BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 537021.9.peg.410_1
         (952 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|325291476|ref|YP_004277340.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
 gi|325059329|gb|ADY63020.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
          Length = 1185

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/963 (37%), Positives = 542/963 (56%), Gaps = 27/963 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+    +   E+ E      WPLP      ++ Y++L+ E G   ++  A  L++A +  
Sbjct: 237  LRQAMQIDAGETEETAAAAFWPLPGLSGLSLDTYLTLADEVGGSRVIDVAYALREAKRQT 296

Query: 61   CIEERFSLLSSFFLTQKFTPQKNII--TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                R   + +  LT K   + +     + + K +PDL + L  ++D  +  R+R+   +
Sbjct: 297  DSVRRMEFIEAALLTAKGEKKSDAYVINKGMQKSAPDLVDALTLARDHVVACRNRYRLVR 356

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M ++T  +L LA+ L   +E+ KK+   LDFEDLI    +LL +    AW+ YK+DQ I+
Sbjct: 357  MLEATKCALVLAERLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGID 416

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS +QW +I+SL  DFF G++     RTLFAVGDEKQSIYSF GA P+R  
Sbjct: 417  HILVDEAQDTSPVQWSIIQSLAADFFSGESARMGRRTLFAVGDEKQSIYSFQGARPERFS 476

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            +E+   ++R  +  Q F  I LPLSFRST D+L  VD+VFS P+NA GLS D+   + HR
Sbjct: 477  QERDETKRRVDSVEQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNE-PVEHR 535

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            S+R G  GTV++W+ V      +    +E WT+ FD+L + + A+I+ARRIA  I+ MIG
Sbjct: 536  SNRAGHPGTVEVWDMVAP----ETAEDEEDWTAPFDALRESAPATIVARRIAARIAGMIG 591

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
              TI   G +R I+  DILVLVRKR     +  LTR LK    I V G DR  LTDH+A+
Sbjct: 592  NQTIIEKGVERAIEPGDILVLVRKRH--AFVNALTRELKRRKNIPVAGADRLRLTDHIAV 649

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF++  EDDLS   +LKSPLFN SEDD+F +   R +TE+V++ +Q  +    
Sbjct: 650  QDLLALGRFVVLPEDDLSLAALLKSPLFNLSEDDVFDVAATRSDTESVWQRLQTLSQDEN 709

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            S+F  V   +   I +++  + HDFF  +L    GR++F+ R GNE  DVLDEFL+F L 
Sbjct: 710  SRFSVVANKLKNFIALSKTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLDEFLSFALD 769

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E+     LQ  +S LE   P +KR    +  EVRIMTVH +KGLE+PVVF+VD GS+ F
Sbjct: 770  HERTGLPGLQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVFVVDGGSKAF 829

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +H H+ K+  + +  D    P+W+P S   N+++    + LK + ++EY RLLYV MTRA
Sbjct: 830  NHSHVPKLRFVEA--DGDAFPVWLPGSGFSNHLIRADEERLKTAAEDEYRRLLYVAMTRA 887

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +D L++C +       K N   W+ +V  +  ++E           + +EW    W    
Sbjct: 888  ADHLVVCGYRGQ----KENPECWHAIVKTALADNE-KHCQPQQFMADGEEWQGLVWRKSD 942

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----DTKGKTNLESL 773
              +TP  +     Q  +E  +P  L +P+    + P  L+PS       D      + S 
Sbjct: 943  ARSTPAPQRLPEPQTQEEYALPAGLLTPLPALPSLPRPLSPSGAGTIIDDGADDLAVRSP 1002

Query: 774  LSDNQ------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            L   +         RG ++H++LQ +    E +R+     Y  + A+ WP+ E ++L+ +
Sbjct: 1003 LFGEKADVSSLALQRGRLVHRMLQALPDFAESEREEAARRYAERAARFWPSAEREHLIRA 1062

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
            + R++  P +  A S +S +EVS+ G +   ++   +SGRID++++    + + +YKT+ 
Sbjct: 1063 VLRVMSEPAVQPAFSPNSRAEVSIMGTMTIGRQHYAVSGRIDRLAVDGDRVILVDYKTNR 1122

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
              P++   IP++H AQL+IY +IL   YP K  VC LIY        +  + + +A A I
Sbjct: 1123 VPPRDAHEIPFSHTAQLAIYREILSPLYPGKEFVCALIYTENAAFMTVGDDAMMQALAAI 1182

Query: 948  STK 950
             TK
Sbjct: 1183 KTK 1185


>gi|241206969|ref|YP_002978065.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240860859|gb|ACS58526.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1183

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/962 (38%), Positives = 552/962 (57%), Gaps = 25/962 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+ R GL+  ++ + I    WPLP      +  Y+SL+ + G     + A  L+   + +
Sbjct: 235  LRKRLGLAAGDTEDRIAAQYWPLPALSGGTLELYLSLADQKGGAKAQEVAYGLRLTGRER 294

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                R  +L   FLT K  P+ +     + +  ++P L E +  ++      RDR    +
Sbjct: 295  DDARRAEILEKIFLTVKGEPKADSQFFVKAMLAEAPQLAEAIAIARAHVAASRDRLKLMR 354

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M+ +T A+L LA  LN  YEE KK+   LDFEDLI  T DLL K  V  WI YK+D+ I+
Sbjct: 355  MYGATHAALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS IQW VI+SL EDFF G++     RTLFAVGDEKQSIYSF GA P+R  
Sbjct: 415  HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFS 474

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             E    ++R +++GQ FS + LPLSFRSTAD+L  VD +F  PENA+GLS      + HR
Sbjct: 475  EESDRTRRRVSDSGQSFSTVRLPLSFRSTADVLEAVDHIFKAPENARGLSALGE-PVVHR 533

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            SSRIG  G V LWE V      +   ++E WT+ FD+ P+ + A+ILARRIA++I +++G
Sbjct: 534  SSRIGHPGAVDLWEMVAP----EAVMKEEDWTAPFDATPESAPAAILARRIAHSIGSLVG 589

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +TI   GK+R I+A DILVLVRKR     +  LTR LK    I V G DR +LT H+A+
Sbjct: 590  RETIVDKGKERPIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLVLTSHIAV 647

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L  EDDLS   +LKSPLF+ SEDDIF +   R + ++V+ +++ FA  G 
Sbjct: 648  QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAVAALRGDNQSVWSHLKSFAADGT 707

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +F+  ++ +   +  ++  S HDF+  +LG+  GR+QF++R G EV D+LDEFL FTL 
Sbjct: 708  ERFRAAVERLELFLRQSRSLSVHDFYARVLGSYGGRRQFLARLGTEVSDILDEFLTFTLD 767

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E +    LQ  IS LE   P +KR      NEVRIMTVH +KGLE+P+VFLVD GS+ F
Sbjct: 768  HETSGLPGLQSFISTLELEAPVMKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAF 827

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +H H+ K+ ++ +  D+P +P+W+P S   N++  D    ++   +EEY RLLYV MTRA
Sbjct: 828  THTHLPKLRLIETGPDEPPMPVWVPVSDLANSLTQDDAARIQMLAEEEYRRLLYVAMTRA 887

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +D+L++C +       + N  TW+ M+  +   D+       T S    EW   +W    
Sbjct: 888  ADRLVVCGYRGV----RVNNDTWHMMISTA-LRDDHPHVEATTFSGPDGEWPGIKWRVPR 942

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------- 769
             E +  ER    ++   E+ +P  L  P+      P  L+PS   T    +         
Sbjct: 943  VERS-FERIGRSEERGSEETLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDAGGLLVVSP 1001

Query: 770  -LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                    +++  +G +IH++LQ +  +P  +R +  + Y  + A+ WP  E + L+ S+
Sbjct: 1002 LFGETERSDRSLEKGRLIHRMLQALPEIPLAERPDAASRYAERAARFWPEAERRKLVDSV 1061

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +LL+   +   +   +  EVS+ G +    +   +SGRID++++    + I +YKT+  
Sbjct: 1062 LKLLDEEGLQAVLGAQAQPEVSIMGTLTLEDRRYAVSGRIDRLAVLADRVVILDYKTNRV 1121

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
             P   E IP+ H AQL+IY +IL   Y ++ + C+L+Y     +F + +  L  A A + 
Sbjct: 1122 PPATEEAIPFAHRAQLAIYREILTPLYADRRIDCMLVYTENASLFTLSEKALGLALAAVK 1181

Query: 949  TK 950
            TK
Sbjct: 1182 TK 1183


>gi|86355694|ref|YP_467586.1| nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42]
 gi|45505284|gb|AAS67014.1| AddA [Rhizobium etli]
 gi|86279796|gb|ABC88859.1| probable nuclease/helicase protein, ATP dependent [Rhizobium etli CFN
            42]
          Length = 1183

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/962 (38%), Positives = 548/962 (56%), Gaps = 25/962 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L++R GL+  ++   I    WPLP      +  Y+SL+ + G     + A  L+ A + +
Sbjct: 235  LRDRLGLAAGDTESRIAAQYWPLPELSGRILELYLSLADQKGGAKAQEVAYGLRLAGRER 294

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
              + R  +L   FLT K  P+ +   + + +  ++P L   +  ++      RDR    +
Sbjct: 295  DDDRRAEMLEKIFLTAKGEPKSDSQFLVKAMLAEAPQLTSAIAVARAHVAASRDRLKMMR 354

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            MF +T A+L LA  LN  YEE KK+   LDFEDLI  T DLL K  V  WI YK+D+ I+
Sbjct: 355  MFGATQAALVLAGRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS IQW VI+SL EDFF G++     RTLFAVGDEKQSIYSF GA P+R  
Sbjct: 415  HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPGVRTLFAVGDEKQSIYSFQGARPERFS 474

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             E    ++R +++G  FS + LPLSFRSTAD+L  VD++F   +NA+GLS      + HR
Sbjct: 475  EESDRTRRRVSDSGLSFSSVRLPLSFRSTADVLEAVDEIFRTSDNARGLSAVGE-PVVHR 533

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            SSRIG  G V LWE V      +   ++E WT+ FD+ P+ + A+ILARRIA++I  ++G
Sbjct: 534  SSRIGHPGAVDLWEVVAP----EAVVKEEDWTAPFDATPESAPAAILARRIAHSIGTLVG 589

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +TI   GK+R+I+A DILVLVRKR     +  LTR LK    I V G DR  LT H+A+
Sbjct: 590  RETIVDKGKERLIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLTLTSHIAV 647

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L  EDDLS   +LKSPLF+ SEDDIF I   R + E+V+ ++++FA  G 
Sbjct: 648  QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAIAGLRDDNESVWSHLKRFAADGT 707

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +F+  ++ +   +  ++  S HDF+  +LG+  GR+QF++R G EV D+LDEFL FTL 
Sbjct: 708  ERFRAAVERLELFLRQSRHLSVHDFYARVLGSHGGRRQFLARLGTEVSDILDEFLTFTLD 767

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E +    LQ  IS LE   P +KR      NEVRIMTVH +KGLE+P+VFLVD GS+ F
Sbjct: 768  HESSGLPGLQSFISTLELEAPEVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKPF 827

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +H H+ K+ ++ +  D+P +P W+P S   N++  +    ++   +EEY RLLYV MTRA
Sbjct: 828  THTHLPKLRLIETDADEPPLPAWVPVSDLANSLTQNDAARIQMLAEEEYRRLLYVAMTRA 887

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +D+L++C +        +        + +   + E       T S    EW    W    
Sbjct: 888  ADRLVVCGYRGVRVNNDTWHMMISTALSEGHPHVEAA-----TFSGPDGEWPGIRWRVPR 942

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------KGKTN 769
             E    ER +  +    ++ +P+ L  P+      P  L+PS   T            + 
Sbjct: 943  VERR-FERIDRSEAHDSQEALPEGLSRPLPPQAELPRPLSPSGAGTIVDEDEGSLFVASP 1001

Query: 770  LESLLSDNQ-TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
            L      +  +  +G +IH++LQ +  +P  +R +  + Y  + A+LWP  E + L+ S+
Sbjct: 1002 LFGEKERSDHSLEKGRLIHRMLQALPDIPPVERPDAASRYAERAARLWPEAERRRLVDSV 1061

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +L++   +   +  ++  EVS+ G +    +   +SGRID++++    I I +YKT+  
Sbjct: 1062 VKLMDEEGLQPVLGAEARPEVSIMGTLTLEDRRYAVSGRIDRLAVLADRIVILDYKTNRV 1121

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
             P   E IP+ H AQL+IY +IL   YP K + C+L+Y     ++ + +  L  A A + 
Sbjct: 1122 PPSTEEAIPFAHKAQLAIYREILAPLYPGKRIDCMLVYTENASLYTLSEKALGLALAGLK 1181

Query: 949  TK 950
            TK
Sbjct: 1182 TK 1183


>gi|116249792|ref|YP_765630.1| ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv.
            viciae 3841]
 gi|115254440|emb|CAK05514.1| putative ATP-dependent UvrD family DNA helicase [Rhizobium
            leguminosarum bv. viciae 3841]
          Length = 1183

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/962 (38%), Positives = 556/962 (57%), Gaps = 25/962 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+ R GL++ ++ + I    WPLP    S +  Y+SL+ + G     + A  L+ A + +
Sbjct: 235  LRKRLGLAVGDTEDRIEAQYWPLPELSGSVLELYLSLADQKGGAKAQEVAYGLRLAGRER 294

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                R   L   FLT K  P+ +     + +  ++P L E +  ++      RDR    +
Sbjct: 295  DDARRAQFLEKIFLTVKGEPKADSQFFVKAMLAEAPQLAEAIAIARAHVAASRDRLKLMR 354

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M+ +T A+L LA  LN  YEE KK+   LDFEDLI  T DLL K  V  WI YK+D+ I+
Sbjct: 355  MYGATHAALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS IQW VI+SL EDFF G++     RTLFAVGDEKQSIYSF GA P+R  
Sbjct: 415  HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFS 474

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             E    ++R +++GQ FS + LPLSFRSTAD+L  VD +F  PENA+GLS      + HR
Sbjct: 475  EESDRTRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDHIFKTPENARGLSALGE-PVVHR 533

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            SSRIG  G V LWE +      +   ++E WT+ FD+ P+ + A+ILARRIA++I  ++G
Sbjct: 534  SSRIGHPGAVDLWEMIAP----EAVVKEEDWTAPFDATPESAPAAILARRIAHSIGTLVG 589

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +TI   GK+R+I+A DILVLVRKR     +  LTR LK    I V G DR +LT H+A+
Sbjct: 590  RETIVDKGKERLIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLVLTSHIAV 647

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L  EDDLS   +LKSPLF+ SEDDIF I   R + E+ + +++ FA  G 
Sbjct: 648  QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAIAALRGDNESFWSHLRSFAADGT 707

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
              F+  ++ +   +  ++  S HDF+  +LG+  GR+QF++R G EV D+LDEFL FTL 
Sbjct: 708  ELFRAAVERLELFLRQSRSLSVHDFYARVLGSYGGRRQFLARLGTEVSDILDEFLTFTLD 767

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E +    LQ  IS LE   P +KR      NEVRIMTVH +KGLE+P+VFLVD GS+ F
Sbjct: 768  HESSGLPGLQSFISTLELEAPVMKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAF 827

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +H H+ K+ ++ +  D+P +P+W+P S   N++  D    ++   +EEY RLLYV MTRA
Sbjct: 828  THTHLPKLRLIETRPDEPPMPVWVPVSDLANSLTQDDAARIQMLAEEEYRRLLYVAMTRA 887

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +D+L++C +       + N  TW+ M+  +  +D+       T S +  EW   +W    
Sbjct: 888  ADRLVVCGYRGV----RVNNDTWHMMISTA-LHDDHPHVEATTFSGSDGEWPGIKWRVPR 942

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------- 769
             E +  ER +  ++   E+ +P  L  P+      P  L+PS   T    +         
Sbjct: 943  VERS-FERIDRSQERGSEETLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLLVVSP 1001

Query: 770  -LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                    +++  +G +IH++LQ +  +P  +R +  + Y  + A+ WP  E + L+ S+
Sbjct: 1002 LFGEKEHSDRSLEKGRLIHRMLQALPEIPLAERPDAASRYAERAARFWPEVERRKLVDSV 1061

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +LL+   +   +   +  EVS+ G +    +   +SGRID++++    + I +YKT+  
Sbjct: 1062 LKLLDEEGLQAVLGAQAQPEVSIMGTLTLEDRRYAVSGRIDRLAVLADRVVILDYKTNRV 1121

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
             P   E IP+ H AQL+IY +IL   YP+K + C+L+Y     ++ + +  L  A A + 
Sbjct: 1122 PPATEEAIPFAHRAQLAIYREILTPLYPDKLIDCMLVYTENASLYTLSEKALGLALAAVK 1181

Query: 949  TK 950
            TK
Sbjct: 1182 TK 1183


>gi|190889666|ref|YP_001976208.1| probable ATP-dependent exonuclease V protein, nuclease and helicase
            domains [Rhizobium etli CIAT 652]
 gi|190694945|gb|ACE89030.1| probable ATP-dependent exonuclease V protein, nuclease and helicase
            domains [Rhizobium etli CIAT 652]
          Length = 1183

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/962 (37%), Positives = 544/962 (56%), Gaps = 25/962 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+ R GL+ +++   I  + WPLP      +  Y+S++ + G     + A  L+ A + +
Sbjct: 235  LRKRLGLATDDTERGIAGEYWPLPELSGGTLELYLSMADQKGGAKAQEVAYGLRLAGRER 294

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                R ++L   FLT K  P+ +   + + +  ++P L E +  ++      RDR    +
Sbjct: 295  DGARRAAMLEKIFLTAKGEPKTDSQFLVKAMLAEAPQLTEAIAAARAHVAASRDRLKLMR 354

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M  +T A+L LA  LN  YEE KK+   LDFEDLI  T DLL K  V  WI YK+D+ I+
Sbjct: 355  MHGATQAALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS IQW VI+SL EDFF G++     RTLFAVGDEKQSIYSF GA P+R  
Sbjct: 415  HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFS 474

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             E    ++R +++GQ FS + LPLSFRSTAD+L  VD++F   +NA+GLS      + HR
Sbjct: 475  EESDRTRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDEIFRTADNARGLSAVGE-PVVHR 533

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            SSRIG  G V LW+ V      +   ++E WT+ FD+ P+ + A+ILARRIA++I  ++G
Sbjct: 534  SSRIGHPGAVDLWDMVAP----EAAVKEEDWTAPFDATPESAPAAILARRIAHSIGALVG 589

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +TI   GK+R+I+A DILVLVRKR     +  LTR LK    I V G DR +LT H+A+
Sbjct: 590  RETIVDKGKERLIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLVLTSHIAV 647

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L  EDDLS   +LKSPLF+ SE+DIF I   R + E+ + +++KFA  G 
Sbjct: 648  QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEEDIFAIAALRGDNESAWSHLRKFAADGN 707

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +F+  ++ +   +  ++  S HDF+  +LG+  GR+QF++R G EV D+LDEFL FTL 
Sbjct: 708  ERFRAAVEKLELFLRQSKNLSVHDFYARLLGSHGGRRQFLARLGTEVSDILDEFLTFTLD 767

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E +    LQ  IS LE   P +KR      NEVRIMTVH +KGLE+P+VFLVD GS+ F
Sbjct: 768  HESSGLPGLQSFISTLELEAPEVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAF 827

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +H H+ K+ ++ +  D+P +P W+P +   N++  +    ++   +EEY RLLYV MTRA
Sbjct: 828  THTHLPKLRLIETEPDEPPMPAWVPVADLANSLTQNDAARIQILAEEEYRRLLYVAMTRA 887

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +D+L++C +        +        + +   + E              EW   +W    
Sbjct: 888  ADRLVVCGYRGVRVNNDTWHMMISTALSEGHPHVEAASFSD-----PDGEWPGIKWRVPR 942

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------- 769
             E +  ER    +   +E  +P+ L  P+      P  L+PS   T    +         
Sbjct: 943  VERS-FERINRSEARDNEISLPEGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLVVVSP 1001

Query: 770  -LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                    +++  +G ++H++LQ +  +P  +R      Y  + A+ W   E + L+ S+
Sbjct: 1002 LFSEKQGSDRSLEKGRLLHRMLQALPDIPPEERPGAAQRYAERAARFWSEAERRKLVDSV 1061

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +LL+   +   +   +  EVS+ G +    +   +SGRID++++    + I +YKT+  
Sbjct: 1062 LKLLDEKDLQPVLGEQARPEVSIMGTLTLDGRRYAVSGRIDRLAVLADRVVILDYKTNRV 1121

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
             P   E IP+ H AQL+IY +IL   YP K + C+L+Y     ++ + +  L  A A + 
Sbjct: 1122 PPATEEAIPFAHRAQLAIYREILAPLYPGKRIDCMLVYTENASLYTLSEKALGLALAGLK 1181

Query: 949  TK 950
            TK
Sbjct: 1182 TK 1183


>gi|327192794|gb|EGE59722.1| putative ATP-dependent exonuclease V protein [Rhizobium etli
            CNPAF512]
          Length = 1183

 Score =  640 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/962 (37%), Positives = 543/962 (56%), Gaps = 25/962 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+ R GL+ +++ + I    WPLP      +  Y+SL+   G     + A  L+ A + +
Sbjct: 235  LRKRLGLAADDTEKGIAAQYWPLPELSGGTLELYLSLADHKGGAKAQEVAYGLRLAGRER 294

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               +R ++L   FLT K   + +   + + +  ++P L E +  ++      RDR    +
Sbjct: 295  DDAKRAAMLEKIFLTAKGEQKTDSQFLVKAMLAEAPQLTEAIAAARAHVAASRDRLKLMR 354

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M  +TLA+L LA  LN  YEE KK+   LDFEDLI  T DLL K  V  WI YK+D+ I+
Sbjct: 355  MHGATLAALVLADRLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS IQW VI+SL EDFF G++     RTLFAVGDEKQSIYSF GA P+R  
Sbjct: 415  HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPIVRTLFAVGDEKQSIYSFQGARPERFS 474

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             E    ++R +++GQ FS + LPLSFRSTAD+L  VD++F   +NA+GLS      + HR
Sbjct: 475  EESDRTRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDEIFRTSDNARGLSAVGE-PVVHR 533

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            SSRIG  G V LW+ V      +   ++E WT+ FD+ P+ + A+ILARRIA++I  ++G
Sbjct: 534  SSRIGHPGAVDLWDMVAP----EAVVKEEDWTAPFDATPESAPAAILARRIAHSIGALVG 589

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +TI   GK+R+I+A DILVLVRKR     +  LTR LK    I V G DR +LT H+A+
Sbjct: 590  RETIVDKGKERLIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLVLTSHIAV 647

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L  EDDLS   +LKSPLF+ SE+DIF I   R + E+V+ +++KFA  G 
Sbjct: 648  QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEEDIFAIAALRGDNESVWSHLRKFAADGN 707

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +F+  ++ +   +  ++  S HDF+  +LG+  GR+QF++R G EV D+LDEFL FTL 
Sbjct: 708  ERFRAAVEKLELFLRQSKNLSVHDFYARLLGSHGGRRQFLARLGTEVSDILDEFLTFTLD 767

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E +    LQ  IS LE   P +KR      NEVRIMTVH +KGLE+P+VFLVD GS+ F
Sbjct: 768  HESSGLPGLQFFISTLELEAPEVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAF 827

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +H H+ K+ ++ +  D+P +P W+P +   N++       ++   +EEY RLLYV MTRA
Sbjct: 828  THTHLPKLRLIETDPDEPPMPAWVPVADLGNSLTQKDAARIQILAEEEYRRLLYVAMTRA 887

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +D+L++C +        +        + +   + E              EW    W    
Sbjct: 888  ADRLVVCGYRGVRANNDTWHMMISTALSEGHPHVEAASFSD-----PDGEWPGIRWRVPR 942

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------- 769
             E +  E     +   DE  +P+ L  P+      P  L+PS   T    +         
Sbjct: 943  VERS-FEGINRSEARDDEISLPEGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLVVASP 1001

Query: 770  -LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                    +++  +G ++H++LQ +  +P  +R      Y  + A+ WP  E + L+ S+
Sbjct: 1002 LFSEKQRSDRSLEKGRLLHRMLQALPDIPPDERPGAAQRYGERAARFWPEAERRKLVDSV 1061

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +LL+   +   +   +  EVS+ G +    +   +SGRID++++    + I +YKT+  
Sbjct: 1062 LKLLDEKDLQPVLGEQARPEVSIMGTLMLDGRRYAVSGRIDRLAVLDDRVVILDYKTNRV 1121

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
             P   E IP+ H AQL+IY +IL   YP K + C+L+Y     ++ + +  L  A A + 
Sbjct: 1122 PPATEEAIPFAHRAQLAIYREILAPLYPGKRIDCMLVYTENATLYTLSEKALGLALAGLK 1181

Query: 949  TK 950
            TK
Sbjct: 1182 TK 1183


>gi|209551530|ref|YP_002283447.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209537286|gb|ACI57221.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1183

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 372/962 (38%), Positives = 556/962 (57%), Gaps = 25/962 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+ R GL+ +++   I    WPLP      +  Y+SL+ + G     + A  L+ A + +
Sbjct: 235  LRERLGLAPDDTESRIAAQYWPLPELSGGMLELYLSLADQKGGAKAQEVAYGLRLAGRER 294

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               +R   L   FLT K  P+ +     + +   +P L   +  ++      RDR    +
Sbjct: 295  DDAKRAEFLEKIFLTVKGEPKADSQFTVKAMLADAPQLAGAIAAARAHVAASRDRLKLMR 354

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M+ +T A+L LA+ LN  YEE KK+   LDFEDLI  T DLL K  V  WI YK+D+ I+
Sbjct: 355  MYGATYAALVLAERLNHDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWIHYKLDRGID 414

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS IQW VI+SL EDFF G++     RTLFAVGDEKQSIYSF GA P+R  
Sbjct: 415  HILVDEAQDTSPIQWSVIQSLAEDFFSGESARPVVRTLFAVGDEKQSIYSFQGARPERFS 474

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             E    ++R +++GQ FS + LPLSFRSTAD+L  VD +F  P+N++GLS      + HR
Sbjct: 475  EESDRTRRRVSDSGQSFSSVRLPLSFRSTADVLEAVDHIFREPDNSRGLSALGE-PVVHR 533

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            SSRIG  G V LWE V      +   ++E WT+ FD+ P+ + A+ILARRIA++I  ++G
Sbjct: 534  SSRIGHPGAVDLWEMVAP----EAVVKEEDWTAPFDATPESAPAAILARRIAHSIGALVG 589

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +TI   GK+R+I+A DILVLVRKR     +  LTR LK    I V G DR +LT H+A+
Sbjct: 590  RETIVDKGKERLIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLVLTSHIAV 647

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L  EDDLS   +LKSPLF+ SEDDIF I   R + E+V+ ++++FA  G 
Sbjct: 648  QDLLALGRFLLLPEDDLSLAAVLKSPLFDLSEDDIFAIAALRGDNESVWNHLRRFAADGT 707

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +F+  ++ +   +  ++  S HDF+  +LG+  GR+QF++R G EV D+LDEFL FTL 
Sbjct: 708  ERFRAAVERLELFLRQSRSLSVHDFYARVLGSHGGRRQFLARLGTEVSDILDEFLTFTLD 767

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E +    LQ  IS LE   P +KR      NEVRIMTVH +KGLE+P+VFLVD GS+ F
Sbjct: 768  HESSGLPGLQSFISTLELEAPVVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAF 827

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +H H+ K+ ++ +  D+P +P+W+P S   N++  +    ++   +EEY RLLYV MTRA
Sbjct: 828  THTHLPKLRLIETDADEPPMPVWVPVSDLANSLTQNDAVRIQMLAEEEYRRLLYVAMTRA 887

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +D+L++C +       + N  TW+ M+  +   D+       T S    EW   +W    
Sbjct: 888  ADRLVVCGYRGV----RLNNDTWHMMISTA-LRDDHPHVEATTFSSPDGEWPGIKWRVPR 942

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK---------TN 769
             E +  ER +  ++    +++P  L  P+      P  L+PS   T            + 
Sbjct: 943  VERS-FERIDRSQERDSVERLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDEGGLLVVSP 1001

Query: 770  LESLLSD-NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
            L +     +++  +G +IH++LQ +  +P  +R +    Y  + A+ WP  E + L+ S+
Sbjct: 1002 LFAEKERSDRSLEKGRLIHRMLQALPEIPPAERADAAGRYAERAARFWPETERRKLVDSV 1061

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +LL+   +   +S ++  EVS+ G +    +   +SGRID++++    + I +YKT+  
Sbjct: 1062 LKLLDEEGLQAVLSNEAQPEVSIMGTLTLEDRCYAVSGRIDRLAVLADRVVILDYKTNRV 1121

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
             P     IP+ H AQL+IY +IL   YP K + C+L+Y     ++ + +  L  A A + 
Sbjct: 1122 PPATEAAIPFAHRAQLAIYREILAPLYPGKPIECMLVYTENASLYTLSEKALGLALAAVK 1181

Query: 949  TK 950
            TK
Sbjct: 1182 TK 1183


>gi|307322014|ref|ZP_07601393.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
            AK83]
 gi|306892352|gb|EFN23159.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
            AK83]
          Length = 1189

 Score =  632 bits (1629), Expect = e-178,   Method: Composition-based stats.
 Identities = 340/966 (35%), Positives = 524/966 (54%), Gaps = 27/966 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+   GL   E+   +   +WPL       ++ Y+ L +  G       A  L+      
Sbjct: 235  LRAALGLEPGETAGTVMAAVWPLAGLNGPALDDYIDLGLRLGGAKPSAIADGLRAVRAID 294

Query: 61   CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                R+S L   F      P+     +   + + +P L+ ++++++   +   DR +  +
Sbjct: 295  DAATRYSKLVELFFNGGGKPKAESAFLNAAMRRAAPQLELRVEEARSHMLACVDRLSIVQ 354

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M+ +T A+L LA+ LN  YE  KK    LDFEDLI  T  LL + DV AW+ YK+DQ I+
Sbjct: 355  MYGATRAALVLAERLNRDYEALKKARSQLDFEDLIHRTAALLARSDVGAWVHYKLDQGID 414

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW +I+SL  DFF G+   +  RT+FAVGDEKQSIYSF GA P+R  
Sbjct: 415  HILVDEAQDTSPAQWTIIQSLAADFFAGETARADDRTIFAVGDEKQSIYSFQGARPERFS 474

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            RE  + ++R     + FS I L LSFRST D+L+ VD VF+ P NA+GLS  S   + H 
Sbjct: 475  RESTLTERRVRAGNKHFSPIRLQLSFRSTVDVLSAVDTVFANPGNARGLSARSEAIV-HA 533

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            S+RIGQ G V LW+ +      +    +E WT+ FD+ P+ +  +ILARRIA  + + IG
Sbjct: 534  SNRIGQPGAVDLWDVIAP----EPAASEEDWTAPFDATPERAPVNILARRIAAVLEDWIG 589

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +T+   G +R ++  D++VLVRKR     +  LTR LK    I V G DR +LT H+A+
Sbjct: 590  RETVIEKGVRRAMRPGDVIVLVRKRD--AFVNALTRALKRRGNIPVAGADRLVLTSHIAV 647

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L  EDDLS   +LKSPL +  E+D+F++  +R E E+++  +++      
Sbjct: 648  QDLIALGRFVLLPEDDLSLAALLKSPLLDLGEEDVFELAARRTEGESLWRRLRQAGAEET 707

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            S++   ++ +     +A+   PHDF+  +LGA  GR+ F++R G+EV D+LDEFL F L 
Sbjct: 708  SRYHEAVRTLSRYSGLARELLPHDFYARVLGADGGRRAFLARLGSEVSDILDEFLTFALD 767

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E+N    LQ  IS LE   PT+KR      +EVR+MTVH AKGLE+PVVFLVD G + F
Sbjct: 768  HERNGLPGLQAFISTLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAF 827

Query: 599  SHKHIKKMHIMPSLNDDPG---IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              + +  +  +     D     +P+W     + N++++   + LKK  +EEY RLLYVGM
Sbjct: 828  VRQQVSDLRFLEKAQVDHSTLTVPVWRAPGSAPNSLIAADNERLKKLAEEEYRRLLYVGM 887

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA+D+LI+C +       + N  TW+ MV  +   D + +          +EW    W 
Sbjct: 888  TRAADRLIVCGYRGQ----RQNTDTWHSMVQGTLAQDLKGRGTPRLFRAGSEEWQGIAWR 943

Query: 716  THH-PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN----- 769
              H P + P     + +       +P  LF+P       P  L PS              
Sbjct: 944  EAHVPRDLPTSEGRSEESQRPTAGLPTALFTPPAAPRRLPRPLAPSGTTIAIDDPDAEVI 1003

Query: 770  -----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                      +   +  RG I+H+LLQV+ ++   +R      Y  ++   WP  E + L
Sbjct: 1004 VGSALFAGKSAPKFSMLRGAILHRLLQVLPSVDGPERLAAAERYLARSVPRWPEAERRAL 1063

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              ++  +L++  +       S +EVSV G +    ++  +SGRID+++++   + I +YK
Sbjct: 1064 AGTVMDVLDHADLQPLFGEHSRAEVSVMGTLKLGVREFAVSGRIDRLAVTGDMVTIADYK 1123

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+  +P+  E I   +  QL+IY ++LK  YP K   C+LI+   P + ++P+  L+++ 
Sbjct: 1124 TNREIPETPEEIAPVYRNQLAIYRELLKPLYPGKRFRCVLIFTEGPAIRVLPEPMLDRSL 1183

Query: 945  AEISTK 950
             E++TK
Sbjct: 1184 EELATK 1189


>gi|15963787|ref|NP_384140.1| putative ATP-dependent nuclease/helicase protein [Sinorhizobium
            meliloti 1021]
 gi|307310975|ref|ZP_07590620.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
            BL225C]
 gi|15072962|emb|CAC41421.1| ATP-dependent nuclease / helicase [Sinorhizobium meliloti 1021]
 gi|306899655|gb|EFN30282.1| double-strand break repair helicase AddA [Sinorhizobium meliloti
            BL225C]
          Length = 1189

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 340/966 (35%), Positives = 524/966 (54%), Gaps = 27/966 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+   GL   E+   +   +WPL       ++ Y+ L +  G       A  L+      
Sbjct: 235  LRAALGLEPGETAGTVMAAVWPLAGLNGPALDDYIDLGLRLGGAKPSAIADGLRAVRAID 294

Query: 61   CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                R+S L   F      P+     +   + + +P L+ ++++++   +   DR +  +
Sbjct: 295  DAATRYSKLVELFFNGGGKPKAESAFLNAAMRRAAPQLELRVEEARSHMLACVDRLSIVQ 354

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M+ +T A+L LA+ LN  YE  KK    LDFEDLI  T  LL + DV AW+ YK+DQ I+
Sbjct: 355  MYGATRAALVLAERLNRDYEALKKARSQLDFEDLIHRTAALLARSDVGAWVHYKLDQGID 414

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW +I+SL  DFF G+   +  RT+FAVGDEKQSIYSF GA P+R  
Sbjct: 415  HILVDEAQDTSPAQWTIIQSLAADFFAGETARADDRTIFAVGDEKQSIYSFQGARPERFS 474

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            RE  + ++R     + FS I L LSFRST D+L+ VD VF+ P NA+GLS  S   + H 
Sbjct: 475  RESTLTERRVRAGNKHFSPIRLQLSFRSTVDVLSAVDTVFANPGNARGLSARSEAIV-HA 533

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            S+RIGQ G V LW+ +      +    +E WT+ FD+ P+ +  +ILARRIA  + + IG
Sbjct: 534  SNRIGQPGAVDLWDVIAP----EPAASEEDWTAPFDATPERAPVNILARRIAAVLEDWIG 589

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +T+   G +R ++  D++VLVRKR     +  LTR LK    I V G DR +LT H+A+
Sbjct: 590  RETVIEKGVRRAMRPGDVIVLVRKRD--AFVNALTRALKRRGNIPVAGADRLVLTSHIAV 647

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L  EDDLS   +LKSPL +  E+D+F++  +R E E+++  +++      
Sbjct: 648  QDLIALGRFVLLPEDDLSLAALLKSPLLDLGEEDVFELAARRTEGESLWRRLRQAGAEET 707

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            S++   ++ +     +A+   PHDF+  +LGA  GR+ F++R G+EV D+LDEFL F L 
Sbjct: 708  SRYHEAVRTLSRYSGLARELLPHDFYARVLGADGGRRAFLARLGSEVSDILDEFLTFALD 767

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E+N    LQ  IS LE   PT+KR      +EVR+MTVH AKGLE+PVVFLVD G + F
Sbjct: 768  HERNGLPGLQAFISTLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAF 827

Query: 599  SHKHIKKMHIMPSLNDDPG---IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              + +  +  +     D     +P+W     + N++++   + LKK  +EEY RLLYVGM
Sbjct: 828  VRQQVSDLRFLEKAQVDHSTLTVPVWRAPGSAPNSLIAADNERLKKLAEEEYRRLLYVGM 887

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA+D+LI+C +       + N  TW+ MV  +   D + +          +EW    W 
Sbjct: 888  TRAADRLIVCGYRGQ----RQNTDTWHSMVQGTLAQDLKGRGTPRLFRAGSEEWQGIAWR 943

Query: 716  THH-PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL- 773
              H P + P     + +       +P  LF+P       P  L PS              
Sbjct: 944  EAHVPRDLPTSEGRSEESQRPTAGLPTALFTPPAAPRRLPRPLAPSGTTIAIDDPDAEAI 1003

Query: 774  ---------LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                      +   +  RG I+H+LLQV+ ++   +R      Y  ++   WP  E + L
Sbjct: 1004 VGSALFAGKSAPKFSMLRGAILHRLLQVLPSVDGPERLAAAERYLARSVPRWPEAERRAL 1063

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              ++  +L++  +       S +EVSV G +    ++  +SGRID+++++   + I +YK
Sbjct: 1064 AGTVMDVLDHADLQPLFGEHSRAEVSVMGTLKLGVREFAVSGRIDRLAVTGDMVTIADYK 1123

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+  +P+  E I   +  QL+IY ++LK  YP K   C+LI+   P + ++P+  L+++ 
Sbjct: 1124 TNREIPETPEEIAPVYRNQLAIYRELLKPLYPGKRFRCVLIFTEGPAIRVLPEPMLDRSL 1183

Query: 945  AEISTK 950
             E++TK
Sbjct: 1184 EELATK 1189


>gi|17988306|ref|NP_540940.1| ATP-dependent nuclease subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|17984079|gb|AAL53204.1| ATP-dependent nuclease subunit a [Brucella melitensis bv. 1 str. 16M]
          Length = 1180

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|294851330|ref|ZP_06792003.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026]
 gi|294819919|gb|EFG36918.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026]
          Length = 1180

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 469/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +    W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFFWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRREVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|306842786|ref|ZP_07475427.1| double-strand break repair helicase AddA [Brucella sp. BO2]
 gi|306287059|gb|EFM58567.1| double-strand break repair helicase AddA [Brucella sp. BO2]
          Length = 1180

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 308/966 (31%), Positives = 468/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKVS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + +R ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDRIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TQSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDV 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLEPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLRA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L   YP + +   L++   P +  +P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLTPLYPGRVVEAALLFTEGPFLLPVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|254707379|ref|ZP_05169207.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M163/99/10]
 gi|261314862|ref|ZP_05954059.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M163/99/10]
 gi|261303888|gb|EEY07385.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M163/99/10]
          Length = 1180

 Score =  630 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|306843520|ref|ZP_07476121.1| double-strand break repair helicase AddA [Brucella sp. BO1]
 gi|306276211|gb|EFM57911.1| double-strand break repair helicase AddA [Brucella sp. BO1]
          Length = 1180

 Score =  630 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 468/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDACEDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E      LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AECAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLEPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+    D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGHDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P+ + AQL++Y ++L+  YP + +   L++   P +  +P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPFAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLPVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|62290945|ref|YP_222738.1| UvrD/Rep family helicase [Brucella abortus bv. 1 str. 9-941]
 gi|82700856|ref|YP_415430.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308]
 gi|189025157|ref|YP_001935925.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237816450|ref|ZP_04595443.1| double-strand break repair helicase AddA [Brucella abortus str. 2308
            A]
 gi|254690236|ref|ZP_05153490.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870]
 gi|254731267|ref|ZP_05189845.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
 gi|256258489|ref|ZP_05464025.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68]
 gi|260546208|ref|ZP_05821948.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260755777|ref|ZP_05868125.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str.
            870]
 gi|260759000|ref|ZP_05871348.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str.
            292]
 gi|260884801|ref|ZP_05896415.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str.
            C68]
 gi|297247330|ref|ZP_06931048.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str.
            B3196]
 gi|62197077|gb|AAX75377.1| helicase, UvrD/Rep family [Brucella abortus bv. 1 str. 9-941]
 gi|82616957|emb|CAJ12061.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella
            melitensis biovar Abortus 2308]
 gi|189020729|gb|ACD73451.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237788517|gb|EEP62732.1| double-strand break repair helicase AddA [Brucella abortus str. 2308
            A]
 gi|260096315|gb|EEW80191.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260669318|gb|EEX56258.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str.
            292]
 gi|260675885|gb|EEX62706.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str.
            870]
 gi|260874329|gb|EEX81398.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str.
            C68]
 gi|297174499|gb|EFH33846.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str.
            B3196]
          Length = 1180

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 306/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLA--VPAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMT+H AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTMHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|315122046|ref|YP_004062535.1| double-strand break repair helicase AddA [Candidatus Liberibacter
            solanacearum CLso-ZC1]
 gi|313495448|gb|ADR52047.1| double-strand break repair helicase AddA [Candidatus Liberibacter
            solanacearum CLso-ZC1]
          Length = 1179

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 635/953 (66%), Positives = 763/953 (80%), Gaps = 11/953 (1%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            LK+RF L  NESYE IY+D+WPLP+ + SDI +Y+ L+       +LKKA  L++ SQ  
Sbjct: 235  LKDRFDLPPNESYEKIYQDMWPLPHLRESDIKQYIFLAT---TKKMLKKANILKKLSQDH 291

Query: 61   CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             IEER +LL SFFLT++F P     ++T    KK PDLKEK+ KSQ EFI I +R  TYK
Sbjct: 292  SIEERLNLLLSFFLTEEFKPYTHTTMMTASAAKKLPDLKEKIIKSQQEFILIWERLKTYK 351

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +F +TLASLTLAK+LN HY++ KKKN  LDFEDLI+ T DLLKKRD+SAWIRYKIDQEIN
Sbjct: 352  IFSTTLASLTLAKHLNFHYDKLKKKNFFLDFEDLIVYTVDLLKKRDISAWIRYKIDQEIN 411

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HILIDEVQDTSL QWE+IRSLTEDFF+G N +S+PRTLFAVGDEKQSI+SFHGAEPKR  
Sbjct: 412  HILIDEVQDTSLSQWEIIRSLTEDFFIGGNVYSNPRTLFAVGDEKQSIFSFHGAEPKRFF 471

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             EK IN++R  +AGQKFS I+LPLSFRST +IL  VDKVFS  ENAQGL+ED    + HR
Sbjct: 472  HEKTINKERIISAGQKFSTIQLPLSFRSTPEILAAVDKVFSTSENAQGLTEDKQQIL-HR 530

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            S+RIG  G VQLWE+V+S+     NP+QE W S FDS+P+E+SASILARRIAYTIS MI 
Sbjct: 531  SNRIGHAGNVQLWEKVISK----PNPKQEDWISCFDSVPEETSASILARRIAYTISKMIR 586

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +DTI +NGKKR + AKDIL+LVRKRK+ P I FLTRFL ND+KISV  NDRF+LTDHLAI
Sbjct: 587  SDTIINNGKKRPVHAKDILILVRKRKNNPFIAFLTRFLINDHKISVASNDRFVLTDHLAI 646

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            KDLMALG FI+SQEDDLS V +LKSP+FN SE+DIF+ICT+RHETET+Y YIQK AN GI
Sbjct: 647  KDLMALGNFIISQEDDLSLVSLLKSPIFNLSENDIFEICTKRHETETIYAYIQKLANHGI 706

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            SK  H+++Y+ ELI I Q CSP+DFFTLILGAK+GR+QFISRFG EV+DVL+EFLNFTLR
Sbjct: 707  SKCCHIVQYMQELICIYQSCSPYDFFTLILGAKEGRKQFISRFGIEVVDVLNEFLNFTLR 766

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            NEQ + S+LQEL+S+LE YPPT+K+  S N NEVRIMTVH+AKGLESPVVFLVDTGS+VF
Sbjct: 767  NEQKNCSTLQELMSDLEHYPPTLKKE-SVNRNEVRIMTVHSAKGLESPVVFLVDTGSEVF 825

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            S  HIKK+HI PS +D PG PIWIPQ   RN IVSDLI+ LKKS QEE NRLLYVGMTRA
Sbjct: 826  SSNHIKKIHISPSSDDCPGTPIWIPQQFLRNKIVSDLIQDLKKSAQEENNRLLYVGMTRA 885

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            SD+LIIC HSN SNE KSNQRTWY+MVY+SF+ D +VK++KL N  NKDEW+AYEW   +
Sbjct: 886  SDKLIICSHSNASNENKSNQRTWYNMVYESFYEDTQVKEVKLKNPTNKDEWLAYEWCLPN 945

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
             EN  +E E        E+KIP+KLF+PIKN++   Y+LNPS ++ K K   E LL DN 
Sbjct: 946  TENIQVEEEAITAPSNREEKIPEKLFAPIKNEMETSYVLNPSMLNLKDKAIPEKLLPDNT 1005

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               RG IIH+LLQVIFTLPE KR  +I SYC KNA     +E  NLL+SI  LL++P+M+
Sbjct: 1006 CLKRGQIIHQLLQVIFTLPEEKRDPYILSYCKKNANFLSVEEDNNLLISIKALLKDPIMS 1065

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
            TAMS DSY+EVSVSGKI+  KKD++ISGRIDQI+ISQ+N+FIFEYKTH  +P+ IE+IP 
Sbjct: 1066 TAMSSDSYAEVSVSGKIHLSKKDVLISGRIDQIAISQKNVFIFEYKTHPLLPKGIEYIPS 1125

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            +HI QL+IYEK+LK+ YP+KS++CLLIY+S PK+F+IPQ KL+++F EI  KI
Sbjct: 1126 SHITQLAIYEKVLKNLYPDKSIICLLIYISGPKIFMIPQEKLDQSFMEIEDKI 1178


>gi|225853531|ref|YP_002733764.1| double-strand break repair helicase AddA [Brucella melitensis ATCC
            23457]
 gi|254700733|ref|ZP_05162561.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
            513]
 gi|254709079|ref|ZP_05170890.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            B2/94]
 gi|256030604|ref|ZP_05444218.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M292/94/1]
 gi|256045706|ref|ZP_05448584.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
            str. Rev.1]
 gi|256262985|ref|ZP_05465517.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563008|ref|ZP_05833494.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|261316580|ref|ZP_05955777.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            B2/94]
 gi|261751245|ref|ZP_05994954.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
            513]
 gi|265987652|ref|ZP_06100209.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M292/94/1]
 gi|265992127|ref|ZP_06104684.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
            str. Rev.1]
 gi|225641896|gb|ACO01810.1| double-strand break repair helicase AddA [Brucella melitensis ATCC
            23457]
 gi|260153024|gb|EEW88116.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|261295803|gb|EEX99299.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            B2/94]
 gi|261740998|gb|EEY28924.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str.
            513]
 gi|263003193|gb|EEZ15486.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1
            str. Rev.1]
 gi|263092858|gb|EEZ17033.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|264659849|gb|EEZ30110.1| double-strand break repair helicase AddA [Brucella pinnipedialis
            M292/94/1]
 gi|326410100|gb|ADZ67165.1| double-strand break repair helicase AddA [Brucella melitensis M28]
 gi|326539817|gb|ADZ88032.1| double-strand break repair helicase AddA [Brucella melitensis M5-90]
          Length = 1180

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|91974684|ref|YP_567343.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91681140|gb|ABE37442.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
            palustris BisB5]
          Length = 1159

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 262/952 (27%), Positives = 447/952 (46%), Gaps = 24/952 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G++  +  E + +D+   P    +  +   ++  E+G+     +A+ L+ A    
Sbjct: 226  LSATLGVAPQDRCEDVERDILDGPNLPRAQWSTAAAMF-ESGSANDQAQAKRLRAALALS 284

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             + +        F T+   P+K++ T++I   +P   E LK+       + +R     M 
Sbjct: 285  DVAQ-LDKYCEVFFTKDG-PRKSLATKKIADAAPGFVEDLKREGARLEDLLERRRALLMR 342

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + T A L +A  +       K++  +LD++DLI  T  +L     S+W+ +K+D+ ++H+
Sbjct: 343  ERTRALLVIAADVAERIRREKQERGLLDYDDLIDKTLAML-DSGASSWVHFKLDRGVDHV 401

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            LIDE QDTS  QW+++  L  +F  G+       RT+FAVGDEKQSI+SF GA PK    
Sbjct: 402  LIDEAQDTSPKQWDIVAHLIAEFTAGEGARDGVRRTVFAVGDEKQSIFSFQGAVPKEFAE 461

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             + + Q+R   AG  F  +    SFRS A IL  VD VF  P+  + +  D+   + H+S
Sbjct: 462  RRDLLQRRFHGAGLNFEKVSFNYSFRSGATILQSVDHVFRDPDIYRSIHADAAYPL-HQS 520

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                    + LW   +           E W + FD++ + S    LA+++   I+++I  
Sbjct: 521  LADAGPSVIDLWPLELPDDKQN----IEGWRAPFDAVSETSPEVRLAQKVQAEIASLIAG 576

Query: 360  DTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T+  + G +R ++  D+LVLVR+R        + + LK    I V G DR  LT+H+AI
Sbjct: 577  GTMTGSLGDRRRLRFGDVLVLVRRRGSA--FDAVIQALK-RGGIPVAGADRLKLTEHIAI 633

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             DLM L   +L  +DDL+    LKSPLF   +DD+F++  +R    ++   +++ A  G 
Sbjct: 634  IDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFRLAWRRK--GSLRHALREKA-AGD 690

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            +K    ++ +      +Q  +P  F+  +LG   GR + + R G E  D LDEFL   L 
Sbjct: 691  AKLATALQRLDACAERSQTDTPFGFYAWLLGGVGGRARILRRLGPEANDALDEFLELALS 750

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             EQ +  SLQ  ++ L      IKR    + +EVR+MTVH AKGLE+PVVFLVDT S   
Sbjct: 751  YEQKAAPSLQGFMAWLRAADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLVDTTSSPS 810

Query: 599  SHKHIKKMHIMPSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              + +  + +          G  +W  +  +   +V      +   T++EY RLLYV MT
Sbjct: 811  DTQRLNLIRLPGGNAQPGSVGAMVWAGRKSNDPRVVEQARAEMVSETEDEYRRLLYVAMT 870

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA+D+LI+       N  +    +WYD++     N     +    +         Y    
Sbjct: 871  RAADRLIVGG-CMPGNRNEVRALSWYDLISKGLENSGLTMRTAPPDGA----VKRYCRPE 925

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                      +      +       K    ++   N     +P   D +     E+    
Sbjct: 926  DEVTEIAPSEQAPAAPPLVMPDWLHKAAPALRRPDNLLRPSDPDDADHRRIRRGETEAQR 985

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
             +   RG ++H+LLQ +  LP   R N    +  +NA  W  +E   L   +  ++ +  
Sbjct: 986  QRALQRGTLVHRLLQSLPDLPADIRANAADRFLLRNADDWSPQERDALAARVLEVISDDR 1045

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                 +  S +EV + G++    + ++ISG+ID++ ++   + I +YKT+H  P+ +   
Sbjct: 1046 FAAVFAPGSRAEVPIVGRLQRHGEPVLISGQIDRLVVTDAEVLIVDYKTNHAPPRSLAET 1105

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
            P  ++ QL++Y  +L   YP + +   L++   P++  I    L+   A ++
Sbjct: 1106 PPAYVRQLALYRAVLSLLYPQRIVRAALLWTEAPEIMEISAPALDAEQAALT 1157


>gi|256370501|ref|YP_003108012.1| double-strand break repair helicase AddA [Brucella microti CCM 4915]
 gi|256000664|gb|ACU49063.1| double-strand break repair helicase AddA [Brucella microti CCM 4915]
          Length = 1180

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 307/962 (31%), Positives = 468/962 (48%), Gaps = 44/962 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P +  +P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLPVPDAVLDDAM 1157

Query: 945  AE 946
              
Sbjct: 1158 GA 1159


>gi|239833145|ref|ZP_04681474.1| double-strand break repair helicase AddA [Ochrobactrum intermedium
            LMG 3301]
 gi|239825412|gb|EEQ96980.1| double-strand break repair helicase AddA [Ochrobactrum intermedium
            LMG 3301]
          Length = 1195

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 304/961 (31%), Positives = 465/961 (48%), Gaps = 44/961 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG     S + +  DLWP+P F    ++  +S+  + G       A  L++  +  
Sbjct: 239  LHRAFGFDPQTSEDDLLADLWPIPEFSDDALDLIMSI--QKGASRAQDFALQLRRFDKVT 296

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               +R ++L + FL     P+    + +  + K  PD +E    +     +  DR    +
Sbjct: 297  GQRDREAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPDFEEDFDAAAARVEQGLDRLKELR 356

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K+K  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 357  LVRLNLAALTLVDNLLQRYHDLKRKRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 416

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P+   
Sbjct: 417  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNISRTLFAVGDEKQSIYSFQGAVPEDFA 476

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    RA +A  KF  + L  SFRS  D+L  VD+VF+ PE  +GL+        H 
Sbjct: 477  AQGRSVSLRAEDAELKFERVSLNFSFRSAPDVLQAVDEVFARPEAHRGLAG----ATVHE 532

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R    G V++W+ +      +   + + W    D L     A  LA +IA TI + + 
Sbjct: 533  AIRADAPGEVEIWDMLTP----EEVEEPDDWREPVDHLAA--PAVRLADQIAATIRHWLD 586

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +  I   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 587  SGEIIP-GQNRRIMPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLRLTSHIAI 642

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F++   R  + T++E + + +  G 
Sbjct: 643  QDLMALGRFVLQPSDDLSLASVLKSPLFGWDDDQLFELAHPRGSSLTLFERLYQVS-RGD 701

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            +    V K +    ++A      +F+  IL A   R++ ++R G E  D++DEF N+ L 
Sbjct: 702  AALAEVHKTLSRWRNMADTMPVFEFYARILSADGARRKLLARLGPEAGDIIDEFQNYALS 761

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  L+   P IKR      NEVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 762  AERAGLPGLQAFLETLDAASPEIKRELDQGRNEVRIMTVHAAKGLEGAVVFLVDPGSAVW 821

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+      + +P +   +W P +  +    +  I  LK   +EEY RLLYVGMT
Sbjct: 822  TGSRAPKLIPFDFSDGNPPVKGYLWQPNAGYQTGFTAAQIDKLKTRAEEEYRRLLYVGMT 881

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +                         E     K    ++    +A     
Sbjct: 882  RAEDRLIICGYRGARESG-----------ETWHRLAEDALAAKAETFVHPVLKLAARRYR 930

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
            + P       ++   +      +P+    PIK +   P  L PS      + + E  L  
Sbjct: 931  NTPRGMVEIVDQDKTEDHALPSLPRDYLRPIKPETGLPRPLAPSGASALIEADEEPPLDT 990

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +P+  R+     Y  + A  WP  E +  
Sbjct: 991  FSPVLGPGNGSPAFALRRGTAIHMLLQYLPDVPQADRETLAHDYLDRIAADWPETERQMA 1050

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV++ G I    +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1051 WQSVRTILDDPTYAPVFAQGSRGEVAIMGTIELGGRDHAVSGQIDRISVGENRVLIVDYK 1110

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ I+ +P+ + AQL++Y ++L   YP + +   L++   P +  +P   L++  
Sbjct: 1111 TNRPPPKTIDAVPFAYRAQLALYRELLAPLYPGRIVETALLFTEGPFLMPLPDAILDEGV 1170

Query: 945  A 945
            A
Sbjct: 1171 A 1171


>gi|222084227|ref|YP_002542753.1| double-strand break repair helicase AddA [Agrobacterium radiobacter
            K84]
 gi|221721675|gb|ACM24831.1| double-strand break repair helicase AddA [Agrobacterium radiobacter
            K84]
          Length = 1188

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 386/962 (40%), Positives = 548/962 (56%), Gaps = 25/962 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L  R GLS  ++   I +  WPLP    + +  Y++L+ + G     + A  L+ A +  
Sbjct: 240  LLARLGLSAGDTEAGIAEQYWPLPGLSGATLELYLTLADQKGGAKAQEVAYALRLAKRET 299

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                R  +L    LT K  P+ +     + +   +P L E +  ++   +  RDR    +
Sbjct: 300  HPVARAEILEKVMLTGKGEPKSDSQFFVKAMLADAPALAEAVAAARAHVVTCRDRLKLMR 359

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M+++T A+L LA  LN  YEE KK+   LDFEDLI  T DLL K+DV  WI YK+DQ I+
Sbjct: 360  MYRATRAALVLADRLNRDYEELKKRRSQLDFEDLITRTADLLTKKDVGPWIHYKLDQGID 419

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS IQW VI+SL EDFF G++   + RT+FAVGDEKQSIYSF GA P+R  
Sbjct: 420  HILVDEAQDTSPIQWSVIQSLAEDFFSGESARQTLRTIFAVGDEKQSIYSFQGARPERFS 479

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             E    ++R   +GQ+FS I LPLSFRSTAD+L  VD VF+ PENA+GLS      + HR
Sbjct: 480  EESDRTRRRVATSGQQFSSIRLPLSFRSTADVLAAVDHVFTAPENARGLSAV-DEPVVHR 538

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            SSRIG  G V LWE +      +   ++E WT+ FDS P+ + A+ILARR+A TI N+IG
Sbjct: 539  SSRIGHPGAVDLWEMIAP----EPAAKEEDWTAPFDSTPESAPAAILARRMAQTIGNLIG 594

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +TI   GK R I+A DILVLVRKR     +  LTR LK    I V G DR +LT H+AI
Sbjct: 595  RETIIEKGKARFIEAGDILVLVRKRD--SFVNALTRALKRRNNIPVAGADRLVLTSHIAI 652

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L  EDDLS   +LKSPLF+  EDD+F +   R   E+V+ ++QKFA+ G 
Sbjct: 653  QDLLALGRFLLLPEDDLSLSALLKSPLFDLGEDDVFAVAALRGSDESVWNHLQKFADDGN 712

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +F+H +  +   + +++  S HDF+  +LG+  GR+QF++R G EV D+LDEFL FTL 
Sbjct: 713  ERFRHAVDRLKTFLALSKSLSVHDFYARVLGSFGGRRQFLARLGTEVSDILDEFLTFTLD 772

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E +    LQ  +S LE   PT+KR      NEVRIMTVH +KGLE+P+VFLVD G + F
Sbjct: 773  HETSGLPGLQSFVSTLELEAPTVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGGKAF 832

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +H H+ KM ++ +   D  +P+W+P S   N++       L+  T+EEY RLLYVGMTRA
Sbjct: 833  THTHLPKMRLIETGKQDIPLPVWVPVSALANSLTQADTARLQSLTEEEYRRLLYVGMTRA 892

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +D+LIIC +       + N  TW+ M+  +   D   +   ++ S    EW    W    
Sbjct: 893  ADRLIICGYRGI----RENADTWHAMISAALRQDGE-RCTPVSFSGPDGEWQGLSWRVSQ 947

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE------- 771
             E +  ER E  +  +D   +P  L  P+    N P  L+PS   T      +       
Sbjct: 948  VERS-FERMEQAETTVDRGALPAGLSRPLPPQRNLPRPLSPSGAGTVIDDEADNLLVTSP 1006

Query: 772  ---SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                    +++  +G  IH++LQ +  +    R      Y  + A+ WP  E   L+ S+
Sbjct: 1007 LFTEKAKSDRSLEKGRFIHRMLQTLPEIASADRAEAARRYAERAARFWPQAERDALIGSV 1066

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
              LL +P +    S  + +EVS+ G +    +   +SGRID++++    + I +YKT+  
Sbjct: 1067 MALLSHPELQGVFSAHAQAEVSIMGTLTLDDQAYAVSGRIDRLTVLDDRVVILDYKTNRV 1126

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
             P+  E IP+ H AQL+IY +IL   YP K + C+L+Y     +  +    L    AE+ 
Sbjct: 1127 PPRSAEQIPFAHRAQLAIYREILSPLYPGKRIDCVLVYTENASIHTLSGEALALTLAELK 1186

Query: 949  TK 950
            TK
Sbjct: 1187 TK 1188


>gi|254713494|ref|ZP_05175305.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
 gi|254716150|ref|ZP_05177961.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261217923|ref|ZP_05932204.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261321227|ref|ZP_05960424.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
 gi|260923012|gb|EEX89580.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1]
 gi|261293917|gb|EEX97413.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1]
          Length = 1180

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|254694724|ref|ZP_05156552.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str.
            Tulya]
 gi|261215053|ref|ZP_05929334.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str.
            Tulya]
 gi|260916660|gb|EEX83521.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str.
            Tulya]
          Length = 1180

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 306/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMT+H AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTMHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|148560369|ref|YP_001259904.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840]
 gi|148371626|gb|ABQ61605.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840]
          Length = 1180

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 469/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++   LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGFLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|227823893|ref|YP_002827866.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium
            fredii NGR234]
 gi|227342895|gb|ACP27113.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium
            fredii NGR234]
          Length = 1189

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 348/966 (36%), Positives = 539/966 (55%), Gaps = 27/966 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+   GL+  ES E +    WPL     + + +Y+ L++  G    ++ A+ L+ A + +
Sbjct: 235  LRAALGLAPTESAESVMAGAWPLAGLNGAALEQYIGLALSLGGAKPVEIAEGLKAACKVK 294

Query: 61   CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
              EERF+ L S F      P+       + +  ++P L   + +++   +   DR +  +
Sbjct: 295  DAEERFASLLSVFFNGGGKPKAESAFFNKAMLAQAPHLAPLIDEARQHIVSTADRLSIVR 354

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M+++T A+L LA+ LN  YE+ KK+   LDFEDLI  T  LL + DV AW+ YK+DQ I+
Sbjct: 355  MYEATRAALILAERLNGDYEDLKKRRSQLDFEDLINRTAALLSRSDVGAWVHYKLDQGID 414

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW +I++L  DFF G+   +  RT+FAVGDEKQSIYSF GA P+R  
Sbjct: 415  HILVDEAQDTSPAQWTIIQALAADFFAGETARADDRTIFAVGDEKQSIYSFQGARPERFS 474

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            RE  + ++R     + FS I L LSFRST D+L+ VD VF+ P NA+GLS  +   + H 
Sbjct: 475  RESVLTERRVRAGNKYFSPIRLQLSFRSTLDVLSAVDTVFANPGNAKGLSARNEAIV-HA 533

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            S+RIG  G V +W+ +      +    ++ WT+ FD+ P+ +  +ILARRIA  + + IG
Sbjct: 534  SNRIGHPGAVDIWDIIAP----EPTTSEDDWTAPFDATPERAPVNILARRIAAVLEDWIG 589

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +T+   G +R ++  D++VLVRKR     +  LTR LK    I V G DR +LT+H+AI
Sbjct: 590  KETVIEKGVRRPMRPGDVIVLVRKRD--AFVNALTRALKRRGNIPVAGADRLVLTNHIAI 647

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L  EDDLS   +LKSPL N  EDD+F +  +R E E++++ +Q+      
Sbjct: 648  QDLLALGRFVLLPEDDLSLAALLKSPLVNLGEDDVFDLAARRAEGESLWQRLQQLGAEEK 707

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            S++  V++ +     +A+   PHDF+  +LGA  GR+ F++R G+EV D+LDEFL F L 
Sbjct: 708  SRYCRVVRILAGYGELARDLLPHDFYARVLGAHGGRRAFLARLGSEVSDILDEFLTFALD 767

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E++    LQ  IS LE   PT+KR      +EVR+MTVH AKGLE+PVVFLVD G + F
Sbjct: 768  HERSGLPGLQAFISTLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAF 827

Query: 599  SHKHIKKMHIMPSLNDDPG---IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              + +  + ++           +P+W     + N++++   + LK+  +EEY RLLYVGM
Sbjct: 828  VRQQVSDLRLLEKPQAGGAPVIVPVWRAPGSASNSLIAADNERLKRLAEEEYRRLLYVGM 887

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA+D+LI+C +       + N  TW+ MV  +  +D + + +    S   +EW  + W 
Sbjct: 888  TRAADRLIVCGYRGQ----RQNLDTWHAMVQGTLAHDPKGRAVPTDFSAGGEEWTGHAWR 943

Query: 716  THH-PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL- 773
                P   P   +   K       +P  LF+P+      P  L PS              
Sbjct: 944  EAPVPVTIPESGDAKSKPDAAASILPPALFTPLPPPRRLPRPLAPSGTSVAIDDPDREAI 1003

Query: 774  ---------LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                      +   +  RG I+H+LLQV+ T+ E KR+     Y  +    WP  E + L
Sbjct: 1004 VGSALFAEQATPKFSMLRGAILHRLLQVLPTIEEAKRREAAERYLGRAVPGWPETERRAL 1063

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              ++  +L++  +       S +EVSV G +    ++  ISGR+D+++I+   + I +YK
Sbjct: 1064 TAAVMDVLDHTELQPLFGEQSRAEVSVMGTLKLGSQEFAISGRLDRLAIAGDTVTIADYK 1123

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+  VP  ++ +P  +  QL+IY  +LK  YP K    +LI+   P V ++P   L+++ 
Sbjct: 1124 TNRDVPASVDDVPSVYRRQLAIYRDLLKPLYPGKQFRSVLIFTEGPAVRVLPDTMLDRSL 1183

Query: 945  AEISTK 950
             E++TK
Sbjct: 1184 EELATK 1189


>gi|254705105|ref|ZP_05166933.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
            686]
 gi|261755810|ref|ZP_05999519.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
            686]
 gi|261745563|gb|EEY33489.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str.
            686]
          Length = 1180

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K +  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +LGA   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLGADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P++ +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMEAEPGLPRPLTPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|163844120|ref|YP_001628524.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445]
 gi|163674843|gb|ABY38954.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445]
          Length = 1180

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 306/966 (31%), Positives = 469/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K +  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LL+ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLEYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|159184128|ref|NP_353063.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58]
 gi|159139465|gb|AAK85848.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 1185

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 353/963 (36%), Positives = 542/963 (56%), Gaps = 27/963 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+    ++  E+ E   +  WPLP      ++ Y++L+ E G   +++ A  L++A +  
Sbjct: 237  LRQEMQIAAGETEETAAEAFWPLPGLSGLVLDTYLTLADEVGGSRVIEVAYALREAKRQP 296

Query: 61   CIEERFSLLSSFFLTQKFTPQKNII--TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                R  L+ +  LT K   + +     + + K +PDL + L  ++D  +  R+R+   +
Sbjct: 297  DPVRRMELIEAALLTAKGEKKSDAYVINKGMQKSAPDLVDALTLARDHVVACRNRYRLVR 356

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M  +T ++L LA+ L   +E+ KK+   LDFEDLI    +LL +    AW+ YK+DQ I+
Sbjct: 357  MLVATKSALVLAERLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGID 416

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS +QW +I+SL  DFF G++     RTLFAVGDEKQSIYSF GA P+R  
Sbjct: 417  HILVDEAQDTSPVQWSIIQSLAADFFNGESARMGRRTLFAVGDEKQSIYSFQGARPERFS 476

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            +E+   ++R     Q F  I LPLSFRST D+L  VD+VFS P+NA GLS D+   + HR
Sbjct: 477  QERDETKRRVDQVEQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNE-PVEHR 535

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            S+R G  GTV++W+ V  +        +E WT+ FD+L + + A+I+ARRIA  I++MIG
Sbjct: 536  SNRAGHPGTVEVWDMVAPETTED----EEDWTAPFDALRESAPATIVARRIAARIADMIG 591

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
              TI   G +R ++  DILVLVRKR     +  LTR LK    I V G DR  LTDH+A+
Sbjct: 592  NQTIIEKGVERAVEPGDILVLVRKR--AAFVNALTRELKRRKNIPVAGADRLRLTDHIAV 649

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF++  EDDLS   +LKSPLFN +EDD+F+I   R E E+V++ +Q  +    
Sbjct: 650  QDLLALGRFVVLPEDDLSLAALLKSPLFNLTEDDVFEIAATRSEAESVWQRLQVLSGEET 709

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            S+   V   +   I +++  + HDFF  +L    GR++F+ R GNE  DVLDEFL+F L 
Sbjct: 710  SRLSIVTDKLRHFISLSKTATVHDFFAAVLTLHDGRKKFLGRLGNEASDVLDEFLSFALD 769

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E+     LQ  +S LE   P +KR    +  EVRIMTVH +KGLE+PVVF+VD GS+ F
Sbjct: 770  HERTGLPGLQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVFVVDGGSKAF 829

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +H H+ K+  +    D    P+W+P S   N+++    + LK + ++EY RLLYV MTRA
Sbjct: 830  NHSHVPKLRFV--EGDGDAFPVWLPGSGFSNHLIRSDEERLKTAAEDEYRRLLYVAMTRA 887

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +D L++C +       K N   W+ +V  +   ++         S + +EW    W    
Sbjct: 888  ADHLVVCGYRGQ----KENPECWHAIVKAALAENQDH-CQPQAFSADGEEWQGLVWRKSE 942

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL---- 774
                    +    Q  ++  +P  L +P+    + P  L+PS   T      + L     
Sbjct: 943  ARPALAPHKPAEPQQEEDHTLPPGLLAPLPALPSLPRPLSPSGAGTIIDDGADDLAVRSP 1002

Query: 775  -------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                   + +    RG ++H++LQ +    E +R+     Y  + A+ WPA + + L+ +
Sbjct: 1003 LFGEKTEASSLALQRGKLVHRMLQALPDFAESEREEAARRYAERAARFWPATDRERLIQA 1062

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
            + R+L  P +  A S +S +EVS+ G +   ++   +SGRID++++ +  + + +YKT+ 
Sbjct: 1063 VLRVLSEPAVQPAFSANSRAEVSIMGTMTLGRQHYAVSGRIDRLAVERDRVILVDYKTNR 1122

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
              P+E   +P++H+AQL+IY +IL   YP K  VC LIY        +  + + +A A I
Sbjct: 1123 VPPREARELPFSHVAQLAIYREILAPLYPGKEFVCALIYTESAAFVRVDDDAMAEALAAI 1182

Query: 948  STK 950
             TK
Sbjct: 1183 KTK 1185


>gi|23502951|ref|NP_699078.1| UvrD/Rep family helicase [Brucella suis 1330]
 gi|161620015|ref|YP_001593902.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365]
 gi|260567425|ref|ZP_05837895.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
 gi|23348986|gb|AAN30993.1| helicase, UvrD/Rep family [Brucella suis 1330]
 gi|161336826|gb|ABX63131.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365]
 gi|260156943|gb|EEW92023.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
          Length = 1180

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K +  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKCRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +LGA   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLGADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P++ +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMEAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|256060066|ref|ZP_05450248.1| ATP-dependent nuclease subunit A [Brucella neotomae 5K33]
 gi|261324043|ref|ZP_05963240.1| double-strand break repair helicase AddA [Brucella neotomae 5K33]
 gi|261300023|gb|EEY03520.1| double-strand break repair helicase AddA [Brucella neotomae 5K33]
          Length = 1180

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 306/966 (31%), Positives = 469/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+  F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVLEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|225626478|ref|ZP_03784517.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo]
 gi|256158600|ref|ZP_05456490.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
 gi|256254011|ref|ZP_05459547.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|260169510|ref|ZP_05756321.1| double-strand break repair helicase AddA [Brucella sp. F5/99]
 gi|261221152|ref|ZP_05935433.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|261759038|ref|ZP_06002747.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|265997112|ref|ZP_06109669.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
 gi|225618135|gb|EEH15178.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo]
 gi|260919736|gb|EEX86389.1| double-strand break repair helicase AddA [Brucella ceti B1/94]
 gi|261739022|gb|EEY27018.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|262551580|gb|EEZ07570.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1]
          Length = 1180

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 307/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTERPFLLLVPDAVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|306837652|ref|ZP_07470521.1| double-strand break repair helicase AddA [Brucella sp. NF 2653]
 gi|306407210|gb|EFM63420.1| double-strand break repair helicase AddA [Brucella sp. NF 2653]
          Length = 1180

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 306/966 (31%), Positives = 470/966 (48%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226  LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284  GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDAAAARVKMGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+L L   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALALIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464  EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520  AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
               +   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGELIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630  QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+       D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +       + +  TW+ +V D+           +T         A     
Sbjct: 869  RAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
              P +     EE          +P     P+K +   P  L PS      + + E  L  
Sbjct: 918  KTPRSFIEINEEDQAGATSLPPLPLDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDL 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +   KR++    Y  + A  WP  E    
Sbjct: 978  SSPVLEPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ +E +P+ + AQL++Y ++L+  YP + +   L++   P +  +P   L+ A 
Sbjct: 1098 TNRPPPKTLEAVPFAYRAQLALYRELLRPLYPRRVVEAALLFTEGPFLLPVPDTVLDDAM 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 GALKDT 1163


>gi|153008153|ref|YP_001369368.1| double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC
            49188]
 gi|151560041|gb|ABS13539.1| Double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC
            49188]
          Length = 1180

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 308/966 (31%), Positives = 463/966 (47%), Gaps = 44/966 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   F      S + +  DLWP+P F    +   +S+  + G       A  L++  +  
Sbjct: 226  LHRAFRFDPQTSEDDLIADLWPIPEFSDDALELIMSI--QKGASRAQDFALQLRRFEKVT 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               +R ++L + FL     P+    + +  + K  PD +E    +     +  DR    +
Sbjct: 284  SQRDREAVLRAAFLKTTGEPKSGSYVGSAAVKKLLPDFEEDFDAAAARVEQGLDRLKELR 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344  LVRLNLAALTLIDNLLQRYHDLKRQRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P+   
Sbjct: 404  HILVDEAQDTSPDQWQVIRMLSEEFFSGVGQRNISRTLFAVGDEKQSIYSFQGAVPEDFA 463

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + R    RA +A  KF  + L  SFRS  D+L  VD+VF+ PE  +GL+        H 
Sbjct: 464  AQGRSVSLRAEDAELKFERVSLNFSFRSAPDVLQAVDEVFARPEANRGLAG----ATVHE 519

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R    G V++W+ +      +   + + W    D L     A  LA +IA TI + + 
Sbjct: 520  AIRSDAPGEVEIWDMLTP----EVVEEPDDWREPVDHLAA--PAVRLADQIAATIRHWLD 573

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574  RGEPIP-GQNRRIMPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLRLTSHIAI 629

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L   DDLS   +LKSPLF + +D +F++   R    T++E + + +  G 
Sbjct: 630  QDLMALGRFVLQPSDDLSLASVLKSPLFGWDDDRLFELAHPRGSGLTLFERLYQVS-RGD 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            +    V K +    ++A      +F+  IL A   R++ ++R G E  D++DEF N+ L 
Sbjct: 689  AALAEVHKTLSRWRNMADTMPVFEFYARILSADGARRKLLARLGPEAGDIIDEFQNYALS 748

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+     LQ  +  LE   P IKR      NEVRIMTVH AKGLE  VVFLVD GS V+
Sbjct: 749  AERAGLPGLQAYLETLEAASPEIKRELDQGRNEVRIMTVHAAKGLEGAVVFLVDPGSAVW 808

Query: 599  SHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     K+      ND P +   +W P +  +    +  I+ LK   +EEY RLLYVGMT
Sbjct: 809  TGSRAPKLIPFDFSNDSPSVKGYLWQPNAGYQTGFTTAQIEKLKTRAEEEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LIIC +  T                      E     K    ++    +A     
Sbjct: 869  RAEDRLIICGYRGTRESG-----------ETWHRLVEDALATKAETFVHPVLKVAARRYR 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
            + P       E+   +       P +   PIK +I  P  L PS      + + E  L  
Sbjct: 918  NTPRGMVDIAEQDRTEDHALPSFPDEYREPIKPEIGLPRPLAPSGASALIEADEEPPLDS 977

Query: 776  -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG  IH LLQ +  +P+  R+     Y  + A  WP  E +  
Sbjct: 978  FSPVLGPGNGTPAFALRRGTAIHMLLQYLPDVPQDGRETLARDYLGRIAADWPETERQIA 1037

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              S+  +L++P      +  S  EV++ G I    +D  +SG+ID+IS+ +  + I +YK
Sbjct: 1038 WQSVRTILDDPTYAPVFAEGSRGEVAIMGTIELGGRDHAVSGQIDRISVGEDRVLIIDYK 1097

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+   P+ IE +P+ + AQL++Y ++L   YP + +   L++   P +  +P   L++A 
Sbjct: 1098 TNRPPPKTIEAVPFAYRAQLALYRELLAPLYPGRIVETALLFTEGPFLMPLPDVVLDEAL 1157

Query: 945  AEISTK 950
              +   
Sbjct: 1158 QSLKDS 1163


>gi|146337257|ref|YP_001202305.1| helicase-exonuclease type V family protein AddA subunit
            [Bradyrhizobium sp. ORS278]
 gi|146190063|emb|CAL74055.1| putative helicase-exonuclease type V protein family, addA subunit
            [Bradyrhizobium sp. ORS278]
          Length = 1156

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 267/945 (28%), Positives = 451/945 (47%), Gaps = 28/945 (2%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
             G+   E+ + I +D+   P    ++  +  +  ++ G  T  K+A  L+ A       +
Sbjct: 230  LGIGAGETLDAIERDILDGPNLPRANWTEIAA-RLDGGAKTDQKQADQLRAAL-AFSGSD 287

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
            R       FLT    P+++++T++  + +P L             + ++     +   T 
Sbjct: 288  RVDEYLRVFLTDDKEPRRSVLTKKFAESNPGLAGLFDAEARRLDHLIEKRRAAVVRDRTE 347

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            A L +A    A+Y   K +  +LD++DLI  T  +L +   + W+ YK+D+ ++H+LIDE
Sbjct: 348  ALLQIATAAAANYRREKDERGLLDYDDLIDKTLVMLNR-VSAGWVHYKLDRGVDHVLIDE 406

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
             QDTS  QW+++  + E+F  G        RT+FAVGDEKQSI+SF GA+P      +R 
Sbjct: 407  AQDTSPRQWDIVAHIIEEFTSGAGARDGLTRTIFAVGDEKQSIFSFQGADPHEFDARRRQ 466

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             QKR T+AG  F  +    SFRS   +L  VD VF   E    +         H +    
Sbjct: 467  LQKRFTDAGLLFDPVSFTYSFRSGPTVLHAVDHVFREREVYSSIHSPDIGYPIHNALTDA 526

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                V+LW       +     + E W + FD +   S    L+RRI   I  +I   T+ 
Sbjct: 527  GPSLVELWSLC----ERDDRKEIEGWRAPFDGVSVTSPEVKLSRRIQAEIKRLIRVGTMT 582

Query: 364  -SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
              +G +R +   D+L+LVR+R        + + LK    I V G DR  LT+H+AI DLM
Sbjct: 583  GHDGARRRLSYGDMLILVRRRGTA--FDAVIQALK-HAGIPVAGADRLKLTEHIAIIDLM 639

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L   +L  +DDL+    LKSPLF   +DD+FK+  QR    ++ E +   A     + Q
Sbjct: 640  NLADALLLPQDDLALATALKSPLFGLDDDDLFKLAWQRR--GSLREALSAHA-ADDPRLQ 696

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             V++ + +    A   +P  F+  +LG   GR++ ++R G+E  D LDEFL   L  E+ 
Sbjct: 697  AVVRRLQQCERRAAEDTPFAFYAWLLGGDGGRRRILARLGHEANDALDEFLELALSYERK 756

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            + +SLQ  ++ L      +KR    + +EVR+MTVH AKGLE+ VVFLVDT S     + 
Sbjct: 757  APASLQGFVAWLRAADTEVKRDMEISRDEVRVMTVHGAKGLEASVVFLVDTTSSPADSQR 816

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
               + ++   + D  I +W  +       V      + K T++EY RLLYV MTRA+D+L
Sbjct: 817  ---LRLIHVPHGDREIVVWAGRKADDPQAVVAARAAMLKETEDEYRRLLYVAMTRAADRL 873

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            +I       N       +WYD++              L   + + E    +      +  
Sbjct: 874  VIGG-CMPGNMNNVRGGSWYDLMARGLDAAG------LQVEVIETEDGPVKRYARPEDIA 926

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--ESLLSDNQTF 780
               ++E  +      ++P  L +       +  +L PS   +  +     ESL + +   
Sbjct: 927  ETAKDEARQMAESAVELPAWLRTAAVEAPGDVAVLRPSDPSSDERPVRTGESLAARSLAM 986

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
             RG ++H+LLQ +  +P  +R++    Y  +NA  WP  E   L   +  ++ +P     
Sbjct: 987  QRGTLVHRLLQSLPDVPPERRRDAALRYLLRNAPDWPEDERDKLTARVLTVIADPRFAAV 1046

Query: 841  MSCDSYSEVSVSGKINCPKKDI-IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
             +  S +EVS+ G++  P +   ++SG+ID++ +++  + I ++KT+   P E+  +P  
Sbjct: 1047 FAPGSRAEVSIVGRLAHPGQPRTLVSGQIDRLVVTEAEVLIVDFKTNQQPPSELADVPEA 1106

Query: 900  HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            ++ QL++Y  +L   YP +++   L++   P    +P + L+   
Sbjct: 1107 YLRQLALYRAVLGQLYPGRAVRAALLWTEVPDFMELPPSALDAVL 1151


>gi|148251712|ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit A [Bradyrhizobium sp.
            BTAi1]
 gi|146403885|gb|ABQ32391.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bradyrhizobium sp.
            BTAi1]
          Length = 1156

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 267/945 (28%), Positives = 458/945 (48%), Gaps = 28/945 (2%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
             G++ +E+   I +D+   P    +D  +  +  ++ G  T  K+A  L+ A      ++
Sbjct: 230  LGIAPDETLGAIEQDILDGPNLPRADWTEIAA-RLDGGAKTDQKQADQLRAALAFSGSDQ 288

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
                    FLT+   P+K+++T++    +P L    +       ++ ++     +   T 
Sbjct: 289  V-DEYLRVFLTEDKEPRKSLLTKKFADSNPGLAGLFESEARRLDRLIEKRRAAVVRDRTE 347

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            A L +A    A+Y   K++  +LD++DLI  T  +L +   + W+ YK+D+ ++H+LIDE
Sbjct: 348  ALLQIATAAAANYRREKEERGLLDYDDLIDKTLVMLNR-VSAGWVHYKLDRGVDHVLIDE 406

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
             QDTS  QW+++  + E+F  G        RT+FAVGDEKQSI+SF GA+P      +R 
Sbjct: 407  AQDTSPRQWDIVAHIIEEFTAGAGAREGLTRTIFAVGDEKQSIFSFQGADPHEFDARRRQ 466

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             QKR T+AG  F  +    SFRS   +L  VD VF   E    +         H S    
Sbjct: 467  LQKRFTDAGLLFDPVSFTYSFRSGPTVLHAVDHVFREREVYSSIHSPDIGYPVHNSLTDA 526

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                V+LW       +     + E W + FD +   S    LARRI   I  +I   T+ 
Sbjct: 527  GPSLVELWSLC----ERDDRKEIEGWRAPFDGVSVTSPEVKLARRIQAEIKRLIRAGTMT 582

Query: 364  -SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
              +G +R +   D+L+LVR+R        + + LK    I V G DR  LT+H+AI DLM
Sbjct: 583  GHDGARRRLSYGDMLILVRRRGTA--FDAVIQALK-HAGIPVAGADRLKLTEHIAIIDLM 639

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L   +L  +DDL+    LKSPLF   +DD+FK+  QR    ++ + +   A     + Q
Sbjct: 640  NLADALLLPQDDLALAIALKSPLFGLDDDDLFKLAWQRR--GSLRDALTAQA-ADDPRLQ 696

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             V++ + +    A   +P  F+  +LG   GR++ ++R G+E  D LDEFL   L  E+ 
Sbjct: 697  AVLRRLQQCERRAAEDTPFAFYAWLLGGDGGRRRILARLGHEANDALDEFLELALSYERK 756

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            + +SLQ  ++ L      +KR    + +E+R+MTVH AKGLE+ VVFLVDT S     + 
Sbjct: 757  APASLQGFVAWLRAADTEVKRDMEISRDEIRVMTVHGAKGLEASVVFLVDTTSSPADSQR 816

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
               + ++   + D  I +W  +       V+     + K T++EY RLLYV MTRA+D+L
Sbjct: 817  ---LRLIHVSHGDQEIVVWAGRKSDDPQPVATARAAMLKETEDEYRRLLYVAMTRAADRL 873

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            +I       N       +WYD++              L   + + E    +      +  
Sbjct: 874  VIGG-CMPGNMTNIRGGSWYDLMARGLDAAG------LQVEVIETEDGPIKRYARAEDIA 926

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT--NLESLLSDNQTF 780
               ++E  + +    ++P  L +       E  +L PS      +   + ESL + +   
Sbjct: 927  ETAKDEARRMVEMPVELPAWLRTVAAETPGEVAVLRPSDPSADERPVRSGESLAARSLAM 986

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
             RG ++H+LLQ +  +   +R++    Y  +NA  WP ++   L   +  ++++P     
Sbjct: 987  QRGTLVHRLLQSLPEVLPERRRDAALRYLLRNAADWPEEQRTGLAERVLAVIQDPRFAAV 1046

Query: 841  MSCDSYSEVSVSGKINCPKKDI-IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
             +  S +EVS+ G++  P +   ++SG+ID++ ++   + I ++KT+   P ++  +P  
Sbjct: 1047 FAPGSRAEVSIVGRLALPGQPRALVSGQIDRLVVTGSEVLIVDFKTNQQPPSDLAEVPPA 1106

Query: 900  HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            ++ QL++Y  +L   YP +++   L++   P+   IP + L+   
Sbjct: 1107 YVRQLALYRAVLGQLYPQRAVRAALLWTEAPEFMEIPASALDAML 1151


>gi|83313261|ref|YP_423525.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum
            AMB-1]
 gi|82948102|dbj|BAE52966.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum
            AMB-1]
          Length = 1154

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 270/951 (28%), Positives = 463/951 (48%), Gaps = 27/951 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-QT 59
            L+ R GL   ++ + +        +FQ   + + V+ ++ TG+ +  K+ + + +     
Sbjct: 225  LRTRLGLEAGDTPDSLLAWATDEAHFQGEGLREAVA-ALLTGSDSDRKRGEAMARWLADP 283

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
               E  F+   + FLT +   +K + T+ + +  P +++ L    +   ++ +R    ++
Sbjct: 284  AGRENGFAGWCAQFLTAEGGIRKTLATKAVREGFPGVEDCLLAEAERLYRLTERLRAARI 343

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             ++T A LTL   L A Y  AK    ++D++DLI+   DLL +  V+ W+ YK+D  I+H
Sbjct: 344  AEATGALLTLGGALLASYRRAKTHRALMDYDDLILGARDLLARPGVAPWVLYKLDGGIDH 403

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+  QW V+  LTE+FF G+    + RT+FAVGD KQSIYSF  A+P+   R
Sbjct: 404  VLIDEAQDTNPDQWAVVEKLTEEFFAGRGARETLRTVFAVGDAKQSIYSFQRADPREFER 463

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +         AG K+ +++L LSFRS   +L  V+ VF+     +         I H  
Sbjct: 464  MREAFATHVPAAGGKWEVVDLNLSFRSAPAVLEAVNAVFAPGRPGRDGVAGDED-ITHLP 522

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             R GQ G V++W  V    + +   +  +W    + +  +S  + LAR +A  I  MI  
Sbjct: 523  HRGGQAGRVEVWPVV----EPRPADELPAWKPPVERIRGDSPRTRLARLMAARIRAMIDG 578

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            + + S G  R ++A D+LVLVR+R     +  L R LK+   + V G DR +LT+ +A+ 
Sbjct: 579  EVLESKG--RPVRAGDVLVLVRRRGG--FVEDLVRELKSRK-VEVAGADRMVLTEQMAVM 633

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            DLMALG F+L  EDDL+   +LK PL    ED +F +   R +   ++E +++       
Sbjct: 634  DLMALGNFLLLPEDDLTLATVLKGPLVGLGEDQLFTLAHHRGKDVGLWEALRQGVADEGG 693

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
             F+   + + EL+  A   SPH  +  +LG   GR++ ++R G E  D +DEF++ TL  
Sbjct: 694  VFEAAFRRLSELLAQADRVSPHTLYARVLGPLGGRRRLLARLGLEAEDSIDEFMSLTLAF 753

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E+    SLQ  +  LE     IKR       + VRIMTVH +KGL++P+VFL DT     
Sbjct: 754  ERAHPPSLQGFLHWLEAGALEIKRDLEQAGRDAVRIMTVHGSKGLQAPIVFLPDTMQVP- 812

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                 +   ++     +  +P W P+++  +++        K+S + EY RLLYV MTRA
Sbjct: 813  ----TRSPRLLWLGEGEGELPAWPPRAEDMDSVCRQGADARKQSREREYRRLLYVAMTRA 868

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             D+L++C        K + +  W+ +V  +                 +          + 
Sbjct: 869  EDRLVVCGWRGL---KAAPETCWHALVQCALAPTAAAFDDPFLAKAAETAEGPVLVLANA 925

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                P + +           +P       + +   P  L PS  + +  T    L   + 
Sbjct: 926  QTAPPEKEKGAGPGAGQSSPLPDWALLSAEPEPIPPRPLAPSRPEGEEPTVRSPLAEMDG 985

Query: 779  --TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
               + RG +IH+LLQ +  LP   R   +  +  + A      E   +   ++ +L++P 
Sbjct: 986  KPRWQRGKLIHRLLQTVPDLPPPDRSRAMLRFLARPAWGLETPEQLAIANEVSDILDHPG 1045

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            +    +  S +EV + G+I     D ++SGR+D++++S   + I +YKT+   P   + +
Sbjct: 1046 LAGLFAPGSRAEVPLVGRI----GDRVVSGRVDRLAVSDTEVVIADYKTNRRPPATPDEV 1101

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
            P  ++ Q++ Y   L   YP+  + C+L++   P +  IP  +L+ A A +
Sbjct: 1102 PELYVRQMAAYRLALACIYPSHRVRCVLVWTDGPLLTEIPSARLDDALAGL 1152


>gi|150398434|ref|YP_001328901.1| double-strand break repair helicase AddA [Sinorhizobium medicae
            WSM419]
 gi|150029949|gb|ABR62066.1| Double-strand break repair helicase AddA [Sinorhizobium medicae
            WSM419]
          Length = 1189

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 337/966 (34%), Positives = 519/966 (53%), Gaps = 27/966 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+    L+  ++ E I    WPL     + +  Y+ L+   G       A+  +      
Sbjct: 235  LRAALDLNPGDTPEAIMAAAWPLAGLNGAALVDYIGLASRLGGTKPTAIAEGFRTVRAIG 294

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                R+  L   FL     P+ +   +   + +++P L+  +++++   +   DR +  +
Sbjct: 295  DPAARYDRLLETFLNGGGKPKADSAFLNAAMRREAPHLESLIEEARSHLLACVDRLSIVR 354

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M+++T A+L LA+ LN  YE  KK    LDFEDLI  T  LL + DV AW+ YK+DQ I+
Sbjct: 355  MYEATRAALVLAERLNRDYESLKKARSQLDFEDLINRTAALLARSDVGAWVHYKLDQGID 414

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW +I+SL  DFF G    +  RT+FAVGDEKQSIYSF GA P+R  
Sbjct: 415  HILVDEAQDTSPAQWTIIQSLAADFFAGDTARADDRTIFAVGDEKQSIYSFQGARPERFS 474

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            RE+ + ++R     ++FS I L LSFRST D+L+ VD VF+   NA+GLS      + H 
Sbjct: 475  RERTLTERRVRAGNKRFSPIRLQLSFRSTVDVLSAVDTVFANIGNARGLSARDEAIV-HA 533

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            S+RIGQ G V LWE +      +     E WT+ FD+ P+ +  +ILARRIA  + + IG
Sbjct: 534  SNRIGQPGAVDLWEVIAP----EPAASDEDWTAPFDATPERAPVNILARRIAAVLEDWIG 589

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +T+   G +R ++  D++VLVRKR     +  L R LK    I V G DR +LT H+A+
Sbjct: 590  KETVIEKGVRRAMRPGDVIVLVRKRD--AFVNALMRALKRRGNIPVAGADRLVLTSHIAV 647

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L  EDDLS   + KSPL N  EDD+F++  +R+E E+++  +Q+      
Sbjct: 648  QDLIALGRFVLLPEDDLSLAALFKSPLVNLCEDDVFELAARRNEGESLWHRLQQAGVEET 707

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            S++   ++ +     +++  SPHDF+  ILGA  GR+ F++R G+EV D+LDEFL F L 
Sbjct: 708  SRYNATVRKLAAFSTLSRELSPHDFYARILGAHGGRRAFLARLGSEVSDILDEFLTFALD 767

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E++    LQ  IS LE   PT+KR      +EVR+MTVH AKGLE+PVVFLVD G + F
Sbjct: 768  HERSGLPGLQAFISTLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAF 827

Query: 599  SHKHIKKMHIMPSLNDDPGI---PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              + +  +  +     D  +   P+W     + N++++D  + LK   +EEY RLLYVGM
Sbjct: 828  VRQQVSDLRFLEKPQADQTLLTVPVWRAPGSAPNSLIADDNERLKMLAEEEYRRLLYVGM 887

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA+D+LI+C +       + N  TW+ MV  +   D   +          +EW    W 
Sbjct: 888  TRAADRLIVCGYRGQ----RQNVDTWHSMVQGTLAQDLMGRATPRLFRAAGEEWQGLAWR 943

Query: 716  THH-PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN----- 769
              H P + P     + +    +  +P+ LF+        P  L PS              
Sbjct: 944  ETHVPRDLPAADGASGEPEQAKAGLPRALFTAPPPPRRLPRPLAPSGTAIAIDEPDGSSI 1003

Query: 770  -----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                      +   +  RG I+H+LLQV+ ++   +R      Y  ++   WP  E   L
Sbjct: 1004 VGSALFTGKNAPKFSMLRGAILHRLLQVLPSIDAVERTAAAERYLARSVPRWPEAERLAL 1063

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              ++  +L +  +       S +EVSV G +    ++  +SGRID++++S   + I +YK
Sbjct: 1064 AATVMDVLGHAELQPLFGEHSRAEVSVMGTLKLGPREFAVSGRIDRLAVSGDTVTIADYK 1123

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T+  +P   E I   +  QL+IY ++LK  YP K   C+LI+   P + ++ +  L+++ 
Sbjct: 1124 TNREIPASAEDIAPVYRNQLAIYRELLKPLYPGKRFRCVLIFTEGPAIRVLSEAMLDRSL 1183

Query: 945  AEISTK 950
              ++TK
Sbjct: 1184 EALATK 1189


>gi|260463224|ref|ZP_05811426.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum
            WSM2075]
 gi|259031074|gb|EEW32348.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum
            WSM2075]
          Length = 1166

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 290/963 (30%), Positives = 462/963 (47%), Gaps = 34/963 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL-QQASQT 59
            L + F     ++ E I    WPLP F       +   +  T   ++L       ++A   
Sbjct: 221  LFDEFHFRPGQTAEGIAASAWPLPGFLPDYFTGFAQAAESTDARSVLNNILPYARRAFAE 280

Query: 60   QCIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                 R   L+  FL     P        + +  + PDL ++   +    I+  DR   +
Sbjct: 281  SDPVRRLQQLARAFLKTDGDPYDPAKAFKKALTDRLPDLADRYLSASSAIIETVDRLALF 340

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +M + T A+LT+A +L A YE  K+    LDF DLI  T +LL + D   W++YK+DQ I
Sbjct: 341  RMLEGTAAALTIADWLIARYEVLKRGRGFLDFNDLITRTVNLLARPDAGPWVQYKLDQGI 400

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKR 236
            +HIL+DE QDTS  QWEV++ L E+FF G        RT+FAVGDEKQSIYSF GA P  
Sbjct: 401  DHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQSIYSFQGAAPDS 460

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                + +   R  +A   F+ ++L  SFRST D+L+ VD+VF+ P   +G+S D    + 
Sbjct: 461  FADSRLLFSSRVRDAEASFADLKLTWSFRSTDDVLSAVDRVFADPVVRRGISHDPD-PLS 519

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
            H++ R    G V++W  +     +    + + WT   D     + A  +A  +A TI+  
Sbjct: 520  HKAIRTDAPGYVEVWPSIG----ADIVDEPDDWTQAIDH--AHAPAVRVAENVATTIAGW 573

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
            IG   I   G+ + ++  D+LVLVRKR                  I V G DR  L  H+
Sbjct: 574  IGNGEIIE-GRGKRLRPGDVLVLVRKRDS---FVHALTRALKRRDIPVAGADRLSLPGHI 629

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            A+KDL+ALGR ++  +DDLS   +L+SP+F+  E+ +F +  QR    ++   +++ A  
Sbjct: 630  AVKDLIALGRLLIQPQDDLSLAAVLRSPIFDLPEETLFALAAQRAPGLSLATSLRQHAGE 689

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                   V+  +      A F    +F+  +L     R++ I+R G E  D+LDEFL+F 
Sbjct: 690  -SEALAIVVAQLDIWTDEAAFKPVFEFYAGLLARDGVRRKMIARLGPEAGDILDEFLSFC 748

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            L  E+     L+  +S LE   P IKR      +EVR+MTVH AKGLE+PVVFLVD GS 
Sbjct: 749  LAEERTGLPGLEAFLSTLENAGPEIKREMDQTRDEVRVMTVHAAKGLEAPVVFLVDGGSA 808

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
             FS +H+ ++             +W   S   N          ++   +EY RLLYVGMT
Sbjct: 809  PFSDQHLPRLMPFDGSGWVGKGYLWRSASDVANGFSKAAAARARELADDEYRRLLYVGMT 868

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LI+C +     ++  N  TW+ +V  +       ++              Y +  
Sbjct: 869  RAEDRLIVCGYH---GKRAPNTGTWHSIVSRALIGAPESEQRAHPAGGE----PVYRFHV 921

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK--------- 767
                   L   E  +Q      +P  LF P+    + P  L+PS      +         
Sbjct: 922  TELPPVALATAEQARQTDAFGPLPTNLFRPLPPFEDLPRPLSPSGASALIEEGKETVVDK 981

Query: 768  --TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                L++         RGL +HKLLQ++  + E +R+     Y  +    WP  E +  L
Sbjct: 982  ASPVLDADAEPGFAVLRGLALHKLLQMLPGIAEDQREGAAARYLARTGAEWPPAEREKAL 1041

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
             S+  +L +P +    +  S +EV++ G +    K+  ISG+ID+++++   + I +YKT
Sbjct: 1042 ASVIAILADPYLGQLFAPSSRAEVAIMGSLEVRGKNRSISGKIDRLAVTPDAVSIVDYKT 1101

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            +   P  +  +P  ++ QL++Y  +L+  YP + +   L++   P++  +P   ++ A A
Sbjct: 1102 NRPAPAGLAEVPPAYLLQLALYRALLQPLYPGREVKAALLFTEAPRLIELPAGAMDDALA 1161

Query: 946  EIS 948
             ++
Sbjct: 1162 RLT 1164


>gi|316931471|ref|YP_004106453.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            DX-1]
 gi|315599185|gb|ADU41720.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            DX-1]
          Length = 1161

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 266/958 (27%), Positives = 447/958 (46%), Gaps = 32/958 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G++ ++S E   +D+   P    S+    V+ + E G+     +A+ L++A    
Sbjct: 224  LSATLGVAPDDSCEAADRDIVDGPNLPRSEW-AAVAATFEGGSANDQAQARRLREALALT 282

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +        F T+    +K++IT+++   +P L E+L++       + +R     + 
Sbjct: 283  DAAQ-IDAYLQVFFTKDSGLRKSLITKKLGDGAPGLAERLQREGARLGALLERRRALALR 341

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + T A L +A  +  +    K++  +LD++DLI  T  +L     + W+ +K+D+ ++H+
Sbjct: 342  ERTRALLVIAAQVAGNIAREKRERGLLDYDDLIDKTLAML-DSGAAGWVHFKLDRGVDHV 400

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            LIDE QDTS  QW+++  L ++F  G+       RT+FAVGDEKQSI+SF GA PK    
Sbjct: 401  LIDEAQDTSPKQWKIVARLIDEFTAGEGARDGIKRTIFAVGDEKQSIFSFQGAVPKEFAE 460

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             + + Q+R T AG  F  +    SFRS A IL  VD VF  P   + +  D    + H S
Sbjct: 461  WRDLLQRRFTGAGLTFEKVSFNYSFRSGAAILQSVDHVFRDPAIYRSIHADIDYPV-HAS 519

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                    + LW   V     Q     E W + FD++ + S    LA ++   IS +IG 
Sbjct: 520  LADAGPSLIDLWPLEVPDDRQQ----IEGWQAPFDAVSETSPEVRLADKVRGEISELIGR 575

Query: 360  DTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T     G++R +   D+L+LVR+R        + + LK    I V G DR  LT+H+AI
Sbjct: 576  GTRTGPVGQRRPLSYGDVLILVRRRGSA--FDAVIQALK-RGGIPVAGADRLKLTEHIAI 632

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             DLM L   +L  +DDL+    LKSPLF   +DD+FK+  QR                  
Sbjct: 633  IDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLAWQRKGPLRAALADHAAG---D 689

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNF 535
             +F  V + +      AQ  +P  F+  +LG      GR + + R G E  D LDEFL  
Sbjct: 690  QRFAAVQRRLESYAARAQVETPFGFYAWLLGGDGADSGRARILRRLGPEANDALDEFLEL 749

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             L  EQ    SLQ  ++ L +    IKR    + +EVR+MTVH AKGLE+PVVFL+DT S
Sbjct: 750  ALSFEQKRAPSLQGFMAWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTS 809

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIP--IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                 + +  + +         +P  +W  +     ++V      + + T++EY RLLYV
Sbjct: 810  SPADTQRLNLIRLPGGNAAPGSVPAMVWAGRKADDPSVVEQARSAMIEETEDEYRRLLYV 869

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
             MTRA+D+LI+       N  +    +WYD++     +     +    + + K      +
Sbjct: 870  AMTRAADRLIVGG-CMPGNRNEVRPHSWYDLISKGLESSGLAMQSVPPDGVIKRYCRPED 928

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---NL 770
                     P +             +P  L  P     +   +L PS  +   +      
Sbjct: 929  VIEETGSAMPSQEATVTS-------LPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPG 981

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
            ES  S ++   RG ++H+LLQ +  +    R      +  +NA  W +++   L   +  
Sbjct: 982  ESDASRSRALQRGTLVHRLLQSLPDIAAGDRSAAAGRFLARNAPDWNSEDRDALAAQVLG 1041

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
            L+ +          S +EV + G++      +++SG+ID++ +++  + I +YKT+H  P
Sbjct: 1042 LIADARFAAVFGPGSRAEVPIVGRLQRRGGPVLVSGQIDRLVVTETEVLIVDYKTNHAPP 1101

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
            +     P  ++ QL+ Y  +L   YP +++   L++    ++  I  + L+   A+++
Sbjct: 1102 RVEAEAPRAYVRQLARYRAVLGAIYPQRTVRAALLWTEAAEIMEISASALDAEQADLT 1159


>gi|154250594|ref|YP_001411418.1| double-strand break repair helicase AddA [Parvibaculum
            lavamentivorans DS-1]
 gi|154154544|gb|ABS61761.1| Double-strand break repair helicase AddA [Parvibaculum
            lavamentivorans DS-1]
          Length = 1156

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 266/953 (27%), Positives = 466/953 (48%), Gaps = 32/953 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT- 59
            ++    +  +E+   I  ++  LP   + +     +  + +G  T +K A+ L+      
Sbjct: 226  IRIALSVGADETTPGIRVEIAALPEAAMHN----AAEVLASGTKTDVKCAEALRAFLGAR 281

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                E        FLT++  P+  ++T  + KK PD++++L   Q+  I++  R     +
Sbjct: 282  ASRAENLDTYLGIFLTKEMKPRARLVTAALAKKHPDVEQELLAEQERIIRLHARLRAIGV 341

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             ++T A +TLA  +   +++AK    +LD++DLI  T DLL  R ++ W+ YK+D  I+H
Sbjct: 342  AEATEAIVTLAVEILETFDKAKHARALLDYDDLISKTRDLLTMRAMAPWVLYKLDGGIDH 401

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ILIDE QDTS  QW++I  L ++F  G       RT+FAVGDEKQSI+SF GA+P R   
Sbjct: 402  ILIDEAQDTSPEQWDIIARLADEFLSGSGARGVVRTIFAVGDEKQSIFSFQGADPARFDD 461

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             K   ++R   + Q++  + L  SFRS  ++L  VDKVF   +   GL+      I H +
Sbjct: 462  MKIYFERRVKASEQRWDYVPLTRSFRSVPEVLAAVDKVFESLKARSGLTASGNLDI-HIA 520

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             R    G V++WE        + +P    W +  D + + +  + LA RIA TI N + +
Sbjct: 521  HRELDAGLVEIWELEEPDEGQEASP----WDAPLDYMTEAAPMAKLAARIAATIRNWLDS 576

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              +  +   R I+A DIL+LVR+R     +  + R LK +  + V G DR +LT+ LA+ 
Sbjct: 577  KEVLISKG-RPIRAGDILILVRRRN--AFVGEMVRHLK-ELGVPVAGADRMVLTEQLAVM 632

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            DL+AL RF+L  EDDL+   +LKSP   F+E+++F +   R    T+++ +++ A     
Sbjct: 633  DLLALARFVLLPEDDLTLATVLKSPFAGFTEEEVFDLAWNRK--GTLWQSLKEKATRN-P 689

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            ++     ++  L+  A +  P++FF  +LG + GR + ++R G E  D +DEFL+  L  
Sbjct: 690  RYAEAAAFLLRLLERADYEPPYEFFAHVLGGEGGRTRLLARLGPEAADPIDEFLSLALEF 749

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            E+    +L+  +  LE+    IKR      +EVR+MTVH AKGLE+ +VF+ DT +    
Sbjct: 750  ERKHPPALEAFVHWLERGSSEIKRDMDQGRDEVRVMTVHGAKGLEAEIVFMPDTCAAPGG 809

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                  + +     D P + +W  + K  + + +      ++    EY RLLYV +TRA 
Sbjct: 810  SHDPALLSLPALEQDGPKLLLWPVRKKDEDEVSAGARALHREIQAAEYRRLLYVALTRAR 869

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            D+L I  + N +                    +  +   ++   I  ++    +      
Sbjct: 870  DRLYISGYRNATPPSSECWYEMVCETLKPAAREIVLPDGRMVWRIEGEQRRQVDSKAPSA 929

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSP---IKNDINEPYILNPSTIDTKGKTNLESLLSD 776
               P    E   +    +  P +  +P      D+ EP +L+P   D   +         
Sbjct: 930  AEEPSAPPEWAHRDAPLEPTPSRPLAPSRLPPEDLEEPSVLSPLAGDNTNR--------- 980

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
               F RG +IH+LL+ +  +   +R+     +  + A          +  ++ R+L++  
Sbjct: 981  ---FRRGSLIHRLLESLPDMEPAERRAAARRFLAQPAHGIDEAAQNEIEAAVFRVLDDAT 1037

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            +       S +EV V+G I    + ++I+G+ID++ +++ ++ I +YKT+   PQ +E +
Sbjct: 1038 IAHVFGKGSRAEVPVAGTIELGGRPLLIAGQIDRLCVTEDSVTIIDYKTNRPPPQTLEAV 1097

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
               +I Q++ Y  +L   YP + + C+L++   P +  +P   L KA      
Sbjct: 1098 VPAYIGQMAAYRALLAAIYPERMIRCVLLWTDGPALMELPAEMLEKALRAAKP 1150


>gi|192288510|ref|YP_001989115.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            TIE-1]
 gi|192282259|gb|ACE98639.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris
            TIE-1]
          Length = 1161

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 267/958 (27%), Positives = 449/958 (46%), Gaps = 32/958 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G++  +S E   +D+   P    S+    V+   E G+     +A+ L++A    
Sbjct: 224  LSATLGVAPGDSCEAADRDIVDGPNLPRSEW-AAVAAIFEGGSANDQAQARRLREALALT 282

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +        F T+    +K++IT+++   +P L E+L++       + +R     + 
Sbjct: 283  DAAQ-IDAYLQVFFTKDSGLRKSLITKKLGDSAPGLAERLQREGARLAGLLERRRALALR 341

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + T A L +A  +  +    K++  +LD++DLI  T  +L     + W+ +K+D+ ++H+
Sbjct: 342  ERTRALLVIAAQVAGNIAREKRERGLLDYDDLIDKTLAML-DSGAAGWVHFKLDRGVDHV 400

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            LIDE QDTS  QW+++  L ++F  G+       RT+FAVGDEKQSI+SF GA PK    
Sbjct: 401  LIDEAQDTSPKQWKIVARLIDEFTAGEGARDGVRRTIFAVGDEKQSIFSFQGAVPKEFAE 460

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             + + Q+R T AG  F  +    SFRS A IL  VD VF  P   + +  DST  + H+S
Sbjct: 461  WRDLLQRRFTGAGLTFEKVSFNYSFRSGAAILQSVDHVFRDPAIYRSIHADSTYPL-HQS 519

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                   ++ LW   V     Q     E W + FD++ + S    LA ++   I  +I  
Sbjct: 520  LADAGPSSIDLWPLEVPDDRQQ----IEGWQAPFDAVSETSPEVRLADKVRAEIGALIAR 575

Query: 360  DT-IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T     G++R +   D+L+LVR+R        + + LK    I V G DR  LT+H+AI
Sbjct: 576  GTQTGPMGRRRPLSYGDVLILVRRRGSA--FDAVIQALK-RGGIPVAGADRLKLTEHIAI 632

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             DLM L   +L  +DDL+    LKSPLF   +DD+FK+  QR  + +             
Sbjct: 633  IDLMKLADALLLPQDDLALAVALKSPLFGLDDDDLFKLAWQRKGSLSAALADHAAG---D 689

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNF 535
            SKF  V + +      AQ  +P  F+  +LG      GR + + R G E  D LDEFL  
Sbjct: 690  SKFAAVQRRLESYAARAQAETPFGFYAWLLGGDGSDSGRARILRRLGPEANDALDEFLEL 749

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             L  EQ    SLQ  ++ L +    IKR    + +EVR+MTVH AKGLE+PVVFL+DT S
Sbjct: 750  ALSFEQKRAPSLQGFVAWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTS 809

Query: 596  QVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                 + +  + +         +   +W  +     +IV      + + T++EY RLLYV
Sbjct: 810  SPADTQRLNLIRLPGGNAAPGSVAAMVWAGRKADDPHIVEQARSAMIEETEDEYRRLLYV 869

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
             MTRA+D+LI+       N  +    +WYD++     +   V +      + K      +
Sbjct: 870  AMTRAADRLIVGG-CMPGNRNEVRPHSWYDLISKGLESSGLVMQPVPPEGVIKRYCRPED 928

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---NL 770
                    +  +             +P  L  P     +   +L PS  +   +      
Sbjct: 929  VIEEIGTVSQGQELAVTH-------LPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPG 981

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
            ES  S ++   RG ++H+LLQ +  +    R      +  +NA  W  ++   L   +  
Sbjct: 982  ESDASRSRALQRGTLVHRLLQSLPEIAVADRPAAAGRFLARNASDWSEEDRAALAAQVLG 1041

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
            L+ +          S +EV + G++      +++SG+ID++ +++  + I +YKT+H  P
Sbjct: 1042 LIADARFAAVFGSGSRAEVPIVGRLQWRGGPVLVSGQIDRLVVTETEVLIVDYKTNHAPP 1101

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
            +     P +++ QL+ Y  +L   YP +++   L++    ++  +  + L+   A+++
Sbjct: 1102 RVEAEAPRSYVRQLARYRAVLGAIYPQRTVRAALLWTEAAEIMELSASALDAEQADLT 1159


>gi|319780204|ref|YP_004139680.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
 gi|317166092|gb|ADV09630.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1172

 Score =  610 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 298/965 (30%), Positives = 475/965 (49%), Gaps = 36/965 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL-QQASQT 59
            L + F     ++ E I   +WPLP F       +   +  T   ++L       +QA   
Sbjct: 225  LFDEFHFHPGQTAEGIAASVWPLPGFLPDYFAGFAHAAEATDARSVLNNILPYARQAFAE 284

Query: 60   QCIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                 R  LL+  FL              + +  + PDL E+   + +  ++  DR   +
Sbjct: 285  GDPIRRLQLLARAFLKTDGDAYDPAKAFKRALVDRLPDLAERYLSAANAIVETTDRLALF 344

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +M + T A+LT+A +L A YE  K+    LDF DLI  T +LL + D   W++YK+DQ I
Sbjct: 345  RMLEGTAAALTIADWLIARYEMLKRSRGFLDFNDLITRTVNLLARPDAGPWVQYKLDQGI 404

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKR 236
            +HIL+DE QDTS  QWEV++ L E+FF G        RT+FAVGDEKQSIYSF GA P  
Sbjct: 405  DHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQSIYSFQGAAPDS 464

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                + +   R  +A   F+ ++L  SFRST D+LT VD+VF+ P   +G+S D    +R
Sbjct: 465  FADSRLLFAGRVRDAEASFADLKLTWSFRSTDDVLTAVDRVFADPAVRRGISHDPD-PLR 523

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
            H++ R    G V++W  V     +    + + WT   D     + A  +A  +A TI+  
Sbjct: 524  HQAIRTDAPGYVEVWPSVG----ADVVDEPDDWTQAIDH--AHAPAVRVAENVAVTIAGW 577

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
            IG+  I   G+ + ++  D+LVLVRKR     +  LTR LK    I V G DR  L  H+
Sbjct: 578  IGSGEIIE-GRGKWLRPGDVLVLVRKRD--RFVHALTRALK-RRDIPVAGADRLSLPGHI 633

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            A+KDL+ALG  ++  +DDLS   +L+SP+F+  E+ +F +  QR    ++   +++ A  
Sbjct: 634  AVKDLIALGHLLIQPQDDLSLAAVLRSPIFDLPEEALFMLAAQRPAGLSLIASLRQHAGE 693

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
               +   ++  +    + A F    +F+  +L     R++ I+R G E  D+LDEFL+F 
Sbjct: 694  -SERLAKIVAQVDIWTNEAAFKPVFEFYAALLARDGVRRKMIARLGPEAGDILDEFLSFC 752

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            L  E+     L+  +S LE   P IKR      +EVR+MTVH AKGLE+PVVFLVD GS 
Sbjct: 753  LAEERTGLPGLEAFLSTLENAGPEIKREMDQTRDEVRVMTVHAAKGLEAPVVFLVDGGSA 812

Query: 597  VFSHKHIKKMHIMPSLND--DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             FS +H+ ++    S     D    +W   S+  N          ++   +EY RLLYVG
Sbjct: 813  PFSDQHLPRLMPFDSSGANWDGKGYLWRSASEVANGFSKAAASRARELADDEYRRLLYVG 872

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            MTRA D+LI+C +     ++  N  TW+ +V  +       ++              + +
Sbjct: 873  MTRAEDRLIVCGYH---GKRAPNAGTWHSIVSRALIGAPESEQRAHPAGGE----PVHRF 925

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--------- 765
                         E ++Q      +P  LF P+    + P  L+PS              
Sbjct: 926  HVTKLPPVAPSSAEQVRQADAFGPLPATLFRPLLPFEDLPRPLSPSGASALIDEGKQAVV 985

Query: 766  --GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                  L++         RGL +HKLLQ++  + E +R      Y  +    WP  E + 
Sbjct: 986  DKASPVLDADAEPGFAVQRGLALHKLLQMLPGIAEPERAGAAERYLLRTGADWPPSEREK 1045

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
             L S+T +L +P      +  S +EV++ G +    K   ISG+ID+++++   + I +Y
Sbjct: 1046 ALASVTSILADPGFGQLFAPSSRAEVAIMGSLEVKGKKRSISGKIDRLAVTPDTVSIVDY 1105

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            KT+   P  +  +P  ++ QL++Y  +L+  YP +++   L++   P++  +P + ++ A
Sbjct: 1106 KTNRPAPATLAEVPPAYVLQLALYRALLQPLYPGRTVKAALLFTEAPRLIELPASAMDDA 1165

Query: 944  FAEIS 948
             A ++
Sbjct: 1166 LARLT 1170


>gi|86747755|ref|YP_484251.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
 gi|86570783|gb|ABD05340.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
            palustris HaA2]
          Length = 1161

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 258/952 (27%), Positives = 435/952 (45%), Gaps = 22/952 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G++  +  + + +D+   P+   +      +   + G+ T   +AQ L+ A    
Sbjct: 226  LSVTLGVAAEDDCDAVERDIVDGPHLPRARW-TDGATIFDGGSKTDHDQAQRLRDALAAS 284

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +        F T++   +K+  T++I    P   E LK+       + +R     M 
Sbjct: 285  DTAQ-LEKYLELFFTKEAKLRKSFATKKIADPMPGFAEDLKREGARLEGLLERRRALLMR 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + T A L +A  +       K++  +LD++DLI  T  +L     S+W+ +K+D+ ++H+
Sbjct: 344  ERTRALLVIAFDVAERIRREKQERGLLDYDDLIDRTLQML-DSGASSWVHFKLDRGVDHV 402

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            LIDE QDTS  QW+++  L  +F  G+       RT+FAVGDEKQSI+SF GA PK    
Sbjct: 403  LIDEAQDTSPKQWDIVAHLIAEFTAGEGAREGIKRTVFAVGDEKQSIFSFQGAVPKEFAE 462

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             + + Q+R   AG  F  +    SFRS A IL  VD VF  P+  + +  D++  + H +
Sbjct: 463  RRDLLQRRFHGAGLAFEKVSFNYSFRSGATILQSVDHVFRDPDIYRSIHADTSYPL-HEA 521

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                    + LW   V         + E W + FD++ + S    LA ++   I+++I +
Sbjct: 522  LTDAGPSLIDLWPLEVPDDKQ----EIEGWRAPFDAVSETSPEVRLADKVRAEIASLIAS 577

Query: 360  DTIF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T+      +R ++  D+LVLVR+R        + + LK    I V G DR  LT+H+AI
Sbjct: 578  GTMTGPRDDRRRLRYGDVLVLVRRRGSA--FDAVIQALK-RGGIPVAGADRLKLTEHIAI 634

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             DLM L   +L  +DDL+    LKSPLF F +DD+F++  +R  +        +    G 
Sbjct: 635  IDLMNLADALLLPQDDLALAVALKSPLFGFDDDDLFRLAWRRKGSLR---AALRDKAAGD 691

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            +K   V+  +      +Q  +P  F+  +LG   GR + + R G E  D LDEFL   L 
Sbjct: 692  AKLTAVLHRLDTCAEQSQAETPFGFYAWLLGGDGGRARILRRLGPEANDALDEFLELALS 751

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+    SLQ  ++ L      IKR    + +EVR+MTVH AKGLE+ VVFLVDT S   
Sbjct: 752  FERKQPPSLQGFVAWLRAADTEIKRDMEISRDEVRVMTVHGAKGLEALVVFLVDTTSSPA 811

Query: 599  SHKHIKKMHIMPSLN--DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              + +  + +         P   +W  +       V      +   T++EY RLLYV MT
Sbjct: 812  DSQRLNLIRLPGGNAQPGAPSAMVWAGRKADDPRAVEQARAAMISDTEDEYRRLLYVAMT 871

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA+D+LI+       N       +WYD++     N     +              Y    
Sbjct: 872  RAADRLIVGG-CMPGNRNDVRALSWYDLISKGLENSGLAMRAVPP---PDGAVKRYCRPE 927

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                 T    E      +       +    ++   N     +    D +     ES    
Sbjct: 928  DEVVETAAPDETPAAAPLILPNWLHRSAPALRAPDNLLRPSDAHDADHRRLRRGESEAQR 987

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
             +   RG ++H+LLQ +  LP   R +    Y  +NAK W  ++   L   + +++    
Sbjct: 988  QRALQRGTLVHRLLQSLPDLPADARASAAARYLARNAKDWNDEDRDALAARVLQVITATR 1047

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                 +  S +EV ++G++    + +++SG+ID++ ++   + I +YKT+   P+ +   
Sbjct: 1048 FAVVFAPGSRAEVPIAGRLQRHGEPVLVSGQIDRLVVTDAEVLIVDYKTNQVPPRSLAET 1107

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
            P  ++ QL++Y  +L   YP + +   L++   P++  I  + L+   A ++
Sbjct: 1108 PPAYLRQLALYRAVLARLYPQRPVRAALLWTEAPEIMEISASALDAEQAALT 1159


>gi|110635907|ref|YP_676115.1| DNA helicase/exodeoxyribonuclease V, subunit A [Mesorhizobium sp.
            BNC1]
 gi|110286891|gb|ABG64950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Chelativorans sp.
            BNC1]
          Length = 1177

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 310/954 (32%), Positives = 475/954 (49%), Gaps = 39/954 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK-KAQTLQQASQT 59
            L+  FG    ES E I    WP+P F     +++V  ++ET    +L        QA   
Sbjct: 226  LRAEFGFEETESAEAIANAAWPVPGFDAQAFSEFVEAALETDASRVLNGIVPAASQAFGE 285

Query: 60   QCIEERFSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                 R  LL   F T+K            +  + P + ++   + +   +  DR   ++
Sbjct: 286  SDPVIRLDLLKKAFFTEKGEAYSERTFKAALKARLPGIYDRYLAAAEFLRQACDRLALFR 345

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M  +T A+L +A  L A YE  K+    LDF DLI+ T  LL ++DV  W++YK+D+ I+
Sbjct: 346  MLTATTAALGIADALIARYERLKRARGFLDFNDLIMRTVRLLARQDVGPWVQYKLDRGID 405

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRV 237
            HILIDE QDTS  QW ++RSL E+FF GK +     RT+FAVGDEKQSIYSF GAEP+  
Sbjct: 406  HILIDEAQDTSPEQWRIVRSLAEEFFAGKGSRDGVERTIFAVGDEKQSIYSFQGAEPEAF 465

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                   Q +   AG +F  + L  SFRST D+L  VD VFS  E  +GL+ D    I H
Sbjct: 466  AESGFRFQAQVPAAGGRFERVRLTRSFRSTEDVLRAVDLVFSREEARKGLTRDPE-PIEH 524

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            ++ R    G V++W  +      +   + + WT   D       A+ LA  IA  + + +
Sbjct: 525  KAIRDSAPGYVEIWSPLSP----EVVEEPDDWTKAVDHASA--PAAKLAEVIAGKVESWL 578

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                +   G+ R ++  DI+VLVRKR     +  L+R LKN   ISV G DR  LT H+A
Sbjct: 579  KNGEMIE-GQGRRLRPGDIMVLVRKRD--RFVHALSRSLKNRR-ISVAGADRLRLTAHIA 634

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            +KDL ALGRF+L   DDLS   +LKSPLF+  ED +F++   R E+ ++++ +++ A+  
Sbjct: 635  VKDLTALGRFLLQPNDDLSLAAVLKSPLFDLDEDALFRLAWPRAESVSLFQALREKASA- 693

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL----GAKKGRQQFISRFGNEVIDVLDEFL 533
              K Q ++  +      A F    +F+  +L    G +  R +F++R G+E  DVLDEFL
Sbjct: 694  DGKLQDILDTLRNWQRDAAFRPVFEFYASVLAGTAGREGARSRFVARLGHEANDVLDEFL 753

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            +F L  E+     L+ L+  LE   P IKR    + +E+RIMTVH AKGLE+PVVFLVD 
Sbjct: 754  SFCLTAERTGLIGLEALLDTLEGAAPEIKREMDQSRDEIRIMTVHAAKGLEAPVVFLVDP 813

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            GS   S+ H+  +             +W       N +       +++  +EEY RLLYV
Sbjct: 814  GSAPVSNSHMPCLMPFRMKELPVKGFLWRQGKDLANTVARGFEAKVREKAEEEYRRLLYV 873

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            GMTRA D+LI+C +            TW+++V  +F +         T  +   E  A  
Sbjct: 874  GMTRAEDRLIVCGYHGVRG---PAPSTWHNLVRQAFADQPG------TTELQDPEICAPV 924

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-----------TI 762
                      + REE+    ++   IP +L  P+      P  L+PS             
Sbjct: 925  LRFSVTPPVEMPREESRASKVETFDIPAELTRPLPPAPAIPRPLSPSGAAVLIEGGYEAA 984

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
              K    L+          RG  +H+LLQ +  L   KR+     Y  +    WP +E +
Sbjct: 985  ALKRSPVLDGAADPGFALERGTAVHRLLQALPELAPDKREIAARRYLARAGASWPPREAE 1044

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
            ++  S+  +L +       +  S +EVSV G+I        +SG++D+++++   + + +
Sbjct: 1045 SVCRSVLAVLRDEQFAPIFAPGSRAEVSVMGEILLGGTPQAVSGKVDRLAVTAGEVLLVD 1104

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            YKT+   P+    +P  +IAQL++Y ++LK  YP +S+   L++   P++  + 
Sbjct: 1105 YKTNRPAPEHFAEVPAAYIAQLALYAELLKPLYPGRSISAALLFTEAPRLIPVS 1158


>gi|13474239|ref|NP_105807.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099]
 gi|14024991|dbj|BAB51593.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099]
          Length = 1170

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 289/965 (29%), Positives = 464/965 (48%), Gaps = 36/965 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL-QQASQT 59
            L + F     ++ E I   +WPLP F       +   +  T   ++L       +QA   
Sbjct: 223  LFDEFHFRPGQTAEGIAASVWPLPGFLPDYFAGFAQAAESTDARSVLNNILPYARQAFAE 282

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNI--ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                 R  LL+  FL     P  +     + +  + PDL E+   +    I+  DR   +
Sbjct: 283  SDPIRRLQLLARAFLKTDGDPYDSAKAFKKALTDRLPDLAERYVSAASAIIETVDRLALF 342

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +M + T A+LT+A +L A Y+  K+    LDF DLI  T +LL + D   W++YK+DQ I
Sbjct: 343  RMLEGTRAALTIADWLIARYDVLKRSRGFLDFNDLITRTVNLLARPDAGPWVQYKLDQGI 402

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKR 236
            +HIL+DE QDTS  QWEV++ L E+FF G        RT+FAVGDEKQSIYSF GA P  
Sbjct: 403  DHILLDEAQDTSPDQWEVVKRLAEEFFAGFGARDRVHRTVFAVGDEKQSIYSFQGAAPDS 462

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                + +   R  +A   F+ ++L  SFRST D+L  VD+VF+ P   +G+S D    + 
Sbjct: 463  FADSRLLFAGRVRDAEASFADLKLTWSFRSTDDVLAAVDRVFADPVVRRGISHDPD-PLS 521

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
            H++ R    G V++W  +     +    + + W    D     + A  +A  +A TI+  
Sbjct: 522  HKAIRTDAPGYVEVWPSI----GADVVDEPDDWAQAIDH--AHAPAVRVAENVAATIAGW 575

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
            IG   I   G+ + ++  D+LVLVRKR                  I V G DR  L  H+
Sbjct: 576  IGKGEIIE-GRGKRLRPGDVLVLVRKRDS---FVHALTRALKRRDIPVAGADRLSLPGHI 631

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            A+KDL+ALG  +L  +DDLS   +L+SP+F+  E+ +F +  QR    ++   +++ A  
Sbjct: 632  AVKDLIALGHLLLQPQDDLSLAAVLRSPIFDLPEEALFTLAAQRPPGLSLAASLRQHAGE 691

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
               +   ++  +      A F    + +  +L     R++ I+R G E  D+LDEFL+F 
Sbjct: 692  -SERLAKIVAQLDAWADEAAFKPVFELYAGLLARDDVRKRMIARLGPEAGDILDEFLSFC 750

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            L  E+     L+  +S LE   P IKR      +EVR+MTVH AKGLE+PVVFLVD GS 
Sbjct: 751  LAEERTGLPGLEAFLSTLENAGPEIKREMDQTRDEVRVMTVHAAKGLEAPVVFLVDGGSA 810

Query: 597  VFSHKHIKKMHIMPSLN--DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             FS +H+ ++          D    +W   S   N          ++   +EY RLLYVG
Sbjct: 811  PFSDQHLPRLMSFGGSGRNFDGKGYLWRSASDVANGFSKAAATRARELADDEYRRLLYVG 870

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            MTRA D+LI+C +     ++  N  TW+ +V  +      +++              + +
Sbjct: 871  MTRAEDRLIVCGYH---GKRAPNTGTWHSIVSRALTGAPEIEQRPHPAGGE----PVHRF 923

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--------- 765
                     +  +E  +Q      +P  LF P+    + P  L+PS              
Sbjct: 924  HVTRLPPVAVSADEQARQADAFGPLPATLFRPLPPFEDLPRPLSPSGASALIDEGKEAVV 983

Query: 766  --GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                  L++         RGL +HKLLQV+  + E +R+     Y  +    WP  E + 
Sbjct: 984  DKASPVLDADAEPGFAVLRGLALHKLLQVLPGIAEGERQGAAERYLARTGAAWPPSEREK 1043

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
             L S+  +L +P +    +  S +EV++ G +    K   ISG+ID+++++   + I +Y
Sbjct: 1044 ALASVIAILVDPRLGQLFALSSRAEVAIMGSLQVRGKTRSISGKIDRLAVTANTVSIVDY 1103

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            KT+   P  +  +P  ++ QL++Y  +L+  YP + +   L++   P++  +P + ++ A
Sbjct: 1104 KTNRPAPVSLAEVPPAYLLQLALYRALLQPLYPGREVKAALLFTEAPRLIELPAHVMDDA 1163

Query: 944  FAEIS 948
             A ++
Sbjct: 1164 LARLT 1168


>gi|39933154|ref|NP_945430.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009]
 gi|39652779|emb|CAE25518.1| Possible exonuclease V and helicase activity based on COG assignment
            [Rhodopseudomonas palustris CGA009]
          Length = 1161

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 262/958 (27%), Positives = 446/958 (46%), Gaps = 32/958 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G++  +S +   +D+   P    S+    V+ + E G+     + + L+ A    
Sbjct: 224  LSATLGVAPGDSCDAADRDIVDGPNLPRSEW-AAVAATFEGGSANDQAQGRRLRAALALT 282

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +        F T+    +K++IT+++    P L E+L++       + +R     + 
Sbjct: 283  DAAQ-IEAYLQVFFTKDNGLRKSLITKKLGDGVPGLAERLQREGARLAGLLERRRALALR 341

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + T A L +A  +  +    K++  +LD++DLI  T  +L     + W+ +K+D+ ++H+
Sbjct: 342  ERTRALLVIAAQVAGNIAREKRERGLLDYDDLIDKTLAML-DSGAAGWVHFKLDRGVDHV 400

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            LIDE QDTS  QW+++  L ++F  G+       RT+FAVGDEKQSI+SF GA PK    
Sbjct: 401  LIDEAQDTSPKQWKIVARLIDEFTAGEGARDGVRRTIFAVGDEKQSIFSFQGAVPKEFAE 460

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            ++   Q+R   A ++F  +    SFRS A IL  VD VF  P   + +  DST  + H+S
Sbjct: 461  QRNELQRRFHGADKRFEKVAFNYSFRSGAAILQSVDHVFRDPAIYRSIHADSTYPL-HQS 519

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                   ++ LW   V     Q     E W + FD++ + S    LA ++   I  +I  
Sbjct: 520  LADAGPSSIDLWPLEVPDDRQQ----IEGWQAPFDAVSETSPEVRLADKVRAEIGALIAR 575

Query: 360  DT-IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T     G++R +   D+L+LVR+R        + + LK    I V G DR  LT+H+AI
Sbjct: 576  GTQTGPMGRRRPLSYGDVLILVRRRGSA--FDAVIQALK-RGGIPVAGADRLKLTEHIAI 632

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             DLM L   +L  +DDL+   +LKSPLF   +DD+FK+  QR  +           +   
Sbjct: 633  IDLMNLADALLLPQDDLALAVVLKSPLFGLDDDDLFKLAWQRKGSLRAALADHAAGDPRS 692

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNF 535
            +  QH    +      AQ  +P  F+  +LG      GR + + R G E  D LDEFL  
Sbjct: 693  AAVQH---RLETYAARAQAETPFGFYAWLLGGDGADSGRARILRRLGPEANDALDEFLEL 749

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             L  EQ    SLQ  ++ L +    IKR    + +EVR+MTVH AKGLE+PVVFL+DT S
Sbjct: 750  ALSFEQKRAPSLQGFMAWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAPVVFLIDTTS 809

Query: 596  QVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                 + +  + +         +   +W  +     +IV      + + T++EY RLLYV
Sbjct: 810  SPADTQRLNLIRLPGGNAAPGSVAAMVWAGRKADDPHIVEQARSAMIEETEDEYRRLLYV 869

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
             MTRA+D+LI+       N  +    +WYD++     +   V +    + + K      +
Sbjct: 870  AMTRAADRLIVGG-CMPGNRNEVRPHSWYDLISRGLESSGLVMQPVPPDGVIKRYCRPED 928

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---NL 770
                     P               +P  L  P     +   +L PS  +   +      
Sbjct: 929  VIDETGAAVPSHEAVAT-------PLPDWLRRPAPGLPSAEQVLRPSDAEDDDRRRLRPG 981

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
            ES  S ++   RG ++H+LLQ +  +    R      +  +NA  W  ++   L   +  
Sbjct: 982  ESDASRSRALQRGTLVHRLLQSLPEIAAADRPAAAGRFLARNASDWSEEDRAALAAQVLG 1041

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
            L+ +          S +EV + G++      +++SG+ID++ +++  + I +YKT+H  P
Sbjct: 1042 LIADARFAAVFGPGSRAEVPIVGRLQWRGGPVLVSGQIDRLVVTETEVLIVDYKTNHAPP 1101

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
            +     P +++ QL+ Y  +L   YP +++   L++    ++  +  + L+   A+++
Sbjct: 1102 RVEAEAPRSYVRQLARYRAVLGAIYPQRTVRAALLWTEAAEIMELSASALDAEQADLT 1159


>gi|49474856|ref|YP_032897.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1]
 gi|49237661|emb|CAF26843.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1]
          Length = 1160

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 293/969 (30%), Positives = 489/969 (50%), Gaps = 47/969 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   F L+ +++ E + + +       +  +          GN ++ +      Q  +  
Sbjct: 218  LHALFQLAPDDTNEQLLEKIQQTARLPLYALTH----CQTYGNKSLKEMIAKFSQLEEAC 273

Query: 61   CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
              E    ++S+ +   K  P+    +  ++ ++  P +++ ++  Q +   + +++   K
Sbjct: 274  DEENIIDIISNIYFKMKGEPRNFSRLSCKKSDEIWPFIQQTIEDKQSKLSLLLEKYQCSK 333

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +     A+  L       Y   KK N  LDF DLI  T  LLK++  S W+ YK+D  ++
Sbjct: 334  IATLNKAAFQLCARYLKIYANLKKANGFLDFNDLIERTLHLLKRQGASQWVHYKLDNGLD 393

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDT+  QW++I+ L ++FF G +  ++ RTLFAVGDEKQSIYSF GA P+   
Sbjct: 394  HILLDEAQDTNPEQWQIIQLLAQEFFTGHSQRTNIRTLFAVGDEKQSIYSFQGAAPENFA 453

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
               R+ QK+     QKF  I+L  SFRST D+L  VD VF  PEN +GLS ++T T+ H 
Sbjct: 454  ENGRMIQKKVQQVNQKFEKIQLNYSFRSTPDVLKSVDLVFEKPENYKGLSAENTKTV-HE 512

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R    G V LW+ +      + +   ++W    D L  ++  + LA +IA TI+N + 
Sbjct: 513  AIRAHSPGEVILWDAISK----EKSEFPDAWHLSVDHL--DTPETRLAEKIAETIANWLH 566

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
               +      R+++A DI+VLVRKR     ++ L+R LK    I + G DR  LT H+++
Sbjct: 567  NGEMLPAKG-RLMRASDIMVLVRKRDH--FVSALSRALKLR-NIPIAGADRLQLTKHMSV 622

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMAL RF+L  +DDLS  C+LKSPLF+ SE++++++   R  +      +        
Sbjct: 623  RDLMALARFVLQPKDDLSLACVLKSPLFSLSEEELYQLAAHRTGSLWQSLCMHASHVSSH 682

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            + F+   + ++    +       +F++ IL   KGRQ+ ++R G+E  DVLD F+++TL 
Sbjct: 683  ASFRDAFENLNHYRTLVDKIPVFEFYSYILNNDKGRQKILARLGSEANDVLDAFMDYTLT 742

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++     LQ  +  L    P IKR    NH EVRIMTVH AKGLE+ VVFLVD GS ++
Sbjct: 743  LQKTGLPGLQAFLETLSANDPEIKREFDQNHEEVRIMTVHAAKGLEASVVFLVDPGSAIW 802

Query: 599  SHKHIKKMHIMPSLN---DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              +H   +   PS +    D    IW P  K    +    + +LK+  +EEY RLLYVGM
Sbjct: 803  HSQHAPHLLKTPSSHPQWSDQQAFIWRPNEKFDTKLSQQALSYLKERAEEEYRRLLYVGM 862

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA D+L +C +S     +K++  TW  +V ++                  ++  A+ + 
Sbjct: 863  TRAEDRLFVCGYSG----EKTSPHTWLQLVKNALKPH------AFVIDGPAEDIAAWRYC 912

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN------ 769
                   P+++E    +      +P      +  +   P  L PS      + +      
Sbjct: 913  ITASSYAPIKQEVPCAEYQTLPSLPTFFSHKVPEEPALPKPLRPSVASLSIEADTEISSN 972

Query: 770  ----------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       E+ ++   +   G I+H+LLQ +   P  KR+++   Y    A  W   
Sbjct: 973  LKYLSLSPVLGETNINRAFSIEYGNIVHRLLQHLPNCPAQKRRDYAQYYLNTKASHWQET 1032

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
            + +  L  + ++L++  +    S  S +EVS+ G +    K+  ISG+ID++ I++ +I 
Sbjct: 1033 QKEKALCHVWQILDHSSLKPLFSDHSRAEVSLMGIVKIRGKEQAISGQIDRLYITENSII 1092

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
              ++KT    P++   I   ++ Q+++Y K+L+  +P+K +  LL+Y  E KVF +P  K
Sbjct: 1093 FADFKTGA-PPEDEAAIAPHYLLQMALYRKLLQAIHPDKDIQALLVYSKEVKVFKLPPKK 1151

Query: 940  LNKAFAEIS 948
            L+    EI+
Sbjct: 1152 LDALLDEIA 1160


>gi|222147062|ref|YP_002548019.1| ATP-dependant DNA helicase [Agrobacterium vitis S4]
 gi|221734052|gb|ACM35015.1| ATP-dependant DNA helicase [Agrobacterium vitis S4]
          Length = 1182

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 348/955 (36%), Positives = 540/955 (56%), Gaps = 14/955 (1%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+N  GL  +E+   + +  WPLP      ++ Y+ L++  G   +   A TL++A +  
Sbjct: 232  LRNALGLQPDETEISLAEAYWPLPTLAGPQLSTYIDLALTKGGSLVQGVALTLERAVRQP 291

Query: 61   CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                R  LL   F T    P+  +++I   +NK +P L + +  ++D  +  R+R   ++
Sbjct: 292  DALIRAQLLEEAFYTGSDKPKADRSLIAAAMNKAAPHLSDAIFAARDHVVACRERLRLFR 351

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +FK+T A+LTLA+ L+  YEE KK++  LDFEDLI  T +LL +  V  W+ YK+DQ I+
Sbjct: 352  LFKATRAALTLAERLDHDYEELKKRSSQLDFEDLIARTAELLTRSTVGPWVHYKLDQGID 411

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS +QW VIRSL EDFF G++     RT FAVGDEKQSIYSF GA+P+R  
Sbjct: 412  HILVDEAQDTSPVQWSVIRSLREDFFSGQSARPVRRTFFAVGDEKQSIYSFQGAKPERFS 471

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            +E R  ++      + FS + LPLSFRST  +L+ VD+VFS+ ENA+GLS  +   + H 
Sbjct: 472  QEARETEQEVARGSESFSAVRLPLSFRSTNAVLSAVDQVFSVTENARGLSAVAE-PVVHM 530

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            SSRIG  G V++WE +      + +  +E WT+ FD+ P+ + +++LARRIA  I  M+ 
Sbjct: 531  SSRIGHPGAVEVWEMIAP----EGSESEEDWTAPFDATPENAPSAMLARRIAQRIEIMLA 586

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +TI   G +R I+A DIL+LVRKR     +  LTR LK    I V G DR  LT H+A+
Sbjct: 587  RETIVEKGVERSIEAGDILILVRKR--GAFVNALTRALKRRSNIPVAGADRLRLTGHIAV 644

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ALGRF+L   DDLS   +LKSPLFN SEDD+F++  +R E  +V+  I + A  G 
Sbjct: 645  QDLLALGRFVLFTADDLSLAALLKSPLFNLSEDDVFEVAARRGE-ISVFAEIARLAEAGS 703

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             K+Q  +  +H  + +A+   PHDF+  +LG   GR+ F++R G+EV D++DEFL FTL 
Sbjct: 704  EKWQAALARLHRYVALARDLLPHDFYGRVLGPLGGRRDFLARLGSEVSDIIDEFLTFTLS 763

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +EQ     LQ  I+ LEQ  P +KR      +EVRIMTVH +KGLE+P+VFLVD GS+ F
Sbjct: 764  HEQAGLPGLQSFITTLEQEAPEVKREQDKERSEVRIMTVHASKGLEAPIVFLVDDGSKAF 823

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +H H+ K  ++ +       P+W+P     N + ++ +   K++ +EEY RLLYVGMTRA
Sbjct: 824  NHTHLPKFRMIETGAQPQECPVWVPVKAVDNPLTAEDVAKRKQAIEEEYRRLLYVGMTRA 883

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS--- 715
            +D+L++C +     + +   +  +  +        +              W         
Sbjct: 884  ADRLVVCGYRGKQVQTEIWHQMVWSALELDTERCRQQGFGGPEGDWTGLLWENAVVPGRF 943

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                +       ET+ + +     P        +       +N    D   ++ L S   
Sbjct: 944  ERQEKRQEKRELETLPEALLRPAPPPPRLPRPLSPSGAGIEVNDEDGDMLLRSPLFSKGE 1003

Query: 776  DNQ-TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
            D      +G ++H++LQ++  LP  +RK     Y  + A+ WPA E   L+ S+  +L++
Sbjct: 1004 DAGLALQKGRLVHRMLQMLPGLPADERKPAARRYGERAARFWPAHERDRLVESVLAILDH 1063

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
            P ++   S  + +E S+ G I    +   +S R+D+++++ + + + +YKT+   P++  
Sbjct: 1064 PALSEVFSSHAQTEFSLMGTIRLGAEQRAVSARVDRMAVTNEKVILLDYKTNRQPPRQES 1123

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
             +P +H AQL+IY ++LK  YP + + CLL+Y   P V  + +  L+ A  E+ T
Sbjct: 1124 EVPLSHSAQLAIYRELLKPLYPGRVIECLLVYTEGPHVVALTEAGLHGALQELQT 1178


>gi|254502806|ref|ZP_05114957.1| double-strand break repair helicase AddA [Labrenzia alexandrii
            DFL-11]
 gi|222438877|gb|EEE45556.1| double-strand break repair helicase AddA [Labrenzia alexandrii
            DFL-11]
          Length = 1180

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 297/968 (30%), Positives = 468/968 (48%), Gaps = 41/968 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L +   +   +      +       F ++    Y   ++ TG  T   KA+ L  A +  
Sbjct: 234  LADDLEIDPAQQLSDFDRRFRSECPFDLNTCLSYSE-ALNTGTKTDQGKAEALVAAIRQT 292

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                        FLT K   +K++ T+++ +  PD+ + L   Q   +++ D       +
Sbjct: 293  DPGLFREAWLPVFLTGKLEARKSLATKKVTEAFPDMVDALIAEQARLLELLDERRKVVTY 352

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              T+A L LA  +  +YE AK     LDFEDL++ T  LL K D + W++YK+DQ ++HI
Sbjct: 353  AGTVALLRLADAVITYYERAKTAKGYLDFEDLVVKTATLLAKSDAAQWVQYKLDQGLDHI 412

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QDTS  QWEV+ +L  +FFVG +     RTLFAVGDEKQSIYSF GA P    + 
Sbjct: 413  LVDEAQDTSPRQWEVVNALAAEFFVGDSGREKVRTLFAVGDEKQSIYSFQGAVPAYFDQM 472

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +R   ++A +A Q+F  + L LSFRST D+L  VD+VF      QGLS+D    + H + 
Sbjct: 473  RRAFSRQAQSAEQEFHSVNLQLSFRSTPDVLGAVDEVFKDASAYQGLSQDGVAPV-HEAI 531

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            R+   G V LW             + + W    D +   S    +A+RIA TI   +   
Sbjct: 532  RLD-PGIVDLWPL----ETEAEVSEPDDWRLPVDHVGSGSPMLKVAKRIASTIKGWMLDG 586

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            T          +  D+++LVRKR               +  I   G+DR ILTDH+A++D
Sbjct: 587  T---------AEPGDVMILVRKRG---PFVEALNRELKNLNIPAAGSDRLILTDHIAVQD 634

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS- 479
            L ALGRF+L  EDDLS   +LKSPLF   + D+ ++  +  E        Q       + 
Sbjct: 635  LAALGRFLLLPEDDLSLAAVLKSPLFGLDDMDLLEVARETDEKIRPGTLWQMLVKRSEAS 694

Query: 480  -KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             K+Q V + + +    A F  P++F+  +LGA  GRQ F  R G EV DVLDEFL  T+ 
Sbjct: 695  TKWQEVRRQLEDWRARADFVPPYEFYARLLGADGGRQAFRRRLGVEVDDVLDEFLALTIA 754

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             EQ     L+  ++ +   P  IKR  +     VRIMTVH +KGLE+ +V LVD G    
Sbjct: 755  YEQAGTPGLEGFLAWMAAAPTEIKRELTNTKGMVRIMTVHGSKGLEARIVILVDPGGAPV 814

Query: 599  SHKHIKKMHIMPSLNDD--PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            S  H       P    D  P   +W+P    R +   + ++ L+K  +EEY RLLYV +T
Sbjct: 815  SAIHDPSFLPRPRPGHDLSPPSLVWLPPKTDRISWHDEAVETLRKGQEEEYRRLLYVALT 874

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+LI+C       ++ ++   WY +V  +    +  +       +    W     + 
Sbjct: 875  RAEDRLIVCGW---EPKRGAHDNCWYSLVSAALKP-QAKELHDADGDVVGWRWQKDPSAG 930

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----DTKGKTNLE 771
                 +P           D+  +P     P+K  ++    L PS       D  G   + 
Sbjct: 931  TGRAPSPGHPRTDASVSGDDHTLPDWAHQPVKP-VSRKIRLQPSKAFEDMEDKDGIEPVP 989

Query: 772  S-------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
            +          D+    RG ++H+LL+++  LP   R     ++  +  K   A     L
Sbjct: 990  AVARLAAGRQPDSWPLERGRLVHRLLELLPDLPAASRMAAAEAFLDQALKPVFAPFKDTL 1049

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKI-NCPKKDIIISGRIDQISISQQNIFIFEY 883
            L  + ++LE P      S +S +EV+++G I +    D+ +SG+ID++ +    + I +Y
Sbjct: 1050 LKELAQVLEKPEFQPVFSENSRAEVALTGTIRSANGTDVEVSGQIDRLIVDGNEVVIVDY 1109

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            KT+   P+ ++ +P  + AQLS+Y+++L+  YP K++ C L++ + P +  IP   L++ 
Sbjct: 1110 KTNLQPPETLDQVPLEYRAQLSVYKELLRQIYPAKAVRCHLLWTTGPSLMEIPGELLDET 1169

Query: 944  FAEISTKI 951
            F  ++ ++
Sbjct: 1170 FTGLAPEV 1177


>gi|319407899|emb|CBI81553.1| ATP-dependent nuclease subunit A [Bartonella schoenbuchensis R1]
          Length = 1151

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 303/966 (31%), Positives = 496/966 (51%), Gaps = 50/966 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+  F L  NE++  I K++             + + S    N           Q +   
Sbjct: 218  LRAFFNLKPNETHSQILKEIQQTASLSPYTFKYFQTYS----NKKATDIIAKFSQLATVS 273

Query: 61   CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
              E+   ++SS + T    P+    + ++++++ S  +++++++ Q++   + D++   K
Sbjct: 274  DEEDIIDVVSSIYFTADGIPRNFSCLFSKKLDETSSFIQKEIEEKQNKVSTLLDKYQGIK 333

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +    +A+  +       Y + KK N +LDF+DLI  T  LL+++  S W++YK+D+ I+
Sbjct: 334  LVTLNIAAFQICATYLKIYADLKKANGLLDFDDLIERTLYLLQRKGASQWVQYKLDRGID 393

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HILIDE QDT+  QW++I+ L ++FF   + H++ RT+FAVGDEKQSIYSF GAEP+   
Sbjct: 394  HILIDEAQDTNPEQWQIIQLLAQEFFADYSQHTNIRTIFAVGDEKQSIYSFQGAEPENFA 453

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            +  R+ QK+     QKF  I+L  SFRSTADIL  VD VF  PEN +GLS D+  T+ H 
Sbjct: 454  KNGRMFQKQVQRINQKFEKIQLHYSFRSTADILKGVDLVFETPENYKGLSADNVKTV-HE 512

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
              RI   G + LW+ +      + N   + W    D L  ++    LA +IA TI+N + 
Sbjct: 513  PVRINSPGEIILWDTISK----ETNKLPDDWHLTVDHL--DTPEIRLANKIAATIANWLH 566

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +  +      R+++A DILVLVRKR D   +  L+R LK  + + V G DR  LT H+++
Sbjct: 567  SGEMLPAKG-RLLRASDILVLVRKRHD-QFVPALSRALKL-HNVPVAGADRLQLTSHISV 623

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMAL +F+L  +DDLS  C+LKSPLF  SED ++ +      T ++++ +   A+  +
Sbjct: 624  RDLMALAQFVLQPQDDLSLACVLKSPLFALSEDALYHL--AAKRTGSLWQSLCTHASSHV 681

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
              ++   + + +           +F++ IL   KGRQ+ ++R G+E  ++LD F+++TL 
Sbjct: 682  -SYKDAFENLSKYRTFVDKMPVFEFYSHILNNDKGRQKILARLGSEANEILDAFMDYTLT 740

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++     LQ  +  L    P IKR    NH EVRIMTVH AKGLES VVF VD GS ++
Sbjct: 741  IQKTGLPGLQAFLETLSANKPEIKRELDQNHEEVRIMTVHAAKGLESAVVFFVDPGSAIW 800

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              ++       P   +     IW P ++         + +LK+  +EEY RLLYVGMTRA
Sbjct: 801  DTRYTPHFFTFP--LNGRQALIWRPNAQFDTK-FKKALSYLKERAEEEYKRLLYVGMTRA 857

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             D+LI+C +S        N  TW  +V  +        K    +        A    +  
Sbjct: 858  EDRLIVCGYSGQQ----ENPNTWLKLVKKALQPHTVAIKDPTEDV-------AAWRYSIT 906

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            P +T + +E   +       +P      +  +   P  L PS        + ES  +   
Sbjct: 907  PSSTLINKEILDEGNQTLPPLPDFFHHKMPLEPALPKPLRPSVASLFIDVDAESFPNQTH 966

Query: 779  ----------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                            T   G ++H+LLQ +   P  +R ++   Y    A  WP  + +
Sbjct: 967  LSISPVLGEKNTNKIFTIEYGNLVHRLLQYLPECPPQQRFDYAQRYLNIKASHWPEIQRE 1026

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
              L  + +LLENP + +  S +S +EVS++G +    K+ IISG+ID++ ++Q ++   +
Sbjct: 1027 KALQQVCKLLENPHLKSLFSDNSRAEVSLTGTLKIHGKEQIISGQIDRLCVTQDSVLFAD 1086

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            +KT    P++   I   ++ Q+++Y K+L+  YP+K++   LIY  E K+F +   KL+ 
Sbjct: 1087 FKTG-IPPEDETTIAPNYLLQMALYRKLLQTIYPDKNIDAFLIYCKEAKIFTLTPEKLDA 1145

Query: 943  AFAEIS 948
               E +
Sbjct: 1146 CLNEFT 1151


>gi|115522488|ref|YP_779399.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gi|115516435|gb|ABJ04419.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
            palustris BisA53]
          Length = 1165

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 266/961 (27%), Positives = 447/961 (46%), Gaps = 32/961 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G++  +    I  D+   P+   +          E G     K+AQ L++A    
Sbjct: 226  LSAALGVAPKDDAASIDSDIVDGPHLPRAQWEAAAE-VFEAGGANDAKQAQRLREALDLS 284

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +      S F T     +K++ T++I +  P L   L +  +    +  R       
Sbjct: 285  GHAQ-IERYLSVFCTGDGGARKSLATKKIAEADPALCAVLAREAERIGALLQRRRAVAAR 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              T A L +A  +       K++  +LD++DLI  T  +L +   + W+ YK+D+ ++H+
Sbjct: 344  DRTQALLLIATSVADAIRREKQERGLLDYDDLIDKTLAMLDR-ISAGWVHYKLDRGVDHV 402

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            LIDE QDTS  QW+++  L  +F  G+    +  RT+FAVGDEKQSI+SF GA P+    
Sbjct: 403  LIDEAQDTSPKQWDIVERLIAEFTAGEGARENIKRTIFAVGDEKQSIFSFQGAVPREFAE 462

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +   + R   A   F  +    SFRS A IL  VD VF   +  + +  D+T  + H+S
Sbjct: 463  RRETLRSRFQKADLSFEKVSFNYSFRSGAAILQSVDHVFRDEDIYRSIHADTTYPV-HQS 521

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                    + LWE              E W + FD++   S    LA+R+   I+ +I  
Sbjct: 522  LTDAGPSLIDLWELQQPDERQD----LEGWQAPFDAVSATSPEVKLAQRVQAEIAALISG 577

Query: 360  DTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T+    G +R ++  D+L+LVR+R        + + LK    I V G DR  LT+H+AI
Sbjct: 578  GTLTGPVGSRRRLRYGDVLILVRRRGSA--FDAVIQALK-RGNIPVAGADRLKLTEHIAI 634

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             DLM L   +L  +DDL+    LKSPLF   +DD+FK+  +R  +       Q   N   
Sbjct: 635  IDLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLAWERQGSLRQALADQAATN--- 691

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             KF    + +++   +A   SP  F+  +LG  +GR + + R G+E  D LDEFL   L 
Sbjct: 692  DKFGIAQQRLNDCAKLALSQSPFSFYAWLLGGDRGRARMLRRLGHEATDALDEFLELALA 751

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E+ + ++LQ  ++ L      IKR      +EVR+MTVH AKGLE+PVVFL+DT S   
Sbjct: 752  YERKAPATLQGFVAWLRAADTEIKRDMEIARDEVRVMTVHGAKGLEAPVVFLIDTTSSP- 810

Query: 599  SHKHIKKMHIMPSLNDDPGIP---IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +      +  +P  N  PG P   +W  +       V++    +   T++EY RLLYV M
Sbjct: 811  ADTQRLNLIRLPQGNAGPGTPSVMVWAGKKADDPPAVANARAAMIGDTEDEYRRLLYVAM 870

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA+D+LI+       N  +  + +WYD++       ER        +        +  +
Sbjct: 871  TRAADRLIVGG-CQPGNRNEVREASWYDLI---CKGLERSGLPMQEIAGPDGAVKRFCRA 926

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---NLES 772
                  T +     + + +   ++P  L  P          L PS+ +          E 
Sbjct: 927  EDAWPETAIAATAALPEPI--AELPFWLSLPAPPLTPTERTLQPSSAEIDAARTARRGEP 984

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN--AKLWPAKEYKNLLLSITR 830
              +  +   RG+++H+LLQ +  +   +R++    +  +N   K+WP  +   L   +  
Sbjct: 985  TDARERARQRGVLVHRLLQSLPEIAPTRRRDAAAGFLGRNTDPKIWPEADRTALADRVLA 1044

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHV 889
            L+ +P   +  +  S +EV + G++  P     ++SG+ID++ +S + + I ++KT+   
Sbjct: 1045 LIADPRFASVFAEGSRAEVPIIGRLRQPGGVPFLVSGQIDRLVVSDEAVLIVDFKTNQTP 1104

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
            P     +P T++ QL++Y  +L   +P+K +   L++   P++  I    L++    I +
Sbjct: 1105 PGNESEVPVTYLRQLALYRAVLARLHPSKPVRAALLWTEAPEMMEISSVALDRELVAIMS 1164

Query: 950  K 950
             
Sbjct: 1165 A 1165


>gi|121601832|ref|YP_989604.1| double-strand break repair helicase AddA [Bartonella bacilliformis
            KC583]
 gi|120614009|gb|ABM44610.1| double-strand break repair helicase AddA [Bartonella bacilliformis
            KC583]
          Length = 1155

 Score =  593 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 308/968 (31%), Positives = 506/968 (52%), Gaps = 51/968 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+  F L+++E+++ + + +              +      GN           Q   T 
Sbjct: 218  LRQLFNLAVDETHQRLLEKIKQTALLSP----HAMKYYQTNGNSKAKNIIADFLQLVSTS 273

Query: 61   CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
              E   +L+S+ +LT    P+    + + + ++  P ++++++K Q++   + +++   +
Sbjct: 274  DEENIITLVSNIYLTTTGKPRDFSRLFSNKSDEIWPFVQKEIEKKQNQLSTLLEKYQCVQ 333

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +    +A   L       Y + KK N +LDF+DLI  T  LL++R  S W++YK+D  I+
Sbjct: 334  LVTLNMAVFQLCSLYLKIYADLKKANGLLDFDDLIERTLHLLQRRGASQWVQYKLDHGID 393

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDT+  QW++I+ L ++FF G +  ++ RT+FAVGDEKQSIYSF GAEP+   
Sbjct: 394  HILLDEAQDTNPAQWQIIQLLAKEFFTGDSQRTNTRTIFAVGDEKQSIYSFQGAEPENFA 453

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            +  R+ QK+  +  +KF  I+L  SFRSTAD+L  VD VF  PEN +GLS D+  T+ H 
Sbjct: 454  KNGRMIQKQIQHVNEKFEKIQLHYSFRSTADVLKSVDLVFETPENYKGLSADNAKTV-HE 512

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
              R+   G V +W+ +      Q +   + W S  D L  ++    LA +IA TI++ + 
Sbjct: 513  PIRVNSPGDVIVWDVISK----QTSTLPDDWHSTVDHL--DTPEVRLADKIATTIADWLQ 566

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
               +      R+++A DI++LVRKR     +  L+R LK    I V G DR  LT H+++
Sbjct: 567  KGEMLPAKG-RLLRASDIMILVRKRDQ--FVPALSRALKLR-NIPVAGADRLQLTSHISV 622

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMAL RF+L  +DDLS  C+LKSPLF  SE+ ++++      T ++++ +   A+   
Sbjct: 623  QDLMALARFVLHPKDDLSLACVLKSPLFALSEEALYQL--AAQRTGSLWQSLNAHASSHD 680

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
              F+ + + + +   +       +F++ IL   KGRQ+ ++R G E  +VLD F+++TL 
Sbjct: 681  Y-FKEIFENLSKYRALVDQIPVFEFYSHILNNDKGRQKILARLGPESNEVLDAFMDYTLT 739

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++     LQ  +  L +  P IKR    NH EVRIMTVH AKGLE+ VVFLVD+GS ++
Sbjct: 740  IQKTGLPGLQAFLETLSKNEPEIKRELDQNHEEVRIMTVHAAKGLEASVVFLVDSGSAIW 799

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +  +      +P   +     IW P ++ +       + HLK+S +EEY RLLYVGMTRA
Sbjct: 800  NSHYAPHFFKLP--LNGKQAFIWRPNAEFKTKPFEKALSHLKESAEEEYRRLLYVGMTRA 857

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             D+LIIC +    ++K+    TW  +V ++      +K   +      D+  A+ +S   
Sbjct: 858  EDRLIICGY----SQKREVPNTWLHLVKNA------LKPYAVPTKGPADDIAAWRYSITP 907

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
              + P++++   +   +   +P      I  +   P IL PS  +    T+ E  L   Q
Sbjct: 908  STSFPIDQKILGEASQEFPPLPAFFHHKIPAESALPKILKPSVTNFATDTDSEIELFSAQ 967

Query: 779  ------------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
                              +   G +IHKLLQ +   P  KR+++   Y    A  W   +
Sbjct: 968  KILNVSPILEAKNTNKAFSIEYGNLIHKLLQYLPDCPPEKRQDYAQQYLNIKASHWDDTK 1027

Query: 821  YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI 880
              N L  I  +L+NP +    S  S +EVS+ G +    K+ +ISGRID++ I+Q  I  
Sbjct: 1028 KNNALHDIWAILDNPHLKLLFSDSSRAEVSLMGIVKIRGKEQMISGRIDRLCITQDCILF 1087

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
             ++KT    P++   I   + +Q+++Y K+L+  YP K++   LIY    K+F +   KL
Sbjct: 1088 ADFKTG-TPPEDETAITQNYWSQMALYRKMLQTIYPEKTIQAFLIYSQGAKIFTLLPKKL 1146

Query: 941  NKAFAEIS 948
            +    EI+
Sbjct: 1147 DTLLDEIA 1154


>gi|114705059|ref|ZP_01437967.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506]
 gi|114539844|gb|EAU42964.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506]
          Length = 1211

 Score =  593 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 297/981 (30%), Positives = 482/981 (49%), Gaps = 38/981 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L +  G+  N     I   L P+P    S       L+  +   T  + A++L   +   
Sbjct: 230  LADALGIDPNTDEAAIISVLGPIPGLDPSTCEIVRHLAERSDKKTDQRLAESLPDLAAAA 289

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               ER +LL    +TQ    + ++ T+ +  + PDL E++ ++Q+      DR    K+F
Sbjct: 290  DPLERLALLKQIVMTQAGGRRASVATKVVTGELPDLDERVAEAQEYVETAEDRLAALKLF 349

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +++ A+L +A  L   Y   K++   LDF DLI  T DLL + + ++W+ YK+DQ I+HI
Sbjct: 350  RASRAALVIADALERDYALLKRRRGRLDFTDLIARTADLLTRSEAASWVHYKLDQGIDHI 409

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            LIDE QDTS  QW+V+R L ++FFVG++TH+  RT+FAVGDEKQSIYSF GA P     E
Sbjct: 410  LIDEAQDTSPRQWQVMRQLVDEFFVGRSTHNRTRTVFAVGDEKQSIYSFQGASPHMFDLE 469

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +R+ + +A  AG KF+ + L  SFR+   +L  VD+VF  PEN +GLS        H S+
Sbjct: 470  RRVVKAKADEAGLKFTPVSLNQSFRTLETVLGAVDQVFEAPENRRGLSTGGERPT-HTSA 528

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            R    G V++W  +     ++   + ++W    D  P+ S A  LA+RIA  I+  +  D
Sbjct: 529  RQDGEGLVEIWPTIR----AESTVEPDNWLDPMDEEPKSSPAYRLAQRIADQIAEWL-GD 583

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             I   G+ R +   D+++LVRKR +             +  ISV G DR  +T+H+A++D
Sbjct: 584  PIVEKGRIRPLDPGDVMILVRKRTN---FIPAMAAALRERGISVAGADRLTITEHIAVQD 640

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-------------- 466
            L+ALGR   + EDDLS   +LKSPLF F++D++  +   R   E +              
Sbjct: 641  LIALGRVAANFEDDLSLAALLKSPLFEFTDDELMALALSRGPLEHLSAGLRKLGGEEGPG 700

Query: 467  ----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                +    + A   + K  H I+ + EL +   F S   F+  ILG + GR + ++R G
Sbjct: 701  RVPDWFPDGEPAARLLEKAHHAIERLDELRNRTGFESVFTFYARILGPEGGRSKLMARLG 760

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
             +  DV+D FL+  L  +    S L   +S+LE  PP IKR       EVRIMT H +KG
Sbjct: 761  RDTADVIDAFLDLALSEDTAGVSGLDAFLSDLEAAPPEIKREMEGGRGEVRIMTTHASKG 820

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPS----LNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            LE+PVVFLVD GS  F   H  ++         L D     +W    +  N+ ++ L + 
Sbjct: 821  LEAPVVFLVDPGSAPFHGSHGSRLMRWEEMPRLLADQAPGFLWRAAKEVENSAIAALREI 880

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             K+  +EEY RLLYVGMTRA+++L+IC  + T    +   R   +        +      
Sbjct: 881  EKQRAEEEYRRLLYVGMTRAAERLVICGMAGTRGPSEEAWREKVESALKPHAEEITDMAG 940

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                       +    +          R   + +L +E   P+ L         E   L 
Sbjct: 941  DPVCWRIGSRRMGKPETERPDAANLAVRALDLSRLEEEVAPPRPLTPSSAGAAFEADELE 1000

Query: 759  PSTIDTK-------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
             S ++ +           L +  + +    RGL++H+LLQ + TL   +R+    +Y  +
Sbjct: 1001 SSVLEEQNTAETAYASPVLGTAATPSLGIQRGLVVHRLLQHLPTLASEERERAAEAYVRR 1060

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
                      K LL S+ RL+++P      +  S +EV+++G +   + +  ++G ID++
Sbjct: 1061 ALPQVGDTHRKQLLASVQRLMDDPAYAAIFAEGSRAEVAIAGTVRIGRTNYAVNGTIDRL 1120

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
             ++ +++ I +YKT+   PQ +  +P  ++ QL+IY  ++   YP++ +   L++   P 
Sbjct: 1121 VVTDRDVLIVDYKTNRPPPQTLAEVPKDYVRQLAIYRALVMQLYPHRPVRTALLFTEGPH 1180

Query: 932  VFIIPQNKLNKAFAEISTKIP 952
               + +  +  A   +    P
Sbjct: 1181 FIALDEAMMEGALGNMENGSP 1201


>gi|23016111|ref|ZP_00055871.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
            (contains helicase and exonuclease domains)
            [Magnetospirillum magnetotacticum MS-1]
          Length = 1154

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 266/951 (27%), Positives = 451/951 (47%), Gaps = 27/951 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-T 59
            L+ R GL   +S   +        +F    +   V   +  G+ +  K+A  + +     
Sbjct: 225  LRARLGLEAGDSPVSLLAWAVDEAHFDAPALRAAVEAML-GGSDSDAKRAADMARFLAEP 283

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
            +   + F    + F+T K T +K + T+ + K  P  +  L    +  +++ ++    ++
Sbjct: 284  ERRADLFEEWCAVFITDKGTIRKTLATKAVYKALPTAEPVLAAEAERLLRLTEKLKAARI 343

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             ++T A LTL   L   Y  AK    ++D++DLI+   DLL +  V+ W+ YK+D  I+H
Sbjct: 344  LEATQALLTLGGALLQSYRRAKSIRALMDYDDLILGARDLLAQPGVAPWVLYKLDGGIDH 403

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+  QW V+  LTE+FF G+    S RT+FAVGD KQSIYSF  A+P+   R
Sbjct: 404  VLIDEAQDTNPDQWAVVEKLTEEFFAGRGARESLRTVFAVGDAKQSIYSFQRADPREFER 463

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             ++        AG K+ +++L LSFRS   +L  V+ VF+  +  +         I H  
Sbjct: 464  MRQAFAAHVPAAGGKWDVVDLNLSFRSAPSVLDAVNAVFAPGQPGRDGVAGDED-ITHLP 522

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             R GQ G V++W  V  +   +      +W    + +  +S  + LAR +A  I  MI  
Sbjct: 523  HRGGQAGRVEVWPAVEPRPTDEPP----AWKPPVERIRGDSPRTRLARLVASRIRAMIDG 578

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            + + S    R ++A D+LVLVR+R     +  L R LK+   + V G DR +LT+ +A+ 
Sbjct: 579  EMLESKA--RPVRAGDVLVLVRRRGG--FVEDLVRELKSRK-VEVAGADRMVLTEQMAVM 633

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            DLMALG F+L  EDDL+   +LK PL   +E+ +F +   R E   ++E +++       
Sbjct: 634  DLMALGNFLLLPEDDLTLATVLKGPLVGLTEEQLFTLAHHRGEDVGLWEALRRGVAHEGG 693

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
             F+   + + +L+  A   SPH  +  +LG   GR+  ++R G E  D +DEF++ TL  
Sbjct: 694  VFEMAFRQLSQLLAQADHVSPHTLYARVLGPLGGRRNLLARLGLEAEDAIDEFMSLTLAF 753

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E+    SLQ  +  LE     IKR       + VRIMTVH +KGL++P+VFL DT     
Sbjct: 754  ERAHPPSLQGFLHWLEAGALEIKRDLEQGGRDAVRIMTVHGSKGLQAPIVFLPDTMQVP- 812

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                 +   ++     +  +P W P+++  + +     +  K S + EY RLLYV MTRA
Sbjct: 813  ----TRSPRLLWLGEGEEELPAWPPRAEDMDAVCRRGAEARKLSREREYRRLLYVAMTRA 868

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             D+LI+C        K + +  W+ +V  +                 +          + 
Sbjct: 869  EDRLILCGWRGL---KAAPETCWHALVQGALAATAAEFDDPFLVQAGETAEAPVLVLANA 925

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                                +P       + +   P  L PS  +    T    L   + 
Sbjct: 926  QTAPAETGSAAGPGERPAAALPDWASLSAEPEPVPPRPLAPSRPEGDEPTVRSPLAEADG 985

Query: 779  --TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
               + RG +IH+LLQ +  LP  +R   +  +  + A      E   +   ++ +L++P 
Sbjct: 986  KPRWQRGKLIHRLLQTVPELPGPERSRAMLRFLGRPAWGLETAEQLAIANEVSDILDHPG 1045

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            +       S +EV + G+I     D ++SGR+D++ +S+  + + +YKT+   P   + +
Sbjct: 1046 LAGLFGPGSKAEVPLVGRI----GDRVVSGRVDRLVVSESEVVVADYKTNRRPPATPDEV 1101

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
            P  ++ Q++ Y   L   YP+  + C+L++   P++  I   +L+ A A +
Sbjct: 1102 PDLYVRQMAAYRLALACIYPHHRIRCVLVWTDGPRLTEITSARLDDALAGL 1152


>gi|240849707|ref|YP_002971095.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup]
 gi|240266830|gb|ACS50418.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup]
          Length = 1158

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 294/969 (30%), Positives = 486/969 (50%), Gaps = 50/969 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+  F L+ +E+ + + + +       +  +N   +     G+ +     + L Q  +  
Sbjct: 218  LRALFNLAPDETNQCLLEQIKQTARLPLYALNHCET----NGSQSCKDMVEKLSQLEKVH 273

Query: 61   CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                  +++S  + T K  P+K  ++  ++ ++  P +++ L+  Q++   + +++   K
Sbjct: 274  DETNILNIISDIYFTIKGEPRKFSHLSRKKSDQIWPFIQQMLEDKQNKLSILLEKYQCAK 333

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +    +A+  L       Y   KK N  LDF+DLI  T  LL+++  S W+ YK+D+ ++
Sbjct: 334  VATLNMAAFQLCAVYLKIYTNLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDRGLD 393

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDT+  QW++I+ L ++FF G +  ++ RTLFAVGDEKQSIYSF GA P+   
Sbjct: 394  HILLDEAQDTNPEQWQIIQLLAQEFFSGYSQRTNIRTLFAVGDEKQSIYSFQGAAPENFA 453

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
               RI QK+     Q+F  I+L  SFRSTAD+L  VD VF  PEN +GLS ++T T+ H 
Sbjct: 454  ENGRIIQKKVQQTNQQFEKIQLHYSFRSTADVLKSVDIVFETPENYKGLSAENTKTV-HE 512

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R+   G V +W+ +      + +     W    D L  ++    LA +IA TI+N + 
Sbjct: 513  AIRVHSPGEVVIWDAIS----QETSEFPHDWHLSVDHL--DTPEVRLAEKIAETIANWLQ 566

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
               +      R+I+A DI++LVRKR                  I V G DR  LT H++I
Sbjct: 567  KGEMLPAKG-RLIRASDIMILVRKRDQ---FVSALSRAFKHRNIPVAGADRLQLTKHISI 622

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMAL RF+L  +DDLS  C+LKSPLF  SE++++++   R  T ++++ +   A    
Sbjct: 623  RDLMALARFVLQPQDDLSLACVLKSPLFALSEEELYQLAAHR--TGSLWQSLFTHA-SSQ 679

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            + F+   + ++    +       +F+  IL   KGRQ+ +SR G+E  DVLD F+++TL 
Sbjct: 680  ASFKDAFEKLNHYRALVDKIPVFEFYNHILNNDKGRQKILSRLGSEANDVLDAFMDYTLT 739

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++     LQ  +  L    P IKR    N+ E+RIMTVH AKGLE+ +VFLVD GS ++
Sbjct: 740  IQKTGLPGLQAFLETLSASEPEIKREFEQNNEEIRIMTVHAAKGLEAAIVFLVDPGSAIW 799

Query: 599  SHKHIKKMHIMP---SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              +H   +  +P   +  +     IW P  K    +    I HLK+  +EEY RLLYVGM
Sbjct: 800  HPQHAPHLLKVPLNNAKWNGKQAFIWRPNEKFDTKLSKQAISHLKERAEEEYRRLLYVGM 859

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA D+L IC +     +      TW  +V  +        K  +      ++  A+ + 
Sbjct: 860  TRAEDRLFICGYKGQKTQ----SHTWLQLVKKALEPHALAIKDSV------EDIAAWRFC 909

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
               P +  +  +    +      +P      +  +   P  L PS      + + E   S
Sbjct: 910  ITPPSSVSINPKVPCAECQTLPPLPAFFSHKVPEEPVLPKPLKPSVASLSIEADTELSSS 969

Query: 776  DNQ----------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
              Q                +   G I+H+LLQ +   P  KR+++  +Y    A  W   
Sbjct: 970  PKQLTISPVLGATNTNRAFSIEYGNIVHRLLQYLPDYPLQKRRDYARNYLNIKASHWYES 1029

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
            + ++ L  + ++L++  +    S  S +EVS+ G +    K+  ISG+ID++ I+Q +I 
Sbjct: 1030 QREDALRHVWKILDHVYLKPLFSEHSRAEVSLMGIVKIRGKEHAISGQIDRLYITQNSII 1089

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
              ++KT    P+    I   H  Q+++Y K+L+  +P+K +  LLIY  E K+F +   K
Sbjct: 1090 FADFKTG-TPPENEAAIASHHWLQMALYRKLLQAIHPDKDIQALLIYSKEAKIFKLSPEK 1148

Query: 940  LNKAFAEIS 948
            L     E++
Sbjct: 1149 LEAFLGEVA 1157


>gi|27375863|ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110]
 gi|27349001|dbj|BAC46017.1| bll0752 [Bradyrhizobium japonicum USDA 110]
          Length = 1180

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 254/949 (26%), Positives = 447/949 (47%), Gaps = 30/949 (3%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
             G+   +  E +  ++   P+   S  +  ++ ++E G+ +   +A  L++A +      
Sbjct: 242  LGVDAADRIEDVETEILDGPFLPRSRWD-DIAFALEDGSKSDNDQASRLREA-KAFSGGA 299

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
            +       FLT +  P+K ++T++    +P +    +        + ++     M   T 
Sbjct: 300  QVDAYLGVFLTDEKLPRKAVLTKKFCDHNPSVARLFENEAQRLAGLIEKRRAVTMRDRTA 359

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            A L +A    A+Y   K++  +LD++DLI  T  +L +   S W+ YK+D+ ++H+LIDE
Sbjct: 360  ALLHIATAAAANYRREKQERGLLDYDDLIDKTLAMLNR-VSSGWVHYKLDRGVDHVLIDE 418

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
             QDTS  QW+++  +  +F  G+       RT+FAVGDEKQSI+SF GA+P+     +R 
Sbjct: 419  AQDTSPRQWDIVAHIISEFTAGEGAREGLNRTIFAVGDEKQSIFSFQGAQPREFDARRRE 478

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              ++ T AG KF  +    SFRS A IL  VD VF  P   + +         H +    
Sbjct: 479  LHRKFTAAGLKFDPVAFTYSFRSGAAILHSVDHVFRDPAIYKSIHSVEIGHPLHNALADA 538

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                ++LW+   +          E W + FD +   S    LARRI   I  ++ + T+ 
Sbjct: 539  GPSVIELWDLAEADDRQD----IEGWRAPFDGVAVTSPEVKLARRIQAEIKRLVESGTLT 594

Query: 364  -SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               G++R ++  D+L+LVR+R +      + + LK    + V G DR  LT+H+ I DLM
Sbjct: 595  GHEGERRPLRYGDMLILVRRRGNA--FDAVIQALK-HAGVPVAGADRLKLTEHIGIIDLM 651

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L   +L  +DDL+    LKSPLF   +DD+F +   R    ++   + + A  G  KF 
Sbjct: 652  NLADALLLPQDDLALAVALKSPLFGLDDDDLFALAWGRK--GSLRRALGEQA-AGSEKFA 708

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             V++ +      A+  +P  F+  +LG   GR + + R G+E  D LDEFL   L  E+ 
Sbjct: 709  AVLRRLEACETRAREETPFAFYAWLLGGDGGRARILRRLGHEANDALDEFLELALNYERK 768

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            + +SLQ  ++ L      +KR    + +EVR+MTVH AKGLE+ VVF+VDT S     + 
Sbjct: 769  APASLQGFMAWLRSADTEVKRDMEISRDEVRVMTVHGAKGLEASVVFMVDTTSSPADSQR 828

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
            ++ + +     +   + +W  +       V++  K + + T++EY RLLYV MTRA+D+L
Sbjct: 829  VRLIQV--PRGNGGEVVVWAGRKADDPKPVAEARKAMLEETEDEYRRLLYVAMTRAADRL 886

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            I+       N +   + +WYD+V                      E    + +       
Sbjct: 887  IVGG-CMPGNMRTVRKLSWYDLVDTGLTGSGL--------EKQTLETPLGKVTRFARPED 937

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS---TIDTKGKTNLESLLSDNQT 779
             +        +     +P  L +P   ++ +   + PS       +   + ES+ S    
Sbjct: 938  VVALGTPATFVDQTIALPDWLRTPAPREMQDDDSVRPSGQSAEGGRAVRSGESVQSRALA 997

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
              RG ++H+LLQ +  +   +R+     +  +NA  W   +   L   +  L+  P    
Sbjct: 998  LQRGTLVHRLLQSLPDIAAERRREAARGFMARNASDWAEADRTALADKVLALIAEPRFAP 1057

Query: 840  AMSCDSYSEVSVSGKINCPK-KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
              +  S +EV++ G++  P  +  ++SG+ID++ +    + I ++KT+   P+     P 
Sbjct: 1058 VFAAGSRAEVAIVGRLERPGLQPALVSGQIDRLVVRPDEVLIVDFKTNQAAPKSATEAPA 1117

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
             ++ QL++Y  +L   YP K +  +L++    +   I    L+ A A +
Sbjct: 1118 VYVRQLALYRAVLARLYPQKPVRAVLLWTEALEYMEISAPALDAALASL 1166


>gi|90421911|ref|YP_530281.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90103925|gb|ABD85962.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas
            palustris BisB18]
          Length = 1164

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 284/957 (29%), Positives = 462/957 (48%), Gaps = 25/957 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G++ ++S   + +++   P    +   K  S+ +E G+ T   +A+ L+QA+   
Sbjct: 226  LSAALGVAPDDSCAAVDQEIVDGPNLPRARWEKAASI-LEGGSKTDGDQAERLRQAATL- 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               ++ +     FLT+ FTP+K + T++I    PDL   +K+  +    + +R     + 
Sbjct: 284  TGNDQIARYLQIFLTKDFTPRKTLATKKITDARPDLVAAMKRECERIGPLLERRRALALR 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + T A L +A  + A Y   K+   +LD++DLI  T D+L +   S W+ YK+D+ ++H+
Sbjct: 344  ERTQALLVIASDVAADYARQKQDRGLLDYDDLIDKTLDMLNR-ISSGWVHYKLDRGVDHV 402

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            LIDE QDTS  QW+++  L  +F  G       RT+FAVGDEKQSI+SF GA P+     
Sbjct: 403  LIDEAQDTSPRQWDIVDHLIAEFTAGVGARDVKRTIFAVGDEKQSIFSFQGASPREFALR 462

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +   Q R  NA  KF  I    SFRS A IL  VD VF      + +  D+T  I H S 
Sbjct: 463  RSALQTRFRNAELKFDPISFNYSFRSGAAILQSVDHVFRDQAIYRSIHADTTYPI-HESL 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                   + LWE              E W + FD+LP+ S    L++R+   I+ +IG  
Sbjct: 522  ADAGPSLIDLWELQQPDERQD----LEGWRAPFDALPETSPEVKLSQRVQAEIAELIGNG 577

Query: 361  TIF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T+    G +R ++  D+L+LVR+R        + + LK    I V G DR  LT+H+AI 
Sbjct: 578  TLTGPKGDRRALRYGDVLILVRRR--GKAFDAIIQALK-RGGIPVAGADRLKLTEHIAII 634

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            DLM L   +L  +DDL+    LKSPLF   +DD+FK+  QR    ++ + +   A     
Sbjct: 635  DLMNLADALLLPQDDLALAVALKSPLFGLDDDDLFKLAWQRK--GSLRDALAAHAAE-DG 691

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            KF    + + +    A+  +P  F+  +LG   GR + + R G+E  D LDEFL   L  
Sbjct: 692  KFNTAHRRLQDCEKRARADTPFAFYAWLLGGDGGRARILRRLGHEATDALDEFLELALGY 751

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            E+ + +SLQ  ++ L      +KR    + +EVR+MTVH AKGLE+PVVFLVDT S    
Sbjct: 752  ERKAPASLQGFMAWLRAADTEVKRDMEISRDEVRVMTVHGAKGLEAPVVFLVDTTSSPAD 811

Query: 600  HKHIK--KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             + +    +    +    P + +W  +      +V++    +   T++EY RLLYV MTR
Sbjct: 812  TQRLNLVHLPQGNAALSGPSVAVWAGKKADDPPVVANARAAMIAETEDEYRRLLYVAMTR 871

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A+D+LI+       N  +    +WYD++           +              Y     
Sbjct: 872  AADRLIVGG-CQPGNRAEVRPLSWYDLICKGLEGSGLAMQTVPP---PDGVVKRYCRQED 927

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-TIDTKGKTNLESLLSD 776
                               Q +P  L  P         +L PS   D++     +S    
Sbjct: 928  LVPEQDQAAAPPRVAAPAPQPLPAWLNQPAAPTPLAERVLRPSDDADSRRSRAEDSSAPR 987

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL--WPAKEYKNLLLSITRLLEN 834
             Q   RG ++H+LLQ +  LP  +R      Y  +NAK   W   +   L +S+  L+++
Sbjct: 988  AQARQRGQLVHRLLQSLPELPRERRAAAAARYLARNAKDPVWTEPDRAALAVSVLALIDD 1047

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
            P +       S +EV ++G++     D +++SG+ID++ ++   + + ++KT+   P+ +
Sbjct: 1048 PRLAALFGPGSRAEVPIAGRLTRLGGDTVLVSGQIDRLLVTPSEVLLVDFKTNQAPPRAL 1107

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
              IP  ++ QL++Y  +L + YP ++L   LI+    ++  I  N L+   A I + 
Sbjct: 1108 AEIPSGYLRQLALYRAVLANLYPGRTLRAALIWSEVAEIMEISDNALDAGLAAIMSA 1164


>gi|307942842|ref|ZP_07658187.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4]
 gi|307773638|gb|EFO32854.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4]
          Length = 1174

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 290/966 (30%), Positives = 449/966 (46%), Gaps = 38/966 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G+S       +         F  +    Y   +   G+   LK A  L  A+   
Sbjct: 225  LAAELGISETSDLAALEARFLSECPFDPNTCLSYAE-AFRAGSGNDLKMADALAGAAVIT 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              E+        FLTQK  P+K +  + + +  P + + L   Q   + + +  N    F
Sbjct: 284  DPEKFKKHWLPLFLTQKMEPRKKLANKGVAEAYPAVIDALVAEQQRLLDLLEERNLIVTF 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              T A L LA  +   YE AK     LDFEDL++ T  LL + D + W++YK+DQ ++HI
Sbjct: 344  VGTRALLELAHAVIERYENAKMAKGYLDFEDLVVKTARLLARSDAALWVQYKLDQGLDHI 403

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QDTS  QW+V+ SL  +FF G++     RTLFAVGDEKQSIYSF GA P      
Sbjct: 404  LVDEAQDTSPRQWQVVSSLAAEFFSGESASDRVRTLFAVGDEKQSIYSFQGAVPAYFDAM 463

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +R   K A  A   F  ++L LSFRST D+L  VDKVF   +  QGLS++    + H + 
Sbjct: 464  RRQFSKHAEAAQHTFHSVDLQLSFRSTPDVLGAVDKVFKESDAYQGLSQELKAPV-HEAI 522

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            R    G V++W             + E W    D +   S  + +A+RI+  I + +   
Sbjct: 523  RRD-PGLVEIWPL----EQEADVVEPEDWREPIDHVGISSPPARVAQRISTAIRDWMEKG 577

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                      +   DI+VLVRKR        +         I V G+DR +LTDH+A++D
Sbjct: 578  E---------VAPGDIMVLVRKRG---AFVEILNRELKQRGIPVAGSDRLVLTDHIAVQD 625

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ---RHETETVYEYIQKFANCG 477
            L ALGRF+L  EDDLS   +LKSPLF  +++D+ +I      R    T+++ +       
Sbjct: 626  LAALGRFLLLSEDDLSLAAVLKSPLFQLTDEDLLEIARDPDGRRRAGTLWQGLVSRGMDM 685

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
              K++ V   +      A F  P +F++ +L A  GR+QF  R G EV DVLDEFLN TL
Sbjct: 686  -PKWEKVRSRLDIWRARADFMPPFEFYSRLLSADGGRRQFRKRLGVEVDDVLDEFLNLTL 744

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              EQ     L+  ++ +   P  IKR  ++    VR+MTVH +KGLE+ VV LVD GS+ 
Sbjct: 745  AYEQTGTPGLEGFLAWMAAAPTEIKRELTSTKGLVRVMTVHGSKGLEAKVVILVDPGSKP 804

Query: 598  FSHKHIKKMHIMPSLNDD-PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
             +  H        S     P   +W+P    R    +  I+   ++  EEY RLLYV +T
Sbjct: 805  VNATHDPAFLPRESGVAGAPPALVWLPTKADRTQWHNSAIEARHETQAEEYRRLLYVALT 864

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+L++C     S   ++           +   + +    + T    +      E   
Sbjct: 865  RAEDRLVVCGWEPKSGAPENGWYNLVSRALTADAREIKNTVGETTAWQWQRAANDPEVMD 924

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----DTKGKTNLE 771
                +    + ET   L      P+ L  P+K        L PS +     + +    + 
Sbjct: 925  LQETHHSDAQTETAPMLDLPPPPPQWLAKPVKPLPR-KRRLQPSKVFEVMEEKERIDPVP 983

Query: 772  -------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                    L   +    RG I+H+LL+V+  +P   R   I  +   +           L
Sbjct: 984  TSARLKSRLADPSWPLERGRIVHRLLEVLPEMPAEDRDGAIDRFLDASLPDAFKARKSEL 1043

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEY 883
               I ++L +    +  +  + +EV V+G I      +I +SG+ID++     ++ I +Y
Sbjct: 1044 SDEIQKILLSEEFASLFAETARAEVPVAGTILTTGGAEIAVSGQIDRLVECPDHVLIVDY 1103

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            KT+  VP+  E +   + AQLS+Y ++LK  +  K+++  L++ S+P + ++P + L + 
Sbjct: 1104 KTNVSVPRHPEEVSAEYRAQLSVYRELLKGVFSGKAIMAALLWTSQPALMLMPDDLLEET 1163

Query: 944  FAEIST 949
            F  +  
Sbjct: 1164 FKGLKP 1169


>gi|85714148|ref|ZP_01045137.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
 gi|85699274|gb|EAQ37142.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
          Length = 1176

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 269/957 (28%), Positives = 438/957 (45%), Gaps = 30/957 (3%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            +  G+  +E  E + +++   P    S      +L + TG+   +K+A+ L+ A      
Sbjct: 239  DALGVDPDERVEAVEREIIEGPNLPRSIWLDTAAL-IATGSSNDIKQAERLRAAHAEVGD 297

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
              R       FLT   +P+K+ +T++I+   PD+ E L       + + +R     +   
Sbjct: 298  AARADRYLDVFLTADGSPRKSFVTRKISDVRPDIAEMLADECQRVVALLERRRAINIRDR 357

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            T + L +A  + A+Y+  K +  +LD++DLI  T  +L+      W+ YK+D+ ++H+LI
Sbjct: 358  TQSLLVIAAAVAANYQRDKHERGLLDYDDLIDKTLRMLE-HTSPGWVHYKLDRGVDHVLI 416

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            DE QDTS  QW+++  +  DF  G+       RT+FAVGDEKQSI+SF GA P+     +
Sbjct: 417  DEAQDTSPKQWDIVERIIADFTTGEGAREGVKRTVFAVGDEKQSIFSFQGAAPREFDERR 476

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            R  +++  +A   F   +   SFRS   IL  VD VF  PE    +       + H S  
Sbjct: 477  RKLERKFADAKLPFCKEDFIYSFRSGKTILESVDHVFRDPEIYASIHAVGAHPV-HESLA 535

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V LW     +   +       W + FD++   S    LARRI   I  +I    
Sbjct: 536  DAAPGIVDLWSLEEREKHEEIEG----WPAPFDNVTATSPEVKLARRIRNEIKALIAQGV 591

Query: 362  IFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +  + G +R +   DILVLVR+R +      + + LK    I V G DR  LT+H+AI D
Sbjct: 592  MTGHLGNRRPLGYGDILVLVRRRGNA--FDAVIQALK-QSGIPVAGADRLKLTEHVAIID 648

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            LM+L   +L   DDL+    LKSPLF   +DD+FK+  QR  +                K
Sbjct: 649  LMSLADALLLPRDDLALAVALKSPLFGLDDDDLFKLAWQRKGSLRDALAGHA---PTDDK 705

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLIL----GAKKGRQQFISRFGNEVIDVLDEFLNFT 536
            F+   + +      A   +P  FF  +L    G++ GR++ + R G+E  D LDEFL   
Sbjct: 706  FRDAFERLKRCESRAARETPFAFFAWLLGGQGGSEGGRRRILRRLGHEANDALDEFLELA 765

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            L  E+ + +SLQ  ++ L      +KR      NEVR+MTVH AKGLE+ VVFL DT + 
Sbjct: 766  LTYERKAPASLQGFMAWLRAADTEVKRDMEITRNEVRVMTVHGAKGLEASVVFLADTSTS 825

Query: 597  VFSHKHIKKMHIMPS--LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                + +  + +          G+ IW          V+     +   T+ EY RLLYV 
Sbjct: 826  PADTERLSLIRMARGNAPAGGGGVTIWAGSKVEDPPCVALARASMTAETEHEYRRLLYVA 885

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            MTRA+D+LI+      +N K   + +WY ++     N     +        +      + 
Sbjct: 886  MTRAADRLIVGG-CKPANRKDIREFSWYHLIEKGLGNSGLAMQE------IETSNGKVKR 938

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
             T   E                  +P  L      +      L PS  D   ++      
Sbjct: 939  FTRPGEAASDAAGPAGPAAAAGITLPSWLHRMAAPEAPATRSLQPSDTDEAARSPAGEPA 998

Query: 775  SD-NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
                +   RG + H+LLQ +   P  +R++   SY  +NA  W A E   L+  +  +L+
Sbjct: 999  DQHRRARLRGTLAHRLLQSLPEAPRERRRDAALSYLARNANDWSAAERDALVTRVMAVLD 1058

Query: 834  NPMMTTAMSCDSYSEVSVSGKINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
            +       +  S +EV+++G++   + D +++SG+ID++ ++   + + +YKT    P+ 
Sbjct: 1059 DARFAPVFAEGSRAEVAIAGRLTTRRGDTLLVSGQIDRLVVTPDEVLVVDYKTSRAPPRN 1118

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
            +  +P  HI QL++Y  IL   YP   +   L++    ++  I    L+     I +
Sbjct: 1119 LADVPQAHIRQLALYRAILASLYPKLPVKAALLWTEALEMMEISAPTLDAGLDAIIS 1175


>gi|288959562|ref|YP_003449903.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510]
 gi|288911870|dbj|BAI73359.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510]
          Length = 1158

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 260/956 (27%), Positives = 445/956 (46%), Gaps = 37/956 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            + +   +    + E I              + +    ++  G+    ++   +Q      
Sbjct: 214  IHDTLTVPPGVTEESILTHACHDDQCDPPALREACR-ALSGGSAGDQERGIAIQHWLDAA 272

Query: 61   CI-EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                  F      FLT + +P+K ++T++     P     L+K  +  ++I +R     +
Sbjct: 273  DRRVRAFEAYKRLFLTAEGSPRKTLMTKKPATAYPQALTSLRKEAERLVEIAERVKAAGV 332

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK----KRDVSAWIRYKIDQ 175
              ST A LTLA+ +   Y E K    +LD++DLI+  N LL     K     W+ YK+D 
Sbjct: 333  AASTTALLTLAQAMLDAYRERKAARALLDYDDLILAANRLLGGGDGKAPRVPWVLYKLDG 392

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT---HSSPRTLFAVGDEKQSIYSFHGA 232
             ++HILIDE QDT+  QW ++ +L  +FF            RT+FAVGDEKQSI+SF  A
Sbjct: 393  GLDHILIDEAQDTNPDQWAIVAALAGEFFAELEAAATDGKIRTVFAVGDEKQSIFSFQRA 452

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P    R +R  Q++A +A + ++ ++L +SFRSTA +L  VD VF++     G++ D++
Sbjct: 453  DPAEFARMRRHFQEKAESAERLWAGVDLDISFRSTAAVLETVDAVFALDRARDGVASDAS 512

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             TIRHR+ R GQ G V+LW  V      +      +W         +S ++ LA  IA T
Sbjct: 513  PTIRHRAFRRGQAGLVELWPPVKPAEAVEAP----AWAPPVARESADSPSARLASVIAAT 568

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +   I    +      R ++  D++VLVR+R  T  +T L R LK+   + V G DR +L
Sbjct: 569  VHRWIDGGEMLEAKG-RPVRPGDVMVLVRRR--TAFVTELVRALKDR-GVPVAGVDRMVL 624

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            T+ LA+ DL+AL  F+L  +DDL+   +LK PL    E+ +F++   R    T++  +  
Sbjct: 625  TEQLAVMDLVALADFLLLPDDDLTLATVLKGPLVGLDEEALFRVAHGRR--GTLWRSLVA 682

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA------KKGRQQFISRFGNEVI 526
             A      F+   +Y+ +L+    F +P++ F  +L        + GR+  + R G +  
Sbjct: 683  LA-ESEPAFRPARRYLGDLLARTDFSAPYELFAGLLNRPCPADVRSGRRAILKRLGPDAQ 741

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D L+EFL   L  E+    SLQ  ++ L      IKR        VRIMTVH +KGL++P
Sbjct: 742  DPLEEFLAVCLAFEKTEPPSLQNFLAWLAASDAEIKRELEQGGGTVRIMTVHGSKGLQAP 801

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL DT         I         +DD  +P++  +    + + ++      +   +E
Sbjct: 802  IVFLPDTLGSPTQSPPILWP------DDDCPVPLFAARRGQEDGLCAEARARANRRRDQE 855

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            Y RLLYV +TRA D+L IC H      K+      +  + +    +  V        ++ 
Sbjct: 856  YRRLLYVALTRAEDRLYICGHQG----KREPSDDCWYRLVEEAMRETGVPHSFDFTGLSP 911

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID-TK 765
            D W    W     ++  + R    ++    +  P  +  P   +      L PS  D  +
Sbjct: 912  DGWAGEGWRLVGAQDVVVPRHVETEESAATEPPPPWIAEPAPGEPEPSRPLTPSRPDGEE 971

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                      D Q F RGL++H+LLQ +  L E  R+     +  + A     ++   + 
Sbjct: 972  PAVRSPLGADDGQRFRRGLLVHRLLQTLPNLVEEAREAACRRFLARPAHKLTPEQQDAIA 1031

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                 +L +          S +EV + G +        ++GRID+++++   ++I +YKT
Sbjct: 1032 RETLAVLSHAEFAHLFGPGSRAEVPLVGVVTLGDGSRTLAGRIDRLALAGDTVWIVDYKT 1091

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
            +   P+++E +P  +  Q++ Y + L+  YP + + C+L++   P    +P + L+
Sbjct: 1092 NRPPPRDLEDVPMVYRRQMAAYREALRAVYPGRRVRCVLLWTDGPYTMELPPSVLD 1147


>gi|163867331|ref|YP_001608525.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476]
 gi|161016972|emb|CAK00530.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476]
          Length = 1157

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 296/969 (30%), Positives = 486/969 (50%), Gaps = 51/969 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+  F L+ +E+ + + + +       +  +          G+ +     +   Q  + +
Sbjct: 218  LRALFNLAPDETNQCLMEQIQQTARLPLYALKH----CEINGSQSFKDMVEKFSQLEKAR 273

Query: 61   CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                  +++S  +   K  P+   N+  ++ ++  P +++ L+  Q++   + ++    K
Sbjct: 274  DETNILNIISDIYFKTKGEPRSFSNLSRKKSDEIWPFIQQMLEDKQNKLSLLLEKHQCAK 333

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +    +A+  L       Y   KK N  LDF+DLI  T  LL+++  S W+ YK+D+ ++
Sbjct: 334  VATLNMAAFQLCAVYLKIYTNLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDRGLD 393

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDT+  QW++I+ L ++FF G +  ++ RTLFAVGDEKQSIYSF GA P+   
Sbjct: 394  HILLDEAQDTNPEQWQIIQLLAQEFFSGYSQRTNIRTLFAVGDEKQSIYSFQGAAPENFA 453

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
               RI QK+A    Q+F  I+L  SFRSTAD+L  VD VF  PEN +GLS ++T T+ H 
Sbjct: 454  ANGRIIQKKAQQTNQQFEKIQLHYSFRSTADVLKSVDLVFETPENYKGLSAENTKTV-HE 512

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R+   G V +W+ +      + +     W    D L  ++    LA +IA TI++ + 
Sbjct: 513  AIRVHSPGEVIIWDAISK----ETSEFPHDWHLSVDHL--DTPEVRLAEKIAETIADWLQ 566

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
               I      R+I+A DI++LVRKR                  I V G DR  LT H++I
Sbjct: 567  KGEILPAKG-RLIRASDIMILVRKRD---KFVSALSRALKHLNIPVAGADRLQLTKHISI 622

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALGRF+L  +DDLS  C+LKSPLF FSE++++++   R  T ++++ +   A+  +
Sbjct: 623  RDLMALGRFVLQPQDDLSLACVLKSPLFAFSEEELYQLAAHR--TGSLWQSLCTHASSQV 680

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
              F+   + ++    +       +F++ IL   KGRQ+ +SR G+E  DVLD F+++TL 
Sbjct: 681  -SFKDAFERLNHYRTLVDKIPVFEFYSHILNNDKGRQKILSRLGSEANDVLDAFMDYTLA 739

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++     LQ  +  L    P IKR    N+ E+RIMTVH AKGLE+ +VFLVD GS ++
Sbjct: 740  IQKTGLPGLQAFLETLTASEPEIKREFEQNNEEIRIMTVHAAKGLEAAIVFLVDPGSAIW 799

Query: 599  SHKHIKKMHIMP---SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              +H   +  +P   +  +     IW P  K    +    I HLK+  +EEY RLLYVGM
Sbjct: 800  HPQHAPHLLKVPLNNAQGNGQQAFIWRPNEKFDTKLSKQAISHLKERAEEEYRRLLYVGM 859

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA D+L IC +       K+   TW  +V  +        K          E IA    
Sbjct: 860  TRAEDRLFICGYKGQ----KTPSHTWLQLVKKALEPHAVAIK-------GPAEDIAAWRY 908

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK-------- 767
                 +  + +E +  +      +P      +  +   P  L PS      +        
Sbjct: 909  CITSSSASINQEVSCAESQALPPLPAFFSHKVSVEPVLPKPLKPSVASLSIEADTELSSS 968

Query: 768  ------TNLESLLSDNQTF--NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                  + +   ++ N+ F    G +IH+LLQ +   P  KR+++  +Y    A  W   
Sbjct: 969  PKQLFTSPVLGEINTNRAFFIEYGHLIHRLLQYLPDCPPQKRQDYARNYLNIKASHWDES 1028

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
            + +  L  + ++L++  +    S  S +EV + G +    K+  ISG+ID++ I++ +I 
Sbjct: 1029 QRERALRHVWKILDHVYLKPLFSEQSRAEVPLMGIVKIRGKEQAISGQIDRLYITKNSII 1088

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
              ++KT    P+    I   H  Q+++Y K+L+  +P+K +  LLIY  E K+F +P  K
Sbjct: 1089 FADFKTG-IPPENEAAIAPHHWLQMALYRKLLQAIHPDKDIQALLIYSKEAKIFKLPPEK 1147

Query: 940  LNKAFAEIS 948
            L     EI+
Sbjct: 1148 LEACLDEIA 1156


>gi|92115690|ref|YP_575419.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91798584|gb|ABE60959.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter
            hamburgensis X14]
          Length = 1162

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 267/955 (27%), Positives = 442/955 (46%), Gaps = 28/955 (2%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            +   +   E  E + +++   P   +S+     ++ +ETGN + +++A+ L++A      
Sbjct: 227  DALDVDPAERVEDVEREIVDGPNLPISEWEALAAI-LETGNKSDIEQARRLREAHAMIGE 285

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
              +       FLT     +K+ +T++I+   PD+   L +     I + +R     +   
Sbjct: 286  AAQADRYLDVFLTGDSVLRKSFVTKKISDVRPDIAAMLDRESQRVIALLERRRALTIRDR 345

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            T + L +A  + A+Y   K++  +LD++DLI  T  +L  +    W+ YK+D+ ++H+LI
Sbjct: 346  TQSLLVIATAVAANYRREKQERGLLDYDDLIDKTLAML-DQTSPGWVHYKLDRGVDHVLI 404

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            DE QDTS  QW+++  +  DF  G+       RT+FAVGDEKQSI+SF GA P+     +
Sbjct: 405  DEAQDTSPKQWDIVERIIADFTTGEGAREGVRRTVFAVGDEKQSIFSFQGAAPREFDERR 464

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               +++  +A   F   +   SFRS   IL  VD VF        +       + H S  
Sbjct: 465  SKLERKFRDAELPFRKEDFIYSFRSGKTILESVDYVFRDAAIYTSIHAVGAHPV-HESLA 523

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V LW       +     Q E W + FD++   SS   LARRI   +  +I   T
Sbjct: 524  DAAPGVVDLWSL----EERDARQQIEGWRAPFDAVSATSSEVKLARRIRNEVKTLIAQGT 579

Query: 362  IFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +  + G +R ++  DILVLVR+R +      + + LK    I V G DR  LT+H+AI D
Sbjct: 580  MTGHLGDRRPLRYGDILVLVRRRGNA--FDAIIQALK-QSGIPVAGADRLKLTEHIAIID 636

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            LM L   +L   DDL+    LKSPLF   +DD+F I   R  +          AN    K
Sbjct: 637  LMNLADALLLPRDDLALAVALKSPLFGLDDDDLFAIAHNRKGSLRDALADHATAN---DK 693

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            F+   + +      A   SP  F+  +LG   GR++ + R G+E  D LDEFL   L  E
Sbjct: 694  FRDAFERLKMCETRAAHESPFAFYAWLLGGDGGRRRILRRLGHEANDALDEFLELALTYE 753

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            + + +S Q  ++ L      +KR    + +EVR+MTVH AKGLE+ VVFL DT +     
Sbjct: 754  RKAPASQQGFMAWLRAADTDVKRDMEISRDEVRVMTVHGAKGLEASVVFLADTVTSPADT 813

Query: 601  KHIKKMHIMPS--LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            + +  + +          G+ +W  +       V +    +   T+ EY RLLYV MTRA
Sbjct: 814  ERLNLIRMSRGNAPAHAAGVTVWAGRKAEDPPDVVNARAAMIAETEHEYRRLLYVAMTRA 873

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +D+LI+       N K   +  WYD++      D+ + K  L     +      +  T  
Sbjct: 874  ADRLIVGG-CKPGNRKDVREHAWYDLI------DKGLGKSGLAMREIETAAGTVKRFTRP 926

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---NLESLLS 775
             E  P               +P  L S    +      L PS  D          ES   
Sbjct: 927  GETEPDAAGPATPVAAAPIALPPWLHSMAAPEAPAGPSLRPSDADDNAHHRIWPGESPDQ 986

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
              +   RG ++H+LLQ +  +P  +R +   +Y  +NA+ W   E   L   +  L+ + 
Sbjct: 987  RRRALLRGTLVHRLLQSLPDVPVDRRGDTALAYLGRNARDWSEAERDALAAQVLALIGDS 1046

Query: 836  MMTTAMSCDSYSEVSVSGKINCP-KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
                  +  S +EV+++G++       +++SG+ID++ ++++ + I ++KT+H  P+   
Sbjct: 1047 QFAPVFTDGSRAEVAIAGRLTTRRGDPVLVSGQIDRLVVTREAVLIVDFKTNHAPPRNPA 1106

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
              P  ++ QL++Y  +L   YP   +   L++   P++  I    L+     I +
Sbjct: 1107 DAPPAYVRQLALYRAVLARLYPELPVKAALLWTETPEMMEISALALDAGLEAIIS 1161


>gi|49473710|ref|YP_031752.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse]
 gi|49239213|emb|CAF25532.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse]
          Length = 1157

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 297/969 (30%), Positives = 492/969 (50%), Gaps = 50/969 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+  F L+ +E+ + + + +       +  +          GN  +        Q ++T 
Sbjct: 218  LRALFHLAPDETNQRLLEKIQQTARLPLYILTH----CKTHGNQHLKDMIAKFSQLAETC 273

Query: 61   CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                   ++S+ +      P+    +   + ++  P +++ +K+ Q +   + +++   K
Sbjct: 274  DETNIIKIISNIYFRMTGEPRNFSRLSCTKSDETWPFIQQMIKEKQSKLSVLLEKYQCLK 333

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +    + +  L       Y   KK N  LDF+DLI  T  LL+++  S W+ YK+D  ++
Sbjct: 334  IATLNMVAFRLCTLYLKIYANLKKANGFLDFDDLIERTLHLLQRKGASQWVHYKLDSGLD 393

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDT+  QW++I+ L ++FF G +  ++ RTLFAVGDEKQSIYSF GA P+   
Sbjct: 394  HILLDEAQDTNPEQWKIIQLLAQEFFTGHSQCTNIRTLFAVGDEKQSIYSFQGAAPENFA 453

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
               RI QK+     QKF  I+L  SFRSTAD+L  VD VF  PEN +GLS ++T T+ H 
Sbjct: 454  ANGRIIQKKVQQVNQKFEKIQLNYSFRSTADVLKSVDLVFETPENYKGLSAENTKTV-HE 512

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R+   G V LW+ +      + N   + W    D L  ++    LA +IA T++N + 
Sbjct: 513  AIRVHSPGDVILWDAISK----ETNEFPDDWHVTVDHL--DTPEVRLAEKIAETVANWLH 566

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             + +      R+++A DI++LVRKR     +  L+R LK  + I V G DR  LT+H+++
Sbjct: 567  NEEMLPAKG-RLMRASDIMILVRKRDQ--FVLALSRALKL-HNIPVAGADRLQLTNHISV 622

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMAL RF+L  +DDLS  C+LKSPLF  +ED+++++   R  T ++++ +   A    
Sbjct: 623  RDLMALARFVLQPQDDLSLACVLKSPLFALTEDELYQLAAHR--TGSLWQSLCMHALSH- 679

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            + F+   + ++    +       +F++ IL   KGRQ+ ++R G+E  DVLD F+++TL 
Sbjct: 680  ASFKDAFENLNHYRTLVDKIPVFEFYSYILNIDKGRQKILARLGSEANDVLDAFMDYTLT 739

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++     LQ  +  L +  P IKR    NH EVRIMTVH AKGLE+ VVFLVD G+ ++
Sbjct: 740  IQKTGLPGLQAFLETLSESEPEIKREFHQNHEEVRIMTVHAAKGLEAAVVFLVDPGTPIW 799

Query: 599  SHKHIKKMHIMPSLND---DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              +H   +  +P  N    +    IW P ++    +    +  LK+  +EEY RLLYVGM
Sbjct: 800  HPQHASHLLKVPFFNTQLSEQQNFIWHPNAQFNTKLSEKALSRLKERAEEEYKRLLYVGM 859

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA D+L IC +S     K++  RTW  +V  +        K         ++  A+ + 
Sbjct: 860  TRAEDRLFICGYSG----KRTFPRTWLQLVKKALTPHAIPIK------GPAEDIAAWRYC 909

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL-- 773
                 + P+ +E +  +      +P   F  +  +   P  L PS      + + E    
Sbjct: 910  ITPSSSIPINQEVSCAESQTFPPLPDFFFHKVPAEPALPKPLRPSVASLSIEADTEFAPN 969

Query: 774  --------------LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                           +   +   G +IH LLQ +      KR+++   Y    A  W   
Sbjct: 970  LKQFSISPVLGKTKTNRAFSIEYGNLIHLLLQYLPDCIPQKRRDYAQHYLNTKASHWNES 1029

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
            + K+ L  I ++L++  +    S  + +EVS+ G I    K+  ISG++D++ I+Q  I 
Sbjct: 1030 QKKDALRHIWQILDHSYLKPLFSEGARAEVSLMGIIKIRGKEQAISGQVDRLYITQNKII 1089

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
              ++KT    P+    I    + Q+++Y K+L+  +P K++  LLIY  E K+F +P  K
Sbjct: 1090 FADFKTG-IPPENEAAIAPRDLLQMALYRKLLQAIHPTKNVQALLIYTKEAKIFKLPSEK 1148

Query: 940  LNKAFAEIS 948
            L+    EI+
Sbjct: 1149 LDALLDEIA 1157


>gi|163757508|ref|ZP_02164597.1| probable nuclease/helicase protein, ATP dependent [Hoeflea
            phototrophica DFL-43]
 gi|162285010|gb|EDQ35292.1| probable nuclease/helicase protein, ATP dependent [Hoeflea
            phototrophica DFL-43]
          Length = 1196

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 304/968 (31%), Positives = 470/968 (48%), Gaps = 27/968 (2%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQT 59
            ++   GL+ +E    I    WP+    +  +      +               L  A   
Sbjct: 230  IRTALGLAEDEDETAIIAQAWPMEALPIDYVKDVFEFAGSAKSASKAYDFTYGLVAAHSQ 289

Query: 60   QCIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                ER  LL   F T+   P K  ++ ++ + ++ PDL ++ + +Q +   + DR    
Sbjct: 290  TDPAERLDLLRQVFFTKSGPPSKLGSVASKSVAERFPDLADRAQAAQAQIAGVFDRLARL 349

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            K   ++L +  LA+     +   K +  +LD++DLI  T  LL+K   SAW+ YK+DQ I
Sbjct: 350  KALDASLIAYHLARRYIGGFAAMKSRQALLDYDDLIAATASLLEKSGASAWVHYKLDQGI 409

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            +HIL+DE QDT+ +QW VI  L+E+FF G+    + RTLFAVGDEKQSIYSF GA P+R 
Sbjct: 410  DHILVDEAQDTAPLQWSVIGKLSEEFFAGEGARQARRTLFAVGDEKQSIYSFQGARPERF 469

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
             +E+R  Q +A  AG  F  + L +SFRS++++L +VD VF+  +  +G+  D    + H
Sbjct: 470  AQERRSTQLKAEAAGVVFEHVPLRVSFRSSSEVLKLVDHVFASADAMRGM-GDPDEPVMH 528

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             ++R    G  +LW  +  Q     +     WT+ FD +P+ + ++ LARRIA  + + I
Sbjct: 529  ETARARAPGQAELWPMIAKQKSDDDD----DWTAAFDDVPEAAPSAQLARRIATVLRDWI 584

Query: 358  GTDTIFSNGKK--RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
              + I     +  R I   D+LVLVRKR     +  L R LK    I V G DR  LTDH
Sbjct: 585  DNEMIEDQKTRKLRPITPGDVLVLVRKRDG--FVPTLLRTLKAMTGIPVAGADRLRLTDH 642

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            +A++DLMALG F+L  EDDLS   ++KSPL    ED +F++   R +  +V+ ++ + A 
Sbjct: 643  IAVQDLMALGSFVLLDEDDLSLAALIKSPLLGLDEDALFRLAAGRPDGLSVWNHLLELA- 701

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                 F      +     +A    PHDF+  +LG   GRQ ++SR G+E  DVLDEFL  
Sbjct: 702  KTEPLFASARNRLVRWRAMAHIQPPHDFYATVLGPDGGRQAYLSRLGHEAGDVLDEFLGL 761

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            TL +EQ     LQ  ++ LE   P IKR   A    VRIMTVH AKGLE+P+VFLVD+G 
Sbjct: 762  TLDHEQAGLPGLQAFLAMLESDAPEIKREMEAGSGAVRIMTVHAAKGLEAPIVFLVDSGG 821

Query: 596  QVFSHKHIKKMHIMP----SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            + F   H   + ++P      +D P +P+W+P     N   + L +  K+  +EEY RLL
Sbjct: 822  EAFQTSHQPNLWLIPQGPHQGSDGPSVPVWLPDKTYNNGATNPLRELAKEQAEEEYRRLL 881

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQ--------RTWYDMVYDSFHNDERVKKIKLTNS 703
            YVG+TRA+D+L++C +      K                +    +    ER         
Sbjct: 882  YVGLTRAADRLVVCGYRGLKEAKSPTWHTLASAGFERAAEAGDYAVGEIEREADNTTFPV 941

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
            +          +   P     ER      +      P               +L  S   
Sbjct: 942  LRLQRAAPAPVAPGEPAADSKERTAAPAPIPSSPLPPPTRLPRPLAPSGVGAVLEDSANL 1001

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                   +          RG +IH+LLQV+ ++P  +R   +  Y  +        E   
Sbjct: 1002 ANRSPFADKPAGSGAALERGSMIHRLLQVLPSIPPEERDAALERYLERALPGADRSEAGL 1061

Query: 824  LLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
            +   +  +L++       +     +EVSV G +    ++  +SGRID+I++    + I +
Sbjct: 1062 IAGQVRSVLDDARFAGVFAAQQGEAEVSVMGTLRIAGEERAVSGRIDRIAVLADRVLIVD 1121

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            YKT    P   E  P++H++QL+IY  +L   YP++ +   LIYVS P +  IP+  L+ 
Sbjct: 1122 YKTG-LAPGSGEPPPHSHVSQLAIYRALLAPLYPDRKIEAALIYVSGPVLVPIPETALDA 1180

Query: 943  AFAEISTK 950
            A   +  +
Sbjct: 1181 AMMALEPR 1188


>gi|209965882|ref|YP_002298797.1| helicase, UvrD [Rhodospirillum centenum SW]
 gi|209959348|gb|ACI99984.1| helicase, UvrD [Rhodospirillum centenum SW]
          Length = 1171

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 251/957 (26%), Positives = 419/957 (43%), Gaps = 35/957 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-T 59
            +     +    S + +         F  + +         +G      +A  LQ      
Sbjct: 231  VHRFLRVERGASMDDVVARACRDGSFDEAGLRAACRALAGSGGKQDGARAIALQAWLDGP 290

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                  F      FLT++   +K+++ ++     P   E L++     + +        +
Sbjct: 291  AGRVAGFQEYGLLFLTREGEVRKSLLGRKAADADPAALEALQREAQRILDVTAEMKCVGV 350

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEIN 178
             ++T A LTLA+ +   Y   K+   +LDF+DLI+  + LL       AW+ YK+D  ++
Sbjct: 351  AQATAALLTLAEAMLETYARLKRARALLDFDDLILTASRLLAGEGRACAWVLYKLDGGLD 410

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNT-HSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL+DE QDT+  QW+V++++ E+FF G+       RTLF VGD+KQSI+SF  A+P   
Sbjct: 411  HILVDEAQDTNPEQWDVVKAIAEEFFAGQGAADDRRRTLFVVGDDKQSIFSFQRADPAEF 470

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
             R +R    R   A  ++  + L  SFRS   +L  VD VF +P+   G++ED T  + H
Sbjct: 471  ARMRRHFADRVAAAQARWEPVNLQTSFRSVGAVLRCVDAVFRLPQARDGVAEDGTE-VCH 529

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            R  R G  G V+LW  +  +      P    WT   +    E+  + LA  +A  I++ +
Sbjct: 530  RPFRRGMAGRVELWPVLAPEEAGDPAP----WTPPTEMERVEAPLARLATLVADQIAHWL 585

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
             +       + R ++  DI+VLVR+R     +  L R LK+   + V G DR +LT+ LA
Sbjct: 586  RSGERLE-ARDRPVRPGDIMVLVRRRN--RFVQHLVRALKDR-DVPVAGVDRMVLTEQLA 641

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            ++DLMALGRF+L  EDDL+  C+LK PL   +E+ +F +   R             A+  
Sbjct: 642  VQDLMALGRFLLLPEDDLTLACVLKGPLIGLTEEALFDLAWDRPGHLWPALARAAEADPD 701

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK------KGRQQFISRFGNEVIDVLDE 531
               F   + ++  L+    F +P + F  +L          GR+  ++R G E +D +DE
Sbjct: 702  GGPFLRAVGWLRGLLAETDFRAPFELFAGVLSRPCPADPVSGRRALLARLGAEAVDPVDE 761

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN----EVRIMTVHTAKGLESPV 587
            F+   L  E+    SL+  +  LE     IKR   A        VRIMTVH +KGL++PV
Sbjct: 762  FVAAALSFEREHVPSLETFLHWLEAGRAEIKRELDAGGGPAGGRVRIMTVHGSKGLQAPV 821

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V L DT S            + P   D   +P++ P+    +       +       +EY
Sbjct: 822  VILPDTMSVPEQSPR----ILWPDGTDGREVPLFAPRRALEDPACQSARRAADHRRDQEY 877

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             RLLYV +TRA D+LI+C     +  +      WY +V  +       +    T      
Sbjct: 878  RRLLYVALTRAEDRLIVCGW--EAGRRTGGDGCWYRLVEQALKAVAEEQDYDFTVVSPAG 935

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
                           P        +      +P+   +    +      L PS  +   +
Sbjct: 936  WQGPGLLLREAQSAPPKPDSLEAGEEPAGVTLPEWARAGAPAEPAPSRPLTPSRPEGV-E 994

Query: 768  TNLESLLSDNQTFN--RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
              + S L         RG ++H LLQV+  LP   R     ++  +       ++   + 
Sbjct: 995  PPVRSPLGAEDGLRFKRGSLVHTLLQVLPDLPAETRGPAAAAWLARPLHGLTPEQQAEIA 1054

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                R+LE+P         S +EV + G +        +SG+ID++ ++   ++I ++KT
Sbjct: 1055 AETLRVLEDPDFAPLFGPGSRAEVPIVGLV----GGRALSGQIDRLLVTDTAVWIVDFKT 1110

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            +   P     +P  ++AQ++ Y + L+  YP   + CLL++   P    +    L++
Sbjct: 1111 NRPPPTVEADVPPVYLAQMAAYREALRRIYPGLPVRCLLLWTDGPFTMELSPAALDR 1167


>gi|209883635|ref|YP_002287492.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans
            OM5]
 gi|209871831|gb|ACI91627.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans
            OM5]
          Length = 1161

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 249/956 (26%), Positives = 437/956 (45%), Gaps = 30/956 (3%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
               G++++   + + +++   P+   S   +  + + E G  T   +     +A+     
Sbjct: 228  RALGVAMDAQCDAVEREMVEGPHLPRSRWIEAAN-AFEDGGKTDATQGAR-LRAAAALTG 285

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            E +       F T + + +K+++T+ +      L   L + Q     + DR         
Sbjct: 286  EAQLEAYLGVFFTGEGSERKSLMTKSLTAMHGALAAALSQEQPRLRALADRRRAIIQRDR 345

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            T A L +A  + AHY   K+   +LD++DLI  T+ +L     ++W+ +K+D+ I+H+LI
Sbjct: 346  THALLVIASAVAAHYRREKQARGLLDYDDLIDKTHAMLTG-GYASWVHFKLDRGIDHVLI 404

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            DE QDTS  QW++I S   +F  G        RT+FAVGDEKQSI+SF GA P+     +
Sbjct: 405  DEAQDTSPRQWDIIESFVSEFTAGAGARGEIHRTVFAVGDEKQSIFSFQGAAPREFDLRR 464

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            R    R  +A   F  +    SFRS A IL  VD VF      + +  D    + H +  
Sbjct: 465  RAMATRHAHANLSFESVSFKHSFRSGAAILDSVDYVFREQTIYRSIHIDDAYPV-HDALP 523

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                 TV+LW       +     + E W + FD++   S    LARR+   I  +I   T
Sbjct: 524  DAAPATVELWPV----EEPDTREEIEGWQAPFDTVSPASPEVKLARRVESEIKALIAAGT 579

Query: 362  IFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G++R ++  D+++LVR+R        + + LK    I V G DR  LT H+A+ D
Sbjct: 580  MTGPLGRRRRLRYGDVMILVRRR--GAAFDAVIQALK-HAGIPVAGADRLKLTAHIAVID 636

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            LM L   +L  +DDL+    LKSPLF  ++DD+  I      T ++ E +   A     +
Sbjct: 637  LMHLADALLLPQDDLALAVALKSPLFGLTDDDLLTI--APTRTGSLREALAAHA-ASSER 693

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG----RQQFISRFGNEVIDVLDEFLNFT 536
             +   +++      A   +P  FF  +LG   G    R + + R G+E  D LDEFL   
Sbjct: 694  LRIASEFLETCAMRAARMTPFAFFAWLLGGDSGGHGGRARILKRLGHEANDALDEFLELA 753

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            L  E+ + +SLQ  I+ L      +KR      +EVR+MTVH AKGLE+ VVFLVDT + 
Sbjct: 754  LTYERKAPASLQGFIAWLRAADTDVKRDMEILRDEVRVMTVHGAKGLEASVVFLVDTTTS 813

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                + ++ +H+         + +W          V+     ++   ++EY RLLYV MT
Sbjct: 814  PSDTQRLRLIHMPHGNAGPGEVVLWAGAKDDDTEDVARARDTMRGEIEDEYRRLLYVAMT 873

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA+++LI+       N     + +WYD++         V        +      A  ++ 
Sbjct: 874  RAAERLIVGG-CKPGNRNNVRELSWYDLIEKGLAASPLV-----LTEVETPFGPAKRYAR 927

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS- 775
                   + R++      + + +P  L++       +   L PS+        L +  + 
Sbjct: 928  KDEAALDIARDDAASAPAELKSLPDWLYADAPQVRAKEITLAPSSAGGDTAAPLSAEQTI 987

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
              +    G  +H+LLQ +  L +  R+     +  ++ +    +E   L+  +  L+++P
Sbjct: 988  LQRARLTGQWVHRLLQSLPDLAQEAREAAALRFLARHVQDASEEERTTLIRQVLALIDDP 1047

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
                     S +EVS++G++      + +SG+ID++ ++   + I +YKT          
Sbjct: 1048 RFAALFGPGSRAEVSIAGRLTLNGTSVRVSGQIDRLVMTPDEVMIVDYKTGAVPQG---A 1104

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            +P  ++ QL++Y  +L    P + + C L++   P++  +P + L+   A ++ + 
Sbjct: 1105 MPPHYVRQLALYRAVLAKLSPGRPVRCALLWTQGPQIVEVPPSTLDAELASLARRA 1160


>gi|126732963|ref|ZP_01748724.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula
            stellata E-37]
 gi|126706580|gb|EBA05656.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula
            stellata E-37]
          Length = 1123

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 254/961 (26%), Positives = 395/961 (41%), Gaps = 54/961 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            ++  +GL  ++  + +   ++       +D+   +    + G  T       LQ      
Sbjct: 206  IRAAYGLKPDDGEDSLLASVFLGNE---TDLAAALVPHFKAGGKTEQGLVPLLQSIRGRD 262

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                    L    LTQ  T +KN  T+   K +P+L E   +         +        
Sbjct: 263  T--RTLGTLKQICLTQAGTIRKNFPTKATRKNAPELCEAYDQLAARVEGALETEKALIAA 320

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
               +A    A      YEEAK +   LDF+DLI    DLL    V+ W+ Y++D  I+HI
Sbjct: 321  DRDIALTAFAARFVPAYEEAKMRRGWLDFDDLITRARDLLSDERVADWVLYRLDGGIDHI 380

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QDTS +QW+VI  L  +F  G+    + RT+F VGD+KQSIYSF GA+P    R 
Sbjct: 381  LVDEAQDTSPVQWDVIERLAREFTSGEGARETRRTIFVVGDKKQSIYSFQGADPSEFDRM 440

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +   ++R  N     + + L  SFRS   IL VVDK F   + +       +   +HR+ 
Sbjct: 441  REHFRERLMNTDAPLNAMVLEYSFRSADPILRVVDKTFEGADASGF-----SADQKHRAF 495

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            + G  G V LW  V    D +  P    W    D         ILA+RIA  I   I   
Sbjct: 496  KSGMPGRVDLWPVVDKTRDDEDGP----WHQPLDRKGARHHTVILAQRIARFIRRTIDAG 551

Query: 361  TIFSNG-------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            T              R + A D L+LVR+R    L   + R  K +  + + G DR  + 
Sbjct: 552  TPLPEENGHSGTYHARPVHAGDFLILVRRRSQ--LFKEIIRACKQE-DLPIAGADRLKVM 608

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
              LA++D++AL  F+ + ED LS    L+SPLF  SE D+F +  +R             
Sbjct: 609  AELAVRDIIALLSFLETPEDSLSLATALRSPLFGLSEQDLFTLAHRRTTK------YLWP 662

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                      V+  +++L     F  P+D    IL   KGR+  I R G E  D ++  L
Sbjct: 663  TLRDSEAHPAVLAVLNDLRGQTDFLRPYDLIERILTRHKGRRLLIGRLGQEAEDGINALL 722

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               L  EQ +  +L   +   +     IKRA  +    +R+MTVH AKGLE+P+V L D 
Sbjct: 723  QQALAYEQTAVPTLTGFLQWAQSDDLQIKRAPDSAGETLRVMTVHGAKGLEAPIVILPDC 782

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                          I   L  DP   IW   S ++       ++  K    +E +RLLYV
Sbjct: 783  A--------APDASIKAELLSDPDGVIWKQTSDAQPPRQQAAVEAAKVKEAQERDRLLYV 834

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
             +TRA   LI+    + +++       WYD V         +        +   E +   
Sbjct: 835  ALTRAEKWLIVAAAGDGTDK----PEAWYDKVRLGMIGSGAMPSAFEFGDLGSGEGL--- 887

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
              T   + + LE  +         ++P  L  PI      P   +PS +           
Sbjct: 888  --TLGTDWSGLEMRDPHPLTRQTVEMPAHLLRPISPPEELPKTRSPSDLGGAKALGGAEG 945

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL----WPAKEYKNLLLSIT 829
             ++     RG  +H  L+V+  LPE  R++   S   + A         ++   +L    
Sbjct: 946  DTEEVATARGTALHGFLEVLAPLPEKDRRHAGDSLLQQYASDTETVLIHEQLPQILDEAL 1005

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
            R+LEN         DS +EV ++  +        I G ID++ +    +   +YKT+   
Sbjct: 1006 RVLENADFADFFGPDSLAEVPITADLGPLG---RIHGIIDRLLVGHSRVVAIDYKTNRTT 1062

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
            P   E  P   + Q+++Y   L   YP++ +   L++ +      IP   + +A A  + 
Sbjct: 1063 PATPEETPDGLLRQVAVYHAALAQLYPDREIETGLLWTATNHYMPIPHELVTQALARATA 1122

Query: 950  K 950
             
Sbjct: 1123 S 1123


>gi|260431946|ref|ZP_05785917.1| double-strand break repair helicase AddA [Silicibacter
            lacuscaerulensis ITI-1157]
 gi|260415774|gb|EEX09033.1| double-strand break repair helicase AddA [Silicibacter
            lacuscaerulensis ITI-1157]
          Length = 1119

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 234/963 (24%), Positives = 403/963 (41%), Gaps = 68/963 (7%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L  RFGL      + +   ++        ++ + +  ++  G  T  K A+ L     T+
Sbjct: 208  LLARFGLPEGFDEDALLAQVFLGGEV---ELIRSILPALAGGGKTDAKAAEKLSGF--TE 262

Query: 61   CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDL-KEKLKKSQDEFIKIRDR 113
                +  +L   FLT K   +       +  T+ + +       + L+         R+ 
Sbjct: 263  PALGQLPVLEDVFLTGKSAKEPFTAKIGSFPTKALREGVLAGQMDPLEALMRRVEAAREG 322

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                   + ++     A      YE  K+    LDF+DLI+    LL    V+AW+ Y++
Sbjct: 323  RLALAAARKSMVLHRFAAVFLPEYERRKQLRGWLDFDDLILRARLLLNDPAVAAWVLYRL 382

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGA 232
            D  I+HIL+DE QDTS  QW+V+  L ++F  G+   S   RT+F VGD+KQSIYSF GA
Sbjct: 383  DGGIDHILVDEAQDTSPDQWDVVEKLAQEFTSGEGARSGVERTIFVVGDKKQSIYSFQGA 442

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P+   R +    ++   +G K     L  SFRS++ IL++VD +F    +A        
Sbjct: 443  DPQAFDRMQAEFGRKLQESGSKLWDWTLEYSFRSSSAILSLVDILFENRADAGF-----Q 497

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
               +H + +    G V LW  V    D+     +  WT   D    +    ILA +IA  
Sbjct: 498  KESQHLAFKADLPGRVDLWPVVEKVEDTD----EGDWTDPVDRPAAQHHTVILANQIAAR 553

Query: 353  ISNMIGTDTIFSNGKK-------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            I  MI                  R ++  D L+LV++R D  L   + R  K    + + 
Sbjct: 554  IKAMIDAGETIPEDGPTRGTFVRRKVRPGDFLILVQRRSD--LFAEIIRACKAQ-GLPIA 610

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
            G DR  +   LA+KDL AL  F+ + EDDLS   +LKSPLF +SE  +F +  +R E   
Sbjct: 611  GADRLKVGAELAVKDLAALLSFLATPEDDLSLATVLKSPLFGWSEQMLFDLAHRRQER-Y 669

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++  +++ A      F   +  +++L     F  P+D    +L    GR++ + R G E 
Sbjct: 670  LWAALRQRAGD----FPETLAVLNDLRGQVDFLRPYDLIERVLTRHDGRRKLLGRLGAEA 725

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             D ++  L+  L  E++   SL   +  ++     IKR  +   + +R+MTVH +KGLE+
Sbjct: 726  EDGINALLSQALAYERSDIPSLTGFLVWMQTDDLEIKRQMTGVGDMIRVMTVHGSKGLEA 785

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            P+V L DTG +               +    G P+W   +     +V+   +  ++  + 
Sbjct: 786  PIVILPDTGKRQPPRD--------AEIMVADGTPLWKVPADLSPELVARAREDARQREEN 837

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E  RLLYV +TRA   LI+    +   +      +WY +V ++       +         
Sbjct: 838  ERLRLLYVALTRAEKWLIVAAAGDLGKDG----SSWYQLVEEAMGRAGATEIPGTGIRRL 893

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                       H P   P++             +P     P    I +   L+PS +   
Sbjct: 894  AHGDWEGLPLDHRPTPDPVQ-----------DSLPDLFHRPAPEPIPDAETLSPSDLGGA 942

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                 E+ L +     RG  +H LL+ +   P  +                   + ++LL
Sbjct: 943  KALPGETGLEEEAAKLRGTRLHLLLEHLAQAPRDRWDQLCARLL----PDMQDGDRRDLL 998

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                 +L  P +    + D+ +EV VS  +        I G ID++ ++   + + ++K+
Sbjct: 999  AEAAGVLTAPDLAPVFAPDALAEVPVSATV----DGRRIHGVIDRLIVTDDVVQVIDFKS 1054

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            +  VP   E  P   + Q+  Y   L   YP + +   +++    ++  +P + + +A  
Sbjct: 1055 NATVPDRAETCPEGLLRQMGAYVAALSQIYPGREIRTAILWTRTARLMWLPHDLVTQALG 1114

Query: 946  EIS 948
               
Sbjct: 1115 RAQ 1117


>gi|144899270|emb|CAM76134.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1146

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 267/949 (28%), Positives = 450/949 (47%), Gaps = 28/949 (2%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT-Q 60
            + R GL   ++ E I            + + + V + +  G  T  +K   L       +
Sbjct: 221  RTRLGLESGDTAETILAAACTDEACNAATLRQAVPILLN-GAKTDQEKGTRLAAWLAAPE 279

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               + F+      LT K   +  ++T  +    P L+  L+   +  I++  R    ++ 
Sbjct: 280  TRAQAFAEYCLSVLTAKGEMRAKLVTNGLRDAHPWLEPALQAEAERLIRVNARLKAAQVA 339

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + T A   L   L A YE+ K+   ++D++DLI+   DL+ +  V+ W+ +K+D  I+H+
Sbjct: 340  QCTAALTRLGHALLAAYEKRKQGRALMDYDDLILAARDLMARPGVAPWVLFKLDGGIDHV 399

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            LIDE QDT+  QW V+ +LT +FF G     S RT+FAVGD KQSIYSF  A+P+     
Sbjct: 400  LIDEAQDTNPDQWAVVAALTGEFFAGLGARESLRTVFAVGDIKQSIYSFQRADPQAFDDM 459

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +++       A +++  + L LSFRST  +L  VD VF+     +    D     RH + 
Sbjct: 460  RKLFAHHVPLAKREWREVPLNLSFRSTRAVLDAVDAVFAGDGPGRDGVTDDDPDPRHLAF 519

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            R GQ G V+LW  V+     +   +  +W    + L  +S  + LAR +A  I+ MIG +
Sbjct: 520  RQGQAGLVELWPPVIP----RPADEIPAWKPPIERLRGDSPRTRLARLMAARIAAMIGAE 575

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             +    + R I+A D+LVL+R+R     +  L R LK D KI V G DR +LT+ +A+ D
Sbjct: 576  IL--ESQNRPIRAGDVLVLLRRRGG--FVEDLVRELK-DLKIPVAGADRMVLTEQMAVMD 630

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            LMALG F+L  EDDL+   +LK PL   SED++F++   R E  ++++ +++ A    + 
Sbjct: 631  LMALGNFLLLPEDDLTLATVLKGPLVGLSEDELFRLAWNRGE-ASLWDTLKRKAGS-EAA 688

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            F     Y+  L+ +A   +P   F  +LG   G++  ++R G E  D LDEF+  T+  E
Sbjct: 689  FARAEDYLSPLLALADRLAPFALFAHVLGKLGGKRALLARLGPEAEDPLDEFMALTMAFE 748

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +    SLQ  +  LE     IKR       + VRIMTVH +KGL++P+VF+ DT      
Sbjct: 749  RGHPPSLQGFLRWLESGGTEIKRDLEQGGRDAVRIMTVHGSKGLQAPIVFMPDTLQMPIQ 808

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                    ++ +   +  I +W P+++  ++I        K + + EY RLLYV MTRA 
Sbjct: 809  GPR-----LLWNGGPEDEILLWPPRAEMADDICEAARAAQKLAREREYRRLLYVAMTRAE 863

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            D+L +C        + + Q  WY+++  S        +     +  + +       T   
Sbjct: 864  DRLYVCGWETL---RAAPQGCWYNLIRTSLEPLAARMEDPFLAAAGETDDATVLRLTCRQ 920

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
            E+  +E +   +       +P         +   P  L PS  + +       L SD   
Sbjct: 921  EH-AVEAQTFAEAEALLPALPAWARLTAPPEPAPPRPLAPSQPEGEEPPARSPLSSDGAG 979

Query: 780  F-NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               RG ++HKLLQ++  LP  +R      +      L  +     +   ++ +L++    
Sbjct: 980  RFKRGKLVHKLLQILPDLPRDRRAQAAIRFLKGTGGLDTSAALA-IANEVSDILDHAGFA 1038

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
               +  S +EV + G I    +   +SG++D++ ++   + + +YKT+   P   E IP 
Sbjct: 1039 PLFAPGSKAEVPIVGLI---GESRALSGQVDRLVVTATEVLVADYKTNRRPPAVSEAIPD 1095

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
             ++ Q++ Y   L   YP+  + C L++   P +  I    L+ A   +
Sbjct: 1096 LYVRQMAAYRLALACIYPHHRIRCALVWTDGPALREIEPAALDDALDSM 1144


>gi|319898220|ref|YP_004158313.1| ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73]
 gi|319402184|emb|CBI75715.1| putative ATP-dependent nuclease subunit A [Bartonella clarridgeiae
            73]
          Length = 1152

 Score =  578 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 302/965 (31%), Positives = 486/965 (50%), Gaps = 48/965 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+  F L+ NE+ + +   +          I  Y + S     P      +   Q +   
Sbjct: 218  LRTFFNLAPNETNQKLLDKIQQTATLPSYAIKHYQTYS----TPKNKDIIEKFLQLATAS 273

Query: 61   CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                  +L+S+ +  +   P+    + +++ ++  P ++++++  Q++   + +++   K
Sbjct: 274  DETNIINLVSNIYFVKAGKPRDFSRLFSKKSDEIWPFIEKEIEDKQNQLSILLEKYQCLK 333

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +    +A+  L       Y + KK N VLDF+DLI  T  LL+ +  S W++YK+D+ I+
Sbjct: 334  LITLNIAAFQLCYIYLKIYADLKKVNNVLDFDDLIERTLHLLQHKGASQWVQYKLDRGID 393

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDT+  QW++I+ L ++FF G +  ++ RT+FAVGDEKQSIYSF GA P+   
Sbjct: 394  HILLDEAQDTNPKQWQIIQLLAQEFFAGHSQRTNIRTVFAVGDEKQSIYSFQGAVPENFA 453

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
               R+ QK+     QKF  I+L  SFRSTADIL  VD VF  PEN +GLS +   T+ H 
Sbjct: 454  ENGRMIQKKVQQVEQKFEKIQLNYSFRSTADILKSVDLVFETPENYKGLSAEHVKTV-HE 512

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
              R+   G V +W+ +      + N   + W S  D L  ++    LA +IA TI+N + 
Sbjct: 513  PIRVHSPGDVIIWDTIS----QKTNELPDDWLSTVDHL--DTPQIRLAEKIAETIANWLK 566

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
               +    K R+++A DI+VLVRKR     ++ L+R LK  + + V G DR  LT H+++
Sbjct: 567  NGEMLPAKK-RLLRASDIMVLVRKRDQ--FVSALSRALKLRH-VPVAGADRLQLTAHISV 622

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             DLMAL RF+L  +DDLS  C+LKSPLF+ SE++++++  QR    +++E +    +   
Sbjct: 623  LDLMALARFVLQPQDDLSLACVLKSPLFSLSENELYQLAAQRK--GSLWESLCTHTSSH- 679

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            + F+ +   ++    +       +F++ IL   KGRQ+ ++R G E  +VLD F++ TL 
Sbjct: 680  ASFKTIFDRLNTYRALVDKMPVFEFYSYILNNDKGRQKILARLGTEANEVLDAFMDHTLT 739

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++     LQ  +  L    P IKR    N  EVRIMTVH AKGLE  VVFLVD GS ++
Sbjct: 740  IQKTGLPGLQAFLEILSINEPEIKRELDQNCEEVRIMTVHAAKGLEGAVVFLVDPGSAIW 799

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              K+            D    IW P ++        ++  LK+  +EEY RLLYVGMTRA
Sbjct: 800  HPKYAPHFLKF--FLGDKQTFIWRPNAQHHTKHFDKVLSRLKERAEEEYKRLLYVGMTRA 857

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             D+LIIC +SN     K    TW  +V  +        K         ++  A+ +    
Sbjct: 858  EDRLIICGYSNQ----KETPNTWLQLVKKALKPHAVSIK------GPAEDIAAWRYCITS 907

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL----- 773
              +TP+ +E           +P      +  +      L PS                  
Sbjct: 908  SCSTPMYQEIPCDAHHVFPPLPAFFHDKMPTESTLSKPLRPSVAGIIDAKTEFFPNKKHF 967

Query: 774  ----------LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                           +   G  IHKLLQ +      KR+++   Y    A  W   + +N
Sbjct: 968  SLSPVLEEKNTKRTFSIEYGNFIHKLLQHLPNYTPTKRQDYAQFYLNTKASHWHKTQREN 1027

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
             L  I ++L+NP +    S  S++EV++ G +    K+ IISG+ID++ I+  ++F  ++
Sbjct: 1028 ALHHIWKILDNPKLKPLFSRFSHAEVALMGIVKINGKEQIISGQIDRLCITDNSVFFADF 1087

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            KT    P+    I   H+ Q+++Y+K+L+  YPNK++  LLIY+ + K+F +   KL+  
Sbjct: 1088 KTG-LPPENDTDIAQRHLLQMALYQKLLQAIYPNKNMQALLIYIKKAKIFKLLPEKLDAL 1146

Query: 944  FAEIS 948
              E+ 
Sbjct: 1147 LDEMI 1151


>gi|83594763|ref|YP_428515.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170]
 gi|83577677|gb|ABC24228.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170]
          Length = 1187

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 264/957 (27%), Positives = 445/957 (46%), Gaps = 34/957 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +++  GL+ +++ E +  D      F    +    + ++  G  T  ++   +       
Sbjct: 245  IRDSLGLAADDTPETVLADGCAEGAFDGPSLRAA-AAALIAGGKTDQERGLRIAAFVSET 303

Query: 61   CIEER---FSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                R   F      FLT+    P K + T+ + K  P   E L+  Q     +R+R   
Sbjct: 304  DPAIREGLFWTYIGAFLTKTDEKPVKTLCTKPVEKAHPGTLESLEAEQQRIWTLRERLRA 363

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                +++ A LTL   +   Y+  K+    +D+EDLI+    LL     +AW+ +K+D  
Sbjct: 364  ATTAQASEALLTLVGAMLKDYQRRKRALGRMDYEDLILAARRLLAGDGAAAWVLFKLDGG 423

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFF--VGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            ++H+L+DE QDTS  QW +  +L  +FF    +   + PRT+FAVGD KQSIY F GA+P
Sbjct: 424  LDHLLVDEAQDTSPDQWAIASALAGEFFTDSARWDGTRPRTVFAVGDRKQSIYGFQGADP 483

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS--- 291
            K     +R      ++ G  F+ + L +SFRST  +L  V+ VF+      G+++D    
Sbjct: 484  KAFEDMRRHFHDAVSDIGGHFAEVPLNISFRSTRAVLEAVNAVFARQPARDGVAQDDADS 543

Query: 292  --TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                 I H + R    G V+LW  +        +P    W    + +  ES+ + LA+R+
Sbjct: 544  GVAEDITHHAFRKDAGGLVELWPAMEPAPRVVGDP----WKPPVERIGLESARARLAKRV 599

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            A  I  M     +  + + R I+  DILVLVR+R                 K+ V G DR
Sbjct: 600  AQRIKTMTSGGELLES-QGRPIRPGDILVLVRRRGG---FEEELVSALKSAKVEVAGVDR 655

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              LTD LA+ DL+ALG+ +L  EDDL+   +LK PL    ED +F +   R   E +++ 
Sbjct: 656  MTLTDQLAVMDLIALGKALLLPEDDLTLASVLKGPLIGLDEDALFTLARDRGRDERLWDR 715

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG-AKKGRQQFISRFGNEVIDV 528
            ++  A    + +   ++ I  L   A   +PH+F+  +L     GR+  + R G E  D 
Sbjct: 716  LRPHAGA-ENAYGKAMEIIEPLRDRAGRLAPHEFYAHVLDGPLNGRRLLLGRLGPEAEDP 774

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPV 587
            +DEFL  TL +E+    +LQ  +S LE+    IKR       + VRIMTVH +KGL++PV
Sbjct: 775  IDEFLALTLAHERVGPPALQGFLSWLEKGTVEIKRDLDQGALDAVRIMTVHGSKGLQAPV 834

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            VFL DT ++   +     +           +P W P    R   +  +I  LK     EY
Sbjct: 835  VFLPDTLAKPTGND---LLLWTADKGVADALPFWCPSKADRGAAIEAMIDALKVERDREY 891

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             RLLYV MTRA+D+L IC        K+  +  WY +++D+     +  ++ L ++    
Sbjct: 892  RRLLYVAMTRAADRLYICGWETL---KRPAEDCWYALIHDALAASAQTVEVPLLDATGAL 948

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            +       T   E +P   +       + +        P   +      L PS +  +G 
Sbjct: 949  KDTEVLRLTCPQEGSPSPSDSAAPADEEGEAPAAWAALPPPLEPTPSRPLAPSHVGDEGA 1008

Query: 768  TNLE-SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                     D + F RG +IHKLLQ++  LP+  R      + ++ A    A+E   L  
Sbjct: 1009 ARSPLDGRGDPRRFLRGRLIHKLLQLLPELPDEDRGPAARRWLSRPAWALEAEEIGALSA 1068

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
             +  +L++P      +  S +EV + G +     + ++SG++D+++++   + I +YKT+
Sbjct: 1069 EVLAVLDDPAFRAVFAPGSRAEVPLVGLV----GNHVVSGQVDRLAVTDDEVLIVDYKTN 1124

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
               P+ ++ +   +I Q++ Y  +L   +P++   C+L++   P    IP  +L + 
Sbjct: 1125 RPPPRAVDLVDIAYIRQMAAYRALLAQVFPSRVARCVLLWTDGPFAMEIPAERLAEE 1181


>gi|254470933|ref|ZP_05084336.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062]
 gi|211960075|gb|EEA95272.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062]
          Length = 1156

 Score =  576 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 288/953 (30%), Positives = 452/953 (47%), Gaps = 36/953 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   F +   +        L         ++  +   ++  G+ T   +A  L QA   +
Sbjct: 222  LYADFSVMPEDDISDFASALRRKCSLTDDEVKAFAE-ALRVGSKTDQDRANALDQAITLK 280

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              E         FLT    P+K++ T+++    P++ E+L   Q   ++     N     
Sbjct: 281  SDEAWRIAWLKIFLTGTLGPRKSLATKKVQTAFPEVVERLFAEQLRVLEALQHQNAVITV 340

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              T A L L+  +  +YE  K +   LDFEDL++ +  LL + + + W++YK+DQ ++HI
Sbjct: 341  SGTKAILILSDAVLRYYETEKLRRGYLDFEDLVVKSAQLLSRAEAAQWVQYKLDQGLDHI 400

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QDTS  QWEVIR+L E+FF G       RT+FAVGDEKQSIYSF GA P      
Sbjct: 401  LVDEAQDTSPRQWEVIRALAEEFFAGDGAREKVRTIFAVGDEKQSIYSFQGAVPAYFAEM 460

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            ++   +RA  A + F  IEL LSFRST D+L  VDKVF  PE  +GLS+D+   + H + 
Sbjct: 461  RKFFARRAEEAQKNFEGIELNLSFRSTPDVLGAVDKVFDTPETYKGLSQDNVAPV-HEAI 519

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            R    G V++W       ++    + + WT   D++   +    LA RIA  I +     
Sbjct: 520  RHNDPGRVEIWPL----EEAVETLEPDDWTQPIDAIGTGNPMLRLATRIAEQIKDW---- 571

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                  ++ +    D+LVLVRKR                  +   G+DR +LTDH+A+KD
Sbjct: 572  -----DERNIAGPGDVLVLVRKRG---PFVEALNRELKRLDVPAAGSDRLVLTDHIAVKD 623

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN--CGI 478
            L+ALGRFIL  EDDLS  C+LKSPLF   +DD+F+I  +            +        
Sbjct: 624  LVALGRFILLPEDDLSLACVLKSPLFGLLDDDLFEIAHETPGVPRPGTLWHELLRKSENS 683

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             K+Q V K +      A F  P +F+  I+G    RQ+F  R G EV DVLDEFL+ TL 
Sbjct: 684  EKWQTVRKQLEVWRDRADFVPPFEFYAKIMGTDGYRQKFRERLGTEVDDVLDEFLSLTLT 743

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E++    ++  ++ L + P  IKR  +A    VRIMTVH +KGLE+P V L D  +   
Sbjct: 744  YEKSGTPGMEGFLAWLAEAPTEIKRELNAAKGMVRIMTVHGSKGLEAPYVILADGCNAPV 803

Query: 599  SHKHIKKMHIMPSLNDDPGIP--IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            S  H   M       D    P  +W+P    R     + ++ L    +EEY RLLYV +T
Sbjct: 804  SSLHAPVMVEKQRAGDTEAAPALVWLPNKAQRTAWHEEALELLADEQKEEYRRLLYVALT 863

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA D+L++C  S     K+      +  +  +   +E  ++      ++   W       
Sbjct: 864  RAKDRLVVCGWSP----KRGPHDECWYTLTRNGLIEEAREQTDANGEVSAWIWTKGGIEK 919

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
              P     E+ E+ +Q      I K + +P +             ++ K     +     
Sbjct: 920  PEPVLPQSEKAESQQQAAMPDWISKNVSAP-ERIRRLKPSAAFEEMEAKESIEQQDPKDA 978

Query: 777  NQTFN--------RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
             +           RG I+H+LL+ +  LPE +R      +   +       + + LL  +
Sbjct: 979  LEAARQPEDWPLVRGRIVHRLLEFLPDLPEDQRIVSTERFLASSLPERFEDKRERLLDDV 1038

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD-IIISGRIDQISISQQNIFIFEYKTHH 887
               L  P      S +  +EV + G +       + I G ID++ ++ + + I ++KT+ 
Sbjct: 1039 LGTLGAPEFAELFSANGRAEVPIQGMLTGEDGKPVEIFGLIDRLLVNDEEVIILDFKTNA 1098

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
            +VP+ ++ +  T++AQL++Y K+L + YP+K +  LL+Y S P++  IP   +
Sbjct: 1099 YVPRSVQDVSETYVAQLAVYRKLLSELYPDKRIRALLLYTSGPRLIEIPVELM 1151


>gi|254439061|ref|ZP_05052555.1| double-strand break repair helicase AddA [Octadecabacter antarcticus
            307]
 gi|198254507|gb|EDY78821.1| double-strand break repair helicase AddA [Octadecabacter antarcticus
            307]
          Length = 1128

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 240/964 (24%), Positives = 420/964 (43%), Gaps = 58/964 (6%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA-SQT 59
            L   F +  N + + +  D    P+  ++ I + + + + +G     K A  LQ     T
Sbjct: 207  LAQTFDIPKNLTLDGLI-DAIAGPH-DLAAIQQLIPICLTSG-ANDQKAAIKLQAINCNT 263

Query: 60   QCIEERFSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
                   +++   FL  K           +  T+ +   +PDL ++L          RD 
Sbjct: 264  GPDMTDLAVMEDVFLFGKDAKSPYGAKIDSFPTKAVRAANPDLIDELNDLMQRVEDGRDA 323

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
               +   + T A +  A      YE  K ++  LDF+DLI     LL+   V+ W+ +++
Sbjct: 324  RWCWLALEKTRALIAFATPFVQRYETKKVQSAALDFDDLISKAKALLEDPAVAQWVLFRL 383

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGA 232
            D  ++H+L+DE QDT+  QW+++R LT++F  G   +    RT+F VGD+KQSIYSF GA
Sbjct: 384  DGGVDHVLVDEAQDTAPDQWDIVRLLTQEFSTGIGANPDRERTVFVVGDKKQSIYSFQGA 443

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P    R             +    +EL  SFRS+A +L +VD+ F        ++E   
Sbjct: 444  DPDGFDRMSVHFSSELAKVEKPLHRLELLYSFRSSAAVLQLVDQTFK-----GEMAEGLG 498

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              I HR+ + G  G V +W  +         P++  W    D   + +   +LA +IA  
Sbjct: 499  DHIEHRAFKDGMPGRVDVWPVIEPSEK----PEERDWDDPVDLKGRTNHKVVLAAQIAAE 554

Query: 353  ISNMIGTDTIFSNG------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            I  MIG +T+           +R I   D L+LV++R D  L + +    K    + + G
Sbjct: 555  IKRMIGQETLPVKEVDDTEWSRRKITPGDFLILVQRRSD--LFSEIIAACKT-AGLDIAG 611

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             DR  L   LA+KD+ AL +F+  Q+DDLS    LKSPLF ++E  ++ +   R + +T+
Sbjct: 612  ADRLKLGGELAVKDISALLQFLALQDDDLSLAAALKSPLFGWTEKQLYDLAQPRKKRQTL 671

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            +E ++          +  +  +H+L + A F  P+D    +L    GRQ  I+R G+E  
Sbjct: 672  WEALRTSGTH-----EDTLAILHDLRNRADFLRPYDLINRLLIRHGGRQNLIARLGHEAE 726

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D +D  L+  L  EQ+S  SL   ++ L+     +KR   +  + +R+MTVH AKGLE+P
Sbjct: 727  DGIDALLSQALGYEQSSVPSLTGFLTWLQTEDVVVKRQMDSAGDRIRVMTVHGAKGLEAP 786

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L DT          +K  +   L    G   W P+S     ++ D+   +  +   E
Sbjct: 787  IVILPDTTK--------RKREVRGDLLTLGGHVYWKPKSDVMPQVMRDIQDDMLDAQDRE 838

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV +TRA + LI+    +          +W+  V  +  + + V       +I  
Sbjct: 839  RRRLLYVALTRAENWLIVAAAGDVGKGDN---DSWHRTVSSALDHLDAVDHPTAFGTIK- 894

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                   +S    +  P+       +    + +       + +    P I  PS +    
Sbjct: 895  ------RFSRWTWDAGPMVE---TTEATASKAVMPAFGKTLPDLPVLPGIRFPSELGGAK 945

Query: 767  KTNLESLLSDNQ-TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                E+    +      G IIH LL+++  +    R      +   + +        +L+
Sbjct: 946  TMEGETHTDTSDLALAWGSIIHFLLEILPEMDPTTRPGAAIGFTNNHPEAGLIPNIDDLI 1005

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                  L+ P ++   +    +E+ +S  +     D +  G ID++ ++  ++   ++K+
Sbjct: 1006 KEALATLDAPDLSWIFASG-LAEIPISATLPSLGNDRM-HGIIDRLIVTDTDVIAVDFKS 1063

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            +   P+  E  P     Q++ Y   LK  YPN  +  LL++        +P   L+ A  
Sbjct: 1064 NRVAPKTPEQTPDGLARQMAAYRDALKQIYPNHRIRTLLLWTKTGTTTELPNAMLDAALN 1123

Query: 946  EIST 949
             ++T
Sbjct: 1124 GVTT 1127


>gi|254718137|ref|ZP_05179948.1| ATP-dependent nuclease subunit A [Brucella sp. 83/13]
          Length = 855

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 285/864 (32%), Positives = 426/864 (49%), Gaps = 40/864 (4%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
             +        DR    ++ +  LA+L L   L   Y + K++  +LDFEDLI  T  LL
Sbjct: 1   DAAAARVKMGLDRLKELRLVRLNLAALALIDNLLQRYHDLKRRRGLLDFEDLITRTVALL 60

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +     W++YK+D+ I+HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVG
Sbjct: 61  ARNGAGQWVQYKLDRGIDHILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVG 120

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           DEKQSIYSF GA P     + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ 
Sbjct: 121 DEKQSIYSFQGAVPDDFAEQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFAR 180

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
           PE  +GLS        H + R  + G +++W+ +      +   + + W    D L    
Sbjct: 181 PEANRGLSG----ATVHSAIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA-- 230

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
            A  LA +IA TI   +    +   G+ R I  +DI+VLVRKR               + 
Sbjct: 231 PAVRLAEQIAATIRYWLDRGELIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNL 286

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            + V G DR  LT H+AI+DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R
Sbjct: 287 SVPVAGADRLQLTSHIAIQDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPR 346

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
              +T++EY+ + A+   ++   + K +    ++A      +F+  +L A   R++ ++R
Sbjct: 347 GAGDTLFEYLYR-ASRHDAELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLAR 405

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
            G E  D++DEF N+ L  E+     LQ  +  LE   P IKR      +EVRIMTVH A
Sbjct: 406 LGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAA 465

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKH 638
           KGLE  VVFLVD GS V++     K+       D P +   +W P S  +    +  I+ 
Sbjct: 466 KGLEGAVVFLVDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEK 525

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           LK   +EEY RLLYVGMTRA D+LIIC +       + +  TW+ +V D+          
Sbjct: 526 LKNRAEEEYRRLLYVGMTRAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVH 581

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            +T         A       P +     EE          +P     P+K +   P  L 
Sbjct: 582 PVTGV-------AARRYRKTPRSFIEINEEDQAGATSLPPLPLDYRQPMKAEPGLPRPLA 634

Query: 759 PSTIDTKGKTNLESLLS------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
           PS      + + E  L                   RG  IH LLQ +  +   KR++   
Sbjct: 635 PSGASALIEADEEPPLDLSSPVLEPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAA 694

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG 866
            Y  + A  WP  E      S+  +L++P      +  S  EV+V G I+   +D  +SG
Sbjct: 695 DYLARIAADWPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSG 754

Query: 867 RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
           +ID+IS+ +  + I +YKT+   P+ +E +P+ + AQL++Y ++L+  YP + +   L++
Sbjct: 755 QIDRISVDESRVLIVDYKTNRPPPKTLEAVPFAYRAQLALYRELLRPLYPRRVVEAALLF 814

Query: 927 VSEPKVFIIPQNKLNKAFAEISTK 950
              P +  +P   L+ A   +   
Sbjct: 815 TEGPFLLPVPDTVLDDAMGALKDT 838


>gi|265983090|ref|ZP_06095825.1| double-strand break repair helicase AddA [Brucella sp. 83/13]
 gi|264661682|gb|EEZ31943.1| double-strand break repair helicase AddA [Brucella sp. 83/13]
          Length = 847

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 285/854 (33%), Positives = 425/854 (49%), Gaps = 40/854 (4%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            DR    ++ +  LA+L L   L   Y + K++  +LDFEDLI  T  LL +     W++
Sbjct: 3   LDRLKELRLVRLNLAALALIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQ 62

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
           YK+D+ I+HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF 
Sbjct: 63  YKLDRGIDHILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQ 122

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA P     + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS  
Sbjct: 123 GAVPDDFAEQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG- 181

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                 H + R  + G +++W+ +      +   + + W    D L     A  LA +IA
Sbjct: 182 ---ATVHSAIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIA 232

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            TI   +    +   G+ R I  +DI+VLVRKR               +  + V G DR 
Sbjct: 233 ATIRYWLDRGELIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRL 288

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
            LT H+AI+DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+
Sbjct: 289 QLTSHIAIQDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYL 348

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
            + A+   ++   + K +    ++A      +F+  +L A   R++ ++R G E  D++D
Sbjct: 349 YR-ASRHDAELAQIHKLLSRWRNMADTMPVFEFYARVLSADGARRKLLARLGPEAGDIID 407

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           EF N+ L  E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFL
Sbjct: 408 EFQNYALSAERAGLPGLQAFLETLEAASPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFL 467

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           VD GS V++     K+       D P +   +W P S  +    +  I+ LK   +EEY 
Sbjct: 468 VDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYR 527

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           RLLYVGMTRA D+LIIC +       + +  TW+ +V D+           +T       
Sbjct: 528 RLLYVGMTRAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV----- 578

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
             A       P +     EE          +P     P+K +   P  L PS      + 
Sbjct: 579 --AARRYRKTPRSFIEINEEDQAGATSLPPLPLDYRQPMKAEPGLPRPLAPSGASALIEA 636

Query: 769 NLESLLS------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
           + E  L                   RG  IH LLQ +  +   KR++    Y  + A  W
Sbjct: 637 DEEPPLDLSSPVLEPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADW 696

Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
           P  E      S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ + 
Sbjct: 697 PDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES 756

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            + I +YKT+   P+ +E +P+ + AQL++Y ++L+  YP + +   L++   P +  +P
Sbjct: 757 RVLIVDYKTNRPPPKTLEAVPFAYRAQLALYRELLRPLYPRRVVEAALLFTEGPFLLPVP 816

Query: 937 QNKLNKAFAEISTK 950
              L+ A   +   
Sbjct: 817 DTVLDDAMGALKDT 830


>gi|254509530|ref|ZP_05121597.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium
            KLH11]
 gi|221533241|gb|EEE36229.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium
            KLH11]
          Length = 1119

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 236/958 (24%), Positives = 394/958 (41%), Gaps = 68/958 (7%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L  RF L      E +   ++P     V  I+  +   +E+G     K AQ L   ++  
Sbjct: 208  LLRRFDLPEGFDEEALLHSVFPGGE--VELIDSMLPALIESGGNNA-KAAQKLGSFTKAG 264

Query: 61   CIEERFSLLSSFFLTQKFTPQ------KNIITQEINK-KSPDLKEKLKKSQDEFIKIRDR 113
                   +L S  LT K   +       +  T+ + +    D   +L+         R++
Sbjct: 265  L--RILPVLESVLLTGKSAKEPFTAKIGSFPTKALREGALADRMPQLEALMLRVEAAREQ 322

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                   + T      A      YE  K+    LDF+DLI+    +L    V+ W+ Y++
Sbjct: 323  RLALVAAQKTHVLHRFAAAFLPEYERRKQMRGWLDFDDLILRARQVLNDPAVAEWVLYRL 382

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGA 232
            D  I+HIL+DE QDTS  QW+VI  L ++F  G+   S   RT+F VGD+KQSIYSF GA
Sbjct: 383  DGGIDHILVDEAQDTSPDQWDVIEKLAQEFTSGEGARSGVERTIFVVGDKKQSIYSFQGA 442

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P+   + +    ++   +G K     L  SFRS++ IL++VD +F        +     
Sbjct: 443  DPQAFDQMQAEFGRKLQESGSKLWDFTLEYSFRSSSAILSLVDILFEN-----RIEAGFH 497

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                HR+ +    G V LW  V    +   +     WT   D         ILA ++A +
Sbjct: 498  KDALHRAFKADLPGRVDLWPVV----EKVEDEVDGDWTDPVDRPGARHHTVILAEQVAKS 553

Query: 353  ISNMIGTDTIFSNGK-------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            I  MI  +T   +         +R +Q  D L+LV++R D  L   + R  K++  + + 
Sbjct: 554  IRAMIDGETTIPDDGEAPGAFVRRKVQPGDFLILVQRRSD--LFAEIIRACKSE-GLPIA 610

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
            G DR  +   LA+KDL AL  F+ + ED LS   +LKS LF +SE  +F +  +R E   
Sbjct: 611  GADRLKVGAELAVKDLAALLSFLATPEDSLSLATVLKSSLFGWSEQQLFDLAHRRKE--- 667

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
               ++         +F   +  +++L     F  P+D    IL    GRQ+ + R G E 
Sbjct: 668  --AFLWAALRSRGEEFPETLAVLNDLRGQTDFLRPYDLIERILTRHGGRQKLLGRLGAEA 725

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             D ++  L+  L  E+    SL   +  ++     IKR  S   N +R+MTVH +KGLE+
Sbjct: 726  EDGINALLSQALAYERTDIPSLTGFLVWMQTDDLEIKRQMSGVGNMIRVMTVHGSKGLEA 785

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            P+V L DTG +               +      P+W   S +   +VS   +  +   + 
Sbjct: 786  PIVILPDTGKRQPPRD--------AEIMMAGETPLWKLPSDASPALVSSAREEARTREEN 837

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E  RLLYV +TRA   LI+    +   +      +WY +V  +                 
Sbjct: 838  ERLRLLYVALTRAEKWLIVAAAGDVGKDG----SSWYQLVEAAMERAGAAP--------- 884

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                        H     L      +    +Q +P     P      +   L+PS +   
Sbjct: 885  --IPGPQIRRLAHGNWDALPLAAQQQTAHSKQDLPAYFHQPAPEAPAQAETLSPSDLGGA 942

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                 E+   +     RG  +H LL+ +  + + +                   E   LL
Sbjct: 943  KALPGEAGRDEEAVKQRGTRMHLLLEHLPAVTQDQWPQLCDRLLA----DMQDTERSELL 998

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
               T +L    +    +  + +EV+VS   +       + G ID++ IS   + + ++K+
Sbjct: 999  DEATAVLTAGHLKHIFTPAALTEVAVSADFH----GTRLHGVIDRLIISGDEVQVIDFKS 1054

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            +  VP   E  P   + Q+  Y   +   YP+  +   +++    ++  +P + + +A
Sbjct: 1055 NTTVPDGPETCPDGLLRQMGAYAHAMAQIYPDHQIRTAILWTRTAQLMWLPHDLVTEA 1112


>gi|75674249|ref|YP_316670.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255]
 gi|74419119|gb|ABA03318.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter
            winogradskyi Nb-255]
          Length = 1202

 Score =  573 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 273/989 (27%), Positives = 440/989 (44%), Gaps = 57/989 (5%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            +  G+   E  E + +++   P    S      +L + TG+   +K+A+ L+ A      
Sbjct: 228  DALGVDPAERVEDVEREIVDGPNLPRSKWLDTAAL-IATGSSNDVKQAERLRAAHAEAGD 286

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
              R       FLT   +P+K+ +T++I+   PD+ E L       I +  R     +   
Sbjct: 287  AARADRYLDVFLTGDGSPRKSFVTRKISDARPDVAEMLADECQRVIALLGRRRAINIRDR 346

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            T + L +A  + AHY   K +  +LD++DLI  T  +L++     W+ YK+D+ ++H+LI
Sbjct: 347  TQSLLVIAAAVAAHYRREKHERGLLDYDDLIDKTLRMLEQ-TSPGWVHYKLDRGVDHVLI 405

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            DE QDTS  QW+++  +  DF  G+       RT+FAVGDEKQSI+SF GA P+     +
Sbjct: 406  DEAQDTSPKQWDIVERIIADFTTGEGAREGVRRTVFAVGDEKQSIFSFQGAAPREFDERR 465

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            R  +++ T+A   F   +   SFRS   IL  VD VF  P     +       + H S  
Sbjct: 466  RKLERKFTDAKLPFRKEDFIYSFRSGKTILESVDHVFRDPAIYASIHAVGAHPV-HESLA 524

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V LW       +     + E W + FD++   S    LARRI   I ++I    
Sbjct: 525  DAAPGIVDLWSL----EERDKREEMEGWRAPFDAVTATSPEVKLARRIRDEIKSLIAQGA 580

Query: 362  IFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +  + G +R +   DILVLVR+R +      + + LK    I V G DR  LT+H+AI D
Sbjct: 581  MTGHLGNRRPLGYGDILVLVRRRGNA--FDAVIQALK-QSGIPVAGADRLKLTEHIAIID 637

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            LM L   +L   DDL+    LKSPLF   +DD+FK+  QR  T          A     K
Sbjct: 638  LMNLADALLLPRDDLALAVALKSPLFGLDDDDLFKLAWQRKGTLRDALAGHATA---DDK 694

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            F+   + +      A   +P  FF  +LG + GR++ + R G+E  D LDEFL   L  E
Sbjct: 695  FRDAFESLKRCESRAARDTPFAFFAWLLGEEAGRRRILRRLGHEANDALDEFLELALTCE 754

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            + + +SLQ  ++ L      +KR    + +EVR+MTVH AKGLE+ VVFL DT +     
Sbjct: 755  RKAPASLQGFMAWLRAADTEVKRDMEISRDEVRVMTVHGAKGLEASVVFLADTSTSPADT 814

Query: 601  KHIKKMHIMPSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            + +  + +          G+ IW  +       V+     +   T+ EY RLLYV MTRA
Sbjct: 815  ERLSLIRMGRGNAPAGVAGVTIWAGRKAEDPPCVAQARAAMTAETEHEYRRLLYVAMTRA 874

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH- 717
            +D+LI+      +N K   + +WY ++     N     +   T S     +   +     
Sbjct: 875  ADRLIVGG-CKPANRKDVREFSWYHLIEKGLANSGLAMQEIETASGKVKRFTRPDHDDPG 933

Query: 718  ---------------------------------HPENTPLEREETIKQLMDEQKIPKKLF 744
                                               E                  +P  L 
Sbjct: 934  SNRSRIMNVIDSNILERDAGGKPLHTFPHPALEEAEPDAAGPAPPASPGATRIPLPPWLH 993

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLES---LLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                 +      L PS  D        +       ++   RG ++H+LLQ +  +P  +R
Sbjct: 994  LAAAPEAPARRSLYPSDADEAAHQRAPAGAIPDQRHRARLRGTLVHRLLQSLPEVPRDRR 1053

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
            +    SY  +NA  W   E+  L   +  +L++       +  S +EV++ G++   + D
Sbjct: 1054 REAALSYLGRNASGWGKTEHDALAARVVAVLDDARFAPVFAEGSRAEVAIVGRLTTRRGD 1113

Query: 862  II-ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
             + +SG+ID++ ++   + + +YKT    P  +  +P  +I QL++Y  +L   YP   +
Sbjct: 1114 PLPVSGQIDRLVVTPHGVLVVDYKTS-PAPASLADVPPAYIRQLALYRAMLAGLYPELPV 1172

Query: 921  VCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
               L++   P++  I  + L+ A   I +
Sbjct: 1173 NAALLWTETPEMMEISASTLDAALEAIIS 1201


>gi|114762246|ref|ZP_01441714.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Pelagibaca
            bermudensis HTCC2601]
 gi|114545270|gb|EAU48273.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp.
            HTCC2601]
          Length = 1125

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 249/958 (25%), Positives = 390/958 (40%), Gaps = 56/958 (5%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            GLS ++S E +   ++        ++ + V+ ++        K    LQ A  T    + 
Sbjct: 211  GLSPDDSEEALLASVFLGGEI---ELLREVATALAGSGKNDQKAG--LQLARITAPDLDA 265

Query: 66   FSLLSSFFLTQKFTPQ------KNIITQEINK-KSPDLKEKLKKSQDEFIKIRDRFNTYK 118
              +L    LT K   +       +  T+ +       L  +L+       + R       
Sbjct: 266  LQILEGVLLTGKAAKEPFTAKIGSFPTKGLRTGALEPLMNRLEDLMRRVEQARQTRLALG 325

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                 LA    A+     YE  K++   LDF+DL+I   DLL    V+ W+ Y++D  I+
Sbjct: 326  AVGRELALHRFAQAFLPAYETEKQRRGWLDFDDLVIRARDLLSDERVAEWVLYRLDGGID 385

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL+DE QDTS +QW+VI  L  +F  G+   +   RT+F VGD+KQSIYSF GA+P+  
Sbjct: 386  HILVDEAQDTSPVQWQVIERLAHEFTSGEGARADVRRTIFVVGDKKQSIYSFQGADPREF 445

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
             R      +R        S + L  SFRS   IL +VD  F   E A       +   +H
Sbjct: 446  DRMCDEFAERLQRTEAPLSRMMLEYSFRSAEPILRLVDNTFDRREAAGF-----SQDQKH 500

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            R+ +    G V LW  V    D   + ++  W    D + Q   A ILA RIA  I   I
Sbjct: 501  RAFKSEMPGRVDLWPHVEPTKD---DEEEADWYEPVDRIGQRHHAVILANRIAGFIDRTI 557

Query: 358  GTDTIFSNGK-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            GT      G       R   A D L+LVR R    L + + R  K  + + + G DR  +
Sbjct: 558  GTPLPEEIGHSGSYKTRPAHAGDFLILVRGR--GTLFSEIIRACK-QHNLPIAGADRLKV 614

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
               LA+KD+ AL  F+ + EDDLS    L+SPLF  ++  +F +   R        Y+  
Sbjct: 615  MSELAVKDIGALLAFLATPEDDLSLATALRSPLFGLTQQQLFTLAQGRK------GYLWA 668

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                       V+  + +L     F  P+D    IL    GR++ + R G E  D ++  
Sbjct: 669  ELRRNRDAVPRVMSVLDDLRSETDFLRPYDLIERILTRHDGRKRLLGRLGEEAEDGINAL 728

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            L   L  EQ    SL   +  L+     IKRA  +  + +R+MTVH AKGLE+P+V L D
Sbjct: 729  LAQALAYEQTEVPSLTGFLEWLQTDDLEIKRAPDSAGSRIRVMTVHGAKGLEAPIVILPD 788

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                           I  SL +     +W   +  +  + +  +   K++ Q E +RLLY
Sbjct: 789  CAE--------PNSQIRDSLLEGETGTVWKASADRQPQVQAQALAEAKEADQRERDRLLY 840

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V +TRA   L++        +  S    WYD V                           
Sbjct: 841  VALTRAEKWLVVAAA----GKLGSQGNAWYDQVRIGMERSGAEP--TEFGFGGWGSGEGL 894

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                    + P ER E   ++  E  +P     P          ++PS +        E 
Sbjct: 895  TLGRADWSDLPHERVEETPRI--EVDLPDVFRHPAAVPEAVAEAVSPSGLGGPKALGGED 952

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                 +   RG  +H LL+ +  LP   R + +        +L   +E   L      +L
Sbjct: 953  GDDTEEAMLRGTALHLLLEHLSALPPAARPDAVPHVLAIVEEL--PEETDRLAEEAIAVL 1010

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
            E P +    +  S +EV +S  I        I G ID++ ++   +   ++K++  VP  
Sbjct: 1011 ETPELGPFFAPGSLAEVPISASIEPVG---RIHGIIDRLLVTPDKVIAVDFKSNRTVPAT 1067

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
               +P   + Q+  Y   L   +P + +   LI+ +      +P + ++ A A  +T 
Sbjct: 1068 PAEVPEGLLRQMGAYAAALAQIWPGREVETALIWTATQSYMALPHDLVSAALARATTA 1125


>gi|254476353|ref|ZP_05089739.1| double-strand break repair helicase AddA [Ruegeria sp. R11]
 gi|214030596|gb|EEB71431.1| double-strand break repair helicase AddA [Ruegeria sp. R11]
          Length = 1125

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 232/961 (24%), Positives = 397/961 (41%), Gaps = 67/961 (6%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FGL  +     + + ++       +D+       +  G     K A+ L Q  +  
Sbjct: 213  LLRLFGLPADFDRTALEQLVFLGGE---ADLLARTRAMLLQGGANDGKAAEKLSQIKEPT 269

Query: 61   CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
              +    +L S FLT     +          T+++ + + +L ++L+         R   
Sbjct: 270  LAD--LPVLESVFLTGASAKEPFTAKINGFPTKKLREANVELMDQLEPLMRRVEAARALR 327

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  + +      A      YE  K+    LDF+DLI+    LL    V+AW+ Y++D
Sbjct: 328  LALVAVEKSEILHRFAAAFLPEYERRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRLD 387

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233
              I+HIL+DE QDTS +QW+V+  L ++F  G+   S   RT+F VGD+KQSIYSF GA+
Sbjct: 388  GGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARSEVERTIFVVGDKKQSIYSFQGAD 447

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P    R +     R    G       L  SFRS+A +L +VD VF   E A         
Sbjct: 448  PDAFDRMQAEFSTRLDETGAGLQNAALEFSFRSSAAVLRLVDLVFKDSEAAGF-----HK 502

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               HR+ +    G V LW  V          ++  WT   D         ILA RIA +I
Sbjct: 503  DALHRAFKAELPGRVDLWPVVEKVDT----EEERDWTDPVDRPGARHHTVILAERIAASI 558

Query: 354  SNMIG-------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +MI              + ++R +Q  D L+LV++R +  L + + R  K    + + G
Sbjct: 559  KDMIDTKVTIPEDGPERGSFRRRPVQPGDFLILVQRRSE--LFSEIIRACKAAR-LPIAG 615

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             DR  +   LA+KDL A+  F+ + ED LS    LKSPLF ++E  +F +  +R     +
Sbjct: 616  ADRLKVGAELAVKDLAAVLSFLSTPEDSLSLAAALKSPLFGWTEQMLFDLAHRRDGGSHL 675

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            ++ ++  A     +F   +  + +L     F  P+D    IL    GRQ+ + R G E  
Sbjct: 676  WKALRDRA----DEFPDTMAILDDLRGQTDFLRPYDLIERILTRHGGRQRLLGRLGPEAE 731

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D ++  L+  L  E++   SL   +  ++     IKR   A  N +R+M+VH +KGLE+P
Sbjct: 732  DGINALLSQALAYERSDIPSLTGFLVWMQTDDLEIKRQMGAAGNMIRVMSVHGSKGLEAP 791

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L DT  +               +    G P+W   S     ++     H +   + E
Sbjct: 792  IVILPDTAKRRPPRD--------EEIMRAEGGPVWKLPSAQMPQVMQAARDHAQDKQRNE 843

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV +TRA   LI+      S +  S  +     + ++   D           +  
Sbjct: 844  RLRLLYVALTRAEKWLIVASAGELSKDGDSWYQMVERALQEAGAQDYDTGHGTGL-RLQH 902

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +W    + +  P                  ++P          +     L+PS +    
Sbjct: 903  GDWDGLPFHSEPPVEVVT------------PELPDVFLKQPPAYVAPVATLSPSDLGGAK 950

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE-HKRKNFITSYCTKNAKLWPAKEYKNLL 825
                +    +     RG  +H LL+ +  + +         +    +      +E  NL+
Sbjct: 951  ALPGDLGQDEEAAKARGTRLHLLLEHLPQIADRTTWPEIARNLLAGH------EETDNLV 1004

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
               T +L  P ++   + D+ +EV++S  +N       + G ID++ I+ + +   ++K+
Sbjct: 1005 AEATAVLTAPELSDIFAGDTLAEVAISADLN----GARLHGVIDRLIITNETVRAIDFKS 1060

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            +  VP   +  P   + Q+  Y   L   YP+  +   L++     +  +P + ++ A  
Sbjct: 1061 NATVPASPQKCPEGLLRQMGAYAHALAQLYPDHRIETGLLWTRTASLMWLPHDLVSSALE 1120

Query: 946  E 946
             
Sbjct: 1121 R 1121


>gi|319403513|emb|CBI77092.1| ATP-dependent nuclease subunit A [Bartonella rochalimae ATCC
            BAA-1498]
          Length = 1152

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 291/964 (30%), Positives = 488/964 (50%), Gaps = 48/964 (4%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  F L+ +++ + +   +  +       I  Y         P      +   Q + +  
Sbjct: 219  RAFFNLAPDDTNQRLLDKIQQIAALPSYAIKYY----QTHSTPKNKDIIEKFLQLATSSD 274

Query: 62   IEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                 +L+S+ +  +   P+    + +++ ++  P ++++++  Q++   + D++   K+
Sbjct: 275  ETNIINLVSNIYFEKSGKPRDFSRLFSKKSDEVWPFIEKEIEDKQNQLPLLLDKYQCVKL 334

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                +A+  L       Y + KK N +LDF+DLI  T  LL+ +  S W++YK+D+ I+H
Sbjct: 335  VTLNIAAFQLCDIYLKIYTDLKKANNLLDFDDLIERTLYLLQHKGASQWVQYKLDRGIDH 394

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            IL+DE QDT+  QW++I+ L ++FF G +  ++ RT+FAVGDEKQSIYSF GA  +    
Sbjct: 395  ILLDEAQDTNPKQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVLENFAE 454

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              RI QK+     QKF  I+L  SFRSTAD+L  VD VF  PEN +GLS +   T+ H  
Sbjct: 455  NGRIIQKKVKQVEQKFEKIQLNYSFRSTADVLKSVDLVFESPENYKGLSAEHVKTV-HEP 513

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             R+   G V +W+ +  +     N   + W S  D L  ++    LA +IA TIS+ +  
Sbjct: 514  IRVHSPGDVIIWDAISKK----TNEFPDDWLSTVDHL--DTPQICLAEKIAETISSWLKN 567

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              +    K R+++A DI+VLVRKR     +  L+R LK  + + V G DR  LT H++++
Sbjct: 568  GEMLPAKK-RLLRAGDIMVLVRKRDQ--FVPALSRALKLRH-VPVAGADRLQLTTHISVR 623

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            DLMAL RF+L  +DDLS  C+LKSPLF+ SE++++++      T +++E +   ++    
Sbjct: 624  DLMALARFVLQPQDDLSLACVLKSPLFSLSENELYQL--AVQRTGSLWESLSTHSSSHAV 681

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
             F+ + + ++    +       +F++ IL   KGRQ+ I+R G E  +VLD F++ TL  
Sbjct: 682  -FKIIFERLNTYRTLVDKMPVFEFYSYILNNDKGRQKIIARLGTEANEVLDAFIDHTLTI 740

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++     LQ  +  L    P IKR    N  EVRIMTVH AKGLE  VVFLVD GS ++ 
Sbjct: 741  QKTGLPGLQAFLEILSINEPEIKRELDQNCEEVRIMTVHAAKGLEGAVVFLVDPGSAIWH 800

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             ++            D  + IW P ++        ++  LK+  +EEY RLLYVGMTRA 
Sbjct: 801  PQYAPHFLKC--SLGDKQVFIWRPNAQHHTKHFDKVLSRLKERAEEEYKRLLYVGMTRAE 858

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            D+LIIC ++N     K    TW  +V  +        K         ++  A+ +     
Sbjct: 859  DRLIICGYTNQ----KETPNTWLQLVKKALKPHAVPIK------GPAEDITAWRYCITSS 908

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-- 777
               P+ +E + +       +P    + +  ++     L PS +             +   
Sbjct: 909  CPAPMYQEISCETHQIFPPLPAFFHNKVPTELTLSKPLRPSVVGINDTKTEFFPQKERFS 968

Query: 778  -------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                          +   G  IH+LLQ +   P  KR+++   Y    A  W   + +  
Sbjct: 969  ISPVLGEKNTKKTFSIEYGNFIHQLLQHLPNYPPTKRQDYAQFYLNTKASHWHKTQREKA 1028

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
            L  I  +L+NP +    S  S++EV++ G +    K+ ++SG+ID++ I+  ++F  ++K
Sbjct: 1029 LHHIWTILDNPDLEPFFSNLSHAEVALMGIVKINGKEQMVSGQIDRLCITHNSVFFADFK 1088

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T    P+    I   H+ Q+++Y+K+L+  YP+K++  LLIY+ + K+F +   KL+   
Sbjct: 1089 TG-LSPENDTDIKKHHLLQMALYQKLLQTIYPDKNMHALLIYIKKAKIFKLLPEKLDALL 1147

Query: 945  AEIS 948
             EI 
Sbjct: 1148 DEII 1151


>gi|259418122|ref|ZP_05742041.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B]
 gi|259347028|gb|EEW58842.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B]
          Length = 1121

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 241/961 (25%), Positives = 408/961 (42%), Gaps = 73/961 (7%)

Query: 2    KNRFG----LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57
            +N  G    L      E +  +++       +DI       ++TG  T  K A+ L + S
Sbjct: 204  RNALGEVFELPAGYDLEALRSEVFLGNE---ADILSRTIEMLKTGGATDAKNAEKLARIS 260

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
                  E   +L   FLT K   +       +  T+++ +    L ++L+         R
Sbjct: 261  SVTP--EVLPILEDVFLTGKSAKEPFSAKIGSFPTKKLRESHGTLMDQLEPFMARVETAR 318

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
             R         +L     A+     YE  K+    LDF+DLI+   +LL    V+AW+ Y
Sbjct: 319  PRRLALDAMDKSLVLHDFARVFLPEYERRKQLRGWLDFDDLIVKARNLLNDPAVAAWVLY 378

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFH 230
            ++D  I+HIL+DE QDTS +QW+V+  L ++F  G+   +   RT+F VGD+KQSIYSF 
Sbjct: 379  RLDGGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARADVERTIFVVGDKKQSIYSFQ 438

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+P    R +    +R    G+      L  SFRS+A IL +VD VF   + A      
Sbjct: 439  GADPDAFDRMQAEFGRRLEETGEGLQNASLAFSFRSSAAILGLVDVVFDGQDRAGF---- 494

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                 +H++ +    G V LW  V    +   + +   WT   D       + ILA RIA
Sbjct: 495  -ARDAKHQAFKSDLPGRVDLWPLV----EKTEDEEDRDWTDPVDRPSPRHHSVILAERIA 549

Query: 351  YTISNMIGTDTIFSNG-------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              I  MI +              ++R + A D L+LV++R D  L + + R  K    + 
Sbjct: 550  GQIKEMIDSGVTIPEDGPERGTFQRRPVHAGDFLILVQRRSD--LFSEIIRACKA-TGLP 606

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
            + G DR  +   LA+KD+ AL RF+   ED LS    LKSP+F +SE  +F +  +R E 
Sbjct: 607  IAGADRLKVGAELAVKDIAALLRFLALPEDSLSLAEALKSPIFGWSEQQLFDLAHRRTE- 665

Query: 464  ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                 ++          F   +  + +L   A F  P+D    IL    GR + + R G 
Sbjct: 666  ----MHLWPALRARSEAFPETMAILDDLRGQADFLRPYDLIERILTRHLGRAKLLGRLGT 721

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            E  D ++  L+  L  E+    SL   +  ++     IKR   A  + +R+M+VH +KGL
Sbjct: 722  EAEDGINALLSQALAYERTEVPSLTGFLVWMQTDDLEIKRQMGAASSMIRVMSVHGSKGL 781

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E+P+V L DT          ++    P + +  G P+W   S      +       ++  
Sbjct: 782  EAPIVILPDTTK--------RRPSPAPEVMEVEGTPLWRMSSDQMPPAMDAARAFAQEKQ 833

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
              E  RLLYV +TRA   LI+    +          +WY  V  +    + +        
Sbjct: 834  ANERLRLLYVALTRAEKWLIVAGAGDLDKGGD----SWYQRVEAALKTMDALP--FDAPG 887

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-TI 762
             +   W   +W+      + L  EE I        +P          +     L PS  +
Sbjct: 888  GDGLRWAHGDWNAPPFVPSDLTEEEEI-------TLPDVFRHAAPAYVAPTATLRPSEDL 940

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                    +S LS+ +   RG  +H LL+ +  +P+    +                +++
Sbjct: 941  GGVKALPGDSGLSEEEAKARGTALHLLLEHLPNVPQADWDSRAEHIAQH-------DDWQ 993

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
             LL+   ++L +P      + ++ +EV ++  +     D  + G ID++ ++   +   +
Sbjct: 994  VLLIEARQVLSSPECKEIFAPNTLAEVPITADL----GDTRMHGIIDRLVVTPDRVLAVD 1049

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            +K++  VPQ  E  P   + Q+  Y+  L+  YP++ +   +++     +  +P   + +
Sbjct: 1050 FKSNAVVPQSPETCPEGLLRQMGAYDAALRQIYPDRQIETAILWTRTATLMSLPVTLITQ 1109

Query: 943  A 943
            A
Sbjct: 1110 A 1110


>gi|83942010|ref|ZP_00954472.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
            sp. EE-36]
 gi|83847830|gb|EAP85705.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
            sp. EE-36]
          Length = 1125

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/959 (23%), Positives = 393/959 (40%), Gaps = 68/959 (7%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
              F    + + E I   ++      +  + + +      G     K A+ L  A+     
Sbjct: 211  ALFDQPADLTEEKITTSVFLGSEAMI--LEQMIPPMRAKGGL-DGKAAEKL--ATIQTMD 265

Query: 63   EERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                 +L    LT     +        + T+   K   DL  ++          RD    
Sbjct: 266  ISALPVLEDVMLTGAGAKEPFTAKVGTLPTKPTQKLLFDLMPQVDDLMRRVEDARDARLA 325

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +  + T      A      Y   K+K   LDF+DLI+    LL    V+AW+ Y+ID  
Sbjct: 326  LRAAQKTHVLHQFAHRFLEIYAHEKQKRGWLDFDDLILKARALLTNPAVAAWVLYRIDGG 385

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPK 235
            I+HIL+DE QDTS  QW+VI  L ++F+ G        RTLF VGD+KQSIYSF GA+P+
Sbjct: 386  IDHILVDEAQDTSPRQWDVIERLADEFYSGDGAREEEDRTLFVVGDKKQSIYSFQGADPR 445

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                ++ + +++ + AGQ F    L  SFRS++ IL +VD   +   +A           
Sbjct: 446  EFDHKQDLFEQKISQAGQIFQRRSLEYSFRSSSAILHLVDTTLAPHTDAGF-----QADA 500

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H++ +    G V LW  V    +    P    W+   D         +LA ++A  I  
Sbjct: 501  AHKAFKSALPGRVDLWPVVEKTDE----PDDREWSDPVDQKSAHHHTVVLADQVASQIKE 556

Query: 356  MIGTDTIFSNGK-------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +I  +              +R I+A D L+LV++R D  L + + R  K    + + G D
Sbjct: 557  LIEGEHYLPVDTDTPGAFARRRIRAGDFLILVQRRSD--LFSEIIRACKT-AGVPIAGAD 613

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            R  +   LA+KDL AL  F+ + ED LS    LKSPLF ++E  +F +   R E   +++
Sbjct: 614  RLKVGAELAVKDLAALLSFLATPEDSLSLATALKSPLFGWTEQMLFTLSHYRKED-HLWQ 672

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
             ++         +   +  + +L     F  P+D    IL    GR++ ++R G+E  D 
Sbjct: 673  ALRS-----SDAYPETVAILRDLRAQVDFLRPYDLIERILTRHDGRRKLLARLGSEAEDG 727

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            ++  L+  L  E+ +  SL   +  ++     IKR      ++VR+MTVH AKGLE+P+V
Sbjct: 728  INAMLSQALSYERGAIPSLTGFLVWMQTDDLEIKRQIDNASDQVRVMTVHGAKGLEAPIV 787

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
             L DTG +         + I   +      P+W          +   +   K     E  
Sbjct: 788  ILPDTGKRP--------LVIRDEIIKIGDTPVWKLSEGDMPAAMRGALDDRKAREMAERL 839

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            RLLYV MTRA   LI+        E   +  +WY MV  +                    
Sbjct: 840  RLLYVAMTRAEKWLIVAAA----GELPKDGNSWYQMVGAAMGQAGAKPV----------- 884

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
              +      H +   L   ++  +     ++     + +         L PS +      
Sbjct: 885  GSSGGMRFEHGDWDALPVIDSAPKTHTTPELDPVFNTALTVIPLRAKTLAPSDLGGAKAL 944

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
              +   S++   + G ++HK+L+ +  +   +    + +     A+ +     +  L   
Sbjct: 945  PGDDGQSEDAAKSYGNLVHKMLETLPMMHSDRWNGVLHTL----AQGYDETVAQAALREA 1000

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
              +L+ P +      D+ +EV ++  +        + G ID++ +S  ++ + +YKT+  
Sbjct: 1001 IAVLDTPELAHVFGKDALAEVPITAPL----GPKRLHGTIDRLLVSDTDVLLVDYKTNRV 1056

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
            VP   +  P   + Q+  Y   L   +P+  +   +++     +  +P   +  A + +
Sbjct: 1057 VPDTPDRCPEGLLRQMGAYAAALAQVFPDHRIRTAILWTRTATLMELPDALITNALSRV 1115


>gi|319406427|emb|CBI80067.1| ATP-dependent nuclease subunit A [Bartonella sp. 1-1C]
          Length = 1152

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 293/964 (30%), Positives = 486/964 (50%), Gaps = 48/964 (4%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  F L+ N++ + +   +  +       I  Y         P      +   Q + +  
Sbjct: 219  RTFFNLAPNDTNQQLLDKIQQIAALPSYAIKYY----QTHSTPKNKDIIEKFLQLATSSD 274

Query: 62   IEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                 +L+S+ +  +   P+    + +++ ++  P ++++++  Q++   + D++   K+
Sbjct: 275  ETNIINLVSNIYFEKSGKPRDFSRLFSKKSDEIWPFIEKEIEDKQNQLPLLLDKYQCVKL 334

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                +A+  L       Y + KK N +LDF+DLI  T  LL+ +  S W++YK+D+ I+H
Sbjct: 335  VTLNIAAFQLCDIYLKIYTDLKKANNLLDFDDLIERTLYLLQHKGASQWVQYKLDRGIDH 394

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            IL+DE QDT+  QW++I+ L ++FF G +  ++ RT+FAVGDEKQSIYSF GA  +    
Sbjct: 395  ILLDEAQDTNPKQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVLENFAE 454

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              RI QK+     QKF  I+L  SFRSTAD+L  VD VF  PEN +GLS +   T+ H  
Sbjct: 455  NGRIIQKKVKQVEQKFEKIQLNYSFRSTADVLKSVDLVFESPENYKGLSAEQAKTV-HEP 513

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             RI   G V +W+ +  +     N   + W S  D L  ++    LA +IA TISN +  
Sbjct: 514  IRIHSPGDVIIWDAISKK----TNEFPDDWLSTVDHL--DTPQIRLAEKIAETISNWLKN 567

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              +    K+R+++A DI+VLVRKR     +  L+R LK  + + V G DR  LT H++++
Sbjct: 568  GEMLP-AKQRLLRAGDIMVLVRKRDQ--FVPALSRALKLRH-VPVAGADRLQLTTHISVR 623

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            DLMAL RF+L  +DDLS  C+LKSPLF+ SED+++++      T +++E +   ++    
Sbjct: 624  DLMALARFVLQPQDDLSLACVLKSPLFSLSEDELYQL--AVQRTGSLWESLSIHSSSHTV 681

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
             F+ +   ++    +       +F++ IL   KGRQ+ I+R G E  +VLD F++ TL  
Sbjct: 682  -FKIIFDRLNTYRTLVDKMPVFEFYSYILNNDKGRQKIIARLGTEANEVLDAFIDHTLTI 740

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++     LQ  +  L    P IKR    N  EVRIMTVH AKGLE  +VFLVD GS ++ 
Sbjct: 741  QKTGLPGLQAFLEILSINEPEIKRELDQNCEEVRIMTVHAAKGLEGAIVFLVDPGSAIWH 800

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             ++            D    IW P ++        ++  LK+  +EEY RLLYVGMTRA 
Sbjct: 801  PQYAPHFLKC--SLGDKQAFIWRPNAQHHTKHFDKVLSRLKERAEEEYKRLLYVGMTRAE 858

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            D+LIIC ++N     +    TW  +V  +        K         ++  A+ +     
Sbjct: 859  DRLIICGYTNQ----RETPNTWLQLVKKALKPHAVPIK------GPAEDITAWRYCITPS 908

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-- 777
               P+ +E + +       +P    + +  +      L PS +             +   
Sbjct: 909  CPAPMYQEISCETHQIFPPLPAFFHNKVPTESTLSKPLKPSVVGINDTKTKFFPQKERFS 968

Query: 778  -------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                          +   G  IH+LLQ +   P  KR+++   Y    A  W   + +  
Sbjct: 969  ISPVLGEKNTKKTFSIEYGNFIHQLLQHLPNYPPTKRQDYAQFYLNTKASHWHKTQREKA 1028

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
            L  I  +L+NP +    S  S++EV++ G +    K+ ++SG+ID++ I+  ++F  ++K
Sbjct: 1029 LHHIWTILDNPDLKPFFSNLSHAEVALMGIVKINGKEQMVSGQIDRLCITHNSVFFADFK 1088

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            T    P+    I   H+ Q+++Y+K+L+  YP+K++  LLIY+ + K+F +   KL+   
Sbjct: 1089 TG-LSPENDTDIKQHHLLQMALYQKLLQTIYPDKNMHALLIYIKKAKIFKLLPEKLDALL 1147

Query: 945  AEIS 948
             EI 
Sbjct: 1148 DEII 1151


>gi|254465049|ref|ZP_05078460.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
            Y4I]
 gi|206685957|gb|EDZ46439.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
            Y4I]
          Length = 1117

 Score =  568 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 240/960 (25%), Positives = 395/960 (41%), Gaps = 67/960 (6%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FGL        +   ++        ++ +     ++ G  T  K A  L  A  T+
Sbjct: 207  LLELFGLPEGFDETALEALVFLGGE---EELLQRAREMLKQGGSTDQKAAAQL--AGITK 261

Query: 61   CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                  + L S FLT     +          T+++ +    L ++L+         R + 
Sbjct: 262  PALADLTTLESVFLTGASAKEPFTAKIDKFPTKKLREAHLSLMDQLEPLMRRVEDARAKR 321

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  + +      A      YE  K+    LDF+DLI+    LL    V+AW+ Y++D
Sbjct: 322  LALTAARKSHDLHRFAAAFLPEYERRKQLRGWLDFDDLILKARQLLNDPGVAAWVLYRLD 381

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233
              I+HIL+DE QDTS +QW+VI  L ++F  G+   S   RT+F VGD+KQSIYSF GA+
Sbjct: 382  GGIDHILVDEAQDTSPVQWDVIEKLAQEFTAGEGARSDVERTIFVVGDKKQSIYSFQGAD 441

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P    R ++    R    G       L  SFRS+A IL +VD VF     A         
Sbjct: 442  PDAFDRMQQEFGNRLAETGAGLQDASLDFSFRSSAAILKLVDLVFRDSPRAGF-----RK 496

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H++ +    G V LW  V    D +       WTS  D         ILA RIA +I
Sbjct: 497  DALHQAFKSDLPGRVDLWPVVGKVEDDEDP----DWTSPVDRPSSRHHTVILAERIARSI 552

Query: 354  SNMI-------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              MI                ++R +QA D L+LV++R D  L + + R  K   ++ + G
Sbjct: 553  KQMIYTGATIPEDGPERGTFQRRPVQAGDFLILVQRRSD--LFSEIIRACK-KAELPIAG 609

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             DR  +   LA+KD+ AL RF+   ED LS    LKSPLF ++E  +F +   R E   +
Sbjct: 610  ADRLKVGAELAVKDIAALLRFLALPEDSLSLAEALKSPLFGWTEQALFDL-AHRREAMYL 668

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            +  ++  A    ++F   +  +++L   A F  P+D    IL    GRQ+ + R G E  
Sbjct: 669  WPALRGRA----AEFPETMAVLNDLRANADFLRPYDLIERILTRHGGRQKLLGRLGPEAE 724

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D ++  L+  L  E+    SL   +  ++     IKR   A  N +R+M+VH +KGLE+P
Sbjct: 725  DGINALLSQALAYERTDVPSLTGFLVWMQTDDLEIKRQMGAAGNMIRVMSVHGSKGLEAP 784

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L DT  +               +    G P+W          +    +  ++  Q E
Sbjct: 785  IVILPDTAKRQPPRD--------AEIMLADGTPVWKLPKDQMPPAMLAAREAAQEKLQNE 836

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV +TRA   LI+        +      +WY +   +  +    +   +      
Sbjct: 837  RLRLLYVALTRAEKWLIVASAGEVGEQGD----SWYRLTERAMRDGGATEFDTVGG---- 888

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                         +  PL   E I+    + ++P+    P +        L+PS +    
Sbjct: 889  ---TGLRLQHGDWDGLPLVLPEAIE--AAKHELPEVFTRPARAYAAPAPALSPSDLGGAK 943

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                +  L +     RG  +H LL+ +    +        +            +   LL 
Sbjct: 944  ALPGDQGLDEEAAKARGSRLHLLLEHLPGRADADWPQLAQNLLQGAG------DCAELLA 997

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
              + +L N  +      D+ +EV ++  +N       + G ID++ I+ +++   ++K++
Sbjct: 998  EASAVLRNAALADVFHPDTLAEVPITADLN----GARLHGIIDRLIITPESVLAVDFKSN 1053

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              VP   E  P   + Q+  Y   L   YP +++   L++     +  +P + +  A   
Sbjct: 1054 ATVPAAPEQCPEGLLRQMGAYAHALALIYPGRTIGTALLWTRTATLMPLPHDLVTAALKR 1113


>gi|118593731|ref|ZP_01551100.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614]
 gi|118433641|gb|EAV40304.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614]
          Length = 1178

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 292/960 (30%), Positives = 456/960 (47%), Gaps = 44/960 (4%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF- 66
                      +         ++    Y   ++ TG  T   +A  L  A++       F 
Sbjct: 240  DPALRLADFDEQFRTACPLDLNTCLAYAE-ALRTGTKTDQARADDLVAAARFTGSAAAFR 298

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                + FLT K  P+K++ T+++ +  P++ E L+  Q   + + D+      ++ T + 
Sbjct: 299  EAWQAIFLTAKLEPRKSLATKKVAEAFPEMLEALEAEQQRLLALLDQRRKVATYEGTSSL 358

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            L LA  +  HYE AK     LDFEDL++ T  LL+K D + W++YK+DQ ++HIL+DE Q
Sbjct: 359  LRLADAVIGHYERAKTARGYLDFEDLVVKTATLLQKSDAALWVQYKLDQGLDHILVDEAQ 418

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DTS  QWEV+ SL  +FF G       RTLFAVGDEKQSIYSF GA P      +R    
Sbjct: 419  DTSPRQWEVVTSLASEFFAGTGARDRVRTLFAVGDEKQSIYSFQGAVPAYFDAMRRAFSG 478

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
            +A  A  +F  + L LSFRST D+L  VDKVF      +GLS+D    + H + R    G
Sbjct: 479  KAEAAELEFHSVNLQLSFRSTPDVLGAVDKVFHDESAHKGLSQDVKAPV-HEAIRRD-PG 536

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             V LW             + + W    D +   S    +ARRIA  I+  +   T     
Sbjct: 537  IVDLWPL----EAEAEIEEPDDWRQPIDHVGSGSPMLKVARRIAAEIAQWMRDGT----- 587

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    D+++LVRKR               +  I   G+DR +LTDH+A++DL ALGR
Sbjct: 588  ----ADPGDVMILVRKRG---PFVEALNRELKELDIPAAGSDRLVLTDHIAVQDLAALGR 640

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC--GISKFQHV 484
            F+L  EDDLS  C+LKSPLF+ ++DD+ ++  +  E        Q          K++ V
Sbjct: 641  FLLLPEDDLSLACVLKSPLFDLTDDDLLEVARETPEKVRPGTLWQMLVKRSDTSDKWKAV 700

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
               + +    A F  P++F+  +LGA  GR+ F +R G EV DVLDEFL  T+  EQ+  
Sbjct: 701  RAKLEDWRARADFVPPYEFYARLLGADGGRKAFRARLGVEVDDVLDEFLALTIAYEQSGT 760

Query: 545  SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
              L+  ++ +   P  IKR  +     VRIMTVH +KGLE+ +V LVD G+   S  H  
Sbjct: 761  PGLEGFLAWMAAAPTEIKRELTNTKGMVRIMTVHGSKGLEARIVILVDPGAAPVSAIHDP 820

Query: 605  KMHIMPSLNDD--PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                   L +D  P   +W+P    R       ++ L+ + +EEY RLLYV +TRA D+L
Sbjct: 821  AFLPRRRLENDLLPPALVWLPPKADRTPWHDAAVEALRDAQEEEYRRLLYVALTRAEDRL 880

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            I+C       ++ +++  WY MV  +   +    +    +      W   +  T      
Sbjct: 881  IVCGW---EPKRGAHENCWYSMVSRALKPEA---RELTASDGAVSAWRWQKEGTAAGPEA 934

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----DTKGKTNLESLLSDN 777
                  + +   +E  +P  L +P++        L PS       + +G   + ++    
Sbjct: 935  GGAAHVSAEPGSEEPPLPDWLSTPVRPLPK-KKRLQPSRAFEAMEEKEGIDPVPAVSRLQ 993

Query: 778  QTF-------NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                       RG +IH+LL+++  + E +R     +Y  +  K   A    +LL  +  
Sbjct: 994  AGRDLASWPLERGRLIHRLLELLPDIAEGERLAASEAYLRQALKPEFADRSSHLLREVAA 1053

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHV 889
            +L+ P   T     + +EV + G I      ++ ISG+ID++ +    + I +YKT+ H 
Sbjct: 1054 ILDMPEFETLFCGHARAEVPLVGTIRASDGTEVEISGQIDRLVVEDNRVVIVDYKTNFHP 1113

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
            P  +  IP  + AQL +Y ++LK  YP + +   L++ + P +  IP+  L + FA +  
Sbjct: 1114 PASVAEIPLEYRAQLCVYREMLKQIYPGREISAQLLWTAVPSLMEIPEKVLEETFAGLRP 1173


>gi|149912864|ref|ZP_01901398.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            AzwK-3b]
 gi|149813270|gb|EDM73096.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            AzwK-3b]
          Length = 1123

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 245/957 (25%), Positives = 399/957 (41%), Gaps = 55/957 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G   N + + I   ++         +   +  ++        K A  L+ AS  +
Sbjct: 207  LAQALGQPGNLTLDDITARVFLGSEQD---LLNQLIPALRASGTNDQKAA--LRLASIDR 261

Query: 61   CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                   +L S FL      +       +  T+        +  ++ +      + RD  
Sbjct: 262  LDASALPVLDSVFLFGDSAKEPFSAKIGSFPTKAGRAPIDAIMPQIDQWMARVEEARDAR 321

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  + T      A+     Y+ AK     LDF+DLI+    LL    V+AW+ +++D
Sbjct: 322  LALATIQKTRTLHEFARVFLTAYDRAKALRGWLDFDDLILRARQLLTDPAVAAWVLFRLD 381

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233
              I+HIL+DE QDTS +QW+VI  L ++F  G+   +   RT+F VGD+KQSIYSF GA+
Sbjct: 382  GGIDHILVDEAQDTSPVQWQVIERLAQEFTSGQGARADVTRTIFVVGDKKQSIYSFQGAD 441

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P    R K     R    GQ    +E+  SFRS++ IL +VD  F+   ++       T 
Sbjct: 442  PDEFDRMKGDFATRLHATGQPLQDMEMEYSFRSSSAILDLVDHTFANSRDSGF-----TP 496

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H++ +    G V LW  +      +       W    D       A++LAR+IA TI
Sbjct: 497  EQGHKAFKSDLPGRVDLWPVIEKPDQDEDPE----WHMPVDVKAANDPATLLARQIALTI 552

Query: 354  SNMIGTDTIFSNGKK----RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              M+       +       R I+  DIL+LV++R  + L   L R  K    + + G DR
Sbjct: 553  RRMVDDKQPIPDKASPSGLRPIRPGDILILVQRR--STLFHELIRECKTQ-NLPIAGADR 609

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +   LA+KDL AL  F+ + EDDLS    L+SPLF +SE  +F    +R +   ++  
Sbjct: 610  LKVGAELAVKDLAALLSFLATPEDDLSLATALRSPLFGWSEAQLFDRAHKRTQR-YLWAA 668

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            ++  A    S F   +  + +L   A +  P+D    IL    GR++ ++R G E  D +
Sbjct: 669  LRDRA----SDFPETMAVLDDLRRKADYLRPYDLIERILTRHDGRRKLLARLGAEAEDGI 724

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            D  L   +  EQ +  SL   +  +E     IKR   +  N VR+MTVH AKGLE+PVV 
Sbjct: 725  DALLMQAMAYEQRAVDSLTGFLVWMETDDLEIKRQMDSAGNRVRVMTVHGAKGLEAPVVI 784

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L DT          + + I   +    G P W   S      +       + + + E +R
Sbjct: 785  LPDTAK--------RDIRIRDQITTSNGTPFWRSASGEAPAAIVRASDAARDAQRAERDR 836

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV MTRA   LI+    +     ++        +  +              +   D  
Sbjct: 837  LLYVAMTRAETWLIVAAAGDLGKNGEAWYEKVQAGLQAA-------------GATAHDFD 883

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
            +       H +      +           +P     P    +  P  L PS +       
Sbjct: 884  LGQGLRLQHGDWAGTVSDPPADATHSTTPLPAHFQQPAPPPVLPPETLKPSDLGGDKALP 943

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
             E  L ++    RG  IH+LL+ + T+P+        +  +  +     +E + LL    
Sbjct: 944  DERGLDEDAAKRRGRQIHRLLEFLPTVPQSDWPETAGTLLSNGSDAAEGEELRLLLAEAE 1003

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
            ++L  P +      D+  EV VS  ++       I G ID++ IS   +   ++KT+  V
Sbjct: 1004 KVLTKPSLQFLFQPDALCEVPVSASLDA-LGGRRIHGIIDRLLISPDRVLAVDFKTNAGV 1062

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
            P   EH+P   + Q+  Y   L   YP++ +   L++     + ++P + + KA  +
Sbjct: 1063 PDTAEHVPTALLRQMGAYANALALIYPDRPVETGLLWTRNATLTLLPHDLVTKALRD 1119


>gi|328545810|ref|YP_004305919.1| Double-strand break repair helicase AddA [Polymorphum gilvum
            SL003B-26A1]
 gi|326415550|gb|ADZ72613.1| Double-strand break repair helicase AddA [Polymorphum gilvum
            SL003B-26A1]
          Length = 1165

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 288/964 (29%), Positives = 464/964 (48%), Gaps = 47/964 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G++  E+   +   +       +      V+ ++  G  T   KA  L  A  T 
Sbjct: 225  LAGDLGVAPGETGAAVDARMRDETLIPLDT-ATSVAEALRRGTKTDCDKADRLVAAGATT 283

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              +         FL Q  T  K+++T+ I ++ PD+ + + + Q   + + +R       
Sbjct: 284  DPQAWCETWLGVFLKQDLTAPKSLVTKRIAEEFPDVLDLMLREQARLLALVERRRAAVTL 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + T A L LA  + A YE  K +  +LDFEDL++ T +LL   + + W++YK+DQ ++HI
Sbjct: 344  EGTAAILRLADAVIADYEAVKARRGLLDFEDLVVRTANLLSVSEAAQWVQYKLDQGLDHI 403

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QDTS  QWEV+++L E+FF G+   +  RT+FAVGDEKQSIYSF GA P      
Sbjct: 404  LVDEAQDTSPRQWEVVKALAEEFFAGEGARTRARTIFAVGDEKQSIYSFQGAVPAYFDEM 463

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +R  ++RA  A + F  +EL LSFRST D+L  VD VF  PE  +GLS+ +   + H + 
Sbjct: 464  RRYFERRAREAARDFHPVELQLSFRSTPDVLGAVDLVFQQPEVHKGLSQVARAPV-HEAI 522

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            R    G V++W   +     + +     WT+  D + + +    LARRIA T+   I   
Sbjct: 523  RRE-PGLVEIWPLELPDKTVEPD----DWTAPIDRIGEGNPMLRLARRIAETLRIWIDEG 577

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            T           A D+LVLVRKR                  I   G+DR +LTDH+A+KD
Sbjct: 578  T---------ADAGDVLVLVRKRG---AFVEALNRELKRLDIPAAGSDRLVLTDHIAVKD 625

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---QRHETETVYEYIQKFANCG 477
            L+ALGRFIL  EDDLS  C+LKSPLF   +D + +I      R    T+++ + + +   
Sbjct: 626  LIALGRFILLPEDDLSLACVLKSPLFGLDDDALLEIARDPVDRLRAGTLWQSLLRKS-ET 684

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             +++  V K +      A F  P +F+  +L A  GR++F +R G EV DVLDEFL   +
Sbjct: 685  ETRWLSVRKALETCRSRADFMPPFEFYARLLAADDGRRKFRARLGAEVDDVLDEFLALAM 744

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              EQ     L+  ++ LE  P  IKR  +     VRIMTVH +KGLE+P+V LVD GS  
Sbjct: 745  SYEQTGTPGLEGFLAWLEAAPTQIKRELTNAGGLVRIMTVHGSKGLEAPIVILVDPGSAP 804

Query: 598  FSHKHIKKMHIMPSLND--DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
               +H   +   P   D   P   +W+P    R    ++ +  ++++ +EEY RLLYV M
Sbjct: 805  AVARHDPALLERPRGTDPMVPPALVWLPTKADRTGWHAEAVDAVREAAEEEYRRLLYVAM 864

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA D+L++C     +  + +++  W+ +V  +        K            + + W 
Sbjct: 865  TRAEDRLLVCGW---APSRGAHEACWHSLVAAALVPQAEEIKDA------AGRTVCWRWQ 915

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                E  P  + E         + P  L  P+      P +      +   +      ++
Sbjct: 916  KAGAEPPPRVKAEAAPAAEPPAR-PDWLVRPVPPAPQVPRLQPSRAFEAMEQKEGIEPVA 974

Query: 776  DNQ-----------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG ++H+LL+ +  LP  +R      +         A+    L
Sbjct: 975  GRTALEAIRQPAGWALERGRLMHRLLETLPDLPAAERAAAAVRFVEAALPQRFAQHRDAL 1034

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII-ISGRIDQISISQQNIFIFEY 883
            L    R+L         +    +EV++ G +  P    + +SG+ID++      + I +Y
Sbjct: 1035 LDEAERILAGADFAPLFAARGRAEVAIVGTLTGPDGRQVAVSGQIDRLVEEPGRVLIVDY 1094

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            KT+   P  +E +P  ++AQL++Y ++++D +P   +   L++ + P +  +P + L+ A
Sbjct: 1095 KTNARPPALLEGVPEEYLAQLAVYRRLVQDIFPGLPVEAALLWTAAPSLMPLPGDLLDAA 1154

Query: 944  FAEI 947
            F+ +
Sbjct: 1155 FSRL 1158


>gi|21328716|gb|AAM48722.1| helicase, UvrD/Rep family [uncultured marine proteobacterium]
          Length = 1118

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 221/957 (23%), Positives = 398/957 (41%), Gaps = 62/957 (6%)

Query: 1    LKNRFGLSLNESYELIYKD-LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
            +    GL        + ++   P  +  + ++   +    E  N    K  + LQ  S  
Sbjct: 207  IWKALGLPAGYDDASLAQECFLPGDFQHIEELKTLLMTKDE--NSNDFKAGRRLQAISGP 264

Query: 60   QCIEERFSLLSSFFLTQKFT-----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            +        L S FL +          ++  T+    + P + + ++         R   
Sbjct: 265  ELTTADLPTLESVFLNKTGKAPGSAKIRSFPTKATRAELPGMAQ-VEALMLRVEAGRQSR 323

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             +  + + +LA    A      Y   K+    LDF DLI+ T  LL    V+ W+ +++D
Sbjct: 324  LSLNVARRSLALYDFAAEFLGTYRARKQARGFLDFNDLIMRTRHLLSDERVATWVLFRLD 383

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233
              I+HIL+DE QDTS  QW+VIR L ++F  G+   +  PRT+F VGD+KQSIYSF GA+
Sbjct: 384  GGIDHILVDEAQDTSPAQWDVIRLLAQEFTSGEGARADVPRTIFVVGDKKQSIYSFQGAD 443

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P    R +    ++     Q F    L  SFRS++ IL VVD+VF+        S     
Sbjct: 444  PDGFDRMRDQFSQKLHEIDQPFQSTTLDYSFRSSSAILGVVDQVFANRSGLGSGSA---- 499

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H + +    G V +W    +   +    +   W    D +  +     LA  +A  I
Sbjct: 500  ---HLAFKADLPGRVDVWPVFQAPDKT----EPHQWMDPVDEVSTDHQDKQLADALAGHI 552

Query: 354  SNMIGTDTI-----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
             ++I T+T+          +R I A D L+LV+ R    L   + R  K +  + + G D
Sbjct: 553  CDLIETETLTQLDATGAAFQRKITAGDFLILVQGR-QKLLFREIHRACK-EAGLPIAGAD 610

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            R  +   LA++D+ +L  F+   ED+LS    LKSPLF +SE ++F +   R        
Sbjct: 611  RLKVAAELAVRDIRSLLAFLALPEDNLSLAEALKSPLFGWSEQELFDLAQGRDSP----- 665

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
            ++ +       +F + ++ + EL  +A F  P +    IL    GR   + + G E  + 
Sbjct: 666  FLWRSLQNREEEFPNTVQRLTELRDLADFKRPFELIEHILTTYGGRSALLGQLGPEAAEG 725

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            +D  ++ +L  E+++  +L   +  L+     IKR   +  +++R+MTVH AKGLE+P+V
Sbjct: 726  IDALVSQSLAYERSNIPNLTGFLVWLDADDLEIKRQMDSVGDKIRVMTVHGAKGLEAPIV 785

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
             L DT  +            +P +     I +W P        +   +K  ++  +EE +
Sbjct: 786  ILPDTAPRKAPK--------LPEVVPHNTIAVWSPNKDLIPAALQSSLKDKQRQQEEERD 837

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            RLLYV MTRA   LI+    +    K+               ++     I    +   + 
Sbjct: 838  RLLYVAMTRAESWLIVMGSGDIKEGKE-------------CWHNAIQDAISALGAAPLNT 884

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                       + +   + + ++  + +Q +P       K         +PS +      
Sbjct: 885  VAGLGLRYEPMQWSAGPQSDPVQPQVMKQSVPSWAIPYTKPAQAPAAPRSPSDLGGDKVL 944

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
               +          G  +H+LL+V+   P+ +  +        + +              
Sbjct: 945  PGGAPQDAENAKRLGTAVHRLLEVLPNAPQDQWGHIAQRLVEADIQ-------AAAFQEA 997

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
              +L+ P +    + +S +EV +S  +     D  I G ID++ IS   +   ++K++  
Sbjct: 998  RAVLQKPELAYIFAPESLAEVDISAHLPELNGD-PIQGSIDRLLISPTRVLAVDFKSNQI 1056

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            VP E+  +P   + Q+  Y   L   YP+  +   +++    ++  +P + +  + A
Sbjct: 1057 VPSEVAQVPSGLLRQMGAYAAALSQIYPHHDIETAILWTKTLELMPLPPDLVILSLA 1113


>gi|254453452|ref|ZP_05066889.1| double-strand break repair helicase AddA [Octadecabacter antarcticus
            238]
 gi|198267858|gb|EDY92128.1| double-strand break repair helicase AddA [Octadecabacter antarcticus
            238]
          Length = 1128

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 235/964 (24%), Positives = 416/964 (43%), Gaps = 58/964 (6%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   F +  + +   +   +  +    +  I + + + + +G     K A  L+      
Sbjct: 207  LAQTFDIPSSLTLSGLIDAI--VGPDDLDAIQRLIPICLASGT-NDQKAAIKLKAIDLNT 263

Query: 61   CIE-ERFSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
              +    +++   FL  K           +  T+ I   +PDL ++L          RD 
Sbjct: 264  PPDMAVLAVMEDVFLFGKDAKNPYGAKIDSFPTKAIRTANPDLIDELNDLMQRVEDGRDT 323

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
               +   + + A +  A      YE  K +   LDF+DLI     LL+   V+ W+ +++
Sbjct: 324  RWCWLALEKSRALIAFATPFVRGYETKKVQRAALDFDDLISKAKALLEDPAVAQWVLFRL 383

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGA 232
            D  ++H+L+DE QDT+  QW+++R LT++F  G   +    RT+F VGD+KQSIYSF GA
Sbjct: 384  DGGVDHVLVDEAQDTAPDQWDIVRLLTQEFSTGIGANPDRERTVFVVGDKKQSIYSFQGA 443

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P+   R             +    +EL  SFRS+A +L +VD+ F        ++E   
Sbjct: 444  DPEGFDRMSDHFSGELNKVQKSLHKLELLYSFRSSAAVLQLVDQTFK-----GEMAEGLG 498

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              I H + +    G V +W  +         P++  W    D   + +   +LA +IA  
Sbjct: 499  NHIEHIAFKDTMPGRVDVWPVIEPSEK----PEERDWDDPVDFKGRTNHKVVLATQIATE 554

Query: 353  ISNMIGTDTIFSN------GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            I  MI  +T+           +R I   D+L+LV+ R D  L + +    K    + + G
Sbjct: 555  IKRMIAHETLPVKVADDTGWSRRKITPGDVLILVQGRSD--LFSEIIVACK-KAGLDIAG 611

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             DR  L   LA+KD+ AL +F+  Q+DDLS    LKSPLF ++E  ++ +   R + +T+
Sbjct: 612  ADRLKLGGELAVKDISALLQFLALQDDDLSLAAALKSPLFGWTEKQLYDLAQPRKKQQTL 671

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            +E ++          +  +  +H+L + A F  P+D    +L    GR+  I+R G+E  
Sbjct: 672  WEALRTSGTH-----EDTLAIVHDLRNRADFLRPYDLINRLLIRHSGRRNLIARLGHEAE 726

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D +D  L+  L  EQ++  SL   ++ L+     +KR   +  + +R+MTVH AKGLE+P
Sbjct: 727  DGIDALLSQALGYEQSAVPSLTGFLTWLQTEDVVVKRQMDSAGDRIRVMTVHGAKGLEAP 786

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L DT          +K  +   L    G   W P+S     ++ D+   +  +   E
Sbjct: 787  IVILPDTTK--------RKREVRGDLLTTGGYVYWKPKSDVMPQVMRDIQDDMLDAQDRE 838

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV +TRA + LII    +     K  Q +W+  V ++  + + V+      +I +
Sbjct: 839  RRRLLYVALTRAENWLIIAAAGDVG---KEPQDSWHGTVSNALDHLDAVEHPAPFGTIKR 895

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                 ++               T  +    + +       + N ++ P  L+PS +    
Sbjct: 896  FSRWEWDAG----------PMATPAKEPAAKTVMPLFGDTLPNLLDRPKTLSPSDLGGAK 945

Query: 767  KTNLES-LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                E+   + +     G IIH LL+V+       R          +           L+
Sbjct: 946  IMASETYTDASDLALAWGHIIHLLLEVLPETDPMMRLGTAEGLAKNHPDAGLIPNIGELI 1005

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                  L+   ++        +EV +S  +     D +  G ID++ I+  ++   ++K+
Sbjct: 1006 EEALGTLDASNLSWIFEAG-LAEVPISATLPSLGLDRMF-GIIDRLIITDTDVIAVDFKS 1063

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            +  VP+  E  P     Q++ Y   LK  YPN  +  +L++        +P   L+ A  
Sbjct: 1064 NRVVPEIPEKTPLGLARQMAAYRDALKQIYPNHRIRTVLLWTKTGTTTELPDAMLDVALF 1123

Query: 946  EIST 949
             ++T
Sbjct: 1124 GVTT 1127


>gi|83953059|ref|ZP_00961781.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
            sp. NAS-14.1]
 gi|83842027|gb|EAP81195.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter
            sp. NAS-14.1]
          Length = 1125

 Score =  566 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 228/959 (23%), Positives = 394/959 (41%), Gaps = 68/959 (7%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
              F    + + + I   ++      +  + + +      G     K A+ L  A+     
Sbjct: 211  ALFDQPADLTEDKITTSVFLGSEAMI--LEQMIPPMRAKGGL-DGKAAEKL--ATIQTMD 265

Query: 63   EERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                 +L    LT     +       ++ T+   K   DL  ++          RD    
Sbjct: 266  ISALPVLEDVMLTGAGAKEPFTAKVGSLPTKPTQKLLFDLMPQVDDLMRRVEDARDARLA 325

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +  + T      A      Y   K+K   LDF+DLI+    LL    V+AW+ Y+ID  
Sbjct: 326  LRAAQKTHVLHQFAHRFLEIYAHEKQKRGWLDFDDLILKARALLTNPAVAAWVLYRIDGG 385

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPK 235
            I+HIL+DE QDTS  QW+VI  L ++F+ G        RTLF VGD+KQSIYSF GA+P+
Sbjct: 386  IDHILVDEAQDTSPRQWDVIERLADEFYSGDGAREEEDRTLFVVGDKKQSIYSFQGADPR 445

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                ++ + +++ T AGQ F    L  SFRS++ IL +VD   +   +A           
Sbjct: 446  EFDHKQDLFEQKITQAGQIFQRRSLEYSFRSSSAILQLVDTTLAPHTDAGF-----QADA 500

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H++ +    G V LW  V    +    P    W+   D         +LA ++A  I  
Sbjct: 501  AHKAFKSALPGRVDLWPVVEKTDE----PDDREWSDPVDQKSAHHHTVVLADQVASQIKE 556

Query: 356  MIGTDTIFSNGK-------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +I  +              +R I+A D L+LV++R D  L + + R  K    + + G D
Sbjct: 557  LIEGEHYLPVDTDTPGAFARRRIRAGDFLILVQRRSD--LFSEIIRACKT-ADVPIAGAD 613

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            R  +   LA+KDL AL  F+ + ED LS    LKSPLF ++E  +F +   R E   +++
Sbjct: 614  RLKVGAELAVKDLAALLSFLATPEDSLSLATALKSPLFGWTEQMLFTLSHYRKED-HLWQ 672

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
             ++         +   +  + +L     F  P+D    IL    GR++ ++R G+E  D 
Sbjct: 673  ALRS-----SDAYPETVAILRDLRAQVDFLRPYDLIERILTRHDGRRKLLARLGSEAEDG 727

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            ++  L+  L  E+ +  SL   +  ++     IKR      ++VR+MTVH AKGLE+P+V
Sbjct: 728  INAMLSQALSYERGAIPSLTGFLVWMQTDDLEIKRQIDNASDQVRVMTVHGAKGLEAPIV 787

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
             L DTG +         + I   +      P+W          +   +   K     E  
Sbjct: 788  ILPDTGKRP--------LVIRDEIIKIGDTPVWKLSEGDMPAAMRGALDDRKAREMAERL 839

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            RLLYV MTRA   LI+        E   +  +WY MV  +                    
Sbjct: 840  RLLYVAMTRAEKWLIVAAA----GELPKDGNSWYQMVGAAMGQAGAKPV----------- 884

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
              +      H +   L   +T  +      +     +P+ N       L PS +      
Sbjct: 885  GSSGGMRFEHGDWDALPVIDTAPKTHTTPVLEPVFNTPLTNIPLRAKTLAPSDLGGAKAL 944

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
              +   S++   + G ++HK+L+ +  +   +    + +     A+ +     +  L   
Sbjct: 945  PGDDGQSEDAAKSYGNLVHKMLETLPMMHSDRWNGVLHTL----AQGYDETVAQAALREA 1000

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
              +L+   +      D+ +EV ++  +        + G ID++ +S  ++ + +YKT+  
Sbjct: 1001 IAVLDTSELAHVFGKDALAEVPITAPLGTE----RLHGTIDRLLVSDTDVLLVDYKTNRV 1056

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
            VP   +  P   + Q+  Y   L   +P+  +   +++     +  +P   +  A + +
Sbjct: 1057 VPDTPDRCPEGLLRQMGAYAAALAQVFPDHRIRTAILWTRTATLMELPDALITNALSRV 1115


>gi|299133347|ref|ZP_07026542.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2]
 gi|298593484|gb|EFI53684.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2]
          Length = 1163

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 258/956 (26%), Positives = 435/956 (45%), Gaps = 33/956 (3%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
               G++ +   + I +++   P+            + E G  +   +     +A+     
Sbjct: 228  RALGVTSDAQLDAIEREMVDGPHLPRRRWLAAAE-AFEQGGKSDATQGAR-LRAAAALSG 285

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            E +     S F+T +   +K ++T+ +      L   L + Q   +++ ++         
Sbjct: 286  EAQLDEYLSLFITGEGGARKTLMTKALAATQGALAAALMQEQPRLLQLDEQRRAVIQRDR 345

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            T A L +A  + AHY   K+   +LD++DLI  T+ +L     ++W+ +K+D+ I+H+LI
Sbjct: 346  THALLVIASAVAAHYRREKQARGLLDYDDLIDKTHTMLTG-GYASWVHFKLDRGIDHVLI 404

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDTS  QW++I S   +F  G       RT+FAVGDEKQSI+SF GA P+     +R
Sbjct: 405  DEAQDTSPRQWDIIESFVSEFTAGAGARDIRRTVFAVGDEKQSIFSFQGAAPREFDLRRR 464

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                R  +A   F  +    SFRS A IL  VD VF      + +  D    + H +   
Sbjct: 465  AMMTRHAHAKLAFESVSFKHSFRSGAAILDSVDYVFREQAIYKSIHNDDAYPV-HDALPD 523

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V+LW       +     + E W + FD++   S    LARR+   I  +I   T+
Sbjct: 524  AAPAMVELWNL----EEPDTREEIEGWDAPFDTISTTSPDVKLARRVTAEIKALIDAGTM 579

Query: 363  FSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                G +R ++  D++VLVR+R  T     + + LK    I V G DR  LT+H+A+ DL
Sbjct: 580  TGTTGHRRKLRYGDVMVLVRRRGTT--FDAVIQALK-HAGIPVAGADRLKLTEHIAVIDL 636

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            M L   +L  +DDL+    LKSPLF   +DD+  I   R  T ++   +Q  A   + K 
Sbjct: 637  MHLADALLLPQDDLALAVALKSPLFGLDDDDLLAIAPAR--TGSLRAALQAHA-DTLPKL 693

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKG----RQQFISRFGNEVIDVLDEFLNFTL 537
            + V  ++ +        +P  FF  +LG + G    R + + R G E  D LDEFL   L
Sbjct: 694  KSVNDFLMQCEKRFARVTPFAFFAWLLGGEGGGSGGRARILRRLGPEANDALDEFLELAL 753

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              E+ + +SLQ  I+ L      +KR      +EVR+MTVH AKGLE+ VVFLVDT +  
Sbjct: 754  SYERKAAASLQGFIAWLRAADTEVKRDMEILRDEVRVMTVHGAKGLEASVVFLVDTTTSP 813

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
               + +K + +         + +W    +     V+     ++  T+ EY RLLYV MTR
Sbjct: 814  SDTQRLKLIRMAHGNAGPGDVVLWAGAKRDDTEAVAQARAAMRDDTEHEYRRLLYVAMTR 873

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A+++LI+       N     + +WYD++      D+ +    L  +  +  +      T 
Sbjct: 874  AAERLIVGG-CKPGNRNNVRELSWYDLI------DKGLGASPLVMTEIETPFGPVRRYTR 926

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-- 775
              +  P   E+   +      +P  L +    +I     + PS           +  +  
Sbjct: 927  AGDVEPKVAEDVAAKPAAPAPLPDWLRASAPLEIPRERSIAPSDASDDVSLPTLAPEAAL 986

Query: 776  -DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA-KLWPAKEYKNLLLSITRLLE 833
               +   RG  +H+LLQ +  +   +RK     +  ++A   +   +   L   +  L+ 
Sbjct: 987  LRQRARLRGQWVHRLLQSLPDIAPDQRKAAAERFLARHAQDGFNQDDLNQLAQQVVDLIG 1046

Query: 834  NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
             P      +  S +EVS++G+IN   K   +SG+ID++ I+  +I I +YKT    P   
Sbjct: 1047 EPQFAALFAPGSRAEVSIAGRINIGNKIARVSGQIDRLVITPHDIIIVDYKTG---PAPR 1103

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
               P  ++ QL++Y  +L   YP++++   L++    ++  +P   L+   A   +
Sbjct: 1104 AETPPHYVRQLALYRAVLAKLYPDRTIRGALLWTETARMVEVPSATLDSGLAAALS 1159


>gi|319404939|emb|CBI78541.1| ATP-dependent nuclease subunit A [Bartonella sp. AR 15-3]
          Length = 1151

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 301/950 (31%), Positives = 485/950 (51%), Gaps = 47/950 (4%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  F L+ +E+ + +   +          I  Y + +            +   Q +    
Sbjct: 219  RAFFNLAPDETNQQLLDKIQQTAALPSYAIKHYQTYNTSKNKH----IIEKFVQLATASD 274

Query: 62   IEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E   +L+S+ +  +   P+    + +++ ++  P ++++++  Q++ + + +++   K+
Sbjct: 275  EENIINLVSNIYFEKTGKPRNFSRLFSKKSDEIWPFVEKEIENKQNQLLILLEKYQCVKL 334

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                +A   L       Y + KK N  LDF+DLI  T +LL+ +D S W++YK+D+ I+H
Sbjct: 335  ITLNMAVFQLCDIYLKIYADLKKANSFLDFDDLIERTLNLLQHKDASQWVQYKLDRGIDH 394

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            IL+DE QDT+  QW++I+ L ++FF G +  ++ RT+FAVGDEKQSIYSF GA P+    
Sbjct: 395  ILLDEAQDTNPKQWQIIQLLAQEFFTGHSQRTNTRTVFAVGDEKQSIYSFQGAVPENFAE 454

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              R+ QK+A    QKF  I+L  SFRSTADIL  VD VF IPEN +GLS +   T+ H  
Sbjct: 455  NGRMFQKKAQQIEQKFEKIQLNYSFRSTADILKSVDLVFEIPENYKGLSAEHVKTV-HEP 513

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             R    G V +W+ +      + N   + W S  D L   +    LA +IA TI+N +  
Sbjct: 514  IRTHSPGDVIIWDAIS----QKTNELPDDWLSTVDHL--NTPQIRLAEKIAETIANWLKN 567

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              I S  K R+++A DI+VLVRKR     +  L+R LK  + + V G DR  LT H++++
Sbjct: 568  GEILSAKK-RLLRAGDIMVLVRKRDQ--FVPALSRALKLRH-VPVAGADRLQLTAHISVR 623

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            DLMAL RF+L  +DDLS  C+LKSPLF  SE++++++      T +++E +   A+    
Sbjct: 624  DLMALARFVLQPQDDLSLACVLKSPLFALSENELYQL--AAQRTGSLWESLWTHASSHT- 680

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
             F+ +   ++    +       +F++ IL   KGRQ+ ++R G E  +VLD F++ TL  
Sbjct: 681  SFKTIFDRLNTYRSLVDKMPVFEFYSYILNNDKGRQKILARLGTEANEVLDAFMDHTLAI 740

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++     LQ  +  L    P IKR    N  EVRIMTVH AKGLE  VVFLVD GS ++ 
Sbjct: 741  QKTGLPGLQAFLEILSINEPEIKRELDQNCEEVRIMTVHAAKGLEGAVVFLVDPGSAIWH 800

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             ++    + +     D    IW P ++        L+  LK+  +EEY RLLYVGMTRA 
Sbjct: 801  PQYAP--YFLKFSLGDKQAFIWRPNAQHHTKHFDKLLSRLKERAEEEYKRLLYVGMTRAE 858

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            D+LIIC +SN     K    TW  +V  +        K         ++  A+ +     
Sbjct: 859  DRLIICGYSNQ----KETPNTWLQLVKKALKPHAVPIK------GPAEDIAAWRYCITSS 908

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID--------------TK 765
             +TP  +E   +       +P      +  +      L PS  D              + 
Sbjct: 909  CSTPTYKEMPCETHQAFPPLPAFFHDKMPTESTLSKPLRPSVADIIDTKTKFSNNKHFSL 968

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                 E       +   G  IH+LLQ +  LP  KR ++   Y    A  W   + +N L
Sbjct: 969  SPVLGEKNTKRTFSIEYGNFIHQLLQHLPDLPPIKRHDYAQFYLNTKASHWHKSQRENAL 1028

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
              I  +L+NP +    S  S++EV++ G +    K+ ++SG+ID++ I+  ++F  ++KT
Sbjct: 1029 HHIWTILDNPQLIPLFSSLSHAEVALIGIVKINGKEQMVSGQIDRLCITHNSVFFADFKT 1088

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                P+    I   H+ Q+++Y+K+L+  YPNK++  LLIY+ + K+F +
Sbjct: 1089 G-LPPKNDTDIAQRHLLQMALYQKLLQAIYPNKNMQALLIYIKKAKIFKL 1137


>gi|304392405|ref|ZP_07374346.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130]
 gi|303295509|gb|EFL89868.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130]
          Length = 1195

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 278/979 (28%), Positives = 460/979 (46%), Gaps = 52/979 (5%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G +++E+   +         F + +     + + +TG    +K A  +     T   E  
Sbjct: 235  GFAVDETVTSLRNGAVAASLFAMEEWTALSAEARDTGAANAIKLADRIDLFLHTVEDERY 294

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             + L+      K     + + + +    PD   +    QD  I    +  T      T  
Sbjct: 295  DAYLAVLQTGGKPRKFSSFVPKAMQGLLPDFANRFDAEQDRLIAAAAQEATLSAIHRTAP 354

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             LT  + + A YE +K++   LDF+DLI    DLL + D  AW+ YK+D  I+H+L+DE 
Sbjct: 355  FLTFIQAIAARYERSKRQVGALDFDDLIARAADLLTRADARAWVLYKLDLGIDHVLVDEA 414

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDTS  QW+VI +L E+FF G+   ++ RT+FAVGDEKQSIYSF GA P+     +R+ +
Sbjct: 415  QDTSPRQWQVISALVEEFFAGQGARNTNRTVFAVGDEKQSIYSFQGARPESFDTHRRLFE 474

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
            + + NAG  F    L LSFRSTAD+L  VD VF +P+N  G+++   T   H ++R    
Sbjct: 475  RASKNAGGTFENANLNLSFRSTADVLDAVDAVFKVPQNMPGVTQGEGTI--HDAARSKGA 532

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
            G V +W  +     ++   + E WTS        +++  LA ++A TI + IG + +  N
Sbjct: 533  GQVDVWPLIS----AEKAEESEDWTSQ--QEATIAASEKLALQVAGTIKSWIGNEPLGPN 586

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            G  R +QA DILVLVR R                 ++ V G+DR  +TDH+A++DLMAL 
Sbjct: 587  G--RAMQAGDILVLVRSRD---AFVTALNRELKSLEVEVAGSDRLTITDHIAVEDLMALA 641

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FAN 475
            + +L+ +DDL+   +LKSPL    EDD++K+   R E   + +   +             
Sbjct: 642  QVMLTPQDDLALAGLLKSPLIGLDEDDLYKLARSRMEGAVMRDRSVREHNVSLFQGLRDQ 701

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                KF      I      A     ++FF LILGA  GR++F++R G EV DVLD F + 
Sbjct: 702  LDEPKFAAAWNTIKGWRRRADILPVYEFFALILGADGGRRKFMARLGPEVEDVLDAFASA 761

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            T+ +E      LQ  +  L    P IKR       +VRIMTVH AKG+E+PVVF+VD  S
Sbjct: 762  TMDHESRGLPGLQNFLERLSTEQPEIKRELDQRGEQVRIMTVHAAKGMEAPVVFVVDKSS 821

Query: 596  QVFSHKHIKKMHIMPSLNDDP---GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            +    +    ++            G  +W+P++       +   +      + EY RLLY
Sbjct: 822  KALPGQFYPALYRWGDQESADNRNGGWLWVPKTNQHGTATTPAFEREHTGAENEYRRLLY 881

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V MTRA D+LI+C     S   K  + +WY+M+             +   +         
Sbjct: 882  VAMTRAEDRLILCGTCGVSGPDKVPEPSWYNMLERGLEGTW-----RDVEAQGAVPQHHR 936

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
             +S    E       +T KQ++D   +P  +  P++   + P  L+PS            
Sbjct: 937  WYSHDRAEREGDNPAQTDKQVVDVTPLPATMLQPMERAKDLPKPLSPSGATALIDEGRTE 996

Query: 773  LL----------------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
                              S       G  +H++ ++   + ++ R         +     
Sbjct: 997  PRAVPSLLEPDAPSAAAYSSPSPRKLGTAVHRIFELWPVVAQNDRMPMGERILDQQLGNL 1056

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
                  N++  + +++E+P +        S +EV+V G ++       ++G ID++++++
Sbjct: 1057 DPAMSANIIYGVQQVVEDPRVADLFDPATSRAEVAVMGVLDIGGTQRSVTGTIDRMAVTE 1116

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS----EPK 931
              +++ ++KT  HVP +    P +++ QL++Y  I++  YP+KS+   LI+ +    E +
Sbjct: 1117 DAVYLLDFKTGEHVPADAAAAPASYVTQLALYRAIVQRLYPDKSVYATLIWTAAQDVERR 1176

Query: 932  VFIIPQNKLNKAFAEISTK 950
            +  +P   L++A AE+S +
Sbjct: 1177 IMTLPSAMLDEAMAELSQR 1195


>gi|99082686|ref|YP_614840.1| UvrD/REP helicase [Ruegeria sp. TM1040]
 gi|99038966|gb|ABF65578.1| ATP-dependent nuclease subunit A [Ruegeria sp. TM1040]
          Length = 1121

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 239/954 (25%), Positives = 407/954 (42%), Gaps = 69/954 (7%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
            F L        +  +++        +I       +++G  T  K A  L + +      +
Sbjct: 211  FDLPAGYDRSALQAEVFLGNE---EEILSRTIEMLKSGGATDTKNADKLARITAVTP--D 265

Query: 65   RFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               LL   FLT K           +  T+++ + +  L ++L+         R +     
Sbjct: 266  VLPLLEDVFLTGKSAKDPFSAKIGSFPTKKLRESNGVLMDQLEPFMARVEAARPKRLALD 325

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              + ++     A+     YE  K+    LDF+DLI+   +LL    V+AW+ Y++D  I+
Sbjct: 326  AMEKSIVLHDFARVFLPEYERRKQLRGWLDFDDLIVKARNLLNDPAVAAWVLYRLDGGID 385

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL+DE QDTS +QW+V+  L ++F  G+   +   RT+F VGD+KQSIYSF GA+P   
Sbjct: 386  HILVDEAQDTSPVQWDVVEKLAQEFTAGEGARADVERTIFVVGDKKQSIYSFQGADPDAF 445

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
             R +     R  + G+      L  SFRS+A IL +VD VF   E+  G ++D+    +H
Sbjct: 446  DRMQAEFGNRLKDTGEGLQNASLAFSFRSSAAILGLVDVVFD-GEHRAGFADDA----KH 500

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            ++ +    G V LW  V    +   + ++  WT   D       + ILA RIA  I  MI
Sbjct: 501  QAFKSDLPGRVDLWPLV----EKTDDEEERDWTDPVDRPSPRHHSVILAERIANHIKEMI 556

Query: 358  GTDTIFSNG-------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
                            ++R + A D L+LV++R D  L + + R  K    + + G DR 
Sbjct: 557  AQGVTIPEDGPERGTFQRRPVHAGDFLILVQRRSD--LFSEIIRACKA-AGLPIAGADRL 613

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             +   LA+KD+ AL RF+   ED LS    LKSP+F +SE  +F +  +R E      ++
Sbjct: 614  KVGAELAVKDIAALLRFLALPEDSLSLAEALKSPIFGWSEQQLFDLAHRRSE-----MHL 668

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                     +F   ++ +++L   A F  P+D    IL    GR + + R G E  D ++
Sbjct: 669  WPALRARSEEFPQTMEILNDLRRQADFLRPYDLIERILTRHLGRAKILGRLGTEAEDGIN 728

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              L+  L  E+    SL   +  ++     IKR   A  + +R+M+VH +KGLE+P+V L
Sbjct: 729  ALLSQALAYERTEVPSLTGFLVWMQTDDLEIKRQMGAASSMIRVMSVHGSKGLEAPIVIL 788

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
             DT          ++      + +  G P+W   S      +       ++    E  RL
Sbjct: 789  PDTTK--------RRPSPAAEVMEVDGTPLWRMSSDQMPPAMDAARVFAQEKQANERLRL 840

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV +TRA   LI+    +          +WY  V  +      +          +    
Sbjct: 841  LYVALTRAEKWLIVAGAGDLDKGGD----SWYQRVEAAMKTMGALPYDAPGGEGLRWAHG 896

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-TIDTKGKTN 769
             +E     P +   E         DE  +P+         +     L PS  +       
Sbjct: 897  DWEAPVFVPSDLTEE---------DEITLPEVFRRAAPAYVAPAATLRPSEDLGGAKALP 947

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
             +S LS+     RG  +H LL+ +  LPE    N   +           +++K LL    
Sbjct: 948  GDSGLSEEDAKARGTALHLLLEHLPKLPEEDWDNRAEAIAQH-------EDWKALLAEAR 1000

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
            ++L +       +  + +EV VS  +      + + G ID++ I+   +   ++K++  V
Sbjct: 1001 QVLCSDDCADIFAPGTLAEVPVSADL----GTVRLHGIIDRLVITPDRVLAVDFKSNAVV 1056

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            PQ  E  P   + Q+  Y+  L+  YP++ +   +++     +  +P   + +A
Sbjct: 1057 PQSAEACPEGLLRQMGAYDVALRQIYPDRQIETAILWTRTATLMSLPVTLITQA 1110


>gi|254463307|ref|ZP_05076723.1| double-strand break repair helicase AddA [Rhodobacterales bacterium
            HTCC2083]
 gi|206679896|gb|EDZ44383.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium
            HTCC2083]
          Length = 1122

 Score =  563 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/950 (25%), Positives = 395/950 (41%), Gaps = 55/950 (5%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
              + L    S E I   ++       +D+   +   + T + T +K A  L     T   
Sbjct: 210  AAYDLDPLMSEEQIAASVFMGGE---ADLLSALVNVLNTSSVTDVKMAAKLTTI--TALD 264

Query: 63   EERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                 +L   FL +K    K   I  + + K     ++ L          R         
Sbjct: 265  ASALPILEDAFLLKKDGSAKVGKIPAKGVQKDFVAYQDALDAWIFRVEAARGSRLKLAAV 324

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + TL     A      YE +K+    LDF+DLI+ T DLL   +++ W+ YK+D  I+HI
Sbjct: 325  QKTLHLNRFAAAFLTRYEASKQARGWLDFDDLILKTRDLLANSEMAQWVLYKLDGGIDHI 384

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            L+DE QDTS  QW+VI  LT +   G       PRT+F VGD+KQSIYSF GA+P+   R
Sbjct: 385  LVDEAQDTSPTQWDVIERLTSEITAGDGARGEVPRTIFVVGDKKQSIYSFQGADPREFDR 444

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +     R           EL  SFRS+  IL +VDKVF     A        +   H +
Sbjct: 445  MRSEFDVRLRPTNSPLVPAELHYSFRSSQCILELVDKVFEDHPTAG------FSGSNHLA 498

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG- 358
               G  G V +W  +              W+   D L +     ++A RIA  I+ M G 
Sbjct: 499  FEGGPPGRVDIWPAIPKAEKLDGG----DWSDTVDKLGENDETVLMAHRIADEIARMTGP 554

Query: 359  -TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
              + +F  G  R ++A D+L+LV++R D  L   + R  K    + + G DR  +   +A
Sbjct: 555  MGEALFDKGIFRKVRAGDVLILVQRRSD--LFEEIIRACKTK-GLPIAGADRLKVGAEMA 611

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            ++DL AL  F+ + EDD S   +LKSPLF +SE  +F +   R       E   +     
Sbjct: 612  VRDLQALLSFLATPEDDYSLAVVLKSPLFGWSEKRLFDLAHDRSGRFLWQELRSRKNMH- 670

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                  V+  + +L   A F  P+D    +L    GR+ F+ R G E  D +D  L   L
Sbjct: 671  ----SDVLHILEDLRKQADFLRPYDLIERVLTRHNGRRHFVGRLGREAEDGIDALLAQAL 726

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              E++   SL   ++ +E    TIKR  S + +E+R+MTVH AKGLE+P+V + +T  + 
Sbjct: 727  SFERSRIPSLTGFLTWMESDDLTIKRQLSQDRDEIRVMTVHGAKGLEAPIVIMPETQKRK 786

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                         SL     +  W  +++   +I+       ++   EE  RLLYV MTR
Sbjct: 787  SPGG--------GSLIKMDDLVGWSVRNEDAPDIIKTAKAQREERQAEERMRLLYVAMTR 838

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A   LI+    +          +WY +V  +      V+         + E + +     
Sbjct: 839  AEKWLILGAAGDLGKTDD---ESWYGLVSAAARERPHVEYDFAFGKGLRIEPVPWGDVEE 895

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
             P+  PL +           ++       I   +     ++PS +        E+ L + 
Sbjct: 896  TPKQAPLAQS---------IELDPLFREAISITVPSETTISPSNLGGAKALPSETGLDEE 946

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
                RG  +H LL+     P  K      +               +L++  T+++  P +
Sbjct: 947  AAKMRGTQVHLLLEHFSQTPVDKWDTIAEALL------PDTPYLNDLIVEATKVITAPNL 1000

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
            +      + SEV ++  +     +  I G ID++ ++  +++  ++KT+  VP      P
Sbjct: 1001 SFIFDHGTMSEVPITATLP-NLSNKPIHGIIDRLIVNDTDVWAIDFKTNTAVPAGAGLCP 1059

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
               + Q+  Y   L+  YP   +   +I+     +  +P + ++ A    
Sbjct: 1060 EGLLRQMGAYRSALRQVYPTHHIRTAIIWTRNASLMELPASHVDAAMRRA 1109


>gi|90420586|ref|ZP_01228493.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90335314|gb|EAS49067.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1209

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 301/972 (30%), Positives = 469/972 (48%), Gaps = 35/972 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L++  GL   E    I       P F  +  +  +SL+  +  PT +K    LQ      
Sbjct: 229  LRHALGLQPGEDEAAIVAAADDAPSFDAAFCDSAMSLAAASSKPTDVKFRDRLQALRDAG 288

Query: 61   CIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
              + R + L +  LT K TP K  ++ T+ +    PD  E+L++  D    I +R  + +
Sbjct: 289  TPDARLAALKALCLTAKGTPYKPSSVATKAVADALPDFPERLQQLADHVQAIDERLASLR 348

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +F+++ A+L +A      Y   K++   LDFEDLI+ T +LL +   SAW+ YK+DQ I+
Sbjct: 349  LFRASAAALVIADAFERDYAILKRRRGRLDFEDLIVRTAELLTRSAASAWVHYKLDQGID 408

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H+LIDE QDTS  QW+V+R L E+FF G       RT+FAVGDEKQSIYSF GA P+   
Sbjct: 409  HVLIDEAQDTSPRQWQVMRQLVEEFFAGAGAREVTRTVFAVGDEKQSIYSFQGASPRMFA 468

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             E+R  +KRA  A  +F  + L  SFR+ AD+L  VD VF+  EN +GLS        H+
Sbjct: 469  DEQRAMRKRAEAAEARFEEVRLTQSFRTAADVLRAVDTVFADAENRKGLSSGDEPP-AHQ 527

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            ++R    G V++W        ++  PQ   W    D  P  S A+ LARRIA  I + IG
Sbjct: 528  TARGEAPGLVEIWPVY----QAEEQPQSRDWLQAIDYEPANSPANRLARRIAAQIGDWIG 583

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
               I   G  R + A D++VLVRKR               D  I V G DR ++TDH+A+
Sbjct: 584  D-PIAHKGAVRPLAAGDVIVLVRKRSG---FVAAMAKALRDAGIPVAGADRLVITDHIAV 639

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA---- 474
            KDLMALGR + + EDDLSF  +LKSP F+F++DD+  +   R   E +   +++      
Sbjct: 640  KDLMALGRTVANFEDDLSFAAVLKSPFFDFTDDDLMGLALSRERHEPLSLGLRRICGPEG 699

Query: 475  -------------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                            ++K ++ +  + EL   + F +   F+  ILG + GR +   R 
Sbjct: 700  LARVPEFVPDETTEAFLAKCRYALTRLDELRARSGFETIFAFYARILGPEGGRARLTRRL 759

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            G++  +V+D FL+  L +E      L   ++ L   PP+IKR       EVRIMT H +K
Sbjct: 760  GSDSGEVIDAFLDLALADEDAGEPGLDAFLARLAAAPPSIKREMEQGRGEVRIMTTHASK 819

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPS----LNDDPGIPIWIPQSKSRNNIVSDLIK 637
            GLE+PVVFLVD GS  FSH H  ++   P     +       +W       N+ ++ L +
Sbjct: 820  GLEAPVVFLVDPGSAPFSHAHGSRLMEWPDMPGLVPGMSPGFLWRAAKDLENDAIAALKE 879

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              K   +EEY RLLYVGMTRA+D+L++C  S      +++      +   +         
Sbjct: 880  AEKARAEEEYRRLLYVGMTRAADRLVVCGVSGVRGPNENSWLQRAQLALSAECEPVIDAD 939

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK---NDINEP 754
                           + +   P          +  L  E   P+ L         +I E 
Sbjct: 940  GATIAWRFGAAGTGDKLAAAIPSQPDAPAPLDLSPLPPEILPPRPLSPSSAGEGTEIAED 999

Query: 755  YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
              + P          L      +    RGL +HKLLQV+  +    R+     Y    A 
Sbjct: 1000 DAIPPEAAQAFVSPVLSQTGDPSFAIRRGLAVHKLLQVLPEMAADAREAAARRYLATAAP 1059

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS 874
               A ++  L+ S   ++++P      +  S +EV V+G+I    +   ++G ID+++++
Sbjct: 1060 EMRAGDHDALVASALAVMDDPGFAAIFAAGSRAEVPVAGEITLAGRSYRVNGTIDRLAVT 1119

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
               + I +YKT+   P  +  +   +I QL++Y ++LK  YP++ +   L++   P++  
Sbjct: 1120 TTRVLIVDYKTNRPPPASLAEVSPAYIMQLALYREMLKPLYPDRPIEAALLFTEAPRLIA 1179

Query: 935  IPQNKLNKAFAE 946
            + +  + +A A 
Sbjct: 1180 LSEAVMEQAVAR 1191


>gi|159045978|ref|YP_001534772.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL
            12]
 gi|157913738|gb|ABV95171.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL
            12]
          Length = 1125

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 225/957 (23%), Positives = 383/957 (40%), Gaps = 57/957 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            ++   GL+  +S   +    +         +   V+ +  TG+ T  K A  LQ+ +   
Sbjct: 211  IEKTLGLAPGDSITALSDRTFQAKDRD---LIGRVAKACATGSSTDAKAAAKLQELADRA 267

Query: 61   CIEERFSLLSSFFLTQKFTPQ-------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
                 F +L    L                  T+            L        + R  
Sbjct: 268  PDTTWFEVLEGLLLYGATAKAGPFAPKTDAFPTKATRTALGADMGALNDLMCRVAEARQP 327

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                ++   T      A      Y+  K     LDF+DLI+    LL    V+ W+ +++
Sbjct: 328  RLALEIAAQTRIVHNFANVFLKAYQAGKDARGWLDFDDLILRAKTLLTDPGVAQWVLFRL 387

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGA 232
            D  I+H+L+DE QDTS +QW+VIR LT +F  G+   ++  RT+F VGD+KQSIYSF GA
Sbjct: 388  DGGIDHMLVDEAQDTSPVQWDVIRLLTREFTAGQGARTNVLRTIFVVGDQKQSIYSFQGA 447

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P    R ++         G       L  SFRS+  +L  VD+ FS  ++         
Sbjct: 448  DPAGFDRMRQHFGTELAQVGTPLQERLLLFSFRSSRAVLRHVDETFSRFQHQG-----LG 502

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                H +      G V LW  +             +WT   D +  +    +LAR+IA  
Sbjct: 503  GGSEHIAFHEALPGRVDLWPALAKAEKQTPQ----NWTDPVDKIAADDPRHVLARKIAAE 558

Query: 353  ISNMIGTDTIF--SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            I  ++ + T    + G+ R I   D LVLV+KR +  +   L R  K +  + + G+DR 
Sbjct: 559  IRRLLESGTQITSAKGETRPITPGDFLVLVQKRSE--IFHELIRACKTER-LPIAGSDRL 615

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             +   LA++DLMAL  F  + ED ++  C+L+SPL  +++ ++  +  Q +    ++  +
Sbjct: 616  RVGAELAVQDLMALLAFAATPEDSMALACVLRSPLCGWTQRELHVL-AQPNRNRFLWAAL 674

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
            +               ++ ++   A F  P+D    +L    GR++ I+R G E  + +D
Sbjct: 675  RD-----SDAHGETRAFLQDVRDQADFLRPYDLLERVLTRHGGRERLIARLGEEAEEGID 729

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              L+  L+ EQ    SL   ++   Q   +IKR   A  +E+R+MTVH AKGLE+P+V +
Sbjct: 730  VLLDQALQYEQTEIPSLSGFVAWFRQDDMSIKRQIDARRDEIRVMTVHGAKGLEAPIVIM 789

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
             D      ++   K + +      + G  +W    ++R  ++    + +     EE  RL
Sbjct: 790  PDCAKPSNTNTRSKLLPL------EDGPLVWAGNKETRPEVIKPRAEEIALRDTEERMRL 843

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV MTRA   LI+     T     S      + +        +        +       
Sbjct: 844  LYVAMTRAESWLIVAAAGETGTGTDSWHAMVTEGIE------AQTPHEVEFPTGTGLRLE 897

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-KTN 769
               W    P   PL    + +Q                          PS +       N
Sbjct: 898  HGVWPPDAPSPMPLHTAHSPQQPAFAPM---------PPMPERRNTRAPSDLGGAKVIEN 948

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                L  +    RG  IH LL+ +   P     +               +   +LL    
Sbjct: 949  AIEGLDKDAAQRRGKQIHLLLEHLPDHPPESWASLAPRLL---GAEDNPETVADLLAEAR 1005

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
             +LENP +    + D+ +EVS++  +       I+ G +D++ I  + I   ++K++  V
Sbjct: 1006 GVLENPALEPLFAPDTLAEVSLTAPLPGLNGAQIL-GTVDRLIIGPERIVAVDFKSNQAV 1064

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
            P   E  P   + Q+  Y + L   YP+ S+   +++     +  +P   +  A   
Sbjct: 1065 PAHPEDTPEGLLRQMGAYAEALAAIYPDMSIETAILWTRTATLMPLPHGLVIAALQR 1121


>gi|300023817|ref|YP_003756428.1| double-strand break repair helicase AddA [Hyphomicrobium
            denitrificans ATCC 51888]
 gi|299525638|gb|ADJ24107.1| double-strand break repair helicase AddA [Hyphomicrobium
            denitrificans ATCC 51888]
          Length = 1196

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 261/962 (27%), Positives = 440/962 (45%), Gaps = 30/962 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+   G+    +   ++++     Y       + ++  + TG  +      TLQ A+   
Sbjct: 239  LRQSLGVRAAIAVRELHEE---CAYVLSESDLRELTEHLATGKASDTGHVPTLQSAAGLT 295

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                RF  LS +FLT    P+K ++T+ +    P L ++   +Q     +        + 
Sbjct: 296  DAPRRFEALSGYFLTATGEPRKTLMTKALASSKPGLNDRCLAAQQRLFALSKELKALSLV 355

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-SAWIRYKIDQEINH 179
            +S++A   +A  +   Y EA++    LDF DLI+ T  LL+     + W+ +K+D  ++H
Sbjct: 356  ESSMALYVVAGIILHRYTEARRSAGALDFADLILKTKSLLEGDGGQAQWVLFKLDGGLDH 415

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVL 238
            IL+DE QDTS  QW+++++L  +FF+G  T    PRT+FAVGDEKQSIYSF GA+PK   
Sbjct: 416  ILVDEAQDTSPEQWDIVKALAHEFFMGAATRDGSPRTVFAVGDEKQSIYSFQGADPKMFA 475

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                     A +AG  +  IEL +SFR+   +L  VD VF+      GL+       +H 
Sbjct: 476  DAGIRFAALARDAGLIWKSIELTMSFRTVTPVLAAVDAVFADAAKTPGLTAGG-PPPKHN 534

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R+G  G V++W        +  +P      +      + S A+ LA RIA TI   + 
Sbjct: 535  AIRLGHAGLVEMWPTEKPDDLNAADP-----WAPLSDTSEHSPANRLAERIADTIKGWLD 589

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                  + + R I+A DIL+LVRKR                  I+V G+DR  LTD +A+
Sbjct: 590  RGERLES-QGREIRAGDILILVRKRN---PFAVPMVAALKRRGIAVAGSDRIALTDQIAV 645

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DLMALG F++  EDDL+   +LK P+F F +DD+  I   R  ++T++  +   +    
Sbjct: 646  QDLMALGDFLILPEDDLALAAVLKGPIFGFDDDDLLAIAPGRK-SKTLWSALLD-STGVK 703

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +++   + +      A F  P +FF+ +L     R++ + R G E  DV+DEFL+  L 
Sbjct: 704  PEYRDAAETLKRWRAKADFTPPFEFFSSVLDRDGAREKMLRRLGPEAADVIDEFLDLALS 763

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT---GS 595
             +  +  SL + ++EL    P +KR      +EVR+MTVH AKGLE+P+VFL DT    S
Sbjct: 764  YDDGTPPSLTQFLAELRAIAPEVKRDMDHGRDEVRVMTVHGAKGLEAPIVFLPDTCTTAS 823

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
               S   + ++  +P  +  P   +W  +  SR   V+   +  +    EE NRLLYV M
Sbjct: 824  GDLSAASLVRLSGLPRPDHIPEPIVWTVKGTSRLEAVTIARRGREAREHEERNRLLYVAM 883

Query: 656  TRASDQLIICKHSNTSNEKKSNQRT--WYDMVYDSFHNDERVKKIKLTNSINKDE----W 709
            TRA D+L I          +S         ++  +   D+  KK+    +    E     
Sbjct: 884  TRARDRLYIAGFEGKKGRAESCWYDAISEALLPVAEEIDDNGKKVWRIETAQTAELDQSR 943

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP-STIDTKGKT 768
                      E      E    +      +      P   D     I++  +        
Sbjct: 944  GEKTRQLESEERPAFASERARPEPKLSVPLAPSRLEPYAPDAEGEPIMSAKADAAATYDA 1003

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                  +    F RG + H LLQ + ++    R+   T++  K   +   K    ++   
Sbjct: 1004 PSPLAGNSEHRFLRGTLTHALLQHLPSVAASGREAIATAFVAKRGAVLSRKARDGIVRET 1063

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII---ISGRIDQISISQQNIFIFEYKT 885
              +L +         +S +EV ++  I  P        +SG+ID+++++   + I +YKT
Sbjct: 1064 LAILSSADFAPLFGPNSMAEVPIAAVIPRPSGSGPALDLSGQIDRLAVTDDEVLIVDYKT 1123

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            +   P E+  +   ++ QL+ Y   L + YP + +   L++   P++  +P + L+   +
Sbjct: 1124 NRPPPSEVRFVAPAYLYQLAAYRLALGEIYPGRRVKAALLWTDGPRLMEVPADVLDGYQS 1183

Query: 946  EI 947
             +
Sbjct: 1184 RL 1185


>gi|260429599|ref|ZP_05783576.1| double-strand break repair helicase AddA [Citreicella sp. SE45]
 gi|260420222|gb|EEX13475.1| double-strand break repair helicase AddA [Citreicella sp. SE45]
          Length = 1118

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 238/946 (25%), Positives = 396/946 (41%), Gaps = 49/946 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            ++  + L  +E  E +   ++       + +       ++ G  T    A  L   +   
Sbjct: 206  VRALYDLGPDEDAESLLSSVFLGSE---TALIADALPVLKAGKSTDQGCADKLAAFTGRN 262

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +    L +  LTQK T    + T++       + E+L++  +     R+     +  
Sbjct: 263  L--DSLVALEAALLTQKGTRSSRVPTKDTRAALGPMAERLEQLAERVEAARETRLALEAV 320

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +  LA    A+     YE  K++   LDF+DL+    DLL    V+ W+ Y++D  I+HI
Sbjct: 321  QRELALHRFAQAFLPAYETEKQRRGWLDFDDLVTRARDLLSDERVAEWVLYRLDGGIDHI 380

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            L+DE QDTS +QW+VI  L  +F  G+   S   RT+F VGD+KQSIYSF GA+P+   R
Sbjct: 381  LVDEAQDTSPVQWQVIERLAHEFTSGEGARSDVRRTIFVVGDKKQSIYSFQGADPREFDR 440

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +R        S + L  SFRS   IL +VD  F   E +    +      RHR+
Sbjct: 441  MCDEFAERLQRTEAPLSRMMLEYSFRSAEPILRLVDNCFEGREASGFSEDQ-----RHRA 495

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             +    G V LW  V +  DS  + +   W    D + ++  A ILA R+A  I   IGT
Sbjct: 496  FKSAMPGRVDLWPHVETNKDSAEDGE---WFEPVDRVGEQHHAVILANRVAGFIGRTIGT 552

Query: 360  DTIFSNGK-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                  G       R   A D L+LVR R    L + + R  K    + + G DR  +  
Sbjct: 553  PLPEEIGHSGEYRTRPAHAGDFLILVRGR--GTLFSEIIRACKQR-GLPIAGADRLKVMS 609

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             LA+KD+ AL  F+ + EDDLS    L+SPLF   E D+F +   R        Y+    
Sbjct: 610  ELAVKDIGALLAFLATPEDDLSLATALRSPLFGLGEQDLFTLAHPRK------GYLWAEL 663

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                  +  V+  + +L     F  P+D    IL    GR + + R G E  D ++  L 
Sbjct: 664  RKNRDTYPQVMAVLDDLRSETDFLRPYDLIERILTRHGGRARLLGRLGEEAEDGINALLG 723

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L  EQ    SL   +  ++     IKRA  +  + +R+MTVH AKGLE+P+V L D  
Sbjct: 724  QALAYEQTEVPSLTGFLEWMQTDDLEIKRAPDSAGSRIRVMTVHGAKGLEAPIVILPDCA 783

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                         I  SL D     +W   + ++  + ++ ++  K++ Q+E +RLLYV 
Sbjct: 784  --------RPNTQIRESLLDGATGTVWKAGADTQPRVQTEALEAAKEADQQERDRLLYVA 835

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            +TRA   L++        +       WYD V            +         E +    
Sbjct: 836  LTRAEKWLVVAAAGELGKDG----NAWYDKVKIGMERSGAEAAVFDYGDWGSGEGLRLGL 891

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
            +            + + Q+     +P             P  ++PS +        E   
Sbjct: 892  ADWTGLPHVTVPPKEVAQV----TLPDLFRQRAVVPEPAPGAVSPSGLGGAKALGGEDGD 947

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
               +   RG  +H LL+ +  LP  +R + +        +L    E  +L+     +L  
Sbjct: 948  ETEEAMLRGTALHLLLEHLSALPADRRADAVPHVLAIAEEL--PAETDSLVQEALAVLAT 1005

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
              +    + ++ +EV +S +I        I G ID++ ++ + +   ++K++  VP   E
Sbjct: 1006 LPLAPFFAPETLAEVPISAEIAPVG---RIHGIIDRLIVTPEKVIAVDFKSNRTVPATPE 1062

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
              P   + Q+  Y   L+  +P++ +   L++ +      +P + +
Sbjct: 1063 QTPEGLLRQMGAYAAALQQIWPDRCIETGLLWTATQSYMALPHDLV 1108


>gi|126724545|ref|ZP_01740388.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales
            bacterium HTCC2150]
 gi|126705709|gb|EBA04799.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales
            bacterium HTCC2150]
          Length = 1122

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 240/950 (25%), Positives = 407/950 (42%), Gaps = 61/950 (6%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   F L  N     + + ++       +D+   +   ++ G+   +K +  L   +   
Sbjct: 222  LTAAFDLPTNFQISDLLERVFLGSE---ADLLTNLLGVLKAGSANDVKASINLAPLAPFS 278

Query: 61   CIEERFSLLSSFFLTQKFT-----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
                    L S FL +              T+          ++++         RD   
Sbjct: 279  PSLSLLIKLESLFLNKSGANAGFAKIGKFPTKASQTALGSDIDQIENLMKRVESARDARL 338

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
            + +  + T A  T A+     +E  K  +  LDF+DLI+    LL    VS+WI +++D 
Sbjct: 339  SLQALEKTRALTTFARAFLPKFEHKKLTHGWLDFDDLILKARQLLTDPAVSSWILFRLDG 398

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEP 234
             I+HIL+DE QDTS +QW+V+R L ++F  G+     + RTLF VGD+KQSIYSF GA+P
Sbjct: 399  GIDHILVDEAQDTSPVQWDVVRLLAQEFTSGEGARADTQRTLFVVGDKKQSIYSFQGADP 458

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                  K       ++ G+K    +L  SFRS+A IL +VD V     +A  + +     
Sbjct: 459  AAFDNMKHHFSDALSHIGEKIHDRKLLFSFRSSAPILRLVDTVCGNNPDAGFIQD----- 513

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            + HR+      G V +   V              WT   D LP ++   +LA +IA  I 
Sbjct: 514  LNHRAFHDDLPGRVDICAVVEKPEALPDQ----DWTDSVDRLPPQNELVVLASQIAEQIQ 569

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +MIGT    + G+ R I A D L+LV++R  + L   + R  K   ++ + G DR  +  
Sbjct: 570  SMIGTAITNAKGQTRAITAGDFLILVQRR--SALFHEIIRACKA-AQLPLAGADRLKIGG 626

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             LA+KDL AL RF+   ED LS   +LKSPLF +SE DI+ +   R +     E      
Sbjct: 627  ELAVKDLGALLRFLDLNEDSLSLAAVLKSPLFGWSEQDIYSLAQGREQKYLWAE-----L 681

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                 K+   +  +++L   A F  P +    +L    GR+  I+R G+E  + +D  LN
Sbjct: 682  RDNAEKYPETVNVLNDLRKNADFLRPFELMERVLTRHGGRRALIARLGHEAEEGIDALLN 741

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L  EQN   SL   IS ++     +KR   +  +++R+MTVH AKGLE+P+V L DTG
Sbjct: 742  QALVYEQNETPSLAGFISWVDSGEIEVKRQIDSASDQIRVMTVHGAKGLEAPIVILPDTG 801

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            S+    K               GI  W    +   ++V    +      ++E  RLLYV 
Sbjct: 802  SRRNDLKSNLLPI-------ADGIVSWKTLKEDAPSVVKTAREEALTRREDEGQRLLYVA 854

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            MTRA   LI+       ++      +WY  +         V+   +   +   +W     
Sbjct: 855  MTRAEQWLIVYAAGKVDDK------SWYSQIERGMQGAGAVQG-PIGLRLESGDWTKTAH 907

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                  +                 +P+               ++PS +        +  L
Sbjct: 908  DIEIKTDVA-------------HTLPEWATISAPAKARPKPPVSPSKLGGSKALAGDGGL 954

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
             ++    RG +IHK+L+V+   P+ +  +                 + +++  +  +L +
Sbjct: 955  DEDAAMARGDVIHKMLEVLPLSPKEEWASLAEKILA-------DAPFPDVIDEVLFVLND 1007

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
            P +    + ++ +EV+++  +       I+ G+ID++ I    I + ++K++H   + + 
Sbjct: 1008 PDLAHVFAANTLTEVNITATLPELSDSQIL-GQIDRLIIEPDKITLIDFKSNHTPAKTVN 1066

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
             +P   + QL  Y   L   YPN+ +   +++     +  IP   +  A 
Sbjct: 1067 QVPDGLLRQLGAYAAALAQIYPNREIQPAILWTKNAYLQHIPHEVVRNAL 1116


>gi|163797153|ref|ZP_02191108.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199]
 gi|159177669|gb|EDP62222.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199]
          Length = 1152

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 249/952 (26%), Positives = 416/952 (43%), Gaps = 41/952 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +  R G+    S   +            + + +     +  G+ T +++  TL       
Sbjct: 225  VHARLGVEPGSSDLDLLWAASADAALDGTGLRRACE-VLGHGSKTDVERGGTLADWLALG 283

Query: 61   CIEER---FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
              + R   +      FLT +  P+K + T+      P   + L    +    I +     
Sbjct: 284  EPDRRAAAWEAYRGVFLTAEGQPRKTLATKAALAFDPAAGDTLLAEAERLSVIEETRRAR 343

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
               + T+A +TLA  +   YE AK +   LD+EDL+     LL +  V+AW+ +K+D  +
Sbjct: 344  ATAERTVALVTLAASVIDAYETAKGRRAELDYEDLVERARSLLHRPGVAAWVLFKLDGGL 403

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-----RTLFAVGDEKQSIYSFHGA 232
            +HILIDE QDTS  QW+++R+L E+FF G   H +      R++FAVGD KQSIYSF GA
Sbjct: 404  DHILIDEAQDTSPAQWDIVRALAEEFFAGSGAHDARHPTVERSIFAVGDVKQSIYSFQGA 463

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN--------- 283
            +P      +     R   A + F  + L  SFRST  +L  VD VF+ P+          
Sbjct: 464  DPAGFGTARAHFATRVAEAEKLFRRVPLEQSFRSTDAVLQAVDAVFAQPDAQDGVAEVDS 523

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A G        I H + R G  G V++W  +  Q +       E W    +    +   +
Sbjct: 524  AGGKVPIEPVPIVHSAVRAGHAGRVEVWPLLEPQDE----EIGEMWAPPIERRSTDEPRA 579

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             LA RIA  I   I         + R I+  D++VLV++R                 ++ 
Sbjct: 580  RLATRIATRIKGWIAAGEPLP-ARGRPIRPGDVMVLVQRRG---PFVHELVAALKKAEVP 635

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
            V G DR +LTD +A+ DL+A+G+ +L  EDDL+   +LK PL   SED+++ +C  R E 
Sbjct: 636  VAGVDRLMLTDQMAVMDLVAVGQTVLLPEDDLTLATVLKGPLVGLSEDELYHLCQGRREK 695

Query: 464  ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                E   +    G+  ++     +   + +A    PHDF+  +L    GR+Q I R G 
Sbjct: 696  RVWRELRLRATEGGV--YRQAYDRVRYWLRLADRVPPHDFYQRVLAR-GGREQLIHRLGF 752

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            E  D +DEFL  TL  E+ S  SLQ  +  L      +KR      + VR+MTVH AKGL
Sbjct: 753  EAEDAIDEFLAQTLAYERESTPSLQGFLHWLVVGDFEVKRELEGAGDTVRVMTVHGAKGL 812

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            ++P+V L DT         ++   +  + +D   IP+W   SK+ + + +      K+  
Sbjct: 813  QAPIVILPDTLRVP----RLQDQWLWYTADDGSDIPLWAASSKAADRVSAQARAEAKRRQ 868

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             +EY RLLYV MTRA D+L++C        +      WY+++ +        + +     
Sbjct: 869  DQEYRRLLYVAMTRAEDRLVVCGWQ---QRRAGTAGNWYELIRNGLAPIAGPQPMPDDPD 925

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
                  +    +   P   P    +         + P +        +            
Sbjct: 926  GPPMLMLETLQTASAPSPAPETALQAATLPEWASRPPLQPEPSPPVPLAPSRP-----AG 980

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
             +          D + F RGLI+H+LLQ +  +   +R      +  +       +  + 
Sbjct: 981  EEPPVRSPLDADDGRRFKRGLILHRLLQTLPEIAPDRRAAAGLRFLERPVHGLDREIAEA 1040

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
             L     +L++P    A +  S +EV + G +       ++SGRID+++++   + + ++
Sbjct: 1041 WLAEALAVLDDPAFAAAFAAGSRAEVPIVGVVAGADGPAVVSGRIDRLAVTDDEVLVVDF 1100

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            KT+   P  ++ +P  +  QL  Y  +L   YP  ++ C L++   P++  +
Sbjct: 1101 KTNRPAPLTVDAVPEAYRRQLGTYRTLLAGLYPKHAIRCALVWTDGPRLMEL 1152


>gi|84501212|ref|ZP_00999417.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
            batsensis HTCC2597]
 gi|84390503|gb|EAQ02991.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
            batsensis HTCC2597]
          Length = 1117

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 247/956 (25%), Positives = 408/956 (42%), Gaps = 51/956 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+   GL        +  D++             +  +   G+   +K A+ L     T 
Sbjct: 207  LERALGLPAGYEVGDLLGDVFLGSEM---GDIAALCAAARGGSANDVKLAEKLAGV--TA 261

Query: 61   CIEERFSLLSSFFLTQK---FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                  ++L   FL +K         + T+      P+L ++++         R R    
Sbjct: 262  PDLRALAVLEDCFLLKKEPFSAKIGKVPTKATQSAHPELMDRIEPLMARVETARSRRLAL 321

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            ++   T+A    A+     Y  AK     +DF+DLI+   DLL  +DVSAW+ +++D  I
Sbjct: 322  ELLDRTVALHDFARLFLPDYARAKMLRGAMDFDDLILRARDLLTNQDVSAWVLFRLDGGI 381

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKR 236
            +HIL+DE QDTS +QW+VI++L  +F  G        RT+F VGD+KQSIYSF GA+P  
Sbjct: 382  DHILVDEAQDTSPVQWQVIQALAREFTSGAGAQDDKTRTIFVVGDKKQSIYSFQGADPSE 441

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
              R +     R T  G     + L  SFRS   +L +VDKVF     A    +++     
Sbjct: 442  FDRMREEFDDRLTALGTPLQRMALAHSFRSAPALLALVDKVFEGRVEAGFSPDET----- 496

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
            H +      G V LW  V    +++       W    D   ++    +LARRIA TI  M
Sbjct: 497  HIAFHETLPGRVDLWPLVEKVENTEEGE----WDDPVDLPGEQDHNVVLARRIARTIRGM 552

Query: 357  IGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            I   T     +G  R I A DIL+LVR  +   L   + R  K +  + + G DR  +  
Sbjct: 553  IDDRTPLPLGDGTARPIHAGDILILVR--RRRRLFHEIIRACKGE-DLDIAGADRLRIGA 609

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             +A+KDL AL  F+ + +DDL    +LKSPLF + E  +F +  +R           +  
Sbjct: 610  EIAVKDLTALLSFLATPDDDLGLAAVLKSPLFGWDEQMLFDLAHRRETKRLWPALDAR-- 667

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                       + + +L   A F  P++    +L    GR++ ++R G E  D +D  L+
Sbjct: 668  ----EDHAETRRILRDLRDHADFLRPYELLERVLIRHDGRRRLMARLGTEAQDGIDALLD 723

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L  E+    SL   +  L+   P +KR   +  + +R+MTVH +KGLE+PVVF+ +T 
Sbjct: 724  QALAYERTDVPSLTGFLVWLQGDDPEVKRQMESAGSRIRVMTVHGSKGLEAPVVFMPETQ 783

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                     ++  +   +  D  +  W   ++    +++ L +   +  +EE +RLLYV 
Sbjct: 784  --------ARREELRGEVLSDDDLVWWNMPAREAPPLLAGLREAKLRKQREETDRLLYVA 835

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            MTRA   LI+               TWY+ + D          I+      + E  + +W
Sbjct: 836  MTRAEKWLIVAAAGELGKSGD----TWYERIRDGMTALGAAPLIRPDGEGLRLE--SGDW 889

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                P + P  ++           +P     P       P  L+PS +        E  L
Sbjct: 890  QGLTPIDPPARQDR-------RPALPDWATRPAPRAAAAPRTLSPSELGGAKALPGEEGL 942

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
             +     RG  IH+LL+ +  +PE +  +               +E   L     R+L  
Sbjct: 943  DEEAAKRRGRQIHRLLEHLPGVPETELADRAAFVLGHGPDAAEGEELALLTGEAQRILFR 1002

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
            P +      ++  EVSV+  ++       I G ID++ +  + +   +YKT+  VP   E
Sbjct: 1003 PNLRHLFGPEALVEVSVTADLDA-LDGRRIHGTIDRLIVGNETVLAVDYKTNAVVPDRPE 1061

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
             +P   + Q+  Y   L   YP + +   L++     + ++PQ+ +  A  + +T 
Sbjct: 1062 QVPDALLRQMGAYAAALARIYPGRKIETALLWTRTADLMVLPQDLVIAALHDTTTS 1117


>gi|86136735|ref|ZP_01055313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            MED193]
 gi|85826059|gb|EAQ46256.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            MED193]
          Length = 1122

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 233/962 (24%), Positives = 398/962 (41%), Gaps = 67/962 (6%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L  RF L        +   ++       +++       +ETG  T  + A  L  A  T 
Sbjct: 212  LLARFDLPEEFDQPALEALVFLGGE---AELLSRTRAMLETGGTTDQRAAAKL--AGITT 266

Query: 61   CIEERFSLLSSFFLTQKFT------PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                  + L S FLT                T+++ + +  L ++L+         R + 
Sbjct: 267  PTLADLATLESIFLTGASAADPFAAKVGKFPTKKLREANVALMDQLEPLMLRVESARAKR 326

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  + +      A+     YE  K++   LDF+DLI+N   LL    V+AW+ Y++D
Sbjct: 327  LALMAARKSQDLHQFAQAFLPEYEARKQQRGWLDFDDLILNARHLLNDPAVAAWVLYRLD 386

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233
              I+HIL+DE QDTS +QW+VI  L ++F  G    S   RT+F VGD+KQSIYSF GA+
Sbjct: 387  GGIDHILVDEAQDTSPVQWDVIEKLAQEFTAGIGARSDVERTIFVVGDKKQSIYSFQGAD 446

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P    R +     R + +G       L  SFRS+A IL +VD VF       G   D+  
Sbjct: 447  PDAFDRMQVEFANRLSESGSGLQNAALEFSFRSSAAILRLVDLVFKDSP-RAGFHSDAL- 504

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               HR+ +    G V LW  V    +   +  +  WT   D         ILA RIA  I
Sbjct: 505  ---HRAFKSDLPGRVDLWPAV----EKTDDDDESDWTDPVDRPGSRHHTVILAERIARQI 557

Query: 354  SNMIGT-------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              MI                ++R + A D L+LV++R +  L + + R  K +  + + G
Sbjct: 558  KEMIDNKVTIPEDGPTRGTFQRRPVHAGDFLILVQRRSE--LFSEIIRACK-NADLPIAG 614

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             DR  +   LA+KD+ AL  F+ + ED L+   +LKSPLF +SE  +F +   R  ++ +
Sbjct: 615  ADRLKVGAELAVKDIAALLSFLATPEDSLALAEVLKSPLFGWSEQMLFDL-AHRRSSKHL 673

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            +  ++        +F   +  + +L     F  P D    IL   +GRQ+ + R G E  
Sbjct: 674  WPALRDR----REEFPETMAVLDDLRDQTDFLRPFDLIERILTRHQGRQKLLGRLGAEAE 729

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D ++  L+  L  E++   SL   +  ++     IKR   A+ + +R+M+VH +KGLE+P
Sbjct: 730  DGINALLSQALAYERSDIPSLTGFLVWMQTDDLDIKRQMGASGDMIRVMSVHGSKGLEAP 789

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L DT  +               +    G P+W        +++    +  ++  Q E
Sbjct: 790  IVILPDTAKRNAPSD--------AEIMVADGTPLWKLPKDQMPDLLFSAREAAQEKQQNE 841

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV +TRA   LI+      S E  S  +     + +       +   +    ++ 
Sbjct: 842  RLRLLYVALTRAEKWLIVATAGTLSKEGDSWYQRVEAALLEGGATKCDLPGGEGL-RLSH 900

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +W   E  +   ++                 +P+         +     + PS +    
Sbjct: 901  GDWEGLELVSKEVQS------------KHRSVLPEIFTHLAPAYLAPEPAITPSDLGGAK 948

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                +  L + +   RG  +H LL+ +   P            ++      A +   LL 
Sbjct: 949  ALPGDQGLDEEEAKARGSRLHLLLEHLPGHPSSDWPLLADRLLSE------ATDRAALLA 1002

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
              + +L N  ++   + D+ +EV V+           + G ID++ +    +   ++K++
Sbjct: 1003 EASAVLSNASLSHIFAPDTLAEVPVTAHF----GSQRLYGIIDRLVVRPDKVLAVDFKSN 1058

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              VP      P   + Q+  Y   L   YP++ +   L++     +  +P + +  A  E
Sbjct: 1059 AEVPNTAAACPKGLLRQMGAYGHALAQIYPDRPIETALLWTRNASLMSLPHDLVTDALKE 1118

Query: 947  IS 948
            + 
Sbjct: 1119 VL 1120


>gi|149201424|ref|ZP_01878399.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp.
            TM1035]
 gi|149145757|gb|EDM33783.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp.
            TM1035]
          Length = 1123

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 233/948 (24%), Positives = 394/948 (41%), Gaps = 55/948 (5%)

Query: 11   ESYELIYKDLWPLPYFQVSD--INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
            +  E +   +     F  S+  +  ++  +++ G+   +K A  L Q S          +
Sbjct: 213  DQPEGLSAQMIRDGVFLGSEQALLGHLMPALQAGSANDVKAAAKLAQMSAL--DLRALPV 270

Query: 69   LSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            L   FLT K           +  T+        +  ++++        R         + 
Sbjct: 271  LEDVFLTGKGAKSPFSAKLGSFPTKATQGVLASVLPQIEQWMLRVEAARPARLALLAMQK 330

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            T A    A+     YE AK+   +LDF+DLI+   DLL    V+AW+ Y++D  I+HIL+
Sbjct: 331  TRALHDFARAFLPAYERAKQLRGLLDFDDLILRARDLLTDPAVAAWVLYRLDGGIDHILV 390

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            DE QDTS +QW+VI  L ++F  G+   +   RT+F VGD+KQSIYSF GA+P+   R +
Sbjct: 391  DEAQDTSPVQWQVIERLAQEFTSGEGARADVARTIFVVGDKKQSIYSFQGADPREFDRMQ 450

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            +    R +          L  SFRS+  ILT VD  F     +    E+      H++  
Sbjct: 451  QEFGLRLSATNTPLQSRVLAYSFRSSRAILTTVDCCFDQSSESGFTPEEG-----HKAFF 505

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V LW  V    + +      +W    D       A +LAR++A  + +MI    
Sbjct: 506  DTLPGRVDLWPLVEKPDEDEPP----AWHMPVDIRATNDPAILLARQVAAAMRDMITARQ 561

Query: 362  IFSN----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               +       R +Q  D L+LVR+R  + L   + R  K    + + G DR  +   LA
Sbjct: 562  AIPDPKSPSGFRAVQPGDFLILVRRR--SALFHEIIRECKAQ-GLPIAGADRLKVGAELA 618

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            ++DL AL  F+ + ED L+    L+SPLF +SE  ++ +   R+      E   + A   
Sbjct: 619  VRDLEALLSFLATPEDSLALATALRSPLFGWSEHQLYTLAQGRNRPYLWEELRARAA--- 675

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
              +    I  + +L+  A F  P+D    +L   +GR++ ++R G E  D +D  L   +
Sbjct: 676  --EHPDTITILRDLLDHADFLRPYDLIERVLTRHEGRRRLLARLGTEAEDGIDALLAQAM 733

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              E+ +  SL   +  +E     IKR   +  N +R+MTVH AKGLE+PVV L + G   
Sbjct: 734  AYERRAVDSLTGFLVWMETDDLEIKRQLDSAGNRIRVMTVHGAKGLEAPVVILPECG--- 790

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                 + +    P +    G  +W  ++      ++  +   +++   E +RLLYV MTR
Sbjct: 791  -----VWRTPPAPQIVTQAGHALWTGRADDMPPSLAAALDTERRALLAERDRLLYVAMTR 845

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A   LI+  H +   +      TWY+ V                    + +   +  +  
Sbjct: 846  AETWLIVAAHGDLGKQGD----TWYEKVQRGMLAAGAQPHSFAHGPGLRLDHGIWAETET 901

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                       +      +      LF            L+PS +        E  L + 
Sbjct: 902  D----------SAPSAPPQTITLDPLFQRPAPLPARIKTLSPSDLGGAKALPGERGLDEE 951

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
                RG  IH+LL+ + T+P H          +        +E   LL    ++L  P +
Sbjct: 952  AAKRRGRQIHRLLEFLPTVPAHDWPATAARLLSNGGDAATGEELALLLAEADKVLTRPSL 1011

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                +  + +EV+++  ++ P +   I G ID++ I    I   ++KT+  VP      P
Sbjct: 1012 LALFTPAALTEVAITATLD-PLQGRRIHGVIDRLIIDDTRILAVDFKTNALVPDTPADCP 1070

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
               + Q+  Y   L   YP+  +   +++     +  +P + +  A  
Sbjct: 1071 DALLRQMGAYAHALGQLYPDHRIDTAILWTRTATLMPLPHDLVTAALE 1118


>gi|254294694|ref|YP_003060717.1| double-strand break repair helicase AddA [Hirschia baltica ATCC
            49814]
 gi|254043225|gb|ACT60020.1| double-strand break repair helicase AddA [Hirschia baltica ATCC
            49814]
          Length = 1198

 Score =  556 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/977 (25%), Positives = 458/977 (46%), Gaps = 44/977 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            LKN    + ++S + + +     P F    I  ++S+  + G  T    A+ L+Q     
Sbjct: 234  LKNALN-AGDDSVDQLIEYAM-GPAFPKEKIRPFISVLYD-GAKTDQASAEILEQTLLAN 290

Query: 61   CIEERFSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLK-------KSQDEFIKIRD 112
              +E FS   + FLT     +K N  T +I K SP+++E  +       +       + +
Sbjct: 291  TPQEAFSHYKNLFLTSSEVFRKTNPYTVKIAKSSPEIEELFQIKSIPEGEEVYRVRNLLE 350

Query: 113  RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
            + N    ++ + A L ++  + + Y   K++   +DF+DLI +   LL  R ++ W+ +K
Sbjct: 351  QINARAAYERSAALLRISNIVFSDYARQKRRRAAMDFDDLIESAAGLLTTRSMAQWVLWK 410

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHG 231
            ++  ++HIL+DE QDTS  QW+++ +LT +FF G+   H +PRT+F VGDEKQSIYSF G
Sbjct: 411  LEGGLSHILLDEAQDTSPEQWKLLNALTAEFFSGEGVEHENPRTMFVVGDEKQSIYSFQG 470

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-----ENAQG 286
            A+P++ L +++   + +  A Q+    ++ +SFRS  ++L  VD+VF             
Sbjct: 471  ADPEKFLSKRQEFIEDSARAKQENKTPDILMSFRSAPEVLAFVDEVFDTGAFDGEAAFSL 530

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               +    +RH   R G +G+V+LW  +  + + +  P    W +      + +  + LA
Sbjct: 531  KPPEDGNIMRHLPFRRGHIGSVELWPLLRPKVNDESTP----WDAPLGQDLETNPKAELA 586

Query: 347  RRIAYTISNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
             RIA  + N+I     IF  GK R  +  D+L+LVR RK   L   + + LK +  I V 
Sbjct: 587  DRIAKWVKNIIDTKQAIFDEGKMRPARPGDVLILVRGRKGG-LFDSIIKALKTN-NIPVA 644

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
            G DR  L D L ++DL+ L RF L  EDDL+   +L  P    +E+D           E+
Sbjct: 645  GADRIELLDSLPVQDLLNLIRFALCPEDDLTLAEILTGPFGGLNENDNLYPLAHNRGDES 704

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISR 520
            ++  + K     +   +  ++   E         P++F T +L  +      G Q+  SR
Sbjct: 705  LWSRVLKSEMPSVLPVREFLQGCLERR----HIQPYEFLTAVLETQGHDGMDGWQKIQSR 760

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
             G    + +   ++     +    SSLQ  ++ +E+    +KR  S   +EVR+MTVH +
Sbjct: 761  LGPPAKEPMTALMDRAAGFDAKGPSSLQLFLATIEKSGGEVKRELSGPQDEVRVMTVHGS 820

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----PGIPIWIPQSKSRNNIVSDL 635
            KGLE+P+V + DT +   S      +       DD      G+PIW   +K    + + L
Sbjct: 821  KGLEAPIVIVPDTCAATKSGVDNNLLITPEKERDDHTSPPEGMPIWSGSAKQDTTLAAKL 880

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--TWYDMVYDSFHNDE 693
                      E+ RLLYV +TRA D+L+IC   +   + K+     +W+ + + +     
Sbjct: 881  RLLADARATREHRRLLYVALTRAKDRLLICGPWSGGVKSKTGHSETSWFAICHKAMQRLA 940

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHP-ENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                 ++ +  N +     +    +    +       I +  +   IP  +   + ++  
Sbjct: 941  DKGLAQIIDDPNVEPIEGEDNPIAYQFGASQYTDNHAIIENDELDYIPDWIGKTVPHESG 1000

Query: 753  EPYILNPSTIDTKGKTNLESLL-SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
                  PS++  +    L   + S  +   RG +IH LLQ +  +P+   +     +  +
Sbjct: 1001 GSRYAAPSSLLGEEPAVLPPFVKSQEERLKRGRLIHTLLQTLPDIPKADWEKQAMHFLGR 1060

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK-KDIIISGRIDQ 870
            +     A++   +      +L++P        +S +EV + G  +    K ++I+GR+D+
Sbjct: 1061 D-PSIKAEDRIEMFERAIDVLDDPKFDPIFGTNSKAEVPIVGGNDKKLPKGMLINGRVDR 1119

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            + ++ +++ I ++KT    P   E +  T+ AQ++ Y  +L+ +YPNK + C +++   P
Sbjct: 1120 LVVTDESVLIVDFKTDRPAPAREEDMGPTYTAQMAAYRAVLESAYPNKQIRCAIVWTDGP 1179

Query: 931  KVFIIPQNKLNKAFAEI 947
            K+  +  ++++ +   +
Sbjct: 1180 KLMELDADRMDTSLNAL 1196


>gi|260575782|ref|ZP_05843778.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2]
 gi|259021935|gb|EEW25235.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2]
          Length = 1090

 Score =  556 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 227/942 (24%), Positives = 377/942 (40%), Gaps = 66/942 (7%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  FGL    + E +   ++       ++    V+  M TG+   +K A  L+       
Sbjct: 208  RALFGLPKGLTAETLLAQVFLGGE---AEWLAQVASVMATGSANDVKAADKLRALRLEVP 264

Query: 62   IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
                 + L    LT     +       +  T+    K   L  +L+         R+   
Sbjct: 265  DLAVLAALEDVLLTGPKAAEPFTAKLGSFPTKATQPKLGPLLPRLQDLMRRVEAAREDRM 324

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                   T      A      Y   K     LDF+DLI     LL    V+ W+ +++D 
Sbjct: 325  ALLAADRTRILHAFAAAFLPRYAARKLARGALDFDDLIARAKALLTDPSVAQWVLFRLDG 384

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             I+HIL+DE QDTS  QW+VIR L ++F  G+     PRT+F VGD+KQSIYSF GA+  
Sbjct: 385  GIDHILVDEAQDTSPEQWDVIRLLAQEFTAGRGARDVPRTIFVVGDKKQSIYSFQGADVG 444

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                 + + +            +EL  SFRS+  IL +VD  F    +A     D    +
Sbjct: 445  AFEAMQSLFRANLAQVNTPLQGLELEYSFRSSPLILRLVDLTFDATTHA-----DVGGKV 499

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H + +    G V+LW  +    +    P+   W    D +  E  A+ L R++A  I N
Sbjct: 500  NHIAFKSAMPGQVELWPAL----EPSGKPEDGDWFDPVDLISDEHVAARLGRQVAARIKN 555

Query: 356  MIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            MI     I  +G +R + A D LVLVR+R  + +   + R  K    + + G DR  L  
Sbjct: 556  MIDAGVQIPVDGGERPVHAGDFLVLVRRR--SAVFAEIIRACKA-AGLPIAGADRLKLGG 612

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             +A+KDL +L  F+ + EDDL+   +L+SPL  ++E  ++ +   R  T  +++ +++  
Sbjct: 613  EMAVKDLASLLAFLATPEDDLALAEVLRSPLLGWTEGQLYTLAQGR--TGYLWQALRQAD 670

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                      +  +H+L   A F  P D     L    GR+  ++R G E  D +DE L+
Sbjct: 671  ------APETLAILHDLRDQADFLRPFDLIERALTRHDGRRLLLARLGPEAEDGIDELLS 724

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L  E+N   SL   +S L+     +KR   +    +R+MTVH AKGLE+P+V L DT 
Sbjct: 725  QALAYERNDVPSLTGFLSWLQTDDVEVKRQADSAGRRIRVMTVHGAKGLEAPIVILPDTA 784

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                     +   +        G  IW   ++       +  +  + + + E  RLLYV 
Sbjct: 785  DHA-PRDRAELYRL------ADGSMIWKTAAEDSPAPTREAREARRLAAEAESLRLLYVA 837

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            MTRA   L++      S        +W+D +            +     +    W     
Sbjct: 838  MTRAQCWLMVAAAGKVSGA------SWHDRIRAGMMAAGAEAAVGGGLILRGGVW----- 886

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                    P           D   +P                L+PS +        +   
Sbjct: 887  --------PENAPRAGISAADLPALPDWAQRHAPVPPTAEKPLSPSDLGGAKVLPGDLAG 938

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
                   RG  +H LL+ +             S   +      A++   LL   T +L  
Sbjct: 939  DTAAAKLRGTRLHLLLEHLPGQDPALWPALAESLLAE------AEDRLALLAEATTVLTA 992

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
            P +    + D+  EVSV+ +I        + G ID++ +    +   +YK++  +P    
Sbjct: 993  PDLAPIFAADALKEVSVTAEI----DGKRLYGTIDRLILLPDRVLAIDYKSNSVIPATSA 1048

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
             +P   + Q+  Y   L   YP++ +   +++ +  ++  +P
Sbjct: 1049 QVPEGLLRQMRAYAAALAQIYPDRRVETAILWTATARLMPVP 1090


>gi|56698684|ref|YP_169061.1| ATP-dependent DNA helicase UvrD [Ruegeria pomeroyi DSS-3]
 gi|56680421|gb|AAV97087.1| ATP-dependent DNA helicase, UvrD/Rep family [Ruegeria pomeroyi DSS-3]
          Length = 1118

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 227/963 (23%), Positives = 383/963 (39%), Gaps = 69/963 (7%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   F L      + +   ++        ++ + +  ++        K A  L   ++  
Sbjct: 208  LLTLFDLPEGFDTQALLSSVFLGGEV---ELIRALLPALMGSGSNDQKAAARLAAFTRPT 264

Query: 61   CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDL-KEKLKKSQDEFIKIRDR 113
                   +L    LT             +  T+ + + +      +L+         RD+
Sbjct: 265  LDG--LIVLEQVLLTGASAKSPFSAKIDSFPTKGLRQGALARQMPQLEALMLRVEAARDQ 322

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                   + +LA    A      Y+  K+    LDF+DLI+    LL    V+AW+ Y++
Sbjct: 323  RLALAAAQKSLALHRFAAVFLPEYDRRKQLRGWLDFDDLILKARQLLTDPSVAAWVLYRL 382

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGA 232
            D  I+HIL+DE QDTS  QW+VI  L ++F  G+   S   RT+F VGD+KQSIYSF GA
Sbjct: 383  DGGIDHILVDEAQDTSPEQWDVIEKLAQEFTSGEGARSGVERTIFVVGDKKQSIYSFQGA 442

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P    R +    ++  ++G     + L  SFRS++ IL +VD VF     A        
Sbjct: 443  DPDAFDRMQGEFGRKLRDSGSNLEDLTLEFSFRSSSAILGLVDLVFRDRAQAGF-----R 497

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                HR+ +    G V LW  +    D     +   WT   D         ILA R+A  
Sbjct: 498  KESLHRAFKSDLPGRVDLWPLIDKVED----EEDGDWTDPVDRPGARHHTVILAERVAGQ 553

Query: 353  ISNMIGTDTIFSNGK-------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            I  MI                 +R ++  D L+LV++R D  L   + R  K    + + 
Sbjct: 554  IREMIDRGETIPVDGETPGTFARRRVRPGDFLILVQRRSD--LFAEIIRACKA-AGLPIA 610

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
            G DR  +   LA+KDL AL  F+ + EDDLS   +LKSPLF +SE  +F +  +R E   
Sbjct: 611  GADRLKVGAELAVKDLAALLSFLATPEDDLSLATVLKSPLFGWSEQRLFDLAHRRSERYL 670

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
                  + A     +F   +  + +L     F  P+D    IL    GR++ + R G E 
Sbjct: 671  WAALRARRA-----EFAETLAVLDDLRGQTDFLRPYDLIERILTRHDGRRKLLGRLGAEA 725

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             D ++  L+  L  E++   SL   +  ++     IKR  +   + +R+MTVH +KGLE+
Sbjct: 726  EDGINALLSQALAYERSDIPSLTGFLVWMQTDDLEIKRQMTGVGDMIRVMTVHGSKGLEA 785

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            P+V L DT  +               +    G P+W     S   ++S   +  +     
Sbjct: 786  PIVILPDTAQRRAPRD--------AEIMLAEGTPLWRVPRDSSPALLSTAREAAQSREMN 837

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E  RLLYV +TRA   LI+    +  ++      +WY  V ++               + 
Sbjct: 838  ERLRLLYVALTRAEKWLIVAAAGDLGSDG----NSWYQAVANAMAEAGATGTEGDILRLE 893

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
              +W A                E        +  P     P    +     + PS +   
Sbjct: 894  HGDWTAP------------ALVEERATPYTAETPPDWASRPAPAPVAAVKTIAPSDLGGA 941

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                 E+   +     RG  +H LL+ +        ++       +      A    +LL
Sbjct: 942  KALPGEAGQDEEAAKARGSQLHLLLEHLPGTDPAGWQDHAR----RLLPDLDALLRDDLL 997

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                 +L +P +    +  + +EV ++  +        + G ID++ I    I + ++K+
Sbjct: 998  AEARGVLNSPALAEIFAPGTLAEVPITAPL----GARRLHGVIDRLLIGDSEIGVVDFKS 1053

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            +  VP   E  P   + Q+  Y   L+  YP  ++   +++    ++  +P + +  A  
Sbjct: 1054 NAVVPARPEACPEGLLRQMGAYAYALEQVYPGHTIRTGILWTRTAQIMWLPHDLVAAALG 1113

Query: 946  EIS 948
             I 
Sbjct: 1114 RIQ 1116


>gi|126734388|ref|ZP_01750135.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            CCS2]
 gi|126717254|gb|EBA14118.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            CCS2]
          Length = 1112

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 233/965 (24%), Positives = 389/965 (40%), Gaps = 74/965 (7%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-T 59
            +     +    + E +  D++         +   ++ +  +G+   +K A  L+      
Sbjct: 207  ISETLNIPQGITVENLLDDVFDK------GLLLQLANACASGSANDIKAANALRSILDYP 260

Query: 60   QCIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
                +  ++L S FLT +              T+       DL   ++        +R  
Sbjct: 261  HSPHDVLAVLESVFLTGEGAKAPFTAKIGTFPTKATRAAHEDLMADIEPLMGRVEDMRPH 320

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                     T+A    A      YE  K     LDF+DLI     LL  RDV+ W+ +++
Sbjct: 321  RLGLLALDRTMALYDFANVFVPAYEARKLAMGALDFDDLIRKAKALLTDRDVAQWVLFRL 380

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGA 232
            D  I+HIL+DE QDTS  QW VI  LT++F  G+       RT+F VGD+KQSIYSF GA
Sbjct: 381  DGGIDHILVDEAQDTSPTQWAVIEQLTQEFATGEGARMDRERTVFVVGDKKQSIYSFQGA 440

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P    + K   +       + F +  L  SFRS+  IL+VVD+ F     A        
Sbjct: 441  DPAAFDQMKTHFRDAHQAISKPFEVTSLDHSFRSSQAILSVVDQTFIEDRAAGM-----D 495

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             ++ H + +    G V LW  +    +         W    D         ++A+R+A  
Sbjct: 496  DSLTHIAFKENMPGRVDLWPVI----EKSKVEDNREWFKPVDEPSATDHTVLMAQRVAEQ 551

Query: 353  ISNMIGTDTIFSN------GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            I  MI  +TI           +R I   D L+LV++R +  L   + R  K    + + G
Sbjct: 552  IRYMIAHETIPEEVGNTGAYNRRSITEGDFLILVQRRSE--LFAEIIRACKA-ADLKIAG 608

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             DR  +   LA+KDL A+  F+   EDDLS    L+SPLF +SE D+F +   R +   +
Sbjct: 609  ADRLRVGAELAVKDLAAVLSFLALPEDDLSLASALRSPLFGWSEQDLFTLAHHRPKNSFL 668

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            +E ++   +         +  +++L   + F  P+D    IL    GR++ ++R G E  
Sbjct: 669  WEALRNSDHN------ETLAILNDLRGKSDFLRPYDLIERILTRHDGRRKLLARLGPEAE 722

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D +D  L+  L  E     SL   ++ +E     +KR   +  + +R+MTVH AKGLE+P
Sbjct: 723  DGIDALLSQALAYESTGVPSLTGFLTWMETDDLEVKRQMESQGDRIRVMTVHGAKGLEAP 782

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L DT          + + +   L       IW   +KS    V  L   +      E
Sbjct: 783  IVILPDTAK--------RDVKVNQELLPADDHVIWKTPAKSSAPSVIALRDKVIAKQARE 834

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV MTRA   LI    +  + +      +WY++V D                +  
Sbjct: 835  RMRLLYVAMTRAEKWLI----AGAAGDIGEGDASWYNLVADGMDRRGAYD--AALGDMPL 888

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                  +W       T  + +  +                          + PS +    
Sbjct: 889  RRVSELDWDAPDLVTTDAKPDTIVAPPQFG----------ALPIPKATKTIAPSELPGDK 938

Query: 767  KTNLESLLSD-NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                +    D +    RG  IH LL+ +    E +R                  +   L+
Sbjct: 939  IMKGDPAGDDIDDAKARGTQIHLLLEHLPMAAEEQRHELGLQLLQ--------TDDPALV 990

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
              +  L++ P +    + ++ +EV ++  I        + G ID++ I    I   +YK+
Sbjct: 991  DDVIALIKKPELGWLWNANALTEVVITADIPQLG---RVHGAIDRLIIGPDTITAIDYKS 1047

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            +  VP   E  P     QL+ Y+  L++ YP+  +   +++     + ++PQ  L++A  
Sbjct: 1048 NRLVPSTPEDTPIGLQRQLAAYDYALREIYPDHQITTAILWTHTGTLTVLPQQHLHEALN 1107

Query: 946  EISTK 950
             ++T 
Sbjct: 1108 SLATS 1112


>gi|255262268|ref|ZP_05341610.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62]
 gi|255104603|gb|EET47277.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62]
          Length = 1119

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 237/956 (24%), Positives = 407/956 (42%), Gaps = 55/956 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            LK  FGL  + + +     ++ +     +D   ++   +   +PT  K    L++  +  
Sbjct: 206  LKAVFGLDRDANAQTPIDKIFGVLSQ--TDTRSFLD-VLAAASPTYQKIGVELERTLKQG 262

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
               E +  L   FL      +         +   +    L+ +L    DE  ++      
Sbjct: 263  ASTEGYQWLKKSFLYSDGRSKVGNWPQANHKGAVEAFEPLRGELDTFLDEVWQVSQIEKA 322

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             + F+ T A  T A      YE  K+++  LDF+DLI+    LL    V+ W+ +++D  
Sbjct: 323  IRSFEMTQALHTFATAFLPMYEARKQQHGWLDFDDLILKAKSLLTNPQVAQWVLFRLDGG 382

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT-HSSPRTLFAVGDEKQSIYSFHGAEPK 235
            I+HIL+DE QDTS  QW VI +L ++F  G+   H  PRTLF VGD+KQSIYSF GA+P 
Sbjct: 383  IDHILVDEAQDTSPAQWSVIENLAQEFTSGEGARHDEPRTLFVVGDKKQSIYSFQGADPN 442

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                 + + ++R        + + L  SFRS+  ILT+VD+ FS        S      +
Sbjct: 443  AFDTMRDMFKERLEQIEIGLNTLSLDYSFRSSEPILTLVDQTFS-----GDRSAGLEKDV 497

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H + +    G V LW  +   +      +   W    D + Q+     LAR IA  I  
Sbjct: 498  FHIAFKNQMPGRVDLWPAIEPTNTK----EDRDWFDPIDQVGQDHHYVQLARGIADEILR 553

Query: 356  MIGTDTIFSN----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            M   +TI         KR I   DIL+LV+ R                  ++V G DR  
Sbjct: 554  MKAHETIPDEVDRVPMKRPITEGDILILVQGRNSGLFSE--IIAACKQRGLAVAGADRLK 611

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            +   LA++D+ A+  F+   EDDLS    LKSP+F +SE D++ +  +R + + +   ++
Sbjct: 612  VGAELAVRDITAVLSFLALPEDDLSLAGALKSPIFGWSEQDLYDLAHKRPKGQYLSATLR 671

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            + A    S+F    + + +L   A F  P+D    +L     R + + R G E  D ++ 
Sbjct: 672  ERA----SEFPKTREILDDLDRQADFLRPYDLIERLLTRHDARDRLLGRLGTEAEDGINA 727

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
             L   L  E++S  SL   +  +      IKR      +++R+MTVH AKGLE+P+VFL 
Sbjct: 728  LLAQALAYERSSIPSLTGFLEWMAAGELEIKRQMDNAGDQIRVMTVHGAKGLEAPIVFLP 787

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            DT          KK   +P L       +W   S     ++SD  +  +   ++E  RLL
Sbjct: 788  DTAK--------KKPMPLPKLTTLSDTVVWRGASTDVPQVISDRTERERLKQEDERQRLL 839

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YV MTRA   L++C   +   +      +WY  V         V +  +           
Sbjct: 840  YVAMTRAEKWLVVCAAGDVGGDGD----SWYQDVTYGMSQAGAVDETFVIG-------QG 888

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
              ++     + PL +   +K      K+P     P     +    L+PS +        E
Sbjct: 889  LRFANDGWSDLPLNQ--LVKPSASTSKVPDFATIPTPQHDDPLPTLSPSDLGGAKALFGE 946

Query: 772  SLLSDN-QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
            +  +D+  +  RG  IH +L+ +  +          +          +    + + +  R
Sbjct: 947  TETADDGTSKERGTAIHLVLEHLPHIKPEDHSVVAENLL-----GTDSPFLADAIETSQR 1001

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
            LL  P ++      + +EV ++  ++       I G ID++ +  + +   ++K++  VP
Sbjct: 1002 LLAKPELSHIFETGTLAEVPITANLDA-LDGRRIHGTIDRLVVDSETVTAIDFKSNRMVP 1060

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              ++  P   + Q+  Y   L+  YP+K++   +++     +  +P   +  A   
Sbjct: 1061 DVVDKTPEGILRQMGAYLAALRLVYPSKTVSTAVLWTETGVLMPMPDELVLGALDR 1116


>gi|85705745|ref|ZP_01036842.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp.
            217]
 gi|85669735|gb|EAQ24599.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp.
            217]
          Length = 1123

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 243/956 (25%), Positives = 396/956 (41%), Gaps = 56/956 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   F      S E+I   ++         +   +  +++ G+   +K A  L Q S   
Sbjct: 208  LATLFDQPEGLSPEMIRDRVFLGNEQ---SLLDQLLPALQAGSTNDVKAAAKLVQISAL- 263

Query: 61   CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                    L   FLT K +         +  T+        +  ++++        R   
Sbjct: 264  -DLRALPFLEDVFLTGKSSKSPFSAKLGSFPTKATQVTLAPVMPQIEQWMLRVEDTRPAR 322

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  + T A    A+     YE AK+   +LDF+DLI+   DLL    V+AW+ Y++D
Sbjct: 323  LALLAMQKTRALHDFARAFLPAYERAKQLRGLLDFDDLILRARDLLTAPAVAAWVLYRLD 382

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233
              I+HIL+DE QDTS +QW+VI  L ++F  G+   +   RT+F VGD+KQSIYSF GA+
Sbjct: 383  GGIDHILVDEAQDTSPVQWQVIERLAQEFTSGEGARADVARTIFIVGDKKQSIYSFQGAD 442

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   R +R    R +          L  SFRS+  ILT VD  F     +       T 
Sbjct: 443  PREFDRMQREFGLRLSATNSPLQSRVLAYSFRSSRAILTTVDCCFDQSSESGF-----TP 497

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H++      G V LW  V          +  +W    D       A +LAR++A  +
Sbjct: 498  EQGHKAFFDTLPGRVDLWPVVEKP----EEEEPPAWHMPVDIRATNDPAILLARQVAAAM 553

Query: 354  SNMIGTDTIFSNGK----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
             +MI       + K     R +Q  D L+LVR+R  + L   + R  K    + + G DR
Sbjct: 554  RDMIAARQAIPDSKSPSGFRAVQPGDFLILVRRR--SALFHEIIRECKAQ-GLPIAGADR 610

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +   LA++DL AL  F+ + ED L+    L+SPLF +SE  ++ +   R+      E 
Sbjct: 611  LKVGAELAVRDLEALLSFLATPEDSLALAIALRSPLFGWSEAQLYDLAQGRNRPYLWEEL 670

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                A         V+  +H+L + A F  P+D    +L    GR++ ++R G E  D +
Sbjct: 671  RAHEAER-----PEVMAVLHDLRNHADFLRPYDLIERVLTRHDGRRRLLARLGTEAEDGI 725

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            D  L   +  E  +  SL   +  +E     IKR   +  N +R+MTVH AKGLE+PVV 
Sbjct: 726  DALLAQAMAYESRAVDSLTGFLVWMETDDLEIKRQLDSAGNRIRVMTVHGAKGLEAPVVI 785

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L + G+    +         P +    G  +W  ++      ++  I+  +++   E +R
Sbjct: 786  LPECGTWRMPN--------APQIVTQSGHALWTGRADDMPPTLAKAIEAERRALLAERDR 837

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV MTRA   LI+  H +   +      TWYD V         V    +     + + 
Sbjct: 838  LLYVAMTRAETWLIVAAHGDLGKQGD----TWYDKVQRGMQAAGAVPHSFVQGPGFRLDH 893

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
              +  +        L R  T+            LF            L+PS +       
Sbjct: 894  GIWAETETVSAPPALSRTVTL----------DPLFQRPAPLPARLKTLSPSDLGGAKALP 943

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
             E  L +     RG  IH+LL+ + T+P            +  +      E   LL    
Sbjct: 944  GERGLDEEAAKRRGRQIHRLLEFLPTVPAADWPGTAARLLSNGSDAATGDELALLLAEAD 1003

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
            ++L  P +++  + D+ +EV+V+  +        I G ID++ I +  I   ++KT+  V
Sbjct: 1004 KVLTRPSLSSLFTPDALTEVAVTAHLAA-LHGRRIHGIIDRLIIDETRILAVDFKTNALV 1062

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            P      P   + Q+  Y   L   YP++ +   +++     +  +P + +     
Sbjct: 1063 PDTARDCPDALLRQMGAYAHALSQLYPDRRIDTAILWTRTATLMDLPHDLVTATLE 1118


>gi|119385518|ref|YP_916574.1| UvrD-like DNA helicase domain-containing protein [Paracoccus
            denitrificans PD1222]
 gi|119375285|gb|ABL70878.1| UvrD-like DNA helicase, C-terminal domain [Paracoccus denitrificans
            PD1222]
          Length = 1124

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 224/966 (23%), Positives = 397/966 (41%), Gaps = 55/966 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    GL+  E  + +  + +       + +   +   +        K A  L   +  Q
Sbjct: 198  LWAACGLAPGEDMQSLLAECFA----AGATVIAALVPHLLKSGANDQKAAAKLAPGNWVQ 253

Query: 61   CIEERFSLLSSFFLTQKFTPQ------KNIITQEINK-KSPDLKEKLKKSQDEFIKIRDR 113
                  ++L S  LT     +       +  T+ +      +L + L    +     R R
Sbjct: 254  PGPAELAILESVLLTGASAKEPFTAKYDSFPTKALRNGPCAELLDDLAILMERVEAARPR 313

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                   + TLA           Y   K  +  LDF+DLI  T  LL +  ++ W+ +++
Sbjct: 314  RIALAHAERTLALNRFGHAFLNRYRAQKAAHGRLDFDDLIDRTARLLSENSMAQWVLFRL 373

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            D  I+HIL+DE QDTS  QW+VI  LT++F  G+      R+LF VGD KQSIYSF GA+
Sbjct: 374  DGGIDHILVDEAQDTSPAQWQVIERLTDEFTSGQGARDQTRSLFVVGDPKQSIYSFQGAD 433

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                   +    +      +   ++EL  SFRS+  IL +VD+VF+              
Sbjct: 434  IAVFEARRTGFAQAFDAVQEPMQVLELRHSFRSSTAILALVDQVFAGDAARG-----LGD 488

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +HR+ R    G V LW  +         P+   WT   D   + S    LAR +A  +
Sbjct: 489  PPQHRAFRTDMPGRVDLWPAIPKPEK----PEPGDWTDPVDLPAENSETVQLARAVARAV 544

Query: 354  SNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
              M+G     +  G+ R I+A D+L+LV++R +  L   +   LK    + V G DR  L
Sbjct: 545  GEMLGQPIFDAKTGRLRRIRAGDVLILVQRRSE--LFAEIIAALKA-ANLPVAGADRLKL 601

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
               +A++D+ AL   + + EDDLS    L+SPLF+ SE++++++   R   + ++  +++
Sbjct: 602  AGEMAVQDIRALLSVLATPEDDLSLAACLRSPLFDLSEEELYRLAAGRKRGQYLWRRLRE 661

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
              +      +H ++ + +L+    F  P+D    +L    GR++ ++R G E  D +DE 
Sbjct: 662  SHH------RHAVEVLADLMGQTGFMRPYDLIQRLLIRHGGRERLVARLGPEAQDGIDEL 715

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE---VRIMTVHTAKGLESPVVF 589
            L+  L  E +   SL   +  L      ++R   +  +    +R+MTVH +KGLESP+V 
Sbjct: 716  LSQALSYESSETPSLTGFLVWLTGDDVEVRRQPGSAGDGEGLIRVMTVHGSKGLESPIVI 775

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            + D   +    +        P L    G+ +W  +   R + V +L     +   +E  R
Sbjct: 776  MPDAAKRKPPRE-------APVLPGPDGLSLWRGRKGERPDPVEELAAMQTERQLQERKR 828

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK-KIKLTNSINKDE 708
            LLYVG+TRA   LI+        E  + + +W+ MV       +  + ++          
Sbjct: 829  LLYVGLTRAESWLIVAAA----GETGAGEDSWHAMVEAGMGRADLTETRLPAPWGGEIRR 884

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                +W    P+    ER    +        P  L +P      +   +  + +      
Sbjct: 885  LSFGDWPETAPDAVLAERPLPAE--------PDWLRAPPPPAPGKVRPVAATALGGAKVI 936

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-YCTKNAKLWPAKEYKNLLLS 827
                          G  +H LL+ +                      L    E   LL  
Sbjct: 937  GAAGEGDAEAAMLFGTRLHLLLEHLPGRDPADWPELARDVLADAEGGLPGPNELAALLTE 996

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI-IISGRIDQISISQQNIFIFEYKTH 886
               ++E P +    +    +EV     +  P   I  ++G +D++ +    I   +YK++
Sbjct: 997  ARAVIEAPDLAQVFALSDTAEVLAEVALAAPVPGIGTMTGAVDRLVVEPGRILAVDYKSN 1056

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              VP   + +P   + Q++ Y   L+  +P   +   +++ +   +  +P + L++  A 
Sbjct: 1057 REVPDTPDAVPLGILRQMAAYRAALRLIWPAIRVEVAVLWTASRSLMALPDDLLDRVMAG 1116

Query: 947  ISTKIP 952
            +    P
Sbjct: 1117 LDPNRP 1122


>gi|114568640|ref|YP_755320.1| DNA helicase/exodeoxyribonuclease V A [Maricaulis maris MCS10]
 gi|114339102|gb|ABI64382.1| DNA helicase/exodeoxyribonuclease V, subunit A [Maricaulis maris
            MCS10]
          Length = 1183

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 246/978 (25%), Positives = 424/978 (43%), Gaps = 53/978 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L     L        + +D   +     +++       +  G  T + + +T++ A    
Sbjct: 222  LWAVLELPEGSHAAALKQDA--MAAMPRTEVEAASHALIHEGAKTDVTRGETIRVALAAG 279

Query: 61   CIEERFSLLSSFFLTQ--KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               + F    + F T+    T   ++ T+ I+ + P +   L+   D    +RD      
Sbjct: 280  DPAQAFDAYLAAFYTKGGTGTRAASLATKTISDRFPHVLSLLEAEADRLDALRDMIKRAD 339

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEI 177
            + +++  +L +       Y EA ++   LDF+DLI     LL  +   S W+ YK+D ++
Sbjct: 340  IARASAVALRIVDDFTRAYSEALEQARALDFDDLIRLAGLLLAPENPFSGWVGYKLDGQL 399

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             H LIDE QDT+  QW++IR LT +FF G     + RTLF VGDEKQSIYSF GAEP R 
Sbjct: 400  AHALIDEAQDTAPRQWDMIRGLTAEFFAGAGAQETGRTLFVVGDEKQSIYSFQGAEPARF 459

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS------ 291
            + E       A      F    L +SFRS  +ILT VD+ F     A  +   +      
Sbjct: 460  IEEGDRIAASAAAVELPFERPGLDVSFRSAPEILTAVDQAFEAKRPALEMKFVAGATDLP 519

Query: 292  -TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                  HR++R    G V++W  +     +    ++ S     D   + SS  +LA+ +A
Sbjct: 520  FARYQGHRAARSHTPGCVEIWPAIPKPEKT----EEGSIFDPVDLRARGSSRDVLAQTVA 575

Query: 351  YTISNMIGTDTIFSNGK-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              I++MI         K     +R ++  DI +LV +R        + R LK    + V 
Sbjct: 576  GEIADMISRGDAVWEEKGGQFTQRPVRPSDIAILVWRRTGG-FFEEVIRQLKL-AGVPVA 633

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF--------NFSEDDIFKIC 457
            G DR +L D  A+KD++ALGRF ++  DDL+   +L+SPLF           E  ++ + 
Sbjct: 634  GADRMVLRDQTAVKDMLALGRFAMTSGDDLALAEVLRSPLFDPVDPAKAGIDEQALYDLA 693

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA-----KK 512
              R + +               +F      +  L   A     +DFFT  L A     + 
Sbjct: 694  RSRTDLKRRGTLWNALFTSEDPRFADARSALSALRDQADKSRLYDFFTGFLNARTPTGET 753

Query: 513  GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
               +  +R G E  D L EFL   L++E+    +L   I+ +E     IKR  S + +EV
Sbjct: 754  RWARMFARLGEEARDPLQEFLARALQHEREEGGALASFIARIEGEDVQIKREMSPDRDEV 813

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            ++MTVH +KGLE PV+ L DT     + K                  +W  +     + V
Sbjct: 814  QVMTVHASKGLERPVIILPDTTRSPLTGKTTPIFAQTDCG------LLWSQRKDDDTDAV 867

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS-NTSNEKKSNQRTWYDMVYDSFHN 691
            + L +  +     E+ RLLYV +TRA D+LI+C       +  +    +WY  + +++  
Sbjct: 868  AALRQQSENRQLAEHGRLLYVALTRARDRLIVCGWRQGQGHPGRIADDSWYTQLAEAWQG 927

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            +E +      + + +D      +        P+      +    +  +P         + 
Sbjct: 928  EEWMPFETPVSRLVEDAEPGLRFG-----PAPVALGAVSEAGAGDTSLPAWARLAAPAEG 982

Query: 752  NEPYILNPSTI--DTKGKTNLESLLSDNQT--FNRGLIIHKLLQVIFTLPEHKRKNFITS 807
             +     PS++  D   +  + S L+D     F RG +IHKLLQ +  LP  +R+     
Sbjct: 983  GQILGAAPSSLLADADSEPAVLSPLADPGGHRFRRGDVIHKLLQTLPDLPSDRREAAGQR 1042

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGR 867
            +           +   +L     +L++P         S +EV++ G+      ++II G+
Sbjct: 1043 FLAAQ-SDIAESDRAQILTETLGILDHPDFAPLFGPGSRAEVALVGQAPGLPANMIIRGQ 1101

Query: 868  IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            +D++ ++   + I +YKT+   P ++  +   ++ Q++ Y  +L+  +P KS+ C L++ 
Sbjct: 1102 VDRLVVTGDEVLIIDYKTNRPPPADVAAVAKVYLGQMATYRALLRAVHPGKSVRCALLWT 1161

Query: 928  SEPKVFIIPQNKLNKAFA 945
               ++  +P   L+  F 
Sbjct: 1162 DAARLMELPDAVLDTIFD 1179


>gi|254488041|ref|ZP_05101246.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101]
 gi|214044910|gb|EEB85548.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101]
          Length = 1125

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 234/958 (24%), Positives = 399/958 (41%), Gaps = 68/958 (7%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
            FG   N S E I   ++      +  + + +   +E G     K A  LQ   +      
Sbjct: 213  FGQPANLSEETIASSVFLGSEQSI--LAEMIPPMIEKGGL-DGKAAIKLQTLDKM--DIS 267

Query: 65   RFSLLSSFFLTQKFT------PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               +L   FLT              + T+   K    L  ++          RD     +
Sbjct: 268  ALPVLEDVFLTGAGANNPFTAKIGAVPTKPTQKILSHLMPQIDDLMARVESARDARLALR 327

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              + TL     A      Y   K+K   LDF+DLI+   +LL    V+AW+ Y+ID  I+
Sbjct: 328  AAQKTLVLHQFADAFLKRYALEKQKRGWLDFDDLILKARNLLTNPAVAAWVLYRIDGGID 387

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL+DE QDTS  QW+VI  L ++F+ G        RTLF VGD+KQSIYSF GA+P+  
Sbjct: 388  HILVDEAQDTSPRQWDVIERLADEFYSGDGAREDDARTLFVVGDKKQSIYSFQGADPREF 447

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              ++ + +++   AGQ F    L  SFRS++ IL +VD  F+   +A            H
Sbjct: 448  DHKQALFEQKILEAGQIFQRRSLDYSFRSSSAILQLVDTSFAPHASAGF-----QADTTH 502

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            ++ +    G V LW  V    D+        W+   D   +     ILA +IA  I  ++
Sbjct: 503  KAFKSALPGRVDLWPLVAKSDDADDRE----WSDPVDQKSEHHHTVILADQIARQIKTLV 558

Query: 358  GTDTIFSNG-------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              D             ++R I+A D L+LV++R D  L + + R  K    + + G DR 
Sbjct: 559  EGDHYIPVDGDSAGVFERRRIRAGDFLILVQRRSD--LFSEIIRACKT-AGLPIAGADRL 615

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             +   LA+KDL AL  F+ + ED LS    LKSPLF ++E  +F +   R E   +++ +
Sbjct: 616  KVGAELAVKDLAALLSFLATPEDSLSLATALKSPLFGWTEQMLFTLSHYRSED-HLWQAL 674

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
            +       ++    +  + +L     +  P+D    IL   KGR+ F++R G E  D ++
Sbjct: 675  RS-----STEHPETVSILKDLRAQVDYLRPYDLIERILTRHKGRRNFLARLGPEAEDGIN 729

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              L   L  E+ +  SL   +  ++     IKR      +++R+MTVH AKGLE+P+V L
Sbjct: 730  AMLAQALSYERGAIPSLTGFLVWMQTDDLEIKRQIDNASDQIRVMTVHGAKGLEAPIVIL 789

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
             DTG +         + I   +      P+W        + +   +   K+    E  RL
Sbjct: 790  PDTGKRP--------LVIRDEIIKVDDTPVWKLSDADMPSAMRAALDERKEREMNERLRL 841

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV MTRA   LI+        +   ++ +WY M+  +                   +  
Sbjct: 842  LYVAMTRAEKWLIVAAA----GDLPKDESSWYQMIGAAMGQAGAEPV---------GQTG 888

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
               +     +  P+  +  I  +     +      P+          +PS +        
Sbjct: 889  VLRFQHGDWDGLPIRAKAQIPHVTPV--LEPIFDQPVPAIPVREKTTSPSDLGGAKALAG 946

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
            E  L++    + G ++H++L+ +  +   +            +  + A   +  L     
Sbjct: 947  EDGLAEEDAKSYGSLVHQMLETLPLMQSDRWDTV----LKTLSDGYDAGVARAALDEAVA 1002

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
            L++N  +      D+ +EV ++  I        I G ID++ +++ ++   +YKT+  VP
Sbjct: 1003 LMQNADIRHIFDADALAEVPITATIADK----RIHGTIDRLLVTESSVLAIDYKTNRVVP 1058

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
               E  P   + Q+  Y   L+  +P+  +   +++     +  +P + +  A     
Sbjct: 1059 HTTEACPEGLLRQMGAYAAALRQVFPDHDIRTAILWTRTATLMALPDDLITNALTRAL 1116


>gi|258543653|ref|YP_003189086.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256634731|dbj|BAI00707.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256637787|dbj|BAI03756.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03]
 gi|256640841|dbj|BAI06803.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07]
 gi|256643896|dbj|BAI09851.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22]
 gi|256646951|dbj|BAI12899.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26]
 gi|256650004|dbj|BAI15945.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32]
 gi|256652994|dbj|BAI18928.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656048|dbj|BAI21975.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12]
          Length = 1190

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/979 (24%), Positives = 452/979 (46%), Gaps = 51/979 (5%)

Query: 1    LKNRFGLSLN----ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
            L    GLS +     + E + K     P     ++ +   +  E G+  I + A +L   
Sbjct: 233  LCQILGLSPDILHGSTSEFLEKSCTNFPEE--QNLREGFQILSEEGSEAIKRNAFSLLDW 290

Query: 57   SQTQCIEER--FSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
                  E    +S+  + FLT++   +   +I++++++K  D+   ++K  +   K+ + 
Sbjct: 291  LALPASERAAQWSVWRNGFLTKEGKLRSVGLISKKLSEKYSDISLYIQKESERISKVEEH 350

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                K+ +   A L +A  +++ Y   K ++  ++++DLI     LL++   + W+ YK+
Sbjct: 351  LRARKLAEMGSALLKMAAAVSSLYTTQKARHGQIEYDDLIQRALGLLREPGAA-WVMYKL 409

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS---SPRTLFAVGDEKQSIYSFH 230
            D  I+H+L+DEVQDTS  QW +   LTE+FF G    S    PRT+FAVGD KQSIY F 
Sbjct: 410  DGGIDHLLLDEVQDTSPEQWRIAGDLTEEFFAGLGGRSEDEPPRTIFAVGDYKQSIYGFQ 469

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+P      ++  +KR  +A   +   EL +SFRSTA +L +VD VF+ PE A+G+ E+
Sbjct: 470  GADPDSFREWRQKFKKRVQDAHLLWREPELTVSFRSTAPVLKLVDAVFADPEAAKGVVEE 529

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                + H ++R G+ G V+LW  V ++ +         W     +  ++S    LA  +A
Sbjct: 530  PGQIMEHITARPGEGGRVELWPLVEAEKEED---IISPWEPAQGNATRQSPRQKLADAVA 586

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              I   +    +      + +   D+LVLV +R  +P +  L R LK  + I VV   R 
Sbjct: 587  GYIFRQLNQKPLSGQ---KPLTPGDVLVLVPRR--SPFVGMLVRALK-GHNIPVVTLVRT 640

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             L +HLA++D+++L   +L  +DDL+  C+L SPL   S++ +  +   R + E ++  +
Sbjct: 641  GLAEHLAVQDMLSLCAALLLPQDDLTLACVLTSPLGGVSDNSLMALAAGREKGEPLWSAL 700

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
            ++  +   S ++    +++ L     + +P++F +  LG    R +F++R G E  + +D
Sbjct: 701  RER-HAEQSDWKQAWNFLNGLFRQVDYLTPYEFLSAALGPGGARARFLARLGPEAAEPID 759

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            E L+  +R +     SLQ  +  +     T+KR   A  + VRIMT H +KGL++ +V L
Sbjct: 760  ELLSAAIRYQDQHPPSLQGFLHWMRHSEETVKREAEAGGDSVRIMTAHGSKGLQARLVIL 819

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
             DT       +  +++        +  +P+++P++     +   L   ++    EEYNRL
Sbjct: 820  PDTVGLP---RFEERLFWAHDKKQNIDVPLYVPRNALSVGLTRSLKDVMRSRVVEEYNRL 876

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS-----IN 705
            LYV +TRA+D+L++C        +     +WY+     F      +            + 
Sbjct: 877  LYVALTRAADRLVVCGWKP---GRNVPAESWYERCRIGFEKAGATEIDFQEGGWSGSMLL 933

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDE-QKIPKKLFSPIKNDINEPYILNPSTIDT 764
             +E    E +      T +E+ E    L       P    +  + +      L PS  D 
Sbjct: 934  LEETPQEEVNPKKSVPTSVEKSEDTALLPQWMGTAPLWKPTLPEAESPLARPLAPSKPDD 993

Query: 765  KGKTNLES------------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
                 L                +    F RG ++H LLQ +      ++      +  + 
Sbjct: 994  AMLGPLPPVRSPLDIAAVTPAKAREAAFRRGNLVHSLLQFLPACSAEQQPAMAHQWLARP 1053

Query: 813  AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
            A    + E   L   +  +L  P +       + +E     ++       +I G++D++ 
Sbjct: 1054 ASGLSSHEAAELAQQVIAVLRLPELADLFDPSARAEQ----RLAGVAGGQVIVGQVDRLR 1109

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            +    + + ++KT  H P+ +E  P  ++ Q++ Y  +L+  +P++ +VC+L++   P+ 
Sbjct: 1110 VLPNKVLVCDFKTGRHAPRGVEDTPVLYLRQMAAYRALLQGIWPDRPVVCVLVWTEMPRA 1169

Query: 933  FIIPQNKLNKAFAEISTKI 951
             ++P   L+K    I    
Sbjct: 1170 DVLPDALLDKYAPGILPAA 1188


>gi|158422338|ref|YP_001523630.1| putative exonuclease V [Azorhizobium caulinodans ORS 571]
 gi|158329227|dbj|BAF86712.1| putative exonuclease V [Azorhizobium caulinodans ORS 571]
          Length = 1171

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 244/949 (25%), Positives = 427/949 (44%), Gaps = 32/949 (3%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
               G++   +   I +++   P+   +      ++ + +      K+A  L+ A + +  
Sbjct: 233  AVLGVAPGTTAADIEREMLDSPHLPQARWPDIEAVYLTSDKANDRKRAAALRAAIEAKDE 292

Query: 63   EERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             ER +     F      P+  K+++T+ +    P + EKL+  +D  + +       +  
Sbjct: 293  AERLAAFRDLFFKADGDPRSDKDLLTKGLRDGFPHIAEKLEAERDRLVALTQTLRAARAL 352

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + T A+L L       Y   K    +LDF+DLI  T ++L +   ++++ YK+D+ I+H+
Sbjct: 353  ERTEAALALGAEACRRYTAEKAARGLLDFDDLIDRTAEMLGRVP-ASFVHYKLDRGIDHV 411

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            L+DE QDTS  QW V+R L  DFF G+       RTLF VGDEKQSI+SF GA+P+    
Sbjct: 412  LVDEAQDTSPEQWRVVRGLVSDFFSGEGAREGVKRTLFVVGDEKQSIFSFQGADPRAFGD 471

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +   Q+      + F  + LP SFRS   +L  VD +F   E + GL+ D+     H +
Sbjct: 472  MRLAFQR--EAGQEDFRQVSLPHSFRSAPGVLEAVDAIFQRAEASAGLTIDNVAP-PHAA 528

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             R      V+LW  VV     + +     W    D +  +   S LA RIA  +   I  
Sbjct: 529  IRADAPSLVELWPTVVPAAKVKVD----DWRRPLDEIAGDDPVSRLAERIASFVRTGIAQ 584

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK-NDYKISVVGNDRFILTDHLAI 418
                 +   R ++A+D+LVLVR+R    L   + R LK     + V G DR ++ +H+A 
Sbjct: 585  RLAIPSRGGRPMRAQDVLVLVRRR--GRLFEAVIRALKEAGGGVDVAGADRLVVAEHIAA 642

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             DLMALG  +LS +DDL+   +LKSPLF  ++DD+ ++C +R           +  +   
Sbjct: 643  LDLMALGDALLSPDDDLALASVLKSPLFGLTDDDLLRLCPRRE---------GRLLDVVT 693

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            +    + + +      A+   P DF+  +LG   GR+  ++R G E  DVLDEF+     
Sbjct: 694  TGDGSIAERLTRWRGEARELRPFDFYARVLGRDGGRRAMLARLGPEAADVLDEFMALART 753

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E    ++L   ++ L +     KR   +  +EVR+MTVH AKGLE+P+V L DT     
Sbjct: 754  YESLEPATLPGFLAFLRRGGAETKRDMESGRDEVRVMTVHGAKGLEAPIVILADTVD--L 811

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                     +     D   +P+  P+       ++     +     EEY RLLYV +TRA
Sbjct: 812  PKARTSGGLLHVPTADGATVPVLAPRKPEDPPSLAAARAAVTARELEEYRRLLYVALTRA 871

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             D LI+C     +  K       +      ++       I+    +    W         
Sbjct: 872  EDALIVCGAETRAAAKDKT----HARPAGCWYELVHAALIEEAEPVPATGWEGEVLRWRK 927

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
               T    E T+   +            +   +     + PS   +   +          
Sbjct: 928  SGRTLAPAEGTLSAPVAPPPPRPARLEDLPPVLISTEAIRPSR--SAAASFRPPADGSLD 985

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               RG ++H+LL  +  LPE +R+          A+   A     ++  +  +L +  + 
Sbjct: 986  PRVRGDLVHRLLAGLGALPEDQREAAGERLLDHVAEQVAAHHRAEVMAEVMGVLTHAPLA 1045

Query: 839  TAMSCDSYSEVSVSGKINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
               +  S +EV V G++       + ++GR+D+++++   + + ++KT    PQ ++ I 
Sbjct: 1046 GLFAPHSLAEVPVVGRLTAADGRLVTVNGRLDRLAVTGDQLILADFKTDRVPPQSLDRIG 1105

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              ++ QL++Y  +L  ++P +++   L+Y   P++ ++P+ +L +  AE
Sbjct: 1106 EGYVGQLALYAAVLARAFPGRAVEAHLVYTRGPRIHVLPEARLRERLAE 1154


>gi|83950792|ref|ZP_00959525.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
            nubinhibens ISM]
 gi|83838691|gb|EAP77987.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius
            nubinhibens ISM]
          Length = 1112

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 232/960 (24%), Positives = 380/960 (39%), Gaps = 57/960 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    GL        I   ++         +   +   + +G          L       
Sbjct: 202  LCAALGLPAGADRTTITSRVFLGGE---DALLAELITGLRSGGKQDATHCDRLSSLGPL- 257

Query: 61   CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                   +L S FLT     +          T+        ++ +L          RD  
Sbjct: 258  -DITALPVLESVFLTGAAAKEPFTAKLGKFPTKAAQPAIAHIQPQLDDFMRRVEDTRDMR 316

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  + T      A+     Y+ AK    +LDF+DLI  T DLL    V+ W+ +++D
Sbjct: 317  CAVMTLEKTQVLYGFARRFITAYDAAKLHRGLLDFDDLITKTRDLLTDPAVAEWVLFRLD 376

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAE 233
              I+HIL+DE QDTS  QW+VI  L ++   G  + S  PRT+F VGD+KQSIYSF GA+
Sbjct: 377  GGIDHILVDEAQDTSPTQWQVISQLAQELTSGAGSRSDRPRTVFVVGDKKQSIYSFQGAD 436

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+     + +  +R  ++    +   L  SFRS++ +L VVD  F     A       + 
Sbjct: 437  PRAFDEMRDLFDERLAHSNAPLASRVLEHSFRSSSAVLDVVDATFDGAGEAGF-----SA 491

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              RH +      G V LW  +      +  P    W    D   +   A +LA  IA  I
Sbjct: 492  DQRHIAFHDALPGRVDLWPPLDKPERPEDPP----WYMPVDIRAENDPAVLLAEEIAAQI 547

Query: 354  SNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
              M+     I      R +   D+L+LV+ R   P+   +    K    + V G DR  L
Sbjct: 548  DQMVRTRQPIPDGKGWRAVTPGDVLILVQSRTR-PIFNEVIHACKAR-GLPVAGADRLRL 605

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
               LA++D+ AL  F+ + EDDLS    L+SPLF +SE D+F +   R   + +++ ++ 
Sbjct: 606  GGELAVRDICALLSFLATPEDDLSLATALRSPLFGWSEQDLFALAQPRG-GKYLWQALRD 664

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
             A      +   +  + +L     F  P+D    +L    GR + +SR G+E  D +D  
Sbjct: 665  RA----EAYPDTLAILTDLRDQTDFLRPYDLIERVLTRHDGRARLLSRLGHEAEDGIDAL 720

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            L  +L  E+ +  SL   +  +EQ    IKR   +  + +R+MTVH AKGLE+PVV L D
Sbjct: 721  LAQSLAFERAAVDSLTGFLVWMEQDDLEIKRQLDSAGDLIRVMTVHGAKGLEAPVVILPD 780

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T  +              SL   P    W P +      +  L    K + + E +RLLY
Sbjct: 781  TTKRRPPQG--------ASLLASPEAAFWRPLAAELPAALRTLDSDKKDAERAERDRLLY 832

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V MTRA   LI+    +T  ++     +W+  + +          +  T           
Sbjct: 833  VAMTRAEKWLIVAAAGDTGTDRD----SWHSQIAEGMTRVGGSDAMFPTG--QGLRVERG 886

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
            +W    P+          +       +      P          L PS +        E+
Sbjct: 887  DWGATVPDM-------AAESAPVPAPLAAHFAQPAPRGTLPSAPLTPSDLPGPKALAGEA 939

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                +     G ++H LL+ +  L                       +    L   T L+
Sbjct: 940  GRDTDTALREGRLLHALLEHLPALDPSDHPRLAADLARAEEM----PDATPWLSLATALI 995

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
             NP +      D+ +EV +S  +     +    G ID++ I+  ++   ++K++  +P  
Sbjct: 996  ANPDLGQIFGPDTLAEVPLSATLP-ELGNRRFHGIIDRLRIAPDHVLAVDFKSNQVIPAT 1054

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
             E  P   + Q+  Y  +L   YP++ +   +++     +  +P + +  AF   ST +P
Sbjct: 1055 PEATPLGILRQMGAYRAMLSRIYPDRRIDTAILWTHSGSLMPLPHDLVINAFD--STVLP 1112


>gi|182679138|ref|YP_001833284.1| double-strand break repair helicase AddA [Beijerinckia indica subsp.
            indica ATCC 9039]
 gi|182635021|gb|ACB95795.1| double-strand break repair helicase AddA [Beijerinckia indica subsp.
            indica ATCC 9039]
          Length = 1164

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 253/958 (26%), Positives = 429/958 (44%), Gaps = 49/958 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+    L   E+ E I + +          +   ++  + TG+ T  K+A  LQ+A +  
Sbjct: 217  LRKALDLVPGETIETIQRAMIEDGI--APSLWPDIAAFLLTGSATDQKRAAALQKAYEAY 274

Query: 61   CIEE-------------RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
                               +     F T K    K ++T+++ ++ PDL + L   QD  
Sbjct: 275  GSAATGGGRVQEGAQGACLAHYLGIFFTAKEEKAKQLLTKKLAEQRPDLDDLLYAEQDRL 334

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             ++ D+     +   TLA L+L + +   YE +K     LDF DLI  T  LL + D   
Sbjct: 335  DRLADKQKAAAILARTLALLSLTEAIFERYEASKAHQGFLDFNDLIERTKALLFRSDAR- 393

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            W+ YK+D  I+HIL+DE QDTS  QW+++  +T DF  G ++    RT FAVGDEKQSI+
Sbjct: 394  WVLYKLDAGIDHILVDEAQDTSEAQWKILEEMTGDFASGLSSRVDTRTFFAVGDEKQSIF 453

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            SF GA P    + +R    R     + F+ + L  SFRS   IL  VD++F    + QGL
Sbjct: 454  SFQGAAPHMFDQMRRRFNARFDAGEKAFNHVRLTDSFRSVPGILETVDQIFDHAGHYQGL 513

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
               +   + H + +    G V+LW  V              WT   D   +    +I+A 
Sbjct: 514  VAANDPWMPHTALKAQLPGLVELWPLVGPSETED----IRDWTLPLDFPDEHDPPNIVAW 569

Query: 348  RIAYTISNMI---GTDTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
            R+A  I++++     + ++   +  R I+A DIL+LVR R   P    + R LK   +I 
Sbjct: 570  RVAQKIAHLLTDRAHEHVYDEKQGLRPIRAGDILILVRSR--GPFFAAIIRALK-QLQIP 626

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
            V G DR  +  H+A+ DL+A GR  L  +DDL+  C+LKSPL   +++D+  +       
Sbjct: 627  VAGADRLAILQHIAVMDLIAAGRAALLPQDDLTLACVLKSPLIGLTDEDLIAL--APGRP 684

Query: 464  ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
             ++++           +       +           P  F+  +LG   GR+   +R G 
Sbjct: 685  ASLFDA---LRQSEDPRHAAAAARLDLWHQRIG-LPPFTFYAQLLGTDGGRRDLEARLGP 740

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            E  D +DEFLN TL++E++S  SL   ++EL+   P+++R      + VR+MTVH AKGL
Sbjct: 741  EAADAIDEFLNLTLQHERDSTPSLVAFLAELDNRDPSVRRDMETGADLVRVMTVHAAKGL 800

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E+ +VFL DT ++  S  H   +  + +   D  I  W          ++   +  ++  
Sbjct: 801  EAKIVFLPDTCAKA-SGSHDPLVFSLGTDAHDAQILAWSSGKTKDCAALAKAREISRQGE 859

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            ++E+ RLLYV +TRA ++L I        +K     +W++M+             ++   
Sbjct: 860  EDEHRRLLYVALTRAEERLYITGFH---GKKGPGNGSWHEMI---DAALLGSAMEEIPAF 913

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
             +  E +    S            E   +  ++  +P  L      +      L PS+  
Sbjct: 914  WDPAENVRRRLSPGSLSPDDTHSREEEAKTDNKHLLPSWLVEAPPPEAEARPPLRPSSAL 973

Query: 764  TKGKTNLESLLSD------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                   E  +             RG +IH LLQ + ++    R+     +    A+   
Sbjct: 974  AAADGLDEDFMPTAATPANLAALQRGRLIHLLLQYLPSITPSHRQQAAMGFLGIKARYLD 1033

Query: 818  AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII-ISGRIDQISISQQ 876
             K +  L      ++E+P +       S +EV+V+G I+      + ++GRID+I  + +
Sbjct: 1034 GKTHALLTAEALTIIEDPKLRGLYLPRSLAEVAVAGTISLGAGRTLSVNGRIDRIGETDE 1093

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
             + + +YKT           P T++ Q+++Y  +L   +P+K +  LLI+ +   +  
Sbjct: 1094 AVLLADYKTGAMPRNG--RTPETYLTQMALYRAVLTPLWPDKPIRVLLIWTASASIQE 1149


>gi|84685773|ref|ZP_01013669.1| Helicase, UvrD/Rep family protein [Maritimibacter alkaliphilus
            HTCC2654]
 gi|84665866|gb|EAQ12340.1| Helicase, UvrD/Rep family protein [Rhodobacterales bacterium
            HTCC2654]
          Length = 1119

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 245/941 (26%), Positives = 395/941 (41%), Gaps = 50/941 (5%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            +  GL  +     +   ++  P F+ +   +     +   + T++  AQ L         
Sbjct: 206  DELGLPQDFKLVDVLSQVF-TPGFKSAI--QSAPPILSQHSSTMVTLAQKLAGIDTVSPS 262

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            +  F  L+S  LTQ  T +KN++T+       D  E L    +      DR     +   
Sbjct: 263  QSDFDALASALLTQSGTVRKNLLTKPAIADLGDTAETLLALAEVVETEVDRVKALAVIDR 322

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            T+A    A      YEE K +N  LDF+DLI+  + LL   DV+ W+ +++D  I+HIL+
Sbjct: 323  TVALHDFAHPFVRMYEERKARNGWLDFDDLILRASALLNASDVAQWVLFRLDGGIDHILV 382

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-TLFAVGDEKQSIYSFHGAEPKRVLREK 241
            DE QDTS  QW VI SL  +F  G+  H+    ++F VGD KQSIYSF GA+P      +
Sbjct: 383  DEAQDTSPSQWRVIDSLAREFMSGEGAHADREWSIFVVGDPKQSIYSFQGADPDEFASMR 442

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                ++     +    + L  SFRS+  ILT VD      +   G      T   HR+  
Sbjct: 443  DAFDEKLRQIERPLQQMPLEYSFRSSPAILTAVDVTLDDVDGLGG------TKPHHRAFH 496

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
              + G V LW  +    + +  P    W    D          LA  IA  I+ MI  + 
Sbjct: 497  GDRPGRVDLWPAIEPVKEDEPRP----WDDPLDVAAPTDHTVQLAENIAGEIARMIEEEH 552

Query: 362  IFSNGK----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
            + +  K     R +   DIL+LV++R D  L   L R  K+   + + G DR  +   +A
Sbjct: 553  VPATEKGETGFRPVVPGDILILVQRRSD--LFHHLIRACKSR-GLPIAGADRLRIGGEMA 609

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            +KDL AL  F+ + ED+LS   +L+SPLF  SED+++++   R     ++  +    +  
Sbjct: 610  VKDLTALLSFLATPEDNLSLASVLRSPLFGLSEDELYRLAYGRE--GYLWRALWDSGH-- 665

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                + V++ + +L   A F  P+D    +L    GR+  + R G E  D +D  L   L
Sbjct: 666  ----RRVVEALSDLRDQADFLRPYDLIDRVLTRHDGRRLLLGRLGAEAEDGIDAMLAQAL 721

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              E+    SL   ++ L+     IKR   ++  E+R+MTVH AKGLESP+V L DT  + 
Sbjct: 722  AYERVEVPSLTGFLTWLDTEDVEIKRQMDSDAREIRVMTVHGAKGLESPIVILPDTTKRP 781

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                    +  +  L       +W P +    ++++   +  +    EE  RLLYV MTR
Sbjct: 782  --------VRDLSDLVVLENNVVWRPAAPDMPSVLALKKEEARTKGAEERMRLLYVAMTR 833

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A   LI+    +   E      +W+ +V D     + V +   + +              
Sbjct: 834  AESWLIVAGAGDVGKEAS---DSWHGLVRDGLTKLDAVPRGFPSGTGG--------LRFQ 882

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-SLLSD 776
              +    ER         E   P        +    P  ++PS +            L  
Sbjct: 883  VGDWPAGERRNVTADADREPDPPDWSLVAAPHRDPAPKPISPSDLKGAKVVPGAVEGLDG 942

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
            +    RG  IH+LL+ + T P         +            E   LL   T +L++P 
Sbjct: 943  DAAKRRGRQIHRLLEFLPTYPREDWPATARALLAFGEDAASDAELAELLAEATAVLDSPA 1002

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            +         SEV ++G      +   + G ID + I    +   ++K++   P   E I
Sbjct: 1003 LAPLFERGVLSEVEITGPAGSSGEKR-LHGIIDLLVIEPDRVLAIDFKSNLTEPDAAEAI 1061

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
            P   +AQL  YE  L   YP++ +   +++     +  +P 
Sbjct: 1062 PEGILAQLGAYESALSAIYPDRRIESAVLWTRSATLMPVPP 1102


>gi|84514936|ref|ZP_01002299.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella vestfoldensis
            SKA53]
 gi|84511095|gb|EAQ07549.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella vestfoldensis
            SKA53]
          Length = 1113

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/964 (24%), Positives = 407/964 (42%), Gaps = 71/964 (7%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ-ASQT 59
            +     L    + + +   +            + +     TG+ T  K A+ L+  A+  
Sbjct: 207  ICRTLHLDPAMTVQTLVLRVLDADAIAA---LRQLQQICATGSVTDRKAAEKLRAVAADG 263

Query: 60   QCIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
                    LL   FL              +  T+ + +  P+L   +    +     R  
Sbjct: 264  TARLSDLQLLEGVFLFGDSAKDPFGPKIGSFPTKALREAHPELIADIDILMELVAGARQD 323

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                     TLA     +     YE  K     LDF+DLI     LL    V+ W+ +++
Sbjct: 324  RMALAALDRTLALYAFGRAFVPAYEARKLAMGSLDFDDLISKARALLTDPAVAQWVLFRL 383

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGA 232
            D  I+H+L+DE QDTS  QW+V+ +LT++F  G  +  +  RT+F VGD+KQSIYSF GA
Sbjct: 384  DGGIDHVLVDEAQDTSPAQWDVVETLTQEFATGAGSRPNRERTVFVVGDKKQSIYSFQGA 443

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P    + K   +      G+ F    L  SFRS+  +L+VVD  F+  + A        
Sbjct: 444  DPAAFDKMKAHFRAAHKAIGKPFEATSLDHSFRSSQAVLSVVDATFTGDQAAGM-----D 498

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              + H + +    G V LW  + +       P    W    D          +A+RIA  
Sbjct: 499  DALTHIAFKDRMPGRVDLWPVIEAAKTEDNRP----WYQPVDQPGDADHHVQMAQRIADQ 554

Query: 353  ISNMIGTDTIFSNG------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            IS+MI  +TI          K+R I A D+L+LV++R D  L   + R  K    +++ G
Sbjct: 555  ISHMIAHETIPVEDGNTGTYKRRRITAGDVLILVQRRSD--LFAEIIRACKA-AGLNIAG 611

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             DR  +   LA+KDL AL  F+   EDDLS    L+SPLF +SE D+F +   R + + +
Sbjct: 612  ADRLRVGAELAVKDLAALLSFLALAEDDLSLAAALRSPLFGWSEQDLFTLAHHRGDKKFL 671

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            +E ++K A+         +  +++L   A F  P+D    IL    GR++ ++R G E  
Sbjct: 672  WEALRKSAHH------ETLAVLNDLRGKADFLRPYDLIARILTRHDGRRKLLARLGPEAE 725

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D +D  L+  L  EQ    SL   ++ ++     +KR   +  +++R+MTVH AKGLE+P
Sbjct: 726  DGIDALLSQALAYEQTGVPSLTGFLTWMQTDDLEVKRQMDSQGDKIRVMTVHGAKGLEAP 785

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L +T          +K      +   P   IW   S +    +  L   +     EE
Sbjct: 786  IVILPET--------MTRKKDFKGEILPAPDCVIWKTISAATPASMVTLRDAVLAKQDEE 837

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV MTRA   LII      S +      +WY++V       +    +     + +
Sbjct: 838  RLRLLYVAMTRAEKWLII----GASGDVGEGMESWYNIVAAGMKKRQAGAAMSGDLQVQR 893

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
               + +      P++     +  + +                 DI     ++PS +    
Sbjct: 894  VAHLDWNGLDLVPKDAVTAPDVIVPEFG------------PLPDIARAKTISPSELLGAK 941

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                +    D     RG +IH LL+ +       R     +                L  
Sbjct: 942  VLPGDIAEDDADAKERGTLIHLLLEHLPRATPADRAALGYALV---------PTDTALTD 992

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
            S+ +LL+ P +    + D+ +EV ++  +        I G ID++ ++   +   +YKT+
Sbjct: 993  SVIQLLDQPALAHLWNDDALTEVPITADLPDLG---RIHGTIDRLILTPTTVLAVDYKTN 1049

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              VP +  H P   + Q ++Y   L+  +P++ +   +++ ++ ++  +P+  L++    
Sbjct: 1050 RIVPDQPAHTPLGVLRQQAVYCAALRQVFPDRQITVAILWTAKAQLMDLPETLLHETMTG 1109

Query: 947  ISTK 950
            ++T 
Sbjct: 1110 LATA 1113


>gi|329113820|ref|ZP_08242591.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001]
 gi|326696830|gb|EGE48500.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001]
          Length = 1190

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 237/970 (24%), Positives = 442/970 (45%), Gaps = 51/970 (5%)

Query: 1    LKNRFGLSLN----ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
            L    GLS +     + E + K     P     ++ +   +  + G+  I + A +L   
Sbjct: 233  LCQILGLSPDILHGSTSEFLEKLCSDFPEE--QNLREGFQILSKEGSEAIKRNAFSLLDW 290

Query: 57   SQTQCIEER--FSLLSSFFLTQKFTPQKN-IITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
                  E    +S+  S FLT+    +   +I++++++K  D+   ++K  +   ++ ++
Sbjct: 291  LALPASERARQWSVWQSGFLTKDGKLRSAGLISKKLSEKYSDIALYIQKEGERISRVEEQ 350

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                K+ +   A L +A  +++ Y   K ++  ++++DLI     LL++   + W+ YK+
Sbjct: 351  LRARKLAEMGSALLKMAADVSSLYTTQKARHGQIEYDDLIQRALGLLREPGAA-WVMYKL 409

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS---SPRTLFAVGDEKQSIYSFH 230
            D  I+H+L+DEVQDTS  QW +   LTE+FF G    S    PRT+FAVGD KQSIY F 
Sbjct: 410  DGGIDHLLLDEVQDTSPEQWRIAGDLTEEFFAGLGGRSEEEPPRTIFAVGDYKQSIYGFQ 469

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+P      ++  +KR  +A   +   +L +SFRSTA +L +VD+VF+  + A+G+ E+
Sbjct: 470  GADPDSFREWRQKFKKRVQDAHLLWREPDLTVSFRSTAPVLKLVDEVFAESDAAKGVVEE 529

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                + H ++R G+ G V+LW  V              W     +  ++SS   LA  +A
Sbjct: 530  PGQIMEHITARPGEGGRVELWPLV---ETEDEEDSISPWEPAQGNATRQSSRQKLADAVA 586

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              I   +   ++        + A D+LVLV +R  +P +  L R LK  + I VV   R 
Sbjct: 587  GYIFRQLNKKSLSGK---NPLTAGDVLVLVPRR--SPFVGMLVRALK-GHNIPVVTLVRT 640

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             L +HLA++D+++L   +L  +DDL+  C+L SPL   S+D +  + T R + E ++  +
Sbjct: 641  GLAEHLAVQDMLSLCAALLLPQDDLTLACVLTSPLGGVSDDSLMALATVREKGEPLWSAL 700

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
            ++  +   S ++    +++ L     + +P++  +  LG    R +F++R G E  + +D
Sbjct: 701  RER-HTEQSDWKQAWNFLNGLFRQVDYLTPYELLSAALGPGGARARFLARLGPEAAEPID 759

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            E L+  +R +     SLQ  +  +     T+KR   A  + VRIMT H +KGL++ +V L
Sbjct: 760  ELLSAAIRYQDQHPPSLQGFLHWMRHSEETVKREAEAGGDSVRIMTAHGSKGLQARLVIL 819

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
             DT            +        +  +P+++P++     +   L   ++    EEYNRL
Sbjct: 820  PDTVGLPRFEDR---LFWAHDKTQNVDVPLYVPRNALSVGLTRSLKDVMRGRVVEEYNRL 876

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV +TRA+D+L++C        +     +WY+     F      +        +    +
Sbjct: 877  LYVALTRAADRLVVCGWKP---GRNVPAESWYERCRVGFEKAGATEVDFQEGGWSGPMLL 933

Query: 711  AYEWSTHHPENTPLEREETIKQ------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
              E     P            +       +     P       + +      L PS  D 
Sbjct: 934  LEETQQEQPHPQKSRPSSVDNRMNVTSLPLWMGTAPLWKPILPEAESPLARPLAPSKPDD 993

Query: 765  KGKTNLES------------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
                 L                +    F RG ++H LLQ +   P  ++      +  + 
Sbjct: 994  TMLGPLPPVRSPLDIAAVTPAKAREAAFRRGNLVHSLLQFLPNCPVEQQPAMAHQWLARP 1053

Query: 813  AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
            A    + E   L   +  +L  P +       + +E     ++       +I G++D++ 
Sbjct: 1054 ASGLSSHEATVLAQQVIAVLRLPELVDLFDPTARAEQ----RLAGVANGQVIVGQVDRLR 1109

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            +    + + ++KT  H P+ ++  P  ++ Q++ Y  +L+  +P++ +VC+L++   P+ 
Sbjct: 1110 VLPNKVLVCDFKTGRHAPRRVQDTPVLYLRQMAAYRALLQGIWPDRPVVCVLVWTEMPRA 1169

Query: 933  FIIPQNKLNK 942
             ++P   L+K
Sbjct: 1170 DVLPDAVLDK 1179


>gi|58039096|ref|YP_191060.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H]
 gi|58001510|gb|AAW60404.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H]
          Length = 1191

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/968 (25%), Positives = 421/968 (43%), Gaps = 48/968 (4%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +     +  +S E +       P     D+   +  +++          + +     T  
Sbjct: 242  RKAL-KAGQQSLEDLESLACQPPKEN--DLRAGLRDALDVVTDAGRVIVEQMLGWLGTNP 298

Query: 62   IEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E   ++ +   LT++  P+K   I++++  +K   L   L+      + ++    + ++
Sbjct: 299  AERVPAIWAKCLLTKEGKPRKMNGIVSKKAQEKVGYLVPVLEDEAQRLVDLQASLKSARL 358

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                 A L LA  +   ++++K    ++D+ DLI  T +LL+    + W+ YK+D  I+H
Sbjct: 359  VLLNRALLGLAAPMLTAFQDSKSARGLVDYNDLIQETRNLLRDPGAA-WVLYKLDGGIDH 417

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH---SSPRTLFAVGDEKQSIYSFHGAEPKR 236
            +L+DEVQD S +QWE+  +LT +FF G+        PRT+FAVGD KQSIY F GA+P+ 
Sbjct: 418  LLLDEVQDNSGLQWEIAGALTSEFFAGEGAWDMGPRPRTIFAVGDYKQSIYGFQGAQPEE 477

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI- 295
              R +     R  NAG  +   EL +SFRS   +L+ VD VFS P  A GL +D   T+ 
Sbjct: 478  FHRWRHEFASRVRNAGLLWRDPELNVSFRSVPPVLSFVDAVFSQPLAAHGLLQDDEKTLR 537

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H S+R GQ G V+LW  V        +     W +   +  Q S+   LA  +A  I  
Sbjct: 538  PHVSARPGQGGRVELWPLVPVVQGEDDDEGLTPWRAPSANTGQRSAPQRLAEALAEWIDQ 597

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             IG   +        + A D+L+LV +R  +P +  L R LK+   + V    R  LT  
Sbjct: 598  QIGRPPLPGQA---PLTAGDVLILVPRR--SPFLRSLIRALKSR-NVPVATLVRVGLTQQ 651

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA- 474
            +A++DLM L   +L  +DDL+   +L SPL   ++D +  + T+   T  +    Q    
Sbjct: 652  VAVRDLMTLCAALLLPQDDLTLASVLTSPLGGLTDDSLMALATRNGTTHALGPKGQPLWT 711

Query: 475  -----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                 +     ++   + +  L     + SP+      LG   GR + + R G E  + +
Sbjct: 712  VLRERHREREDWRAAWEMLSTLYVRVDYASPYRLLAETLGQHGGRTRLLRRLGPEAAEPV 771

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            DE L   LR E     SLQ  +  LE    T KR   +    VR+MTVH +KGL++ +V 
Sbjct: 772  DELLTAALRYEGLHPPSLQGFLHWLEASEITSKREAESELGAVRVMTVHGSKGLQARLVV 831

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            + DT S+            +        +P+W+P+     ++ + L +   +  + E NR
Sbjct: 832  MPDTTSKPPPGSD-----FLWEEAGALELPLWVPKKDMGTDVTTALSERDAEKARAESNR 886

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV +TRASD L+IC       +++    +WY      F      +   +      +  
Sbjct: 887  LLYVALTRASDWLVICGA---GAKREPADTSWYRQCEAGFRQLANARSEPMDLGWEGERL 943

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQ--KIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            +  E  T  P        E     + +   + P        ++      L PS  D    
Sbjct: 944  VLEEARTLAPVAFQSGSAEPPCATLPDWMGRAPDWKPVITPHEDAMTRPLAPSRPDGAEF 1003

Query: 768  TNLESLLS------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
              L +  S              Q   RG +IH+LLQ++      +R+     + ++ A  
Sbjct: 1004 GELPAARSPLELLAGRPTPVREQAMRRGTMIHRLLQLLPETLPAEREAVALRWLSRRALG 1063

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
                E K L   +  +L +P +    +  S +E  +SG         ++ G++D++ I  
Sbjct: 1064 LTEPEIKRLAEQVLGVLSHPDLAPLFALGSRAEQPISGV----SAGRVVLGQVDRLRIGD 1119

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              I++ +YKT+ +     E  P  ++ Q++ Y  +L   +P   + C L++   P V  +
Sbjct: 1120 GQIWVCDYKTNRNPHLRAERTPVAYLRQMAAYRAVLAQLHPGYDIHCSLVWTEGPVVVTL 1179

Query: 936  PQNKLNKA 943
            P   L++ 
Sbjct: 1180 PSPLLDQV 1187


>gi|163745129|ref|ZP_02152489.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45]
 gi|161381947|gb|EDQ06356.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45]
          Length = 1123

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 225/957 (23%), Positives = 403/957 (42%), Gaps = 67/957 (7%)

Query: 4    RFGLSLNE-SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
                  ++ + + I   ++       + +   +   +        K    LQ+  +    
Sbjct: 211  ALFAQPDDLTEDKIAGSVFLGSE---ATMVAEIIPHLLAKGGNDGKAGAALQEIERY--D 265

Query: 63   EERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                  L +  LT             +  T+   K   +   +L++        R+    
Sbjct: 266  LSALPQLENILLTGSGAKAPFTAKIGSFPTKPTQKVIAEQMPQLEQLMQRVEDAREARLA 325

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             K  + +      A    A Y + K+K   LDF+DLI+    LL  + V+AW+ ++ID  
Sbjct: 326  LKAARKSYVLHRFASRFLARYADEKQKRGWLDFDDLILKARALLTDKAVAAWVLFRIDGG 385

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPK 235
            I+HIL+DE QDTS  QW+VI  LT++F+ G    +   RTLF VGD+KQSIYSF GA+P+
Sbjct: 386  IDHILVDEAQDTSPRQWDVIERLTDEFYSGAGARNEVDRTLFVVGDKKQSIYSFQGADPE 445

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
             + R+    +++   AGQ F    L  SFRS++ IL  VD VF          +   T  
Sbjct: 446  ELDRKGATFEQKIGEAGQFFQRRSLAYSFRSSSAILRAVDGVFDPA------IQTGFTND 499

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H + +    G V LW  +    +     ++  WT   D          LA RIA  I  
Sbjct: 500  GHLAFKDRLPGRVDLWPFI----EKAGPDEEGDWTDPVDRRSARHHTVQLAERIARRIKE 555

Query: 356  MIGTDTIFSNGK-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            +   +    +       +R IQ  D L+LV++R  + L + + R  K   ++ + G DR 
Sbjct: 556  LTTEEHYLPDDSKGGLARRRIQPGDFLILVQRR--SALFSEIIRACKA-AELPIAGADRL 612

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             +   LA++DL A+  F+ + +DDLS    LKSPLF +SE D+F +   R E     +++
Sbjct: 613  KVGAELAVRDLAAILSFLATPDDDLSLATALKSPLFGWSEQDLFTLAHYRKE-----DHL 667

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
             +            +  + +L     +  P+D    IL    GR++ ++R G E  D ++
Sbjct: 668  WQALRNQTEAHAATLAVLRDLRAQVDYLRPYDLIERILTRHDGRRKLLARLGPEAEDGIN 727

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              L+  L  E+ +  SL   +  ++     IKR   +  N++R+MTVH AKGLE+P+V L
Sbjct: 728  AMLSQALAYERGAVPSLTGFLQWMQTDDLEIKRQIDSASNQIRVMTVHGAKGLEAPIVIL 787

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
             DTG         + + I   +    G P+W   +      +   +  +K++  +E  RL
Sbjct: 788  PDTG--------RRDVTIKDEIITVDGTPVWKASADDTPQPIRARLDEMKEAALQERLRL 839

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             YV MTRA   LI+      S ++ S  +     +                    +    
Sbjct: 840  FYVAMTRAEKWLIVAAAGELSKDESSWYQITAAALARLQA---------------EPLGD 884

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                     +   L   ET ++++   ++      P      E   L+PS +        
Sbjct: 885  DGTLRYQQGDWDALNIVETPEEIVTTPQLDPIFARPAPAPSGEAKTLSPSDLGGAKALAG 944

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
            E+    +   + G ++H+LL+ +  +    R+     +  + A+    +           
Sbjct: 945  EAGFDMDTALSYGTLVHELLEHLPLMDAEAREI----FLNRLARSHSVEMIARAQEEAEA 1000

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
            +L  P +    +  + +EV V+G +        + G ID++ I++ +I   ++KT+  VP
Sbjct: 1001 VLRTPALAPLFADTTLAEVPVTGSL----GAQRLHGTIDRLVIAEDHILAVDFKTNRVVP 1056

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
               +  P   + Q+  Y  +L+  YP + +   +++ ++P + ++P   +  A   +
Sbjct: 1057 NAPDACPDGLLRQMGAYAHMLRQIYPQRRIETAILWTAKPALMVLPNEIVTNAMRAL 1113


>gi|126738527|ref|ZP_01754232.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            SK209-2-6]
 gi|126720326|gb|EBA17032.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp.
            SK209-2-6]
          Length = 1126

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 234/963 (24%), Positives = 401/963 (41%), Gaps = 72/963 (7%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+ RF L      + + + ++       +++   +   +++G  T  + A  L  AS   
Sbjct: 211  LQERFDLPDGFDRQSLEQSVFLGGE---AEVLAELRSLLQSGGTTDQRAAAKL--ASIDA 265

Query: 61   CIEERFSLLSSFFLTQKFT------PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                  + L S FLT                T+++ + +  L ++++         R + 
Sbjct: 266  PALADLAHLESIFLTGASAAAPFSAKIGKFPTKKLREANLALMDRVEPLMRRVEDARAKR 325

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  + +      A+     YE  K+    LDF+DLI+    LL    V+AW+ Y++D
Sbjct: 326  LALTALRKSWELHQFAQAFLPEYERRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRLD 385

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233
              I+HIL+DE QDTS +QW+VI  L ++F  G+   S   RT+F VGD+KQSIYSF GA+
Sbjct: 386  GGIDHILVDEAQDTSPVQWDVIEKLAQEFTAGEGARSGVERTIFVVGDKKQSIYSFQGAD 445

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P    R +R    R    G       L  SFRS+A IL +VD VF   + A         
Sbjct: 446  PDAFDRMQREFGNRLAETGAGLQNAALEFSFRSSAAILRLVDLVFQGQDAAGF-----PR 500

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               HR+ ++   G V LW  V    D     ++  WT   D   +     ILA RIA  I
Sbjct: 501  DALHRAFKVDLPGRVDLWPVVEKPDDD----EEVDWTDPVDRPGKRHHTVILAERIAQQI 556

Query: 354  SNMIGTDTIFSNG-----------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
             +MI                    ++R + A D L+LV++R +  L + + R  K    +
Sbjct: 557  KDMIDQKVTLPIDGPKGPDGQMTFERRPVHAGDFLILVQRRSE--LFSEIIRACK-KADL 613

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
             + G DR  +   LA+KD+ +L  F+ + ED L+    LKSPLF +SE  +F +  +R  
Sbjct: 614  PIAGADRLKVGAELAVKDIASLLSFLSTPEDSLALAEALKSPLFGWSEQMLFDLAHRRDG 673

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             + ++E ++K      S+F   +  + +L     F  P D    IL   KGRQ+ + R G
Sbjct: 674  KQHLWEALRKR----KSEFPQTMGILDDLRGQTDFLRPFDLIERILTRHKGRQKLLGRLG 729

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
             E  D ++  L+  L  E++   SL   +  ++     IKR   A    VR+M+VH +KG
Sbjct: 730  PEAEDGINALLSQALSYERSDIPSLTGFLVWMQTDDLEIKRQMGAAEGMVRVMSVHGSKG 789

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE+P+V L DT  +               +    G P+W    +   +++       ++ 
Sbjct: 790  LEAPIVILPDTAKRNAPRD--------AEIMVAEGTPLWKLPKEQMPDLLLSARNTAQEK 841

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             Q E  RLLYV +TRA   LI+    + S E  +  +     +  S              
Sbjct: 842  QQNERLRLLYVALTRAEKWLIVGAAGDLSKEGDTWYQRVEAALKSS-------------G 888

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
            +++ +          H +   L   E  + +     +P        + +     ++PS +
Sbjct: 889  AVDHEHPGGTGLRLEHGDWDALPYVEKERSVSALPSLPDVFLQKAPDYLAPAPAVSPSDL 948

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA-KEY 821
                    +  L + +   RG         +  L EH        +  +   L     + 
Sbjct: 949  GGAKALPGDRGLDEEEAKARGT-------RLHLLLEHLPLLPPEQWQERATALLSGVHDQ 1001

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
            K LL   + +L    +    + DS +EV+++  +        + G ID++ I+   +   
Sbjct: 1002 KELLDEASAVLLARDLEHVFAPDSLAEVAITADL----GQHKLYGIIDRLVITSDYVLAV 1057

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
            ++K++   P+     P   + Q+  Y   L   YP+K +   +I+    ++ ++P   + 
Sbjct: 1058 DFKSNATTPKSAGDCPDGLLRQMGAYAHALGQIYPDKEIRTAIIWTRMAQLMMLPHEVVT 1117

Query: 942  KAF 944
             A 
Sbjct: 1118 DAL 1120


>gi|209543463|ref|YP_002275692.1| double-strand break repair helicase AddA [Gluconacetobacter
            diazotrophicus PAl 5]
 gi|209531140|gb|ACI51077.1| double-strand break repair helicase AddA [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1185

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 235/960 (24%), Positives = 418/960 (43%), Gaps = 40/960 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G       + + +    +P      +   + +  E  +  +  KA  +       
Sbjct: 233  LMRVLGTR-GRDADAVRRAACAVP--DEERLRGMLRIVAEQASTAVRAKAVAMLDWMALA 289

Query: 61   CIEER--FSLLSSFFLTQKFTPQKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                   +    +  + Q   P++   +  + ++  P + + L    +  I + +     
Sbjct: 290  PDARAAQWDAWRAALVKQDGEPRRRGGLNAKFDETQPQIGDALLAEAERIIAVDEECRAI 349

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
             + + + A L +A  +   Y E K+   ++D++DLI  T DLLK    + W+ YK+D  I
Sbjct: 350  AILRVSQALLDVAVPVLHRYGERKRGRGLVDYDDLIERTLDLLKDPGAA-WVLYKLDGGI 408

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP---RTLFAVGDEKQSIYSFHGAEP 234
            +H+L+DEVQDTS  QW +   LT +FF G   H      RTLFAVGD KQSIYSF GA+P
Sbjct: 409  DHLLLDEVQDTSPDQWAIAGGLTSEFFAGAGAHDDGAPPRTLFAVGDYKQSIYSFQGADP 468

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                  ++  +++  +AG+ +    L +SFRSTA +L +VD VFS+P+ A+GL E     
Sbjct: 469  AAFRHWRQRFRRQVEDAGRMWKEPALTVSFRSTAPVLRLVDSVFSLPDAARGLVEPGGGV 528

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              H S+R GQ G V+LW         +       W +  ++  Q ++A  LA  +A  I 
Sbjct: 529  PGHLSARPGQGGRVELWPLTPI---DEAGEDANPWAAPRENEGQSTAAQRLADSLAAWIV 585

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
              +             +   D+LVLV +R +   +  L R LK    + V    R  L D
Sbjct: 586  AELRRPPEPGQA---PLTPGDVLVLVPRRSN--FVRALIRALKTQ-DVPVATLVRTGLVD 639

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             +A++DLMAL   +L  +DDL+  C+L SPL   S+D +  +   R +       + +  
Sbjct: 640  QVAVQDLMALCDALLLPQDDLTLACVLTSPLGGVSDDGVMDLAVGRGDRPLW--AVLRDR 697

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
            +     ++     +  L     + SP+   +  LG   GR + ++R G E  + +DE L+
Sbjct: 698  HAERPDWRAAWTMLDALFRRVDYASPYGLLSEALGPLGGRARLLARLGPEAAEPVDELLS 757

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              LR E    +SLQ  +  L     T+KR   A  + VR+MT H AKGL++ +V L DT 
Sbjct: 758  AALRYESLHPASLQGFLHWLRASQETVKREPDAAADMVRVMTAHGAKGLQARLVILPDT- 816

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              V + K    +           +P+W+P+++    +   L + ++ +  EEYNRLLYV 
Sbjct: 817  --VGTAKFDGGLVWARDQPSGLDLPLWVPRAEMGIGVTRALQQTIRAAAIEEYNRLLYVA 874

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            +TRASD+L++C           +        ++    +ER   +    +    E      
Sbjct: 875  LTRASDRLVVCGWQQKRMVTDESWYMLCRRGFEQAGAEERPFDLGWEGTRLVLEEAPARL 934

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
            S              +       + P  + +P   +      L PS  D        ++ 
Sbjct: 935  SGAPAAPRSRPEPPAVALPAWMGRAPDWIATPPSAEAKLLRPLVPSRPDDAPLGPQPAVR 994

Query: 775  SD------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
            S              Q   +G ++H LLQ +   P   R      + ++      A E  
Sbjct: 995  SPLAIARARRPAAREQALRKGQLVHALLQYLPDRPAADRARVARDWLSRTGHGLDAAEQA 1054

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
             +   +  ++++P M       S +E  ++G         +I G++D++ +   ++ + +
Sbjct: 1055 RIAAQVLAVMDDPAMAPLFGPGSRAEQPLAGIA----GGAVIVGQVDRMMVRPGDVLLCD 1110

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            +KT+   P +   +P  ++ Q++ Y  +L   YP++ + C L++  + ++  +P + L +
Sbjct: 1111 FKTNRQPPDDAASVPVLYLRQMASYRALLGALYPDRPVRCTLVWTEDVRIMPLPDSLLAQ 1170


>gi|146278983|ref|YP_001169142.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
            17025]
 gi|145557224|gb|ABP71837.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
            17025]
          Length = 1119

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 232/956 (24%), Positives = 397/956 (41%), Gaps = 66/956 (6%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  +G++     + +   ++        +    ++ ++E G+    K A  L+  S +  
Sbjct: 223  RALYGVTGG--ADELLAQVFLGGE---EEWMPGLTAALEAGSANDQKAAAKLRLLSFSAP 277

Query: 62   IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
                 + L    LT     +       +  T+        L ++L+         R    
Sbjct: 278  TTATLAGLEGVLLTGASAKEPYTAKIGSFPTKATRGALGPLADRLEALMRRVEAARPVRC 337

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                 +        A      YE  K     LDF+DLI     LL    V+ W+ +++D 
Sbjct: 338  CLLAAERARLIHAFAGVFLPLYEARKAARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDG 397

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             I+HIL+DE QDTS  QW+VI  L ++F  G+      RT+F VGD+KQSIYSF GA+  
Sbjct: 398  GIDHILVDEAQDTSPDQWKVIELLAQEFTAGRGAREVERTIFVVGDKKQSIYSFQGADVA 457

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
               R +    +R   A ++   ++L  SFRS+  IL +VD  F          +D    +
Sbjct: 458  AFDRMRAEFGERLAGAERRLEELDLLHSFRSSPTILRLVDLTFDERRR-----QDLGGEV 512

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            RH + R    G  +LW  V    ++   P+ E+W    D +  E  A+ LAR++A  I  
Sbjct: 513  RHIAFRSDMPGRAELWPLV----EAATEPEPENWFDPVDLVSDEHHAARLARQVAARIRA 568

Query: 356  MIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            MI     I   G  R + A D L+LV++R D  +   + R  K + ++ + G DR  L  
Sbjct: 569  MIEEGVQIPQPGGFRPVAAGDFLILVQRRSD--IFGEIIRACK-EARLPIAGADRLKLGA 625

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             LA++DL AL  F+ + EDDLS   +L+SPLF +SE ++F +   R        Y+ +  
Sbjct: 626  ELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEAELFDLAHGRE------GYLWRRL 679

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                +     +  + +L   A F  P D     L    GR++ ++R G E  D +DE L+
Sbjct: 680  REREATHPETVAILRDLRDQADFLRPFDLIERALTRHDGRRRLLARLGEEAEDGIDELLS 739

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L  E+    SL   ++ L+     +KR   A    +R+MTVH +KGLE+P+V L DT 
Sbjct: 740  QALAYERTDVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTA 799

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +    +H +   +      D G  +W   +      ++   +  +     E  RLLYV 
Sbjct: 800  DR-KPREHDEIFTL------DCGARVWKTPAPESPPQIAAAREARRARDAAENLRLLYVA 852

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            MTRA   LI          K  +   W+D++          ++   T  + + +W A   
Sbjct: 853  MTRAQCWLIAAAAG-----KLESGGAWHDLIRQGMEAAGAERRADGTLLLVEGDWPAPAP 907

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                PE                  +P          +  P +L PS +        E+L 
Sbjct: 908  RPAAPEAG-------------RPALPGWARIHAAAPVAAPGLLLPSDLGGAKALPGEALP 954

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
            ++     RG  +H+LL+ +   P                      +  ++L  +  +L  
Sbjct: 955  TEL-ALARGSAVHRLLEHLPLHPPETWDEVARGLL------PDLGDLGDVLEEVRAVLSA 1007

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
              +  A+   +  EV V+ ++        + G ID++ +    +   +YKT+  VP   E
Sbjct: 1008 EDLGAALVPHALIEVQVTAEVA----GRRLFGTIDRLVVDPDRVLAVDYKTNMVVPARPE 1063

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
             +P   + Q+  Y + L   YP++ +   +++     +  +P++ +  A A  +T 
Sbjct: 1064 EVPEGILRQMGAYAEALARIYPDREVETAILWTRTASLMRLPRDIVRSALARATTT 1119


>gi|110677844|ref|YP_680851.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh
            114]
 gi|109453960|gb|ABG30165.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh
            114]
          Length = 1125

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 230/956 (24%), Positives = 385/956 (40%), Gaps = 65/956 (6%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
              F    + + + I   ++      +   +  +      G     K A  L++ S     
Sbjct: 210  ALFDQPADLTAKHIEDQVFLGDEAAL--FDTLIPPMQAKGG-NDAKTAVKLKKISGLN-- 264

Query: 63   EERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                  L   FLT +            + T+       D    L          RD    
Sbjct: 265  FSALPALEEIFLTGRKAKPPFRAKIGTLPTKPTQDVVSDAMPALDDFMCRVETARDARVG 324

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                + T A    A      YEE K     LDF+DLI     LL   DV+AW+ ++ID  
Sbjct: 325  LLAAQKTYALHRFAGSFLPLYEEQKTLRGWLDFDDLIDRARALLSDEDVAAWVLFRIDGG 384

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPK 235
            I+HIL+DE QDTS  QW+VIR L  +F  G+       RT+F VGD+KQSIYSF GA+P+
Sbjct: 385  IDHILVDEAQDTSPAQWDVIRKLAAEFTSGEGARQEVQRTVFVVGDKKQSIYSFQGADPR 444

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
               R +     +   A Q F    L  SFRS + IL VVD+ F    +A   +++     
Sbjct: 445  EFDRMQAEFASKIEAAEQLFQNKTLAFSFRSASAILGVVDRTFDGLTDAGFTTDE----- 499

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            +H + +    G V +W  V    + Q + +  +W    D       + ILA R+A  I  
Sbjct: 500  QHIAFKQTLPGRVDIWPVV----EPQPSEEDRAWHDPIDRKAAHHHSVILAERVATQIKA 555

Query: 356  MIGTDTIFSNGK------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            MI  DTI    +      +R +QA D L+LV++R  + L T + R  KN   + + G DR
Sbjct: 556  MIAHDTIPDEKRSDGKITRRPVQAGDFLILVQRR--SVLFTEIIRACKNK-DLDIAGADR 612

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +   LA++DL AL  F+   ED LS    L+SPLF +SE ++F++   R       ++
Sbjct: 613  LKVGGELAVRDLAALLSFLAVPEDSLSLASTLRSPLFGWSEKELFQLAHHREH-----DH 667

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            + +        +   +K + +L     F  P+D    IL    GR+  ++R G E  D +
Sbjct: 668  LWQALRMRSDAYPETLKVLRDLRANVDFLRPYDLIERILTRHNGRRNLLARLGVEAEDGI 727

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +  L+  L  E+N+  SL   +  +E     IKR   +  N++R+MTVH AKGLE+P+V 
Sbjct: 728  NALLSQALAYERNAVPSLTGFLVWMETDDLEIKRQIDSASNQIRVMTVHGAKGLEAPIVI 787

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L D+G +           +   +      P+W   +      ++  +  +  +   E  R
Sbjct: 788  LPDSGKRNNP--------VRDDIIILDDKPVWKTPANDTPGAMAAALDEIAAAQAAERLR 839

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV +TRA   LI+      S +  +            +   +          ++    
Sbjct: 840  LLYVALTRAEKWLIVAAAGELSKQNDT-----------WYQRVDAAVDAAGARLVDMHGL 888

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                      E  PL        +           +P +  + E   ++PS +       
Sbjct: 889  AVKRHQKGDWEALPLSEANQNTTVQATLDPCFTTRAPARAPLRE--TVSPSDLGGAKALP 946

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
             E+   +      G  +H  L+ +           +              +         
Sbjct: 947  GEAGQDEEAAKAYGTSVHLFLEHLSAADPSDWPALVDVL-----SDNGDPDLLRAASEAK 1001

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
             +L++P +    + DS +EV+V+ +         + G ID++ +S   +   ++KT+  V
Sbjct: 1002 TVLQDPNLAHLFTPDSLAEVAVTAEF----GSARLHGIIDRLVVSDTAVLAVDFKTNQTV 1057

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            P +    P   + Q+  Y   LK  YP++ +   +++     +  +P + + +A  
Sbjct: 1058 PSQPATCPEGILRQMGAYTHALKQVYPDRKIETAILWTRNCTLMHLPHDIVTQALQ 1113


>gi|163738014|ref|ZP_02145430.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
 gi|161388630|gb|EDQ12983.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
          Length = 1122

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 233/960 (24%), Positives = 400/960 (41%), Gaps = 66/960 (6%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+  F L      +++   ++       +D+       +E G  T  K A  L++ ++  
Sbjct: 211  LRALFDLPAEFDAKMLEHSVYLGGE---ADLLTRTCSMLEQGGSTDAKAAAKLRKITEPT 267

Query: 61   CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
              +    +L S FLT            K   T+++ + +  L ++L+         R + 
Sbjct: 268  LAD--LPVLESVFLTGASAKAPFTAKIKAFPTKKLRESNVALMDQLEPLMRRVEAARAQR 325

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  + +L     A      Y+  K+    LDF+DLI+    LL    V+AW+ Y++D
Sbjct: 326  LALAAVEKSLILHDFAAVFLPEYDRRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRLD 385

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233
              I+HIL+DE QDTS +QW+V+  L ++F  G+   S   RT+F VGD+KQSIYSF GA+
Sbjct: 386  GGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARSEVERTIFVVGDKKQSIYSFQGAD 445

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P    R +     R    G       L  SFRS+A IL +VD VF     A         
Sbjct: 446  PDAFDRMQAEFADRLAETGSALQNAALEFSFRSSAAILGLVDLVFKDSPGAGF-----HR 500

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               HR+ +    G V LW  V          ++  WT   D         ILA RIA  I
Sbjct: 501  DALHRAFKSELPGRVDLWPVVDKVDT----EEERDWTDPVDRPGARHHTVILAERIATAI 556

Query: 354  SNMIGT-------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              MI              + ++R +QA D L+LV++R +  L + + R  K    + + G
Sbjct: 557  KEMIDGKVTLPEDGPERGSFRRRPVQAGDFLILVQRRSE--LFSEIIRACKAAR-LPIAG 613

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             DR  +   LA+KDL AL  F+ + ED LS    LKSPLF + E  +F +  +R     +
Sbjct: 614  ADRLKIGAELAVKDLAALLSFLATPEDSLSLAAALKSPLFGWDEQTLFDLAHRRDGGSYL 673

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            +  ++  A    +++   +  I +L     F  P+D    IL    GRQ+ + R G E  
Sbjct: 674  WTALRDRA----AEYPDTMAIIDDLRSQTDFLRPYDLIERILTRHSGRQRLLGRLGPEAE 729

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D ++  L+  L  E+    SL   +  ++     IKR   A  N +R+M+VH +KGLE+P
Sbjct: 730  DGVNALLSQALAYERTDIPSLTGFLVWMQADDLEIKRQMGAAGNMIRVMSVHGSKGLEAP 789

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L DT  +               +      P+W   S    +++    +  ++  + E
Sbjct: 790  IVILPDTAKRKPPRD--------DEIMRAEAGPMWKLPSAQMPDVMQAARETAQEKARNE 841

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV +TRA   LI+      S +  S  +     + ++  N       +    +  
Sbjct: 842  RLRLLYVALTRAEKWLIVAAAGELSKDGDSWYQMVERALREAGANPYDTGYGEGL-RLQH 900

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +W    +    P  T   +            +P+               L+PS +    
Sbjct: 901  GDWDGLPFHADPPVVTSAPQ------------LPEVFRQLPPPYQPPVPTLSPSELGGAK 948

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                +    ++    RG  +H LL+ +    +        +    +      ++  +LL 
Sbjct: 949  ALPGDLGQDEDIAKARGSRLHSLLEHLPPADQDTWPQLANALLAGH------EDTADLLT 1002

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
              T +L NP +    + D+ +EV+++  +        I G ID++ ++ + +   ++K++
Sbjct: 1003 EATHVLTNPDLKAIFAPDTLAEVAITADL----DGRRIHGVIDRLIVTPERVQAIDFKSN 1058

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              VP  +E  P   + Q+  Y   L   YP++ +   L++     +  +P + ++ A   
Sbjct: 1059 ATVPTSVETCPEGLLRQMGAYAHALAALYPDRRIDTALLWTRTATLMDLPHDIVSSALKR 1118


>gi|163732946|ref|ZP_02140390.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149]
 gi|161393481|gb|EDQ17806.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149]
          Length = 1125

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 232/956 (24%), Positives = 389/956 (40%), Gaps = 65/956 (6%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
              F    + + + I   ++      +  +N  ++  +  G     K A  LQQ S     
Sbjct: 210  ALFDQPADLTTQQIEDQVFLGGEAAL--LNALIAPMLAKGG-NDAKAAAKLQQISALN-- 264

Query: 63   EERFSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                  L    LT              + T+       D               RD    
Sbjct: 265  FRSLPALEQVCLTGPTAKSPFSAKIGTLPTKPTQAIVSDAMPAFDDFMGRIEIARDARIA 324

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                + T A    A      YEE K     LDF+DLI     LL    V+AW+ ++ID  
Sbjct: 325  LLAAQKTHALHRFAASFLPLYEEQKTLRGWLDFDDLIDRARALLNDEKVAAWVLFRIDGG 384

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEPK 235
            I+HIL+DE QDTS  QW+VIR L  +F  G+     + RT+F VGD+KQSIYSF GA+P+
Sbjct: 385  IDHILVDEAQDTSPAQWDVIRKLAAEFTTGEGARTETQRTVFVVGDKKQSIYSFQGADPR 444

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
               R +   + +   A Q F    L  SFRS + IL VVD+ F    +A   +++     
Sbjct: 445  EFDRMQSEFESKIRAAEQLFQNKTLAFSFRSASAILDVVDRTFDGQGDAGFSTDE----- 499

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            +H + +    G V +W  +    + Q   +  +W    D       + ILA RIA  I  
Sbjct: 500  QHIAFKDTLPGRVDIWPVI----EPQPAEEDRAWHDPIDRKAAHHHSVILAERIATQIKA 555

Query: 356  MIGTDTIFSNGK------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            MI  DTI  +        +R +QA D L+LV++R  + L T + R  K +  + + G DR
Sbjct: 556  MIARDTIPDDQHSDGEITRRPVQAGDFLILVQRR--SVLFTEIIRACK-NAGLDIAGADR 612

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +   LA++DL AL  F+   ED LS    L+SPLF +SE ++F++   R +     ++
Sbjct: 613  LKVGGELAVRDLAALLSFLAVPEDSLSLASALRSPLFGWSEKELFQLAHYRDK-----DH 667

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            + +        +   +K + +L     F  P+D    IL   KGR+  ++R G E  D +
Sbjct: 668  LWQALRTQADAYPETLKVLRDLRANVDFLRPYDLIERILTRHKGRRNLLARLGVEAEDGI 727

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +  L+  L  E+N+  SL   +  +E     IKR   +  N++R+MTVH AKGLE+P+V 
Sbjct: 728  NALLSQALAYERNAVPSLTGFLVWMETDDLEIKRQIDSASNQIRVMTVHGAKGLEAPIVI 787

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L D+G +           +   +    G P+W   +      ++  +  +  +   E  R
Sbjct: 788  LPDSGKRNNP--------VRDDIVTLNGKPVWKTPANDTPAALTTKLDDIAAAQAAERLR 839

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV +TRA   LI+      S +  +            +   +        + ++    
Sbjct: 840  LLYVALTRAEKWLIVAAAGELSKQNDT-----------WYQRVDAAVDAAGAHLVDTHGL 888

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                      +  P+        +           +P +  + E   ++PS +       
Sbjct: 889  AVKRHQKGDWDALPVTAANPGAPMQTALDPCLTTRAPARAPLRE--TVSPSDLGGAKALP 946

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
             E+   +      G  +H  L+ +           I     K                  
Sbjct: 947  GEAGQDEEAAKAYGTSVHLFLEHLSAADTVDWPALIDILSNKGDPGL-----LRAASEAK 1001

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
             +L+NP +    + DS +EV+V+ +         + G ID++ +S   +   ++KT+  V
Sbjct: 1002 TVLQNPDLAHLFTADSLAEVAVTAEF----GTARLHGIIDRLIVSDTAVLAVDFKTNQTV 1057

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            P +    P   + Q+  Y   LK  YP++ +   +++     +  +P + + +A  
Sbjct: 1058 PSQPAACPEGILRQMGAYTHALKQVYPDRKIETAILWTRNCTLMHLPHDIVTQALQ 1113


>gi|221641019|ref|YP_002527281.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131]
 gi|221161800|gb|ACM02780.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131]
          Length = 1106

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 221/956 (23%), Positives = 382/956 (39%), Gaps = 65/956 (6%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  +G+   E    +   ++        +    +  ++E G+    K A  L+  S    
Sbjct: 209  RALYGVEGGE--AALLAQVFLGGE---EEWMPALIAALEAGSANDQKAAAKLRLLSFAAP 263

Query: 62   IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
                 + L    LT     +       +  T+        L ++L          R    
Sbjct: 264  TTATLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRC 323

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                 +        A      Y+  K     LDF+DLI     LL    V+ W+ +++D 
Sbjct: 324  CLLAAERARLIHAFAGVFLPLYQARKASRGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDG 383

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             I+HIL+DE QDTS  QW+VI  L ++F  G+      RT+F VGD+KQSIYSF GA+  
Sbjct: 384  GIDHILVDEAQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGADVA 443

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
               R +    +R   A ++   ++L  SFRS+  IL +VD  F  P       +     +
Sbjct: 444  AFDRMRAEFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRR-----QALGGEV 498

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            RH + R    G  +LW  V +       P+ E+W    D +  E  A+ LAR++A  I  
Sbjct: 499  RHIAFRGDMPGRAELWPLVEAA----EEPEPENWFDPVDLVSDEHHAARLARQVATRIRA 554

Query: 356  MIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            MI     I   G  R + A D L+LV++R D  +   + R  K + ++ + G DR  L  
Sbjct: 555  MIEAGVQIPQPGGFRPVAAGDFLILVQRRSD--IFGEIIRACK-EARLPIAGADRLKLGA 611

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             LA++DL AL  F+ + EDDLS   +L+SPLF +SE ++F +   R        Y+ +  
Sbjct: 612  ELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEGELFDLAHGRE------GYLWRRL 665

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                +     +  + +L   A F  P D     L    GR++ ++R G E  D +DE L+
Sbjct: 666  YDREAAHPGTVAILRDLRDQADFLRPFDLIERALTRHDGRRRLLARLGEEAEDGIDELLS 725

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L  E+    SL   ++ L+     +KR   A    +R+MTVH +KGLE+P+V L DT 
Sbjct: 726  QALAYERTDVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTA 785

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +    +             + G  +W   +      ++   +  +     E  RLLYV 
Sbjct: 786  DRKPRERDEL-------FTLEGGARVWKTPAAESPPQIAAAREARRARDAAENLRLLYVA 838

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            MTRA   LI          K      W+D++          ++      +++  W     
Sbjct: 839  MTRAQCWLIAAAAG-----KLETGGAWHDLIRQGMEAAGAERRDDGALVLDEGLWPPAAP 893

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                                  +                  +L+PS +        +++ 
Sbjct: 894  QASAAAAAARPVLPAWALAPAAEPPAAP------------EVLSPSALGGAKALPGDAMP 941

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
            ++      G  +H+LL+ +   P    +                 +   +L     +L  
Sbjct: 942  TEE-ALAHGSAVHRLLEHLPLHPPEGWEAAARGLL------PDLPDVAPVLAEARAVLSA 994

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
              +  A+   +  EV+V+ ++        +SG ID++ +    +   +YKT+  VP   E
Sbjct: 995  EHLAEALVPHALLEVAVTAEVA----GRRLSGTIDRLVVEPDRVLAVDYKTNRVVPDRPE 1050

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
             +P   + Q+  Y + L   YP +++   +++    ++  +P++ +  A    +T 
Sbjct: 1051 EVPEGILRQMGAYAEALAQIYPGRTIETAILWTQAARLMRLPRDIVRSALVRATTT 1106


>gi|167648808|ref|YP_001686471.1| double-strand break repair helicase AddA [Caulobacter sp. K31]
 gi|167351238|gb|ABZ73973.1| double-strand break repair helicase AddA [Caulobacter sp. K31]
          Length = 1157

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 248/959 (25%), Positives = 418/959 (43%), Gaps = 55/959 (5%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            S E +  +   +             + +  G  T +K A  +  A       +    L++
Sbjct: 230  SVEAVIAEA--MAELDRDLWRSIADVLLN-GTKTDIKCAGQM-MAVAADPHADLDQALAA 285

Query: 72   FFL-TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
             F      TP          K   DL+ +L   Q+   + R+     ++ + +  +L LA
Sbjct: 286  LFTEKGAGTPATWPAKTSGLKSREDLRARLLAEQERLEEAREWLRAARVAEDSSDALRLA 345

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                  +   K     LDF DLI  T  LL ++  +AW+ YK+D  I+HIL+DE QDT+ 
Sbjct: 346  GLYIQAHGVEKAARGALDFADLIDKTKVLLTQKVDAAWVLYKLDGGIDHILLDEAQDTAP 405

Query: 191  IQWEVIRSLTEDFFVGKNT----------HSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
             QW ++R+LT DFF G+                RTLF VGDEKQSIYSF GA P+R+L E
Sbjct: 406  EQWAILRALTSDFFAGEGAVRWRAEHSTQAQDARTLFVVGDEKQSIYSFQGAAPERLLAE 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS-TTTIRHRS 299
             +    + T+ G+    + L  S+RST ++L+ VD +FS PE   G+   +    +RH+ 
Sbjct: 466  TQAYIAQITDVGRVGKHVPLITSYRSTVEVLSFVDALFSAPETRSGVPAPAGEDLVRHQP 525

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             RI   G V LW             ++E+W +  D+  +  +   LA +IA  I  +I  
Sbjct: 526  FRIDHKGCVDLWPL----ERELPGEEREAWDAPLDAESEHGANRRLAEKIAVEIQALIRR 581

Query: 360  DTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +  + +    R     DILVLVR+RK   L   + R LK    + V G DR  L+ H+
Sbjct: 582  GDVVFDKETREWRPAHPGDILVLVRRRK--ALFEEVLRALK-RRGVPVAGADRLSLSAHI 638

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
               DL+ALGRF L  +DDL+   +LKSP    S+DD++ +   +    T++  +   A  
Sbjct: 639  VFDDLLALGRFCLFPDDDLTLAALLKSPFCGLSDDDLYGL--AKGRQGTLWAALDARAVE 696

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG-----RQQFISRFGNEVIDVLDE 531
               K+      +   +  ++   P +F+ L+LG         R + ++R G E  + LDE
Sbjct: 697  H-PKWTAAHALLRWALTESRRRQPFEFYALLLGRVDETTRSNRAKVLTRLGEEAAEALDE 755

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            FL   L  EQ     L+ L+++       +KR       EVR+MT H AKGLE+P+VFL 
Sbjct: 756  FLAQILAAEQRGVRDLEALVADFASLDIIVKREMEGARQEVRVMTAHGAKGLEAPIVFLP 815

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            +T  +  +          P +  D G  +W     +     +   +  +K   EE  RL 
Sbjct: 816  ETTMKGGARGS-------PLMRTDQGGFLWCASKANDCEPSAMARERREKKDAEEALRLY 868

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YV +TRA D+LI+C   +   + ++    +        H           +       I+
Sbjct: 869  YVALTRARDRLILCGRIDARTKDETVGGWYAAARAAFAH----------PDIEPGVREIS 918

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
             +       +                  P    +P + +        PST++ + + +  
Sbjct: 919  EDGRLRFGPDPMRAEAAAPSAAPAPIPTPAWTLAPARPETPAARYAAPSTLEDEARGSAP 978

Query: 772  SLLSDNQTF---NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
            S L+         RG IIH+LLQ++  +    R            +    ++   +  + 
Sbjct: 979  SPLAAVSGLGRYRRGEIIHRLLQLLPDIEPMGRGTAANRLLAAE-RDLTDEQRGEMAAAA 1037

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
              +LE+          S +EVSV+G        + ISGR+D++ ++   + + +YKT+  
Sbjct: 1038 FGVLEDDRFAEVFGPGSRAEVSVAGGAAKLPPGLAISGRVDRLVVTPDRVLVVDYKTNRP 1097

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
             P  IE     +++Q+++Y  +L + +P + +   +++   PK+  +P+  +  A A +
Sbjct: 1098 SPARIEDADPAYLSQMAVYAAVLAEVFPGRPIEAAIVWTDGPKLMAVPEKVMAAALARL 1156


>gi|163742590|ref|ZP_02149976.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter
            gallaeciensis 2.10]
 gi|161384175|gb|EDQ08558.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter
            gallaeciensis 2.10]
          Length = 1122

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/960 (24%), Positives = 400/960 (41%), Gaps = 66/960 (6%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+  F L      +++   ++       +D+       +E G  T  K A  L++ ++  
Sbjct: 211  LRALFDLPAEFDAKMLEHSVYLGGE---ADLLTRTCSMLEQGGSTDAKAAAKLRKITEPT 267

Query: 61   CIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
              +    +L S FLT                T+++ + +  L ++L+         R + 
Sbjct: 268  LAD--LPVLESVFLTGASAKAPFTAKINAFPTKKLRENNVALMDQLEPLMRRVEAARAQR 325

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  + +L     A      Y+  K+    LDF+DLI+    LL    V+AW+ Y++D
Sbjct: 326  LALAAVEKSLILHDFAAVFLPEYDRRKQLRGWLDFDDLILKARQLLNDPAVAAWVLYRLD 385

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAE 233
              I+HIL+DE QDTS +QW+V+  L ++F  G+   S   RT+F VGD+KQSIYSF GA+
Sbjct: 386  GGIDHILVDEAQDTSPVQWDVVEKLAQEFTAGEGARSEVERTIFVVGDKKQSIYSFQGAD 445

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P    R +     R    G       L  SFRS+A IL +VD VF     A         
Sbjct: 446  PDAFDRMQAEFADRLAETGSALQNAALEFSFRSSAAILGLVDLVFKDSPGAGF-----HR 500

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               HR+ +    G V LW  V          ++  WT   D         ILA RIA  I
Sbjct: 501  DALHRAFKSELPGRVDLWPVVDKVDT----EEERDWTDPVDRPGARHHTVILAERIATAI 556

Query: 354  SNMIGT-------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              MI +            + ++R +QA D L+LV++R +  L + + R  K    + + G
Sbjct: 557  KEMIDSKVTLPEDGPERGSFRRRPVQAGDFLILVQRRSE--LFSEIIRACKAAR-LPIAG 613

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             DR  +   LA+KDL AL  F+ + ED LS    LKSPLF + E  +F +  +R     +
Sbjct: 614  ADRLKIGAELAVKDLAALLSFLATPEDSLSLAAALKSPLFGWDEQTLFDLAHRREGGSYL 673

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            +  ++  A    +++   +  I +L     F  P+D    IL    GRQ+ + R G E  
Sbjct: 674  WTALRDRA----AEYPDTMAIIDDLRSQTDFLRPYDLIERILTRHSGRQRLLGRLGPEAE 729

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D ++  L+  L  E+    SL   +  ++     IKR   A  N +R+M+VH +KGLE+P
Sbjct: 730  DGVNALLSQALAYERADIPSLTGFLVWMQADDLEIKRQMGAAGNMIRVMSVHGSKGLEAP 789

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L DT  +               +      P+W   S    +++    +  ++  Q E
Sbjct: 790  IVILPDTAKRKPPRD--------DEIMRAEAGPMWKLPSAQMPDVMQAARETAQEKAQNE 841

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV +TRA   LI+      S +  S  +     + ++  N       +    +  
Sbjct: 842  RLRLLYVALTRAEKWLIVAAAGELSKDGDSWYQMVERALREAGANPYDTGYGEGL-RLQH 900

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +W    +    P  T   +            +P+               L+PS +    
Sbjct: 901  GDWDGLPFHADPPVVTSAPQ------------LPEVFRQLPPPYQPPVPTLSPSELGGAK 948

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                +    ++    RG  +H LL+ +    +        +    +      ++  +LL 
Sbjct: 949  ALPGDLGQDEDIAKARGSRLHSLLEHLPPADQDTWPQLANALLAGH------EDTADLLT 1002

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
              T +L NP +    + D+ +EV+++  +        I G ID++ ++ + +   ++K++
Sbjct: 1003 EATHVLTNPDLKAIFTPDTLAEVAITADL----DGRRIHGVIDRLIVTPERVQAIDFKSN 1058

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              VP  +E  P   + Q+  Y   L   YP++ +   L++     +  +P + ++ A   
Sbjct: 1059 ATVPTSVETCPEGLLRQMGAYAHALAALYPDRRIDTALLWTCTATLMDLPHDIVSSALKR 1118


>gi|77462066|ref|YP_351570.1| UvrD/Rep family helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77386484|gb|ABA77669.1| Helicase, UvrD/Rep family [Rhodobacter sphaeroides 2.4.1]
          Length = 1106

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 224/956 (23%), Positives = 389/956 (40%), Gaps = 65/956 (6%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  +G+  +E    +   ++        +    +  ++E G+    K A  L+  S    
Sbjct: 209  RALYGVEGDE--AALLAQVFLGGE---EEWMPALIAALEAGSANDQKAAAKLRLLSFASP 263

Query: 62   IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
                 + L    LT     +       +  T+        L ++L          R    
Sbjct: 264  TTATLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRC 323

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                 +        A      Y+  K     LDF+DLI     LL    V+ W+ +++D 
Sbjct: 324  CLLAAERARLIHAFAGVFLPLYQARKAARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDG 383

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             I+HIL+DE QDTS  QW+VI  L ++F  G+      RT+F VGD+KQSIYSF GA+  
Sbjct: 384  GIDHILVDEAQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGADVA 443

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
               R +    +R   A ++   ++L  SFRS+  IL +VD  F  P       +     +
Sbjct: 444  AFDRMRAEFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRR-----QALGGEV 498

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            RH + R    G  +LW  V +       P+ E+W    D +  E  A+ LAR++A  I  
Sbjct: 499  RHIAFRGDMPGRAELWPLVEAA----EEPEPENWFDPVDLVSDEHHAARLARQVATRIRA 554

Query: 356  MIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            MI     I   G  R + A D L+LV++R D  +   + R  K + ++ + G DR  L  
Sbjct: 555  MIEAGVQIPHPGGFRPVAAGDFLILVQRRSD--IFGEIIRACK-EARLPIAGADRLKLGA 611

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             LA++DL AL  F+ + EDDLS   +L+SPLF +SE ++F +   R        Y+ +  
Sbjct: 612  ELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEGELFDLAHGRE------GYLWRRL 665

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                +     +  + +L   A F  P D     L    GR++ ++R G E  D +DE L+
Sbjct: 666  YDREAAHPGTVAILRDLRDQADFLRPFDLIERALTRHDGRRRLLARLGEEAEDGIDELLS 725

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L  E+    SL   ++ L+     +KR   A    +R+MTVH +KGLE+P+V L DT 
Sbjct: 726  QALAYERTDVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTA 785

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +    +             + G  +W   +      ++   +  +     E  RLLYV 
Sbjct: 786  DRKPRERDEL-------FTLEGGARVWKTPAAESPPQIAAAREARRARDAAENLRLLYVA 838

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            MTRA   LI          K      W+D++          ++      +++  W     
Sbjct: 839  MTRAQCWLIAAAAG-----KLETGGAWHDLIRQGMEAAGAERRDDGALVLDEGLWPPAAP 893

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                          +         +P   ++P       P +L+PS +        +++ 
Sbjct: 894  QA------------SAAAAAARPVLPGWAWAPATEPPAAPEVLSPSALGGAKALPGDAMP 941

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
            ++      G  +H+LL+ +   P    +                 +   +L     +L  
Sbjct: 942  TEE-ALAHGSAVHRLLEHLPLHPPEGWEAAARGLL------PDLPDVAPVLAEARAVLSA 994

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
              +  A+   +  EV+V+ ++        +SG ID++ +    +   +YKT+  VP   E
Sbjct: 995  EHLAEALVPHALLEVAVTAEVA----GRRLSGTIDRLVVEPDRVLAVDYKTNRVVPDRPE 1050

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
             +P   + Q+  Y + L   YP +++   +++    ++  +P++ +  A    +T 
Sbjct: 1051 EVPEGILRQMGAYAEALAQIYPGRTIETAILWTQAARLMRLPRDIVRSALVRATTT 1106


>gi|302384281|ref|YP_003820104.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides
            ATCC 15264]
 gi|302194909|gb|ADL02481.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides
            ATCC 15264]
          Length = 1160

 Score =  529 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 247/972 (25%), Positives = 438/972 (45%), Gaps = 65/972 (6%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
                G   +     I  D   + +    +    ++ +M+ G+ T    A+ + +A  +  
Sbjct: 228  HALVGADPDRDVATIQNDF--MRFLDHGEWL-AMAEAMDRGSVTDQACAKRMWEADWS-- 282

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                F  ++S FLT    P+K++ T+      P+ ++ L   QD+ +         ++ +
Sbjct: 283  ----FPEIASVFLT-SGAPRKSMATKS---APPEARDWLTTMQDKVVATLGEVRKARVAE 334

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             T   LTLA+   A YE AK++   LDF DL+  T +LL  R  +AW+ +K+D  I H+L
Sbjct: 335  DTGHVLTLARAHGALYEAAKERRGALDFGDLVARTVELLTVRSSAAWVLFKLDGGIEHVL 394

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVG-----KNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            IDE QDT+  QW+++ +LTE FF G            RT+FAVGDEKQSIYSF GA P+R
Sbjct: 395  IDEAQDTAPEQWDIVEALTEGFFSGIGSKRYGAGKVERTVFAVGDEKQSIYSFQGARPER 454

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            + +E +        AG  F+ +EL  SFRST ++L+ VD VF  PE  + L  ++   I 
Sbjct: 455  LRQESQRYDVMVRGAGAAFAGVELATSFRSTPEVLSFVDAVFVSPERTRSLVGETVGAIP 514

Query: 297  -HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H + R+   G + LW         +  P++++W    D  P +S+   +A  +A  I  
Sbjct: 515  AHIAKRVDDHGCIDLWPLYA----DEKPPERDAWDDPLDQEPVQSARKRMAADLAREIRR 570

Query: 356  MIGTDTIFSNGKKRVIQ---AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
             +       + K R ++     D LVLVR+R        + R +K    + V G DR  L
Sbjct: 571  QVMAGVAVQDRKTRALRPCGYGDFLVLVRRRD--ATFEEIIRAMKA-VGVPVAGADRLKL 627

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED----DIFKICTQRHETETVYE 468
            + H+A  DL+A+ R  L  +D+LS   +L+SPL +  +D     ++++     + + ++ 
Sbjct: 628  SSHIAFDDLIAVARVALYPDDELSLAGVLRSPLCDIPDDGAADSLYELAGADPKRKRLWA 687

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGN 523
             +Q  A      +      I +    +    P  FF  +L         GR + ++R G 
Sbjct: 688  ALQARAGEH-PSWGRAHDLI-DFAIASSSRDPFAFFAGLLNRIDATGLSGRARILARLGR 745

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            E  + +DE LN  L  EQ     L+  +S LE     +KR       EVR+MTVH AKGL
Sbjct: 746  EAEEAIDETLNQVLAAEQRGGIDLETCLSMLETADVEVKREMEGARGEVRVMTVHGAKGL 805

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E+PVV L DT ++  +      +  +   +   G  +     K       +     +   
Sbjct: 806  EAPVVILPDTTAKAKAQG--PTLMPVELDDGAEGWLMCPGSEKEDCEASGEARTARQTRV 863

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             +E  RLLYV +TRA D+++I    +  ++   ++ +W+ ++ ++F              
Sbjct: 864  DDETLRLLYVALTRARDRVVILGRGSAKSKLGYDEGSWWAVLTETFERLG---------- 913

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
                +              P+     +   +    +P    +    D +    ++PS   
Sbjct: 914  ---GQVRDIGDGRRRFGVDPVVMAAGVASAIPGVTVPDWARAMPPVDPSA-RYVSPSQAK 969

Query: 764  TKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
               + +  S L+            F RG +IH LL+ +  +    R +       +  + 
Sbjct: 970  AVKRVSAPSPLAVAGADGGAPLGRFRRGDLIHLLLERLPEIEAAARPDAPRRMLARE-RD 1028

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
                +   ++ +   +LE+   +      S +EV+++G        + ISGRID++ ++ 
Sbjct: 1029 LSEAQRDEMIAAAFAVLEDARFSAVFGAGSRAEVALTGSAPGLPAGVSISGRIDRLVVTP 1088

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            + + + +YKT+   P  IE     ++AQ+++Y  +LK  YP++ +   L++   P++  +
Sbjct: 1089 ERVLVVDYKTNRPAPDRIEDADPAYVAQMAVYVAVLKRLYPDRPVEAALVWTDGPRLMAV 1148

Query: 936  PQNKLNKAFAEI 947
            PQ  +++A A +
Sbjct: 1149 PQGVMDEALAGL 1160


>gi|162146539|ref|YP_001600998.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785114|emb|CAP54658.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 1184

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 236/958 (24%), Positives = 410/958 (42%), Gaps = 39/958 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    G       + + +    +P      +   + +  E  +  +  KA  +       
Sbjct: 233  LMRVLGTR-GRDADAVRRAACAVP--DEERLRGMLRIVAEQASTAVRAKAVAMLDWMALA 289

Query: 61   CIEERFSLLSSFFLTQKF--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                           +    T      T+   K+S      L    +  I + +      
Sbjct: 290  PDARAAQWTRGARPCEAGRRTAPPGRPTRNSTKRSRRSATPLLAEAERIIAVDEECRAIA 349

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + + + A L +A  +   Y E K+   ++D++DLI  T DLLK    + W+ YK+D  I+
Sbjct: 350  ILRVSQALLDVAVPVLHRYGERKRGRGLVDYDDLIERTLDLLKDPGAA-WVLYKLDGGID 408

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP---RTLFAVGDEKQSIYSFHGAEPK 235
            H+L+DEVQDTS  QW +   LT +FF G   H      RTLFAVGD KQSIYSF GA+P 
Sbjct: 409  HLLLDEVQDTSPDQWAIAGGLTSEFFAGAGAHDDGAPPRTLFAVGDYKQSIYSFQGADPA 468

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                 ++  +++  +AG+ +    L +SFRSTA +L +VD VFS+P+ A+GL E      
Sbjct: 469  AFRHWRQRFRRQVEDAGRMWKEPALTVSFRSTAPVLRLVDSVFSLPDAARGLVEPGGGVP 528

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H S+R GQ G V+LW         +       W +  ++  Q ++A  LA  +A  I  
Sbjct: 529  GHLSARPGQGGRVELWPLTPI---DEAGEDANPWAAPRENAGQSTAAQRLADSLAAWIVA 585

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +             +   D+LVLV +R +   +  L R LK    + V    R  L D 
Sbjct: 586  ELRRPPEPGQA---PLTPGDVLVLVPRRSN--FVRALIRALKTQ-DVPVATLVRTGLVDQ 639

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            +A++DLMAL   +L  +DDL+  C+L SPL   S+D +  +   R +       + +  +
Sbjct: 640  VAVQDLMALCDALLLPQDDLTLACVLTSPLGGVSDDGVMDLAVGRGDRPLW--AVLRDRH 697

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                 ++     +  L     + SP+   +  LG   GR + ++R G E  + +DE L+ 
Sbjct: 698  AERPDWRAAWTMLDALFRRVDYASPYGLLSEALGPLGGRARLLARLGPEAAEPVDELLSA 757

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             LR E    +SLQ  +  L     T+KR   A  + VR+MT H AKGL++ +V L DT  
Sbjct: 758  ALRYESLHPASLQGFLHWLRASQETVKREPDAAADMVRVMTAHGAKGLQARLVILPDT-- 815

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             V + K    +           +P+W+P+++    +   L + ++ +  EEYNRLLYV +
Sbjct: 816  -VGTAKFDGGLVWARDQPSGLDLPLWVPRAEMGIGVTRALQQTIRAAAIEEYNRLLYVAL 874

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRASD+L++C           +        ++    +ER   +    +    E      S
Sbjct: 875  TRASDRLVVCGWQQKRMVTDESWYMLCRRGFEQAGAEERPFDLGWEGTRLVLEEAPARLS 934

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                          +       + P  + +P   +      L PS  D        ++ S
Sbjct: 935  GAPAAPRSRPEPPAVALPAWMGRAPDWIATPPSAEAKLLRPLVPSRPDDAPLGPQPAVRS 994

Query: 776  D------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                          Q   +G ++H LLQ +   P   R      + ++      A E   
Sbjct: 995  PLAIARARRPAAREQALRKGQLVHALLQYLPDRPAADRARVARDWLSRTGHGLDAAEQAR 1054

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
            +   +  ++++P M       S +E  ++G         +I G++D++ +   ++ + ++
Sbjct: 1055 IAAQVLAVMDDPAMAPLFGPGSRAEQPLAGIA----GGAVIVGQVDRMMVRPGDVLLCDF 1110

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
            KT+   P +   +P  ++ Q++ Y  +L   YP++ + C L++  + ++  +P + L 
Sbjct: 1111 KTNRQPPDDAASVPVLYLRQMASYHALLGALYPDRPVRCTLVWTEDVRIMPLPDSLLA 1168


>gi|330991806|ref|ZP_08315755.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp.
            SXCC-1]
 gi|329760827|gb|EGG77322.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp.
            SXCC-1]
          Length = 1194

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/969 (24%), Positives = 428/969 (44%), Gaps = 51/969 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L +  G+    S E +              +   +      G+PT+   A+T+       
Sbjct: 239  LMHLLGI-SGRSAEDVLCRACA-TIPDEDALRDGLRFVARNGSPTVRALAETMLAWLGQD 296

Query: 61   CIEER--FSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                   +       LTQK  P+ +  +  ++  +   L  +L       I I  +    
Sbjct: 297  TAARAADWPTWRGSLLTQKGEPRQRGGLNIKLAAECSGLVGQLGAEAARVIGIDRQLRAI 356

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
             +F+ T A L++A+ +   Y   K    ++D++DLI  T  LL     + W+ YK+D  I
Sbjct: 357  TVFELTCALLSVAQPVLERYATRKSAQGMVDYDDLIDRTLQLLDDPGAA-WVLYKLDGGI 415

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS---PRTLFAVGDEKQSIYSFHGAEP 234
            +H+L+DEVQDTS  QW +   LT +FF G+ TH     PRT+FAVGD KQSIYSF GA+P
Sbjct: 416  DHLLLDEVQDTSPDQWAIAGGLTAEFFAGEGTHDDEGCPRTIFAVGDYKQSIYSFQGADP 475

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
            +     ++  ++RA  A   +    L +SFRSTA +L +VD VF+ P  A+G+ E     
Sbjct: 476  EAFRAWRQRFRRRAGAAQALWREPALTVSFRSTAPVLKLVDSVFANPAAARGVVEPEGGI 535

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              H ++R GQ G V++W  V  +           W +   +  Q ++   LA  +A  I+
Sbjct: 536  PAHVTARPGQGGRVEIWPPVPVEASGMDV---SPWMAPRHNAGQSTAQQRLADTLAGWIA 592

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
              +             +   D+L+LV +R  +     L R LK  + + V    R +LTD
Sbjct: 593  AQLRKAPAPGEA---ALAPGDVLILVPRR--SAFARALIRALKT-HDVPVATLVRTVLTD 646

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             LA++DLMAL   +L  +DDL+  C+L SP+    +D +  +             + +  
Sbjct: 647  QLAVRDLMALCAALLLPQDDLTLACVLTSPIGGLDDDSLMPL--ATGRNGQPLWAVLRAR 704

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
            +     +      ++ L     + +P+      LG   GR + ++R G E ++ +DE L+
Sbjct: 705  HAERPDWAAAWHILNTLFRQVDYATPYQLLAEALGPLGGRARLLARLGPEAVEPVDELLS 764

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              LR E+    SLQ  +  L     T++    A+ N VR+MT H AKGL++ +V L DT 
Sbjct: 765  AALRFEEAHAISLQGFLHWLNASDETVRHEPDASANMVRVMTAHGAKGLQARLVILPDTI 824

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            +     +    +           IP+W+P+ +   ++ + L + ++ +  EEYNRLLYV 
Sbjct: 825  ATP---RSDTNILWAADDVTGLDIPVWVPRRELATDVTAGLQEQIRLNAAEEYNRLLYVA 881

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            +TRASD+L+IC        +      WYD+    F +     +        +   +    
Sbjct: 882  LTRASDRLVICGW---EPGRGVPDGCWYDLCRQGFESAGATAQPFDLGWEGETLVLEEAR 938

Query: 715  STHHPENTPLEREETIKQLMDEQKIP-----------------KKLFSPIKNDI----NE 753
             +  P       +    + +                        +  +P + D      +
Sbjct: 939  VSSLPAAPSPCADHAPDRPVPLPDWMGHAPLWRPVMPVAEGPLARPLAPSRPDDVALGPQ 998

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
            P + +P    +  +   +   S  +   RG ++H LLQ +   P  +R     ++  + A
Sbjct: 999  PAVRSPLAAASTVRARADREASRARALQRGQLVHALLQYLPDCPVSRRAELADAWLARPA 1058

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873
                  +   L+  +  +++ P +    +  S +E  ++G +       +I G++D++++
Sbjct: 1059 AGLAPAQRGELVAQVLAVMDQPALAALFAPGSRAEQPLAGVV----GQQVIVGQVDRMAV 1114

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
                + + ++KT+ H PQ I+  P  ++ Q++ Y  +L+  YP + +VC L++    +V 
Sbjct: 1115 DAGTVTVCDFKTNRHPPQSIDRTPVLYLRQMAAYRALLRGVYPGRQVVCALVWTEGVRVD 1174

Query: 934  IIPQNKLNK 942
            I+P   L++
Sbjct: 1175 ILPATLLDR 1183


>gi|296448609|ref|ZP_06890479.1| double-strand break repair helicase AddA [Methylosinus trichosporium
            OB3b]
 gi|296253881|gb|EFH01038.1| double-strand break repair helicase AddA [Methylosinus trichosporium
            OB3b]
          Length = 1145

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 245/961 (25%), Positives = 433/961 (45%), Gaps = 45/961 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+   GL+  E+   I  ++         D  + ++ ++  G     K    L  A+Q+ 
Sbjct: 220  LRRHLGLAEGETLAAIEAEILEG-GLPSRDWPE-LAQTLRRGGANDGKLGDALAAAAQSG 277

Query: 61   CIEERFSLLSSFFLTQKFTPQKN----IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
             I++  +     F TQK  P+ +    II+  + K+ P L  +L+  +D  + + +R   
Sbjct: 278  DIDDYLA----VFFTQKGEPRGSGKQKIISAGLQKQQPALLARLEDERDRLVALIERRKA 333

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
               F  ++A   +   + + YE  K    + DF+DLI  T  LL +     W+ YK+D +
Sbjct: 334  AAAFDRSMALAAIGDAILSDYERMKSNRGLFDFDDLIERTRRLLLRSSAG-WVLYKLDSQ 392

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            I+HIL+DE QDTS  QW+++ +L  +F  G +   + R+ FAVGDEKQSI+SF GA P++
Sbjct: 393  IDHILVDEAQDTSAAQWDILAALAAEFCAGASARRAARSFFAVGDEKQSIFSFQGAAPEK 452

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                +R+   R  +A   F  + L  SFRS+ D+L  VD +F+   N +GLS D      
Sbjct: 453  FDAMRRVFAGRFRDARMSFETVRLTRSFRSSPDVLAAVDDIFAHEGNRRGLSADPQEPAP 512

Query: 297  -HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H + +    G V++WE       +        W    D +   + A+ LAR+IA     
Sbjct: 513  QHEAWKADVRGRVEIWEP----ESADVAEAPPDWRLPLDYVNDATPAARLARKIARRTKA 568

Query: 356  MI---GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            ++     + +   G  R ++  D+++LVRKR        + R LK +  ++V G DR  L
Sbjct: 569  LLAPENGECVEDKGAIRAMRPGDVMILVRKRD--AFFEAVIRALKAE-GVAVAGADRLDL 625

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            + H+A+ DL+ALGR  L +EDDL+   +LKSPL    +DD+  +      + ++++    
Sbjct: 626  SGHIAVMDLVALGRAALLREDDLTLAVLLKSPLVGLDDDDLIAL--APGRSGSLHDA--- 680

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
             A     +       I     +A+  +P DF++L LGA  GR++ ++R G E  D +DEF
Sbjct: 681  LAASPQPRHAEAAALIAHWSRLARTLAPFDFYSLALGAGGGREKLVARLGVEANDAIDEF 740

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            L      E+    +L   ++ +E    +IKR      + VR+MTVH AKGLE+ VVFL D
Sbjct: 741  LRLASAFEREQAQTLTGFLASVEALELSIKRDMEQAGDAVRVMTVHAAKGLEAKVVFLPD 800

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T      H   K   +     +D    +W     +    V+   + L+++ ++E+ RLLY
Sbjct: 801  TCGAPAGHHDPKLFVL---GEEDEAALVWSTGKDADPPAVARARETLREAARDEHRRLLY 857

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V +TRA ++L I             +  WYD + D+        +        K+  +  
Sbjct: 858  VALTRAEERLYIAGFHGPRGR---AEDCWYDAIRDALE--PSCARAPDPFEATKEILVRG 912

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
            + +    + TP   E  +  L      P    S     +     L  +           +
Sbjct: 913  DAARGRVQATPAREERVV--LPAYALQPAPRESAPAPPLRPVTALAAADRIPVADEYAST 970

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
               D +    G + H LLQ +   P  +R+     +    A      + + +  +   ++
Sbjct: 971  TRQDGERLLIGRLTHALLQRLPDTPPERREAAARKFLELRAVSLDEAQRERVARAALAVI 1030

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH--HHVP 890
             +  +       S  EV +  ++   + +I ++GRID+++ +     + ++KT    + P
Sbjct: 1031 ADRSLVALFGPRSAPEVEIVARLMGSRGEIAVTGRIDRLAETDSEAIVADFKTGAARNPP 1090

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
               +      + QL++Y       YP K++ C+L++     +     ++L+ A  E+ T 
Sbjct: 1091 SRTQ------LRQLAVYRAAAAQLYPGKTIRCVLVFTETATIVEPTPSELDAALEEVLTN 1144

Query: 951  I 951
            +
Sbjct: 1145 L 1145


>gi|89067401|ref|ZP_01154914.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
            granulosus HTCC2516]
 gi|89046970|gb|EAR53024.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola
            granulosus HTCC2516]
          Length = 1119

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/959 (24%), Positives = 379/959 (39%), Gaps = 64/959 (6%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG +   +   I +         V  +   V      G     K A  L      +
Sbjct: 204  LAAGFGAATGLTAAGIVRSHL---GADVITLLGEVHRVCLGGGKNDTKAADKLAPLLGKR 260

Query: 61   C-IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
                  F +L   FLT                T+ +     +L  +L         IR  
Sbjct: 261  EMDIPAFHVLCDVFLTGGKAKAPYSAKLTGFPTKAVRGSCAELMGRLDPVMQTVEDIRPA 320

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  ++ T A    A      +E  K    +LDF+DLI+ T  LL+ R ++ W+ +++
Sbjct: 321  VIAQLAYERTRALYAFATPFCRAFETKKLSRGLLDFDDLILKTRALLEDRALAQWVLFRL 380

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT-HSSPRTLFAVGDEKQSIYSFHGA 232
            D  I+HIL+DE QDTS  QW VI  LT++   G+       RTLF VGD+KQSIYSF GA
Sbjct: 381  DGGIDHILVDEAQDTSPDQWRVIERLTDELAAGRGAGEDRERTLFVVGDKKQSIYSFQGA 440

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            + +    ++ +   R    G K     L  SFRS A IL +VD  F        L E   
Sbjct: 441  DAEMFEAKRELFTDRLATGGGKLHSQPLQFSFRSAAAILQLVDATFQ-----GDLREGLD 495

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              + HR+ +    G V LW        +  +     W    D + ++     LARR+A  
Sbjct: 496  PVVYHRTFKTELPGRVDLWPVEPEAEKTDTDA---PWYKPVDHVSEQHHDVKLARRVAEQ 552

Query: 353  ISNMIGTDTIFSNGK-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I  +I         K     +R I   DIL+LV++R  + L   + R  K    + + G 
Sbjct: 553  IQTLINRKATIPVEKGGRILRRPIHEGDILILVQRR--STLFAEIIRACK-KLGLRIAGA 609

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            DR  +   LA++DL AL RF+   EDDLS    L+SPLF ++E ++F +   R     ++
Sbjct: 610  DRLRVGAELAVRDLAALLRFLALPEDDLSLAAALRSPLFGWTEQELFTLAHHRR--GLLW 667

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
              ++             +K + +L     F  P+D  + IL    GRQ+ + R G E  D
Sbjct: 668  SALRD-----SDDHPETLKTLRDLRAQTDFLRPYDLLSRILIRHGGRQKLLDRLGAEAED 722

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
             +D  L   L  E+++  SL   +S +E     +KR        +R+MT+H AKGLE+PV
Sbjct: 723  GIDALLAQALAYERSTVPSLTGFLSWMETEDVEVKRQMDEQGERIRVMTIHGAKGLEAPV 782

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V L +TG +         +  +        +  W P +      + D    L ++ + E 
Sbjct: 783  VILPETGVRQTQSDTRSAIWPL------EDVVAWRPSTDRLPAALQDARAKLVEAEERER 836

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             RLLYV +TRA   LI+C       E      +WY MV         +   +      + 
Sbjct: 837  RRLLYVALTRAEKWLIVCGAGKIGKEVG---DSWYGMVEAGLERLGALPHPQPGGDGLRY 893

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E   +      P                        F+P+         L+PS +     
Sbjct: 894  ETGDWSAPDLAPPEPDAAEPVAPPN-----------FAPVALPPAALQTLSPSDLGGAKV 942

Query: 768  TNL-ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                 +         RG  +H LL+ +      +R N   S         PA E ++LL 
Sbjct: 943  LPGDPAGGDREAALERGNQVHLLLEHLPGTLPLERANVALSLF----PDLPAPERQSLLT 998

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKT 885
                +L  P +         +EV V+  +        + G ID +       + + ++KT
Sbjct: 999  DAEAVLSAPGLAELFEKG-LAEVPVTATL-AELNGARLHGTIDLLI--PGEPLRVIDFKT 1054

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            +  VP+  E +P   + Q+  Y   L   YP +++   +++ S  ++  +P + +  A 
Sbjct: 1055 NRLVPKTPEEVPEGLLRQMGAYAAALGQIYPGRAIETAILWTSTAELMPLPHSLVIAAL 1113


>gi|254420948|ref|ZP_05034672.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
 gi|196187125|gb|EDX82101.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
          Length = 1139

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/948 (26%), Positives = 428/948 (45%), Gaps = 41/948 (4%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G   +   E + +D   + +   ++ N+ ++ +METG+    K A  +  A         
Sbjct: 223  GAEPDRGPEELEQDF--VAWIDPAEWNR-MAEAMETGSTNDRKIADAMSVA---APPYAG 276

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            F+ L+  F TQ   P+K++ T+   + +      L   Q +F+  R+     ++   T+ 
Sbjct: 277  FAALAGVFCTQAGEPRKSMGTKSAPQGA---VGWLLDLQTKFLAARESLRKARIADDTIK 333

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             LTLA+   A YE AK +   LDF DL+     LL +   +AW+ YK+D  ++H+LIDE 
Sbjct: 334  VLTLARAHAAFYEAAKAQRGALDFPDLVARAAALLTRSGAAAWVLYKLDGGVDHVLIDEA 393

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT+  QW ++R+LT +F+ G    +S RT+FAVGDEKQSIYSF GA P+R+ +E+    
Sbjct: 394  QDTAPEQWAIVRALTGEFYSG---QTSGRTVFAVGDEKQSIYSFQGARPERLRQERADFL 450

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
              A  AG+ F+  EL  S+RST ++L  VD VF+ P+  + L+       RH  +RIGQ 
Sbjct: 451  ALAEGAGEPFAGPELNTSYRSTEEVLAFVDAVFADPDRTRALTGPQGDIARHIPARIGQH 510

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
            G + LW   +     +  P+ E+W    D     S+   LAR +A  I   + +     +
Sbjct: 511  GAIDLWPLFL----DEPAPETEAWDDPVDQESVGSARKRLARDLAREIRRQVESGLAVFD 566

Query: 366  GKKRVIQ---AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
             + R ++     D +VLVR+R        + R LK +  + V G DR  L+ H+   DL+
Sbjct: 567  SRTRELRPAGYGDYIVLVRRRD--ATFEEIIRALKTE-GVPVAGADRLKLSSHIVFDDLI 623

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            AL RF L  +DDLS   +L+SPL +  ED ++ +  + +          +       ++ 
Sbjct: 624  ALARFALFPDDDLSLAEVLRSPLCDVDEDGLYALAGRENRKAGQLWRDLRDRAHERPEWT 683

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVIDVLDEFLNFTL 537
                 +   I  A+   P  FF+  L         GR + ++R G E  + +DE LN  L
Sbjct: 684  RARDALQAAIA-ARGGDPFAFFSQALNRVDDTGRSGRARILARLGREAEEAVDETLNQIL 742

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              E      L+  +++LE     +KR       EVR+MTVH AKGLE+P+V L DT  + 
Sbjct: 743  AAENRGAIDLETCLAQLEAADVEVKRELEGARGEVRVMTVHGAKGLEAPIVILPDTTMKA 802

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             +        +     +     +    +K      +D     +  T +E  RLLYV +TR
Sbjct: 803  KAQGPSLMPAVTLE-GEGEAWLMAPGSAKDDCPASADARAARQARTDDETLRLLYVALTR 861

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A D++I+   +++   +     +W+ ++ ++F       +                  T 
Sbjct: 862  ARDRVIVMGRASSRGAEP---GSWWSVIEETFDRLGEQVREVENGVRRFGVDPERRPVTT 918

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
             P+ T                  +                +P      G        +  
Sbjct: 919  APDRTTAALPIWATTPPPADAAARFAAPSRMEGSIRIPAPSPLARSAAG-------GASL 971

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
              F RG +IH+LL+ +  +    R +       +        +   ++ +   +L++   
Sbjct: 972  GRFRRGDLIHRLLERLPEIAPADRPDAARRLLARETD-LDDAQRGEMIAAAFSVLDDARF 1030

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                   S +EV+++G +  P   + I+GRID++ ++   + + +YKT+   P  ++ + 
Sbjct: 1031 APVFGPGSRAEVALTGALPGPS-SVAINGRIDRLVVTPDRVLVIDYKTNRPAPDALDRVD 1089

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
              ++ Q ++Y  +LK  YP++ +   L++   PK+  IPQ  L+ A A
Sbjct: 1090 PAYVLQAAVYVAVLKRLYPDRPVEAALVWTDGPKLMPIPQAMLDAALA 1137


>gi|296283899|ref|ZP_06861897.1| ATP-dependent exoDNAse beta subunit [Citromicrobium bathyomarinum
            JL354]
          Length = 1158

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 207/960 (21%), Positives = 395/960 (41%), Gaps = 54/960 (5%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
             GL  + S   + ++      F    +   ++   +    +    A+ +         + 
Sbjct: 213  LGLPSDFSEADLVRE-CADDRFDCGSLRACLATLQDWNTKSGRDAAEPISAWLAADPDQR 271

Query: 65   R--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
                +  +   L    +  KN+    + K+ P  +  +   Q     IRD+F    + + 
Sbjct: 272  LATLACFNGSLLVADGSKPKNLTN--LVKRDPTYEGNVAAVQASLDAIRDKFALLALAEY 329

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
               +L L +     ++EAK+ + ++DF+D I     LL   +++ WI YK+D+  +HIL+
Sbjct: 330  LTPALELGRRFALRWDEAKRVHGLVDFDDQIARAATLLGNSEMAQWIGYKLDRSFDHILV 389

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            DE QDT+  QW +I +LT+DFF G     +  RT+F VGD KQ+I+ F G EP+  + ++
Sbjct: 390  DEAQDTNDSQWAIIDALTQDFFDGLGAAGARLRTIFVVGDYKQAIFGFQGTEPRLFVDKR 449

Query: 242  RINQKRATN------------------AGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
                 R  +                       + + L  +FRS+  IL  VD+  +    
Sbjct: 450  EQYDARINSAIANAEALAHETREAPLVPLAPLARLGLERNFRSSQVILDFVDRAVAHV-- 507

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
              G           + +   + G V LW  + ++        +E     +   P+     
Sbjct: 508  --GTQAMGMPGEEVQHTGEDRPGRVTLWAPIRAEESDDPEAVEEDGAETWLPAPER---- 561

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             +A RIA  +   +      + G  R     DI++LVRKR     +  L     +   + 
Sbjct: 562  RMADRIAAQVKQWLEDGHPLTKGGTRRAGPGDIMILVRKR---RALAGLIVARLHAAGVP 618

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
            V G DR  L   LA+KDL+A  RF     DDL    +L SPL  +S+DD+ +    R ++
Sbjct: 619  VAGVDRLRLGAPLAVKDLLAALRFAAQPRDDLMLANLLVSPLGGWSQDDLLE-HGLRDKS 677

Query: 464  ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFG 522
              ++++I++               +  L+    +  P      +L G   GR++ ++R G
Sbjct: 678  VGLWDHIRR---SDAPLCMATADRLRALLARVDYEHPQALLHWLLTGPWDGRRKLVARLG 734

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
             E  D +DE +            SLQ  ++  +     +KR  + + + VR++T H +KG
Sbjct: 735  REANDPIDELVGAAFAYCAEHTPSLQGFLNWFDASDEELKREAAGSGDAVRVLTAHGSKG 794

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            L++P+V L D                  + +D   +P+     +++   V    +  K  
Sbjct: 795  LQAPIVILADATGNP---DRGPARAGELATDDGRTVPLPSLPKEAKAGPVVAAEEAKKAR 851

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             +EE+ RL+YV MTRA + L I      S +K   + +WY      F ++   +   +++
Sbjct: 852  EREEHWRLMYVAMTRAEEALYIGGALLPS-DKDVPEASWYAQAAALFDSEGGGEGEGVSD 910

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
             I  +       +   P                   +P+        + + P  L PS  
Sbjct: 911  PIWGERHDLGTLADIAP------PAPDAASRAQRPALPEWATRAPAAEPSPPRPLAPSAA 964

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                  N   L +  +   RG +IH+LL+ +  +    R+   +++    A         
Sbjct: 965  GDDLAPNPPGLATGAEAAQRGTLIHRLLERMPDIAPEDREARGSAWLAAQAGDLSEGARA 1024

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
             +L     +L++P      +  + +EVS++  +    +  +++G++D++ ++++ + + +
Sbjct: 1025 AMLEQALGVLDHPDFAALFAPGALAEVSLAATV----EGQVVTGKLDRLCVAEEEVLVVD 1080

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            YKT    P  +E +P   + Q+S Y   L   YP + +   L+Y   P++ ++P   L  
Sbjct: 1081 YKTTRRAPTSLEQVPTATLRQMSAYAHALAAIYPGRRICAALLYTQTPQLIVLPHAVLAA 1140


>gi|323138129|ref|ZP_08073202.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC
            49242]
 gi|322396591|gb|EFX99119.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC
            49242]
          Length = 1145

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 252/953 (26%), Positives = 412/953 (43%), Gaps = 50/953 (5%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            E+   I K++         D    ++ ++  G+    K A +L++A       +   +  
Sbjct: 230  ETLARIEKEIVEGGE-PWPDWP-ALAKALRGGSSNDGKLADSLERAYALAPHPDCIDIYL 287

Query: 71   SFFLTQKFTPQ----KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            S F TQK  P+      IIT  + K  P L E++++ +D    + ++       + ++A 
Sbjct: 288  SAFYTQKGEPRGAGKTKIITAGLVKGEPGLLERMEEERDRLAPLIEKRKAAATAERSMAL 347

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            +TL   +   Y  AK+   +LD++DLI     LL++    +W+ YK+D +I+HIL+DE Q
Sbjct: 348  MTLGDAIVTEYSRAKRYRNLLDYDDLIEGARRLLQRSS-PSWVLYKLDSQIDHILLDEAQ 406

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DTS  QW+++ ++ ++F  G       RT FAVGDEKQSI+SF GA P++    +R  ++
Sbjct: 407  DTSAAQWDILTAIADEFCAGDGARHMARTFFAVGDEKQSIFSFQGAAPEKFDAMRRDFER 466

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR-HRSSRIGQV 305
            R     + F  + L  SFRS   IL  VD VF    N  GL+ D    +  H + +    
Sbjct: 467  RFRTVERLFRDVRLLQSFRSAKGILEAVDMVFGHAGNGAGLASDPLAGMPKHEAWKTDVQ 526

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG---TDTI 362
              V++WE + S    Q   +   W    D + +   A  LA R+A  I  ++     + +
Sbjct: 527  ALVEIWEPIGS----QNAEEPADWRLPLDYVEENDPAERLAGRVARKIKTLLAPDSGECV 582

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               G+ R ++A DIL+LVRKR   P    L R LK ++ + V G DR  L DH+A+ DL+
Sbjct: 583  EDKGRLRPVEAGDILILVRKR--GPFFEALIRALKAEH-VPVAGADRLDLADHIAVNDLV 639

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            ALGR  L  EDDL+   +LKSPL  F +DD+  +  +R  +           N G  + +
Sbjct: 640  ALGRAALLVEDDLTLATVLKSPLIGFDDDDLISLAPRRTGSL-----FSALKNSGDERHR 694

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            H  + I      A   +P DF+  ILG   GR + ++R G E  D +DEFL   L  E+ 
Sbjct: 695  HAAQTIDAWRRDAATLAPFDFYGRILGPGGGRTKLVARLGAEANDAIDEFLRLALTFERE 754

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               SL   ++ +E    +IKR   A    VR+MT H AKGLE+ +VFL DT         
Sbjct: 755  QAPSLTSFLAMVETLDLSIKRDMEAAGAAVRVMTAHAAKGLEAKIVFLPDTCGAPAGKHD 814

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
             K   +     DD    +W     S    +       + + + E+ RLLYV +TRA ++L
Sbjct: 815  PKLFRL---GEDDDVSLVWSLDKASDPAALGAARARHRDAERAEHQRLLYVALTRAEERL 871

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
             I  +      +      WY+ + D+                               E  
Sbjct: 872  YIAGYH---GSRGPADGCWYNAIRDALEPACNAFADPFEPEG---------AILRLGEVP 919

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
            P              +IP    +  + +I+    L PS+             +     + 
Sbjct: 920  PRHDLARTVARESLVEIPAFAHTAARREIDPAPPLRPSSALAGADAFASGAAAAPNRRDA 979

Query: 783  -----GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
                 G + H LLQ + T  E +R+     +     +         +  +   ++E+P +
Sbjct: 980  ERVLEGRLTHALLQHLPTCAEPRRRAAAERFLALRGEGLDDARRNAIAQAALAVIEDPGL 1039

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                   S +EV +   +      + +SGRID+++ ++  + I ++KT            
Sbjct: 1040 ADLFGPQSAAEVDIVAAL---DNGLFVSGRIDRLAETENEVLIADFKTGRAREAPEPDQ- 1095

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
               + QL++Y   +   YP K L C L++             L+ AF     +
Sbjct: 1096 ---LRQLALYRAAIAPLYPGKRLRCFLVWTQTATAMEAQDAALDAAFERARER 1145


>gi|114769726|ref|ZP_01447336.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha
            proteobacterium HTCC2255]
 gi|114549431|gb|EAU52313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha
            proteobacterium HTCC2255]
          Length = 1125

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 244/963 (25%), Positives = 432/963 (44%), Gaps = 58/963 (6%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVS-----DINKYVSLSMETGNPTILKKAQTLQQA 56
            +  F ++       I +D+     F        DI   +   ++TG+   +K A  L++ 
Sbjct: 196  RTGFDIAPTPKDFGISQDISLDKIFNERINPHNDIINSLIELLKTGSKNDMKAADKLREY 255

Query: 57   SQTQCIEERFSLLSSFFLTQKFTP------QKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
                    +  +L   FL  K         ++N+ T ++  K+    +   K   +    
Sbjct: 256  FLDNTNNTKLKILEKVFLNGKTAKAGPYSAKENVATLKLIPKTHSFFDIQSKISKDVEAT 315

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            R        +  TL   + A+     Y++ K  N  LD++DLI  ++ LL    ++ W+ 
Sbjct: 316  RKCRLAINAYNKTLVLHSFAQSFLKAYDKRKAFNAYLDYDDLINLSSKLLTSSSMAQWVL 375

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            Y++D  ++HIL+DE QDTS  QW VI  L  +F  G + +  PR+LF VGDEKQSIYSF 
Sbjct: 376  YRLDGGLDHILVDEAQDTSPAQWAVIDCLAREFTYGISANDRPRSLFIVGDEKQSIYSFQ 435

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+P     +K   +    +  Q     EL  SFRS   IL++VD++F+           
Sbjct: 436  GADPDIFSEKKSEFRDLFQHINQDMESRELLYSFRSAPKILSLVDQIFTD-------ENI 488

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                 +H++    + G V LW  +    + Q  P +E W    D          LAR IA
Sbjct: 489  KNPKSKHKAFHDSKPGRVDLWPFI----EKQNQPDKEVWYRPVDMPAPNDPKQELARLIA 544

Query: 351  YTISNMIGT-DTIFSNGKKRVIQAKDILVLVRKR---KDTPLITFLTRFLKNDYKISVVG 406
             +I  ++ +  TI  + + R +   DIL+LV+ R     + L   + + LK+   + V G
Sbjct: 545  KSIKGILQSKQTINVDNELRPVNPGDILILVQGRETQSSSSLFKEILKELKS-SNLPVAG 603

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             DR  + D LA++D+++L +F     DDLS    ++SPL   +E+++FK  T      T+
Sbjct: 604  ADRLNVGDELAVRDILSLLQFANMANDDLSLAEAMRSPLLGLTENELFK--TAHKRQGTL 661

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            ++ ++   +       + +  + ++ +   +  P++    IL   +GR++ ++R G+EV 
Sbjct: 662  WQSLRDQNHHT-----NALAILTDIRNQVGYLRPYELIERILTKHRGREKLLARLGSEVE 716

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D +DE L  +L+ E     +L   +         IKR      N++R+MTVH +KGLESP
Sbjct: 717  DGIDELLAQSLQYEALEPPTLSGFLQWFVSGEVEIKRDM-GKGNQIRVMTVHGSKGLESP 775

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L DTG +         +             +W       + I ++  K +K+   +E
Sbjct: 776  IVILPDTGDKSLPQNAQITLS--------NNSSVWRSTGDEGSEIQNNAEKVIKEKQTQE 827

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV +TRA   LIIC      NE+     +WY+++  +  +    K         K
Sbjct: 828  KMRLLYVALTRAESWLIICGAGTRKNER-----SWYNLIKGALVSLNASKNDF------K 876

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
            D      +  ++ E+  + +E++ +    +   PK L    K        L PS +  + 
Sbjct: 877  DIGEGLLFKDNNWESLSV-KEKSGELNTKKNTYPKWLMKNAKKIDRPKQTLAPSNLVGEK 935

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                    S++     G I+HK+L+ +  +P+++ + F+  +   N      +   +L+L
Sbjct: 936  TLQNTFNSSNSDAKELGKILHKILEFLPNIPKNQWEVFLNGFFESNNFGVSDEIKDSLIL 995

Query: 827  SITRLLENPMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                LLENP +T    + +  SEV ++  I     +I+  G ID++ I +  I   ++K+
Sbjct: 996  EAISLLENPTLTYIFFTPNGLSEVGITSHIPQLNNNIL--GYIDRLIIDKDTITAIDFKS 1053

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            +  +P   E IP   +AQ ++Y   L+  YP   ++  +++    +V  I  N    +  
Sbjct: 1054 NVSIPISDEEIPKGILAQQAVYLLALQKIYPAYEIIIAILWTKTGEVMKISHNTAINSLD 1113

Query: 946  EIS 948
             I 
Sbjct: 1114 AIQ 1116


>gi|296117285|ref|ZP_06835876.1| double-strand break repair helicase AddA [Gluconacetobacter hansenii
            ATCC 23769]
 gi|295976178|gb|EFG82965.1| double-strand break repair helicase AddA [Gluconacetobacter hansenii
            ATCC 23769]
          Length = 1208

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 232/964 (24%), Positives = 422/964 (43%), Gaps = 48/964 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+   G+  +++  ++      +P      +   +    + G+P +   A  +       
Sbjct: 258  LRRVLGVQGDDAAAIMRDACTDIPAED--ALRDGLRRVAQDGSPKVRVTAAGMLAWLGQD 315

Query: 61   C--IEERFSLLSSFFLTQKFTPQKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                   +       + Q   P+K   +   ++KK P++ + L       + +  +    
Sbjct: 316  TNGRVACWDDWRQALVKQDGEPRKRGGVNATLDKKYPEIGDALMAEAQRVLDVEAQLRAI 375

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
             +   + A L++A  +   Y   K    ++D++DLI  T +LL+    + W+ YK+D  I
Sbjct: 376  MVRDLSRALLSVAVPVLEGYATRKTGQGLVDYDDLIERTLELLRDPGAA-WVLYKLDGGI 434

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS---PRTLFAVGDEKQSIYSFHGAEP 234
            +H+L+DEVQDTS  QW +   LT +FF G+ T      PRT+FAVGD KQSIYSF GA+P
Sbjct: 435  DHLLLDEVQDTSPEQWAIAGGLTAEFFAGEGTREHDGLPRTVFAVGDYKQSIYSFQGADP 494

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
            +   R +   +++A NA  ++    L +SFRST  +L +VD+VFSIP  A+G++E  +  
Sbjct: 495  EAFRRWREHFRRKARNAQARWREPALTVSFRSTTPVLALVDRVFSIPAAARGVAEPDSGI 554

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              H ++R G  G V+LW       D+      + W +   +  Q ++   LA  +A  I+
Sbjct: 555  PAHVTARPGGGGRVELWPITPGGDDATQA---DPWDAPTRNAGQSTAQQQLADTLAAWIA 611

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
              +             +   D+L+LV +R  +     L R LK    + V    R +LTD
Sbjct: 612  GELRRAPAPGQA---PLAPGDVLILVPRR--SAFARALIRALKTQ-DVPVATLVRTVLTD 665

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             LA++DLMAL   +L  +DDL+  C+L SPL    +D +  + T R         + +  
Sbjct: 666  QLAVRDLMALCAALLLPQDDLTLACVLTSPLGGLDDDSLMHLSTARQGRPLW--AVLRAR 723

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
            +    ++    + +  L     + SP+   +  LG   GR + ++R G E ++ +DE L+
Sbjct: 724  HGERPEWAAAWRMLDTLFGKVDYASPYALLSEALGPLGGRARLLARLGPEAVEPVDELLS 783

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              LR E+    SLQ  +  L     T+K    A  + VR+MT H AKGL++ +V L DT 
Sbjct: 784  AALRFEEAHAVSLQGFLHWLHASEETVKHEPDAAADMVRVMTAHGAKGLQARLVILPDT- 842

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              V + +    +  +        +P+W+P+ +    +   L   LK +  EEYNRLLYV 
Sbjct: 843  --VGTPRFDSGLLWVHDAQSGLDLPLWVPRRELGTGVTQALQDRLKLAAAEEYNRLLYVA 900

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            +TRAS++L++C        +   + +WYD+   +F   +   +            I   +
Sbjct: 901  LTRASERLVVCGW---EPRRGVPENSWYDLCRQAFVAQDARAEPFALGWPGDVLVIEEAY 957

Query: 715  STHHPENT-PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
            +        P                P  +  P   +      L PS  D        ++
Sbjct: 958  APRSVAPPSPPVSRPDAPPPHWMGTAPDWIPVPPVVEGPLARPLAPSRPDDVALGPQPAV 1017

Query: 774  LSDNQ-----------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
             S  +                    RG ++H LLQ +      +R      + ++     
Sbjct: 1018 RSPLEIARAGMGGQSAGTRRMNALRRGQMVHALLQYLPDCVPAERAQVARRWLSRRGSGL 1077

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
               +   +   +  ++E P M    + +S +E  ++G +        +    D+++++  
Sbjct: 1078 STADCARIADQVMAVMETPAMVPLFASNSRAEQPLAGVVGDTVVVGQV----DRMAVTDD 1133

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
             + + ++KT+   P  +E  P  ++ Q++ Y  +L   YP + + C+L++    +V ++P
Sbjct: 1134 EVLLCDFKTNRQPPARVEETPVLYLRQMASYRALLCMLYPGRRVTCILVWTEGVRVSVLP 1193

Query: 937  QNKL 940
               +
Sbjct: 1194 DALV 1197


>gi|188584140|ref|YP_001927585.1| double-strand break repair helicase AddA [Methylobacterium populi
            BJ001]
 gi|179347638|gb|ACB83050.1| double-strand break repair helicase AddA [Methylobacterium populi
            BJ001]
          Length = 1147

 Score =  521 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 261/952 (27%), Positives = 441/952 (46%), Gaps = 43/952 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L     L+   S   I + +       + D    V+  + TG  T  + A  L +A    
Sbjct: 225  LPRALALADGASVATIERAILEGS--TLGDWR-AVAGRLRTGKATDERLADGLVEADAAL 281

Query: 61   CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               +  +   S F T K  P+  K+  T+ + +   ++K+ L   Q   I + D     +
Sbjct: 282  EAGKALAPYRSVFFTDKDEPRAAKSFGTKAVPE---EVKQALLDEQARLIPLFDSLRAAR 338

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                T     LA  ++   E  K +   LDF+DLI  T DLL +   ++W+ YK+D+ ++
Sbjct: 339  ALARTQGLFRLAAEIHRRVEAQKTRLGALDFDDLIHKTLDLLSR-VGASWVLYKLDRGVD 397

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H+L+DE QDT+  QWE++R+LT +F  G+      RT FAVGD KQSIYSF GA+P+   
Sbjct: 398  HVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTRFAVGDPKQSIYSFQGADPREFE 457

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-IRH 297
              +R  ++ A  A   F+ + L LSFR+ + +L  VD VF +PE+  GLS ++ T    H
Sbjct: 458  LTRRAWERAAKGAELDFADVSLRLSFRTASHVLAAVDAVFRVPEHFAGLSFEAGTPGTVH 517

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S+R G  G V+LW         + +    +W +  D+    + A + ARRIA  +    
Sbjct: 518  ASARAGVPGAVELWGIEEPAEAEEPD----AWAAPVDAPEPNAPAIVTARRIARAVKAWT 573

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                   +   RV +  D+L+LVRKR  +     + R LK    + V G DR  +  H+A
Sbjct: 574  TRG----DACGRVWRPGDVLILVRKR--SAAFEEVIRALK-GLGVPVAGQDRLEVAGHIA 626

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            + DL+A+GR  L   DDL+    LK+PL   ++DD+ +IC +R  +ET+ + + + A  G
Sbjct: 627  VLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFSETLEDALTRHAEAG 686

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             +     +  +   I +A    P  F+  +LG   GR + ++R G E  D +D FL    
Sbjct: 687  DAAAIRGLAALRLWIRLAAENGPFGFYAALLGPHGGRSRLVARLGGEAGDAIDVFLAQAA 746

Query: 538  RNEQNSY-SSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              E       L+  +++        +   ++KR   A  +EVR+MTVH AKGLE+PVV +
Sbjct: 747  EAETGGDAPCLEAFLADYVVRPGRGRSGLSVKRDLEAGRDEVRVMTVHGAKGLEAPVVVV 806

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            +D    +   ++   +  +    D P  P+W                 L+   +EE+NRL
Sbjct: 807  IDGCEPL--GRNDPPLLGLDPAADGPLPPVWTGGRTQDCAATLAARSALQARAREEHNRL 864

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV MTRA+D L+I  +   + E  +   +W +MV           +   T       W 
Sbjct: 865  LYVAMTRAADHLVIAPYRGATRETPA---SWCEMVRIGLERGLGPGEAIETEHGPITIWR 921

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTKGKT 768
                ++           E        + +P  LFS    +      L+PS       G+ 
Sbjct: 922  DGSAASLAAAAEATALPE-------PEAVPDWLFSNAAPEAEAAPPLSPSGALGAADGQR 974

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
              +  L D +   RG ++H LL+ +  +   +R      +    A      +  +L+ S+
Sbjct: 975  QPQRRLGDAEARRRGALVHALLEHLPRIEPARRAEAAERFTRARAPALDEGKRTDLVRSV 1034

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             RL+E P +    S  + +EV++SG+I     +  ++GRID++ +    + + ++KT   
Sbjct: 1035 LRLIETPDLAPLFSAQARAEVALSGRIVVDGVERDVTGRIDRLVVEDGRVILCDFKTGR- 1093

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
             P +   +P    AQ+++Y ++    +P+ ++  LL++ S P V  +  ++L
Sbjct: 1094 PPADDAPLPEREAAQVALYARLAAAIWPDHAITALLVWTSGPVVRRVEGSRL 1145


>gi|89056557|ref|YP_512008.1| UvrD/REP helicase [Jannaschia sp. CCS1]
 gi|88866106|gb|ABD56983.1| UvrD/REP helicase [Jannaschia sp. CCS1]
          Length = 1120

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 247/953 (25%), Positives = 401/953 (42%), Gaps = 51/953 (5%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G+S   + + ++           +D+ + +   ++    T +K  Q L            
Sbjct: 211  GISPTLAEDDVFATALTGDE---ADLFQILRTHLDPTVKTQVKLGQDLAGLDLDTPTPAT 267

Query: 66   FSLLSSFFL-----TQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
               L   FL        FTP+   I + ++     +    +    +   + R      + 
Sbjct: 268  LKELERIFLFGPTAKTPFTPKIDGIASAKVRTTIGNDMAAINDLAERVAEARTLRTGLET 327

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             + T A    A      Y  AK+    LDF+DLI  T  LL    V+ W+ +++D  I+H
Sbjct: 328  ARKTHALHQFAARFLPAYARAKEARGWLDFDDLIDKTRALLSDTKVAQWVLFRLDGGIDH 387

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVL 238
            IL+DE QDT+  QW++++ L EDF  G+   +   RT+F VGD+KQSIYSF GA+P    
Sbjct: 388  ILVDEAQDTAPRQWDIVQRLAEDFAAGEGARTDVQRTIFVVGDKKQSIYSFQGADPSEFD 447

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            R +   + R       F    L  SFRS A IL++VD+V      A+  +      I H+
Sbjct: 448  RMRAHFKARLDEIDAPFQDAALIHSFRSAAPILSLVDRV-----AAKLGAPGLGDHIEHK 502

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            +    + G V LW  +    +      + +W    D + ++  +S+LA+ +A  I  M+ 
Sbjct: 503  AFFDAKPGRVDLWPAI----EQVKGGDKPAWNDPQDLVSEDHHSSVLAQTVAAQIGAMVA 558

Query: 359  TDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               +    GK+R + A DIL+LVR R  +PL   +   LK    + V G DR  LT  LA
Sbjct: 559  APPMIDVEGKRRALTAGDILILVRSR--SPLFHKIIAELK-RADLPVAGVDRSQLTSPLA 615

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            +KDLMAL RF+ + EDDLS  C+L+SPL   SE  ++ +   R     ++  ++      
Sbjct: 616  VKDLMALCRFLATPEDDLSLACVLRSPLCGLSEAQLYDLAHGRP--GFLWSAMRDR---- 669

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            IS F+     + +L   A F  P+D     L    GR++ I+R G E  D +D  L   L
Sbjct: 670  ISDFEDAHAILKDLRDSADFLKPYDLLERALIRHDGRRRLIARLGPEAEDAVDAMLAQAL 729

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              E     SL      L+     +KR  S    ++R+MTVH AKGLE+PVV L D   + 
Sbjct: 730  AYEATEVPSLTGFAGWLDSGDVQVKRDLSQAEGQIRVMTVHGAKGLEAPVVILPDCAQKQ 789

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                 +  +        D    IW P      + V+D     K+   EE NRLLYV +TR
Sbjct: 790  GRGSSVSLLQP------DGAPLIWAPGKGDEVDAVTDAADLKKQREAEEANRLLYVALTR 843

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A   LI+           +   +WY +V D+    E                   +W+  
Sbjct: 844  AETWLIVAASGQLGKGDDA---SWYKIVADAVAGMEAAALTVEGLEGTGLRLQTGDWA-- 898

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                   E E           +P    +P      +     PS +               
Sbjct: 899  -------EGERPAHATKTRATLPDWATAPAPAPEKDKPARRPSDLGGAKALPG-MGDESA 950

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
                RG I H LL+ +  LP+                    +    +L   TR+L  P +
Sbjct: 951  TAMQRGTITHLLLEHLPRLPQAAWPAAAPGIAALE-SDLSPEALAPMLEEATRVLTAPHL 1009

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
            T   + D+ +EV ++G       D+I  G ID++ ++   +   ++KT+  VP   E  P
Sbjct: 1010 THVFTQDTLAEVEIAGHSPTLNADMI--GIIDRLIVTPTRVTAVDFKTNATVPTAPEDTP 1067

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
               + Q+  Y ++L+  YP++ +   +++     +  +P + +++A    ++ 
Sbjct: 1068 DGLLRQMGAYAELLQPIYPDRDITTAILWSRTATLMELPHDIVSQALRRATSA 1120


>gi|217977592|ref|YP_002361739.1| double-strand break repair helicase AddA [Methylocella silvestris
            BL2]
 gi|217502968|gb|ACK50377.1| double-strand break repair helicase AddA [Methylocella silvestris
            BL2]
          Length = 1151

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 245/943 (25%), Positives = 412/943 (43%), Gaps = 40/943 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI---LKKAQTLQQAS 57
            L+    ++       I +D+        S  ++ ++  +ETG  T        +      
Sbjct: 219  LRKALDVAPGRDVAAIRQDMLEG-GIAPSRWSE-LAAFLETGTKTDCDRAAAFRDAAARH 276

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                 E    +    F T K    K ++T+ +  K+  ++  L   Q+   ++R    + 
Sbjct: 277  AAGDSEGCRDVYLQIFFTDKGEKAKRLLTRGLAAKNLAIEAALYAEQERLDRLRAEEKSA 336

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
               + + A   L   + A Y++ K +  +LDF+DL+  T  LL++ D ++W+ YK+D  I
Sbjct: 337  ATLERSAALGRLVDAIFARYQKLKYERVILDFDDLVAKTLTLLERSD-ASWVLYKLDAGI 395

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            +HILIDE QDTS  QW ++  L  DF VG   + +PRT FAVGDEKQSI+SF GA P   
Sbjct: 396  DHILIDEAQDTSEAQWRILEGLMADFAVGHGRNLAPRTFFAVGDEKQSIFSFQGAAPHMF 455

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
               +R  +++  N G++FS + L  SFRS A +L  VD VF   E+  GL   +   + H
Sbjct: 456  HEMQRKFERKFINGGERFSHVRLTHSFRSAAGVLGAVDSVFGRAESQSGLVAPADVWMGH 515

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
               +      V++W  V     +    +   W    D   +    S +A RIA  I+ +I
Sbjct: 516  EPLKT-LPSLVEIWPSV----GAGGKAENSDWRLPLDFRDESDPPSRVATRIAEKIAALI 570

Query: 358  -----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                        +G  R ++A DIL+LVR R   P    + R LK    + V G DR  L
Sbjct: 571  EPRSGERVHDGESGVLRAVRAGDILILVRTR--GPFFEAVIRALKQK-GVPVAGADRLKL 627

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
             +H+A++DL+A GR  L  EDDL+    LKSPL    +DD+  +        +++  +  
Sbjct: 628  GEHIAVQDLVAAGRAALLPEDDLNLAAALKSPLIGLDDDDLIAL--APGRPGSLFAALLA 685

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
              +      +  +              P  F+  +LG  +GR+    R G E +D +DEF
Sbjct: 686  SPDSRFRPARETLGR----WRARAAARPFAFYASLLGEDQGRRAIEGRLGVEAVDAVDEF 741

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            L   L +E     SL   +++ E     ++R   +  + VR+MTVH AKGLE+ +VFL D
Sbjct: 742  LRLALAHEAEPAPSLAGFLADFETVQREVRRDMESGGDVVRVMTVHAAKGLEAKIVFLPD 801

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T   + S +H   +  +   +      +W P+     +  +   K L++  ++EY RLLY
Sbjct: 802  TCGGL-SAQHDPSVFALEETHLGAAPVVWSPRKAEDCDKAAAARKRLRELAEDEYRRLLY 860

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V +TRA +++ IC        KK  +  W +M+       E      L  +        +
Sbjct: 861  VALTRAEERIYICGFH---GAKKPPELCWANMI-------EATLAPTLQQAPAFWNVEEF 910

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                  P      +E            P  L   +         + PS+           
Sbjct: 911  VLRRLSPGADLAVQETAAPVEGGSLIAPGWLSRRLDPLEEPAAPMRPSSA-LAASDRRAD 969

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                 +    G + H LLQ +   P   R     +Y    AK      ++ LL +   ++
Sbjct: 970  AAGRREALQLGSLTHILLQYLPDQPVEARARAGLAYLAVRAKGLDEAAHERLLQAALAVI 1029

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
              P +       S +EV+V+GKI  P    + + GRID++ +S+  +++ ++KT      
Sbjct: 1030 AAPQLEPLFGAGSRAEVAVAGKIALPGGASVDVIGRIDRLGLSEGEVWVADFKTGAPPA- 1088

Query: 892  EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
                +P +++ Q+++Y   L+  +P + L  +LI+   P++  
Sbjct: 1089 -PGEVPQSYLTQMALYRAALRPLWPERRLRMILIFTEGPQIIE 1130


>gi|315497132|ref|YP_004085936.1| double-strand break repair helicase adda [Asticcacaulis excentricus
            CB 48]
 gi|315415144|gb|ADU11785.1| double-strand break repair helicase AddA [Asticcacaulis excentricus
            CB 48]
          Length = 1168

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 260/975 (26%), Positives = 443/975 (45%), Gaps = 47/975 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLW-PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
            L  R  L    + E +       L +  + ++ + ++     GN  + +    L +A + 
Sbjct: 210  LFKRLDLDPPMTPEQVVDAFAEQLNWDMMPELARSLATVNTKGNQGLSETLLRLSEAHKG 269

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                + F  L + F T K  P+K + + +  +     ++ L++ ++   +  ++    + 
Sbjct: 270  GEPFD-FEALYAVFYTAKGEPRKELCSTKSTQAD---RDTLERWREPLAEAIEKRKAAET 325

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
              +TL +L L +  +A Y++ K++   LDF+DLI     LL    +S W+ +K+D  + H
Sbjct: 326  ALNTLYTLQLFEDFSAIYQDLKRRTGALDFQDLISRAKRLLSGASMSQWVLFKMDGGLEH 385

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH----SSPRTLFAVGDEKQSIYSFHGAEPK 235
            +L+DE QDTS  QW+++++LT DFF G +         RT+FAVGDEKQSIY F GA+P 
Sbjct: 386  VLVDEGQDTSGDQWDIVKALTGDFFAGASAPVFQARIERTVFAVGDEKQSIYGFQGAKPD 445

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
              L  +   Q  A  A + F + +L  S+RS   +L  VDK F  P+ ++ L+  +   I
Sbjct: 446  LFLGMRTYYQTLAKQAKKPFVVPQLVQSWRSLPQVLGFVDKAFDGPDLSEALN-FTADPI 504

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H + R  +  TV+LW  +        +   +   +  D+    + A  LA+++A+ I+ 
Sbjct: 505  IHDAGRSERSATVELWPPIYPLAVPDLDDSDDENVAPVDA-SGVAPAKRLAQQLAFHIAQ 563

Query: 356  MIGTDTIF---SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
             I         S+ K R + A D+L+LVRKR    L   + R LK    + V G DR  L
Sbjct: 564  DIRQGRSVICKSSRKARPMHAGDVLILVRKRD--ALFEHIIRELK-QAGVPVSGADRLKL 620

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            +DH+A +DL AL R  L   D LS   +L+SPL + SEDD+F +   R E  ++++ + +
Sbjct: 621  SDHIAFQDLRALMRVCLQAGDSLSLAAVLRSPLCDLSEDDLFTLT--RVEKASLWQALNR 678

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG-----RQQFISRFGNEVID 527
             A     +F     +I   +  A   +  DF  L+L  + G     RQ+F++R G E  D
Sbjct: 679  LA-EDNPRFSEAQNFIGWALSEAPQRTAFDFLGLVLNRRDGAGRTQRQRFVTRLGVECED 737

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            VLDE LN  L+ E      L + ++  E     IKR      + VR+MTVH +KGLE+P 
Sbjct: 738  VLDETLNLALKGEGVGAIGLIDFLNLCEFNASEIKREQEEGGDRVRVMTVHGSKGLEAPW 797

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V L        +      +       DD  + +           VS L         +E 
Sbjct: 798  VVLPMAPGFKSTRNDDLLLTS-----DDGDLLLSARGRDGDPQAVSALKAVRSLREAKEG 852

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND--ERVKKIKLTNSIN 705
             RL YV +TRA D+L +C +  +          WYD+  D F     E V  ++L   + 
Sbjct: 853  LRLFYVALTRARDRLTLCGYRGSRAANG-PFPDWYDLAQDGFDRLPREAVTAVELDTVVE 911

Query: 706  KDEWIAYEWSTHHPENTPLERE----ETIKQLMDEQKIPKKLFSPIKNDINEPYILNP-- 759
                   E S         ER        +    +  +P  + +    D     +     
Sbjct: 912  FGAPKDQESSEKAELLLFGERAPLMSAEAQAAQTQTGLPAFVTAAPTPDPEADVVWRAVS 971

Query: 760  --STIDTKGKTNLESLLSDNQT---FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
              S  D   +    S L++ +    F RGL IHKL +++  LP   R N    +  +   
Sbjct: 972  QLSDEDRADEDRAPSPLAEQRGQGRFGRGLKIHKLFEILPALPVADRDNVAARWLKRQ-P 1030

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI--NCPKKDIIISGRIDQIS 872
                 + + +  ++  +L +     A   +S  EV+++G++  N   + + +SGRID++ 
Sbjct: 1031 DLDDAQREEIRQAVMGVLTDARFADAFGPNSRPEVALAGQVGVNARGEAVFMSGRIDRLV 1090

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            I  + + + +YK++   P   E     +  Q++ Y  +L+  YP+KS+   L++   PK+
Sbjct: 1091 IGPERVLVIDYKSNRPAPDTAEEAAADYQRQMAGYVALLRQIYPDKSVEAALLWTDGPKL 1150

Query: 933  FIIPQNKLNKAFAEI 947
              + +  +N   +EI
Sbjct: 1151 TPLSEALVNLRLSEI 1165


>gi|154247228|ref|YP_001418186.1| double-strand break repair helicase AddA [Xanthobacter autotrophicus
            Py2]
 gi|154161313|gb|ABS68529.1| Double-strand break repair helicase AddA [Xanthobacter autotrophicus
            Py2]
          Length = 1167

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 253/955 (26%), Positives = 419/955 (43%), Gaps = 31/955 (3%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
              L  + S   +   +   P+   S+     +    +   T   +   L  A++      
Sbjct: 237  LDLPADASVADLEVQMLASPHLPHSEWASAAAELAASDKATDRTRGDDLLAAAEAGDTAS 296

Query: 65   RFSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              +     F   +     +N+ T+    ++P L  +L+  +D    + D+    +  + T
Sbjct: 297  GLAAWRRVFFGSEGPRSDRNLFTKGFADRAPGLAARLRDERDRLAVLADQLLGARTLERT 356

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
             A+LTLA      YE  K    +LDF+DLI+    LL  +    +++YK+DQ I+HIL+D
Sbjct: 357  EAALTLAAEAVRRYEAEKAARGLLDFDDLIVKAAQLLSDQP--TFVQYKLDQGIDHILVD 414

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            E QDTS  QW V++ L +DFF G        RTLF VGDEKQSI+SF GA+P+     + 
Sbjct: 415  EAQDTSPQQWRVVQGLADDFFSGAGAREDVTRTLFVVGDEKQSIFSFQGADPRAFGEMRS 474

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
               ++     Q    +ELP SFRS   +L  VD++FS PE   GL+ D+   + H + R 
Sbjct: 475  TFARK--AGPQALRRVELPHSFRSAPGVLEAVDQIFSRPEAHDGLTLDAVAPV-HAAIRA 531

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V++W         +   Q ++W    D  P +   S LA+RIA  I   I     
Sbjct: 532  DAPALVEIWPTTTP----EPATQPDNWRRPLDEAPVDDPVSRLAQRIAGFIQAGIAKGLA 587

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN--DYKISVVGNDRFILTDHLAIKD 420
              + + R ++A D+LVLVR+R    +   + R LK   D ++ V G DR ++ +H+A  D
Sbjct: 588  IPSRQGRPMRAGDVLVLVRRR--GRVFEAVIRALKELKDAQVEVAGADRLVVAEHIAALD 645

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            LMALG  ++S +DDL+   +LKSPLF  ++DD+  +CT R         +         +
Sbjct: 646  LMALGDTLVSPDDDLALAALLKSPLFGLTDDDLLALCTGRSGRL-----VDALKAAPDPR 700

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                   +      A    P DF+  +LG   GR+  ++R G E  DVLDEF+      E
Sbjct: 701  HAAAWARLAAWRGEAALLRPFDFYARVLGRDGGRRAMLARLGPEAADVLDEFMVLARAYE 760

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                +SL   ++ L +     KR   +  NEVR+MTVH AKGLE+P+V L DT     + 
Sbjct: 761  STEPASLAGFLAYLRRGGAETKRDMESGRNEVRVMTVHGAKGLEAPIVILADTVDMPKAR 820

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                 + +      +  +P+  P+       ++           EE+ RLLYV +TRA D
Sbjct: 821  TAGGLVSV---AGPEGEVPVLAPRKAEDPERLAAARATAAARELEEHRRLLYVALTRAED 877

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             +I+C     S  K           Y+        +  +      + + + +        
Sbjct: 878  AVIVCGAETRSPAKDKAHARPEGCWYELVRAALAPEADEQNALGFEGQVLRWNKGPGLAV 937

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--ESLLSDNQ 778
              P                   +F+        P +L PS  +  G + L      +   
Sbjct: 938  AGPAAAPSAAGAEPALP-----IFANPPPPEAAPRLLRPSKTEAAGPSPLRTPGPETALS 992

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               RG ++H+LL  +  LP  +R           A     + ++ +L     +L +  + 
Sbjct: 993  PLVRGDLVHRLLAGLPDLPAQERAAAGLRLLRHAADKVADEIHQEVLEEALGVLGHAPLA 1052

Query: 839  TAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                  S +EV V G++   +  D  +SGRID+++++   + + ++KT    PQ  E + 
Sbjct: 1053 DLFGAGSRAEVPVIGRLKAQEGADFHVSGRIDRLAVTPDLLIVADFKTDRIPPQRPEDVA 1112

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
              ++AQL++Y  +L   +  ++    L+Y + P+VF +   +L  A A +    P
Sbjct: 1113 EAYVAQLAVYGALLSQVFAGRAFEARLVYTTGPRVFRLESARLQAALARLGLTSP 1167


>gi|126460955|ref|YP_001042069.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
            17029]
 gi|126102619|gb|ABN75297.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC
            17029]
          Length = 1106

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 221/956 (23%), Positives = 383/956 (40%), Gaps = 65/956 (6%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  +G+  +E    +   ++       ++    +  ++E G+    K A  L+  S    
Sbjct: 209  RALYGVEGDE--AALLAQVFLGGE---AEWMPALIAALEAGSANDQKAAAKLRLLSFASP 263

Query: 62   IEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
                 + L    LT     +       +  T+        L ++L          R    
Sbjct: 264  TTATLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGALGPLADRLDALMRRVEAARPVRC 323

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                 +        A      Y+  K     LDF+DLI     LL    V+ W+ +++D 
Sbjct: 324  CLLAAERARLIHAFAGVFLPLYQARKAARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDG 383

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             I+HIL+DE QDTS  QW+VI  L ++F  G+      RT+F VGD+KQSIYSF GA+  
Sbjct: 384  GIDHILVDEAQDTSPDQWKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGADVA 443

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
               R +    +R   A ++   ++L  SFRS+  IL +VD  F  P       +     +
Sbjct: 444  AFDRMRAEFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRR-----QALGGEV 498

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            RH + R    G  +LW  V +       P+ E+W    D +  E  A+ LAR++A  I  
Sbjct: 499  RHIAFRGDMPGRAELWPLVEAA----EEPEPENWFDPVDLVSDEHHAARLARQVATRIRA 554

Query: 356  MIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            MI     I   G  R + A D L+LV++R D  +   + R  K + ++ + G DR  L  
Sbjct: 555  MIEAGVQIPQPGGFRPVAAGDFLILVQRRSD--IFGEIIRACK-EARLPIAGADRLKLGA 611

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             LA++DL AL  F+ + EDDLS   +L+SPLF +SE ++F +   R        Y+ +  
Sbjct: 612  ELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEGELFDLAHGRE------GYLWRRL 665

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                +     +  + +L   A F  P D     L     R++ ++R G E  D +DE L+
Sbjct: 666  YDREAAHPATVAILRDLRDQADFLRPFDLIERALTRHDRRRRLLARLGEEAEDGIDELLS 725

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L  E+    SL   ++ L+     +KR   A    +R+MTVH +KGLE+P+V L DT 
Sbjct: 726  QALAYERTDVPSLTGFLTWLQTDEVEVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTA 785

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +    +             + G  +W   +      ++   +  +     E  RLLYV 
Sbjct: 786  DRKPRERDEL-------FTLEGGARVWKTPAAESPPQIAAAREARRARDAAENLRLLYVA 838

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            MTRA   LI          K      W+D++          ++      +++  W     
Sbjct: 839  MTRAQCWLIAAAAG-----KLETGGAWHDLIRQGMEAAGAERRDDGALVLDEGLWPPAAP 893

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                                  +                  +L+PS +        +++ 
Sbjct: 894  QASAAAAAARPVLPAWALAPAAEPPAAP------------EVLSPSALGGAKALPGDAMP 941

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
            ++      G  +H+LL+ +   P    +                 +   +L     +L  
Sbjct: 942  TEE-ALAHGSAVHRLLEHLPLHPPEGWEAAARGLL------PDLPDVAPVLAEARAVLSA 994

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
              +  A+   +  EV+V+ K+        +SG ID++ +    +   +YKT+  VP   E
Sbjct: 995  EHLAEALVPHALLEVAVTAKVA----GRRLSGTIDRLVVEPDRVLAVDYKTNRVVPDRPE 1050

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
             +P   + Q+  Y + L   YP +++   +++    ++  +P++ +  A    +T 
Sbjct: 1051 EVPEGILRQMGAYAEALAQIYPGRTIETAILWTQAARLMRLPRDIVRSAMVRATTT 1106


>gi|329847172|ref|ZP_08262200.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum
            C19]
 gi|328842235|gb|EGF91804.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum
            C19]
          Length = 1174

 Score =  516 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 247/969 (25%), Positives = 427/969 (44%), Gaps = 38/969 (3%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L +  GL    + +            +   +       +     T  K  Q      +++
Sbjct: 225  LFHSLGLDGVCTSQECLDAY--ANTLEWHLLEDLGQTLLSGTTATNQKAGQAFLDLYESK 282

Query: 61   CIEE--RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                   F  +   FLTQ  T +K+I T+            L +  +E + + DR    +
Sbjct: 283  ISGRPFEFEEIRGIFLTQAGTLRKSIYTKGTAPAD---ARYLDRMAEEAVALADRLKAVE 339

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +  +TL +L L +  +  Y   K+    LDF DLI  T  LL     + W+ +K+D  ++
Sbjct: 340  IASNTLDALRLFEIFSFVYLSEKRGEGALDFTDLITYTKKLLDDPTHALWVLHKLDGGLD 399

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW ++ +L+ DFF G+    + RTLFAVGDEKQSIY F GA+P+  L
Sbjct: 400  HILVDEAQDTSEEQWIIVDALSSDFFSGEGVTRTIRTLFAVGDEKQSIYGFQGADPREFL 459

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            + +    +RA + G      +L  S+RS  +IL  VD VF   +    L+  S+  I+H 
Sbjct: 460  KARGQISQRAHDGGANLVEPQLIDSWRSLPEILGFVDAVFKADDVQHALN-FSSDPIQHI 518

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R    G V+LW  V      +     +   +  D   +   +  LA++IA TI + I 
Sbjct: 519  ARRSDASGVVELWPVVRPMAAVETTADDDDEQAALDDPGRNPPSKRLAKQIAATIRSEIT 578

Query: 359  TDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                  +    ++R + A D+L+LVRKR    L   + R LK    ++V G DR  L DH
Sbjct: 579  AGRTIYDKALKRRRTVHAGDVLILVRKRDH--LFEHIIRELKI-AGVAVSGADRLKLGDH 635

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            +A +DL AL R  L   D LS  C+L+SPL + SE D+F +   R               
Sbjct: 636  IAFQDLRALLRVCLQPMDALSLACVLRSPLCDLSEQDLFDLAHDRQMPLWSALLHHPATE 695

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG-----RQQFISRFGNEVIDVLD 530
              +   +     +      A   +  DF   +L  +       RQ+F++R G+E  DVLD
Sbjct: 696  GPVHDARIF---LLWAQKAAWQLTAFDFLARVLNRRDFAGRSVRQRFLTRLGDECEDVLD 752

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            E L   L+ E +   +L   +   E     IKR      + VR+MTVH +KGLE+P V +
Sbjct: 753  ETLALALKGEGSGAVALSACLDLFEFQASQIKREQEEGGHAVRVMTVHGSKGLEAPWVIV 812

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  +      +K  ++ +  D   + +     K+   + +D+        ++E  RL
Sbjct: 813  P-----IGPQYGARKEDLILTGEDG-QMYLCAGGKKADTAVTADIRDGRALREEQESLRL 866

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI-KLTNSINKDEW 709
             YV +TR+ D+L +C ++ T      N  +WYD+  D+F   E   ++  L N  +  E+
Sbjct: 867  FYVALTRSRDRLTVCAYTGTKPATTGNFPSWYDLASDAFDRLETTSEVMPLVNPFDDGEY 926

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------D 763
                    H +++     +   +  +       L     +DI        S +      +
Sbjct: 927  YNEALVRVHGQHSEALTAQARLREPEVPLPDFALAMVTHDDIETERWAAISQMGDEDRTE 986

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            T+   +    L     + RG +IHKL +++  +    R      Y T+ A      + + 
Sbjct: 987  TEIAPSPLQTLGSLGRYRRGNLIHKLFEILPDIAPDNRMAIAQRYLTRQAD-LTDAQREE 1045

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC--PKKDIIISGRIDQISISQQNIFIF 881
            +  ++  +L +     A    S  EV+++G++      + I++SGRID++ ++   + I 
Sbjct: 1046 MTDAVMTVLTDARFAEAFGPQSRPEVALAGQVGVNPRGEAIMLSGRIDRLVVTDDRVVII 1105

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
            +YK++   P   E     +  Q++ Y  +L+  YP++++   L++   P++  +P+  + 
Sbjct: 1106 DYKSNRPAPDRAEDAAVAYQRQMAGYVALLRQVYPDRAVEAALLWTDGPRLTPMPETLVQ 1165

Query: 942  KAFAEISTK 950
                EI ++
Sbjct: 1166 LRLEEILSR 1174


>gi|16127768|ref|NP_422332.1| UvrD/Rep family helicase [Caulobacter crescentus CB15]
 gi|13425272|gb|AAK25500.1| helicase, UvrD/Rep family [Caulobacter crescentus CB15]
          Length = 1203

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 250/965 (25%), Positives = 422/965 (43%), Gaps = 50/965 (5%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
             R G     S E +      +    +       S+  + G     K A+ L   ++    
Sbjct: 270  RRCGFDGPTSAEDLATRA--MARLDLPAWRAVASVLFDGGGKQDAKSAEALAAVAR--DP 325

Query: 63   EERFSLLSSFFLT--QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
            +    L      T   + TP          K   DL+E L   Q +    R++    ++ 
Sbjct: 326  DATLDLALRALFTEGGEGTPATWPAKTSGLKSREDLREALLLEQAKLEAAREQVRAARVA 385

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + T  +L LA      +   K+    LDF DLI  T  LL ++  +AW+ YK+D  I+HI
Sbjct: 386  EDTQNALLLAGLYIERHMAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHI 445

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFF-----VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            L+DE QDT+  QWE++R+LT DFF      G +   + RTLF VGDEKQSIYSF GA+P 
Sbjct: 446  LLDEAQDTAPEQWEILRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPT 505

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTT 294
            R+L E +    R    G     + L +S+RST ++L+ VD +FS P+  +G+        
Sbjct: 506  RLLEETQGYISRIEAVGAVGKGVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDL 565

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            +RH   R G  G V LW              +E+W    D   + S+   LA  IA    
Sbjct: 566  VRHELFRHGHPGCVDLWPLTREL----PGEDREAWEKPLDEEGERSANRRLAEAIAAETR 621

Query: 355  NMIGTD---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             ++           G+ R   A DILVLVR+RK   L   + R LK    + V G DR  
Sbjct: 622  AILDRGDAVFDKDLGRHRAAHAGDILVLVRRRK--ALFEEIIRALK-RRGVPVAGADRLA 678

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            L+ H+A +DL+ALGRFIL  +DDL+   +LK+P     +DD++ +   +    T++  + 
Sbjct: 679  LSSHIAFEDLVALGRFILFPDDDLTLAALLKTPFCGLGDDDVYAL--AKGRRGTLWVELT 736

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVI 526
            + +     ++      +   +   +   P +F+   LG         R + ++R G E  
Sbjct: 737  RRSEE-RPEWAAARAVLDWALAEGRRRQPFEFYAGWLGLTDADGRSHRAKVLTRLGAEAE 795

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            + LDEFL   +  EQ     L+ L+++       +KR       EVR+MT H +KGLE+P
Sbjct: 796  EALDEFLAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVMTAHGSKGLEAP 855

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL +T  +  +          P L  + G  +W    K+   + +   K  +    +E
Sbjct: 856  IVFLPETTVKRGAGGS-------PLLVTEDGALLWCASGKNDCAVSAKARKLREDKESQE 908

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV +TRA ++LI+C   +   +       WY     +F + +    ++       
Sbjct: 909  ALRLLYVALTRARERLILCGRIDARTKDDKVGG-WYAAARAAFAHPDIAPGVRTIGDGET 967

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                    +       PL               P  + +    +        PS ++   
Sbjct: 968  --------AFLRYGPDPLGAPRVAPATAAVAAPPAWIMAQATPEPAAARYAAPSRLEDTA 1019

Query: 767  KTNLESLLSDNQTF---NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +    S L+         RG +IHKLLQ++  LP  +R +          +     +   
Sbjct: 1020 RVPAPSPLARIAGLGRYRRGELIHKLLQLLPDLPPAQRPDAARRILAAE-RDLTDTQRTE 1078

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
            +  +   +LE+         +S +EV+++G      + + +SGR+D++ +    + + +Y
Sbjct: 1079 MASAAFEVLEDARFAAVFGPNSRAEVALAGTSAHLPQGLAVSGRVDRLVVDDARVLVVDY 1138

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            KT+   P  IE     ++AQ+++Y  +L++ +P +++   L++   PK+  +P+  +  A
Sbjct: 1139 KTNRPSPDRIEDADTAYLAQMAVYVAVLREVFPGRTVEAALVWTDGPKLMPVPEKVMALA 1198

Query: 944  FAEIS 948
             A ++
Sbjct: 1199 LARLA 1203


>gi|254563798|ref|YP_003070893.1| helicase-exonuclease type V protein family [Methylobacterium
            extorquens DM4]
 gi|254271076|emb|CAX27083.1| putative helicase-exonuclease type V protein family [Methylobacterium
            extorquens DM4]
          Length = 1147

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 265/952 (27%), Positives = 439/952 (46%), Gaps = 43/952 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L     L    S E I  ++         D  +     + TG  T  K A  L +A    
Sbjct: 225  LPRALALPDGASVETIEAEILEGSSL--GDWREIAG-RLRTGKATDEKLADGLVEAHAAL 281

Query: 61   CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               +  +   S F T K  P+  K+  T+ + +   D+K+ L   Q   I + D     +
Sbjct: 282  GAGKALAPYRSVFFTDKDEPRAAKSFGTKAVPE---DIKQALLDEQARLIPLFDALRAAR 338

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                TL    LA  ++   E  K +   LDF+DLI  T DLL +   ++W+ YK+D+ ++
Sbjct: 339  ALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIHKTLDLLSR-VGASWVLYKLDRGVD 397

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H+L+DE QDT+  QWE++R+LT +F  G+      RT FAVGD KQSIYSF GA+P+   
Sbjct: 398  HVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTRFAVGDPKQSIYSFQGADPREFE 457

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-IRH 297
              +R   + A  AG  F+ + L LSFR+ + +L  VD VF +P++  GLS D+      H
Sbjct: 458  LTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVDAVFGVPDHFAGLSFDAGAPGTVH 517

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S+R G  G V+LW         + +    +W +  D+    + A ++ARRIA  +    
Sbjct: 518  ASARAGVPGAVELWGIEEPAEAEEPD----AWAAPVDAPEPNAPAIVVARRIARAVKTWT 573

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                   +   R+ +  D+L+LVRKR  +     + R +K    + V G DR  +  H+A
Sbjct: 574  TKG----DACGRIWRPGDVLILVRKR--SAAFEEVIRAMK-GLGVPVAGQDRLEVAGHIA 626

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            + DL+A+GR  L   DDL+    LK+PL   ++DD+ +IC +R   ET+ + + + A  G
Sbjct: 627  VLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFAETLEDALTRHAQAG 686

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                   +  +   I +A    P  F+  +LG   GR + ++R G E  D +D FL    
Sbjct: 687  DGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGGEAGDAIDVFLAQAS 746

Query: 538  RNEQNSY-SSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              E       L   +++        +   ++KR   +  NEVR+MTVH AKGLE+PVV +
Sbjct: 747  DAENGGDAPCLDAFLADYIVRPGRGRSGLSVKRDLESGRNEVRVMTVHGAKGLEAPVVVV 806

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            +D    +   ++   +  + S  D P  P+W                 L+   +EE+NRL
Sbjct: 807  IDGCEPL--GRNDPPLLGLDSTADGPLPPVWTGGRTQDCAATLAARSALQARAREEHNRL 864

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV MTRA+D L+I  +   + E  +   +W +MV           +   T+      W 
Sbjct: 865  LYVAMTRAADHLVIAPYRGATRETPA---SWCEMVRIGLERGLGDGEAVETDHGPITIWR 921

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTKGKT 768
                ++           E        + +P  LFS    +      L+PS       G+ 
Sbjct: 922  DGSAASLAAAAADTAPPE-------PETVPDWLFSAAAPEAEAAPPLSPSGALGAADGQR 974

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                 L D +   RG ++H LL+ +  +   +R      +    A      + K+L+ ++
Sbjct: 975  QPRRRLGDAEARRRGALVHSLLEHLPRIEPARRAEAADRFARARAPTLEEAKRKDLVRAV 1034

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             RL+E P + +  S  + +EV++SG+I     +  ++GRID++ +    + + ++KT   
Sbjct: 1035 LRLIEAPDLASLFSDQARAEVALSGRIVVEGIERDVTGRIDRLVVEDGRVILCDFKTGR- 1093

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
             P +   +P    AQ+S+Y ++    +P+ ++V LL++ S P V  +    L
Sbjct: 1094 PPADDAPLPEREAAQVSLYARLAAAIWPDHAIVALLVWTSGPVVRRVEGALL 1145


>gi|114328674|ref|YP_745831.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114316848|gb|ABI62908.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 1159

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 255/955 (26%), Positives = 431/955 (45%), Gaps = 42/955 (4%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +   G+  ++  E +      + +  +  + +    + E G+ T+ ++A  +        
Sbjct: 217  RRALGVPGSQGEEALLATA--VEWTAIGKVREAARDAFENGSNTVRERAGQMLAWLSLSP 274

Query: 62   IEE--RFSLLSSFFLTQKFTP--QKNIIT---QEINKKSPDLKEKLKKSQDEFIKIRDRF 114
             E   R+   +S FLT K  P   K +           +   +E L       + IR   
Sbjct: 275  AERQTRWEEWASLFLTAKGEPCSPKTLFNENKANRGTSADTSRETLVDESHRIVSIRQTL 334

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            +  ++   + A   LA  +   Y + K +  ++DF DLI  T+ LL++   + W+ YK+D
Sbjct: 335  HAIRLASLSAALTRLAIPVAEAYAKDKARRGLVDFSDLIGRTSALLREPGAA-WVLYKLD 393

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH---SSPRTLFAVGDEKQSIYSFHG 231
              I+H+L+DEVQDT+  QWE+  +LT +FF G +       PRT+FAVGD KQSIYSF G
Sbjct: 394  GGIDHLLLDEVQDTAPEQWEIAGTLTAEFFAGLDDRAEQGKPRTVFAVGDPKQSIYSFQG 453

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A+P+     + I   R    G ++    L +SFRSTA +L + D VF+ P   QG+  + 
Sbjct: 454  ADPQAFRHWRGIMAHRVQQIGYEWRDRPLTVSFRSTAPVLALTDAVFADPLARQGVI-EP 512

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
              T+RH   R    GTV++WE V +       P + +W    +     ++AS+LA R+A 
Sbjct: 513  EETLRHLPDRAEDAGTVEIWEPVQTPET----PTRPAWQPAEEYGTHTTAASLLAGRLAD 568

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             I++ IG        + R I A D L+L+R+RK       L         + V G DR  
Sbjct: 569  WIASRIGQ---TLPSENRPIHAGDYLILLRRRK---PFAPLLERALKLRGVPVAGLDRLP 622

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            LT   A+ DL+AL   +L  +DD++  C+L SPL   S+D + ++   R +T        
Sbjct: 623  LTSQPAVADLLALCDTLLLPDDDMALACLLTSPLGGLSDDSLMELALGRRDTLW---GTL 679

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            +      + +     ++ +++    + +PH   +  L   +GR +  +R G E  + +DE
Sbjct: 680  RKRRKERTAWDQAASFLEDMLGQVDYTTPHALLSAALVRHRGRARLFARLGAEASEPIDE 739

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
             LN  +R  Q    SLQ  +  L +  P +KR  S+    VRIMTVH +KGLE+P+V L 
Sbjct: 740  LLNAAMRYAQLHPPSLQGFVHWLRRSAPEVKREMSSGGQAVRIMTVHGSKGLEAPIVILP 799

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            DT S   +      +           +P+W P    + +  + L    + + QEEYNRLL
Sbjct: 800  DTVSTPRTENS---ILWTEDPETGLSVPLWKPNQDFQCDSFAVLEAKEQAARQEEYNRLL 856

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YV +TRA D+L++C      N K     +WY  +          + +   +         
Sbjct: 857  YVALTRARDRLLVCGWLGKEN-KPPPDESWYAAIRRGMERLPNAETVGTDHGEVIRLTSP 915

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
             + +                      + P    +P   +   P  L PS  D      + 
Sbjct: 916  QQRAAQQARTDISTP--VQAPPAWMGQAPDWQPAPRPAEPVRPEPLAPSRPDNADLGPVP 973

Query: 772  SL-----LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
            +            F RG +IH+LLQ +  LP  +R+  +  +  +        E  ++  
Sbjct: 974  AADSPLIADRRARFRRGQVIHQLLQHLPLLPAKEREAAMKRFLLQTL----PSEADHVAK 1029

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
             I+ +L++P +      D   EV ++G I    K  +I G +D++++  + I I +YKT+
Sbjct: 1030 QISAILDHPRLAALFGADGRGEVPLTGVIGPDDKPQVIGGIVDRLAVLPERILIADYKTN 1089

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
             H P  I   P  ++ Q++ Y  +L   YP++ ++C LI+    ++  +P   L+
Sbjct: 1090 RHPPASISETPVLYLRQMAAYRAVLSSIYPDRDVLCALIWTETGRIDTLPSELLD 1144


>gi|83859061|ref|ZP_00952582.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633]
 gi|83852508|gb|EAP90361.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633]
          Length = 1219

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 252/1002 (25%), Positives = 420/1002 (41%), Gaps = 85/1002 (8%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ--TQCI 62
             G+  +   + +  + W      V  +   +S     G  T    A+ L +      +  
Sbjct: 232  LGVDPDLDVDQVLAEAWGDT--DVGALEAALSALQTGGTKTDQASAEALLEILDVAEEDS 289

Query: 63   EERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEF----IKIRDRFNT 116
             E F     F  T+    +K  +I +++       L         E      ++  +   
Sbjct: 290  AEAFDYYIDFLTTKTGALKKPKSIYSKKTGDSYRILVTLFGDEGAEIHRVGDEVLPKLAA 349

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                + T A+L +A  L   Y+    +   +DF DL+     LL   +   W  YK+DQ 
Sbjct: 350  ATANRMTRAALRIADALLNDYQARLNRLRRVDFSDLVERARALLTDSEARGWALYKLDQG 409

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS------PRTLFAVGDEKQSIYSFH 230
            ++H+L+DE QDT+  QW VI +LTE+FF G   + +       RT+F VGDEKQSIYSF 
Sbjct: 410  LDHVLVDEAQDTAPEQWAVINALTEEFFAGDGAYETSHPDALRRTVFCVGDEKQSIYSFQ 469

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI-----PENAQ 285
             A+P+  L +++  Q  A  A  +F    L +SFRS+ ++L  VD  F+          +
Sbjct: 470  NADPREFLAQRQRLQTEAKLARLRFESPPLNVSFRSSPEVLAAVDACFAAEAAVLNTERK 529

Query: 286  GLSEDSTTTI--------------------RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
             L E   T +                     H ++R+   G V++W  V      Q +  
Sbjct: 530  DLVEGLETKLLMSDPETQQTRDPLAFHRYDGHVAARVNAPGCVEIWPAVPKPEGGQEDEL 589

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK----RVIQAKDILVLVR 381
                    D+  ++S+ + LA  +A  I+++I          K    R   A DILVLVR
Sbjct: 590  D---LRPVDAERKDSARNQLAEAVASEIADIITRGDGVWEEGKPWRLRPAHAGDILVLVR 646

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
            +R    L   + R LK    + V G DR  L D L ++DL++L RF L  EDDLS   +L
Sbjct: 647  RRGG--LFEEIIRRLKLK-NVPVAGADRMTLPDQLVVEDLLSLARFALLPEDDLSLAEVL 703

Query: 442  KSPLFN--------FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
            KSP F+          +D +F +   R     +++   K       +F+     +     
Sbjct: 704  KSPFFHPVRAVTPPIDDDALFDL--SRQPGARLWD---KLRRSDDPRFRDARAALETARA 758

Query: 494  IAQFCSPHDFFTLILGAKKG-----RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              +  +P+ FF   L            +  +R G E  D  +EFLN  L +E     SL 
Sbjct: 759  RVETDAPYAFFARFLTETSPTGESRLARLYARLGEEARDPAEEFLNRALAHEVEGAPSLS 818

Query: 549  ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              ++ ++     IKR   A   EVR+MTVH AKGLE+P+VFL DT            +  
Sbjct: 819  RFVAAMQADAVQIKREMEAGRGEVRVMTVHGAKGLEAPIVFLPDTT--QLPRDRSGGLFA 876

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                       +W P  K    +++ + +  +     EY RLLYV MTRA D+LI+C H+
Sbjct: 877  HEEAG-----LLWSPDMKMPPPLLASIAERKELDADGEYQRLLYVAMTRARDRLIVCGHT 931

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
            +    K           +     D R  K  L     ++ W A     +  +  PL  + 
Sbjct: 932  HGVAGKVDAGSWHDRCQHSWTGADWRPVKTALEGVAAENGWEAAPGLRYGADPKPL--KA 989

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT------FNR 782
            +         +P     P   D      + PS +  + ++  E              F R
Sbjct: 990  SAAPEAAPVTLPGWAIQPPPADPAPVRSVAPSKLLGEEESGFEPASLSPLAKGGQSRFRR 1049

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            G +IHKLLQ +  + E +R+     Y           + + +     R++ +P       
Sbjct: 1050 GELIHKLLQTLPDIEESRREASALRYLENQTD-LDDAQRREIASETLRVISDPTFAALFQ 1108

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
              S +E +V+G+       ++I+G+ID++ ++   + I +YKT+   PQ++E +P  ++A
Sbjct: 1109 PGSRAEAAVAGQAAGLPGGMVINGQIDRLVVTDHEVLIVDYKTNRPPPQKVEDVPRAYLA 1168

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            Q++ Y  +L+  +P K + C L++   P++  +P  +++   
Sbjct: 1169 QMAAYRALLQGLHPEKPVRCALLWTVAPRLMELPPERMDAVL 1210


>gi|170749778|ref|YP_001756038.1| double-strand break repair helicase AddA [Methylobacterium
            radiotolerans JCM 2831]
 gi|170656300|gb|ACB25355.1| double-strand break repair helicase AddA [Methylobacterium
            radiotolerans JCM 2831]
          Length = 1165

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 256/962 (26%), Positives = 436/962 (45%), Gaps = 44/962 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS--- 57
            L    GL+  ES E I   +         +    +  ++ TG     K A  L+ A    
Sbjct: 229  LHGALGLAAEESAERIEAAILEGGPGCRPEERAALVAALRTGKANDEKLADALEAAEAER 288

Query: 58   ----QTQCIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIR 111
                      E  +L  S F TQK  P+   ++ T+ +   +      L   +D    + 
Sbjct: 289  VRAADLPERAEALALYRSVFFTQKDEPKADSSLGTKGVPAGAK---AALLAERDRLEPLF 345

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            DR    +    T A   +A  ++   E  K +   LDF+DLI    DLL +   + W+ Y
Sbjct: 346  DRLRAARAHARTQALFQIAAEIHRRVEAQKARLGALDFDDLIHKALDLLGR-VGAGWVLY 404

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            K+D+ I+H+L+DE QDT+  QW ++R++T++F  G+      RT FAVGD KQSIY F G
Sbjct: 405  KLDRGIDHVLVDEAQDTNPEQWAILRAITQEFAAGEGARIGSRTRFAVGDPKQSIYGFQG 464

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS-ED 290
            AEP+     +      + +AG  F  + L LSFRST  +L  VD VF++  + +GLS ED
Sbjct: 465  AEPREFALTRASWIAESRSAGLTFEDVPLTLSFRSTGLVLRAVDAVFALDAHNEGLSFED 524

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
            +  T  H S+R G  G V+LW       + +   + ++WT+  D+    + A + ARR+A
Sbjct: 525  TVRTTVHASARPGAPGAVELWPI----AEPEPAAEPDAWTAPVDAPETSAPAIVTARRVA 580

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              +     T     +   R+ +  D+L+LVRKR   P    + R LK    + V G DR 
Sbjct: 581  QAVRAWTTTG----DATGRIWRPGDVLILVRKR--GPAFEEVIRALK-GIGVPVAGQDRL 633

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             ++ H+A+ DL+A GR  L   DDL+    LK+PL   ++DD+ +I  +R   ET+ + +
Sbjct: 634  EVSAHIAVADLVAAGRAGLLPADDLTLATALKTPLVGLTDDDLVRIAARRDLAETLEDAL 693

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
             + A  G +  +  ++ +   I +A    P  F+  +LG + GR + ++R G E  D +D
Sbjct: 694  HRHAEAGDAAARRGLEALSGWIALAGLHGPFGFYARLLGPQGGRAKLVARLGGEAGDAID 753

Query: 531  EFLNFTLRNEQNSY-SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
             FL    + E      SL   ++     +   T+KR   +  +EVR+MTVH AKGLE+PV
Sbjct: 754  VFLAAAAQAETGEDAPSLGGFLARYVGAEAGHTVKRDLESGRDEVRVMTVHGAKGLEAPV 813

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V ++D               +     +    P+W                 L    ++E+
Sbjct: 814  VVILDGCE---PLGRNDPPLLPLPATEIALPPVWSGGRTQDCAATDAARAALLAKARQEH 870

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            NRLLYV MTRA+D+LI+         ++  +  W  M++          +          
Sbjct: 871  NRLLYVAMTRAADRLIVAPFR---GHERETEAAWCRMIHAGLEAALGAGRSLELPYGPAT 927

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTK 765
             W     +                   + +  P  L  P+  +      LNPS       
Sbjct: 928  LWQDGAPAGPA------PAAAAPASGPEAELEPDWLRGPVPPEPAFEA-LNPSGALQAAD 980

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
            G       L+D Q   RG++ H LLQ +  +   +R+    ++    A   P      ++
Sbjct: 981  GARVPPPRLADAQARRRGILTHALLQHLPRVEPARRETAGRAFVRARAPGLPRAAAPAIV 1040

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
             S+ R+++ P +    + D+ +EV++SG++     D ++ GR+D+++++   + + ++KT
Sbjct: 1041 RSVLRIVDAPELAPLFAPDARAEVALSGRVRAGGTDRVVQGRVDRLAVTADAVHLADFKT 1100

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
                P+    +P     Q+++Y ++L   YP +++  LL++ S P +  +  + +  A  
Sbjct: 1101 GR-PPEPGAPLPAAEAGQIALYARLLAQIYPGRTIRPLLVWTSGPVIRTLDPDDVAAALD 1159

Query: 946  EI 947
             I
Sbjct: 1160 RI 1161


>gi|240141289|ref|YP_002965769.1| putative helicase-exonuclease type V protein family [Methylobacterium
            extorquens AM1]
 gi|240011266|gb|ACS42492.1| putative helicase-exonuclease type V protein family [Methylobacterium
            extorquens AM1]
          Length = 1147

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 265/952 (27%), Positives = 437/952 (45%), Gaps = 43/952 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L     L    S E I  ++         D  +     + TG  T  K A  L +A    
Sbjct: 225  LPRALALPDGASVETIEAEILEGSSL--GDWREIAG-RLRTGKATDEKLADGLVEAHAAL 281

Query: 61   CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               +  +   S F T K  P+  K+  T+ + +   D+K+ L   Q   I + D     +
Sbjct: 282  GAGKALAPYRSVFFTDKDEPRAAKSFGTKAVPE---DIKQALLDEQARLIPLFDALRAAR 338

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                TL    LA  ++   E  K +   LDF+DLI  T DLL +   ++W+ YK+D+ ++
Sbjct: 339  ALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIHKTLDLLSR-VGASWVLYKLDRGVD 397

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H+L+DE QDT+  QWE++R+LT +F  G+      RT FAVGD KQSIYSF GA+P+   
Sbjct: 398  HVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTRFAVGDPKQSIYSFQGADPREFE 457

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-IRH 297
              +R   + A  AG  F+ + L LSFR+ + +L  VD VF +P++  GLS D+      H
Sbjct: 458  LTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVDAVFGVPDHFAGLSFDAGAPGTVH 517

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S+R G  G V+LW         + +    +W +  D+    + A ++ARRIA  +    
Sbjct: 518  ASARAGVPGAVELWGIEEPAEAEEPD----AWAAPVDAPEPNAPAIVVARRIARAVKTWT 573

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                   +   R+ +  D+L+LVRKR  +     + R +K    + V G DR  +  H+A
Sbjct: 574  TKG----DACGRIWRPGDVLILVRKR--SAAFEEVIRAMK-GLGVPVAGQDRLEVAGHIA 626

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            + DL+A+GR  L   DDL+    LK+PL   ++DD+ +IC +R   ET+ + + + A  G
Sbjct: 627  VLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFAETLEDALTRHAQAG 686

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                   +  +   I +A    P  F+  +LG   GR + ++R G E  D +D FL    
Sbjct: 687  DGAAIRGLTALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGGEAGDAIDVFLAQAA 746

Query: 538  RNEQNSY-SSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              E       L   +++        +   ++KR   +  NEVR+MTVH AKGLE+PVV +
Sbjct: 747  DAENGGDAPCLDAFLADYIVRPGRGRSGLSVKRDLESGRNEVRVMTVHGAKGLEAPVVVV 806

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            +D    +   ++   +  + S  D P  P+W                 L+   +EE+NRL
Sbjct: 807  IDGCEPL--GRNDPPLLGLDSTADGPLPPVWTGGRTQDCAATLAARSALQARAREEHNRL 864

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV MTRA+D L+I  +   + E  +   +W +MV           +   T+      W 
Sbjct: 865  LYVAMTRAADHLVIAPYRGATRETPA---SWCEMVRIGLERGLGDGEAVETDHGPITIWR 921

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTKGKT 768
                ++           E        + +P  LFS    +      L+PS       G+ 
Sbjct: 922  DGSAASLAAAAADTAPPE-------PETVPDWLFSAAAPEAEAAPPLSPSGALGAADGQR 974

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                 L D +   RG ++H LL+ +  +   +R      +    A      + K+L+ ++
Sbjct: 975  QPRRRLGDAEARRRGALVHSLLEHLPRIEPARRAEAADRFARARAPTLEEAKRKDLVRAV 1034

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             RL+E P +    S  + +EV++SG+I     +  ++GRID++ +    + + ++KT   
Sbjct: 1035 LRLIEAPDLAPLFSDQARAEVALSGRIVVEGIERDVTGRIDRLVVEDGRVILCDFKTGR- 1093

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
             P +   +P    AQ+S+Y ++    +P  ++V LL++ S P V  +    L
Sbjct: 1094 PPADDAPLPEREAAQVSLYARLAAAIWPEHAIVALLVWTSGPVVRRVEGALL 1145


>gi|220921602|ref|YP_002496903.1| double-strand break repair helicase AddA [Methylobacterium nodulans
            ORS 2060]
 gi|219946208|gb|ACL56600.1| double-strand break repair helicase AddA [Methylobacterium nodulans
            ORS 2060]
          Length = 1157

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 260/966 (26%), Positives = 449/966 (46%), Gaps = 49/966 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L++  GL+  E+   I   +        + +    +  + TG  T  K+A+ L  A+  +
Sbjct: 223  LRDALGLAPGETAAAIEARMLEEGPGDWAGL----AARLRTGKATDEKRAEALALAAVAE 278

Query: 61   CIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
               +R  L  + F   +          + T+ + +    +K+ L   Q     +R+R   
Sbjct: 279  GP-QRLPLYLAVFFKDEGEGDPYAAATLGTKAVPEA---VKQALLDEQARLSTLRERLKA 334

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +    T A  TLA  ++   E  K +   LDF+DLI  T DLL + D + W+ YK+D+ 
Sbjct: 335  ARAHARTCALFTLAAEIHRRVELQKARLGALDFDDLIHKTLDLLTRVDSA-WVLYKLDRG 393

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS--PRTLFAVGDEKQSIYSFHGAEP 234
            I+H+LIDE QDT+  QWE++R +TEDF  G    S   PRT FAVGD KQSIYSF GA P
Sbjct: 394  IDHVLIDEAQDTNPEQWEILRRITEDFCAGAGARSGEMPRTRFAVGDPKQSIYSFQGAAP 453

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS-EDSTT 293
            +     ++  +K A  AG  F  + L LSFRS   +L  VD  F++ E+ +GLS  D   
Sbjct: 454  EEFETTRQAWRKAALGAGLTFEDVGLTLSFRSARGVLRGVDATFALAEHFRGLSFGDEAV 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H + RIG  G V+LW            P+ ++W    D++   + A ++ARR+A  +
Sbjct: 514  GTVHETVRIGAPGQVELWPA----ETPSPEPEPDAWVQPVDAVEAGAPALVVARRVARAV 569

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                 T     +   R+ +  +IL+LVRKR  +     + R LK +  + V G DR  + 
Sbjct: 570  RCWTTTG----DEAGRIWRPGEILILVRKR--SAAFEGVIRALKAE-GVPVAGQDRLDIA 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
             H+A+ DL+A GR  L  EDDL+    LK+PL   S+DD+ +I  +R  +E++   + + 
Sbjct: 623  AHIAVMDLVAAGRAALLPEDDLTLATALKTPLVGLSDDDLVRIAARREASESLARALARH 682

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
            A  G    Q     + E   +A+   P  F+  +LG + GR + ++R G E  D +D FL
Sbjct: 683  AEAGDPAAQRGAAALAEWQALARETGPFGFYAELLGPRGGRTRLVARLGGEAGDAIDVFL 742

Query: 534  NFTLRNEQ-NSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
               ++ EQ     SL   ++        +    T+KR   +  +EVR+MTVH AKGLE+ 
Sbjct: 743  TAAVQAEQGTDAPSLTGFLARYAPSGGRDAGGHTVKRDLESVRDEVRVMTVHGAKGLEAG 802

Query: 587  VVFLVDTGS--QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            +V L+D            +       +      +P+W P        ++     L    +
Sbjct: 803  LVVLIDGCEPLGRNDPPLLPMEIGDGTAVHGGTVPVWSPSKGHDCPAIAAARDALHDRAR 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            +E+NRLLYV MTRA D+L+I  +  +  E              ++    R   ++    +
Sbjct: 863  QEHNRLLYVAMTRAKDRLVIAPYRGSDKETPE-----------AWCEMVRRGLVEAFGGV 911

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
             + E       T                    + +P  LF P+  +      L PS +  
Sbjct: 912  ERTEMPYGPAETWREGAAVPMPPAPPVSAPAAEALPDWLFRPVAPEAEPLPPLRPSGLGA 971

Query: 765  KGKTNL-ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
              +    ++  SD     RG++IH LL+ +  +   +R+   T++    A      +   
Sbjct: 972  ADEPRRSDARSSDPAARRRGVLIHALLEHLPAVAPERRETAATAFVAARAPGLAPPDRAA 1031

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
            ++ ++ RLL +P +       + +EV+++G+I     +  + GR+D+++++ + +++ ++
Sbjct: 1032 IVAAVMRLLADPDLAVLFGPAARAEVTLAGRIPLRGAEWPVHGRVDRLAVTDEAVWLCDF 1091

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            KT    P E   +P    AQ+++Y  +L   +P+++++ LL++ + P +  + + +   A
Sbjct: 1092 KTGR-PPSEDAPVPAGMAAQVALYAALLARIHPDRAVIPLLVWTAGPIIRRLSEAECAAA 1150

Query: 944  FAEIST 949
               I  
Sbjct: 1151 LDAIVP 1156


>gi|260752463|ref|YP_003225356.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis NCIMB 11163]
 gi|258551826|gb|ACV74772.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis NCIMB 11163]
          Length = 1162

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 242/956 (25%), Positives = 429/956 (44%), Gaps = 41/956 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +K    L  ++  + +  +     +F  + + +    + +    T  K    +Q      
Sbjct: 218  VKRALDLPFSDINQALE-EACDDDHFDFALLRQIAEANEKWDTATAHKNLAIIQDFVAAS 276

Query: 61   CIEERFSL--LSSFFLTQKFTPQKNI--ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
              +   SL    S  LTQK   +K    IT++I  +  +    L K+  + I ++ R   
Sbjct: 277  PADRLASLGDFQSLILTQKGELKKAPTGITKKIAPEYEEWMIALSKAIHQIISLKKRHE- 335

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                +  +A+L   +  +  +++ KK++ ++DF D+I  +  LL+   +  W+RYK+D+ 
Sbjct: 336  --FSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRT 393

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS--SPRTLFAVGDEKQSIYSFHGAEP 234
             +HIL+DE QDT++ QW +I +L EDFF G++  S  + R++FAVGD KQ+IY F G +P
Sbjct: 394  TDHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVETSRSIFAVGDFKQAIYGFQGTDP 453

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA-QGLSEDSTT 293
            +  +  +     ++  +G++   + L  SFRST  IL +VD++ +  E++  G+      
Sbjct: 454  QAFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H+S+R    G+V LW+ +    +   N  +E  T   D    E+    LA R+A  I
Sbjct: 514  LQPHQSARSDLGGSVVLWQPISDYQEEGENTSEE--TDADDEEQLENGELELAIRLARQI 571

Query: 354  SNMIGTDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +   T        R    +DIL+LVR R     +  L     +  KI V G DR  L
Sbjct: 572  ETWLNPKTPLYLPALGRNAAPRDILILVRNRG---RLASLIVGCLHAQKIPVAGLDRLTL 628

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            T  LA+ DL++  RF+L  +DDL+  C+L SPL  + ++ ++++  +R + E++++ ++K
Sbjct: 629  TAPLAVSDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRK 688

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDE 531
                     +     I   +  A F +P+ F  ++L  K  GR++ + R G E  D ++E
Sbjct: 689  -----SEAEKETWDVIRGWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINE 743

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
             LN  L  E  +  S Q  +   +     IKR  S   N VRIMTVH AKGL++PVV L 
Sbjct: 744  LLNAALLLESETTPSFQRFLDWFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQAPVVILA 803

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNR 649
            D           +K  I   L++                 +   D+I   K    +E+ R
Sbjct: 804  DATRDPHQSNGFRKEIITWPLDEANAPIPMPSNDDIAYLPSDFGDIINEKKAKGLQEHWR 863

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-DE 708
            LLYV  TRA + L+I  H  +  +    + +WY     +        +            
Sbjct: 864  LLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITAMGIAWQEDAMWQQKAVYH 923

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
            W   +  T  P+  P            ++ +P  + + I  +    Y L PS +     +
Sbjct: 924  WEGRKKVTDIPKKQPT---------FPKEAMPSWIKNEIPEEPKPAYPLRPSDLVKDNTS 974

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
            N            RG ++H L + +  LP  +R+     +   +A +  A    +L+   
Sbjct: 975  NPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAALRNSLIKDA 1034

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ--NIFIFEYKTH 886
               + NP+     S  + +E  ++ K+     + +ISG +D++ I +    + I ++KT 
Sbjct: 1035 CDAMSNPVYRDIFSEKALAEAPIAAKV----GEHVISGTVDRLWIDRDKKRVHIVDFKTG 1090

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
              VP   E +   +  QL+ Y   L+  +P+ ++   L+Y + PK+    Q  L+ 
Sbjct: 1091 RRVPATKEQVSEAYQRQLAAYVVALEKIFPDYAIEASLLYTTAPKLVSFEQPFLHD 1146


>gi|218532781|ref|YP_002423597.1| double-strand break repair helicase AddA [Methylobacterium
            chloromethanicum CM4]
 gi|218525084|gb|ACK85669.1| double-strand break repair helicase AddA [Methylobacterium
            chloromethanicum CM4]
          Length = 1147

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 265/952 (27%), Positives = 436/952 (45%), Gaps = 43/952 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L     L    S E I  ++         D  +     + TG  T  K A  L +A    
Sbjct: 225  LPRALALPDGASIETIEAEILKGSSL--GDWREIAG-RLRTGKATDEKLADGLVEAHAAL 281

Query: 61   CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               +  +   S F T K  P+  K+  T+ + +   D+K+ L   Q   I + D     +
Sbjct: 282  GAGKALASYRSVFFTDKDEPRAAKSFGTKAVPE---DIKQALLDEQARLIPLFDALRAAR 338

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                TL    LA  ++   E  K +   LDF+DLI  T DLL +   ++W+ YK+D+ ++
Sbjct: 339  ALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIHKTLDLLSR-VGASWVLYKLDRGVD 397

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H+L+DE QDT+  QWE++R+LT +F  G+      RT FAVGD KQSIYSF GA+P+   
Sbjct: 398  HVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTRFAVGDPKQSIYSFQGADPREFE 457

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-IRH 297
              +R   + A  AG  F+ + L LSFR+ + +L  VD VF +P++  GLS D+      H
Sbjct: 458  LTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVDAVFGVPDHFAGLSFDAGAPGTVH 517

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S+R G  G V+LW         + +    +W +  D+    + A ++ARRIA  +    
Sbjct: 518  ASARAGVPGAVELWGIEEPAEAEEPD----AWAAPVDAPEPNAPAIVVARRIARAVKTWT 573

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                   +   R+ +  D+L+LVRKR  +     + R +K    + V G DR  +  H+A
Sbjct: 574  TKG----DACGRIWRPGDVLILVRKR--SAAFEEVIRAMK-GLGVPVAGQDRLEVAGHIA 626

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            + DL+A+GR  L   DDL+    LK+PL   ++DD+ +IC +R   ET+ + + + A  G
Sbjct: 627  VLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFAETLEDALTRHAQAG 686

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                   +  +   I +A    P  F+  +LG   GR + ++R G E  D +D FL    
Sbjct: 687  DGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGGEAGDAIDVFLAQAA 746

Query: 538  RNEQNSY-SSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              E       L   +++        +   ++KR   +  NEVR+MTVH AKGLE+PVV +
Sbjct: 747  DAENGGDAPCLDAFLADYIVRPGRGRSGLSVKRDLESGRNEVRVMTVHGAKGLEAPVVVV 806

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            +D    +   ++   +  + S  D P  P+W                 L+   +EE+NRL
Sbjct: 807  IDGCEPL--GRNDPPLLGLDSTADGPLPPVWTGGRTQDCAATLAARFALQARAREEHNRL 864

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV MTRA+D L+I  +   + E  +   +W +MV           +   T       W 
Sbjct: 865  LYVAMTRAADHLVIAPYRGATRETPA---SWCEMVRIGLERGLGAGEAVETEHGPITIWR 921

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTKGKT 768
                ++           E        + +P  LFS    +      L+PS       G+ 
Sbjct: 922  DGSTASLAAAAADTAPPE-------PEVVPDWLFSAAAPEAEAAPPLSPSGALGAADGQR 974

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                 L D +   RG ++H LL+ +  +   +R      +    A      + K+L+ ++
Sbjct: 975  QPRRRLGDAEARRRGALVHSLLEHLPRIEPARRAEAADRFARARAPTLEEAKRKDLVRAV 1034

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             RL+E P +    S  + +EV++SG+I     +  ++GRID++ +    + + ++KT   
Sbjct: 1035 LRLIEAPDLAPLFSDQARAEVALSGRIVVEGIERDVTGRIDRLVVEDGRVILCDFKTGR- 1093

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
             P +   +P    AQ+S+Y ++    +P  ++V LL++ S P V  +    L
Sbjct: 1094 PPADDAPLPEREAAQVSLYARLAAAIWPEHAIVALLVWTSGPVVRRVEGALL 1145


>gi|332185666|ref|ZP_08387413.1| double-strand break repair helicase AddA [Sphingomonas sp. S17]
 gi|332014024|gb|EGI56082.1| double-strand break repair helicase AddA [Sphingomonas sp. S17]
          Length = 1148

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 223/957 (23%), Positives = 403/957 (42%), Gaps = 55/957 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT- 59
            L+    L   +  E I + +  +    V+ +      +   G  T  K A  +++   + 
Sbjct: 216  LRRALDLPSGDIDEAIAEGVEDIDEDAVARL---AGANRAWGTATGEKAAAAMERWLGSD 272

Query: 60   -QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                      L     T K  P+K   ++++    PD ++   +  +    +       +
Sbjct: 273  RAGRVALLEALMGTVFTAKGEPRK--ASKKLVDADPDYEDMASEVGEACRYLLSLAARAR 330

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                    L++ +     Y +AK+    +DF+DLI  T DLL++  +  W+RYK+DQ   
Sbjct: 331  HADLLADGLSVGRDYARAYGQAKRAIGAVDFDDLIRMTVDLLQRPGIGEWVRYKLDQVTE 390

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNT-HSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            H+LIDE QDT+L QW ++R+L ++FFVG+     S RTLF VGD KQ+I+ F G +P   
Sbjct: 391  HVLIDEAQDTNLNQWLIVRALADEFFVGRGLYAPSTRTLFTVGDYKQAIFGFQGTDPINF 450

Query: 238  LREKRINQKRA-----------TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
               ++   +RA              G  F+ + L  SFRST  IL  VD      E    
Sbjct: 451  QAAEQHFHRRALQVAGEEDWPTEERGLPFNRLSLTHSFRSTRPILEFVDA---AVEALAE 507

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                    +   +S +   G V LW  VV+      +  +E W         + +   +A
Sbjct: 508  PGMGLAGEVERHASEVKGPGRVTLWPPVVA---GGSDEDEEGWI--------DDAVRKVA 556

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              IA  +   +    +  +   R ++ +DI++LV++R D   +  L         + V G
Sbjct: 557  TDIARAVRRWLDDGLMLESKG-RRLEPQDIMILVKRRGD---LASLIVARLYAEGVPVAG 612

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             DR  L   LA++DL+A  RF+L  EDDLS   +L SPL  +S++ +  +     E  ++
Sbjct: 613  VDRLRLNAPLAVQDLLAAVRFVLQPEDDLSLAALLVSPLIGWSQERL--MEAGYRERGSL 670

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEV 525
            + ++ +            +  + +++  A   +P+ F   +L G   GR++ I R G E 
Sbjct: 671  WAHLTRTLPADD------LAPLRQMLGRADVFTPYQFLEELLSGPLDGRRKLIRRLGTEA 724

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             D ++E LN  L  E  +  SLQ  +   ++    I R  SA  + VR+MT H +KGL++
Sbjct: 725  RDPIEELLNAALTFESTTTPSLQRFLDWFDRGDVEIVRDPSAPLDAVRVMTAHGSKGLQA 784

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            P+V L D  +        + +           IP++ P+++ R   +  +   +      
Sbjct: 785  PLVILADATAD--PTASPRSILRWTPEPGALPIPVFPPRAEERGGPLDAVAAEIAARELA 842

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E+ RL YV  TRA +QL++               +WY     +         +  T   +
Sbjct: 843  EHWRLFYVAATRAEEQLVVAGALGKRAAGVPPMHSWYATCARAMTALG----VAETEPGD 898

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                  Y  +   P             L  E  +P  +  P   +   P  L PS++   
Sbjct: 899  GQSRTFYGMTPQAPFAPHSGASTPSPVLRAEAPLPDWVHRPAPQESRPPRPLAPSSLGED 958

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
               +     +      RG +IH LL+ +  +    R+     +  + A +  A    ++ 
Sbjct: 959  LVADPPPTPAMRAAAERGRLIHCLLERLPPVAPEARRGAAERWLVQAAGVENADLRADVS 1018

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
             ++  +L++P         S +E  ++  +      +++SGR+D++ I    I + +YKT
Sbjct: 1019 QAVFGILDDPAYAALFGPGSLAEAPIAATLAS---GLVVSGRVDRLLIEADEIRLIDYKT 1075

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
                P  ++ +P  H+AQ++ Y   L+  +P + +   L+Y + P++  +P   L  
Sbjct: 1076 GRRAPGGLDDVPVFHLAQMAGYAAALEVIFPGRRVSVALLYTAGPRLIPVPDRVLAA 1132


>gi|163853836|ref|YP_001641879.1| double-strand break repair helicase AddA [Methylobacterium extorquens
            PA1]
 gi|163665441|gb|ABY32808.1| double-strand break repair helicase AddA [Methylobacterium extorquens
            PA1]
          Length = 1147

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 263/952 (27%), Positives = 437/952 (45%), Gaps = 43/952 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L     L    S E I  ++         D  +     + TG  T  K A  L +A    
Sbjct: 225  LPRALALPDGASIETIEAEILKGSSL--GDWREIAG-RLRTGKATDEKLADGLVEAHAAL 281

Query: 61   CIEERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               +  +   S F T K  P+  K+  T+ + +   D+K+ L   Q   I + D     +
Sbjct: 282  GAGKALAPYRSVFFTDKDEPRAAKSFGTKAVPE---DVKQALLDEQARLIPLFDALRAAR 338

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                TL    LA  ++   E  K +   LDF+DLI  T DLL +   ++W+ YK+D+ ++
Sbjct: 339  ALARTLGLFRLAAEIHRRVEAQKTRLGALDFDDLIHKTLDLLSR-VGASWVLYKLDRGVD 397

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H+L+DE QDT+  QWE++R+LT +F  G+      RT FAVGD KQSIYSF GA+P+   
Sbjct: 398  HVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGLTRTRFAVGDPKQSIYSFQGADPREFE 457

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-IRH 297
              +R   + A  AG  F+ + L LSFR+ + +L  VD VF +P++  GLS D+      H
Sbjct: 458  LTRRAWGRAAEGAGHDFADVSLRLSFRTASHVLAAVDAVFGVPDHFAGLSFDAGAPGTVH 517

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S+R G  G V+LW         + +    +W +  D+    + A ++ARRIA  +    
Sbjct: 518  ASARAGVPGAVELWGIEEPAEAEEPD----AWAAPVDAPEPNAPAIVVARRIARAVKTWT 573

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                   +   R+ +  D+L+LVRKR  +     + R +K    + V G DR  +  H+A
Sbjct: 574  TKG----DACGRIWRPGDVLILVRKR--SAAFEEVIRAMK-GLGVPVAGQDRLEVAGHIA 626

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            + DL+A+GR  L   DDL+    LK+PL   ++DD+ +IC +R   ET+ + + + A  G
Sbjct: 627  VLDLVAVGRAGLLPADDLTLATALKTPLVGLTDDDLTRICARRPFAETLEDALTRHAQAG 686

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                   +  +   I +A    P  F+  +LG   GR + ++R G E  D +D FL    
Sbjct: 687  DGAAIRGLAALRLWIQLAAENGPFGFYAALLGPHGGRSRLVARLGGEAGDAIDVFLAQAA 746

Query: 538  RNEQNSY-SSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              E       L   +++        +   ++KR   +  NEVR+MTVH AKGLE+PVV +
Sbjct: 747  DAENGGDAPCLDAFLADYIVRPGRGRSGLSVKRDLESGRNEVRVMTVHGAKGLEAPVVVV 806

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            +D    +   ++   +  + S  + P  P+W                 L+   +EE+NRL
Sbjct: 807  IDGCEPL--GRNDPPLLGLDSTAEGPLPPVWTGGRTQDCAATLAARSALQARAREEHNRL 864

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV MTRA+D L+I  +   + E  +   +W +MV           +   T       W 
Sbjct: 865  LYVAMTRAADHLVIAPYRGATRETPA---SWCEMVRIGLERGLGDGEAVETEHGPITIWR 921

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTKGKT 768
                ++           E        + +P  LFS    +      L+PS       G+ 
Sbjct: 922  DGSAASLAAAAADTAPPE-------PETVPDWLFSAAAPEAEAAPPLSPSGALGAADGQR 974

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                 L D +   RG ++H LL+ +  +   +R      +    A      + K+L+ ++
Sbjct: 975  QPRRRLGDAEARRRGALVHSLLEHLPRIEPARRAEAAERFARARAPTLEEAKRKDLVRAV 1034

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             RL+E P +    S  + +EV++SG+I     +  ++GRID++ +    + + ++KT   
Sbjct: 1035 LRLIEAPDLAPLFSDQARAEVALSGRIVVEGIERDVTGRIDRLVVEDGRVILCDFKTGR- 1093

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
             P +   +P    AQ+++Y ++    +P  ++V LL++ S P V  +   +L
Sbjct: 1094 PPADDAPLPEREAAQVNLYARLAAAIWPEHAIVALLVWTSGPVVRRVEGARL 1145


>gi|221236588|ref|YP_002519025.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000]
 gi|220965761|gb|ACL97117.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000]
          Length = 1153

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 250/965 (25%), Positives = 422/965 (43%), Gaps = 50/965 (5%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
             R G     S E +      +    +       S+  + G     K A+ L   ++    
Sbjct: 220  RRCGFDGPTSAEDLATRA--MARLDLPAWRAVASVLFDGGGKQDAKSAEALAAVAR--DP 275

Query: 63   EERFSLLSSFFLT--QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
            +    L      T   + TP          K   DL+E L   Q +    R++    ++ 
Sbjct: 276  DATLDLALRALFTEGGEGTPATWPAKTSGLKSREDLREALLLEQAKLEAAREQVRAARVA 335

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + T  +L LA      +   K+    LDF DLI  T  LL ++  +AW+ YK+D  I+HI
Sbjct: 336  EDTQNALLLAGLYIERHMAEKEARGALDFTDLIDKTRLLLTEKVEAAWVLYKLDGGIDHI 395

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFF-----VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            L+DE QDT+  QWE++R+LT DFF      G +   + RTLF VGDEKQSIYSF GA+P 
Sbjct: 396  LLDEAQDTAPEQWEILRALTADFFVGETSEGWSGRRAERTLFVVGDEKQSIYSFQGADPT 455

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTT 294
            R+L E +    R    G     + L +S+RST ++L+ VD +FS P+  +G+        
Sbjct: 456  RLLEETQGYISRIEAVGAVGKGVPLTVSYRSTHEVLSFVDALFSDPDTREGVPPPVGQDL 515

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            +RH   R G  G V LW              +E+W    D   + S+   LA  IA    
Sbjct: 516  VRHELFRHGHPGCVDLWPLTREL----PGEDREAWEKPLDEEGERSANRRLAEAIAAETR 571

Query: 355  NMIGTD---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             ++           G+ R   A DILVLVR+RK   L   + R LK    + V G DR  
Sbjct: 572  AILDRGDAVFDKDLGRHRAAHAGDILVLVRRRK--ALFEEIIRALK-RRGVPVAGADRLA 628

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            L+ H+A +DL+ALGRFIL  +DDL+   +LK+P     +DD++ +   +    T++  + 
Sbjct: 629  LSSHIAFEDLVALGRFILFPDDDLTLAALLKTPFCGLGDDDVYAL--AKGRRGTLWVELT 686

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVI 526
            + +     ++      +   +   +   P +F+   LG         R + ++R G E  
Sbjct: 687  RRSEE-RPEWAAARAVLDWALAEGRRRQPFEFYAGWLGLTDADGRSHRAKVLTRLGAEAE 745

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            + LDEFL   +  EQ     L+ L+++       +KR       EVR+MT H +KGLE+P
Sbjct: 746  EALDEFLAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVMTAHGSKGLEAP 805

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL +T  +  +          P L  + G  +W    K+   + +   K  +    +E
Sbjct: 806  IVFLPETTVKRGAGGS-------PLLVTEDGALLWCASGKNDCAVSAKARKLREDKESQE 858

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYV +TRA ++LI+C   +   +       WY     +F + +    ++       
Sbjct: 859  ALRLLYVALTRARERLILCGRIDARTKDDKVGG-WYAAARAAFAHPDIAPGVRTIGDGET 917

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                    +       PL               P  + +    +        PS ++   
Sbjct: 918  --------AFLRYGPDPLGAPRVAPATAAVAAPPAWIMAQATPEPAAARYAAPSRLEDTA 969

Query: 767  KTNLESLLSDNQTF---NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +    S L+         RG +IHKLLQ++  LP  +R +          +     +   
Sbjct: 970  RVPAPSPLARIAGLGRYRRGELIHKLLQLLPDLPPAQRPDAARRILAAE-RDLTDTQRTE 1028

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
            +  +   +LE+         +S +EV+++G      + + +SGR+D++ +    + + +Y
Sbjct: 1029 MASAAFEVLEDARFAAVFGPNSRAEVALAGTSAHLPQGLAVSGRVDRLVVDDARVLVVDY 1088

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            KT+   P  IE     ++AQ+++Y  +L++ +P +++   L++   PK+  +P+  +  A
Sbjct: 1089 KTNRPSPDRIEDADTAYLAQMAVYVAVLREVFPGRTVEAALVWTDGPKLMPVPEKVMALA 1148

Query: 944  FAEIS 948
             A ++
Sbjct: 1149 LARLA 1153


>gi|326387825|ref|ZP_08209431.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207871|gb|EGD58682.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 1159

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 219/958 (22%), Positives = 389/958 (40%), Gaps = 53/958 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +    GL  +    ++         F V  +++ +         T       +       
Sbjct: 227  INRLLGLPADADRSMLAAHFTDRA-FPVVSLSRCLDALRGWATKTADGMIAPIATWLAAS 285

Query: 61   CIEER--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
              E    F  L     T++ TP+     + + K+ PD     +   +    +RD    + 
Sbjct: 286  PEERAVSFDALERALFTKESTPK---YAKNLEKQDPDYVSHAEDVGEALEAVRDLVRAFA 342

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +      +LT+       ++EAK +   +DF+D I     LL +R  + WIR+K+D+  +
Sbjct: 343  LADLLDPALTVGCRFARAWQEAKDREGFIDFDDQIRAAAALLTERAPADWIRFKLDRRFD 402

Query: 179  HILIDEVQDTSLIQWEV-IRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEPKR 236
            H+L+DE QDT+  QW + +  LT DFF G        RTLF VGD KQ+I+ F G  P+ 
Sbjct: 403  HVLVDEAQDTNAAQWRIVLDGLTGDFFTGAGKETDGARTLFVVGDYKQAIFRFQGTSPEN 462

Query: 237  VLREKRINQKR-------ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLS 288
              R +R  +         A +   +   + L  SFRS+  IL+ VD+  +       GL+
Sbjct: 463  FDRARRRVENELLSLARMADDPTLELLDLGLGRSFRSSQTILSFVDRAIAGIGPARLGLA 522

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                             G V LW+ V     ++   + ++          +     LA R
Sbjct: 523  AAPELHEGQI-----LPGLVTLWQPVGLGETAELGAEDDTGGDEGWLAGTDRE---LAAR 574

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            IA  +   +      S G+ R     D+++LVRKR D      L     +   + V G D
Sbjct: 575  IARQVRQWLDEGFSLSKGRHRRATPGDVMILVRKRGDLAG---LIVARLHAEGVPVAGVD 631

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            R  L   LA+KD++A   F +   DDL+   +L SPL  +S+ D+      R +   +++
Sbjct: 632  RLRLGAPLAVKDMIAALTFCVQPGDDLNLAGLLVSPLIGWSQQDLLAHGY-RGKGVPLWD 690

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVID 527
            +++   N         +  + EL+  A F  P    T IL G  +GR+  ++R G E  D
Sbjct: 691  HLRATENAQTH---GALTRLRELLSRADFAPPAALLTWILVGPWQGRKALVARLGAEAND 747

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
             +DE LN  +        SL   +         +KR    N + VR+MTVH +KGL++P+
Sbjct: 748  PIDELLNAAMAYATAHVPSLAGFLHWFAAGDGDVKREAGGNADLVRVMTVHGSKGLQAPI 807

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V L D        +    +      + +  +P+   +   +   V    +  ++  +EE+
Sbjct: 808  VILADAADDPGKSRPAPVVL---MDDGERAVPLPPLRKDEKPLPVRSAEEIARREEREEH 864

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             RLLYV MTRA + L +       ++ +  + +WY  +      D  ++           
Sbjct: 865  WRLLYVAMTRAEEALFVTGSLGPRDKGEVPEESWYAELARLLPTDGGLED---------- 914

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
                +          PL  ++          +P +L   I  +      L PS +     
Sbjct: 915  --PIWTRRWEEGALAPLPPKDPATGPAPSVVLPDELVRAIAPEPRPLRPLAPSALGEDEA 972

Query: 768  TNLESLLSDNQ--TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                +           RG ++H+LL+ +  L    R     ++  + A   P  E   L+
Sbjct: 973  PAPPTRPGPGARNAARRGTLLHRLLERLPDLAPEARAASAMAWVRRMATDLPENEQAGLV 1032

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
             +   +L NP         S +EV ++  +       +I+G ID++ I+ Q + I ++KT
Sbjct: 1033 DAALAVLTNPEWQDVFGPGSLAEVPIAALV----GPRLINGTIDRLLITAQAVRIVDFKT 1088

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
                P++++ IP  ++ Q++ Y   ++  +P K +   L+Y + P++F +P   L   
Sbjct: 1089 DRRPPEDLDAIPTAYLRQMAAYVAAMRVIHPGKRVEAALLYTATPRLFALPDELLAAQ 1146


>gi|56551994|ref|YP_162833.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis ZM4]
 gi|56543568|gb|AAV89722.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis ZM4]
          Length = 1162

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/956 (25%), Positives = 430/956 (44%), Gaps = 41/956 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +K    L  ++  + +  +     +F  + + +    + +    T  K    +Q      
Sbjct: 218  VKRALDLPFSDINQALE-EACDDDHFDFALLRQIAEANEKWDTATAHKNLAIIQDFVAAS 276

Query: 61   CIEERFSL--LSSFFLTQKFTPQKNI--ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
              +   SL    S  LTQK   +K    IT++I  +  +    L K+  + I ++ R   
Sbjct: 277  PADRLASLGDFQSLVLTQKGELKKAPTGITKKIAPEYEEWMIALSKAIHQIISLKKRHE- 335

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                +  +A+L   +  +  +++ KK++ ++DF D+I  +  LL+   +  W+RYK+D+ 
Sbjct: 336  --FSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRT 393

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS--SPRTLFAVGDEKQSIYSFHGAEP 234
             +HIL+DE QDT++ QW +I +L EDFF G++  S  + R++FAVGD KQ+IY F G +P
Sbjct: 394  TDHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVEASRSIFAVGDFKQAIYGFQGTDP 453

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA-QGLSEDSTT 293
            +  +  +     ++  +G++   + L  SFRST  IL +VD++ +  E++  G+      
Sbjct: 454  QAFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H+S+R    G+V LW+ +    +   N  +E  T   D    E+    LA R+A  I
Sbjct: 514  LQPHQSARSDLGGSVVLWQPISDYQEEGENTSEE--TDADDEEQLENGELELAIRLARQI 571

Query: 354  SNMIGTDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +   T        R    +DIL+LVR R     +  L     +  KI V G DR  L
Sbjct: 572  ETWLNPKTPLYLPALGRNAAPRDILILVRNRG---RLASLIVGCLHAQKIPVAGLDRLTL 628

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            T  LA+ DL++  RF+L  +DDL+  C+L SPL  + ++ ++++  +R + E++++ ++K
Sbjct: 629  TAPLAVSDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRK 688

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDE 531
                     +     I E +  A F +P+ F  ++L  K  GR++ + R G E  D ++E
Sbjct: 689  -----SEAEKETWDIIREWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINE 743

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
             LN  L  E  +  S Q  +   +     IKR  S   N VRIMTVH AKGL++PVV L 
Sbjct: 744  LLNAALLLESETTPSFQRFLDWFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQAPVVILA 803

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNR 649
            D           +K  I   L++                 +   D+I   K    +E+ R
Sbjct: 804  DATRDPHQSNGFRKEIITWPLDEANAPIPMPSNDDIAYLPSDFGDIINEKKAKDLQEHWR 863

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-DE 708
            LLYV  TRA + L+I  H  +  +    + +WY     +        +            
Sbjct: 864  LLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITAMGIAWQEDAMWQQKAVYH 923

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
            W   +  T  P+  P            ++ +P  + + I  +    Y L PS +     +
Sbjct: 924  WEGRKKVTDIPKKQPT---------FPKEAMPSWIKNEIPEEPKPAYPLRPSDLVKDNTS 974

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
            N            RG ++H L + +  LP  +R+     +   +A +  A    +L+   
Sbjct: 975  NPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAALRNSLIKDA 1034

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ--NIFIFEYKTH 886
               + NP+     S  + +E  ++ K+     + +ISG +D++ I +    + I ++KT 
Sbjct: 1035 CDAMSNPVYRDIFSEKALAEAPIAAKV----GEHVISGTVDRLWIDRNKKRVHIVDFKTG 1090

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
              VP   E +   +  QL+ Y   L+  +P+ ++   L+Y + PK+    Q  L+ 
Sbjct: 1091 RRVPATKEQVSEAYQRQLAAYVVALEKIFPDYAIEASLLYTTAPKLVSFEQPFLHD 1146


>gi|241761923|ref|ZP_04760008.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
 gi|241373603|gb|EER63175.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
          Length = 1162

 Score =  509 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 244/962 (25%), Positives = 435/962 (45%), Gaps = 41/962 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +K    L  ++  + +  +     +F  + + +    + +    T  K    +Q      
Sbjct: 218  VKRALDLPFSDINQALE-EACDDDHFDFALLRQIAEANEKWDTATAHKNLAIIQDFVAAS 276

Query: 61   CIEERFSL--LSSFFLTQKFTPQKNI--ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
              +   SL    S  LTQK   +K    IT++I  +  +    L K+  + I ++ R   
Sbjct: 277  PADRLASLGDFQSLVLTQKGELKKAPTGITKKIAPEYEEWMIALSKAIHQIISLKKRHE- 335

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                +  +A+L   +  +  +++ KK++ ++DF D+I  +  LL+   +  W+RYK+D+ 
Sbjct: 336  --FSQFAIAALRTGQAYSQAWQQTKKESGLVDFNDMIETSVALLRTPGIGEWVRYKLDRT 393

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS--SPRTLFAVGDEKQSIYSFHGAEP 234
             +HIL+DE QDT++ QW +I +L EDFF G++  S  + R++FAVGD KQ+IY F G +P
Sbjct: 394  TDHILVDEAQDTNIFQWAIISALAEDFFSGESAKSVEASRSIFAVGDFKQAIYGFQGTDP 453

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA-QGLSEDSTT 293
            +  +  +     ++  +G++   + L  SFRST  IL +VD++ +  E++  G+      
Sbjct: 454  QAFVDARDYFNDKSQGSGREILDLSLNRSFRSTPPILAIVDQMLADIESSCGGIGISQQA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H+S+R    G+V LW+ +    +   N  +E  T   D    E+    LA R+A  I
Sbjct: 514  LQPHQSARSDLGGSVVLWQPISDYQEEGENTSEE--TDADDEEQLENGELELAIRLARQI 571

Query: 354  SNMIGTDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +   T        R    +DIL+LVR R     +  L     +  KI V G DR  L
Sbjct: 572  ETWLNPKTPLYLPALGRNAAPRDILILVRNRG---RLASLIVGCLHAQKIPVAGLDRLTL 628

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            T  LA+ DL++  RF+L  +DDL+  C+L SPL  + ++ ++++  +R + E++++ ++K
Sbjct: 629  TAPLAVSDLLSAIRFVLQPDDDLTLACLLVSPLIGWDQERLYRLAAKRAKKESLFDRLRK 688

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDE 531
                     +     I E +  A F +P+ F  ++L  K  GR++ + R G E  D ++E
Sbjct: 689  -----SEAEKETWDIIREWLSKADFITPYRFLEMLLSGKGEGRRKLLERLGEEARDPINE 743

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
             LN  L  E  +  S Q  +   +     IKR  S   N VRIMTVH AKGL++PVV L 
Sbjct: 744  LLNAALLLESETTPSFQRFLDWFDSGDVEIKRDPSVRQNTVRIMTVHGAKGLQAPVVILA 803

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNR 649
            D           +K  I   L++                 +   D+I   K    +E+ R
Sbjct: 804  DATRDPHQSNGFRKEIITWPLDEANAPIPMPSNDDIAYLPSDFGDIINEKKAKDLQEHWR 863

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-DE 708
            LLYV  TRA + L+I  H  +  +    + +WY     +        +            
Sbjct: 864  LLYVAATRAEEYLVITGHLGSRAKNIPPKDSWYACATRAITAIGIAWQEDAMWQQKAVYH 923

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
            W   +  T  P+  P+           ++ +P  + + I  +    Y L PS +     +
Sbjct: 924  WEGRKKVTDIPKKQPI---------FPKEAMPSWINNEIPEEPKPAYPLRPSDLVKDNTS 974

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
            N            RG ++H L + +  LP  +R+     +   +A +  A    +L+   
Sbjct: 975  NPPPDGGSITAAKRGTLLHALFERLPMLPVEEREKAGLRWLETSAGVKDAALRNSLIKDA 1034

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ--NIFIFEYKTH 886
               + NP+     S  + +E  ++ K+     + +ISG +D++ I +    + I ++KT 
Sbjct: 1035 CDAMSNPVYRDIFSEKALAEAPIAAKV----GEHVISGTVDRLWIDRNKKRVHIVDFKTG 1090

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              VP   E +   +  QL+ Y   L+  +P+ ++   L+Y + PK+    Q  L+  F++
Sbjct: 1091 RRVPATKEQVSEAYQRQLAAYVVALEKIFPDYAIEASLLYTTAPKLVSFEQPFLHDYFSQ 1150

Query: 947  IS 948
            + 
Sbjct: 1151 MD 1152


>gi|114799862|ref|YP_760584.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC
            15444]
 gi|114740036|gb|ABI78161.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC
            15444]
          Length = 1168

 Score =  508 bits (1308), Expect = e-141,   Method: Composition-based stats.
 Identities = 239/965 (24%), Positives = 430/965 (44%), Gaps = 59/965 (6%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+   G +  ES   I      +      D+ +   L++  G  T   +A+ L++    +
Sbjct: 235  LRADLG-APVESPAEILAAA--MGDRLPRDVIREAMLALLKGTATDQGRAEVLEKVLNAE 291

Query: 61   CIEERFSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLK------KSQDEFIKIRDR 113
              E  ++  + FFLT K   +K N  T+   +  P L E  +      +      ++ + 
Sbjct: 292  TPEAIWAAYAPFFLTDKGEFRKQNPYTKTPGQLCPLLPEYFQIKDGEGRETARVRELVEV 351

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                K F  T A + +       Y + K +   LDF+DLI  T  LL+   +++W+ YK+
Sbjct: 352  LQRAKAFARTAALIRIGLPALEAYRDEKARRGALDFDDLIQKTRALLEADGMASWVLYKL 411

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH--SSPRTLFAVGDEKQSIYSFHG 231
            D  I+H+L+DE QDTS  QW++IR+LT +F  G+       PRT+F VGDEKQSIYSF G
Sbjct: 412  DGSISHVLLDEAQDTSPDQWDLIRALTHEFGSGEGRDYSQDPRTMFIVGDEKQSIYSFQG 471

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE----NAQGL 287
            AEP+R+L E R  ++R        + +E+ +SFRS  ++LT VD V++          G+
Sbjct: 472  AEPERLLTETRRLEERMAG----AAGVEMLMSFRSVPEVLTYVDTVWNNSPPIDVGIGGM 527

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
               +     H + R  + G V++W       D + +    +W    D +   S  + LA 
Sbjct: 528  PPRTADNTLHTARRWNEHGAVEIWPIDPKIADDETD----AWARPVDVVRATSPKAKLAT 583

Query: 348  RIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  +  MI       +GK +R  + +D+L+LV KR    L   L   LK +  + V G
Sbjct: 584  SVARAVRRMIDRGETVWDGKAQRATRPEDVLILVSKR-QGGLFDSLINALKAE-GLPVAG 641

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD--IFKICTQRHETE 464
             DR ILTD + ++D + L RF      DL+   +L+ P     +DD  +F + ++R + E
Sbjct: 642  ADRLILTDFIGVQDCLNLMRFATLDLRDLTLAEILRGPFCGLVDDDQYLFSLASRRAKGE 701

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFIS 519
            T++  ++   +  + +    ++ + +         P++F + +L         G +Q  +
Sbjct: 702  TLWSRVKASDDPDVQQAARFLQGLFD----RAHLPPYEFLSHVLDRVGEGGQTGWEQLNA 757

Query: 520  RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            R G    D ++  L+  L ++    SSLQ  ++ +E     IKR  +    EVR+MTVH 
Sbjct: 758  RLGMPARDPIEALLSRALSHDSAGPSSLQSFVASMEAENVEIKRDLAEAGREVRVMTVHG 817

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            AKGL++P+V L DT  +  +          PS+ +     +W P+  +            
Sbjct: 818  AKGLQAPIVILPDTTFKPKAS--------APSVLESANAVVWSPRKDTDAEASKRARAIA 869

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +   +EE+ RLLYV +TRA D+LII  H      +                  + +   +
Sbjct: 870  EAKAREEHRRLLYVALTRAQDRLIIAGHWQGQAGEDKTGYEKDSWYALCDAAMDLLPFEE 929

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                    +      +            E   +      + +KL +P             
Sbjct: 930  TDQGRRYGKVTTVAEADTDSSLGVGGLPEWALRPAPIDPVARKLSAPT------------ 977

Query: 760  STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
            S +  K +       +  +   RG  IH LLQ +  LPE  R+    +Y +++A      
Sbjct: 978  SLLGPKTRIVAPFDAAREERLKRGRAIHALLQYLPELPEDGREAAADAYLSRDAD-LTDG 1036

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
            +   +  +   ++ +P +         +E ++ GK     +  +I+GR+D++ ++ + ++
Sbjct: 1037 QRAEMKAAALGVMRDPALGAIFQPGGRAEAAIIGKSKDLPEGTVINGRVDRLVVTPERVW 1096

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            + ++KT    P   E +  T++AQ++ Y  +LK ++P + +V  L +   P++  +P+ +
Sbjct: 1097 VIDFKTDQPAPDRPEDVADTYVAQMAAYWAVLKTAFPEREVVAALCWTDGPRLMRLPEAQ 1156

Query: 940  LNKAF 944
            L    
Sbjct: 1157 LLAVL 1161


>gi|103485653|ref|YP_615214.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
 gi|98975730|gb|ABF51881.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
          Length = 1166

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 214/955 (22%), Positives = 372/955 (38%), Gaps = 51/955 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+  FGL      +    D         +DI    +     G  T L  +  +       
Sbjct: 226  LRAAFGL-PGGDPDAWMIDQLAGGAIAEADIKAVAASGAAWGTKTGLACSDVMVGWMTGD 284

Query: 61   CIEER--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                      L   FLT K   + +    +      D  +   +  +    +R      +
Sbjct: 285  TAARAAMLDELLGCFLTGKGDLRADFAGDKGR--MTDCVDSAVRIVEAASALRGTATAMR 342

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +     A+  L       Y  AK++  + DF+DLI     LL+      W+R+K+DQ  +
Sbjct: 343  IADELAAAWKLGSRFAEAYALAKREQGLADFDDLITLAGSLLRVSGFGEWVRFKLDQRTD 402

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL+DE QDT++ QW ++ SL E+FF          RTLF VGD KQ+I+ F G EP+  
Sbjct: 403  HILVDEAQDTNMRQWGIVLSLAEEFFAVHGKDMDRARTLFTVGDRKQAIFGFQGTEPRAF 462

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            +  + +       AGQ F  ++L  ++RST  IL V D   +    A  L         H
Sbjct: 463  VAARDLFHALGERAGQDFEAVDLISNYRSTPAILEVADAWLAAGGTA--LMGLDGAEPPH 520

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTIS 354
               R    G V+LWE +          + +          +  ++ ++  LA+ IA  + 
Sbjct: 521  VPHRRAHAGQVELWEPLPVGKALGATEEADEGVDDNGNATAPARDPASMRLAKAIAAEVQ 580

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            + I           R +   D+++LVR+R     +            + V G DRF LT 
Sbjct: 581  DWIANG-----KDGRPVAPGDVMILVRRR---RDLAARIVARLQALHVPVAGVDRFALTQ 632

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             LA++DLMA  RF +   DDL+   +L SPL  +++DD++     R  T           
Sbjct: 633  PLAVQDLMAAMRFAVQPHDDLNLAALLVSPLIGWTQDDLYDRTRGRGRTPIWMYLRAHQD 692

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFL 533
                      +  + +++ +A + +P  F   +L G   GR++  +R G E  D +DE L
Sbjct: 693  MMP----PATMATLRQILGMADYTTPFRFLETLLSGPIDGRRKLYARLGREARDPIDELL 748

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            N  L  E     SL   ++E+E     IKR   A    VR+MTVH +KGL++P+V L D 
Sbjct: 749  NQALAFEARKTVSLLGFLAEIEGSAADIKRQTEARGGVVRVMTVHGSKGLQAPIVILADA 808

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                              +     +P++   +  R+  ++D     K +  EE+ RL YV
Sbjct: 809  TDDA----AFGHRPFTVDVAAWEKLPVYAIGADERHGALADAYAKAKAAADEEHWRLFYV 864

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTW------YDMVYDSFHNDERVKKIKLTNSINKD 707
             MTRA + L++   + T+                 D +   + +       +  + +N  
Sbjct: 865  AMTRAEEILVVAGVTRTAERTVPEASWHAAVSGVLDRLGHDWEDGGAAWGRRRVHRVNAG 924

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
             W             P               +P  L      +   P  L PST+     
Sbjct: 925  RWAPQAKKAKTAARAPTR-------------LPDWLHRTAPEETRPPRPLAPSTLGEDDV 971

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                          RGL++H L + +  +   +R+     +    A          ++  
Sbjct: 972  AAPPQGGERGAAVERGLLLHALFERLPPVAPDRRRAAALRWLAVQAPALDEPARGAMVDE 1031

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
            +  +L++P         S +EV +S  ++      I+    D++ ++   + + ++KT  
Sbjct: 1032 VLAVLDDPAHAPLFGPGSLAEVPLSAVVDGVVVAGIV----DRLRVTDDAVTVIDFKTGR 1087

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            H+P     +   ++ Q++ Y   LK  +P + +   L+Y + P++  +    L+ 
Sbjct: 1088 HLPGSAAEVQPAYLRQMAAYRDALKVIFPGRRIATALLYTAAPRLIALGDALLDA 1142


>gi|87200013|ref|YP_497270.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135694|gb|ABD26436.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444]
          Length = 1161

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 221/962 (22%), Positives = 395/962 (41%), Gaps = 52/962 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +    GL  +     +   L     F    + + + ++   G    ++ A  L       
Sbjct: 220  INRALGLGEDAGVAAL-AALCAEDAFDCQSVRRCMEMNAAWGTKGGIENANALGDWLSAT 278

Query: 61   CIEER--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                    +LL + FLT K  P+    T  I KK PD      +       +R       
Sbjct: 279  PSRRLETIALLEACFLTAKGEPRS---TTNIEKKQPDYPGYASRVIACIEALRAERAKID 335

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +      +L + +     ++ AK +   +DF+D I    +LL +R  + WIR+K+D+  +
Sbjct: 336  LADLLETALGVGRRFALAWDAAKTREGFIDFDDQIRTAAELLTRRTTAEWIRFKLDRRFD 395

Query: 179  HILIDEVQDTSLIQWEV-IRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKR 236
            HIL+DE QDT+  QW++ +  L  DFF G+       RTLF VGD KQ+I+ F G  P+ 
Sbjct: 396  HILVDEAQDTNASQWQIVLEGLVSDFFTGEGQRGPAVRTLFVVGDYKQAIFGFQGTSPEN 455

Query: 237  VLREKRINQKRAT-------NAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLS 288
              R     +++         +  ++   + L  SFR+ A IL  VD        +  GLS
Sbjct: 456  FARASIRVKEQLAEVSAILRDPERELLELGLGQSFRTAAPILGFVDAAIGRIGWDRFGLS 515

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
            +                GTV LW  V    D+    +    T   +          LA R
Sbjct: 516  QMPEQHKGLP-----IPGTVGLWRVV--GDDAGEPGEDGEDTDEGEEGWLSRPDRELADR 568

Query: 349  IAYTISNMIGTDTIFSNG-KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            IA  +   I        G   R+  A D+++LVRKRK+      L     +   + V G 
Sbjct: 569  IARQVRAWIDVGFPLGKGDTPRLANAGDVMILVRKRKELAG---LIVARLHARGVPVAGV 625

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            DR  L   LA+KDL+A  RF     DDL+   +L SPL  +S++D+ +    R   E ++
Sbjct: 626  DRLRLGAPLAVKDLVAALRFAAQPLDDLNLAGLLVSPLIGWSQEDLLERGY-RPHGERLW 684

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVI 526
            E++++           +++ +  L+  A F  P      +L G   GR++ ++R G E  
Sbjct: 685  EWLRRNEGPETF---EMMERLRALLARADFDPPQVLLHWLLVGPWDGRRKLVARLGGEAN 741

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D +DE LN  +     +  SL   +   +     +KR    +   VR+MTVH +KGL++P
Sbjct: 742  DPIDELLNAAMAYASANVPSLVGFLQWFDAGEGELKREAGKSDGLVRVMTVHGSKGLQAP 801

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L D               +   +     +P+   + + +   V +     K++ +EE
Sbjct: 802  IVILADAADDPDLSPPRGLEIVEDVMGARRKVPLPPLRKEEKAPAVIEAEAEAKRAEREE 861

Query: 647  YNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            + RLLYV MTRA + L I         ++  +    +WY  +   F + E          
Sbjct: 862  HWRLLYVAMTRAEEALFIAGAKGKVRRTSGGELPVDSWYAQLEPLFGDGEWEVDPLWGGR 921

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI- 762
                    +       + +P+              +P+ L +P+  +   P  L PS++ 
Sbjct: 922  KTIGRPQDFVGRPAQADVSPVRA-----------ALPQVLLTPVGAEPRPPRPLAPSSLG 970

Query: 763  -DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
             D   +              RG ++H+L++ +  +    R+    ++  +    +   E 
Sbjct: 971  EDEASEPPTHPGPGAMIAARRGTLLHRLIERLPEVSPASREASGMAWLARAGSDFDEAER 1030

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
              ++ S   +L +P  +     DS +EV ++  +       ++SG +D++ I ++ + I 
Sbjct: 1031 SAMVRSALAVLNHPEWSDVFGPDSLAEVPLAAVVA----GRVVSGTVDRLVIGRERVRIV 1086

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
            ++KT    P     +P  ++ Q++ Y   L+  +P   +   L+Y   P++F++PQ  + 
Sbjct: 1087 DFKTARRPPASFTEVPAAYVRQMAAYVAALEAIHPGVPVEAALLYTHTPQLFVVPQEVIA 1146

Query: 942  KA 943
              
Sbjct: 1147 AQ 1148


>gi|197103666|ref|YP_002129043.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1]
 gi|196477086|gb|ACG76614.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1]
          Length = 1147

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 259/962 (26%), Positives = 413/962 (42%), Gaps = 51/962 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            + +  GL   +  E + +    +     +               T +K A  L+  ++T 
Sbjct: 224  VWDACGLEPGQDAEALERAA--VAALDRNLWRAAAEALAAG-TATDVKCAGQLRAVAETP 280

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             +    + L  F    + TP   +      K    L+  L   QD     R+R    ++ 
Sbjct: 281  TLSGALAAL--FTEKGEGTPATWVGKTSGLKAHEGLRMALLTEQDRLAAARERLRGARVA 338

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              TL +LTLA+   A Y   K+    LDF DLI  T  LL  R  +AW+ YK+D  I+HI
Sbjct: 339  ADTLDALTLAEAYLAAYRVEKQLAGALDFADLIEKTRALLASRPAAAWVLYKLDGGIDHI 398

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP---RTLFAVGDEKQSIYSFHGAEPKRV 237
            L+DE QDT+  QWE++R+LT +FF G+         RTLF VGDEKQSIYSF GA+P+R+
Sbjct: 399  LVDEAQDTAPDQWEIVRALTGEFFAGEALPRRGELDRTLFVVGDEKQSIYSFQGADPERL 458

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            + E R        AG+  + + L  SFRST ++L  VD VF                + H
Sbjct: 459  ILETRRYVAEIAAAGRNGASVPLHASFRSTEEVLAFVDAVF------GAGVPPGVEPLEH 512

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
               R G+ G V LW              +E+W +  D   +ES+   LAR IA  I +++
Sbjct: 513  IPMRAGERGCVDLWPL----EREPKGEAREAWDAPLDVEGEESATKRLARNIACEIRDLV 568

Query: 358  GTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                 +     +R  +  D+L+LVRKR    L   + R LK    I V G DR  L++H+
Sbjct: 569  RRGDAVADRDGRRPARYGDVLILVRKR--GALFEEILRALK-HAGIPVAGADRLALSEHI 625

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
               DLMAL RF L   DDL+   +LKSP  +  +  +F +   R    +++  +   A  
Sbjct: 626  VFDDLMALARFALFPADDLTLAALLKSPFCDLDDAALFDLAHGRE--GSLWRTLLARAGE 683

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVIDVLDE 531
                +     ++  +   A+   P  F+   LG +       R + + R G E  D LDE
Sbjct: 684  -RPDWAAAAGFLQAMREAAREHGPFGFYARALGVRGSDGRSMRSRLLRRLGAEAQDALDE 742

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            FL   L  E      L+ L ++       +KR      +EVR+MT H AKGLE+P+V L 
Sbjct: 743  FLAQVLAAEGRGVHDLETLAADFAGLDIIVKRELEGGRDEVRVMTAHGAKGLEAPIVVLP 802

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            +T S   +          P L    G  +W    K+     +      +    EE  RLL
Sbjct: 803  ETTSDQGARGS-------PMLETADGGFLWCASGKADCEASAAARALRQDKETEESLRLL 855

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YV +TRA ++LI+C     SN K+   + W+  +   F ++     ++            
Sbjct: 856  YVALTRARERLILCG-RIPSNRKEDGLKGWWAAIRAGFEHEAIAPHLRQAACGEVLATRY 914

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
                         +              P + F+            +PS +         
Sbjct: 915  GPDPEPLGRRVAADAVAAAAPAWSAVSPPPEAFARYA---------SPSDLGEGTVVAAP 965

Query: 772  SLLSDNQT---FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
            S L+  Q    F RG +IH+LLQ++  L   +R     +   +   L    +   +  + 
Sbjct: 966  SPLAAAQGLGRFRRGDLIHRLLQLLPDLAPPERAAGAAALLRRETDLADD-QRAEMAAAA 1024

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
              +LE+P         S +EV+++G        + ISGRID++ I    + + ++KT+  
Sbjct: 1025 LSVLEDPRFAEVFGPGSRAEVAIAGGAAALPPALRISGRIDRLVILPDRVLVADFKTNRP 1084

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
             P  IE     ++ Q+++Y  +L + +P + +   L++   PK+  +P+N + +A AE+ 
Sbjct: 1085 SPGRIEDADPAYLRQMALYSAVLAEVFPGRRIEAALVWTDGPKLMPVPENLMAQALAELR 1144

Query: 949  TK 950
              
Sbjct: 1145 RS 1146


>gi|85373841|ref|YP_457903.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis
            HTCC2594]
 gi|84786924|gb|ABC63106.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis
            HTCC2594]
          Length = 1150

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 222/962 (23%), Positives = 402/962 (41%), Gaps = 63/962 (6%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
               GL  +   + +   L     F + ++   ++   + G    ++  + ++        
Sbjct: 221  RLLGLPSDYGEDDV-AVLCSDDAFAMPELRHCIATLEDWGTKGAVEAVEAVRDWMAGDAK 279

Query: 63   EER--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                   + +    T      KN+    I K+    + +     D    + ++     + 
Sbjct: 280  ARLAGIGVFNGTLFTATGEKPKNLHH--IAKRDEGYEAQALAVLDAVNAVHEKMGLLALA 337

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +  + +LTL +     +++ K++  ++DF+D I   + LLK   ++ WIRYK+D++ +HI
Sbjct: 338  EYLVPALTLGRNFALAWDDRKRREGLIDFDDQIRRASQLLKNSALADWIRYKLDRQFDHI 397

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRVLR 239
            L+DE QDT+  QW++IR+LT DFF G        RT+F VGD KQ+I+ F G  P+    
Sbjct: 398  LVDEAQDTNQAQWDIIRALTGDFFTGFGQREDKLRTIFVVGDYKQAIFGFQGTSPQNFAA 457

Query: 240  EKRINQKRATNAG------------------QKFSIIELPLSFRSTADILTVVDKVFSIP 281
            +K I ++    A                   +    + L  S+R+   +L  VD      
Sbjct: 458  QKEIYRREIDAAIANAEALARDTRSKPVVDLRALQDLGLDRSYRTAQPVLDFVDHAIEAI 517

Query: 282  ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                G +         R     + G V LWE VV+  +    P +E W            
Sbjct: 518  ----GHTSIGLEREADRHEGDTRPGYVALWEPVVAGAEDDGEPSEEGWLP--------GP 565

Query: 342  ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               +A RIA  +   +      + G KR     DI+VLVRKR++      L     +   
Sbjct: 566  ERAMADRIADQVREWLDKGHPLAKGTKRNAGPGDIMVLVRKRRELAG---LIVARLHARG 622

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            + V G DR  L   LA+KDLMA  RF     DDLS   +L SPL  +S++D+ +    R 
Sbjct: 623  VPVAGVDRLRLGAPLAVKDLMAALRFAAQPLDDLSLANLLVSPLGGWSQEDLLEHGY-RP 681

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISR 520
            +   ++++++K  +         ++ + +L+    +  P      IL G  +GR + ++R
Sbjct: 682  DKVRLWDHLRKSEHPF---VVETVERLRQLLQRVDYELPEALLHWILTGPWRGRAKLVAR 738

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
             G E  D +DE +N          +S+Q  I   +     +KR    +   VR+MTVH +
Sbjct: 739  LGREANDPIDELVNAAFAYSATDTASVQGFIQWFDAGEGELKREPGGDDGLVRVMTVHGS 798

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGL++P+V L D                +        +PI       ++  V++  +  K
Sbjct: 799  KGLQAPIVILADATG--NPDASRTGGLELQEDTSGKSVPIPALPKDEKHGPVAEAEQAAK 856

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
             + +EE+ RLLYV MTRA + L +         KK      +           R++ + L
Sbjct: 857  AAEREEHWRLLYVAMTRAEEALYVGGALGQRELKKGPAEDSWY---------ARLEPLFL 907

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
             +++    W A       PE      +        +  +P     PI  +   P  L PS
Sbjct: 908  DDALADPIWGARRERGALPEPIVSSGD---VDPPAQINLPDWATQPIGPEPKPPRPLAPS 964

Query: 761  TI-DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
            +  + +G +         Q   RG+++H LL+ +  +   +R+    ++  + A      
Sbjct: 965  SAGEEQGASPPLPPEIAAQAARRGVLMHSLLERLPDVTPAEREVRARAWLAQQAPEIADD 1024

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
            E   +L     +L+ P      + D+ +EV ++  +       +I+G  D++ ++   + 
Sbjct: 1025 ERDEMLCRALAVLDEPGFAPIFAPDALAEVPLAAVVA----GQVIAGTADRLLVTDDEVL 1080

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            + ++KT    P  IE IP + I Q++ Y   L+  YP+K++   ++Y   P++F +P   
Sbjct: 1081 VVDFKTARRPPAAIEDIPASIIRQMAAYVAALESIYPDKNVRAGVLYTQTPQLFALPAAT 1140

Query: 940  LN 941
            L 
Sbjct: 1141 LA 1142


>gi|149184293|ref|ZP_01862611.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21]
 gi|148831613|gb|EDL50046.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21]
          Length = 1159

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 210/969 (21%), Positives = 390/969 (40%), Gaps = 54/969 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            ++   G+   ++ E    +     +F V  +   +         +       +Q     +
Sbjct: 216  VRRLLGI-PVDADEHWVAEACSDRHFPVDTLRAMLPAFDGWNTKSAETSRGFIQHWLAIE 274

Query: 61   CIEERFSLL----SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                   +      +  L +   P      +   K  P   +K +   D   ++ +R   
Sbjct: 275  PEARLAEIDGFRQRNCILKKDGDPTSM---KGAEKNDPSFGDKQQVIADAVREVAERAAL 331

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
              +       L   +     +EEAK +  ++DF+DLI     LL    ++ WIRYK+D+ 
Sbjct: 332  LGLAAFVAPQLEAGRAFAKRWEEAKAREGLVDFDDLIHRAARLLSSSQMADWIRYKLDRS 391

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPK 235
             +HIL+DE QDT+  QW ++++LT+D+F G        RT+F VGD KQ+I+ F G  P+
Sbjct: 392  FDHILVDEAQDTNKAQWAIVKALTDDYFDGLGARGDAVRTIFTVGDYKQAIFGFQGTSPE 451

Query: 236  RVLREKRINQKRATNAGQ------------KFSIIELPLSFRSTADILTVVDKVFSIPEN 283
                 +   + +   A              +    +L  S+R+   +L+ VD        
Sbjct: 452  NFREARDYFRDKMDRAAVAAEEARANANTGRLQEFDLERSYRTNQTVLSFVDDAIRAI-G 510

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             +GL  D +      S      G V LW+++          +++ W +  D    ++ A 
Sbjct: 511  PEGLGLDKSDGEHRGS---DTPGMVTLWKEIRIAEGGDDADEEKGWLARHDRKLADNIAR 567

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             +A           G       G+ R  QA D++VLV+KR     +  L       + + 
Sbjct: 568  QVADWFDTK-----GEGFTLVKGETRRAQAGDVMVLVQKR---RELASLIVARLYAHGVP 619

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
            V G DR  L + LA+KDLMA  RF     DDL+   +L SPL  +S++D+  +   R + 
Sbjct: 620  VAGVDRLRLGNPLAVKDLMAAIRFAAQPLDDLTLANLLVSPLIGWSQEDLL-VFGYRTKG 678

Query: 464  ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFG 522
              ++E+     +    +    +  + E++  A F SP      IL G   GR+  ++R G
Sbjct: 679  VRLWEH---LRSSDEPRVAQTVHTLREILRRADFDSPQQLLHWILVGPMDGRRALVARLG 735

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
             E  D +DE LN       +  +SLQ  I   +     +KR      ++VR+MTVH +KG
Sbjct: 736  REANDPIDELLNAANAFAASHVASLQGFIRWFDAGDGELKREAGEGGDQVRVMTVHGSKG 795

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            L++P+V L D+  +  +   +     +    +   +P+    S  +   V  + +     
Sbjct: 796  LQAPIVILADSAIRPDASGELTLEEQVLGAEETNTVPLPALTSDEKVGPVRAVEEVDAAR 855

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            + +E+ RLLYV MTRA + L I       + K                +    +   L +
Sbjct: 856  SMQEHWRLLYVAMTRAEEALFIGGSLGPRDAKNGP-----------HEDSWYARLAALFD 904

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
            +    +   +       E  P              ++P     P+  +   P  L PS +
Sbjct: 905  TDTALDDPIWGARWEVGERAPSVPPVETTVPEPVCELPLWAKQPVGPEPRPPRPLAPSGL 964

Query: 763  -DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
             + +G               RG++IH LL+ +  +P   R +   S+  + A      E 
Sbjct: 965  GEAEGSDPPLPPEVAAGAARRGVLIHALLERLPEVPRDHRADRARSWLAQQAPDLDNTER 1024

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
            + +L     +LE P         + +E+ ++  +    +  ++ G  D++ ++ + I + 
Sbjct: 1025 EEMLARALAVLEEPGFADIFGAQALAEIPLAATV----EGQVVMGTADRLLVTPEKITVV 1080

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
            ++KT    P     IP + + Q++ Y   L+  YP +++   ++Y   P++  +P  +L 
Sbjct: 1081 DFKTARRPPASQGAIPDSTLRQMAAYVAALEAIYPGRTVEAAVLYTQTPQLIALPGERLA 1140

Query: 942  KAFAEISTK 950
               A  + +
Sbjct: 1141 AYKAAFADR 1149


>gi|295687598|ref|YP_003591291.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC
            21756]
 gi|295429501|gb|ADG08673.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC
            21756]
          Length = 1153

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 251/962 (26%), Positives = 427/962 (44%), Gaps = 46/962 (4%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R G     S E +      +    +       ++  + G     K A+ L   ++ Q   
Sbjct: 221  RCGFDAPTSAEELAAKA--MARLDLGAWRAAATVLFDGGGKQDAKYAEALAAVARDQDAT 278

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
               +L + F    + TP          K   DL+E L   Q +    R++    K+ + T
Sbjct: 279  LELALRALFTEGGEGTPATWPAKTSGLKSREDLREALLLEQAKLETAREQVRAAKVAEDT 338

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
              +L LA      +   K     LDF DLI  T  LL ++  +AW+ YK+D  ++HIL+D
Sbjct: 339  QNALLLAGLYIERHMAEKDARGALDFTDLIDKTRVLLTEKVEAAWVLYKLDGGVDHILLD 398

Query: 184  EVQDTSLIQWEVIRSLTEDFFVG-----KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            E QDT+  QWE++R+LT DFF G      +   + RTLF VGDEKQSIYSF GA+P R+L
Sbjct: 399  EAQDTAPEQWEILRALTADFFAGATSEGWSGRRAERTLFIVGDEKQSIYSFQGADPTRLL 458

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRH 297
             E +    R    G     + L +S+RST  +L+ VD +FS PE  +G+        +RH
Sbjct: 459  EETQGYIARIEAVGAVGKGVPLTVSYRSTHQVLSFVDALFSDPETREGVPPPVGHDLVRH 518

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
               R G  G V LW             ++E+W +  D+  + S+   LA  IA   + ++
Sbjct: 519  ELFRHGHPGCVDLWPLTREL----PGEEREAWEAPVDAEGERSANRRLAEAIAAETAAIL 574

Query: 358  GTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                   +   G+ R   A DILVLVR+RK   L   + R LK    + V G DR  L+ 
Sbjct: 575  KRGDAVFDKELGRHRAAHAGDILVLVRRRK--VLFEEIIRALK-RRGVPVAGADRLSLSS 631

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
            H+A +DL+ALGRF+L   DDL+   +LK+P    ++DDI+ +   +    T++  +Q+ +
Sbjct: 632  HIAFEDLLALGRFVLFPNDDLTLAALLKAPFCGLADDDIYAL--AKSRRATLWTELQRRS 689

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVIDVL 529
                  +      +   +   +   P +F+   LG         R + ++R G E  + L
Sbjct: 690  QERAE-WTAARAVLEWALAEGRRRQPFEFYAAWLGLTDEDGRSHRAKVLTRLGAEAEEAL 748

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            DEFL   +  EQ     L+ L+++       +KR       EVR+MT H +KGLE+P+VF
Sbjct: 749  DEFLAQVMEAEQRGVRDLEALVADFAALDIIVKREMEGARREVRVMTAHGSKGLEAPIVF 808

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L +T  +  +          P L  + G  +W    K   +  +   +       +E  R
Sbjct: 809  LPETTVKRGAGGS-------PLLVTEDGGLLWCASGKGDCDASAKARRLRDDKESQEALR 861

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV +TRA D+LI+C   +   +       +  +     H D       L      ++ 
Sbjct: 862  LLYVALTRARDRLILCGRIDARTKDDKVGGWYAAVRAAFAHADIAPHVRPL-----GEDE 916

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
             A+      P   P   E     +      P  +      +        PS I+   +  
Sbjct: 917  TAFLRYGPDPAPAPRAEE----DIRVPATAPDWMTHAAPPEPAAARYAAPSRIEDNARVP 972

Query: 770  LESLLSDNQTF---NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
              S L+         RG ++HKLLQ++  L    ++           +     + + +  
Sbjct: 973  APSPLARVAGLGRYRRGELVHKLLQILPDLAP-DQRASAARRLLAAERDLTDDQREEMAA 1031

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
            +   +L++   +      S +EV+++G      + + +SGR+D++ + +  + + +YKT+
Sbjct: 1032 AAFGVLDDARFSAVFGPGSRAEVALAGTSAHLPQGLAVSGRVDRLVVDEGRVLVVDYKTN 1091

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
               P  IE     ++AQ+++Y  +L++ +P +++   L++   PK+  +P+  + +A A 
Sbjct: 1092 RPSPDRIEDADPAYLAQMAVYAAVLREVFPGRAVEAALVWTDGPKLMPVPEKVMAQALAR 1151

Query: 947  IS 948
            ++
Sbjct: 1152 LA 1153


>gi|294084828|ref|YP_003551588.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664403|gb|ADE39504.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 1162

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 229/972 (23%), Positives = 403/972 (41%), Gaps = 63/972 (6%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            ++   +   +       +   L       +             T   +            
Sbjct: 216  RDDLDMPEADFVTQHIAEA--LAKIDDEALRAVAVALQNAKTETQRDRGAAFFAWLALDD 273

Query: 62   --IEERFSLLSSFFLTQKF-TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                 R +LL     T K     +N+   +I  + P + +  +   D    I     T +
Sbjct: 274  EMRIARLNLLVDALFTTKGPRADRNLSNADIRAEYPPIVDVQRAVIDILTPILHMMATDR 333

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              + T A          HY+  K+   +LD++DLI  TN LL + + + W+ +K+D  I 
Sbjct: 334  CRELTTALYIFGAAFQRHYQSLKESRGLLDYDDLIAVTNRLLARSEAAQWVAWKLDNGIG 393

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVG--------------KNTHSSPRTLFAVGDEKQ 224
            H+L+DE QDTS  QW ++  L E FF G               +   +PR++FAVGD KQ
Sbjct: 394  HVLVDEAQDTSPAQWTLLLRLVESFFDGSDMPVAASSIASDTADMDIAPRSVFAVGDFKQ 453

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            SIYSF GA+PK +   + + + +A  A   F  + L +SFRSTA IL +V+ +    +  
Sbjct: 454  SIYSFQGADPKVLGENRTLLRNKAMAAEIDFRALSLSVSFRSTAPILGLVNDLIPDLDGI 513

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
            +         + H  +R  + G V++W  +    D+  + ++    +  +    + ++++
Sbjct: 514  EDF-------VSHDLARRHKGGFVEVWPII----DAPVDEEKTEGFTPANIASMQGASAV 562

Query: 345  LARRIAYTISNMIGTDTIF---SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             A  +A T+ + IG   +    ++   R I A DIL+L+RKR        +   L  +  
Sbjct: 563  AASHLARTLKSWIGKRPLPSSDNDHMPRKIMAGDILILLRKRD--VFFEQVLVAL-QEQG 619

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            ++V G DR  L D + I+DL+ALG   L  +DDL    +LKSPLF  SE  +F +   R 
Sbjct: 620  VAVAGADRMRLVDQIEIQDLLALGDVALLPDDDLQLAALLKSPLFGISEAQLFDLAHDRG 679

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                  + ++   +        +   + E   +    S   FF+ +L    GR +F +R 
Sbjct: 680  SHSLFRQLMRYLGSN--DPLGRIADRLEEWCRLVDGGSVFSFFSKVL-VDGGRDKFRARL 736

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTA 580
            G+ V + LD FL       ++   SL   ++ +      +KR   A + +EVR+MT+H A
Sbjct: 737  GSSVDEALDHFLAVAQSYGESGGVSLTAFLAAVRAGGGDVKRDMDAGNVDEVRVMTIHGA 796

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE+P+V L D       H  +          +D     W   S  R   +    +   
Sbjct: 797  KGLEAPIVILPDMLRHSVPHSPLI-------TGEDQRFIYWEAGSHLRPPFLETARQKAS 849

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
                EE NRLLYV +TRA D L+I          +  + + Y  +   F   + V    +
Sbjct: 850  DLRAEEDNRLLYVALTRARDGLVIGGWEK--RNSRWLENSPYSRIKAYFTEHKDVV-EDV 906

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
               +        E  +  P     +    +  +  E      L  P  +   +   L PS
Sbjct: 907  DGVLRHIAKTVSEADSVFPSMPDDDAAMRVPDIASEPADTSWLHHPAPDLPPDARPLRPS 966

Query: 761  T-IDTKGKTNLESLLSDNQ----TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
               +      L   ++D++       RG + H+L +++ T+P+ +R             +
Sbjct: 967  EPANLYAPHPLGFGVTDSRTQAMALTRGRLAHRLFEMLPTVPQDQRNTVADRMIATV-DM 1025

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
                +   L   +  +L +P      + D+ +EV V+G +        +SG+ID++ +  
Sbjct: 1026 LSPAQGAQLKNEVFTILNDPRFGNLFTPDALAEVPVTGMVRDRG----VSGQIDRLFVGD 1081

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             ++ I ++KT           P T+  Q+++Y  ++ + +PNK +VC LI+    ++  I
Sbjct: 1082 DSVIIADFKTGIANEDSP---PETYQRQMALYAALIGEIFPNKPIVCWLIWTETARLQEI 1138

Query: 936  PQNKLNKAFAEI 947
              +    A A I
Sbjct: 1139 TASMRALALARI 1150


>gi|294675594|ref|YP_003576209.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
 gi|294474414|gb|ADE83802.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
          Length = 1121

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 227/949 (23%), Positives = 384/949 (40%), Gaps = 46/949 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+   GL+ +   E +  D   LP      +       ++T + T+   A  L       
Sbjct: 208  LRKVLGLAPDLRPETLP-DAVFLPGTDR--VIAAAIPLLKTQSATMKTLAAQLSLLDLLA 264

Query: 61   CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKS-PDLKEKLKKSQDEFIKIRDRFNTYK 118
                  + L+   L +  +      +T+   +   PDL E +    +     R++ N   
Sbjct: 265  PGPADLARLADLCLVKDGSRVSSRFLTKGAIEAFGPDLAEDVLDLAERVRWAREQENALA 324

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                TLA    A+ L       K +   LDF+DLI     LL    V+ W+ +++D  I+
Sbjct: 325  TLNRTLALHDFARVLLPALALKKAQGGWLDFDDLIERAGALLSDPSVAQWVLFRLDGGID 384

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QDTS  QW VI  L ++F  G     S RT+F VGD KQSIYSF GA+     
Sbjct: 385  HILVDEAQDTSPGQWRVIERLADEFTSGDGARDSRRTIFVVGDRKQSIYSFQGADLTHFE 444

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              K +   +     +      L  SFRS+  IL +VD  F         +        H 
Sbjct: 445  AMKSLFSAKFAAISRPLQDAALLHSFRSSLAILRLVDLTF-----RGDPALALGGAPEHL 499

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            +      G V LW  V     ++       W    D    +++  +LAR IA  I  M+ 
Sbjct: 500  AFHDKLPGRVDLWPVVPKPDKTEPEE----WDDPVDRPGADTAPVVLARAIAAEIRAMVD 555

Query: 359  TD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                +      R + A D L+LV++R    L   +    K    + V G DR  L   LA
Sbjct: 556  AGVQLPGREGPRPVTAGDFLILVQRRSG--LFYEIILACKAQ-GLEVAGADRLKLGGELA 612

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            +KD++++  F+ + EDDLS    L+SPLF +SED +F++   R     ++  +++  +  
Sbjct: 613  VKDIVSVLAFLATPEDDLSLAEALRSPLFGWSEDQLFRLAQPRK--GYLWAALREAGDE- 669

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                   +  + +L+  + F  P+D    +L   +GR++ ++R G E  + +D  +   L
Sbjct: 670  -----ATLTVLRDLLDRSDFLRPYDLIERLLTRHEGRKRLVARLGAEAEEGIDALIAQAL 724

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              EQ    SL   +  L      IKR   +    +R+MTVH +KG+E+P+V L DT    
Sbjct: 725  AYEQTEVPSLTGFLVWLGADEIEIKRQSDSAGTALRVMTVHGSKGVEAPIVILPDTAKLR 784

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             S +          L    GIP W   + +   +++     + +  + E  RLLYV MTR
Sbjct: 785  NSQR--------GELLLAEGIPFWKSAAATLPPVLAQAQAEVLERQRHERLRLLYVAMTR 836

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-DEWIAYEWST 716
            A   LI+        +++    +W+ +V     +        L+  +      + +    
Sbjct: 837  AEKWLIVATA----GDEEEGAESWHALVSGGMKSAGTETVSALSEPLQALGPVLRFSHGD 892

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-SLLS 775
                 TP+   E +        +P      +         L+ S +        E + LS
Sbjct: 893  WPENGTPVGAAEVV-----RIALPNWARERVLPVHKTAKALSASDLGGPKALPGETAELS 947

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
                  RG  +H LL+ +   P     +   S            E + LL    ++L   
Sbjct: 948  TEAAMLRGRRLHLLLEHLPQAPSETWPDLAQSLLGFGNDRAFPDEIEALLTRALQVLTAV 1007

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
                 +  D+ +EV ++ ++        + G ID++ I    I + +YK++  VP     
Sbjct: 1008 EKAGFLGPDTLAEVELTAELP-ELGGQRLHGIIDRLQIGPDRIRVLDYKSNAIVPNTAAE 1066

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
            +P   + Q++ Y   L+  YP +++ C L++     V  +    L +A 
Sbjct: 1067 VPLGLVRQMAAYRAALRQIYPGRAVECFLLWTETGAVMPLGDTLLEEAL 1115


>gi|329891017|ref|ZP_08269360.1| double-strand break repair helicase AddA [Brevundimonas diminuta ATCC
            11568]
 gi|328846318|gb|EGF95882.1| double-strand break repair helicase AddA [Brevundimonas diminuta ATCC
            11568]
          Length = 1119

 Score =  489 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 243/947 (25%), Positives = 405/947 (42%), Gaps = 66/947 (6%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G    ++ E I  D     +    ++ +   L M TG+ T   +A  L  A      +  
Sbjct: 229  GADPQKTPEDIEADFLR--WLDRGEVRRMAEL-MATGSKTDKDRAAELIHAL---DHDWS 282

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            F  L   FLT   +P+K++ T   +K  PD    L   QD+F+  RD+    K+   T+ 
Sbjct: 283  FHGLGVVFLTGSGSPRKSMAT---SKAPPDAAGWLADLQDKFLAARDQLRAAKVANDTIR 339

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             LTLA    A YE AK  +  LDF DL+  T +LL  R  +AW+ YK+D  ++H+LIDE 
Sbjct: 340  LLTLANAHAALYEAAKTAHGALDFSDLVARTVELLTVRSTAAWVLYKLDGGVDHVLIDEA 399

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT+  QW ++R+LT +FF  + T    RT+FAVGDEKQSIYSF GA P+R+ +E ++  
Sbjct: 400  QDTAPEQWAIMRALTGEFFTVEGTD---RTVFAVGDEKQSIYSFQGARPERLRQEAQVYD 456

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
               T AG  F  + L  S+RST  +L+ VD+VF+ PE A+ L  ++     H ++R GQ 
Sbjct: 457  GLITGAGGAFEGVPLETSYRSTEAVLSFVDEVFATPERARALVGETGEIPHHTAARQGQP 516

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
            G V+LW   V     +  P++++WT   D     S+   +A+ +A  I   + +  +  +
Sbjct: 517  GAVELWPLFV----DEAPPERDAWTDPVDQEGTASARKRMAQTLALEIKRQVESGAVVFD 572

Query: 366  --GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
              G  R     D L+LVR+R        + R LK      V G DR  L+ H+   DL A
Sbjct: 573  KSGSARPCGYGDFLILVRRRD--ATFEEIIRALKA-AGAPVAGADRLKLSQHIVFDDLKA 629

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            L RF L   DDL+   +L+ P  +  ED +F++  +        E  ++       ++  
Sbjct: 630  LARFALFPGDDLTLAEVLRGPFCDVDEDSLFELAGREKRDGLWRELKRRAD--ERPEWSR 687

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKK-----GRQQFISRFGNEVIDVLDEFLNFTLR 538
             +  +      A+   P  FF+ +L         GR + ++R G E  + +DE LN  L 
Sbjct: 688  ALDLLRAARG-ARDLDPFGFFSSLLNRVDATGQSGRARILTRLGREAEEAVDETLNQVLA 746

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E      L+  ++ LE     +KR       EVR+MTVH AKGLE+PVV L DT  +  
Sbjct: 747  AEGRGGIDLETCLALLEAADVEVKRELEGPRGEVRVMTVHGAKGLEAPVVILPDTTMKAK 806

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +      +  +P  +      +    SK      ++     +    +E  RLLYV +TRA
Sbjct: 807  AQG--PSLMPVPLEDGVEAWLMCPGSSKEDCPASAEARAAREARVGDESLRLLYVALTRA 864

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             D++I+       +++      W+ ++ ++F       +         +           
Sbjct: 865  RDRVIVMG---RGSKRAPEAGDWWSVIEETFGRLGDQVR---------ELDGGVRRYGAD 912

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            P++ P        +                                              
Sbjct: 913  PDSLPAAVAAAQMRAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 972

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
                                                         ++ +   +L++    
Sbjct: 973  -----------------------XXXXXXXXXXXXXXXXXXXXAEMIAAAFGVLDDARFA 1009

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
                  S +EV+++G        + ISGRID++ ++ Q + + ++K++   P + E    
Sbjct: 1010 PVFGPGSRAEVALTGTAPDLPSGVSISGRIDRLVVTPQRVLVVDFKSNRPAPDQAEDADP 1069

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
             +I Q++IY  +L+  YP++++   L++   PK+  +PQ  ++ A  
Sbjct: 1070 AYILQMAIYAAVLRRLYPDRAVEAALVWTDGPKLMALPQGLMDAALE 1116


>gi|94496379|ref|ZP_01302956.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
 gi|94424125|gb|EAT09149.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
          Length = 1144

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 211/946 (22%), Positives = 386/946 (40%), Gaps = 51/946 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +    GL  +   +    D      F +  ++  V  + + G    L++   +       
Sbjct: 222  IAAELGL-PDGDVDQWLADQCRDDIFDMRALDWIVRANADWGKGRGLERCDRIAAWRALD 280

Query: 61   CIEER--FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                      L   +             +          E   +      ++        
Sbjct: 281  PAGRAAGLIELHRAWAKADGDIIDA---RGWVPPIDGYGEMAARLHSRCGELIALKLRAD 337

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                   +L   +     Y  AK+    +DF+DLI  T  LL++  ++ WIRYK+DQ I+
Sbjct: 338  YAALLAQALHAGRAYAREYATAKRLAGAVDFDDLIARTAALLEQPGIAEWIRYKLDQRID 397

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL+DE QDT+  QW ++R+L E+FF G        RT+F VGD KQ+I+ F G  P+  
Sbjct: 398  HILVDEAQDTNAAQWRIVRTLAEEFFSGAGAKGDKVRTVFTVGDFKQAIFGFQGTSPQNF 457

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
               + + Q+ A +AG  F  + L  SFRST  +L VVD+  +     +           H
Sbjct: 458  AAAQLLFQRDAMDAGHDFHSLSLDRSFRSTPAVLDVVDRTIATLRAER---LGLEAGEVH 514

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
              S     G V LW+ VV+      + +++           +    +LA+RIA  I   I
Sbjct: 515  HDSANRHPGEVTLWKPVVANMTEDADGEEDW---------ADDQERVLAQRIARQIKQWI 565

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                +  +   R ++A DI++LVR+R +      L      + +++V G DR  L   LA
Sbjct: 566  DNGVMLESRG-RPVRAGDIMILVRRRSELAR---LIVARLYEEQVAVAGIDRLRLNAPLA 621

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            ++DL+A  RF +  ED+L+   +L SPL  +++D++      R      +          
Sbjct: 622  VRDLLAALRFAVQPEDELNLASLLVSPLIGWTQDELMNRLVGRRTGLWRHLNQTLDD--- 678

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                   +  +  L+ +A F +P+ +   I+ G   GR++ I+R G E  D ++E LN  
Sbjct: 679  -----EALGPLRNLLAVADFSTPYRYLEAIVSGPMDGRRKLIARLGAEAADPIEELLNAA 733

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            L  EQ+ + SLQ  I   ++    I R  +   + +R++TVH AKGL++P+V L D    
Sbjct: 734  LAFEQDDHPSLQRFIDWFDRGEVEIVRDAAGQGDMLRLLTVHGAKGLQAPIVILADACLD 793

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              +            + +  G+PI  P+   R   + D+ +   +  +EE+ RLLYV +T
Sbjct: 794  PDAGNRA-------DMLEWNGLPILPPRKAERQGPIGDVAEEAAQIEREEHWRLLYVALT 846

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA ++L++        + +    +W+  V  +  +     +           W A     
Sbjct: 847  RAEEKLVVAGSLGPRAKGEVKPESWFAAVEGAMISLGAQWEA-------DPLWGAARRWR 899

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
               +    +              P  L      +   P  L PS              + 
Sbjct: 900  GAEQLPSKDAAVEDAPADLATDTPSWLRQAAPAEARPPRPLAPSAQVEDDVPYPPPTPAM 959

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                 +G ++H L + +  L  ++R +    +  +   L  A E + L+    R+++ P 
Sbjct: 960  RAAAEKGRLLHALFERLPGLGANQRASAADRWLAQQG-LIDAYERQQLIDQALRVIDAPD 1018

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                    + +E  ++  +     + +I+G +D++ +    +   ++KT    P  +  +
Sbjct: 1019 FANLFGPGALAEAPIAAVV----GEAVIAGTVDRLCVGADRVQFVDFKTGRVAPSTLADV 1074

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            P +H+ Q++ Y   L   +P + +   L+Y S P++  +P   L  
Sbjct: 1075 PTSHLCQMAAYAAALGVIFPGRQIEAGLLYTSVPRLITLPPALLAA 1120


>gi|307292809|ref|ZP_07572655.1| double-strand break repair helicase AddA [Sphingobium
            chlorophenolicum L-1]
 gi|306880875|gb|EFN12091.1| double-strand break repair helicase AddA [Sphingobium
            chlorophenolicum L-1]
          Length = 1147

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 220/946 (23%), Positives = 395/946 (41%), Gaps = 52/946 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    GL   +    I +       F +  ++     + + G    L++   + +     
Sbjct: 224  LLRELGLPEGDIEAHIAEQ-CADDLFDMRTLSWIAQANADWGTGRALERCDRIARWRNLG 282

Query: 61   CIEERFSL--LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
              E   SL  L   +             +    +     + + +  +   ++        
Sbjct: 283  PAERAASLTDLHGVWAKADGELISTA--KGWAPQVDGYGDAIARMHERCGELLGIRVRAA 340

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                    L   +     Y EAK+    +DF DLI N+  LL +  ++ WIRYK+DQ I+
Sbjct: 341  YAVLLAKGLQAGRVYARSYAEAKQLAGAVDFNDLIANSAQLLSQPGIADWIRYKLDQRID 400

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL+DE QDT+  QW ++RS+ E+FF  +       RT+F VGD KQ+I+ F G  P+  
Sbjct: 401  HILVDEAQDTNADQWRIVRSIAEEFFTAEWEPGQKVRTIFTVGDFKQAIFGFQGTSPQNF 460

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN-AQGLSEDSTTTIR 296
               + + ++ A  AG  F  + L  SFRST  +L VVD+  +       GL       + 
Sbjct: 461  AAAQFLFERDARQAGHLFHDLSLERSFRSTPAVLDVVDRTIATLSAERFGLEAGEVRHVS 520

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                     G V LW+ V++    +   +++                +LA+ IA  I   
Sbjct: 521  ANRF----PGEVLLWKPVIAGLSEEAEGEEDW---------AADQERVLAQTIARQIRQW 567

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
            I    +  +   R + A DIL+LVR+R +      L      + K++V G DR  L   L
Sbjct: 568  IDDGLMLESRG-RPVTAGDILILVRRRSELAR---LIVARLYEEKVAVAGIDRLRLNAPL 623

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            A++DL+A  RF +  EDDL+   +L SPL  +++D +      R     +++++ +  + 
Sbjct: 624  AVRDLLAALRFAVQPEDDLNLAALLVSPLIGWTQDALMDRLIGRRVG--LWQHLTQTLD- 680

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNF 535
                   +++ +  L+  A F +P+ +   IL G   GR++ I R G E  D ++E LN 
Sbjct: 681  -----AALLEPLRGLLGQADFTTPYRYLEAILSGPMDGRRRLIERLGAEAADPIEELLNA 735

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             L  E + Y SLQ  I   ++    I R  +A  + +R++TVH AKGL++P+V L D   
Sbjct: 736  ALAFENDDYPSLQRFIDWFDRGEVEIVRDAAAQGDMLRLLTVHGAKGLQAPIVILADACL 795

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
               +              +  G+PI  P+   R   +  + +      + E+ RLLYV +
Sbjct: 796  DPDAGNRA-------DSLEWNGLPIIAPRKAERQGAIGQVAEEASAVERAEHWRLLYVAL 848

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA ++L++        + +    +WY  V  +  + +   +           W A    
Sbjct: 849  TRAEERLVVTGSLGPRAKGEVKPESWYAAVEGALISLDAEWEA-------DPLWGARRRW 901

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
              H    P   E  I +       P  L  P   +   P  L PS              +
Sbjct: 902  RGHEILPPKAAETDIAENGAVHGEPGWLRKPAPVEARPPRPLAPSATVEDDVPYPPPTPA 961

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
                  RG  +H+L + +  +P   R+     +  +      A    +++    R++E+P
Sbjct: 962  MRDAAERGRWLHRLFERLADVPPGDRRARADKWLAQQGLG-DAARRHDVIEQALRVIEDP 1020

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
                    D+ +E  ++  +     + +I+G +D++ I    + + ++KT    P  +E 
Sbjct: 1021 QYAALFGPDALAEAPIAAVV----GEAVIAGTVDRLRIGDDLVQLIDFKTGRISPLAVEE 1076

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
            +P  H+ Q++ Y   L+  +P + +   L+Y + P++  +P + L 
Sbjct: 1077 VPLAHVRQMAAYAAALQVIFPGRRIEAGLLYTAAPRLITLPSDLLA 1122


>gi|294011636|ref|YP_003545096.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S]
 gi|292674966|dbj|BAI96484.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S]
          Length = 1147

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 216/947 (22%), Positives = 393/947 (41%), Gaps = 52/947 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--SQ 58
            L    GL   +    I +       F +  +      + + G    L++   + +     
Sbjct: 224  LLRELGLPEGDIDAHIAEQCGDE-SFDMRTLVWIAQANADWGTGRALERCDRIARWRALD 282

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                    S L + +             +          + + +  +   ++        
Sbjct: 283  PAGRAAALSDLHAVWAKAGGELIST--GKGWAPSVDGYGDAIARMHECCSELLGLRVRAA 340

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                   +L   +     Y EAK+    +DF+DLI NT  LL +  ++ WIRYK+DQ I+
Sbjct: 341  YAALLARALHAGRAYARAYAEAKRLAGAVDFDDLIANTAQLLSQPGIADWIRYKLDQRID 400

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL+DE QDT++ QW+++ +L  +FF G+       RTLF VGD KQ+I+ F G  P+  
Sbjct: 401  HILVDEAQDTNVSQWQIVGALAAEFFAGEGAKGDRVRTLFTVGDFKQAIFGFQGTSPEAF 460

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN-AQGLSEDSTTTIR 296
               + + Q+ A +A Q F  + L  SFRST  +L VVD+  +       GL       + 
Sbjct: 461  RAAQIVFQRHAEDASQMFHDLSLQHSFRSTPAVLDVVDRTIATLSAERFGLEAGEVRHVS 520

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                     G V LW+ V++    +   +++                +LA+ IA  I   
Sbjct: 521  ANRF----PGEVLLWKPVIAGLSDEAEGEEDW---------AADQERVLAQTIARQIRQW 567

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
            I    +  +   R + A DI++LVR+R +      L      + K++V G DR  L   L
Sbjct: 568  IDDGLMLESRG-RSVTAGDIMILVRRRSELAR---LIVARLYEEKVAVAGIDRLRLNAPL 623

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            A++DL+A  RF +  EDDL+   +L SPL  +++D++      R      +         
Sbjct: 624  AVRDLLAALRFAVQPEDDLNLAALLVSPLIGWTQDELMDRLIGRRVGLWQHLTQTLDG-- 681

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNF 535
                   +++ +  L+  A F +P+ +   IL G   GR++ + R G E  D ++E LN 
Sbjct: 682  ------ALLEPLRGLLGQADFTTPYRYLEAILSGPMDGRRRLVERLGAEAADPIEELLNA 735

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             L  E + Y SLQ  I   ++    I R  +A  + +R++TVH AKGL++P+V L D   
Sbjct: 736  ALDFENDDYPSLQRFIDWFDRGEVEIVRDAAAQGDMLRLLTVHGAKGLQAPIVILADACL 795

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
               +      +       +  G+PI  P+   R+  +  + +      + E+ RLLYV +
Sbjct: 796  DPDAGNRAGSL-------EWNGLPIIAPRKGERHGEIGRVAEEASAVERAEHWRLLYVAL 848

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA ++L++        + +    +WY  V  +  + +   +           W A    
Sbjct: 849  TRAEERLVVTGSLGPRAKGEVKPESWYAAVEGALISLDAEWEA-------DPLWGARRRW 901

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
              H    P   E  + +   +   P  L  P   +   P  L PS              +
Sbjct: 902  RGHETLPPKAAEADVAENGADHDEPDWLRKPAPAEARPPRPLAPSAAVEDDVPYPPPTPA 961

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
                  RG  +H+L + +  +P   R+     +  +           +++    R++ +P
Sbjct: 962  MRDAAERGRWLHRLFERLAEVPPDDRRARADKWLAQQGLG-DEARRHDVIEQALRVIGDP 1020

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
                    D+ +E  ++  +     + +I+G +D++ I +  + + ++KT    P  +E 
Sbjct: 1021 QYAALFGPDALAEAPIAAVV----GEAVIAGTVDRLRIGEDLVQLVDFKTGRISPLAVEE 1076

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            +P  H+ Q++ Y   L+  +P + +   L+Y S P++  +P   L +
Sbjct: 1077 VPLAHVRQMAAYAAALQVIFPGRRIEAGLLYTSAPRLIALPTELLAR 1123


>gi|298290318|ref|YP_003692257.1| double-strand break repair helicase AddA [Starkeya novella DSM 506]
 gi|296926829|gb|ADH87638.1| double-strand break repair helicase AddA [Starkeya novella DSM 506]
          Length = 1144

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 255/961 (26%), Positives = 399/961 (41%), Gaps = 47/961 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    GL    +   I   +                  +E G     +    L+ A    
Sbjct: 220  LAAAVGLDRPIASRDIEHRIIAEALIARGAWLGLGQALIEEGGNCARRGRSLLEAA--AA 277

Query: 61   CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
              E      +  FL +   P  +       I  K P     L   +D    +    +  +
Sbjct: 278  PDEGTADTYARVFLKEDGEPYGDSQFGAAPIRAKYP----LLLAERDRLAPLAQLLSAAR 333

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              + +   L L +     YE AK    VLDF DL+     LL     SAW+ YK+DQ I+
Sbjct: 334  ALERSRGVLILGREAARRYERAKAARGVLDFSDLVDAARRLLA-SGASAWVHYKLDQGID 392

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS--------PRTLFAVGDEKQSIYSFH 230
            H+L+DE QDTS  QWEVIR L  +FF G+   +         PRTLF VGDEKQSI+SF 
Sbjct: 393  HVLLDEAQDTSPEQWEVIRPLVAEFFAGEGARAEARYGAASLPRTLFVVGDEKQSIFSFQ 452

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+P+R    +R   +     G  F  IEL  SFRS   IL  VD VF      QGLS  
Sbjct: 453  GADPRRFDTVRRELMRLTGGVG--FEHIELRHSFRSAPGILAAVDTVFHAETAYQGLSAL 510

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
            +   + H +        V+LWE              ++W    D+   +     LAR+IA
Sbjct: 511  AEPPV-HEAIHAALPSLVELWEPEAPSEKVD----IDAWQRPLDAPAADDPKGRLARKIA 565

Query: 351  YTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I+  I      +     R  +  D L+LVR+R    L   + R LK + +++V G DR
Sbjct: 566  GHIAARIREGFPVTGRHGTRPARPGDFLILVRRRD--SLFEAIIRELK-EARVAVAGADR 622

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +  H+A+ DLMALG  +L+++D+L+  C LKSPLF   + D+ K+     E   + E 
Sbjct: 623  LTVAQHIAVMDLMALGDALLARDDELALACALKSPLFGLDDSDLMKL---APERAGLLED 679

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                       ++   + +  L   A+   P DF+  +LG ++GR   I+R G E  D L
Sbjct: 680  ALFARAGENPHWRAAAERLRRLRPEARRLRPFDFYARVLGRERGRAAMIARLGPEAADAL 739

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            DE L      E     SL   ++ L +     KR   A  +EVR+MTVH AKGLE+P V 
Sbjct: 740  DEMLALARSYENVEAPSLAGFLAFLRRGGAEAKRDMEAGRDEVRVMTVHGAKGLEAPYVI 799

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L DT S            +   L D     +  P  K     ++        + Q+EY R
Sbjct: 800  LADTTSG--PMTRRAAGLLRVELPDGRRAALHAPSKKGDTPAMARARAQGDAAQQDEYRR 857

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV +TRA   L++         +K     WYD+V  +       + ++   +      
Sbjct: 858  LLYVALTRAESALVLAGA---DGGRKRPADCWYDLVRGALE----PEAVEQPAAGFAGTV 910

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
              +  + H                 + ++   +  S    +      L PS         
Sbjct: 911  RRWRSAVHEEIIAAPAVAAIAAAPDEAERALARALSRPIEEPAARAALRPSASSLLSAAP 970

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                  +    +RG ++H+L+  + +LP  +R           A  +     + LL    
Sbjct: 971  ---EGPEALALHRGELLHRLMAALASLPPEERAAPGRRLLAA-AGDFEEAAREELLTEAL 1026

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
             +L  P +       S +EV + G++        +SGRID++++    I I ++KT   V
Sbjct: 1027 GVLAVPGLADLFGPGSLAEVPLVGELE---DGTPVSGRIDRLAVLGDRILIADFKTDRRV 1083

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
            P+E   +P  H+ Q+++Y ++L+  YP + +   L+Y + P    +  + L +    +++
Sbjct: 1084 PREASSLPPAHVRQVALYARLLRRLYPGRPIEARLVYTAGPLAHALGADVLERIVESVTS 1143

Query: 950  K 950
            +
Sbjct: 1144 Q 1144


>gi|170738831|ref|YP_001767486.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46]
 gi|168193105|gb|ACA15052.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46]
          Length = 1157

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 256/956 (26%), Positives = 446/956 (46%), Gaps = 49/956 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+   GL+ +E+   I   +        + +       + TG  T  K+A  L +A+  +
Sbjct: 223  LREALGLAPDEAVGTIEARMREGAPADWAGLAAQ----LRTGKATDEKRADALARAAAAE 278

Query: 61   CIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
              ++   L  + F   +         ++ T+ + +    ++  L   Q    ++R+R   
Sbjct: 279  EPQD-LPLYLAAFFKDEGEGDPYAPASLGTKAVPEA---VRRLLLDEQARLGRLRERLKA 334

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +  + T A  TLA  ++   E  K +   LDF+DLI  T DLL + D + W+ YK+D+ 
Sbjct: 335  ARAQERTAALFTLAAEIHRRVEAQKARLGALDFDDLIHKTLDLLTRVDSA-WVLYKLDRG 393

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP--RTLFAVGDEKQSIYSFHGAEP 234
            ++H+LIDE QDT+  QWE++R +TEDF  G+     P  RT FAVGD KQSIYSF GA P
Sbjct: 394  VDHVLIDEAQDTNPEQWEILRRITEDFCAGEGARRGPLPRTRFAVGDPKQSIYSFQGAAP 453

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS-EDSTT 293
            +     ++  ++ A  AG  F  + L LSFRS   +L  VD  F++ E+ +GLS  D   
Sbjct: 454  EEFETTRQAWRRAARGAGLAFEDVGLTLSFRSAKGVLRGVDATFALAEHYRGLSFGDGAI 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H + R+G  G V+LW       + + +    +W    D++   + A ++ARR+A  +
Sbjct: 514  GTVHETVRVGAPGQVELWPTEEPCEEPEPD----AWVQPVDAVEAGAPALVVARRVARAV 569

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +         +   R+ +  +IL+LVRKR  +     + R LK +  + V G DR  + 
Sbjct: 570  RHWTREG----DEHGRIWRPGEILILVRKR--SAAFEGVIRALKAE-DVPVAGQDRLDIA 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
             H+A+ DL+A GR  L  +DDL+  C LK+PL   ++DD+ ++  +R   E++   + + 
Sbjct: 623  AHIAVMDLVAAGRAALLPDDDLTLACALKTPLVGLTDDDLVRLAARRAPEESLAAALARH 682

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
            A  G          +     +AQ   P  F+  +LG   GR + ++R G E  D +D FL
Sbjct: 683  AGAGDPAALRGAAALATWRRLAQESGPFGFYADLLGPLGGRARLVARLGGEAGDAIDVFL 742

Query: 534  NFTLRNEQN-SYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                + EQ     SL   +S        +    T+KR   +  +EVR+MTVH AKGLE+ 
Sbjct: 743  TAAAQAEQGADAPSLTGFLSRYAPSGGRDAGGHTVKRDLESARDEVRVMTVHGAKGLEAG 802

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLND--DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            ++ L+D    +  +        +       D  +P+W P         +   + L +  +
Sbjct: 803  LLVLIDGCEPLGRNDPPLLPVPVRGAGGVADGTVPVWSPSKGHDCPAGAAAREALHERAR 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            +E+NRLLYV MTRA D+L+I  +     E      +W +MV            +     +
Sbjct: 863  QEHNRLLYVAMTRAKDRLVIAPYRGRDRETP---ESWCEMVRRG--------LVAAFGGV 911

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
             + E       T            T        + P  LF P+  +      L PS +  
Sbjct: 912  ERAEMPYGPAETWRHGAALPAAPATAVPPAPPGERPDWLFRPVAPEAEPLPPLRPSGLGA 971

Query: 765  KGKTNLESLLS-DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
              +       S D     RG++IH LL+ +  L   +R     ++    A   PA E + 
Sbjct: 972  ADEPRRSQPRSGDPAARRRGVLIHALLEHLPALAPERRAAAARAFVAARAPGLPAAEREA 1031

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
            L  S+ RLL +P ++      + +EV+++G ++    +  + GRID+++++++ +++ ++
Sbjct: 1032 LATSVLRLLADPDLSVLFGPLARAEVALAGTVSLGGVEWPVHGRIDRLAVTEEAVWLCDF 1091

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            KT    P E   +P    AQ+++Y  +L   +P+++++ LL++ + P +  +   +
Sbjct: 1092 KTGR-PPAEGAPVPGGMAAQVALYAALLARIHPDRAVIPLLVWTAGPVIRRLSGAE 1146


>gi|148260455|ref|YP_001234582.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5]
 gi|146402136|gb|ABQ30663.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5]
          Length = 1157

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/934 (26%), Positives = 420/934 (44%), Gaps = 35/934 (3%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF--SLLSSFFLTQKFT 79
             +  F   +I   +S+  +  +    +KA  L      +         +  S F T K  
Sbjct: 236  AIVEFDDREIRGALSIIKDRSSTKACEKAGELLSWLNLETEARLACQDIWISGFFTGKGD 295

Query: 80   PQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
            P+   +++++ ++ + P LK  ++  Q   ++ +DR    ++   + A   L   + A  
Sbjct: 296  PRAMSSLVSKGLDAEEPTLKATIEAEQGRLLRAKDRLAARRLADLSAALAQLVLPIQAAE 355

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            + AK+ +   D+ DLI     LL     + W+ YK+D  I+HIL+DEVQD +  QWEVI 
Sbjct: 356  QSAKQGSARFDYADLIARAAQLLVDPGAA-WVLYKLDGGIDHILLDEVQDIAPAQWEVID 414

Query: 198  SLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            ++  +FF G      + RT+FAVGD KQSIYSF GA+       +     R + AG ++ 
Sbjct: 415  AIVAEFFAGTGARDGTARTVFAVGDRKQSIYSFQGADLASFDAWRAGIGARVSAAGARWH 474

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L  SFRSTA IL++VDKVF       G+       + H +SR GQ G+V LW  V  
Sbjct: 475  EGSLATSFRSTAPILSLVDKVFERGPARSGVVM-PDEVLAHGASRAGQAGSVTLWPLVP- 532

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
               +  NP+  +W        Q S+   LAR +A  I+  +   T+    + R +   DI
Sbjct: 533  ---ADPNPELAAWAPAETYAEQASARRRLARSVAGWIAANV--GTMRLESRGRTLAPGDI 587

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            L+LVR+R +             +  + V G DR +LT+  A+ DL+AL R +L  EDD+ 
Sbjct: 588  LILVRQRNE---FGVALTRALKEAGVKVAGLDRMVLTETRAVADLIALARAVLLPEDDVE 644

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
               +L SPL   S++++  +   R    T+ + +   A+  +  F      I E    A 
Sbjct: 645  LATVLASPLGGLSDEELMNLALDRK--GTLRDALFTRADEHV-AFAAARDLIAEAQARAD 701

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
            F +P+ FF  +LG   GR + ++R G E  + LDE L   L    +   SLQ  ++ L+ 
Sbjct: 702  FVTPYRFFAEVLGPMGGRARLLARLGPEAAEPLDELLATALDYGTHEAPSLQGFLAALDA 761

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                +KR   A  + VR+MTVH AKGL++P+V L DT  Q         ++ + +     
Sbjct: 762  AAAEVKREAEAAGDSVRLMTVHGAKGLQAPLVILPDTTGQRGKEARDL-LYWIDAPQGGG 820

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
             +PI+ P++  R+  V   +        EEYNRLLYV +TRA D LI+C     + + + 
Sbjct: 821  EVPIFCPRADMRSAAVRQALASASDRGFEEYNRLLYVALTRAEDHLIVCGA---ATKSRL 877

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
             +  WY+ V   F   + V +I+    ++          +  P+        T   L   
Sbjct: 878  PETCWYESVRAGFERLDGVAEIEAEPPLDGTILYYAAPQSAPPDRLAAISTATAAPLPGW 937

Query: 737  QKIPKKLFSPIKNDIN-EPYILNPSTIDTKGKTNLES-------LLSDNQTFNRGLIIHK 788
                    +    +       L PS       T L +                RG +IH 
Sbjct: 938  IGPETGWRAAPPPEPKQRIDRLVPSRSAEGESTGLAAASPLAGRGTGREAAMARGRLIHA 997

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
            LLQ +  LP   R+     Y  +        E  +++ ++  +L++P +T      S +E
Sbjct: 998  LLQHLPDLPPGDRREAARRYLAQPGHRLGDVEQTDVIDAVFDVLDHPDLTALFGPASRAE 1057

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
              ++G +   +   +    ID++++    + I +YKT    P +   IP  + AQL+ Y 
Sbjct: 1058 APIAGIVGGVEIGGL----IDRLAVLPDRVLIADYKTDRQPPADPAGIPEAYAAQLAAYA 1113

Query: 909  KILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
             +L + YP + +  +L++ +   V  +P  +L +
Sbjct: 1114 AVLAEIYPGRRIDAVLVWTARGHVMPVPAARLAR 1147


>gi|326403648|ref|YP_004283730.1| double-strand break repair helicase AddA [Acidiphilium multivorum
            AIU301]
 gi|325050510|dbj|BAJ80848.1| double-strand break repair helicase AddA [Acidiphilium multivorum
            AIU301]
          Length = 1157

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 250/934 (26%), Positives = 420/934 (44%), Gaps = 35/934 (3%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF--SLLSSFFLTQKFT 79
             +  F   +I   +S+  +  +    +KA  L      +         +  S F T K  
Sbjct: 236  AIVEFDDREIRGALSIIKDRSSTKACEKAGELLSWLNLETEARLACQDIWISGFFTGKGD 295

Query: 80   PQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
            P+   +++++ ++ + P LK  ++  Q   ++ +DR    ++   + A   L   + A  
Sbjct: 296  PRAMSSLVSKGLDAEEPTLKATIEAEQGRLLRAKDRLAARRLADLSAALAQLVLPIQAAE 355

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            + AK+ +   D+ DLI    +LL     + W+ YK+D  I+HIL+DEVQD +  QWEVI 
Sbjct: 356  QSAKQGSARFDYADLIARAAELLVDPGAA-WVLYKLDGGIDHILLDEVQDIAPAQWEVID 414

Query: 198  SLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            ++  +FF G      + RT+FAVGD KQSIYSF GA+       +     R + AG ++ 
Sbjct: 415  AIVAEFFAGTGARDGTARTVFAVGDRKQSIYSFQGADLASFDAWRAGIGARVSAAGARWH 474

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L  SFRSTA IL++VDKVF       G+       + H +SR GQ G+V LW  V  
Sbjct: 475  EGSLATSFRSTAPILSLVDKVFERGPARSGVVM-PDEVLAHGASRAGQAGSVTLWPLVP- 532

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
               +  +P+  +W        Q S+   LAR +A  I+  +   T+    + RV+   DI
Sbjct: 533  ---ADPDPELAAWAPAETYAEQASARRRLARSVAGWIAANV--GTMRLESRGRVLAPGDI 587

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            L+LVR+R +             +  + V G DR +LT+  A+ DL+AL R +L  EDD+ 
Sbjct: 588  LILVRQRNE---FGVALTRALKEAGVKVAGLDRMVLTETRAVADLIALARAVLLPEDDVE 644

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
               +L SPL   S++++  +   R  T     + +   +   +  +     I E    A 
Sbjct: 645  LATVLASPLGGLSDEELMNLALDRKGTLRDALFTRADEHAAFAAAR---DLIAEAQARAD 701

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
            F +P+ FF  +LG   GR + ++R G E  + LDE L   L    +   SLQ  ++ L+ 
Sbjct: 702  FVTPYRFFAEVLGPMGGRARLLARLGPEAAEPLDELLATALDYGTHEAPSLQGFLAALDA 761

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                +KR   A  + VR+MTVH AKGL++P+V L DT  Q         ++ + +     
Sbjct: 762  AAAEVKREAEAAGDSVRLMTVHGAKGLQAPLVILPDTTGQRGKEARDL-LYWIDAPQGGG 820

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
             +PI+ P++  R+  V   +        EEYNRLLYV +TRA D LI+C     + + + 
Sbjct: 821  EVPIFCPRADMRSAAVRQALASASDRGFEEYNRLLYVALTRAEDHLIVCGA---ATKSRL 877

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
             +  WY+ V   F   + V +I+    ++          +  P+        T   L   
Sbjct: 878  PETCWYESVRAGFERLDGVAEIEAEPPLDGTMLYYAAPQSAPPDRLAAISTATAAPLPGW 937

Query: 737  QKIPKKLFSPIKNDIN-EPYILNPSTIDTKGKTNLES-------LLSDNQTFNRGLIIHK 788
                    +    +       L PS       T L +                RG +IH 
Sbjct: 938  IGPETGWRAAPPPEPKQRIDRLVPSRSAEGESTGLAAASPLAGRGTGREAAMARGRLIHA 997

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
            LLQ +  LP   R+     Y  +        E  +++ ++  +L++P +T      S +E
Sbjct: 998  LLQHLPDLPPGDRREAARRYLAQPGHRLGDVEQTDVIDAVFGVLDHPDLTALFGPASRAE 1057

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
              ++G +   +   +    ID++++    + I +YKT    P +   IP  + AQL+ Y 
Sbjct: 1058 APIAGIVGGVEIGGL----IDRLAVLPDRVLIADYKTDRQPPADPAGIPEAYAAQLAAYA 1113

Query: 909  KILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
             +L + YP + +  +L++ +   V  +P  +L +
Sbjct: 1114 AVLAEIYPGRRIDAVLVWTARGHVMPVPAARLAR 1147


>gi|190570633|ref|YP_001974991.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
 gi|213019116|ref|ZP_03334923.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
            quinquefasciatus JHB]
 gi|190356905|emb|CAQ54283.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
 gi|212995225|gb|EEB55866.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex
            quinquefasciatus JHB]
          Length = 1089

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 241/875 (27%), Positives = 429/875 (49%), Gaps = 64/875 (7%)

Query: 62   IEERFSLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             + +   L+  FL  +   +K+I   IT+   +K  D+++ ++  Q+         N+Y+
Sbjct: 271  DDNKIENLAKVFLKSESYEKKSISSIITKGALEKFEDVEQMIESIQNALFTHVKDINSYQ 330

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +F  T + L++ K     Y   K KN +LD++D+I    +LL       WI + +DQ+I+
Sbjct: 331  IFGRTSSLLSIFKVYVDLYNSEKSKNALLDYDDIINLATNLLSNPGYKDWILFNLDQKID 390

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HIL+DE QD S+ QW++I +L  +FF G +     RTLF VGD KQSIY F GA P    
Sbjct: 391  HILVDEAQDNSISQWKIITNLCNEFFTGGD---EKRTLFVVGDVKQSIYRFQGANPHLFN 447

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              ++    +    G+ +   +L  SFRST ++L +V+++F+     +     +   I+H 
Sbjct: 448  YMQQYFHTKTG--GRDWVSCQLEKSFRSTPEVLMLVERIFNN---FREEISFNDNKIKHI 502

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
              R    G +++W  +    + +    Q   T   D + ++    +LA+ IA  I N + 
Sbjct: 503  PYRENDQGYIEIWPLLPGYEEEEQQALQIHLTQRKDYVVKD---RLLAQAIAQRIHNWLN 559

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
               I    K R I+ +DI++LVR      ++            + V+G D F + D++A+
Sbjct: 560  EGRIL-VAKDRHIEPRDIMILVR---QRNVLVDYIISELKKVNVPVIGRDYFRIMDYIAV 615

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+AL  F+L Q +DL+   +LKSPLFNF+EDD+F I   R E  +++E +Q +     
Sbjct: 616  QDLIALAEFLLLQANDLALANVLKSPLFNFTEDDLFNIAYNRKEQ-SLWEKLQDYQEIIS 674

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++       ++ LI+++Q  SP   FT IL    GR++F +R G E  ++LDEF+N  L+
Sbjct: 675  NE-------LNYLINLSQTKSPLTLFTHILRT--GRKKFAARLGLECFEILDEFMNLVLQ 725

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E     SLQ  +  +++  P IK    +  N VRIMT+H +KGL++P+VFLVDT +   
Sbjct: 726  FEH---PSLQAFVQWIKENNPEIKNDMQSKLNAVRIMTIHKSKGLQAPIVFLVDTNTVPR 782

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            + ++I        L D    P W  ++   N   + + +  K     EY RLLYV +TRA
Sbjct: 783  NSENI--------LFDATEAPFWCGKN--SNAYCNQVKREKKLEDYNEYLRLLYVALTRA 832

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             D+L I        ++   + +WYD+V       ER K       I K++      + ++
Sbjct: 833  EDELYILG------KEPVQKGSWYDLVIQYGALYERKKLYLQP--IFKEKVEVLCMNANY 884

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            P          +  +             +  +  E   ++ + +  +     +  +    
Sbjct: 885  PSIYKKRDYFDVPVI-SPPSNLSMSLQHVTLEPGEKKPVSSTGMTDENAGMTKRSIGTTD 943

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
            ++ RGLIIH +LQ +  + + +RKN++  Y      +  +++   +   I     N    
Sbjct: 944  SYARGLIIHSILQYMPKIEKDRRKNWVRKYLD---SINTSEDKDEIYSKILTF--NEKYD 998

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP-QEIEHIP 897
                 +  SE+ +SG I+   K +++  R+D++ I++    I +YK+HH+V       I 
Sbjct: 999  YLFDLEGKSEIPLSGTID--GKPVLV--RLDRLCITEDKAIIIDYKSHHNVSISSSNEIK 1054

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
                 Q+ IY+ ++++ YP+K + C++I++ +  +
Sbjct: 1055 ----KQMLIYKTLVQEVYPDKQVECVVIWMEDLTL 1085


>gi|148555593|ref|YP_001263175.1| double-strand break repair helicase AddA [Sphingomonas wittichii RW1]
 gi|148500783|gb|ABQ69037.1| Double-strand break repair helicase AddA [Sphingomonas wittichii RW1]
          Length = 1142

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 222/946 (23%), Positives = 397/946 (41%), Gaps = 46/946 (4%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L++ F + L +  E I           ++        +   G  T L+ A TL       
Sbjct: 223  LRHAFDVPLGDVEEAIEA---ACDGLDLAAFEAVARANATWGTATGLRDADTLAAFLAAG 279

Query: 61   CIEERFSLLSSFF--LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                   L    F  LT+ F P+K      + K      ++  +  D+  ++        
Sbjct: 280  PAARAAMLEEVLFVVLTKSFEPRK--YAAGLLKADAGYPDQCVRLADQIGRLLGWRRRAA 337

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            +  +  A L   +     Y EAK+   ++DF+DLI  T  LL +  +  W+RYK+DQ+ +
Sbjct: 338  LATAIGAGLRAGQAYAQAYAEAKRAAGLVDFDDLIRATVRLLDEPGMGDWVRYKLDQQTD 397

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL+DE QDT+  QW ++  L E+FFVG       PRT+F VGD KQ+I+ F G +P   
Sbjct: 398  HILVDEAQDTNAAQWAIVGRLAEEFFVGAGARGGAPRTIFTVGDFKQAIFGFQGTDPVEF 457

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
             R +     +A    ++F  + L  SFRS   +L +VD++ +   +         T    
Sbjct: 458  ERARLGFAIKALQVDREFLDLSLDRSFRSAPAVLELVDRLIADLGHE---EMGLFTPAER 514

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             ++     G V LW+ +  +     + ++             + A  LAR++   I   +
Sbjct: 515  HAAHHAMPGRVTLWKPLSIEEAMDDDGEEGFIDDA-----TRAYAGRLARQVRSWIDERL 569

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                     KKR I+ +DIL+LVR+R D   +  L     +  K+ V G DR  LT  L 
Sbjct: 570  WLG-----SKKRPIRPEDILILVRRRAD---LASLIVARLHAEKVPVAGVDRLRLTAPLV 621

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            +KDL+A  RF + +EDDLS   +L SPLF +S+++++++   R     + + ++   +  
Sbjct: 622  VKDLLAAVRFAVQREDDLSLAALLVSPLFGWSQEELYRVGFGRR--GPLVDAVRAKGD-- 677

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                      +  ++  A F +P+ F   +L G   GR++ + R G+E  D +DE L   
Sbjct: 678  ----ADTNAALDAILARADFTTPYRFLEHLLTGPLDGRRKLLRRLGDEARDPIDELLGAA 733

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            L+ E  + ++LQ  +   ++    I R  SA  + VR+MTVH +KGLE+P+V L D  + 
Sbjct: 734  LQFEGTATATLQRFLDWFDRGDVEITRDPSAPLDAVRVMTVHGSKGLEAPLVILADATAD 793

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                    +            +P+  P+       +    + L K  ++E+ RLLYV +T
Sbjct: 794  --PDLSPDRRLDWAIEEGAEPVPVLRPRKAEMVEALRKDAEALAKRERQEHWRLLYVALT 851

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA + L+I               +WY  +  +               +    W+      
Sbjct: 852  RAQEHLVIGGTLGVRARGVPPASSWYQAIDQAMAGLGCPP-------VEDPLWVEARHYH 904

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                 T        ++       P  L  P   +   P  L PS++      +     + 
Sbjct: 905  GSVAATGTTAPARPRRGAPVLAEPGWLRRPAPPEARPPRPLAPSSLGLDDVPDPPPSAAL 964

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                 RG ++H L + +  +   +R++    +   +A +  A     L     R++ +P 
Sbjct: 965  RAAARRGTLLHALFERLPAIDPDRRRDAALRWLLGSAGVEEAGIAGALADDACRVIADPR 1024

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                   D+ +       +       ++SG +D++ ++   I + ++KT    P ++  +
Sbjct: 1025 FAAIFGADALA----EAPVAAVVAGEVVSGTVDRLLVAADRILVVDFKTGRRAPADLAAV 1080

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            P  H+ Q+S Y   L   +P + +   L+Y + P +  +P   L+ 
Sbjct: 1081 PDHHLRQMSAYAAALGVIFPGRPVAAALLYTAGPTLIELPAAVLDA 1126


>gi|42520239|ref|NP_966154.1| UvrD/Rep/AddA family helicase [Wolbachia endosymbiont of Drosophila
            melanogaster]
 gi|42409977|gb|AAS14088.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila
            melanogaster]
          Length = 1089

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 249/926 (26%), Positives = 442/926 (47%), Gaps = 82/926 (8%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------QQASQTQCIEERF----- 66
             ++  L    +  + +   +  E G+      ++ L          + +    R+     
Sbjct: 225  DEIHDLQSETIEHVERLAEILSE-GSKRDQSYSEILYSTVIPAGIQKKRTSVTRWNDTKV 283

Query: 67   SLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              L+  FL  +   +K+I    T+ I +K  D ++ ++  Q+         N+Y++FK T
Sbjct: 284  ENLAKVFLKSESHEKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQIFKRT 343

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
             + L + K     Y   K KN +LD+ D+I    +LL   +   WI + +DQ+I+HIL+D
Sbjct: 344  SSLLGVFKVYVDLYNSEKSKNALLDYNDIINLATNLLSNPNYKDWILFNLDQKIDHILVD 403

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QD S+ QW++I +L ++FF G   +   RTLF VGD KQSIY F GA P      ++ 
Sbjct: 404  EAQDNSISQWKIITNLCDEFFAG---NDEKRTLFVVGDVKQSIYRFQGANPHLFNYMQQY 460

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
               +    G+ +   +L  SFRST ++L +VD++F+     +     +   I+H   R  
Sbjct: 461  FHTKTG--GRDWISCQLEKSFRSTPEVLMLVDRIFNN---FRAEISFNDNEIKHVPHREN 515

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G +++W  +  + + +    Q   T   + +    +  +LA+ IA  I N +    I 
Sbjct: 516  DQGYIEIWPALPRRKEKEQQALQIPLTCRENYI---IADRLLAQTIANRIHNWLNEGRIL 572

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
               K R I+ +DI++LVR      ++            + VVG D F + D++A++DL+A
Sbjct: 573  -VAKDRHIEPRDIMILVR---QRNVLVDYIISELKKANVPVVGRDYFRIMDYIAVQDLIA 628

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            L  F+L Q +DL+    LKSPLFNF+EDD+F I   R E  +++E IQ ++    S+   
Sbjct: 629  LAEFLLLQANDLALANALKSPLFNFTEDDLFNIAYDRKEH-SLWERIQDYSVVIYSE--- 684

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
                ++ LI++++  SP   FT IL    G+++F +R G E  +VLDEF+N  L+ E   
Sbjct: 685  ----LNYLINLSRIESPLALFTHILRT--GKKKFAARLGLECFEVLDEFMNLVLQFEN-- 736

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
              SLQ  +  +++  P IK    +  N VRIMT+H +KGL++P+VFLVDT +   + + I
Sbjct: 737  -PSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRNSESI 795

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                    + D   +P W  ++   N     + +  K     EY RLLYV +TRA D+L 
Sbjct: 796  --------IFDGTEVPFWCGKNN--NAYCDQVKREKKLEDYNEYLRLLYVALTRAEDELY 845

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            I        ++   + +WYD++  + + +   KK +    I K++      + ++P    
Sbjct: 846  ILS------KEPVQKGSWYDLI--TKYGEPYEKKQRDLQPIFKEKVEVLCVNANYPYIYK 897

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
                  +  +     +     S      ++   L  S  +      + +    +    RG
Sbjct: 898  KRDYFDVPVISLPPALAHSSVS------SQRVTLESSEKEGAEWIPVSATWMTDGYA-RG 950

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
            LIIH +LQ +  + + +RKN++  Y         +++   +   I     N         
Sbjct: 951  LIIHSILQYMPKIEKERRKNWVRKYLDN-----ISEDKDEIYSKILAF--NEKYGYLFDL 1003

Query: 844  DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            +  SE+++SG I+   K +++  R+D++ I+Q    I +YK+H +V      +      Q
Sbjct: 1004 EGKSEITLSGTID--GKSVLV--RLDRLCITQDKAIIIDYKSHRNVSVS---LLNEIKKQ 1056

Query: 904  LSIYEKILKDSYPNKSLVCLLIYVSE 929
            + IY+ ++++ YPNK + C++I+V +
Sbjct: 1057 MLIYKTLVQEIYPNKQVECVVIWVED 1082


>gi|58584432|ref|YP_198005.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB [Wolbachia
            endosymbiont strain TRS of Brugia malayi]
 gi|58418748|gb|AAW70763.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB [Wolbachia
            endosymbiont strain TRS of Brugia malayi]
          Length = 1119

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 260/936 (27%), Positives = 447/936 (47%), Gaps = 75/936 (8%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
               E  E +  ++      +  + +K + L+  +       + Q L   S T+  +    
Sbjct: 238  EATEQIERL-AEILSKGSKRDRNYSKMLDLTSSSFIQVADTRIQKLDS-SATRWNDISIE 295

Query: 68   LLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
             L   FL  +   +K+I   IT+   +K P  ++ ++  Q+         N+Y++FK T 
Sbjct: 296  NLVKVFLKSESCEKKSISSIITKSTLEKFPGAEQVIENIQNAVFTHVRDINSYQIFKRTS 355

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            + L + K     Y   K KN +LD+ D+I    +LL   D   W+ + +DQ+I+HIL+DE
Sbjct: 356  SFLDIFKVYIDLYNSEKSKNALLDYNDIIDLATNLLSNPDYKNWVLFNLDQKIDHILVDE 415

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QD S+ QW++I +L ++FF+    +   RTLF VGD KQSIY F GA P      ++  
Sbjct: 416  AQDNSISQWKIIANLCDEFFI---RNDEKRTLFVVGDVKQSIYRFQGANPHLFNCMQQYF 472

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
              ++   G+ +   +L  SFRST + LT+VD++F+     +       + I+H   R   
Sbjct: 473  HTKSG--GKDWISCQLEKSFRSTPETLTLVDRLFNN---FREEISFVDSEIKHIPYREND 527

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             G V++W  +    + +    Q       D +  +    +LA+ IA+ I N +    I  
Sbjct: 528  QGYVEIWPLLPRCKEEEQQALQIHLMHRKDYIITD---RLLAQAIAHKIHNWLNEGRIL- 583

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
              K R I+ +DI++LVR+R    L+ ++   LK    I VVG D F + D++A++DL+AL
Sbjct: 584  VAKNRHIEPRDIMILVRQRN--MLVDYVISELK-KANIPVVGRDYFRIMDYIAVQDLIAL 640

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
              F+L   +DL+    LKSPLFNF+EDD+F I   R E  +++E +Q ++       + +
Sbjct: 641  TEFLLLPTNDLALANALKSPLFNFTEDDLFNIAYDRKEQ-SLWERLQNYS-------EDI 692

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
               +++LI+++   SP   FT IL    G+++F +R G E  +VLDEF+N  L+ E    
Sbjct: 693  YSKLNDLINLSHIESPLTLFTHILRT--GKKKFAARLGLECFEVLDEFMNLVLQFEN--- 747

Query: 545  SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             SLQ  +  +++  P IK    +  N VRIMT+H +KGL++P+VFLVDT +   + + I 
Sbjct: 748  PSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPKNSESI- 806

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                   + D  G P    ++   N     + +  K     EY RLLYV +TRA D+L I
Sbjct: 807  -------VLDAMGAPFLCGKNN--NAYCDQVKREKKLEDYNEYLRLLYVALTRAEDELYI 857

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                    ++   + +WYD++  + + +   KK    + I K++      + ++P     
Sbjct: 858  LG------KEPVQKGSWYDII--TKYGEPYEKKYMELHQIFKEKVEVLCVNANYPYIYKK 909

Query: 725  EREETIKQLMDEQKIPKKL-FSPIKNDINEPYI---------LNPSTIDTKGKTNLESLL 774
                 I  ++    +      SP  +                 +P         + +   
Sbjct: 910  RDYFNIPAVLPPPNLSILFQHSPSPSQYPLLSPQCFDTGIHSFSPLDSSVTHWDDKKRNT 969

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
                 + RGLIIH +LQ +  + + +RKN+I  Y      +   K    +   I     N
Sbjct: 970  WMTDGYTRGLIIHSILQYMPKIEKDRRKNWIGKYLDN---INIRKNKDEIYRKILAF--N 1024

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP-QEI 893
                     D  SE+++SG IN   K +++  R+D++ I+Q    I +YK+H +V    +
Sbjct: 1025 EKYDYLFDLDGKSEITLSGTIN--GKPVLV--RLDKLCITQDKAIIIDYKSHRNVSVSSL 1080

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
              I      Q+ IY+ ++++  PNK + C++I+V +
Sbjct: 1081 NEIK----KQMLIYKTLVQEICPNKQVECMVIWVED 1112


>gi|225630221|ref|YP_002727012.1| helicase, UvrD/Rep family [Wolbachia sp. wRi]
 gi|225592202|gb|ACN95221.1| helicase, UvrD/Rep family [Wolbachia sp. wRi]
          Length = 1099

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 241/873 (27%), Positives = 424/873 (48%), Gaps = 68/873 (7%)

Query: 63   EERFSLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
            + +   L+  FL  +   +K+I    T+ I +K  D ++ ++  Q+         N+Y++
Sbjct: 288  DTKIENLAKVFLKSESHEKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQI 347

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            FK T + L + K     Y   K KN +LD+ D+I    +LL   D   W+ + +DQ+I+H
Sbjct: 348  FKRTSSLLGVFKVYVDLYNSEKSKNALLDYNDIIDLATNLLSDPDHKDWVLFNLDQKIDH 407

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            IL+DE QD S+ QW++I +L ++FF G   +   RTLF VGD KQSIY F GA P     
Sbjct: 408  ILVDEAQDNSISQWKIITNLCDEFFAG---NDEKRTLFVVGDVKQSIYRFQGANPHLFNY 464

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             ++    +    G+ +   +L  SFRST ++L +VD++F+     +     +   I+H  
Sbjct: 465  MQQYFHTKTG--GRDWISCQLEKSFRSTPEVLMLVDRIFNN---FRAEISFNDNEIKHVP 519

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             R    G +++W  +  + + +    Q   T          +  +LA+ IA  I N +  
Sbjct: 520  HRENDQGYIEIWPALPRRKEKEQRALQIPLTC---KEGYTIADRLLAQTIANRIHNWLNE 576

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              I    K R I+ +DI++LVR      ++            + VVG D F + D++A++
Sbjct: 577  GRIL-VAKDRHIEPRDIMILVR---QRNVLVDYIISELKKANVPVVGRDYFRIMDYIAVQ 632

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            DL+AL  F+L Q +DL+    LKSPLFNF+EDD+F I   R E  +++E IQ ++    S
Sbjct: 633  DLIALAEFLLLQANDLALANALKSPLFNFTEDDLFNIAYDRKEH-SLWERIQDYSVVIYS 691

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            +       ++ LI++++  SP   FT IL    G+++F +R G E  +VLDEF+N  L+ 
Sbjct: 692  E-------LNYLINLSRTESPLALFTHILRT--GKKKFAARLGLECFEVLDEFMNLVLQF 742

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            E     SLQ  +  +++  P IK    +  N VRIMT+H +KGL++P+VFLVDT +   +
Sbjct: 743  EN---PSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRN 799

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             + I        + D    P W  ++   N     + +  K     EY RLLYV +TRA 
Sbjct: 800  SESI--------IFDGTEAPFWCGKNN--NAYCDQVKREKKLEDYNEYLRLLYVALTRAE 849

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            D+L I        ++   + +WYD++  + + +   KK +    I K++      + ++P
Sbjct: 850  DELYILS------KEPVQKGSWYDLI--TKYGEPYEKKQRGLRPIFKEKVEVLCVNANYP 901

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                      +  +     +     S      ++   L  S  +      + +    +  
Sbjct: 902  YIYKKRDYFDVPVISLPPALAHSSVS------SQRVTLESSEKEGAEWIPVSATWMTDGY 955

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
              RGLIIH +LQ +  + + +RKN++  Y      +  +++   +   I     N     
Sbjct: 956  A-RGLIIHSILQYMPKIEKERRKNWVRKYLDN---INISEDKDEIYSKILAF--NEKYGY 1009

Query: 840  AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
                +  SE+++SG I+   + +++  R+D++ I+Q    I +YK+H +V      +   
Sbjct: 1010 LFDLEGKSEITLSGIID--GEPVLV--RLDRLCITQDKAIIIDYKSHRNVSVS---LLNE 1062

Query: 900  HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
               Q+  Y+ ++++ YPNK +  ++I+V +  +
Sbjct: 1063 IKKQMLTYKTLVQEIYPNKQVEFMVIWVEDLTL 1095


>gi|148284261|ref|YP_001248351.1| ATP-dependent DNA helicase UvrD [Orientia tsutsugamushi str. Boryong]
 gi|146739700|emb|CAM79510.1| ATP-dependent helicase, UvrD/rep/AddA family [Orientia tsutsugamushi
            str. Boryong]
          Length = 1154

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 237/914 (25%), Positives = 416/914 (45%), Gaps = 57/914 (6%)

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                   ++   + + FLT     ++N+I+Q+   K PDL E     Q++ +++ DR NT
Sbjct: 261  LDYSSFIQQLDEIMALFLTNNGLKRRNLISQDFKNKYPDLSEYFSLLQEDILQVHDRLNT 320

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             K+ +ST     ++  +   Y++ K  +  LD++DLI  T+ LL+      WI YK+DQ 
Sbjct: 321  LKIIESTYHLYRISTAVLHFYQQYKLSHNYLDYDDLIRYTHKLLRNTSSKDWILYKLDQS 380

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            I+HIL+DE QD SL QW ++ +L  D   G    ++  T F VGD+KQ+IYSF GA+ + 
Sbjct: 381  IDHILVDEAQDNSLEQWNIVLTLLNDLLAG-GNKNNNSTFFVVGDKKQAIYSFQGADVEV 439

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                 R        A + F  + L +S+RST ++L VV  VF+           S   ++
Sbjct: 440  FNTLSRELNSSFNVAKKPFKSVSLDVSYRSTHEVLNVVHAVFTDISLQMPELFSSDDLVK 499

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES--SASILARRIAYTIS 354
             + +R    G VQLW+ VV                  D+  Q S  S+ +LA++IA+ ++
Sbjct: 500  LKCNREADHGLVQLWDIVVENKSKDGKEVFWPIADALDNGIQTSMQSSYMLAKQIAHYVN 559

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
              I +  +  +  K+ IQ  D L+LVR+R +                + V G DR  L D
Sbjct: 560  LQILSKRVLPS-TKQAIQCSDFLILVRRRNE---FVKQLVSELRKLNLKVSGIDRVSLQD 615

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
            HL+I DL+AL +F++  +DDL+  C+LKSP  + +E+DI+ +C  +   +++++++    
Sbjct: 616  HLSIIDLIALAKFVIDPDDDLNLACLLKSPFIDCAEEDIYFLCRSKKHKDSIWQFLTTIE 675

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
               +  +Q ++  +H+ I +    +P  FF L++     RQ  I+   ++  D++DEFL 
Sbjct: 676  KDNLY-YQSIVSKLHKFIVLYCSSTPDYFFHLVIEVLNYRQVLININIDDGNDIIDEFLK 734

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                  ++  +SL+E I   +     IKR      + + IMTVH AKGL++P+V L DT 
Sbjct: 735  VVEYFFKSFSNSLREFIIWFDSNNIEIKRDVDT-QDCINIMTVHAAKGLQAPIVILPDTT 793

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                       +     L ++ G  +W  QSK  +N +      LK +  +EY RLLYV 
Sbjct: 794  --------TLPISPSGILWNNDGNMLWSIQSKHCDNYLKTQAGILKHADYQEYLRLLYVA 845

Query: 655  MTRASDQLIICKHSNTSN--------------EKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            MTRA D+LIIC ++  +                K          +  +  N     +++ 
Sbjct: 846  MTRAEDELIICGYNTAATLPQRCWYNIIKESMSKIPGISRRECNLDFTCINKVVYNRVES 905

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI---KNDINEPYIL 757
            ++ +      +++       +  LE +  I+ +   +   K L   I   + ++N    L
Sbjct: 906  SSELLTQIINSFQEEAASKYSNLLECKSHIQDISQAEHDYKSLVKQIFDFRFELNRILEL 965

Query: 758  NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
               +++    ++  S L      N G++ HK+L+ I           I  +   +     
Sbjct: 966  KFLSVNLISLSSF-SPLEGEHGINYGVVCHKILEEITKNRN------IKLFLNTSYVKLL 1018

Query: 818  AKEYKNLLLSITRLL-ENPMMTTAMSC-DSYSEV--------------SVSGKINCPKKD 861
              + KN +  I  +L  N      ++  +  SEV              S +         
Sbjct: 1019 TIKQKNKVEEILNVLIANQEFNYLLNSYELKSEVNLGIMCLSDNSDIRSNNDAFYIDDTK 1078

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
            + +  RID ++I   +I I +YKT   VP+    +  +++ QL  Y  I+K  YP  ++ 
Sbjct: 1079 VFVFKRIDLLAIKNNHIVIVDYKTDFLVPETQLEVQSSYLKQLKSYHDIIKLIYPMHTVN 1138

Query: 922  CLLIYVSEPKVFII 935
              ++++       I
Sbjct: 1139 TKILWLENVCFMNI 1152


>gi|189182928|ref|YP_001936713.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi str.
            Ikeda]
 gi|189179699|dbj|BAG39479.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi str.
            Ikeda]
          Length = 1155

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 237/918 (25%), Positives = 421/918 (45%), Gaps = 64/918 (6%)

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                   +R   + + FLT     ++N+I+Q+   K  DL E     Q++ +++ DR NT
Sbjct: 261  LDYSSFIQRLDEIMALFLTNNGLKRRNLISQDFKNKYHDLSEYFSLLQEDILQVHDRLNT 320

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             K+ +ST     ++  +   Y++ K  +  LD++DLI  T+ LL+      WI YK+DQ 
Sbjct: 321  LKIIESTYHLYRISTAVLHFYQQYKLSHNYLDYDDLIRYTHKLLRNTSSKDWILYKLDQS 380

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            I+HIL+DE QD SL QW ++ +L  D   G    ++  T F VGD+KQ+IYSF GA+ + 
Sbjct: 381  IDHILVDEAQDNSLEQWNIVLTLLNDLLAG-GNKNNNSTFFVVGDKKQAIYSFQGADVEV 439

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                 R        A + F  + L +S+RST +IL VV  VF+           S   ++
Sbjct: 440  FNTLSRELNSSFNVAKKPFKSVSLDVSYRSTQEILNVVHAVFTDISLQMPELFCSDDLVK 499

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQ---QESWTSYFDSLPQESSASILARRIAYTI 353
             + +R    G VQLW+ VV                 +          S+ +LA++IA+ +
Sbjct: 500  LKCNRAADHGLVQLWDIVVENKSKDDKEVFWPIADASIANGIQTSMQSSYMLAKQIAHYV 559

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            +  I +  +  +  K+ IQ  D L+LVR+R +                + V G DR  L 
Sbjct: 560  NLQISSKRVLPS-TKQAIQCSDFLILVRRRNE---FVKQLVSELRKLNLKVSGIDRVSLQ 615

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
            DHL+I DL++L +F+++Q+DDL+  C+LKSP  + +E+DI+ +C  +   +++++++   
Sbjct: 616  DHLSIIDLISLAKFVIAQDDDLNLACLLKSPFIDCTEEDIYFLCRSKKHKDSIWQFLTTI 675

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                +  +Q V+  +H+ I +    +P  FF L++     RQ  I+   ++  D++DEFL
Sbjct: 676  EKDNLY-YQSVVSKLHKFIDLYCSSTPDYFFHLVIEVLNYRQVLINVNIDDGNDIIDEFL 734

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                   ++  +SL+E I   +     IKR      + + IMTVH AKGL++P+V L DT
Sbjct: 735  KVVEYFFKSFSNSLREFIIWFDSNNIEIKRDVDT-QDCINIMTVHAAKGLQAPIVILPDT 793

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                        +     L ++ G  +W  QSK  +N +    +  K +  +EY RLLYV
Sbjct: 794  T--------TLPISPSGILWNNDGNMLWRIQSKHCDNYLKTQAEISKHADYQEYLRLLYV 845

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK----------------- 696
             MTRA D+LIIC ++  +    + QR WY+++ +S      +                  
Sbjct: 846  AMTRAEDELIICGYNTAAT---APQRCWYNIIKESMSKIPGISRRECNLDFTCINKVVYN 902

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI---KNDINE 753
            +++ ++ +      + +    +  +  LE +  ++ +   +   K L   I   + D+N 
Sbjct: 903  RVEFSSELLTQIINSVQEEAAYKYSNLLECKSDVQDVNQAEHDYKSLVKQIFDFRFDLNR 962

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
               L   +++    ++  S L      N G++ HK+L+ I           I  +   + 
Sbjct: 963  ILELKFLSVNLISLSSF-SPLEGEHGINYGVVCHKILEEITKNRN------IELFLNASY 1015

Query: 814  KLWPAKEYKNLLLSIT-RLLENPMMTTAMSC-DSYSEVSVSGK--------------INC 857
                  + KN +  +   L+ N      ++  +  SEV+V                    
Sbjct: 1016 VKLLTIKQKNKVEEVLNALIANQEFNYLLNSYELKSEVNVGVMCLSDHSDISSNNDAFYI 1075

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
                + +  RID ++I   +I I +YKT   VP+    +  +++ QL  Y  I+K  YP 
Sbjct: 1076 DDTKVFVFKRIDLLAIKSNHIVIVDYKTDVLVPETQLEVQSSYLKQLKSYHDIIKLIYPM 1135

Query: 918  KSLVCLLIYVSEPKVFII 935
             ++   ++++       I
Sbjct: 1136 HTVNTKILWLENVCFMNI 1153


>gi|304320182|ref|YP_003853825.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503]
 gi|303299085|gb|ADM08684.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503]
          Length = 1166

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 227/963 (23%), Positives = 404/963 (41%), Gaps = 49/963 (5%)

Query: 1    LKNRFGLSLNESYELIYKDLWP-LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
            L  + G   +   + I +     L    V   ++      +       +  + L      
Sbjct: 232  LIEQLGEGGDSDVDDIKRHCLQTLDREFVRQFSRIAPDIAKGAKERTFRAREALSAWE-- 289

Query: 60   QCIEERFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                  F  L S FL         +     ++I    P +  +  +        R R   
Sbjct: 290  ADDPSAFDHLCSAFLKADGQRPADKTMAGNKDIRGILPSVAAEWAELATALEAARHRITA 349

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
              + ++  A+  L +         K +  +LD++DL+ +   LL + D + W+++K+   
Sbjct: 350  CAIIRTHAATERLLRRTTDFCRAEKARRGLLDYDDLVASAASLLTRTDHA-WLQFKLSHG 408

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            ++H+L+DE QDT   QW V+  L +           P+T+F VGD KQSIY+F GA+   
Sbjct: 409  LHHLLVDETQDTGPSQWSVLNPLRQALLAHNG--EVPKTVFFVGDRKQSIYAFQGADADL 466

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
              RE+   +  A+        + L  SFRS+  IL VVD+ F+  E  +GLS+D+   IR
Sbjct: 467  FERERAETETLASRDHFVSRQLFL--SFRSSQAILDVVDESFTPEEARRGLSDDA--PIR 522

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
            H +++    G V+LW           +P    W++  D++  E     LA+R+A  I   
Sbjct: 523  HVAAKPDLPGKVELWPLERRDETLTEDP----WSAPVDAVRPEHPTRKLAKRLAADIKKR 578

Query: 357  IGTDT-IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            +G D  I  NG KR +  +DIL+L + R   P+   + R L ++  I   G DR  L + 
Sbjct: 579  VGRDDCILKNGDKRPLAYRDILLLCQTR--GPIFHEVLRAL-SEAAIPTAGADRLPLMED 635

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            +A++DL++  RF ++ EDDLS   +LKSPL    +D +F +   R +  T++  +++ A 
Sbjct: 636  IAVRDLLSALRFAVNHEDDLSLAELLKSPLVGIDDDLLFALAHGRDQGVTLWSRVREAAG 695

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG--AKKGRQQFISRFGNEVIDVLDEFL 533
                +    +  I E         P    +  L      G  +F  R G  V   L+E L
Sbjct: 696  S-DDRLAAAVAMIEEAEGTGHASGPFALLSSYLDGGQPSGWLRFHRRLGLGVDLALEELL 754

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
               +  EQ    SL   +  LE+       IKR      + VR+MTVH AKG E+  V+L
Sbjct: 755  TDAIAFEQAEPRSLVGFVHYLERSLSDGRIIKRDSEDTEDVVRVMTVHGAKGREAHTVYL 814

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            +D               +        G  +  P S   + ++    +  K   +EEY R 
Sbjct: 815  IDANKP---------SELKADFIKGDGGKLICPPSGVSHPLLDLAKEKAKAREREEYRRR 865

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK--DE 708
            LYVGMTRA  +L+I   + TS +              S++        +L   + +    
Sbjct: 866  LYVGMTRAEQRLVITGTAGTSKDDPEAVAEAKPPAEASWYGLVAQAMTRLGERVERQSSP 925

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
              A         +     +    +      IP  LF     ++ E   L PS    + + 
Sbjct: 926  GEAPLRVLSVASSRDRRVQPDKARQSAASAIPNWLFRAADREVEE-RTLAPSHAVDQDQG 984

Query: 769  N------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                     +++       RG+++H L + +  L   +R+     Y   +    PA+E  
Sbjct: 985  RSISTIGPLAMVEGQGARRRGILLHGLFERLPPLAPAQRRPLGARYLACHGGDIPAEERA 1044

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
              L  +  +LEN       S  + +E++++G++     +  ISG+ID++ + ++ +   +
Sbjct: 1045 RWLEEVLGILENEAFAEVFSPAAKTEMAIAGRL----GNRRISGQIDRLVLREEEVVFVD 1100

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            +KTH   P+ +E +    ++Q+++Y  +L+  +P + +   L++    ++  +P+  L  
Sbjct: 1101 FKTHRPPPRRVEDVESATLSQMALYHMLLRQRFPGRRVTGALLWTYTAQLMPLPEAVLLS 1160

Query: 943  AFA 945
            A  
Sbjct: 1161 ALE 1163


>gi|85708412|ref|ZP_01039478.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1]
 gi|85689946|gb|EAQ29949.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1]
          Length = 818

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/833 (25%), Positives = 356/833 (42%), Gaps = 52/833 (6%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + +     +EEAK +   LDF+DLI     LL K + S WIRYK+D+  +H+LIDE QDT
Sbjct: 1   MGRSFALRWEEAKAREGFLDFDDLIRKAATLLGKSEASDWIRYKLDRSFDHVLIDEAQDT 60

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           +  QW+++ +L +DFF G+       RT+F VGD KQ+I+ F G  P    R K+  + R
Sbjct: 61  NSAQWDIVFALIDDFFAGEGARGDRVRTIFTVGDYKQAIFGFQGTSPDNFERAKQKVKAR 120

Query: 248 ATNAG------------QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
             +A               ++ ++L  S+R++  +L  V++V        G         
Sbjct: 121 IDDAKANAGELRENRRLPTWNDLDLGRSYRTSLPVLDFVNRVIETL----GYGAFGLNKA 176

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                   + G V LW+ V+   D         W    D        + LA +IA  +  
Sbjct: 177 PADHVGADRPGLVALWDPVMGAADDPDEEDDRDWLPAHD--------TRLAEKIAEQVRR 228

Query: 356 MIGTDTI--FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            +  +       GK+R   A DI+VLVR+RKD   +        +   ++V G DR  L 
Sbjct: 229 WVSEEEPFVLEKGKRRHASAGDIMVLVRRRKD---LAAQIVAKLHAKGVAVAGVDRLRLG 285

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
             L +KDLMA  RF     DDLS   +L SPL  +++DD+ +    R   + ++++++K 
Sbjct: 286 APLVVKDLMAALRFAAQPLDDLSLANLLASPLIGWTQDDLLE-YVPRDPGKRLWDHLRKH 344

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEF 532
                 + +  I  + EL+  A F +P      +L G  + R+   +R G E  D +DE 
Sbjct: 345 E---APRVEETITKLRELLARADFETPQTLLAWLLTGPWQARRALAARLGREANDPIDEL 401

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           LN     E     SL   I   +     +KR       +VR+MTVH +KGL++P+V L D
Sbjct: 402 LNAAFAFEAAHTPSLAGFIEWFDAGEGELKRDADEATGQVRVMTVHGSKGLQAPIVILAD 461

Query: 593 TGSQVFSHKHIK--KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
              +      ++     I  + +    +P+       R   V    +    +  +E+ RL
Sbjct: 462 ATGEPGQGGALELADDPIGNAGDGARKVPLPSLSKDERVGPVRLAEEKASVAQMQEHWRL 521

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           LYV MTRA + L I         KK               +    +   + ++  + + I
Sbjct: 522 LYVAMTRAEEALFIGGSLGPRQAKKGEP----------HEDSWYARLAPVFDAPPQQDSI 571

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-KTN 769
             E         PL   +T       + +P     PI  +   P  L PS+         
Sbjct: 572 WGERREWGVRADPLVGSDTPAATTGTEPLPMWATKPIGPEPRPPKPLAPSSAAEDQSADP 631

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
             +         RG ++H+LL+ +  L   +R+    S+  + A     K  + +L S  
Sbjct: 632 PLAPEIAAIAARRGTLMHRLLERLPDLAVAEREAAARSWLARQAGDLDEKTREEILSSSL 691

Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
            +L  P      S D+ +EV     +      I+++G  D++ ++++ + + ++KT    
Sbjct: 692 AVLVEPGFAELFSADALAEVP----LAAQVDGIVVAGTADRLHVTEEVVTVVDFKTTRRP 747

Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
           P+ ++ IP   + Q++ Y   L+  YP + +   ++Y    K+  IP+  L  
Sbjct: 748 PESLDDIPRATLRQMAAYASALEAIYPGREVRAAVLYTQNTKLIEIPKVTLAD 800


>gi|256005816|ref|ZP_05430767.1| recombination helicase AddA [Clostridium thermocellum DSM 2360]
 gi|255990217|gb|EEU00348.1| recombination helicase AddA [Clostridium thermocellum DSM 2360]
 gi|316941647|gb|ADU75681.1| recombination helicase AddA [Clostridium thermocellum DSM 1313]
          Length = 1251

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/1009 (16%), Positives = 339/1009 (33%), Gaps = 147/1009 (14%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSF----FLT-----QKFTPQKNIITQEINKKSPD 95
              L     L +    +   +   + ++     F T     ++    K  I ++I     D
Sbjct: 255  EDLANVDALLKLLNEESEMQWDRIFNALQGFEFATLPRCGREVDKDKQEIVKKIRD---D 311

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKM---FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
            +K++++K +++ I          +   +        L K L   Y E K +  V+DF DL
Sbjct: 312  VKQRIRKFREKVITSVSNEIISDLKALYPKMKCLANLVKQLAEKYAEKKNRKSVVDFNDL 371

Query: 153  IINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
                 ++L +       + +       +    IL+DE QD++L+Q  +I  +++      
Sbjct: 372  EHFCLEILTERKEDGSIIPSRTAISYRERFAEILVDEYQDSNLVQETIINMISKGDDASP 431

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                    +F VGD KQSIY F  A P+  L +         + G     I L  +FRS 
Sbjct: 432  G-------VFMVGDVKQSIYRFRQARPELFLEKYNTY---LPDKGSPCRKIILSRNFRSR 481

Query: 268  ADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQ-------VGTVQLWEQVVSQH 318
             +++  V+ +F       A  L       +   +             G V+         
Sbjct: 482  REVIDAVNFLFKQIMSTGAGELDYTDAEALNFGAVFDENAKEDITVGGEVEFHLIQTEDE 541

Query: 319  DSQCNPQQESWTSYFDSLPQESSA-----SILARRIAYTISNMIG--------TDTIFSN 365
            D     + E          +E           AR +   I  ++         +    + 
Sbjct: 542  DKNFTFENEGEEGRQADEGEEDEEMLDSIQCEARLVGRRILELMKPDENGRYFSVFDKAK 601

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             + R ++ +D+++L+R    T     +     +   I V  +        + ++ +++L 
Sbjct: 602  NEYRRVEYRDVVILLRT---TRNWAEVFVDELSVMGIPVFADTGTGFFKTVEVQVMLSLL 658

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----CGISKF 481
            + I +   D+  + +L+SP+  F+ D++ ++     +   +++ ++K A         K 
Sbjct: 659  QIIDNPLQDIPLLSVLRSPIVGFTTDELAEL-RLVDKKALLFDALKKLAESGQGEAAGKA 717

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540
               ++ + +   ++ + S       +               G +    L        + E
Sbjct: 718  SAFLENLQKWREMSLYMSTDRLLWQLYNDTGYYSIVGAMPAGEQRQANLRILYERARQFE 777

Query: 541  QNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            + SY  L   I+ ++     +      +  S N N VRIM++H +KGLE PVV +   G 
Sbjct: 778  ETSYKGLFNFINFIDKLKSSRGDMGSAKILSENDNVVRIMSIHKSKGLEFPVVIVAGCGK 837

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +       K + +   L   P +     +    +     + + +K  T  E  R+LYV +
Sbjct: 838  KFNLQDMNKSILLHHELGFGPDVVDHKLRLSWPSVAKQAIREKIKAETLSEEMRILYVAL 897

Query: 656  TRASDQLIICKHSNTSNEKKSNQ----------RTWYDMVYDSFHNDERVKK-------- 697
            TRA ++L+I      + +                + YDM+  + + D             
Sbjct: 898  TRAREKLVITGAVKNARKAVEKWLDSASVQESRLSAYDMLSGANYLDWIGPALLRHKNCG 957

Query: 698  ---------------IKLTNSINKDEWIAYEWSTHHPENTPLERE----------ETIKQ 732
                           I   +  +   W   +  +        E E          E   +
Sbjct: 958  GLRDCVGSAGFRGLLIDDPSVWSVKIWNKTDVQSSGVSEEQGESEFIKWLDSLEKEEPSE 1017

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--------------------GKTNLES 772
              +E         P       P  ++ + +  +                     K     
Sbjct: 1018 YAEETARRLSWSYPYVKASKVPAKVSVTELKRRYNEMVSEDVMQFPDYMPVLVKKPMFLE 1077

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRL 831
                     +G I+H ++Q +        +  I     KN  L   ++ +++    I R 
Sbjct: 1078 EKKGLTYAEKGTILHFVMQHL-DYGREDIEAQIEEMVAKN--LLTPQQAQSVDAARIRRF 1134

Query: 832  LENPMMTTAMSCDSY-SEVSVSGKIN------------CPKKDIIISGRIDQISISQQNI 878
            L +P+    ++  S   EV  + +I             C  + +++ G +D        I
Sbjct: 1135 LNSPLGKRMLASKSINREVPFNIEIPCHELYRDMEDEACHGETLLLQGVVDCYFEEPDGI 1194

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             + +YKT +  P  +E I   +  Q+  Y + L+     K +    IY+
Sbjct: 1195 VLVDYKTDYVAPGNVETIRERYKVQILYYARALE-MLTGKKVKEKYIYL 1242


>gi|125974531|ref|YP_001038441.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium
            thermocellum ATCC 27405]
 gi|251764521|sp|A3DH19|ADDA_CLOTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|125714756|gb|ABN53248.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium
            thermocellum ATCC 27405]
          Length = 1251

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/1009 (16%), Positives = 335/1009 (33%), Gaps = 147/1009 (14%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSF----FLT-----QKFTPQKNIITQEINKKSPD 95
              L     L +    +   +   + ++     F T     ++    K  I ++I     D
Sbjct: 255  EDLANVDALLKLLNEESEMQWDRIFNALQGFEFATLPRCGREVDKDKQEIVKKIRD---D 311

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKM---FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
            +K++++K +++ I          +   +        L K L   Y E K +  V+DF DL
Sbjct: 312  VKQRIRKFREKVITSVSNEIISDLKALYPKMKCLANLVKQLAEKYAEKKNRKSVVDFNDL 371

Query: 153  IINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
                 ++L +       + +       +    IL+DE QD++L+Q  +I  +++      
Sbjct: 372  EHFCLEILTERKEDGSIIPSRTAISYRERFAEILVDEYQDSNLVQETIINMISKGDDASP 431

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                    +F VGD KQSIY F  A P+  L +         + G     I L  +FRS 
Sbjct: 432  G-------VFMVGDVKQSIYRFRQARPELFLEKYNTY---LPDKGSPCRKIILSRNFRSR 481

Query: 268  ADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQ-------VGTVQLWEQVVSQH 318
             +++  V+ +F       A  L       +   +             G V+         
Sbjct: 482  REVIDAVNFLFKQIMSTGAGELDYTDAEALNFGAVFDENAKEDITVGGEVEFHLIQTEDE 541

Query: 319  DSQCNPQQESWTSYFDSLPQESSA-----SILARRIAYTISNMIG--------TDTIFSN 365
            D     + E          +E           AR +   I  ++         +    + 
Sbjct: 542  DKNFTFENEGEEGRQADEGEEDEEMLDSIQCEARLVGRRILELMKPDENGRYFSVFDKAK 601

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             + R ++ +D+++L+R    T     +     +   I V  +        + ++ +++L 
Sbjct: 602  NEYRRVEYRDVVILLRT---TRNWAEVFVDELSVMGIPVFADTGTGFFKTVEVQVMLSLL 658

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----CGISKF 481
            + I +   D+  + +L+SP+  F+ D++ ++     +   +++ ++K A         K 
Sbjct: 659  QIIDNPLQDIPLLSVLRSPIVGFTTDELAEL-RLVDKKALLFDALKKLAESGQGEAAGKA 717

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540
               ++ + +   ++ + S       +               G +    L        + E
Sbjct: 718  SAFLENLQKWREMSLYMSTDRLLWQLYNDTGYYSIVGAMPAGEQRQANLRILYERARQFE 777

Query: 541  QNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            + SY  L   I+ ++     +      +  S N N VRIM++H +KGLE PVV +   G 
Sbjct: 778  ETSYKGLFNFINFIDKLKSSRGDMGSAKILSENDNVVRIMSIHKSKGLEFPVVIVAGCGK 837

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +       K + +   L   P +     +    +     + + +K  T  E  R+LYV +
Sbjct: 838  KFNLQDMNKSILLHHELGFGPDVVDHKLRLSWPSVAKQAIREKIKAETLSEEMRILYVAL 897

Query: 656  TRASDQLIICKHSNTSNEKKSNQ----------RTWYDMVYDSFHNDERVKKI------- 698
            TRA ++L+I        +                + YDM+  + + D     +       
Sbjct: 898  TRAREKLVITGAVKNVRKAVEKWLDSASVQKSRLSAYDMLSGANYLDWIGPALLRHKNCG 957

Query: 699  ----------------------------------KLTNSINKDEWIAYEWSTHHPENTPL 724
                                                 +    +        +   E    
Sbjct: 958  GLRDCVGSAGFRGLLIDDPSVWSVKIWNKTDVQSSGVSEEQGESEFIKWLDSLEKEEPSE 1017

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK------------GKTNLES 772
              EET ++L       K    P K  + E        +                K     
Sbjct: 1018 YAEETARRLSWSYPYVKASKVPAKVSVTELKRRYNEVVSEDVMQFPDYMPVLVKKPMFLE 1077

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRL 831
                     +G I+H ++Q +        +  I     K   L   ++ +++    I R 
Sbjct: 1078 EKKGLTYAEKGTILHFVMQHL-DYGREDIEAQIEEMVAK--DLLTPQQAQSVDAARIRRF 1134

Query: 832  LENPMMTTAMSCDSY-SEVSVSGKIN------------CPKKDIIISGRIDQISISQQNI 878
            L +P+    ++  S   EV  + +I             C  + +++ G +D        I
Sbjct: 1135 LNSPLGKRMLASKSINREVPFNIEIPCHELYRDMEDEACHGETLLLQGVVDCYFEEPDGI 1194

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             + +YKT +  P  +E I   +  Q+  Y + L+     K +    IY+
Sbjct: 1195 VLVDYKTDYVAPGNVETIRERYKVQILYYARALE-MLTGKKVKEKYIYL 1242


>gi|281419055|ref|ZP_06250072.1| recombination helicase AddA [Clostridium thermocellum JW20]
 gi|281407204|gb|EFB37465.1| recombination helicase AddA [Clostridium thermocellum JW20]
          Length = 1251

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 165/1009 (16%), Positives = 336/1009 (33%), Gaps = 147/1009 (14%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSF----FLT-----QKFTPQKNIITQEINKKSPD 95
              L     L +    +   +   + ++     F T     ++    K  I ++I     D
Sbjct: 255  EDLANVDALLKLLNEESEMQWDRIFNALQGFEFATLPRCGREVDKDKQEIVKKIRD---D 311

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKM---FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
            +K++++K +++ I          +   +        L K L   Y E K +  V+DF DL
Sbjct: 312  VKQRIRKFREKVITSVSNEIISDLKALYPKMKCLANLVKQLAEKYAEKKNRKSVVDFNDL 371

Query: 153  IINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
                 ++L +       + +       +    IL+DE QD++L+Q  +I  +++      
Sbjct: 372  EHFCLEILTERKEDGSIIPSRTAISYRERFAEILVDEYQDSNLVQETIINMISKGDDASP 431

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                    +F VGD KQSIY F  A P+  L +         + G     I L  +FRS 
Sbjct: 432  G-------VFMVGDVKQSIYRFRQARPELFLEKYNTY---LPDKGSPCRKIILSRNFRSR 481

Query: 268  ADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQ-------VGTVQLWEQVVSQH 318
             +++  V+ +F       A  L       +   +             G V+         
Sbjct: 482  REVIDAVNFLFKQIMSTGAGELDYTDAEALNFGAVFDENAKEDITVGGEVEFHLIQTEDE 541

Query: 319  DSQCNPQQESWTSYFDSLPQESSA-----SILARRIAYTISNMIG--------TDTIFSN 365
            D     + E          +E           AR +   I  ++         +    + 
Sbjct: 542  DKNFTFENEGEEGRQADEGEEDEEMLDSIQCEARLVGRRILELMKPDENGRYFSVFDKAK 601

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             + R ++ +D+++L+R    T     +     +   I V  +        + ++ +++L 
Sbjct: 602  NEYRRVEYRDVVILLRT---TRNWAEVFVDELSVMGIPVFADTGTGFFKTVEVQVMLSLL 658

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----CGISKF 481
            + I +   D+  + +L+SP+  F+ D++ ++     +   +++ ++K A         K 
Sbjct: 659  QIIDNPLQDIPLLSVLRSPIVGFTTDELAEL-RLVDKKALLFDALKKLAESGQGEAAGKA 717

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540
               ++ + +   ++ + S       +               G +    L        + E
Sbjct: 718  SAFLENLQKWREMSLYMSTDRLLWQLYNDTGYYSIVGAMPAGEQRQANLRILYERARQFE 777

Query: 541  QNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            + SY  L   I+ ++     +      +  S N N VRIM++H +KGLE PVV +   G 
Sbjct: 778  ETSYKGLFNFINFIDKLKSSRGDMGSAKILSENDNVVRIMSIHKSKGLEFPVVIVAGCGK 837

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +       K + +   L   P +     +    +     + + +K  T  E  R+LYV +
Sbjct: 838  KFNLQDMNKSILLHHELGFGPDVVDHKLRLSWPSVAKQAIREKIKAETLSEEMRILYVAL 897

Query: 656  TRASDQLIICKHSNTSNEKKSNQ----------RTWYDMVYDSFHNDERVKKI------- 698
            TRA ++L+I      + +                + YDM+  + + D     +       
Sbjct: 898  TRAREKLVITGAVKNARKAVEKWLDSASVQESRLSAYDMLSGANYLDWIGPALLRHKNCG 957

Query: 699  ----------------------------------KLTNSINKDEWIAYEWSTHHPENTPL 724
                                                 +    +        +   E    
Sbjct: 958  GLRDCVGSAGFRGLLIDDPSVWSVKIWNKTDVQSSGVSEEQGESEFIKWLDSLEKEEPSE 1017

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK------------GKTNLES 772
              EET ++L       K    P K  + E        +                K     
Sbjct: 1018 YAEETARRLSWSYPYVKASKVPAKVSVTELKRRYNEVVSEDVMQFPDYMPVLVKKPMFLE 1077

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRL 831
                     +G I+H ++Q +        +  I     K   L   ++ +++    I R 
Sbjct: 1078 EKKGLTYAEKGTILHFVMQHL-DYGREDIEAQIEEMVAK--DLLTPQQAQSVDAARIRRF 1134

Query: 832  LENPMMTTAMSCDSY-SEVSVSGKIN------------CPKKDIIISGRIDQISISQQNI 878
            L +P+    ++  S   EV  + +I             C  + +++ G +D        I
Sbjct: 1135 LNSPLGKRMLASKSINREVPFNIEIPCHELYRDMEDEACHGETLLLQGVVDCYFEEPDGI 1194

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             + +YKT +  P  +E I   +  Q+  Y + L+     K +    IY+
Sbjct: 1195 VLVDYKTDYVAPGNVETIRERYKVQILYYARALE-MLTGKKVKEKYIYL 1242


>gi|220935292|ref|YP_002514191.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996602|gb|ACL73204.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1147

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 189/955 (19%), Positives = 345/955 (36%), Gaps = 59/955 (6%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
               +  +                        ++  +     T     Q L  A       
Sbjct: 227  ALAVDPDADPRG------DCLDPATRADLTDLAALLARNTSTDKPLGQALADALAIGDTG 280

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKS--PDLKEKLKKSQ----DEFIKIRDRFNTY 117
              F    +  LTQK TP+    +    K+      +++L        + ++   D     
Sbjct: 281  VLFEAARAALLTQKNTPRVRKQSAAQAKRLGGEAAEDRLLALHGTLCERWLAALDGLARQ 340

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
               +   A  +       HY+  K++   LDF DL      LL   D + W++Y++D  I
Sbjct: 341  HSLRLNGAWFSAGLRYLEHYQALKEELRTLDFTDLEWRAYQLLNHGDHALWVQYRLDSRI 400

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             H+LIDE QDT+  QW +I  L E+           R++F VGD KQSIYSF  A+P+  
Sbjct: 401  EHLLIDEFQDTNPTQWRLILPLLEELAAHGERQG--RSVFLVGDTKQSIYSFRRADPRLQ 458

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                R  ++R     +      L  S+RS+  ++  V++VF+       L         H
Sbjct: 459  EIAARWIEERLNGRPE-----TLDWSWRSSPAVMDFVNRVFTACPA---LRAALPGFHPH 510

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCN-PQQESWTSYFDSLPQESSASILAR---RIAYTI 353
             +      G V++W  + +  +++ + P  +       +   +   S+ AR   RIA  I
Sbjct: 511  DTHLKDLWGRVEVWPLIQADQETEEDTPASQGLRDPLTTPRPDPGESLHAREGARIAARI 570

Query: 354  SNMIGTDTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
              M+    +   G   R +   DI +LVR R     I    R    D  I  +   R  L
Sbjct: 571  REMVDGGQVVGRGASARPMHFGDITILVRNRTHVGAIEDALR----DAGIPYLSAARGEL 626

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
             DHL ++DL AL R +++  DDL+   +L+SPLF+ +  ++ ++                
Sbjct: 627  LDHLEVRDLEALLRVLITPHDDLALAQVLRSPLFDVTHRELERLADAGPGPWHERLERLA 686

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV----IDV 528
                  S  +     +      +     HD    I        ++ +    +     +  
Sbjct: 687  PDLPPGSALKRAADKLTRWRAWSGALPVHDLLDRIFLDGNVLARYQAGSRADRVPTVMAS 746

Query: 529  LDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            L  FL   L  +   Y SL   ++ L                      VRIMT+H +KGL
Sbjct: 747  LIRFLELALEVDSGRYPSLVHFLARLRGLRDRSDAAPDTPPVRGAEQRVRIMTIHASKGL 806

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E+PV+FL D  +    HK  + +   P+    P +   +P+S   +++    + H + + 
Sbjct: 807  EAPVIFLADAAAVPRDHKTYEPLVQWPAGEPRPRLMQLLPRSDDVDSLTRQALAHHQTAR 866

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            + E   LLYV +TRA   LI+   +    +       WY  + ++   +   +++     
Sbjct: 867  EREEANLLYVALTRARQVLIVSASARGKGDGG-----WYARIREAIAPEAVSEELDTGVP 921

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
                E  ++      P     +   T       + + ++L          P         
Sbjct: 922  GRFAEDGSWVHEAGTPPVAAEQAVATPPAAQVPEGLNRRLECAAPEREIAPSR------A 975

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
              G    E    D     RG+ IH+LL+ +           I     +        +   
Sbjct: 976  AAGYAEGEREDGDEDARLRGVGIHRLLEWLAGGMRDSDAALIRRLAAELGLDPGHPDLGE 1035

Query: 824  LLLSITRLLENPMMTTAMSCD----SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
             L     +L  P +    +       Y EV +            + G ID++ + ++ I 
Sbjct: 1036 WLGEARAVLAEPGLAAVFAPAPDCVDYCEVPLQYTAA---DGRTVYGIIDRLRVGRERIL 1092

Query: 880  IFEYKTHHHVPQEIE-HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
            + +YKTH    +     +   + A +++Y + ++  +P +++   L++     + 
Sbjct: 1093 LVDYKTHRVADEAAARQVAEVYAAPMALYAEGVRRLWPGRTVEARLLFTHLRALV 1147


>gi|220929196|ref|YP_002506105.1| recombination helicase AddA [Clostridium cellulolyticum H10]
 gi|251764516|sp|B8I2Y2|ADDA_CLOCE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|219999524|gb|ACL76125.1| recombination helicase AddA [Clostridium cellulolyticum H10]
          Length = 1248

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 154/973 (15%), Positives = 319/973 (32%), Gaps = 131/973 (13%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +          ++I  +   +   L+             +   M+        L      
Sbjct: 294  KDAEKSVQESVKKIRDELKSVINGLRDEVFFMESDEIASDLKTMYPILKCVSRLVMDFGR 353

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSL 190
             Y   K +   +DF DL     ++L + D         I      +   IL+DE QD++L
Sbjct: 354  RYAHKKSQRASVDFNDLEHFCLNILAETDKDGNIRPTKIAQNYKDKFTEILVDEYQDSNL 413

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +Q  +I  +++              +F VGD KQSIY F  A+P+  L +          
Sbjct: 414  VQEIIINMISKKDI-------GSPNVFMVGDVKQSIYRFRQAKPELFLEKYNNYSID--- 463

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV----- 305
                +  I L  +FRS  D++  ++ +F    + +    D                    
Sbjct: 464  EDSSYRKILLFKNFRSRKDVVDGINYIFKQIMSQKVGELDYNEIEELNPGAGFSPCQNEE 523

Query: 306  ----GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTISNMIG 358
                G ++L     S  D+    +        D   ++    +    AR +A  I  +  
Sbjct: 524  TVVGGAIELHLIETSVGDNTVLSEGSEPMDEQDFPEEDEILDNIQKEARMVANRIIELFQ 583

Query: 359  TDTIFSN--------GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             D             G+ R ++  DI++L+R    T   T +      +  I V  +   
Sbjct: 584  ADKDGKKYAVYDKKLGEYRNVRFSDIVILLRT---TRNWTEVFSAELANADIPVFADTGS 640

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
                   ++ +++L + I +   D+  + +L+SP+ NFS  D+  +        +++E +
Sbjct: 641  GFFKTPEVQVVLSLLQIIDNPYQDIPLLAVLRSPIVNFSTADLTDVRLMN-RNASIFEAL 699

Query: 471  QK---FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVI 526
            ++          K    ++ + +   ++ + S H+    +             + G    
Sbjct: 700  KETAVHDTQVSKKASDFLQKLEKWRDMSLYMSTHELIWQLYNETGYFSIVGAMQDGERKQ 759

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581
              L       L+ E  SYS L   IS +++           +    N N VR+M++H +K
Sbjct: 760  ANLKILFERALQYENTSYSGLFNFISFIDKLKTNKGDMGSAKVLGENDNVVRLMSIHKSK 819

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVVFL   G +       K + +   L   P    +  + K  +     + + ++ 
Sbjct: 820  GLEFPVVFLCGCGKKFNMQDMYKSILLHQELGFGPDFVDYKKRIKYPSIPKQAIAQKIRI 879

Query: 642  STQEEYNRLLYVGMTRASDQLIICK-----------HSNTSNEKKSNQRTWYDMVYDSFH 690
             T  E  R+LYV MTRA ++LII                T+    +       +   ++ 
Sbjct: 880  ETLSEEMRILYVAMTRAREKLIITGSVNNIEKSALKWLGTAQSNDNKFPPHNMLKAQNYL 939

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHP--------------ENTPLEREETIKQLMDE 736
            +      ++  +S+              P              ++     +       D 
Sbjct: 940  DWICPSVMRHKDSVILRNAAGLGVDYSGPTISDDSSWTIILADQSDIAVAKRFETDTQDR 999

Query: 737  QKIPKK--------------------LFSPIKNDINEPYILNPSTID------------- 763
            + I K                          ++    P  ++ + +              
Sbjct: 1000 EDITKWLQEKGSADSGDSHEIHRRLDWKYTYRDFAQIPSKISVTELKRYFHLNNDEDNSQ 1059

Query: 764  ------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                  T  K              +G  +H ++Q +    E               +L  
Sbjct: 1060 LQYKTATIKKPAFLEGKKGLSPAEKGTAMHFVMQHLDFHNEDIAGQVK---IMVKKELLT 1116

Query: 818  AKEYKNL-LLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCP------------KKDII 863
              + K++ ++ I+  + + +    +     Y EV  + ++               +  I+
Sbjct: 1117 EIQAKSIDIMKISAFINSVIGKRMLKSVKVYREVPFNIELPYKEIYPQLPDVSDYEDKIL 1176

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
            + G +D     + +I + +YKT +    + + +   +  Q+S Y + L+     K +   
Sbjct: 1177 LQGVVDCYFEEEDHIVLIDYKTDYIPYGDKQSVKEKYRLQISYYSRALE-MLTLKRVKER 1235

Query: 924  LIYV-SEPKVFII 935
             IY+ S  ++  +
Sbjct: 1236 YIYLFSTGEIVEM 1248


>gi|296188218|ref|ZP_06856610.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7]
 gi|296047344|gb|EFG86786.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7]
          Length = 1243

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 159/988 (16%), Positives = 315/988 (31%), Gaps = 138/988 (13%)

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
            +F  L            K    +  +     + E  +    +   +       +M+    
Sbjct: 277  QFEKLPVKRNKDADKEAKEKSKKIRDDVKKKITEISEDIFLKMSSMGKDLK--EMYPKMK 334

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINH 179
            +   +    N  Y   K++  ++DF D+     ++L           + I  +  Q+   
Sbjct: 335  SLGKIVMEFNERYGAKKRERGLVDFNDIEHFCLNILIDTKENGDITPSKIALEYRQKFEE 394

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ILIDE QD++ +Q  ++ ++        +  +     F VGD KQSIY F  A+P+  L 
Sbjct: 395  ILIDEYQDSNEVQEVIMNAI--------SKKNDIPNTFMVGDVKQSIYRFRQAKPELFLD 446

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRH 297
            +         N       I+L  +FRS  +I+  V+ VF+     N   L  D    ++ 
Sbjct: 447  KYNRYSD---NRVGNERKIKLFKNFRSRPEIIFAVNYVFNQIMSVNIGELEYDEGEMLKS 503

Query: 298  RSSRIGQVGTV-------QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA--SILARR 348
             +        V       +L       ++   +  Q    +  +++ +E+     I AR 
Sbjct: 504  GADFPELGENVMDAESKIELHLLDKKDNEVCEDNSQNPEGAEAENINEETPDNIQIEARL 563

Query: 349  IAYTISNMIGTD----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            +   I ++I  +          K R +  KDI++L+R   +              + I V
Sbjct: 564  VGKRIIDLINNEKFKVYDKDEKKYRNVTYKDIVILLRTTSNWA---PTFVEELKSFGIPV 620

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--- 461
              +      D++ I+ +++L + I +   D+  + +L+SP+  FS ++I  I        
Sbjct: 621  FADTNTGYFDNIEIRTIISLLQIIDNPIQDIPLLSILRSPIEGFSSEEIIDIRMVDRNIN 680

Query: 462  ---------ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                     E++   E I+  +     K  + +  + +    + +    +F   I     
Sbjct: 681  FFSALKIIIESDDADERIKHVSKELKDKVSNFLNKLKKWRKKSLYMPIDEFIWYIYTDTG 740

Query: 513  GRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHS 566
                      G +    L        + E  SY  L   I+ +             +   
Sbjct: 741  YYGFVGAMPGGKQRQANLRILFQRAKQYESTSYKGLFNFINFINKLRNSSGDMGSAKILG 800

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
             N + VRIM+VH +KGLE PVV L  TG         + +     L   P       +  
Sbjct: 801  ENEDVVRIMSVHKSKGLEFPVVILSGTGKNFNLMDMNRSVLFHSELGLGPEYVNIDRRIS 860

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------- 678
                    L K +K  T  E  R+LYV +TRA ++LII   +    +             
Sbjct: 861  YPTIAKQVLKKKIKVETLSEEMRILYVALTRAKEKLIITGTAKDLEKTSEKWCEAIKYEE 920

Query: 679  -------------------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
                                     +      D            +K +W    W   + 
Sbjct: 921  GKIPEYVVINAKNYLDWIVPAVAKHLSGKVIRDIGGVYDFEPLVDDKSKWCVKLWRKENF 980

Query: 720  ENTPLEREETIKQLM---------------DEQKIPKKLFSPIKNDINEPYILNPSTI-- 762
            +N   +  E    +                +E           K   N P   + S I  
Sbjct: 981  KNDLRDENEKEDIIKIVKDESLNGGNSIYYEEVNRRLNWQYKYKESCNIPSKFSVSEIKR 1040

Query: 763  -----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT---LPEHKRK 802
                                 K       +      +G ++H ++Q +         +  
Sbjct: 1041 RFDFLSADEGSSFLVDSSKLNKPVFLQKTTKLSASEKGTLLHTVMQHVDLKKVSNYEEIS 1100

Query: 803  NFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKIN---- 856
            N +     +       +E  ++    I +   + +    + S     EV     ++    
Sbjct: 1101 NQVNDLVNRE--FITREEANSIDANKILKFFNSSLGKRMIKSKKVLREVPFIVSLDSTEL 1158

Query: 857  --------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                      ++ +++ G ID        + + +YKT +    +++ I   +  Q+  Y+
Sbjct: 1159 YKDLPRDVYGEEKVLLQGIIDCYFEEDDELVLLDYKTDYV--DDLDKIKERYSVQIKCYK 1216

Query: 909  KILKDSYPNKSLV-CLLIYVSEPKVFII 935
              L+     K++    L      ++  +
Sbjct: 1217 NALERL-TGKNIKNKYLYLFYNDEILEL 1243


>gi|326202081|ref|ZP_08191951.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium
            papyrosolvens DSM 2782]
 gi|325987876|gb|EGD48702.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium
            papyrosolvens DSM 2782]
          Length = 1247

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 159/995 (15%), Positives = 320/995 (32%), Gaps = 132/995 (13%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
                +       F   +     +          ++   +   +   L+            
Sbjct: 272  AHWDRLYDYINSFEFQTLPRCGKDAEKTVQESVKKTRDELKSVITGLRNEVFMKSDEIAS 331

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAW 168
                 M+        L       Y + K +   +DF DL     ++L + D         
Sbjct: 332  DLKA-MYPVLKCVSKLVVDFGRRYSQKKSQRASVDFNDLEHFCLNILAETDEDGKIRPTK 390

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            I      +   IL+DE QD++L+Q  +I  ++++             +F VGD KQSIY 
Sbjct: 391  IAQHYKDKFTEILVDEYQDSNLVQEIIINMISKE-------DRGSPNVFMVGDVKQSIYR 443

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F  A+P+  L +           G  +  I L  +FRS  +++  ++ +F    + +   
Sbjct: 444  FRQAKPELFLEKYDNYSID---EGSSYRKILLFKNFRSRKEVVDGINYIFKQIMSQKVGE 500

Query: 289  EDSTTTIRHRSS---------RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             D                   +    G ++L     S  D+    +        DS  +E
Sbjct: 501  LDYNEIEELNPGAGFPPCQNEKTVAGGAIELHLIETSAADNSAQSEVNEEMEEDDSSEEE 560

Query: 340  ---SSASILARRIAYTISNMIGTDTIFSN--------GKKRVIQAKDILVLVRKRKDTPL 388
                +    AR +A  I  +   D+            G  R ++  DI++L+R    T  
Sbjct: 561  EILDNIQKEARMVANRIIELFKPDSDGKKFVIYDKKLGDYREVRFNDIVILLRT---TRN 617

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
             T +         I V  +          ++ +++L + I +   D+  + +L+SP+ NF
Sbjct: 618  WTEVFSEELAKSDIPVFADTGSGFFKTPEVQVVLSLLQIIDNPYQDIPLLSVLRSPIVNF 677

Query: 449  SEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFT 505
            S  D+ ++        +++E I++ +        K    ++ + +   ++ + S H    
Sbjct: 678  STGDLAEVRLMN-RNASIFEAIKEISGQDKEVSKKSSAFLEKLSKWREMSLYMSTHKLIW 736

Query: 506  LILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPP 559
             +             + G      L       L+ E  SY+ L   IS +++        
Sbjct: 737  QLYDETGYFSIVGAMQDGERKQANLKILFERALQFENTSYNGLFNFISFIDKLKTNKGDM 796

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
               +    N N VR+M++H +KGLE PVVFL   G +       K + +   L   P   
Sbjct: 797  GSAKVLGENDNVVRLMSIHKSKGLEFPVVFLCGCGKKFNMQDMYKSVLLHQELGFGPDFV 856

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ- 678
             +  + K  +     + + ++  T  E  R+LYV MTRA ++LII    N + +      
Sbjct: 857  DYKRRIKYPSIPKQAISQKIRVETLSEEMRILYVAMTRAREKLIITGSVNNAEKSALKWL 916

Query: 679  ------------------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                              + + D +  S    +  + ++    +  D            +
Sbjct: 917  GTAQSNGNKFPSHNMLKAQNYLDWICPSIMRHKDSEALRKAAGLGVDYSGPVISDESFWK 976

Query: 721  NTPLEREETIK--------------------------QLMDEQKIPKKLFSPIKNDINEP 754
                 +                               +   E         P +     P
Sbjct: 977  IILTNQSGIAVTKKMETDIKGREDILNWLHQKENCDNEAAIEIHRRLGWKYPYREFAQIP 1036

Query: 755  YILNPSTID-------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
              L+ + +                    T  K              +G  +H  +Q +  
Sbjct: 1037 SKLSVTELKRYFNLNNDEDNSQPEFKTTTIKKPAFLEKKKGLSPAEKGTAMHFAMQHMDF 1096

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSC-DSYSEVSVSG 853
              +               +L    + K++ +  I   + + +    +     + EV  + 
Sbjct: 1097 RNQDIEGQIE---LMVKKELLTEVQAKSIDIRKIRSFINSAVGKRMLDSCKIHREVPFNI 1153

Query: 854  KINCP------------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
            ++               +  I++ G ID     + NI + +YKT +    +IE +   + 
Sbjct: 1154 ELPYKEIYPQLPDASDYEDKILLQGVIDCYFEEEDNIVLIDYKTDYVPDGDIEVMKEKYK 1213

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYV-SEPKVFII 935
             Q+S Y + L+     K +    IY+ S   +  +
Sbjct: 1214 LQISYYSRALE-MLTLKRVKERYIYLFSTGDILEM 1247


>gi|218896177|ref|YP_002444588.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842]
 gi|251764501|sp|B7IL84|ADDA_BACC2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|218544151|gb|ACK96545.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842]
          Length = 1241

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          +    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADVALLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + + ++   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVAFQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFTEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++D+  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEDLATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTNWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +           K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSYRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRTPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I+
Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1220 QHPVKEKCLYFFDGNHVVNIEE 1241


>gi|228899819|ref|ZP_04064065.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
            4222]
 gi|228859838|gb|EEN04252.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
            4222]
          Length = 1166

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          +    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADVALLGTLSSAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + + ++   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVAFQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFTEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 490  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++D+  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEDLATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTNWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +           K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSYRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRTPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166


>gi|326938868|gb|AEA14764.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
            chinensis CT-43]
          Length = 1241

 Score =  410 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 162/1043 (15%), Positives = 333/1043 (31%), Gaps = 147/1043 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ---------ASQTQCIEERF 66
            + +D+          I K   L+M    P    + +TLQ          ++  +     +
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAP--RIETLQADVVLLGTLSSAARESWTSLY 282

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKM 119
              + +         +K+   +++ K+   L+ K K    +  +                M
Sbjct: 283  EAMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDM 342

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174
                   + L K     ++  K+   ++DF DL      +L ++        + +  +  
Sbjct: 343  HPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYR 402

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP
Sbjct: 403  NKFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEP 455

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292
               L + +   +  +  G K   I+L  +FRS  ++L   + +F     E    +  D+ 
Sbjct: 456  GLFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDAD 512

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              ++  +S             +    +   + ++           +   A + AR +A  
Sbjct: 513  AELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQR 563

Query: 353  ISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I  M+ +     + K    R +Q +D ++L+R                    I V  +  
Sbjct: 564  IKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLA 619

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---- 465
                +   +  +M + R I +   D+    +L+SP+   +++D+  +     +       
Sbjct: 620  TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEDLATLRAHGKKGSFYEVM 679

Query: 466  ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521
               +     +       K +     +      A+  S  D    + G             
Sbjct: 680  SSFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPA 739

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576
            G +    L    +   + E  S+  L   +  +E+           RA     + VRIMT
Sbjct: 740  GKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMT 799

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE PVVF+   G +  +   +K+  +               + K        + 
Sbjct: 800  IHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIK 859

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677
            + +K     E  R+LYV +TRA ++LI+      +N++                   ++ 
Sbjct: 860  RKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAG 919

Query: 678  QRTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINK 706
               + D +  S +     + +                                      K
Sbjct: 920  ASCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEK 979

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             E +               +EE   +L+ +           K  + E      S   +  
Sbjct: 980  QELLEALREKKAVPLQSERKEEVYDRLLWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDN 1039

Query: 767  K-----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAK 814
                                      RG  +H ++Q +        +          N +
Sbjct: 1040 AFIKKLRVPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITAETLQEQIAGMVNKE 1099

Query: 815  LWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
            L   ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I
Sbjct: 1100 LLTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETI 1159

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S 
Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL 1219

Query: 916  PNKSLV-CLLIYVSEPKVFIIPQ 937
                +    L +     V  I +
Sbjct: 1220 -QHPVKEKCLYFFDGNHVVNIEE 1241


>gi|297543796|ref|YP_003676098.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp.
            mathranii str. A3]
 gi|296841571|gb|ADH60087.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp.
            mathranii str. A3]
          Length = 1230

 Score =  410 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 153/1005 (15%), Positives = 344/1005 (34%), Gaps = 136/1005 (13%)

Query: 35   VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT------QKFTPQKNIITQE 88
              + +++       +A  L++    +  EE    +++          +   P+      +
Sbjct: 241  AEIGLQSYLDNFEIEAGNLEKLLDCENWEEFRKQINAIKFDRLPRAGKDADPKVKEEVTK 300

Query: 89   INKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            I  +     ++++     D+  KI +       +    A + L    +  Y + K++  +
Sbjct: 301  IRNEVKAKIKEIRNKFFSDDIEKIEEEIKVL--YPIMKALVDLILLFDKKYADKKREKGI 358

Query: 147  LDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            +DF D+      +L + D       + +     ++   I +DE QD++LIQ  ++ ++  
Sbjct: 359  IDFNDIEHFALKILTEVDEKGKMKPSEVALMYREKFQEIFVDEYQDSNLIQEVILSTIAR 418

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +              F VGD KQSIY F  A P     +      +  +       I L 
Sbjct: 419  EDT---------PNRFMVGDVKQSIYRFRQANPYIFFEKYNTYSSKEEDKN---KKILLY 466

Query: 262  LSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQV------GTVQLWEQ 313
             +FRS + I+  V+ +F      N   +       + + +            G V++   
Sbjct: 467  KNFRSRSQIIDAVNFIFKKIMSKNVGEIDYTDEEKLNYGADFGTPPLGAIVGGPVEIHLI 526

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-------FSNG 366
               + + +   ++E      +      +    AR ++  I  ++             +  
Sbjct: 527  ---EKNDEIPEEEEVEVYEEEEEEVIDNIQGEARVVSQRIKELVNQSERGIFMVYDKNLK 583

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R ++ +DI++L+R    T     +      +  I    +      +   IK +++L +
Sbjct: 584  NYRPVEYRDIVILLRA---TERWAPVFLEELINAGIPAFADTGTGYFETTEIKTIISLLQ 640

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQH 483
             I +   D+  + +L+SP+F+F+ +++  I       +T+YE ++K A        K   
Sbjct: 641  VIDNPMQDIPLLAVLRSPIFSFTPEELIDI-RLEEPNKTIYEALKKAAQRQDELGQKIVF 699

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQN 542
             +K + +    A +    +F   +               G +    L        + E+ 
Sbjct: 700  FLKSLKKWQEKAIYMPVDEFLWYLYQDTGYYAYVGAMPQGVQRQANLRILFERAKQYEET 759

Query: 543  SYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            S+  L   I+ +             +    N N VRIM++H +KGLE PVV +   G Q 
Sbjct: 760  SFKGLFNFINFVTRLKVSSGDMGSAKIVGENENVVRIMSIHKSKGLEFPVVIVAGLGKQF 819

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                  + +     L   P    +  +    + +   +   +K  +  E  R+LYV +TR
Sbjct: 820  NLKDLSQSVLYHHLLGLGPEFVDFKRRISYPSIVKEAIKNKIKLESLSEEMRVLYVALTR 879

Query: 658  ASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIK 699
            A ++LI+        EK                      +++ D +  +      +K ++
Sbjct: 880  AKEKLILVGSVKDIKEKVKKWCNIAMLGNKVPEYEVLKGKSYIDWIGPAVIKHPDLKPLR 939

Query: 700  LTNSIN----KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK------------- 742
                +     +++   ++      ++  +++E+  ++    +K+                
Sbjct: 940  DFAHVQCAALEEDRSQWQVRIWDKKDVIIDKEKAEEETSFLEKLKDINLNSPSSEFYDEV 999

Query: 743  -----LFSPIKNDINEPYILNPSTID-------------------TKGKTNLESLLSDNQ 778
                    P +   + P  L+ + I                                   
Sbjct: 1000 ARRLNYVYPYEKACHLPAKLSVTEIKRILNEEVIDEDTTSIFEKTVLKTPAFLEERKGLT 1059

Query: 779  TFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLEN 834
               +G+++H ++Q +     L     K  I +   +   +    + K + +  I    + 
Sbjct: 1060 AVEKGVVMHLVMQKLDLNGDLTAEGIKKQIKNMVDRE--ILTEAQAKEVDVKKIEAFFKT 1117

Query: 835  PMMTTAM-SCDSYSEVSVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFE 882
            P+    + S +   EV    K            +   + I + G +D     +  I + +
Sbjct: 1118 PLGMRMLNSQNVRREVPFHIKFKSTEVYKDLPEDYENEFIAVQGIVDCFFEEEGEIVLVD 1177

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            YKT +   + +E     +  Q+ +Y K L+     K +    IY+
Sbjct: 1178 YKTDYVTEETLEATKEKYKVQIELYGKALEKI-TGKKVKEKYIYL 1221


>gi|163939035|ref|YP_001643919.1| recombination helicase AddA [Bacillus weihenstephanensis KBAB4]
 gi|251764507|sp|A9VJ02|ADDA_BACWK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|163861232|gb|ABY42291.1| Recombination helicase AddA [Bacillus weihenstephanensis KBAB4]
          Length = 1241

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 167/1042 (16%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++       + 
Sbjct: 225  LLEDVKFQLETAEKHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-GSWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDVVKRVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+DF            LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDFES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +  +  G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 565  KAMVDSGYAVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +   K +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEQELHDKLEWFYKLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGNIPGEIYEYSASWKVEVVEGKDLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +           K  + E      S   +   
Sbjct: 981  ELLEALRDKKAVPLESERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---NFITSYCTKNA 813
                                     RG  +H ++Q +        +     I     K  
Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIARMVNKEL 1100

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
              +   E +  +  +    ++ +    ++  S   EV  +  ++             + I
Sbjct: 1101 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESI 1159

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S 
Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPTLEDRYKVQLSLYAKALEKSL 1219

Query: 916  PNKSLVCLLIYVSEPKVFIIPQ 937
             +      L +     V  I +
Sbjct: 1220 KHPVKEKCLYFFDGNHVVNIEE 1241


>gi|229166075|ref|ZP_04293837.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH621]
 gi|228617384|gb|EEK74447.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH621]
          Length = 1166

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/1042 (15%), Positives = 333/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++       + 
Sbjct: 150  LLEDVKFQLETAEKHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-GSWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++       ++ +  +   
Sbjct: 269  PVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEDGEMKASAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +  +  G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGKGNIPGEIYEYSASWKVEVVEGKDLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM E           K  + E      S   +   
Sbjct: 906  ELLEALRDKKAVPLESERKEEVYDRLMWEYGYADATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---NFITSYCTKNA 813
                                     RG  +H ++Q +        +     I     K  
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIARMVNKEL 1025

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
              +   E +  +  +    ++ +    ++  S   EV  +  ++             + I
Sbjct: 1026 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESI 1084

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S 
Sbjct: 1085 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSL 1144

Query: 916  PNKSLVCLLIYVSEPKVFIIPQ 937
             +      L +     V  I +
Sbjct: 1145 KHPVKEKCLYFFDGNHVVNIDE 1166


>gi|228938359|ref|ZP_04100970.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar berliner ATCC 10792]
 gi|228971238|ref|ZP_04131867.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar thuringiensis str. T01001]
 gi|228977847|ref|ZP_04138229.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis Bt407]
 gi|228781865|gb|EEM30061.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis Bt407]
 gi|228788473|gb|EEM36423.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar thuringiensis str. T01001]
 gi|228821305|gb|EEM67319.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar berliner ATCC 10792]
          Length = 1166

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/1043 (15%), Positives = 336/1043 (32%), Gaps = 147/1043 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ---------ASQTQCIEERF 66
            + +D+          I K   L+M    P    + +TLQ          ++  +     +
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAP--RIETLQADVVLLGTLSSAARESWTSLY 207

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKM 119
              + +         +K+   +++ K+   L+ K K    +  +                M
Sbjct: 208  EAMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDM 267

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174
                   + L K     ++  K+   ++DF DL      +L ++        + +  +  
Sbjct: 268  HPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYR 327

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP
Sbjct: 328  NKFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEP 380

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292
               L + +   +  +  G K   I+L  +FRS  ++L   + +F     E    +  D+ 
Sbjct: 381  GLFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDAD 437

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              ++  +S             +    +   + ++           +   A + AR +A  
Sbjct: 438  AELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQR 488

Query: 353  ISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I  M+ +     + K    R +Q +D ++L+R     P I    +       I V  +  
Sbjct: 489  IKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLA 544

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---- 465
                +   +  +M + R I +   D+    +L+SP+   +++D+  +     +       
Sbjct: 545  TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEDLATLRAHGKKGSFYEVM 604

Query: 466  ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521
               +     +       K +     +      A+  S  D    + G             
Sbjct: 605  SSFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPA 664

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576
            G +    L    +   + E  S+  L   +  +E+           RA     + VRIMT
Sbjct: 665  GKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMT 724

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE PVVF+   G +  +   +K+  +               + K        + 
Sbjct: 725  IHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIK 784

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677
            + +K     E  R+LYV +TRA ++LI+      +N++                   ++ 
Sbjct: 785  RKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAG 844

Query: 678  QRTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINK 706
               + D +  S +     + +                                      K
Sbjct: 845  ASCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEK 904

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             E +               +EE   +L+ +           K  + E      S   +  
Sbjct: 905  QELLEALREKKAVPLQSERKEEVYDRLLWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDN 964

Query: 767  K-----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAK 814
                                      RG  +H ++Q +        +          N +
Sbjct: 965  AFIKKLRVPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITAETLQEQIAGMVNKE 1024

Query: 815  LWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
            L   ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I
Sbjct: 1025 LLTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETI 1084

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S 
Sbjct: 1085 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL 1144

Query: 916  PNKSLV-CLLIYVSEPKVFIIPQ 937
                +    L +     V  I +
Sbjct: 1145 -QHPVKEKCLYFFDGNHVVNIEE 1166


>gi|206967662|ref|ZP_03228618.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134]
 gi|206736582|gb|EDZ53729.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134]
          Length = 1241

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A+  +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 565  KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   S++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1220 QHPVKEKYLYFFDGNHVVNIEE 1241


>gi|229132031|ref|ZP_04260894.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST196]
 gi|228651431|gb|EEL07403.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST196]
          Length = 1166

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/1041 (15%), Positives = 331/1041 (31%), Gaps = 143/1041 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K    +M    P          L    TL  A++       + 
Sbjct: 150  LLEDVKFQLETAEKHIRKATEFAMLPDGPAPRVETLQADLALLGTLSSAAR-GSWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEGGEMKPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +  +  G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 490  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGNIPGEIYEYSASWKVEVVEGKDLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM E           K  + E      S   +   
Sbjct: 906  ELLEALRDKKAVPLESERKEEVYDRLMWEYGYADATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +       +  N +L
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIASMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  ++             + I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSLK 1145

Query: 917  NKSLVCLLIYVSEPKVFIIPQ 937
            +      L +     V  I +
Sbjct: 1146 HPVKEKCLYFFDGNHVVNIDE 1166


>gi|42780319|ref|NP_977566.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987]
 gi|81569872|sp|Q73C23|ADDA_BACC1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|42736238|gb|AAS40174.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987]
          Length = 1241

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/1043 (15%), Positives = 330/1043 (31%), Gaps = 147/1043 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707
              + D +  S +     +                                        K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEILLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813
                                     RG  +H ++Q +     + E   +  I     K  
Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQIAGMVNKEL 1100

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
              +   E +  +  +    ++ +    ++  S   EV  +  +              + I
Sbjct: 1101 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESI 1159

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S 
Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIAGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL 1219

Query: 916  PNKSLV-CLLIYVSEPKVFIIPQ 937
                +    L +     V  I +
Sbjct: 1220 -QHPVKEKCLYFFDGNHVVKIEE 1241


>gi|228919962|ref|ZP_04083316.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar huazhongensis BGSC 4BD1]
 gi|228839675|gb|EEM84962.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar huazhongensis BGSC 4BD1]
          Length = 1166

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/1041 (15%), Positives = 330/1041 (31%), Gaps = 143/1041 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQ--CIEERFSL 68
            + +D+          I K   L+M    P     T+   A  L   S          +  
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADAALLGTLSSAARESWTSLYEA 209

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121
            + +         +K+   ++I K+   L+ K K    +  +                M  
Sbjct: 210  MQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMHP 269

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176
                 + L K     ++  K+   ++DF DL      +L +         + +  +   +
Sbjct: 270  VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEPSENGEMNPSAVALQYRNK 329

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP  
Sbjct: 330  FAEVLVDEYQDTNFVQESIIKFVTKDSES-------AGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294
             L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D    
Sbjct: 383  FLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDVDAE 439

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            ++  ++             +    +   + ++           +   A + AR +A  I 
Sbjct: 440  LKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRIK 490

Query: 355  NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             M+ +     + K    R +Q +D ++L+R     P I    +       I V  +    
Sbjct: 491  AMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 546

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465
              +   +  +M + R I +   D+    +L+SP+   +++++  +     +         
Sbjct: 547  YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSS 606

Query: 466  -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
             +     +       K +     +      A+  S  D    + G             G 
Sbjct: 607  FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578
            +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+H
Sbjct: 667  QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE PVVF+   G +  +   +K+  +               + K        + + 
Sbjct: 727  KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679
            +K     E  R+LYV +TRA ++LI+      +N++                   ++   
Sbjct: 787  MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 846

Query: 680  TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708
             + D +  S +     + +                                      K E
Sbjct: 847  CYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQE 906

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767
             +               +EE   +LM +           K  + E      S   +    
Sbjct: 907  LLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAF 966

Query: 768  ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLW 816
                                    RG  +H ++Q +        +          N +L 
Sbjct: 967  IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKELL 1026

Query: 817  PAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIII 864
              ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I++
Sbjct: 1027 TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILV 1086

Query: 865  SGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPN 917
             G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S   
Sbjct: 1087 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL-Q 1145

Query: 918  KSLV-CLLIYVSEPKVFIIPQ 937
              +    L +     +  I +
Sbjct: 1146 HPVKEKCLYFFDGNHIVKIEE 1166


>gi|229189331|ref|ZP_04316351.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 10876]
 gi|228594125|gb|EEK51924.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 10876]
          Length = 1166

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 329/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A+  +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 490  KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGS 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +           K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWKGNSGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166


>gi|228964186|ref|ZP_04125309.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar sotto str. T04001]
 gi|228795536|gb|EEM43020.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar sotto str. T04001]
          Length = 1166

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/1041 (15%), Positives = 330/1041 (31%), Gaps = 143/1041 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQ--CIEERFSL 68
            + +D+          I K   L+M    P     T+   A  L   S          +  
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADAALLGTLSSAARESWTSLYEA 209

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121
            + +         +K+   ++I K+   L+ K K    +  +                M  
Sbjct: 210  MQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMQP 269

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176
                 + L K     ++  K+   ++DF DL      +L +         + +  +   +
Sbjct: 270  VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEPSENGEMNPSAVALQYRNK 329

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP  
Sbjct: 330  FAEVLVDEYQDTNFVQESIIKFVTKDSES-------AGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294
             L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D    
Sbjct: 383  FLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDVEAE 439

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            ++  ++             +    +   + ++           +   A + AR +A  I 
Sbjct: 440  LKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRIK 490

Query: 355  NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             M+ +     + K    R +Q +D ++L+R     P I    +       I V  +    
Sbjct: 491  AMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 546

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465
              +   +  +M + R I +   D+    +L+SP+   +++++  +     +         
Sbjct: 547  YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSS 606

Query: 466  -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
             +     +       K +     +      A+  S  D    + G             G 
Sbjct: 607  FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578
            +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+H
Sbjct: 667  QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE PVVF+   G +  +   +K+  +               + K        + + 
Sbjct: 727  KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679
            +K     E  R+LYV +TRA ++LI+      +N++                   ++   
Sbjct: 787  MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 846

Query: 680  TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708
             + D +  S +     + +                                      K E
Sbjct: 847  CYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQE 906

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767
             +               +EE   +LM +           K  + E      S   +    
Sbjct: 907  LLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNAF 966

Query: 768  ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLW 816
                                    RG  +H ++Q +        +          N +L 
Sbjct: 967  IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKELL 1026

Query: 817  PAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIII 864
              ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I++
Sbjct: 1027 TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETILV 1086

Query: 865  SGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPN 917
             G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S   
Sbjct: 1087 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL-Q 1145

Query: 918  KSLV-CLLIYVSEPKVFIIPQ 937
              +    L +     +  I +
Sbjct: 1146 HPVKEKCLYFFDGNHIVKIEE 1166


>gi|30019293|ref|NP_830924.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579]
 gi|296501840|ref|YP_003663540.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171]
 gi|81580749|sp|Q81GP9|ADDA_BACCR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|29894836|gb|AAP08125.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579]
 gi|296322892|gb|ADH05820.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171]
          Length = 1241

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 331/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          +    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 565  KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   S++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +           K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I+
Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1220 QHPVKEKCLYFFDGNHVVNIEE 1241


>gi|196036255|ref|ZP_03103654.1| ATP-dependent nuclease, subunit A [Bacillus cereus W]
 gi|195991230|gb|EDX55199.1| ATP-dependent nuclease, subunit A [Bacillus cereus W]
          Length = 1241

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSAAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R ++ +D ++L+R     P I    +       I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  TFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + +    +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRILAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|218233217|ref|YP_002365926.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264]
 gi|251764502|sp|B7HGP9|ADDA_BACC4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|218161174|gb|ACK61166.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264]
          Length = 1241

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A+  +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 565  KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   S++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKKVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1220 QHPVKEKCLYFFDGNHVVNIEE 1241


>gi|167635407|ref|ZP_02393721.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442]
 gi|254740248|ref|ZP_05197940.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Kruger B]
 gi|167529235|gb|EDR91988.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442]
          Length = 1241

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R ++ +D ++L+R                    I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLKLGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEILQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|152974673|ref|YP_001374190.1| recombination helicase AddA [Bacillus cereus subsp. cytotoxis NVH
            391-98]
 gi|251764504|sp|A7GM37|ADDA_BACCN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|152023425|gb|ABS21195.1| Recombination helicase AddA [Bacillus cytotoxicus NVH 391-98]
          Length = 1242

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K + L+M    P        T L   +TL  A++ +     + 
Sbjct: 226  LLEDVKFQLETATEHIRKAMELAMLPDGPAPRMETLQTDLVLLETLSHAAR-KSWTSVYE 284

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             +           +K+   ++I K+   L+ K K    +  +               +M 
Sbjct: 285  AMQHVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQEMH 344

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K  +  ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 345  PVLGKLVQLVKEFSNRFQAIKRDKGMVDFTDLEHFCLQILSEQGEDGELRPSPVALQYRN 404

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 405  RFAEVLVDEYQDTNFVQESIIKLVTKDS-------EQEGNLFMVGDVKQSIYRFRLAEPG 457

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 458  LFLGKYKRFTQEGLEGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIEYDADA 514

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR IA  I
Sbjct: 515  ELKLGASYPEGEDVAAELLCIHQSEEEVLDGEEG---------EEVEKAQLEARLIAQRI 565

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V      
Sbjct: 566  KAMVDSGYTVYDRKTNEMRQVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYAELAT 621

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 622  GYFEATEVNIMMNVFRVIDNPVQDIPLAAVLRSPIVGLNDEELAMLRAHAKKGSFYEVMR 681

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    +               G
Sbjct: 682  SFLRGAPLEGGKELHEKLKWFYHLLQGWREFARQQSLSDLIWKVYRETGYYDFVGGLPGG 741

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 742  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 801

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +++  +               + K        + +
Sbjct: 802  HKSKGLEFPVVFVAGLGRRFNTQDLMQRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 861

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K+    E  R+LYV +TRA ++LI+        ++                   +++ 
Sbjct: 862  KMKRELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEMEKWLDTREHTEWLLPDYVRASA 921

Query: 679  RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707
              + D +  S +     +                                        K 
Sbjct: 922  SCYLDWIAPSLYRHRDSEILLELGQGTIPNEIYEYDTSWKVEFVDGKTLLAPEPAQEEKQ 981

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +L  + +         K  + E      S   +   
Sbjct: 982  ELLEALREKKAVPLESERKDEVYNRLTWKYEYEDATLQRAKQSVTEIKRNYQSEDGSDTA 1041

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        ++         N ++
Sbjct: 1042 FIQKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKQSITIESIQEQIAKMVNKEI 1101

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  I    E+ +    +   S   EV  +  ++            ++ I+
Sbjct: 1102 LTFEQAEEISVERIVAFFESHLGKRVLEAKSVEREVPFTMMLSAKEAYQNWQGKSEETIL 1161

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +      I + ++KT       P   +         +  QLS+Y K L+ +  
Sbjct: 1162 VQGVIDCMIEEDDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKTL- 1220

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1221 QHPVKEKCLYFFDGNHVITIEE 1242


>gi|228906866|ref|ZP_04070735.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
            200]
 gi|228852870|gb|EEM97655.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis IBL
            200]
          Length = 1166

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/1042 (15%), Positives = 335/1042 (32%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          +    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADVALLGTLSSAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIEQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++D+  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEDLATLRAHGKKGLFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +       F   K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATFYRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166


>gi|254725483|ref|ZP_05187265.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A1055]
          Length = 1241

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/1042 (15%), Positives = 333/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R ++ +D ++L+R     P I    +       I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEILQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|49480014|ref|YP_035378.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
            konkukian str. 97-27]
 gi|81613917|sp|Q6HM43|ADDA_BACHK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|49331570|gb|AAT62216.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar
            konkukian str. 97-27]
          Length = 1241

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREYSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + +    +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|30261249|ref|NP_843626.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames]
 gi|47526411|ref|YP_017760.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49184081|ref|YP_027333.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. Sterne]
 gi|65318520|ref|ZP_00391479.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
            (contains helicase and exonuclease domains) [Bacillus
            anthracis str. A2012]
 gi|165873114|ref|ZP_02217732.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488]
 gi|167640214|ref|ZP_02398480.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193]
 gi|170688037|ref|ZP_02879249.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465]
 gi|177655492|ref|ZP_02936935.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174]
 gi|190566724|ref|ZP_03019641.1| ATP-dependent nuclease, subunit A [Bacillus anthracis Tsiankovskii-I]
 gi|227816013|ref|YP_002816022.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684]
 gi|229601554|ref|YP_002865672.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248]
 gi|254682690|ref|ZP_05146551.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str.
            CNEVA-9066]
 gi|254734108|ref|ZP_05191821.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Western
            North America USA6153]
 gi|254753588|ref|ZP_05205624.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Vollum]
 gi|254758685|ref|ZP_05210712.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Australia
            94]
 gi|81583096|sp|Q81TW1|ADDA_BACAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|30254863|gb|AAP25112.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames]
 gi|47501559|gb|AAT30235.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49178008|gb|AAT53384.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Sterne]
 gi|164711168|gb|EDR16727.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488]
 gi|167511815|gb|EDR87195.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193]
 gi|170667932|gb|EDT18683.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465]
 gi|172080091|gb|EDT65187.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174]
 gi|190562276|gb|EDV16244.1| ATP-dependent nuclease, subunit A [Bacillus anthracis Tsiankovskii-I]
 gi|227003890|gb|ACP13633.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684]
 gi|229265962|gb|ACQ47599.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248]
          Length = 1241

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R ++ +D ++L+R                    I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEILQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|229068796|ref|ZP_04202092.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus F65185]
 gi|229078429|ref|ZP_04210990.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock4-2]
 gi|228704851|gb|EEL57276.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock4-2]
 gi|228714304|gb|EEL66183.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus F65185]
          Length = 1166

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A+  +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 490  KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   S++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166


>gi|289577484|ref|YP_003476111.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9]
 gi|289527197|gb|ADD01549.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9]
          Length = 1230

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 157/1005 (15%), Positives = 351/1005 (34%), Gaps = 136/1005 (13%)

Query: 35   VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ---EINK 91
              + +++       +A  L++  + +  EE    +++    +     K+   +   E+ K
Sbjct: 241  AEIGLQSYLDNFEIEAGNLEKLLECENWEEFRKQINAIKFDRLPKAGKDADPKVKEEVTK 300

Query: 92   KSPDLKEKLKKSQ-----DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
               ++K K+K+ +     D+  KI +       +    A + L    +  Y + K++  +
Sbjct: 301  IRNEVKAKIKEIRNKFFSDDIEKIEEEIKVL--YPIMKALVDLILLFDKKYADKKREKGI 358

Query: 147  LDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            +DF D+      +L + D       + +     ++   I +DE QD++LIQ  ++ ++  
Sbjct: 359  IDFNDIEHFALKILTEVDEKGKMKPSEVALMYREKFQEIFVDEYQDSNLIQEVILSTIAR 418

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +              F VGD KQSIY F  A P     +      +  +       I L 
Sbjct: 419  EDT---------PNRFMVGDVKQSIYRFRQANPYIFFEKYNTYSSKEEDKN---KKILLY 466

Query: 262  LSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQV------GTVQLWEQ 313
             +FRS + I+  V+ +F      N   +       + + +            G V++   
Sbjct: 467  KNFRSRSQIIDAVNFIFKKIMSKNVGEIDYTDEEKLNYGADFGTPPLGAIVGGPVEIHLI 526

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-------FSNG 366
               + + + + ++E      +      +    AR  +  I  ++             +  
Sbjct: 527  ---EKNDEISEEEEVEVYEEEEEEVIDNIQGEARVASQRIKELVNQSERGIFMVYDKNLK 583

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R ++ +DI++L+R    T     +      +  I    +      +   IK +++L +
Sbjct: 584  NYRPVEYRDIVILLRA---TERWAPVFLEELINAGIPAFADTGTGYFETTEIKTIISLLQ 640

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQH 483
             I +   D+  + +L+SP+F+F+ +++  I       +T+YE ++K A        K   
Sbjct: 641  VIDNPMQDIPLLAVLRSPIFSFTPEELIDI-RLEEPNKTIYEALKKAAQRQDELGQKIVF 699

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQN 542
             +K + +    A +    +F   +               G +    L        + E+ 
Sbjct: 700  FLKSLKKWQEKAIYMPVDEFLWYLYQDTGYYAYVGAMPQGVQRQANLRILFERAKQYEET 759

Query: 543  SYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            S+  L   I+ +             +    N N VRIM++H +KGLE PVV +   G Q 
Sbjct: 760  SFKGLFNFINFINRLKVSSGDMGSAKIVGENENVVRIMSIHKSKGLEFPVVIVAGLGKQF 819

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                  + +     L   P    +  +    + +   +   +K  +  E  R+LYV +TR
Sbjct: 820  NLKDLSQSVLYHHLLGLGPEFVDFKRRISYPSIVKEAIKNKIKLESLSEEMRVLYVALTR 879

Query: 658  ASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIK 699
            A ++LI+        EK                      +++ D +  +      +K ++
Sbjct: 880  AKEKLILVGSVKDIKEKVKKWCNIAMLGNKVPEYEVLKGKSYIDWIGPAVIKHPDLKPLR 939

Query: 700  LTNSIN----KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK------------- 742
                +     +++   ++      ++  +++E+  ++    +K+                
Sbjct: 940  DFAHVQCAALEEDRSQWQVRIWDKKDVIIDKEKAEEETSFLEKLKDIDLNSPSSEFYDEV 999

Query: 743  -----LFSPIKNDINEPYILNPSTID-------------------TKGKTNLESLLSDNQ 778
                    P +   + P  L+ + I                                   
Sbjct: 1000 ARRLNYVYPYEKACHLPAKLSVTEIKRILNEEVIDEDTTSIFEKTVLKTPAFLEERKGLT 1059

Query: 779  TFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLEN 834
               +G+++H ++Q +     L     K  I +   +   +    + K + +  I    + 
Sbjct: 1060 AVEKGVVMHLVMQKLDLNGDLTAEGIKKQIKNMVDRE--ILTEAQAKEVDVKKIEAFFKT 1117

Query: 835  PMMTTAM-SCDSYSEVSVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFE 882
            P+    + S +   EV    K+           +   + I + G +D     +  I + +
Sbjct: 1118 PLGMRMLNSQNVRREVPFHIKLKSTEVYKDLPEDYENEFIAVQGIVDCFFEEEGEIVLVD 1177

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            YKT +   + +E     +  Q+ +Y K L+     K +    IY+
Sbjct: 1178 YKTDYVTEETLEATKEKYKVQIELYGKALEKI-TGKKVKEKYIYL 1221


>gi|196044179|ref|ZP_03111415.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108]
 gi|196024818|gb|EDX63489.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108]
          Length = 1241

 Score =  407 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/1042 (15%), Positives = 329/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHHDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + +    +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|229126550|ref|ZP_04255564.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-Cer4]
 gi|229143847|ref|ZP_04272266.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST24]
 gi|228639608|gb|EEK96019.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST24]
 gi|228656939|gb|EEL12763.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-Cer4]
          Length = 1166

 Score =  407 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/1042 (15%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          +    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   S++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +           K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166


>gi|228951606|ref|ZP_04113710.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar kurstaki str. T03a001]
 gi|228808067|gb|EEM54582.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar kurstaki str. T03a001]
          Length = 1166

 Score =  407 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 331/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          +    TL  A+Q +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAQ-ESWTSLYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 490  KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   S++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166


>gi|206976508|ref|ZP_03237414.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97]
 gi|222094863|ref|YP_002528923.1| ATP-dependent nuclease, subunit a [Bacillus cereus Q1]
 gi|251764505|sp|B9ITE9|ADDA_BACCQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|206745191|gb|EDZ56592.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97]
 gi|221238921|gb|ACM11631.1| ATP-dependent nuclease, subunit A [Bacillus cereus Q1]
          Length = 1241

 Score =  407 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 166/1043 (15%), Positives = 332/1043 (31%), Gaps = 147/1043 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEEGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707
              + D +  S +     +                                        K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLESERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813
                                     RG  +H ++Q +     + E   +  I     K  
Sbjct: 1041 FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQIAGMVNKEL 1100

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
              +   E +  +  +    ++ +    ++  S   EV  +  +              + I
Sbjct: 1101 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESI 1159

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S 
Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL 1219

Query: 916  PNKSLV-CLLIYVSEPKVFIIPQ 937
                +    L +     V  I +
Sbjct: 1220 -QHPVKEKCLYFFDGNHVVKIEE 1241


>gi|196037643|ref|ZP_03104954.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99]
 gi|196031885|gb|EDX70481.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99]
          Length = 1241

 Score =  407 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 161/1042 (15%), Positives = 329/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  TFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPGEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + +    +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|228957511|ref|ZP_04119263.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pakistani str. T13001]
 gi|228802103|gb|EEM48968.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pakistani str. T13001]
          Length = 1166

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/1042 (15%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          +    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAMVESGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   S++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +           K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166


>gi|228913817|ref|ZP_04077442.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pulsiensis BGSC 4CC1]
 gi|228845756|gb|EEM90782.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pulsiensis BGSC 4CC1]
          Length = 1240

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 163/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 224  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 282

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 283  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 342

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 343  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 402

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 403  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 455

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 456  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 512

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 513  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 563

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 564  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 619

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 620  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 679

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 680  TFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 739

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 740  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 799

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 800  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 859

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 860  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 919

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 920  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 979

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 980  ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1039

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1040 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1099

Query: 816  WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + +    +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1100 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1159

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1160 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1218

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1219 QHPVKEKCLYFFDGNHVIKVEE 1240


>gi|229010530|ref|ZP_04167732.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides DSM 2048]
 gi|228750728|gb|EEM00552.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides DSM 2048]
          Length = 1166

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/1042 (15%), Positives = 333/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++       + 
Sbjct: 150  LLEDVKFQLETAEKHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-GSWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEGGEMKPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +  +  G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  + +     + +                                      K 
Sbjct: 846  SCYLDWIAPALYRHRDSEMLLELGQGNIPGEIYEYSASWKVEVVEGKDLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM E    +      K  + E      S   +   
Sbjct: 906  ELLEALRDKKAVPLESERKEEVYDRLMWEYGYAEATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---NFITSYCTKNA 813
                                     RG  +H ++Q +        +     I     K  
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIARMVNKEL 1025

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
              +   E +  +  +    ++ +    ++  S   EV  +  ++             + I
Sbjct: 1026 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESI 1084

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT            Q    +   +  QLS+Y K L+ S 
Sbjct: 1085 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFLGGFDQAKPILEDRYKVQLSLYAKALEKSL 1144

Query: 916  PNKSLVCLLIYVSEPKVFIIPQ 937
             +      L +     V  I +
Sbjct: 1145 KHPVKEKSLYFFDGNHVVNIDE 1166


>gi|229149444|ref|ZP_04277680.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1550]
 gi|228634086|gb|EEK90679.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1550]
          Length = 1166

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/1042 (15%), Positives = 333/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A+  +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   S++++  +     +        
Sbjct: 546  GYFEATEVTIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGNSGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKDKCLYFFDGNHVVNIEE 1166


>gi|229028911|ref|ZP_04185012.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1271]
 gi|228732482|gb|EEL83363.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1271]
          Length = 1166

 Score =  406 bits (1043), Expect = e-111,   Method: Composition-based stats.
 Identities = 164/1042 (15%), Positives = 331/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQ--CIEERFSL 68
            + +D+          I K   L+M    P     T+   A  L + S          +  
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADAVLLGKLSSAARESWTSVYEA 209

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121
            + +         +K+   +++ K+   L+ K K    +  +                M  
Sbjct: 210  MQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMHP 269

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176
                 + L K     ++  K+   ++DF DL      +L ++        + +  +   +
Sbjct: 270  VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAVALQYRNK 329

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP  
Sbjct: 330  FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294
             L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+   
Sbjct: 383  FLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 439

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            ++  +S             +    +   + ++           +   A + AR +A  I 
Sbjct: 440  LKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRIK 490

Query: 355  NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             M+ +     + K    R +Q +D ++L+R                    I V  +    
Sbjct: 491  AMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLATG 546

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465
              +   +  +M + R I +   D+    +L+SP+   +++++  +     +         
Sbjct: 547  YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSS 606

Query: 466  -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
             +     +       K +     +      A+  S  D    + G             G 
Sbjct: 607  FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578
            +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+H
Sbjct: 667  QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE PVVF+   G +  +   +K+  +               + K        + + 
Sbjct: 727  KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679
            +K     E  R+LYV +TRA ++LI+      +N++                   ++   
Sbjct: 787  MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 846

Query: 680  TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708
             + D +  S +     + +                                      K E
Sbjct: 847  CYLDWIAPSLYRHRDSEMLLELGQGSIPGEIYDYDTSWKVEVVDGGTLLAPEPVQEEKQE 906

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767
             +               +EE   +LM +    +      K  + E      S   +    
Sbjct: 907  LLEALREKKAVPLQSERKEEVYDRLMWKYGYDEATSHRAKQSVTEIKRNYQSEEGSDNAF 966

Query: 768  ----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAK 814
                                    RG  +H ++Q +     + E   +  I+    K   
Sbjct: 967  IKKMRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQISGMVNKELL 1026

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
             +   E +  +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1027 TFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKEKCLYFFDGNHVVKIEE 1166


>gi|228932517|ref|ZP_04095398.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar andalousiensis BGSC 4AW1]
 gi|228827207|gb|EEM72960.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar andalousiensis BGSC 4AW1]
          Length = 1166

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 333/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R ++ +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEILQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1145 QHPVKEKCLYFFDGNHVIKVEE 1166


>gi|301052778|ref|YP_003790989.1| ATP-dependent nuclease subunit A [Bacillus anthracis CI]
 gi|300374947|gb|ADK03851.1| ATP-dependent nuclease, subunit A [Bacillus cereus biovar anthracis
            str. CI]
          Length = 1241

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + +    +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|255523282|ref|ZP_05390252.1| recombination helicase AddA [Clostridium carboxidivorans P7]
 gi|255512936|gb|EET89206.1| recombination helicase AddA [Clostridium carboxidivorans P7]
          Length = 1226

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 157/966 (16%), Positives = 308/966 (31%), Gaps = 136/966 (14%)

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
            +F  L            K    +  +     + E  +    +   +       +M+    
Sbjct: 277  QFEKLPVKRNKDADKEAKEKSKKIRDDVKKKITEISEDIFLKMSSMGKDLK--EMYPKMK 334

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINH 179
            +   +    N  Y   K++  ++DF D+     ++L           + I  +  Q+   
Sbjct: 335  SLGKIVMEFNERYGAKKRERGLVDFNDIEHFCLNILIDTKENGDITPSKIALEYRQKFEE 394

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ILIDE QD++ +Q  ++ ++        +  +     F VGD KQSIY F  A+P+  L 
Sbjct: 395  ILIDEYQDSNEVQEVIMNAI--------SKKNDIPNTFMVGDVKQSIYRFRQAKPELFLD 446

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRH 297
            +         N       I+L  +FRS  +I+  V+ VF+     N   L  D    ++ 
Sbjct: 447  KYNRYSD---NRVGNERKIKLFKNFRSRPEIIFAVNYVFNQIMSVNIGELEYDEGEMLKS 503

Query: 298  RSSRIGQVGTV-------QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA--SILARR 348
             +        V       +L       ++   +  Q    +  +++ +E+     I AR 
Sbjct: 504  GADFPELGENVMDAESKIELHLLDKKDNEVCEDNSQNPEGAEAENINEETPDNIQIEARL 563

Query: 349  IAYTISNMIGTD----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            +   I ++I  +          K R +  KDI++L+R   +              + I V
Sbjct: 564  VGKRIIDLINNEKFKVYDKDEKKYRNVTYKDIVILLRTTSNWA---PTFVEELKSFGIPV 620

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--- 461
              +      D++ I+ +++L + I +   D+  + +L+SP+  FS ++I  I        
Sbjct: 621  FADTNTGYFDNIEIRTIISLLQIIDNPIQDIPLLSILRSPIEGFSSEEIIDIRMVDRNIN 680

Query: 462  ---------ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                     E++   E I+  +     K  + +  + +    + +    +F   I     
Sbjct: 681  FFSALKIIIESDDADERIKHVSKELKDKVSNFLNKLKKWRKKSLYMPIDEFIWYIYTDTG 740

Query: 513  GRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHS 566
                      G +    L        + E  SY  L   I+ +             +   
Sbjct: 741  YYGFVGAMPGGKQRQANLRILFQRAKQYESTSYKGLFNFINFINKLRNSSGDMGSAKILG 800

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
             N + VRIM+VH +KGLE PVV L  TG         + +     L   P       +  
Sbjct: 801  ENEDVVRIMSVHKSKGLEFPVVILSGTGKNFNLMDMNRSVLFHSELGLGPEYVNIDRRIS 860

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------- 678
                    L K +K  T  E  R+LYV +TRA ++LII   +    +             
Sbjct: 861  YPTIAKQVLKKKIKVETLSEEMRILYVALTRAKEKLIITGTAKDLEKTSEKWCEAIKYEE 920

Query: 679  -------------------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
                                     +      D            +K +W    W   + 
Sbjct: 921  GKIPEYVVINAKNYLDWIVPAVAKHLSGKVIRDIGGVYDFEPLVDDKSKWCVKLWRKENF 980

Query: 720  ENTPLEREETIKQLM---------------DEQKIPKKLFSPIKNDINEPYILNPSTI-- 762
            +N   +  E    +                +E           K   N P   + S I  
Sbjct: 981  KNDLRDENEKEDIIKIVKDESLNGGNSIYYEEVNRRLNWQYKYKESCNIPSKFSVSEIKR 1040

Query: 763  -----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT---LPEHKRK 802
                                 K       +      +G ++H ++Q +         +  
Sbjct: 1041 RFDFLSADEGSSFLVDSSKLNKPVFLQKTTKLSASEKGTLLHTVMQHVDLKKVSNYEEIS 1100

Query: 803  NFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKIN---- 856
            N +     +       +E  ++    I +   + +    + S     EV     ++    
Sbjct: 1101 NQVNDLVNRE--FITREEANSIDANKILKFFNSSLGKRMIKSKKVLREVPFIVSLDSTEL 1158

Query: 857  --------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                      ++ +++ G ID        + + +YKT +    +++ I   +  Q+  Y+
Sbjct: 1159 YKDLPRDVYGEEKVLLQGIIDCYFEEDDELVLLDYKTDYV--DDLDKIKERYSVQIKCYK 1216

Query: 909  KILKDS 914
              L+  
Sbjct: 1217 NALERL 1222


>gi|229090184|ref|ZP_04221432.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-42]
 gi|228693120|gb|EEL46833.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-42]
          Length = 1166

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEGGEMKPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPGEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + +    +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1026 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1145 QHPVKEKCLYFFDGNHVIKVEE 1166


>gi|324325258|gb|ADY20518.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar
            finitimus YBT-020]
          Length = 1241

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 165/1043 (15%), Positives = 336/1043 (32%), Gaps = 147/1043 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVRFQLETAEQHIRKATELAMLADGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREYSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707
              + D +  S +     +                                        K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAK 814
                                     RG  +H ++Q +  L +   +  I        N +
Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHV-DLKKPITEEVIREQIAGMVNKE 1099

Query: 815  LWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
            L   ++ + + +  +    ++ +    ++  S   EV  +  +              + I
Sbjct: 1100 LLTFQQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESI 1159

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S 
Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIAGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL 1219

Query: 916  PNKSLV-CLLIYVSEPKVFIIPQ 937
                +    L +     V  I +
Sbjct: 1220 -QHPVKEKCLYFFDGNHVVKIEE 1241


>gi|229177656|ref|ZP_04305033.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 172560W]
 gi|228605846|gb|EEK63290.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 172560W]
          Length = 1166

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A+  +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAH-ESWTSLYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 490  KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLESERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLVAEEAYQDWQGNSGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKEKCLYFFDGNHVVNIEE 1166


>gi|170707635|ref|ZP_02898087.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389]
 gi|170127410|gb|EDS96285.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389]
          Length = 1241

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 160/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R ++ +D ++L+R                    + V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSM----PWAPQIMEELKLQGVPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLESERKEEVYDRLMWKYGYGEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEILQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|229154809|ref|ZP_04282924.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 4342]
 gi|228628757|gb|EEK85469.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus ATCC 4342]
          Length = 1166

 Score =  406 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLVLLGTLSSAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQTMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 490  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707
              + D +  S +     +                                        K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEILLELGQGSIPDEIYGYSASWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKEKCLYFFDGNHVVKIEE 1166


>gi|229016490|ref|ZP_04173431.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1273]
 gi|229022699|ref|ZP_04179223.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1272]
 gi|228738511|gb|EEL88983.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1272]
 gi|228744757|gb|EEL94818.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH1273]
          Length = 1166

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/1041 (15%), Positives = 329/1041 (31%), Gaps = 143/1041 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-------KKAQTLQQASQTQCIEERFSL 68
            + +D+          I K   L+M    P                  ++  +     +  
Sbjct: 150  LLEDVKFQLETAEEHIRKATELAMLPDGPAPRVETLQADAVLLGTLSSAACESWTSVYEA 209

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121
            + +         +K+   +++ K+   L+ K K    +  +                M  
Sbjct: 210  MQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMHP 269

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176
                 + L K     ++  K+   ++DF DL      +L ++        + +  +   +
Sbjct: 270  VLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRNK 329

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP  
Sbjct: 330  FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294
             L + +   +  +  G K   I+L  +FRS  ++L   + +F     E    +  D+   
Sbjct: 383  FLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 439

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            ++  +S             +    +   + ++           +   A + AR +A  I 
Sbjct: 440  LKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRIK 490

Query: 355  NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             M+ +     + K    R +Q +D ++L+R     P I    +       I V  +    
Sbjct: 491  AMVDSGYEVYDRKTDSMRQVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 546

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465
              +   +  +M + R I +   D+    +L+SP+   +++++  +     +         
Sbjct: 547  YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSS 606

Query: 466  -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
             +     +       K +     +      A+  S  D    + G             G 
Sbjct: 607  FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578
            +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+H
Sbjct: 667  QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE PVVF+   G +  +   +K+  +               + K        + + 
Sbjct: 727  KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679
            +K     E  R+LYV +TRA ++LI+      +N++                   ++   
Sbjct: 787  MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHGEWLLPDHIRAGAS 846

Query: 680  TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708
             + D +  S +     + +                                      K E
Sbjct: 847  CYLDWIAPSLYRHRDSEMLLELGQGNIPVDIYEYDTSWKVEVVDGKDLLAPEPVQEEKQE 906

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767
             +               +EE   +LM E           K  + E      S   +    
Sbjct: 907  LLEALREKKAVPLESERKEEVYDRLMWEYGHEDATSHRAKQSVTEIKRNYQSEEGSDNAF 966

Query: 768  ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---NFITSYCTKNAK 814
                                    RG  +H ++Q +        +     I     K   
Sbjct: 967  IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIARMVNKELL 1026

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
             +   E +  +  +    ++ +    ++  S   EV  +  ++             + I+
Sbjct: 1027 TFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGKKGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEENGITLIDFKTDTIEGKFPGGFDQAKPTLEDRYKVQLSLYAKALEKSLK 1145

Query: 917  NKSLVCLLIYVSEPKVFIIPQ 937
            +      L +     V  I +
Sbjct: 1146 HPVKEKCLYFFDGNHVVNIEE 1166


>gi|229056867|ref|ZP_04196263.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH603]
 gi|228720395|gb|EEL71968.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH603]
          Length = 1166

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/1007 (16%), Positives = 323/1007 (32%), Gaps = 141/1007 (14%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
              L    TL  A++       +  + +         +K+   +++ K+   L+ K K   
Sbjct: 187  ADLALLGTLSSAAR-GSWTSVYEAMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEV 245

Query: 105  DEFIKIRDRFNT-------YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
             +  +                M       + L K     ++  K+   ++DF DL     
Sbjct: 246  KKLQEELFSRRPESFLRDFQDMHPVLEKLVKLVKVFTERFQAIKRDKGMVDFTDLEHFCL 305

Query: 158  DLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
             +L ++        + +  +   +   +L+DE QDT+ +Q  +I+ +T+D          
Sbjct: 306  QILSEQSEDGEMKPSAVALQYRNKFAEVLVDEYQDTNFVQESIIKFVTKDSES------- 358

Query: 213  PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
               LF VGD KQSIY F  AEP   L + +   +   + G K   I+L  +FRS  ++L 
Sbjct: 359  EGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLDGGMK---IDLAKNFRSRHEVLA 415

Query: 273  VVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
              + +F     E    +  D+   ++  +S             +    +   + ++    
Sbjct: 416  GTNFIFKQIMGEEVGEIDYDADAELKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG--- 472

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTP 387
                   +   A + AR +A  I  M+ +     + K    R +Q +D ++L+R     P
Sbjct: 473  ------AEVEKAQLEARLMAQRIKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAP 526

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
             I    +       I V  +      +   +  +M + R I +   D+    +L+SP+  
Sbjct: 527  QIMEELK----LQGIPVYADLATGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVG 582

Query: 448  FSEDDIFKICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
             +++++  +     +          +     +       K +     +      A+  S 
Sbjct: 583  LNDEELATLRAHGKKGSFYEVMSLFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSL 642

Query: 501  HDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--- 556
             D    + G             G +    L    +   + E  S+  L   +  +E+   
Sbjct: 643  SDLIWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILE 702

Query: 557  --YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                    RA     + VRIMT+H +KGLE PVVF+   G +  +   +K+  +      
Sbjct: 703  RGDDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGF 762

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                     + K        + + +K     E  R+LYV +TRA ++LI+      +N++
Sbjct: 763  GSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKE 822

Query: 675  -------------------KSNQRTWYDMVYDSFHNDERVKKI----------------- 698
                               ++    + D +  S +     + +                 
Sbjct: 823  MEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYRHRDSEMLLELGQGNIPGEIYEYSA 882

Query: 699  --------------KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                                 K E +               +EE   +LM E        
Sbjct: 883  SWKVEVVDGKDLLAPEPVQEEKQELLEALRDKKAVPLESERKEEVYDRLMWEYGYADATS 942

Query: 745  SPIKNDINEPYILNPSTIDTKGK-----------TNLESLLSDNQTFNRGLIIHKLLQVI 793
               K  + E      S   +                            RG  +H ++Q +
Sbjct: 943  HRAKQSVTEIKRNYQSEEGSDNAFIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHV 1002

Query: 794  FTLPEHKRK---NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEV 849
                    +     I     K    +   E +  +  +    ++ +    ++  S   EV
Sbjct: 1003 DLKKPITIEVLQEQIARMVNKELLTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREV 1061

Query: 850  SVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHI 896
              +  ++             + I++ G ID +   +  I + ++KT       P   +  
Sbjct: 1062 PFTMMLSAEEAYQDWQGKKGETILVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQA 1121

Query: 897  P----YTHIAQLSIYEKILKD--SYPNKSLVCLLIYVSEPKVFIIPQ 937
                   +  QLS+Y K L+    YP K     L +     V  I +
Sbjct: 1122 KPILEDRYKVQLSLYAKALEKSLKYPVK--EKCLYFFDGNHVVNIDE 1166


>gi|118476726|ref|YP_893877.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus
            thuringiensis str. Al Hakam]
 gi|225863093|ref|YP_002748471.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102]
 gi|251764499|sp|A0RAX7|ADDA_BACAH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|118415951|gb|ABK84370.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus
            thuringiensis str. Al Hakam]
 gi|225787430|gb|ACO27647.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102]
          Length = 1241

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + +    +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|217958719|ref|YP_002337267.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187]
 gi|251764503|sp|B7HZR5|ADDA_BACC7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|217066718|gb|ACJ80968.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187]
          Length = 1241

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/1043 (15%), Positives = 332/1043 (31%), Gaps = 147/1043 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEEGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707
              + D +  S +     +                                        K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLESERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813
                                     RG  +H ++Q +     + E   +  I     K  
Sbjct: 1041 FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQIAGMVNKEL 1100

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
              +   E +  +  +    ++ +    ++  S   EV  +  +              + I
Sbjct: 1101 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESI 1159

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S 
Sbjct: 1160 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL 1219

Query: 916  PNKSLV-CLLIYVSEPKVFIIPQ 937
                +    L +     V  + +
Sbjct: 1220 -QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|47567601|ref|ZP_00238312.1| reticulocyte binding protein [Bacillus cereus G9241]
 gi|47555796|gb|EAL14136.1| reticulocyte binding protein [Bacillus cereus G9241]
          Length = 1241

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/1042 (15%), Positives = 330/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLVLLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTERFQTMKRDKGMVDFTDLEHFCLQILSEQSESGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707
              + D +  S +     +                                        K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEILLELGQGSIPDEIYGYSASWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT            Q    +   +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFSGGFEQAKPILEERYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1220 QHPVKEKCLYFFDGNHVVKIEE 1241


>gi|229108699|ref|ZP_04238309.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-15]
 gi|228674729|gb|EEL29963.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-15]
          Length = 1166

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/1043 (15%), Positives = 336/1043 (32%), Gaps = 147/1043 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          +    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              ++ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAIVDSGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   S++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +           K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKD--S 914
            + G ID +   +  I + ++KT       P   +         +  QLS+Y K L+    
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSLQ 1145

Query: 915  YPNKSLVCLLIYVSEPKVFIIPQ 937
            +P K +   L +     V  I +
Sbjct: 1146 HPVKEI--CLYFFDGNHVVNIEE 1166


>gi|228990221|ref|ZP_04150190.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus pseudomycoides DSM
            12442]
 gi|228769504|gb|EEM18098.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus pseudomycoides DSM
            12442]
          Length = 1182

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 161/1041 (15%), Positives = 326/1041 (31%), Gaps = 144/1041 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K + L+M    P          L    TL  A+  Q     + 
Sbjct: 166  LLEDVKFQLETAEKHIRKAIELAMLPDGPAPRIETLQADLVLLGTLSSAAH-QSWTSVYE 224

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-------KMF 120
             + +         +K+   +EI K+   L+ K K    +  +                M 
Sbjct: 225  AMQNVSWQTLKRIKKSDYNEEIVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFKDMH 284

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQ 175
                  + + K     ++  K+   ++DF DL      +L +R       S+ +  +   
Sbjct: 285  PVLEKLVQIVKVFTERFQTIKRDKGMVDFTDLEHFCLQILSERANDGGLRSSPVALQYRN 344

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+DF            LF VGD KQSIY F  AEP 
Sbjct: 345  KFAEVLVDEYQDTNFVQESIIKFVTKDF-------EQKGNLFMVGDVKQSIYRFRLAEPG 397

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTT 293
              L + +               I+L  +FRS  ++L   + +F          +  D+  
Sbjct: 398  LFLGKYKRFT---PEGIDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGETVGEIDYDADA 454

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +      +    ++          +   A + AR +A  I
Sbjct: 455  ELKLGASYPEGEDVAAELLCIHQSEGEESVEGEDGV--------EVEKAQLEARLMAQRI 506

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R ++ +D ++L+R     P I    +       I V      
Sbjct: 507  KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYAELAT 562

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 563  GYFEATEVTVMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELAMLRAHEKKGSFYEVMR 622

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K Q     +      A+  S  D    +               G
Sbjct: 623  SFLQGAPLEEEAELHGKLQWFYNLLQGWREFARQQSLSDLIWKVYRETGYYDFVGGLPAG 682

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 683  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 742

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 743  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 802

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+        ++                   ++  
Sbjct: 803  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEIEKWLDSREHTDWLLPDYVRAGA 862

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 863  SCYLDWIAPSLYRHHDSEMLLELGQGNIPNEIYEYNASWKVEVVDGGTLLAPEPVQEEKQ 922

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +L  E           K  + E      S   +   
Sbjct: 923  ELLEALREKKPVPLESERKEEVYARLTWEYAYEGATAHRAKQSVTEIKRNYQSEDGSDNA 982

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 983  FIKKLRTPIKTRPRFMEKKGLTYAERGTAVHAVMQHVNLQQPITLETVQEQIAEMVNKEL 1042

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPK----------KDII 863
               ++ + + +  I    +  +    ++  S   EV  +  ++  +          + ++
Sbjct: 1043 LTFEQAEEIAIDRIVAFFDTDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQNQSRESVL 1102

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYP 916
            + G ID +   +  + + ++KT            Q    +   +  QLS+Y K L+ S  
Sbjct: 1103 VQGVIDCMIEEEDGVVLIDFKTDTIEGKFSGGFDQAKPILAERYKVQLSLYAKALEKSL- 1161

Query: 917  NKSLV-CLLIYVSEPKVFIIP 936
            +  +    L +     +  + 
Sbjct: 1162 HHPVKEKCLYFFDGNHIVHVD 1182


>gi|229160194|ref|ZP_04288193.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus R309803]
 gi|228623155|gb|EEK79982.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus R309803]
          Length = 1166

 Score =  405 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/1041 (15%), Positives = 334/1041 (32%), Gaps = 143/1041 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQ--CIEERFSL 68
            + +D+          I K   L+M    P     T+      L   S +        +  
Sbjct: 150  LLEDVKFQLETAELHIRKATELAMLPDGPAPRVETLQADIALLGTLSSSARESWTSVYEA 209

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121
            + +         +K+   ++I K+   L+ K K    +  +                M  
Sbjct: 210  MQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMHP 269

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176
                 + L K     ++  K+   ++DF DL      +L ++        + +  +   +
Sbjct: 270  VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMKPSAVALQYRNK 329

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP  
Sbjct: 330  FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294
             L + +   +  +  G K   I+L  +FRS  ++L   + +F     E    +  D+   
Sbjct: 383  FLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 439

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            ++  ++             +    +   + ++           +   A + AR +A  I 
Sbjct: 440  LKLGATYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRIK 490

Query: 355  NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             M+ +     + K    R +Q +D ++L+R     P I    +       I V  +    
Sbjct: 491  AMVDSGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 546

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465
              +   +  +M + R I +   D+    +L+SP+   +++++  +     +         
Sbjct: 547  YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELAMLRAHGKKGSFYEVMSS 606

Query: 466  -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
             +     +       K +     +      A+  S  D    + G             G 
Sbjct: 607  FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578
            +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+H
Sbjct: 667  QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE PVVF+   G +  +   +K+  +               + K        + + 
Sbjct: 727  KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679
            +K     E  R+LYV +TRA ++LI+      +N++                   ++   
Sbjct: 787  MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 846

Query: 680  TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708
             + D +  S +     + +                                      K E
Sbjct: 847  CYLDWIASSLYRHRDSEMLLELGQGSIPGEIYEYDTNWKVEVVDGNTLLAPEPVQEEKQE 906

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767
             +               +EE   +L+ +    +      K  + E      S   +    
Sbjct: 907  LLEALREKKAVPLQSERKEEVYDRLLWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNAF 966

Query: 768  ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLW 816
                                    RG  +H ++Q +        +          N +L 
Sbjct: 967  IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITAETLQEQIAGMVNKELL 1026

Query: 817  PAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIII 864
              ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I++
Sbjct: 1027 TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEEAILV 1086

Query: 865  SGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPN 917
             G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S   
Sbjct: 1087 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSL-Q 1145

Query: 918  KSLV-CLLIYVSEPKVFIIPQ 937
              +    L +     V  I +
Sbjct: 1146 HPVKEKCLYFFDGNHVVHIEE 1166


>gi|229195442|ref|ZP_04322210.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1293]
 gi|228587982|gb|EEK46032.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus m1293]
          Length = 1166

 Score =  405 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/1043 (15%), Positives = 332/1043 (31%), Gaps = 147/1043 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEEGEMKPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707
              + D +  S +     +                                        K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEILLELGQGSVPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813
                                     RG  +H ++Q +     + E   +  I     K  
Sbjct: 966  FIKKIRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQIAGMVNKEL 1025

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
              +   E +  +  +    ++ +    ++  S   EV  +  +              + I
Sbjct: 1026 LTFEQAE-EIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESI 1084

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S 
Sbjct: 1085 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL 1144

Query: 916  PNKSLV-CLLIYVSEPKVFIIPQ 937
                +    L +     V  + +
Sbjct: 1145 -QHPVKEKCLYFFDGNHVIKVEE 1166


>gi|218902338|ref|YP_002450172.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820]
 gi|251764500|sp|B7JDU4|ADDA_BACC0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|218537459|gb|ACK89857.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820]
          Length = 1240

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/1043 (15%), Positives = 332/1043 (31%), Gaps = 148/1043 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ---------ASQTQCIEERF 66
            + +D+          I K   L+M    P    + +TLQ          A+  +     +
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAP--RIETLQADLALFGTLSAAARESWTSVY 282

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKM 119
              + +         +K+   ++I K+   L+ K K    +  +                M
Sbjct: 283  EAMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDM 342

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174
                   + L K     ++  K+   ++DF DL      +L ++        + +  +  
Sbjct: 343  HPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYR 402

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP
Sbjct: 403  NKFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEP 455

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292
               L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+ 
Sbjct: 456  GLFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDAD 512

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              ++  +S             +    +     +            +   A + AR +A  
Sbjct: 513  AELKLGASYPEGEDVAAELLCIQQTEEVIDGEEG----------AEVEKAQLEARLMAQR 562

Query: 353  ISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I  M+ +     + K    R +Q +D ++L+R     P I    +       I V  +  
Sbjct: 563  IKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLA 618

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---- 465
                +   +  +M + R I +   D+    +L+SP+   +++++  +     +       
Sbjct: 619  TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVM 678

Query: 466  ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521
               +     +       K +     +      A+  S  D    + G             
Sbjct: 679  SSFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPA 738

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576
            G +    L    +   + E  S+  L   +  +E+           RA     + VRIMT
Sbjct: 739  GKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMT 798

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE PVVF+   G +  +   +K+  +               + K        + 
Sbjct: 799  IHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIK 858

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677
            + +K     E  R+LYV +TRA ++LI+      + ++                   ++ 
Sbjct: 859  RKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAG 918

Query: 678  QRTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINK 706
               + D +  S +     + +                                      K
Sbjct: 919  ASCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEK 978

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             E +               +EE   +LM + +  +      K  + E      S   +  
Sbjct: 979  QELLEALREKKAVPLESERKEEVYDRLMWKYRYGEATSHRAKQSVTEIKRNYQSEEGSDN 1038

Query: 767  K-----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAK 814
                                      RG  +H ++Q +        +          N +
Sbjct: 1039 AFIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKE 1098

Query: 815  LWPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
            L   ++ + +    +    ++ +    ++  S   EV  +  +              + I
Sbjct: 1099 LLTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESI 1158

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S 
Sbjct: 1159 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL 1218

Query: 916  PNKSLV-CLLIYVSEPKVFIIPQ 937
                +    L +     V  + +
Sbjct: 1219 -QHPVKEKCLYFFDGNHVIKVEE 1240


>gi|229042983|ref|ZP_04190714.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH676]
 gi|228726323|gb|EEL77549.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus AH676]
          Length = 1165

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/1042 (15%), Positives = 332/1042 (31%), Gaps = 146/1042 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          +    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADVALLGTLSSAAR-ESWTSLYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +     +            +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEVIDGEEG----------AEVEKAQLEARLMAQRI 488

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 489  KAMVDSGYEVYDRKNDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 544

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   S++++  +     +        
Sbjct: 545  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLSDEELATLRAHGKKGSFYEVMS 604

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 605  SFLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 664

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 665  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 724

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 725  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 784

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 785  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 844

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 845  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 904

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +           K  + E      S   +   
Sbjct: 905  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEDATSHRAKQSVTEIKRNYQSEEGSDNA 964

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 965  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1024

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +             ++ I+
Sbjct: 1025 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSEETIL 1084

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1085 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1143

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1144 QHPVKEKCLYFFDGNHVVNIEE 1165


>gi|228926280|ref|ZP_04089354.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pondicheriensis BGSC 4BA1]
 gi|228833377|gb|EEM78940.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar pondicheriensis BGSC 4BA1]
          Length = 1165

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 330/1042 (31%), Gaps = 146/1042 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSAAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +     +            +   A + AR +A  I
Sbjct: 439  ELKLGASYPEGEDVAAELLCIQQTEEVIDGEEG----------AEVEKAQLEARLMAQRI 488

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R ++ +D ++L+R     P I    +       I V  +   
Sbjct: 489  KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 544

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 545  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 604

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 605  TFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 664

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 665  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 724

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 725  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 784

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 785  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 844

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 845  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 904

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 905  ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 964

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 965  FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1024

Query: 816  WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + +    +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1025 LTFEQAEEIAVEKVISFFDSDLGKRILAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1084

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1085 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1143

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1144 QHPVKEKCLYFFDGNHVIKVEE 1165


>gi|228984311|ref|ZP_04144492.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar tochigiensis BGSC 4Y1]
 gi|228775428|gb|EEM23813.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar tochigiensis BGSC 4Y1]
          Length = 1166

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 165/1042 (15%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLVLLGTLSSAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQTMKRDKGMVDFTDLEHFCLQVLSEQSENGEMKPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATAHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    E+ +    ++  S   EV  +  +              + I+
Sbjct: 1026 LTFEQAEEIAIEKVISFFESDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1145 QHPVKEKCLYFFDGNHVVKIEE 1166


>gi|229183444|ref|ZP_04310669.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BGSC 6E1]
 gi|228600028|gb|EEK57623.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BGSC 6E1]
          Length = 1166

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/1042 (15%), Positives = 332/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSSAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 439  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 606  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 786  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 845

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 846  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 905

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               ++E   +LM +    +      K  + E      S   +   
Sbjct: 906  ELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 965

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 966  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1025

Query: 816  WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + +    +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1026 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1086 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILETRYKVQLSLYAKALEKSL- 1144

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1145 QHPVKEKCLYFFDGNHVIKVEE 1166


>gi|229171886|ref|ZP_04299455.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus MM3]
 gi|228611596|gb|EEK68849.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus MM3]
          Length = 1166

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 159/1041 (15%), Positives = 332/1041 (31%), Gaps = 143/1041 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-------KKAQTLQQASQTQCIEERFSL 68
            + +D+        + I K   L+M    P                  ++  +     +  
Sbjct: 150  LLEDVKFQLETAETHIRKATELAMLPDGPAPRVETLQADAVLLGTLSSAARESWTSVYEA 209

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121
            + +         +K+   +++ K+   L+ K K    +  +                M  
Sbjct: 210  MQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMHP 269

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176
                 + L K     ++  K+   ++DF DL      +L ++        + +  +   +
Sbjct: 270  VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENDEMKPSAVALQYRNK 329

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP  
Sbjct: 330  FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 382

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294
             L + +   +   + G K   I+L  +FRS  ++L   + +F     E    +  D+   
Sbjct: 383  FLGKYKRFTQEGLDGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 439

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            ++  +S             +    +   + ++           +   A + AR +A  I 
Sbjct: 440  LKLGASYPEGEDVAAELLCIQQTEEEVQDGEEG---------AEVEKAQLEARLMAQRIK 490

Query: 355  NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             M+ +     + K    R +Q +D ++L+R     P I    +       I V  +    
Sbjct: 491  AMVDSGYTVYDRKTNEMRQVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 546

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465
              +   +  +M + R I +   D+    +L+SP+   +++++  +     +         
Sbjct: 547  YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMST 606

Query: 466  -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
             +     +       K +     +      A+  S  D    + G             G 
Sbjct: 607  FLKGAPLEEEQELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 666

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578
            +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+H
Sbjct: 667  QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 726

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE PVVF+   G +  +   +K+  +               + K        + + 
Sbjct: 727  KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 786

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679
            +K     E  R+LYV +TRA ++LI+      +N++                   ++   
Sbjct: 787  MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 846

Query: 680  TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708
             + D +  S +     + +                                      K E
Sbjct: 847  CYLDWIAPSLYRHRDSEMLLELGQGSIPGEIYEYDTNWKVEVVDGKTLLAPEPVQEEKQE 906

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767
             +               +EE   +LM +    +      K  + E      S   +    
Sbjct: 907  LLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAF 966

Query: 768  ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLW 816
                                    RG  +H ++Q +        +          N +L 
Sbjct: 967  IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITIEVLQEQIAGMVNKELL 1026

Query: 817  PAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIII 864
              ++ + + +  +    ++ +    ++  S   EV  +  +              + I++
Sbjct: 1027 TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSDETILV 1086

Query: 865  SGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPN 917
             G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S   
Sbjct: 1087 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSL-Q 1145

Query: 918  KSLV-CLLIYVSEPKVFIIPQ 937
              +    L +     V  + +
Sbjct: 1146 HPVKEKCLYFFDGNHVVKVEE 1166


>gi|228944850|ref|ZP_04107213.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar monterrey BGSC 4AJ1]
 gi|228814878|gb|EEM61136.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis
            serovar monterrey BGSC 4AJ1]
          Length = 1165

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/1042 (15%), Positives = 332/1042 (31%), Gaps = 146/1042 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRIETLQADLALLGTLSAAAR-ESWTSVYE 208

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +      +         M 
Sbjct: 209  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRSESFLRDFQDMH 268

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269  PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +     +            +   A + AR +A  I
Sbjct: 439  ELKLGASYPEGEDVAAELLCIQQTEEVIDGEEG----------AEVEKAQLEARLMAQRI 488

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 489  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 544

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 545  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 604

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 605  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 664

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 665  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 724

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 725  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 784

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      + ++                   ++  
Sbjct: 785  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAGA 844

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 845  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYRYDTSWKVEVVDGNTLLAPEPVQEEKQ 904

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM + +  +      K  + E      S   +   
Sbjct: 905  ELLEALREKKAVPLESERKEEVYDRLMWKYRYGEATSHRAKQSVTEIKRNYQSEEGSDNA 964

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 965  FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKEL 1024

Query: 816  WPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + +    +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1025 LTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESIL 1084

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1085 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL- 1143

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1144 QHPVKEKCLYFFDGNHVIKVEE 1165


>gi|52144188|ref|YP_082640.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L]
 gi|81689028|sp|Q63EM2|ADDA_BACCZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|51977657|gb|AAU19207.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L]
          Length = 1241

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/1042 (15%), Positives = 334/1042 (32%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 225  LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 283

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
             + +         +K+   ++I K+   L+ K K    +  +                M 
Sbjct: 284  AMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMH 343

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                  + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 344  PVLEKLVQLVKVFTGRFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRN 403

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404  KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457  LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 514  ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 565  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 620

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 621  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 680

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 681  SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 741  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 800

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 801  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 860

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 861  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 920

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 921  SCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 980

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 981  ELLEALREKKAVPLESERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 1040

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 1041 FIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPVTVEVLQEQIAGMVNKEL 1100

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  +              + I+
Sbjct: 1101 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGESGESIL 1160

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPY----THIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S  
Sbjct: 1161 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEVRYKVQLSLYAKALEKSL- 1219

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  + +
Sbjct: 1220 QHPVKEKCLYFFDGNHVIKVEE 1241


>gi|229120765|ref|ZP_04250008.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 95/8201]
 gi|228662770|gb|EEL18367.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus 95/8201]
          Length = 1165

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 164/1043 (15%), Positives = 332/1043 (31%), Gaps = 148/1043 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ---------ASQTQCIEERF 66
            + +D+          I K   L+M    P    + +TLQ          A+  +     +
Sbjct: 150  LLEDVKFQLETAEQHIRKATELAMLPDGPAP--RIETLQADLALFGTLSAAARESWTSVY 207

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKM 119
              + +         +K+   ++I K+   L+ K K    +  +                M
Sbjct: 208  EAMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDM 267

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174
                   + L K     ++  K+   ++DF DL      +L ++        + +  +  
Sbjct: 268  HPVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYR 327

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP
Sbjct: 328  NKFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEP 380

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292
               L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+ 
Sbjct: 381  GLFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDAD 437

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              ++  +S             +    +     +            +   A + AR +A  
Sbjct: 438  AELKLGASYPEGEDVAAELLCIQQTEEVIDGEEG----------AEVEKAQLEARLMAQR 487

Query: 353  ISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I  M+ +     + K    R +Q +D ++L+R     P I    +       I V  +  
Sbjct: 488  IKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLA 543

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---- 465
                +   +  +M + R I +   D+    +L+SP+   +++++  +     +       
Sbjct: 544  TGYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVM 603

Query: 466  ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521
               +     +       K +     +      A+  S  D    + G             
Sbjct: 604  SSFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPA 663

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576
            G +    L    +   + E  S+  L   +  +E+           RA     + VRIMT
Sbjct: 664  GKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMT 723

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE PVVF+   G +  +   +K+  +               + K        + 
Sbjct: 724  IHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIK 783

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677
            + +K     E  R+LYV +TRA ++LI+      + ++                   ++ 
Sbjct: 784  RKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKEMEKWLDAREHSEWLLPDHVRAG 843

Query: 678  QRTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINK 706
               + D +  S +     + +                                      K
Sbjct: 844  ASCYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEK 903

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             E +               +EE   +LM + +  +      K  + E      S   +  
Sbjct: 904  QELLEALREKKAVPLESERKEEVYDRLMWKYRYGEATSHRAKQSVTEIKRNYQSEEGSDN 963

Query: 767  K-----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAK 814
                                      RG  +H ++Q +        +          N +
Sbjct: 964  AFIKKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITVEVLQEQIAGMVNKE 1023

Query: 815  LWPAKEYKNLL-LSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDI 862
            L   ++ + +    +    ++ +    ++  S   EV  +  +              + I
Sbjct: 1024 LLTFEQAEEIAVEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESI 1083

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S 
Sbjct: 1084 LVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEERYKVQLSLYAKALEKSL 1143

Query: 916  PNKSLV-CLLIYVSEPKVFIIPQ 937
                +    L +     V  + +
Sbjct: 1144 -QHPVKEKCLYFFDGNHVIKVEE 1165


>gi|212640054|ref|YP_002316574.1| ATP-dependent exoDNAse (exonuclease V) subunit beta (contains
            helicase and exonuclease domains) [Anoxybacillus
            flavithermus WK1]
 gi|251764497|sp|B7GM51|ADDA_ANOFW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|212561534|gb|ACJ34589.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Anoxybacillus
            flavithermus WK1]
          Length = 1209

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 141/1013 (13%), Positives = 320/1013 (31%), Gaps = 115/1013 (11%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            +++ +          + + +  + E G P        +  +    L++A   +  ++   
Sbjct: 222  LFQAVDLALEAAEYRLAQALQKTKEPGGPDYLYDTLASDEQVIAKLKEARH-ESWQQLHE 280

Query: 68   LLSSF-FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR-------FNTYKM 119
             + +  F T K  P+     +++ +    L++++KK      +            + ++M
Sbjct: 281  AMKNVSFATAKRKPKDGAYDEQLVEDVKKLRDQVKKEISSITEELFSFQPVTYVRHLHEM 340

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174
                   + + +      +  K +  ++DF DL      +L+   +      +       
Sbjct: 341  KPIVTTIVQMVQRFAHLLQAKKDEKGIVDFSDLEHYCLRILRAPSLEHELKPSEAALYYR 400

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +   +L+DE QDT+++Q  ++R ++ D             +F VGD KQSIY F  AEP
Sbjct: 401  AQFAEVLVDEYQDTNMVQESILRLVSNDDEATG-------NMFMVGDVKQSIYGFRLAEP 453

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               L++     K     G     I+L  +FRS  +IL   + +F                
Sbjct: 454  SLFLQKYNRFTKD----GDGGLRIDLAKNFRSRKEILDGTNFIFRQLMTETVGDMRYDDD 509

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
               R             E V      + + ++E            ++  + AR IA  I 
Sbjct: 510  AALRFGAQDYPDKQIPVECVWINEAKEESDEEEQEDV--------TAVQLEARWIAKKIK 561

Query: 355  NMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             ++       +     +R +  +DI++L R       +    R       + V       
Sbjct: 562  QLLAEPFFVYDRRLKGERRLMYRDIVILCRSMSSASAMLEEFR----KQNVPVYAELSSG 617

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI- 470
                  +  +++L + I +   D+    +L+SP+    E+ + +I   + +         
Sbjct: 618  YFSATEVSIMLSLLKVIDNPYQDIPLAAVLRSPIVGLDEEALARIRLAKKDGAFYEALCA 677

Query: 471  ---QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526
               +   +    K +  +  + E    A+     D    +               G +  
Sbjct: 678  FVQEPHDDELHEKMKRWLASLSEWRTAARQKPLADLIWQLYRETNFYDYVGGMPGGKQRQ 737

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVRIMTVHTAK 581
              L    +   + EQ S+  +   +  +E+           R+ +   + VR+MT+H +K
Sbjct: 738  ANLRALYDRAKQYEQTSFRGIFRFLRFIERLKEREDDFGAARSLTEQEDVVRMMTIHKSK 797

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVVFL                 +               ++         + K +K 
Sbjct: 798  GLEFPVVFLAGAAKSFNMQDLRSDYVLDKDFGLGMRFVHPTWRASYPTVAQLAIKKKMKW 857

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------------------RTWY 682
                E  R+LYV +TRA ++L I   +     KK                      +++ 
Sbjct: 858  QLLAEEMRILYVALTRAKEKLYIVCTAKDMEAKKKKWQEVAYTSTWELPAYVIEKAKSYA 917

Query: 683  DMVYDSFHNDE---------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
            D +  +    +                   I   + + +++  A E          L+  
Sbjct: 918  DWIGYALARHQQGICSSATVLHDPSLWDIHIVPAHELEQEDAQANEHRDIVEAIQQLQPV 977

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI----------------DTKGKTNLE 771
                +  +E                     + S +                    +    
Sbjct: 978  AIKSEYEEEVNRRLFWTYTHAPATVLRAKQSVSELKRQRDIYGGHAEQPFRKELVERPRF 1037

Query: 772  SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSI 828
                      RG ++H ++Q +  + +    + +     +  N +    ++   + + SI
Sbjct: 1038 LQAKMMTPAERGTMMHLVMQHV-DVTKEVTVDAVREQIARMVNGEWLTEEQATVIDVESI 1096

Query: 829  TRLLENPMMTTAMSCDSY-SEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
                  P+            EV          + +++ G ID +   +  + + +YKT  
Sbjct: 1097 VAFFNTPIGKRMQRATRLEREVPFYLAHEMEGETVVVQGVIDCVFEDEHGLVLIDYKTDR 1156

Query: 888  H--VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
               +    + +   +  QL++Y + ++  +  +     +       +  +  +
Sbjct: 1157 VSWMNDPKQQLKRRYKGQLALYREAIEAIWKREVTETYVYAFDGALLVPMEVD 1209


>gi|166032800|ref|ZP_02235629.1| hypothetical protein DORFOR_02515 [Dorea formicigenerans ATCC
           27755]
 gi|166027157|gb|EDR45914.1| hypothetical protein DORFOR_02515 [Dorea formicigenerans ATCC
           27755]
          Length = 964

 Score =  403 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 154/973 (15%), Positives = 314/973 (32%), Gaps = 106/973 (10%)

Query: 31  INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL----TQKFTPQKNIIT 86
           +        E       +  + L  A     +  R   +          +  + +K    
Sbjct: 10  LEIDGPAVYEEALKLDAQTIRELLSAKNYNELSGRIQNVEWSRFASCRDKTVSKEKIEAV 69

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           +++ ++  ++   LKK            +           + L K  +  ++  K++  V
Sbjct: 70  KDLREQVKEIVSGLKKDYFYQKPEEMAADMQICLPYMEELVGLVKCFSQRFDAKKRQENV 129

Query: 147 LDFEDLIINTNDLLKKRDV----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +DF D+      +L K+       + +  +   +   I+IDE QD++LIQ  ++ S++  
Sbjct: 130 IDFSDMEQFALQILAKKTEEGFEPSEVAKEYQDQFREIMIDEYQDSNLIQETILTSIS-- 187

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +F VGD KQSIYSF  + P+  + +                 I+L  
Sbjct: 188 -----GVSKGKYNIFMVGDVKQSIYSFRLSRPELFMEKFDTY----DLEKGPKQRIDLHK 238

Query: 263 SFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
           +FRS  ++L  V+ +F          +  D    +   +      G              
Sbjct: 239 NFRSRKEVLDSVNYIFRQIMVRNLGEIDYDDKAALYVGAEYPENPGC------------E 286

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILV 378
                  +    +D   + S   + AR IA  I  +I    +     GK R  +  DI++
Sbjct: 287 TEVLVLNTELKKYDRSIKASKQEMEARMIASRIRRLIAEQKVLDKKTGKLRPARYSDIVI 346

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R  K    I  +     N   I      +        I  L+   R + +++ D+   
Sbjct: 347 LTRSVKG---IADIFVQELNREGIPAFSGTKEGYFATQEIGVLLDYLRVLDNRKQDIPLA 403

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-----SKFQHVIKYIHELIH 493
            +L S     +E ++  I +        Y+ ++ +   G       K +H    +++   
Sbjct: 404 AVLMSAFCGLNEQEMAVIRSSEAFEIPFYQAVENYLENGENTVICEKLKHCYGKMNDFRE 463

Query: 494 IAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
           I  +   H+    IL      Q       G +    ++  +      + +SY  L   + 
Sbjct: 464 IVPYTPIHELLRSILTQTGYGQFISAMPGGAQRAANVEMLITKAQAFQSSSYKGLFHFVR 523

Query: 553 ELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +EQ                  + VR+MT+H +KGLE P+VF+  TG +        ++ 
Sbjct: 524 YIEQLQKFEVDYGEASLEDEQSDTVRVMTIHKSKGLEFPIVFVAGTGKKFNVTDLAGQVI 583

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           I   L     +     ++K  + +   + K  K     E  R+LYV +TRA ++LII   
Sbjct: 584 IHARLGVGMDVVDLDRRTKIPSLVKKVIQKEAKLDNLGEELRVLYVALTRAKEKLIITGT 643

Query: 668 SNTSNEK---------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA------- 711
            +    K         +S+   + D +  +         +     + ++           
Sbjct: 644 CDNLETKMAKTLTFAQRSSAIQYLDWIIPALAYIPEEIPVTFEEVLLEEIVRDEVETEVS 703

Query: 712 -------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                          E     R+   +Q   +   PK     +K  ++E   +       
Sbjct: 704 GKIQEEILRRWDTSAEYDANVRQTLEEQFAYQYPYPKSHARKMKFTVSELKKMAYQAELD 763

Query: 765 KGK-----------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
             +                     +         RG   H++++++     + R+   T 
Sbjct: 764 DEENALGEVVFEEPEVVPLLPKFMTEEETLTGAPRGTAYHRVMELLDFEKMYDRQTLETE 823

Query: 808 Y--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINC---- 857
                +  ++            +   L++ +     +       + E      I      
Sbjct: 824 INTFVEQGRMTREMADSVRTADVLGFLDSSVGKRMRTSADCGKLWKEQPFVLGIPGQELY 883

Query: 858 ----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                    ++ G ID     +  + + +YKT      +IE +   + AQL  Y + L+ 
Sbjct: 884 KDEPEGDFALVQGIIDVYFEEEDGLVVLDYKTDKV--YKIEELVEKYHAQLDYYGRALEQ 941

Query: 914 SYPNKSLVCLLIY 926
               K +   ++Y
Sbjct: 942 I-TGKKVKEKVLY 953


>gi|229003980|ref|ZP_04161785.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4]
 gi|228757256|gb|EEM06496.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4]
          Length = 1182

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 159/1041 (15%), Positives = 326/1041 (31%), Gaps = 144/1041 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            + +D+          I K + L+M    P          L    TL  A+  Q     + 
Sbjct: 166  LLEDVKFQLETAEKHIRKAIELAMLPDGPAPRIETLQADLVLLGTLSSAAH-QSWTSVYE 224

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-------KMF 120
             + +         +K+   +EI K+   L+ K K    +  +                M 
Sbjct: 225  AMQNVSWQMLKRIKKSDYNEEIIKQVDSLRNKAKDEVKKLQEELFGRKPESFLRDFKDMH 284

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQ 175
                  + + K     ++  K+   ++DF DL      +L +         + +  +   
Sbjct: 285  PVLEKLVQIVKVFTERFQTIKRDKGMVDFTDLEHFCLQILSERTNDGELRPSPVALQYRN 344

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 345  KFAEVLVDEYQDTNFVQESIIKFVTKDS-------EQEGNLFMVGDVKQSIYRFRLAEPG 397

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTT 293
              L + +               I+L  +FRS  ++L   + +F          +  D+  
Sbjct: 398  LFLGKYKRFT---PEGIDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGETVGEIDYDADA 454

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             +    + +    ++          +   A + AR +A  I
Sbjct: 455  ELKLGASYPEGEDVAAELLCIHQSEEEESVEGEDGV--------EVEKAQLEARLMAQRI 506

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R ++ +D ++L+R     P I    +       I V      
Sbjct: 507  KAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYAELAT 562

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 563  GYFEATEVTVMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELAMLRAHEKKGSFYEVMR 622

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K Q     +      A+  S  D    +               G
Sbjct: 623  SFLQGAPLEEEAELHGKLQWFYNLLQGWREFARQQSLSDLIWKVYRETGYYDFVGGLPAG 682

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA S   + VRIMT+
Sbjct: 683  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALSEQEDVVRIMTI 742

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 743  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 802

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+        ++                   ++  
Sbjct: 803  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEIEKWLDSREHTDWLLPDYVRAGA 862

Query: 679  RTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKD 707
              + D +  S +     + +                                      K 
Sbjct: 863  SCYLDWIAPSLYRHRDSEMLLELGQGNIPNEIYEYDASWKVEVVDGSTLLAPEPVQEEKQ 922

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +L  E           K  + E      S   +   
Sbjct: 923  ELLEALREKKPVPLESERKEEVYARLTWEYAYEGATAHRAKQSVTEIKRNYQSEDGSDNA 982

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 983  FIKKLRTPIKTRPRFMEKKGLTYAERGTAVHAVMQHVNLQKPITLETVQEQIAEMVNKEL 1042

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPK----------KDII 863
               ++ + + +  I    +  +    ++  S   EV  +  ++  +          + ++
Sbjct: 1043 LTFEQAEEIAINRIVAFFDTDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQNQSRESVL 1102

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEH----IPYTHIAQLSIYEKILKDSYP 916
            + G ID +   +  + + ++KT       P   +     +   +  QLS+Y K L+ S  
Sbjct: 1103 VQGVIDCMIEEEDGVVLIDFKTDTIEGKFPGGFDQAKPILAERYKVQLSLYAKALEKSL- 1161

Query: 917  NKSLV-CLLIYVSEPKVFIIP 936
            +  +    L +     +  + 
Sbjct: 1162 HHPVKEKCLYFFDGNHIVHVD 1182


>gi|118444179|ref|YP_877319.1| ATP-dependent nuclease subunit A [Clostridium novyi NT]
 gi|251764519|sp|A0PY67|ADDA_CLONN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|118134635|gb|ABK61679.1| ATP-dependent nuclease subunit A [Clostridium novyi NT]
          Length = 1236

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/983 (15%), Positives = 322/983 (32%), Gaps = 124/983 (12%)

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-KSQDEFIKIRDRFNTYK 118
               +  ++ LS     +  T + N   ++  +K  D++ K+K + QDE  K    ++T +
Sbjct: 270  TSWDSLYNGLSEVKFGRLKTCR-NCEDKKTQEKVKDIRNKVKKQLQDEIKKKITSYSTKE 328

Query: 119  MFKSTLASL-------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            +                L       Y +AKK+  ++DF D      ++L   +    +  
Sbjct: 329  IVTDLRNLYPIMKSLCDLVIEFMDRYSKAKKERGIIDFNDFEHFCLEILGHEE----VAL 384

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            K+ Q+   IL+DE QD++ +Q  +I S+            +P  +F VGD KQSIY F  
Sbjct: 385  KLRQKYIEILVDEYQDSNYVQEAIINSIARR----HEETGNPINVFMVGDVKQSIYRFRQ 440

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSE 289
            A+P+      +           K   + L  +FRS  ++L  V+ +F     EN   L  
Sbjct: 441  AKPEL---FLKKYNSYLEGENAKERKVNLFKNFRSRKEVLDGVNFIFKQIMSENIGELEY 497

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                 +   +          +   +      +   + +   S  + +       + AR +
Sbjct: 498  GDDEALYLGADFEQYEDKSLVGGPIELNLIEKSKDETKEEESEEEEILSNI--QVEARFV 555

Query: 350  AYTISNMIG-------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            A  I+ ++                  R ++ +DI+VL+R   +   +         +  I
Sbjct: 556  AKKINELVNPKIGEPFKVYDNELKAYRNVEYRDIVVLLRSTSNWAPV---FTDEMKENLI 612

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                +      + + IK +++L   I +   D+  + +L+SP+ +F+ +++  I  +  +
Sbjct: 613  PAYADVGNGYFETVEIKTILSLLEIIDNPRQDIPLIAVLRSPIASFTPEELIDIRLENKD 672

Query: 463  TETV--------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
             +           E           K    ++ ++     +      +F   +       
Sbjct: 673  GDFYGGLLKVASSEDRDDNWILFKRKCNSFLEKLNYWREKSIHMPIDEFIWYLYMETGYY 732

Query: 515  QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSAN 568
                +   G +    L        + E+ SY  L   I+ +             +    N
Sbjct: 733  GYVGALAGGMQRQANLKILFQRARQYEKTSYKGLFNFINFINRLKVSSGDMGSAKILGEN 792

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             N VRIM++H +KGLE PV+ L   G         K++     L   P       +    
Sbjct: 793  DNVVRIMSIHKSKGLEFPVIILSALGKNFNMQDLNKRILYHDELGFGPDYIDLDKRIIYE 852

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT-------- 680
                S L K +K  +  E  R+LYV +TRA ++LI+    N   +               
Sbjct: 853  TVPKSALKKKIKLESLSEEMRILYVALTRAKEKLILTGAVNDIEKSAKKWSYALEGEDYK 912

Query: 681  -----------WYDMVYDSFHNDERVKKIKL----------------------------- 700
                       + D +       +  + ++                              
Sbjct: 913  LSQYQVMTGKNYLDWICPVIMRHKDGEVLRELAGIEIFEKVNLLSDESSWKITTDNISGI 972

Query: 701  --TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
               +    +  +         E +    +E  ++L  + K  +    P    + E   + 
Sbjct: 973  LQNDDETNEIILEDIKEIEDIEESSSYYDEINERLNFKYKYIESSKLPTLLTVTELKRMK 1032

Query: 759  PSTIDTK-----------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
             S++               K          +   +G  +H ++Q I    E   ++    
Sbjct: 1033 NSSMYEDYSRDMYTPKLVKKPMFMEKDKKLKGAEKGTAMHAVMQKINYSEELTIEDINRQ 1092

Query: 808  YCTKNAKLWPAKEYKN--LLLSITRLLENPMMTTAM-SCDSYSEVSVSGKIN-------- 856
              T   K +  KE  +      I    ++ +    + + +   E     ++         
Sbjct: 1093 METMVEKEFITKEQADSVEAEKILNFFKSNIGKRLLKAENVRRETPFHMELKSTEIYESL 1152

Query: 857  ----CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                   ++I+I G ID     +  I + +YK+ +    + E I   +  Q+  Y + ++
Sbjct: 1153 PKEIYENENIMIQGIIDCYFEEEDGIVLLDYKSDYFKEGQEEAIIKKYKVQIDYYARAIE 1212

Query: 913  DSYPNKSLVCLLIYVSEPKVFII 935
            +          L      K   I
Sbjct: 1213 ELTGKVVKEKYLYLFYGDKEVEI 1235


>gi|194014992|ref|ZP_03053609.1| recombination helicase AddA [Bacillus pumilus ATCC 7061]
 gi|194014018|gb|EDW23583.1| recombination helicase AddA [Bacillus pumilus ATCC 7061]
          Length = 1232

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/1025 (16%), Positives = 340/1025 (33%), Gaps = 136/1025 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFF 73
            I +DL  +       + + +SLS E G P          L+Q ++    ++ F  L    
Sbjct: 222  IKEDLSLVLRSCQELLERALSLSKEPGGPAPRAENFIDDLEQVNELIRHQDDFEKLYELL 281

Query: 74   ----LTQKFTPQKNIITQEINKKSPDLK-------EKLKKSQDEFIKIRDRFNTYKMFKS 122
                  +  T + +     + +KS D +       EKLK         +   +  +M   
Sbjct: 282  PNVNFKRLKTCKGDEYDPALLEKSTDARNQAKKQLEKLKDEYFMRSPAQHLKSLAEMKPV 341

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS-----AWIRYKIDQEI 177
                + L       +E AK++  ++DF DL      +L ++D               Q+ 
Sbjct: 342  VETLVELVIQFGERFERAKQEKSIVDFSDLEHYCLRILAEQDAEGHLIETEAAKYYQQQF 401

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              +L+DE QDT+L+Q  +++ ++      K  HS+   LF VGD KQSIY F  AEP   
Sbjct: 402  EEVLVDEYQDTNLVQETILKLVS------KGKHSAEGNLFMVGDVKQSIYRFRLAEPMLF 455

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTI 295
            L + +  Q    +  +    I+L  +FRS +D+L   + +F          +  D    +
Sbjct: 456  LNKYKHFQ---PDGKETGKRIDLNKNFRSRSDVLDSTNFLFKQLMGETVGEIEYDEQAEL 512

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            +  +S      T      V          ++                   AR IA  I  
Sbjct: 513  KLGASYPESKDTTTEMLLVHLDQQEAETGEEREELETV---------QFEARIIAKKIKE 563

Query: 356  MIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            ++       + K+   R +Q +DI++L+R     P +    +       I V  N     
Sbjct: 564  LVEQPFQVYDAKQQMTRNLQYRDIVILLRSMPWAPQMMEELK----KQGIPVYANLSSGY 619

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467
             +   +  +++L + I +   D+    +L+SP+ +  E+++  I T   +         +
Sbjct: 620  FEATEVSVILSLLKVIDNPYQDIPLAAVLRSPIVHLDENELALIRTSDKKGTYYDAVKAF 679

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526
              +    +    K +   + + +    +   S  +    +    +          G +  
Sbjct: 680  MSVTHSDHPTCKKLERFFQLLRKWRDFSINHSVAELIWEVYRDTQYLDYVGGMPGGKQRQ 739

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581
              L    +   + E+ ++  L   +  +E+           +  S   + VR+MT+H++K
Sbjct: 740  ANLRALYDRAKQYEKAAFRGLFRFLRFIERMQERGDDLGAAKTFSETEDVVRMMTIHSSK 799

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVVF    G         +   +   L           +       +  + K ++ 
Sbjct: 800  GLEFPVVFTAGLGRNFNMMDLNQSYLLDKELGFGSKYIHPELRISYATLPLVAMKKKMRT 859

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  R+LYV +TRA ++L +        +  S  +           + ER +     
Sbjct: 860  ELLSEELRVLYVALTRAKEKLFLVGSVKNQVKALSKWQNAATGEEWLLPDFERYQSKTYL 919

Query: 702  NSINKDEWIAYEWSTHHPENTPL------------------------------------- 724
            + I          S+   E   +                                     
Sbjct: 920  DFIGPALIRHQAMSSVLEETGDIVLSHPSTFTISFTQASDLLKEDMSLEKKEQDEIVQAL 979

Query: 725  -----------EREETIKQLMDEQKIPKKLFSPIKNDINEPYILN--------PSTIDTK 765
                         E+  ++L  +           K  ++E   +         PS+I   
Sbjct: 980  IDGLPVEGYGDADEKVAERLSWKYPYLAASQVGTKQSVSEIKRMKEIQDEYSVPSSIRKA 1039

Query: 766  G----KTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCT--KNAKLWPA 818
                                +G  +H ++Q I     E   ++ I       +   L   
Sbjct: 1040 RATLYDRPAFMKKKTLTAAEQGTAMHTVMQHIPLPSEEPYDESRIGHLLESLQQRDLLTD 1099

Query: 819  KEYKNLLLS-ITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDIIISGR 867
            ++ +++    I       +    +  D    EVS S  +             + ++I G 
Sbjct: 1100 EQIQSINQEGIAAFFSTSIGQKLLKADWVKREVSFSLVLPVKEVYSHIDTEGEPVLIQGM 1159

Query: 868  IDQISISQQNIFIFEYKTHHH-----VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ID +  +   +++ +YKT        V      +   +  Q+++Y K ++    N++L  
Sbjct: 1160 IDCLFETDGKLYLLDYKTDRVQGRYTVDAAEPILKKRYETQIALYAKAVERL-TNRTLEE 1218

Query: 923  LLIYV 927
             ++Y 
Sbjct: 1219 KILYF 1223


>gi|229101824|ref|ZP_04232539.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-28]
 gi|228681617|gb|EEL35779.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-28]
          Length = 1195

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 160/1041 (15%), Positives = 332/1041 (31%), Gaps = 143/1041 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-------KKAQTLQQASQTQCIEERFSL 68
            + +D+          I K   L+M    P               +  ++  +     +  
Sbjct: 179  LLEDVRFQLETAEQHIRKATELAMLPDGPAPRVETLQADAALLGMLLSAARESWTSVYEA 238

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121
            + +         +K+   ++I K+   L+ K K    +  +                M  
Sbjct: 239  MQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEVKKLQEELFSRRPESFLRDFQDMHP 298

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176
                 + L K     ++  K+   ++DF DL      +L ++        + +  +   +
Sbjct: 299  VLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEDGEMKPSAVALQYRNK 358

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP  
Sbjct: 359  FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 411

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294
             L + +   +  +  G K   I+L  +FRS  ++L   + +F     E    +  D+   
Sbjct: 412  FLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 468

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            ++  +S             +    +     ++ +             A + AR +A  I 
Sbjct: 469  LKLGASYPEGEDVAAELLCIQQTEEEVLEGEEGTEVEK---------AQLEARLMAQRIK 519

Query: 355  NMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             M+ +     + K    R +Q +D ++L+R     P I    +       I V  +    
Sbjct: 520  AMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLATG 575

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465
              +   +  +M + R I +   D+    +L+SP+   +++++  +     +         
Sbjct: 576  YFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSS 635

Query: 466  -VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
             + +   +       K +     +      A+  S  D    + G             G 
Sbjct: 636  FLKDAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGK 695

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578
            +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+H
Sbjct: 696  QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 755

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE PVVF+   G +  +   +K+  +               + K        + + 
Sbjct: 756  KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSPFIDPRKRIKYTTLSQLAIKRK 815

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679
            +K     E  R+LYV +TRA ++LI+      +N++                   ++   
Sbjct: 816  MKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGAS 875

Query: 680  TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708
             + D +  S +     + +                                      K E
Sbjct: 876  CYLDWIAPSLYRHRDSEMLLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQE 935

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK- 767
             +               +EE   +L+ +    +      K  + E      S   +    
Sbjct: 936  LLEALREKKAVPLESERKEEVYDRLLWKYGYEEATSHRAKQSVTEIKRNYQSEDGSDNAF 995

Query: 768  ----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLW 816
                                    RG  +H ++Q +        +          N +L 
Sbjct: 996  IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITAETLQEQIAGMVNKELL 1055

Query: 817  PAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIII 864
              ++ + + +  +    ++ +    ++  S   EV  +  +              + I++
Sbjct: 1056 TFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKNGESILV 1115

Query: 865  SGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPN 917
             G ID +   +  I + ++KT       P   +         +  QLS+Y K L+ S   
Sbjct: 1116 QGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPILEDRYKVQLSLYAKALEKSL-Q 1174

Query: 918  KSLV-CLLIYVSEPKVFIIPQ 937
              +    L +     V  I +
Sbjct: 1175 HPVKEKCLYFFDGNHVVKIEE 1195


>gi|157691776|ref|YP_001486238.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032]
 gi|251764506|sp|A8FBR1|ADDA_BACP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|157680534|gb|ABV61678.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032]
          Length = 1234

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/1027 (16%), Positives = 344/1027 (33%), Gaps = 138/1027 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFF 73
            I +DL  +       + + +SLS E G P          L+Q ++    ++ F  L    
Sbjct: 222  IKEDLSLVLRSCQELLERALSLSKEPGGPAPRAENFIDDLEQVNELIRHQDDFEKLYELL 281

Query: 74   ----LTQKFTPQKNIITQEINKKSPDLK-------EKLKKSQDEFIKIRDRFNTYKMFKS 122
                  +  T + +     + +K+ D +       EKLK         +   +  +M   
Sbjct: 282  PNVNFKRLKTCKGDEYDPVLLEKATDARNQAKKQLEKLKDEYFMRSPAQHLKSLAEMKPI 341

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS-----AWIRYKIDQEI 177
                + L       +E AK++  ++DF DL      +L ++D               Q+ 
Sbjct: 342  VETLVELVIQFGERFERAKQEKSIVDFSDLEHYCLRILAEQDAEGHLIETEAAKYYQQQF 401

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              +L+DE QDT+L+Q  +++ ++      K  HSS   LF VGD KQSIY F  AEP   
Sbjct: 402  EEVLVDEYQDTNLVQETILKLVS------KGEHSSEGNLFMVGDVKQSIYRFRLAEPMLF 455

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTI 295
            L + +  Q    +  +    I+L  +FRS +D+L   + +F     E    +  D    +
Sbjct: 456  LNKYKHFQ---PDGKETGKRIDLNKNFRSRSDVLDSTNFLFKQLMGETVGEIEYDEQAEL 512

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            +  +S      T      V          ++                   AR IA  I  
Sbjct: 513  KLGASYPESKDTTTEMLLVHLDQQEAETGEEREELETV---------QFEARIIAKKIKE 563

Query: 356  MIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            ++       + K+   R +Q +DI++L+R     P +    +       I V  N     
Sbjct: 564  LVEQPFQVYDAKQQMTRNLQYRDIVILLRSMPWAPQMMEELK----KQGIPVYANLSSGY 619

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467
             +   +  +++L + I +   D+    +L+SPL +  E+++  I T   +         +
Sbjct: 620  FEATEVSVILSLLKVIDNPYQDIPLAAVLRSPLVHLDENELALIRTSDKKGTYYDAVKAF 679

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526
              +    +    K +   + + +    +   S  +    +    +          G +  
Sbjct: 680  MSVTHSDHPTCKKLERFFQLLRKWRDFSINHSVAELIWEVYRDTQYLDYVGGMPGGKQRQ 739

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581
              L    +   + E+ ++  L   +  +E+           +  S   + VR+MT+H++K
Sbjct: 740  ANLRALYDRAKQYEKAAFRGLFRFLRFIERMQERGDDLGAAKTFSETEDVVRMMTIHSSK 799

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVVF V  G         +   +   L           +       +  + K ++K
Sbjct: 800  GLEFPVVFTVGLGRNFNMMDLNQSYLLDKELGFGSKYIHPELRISYATLPLVAMKKKMRK 859

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  R+LYV +TRA ++L +        +  S  +           + ER +     
Sbjct: 860  ELLSEELRVLYVALTRAKEKLFLVGSVKNQVKALSKWQNAATGEEWLLPDFERYQSKTYL 919

Query: 702  NSINKDEWIAYEWSTHHPENTPL------------------------------------- 724
            + I          S+   E   +                                     
Sbjct: 920  DFIGPALIRHQAMSSVLEETGDVVLSHPSTFTISFTQASDLLKEDMSLEKKEQDEIVQAL 979

Query: 725  -----------EREETIKQLMDEQKIPKKLFSPIKNDINEPYILN--------PSTIDTK 765
                         E+  ++L  +           K  ++E   +         PS+I   
Sbjct: 980  MDGLPVEGYGDADEKVAERLSWKYPYLAASQVGTKQSVSEIKRMKEIQDEYSVPSSIRKA 1039

Query: 766  G----KTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCT--KNAKLWPA 818
                                +G  +H ++Q I     E   ++ I       +   L   
Sbjct: 1040 RATLYDRPAFMKKKTLTAAEQGTAMHTVMQHIPLPSEEPYDESRIGHLLDSLQQRDLLTD 1099

Query: 819  KEYKNLLLS-ITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDIIISGR 867
            ++ +++    I       +    +  D    EVS S  +             + ++I G 
Sbjct: 1100 EQVQSINQEGIAAFFSTSIGQKLLKADWVKREVSFSMVLPVKEVYSHIDTEGEPVLIQGM 1159

Query: 868  IDQISISQQNIFIFEYKTHHH-------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
            ID +  +   +++ +YKT          +   +  +   +  Q+++Y K ++    N++L
Sbjct: 1160 IDCLFETDGKLYLLDYKTDRVQGRYTGGIDAAVPILKKRYETQIALYAKAVERL-TNRTL 1218

Query: 921  VCLLIYV 927
               ++Y 
Sbjct: 1219 EEKILYF 1225


>gi|229095725|ref|ZP_04226704.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-29]
 gi|228687558|gb|EEL41457.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-29]
          Length = 1195

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 161/1042 (15%), Positives = 331/1042 (31%), Gaps = 145/1042 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-------KKAQTLQQASQTQCIEERFSL 68
            + +D+          I K   L+M    P               +  ++  +     +  
Sbjct: 179  LLEDVRFQLETAEQHIRKATELAMLPDGPAPRVETLQVDAALLGMLSSAARESWTSVYEA 238

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121
            + +         +K+   +++ K+   L+ K K    +  +                M  
Sbjct: 239  MQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMHP 298

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176
                 + L K     ++  K+   ++DF DL      +L ++        + +  +   +
Sbjct: 299  VLEKLVKLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENDEVKPSAVALQYRNK 358

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP  
Sbjct: 359  FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 411

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294
             L + +   +  +  G K   I+L  +FRS  ++L   + +F     E    +  D+   
Sbjct: 412  FLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 468

Query: 295  IRHRSSRI-GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
            ++  +S   G+    +L     ++ +     +                A + AR +A  I
Sbjct: 469  LKLGASYPIGEDVAAELLCIQQTEEEVLEGEEGTEV----------EKAQLEARLMAQRI 518

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 519  KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 574

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
               +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 575  GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 634

Query: 466  --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
              +     +       K +     +      A+  S  D    + G             G
Sbjct: 635  SFLKGAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 694

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 695  KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 754

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 755  HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 814

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             +K     E  R+LYV +TRA ++LI+      +N++                   ++  
Sbjct: 815  KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGA 874

Query: 679  RTWYDMVYDSFHNDERVK-------------------------------KIKLTNSINKD 707
              + D +  S +     +                                        K 
Sbjct: 875  SCYLDWIAPSLYRHRDSEILLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQ 934

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +               +EE   +LM +    +      K  + E      S   +   
Sbjct: 935  ELLEALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA 994

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKL 815
                                     RG  +H ++Q +        +          N +L
Sbjct: 995  FIKKLRAPIKTRPRFMEKKGLTYAERGTAVHTVMQHVDLKKPITVEVLQEQIAGMVNKEL 1054

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDII 863
               ++ + + +  +    ++ +    ++  S   EV  +  ++             + I+
Sbjct: 1055 LTFEQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGNSGESIL 1114

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYP 916
            + G ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S  
Sbjct: 1115 VQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL- 1173

Query: 917  NKSLV-CLLIYVSEPKVFIIPQ 937
               +    L +     V  I +
Sbjct: 1174 QHPVKEKCLYFFDGNHVVNIEE 1195


>gi|46908500|ref|YP_014889.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 4b
            F2365]
 gi|81565413|sp|Q71X99|ADDA_LISMF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|46881772|gb|AAT05066.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes serotype 4b
            str. F2365]
          Length = 1235

 Score =  401 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/1025 (15%), Positives = 341/1025 (33%), Gaps = 132/1025 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   +  + E   P          L + + + + S      +   
Sbjct: 226  IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + S    +  T + K+   +E  +++   ++  KK           R+  N     +  
Sbjct: 285  AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K    ++ E K++  VLDF DL      +L K + ++ +     ++   
Sbjct: 345  KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T       N+      LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+    +G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             +S         +L    +   +S+   +         S  +     + +R IA  I  M
Sbjct: 515  GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566

Query: 357  IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + I +   D+    +L+SP+   +E+++ ++   +      + +  Y 
Sbjct: 623  ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +    K    I+ ++    ++   +       I       +       G +    L
Sbjct: 683  DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + K E + +  +    + 
Sbjct: 923  GNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLENIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  IPVKSPYKDEIQRYMNYEYQNEEATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
                    +       G  +H L+Q +    +  +++ +       +   +    + K +
Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101

Query: 825  -LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISI 873
             +  +    E+ +  T +        EV  S  +            + ++I G +D +  
Sbjct: 1102 NIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVLIQGVVDSMIE 1161

Query: 874  SQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             ++ I + +YKT              + +   +  Q+ +Y K ++     K     L + 
Sbjct: 1162 EEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFF 1221

Query: 928  SEPKV 932
                +
Sbjct: 1222 DGQHI 1226


>gi|254825170|ref|ZP_05230171.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194]
 gi|255519745|ref|ZP_05386982.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL J1-175]
 gi|293594413|gb|EFG02174.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194]
          Length = 1235

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/1025 (15%), Positives = 341/1025 (33%), Gaps = 132/1025 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   +  + E   P          L + + + + S      +   
Sbjct: 226  IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + S    +  T + K+   +E  +++   ++  KK           R+  N     +  
Sbjct: 285  AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K    ++ E K++  VLDF DL      +L K + ++ +     ++   
Sbjct: 345  KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T       N+      LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+    +G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             +S         +L    +   +S+   +         S  +     + +R IA  I  M
Sbjct: 515  GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566

Query: 357  IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + I +   D+    +L+SP+   +E+++ ++   +      + +  Y 
Sbjct: 623  ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +    K    I+ ++    ++   +       I       +       G +    L
Sbjct: 683  DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + K E + +  +    + 
Sbjct: 923  GNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  IPVKSPYKDEIQRYMNYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
                    +       G  +H L+Q +    +  +++ +       +   +    + K +
Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101

Query: 825  -LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISI 873
             +  +    E+ +  T +        EV  S  +            + ++I G +D +  
Sbjct: 1102 NIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVLIQGVVDSMIE 1161

Query: 874  SQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             ++ I + +YKT              + +   +  Q+ +Y K ++     K     L + 
Sbjct: 1162 EEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFF 1221

Query: 928  SEPKV 932
                +
Sbjct: 1222 DGQHI 1226


>gi|239826206|ref|YP_002948830.1| recombination helicase AddA [Geobacillus sp. WCH70]
 gi|239806499|gb|ACS23564.1| recombination helicase AddA [Geobacillus sp. WCH70]
          Length = 1244

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 143/1031 (13%), Positives = 333/1031 (32%), Gaps = 129/1031 (12%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            + + +      L +     + +  +          L+    L+     +  +E +  + S
Sbjct: 236  AAKRLIARALQLAHLPGGPLPRAENYRD------DLQLIAHLEALLD-RSWDELYEAMKS 288

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS---TL 124
              L++  + + +    ++ +++  L+++    L+  +D    +R       M +      
Sbjct: 289  LSLSRLKSCRGDEYDPQLVEEAKSLRDQAKKKLESLRDNVFSLRPTTWLRHMREMKPVVE 348

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD------VSAWIRYKIDQEIN 178
              + L K     ++  K++  ++DF DL      +L+  D      + +        +  
Sbjct: 349  TIVRLVKQFTEMFQARKREKGIVDFSDLEHYCLQILRHPDSTDGQWLPSDAALDYRAQFV 408

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             +L+DE QDT+++Q  ++R +T+        +     LF VGD KQSIY F  AEP   L
Sbjct: 409  EVLVDEYQDTNMVQEAILRLVTK-------GNEHTGNLFMVGDVKQSIYRFRLAEPMLFL 461

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + +          Q    I+L  +FRS A+IL   + +F    +      +       +
Sbjct: 462  SKYKRFTAD---GKQSGMKIDLSNNFRSRAEILHGTNFIFKQIMSETVGEMEYDEAAELK 518

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
               +      Q   +++    +  + ++       D    +  A ++A++I   I +   
Sbjct: 519  YGAVDYPDNEQAVPELIIIDRNSKDDEETGEFDTNDLAAAQLEARMMAKKI-KEIVSEPF 577

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                    + R    +DI++L+R       I    R       I V  +          I
Sbjct: 578  HVYDRKAKRMRRAMYRDIVILLRSMTAATQIMEEFRA----QGIPVYADLSSGYFQATEI 633

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY--------I 470
              +++L + I +   D+    +L+SP+   +E+++  I     +                
Sbjct: 634  SIMLSLLKVIDNPYQDIPLASVLRSPIVGLNENELALIRIHEKKGTFYEAMVSFLTKTVD 693

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
             K       K +   + +     +A+  S  D    +    +          G +    L
Sbjct: 694  DKEEAALQQKLRLFYEQLKHWRTMARQRSLADIIWQLYRDTQFYDFVGGLPGGKQRQANL 753

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E  S+  L   +  +E+           R+     + VRIMT+H++KGLE
Sbjct: 754  RALYDRARQYETTSFRGLFRFLRFIERLQNRGDDLGAARSLGEQEDVVRIMTIHSSKGLE 813

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             P+VF+        +    +   +   L           +          + +  +    
Sbjct: 814  FPIVFIAGLSRPFNTRDLYESYLLDKELGFAARFVDPKLRISYPTLPQIAIKQKKRLDFL 873

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND------------ 692
             E  R+LYV +TRA ++L +      + ++ +  ++          +D            
Sbjct: 874  AEEMRILYVALTRAKEKLYLIAAVKDAEKEVAKWKSTAMEEEWLLPDDVRASARCYLDWI 933

Query: 693  --------------------------ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                                        +  +++  +    +             T L+R
Sbjct: 934  GRALIRHRDGRNFGDLSYVCEKIASHPSIWHMEVIPASQLYDVDKEAEQMDEQIITALKR 993

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------------------- 766
             E +    + ++   +L S       E  +    T+                        
Sbjct: 994  GERVPNAGEWKEEVDRLLSWEYAYEKEMLVRAKQTVSELKRHREIFGENADRMPLHSFST 1053

Query: 767  ---KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYK 822
               +  +           +G  +H ++Q +        +            +L   ++ +
Sbjct: 1054 PLFERPMFMREKTLTPAEKGTAMHIVMQQVDLTAPITEETVREQIAKLVQMELLTHEQAE 1113

Query: 823  NL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDIIISGRIDQI 871
             + + S+    +  +     + D  Y EV  S  +            ++  ++ G ID +
Sbjct: 1114 AIDISSVVAFFDTEIGKRLRAADEVYREVPFSLALPAKEVYEDGVGEERKALVQGVIDCL 1173

Query: 872  SISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
               ++ + + ++KT            +  + I   +  Q+ +Y + ++  +      C L
Sbjct: 1174 FADEKGLVLIDFKTDTVTNRFAGGWHEAKQVIISRYKTQMQLYRRAVEQIWKINVDECYL 1233

Query: 925  IYVSEPKVFII 935
                   +  I
Sbjct: 1234 YLFDGSHLISI 1244


>gi|254931621|ref|ZP_05264980.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262]
 gi|293583174|gb|EFF95206.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262]
          Length = 1235

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 157/1025 (15%), Positives = 341/1025 (33%), Gaps = 132/1025 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   +  + E   P          L + + + + S      +   
Sbjct: 226  IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + S    +  T + K+   +E  +++   ++  KK           R+  N     +  
Sbjct: 285  AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K    ++ E K++  VLDF DL      +L K + ++ +     ++   
Sbjct: 345  KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T       N+      LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+    +G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             +S         +L    +   +S+   +         S  +     + +R IA  I  M
Sbjct: 515  GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566

Query: 357  IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + I +   D+    +L+SP+   +E+++ ++   +      + +  Y 
Sbjct: 623  ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +    K    I+ ++    ++   +       I       +       G +    L
Sbjct: 683  DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + K E + +  +    + 
Sbjct: 923  GNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  IPVKSPYKDEIQRYMNYEYQNEEATKIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
                    +       G  +H L+Q +    +  +++ +       +   +    + K +
Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101

Query: 825  -LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISI 873
             +  +    E+ +  T +        EV  S  +            + ++I G +D +  
Sbjct: 1102 NIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVLIQGVVDSMIE 1161

Query: 874  SQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             ++ I + +YKT              + +   +  Q+ +Y K ++     K     L + 
Sbjct: 1162 EEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFF 1221

Query: 928  SEPKV 932
                +
Sbjct: 1222 DGQHI 1226


>gi|226224875|ref|YP_002758982.1| ATP-dependent deoxyribonuclease (subunit A) [Listeria monocytogenes
            Clip81459]
 gi|225877337|emb|CAS06051.1| Putative ATP-dependent deoxyribonuclease (subunit A) [Listeria
            monocytogenes serotype 4b str. CLIP 80459]
          Length = 1235

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/1025 (15%), Positives = 341/1025 (33%), Gaps = 132/1025 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   +  + E   P          L + + + + S      +   
Sbjct: 226  IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + S    +  T + K+   +E  +++   ++  KK           R+  N     +  
Sbjct: 285  AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K    ++ E K++  VLDF DL      +L K + ++ +     ++   
Sbjct: 345  KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T       N+      LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+    +G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             +S         +L    +   +S+   +         S  +     + +R IA  I  M
Sbjct: 515  GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566

Query: 357  IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + I +   D+    +L+SP+   +E+++ ++   +      + +  Y 
Sbjct: 623  ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +    K    I+ ++    ++   +       I       +       G +    L
Sbjct: 683  DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + K E + +  +    + 
Sbjct: 923  GNATIRHSNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  IPVKSPYKDEIQRYMNYEYQNEEATKIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
                    +       G  +H L+Q +    +  +++ +       +   +    + K +
Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101

Query: 825  -LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISI 873
             +  +    E+ +  T +        EV  S  +            + ++I G +D +  
Sbjct: 1102 NIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVLIQGVVDSMIE 1161

Query: 874  SQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             ++ I + +YKT              + +   +  Q+ +Y K ++     K     L + 
Sbjct: 1162 EEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFF 1221

Query: 928  SEPKV 932
                +
Sbjct: 1222 DGQHI 1226


>gi|228996315|ref|ZP_04155959.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17]
 gi|228763419|gb|EEM12322.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17]
          Length = 1182

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 157/1042 (15%), Positives = 327/1042 (31%), Gaps = 146/1042 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ---------ASQTQCIEERF 66
            + +D+          I K + L+M    P    + +TLQ          ++  Q     +
Sbjct: 166  LLEDVKFQLETAEKHIRKAIELAMLPDGPAP--RIETLQADLVLLGTLSSAAYQSWTSVY 223

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-------KM 119
              + +         +K+   +EI K+   L+ K K    +  +                M
Sbjct: 224  EAMQNVSWQTLKRIKKSDYNEEIIKQVDSLRNKAKDEVKKLQEELFGRKPESFLRDFKDM 283

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKID 174
                   + + K     ++  K+   ++DF DL      +L +         + +  +  
Sbjct: 284  HPVLEKLVQIVKVFTERFQTIKRDKGMVDFTDLEHFCLQILSERTNDGELRPSPVALQYR 343

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP
Sbjct: 344  NKFAEVLVDEYQDTNFVQESIIKFVTKDS-------EQEGNLFMVGDVKQSIYRFRLAEP 396

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292
               L + +               I+L  +FRS  ++L   + +F          +  D+ 
Sbjct: 397  GLFLGKYKRFT---PEGIDGGMKIDLAKNFRSRHEVLAGTNFIFKQIMGETVGEIDYDAD 453

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              ++  +S             +      +    ++          +   A + AR +A  
Sbjct: 454  AELKLGASYPEGEDVAAELLCIHQSEGEESVEGEDGV--------EVEKAQLEARLMAQR 505

Query: 353  ISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I  M+ +     + K    R ++ +D ++L+R     P I    +       I V     
Sbjct: 506  IKAMVDSGYEVYDRKTDSMRPVKYRDFVILLRSMPWAPQIMEELK----LQGIPVYAELA 561

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---- 465
                +   +  +M + R I +   D+    +L+SP+   +++++  +     +       
Sbjct: 562  TGYFEATEVTVMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELAMLRAHEKKGSFYEVM 621

Query: 466  ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521
               +     +       K Q     +      A+  S  D    +               
Sbjct: 622  RSFLQGAPLEEEAELHGKLQWFYNLLQGWREFARQQSLSDLIWKVYRETGYYDFVGGLPA 681

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576
            G +    L    +   + E  S+  L   +  +E+           RA S   + VRIMT
Sbjct: 682  GKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALSEQEDVVRIMT 741

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE PVVF+   G +  +   +K+  +               + K        + 
Sbjct: 742  IHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIK 801

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677
            + +K     E  R+LYV +TRA ++LI+        ++                   ++ 
Sbjct: 802  RKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEIEKWLDSREHTDWLLPDYVRAG 861

Query: 678  QRTWYDMVYDSFHNDERVKKI-------------------------------KLTNSINK 706
               + D +  S +     + +                                      K
Sbjct: 862  ASCYLDWIAPSLYRHRDSEMLLELGQENIPNEIYEYDASWKVEVVDGSTLLAPEPVQEEK 921

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             E +               +EE   +L  E           K  + E      S   +  
Sbjct: 922  QELLEALREKKPVPLESERKEEVYARLTWEYAYEGATAHRAKQSVTEIKRNYQSEDGSDN 981

Query: 767  K-----------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAK 814
                                      +G  +H ++Q +        +          N +
Sbjct: 982  AFIKKLRTPIKTRPRFMEKKGLTYAEQGTAVHAVMQHVNLQKPITLETVQEQIAEMVNKE 1041

Query: 815  LWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPK----------KDI 862
            L   ++ + + +  I    +  +    ++  S   EV  +  ++  +          + +
Sbjct: 1042 LLTFEQAEEIAIDRIVAFFDTDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQNQSRESV 1101

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHV---PQEIEH----IPYTHIAQLSIYEKILKDSY 915
            ++ G ID +   +  + + ++KT       P   +     +   +  QLS+Y K L+ S 
Sbjct: 1102 LVQGVIDCMIEEEDGVVLIDFKTDTIEGKFPGGFDQAKPILAERYKVQLSLYAKALEKSL 1161

Query: 916  PNKSLV-CLLIYVSEPKVFIIP 936
             +  +    L +     +  + 
Sbjct: 1162 -HHPVKEKCLYFFDGNHIVHVD 1182


>gi|253682207|ref|ZP_04863004.1| recombination helicase AddA [Clostridium botulinum D str. 1873]
 gi|253561919|gb|EES91371.1| recombination helicase AddA [Clostridium botulinum D str. 1873]
          Length = 1232

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 159/999 (15%), Positives = 319/999 (31%), Gaps = 125/999 (12%)

Query: 42   GNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK 101
                 L     L   S        +  LS     +  T +     ++  +K  D++ K+K
Sbjct: 253  DFKNELAMIDDLI-LSAKSSWNSLYDNLSKIKFGRLKTCRGCE-DKKTQEKVKDIRNKVK 310

Query: 102  -KSQDEFIKIRDRFN-------TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
             + QD+  K    +N          ++    +   L       Y EAKK+  ++DF D  
Sbjct: 311  KQLQDDIKKKVISYNDDEIISDLINLYPIMKSLTDLVLKFMNRYAEAKKERGIIDFNDFE 370

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
                ++L   +    +  K+ Q    IL+DE QD++ +Q  +I ++              
Sbjct: 371  HFCLEILGNEE----VSLKLKQRYVEILVDEYQDSNYVQEAIINAIARQ----DEKTGKY 422

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIY F  A+P+      R           K   + L  +FRS  ++L  
Sbjct: 423  NNVFMVGDVKQSIYRFRQAKPEL---FLRKYNSYLEEDSTKERKVNLFKNFRSRKEVLDG 479

Query: 274  VDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
            V+ +F      N   L  D    +   +         +    V    +     + +    
Sbjct: 480  VNFIFKQIMSKNIGELEYDDNEALNLGADFQE---YREDKSLVGGAIELNLMEKIKDDIE 536

Query: 332  YFDSLPQESSASILARRIAYTISNMIG-------TDTIFSNGKKRVIQAKDILVLVRKRK 384
              +     S+  + AR +A  I+ ++                + R ++ +DI++L+R   
Sbjct: 537  GQEDDEILSNIQVEARLVAKRINELVNPTIGEPFKVYDNDLKEYRNVEYRDIVILLRSTS 596

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                +         +  I    +      + + IK +++L   I +   D+  + +L+SP
Sbjct: 597  SWAPV---FMDELKEKLIPAYADVGNGYFESVEIKTMLSLLEIIDNPRQDIPLIAVLRSP 653

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH-------VIKYIHELIHIAQF 497
            + +F+ +++  I  +  + +  YE I K       K           +K ++     +  
Sbjct: 654  IASFTPEELIDIRLENKDGD-FYEGILKILKSEDEKLHGLKKKCNIFLKKLNLWREKSIH 712

Query: 498  CSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-- 554
                +F   +           +   G +    L        + E+ SY  L   I+ +  
Sbjct: 713  IPIDEFIWYLYMDTGYYGYVGALSGGMQRQANLKILFQRARQYEKTSYKGLFNFITFINR 772

Query: 555  ---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                       +    N N VRIM++H +KGLE PVV L   G         +++     
Sbjct: 773  LKVSSGDMGSAKILGENDNVVRIMSIHKSKGLEFPVVILSALGKNFNMQDLNRRILYHDE 832

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            L   P       +      + + L K +K  +  E  R+LYV +TRA ++LI+    ++ 
Sbjct: 833  LGFGPDYINLEKRISYETVLKAALKKKIKLESLSEEMRILYVALTRAKEKLIMTGFVSSI 892

Query: 672  NEKKSNQRT-------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
             +                          + D +       +  + ++    I   E +  
Sbjct: 893  EKSSKQWGYSLQGDNYKLSEYQVLTGKNYLDWICPVIMRHKDGEILREFAGIESFEKVNL 952

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKK----------------------LFSPIKND 750
                   +       E ++    E  I                            P    
Sbjct: 953  IEDESKWKIKVNNISEILQNNNKEDIILDHIEEIENIEETSSFYDEINSRLNFKYPYIES 1012

Query: 751  INEPYILNPSTI-------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
               P +L  + +                       K +           ++G  +H ++Q
Sbjct: 1013 SKLPTLLTVTELKRMKNASMYEDYAKDMYTPKLIKKPSFMEKDKKLTGADKGTAMHAVMQ 1072

Query: 792  VIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSE 848
             +    E   +            +    ++ +++    I       +    + + +   E
Sbjct: 1073 KLDYKKELNIEEVKVQMENMVQKEFITKEQIESVDPSKILNFFNTSIGKRFLKAKEVERE 1132

Query: 849  VSVSGKIN------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            V    ++                + I+I G ID     +  I + +YK+ +    E + I
Sbjct: 1133 VPFHIQLKSTEIFEGLSKDIYSDEHIMIQGIIDCYFEEEDGIVLVDYKSDYFKEGEEQSI 1192

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
               + AQ+  Y + +++    K     L      K   I
Sbjct: 1193 IKKYKAQIEYYTRAIEELTNKKVKEKYLYLFYADKEVEI 1231


>gi|295109449|emb|CBL23402.1| recombination helicase AddA, Firmicutes type [Ruminococcus obeum
            A2-162]
          Length = 1241

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 158/1033 (15%), Positives = 327/1033 (31%), Gaps = 131/1033 (12%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKY---VSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            E    I +++   PYF  + +      +  + E           +L  A +   +  +  
Sbjct: 232  ERATHICREI-EGPYFYETALESDSLLLKEAKERAAKRDYNGMTSLLAAHKYARLSAKKD 290

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L            +K    +++      L ++L++      +           K      
Sbjct: 291  L--------NVDEEKKKQVKDLRDTEKHLWKELEEHYFSQSEEHILEALKYCRKPMEGLA 342

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL----KKRDVSAWIRYKIDQEINHILID 183
             +     A +   K++  VLDF D+     ++L     +  + +    ++      +++D
Sbjct: 343  RITLQFKAAFAAKKREKNVLDFSDMEHFALEILMKKEGEDIIPSTAAKELSARYEEVMVD 402

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QD++L+Q  +   ++             + +F VGD KQSIY F  A P+  + +   
Sbjct: 403  EYQDSNLVQEMITNLVS-------GWADGRKNIFMVGDVKQSIYRFRLARPELFMEKYHS 455

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSR 301
                      K   ++L  +FRS  ++L+ V+ +F     E+  G++ D    +   +S 
Sbjct: 456  YS----LEDAKEQRVDLYKNFRSRREVLSSVNYIFRQIMGEDIGGITYDDENALYTGASF 511

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
              +   V                +++      +    ++   + A  IA  I  M+G + 
Sbjct: 512  PEKEHIVGEKTNGPGNTTEVLLIEKDGEELSEEENGNQTVQELEALAIAQRIRKMVGNEE 571

Query: 362  IFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            +     G+ R ++  DI++L+R              +     I V    R        + 
Sbjct: 572  VLDKETGRYRKVEYGDIVILLRS---ATGWAEPFSQVLTSKGIPVYSASRTGYFSAQEVV 628

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET----------ETVYEY 469
             L+   R   +   D+    +L SP+   +  ++  + ++  E           E   E 
Sbjct: 629  TLLNYLRVCDNPLQDIPLTGVLHSPIVGCTVQELAILKSRCPEGMLYESLCAYCEAEREI 688

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
            + +   C   K       + E+ +++ +   H+    IL          +   G +    
Sbjct: 689  LTEEEKCLQEKLCAFQAQLEEMRNLSAYTPVHELILRILAKTGYADYVKAVPGGAQRGAN 748

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            L   +   +  E+ SY  L   +  +E     +          A    V+IMT+H +KGL
Sbjct: 749  LHMLVEKAMDYEKTSYRGLFNFVRYIEKLQKYEVDFGEVNLADAGSGAVQIMTIHKSKGL 808

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E PVVF    G Q        +  I P +     + +   +          + + L++ +
Sbjct: 809  EFPVVFAAGMGKQFNFQDINSRFLIHPDMGFGVDVILPEKRLILSAVHKQIIRRQLQRES 868

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
              E  R+LYV +TRA ++LII        +       + D          R K     + 
Sbjct: 869  LGEELRVLYVALTRAKEKLIITGCIGKLPDVCKALSVYMDHEEPLLPIAVRGKAKTYWSY 928

Query: 704  INKDEWIAYEWSTHHPENTPLEREETI--------------------------------- 730
            I               E    ER   +                                 
Sbjct: 929  ILPALARHPAMQGLLHEYGITERPAAVCEKENAQFIVHKVTVTELVQGEILGQTDTQMQE 988

Query: 731  -------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------DTKGKTNL 770
                         +++ +  +       P     N P  ++ S +       +   +  L
Sbjct: 989  KLLKEWDSNRIYDEEIHEFLEKRFSYQYPHAYLRNLPVKVSVSELKKRSWHGENDREEAL 1048

Query: 771  ESLL--------------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAK 814
             S                 + +   RG   H+L++ +  +               T+  K
Sbjct: 1049 FSEPDIVPLVPDFVSGGNEEYKGAARGTAYHRLMECLDYMSVDSESQIHKQITALTEAKK 1108

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAM----SCDSYSEVSVSGKINC--------PKKDI 862
            +   +     +  I   L + +         +   Y E       +          ++ +
Sbjct: 1109 MAYEEAQCIRIQDIMTFLHSEIGQRMKKAFEADQLYREQPFVLAQSMKNIEKDWNGEETV 1168

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ++ G ID   I  + I + +YKT      E +H+   +  QL  Y + L+     K    
Sbjct: 1169 LVQGIIDAYFIEDEEIVLVDYKTDRVRKGEEQHLIDLYHTQLEDYAQALERMLQKKVKET 1228

Query: 923  LLIYVSEPKVFII 935
             +   +  K+  +
Sbjct: 1229 YIYSFALGKMIPV 1241


>gi|167748814|ref|ZP_02420941.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662]
 gi|167651784|gb|EDR95913.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662]
          Length = 1186

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 172/993 (17%), Positives = 337/993 (33%), Gaps = 110/993 (11%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERF 66
             I KD   +     + + K    + ETG P          L+  + ++ A   +   E F
Sbjct: 213  EILKDAKAVAESACAIMKKAKEAASETGGPYFYLPTLTADLETMEEIRSAESYKDFGELF 272

Query: 67   SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +   L  +               +++ KK+ DL + ++ S     +        ++ 
Sbjct: 273  LSFTKPRLNGRKKKDDIIDKDLQEYCKDLRKKAYDLIDSIRSSYFYKPESEIIRQIRRVR 332

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK------RDVSAWIRYKID 174
            +     + L +     + E KK + +LDF DL     +LL          + + I  +  
Sbjct: 333  QPMEGFIGLTEKFYHRFMERKKLDNLLDFSDLEHLALELLTSGFSEDGTPIVSGIAKEKA 392

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +  + I IDE QD++ +Q  ++RS++               +F VGD KQSIYSF  A P
Sbjct: 393  EYFHEIYIDEYQDSNFLQDAILRSVSGQSL-------GEHNIFMVGDVKQSIYSFRLARP 445

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
            +  + +    +K     G+   +IEL  +FRS  ++L  V+ +F    +A   + + T  
Sbjct: 446  ELFIEKYHGFKKD----GKNSKLIELRNNFRSRREVLFTVNDIFYQIMHASLGNIEYTED 501

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            +    S                   +  N +    +  ++   +E    + AR IA  I 
Sbjct: 502  VALVPSFP-----------YEESGGAGGNAELLLVSRDWNDASEEDKDVLEARMIADRIK 550

Query: 355  NMIGTDTI--------FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             M+               +   R  + +DI++L+R  K         + +  D  I  + 
Sbjct: 551  KMVDGPEPQMVLDYDEEGSEVYRKAEYRDIVILLRSVKGNA---EKIQEVLMDAGIPAIS 607

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
            + +    D + ++ +++L   + +   D+     L+SP+   + +D+ K   +    +  
Sbjct: 608  SSQSGYFDTVEVRTVLSLLTVVDNLYADIEMAAFLRSPMIGMTGEDLAK--LKLGGKKKY 665

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEV 525
                   A     K    +  +  L     F S  +   L                G + 
Sbjct: 666  MYDCLTEAAGKDEKADTALSVLKRLREAKTFLSLRELLWLAFDLTGYYHYVGAMPQGAKR 725

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTA 580
               L          E + Y  +   I  +EQ          AN      N V I ++H +
Sbjct: 726  QGNLLMLAEQAKTYEASRYKGVFHFIRYMEQCREYQMDFGEANTLGGNENLVTITSIHKS 785

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE P+VFL  T  +         +   P     P +     ++K    +   + + L 
Sbjct: 786  KGLEYPIVFLAKTHKKFNLRDTGGSLLFHPDYFIGPDLVNIRQRTKEPTIMKGMISRQLV 845

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----------SNQRTWYDMVYDSFH 690
            K +  E  R+LYV +TRA ++LI+     + ++             + R++ + +  +  
Sbjct: 846  KDSLGEELRVLYVALTRAKEKLIMTGVQGSRHQPGGKGPVSYVDLLSARSYLEWLLMAAG 905

Query: 691  NDERVKKI--KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
            N E        L+            ++++       +  E++    + Q + +       
Sbjct: 906  NMEESPFEIHFLSEEDVALSSAEEVFTSYRDRGLLTDELESMAGSEEAQGMREAFAYRYP 965

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLS--------------------DNQTFNRGLIIHK 788
             D      L  S  + K  +                           +    +RG  +HK
Sbjct: 966  YDKERDGRLKYSVSEIKRMSQAAEPEESYKPEPQKERLYPKFLKEKKEASPASRGTAVHK 1025

Query: 789  LLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
            +L+++           +  I+ + +   K+    E       I   L + +         
Sbjct: 1026 VLELMDFSLDYTPELLEEQISRW-SSEEKIEEGMEKLIPREDILAFLNSDLGLRIKKAAG 1084

Query: 846  YSEVSVSGKINCPK------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
              E     +                   +++ G ID     +  + + +YKT    P E 
Sbjct: 1085 RKEQYKEAQFVMGVKFSEMEPEAKSRDYVVVQGIIDLYFKEEGELVLVDYKTDRVKPGEE 1144

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            E +   + AQL  Y+K L+     K +    IY
Sbjct: 1145 EVLAERYRAQLQYYKKALEQM-EQKKVKECYIY 1176


>gi|219853971|ref|YP_002471093.1| hypothetical protein CKR_0628 [Clostridium kluyveri NBRC 12016]
 gi|251764517|sp|B9DZK4|ADDA_CLOK1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|219567695|dbj|BAH05679.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1238

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 319/1019 (31%), Gaps = 147/1019 (14%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
            +E          +++ +       +E           +  + + + + +    K+ + ++
Sbjct: 246  LEHYLEPFKSDIESIDKLINITTWDEIRDEFIKLSFNKLPSKRTDPLVKSYKDKARNTRD 305

Query: 99   K----LKKSQDEFIKIRDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
            +    L   +++ I   D       +++    +   L       Y   K +  ++DF D+
Sbjct: 306  EVKKKLISIREDIILCTDDIYENFKEVYPLMKSLTFLVMDFYEKYHNKKSERNMIDFNDI 365

Query: 153  IINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
                 ++L  +D     + +    +  +    I IDE QD++ +Q  ++  ++       
Sbjct: 366  EHFCLEILTSKDKNGDIIPSEAALEYREYFEEIFIDEYQDSNEVQEVIMNMISRKNIYA- 424

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                    LF VGD KQSIY F  A P+  L +     ++    G K   I+L  +FRS 
Sbjct: 425  -------NLFMVGDVKQSIYRFRQARPELFLEKYNSYDEK---EGSKNRKIKLSENFRSR 474

Query: 268  ADILTVVDKVFSIPENAQGLSEDSTTT------IRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             +I+  ++ +F      +    D           R+        G V+L      +    
Sbjct: 475  KEIIDAINYIFKQIMCREVGELDYGEEECLKSSARYEPFEGNCGGDVELHVVDKKE---- 530

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG--------TDTIFSNGKKRVIQA 373
                 E+     +      + S+ AR +A  I+ ++                   R I  
Sbjct: 531  ----NENKLEDENEEELLDAISVEARLVASKINELVNPSLDQYSFKVYDKEIDNYRSIMY 586

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            KDI++L+R    T           N+  I V  +        + IK +++L + I +   
Sbjct: 587  KDIVILMRA---TQNWAPAFVEELNNSGIPVFADTSVGYFQAIEIKTIISLLQIIDNPLQ 643

Query: 434  DLSFVCMLKSPLFNFSEDDIFKIC-------------TQRHETETVYEYIQKFANCGISK 480
            D+ F+ +L+SP+  FS +D+  +                +  +  +   ++        K
Sbjct: 644  DIPFIALLRSPIGGFSPEDLIDLRVVNREISFYEILKAIKEHSLELKYSLEHIDERLEYK 703

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN 539
             +     +             +F   I               G +    L        + 
Sbjct: 704  VEQFFNKLCLWRRKVIHMPIDEFIWHIYIETGYYGFVGAMPGGIQRQANLRMLFERAKQY 763

Query: 540  EQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +  SY  L   I+ +             +    N N VRIM++H +KGLE PV+ L   G
Sbjct: 764  KNISYKGLFNFINFINKLKSSSTDMGNAKILGENENVVRIMSIHKSKGLEFPVIILSGAG 823

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +       K +     L   P              +   L + LK  T  E  R+LYV 
Sbjct: 824  KRFNLTDINKSVLFHKELGLGPEYVNSERHISYPTIVKQVLKRKLKMETLSEEMRILYVA 883

Query: 655  MTRASDQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDSFHNDERV 695
             TRA ++LII    +                            R + D +  +       
Sbjct: 884  FTRAKEKLIITGTVDNIENTFQRWCEAAYCEEDKLPEYSLINSRNFLDWIGPAVARHPCG 943

Query: 696  KKIKLTNSIN---------KDEWIAYEWSTHHPENTP--------------LEREETIKQ 732
            + I+                 +W  + +S  + ++T               LE +   + 
Sbjct: 944  EIIRKVCPFEYNLNLITGDDSKWKVFVYSKDNFKSTLDENIDEDIIGKIKSLELDNNKEI 1003

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT------------------KGKTNLESLL 774
              +E           +         + S +                      K       
Sbjct: 1004 YKNEVYRRLNWTYKYEQSSKIAAKFSVSELKRRFKLIDTENGIEFMEPIYLKKPAFLRES 1063

Query: 775  SDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITR 830
                   RG+++H ++Q I         + K  +     +        E K++ +  I +
Sbjct: 1064 KGLTPSERGIVMHLVMQHIDIDKVGSYEQIKEQVDKLVFRE--FITEAEAKSISVYKIIK 1121

Query: 831  LLENPMMTTAM-SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQISISQQN 877
               + +      S + Y EV    +I                + ++I G ID        
Sbjct: 1122 FFNSEIGIRMKKSNNVYREVPFYMEIESTELYKQLPQHIYRDEKVLIQGIIDCYFEENNE 1181

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            + + +YKT H    +I+ I   +  Q+  Y + L+     K     L   S+  +  + 
Sbjct: 1182 LILVDYKTDHV--GDIDSIKEKYQVQIYYYGRALEKLTGKKVKKKYLYLFSKDYILDLS 1238


>gi|153953342|ref|YP_001394107.1| ATP-dependent exonuclease [Clostridium kluyveri DSM 555]
 gi|251764518|sp|A5N628|ADDA_CLOK5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|146346223|gb|EDK32759.1| Predicted ATP-dependent exonuclease [Clostridium kluyveri DSM 555]
          Length = 1235

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 319/1019 (31%), Gaps = 147/1019 (14%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
            +E          +++ +       +E           +  + + + + +    K+ + ++
Sbjct: 243  LEHYLEPFKSDIESIDKLINITTWDEIRDEFIKLSFNKLPSKRTDPLVKSYKDKARNTRD 302

Query: 99   K----LKKSQDEFIKIRDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
            +    L   +++ I   D       +++    +   L       Y   K +  ++DF D+
Sbjct: 303  EVKKKLISIREDIILCTDDIYENFKEVYPLMKSLTFLVMDFYEKYHNKKSERNMIDFNDI 362

Query: 153  IINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
                 ++L  +D     + +    +  +    I IDE QD++ +Q  ++  ++       
Sbjct: 363  EHFCLEILTSKDKNGDIIPSEAALEYREYFEEIFIDEYQDSNEVQEVIMNMISRKNIYA- 421

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                    LF VGD KQSIY F  A P+  L +     ++    G K   I+L  +FRS 
Sbjct: 422  -------NLFMVGDVKQSIYRFRQARPELFLEKYNSYDEK---EGSKNRKIKLSENFRSR 471

Query: 268  ADILTVVDKVFSIPENAQGLSEDSTTT------IRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             +I+  ++ +F      +    D           R+        G V+L      +    
Sbjct: 472  KEIIDAINYIFKQIMCREVGELDYGEEECLKSSARYEPFEGNCGGDVELHVVDKKE---- 527

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG--------TDTIFSNGKKRVIQA 373
                 E+     +      + S+ AR +A  I+ ++                   R I  
Sbjct: 528  ----NENKLEDENEEELLDAISVEARLVASKINELVNPSLDQYSFKVYDKEIDNYRSIMY 583

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            KDI++L+R    T           N+  I V  +        + IK +++L + I +   
Sbjct: 584  KDIVILMRA---TQNWAPAFVEELNNSGIPVFADTSVGYFQAIEIKTIISLLQIIDNPLQ 640

Query: 434  DLSFVCMLKSPLFNFSEDDIFKIC-------------TQRHETETVYEYIQKFANCGISK 480
            D+ F+ +L+SP+  FS +D+  +                +  +  +   ++        K
Sbjct: 641  DIPFIALLRSPIGGFSPEDLIDLRVVNREISFYEILKAIKEHSLELKYSLEHIDERLEYK 700

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN 539
             +     +             +F   I               G +    L        + 
Sbjct: 701  VEQFFNKLCLWRRKVIHMPIDEFIWHIYIETGYYGFVGAMPGGIQRQANLRMLFERAKQY 760

Query: 540  EQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +  SY  L   I+ +             +    N N VRIM++H +KGLE PV+ L   G
Sbjct: 761  KNISYKGLFNFINFINKLKSSSTDMGNAKILGENENVVRIMSIHKSKGLEFPVIILSGAG 820

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +       K +     L   P              +   L + LK  T  E  R+LYV 
Sbjct: 821  KRFNLTDINKSVLFHKELGLGPEYVNSERHISYPTIVKQVLKRKLKMETLSEEMRILYVA 880

Query: 655  MTRASDQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDSFHNDERV 695
             TRA ++LII    +                            R + D +  +       
Sbjct: 881  FTRAKEKLIITGTVDNIENTFQRWCEAAYCEEDKLPEYSLINSRNFLDWIGPAVARHPCG 940

Query: 696  KKIKLTNSIN---------KDEWIAYEWSTHHPENTP--------------LEREETIKQ 732
            + I+                 +W  + +S  + ++T               LE +   + 
Sbjct: 941  EIIRKVCPFEYNLNLITGDDSKWKVFVYSKDNFKSTLDENIDEDIIGKIKSLELDNNKEI 1000

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT------------------KGKTNLESLL 774
              +E           +         + S +                      K       
Sbjct: 1001 YKNEVYRRLNWTYKYEQSSKIAAKFSVSELKRRFKLIDTENGIEFMEPIYLKKPAFLRES 1060

Query: 775  SDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITR 830
                   RG+++H ++Q I         + K  +     +        E K++ +  I +
Sbjct: 1061 KGLTPSERGIVMHLVMQHIDIDKVGSYEQIKEQVDKLVFRE--FITEAEAKSISVYKIIK 1118

Query: 831  LLENPMMTTAM-SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQISISQQN 877
               + +      S + Y EV    +I                + ++I G ID        
Sbjct: 1119 FFNSEIGIRMKKSNNVYREVPFYMEIESTELYKQLPQHIYRDEKVLIQGIIDCYFEENNE 1178

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            + + +YKT H    +I+ I   +  Q+  Y + L+     K     L   S+  +  + 
Sbjct: 1179 LILVDYKTDHV--GDIDSIKEKYQVQIYYYGRALEKLTGKKVKKKYLYLFSKDYILDLS 1235


>gi|229114675|ref|ZP_04244089.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-3]
 gi|228668740|gb|EEL24168.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-3]
          Length = 1195

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 162/1039 (15%), Positives = 327/1039 (31%), Gaps = 139/1039 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-------KKAQTLQQASQTQCIEERFSL 68
            + +D+          I K   L+M    P               +  ++  +     +  
Sbjct: 179  LLEDVRFQLETAEQHIRKATELAMLPDGPAPRVETLQADAALLGMLSSAARESWTSVYEA 238

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121
            + +         +K+   +++ K+   L+ K K    +  +                M  
Sbjct: 239  MQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMHP 298

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQE 176
                 + L K     ++  K+   ++DF DL      +L ++        + +  +   +
Sbjct: 299  VLEKLVKLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENDEVKPSAVALQYRNK 358

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP  
Sbjct: 359  FAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPGL 411

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
             L + +   +  +  G K   I+L  +FRS  ++L   + +F      +    D      
Sbjct: 412  FLGKYKRFTQEGSGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAE 468

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             +      +G     E +  Q   +   + E  T           A + AR +A  I  M
Sbjct: 469  LKLGASYLIGEDVAAELLCIQQTEEEVLEGEEGTEV-------EKAQLEARLMAQRIKAM 521

Query: 357  IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            + +     + K    R +Q +D ++L+R                    I V  +      
Sbjct: 522  VDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLATGYF 577

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-------V 466
            +   +  +M + R I +   D+    +L+SP+   +++++  +     +          +
Sbjct: 578  EATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSSFL 637

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525
                 +       K +     +      A+  S  D    + G             G + 
Sbjct: 638  KGAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAGKQR 697

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTA 580
               L    +   + E  S+  L   +  +E+           RA     + VRIMT+H +
Sbjct: 698  QANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIHKS 757

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE PVVF+   G +  +   +K+  +               + K        + + +K
Sbjct: 758  KGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMK 817

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTW 681
                 E  R+LYV +TRA ++LI+      +N++                   ++    +
Sbjct: 818  MELIAEEMRVLYVALTRAKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCY 877

Query: 682  YDMVYDSFHNDERVK-------------------------------KIKLTNSINKDEWI 710
             D +  S +     +                                        K E +
Sbjct: 878  LDWIAPSLYRHRDSEILLELGQGSIPDEIYGYDTSWKVEVVDGNTLLAPEPVQEEKQELL 937

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK--- 767
                           +EE   +LM +    +      K  + E      S   +      
Sbjct: 938  EALREKKAVPLQSERKEEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNAFIR 997

Query: 768  --------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPA 818
                                  RG  +H ++Q +        +          N +L   
Sbjct: 998  KLRAPIKTRPRFMEKKGLTYAERGTAVHTVMQHVDLKKPITVEVLQEQIAGMVNKELLTF 1057

Query: 819  KEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIIISG 866
            ++ + + +  +    ++ +    ++  S   EV  +  ++             + I++ G
Sbjct: 1058 EQAEEIAIEKVISFFDSDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGNSGESILVQG 1117

Query: 867  RIDQISISQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPNKS 919
             ID +   +  I + ++KT       P   E         +  QLS+Y K L+ S     
Sbjct: 1118 VIDCMIEEEDGITLIDFKTDTIEGKFPGGFEQAKPILEDRYKVQLSLYAKALEKSL-QHP 1176

Query: 920  LV-CLLIYVSEPKVFIIPQ 937
            +    L +     V  I +
Sbjct: 1177 VKEKCLYFFDGNYVVNIEE 1195


>gi|317470347|ref|ZP_07929738.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA]
 gi|316902151|gb|EFV24074.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA]
          Length = 1186

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 172/993 (17%), Positives = 337/993 (33%), Gaps = 110/993 (11%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERF 66
             I KD   +     + + K    + ETG P          L+  + ++ A   +   E F
Sbjct: 213  EILKDAKAVAESACAIMKKAKEAASETGGPYFYLPTLTADLETMEEIRSAESYKDFGELF 272

Query: 67   SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +   L  +               +++ KK+ DL + ++ S     +        ++ 
Sbjct: 273  LSFTKPRLNGRKKKDDIIDKDLQEYCKDLRKKAYDLIDSIRSSYFYKPESEIIRQIRRVR 332

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK------RDVSAWIRYKID 174
            +     + L +     + E KK + +LDF DL     +LL          + + I  +  
Sbjct: 333  QPMEGFIGLTEKFYHRFMERKKLDNLLDFSDLEHLALELLTSGFSEDGTPIVSGIAKEKA 392

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +  + I IDE QD++ +Q  ++RS++               +F VGD KQSIYSF  A P
Sbjct: 393  EYFHEIYIDEYQDSNFLQDAILRSVSGQSL-------GEHNIFMVGDVKQSIYSFRLARP 445

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
            +  + +    +K     G+   +IEL  +FRS  ++L  V+ +F    +A   + + T  
Sbjct: 446  ELFIEKYHGFKKD----GKNSKLIELRNNFRSRREVLFTVNDIFYQIMHASLGNIEYTED 501

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            +    S                   +  N +    +  ++   +E    + AR IA  I 
Sbjct: 502  VALVPSFP-----------YEESGGAGGNAELLLVSRDWNDASEEDKDVLEARMIADRIK 550

Query: 355  NMIGTDTI--------FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             M+               +   R  + +DI++L+R  K         + +  D  I  + 
Sbjct: 551  KMVDGPEPQMVLDYDEEGSEVYRKAEYRDIVILLRSVKGNA---EKIQVVLMDAGIPAIS 607

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
            + +    D + ++ +++L   + +   D+     L+SP+   + +D+ K   +    +  
Sbjct: 608  SSQSGYFDTVEVRTVLSLLTVVDNLYADIEMAAFLRSPMIGMTGEDLAK--LKLGGKKKY 665

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEV 525
                   A     K    +  +  L     F S  +   L                G + 
Sbjct: 666  MYDCLTEAAGKDEKADTALSVLKRLREAKTFLSLRELLWLAFDLTGYYHYVGAMPQGAKR 725

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTA 580
               L          E + Y  +   I  +EQ          AN      N V I ++H +
Sbjct: 726  QGNLLMLAEQAKAYEASRYKGVFHFIRYMEQCREYQMDFGEANTLGGNENLVTITSIHKS 785

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE P+VFL  T  +         +   P     P +     ++K    +   + + L 
Sbjct: 786  KGLEYPIVFLAKTHKKFNLRDTGGSLLFHPDYFIGPDLVNIRQRTKEPTIMKGMISRQLV 845

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----------SNQRTWYDMVYDSFH 690
            K +  E  R+LYV +TRA ++LI+     + ++             + R++ + +  +  
Sbjct: 846  KDSLGEELRVLYVALTRAKEKLIMTGVQGSRHQPGGKGPVSYVDLLSARSYLEWLLMAAG 905

Query: 691  NDERVKKI--KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
            N E        L+            ++++       +  E++    + Q + +       
Sbjct: 906  NMEESPFEIHFLSEEDVALSSAEEVFTSYRDRGLLTDELESMAGSEEAQGMREAFAYRYP 965

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLS--------------------DNQTFNRGLIIHK 788
             D      L  S  + K  +                           +    +RG  +HK
Sbjct: 966  YDKERDGRLKYSVSEIKRMSQAAEPEESYKPEPQKERLYPKFLKEKKEASPASRGTAVHK 1025

Query: 789  LLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
            +L+++           +  I+ + +   K+    E       I   L + +         
Sbjct: 1026 VLELMDFSLDYTPELLEEQISRW-SSEGKIEEGMEKLIPREDILAFLNSDLGLRIKKAAG 1084

Query: 846  YSEVSVSGKINCPK------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
              E     +                   +++ G ID     +  + + +YKT    P E 
Sbjct: 1085 RKEQYKEAQFVMGVKFSEMEPEAKSRDYVVVQGIIDLYFKEEGELVLVDYKTDRIGPGEE 1144

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            E +   + AQL  Y+K L+     K +    IY
Sbjct: 1145 EILAERYRAQLQYYKKALEQM-EQKKVKECYIY 1176


>gi|28210435|ref|NP_781379.1| ATP-dependent nuclease subunit A [Clostridium tetani E88]
 gi|28202872|gb|AAO35316.1| ATP-dependent nuclease subunit A [Clostridium tetani E88]
          Length = 1147

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 161/1004 (16%), Positives = 334/1004 (33%), Gaps = 134/1004 (13%)

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR- 111
            +++             L  F L++    +     ++   K+  +++K K+S ++  +   
Sbjct: 151  IKKLLGEHEDNNIIDGLLCFDLSRLPGKRLKGEVKDTKDKAIKVRDKAKESINKLKEDIG 210

Query: 112  -----DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV- 165
                    N   ++      + L       Y++ K++  ++DF D+     ++L   D  
Sbjct: 211  LGYENVEKNMKDLYPRMKCLIELVMKFTMEYDKRKREKNIIDFNDIEHFALEILTDFDKE 270

Query: 166  ----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP---RTLFA 218
                 + +  +   +   +L+DE QD++ +Q  ++ S++    +             LF 
Sbjct: 271  EKVNPSSVALEYRNKFEEVLVDEYQDSNFVQEAILNSISRQNNLQSKIEDEKLIIPNLFM 330

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            VGD KQSIY F  A+P+      R     +     K+  I+L  +FRS  +I+  V+ +F
Sbjct: 331  VGDIKQSIYRFRQAKPEL---FLRKYNNYSEEVSSKYRKIKLFKNFRSRKNIIEGVNFIF 387

Query: 279  SIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQL-WEQVVSQHDSQCNPQQESWTSYFDS 335
                  N   L       + + +          L  +  +   D + N +  +     + 
Sbjct: 388  KQIMSKNVGELEYGEEEKLNYGADFKELEEGKDLERDIEIHLMDKEENIEPYTEELGLEE 447

Query: 336  LPQESSASILARRIAYTISNMIGTDT-------IFSNGKKRVIQAKDILVLVRKRKDTPL 388
                 +  + AR +   I+N+I  +          S  + R +Q +DI++L+R       
Sbjct: 448  EENIDNIQLEARMVGKVINNLIKDEESNSFMIQDKSTKEYRKVQYRDIVILMRATSAMAN 507

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            +        N+  I V  +      + + IK +M++ + + +   D+  + +L+ P+F+F
Sbjct: 508  V---FTEELNNVGIPVFADTSSGYFETIEIKTIMSILQIVDNPRQDIPMLSVLRCPIFSF 564

Query: 449  SEDDIFKIC------------TQRHETETVYEYIQKFANCGISKFQH----VIKYIHELI 492
            S +DI  I              +    E   E  + + +    + +      ++ ++   
Sbjct: 565  SPEDIIDIRLINRDISIYECLEKIKNKEPCLEEEKVYIDEINEELKERIISFLEKLNLWR 624

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
              +   S   F   +               G +    L        + E  SY      I
Sbjct: 625  DNSIHMSIDQFIWYLYTETGYYGYVGAMPGGVQRQANLRLLFERAKQYENTSYKGFFNFI 684

Query: 552  SELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            S +             +    N N V+IM++H +KGLE PVV +  TG         K +
Sbjct: 685  SFINKLRNTSGDMGSAKILGENENVVKIMSIHKSKGLEFPVVIMAGTGRGFNLQDIRKDI 744

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                 L   P       + K    +   + + +K  T  E  R+LYV  TRA ++LII  
Sbjct: 745  LFHHQLGFGPEYVDLDKKIKYPTIMKKIIAQKIKLETFSEEMRILYVAFTRAKEKLIITG 804

Query: 667  HSNT----------SNEKKSNQRTWYDMVYDSFHNDERVKKIKL---------------- 700
                          +  +   +   Y+++    + D  +  +                  
Sbjct: 805  SVKNIEKSMSEWCFTGGEGGKRLPEYELIKSKNYLDWIMPTLTRHICFQKHIRRQFPEIE 864

Query: 701  --TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK---------------L 743
                  +   W    W         LE  +    + + +   +K                
Sbjct: 865  IKNGIEDNSCWSLQLWHKKELLEDKLEETKERDIIKEIEWNKEKSCKNIHEEEVEKRLNW 924

Query: 744  FSPIKNDINEPYILNPSTIDTKGK-------------------TNLESLLSDNQTFNRGL 784
                      P  L+ S I ++ +                              +   G 
Sbjct: 925  KYKYIKASEIPAKLSVSEIKSRFELLDTGNSDNLIEENIFFRKPQFLEEFKKFSSAEIGT 984

Query: 785  IIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTA 840
              H ++Q I           +N I     +       ++ K + +  I   +++P++   
Sbjct: 985  FTHLVIQHIDFQRTNSIEDIENQIEELIKRE--FLTKEQAKVINIKKIYNFIKSPIVDRI 1042

Query: 841  -MSCDSYSEVSVSGKIN-----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
              S +   E S   +++              + I+I G ID       ++ I +YKT + 
Sbjct: 1043 KKSDNVRREESFYIEMSSKDLIPSISEVYKDEKILIQGVIDLYFQEGNDLIILDYKTDYI 1102

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
              ++IE     +  Q+  Y+K L+     K     L   +  ++
Sbjct: 1103 --EDIEKTKEKYYLQIDYYKKALEKITGKKVKEKYLYLFNIDRL 1144


>gi|229541419|ref|ZP_04430479.1| recombination helicase AddA [Bacillus coagulans 36D1]
 gi|229325839|gb|EEN91514.1| recombination helicase AddA [Bacillus coagulans 36D1]
          Length = 1243

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/1040 (15%), Positives = 333/1040 (32%), Gaps = 140/1040 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEER 65
              +  D+          + +   L++E G P          +K    L  A      +  
Sbjct: 224  AAVKADIHLQLQAAKDMLGEAYGLALEPGGPAPRAENYLNDMKITDRLLAAIH-GPWQGL 282

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-------K 118
            +  ++++  T+    + +    ++ K + DL++  KK+ ++  K               +
Sbjct: 283  YEEMNAWQFTRAKACKGDAYEAKLVKAADDLRKSAKKTLEDLKKDFFSRKPASFLKDMQE 342

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKI 173
            M        TL K     Y   K +  ++DF DL     D+L +++       + +    
Sbjct: 343  MRPVIAELRTLVKKFAEAYGAVKAEKGIVDFSDLEHFCLDILAEKNEDGSLTPSEVAKAY 402

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q+   +LIDE QD +++Q  ++  + +               F VGD KQSIY F  AE
Sbjct: 403  QQQFKEVLIDEFQDVNMVQETIMNLVAKGA-------GFDGNRFMVGDVKQSIYRFRLAE 455

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN--AQGLSEDS 291
            P   L++ R       + G     I+L  +FRS  +IL   + +F          ++ DS
Sbjct: 456  PNLFLKKYRDFDPEGRDTGL---RIDLSKNFRSRKEILDGTNFIFKQIMGLKVGEMAYDS 512

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
               +   +S   +   V++     +    + +   E          +   + + AR +A 
Sbjct: 513  QAALVAGASYPERDHPVKVALIDQADEAIEEDISDEETLD----RAELEQSQLEARYLAR 568

Query: 352  TISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
             I  +I  + +++   G  R I+ KDI++L+R     P I    +       I +     
Sbjct: 569  EIKKLIDEEQVYNPKTGTFRPIRYKDIVILMRSMAWAPTIMEELK----QAGIPLYTELS 624

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET------ 463
                D   +  +++L + I +   D+    +L+SP+    E+ +  I             
Sbjct: 625  TGYFDATEVSIMLSLLKVIDNPYQDIPLAVVLRSPIVGLDEEALALIRIHEKRGPYYEAV 684

Query: 464  -ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521
             + + +           K    ++ +     +A+          +    +          
Sbjct: 685  KKFIADRPDPEEEEAHEKVSRFMEKLSVWRSVARQGDLSSLIWQLYRDTQFYDFAGGLPG 744

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576
            G +    L    +   + E+ S+  L   +  +E+           RA S   + VR+MT
Sbjct: 745  GKQRQANLRALYDRARQYEETSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMT 804

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE PVVF+     +       +   +               +    +       
Sbjct: 805  IHASKGLEFPVVFVAGLNRKFNMRDINQAFLLDKDFGFASKYIHPEKRITYPSLPQLAFK 864

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677
            +  K     E  R+LYV +TRA ++L +        ++                   ++ 
Sbjct: 865  RKKKLEMLAEEMRVLYVALTRAKEKLYLVGTVKNLGKRLEKWGKTKRQEDWLLPDHVRAA 924

Query: 678  QRTWYDMV----------------------------YDSFHNDERVKKIKLTNSINKDEW 709
              T+ D +                              +    E+   I+    + + +W
Sbjct: 925  AGTYLDWIIPSLSRHADGTVLFGSDGRVVLDDPSKWQIAVLPKEQFADIQEPEQVGEADW 984

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN----------- 758
                 +          + +   +L          F   K  ++E   ++           
Sbjct: 985  QHQVKAGLPVAAESAYKAQVFGRLSFRYSNEPATFRRAKQSVSELKRMHEEHDETNGTRF 1044

Query: 759  -PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE---HKRKNFITSYCTKNAK 814
             P+                     RG  +H ++Q I           +  +     +   
Sbjct: 1045 IPNAEKHIFDRPRFMQEKSITPAERGTAMHMVMQHIPFDAPPTYASVEALVEEMVKQE-- 1102

Query: 815  LWPAKEYKNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDII 863
            L   ++   +    + R  E  +    ++      E+  S  +             + ++
Sbjct: 1103 LLTEEQADAIAAEQLVRFFETDIGRRILAAGRVMREMPFSLSVPAAEIYRDASLADEHVL 1162

Query: 864  ISGRIDQISISQQNIFIFEYKTH----HHVPQEIEH---IPYTHIAQLSIYEKILKDSYP 916
            I G  D ++  +  + + ++KT            E    +   +  QL++Y + L+    
Sbjct: 1163 IQGIFDCVAEEKDGLVLLDFKTDNIHGRFKGGFEEAEPVLRKRYEVQLALYSRALETIL- 1221

Query: 917  NKSLVC-LLIYVSEPKVFII 935
             K +    L +     +  I
Sbjct: 1222 KKKVKAQYLYFFDGGHLLEI 1241


>gi|326389380|ref|ZP_08210948.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200]
 gi|325994743|gb|EGD53167.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200]
          Length = 1230

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 157/989 (15%), Positives = 334/989 (33%), Gaps = 134/989 (13%)

Query: 50   AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ---EINKKSPDLKEKLKKSQ-- 104
            A++L++    +  EE    +++    +     K+   +   E+ K   ++K K+K+ +  
Sbjct: 256  AESLEKLLDCENWEEFRKQINAIEFDRLPRAGKDADPKVKDEVTKIRNEVKAKIKEIRNK 315

Query: 105  ---DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
               D+  KI +       + +  A + L    +  Y + K++  ++DF D+      +L 
Sbjct: 316  FFSDDIEKIEEEIKAL--YPNMKALVDLILLFDKKYTDKKREKGIIDFNDIEHFALQILT 373

Query: 162  KRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            + D       +       ++   I +DE QD++LIQ  ++ ++  +              
Sbjct: 374  EVDENGNVKPSEAALMYREKFQEIFVDEYQDSNLIQEVILSTIAREDT---------PNR 424

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F VGD KQSIY F  A P     +      +  +       I L  +FRS   I+  V+ 
Sbjct: 425  FMVGDVKQSIYRFRQANPHIFFEKYNTYSSKEEDKN---KKILLYKNFRSRPQIIDAVNF 481

Query: 277  VFSIPENAQGLSEDSTTTIRHR--------SSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            +F    +      D T   +                 G V++      + + +   ++E 
Sbjct: 482  IFKKIMSKNVGEIDYTEEEKLNCGADFGTPPLDAIVGGPVEIHLI---EKNDETPEEEEL 538

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDT-------IFSNGKKRVIQAKDILVLVR 381
                 +      +  + AR +A  I  ++  +          +    R ++ +DI++L+R
Sbjct: 539  EVYGEEEEEIIDNIQVEARVVAQRIKELVTQNEKNTFMVYDKNLKNYRPVEYRDIVILLR 598

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                T     +      +  I    +      +   IK +++L + I +   D+  + +L
Sbjct: 599  A---TERWAPVFLEEFINVGIPAFADTGTGYFETTEIKTIISLLQVIDNPMQDIPLLAVL 655

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQ--KFANCGISKFQHVIKYIHELIHIAQFCS 499
            +SP+F+F  +++  I  +           +  +  +    K +  ++ + +    A +  
Sbjct: 656  RSPIFSFIPEELIDIRLEEPNRAIYEALKKVSQREDELGQKAKSFLESLKKWQEKAIYMP 715

Query: 500  PHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---- 554
              +F   +               G +    L        + E+ S+  L   I+ +    
Sbjct: 716  VDEFLWYLYQDTGYYAYVGAMPQGVQRQANLRILFERAKQYEETSFKGLFNFINFINRLK 775

Query: 555  -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                     +    N N VRIM++H +KGLE PVV +   G Q       + +     L 
Sbjct: 776  VSSGDMGSAKIVGENENVVRIMSIHKSKGLEFPVVIVAGLGKQFNLKDLSQSVLYHHLLG 835

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              P    +  +    + +   +   +K  +  E  R+LYV +TRA ++LI+        E
Sbjct: 836  LGPEFVDFKRRISYPSIVKEAIKNKIKLESLSEEMRVLYVALTRAKEKLILVGSVKDIKE 895

Query: 674  KKSNQ------------------RTWYDMVYDSFHNDERVKKIKLTNSIN---------- 705
            K                      +++ D +  +      +K ++    +           
Sbjct: 896  KVKKWCNIAMLESKVPEYEILKGKSYIDWIGPAVIKHADLKPLRDFAQVQYVAVEEDSSQ 955

Query: 706  ------------------KDEWIAYEWSTHHPENTPLER--EETIKQLMDEQKIPKKLFS 745
                              ++E    +   +   ++P     +E  ++L       K    
Sbjct: 956  WQVRIWNKKDVIFDKKQVEEETNLLQRLENLDLDSPSSEFYDEVTRRLNYVYLYEKACHL 1015

Query: 746  PIKNDINEPYILNPSTI-----------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
            P K  + E   +    +                              +G+ +H ++Q + 
Sbjct: 1016 PAKLSVTEIKRILNEEVIDEDTTSIFEKTVLKIPAFLEKKKGLTAAEKGIAMHLVMQKLD 1075

Query: 795  ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEV 849
                L     K  I +   +   +    + K + +  I       +    + S +   EV
Sbjct: 1076 LNGDLSVEGIKKQIKNMVDRE--ILTEAQSKEIDIRRIEEFFRASLGRRMLSSQNVKREV 1133

Query: 850  SVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
                KI               + I + G ID     +  I + +YKT +   + +E I  
Sbjct: 1134 PFHIKIKSTEVYKDLPEEYENEFIAVQGIIDCFFEEEGEIILIDYKTDYVTEEMMEEIKE 1193

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             +  Q+ +Y K L+     K +    IY+
Sbjct: 1194 KYKVQIDLYAKALEKI-TGKRVKEKYIYL 1221


>gi|328552685|gb|AEB23177.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
            amyloliquefaciens TA208]
          Length = 1234

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/1039 (14%), Positives = 329/1039 (31%), Gaps = 141/1039 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQT----QCIEERFS 67
            E + +D     +     + K + L+   G P          LQQ  +        +  + 
Sbjct: 220  EYVREDAEMALFGAKQKLEKALELTKAPGGPAPRADNVLDDLQQIEELISCRHDFKALYE 279

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMF 120
             + +    +    + +   + +  ++ DL+   KK  ++        +          M 
Sbjct: 280  RVPAVTFKRAKAVKGDEFDKALLDEATDLRNGAKKLIEKLKTDYFTRSPQDHLKSLKDMK 339

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQ 175
                  + L       +E AK++  ++DF DL      +L  RD     V +        
Sbjct: 340  PVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTARDEEGRRVPSEAAVYYQD 399

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            + + +L+DE QDT+L+Q  +++ +       K+ +     LF VGD KQSIY F  AEP 
Sbjct: 400  QFHEVLVDEYQDTNLVQESILQLV-------KSGNEEAGNLFMVGDVKQSIYRFRLAEPL 452

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTT 293
              L + +   +    AG     I+L  +FRS +DIL   + +F      +   +  D   
Sbjct: 453  LFLGKYKRFTEDGEGAG---QKIDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQA 509

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             + S  D+      E +           +    A+ IA  I
Sbjct: 510  ALKLGASYPPNDAAKTELLLIDSADDADSPEDAEDF----------ETVHWEAKAIAAEI 559

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              ++ +     +GK    R IQ +DI++L+R                 +  I V  N   
Sbjct: 560  RKLVSSPFKVYDGKTKTHRNIQYRDIVILLRSM----PWAPQLMEELKNQGIPVYANLTS 615

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-- 468
               + + +   +++ + I +   D+    +L+SP+    E+++  I  ++ +        
Sbjct: 616  GYFEAVEVAAALSVLKVIDNPYQDIPLASVLRSPIVGCDENELALIRLEKKKAPFYEALK 675

Query: 469  ---YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNE 524
                     +    K +     + +    +   S  +    +               G +
Sbjct: 676  AYIANGDRHDDLYQKLRTFYDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQ 735

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHT 579
                L    +     E  ++  L   +  +E+           RA S   + VR+MT+H+
Sbjct: 736  RQANLRVLYDRARSYEATAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHS 795

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            +KGLE PVVF    G         K   +   L           +       +  + K +
Sbjct: 796  SKGLEFPVVFTAGLGRSFNMMDLNKSYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKM 855

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------------------RT 680
            ++    E  R+LYV +TRA ++L +        ++ +                      +
Sbjct: 856  RRELLSEELRVLYVALTRAKEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASS 915

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS------------THHPENTPLEREE 728
            + D +  +      ++  +    +  ++                      PE    E+ +
Sbjct: 916  YLDFIGPALIRHSDMEAHRAPGLLAPEDIAHDPARFHIRMLQQSELLEDSPEERAEEKSK 975

Query: 729  TIKQLMDEQKIPKKLF---------------------------------SPIKNDINEPY 755
             +K +   + IP                                        +++ +   
Sbjct: 976  RLKAIQHGEPIPDSFSFDDQARRLLEWEYPYRKLTAIRTKQSVSELKRKQEYEDEYSGRS 1035

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT--SYCTKNA 813
            ++ PS      K     +        +G  +H ++Q I        +          +  
Sbjct: 1036 LIKPSGDTLLYKRPGFMMKKGLTAAEKGTAMHTVMQHIPLTHVPTAEEAERTVRMLYEKE 1095

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINC---------PKKDII 863
             L   ++    +  + +     +    +       EV  S  +             + ++
Sbjct: 1096 LLTEEQQDAIDIDEVIQFFGTEIGKDLVGALRIDREVPFSMALPASEVYKDAETAGEPLL 1155

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYP 916
            + G ID +  +   +++ +YKT                 +   +  Q+ +Y K ++    
Sbjct: 1156 VQGIIDCLYETADGLYLLDYKTDRIEGKFRNGFEGAAPILQKRYETQIELYTKAVEQITK 1215

Query: 917  NKSLVCLLIYVSEPKVFII 935
                   L +     V  +
Sbjct: 1216 TNVKRRALYFFDGGHVLTL 1234


>gi|254853388|ref|ZP_05242736.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503]
 gi|300763922|ref|ZP_07073918.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N1-017]
 gi|258606756|gb|EEW19364.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503]
 gi|300515263|gb|EFK42314.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N1-017]
          Length = 1234

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/1025 (15%), Positives = 341/1025 (33%), Gaps = 133/1025 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   +  + E   P          L + + + + S      +   
Sbjct: 226  IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + S    +  T + K+   +E  +++   ++  KK           R+  N     +  
Sbjct: 285  AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K    ++ E K++  VLDF DL      +L K + ++ +     ++   
Sbjct: 345  KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T       N+      LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+    +G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             +S         +L    +   +S+   +         S  +     + +R IA  I  M
Sbjct: 515  GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566

Query: 357  IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + I +   D+    +L+SP+   +E+++ ++   +      + +  Y 
Sbjct: 623  ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +    K    I+ ++    ++   +       I       +       G +    L
Sbjct: 683  DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + K E + +  +    + 
Sbjct: 923  GNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  IPVKSPYKDEIQRYMNYEYQNEEATKIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
                    +       G  +H L+Q +    +  +++ +       +   +    + K +
Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101

Query: 825  -LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISI 873
             +  +    E+ +  T +        EV  S  +            + ++I G +D   I
Sbjct: 1102 NIKQVLGFFESQLGKTMLQKKDLVKREVPFSYLLPVSELYEKVDIDERVLIQGVVDS-MI 1160

Query: 874  SQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             ++ I + +YKT              + +   +  Q+ +Y K ++     K     L + 
Sbjct: 1161 EEETITLIDYKTDKIEGRYSNWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFF 1220

Query: 928  SEPKV 932
                +
Sbjct: 1221 DGQHI 1225


>gi|154685514|ref|YP_001420675.1| AddA [Bacillus amyloliquefaciens FZB42]
 gi|251764498|sp|A7Z368|ADDA_BACA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|154351365|gb|ABS73444.1| AddA [Bacillus amyloliquefaciens FZB42]
          Length = 1235

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 152/1037 (14%), Positives = 331/1037 (31%), Gaps = 141/1037 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQT----QCIEERFSLL 69
            + +D     +     + K + L+   G P          LQQ  +        +  +  +
Sbjct: 223  VKEDAEMALFGAKQKLEKALELTKAPGGPAPRADNFLDDLQQIEELISCRHDFDALYERV 282

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKS 122
             +    +    + +   + +  ++ DL+   KK  ++        +          M   
Sbjct: 283  PAVSFKRAKAVKGDEFDKALLDEATDLRNGAKKLIEKVKTDYFTRSPQDHLKSLADMKPV 342

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEI 177
                + L       +E AK++  ++DF DL      +L     + R V +        + 
Sbjct: 343  IETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAVDEEGRRVPSEAAVYYQDQF 402

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            + +L+DE QDT+L+Q  +++ +       K+ +     LF VGD KQSIY F  AEP   
Sbjct: 403  HEVLVDEYQDTNLVQESILQLV-------KSGNEEAGNLFMVGDVKQSIYRFRLAEPLLF 455

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295
            L + +   +    AG     I+L  +FRS +DIL   + +F      +   +  D    +
Sbjct: 456  LGKYKRFTESGAGAG---QKIDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQAAL 512

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            +  +S             + S   +  +   E +           +    A+ IA  I  
Sbjct: 513  KLGASYPPNDAAKTELLLIDSADGADSSEDAEDF----------ETVHWEAKAIAGEIRK 562

Query: 356  MIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            ++ +     +GK    R IQ +DI++L+R                 +  I V  N     
Sbjct: 563  LVSSPFKVYDGKTKTHRNIQYRDIVILLRSM----PWAPQLMEELKNQGIPVYANLTSGY 618

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467
             + + +   +++ + I +   D+    +L+SP+    E+++  I  ++ +         Y
Sbjct: 619  FEAVEVAAALSVLKVIDNPYQDIPLASVLRSPIVGCDENELALIRLEKKKAPFYEALKAY 678

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526
                   +    K +     + +    +   S  +    +               G +  
Sbjct: 679  LANADRHDELYQKLRTFYDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQRQ 738

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581
              L    +     E  ++  L   +  +E+           RA S   + VR+MT+H++K
Sbjct: 739  ANLRVLYDRARSYEATAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 798

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVVF    G         K   +   L           +       +  + K +++
Sbjct: 799  GLEFPVVFTAGLGRSFNMMDLNKSYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKMRR 858

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------------------RTWY 682
                E  R+LYV +TRA ++L +        ++ +                      ++ 
Sbjct: 859  ELLSEELRVLYVALTRAKEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASSYL 918

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS------------THHPENTPLEREETI 730
            D +  +      ++  +     + ++                     +P+    E+ + +
Sbjct: 919  DFIGPALIRHRDMEAHRTPGLSSSEDIARDPSRFHIRMLQQSELLEENPKERAEEKSKRL 978

Query: 731  KQLMDEQKIPKKLF---------------------------------SPIKNDINEPYIL 757
            K +   + IP                                        +++ +   ++
Sbjct: 979  KAIQQGEPIPDSFSFDDQARRLLEWEYPYRELTAIRTKQSVSELKRKQEYEDEYSGRSLI 1038

Query: 758  NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT--SYCTKNAKL 815
             PS      +     +        +G  +H ++Q I        +          +   L
Sbjct: 1039 KPSGDTLLYRRPGFMMKKGLTAAEKGTAMHTVMQHIPLTHVPTAEEAERTVRMLYEKELL 1098

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCP---------KKDIIIS 865
               ++    +  I +     +    +       EV  S  +             + +++ 
Sbjct: 1099 TEEQQEAIDIEEIVQFFGTEIGKDLLRALRIDREVPFSMALPAGEVYKDAETAGEPLLVQ 1158

Query: 866  GRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            G ID +  +   +++ +YKT                 +   +  Q+ +Y K ++     K
Sbjct: 1159 GIIDCLYETADGLYLLDYKTDRIEGKFRNGFEGAAPILQKRYETQIELYTKAVEQITKTK 1218

Query: 919  SLVCLLIYVSEPKVFII 935
                 L +     V  +
Sbjct: 1219 VKGRALYFFDGGHVLTL 1235


>gi|15895530|ref|NP_348879.1| ATP-dependent exoDNAse beta subunit [Clostridium acetobutylicum ATCC
            824]
 gi|81529946|sp|Q97GV3|ADDA_CLOAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|15025265|gb|AAK80219.1|AE007727_3 ATP-dependent exonuclease (exonuclease V) synthesis protein AddA
            (helicase and exonuclease domains) [Clostridium
            acetobutylicum ATCC 824]
          Length = 1252

 Score =  395 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 157/982 (15%), Positives = 320/982 (32%), Gaps = 123/982 (12%)

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            E+ +  L +          K+   +E  K   DL++ +KKS  +  +     N+ ++ + 
Sbjct: 284  EKLYEELKNVQFKTLKRCPKD-ADKEKQKLVRDLRDGVKKSLSKISEDILSQNSEEIKEE 342

Query: 123  TLASLTLAKYLNA-------HYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIR 170
                  L K L+         Y++ KKK  ++DF D       +L K D     V +   
Sbjct: 343  FKVLYPLMKTLSELVIEFDIRYKDKKKKRGIIDFNDFEHMCLSILTKSDESGNIVPSETA 402

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             KI ++   ILIDE QD++++Q  ++ +++          +    LF VGD KQSIY F 
Sbjct: 403  LKIREKYEEILIDEYQDSNMVQEVILSTISRK-------DTENPNLFMVGDVKQSIYRFR 455

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
             A P   L +    +    N  +K   + L  +FRS  ++L  V+ VF    +      D
Sbjct: 456  QANPGIFLEKYNSYK---ENKDEKNRKVLLYKNFRSRKEVLDSVNFVFKQIMSVNIGELD 512

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                 +       +     L       +  + +          +      +  + AR I 
Sbjct: 513  YDDNEKLNLGANYEEIEENLISHSAELNIIEKSEDNTEIKENNEDEESVDNIMLEARLIG 572

Query: 351  YTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
              I  +     +        R  + KDI++L+R  K    +         +  I V  + 
Sbjct: 573  RRIIELKENFKVLDKNTNVYRKAEFKDIVILLRSTKGWANV---FSDELKNMGIPVFADA 629

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETV 466
                 D   +K +++L + I +   D+    +LKSP+  FS +D+  I     +T  + +
Sbjct: 630  NSGYFDAPEVKTMLSLLQVIDNPRQDIPMAAVLKSPVGGFSVEDLIDIKVIEGDTFYDKL 689

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525
                    +    + +  +  ++     + +    +F   +           +   G + 
Sbjct: 690  KVAADIGDDEFSVRIRTFLNRLYRWRKESLYTPIDEFIWYLYTDTGYYGYVGAVSGGIQR 749

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTA 580
               L           + SY  L   I+      L        +    N N VRIM++H +
Sbjct: 750  QANLKMLFQRAKIYSETSYKGLFNFINFINKLKLTSGDMGSAKILGENENVVRIMSIHKS 809

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE P+VF+   G           +     L   P    +  +   +      +   ++
Sbjct: 810  KGLEFPIVFVGGLGKNFNLMDMNNPVLFHNYLGFGPEYVDYKKRISHKTLAKEAIKNRIR 869

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------------SNEKKSNQRTW 681
              T  E  R+LYV  TRA ++LI+    +                    S +     +++
Sbjct: 870  IETLSEEMRILYVAFTRAKEKLIMVGSVSDIKRSVFKWAVNLRSNQNKISEDYVLKSKSF 929

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM------- 734
             D +  +    +  + ++     +K+                L R + +           
Sbjct: 930  LDWIASAVIRHKDAENLRDIMDTSKENIDNLVCDPSSWRVNVLSRNDVLSFNQLLLEEEK 989

Query: 735  --------------------------DEQKIPKKLFSPIKNDINEPYILNPSTI------ 762
                                      +E K   +     +     P +L+ + +      
Sbjct: 990  NINEKLTQFYKRLKEIRSSNYESVYIEEIKSRLEFKYRYEKAAELPSLLSVTELKRNINE 1049

Query: 763  ------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF--ITSY 808
                            K      +       RG  +H ++Q +         +   I   
Sbjct: 1050 DNDEYATKIFTPSLVKKPLFLEEVKKMSPSERGTAVHSVMQHLDFSSISCDMSIKNIRHQ 1109

Query: 809  CTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKIN-------- 856
                   ++   K+ +++ +  I +  ++P+ +  + +   Y E     ++         
Sbjct: 1110 IDDMVFRRILTEKQAESVNINRILKFFQSPIGSRVIKAEKVYREFPFQIRVKSTEIYNDL 1169

Query: 857  ---CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                  ++II+ G +D        I + +YK  +   + +      +  Q++ Y++ L+ 
Sbjct: 1170 PKIYDDENIIVQGIVDLFFKENDEIVLLDYKNDYINDENLNETVKKYTYQINYYKRALEI 1229

Query: 914  SYPNKSLVCLLIYVSEPKVFII 935
                K     L          I
Sbjct: 1230 VTGLKVKEKYLYLFYTGDTIKI 1251


>gi|16804306|ref|NP_465791.1| hypothetical protein lmo2267 [Listeria monocytogenes EGD-e]
 gi|224500935|ref|ZP_03669242.1| hypothetical protein LmonFR_00190 [Listeria monocytogenes FSL R2-561]
 gi|81592702|sp|Q8Y511|ADDA_LISMO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|16411737|emb|CAD00345.1| lmo2267 [Listeria monocytogenes EGD-e]
          Length = 1235

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/1024 (15%), Positives = 343/1024 (33%), Gaps = 130/1024 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   ++ + E   P          L + Q L + + +       +
Sbjct: 226  IKEDIELRVNQAKNYLLNAINYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + +    +  T + K+   +   +++   ++  KK           R+  N     +  
Sbjct: 285  SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNCLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K  +A++ E K++  VLDF DL      +L   D ++ +     ++   
Sbjct: 345  KPDIQTLSELVKKFSANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T               LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+  +  G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             ++         +L    +   D++   +         S  +     + +R IA  I  M
Sbjct: 515  GANFPETNAMETELLLIDMKTEDTETEDEL--------SPQELQKNQVESRAIAMKIREM 566

Query: 357  IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIYDKKLKQNRPIQYRDIIILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + + +   D+    +L+SP+   +E+++ +I   + +    + +  Y 
Sbjct: 623  ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLTYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +   +K    ++ ++    ++   +       I       +       G +    L
Sbjct: 683  DITVSETANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + + E   +  +    + 
Sbjct: 923  GNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824
                    +       G  +H L+Q +    +  +++      T +   +    + K + 
Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDILTDVQIKAIN 1102

Query: 825  LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874
            +  I    E+P+  T +        EV  S  +            + ++I G +D +   
Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYEKVDLDERVLIQGVVDSMIEE 1162

Query: 875  QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            ++ I + +YKT              + +   +  Q+ +Y + ++     K     L +  
Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222

Query: 929  EPKV 932
               +
Sbjct: 1223 GQHI 1226


>gi|224499009|ref|ZP_03667358.1| hypothetical protein LmonF1_04628 [Listeria monocytogenes Finland
            1988]
 gi|254826845|ref|ZP_05231532.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165]
 gi|258599223|gb|EEW12548.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165]
          Length = 1235

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/1024 (15%), Positives = 342/1024 (33%), Gaps = 130/1024 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   ++ + E   P          L + Q L + + +       +
Sbjct: 226  IKEDIELRVNQAKNYLLNAINYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + +    +  T + K+   +   +++   ++  KK           R+  N     +  
Sbjct: 285  SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K   A++ E K++  VLDF DL      +L   D ++ +     ++   
Sbjct: 345  KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T               LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+  +  G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             ++         +L    +   D++   +         S  +     + +R IA  I  M
Sbjct: 515  GANFPETNAMETELLLIDMKTEDTETEDEL--------SPQELQKNQVESRAIAMKIREM 566

Query: 357  IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIYDKKLKQNRPIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + + +   D+    +L+SP+   +E+++ +I   + +    + +  Y 
Sbjct: 623  ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLTYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +   +K    ++ ++    ++   +       I       +       G +    L
Sbjct: 683  DITVSETANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + + E   +  +    + 
Sbjct: 923  GNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824
                    +       G  +H L+Q +    +  +++      T +   +    + K + 
Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDILTDVQIKAIN 1102

Query: 825  LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874
            +  I    E+P+  T +        EV  S  +            + ++I G +D +   
Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYEKVDLDERVLIQGVVDSMIEE 1162

Query: 875  QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            ++ I + +YKT              + +   +  Q+ +Y + ++     K     L +  
Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222

Query: 929  EPKV 932
               +
Sbjct: 1223 GQHI 1226


>gi|254520364|ref|ZP_05132420.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA]
 gi|226914113|gb|EEH99314.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA]
          Length = 1251

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/975 (16%), Positives = 317/975 (32%), Gaps = 127/975 (13%)

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
             FS L S    +    +   I + I         KL +                 +    
Sbjct: 281  SFSRLKSVKKDKVSDEESLEIVKSIRDSIKKKTSKLIEDSFSMTVNDALNGIKNSYPYMK 340

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINH 179
                L       ++E K++  +LDF DL      +L     +     + +     +  + 
Sbjct: 341  MISQLTLEFINRFKEKKRERNILDFNDLEHLCLKILIENDEEDNICPSSVANGFREYFDE 400

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +L+DE QD++ +Q  +I  ++               +F VGD KQSIY F  A+P+  L 
Sbjct: 401  VLVDEYQDSNNVQEAIIDLVSRKTLE-------NPNVFMVGDVKQSIYRFRQAKPELFLD 453

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN--AQGLSEDSTTTIRH 297
            +           G     I+L  +FRS  ++++ V+ +F    +     L  +    +  
Sbjct: 454  KYNRYP---LEDGDLNRKIQLYKNFRSREEVISGVNYIFKEVMSKTVGELEYNDDEALNL 510

Query: 298  RSSRIGQ-------VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
             ++            G ++L     S   +    + +      +      S  + AR +A
Sbjct: 511  GANYKENNDENTMIAGPIELHILDKSGEYTTEVEEYDGEGL-VEEEEDIDSIGLEARIVA 569

Query: 351  YTISNMIGTDT---------IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
              I  ++  D              G+ R ++ KDI++L+R    T   + +         
Sbjct: 570  RRIKELLNPDPKTGKVFKVLDKETGEYRPLKYKDIVILLRA---TRNWSEIFLEEIGSEG 626

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            I V  +      + + I+ +M+L + I +   D+  + +L+SPL +FS +++  I     
Sbjct: 627  IPVYADTGTGYFETIEIRTMMSLLKVIDNPMQDVPMISVLRSPLVSFSAEELGDIRLLDK 686

Query: 462  ETETVY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            E           + + +      +K +  I  + +  + + +    +F   +        
Sbjct: 687  EKYFYEIIKGVSDDVYEVNEELKNKCKIFINNLGKWRNKSIYTPIDEFIWYLYMDTAYYG 746

Query: 516  QF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANH 569
                   G      L        + EQ S+  L   I+ +             +    N 
Sbjct: 747  YVGAMPNGKLRQANLKILFQRAKQFEQTSFKGLFNFINFINKLRNSSGDMGSAKILGENE 806

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            + VRIM++H +KGLE PVVF    G Q       K +     L   P       ++    
Sbjct: 807  DVVRIMSIHKSKGLEFPVVFTCGFGKQFNLMDLNKSILYHDDLGLGPDYVDLERRNSYST 866

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ----------- 678
                 + K +   T  E  R+LYV  TRA ++LII   +    +  S             
Sbjct: 867  LAKEAIKKKILFETLSEEMRILYVAFTRAKEKLIITGATRNLEKSISRWVSSAALDDEIV 926

Query: 679  --------RTWYDMVYDSFHNDERVKKIK------------LTNSINKDEWIAYEWSTHH 718
                    +++ D +  +       ++++              ++     W     +   
Sbjct: 927  PASEVLKGKSYLDWIGMAICKHRDGEELRKYIGANNSSIINDFSTWRTQMWTKNLLAVEK 986

Query: 719  PENTPLEREET-------IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------- 762
             E    E EET       +  +  E +               P  ++ S +         
Sbjct: 987  NEVAVDENEETDLFINSDVDHIDKEIERRLNYKYKYDLAGKLPSNVSVSDLKRSLYNNEN 1046

Query: 763  -----------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT- 810
                           K              RG I H ++Q +     + ++   T   + 
Sbjct: 1047 DDVITVNIFSDKEVLKPKFLQEKRGLSASERGTIAHFIMQKLDLNKVNTKEEIDTQIYSM 1106

Query: 811  KNAKLWPAKEYKNLLL-SITRLLENPMMTTAMSCD-----SYSEVSVSGKIN-------- 856
            K+  L   +E K +   S     ++ +    ++          E+    +I+        
Sbjct: 1107 KDKNLLTEEEIKAVQKISFISFFKSNLGKRLLNAFNTGKLVKRELPFYTEISSLNIDSTL 1166

Query: 857  ----CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                   +++ + G ID I   +  I + +YKT +    +   I   +  Q+  Y+  ++
Sbjct: 1167 SEEVYGNENVRLQGIIDCIFEEEDKIILLDYKTDYVEHGKESEILDKYKIQIKYYKDAVE 1226

Query: 913  DSYPNKSLVCLLIYV 927
                 K +    +Y+
Sbjct: 1227 KI-TGKEVKECYLYL 1240


>gi|296132525|ref|YP_003639772.1| recombination helicase AddA [Thermincola sp. JR]
 gi|296031103|gb|ADG81871.1| recombination helicase AddA [Thermincola potens JR]
          Length = 1279

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 147/1074 (13%), Positives = 325/1074 (30%), Gaps = 166/1074 (15%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTI--LKKAQTLQQASQTQCIEERFSLLSSFF 73
            + +         +  + +   L++  G P          +            +  L    
Sbjct: 217  LLQWAELQLSGCLVKLKEAEKLALRPGGPAAYLDNLRDDMVVVHDLLAAARSWDGLHRAL 276

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-----------TYKMFKS 122
               +F   K    ++I++   +  +KL++   + I    R               +    
Sbjct: 277  QDLQFGKLKACRNKDIDETLKERTKKLREEAKKTIASLSRDLFARPLGEHVADLERTAPY 336

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR------DVSAWIRYKIDQE 176
                  L +     Y E K    ++DF DL      +L          + + +  ++ + 
Sbjct: 337  VRTVAGLVRAFMERYREMKTARGLVDFSDLEHYCLKVLLDEKSTPQKPMPSPVALELREY 396

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               +L+DE QD + +Q  ++  ++      +   +    LF VGD KQSIY F  AEP  
Sbjct: 397  FAEVLVDEYQDINAVQETILHLVSR-----QGEDAERPNLFMVGDVKQSIYRFRLAEPSL 451

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTT 294
             + +     + A   G+    ++L  +FRS  +++  V+ +F      +   L  D+   
Sbjct: 452  FMSKYLAYPRTA---GEACRAVDLTQNFRSRREVIDAVNYIFRQIMTPRLGELIYDNKAE 508

Query: 295  IRHRSSRIG-------QVGTVQLW----------EQVVSQHDSQCNPQQESWTSYFDSLP 337
            +   +             G V+L                          +  ++  D   
Sbjct: 509  LHCGALYADVPGGGPPAGGPVELHLLEKKVDIGAPGGEENEQPDAIDAGDDASNSDDDPA 568

Query: 338  QESSASILARRIAYTISNMIG----------TDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
            +  +    AR +A  I  ++                + G    ++ +DI++L+R  +   
Sbjct: 569  ELDATQREARLVARRIKELVSGTAERPGPQLQVFDKTTGGYHPVRYRDIVILMRATRGAA 628

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
             I            I V  +          I+ +M+L + I +   D+    +L+SP+  
Sbjct: 629  NI---FVEELRGAGIPVYADLDTGYFAATEIEIVMSLLKIIDNPRQDIPLAAVLRSPIVG 685

Query: 448  FSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
             + +++  +        + +                  ++ Q  +  + +   +A+  S 
Sbjct: 686  LTAEELALVRLCAPSRNSRFYDAVQAAAADGPVPEPVKTRLQAFLTSLEQWRTMARQGSL 745

Query: 501  HDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--- 556
                  +               G +    L    +   + E  +Y  L   +  +E+   
Sbjct: 746  AGLVWRLYNETGYYTYVGGMPGGMQRQANLRALYDRARQYEATAYRGLFRFLRFIERFQD 805

Query: 557  --YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                    RA   N + VRIM++H +KGLE PVV +   G Q  +    + + +   L  
Sbjct: 806  LGNDLGTARALGENEDVVRIMSIHKSKGLEFPVVIVAGLGKQFNTVDLRQNVVLHKELGI 865

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------- 667
               +          + + S + K  +     E  R+LYV +TRA ++LI+          
Sbjct: 866  GLPVVEPELPLTYPSLVQSAIRKKNQMEMLAEEMRVLYVALTRAREKLILIGSAAELEKC 925

Query: 668  ------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK-------LTNSINKDE 708
                            +   +  +++ D +  +       + I+              ++
Sbjct: 926  AAQWCQNVLHKEWPLPDVSLAGAKSFLDWICPAVARHREGQAIRDLAGCDEAPAGEPAED 985

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK-------------------LFSPIKN 749
               +      P    + + E      +  +  +K                      P   
Sbjct: 986  RSLWSVRVWRPGECLVPQPEEPADYEELLEKVRKMEPVDITAGQTKVISEALSWKYPFAL 1045

Query: 750  DINEPYILNPSTIDTKG--------------------------KTNLESLLSDNQTFNRG 783
               +P     + I                              +              RG
Sbjct: 1046 TAGKPSKAAVTEIKNSFAGMEMEETHGSHPAGELAVLRKFNFIRPRFYQNQKGLTAAERG 1105

Query: 784  LIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM 841
              +H ++Q +       ++         +  +L  A++ K +    I     + +    +
Sbjct: 1106 SAVHLVMQHVDLRGDLTEQGIAGQLARMQARELLTAEQAKAINPKDIAGFFNSEIGRRML 1165

Query: 842  SCDS-YSEVSVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHV- 889
              D  Y E+  +  +              + +++ G ID +        + +YKT     
Sbjct: 1166 RADEIYRELPFTVTLPAEVIYSDLPAGCGEAVLVQGVIDCLLKEGDGFVLLDYKTDRLPV 1225

Query: 890  -------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV-SEPKVFII 935
                      ++ +   +  QL+IY   ++     K +    IY+ +  K   I
Sbjct: 1226 EKNSLPAGDVLQVLADKYRGQLNIYAMAVERILR-KPVQAKYIYLFAVGKTVEI 1278


>gi|331268546|ref|YP_004395038.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925]
 gi|329125096|gb|AEB75041.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925]
          Length = 1244

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/999 (16%), Positives = 316/999 (31%), Gaps = 124/999 (12%)

Query: 42   GNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK 101
                 L     L   S        +  LS     +  T +     ++  +K  D++ K+K
Sbjct: 264  DFENELAMIDDLI-LSAKSSWNSLYDELSKIKFGRLKTCRGCE-DKKTQEKVKDIRNKVK 321

Query: 102  -KSQDEFIKIRDRFN-------TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
             + QD+  K    +N          ++    +   L       Y  AKK+  ++DF D  
Sbjct: 322  KQLQDDIKKKVISYNGDEIVSDLMNLYPIMKSLTDLVLKFMNRYANAKKERGIIDFNDFE 381

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
                ++L   +    +  K+ Q    IL+DE QD++ +Q  +I S+              
Sbjct: 382  HFCLEILGHEE----VSLKLKQRYVEILVDEYQDSNYVQEAIINSIARQDEET----GKY 433

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIY F  A+P+      R           K   + L  +FRS  ++L  
Sbjct: 434  NNVFMVGDVKQSIYRFRQAKPEL---FLRKYNSYLEEDNAKERKVNLFKNFRSRKEVLDG 490

Query: 274  VDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
            V+ +F     EN   L  D    +   +          L    +  +  +          
Sbjct: 491  VNFIFKQIMSENIGELEYDDNEALNLGADFEEDNEDKYLVGGAIELNLMEKTKGDIEGQE 550

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRK 384
              D +       I  R +A  I+ ++  +               R ++ +DI++L+R   
Sbjct: 551  EDDEILSNI--QIEVRLVAKRINELVNPEMGEPFKVYDNDLKGYRNVEYRDIVILLRSTS 608

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                   +      +  I    +      + + IK +++L   I +   D+  + +L+SP
Sbjct: 609  ---RWAPVFMDELKEKLIPAYADVGNGYFESVEIKTILSLLEIIDNPRQDIPLIAVLRSP 665

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH-------VIKYIHELIHIAQF 497
            + +F+ +++  I  +  + +  Y+ I K       K           +K ++     +  
Sbjct: 666  IASFTPEELIDIRLENKDGD-FYQGILKILKSEDEKLDSLKKKCNIFLKKLNFWREKSIH 724

Query: 498  CSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-- 554
                +F   +           +   G +    L        + E+ SY  L   I+ +  
Sbjct: 725  IPIDEFIWYLYMDTGYYGYVGALSGGMQRQANLKILFQRARQYEKTSYKGLFNFINFINR 784

Query: 555  ---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                       +    N N VRIM++H +KGLE PVV L   G         +++     
Sbjct: 785  LKVSSGDMGSAKILGENDNVVRIMSIHKSKGLEFPVVILSALGKNFNMQDLNRRILYHDE 844

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            L   P       +      + + L K +K  +  E  R+LYV +TRA ++LI+    ++ 
Sbjct: 845  LGFGPDYIDLEKRISYETVLKAALKKKIKLESLSEEMRILYVALTRAKEKLIMTGAVSSI 904

Query: 672  NEKKSNQRT-------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
             +                          + D +       +  + ++    I   E +  
Sbjct: 905  EKSSKQWAYSLQGDNYKLSQYQVLTGKNYLDWICPVIMRHKDGEILREFAGIESFEKVNL 964

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKK----------------------LFSPIKND 750
                   +       E +     E  I                            P    
Sbjct: 965  IEDESKWKIKVNNVSEILHNNHKEDIILDDIEEIENIEETSSFYDEINSRLNFKYPYIES 1024

Query: 751  INEPYILNPSTI-------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
               P +L  + +                       K +           ++G  +H ++Q
Sbjct: 1025 SKLPTLLTVTELKRMKNASMYEDYAKDMYTPKLVKKPSFMEKDKKLTGADKGTAMHAVMQ 1084

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLW-PAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSE 848
             +    E   +           K +   ++ +++    I       +    + + +   E
Sbjct: 1085 KLDYKKELNIEEVKVQMENMVKKEFVTKEQIESVDPSKILNFFNTSIGKRFLKAKEVERE 1144

Query: 849  VSVSGKIN------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            V    ++                + I+I G ID     +  I + +YK+ +    E + I
Sbjct: 1145 VPFHIQLKSTEIFEGLSKDIYSDEHIMIQGIIDCYFEEEDGIVLVDYKSDYFKDGEEQSI 1204

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
               + AQ+  Y + +++    K     L      K   I
Sbjct: 1205 IKKYKAQIEYYARAIEELTNKKVKEKYLYLFYVDKEVEI 1243


>gi|289435607|ref|YP_003465479.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
 gi|289171851|emb|CBH28397.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
          Length = 1236

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 148/950 (15%), Positives = 302/950 (31%), Gaps = 111/950 (11%)

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
                    +  +    ++K  L        ++    +  KM         L K     + 
Sbjct: 305  EEYVEEAKKFRDAAKKEIKNVLIDWFSR-NEVNYLADLEKMKPDIKTLSNLVKKFAEDFF 363

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            E K+K  VLDF DL     ++L K      +     ++   +LIDE QDT+++Q  ++  
Sbjct: 364  EEKQKRGVLDFNDLEHLALNILLKEGAPTDVAKSYQKQFKEVLIDEYQDTNMVQETILTL 423

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +T        T+ +   LF VGD KQSIY F  AEP   + + +  ++  TN G     I
Sbjct: 424  VTR-------TNETSGNLFMVGDVKQSIYRFRLAEPTLFMAKYQQYRQDGTNGGI---RI 473

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            +L  +FRS  ++L   + +F    + Q   +  D    +   +              +  
Sbjct: 474  DLSRNFRSRKEVLDATNFIFRQLMDKQVAEIDYDDAAELTLGARFPESQNMSTELLLI-- 531

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQA 373
                    ++   T    S  +     + AR IA  I  M+       + K    R IQ 
Sbjct: 532  ----DMKTEEIEATDDELSPQELQKNQVEARAIAMKIRAMVDNKFPIYDKKMQQNRPIQY 587

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +DI++L R     P I    + L     I    N+     +   +  ++AL + I +   
Sbjct: 588  RDIVILSRAMTSAPDIEEAMKIL----DIPFYANNNSGYFETTEVATMIALMKVIDNPYQ 643

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHE 490
            D+    +L+SP+    E+++ +I   + +    + +  +     +    K    IK ++ 
Sbjct: 644  DIPLAAVLRSPIIGLKEEELGQIRMAKKKGYFFDAMLAFKDSVNSEAADKISEFIKQLNN 703

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
               ++   +       I       +       G +    L    +   + E+ S+  L  
Sbjct: 704  WRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFR 763

Query: 550  LISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             +  +E+           +      + VR+MT+H +KGLE PVV +     +        
Sbjct: 764  FVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVAGLSRKFNMRDIYS 823

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            K  +                      +   + +   +    E  R+LYV +TRA ++LI+
Sbjct: 824  KSLLDKDYGFASAYRDIEKMIVYPTIMQQAIKQKKTREMIAEEMRVLYVALTRAEEKLIL 883

Query: 665  CKHSNTSNEK-------------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
                    +                    ++  + + D +  +       K++     I 
Sbjct: 884  VGTVPNFEKTSKNWLQVAKGKETILPAAVRAKAKCYLDWIGYTLIRHTSFKELLCEELIQ 943

Query: 706  KDEWIAYEWST-----------------HHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                         +        +    Q   + +I + +    K
Sbjct: 944  TLPTDMMLQIEIKTKEMFLSSEKEGVKQDNWMENIKAHQPVPVQSAYKDEIKRFMNYRYK 1003

Query: 749  NDINEPYILNPSTIDTKG----------------------KTNLESLLSDNQTFNRGLII 786
            ++ +       S  + K                               +       G  +
Sbjct: 1004 DEASTKIRAKQSVTELKRQFTLQDSWSDTTLLKEFQKVSLDRPKFLQKNKLSATEVGTAM 1063

Query: 787  HKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-- 842
            H L+Q +     P  +    +     +   L  A+     +  I    E+ +    +S  
Sbjct: 1064 HTLMQAVPLENKPSEEDVKQLLQTMIEKDILTDAQVKAINIDQIIGFFESELGQNVLSEK 1123

Query: 843  CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHHHV----- 889
             +   EV  S  +            + ++I G +D +   + +I + +YKT         
Sbjct: 1124 ENVKREVPFSYLLPVEKLDKQANLDEHVLIQGVVDSMIEQEDSIILIDYKTDKIAGRYSS 1183

Query: 890  -PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                 + +   +  Q+ +Y + ++     +     L +     +  I   
Sbjct: 1184 WEAAEKIMKERYQVQIKLYAEAIEAISGKRVSQAYLYFFDGQHICQINTE 1233


>gi|284802713|ref|YP_003414578.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578]
 gi|284995855|ref|YP_003417623.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923]
 gi|284058275|gb|ADB69216.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578]
 gi|284061322|gb|ADB72261.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923]
          Length = 1235

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/1024 (15%), Positives = 342/1024 (33%), Gaps = 130/1024 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   ++ + E   P          L + Q L + + +       +
Sbjct: 226  IKEDIELRVNQAKNYLLNAINYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + +    +  T + K+   +   +++   ++  KK           R+  N     +  
Sbjct: 285  SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K   A++ E K++  VLDF DL      +L   D ++ +     ++   
Sbjct: 345  KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T               LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+  +  G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             ++         +L    +   D++   +         S  +     + +R IA  I  M
Sbjct: 515  GANFPETNAMETELLLIDMKTEDTETEDEL--------SPQELQKNQVESRAIAMKIREM 566

Query: 357  IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIYDKKLKQNRPIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + + +   D+    +L+SP+   +E+++ +I   + +    + +  Y 
Sbjct: 623  ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLTYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +   +K    ++ ++    ++   +       I       +       G +    L
Sbjct: 683  DITVSETANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMWDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + + E   +  +    + 
Sbjct: 923  GNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824
                    +       G  +H L+Q +    +  +++      T +   +    + K + 
Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDILTDVQIKAIN 1102

Query: 825  LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874
            +  I    E+P+  T +        EV  S  +            + ++I G +D +   
Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYEKVDLDERVLIQGVVDSMIEE 1162

Query: 875  QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            ++ I + +YKT              + +   +  Q+ +Y + ++     K     L +  
Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222

Query: 929  EPKV 932
               +
Sbjct: 1223 GQHI 1226


>gi|325509678|gb|ADZ21314.1| ATP-dependent exonuclease (exonuclease V) synthesis protein AddA
            (helicase and exonuclease domains) [Clostridium
            acetobutylicum EA 2018]
          Length = 1250

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 157/982 (15%), Positives = 320/982 (32%), Gaps = 123/982 (12%)

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            E+ +  L +          K+   +E  K   DL++ +KKS  +  +     N+ ++ + 
Sbjct: 282  EKLYEELKNVQFKTLKRCPKD-ADKEKQKLVRDLRDGVKKSLSKISEDILSQNSEEIKEE 340

Query: 123  TLASLTLAKYLNA-------HYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIR 170
                  L K L+         Y++ KKK  ++DF D       +L K D     V +   
Sbjct: 341  FKVLYPLMKTLSELVIEFDIRYKDKKKKRGIIDFNDFEHMCLSILTKSDESGNIVPSETA 400

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             KI ++   ILIDE QD++++Q  ++ +++          +    LF VGD KQSIY F 
Sbjct: 401  LKIREKYEEILIDEYQDSNMVQEVILSTISRK-------DTENPNLFMVGDVKQSIYRFR 453

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
             A P   L +    +    N  +K   + L  +FRS  ++L  V+ VF    +      D
Sbjct: 454  QANPGIFLEKYNSYK---ENKDEKNRKVLLYKNFRSRKEVLDSVNFVFKQIMSVNIGELD 510

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                 +       +     L       +  + +          +      +  + AR I 
Sbjct: 511  YDDNEKLNLGANYEEIEENLISHSAELNIIEKSEDNTEIKENNEDEESVDNIMLEARLIG 570

Query: 351  YTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
              I  +     +        R  + KDI++L+R  K    +         +  I V  + 
Sbjct: 571  RRIIELKENFKVLDKNTNVYRKAEFKDIVILLRSTKGWANV---FSDELKNMGIPVFADA 627

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETV 466
                 D   +K +++L + I +   D+    +LKSP+  FS +D+  I     +T  + +
Sbjct: 628  NSGYFDAPEVKTMLSLLQVIDNPRQDIPMAAVLKSPVGGFSVEDLIDIKVIEGDTFYDKL 687

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525
                    +    + +  +  ++     + +    +F   +           +   G + 
Sbjct: 688  KVAADIGDDEFSVRIRTFLNRLYRWRKESLYTPIDEFIWYLYTDTGYYGYVGAVSGGIQR 747

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTA 580
               L           + SY  L   I+      L        +    N N VRIM++H +
Sbjct: 748  QANLKMLFQRAKIYSETSYKGLFNFINFINKLKLTSGDMGSAKILGENENVVRIMSIHKS 807

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE P+VF+   G           +     L   P    +  +   +      +   ++
Sbjct: 808  KGLEFPIVFVGGLGKNFNLMDMNNPVLFHNYLGFGPEYVDYKKRISHKTLAKEAIKNRIR 867

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------------SNEKKSNQRTW 681
              T  E  R+LYV  TRA ++LI+    +                    S +     +++
Sbjct: 868  IETLSEEMRILYVAFTRAKEKLIMVGSVSDIKRSVFKWAVNLRSNQNKISEDYVLKSKSF 927

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM------- 734
             D +  +    +  + ++     +K+                L R + +           
Sbjct: 928  LDWIASAVIRHKDAENLRDIMDTSKENIDNLVCDPSSWRVNVLSRNDVLSFNQLLLEEEK 987

Query: 735  --------------------------DEQKIPKKLFSPIKNDINEPYILNPSTI------ 762
                                      +E K   +     +     P +L+ + +      
Sbjct: 988  NINEKLTQFYKRLKEIRSSNYESVYIEEIKSRLEFKYRYEKAAELPSLLSVTELKRNINE 1047

Query: 763  ------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF--ITSY 808
                            K      +       RG  +H ++Q +         +   I   
Sbjct: 1048 DNDEYATKIFTPSLVKKPLFLEEVKKMSPSERGTAVHSVMQHLDFSSISCDMSIKNIRHQ 1107

Query: 809  CTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKIN-------- 856
                   ++   K+ +++ +  I +  ++P+ +  + +   Y E     ++         
Sbjct: 1108 IDDMVFRRILTEKQAESVNINRILKFFQSPIGSRVIKAEKVYREFPFQIRVKSTEIYNDL 1167

Query: 857  ---CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                  ++II+ G +D        I + +YK  +   + +      +  Q++ Y++ L+ 
Sbjct: 1168 PKIYDDENIIVQGIVDLFFKENDEIVLLDYKNDYINDENLNETVKKYTYQINYYKRALEI 1227

Query: 914  SYPNKSLVCLLIYVSEPKVFII 935
                K     L          I
Sbjct: 1228 VTGLKVKEKYLYLFYTGDTIKI 1249


>gi|254831297|ref|ZP_05235952.1| hypothetical protein Lmon1_08062 [Listeria monocytogenes 10403S]
          Length = 1235

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/1024 (15%), Positives = 341/1024 (33%), Gaps = 130/1024 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   ++ + E   P          L + Q L + + +       +
Sbjct: 226  IKEDIELRVNQAKNYLLNAINYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + +    +  T + K+   +   +++   ++  KK           R+  N     +  
Sbjct: 285  SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K   A++ E K++  VLDF DL      +L   D  + +     ++   
Sbjct: 345  KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKGSEVAQNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T               LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+  +  G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             ++         +L    +   D++   +         S  +     + +R IA  I  M
Sbjct: 515  GANFPETNAMETELLLIDMKTEDTETEDEL--------SPQELQKNQVESRAIAMKIREM 566

Query: 357  IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIYDKKLKQNRPIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + + +   D+    +L+SP+   +E+++ +I   + +    + +  Y 
Sbjct: 623  ETTEVATMIALMKVVDNPYQDIPLAAILRSPIIGLNEEELGQIRMAKKKGYFYDALLTYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +   +K    ++ ++    ++   +       I       +       G +    L
Sbjct: 683  DITVSETANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + + E   +  +    + 
Sbjct: 923  GNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824
                    +       G  +H L+Q +    +  +++      T +   +    + K + 
Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDILTDVQIKAIN 1102

Query: 825  LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874
            +  I    E+P+  T +        EV  S  +            + ++I G +D +   
Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYEKVDLDERVLIQGVVDSMIEE 1162

Query: 875  QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            ++ I + +YKT              + +   +  Q+ +Y + ++     K     L +  
Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222

Query: 929  EPKV 932
               +
Sbjct: 1223 GQHI 1226


>gi|328911095|gb|AEB62691.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
            amyloliquefaciens LL3]
          Length = 1234

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/1039 (14%), Positives = 329/1039 (31%), Gaps = 141/1039 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQT----QCIEERFS 67
            E + +D     +     + K + L+   G P          LQQ  +        +  + 
Sbjct: 220  EYVREDAEMALFGAKQKLEKALELTKAPGGPAPRADNILDDLQQIEELISCRHDFKALYE 279

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMF 120
             + +    +    + +   + +  ++ DL+   KK  ++        +          M 
Sbjct: 280  RVPAVTFKRAKAVKGDEFDKVLLDEATDLRNGAKKLIEKLKTDYFTRSPQDHLKSLKDMK 339

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQ 175
                  + L       +E AK++  ++DF DL      +L  RD     V +        
Sbjct: 340  PVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTARDEEGRRVPSEAAVYYQD 399

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            + + +L+DE QDT+L+Q  +++ +       K+ +     LF VGD KQSIY F  AEP 
Sbjct: 400  QFHEVLVDEYQDTNLVQESILQLV-------KSGNEESGNLFMVGDVKQSIYRFRLAEPL 452

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTT 293
              L + +   +    AG     I+L  +FRS +DIL   + +F      +   +  D   
Sbjct: 453  LFLGKYKRFTEDGEGAG---QKIDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQA 509

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             + S  D+      E +           +    A+ IA  I
Sbjct: 510  ALKLGASYPPNDAAKTELLLIDSADDADSPEDAEDF----------ETVHWEAKAIAAEI 559

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              ++ +     +GK    R IQ +DI++L+R                 +  I V  N   
Sbjct: 560  RKLVSSPFKVYDGKTKTHRNIQYRDIVILLRSM----PWAPQLMEELKNQGIPVYANLTS 615

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-- 468
               + + +   +++ + I +   D+    +L+SP+    E+++  I  ++ +        
Sbjct: 616  GYFEAVEVAAALSVLKVIDNPYQDIPLASVLRSPIVGCDENELALIRLEKKKAPFYEALK 675

Query: 469  ---YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNE 524
                     +    K +     + +    +   S  +    +               G +
Sbjct: 676  AYIANGDRHDDLYQKLRIFYDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQ 735

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHT 579
                L    +     E  ++  L   +  +E+           RA S   + VR+MT+H+
Sbjct: 736  RQANLRVLYDRARSYEATAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHS 795

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            +KGLE PVVF    G         K   +   L           +       +  + K +
Sbjct: 796  SKGLEFPVVFTAGLGRSFNMMDLNKSYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKM 855

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------------------RT 680
            ++    E  R+LYV +TRA ++L +        ++ +                      +
Sbjct: 856  RRELLSEELRVLYVALTRAKEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASS 915

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS------------THHPENTPLEREE 728
            + D +  +      ++  +    +  ++                      PE    E+ +
Sbjct: 916  YLDFIGPALIRHSDMEAHRAPGLLAPEDIAHDPARFHIRMLQQSELLEDSPEERAEEKSK 975

Query: 729  TIKQLMDEQKIPKKLF---------------------------------SPIKNDINEPY 755
             +K +   + IP                                        +++ +   
Sbjct: 976  RLKAIQHGEPIPDSFSFDDQARRLLEWEYPYRKLTAIRTKQSVSELKRKQEYEDEYSGRS 1035

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT--SYCTKNA 813
            ++ PS      K     +        +G  +H ++Q I        +          +  
Sbjct: 1036 LIKPSGDTLLYKRPGFMMKKGLTAAEKGTAMHTVMQHIPLTHVPTAEEAERTVRMLYEKE 1095

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINC---------PKKDII 863
             L   ++    +  + +     +    +       EV  S  +             + ++
Sbjct: 1096 LLTEEQQDAIDIDEVIQFFGTEIGKDLVGALRIDREVPFSMALPASEVYKDAETAGEPLL 1155

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYP 916
            + G ID +  +   +++ +YKT                 +   +  Q+ +Y K ++    
Sbjct: 1156 VQGIIDCLYETADGLYLLDYKTDRIEGKFRNGFEGAAPILQKRYETQIELYTKAVEQITK 1215

Query: 917  NKSLVCLLIYVSEPKVFII 935
                   L +     V  +
Sbjct: 1216 TNVKRRALYFFDGGHVLTL 1234


>gi|308173040|ref|YP_003919745.1| ATP-dependent deoxyribonuclease subunit A [Bacillus amyloliquefaciens
            DSM 7]
 gi|307605904|emb|CBI42275.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus
            amyloliquefaciens DSM 7]
          Length = 1235

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/1039 (14%), Positives = 329/1039 (31%), Gaps = 141/1039 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQT----QCIEERFS 67
            E + +D     +     + K + L+   G P          LQQ  +        +  + 
Sbjct: 221  EYVREDAEMALFGAKQKLEKALELTKAPGGPAPRADNILDDLQQIEELISCRHDFKALYE 280

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMF 120
             + +    +    + +   + +  ++ DL+   KK  ++        +          M 
Sbjct: 281  RVPAVTFKRAKAVKGDEFDKVLLDEATDLRNGAKKLIEKLKTDYFTRSPQDHLKSLKDMK 340

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQ 175
                  + L       +E AK++  ++DF DL      +L  RD     V +        
Sbjct: 341  PVIETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTARDEEGRRVPSEAAVYYQD 400

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            + + +L+DE QDT+L+Q  +++ +       K+ +     LF VGD KQSIY F  AEP 
Sbjct: 401  QFHEVLVDEYQDTNLVQESILQLV-------KSGNEESGNLFMVGDVKQSIYRFRLAEPL 453

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTT 293
              L + +   +    AG     I+L  +FRS +DIL   + +F      +   +  D   
Sbjct: 454  LFLGKYKRFTEDGEGAG---QKIDLNQNFRSRSDILDSTNFLFKQLMGGKIGEVDYDEQA 510

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             ++  +S             + S  D+      E +           +    A+ IA  I
Sbjct: 511  ALKLGASYPPNDAAKTELLLIDSADDADSPEDAEDF----------ETVHWEAKAIAAEI 560

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              ++ +     +GK    R IQ +DI++L+R                 +  I V  N   
Sbjct: 561  RKLVSSPFKVYDGKTKTHRNIQYRDIVILLRSM----PWAPQLMEELKNQGIPVYANLTS 616

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-- 468
               + + +   +++ + I +   D+    +L+SP+    E+++  I  ++ +        
Sbjct: 617  GYFEAVEVAAALSVLKVIDNPYQDIPLASVLRSPIVGCDENELALIRLEKKKAPFYEALK 676

Query: 469  ---YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNE 524
                     +    K +     + +    +   S  +    +               G +
Sbjct: 677  AYIANGDRHDDLYQKLRIFYDSLQKWRSFSTNHSVSELIWEVYRDTGYFDYAGGMPGGKQ 736

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHT 579
                L    +     E  ++  L   +  +E+           RA S   + VR+MT+H+
Sbjct: 737  RQANLRVLYDRARSYEATAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHS 796

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            +KGLE PVVF    G         K   +   L           +       +  + K +
Sbjct: 797  SKGLEFPVVFTAGLGRSFNMMDLNKPYLLDKELGFGTKYIHPELRISYPTLPLVAMKKKM 856

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------------------RT 680
            ++    E  R+LYV +TRA ++L +        ++ +                      +
Sbjct: 857  RRELLSEELRVLYVALTRAKEKLFLVGSCKNREKQLAKWQAQADRADWLLSEFDRYQASS 916

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS------------THHPENTPLEREE 728
            + D +  +      ++  +    +  ++                      PE    E+ +
Sbjct: 917  YLDFIGPALIRHSDMEAHRAPGLLAPEDIAHDPARFHIRMLQQSELLEDSPEERAEEKSK 976

Query: 729  TIKQLMDEQKIPKKLF---------------------------------SPIKNDINEPY 755
             +K +   + IP                                        +++ +   
Sbjct: 977  RLKAIQHGEPIPDSFSFDDQARRLLEWEYPYRKLTAIRTKQSVSELKRKQEYEDEYSGRS 1036

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT--SYCTKNA 813
            ++ PS      K     +        +G  +H ++Q I        +          +  
Sbjct: 1037 LIKPSGDTLLYKRPGFMMKKGLTAAEKGTAMHTVMQHIPLTHVPTAEEAERTVRMLYEKE 1096

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINC---------PKKDII 863
             L   ++    +  + +     +    +       EV  S  +             + ++
Sbjct: 1097 LLTEEQQDAIDIDEVIQFFGTEIGKDLVGALRIDREVPFSMALPASEVYKDAETAGEPLL 1156

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYP 916
            + G ID +  +   +++ +YKT                 +   +  Q+ +Y K ++    
Sbjct: 1157 VQGIIDCLYETADGLYLLDYKTDRIEGKFRNGFEGAAPILQKRYETQIELYTKAVEQITK 1216

Query: 917  NKSLVCLLIYVSEPKVFII 935
                   L +     V  +
Sbjct: 1217 TNVKRRALYFFDGGHVLTL 1235


>gi|167765657|ref|ZP_02437710.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1]
 gi|167712632|gb|EDS23211.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1]
 gi|291559893|emb|CBL38693.1| recombination helicase AddA, Firmicutes type [butyrate-producing
            bacterium SSC/2]
          Length = 1188

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 173/1011 (17%), Positives = 353/1011 (34%), Gaps = 129/1011 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D           I + + L++  G P          L+    +++A       + FS
Sbjct: 214  ILRDARFSIDGAYDTIQEALELALSPGGPYFYEKTLRKDLEIIIKIKEA-------QTFS 266

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY---------- 117
             L   F+  +  P+ +   ++ ++    L+++ K  +++   + D               
Sbjct: 267  ELCESFVKME-KPRLSGRKKKTDEIDEMLQDQCKYERNQAYNLLDDLKAAYFYENESEIF 325

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL------KKRDVSA 167
                ++       + L +     Y+E KK   ++DF+D+     +LL      +   V +
Sbjct: 326  HELRRIKSPLKGLIDLTRKFMIRYDEKKKNENIMDFDDMEHFALELLIDHYDEEGNPVPS 385

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             I  +       I IDE QD++ IQ  ++RS++++   G         +F VGD KQSIY
Sbjct: 386  KIAREKSDGYEEIYIDEYQDSNYIQDAILRSVSKESEGGH-------NMFMVGDVKQSIY 438

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            SF  A P+  L +    Q++    G+++ +IEL  +FRS +++LT V+ VF    +    
Sbjct: 439  SFRLARPELFLEKYHGYQQK----GEEYQLIELRNNFRSRSEVLTFVNDVFYQIMHEDLG 494

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
            + + T               V L   +  +       +     S      +E +  + AR
Sbjct: 495  NIEYTQN-------------VALVPTMEFEQGCDAQTELLLLESNEVKDSEEDAVILEAR 541

Query: 348  RIAYTISNMIGTDTIF--------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
             IA  I  MI  +            N   R  +  DI++L+R  K       + +    +
Sbjct: 542  MIATRIHEMIDGEDPMMVTGKDEEGNMILRKAKYSDIVILLRSMKTNA---EVIQKELMN 598

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              I    N++    D + I+ L++L   + +   D+    +L+SP+   SE+++ ++   
Sbjct: 599  AGIPAFANNQKGYFDTVEIRTLLSLLSVVDNIYMDIDLAAVLRSPMIGMSEEELGRLKVD 658

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-I 518
              E +++YE + +  +    K +  ++ +  L     +        L L           
Sbjct: 659  -GEKDSLYECLCETKDKM-EKSKKALELLDLLRDAKTYLPLTQLIWLALEKSGYYHYAGA 716

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVR 573
               G +    +   +      E +    L   +  +EQ              S + + VR
Sbjct: 717  MPQGKKRQGNILMLVEQAKAFESSQIKGLFHFVRFIEQCREYDMDYGEANTMSEDQDLVR 776

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I ++H +KGLE P+VF+     +         M               + +++ +  + +
Sbjct: 777  ISSIHKSKGLEYPIVFVSKIHQKFNLRDGNGSMIFHGDYFIGADHIDPVYRTRKKTILKN 836

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----------KKSNQRTWYD 683
             +   + + +  E  R+LYV MTRA ++LI+        +           + + R+++D
Sbjct: 837  LIKNQMTRESLGEELRVLYVAMTRAKEKLILTGIKKDDIDWNAKGEVTAIDRLSGRSYFD 896

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL--EREETIKQLMDEQKIPK 741
             +  +     +        ++    W        H  N  +  ER        + + + +
Sbjct: 897  WIKKALPMIPKQDYRLKIYTLEDLLWQQEGNELLHEMNRQIFYERLNDQIPNENVKALKE 956

Query: 742  KLFSPIKNDINEPYILNPSTID----------------------TKGKTNLESLLSDNQT 779
                  +N+      L  S  +                       K   +          
Sbjct: 957  SFAYHYRNEAETKGRLKYSVSEIKRMSQAADTEEVMYSSVFMEKEKRIPSFVKKTERISA 1016

Query: 780  FNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
             ++G IIHK+ +++              I  + +   KL    E       I  L  + +
Sbjct: 1017 ASKGTIIHKVFELLDFSKDYTMKSLNEDIERWISL-GKLKKEYEKVIYRKEILALTRSEL 1075

Query: 837  MTTAMSCD----SYSEVSVSGKINCPKKD--------IIISGRIDQISISQQNIFIFEYK 884
                         Y E      I     D        +++ G ID     +  I + +YK
Sbjct: 1076 GKRMKEAAQKKLLYKERQFVTGIPFSDMDKEAKTDDFVVVQGIIDVYFEEEDKIILVDYK 1135

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            T      E + +   + AQ+  Y++ L+           +  V+  K   +
Sbjct: 1136 TDRVREGEEDILIRRYRAQMESYQQALEKITGKCVKEIYIYSVTLQKTIPV 1186


>gi|47097165|ref|ZP_00234731.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a
            F6854]
 gi|254899032|ref|ZP_05258956.1| hypothetical protein LmonJ_04449 [Listeria monocytogenes J0161]
 gi|254912827|ref|ZP_05262839.1| ATP-dependent nuclease [Listeria monocytogenes J2818]
 gi|254937154|ref|ZP_05268851.1| ATP-dependent nuclease [Listeria monocytogenes F6900]
 gi|47014470|gb|EAL05437.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a
            F6854]
 gi|258609758|gb|EEW22366.1| ATP-dependent nuclease [Listeria monocytogenes F6900]
 gi|293590824|gb|EFF99158.1| ATP-dependent nuclease [Listeria monocytogenes J2818]
          Length = 1235

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 155/1024 (15%), Positives = 342/1024 (33%), Gaps = 130/1024 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   ++ + E   P          L + Q L + + +       +
Sbjct: 226  IKEDIELRVNQAKNYLLNAINYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + +    +  T + K+   +   +++   ++  KK           R+  N     +  
Sbjct: 285  SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K   A++ E K++  VLDF DL      +L   D ++ +     ++   
Sbjct: 345  KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T               LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+  +  G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             ++         +L    +   D++   +         S  +     + +R IA  I  M
Sbjct: 515  GANFPETNAMATELLLIDMKTEDTETEDEL--------SPQELQKNQVESRVIAMKIREM 566

Query: 357  IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIYDKKLKQNRPIQYRDIIILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + + +   D+    +L+SP+   +E+++ +I   + +    + +  Y 
Sbjct: 623  ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLTYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +   +K    ++ ++    ++   +       I       +       G +    L
Sbjct: 683  DITVSETANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + + E   +  +    + 
Sbjct: 923  GNATIRHPAFKELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824
                    +       G  +H L+Q +    +  +++      T +   +    + K + 
Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDILTDVQIKAIN 1102

Query: 825  LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874
            +  I    E+P+  T +        EV  S  +            + ++I G +D +   
Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYEKVDLDERVLIQGVVDSMIEE 1162

Query: 875  QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            ++ I + +YKT              + +   +  Q+ +Y + ++     K     L +  
Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222

Query: 929  EPKV 932
               +
Sbjct: 1223 GQHI 1226


>gi|225570785|ref|ZP_03779808.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM 15053]
 gi|225160247|gb|EEG72866.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM 15053]
          Length = 1204

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 163/1007 (16%), Positives = 325/1007 (32%), Gaps = 106/1007 (10%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT-----LQQASQTQC 61
            L  +   ELI + +        S   + + + ME   P++ ++A       +Q     + 
Sbjct: 207  LESSTYMELIRRQIKLYMADAESLTEEALGVCMEPDGPSVYEEALLADGGIVQSFLAAKS 266

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
             EE +        T+    +   +++E        ++++KK+ ++            + +
Sbjct: 267  YEELYEASGRIKWTKLKANRDKTVSEEKAALVKAARDEVKKTVNDVAAQYFYQAPDGVLE 326

Query: 122  -------STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK----KRDVSAWIR 170
                   +     +L     A +EE K+   ++DF D+      +L            + 
Sbjct: 327  DMALCKKAMAVLASLVDQFAARFEEQKRTQNMIDFSDMEQYALQILAVKEGDSFAPTAVA 386

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +  Q    I+IDE QD++LIQ  ++                   +F VGD KQSIY F 
Sbjct: 387  GEYQQRFREIMIDEYQDSNLIQETIL-------TSVSTVSQGKNNIFMVGDVKQSIYRFR 439

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLS 288
             + P+  + +      +          I+L  +FRS +++L  V+ +F         G+ 
Sbjct: 440  LSRPELFMEKFHTYDTK----DSSRQRIDLHKNFRSRSEVLETVNYIFEQIMTPALGGIR 495

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             D    +   +             +++           +      ++ P +    + AR 
Sbjct: 496  YDDEAALYTGADYGDGGEESSNNTEILLVDTDLSPFADDEKKEKKEAAPSD--RELEARA 553

Query: 349  IAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            IA  I  ++ T  +     G  R  +  DI++L R  K     + +   + N   I    
Sbjct: 554  IAGRIRKLLDTQKVLDKAAGTYRKARYSDIVILTRSVKG---FSDVFSEVLNKEGIPTYA 610

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---T 463
              R    +   I  L+   R + +++ D+    +LKSP    +++++  I  +  +    
Sbjct: 611  GTREGYFETQEIGVLLDYLRVLNNRKQDIPLAAVLKSPFLGLTDEEMADIKNKAGDLPFH 670

Query: 464  ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFG 522
            E V  Y  +       + +  +  +        +   H+   +IL              G
Sbjct: 671  EAVPAYASREETAAARRLKACLDMMEHFRKKVPYTPIHELLHMILKETGYGDYTAAMPGG 730

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L          E  SY  L   I  +EQ                  + VRIMT+
Sbjct: 731  EQRKANLKMLAEKAKAFESTSYKGLFHFIRYIEQLQKYDVDYGEASLEDEQSDTVRIMTI 790

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE P+VF+   G Q         + +   L           ++KS + +   + K
Sbjct: 791  HKSKGLEFPIVFVSGMGKQFNMMDARSSVVLHARLGVGLDAVDTELRTKSPSLLKRVIQK 850

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK---------------------KS 676
                 +  E  R+LYV +TRA ++LI+      + +K                     ++
Sbjct: 851  EEALDSLGEELRVLYVALTRAKEKLIVTGAVKNAGKKMDSYGLTKRRSERQLSFTQLGRA 910

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER--EETIKQLM 734
                 + +       +E    I+L  + +     A E+  +      L R   E +    
Sbjct: 911  GSYLDWILPAMMRRTEEIPVDIELVTAKDLVRESAGEYIRNRLTAEMLRRWDTERVYDGQ 970

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK---------------------TNLESL 773
                I ++        +++   L  +  + K +                           
Sbjct: 971  MHTLIEEQFSYEYPYSLSKNRKLKYTVSELKKRAYMAEEAGELLYEEEEVVPLIPEFLKE 1030

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRL 831
              +    +RG   H+LL+++    +H   +          +     +    +    I   
Sbjct: 1031 GEELTGASRGTAYHRLLELLDFTADHADASLKAEIIRLRDEGKMTADMAECIRTEDILGF 1090

Query: 832  LENPMMTTAMSC----DSYSEVSV--------SGKINCPKKDIIISGRIDQISISQQNIF 879
            L                 Y E                   + I++ G ID        + 
Sbjct: 1091 LNCGAGRRMREAAGNQRLYKEQPFVLGTDAREMYPDEAEGELILVQGIIDVYFEEADGLV 1150

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            + +YKT          +   + AQL  Y + L+     K +   +IY
Sbjct: 1151 VLDYKTDRVKSAG--ELKEKYHAQLDYYARALEQI-TGKHVKEKIIY 1194


>gi|319650046|ref|ZP_08004195.1| AddA protein [Bacillus sp. 2_A_57_CT2]
 gi|317398227|gb|EFV78916.1| AddA protein [Bacillus sp. 2_A_57_CT2]
          Length = 1250

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 158/1044 (15%), Positives = 331/1044 (31%), Gaps = 139/1044 (13%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERF 66
             + +D+          +   + L+   G P          L    TL +A +       +
Sbjct: 223  SLLEDIDLQLKGARQLLEYGLELTKLPGGPAPRAENFIADLHVVNTLIEA-KNDSWPMLY 281

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKM 119
              + S+   +  T + N   + + +K+  L+++ KK      +               +M
Sbjct: 282  EAMQSWSFGRAKTCKGNDYDEGLVEKAKKLRDQAKKIITGLQEELFFRKQESFMRDMAEM 341

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174
                 + ++L K  +  +++ K +  ++DF DL     ++L   D       +       
Sbjct: 342  KPHIESLVSLVKEFSIRFDQVKTEKGLVDFADLEHFCLEILSSSDEEGRLLPSEAALACR 401

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +   +L+DE QDT+++Q  +++ +T D             LF VGD KQSIY F  AEP
Sbjct: 402  NQFKEVLVDEYQDTNMVQEAILQLVTADS-------EENGNLFMVGDVKQSIYRFRLAEP 454

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292
               L +     +    AG     I+L  +FRS  ++L   + +F          +  D  
Sbjct: 455  NLFLSKYTRFGRDGEEAGL---RIDLARNFRSRKEVLHGTNYIFKQIMGTSVGEIEYDQA 511

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              +   +              +  + + +  P+ ES    FDS  + + + + AR +A  
Sbjct: 512  AELIKGAPYSESQEHPVEIAIIDLEGNEKNEPEPESMDEGFDS-EELAQSQLEARFMASK 570

Query: 353  ISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I  +IG      N K    R  + +DI++L+R     P              I V  N  
Sbjct: 571  IKEIIGNRKEVYNTKTESGRPAKYRDIVILLRSMTWAP----QIMEEFKQQGIPVYANLS 626

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
                +   +  +M+L + I +   D+    +L+SP+   +E+++ +I             
Sbjct: 627  SGYFEATEVAIMMSLLKVIDNPYQDIPLASVLRSPILGLTEEELAQIRIHNKRGSFYEAL 686

Query: 470  IQKFANCG-------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRF 521
                 N           K +     + +   +A+  S  +    +    +          
Sbjct: 687  TSFCRNDPTLETEELYEKVRPFFDQLKDWRVMARQGSLSELIWHLYRETRFYDFVGGMPG 746

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMT 576
            G +    L    +   + E  S+  L   +  +E+           RA     + VR+MT
Sbjct: 747  GKQRQANLRALYDRARQYEATSFRGLFRFLRFIERMRDRGDDLGAARALGEQEDVVRLMT 806

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H++KGLE P VF+        +    K   +               +    +       
Sbjct: 807  IHSSKGLEFPFVFIAGLARNFNTMDLKKPFLLDKEFGFAAKYVNAEKRISYPSLPQIAFK 866

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSN 677
            +  K     E  R+LYV +TRA ++L +     ++++K                   +++
Sbjct: 867  RKKKMEMLAEEMRVLYVALTRAKEKLFLVSSVKSADKKLNQWLQASEHKEWLLNEYDRAS 926

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI------- 730
              ++ D +  S       + ++    ++                T ++ EE         
Sbjct: 927  ANSYLDWIGPSLVRHRDCEALRGEGPVHPLVPAEILEHPSCWNITIIKSEEAAVLSEEAN 986

Query: 731  -------------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK---- 767
                                   D+ +         K         + S +  + +    
Sbjct: 987  EGETDLLQLVYEGKPVPAESAYKDKVEEQLSWKYSFKQAAQARSKQSVSEVKRQREIFSE 1046

Query: 768  -----------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                                           RG  +H ++Q I        +   +    
Sbjct: 1047 EDSGTELIRKINKPLLGRPRFMQEKSLSPAERGTAMHAVMQHIDFSRPATVETISSKMAE 1106

Query: 811  -KNAKLWPAKEYKNLLLS-ITRLLENPMMTTA-MSCDSYSEVSVSGKINC---------P 858
                +L   +++ ++    I +  E  +      +     E+  S               
Sbjct: 1107 MLQNELLTEEQHASIEPQLIVQFFETELGQRIVQAKSVRREIPFSLSFPAREIYSDWKGE 1166

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTH----HHVPQEIEHIP---YTHIAQLSIYEKIL 911
             + ++I G +D +   +Q + + +YKT            E  P     +  Q+ +Y + L
Sbjct: 1167 DETVLIQGIVDCVIEDEQGLVLLDYKTDGISGRFKGGFAEAKPVLENRYKVQIDMYTRAL 1226

Query: 912  KDSYPNKSLVCLLIYVSEPKVFII 935
            +     +     L +        +
Sbjct: 1227 EQILKREVNERYLFFFDGAHTLKL 1250


>gi|315304458|ref|ZP_07874741.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596]
 gi|313627172|gb|EFR96022.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596]
          Length = 1236

 Score =  393 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 158/1027 (15%), Positives = 341/1027 (33%), Gaps = 129/1027 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            I + +    +   +D+   +  + +T  P          L +   L Q       E+   
Sbjct: 226  IKEAIELRIHQTKNDLLTAIDYASDTDGPAPYLDTLEGDLAQINMLFQMDWN-SWEDVKI 284

Query: 68   LLSSFFLTQKFTPQKN--------IITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYK 118
             + S    +  T +            T++    +  ++K  L +      ++    +  K
Sbjct: 285  SIESVDFKRLPTLKNKSDYDEEYVEQTKKFRDAAKKEIKNVLIEWFSR-NEVNYLADLEK 343

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            M  +  A   L K    ++ E K+K  VLDF DL      +L K    + +     ++  
Sbjct: 344  MKPNIKALSELVKKFAQNFFEEKQKRGVLDFNDLEHLALKILLKDGTPSEVAKSYQKQFK 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             +LIDE QDT+++Q  ++  +T         + +   LF VGD KQSIY F  AEP   +
Sbjct: 404  EVLIDEYQDTNMVQEIILMLVT-------TMNGTKGNLFMVGDVKQSIYRFRLAEPTLFM 456

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIR 296
             + +  Q+  T+ G     I+L  +FRS  ++L V + +F    + +   +  D+   + 
Sbjct: 457  TKYQAYQQDGTSGGI---RIDLSRNFRSRKEVLDVTNFIFHQLMDNKVAEIDYDNAAELT 513

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
              +              +  + + +             S  +     + AR IA  +  M
Sbjct: 514  LGAHFPESKDMATELLLIDMKTEEKETEDDAL------SPQELQKNQVEARAIALKVREM 567

Query: 357  IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R I+ +DI++L R     P I    +       I    N+     
Sbjct: 568  IDNKFPIYDKKMQQNRPIEYRDIVILARAMTSAPDIEEAMK----LQNIPFYANNNSGYF 623

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + I +   D+    +L+SP+   +E+++ +I   + +    + +  + 
Sbjct: 624  ETTEVATMIALLKVIDNPYQDIPLAAVLRSPIIGLTEEELGQIRLAKKKGYFFDALRAFK 683

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +    K    IK ++    ++   +       I       +       G +    L
Sbjct: 684  DNVISEAADKISEFIKQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 743

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +  S   + VR+MT+H +KGLE
Sbjct: 744  RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLSEKEDVVRMMTIHASKGLE 803

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 804  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASAYRDIEKMIVYPTIMQQAMKQKKMREMI 863

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 864  AEEMRVLYVALTRAEEKLILTATVPDFEKTSKQWLQVAKEKETILPAAIRARAKCYLDWI 923

Query: 686  YDSFHNDERVKKI-------KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
              +       K++        L   ++    I         E T  +++  ++++ D Q 
Sbjct: 924  GHALIRHISFKELLCEEGIQPLPTDMSLQIEIKTXXMLLSSEITESKQDNWLEKVRDHQP 983

Query: 739  IP----------KKLFSPIKNDINEPYILNPSTIDTKG---------------------- 766
            +P          + +    K+++        S  + K                       
Sbjct: 984  VPVQSAYKDEIERFMNYQYKDEVATEIRAKQSVTELKRQFTLQDSWSDTTLLKEFQKVSL 1043

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL- 824
                    +       G  +H L+Q +    +             +   +    + K + 
Sbjct: 1044 DRPKFLQQNKLSATEVGTAMHTLMQAVSLESKPSVGEVKQLLQKMREKDILTEAQVKAIN 1103

Query: 825  LLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCP--------KKDIIISGRIDQISIS 874
            +  I    E+ +    +        EV  S  +            + ++I G +D +   
Sbjct: 1104 IEQILAFFESELGEKVLLEKDHVKREVPFSYLLPVAKLYKQANIDEHVLIQGVVDSMIEQ 1163

Query: 875  QQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            + +I + +YKT           +  + +   +  Q+ +Y + ++     +     L +  
Sbjct: 1164 EDSIILIDYKTDKITGRYADWGEAEKVMKNRYQIQIKLYAEAIQAISGKRVSEAYLYFFD 1223

Query: 929  EPKVFII 935
               +  I
Sbjct: 1224 GQHMCRI 1230


>gi|116873698|ref|YP_850479.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b
            str. SLCC5334]
 gi|123466555|sp|A0AL18|ADDA_LISW6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|116742576|emb|CAK21700.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b
            str. SLCC5334]
          Length = 1235

 Score =  393 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/1024 (15%), Positives = 326/1024 (31%), Gaps = 130/1024 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQT-------Q 60
            I +D+        S +   +  + E   P          L +  TL   S T       +
Sbjct: 226  IKEDIELRINQAKSYLLNAIEYASENNGPAPYLETLENDLAQINTLSNISWTNWQDVKLR 285

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKM 119
                 F  + S      +  +    T+     +  ++K  L        +     +  KM
Sbjct: 286  VESMDFKRIPSLKNKSDYDEEYVEETKRFRDAAKKEIKNVLVDWFSR-EETNYLADLEKM 344

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K    ++ E K++  VLDF DL      +L K DV + +     ++   
Sbjct: 345  KPDIKTISELVKNFANNFFEEKQRRGVLDFNDLEHLALKILLKNDVPSDVAKSYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++  +T       N+  S   LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILLLVT-------NSEESKGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+     G     I+L  +FRS  ++L   + +F    +     +  D    +  
Sbjct: 458  KYQEYQQNGEGEGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHVAEIDYDEAAELTL 514

Query: 298  RS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             +          +L    +  ++++   +         S  +     + AR IA  I  M
Sbjct: 515  GANFPKSNHMATELLLIDMKSNENESEDEL--------SPQELQKNQVEARAIATKIREM 566

Query: 357  IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    ++     
Sbjct: 567  IDNKFPIYDKKLQQNRSIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYASNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + I +   D+    +L+SP+   +E+++ +I   + +    + +  Y 
Sbjct: 623  ETTEVATMIALLKVIDNPYQDIPLAAVLRSPIVGLNEEELGQIRMAKKKGYFFDALLAYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +    +    I  ++    ++   +       I       +       G +    L
Sbjct: 683  DITVSAAADRISDFITQLNNWRELSIRENLTALIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ ++  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTAFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIISGLSKKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAIKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVSNQKETILPASIRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIA-----------------YEWSTHHPENTPLEREE 728
             ++       K +     I                         E    +        E 
Sbjct: 923  GNTIIRHTSFKDLLCEERIQTLPTEMKLQIEIKTKEMFLTTELEEHKADNWLENVKAHEP 982

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG---------------------- 766
               Q   + +I + +    K+          S  + K                       
Sbjct: 983  VPVQSAYKDEIERFMNYKYKDVAATEIRAKQSVTELKRQFSLQDSWSDTSILKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                    +       G  +H L+Q   +   P  K    +     +   L  A+     
Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLTYKPSEKDLTSLLQSMQEKDILTEAQIKAIN 1102

Query: 825  LLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCP--------KKDIIISGRIDQISIS 874
            +  I    ++P+  T +  S     EV  S  +           ++ ++I G +D +   
Sbjct: 1103 IKQIMGFFDSPLGETVLQKSDQVKREVPFSYLLPVAKLYKQSDLEEHVLIQGVVDSMIEE 1162

Query: 875  QQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            +  I + +YKT              + +   +  Q+ +Y + ++     K     L +  
Sbjct: 1163 EDAITLIDYKTDKIEGRYANWEAAEKVMKERYQIQIKLYAEAIQAITGKKVSNAYLYFFD 1222

Query: 929  EPKV 932
               +
Sbjct: 1223 GQHI 1226


>gi|89098018|ref|ZP_01170904.1| AddA [Bacillus sp. NRRL B-14911]
 gi|89087181|gb|EAR66296.1| AddA [Bacillus sp. NRRL B-14911]
          Length = 1254

 Score =  393 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/1040 (15%), Positives = 324/1040 (31%), Gaps = 139/1040 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPT-------ILKKAQTLQQASQTQCIEERFSLLSS 71
            D+          +   + L+   G P           +A     A+           +  
Sbjct: 230  DIGLQLEGARQLLENALELAKTPGGPAPRAENYMDDIRAVETLIAANNDSWSSLNEAMQL 289

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-------KMFKSTL 124
            +   +    + +    ++ K++   ++K KK   +                  +M     
Sbjct: 290  WSFGRAKNCKGDEYDPDLVKQAQKYRDKAKKMIQDLQAEFFSRRPESFIRDIGEMKPHID 349

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS-------AWIRYKIDQEI 177
              + L +  +  +   K +  ++DF DL     ++L             +          
Sbjct: 350  VLVRLVRSFSEKFNSVKSEKGLVDFADLEHFCLEILSDPSARKEGAILPSEPALTYRDHF 409

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              +L+DE QDT+++Q  +++ +T++             LF VGD KQSIY F  AEP   
Sbjct: 410  REVLVDEYQDTNMVQEAILQLVTKEG-------EETGNLFMVGDVKQSIYRFRLAEPNLF 462

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295
            L +           G K   I+L  +FRS  ++L   + +F      +   +  D    +
Sbjct: 463  LGKYTRFTVDGEKTGLK---IDLARNFRSRKEVLDGTNFLFKQVMGKKVGEIDYDQAAEL 519

Query: 296  RHRSSRIGQ-VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
               +S        V+L    +   +   + + +   + +D    E S    AR +A  I 
Sbjct: 520  VKGASYPEDLPYPVELHLIDLDGQEKAESGEADETDAGYDLEDLEQS-QHEARLMAEKIK 578

Query: 355  NMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             M+ +         G  R +  +DI++L+R     P I    +       I +  N    
Sbjct: 579  EMLSSGKKVYEPKSGAYRPLMYRDIVILLRSMTWAPQIMEEFK----KQGIPIYANLSSG 634

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
              +   I  +M+L + I +   D+    +L+SP+   +E+++ +I     +  + YE ++
Sbjct: 635  YFEATEITIMMSLLKVIDNPHQDIPLASVLRSPIVGLNEEELAQIRIADKKG-SYYEAMK 693

Query: 472  KFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRFGNEV 525
             F           K +     I E   +A+     +    +               G + 
Sbjct: 694  AFCETKKSGDLYDKVKPFFLDIAEWRSMARKGGLSELIWQLYRDTHFYDFAGGMPGGKQR 753

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTA 580
               L    +   + E+ S+  L   +  +E+           RA     + VR+MT+H++
Sbjct: 754  QANLRALYDRARQYEETSFRGLFRFLRFIERMRERGDDLGAARALGEQEDVVRMMTIHSS 813

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE PVVF      Q  +    K   +               +    +       +  K
Sbjct: 814  KGLEFPVVFAAGLARQFNTMDLKKTYLLDKEYGFAAKYVNPEKRISYPSLPQLAFKRKKK 873

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTW 681
                 E  R+LYV +TRA + L +      +++K                   ++   ++
Sbjct: 874  MEMLAEEMRVLYVALTRAKEHLFLVASVKNADKKLAGWQQGAKKDSWLLDEYDRAAASSY 933

Query: 682  YDMVYDSFHNDERVKKIK------------------------------LTNSINKDEWIA 711
             D +  +       + ++                                      +   
Sbjct: 934  LDWIGSALIRHRDGEPLRSGQEDAAAGSQGEIALHPSSWSVEVRQAAVTPAQDEDSDEAG 993

Query: 712  YEWSTHHPENTPLEREETIKQ-----LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +W     E  P+  E   K+     L  +   P       K  ++E    +    +  G
Sbjct: 994  EQWIDSVYEGKPVPAESPFKEKIKNSLSWQYSYPSAASHKSKQSVSEMKRQSEVKDEESG 1053

Query: 767  ------------KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                                       RG  +H ++Q          ++          +
Sbjct: 1054 SDLVRNLKKPILNRPRFMQEKSMTPAERGTAMHMVMQHADLSNPVTEESIERQLAEMKDR 1113

Query: 815  LWPAKEYKNLLL--SITRLLENPMMTTA-MSCDSYSEVSVSGKINCP---------KKDI 862
                 E   ++    I    ++P+      +     EV  +  +            ++ +
Sbjct: 1114 ELLTDEQVQVIDPALIAGFFQSPLGQRMRKAARIQREVPFNLALPARTAYPDWKGTEEPV 1173

Query: 863  IISGRIDQISISQQNIFIFEYKTH----HHVPQEIEHIP---YTHIAQLSIYEKILKDSY 915
            ++ G ID I   +    + +YK+      +     E +P     +  Q+S+Y K  +   
Sbjct: 1174 LVQGIIDCIFEDEHGTVLLDYKSDSIHGRYTGGFEEAMPVLKRRYDVQISLYAKAYEAIT 1233

Query: 916  PNKSLVCLLIYVSEPKVFII 935
             +      L +     +  +
Sbjct: 1234 KDPVDERYLFFFDGGHILKL 1253


>gi|153813842|ref|ZP_01966510.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756]
 gi|145848238|gb|EDK25156.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756]
          Length = 1197

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/1002 (15%), Positives = 324/1002 (32%), Gaps = 103/1002 (10%)

Query: 11   ESYELIYKDLWP----LPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQ 58
            E+ E + +                I + + +  E   P          L+  + +++ S 
Sbjct: 203  EAAEAMIRRAKEHVLIRIEEPEKLIRRGLKICEEPDGPYMYADMLEEDLRGIEKIRKCSD 262

Query: 59   TQCIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               + +         L++K       +K    + + +++      +K++     +   + 
Sbjct: 263  FAEMYDAADRFVWKTLSRKKDDSVSAEKRESVKALREQAKKAIAGVKETYFYAPESVWKE 322

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIR 170
            +     +S    ++L K     + E K+   ++DF D+     D+L +      V + + 
Sbjct: 323  DMVSAGESVKTLVSLVKLFAEKFAEKKRGRNMIDFNDMERFALDILTEEKNGELVPSAVA 382

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +  ++   I+IDE QD++ +Q  ++                   +F VGD KQSIYSF 
Sbjct: 383  GEYAKQFEEIMIDEYQDSNFVQETIL-------TSVSGQAEGKNNIFMVGDVKQSIYSFR 435

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLS 288
             + P+  +++                 I+L  +FRS  ++L  V+ +F         G+ 
Sbjct: 436  LSRPELFMQKYNTYS----LEDSDRQRIDLHKNFRSRGEVLDSVNYIFRRIMKKEMGGIE 491

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             D +  +   +                    +    + E           E+     AR 
Sbjct: 492  YDDSAALYLGAKFPKTEEIEAKRYISSECERNTDLFKTELLILKDRDKEAENVRRSEARM 551

Query: 349  IAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            IA  I +++    +     G+ R +Q KDI++L R  K           +  +  I    
Sbjct: 552  IARRIKSLMRGGVVSDKKTGEYRPVQYKDIVILTRSVKGWA---EDFSAVLAEEGIPAYS 608

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-----H 461
              R    +   +  L+   + + +   DL    +L SPL N   +D+ KI         H
Sbjct: 609  VSREGYFETYEVSVLLDYLKILDNGRQDLPLAAVLASPLGNLLTEDMAKIRVAYPDVPFH 668

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISR 520
            E+  +Y   +        +       +        +   HD  T I+     G       
Sbjct: 669  ESARMYASEEAQDPVLKDRLMRFFSQVDHFRKKVSYTPIHDLLTEIIEETGFGIYISAME 728

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575
             G +    ++  +      E  SY  L   +  +EQ                  + VRIM
Sbjct: 729  GGVQRAANVEMLVEKAKAFEGTSYKGLFHFVRYIEQLKKYDVDYGEAGIMDEQADTVRIM 788

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            ++H +KGLE PVVF    G Q  +      M + P             ++K+   +   +
Sbjct: 789  SIHKSKGLEFPVVFAAGMGKQFNTQDTKSSMILHPEWGIGIDKIDLKRRTKAPTFLKKLI 848

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--------SNTSNEKKSNQRTWYDMVYD 687
             +        E  R+LYV +TRA ++LI+           S       +  ++++D +  
Sbjct: 849  REEAMYEMWAEEMRILYVALTRAKEKLIMTGVLPDRFIMRSGKDGVITAGAKSYFDWIIP 908

Query: 688  SFHNDERVKKIKLTNS----INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI---- 739
            +  ++E    ++           ++  A        +      +      + + +I    
Sbjct: 909  ALWSEEEEAALEDAPVCIFQYTGNDIGADILQVKSEQLALDVLKHWDVTKVYDPEIRKCL 968

Query: 740  --PKKLFSPIKNDINEPYILNPSTIDTKGKTNLES-------------------LLSDNQ 778
                    P  ++         S +  +     E+                         
Sbjct: 969  DEQADYVYPYYSEGGMKMKFTVSELKKRKALQEEAGEEMYKEPQTVPLLPRFIKEEETLS 1028

Query: 779  TFNRGLIIHKLLQVIFTLP--EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-- 834
              +RG   HK L+++      E            ++ +L            + R L    
Sbjct: 1029 GASRGSAYHKFLELLDFAKEYEADDLEAEVERLAEDGRLSREMAECIETEDMMRFLRTKS 1088

Query: 835  --PMMTTAMSCDSYSEVSVSGKI--------NCPKKDIIISGRIDQISISQQNIFIFEYK 884
               M+  A +   Y E      +        +   + I++ G ID     +  + + +YK
Sbjct: 1089 GVRMLQAARNRKLYKEQPFVISVNASEIYQGDLSGEKILVQGIIDVYFEEEDGLVVLDYK 1148

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            T     +  + +   + AQL  Y   L      K++   +IY
Sbjct: 1149 TDQVKSR--KELVEKYHAQLEYYAHALSQL-TGKTVKEKIIY 1187


>gi|168185692|ref|ZP_02620327.1| recombination helicase AddA [Clostridium botulinum C str. Eklund]
 gi|169296499|gb|EDS78632.1| recombination helicase AddA [Clostridium botulinum C str. Eklund]
          Length = 1236

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/987 (16%), Positives = 325/987 (32%), Gaps = 124/987 (12%)

Query: 56   ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-KSQDEFIKIRDRF 114
             S     +  ++ LS     +  T + N   ++  +K  D++ K+K + QD+  K    +
Sbjct: 266  LSAKTSWDSLYNDLSEVKFGRLRTCR-NCEDKDTQEKVKDIRNKVKKQLQDDIKKKITSY 324

Query: 115  NTYKMFKSTLASL-------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            NT ++    +           L       Y +AKK+  ++DF D      ++L   +   
Sbjct: 325  NTKEIVADLINLYPIMKSLCDLVIEFMNRYSKAKKERGIIDFNDFEHFCLEILSHEE--- 381

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             +  K+ ++   IL+DE QD++ +Q  +I S+             P  +F VGD KQSIY
Sbjct: 382  -VALKLRKKYIEILVDEYQDSNYVQEAIINSIARR----DQETGDPINVFMVGDVKQSIY 436

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQ 285
             F  A+P+      +           K   + L  +FRS  ++L  V+ +F     EN  
Sbjct: 437  RFRQAKPEL---FLKKYSSYLEEESAKERKVNLFKNFRSRKEVLAGVNFIFKQIMSENIG 493

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             L       +   +         ++   +      +   + +      + +       + 
Sbjct: 494  ELEYGDDEALYLGADFEEYEDKSRIGGSIELNLIEKSKEEAKEDEGEEEEILSNI--QVE 551

Query: 346  ARRIAYTISNMIG-------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            AR +A  I+ ++                  R I+ +DI++L+R       I         
Sbjct: 552  ARFVAKKINELVNPKMGEPFKVYDNDLKTYRNIEYRDIVILLRSTSSWAPI---FMDEMK 608

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
            +  I    +      + + IK +++L + I +   D+  + +L+SP+ +F+ +++  I  
Sbjct: 609  ENLIPAYADVGNGYFETVEIKTMLSLLQIIDNSRQDIPLIAVLRSPIASFTPEELIDIRL 668

Query: 459  QRHETETV--------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +  E +           E           K    ++ +      +      +F   +   
Sbjct: 669  ENKEGDFYGGLLKIVNSEEKDDTWIKFKRKCNVFLQKLSYWRQKSIHMPIDEFIWYLYME 728

Query: 511  KKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRA 564
                    +   G +    L        + E+ SY  L   I+ +             + 
Sbjct: 729  TGYYGYVGALAGGIQRQANLKILFQRARQYEKTSYKGLFNFINFINRLKVSSGDMGSAKI 788

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
               N N VRIM++H +KGLE PVV L   G         K++     L   P       +
Sbjct: 789  LGENDNVVRIMSIHKSKGLEFPVVILSALGKNFNMQDLNKRILYHDELGFGPDYIDLEKR 848

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT---- 680
                  I S L K +K  +  E  R+LYV +TRA ++LI+    N   +           
Sbjct: 849  IAYETVIKSALKKKIKLESLSEEMRILYVALTRAKEKLILTGAVNDIEKSAKKWSYALQG 908

Query: 681  ---------------WYDMVYDSFHNDERVKKIKLTNSIN-------------------- 705
                           + D +       +  + ++    I                     
Sbjct: 909  DNYKISQYQVLTGKNYLDWICPVIMRHKDGEVLRKLAGIEIFEKVNLISDDSSWQVTTDN 968

Query: 706  -----------KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                        +  +       + + T    +E  ++L  + +  +    P    + E 
Sbjct: 969  ISAILQDDNKSSEIILEDVKEIENIDETSSYYDEINERLNFKYEYIESSKLPTLLTVTEL 1028

Query: 755  YILNPSTIDTK-----------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
              +  S++               +          +   +G  +H ++Q I    E   +N
Sbjct: 1029 KRMKNSSMYEDYSRDMYTPKLVKRPMFMEKDRKLKGAEKGTAMHAVMQKINYTDELTIEN 1088

Query: 804  FITSYCTKNAKLWPAKEYKN--LLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINCPK- 859
                  T   K +  KE  +      I    ++ +    + + +   E     ++   + 
Sbjct: 1089 IKKQIKTMVEKEFITKEQADSVEPERILNFFKSDIGRRLLKAENVKRETPFHMELKSTEI 1148

Query: 860  -----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       ++I+I G ID     +  + + +YK+ +    + E I   +  Q+  Y 
Sbjct: 1149 YENLPQEIYDSENIMIQGIIDCYFEEENGVVLLDYKSDYFKKGQEEFIIKKYKVQIEYYA 1208

Query: 909  KILKDSYPNKSLVCLLIYVSEPKVFII 935
            + +++          L      K   I
Sbjct: 1209 RAIEELTGKSVKEKYLYLFYGDKEVEI 1235


>gi|217963572|ref|YP_002349250.1| recombination helicase AddA [Listeria monocytogenes HCC23]
 gi|251764533|sp|B8DF44|ADDA_LISMH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|217332842|gb|ACK38636.1| recombination helicase AddA [Listeria monocytogenes HCC23]
 gi|307571852|emb|CAR85031.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes L99]
          Length = 1235

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 156/1024 (15%), Positives = 336/1024 (32%), Gaps = 130/1024 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   +  + E   P          L + Q L + + +       +
Sbjct: 226  IKEDIELRVNQAKNYLLNAIDYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + +    +  T + K+   +   +++   ++  KK           R+  N     +  
Sbjct: 285  SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K   A++ E K++  VLDF DL      +L   D ++ +     ++   
Sbjct: 345  KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNGDKASEVAQNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T               LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+  +  G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             +          +L    +   D++   +         S  +     + +R IA  I  M
Sbjct: 515  GAKSPETNAMATELLLIDMKTEDTETEDEL--------SPQELQKNQVESRTIAMKIREM 566

Query: 357  IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIYDKKLKQNRPIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + + +   D+    +L+SP+   +E+++ +I   + +    + +  Y 
Sbjct: 623  ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLAYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +    K    ++ ++    ++   +       I       +       G +    L
Sbjct: 683  DITVSETADKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + + E   +  +    + 
Sbjct: 923  GNATIRHSAFKELLCEEMIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  VPIQSPYKDEIQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDNWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                    +       G  +H L+Q   +   P  +    +     +   L  A+     
Sbjct: 1043 DRPKFLQKNKLSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLRTMREKDILTDAQIKAIN 1102

Query: 825  LLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISIS 874
            +  I    E+P+  T +        EV  S  +            + ++I G +D +   
Sbjct: 1103 IKQILDFFESPLGETMLQKKDLVKREVPFSYLLPVSELYENVDIDERVLIQGVVDSMIEE 1162

Query: 875  QQNIFIFEYKTHHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            ++ I + +YKT              + +   +  Q+ +Y + ++     K     L +  
Sbjct: 1163 EETITLIDYKTDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFD 1222

Query: 929  EPKV 932
               +
Sbjct: 1223 GQHI 1226


>gi|317501978|ref|ZP_07960162.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium
            8_1_57FAA]
 gi|316896658|gb|EFV18745.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium
            8_1_57FAA]
          Length = 1197

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/1002 (15%), Positives = 323/1002 (32%), Gaps = 103/1002 (10%)

Query: 11   ESYELIYKDLWP----LPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQ 58
            E+ E + +                I + + +  E   P          L+  + +++ S 
Sbjct: 203  EAAEAMIRRAKEHVLIRIEEPEKLIRRGLKICEEPDGPYMYADMLEEDLRGIEKIRKCSD 262

Query: 59   TQCIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               + +         L++K       +K    + + +++      +K++     +   + 
Sbjct: 263  FAEMYDAADRFVWKTLSRKKDDSVSAEKRESVKALREQAKKAIAGVKETYFYAPESVWKE 322

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIR 170
            +     +S    ++L K     + E K+   ++DF D+     D+L +      V + + 
Sbjct: 323  DMVSAGESVKTLVSLVKLFAEKFAEKKRGRNMIDFNDMERFALDILTEEKNGELVPSAVA 382

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +  ++   I+IDE QD++ +Q  ++                   +F VGD KQSIYSF 
Sbjct: 383  GEYAKQFEEIMIDEYQDSNFVQETIL-------TSVSGQAEGKNNIFMVGDVKQSIYSFR 435

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLS 288
             + P+  +++                 I+L  +FRS  ++L  V+ +F         G+ 
Sbjct: 436  LSRPELFMQKYNTYS----LEDSDRQRIDLHKNFRSRGEVLDSVNYIFRRIMKKEMGGIE 491

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             D +  +   +                    +    + E           E+     AR 
Sbjct: 492  YDDSAALYLGAKFPKTEEIEAKRYISSECERNTDLFKTELLILKDRDKEAENVRRSEARM 551

Query: 349  IAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            IA  I +++    +     G+ R +Q KDI++L R  K           +  +  I    
Sbjct: 552  IARRIKSLMRGGVVSDKKTGEYRPVQYKDIVILTRSVKGWA---EDFSAVLAEEGIPAYS 608

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-----H 461
              R    +   +  L+   + + +   DL    +L SPL N   +D+ KI         H
Sbjct: 609  VSREGYFETYEVSVLLDYLKILDNGRQDLPLAAVLASPLGNLLTEDMAKIRVAYPDVPFH 668

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISR 520
            E+  +Y   +        +       +        +   HD  T I+     G       
Sbjct: 669  ESARMYASEEAQDPVLKDRLMRFFSQVDHFRKKVSYTPIHDLLTEIIEETGFGIYISAME 728

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575
             G +    ++  +      E  SY  L   +  +EQ                  + VRIM
Sbjct: 729  GGVQRAANVEMLVEKAKAFEGTSYKGLFHFVRYIEQLKKYDVDYGEAGIMDEQADTVRIM 788

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            ++H +KGLE PVVF    G Q  +      M + P             ++K+   +   +
Sbjct: 789  SIHKSKGLEFPVVFAAGMGKQFNTQDTKSSMILHPEWGIGIDKIDLKRRTKAPTFLKKLI 848

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--------SNTSNEKKSNQRTWYDMVYD 687
             +        E  R+LYV +TRA ++LI+           S       +  ++++D +  
Sbjct: 849  REEAMYEMWAEEMRILYVALTRAKEKLIMTGVLPDRFIMRSGKDGVITAGAKSYFDWIIP 908

Query: 688  SFHNDERVKKIKLTNS----INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI---- 739
            +   +E    ++           ++  A        +      +      + + +I    
Sbjct: 909  ALWPEEEEAALEDAPVCIFQYTGNDIGADILQVKSEQLALDVLKHWDVTKVYDPEIRKCL 968

Query: 740  --PKKLFSPIKNDINEPYILNPSTIDTKGKTNLES-------------------LLSDNQ 778
                    P  ++         S +  +     E+                         
Sbjct: 969  DEQADYVYPYYSEGGMKMKFTVSELKKRKALQEEAGEEMYKEPQTVPLLPRFIKEEETLS 1028

Query: 779  TFNRGLIIHKLLQVIFTLP--EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-- 834
              +RG   HK L+++      E            ++ +L            + R L    
Sbjct: 1029 GASRGSAYHKFLELLDFAKEYEADDLEAEVERLAEDGRLSREMAECIETEDMMRFLRTKS 1088

Query: 835  --PMMTTAMSCDSYSEVSVSGKI--------NCPKKDIIISGRIDQISISQQNIFIFEYK 884
               M+  A +   Y E      +        +   + I++ G ID     +  + + +YK
Sbjct: 1089 GVRMLQAARNRKLYKEQPFVISVNASEIYQGDLSGEKILVQGIIDVYFEEEDGLVVLDYK 1148

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            T     +  + +   + AQL  Y   L      K++   +IY
Sbjct: 1149 TDQVKSR--KELAEKYHAQLEYYAHALSQL-TGKTVKEKIIY 1187


>gi|331088205|ref|ZP_08337124.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330408449|gb|EGG87915.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1197

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/1002 (15%), Positives = 324/1002 (32%), Gaps = 103/1002 (10%)

Query: 11   ESYELIYKDLWP----LPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQ 58
            E+ E + +                I + + +  E   P          L+  + +++ S 
Sbjct: 203  EAAEAMIRRAKEHVLIRIEEPEKLIRRGLKICEEPDGPYMYADMLEEDLRGIEKIRKCSD 262

Query: 59   TQCIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               + +         L++K       +K    + + +++      +K++     +   + 
Sbjct: 263  FAEMYDAADRFVWKTLSRKKDDSVSAEKRESVKALREQAKKAIAGVKETYFYAPESVWKE 322

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIR 170
            +     +S    ++L K     + E K+   ++DF D+     D+L +      V + + 
Sbjct: 323  DMVSAGESVKTLVSLVKLFAEKFAEKKRGRNMIDFNDMERFALDILTEEKNGELVPSAVA 382

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +  ++   I+IDE QD++ +Q  ++                   +F VGD KQSIYSF 
Sbjct: 383  GEYAKQFEEIMIDEYQDSNFVQETIL-------TSVSGQAEGKNNIFMVGDVKQSIYSFR 435

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLS 288
             + P+  +++                 I+L  +FRS  ++L  V+ +F         G+ 
Sbjct: 436  LSRPELFMQKYNTYS----LEDSDRQRIDLHKNFRSRGEVLDSVNYIFRRIMKKEMGGIE 491

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             D +  +   +                    +    + E           E+     AR 
Sbjct: 492  YDDSAALYLGAKFPKTEEIEAKRYISSECERNTDLFKTELLILKDRDKEAENVRRSEARM 551

Query: 349  IAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            IA  I +++    +     G+ R +Q KDI++L R  K           +  +  I    
Sbjct: 552  IARRIKSLMRGGVVSDKKTGEYRPVQYKDIVILTRSVKGWA---EDFSAVLAEEGIPAYS 608

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-----H 461
              R    +   +  L+   + + +   DL    +L SPL N   +D+ KI         H
Sbjct: 609  VSREGYFETYEVSVLLDYLKILDNGRQDLPLAAVLASPLGNLLTEDMAKIRVAYPDVPFH 668

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISR 520
            E+  +Y   +        +       +        +   HD  T I+     G       
Sbjct: 669  ESARMYASEEAQDPVLKDRLMRFFSQVDHFRKKVSYTPIHDLLTEIIEETGFGIYISAME 728

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575
             G +    ++  +      E  SY  L   +  +EQ                  + VRIM
Sbjct: 729  GGVQRAANVEMLVEKAKAFEGTSYKGLFHFVRYIEQLKKYDVDYGEAGIMDEQADTVRIM 788

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            ++H +KGLE PVVF    G Q  +      M + P             ++K+   +   +
Sbjct: 789  SIHKSKGLEFPVVFAAGMGKQFNTQDTKSSMILHPEWGIGIDKIDLKRRTKAPTFLKKLI 848

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--------SNTSNEKKSNQRTWYDMVYD 687
             +        E  R+LYV +TRA ++LI+           S       +  ++++D +  
Sbjct: 849  REEAMYEMWAEEMRILYVALTRAKEKLIMTGVLPDRFIMRSGKDGVITAGAKSYFDWIIP 908

Query: 688  SFHNDERVKKIKLTNS----INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI---- 739
            +  ++E    ++           ++  A        +      +      + + +I    
Sbjct: 909  ALWSEEEEAALEDAPVCIFQYTGNDIGADILQVKSEQLALDVLKHWDVTKVYDPEIRKCL 968

Query: 740  --PKKLFSPIKNDINEPYILNPSTIDTKGKTNLES-------------------LLSDNQ 778
                    P  ++         S +  +     E+                         
Sbjct: 969  DEQADYVYPYYSEGGMKMKFTVSELKKRKALQEEAGEEMYKEPQTVPLLPRFIKEEETLS 1028

Query: 779  TFNRGLIIHKLLQVIFTLP--EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-- 834
              +RG   HK L+++      E            ++ +L            + R L    
Sbjct: 1029 GASRGSAYHKFLELLDFAKEYEADDLEAEVERLAEDGRLSREMAECIETEDMMRFLRTKS 1088

Query: 835  --PMMTTAMSCDSYSEVSVSGKI--------NCPKKDIIISGRIDQISISQQNIFIFEYK 884
               M+  A +   Y E      +        +   + I++ G ID     +  + + +YK
Sbjct: 1089 GVRMLQAARNRKLYKEQPFVISVNASEIYQGDLSGEKILVQGIIDVYFEEEDGLVVLDYK 1148

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            T     +  + +   + AQL  Y   L      K++   +IY
Sbjct: 1149 TDQVKSR--KELAEKYHAQLEYYAHALSQL-TGKTVKEKIIY 1187


>gi|313632207|gb|EFR99276.1| ATP-dependent nuclease subunit A [Listeria seeligeri FSL N1-067]
          Length = 1236

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 150/950 (15%), Positives = 306/950 (32%), Gaps = 111/950 (11%)

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
                    +  +    ++K  L        ++    +  KM         L K    ++ 
Sbjct: 305  EEYVEEAKKFRDAAKKEIKNVLIDWFSR-NEVNYLADLEKMKPDIETLSNLVKKFAQNFF 363

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            E K+K  VLDF DL     ++L K    + +     ++   +LIDE QDT+++Q  ++  
Sbjct: 364  EEKQKRGVLDFNDLEHLALNILLKEGAPSDVAKSYQKQFKEVLIDEYQDTNMVQETILGL 423

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +T        T+ +   LF VGD KQSIY F  AEP   + + +  ++  TN G     I
Sbjct: 424  VTR-------TNETSGNLFMVGDVKQSIYRFRLAEPTLFMAKYQQYRQDGTNGGI---RI 473

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            +L  +FRS  ++L   + +F    + Q   +  D    +   +              +  
Sbjct: 474  DLSRNFRSRKEVLDATNFIFRQLMDKQVAEIDYDDAAELTLGARFPESQNMSTELLLI-- 531

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQA 373
                    ++   T    S  +     + AR IA  I +M+       + K    R IQ 
Sbjct: 532  ----DMKTEEIEATDDELSPQELQKNQVEARAIAMKIRDMVDNKFPIYDKKMQQNRPIQY 587

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +DI++L R     P I    + L     I    N+     +   +  ++AL + I +   
Sbjct: 588  RDIVILSRAMTSAPDIEEAMKIL----DIPFYANNNSGYFETTEVATMIALMKVIDNPYQ 643

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHE 490
            D+    +L+SP+    E+++ +I   + +    + +  +     +    K    IK ++ 
Sbjct: 644  DIPLAAVLRSPIVGLKEEELGQIRMAKKKGYFFDAMLAFKDAVNSEAADKISEFIKQLNN 703

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
               ++   +       I       +       G +    L    +   + E+ S+  L  
Sbjct: 704  WRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFR 763

Query: 550  LISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             +  +E+           +      + VR+MT+H +KGLE PVV +     +        
Sbjct: 764  FVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVAGLSRKFNMRDIYS 823

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            K  +                      +   + +   +    E  R+LYV +TRA ++LI+
Sbjct: 824  KSLLDKDYGFASAYRDIEKMIVYPTIMQQAIKQKKIREMIAEEMRVLYVALTRAEEKLIL 883

Query: 665  CKHSNTSNEK-------------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
                    +                    ++  + + D V  +       K++     I 
Sbjct: 884  VGTVPDFEKTSKNWLQVAKGKETILPAAVRAKAKCYLDWVGYTLIRHTSFKELLCEELIQ 943

Query: 706  KDEWIAYEWST-----------------HHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                         +        +    Q   + +I + +    K
Sbjct: 944  TLPTDMVLQIEIKTXXMFLSSEKEGVKQDNWMGNIKAHQPVPVQSAYKDEIKRFMNYQYK 1003

Query: 749  NDINEPYILNPSTIDTKG----------------------KTNLESLLSDNQTFNRGLII 786
            ++ +       S  + K                               +       G  +
Sbjct: 1004 DEASTEIRAKQSVTELKRQFTLQDSWSDTTLLKEFQKVSLDRPKFLQKNKLSATEVGTAM 1063

Query: 787  HKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-- 842
            H L+Q   +   P  +    +     +   L  A+     +  I    E+ +    +S  
Sbjct: 1064 HTLMQAVSLENKPSEEDVKQLLQTMMEKDILTDAQVKAINIDQIIGFFESELGQKVLSEK 1123

Query: 843  CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ--- 891
             +   EV  S  +            + ++I G +D +   + +I + +YKT     +   
Sbjct: 1124 ENVKREVPFSYLLPVEKLDKQANLDEHVLIQGVVDSMIEQEDSIILIDYKTDKIAGRYSG 1183

Query: 892  ---EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                 + +   +  Q+ +Y + ++     K     L +     +  I   
Sbjct: 1184 WEVAEKIMKERYQVQIKLYAEAIEAISGKKVSQAYLYFFDGQHICQINTE 1233


>gi|221308901|ref|ZP_03590748.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            subtilis str. 168]
 gi|221313225|ref|ZP_03595030.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            subtilis str. NCIB 3610]
 gi|221318148|ref|ZP_03599442.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            subtilis str. JH642]
 gi|221322423|ref|ZP_03603717.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            subtilis str. SMY]
 gi|255767243|ref|NP_388944.2| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
            subtilis str. 168]
 gi|239938590|sp|P23478|ADDA_BACSU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|225184870|emb|CAB12903.2| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            subtilis str. 168]
          Length = 1232

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/1037 (14%), Positives = 335/1037 (32%), Gaps = 143/1037 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS--- 70
            + +D+  +       + + + L+   G P          L Q  +    ++ FS L    
Sbjct: 222  VKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRV 281

Query: 71   -SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKS 122
             +    +    + +     +  ++ DL+   KK  ++        +         +M   
Sbjct: 282  PAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPV 341

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEI 177
                + L       +E AK++  ++DF DL      +L   +       +       ++ 
Sbjct: 342  IETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQF 401

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            + +L+DE QDT+L+Q  +++ +T       +       LF VGD KQSIY F  AEP   
Sbjct: 402  HEVLVDEYQDTNLVQESILQLVT-------SGPEETGNLFMVGDVKQSIYRFRLAEPLLF 454

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295
            L + +   +     G     I+L  +FRS ADIL   + +F      +   +  D    +
Sbjct: 455  LSKYKRFTESGEGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAEL 511

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            +  ++      T      + +  D+  + +            +  +    A+ IA  I  
Sbjct: 512  KLGAAYPDNDETETELLLIDNAEDTDASEE----------AEELETVQFEAKAIAKEIRK 561

Query: 356  MIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +I +     +GK    R IQ +DI++L+R     P I    R       I V  N     
Sbjct: 562  LISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRA----QGIPVYANLTSGY 617

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467
             + + +   +++ + I +   D+    +L+SP+    E+++  I  +  +         Y
Sbjct: 618  FEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDY 677

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526
                  ++    K      ++ +    ++  S  +    +    K          G +  
Sbjct: 678  LAAGDRSDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQ 737

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581
              L    +   + E  ++  L   +  +E+           RA S   + VR+MT+H++K
Sbjct: 738  ANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 797

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVVF+   G         K   +   L           +       +  + K +++
Sbjct: 798  GLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRR 857

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDERVKKI 698
                E  R+LYV +TRA ++L +        ++ +      +  D +   F   +    +
Sbjct: 858  ELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYL 917

Query: 699  KLTNSINK-----------------------------------DEWIAYEWSTHHPENTP 723
                                                       D+ +             
Sbjct: 918  DFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKSERLEA 977

Query: 724  LEREETIK---QLMDEQKIPKKLFSPIKN---------------------DINEPYILNP 759
            + R E +       ++ +       P +                      + +    + P
Sbjct: 978  IRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKP 1037

Query: 760  STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLW 816
            +      +     +        +G  +H ++Q I         + +  +     K   L 
Sbjct: 1038 ADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKE--LL 1095

Query: 817  PAKEYKNL-LLSITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIIS 865
              ++   + +  I +     +    +       E+  S  +             + +++ 
Sbjct: 1096 TEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQ 1155

Query: 866  GRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            G ID +  ++  +++ +YK+                 +   +  Q+ +Y K ++     K
Sbjct: 1156 GIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTK 1215

Query: 919  SLVCLLIYVSEPKVFII 935
               C L +     +  +
Sbjct: 1216 VKGCALYFFDGGHILTL 1232


>gi|142440|gb|AAA22201.1| ATP-dependent nuclease [Bacillus subtilis]
 gi|2226192|emb|CAA74482.1| ATP-dependent nuclease [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1232

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 152/1037 (14%), Positives = 334/1037 (32%), Gaps = 143/1037 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS--- 70
            + +D+  +       + + + L+   G P          L Q  +    ++ FS L    
Sbjct: 222  VKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRV 281

Query: 71   -SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKS 122
             +    +    + +     +  ++ DL+   KK  ++        +         +M   
Sbjct: 282  PAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPV 341

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEI 177
                + L       +E AK++  ++DF DL      +L   +       +       ++ 
Sbjct: 342  IETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQF 401

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            + +L+DE QDT+L+Q  +++ +T       +       LF VGD KQSIY F  AEP   
Sbjct: 402  HEVLVDEYQDTNLVQESILQLVT-------SGPEETGNLFMVGDVKQSIYRFRLAEPLLF 454

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295
            L + +   +     G     I+L  +FRS ADIL   + +F      +   +  D    +
Sbjct: 455  LSKYKRFTESGEGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAEL 511

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            +  ++      T      + +  D+  + +            +  +    A+ IA  I  
Sbjct: 512  KLGAAYPDNDETETELLLIDNAEDTDASEE----------AEELETVQFEAKAIAKEIRK 561

Query: 356  MIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +I +     +GK    R IQ +DI++L+R     P I    R       I V  N     
Sbjct: 562  LISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRA----QGIPVYANLTSGY 617

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467
             + + +   +++ + I +   D+    +L+SP+    E+++  I  +  +         Y
Sbjct: 618  FEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDY 677

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526
                  ++    K      ++ +    ++  S  +    +    K          G +  
Sbjct: 678  LAAGDRSDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQ 737

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581
              L    +   + E  ++  L   +  +E+           R  S   + VR+MT+H++K
Sbjct: 738  ANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARGLSEQEDVVRLMTIHSSK 797

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVVF+   G         K   +   L           +       +  + K +++
Sbjct: 798  GLEFPVVFVAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRR 857

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDERVKKI 698
                E  R+LYV +TRA ++L +        ++ +      +  D +   F   +    +
Sbjct: 858  ELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQARTYL 917

Query: 699  KLTNSINK-----------------------------------DEWIAYEWSTHHPENTP 723
                                                       D+ +             
Sbjct: 918  DFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKSERLEA 977

Query: 724  LEREETIK---QLMDEQKIPKKLFSPIKN---------------------DINEPYILNP 759
            + R E +       ++ +       P +                      + +    + P
Sbjct: 978  IRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKP 1037

Query: 760  STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLW 816
            +      +     +        +G  +H ++Q I         + +  +     K   L 
Sbjct: 1038 ADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKE--LL 1095

Query: 817  PAKEYKNL-LLSITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIIS 865
              ++   + +  I +     +    +       E+  S  +             + +++ 
Sbjct: 1096 TEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQ 1155

Query: 866  GRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            G ID +  ++  +++ +YK+                 +   +  Q+ +Y K ++     K
Sbjct: 1156 GIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTK 1215

Query: 919  SLVCLLIYVSEPKVFII 935
               C L +     +  +
Sbjct: 1216 VKGCALYFFDGGHILTL 1232


>gi|16801431|ref|NP_471699.1| hypothetical protein lin2368 [Listeria innocua Clip11262]
 gi|81595220|sp|Q929A9|ADDA_LISIN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|16414891|emb|CAC97595.1| lin2368 [Listeria innocua Clip11262]
          Length = 1235

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/1023 (14%), Positives = 332/1023 (32%), Gaps = 128/1023 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
            I +D+        S +   +  + E   P           A         +         
Sbjct: 226  IKEDIQLRINQAKSYLLTAIDYANENNGPAPYLSTLENDLAQINTLSSISWDNWQDVKFG 285

Query: 76   QKF-TPQKNIITQEINKKSPDLKEKLKKSQDE--------FIKIRDRFN------TYKMF 120
             +    ++    +       +  E+ KK +D          I    R          KM 
Sbjct: 286  FESIDFKRIPALKNKADFDEEYVEEAKKFRDAAKKEVKNVLIDWFSREEENYLSDLEKMK 345

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                    L K    ++ E K++  VLDF DL      +L K    + +     ++   +
Sbjct: 346  PDIKTLSELVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKNGAPSDVANSYKKQFKEV 405

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            LIDE QDT+++Q  ++  +T       N++ +   LF VGD KQSIY F  AEP   + +
Sbjct: 406  LIDEYQDTNMVQETILLLVT-------NSNDTKGNLFMVGDVKQSIYRFRLAEPTLFMAK 458

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHR 298
             +  Q+    +G     I+L  +FRS  ++L   + +F    +     +  D    +   
Sbjct: 459  YQEYQQDGEGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDEAAELTLG 515

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            +S             +  + + + +  +        S  +     + +R IA  I  MI 
Sbjct: 516  ASFPEANNMATELLLIDMKSEEKESEDEL-------SPQELQKNQVESRAIATKIREMID 568

Query: 359  TDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                  + K    R IQ +DI++L R     P +    +       I    N+     + 
Sbjct: 569  NKFPIYDKKLQQNRPIQYRDIVILARAMTSAPDMEEAMK----IKDIPFYANNNSGYFET 624

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
              +  ++AL + I +   D+S   +L+SP+   +E+++ +I   + +    ++ +  + +
Sbjct: 625  TEVATMIALMKVIDNPYQDISLAAVLRSPIIGLNEEELGQIRMAKKKG-YFFDAMLAYKD 683

Query: 476  ----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530
                   +K    I  ++    ++   +       I       +       G +    L 
Sbjct: 684  ITVSDAANKISRFITQLNNWRELSIRENLTALIWQIYQETNFYEFVGGLPGGKQRQANLR 743

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585
               +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE 
Sbjct: 744  ALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEF 803

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            PVV +     +        K  +                      +   + +   +    
Sbjct: 804  PVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAIKQKKYREMIA 863

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDMVY 686
            E  R+LYV +TRA ++LI+        +                    ++  + + D + 
Sbjct: 864  EEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVSNQQETILPAAIRAKAKCYLDWIG 923

Query: 687  DSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPENT 722
            ++       K++                         LT+ + K++   +  +    +  
Sbjct: 924  NATIRHSHFKELLCEEKIKTLPTDMKLQVEIKTKEMFLTDDLEKEKSDNWMENVKAHKQV 983

Query: 723  PLE---------------REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            P++               ++E    +  +Q + +        D      +          
Sbjct: 984  PVKSPYKDEIERFMHYQYKDEEATGIRAKQSVTELKRQFSLQDSWSDTSILKEFQKVSLD 1043

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKNAKLWPAKEYKNL-L 825
                   +       G  +H L+Q +    +   K+ ++     +   +    + K + +
Sbjct: 1044 RPKFLQQNKLSATEIGTAMHTLMQAVPLDDKPTEKDLVSLLQLMREKDILTEAQIKAINV 1103

Query: 826  LSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQ 875
              I    E+ +  T +        EV  S  +            + ++I G +D +   +
Sbjct: 1104 NQIIAFFESALGKTVLQKKDKVKREVPFSYLLPAAKLYNQTNLDEHVLIQGVVDSMIEEE 1163

Query: 876  QNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
             +I + +YKT              + +   +  Q+ +Y + ++     K     L +   
Sbjct: 1164 DSIILIDYKTDKIEGRYDNWEAAEKVMKERYQIQIKLYAEAIQAISRKKVSHAYLYFFDG 1223

Query: 930  PKV 932
              +
Sbjct: 1224 QHI 1226


>gi|294497408|ref|YP_003561108.1| ATP-dependent nuclease subunit A [Bacillus megaterium QM B1551]
 gi|294347345|gb|ADE67674.1| ATP-dependent nuclease, subunit A [Bacillus megaterium QM B1551]
          Length = 1245

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/1006 (16%), Positives = 331/1006 (32%), Gaps = 126/1006 (12%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
                    L +   L  AS+     +    + +   T+    +      ++     +L++
Sbjct: 257  RAVNAEEDLAQIHRLISASK-HSFADLHEEMQNLNFTRLKPCKGEAYDSQLLDDFGELRK 315

Query: 99   KLKKSQDEFIKIRDRFNTY-------KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
            K K S ++          +       KM       + L +     YE  KK+  ++DF D
Sbjct: 316  KAKTSLEKLHADLFSRPLHGYMADFEKMKPVIETLIFLVQRFGERYEHMKKEKGLVDFSD 375

Query: 152  LIINTNDLLKKRDV----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            L      +L  ++      + I  K   +   +L+DE QDT+++Q  +I+ +T D     
Sbjct: 376  LEHYCLQILSVKEDGVLKPSSIAQKYRTQFEEVLVDEYQDTNMVQETLIKLVTRDS---- 431

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                    LF VGD KQSIY F  AEP   L + +   +     G     I+L  +FRS 
Sbjct: 432  ---EEQGNLFMVGDVKQSIYRFRLAEPFLFLTKYKRFTQDGRQFG---KRIDLNKNFRSR 485

Query: 268  ADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            + +L   + +F+    E    ++ D   +++  +S     G       +  ++  +   +
Sbjct: 486  SQVLDATNFIFNQLMDEEVGEIAYDDDASLKLGASYPKVEGMETELLLIAKENAEEGGEE 545

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRK 382
            +   +    S  +  +A + AR +A  I  ++       + K    R +  +D ++L+R 
Sbjct: 546  ESDSSLVAFSEAELETAQLEARAMARKIKELVQNRFQIYDRKLDIMRNVTYRDFVILLRS 605

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                  I    +       + +  N      D   +  +M+L + + +   D+    +L+
Sbjct: 606  MPWAAQIMDEFKQE----GVPIYANLSTGYFDATEVMIMMSLLKVVDNPHQDIPLASVLR 661

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH----VIKYIHELIHIAQFC 498
            SP+   S++++  +  ++ +           A     + +       + +      A+  
Sbjct: 662  SPVVGLSDEELATLRAEQKKGTYYDALKTYLAVSDDEELRDKVKYFYEQLKAWRTQARQS 721

Query: 499  SPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
            S  +    I       +       G +    L    +   + E  S+  L   +  +E+ 
Sbjct: 722  SLSELVWQIYRDTGFFEFVGGLPGGKQRQANLRALYDRARQYEATSFRGLFRFLRFIERM 781

Query: 558  -----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                      RA     + VR+MT+H++KGLE PVVF+     Q       K   +   L
Sbjct: 782  QDRGNDLGAARALGEQEDVVRLMTIHSSKGLEFPVVFVAGLARQFNLMDLNKAYLLDKEL 841

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                       +      +   + K +KK +  E  R+LYV +TRA ++LI+      + 
Sbjct: 842  GFGSKYIDPKLRITYPTLLQQTMKKKMKKESMAEEMRVLYVALTRAKEKLILVGTVKDAP 901

Query: 673  EKKSNQRTWYDMVYD---------------------------------------SFHNDE 693
            EK     +                                                H   
Sbjct: 902  EKLRQWSSVMAHEDWTLPAHVRRDAKCYLDWIGPSLIRHQNVSHMVEGEVQPAEMIHQHA 961

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK---LFSPIKND 750
               K+    + +  E    E   H      L++ E + +  D +    +        +  
Sbjct: 962  SSWKLSTLLAGDLAEQPLEEQQHHEELLNALQKHEPVSESSDYKDEVYRRLNWSYDYRVA 1021

Query: 751  INEPYILNPSTID--------------------TKGKTNLESLLSDNQTFNRGLIIHKLL 790
                   + S +                           L           RG   H ++
Sbjct: 1022 SVHRSKQSVSELKRQQQLTDAGGSDDLVRGSKAPLENRPLFLQEKSLTGAERGTATHAVM 1081

Query: 791  QVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-S 845
            Q +           ++FI S  TK   L   ++   +    +   L++ +     +    
Sbjct: 1082 QQLPLNKAYTLEMVQDFIQSMVTKE--LLTQEQADAVDANDVADFLDSDIAQGIRTARTV 1139

Query: 846  YSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVP---QEI 893
            Y E+  S  ++            + I++ G ID +  +++ + + ++KT +       + 
Sbjct: 1140 YREMPFSLGVSAKEIYDHWEQEDETILVQGIIDCLYETEEGLVLLDFKTDNISDRFQGDF 1199

Query: 894  EH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            E     +   +  QL +Y K ++           L ++       I
Sbjct: 1200 ERAKPFLIDRYRIQLELYAKAIERIVKQPVQHRYLYFLDGGHAVEI 1245


>gi|291483547|dbj|BAI84622.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
            natto BEST195]
          Length = 1232

 Score =  390 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/1037 (14%), Positives = 334/1037 (32%), Gaps = 143/1037 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS--- 70
            + +D+  +       + + + L+   G P          L Q  +    ++ FS L    
Sbjct: 222  VKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRV 281

Query: 71   -SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKS 122
             +    +    + +     +  ++ DL+   KK  ++        +         +M   
Sbjct: 282  PAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPV 341

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEI 177
                + L       +E AK++  ++DF DL      +L   +       +       ++ 
Sbjct: 342  IETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGEREPSEAARFYQEQF 401

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            + +L+DE QDT+L+Q  +++ +T       +       LF VGD KQSIY F  AEP   
Sbjct: 402  HEVLVDEYQDTNLVQESILQLVT-------SGPEETGNLFMVGDVKQSIYRFRLAEPLLF 454

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295
            L + +   +     G     I+L  +FRS ADIL   + +F      +   +  D    +
Sbjct: 455  LSKYKRFTESGEGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAEL 511

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            +  ++      T      + +  D+  + +            +  +    A+ IA  I  
Sbjct: 512  KLGAAYPDNDETETELLLIDNAEDTDASEE----------AEELETVQFEAKAIAKEIRK 561

Query: 356  MIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +I +     +GK    R IQ +DI++L+R     P I    R     + I V  N     
Sbjct: 562  LISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRA----HGIPVYANLTSGY 617

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467
             + + +   +++ + I +   D+    +L+SP+    E+++  I  +  +         Y
Sbjct: 618  FEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDY 677

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526
                   +    K      ++ +    ++  S  +    +    K          G +  
Sbjct: 678  LAAGDRNDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQ 737

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581
              L    +   + E  ++  L   +  +E+           RA S   + VR+MT+H++K
Sbjct: 738  ANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 797

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVVF    G         K   +   L           +       +  + K +++
Sbjct: 798  GLEFPVVFAAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRR 857

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDERVKKI 698
                E  R+LYV +TRA ++L +        ++ +      +  D +   F   +    +
Sbjct: 858  ELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYL 917

Query: 699  KLTNSINK-----------------------------------DEWIAYEWSTHHPENTP 723
                                                       D+ +             
Sbjct: 918  DFIGPALARHRDLGDLAGVPAHADISGHPARFAVQMIHSYDLLDDDLEERMEEKSERLEA 977

Query: 724  LEREETIK---QLMDEQKIPKKLFSPIKN---------------------DINEPYILNP 759
            + R E +       ++ +       P +                      + +    + P
Sbjct: 978  IRRGEPVPGSFAFDEKAREQLSWTYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKP 1037

Query: 760  STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLW 816
            +      +     +        +G  +H ++Q I         + +  +     K   L 
Sbjct: 1038 ADGSILYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKE--LL 1095

Query: 817  PAKEYKNL-LLSITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIIS 865
              ++   + +  I +     +    +       E+  S  +             + +++ 
Sbjct: 1096 TEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAQEADEPLLVQ 1155

Query: 866  GRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            G ID +  ++  +++ +YK+                 +   +  Q+ +Y K ++     K
Sbjct: 1156 GIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTK 1215

Query: 919  SLVCLLIYVSEPKVFII 935
               C L +     +  +
Sbjct: 1216 VKGCALYFFDGGHILTL 1232


>gi|325291019|ref|YP_004267200.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus
            glycolicus DSM 8271]
 gi|324966420|gb|ADY57199.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus
            glycolicus DSM 8271]
          Length = 1273

 Score =  390 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 164/1044 (15%), Positives = 327/1044 (31%), Gaps = 166/1044 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             ++  P+    +S + + ++LS         +    +Q    ++                
Sbjct: 254  LQNYIPVLGEDLSHVEELLALSRSGSGHRWDRLLAKMQSVQFSRWPSAGKDA-------- 305

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM---FKSTLASLTLAKYL 133
                 K    + I     ++K +L+K ++          +  +   +        L   L
Sbjct: 306  --DKTKQESVKNIRD---EVKIRLRKIKERIFLTDSAGLSADLKSLYPLMKCLSGLVLDL 360

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDT 188
               Y + K    VLDF DL      +L + D     V + +     +  + IL+DE QD+
Sbjct: 361  GKKYADRKNGKSVLDFNDLEHFCLQVLTQTDEQGNIVPSPVALSYRERFSEILVDEYQDS 420

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            + +Q  +I  LT               +F VGD KQSIY F  A P+  L +       A
Sbjct: 421  NDVQEFMIGMLTGK---------DNPNIFMVGDVKQSIYRFRQARPELFLEKYNSY---A 468

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI------ 302
            +  G     I L  +FRS  +IL  V+ +F    + +      T                
Sbjct: 469  SERGGSDRKILLFKNFRSRPEILNAVNFLFKQIMSEKVGELHYTDAEALNPGAAFEESKT 528

Query: 303  ---GQVGTVQLWEQVV----------SQHDSQCNPQQESWTSYFDSLPQESS-------- 341
                  G V+L+              S    +        ++  D               
Sbjct: 529  ENAEVGGEVELYLLQTGGQAEAGLSDSPDQDEAEAGANGRSNPIDDSAGNEEGRQRDSEN 588

Query: 342  ---------ASILARRIAYTISNMIG--------TDTIFSNGKKRVIQAKDILVLVRKRK 384
                         AR IA  I  +                  + R ++ +DI++L+R   
Sbjct: 589  EEKEEVLENIQCEARLIARLIKQLREPDEKGKVFQVWDKIAERYRCVEFRDIVILLRT-- 646

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
             T   + +         I    +        + I+ +M+L + I +   D+  + +L+SP
Sbjct: 647  -TRNWSEVFMEELTAQGIPAFADTGAGFFKTIEIQVMMSLLQIIDNPLQDIPLLAVLRSP 705

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPH 501
            + +F+ +D+ ++        ++Y+ +Q  A        K     + + +   ++Q  S  
Sbjct: 706  VADFTTEDLAELRLA-DRKASLYKALQILAGSETPAAMKAAAFSQKLLQWRRVSQHLSTE 764

Query: 502  DFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE----- 555
                 +               G +    L        + E+ SY  L   ++ ++     
Sbjct: 765  RLLWRLYQETGYYAAIGAMPLGEQRQANLRILFERARQFEETSYKGLFHFVNFIDKLKDS 824

Query: 556  QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +      +    N N VRIM++H +KGLE PVV L   G +       K + +   L   
Sbjct: 825  RNDLGSAKILGENDNVVRIMSIHKSKGLEFPVVILAGCGKKFNLQDMNKNILLHHDLGFG 884

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-- 673
            P +     +    + +   L + L+  T  E  R+LYV +TRA ++L+I       ++  
Sbjct: 885  PEVVTPSLRLSYPSLLKQALREKLRAETLSEEMRILYVALTRAREKLVITATVKDLDKDV 944

Query: 674  -----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS----INKDEWIAY 712
                             +  +   + D +  +    +         S     +   W   
Sbjct: 945  RKWAESAGSAGEKLPAYEVLHSNRYLDWIGPALMRHQACTLRPHIFSGRLIGDPSIWRIN 1004

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK------- 765
                   +  P  REE+ ++L            P   +      L+              
Sbjct: 1005 TGDIREMKIPPAGREESEQELEKWLDYLTGENQPEGVEPEIERRLSWVYPFAALAGTSAK 1064

Query: 766  ----------------------------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                                         +               G ++H ++Q +    
Sbjct: 1065 LTVTELKRRFEQNSPEEGLAYLYPDMPVKRPMFMEEKKGLSAAEAGTVLHFIMQHL-DYG 1123

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDSY-SEVSVSGKI 855
            +   +  I     K   L   ++ + + +  I   L++ +     +  S   EV  + +I
Sbjct: 1124 KEDIEIQIEKMINK--DLLTKQQAQGIDVNKIRTFLQSDLGRRMCASRSINREVPFNMEI 1181

Query: 856  N------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
                            ++I++ G ID        + + +YKT +        +   +  Q
Sbjct: 1182 PCGEVYEHMDSEVYQGENILLQGVIDCFFEEPDGLVLLDYKTDYVPEGGSGQLRERYRVQ 1241

Query: 904  LSIYEKILKDSYPNKSLVCLLIYV 927
            L+ Y + L+     K +    +Y+
Sbjct: 1242 LAYYARALETL-TGKRVKEKYVYL 1264


>gi|295702782|ref|YP_003595857.1| ATP-dependent nuclease subunit A [Bacillus megaterium DSM 319]
 gi|294800441|gb|ADF37507.1| ATP-dependent nuclease, subunit A [Bacillus megaterium DSM 319]
          Length = 1245

 Score =  390 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/1006 (15%), Positives = 331/1006 (32%), Gaps = 126/1006 (12%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
                    L +   L  AS+     +    + +   T+    +      ++     +L++
Sbjct: 257  RAVNAEEDLAQIHRLISASK-HSFADLHEEMQNLNFTRLKPCKGEAYDSQLLDDFGELRK 315

Query: 99   KLKKSQDEFIKIRDRFNTY-------KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
            K K S ++          +       KM       + L +     YE  KK+  ++DF D
Sbjct: 316  KAKTSLEKLHADLFSRPLHGYMADFEKMKPVIETLIFLVQRFGERYENMKKEKGLVDFSD 375

Query: 152  LIINTNDLLKKRDV----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            L      +L  ++      + I  K   +   +L+DE QDT+++Q  +I+ +T D     
Sbjct: 376  LEHYCLQILSVKEDGVLKPSSIAQKYRTQFEEVLVDEYQDTNMVQETLIKLVTRDS---- 431

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                    LF VGD KQSIY F  AEP   L + +   +     G     I+L  +FRS 
Sbjct: 432  ---EEQGNLFMVGDVKQSIYRFRLAEPFLFLTKYKRFTQDGRQFG---KRIDLNKNFRSR 485

Query: 268  ADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            + +L   + +F+    E    ++ D   +++  +S     G       +  ++  +   +
Sbjct: 486  SQVLDATNFIFNQLMDEEVGEIAYDDDASLKLGASYPKVEGMETELLLIAKENAEEGGEE 545

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRK 382
            +   +    S  +  +A + AR +A  I  ++       + K    R +  +D ++L+R 
Sbjct: 546  ESDSSLVAFSEAELETAQLEARAMARKIKELVQNRFQIYDRKLDIMRNVTYRDFVILLRS 605

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                  I    +       + +  +      D   +  +M+L + + +   D+    +L+
Sbjct: 606  MPWAAQIMDEFKQE----GVPIYADLSTGYFDATEVMIMMSLLKVVDNPHQDIPLASVLR 661

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH----VIKYIHELIHIAQFC 498
            SP+   S++++  +  ++ +           A     + +       + +      A+  
Sbjct: 662  SPVVGLSDEELATLRAEQKKGTYYDALKTYLAVSDDEELRDKVKYFYEQLKAWRTQARQS 721

Query: 499  SPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
            S  +    I       +       G +    L    +   + E  S+  L   +  +E+ 
Sbjct: 722  SLSELVWQIYRDTGFFEFVGGLPGGKQRQANLRALYDRARQYEATSFRGLFRFLRFIERM 781

Query: 558  -----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                      RA     + VR+MT+H++KGLE PVVF+     Q       K   +   L
Sbjct: 782  QDRGNDLGAARALGEQEDVVRLMTIHSSKGLEFPVVFVAGLARQFNLMDLNKAYLLDKEL 841

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                       +      +   + K +KK +  E  R+LYV +TRA ++LI+      + 
Sbjct: 842  GFGSKYIDPKLRITYPTLLQQTMKKKMKKESMAEEMRVLYVALTRAKEKLILVGTVKDAP 901

Query: 673  EKKSNQRTWYDMVYD---------------------------------------SFHNDE 693
            EK     +                                                H   
Sbjct: 902  EKLRQWSSVMAHEDWTLPAHVRRDAKCYLDWIGSSLIRHQNVSHMVEGEVQPAEMIHQHA 961

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK---LFSPIKND 750
               K+    + +  E    E   H      L++ E + +  D +    +        +  
Sbjct: 962  SSWKLSTLLAGDLAEQPLEEQQHHEELLNALQKHEPVSESSDYKDEVYRRLNWSYDYRVA 1021

Query: 751  INEPYILNPSTID--------------------TKGKTNLESLLSDNQTFNRGLIIHKLL 790
                   + S +                           L           RG   H ++
Sbjct: 1022 SVHRSKQSVSELKRQQQLTDAGGSDDLVRESKAPLENRPLFLQEKSLTGAERGTATHAVM 1081

Query: 791  QVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-S 845
            Q +           ++FI S  TK   L   ++   +    +   L++ +     +    
Sbjct: 1082 QQLPLNKAYTLEMVQDFIQSMVTKE--LLTQEQADAVDANDVADFLDSDIAQGIRTARTV 1139

Query: 846  YSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVP---QEI 893
            Y E+  S  ++            + I++ G ID +  +++ + + ++KT +       + 
Sbjct: 1140 YREMPFSLGVSAKEIYDHWEQEDETILVQGIIDCLYETEEGLVLLDFKTDNISDRFQGDF 1199

Query: 894  EH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            E     +   +  QL +Y K ++           L ++       I
Sbjct: 1200 ERAKPFLIDRYRIQLELYAKAIERIVKQPVQHRYLYFLDGGHAVEI 1245


>gi|150014906|ref|YP_001307160.1| recombination helicase AddA [Clostridium beijerinckii NCIMB 8052]
 gi|251764509|sp|A6LPC4|ADDA_CLOB8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|149901371|gb|ABR32204.1| Recombination helicase AddA [Clostridium beijerinckii NCIMB 8052]
          Length = 1245

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 146/980 (14%), Positives = 320/980 (32%), Gaps = 132/980 (13%)

Query: 63   EERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            E  F+ LSS   ++  + +K+ ++        ++I         +L  +       +   
Sbjct: 271  EAMFNSLSSVQFSRLKSIKKDKVSDELSQNTVKKIRDDVKKGISELLNNAYSVNPQQMLR 330

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWI 169
            N    +      + L    +A + + K++  +LDF DL      +L   D     + + I
Sbjct: 331  NIQGSYPYIKKLIELVLEFSARFSKRKRERNILDFNDLEHLCLKILSDYDDENNIIPSSI 390

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                 +  + +L+DE QD++ +Q  +I  ++         +     +F VGD KQSIY F
Sbjct: 391  AMNFKEYFDEVLVDEYQDSNNVQETIINLVSRK-------NDDNPNVFMVGDVKQSIYRF 443

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGL 287
              A+P+  + +         ++      I+L  +FRS  +I+  V+ +F    +     L
Sbjct: 444  RQAKPELFIEKYNTY----DSSNGVNRKIQLYKNFRSRREIIDGVNYIFKEVMSEVVGEL 499

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                   +   +          +    +  +    +  +       +   + ++  +  R
Sbjct: 500  EYTDEEALNLGADFKENKFKDTIVGGPIEVNIIDKSHNETVVED-NEEQEEINNVILEGR 558

Query: 348  RIAYTISNMIGTDTIF--------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
             +A  I  ++               +G+ R ++ +DI++L+R  K+      L   L  +
Sbjct: 559  IVAKRIKELMSKSEDEQIFKVLDKESGEYRPLKYRDIVILLRATKNWS--EPLLDELSAE 616

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              I V  +      + + I+ +++L + + +   D+  + +++SP+  FS ++I  I   
Sbjct: 617  -GIPVYADTGSGYFESIEIRTIISLLKVVDNPMQDIPVISVMRSPIMGFSAEEISDIRLV 675

Query: 460  RHET-----------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
            + +            E      + +++  I+K ++ I  + +  + + + +  +F   + 
Sbjct: 676  KKDNYFYENIKYISEEAYNSINESYSDVLIAKCKYFINSVDKWRNKSIYMAIDEFIWYLY 735

Query: 509  GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562
                          G      L        + E+ S+  L   I+ +             
Sbjct: 736  MDTAYYGYVGAMPNGVLRQANLKILFQRARQFEKTSFKGLFNFINFINKLIKSSGDMGSA 795

Query: 563  RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
            +    N + VRIM++H +KGLE PVVFL   G         K +     L   P      
Sbjct: 796  QVLGENEDVVRIMSIHKSKGLEFPVVFLCGLGKNFNLMDLNKSILYHDELGLGPDFIDIG 855

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN---------- 672
             +          + K +K  T  E  R+LYV  TRA ++LI+                  
Sbjct: 856  KRFSIGTLAKESIKKKMKFETLSEEMRILYVACTRAKEKLIMTGTVGNLEKSAEKWLGSA 915

Query: 673  -------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
                         + KS        +          +     N I KD+   ++ S  + 
Sbjct: 916  SLDYNRISPSEVLKGKSYLDWICMSLCQHRDGSVLSESFGTENLILKDDNSRWKVSFWNK 975

Query: 720  ENTPLEREETIKQLMDEQKIPKK------------------LFSPIKNDINEPYILNPST 761
             +   + +  + +  +  ++                        P K        ++ S 
Sbjct: 976  GDLIDKTKTEVLEQGEGYELTIINNKPYDNYLYEEVDKILSYKYPFKASTTIKSNISVSD 1035

Query: 762  IDTKGK-----------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
            +  +                                 +G  +H +++ I        +  
Sbjct: 1036 LKRRHAEEDYDTEQLYREKVKVVPKFLQEKKGLTPSEKGTAVHFVMKKIDFNRVSSTEEI 1095

Query: 805  ITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAM-----SCDSYSEVSVSGKIN- 856
                     K +   E   ++    I     + +    +         Y E+    +I+ 
Sbjct: 1096 KEQLHELFEKEFLLSEELKVINPTKILSFFRSDLGKKILDLNCRGEKIYREIPFYTEISS 1155

Query: 857  ----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
                         + I + G ID     + +I + +YKT + +    +     +  QL  
Sbjct: 1156 LEVDKTLDNIYKDEKIRLQGIIDCFFEYKGDIILIDYKTDYIMEGHEDEFKEKYRKQLDY 1215

Query: 907  YEKILKDSYPNKSLVCLLIY 926
            Y   +      K +    +Y
Sbjct: 1216 YSDAIFKL-TGKKVKYKYLY 1234


>gi|313622690|gb|EFR93052.1| ATP-dependent nuclease subunit A [Listeria innocua FSL J1-023]
          Length = 1235

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/1023 (14%), Positives = 325/1023 (31%), Gaps = 128/1023 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
            I +D+        S +   V  + E   P           A         +         
Sbjct: 226  IKEDIQLRMNQAKSYLLTAVDYANENNGPAPYLSTLENDLAQINTLSSISWDNWQDVKFG 285

Query: 76   QKF-TPQKNIITQEINKKSPDLKEKLKKSQDE--------FIKIRDRFN------TYKMF 120
             +    ++    +       +  E+ KK +D          +    R          KM 
Sbjct: 286  FESIDFKRIPALKNKADFDEEYVEEAKKFRDAAKKEVKNVLVDWFSREEENYLSDLEKMK 345

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                    L K    ++ E K++  VLDF DL      +L K    + +      +   +
Sbjct: 346  PDIKTLSELVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKNSAPSDVANSYKNQFKEV 405

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            LIDE QDT+++Q  ++  +T       N++ +   LF VGD KQSIY F  AEP   + +
Sbjct: 406  LIDEYQDTNMVQETILLLVT-------NSNDTKGNLFMVGDVKQSIYRFRLAEPTLFMTK 458

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHR 298
             +  Q+    +G     I+L  +FRS  ++L   + +F    +     +  D    +   
Sbjct: 459  YQEYQQDGEGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDEAAELTLG 515

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            +S             +  + + + +  + S         +     + +R IA  I  MI 
Sbjct: 516  ASFPEANNMATELLLIDMKSEEKESEDELSLQ-------ELQKNQVESRAIATKIREMID 568

Query: 359  TDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                  + K    R IQ +DI++L R     P +    +       I    N+     + 
Sbjct: 569  NKFPIYDKKLQQNRPIQYRDIVILARAMTSAPDMEEAMK----IKDIPFYANNSSGYFET 624

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
              +  ++AL + I +   D+    +L+SP+   +E+++ +    + +    ++ +  + +
Sbjct: 625  TEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQXXXXKKKG-YFFDAMLAYKD 683

Query: 476  ----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530
                   +K    I  ++    ++   +       I       +       G +    L 
Sbjct: 684  ITVSDAANKISRFITQLNNWRELSIRENLTALIWQIYQETNFYEFVGGLPGGKQRQANLR 743

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585
               +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE 
Sbjct: 744  ALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEF 803

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            PVV +     +        K  +                      +   + +   +    
Sbjct: 804  PVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAIKQKKSREMIA 863

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDMVY 686
            E  R+LYV +TRA ++LI+        +                    ++  + + D + 
Sbjct: 864  EEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVSNQQETILPAAIRAKAKCYLDWIG 923

Query: 687  DSFHNDERVKKIKLTNSINKDE-----------------WIAYEWSTHHPENTPLEREET 729
            ++       K++     I                       + +  + +        ++ 
Sbjct: 924  NATIRHSHFKELLCEEKIKTLATDMKLQIEIKTKEMFLTDDSEKEKSDNWMENVKAHKQV 983

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG----------------------K 767
              +   + +I + +    K++         S  + K                        
Sbjct: 984  PVKSPYKDEIERFMHYQYKDEEATGIRAKQSVTELKRQFSLQDSWSDTSILKEFQKVSLD 1043

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKNAKLWPAKEYKNL-L 825
                   +       G  +H L+Q +    +   K+ ++     +   +    + K + +
Sbjct: 1044 RPKFLQQNKLSATEIGTAMHTLMQAVPLDDKPTEKDLVSLLQLMREKDILTEAQIKAINV 1103

Query: 826  LSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQ 875
              I    E+ +  T +        EV  S  +            + ++I G +D +   +
Sbjct: 1104 NQIISFFESALGKTVLQKKDKVKREVPFSYLLPAAKLYNQTNLDEHVLIQGVVDSMIEEE 1163

Query: 876  QNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
             +I + +YKT              + +   +  Q+ +Y + ++     K     L +   
Sbjct: 1164 DSIILIDYKTDKIEGRYDNWAAAEKVMKDRYQIQIKLYAEAIQAISGKKVSHAYLYFFDG 1223

Query: 930  PKV 932
              +
Sbjct: 1224 QHI 1226


>gi|153855193|ref|ZP_01996377.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814]
 gi|149752362|gb|EDM62293.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814]
          Length = 1221

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/992 (15%), Positives = 309/992 (31%), Gaps = 128/992 (12%)

Query: 37   LSMETGNPTILKKAQTLQQASQTQCIEERFS--LLSSFFLTQKFT--PQKNIITQEINKK 92
               E      L+  + L   +  + + E FS    +     +  T   +K  + ++I + 
Sbjct: 245  AVYEATLEKDLQVIEELCNRASYKSLAEAFSNVKWARIAANKDKTVSEEKIDLVKKIREM 304

Query: 93   SPDLKEKLKK--SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
               + + +      +   ++ +         +      L +     +EE K+   ++DF 
Sbjct: 305  VKGIVKNMSAQYFYESPEELVEDLRV--CTPAMEELADLVRLFAERFEEQKRAQNMIDFS 362

Query: 151  DLIINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            D+      +L ++     V + I  +  ++   I+IDE QD++LIQ  ++          
Sbjct: 363  DMEQYALRILTQKTENGFVPSKIAEEYQKQFEEIMIDEYQDSNLIQEAIL-------TSV 415

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                S    +F VGD KQSIY F  + P+  L + R           K   I+L  +FRS
Sbjct: 416  SGCRSGRYNIFMVGDVKQSIYRFRLSRPELFLEKFRTY----NIEESKTQRIDLHKNFRS 471

Query: 267  TADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
              ++L   + +F     E   G+  D    +   +              + S  +     
Sbjct: 472  RKEVLESANAIFRQIMTEKLGGIVYDDQAALYPGAEYPENDNVKTEILVMDSDLEILSKE 531

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRK 382
            +              S   + AR IA  I  ++ +  +     G+ R ++  DI++L R 
Sbjct: 532  EDFEEKIP-------SERELEARMIAMRIRELLRSQKVTDKETGELRNVRYSDIVILTRS 584

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
             K       +   + N   I               I  LM   R + ++  D+    +L 
Sbjct: 585  IKG---FADVFTEVLNREGIPTYAGTSEGYFQTQEIGVLMDYLRVLDNRRQDIPLTAVLS 641

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----CGISKFQHVIKYIHELIHIAQFC 498
            S     S++++ +I     +T       +            K Q  +  + +   I  + 
Sbjct: 642  SAFAGLSQEELAEIRCAYPDTAFFESVTKYREQGENADIQLKLQKCLDQMDDFRKIVPYT 701

Query: 499  SPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ- 556
              H+    IL              G +    LD  +      E  SY  L   +  +EQ 
Sbjct: 702  PMHELLWKILETTGYGDYVASMPGGAQRKANLDMLIEKARAYESTSYKGLFHFVRYIEQL 761

Query: 557  ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                           + + VR+MT+H +KGLE PVV +   G +         + +   +
Sbjct: 762  QKYDVDYGEASIEDEHADTVRVMTIHKSKGLEFPVVIVAGMGKRFNMQDARSAVALHAGM 821

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                       ++K  + I   + K     +  E  R+LYV +TRA ++LII    +   
Sbjct: 822  GVGLDAVNLEYRTKIPSIIKKVIQKEEALESLGEELRVLYVALTRAKEKLIITGTLSNPE 881

Query: 673  EK---------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            +K            +   +  +  +    + +    L       +           E+  
Sbjct: 882  DKISDGRVFQGNKRKELSFLQLSHAVTYWDFILPAVLRTEGEPLKLQILHVEDVVKESIE 941

Query: 724  LEREETIKQLMDEQKIPKKLFSP-------------IKNDINEPYILNPSTIDTKGK--- 767
             E +  I + + E     +++ P                + +    L  +  + K +   
Sbjct: 942  EEEKSGISRAVLENWDVNEIYEPKLHDMMKEQFEFIYPYEKSSMRKLKFTVTELKKRAYE 1001

Query: 768  ---------------------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLP--- 797
                                                     RG   H++++++       
Sbjct: 1002 IGLDGGEEEREEEGELLQEEPEVVPMIPQFLQEDEVLAGAARGTAYHRVMELLDMKGMPE 1061

Query: 798  -EHKRKNFITSYCTKNAKLWPAKEYKNLLLS----------ITRLLENPMMTTAMSCD-- 844
                      ++          +  +  +            I +  ++ +       D  
Sbjct: 1062 FTEDTAGEKENWKKYFMDWLDDQVRRGRIEEDAARCICWEDILQFAKSGIGRRLREADGK 1121

Query: 845  --SYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
               + E      I+           + I++ G ID        + + +YKT     +  E
Sbjct: 1122 QRLWREQPFVLGIDARELYPEEEDGELILVQGIIDAYFEEPDGLVVLDYKTDKV--RRKE 1179

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             +   +  QL  Y K L+     K +   +IY
Sbjct: 1180 ELAERYQEQLRYYAKALEQM-TGKKVKEKIIY 1210


>gi|158321312|ref|YP_001513819.1| recombination helicase AddA [Alkaliphilus oremlandii OhILAs]
 gi|251764496|sp|A8MJ41|ADDA_ALKOO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|158141511|gb|ABW19823.1| Recombination helicase AddA [Alkaliphilus oremlandii OhILAs]
          Length = 1197

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/1016 (15%), Positives = 323/1016 (31%), Gaps = 125/1016 (12%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQ--TQCIEE 64
             I K +  L    +  +    ++++E G P        + L + + L  + +       E
Sbjct: 212  TIKKRMGILLKGAMDLLEIAQTIALEPGGPDVYEEAILSDLDQIKELYHSLENPITDFYE 271

Query: 65   RFSLLSSFFLT--QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            + + ++   L   +   P      +++  K+ D+ + ++++           +  +++  
Sbjct: 272  QLNCINFIRLKTSKDSDPILKEECKDLRDKAKDIVKDIRENIFNVSPEEYVEDLNRLYPL 331

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                  L       Y E K    ++DF DL      +L     +        ++  +I +
Sbjct: 332  MDYLYRLVIGFTERYTEKKTDKGIVDFNDLEHFALRILANDLAAQE----YREKFEYIFV 387

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD++++Q  +I+S+  +             LF VGD KQSIY F  A+P   + +  
Sbjct: 388  DEYQDSNIVQETLIQSIKRED-----------NLFMVGDVKQSIYRFRLADPTLFIEKYE 436

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                   +       I+L  +FRS   +L  V+ +F    + +    D          R 
Sbjct: 437  TFGTEEGHIN---RRIDLAKNFRSRGQVLNGVNYIFKHMMSKELGEIDYDE-------RA 486

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA-SILARRIAYTISNMIGTD- 360
                  +         +     +        +   QE +   + AR +A  I  ++  + 
Sbjct: 487  ALYQGTEFEPIQDPSIEINLIEKNMEIDEEMEEELQELADIEVEARIVAKRIKALLNEEI 546

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                    R I+ KDI+VL+R    T         +     I    +      + + +  
Sbjct: 547  YDPRVEGYRKIEYKDIVVLLRT---TQNWAQSFLEVFVREGIPAYADANTGYFEAIEVNM 603

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE---YIQKFANCG 477
             + L R I ++  D+  + +++SP+ +F+ +++  I               Y+++  +  
Sbjct: 604  FLNLLRVIDNKRQDIPLLSVMRSPIGDFTTEELIHIRVNDKTGTYYDAIEKYVEEKTDDL 663

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFT 536
              K    I+ +++  + A++     F   +               G +    L    +  
Sbjct: 664  KYKLVSFIEKLNQWANDARYIKIDQFIWKLFMDTGYYYYVGAMPGGLQRQANLRVLFDRA 723

Query: 537  LRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
             + E+ S   L   I  +E+           +    N N VRIM++H +KGLE PVV   
Sbjct: 724  NQFEKTSIKGLFNFIKFIEKLQSSKGDMGAAKILGENDNVVRIMSIHKSKGLEFPVVITA 783

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
              G           + +   L   P       ++         +   +K  +  E  R+L
Sbjct: 784  GMGKNFNLRDTSADVLLHKDLGLGPKFTDPNLRTYRDTIAKLAMKDQIKIESLSEEMRIL 843

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQR------------TWYDMVYDSFHNDERVKKIK 699
            YV  TR  D+LI+        ++                  + D +  +       + ++
Sbjct: 844  YVAFTRPKDKLIVVGSIRNIEKQVKKWSKADNVYSLMNAKNYLDWIGTALVKHPDGQALR 903

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQL-------------------------- 733
                +  D        +    N    +   +++                           
Sbjct: 904  ELGGLGFDAASDGMEDSEWTINILGRQVIVLEEQDKVLKEEDYREKLLYFNREDFSSGGY 963

Query: 734  ---MDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----------------GKTNLESLL 774
                +E +          + +  P  L+ S I                            
Sbjct: 964  TEYKEEIENRLNWKYDHPHSVQIPSKLSVSDIKKAHINEIDVIAHQIPILVKSPKFMEGK 1023

Query: 775  SDNQTFNRGLIIHKLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITR 830
            +      RG +IH +LQ +       E   +  I     +   L   +E K +    I  
Sbjct: 1024 TTFTAAERGTVIHFVLQHLDLNKVGSEEDIREQIHWMVARE--LITEEESKVVDTKKILN 1081

Query: 831  LLENPMMTTA-MSCDSYSEVSV----------SGKINCPKKDIIISGRIDQISISQQNIF 879
               +P+      +   Y E              G  +  +  +++ G ID     +  + 
Sbjct: 1082 YFYSPIGERMRKAKKVYRESPFIIEKSAGEVIEGLSDDIEDKLLVQGIIDCYFEEKDGLI 1141

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            + +YK    +   I  +   +  QLS+Y + L+     +     L      +   +
Sbjct: 1142 LIDYKNDIVLNGNIAAVVARYELQLSLYREALERITGREVKETYLYLFDVDQGVRL 1197


>gi|182417613|ref|ZP_02948934.1| recombination helicase AddA [Clostridium butyricum 5521]
 gi|237669499|ref|ZP_04529479.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str. BoNT
            E BL5262]
 gi|182378532|gb|EDT76062.1| recombination helicase AddA [Clostridium butyricum 5521]
 gi|237654943|gb|EEP52503.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str. BoNT
            E BL5262]
          Length = 1252

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 163/999 (16%), Positives = 320/999 (32%), Gaps = 143/999 (14%)

Query: 63   EERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            ++ +S L S    +  + +K+ ++        + I         +L  +           
Sbjct: 271  DDIYSSLCSISFGRLKSIKKDKVSDENAQNTVKSIRDDIKKKISELINNTFSVTPEEMLI 330

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWI 169
            N    + +      +       + + KK+  +LDF DL      +L  +D       +  
Sbjct: 331  NIKGAYPTIKKLTEIVLEFGEKFSQKKKEKNILDFNDLEHLCLKILSDKDENGNIIPSKT 390

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              +     + +L+DE QD++ +Q  +I  ++               +F VGD KQSIY F
Sbjct: 391  AIEFKNLFDEVLVDEYQDSNNVQETIIELVSR-------RKDEFPNVFMVGDVKQSIYRF 443

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGL 287
              A+P+  + +        T        I+L  +FRS  +++  V+ +F     E    L
Sbjct: 444  RQAKPELFMEKYINY----TLEESNNRKIQLYKNFRSRKEVIDGVNYIFKEIMSETVGEL 499

Query: 288  SEDSTTTIRHRSSRIG-------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                   +   +S            G +++     S  +S  N ++     + +   +  
Sbjct: 500  EYTDEEALNLGASYENSEDENVILGGPIEVNIIEKSIEESDLNKEKLDEEDFENEEIEGV 559

Query: 341  SASILARRIAYTISNMIG-------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
            +     + +A  I  ++               G+ R I+ KDI++L+R  K+      L 
Sbjct: 560  NLEG--KIVAKRIKELMTTTGNNVFKVLDKETGEYRPIKYKDIVILLRATKNWS--ESLL 615

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
              L  +  I    +      + + I+ +M+L R I +   D+  + +LKSP+  FS +D+
Sbjct: 616  DELGQE-GIPAYADTGSGYFESIEIRTIMSLLRVIDNPMQDVPVIAVLKSPIMGFSAEDL 674

Query: 454  FKICTQRHETETVYEY-------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
              I  +  E              I   +   I++ +  ++ +    + A +    +F   
Sbjct: 675  SIIRLKNKEKYFYENIADIAEGNICDISEELITRCKGFLEKLEIWRNKAIYMPIDEFIWY 734

Query: 507  ILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPT 560
            +               G      L        + EQ S+  L   I+ +           
Sbjct: 735  LYMDTAYYGYVGAMPNGVLRQANLKILFQRAKQFEQTSFKGLFNFINFINKLTKSSGDMG 794

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
              +    N + VRIM++H +KGLE PVVFL  TG Q       K +     L   P    
Sbjct: 795  SAKILGENEDVVRIMSIHKSKGLEFPVVFLCGTGKQFNLMDLNKNILYHDELGFGPDFVD 854

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-- 678
               +          + K +K  T  E  R+LYV  TRA ++LII    N   +       
Sbjct: 855  LEKRVSIGTIAKEAIKKKMKLETLSEEVRILYVACTRAKEKLIITGTVNNIQKSIEKWVS 914

Query: 679  -----------------RTWYDMVYDSFHNDERVKKIKLTNSINKD------------EW 709
                             +++ D +  S       K ++   +++ +             W
Sbjct: 915  SASLDYNLILPSEILKGKSYLDWIGMSLCQHNDGKVLREKIAVSNEISKDDNSKWDIKLW 974

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKK---------LFSPIKNDINEPYILNPS 760
               +   ++ +    E +E    +++E+                 P+K        ++ S
Sbjct: 975  KRSDIVVNNEDGKLEEEKEVKLSILEEEYDKDVYGEVDKILSYKYPLKESTKLKSNISVS 1034

Query: 761  TIDTKGK-------------------------TNLESLLSDNQTFNRGLIIHKLLQVIFT 795
             +  +                                         +G  +H +++ I  
Sbjct: 1035 DLKKRNAEFIDQHVESINIEEVESKNKRTIITPKFLQEEKGLTAAEKGTAVHFVMKKIDL 1094

Query: 796  L---PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT---TAMSCD--SYS 847
                  H+ K+ I  Y  +N  +   +        I    ++ +              Y 
Sbjct: 1095 DKVSSIHEIKDQI-QYLYENDFILEEEMKAVNPSKILNFFKSDLGKMMTELHKEGKKIYR 1153

Query: 848  EVSVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            E+    +I               + + + G ID          + +YKT +        +
Sbjct: 1154 ELPFYTEISSVNIDNTLSEEYENEKVRLQGIIDCFFEYNGESILLDYKTDYVSKDNEAEL 1213

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
               +I QL  Y   +      K     L      KV  I
Sbjct: 1214 QKKYIKQLDYYSDAVFKITGKKVSKRYLYSFYLEKVIEI 1252


>gi|321314788|ref|YP_004207075.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis BSn5]
 gi|320021062|gb|ADV96048.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis BSn5]
          Length = 1232

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 154/1037 (14%), Positives = 330/1037 (31%), Gaps = 143/1037 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS--- 70
            + +D+  +       + + + L+   G P          L Q  +    ++ FS L    
Sbjct: 222  VKEDIAMVLNGAKEKLLRALELTKAPGGPAPRADNFLDDLAQIDELIQHQDDFSELYKRV 281

Query: 71   -SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF-------IKIRDRFNTYKMFKS 122
             +    +    + +     +  ++ DL+   KK  ++           +   +  +M   
Sbjct: 282  PAVSFKRAKAVKGDEFDPALLDEATDLRNGAKKLLEKLKNDYFTRSPEQHLKSLAEMKPV 341

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-----KRDVSAWIRYKIDQEI 177
                + L       +E AK++  ++DF DL      +L           +       ++ 
Sbjct: 342  IETLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLAILTAENDKGESEPSEAARFYQEQF 401

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            + +L+DE QDT+L+Q  +++ +T       +       LF VGD KQSIY F  AEP   
Sbjct: 402  HEVLVDEYQDTNLVQESILQLVT-------SGPEETGNLFMVGDVKQSIYRFRLAEPLLF 454

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295
            L + +   +     G     I+L  +FRS ADIL   + +F      +   +  D    +
Sbjct: 455  LSKYKRFTESGEGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAEL 511

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            +  ++      T      + +  D+  + +            +  +    A+ IA  I  
Sbjct: 512  KLGAAYPDNDETETELLLIDNAEDTDASEE----------AEELETVQFEAKAIAKEIRK 561

Query: 356  MIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +I +     +GK    R IQ +DI++L+R     P I    R       I V  N     
Sbjct: 562  LISSPFKVYDGKTKTHRNIQYRDIVILLRSMPWAPQIMEELRA----QGIPVYANLTSGY 617

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467
             + + +   +++ + I +   D+    +L+SP+    E+++  I  +  +         Y
Sbjct: 618  FEAVEVAVALSVLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDY 677

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526
                   +    K      ++ +    ++  S  +    +    K          G +  
Sbjct: 678  LAAGDRNDELYQKLNTFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQ 737

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581
              L    +   + E  ++  L   +  +E+           RA S   + VR+MT+H++K
Sbjct: 738  ANLRVLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSK 797

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVVF    G         K   +   L           +       +  + K +++
Sbjct: 798  GLEFPVVFAAGLGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRR 857

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDERVKKI 698
                E  R+LYV +TRA ++L +        ++ +      +  D +   F   +    +
Sbjct: 858  ELLSEELRVLYVALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYL 917

Query: 699  KLTNSINK-----------------------------------DEWIAYEWSTHHPENTP 723
                                                       D+ +             
Sbjct: 918  DFIGPALARHRDLEDLAGVPAHADISDHPARFAVQMIHSHDLLDDDLEERMEEKSERLEA 977

Query: 724  LEREETIK---QLMDEQKIPKKLFSPIKNDINEPYILNPSTI------------------ 762
            + R E +       ++ +       P           + S I                  
Sbjct: 978  IRRGEPVPGSFAFDEKAREQLSWTYPHHEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKP 1037

Query: 763  ---DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLW 816
                   +     +        +G  +H ++Q I         + +  +     K   L 
Sbjct: 1038 ADGSILFRRPAFMMKKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKE--LL 1095

Query: 817  PAKEYKNL-LLSITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIIS 865
              ++   + +  I +     +    +       E+  S  +             + +++ 
Sbjct: 1096 TEEQKDAIDIEEIVQFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAQEADEPLLVQ 1155

Query: 866  GRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            G ID +  ++  +++ +YK+                 +   +  Q+ +Y K ++     K
Sbjct: 1156 GIIDCLYETEDGLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTK 1215

Query: 919  SLVCLLIYVSEPKVFII 935
               C L +     +  +
Sbjct: 1216 VKGCALYFFDGGHILTL 1232


>gi|300856480|ref|YP_003781464.1| putative ATP-dependent exonuclease [Clostridium ljungdahlii DSM
            13528]
 gi|300436595|gb|ADK16362.1| predicted ATP-dependent exonuclease [Clostridium ljungdahlii DSM
            13528]
          Length = 1240

 Score =  388 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 172/1014 (16%), Positives = 334/1014 (32%), Gaps = 141/1014 (13%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
            +E    T  K  + +++       EE           +  T +     +E+ +++ ++++
Sbjct: 251  LEHYADTFKKDYENIKELLLLNSWEELKEKFLQLSFDKLSTKRVKDEVKEVKERAKNVRD 310

Query: 99   KLKKSQDEFIKIRDRF------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
            ++KK  +   +           N  +++      ++L    + +Y   K++  +LDF D+
Sbjct: 311  EVKKKLNSIKEDIFLGSDNMYKNMQEVYPMMKCLVSLVIEFDKNYSLKKRERGILDFSDI 370

Query: 153  IINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
                 ++L  RD     V +    +  +    I IDE QD++ +Q  ++  ++       
Sbjct: 371  EHFCLEILTDRDEEGNIVPSEAALEYRRYFEEIFIDEYQDSNEVQEVIMNMISRK----- 425

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
               S    LF VGD KQSIY F  ++P+  L++     ++ T        I+L  +FRS 
Sbjct: 426  ---SKDSNLFMVGDVKQSIYRFRQSKPELFLQKYNSYSEKKTAEN---RKIKLSENFRSR 479

Query: 268  ADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
             +I+   + +F          L      +++  +      G      +V      + + +
Sbjct: 480  KEIIEGTNYLFKQIMCREVGELDYTDEESLKSSADYENSSGNYSRDIEVNIIDKKEESEE 539

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--------NGKKRVIQAKDIL 377
             +      D++       + AR +A  IS +I                   R +  KDI+
Sbjct: 540  IQENEEVLDNV------QVEARLVAEKISELINGKEEVEPLKVYDKNTKSYRNVMYKDIV 593

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L+R  ++   I        N  ++ V  +      +++ +K ++++   I +   D+  
Sbjct: 594  ILMRATQNWAPI---FVEELNSLEVPVFADISAGYFENIEVKTIISVLEIIDNPLQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-------------KFQHV 484
            V +L+SP+ +FS +++  +     +            N   S             K    
Sbjct: 651  VAVLRSPIESFSPEELIDLRMVDRKMHFYDILKIISENDPESDISLKYVENGLKYKVSEF 710

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNS 543
            +K ++      ++    +F   +               G +    L        + E++S
Sbjct: 711  LKRLNNWRKKVKYMPIDEFIWHLYTETGYYGFIGAMPGGIQRQANLRMLFERAKQYEKSS 770

Query: 544  YSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            Y  L   I+ +             +    N + VRIM+VH +KGLE PVV L  TG +  
Sbjct: 771  YKGLFNFINFMNKLKNSSGDLGSAKILGENEDVVRIMSVHKSKGLEFPVVILSGTGKKFN 830

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                 K +     L   P              +   L K LK  T  E  R+LYV  TRA
Sbjct: 831  LMDMSKGVLFHEKLGLGPDYVNVKRHICYPTVMKQVLRKKLKVETLSEEMRILYVAFTRA 890

Query: 659  SDQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDSFHNDERVKKIK 699
             ++LII    N   +                        R + D +  +       K I+
Sbjct: 891  KEKLIITGMVNNIEKTTQKWCECASYKGNKLPEYSLISARNFLDWIGAALAKHPCGKSIR 950

Query: 700  LTNSINK---------DEWIAYEWSTHHPENTPLERE--------------ETIKQLMDE 736
              + I             W    +     +    E+E              E   Q MD+
Sbjct: 951  EISKIEDNLNLVIGDSSRWKINIYKKDDFKTVSQEKEDVDILGKIEELNLTEYDGQYMDK 1010

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTID------------------TKGKTNLESLLSDNQ 778
                       +     P   + S +                      K           
Sbjct: 1011 VDRRLNWKYKYEEACKIPAKFSVSELKRRFDLNDIEDSANLVELVQLKKPLFLREKKGMT 1070

Query: 779  TFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLEN 834
               RG ++H +LQ I         + K  +     +       +E K++ L  I +   +
Sbjct: 1071 AAERGTLLHLILQHIDIKKVNSYDEIKEQVGKLVQRE--FIREEEVKSIPLGKILKFFNS 1128

Query: 835  PMMTTAM-SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQISISQQNIFIF 881
             + +    + + Y E     +I                + III G ID        + + 
Sbjct: 1129 EIGSRMKEAENIYRETPFYMEIESNELYKELPDKIYKDEKIIIQGIIDCYFEENGELVLI 1188

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            +YKT      +I+ I   +  Q+  Y + L+     K     L       +  +
Sbjct: 1189 DYKT--DYVDDIDDIKDKYKNQIYYYARALEKLTGKKVKNKYLYLFFNNSLVEM 1240


>gi|296332487|ref|ZP_06874948.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            spizizenii ATCC 6633]
 gi|305673768|ref|YP_003865440.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp.
            spizizenii str. W23]
 gi|296150405|gb|EFG91293.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            spizizenii ATCC 6633]
 gi|305412012|gb|ADM37131.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp.
            spizizenii str. W23]
          Length = 1234

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/1026 (14%), Positives = 333/1026 (32%), Gaps = 141/1026 (13%)

Query: 27   QVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS----SFFLTQKFTP 80
                + + + L+   G P          L Q  +    ++ F+ L     +    +    
Sbjct: 233  AKEKLQRALELTKVPGGPAPRADNFLDDLAQIDELIQHQDDFTELYKRVPAVSFKRVKAV 292

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKSTLASLTLAKYL 133
            + +     + +++ DL+   KK  ++        +          M       + L    
Sbjct: 293  KGDEFDPTLLEEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLADMKPVIETLVRLVISY 352

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDT 188
               +E AK++  ++DF DL      +L   +       +       ++ + +L+DE QDT
Sbjct: 353  GKRFEAAKQEKSIIDFSDLEHYCLSILTAENETGEREPSEAARFYQEQFHEVLVDEYQDT 412

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            +L+Q  +++ +T       +       LF VGD KQSIY F  AEP   L + +   +  
Sbjct: 413  NLVQESILQLVT-------SGPEETGNLFMVGDVKQSIYRFRLAEPLLFLSKYKRFTESG 465

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVG 306
               G     I+L  +FRS ADIL   + +F      +   +  D    ++  ++      
Sbjct: 466  EGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAELKLGAAYPDNDE 522

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            T      + +  ++    +            +  +    A+ IA  I  +I +     +G
Sbjct: 523  TETELLLIDNAEETDAGEE----------AEELETVQFEAKAIAKEIRKLISSPFKVYDG 572

Query: 367  K---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
            K    R IQ +DI++L+R     P I    R       I V  N      + + +   ++
Sbjct: 573  KTKTHRNIQYRDIVILLRSMPWAPQIMEELRA----QGIPVYANLTSGYFEAVEVAVALS 628

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----YEYIQKFANCGI 478
            + + I +   D+    +L+SP+    E+++  I  +  +         Y       +   
Sbjct: 629  VLKVIDNPYQDIPLASVLRSPIVGADENELSLIRLENKKAPYYEAMKDYLAAGDRNDELY 688

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTL 537
             K +    ++ +    ++  S  +    +    K          G +    L    +   
Sbjct: 689  QKLETFYGHLQKWRAFSKNHSVSELIWEVYRDTKYMDYVGGMPGGKQRQANLRVLYDRAR 748

Query: 538  RNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            + E  ++  L   +  +E+           RA S   + VR+MT+H++KGLE PVVF   
Sbjct: 749  QYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEFPVVFAAG 808

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
             G         K   +   L           +       +  + K +++    E  R+LY
Sbjct: 809  LGRNFNMMDLNKSYLLDKELGFGTKYIHPQLRISYPTLPLIAMKKKMRRELLSEELRVLY 868

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDSFHNDE 693
            V +TRA ++L +        ++ +                     +T+ D +  +     
Sbjct: 869  VALTRAKEKLFLIGSCKDHQKQLAKWQASASQTDWLLPEFDRYQAKTYLDFIGPALARHR 928

Query: 694  RVKKIKLTNSINKDEWIAYE--------WSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             ++ +    +    +   +          S    ++   ER E   + ++  +  + +  
Sbjct: 929  DMEVLAENGAATHADISGHPARFAVRMIHSYDLLDDDLEERTEEKSERLEAIRKGEPVPG 988

Query: 746  PIKNDINEPYILN-------------------------------------PSTIDTKGKT 768
                D      L+                                     P+      + 
Sbjct: 989  TFAFDEKAREQLSWTYPHHEVTQIRTKQSVSEIKRKREYEDEYSGRAPVKPADGSILYRR 1048

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK-LWPAKEYKNL-LL 826
                +        +G  +H ++Q I        +    +      K L   ++   + + 
Sbjct: 1049 PAFMMKKGLTAAEKGTAMHTVMQHIPLTHIPTIEEAEQTVHKLYEKELLTEEQKTAIDIE 1108

Query: 827  SITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIISGRIDQISISQQ 876
             I +     +    +       EV  S  +             + +++ G ID +  ++ 
Sbjct: 1109 EIVQFFHTEIGGQLIGAKWKDREVPFSLALPAKEIYPDAQEADEPLLVQGIIDCLYETED 1168

Query: 877  NIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
             +++ +YK+                 +   +  Q+ +Y K ++     K   C L +   
Sbjct: 1169 GLYLLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTKVKGCALYFFDG 1228

Query: 930  PKVFII 935
              +  +
Sbjct: 1229 GHILTL 1234


>gi|297616711|ref|YP_003701870.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM 12680]
 gi|297144548|gb|ADI01305.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM 12680]
          Length = 1250

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 157/1052 (14%), Positives = 324/1052 (30%), Gaps = 145/1052 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEER 65
            E + + +       + +I + ++L ++ G P          LK   +L    + +   E 
Sbjct: 214  EELKQGIGLEIGGCIEEIKRAIALCLKPGGPVAYIDNLKQDLKMLGSLSSLCK-RSWAEL 272

Query: 66   FSLLSSFFLTQKFTPQKN--------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                           +K            + I  +     + ++K+       +   +  
Sbjct: 273  GEGFDGASFAGLKPLRKKDGIRSELQEQVKTIRDQVKKRIDSIRKTVFSRTPEQQANDMR 332

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV------SAWIRY 171
            +M     A + L       Y  AK++  VLDF DL      +L + D        + I  
Sbjct: 333  RMAPVVEALIGLVSEFGERYRGAKERRSVLDFSDLEHYCLRILSREDEGCDRFTPSSIAL 392

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            +  +    IL+DE QD + +Q  ++  +++         +   ++F VGD KQSIY F  
Sbjct: 393  EFRERFVEILVDEYQDINAVQEAILNLISK-------QEAKRSSIFMVGDVKQSIYRFRL 445

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSE 289
            AEP   L +     ++A N       I+L  ++RS   ++  V+ +F          +  
Sbjct: 446  AEPGLFLEKYHRYPRQADNGE---RRIDLKQNYRSRDRVIEAVNYLFGQIMAPGVAEMKY 502

Query: 290  DSTTTIRHRSSRIGQVGTVQL---------WEQVVSQHDSQCNPQQESWTSYF------- 333
               + +   S          L          +      +   +  +E W           
Sbjct: 503  GGESELVPGSVYPDSDDGKDLGTEPVQLVIVDAAGDGVEPGDDSLEEQWDDDGVFSGSEE 562

Query: 334  --DSLPQESSASILARRIAYTISNMIGTDT---IFSNGKKRVIQAKDILVLVRKRKDTPL 388
              D+    + A + AR +A  I  +            G  R +  +DI VL+R    T  
Sbjct: 563  QGDNRVLFNQAQLEARLVAAEIERLRKEGVKVWDREAGDYRPLCFRDIAVLLRT---TRG 619

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                         I           D + +K +++L   I +   D+  + +L+SP+  F
Sbjct: 620  AAQAFVEELRRAGIPAYAQVDTGYFDAIEVKTVLSLLNIIDNPRQDIPLLAVLRSPIGGF 679

Query: 449  SEDDIFKICTQRHETETVYEYIQ---KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
            +  ++ +I     E       ++   K  N    K Q   + +     +A+     +   
Sbjct: 680  NAAELAEIRVHLPEGSFYEAAVRVAGKGDNPVGKKLQEFFRKLEGWRTVARRRGTKELLW 739

Query: 506  LILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +               G +    L     +  R E +S++ L   +  +E+        
Sbjct: 740  NLFEDTGYYDYAGAMPGGKQRQANLRLLETWAARYENSSFTGLFHFLRFVERMQENGWEM 799

Query: 565  -----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                  + N + VR++++H +KGLE P+VF+   G          K+ +   L       
Sbjct: 800  GTAAVTAENDDAVRVVSIHRSKGLEFPLVFVAGLGRMFNFADLRGKVLVHRKLGIGLEFV 859

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK---- 675
                           +   +++    E  RLLYV MTRA ++L++       N+      
Sbjct: 860  DRDLAVTYPTLAKLAVKNRIRREMLAEEMRLLYVAMTRAREKLVLVGTVKNLNKSAGEWC 919

Query: 676  ---------------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP- 719
                           +  R + D +  +        ++         +     +      
Sbjct: 920  RAASTGADTLPEAVLARARCYLDWIAPAAVRQAGGLELWQRAGEENGQQEGEVYFDVRVV 979

Query: 720  -ENTPLEREETIKQLMDEQ------------------KIPKKLFSPIKNDINEPYILNPS 760
              +   ER  T  +  D+                   ++ ++L      +         S
Sbjct: 980  KASELEERAATAPRPKDDDSLFTTGEGVELAAGDGLGEVERRLSWRYPWEKALGKKAKFS 1039

Query: 761  TIDTKGK----------------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
              + +                                      RG I+H +LQ +     
Sbjct: 1040 VTEARNIFAASGEWYGPEEEMRRTDFVSHPRFYRKTGGITAAERGSIMHLVLQHVDPAKA 1099

Query: 799  HKRKNFITSYCTKNAK-LWPAKEYKNL-LLSITRLLENPMMTTAMSCD--SYSEVSVSGK 854
                          A+ +    + + + + +I  L    +    +        E+  S  
Sbjct: 1100 GDVTGVKRELEEMVAREILGPDQIEVVDIDAIAGLFAGELGRRIVRAGEAVLRELPFSLS 1159

Query: 855  INCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
            +              + +++ G ID +        + +YKT    P  +E +   +  Q+
Sbjct: 1160 LPAEELYSGELCGYGERVLVQGVIDCLLDEGDGFVLIDYKTDELRPGRVEELVAKYRPQV 1219

Query: 905  SIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935
             +Y   ++     K +    L ++S      I
Sbjct: 1220 DLYALAVERIL-KKPVKKKYLYFLSGGLAVKI 1250


>gi|317128676|ref|YP_004094958.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522]
 gi|315473624|gb|ADU30227.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522]
          Length = 1242

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 164/1018 (16%), Positives = 328/1018 (32%), Gaps = 134/1018 (13%)

Query: 31   INKYVSLSMETGNP-----TILKKAQTLQQASQTQCIEERFSLLSS-FFLTQKFTPQKNI 84
            I K + L+ E   P     T  +    +    +    E+ ++   S  F T K   +K++
Sbjct: 237  IEKAMDLTREPNGPAKYSETFEEDILYIDSLIRASTWEQLYARFQSGSFKTIKRITKKDL 296

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDR-------FNTYKMFKSTLASLTLAKYLNAHY 137
            + +E+ +++  L+++ KK  +                   +M  S      L K  +  Y
Sbjct: 297  VDEELKERAKSLRDQAKKQVEAIKNELFTKEPDSFLEELKEMAPSVKTIARLIKAFSERY 356

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQ 192
             EAKK+N VLDF DL      +L                +       +LIDE QDT+L+Q
Sbjct: 357  LEAKKENAVLDFNDLEHFCLAILADESEDGQWSPTRAASEFQDHFVEVLIDEYQDTNLVQ 416

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
              ++  L           S     F VGD KQSIY F  AEP   L + +  +K      
Sbjct: 417  ETIVSLL-----------SKGNNRFMVGDVKQSIYRFRLAEPTLFLNKYKEYKK---EGD 462

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
             +   I+L  +FRS  +IL   + +F    +      +  +    R      +    L  
Sbjct: 463  CEGWRIDLAKNFRSRCEILDATNYLFRQMMDETVGEINYDSDAELRLGNEDYLDQDGLET 522

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KR 369
            +V   +  +    ++   +         ++ +  R I   I  +I       +      R
Sbjct: 523  EVAIINKGKPITVEDPGDTQVTLEEDLETSQMETRFIIKEIKRLIKEKYPVYDKNLKATR 582

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  +DI++L+R       +            I +  +      D + ++ +M+L + I 
Sbjct: 583  PVTYRDIVILMRSMPWAATMMDE----CKQEGIPIYADLSTGYFDAVEVRVMMSLLKVID 638

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----YIQKFANCGISKFQHVI 485
            +   D++   +L+SP++ F+E  +  +     +            Q        K +H +
Sbjct: 639  NPYQDVAVASVLRSPIYQFNEQQLAHVRIMERDGAYYDAIKKTAEQSPEKEISEKARHFL 698

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSY 544
             ++      A+  +  D    +               G +    L    +     E  S+
Sbjct: 699  LHLERWRTKARSGALSDLIWELYRETGYYDYVGGMPGGKQRQANLRALYDRARAYEATSF 758

Query: 545  SSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              L   +  +E+           RA     + VRIMT+H +KGLE P+VF+     +   
Sbjct: 759  RGLFRFLHFVERMQERGDDLGAARALGEQEDVVRIMTIHKSKGLEFPIVFVAGANKKFNM 818

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                    +   L           +    +     + K +   +  E  R+LYV +TRA 
Sbjct: 819  QDLRGSYLLHKDLGFGSKYIDPKLRVAYPSLPQLAIKKRMHLESLAEEMRVLYVALTRAK 878

Query: 660  DQLIICKHSNTSNEK-------------------KSNQRTWYDMVYDSFHNDERVKKIKL 700
            ++L +    N + +                    +    ++ D +  +      V++   
Sbjct: 879  EKLYLIGTVNEAEKSLHKWKEFMNEKEWLLPAVDRQKGNSYLDWIGPAVLRHHAVQRSLF 938

Query: 701  TNS------INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK------------- 741
                         +   +  S    E+     EE I      + +               
Sbjct: 939  GEEQSNSMEEVHADPSKWFVSIIEQEDLKFSTEEKIISDTGMKSLIANFEKVPIQSSEIN 998

Query: 742  ------KLFSPIKNDINEPYILNPSTI-------------------DTKGKTNLESLLSD 776
                  +      +          S +                                 
Sbjct: 999  DIINRLEWRYRYNSAAVFQSKQTVSDLKRQQYKDEYSGSFYSDGFQSKYADRPKFLQKEA 1058

Query: 777  NQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
              +  RG +IH ++Q   +  +P     N    Y  +N  L   +     +  +    E+
Sbjct: 1059 LSSAERGTVIHAVMQHISLSQIPSEDDINKHLFYMVENELLTKEQANAVNIEEVLLFFES 1118

Query: 835  PMMTTAM-SCDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFIFEY 883
            P+    + +     E+  S  I+            ++ ++I G ID +   +  + + +Y
Sbjct: 1119 PIGKRLINAEWVEREIPFSIGIDASNAYTDWGDSEEETVLIQGVIDCVFKDELGVVLLDY 1178

Query: 884  KTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVF 933
            KT            +    +   +  Q+ +Y + ++ S+ NK +    L +     + 
Sbjct: 1179 KTDAIENRFSGGFQEAYATLKERYNTQMKLYIQAVEMSW-NKPVDEAHLYFFDGGYLL 1235


>gi|167761630|ref|ZP_02433757.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704]
 gi|167660773|gb|EDS04903.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704]
          Length = 1200

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 159/973 (16%), Positives = 314/973 (32%), Gaps = 111/973 (11%)

Query: 37   LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL----TQKFTPQKNIITQEINKK 92
               E    + L+  + L++      + E+ + +    L     +  + +K    + I ++
Sbjct: 245  AVYEAALRSDLRIIEELRETRSFTELGEKMNSVKWMRLAANRDKAVSEEKAAKVKAIREE 304

Query: 93   SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
               L + L              +      +     +L +     +EE K+   ++DF D+
Sbjct: 305  VKGLVKDLAGQYFCQDAPGILEDLQICRPAMEELASLVREFAERFEEKKRSKNMIDFSDM 364

Query: 153  IINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
                  +L  +     V + I  +  Q+   I+IDE QD++LIQ  ++ S++        
Sbjct: 365  EQYALRILTDKSDEGFVPSVIAREYQQQFLEIMIDEYQDSNLIQEAILTSIS-------T 417

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                   +F VGD KQSIY F  + P+  + +             K   I+L  +FRS  
Sbjct: 418  VSEGRYNIFMVGDVKQSIYRFRLSRPELFMEKFNTYDTD----DSKTQRIDLHKNFRSRR 473

Query: 269  DILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            ++L  V+ +F         G+  D    +   +              + S  D+      
Sbjct: 474  EVLEGVNYIFRQIMTRELGGIVYDDQAALYVGADYKDGENMETEVLVIDSNVDA------ 527

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRK 384
              W     ++   +   + AR IA  I  +I    +     G+ R+ +  DI++L R  K
Sbjct: 528  --WEDEAQAVRGITERELEARAIAGRIRELIHHHQVTDKKTGEFRLARYSDIVILTRSIK 585

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                   +   + +   I      R        I  ++   R + +Q  D+    +L SP
Sbjct: 586  G---FADVFTEVLSKEGIPTYAGTREGYFATQEIGVILDYLRVLDNQRQDIPLAAVLASP 642

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS----KFQHVIKYIHELIHIAQFCSP 500
            +   +E+++  I +   E           A         K    +  +     +  +   
Sbjct: 643  IGAMTEEELAIIRSSYKERPFFQAVSDYLAGGEDESIRGKLGRCLGQMEAFRKVVPYTPM 702

Query: 501  HDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--- 556
            H+   ++L              G +    LD         E  SY  L   I  +EQ   
Sbjct: 703  HELLHMVLEKTGYGDYACAMPGGEQRKANLDMLAEKARVFESTSYKGLFHFIRYIEQLQK 762

Query: 557  --YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                           + VRIMT+H +KGLE P+VF+   G +         + +   +  
Sbjct: 763  YDVDYGEASIEDEQSDTVRIMTIHKSKGLEFPIVFVAGMGKRFNMQDARSSVVLHSKMGV 822

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                     ++KS + +   + K     +  E  R+LYV +TRA ++LII        +K
Sbjct: 823  GLDAIHIANRTKSPSLVKKIIQKEEALDSLGEELRVLYVALTRAKEKLIITGTIPNLEKK 882

Query: 675  ------------KSNQRTWYDMVYDSFHNDERVKKIK----LTNSINKDEWIAYEWSTHH 718
                         S   T++D +  +  +      I       + I K+E I        
Sbjct: 883  MPLYEMGITFGRLSKASTYWDWILPAVSSVPPEVPIAVKRIAFDDIVKEEVIEETAGRMT 942

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK----------- 767
                       +      + I ++         +    L  +  + K +           
Sbjct: 943  RAMLEAWNTSQVYDPAMHEAIKEQFGYQYPYAGSGMQKLKFTVSELKKRIYLKDSLGEEL 1002

Query: 768  -----------------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITS 807
                                     +    +RG   H+L++++       E +  + +++
Sbjct: 1003 DETGELLYEEPEVVPLIPRFLKEEEELTGASRGTAYHRLMELLDLAQDYGEAELADAVSA 1062

Query: 808  YCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDS----YSEVSVSGKINC---- 857
            Y  +        +    +    I   L         +       + E      ++     
Sbjct: 1063 YVEEGKM---DADMAACIRHGDILGFLNGGAGRRMKAAARAGTLWREQPFVLGVDAREMY 1119

Query: 858  ----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                  + I++ G ID        + + +YKT        E +   + +QL  Y K L+ 
Sbjct: 1120 PEEQEGELILVQGIIDAYFEESDGLVVLDYKTDQI--YTPEGLIERYHSQLDYYAKALEQ 1177

Query: 914  SYPNKSLVCLLIY 926
               +K +   +IY
Sbjct: 1178 L-THKKVKEKIIY 1189


>gi|291548280|emb|CBL21388.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Ruminococcus sp.
           SR1/5]
          Length = 951

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/950 (15%), Positives = 318/950 (33%), Gaps = 131/950 (13%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + + + D  ++L               T          + L K     ++  K++  V
Sbjct: 13  KALREDAKDNLKELGIRYFYGNLAELTELTEASAPPLEMLVKLTKDFAERFQAKKREKNV 72

Query: 147 LDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           LDF D+     D+L K++   ++      ++ ++ + +L+DE QD++L+Q  +++     
Sbjct: 73  LDFSDMEHFALDILLKKEGETYVPSQAARELSEKYDEVLLDEYQDSNLVQEILMQ----- 127

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   +  + +F VGD KQSIY F  A P+  + + +               I+L  
Sbjct: 128 --TVSGWVNERKNIFMVGDVKQSIYRFRLARPELFMEKYKSYS----LEDSPEQRIDLHK 181

Query: 263 SFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
           +FRS  ++L  V+ +F     E+  G++ D    +   +S           +    + + 
Sbjct: 182 NFRSRPEVLESVNFIFRQIMGEDLGGIAYDEAAALYPGASFPEGQ------DPEFVKTEI 235

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILV 378
               +        D    E+   + A  IA  I +M+G + +     G+ R +Q  DI++
Sbjct: 236 LLVDKYSPLLEEEDEEVTENERELEALAIAGRIRSMVGHERVLDKETGEYRPLQYGDIVI 295

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L+R              + +   I V    R        +  L+   R + +   D+   
Sbjct: 296 LLRSASGWA---ETFGEVLSARGIPVYTASRTGYFSATEVVTLLNYLRILDNPLQDIPMT 352

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------------SKFQHVIK 486
            +L+SP+   + +++ ++     E        +   +                K    + 
Sbjct: 353 GVLRSPIVGCTTEELAELRIAYPEGMIYECVCRFVEDYRKHGSFEENKKILGEKLSCFMD 412

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYS 545
            ++ L   A +   H     +L          +   G +    L+  +   +  E+ SY 
Sbjct: 413 TMNTLRDKAAYTPVHQLILEVLARTGYGDHAKAMPNGEQRNANLNMLVEKAMEYEKTSYR 472

Query: 546 SLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            L   +  ++     Q             + V+IMT+H +KGLE PVVF    G +    
Sbjct: 473 GLFNFVRYIQKLQQYQVDYGEVNLSGTGESAVQIMTIHKSKGLEFPVVFAAGMGKRFNFR 532

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                + I P L       +   +  + +     + + L   +  E  R+LYV +TRA +
Sbjct: 533 DMNASILIHPELGIGADAILPEKRIIAPSLCRQIIRRALLMESLGEELRVLYVALTRAKE 592

Query: 661 QLIICKHSNT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           +LI+                         S  ++   +T++D V  +      +  +   
Sbjct: 593 KLILSGTIGALYPELGELSALRDSEEPLLSLGRRLGGKTYWDYVLPALARHRCMAPLFHE 652

Query: 702 --------NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK----------- 742
                   N + KD            E T  E  E  ++ M ++ +              
Sbjct: 653 YGIFMNTANPLYKDPAEFKVTRVTARELTESEVMEQAEREMKKETLENWNPGRVFDSEIR 712

Query: 743 --------LFSPIKNDINEPYILNPSTI-------DTKGKTNLESLLSDN---------- 777
                      P +   + P  ++ S +       +   +  ++    +           
Sbjct: 713 EEIQRRFSFVYPYQYLEDLPVKVSVSELKKRSYHSEQDLEETVDYETEEEIQPLVPRFIE 772

Query: 778 -------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL-LLSI 828
                      RG   H++++ +       R           +A+    KE +++ +  I
Sbjct: 773 EKKEEGYTGALRGTAYHRVMECLDYQKTANRDEIRRQLREWVDARKMERKEAESVRVKDI 832

Query: 829 TRLLENPMMTTAMSCDSY----SEVSVSGKINCP--------KKDIIISGRIDQISISQQ 876
              +E P+     +         E                  ++++++ G ID   I  +
Sbjct: 833 WNFVETPLGQRMKAASEKRLLFREQPFVIARKASELDPQWQCEENVLVQGIIDAYFIEDE 892

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            I + +YKT      E + +   +  QL  Y + L+     + +    IY
Sbjct: 893 EIVLVDYKTDFVRRGEEQKLIDRYHVQLEDYAQALERM-TGRKVKERYIY 941


>gi|327441306|dbj|BAK17671.1| ATP-dependent exoDNAse beta subunit [Solibacillus silvestris StLB046]
          Length = 1239

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/983 (15%), Positives = 316/983 (32%), Gaps = 121/983 (12%)

Query: 55   QASQTQCIEERFSLLSSF------FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            +A +    E+ + L+ +        LT+K T +               KE L   ++ F 
Sbjct: 277  KAMEEGSWEQAYELIPAVEFGRIKPLTKKDTEEDKQYYAVAKNHRDTAKEMLSDLKETFF 336

Query: 109  KIRDRFNTYKMF---KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK--- 162
                +    +M          + L    +  +++AK++  +LDF DL     ++L     
Sbjct: 337  ARHPKLYVQEMAATKPILETLVKLTIEYSEAFKKAKQERGLLDFSDLEHYALEILTDEES 396

Query: 163  ---RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
                 + + +     +    +L+DE QD + +Q  +++ +       KN       +F V
Sbjct: 397  TSNPPLPSDVALNFQKRFKEVLVDEYQDVNFLQETILQLV-------KNGGEQDGNMFMV 449

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD KQSIY+F  AEP+  L + +  ++  +  G K   I+L  +FRS +++L   + VF 
Sbjct: 450  GDVKQSIYAFRLAEPRLFLDKYKRFEEDPSGTGMK---IDLNANFRSRSEVLEGTNYVFE 506

Query: 280  IP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                E    ++ D    ++  +S   Q   ++L        +     Q    +       
Sbjct: 507  QIMDEEVGEIAYDEQAKLKFGASYDEQQVPIELVLL-----EGDSKAQIIPGSEEGSEEE 561

Query: 338  QESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTR 394
              SSA   AR I   I +++       N      R +  ++I+VL+R R          +
Sbjct: 562  SISSAQQEARYIIQRIRDLVDRGGQVYNPKTKSMRPVSYRNIVVLMRSRTWYTTFAEEFK 621

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                   + +         + L +  ++   + I +   D+    +L++P    +E+++ 
Sbjct: 622  ----LAGLPLYAETDGGYFESLEVMIMINTLKVIDNPYQDIPLASVLRAPFIGLTENELA 677

Query: 455  KICTQRHE-------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            KI     +        +   E          +K         +    ++  +  D    +
Sbjct: 678  KIRLINGKVPFYEALKQYKEEATGDMPIETEAKLDKFFTMHQKWRQFSRHGALADLVWQV 737

Query: 508  LGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTI 561
                   +       G +    L    +  L  E++S+  L   +  +++         I
Sbjct: 738  YLDTNYYEMVGAMANGKQRQANLRALHDRALSYEKSSFRGLFRFLRFIDRMNSRGDDLGI 797

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             ++ S   + V ++T+H +KGLE PVVF+        +     +                
Sbjct: 798  AKSTSEADDVVTLLTIHKSKGLEYPVVFVAGMSRNFNTKDLGSRYIFDQDFGLAIKSVNP 857

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK------- 674
                 S +     + +      + E  R+LYV MTRA ++LI+        ++       
Sbjct: 858  DLNIISTSLPHLYVKEKKLAKMKAEEMRVLYVAMTRAKERLILVGSIKDWEKQKEEWAFY 917

Query: 675  ------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS------- 715
                        +S   ++   V  +              S        +          
Sbjct: 918  QELEETVLPAYIRSKANSYLSWVGPAVARHNDFLFADYGYSNEAATTEKWTVRIIPNRDY 977

Query: 716  --THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
               +  E    E  E        + + K+  +P             S  + K   +L+ +
Sbjct: 978  LLANEAETVEQEVVEQAVNEELVELLTKRFTTPYPYANAVTKKSKTSVSEQKRLESLQQM 1037

Query: 774  LSDN---------------------------QTFNRGLIIHKLLQVIF---TLPEHKRKN 803
              +                                 G  +H ++Q I         + K 
Sbjct: 1038 EEEQLYNMEAKRYVKTDVPSFMLKGKKERKLSATEVGTAVHAVMQHIPQQGFASIEETKQ 1097

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINCPKKD- 861
            +I S   +        +  +    +    E  +      +     E   +  +   + D 
Sbjct: 1098 YIQSLVERQLLQQIEADAVSA-EKVFAFFETEIGGRFKKAKQVLREEPFTLSLKDQEGDA 1156

Query: 862  IIISGRIDQISISQQN-IFIFEYKTHHHVP---QEIEHIPYT----HIAQLSIYEKILKD 913
             II G ID I   +     + +YKT +       + E I       +  QL+ Y+  ++ 
Sbjct: 1157 QIIQGVIDCIFEDEHGNWVLLDYKTDYIEQYLLGDFEKIKQKMTKSYQIQLNYYQHAVQS 1216

Query: 914  SYPNKSLVCLLIYVSEPKVFIIP 936
                + +  +L   S  +   I 
Sbjct: 1217 IKRIQIIDRILYLYSIGQEVKID 1239


>gi|323489925|ref|ZP_08095147.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2]
 gi|323396432|gb|EGA89256.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2]
          Length = 1202

 Score =  383 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 154/970 (15%), Positives = 325/970 (33%), Gaps = 107/970 (11%)

Query: 37   LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
              +E+   T  +  QT   A +    E  ++   SF   +  + +K+     + +++   
Sbjct: 252  AVLESTFRTDAEVIQTAIGALEN-SWESLYAFSKSFKWEKAASIRKDSCDPALAEEAKAR 310

Query: 97   KEKLKKSQDEFIKIRDRFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDF 149
            +  +KK            +  ++ +            + L +     Y+  K    ++DF
Sbjct: 311  RNDVKKIVSGLFDAYFTRSPKRLLEEMREMAPLMKTLVELTQLFADQYKALKIDRALVDF 370

Query: 150  EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
             DL     ++L +    + I  +       +L+DE QDT+L+Q  ++  +       K+ 
Sbjct: 371  SDLEHYALEILMEEGEPSAIAKEYQDHFKEVLVDEYQDTNLLQETILNLV-------KSG 423

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  LF VGD KQSIY F  AEP   L +    +  A N G     I+L  +FRS  +
Sbjct: 424  DEQNGNLFMVGDVKQSIYRFRLAEPMLFLGKYSRFRHDAENTGL---RIDLNANFRSRKE 480

Query: 270  ILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            IL   + +FS     +   +  D    ++ ++    Q+  ++L      + + +   +  
Sbjct: 481  ILDGTNYIFSQIMGERVGEIDYDEAAALKAKAPYSEQLSPIELTLIHEPETEEELEDEDL 540

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRK 384
            +             +   AR IA  I+ ++ ++ + ++    K+R ++ +DI+VL+R   
Sbjct: 541  A------------KSQWEARFIAKKINELMNSEKMVNDPWTQKQRPLEYRDIVVLMRSMT 588

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
             +       +       + +         + L +  ++   R I +   D+  V +L++P
Sbjct: 589  WSGDFVDEFKM----AGVPLYAELTGGYFEALEVMIMLNTLRVIDNPYQDIPLVSVLRAP 644

Query: 445  LFNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
                 E+++ +I     +       +T              K +  +  +    ++A+  
Sbjct: 645  FIGLKENELAEIRLAAPQASFYEAVKTFMRAGTGIDPAAAEKLRRFMLQLEGWRNLARRG 704

Query: 499  SPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ- 556
            S  +    +       +       G +    L    +  L  E+ S+  L   +  +++ 
Sbjct: 705  SLAELIWQVYLDTNYYEMVGAMTNGKQRKANLRALHDRALEYEKTSFRGLFRFLRFIDRM 764

Query: 557  ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                      ++ S   N VR+MTVH +KGLE PVVF   TG         K        
Sbjct: 765  RERGDDLGTAKSLSEKENVVRLMTVHKSKGLEFPVVFFAGTGRAFNEMDFKKSYLFDQDY 824

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                       + +  +     + +  +   + E  R+LYV MTRA + L +       +
Sbjct: 825  GLAVKAVNPDTRIEYTSLPFLAVREMKQLQMKAEEMRVLYVAMTRAKESLYMTASVKDID 884

Query: 673  E-----------------KKSNQRTWYDMVYDSFHNDERV-------------------- 695
            +                  +S  + + D +  +                           
Sbjct: 885  KLFEKWKVSTNEVRLPDFMRSRAKGYLDWIGPAVARHPDAEAQLNMTGNFLNHSSRFHIE 944

Query: 696  --------KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK-QLMDEQKIPKKLFSP 746
                      +     + KDE  + ++     E    +    +      +Q + +     
Sbjct: 945  IIESQSLLPAVGNIEELLKDEEFSGDYQQQVNERFNFQYPHQLAVDKRSKQSVTEMKRLQ 1004

Query: 747  IKNDINEPYILNPSTIDTKGK---TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
            +   ++EP          +          +       + G  +H ++Q I       R  
Sbjct: 1005 MLQRLDEPESFIQKVTPERKMLLHRPNFMMDKRLSGADIGTAVHAVMQHIPLDRTLNRNE 1064

Query: 804  FIT--SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPKK 860
             I           L P +     +  + R   +       +  +   EV  +        
Sbjct: 1065 IIEFIETLVGMEILSPDEGKAVKVEELERFYASKTAARLRAATNIKREVPFTYAKKDADG 1124

Query: 861  DI-IISGRIDQISISQQNIFIFEYKTHHHVPQE--IEHIPYTHIAQLSIYEKILKDSYPN 917
            D  II G +D +   Q    + +YKT            I   +  QL++Y++ ++     
Sbjct: 1125 DHQIIQGIVDCLFEEQDGWVLLDYKTDRVTQITNIQNEISERYGVQLTVYQEAIESIL-K 1183

Query: 918  KSLVCLLIYV 927
              +   L+Y+
Sbjct: 1184 IPVQERLLYL 1193


>gi|313617565|gb|EFR89889.1| ATP-dependent nuclease subunit A [Listeria innocua FSL S4-378]
          Length = 885

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 137/898 (15%), Positives = 303/898 (33%), Gaps = 113/898 (12%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              L K    ++ E K++  VLDF DL      +L K    + +     ++   +LIDE 
Sbjct: 1   LSELVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKNGAPSDVANSYKKQFKEVLIDEY 60

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+++Q  ++  +T       N++ +   LF VGD KQSIY F  AEP   + + +  Q
Sbjct: 61  QDTNMVQETILLLVT-------NSNDTKGNLFMVGDVKQSIYRFRLAEPTLFMAKYQEYQ 113

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIG 303
           +    +G     I+L  +FRS  ++L   + +F    +     +  D    +   +S   
Sbjct: 114 QDGEGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDEAAELTLGASFPE 170

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +  + + + +  +        S  +     + +R IA  I  MI      
Sbjct: 171 ANNMATELLLIDMKSEEKESEDEL-------SPQELQKNQVESRAIATKIREMIDNKFPI 223

Query: 364 SNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            + K    R IQ +DI++L R     P +    +       I    N+     +   +  
Sbjct: 224 YDKKLQQNRPIQYRDIVILARAMTSAPDMEEAMK----IKDIPFYANNNSGYFETTEVAT 279

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----C 476
           ++AL + I +   D+S   +L+SP+   +E+++ +      +    ++ +  + +     
Sbjct: 280 MIALMKVIDNPYQDISLAAVLRSPIIGLNEEELGQXXXXPKKG-YFFDAMLAYKDITVSD 338

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNF 535
             +K    I  ++    ++   +       I       +       G +    L    + 
Sbjct: 339 AANKISRFITQLNNWRELSIRENLTALIWQIYQETNFYEFVGGLPGGKQRQANLRALYDR 398

Query: 536 TLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE PVV +
Sbjct: 399 ANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIV 458

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                +        K  +                      +   + +        E  R+
Sbjct: 459 SGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAIKQKKSXXMIAEEMRV 518

Query: 651 LYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDMVYDSFHN 691
           LYV +TRA +++I+        +                    ++  + + D + ++   
Sbjct: 519 LYVALTRAEEKIILTATVPDFEKTSKNWLQVSNQQETILPAAIRAKAKCYLDWIGNATIR 578

Query: 692 DERVKKI------------------------KLTNSINKDEWIAYEWSTHHPENTPLE-- 725
               K++                         LT+ + K++   +  +    +  P++  
Sbjct: 579 HSHFKELLCEEKIKTLPTDMKLQVEIKTKEMFLTDDLEKEKSDNWMENVKAHKQVPVKSP 638

Query: 726 -------------REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                        ++E   ++  +Q + +        D      +               
Sbjct: 639 YKDEIERFMHYQYKDEEATEIRAKQSVTELKRQFSLQDSWSDTSILKEFQKVSLDRPKFL 698

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKNAKLWPAKEYKNL-LLSITR 830
             +       G  +H L+Q +    +   K+ ++     +   +    + K + +  I  
Sbjct: 699 QQNKLSATEIGTAMHTLMQAVPLDDKPTEKDLVSLLQLMREKDILTEAQIKAINVNQIIA 758

Query: 831 LLENPMMTTAMS--CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFI 880
             E+ +  T +        EV  S  +            + ++I G +D +   + +I +
Sbjct: 759 FFESALGKTVLQKKDKVKREVPFSYLLPAAKLYNQTNLDEHVLIQGVVDSMIEEEDSIIL 818

Query: 881 FEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            +YKT              + +   +  Q+ +Y + ++     K     L +     +
Sbjct: 819 IDYKTDKIEGRYDNWEAAEKVMKERYQIQIKLYAEAIQAISRKKVSHAYLYFFDGQHI 876


>gi|254557326|ref|YP_003063743.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1]
 gi|254046253|gb|ACT63046.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1]
          Length = 1249

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/1007 (15%), Positives = 304/1007 (30%), Gaps = 136/1007 (13%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFL-----TQKFTPQKNIITQEINKKSPDLKE 98
             T  K   TL++   T    E  + +++F +     T K  P+K    + +      +K+
Sbjct: 263  ATAQKTLTTLREQLATASWNELRTQVATFKIGALKKTYKDEPEKTARAKTMGTFVDGVKK 322

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
            ++    + +    ++     M  +       +   K     +   K++  VLDF DL   
Sbjct: 323  QMTTLSETYFAADEQQVLDIMVGAKSIVTELVDATKQFKTAFAAEKRRRHVLDFSDLEHL 382

Query: 156  TNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            T  +L    +       ++  +   +++DE QD + +Q  +++ L             P 
Sbjct: 383  TLQILTSDNESGQAALAQLRAQFEEVMVDEYQDINSLQESILQLLA---------RDQPG 433

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             +F VGD KQSIY F  A+P   L +         +       I L  +FRS A++  + 
Sbjct: 434  NMFMVGDVKQSIYQFRLADPLLFLHKYHDFGTNPEH----GERIVLAENFRSVANVDHLT 489

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + +FS   +A     D       +         +     ++     + +   E  ++   
Sbjct: 490  NLIFSQLMDAPVGQIDYDEAAYLKYGPKDYPADMPQTTNLLLYQT-ETDKSTEDVSTDET 548

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391
            +   +  A      +A  I  +   D        G+ R  +  D+ +LV  R     I  
Sbjct: 549  NFSIDDPAVGSITMVAQKILALKAQDKPIYERANGEYRPFRYSDVALLVPTRNHNLTIID 608

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
            + +     Y I VV ND         I+ +MAL   I +   D+  V +L+SP+    E+
Sbjct: 609  VFK----RYHIPVVVNDAQNYFQTTEIRIMMALLSIIDNPYQDIPLVAVLRSPIVGLDEN 664

Query: 452  DIFKICTQRHETETVYEYIQ-----------KFANCGISKFQHVIKYIHELIHIAQFCSP 500
             +  +  Q   ++                  ++ +   +K +  +  + E   +A+    
Sbjct: 665  QLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEYGDQVYAKIETFLTQLTEFRDLARRNQI 724

Query: 501  HDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                  I               G +    L          EQ S+  L + +  + +   
Sbjct: 725  VTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERAYTYEQGSFKGLFQFVRFIRRMQE 784

Query: 560  TIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              +         +   V +MT+H +KGLE PV+F++D   Q           +       
Sbjct: 785  KDQDLAAAVAETDAEAVNVMTIHGSKGLEYPVIFVMDMDKQFNQTDTRSSALLDREAGIG 844

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                    + K          + + K  + E  R LYV MTRA  QL +       +   
Sbjct: 845  ITYLDPETRVKYPTLPQVVTKQVVSKKMRAEEMRKLYVAMTRAQQQLYLVGTIKDIDTAT 904

Query: 676  SNQR----------------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
               R                       W  M        +     +  N    D+     
Sbjct: 905  EKWRQAFASDGRVLSAQARIAATNQLDWVGMAVIRHPAMKAYWGDEWPNYELTDDPTKLA 964

Query: 714  WSTHHPENTPLEREETIKQLMDEQ--------------------KIPKKLFSPIKNDINE 753
                       E+ E +     +                             P +     
Sbjct: 965  VELGDATTVLAEQSEAVTDTQPDALELVEQQVTIDVDQVTRDYLTTLLNFHYPHQASTTT 1024

Query: 754  PYILNPSTIDTKGKTN-------------------------------LESLLSDNQTFNR 782
                + S +    +                                     +    +   
Sbjct: 1025 TAYQSVSEVKRIFEDPDTPLMNANPTVSQRRSRPTSRFVTGSLELPQFLQTMQAPTSAEV 1084

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            G   H +L+ +  L +   +  + S       N  L         + +I    ++ + + 
Sbjct: 1085 GSATHLVLEQL-DLTKPVNETTVQSTIDGLVANRVLTTNVAKLIAVDTIVAFYQSALGSQ 1143

Query: 840  AMS--CDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +      + EV  S  I               ++I G ID    +   + +F+YKT H 
Sbjct: 1144 ILDNPAKVHREVPFSLLIPARQIFDVDEHETGKVLIHGIIDGYLETADGLTLFDYKTDHV 1203

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              +  E +   +  Q+ +Y   L   YP K     L  + +     +
Sbjct: 1204 --KRPEELKTRYAGQVKLYAAALASMYPGKVTKQYLYSLPQQVFVPV 1248


>gi|28379194|ref|NP_786086.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1]
 gi|81630835|sp|Q88U41|ADDA_LACPL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|28272032|emb|CAD64937.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1]
          Length = 1249

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/1007 (15%), Positives = 304/1007 (30%), Gaps = 136/1007 (13%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFL-----TQKFTPQKNIITQEINKKSPDLKE 98
             T  K   TL++   T    E  + +++F +     T K  P+K    + +      +K+
Sbjct: 263  ATAQKTLTTLREQLATASWNELRTQVATFKIGALKKTYKDEPEKTARAKTMGTFVDGVKK 322

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
            ++    + +    ++     M  +       +   K     +   K++  VLDF DL   
Sbjct: 323  QMTTLSETYFAADEQQVLDIMVGAKSIVTELVDATKQFKTAFAAEKRRRHVLDFSDLEHL 382

Query: 156  TNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            T  +L    + S     ++  +   +++DE QD + +Q  +++ L             P 
Sbjct: 383  TLQILTSDNESSQAALAQLRAQFEEVMVDEYQDINSLQESILQLLA---------RDQPG 433

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             +F VGD KQSIY F  A+P   L +         +       I L  +FRS A++  + 
Sbjct: 434  NMFMVGDVKQSIYQFRLADPLLFLHKYHDFGTNPEH----GERIVLAENFRSVANVDHLT 489

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + +FS   +A     D       +         +     ++     + +   E  ++   
Sbjct: 490  NLIFSQLMDAPVGQIDYDEAAYLKYGPKDYPADMPQTTNLLLYQT-ETDKSTEDVSTDET 548

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391
            +   +  A      +A  I  +   D        G+ R  +  D+ +LV  R     I  
Sbjct: 549  NFSIDDPAVGSITMVAQKILALKAQDKPIYERANGEYRPFRYSDVALLVPTRNHNLTIID 608

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
            + +     Y I VV ND         I+ +MAL   I +   D+  V +L+SP+    E+
Sbjct: 609  VFK----RYHIPVVVNDAQNYFQTTEIRIMMALLSIIDNPYQDIPLVAVLRSPIVGLDEN 664

Query: 452  DIFKICTQRHETETVYEYIQ-----------KFANCGISKFQHVIKYIHELIHIAQFCSP 500
             +  +  Q   ++                  ++ +   +K +  +  + E   +A+    
Sbjct: 665  QLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEYGDQVYAKIETFLTQLTEFRDLARRNQI 724

Query: 501  HDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                  I               G +    L          EQ S+  L + +  + +   
Sbjct: 725  VTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERAYTYEQGSFKGLFQFVRFIRRMQE 784

Query: 560  TIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              +         +   V +MT+H +KGLE PV+F++D   Q           +       
Sbjct: 785  KDQDLAAAVAETDAEAVNVMTIHGSKGLEYPVIFVMDMDKQFNQTDTRSSALLDREAGIG 844

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                    + K          + + K  + E  R LYV MTRA  QL +       +   
Sbjct: 845  ITYLDPETRVKYPTLPQVVTKQVVSKKMRAEEMRKLYVAMTRAQQQLYLVGTIKDIDTAT 904

Query: 676  SNQR----------------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
               R                       W  M        +     +  N    D+     
Sbjct: 905  EKWRQAFASDGRVLSAQARIAATNQLDWVGMAVMRHPAMKAYWGDEWPNYELTDDPTKLA 964

Query: 714  WSTHHPENTPLEREETIKQLMDEQ--------------------KIPKKLFSPIKNDINE 753
                       E+ E +     +                             P +     
Sbjct: 965  VELGDATTVLAEQSEAVTDTQPDALELVEQQVTIDVDQVTRDYLTTLLNFHYPHQASTTT 1024

Query: 754  PYILNPSTIDTKGKTN-------------------------------LESLLSDNQTFNR 782
                + S +    +                                          +   
Sbjct: 1025 TAYQSVSEVKRIFEDPDTPLMNANPTVSQRRSRPTSRFVTGSLELPQFLQTTQAPTSAEV 1084

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            G   H +L+ +  L +   +  + S       N  L         + +I    ++ + + 
Sbjct: 1085 GSATHLVLEQL-DLTKPVNETTVQSTIDGLVANRVLTTNVAKLIAVDTIVAFYQSALGSQ 1143

Query: 840  AMS--CDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +      + EV  S  I               ++I G ID    +   + +F+YKT H 
Sbjct: 1144 ILDNPAKVHREVPFSLLIPARQIFDVDEHETGKVLIHGIIDGYLETADGLTLFDYKTDHV 1203

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              +  E +   +  Q+ +Y   L   YP K     L  + +     +
Sbjct: 1204 --KRPEDLKTRYAGQVKLYAAALASMYPGKVTKQYLYSLPQQVFVPV 1248


>gi|311067549|ref|YP_003972472.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus 1942]
 gi|310868066|gb|ADP31541.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus 1942]
          Length = 1234

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 153/1033 (14%), Positives = 321/1033 (31%), Gaps = 137/1033 (13%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTIL------KKAQTLQQASQTQCIEERFSLLSS 71
            +D+  +       + + + L+   G P           AQT    + +    E +  + +
Sbjct: 224  EDIAMVLSAVKEKLQRALELTKVPGGPAPRADNFLDDLAQTEDLIAHSADFTELYKRVPA 283

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-------TYKMFKSTL 124
                +    + +   Q + +++ DL+   KK  ++        +          M     
Sbjct: 284  VSFKRAKAVKGDEFDQALTEEATDLRNGAKKLLEKLKTDYFTRSPEQHLKSLSDMKPVIE 343

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-----KRDVSAWIRYKIDQEINH 179
              + L       +E AK++  ++DF DL      +L           +       ++   
Sbjct: 344  TLVQLVISYGKRFEAAKQEKSIIDFSDLEHYCLSILTAVNESGERKPSEAAAYYQEQFQE 403

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +L+DE QDT+L+Q  +++ +T       +   +   LF VGD KQSIY F  AEP   L 
Sbjct: 404  VLVDEYQDTNLVQEAILQLVT-------SGPEASGNLFMVGDVKQSIYRFRLAEPLLFLS 456

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            + +   +     G     I+L  +FRS ADIL   + +F      +    D       + 
Sbjct: 457  KYKRFTETGEGTG---RKIDLNKNFRSRADILDSTNFLFKQLMGGKVGEVDYDEQAELKL 513

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                       +              +       +   +  +  + A+ IA  I  ++ +
Sbjct: 514  GAS--------YPPNDQTETELLLIDRAEEKEASEETEELETVQLEAKAIAKQIQKLVSS 565

Query: 360  DTIFSNGKKR---VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                 +GK +    I+ +DI++L+R     P I    +       I V  N      + +
Sbjct: 566  PYKVYDGKSKTHSNIRYRDIVILLRSMPWAPQIMEELKA----QGIPVYANLTSGYFEAV 621

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ----- 471
             +   ++  + I +   D+    +L+SP+    E+++  I     +              
Sbjct: 622  EVSVAISALKVIDNPYQDIPLASVLRSPIVGADENELSLIRMHNKKAPFYEAMKDYLSGG 681

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
               +    K     + + +    ++  S  +    +    K          G +    L 
Sbjct: 682  DRNDELYQKLNAFFELLQKWRSFSKNHSVSELIWEVYRDSKYMDYVGGMPGGKQRQANLR 741

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585
               +   + E  ++  L   +  +E+           RA S   + VR+MT+H++KGLE 
Sbjct: 742  VLYDRARQYESTAFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKGLEF 801

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            PVVF    G         K   +   L           +       +  + K +++    
Sbjct: 802  PVVFAAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPEWRLSYPTLPLIAMKKKMRRELLS 861

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDERVKKIKLTN 702
            E  R+LYV +TRA ++L +        ++ +      +  D +   F   +    +    
Sbjct: 862  EELRVLYVALTRAKEKLFLVGSCKNREKQLAKWQASASQPDWLLPDFERYQAKTYLDFIG 921

Query: 703  SI-------------------------------------NKDEWIAYEWSTHHPENTPLE 725
                                                     D+ +             + 
Sbjct: 922  PALIRHRDMGTDALQGLASQADISEHPARFNIQMVSAQDLLDDDLEERQEEKSGRLDAIR 981

Query: 726  REETIKQLMDEQKIPKK---LFSPIKNDINEPYILNPSTIDTKGK--------------- 767
            R E +    + ++  ++      P  +        + S I  K +               
Sbjct: 982  RGEPVSGSFEFEEQARQRLSWRYPYHDVTKIRTKQSVSEIKRKKEYEDEYSGRSLIRPAD 1041

Query: 768  ------TNLESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAK 819
                       +        +G  +H ++Q I     P  +    I     +   L   +
Sbjct: 1042 GNMLYRRPAFMMKKGLTAAEKGTAMHTVMQHIPLTHAPSKEEAERIVKRLYEKELLTEDQ 1101

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIISGRID 869
            +    L  I +     +    +       EV  S  ++            + I++ G ID
Sbjct: 1102 QAVIDLEEIVQFFHTEIGEKLIGAKWINREVPFSMALSAQDAFLDTESKDEPILVQGIID 1161

Query: 870  QISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
             +  + + +F+ +YKT                 +   +  Q+ +Y K ++          
Sbjct: 1162 CLYETDEGLFLLDYKTDRIEGKFQHGFEGAAPILKKRYETQIELYTKAVEQITKTNVKGR 1221

Query: 923  LLIYVSEPKVFII 935
             L +     V  +
Sbjct: 1222 ALYFFDGGHVLNV 1234


>gi|300768583|ref|ZP_07078482.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
            plantarum ATCC 14917]
 gi|300493890|gb|EFK29059.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
            plantarum ATCC 14917]
          Length = 1249

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/1007 (15%), Positives = 303/1007 (30%), Gaps = 136/1007 (13%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLS-----SFFLTQKFTPQKNIITQEINKKSPDLKE 98
             T  K   TL++   T    E  + ++     +   T K  P+K    + +      +K+
Sbjct: 263  ATAQKTLTTLREQLATASWNELRTQVATFKIGALKKTYKDEPEKTARAKTMGTFVDGVKK 322

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
            ++    + +    ++     M  +       +   K     +   K++  VLDF DL   
Sbjct: 323  QMTTLSETYFAADEQQVLDIMVGAKSIVTELVDATKQFKTAFAAEKRRRHVLDFSDLEHL 382

Query: 156  TNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            T  +L    + S     ++  +   +++DE QD + +Q  +++ L             P 
Sbjct: 383  TLQILTSDNESSQAALAQLRAQFEEVMVDEYQDINSLQESILQLLA---------RDQPG 433

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             +F VGD KQSIY F  A+P   L +         +       I L  +FRS A++  + 
Sbjct: 434  NMFMVGDVKQSIYQFRLADPLLFLHKYHDFGTNPEH----GERIVLAENFRSVANVDHLT 489

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + +FS   +A     D       +         +     ++     + +   E  ++   
Sbjct: 490  NLIFSQLMDAPVGQIDYDEAAYLKYGPKDYPADMPQTTNLLLYQT-ETDKSTEDVSTDET 548

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391
            +   +  A      +A  I  +   D        G+ R  +  D+ +LV  R     I  
Sbjct: 549  NFSIDDPAVGSITMVAQKILALKAQDKPIYERANGEYRPFRYSDVALLVPTRNHNLTIID 608

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
            + +     Y I VV ND         I+ +MAL   I +   D+  V +L+SP+    E+
Sbjct: 609  VFK----RYHIPVVVNDAQNYFQTTEIRIMMALLSIIDNPYQDIPLVAVLRSPIVGLDEN 664

Query: 452  DIFKICTQRHETETVYEYIQ-----------KFANCGISKFQHVIKYIHELIHIAQFCSP 500
             +  +  Q   ++                  ++ +   +K +  +  + E   +A+    
Sbjct: 665  QLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEYGDQVYAKIETFLTQLTEFRDLARRNQI 724

Query: 501  HDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                  I               G +    L          EQ S+  L + +  + +   
Sbjct: 725  VTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERAYTYEQGSFKGLFQFVRFIRRMQE 784

Query: 560  TIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              +         +   V +MT+H +KGLE PV+F++D   Q           +       
Sbjct: 785  KDQDLAAAVAETDAEAVNVMTIHGSKGLEYPVIFVMDMDKQFNQTDTRSSALLDREAGIG 844

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                    + K          + + K  + E  R LYV MTRA  QL +       +   
Sbjct: 845  ITYLDPETRVKYPTLPQVVTKQVVSKKMRAEEMRKLYVAMTRAQQQLYLVGTIKDIDTAT 904

Query: 676  SNQ---------------------------------RTWYDMVYDSFHNDERVKKIKLTN 702
                                                        D + N E         
Sbjct: 905  EKWRQAFASDGRVLSAQARIAATNQLDWVGMAVIRHPAMKAYWGDEWPNYELTDDPTKLA 964

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQL---------MDEQKIPKKLFSPIKNDINE 753
                D        +     T  +  E ++Q           D          P +     
Sbjct: 965  VELGDATTVLAEQSEAVSGTQPDALELVEQQVTIDVDQVTRDYLTTLLNFHYPHQASTTT 1024

Query: 754  PYILNPSTIDTKGKTN-------------------------------LESLLSDNQTFNR 782
                + S +    +                                     +    +   
Sbjct: 1025 TAYQSVSEVKRIFEDPDTPLMNANPTVSQRRSRPTSRFVTGSLELPQFLQTMQAPTSAEV 1084

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            G   H +L+ +  L +   +  + S       N  L         + +I    ++ + + 
Sbjct: 1085 GSATHLVLEQL-DLTKPVNETTVQSTIDGLVANRVLTTNVAKLIAVDTIVAFYQSALGSQ 1143

Query: 840  AMS--CDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +      + EV  S  I               ++I G ID    +   + +F+YKT H 
Sbjct: 1144 ILDNPAKVHREVPFSLLIPARQIFDVDEHETGKVLIHGIIDGYLETADGLTLFDYKTDHV 1203

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              +  E +   +  Q+ +Y   L   YP K     L  + +     +
Sbjct: 1204 --KRPEELKTRYAGQVKLYAAALASMYPGKVTKQYLYSLPQQVFVPV 1248


>gi|295401125|ref|ZP_06811099.1| recombination helicase AddA [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|294976918|gb|EFG52522.1| recombination helicase AddA [Geobacillus thermoglucosidasius
            C56-YS93]
          Length = 1238

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/1030 (13%), Positives = 334/1030 (32%), Gaps = 131/1030 (12%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ++ + +      L       + +  +          L+    L+   + +  +E +    
Sbjct: 235  DAAKRLVSKALQLANLPGGPLPRAENYRD------DLRIIAHLETLLE-RSWDELYEAFQ 287

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS---T 123
            S  L++  + + +    ++ +++  L+++    L+  +D    +R     + M +     
Sbjct: 288  SLSLSRLKSCRGDEYDPQLLEEANSLRDQAKKKLESLRDNVFSLRPATWLHHMREMKPIV 347

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA------WIRYKIDQEI 177
               + L K     ++  K++  ++DF DL      +L+  D +               + 
Sbjct: 348  ETIVRLVKRFAEMFQARKREKGIVDFSDLEHYCLQILRHPDSADGQWLPSDAALDYRAQF 407

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              +L+DE QDT+++Q  +++ +                LF VGD KQSIY F  AEP   
Sbjct: 408  IEVLVDEYQDTNMVQEAILQLVA-----------KGGNLFMVGDVKQSIYRFRLAEPLLF 456

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L + +      T+       I+L  +FRS A++L   + +F           +   T   
Sbjct: 457  LSKYKRFTADGTH---PGMKIDLSNNFRSRAEVLHGTNFIFKQIMGETVGEIEYDETAEL 513

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            +   +    +     +++    +    ++       D    +  A ++A++I   +S  +
Sbjct: 514  KYGAVDYPDSEHAAPELIVIDRNSEEGEESGELDANDLAAAQLEARMMAKKIKEIVSEPL 573

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                     + R    +DI++L+R     P I    R       I V  +          
Sbjct: 574  -HVFDRKAKRMRRAMYRDIVILLRSMTAAPQIMEEFRA----QGIPVYADLSSGYFQATE 628

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--------Y 469
            I  +++L + I +   D+    +L+SP+   +E+++  I     +               
Sbjct: 629  IAVMLSLLKVIDNPYQDIPLASVLRSPIVGLNENELALIRIHEKKGTFYEAMMSFLHKAA 688

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
              K       K +   + +H+   +A+  S  D    +               G +    
Sbjct: 689  DNKEEEMLQQKLRLFSEQLHQWRTMARQRSLADVIWQLYRDTHFYDFVGGLPGGKQRQAN 748

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGL 583
            L    +   + E  S+  L   +  +E+           RA     + VRIMT+H++KGL
Sbjct: 749  LRALYDRARQYEATSFRGLFRFLRFIERLQERGDDLGAARALGEQEDVVRIMTIHSSKGL 808

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E P+VF+        +        +   L           +          + +  +   
Sbjct: 809  EFPIVFVAGLARPFNTRDLYGSYLLDKELGFAARFVDPKLRISYPTLPQIAIRQKKRLDY 868

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDM 684
              E  R+LYV +TRA ++L +      + ++                   ++  R + D 
Sbjct: 869  LAEEMRILYVALTRAKEKLYLVAAVKDAQKEIDKWKSTAAEEEWLLPDDVRAAARCYLDW 928

Query: 685  VYDS-------------------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
            +  +                     +   V +I +  +    +             T L+
Sbjct: 929  IGRALIRHRDGQRLGDLSHVCREVASHPSVWRITIVPARELHDANQETERLDEQIATALK 988

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG------------------- 766
            R E +      +++ + L      +         +  + K                    
Sbjct: 989  RGERVPTGGYAEEVQRLLSWKYAYEKETLVRAKQAVSELKRHREIFGENADIMLLHSFST 1048

Query: 767  ---KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYK 822
               +  +           +G  +H +++ +        +            +L   ++ +
Sbjct: 1049 PLFERPMFMREKTLTPAEKGTAMHIVMRHVDLTVPITEEAVREQIAKLVQMELLTHEQAE 1108

Query: 823  NL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDIIISGRIDQI 871
             + + SI    +  +     +    + E+  S  +            + +I++ G ID +
Sbjct: 1109 AVNVSSIVAFFDTEIGKRLRTASEVHREIPFSLALPAKEVYGDGVGKEGNILVQGVIDCL 1168

Query: 872  SISQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
               ++ + + ++KT           +  + +   +  Q+ +Y + ++  +      C L 
Sbjct: 1169 FADEKGLVLIDFKTDAVNRFAGGWREAKQVMLSRYQTQMQLYRRAVEQIWKMNVDECYLY 1228

Query: 926  YVSEPKVFII 935
                  +  I
Sbjct: 1229 LFDGSHLLPI 1238


>gi|150391860|ref|YP_001321909.1| recombination helicase AddA [Alkaliphilus metalliredigens QYMF]
 gi|251764495|sp|A6TVN2|ADDA_ALKMQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|149951722|gb|ABR50250.1| Recombination helicase AddA [Alkaliphilus metalliredigens QYMF]
          Length = 1197

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 161/995 (16%), Positives = 335/995 (33%), Gaps = 124/995 (12%)

Query: 27   QVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL------------ 74
             +  +N  +S++ E G P + ++A  L    Q   + +  +L  + F             
Sbjct: 224  AMDLLNNALSIAQEPGGPEVYEEA-ILSDLGQISELYDSLTLPITSFYEHLNHINHARLK 282

Query: 75   -TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
             +++  P     ++ +  K+  + + +K +           +  K+         L    
Sbjct: 283  PSKESDPVLKEESKNLRDKAKGIIKDIKDNIFTVSPEAYVEDLNKLHPLMDYLYQLVTGF 342

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
             + Y + K    ++DF DL     ++L        +  +  Q   +I +DE QD++++Q 
Sbjct: 343  TSRYAQKKADRGIVDFNDLEHYGLEILANE----LVAQEYQQRFEYIFVDEYQDSNIVQE 398

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +I+S+                LF VGD KQSIY F  A+P   + +     ++  +   
Sbjct: 399  TLIQSIKRKD-----------NLFMVGDVKQSIYRFRLADPSLFIEKYETFGEKEGDIN- 446

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                I+L  +FRS  ++L  V+ +F    + +           HR++         + E 
Sbjct: 447  --RRIDLAKNFRSRGEVLAGVNYLFKYIMSKELGEIGYD----HRAALYQGASFESIKEP 500

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQ 372
             +  +  + N   E      + L + +   + AR IA  I +++  +      +  R ++
Sbjct: 501  SIEVNLIEKN--MEIDEDIEEELQELADIEVEARIIAKRIKDLLNEEIYDEKNEVYRRLE 558

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             KDI+VL+R  K+                I    +      + + +   + L + I ++ 
Sbjct: 559  FKDIVVLLRTTKNWA---QSFLEAFIREGIPAYADANTGYFEAIEVGMFLNLLKVIDNKR 615

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH----VIKYI 488
             D+  + +++SP+  F+  ++  I     +  T Y+ I+K+        +      I+ +
Sbjct: 616  QDIPLISVMRSPIGEFTTAELIDI-RINDKNGTYYDAIEKYIEKNEDALKDKLVSFIEKL 674

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            ++  + A++     F   +L              G +    L    +   + E+ S   L
Sbjct: 675  NKWGNEARYIKIDQFIWKLLMDTGFYYYVGAMPGGLQRQANLRILFDRASQFEKTSIKGL 734

Query: 548  QELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               I  +E+           +    N N VRIM++H +KGLE PVV     G        
Sbjct: 735  FNFIKFIEKLQGSKGDMGAAKILGENDNVVRIMSIHKSKGLEFPVVIAAGMGKNFNLRDT 794

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
               + +   L   P       ++   +     +   +K  +  E  R+LYV  TR  D+L
Sbjct: 795  SADVLLHKDLGLGPKFVDSNLRTYRDSIAKLAMKDQIKIESLSEEMRILYVAFTRPKDKL 854

Query: 663  IICKHSNTSNEKKSNQR------------TWYDMVYDSFHNDERVKKIKLTNSINKDE-- 708
            II       +   +N              ++ D +  +       + ++       +E  
Sbjct: 855  IIVGSLRKIDRLVTNWNQADNIYSLMNAKSYLDWIGAALIKHPHGEVLRELGDFEFNELK 914

Query: 709  --WIAYEWSTHHPENTPLEREETIKQLMDEQ-------------------------KIPK 741
                  +W+ +      +  EE  K+L +E+                             
Sbjct: 915  YKAEDSKWTVNILGRQAVVLEEHEKRLKEEEYKEKLTHFNREDFSPHRHTEHKEEIDNRL 974

Query: 742  KLFSPIKNDINEPYILNPSTIDTK----------------GKTNLESLLSDNQTFNRGLI 785
                P       P  L+ S I                                   RG I
Sbjct: 975  NWQYPYPQATVIPSKLSVSDIKKANMGEMDSIVHQIPTLVKTPKFMEGKKALTAAERGTI 1034

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAM-S 842
            IH +LQ +        +          A+    +E   ++    I    ++ +    + +
Sbjct: 1035 IHFVLQHLALNQVGSEEEISQQIDLMVARELITEEEAQVVNVGKIVNYFKSEIGKRMLGA 1094

Query: 843  CDSYSEVSVSGKINCPK----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
               Y E     + +             + +++ G ID        + + +YK    +  +
Sbjct: 1095 EKVYRESPFIIEKSAKDVIHGLSENLEEKLLVQGVIDCYFEEMDGLVLVDYKNDIVLNGD 1154

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
               I   +  QL +Y + L+     K +    +Y+
Sbjct: 1155 TASIMTRYDVQLMMYAEALERI-TGKQVKETYLYL 1188


>gi|126652433|ref|ZP_01724605.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905]
 gi|126590704|gb|EAZ84819.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905]
          Length = 1238

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/1016 (14%), Positives = 318/1016 (31%), Gaps = 112/1016 (11%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
             + +    +   +   +                   Q   + SQ    +E F   ++   
Sbjct: 236  SLEEAFVLISEMRAITLQPDGPAPYAETAEIDFAMIQEGIRISQEGTWQELFDYFATVKW 295

Query: 75   -TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-------AS 126
             T K   +  ++  E+ + +   +E  KK  ++  +        ++ +            
Sbjct: 296  STLKRVSKDALVDVELQEHAKKKREAAKKIMNKMKETYFIRTPARLLEEIRLMAPIIGTL 355

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA----WIRYKIDQEINHILI 182
            + L    +  +  AK +  ++DF DL      +L            +   + +    +L+
Sbjct: 356  VELTTIFSEQFRLAKLERGIIDFSDLEHYALQILTVEIDGELQPSPVALDLKKRFKEVLV 415

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT+++Q  +++ +       K+       LF VGD KQSIY F  AEPK      R
Sbjct: 416  DEYQDTNMLQETILQLV-------KSGEEQDGNLFMVGDVKQSIYRFRLAEPKL---FMR 465

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSS 300
               +           I+L  +FRS  ++L   + +F+     +   +  D   +++  + 
Sbjct: 466  KYSEFLETPEVTGMRIDLNANFRSRKEVLNATNYIFAQIMGERVGEILYDDNASLKPAAP 525

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
               +   V+L        D +   +QE  T     L +   +   AR I   I  M+   
Sbjct: 526  YDEKEVPVELVVMHPP-QDEEVVDEQEDKTEEATELEELKKSQYEARFIIDRIRQMMEDG 584

Query: 361  TIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
            T   + K   +R ++  DI++L+R    +               I +         D L 
Sbjct: 585  TTVYDTKSLTERPLKYSDIVILMRSMTWSTD----LVEEFKLAGIPLYAESSKGYFDALE 640

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------TETVYEYI 470
            +  ++ + + + +   D+    +L++P    +E+++ KI     +        + +    
Sbjct: 641  VMIMLNVLKVVDNPYQDIPLASVLRAPFVGLTENELAKIRLADSKVPFYDALRQFIRSEG 700

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529
            Q+       K Q  +        +A+  S  D    I       +       G +    L
Sbjct: 701  QEIQTTTFEKLQRFMLAFENWRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQRQANL 760

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +  L  EQ ++  L   +  +++           ++     + VR++T+H++KGLE
Sbjct: 761  RILHDRALMYEQTAFRGLFRFLRFIDRMRTRGDDLGTAKSIGEKDDVVRLVTIHSSKGLE 820

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVVF+   G                             +    +     L +  +   +
Sbjct: 821  YPVVFVAGMGRPFNKMDFHNPYLFDQDFGLAVKAIDPENRITYTSLPFLALKEKKELEMR 880

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEK--------------------KSNQRTWYDM 684
             E  R+LYV MTRA ++LI+        +                     ++   ++ D 
Sbjct: 881  AEEMRVLYVAMTRAKERLILVGSVKNWEKTRDNWQDAQNISSDAPLQEYLRARANSYLDW 940

Query: 685  VYDSFHNDERVK----------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
            V  +                         I   +   Y +     ++   +   T +   
Sbjct: 941  VGPAVARHGDFASQATTSYKELDSPSHWWIQPVDTRHYSYDIQPFDDDIQQLLTTQEDEA 1000

Query: 735  DEQKIPKKLFSPI------------------------KNDINEPYILNPSTIDTKGKTNL 770
               +I  +  +                          + +  E Y   P+   +      
Sbjct: 1001 LLSEITTRFQAQYTYQKSTRKRSKTSVSEIKRIENLQRQEEPEYYFAPPAKQTSASIAPR 1060

Query: 771  ESLLSDN--QTFNRGLIIHKLLQVIFTLPEHKRKNF--ITSYCTKNAKLWPAKEYKNLLL 826
             + L D        G  +H ++Q I               +       L  A+     + 
Sbjct: 1061 PTFLQDQQLTGAEIGTAVHTVMQHIPQFGFDDIGAVKGFVADLVAKQLLTEAEGKVVPIA 1120

Query: 827  SITRLLENPMMTTA-MSCDSYSEVSVSG-KINCPKKDIIISGRIDQISISQ-QNIFIFEY 883
             +       +      +     E+  +  +++      I+ G ID +   +  N  + +Y
Sbjct: 1121 KVFHFFHTEIGQRFKQARQIRREMPFTISRVDEDGDAQIVQGIIDCLFEDEYGNWVLLDY 1180

Query: 884  KTHHH------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
            KT          P   + I   +  QL +Y + ++     K    +L      +  
Sbjct: 1181 KTDRILPHFAKEPALTKEIMGRYAVQLRVYSEAIESILQIKVSDKVLYLFDNEQTV 1236


>gi|312112099|ref|YP_003990415.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1]
 gi|311217200|gb|ADP75804.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1]
          Length = 1238

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/1030 (13%), Positives = 334/1030 (32%), Gaps = 131/1030 (12%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ++ + +      L       + +  +          L+    L+   + +  +E +    
Sbjct: 235  DAAKRLVSKALQLANLPGGPLPRAENYRD------DLRIIAHLETLLE-RSWDELYEAFQ 287

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS---T 123
            S  L++  + + +    ++ +++  L+++    L+  +D    +R     + M +     
Sbjct: 288  SLSLSRLKSCRGDEYDPQLLEEANSLRDQAKKKLESLRDNVFSLRPATWLHHMREMKPIV 347

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA------WIRYKIDQEI 177
               + L K     ++  K++  ++DF DL      +L+  D +               + 
Sbjct: 348  ETIVRLVKRFAEMFQARKREKGIVDFSDLEHYCLQILRHPDSADGQWLPSDAALDYRAQF 407

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              +L+DE QDT+++Q  +++ +                LF VGD KQSIY F  AEP   
Sbjct: 408  IEVLVDEYQDTNMVQEAILQLVA-----------KGGNLFMVGDVKQSIYRFRLAEPLLF 456

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L + +      T+       I+L  +FRS A++L   + +F           +   T   
Sbjct: 457  LSKYKRFTADGTH---PGMKIDLSNNFRSRAEVLHGTNFIFKQIMGETVGEIEYDETAEL 513

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            +   +    +     +++    +    ++       D    +  A ++A++I   +S  +
Sbjct: 514  KYGAVDYPDSEHAAPELIVIDRNSEEGEESGELDANDLAAAQLEARMMAKKIKEIVSEPL 573

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                     + R    +DI++L+R     P I    R       I V  +          
Sbjct: 574  -HVFDRKAKRMRRAMYRDIVILLRSMTAAPQIMEEFRA----QGIPVYADLSSGYFQATE 628

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--------Y 469
            I  +++L + I +   D+    +L+SP+   +E+++  I     +               
Sbjct: 629  IAVMLSLLKVIDNPYQDIPLASVLRSPIVGLNENELALIRIHEKKGTFYEAMMSFLHKAA 688

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
              K       K +   K +H+   +A+  S  D    +               G +    
Sbjct: 689  DNKEEEMLQQKLRLFSKQLHQWRTMARQRSLADVIWQLYRDTHFYDFVGGLPGGKQRQAN 748

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGL 583
            L    +   + E  S+  L   +  +E+           RA     + VRIMT+H++KGL
Sbjct: 749  LRALYDRARQYEATSFRGLFRFLRFIERLQERGDDLGAARALGEQEDVVRIMTIHSSKGL 808

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E P+VF+        +        +   L           +          + +  +   
Sbjct: 809  EFPIVFVAGLARPFNTRDLYGTYLLDKELGFAARFVDPKLRISYPTLPQIAIRQKKRLDY 868

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTWYDM 684
              E  R+LYV +TRA ++L +      + ++                   ++  R + D 
Sbjct: 869  LAEEMRILYVALTRAKEKLYLVAAVKDAQKEIDKWKSTAAEEEWLLPDDVRAAARCYLDW 928

Query: 685  VYDS-------------------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
            +  +                     +   V +I +  +    +             T L+
Sbjct: 929  IGRALIRHRDGQRLGDLSHVCREVASHPSVWRITIVPARELHDANQETERLDEQIATALK 988

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG------------------- 766
            R E +      +++ + L      +         +  + K                    
Sbjct: 989  RGERVPTGGYAEEVQRLLSWKYAYEKETLVRAKQAVSELKRHREIFGENADIMLLHSFST 1048

Query: 767  ---KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYK 822
               +  +           +G  +H +++ +        +            +L   ++ +
Sbjct: 1049 PLFERPMFMREKTLTPAEKGTAMHIVMRHVDLTVPITEEAVREQIAKLVQMELLTHEQAE 1108

Query: 823  NL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC---------PKKDIIISGRIDQI 871
             + + SI    +  +     +    + E+  S  +            + +I++ G ID +
Sbjct: 1109 AVNVSSIVAFFDTEIGKRLRTASEVHREIPFSLALPAKEVYGDGVGKEGNILVQGVIDCL 1168

Query: 872  SISQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
               ++ + + ++KT           +  + +   +  Q+ +Y + ++  +      C L 
Sbjct: 1169 FADEKGLVLIDFKTDAVNRFAGGWREAKQVMLSRYQTQMQLYRRAVEQIWKMNVDECYLY 1228

Query: 926  YVSEPKVFII 935
                  +  I
Sbjct: 1229 LFDGSHLLPI 1238


>gi|210623665|ref|ZP_03293974.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275]
 gi|210153430|gb|EEA84436.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275]
          Length = 1256

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 156/968 (16%), Positives = 327/968 (33%), Gaps = 133/968 (13%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY----------KMFKSTLA 125
            +K    K     E+ +      E  K++ +   K+ + +               +    A
Sbjct: 295  RKGKKIKKDDPDEMREAWKIATEYRKEAIESMKKVAEMYKNRYSKDIKKEIDMSYPIVRA 354

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHI 180
                       +EEAK+   ++DF D+     ++L   D       +    +  +E   I
Sbjct: 355  ISDAVLEFWKKFEEAKRDKGIIDFNDIEHFALEILVDEDENGRQIPSETAKRYSEEFKEI 414

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
             +DE QD++L+Q  ++ S+          +      F VGD KQSIY F  A+P+     
Sbjct: 415  FVDEYQDSNLVQEAILSSIA---------NKEMPNRFMVGDVKQSIYRFRQAKPEI---F 462

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHR 298
                +  +T   +    I L  +FRS  ++L  V+ +F    +     +  +    +   
Sbjct: 463  LHKYETYSTEKDKDGRKIMLYKNFRSRKNVLDAVNFIFENIMSKELGEIEYNDDEKLNPG 522

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            +          +       H  +    +       +      +  I AR I   I  ++G
Sbjct: 523  AVFEECYEENAIVGGSCDVHIIEKKANENLTDEQLEEEEDLDNIQIEARAIGKIIKEIVG 582

Query: 359  TD--------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +              + R  + KDI++L+R   +      +      +  I V  +   
Sbjct: 583  KNSDGKIQMVYDKEEKRYRQAKYKDIVILLRATSNWA---SVLTEEFTNMDIPVYADTGT 639

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
               D + IK +++L + I +   D+  + +LKSP++NF+ +++  I    +   + YE +
Sbjct: 640  GYFDTIEIKTIVSLLKVIDNPMQDIPLLAVLKSPIYNFTPEELIDI-RIVNRNVSFYEAM 698

Query: 471  Q---KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526
            +    F +C   K +  ++ + +    + + S  +    +               G +  
Sbjct: 699  KIYASFDDCDNKKVRDFLERLDDYQERSSYLSTDELLWYLYNETGYYAYAAILPAGKQRQ 758

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581
              L        + E  S+  +   I+ +E+           +  S N + VRIM++H +K
Sbjct: 759  ANLRILFERAKQFEDTSFKGIFNFINFVEKLKKSDSDMGEAKTLSENADVVRIMSIHKSK 818

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE P+V     G +       + +     L   P +     +    + +   + K +  
Sbjct: 819  GLEFPIVICGGMGKRFNKMDMNRGILYHHELGYGPQVVNLETRLSYPSMMKEAMKKQMVV 878

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR---------------------T 680
                E  R+LYV  TRA ++LII    N   +                           +
Sbjct: 879  EMLSEEMRVLYVAFTRAKEKLIITGAVNDVEKNLQKWASNSQKVTKNNKLDRYNLLKSAS 938

Query: 681  WYDMVYDSFHNDERVKKIKLTNS--INKDEWIAYEWSTHHPENTPLEREETIK------- 731
            + D +       +  + I   +S  + K++   +++  H  E+  L  E+  +       
Sbjct: 939  FLDWIMSVAIAHKDARGILPLDSEIVEKNDESEWKFKIHQREDYTLSSEDEEEINLADVL 998

Query: 732  ----------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------ 775
                         +  +       P +  + +   ++ + I        E  L       
Sbjct: 999  REELTSSREVDYSEIVRNRLDFKYPYQKSVEKSGSISVTEIKRLWNLEREDNLEIDINEI 1058

Query: 776  -----------------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
                                        +RG ++H ++Q+I                   
Sbjct: 1059 ESSRNNKKTEIKRPKFIQENKDEKLSPTHRGSVVHLVMQIINMDRVSTIDEIKNQIEEFV 1118

Query: 813  AKLWPAKEYKNLLL--SITRLLENPMMTTAMSCD-SYSEVSVSGKINCP----------K 859
             K    ++  +++    I +  ++ + T   + D    E +   +IN             
Sbjct: 1119 QKEIITQKEADVVNPFKIYKFFKSELGTRMKNADFVGREKAFYTEINMKNLFAKEGIDYD 1178

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
            + I++ G ID        I + +YKT     +  E +   +  QL IY K++++   +K 
Sbjct: 1179 ESIMLRGIIDAYFEENGEIVLLDYKTDFVNEENREEVVDRYRKQLEIYAKVIEEI-TDKK 1237

Query: 920  LVCLLIYV 927
            +    IY+
Sbjct: 1238 VKEQYIYL 1245


>gi|154502322|ref|ZP_02039382.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149]
 gi|153796947|gb|EDN79367.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149]
          Length = 1194

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/959 (15%), Positives = 323/959 (33%), Gaps = 101/959 (10%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEK 99
               L   +T+++A   +    + + ++   L+ K      P+K    + + +K+  + + 
Sbjct: 251  EADLMMIETMEKAETFEAFYGKINQIAWKRLSAKKDETIDPEKKEAVKMLREKAKKMVKD 310

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
            L+++           +      +    + L       + E K+   V+DF+D+      +
Sbjct: 311  LQETCFYETPEELAEDLRNTGSTMEELVFLVTTFARLFAEKKRSRNVIDFQDMEQFALQI 370

Query: 160  LKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            L +      V + +  +  ++   ++IDE QD++LIQ  ++                   
Sbjct: 371  LTEEKDGSLVPSAVAREYQEQFEEVMIDEYQDSNLIQEAIL-------TSVSTVSRGSYN 423

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            +F VGD KQSIY F  + P+  + +     +       +   I+L  +FRS  ++L   +
Sbjct: 424  VFMVGDVKQSIYRFRLSRPELFMEKYDTYSQA----DSEKQRIDLDRNFRSRKEVLDATN 479

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             VF    +       S   + + +      G    + +   Q+    N  +       + 
Sbjct: 480  YVFEQIMH------KSVGGVEYDARAALYPGAD--YPKSREQNGVSANRAELLLVDAQEL 531

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLITFLT 393
              ++++  + AR +A  I  ++    +      + R +Q KDI++L R  K       + 
Sbjct: 532  EEEDNARRLEARAVADRIKLLLLQGQVVDKKTKEYRPVQYKDIVILTRSIKGWA---DVF 588

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
              +  +  IS     R    +   +  L+   + + ++  DL    +L SP       ++
Sbjct: 589  AQVLAEEGISAHVGSREGYFETYEVSVLLDYLQILDNERQDLPLAAVLTSPFAGLDAREL 648

Query: 454  FKICTQRHE-------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             KI +   E            +  ++       K ++ +  + E   +  + + HD    
Sbjct: 649  AKIRSTYPELFFYEAVHAYASDDEKEKEPILQQKLKNFLCRVSEFRDMLPYTAMHDLLWE 708

Query: 507  ILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPT 560
            I+              G + +  +   +      E  SY  L   +  +EQ         
Sbjct: 709  IIEKTGYGMCISAMPGGAQRMANVQMLVAKAAAYEGTSYKGLFNFVRYIEQLKKYNVDYG 768

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                     + VRIM++H +KGLE P+V +   G    +      + I P L     +  
Sbjct: 769  EANLADEQADTVRIMSIHKSKGLEFPIVIVAGMGKLFNTQDVKGSIVIHPELGVGMDVID 828

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS---- 676
               ++K+   +   + K +      E  R+LYV MTRA ++LI+      +  K      
Sbjct: 829  LKKRTKAPTLLKKVIQKQVAVENLGEEMRVLYVAMTRAKEKLILTGVCKDARTKLETLST 888

Query: 677  ------------NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                        +  ++ D +  +    E    I + +S+   +      +        L
Sbjct: 889  REKTAFLPYEVLSANSYLDWLLPAASPAESSIGITVVDSLGAAQMEGAWEAADELTRNVL 948

Query: 725  E------------REETIKQLMDEQKIPK-----------KLFSPIKNDINEPYILNPST 761
            E            REE  +QL       +           +L      +     +L    
Sbjct: 949  ENWDTNQIHDAGYREELKRQLDFAYPFAEEQRFQMKFTVSELKKRAYMEEEAGEVLYQEP 1008

Query: 762  IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                                RG   HK L+++    E+ R++          +   + E 
Sbjct: 1009 EAVPLVPRFLGAEEAASGAVRGTAYHKFLELLDFEKEYTRESLEEHLKHLQTEGRISPEI 1068

Query: 822  KNLL--LSITRLLENPMMTTAMSC----DSYSEVSVSGKINCPK--------KDIIISGR 867
               +      + L+                Y E      ++  +          +++ G 
Sbjct: 1069 AEAVKTEDFLKFLQCESGKRMHQAAKKKQLYKEQPFVLGVDSGEIYPDTECRAQLLVQGI 1128

Query: 868  IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            ID     +  + + +YKT     +  + +   + +QL+ Y + L      K++   +IY
Sbjct: 1129 IDVYFEEEDGLVVLDYKTDRV--RTADELVRRYQSQLTYYARALSQI-TGKAVKEKIIY 1184


>gi|58698437|ref|ZP_00373347.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535060|gb|EAL59149.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 893

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 215/743 (28%), Positives = 362/743 (48%), Gaps = 56/743 (7%)

Query: 63  EERFSLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
           + +   L+  FL  +   +K+I    T+ I +K  D ++ ++  Q+         N+Y++
Sbjct: 204 DTKIENLAKVFLKSESHEKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQI 263

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           FK T + L + K     Y   K KN +LD+ D+I    +LL   D   W+ + +DQ+I+H
Sbjct: 264 FKRTSSLLGVFKVYVDLYNSEKSKNALLDYNDIIDLATNLLSDPDHKDWVLFNLDQKIDH 323

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           IL+DE QD S+ QW++I +L ++FF G   +   RTLF VGD KQSIY F GA P     
Sbjct: 324 ILVDEAQDNSISQWKIITNLCDEFFAG---NDEKRTLFVVGDVKQSIYRFQGANPHLFNY 380

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            ++    +    G+ +   +L  SFRST ++L +VD++F+     +     +   I+H  
Sbjct: 381 MQQYFHTKTG--GRDWISCQLEKSFRSTPEVLMLVDRIFNN---FRAEISFNDNEIKHVP 435

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            R    G +++W  +  + + +    Q   T          +  +LA+ IA  I N +  
Sbjct: 436 HRENDQGYIEIWPALPRRKEKEQRALQIPLTC---KEGYTIADRLLAQTIANRIHNWLNE 492

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             I    K R I+ +DI++LVR      ++            + VVG D F + D++A++
Sbjct: 493 GRIL-VAKDRHIEPRDIMILVR---QRNVLVDYIISELKKANVPVVGRDYFRIMDYIAVQ 548

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           DL+AL  F+L Q +DL+    LKSPLFNF+EDD+F I   R E  +++E IQ ++    S
Sbjct: 549 DLIALAEFLLLQANDLALANALKSPLFNFTEDDLFNIAYDRKEH-SLWERIQDYSVVIYS 607

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
           +       ++ LI++++  SP   FT IL    G+++F +R G E  +VLDEF+N  L+ 
Sbjct: 608 E-------LNYLINLSRTESPLALFTHILRT--GKKKFAARLGLECFEVLDEFMNLVLQF 658

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E     SLQ  +  +++  P IK    +  N VRIMT+H +KGL++P+VFLVDT +   +
Sbjct: 659 EN---PSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRN 715

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            + I        + D    P W  ++   N     + +  K     EY RLLYV +TRA 
Sbjct: 716 SESI--------IFDGTEAPFWCGKNN--NAYCDQVKREKKLEDYNEYLRLLYVALTRAE 765

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           D+L I        ++   + +WYD++  + + +   KK +    I K++      + ++P
Sbjct: 766 DELYILS------KEPVQKGSWYDLI--TKYGEPYEKKQRGLRPIFKEKVEVLCVNANYP 817

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                     +  +     +     S      ++   L  S  +      + +    +  
Sbjct: 818 YIYKKRDYFDVPVISLPPALAHSSVS------SQRVTLESSEKEGAEWIPVSATWMTDGY 871

Query: 780 FNRGLIIHKLLQVIFTLPEHKRK 802
             RGLIIH +LQ +  + + +RK
Sbjct: 872 A-RGLIIHSILQYMPKIEKERRK 893


>gi|308181395|ref|YP_003925523.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
            plantarum ST-III]
 gi|308046886|gb|ADN99429.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp.
            plantarum ST-III]
          Length = 1249

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 158/1007 (15%), Positives = 305/1007 (30%), Gaps = 136/1007 (13%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFL-----TQKFTPQKNIITQEINKKSPDLKE 98
             T  K   TL++   T    E  + +++F +     T K  P+K    + + K    +K+
Sbjct: 263  ATAQKTLTTLREQLATASWNELRTQVATFKIGALKKTYKDEPEKTARAKTMGKFVDGVKK 322

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
            ++    + +    ++     M  +       +   K     +   K++  VLDF DL   
Sbjct: 323  QMITLSETYFAADEQQVLDIMVGAKSIVTELVDATKQFKTAFAAEKRRRHVLDFSDLEHL 382

Query: 156  TNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            T  +L    +       ++  +   +++DE QD + +Q  +++ L             P 
Sbjct: 383  TLQILTSDNESGQAALAQLRAQFEEVMVDEYQDINSLQESILQLLA---------RDQPG 433

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             +F VGD KQSIY F  A+P   L +            +    I L  +FRS A++  + 
Sbjct: 434  NMFMVGDVKQSIYQFRLADPLLFLHKCHDF----GMNPEHGERIVLAENFRSVANVDHLT 489

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + +FS   +A     D       +         +     ++     + +   E  ++   
Sbjct: 490  NLIFSQLMDAPVGQIDYDEAAYLKYGPKDYPADMPQTTNLLLYQT-ETDKSTEDVSTDET 548

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391
            +   +  A      +A  I  +   D        G+ R  +  D+ +LV  R     I  
Sbjct: 549  NFSIDDPAVGSITMVAQKILALKAQDKPIYERANGEYRPFRYSDVALLVPTRNHNLTIID 608

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
            + +     Y I VV ND         I+ +M+L   I +   D+  V +L+SP+    E+
Sbjct: 609  VFK----RYHIPVVVNDAQNYFQTTEIRIMMSLLSIIDNPYQDIPLVAVLRSPIVGLDEN 664

Query: 452  DIFKICTQRHETETVYEYIQ-----------KFANCGISKFQHVIKYIHELIHIAQFCSP 500
             +  +  Q   ++                  ++ +   +K +  +  + E   +A+    
Sbjct: 665  QLVYLRIQNKTSDYFQAVQDFYHHYPTGPATEYGDQVYAKIETFLTQLTEFRDLARRNQI 724

Query: 501  HDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                  I               G +    L          EQ S+  L + +  + +   
Sbjct: 725  VTLIWQIYERTGFLDYVGGMPAGKQRQANLHALYERAYTYEQGSFKGLFQFVRFIRRMQE 784

Query: 560  TIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              +         +   V +MT+H +KGLE PV+F++D   Q           +       
Sbjct: 785  KDQDLAAAVAETDAEAVNVMTIHGSKGLEYPVIFVMDMDKQFNQTDTRSSALLDREAGIG 844

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                    + K          + + K  + E  R LYV MTRA  QL +       +   
Sbjct: 845  ITYLDPETRVKYPTLPQVVTKQVVSKKMRAEEMRKLYVAMTRAQQQLYLVGTIKDIDTAT 904

Query: 676  SNQ---------------------------------RTWYDMVYDSFHNDERVKKIKLTN 702
                                                        D + N E         
Sbjct: 905  EKWRQAFASDGRVLSAQARIAATNQLDWVGMAVIRHPAMKAYWGDEWPNYELTDDPTKLA 964

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQL---------MDEQKIPKKLFSPIKNDINE 753
                D        +     T  +  E ++Q           D          P +     
Sbjct: 965  VELGDATTVLAEQSEAVSGTQPDALELVEQQVTIDVDQVTRDYLTTLLNFHYPHQASTTT 1024

Query: 754  PYILNPSTIDTKGKTN-------------------------------LESLLSDNQTFNR 782
                + S +    +                                          +   
Sbjct: 1025 TAYQSVSEVKRIFEDPDTPLMNANPTVSQRRSRPTSRFVTGSLELPQFLQTTQAPTSAEV 1084

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            G   H +L+ +  L +   +  + S       N  L         + +I    ++ + + 
Sbjct: 1085 GSATHLVLEQL-DLTKPVNETTVQSTIDGLVANRVLTTNVAKLIAVDTIVAFYQSALGSQ 1143

Query: 840  AMS--CDSYSEVSVSGKINCPK---------KDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +      + EV  S  I   +           ++I G ID    +   + +F+YKT H 
Sbjct: 1144 ILDNPAKVHREVPFSLLIPARQIFDVDEHETGKVLIHGIIDGYLETADGLTLFDYKTDHV 1203

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              +  E +   +  Q+ +Y   L   YP K     L  + +     +
Sbjct: 1204 --KRPEDLKTRYAGQVKLYAAALASMYPGKVTKQYLYSLPQQVFVPV 1248


>gi|187935208|ref|YP_001884280.1| recombination helicase AddA [Clostridium botulinum B str. Eklund 17B]
 gi|251764511|sp|B2THC8|ADDA_CLOBB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|187723361|gb|ACD24582.1| ATP-dependent nuclease subunit A [Clostridium botulinum B str. Eklund
            17B]
          Length = 1243

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/953 (15%), Positives = 297/953 (31%), Gaps = 136/953 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            ++I  +       L +        +   N  K +        L       +   KK+  +
Sbjct: 303  KQIRDQVKKKISALIEGTFIASPDKMLDNIIKSYPYINQLTELTSEFIDRFTAKKKEKNI 362

Query: 147  LDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            LDF DL      +L     + + V + I  K       +L+DE QD++ +Q  +I  ++ 
Sbjct: 363  LDFNDLEHLCLKILIEENEENQIVPSTIAQKFKDYFEEVLVDEYQDSNNVQEAIIELVSR 422

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +S    +F VGD KQSIY F  A+P+  + +                 I+L 
Sbjct: 423  K-------NSDNPNVFMVGDVKQSIYKFRQAKPELFIDKYNSYSLD----KGINRKIQLY 471

Query: 262  LSFRSTADILTVVDKVFSIPEN--AQGLSEDSTTTIRHRSSRIGQ-------VGTVQLWE 312
             +FRS  +I+  V+ +F    +     L       +   ++   +        G +++  
Sbjct: 472  KNFRSREEIINGVNYIFKSVMSKTVGELEYTDVEALNLGANYPEKKNDDDIIGGPIEVHI 531

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-------IFSN 365
               S +  + +  +        +  +    ++ AR I   I+ +I               
Sbjct: 532  LDRSDNKEENDEFK------LQAEEEIGDVNLEARIIVKRINELISKKEGNKFKVLDKDT 585

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            G+ R ++ KDI++L+R  K+      +         I V  +      + + I+ +M+L 
Sbjct: 586  GEYRDLKYKDIVILLRATKNWS---EVLLDELGLAGIPVYADTGSGYFESIEIRTIMSLL 642

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-----YIQKFANCGISK 480
            + I +   D+  + +L SP+   S +++  I     E             +  +     K
Sbjct: 643  KVIDNPMQDVPMLSLLISPIIGLSAEELSDIRLIDKEKYFYENIIKISKEKLISVELQEK 702

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN 539
             ++++  I +    + +    +F   +               G      L        + 
Sbjct: 703  CEYILSSIDKWRRKSIYMPIDEFIWYLYMDTAYYGYVGAMPNGVLRQANLKILFQRARQF 762

Query: 540  EQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               S+  L   I+ +             +    N + +RIM++H +KGLE PVVFL   G
Sbjct: 763  SDTSFKGLFNFINFINKLTKSSGDMGSAKILGENEDVIRIMSIHKSKGLEFPVVFLAGCG 822

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                      K+     L   P       ++         + K +K  T  E  R+LYV 
Sbjct: 823  KNFNLMDLNNKILYHEELGLGPEYINLENRTSITTLPKEAIKKRMKLETLSEEMRVLYVA 882

Query: 655  MTRASDQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDS------- 688
             TRA ++LII      + +                        +++ D +  +       
Sbjct: 883  FTRAKEKLIITGAVRNAEKSIEKWINSAVLDKDVVLPYEISKGKSYLDWIGMALCKHKDG 942

Query: 689  -------------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI-KQLM 734
                           +D  + KI + N    D +   + +    +      ++ + K++ 
Sbjct: 943  EILRKKLGFSSEMCKDDLSMWKISIWNKYELDMYDELDENQEEEDVKISILDKDVNKEIK 1002

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK------------------------TNL 770
             E           K        ++ S +  +                             
Sbjct: 1003 SEVYRRLGYEYEFKESTKLTSNISVSDLKKRNIEDDIDTLKMFDLEEEDNKNKDIITPKF 1062

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
                       RG  IH  ++ I        K           +    +E  N +    I
Sbjct: 1063 LQEEKGISAAERGTAIHFAMKKIDFSKVGTLKEIKEQLNKLYDEELILQEEYNSINPYKI 1122

Query: 829  TRLLENPMMTTAM-----SCDSYSEVSVSGKIN-----------CPKKDIIISGRIDQIS 872
                ++ +    +         Y EV    +I+              + I + G ID   
Sbjct: 1123 LSFFKSSLGKKMLYVYNEGGKVYREVPFYTEISSLEIDESLPQKYANEKIRLQGIIDCFF 1182

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
                 I + +YKT +   +  E     +  QLS Y + +      K     L 
Sbjct: 1183 KCDDEIILLDYKTDYV--ENEEEFKDKYKNQLSYYSEAIFKMTGKKVDKKYLY 1233


>gi|154498367|ref|ZP_02036745.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC 29799]
 gi|150272678|gb|EDM99856.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC 29799]
          Length = 1206

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 159/1025 (15%), Positives = 326/1025 (31%), Gaps = 121/1025 (11%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSME----------TGNPTILKKAQTLQQAS 57
               E+     K L      Q       ++ ++E             PTI      LQ   
Sbjct: 206  DAGETP--WGKLLLEDAAAQARYWLSRMAGALEDCACDPNLDANYAPTISATIAGLQAFL 263

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT- 116
                     +  +          +K     E  ++   ++ + KK  ++  +     +  
Sbjct: 264  DGAAQGWDAAAAALPISFPPAGRKKMTECPEAAERVKSVRNRCKKRLEKLAEGFSDDSAG 323

Query: 117  -----YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIR 170
                   ++ +      L K   A Y   K++  VLDF DL      LL  +      + 
Sbjct: 324  LLSDMAAVYPAVRGLFALVKDFEAAYAAEKERRGVLDFSDLEHMAVRLLVGEDGSPTPLA 383

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +     + I++DE QDT+ +Q  +  ++++D           R LF VGD KQSIY F 
Sbjct: 384  KQWSGRYDEIMVDEYQDTNAVQNAIFSAISQD----------GRNLFMVGDVKQSIYRFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLS 288
             A+P   L + R      T    +   I L  +FRS A +L   + +F    +     + 
Sbjct: 434  LADPTIFLEKYRTFTPYETAEEGEPRRIILSKNFRSRAQVLEGANFIFRGIMSRSFGEMD 493

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
              +   +   +S           + +        +  +    +  D L         AR 
Sbjct: 494  YTADEALYPGASYPEGADYAVELDALDLAAGGGDDEDESGEKTPRDLLE--------ARF 545

Query: 349  IAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            +A  I  +       S+G+   R     D+++LVR      ++    R L     I    
Sbjct: 546  LAKRIKELKDGGFPVSDGEGGTRPAGYGDMVILVRSPN--SVLHHYARALGER-DIPWEA 602

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
            +      +   +   ++L + + +   D+  + +L+SP++ F+ D +  +     +T+  
Sbjct: 603  DAGGDYFETTEVSVALSLLQIVDNPRQDVPLISVLRSPVYGFTADRLAVLRAASPDTD-F 661

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEV 525
            Y  + K A  G       +  + +L   +   + H     I         F     G + 
Sbjct: 662  YAALVKGAEEGGVDCAAFLAELEDLRFRSGDRNSHQLLWQIYDRTNLLGIFGAMDEGEKR 721

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT----IKRAHSANHNEVRIMTVHTAK 581
               L        + E   +  L   ++ L +             +     VRI+++H +K
Sbjct: 722  QGNLLALCELARQFEAAGHKGLFGFLTYLTRLRDNGGKLAAPQAAREGGGVRILSIHKSK 781

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE P+V L     ++      + +   P L   P         +        + + L+ 
Sbjct: 782  GLEFPIVLLSGLTRRLNRDDMQRPILFHPQLGVGPKRLDTERMIEYPTLARRAVARQLEY 841

Query: 642  STQEEYNRLLYVGMTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                E  RLLYV MTRA ++LI+        ++ +K  +   Y          + V +  
Sbjct: 842  EMMAEELRLLYVAMTRAKEKLILSCALTRGAADLRKLAEDAEYPADPQVLSGCQSVGQWV 901

Query: 700  LTNSINKDEWIAYEWSTHHPEN----------------------TPLEREETIKQLMDEQ 737
            L   + + + +A   +  +P                         P  +   + + ++++
Sbjct: 902  LLPVLTRPDAVAIRRAADYPLPIAAAELGPDWDIRWVDGSDLLQPPERKTAVLSENVEDK 961

Query: 738  KIPK-----KLFSPIKNDINEPYILNPSTI------------------------------ 762
             +           P   D+  P  L  + +                              
Sbjct: 962  PVGDLTGVLTWKYPYAGDVEIPSKLTATQLKGRELDQEAGAEFPLPQGEPEEPAAVPAGK 1021

Query: 763  -DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
              T  +              +G  +H ++Q I        +          A  +   E 
Sbjct: 1022 RSTLRRPRFAEEEFGLTPAQKGTALHLVMQYIDFERAGTEEQVKEEIARLVAGAYITPEQ 1081

Query: 822  KNLL--LSITRLLENPMMTTAMSC-DSYSEVSVSGKINC--------PKKDIIISGRIDQ 870
               +    I    ++P+    M       E   S  +            + +++ G +D 
Sbjct: 1082 GEAVNPAKIAAFFQSPLGREMMESVSLRREFKFSILVPAADYCPGAGEGEQVLLQGVVDC 1141

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
               + + I + ++KT     + I+     +  QL+ Y + L++    + +   L + +  
Sbjct: 1142 CFETLEGITVVDFKTDRVTRRTIQERAEEYRPQLTAYSRALEEMTGRRVVRRALWFFALD 1201

Query: 931  KVFII 935
            +   +
Sbjct: 1202 QAVEV 1206


>gi|169826779|ref|YP_001696937.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41]
 gi|251764534|sp|B1HN90|ADDA_LYSSC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|168991267|gb|ACA38807.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41]
          Length = 1238

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/1016 (14%), Positives = 319/1016 (31%), Gaps = 112/1016 (11%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
             + +    +   +   +                   Q   + SQ    +E F   ++   
Sbjct: 236  SLEEAFVLISEMRAITLQPDGPAPYAETAEIDFAMIQEGIRISQEGTWQELFDYFATVKW 295

Query: 75   -TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-------AS 126
             T K   +  ++  E+ + +   +E  KK  ++  +        ++ +            
Sbjct: 296  STLKRVSKDALVDVELQELAKKKREAAKKIMNKMKETYFIRTPARLLEEIRLMAPIIGTL 355

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK----KRDVSAWIRYKIDQEINHILI 182
            + L    +  +  AK +  ++DF DL      +L          + +   + +    +L+
Sbjct: 356  VELTTIFSEQFRLAKLERGIIDFSDLEHYALQILTVEVDGELQPSPVALDLKKRFKEVLV 415

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT+++Q  +++ +       K+       LF VGD KQSIY F  AEPK      R
Sbjct: 416  DEYQDTNMLQETILQLV-------KSGEEQDGNLFMVGDVKQSIYRFRLAEPKL---FMR 465

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSS 300
               +           I+L  +FRS  ++L V + +F+     +   +  D   +++  + 
Sbjct: 466  KYSEFLETPDATGMRIDLNANFRSRKEVLNVTNYIFAQIMGERVGEILYDDNASLKPAAP 525

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
               +   V+L        D +   +QE  T     L +   +   AR I   I  M+   
Sbjct: 526  YDEKEVPVELVVMHPP-QDEETVDEQEDKTDEASELEELKKSQYEARFIIDRIRQMMEDG 584

Query: 361  TIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
            T   + K   +R ++  DI++L+R    +               I +         D L 
Sbjct: 585  TTVYDTKSMTERPLKYSDIVILMRSMTWSTD----LVEEFKLAGIPLYAESSKGYFDALE 640

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------TETVYEYI 470
            +  ++ + + + +   D+    +L++P    +E+++ KI     +        + +    
Sbjct: 641  VMIILNVLKVVDNPYQDIPLASVLRAPFVGLTENELAKIRLADSKVPFYDALRQFIRSEG 700

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529
            Q        K Q  +        +A+  S  D    I       +       G +    L
Sbjct: 701  QGVQTTTFEKLQRFMLAFENWRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQRQANL 760

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +  L  EQ ++  L   +  +++           ++     + VR++T+H++KGLE
Sbjct: 761  RILHDRALMYEQTAFRGLFRFLRFIDRMRTRGDDLGTAKSIGEKDDVVRLVTIHSSKGLE 820

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVVF+   G                             +    +     L +  +   +
Sbjct: 821  YPVVFVAGMGRPFNKMDFHHPYLFDQDFGLAVKAIDPENRITYTSLPFLALKEKKELEMR 880

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEK--------------------KSNQRTWYDM 684
             E  R+LYV MTRA ++LI+        +                     ++   ++ D 
Sbjct: 881  AEEMRVLYVAMTRAKERLILVGSVKNWEKTRDNWQDAQNIPSDAPLQEYLRARANSYLDW 940

Query: 685  VYDSFHNDERVK----------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
            +  +                         I   +   Y +      +   +   T +   
Sbjct: 941  IGPAVARHGDFASQATTSYKELDSPSHWWIQPIDTRHYSYDIQAFNDEIQQHLTTQEDEA 1000

Query: 735  DEQKIPKKLFSPI------------------------KNDINEPYILNPSTIDTKGKTNL 770
               +I  +  +                          + +  E Y   P+   +      
Sbjct: 1001 LLSEIKARFHAQYTYQKSTRKRSKTSVSEIKRLENLQRQEEPEYYFATPAKRTSTSIAPR 1060

Query: 771  ESLLSDN--QTFNRGLIIHKLLQVIFTLPEHKRKNF--ITSYCTKNAKLWPAKEYKNLLL 826
             + L D        G  +H ++Q I        +      +       L  A+     + 
Sbjct: 1061 PTFLQDQQLTGTEIGTAVHTVMQHIPQFGFDTIEAVKGFVANLVAKQLLTEAEGKVVPIK 1120

Query: 827  SITRLLENPMMTTA-MSCDSYSEVSVSG-KINCPKKDIIISGRIDQISISQ-QNIFIFEY 883
             +       +      +     E+  +  +++      I+ G ID +   +  N  + +Y
Sbjct: 1121 KVYHFFHTEIGQRFKQARQIRREMPFTISRVDEDGDAQIVQGIIDCLFEDEYGNWVLLDY 1180

Query: 884  KTHHH------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
            KT          P   + I   +  QL +Y + ++     K    +L      +  
Sbjct: 1181 KTDRILPHFAKEPALTKEIMGRYAVQLRVYSEAIESILQIKVSEKVLYLFDNEQTV 1236


>gi|197302903|ref|ZP_03167954.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC 29176]
 gi|197297984|gb|EDY32533.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC 29176]
          Length = 1256

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 157/1076 (14%), Positives = 316/1076 (29%), Gaps = 183/1076 (17%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            +R  L  +     + + +          + + + +      P     A+ L+   +    
Sbjct: 202  DREHLEDSRMVHTVEERVRQQLGDLYGLVRQAMEICQLPAGP--YMYAEALESDEKELKK 259

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN------- 115
             ER                K +  ++      +L++ ++  + +   + D          
Sbjct: 260  LERADSYEKMSEVLMDFNWKKLSGKKDETVDAELRKSVQAVRKQLKALIDGIQKSYFYAT 319

Query: 116  -------TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD---- 164
                        ++      L +     ++E K++  ++DF D+      +L +      
Sbjct: 320  ADEWVADMQDSAQAMRTLTGLVQEFADRFDEKKRRRNMIDFSDMEQFALAILTRNTEGKI 379

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
            V + +  +  +    +++DE QD++L+Q  ++                   +F VGD KQ
Sbjct: 380  VPSAVAEEYQERFAEVMVDEYQDSNLVQETIL-------TSVSGMSKGRNNMFMVGDVKQ 432

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            SIY F  + P+  + +                 I+L  +FRS  ++L   + +F      
Sbjct: 433  SIYRFRLSRPELFMEKYDTYSVE----SSPCQRIDLHKNFRSRKEVLDSTNYLFEKLMFR 488

Query: 285  --QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
               G+  D    +   +                   D+    + E        +    + 
Sbjct: 489  EFGGIEYDENAALYAGAEFPPIP------------EDAVFTDKTEVLIFNQQDMKARDAK 536

Query: 343  SILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
               AR IA  I  M+G+  I+  G    R IQ KDI++L R              +  + 
Sbjct: 537  EAEARMIARRIREMMGSGYIYDKGSDSFRKIQYKDIVILTRS---IQGWAESFSAVLAEE 593

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             I      R    +   I  L+   R + +   DL    +L SP      +++ +I    
Sbjct: 594  GIPAYSVSREGYFETYEISVLLDYLRILDNARQDLPLTAVLTSPFVGLDAEELAQIRLAY 653

Query: 461  HETETVYEYIQ-------------------------------------KFANCGISKFQH 483
                                                            + +     K   
Sbjct: 654  PNLPFYESVWLCGEEKTEETGADGSGETGEKEKKEKKKSDAEAENRSGEISEAVREKLAE 713

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQN 542
              + +     I  +   HD    IL     R    +   G + I  ++  +      E  
Sbjct: 714  FTRQVRYFRSILSYTPIHDLLAKILEETGYRTFIAAMPGGEQRIANVEMLIEKACAFEGT 773

Query: 543  SYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            SY  L   +  +EQ                  + VR+M++H +KGLE P+VF+   G   
Sbjct: 774  SYKGLFNFVRYIEQLKKYNVDYGEAGIMDEQADTVRLMSIHKSKGLEFPIVFVAGMGKSF 833

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                    + I P             ++K+   +   + +  K     E  R+LYVGMTR
Sbjct: 834  NMQDQRGSIVIHPDWGIGIDAVDLEQRTKNPTFLKRMIQEKTKLENLSEELRVLYVGMTR 893

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW--- 714
            A +++I+   +    E+        D++      +      K + ++ + E     +   
Sbjct: 894  AKEKMILTGTAKLGEEELLALEMMEDIIKREEKQNSWKADEKDSLALYQMEGAKTCFDWI 953

Query: 715  ----------------------------STHHPENTPLEREETIKQLMDEQKIPKK---- 742
                                        +    +   L RE       ++  +P+     
Sbjct: 954  LPALMRDWKKAEKWIQVRLVTREELSYGAATAGQAEVLAREVLEHWDTEKSYMPEWKELL 1013

Query: 743  -----LFSPIKNDINEPYILNPSTID----------TKGKTNLESLLSDN---------- 777
                    P   +         S +              +   E L  +           
Sbjct: 1014 SEQMNYTYPYLQEEQMKLKFTVSELKKRIYAGEQMREMQEDGGEELYQEPEIVPLVPGFM 1073

Query: 778  -------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
                      +RG   HKL++++    ++       +      K     E    +    I
Sbjct: 1074 QDQKEGLTGASRGTAYHKLMELLDFTRQYTEAALKNAVHDFEKKKKMTLEMAACIRISDI 1133

Query: 829  TRLLENPMMTTAMSC----DSYSEVSVSGKINC--------------PKKDIIISGRIDQ 870
               LE+       +       + E      ++                K+ I++ G ID 
Sbjct: 1134 LLFLESSSGKRMSAAAGKGKLWREQPFVLGVDADQVYPGFSGEPGSQEKEVILVQGIIDA 1193

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                +  I + +YKT     +  E +   + AQL  Y + L+     K +   +IY
Sbjct: 1194 YFEEEDGIVVLDYKTDKV--KSAEQLKERYHAQLEYYAQALEGLL-EKPVKEKIIY 1246


>gi|225174781|ref|ZP_03728779.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1]
 gi|225169908|gb|EEG78704.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1]
          Length = 1229

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 165/1040 (15%), Positives = 325/1040 (31%), Gaps = 131/1040 (12%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP---------------TILKKAQTLQQ 55
            E+ E + K L PL       +    S     G                   L++ + L+ 
Sbjct: 205  ETEEGLEKWLPPLKEHLGLSLAHAKSSLQRAGKLCNRPGGPLAYENRLLEDLEQVENLES 264

Query: 56   ASQTQCIEERFSLLSSFFLT-----QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
                   +                 +    +     Q + KK+ +   K+ K+  E    
Sbjct: 265  LV-AGSWDALREAWQGLDFKRLPAVKDCDEELKEQVQALRKKAKEALSKIGKTFFERSAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA--- 167
                   ++        +L       Y +AKK   +LDF DL  +   +L   D      
Sbjct: 324  DYLREIGELAPLIEVLTSLVARFAGEYGQAKKMYGLLDFNDLEHHCLQILMAEDAPPGEI 383

Query: 168  ---WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                   ++     H+L+DE QD + +Q  ++  ++           +   LF VGD KQ
Sbjct: 384  IPSEAAREVRARYEHVLVDEYQDINPVQDAILTLVSRQG-------ETTPNLFMVGDVKQ 436

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE-- 282
            SIY F   +P   L   R         G+K   + L  +FR    ++T V+ +F      
Sbjct: 437  SIYRFRLGDPGLFLERYRRYPA---EKGKKERKLLLSKNFRCRHGVVTAVNYLFRQLMTT 493

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             A  L  D    +   +         ++   V      +            D      + 
Sbjct: 494  QAAELEYDREAELVCGAHYPEPSQECKISGLVDVHLLEREQDGDHD-RQGDDEGEDLDAL 552

Query: 343  SILARRIAYTISNMIGT------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
               A  IA  I  ++                 R +  +DI++L+R   ++         +
Sbjct: 553  EREATVIAGQILVLLNGPDGARYVFDKEEKAYRPVTYRDIVILLRATSNSAN---RLVEI 609

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
               + I    +          ++ +++L + + +   D+    +L+SPL   + +D+  +
Sbjct: 610  LARHGIPAYADLSSGYFAATEVETMLSLLQVVDNPRQDIPLAAVLRSPLVGLTVEDLAAV 669

Query: 457  CTQRHETETVYEYIQKFANCGI----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                   +  ++ +   +         K    +  +     +A+  +   F T +     
Sbjct: 670  RQAGERNDDFFDAVLAASQQQFPGLSEKLTDFLTTLERWRTLARRETLATFITAVYRESG 729

Query: 513  GRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHS 566
                      G +    L    +   + ++ +   L   +S +EQ           RA  
Sbjct: 730  YSDYVAGLPDGAQRQANLRALFSRARQFDRFARQGLFRFLSFIEQLRRSGEDLGTARALG 789

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
               N VRIM++H +KGLE PVV L D G          +M +   L   P I     + +
Sbjct: 790  EKENVVRIMSIHKSKGLEFPVVILGDLGKTFNFQDQRSEMLVHRRLGLGPLIVEPEKKLR 849

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE------------- 673
              +     L    +  T+ E  R+LYV +TRA +QLI+   +   ++             
Sbjct: 850  YPSLPYLALKIMGEAETRAEEMRVLYVALTRAREQLILVGSARGLDKHLESWRQLLAHCG 909

Query: 674  ------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE---WSTHHPENTPL 724
                  + +  RT+ D +  +      V+    T +    E   +    W         +
Sbjct: 910  EQLPASELTRARTYLDWLGRALIRHGDVEGRTETYTWQAGEESRFRLTVWDRESLSEIAV 969

Query: 725  ERE-------------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID-- 763
            +RE                   +T   L +E +       P    ++ P  L+ S +   
Sbjct: 970  KREGEEEYTKRDAILSLRRVKVDTADDLREEIRTRLAYKYPYAR-LDLPAKLSVSELKRR 1028

Query: 764  -----------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFI 805
                             +  +       +      RG++ H++LQ +  +L   +R    
Sbjct: 1029 FSELEEEEGEKKAFTPTSWSRPAFIQQKAGLSPAERGILYHQVLQHLDLSLSLDERGIEG 1088

Query: 806  TSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTA--MSCDSYSEVSVSGKINC----- 857
              +  + A +   +    L    I     +           + Y E   +  +       
Sbjct: 1089 QIHYLQKAGVLAEEATDYLDPGLIAAFFTSEAGRVVQKYRSEVYREWPFTLSLPAAEIAT 1148

Query: 858  --PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
                + +II G ID +  + Q   + +YKT       +  +   +  QL  Y + ++   
Sbjct: 1149 GNGDESLIIQGIIDLLVRTPQGFVVIDYKTDRLPGGGLNELAKRYEEQLRYYARAVETIL 1208

Query: 916  PNKSLVCLLIYVSEPKVFII 935
                    L   +  +   +
Sbjct: 1209 SVPVCGAYLYAFAAGESVRV 1228


>gi|311029443|ref|ZP_07707533.1| ATP-dependent nuclease, subunit A [Bacillus sp. m3-13]
          Length = 1255

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/1059 (13%), Positives = 341/1059 (32%), Gaps = 143/1059 (13%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQA 56
            F +        + +++        S + K + +++E G P          L +   LQ A
Sbjct: 213  FSIDELPFISTLKREMKLQFLGAESLLEKAMKITLEPGGPAPRADNIEQDLAQLHRLQAA 272

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN- 115
                   + + ++     ++  T + +   +E+ ++   ++   K               
Sbjct: 273  L-NTSWGDLYEVMQELDFSRAKTCRGDEYEKELIERWTKVRNDAKAMVQGIKDELFSRRP 331

Query: 116  ------TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV---- 165
                    ++       + L K     +   K+   ++DF DL     ++L   +     
Sbjct: 332  ESFLKDLEELAPVMGTLVDLVKRYGVEFSLMKQDKGLVDFPDLEHLCLNVLTTFNEGKVE 391

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             +    +       +++DE QDT+++Q  +++ +T++             +F VGD KQS
Sbjct: 392  RSEAALRYQSTFKEVMVDEYQDTNMVQEAILKLVTKES-------EESGKMFMVGDVKQS 444

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284
            IY F  AEP   L + +     A  +G     I+L  +FRS  ++L   + +F       
Sbjct: 445  IYRFRLAEPFLFLSKYKRFDTDAKESGL---RIDLNKNFRSRPEVLDATNFIFKQIMGET 501

Query: 285  -QGLSEDSTTTIRHRSSR----IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
               +  D    ++  ++       +   + L  +  S         +    +      + 
Sbjct: 502  VGEIDYDDDAELKFGAAYYPEAADRESELLLLNRSSSVAGEDEELSESEDNTTGFDKVEL 561

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFL 396
             +A + A+ IA  I  +I +     +      R +  +D ++L+R     P      +  
Sbjct: 562  ETAQVEAKMIAQKIKQLIQSGYEIFDKDRKVMRPVTNRDFVILMRSMPWAPQFMEEFKQE 621

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 + +  N      +   +  L++L + I +   D+    +L+SP+     +D+  I
Sbjct: 622  ----GLPLYANLSTGYFEATEVAILLSLLKIIDNPYQDVPLASVLRSPIVGLDSNDLATI 677

Query: 457  CTQRHETETVYEYIQKFANCGISKFQH---------VIKYIHELIHIAQFCSPHDFFTLI 507
              Q+    + YE +  F        +            + +      A+  +  +    I
Sbjct: 678  RIQQKRG-SYYEALMAFMEKAPDSLEEQELAKRVRLFYQMLQSWRTAAREGALSELIWQI 736

Query: 508  LGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561
                           G +    L    +   + E  S+  L   +  +E+          
Sbjct: 737  YQDTHFFDFVGGMPGGKQRQANLRALYDRARQYESTSFRGLFRFLRFIERMQERGEDLGA 796

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             RA     + VR+MT+H++KGLE PVVF+     Q           +   L         
Sbjct: 797  ARALGEQEDVVRLMTIHSSKGLEFPVVFVAGLSRQFNMMDLNNSYLLDKELGFGSKYVNA 856

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK------- 674
              +      +   L +  K     E  R+LYV +TRA ++L +        +        
Sbjct: 857  KLRITYPTILQLALKRKAKAQLIAEEMRVLYVALTRAKEKLYLVGTVKDFEKSQLLWSEH 916

Query: 675  ------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINK---------------- 706
                        ++  +++ D V  +    +  + ++  +                    
Sbjct: 917  VSHENWLLPDYVRAGAKSYMDWVGPALVRHKDAEVLRGDSLAGTKQEDIANHPTSWKISV 976

Query: 707  ---DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK------LFSPIKNDINEPYIL 757
               ++ +    +    EN  LE+ +  +Q+  E     +         P K         
Sbjct: 977  TNVEQLLQGIEAEKEAENLLLEKVKRGEQVDIESPYKARVAEQLTWSYPYKEASIHRSKQ 1036

Query: 758  NPSTIDTKGK--------------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
            + S I    +                                   G  +H ++Q +    
Sbjct: 1037 SVSEIKRMREQQDPYADNTLVQTERRYFLDRPAFLQKKKLSPSEIGTAMHAVMQNLDLSA 1096

Query: 798  EHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYSEVSVSG 853
                ++++ S   +    +L  A++   +   +I      P+      +   + EV  S 
Sbjct: 1097 ITIDRDYVQSQVMEMVQKELITAEQANVIDFDAIVSFFTTPVGKRMQQAEHVHREVPFSF 1156

Query: 854  KI---------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIP 897
             +         +  ++ I++ G ID +   ++ + + +YKT            +    + 
Sbjct: 1157 ALQENEFFEQMDLKEETILVQGVIDCLLEDEEGLVLIDYKTDTITGRFSNGFEEAEPVLR 1216

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
              +  Q+++Y + ++  +  +     L +     +  + 
Sbjct: 1217 NRYKDQVALYARAVEGIWKKELKEKYLYFFDGNHLVKMD 1255


>gi|331092164|ref|ZP_08340994.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401936|gb|EGG81510.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1197

 Score =  380 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 146/929 (15%), Positives = 311/929 (33%), Gaps = 107/929 (11%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +  + + +   +E  K++ DL   + K+           +  K  ++    + L K    
Sbjct: 288  KSVSEELSAFVKETRKQTKDLLTDIVKTYLFQPIEEMAVDMAKTKETMEELVFLVKEFGC 347

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLI 191
             Y EAK+   ++DF D+      +L   +    + + +  +  +    ++IDE QD++L 
Sbjct: 348  LYTEAKRSRNLIDFGDMEHLALQILTVEEGDAILPSPVAREYQKRFKEVMIDEYQDSNLT 407

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q  ++                   +F VGD KQSIY F  + P+  + +           
Sbjct: 408  QEAIL-------TSVSTVGCGKNNIFMVGDVKQSIYRFRLSRPELFMEKFDTY----DIE 456

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  I+L  +FRS  ++L   + +F          +  D    +   +    + G   
Sbjct: 457  DSTKQRIDLHKNFRSRREVLDSTNFIFEQIMTKGLGKVEYDDKAALYVGADYKEKEGNET 516

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GK 367
                +    D +   Q            +E++  + AR +A  I  ++    +     G+
Sbjct: 517  EVLVIDVDMDGESEEQV-----------EETARELEARAVARRIKELMAQHRVQDKQTGE 565

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R I+ +DI++L R  K       +   + N   I      +    +   I+ ++   R 
Sbjct: 566  FRQIRYRDIVILTRSLKGWT---DVFARILNREGIPTYTGSKEGYFETQEIQTVLNYLRV 622

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI----SKFQH 483
            + +   D+  V +L S +  FS +++ +I T   E        +           ++ + 
Sbjct: 623  LDNPNQDIPLVSVLTSGMGKFSGEELAEIRTLDKEVPFYRCVRRYIKEGKNTLLANRLEK 682

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKG-RQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            +   I     +  + + H+    ++       +  +   G +    LD  L      E  
Sbjct: 683  LFAQIEYFREMIPYTAIHELLWRVIEETGYGYETAVMAGGEQRKANLDMLLEKAKAFEGT 742

Query: 543  SYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            SY  L   +  +EQ                  + VR+M++H +KGLE P+VF+     + 
Sbjct: 743  SYKGLFNFVRYMEQLKKYDVDYGEANIADEQADAVRLMSIHKSKGLEFPIVFVSGMNKRF 802

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   ++     L           + KS   +   + + +      E  R+LYV +TR
Sbjct: 803  NKQDITGEIVTHAELGIGLDRVDLEKRMKSPTFLKKTMQREVMLENIGEELRVLYVALTR 862

Query: 658  ASDQLIICKHSNTSNEK-------------------KSNQRTWYDMVYDSFHNDERVKKI 698
            A ++LI+    +   +K                    S   +++D V  +       +++
Sbjct: 863  AKEKLIMTGTLSQVEKKFMSYAVLENREEKQLPFTMLSKAGSYFDWVLPALLRYPEQRRV 922

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM-------DEQKIPKKLFSPIKNDI 751
               + IN +E +  E           E+ +             +  +       P +N  
Sbjct: 923  GKVSVINLEELVQKEVQEETGAEYTKEKLQNWDTEQIFDSDFKERLEKQFSYRYPYENQN 982

Query: 752  NEPYILNPSTIDTKGKTNLES-------------------LLSDNQTFNRGLIIHKLLQV 792
            +       S +  +     ES                        +   RG   HK+L++
Sbjct: 983  DLKLKFTVSELKKRKNLAEESGELLIREEEIIPILPKVLTEEEGIKGVLRGTTYHKVLEL 1042

Query: 793  IFTLPEHKRKNFIT--SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS--- 847
            +    E+  ++      + T+  ++    +    +  +   L    +   M   S     
Sbjct: 1043 LDFTKEYTYESLKEYLEHLTEEGRISEEMKKCVRIKDLLTFLRT-DIAERMKKCSKCGKL 1101

Query: 848  --EVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
              E      +           ++ ++I G ID     +  + + +YKT     +    + 
Sbjct: 1102 FKEQPFVLGVPAKEIYPEEKIEETLLIQGIIDVWLEEEDGLVVVDYKTDRV--KNGLELK 1159

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
              +  QL+ Y + L+     K +   +IY
Sbjct: 1160 AKYSGQLNYYGEALERL-TGKKVKEKIIY 1187


>gi|255655059|ref|ZP_05400468.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-23m63]
 gi|296451046|ref|ZP_06892788.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08]
 gi|296880601|ref|ZP_06904563.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07]
 gi|296260053|gb|EFH06906.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08]
 gi|296428555|gb|EFH14440.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07]
          Length = 1275

 Score =  380 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/1042 (15%), Positives = 344/1042 (33%), Gaps = 165/1042 (15%)

Query: 33   KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------ 86
            + +    E  +    K    + QA   +  +E +  +SS          K I        
Sbjct: 243  EELETFAEKLSAEYKKIVD-ISQAC-NKSWDETYKKMSSMSFENYVKGVKRISKDAPSYI 300

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-------YLNAHYEE 139
            +E  +K+  +++K KKS +  +      +   + +       + K            Y  
Sbjct: 301  KESKEKAKTIRDKTKKSLESIVSATFNKDNDSIREEIKYLYNIVKPISNIVLRFEEEYSN 360

Query: 140  AKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             K++  ++DF D+     ++L         V + I      E   I IDE QD++L+Q  
Sbjct: 361  KKREKGIIDFNDIEHFALNILTDVDEKGNIVPSDIAVGYRNEFYEIFIDEYQDSNLVQEV 420

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            +++++          ++     F VGD KQSIY F  A+P+      +         G  
Sbjct: 421  LLKAVA---------NTETPNRFMVGDVKQSIYRFRQAKPEL---FLQKYNNYNDKKGSS 468

Query: 255  FSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQ-------V 305
               I L  +FRS  +++  V+ +F     EN   +       +   ++            
Sbjct: 469  HRKIMLYKNFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNLGANFEMDTDEKSIIG 528

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWT-----SYFDSLPQESSASILARRIAYTISNM---- 356
            G  ++                +        S  +   +  +  + AR +   I ++    
Sbjct: 529  GATEIHLIQKDNKLDDDIINDKDDRTNNKESEIEEEEKLDNIQLEARMVGKIIKDLMKVN 588

Query: 357  ----IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                +        G  R ++ +DI++L+R       +         +  I    +     
Sbjct: 589  EEGKLQKVYDKGIGGYRPVEFRDIVILLRATSAWAPV---FADELMNMDIPTYADVGVGY 645

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----- 467
             D + IK +++L + I +   D+  + +LKSP+F F+ +D+  I  Q  +          
Sbjct: 646  FDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKST 705

Query: 468  -------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                         E     +   I+K +  +  + E    + + S  +F   +       
Sbjct: 706  AEYNEFKDSQNENESEFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYY 765

Query: 515  QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSAN 568
                +   G++    L        + E+ S   +   ++ +E            +    N
Sbjct: 766  AYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGEN 825

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             N VRIM++H +KGLE PVV     G    +    K +    +L   P    +  +    
Sbjct: 826  ANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRISFP 885

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQR 679
            +     L   +      E  R+LYV  TRA ++LII              ++  + S+  
Sbjct: 886  SIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGVENSDTI 945

Query: 680  TWYDMVYDSFHNDERVK------------------KIKLTNSINKDEWIAYEWSTHHPEN 721
            + Y+++      D  +                    +      +K     ++ +    E 
Sbjct: 946  SQYEILKGKNFLDWIMPCVLKHRDLSNLLDEVGLDAVFSVEHNSKWYGKLWDKNDILVEK 1005

Query: 722  TPLEREETIKQLMDEQKIPKK-------------LFSPIKNDINEPYILNPSTIDTKGKT 768
               E +E+I++++++  +                   P +    +P  ++ + I      
Sbjct: 1006 KNNEEKESIEKILEKIDVDSPDSDYYNEIEEKLNYIYPYEFSTRKPATISVTEIKKIQNN 1065

Query: 769  ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                    E          RG I+H +++V+         +  +
Sbjct: 1066 YEEELINTIFEQKVILKKPLFIQNEEERDKISGAERGTIVHLVMEVLDLKNVSNVNDIKS 1125

Query: 807  SYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSY-SEVSVSGKINC------ 857
                  +K    ++  +++    I +  E+ +    ++ +    E S+  ++N       
Sbjct: 1126 QIRGFVSKGIITEKQASIVNPYKIYKFFESNIGKRMLNAELINREKSIYAQVNMKDIYIY 1185

Query: 858  ------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
                         ++ +++ G +D        I + +YKT     + I  I   +  QL 
Sbjct: 1186 EKLINNDDKKLYDEESVMLRGIVDAYFEEDNQIVLVDYKTDFVNEENINQIIEKYKKQLD 1245

Query: 906  IYEKILKDSYPNKSLVCLLIYV 927
            +Y  I++     KS+    IY+
Sbjct: 1246 LYADIIETL-TGKSVKEKCIYL 1266


>gi|251778187|ref|ZP_04821107.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str. 'BoNT
            E Beluga']
 gi|243082502|gb|EES48392.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str. 'BoNT
            E Beluga']
          Length = 1244

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/949 (15%), Positives = 299/949 (31%), Gaps = 126/949 (13%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            ++I  +       L +        +   N  K +        L       +   KK+  +
Sbjct: 303  KQIRDQVKKKISALIEGTFIATPDKMLDNIIKSYPYINQLTELTSEFIDRFNAKKKEKNI 362

Query: 147  LDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            LDF DL      +L     + + V + I  K       +L+DE QD++ +Q  +I  ++ 
Sbjct: 363  LDFNDLEHLCLKILIEDNEENQIVPSTIAQKFKDYFEEVLVDEYQDSNNVQEAIIELVSR 422

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +S    +F VGD KQSIY F  A+P+  + +                 I+L 
Sbjct: 423  K-------NSENPNVFMVGDVKQSIYKFRQAKPELFIDKYNSYSLD----KGTNRKIQLY 471

Query: 262  LSFRSTADILTVVDKVFSIPEN--AQGLSEDSTTTIRHRSSRIGQVGTVQLW--EQVVSQ 317
             +FRS  +++  V+ +F    +     L       +   +S   +     +      V  
Sbjct: 472  KNFRSREEVINGVNYIFKSVMSKTVGELEYTDVEALNLGASYPEKKNADDIIGGPIEVHI 531

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRV 370
             D   N ++   +       +    ++ AR I   I+++I               G+ R 
Sbjct: 532  LDRSDNKEENDESKLQAEEEEIGDVNLEARIIVKRINDLISKKDGSKFKVLDKDTGEYRD 591

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++ KDI++L+R  K+      +         I V  +      + + I+ +M+L + I +
Sbjct: 592  LKYKDIVILLRATKNWS---EVLLDELGLAGIPVYADTGSGYFESIEIRTIMSLLKVIDN 648

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ-----KFANCGISKFQHVI 485
               D+  + +L SP+   S +++  I     E       I+       +     K ++++
Sbjct: 649  PMQDVPMLSLLISPIIGLSAEELTDIRLIDKEKYFYENIIKISTEKLISEELQEKCEYIL 708

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSY 544
              I +    + +    +F   +               G      L        +  + S+
Sbjct: 709  SSIDKWRRKSIYMPIDEFIWYLYMDTAYYGYVGAMPNGVLRQANLKILFQRARQFSETSF 768

Query: 545  SSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              L   I+ +             +    N + VRIM++H +KGLE PVVFL   G     
Sbjct: 769  KGLFNFINFINKLTKSSGDMGSAKILGENEDVVRIMSIHKSKGLEFPVVFLAGCGKNFNL 828

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 K+     L   P       ++         + K +K  T  E  R+LYV  TRA 
Sbjct: 829  MDLNNKILYHEELGLGPEYINLENRTSITTLPKEAIKKRMKLETLSEEMRVLYVAFTRAK 888

Query: 660  DQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDS------------ 688
            ++LII      + +                        +++ D +  +            
Sbjct: 889  EKLIITGAVRNAEKSIEKWINSAVLDKDVVLPYEISKGKSYLDWIGMALCKHKDGKILRK 948

Query: 689  --------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                      +D  + KI + N    D +   + +    +      ++ + + +  +   
Sbjct: 949  KLGFSSEMCKDDLSMWKISIWNKYELDMYDELDENQEELDVKISILDKDVNKKVKSEVYR 1008

Query: 741  K-KLFSPIKNDINEPYILNPSTIDTKGK------------------------TNLESLLS 775
            +       K        ++ S +  +                                  
Sbjct: 1009 RLGYEYEFKESTKLTSNISVSDLKRRNMDDNIDTLEIFDLEEEDNKNKDVITPKFLQEKK 1068

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLE 833
               +  RG  IH  ++ I        K          +   +   +        I    +
Sbjct: 1069 GISSAERGTAIHFAMKKIDFSKVGTLKEIKEQLNKLYEEEFILQEEYNSINPYKILSFFK 1128

Query: 834  NPMMTTAM-----SCDSYSEVSVSGKIN-----------CPKKDIIISGRIDQISISQQN 877
            + +    +         Y EV    +I+              + I + G ID        
Sbjct: 1129 SNLGKKMLYVYNEGGKIYREVPFYTEISSLELDESLPQKYANEKIRLQGIIDCFFKCDDE 1188

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            I + +YKT +   +  E     + +QLS Y + +      K +    +Y
Sbjct: 1189 IILLDYKTDYV--ENEEEFKEKYKSQLSYYSEAVFKI-TGKKVNKKYLY 1234


>gi|147677999|ref|YP_001212214.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum
            thermopropionicum SI]
 gi|251764536|sp|A5D1P3|ADDA_PELTS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|146274096|dbj|BAF59845.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum
            thermopropionicum SI]
          Length = 1269

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/1044 (14%), Positives = 311/1044 (29%), Gaps = 146/1044 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTI---------LKKAQTLQQASQTQCIEERF 66
            + +          +D+   + ++ E G P               + LQ         E +
Sbjct: 230  LKQAAEIELAGARADLEAALRIAREPGGPQAYLANLEQEHDLVCRLLQSCRTNAPWAELY 289

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKE----KLKKSQDEFIKIRDRFNTYKMFKS 122
            S       +     +K     ++  ++ + +E    K+ + +  +  +        + + 
Sbjct: 290  SYFKEVVFSPLKQCRKEDADLKLAGQARNFRESAKKKVMQVKSRYFSLPPEDLCADLRRM 349

Query: 123  T---LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQ 175
                     L +  +A Y +AK    V+DF DL      +L ++     V + + +++ +
Sbjct: 350  APLIKELAGLVREFDATYRKAKAARGVVDFNDLEHYCLQVLAEKGPSGAVPSQVAHELQE 409

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +L+DE QD + +Q  +++ ++               LF VGD KQSIY F  AEP 
Sbjct: 410  KFVEVLVDEYQDINAVQETILQMVSRKG-------EGQSNLFMVGDVKQSIYRFRLAEPG 462

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
              L++           G +   + L  +FRS   +++ V+ +F          ++  S  
Sbjct: 463  LFLKKYASFSA--GTGGGQGRRLALTANFRSRQGVVSAVNFIFKQIMTPAVGEMAYGSDA 520

Query: 294  TIRHRSSRIGQVG-------TVQLWEQVVS-------QHDSQCNPQQESWTSYFDSLPQE 339
             + + +               V+L               D           +  +   + 
Sbjct: 521  MLVYGADYPPVPEGQGNYEEAVELHLVERGPAGKDGGGDDPAGEEADGGVEAVEEIEEEL 580

Query: 340  SSASILARRIAYTISNMIGTDTIFSN---------GKKRVIQAKDILVLVRKRKDTPLIT 390
             +    AR +A  I  ++G      +          K R +  +D+ VL+R    T    
Sbjct: 581  EAGQKEARLVARRIKELLGGSPGGEHALEIYDRELKKYRPLTYRDVAVLLRA---TAGYA 637

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                       I           +   ++ +++L + I +   D+    +L+SP      
Sbjct: 638  NSFVEEFRREGIPAYAELSTGYFESTEVETVISLLKVIDNPRQDIPLAGVLRSPAVGLKA 697

Query: 451  DDIFKICTQRHETETVYE---YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             D+ +I       +                  +    +K + E   IA+  +  D    +
Sbjct: 698  GDLARIRLASPRGDFYDAVVAASLAGQGELSERLADFLKKLEEWRTIARQGTLADLIWAV 757

Query: 508  LGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTI 561
                           G +    L    +   + E  ++  L   +  +E+          
Sbjct: 758  YRDTGYYDFTGCLPGGGQRQANLRALHDRARQFETTAFRGLFLFLRFIERLREGGRDFGA 817

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             R  S   N VRIM++H +KGLE PVVF+   G         K +     L   P +   
Sbjct: 818  ARLLSEKENVVRIMSIHKSKGLEFPVVFVAGLGRNFNFRNLNKAVLFHKDLGLGPQLVDA 877

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-------------- 667
              +          L   LK     E  R+LYV MTRA ++LI+                 
Sbjct: 878  EARVTRPTAAKLALKHRLKMEALAEEMRILYVAMTRAQEKLILVGSARNLPGCARRWCGP 937

Query: 668  -----SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
                     +   +   T  D +  +         I+   +  ++               
Sbjct: 938  AGTAGWALPDGFLAGAGTCLDWLMAALARHRDGAAIRELAACAEEPPAEVAADRSRWRVF 997

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEP------YILNPSTID------------- 763
              +      ++ +E  +  K+      +   P        L  S                
Sbjct: 998  FSDSRGRSAEMAEEPVLLAKVRRMEPLEPAGPLAGMIKARLEWSYPAIAVLGRPAKAAVT 1057

Query: 764  --------------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                                      T G+               G  +H ++Q +  L 
Sbjct: 1058 ELKRRFDQLAAGEEQYGEGHFESFRLTAGRPLFMQEKRGLTAAEAGEALHLVMQHL-DLT 1116

Query: 798  EHKRKNFITSYCTK---NAKLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSG 853
                   + S          L P +        I      P+    ++      E+  + 
Sbjct: 1117 GSLDITAVRSQIEDMVWRELLTPEQAAAVPAEKIAAFFAGPLGRRLLAGFQVLRELPFTM 1176

Query: 854  KI----------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
             +            P + +++ G ID +        + +YKT        E     +  Q
Sbjct: 1177 AVQAAEIYPELVPYPGEAVLVQGVIDCLVDEGDGYLLLDYKTGKRPLGRPEEAARRYCGQ 1236

Query: 904  LSIYEKILKDSYPNKSLVCLLIYV 927
            L+IY + ++     + +    +Y+
Sbjct: 1237 LNIYARAVESIL-GRKVKEKYLYL 1259


>gi|210617937|ref|ZP_03291823.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787]
 gi|210149076|gb|EEA80085.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787]
          Length = 1217

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 142/1009 (14%), Positives = 309/1009 (30%), Gaps = 141/1009 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTI----LKKAQTLQQASQTQCIEERFSLLSSFFL 74
            D    PY     +   +    +  +             ++ A      ++  S   + ++
Sbjct: 239  DCEDGPYMYRETLEADLQNIEKINSAEDFLEMSNLISKVKWARLATNRDKSVSEELAAYV 298

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
                   K  +   + +   D  E+L +                   +    + L     
Sbjct: 299  KGVREEVKKTVASVVEQYFFDAPEELYQDM------------LSAKSNMEVLVQLVNDFA 346

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSL 190
              + E K    ++DF D+      +L   +    +      +  +    ++IDE QD++L
Sbjct: 347  DTFAEKKTGKNMIDFGDMEQFALRILTLEEGGKLVPSKAAKEYQERFAEVMIDEYQDSNL 406

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            IQ  ++                   +F VGD KQSIY F  + P+  + +          
Sbjct: 407  IQEAIL-------TSVSKVSKGSYNIFMVGDVKQSIYRFRLSRPELFMEKFNTYS----L 455

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   I+L  +FRS  ++L   + +F         G++ D    +   ++   Q G  
Sbjct: 456  EESDKQRIDLHKNFRSRREVLDSTNFIFEQVMTKGLGGIAYDDKAALYVGAAYEEQAG-- 513

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--G 366
                     ++++       +    D   +E++  + AR +A  I  ++G   +     G
Sbjct: 514  ---------NETEVILVDTDFEDEDDQKMEETNRELEARAVARRIKELVGHHMVLDKETG 564

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            + R  +  DI++L R  K       +   + N   I      +    +   I+ ++   R
Sbjct: 565  EYRTARYSDIVILTRSLKGWT---DVFTNILNREGIPAYSGSKEGYFETREIRTILDYLR 621

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----ETETVYEYIQKFANCGISKFQ 482
             + +   D+ F  +L S     + +++  I  +         T++            +  
Sbjct: 622  ILDNPRQDIPFAAVLTSCFGKLTSEELANIQCEGEGKTFYERTLFYLENGSDENLKERIT 681

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQ 541
             +++          + + H     I+          S   G +    L+  +   +  E 
Sbjct: 682  DLLRKYERFRRKVPYTAIHALLWDIIEETGYGDYVASLPSGEQRKANLEMLVEKAVSFES 741

Query: 542  NSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             SY  L   I  +EQ                  + VR+M++H +KGLE P+VF+     +
Sbjct: 742  TSYKGLFHFIRYIEQLHKYDVDYGEASVLDEQADTVRLMSIHKSKGLEFPIVFVSGMSKR 801

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              +      + I P             ++K+   +   + + +      E  R+LYV +T
Sbjct: 802  FNTQDIKGSIVIHPEFGVGIDAVDVERRTKAPTLLKRMIQREVLMENAGEELRVLYVALT 861

Query: 657  RASDQLIICKHSNTSNEK-------------------KSNQRTWYDMVYDSFHNDERVKK 697
            RA ++LI+    +   +K                    +   +++D V  + +       
Sbjct: 862  RAKEKLIMTGTISNLEQKIRSYEGLRSHEETELTFSRLTKANSYFDWVLPALYRHASFAP 921

Query: 698  I--------KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK------- 742
            I           N +   +     +     E    E  E +     ++ +          
Sbjct: 922  ILETYNIGAPFMNPLYDRDVPIRVYKMGIGEIVAGEVAEELSGQYTKELLHNWDDTRTYD 981

Query: 743  ------------LFSPIKNDINEPYILNPSTIDTKG-------------------KTNLE 771
                           P + +      +  S +  +                         
Sbjct: 982  EQMKEQLEIQFGYQYPYERERKLKQKMTVSELKKRAYLEEEAGELVFDEADVVPLLPKFL 1041

Query: 772  SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS--IT 829
                +    +RG   H+LL+++    ++           +      ++E    +    I 
Sbjct: 1042 QEEEELTGASRGSAYHRLLELLDFSKKYDEVTLKELIEEQKRSGKLSEEMCTSIREKDIL 1101

Query: 830  RLLENPMMTTAMSCDSY----SEVSVSGKINCP--------KKDIIISGRIDQISISQQN 877
            R L  P+              +E      I+          ++ +++ G ID        
Sbjct: 1102 RFLNTPVGERMHRAAVRGTLWAEQPFVLGIDADELYKGESLEETVLVQGIIDVWFEEDGE 1161

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            + + +YKT        E +   +  QL  Y + L+     K +   +IY
Sbjct: 1162 LVVLDYKTDRVFK--EEILREKYHTQLDYYARALEQL-TGKCVKEKIIY 1207


>gi|167038394|ref|YP_001665972.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|320116798|ref|YP_004186957.1| recombination helicase AddA [Thermoanaerobacter brockii subsp. finnii
            Ako-1]
 gi|251764573|sp|B0KDB7|ADDA_THEP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|166857228|gb|ABY95636.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|319929889|gb|ADV80574.1| recombination helicase AddA [Thermoanaerobacter brockii subsp. finnii
            Ako-1]
          Length = 1233

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/1002 (16%), Positives = 352/1002 (35%), Gaps = 131/1002 (13%)

Query: 36   SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95
               +E       ++A  ++Q  Q     E  + + +    +     K+   + + ++  +
Sbjct: 244  EAGLEGYFHAFQREAYEIEQLLQYDNWNEFKNHIQAIEFERLPNAGKD-ANKNVKEEVSN 302

Query: 96   LKEKLKKSQ---------DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++K+K            D   +I+D       +    A   L    +  Y+E K++  +
Sbjct: 303  IRKKVKDKIKEIKEKFFSDSVEEIKDEIKAL--YPIMEALADLILLFDKKYKEKKREKGI 360

Query: 147  LDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            +DF D+      +L + D       + +     ++   I +DE QD++LIQ E++  +  
Sbjct: 361  IDFNDIEHFALQILTEIDEEGAVNPSEVALHYREKFEEIFVDEYQDSNLIQEEILSIIAR 420

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +         +P   F VGD KQSIY F  A P     +         + G+K   I L 
Sbjct: 421  E---------NPPNRFMVGDVKQSIYRFRQANPYIFFEKYNSYS---LDTGEKNQKILLY 468

Query: 262  LSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQV------GTVQLWEQ 313
             +FRS  +++  ++ +F      N   ++      + + +            G V+L   
Sbjct: 469  KNFRSRIEVIEAINYIFKKIMSKNIGEVNYTEEEKLNYGAEYEIPPEDSVTGGAVELHLI 528

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQE----SSASILARRIAYTISNMIGTDTIFSNGK-- 367
               + + +   ++E      D   +E        + AR +A  I  +   + +  +    
Sbjct: 529  EKQKVEEEVEEKEEEKNEEKDFEEEEEDLIDDIQVEARVVAERIKQLFSQNFMVYDKNIK 588

Query: 368  -KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              RV+  +DI+VL+R    T     +         I    +      D   IK +++L +
Sbjct: 589  SYRVVDYRDIVVLLRA---TDRWAPVFLEELTQAGIPAFADTGTGYFDTTEIKTIISLLQ 645

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI--SKFQHV 484
             I +   D+  + +L+SP+F+F+E+++  +  +  E        +          K ++ 
Sbjct: 646  VIDNPMQDIPLLAVLRSPIFSFTEEELIDLRLEDMEKTIYEAIKKASQREDELGEKAKNF 705

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543
            +  + +    A +    +F   +           +   G +    L        + E+ S
Sbjct: 706  LDTLKKWQEKAVYMPVDEFLWYLYKDTGYYSYVAAMPQGVQRQANLRILFERAKQYEETS 765

Query: 544  YSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +  L   I+ +             +    N N VRIM++H +KGLE PVV +   G Q  
Sbjct: 766  FKGLFNFINFINRLKVSSGDMGSAKIVGENENVVRIMSIHKSKGLEFPVVIVAGLGKQFN 825

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +    +K+     L   P    +  +    + +   +   +K     E  R+LYV +TRA
Sbjct: 826  TKDLYQKILYHHFLGLGPEFVDFRRRISYPSIVKEAIKYKIKLEGLSEEMRVLYVALTRA 885

Query: 659  SDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKL 700
             ++LI+   +    +                       +++ D +  +    + ++ ++ 
Sbjct: 886  KEKLILVGSARDIKKNVRKWANAAILQEKVSEYDILNGKSYMDWIGAAVIRHKDLEPLRE 945

Query: 701  TNSI---NKDEWIAYEWSTHHPENTPLERE-------------------------ETIKQ 732
               +    +++   +E    + ++  LE+E                         E  ++
Sbjct: 946  FAGVSLSEEEDASKWEVKLWNKKDVLLEKEKNDKVDVVERLRSLDLDAHYSEFYKEVERR 1005

Query: 733  LMDEQKIPKKLFSPIKNDINEPYIL-----------NPSTIDTKGKTNLESLLSDNQTFN 781
            L       K  + P K  + E   +           +    +                  
Sbjct: 1006 LNYVYPYEKACYLPAKLSVTEVKRILNAEVVDEDTTSIFEREVLKTPIFLEKKKGLTAAE 1065

Query: 782  RGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMM 837
            +G+ +H ++Q +     L     K  I     +   +   ++ K + +  I    +  + 
Sbjct: 1066 KGIAMHLVMQKLDLDKDLSLEGIKEQIKDMVDRE--ILTEEQAKEVNIHKIEGFFKTSLG 1123

Query: 838  TTAM-SCDSYSEVSVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFEYKT 885
               + S +   EV    K+               + I + G ID     +  + + +YKT
Sbjct: 1124 ERMLSSKNVKREVPFHIKLSSREIYKDLPEEYENEFIQVQGIIDCFFEEEDGLVLIDYKT 1183

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             +    ++E I   +  Q+ +Y K L++    K +    IY+
Sbjct: 1184 DYVQEGKVEEIKERYKVQIELYSKALENI-TGKKVKEKYIYL 1224


>gi|325843353|ref|ZP_08167936.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1]
 gi|325489382|gb|EGC91755.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1]
          Length = 1198

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/960 (16%), Positives = 324/960 (33%), Gaps = 108/960 (11%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
              L+    L+ A  +      +  L   F+    +   +   ++ +++   + ++ + S 
Sbjct: 262  QDLEYVNRLKDAMNS-----SYEALREAFMNTTLSRFPSAPKKDFDEEMNTICKEARDSF 316

Query: 105  DEFIKIRDRFNTY-----------KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
             + I+                   K  +   A   +    +  + EAK K  +LDF DL 
Sbjct: 317  KKRIEKIKEKYLTYSNKTHLIHFKKSQEVVEALAKMVLLFHERFSEAKLKRQLLDFSDLE 376

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
              T  LL +   +  + + I  +   I+IDE QDT+ +Q  +++++ +         S  
Sbjct: 377  WYTLRLLIQDGQATAVAFDIHAQFKEIMIDEYQDTNFMQESIVQAIAK-------IKSPE 429

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIY F  AEP     +  +      +   K   I+L  ++RS   ++  
Sbjct: 430  IPIFMVGDVKQSIYRFRLAEPSIFQGKYTMFS----DGNGKGHKIDLMKNYRSHQQVIDS 485

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +       R   +G+          V+   +Q            
Sbjct: 486  TNYIFKQLMDEPVGEINYDEAAMLRLGVLGE----------VNDPFNQNEVHLIDKLQVT 535

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLIT 390
            D     S+  + A  IA TI   + +     +   G+ R++  +DI++L+R         
Sbjct: 536  DDETDLSTVELEAHHIARTIKRWMDSKQEVYDRKLGRMRLLTYQDIVILMRSLSSVTTFQ 595

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + R     Y I +       L D + I ++++  + I +   D+  V +++SPLF F+E
Sbjct: 596  DVFR----QYHIPLFTEQNTDLFDSIEIINMVSCLKVIDNPYQDIPLVGLMRSPLFFFNE 651

Query: 451  DDIFKICTQRHETETV----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             ++  I      +       +            K +  ++ +      A+  S     TL
Sbjct: 652  RELSLIKVSSKASSFYELVQFYQNHGEDEFLKQKTKRFVEILERWRFEAKIQSLASLITL 711

Query: 507  ILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR-- 563
            I       +  +    G      LD F++     E ++   L   ++ +++     K   
Sbjct: 712  IYEQTLYYEFVMGLPHGYLRKANLDVFVDKARHYESSTKKGLYGFVNYIDRMQALGKHFG 771

Query: 564  ---AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                 +AN + VRIM++H +KGLE PVVF+     +           +            
Sbjct: 772  KAKTVTANEDVVRIMSIHKSKGLEFPVVFISQIQKKFNVQDEKGNYILHKKYGVAVKYID 831

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR- 679
                   +    + +   + +    E  RLLYV MTRA  +L+         +  S +  
Sbjct: 832  SQLSFTQKTIAQNVVASLIHREMLAEEMRLLYVAMTRAKSKLLFTGVFEVEKKLASLKEV 891

Query: 680  -----------------TWYDMVYDSFHNDERVKK-------IKLTNSINKDEWIAYEWS 715
                              + D +  +       ++       +  T   +   W    +S
Sbjct: 892  ITESGVRLPDSYRLKAVNYADWILPAILKHPDNQEIVATYLGVTPTCLEDASSWKIEIFS 951

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIK--NDINEPYILNPSTIDTKGK------ 767
                    ++ EE++ +        K   +  +    +      + S      +      
Sbjct: 952  QQQELEQSMKVEESLAKQPPVIDFEKIFSTRYEHQELVEINAKQSVSQRKLAEETPMFKG 1011

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813
                                      G  +H+ +Q +           +        K  
Sbjct: 1012 IPELRPQVAYDRPSFMREKKISGAEAGTALHQFMQHLPVMKNHTLESLQQVKERVIEKEM 1071

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPKKD---IIISGRID 869
                     +L   +    ++P+    ++      EV     +   + +   I++ G ID
Sbjct: 1072 MTEEMSSRIDL-GQVLEFTKSPLYEKIITALSVKKEVPFMTLVKVDEHEQSQILLQGVID 1130

Query: 870  QISISQQNIFIFEYKTH--HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             ++  +  ++I +YKT        + + +   +  Q+  Y K +K+ +P K + C + ++
Sbjct: 1131 LLAEFEDEVYIVDYKTDYIRDFEVQQQELKQRYETQMKYYSKAIKEIFPTKKVSCHVYFL 1190


>gi|293374973|ref|ZP_06621268.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909]
 gi|292646383|gb|EFF64398.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909]
          Length = 1198

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/960 (16%), Positives = 324/960 (33%), Gaps = 108/960 (11%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
              L+    L+ A  +      +  L   F+    +   +   ++ +++   + ++ + S 
Sbjct: 262  QDLEYVNRLKDAMNS-----SYEALREAFMNTTLSRFPSAPKKDFDEEMNTICKEARDSF 316

Query: 105  DEFIKIRDRFNTY-----------KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
             + I+                   K  +   A   +    +  + EAK K  +LDF DL 
Sbjct: 317  KKRIEKIKEKYLTYSNETHLIHFKKSQEVVEALAKMVLLFHERFSEAKLKRQLLDFSDLE 376

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
              T  LL +   +  + + I  +   I+IDE QDT+ +Q  +++++ +         S  
Sbjct: 377  WYTLRLLIQDGQATAVAFDIHAQFKEIMIDEYQDTNFMQESIVQAIAK-------IKSPE 429

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIY F  AEP     +  +      +   K   I+L  ++RS   ++  
Sbjct: 430  IPIFMVGDVKQSIYRFRLAEPSIFQGKYTMFS----DGNGKGHKIDLMKNYRSHQQVIDS 485

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +       R   +G+          V+   +Q            
Sbjct: 486  TNYIFKQLMDEPVGEINYDEAAMLRLGVLGE----------VNDPFNQNEVHLIDKLQVT 535

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLIT 390
            D     S+  + A  IA TI   + +     +   G+ R++  +DI++L+R         
Sbjct: 536  DDETDLSTVELEAHHIARTIKRWMDSKQEVYDRKLGRMRLLTYQDIVILMRSLSSVTTFQ 595

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + R     Y I +       L D + I ++++  + I +   D+  V +++SPLF F+E
Sbjct: 596  DVFR----QYHIPLFTEQNTDLFDSIEIINMVSCLKVIDNPYQDIPLVGLMRSPLFFFNE 651

Query: 451  DDIFKICTQRHETETV----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             ++  I      +       +            K +  ++ +      A+  S     TL
Sbjct: 652  RELSLIKVSSKASSFYELVQFYQNHGEDEFLKQKTKRFVEILERWRFEAKTQSLASLITL 711

Query: 507  ILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR-- 563
            I       +  +    G      LD F++     E ++   L   ++ +++     K   
Sbjct: 712  IYEQTLYYEFVMGLPHGYLRKANLDVFVDKARHYESSTKKGLYGFVNYIDRMQALGKHFG 771

Query: 564  ---AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                 +AN + VRIM++H +KGLE PVVF+     +           +            
Sbjct: 772  KAKTVTANEDVVRIMSIHKSKGLEFPVVFISQIQKKFNVQDEKGNYILHKKYGVAVKYID 831

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR- 679
                   +    + +   + +    E  RLLYV MTRA  +L+         +  S +  
Sbjct: 832  SQLSFTQKTIAQNVVASLIHREMLAEEMRLLYVAMTRAKSKLLFTGVFEVEKKLASLKEV 891

Query: 680  -----------------TWYDMVYDSFHNDERVKK-------IKLTNSINKDEWIAYEWS 715
                              + D +  +       ++       +  T   +   W    +S
Sbjct: 892  ITESGVRLPDSYRLKAVNYADWILPAILKHPDNQEIVATYLGVTPTCLEDASSWKIEIFS 951

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIK--NDINEPYILNPSTIDTKGK------ 767
                    ++ EE++ +        K   +  +    +      + S      +      
Sbjct: 952  QQQELEQSMKVEESLAKQPPVIDFEKIFSTRYEHQELVEINAKQSVSQRKLAEETPMFKG 1011

Query: 768  -----------TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNA 813
                                      G  +H+ +Q +           +        K  
Sbjct: 1012 IPELRPQVAYDRPSFMREKKISGAEAGTALHQFMQHLPVMKNHTLESLQQVKERVIEKEM 1071

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPKKD---IIISGRID 869
                     +L   +    ++P+    ++      EV     +   + +   I++ G ID
Sbjct: 1072 MTEEMSSRIDL-GQVLEFTKSPLYEKIITALSVKKEVPFMTLVKVDEHEQSQILLQGVID 1130

Query: 870  QISISQQNIFIFEYKTH--HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             ++  +  ++I +YKT        + + +   +  Q+  Y K +K+ +P K + C + ++
Sbjct: 1131 LLAEFEDEVYIVDYKTDYIRDFEVQQQELKQRYETQMKYYSKAIKEIFPTKKVSCHVYFL 1190


>gi|52079565|ref|YP_078356.1| ATP-dependent deoxyribonuclease subunit A [Bacillus licheniformis
            ATCC 14580]
 gi|52784929|ref|YP_090758.1| AddA [Bacillus licheniformis ATCC 14580]
 gi|81609244|sp|Q65LJ9|ADDA_BACLD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|52002776|gb|AAU22718.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus licheniformis
            ATCC 14580]
 gi|52347431|gb|AAU40065.1| AddA [Bacillus licheniformis ATCC 14580]
          Length = 1230

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/1033 (15%), Positives = 331/1033 (32%), Gaps = 141/1033 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFF 73
            I +D+  +       + + + L+ + G P          L Q  +    ++ FS L    
Sbjct: 222  IKEDIALVLEGMRQKLTRALDLTKQPGGPAPRAENFLDDLAQIDRLIQQQDDFSALHELV 281

Query: 74   LT-----------QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
             T            ++ P+      ++   +    EKLK         +   +  +M   
Sbjct: 282  PTVSFQRLKPCKGDEYDPRLVDEAADLRNSAKKQLEKLKSDYFSRTPEQHLESLREMKPV 341

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-----KRDVSAWIRYKIDQEI 177
                + L       + EAKK+  ++DF DL  +   +L         V +        + 
Sbjct: 342  IQTLVQLVLEYGRRFAEAKKEKAIVDFSDLEHDCLAILSVKNPAGEAVPSEAAKFYRHQF 401

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            + +L+DE QDT+L+Q  +++ + ++   G         LF VGD KQSIY F  AEP   
Sbjct: 402  HEVLVDEYQDTNLVQEAILKLVAKEEHEG--------NLFMVGDVKQSIYRFRLAEPLLF 453

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L + +      + +G     I+L  +FRS +DIL   + +F      +    +       
Sbjct: 454  LSKYKRFTDDGSGSG---QKIDLNKNFRSRSDILDSTNFLFKQLMGEKVGEVEYDEQAEL 510

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            +             E ++ +  S          +  +   +  +  + AR +A  I  +I
Sbjct: 511  KLGASYPPNEATKTELLLIETPSG---------APGEEAEELEAVQLEARAMAGQIRRLI 561

Query: 358  GTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                   + K    R IQ +DI+VL+R     P I    +       I V  N      +
Sbjct: 562  TEKFQVYDAKAKASRNIQYRDIVVLLRSMPWAPQIMDEFK----QQGIPVYANLSTGYFE 617

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF- 473
               +   ++L + I +   D+    +L+SP+    E+++  +   + +    YE ++ + 
Sbjct: 618  ATEVSVTLSLLKIIDNAYQDIPLASVLRSPVVGLDENEL-SLIRIKDKKAPFYEAMKAYL 676

Query: 474  -----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVID 527
                       K +     + +    A+  S  +    I    K          G +   
Sbjct: 677  AAADGDERLSEKLRRFDGLLKKWRAYAKNHSVAELIWEIYRDTKYLDYVGGMPGGKQRQA 736

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKG 582
             L    +     E  S+  L   +  +E+           RA S   + VR+MT+H++KG
Sbjct: 737  NLRALYDRARSYEATSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKG 796

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PVVF    G         K   +   L           +       +  + K L++ 
Sbjct: 797  LEFPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPKWRISYPTLPLIAMKKKLRRE 856

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYD 683
               E  R+LYV +TRA ++L +   +    +                   ++   +++ D
Sbjct: 857  LLSEELRVLYVALTRAKEKLYLVGTAKDKEKLLADWRTQAAGSEWLLPDYERFQAKSYLD 916

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI---- 739
             +  +      + +      I++       +         L+ E   +   +        
Sbjct: 917  FIGPALMRHRDMDESGAPPVIDEIREHPARFQVSWLSAADLQAEAVDQAGEERHDRLVQI 976

Query: 740  ------------------PKKLFSPIKNDINEPYILNPSTIDTKGK-------------- 767
                                    P K+        + S +  + +              
Sbjct: 977  QMGHAIEGAFEYEQQVRERLAWSYPYKDAAKVRTKQSVSEMKRQKEYEDEYGDRSLIRPS 1036

Query: 768  -------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPA 818
                        +        RG  +H ++Q I      + KN ++    +    +L   
Sbjct: 1037 QEALLFKRPSFMMAKGLTAAERGTAMHTVMQHIPLTRTPE-KNELSRLLDRLVEKELLTE 1095

Query: 819  KEYKNLLL-SITRLLENPMMTTAM-SCDSYSEVSVSGKINC---------PKKDIIISGR 867
             +   +    I    +  +      +     EV  +  ++            + ++I G 
Sbjct: 1096 DQRAAIEEDDILAFFDTEIGQKLFGARRVEREVPFNMTLSAKEVYPDLESADEPVLIQGI 1155

Query: 868  IDQISISQQNIFIFEYKTHHH-------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
            ID +  ++   ++ +YKT                 +   +  Q+ +Y + ++        
Sbjct: 1156 IDCLFETEDGFYLLDYKTDRIHGKYRNGFEGAEPILRKRYETQIQLYARAVETMIKMPLK 1215

Query: 921  VCLLIYVSEPKVF 933
               L +     V 
Sbjct: 1216 GRALYFFDGGHVL 1228


>gi|266620646|ref|ZP_06113581.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479]
 gi|288867733|gb|EFD00032.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479]
          Length = 1244

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 174/1015 (17%), Positives = 334/1015 (32%), Gaps = 135/1015 (13%)

Query: 23   LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
             P   +  +   + +  E G          L            F  L+S         +K
Sbjct: 243  GPTAYIPMLTSDLRMLREIGKAEDYASLNEL-------LGCAAFDRLASIRSKDIDADKK 295

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              +T     +      KL+             +      +    L LA   N  Y+ AK+
Sbjct: 296  AFVT-GCRDRVKKAVGKLRDLYCFESMETVVRDMRGTAGAVRMLLKLAGEFNDRYQAAKQ 354

Query: 143  KNCVLDFEDLIINTND-LLKKRDV--------------------SAWIRYKIDQEINHIL 181
            +  ++DF DL     + LL+K D                      + +  ++ ++   IL
Sbjct: 355  EKNLVDFGDLEHYALEVLLEKPDGESEECAGDSMDDSLDASGRRPSAVADELSRQFEEIL 414

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QD++ +Q  +I +++ +             +F VGD KQSIY F  A P+  L++ 
Sbjct: 415  VDEYQDSNDVQETLIHAISRE-------RFGTPNVFMVGDVKQSIYKFRLARPELFLKKY 467

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                +        +  IEL  +FRS   +L+ +++VF             T         
Sbjct: 468  ESYPRE----EGLYQTIELHQNFRSRDSVLSGINEVFYQIMTKGLGGILYTEDAALHPGA 523

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            + +     +  ++     +    Q +      D+L   +S  + AR I   +  ++  +T
Sbjct: 524  VFEPTEETVGGKLELHLVNTGGIQLKQLEMESDALD-YTSREMEARLIVSRMKELVNPET 582

Query: 362  IFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                      + R     D+++L+R              +  +  I      R      +
Sbjct: 583  GLKIWDKKEKRYRTACYGDMVILLRSLSG---FAEDFVNILMNEGIPAYAERRTGYFTAI 639

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT------QRHETETVYEYI 470
             ++ ++     I +   D+    +LKSP+   S++D+ ++        ++ +   +Y   
Sbjct: 640  EVETVLCFLSVIDNPMQDIPLAAVLKSPMVGASDEDLARLMAVFKRTAKKGQDRGIYGAW 699

Query: 471  QKFANCGIS---------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
              +               K       + E   +A + S H+   +I           +  
Sbjct: 700  LYYLENCPEEEREEELYRKLALFFDELAEYRRMAGYLSIHELLYVIYENTGYYDYVAAMP 759

Query: 522  -GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMT 576
             G+     LD  +      E+ SYS L   I  +E+           A + + N VRI++
Sbjct: 760  AGDARQANLDMLVEKASAYEKTSYSGLFHFIRYIEKLKKYDTDFGEAALAGDGNTVRILS 819

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P++FL   G +        K+ I P L           + K+     + L 
Sbjct: 820  IHKSKGLEFPIIFLAGMGKKFNKQDLYGKILIDPDLGIATDYLDLDLRVKTSTLKKNVLR 879

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR----------------- 679
            + L+     E  R+LYV MTRA ++LI+       ++K                      
Sbjct: 880  RRLELEALGEELRVLYVAMTRAKEKLIMTGTDRYLDKKLERFSDIKRTAGQIPFTILSTA 939

Query: 680  -TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
             ++ D +  S         +     +        E+S        +E +   K   +E  
Sbjct: 940  DSFLDWLLMSLSGKLSESALLSEAGVETGLMTVREYSVADLVGVEIEHQAEKKLSKEELL 999

Query: 739  IPK-----------------KLFSPIKNDINEPYILNPSTIDTKGKTNLESLL------- 774
                                    P   DI     L+ S +  +G+   E          
Sbjct: 1000 NFDCSRIYDEAYAAGISAAFSYHYPHTADIGLHTKLSVSELKKQGQMVDEEESTFLPTIP 1059

Query: 775  ----------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             RG   H+ L+++         +  T+  T + + +  +E   L
Sbjct: 1060 AFLMEENGKKEQGGGAFRGTAYHRALELLEFPAMKTLADVETALETFHREKYMDEESLAL 1119

Query: 825  LLS--ITRLLENPMMTTAMSCDS----YSEVSV-------SGKINCPKKDIIISGRIDQI 871
            L +  I   L +P+     +  S    Y E            ++    + ++I G ID  
Sbjct: 1120 LDAGIIWNFLSSPLGRRMSAAQSKGLLYKEQQFVIGIPAREMEVCDSGELVLIQGIIDAY 1179

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                  + + +YKT H V      +   +  QL  Y++ L+     K ++  +IY
Sbjct: 1180 MEEGDGLVLIDYKTDHVVKGHESLLTERYGIQLEYYKRALEQM-TGKRVLEKIIY 1233


>gi|323701383|ref|ZP_08113057.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574]
 gi|323533642|gb|EGB23507.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574]
          Length = 1243

 Score =  378 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/1067 (14%), Positives = 341/1067 (31%), Gaps = 151/1067 (14%)

Query: 1    LKNRFGLSLNESYELI------YKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKK 49
            L + F +   ++ + +       + +       +  + +   L+ + G P     T+   
Sbjct: 196  LADGFAIPQEQTLDDLPWINQVKEYIGQELDGVLGMLKQAALLARQPGGPEPYSATLAAD 255

Query: 50   AQTLQQASQTQCIEERFSLLSSFFLT-QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
               +Q              LS   L   K  P K  I + + ++   L++K K+   E  
Sbjct: 256  IVNIQSLRDCCGDTWDKMYLSFADLKWGKLKPCKGEIDEALKERVKGLRDKAKERVKEIA 315

Query: 109  K---IRDRFNTYKMFKSTLASLT----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                  D     +  +S    +     L       Y + K+   ++DF DL      +L 
Sbjct: 316  ATYFYADAELILRDLRSLAPLIQELAQLTIDFMDLYRQKKQAKGLVDFADLEHYCLAILL 375

Query: 162  KRD------VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              +      V + +  ++ ++   +L+DE QD + +Q  +++ +             P  
Sbjct: 376  DEESKPGQLVPSPVARELQEQFAEVLVDEYQDINGVQETILQLVA-----------KPHN 424

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             F VGD KQSIY F  AEP   L + +               ++L  +FRS + ++  V+
Sbjct: 425  RFMVGDVKQSIYRFRLAEPGLFLSKYQQYGV---PENGAGCRVDLTKNFRSRSGVVNAVN 481

Query: 276  KVFSIPENAQ--GLSEDSTTTIRHRSSRI-------GQVGTVQLWEQVVSQHDSQCNPQQ 326
             VF          +  D+   +R+ +           +   + L ++   +  +  + + 
Sbjct: 482  FVFRQIMTRGAGEVDYDAAAELRYGADFPPREDGAAEEPVELYLIDRKEPEVTAVESQED 541

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF----------SNGKKRVIQAKDI 376
               +   + L +  +    AR +   I  M+                  G  R +  +DI
Sbjct: 542  SEGSPPDEELEELDADQAEARLVGRRILEMVKGTADRPGPPLKVWDKHAGCYRPVTYRDI 601

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            ++L+R                    I    +      + + ++  ++L + I +   D+ 
Sbjct: 602  VILLRATTGRAN---TFLEELRSLGIPTYADLSTGYFEAIEVETFLSLLKVIDNPRQDVP 658

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYE---YIQKFANCGISKFQHVIKYIHELIH 493
               +L+SP+      D+  I       +                       ++ +     
Sbjct: 659  LAAVLRSPMVGLKAADLAAIRLCAPAGDFYDAVRTAAGSNLGEVSHVLASFLENLARWRT 718

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
             A+     D    +               G +    L    +   + E  S   L   + 
Sbjct: 719  QARRGPLADLIWTLYRETGYYDYVGGMVGGTQRQANLRVLYHRAKQYEGTSLRGLFRFLR 778

Query: 553  ELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             +E+           R+ S N + VRIM++H +KGLE PVVF+   G Q       K M 
Sbjct: 779  FVERLRDTGSDLGSARSLSENEDVVRIMSIHKSKGLEFPVVFVAGLGKQFNLRDLTKDML 838

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +   +   P I     +    +     + + +K+ +  E  R+LYV +TRA ++LI+   
Sbjct: 839  MHKEMGVGPQIIDLAARVSYPSLPKLLIRQRIKRESVAEEMRVLYVALTRAREKLILVGS 898

Query: 668  -------------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
                                   +    + +T  D +  +       +++        + 
Sbjct: 899  VRDLAKSLEKWCGPVNHPNWPLPDGDLLSAKTCLDWLCPAVARHRAGRELLKLAGCEAEP 958

Query: 709  WIAYEWSTHHPENTP-----------------------LEREETIKQLMDEQKIPKKLFS 745
                                                  + + E +       +I ++L  
Sbjct: 959  VQQVATDASSWSVQVVNMADMQGKAVAGQDAYSEWLAHVRKMEPLADNGYLTEIDRRLGW 1018

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDN---------------------QTFNRGL 784
                          +  + K + +LE+   ++                         RG 
Sbjct: 1019 RYPWSEVTARPAKVAVTEIKRRFDLEANQEEDNEFHRPVLTTRPRFLQQHQGLTAAERGS 1078

Query: 785  IIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM- 841
             IH ++Q I    +P+ ++ + +     +   L P +        I +   +P+    + 
Sbjct: 1079 AIHLVMQHIPLDGVPDEEKIDSLLQQLIQKEILTPEQAAVIDPRLIIKFFTSPIGRRVLQ 1138

Query: 842  SCDSYSEVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
            +     E+  S  +                + +++ G ID +      + + +YK+    
Sbjct: 1139 APKVKRELPFSLTLPAIEVYPDLSSQAGRDELVLVQGVIDCLVDEGDGLLLIDYKSDKVW 1198

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV-SEPKVFII 935
            P +   +   +  Q+++Y + ++D    + +   +IY+    ++  +
Sbjct: 1199 PGQQSPV-DRYRGQMNLYTRAVEDIL-GRRVKERVIYLFENGEILNL 1243


>gi|126698625|ref|YP_001087522.1| ATP-dependent nuclease subunit A [Clostridium difficile 630]
 gi|123174482|sp|Q18AN9|ADDA_CLOD6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|115250062|emb|CAJ67882.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
            [Clostridium difficile]
          Length = 1275

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/1042 (15%), Positives = 338/1042 (32%), Gaps = 165/1042 (15%)

Query: 33   KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------ 86
            + +    E  +    K A  + QA   +  +E +  ++S          K I        
Sbjct: 243  EELETFAEKLSVEYKKIAD-ISQAC-NKSWDEAYKKMASMSFENYVKGVKRISKDAPSYI 300

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-------YLNAHYEE 139
            +E  +K+  +++K KKS +  +      +   + +       + K            Y  
Sbjct: 301  KESKEKAKTIRDKTKKSLESIVSATFNKDNDSIREEIKYLYNIVKPISSVVLRFEEEYSN 360

Query: 140  AKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             K++  ++DF D+     ++L         V + I      +   I IDE QD++L+Q  
Sbjct: 361  KKREKGIIDFNDIEHFALNILTDVDEKGNIVPSDIAVGYRNKFYEIFIDEYQDSNLVQEV 420

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            +++++          ++     F VGD KQSIY F  A+P+      +         G  
Sbjct: 421  LLKAVA---------NTETPNRFMVGDVKQSIYRFRQAKPEL---FLQKYNNYNDKKGSS 468

Query: 255  FSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQ-------V 305
               I L  +FRS  +++  V+ +F     EN   +       +   ++            
Sbjct: 469  HRKIMLYKNFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDTDEKSIIG 528

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE-----SSASILARRIAYTISNM---- 356
            G  ++                +           E      +  + AR +   I ++    
Sbjct: 529  GATEIHLIQKDNKLDDDIINDKDDRINNKENEIEEEEKLDNIQLEARMVGNIIKDLMKVN 588

Query: 357  ----IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                I           R ++ +DI++L+R       +         +  I    +     
Sbjct: 589  EDGKIQKVYDKGIDGYRPVEFRDIVILLRATSAWAPV---FADELMNMDIPTYADVGVGY 645

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----- 467
             D + IK +++L + I +   D+  + +LKSP+F F+ +D+  I  Q  +          
Sbjct: 646  FDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKST 705

Query: 468  -------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                         E     +   I+K +  +  + E    + + S  +F   +       
Sbjct: 706  AEYDGFTDSQNENESEFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYY 765

Query: 515  QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSAN 568
                +   G++    L        + E+ S   +   ++ +E            +    N
Sbjct: 766  AYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGEN 825

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             N VRIM++H +KGLE PVV     G    +    K +    +L   P    +  +    
Sbjct: 826  ANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRISFP 885

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQR 679
            +     L   +      E  R+LYV  TRA ++LII              ++  +  +  
Sbjct: 886  SIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGIESLDTI 945

Query: 680  TWYDMVYDSFHNDERVK------------------KIKLTNSINKDEWIAYEWSTHHPEN 721
            + Y+++      D  +                    +      +K     +  +    E 
Sbjct: 946  SQYEILKGKNFLDWIMPCVLRHRDLSNLLEEVGLDAVFNVEHNSKWYGKLWNKNDILVEK 1005

Query: 722  TPLEREETIKQLMD-------------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
               E +E+I+++++             E +       P +    +P  ++ + I      
Sbjct: 1006 KSDEEKESIEEILEKIDVNNPDSDYYGEIEEKLNYIYPYEFSTRKPATISVTEIKKIQNN 1065

Query: 769  ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                    E          RG I+H +++V+         +  +
Sbjct: 1066 YEEELINTIFEQKVILKKPLFIQNEEEREKISGTERGTIVHLVMEVLDLKNVSSVNDIKS 1125

Query: 807  SYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSY-SEVSVSGKINCPK---- 859
                  +K    ++  +++    I +   + +    ++ +    E S+  ++N       
Sbjct: 1126 QIRGFVSKGIITEKQASIVNPYKIYKFFASNIGKRMLNAEIINREKSIYAQVNMKDIYIY 1185

Query: 860  --------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
                          + +++ G +D        I + +YKT     + I  I   +  QL 
Sbjct: 1186 EKLINNDDKKLYDNESVMLRGIVDAYFEEDNQIVLVDYKTDFVNEENINQIIEKYKKQLD 1245

Query: 906  IYEKILKDSYPNKSLVCLLIYV 927
            +Y  I++     KS+    IY+
Sbjct: 1246 LYADIIETL-TGKSVKEKCIYL 1266


>gi|255305967|ref|ZP_05350139.1| ATP-dependent nuclease subunit A [Clostridium difficile ATCC 43255]
          Length = 1275

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/1042 (15%), Positives = 338/1042 (32%), Gaps = 165/1042 (15%)

Query: 33   KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------ 86
            + +    E  +    K A  + QA   +  +E +  ++S          K I        
Sbjct: 243  EELETFAEKLSVEYKKIAD-ISQAC-NKSWDEAYKKMASMSFENYVKGVKRISKDAPSYI 300

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-------YLNAHYEE 139
            +E  +K+  +++K KKS +  +      +   + +       + K            Y  
Sbjct: 301  KESKEKAKTIRDKTKKSLESIVSATFNKDNDSIREEIKYLYNIVKPISSVVLRFEEEYSN 360

Query: 140  AKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             K++  ++DF D+     ++L         V + I      +   I IDE QD++L+Q  
Sbjct: 361  KKREKGIIDFNDIEHFALNILTDVDEKGNIVPSDIAVGYRNKFYEIFIDEYQDSNLVQEV 420

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            +++++          ++     F VGD KQSIY F  A+P+      +         G  
Sbjct: 421  LLKAVA---------NTETPNRFMVGDVKQSIYRFRQAKPEL---FLQKYNNYNDKKGSS 468

Query: 255  FSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQ-------V 305
               I L  +FRS  +++  V+ +F     EN   +       +   ++            
Sbjct: 469  HRKIMLYKNFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDTDEKSIIG 528

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE-----SSASILARRIAYTISNM---- 356
            G  ++                +           E      +  + AR +   I ++    
Sbjct: 529  GATEIHLIQKDNKLDDDIINDKDDRINNKENEIEEEEKLDNIQLEARMVGNIIKDLMKVN 588

Query: 357  ----IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                I           R ++ +DI++L+R       +         +  I    +     
Sbjct: 589  EDGKIQKVYDKGIDGYRPVEFRDIVILLRATSAWAPV---FADELMNMDIPTYADVGVGY 645

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----- 467
             D + IK +++L + I +   D+  + +LKSP+F F+ +D+  I  Q  +          
Sbjct: 646  FDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKST 705

Query: 468  -------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                         E     +   I+K +  +  + E    + + S  +F   +       
Sbjct: 706  AEYDGFTDSQNENESEFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYY 765

Query: 515  QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSAN 568
                +   G++    L        + E+ S   +   ++ +E            +    N
Sbjct: 766  AYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGEN 825

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             N VRIM++H +KGLE PVV     G    +    K +    +L   P    +  +    
Sbjct: 826  ANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRISFP 885

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQR 679
            +     L   +      E  R+LYV  TRA ++LII              ++  +  +  
Sbjct: 886  SIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGIESLDTI 945

Query: 680  TWYDMVYDSFHNDERVK------------------KIKLTNSINKDEWIAYEWSTHHPEN 721
            + Y+++      D  +                    +      +K     +  +    E 
Sbjct: 946  SQYEILKGKNFLDWIMPCVLRHRDLSNLLEEVGLDAVFNVEHNSKWYGKLWNKNDILVEK 1005

Query: 722  TPLEREETIKQLMD-------------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
               E +E+I+++++             E +       P +    +P  ++ + I      
Sbjct: 1006 KSDEEKESIEEILEKIDVDNPDSDYYSEIEEKLNYIYPYEFSTRKPATISVTEIKKIQNN 1065

Query: 769  ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                    E          RG I+H +++V+         +  +
Sbjct: 1066 YEEELINTIFEQKVILKKPLFIQNEEEREKISGTERGTIVHLVMEVLDLKNVSSVNDIKS 1125

Query: 807  SYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSY-SEVSVSGKINCPK---- 859
                  +K    ++  +++    I +   + +    ++ +    E S+  ++N       
Sbjct: 1126 QIRGFVSKGIITEKQASIVNPYKIYKFFASNIGKRMLNAEIINREKSIYAQVNMKDIYIY 1185

Query: 860  --------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
                          + +++ G +D        I + +YKT     + I  I   +  QL 
Sbjct: 1186 EKLINNDDKKLYDNESVMLRGIVDAYFEEDNQIVLVDYKTDFVNEENINQIIEKYKKQLD 1245

Query: 906  IYEKILKDSYPNKSLVCLLIYV 927
            +Y  I++     KS+    IY+
Sbjct: 1246 LYADIIETL-TGKSVKEKCIYL 1266


>gi|255100077|ref|ZP_05329054.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-63q42]
          Length = 1275

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/1042 (15%), Positives = 338/1042 (32%), Gaps = 165/1042 (15%)

Query: 33   KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------ 86
            + +    E  +    K A  + QA   +  +E +  ++S          K I        
Sbjct: 243  EELETFAEKLSVEYKKIAD-ISQAC-NKSWDEAYKKMASMSFENYVKGVKRISKDAPSYI 300

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-------YLNAHYEE 139
            +E  +K+  +++K KKS +  +      +   + +       + K            Y  
Sbjct: 301  KESKEKAKTIRDKTKKSLESIVSATFNKDNDSIREEIKYLYNIVKPISSVVLRFEEEYSN 360

Query: 140  AKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             K++  ++DF D+     ++L         V + I      +   I IDE QD++L+Q  
Sbjct: 361  KKREKGIIDFNDIEHFALNILTDVDEKGNIVPSDIAVGYRNKFYEIFIDEYQDSNLVQEV 420

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            +++++          ++     F VGD KQSIY F  A+P+      +         G  
Sbjct: 421  LLKAVA---------NTETPNRFMVGDVKQSIYRFRQAKPEL---FLQKYNNYNDKKGSS 468

Query: 255  FSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQ-------V 305
               I L  +FRS  +++  V+ +F     EN   +       +   ++            
Sbjct: 469  HRKIMLYKNFRSREEVVDAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDTDEKSIIG 528

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE-----SSASILARRIAYTISNM---- 356
            G  ++                +           E      +  + AR +   I ++    
Sbjct: 529  GATEIHLIQKDNKLDDDIINDKDDRINNKEDEIEEEEKLDNIQLEARMVGNIIKDLMKVN 588

Query: 357  ----IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                I           R ++ +DI++L+R       +         +  I    +     
Sbjct: 589  EDGKIQKVYDKGIDGYRPVEFRDIVILLRATSAWAPV---FADELMNMDIPTYADVGVGY 645

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----- 467
             D + IK +++L + I +   D+  + +LKSP+F F+ +D+  I  Q  +          
Sbjct: 646  FDTIEIKTILSLLQIIDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKST 705

Query: 468  -------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                         E     +   I+K +  +  + E    + + S  +F   +       
Sbjct: 706  AEYDGFTDSQNENESEFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYY 765

Query: 515  QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSAN 568
                +   G++    L        + E+ S   +   ++ +E            +    N
Sbjct: 766  AYVGALPGGSQRQANLKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGEN 825

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             N VRIM++H +KGLE PVV     G    +    K +    +L   P    +  +    
Sbjct: 826  ANVVRIMSIHKSKGLEFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRISFP 885

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQR 679
            +     L   +      E  R+LYV  TRA ++LII              ++  +  +  
Sbjct: 886  SIAKEALKSKINIENLSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGIESLDTI 945

Query: 680  TWYDMVYDSFHNDERVK------------------KIKLTNSINKDEWIAYEWSTHHPEN 721
            + Y+++      D  +                    +      +K     +  +    E 
Sbjct: 946  SQYEILKGKNFLDWIMPCVLRHRDLSNLLEEVGLDAVFNVEHNSKWYGKLWNKNDILVEK 1005

Query: 722  TPLEREETIKQLMD-------------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
               E +E+I+++++             E +       P +    +P  ++ + I      
Sbjct: 1006 KSDEEKESIEEILEKIDVDNPDSDYYSEIEEKLNYIYPYEFSTRKPATISVTEIKKIQNN 1065

Query: 769  ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                    E          RG I+H +++V+         +  +
Sbjct: 1066 YEEELINTIFEQKVILKKPLFIQNEEEREKISGTERGTIVHLVMEVLDLKNVSSVNDIKS 1125

Query: 807  SYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSY-SEVSVSGKINCPK---- 859
                  +K    ++  +++    I +   + +    ++ +    E S+  ++N       
Sbjct: 1126 QIRGFVSKGIITEKQASIVNPYKIYKFFASNIGKRMLNAEIINREKSIYAQVNMKDIYIY 1185

Query: 860  --------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
                          + +++ G +D        I + +YKT     + I  I   +  QL 
Sbjct: 1186 EKLINNDDKKLYDNESVMLRGIVDAYFEEDNQIVLVDYKTDFVNEENINQIIEKYKKQLD 1245

Query: 906  IYEKILKDSYPNKSLVCLLIYV 927
            +Y  I++     KS+    IY+
Sbjct: 1246 LYADIIETL-TGKSVKEKCIYL 1266


>gi|291613181|ref|YP_003523338.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1]
 gi|291583293|gb|ADE10951.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1]
          Length = 1134

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 180/972 (18%), Positives = 337/972 (34%), Gaps = 98/972 (10%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+    + ++          W +          +V      G  T   KA  L+ A    
Sbjct: 213  LRADLAVDMDFDPVA----DWGMCGNSEEVFFAFVRQLANDGTGTQKSKASELELAWTDS 268

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              EERF+ +     TQ   P+    T+   + +       +       ++RD     + +
Sbjct: 269  RPEERFAKVQPSLFTQAGEPRSFKPTK--QQDAEAFLVTREALFGSLQEVRDTLAEQQAY 326

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +   A L         Y+  K +   +DF DL      LL++ + +  ++YK+D    H+
Sbjct: 327  RLNEAVLHCGVAFLERYQALKAQKQQMDFSDLEWQLCRLLQQSEHAETMQYKLDSRYRHV 386

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QDT+ +QW+++R+  +      +      T+F VGD KQSIY F  A+ +     
Sbjct: 387  LLDEFQDTNPLQWQILRAWFDASVAVDSQ----PTVFVVGDPKQSIYRFRRADARLFGVA 442

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +   Q+  +   Q        L+ R++  ++  V+ VF           D    + H++ 
Sbjct: 443  REYLQEYFSAQTQGN-----SLTRRNSQPVVDAVNAVFHEQP-------DGFEFVEHQTH 490

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP--------------QESSASILA 346
            +    G V +    V++     N   +   +  +                 +E +  I A
Sbjct: 491  QKELPGYVLVLPLAVAEVIPSPNGGGDINGAGGEGEELRLRDPLTTPRDEAEEGARQIEA 550

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             + A  +  +    ++   G++R     DI+VLVR R    +     R       I  + 
Sbjct: 551  AQFAEMLQTIARDWSVNEGGQERRATYGDIMVLVRSRTHLTVYEEALRA----RHIPFIS 606

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-- 464
            + R  L D L  +D+ AL  F+++   DL+   +L++P+F  S+ D+ ++     E    
Sbjct: 607  SRRGGLLDTLEAEDVQALLMFLITPFADLALAQVLRTPIFACSDADLMRLAQNSAEYGAT 666

Query: 465  ------------------TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                              T +    +         +     +   + +A     HD    
Sbjct: 667  SSEGGAEISAQRSALGTRTSWWQRLQHLGDPSPALRRATGLLQRWLALADKLPVHDLLDR 726

Query: 507  ILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
            I        ++ +    E+       L  F+   L  +   Y SL   + EL +   +  
Sbjct: 727  IYFEGDVLARYAAVLPPEMRAKVAANLHAFMEIALSVDAGRYPSLPRFLQELRELRDSKD 786

Query: 563  RAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
             A          + VRI TVH +KGLE+P+V+L+D  ++  S      +   P+    P 
Sbjct: 787  DAPDEGKLGSAGDAVRIYTVHESKGLEAPIVWLLDANAEKRSMAGNDVLLDWPTQEPQPS 846

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                     SR    + L +        E   LLYV MTRA   LI+         K++ 
Sbjct: 847  HFSLYADQASRGKKRAHLFEQDAAQQAREEMNLLYVAMTRAQQALIVSG---NKGGKENR 903

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
              TWY+ +     + E   +  + +++ K            P   P  +      +  ++
Sbjct: 904  STTWYERIAAVARDQENPLRKAVPSAVEKQGAAGL---VTLPAIEPAGKRAARNTMQQQR 960

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
             I         ++ +     + ST    G+          +    G       +  FT P
Sbjct: 961  GIWLHALLQHLSETSPDVTTSHSTKSASGQVAGFRPPLTPRPLPAG-------EGAFTGP 1013

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
                         +     P  E+++LL     LL  P +        Y           
Sbjct: 1014 GE-------REMLQQRLGIPFAEFESLLQQAQHLLTLPQLVRFFDDRQYRNACNEMPYIN 1066

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
             + ++    RID++      +++ +YK               +  Q+  Y   +K  Y  
Sbjct: 1067 ARGELK---RIDRLVEFDDEVWVVDYKLG------DSEDADRYRQQMQEYRAAMKSVYAG 1117

Query: 918  KSLVCLLIYVSE 929
            K + C L++   
Sbjct: 1118 KVVRCALVFADG 1129


>gi|254974592|ref|ZP_05271064.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-66c26]
 gi|255091983|ref|ZP_05321461.1| ATP-dependent nuclease subunit A [Clostridium difficile CIP 107932]
 gi|255313717|ref|ZP_05355300.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-76w55]
 gi|255516399|ref|ZP_05384075.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-97b34]
 gi|255649498|ref|ZP_05396400.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-37x79]
 gi|260682665|ref|YP_003213950.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196]
 gi|260686264|ref|YP_003217397.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291]
 gi|260208828|emb|CBA61747.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196]
 gi|260212280|emb|CBE03030.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291]
          Length = 1275

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/1027 (15%), Positives = 334/1027 (32%), Gaps = 164/1027 (15%)

Query: 48   KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLKEKLK 101
            KK   + QA   +  +E +  ++S          K I        +E  +K+  +++K K
Sbjct: 257  KKIANISQAC-NKSWDEAYKKMASMSFENYVKGVKRISKDAPSYIKESKEKAKTIRDKTK 315

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLII 154
            KS +  +      +   + +       + K            Y   K++  ++DF D+  
Sbjct: 316  KSLESIVSATFNKDNDSIREEIKYLYNIVKPISSVVLRFEEEYSNKKREKGIIDFNDIEH 375

Query: 155  NTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
               ++L         V + I      +   I IDE QD++L+Q  +++++          
Sbjct: 376  FALNILTDIDEKGNIVPSDIAVGYRNKFYEIFIDEYQDSNLVQEVLLKAVA--------- 426

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
            ++     F VGD KQSIY F  A+P+      +         G     I L  +FRS  +
Sbjct: 427  NTETPNRFMVGDVKQSIYRFRQAKPEL---FLQKYNNYNDKKGSSHRKIMLYKNFRSREE 483

Query: 270  ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQ-------VGTVQLWEQVVSQHDS 320
            ++  V+ +F     EN   +       +   ++            G  ++          
Sbjct: 484  VVDAVNYIFENIMNENIGEIEYTEKERLNLGANFNVDTDEKSIIGGATEIHLIQKDNKLD 543

Query: 321  QCNPQQESWTSYFDSLPQE-----SSASILARRIAYTISNM--------IGTDTIFSNGK 367
                  +           E      +  + AR +   I ++        I          
Sbjct: 544  DDIINDKDDRINNKENEIEEEEKLDNIQLEARMVGNIIKDLMKVNEDGKIQKVYDKGIDG 603

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++ +DI++L+R       +         +  I    +      D + IK +++L + 
Sbjct: 604  YRPVEFRDIVILLRATSAWAPV---FADELMNMDIPTYADVGVGYFDTIEIKTILSLLQI 660

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY------------------EY 469
            I +   D+  + +LKSP+F F+ +D+  I  Q  +                       E 
Sbjct: 661  IDNPMQDIPLISVLKSPIFGFTPEDLIDIRVQSKDKIFYEVLKSTAEYDGFTDSQNETES 720

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
                +   I+K +  +  + E    + + S  +F   +           +   G++    
Sbjct: 721  EFIPSEECINKSKDFLIKLKEFKEKSMYMSTDEFIWYLYTRTGYYAYVGALPGGSQRQAN 780

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            L        + E+ S   +   ++ +E            +    N N VRIM++H +KGL
Sbjct: 781  LKVLFERAKQFEETSLKGIFNFVNFIEKLKKSSSDMGSAKTLGENANVVRIMSIHKSKGL 840

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E PVV     G    +    K +    +L   P    +  +    +     L   +    
Sbjct: 841  EFPVVICSAMGKNFNTQDFKKSILYHHNLGYGPQFVDYERRISFPSIAKEALKSKINIEN 900

Query: 644  QEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQRTWYDMVYDSFHNDER 694
              E  R+LYV  TRA ++LII              ++  +  +  + Y+++      D  
Sbjct: 901  LSEEMRVLYVAFTRAKEKLIITGSTRNIQDSIKRWSNGIESLDTISQYEILKGKNFLDWI 960

Query: 695  VK------------------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
            +                    +      +K     +  +    E    E +E+I++++++
Sbjct: 961  MPCVLRHRDLSNLLEEVGLDAVFNVEHNSKWYGKLWNKNDILVEKKSDEEKESIEEILEK 1020

Query: 737  QKIPKK-------------LFSPIKNDINEPYILNPSTIDTKGKT--------------- 768
              +                   P +    +P  ++ + I                     
Sbjct: 1021 IDVDSPDSDYYSEIEKKLNYIYPYEFSTRKPATISVTEIKKIQNNYEEELINTIFEQKVI 1080

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                     E          RG I+H +++V+         +  +      +K    ++ 
Sbjct: 1081 LKKPLFIQNEEEREKISGTERGTIVHLVMEVLDLKNVSSVNDIKSQIRGFVSKGIITEKQ 1140

Query: 822  KNLLL--SITRLLENPMMTTAMSCDSY-SEVSVSGKINCPK------------------K 860
             +++    I +   + +    ++ +    E S+  ++N                     +
Sbjct: 1141 ASIVNPYKIYKFFASNIGKRMLNAEIINREKSIYAQVNMKDIYIYEKLINNDDKKLYDNE 1200

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
             +++ G +D        I + +YKT     + I  I   +  QL +Y  I++     KS+
Sbjct: 1201 SVMLRGIVDAYFEEDNQIVLVDYKTDFVNEENINQIIEKYKKQLDLYADIIETL-TGKSV 1259

Query: 921  VCLLIYV 927
                IY+
Sbjct: 1260 KEKCIYL 1266


>gi|290968022|ref|ZP_06559571.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str.
            28L]
 gi|290781928|gb|EFD94507.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str.
            28L]
          Length = 1217

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/971 (14%), Positives = 306/971 (31%), Gaps = 117/971 (12%)

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQK--------NIITQEINKKSPDLK-EKLKKS 103
            LQ   +    E     + +   T+    +K            ++I   S  L  +KL   
Sbjct: 257  LQGVLEKHTWEMTARAVKAVTFTRLPALRKLTPEDKACWEACKKIRTDSKKLIQDKLCPV 316

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                           +       + +     A YE+AK++   +DF DL      +L   
Sbjct: 317  YFAVSSADLLDGMRAVLPVMKGLVQVTSDFAAAYEKAKREKGWIDFSDLEHLCLKILSAP 376

Query: 164  D------VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            +      V + +  K+ ++   +LIDE QDT+ +Q  + + +           S     F
Sbjct: 377  ESTPDRIVPSAVARKLQEKYAEVLIDEYQDTNGVQELITQLV-----------SRTNNRF 425

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGD KQSIY F  A+P   L + +  ++           I+L  +FRS   IL  V++V
Sbjct: 426  MVGDIKQSIYRFRLADPSLFLEKYKRFRREPQAVE---RCIDLNRNFRSMPQILAAVNEV 482

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            F+     +             + R        +  +      S    ++E+  +   +  
Sbjct: 483  FAAIMTEEAAGLAYGEREFLHAGRGPSDHPHTVSGRTEVCLLSTGEKEKETTEATEATAQ 542

Query: 338  QESSASILARRIAYTISNMIGTDT--IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
            ++++    +  IA  I +++ + T     +G    +    I++L+R          +   
Sbjct: 543  EQTAFEQESAYIAEKIQHLLASHTYITEKDGTHTPLSYGHIVILLRSPAGKA---EVLVQ 599

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  I             + ++ +++L + I + + D+    +L+SPL   SE  + +
Sbjct: 600  ALQQAGIPSFAEQNGGYFAAIEVQIMLSLLQCIDNPQQDIPLAAVLRSPLVGVSEACLAE 659

Query: 456  ICTQRHETETVYEYIQKFANCGISK---FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
            +                      S     Q  ++ +      ++  S  +    +     
Sbjct: 660  LRLLGAGPLWRNAARYITQGENSSAVTALQQFLQQLESWRTYSRRHSVAELIWRLFSDTA 719

Query: 513  GRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHS 566
              +       G+     L        + E++ +  L   +  L++           +   
Sbjct: 720  YYEYVGGLPGGSIRQANLKALYERARQYEEHGFRGLFRYLRLLDKMKEDGVDLAPAKVAG 779

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
               + VRIM++H +KGLE PVV + D G         + +    +L           +  
Sbjct: 780  EKEDVVRIMSIHKSKGLEFPVVIVADMGKAFNRQDWNEPILFHHTLGIGLKQYDTDWRMS 839

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSN 677
                  + +       +  E  R+LYV MTRA + L++  H                   
Sbjct: 840  YPTLAWNGIRAQSAWESTAEEERILYVAMTRAKELLLLIGHTSHLANDWNRWCQGVPPER 899

Query: 678  QRTWYDMV---------------------------------------------YDSFHND 692
             ++++D V                                                   D
Sbjct: 900  AKSYWDWVMPTVLKNCSTAPALTTAIETATDGVWQNDIWQVRVQCSLPAVRSSRCKGERD 959

Query: 693  ERVKKI----KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
             R+  +                  +W   +P+      + ++ ++  +Q+  ++     +
Sbjct: 960  PRLAALQEGNPTGTEPPAWLEERLQWRYAYPQAVTAAAKLSVSEIKRQQQEWEQAALQAE 1019

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
              ++       +  D   +  L  +  +N       G  +HK +Q I             
Sbjct: 1020 RGLSRLLPEMATEEDPFAQPPLWEVTDENKMTGAAYGTAMHKAMQYIAGNTHAGLDEIRA 1079

Query: 807  SYCT-KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS-CDSYSEVSVSGKINC------ 857
                 +   ++ A E   + +  I      P+     +    + E   S  +        
Sbjct: 1080 DLVQWEKEGIFSAAERAAIKVAQIRAFWLQPLGKRMAASPVVHREYPFSVLLQGNPYLPT 1139

Query: 858  --PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
                + +++ G +D +    +   I +YKT        E     +  QL+IY++ ++   
Sbjct: 1140 LEAGEAVLVQGVLDVLFQEGEEWVILDYKTDRL--STPEAFRERYHVQLAIYKQAVEQV- 1196

Query: 916  PNKSLVCLLIY 926
              + +  + IY
Sbjct: 1197 TGRKVKEVYIY 1207


>gi|225574652|ref|ZP_03783262.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM
            10507]
 gi|225038120|gb|EEG48366.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM
            10507]
          Length = 1221

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 151/994 (15%), Positives = 332/994 (33%), Gaps = 118/994 (11%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL-TQKFTPQKNIITQEINKKSPDLKE 98
            E      L   + L + +    + E    LS   L T+K      ++ + + +    +KE
Sbjct: 248  EPMVEADLALVERLCRITDYDEMGEALEGLSYARLSTKKDLAVSQLLKERVQENRKQMKE 307

Query: 99   KLKKSQDEFIKIRDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
            +L K Q+++             +        +T+       + + K++  ++DF D+   
Sbjct: 308  RLGKLQEQYFYTTSEGILSDFRRCRGPMQVLITVTLRFLEKFSQKKREKNLVDFADMEHF 367

Query: 156  TNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
              ++L K++          +++ Q    ILIDE QD++ +Q  ++               
Sbjct: 368  ALNILVKKEGERCTPTQAAWELSQRYEEILIDEYQDSNYVQEMLL-------TYVSGWAK 420

Query: 212  SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
              + +F VGD KQSIY F  A P   + +        T    +   I+L  +FRS A +L
Sbjct: 421  QKKNIFMVGDVKQSIYRFRLAVPDLFMEKYHRY----TLEDSQEQRIDLHKNFRSRAQVL 476

Query: 272  TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              ++ +F      +    +               G V   E  +   D++     +    
Sbjct: 477  DGINFLFRQIMGQELGKVEYDQEAAL------YPGAVFPEENSLESSDTELLLIPQETME 530

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLI 389
              +     +   + A  IA  I  M+G + +     G  R ++  DI+VL+R        
Sbjct: 531  LMEDKEATTQREVEALAIAQRIHQMVGKERVLDKDSGTYRPVRYGDIVVLLRTVSGWA-- 588

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                R +     I      +      L +  ++       +   ++ F  +L SP+   +
Sbjct: 589  EDFLR-VFAGQGIPAYTASKTGYFSALEVVTVLNYLHICDNPLQEIPFTAVLHSPIVGCT 647

Query: 450  EDDIFKICTQRHE----TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
              ++  + T   +       ++   +    C   K +  +K   E      +   H    
Sbjct: 648  AQELAILKTSAPKLPVYARCLHYVQEGEEVCLRRKLESFLKIFQEHRKKVPYTPIHQLIQ 707

Query: 506  LILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PP 559
             IL      +   +   G +    L+  +   +  EQ SY  L   I  +E+        
Sbjct: 708  EILEETGYGRYAGALPGGRQRQANLNMLVEKAMDFEQTSYRGLFNFIRYIEKIQKYNVDF 767

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                   ++ + V+I+++H +KGLE P+VF+   G +         + + P L     + 
Sbjct: 768  GEVNLSGSSEDTVQILSIHKSKGLEFPIVFVAGMGKKFNQQDLNAMVVVHPDLGLGVDVV 827

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----- 674
                + +        +   LK     E  R+ YV +TRA ++LI+    +   ++     
Sbjct: 828  DPKLRVRCPTLPKQLIRAQLKDENLGEELRVFYVALTRAKEKLILTGTVSKLEKRIRDCA 887

Query: 675  --------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS----- 715
                           +  +  +D +  +      ++++     +     +  +       
Sbjct: 888  ALLEREKERLPYSLLAGAQCGWDWILPALARHPAMEELYDRFEVFHGRALFEQEPAKFHI 947

Query: 716  --THHPENTPLEREETIKQLMDEQKIPKK-------------------LFSPIKNDINEP 754
                       E EE +++ +  +++ ++                      P +     P
Sbjct: 948  QVAEAETLVVGELEEKLQRQLLRERMEQENWEEPEDEETYRVLEERFSYLYPYEILEQIP 1007

Query: 755  YILNPSTIDTKGKTNLESL-------------------LSDNQTFNRGLIIHKLLQVIF- 794
              +  S +  + +   +S                      + Q  +RG + H++++ +  
Sbjct: 1008 VKVTVSELKRRQQAEEDSDFLYFEPDVIPLVPDFIEKKEEEYQGASRGTVYHRVMERLDY 1067

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS----YSEV 849
            T    + +          +     +E   + +  I +LL + +        +    Y E 
Sbjct: 1068 TRAGSEEQIQEQLEEMCLSGRMSRQERDCVKVEDIWKLLCSELGKRMALAAAQGRLYREQ 1127

Query: 850  SVSGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
                             +++I++ G ID   + + ++ + +YKT    P +   +   + 
Sbjct: 1128 PFVISQPASQISREWPDRENILVQGMIDAWFLEEDHLVLVDYKTDRVYPGQERLLREKYR 1187

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             QL  Y + LK     K    ++   S  K   +
Sbjct: 1188 VQLENYAQALKRLTGKKVAEKVIYSFSMSKEIRV 1221


>gi|149182415|ref|ZP_01860891.1| AddA [Bacillus sp. SG-1]
 gi|148849878|gb|EDL64052.1| AddA [Bacillus sp. SG-1]
          Length = 1258

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 154/1051 (14%), Positives = 331/1051 (31%), Gaps = 140/1051 (13%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEE 64
             E +  D+        +   +   L+ E G P          L  A+ L  AS  +   E
Sbjct: 223  IEALKFDIMLSLKGAQALFQRAYDLTKEPGGPAPRAENFLDDLGIAEQLS-ASFQKSWSE 281

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY------- 117
              +L  S   ++    + +    ++ +++  L++K KK  ++  +               
Sbjct: 282  GQALFQSIKFSRLKPCKGDEYDSDLVEEAKTLRDKGKKMIEKLAEDFFSRKPETYLRDMK 341

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYK 172
            KM     + +   +  +  +   K +  V+DF DL     +++           ++   +
Sbjct: 342  KMRGVVASLVEAVRGFSHKFNALKNEKGVVDFADLEHYCLEIMTDPAEDGELKPSFAAME 401

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
              ++   +L+DE QDT+L+Q  ++  +T D             LF VGD KQSIY F  A
Sbjct: 402  YRKQFKEVLVDEYQDTNLVQESILGLVTADEEALG-------NLFMVGDVKQSIYRFRLA 454

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSED 290
            EP   L +         +  +    I+L  +FRS  ++L   + +F      N   +  D
Sbjct: 455  EPNLFLSKYNRFT---PSGAETGMKIDLSRNFRSRLEVLEGTNFLFKQIMGVNVGDIEYD 511

Query: 291  STTTIRHRSSRIGQVGT-VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                +   ++        +++     S  +                      + I AR +
Sbjct: 512  HEALLVKGAAYPEDEKYPIEVAVINQSDDEVPLAESASDLEGLVYDEADLEKSVIEARYM 571

Query: 350  AYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            A  +  +I       +   G+ R +Q +DI++L+R                  + I +  
Sbjct: 572  AQKVKELISEGKQVYDAKAGRHRKLQYRDIVILLRSM----PWAPEIMEEFKKHGIPIYA 627

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
            N      +   +  +++L + I +   D+  V +L+SP+    E+ + ++          
Sbjct: 628  NLSSGYFEATEVAIMLSLLKVIDNPYQDIPLVSVLRSPIVGIDEEGLAEVRIHSKSGTYY 687

Query: 467  YEYIQKFANCG--------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QF 517
                +  +             K    +  +      A+  S  D    +    +      
Sbjct: 688  EAVQRFVSKKQSEVNNEEAHEKLSRFLSSLTIWRTKARQGSLADLVWQLYRDTRFYDFAG 747

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEV 572
                G +    L    +   + E+ S+  L   +  +++           RA S   + V
Sbjct: 748  GMPGGKQRQANLRALYDRARQYEETSFRGLFRFLRFIDRMRERGDDLGAARALSEQEDVV 807

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            R+MT+H++KGLE PVVF+     Q       +   +               +    +   
Sbjct: 808  RMMTIHSSKGLEFPVVFVAGLSRQFNLMDLNQSYLLDKEFGFASKYLDPEKRISYPSLPQ 867

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE------------------- 673
                +  +  T  E  R+LYV +TRA ++L +      + +                   
Sbjct: 868  LAFKRKKRLETIAEEMRVLYVALTRAKEKLYLIGTVKDAEKSMKQWKEAAPQTDWLLPDY 927

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKI----------------------------------K 699
            +++   ++ D V  +         +                                  +
Sbjct: 928  ERAKALSFMDWVGPALVRHRDCTALNEGRSSVHSLPPEIHEHPSCWKLDVIPKSQFMLQE 987

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
              ++  + +W          E    E+EE  ++L      P+    P K  ++E   +  
Sbjct: 988  GEDAEEEIDWQENVKEGLPVEKESPEKEEVAERLSWRYSYPEAAVLPSKQSVSEIKRMFE 1047

Query: 760  STIDTKG------------KTNLESLLSDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFI 805
             + +               +               G  +H ++Q I     P  K    +
Sbjct: 1048 ISDEASSDRMVRKIQKPVFRRPKFLQSKQLTPAEIGTAMHMVMQHISFSECPNEKSLQSL 1107

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-SEVSVSGKINCPK----- 859
                 +   L   +        I     +      ++      EV  S  +   +     
Sbjct: 1108 LDDLKQKELLTEEQAEAIDQNKILAFFRSDTGQRVLNAHELHREVPFSMAVPVQEIDASA 1167

Query: 860  -----KDIIISGRIDQISISQQNIFIFEYKTH----HHVPQEIEH---IPYTHIAQLSIY 907
                 + +++ G ID I   +  + + +YKT      +     E    +   +  Q+ +Y
Sbjct: 1168 SADESETVLVQGIIDLIFRDEHGLVLLDYKTDTIDERYKGGYDEASPILLERYRVQIGLY 1227

Query: 908  EKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
             K ++  +        L +    +   + + 
Sbjct: 1228 TKAIERIWKETVNERYLYFFDVARELKVEKE 1258


>gi|291525355|emb|CBK90942.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale DSM
            17629]
          Length = 1220

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/1016 (13%), Positives = 301/1016 (29%), Gaps = 126/1016 (12%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +         P        +++ ++L         +     +Q+               +
Sbjct: 233  TMAKDLASATPGLEKYALTLSEDIALF---DGMADVTGYVGMQEFLNKISFGR-----IA 284

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                     +K    + +   +    + +K+               +        + L+ 
Sbjct: 285  VIRKFDGDEKKKERVKSMRDATKKKVDGIKQKYFGMSIELMYEQLERQRPFVKELIRLSL 344

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--VSAWIRYKIDQEINHILIDEVQDTS 189
                  E  K +  V DF D+      +L             +  +    I+IDE QD++
Sbjct: 345  EFYDAMEAVKTRKRVFDFSDIEHFALRILVDEQTLEPTETAREFSKHFEEIMIDEYQDSN 404

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +Q +++ +++ +       H     +F VGD KQSIY F  A P+  + +         
Sbjct: 405  QVQEDILTAISRE-------HQGVGNMFMVGDVKQSIYRFRMARPELFMEKYNTYTSD-- 455

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGT 307
                    I+L  +FRS  ++L   + +F     A    +  D    +   +S   +   
Sbjct: 456  --DSAHQRIDLHKNFRSRNEVLDFTNDIFYKIMAADLGNVQYDDDAALYPGASYPKETMR 513

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN-- 365
             +L        D     + E                I A  IA  I +++    +     
Sbjct: 514  PELLLVDYKDEDLSEIIEDED----------GDKVQIEALLIANRIRSLMENGMVTDKKT 563

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            G+ R +Q +DI++L R              +  D  I               I+ ++++ 
Sbjct: 564  GQLRAVQYRDIVILSRS---VATWGNTVAAVLKDCDIPAHVESNTGYFSSYEIQVILSML 620

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---ISKFQ 482
            R + +   D+    +L SP+    ++++ +I +           +   A        K +
Sbjct: 621  RILDNPLQDIPMAAVLASPIVGMDDEELAQIRSAFKGVSFAQAALSAMAGENGYEDEKLK 680

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                    L         H+   ++L      R       G      +D  +      E+
Sbjct: 681  AFALVFERLRGAVADTPIHELLYMMLDETGFYRYASAMPAGKRRRQNIDMLIEMAAAYEK 740

Query: 542  NSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             SY  L   +  ++     +           N + VRIMT+H +KGLE PVVF+   G  
Sbjct: 741  TSYKGLFHFVRYIDIQQKYEIDYGEADTAGENDDVVRIMTIHKSKGLEFPVVFVSGLGKG 800

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              +      + I   L          P++K  + I +++   +K+    E  R+LYV +T
Sbjct: 801  FNTQDTKSDLVIHEKLGLGLVEKTKSPRTKRPSLIRNEIESRIKRENLGEELRVLYVALT 860

Query: 657  RASDQLIICKHSNTSNEK------------------KSNQRTWYDMVYDSFHNDERVKKI 698
            RA +++I+    + + +                   +     + D V  +  +      +
Sbjct: 861  RAKEKIILTGGLSNAQKSFEKYRGNVNANQPISFGQREGAGCYLDWVIPAMLSYPDKYTV 920

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--LFSPIKNDINEPYI 756
               ++       A + + +      L    +       +++ ++        +DI +   
Sbjct: 921  STVDATEFAARTAMDMAANDISKAQLIGHISAADETKAKELAEEFDFEYAYASDITKKSK 980

Query: 757  LNPSTIDTKGKTNLESLLSDNQ-------------------------------------- 778
             + S +                                                      
Sbjct: 981  YSVSELKHDSMVEKYDSTEREAERPKFLLEEKETYVPDFARDDEAGGASNESKELKNAVG 1040

Query: 779  ---TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN-----------AKLWPAKEYKNL 824
                  RG  +H++++ +                +               +         
Sbjct: 1041 VNQGALRGTAVHRVMECLDFKSLCDIDTKDHVAVSAFVKKSMDEMLKKGLITDDMYRLTR 1100

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
               I + + + +       D   ++          + +++ G ID   +    I + +YK
Sbjct: 1101 PKLIEQFISSDVAARMAQADKRGDLYKEKPFVMDYEGVLVQGIIDVFWLENDKIVLLDYK 1160

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYP--NKSLVC--LLIY-VSEPKVFII 935
            T        + +   +  QL +Y   L   +    KS+     LIY     +  +I
Sbjct: 1161 TDRVNAA--KELIDRYSTQLKLYADALGRIFSTDGKSIQADERLIYSFRLQQTIVI 1214


>gi|153812830|ref|ZP_01965498.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174]
 gi|149831042|gb|EDM86131.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174]
          Length = 1233

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/1038 (14%), Positives = 326/1038 (31%), Gaps = 132/1038 (12%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            + +ES   + + L         +   Y   +    +  +L+ A+T  +        E   
Sbjct: 219  AADESIVQVRELLSRAAAICREESGPYFYEAALDDDILLLRAAETAVKERDYNGFSELLK 278

Query: 68   LLSSFFLTQKFTP----QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
                  L+ K       +K I  +++   +  L  +L +      +           +  
Sbjct: 279  NHKYARLSTKKDLSVDEEKKIQVKDLRDSAKGLWNELTEKYFNQTEEMILEYLQYCRRPM 338

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQEINH 179
                 +       + + K++  +LDF D+     D+L  ++      +   +++    + 
Sbjct: 339  EGLAEVTLQYKDAFADRKREQNILDFTDMEHFALDILMHKEGDTITPSAAAWELSARYDE 398

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +++DE QD++L+Q  +   +              + +F VGD KQSIY F  A P+  + 
Sbjct: 399  VMVDEYQDSNLVQEMITNLVA-------GWADKRKNIFMVGDVKQSIYRFRLARPELFME 451

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRH 297
            +             +   I+L  +FRS   +L+ V+ +F     E+  G++ +    +  
Sbjct: 452  KYHSYS----LEDSEEQRIDLHKNFRSRGTVLSSVNYLFRQIMGEDLGGITYEDENALYT 507

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM- 356
             +S   +    +   +V+                  +    ++   + A  IA  I  + 
Sbjct: 508  GASFPERADGKEPETEVLLIEKDGEE---------LEEQGNQTVQELEALAIAQRIQKLV 558

Query: 357  -IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             I       +G  R     DI++L+R    +         +     I V    R      
Sbjct: 559  GIEEVLDKDSGTYRKAGYGDIVILLRT---SAGWAEPFSQVLASKGIPVYTASRTGYFAA 615

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------- 467
              +  L+   R   +   D+    +L S +   +  ++  I ++  +             
Sbjct: 616  QEVVTLLNYLRICDNPMQDIPLTGVLHSAIGGCNTQELAIIRSKCPDGMLYESLLAFRER 675

Query: 468  --EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNE 524
              +   +       K  H I+ + E+  +A +   H+    IL          +   G +
Sbjct: 676  KTDDRDEEELVLREKISHFIELLEEMRDLAVYTPVHELIQYILRKTGYGDYVRVIPGGAQ 735

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHT 579
                L   +   +  E+ SY  L   +  +E     +          A +  V+IMT+H 
Sbjct: 736  RGANLHMLVEKAMEYEKTSYRGLFNFVRYIEKLQKYEVDFGEVNLADAGNGAVQIMTIHK 795

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            +KGLE P+VF    G Q        +  I P +     + +   +          + + L
Sbjct: 796  SKGLEFPIVFAAGMGKQFNFQDINSRFLIHPDMGFGVDVILPEKRLILSTVHKQIIRRQL 855

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRT 680
            K+ +  E  R+LYV +TRA ++LII        +                    +   R 
Sbjct: 856  KRESLGEELRVLYVALTRAKEKLIITGTIAKLADVLQAVSWQMGRRETLLPIGTRGEARN 915

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI---------- 730
            ++  +  +    E +  +     I   +    E      +   +   E +          
Sbjct: 916  YWSFILPALARHEAMLPLFREYGIADRQIQVCEMEHAEFKVQKITAAELVQGEILGQTDS 975

Query: 731  -----------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES- 772
                             +++ +          P +   + P  ++ S +  +     E  
Sbjct: 976  QMQEKLLKEWDSRKIYDEEIHEILTERFAFRYPFEYLKDLPVKVSVSELKKRSWRGEEEK 1035

Query: 773  --------------------LLSDNQTFNRGLIIHKLLQVIFTLPEHK--RKNFITSYCT 810
                                   + +   RG   H+L++ +         +        T
Sbjct: 1036 EESLFYEPDIQEIIPTFVSGEKEEYRGAARGTAYHRLMECLDYTHAEDVHQIQKQIRMLT 1095

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS----YSEVSVSGKINC--------P 858
             + K+ P +     +  I   +++ +     +       Y E                  
Sbjct: 1096 DSRKMSPEEAQCIRIADILAFVDSKLGQRMKTAAEQNALYREQPFVIAQKMNQIEAAWNG 1155

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            ++ +++ G ID   I    I + +YKT    P   + +   +  QL  Y   L+     K
Sbjct: 1156 EETVLVQGIIDAYFIEDDEIVLVDYKTDKVSPGGEQDLIDLYHIQLEDYAAALERMLQKK 1215

Query: 919  SLVCLLIYVSEPKVFIIP 936
                 +   +  K+  + 
Sbjct: 1216 VKETYIYSFTLRKMIPLS 1233


>gi|302385434|ref|YP_003821256.1| recombination helicase AddA [Clostridium saccharolyticum WM1]
 gi|302196062|gb|ADL03633.1| recombination helicase AddA [Clostridium saccharolyticum WM1]
          Length = 1229

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/987 (16%), Positives = 320/987 (32%), Gaps = 124/987 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEE-----RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
               L+    L  A   + + E      F  L+S    +    +K  +T  I  +      
Sbjct: 252  AHDLQMLDRLYLAENYEALNEQLKNVSFDRLASIRSKEIDGEKKAFVT-GIRDRVKKAVG 310

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            KL +            +      +    L+LA      Y + K++  ++DF DL     +
Sbjct: 311  KLLEFYCFESPKEVLSDIRGSRDAVTTLLSLAGEYGDKYRDKKREKNLVDFNDLEHYALE 370

Query: 159  LLKKRDVS----AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            +L  ++        +  ++ ++   IL+DE QD++ +Q  +I S++ +            
Sbjct: 371  ILLDKEEGKTVTTQVADELSRQYEEILVDEYQDSNDVQEALINSISRE-------RFGTP 423

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             +F VGD KQSIY F  A P+  L +             K+  IEL  +FRS  ++L  +
Sbjct: 424  NVFMVGDVKQSIYQFRLARPQLFLEKYDSYSVD----EGKYQKIELHQNFRSRDEVLKGI 479

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            ++VF         +       +  +   G                   +          D
Sbjct: 480  NEVFYQIMTR---NLGDIPYTKDAALHPGAEFLKADGRLGEKPELLMIHGSGNLIKQLDD 536

Query: 335  SLPQESSASILARRIAYTISNM--------IGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
               + +S  + A+ IA+ I  +        +    +   G  RV +  D+++L+R     
Sbjct: 537  DGAECTSREMEAKTIAWKIKELTDPVKGLLVWDKGLEGKGGYRVAEYGDMVILLRSLSGW 596

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                     +  +  I      +        ++ ++++   I +   D+    +LKSP+ 
Sbjct: 597  A---EDFVSVLMNEGIPAYAERKTGYFTAPEVETVLSMLNIIDNPMQDIPLAAVLKSPMG 653

Query: 447  NFSEDDIFKICT------QRHETETVYEYIQKFANCGI-----------SKFQHVIKYIH 489
              +++++  +        ++ +   +Y   Q +                 K +     + 
Sbjct: 654  RVTDEEMAHLMAVWKKTAKKGQDRGLYGAWQHYRKEYEGGGDPEYPELFKKLEDFNSMLS 713

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
                 + + S H+    +               G      L   +      E+ SY+ L 
Sbjct: 714  IYREKSSYLSIHELLFDLYEGTGYYDYISAMPAGEVRRANLSMLVEKASAYEKTSYTGLF 773

Query: 549  ELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
              I  +E            + +   N VR+M++H +KGLE PVVFL   G +        
Sbjct: 774  HFIRYIENLKKYDTDFGEASLAGEDNTVRVMSIHKSKGLEFPVVFLAGMGKKFNKQDAYG 833

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            K+ I P L           + K+       L + ++     E  R+LYV MTRA ++L++
Sbjct: 834  KILIDPDLGIGTDYLDLERRLKAPTLKKHALRRKMELGAMGEELRVLYVAMTRAKEKLVM 893

Query: 665  CKHSNTSNEK------------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                   ++K                   S+  ++ D +  S      + +I      + 
Sbjct: 894  TGLDRYLDKKLERFAEIMRVEGQIPFTILSSADSYLDWMLMSLSGKYSLSQILSEEGADT 953

Query: 707  DEWIAYEWSTHHPENTPLEREETI-----------------KQLMDEQKIPKKLFSPIKN 749
               I  E S        +ER+                    ++   E K   +   P   
Sbjct: 954  GSLIVKELSVPDLVGGEMERQAEKKLTKDALLSLDTERSYDQEFGAELKAAFEYRYPYLA 1013

Query: 750  DINEPYILNPSTIDTKGK----------------TNLESLLSDNQTFNRGLIIHKLLQVI 793
            D      +  S +  +G+                   E          RG   H+ L+++
Sbjct: 1014 DTRLHTKVTVSELKKQGQFTDEEESGFLPAIPAFLREEGKKEKTGGAFRGTAYHRALELL 1073

Query: 794  FTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLLSI-TRLLENPMMTTAMSCDS----Y 846
                       + +     +  +    +    L   +    L +P+ T   +        
Sbjct: 1074 DFGMVTT-GEALRNALEGFRKDRRMDEESLSQLSEHVLLSFLTSPLGTRLAAAQREGRLK 1132

Query: 847  SEVSVSGKINCP-------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
             E      I           + I+I G ID     +  + + +YKT    P E + +   
Sbjct: 1133 KEQQFVVGIPARDMDAGDSDERILIQGIIDAYMEEEDGLVLLDYKTDFIRPGEEKVLVNR 1192

Query: 900  HIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +  Q+  Y++ L+     K +   +IY
Sbjct: 1193 YQTQMDYYQRALEQM-TGKRVREKIIY 1218


>gi|325261823|ref|ZP_08128561.1| ATP-dependent nuclease subunit A [Clostridium sp. D5]
 gi|324033277|gb|EGB94554.1| ATP-dependent nuclease subunit A [Clostridium sp. D5]
          Length = 1263

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 140/986 (14%), Positives = 302/986 (30%), Gaps = 130/986 (13%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS------- 103
              L+   + +  E  +  +      +    +   +  E   +   L+EK+KK        
Sbjct: 288  AALENLVRQETFEGMYQSVQGIAWKRLSAKKDESVDVEKRDQVKALREKVKKMVKDITGM 347

Query: 104  --QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
               +E  +I        +       + L K     +   K+   ++DF D+      +L 
Sbjct: 348  YFYEEPEEILKDMKESAVS--MQVLIDLVKQFGEAFSGKKQSKNMIDFNDMEQFALRILT 405

Query: 162  KRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
              +    +      +   +   ++IDE QD++LIQ  ++                   +F
Sbjct: 406  VEEDGKLVPSLSAAEYQDQFLEVMIDEYQDSNLIQEAIL-------TSVSTVSRGRNNIF 458

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGD KQSIY F  + P+  + +     +           I+L  +FRS  ++L  V+ +
Sbjct: 459  MVGDVKQSIYRFRLSRPELFMEKYDTYSQE----DSDRQRIDLHRNFRSRDEVLGSVNFI 514

Query: 278  FSIPENA--QGLSEDSTTTIRHRSSR---------------------IGQVGTVQLWEQV 314
            F         G+  D    +   +S                             +  +  
Sbjct: 515  FEQIMRKELGGILYDEQAALYPGASYEPQLDEQGKSINQAELILVDTSDDHEAGESSQTG 574

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQ 372
              +       +  +  +        +     AR +A  I  ++    +     G  R  +
Sbjct: 575  EDKAADAGAEEGRTTETQAARPSAGTGREREARAVARRIKELLKYGRVLDKASGTYRAPR 634

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             KD+++L R  K       +   +  +  I      R    +   +  L+   R + +  
Sbjct: 635  YKDMVILTRSIKGWA---DVFAAVLGEEGIPAYAGSREGYFETYEVSVLLDYLRILDNFM 691

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG------ISKFQHVIK 486
             +L    +L SP    +   +  I          YE +QK+A+            +  ++
Sbjct: 692  QELPLTAVLTSPFAGLNVQQLADIRNAFP-GIPFYEAVQKYADAAEGGGVLQRLLREFLQ 750

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             +     +  + + H+    I+              G +    ++  +      E  SY 
Sbjct: 751  ELEHFREMVPYTAIHELLWHIIEDTGYGLYIASMPGGAQREANVEMLVEKASAFEGTSYK 810

Query: 546  SLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             L   +  +EQ                  + VRIM++H +KGLE P+VF+   G Q  + 
Sbjct: 811  GLFNFVRYIEQLKKYDVDYGEANIADEQSDTVRIMSIHKSKGLEFPIVFVCGMGKQFNTQ 870

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                 + I P             +++    +   + + + +    E  R+LYV +TRA +
Sbjct: 871  DTKGSIVIHPEWGVGIDAIDLEKRTRIPTILKKVIQEEITRENLGEELRVLYVALTRAKE 930

Query: 661  QLIICKH------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            +LI+               +  +   +     +Y +     + D  +  I         E
Sbjct: 931  KLIMTGELPHALEVLEQNGAGQTTGGRKEPLPYYVLSGARTYLDWLLPLIPRLTEQIPLE 990

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPK---------------KLFSPIKNDINE 753
             +  +        T  ++ E++ + + E    +               +   P + +   
Sbjct: 991  VLVADCFAEEAAETAGQQAESLARDVLEHWNTENIYDKELRESLPGQLEYKYPYEQEGKL 1050

Query: 754  PYILNPSTIDTKG-------------------KTNLESLLSDNQTFNRGLIIHKLLQVIF 794
                  S +  +                             +    +RG   HKLL+++ 
Sbjct: 1051 KLKFTVSELKKRAYLSEESGEELYEEPEVVPLLPEFLKEEIELTGASRGSAYHKLLELLD 1110

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKN--LLLSITRLLENPMMTTAMSCD----SYSE 848
               ++             A+   + +      +  I   L                   E
Sbjct: 1111 FSVQYDEIALEKEIVRLQAEGKLSDDMAECIRIRDILAFLHCESGQRMHRAAQKQLLKKE 1170

Query: 849  VSVSGKINCPK--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
                  ++  +        + I++ G ID      + + + +YKT     +    +   +
Sbjct: 1171 QPFVLGVDAREIYPGEDSAETILVQGIIDVYFEEDEELVVLDYKTDKV--RTARDLQEKY 1228

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIY 926
             +QL  Y + L+     K +   +IY
Sbjct: 1229 HSQLDYYAQALEQL-TEKKVKEKIIY 1253


>gi|167038872|ref|YP_001661857.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514]
 gi|300913540|ref|ZP_07130857.1| recombination helicase AddA [Thermoanaerobacter sp. X561]
 gi|307723445|ref|YP_003903196.1| recombination helicase AddA [Thermoanaerobacter sp. X513]
 gi|251764574|sp|B0K213|ADDA_THEPX RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|166853112|gb|ABY91521.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514]
 gi|300890225|gb|EFK85370.1| recombination helicase AddA [Thermoanaerobacter sp. X561]
 gi|307580506|gb|ADN53905.1| recombination helicase AddA [Thermoanaerobacter sp. X513]
          Length = 1233

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/1002 (15%), Positives = 350/1002 (34%), Gaps = 131/1002 (13%)

Query: 36   SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95
               +E       ++A  ++Q  Q     E  + + +    +     K+   + + ++  +
Sbjct: 244  EAGLEGYFHAFQREAYEIEQLLQYDNWNEFKNHIQAIEFERLPNAGKD-ANKNVKEEVSN 302

Query: 96   LKEKLKKSQ---------DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++K+K            D   +I+D       +    A   L    +  Y+E K++  +
Sbjct: 303  IRKKVKDKIKEIKEKFFSDSVEEIKDEIKAL--YPIMEALADLILLFDKKYKEKKREKGI 360

Query: 147  LDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            +DF D+      +L + D       + +     ++   I +DE QD++LIQ E++  +  
Sbjct: 361  IDFNDIEHFALQILTEIDEEGDVNPSEVALHYREKFEEIFVDEYQDSNLIQEEILSIIAR 420

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +         +P   F VGD KQSIY F  A P     +         + G+K   I L 
Sbjct: 421  E---------NPPNRFMVGDVKQSIYRFRQANPYIFFEKYNSYS---LDTGEKNQKILLY 468

Query: 262  LSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQV------GTVQLWEQ 313
             +FRS  +++  ++ +F      N   ++      + + +            G V+L   
Sbjct: 469  KNFRSRIEVIEAINYIFKKIMSKNIGEVNYTEEEKLNYGAEYEIPPEDSVTGGAVELHLI 528

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQE----SSASILARRIAYTISNMIGTDTIFSNGK-- 367
               + + +   ++E      D   +E        + AR +A  I  +   + +  +    
Sbjct: 529  EKQKVEEEVEEKEEEKNEEKDFEEEEEDLIDDIQVEARVVAERIKQLFSQNFMVYDKNIK 588

Query: 368  -KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R +  +DI+VL+R    T     +         I    +      D   IK +++L +
Sbjct: 589  SYRAVDYRDIVVLLRA---TDRWAPVFLEELTQAGIPAFADTGTGYFDTTEIKTIISLLQ 645

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI--SKFQHV 484
             I +   D+  + +L+SP+F+F+E+++  +  +  E        +          K ++ 
Sbjct: 646  VIDNPMQDIPLLAVLRSPIFSFTEEELIDLRLEDMEKTIYEAIKKASQREDELGEKAKNF 705

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543
            +  + +    A +    +F   +           +   G +    L        + E+ S
Sbjct: 706  LDTLKKWQEKAVYMPVDEFLWYLYKDTGYYSYVAAMPQGVQRQANLRILFERAKQYEETS 765

Query: 544  YSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +  L   I+ +             +    N   VRIM++H +KGLE PVV +   G Q  
Sbjct: 766  FKGLFNFINFINRLKVSSGDMGSAKIVGENEKVVRIMSIHKSKGLEFPVVIVAGLGKQFN 825

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +    +K+     L   P    +  +    + +   +   +K     E  R+LYV +TRA
Sbjct: 826  TKDLYQKILYHHFLGLGPEFVDFRRRISYPSIVKEAIKYKIKLEGLSEEMRVLYVALTRA 885

Query: 659  SDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKL 700
             ++LI+   +    +                       +++ D +  +    + ++ ++ 
Sbjct: 886  KEKLILVGSARDIKKNVRKWANAAILQEKVSEYDILNGKSYMDWIGAAVIRHKDLEPLRE 945

Query: 701  TNSI---NKDEWIAYEWSTHHPENTPLERE-------------------------ETIKQ 732
               +    +++   +E    + ++  LE+E                         E  ++
Sbjct: 946  FAGVSLSEEEDASKWEVKLWNKKDVLLEKEKNDKVDVVERLRSLDLDAHYSEFYKEVERR 1005

Query: 733  LMDEQKIPKKLFSPIKNDINEPYIL-----------NPSTIDTKGKTNLESLLSDNQTFN 781
            L       K  + P K  + E   +           +    +                  
Sbjct: 1006 LNYVYPYEKACYLPAKLSVTEVKRILNAEVVDEDTTSIFEREVLKTPIFLEKKKGLTAAE 1065

Query: 782  RGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMM 837
            +G+ +H ++Q +     L     K  I     +   +   ++ K + +  I    +  + 
Sbjct: 1066 KGIAMHLVMQKLDLDKDLSLEGIKEQIKDMVDRE--ILTEEQAKEVNIHKIEGFFKTSLG 1123

Query: 838  TTAM-SCDSYSEVSVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFEYKT 885
               + S +   EV    K+               + I + G ID     +  + + +YKT
Sbjct: 1124 ERMLSSKNVKREVPFHIKLSSREIYKDLPEEYENEFIQVQGIIDCFFEEEDGLVLIDYKT 1183

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             +    ++E I   +  Q+ +Y K L++    K +    IY+
Sbjct: 1184 DYVQEGKVEEIKERYKVQIELYSKALENI-TGKKVKEKYIYL 1224


>gi|255282638|ref|ZP_05347193.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM 14469]
 gi|255266931|gb|EET60136.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM 14469]
          Length = 1237

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 168/1043 (16%), Positives = 317/1043 (30%), Gaps = 144/1043 (13%)

Query: 2    KNRFGLSLNE-SYELIYKDLWPLP----YFQVSDINKYVSLSMETGNP--------TILK 48
            ++ + LS  E       + L  L         + I + ++++     P          L+
Sbjct: 204  RDAYDLSAEEFDETAWVRQLQQLSTQILEEVRAQIEEALAIAESPDGPYPYCDALEADLQ 263

Query: 49   KAQTLQQASQTQCIEERFSLLSSFFLTQKFT----PQKNIITQEINKKSPDLKEKLKKSQ 104
             A  L               +S   L+ K       +K    + + +      E L+   
Sbjct: 264  LADALLAEKTYTGRCAAMQQISWTRLSAKKDASVSEEKKQQVKNLRESYKKAVEDLRTEF 323

Query: 105  DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                                          A Y   K K  ++DF+DL      +L  R 
Sbjct: 324  YSSPAETAAAAMRDCAPVVAGITEFVSRFAARYAAEKVKKNMMDFDDLEHFALQILVTRR 383

Query: 165  V----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                    +  +       ILIDE QD++L+Q  ++ S+++        HS    LF VG
Sbjct: 384  DGKLCPTPVAEEFAAHYEEILIDEYQDSNLVQELILTSISKK-------HSGGHNLFMVG 436

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D KQSIY F  A P+    +      R          I+L  +FRS + +LT V+ +F  
Sbjct: 437  DVKQSIYRFRLARPELFTEKYDSY--RTGEPQAAQRRIDLHRNFRSRSQVLTFVNFLFEQ 494

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                   + +               G                    ++        P+ES
Sbjct: 495  IMEKHLGNVEYDDAAALYPGAEFAPG-------DDDAFRDTEVLLIDAEAEEEKEKPEES 547

Query: 341  SASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            +  + A  +A  I+ ++G + ++ N  G  R  + +DI++L+R              +  
Sbjct: 548  ARELEAYAVAQRIAGIVGKELVWDNALGAYRRAEYRDIVILLRT---IQGWAEPFAKVLT 604

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
            +  I      R        ++ +++L R I +   D+    +L SP+   S  ++  I +
Sbjct: 605  EQDIPAHTGSRTGYFSTTEVQTVLSLLRVIDNPRQDIPLTAVLHSPIVWLSAGELAAIRS 664

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     +     A             + E   +A +   H+    I           
Sbjct: 665  AHP------QMPFYEACMQEPSLADFFAMLAEFRRMAAYTPIHELLWYIFERTGYAAYAA 718

Query: 519  S-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVR 573
            +   G++    LD  +   +  EQ SY  L   +  +E                  N VR
Sbjct: 719  AMPGGSQRKANLDMLVEKAIAYEQGSYRGLYNFVRYIENLHKYDVDFGEAASGEQENAVR 778

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+++H +KGLE P+VF+   G Q+      K + +   L           + +S   +  
Sbjct: 779  ILSIHKSKGLEFPIVFVCGMGKQMNQSDARKSVVLHADLGIGCDRTDPKLRIRSATLLKR 838

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK------------------- 674
             + ++  +    E  R+LYV +TRA ++LI+        +K                   
Sbjct: 839  FMKRYTVQENLGEELRVLYVALTRAKEKLILTGTVTKLADKLQKWGQVCRREGTVLPFTL 898

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY---------------------- 712
            +++  T++D +  S   +     +     + +D                           
Sbjct: 899  RAHASTYWDWLIPSLLRNRCFAPLAEEYGVYQDHSHPLFSREIFCRVTYLPVRELTGAEK 958

Query: 713  -----EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG- 766
                  + T     +         +   +             +   P  ++ S +     
Sbjct: 959  QRQKKLYMTREKLLSLSPEAVFDAKAAQQLAENLSFCYAYGGEEKIPAKVSVSELKKYAQ 1018

Query: 767  -------------------KTNLESLLSDNQTFNRGLIIHKLLQVIF-----TLPEHKRK 802
                                       S+     RG I HKL++ +           K  
Sbjct: 1019 FDELEDGELLFEEPAPVPLIPEFLQEKSEVSGAARGTIYHKLMECLDFTLFADTSVQKDT 1078

Query: 803  NFITSYCT------KNAKLWPAKEYKNLLL-SITRLLENPMMTTAMSCDSY----SEVSV 851
              +  +        + A    A+E + +    +   L++P+               E   
Sbjct: 1079 AEMRRFLEAETGRLQRAGHLKAEEAELISEKKLLAFLKHPLAQRMAQAAVRGQLFREQQF 1138

Query: 852  SGKINCPK--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
               +              ++I G ID   I    I + +YKT     +E   +   +  Q
Sbjct: 1139 VLSVPAGDIRREWQAGGPVLIQGIIDAYFIEDGQIVLVDYKTDFVKFEEASSLYRKYAVQ 1198

Query: 904  LSIYEKILKDSYPNKSLVCLLIY 926
            L  YE  L     +  +   LIY
Sbjct: 1199 LDYYEIALTRL-AHLPVSEKLIY 1220


>gi|188589987|ref|YP_001919480.1| recombination helicase AddA [Clostridium botulinum E3 str. Alaska
            E43]
 gi|251764510|sp|B2UX57|ADDA_CLOBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|188500268|gb|ACD53404.1| ATP-dependent nuclease subunit A [Clostridium botulinum E3 str.
            Alaska E43]
          Length = 1244

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 148/949 (15%), Positives = 298/949 (31%), Gaps = 126/949 (13%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            ++I  +       L +        +   N  K +        L       +   KK+  +
Sbjct: 303  KQIRDQVKKKISALIEGTFIATPDKMLDNIIKSYPYINQLTELTSEFIDRFNAKKKEKNI 362

Query: 147  LDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            LDF DL      +L     + + V + I  K       +L+DE QD++ +Q  +I  ++ 
Sbjct: 363  LDFNDLEHLCLKILIEDNEENQIVPSTIAQKFKDYFEEVLVDEYQDSNNVQEAIIELVSR 422

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +S    +F VGD KQSIY F  A+P+  + +                 I+L 
Sbjct: 423  K-------NSDNPNVFMVGDVKQSIYKFRQAKPELFIDKYNSYSLD----KGINRKIQLY 471

Query: 262  LSFRSTADILTVVDKVFSIPEN--AQGLSEDSTTTIRHRSSRIGQVGTVQLW--EQVVSQ 317
             +FRS  +++  V+ +F    +     L       +   +S   +     +      V  
Sbjct: 472  KNFRSREEVINGVNYIFKSVMSKTVGELEYTDVEALNLGASYPKKKNVDDIIGGPIEVHI 531

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRV 370
             D   N ++   +       +    ++ AR I   I+++I               G+ R 
Sbjct: 532  LDRSDNKEENDESKLQAEEEEIGDVNLEARIIVKRINDLISKKDGSKFKVLDKDTGEYRD 591

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++ KDI++L+R  K+      +         I V  +      + + I+ +M+L + I +
Sbjct: 592  LKYKDIVILLRATKNWS---EVLLDELGLAGIPVYADTGSGYFESIEIRTIMSLLKVIDN 648

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ-----KFANCGISKFQHVI 485
               D+  + +L SP+   S +++  I     E       I+       +     K ++++
Sbjct: 649  PMQDVPMLSLLISPIIGLSAEELTDIRLIDKEKYFYENIIKISTEKLISEELQEKCEYIL 708

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSY 544
              I +    + +    +F   +               G      L        +  + S+
Sbjct: 709  SSIDKWRRKSIYMPIDEFIWYLYMDTAYYGYVGAMPNGVLRQANLKILFQRARQFSETSF 768

Query: 545  SSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              L   I+ +             +    N + VRIM++H +KGLE PVVFL   G     
Sbjct: 769  KGLFNFINFINKLTKSSGDMGSAKILGENEDVVRIMSIHKSKGLEFPVVFLAGCGKNFNL 828

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 K+     L   P       ++         + K +K  T  E  R+LYV  TRA 
Sbjct: 829  MDLNNKILYHEELGLGPEYINLENRTSITTLPKEAIKKRMKLETLSEEMRVLYVAFTRAK 888

Query: 660  DQLIICKHSNTSNEKKSNQ-------------------RTWYDMVYDS------------ 688
            ++LII      + +                        +++ D +  +            
Sbjct: 889  EKLIITGAVRNAEKSIEKWINSAVLDKDVILPYEISKGKSYLDWIGMALCKHKDGKILRK 948

Query: 689  --------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                      +D  + KI + N    D +   + +    +      ++ + + +  +   
Sbjct: 949  KLGFSSEMCKDDLSMWKISIWNKYELDMYDELDENQEELDVKISILDKDVNKKVKSEVYR 1008

Query: 741  K-KLFSPIKNDINEPYILNPSTIDTKGK------------------------TNLESLLS 775
            +       K        ++ S +  +                                  
Sbjct: 1009 RLGYEYEFKESTKLTSNISVSDLKRRNMNDNIDTLEIFDLEEEDNKNKDVITPKFLQEKK 1068

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLE 833
               +  RG  IH  ++ I        K          +   +   +        I    +
Sbjct: 1069 GISSAERGTAIHFAMKKIDFSKVGTLKEIKEQLNKLYEEEFILQEEYSSINPYKILSFFK 1128

Query: 834  NPMMTTAM-----SCDSYSEVSVSGKIN-----------CPKKDIIISGRIDQISISQQN 877
            + +    +         Y E+    +I+              + I + G ID        
Sbjct: 1129 SNLGKKMLDVYNKGGKIYREIPFHTEISSLELDESLPQKYANEKIRLQGIIDCFFKCDDE 1188

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            I + +YKT +   +  E     + +QL  Y + +      K +    +Y
Sbjct: 1189 IILLDYKTDYV--ENEEEFKEKYKSQLLYYSEAVFKM-TGKKVNKRYLY 1234


>gi|319646646|ref|ZP_08000875.1| AddA protein [Bacillus sp. BT1B_CT2]
 gi|317391234|gb|EFV72032.1| AddA protein [Bacillus sp. BT1B_CT2]
          Length = 1230

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 162/1033 (15%), Positives = 332/1033 (32%), Gaps = 141/1033 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFF 73
            I +D+  +       + + + L+ + G P          L Q  +    ++ FS L    
Sbjct: 222  IKEDIALVLEGMRQKLTRALDLTKQPGGPAPRAENFLDDLAQIDRLIQQQDDFSALHELV 281

Query: 74   LT-----------QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
             T            ++ P+      ++   +    EKLK         +   +  +M   
Sbjct: 282  PTVSFQRLKPCKGDEYDPRLVDEAADLRNSAKKQLEKLKSDYFSRTPEQHLESLREMKPV 341

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-----KRDVSAWIRYKIDQEI 177
                + L       + EAKK+  ++DF DL  +   +L         V +        + 
Sbjct: 342  IQTLVQLVLEYGRRFAEAKKEKAIVDFSDLEHDCLAILSVKNPAGEAVPSEAAKFYRHQF 401

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            + +L+DE QDT+L+Q  +++ + ++   G         LF VGD KQSIY F  AEP   
Sbjct: 402  HEVLVDEYQDTNLVQEAILKLVAKEEHEG--------NLFMVGDVKQSIYRFRLAEPLLF 453

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L + +      + +G     I+L  +FRS +DIL   + +F      +    +       
Sbjct: 454  LSKYKRFTDDGSGSG---QKIDLNKNFRSRSDILDSTNFLFKQLMGEKVGEVEYDEQAEL 510

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            +             E ++ +  S          +  +   +  +  + AR +A  I  +I
Sbjct: 511  KLGASYPPNEATKTELLLIETPSG---------APGEEAEELEAVQLEARAMAGQIRRLI 561

Query: 358  GTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                   + K    R IQ +DI+VL+R     P I    +       I V  N      +
Sbjct: 562  TEKFQVYDAKAKASRNIQYRDIVVLLRSMPWAPQIMDEFK----QQGIPVYANLSTGYFE 617

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF- 473
               +   ++L + I +   D+    +L+SP+    E+++  +   + +    YE ++ + 
Sbjct: 618  ATEVSVTLSLLKIIDNAYQDIPLASVLRSPVVGLDENEL-SLIRIKDKKAPFYEAMKAYL 676

Query: 474  -----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVID 527
                       K +     + +    A+  S  +    I    K          G +   
Sbjct: 677  AAADGDERLSEKLRRFDGLLKKWRAYAKNHSVAELIWEIYRDTKYLDYVGGMPGGKQRQA 736

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKG 582
             L    +     E  S+  L   +  +E+           RA S   + VR+MT+H++KG
Sbjct: 737  NLRALYDRARSYEATSFRGLFRFLRFIERMQERGDDLGTARALSEQEDVVRLMTIHSSKG 796

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PVVF    G         K   +   L           +       +  + K L++ 
Sbjct: 797  LEFPVVFTAGLGRNFNMMDLNKSYLLDKELGFGTKFIHPKWRISYPTLPLIAMKKKLRRE 856

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYD 683
               E  R+LYV +TRA ++L +   +    +                   ++   +++ D
Sbjct: 857  LLSEELRVLYVALTRAKEKLYLVGTAKDKEKLLADWRTQAAGSEWLLPDYERFQAKSYLD 916

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI---- 739
             +  +      + +      I++       +         L+ E   +   +        
Sbjct: 917  FIGPALMRHRDMDESGAPPVIDEIREHPARFQVSWLSAADLQAEAVDQAGEERHDRLVQI 976

Query: 740  ------------------PKKLFSPIKNDINEPYILNPSTIDTKGK-------------- 767
                                    P K+        + S +  + +              
Sbjct: 977  QMGHAIEGAFEYEQQVRERLAWSYPYKDAAKVRTKQSVSEMKRQKEYEDEYGDRSLIRPS 1036

Query: 768  -------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPA 818
                        +        RG  +H ++Q I      + KN ++    +    +L   
Sbjct: 1037 QEALLFKRPSFMMAKGLTAAERGTAMHTVMQHIPLTRTPE-KNELSRLLDRLVEKELLTE 1095

Query: 819  KEYKNLLL-SITRLLENPMMTTAM-SCDSYSEVSVSGKINC---------PKKDIIISGR 867
             +   +    I    +  +    + +     EV  +  ++            + ++I G 
Sbjct: 1096 DQRAAIEEDDILAFFDTEIGQKLLGARRVEREVPFNMTLSAKEVYPDLESADEPVLIQGI 1155

Query: 868  IDQISISQQNIFIFEYKTHHH-------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
            ID +  ++   ++ +YKT                 +   +  Q+ +Y + ++        
Sbjct: 1156 IDCLFETEDGFYLLDYKTDRIHGKYRNGFEGAEPILRKRYETQIQLYARAVETMIKMPLK 1215

Query: 921  VCLLIYVSEPKVF 933
               L +     V 
Sbjct: 1216 GRALYFFDGGHVL 1228


>gi|149004237|ref|ZP_01829024.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69]
 gi|147757787|gb|EDK64800.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69]
          Length = 1421

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 160/1019 (15%), Positives = 335/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 445  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 504

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 505  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 564

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 565  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 621

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 622  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 670

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 671  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 726

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES           +  +   R +   I  +    
Sbjct: 727  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTGTKLTGEMRLVIKEILKLHQE- 777

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 778  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 825

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 826  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 885

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 886  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 945

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 946  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 1005

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 1006 KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 1065

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 1066 SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 1125

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 1126 NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 1185

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ +   K  +   +  +  I  P +  PS I    +                  
Sbjct: 1186 QSDTIKEALKMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1245

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1246 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1302

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1303 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1362

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1363 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1419


>gi|291527058|emb|CBK92644.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale
            M104/1]
          Length = 1220

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 139/1016 (13%), Positives = 300/1016 (29%), Gaps = 126/1016 (12%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +         P        +++ ++L         +     +Q+               +
Sbjct: 233  TMAKDLASATPGLEKYALTLSEDIALF---DGMADVTGYVGMQEFLNKISFGR-----IA 284

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                     +K    + +   +    + +K+               +        + L+ 
Sbjct: 285  VIRKFDGDEKKKERVKSMRDATKKKVDGIKQKYFGMSIELMYEQLERQRPFVKELIRLSL 344

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--VSAWIRYKIDQEINHILIDEVQDTS 189
                  E  K +  V DF D+      +L             +  +    I+IDE QD++
Sbjct: 345  EFYDAMEAVKTRKRVFDFSDIEHFALRILVDEQTLEPTETAREFSKHFEEIMIDEYQDSN 404

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +Q +++ +++ +       H     +F VGD KQSIY F  A P+  + +         
Sbjct: 405  QVQEDILTAISRE-------HQGVGNMFMVGDVKQSIYRFRMARPELFMEKYNTYTSD-- 455

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGT 307
                    I+L  +FRS  ++L   + +F     A    +  D    +   +S   +   
Sbjct: 456  --DSAHQRIDLHKNFRSRNEVLDFTNDIFYKIMAADLGNVQYDDDAALYPGASYPKETMR 513

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN-- 365
             +L        D     + E                I A  IA  I +++    +     
Sbjct: 514  PELLLVDYKDEDLSEIIEDED----------GDKVQIEALLIANRIRSLMENGMVTDKKT 563

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            G+ R +Q +DI++L R              +  D  I               I+ ++++ 
Sbjct: 564  GQLRAVQYRDIVILSRS---VATWGNTVAAVLKDCDIPAHVESNTGYFSSYEIQVILSML 620

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---ISKFQ 482
            R + +   D+    +L SP+    ++++ +I +           +   A        K +
Sbjct: 621  RILDNPLQDIPMAAVLASPIVGMDDEELAQIRSAFKGVSFAQAALSAMAGENGYEDEKLK 680

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                    L         H+   ++L      R       G      +D  +      E+
Sbjct: 681  AFALVFERLRGAVADTPIHELLYMMLDETGFYRYASAMPAGKRRRQNIDMLIEMAAAYEK 740

Query: 542  NSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             SY  L   +  ++     +           N + VRIMT+H +KGLE PVVF+   G  
Sbjct: 741  TSYKGLFHFVRYIDIQQKYEIDYGEADTAGENDDVVRIMTIHKSKGLEFPVVFVSGLGKG 800

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              +      + I   L          P++K  + I +++   +K+    E  R+LYV +T
Sbjct: 801  FNTQDTKSDLVIHEKLGLGLVEKTKSPRTKRPSLIRNEIESRIKRENLGEELRVLYVALT 860

Query: 657  RASDQLIICKHSNTSNEK------------------KSNQRTWYDMVYDSFHNDERVKKI 698
            RA +++I+    + + +                   +     + D V  +  +      +
Sbjct: 861  RAKEKIILTGGLSNAQKSFEKYRGNVNANQPISFGQREGAGCYLDWVIPAMLSYPDKYTV 920

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--LFSPIKNDINEPYI 756
               ++       A + + +      L    +       +++ ++        +DI +   
Sbjct: 921  STVDATEFAARTAMDMAANDISKAQLIGHISAADETKAKELAEEFDFEYAYASDITKKSK 980

Query: 757  LNPSTIDTKGKTNLESLLSDNQ-------------------------------------- 778
             + S +                                                      
Sbjct: 981  YSVSELKHDSMVEKYDSTEREAERPKFLLEEKETYVPDFARDDEAGGASNESKELKNAVG 1040

Query: 779  ---TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN-----------AKLWPAKEYKNL 824
                  RG  +H+ ++ +                +               +         
Sbjct: 1041 VNQGALRGTAVHRAMECLDFKSLCDIDTKDHVAVSAFVKKSMDEMLKKGLITDDMYRLTR 1100

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
               I + + + +       D   ++          + +++ G ID   +    I + +YK
Sbjct: 1101 PKLIEQFISSDVAARMAQADKRGDLYKEKPFVMDYEGVLVQGIIDVFWLENDKIVLLDYK 1160

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYP--NKSLVC--LLIY-VSEPKVFII 935
            T        + +   +  QL +Y   L   +    KS+     LIY     +  +I
Sbjct: 1161 TDRVNAA--KELIDRYSTQLKLYADALGRIFSTDGKSIQADERLIYSFRLQQTIVI 1214


>gi|299822108|ref|ZP_07053994.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601]
 gi|299815637|gb|EFI82875.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601]
          Length = 1240

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 170/1036 (16%), Positives = 329/1036 (31%), Gaps = 133/1036 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQ--TQCIEERFSL 68
            I  D+       + ++   +  + E G P      I  +   L+Q         E +   
Sbjct: 226  IEADIRIHLEQALEELRTALKFAEEPGGPDVYLPLIENEKLQLEQLLDDYPLDWEAKKEA 285

Query: 69   LSSFFLTQKFTPQKNI--------ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
            +SS    +  T +            T++    +    + + +   +        +  KM 
Sbjct: 286  ISSVKFGRLPTIKNKENYDESLIEQTKQARDGAKKQLKAITEEWFQRDAGNYLADLAKMK 345

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                    L +   A +   K++  VLDF DL      +L ++        + I  +   
Sbjct: 346  PDIELLTELVEEFAADFLAEKQRRGVLDFNDLEHLALAILGEKTETTSYEPSEIALEYRH 405

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +   +LIDE QDT+++Q  ++  LT               LF VGD KQSIY F  AEP 
Sbjct: 406  KFKEVLIDEYQDTNMVQETILSLLTTPSEA-------AGNLFMVGDVKQSIYRFRLAEPT 458

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTT 293
              L + +  +    N G     I+L  +FRS  ++LT  + +F    + Q   +  D   
Sbjct: 459  LFLDKYKRYRVDGENTGI---RIDLSKNFRSRQNVLTTTNFIFKQLMDTQIAEIDYDEAA 515

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             +   ++        Q    +V     +   ++       DS  +       A  IA  I
Sbjct: 516  ELVLGAAFPETEERYQPEIALVDMKQEERESEE------TDSPQELQKNQAEAMLIARKI 569

Query: 354  SNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              MI       + K    R IQ +DI++L R       I    +     + I    N   
Sbjct: 570  KKMITEKFQIYDKKMQQYRPIQYRDIVLLSRAMTSATDIEEAMKA----HDIPFYANSNT 625

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVY 467
               +   I+ ++A+ + I +   D+    +L+SP+   SE+ + +I   + +    + + 
Sbjct: 626  GYFEATEIRIMLAVLKVIDNPYQDIPLAAVLRSPILGVSEEILGQIRAAKPKGYFYDALL 685

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVI 526
             Y Q   +    +    +K +     +A   S       I               G +  
Sbjct: 686  LYQQTTISPEADRIDRFLKQLELWRDLANRESLPKLIAQIYEETHYYDFVGGLPGGKQRQ 745

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581
              L    + + + E+ +Y  L   I  +E+           +      + VR+MT+H +K
Sbjct: 746  ANLRALYDRSSQYEKTAYRGLFRFIRFIERMRVRGDDMGTAKTLGEKEDVVRMMTIHASK 805

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVV L  T  +        K  +               +      +   + +   +
Sbjct: 806  GLEFPVVILAGTSRRFNMRDIYSKYLLDKEFGFSARYNDVDKRIVYPTIMQQAIKQKKYR 865

Query: 642  STQEEYNRLLYVGMTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             T  E  R+LYV +TRA  +LII         +  K + Q +    +  +    +    +
Sbjct: 866  ETIAEEMRVLYVALTRAEQKLIITGTVADWEKTKTKWATQSSHTGWILPAGVRLQGKTYL 925

Query: 699  KL-------------------TNSINKDEWIAYEWSTHHPENTPLEREETIK-------- 731
            +                      ++  D  I  E         P E + +          
Sbjct: 926  EWIGSAFARHPEFAKLLDAGQVAALPIDMPIGLEIVASEQLTNPAEAKTSKPVYLDNIQA 985

Query: 732  ------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG------------------- 766
                  +  +++ I   L     N +        S  + K                    
Sbjct: 986  GKTVPIESPEKESINSYLEFIYPNQVETQIRAKQSVTEIKRQFSVQDSWSDTKIVEGIQK 1045

Query: 767  ---KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK-LWPAKEYK 822
                              +G  +H ++Q +    E   K          AK +   ++ +
Sbjct: 1046 VSLDRPKFLQRKGLSATEKGTAMHTVMQSLPLSHEPDDKELTDFLEELVAKEILSPEQKE 1105

Query: 823  NL-LLSITRLLENPMMTTAMS--CDSYSEVSVSGKINC--------PKKDIIISGRIDQI 871
            ++    I       +             E+  S  +           ++ ++I G ID +
Sbjct: 1106 SITYSEIQAFFRTKLGRLINENLQQVEREIPFSYHLPASVIYPEAETEERVLIQGVIDCM 1165

Query: 872  SISQQNIFIFEYKTHHH----VPQEIEH---IPYTHIAQLSIYEKILKDSYPNKSLV-CL 923
                  + + +YKT           +E    +   +  Q+ +Y+K ++     K +    
Sbjct: 1166 LEEADGVTLIDYKTDRIGSHFPNGWLEAEPVLKKRYEVQMHLYQKAVEAI-TKKPVKHIY 1224

Query: 924  LIYVSEPKVFIIPQNK 939
            L +     V  +   +
Sbjct: 1225 LYFFDGAHVCQLETEE 1240


>gi|291549061|emb|CBL25323.1| recombination helicase AddA, Firmicutes type [Ruminococcus torques
            L2-14]
          Length = 1239

 Score =  375 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 156/1060 (14%), Positives = 323/1060 (30%), Gaps = 171/1060 (16%)

Query: 7    LSLNESYEL-IYKDLWPLPYFQVSDINKYVSLSME------------TGNPTILKKAQTL 53
            +   +  E  + ++        ++D+  +V  ++E                + L + + L
Sbjct: 201  IDPEKMEEADVVQEAKARVRQNLTDVKGFVQQAIEVCELPAGPYMYGEMLDSDLVQIEQL 260

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ----EINKKSPDLKEKLKK--SQDEF 107
            ++A      E+  S  +   L+ K  P  +   +     + K++  L E LK        
Sbjct: 261  EKAETFCQQEQIVSNFTWKRLSGKKDPTVDPELKEKAQGLRKQAKKLIEDLKANYFYAPV 320

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--- 164
             +        +        + L +     + E K++  +LDF D+      +L +     
Sbjct: 321  DEWIRDMQEAQTA--MKMLVLLVQAFAEAFSEKKRQRNLLDFSDMEQFALRILTEEKEGK 378

Query: 165  -VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
             V + +  +  +    ++IDE QD++L+Q  ++ S++ +             LF VGD K
Sbjct: 379  LVPSAVAQEYQERFEEVMIDEYQDSNLVQETILASVSRESA-------GQNNLFMVGDVK 431

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            QSIY F  + P+  + +      +          I+L  +FRS  ++L   + +F     
Sbjct: 432  QSIYRFRLSRPELFMGKYNSYSTQ----ESSRQRIDLDRNFRSRGEVLDSTNYIFRKLMR 487

Query: 284  --AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                 +  D    +   +S                  ++    Q E        L    +
Sbjct: 488  KEFGEIIYDDKAALHLGASFPELP------------DENVFTDQTELLLYNQTGLRSSEA 535

Query: 342  ASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                AR IA  +  ++ T  +     G+ R +  +D+++L R          +   +  +
Sbjct: 536  REEEARMIAQRMKELLNTGVVLDKETGEYRPVHYRDMVILTRS---LQGWAEVFASILAE 592

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              I      R    +   +  L+   + + +   DL    +L SP    +  ++  I   
Sbjct: 593  EGIPAYSVSREGYFETYEVSVLLDYLKVLDNARQDLPLTAVLTSPFAGLTAAELSVIRLA 652

Query: 460  RHETETVYEY---------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                                      +K A     K +   + +     I  + + HD  
Sbjct: 653  YPNQLFYEAVEGFCSLSSEEIPETVDKKQAIQVQEKLRKFFEVLDHFREILPYTAIHDLL 712

Query: 505  TLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YP 558
              I+              G +    ++  +      E  SY  L   +  +EQ       
Sbjct: 713  AEIIDKTGYGLFISAMPGGAQRQANVEMLVEKARAFEGTSYKGLFNFVRYIEQLKKYDVD 772

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                       + VRIM++H +KGLE P+VF+  TG Q  +      + I P       +
Sbjct: 773  YGEASIIDEQDDTVRIMSIHKSKGLEFPIVFVAGTGKQFNTQDLKGSIVIHPRNGVGIDV 832

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK---- 674
                 ++K+   +   + +  K     E  R+LYV MTRA ++LI+        +     
Sbjct: 833  VDLEMRTKAPTFLKKMIQEKTKLENLAEELRVLYVAMTRAKEKLILTGSLKMGEDGLEPY 892

Query: 675  ------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE-------------------W 709
                  + +  + Y +   + + D  +  +     + +++                    
Sbjct: 893  VNHMTDRESSLSLYQLEGANRYLDWILPALLQEEDLKREDGLCGILKTESEEVQQLPIKV 952

Query: 710  IAYEWSTHHPENTPLEREETIKQ---------------LMDEQKIPKKLFSPIKNDINEP 754
              ++            + E I +                 ++ +       P K +    
Sbjct: 953  RIFDAGEMDFTEDAQRQAEVIAREVLEHWDTTKVYLPGAEEKLEQQMNFLYPYKEEGKMK 1012

Query: 755  YILNPSTIDTKGKTNLESLL--------------------SDNQTFNRGLIIHKLLQVIF 794
                 S +  +     E+                            +RG   HK L++  
Sbjct: 1013 LKFTVSELKKRESLQEEAGEELIQEPEIVPLLPHFMEEQKEGLTGASRGSAYHKFLELHD 1072

Query: 795  TLPEHKRKNFITSYCTK-NAKLWPAKEYKNLL-LSITRLLENPMMTTAMSC----DSYSE 848
               E+  +           A     +    +    I   L +                 E
Sbjct: 1073 FSKEYTEELLKEEIELFYQAGRLSKEMVDCIRTKDILAFLNSESGRRMTQAAGNGKLRKE 1132

Query: 849  VSVSGKINC----------------------PKKDIIISGRIDQISISQQNIFIFEYKTH 886
                  +                         ++ I+I G ID     +  I + +YKT 
Sbjct: 1133 QPFVLGVPASEIYPEIYQDIQKRSQEADENRKEETILIQGIIDVWFEEEDGIVLLDYKTD 1192

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                +    +   + AQL  Y + L+     K +   +IY
Sbjct: 1193 RV--RNASQLKELYHAQLDYYAQALEQLL-EKPVKEKIIY 1229


>gi|78043588|ref|YP_360999.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901]
 gi|123575608|sp|Q3AA35|ADDA_CARHZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|77995703|gb|ABB14602.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1167

 Score =  375 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 145/904 (16%), Positives = 318/904 (35%), Gaps = 85/904 (9%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++  K+ +  E +KK    +     R     +       + L +  +  Y+E K+K+  
Sbjct: 294  KDLRDKAKEQFETIKKRYFSWEAGNFREELRTLTSYLDPLVKLVREFSRKYQEEKRKHGF 353

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
             DF DL     D+LK     + +  ++ ++   IL+DE QD + +Q E++  ++ D    
Sbjct: 354  ADFSDLEHWALDILK-----SGVYRELREKYVEILVDEYQDINGLQEEILTYVSRD---- 404

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                   + LF VGD KQSIY F  A P+  L++                 IEL L+FRS
Sbjct: 405  ------GQNLFMVGDVKQSIYRFRWARPEIFLKKYEDF--------TDEKKIELSLNFRS 450

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              +I+  V+ +F      +            +             E  + +   +     
Sbjct: 451  REEIIATVNFIFKQIMKKRVAELSYDEKAFLKKGADYLPNANCFAELHLIEGKPE----- 505

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
            E   S  +     ++    AR +A  I  +        + + +  +      +V   +  
Sbjct: 506  EDINSNGEPEEDLTAVHREARLVAAKILKLKEEGFKVFDRETKEFRPLQYRDIVILSRSL 565

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
               + + +       I V         +   I  + +  + I +   D+    +L SP+ 
Sbjct: 566  SNSSNIWQEELTRAGIPVYVEGAGSFLNSKEILLMTSFLKVIDNPCQDVPLAAVLCSPVA 625

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDF 503
              + ++++++  +  E   +Y+ ++  +        K Q  ++ + E   +++  S  + 
Sbjct: 626  GLTYEELWQVRKEYPEGL-LYDALKNKSLGKDELSVKSQKFLELLVEFQKLSRQISLAEL 684

Query: 504  FTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I       + F +  G E     L    +  +   + +   +   ++ L Q   +  
Sbjct: 685  VNEIYRKTNLPEIFGAYPGGEVRQANLKLLHDLAVDFAEINGGGIYNFLTFLSQAAESED 744

Query: 563  RAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
             + +       + VR+M+VH +KGLE PVVF+V  G + F   +   + +   L   P  
Sbjct: 745  FSPAKLIGEADDVVRVMSVHKSKGLEFPVVFVVGLGKR-FKFDYSNTVFLHSDLGFGPKF 803

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                 + +  +     L + +++ T  E  R+LYV +TRA ++LI+        +K +  
Sbjct: 804  FDPEKRIRRHSIASQILSERMRRETLAEEMRILYVALTRAREKLILVGTVKNLAKKMAGW 863

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
            ++  + + D+  + +  +     + I    +          +     ++E I+    E  
Sbjct: 864  QSQTEALKDTLSDGQIARAGNFLDWIGPVVFREGSDLPDCLKVEVHPQQEKIEGEQWELP 923

Query: 739  IPKK------------------------LFSPIKNDINEPYILNPSTIDT---------- 764
               +                           P       P  ++ S +            
Sbjct: 924  EVLRVKLLTKTPFTEETDYTGQFRAGLEFNYPGLKIAKLPAKMSVSDLKEVFSTDDVISL 983

Query: 765  -KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                      +        G++ H+ L+ I    +           T  A+     E + 
Sbjct: 984  EDEDEVFLPGVYFEDGAMLGIVYHEFLRRIDFQGDLSASGLKAQGETLVAEGVLPPESRE 1043

Query: 824  LLL--SITRLLENPMMTTAMSCDS-YSEVSVSGKINCPK---------KDIIISGRIDQI 871
            +L    I R+   P+    +     Y E   +  +   +         + I++ G ID +
Sbjct: 1044 MLDFTKIARIFATPLGQRILRAREIYPEFPFTLGVKAGEIYPEATGFSEKILVRGVIDLL 1103

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
            ++ +   FI ++KT       +      +  QL++Y + +++    K     L +++  K
Sbjct: 1104 ALEEDGFFIVDWKTDRVTGDILNERLKEYAGQLNLYARAVEEITGKKVKEKYLYFINLEK 1163

Query: 932  VFII 935
               +
Sbjct: 1164 EVRV 1167


>gi|323341189|ref|ZP_08081436.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644]
 gi|323091383|gb|EFZ34008.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644]
          Length = 1244

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 158/1026 (15%), Positives = 319/1026 (31%), Gaps = 137/1026 (13%)

Query: 25   YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
                S   K ++L  + G       A+ L+  +    +++ F+ +S            ++
Sbjct: 241  EQDESFFAKQIALFEDEGG-RYENYAKMLEDGADYATLQKTFAEMSYARFPSTKRTDDSL 299

Query: 85   IT------QEINKKSPDLK-EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
            +T      + I  ++  +  EK+                 + ++       +     A Y
Sbjct: 300  LTETKANVKLIRDEAKKIFTEKIVPEYFAVSSTDLEQALKQAYRLVKKLSEVVLKFAAAY 359

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            +  K+   VL+F DL   T  +L+K D    IR  +++    I++DE QDT+ +Q  ++ 
Sbjct: 360  QTEKRSRRVLEFSDLEHYTLSILQKNDD---IRQDLEERYAEIMVDEYQDTNQLQETILT 416

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            ++            SP  +F VGD KQSIY F  A+P   L + R               
Sbjct: 417  TIA---------RKSPGNMFMVGDVKQSIYGFRLADPGLFLEKYRRYAND----DSDGQR 463

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            I L  +FRS  ++ ++ + +FS   + +    D     +               E ++  
Sbjct: 464  IILAENFRSVKNVASITNLIFSQIMSREVGEMDYDDNAQLVYGSSDYPEKQPTAEILLYF 523

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRI-----------AYTISNMIGTDTIFSN- 365
                   ++ +    +D   ++  +      I           A  I  ++ +     + 
Sbjct: 524  DKRNETAEKTTGKMRWDMTSEDHESMDADFTIESAAQGQMLATAEKIKQLVDSGFEIYDR 583

Query: 366  --GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
               K R I   DI VL     +      +         I               ++ ++A
Sbjct: 584  KQKKMRKISYGDIAVLSGTHGN----HLILSEEFKRLGIPYKVQKSENYFQTTELRIMLA 639

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------VYEYIQKFANCG 477
            L   I +   D+  V +L+SP+   +E+++  +       +        YE         
Sbjct: 640  LLNVIDNPRQDIPLVAVLRSPIVGLNENELALLRINDRSGDYYQALLKFYEESPGQNQEL 699

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFT 536
              K +  ++ +     +A+          I       +       G++    L       
Sbjct: 700  HDKVKKFMEMLERFRTLARQNELATLIWKIYDETHFLEYVSGMPGGSQRAANLHALYERA 759

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVD 592
               E+ S+  L + I  + +     +        A+ + V +MT+H +KGLE PVVFLVD
Sbjct: 760  AAYEKTSFKGLFQFIRFINKMQDQNEDLASALNEASDDVVSVMTIHGSKGLEFPVVFLVD 819

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  +     K  +               + ++   + S   +   +    E  RLLY
Sbjct: 820  ATKRFNTDSLKGKYLLNEKDGVSITCLNRKTRVETVTPMQSYAKEKAARKLCAEQMRLLY 879

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQR-------------------TWYDMVYDSFHNDE 693
            V +TRA  +L I       ++  S  +                    + D +  + + + 
Sbjct: 880  VALTRAEQKLFIVAGYKDEDDALSKWKQAKKSEDLLLSADVRENAVCFMDWIGAALYRER 939

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
               K        +      ++S  +        E +         + K L    K +++ 
Sbjct: 940  NFCKRFDCADDVRPCHYLDKFSAEYEFEKISFDELSKNADNQPLDLRKWLKDQAKEELDA 999

Query: 754  P------------------------------------------YILNPSTIDTKGKTNLE 771
                                                         L+PS  + +      
Sbjct: 1000 DDADFINKVLTYRYEHEGLVKTAAYQSVSEIKSAFADPDEKVMSKLDPSENEEEKANRFV 1059

Query: 772  SLLSDNQ---------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
            S +   +             G  +H +++ +    +    +               +E  
Sbjct: 1060 SKMELPKFMVHEEKISGAAIGSAVHLVMEKLDLTKKPSESSVKEKISKLVEDGILNEEVA 1119

Query: 823  NLLL--SITRLLENPMMTTAMSCD--SYSEVSVSGKINC--------PKKDIIISGRIDQ 870
              +    I R  E  +  T +        EV  S  I              +++ G ID 
Sbjct: 1120 KRIRISDICRFFETDLGKTILEKHEFVKREVPFSLLIPANEIFVGLSESDPVLVHGIIDG 1179

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSE 929
                 + + +F+YKT H   + +  +   +  Q+ +Y   LK    NK +    L     
Sbjct: 1180 YVDDGKKVILFDYKTDHADEENVSEVKKRYAGQIELYSMALKSIL-NKPVDEKYLYLTQL 1238

Query: 930  PKVFII 935
             K   +
Sbjct: 1239 GKAVDL 1244


>gi|299535964|ref|ZP_07049283.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1]
 gi|298728569|gb|EFI69125.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1]
          Length = 1239

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/1020 (15%), Positives = 333/1020 (32%), Gaps = 119/1020 (11%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
             + +    +   +   +                   Q   + SQ+   +E F   ++   
Sbjct: 236  SLEEAFMLISEMRTITLLPDGPAPYAETAEVDFAMIQEGIRISQSGTWQELFDYFATVKW 295

Query: 75   -TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-------AS 126
             T K   +  ++  E+ + +   +E  KK  ++  +        ++ +            
Sbjct: 296  STLKRVSKDALVNVELQELAKKKREAAKKMMNKIKETYFIRTPARLLEEIRLMAPTITTL 355

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA----WIRYKIDQEINHILI 182
            + L    +  +  AK +  ++DF DL      +L      A     +   + +    +L+
Sbjct: 356  VELTTTFSEQFRLAKLERGIIDFSDLEHYALQILTVEIDGALHPSPVALDMKKRFKEVLV 415

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT+++Q  +++ +       K        LF VGD KQSIY F  AEPK      R
Sbjct: 416  DEYQDTNMLQETILQLV-------KTGEEQDGNLFMVGDVKQSIYRFRLAEPKL---FMR 465

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSS 300
               +   +       I+L  +FRS  ++L   + VF+     +   +S D   +++  + 
Sbjct: 466  KYSEYLESPDATGMRIDLNANFRSRKEVLNATNYVFAQIMGERVGEISYDDNASLKPAAP 525

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
               +   V+L      Q +      +E        L +   +   AR I   I  M+   
Sbjct: 526  YDEKEIPVELVVLHPPQEEETTEELEELSNEAT-ELEELKKSQYEARFIIDRIRQMMEDG 584

Query: 361  TIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
            T   +     +R ++  DI++L+R    +               I +         D L 
Sbjct: 585  TTVYDTKTKTERPLKYSDIVILMRSMTWSTD----LVEEFKLAGIPLYAESSKGYFDALE 640

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF---- 473
            +  ++ + + + +   D+    +L++P    +E+++ KI     +    Y+ +++F    
Sbjct: 641  VMIMLNVLKVVDNPYQDIPLASVLRAPFVGLTENELAKIRLA-DQKVPFYDALRQFIRSE 699

Query: 474  ----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDV 528
                      K Q  +        +A+  S  D    I       +       G +    
Sbjct: 700  GHGVQTTTFEKLQRFMLAFENWRDLARRGSLSDLIWKIYLDTHYYEMVGAMPNGKQRQAN 759

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGL 583
            L    +  L  E+ ++  L   +  +++           ++     + VR++T+H++KGL
Sbjct: 760  LRVLHDRALMYEKTAFRGLFRFLRFIDRMRTRGDDLGTAKSIGEKDDVVRLVTIHSSKGL 819

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E PVVF+   G         +                   +    +     L +  +   
Sbjct: 820  EYPVVFVAGMGRPFNKMDFHQPYLFDQDFGLAVKAIDPENRITYTSLPFLALKEKKELEM 879

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEK--------------------KSNQRTWYD 683
            + E  R+LYV MTRA ++LI+        +                     ++   ++ D
Sbjct: 880  RAEEMRVLYVAMTRAKERLILVGSVKNWEKTRDNWQDAQSLPMNAPLQEYLRARANSYLD 939

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE--------------- 728
             V  +         +  T+    D+   +       ++   E EE               
Sbjct: 940  WVGPAVARHADFATVASTSYKELDDQSHWWVQAIETKHYSYEIEEAMGDEVQQVLAMQED 999

Query: 729  --------------------TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                                T K+        K+L +  + +  E Y  +P    T    
Sbjct: 1000 EDLLAEITTRFQAQYVYQKSTRKRSKTSVSEIKRLENLQRQEEPEFYFASPIKQKTSSIA 1059

Query: 769  NLESLLSDN--QTFNRGLIIHKLLQVIFTLPEHKR---KNFITSYCTKNAKLWPAKEYKN 823
               + L +    +   G  +H ++Q +           ++F+     +   L    E K 
Sbjct: 1060 PRPAFLQEQQLTSAEIGTAVHTVMQHVPQYGFSHINAVRDFVEDLVARQ--LLTEAEGKV 1117

Query: 824  LLLS-ITRLLENPMMTTAM-SCDSYSEVSVSG-KINCPKKDIIISGRIDQISISQ-QNIF 879
            +  + I    E  +      +     E+  +  +I+      I+ G ID +   +  N  
Sbjct: 1118 VPQAKIYHFFETEIGQRFQRARQIRREMPFTISRIDEDGDAQIVQGIIDCLFEDEYGNWV 1177

Query: 880  IFEYKTHHH------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
            + +YKT          P   + I   +  QL +Y + ++     K    +L      +  
Sbjct: 1178 LLDYKTDRIQSHFAQEPALSKEILGRYAVQLRVYSEAIESILHIKVSDKVLFLFDNEQTI 1237


>gi|238923931|ref|YP_002937447.1| DNA helicase II [Eubacterium rectale ATCC 33656]
 gi|238875606|gb|ACR75313.1| DNA helicase II [Eubacterium rectale ATCC 33656]
          Length = 1220

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/1006 (13%), Positives = 301/1006 (29%), Gaps = 125/1006 (12%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +         P        +++ ++L         +     +Q+               +
Sbjct: 233  TMAKDLASATPGLEKYALTLSEDIALF---DGMADVTGYVGMQEFLNKISFGR-----IA 284

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                     +K    + +   +    + +K+               +        + L+ 
Sbjct: 285  AIRKFDGDEKKKERVKSMRDAAKKKVDGIKQKYFGMSIELMYEQLERQRPFVKELIRLSL 344

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--VSAWIRYKIDQEINHILIDEVQDTS 189
                  E  K K  V DF D+      +L             +  +    I+IDE QD++
Sbjct: 345  EFYDAMEAVKIKKRVFDFSDIEHFALRILVDEQTLEPTETAREFSKHFEEIMIDEYQDSN 404

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +Q +++ +++ +       H     +F VGD KQSIY F  A P+  + +         
Sbjct: 405  QVQEDILTAISRE-------HQGVGNMFMVGDVKQSIYRFRMARPELFMEKYNTYTSD-- 455

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGT 307
                    I+L  +FRS  ++L   + +F     A    +  D    +   +S   +   
Sbjct: 456  --DSAHQRIDLHKNFRSRNEVLDFTNDIFYKIMAADLGNVQYDDDAALYPGASYPKETMR 513

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN-- 365
             +L        D     + E                I A  IA  I +++    +     
Sbjct: 514  PELLLVDYKDEDLSEIIEDED----------GDKVQIEALLIANRIRSLMENGMVTDKKT 563

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            G+ R +Q +DI++L R              +  D  I               I+ ++++ 
Sbjct: 564  GQLRAVQYRDIVILSRS---VATWGNTVAAVLKDCDIPAHVESNTGYFSSYEIQVILSML 620

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---ISKFQ 482
            R + +   D+    +L SP+    ++++ +I +           +   A        K +
Sbjct: 621  RILDNPLQDIPMAAVLASPIVGMDDEELAQIRSAFKGVSFAQAALSAMAGEDGYEDEKLK 680

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                    L         H+   ++L      R       G      +D  +      E+
Sbjct: 681  AFALVFERLRGAVADTPIHELLYMMLDETGFYRYASAMPAGKRRRQNIDMLIEMAAAYEK 740

Query: 542  NSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             SY  L   +  ++     +           N + VRIMT+H +KGLE PVVF+   G  
Sbjct: 741  TSYKGLFHFVRYIDIQQKYEIDYGEADTAGENDDVVRIMTIHKSKGLEFPVVFVSGLGKS 800

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              +      + I   L          P++K  + I +++   +K+    E  R+LYV +T
Sbjct: 801  FNTQDTKSDLVIHEKLGLGLVEKTKSPRTKRPSLIRNEIESRIKRENLGEELRVLYVALT 860

Query: 657  RASDQLIICKHSNTSNEK------------------KSNQRTWYDMVYDSFHNDERVKKI 698
            RA +++I+    + + +                   +     + D +  +  +      +
Sbjct: 861  RAKEKIILTGGLSNAQKSFEKYRGNVNANQPISFGQREGAGCYLDWIIPAMLSYPDKYTV 920

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--LFSPIKNDINEPYI 756
               ++       A + + +      L    +       +++ ++        +DI +   
Sbjct: 921  STVDATEFAARTAMDMAANDISKAQLIGHISAADETKAKELAEEFDFEYVYASDITKKSK 980

Query: 757  LNPSTIDTKGKTNLESLLSDNQ-------------------------------------- 778
             + S +                                                      
Sbjct: 981  YSVSELKHDSMVEKYDSTEREAERPKFLLEEKETYVPDFARDDEAGGASNESKEPKNAAG 1040

Query: 779  ---TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL---------- 825
                  RG  +H++++ +                +   K    +  +  L          
Sbjct: 1041 VNQGALRGTAVHRVMECLDFKSLCDIDTKDHVAVSAFVKKSMDEMLEKRLITDDMYRLTR 1100

Query: 826  -LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
               I + + + +       D   ++          + +++ G ID   +    I + +YK
Sbjct: 1101 PKLIEQFISSDVAARMAQADKRGDLYKEKPFVMDYEGVLVQGIIDVFWLENDKIVLLDYK 1160

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYP--NKSLVC--LLIY 926
            T        + +   +  QL +Y   L   +    KS+     LIY
Sbjct: 1161 TDRVNAA--KELIDRYSTQLKLYADALGRIFSTDGKSIQADERLIY 1204


>gi|310657539|ref|YP_003935260.1| ATP-dependent nuclease subunit a [Clostridium sticklandii DSM 519]
 gi|308824317|emb|CBH20355.1| ATP-dependent nuclease, subunit A [Clostridium sticklandii]
          Length = 1184

 Score =  373 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/943 (15%), Positives = 308/943 (32%), Gaps = 110/943 (11%)

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------KLKKSQDEFIKI 110
                +  + +            K  +   +  +   +++          ++KS     + 
Sbjct: 267  ADFIQAIAEVKHSRFAAISKKMKEELDVALVDEVKAIRDTDIKASGIKAIQKSIKNISQG 326

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
                +   ++    A        +  Y E K  N VLDF DL      LL+       +R
Sbjct: 327  FQLEDIKNLYPLMKALYKTVARYDELYSEIKLANSVLDFSDLEHYALRLLENE----AVR 382

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              +  +  +I  DE QD++++Q  +I ++  +             LF VGD KQSIY F 
Sbjct: 383  EDLRAKYTYIFFDEYQDSNIVQETIISAIKRED-----------NLFLVGDVKQSIYRFR 431

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLS 288
             A+P             A    +    I+L  +FRS   IL  ++ +FS    E+   ++
Sbjct: 432  LADPTL---FIDKYHSYAKADDRPNKRIDLSNNFRSRPAILEFINDIFSAIMNEDLGEVA 488

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             D +  +        +   V+L      + +                     +  + A  
Sbjct: 489  YDDSAKLIPGMDFPVEKNKVELVVLENHKLEED---------DELAEDADMDNPELEAMY 539

Query: 349  IAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            ++  I  ++G +       + + I  +DI++L+R  K +         +  D +I    +
Sbjct: 540  VSSRIKELLGKEHYNPKAKEFQKITYRDIVILMRSPKSSI---AAFEKVLKDDRIPCYVD 596

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---E 464
                  D L +K  + L + I + E D + + ++ S +  FS D+I +I     +    +
Sbjct: 597  YSASYYDVLEVKLFIDLLKIIDNIEQDEALLAVMNSSIGGFSLDEIIEIRVAYKKGAIYQ 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
             +  Y+    N    K    +  I       +     +F   ++          +  G +
Sbjct: 657  ALLSYMADNDNELSIKINTFLDRIKTYRFKEKLQRLDEFLWYLMNDTGYYSDLAAMPGGQ 716

Query: 525  -VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578
               + L   L+     + N+ + L   +  +++           +A S + + VRIM++H
Sbjct: 717  MRQENLKALLDKASEFQSNTTNGLFNFLHYIDKLLKDKGDTQEAKALSESEDRVRIMSIH 776

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE PVVF+             + + +  SL   P            +   + +   
Sbjct: 777  KSKGLEFPVVFVCGLSKGFNKADFKQDIMLHNSLGIGPKYVDLDKNVYRESLPKTAIKIQ 836

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE---KKSNQRTWYDMVYDSFHNDERV 695
              K    E  R+LYV +TRA D LI+        +   + S   +   ++  S +    +
Sbjct: 837  SNKEMLSEELRILYVALTRAVDTLIMVGSVKDIEKLATRASKSTSTSYLLSQSNYLSWML 896

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPEN----------TPLEREETIKQLMDEQKIPKKLFS 745
              +      +     A         +             +  +  ++  ++    + +  
Sbjct: 897  IALYKHRDASALRDYAVREVIEDDTSYKSSFKLSLVAKYDLLKLSQREREDIDNMEAILR 956

Query: 746  PIKNDINEPYI-------------------------------LNPSTIDTKGK------- 767
              K D +E                                  L  S +D           
Sbjct: 957  DYKADSSETLNPEVISVINSRFSYEYPYKEQTMQVSKTSATMLAKSVLDASKISVVIQSM 1016

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA-KLWPAKEYKNLLL 826
                  +       RG ++H  +Q I                  +  +L  ++E  +L  
Sbjct: 1017 PRFMQKVKTFSASQRGTLMHFAMQNINLNQVASPSEIEDQLDMMHVNELLTSEERASLDS 1076

Query: 827  SIT-RLLENPMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
             +      + +      S +   E S        K ++++SG ID          + +YK
Sbjct: 1077 EMLYEFFCSELGKRMRRSKNVIRENSFM----LKKDEVLVSGVIDSYFEEDGEWVLVDYK 1132

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            T +      +     +  QL +Y++ L+    +K +    IY+
Sbjct: 1133 TDYLGTDSKKDKAEMYRPQLELYKEALES-STDKPVKEAYIYL 1174


>gi|307709426|ref|ZP_07645883.1| recombination helicase AddA [Streptococcus mitis SK564]
 gi|307619740|gb|EFN98859.1| recombination helicase AddA [Streptococcus mitis SK564]
          Length = 1216

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1031 (15%), Positives = 337/1031 (32%), Gaps = 141/1031 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQ 60
            K  F     +  E I + LW L  F    ++      +       +      +   +Q  
Sbjct: 228  KADFSSEKEKLTEQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQES 287

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNT 116
              +   ++L+      K    +++           L +   + +     +  ++ D+   
Sbjct: 288  DSQAYQAVLARVVAISKEKNGRSLTNASRKADLKPLADAYNEERKTQFAKLGQLADQITI 347

Query: 117  YKMFKS-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                +     +  LAK            Y + K++    +F D+   T ++L+       
Sbjct: 348  LDYQERYHGDTWELAKTFQAFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---Q 404

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +R       + +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY 
Sbjct: 405  VREAYHDRFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYR 453

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F  A+P+    + +   +      Q+  +I L  +FRS++++L+  + VF    + +   
Sbjct: 454  FRQADPQIFNEKFQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGE 509

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             +     +   +            + +         ++E           E+  +   R 
Sbjct: 510  INYDNMHQLVFANSKLTPNPDNKAEFLLYDKDDTGEEEEG--------QAETKLTGEMRL 561

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +   I  +            + +  K+I +L   R              ++Y I V  + 
Sbjct: 562  VIKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDG 608

Query: 409  RFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                    L ++ ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +   
Sbjct: 609  EQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHE 668

Query: 468  EYIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             + +K  N                  K +  +  +      A+  S +D    I   +  
Sbjct: 669  NFYEKLVNAQKLVSSQKGLIQTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFY 728

Query: 514  RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSAN 568
                 +   G      L        + E++++  L   I  ++Q           A +  
Sbjct: 729  YDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAIAPP 788

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             + V +MT+H +KGLE P VF+++          + ++ +             +      
Sbjct: 789  KDAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEIILSRQNGLGVKYIAKMDTGAVE 848

Query: 629  NNI------------VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK- 675
            ++                  + L+ ++  E  RLLYV MTRA  +L +    +    +  
Sbjct: 849  DHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESK 908

Query: 676  ------------------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                               N + W   +   F  D                    E   +
Sbjct: 909  EYPAAKNGKLNSNTRLQARNFQDWIWAINKVFAKDNLNFSYSFVGEDQLTREAIGELENN 968

Query: 718  HP----ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----- 768
             P          + ETIK+ ++  K  +   +  +  I  P +  PS I    +      
Sbjct: 969  GPLQDNSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDLE 1028

Query: 769  -------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
                                  S          G   H+L+Q +      +R    +   
Sbjct: 1029 GVEIAGQGQSVDKKISFDLPDFSSKEKMTGAEIGSATHELMQRMD---LSQRPTLASLTE 1085

Query: 810  TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIII 864
            T             + L  I    +  +    ++     Y E   S   +    ++D ++
Sbjct: 1086 TLKQVQTSLAVKDKINLSKILAFFDTALGQEILANTNHLYREQPFSMLKRDQKSQEDFVV 1145

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
             G +D   + +  I +F+YKT  +   E   +   + AQL++Y + L  +Y  +++   L
Sbjct: 1146 RGILDGYLLYEDKIVLFDYKTDRY--DEPSQLINRYRAQLALYGEALSRAYSIENIEKYL 1203

Query: 925  IYVSEPKVFII 935
            I + + +V ++
Sbjct: 1204 ILLGKDEVQVV 1214


>gi|225861093|ref|YP_002742602.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230417|ref|ZP_06964098.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada
            MDR_19F]
 gi|298255440|ref|ZP_06979026.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada
            MDR_19A]
 gi|298502847|ref|YP_003724787.1| ATP-dependent deoxyribonuclease subunit A [Streptococcus pneumoniae
            TCH8431/19A]
 gi|225727192|gb|ACO23043.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238442|gb|ADI69573.1| ATP-dependent deoxyribonuclease, subunit A [Streptococcus pneumoniae
            TCH8431/19A]
          Length = 1216

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVTFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|168492513|ref|ZP_02716656.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04]
 gi|183573318|gb|EDT93846.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04]
          Length = 1216

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|323483646|ref|ZP_08089030.1| recombination helicase AddA [Clostridium symbiosum WAL-14163]
 gi|323403073|gb|EGA95387.1| recombination helicase AddA [Clostridium symbiosum WAL-14163]
          Length = 1092

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/941 (16%), Positives = 302/941 (32%), Gaps = 115/941 (12%)

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K     E  K+     EK+++        +   +     +S L  L LA+   A + E
Sbjct: 164  PDKKEAVSECRKRIKKSVEKMREQYLFESPEKTLEDMEAGKESILMLLALAEEFAARFRE 223

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAW--IRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             K++  V+DF DL     ++L +        +  ++ ++ + IL+DE QD++L+Q  +I 
Sbjct: 224  KKREKNVVDFNDLEHFALEVLTEAGTGRPGPVADELSRQFDEILVDEYQDSNLVQETLIH 283

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
             ++ +             +F VGD KQSIY F  A P+  L +        T+    +  
Sbjct: 284  CISRE-------RFGSPNVFMVGDVKQSIYKFRLARPELFLEKYNSY----TSEESLYQK 332

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            IEL  +FRS   +L  ++ +F      +   +     T +   +S     G  Q      
Sbjct: 333  IELHQNFRSRDTVLMSINDIFFRIMTKKLGNIEYTDETALHPGASFEPYEGRKQGELDTE 392

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKKRV 370
                +    + E      D +   ++  + A  IA  I  + G +             R 
Sbjct: 393  LLLINTAGSELEGL---DDDISDYTARELEAGMIAGKIRELTGEENGMAVWDKDEKCYRP 449

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
             +  DI++L+R              +     I      R    D + ++ ++ L   I +
Sbjct: 450  ARYGDIVILLRSVSGWA---ESFTEILAHQGIPAFAESRTGYFDTVEVETVLNLLAVIDN 506

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICT------QRHETETVYEYIQKFANCGI------ 478
               D+    +LK+P    ++ ++  I        ++     +Y  +  F +         
Sbjct: 507  PIQDIPLASVLKAPFCGLADRELAHITAVCKRNIEKGRDRGLYSAVMNFLSESRADSEHG 566

Query: 479  ------------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-IS 519
                               K +  +K I  L  +A +   H     I             
Sbjct: 567  PEGEKSGTDELFNDAAIAEKLEKTVKLIEGLRKMAVYLPMHSLLHRIFDLTGYYDYVSAM 626

Query: 520  RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRI 574
              G      LD  +      E  SY  +   I  +E+              +   N VRI
Sbjct: 627  PAGETRRANLDMLVEKASSYEATSYRGVFHFIKYIEKLKKYNTDFGEASTVNEQGNTVRI 686

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            M++H +KGLE P+V +   G          K+ I               + K      + 
Sbjct: 687  MSIHKSKGLEFPIVIVAGMGKMFNKQDTRGKILIDSEFGIGTDYLDSRKRLKGPTLKKNV 746

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---------------- 678
            + + ++     E  R+LYV MTRA ++LI+       + +                    
Sbjct: 747  MKRRMELEALGEELRVLYVAMTRAKEKLIMTASDKNLDGRIEKWRQISLYGGQVPYTILT 806

Query: 679  --RTWYDMVYDSFHNDERVKKIKLTNSINK--DEWIAYEWSTHHPENTPLEREETIKQLM 734
               +  D +  S         +    + ++  +E           E       + I    
Sbjct: 807  MAGSCLDWLLMSIRESGCRISVTRVKAEDQLVNEIEEQLSKKVSREELLNRDPDRIYDAA 866

Query: 735  DEQKIPKKLF--SPIKNDINEPYILNPSTIDTKGKTNL-------------ESLLSDNQT 779
              +++        P + D+     ++ S +  +G                 E        
Sbjct: 867  YRKRLETSFHFRYPYEADVALNTKMSVSELKKEGMEAEEETAFLPTLPVFMEEEEVREGG 926

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLL-LSITRLLENPM 836
             +RG   H+ ++++    +   +  +T    +         +    +    I R     +
Sbjct: 927  TSRGTAYHRAMELLPF-SQITSEEEVTRLLNQYTEEGKLAKEARDMIWPPDIYRFFTTKL 985

Query: 837  MTTAMSC----DSYSEVSVSGKINCPKKD-------IIISGRIDQISISQQNIFIFEYKT 885
                 +       Y E      I   +         ++I G ID     +  + + +YKT
Sbjct: 986  GKRMQAAAQAGKLYKEKQFVMGIPAREMGDWDSDELVLIQGIIDAWFEEEDGLILVDYKT 1045

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             +    +I  +   +  QL  YEK L      +++    IY
Sbjct: 1046 DYVNDAQI--LVKRYKTQLDYYEKALTQML-GRNVKERYIY 1083


>gi|149006188|ref|ZP_01829900.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74]
 gi|307127336|ref|YP_003879367.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B]
 gi|147761965|gb|EDK68927.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74]
 gi|306484398|gb|ADM91267.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B]
 gi|332075086|gb|EGI85557.1| recombination helicase AddA [Streptococcus pneumoniae GA17545]
          Length = 1216

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|168483212|ref|ZP_02708164.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00]
 gi|168493077|ref|ZP_02717220.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06]
 gi|172043538|gb|EDT51584.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00]
 gi|183576624|gb|EDT97152.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06]
          Length = 1216

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQITILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|297584273|ref|YP_003700053.1| recombination helicase AddA [Bacillus selenitireducens MLS10]
 gi|297142730|gb|ADH99487.1| recombination helicase AddA [Bacillus selenitireducens MLS10]
          Length = 1244

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1001 (16%), Positives = 319/1001 (31%), Gaps = 130/1001 (12%)

Query: 51   QTLQQASQTQCIEERFSLLSSF-FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---- 105
               +   +T         LSS  F   K   +K     EI +K   L++K KK+ D    
Sbjct: 264  DQAKNILETDHPGTAIDRLSSVTFPRLKPLSKKVEFDPEIQEKIKQLRDKAKKTVDDSRS 323

Query: 106  --EFIKIRDRFNTY-KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                  + D  N    + +         +     Y   K++  V+DF DL      +L  
Sbjct: 324  AYALNSLDDALNDLGALAEPVRELAKTIQRFEKKYAIKKREKGVVDFSDLEHFALKILTS 383

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                  I  +       ++ DE QDT+ +Q  ++  +           S+    F VGD 
Sbjct: 384  SLKGEPIANQYSNYFQEVMTDEYQDTNRVQEAILSQV-----------SNSSNRFMVGDI 432

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQSIY F  AEP   L + R      +  G    +I+L ++FRS  +IL+ V+ VF    
Sbjct: 433  KQSIYRFRLAEPGIFLDKYRRYTSDGSGEG---MVIDLSMNFRSRDEILSAVNYVFRQTM 489

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVG----TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
            + +             +            V +    V++++S+  P Q   +   +    
Sbjct: 490  DERVGEIRYDDAASLVTGNHRFPEVFSPLVHVQLVNVAENESETEPHQTPDSDSDEKEQD 549

Query: 339  ESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
             S+A   AR +  +I +M  + ++F    G +R +  +DI++LVR            +  
Sbjct: 550  LSAAQAEARSMIASIKSMTESSSVFDPSTGHERPVSYRDIVILVRSMTWADTFMEEFKA- 608

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 I +  +        + ++ ++AL + I + + D+    +L+SP+   S D++ +I
Sbjct: 609  ---AGIPMYADLSNGYFTAIEVQIMIALLKIIDNPKQDVPLASVLRSPIVGLSADEMAEI 665

Query: 457  CTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                  ++             +       K +  +  + E    A+  +       +   
Sbjct: 666  RIDLPSSDFFSAIHHYADQDQVENESLQIKVKSFLTKLDEWRSSARSTALSSLIWKLYRD 725

Query: 511  KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRA 564
                        G +    L    +     E+ S+  L   +S + +           RA
Sbjct: 726  TGYYDYAGGMPGGKQRQANLKALYDRAKAYEKTSFRGLYRFLSFIAKMQERGDDLGEARA 785

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 + VR+MT+H +KGLE P+VF+     +       K   +               +
Sbjct: 786  IGEQEDVVRLMTIHKSKGLEFPIVFIPGINREFNQMDLRKSYLMHQKHGFGTQWFDPELR 845

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----------- 673
                +     + +  ++    E  R+LYV MTRA +QL +        +           
Sbjct: 846  VLYPSVQHELMKEISRREMLAEEMRVLYVAMTRAKEQLHLIGSGKNLPDQLEKWVNAGDD 905

Query: 674  --------KKSNQRTWYDMVYDSFHNDERV-----------------------KKIKLTN 702
                    ++   + + D +  +      +                         + LT 
Sbjct: 906  EGPLIPVPQRLRSKRYADWIIPAIGRHPDIQQCLRDQTADIPIPSTILDDRSKWSMTLTQ 965

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
            S +  +++       H     L +   +K         K+ F            L   T+
Sbjct: 966  STDLPQYVGDLQPEQHTIIDQLAKGAPVKSDPALDLEVKERFEWSYAHKEATQYLAKQTV 1025

Query: 763  DTKG---------------------KTNLESLLSDNQTFNRGLIIHKLLQV--IFTLPEH 799
                                     +          +   +G ++H ++Q+  +      
Sbjct: 1026 SELKQTLDSDYGSDDFVRHFTPDFAERPAFMQQKKLKPAEKGTLVHLVMQLVNLKQTSNK 1085

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC 857
            + +  +  +  +       +E   L +  I R  +             + E+  S +   
Sbjct: 1086 EIQAQLKQWVNE--DRLTHEEADQLPVEQIARFFQTETGAEMKEAKLVWRELPFSFEAPV 1143

Query: 858  P----------KKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIP------YTH 900
                        + + I G +D +  S    + + +YKT        +           +
Sbjct: 1144 KMAYPDWEGPSDEHVFIQGMVDALYQSNDGELVLVDYKTDRIPEHLQDDSAIGAYFINRY 1203

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
              Q+ +Y   +KDS+        L  V    +  I Q  L 
Sbjct: 1204 QTQIKLYSAAIKDSWKQNIDKACLYLVENGMIVTIDQEVLE 1244


>gi|301794254|emb|CBW36675.1| putative ATP-dependent exonuclease subunit A [Streptococcus
            pneumoniae INV104]
          Length = 1216

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 340/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEICSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHQDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK       +    Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQTFMSHFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALVEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +  +          E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIDEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q+I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQII-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|15901017|ref|NP_345621.1| exonuclease RexA [Streptococcus pneumoniae TIGR4]
 gi|15903084|ref|NP_358634.1| exonuclease RexA [Streptococcus pneumoniae R6]
 gi|116515444|ref|YP_816490.1| exonuclease RexA [Streptococcus pneumoniae D39]
 gi|81531934|sp|Q97QP9|ADDA_STRPN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA; AltName:
            Full=Exonuclease RexA
 gi|81588100|sp|Q8DPR6|ADDA_STRR6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|122278624|sp|Q04KF8|ADDA_STRP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|14972629|gb|AAK75261.1| exonuclease RexA [Streptococcus pneumoniae TIGR4]
 gi|15458659|gb|AAK99844.1| First subunit of major exonuclease [Streptococcus pneumoniae R6]
 gi|116076020|gb|ABJ53740.1| exonuclease RexA [Streptococcus pneumoniae D39]
          Length = 1216

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGRLIILKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                          +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAAFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|325663486|ref|ZP_08151896.1| recombination helicase AddA [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470385|gb|EGC73616.1| recombination helicase AddA [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 1052

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/1040 (15%), Positives = 323/1040 (31%), Gaps = 154/1040 (14%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+        E+  L+ + +          +                ++ Q L   +  Q
Sbjct: 43   LRKAL----EETMTLLEEGIRQCQEPDGPYMYADA-------LKEDRERIQKLLAQTTMQ 91

Query: 61   CIEERFSLLS-SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             + + F+      F   K       +T  +     ++K+ +   +D+F           M
Sbjct: 92   GMYDLFADWKWKRFAANKDKSVSEELTASVKNIREEVKDIVGALKDQFFYEAPEELWKDM 151

Query: 120  FKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV----SAWIRYK 172
             ++         L +     +EE K+   ++DF D+      +L ++       +     
Sbjct: 152  VEAGKTMSVLAGLVQSFADAFEEKKRSKHLIDFSDMEQYALRILTEKTEEGLIPSEAAKD 211

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
               +   ++IDE QD++LIQ  ++                   +F VGD KQSIY F  +
Sbjct: 212  YQNKFAEVMIDEYQDSNLIQEAIL-------TSVSTVSEGNYNVFMVGDVKQSIYRFRLS 264

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSED 290
             P+  + +             +   I+L  +FRS  ++L   + VF          ++ D
Sbjct: 265  RPELFMEKFNTY----NIEESQKQRIDLHKNFRSRREVLDSTNFVFEQIMTKELGEITYD 320

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                +   +    + G       V +  +     +          + + S   + AR IA
Sbjct: 321  EKAALYVGADYEEKPGMKAEVLLVNTAENFSEQTE----------VREASDRELEARAIA 370

Query: 351  YTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
              I  ++G   +F    G  R  +  DI++L R  K       +   + N   I      
Sbjct: 371  ARIKQLVGAHPVFDKKSGAYRPAKYSDIVILTRSLKGWT---DVFTEVLNREGIPTFTGS 427

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            +    +   I+ L+   R + +   DL    +LKS     S ++  KI  +  E    YE
Sbjct: 428  KEGYFETREIRLLLDYLRVLDNPRQDLPLAAVLKSMFAGLSSEEFAKIKCEEKE-VPFYE 486

Query: 469  YIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
             +Q +           K     + + +      + + H+    IL          +   G
Sbjct: 487  AVQDYRRMGDDRAIQEKLDRCYEKMEDFRERLPYTAIHELLWQILDETGYGNYVAAMPGG 546

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
             +    L+  +   +  E  SY  L   +  +EQ                  + VR+M++
Sbjct: 547  GQRAANLEMLVEKAIAFEATSYKGLFNFVRYIEQLRKYDIDYGEANIADEQADTVRLMSI 606

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE P+V +     +         + + P L           ++K    +   + +
Sbjct: 607  HKSKGLEFPIVIVAGMSKRFNMQDTTGSIVVHPELGVGVDAVDLEYRTKIPTFLKKVIQR 666

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQ 678
             ++     E  R+LYV +TRA ++LI+    +   +K                    S  
Sbjct: 667  KVQLENLGEELRVLYVALTRAKEKLILIGSISNLEKKLKSFASIQSREQTALPFGVLSRA 726

Query: 679  RTWYDMV-------------------------YDSFHNDERVKKIKLTNSINKDEWIAYE 713
             +++D +                                  V +      +   E     
Sbjct: 727  TSYFDWILPALFRNQVLADLLNGYGMNVPFTNAMYQKEVPLVVEEIFPEHLILQETAEEV 786

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                  E         +      ++I ++       +  +   L  +  + K ++  E  
Sbjct: 787  EQALTEELLRNWDTAYVYDERMREQIEEQFSYQYPYESMQKMKLKFTVSELKKRSEPEEE 846

Query: 774  LSD---------------------------NQTFNRGLIIHKLLQVIFT---LPEHKRKN 803
              +                               +RG   HK L+++         +   
Sbjct: 847  AGEILYEEPEIVPLVPNFMREKTEPGYTGTLSGASRGTAYHKFLELLDFGHSYTISQLYA 906

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM----TTAMSCDSYSEVSVSGKINCP- 858
                +C +  K+ P          I  LLE+P+       A S     E      ++   
Sbjct: 907  EAEKFCEE-GKMQPEMMESIYYKDILGLLESPLGLRLRKAAQSGCLKKEQPFVLGVSADT 965

Query: 859  ------------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
                        ++ +I+ G ID        I + +YKT        E +   +  QLS 
Sbjct: 966  IYPELFERQEEEEELLIVQGIIDVYFEEADGIVVVDYKTDR--AASREELAERYEKQLSY 1023

Query: 907  YEKILKDSYPNKSLVCLLIY 926
            Y ++L+     K +   +IY
Sbjct: 1024 YGEVLERL-TGKRVKEKIIY 1042


>gi|169833925|ref|YP_001694551.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6]
 gi|251764563|sp|B1IBR6|ADDA_STRPI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|168996427|gb|ACA37039.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6]
          Length = 1216

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLAHV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q             +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLPRFIRMIDQVLEAQHDLASVVVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|323692610|ref|ZP_08106842.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum
            WAL-14673]
 gi|323503307|gb|EGB19137.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum
            WAL-14673]
          Length = 1222

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 156/941 (16%), Positives = 302/941 (32%), Gaps = 115/941 (12%)

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K     E  K+     EK+++        +   +     +S L  L LA+   A + E
Sbjct: 294  PDKKEAVSECRKRIKKSVEKMREQYLFESPEKTLEDMEAGKESILMLLALAEEFAARFRE 353

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAW--IRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             K++  V+DF DL     ++L +        +  ++ ++ + IL+DE QD++L+Q  +I 
Sbjct: 354  KKREKNVVDFNDLEHFALEVLTEAGTGRPGPVADELSRQFDEILVDEYQDSNLVQETLIH 413

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
             ++ +             +F VGD KQSIY F  A P+  L +        T+    +  
Sbjct: 414  CISRE-------RFGSPNVFMVGDVKQSIYKFRLARPELFLEKYNSY----TSEESLYQK 462

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            IEL  +FRS   +L  ++ +F      +   +     T +   +S     G  Q      
Sbjct: 463  IELHQNFRSRDTVLMSINDIFFRIMTKKLGNIEYTDETALHPGASFEPYEGRKQGELDTE 522

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKKRV 370
                +    + E      D +   ++  + A  IA  I  + G +             R 
Sbjct: 523  LLLINTAGSELEGL---DDDISDYTARELEAGMIAGKIRELTGEENGMAVWDKDEKCYRP 579

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
             +  DI++L+R              +     I      R    D + ++ ++ L   I +
Sbjct: 580  ARYGDIVILLRSVSGWA---ESFTEILAHQGIPAFAESRTGYFDTVEVETVLNLLAVIDN 636

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICT------QRHETETVYEYIQKFANCGI------ 478
               D+    +LK+P    ++ ++  I        ++     +Y  +  F +         
Sbjct: 637  PIQDIPLASVLKAPFCGLADRELAHITAVCKRNIEKGRDRGLYSAVMNFLSESRADSEHG 696

Query: 479  ------------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-IS 519
                               K +  +K I  L  +A +   H     I             
Sbjct: 697  PEGEKSGTDELFNDAAIAEKLEKTVKLIEGLRKMAVYLPMHSLLHRIFDLTGYYDYVSAM 756

Query: 520  RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRI 574
              G      LD  +      E  SY  +   I  +E+              +   N VRI
Sbjct: 757  PAGETRRANLDMLVEKASSYEATSYRGVFHFIKYIEKLKKYNTDFGEASTVNEQGNTVRI 816

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            M++H +KGLE P+V +   G          K+ I               + K      + 
Sbjct: 817  MSIHKSKGLEFPIVIVAGMGKMFNKQDTRGKILIDSEFGIGTDYLDSRKRLKGPTLKKNV 876

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---------------- 678
            + + ++     E  R+LYV MTRA ++LI+       + +                    
Sbjct: 877  MKRRMELEALGEELRVLYVAMTRAKEKLIMTASDKNLDGRMEKWRQISLYGGQVPYTILT 936

Query: 679  --RTWYDMVYDSFHNDERVKKIKLTNSINK--DEWIAYEWSTHHPENTPLEREETIKQLM 734
               +  D +  S         +    + ++  +E           E       + I    
Sbjct: 937  MAGSCLDWLLMSIRESGCRISVTRVKAEDQLVNEIEEQLSKKVSREELLNRDPDRIYDAA 996

Query: 735  DEQKIPKKLF--SPIKNDINEPYILNPSTIDTKGKTNL-------------ESLLSDNQT 779
              +++        P + D+     ++ S +  +G                 E        
Sbjct: 997  YRKRLETSFHFRYPYEADVALNTKMSVSELKKEGMEAEEETAFLPTLPVFMEEEEVREGG 1056

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLL-LSITRLLENPM 836
             +RG   H+ ++++    +   +  +T    +         +    +    I R     +
Sbjct: 1057 TSRGTAYHRAMELLPF-SQITSEEEVTRLLNQYTEEGKLAKEARDMIWPPDIYRFFTTKL 1115

Query: 837  MTTAMSC----DSYSEVSVSGKINCPKKD-------IIISGRIDQISISQQNIFIFEYKT 885
                 +       Y E      I   +         ++I G ID     +  + + +YKT
Sbjct: 1116 GKRMQAAAEAGKLYKEKQFVMGIPAREMGDWDSDELVLIQGIIDAWFEEEDGLILVDYKT 1175

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             +    +I  +   +  QL  YEK L      +++    IY
Sbjct: 1176 DYVNDAQI--LVKRYKTQLDYYEKALTQML-GRNVKERYIY 1213


>gi|237820788|ref|ZP_04596633.1| recombination helicase AddA [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1216

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ +   K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALKMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|332075466|gb|EGI85935.1| recombination helicase AddA [Streptococcus pneumoniae GA41301]
          Length = 1216

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGRLIILKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                          +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAAFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSHEKLESKEYPAAKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|182684115|ref|YP_001835862.1| exonuclease RexA [Streptococcus pneumoniae CGSP14]
 gi|303255773|ref|ZP_07341815.1| exonuclease RexA [Streptococcus pneumoniae BS455]
 gi|251764565|sp|B2IPX3|ADDA_STRPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|182629449|gb|ACB90397.1| exonuclease RexA [Streptococcus pneumoniae CGSP14]
 gi|301801979|emb|CBW34707.1| putative ATP-dependent exonuclease subunit A [Streptococcus
            pneumoniae INV200]
 gi|302597285|gb|EFL64389.1| exonuclease RexA [Streptococcus pneumoniae BS455]
          Length = 1216

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIDSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADTYNEERKTQFAKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRN----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKAHENLYEKLVNAQKK 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLRDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  K++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIKNIEKYLILLGKDEVQVV 1214


>gi|303260559|ref|ZP_07346525.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293]
 gi|303262692|ref|ZP_07348631.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292]
 gi|303265228|ref|ZP_07351139.1| exonuclease RexA [Streptococcus pneumoniae BS397]
 gi|303266991|ref|ZP_07352865.1| exonuclease RexA [Streptococcus pneumoniae BS457]
 gi|303269649|ref|ZP_07355407.1| exonuclease RexA [Streptococcus pneumoniae BS458]
 gi|302636124|gb|EFL66620.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292]
 gi|302638272|gb|EFL68741.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293]
 gi|302640820|gb|EFL71209.1| exonuclease RexA [Streptococcus pneumoniae BS458]
 gi|302643471|gb|EFL73744.1| exonuclease RexA [Streptococcus pneumoniae BS457]
 gi|302645199|gb|EFL75435.1| exonuclease RexA [Streptococcus pneumoniae BS397]
          Length = 1216

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIDSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKSTL-ASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADTYNEERKTQFAKLGQLSDQIAILDYQERYRGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRN----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKAHENLYEKLVNAQKK 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLRDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  K++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIKNIEKYLILLGKDEVQVV 1214


>gi|20806785|ref|NP_621956.1| ATP-dependent exoDNAse beta subunit [Thermoanaerobacter tengcongensis
            MB4]
 gi|81590788|sp|Q8RCZ0|ADDA_THETN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|20515247|gb|AAM23560.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Thermoanaerobacter
            tengcongensis MB4]
          Length = 1204

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 165/985 (16%), Positives = 334/985 (33%), Gaps = 121/985 (12%)

Query: 35   VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF---FLTQKFTPQKNIITQEINK 91
                +E        +A  L++   ++   E    + +     L +        + +E+ K
Sbjct: 240  EERGLEGYLSLFQSEAHHLKELIDSKSWNEFKKKIEAISFERLPKASKEADAEVKEEVRK 299

Query: 92   KSPDLKEKLKKSQDEF---IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
               D+K+++++ +D+F    +   +    K++    A   L    +  Y E KK+  V+D
Sbjct: 300  LREDVKKRIREIRDKFFIDEEEEIKREIKKLYPVMKALADLILMFDKKYGEKKKEKGVID 359

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            FED+      +L   +    +     ++   I IDE QD+SLIQ  ++  +         
Sbjct: 360  FEDIEHFALKILSNEE----VVSYYREKFEEIFIDEYQDSSLIQEAILSLIA-------- 407

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
               +P   F VGD KQSIY F  A P     +     +   N       I L  +FRS  
Sbjct: 408  -RDNPPNRFMVGDVKQSIYRFRQANPYIFFEKYTSYSQEGEN-----KKILLYKNFRSRK 461

Query: 269  DILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            +I+  V+ +F      N   +       + + ++        +       +       ++
Sbjct: 462  EIIDAVNYIFEKIMSKNIGEVDYSEEEKLNYGANYESNPFEKE-----NERTVEVHLIER 516

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKR 383
            E    + +         + A  +   I  +        +   G  R ++ +DI VL+R  
Sbjct: 517  EREEEFEEDEEILDDMQVEAHVVGERIKGLFREGFKVYDKEIGGYRPVEYRDICVLLRA- 575

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
              T    +          I V  +      D   IK +++L + I +   D+  + +L+S
Sbjct: 576  --TEKWAYAFEEEFVKMGIPVFADTNAGYFDTAEIKTMLSLLQVIDNPMQDIPLLAVLRS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQK--FANCGISKFQHVIKYIHELIHIAQFCSPH 501
            P+F+F+E+++  I  +  +        +     +    K ++ +  +      + +    
Sbjct: 634  PIFSFTEEELVDIRLEDADGTIYEALKKASLREDELGEKVRNFLDSLKRWQEKSIYMPVD 693

Query: 502  DFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY--- 557
            +F   +               G E    L          E+ S+  L   ++ + +    
Sbjct: 694  EFLWYLYEETGFYSYVGAMPQGVERQANLRVLFERAKEYEETSFKGLFNFVNFINRLRTT 753

Query: 558  --PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                   +    N N VR+M++H +KGLE P+V +   G Q  +    +K+     L   
Sbjct: 754  STDMGSAKTVGENENVVRVMSIHKSKGLEFPIVIVAGLGKQFNTKDLNEKILYHHFLGIG 813

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            P    +  +    + +   +   +K  +  E  R+LYV +TRA ++LI+        E+ 
Sbjct: 814  PEFVDYRRRLSYPSIVKEAIKYKIKLESLSEEMRVLYVALTRAKEKLILVASVKDIKERA 873

Query: 676  SNQR------------------TWYDMVYDSFHNDERVKKIKLTNSINKD--------EW 709
                                  ++ D +  +      +K ++    I+ +        E 
Sbjct: 874  KKWGKAKLLGKKISEYDVLKSRSYIDWIGSALIRHRDLKLLREFAEISPELEQDSSKWEV 933

Query: 710  IAYEWSTHHPENTPLEREETIKQL------------MDEQKIPKKLFSPIKNDINEPYIL 757
              +       E    E  E +++L              E +       P       P  L
Sbjct: 934  KIWNKRDVIIERKKDEGIEVLERLNALNLEGLHTEFRKEVEERLNYVYPYDRSSKLPAKL 993

Query: 758  NPSTID-------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---T 795
            + + I                                      RG+ +H ++Q +     
Sbjct: 994  SVTEIKRILNDEVIDEETTSIFERRVLKTPLFLEKKRGLTPAERGIAMHLVMQKLDLSKD 1053

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSG 853
            L     K  I         +   ++ K +    I R  + P+    + + +   EV    
Sbjct: 1054 LSYRGIKEQIKDMVKNE--ILTEEQAKEVDANKIERFFKTPLGKRLLKAKEVRREVPFHI 1111

Query: 854  KIN-----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
            KI+             ++ I + G ID     +  + + +YKT +    +IE I   +  
Sbjct: 1112 KISSREIYRDLPEVYQEEFIAVQGIIDCFFEEEGELVLIDYKTDYVENGKIEEIRDKYRV 1171

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYV 927
            Q+ +Y K L++    K +    IY+
Sbjct: 1172 QIDLYGKALEEI-TGKKVKEKYIYL 1195


>gi|149013113|ref|ZP_01833959.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75]
 gi|147763058|gb|EDK70001.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75]
          Length = 1216

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 338/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE-- 727
                   N + W   +   F  D+     +             E  T  P     + +  
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSFQADNR 980

Query: 728  --ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
              +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|148998405|ref|ZP_01825847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70]
 gi|168576141|ref|ZP_02722035.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|168577182|ref|ZP_02722997.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|168577235|ref|ZP_02723036.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|168577251|ref|ZP_02723047.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|194397993|ref|YP_002037761.1| exonuclease RexA [Streptococcus pneumoniae G54]
 gi|251764542|sp|B5E4P5|ADDA_STRP4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|147755802|gb|EDK62847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70]
 gi|183577186|gb|EDT97714.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|183577191|gb|EDT97719.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|183577238|gb|EDT97766.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|183577934|gb|EDT98462.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016]
 gi|194357660|gb|ACF56108.1| exonuclease RexA [Streptococcus pneumoniae G54]
          Length = 1216

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/1019 (15%), Positives = 335/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QD + IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDINHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRN----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKAHENLYEKLVNAQKK 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +     +     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTALGQEIFANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|149025505|ref|ZP_01836438.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72]
 gi|147929377|gb|EDK80374.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72]
          Length = 1216

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 162/1019 (15%), Positives = 341/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHQDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK       +    Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  ELAKTFQTFMSHFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K + V+  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQVMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W  ++   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWVISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q+I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQII-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|254478432|ref|ZP_05091809.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653]
 gi|214035603|gb|EEB76300.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653]
          Length = 1184

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 165/985 (16%), Positives = 334/985 (33%), Gaps = 121/985 (12%)

Query: 35   VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF---FLTQKFTPQKNIITQEINK 91
                +E        +A  L++   ++   E    + +     L +        + +E+ K
Sbjct: 219  EERGLEGYLSLFQSEAHHLKELIDSKSWNEFKKKIEAISFERLPKASKEADAEVKEEVRK 278

Query: 92   KSPDLKEKLKKSQDEF---IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
               D+K+++++ +D+F    +   +    K++    A   L    +  Y E KK+  V+D
Sbjct: 279  LREDVKKRIREIRDKFFIDEEEEIKREIKKLYPVMKALADLILMFDKKYGEKKKEKGVID 338

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            FED+      +L   +    +     ++   I IDE QD+SLIQ  ++  +         
Sbjct: 339  FEDIEHFALKILSNEE----VVSYYREKFEEIFIDEYQDSSLIQEAILSLIA-------- 386

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
               +P   F VGD KQSIY F  A P     +     +   N       I L  +FRS  
Sbjct: 387  -RDNPPNRFMVGDVKQSIYRFRQANPYIFFEKYTSYSQEGEN-----KKILLYKNFRSRK 440

Query: 269  DILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            +I+  V+ +F      N   +       + + ++        +       +       ++
Sbjct: 441  EIIDAVNYIFEKIMSKNIGEVDYSEEEKLNYGANYESNPFEKE-----NERTVEVHLIER 495

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKR 383
            E    + +         + A  +   I  +        +   G  R ++ +DI VL+R  
Sbjct: 496  EREEEFEEDEEILDDMQVEAHVVGERIKGLFREGFKVYDKEIGGYRPVEYRDICVLLRA- 554

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
              T    +          I V  +      D   IK +++L + I +   D+  + +L+S
Sbjct: 555  --TEKWAYAFEEEFVKMGIPVFADTNAGYFDTAEIKTMLSLLQVIDNPMQDIPLLAVLRS 612

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQK--FANCGISKFQHVIKYIHELIHIAQFCSPH 501
            P+F+F+E+++  I  +  +        +     +    K ++ +  +      + +    
Sbjct: 613  PIFSFTEEELVDIRLEDADGTIYEALKKASLREDELGEKVRNFLDSLKRWQEKSIYMPVD 672

Query: 502  DFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY--- 557
            +F   +               G E    L          E+ S+  L   ++ + +    
Sbjct: 673  EFLWYLYEETGFYSYVGAMPQGVERQANLRVLFERAKEYEETSFKGLFNFVNFINRLRTT 732

Query: 558  --PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                   +    N N VR+M++H +KGLE P+V +   G Q  +    +K+     L   
Sbjct: 733  STDMGSAKTVGENENVVRVMSIHKSKGLEFPIVIVAGLGKQFNTKDLNEKILYHHFLGIG 792

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            P    +  +    + +   +   +K  +  E  R+LYV +TRA ++LI+        E+ 
Sbjct: 793  PEFVDYRRRLSYPSIVKEAIKYKIKLESLSEEMRVLYVALTRAKEKLILVASVKDIKERA 852

Query: 676  SNQR------------------TWYDMVYDSFHNDERVKKIKLTNSINKD--------EW 709
                                  ++ D +  +      +K ++    I+ +        E 
Sbjct: 853  KKWGKAKLLGKKISEYDVLKSRSYIDWIGSALIRHRDLKLLREFAEISPELEQDSSKWEV 912

Query: 710  IAYEWSTHHPENTPLEREETIKQL------------MDEQKIPKKLFSPIKNDINEPYIL 757
              +       E    E  E +++L              E +       P       P  L
Sbjct: 913  KIWNKRDVIVERKKDEGIEVLERLNALNLEGLHTEFRKEVEERLNYVYPYDRSSKLPAKL 972

Query: 758  NPSTID-------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---T 795
            + + I                                      RG+ +H ++Q +     
Sbjct: 973  SVTEIKRILNDEVIDEETTSIFERRVLKTPLFLEKKRGLTPAERGIAMHLVMQKLDLSKD 1032

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSG 853
            L     K  I         +   ++ K +    I R  + P+    + + +   EV    
Sbjct: 1033 LSYRGIKEQIKDMVKNE--ILTEEQAKEVDANKIERFFKTPLGKRLLKAKEVRREVPFHI 1090

Query: 854  KIN-----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
            KI+             ++ I + G ID     +  + + +YKT +    +IE I   +  
Sbjct: 1091 KISSREIYRDLPEVYQEEFIAVQGIIDCFFEEEGELVLIDYKTDYVENGKIEEIRDKYRV 1150

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYV 927
            Q+ +Y K L++    K +    IY+
Sbjct: 1151 QIDLYGKALEEI-TGKKVKEKYIYL 1174


>gi|225856772|ref|YP_002738283.1| recombination helicase AddA [Streptococcus pneumoniae P1031]
 gi|225725942|gb|ACO21794.1| recombination helicase AddA [Streptococcus pneumoniae P1031]
          Length = 1216

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLERFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLSSVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|327389307|gb|EGE87652.1| recombination helicase AddA [Streptococcus pneumoniae GA04375]
          Length = 1034

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 58   EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 117

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 118  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 177

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 178  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 234

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 235  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 283

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 284  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 339

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 340  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 390

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 391  --------KGVTFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 438

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 439  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 498

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 499  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 558

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 559  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 618

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 619  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 678

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 679  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 738

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 739  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 798

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 799  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 858

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 859  KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 915

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 916  DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 975

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 976  KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1032


>gi|221231865|ref|YP_002511017.1| putative ATP-dependent exonuclease subunit A [Streptococcus
            pneumoniae ATCC 700669]
 gi|251764564|sp|B8ZQ32|ADDA_STRPJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|220674325|emb|CAR68871.1| putative ATP-dependent exonuclease subunit A [Streptococcus
            pneumoniae ATCC 700669]
          Length = 1216

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 338/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHQDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK       +    Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  ELAKTFQTFMSHFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKANFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|168486450|ref|ZP_02710958.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00]
 gi|183570541|gb|EDT91069.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00]
          Length = 1216

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLNPLADAYNEERKTQFAKLGQLSDQITILDYQERYHQDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK       +    Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  ELAKTFQTFISHFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLIILKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K    +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLNQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE   VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFSYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  GLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|225854627|ref|YP_002736139.1| recombination helicase AddA [Streptococcus pneumoniae JJA]
 gi|225723772|gb|ACO19625.1| recombination helicase AddA [Streptococcus pneumoniae JJA]
          Length = 1216

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 337/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKANFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEVKQYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|307067686|ref|YP_003876652.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Streptococcus
            pneumoniae AP200]
 gi|306409223|gb|ADM84650.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Streptococcus
            pneumoniae AP200]
          Length = 1216

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 160/1019 (15%), Positives = 335/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QD + IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDINHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRN----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEYKAHENLYEKLVNAQKK 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +     +     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTALGQEIFANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|307706581|ref|ZP_07643388.1| recombination helicase AddA [Streptococcus mitis SK321]
 gi|307618036|gb|EFN97196.1| recombination helicase AddA [Streptococcus mitis SK321]
          Length = 1216

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 154/1018 (15%), Positives = 324/1018 (31%), Gaps = 141/1018 (13%)

Query: 15   LIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
             I + LW L  F    ++      +       +      +   +Q    +   ++L+   
Sbjct: 241  QIQQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQIYQAVLARVV 300

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS------- 122
               K    +++           L +   + +     +  ++ D+       +        
Sbjct: 301  AISKEKNGRSLTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHEDSWK 360

Query: 123  -TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                           Y + K++    +F D+   T ++L+       +R       + I+
Sbjct: 361  LAKTFQAFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVREAYQDRFHEIM 417

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    + 
Sbjct: 418  VDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEKF 466

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            +   +      ++  +I L  +FRS++++L+  + VF    + +    +     +   + 
Sbjct: 467  QRYAQ----NPKEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFAN 522

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                       + +       + ++E           E+  +   R +   I  +     
Sbjct: 523  TKLTPNSDNKAEFLLYDKDDTSEEEEG--------QAETKLTGEMRLVIKEILKLYKEQ- 573

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIKD 420
                     +  K+I +L   R              ++Y I V  +         L ++ 
Sbjct: 574  --------GVSFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQV 621

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N     
Sbjct: 622  MLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKMV 681

Query: 479  ------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525
                         K +  +  +       +  S +D    I   +       +   G   
Sbjct: 682  SSQKVLIHSALAEKLKQFMDILASWRLYTKTHSLYDLIWKIYNDRFYYDYVGALPNGPAR 741

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQEL----ISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
               L        + E++++  L          LE        A +   + V +MT+H +K
Sbjct: 742  QANLYALALRADQFEKSNFKGLSRFIGMINQVLEAQHDLASVAVAPPKDAVELMTIHKSK 801

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI---------- 631
            GLE P VF+++          + ++ +             +      ++           
Sbjct: 802  GLEFPYVFILNMDQDFNKQDSMSEVILSRKNGLGVKYIAKMETGAVEDHYPKTIKLSIPS 861

Query: 632  --VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK--------------- 674
                   + L+ ++  E  RLLYV MTRA  +L +    +    +               
Sbjct: 862  LTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAAKNGKLNSN 921

Query: 675  ----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HPENTPLER 726
                  N + W   +   F  D      +             E  T             +
Sbjct: 922  TRLQAKNFQDWIWAISKVFTKDHLNFSYRFVGEDQLTREAIGELETKSNLQDSSQADNRQ 981

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------------------------ 762
             ETIK+ ++  K  +   +  +  I  P +  PS I                        
Sbjct: 982  SETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIASQGQAVDK 1041

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                +    S          G   H+L+Q +      +R    +   T            
Sbjct: 1042 KISFELPDFSTKEKVTGAEIGSATHELMQRMD---LSQRPTLASLTETLKQVQTSPAVRD 1098

Query: 823  NL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQN 877
             + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + +  
Sbjct: 1099 KINLSKILAFFDTSLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEDK 1158

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            I +F+YKT  +   E   +   +  QL++Y + L  +Y  K++   LI + + +V ++
Sbjct: 1159 IVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIKNIEKYLILLGKEEVQVV 1214


>gi|225858940|ref|YP_002740450.1| recombination helicase AddA [Streptococcus pneumoniae 70585]
 gi|225720195|gb|ACO16049.1| recombination helicase AddA [Streptococcus pneumoniae 70585]
          Length = 1216

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 336/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLAHV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLSYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAQNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K      +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVAVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|148995044|ref|ZP_01823987.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68]
 gi|168488979|ref|ZP_02713178.1| recombination helicase AddA [Streptococcus pneumoniae SP195]
 gi|147926887|gb|EDK77936.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68]
 gi|183572407|gb|EDT92935.1| recombination helicase AddA [Streptococcus pneumoniae SP195]
 gi|332073494|gb|EGI83973.1| recombination helicase AddA [Streptococcus pneumoniae GA17570]
          Length = 1216

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 161/1019 (15%), Positives = 338/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQEFDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQITILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRN----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKAHENLYEKLVNAQKK 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKPHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q+I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQII-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1214


>gi|256851163|ref|ZP_05556552.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN]
 gi|260660587|ref|ZP_05861502.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN]
 gi|282934629|ref|ZP_06339872.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
 gi|297206028|ref|ZP_06923423.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16]
 gi|256616225|gb|EEU21413.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN]
 gi|260548309|gb|EEX24284.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN]
 gi|281301204|gb|EFA93505.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
 gi|297149154|gb|EFH29452.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16]
          Length = 1186

 Score =  370 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 165/987 (16%), Positives = 323/987 (32%), Gaps = 136/987 (13%)

Query: 41   TGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKN-IITQEINKKSPDLKEK 99
                   K+   ++ + ++   ++  + L +   T+   P+K+    +++  +   L + 
Sbjct: 245  KDFSGFSKRLTRVEASLESDTFDQIRASLQNCQFTEN--PRKSSKWDEDLLDRYASLSQT 302

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLT---------LAK-YLNAHYEEAKKKNCVLDF 149
              + +D+   +   F      + T              LA+  L A +   K+K  +LD+
Sbjct: 303  RAELKDQIKSLFAAFFVADNEEQTAVMKQSSSIIKAVCLAEKELIASFNSLKRKQNLLDY 362

Query: 150  EDLIINTNDLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
             D+      +L     +  +  +    +   IL+DE QD + +Q  +I+ +  +      
Sbjct: 363  SDMEQLAYQILTSDTTAGHLARQFYQNKFTEILVDEYQDINKLQERIIQLMKCE------ 416

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                   LF VGD KQSIY F  A+P   L + R   K      +    I L  +FRST 
Sbjct: 417  ----HNNLFMVGDVKQSIYGFRQADPSLFLNKYRAFAK-----EEAAERIVLADNFRSTK 467

Query: 269  DILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             +  +V+K+F+     +  G+   S   ++  +S                      +   
Sbjct: 468  PVTKLVNKLFNPLLTPDFGGIDYQSEGQLKFGASYY-------------------PDDLP 508

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKR 383
             +    F    + S  S   + +   I  +I       +   G KR I+  DI +L R R
Sbjct: 509  TASELLFYDKSEGSEESNQIQLVINRIKQLIDEGFEVFDVKTGLKRPIEFSDIAILTRSR 568

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                              I +  +D         +  +M   + + + + D+    +L+S
Sbjct: 569  SQNLD----LLKQFAQNNIPLFVSDVANYFQTFELTIIMNYLKIVDNPDQDIPLAAVLRS 624

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSP 500
            P+FNF E D+ KI   +    + Y  +  + +       + +  +  + +L   A     
Sbjct: 625  PIFNFKETDLAKI-RIKSPNTSFYSALINYVSENDELSKRIKDFLNQLADLRDFALNHRI 683

Query: 501  HDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-- 557
             +    I       +   S   G +    L+         E   +  L + I+ + +   
Sbjct: 684  SETIWSIYARTSLLEIVTSLPNGKQRRINLENLYERANSYESAGFKGLYQFINFINRMRK 743

Query: 558  ---PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                           N V++MT+H +KGLE P+VF +    Q           I     D
Sbjct: 744  NQKDLAQPLLSKEAENSVQLMTIHASKGLEFPIVFYLGLEHQFQKSDLSGNYII---SGD 800

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
              GI +     +  + + +      +K   EE  R++YV +TRA  +LI+  +    ++ 
Sbjct: 801  SCGITVVRSDWRIDSLVKAMGNVTKQKQLLEEEARIMYVAVTRARQKLILVTNFKEFSKD 860

Query: 675  KSN------------------------------------------------QRTWYDMVY 686
              N                                                 +  + +V 
Sbjct: 861  TENMGASLANDGSLTLTSELAAQKPADLLLPQLALNRQFINQVTDLRPEVESKQDFLVVT 920

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                  E V+K  +       E+I            P +   T        ++ K    P
Sbjct: 921  GDAEAVELVEKQDVNEEGKVSEFIVKNVKKLFEATYPFQDATTTTAYQSVSELKKAFNDP 980

Query: 747  IKNDINEPYILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
            I +++     +  +   +                    G  +H +LQ      +   +  
Sbjct: 981  IDDELANSRFIKSANRYLQDIDTRPGFLFEDGFTGAEIGTAMHLILQFFDYQGKTSVEAE 1040

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVS---------G 853
            I     ++ KL P       +  I+  + +       +       EVS S          
Sbjct: 1041 IEKLV-QSGKLNPKIVPHLPITEISWFVNSNFAKKFWNDPTKLKREVSFSSLLPAADVFK 1099

Query: 854  KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEK 909
              + P   I++ G ID   +    I +F+YKT +    ++      I   +  QL +YE+
Sbjct: 1100 PFSDPNAKILVHGTIDGYYLDDDGIILFDYKTDYVNKNQLAQSIAKIKDKYTGQLRLYER 1159

Query: 910  ILKDSYPNKSLVCLLIYVSEPKVFIIP 936
             L      K     LI +   ++  + 
Sbjct: 1160 ALNQLGKEKVKSKYLILLDAQEIVEVD 1186


>gi|260583800|ref|ZP_05851548.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC 700633]
 gi|260158426|gb|EEW93494.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC 700633]
          Length = 1244

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 167/961 (17%), Positives = 313/961 (32%), Gaps = 134/961 (13%)

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            I ++ +      ++++  +           +   ++   L    +       ++  KK +
Sbjct: 306  IKRKRDSLKKHWEDQVLATAFFESPEVQMKHLRNIYPMMLHLSQVVLKFYEAFQLEKKTS 365

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKI-DQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              +DF DL  +T  +L        I  K   +    +LIDE QD + +Q  ++ S+  + 
Sbjct: 366  NKIDFSDLEHDTLSILSTEKNGVLIAKKYYKELFTEVLIDEYQDVNRVQEAILTSVARE- 424

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                        LF VGD KQSIY+F  A+P      +   +  A   G     I L  +
Sbjct: 425  ----------NNLFMVGDVKQSIYAFRLADPSL---FRDKYEAYADENG--GKRIILAEN 469

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            FRS   +L+  + +F    + +    D   +   ++  +        + +     ++   
Sbjct: 470  FRSRDQVLSFTNLIFRQIMDHELGQIDYDDSAALKTGNLNYSDDTDKFSECYIIQNANLE 529

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIG-------TDTIFSNGKKRVIQAKDI 376
             ++E  +      P +SSAS     IA  I  ++         ++   N KKR IQ KDI
Sbjct: 530  EEEEESSGLESESPIDSSASAEVHFIAGKIKELMANQFEIMHEESTKENPKKRPIQYKDI 589

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            ++L   + +  LI  +       Y+I V+            I  +M+  + I +   D+ 
Sbjct: 590  VILAPTKANNGLIEEIF----TQYQIPVLVQKNLQYFKRTEIAIMMSALKIIDNPTQDIP 645

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG----------------ISK 480
            FV +L+S +    E  +  I  + +++ + YE    F                      +
Sbjct: 646  FVSVLRSGIVGLDEIALAHI-RKNNKSCSFYEACVHFVEHFTLEEVNYYDSSQQQQLKER 704

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN 539
             +  +  +     IA   S       I            +  G + +  L     +    
Sbjct: 705  IKSFLDQLESWRDIANHQSISTLIWQIYMDTNYLTYVHGQSVGQQRVLNLHALYKYAKDF 764

Query: 540  EQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            E +S+  L+  +  ++Q              S   + VR+MT+H +KGLE PVVFL++ G
Sbjct: 765  EDSSFKGLRNFVRFIQQMQHKKQDLEEPTQISDEEDAVRVMTIHASKGLEYPVVFLMNAG 824

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +       ++      L           + +          K  K     E  R LYV 
Sbjct: 825  KKFNQQDIRQQAIRSDELGVGVKYLQLPERIQWTTIPYVMAYKAEKNKLLSEEMRKLYVA 884

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYD-------------------MVYDSFHNDER- 694
            MTRA ++LII       ++ K       D                    +  +    +  
Sbjct: 885  MTRAREKLIIVGSLKDFDKFKEEHSMIEDIDDETLPYSLRYHVDNYLTWILMATMRKQEK 944

Query: 695  --------------VKKIKLTNSINKDEWIAYEWSTHHPENTPLE-REETIKQLMDEQKI 739
                             +              EW     E  P++     ++ L      
Sbjct: 945  VSFHQEVIDFEQIKQNALNWIQETETTSINEVEWLQKQVEGKPVKNLSNLLEDLKQTYPY 1004

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ--------------------- 778
                 +     ++E   +N    D K    LE    + +                     
Sbjct: 1005 LLASTTASYQSVSEIKRMN-EEPDVKQLPQLEEQTQETEKNVQQYVYLTSELAKPSFIES 1063

Query: 779  -----TFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSI 828
                    RG  +H L+Q +     +     +  I             KE   ++    +
Sbjct: 1064 KQKVSAAERGSGLHLLMQKLDLTKEITPEFIQETIQQLVETQFL---EKEVAAVIPVDQV 1120

Query: 829  TRLLENPMMTTAMSCDSY--SEVSVSG---------KINCPKKDIIISGRIDQISISQQN 877
                ++          +    E + S           +   +  ++I G ID        
Sbjct: 1121 YHFFQSEFGQWIQEHQALLNREQAFSHVVTAKRIFKHLPDNEDSMLIHGIIDGFVELDDE 1180

Query: 878  IFIFEYKTHHHVPQE--IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            I +F+YKT H VP +  I+ +   +  QL++Y + L+ SY  K    +L  +S  +   I
Sbjct: 1181 IILFDYKTDHVVPTQKGIQKVVDKYKQQLNLYAEALETSYQKKVTKRMLCLLSIGQSIDI 1240

Query: 936  P 936
             
Sbjct: 1241 S 1241


>gi|229552293|ref|ZP_04441018.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus
            LMS2-1]
 gi|258539702|ref|YP_003174201.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229314365|gb|EEN80338.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus
            LMS2-1]
 gi|257151378|emb|CAR90350.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus Lc 705]
          Length = 1236

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 149/1043 (14%), Positives = 301/1043 (28%), Gaps = 133/1043 (12%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-----LKKAQTLQQASQTQC- 61
            +           +WP    ++  +   ++ + E  N         +    L         
Sbjct: 205  APEAWAATFTHQIWPRTKRKLMQVFTTLTQADELANRLPNPVWHQQITADLNPLQSLLDN 264

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK--- 118
             E  +  +    +   F       ++ ++     LK + K+ +D   KI           
Sbjct: 265  PEPSYEAVRDALVQHDFLAWSR-ASKGLDDDDKALKNEAKQLRDAAKKIWQDQLAPDFAL 323

Query: 119  -----------MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDV 165
                       +         +A          K    V D+ D+  N   +L+      
Sbjct: 324  TSEQITDLLRTVQPMMTMLTEVALTFLDALTAEKAVRHVQDYSDIAHNALRILQQKDPQT 383

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             A I        + +++DE QD S +Q  +   L                 F VGD KQS
Sbjct: 384  GAPIADNYRASFDEVMVDEYQDISPLQEAL---LAAVSTTDPGDR------FMVGDVKQS 434

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284
            IY F  A+P+  +++ +               I L  +FRST ++L   + +FS   +  
Sbjct: 435  IYGFRLADPQLFIQKYQAFAN-HPETPTAPERIILAENFRSTKNVLAFTNLIFSQIMDPE 493

Query: 285  -QGLSEDSTTTIRHRSSRIGQ--VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
               L+ D    +++ +   G        +     +  D         W++  +       
Sbjct: 494  VGDLAYDDNAALKYGALDYGDCHPAVKVMLYSKATSDDDDETDATSDWSATDEDDEPLDV 553

Query: 342  ASILARRIAYTISNMIGTDTI----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            A+   + +   I  ++          +N + R I+ +DI +L R+     LI        
Sbjct: 554  ATGQTQMVIAEIQRLVSDPHAQLWDRANQQYRRIRYRDITLLTRQTTQNSLIQTQFAA-- 611

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                + +   D         +  ++AL + I + + D+  V +L+SP+   S D +  I 
Sbjct: 612  --AGVPLFVADTKNFFKTTELMVMLALLKIIDNPKQDIPLVAVLRSPIVGLSADQLALIR 669

Query: 458  TQRHETETVYEYI--------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                +                   A    +     +  ++    +A+          I  
Sbjct: 670  LAAKQVPYYDAVTAFLTGTPTTPLAKRTHATLAAFLDQLNHFRDLARENDLVTLLWAIYQ 729

Query: 510  AKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKR 563
                         G++    L   ++     E   +  L   I  +              
Sbjct: 730  ETGFLDYVGGTPGGSQRQANLLALVDRARTYESGGFKGLFAFIHFITLMQKQDQDLATPA 789

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                +++ V++MT+H +KGLE PVVF++ T    F+ +      I+              
Sbjct: 790  QVDPDNDAVKLMTIHKSKGLEFPVVFVLQTNKH-FNRRDQSGPAILTKNGIGIKWLDPQT 848

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--- 680
            + +             +  T  E  RLLYV +TRA  +L +   + +  +  S  +T   
Sbjct: 849  RVEYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGQQLTSADKTVAK 908

Query: 681  ----------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                                  + D +  +     +VK +  T           E+S   
Sbjct: 909  WAKAAEGEQLTLAPQIRGAATNYLDWIGPALIRHPQVKGLTETTVKPALIADPTEFSIAI 968

Query: 719  PENTP----LEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPSTIDTKGKTNLES 772
              +      +  +   K       +                    + S I          
Sbjct: 969  ETHPQIKVGVATKTPAKTDAPAIDLTGWFAKQYPFQAATTTAGFQSVSEIKRAFDDPDTM 1028

Query: 773  LLSDNQ--------------------------TFNRGLIIHKLLQVIFTLPEHKR--KNF 804
             L                                  G   H LLQ++             
Sbjct: 1029 ELVSADRFLGQKPPLHDLSAPAFLTETSGGGNAAAIGTATHLLLQLVDLTKPITLNSLEA 1088

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINC----- 857
            +  +      +      +  L ++ R     +     +       EV  S  +       
Sbjct: 1089 LRHHLITTGVMPAEVAKRIDLTALVRFFATDLGQLLQAKPQQVQREVPFSMLLPANQLFE 1148

Query: 858  -----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                 P +D+++ G +D        + +F+YKT H    +   +   +  QL++Y + L 
Sbjct: 1149 ILQNDPGEDVLVHGIMDGYVTEADGVTLFDYKTDHEP--DPAKLVARYRGQLNLYAQALA 1206

Query: 913  DSYPNKSLVCLLIYVSEPKVFII 935
               P       L+ +    +  +
Sbjct: 1207 QLQPEPVTHRYLVLLRTGTIVDL 1229


>gi|331087018|ref|ZP_08336093.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409468|gb|EGG88911.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1229

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 158/1038 (15%), Positives = 315/1038 (30%), Gaps = 150/1038 (14%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+        E+  L+ + +          +                ++ Q L   +  +
Sbjct: 220  LRKAL----EETMALLEEGIRQCQEPDGPYMYADA-------LKEDRERIQKLLAQTTMR 268

Query: 61   CIEERFSLLS-SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             + + F+      F   K       +T  +     ++K+ +   +D+F           M
Sbjct: 269  GMYDLFADWKWKRFAANKDKSVSEELTASVKNIREEVKDIVGALKDQFFYEAPEELWKDM 328

Query: 120  FKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV----SAWIRYK 172
             ++         L +     +EE K+   ++DF D+      +L ++       +     
Sbjct: 329  VEAGKTMSVLAGLVQSFADVFEEKKRSKHLIDFSDMEQYALRILTEKTEEGLIPSEAAKD 388

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
              ++   ++IDE QD++LIQ  ++                   +F VGD KQSIY F  +
Sbjct: 389  YQKKFAEVMIDEYQDSNLIQEAIL-------TSVSTVSEGNYNVFMVGDVKQSIYRFRLS 441

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSED 290
             P+  + +             +   I+L  +FRS  ++L   + VF          ++ D
Sbjct: 442  RPELFMEKFNTYSIE----ESQKQRIDLHKNFRSRREVLDSTNFVFEQIMTKELGEITYD 497

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                +   +    + G       V +  D     +          + + S   + AR IA
Sbjct: 498  EKAALYVGADYEEKPGMETEVLLVNTAEDFSEQTE----------VREASDRELEARAIA 547

Query: 351  YTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
              I  ++G   +F    G  R  +  DI++L R  K       +   + N   I      
Sbjct: 548  ARIKQLVGVHPVFDKKSGAYRPAKYSDIVILTRSLKGWT---DVFTEVLNREGIPTFTGS 604

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            +    +   I+ L+   R + +   DL    +LKS     S ++  KI  +  E      
Sbjct: 605  KEGYFETREIRLLLDYLRVLDNPRQDLPLAAVLKSMFAGLSSEEFAKIKCEEKEVPFYQA 664

Query: 469  YIQKFAN----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
                           K     + + +      + + H+    IL          +   G 
Sbjct: 665  VQDYRRMGDDRAIQEKLDRCYEKMEDFRERLPYTAIHELLWQILDETGYGNYVAAMPGGG 724

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578
            +    L+  +   +  E  SY  L   +  +EQ                  + VR+M++H
Sbjct: 725  QRAANLEMLVEKAIAFEATSYKGLFNFVRYIEQLRKYDIDYGEANIADEQADTVRLMSIH 784

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V +     +         + + P L           ++K    +   + + 
Sbjct: 785  KSKGLEFPIVIVAGMSKRFNMQDTTGSIVVHPELGVGVDAVDLEYRTKIPTFLKKVIQRK 844

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679
            ++     E  R+LYV +TRA ++LI+    +   +K                    S   
Sbjct: 845  VQLENLGEELRVLYVALTRAKEKLILIGSISNLEKKLKSFASIQSREQTALPFGVLSRAT 904

Query: 680  TWYDMV-------------------------YDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            +++D +                                  V +      +   E      
Sbjct: 905  SYFDWILPALFRNQVLADLLNGYGMNVPFTNAMYQKEVPLVVEEIFPEHLILQETAEEVE 964

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                 E         +       +I ++       +  +   L  +  + K ++  E   
Sbjct: 965  QALTEELLRNWDTAYVYDERMRAQIEEQFSYQYPYEAMQKMKLKFTVSELKKRSEPEEAA 1024

Query: 775  SD---------------------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
             +                               +RG   HK L+++     +        
Sbjct: 1025 GEILYEEPEIVPLVPNFMREKTEPGYTGTLSGASRGTAYHKFLELLDFGKSYTISQLYAE 1084

Query: 808  YCT--KNAKLWPAKEYKNLLLSITRLLENPMM----TTAMSCDSYSEVSVSGKINCP--- 858
                 +  KL P          I  LLE+P+       A S     E      ++     
Sbjct: 1085 AAKFCEEGKLKPEMMESIYYKDILGLLESPLGLRFQKAAQSGCLKKEQPFVLGVSADTIY 1144

Query: 859  ----------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                      ++ +I+ G ID        I + +YKT        E +   +  QL  Y 
Sbjct: 1145 PELLERQEEEEELLIVQGIIDVYFEEPDGIVVVDYKTDR--AASREELAERYEKQLRYYG 1202

Query: 909  KILKDSYPNKSLVCLLIY 926
            ++L+     K +   +IY
Sbjct: 1203 EVLERL-TGKRVKEKIIY 1219


>gi|148989182|ref|ZP_01820572.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73]
 gi|147925405|gb|EDK76483.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73]
          Length = 1034

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 162/1019 (15%), Positives = 338/1019 (33%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 58   EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIDSLNQESDSQAYQAVLARV 117

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 118  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHQDTW 177

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK       +    Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 178  ELAKTFQTFMSHFVEAYRQCKRQENAFEFTDISHYTIEILENFP---QVRESYQERFHEV 234

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 235  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 283

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      QK  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 284  FQRYAQ----NPQKGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 339

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 340  NTKLTPDPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 390

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 391  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 438

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 439  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 498

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 499  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 558

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 559  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 618

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 619  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 678

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 679  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 738

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 739  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 798

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 799  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 858

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 859  KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 915

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 916  DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 975

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI + + +V ++
Sbjct: 976  KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEVQVV 1032


>gi|154485117|ref|ZP_02027565.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC 27560]
 gi|149734070|gb|EDM50189.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC 27560]
          Length = 1220

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 152/1014 (14%), Positives = 327/1014 (32%), Gaps = 160/1014 (15%)

Query: 43   NPTILKKAQTLQQASQTQCIEERFSLLSSFFLT-----QKFTPQKNIITQEINKKSPDLK 97
               +      LQ+ ++++      S L +   T     +    +K    + I   +    
Sbjct: 245  AKALTPIIDKLQEITESRTYSAMQSELQNIPSTRVSGKKDCNERKKEQVKAIKNDATKAI 304

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            + L   Q      +   +  +   S      L        +E K++  ++DF D      
Sbjct: 305  KDLTTKQFNLTLNQVFESICETKSSVEYIGKLTLEFMKRLKEQKEEKGIMDFNDQAFFAL 364

Query: 158  DLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
             +L + D     V +     +  +   I+IDE QD+++IQ  ++ ++T+ F         
Sbjct: 365  HILNEYDKDGNLVPSETAKNMATQFKEIMIDEYQDSNIIQEAILSAITKGF--------G 416

Query: 213  PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
               +F VGD KQSIY F  AEPK  L +        +    K   I L  +FRS  +++ 
Sbjct: 417  INNMFMVGDVKQSIYRFRNAEPKLFLEKYNSFSDDPSADSVK---IVLDKNFRSRREVIE 473

Query: 273  VVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
             V+ +F    +    G+   +   +   +             + V       + +     
Sbjct: 474  SVNFLFDFVMHEEVGGIDYKNGNGLVLGADYDEPPAGQDNLTEFVMVEGGDKSDE----- 528

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDT----IFSNGKKRVIQAKDILVLVRKRKDT 386
                           A  +A  I  +   +T           R ++  DI++L+R  KD 
Sbjct: 529  ---------------AAYVARKIKEITNPETGLKITEKGKDMRPVRYGDIVILLRSMKDN 573

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                 + R    +  I V    +      + +  +  +   I +   D+    +L SP+F
Sbjct: 574  S---DIYREQLENNGIPVFAESKTGYYKTMEVMTITNMLSIIDNPRQDIPLAAVLTSPMF 630

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPH 501
             F  + +  I T+    E+ Y+ ++++          ++    +  + +  ++  + + +
Sbjct: 631  GFDSNQLAIIKTEN-VCESFYDCVEQYSLSGSDVELRTRLTEFLNTLTKFRNMVPYTTVY 689

Query: 502  DFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            D    +L              G + +  +       +  ++ SY  L   +  +E+    
Sbjct: 690  DLINTLLDETGYAFYIRSMPGGKKRLLNIQALKEKAVAYDETSYKGLFNFLRYIEKIQYL 749

Query: 561  IKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
             K          N N VRIM++H +KGL+ PVVFL +T     +  +   +      N  
Sbjct: 750  AKDDGEASTVNENDNIVRIMSIHKSKGLQFPVVFLCNTNGTSKNEANQ--LVSGADGNIG 807

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                    ++K    + + +    K+    E  R+LYV +TRA ++L I      + ++ 
Sbjct: 808  IDCINNKLKTKQTPLLKTYIRMSNKEEDVAETLRILYVALTRAKEKLYITGLVKNAEKQI 867

Query: 676  SNQRTW-------------------YDMVYDSFHNDERVKKIKLTNSINK---------- 706
                +                     +++  +   ++    ++      +          
Sbjct: 868  GEFESQIYDNSELMLYNDVIGAKTIMELIGKTIGRNKAFDCVRTDKDATECGNPLYDKDS 927

Query: 707  ------DEWIAYEWSTHHPENTPLEREETI---------KQLMDEQKIPKKLFSPIKNDI 751
                  +E           + T   ++ET+         K+    +K+ ++         
Sbjct: 928  FIKVKVEEQPDVILGLAAEDITDSIKKETMLMEMKQLANKENTSIEKLFQRFQFQYPYIE 987

Query: 752  NEPYILNPSTIDTKGKTNLESLLSDNQTFN------------------------------ 781
            +       S  + K ++       +   F                               
Sbjct: 988  DITLHSKASVTEIKKQSQGMEQEEEQDAFQAFGEEVELPEIIPDFEKEDIDEPQYLTGAM 1047

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKN-LLLSITRLLENPMMT 838
            RG   H++ +++    E   +  +        +A L       + +   I    ++ +  
Sbjct: 1048 RGTAYHRIFELLDMELEEYNQETVKKMIDGFVDAGLIDRMGAASVMRKDIIDFTKSDLFR 1107

Query: 839  TAMSC----DSYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTH 886
                       Y E      +           K+ +II G ID   +      I +YKT 
Sbjct: 1108 RMKKAYANNQLYREQHFLMGVPACEINSNTTSKETMIIQGIIDLCFVENDKYVIVDYKTD 1167

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS----LVCLLIY-VSEPKVFII 935
                  +E +   +  QL  Y+  ++    ++     +  ++IY V   +   I
Sbjct: 1168 KV--DTMEELVERYHVQLECYKLAIEQILGSEPGVNKVSEMIIYSVHLGQQITI 1219


>gi|148985758|ref|ZP_01818886.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71]
 gi|147922062|gb|EDK73185.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71]
 gi|301800092|emb|CBW32693.1| putative ATP-dependent exonuclease subunit A [Streptococcus
            pneumoniae OXC141]
          Length = 1216

 Score =  368 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 162/1021 (15%), Positives = 335/1021 (32%), Gaps = 143/1021 (14%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEICSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFTKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGRLILLKENFRSSSEVLSTTNDVFERLMDQEVGEINYDNMHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKQYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ +   K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALKMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV--SEPKVFI 934
             I +F+YKT  +   E   +   +  QL++YE+ L  +Y  +++   LI +   E +V  
Sbjct: 1158 KIVLFDYKTDRY--DEPSQLVDRYRGQLALYEEALSRAYSIENIEKYLILLGKDEAQVVK 1215

Query: 935  I 935
            +
Sbjct: 1216 V 1216


>gi|307708679|ref|ZP_07645142.1| recombination helicase AddA [Streptococcus mitis NCTC 12261]
 gi|307615253|gb|EFN94463.1| recombination helicase AddA [Streptococcus mitis NCTC 12261]
          Length = 1216

 Score =  368 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 162/1019 (15%), Positives = 331/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    + N     +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLGNDAKEFAKAPYLENVQLILDEIGSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y E K++    +F D+   T ++L+K       R       + +
Sbjct: 360  ELAKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILEKFPQG---REAYQDRFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      ++  +I L  +FRS++++L+  + VF    + +    +  +  +   +
Sbjct: 466  FQRYAQD----SKEGKLILLKENFRSSSEVLSATNDVFKRLMDQEVGEINYDSMHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHKE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KSVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVQENLYEKLVNAQKQ 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K    +  +      A+  S +D    I   +       +   G  
Sbjct: 681  VASQKNLIHTDLTEKLNQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSKSR 628
            KGLE P VF+++          + ++ +                           +    
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRKNGLGVKYIAKMETGAVEAHYPKTIKLSIP 860

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
            +       + L+ ++  E  RLLYV MTRA  ++ +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKIYLVGKGSREKLESKEYPATKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D      +             E     P          
Sbjct: 921  NTRLQARNFQDWIWAISKVFAKDHLNFSYRFVGEDQLTREAIGELENKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI----------------------- 762
            + ETIK+ ++  K  +   +  +  I  P +  PS I                       
Sbjct: 981  QSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVD 1040

Query: 763  -DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                 +    S          G   H+L+Q I      +R    +   T           
Sbjct: 1041 KKISFELPDFSTKEKVTGAEIGSATHELMQRID---LSQRPTLASLTETLKHVQTSPAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    +S     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLAKILAFFDTALGQEILSNTNHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYED 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++Y + L  +Y  +++   LI + + +V ++
Sbjct: 1158 RIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIDKYLILLGKDEVQVV 1214


>gi|330684454|gb|EGG96177.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis
            VCU121]
          Length = 1220

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 158/949 (16%), Positives = 305/949 (32%), Gaps = 131/949 (13%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +    K  D+  K+K           + +   +         + K +   + + K+   V
Sbjct: 303  KASYDKYKDMINKVKNDYFSRTPEELKRDMQLLAPRVNYLSEIVKDVIHDFSKHKRSRNV 362

Query: 147  LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            LDF D       +L   D   + I     Q  + IL+DE QDT+ +Q +++  +      
Sbjct: 363  LDFADYEHFALQILTNEDGTPSAIAEMYRQHFSEILVDEYQDTNRVQEKILSCI------ 416

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
             K    S   LF VGD KQSIY F  A+P   + +          AG     I+L  +FR
Sbjct: 417  -KTGDESNGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFNVDGYEAG---MRIDLSQNFR 472

Query: 266  STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            S  ++L+  + +F     E    ++ D    + + +        V+L   V +  ++   
Sbjct: 473  SRKEVLSTTNYLFKHMMDEAVGEITYDDAAQLYYGAPFDEVNHNVELRTLVEASSEN--- 529

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVR 381
                          + +     A  I   + +++    ++       R    KDI++L R
Sbjct: 530  -------------SKLTGTEQEANYIVEQVKDILEHRKVYDMKTNTYRPATYKDIVILER 576

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                        +    D  I    N R    +   ++ +++  R + +   D+  V ++
Sbjct: 577  SYGQARN----LQQAFKDNDIPFHVNSREGYFEQTEVRLILSFLRTVDNPLQDIYLVGLM 632

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIA 495
            +S ++ F+ED++  I       +  Y+ IQ++    ++      K +  +  I      +
Sbjct: 633  RSVIYQFTEDELANIRVFSPNDDYFYQSIQQYIKNDMANKKLVTKLKRFLADIQHYQDYS 692

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            Q    +             Q F    G       L    N  +  E +S+  L + I  +
Sbjct: 693  QRYPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFI 752

Query: 555  EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++     K     N      N VR+MT+H++KGLE P V       +   +   +++ + 
Sbjct: 753  DELIDRGKDFGEENIVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKRFNKNDLSRQVVLN 812

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                               +          +K    E  RL+YV +TRA +QLI+     
Sbjct: 813  QKYGLGMDYFDVNEDIAYPSLSSVAYKAINEKEMISEEMRLIYVALTRAKEQLILIGRVK 872

Query: 670  TSNE--------------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
               E                          T    +   + +       K  ++I + + 
Sbjct: 873  DEKELGKLERLPISGNHLAVNERLTAPTPFTMIYSILAKYQSSSITNDQKFESNIEQLDS 932

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPK-------------------KLFSPIKND 750
                    + +N      ET+    + + +                         P + D
Sbjct: 933  NVKPRVNLYVDNFEDISTETLVSESELRTVEDIENDQSGNDDIKAKIKEKLIFEYPYQKD 992

Query: 751  INEPYILNPSTI-----------------------DTKGKTNLESLLSDNQTFNRGLIIH 787
            I +P   + S +                        T  +    S     +    G ++H
Sbjct: 993  IEKPSKQSVSELKRQLETEESGTNYDRVRQYRIGVSTYERPKFLSQQGKRKANEVGTLMH 1052

Query: 788  KLLQVIFT----LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-S 842
             ++Q +      L E +   +I      N     AKE       I   +++ +      +
Sbjct: 1053 TVMQHLPFKMSRLTETELDEYIDRLIETNIIESDAKE-DIRFKEIMSFIQSDLYMNIANA 1111

Query: 843  CDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---HHVPQE 892
               Y E+          +I    + + II G ID I +S+   +  +YKT          
Sbjct: 1112 DQVYRELPFVVNQSKVDQIELEDEGVSIIQGMIDLIYVSEGQYYFVDYKTDAFNRRKGLT 1171

Query: 893  IEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
             E     +   +  Q+  Y   L+     K +   L +     +  I  
Sbjct: 1172 DEEIGQQLKDKYQIQMKYYRNTLETILQTK-VKGYLYFFKFGML-EIDD 1218


>gi|238854633|ref|ZP_04644963.1| recombination helicase AddA [Lactobacillus jensenii 269-3]
 gi|260664424|ref|ZP_05865276.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US]
 gi|282932976|ref|ZP_06338373.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
 gi|238832423|gb|EEQ24730.1| recombination helicase AddA [Lactobacillus jensenii 269-3]
 gi|260561489|gb|EEX27461.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US]
 gi|281303011|gb|EFA95216.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1]
          Length = 1186

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 163/1022 (15%), Positives = 328/1022 (32%), Gaps = 149/1022 (14%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            + + +  + I  D    P+ + +++ K +         +  K+    + + +    ++  
Sbjct: 220  IEMTDKVDKILAD----PFNEATELEKIM-----KDFLSFSKRLAQAETSLENGSFDQIR 270

Query: 67   SLLSSFFLTQKFTPQKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            + L     T+   P+K+    ++I  +   L +   + +++   +   F      + T  
Sbjct: 271  ASLQDCQFTEN--PRKSPKWDEDILDRYASLSQVRTELREQVKSLFAAFFVVDNEEQTAV 328

Query: 126  SLT---------LAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK-ID 174
                        LA+  L A +   K+K  +LD+ D+      +L     +  +  +   
Sbjct: 329  MKQSSMIIKAVCLAEKELIATFNSLKRKQNLLDYSDMEQLAYQILTSDTTAGHLARQFYQ 388

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +   IL+DE QD + +Q  +I+ +  +             LF VGD KQSIY F  A+P
Sbjct: 389  NKFTEILVDEYQDINKLQERIIQLMKCE----------HNNLFMVGDVKQSIYGFRQADP 438

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292
               L + +   +           I L  +FRST  +  +V+K+F+     +  G+   + 
Sbjct: 439  SLFLNKYQKFAED-----SSSKRIVLADNFRSTKPVTKIVNKLFNPLLTPDFGGIDYQNE 493

Query: 293  TTIRHRSSR--IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
              ++  +S          +L                           + S  S   + + 
Sbjct: 494  GQLKFGASYYPDNLPAASELLFYDK---------------------SEASDESNQIQLVI 532

Query: 351  YTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
              I  +I       +   G KR I+  DI +L R R                  I +  +
Sbjct: 533  NRIKQLIDEGFEVFDVKTGLKRPIEFSDIAILTRSRSQNLD----LLKQFAQNNIPLFVS 588

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            D         +  +M+  + + + + D+  V +L+SP+FNF E D+ KI   +    + Y
Sbjct: 589  DVANYFQTFELTIIMSYLKIVDNPDQDIPLVAVLRSPIFNFKEPDLAKI-RIKSPNMSFY 647

Query: 468  EYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
              +  + +       + +  +  + +L   A      +    I       +   S   G 
Sbjct: 648  SALTNYVSENDELSKRIKDFLNQLADLRDFALNHRISETIWSIYARTSLLEIVTSLPNGK 707

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVH 578
            +    L+         E   +  L + I+ + +                  N V++MT+H
Sbjct: 708  QRRINLENLYERANSYESAGFKGLYQFINFINRMRKNQKDLAQPLLSKEAENSVQLMTIH 767

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE PVVF +    Q           I     D  GI +     +  + + +     
Sbjct: 768  ASKGLEFPVVFYLGLEHQFQKSDLSGNYII---SGDSCGITVVRSDWRIDSLVKAMGNVT 824

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIIC-----------------------------KHSN 669
             +K   EE  R++YV +TRA  +LI+                                  
Sbjct: 825  KQKQLLEEEARIMYVAVTRARQKLILVTNFKDFAKDTDNLKASLANNGSLTLTSELAAQK 884

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH------------ 717
             ++         +  +         V+  +    +  D  +                   
Sbjct: 885  PADLLLPQLDLAHHFINQITDLQPEVESKQDFLVVTGDATVVELAKETNMDEKGEVSEFI 944

Query: 718  -------HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST--IDTKGKT 768
                   +    P +   T        ++ K    PI +++     +  +   +      
Sbjct: 945  VKNVKKLYEATYPFKDATTTTAYQSVSELKKAFNDPIDDELANSRFIKSANRYLQDIDTR 1004

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                          G  +H +LQ          +  I     ++ KL         +  I
Sbjct: 1005 PGFLFEDGFTGAEIGTAMHLILQFFDYQGNTSVEAEIERLV-QSGKLNSKIVPHLPIAEI 1063

Query: 829  TRLLENPMMTTAMSC--DSYSEVSVSG---------KINCPKKDIIISGRIDQISISQQN 877
            T  + +       +       EVS S            + P   I++ G +D   +    
Sbjct: 1064 TWFVNSDFAKKFWNEPGKLKREVSFSSLLPAADIFTPFSDPNAKILVHGTVDGYYLDDDG 1123

Query: 878  IFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
            I +F+YKT +    ++      I   +  QL +YE+ L      K     LI +   K+ 
Sbjct: 1124 IILFDYKTDYVNKNQLAQSINKIKDKYTGQLRLYERALNQLGQEKVKSKYLILLDAQKIV 1183

Query: 934  II 935
             +
Sbjct: 1184 EV 1185


>gi|199598402|ref|ZP_03211821.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
            rhamnosus HN001]
 gi|258508491|ref|YP_003171242.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus GG]
 gi|199590721|gb|EDY98808.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
            rhamnosus HN001]
 gi|257148418|emb|CAR87391.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus GG]
 gi|259649801|dbj|BAI41963.1| ATP-dependent exonuclease subunit A [Lactobacillus rhamnosus GG]
          Length = 1236

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 146/1043 (13%), Positives = 295/1043 (28%), Gaps = 133/1043 (12%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-----LKKAQTLQQASQTQC- 61
            +           +WP    ++  +   ++ + E  N         +    L         
Sbjct: 205  APEAWAATFTHQIWPRTKRKLMQVITTLTQADELANRLPNPVWHQQITADLNPLQSLLDN 264

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK--- 118
             +  +  +    +   F       ++ ++     LK + K+ +D   KI           
Sbjct: 265  PKPSYEAVRGVLVQHDFLAWSR-ASKGLDDDDKALKNEAKQQRDAAKKIWQDQLAPDFAL 323

Query: 119  -----------MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDV 165
                       +         +A          K    V D+ D+  N   +L+      
Sbjct: 324  TSEQITDLLHTVQPMMTMLTEVALTFLDALTAEKAVRHVQDYSDIAHNALRILQQKDPQT 383

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             A I        + +++DE QD S +Q  +   L                 F VGD KQS
Sbjct: 384  GAPIADNYRASFDEVMVDEYQDISPLQEAL---LAAVSTTDPGDR------FMVGDVKQS 434

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284
            IY F  A+P+  +++ +               I L  +FRST ++L   + +FS   +  
Sbjct: 435  IYGFRLADPQLFIQKYQAF-ASHPETPTAPERIILAENFRSTKNVLAFTNLIFSQIMDPE 493

Query: 285  -QGLSEDSTTTIRHRSSRIGQ--VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
               L+ D    +++ +   G        +     +  D         W++  +       
Sbjct: 494  VGDLAYDDNAALKYGALDYGDCHPAVKVMLYSKATSDDDDETNATSDWSATDEDDEPLDV 553

Query: 342  ASILARRIAYTISNMI----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            A+   + +   I  ++          +N + R I+ +DI +L R+     LI        
Sbjct: 554  ATGQTQMVIAEIQRLVQDPDAQLWDRANQQYRRIRYRDITLLTRQTTQNSLIQTQFAA-- 611

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                + +   D         +  ++AL + I + + D+  V +L+SP+   S D +  I 
Sbjct: 612  --AGVPLFVADTKNFFKTTELMVMLALLKIIDNPKQDIPLVAVLRSPIVGLSADQLALIR 669

Query: 458  TQRHETETVYEYIQKFANCGISKFQH--------VIKYIHELIHIAQFCSPHDFFTLILG 509
                +                +             +  ++    +A+          I  
Sbjct: 670  LAAKQVPYYDAVTAFLTGTPTTPLAKRTHATLTTFLDQLNHFRDLARENDLVTLLWAIYQ 729

Query: 510  AKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKR 563
                         G++    L   ++     E   +  L   I  +              
Sbjct: 730  ETGFLDYVGGTPGGSQRQANLLALVDRARTYESGGFKGLFAFIHFITLMQKQDQDLATPA 789

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                +++ V++MT+H +KGLE PVVF++ T    F+ +      I+              
Sbjct: 790  QVDPDNDAVKLMTIHKSKGLEFPVVFVLQTNKH-FNRRDQSGPAILTKNGIGIKWLDPQT 848

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
            + +             +  T  E  RLLYV +TRA  +L +   + +  +  S  +T   
Sbjct: 849  RVEYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGQQLTSADKTVAK 908

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP------------------------ 719
                +      +       + N  +WI      H                          
Sbjct: 909  WAKAAEGEQLTLAPQIRGAATNYLDWIGPALIRHPQVKGLTETTVKPALVADPTEFSIAI 968

Query: 720  -------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                        +          E         P +         + S I          
Sbjct: 969  ETHPQIKVGAATKTPAKTDAPAIELTGWFATQYPFQAATTTAGFQSVSEIKRAFDDPDTM 1028

Query: 773  LLSDNQ--------------------------TFNRGLIIHKLLQVIFTLPEHKR--KNF 804
             L                                  G   H LLQ++             
Sbjct: 1029 ELVSADRFLGPKPPLHDLGAPAFLTETYGGGNAAAIGTATHLLLQLVDLTKPITLNSLEA 1088

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINC----- 857
            +  +      +      +  L ++ R     +     +       EV  S  +       
Sbjct: 1089 LRHHLITTGVMPTEVAKRIDLTALVRFFATDLGQLLQAKPQQVQREVPFSMLLPANQLFE 1148

Query: 858  -----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                 P +D+++ G +D        + +F+YKT H    +   +   +  QL++Y + L 
Sbjct: 1149 ILQNDPGEDVLVHGIMDGYVTEADGVTLFDYKTDHEP--DPAKLVARYRGQLNLYAQALT 1206

Query: 913  DSYPNKSLVCLLIYVSEPKVFII 935
               P       L+ +    +  +
Sbjct: 1207 QLQPKPVTHRYLVLLRTGTIVDL 1229


>gi|218134064|ref|ZP_03462868.1| hypothetical protein BACPEC_01954 [Bacteroides pectinophilus ATCC
            43243]
 gi|217991439|gb|EEC57445.1| hypothetical protein BACPEC_01954 [Bacteroides pectinophilus ATCC
            43243]
          Length = 1022

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 157/1010 (15%), Positives = 316/1010 (31%), Gaps = 133/1010 (13%)

Query: 28   VSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                 + + +  +   P      IL   + +     T+ I +     +    T     + 
Sbjct: 25   REKFRRLLDICKDVAGPDMYIDNILSDLEGMDMLLNTENISQWMETAARIQFTDLSRKRG 84

Query: 83   NIITQE----INKKSPDLKEKLKKSQDEFIKIRDR---FNTYKMFKSTLASLTLAKYLNA 135
            + +  +    +       ++  +K +D    +                   +TLA     
Sbjct: 85   SGVDPDMKELVRNSRTKYRDSFRKLRDRLCSMSVEEYLRELSANGAPLRMLITLASEYMD 144

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKR----DVSAWIRYKIDQEINHILIDEVQDTSLI 191
              + AKK+  ++DF D+      LL K     D    +   +      ILIDE QD++++
Sbjct: 145  AVDAAKKEKNIIDFNDIEHMACSLLVKHENDTDEYTQLADDLASYYGEILIDEYQDSNML 204

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q  ++ +++          SS   LF VGD KQSIY F  A P+  L +           
Sbjct: 205  QEMILTAVSRGRL-----DSSRNNLFMVGDVKQSIYKFRLARPELFLDKYVKYPDA---- 255

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +IEL  +FRS + +L  V+ VF    + +    + T  +R         G     
Sbjct: 256  -DGCEVIELRNNFRSRSQVLYSVNSVFEKIMHRECGGIEYTEDVRLN------PGLEFAQ 308

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNG 366
                   D++ + +       +D     +      R IA  I  +I  DT         G
Sbjct: 309  RTDSGMMDNRTSIRLADLNIQYDEDDVNTPRECEGRLIASIIKEVIDEDTGMPVYDERLG 368

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R  +  DI+VL R          +      +  I           D   I+ ++ L  
Sbjct: 369  TYRKAEYGDIVVLTRSLDGWA---DVFADELMNAGIPAAAQSSSGYYDTYEIEQVLNLLA 425

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------- 479
             I +   D+    +  S       +D+  + +       +YE + ++ N           
Sbjct: 426  VIDNPAQDIPLAAVALSYFGTLDVNDLALVKSAYP-DARLYESMNRYLNSHADNQDEICA 484

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLR 538
            K  +++  I      + + + ++    I+          +   G+     LD   +    
Sbjct: 485  KINNLLTMIEGYRTKSVYLTINELIWKIIYDTGFYDYVGMMPAGSMRQQNLDMLCDKAES 544

Query: 539  NEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              + SY  L   +  +E+            +  +++N V+IM++H +KGLE P+V +   
Sbjct: 545  YARTSYHGLFNFLRYIEKIRKYNLDSQSGASDMSDNNAVQIMSIHKSKGLEFPIVIVAGI 604

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +  +     ++ +   +     I   + ++K    + S +   L      E  R+LYV
Sbjct: 605  AKKFNNMDARGRVVVDSDIGVGADIIDTVMRTKVSTPVKSAVEMKLVDDNLAEEMRILYV 664

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQ--------------RTWYDMVYDSFHNDE------ 693
             MTRA ++LI+       ++  +                 ++ DM+      D       
Sbjct: 665  AMTRAKEKLIMTGTLKNYDKMCAKWKTTDVSTFDGIQGCSSYMDMIMPVACGDAVNFDIS 724

Query: 694  --RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK-------------------Q 732
               + K    +  N D+      +         +   +I+                   +
Sbjct: 725  VTEINKEPDEDEYNGDKHDIMAHNAADIHEAAKKGAVSIEPYRYGYAVTMKTKLSVSEIK 784

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL--------LSDNQTFNRGL 784
            L + ++  +     +          + S    +G                 D     RG 
Sbjct: 785  LHEYEEQEEFTRDVLPELNAANNGKSGSESGIEGVQPAYEPCVPQFISKKEDVAPAERGT 844

Query: 785  IIHKLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN---PMMT 838
              H++++ +           + +I     +N       +  N    +     +       
Sbjct: 845  AFHRVMECLDYNRCGSVDDIRGYIDELVDRNMMTRRQADAVN-PQKVYDFCNSSIGARTA 903

Query: 839  TAMSCDS-YSEVSVSGKINC--------------------PKKDIIISGRIDQISISQQN 877
             A      Y E      I                       ++ ++I G ID        
Sbjct: 904  EAFRAGRLYREQPFVMGIPAGSIKIYQELADRYNVSYSLLDEETVLIQGVIDMYFEENGK 963

Query: 878  IFIFEYKTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            + + +YKT        E  +   +  QL +Y + L+ +     +   LIY
Sbjct: 964  VVLVDYKTDRVSGSNAEKILRDHYTIQLELYSEALERAL-GMEVSEKLIY 1012


>gi|114566673|ref|YP_753827.1| ATP-dependent exoDNAse subunit beta [Syntrophomonas wolfei subsp.
            wolfei str. Goettingen]
 gi|122318286|sp|Q0AXU8|ADDA_SYNWW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|114337608|gb|ABI68456.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Syntrophomonas wolfei
            subsp. wolfei str. Goettingen]
          Length = 1236

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 161/1052 (15%), Positives = 355/1052 (33%), Gaps = 153/1052 (14%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEE 64
               + + +          +N+ + LS + G P           K  + L +A+       
Sbjct: 209  ASELSQQIKIELSAAQDILNQALKLSNKAGGPRGYLEAIESDQKWVELLLKAADQGLPV- 267

Query: 65   RFSLLSSFFLTQKFTPQKNI------ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             +S L     T+     +++        + +  +S  +   +         +    +  +
Sbjct: 268  LYSCLQQLSFTRLGRVSRDVDENLKNQVKILRDESKKILNAINSLLGR-DPLEYLQDLNE 326

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            ++        + +     Y+E K++  ++DF DL      +L    V+           +
Sbjct: 327  IYSLMKYLGEIIQSFAEIYQEKKREKGIVDFNDLEHLALQILSNEAVARE----YRDYYS 382

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            ++ IDE QD++L+Q  ++  + ++             LF VGD KQSIY F  A+P   L
Sbjct: 383  YLFIDEYQDSNLVQETILNYIKKED-----------NLFMVGDVKQSIYRFRLADPSLFL 431

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIR 296
             +++         G     ++L  +FRS  +IL  V+ +F     E    +  D  + + 
Sbjct: 432  EKQKSYP---LQDGSVNRRVDLNKNFRSHPEILNAVNYIFRHLMSEELGEIDYDEKSYLY 488

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ-----------------------------E 327
               +   ++   ++ +    +   + N  +                             E
Sbjct: 489  PGLNTGQELKYQEIDKASSQEGKEKENTAKRVEICILENNPDLITKLEENETEEREIPGE 548

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLVRKRKDT 386
            +   + + + +  +  I A  IA  I  +I  D         R I+ +D+++L+R  +++
Sbjct: 549  AENDFIERIIEMDNTEIEALLIAQKIRQLIQEDIYDPELQCMRKIEYRDMVILLRATRNS 608

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
              I        +   I V  +      D L +   + L R I ++  D++ + +++SP+ 
Sbjct: 609  AGI---FMEQLSAEGIPVYADASSGYFDTLELNLFINLLRLIDNKRQDIALLSVMRSPIG 665

Query: 447  NFSEDDIFK-----ICTQRHETETVYEYIQKFANCGISKFQH----VIKYIHELIHIAQF 497
             FS DD  K     I  +  +  + YE ++ +        +      I+ + E    ++ 
Sbjct: 666  GFSIDDFIKIRTKLIPRREKQPYSFYEAMEFYMEDNNDDLKDRLVFFIQRLKEWELESRI 725

Query: 498  CSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
             +  +F   +               G +    L   L+     +++S+  L   I  +E+
Sbjct: 726  MALDEFMGKLFMDTGYYYYAGAMPGGGQRQANLRILLHRAREFQKSSFKGLFSFIKYIEK 785

Query: 557  Y-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                            N N VRIM++H +KGLE PVV L   G         + + +   
Sbjct: 786  IKSSGSDMGNACIIGENDNVVRIMSIHKSKGLEFPVVILGGLGKNFNIRDSNENVLLHRK 845

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT- 670
            L   P       ++         +   +K     E  R+LYV  TR  ++LI+   +   
Sbjct: 846  LGIGPRYINTQLRTYHDTIARLAIKNRIKLENLAEEMRILYVACTRPQEKLIMVGTTRQL 905

Query: 671  ------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                        S  +   +     ++     + +  + ++     + D  I +E  +  
Sbjct: 906  ESAWRRWSQPVNSYNQSRARSFLDWLIPIIMRHKKEGQYLREIAGGDWDREILWEDESRW 965

Query: 719  PENTPLEREETIKQLMDEQKIPKK------------------------LFSPIKNDINEP 754
                    + T +++  +++  +                            P +   N P
Sbjct: 966  KVKLISPWQLTAEEIRKKEEKYEWERLLEQGGYSCPSAESEEIIKRLNWKYPYQEAENIP 1025

Query: 755  YILNPSTIDTKGKTNLESLLS-------------------DNQTFNRGLIIHKLLQVIFT 795
              L+ S +       LE   +                        ++G I+H ++Q I  
Sbjct: 1026 AKLSVSQVSQISSGYLEDGAADTFLTRVPAFLSGEKDKKTRLSPADKGSIVHLVMQNI-D 1084

Query: 796  LPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-SEVSV 851
                 R++ I        +   L   +     +  I R  +  +    +       E   
Sbjct: 1085 YRRVSREDSINQQLGEMVEREILTSEQLAVVEVNKIWRFFQTKLGQRVLQAKWLFREAPF 1144

Query: 852  SGKINCPK--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            +  I   +        ++++I G ID      ++I + ++K+     +  E I   +  Q
Sbjct: 1145 NLLIAASEVFPALESQEELLIQGIIDLYFYEGEDIVLLDFKSDIVHHKSEEEILAPYRVQ 1204

Query: 904  LSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            L +Y++ L++   ++     L +    +   +
Sbjct: 1205 LKLYKRALENITDHRVKESYLYFFDLNRAIRV 1236


>gi|322376656|ref|ZP_08051149.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334]
 gi|321282463|gb|EFX59470.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334]
          Length = 1216

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 160/1019 (15%), Positives = 329/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++              +      +   +Q    +   + L+  
Sbjct: 240  EQIKQTLWDLESFFRYHLDNDAKEFPKAAYLENVQLILDEIGSLNQESDSQAYQTALARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VEISKEKNGRALTNASRKADLKPLTDAYNEERKTQFAKLGQLSDQITILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y E K++    +F D+   T ++L+K      +R       + +
Sbjct: 360  ELAKTFQAFMGDFVEAYRERKRQENTFEFADISHYTIEILEKFP---QVREAYQDRFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQD----SQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        + +         +        + +  E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAEFLLYDKDDTGEE--------EEVQAETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVSFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +       K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKIQENLYDKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  VTSQKNLIHTALVEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQILEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRKNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D      +             E     P          
Sbjct: 921  NTRLQARNFQDWIWAISKVFAKDHLNFSYRFVGEDQLTREDIGELENKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + ETIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSETIKEALEMLKEVEVYNTLHQAAIELPSVQTPSQIKKFYEPVMDMEGVEIASRAQSVD 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I       R    +   T           
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRID---LSHRPTLASLTETLKQVQTSPAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLAKILAFFDTALGQEILANTDHLYREQPFSMLKRDPKSQEDFVVRGILDGYLLYED 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   +   +   + +QLS+Y + L  +Y  +++   LI + + +V ++
Sbjct: 1158 KIVLFDYKTDRY--DKPSQLIDRYRSQLSLYGEALSRAYSIENIEKYLILLGKNEVQVV 1214


>gi|307267167|ref|ZP_07548675.1| recombination helicase AddA [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917818|gb|EFN48084.1| recombination helicase AddA [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 859

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 135/860 (15%), Positives = 281/860 (32%), Gaps = 119/860 (13%)

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            +       ++   I +DE QD++LIQ  ++ ++  +              F VGD KQS
Sbjct: 12  PSEAALMYREKFQEIFVDEYQDSNLIQEVILSTIAREDT---------PNRFMVGDVKQS 62

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY F  A P     +      +  +       I L  +FRS   I+  V+ +F    +  
Sbjct: 63  IYRFRQANPHIFFEKYNTYSSKEEDKN---KKILLYKNFRSRPQIIDAVNFIFKKIMSKN 119

Query: 286 GLSEDSTTTIRHR--------SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
               D T   +                 G V++      + + +   ++E      +   
Sbjct: 120 VGEIDYTEEEKLNCGADFGTPPLDAIVGGPVEIHLI---EKNDETPEEEELEVYGEEEEE 176

Query: 338 QESSASILARRIAYTISNMIGTDT-------IFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
              +  + AR +A  I  ++  +          +    R ++ +DI++L+R    T    
Sbjct: 177 IIDNIQVEARVVAQRIKELVTQNEKNTFMVYDKNLKNYRPVEYRDIVILLRA---TERWA 233

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
            +      +  I    +      +   IK +++L + I +   D+  + +L+SP+F+F+ 
Sbjct: 234 PVFLEEFINVGIPAFADTGTGYFETTEIKTIISLLQVIDNPMQDIPLLAVLRSPIFSFTP 293

Query: 451 DDIFKICTQRHETETVYEYIQ--KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +++  I  +           +  +       K +  ++ + +    A +    +F   + 
Sbjct: 294 EELIDIRLEEPNRAIYEALKKVSQREAELGQKAKSFLESLKKWQEKAIYMPVDEFLWYLY 353

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562
                         G +    L        + E+ S+  L   I+ +             
Sbjct: 354 QDTGYYAYVGAMPQGVQRQANLRILFERAKQYEETSFKGLFNFINFINRLKVSSGDMGSA 413

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +    N N VRIM++H +KGLE PVV +   G Q       + +     L   P    + 
Sbjct: 414 KIVGENENVVRIMSIHKSKGLEFPVVIVAGLGKQFNLKDLSQSVLYHHLLGLGPEFVDFK 473

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---- 678
            +    + +   +   +K  +  E  R+LYV +TRA ++LI+        EK        
Sbjct: 474 RRISYPSIVKEAIKNKIKLESLSEEMRVLYVALTRAKEKLILVGSVKDIKEKVKKWCNIA 533

Query: 679 --------------RTWYDMVYDSFHNDERVKKIKLTNSIN------------------- 705
                         +++ D +  +      +K ++    +                    
Sbjct: 534 MLESKVPEYEILKGKSYIDWIGPAVIKHADLKPLRDFAQVQYVAVEEDSSQWQVRIWNKK 593

Query: 706 ---------KDEWIAYEWSTHHPENTPLER--EETIKQLMDEQKIPKKLFSPIKNDINEP 754
                    ++E    +   +   ++P     +E  ++L       K    P K  + E 
Sbjct: 594 DVIFDKKQVEEETNLLQRLENLDLDSPSSEFYDEVTRRLNYVYPHEKACHLPAKLSVTEI 653

Query: 755 YILNPSTI-----------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHK 800
             +    +                              +G+ +H ++Q +     L    
Sbjct: 654 KRILNEEVIDEDTTSIFEKTVLKIPAFLEKKKGLTAAEKGIAMHLVMQKLDLNGDLSVEG 713

Query: 801 RKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKI--- 855
            K  I +   +   +    + K + +  I       +    + S +   EV    KI   
Sbjct: 714 IKKQIKNMVDRE--ILTEAQAKEIDIRRIEEFFRASLGRRMLSSQNVKREVPFHIKIKST 771

Query: 856 --------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                       + I + G ID     +  I + +YKT +   + +E I   +  Q+ +Y
Sbjct: 772 EVYKDLPEEYENEFIAVQGIIDCFFEEEGKIILIDYKTDYVTEEMMEEIKEKYKVQIDLY 831

Query: 908 EKILKDSYPNKSLVCLLIYV 927
            K L+     K +    IY+
Sbjct: 832 AKALEKI-TGKRVKEKYIYL 850


>gi|161507624|ref|YP_001577578.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC
            4571]
 gi|251764556|sp|A8YVK0|ADDA_LACH4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|160348613|gb|ABX27287.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC
            4571]
          Length = 1204

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 173/995 (17%), Positives = 323/995 (32%), Gaps = 123/995 (12%)

Query: 33   KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92
            K ++   E+           +Q   +    +++  LL S   T  F   K    +++ + 
Sbjct: 240  KELAKVKESFTLFAQNLNNFVQAVKEDDDYDKQRELLRSCVFTINFRKSKKW-DEDLLEF 298

Query: 93   SPDLKEKLKKSQDEFIKI---------RDRFNTYKMFKSTLASLTLAK-YLNAHYEEAKK 142
              +++    +++ +             +++    +  +  + +++ A+  L   + + K+
Sbjct: 299  YNEIQSLKDEAKSQVFDTFTSFYAVTEKEQIKIMQESQKIVTAISTAEIKLIERFNQLKR 358

Query: 143  KNCVLDFEDLIINTNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
               +LD+ D+      +L +    S   R     +   ILIDE QD + +Q  +I+ +  
Sbjct: 359  NENLLDYSDMEQLAYQILSQDTSSSQMARDFYQNKFKEILIDEYQDINALQERIIQQIKS 418

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +            TLF VGD KQSIY F  AEP   L++     +           I L 
Sbjct: 419  E---------KKNTLFMVGDVKQSIYGFRQAEPSLFLQKYHQFAEDENEHE---ERILLS 466

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             +FRST  +   V+ VF    +      D               G +    +   +   Q
Sbjct: 467  DNFRSTEPVTQTVNAVFKSILSTDFGGIDYQKE-----------GQLIFGAKYYPKSLPQ 515

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILV 378
             +          +   +        + +   I  +        +   GK R ++  DI +
Sbjct: 516  ASEVIVHEKKNNNEKSENEIDFSEIQMVLARIKQLEDEHVQIFDSNTGKMRDMEYSDIAI 575

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            L R R D                I +   D         +  +M   + I + + D+  V
Sbjct: 576  LTRSRSD----NLEIMQEFAKQDIPLFVTDAENYFQTFELTVMMNYLKIIDNPDQDIPLV 631

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--ISKFQHVIKYIHELIHIAQ 496
             +L+SPLFNF E ++ KI  +   +                  K ++ +  + EL   A 
Sbjct: 632  TVLRSPLFNFDEKELAKIRIKSKNSNFYSALTSYVGTNDVLSKKCKNFLNQLAELRSFAT 691

Query: 497  FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                 +    I       +   +   G +    L+         E   +  L + I+ ++
Sbjct: 692  THRISELIWSIYERTNLLEIMTALPNGEQRRVNLEALYERATSYESAGFKGLYQFINFID 751

Query: 556  QY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +                  N VR+MT+H +KGLE P+VF V                I  
Sbjct: 752  RMRRSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHHYQMRDLNGNYII-- 809

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              +D  GI +     +  + + +      K+   EE  R+LYV +TRA  +LI+     +
Sbjct: 810  -NSDSMGITLREQNYRVDSLVKAMGNITKKQQLLEEEARILYVALTRAKQKLILVGDVPS 868

Query: 671  SNEKKSNQRT---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----------- 716
             N+K     T       +              +  S+  D  +A + +            
Sbjct: 869  FNKKVKEWSTELNHAGQLPLINKLSATSPLSFIGPSLRFDRHVAIKLNDITKSIDQSQKI 928

Query: 717  -------------HHPENTPLEREETIKQLMDEQKIPK--KLFSPIKNDINEPYILNPST 761
                            E+T  + E T K  +  Q + K  +   P ++          S 
Sbjct: 929  LFIDYQDEDTKFIKKDEDTDNQNENTRKSALLTQTVNKLYQFNYPFRDASETTAYQAVSE 988

Query: 762  IDTKGKTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF-T 795
            I       +++ L ++                              G   H +LQ    T
Sbjct: 989  IKKAFNDPIDAELENSHLLTSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHLILQYYDYT 1048

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVS- 852
                   +   +   +  KL P          I   +             +   EV  S 
Sbjct: 1049 NDSADNLDQEIATLIEQKKLNPDIVSSLNKDQIDWFVHGDFAKDFWKEPTNLKREVDFSS 1108

Query: 853  --------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTH 900
                       + P   I++ G ID   +++  I +F+YKT H       + IE I   +
Sbjct: 1109 LLSARTLFKDFSDPDAKILVHGTIDGYFVAKNGIILFDYKTDHVNKTNIDKSIELIKEKY 1168

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              QL +YE+ L +    K +   LI +   +V  +
Sbjct: 1169 TGQLRLYEQALNEFSEKKVIGKYLILLDAKQVVEV 1203


>gi|116334819|ref|YP_796346.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
            brevis ATCC 367]
 gi|122268502|sp|Q03NA7|ADDA_LACBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|116100166|gb|ABJ65315.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus brevis
            ATCC 367]
          Length = 1262

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 160/1042 (15%), Positives = 321/1042 (30%), Gaps = 144/1042 (13%)

Query: 29   SDINKYVSLSMETG-------NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
            +D+    +L+ + G          +L+    +QQ           + +  F   +    +
Sbjct: 234  ADLTSAQALANQAGLDKQAAHVTAVLENVAAVQQLVTGDSWNALRAAIQDFAWGRMPAVR 293

Query: 82   KN-----IITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TYKMFKSTLASLTLAKYL 133
            K      I  +         +++L   +  ++   ++       +  +       +    
Sbjct: 294  KTNEDYPIYNELKTTYYDPARKQLDSLKKTYLIQDEQQAMTTIRRSGELVGELSRVVTAF 353

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               Y + K++  VLDF D+      +L +  D S  +  ++  +   I++DE QDT+ +Q
Sbjct: 354  RTAYRQEKQRRHVLDFADVEHAALAILTQDSDQSRQVAAQLRHQFAEIMVDEYQDTNGLQ 413

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
              ++ ++ E    G         LF VGD KQSIY F  A+P   + +       A    
Sbjct: 414  EAILTAIAEPAPQG--------NLFMVGDVKQSIYRFRQADPTLFMTKTDQYAADAAA-- 463

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LW 311
                +I L  +FRS  ++    + +F    + +    D T   + +        TV    
Sbjct: 464  --GELIVLAENFRSMKNVDDFTNLIFKQLMDRELGEIDYTGAAQLKFGASYYPDTVTSTA 521

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSL-PQESSASILARRIAYTISNMIGTDTIFSN---GK 367
            E +V   +       ++ +   D+    ++        +   I  +I   T   +    +
Sbjct: 522  ELLVYLTEDAPESAGDADSEAMDATFQVDNKHQGEVLMVGQKIQQLIADQTPIYDREAKQ 581

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R +   DI +L   R +  +IT   R L     I VV ND         I+ +MAL + 
Sbjct: 582  VRPMTYGDITLLTPTRTNNLIITDELRRL----GIPVVVNDARNYFKTTEIQIMMALLQI 637

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ-----------KFANC 476
            I +   D+    +L+SP+   +E+++  +   +   +     +             F   
Sbjct: 638  IDNPYQDIPLAAVLRSPIVGLNENELALLRINQRTGDYYQAVLHFQRSFVPNQASDFQQA 697

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNF 535
               K  H ++ + E   IAQ          I               G +    L      
Sbjct: 698  VYQKVSHFLEQLQEFRDIAQQDELVTLIWRIYQETGFLDYVGGMPAGEQRQANLHALYER 757

Query: 536  TLRNEQNSYSSLQELISELEQ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                EQ+S+  L + +  +E+              A  + V +MT+H +KGLE PVVF++
Sbjct: 758  AKSYEQSSFKGLFQFVRFVERLQERDDDLAGAPVQAADDAVSVMTIHGSKGLEFPVVFIM 817

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            D   Q           +               + K+ +       + + +++  E  R L
Sbjct: 818  DASRQFNKQDQQGNYVMSGKTGIGIDYLDPDSRVKAPSLQKLVTAQAISRASLAEEMRKL 877

Query: 652  YVGMTRASDQLIICKHSNTSN---------------------EKKSNQRTWYDMVYDSFH 690
            YV +TRA  ++ I     T                        +K+    + D +     
Sbjct: 878  YVALTRAESRVYIVGSHKTQEAAISAWEQAYQSPNLVLNATLREKNTLANYLDWIGMCLV 937

Query: 691  NDE-----------------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
             D                         V  +   +                  +    + 
Sbjct: 938  RDPKFAAELRQGTTTFSGLAGDPATFAVHFVTAHDLGPTQGVNETAVDWLQAASETAAKV 997

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN------------------ 769
             T     ++         P +         + S      +                    
Sbjct: 998  TTPPVDTEQLHQIMDFRYPHQAATATTAYQSVSEAKRLFEDPDNATIGEYQASATGQVGG 1057

Query: 770  ------------LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKL 815
                            + +      G   H +LQ +     P   R   +      +  L
Sbjct: 1058 HRFVTHDFARPDFLQTVREPLATEIGSATHLVLQQLDVTVTPTLDRVQGVIDQLVADQVL 1117

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSG---------KINCPKKDIII 864
                  +     I R   + +    ++     + EV  S                  +++
Sbjct: 1118 TAEVAQRIQPELILRFFSSSVGQQVLAAPDQLHREVPFSLLMPARSLFQDFQETDSQVLV 1177

Query: 865  SGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
             G ID    +   + +F+YKT H         IE I   +  Q+++Y   LK       +
Sbjct: 1178 HGIIDGYLTTPAGVILFDYKTDHVNAQNQAASIEKIVERYGGQVNLYAAALKQMTGQPIV 1237

Query: 921  VCLLIYVSEPKVFIIPQNKLNK 942
               L  ++  ++  +P+ ++ +
Sbjct: 1238 GQYLYLLAIGELVAVPEQQVRR 1259


>gi|168177782|ref|ZP_02612446.1| recombination helicase AddA [Clostridium botulinum NCTC 2916]
 gi|182671018|gb|EDT82992.1| recombination helicase AddA [Clostridium botulinum NCTC 2916]
          Length = 1279

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 158/992 (15%), Positives = 321/992 (32%), Gaps = 150/992 (15%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    +     +++  +      +L+ + + +     +     ++ S  A   L    + 
Sbjct: 288  KDADKEAKERVKKLRDRVKKRIIELRITLNSYENEFTKKEFIFLYPSMKALSNLVILFDK 347

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSL 190
             YE  K++  ++DF D+      +L         + + I     ++   +LIDE QD++L
Sbjct: 348  KYEAKKRERDLIDFNDIEHLCLSILTDKNSEGHIIPSDIALDYRKKFAEVLIDEYQDSNL 407

Query: 191  IQWEVIRSLTEDFFVGKNTHS------------------SPRTLFAVGDEKQSIYSFHGA 232
            +Q  ++  ++         +                        F VGD KQSIY F  A
Sbjct: 408  VQEVIMSMVSRVKGYWSFYNGQLMFNEEEINLEEPQICLDIPNRFMVGDVKQSIYRFRQA 467

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P+  L +           G K   ++L  +FRS  +++  V+ +F    +      D T
Sbjct: 468  KPEIFLDKYNEYS---EEEGTKNRKVKLFKNFRSRKEVINGVNYLFKQIMSKTIGELDYT 524

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                 +              ++          ++       D      +  +  R +A  
Sbjct: 525  EEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDEEEALDNIQLEGRLVAKK 584

Query: 353  ISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            I  ++G +            GK R +Q +DI++L+R   +   +            I V 
Sbjct: 585  IQKLVGNNLEGGLKVFDKKLGKYRNLQYRDIVILMRATSNWAPV---FVEELAKEGIPVF 641

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-------- 457
             +      D   IK +++L + I +   D+  + +L+SP+ +F++D++  I         
Sbjct: 642  ADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASFTDDELIDIRMVNKNITF 701

Query: 458  ----------TQRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQ 496
                       +  + ++ Y +  +  N      +             I+ +      + 
Sbjct: 702  YECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKNKICSFIEKLKLWREKSI 761

Query: 497  FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554
                 +F   +           + + G +    L        +  + SY  L   I+ + 
Sbjct: 762  HIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQYAKTSYKGLFNFINFIN 821

Query: 555  ----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                        +    N N VRIM++H +KGLE PVV L  TG         K +    
Sbjct: 822  KLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGTGKNFNMTDLNKNILFHR 881

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             L   P       +    + + + +   ++  T  E  R+LYV +TRA ++LII    N 
Sbjct: 882  DLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLIITGLINN 941

Query: 671  SNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKLTN---------S 703
             ++   +                   +T+ D +  +    +     +             
Sbjct: 942  MDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDAVSFREELKMTSELSNIV 1001

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI------------ 751
             +K +W    W+        +E +E       ++ +     S  K +I            
Sbjct: 1002 DDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESNYKEEIYKRLSFKYKYDN 1061

Query: 752  --NEPYILNPSTID------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
              + P  L+ S +                      K              RG IIH  +Q
Sbjct: 1062 ASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEKKKISPSERGTIIHLFMQ 1121

Query: 792  VIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYS 847
             +       E   K  I     +    +   +  +    I +     +    + S +   
Sbjct: 1122 HLDLKKAENEEDIKEQINRLIEREFITYEQSKVISPYK-ILKFCRGELGKRILNSNNVNK 1180

Query: 848  EVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
            E+  S +I                + +II G ID     +  + + +YKT +    +IE 
Sbjct: 1181 EMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGLVLLDYKTDYV--NDIEE 1238

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            I   +  Q+  YE+ L      K++    +Y+
Sbjct: 1239 IKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269


>gi|302332580|gb|ADL22773.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            JKD6159]
          Length = 1217

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 157/1024 (15%), Positives = 315/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    ++ D +  + + +   
Sbjct: 456  TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAFRAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSESIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          +     +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQFPEGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGKQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|291544540|emb|CBL17649.1| recombination helicase AddA, Firmicutes type [Ruminococcus sp. 18P13]
          Length = 1187

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 146/1012 (14%), Positives = 314/1012 (31%), Gaps = 120/1012 (11%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
             ++     + L            + ++  +     T  ++   LQ+A   +  +   +LL
Sbjct: 213  GQTIAACIQRLDEAIRLSAEVNQEKLTAFL----ITEQEQLTLLQKACTEKDPDRCAALL 268

Query: 70   SSFFL-------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            ++               P+K  + + +      + + L+      +  R         + 
Sbjct: 269  NALSFASFPRVTKTCTDPEKRELAKALRDDGKKIMKDLQTEAVSLLCHRQEDLDAHC-RL 327

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY-----KIDQEI 177
                    + L+    E K     + F D       LL        I+      ++ +  
Sbjct: 328  IPVLHAFLQQLDDRLWEMKCDKNAIGFTDAEQLALSLLGTCQADGTIQQTALAKELSEFY 387

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              I+IDE QDT+  Q  + + ++       +  ++   LF VGD KQ+IY F  A P+  
Sbjct: 388  QIIMIDEFQDTNNKQDLIFKLISHK----GSAVANGDNLFMVGDVKQAIYRFRLANPRNF 443

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTI 295
            +R  +  +        + + I L  +FRS+ +++ +V+ +FS         ++  S   +
Sbjct: 444  IRTMQAFKPYTGKDDGENACILLNRNFRSSPEVIAMVNFLFSTLMTPQVGEVAYTSEEAL 503

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
               ++        ++      + D+                         A  IA  I+ 
Sbjct: 504  HQGAAFAETPRNTEIALLEDGEQDTNP----------------------EAAYIAKRIAR 541

Query: 356  MIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            M+      S+G    R    +D  +L+R +    +             ++    +     
Sbjct: 542  MLREGAPVSDGANHTRPCTPRDFCILMRNKAKGSVYVQALAE----QGVAAYSEEAAAYL 597

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----------- 462
                I  L+ L R I +   D +   +L SP+F F  D++ ++     +           
Sbjct: 598  KAREITLLLNLLRIIDNPPQDTAMAAVLLSPMFRFDMDELTQLRLLAPKVSLYAAICRGI 657

Query: 463  -TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520
                  +           K +     +      A   +P      I  +           
Sbjct: 658  GETGAADAQPLLTGAMYEKTKGFYNALQAFRMYAMQDTPERLIRRIYESTDFLSVMQRYS 717

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-----TIKRAHSANHNEVRIM 575
             G +    L   L +    E  S   L   +  + Q            A S + + V I 
Sbjct: 718  DGAKKQANLRLMLTYARNYETASGGGLSGFLHYIAQVSARGKDFQPGTAVSGSEDVVAIK 777

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P VFL ++ +             +        +      ++ +    + +
Sbjct: 778  TIHKSKGLEFPFVFLAESETDFNHQDDRAAFQFLQEYGFGFRLQDPTVYTRYKTLPYAAI 837

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK-------------------S 676
                +   + E  RLLYV +TRA D+L +    N + +K+                   +
Sbjct: 838  SMQRESYAKSEELRLLYVALTRAKDKLFLPLRLNDARKKQAFRLGAAIAASGRVTPSIAA 897

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINK-DEWIAYEWSTHHPENTPLEREETIKQLMD 735
            +     D ++ +    E    ++    +       A      HPE++    E+       
Sbjct: 898  SANCMADWLWMALLTAENAAPLREACQMPPCPLQPAVPMEILHPEDSSDATEQDTPTPAA 957

Query: 736  EQKIPKKLFSPIKNDINE---------PYILNPSTIDTKG--------KTNLESLLSDNQ 778
              K    + + ++              P   + S +            +    +  +   
Sbjct: 958  YPKPDPAMVTALRMQFAAVYDDRLMGIPSKTSVSALSKDEDAVNLALRRPRFMAEETALT 1017

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               +G  +H  LQ        +  +      T++  L   +     L  I     +P+  
Sbjct: 1018 GAEKGTALHAFLQYADFAVAAQDPDAERQRLTEDGHLTRRQADSLDLNRIRAFFASPLYE 1077

Query: 839  TA-MSCDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
                +   + E     +I+             + ++SG +D +      + + +YKT + 
Sbjct: 1078 RIRQAEHVWRERKFLVRISDLQLLDQPQYTGTNAMLSGIMDLVFEEPDGLVLVDYKTDYV 1137

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFIIPQNK 939
                 E +   +  QL +Y + L   +  K +   +L      +   +P+  
Sbjct: 1138 QGG--EMLTERYQRQLLLYRRTLALLH-QKPVKETVLYSFHLNRAIPLPEEA 1186


>gi|15923957|ref|NP_371491.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|15926556|ref|NP_374089.1| hypothetical protein SA0828 [Staphylococcus aureus subsp. aureus
            N315]
 gi|148267401|ref|YP_001246344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus JH9]
 gi|150393454|ref|YP_001316129.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus JH1]
 gi|156979293|ref|YP_001441552.1| hypothetical protein SAHV_0962 [Staphylococcus aureus subsp. aureus
            Mu3]
 gi|253316128|ref|ZP_04839341.1| hypothetical protein SauraC_08287 [Staphylococcus aureus subsp.
            aureus str. CF-Marseille]
 gi|255005757|ref|ZP_05144358.2| hypothetical protein SauraM_04790 [Staphylococcus aureus subsp.
            aureus Mu50-omega]
 gi|257795298|ref|ZP_05644277.1| recombination helicase AddA [Staphylococcus aureus A9781]
 gi|258406947|ref|ZP_05680100.1| recombination helicase AddA [Staphylococcus aureus A9763]
 gi|258421915|ref|ZP_05684836.1| recombination helicase AddA [Staphylococcus aureus A9719]
 gi|258435312|ref|ZP_05689051.1| recombination helicase AddA [Staphylococcus aureus A9299]
 gi|258441524|ref|ZP_05690884.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115]
 gi|258447223|ref|ZP_05695372.1| recombination helicase AddA [Staphylococcus aureus A6300]
 gi|258449983|ref|ZP_05698081.1| recombination helicase AddA [Staphylococcus aureus A6224]
 gi|269202582|ref|YP_003281851.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98]
 gi|282893994|ref|ZP_06302225.1| recombination helicase AddA [Staphylococcus aureus A8117]
 gi|282927190|ref|ZP_06334812.1| recombination helicase AddA [Staphylococcus aureus A10102]
 gi|295405773|ref|ZP_06815582.1| recombination helicase AddA [Staphylococcus aureus A8819]
 gi|296276179|ref|ZP_06858686.1| exonuclease RexA [Staphylococcus aureus subsp. aureus MR1]
 gi|297245364|ref|ZP_06929235.1| recombination helicase AddA [Staphylococcus aureus A8796]
 gi|81705953|sp|Q7A6H4|ADDA_STAAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|81781869|sp|Q99VC3|ADDA_STAAM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|251764537|sp|A6U074|ADDA_STAA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|251764554|sp|A5IRE5|ADDA_STAA9 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|251764555|sp|A7X0I2|ADDA_STAA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|13700771|dbj|BAB42067.1| SA0828 [Staphylococcus aureus subsp. aureus N315]
 gi|14246736|dbj|BAB57129.1| similar to ATP-dependent nuclease subunit A [Staphylococcus aureus
            subsp. aureus Mu50]
 gi|147740470|gb|ABQ48768.1| DNA helicase/exodeoxyribonuclease V, subunit A [Staphylococcus aureus
            subsp. aureus JH9]
 gi|149945906|gb|ABR51842.1| Recombination helicase AddA [Staphylococcus aureus subsp. aureus JH1]
 gi|156721428|dbj|BAF77845.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789270|gb|EEV27610.1| recombination helicase AddA [Staphylococcus aureus A9781]
 gi|257841486|gb|EEV65927.1| recombination helicase AddA [Staphylococcus aureus A9763]
 gi|257842248|gb|EEV66676.1| recombination helicase AddA [Staphylococcus aureus A9719]
 gi|257848973|gb|EEV72956.1| recombination helicase AddA [Staphylococcus aureus A9299]
 gi|257852314|gb|EEV76240.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115]
 gi|257853971|gb|EEV76925.1| recombination helicase AddA [Staphylococcus aureus A6300]
 gi|257856903|gb|EEV79806.1| recombination helicase AddA [Staphylococcus aureus A6224]
 gi|262074872|gb|ACY10845.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98]
 gi|282590879|gb|EFB95954.1| recombination helicase AddA [Staphylococcus aureus A10102]
 gi|282763480|gb|EFC03609.1| recombination helicase AddA [Staphylococcus aureus A8117]
 gi|285816646|gb|ADC37133.1| ATP-dependent nuclease, subunit A [Staphylococcus aureus 04-02981]
 gi|294969208|gb|EFG45228.1| recombination helicase AddA [Staphylococcus aureus A8819]
 gi|297177667|gb|EFH36917.1| recombination helicase AddA [Staphylococcus aureus A8796]
 gi|312829364|emb|CBX34206.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            ECT-R 2]
 gi|315130452|gb|EFT86439.1| hypothetical protein CGSSa03_03488 [Staphylococcus aureus subsp.
            aureus CGS03]
 gi|329728233|gb|EGG64672.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus aureus
            subsp. aureus 21172]
          Length = 1217

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 160/1009 (15%), Positives = 311/1009 (30%), Gaps = 149/1009 (14%)

Query: 28   VSDINKYVSLSMETGN-----PTILKKAQTL--QQASQTQCIEERFSLLSSFFLTQKFTP 80
            + D  + +   +E G       T  +    L    A   +  E     L    L  ++  
Sbjct: 252  IEDERRLMGRVLEGGFIDIPYLTDHEFGARLPNVTAKIKEANEMMVDALEDAKL--QYKK 309

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
             K++I +  N       + LK    +                      + K + + +   
Sbjct: 310  YKSLIDKVKNDYFSREADDLKADMQQL------------APRVKYLARIVKDVMSEFNRK 357

Query: 141  KKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K+   +LDF D       +L   D   + I     Q    IL+DE QDT+ +Q +++  +
Sbjct: 358  KRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCI 417

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                   K        LF VGD KQSIY F  A+P   + + +         G     I+
Sbjct: 418  -------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTG---RRID 467

Query: 260  LPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            L  +FRS  ++L+  + +F     E    +  D    + + +        V L   V + 
Sbjct: 468  LSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEAD 527

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKD 375
             +                    + +   A  I   + +++    ++    G  R    KD
Sbjct: 528  QEH----------------SDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKD 571

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I++L R            +    +  I    N R    +   ++ +++  R I +   D+
Sbjct: 572  IVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDI 627

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIH 489
              V +++S ++ F ED++ +I       +  Y+ I  + N          K +  +  I 
Sbjct: 628  YLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQ 687

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQ 548
                 ++    +             Q F    G       L    N  +  E +S+  L 
Sbjct: 688  SYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLY 747

Query: 549  ELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + I  +++     K     N      N VR+MT+H++KGLE P V               
Sbjct: 748  QFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLK 807

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            + + +               +    +          +K    E  RL+YV +TRA +QL 
Sbjct: 808  QPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLY 867

Query: 664  ICKHSNTSNE---------------------KKSNQRTWYDMVYDSFHN--DERVKKIKL 700
            +                                +     Y ++         + +K  K 
Sbjct: 868  LIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKD 927

Query: 701  TNSINKDEWIAYEWSTHHPENTPLER----------------EETIKQLMDEQKIPKKLF 744
               +          S  + E+   E                 +   + +  + K      
Sbjct: 928  IAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNGNEDVKAQIKHQLDYQ 987

Query: 745  SPIKNDINEPYILNPSTI-----------------------DTKGKTNLESLLSDNQTFN 781
             P  ND  +P   + S +                        T  +    S     +   
Sbjct: 988  YPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANE 1047

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLENPMMT 838
             G ++H ++Q +    E   +  +  Y     +  +  A   K++    I   + + + +
Sbjct: 1048 IGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYS 1107

Query: 839  TAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---H 887
                +   Y E+          ++    +D+ II G ID I +     +  +YKT     
Sbjct: 1108 IIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNR 1167

Query: 888  HVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
                  E     +   +  Q+  Y+  L+    NK +   L +     +
Sbjct: 1168 RRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFKFGTL 1215


>gi|323443832|gb|EGB01444.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O46]
          Length = 1217

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 157/1024 (15%), Positives = 317/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    ++ D +  + + +   
Sbjct: 456  TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESEHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  IH     ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIHSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    +          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQVEDSSRPNVNISMIYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKNQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPRGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|251796231|ref|YP_003010962.1| recombination helicase AddA [Paenibacillus sp. JDR-2]
 gi|247543857|gb|ACT00876.1| recombination helicase AddA [Paenibacillus sp. JDR-2]
          Length = 1277

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 157/1080 (14%), Positives = 328/1080 (30%), Gaps = 168/1080 (15%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQAS 57
            GL  +     +  D+        S +N+ + L+ E   P          L     L +  
Sbjct: 216  GLRSSPWVASLRADVELALSGAASLLNQAMQLTREPAGPAPYAATFEEDLAIVGGLAETV 275

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT- 116
            +    E  F    +    +    + +   + + +++ +L+++ KK            +  
Sbjct: 276  RMHPWEMWFESFQAVQFGKLKAMRGDDYDKTMQEQAKELRDQAKKLISSLADELFGRSAE 335

Query: 117  ------YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI- 169
                   ++     A   L       YE AK+   +LDF DL      +L+  + +  + 
Sbjct: 336  EFAWELQELAPLMAALSELVIEFGQRYEAAKRSKGLLDFGDLEHYCLRILRAPESTPELT 395

Query: 170  -----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                   +  ++ + IL+DE QDT+++Q  ++  +          +      F VGD KQ
Sbjct: 396  TPSPAATEYQRQFDEILLDEYQDTNMVQEAIVSLIA---------NPHAGNRFMVGDVKQ 446

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            SIY F  AEP   + + +         G     I+L  +FRS  +++  V+ VF      
Sbjct: 447  SIYRFRLAEPNLFMSKYKNY----GAPGGDGLRIDLARNFRSRLEVVDGVNDVFRAIMRE 502

Query: 285  QGLSEDSTTTIRHRSSR----IGQVGT--VQLWEQVVSQHDSQCNPQ----------QES 328
                 D                   G   V+L     +   ++ +            ++ 
Sbjct: 503  TVAEMDYDKRAELVCGASYPEPDLPGRFAVELAVIDKAGSSNEEDGAVSPADSDDESEQG 562

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR---VIQAKDILVLVRKRKD 385
                 +S  +  +A + AR IA  I +++       +GKKR    ++ +DI++L+R    
Sbjct: 563  AGPAAESAEELQTAQLEARLIARQIRSLLDEGFRVYDGKKRESRPMEWRDIVILLRA--- 619

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
            T     +         I           D   ++ +++L R I +   D+     L+SP+
Sbjct: 620  TQAWAPVIIEELQGAGIPAYAELSSGYFDATEVETILSLLRVIDNPYQDIPLAGTLRSPI 679

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSP 500
            F  + +++  I     +       +Q        +    K    ++ +    + A+  S 
Sbjct: 680  FGLNAEELALIRIGAMQDTYYDAVLQAAGDLLLPDELRRKLSLFLERLDRWRNDARQGSL 739

Query: 501  HDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-- 557
             D    I               G +    L    +   + E  S+  L   +  +E+   
Sbjct: 740  ADLIWSIYRETGYYDFAGGLPGGVQRQANLRALHDRARQYEATSFRGLFRFLRFVERMRD 799

Query: 558  ---PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                    RA     N VRIM++H +KGLE PVVF+   G                 L  
Sbjct: 800  SGGDLGTARALGEQENVVRIMSIHKSKGLEFPVVFVAGLGKNFNQQDLRSAFLKHKQLGF 859

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             P       +          + + ++     E  R+LYV +TR  +++ +    + +  K
Sbjct: 860  GPKYIDPEKRVSYPTLPFLSIRRRMRMEMLAEEMRILYVALTRPKEKMFLVGTVSDAAAK 919

Query: 675  KSNQRTWYD--------------------------------------------------M 684
            +   ++  D                                                  +
Sbjct: 920  QRRWQSASDAKGYISDFRLSSASTFLDWLGPLAAAAFNQLPDETVPGHEDSRLLQWRAGV 979

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            V  +    E    ++     ++      +      +   +E++E ++  ++ +   +   
Sbjct: 980  VDAAMLGLEAAIGVEERTEEDQAREDRMQGVLSLAQLDQVEQDEELRNRLEWRYGYRAST 1039

Query: 745  S-PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR---------GLIIHKLLQVIF 794
                K  + E   L+   ++    +             +         G    +L     
Sbjct: 1040 LVAAKTSVTEMKRLHSEAVEMPEDSAALYPADTFSDRQQEDGKKSSGGGSYTFRL--RRP 1097

Query: 795  TLPEHKRKNFIT-----SYCTKNAKLWPAKEYKNL-------------LLSITRLLENPM 836
               E                 ++  L    +   L                    ++ P 
Sbjct: 1098 RFMEEAALTAAEKGTVSHLLMQHLPLAGDVDVDRLGSILSDMVSRKLLTARQADSIDLPA 1157

Query: 837  MTTAM----------SCDSYSEVSVSGKINC-----------PKKDIIISGRIDQISISQ 875
            +              +     EV  S                  + ++I G ID +   +
Sbjct: 1158 VAAFFDTEIGKRLVHAKWVRREVPFSCMFPAQRVYPGLAADMAGEPVLIQGVIDCLFEDE 1217

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              I + +YKT     ++ E     H  QL +Y + ++           + +    +   +
Sbjct: 1218 NGIVLLDYKTDRIYMKQWEQAAERHRFQLELYAEAIESVIGQPIAESHVFFFDGGRAVKL 1277


>gi|283470166|emb|CAQ49377.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            ST398]
          Length = 1217

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +S +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
             K     G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TKDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|170759836|ref|YP_001785776.1| recombination helicase AddA [Clostridium botulinum A3 str. Loch
            Maree]
 gi|251764515|sp|B1KUZ8|ADDA_CLOBM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|169406825|gb|ACA55236.1| ATP-dependent nuclease subunit A [Clostridium botulinum A3 str. Loch
            Maree]
          Length = 1279

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 156/992 (15%), Positives = 323/992 (32%), Gaps = 150/992 (15%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    +     +++  +      ++K   + +     +     ++ S  A   L    + 
Sbjct: 288  KDADKEAKERVKKLRDRVKKKILEIKNILNSYENEFIKKEFIFLYPSMKALSNLVILFDK 347

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             YE  K++  ++DF D+      +L     +   + +       ++   +LIDE QD++L
Sbjct: 348  KYEAKKRERDLIDFNDIEHLCLSILTDKDSEDHIIPSDTALDYRKKFTEVLIDEYQDSNL 407

Query: 191  IQWEVIRSLTEDFFVGKNTHS------------------SPRTLFAVGDEKQSIYSFHGA 232
            +Q  ++  ++         +                        F VGD KQSIY F  A
Sbjct: 408  VQEVIMSMVSRVKGYWSFYNGQLMFNEEEINLEEPHIGLDIPNRFMVGDVKQSIYRFRQA 467

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P+  L +             K   ++L  +FRS  +++  V+ +F    +      D T
Sbjct: 468  KPEIFLDKYNEYS---EEESIKNRKVKLFKNFRSREEVINGVNYLFKQIMSKTIGELDYT 524

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                 +              ++          ++       D      +  +  R +A  
Sbjct: 525  EEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNMDEEEALDNIQLEGRLVAKK 584

Query: 353  ISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            I  ++G +            G+ R +Q +DI++L+R   +   +            I V 
Sbjct: 585  IQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAPV---FVEELAKEGIPVF 641

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-------- 457
             +      +   IK +++L + I +   D+  + +L+SP+ +F++D++  I         
Sbjct: 642  ADTNSGYFNTTEIKTIISLLQIIDNPLQDIPLLSVLRSPIASFTDDELIDIRMVNKNIAF 701

Query: 458  ----------TQRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQ 496
                       +  E ++ Y +  +  +      +             I+ ++     + 
Sbjct: 702  YECMEIIYKLYKDEELDSYYSFYMEDEDKTNKIVKDIKEELKNKICSFIEKLNLWRKKSI 761

Query: 497  FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554
                 +F   +           +   G +    L        + E+ SY  L   I+ + 
Sbjct: 762  HIDIDEFIWFLYVETGYYGYVGALPAGEQRQANLRILFQRAKQYEKTSYKGLFNFINFIN 821

Query: 555  ----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                        +    N N VRIM++H +KGLE PVV L  TG         K +    
Sbjct: 822  KLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGTGKNFNMMDLNKNILFHR 881

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             L   P       +    + + + +   ++  T  E  R+LYV +TRA ++LII    N 
Sbjct: 882  DLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLIITGLINN 941

Query: 671  SNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKLTNSI-------- 704
             ++   +                   +T+ D +  +    +    ++    I        
Sbjct: 942  MDKTVEDWLNLSDDKNKVPEYAVMSGKTYLDWIGPALIKHKDAVSLREELKITSGLSNIV 1001

Query: 705  -NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI------------ 751
             +K +W    W+        +E  E       ++ +     S  K +I            
Sbjct: 1002 DDKSKWKIELWNKKELLKEKVEENEVEISEKIKETLMNLGESNYKEEIYKKLSFKYKYDN 1061

Query: 752  --NEPYILNPSTID------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
              + P  L+ S +                      K              RG IIH  +Q
Sbjct: 1062 ASSIPTKLSVSDVKKQFILDEKENTEELFKKVELRKPMFMGEEKKISPSERGTIIHLFMQ 1121

Query: 792  VIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYS 847
             +       E   K  I     +    +   +  N    I +   + +    + S +   
Sbjct: 1122 HLDLKKAENEEDIKEQINRLIEREFITYEQSKIINPYK-ILKFCRSELGKRMINSNNINR 1180

Query: 848  EVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
            E+  S ++                + +II G ID     ++ + + +YKT +    +IE 
Sbjct: 1181 EMPFSIEVPAVEIYRELDKDIYKDEKLIIQGIIDCYFEEEEGLVLLDYKTDYV--NDIEE 1238

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            I   +  Q+  YE+ L      K++    +Y+
Sbjct: 1239 IKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269


>gi|314933179|ref|ZP_07840544.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87]
 gi|313653329|gb|EFS17086.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87]
          Length = 1218

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 147/943 (15%), Positives = 298/943 (31%), Gaps = 128/943 (13%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            ++   K   L   +K           + +  K+         + K +   + + K+   +
Sbjct: 303  KKHYDKYKGLVSDVKNDYFSRSADDLKLDMQKLAPRVAYLAQIVKDVIEEFSKQKRSRNL 362

Query: 147  LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            LDF D       +L   D   + I     +    IL+DE QDT+ +Q +++  +      
Sbjct: 363  LDFADYEHFALQILTNEDGTPSHIAKTYREHFEEILVDEYQDTNRVQEKILSCI------ 416

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
             K        LF VGD KQSIY F  A+P   + +           G    +I+L  +FR
Sbjct: 417  -KTGEEYNGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFTSEGEGTG---MVIDLSQNFR 472

Query: 266  STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            S  ++L+  + +F     +N   +  D    + + +        VQL   + +  +    
Sbjct: 473  SRQEVLSTTNYLFKHMMDDNVGEIIYDDAAQLYYGAPYDQADKPVQLRALIEADRE---- 528

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVR 381
                          + + +   A  I   + ++I  + ++    G  R    KDI++L R
Sbjct: 529  ------------TSELTGSEQEANYIVEQVKDIIENEQVYDMKTGTYRSATFKDIVILER 576

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +        +    +  I      +    +   ++ +++  + + +   D+  V ++
Sbjct: 577  NTDNARN----LQQAFKNSDIPFHVKSKKGYFEQTEVQLVLSFLKTVDNPLQDIYLVGLM 632

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK------FQHVIKYIHELIHIA 495
            +S ++ F+ED++ +I          Y+ IQ + +   +K       Q  IK I       
Sbjct: 633  RSVIYQFTEDELAEIRVASPNDIYFYQSIQNYIDDNNAKEDLVHKLQRFIKDIKNYQDYR 692

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            Q    +             Q F    G +     L   +N  +  E +S+  L + I  +
Sbjct: 693  QNEPVYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLINKAIEFENSSFRGLFQFIRFI 752

Query: 555  EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++     +     N      N VR+MT+H++KGLE P V       +       + + + 
Sbjct: 753  DELIDRGRDFGEENIVGPSDNVVRMMTIHSSKGLEFPFVIYSGLSKKYNEKDLTQPVILN 812

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                          +    +   +      +K    E  RL+YV +TRA +QLI+     
Sbjct: 813  QQYGLGMDYYDTDKEMIYPSLSSAAYRAINRKEHISEEMRLIYVALTRAKEQLILIGRVK 872

Query: 670  TSNE---------------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
               E                      K++ +  Y ++          ++    +    + 
Sbjct: 873  KEQELTELEQLPISKDLIAVNERLTAKNSFKFIYSILAKHQSASLPDEQKFERDIETLNS 932

Query: 709  WIAYEWSTHHPENTPLEREETIKQLM------------------DEQKIPKKLFSPIKND 750
             +    +        +  EE   +                     +         P + D
Sbjct: 933  EVKPRVTITIDHYEDVSTEEVTPENERRTVNDIDDFNSGNDDVKAKIHHQLAYEYPYQED 992

Query: 751  INEPYILNPSTID-----------------------TKGKTNLESLLSDNQTFNRGLIIH 787
              +P   + S +                        T  +    S     +    G ++H
Sbjct: 993  TLKPSKQSVSELKRQLETEESDTNYDRVRQYRIGVATYERPRFLSEDKKRKANEIGTLMH 1052

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL---LLSITRLLENPMMTTAMSCD 844
             ++Q +        +  + SY          +E          I R +E+ +       D
Sbjct: 1053 TVMQHLPFKETGLTREELDSYIDMLIHRNIIEEDAKADIKYDDIMRFIESSLYLQIAQAD 1112

Query: 845  -SYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---HHVPQEI 893
              Y+E           ++    +D+ II G ID I       +  +YKT           
Sbjct: 1113 KVYTEFPFVVNQAKVDQLPEDNQDVSIIQGMIDLIFQKDGKYYFVDYKTDAFNRRKGMTD 1172

Query: 894  EH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            E     +   +  Q+  Y   L+       +   L +     +
Sbjct: 1173 EEIGQQLKEKYQIQMKYYRNTLETILKQ-PVQGYLYFFKFGML 1214


>gi|226325452|ref|ZP_03800970.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758]
 gi|225206195|gb|EEG88549.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758]
          Length = 1214

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 159/977 (16%), Positives = 306/977 (31%), Gaps = 120/977 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEERFS---LLSSFFLTQKF--TPQKNIITQEINKKSPDLKE 98
                K  + L  A   + + E         +    +     P K    +        L +
Sbjct: 248  EADQKVLRKLFAAKSYEEMYEALKEKPAWKTLSRKKDDAVDPTKREQVRAYRDTWKKLID 307

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
             ++ +           +           ++L K         K +  ++DF D+      
Sbjct: 308  DIRNNYFFQPPSEMEADRKICIPVMHELVSLVKEYQRVLAAKKAEKNLIDFRDMEQFALQ 367

Query: 159  LLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            +L +++    V + +  +       ++IDE QD++LIQ  ++                  
Sbjct: 368  ILTRKENGKRVPSEVAKEYQNTFEEVMIDEYQDSNLIQEAIL-------TSVSRISRGEN 420

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             LF VGD KQSIY F  + P+  + +                 I+L  +FRS A++L  V
Sbjct: 421  NLFMVGDVKQSIYRFRLSRPELFMEKFNTYSLTYGGN----RRIDLHKNFRSRAEVLDAV 476

Query: 275  DKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
            + +F     E    ++ D    +   +S             + ++ + +           
Sbjct: 477  NFIFRQIMTEELGRITYDENAALYVGASYPESEKNETEILLLDTKSEEEDTGLSV----- 531

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLIT 390
                  +++  +  R IA  I  ++    I     G  R I+ +DI++L R        T
Sbjct: 532  --RSGSQTAKELEVRLIAQRIGELMENQQIVDKETGMLRPIRYQDIVILTRS---PAGWT 586

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                 +  D  I V+        + L I  +M   R + +   D+  V +LKSP    + 
Sbjct: 587  DTVTRILQDEGIPVLAESADGYFETLEIGWMMDYLRVLDNFRQDIPLVAVLKSPFGRMTN 646

Query: 451  DDIFKICTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            +++ +I     E             E         + K + V  ++        + + HD
Sbjct: 647  EELAQIRELNAEVPFYQNVLETADPEKKTDLPAGILKKVRDVFGWLFYFRERIPYTAIHD 706

Query: 503  FFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ----- 556
                I+     R    +   G      LD  +      E  SY  L   +  ++Q     
Sbjct: 707  LLWEIMKKTGYRDYIAAMPGGKGRRANLDMLITRAKAFEATSYKGLYHFVRYIDQLKKYN 766

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                    +    + VR+M++H +KGLE PVV +   G +         + I P L    
Sbjct: 767  VDFGEAGLYDEQTDAVRLMSIHKSKGLEFPVVIVTGMGKRFNIQDTTASVVIHPDLGFGI 826

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--- 673
                   ++KS   +   +   +      E  R+LYV +TRA ++LI+      + +   
Sbjct: 827  DAIDLERRTKSPTLLKKVIQNEIGLENLGEELRVLYVALTRAKEKLILTGTVPHAADKLE 886

Query: 674  -----------------KKSNQRTWYDMVYDSFHNDERVKKIKL---------TNSINKD 707
                             K +   ++YD +  +         I+L            ++K+
Sbjct: 887  ACQLEQENSQKETLDFTKLARATSYYDWILPAAVRKTEEVPIELKVIGVDTLVEGEVDKE 946

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK------------------- 748
                 E      +    E   ++       KI +                          
Sbjct: 947  AADYLEKEVFLEKIEAEEHPMSVTDERFRAKIEEAFSYRYPYQGEDQLKMKYTVSELKKY 1006

Query: 749  ---NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT---LPEHKRK 802
               ++  +  IL P         N      + +   +G   HK+++++           +
Sbjct: 1007 AAASEEEDGEILIPEEEIVPILPNFMKEEEEVKGATKGTAYHKVMELLDFSKIYTMDLLR 1066

Query: 803  NFITSYCTKNAKLWPAKEYKNLL-LSITRLLENPMMTTAM----SCDSYSEVSVSGKINC 857
              I +   KN     A     +    I   L   +         +   Y E      ++ 
Sbjct: 1067 ENIENL--KNEGYLDAGTAGCIQKKEIMEFLNTNVGKRMQNAARAKTLYREQPFVLGVDA 1124

Query: 858  --------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                      + ++I G ID        I + +YKT     Q    +   +  QL +Y K
Sbjct: 1125 KEFYPDQKKGEMVLIQGIIDAYFEEDGEIIVLDYKTDRV--QTEAELKDRYREQLRLYTK 1182

Query: 910  ILKDSYPNKSLVCLLIY 926
             L+     K +   +IY
Sbjct: 1183 ALEQIIR-KKVKEQIIY 1198


>gi|323440877|gb|EGA98585.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O11]
          Length = 1217

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 152/939 (16%), Positives = 297/939 (31%), Gaps = 128/939 (13%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            KK   L +K+K           + +  ++         + K + + +   K+   +LDF 
Sbjct: 308  KKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFS 367

Query: 151  DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D       +L   D   + I     Q    IL+DE QDT+ +Q +++  +       K  
Sbjct: 368  DYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCI-------KTG 420

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  LF VGD KQSIY F  A+P   + + +         G     I+L  +FRS  +
Sbjct: 421  DEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTG---RRIDLSQNFRSRKE 477

Query: 270  ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +L+  + +F     E    ++ D +  + + +        V L   V +  +        
Sbjct: 478  VLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYDESDHPVNLKVLVEADQEH------- 530

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385
                        + +   A  I   + +++    ++    G  R    KDI++L R    
Sbjct: 531  ---------SDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQ 581

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                    +    +  I    N R    +   ++ +++  R I +   D+  V +++S +
Sbjct: 582  ARN----LQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVI 637

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
            + F ED++ +I       +  Y+ I  + N          K +  +  I      ++   
Sbjct: 638  YQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHP 697

Query: 500  PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
             +             Q F    G       L    N  +  E +S+  L + I  +++  
Sbjct: 698  VYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELI 757

Query: 559  PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
               K     N      N VR+MT+H++KGLE P V               + + +     
Sbjct: 758  ERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFG 817

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                      +    +          +K    E  RL+YV +TRA +QL +         
Sbjct: 818  LGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKS 877

Query: 674  ---------------------KKSNQRTWYDMVYDSFHN--DERVKKIKLTNSINKDEWI 710
                                   +     Y ++         + +K  K    I      
Sbjct: 878  LLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRP 937

Query: 711  AYEWSTHHPENTPLER----------------EETIKQLMDEQKIPKKLFSPIKNDINEP 754
                S  + E+   E                 +   + +  + K       P  ND  +P
Sbjct: 938  NVNISIVYFEDVSTETILVNDEYRSVNQLETMQYGNEDVKAQIKHQLDYQYPYVNDTKKP 997

Query: 755  YILNPSTI-----------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
               + S +                        T  +    S     +    G ++H ++Q
Sbjct: 998  SKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQ 1057

Query: 792  VIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLENPMMTTAM-SCDSYS 847
             +    E   +  +  Y     +  +  A   K++    I   + + + +    +   Y 
Sbjct: 1058 HLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYR 1117

Query: 848  EVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---HHVPQEIEH-- 895
            E+          ++    +D+ II G ID I +     +  +YKT           E   
Sbjct: 1118 ELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIG 1177

Query: 896  --IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
              +   +  Q+  Y+  L+    NK +   L +     +
Sbjct: 1178 TQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFKFGTL 1215


>gi|49485743|ref|YP_042964.1| hypothetical protein SAS0837 [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|297208398|ref|ZP_06924828.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            ATCC 51811]
 gi|81649660|sp|Q6GAV9|ADDA_STAAS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|49244186|emb|CAG42612.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|296887137|gb|EFH26040.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            ATCC 51811]
          Length = 1217

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 156/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    +          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|222150842|ref|YP_002559995.1| hypothetical protein MCCL_0592 [Macrococcus caseolyticus JCSC5402]
 gi|222119964|dbj|BAH17299.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 1148

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 158/983 (16%), Positives = 336/983 (34%), Gaps = 108/983 (10%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ--TQCIEERFSLLSSF 72
             I + +    +  V  I +   L +     T L+  Q +++  +   + +EE+FS + S 
Sbjct: 207  SINQQINDELHQAVQLIKRAEDLCISPALDTNLEYLQKIREQLEQFPESLEEKFSFIQSI 266

Query: 73   FLTQKFTPQKN--IITQEINKKSPDLKEKLKKS---------QDEFIKIRDRFNTYKMFK 121
               +K   +K+     +E+N+   +   + KK               ++ D      +  
Sbjct: 267  QFGRKPNMKKSDDPYDKELNEGIKEYLTQSKKLVSNIQENYLYAPIEELADDIRAMSV-- 324

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                   + + +   + + K++  ++DF D       +L   D    I + +  +   IL
Sbjct: 325  EVERLTRMTQMVIDRFSQLKRERKLIDFSDYEHFALQILIHNDEPTEIAHMLKAQYKEIL 384

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT+ +Q  +I+++  D             +F VGD KQSIY F  AEP+  + + 
Sbjct: 385  VDEYQDTNRVQESIIQAIKRDD-----------NMFMVGDVKQSIYKFRQAEPELFMEKY 433

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRS 299
               +      G    +I+L  +FRS   ++   +++FS   + +   +  D    + + +
Sbjct: 434  SHFKS-----GGPGKVIDLSQNFRSRRAVINNTNEIFSKIMDEKLGDIIYDDDQMLYYGA 488

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     +L                       +           +  IA  I  +I  
Sbjct: 489  PYDDMSQHTELHLL--------------------NKEELNDIEYFASHHIADVIEQIIAQ 528

Query: 360  DTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
            + ++    G+ R  Q KDI +L R          + +    D KI    N +        
Sbjct: 529  EEVYDVKTGEYRAAQYKDIAILERGFSSAAEHMKVMK----DRKIPFHVNSKEGYFQTDE 584

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---ETETVYEYIQKFA 474
            I  +++L R + +   D+    +L+S ++ F   ++  + +          +   +    
Sbjct: 585  INTILSLLRVVDNPLQDIPLAGLLRSIIYQFDAHELTALRSDCSVFLYHNLLSYSVNGED 644

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFL 533
                 K + V+  I +    ++  S  D    I       ++F +   G++    L+  L
Sbjct: 645  AQLKYKVKKVLADISDYREQSRKVSVKDLIDYIYNDTLLIEKFTLLPGGHQRQANLEGLL 704

Query: 534  NFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                + EQ+SY  + + +  ++               S   N VR+MTVH +KGLE P V
Sbjct: 705  QKAEQFEQSSYRGIYQFLRFVDNILEAGKDFGEMNIVSDEANVVRMMTVHASKGLEFPFV 764

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
               +   Q    +  +++ +   L         +  +     I       ++     E  
Sbjct: 765  IYNNIDRQFNLMETKEQLLLNQRLGLSITFYDKMAHTTYPLAINQLFKTKIRNEQVSEEL 824

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            RL+YV +TRA ++L++  +       +  Q    D   D ++    +  ++    I   +
Sbjct: 825  RLMYVALTRAREKLVLVGNVKDDKVIEKFQNVDVDKKMDDYYRLSALSPLQFIAPIALHD 884

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIP----KKLFSPIKNDINEPYILNPSTIDT 764
                            +  ET +    E        K    P  ++   P   + S I  
Sbjct: 885  DSIDVRMIRTLNTLENKATETAESTKAEGVTWLQELKDYRYPYLSENLLPTKESVSEIKK 944

Query: 765  KGK----------------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
              +                                     G ++HK++Q +  L     +
Sbjct: 945  AQETDDEATAWTYINQYRLGKATYDRPKFMSEEKKTAAEYGTLMHKVMQHLPRLNNVDSE 1004

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLS--ITRLLENPMMTTA-MSCDSYSEVSVSGK---IN 856
            +          +   + E + L+    I +  +  +      + + Y E+        I 
Sbjct: 1005 DIKHFLDDLVNRRIISDEERPLINEKHIYQFTKTVLYDRLVHADEVYFELPFVIGKQYIT 1064

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTH-------HHVPQEIEHIPYTHIAQLSIYEK 909
                D ++ G ID +   + + +  +YKT            + +  +   +  Q++ Y+K
Sbjct: 1065 QSHPDQLVQGMIDCVFKYEGHYYFIDYKTDQVISRLGRTTEETLAELKLRYEVQMNYYKK 1124

Query: 910  ILKDSYPNKSLVCLLIYVSEPKV 932
             L+    ++ +   L +     V
Sbjct: 1125 TLEVIL-DEPVTGYLYFFEAGTV 1146


>gi|227523105|ref|ZP_03953154.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii
            ATCC 8290]
 gi|227089709|gb|EEI25021.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii
            ATCC 8290]
          Length = 1254

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 148/1006 (14%), Positives = 307/1006 (30%), Gaps = 146/1006 (14%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
              L+Q          F  ++   LT+     +  + + +   +  +K++ +K    +   
Sbjct: 273  DGLRQLITGFD----FESMTKAKLTKDADEHQKQVHKLVKGTNDQMKKQWQKLVTGYFAW 328

Query: 111  RDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-RDVS 166
             ++ N              +T+ +   A Y++AK +  ++ F D+     D+L    + +
Sbjct: 329  NEQDNVDLMNAAKARIEKLVTVVRTFRAAYKQAKARRHLMQFIDIEHAAYDILNDVSEQA 388

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +R ++  +   I+ DE QD + +Q  ++  +           S     F VGD KQSI
Sbjct: 389  KQVRQRLQDQYYEIMTDEYQDNNRLQDAILNKIA---------RSDRGNRFMVGDVKQSI 439

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA-- 284
            Y F  A+P   ++++               +I L  +FRS  +I    + VF    +   
Sbjct: 440  YRFRLADPTMFIKKQAQY----IEQDNDNELISLSENFRSAKNIDDFTNLVFEQTMDHQV 495

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
              ++    + ++  ++         +   +     S      E   +       +S    
Sbjct: 496  GDIAYTGKSKLQFGATYYPDDMKADVSLIIYRTKSSAAATSNEDLGAGDQIEDSDSGQ-- 553

Query: 345  LARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             A  IA  I  ++    +  + K    R +   DI ++     +          +   Y 
Sbjct: 554  -AEIIAQKIRTLVDDKQLIYDKKLEEMRPVTFGDIAIISPTHNN----ELTLSDIFTQYG 608

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            I               I+ +M+L   I +   D++ V +L+SP+    E+ +  +   R+
Sbjct: 609  IPAEITGAKSYFKTTEIQIMMSLLSIIDNPFQDIALVAVLRSPIVGLDENQLAFLRINRN 668

Query: 462  ETETVYE-----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                                  +A     K    +K +     +AQ          I   
Sbjct: 669  TGNYYQAVLDFYRGFDRLEPNDYATRIYQKVDRFMKQLRRFKDVAQQDGLVSLIWDIYDQ 728

Query: 511  KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
                        G +    L    +     E+N +  L + +  +++             
Sbjct: 729  TGYLDYVGGMPAGLQRQTNLHALYDRAADYEKNGFKGLFQFVKFIQRMQERDNDLANANP 788

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            + + N V +MT+H +KGL+ P+VFL D G Q      I K  +               + 
Sbjct: 789  TTSENTVHVMTIHGSKGLQFPIVFLNDVGKQFNMQDTIGKYVLNDHWGIGIDYLNNQTRE 848

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----------- 674
                     ++   K +   E  R LYV MTRA  +L +                     
Sbjct: 849  FRSPLQKQAILDMTKNAGLSEEMRKLYVAMTRAEQRLYLVAKVKGEKSGDNQQLIQGWQG 908

Query: 675  -------------KSNQRTWYDMVYDSFHNDERV----------------KKIKLTNSIN 705
                         ++  +++   +  +      V                  +   +  +
Sbjct: 909  LTDANELVLPAAVRNAAKSYLGWIGPAISRHPNVLDRFGDSIHSNVLAGDPTLFNLDFYD 968

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--------LFSPIKNDINEPYIL 757
             +            + +P +  + + Q       P K           P           
Sbjct: 969  DERITKESGRQKANQTSPNDFIDQLAQKKLTVAQPTKAAISQVMTFKYPHTAATKTTAYQ 1028

Query: 758  NPSTIDTKGKTN--------------------------------LESLLSDNQTFNRGLI 785
            + S I                                       +            G  
Sbjct: 1029 SVSEIKRLFDDPDNTQLSGYSTLDVNKLAKTGRYLKTDFEVPQFISEGGGKPAPTEIGTA 1088

Query: 786  IHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS- 842
             H +LQ I   T+P  +R   + +   K   + P    +  +  + R  ++ +    ++ 
Sbjct: 1089 THLVLQQIDLTTVPTIERIEALIANLVKQQVISPEVASQINVDEVLRFYQSEVGKYVLAN 1148

Query: 843  -CDSYSEVSVSG---------KINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
              +++ E   S                +  I+I G ID    + + +++F+YKT H  P+
Sbjct: 1149 PENTHREAPFSLLMKARDVFKDFQDNDEQTILIHGIIDGYVATNEAVYLFDYKTDHITPK 1208

Query: 892  -EIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935
              I  I   +  QL +Y   L      + +    L  +S  +   +
Sbjct: 1209 TTISDIVDRYRGQLELYGLALSKIL-GRPITHKYLYLLSANQAVQV 1253


>gi|323466409|gb|ADX70096.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus helveticus
            H10]
          Length = 1204

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 172/995 (17%), Positives = 321/995 (32%), Gaps = 123/995 (12%)

Query: 33   KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92
            K ++   E+           +Q   +    +++  LL S   T  F   K    +++ + 
Sbjct: 240  KELAKVKESFTLFAQNLNNFVQAVKEDDDYDKQRELLRSCVFTINFRKSKKW-DEDLLEF 298

Query: 93   SPDLKEKLKKSQDEFIKI---------RDRFNTYKMFKSTLASLTLAK-YLNAHYEEAKK 142
              +++    +++ +             +++    +  +  + +++ A+  L   + + K+
Sbjct: 299  YNEIQSLKDEAKSQVFDTFTSFYAVTEKEQIKIMQESQKIVTAISTAEIKLIERFNQLKR 358

Query: 143  KNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
               +LD+ D+      +L      S   R     +   ILIDE QD + +Q  +I+ +  
Sbjct: 359  NANLLDYSDMEQLAYQILSPDTSSSQMARDFYQNKFKEILIDEYQDINALQERIIQQIKS 418

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +            TLF VGD KQSIY F  AEP   L++     +           I L 
Sbjct: 419  E---------KKNTLFMVGDVKQSIYGFRQAEPSLFLQKYHQFAEDENEHE---ERILLS 466

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             +FRST  +   V+ VF    +      D               G +    +   +   Q
Sbjct: 467  DNFRSTEPVTQTVNAVFKSILSTDFGGIDYQKE-----------GQLIFGAKYYPKSLPQ 515

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILV 378
             +          +   +        + +   I  +        +   GK R ++  DI +
Sbjct: 516  ASEVIVHEKKNNNEKSENEIDFSEIQMVLARIKQLEDEHVQIFDSNTGKMRDMEYSDIAI 575

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            L R R D                I +   D         +  +M   + I + + D+  V
Sbjct: 576  LTRSRSD----NLEIMQEFAKQDIPLFVTDAENYFQTFELTVMMNYLKIIDNPDQDIPLV 631

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--ISKFQHVIKYIHELIHIAQ 496
             +L+SPLFNF E ++ KI  +   +                  K ++ +  + EL   A 
Sbjct: 632  TVLRSPLFNFDEKELAKIRIKSKNSNFYSALTSYVGTNDVLSKKCKNFLNQLAELRSFAT 691

Query: 497  FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                 +    I       +   +   G +    L+         E   +  L + I+ ++
Sbjct: 692  THRISELIWSIYERTNLLEIMTALPNGEQRRVNLEALYERATSYESAGFKGLYQFINFID 751

Query: 556  QY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +                  N VR+MT+H +KGLE P+VF V                I  
Sbjct: 752  RMRRSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHHYQMRDLNGNYII-- 809

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              +D  GI +     +  + + +      K+   EE  R+LYV +TRA  +LI+     +
Sbjct: 810  -NSDSMGITLREQNYRVDSLVKAMGNITKKQQLLEEEARILYVALTRAKQKLILVGDVPS 868

Query: 671  SNEKKSNQRT---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----------- 716
             N+K     T       +              +  S+  D  +  + +            
Sbjct: 869  FNKKVKEWSTELNHAGQLPLINKLSATSPLSFIGPSLRFDRHVVIKLNDITKSIDQSQKI 928

Query: 717  -------------HHPENTPLEREETIKQLMDEQKIPK--KLFSPIKNDINEPYILNPST 761
                            E+T  + E T K  +  Q + K  +   P ++          S 
Sbjct: 929  LFIDYQDEDTKFIKKDEDTDNQNENTSKSALLTQTVNKLYQFNYPFRDASETTAYQAVSE 988

Query: 762  IDTKGKTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF-T 795
            I       +++ L ++                              G   H +LQ    T
Sbjct: 989  IKKAFNDPIDAELENSHLLTSTNRYLQPIDIKPNFLYQTKFTGAEIGTATHLILQYYDYT 1048

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVS- 852
                   +   +   +  KL P          I   +             +   EV  S 
Sbjct: 1049 NDSADNLDQEIATLIEQKKLNPDIVSSLNKDQIDWFVHGDFAKDFWKEPTNLKREVDFSS 1108

Query: 853  --------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTH 900
                       + P   I++ G ID   +++  I +F+YKT H       + IE I   +
Sbjct: 1109 LLSARTLFKDFSDPDAKILVHGTIDGYFVAKNGIILFDYKTDHVNKTNIDKSIELIKEKY 1168

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              QL +YE+ L +    K +   LI +   +V  +
Sbjct: 1169 TGQLRLYEQALNEFSEKKVIGKYLILLDAKQVVEV 1203


>gi|320141216|gb|EFW33063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            MRSA131]
          Length = 1217

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 158/1024 (15%), Positives = 315/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGDFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +S  
Sbjct: 456  TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGASYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|87161998|ref|YP_493570.1| exonuclease RexA [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161509167|ref|YP_001574826.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
            aureus USA300_TCH1516]
 gi|262049318|ref|ZP_06022192.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30]
 gi|284023894|ref|ZP_06378292.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 132]
 gi|294847955|ref|ZP_06788702.1| recombination helicase AddA [Staphylococcus aureus A9754]
 gi|123486587|sp|Q2FIA8|ADDA_STAA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|251764539|sp|A8Z073|ADDA_STAAT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|87127972|gb|ABD22486.1| exonuclease RexA [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160367976|gb|ABX28947.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
            aureus USA300_TCH1516]
 gi|259162550|gb|EEW47118.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30]
 gi|294824755|gb|EFG41177.1| recombination helicase AddA [Staphylococcus aureus A9754]
 gi|315197320|gb|EFU27658.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
            aureus CGS01]
 gi|320143273|gb|EFW35063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            MRSA177]
          Length = 1217

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 157/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|57651659|ref|YP_185840.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL]
 gi|88194662|ref|YP_499458.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            NCTC 8325]
 gi|151221050|ref|YP_001331872.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman]
 gi|221142113|ref|ZP_03566606.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452081|ref|ZP_05700097.1| exonuclease RexA [Staphylococcus aureus A5948]
 gi|262052141|ref|ZP_06024349.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3]
 gi|282922247|ref|ZP_06329942.1| recombination helicase AddA [Staphylococcus aureus A9765]
 gi|304381479|ref|ZP_07364129.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            ATCC BAA-39]
 gi|81694859|sp|Q5HHB7|ADDA_STAAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|122539894|sp|Q2FZT5|ADDA_STAA8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|251764538|sp|A6QFH8|ADDA_STAAE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|57285845|gb|AAW37939.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL]
 gi|87202220|gb|ABD30030.1| ATP-dependent nuclease subunit A, putative [Staphylococcus aureus
            subsp. aureus NCTC 8325]
 gi|150373850|dbj|BAF67110.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman]
 gi|257860296|gb|EEV83128.1| exonuclease RexA [Staphylococcus aureus A5948]
 gi|259159960|gb|EEW44996.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3]
 gi|269940469|emb|CBI48846.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|282593537|gb|EFB98531.1| recombination helicase AddA [Staphylococcus aureus A9765]
 gi|302750795|gb|ADL64972.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            str. JKD6008]
 gi|304339842|gb|EFM05786.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            ATCC BAA-39]
 gi|329313635|gb|AEB88048.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus
            subsp. aureus T0131]
 gi|329726247|gb|EGG62717.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            21189]
          Length = 1217

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 157/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|283770033|ref|ZP_06342925.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus
            subsp. aureus H19]
 gi|283460180|gb|EFC07270.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus
            subsp. aureus H19]
          Length = 1217

 Score =  365 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 158/1024 (15%), Positives = 317/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    ++ D +  + + +   
Sbjct: 456  TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  IH     ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIHSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|187777525|ref|ZP_02993998.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC 15579]
 gi|187774453|gb|EDU38255.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC 15579]
          Length = 1279

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 169/969 (17%), Positives = 330/969 (34%), Gaps = 150/969 (15%)

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            +LK   D +     R     ++ S  A   L    +  YE  K++  ++DF D+      
Sbjct: 311  ELKNILDSYENEFIRKEFIFLYPSMKALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLS 370

Query: 159  LLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-- 211
            +L         + + I     ++   +LIDE QD++L+Q  ++  ++        ++S  
Sbjct: 371  ILTDKTDEGHIIPSNIALDYRKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGYWSFSNSQL 430

Query: 212  ----------------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
                                 F VGD KQSIY F  A+P+  L +           G K+
Sbjct: 431  VFNEEEINFEEPQVGLDIPNRFMVGDVKQSIYRFRQAKPEIFLDKYNQYS---EEEGSKY 487

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIG--QVGTVQLW 311
              I+L  +FRS  +++  V+ +F    +     L       +   +S     +  +++L 
Sbjct: 488  RKIKLFKNFRSREEVINGVNYLFKQIMSKTIGELDYTEKEALTVGASYGEEVKGESIELC 547

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKK 368
                    S+   ++ +          +    ++A++I   I N +       +   G+ 
Sbjct: 548  LMDKKYELSEEVLKEYNIDEEEALDNIQLEGRLVAKKIQEVIGNNLEGGLKVFDKKLGEY 607

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R IQ +DI++L+R   +   +            I V  +      D   IK +++L + I
Sbjct: 608  RRIQYRDIVILMRATSNWAPV---FVEELAKEGIPVFADTNSGYFDTTEIKTIISLLQII 664

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKIC------------------TQRHETETVYEYI 470
             +   D+  + +L+SP+ +F++DD+  I                    +  + ++ Y + 
Sbjct: 665  DNPLQDIPLLSVLRSPIASFTDDDLIDIRMVNKNIAFYECMEIIYRLYKNEKLDSYYSFY 724

Query: 471  QKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
             +  +      +             I+ ++     +      +F   +           +
Sbjct: 725  VEDEDKINKIVKDMKEELKNKICSFIEKLNLWRKKSIHIDIDEFIWFLYVETGYYGYVGA 784

Query: 520  -RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVR 573
               G +    L        + E+ SY  L   I+ +             +    N N VR
Sbjct: 785  LAAGEQRQANLRILFQRAKQYEKTSYKGLFNFINFINKLKFSSGDMGSAKILGENENVVR 844

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            IM++H +KGLE PVV L  TG         K +     L   P       +    + + +
Sbjct: 845  IMSIHKSKGLEFPVVILSGTGKNFNMTDLNKNILFHRDLGYGPDYVDIERRIAYPSLVKN 904

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ--------------- 678
             +   ++  T  E  R+LYV +TRA ++LII    N  ++   N                
Sbjct: 905  IIKNKIRLETLSEEMRILYVALTRAREKLIITGLINNVDKTVENWLNLSEEKNKVPEYAV 964

Query: 679  ---RTWYDMVYDSFHNDERVKKIKLTNSINKDE---------WIAYEWSTHHPENTPLER 726
               +T+ D +  +    +     +    +  +          W    W+        +E 
Sbjct: 965  MSGKTYLDWIGPAVIKHKDAVSFREELKMASELCNIVDDNSKWKIELWNKKELLKEKVEE 1024

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDI--------------NEPYILNPSTIDTKGKTNLES 772
             E       ++ + K   S  K +I              N P  L+ S +  +   + E 
Sbjct: 1025 NEIEISEKIKETLMKLEESNYKEEIYKRLSFKYKYDNASNIPTKLSVSDVKKQFILDDEE 1084

Query: 773  LLSDN------------------QTFNRGLIIHKLLQVIFT---LPEHKRKNFITSYCTK 811
               +                       RG IIH  +Q +       E   K  I     K
Sbjct: 1085 NTEELFKKVELRKPMFMEEKKKISPSARGTIIHLFMQHLDLKKVEKEEDIKEQINRLIEK 1144

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINC------------P 858
                +   +  N    I +   + +    + S +   E+  S +I               
Sbjct: 1145 EFITYEQSKVINPYK-ILKFCRSELGKRMVNSNNINREMPFSIEIPAVEIYKELDKEIYK 1203

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             + ++I G ID     ++ + + +YKT +    +IE I   +  Q+  YE+ LK     K
Sbjct: 1204 DEKLMIQGIIDCYFEEEEGLVLLDYKTDYV--NDIEEIKNRYKIQIKYYEEALKRI-TGK 1260

Query: 919  SLVCLLIYV 927
            ++    +Y+
Sbjct: 1261 TVKDKYLYL 1269


>gi|223042879|ref|ZP_03612927.1| recombination helicase AddA [Staphylococcus capitis SK14]
 gi|222443733|gb|EEE49830.1| recombination helicase AddA [Staphylococcus capitis SK14]
          Length = 1218

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/943 (15%), Positives = 303/943 (32%), Gaps = 128/943 (13%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            ++   K   L   +K           + +  K+         + K +   + + K+   +
Sbjct: 303  KKHYDKYKSLVSDVKNDYFSRSADDLKLDMQKLAPRVAYLAQIVKDVIEEFSKQKRSRNL 362

Query: 147  LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            LDF D       +L   D   + I     +    IL+DE QDT+ +Q +++  +      
Sbjct: 363  LDFADYEHFALQILTNDDGTPSHIAKTYQEHFEEILVDEYQDTNRVQEKILSCI------ 416

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
             K        LF VGD KQSIY F  A+P   + +           G    +I+L  +FR
Sbjct: 417  -KTGEEYNGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFTSEGEGTG---MVIDLSQNFR 472

Query: 266  STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            S  ++L+  + +F     +N   +  D    + + +        VQL   + +  +    
Sbjct: 473  SRQEVLSTTNYLFKHMMDDNVGEIIYDDAAQLYYGAPYDQTDKPVQLRALIEADKE---- 528

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVR 381
                          + + +   A  I   + ++I  + +F    G  R    KDI++L R
Sbjct: 529  ------------TSELTGSEQEANYIVEQVKDIIANEQVFDMKTGTYRSSTFKDIVILER 576

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +        +    +  I      +    +   ++ +++  + + +   D+  V ++
Sbjct: 577  NTDNARN----LQQAFKNSDIPFHVKSKKGYFEQTEVQLVLSFLKTVDNPLQDIYLVGLM 632

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK------FQHVIKYIHELIHIA 495
            +S ++ F+ED++ +I          Y+ IQ +     SK       Q  IK I      +
Sbjct: 633  RSVIYQFTEDELAEIRVVSPNDIYFYQSIQNYIEDDNSKTHLVHKLQRFIKDIKNYQDYS 692

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            Q    +             Q F    G +     L   +N  +  E +S+  L + I  +
Sbjct: 693  QNQPVYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLINKAIEFENSSFRGLFQFIRFI 752

Query: 555  EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++     +     N      N VR+MT+H++KGLE P V       +       + + + 
Sbjct: 753  DELIDRGRDFGEENIVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKYNEKDLTQPVILN 812

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                          +    +   +      +K    E  RL+YV +TRA +QLI+     
Sbjct: 813  QQYGLGMDYYDTDKEMVYPSLSSAAYRAINRKGHISEEMRLIYVALTRAKEQLILIGRVK 872

Query: 670  TSNE---------------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
               E                      K++ +  Y ++           +    +    + 
Sbjct: 873  KEQELTELEQLPISADLIAVNERLTAKNSFKFIYSILSKHQSASLPDDQKFERDIETLNS 932

Query: 709  WIAYEWSTHHPENTPLEREETIKQ------------------LMDEQKIPKKLFSPIKND 750
             +    +        +  EE   +                  +  +         P ++D
Sbjct: 933  EVKPRVTITIDHYEDVSTEEVTPENERRTVNDIDDINSGNDDIKAKIHHQLAYRYPYQDD 992

Query: 751  INEPYILNPSTID-----------------------TKGKTNLESLLSDNQTFNRGLIIH 787
              +P   + S +                        T  +    S     +    G ++H
Sbjct: 993  TLKPSKQSVSELKRQLETEESNTNYDRVRQYRIGVATYERPRFLSENKKRKANEIGTLMH 1052

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL---LLSITRLLENPMMTTAMSCD 844
             ++Q +        +  + SY  K  +L   +E          I R +E+ +       D
Sbjct: 1053 TVMQHLPFNETGLTREELDSYVDKLIQLNIIEEDAKADIKYDDIMRFIESSLYLQIAQAD 1112

Query: 845  -SYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---HHVPQEI 893
              Y+E+          ++    +D+ II G ID I       +  +YKT           
Sbjct: 1113 KVYTELPFVVNQAMVDQLPEDNQDVSIIQGMIDLIFQKDGKYYFVDYKTDAFNRRKEMTD 1172

Query: 894  EH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            +     +   +  Q+  Y   L+       +   L +     +
Sbjct: 1173 DEIGQQLKQKYQIQMEYYRNTLETILKQ-PVQGYLYFFKFGML 1214


>gi|258455496|ref|ZP_05703455.1| recombination helicase AddA [Staphylococcus aureus A5937]
 gi|257862314|gb|EEV85083.1| recombination helicase AddA [Staphylococcus aureus A5937]
          Length = 1217

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 160/1009 (15%), Positives = 311/1009 (30%), Gaps = 149/1009 (14%)

Query: 28   VSDINKYVSLSMETGN-----PTILKKAQTL--QQASQTQCIEERFSLLSSFFLTQKFTP 80
            + D  + +   +E G       T  +    L    A   +  E     L    L  ++  
Sbjct: 252  IEDERRLMGRVLEGGFIDIPYLTDHEFGARLPNVTAKIKEANEMMVDALEDAKL--QYKK 309

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
             K++I +  N       + LK    +                      + K + + +   
Sbjct: 310  YKSLIDKVKNDYFSREADDLKADMQQL------------APRVKYLARIVKDVMSEFNRK 357

Query: 141  KKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K+   +LDF D       +L   D   + I     Q    IL+DE QDT+ +Q +++  +
Sbjct: 358  KRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCI 417

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                   K        LF VGD KQSIY F  A+P   + + +         G     I+
Sbjct: 418  -------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTG---RRID 467

Query: 260  LPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            L  +FRS  ++L+  + +F     E    +  D    + + +        V L   V + 
Sbjct: 468  LSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEAD 527

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKD 375
             +                    + +   A  I   + +++    ++    G  R    KD
Sbjct: 528  QEH----------------SDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKD 571

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I++L R            +    +  I    N R    +   ++ +++  R I +   D+
Sbjct: 572  IVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDI 627

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIH 489
              V +++S ++ F ED++ +I       +  Y+ I  + N          K +  +  I 
Sbjct: 628  YLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQ 687

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQ 548
                 ++    +             Q F    G       L    N  +  E +S+  L 
Sbjct: 688  SYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLY 747

Query: 549  ELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + I  +++     K     N      N VR+MT+H++KGLE P V               
Sbjct: 748  QFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLK 807

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            + + +               +    +          +K    E  RL+YV +TRA +QL 
Sbjct: 808  QPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLY 867

Query: 664  ICKHSNTSNE---------------------KKSNQRTWYDMVYDSFHN--DERVKKIKL 700
            +                                +     Y ++         + +K  K 
Sbjct: 868  LIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKD 927

Query: 701  TNSINKDEWIAYEWSTHHPENTPLER----------------EETIKQLMDEQKIPKKLF 744
               +          S  + E+   E                 +   + +  + K      
Sbjct: 928  IAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNGNEDVKAQIKHQLDYQ 987

Query: 745  SPIKNDINEPYILNPSTI-----------------------DTKGKTNLESLLSDNQTFN 781
             P  ND  +P   + S +                        T  +    S     +   
Sbjct: 988  YPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANE 1047

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLENPMMT 838
             G ++H ++Q +    E   +  +  Y     +  +  A   K++    I   + + + +
Sbjct: 1048 IGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYS 1107

Query: 839  TAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---H 887
                +   Y E+          ++    +D+ II G ID I +     +  +YKT     
Sbjct: 1108 IIAEAEQIYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNR 1167

Query: 888  HVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
                  E     +   +  Q+  Y+  L+    NK +   L +     +
Sbjct: 1168 RRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFKFGTL 1215


>gi|226947672|ref|YP_002802763.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str.
            Kyoto]
 gi|254802143|sp|C1FSA8|ADDA_CLOBJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|226844297|gb|ACO86963.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str.
            Kyoto]
          Length = 1279

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 157/992 (15%), Positives = 321/992 (32%), Gaps = 150/992 (15%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    +     +++  +      +L+ + + +     +     ++ S  A   L    + 
Sbjct: 288  KDADKEAKERVKKLRDRVKKRIIELRITLNSYENEFTKKEFIFLYPSMKALSNLVILFDK 347

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSL 190
             YE  K++  ++DF D+      +L         + + I     ++   +LIDE QD++L
Sbjct: 348  KYEAKKRERDLIDFNDIEHLCLSILTDKNSEGHIIPSDIALNYRKKFAEVLIDEYQDSNL 407

Query: 191  IQWEVIRSLTEDFFVGKNTHS------------------SPRTLFAVGDEKQSIYSFHGA 232
            +Q  ++  ++         +                        F VGD KQSIY F  A
Sbjct: 408  VQEVIMSMVSRVKGYWSFYNGQLIFNEEEINLEEPQIGLDIPNRFMVGDVKQSIYRFRQA 467

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P+  L +           G K   ++L  +FRS  +++  V+ +F    +      D T
Sbjct: 468  KPEIFLDKYNEYS---EEEGTKNRKVKLFKNFRSREEVINGVNYLFKQIMSKTIGELDYT 524

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                 +              ++          ++       D      +  +  R +A  
Sbjct: 525  EEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDEEEALDNIQLEGRLVAKK 584

Query: 353  ISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            I  ++G +            G+ R +Q +DI++L+R   +   +            I V 
Sbjct: 585  IQKLVGNNLEGGLKVFDRKLGEYRNLQYRDIVILMRATSNWAPV---FVEELAKEGIPVF 641

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-------- 457
             +      D   IK +++L + I +   D+  + +L+SP+ +F++D++  I         
Sbjct: 642  ADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASFTDDELIDIRMVNKNITF 701

Query: 458  ----------TQRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQ 496
                       +  + ++ Y +  +  N      +             I+ +      + 
Sbjct: 702  YECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKNKICSFIEKLKLWREKSI 761

Query: 497  FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554
                 +F   +           + + G +    L        +  + SY  L   I+ + 
Sbjct: 762  HIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQYAKTSYKGLFNFINFIN 821

Query: 555  ----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                        +    N N VRIM++H +KGLE PVV L  TG         K +    
Sbjct: 822  KLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGTGKNFNMMDLNKNILFHR 881

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             L   P       +    + + + +   ++  T  E  R+LYV +TRA ++LII    N 
Sbjct: 882  DLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLIITGLINN 941

Query: 671  SNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKLTN---------S 703
             ++   +                   +T+ D +  +    +     +             
Sbjct: 942  MDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDAVSFREELKMTSELSNIV 1001

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI------------ 751
             +K +W    W+        +E +E       ++ +     S  K +I            
Sbjct: 1002 DDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESDYKEEIYKRLSFKYKYDN 1061

Query: 752  --NEPYILNPSTID------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
              + P  L+ S +                      K              RG IIH  +Q
Sbjct: 1062 ASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEKKKISPSERGTIIHLFMQ 1121

Query: 792  VIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYS 847
             +       E   K  I     +    +   +  +    I +     +    + S +   
Sbjct: 1122 HLDLKKAENEEDIKEQINRLIEREFITYEQSKVISSYK-ILKFCRGELGKRILNSNNVNK 1180

Query: 848  EVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
            E+  S +I                + +II G ID     +  + + +YKT +    +IE 
Sbjct: 1181 EMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGLVLLDYKTDYV--NDIEE 1238

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            I   +  Q+  YE+ L      K++    +Y+
Sbjct: 1239 IKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269


>gi|168334042|ref|ZP_02692261.1| Recombination helicase AddA [Epulopiscium sp. 'N.t. morphotype B']
          Length = 1186

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 153/994 (15%), Positives = 311/994 (31%), Gaps = 105/994 (10%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
               +  DL        + + + + ++ +   P     +      + ++     F+ + S 
Sbjct: 210  EASLAADLRLELESIQTLLERALVIAKKPNGPLHYADSIGFNLQNLSKMDLSSFANIVSA 269

Query: 73   FLT---QKFTPQKNIITQEINKKSPDL-------KEKLKKSQDEFIKIRDRFNTYKMFKS 122
                     + ++      +   +  L        + L+ +            T  +   
Sbjct: 270  LANCNIAALSRKRPACDLSLKDAAKSLSSTATSRLKYLQDNYAILADPTVISKTASISTI 329

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQEIN 178
                  L       Y E K+   VLDF DL      LL            +  ++ +  +
Sbjct: 330  FKELARLVTTFETRYSEKKQDLGVLDFNDLEHYAIKLLVTESDGALAPTTVAKELGKYYS 389

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             I IDE QD + +Q  ++ ++           ++  T F VGD KQSIY F  + PK  L
Sbjct: 390  EIYIDEYQDVNDVQETILSAIA----------TNGATRFMVGDIKQSIYKFRLSNPKIFL 439

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             +    Q+ +  A      I+L  +FRS A IL   +++F                 R  
Sbjct: 440  DKYNRFQQFSPTAAADIR-IDLSHNFRSRAIILDAANEIFERLMRPAVGDLIYDQAQRLY 498

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R       +      +    + +  + S     D+    + A + A  IA  + +++ 
Sbjct: 499  AGR-------EYATFDETAKQCELHLLELSTLDADDAEEPSNKAELEAAMIAKIVKDILD 551

Query: 359  TD------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
             +              R ++ +DI +LVR +  +               +          
Sbjct: 552  GNSNPKIVYDKDLDIYRAVEPRDIAILVRAKAVSTAFENAL----YKVGVDAYAEISKSF 607

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
             +   ++ ++   + I +   D+ F+ +L S L     D++ +I T      + Y     
Sbjct: 608  FEATEVELMINFLKIIDNINQDIPFLSVLHSSLLGLDFDELSEIRTYA--DGSFYNACVA 665

Query: 473  FAN-CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530
            +      SK       I     +++     +    +               G      L 
Sbjct: 666  YKQLHPHSKLADFFAEIEGFRKLSKMVPVSELIDQVFLQTGYLGYVSMLDHGAIRSANLR 725

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585
                  +  EQN+   L   +  LEQ           ++    +N V+IM++H +KGLE 
Sbjct: 726  ILKQTAIDFEQNTKVGLFNFLIFLEQLRNDEASIQQAKSAVDQNNTVKIMSIHKSKGLEF 785

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            P+V L +   +    +  + + +   L                      +   +      
Sbjct: 786  PIVILANAHKRFNQMETYQPILLHNQLGLGAQFRDMEKYVDYTTLPYLAIKNKIFNENIS 845

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNE------------------KKSNQRTWYDMVYD 687
            E  R+LYV +TRA ++LI+   +N+ +                   +  N    + ++  
Sbjct: 846  EEIRILYVALTRAKEKLIVTAVTNSFDSLLSNALLHATEHIDSIFIRNQNSYLNWIILAL 905

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK------ 741
            + +     + +   N+    +WI  ++S     +   +  E        Q I        
Sbjct: 906  AHNPYTLTESVANFNAGTMGQWIIKQYSRLSFADADADFVEPPSSNEVIQDIFDLIATDT 965

Query: 742  -------------KLFSPIKNDINEPYILNPSTIDTK-----------GKTNLESLLSDN 777
                                 D   P  ++ S + TK                    S  
Sbjct: 966  SSNSLKDEIFAKLDYEYRHILDTTLPQKISVSELKTKMSDSISSAPYSSNIPKFIASSSY 1025

Query: 778  QTFNRGLIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
               + G IIH + Q +  L        +  I S   +N          N+   +     +
Sbjct: 1026 DGLSHGNIIHAVFQHLDYLKYTDHTSIRQNIESMIAQNKLAKNTLAIANI-DRLVSFANS 1084

Query: 835  PMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
             ++     +  S+ E     ++   +   +ISG +D        I I +YKT        
Sbjct: 1085 AIINRMRKAAFSFKEQPFLYQLPQSEGRSLISGIVDAYFEENGKIIIIDYKTDSTKAHTK 1144

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
              I   +  Q+  Y + L++   +K +    +Y+
Sbjct: 1145 IEIVDRYRLQIQWYSEALQNI-THKVVTERYLYL 1177


>gi|21282578|ref|NP_645666.1| hypothetical protein MW0849 [Staphylococcus aureus subsp. aureus MW2]
 gi|300912474|ref|ZP_07129917.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            TCH70]
 gi|81762665|sp|Q8NXE9|ADDA_STAAW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|21204016|dbj|BAB94714.1| MW0849 [Staphylococcus aureus subsp. aureus MW2]
 gi|300886720|gb|EFK81922.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            TCH70]
          Length = 1217

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 156/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEI 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    +          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|293368345|ref|ZP_06614973.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus epidermidis
            M23864:W2(grey)]
 gi|291317592|gb|EFE58010.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus epidermidis
            M23864:W2(grey)]
          Length = 1224

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 153/944 (16%), Positives = 307/944 (32%), Gaps = 129/944 (13%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
             K   L  K+K           + +  ++         + + +   +   K+   +LDF 
Sbjct: 313  DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAHRVAYLAQIVQDVIQSFGVQKRSRNILDFS 372

Query: 151  DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D       +L   D   + I     +    IL+DE QDT+ +Q +++  +       K  
Sbjct: 373  DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 425

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  LF VGD KQSIY F  A+P   + +        T +G     I+L  +FRS  +
Sbjct: 426  EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGTESGL---RIDLSQNFRSRQE 482

Query: 270  ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +L+  + +F     E    +S D    +   +        VQL   + +  ++       
Sbjct: 483  VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALIEASSEN------- 535

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385
                        + +   A  I   + ++I    ++    G+ R    KDI++L R    
Sbjct: 536  ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 586

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                    +    +  I    N +    +   ++ +++  R I +   D+  V +++S +
Sbjct: 587  ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 642

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
            + F+E+++ KI       +  Y+ I+ +            K    I+ I +  + +Q   
Sbjct: 643  YQFTEEELAKIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 702

Query: 500  PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
             +             Q F    G +     L    N  +  E +S+  L + I  +++  
Sbjct: 703  VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 762

Query: 559  PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
               K     N      N VR+MT+H++KGLE P V       +         + +     
Sbjct: 763  DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 822

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN- 672
                           +          +K    E  RL+YV +TRA +QLI+         
Sbjct: 823  LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 882

Query: 673  ----------------------------------EKKSNQRTWYDMVYDSFHNDERVKKI 698
                                              + +S                    K 
Sbjct: 883  LIKYEKLAVSDTHIAVNERLTATNPFVLIYGILAKHQSPSLPNDQRFERDIDQLNSEVKP 942

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE--QKIPKKLFSPIKNDINEPYI 756
            +++  I+  E ++ E   +  E   +E  + I    ++   KI ++L       +N    
Sbjct: 943  RVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKP 1002

Query: 757  LNPSTIDTKGKTNLES-------------------------LLSDNQTFNRGLIIHKLLQ 791
               S  + K +   E                               +    G ++H ++Q
Sbjct: 1003 SKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQ 1062

Query: 792  VIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYS 847
             +    +   K+ +  Y     + +L      +++ +  I   ++ P+      + + Y+
Sbjct: 1063 HLPFREQRLTKDELLQYIDGLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYT 1122

Query: 848  EVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE-- 894
            E+           +    +D+ II G ID I  S    +  +YKT          + E  
Sbjct: 1123 ELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIG 1182

Query: 895  -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
              +   +  Q++ Y   L+     + +   L +     +  I  
Sbjct: 1183 NQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1224


>gi|298694207|gb|ADI97429.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            ED133]
          Length = 1217

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 157/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    ++ D +  + + +   
Sbjct: 456  TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSKLYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|227510906|ref|ZP_03940955.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri
            ATCC 11577]
 gi|227085858|gb|EEI21170.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri
            ATCC 11577]
          Length = 1254

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 148/1006 (14%), Positives = 309/1006 (30%), Gaps = 146/1006 (14%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
              L+Q          F  ++   LT+     +  + + +   +  +K++ +K    +   
Sbjct: 273  DGLRQLITGFD----FESMTKAKLTKDADEHQKQVHKLVKGTNDQMKKQWQKLVTGYFAW 328

Query: 111  RDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-RDVS 166
             ++ N              +T+ +   A Y++AK +  ++ F D+     D+L    + +
Sbjct: 329  NEQDNVDLMNAAKARIEKLVTVVRTFRAAYKQAKARRHLMQFIDIEHAAYDILNDVSEQA 388

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +R ++  +   I+ DE QD + +Q  ++  +           S     F VGD KQSI
Sbjct: 389  KQVRQRLQDQYYEIMTDEYQDNNRLQDAILNKIA---------RSDRGNRFMVGDVKQSI 439

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ- 285
            Y F  A+P   ++++    ++  +       I L  +FRS  +I    + VF    + + 
Sbjct: 440  YRFRLADPTMFIKKQAQYIEQDNDNEL----ISLSENFRSAKNIDDFTNLVFEQTMDHRV 495

Query: 286  -GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
              ++    + ++  ++         +   +     S      E   +       +S    
Sbjct: 496  GDIAYTGKSKLQFGATYYPDDMKADVSLIIYRTKSSAAATSNEDLGAGDQIEDSDSGQ-- 553

Query: 345  LARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             A  IA  I  ++    +  + K    R +   DI ++     +          +   Y 
Sbjct: 554  -AEIIAQKIRTLVDDKQLIYDKKLEEMRPVTFDDIAIISPTHNN----ELTLSDIFTQYG 608

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            I               I+ +M+L   I +   D++ V +L SP+    E+ +  +   R+
Sbjct: 609  IPAEITGAKSYFKTTEIQIMMSLLSIIDNPFQDIALVAVLHSPIVGLDENQLAFLRINRN 668

Query: 462  ETETVYE-----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                                  +A     K    +K +     +AQ          I   
Sbjct: 669  TGNYYQAVLDFYRGFDRLEPNDYATRIYQKVDRFMKQLRRFKDVAQQDGLVSLIWDIYDQ 728

Query: 511  KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
                        G +    L    +     E+N +  L + +  +++             
Sbjct: 729  TGYLDYVGGMPAGLQRQTNLHALYDRAADYEKNGFKGLFQFVKFIQRMQERDNDLANANP 788

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            + + N V +MT+H +KGL+ P+VFL D G Q      I K  +               + 
Sbjct: 789  TTSENTVHVMTIHGSKGLQFPIVFLNDVGKQFNMQDTIGKYVLNDHWGIGIDYLNNQTRE 848

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----------- 674
                     ++   K +   E  R LYV MTRA  +L +                     
Sbjct: 849  FRSPLQKQAILDMTKNAGLSEEMRKLYVAMTRAEQRLYLVAKVKGEKSGDNQQLIQGWQG 908

Query: 675  -------------KSNQRTWYDMVYDSFHNDERV----------------KKIKLTNSIN 705
                         ++  +++   +  +      V                  +   +  +
Sbjct: 909  LTDANELVLPAAVRNAAKSYLGWIGPAISRHPNVLDRFGDSIHSNVLAGDPTLFNLDFYD 968

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--------LFSPIKNDINEPYIL 757
             +            + +P +  + + Q       P K           P           
Sbjct: 969  DERITKESGRQKANQTSPNDFIDQLAQKKLTVAQPTKAAISQVMTFKYPHTAATKTTAYQ 1028

Query: 758  NPSTIDTKGKTN--------------------------------LESLLSDNQTFNRGLI 785
            + S I                                       +            G  
Sbjct: 1029 SVSEIKRLFDDPDNTQLSGYSTLDVNKLAKTGRYLKTDFEVPQFISEGGGKPAPTEIGTA 1088

Query: 786  IHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS- 842
             H +LQ I   T+P  +R   + +   K   + P    +  +  + R  ++ +    ++ 
Sbjct: 1089 THLVLQQIDLTTVPTIERIEALIANLLKQQVISPEVASQINVDEVLRFYQSEVGKYVLAN 1148

Query: 843  -CDSYSEVSVSG---------KINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
              +++ E   S                +  I+I G ID    + + +++F+YKT H  P+
Sbjct: 1149 PENTHREAPFSLLMKARDVFKDFQDNDEQTILIHGIIDGYVATNEAVYLFDYKTDHITPK 1208

Query: 892  -EIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935
              I  I   +  QL +Y   L      + +    L  +S  +   +
Sbjct: 1209 TTISDIVDRYRGQLELYGLALSKIL-GRPITHKYLYLLSANQAVQV 1253


>gi|226314559|ref|YP_002774455.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599]
 gi|226097509|dbj|BAH45951.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599]
          Length = 1275

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 144/1061 (13%), Positives = 332/1061 (31%), Gaps = 143/1061 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G++      ++       P   +  +    +              +   +A+        
Sbjct: 233  GMTAKMRRAVLLAGSPEGPAGYLPLLEAEAAALHRA-----GAACRAGWEATVEAVRGVV 287

Query: 66   FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            F+ L     T     ++  ++      + +  +++      ++++    R     +    
Sbjct: 288  FAKLPPVKGTDPLVKEQVQDLRNSVKKELAEQIEQYFSTPAEQYVADLQR-----IAPHM 342

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEIN 178
                 L    +  Y+  K+   ++DF DL      +L +     + V + I  ++ ++  
Sbjct: 343  QTLARLVTAFSDAYQLEKRLRGLVDFGDLEHLALRVLTETNESGKTVPSSISTQLREQFA 402

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             +L+DE QD +L+Q  +++ ++ D       +  P   F VGD KQSIY F  AEPK  L
Sbjct: 403  EVLVDEYQDINLVQETILQMVSRD-----GANGQPANRFMVGDVKQSIYRFRLAEPKLFL 457

Query: 239  REKRINQKRATNAGQK-FSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTI 295
             +    QK            I+L  +FRS  +++  V+ +F    +     +  D +  +
Sbjct: 458  EKYVTYQKDGDADEACIGRRIDLAANFRSRREVVDAVNFLFRQIMSHGVGEIGYDPSAEL 517

Query: 296  RHRSSRIGQV-----------GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
             +R+S                    +         ++   + E+     +S  + S A +
Sbjct: 518  INRASYPEAQPNRLQAEMHLIDRNTVIADEGQAVVAEATDEGEAGIPDGESAEEASVAQL 577

Query: 345  LARRIAYTISNMIGTDTIFS--------NGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
             AR IA  I   +                G  R +  +DI++L+R            +  
Sbjct: 578  EARLIASRIRRWMEPGEGEEPLLVFDKKAGGMRPLAYRDIVILLRATSG---WGQTMQEE 634

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
             +   I V             ++ +++L R I +   D+    +L+SP+    E  + +I
Sbjct: 635  LHAAGIPVYAEQTAGYFAATEVETMLSLLRVIDNPLQDIPLAAVLRSPIVGLREQQLAQI 694

Query: 457  CTQRHETETV-----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                           Y   +        + +     +      A+  +  +  T++    
Sbjct: 695  RIHYATGPFHQAVLQYAEERPPQESWEKRLRQFFGRLGLWRTEARRGALSELLTMLYRET 754

Query: 512  KGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS---- 566
                   +   G +    L    +   + E  SY  L   +  +++              
Sbjct: 755  GYLDYVAALENGQQRQANLRALYDRARQYEAGSYRGLFRFLRFVDRLQEAGNDMGEARTI 814

Query: 567  -ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              N + VRIMT+H +KGLE PVVF+   G Q  +     +  +   L   P       Q 
Sbjct: 815  GENEDVVRIMTIHKSKGLEFPVVFVAGMGKQFNTMDLKSQFLLHKDLGFGPMAVEPSMQL 874

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK-----------HSNTSNEK 674
            +  +     + + L++    E  R+LYV +TRA ++LI+                  + +
Sbjct: 875  RYPSLAALGIRQKLRRDMLAEEMRVLYVALTRAREKLILVGSSKDLAKSVTDWGRQDDSE 934

Query: 675  KSNQRT------WYDMVYDSFHNDERVKKIKLTNSINK----------DEWIAYEWSTHH 718
            + +         + D V  +         ++                  +   + +  + 
Sbjct: 935  RLSDEDLIQAKGYLDWVGRAMLRHPGAGLLRAYPEQQGSGDVVRVRSVPDDSVWSFHFYQ 994

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS--- 775
             +    + E    +    +++ ++     +   +    +    +  +    +   ++   
Sbjct: 995  ADELRAQGESANHEASLWERMTRREAIAERPSDDILREIVEKRLGWQDPHPIAPRVAAKW 1054

Query: 776  ------------------------------------DNQTFNRGLIIHKLLQVIFTLPEH 799
                                                      +G I H + Q +      
Sbjct: 1055 SVSELKRHAKVSKGGQPLTLPSITEKPKFLSEQKSNRLTAAEKGTITHLVFQHLDLKRPL 1114

Query: 800  KRKNFITS--YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKIN 856
               +          +  L   +     +  I R   +P+     S    + E+  +  + 
Sbjct: 1115 DEADIREQVTALAAHRFLTDEQVQAVDVPQIARFFADPLGQRMKSAAVVHRELPFTLVLP 1174

Query: 857  C----------PKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ----EIEHIPYTHI 901
                         + +++ G ID +       + + ++KT     +     +E +   + 
Sbjct: 1175 AYEVEAELGEESDEQVVVQGVIDCLLEEPDGSLVLIDFKTDWMAKEATAVAMEEMKRRYE 1234

Query: 902  AQLSIYEKILKDSY-PNKSLVCLLIYVSEPKVFIIPQNKLN 941
             Q+ +Y + +K    P  ++   L  +S           ++
Sbjct: 1235 GQIRLYVRAIKQIIKPKGNVSSYLYLLSGGFSLSFSDESMD 1275


>gi|307704790|ref|ZP_07641686.1| recombination helicase AddA [Streptococcus mitis SK597]
 gi|307621699|gb|EFO00740.1| recombination helicase AddA [Streptococcus mitis SK597]
          Length = 1216

 Score =  364 bits (933), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 155/1031 (15%), Positives = 330/1031 (32%), Gaps = 141/1031 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQ 60
            K  F    N+  E I + LW L  F    ++              +      +   +Q  
Sbjct: 228  KADFNSEKNKLTEQIKQALWDLESFFRYHLDNDAKEFPKAAYLENVQLVLDEIGSLNQES 287

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNT 116
              +   ++L       K    + +           L +   + +     +  ++ D+   
Sbjct: 288  DSQAYQAVLVRVVAISKEKNGRALTNASRKADLKPLVDAYNEERKAQFAKLGQLSDQITI 347

Query: 117  YKMFKS--------TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                +                       Y + K++    +F D+   T ++L+       
Sbjct: 348  LDYQERYHGDTWKLAKTFQAFMSDFVEAYRQRKRQENAFEFADISYYTIEILENFP---Q 404

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +R    +  + +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY 
Sbjct: 405  VREAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYR 453

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F  A+P+    + +   +      ++  +I L  +FRS++++L+  + VF    + +   
Sbjct: 454  FRQADPQIFNEKFQRYVQ----NPKEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGE 509

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             +     +   +                 + ++     +  +S  +    E+  +   R 
Sbjct: 510  INYDNMHQLVFANTKL--------TSNPDNKAEFLLYDKDDSSEEEESQAETKLTGEMRL 561

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +   I  +            + +  K+I +L   R              ++Y I V  + 
Sbjct: 562  VIKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDG 608

Query: 409  RFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                    L ++ ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +   
Sbjct: 609  EQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVQE 668

Query: 468  EYIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
               +K  N                  K    +  +      A+  S +D    I   +  
Sbjct: 669  NLYEKLVNAQKLATSQKNLIHTDLAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFY 728

Query: 514  RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSAN 568
                 +   G      L        + E++++  L   I  ++Q           A +  
Sbjct: 729  YDYVGALPNGPARQVNLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPP 788

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             + V +MT+H +KGLE P VF+++          + ++ +             +      
Sbjct: 789  KDAVELMTIHKSKGLEFPYVFILNMDKDFNKQDSMSEVILSRKNGLGVKYIAKMETGAVE 848

Query: 629  NNI------------VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-- 674
            ++                  + L+ ++  E  RLLYV MTRA  +L +    +    +  
Sbjct: 849  DHYPKTIKLSIPSLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAK 908

Query: 675  -----------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                               N + W   +   F  D      +  +          +    
Sbjct: 909  EYPAAKNGKLNSNTRLQARNFQDWMWAINKVFAKDNLNFSYRFVSEDQLTRETIGQLENK 968

Query: 718  HP----ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----- 768
             P          + E IK+ ++  K  +   +  +  I  P +  PS I    +      
Sbjct: 969  SPLQDSSQADNRQSEIIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDME 1028

Query: 769  -------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
                                  S          G   H+L+Q I      +R    +   
Sbjct: 1029 GVEIASQGQSVDKKISFDLPDFSTKEKVTGAEIGSATHELMQRID---LSQRPTLASLTE 1085

Query: 810  TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIII 864
            T             + L       +  +    ++     Y E   S   +    ++D ++
Sbjct: 1086 TLKQVQTSPAVRDKINLAKTLAFFDTALGQEILANTNHLYREQPFSMLKRDPKSQEDFVV 1145

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
             G +D   + +  I +F+YKT  +   E   +   +  QL++Y + L  +Y  +++   L
Sbjct: 1146 RGILDGYLLYEDKILLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYL 1203

Query: 925  IYVSEPKVFII 935
            I + + +V ++
Sbjct: 1204 ILLGKDEVQVV 1214


>gi|253732675|ref|ZP_04866840.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
            aureus TCH130]
 gi|253729286|gb|EES98015.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
            aureus TCH130]
          Length = 1217

 Score =  364 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 159/1009 (15%), Positives = 311/1009 (30%), Gaps = 149/1009 (14%)

Query: 28   VSDINKYVSLSMETGN-----PTILKKAQTL--QQASQTQCIEERFSLLSSFFLTQKFTP 80
            + D  + +   +E G       T  +    L    A   +  E     L    L  ++  
Sbjct: 252  IEDERRLMGRVLEGGFIDIPYLTDHEFGARLPNVTAKIKEANEMMVDALEDAKL--QYKK 309

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
             K++I +  +       + LK    +                      + K + + +   
Sbjct: 310  YKSLIDKVKSDYFSREADDLKADMQQL------------APRVKYLARIVKDVMSEFNRK 357

Query: 141  KKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K+   +LDF D       +L   D   + I     Q    IL+DE QDT+ +Q +++  +
Sbjct: 358  KRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCI 417

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                   K        LF VGD KQSIY F  A+P   + + +         G     I+
Sbjct: 418  -------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTG---RRID 467

Query: 260  LPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            L  +FRS  ++L+  + +F     E    +  D    + + +        V L   V + 
Sbjct: 468  LSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEAD 527

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKD 375
             +                    + +   A  I   + +++    ++    G  R    KD
Sbjct: 528  QEH----------------SDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKD 571

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I++L R            +    +  I    N R    +   ++ +++  R I +   D+
Sbjct: 572  IVILERSFGQAHN----LQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDI 627

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIH 489
              V +++S ++ F ED++ +I       +  Y+ I  + N          K +  +  I 
Sbjct: 628  YLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQ 687

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQ 548
                 ++    +             Q F    G       L    N  +  E +S+  L 
Sbjct: 688  SYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLY 747

Query: 549  ELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + I  +++     K     N      N VR+MT+H++KGLE P V               
Sbjct: 748  QFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLK 807

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            + + +               +    +          +K    E  RL+YV +TRA +QL 
Sbjct: 808  QPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEMRLVYVALTRAKEQLY 867

Query: 664  ICKHSNTSNE---------------------KKSNQRTWYDMVYDSFHN--DERVKKIKL 700
            +                                +     Y ++         + +K  K 
Sbjct: 868  LIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKD 927

Query: 701  TNSINKDEWIAYEWSTHHPENTPLER----------------EETIKQLMDEQKIPKKLF 744
               +          S  + E+   E                 +   + +  + K      
Sbjct: 928  IAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNGNEDVKAQIKHQLDYQ 987

Query: 745  SPIKNDINEPYILNPSTI-----------------------DTKGKTNLESLLSDNQTFN 781
             P  ND  +P   + S +                        T  +    S     +   
Sbjct: 988  YPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANE 1047

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLENPMMT 838
             G ++H ++Q +    E   +  +  Y     +  +  A   K++    I   + + + +
Sbjct: 1048 IGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYS 1107

Query: 839  TAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---H 887
                +   Y E+          ++    +D+ II G ID I +     +  +YKT     
Sbjct: 1108 IIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNR 1167

Query: 888  HVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
                  E     +   +  Q+  Y+  L+    NK +   L +     +
Sbjct: 1168 RRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFKFGTL 1215


>gi|57866488|ref|YP_188146.1| exonuclease RexA [Staphylococcus epidermidis RP62A]
 gi|81675092|sp|Q5HQJ4|ADDA_STAEQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|57637146|gb|AAW53934.1| exonuclease RexA [Staphylococcus epidermidis RP62A]
          Length = 1218

 Score =  364 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 152/944 (16%), Positives = 307/944 (32%), Gaps = 129/944 (13%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
             K   L  K+K           + +  ++         + + +   +   K+   +LDF 
Sbjct: 307  DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 366

Query: 151  DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D       +L   D   + I     +    IL+DE QDT+ +Q +++  +       K  
Sbjct: 367  DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  LF VGD KQSIY F  A+P   + +          +G     I+L  +FRS  +
Sbjct: 420  EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 476

Query: 270  ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +L+  + +F     E    +S D    +   +        VQL   V +  ++       
Sbjct: 477  VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 529

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385
                        + +   A  I   + ++I    ++    G+ R    KDI++L R    
Sbjct: 530  ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                    +    +  I    N +    +   ++ +++  R I +   D+  V +++S +
Sbjct: 581  ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
            + F+E+++ +I       +  Y+ I+ +            K    I+ I +  + +Q   
Sbjct: 637  YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696

Query: 500  PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
             +             Q F    G +     L    N  +  E +S+  L + I  +++  
Sbjct: 697  VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756

Query: 559  PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
               K     N      N VR+MT+H++KGLE P V       +         + +     
Sbjct: 757  DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN- 672
                           +          +K    E  RL+YV +TRA +QLI+         
Sbjct: 817  LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 876

Query: 673  ----------------------------------EKKSNQRTWYDMVYDSFHNDERVKKI 698
                                              + +S                    K 
Sbjct: 877  LIKYEQLAVSDTHIAVNERLTATNPFVLIYGVLAKHQSPSLPNDQRFERDIDQLNSEVKP 936

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE--QKIPKKLFSPIKNDINEPYI 756
            +++  I+  E ++ E   +  E   +E  + I    ++   KI ++L       +N    
Sbjct: 937  RVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKP 996

Query: 757  LNPSTIDTKGKTNLES-------------------------LLSDNQTFNRGLIIHKLLQ 791
               S  + K +   E                               +    G ++H ++Q
Sbjct: 997  SKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQ 1056

Query: 792  VIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYS 847
             +    +   K+ +  Y  +  + +L      +++ +  I   ++ P+      + + Y+
Sbjct: 1057 HLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYT 1116

Query: 848  EVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE-- 894
            E+           +    +D+ II G ID I  S    +  +YKT          + E  
Sbjct: 1117 ELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIG 1176

Query: 895  -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
              +   +  Q++ Y   L+     + +   L +     +  I  
Sbjct: 1177 NQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1218


>gi|329730541|gb|EGG66929.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis
            VCU144]
          Length = 1218

 Score =  364 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 152/944 (16%), Positives = 307/944 (32%), Gaps = 129/944 (13%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
             K   L  K+K           + +  ++         + + +   +   K+   +LDF 
Sbjct: 307  DKYKSLVMKVKNDYFSRNTEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 366

Query: 151  DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D       +L   D   + I     +    IL+DE QDT+ +Q +++  +       K  
Sbjct: 367  DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  LF VGD KQSIY F  A+P   + +          +G     I+L  +FRS  +
Sbjct: 420  EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 476

Query: 270  ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +L+  + +F     E    +S D    +   +        VQL   V +  ++       
Sbjct: 477  VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 529

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385
                        + +   A  I   + ++I    ++    G+ R    KDI++L R    
Sbjct: 530  ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                    +    +  I    N +    +   ++ +++  R I +   D+  V +++S +
Sbjct: 581  ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
            + F+E+++ +I       +  Y+ I+ +            K    I+ I +  + +Q   
Sbjct: 637  YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696

Query: 500  PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
             +             Q F    G +     L    N  +  E +S+  L + I  +++  
Sbjct: 697  VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756

Query: 559  PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
               K     N      N VR+MT+H++KGLE P V       +         + +     
Sbjct: 757  DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN- 672
                           + +        +K    E  RL YV +TRA +QLI+         
Sbjct: 817  LGMDYFDVNKDMAFPSLVSVAYRAINEKELISEEMRLTYVALTRAKEQLILVGRVKDEKS 876

Query: 673  ----------------------------------EKKSNQRTWYDMVYDSFHNDERVKKI 698
                                              + +S                    K 
Sbjct: 877  LIKYEQLAVSDTHIAVNERLTATNPFVLIYGVLAKHQSPSLPNDQRFERDIDQLNSEVKP 936

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE--QKIPKKLFSPIKNDINEPYI 756
            +++  I+  E ++ E   +  E   +E  + I    ++   KI ++L       +N    
Sbjct: 937  RVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKP 996

Query: 757  LNPSTIDTKGKTNLES-------------------------LLSDNQTFNRGLIIHKLLQ 791
               S  + K +   E                               +    G ++H ++Q
Sbjct: 997  SKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQ 1056

Query: 792  VIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYS 847
             +    +   K+ +  Y  +  + +L      +++ +  I   ++ P+      + + Y+
Sbjct: 1057 HLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYT 1116

Query: 848  EVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE-- 894
            E+           +    +D+ II G ID I  S    +  +YKT          + E  
Sbjct: 1117 ELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIG 1176

Query: 895  -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
              +   +  Q++ Y   L+     + +   L +     +  I  
Sbjct: 1177 NQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1218


>gi|257875815|ref|ZP_05655468.1| UvrD/REP helicase [Enterococcus casseliflavus EC20]
 gi|257809981|gb|EEV38801.1| UvrD/REP helicase [Enterococcus casseliflavus EC20]
          Length = 1225

 Score =  364 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 150/1018 (14%), Positives = 314/1018 (30%), Gaps = 131/1018 (12%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                       +  ++ +  + +    T L   +TL+       ++  +  + +    + 
Sbjct: 235  AAHLLQAAQDYARSDEAMEKAAQL-IDTELGMVETLKALLDADDVDGFYEQIQTLRFGRY 293

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD------RFNTYKMFKSTLASLTLAK 131
               +K    +E++++   L++  KK  ++                ++          + +
Sbjct: 294  PAFRK-PEQKELSQEIKPLRDDAKKLVEQLKATFPYPPAEMMELLHRSAPVVEKMAAMTE 352

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                 ++E K     LDF DL   T  +L+     +            +L+DE QD + +
Sbjct: 353  AFMKAFQERKLSKGRLDFNDLEHFTLQILQGDGSGSEASTYYRDRFEEVLVDEYQDVNRL 412

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q  ++  + +          +P  +F VGD KQSIYSF  A+P   + +    +      
Sbjct: 413  QEAILYWVRQ-------VDHNPGNMFMVGDVKQSIYSFRLADPTLFIEKYLAFET----- 460

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                  I L  +FRS +D+L   + VF    + +             +       +    
Sbjct: 461  ENGGRRIVLAENFRSRSDVLDFTNLVFQQLMDERVGQIPYDEAAALITGFPDFPESEAFA 520

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---K 368
             +++       + +Q            +       +  A  I  +I ++ +  + K    
Sbjct: 521  TELLLYEKEHESEEQLI----------DDKTEGEMQITALKIRELIESNFMIYDKKAKTN 570

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R I   DI++L   RK+  +I  + +     + I +  ND         I+ +++L + I
Sbjct: 571  RPITYNDIVLLTPTRKNNLVILDVFK----QFGIPMAVNDAQNYFQATEIQTVVSLLQII 626

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH----V 484
             +   D+  V +L+SP+   +ED + +I      ++     +        S         
Sbjct: 627  DNPYQDIPLVAVLRSPIVGLTEDQLAEIRLANRSSDYYDAVLDYHGQQEASPLWQTVDGF 686

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543
            +  + +    A+          I          +    G +    L   ++   + E++S
Sbjct: 687  LTKLEQWREEARRLPIPTLLWQIYEDTAYLDYVVGLPAGQQRYANLAALVHRAEKYEKSS 746

Query: 544  YSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +  L + I  +E+     K           + VR+MTVH +KGLE PVVFL+DT      
Sbjct: 747  FRGLYQFIRFIEKMQEKNKDLAEPLATPVEDAVRVMTVHASKGLEFPVVFLLDTTKFFNY 806

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                K+      L             K        + +   K    E  R LYV +TRA 
Sbjct: 807  QDFQKRYIFEEQLGAGIQYVEPAENLKFETLPFQAIKQVRLKKALSEEMRKLYVALTRAE 866

Query: 660  DQLIICKHSNTSNE--------------------KKSNQRTWYDMVYDSFHNDERVKKIK 699
             +L +        +                    +   + +  D V  +      ++ + 
Sbjct: 867  QKLFLVGSYKNQADAFKTWQSGLTQSEMVLDPALRLVARGSLMDWVGRTLMRHPDMEAVF 926

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK---------------KLF 744
               S  K              N     +E  + L   ++  +                  
Sbjct: 927  SEASERKRTIDHPAHFRLSWWNQETITQEVQETLAPVEEPKRLIAPDSNIDDLLKRLAYR 986

Query: 745  SPIKNDINEPYILNPSTI--------------------------------DTKGKTNLES 772
             P +         + S +                                  +       
Sbjct: 987  YPYQKATQTTSYQSVSELKRLYNDPDDQQTTLLEWRSVSEKTNPQQYRYVQDELAKPKFL 1046

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS--ITR 830
              +     + G   H +LQ+I    +  +            K + ++E    +    I  
Sbjct: 1047 QETKPLASSIGTATHTVLQMIPLGMKPTQDTLALLIAELVKKQFFSEEIAKKIDRSSILW 1106

Query: 831  LLENPMMTTA--MSCDSYSEVSVSG---------KINCPKKDIIISGRIDQISISQQNIF 879
              +  +       S     E   S            + P   ++I G ID        I 
Sbjct: 1107 FYQTELGELLNQFSDVVKREQPFSMLKEADTIFEGFDEPDAPLLIHGIIDGYIELADEII 1166

Query: 880  IFEYKTHHHVPQE---IEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVF 933
            ++++KT      +    + +   +  QL +Y + L+ +  NK +    L+ +    + 
Sbjct: 1167 LYDFKTDDVFGSQAQIEQKMRERYYGQLKLYCQALEKAL-NKPVRQTYLVLLKPKMIV 1223


>gi|329734888|gb|EGG71188.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis
            VCU045]
          Length = 1218

 Score =  364 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 153/944 (16%), Positives = 307/944 (32%), Gaps = 129/944 (13%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
             K   L  K+K           + +  ++         + + +   +   K+   +LDF 
Sbjct: 307  DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAHRVAYLAQIVQDVIQSFGVQKRSRNILDFS 366

Query: 151  DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D       +L   D   + I     +    IL+DE QDT+ +Q +++  +       K  
Sbjct: 367  DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  LF VGD KQSIY F  A+P   + +        T +G     I+L  +FRS  +
Sbjct: 420  EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGTESGL---RIDLSQNFRSRQE 476

Query: 270  ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +L+  + +F     E    +S D    +   +        VQL   + +  ++       
Sbjct: 477  VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALIEASSEN------- 529

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385
                        + +   A  I   + ++I    ++    G+ R    KDI++L R    
Sbjct: 530  ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                    +    +  I    N +    +   ++ +++  R I +   D+  V +++S +
Sbjct: 581  ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
            + F+E+++ KI       +  Y+ I+ +            K    I+ I +  + +Q   
Sbjct: 637  YQFTEEELAKIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696

Query: 500  PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
             +             Q F    G +     L    N  +  E +S+  L + I  +++  
Sbjct: 697  VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756

Query: 559  PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
               K     N      N VR+MT+H++KGLE P V       +         + +     
Sbjct: 757  DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN- 672
                           +          +K    E  RL+YV +TRA +QLI+         
Sbjct: 817  LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 876

Query: 673  ----------------------------------EKKSNQRTWYDMVYDSFHNDERVKKI 698
                                              + +S                    K 
Sbjct: 877  LIKYEKLAVSDTHIAVNERLTATNPFVLIYGILAKHQSPSLPNDQRFERDIDQLNSEVKP 936

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE--QKIPKKLFSPIKNDINEPYI 756
            +++  I+  E ++ E   +  E   +E  + I    ++   KI ++L       +N    
Sbjct: 937  RVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKP 996

Query: 757  LNPSTIDTKGKTNLES-------------------------LLSDNQTFNRGLIIHKLLQ 791
               S  + K +   E                               +    G ++H ++Q
Sbjct: 997  SKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQ 1056

Query: 792  VIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYS 847
             +    +   K+ +  Y     + +L      +++ +  I   ++ P+      + + Y+
Sbjct: 1057 HLPFREQRLTKDELLQYIDGLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYT 1116

Query: 848  EVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE-- 894
            E+           +    +D+ II G ID I  S    +  +YKT          + E  
Sbjct: 1117 ELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIG 1176

Query: 895  -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
              +   +  Q++ Y   L+     + +   L +     +  I  
Sbjct: 1177 NQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1218


>gi|329733963|gb|EGG70285.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            21193]
          Length = 1217

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 156/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      + VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDSVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    +          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEHI----PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E I       +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQFKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|169831437|ref|YP_001717419.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
            audaxviator MP104C]
 gi|251764572|sp|B1I493|ADDA_DESAP RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|169638281|gb|ACA59787.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
            audaxviator MP104C]
          Length = 1230

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 152/1025 (14%), Positives = 299/1025 (29%), Gaps = 146/1025 (14%)

Query: 25   YFQVSDINKYVSLSMETGNPT---ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
               V ++   +  +   G P        A+    A     +   +  L + FL   FTP+
Sbjct: 227  EAAVFELRAALEAAKAPGGPAVYADALAAEVEGTARLAGLVAGDWEPLRAAFLAFGFTPR 286

Query: 82   KNIITQEINKKSPDLKEKLKK-SQDEFIKIRDRFNTYKMFKSTLASLTL----------A 130
                   ++++  DL  + +K +++    +++ F   +  +       L          A
Sbjct: 287  LPAARAGVDQELKDLCSRCRKKAKERIQNLKETFFARRPEELLSEMAALGPAMRRLAALA 346

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR------DVSAWIRYKIDQEINHILIDE 184
                  Y  AK    ++DF DL      +L          V + +   + +    +L+DE
Sbjct: 347  ADFGEAYRTAKLARNLVDFADLEHYCLQILLAPGSTPEAPVPSPVAAGLREYYVEVLVDE 406

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QD + +Q  ++R ++               LF VGD KQSIY F  AEP   L + R  
Sbjct: 407  YQDINAVQETILRLVSRQDAA-------APNLFMVGDVKQSIYRFRLAEPALFLEKYRAF 459

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR-----S 299
                   G     I+L  +FRS   I+  V+ VF              T          +
Sbjct: 460  DTGEDAGG--ARRIDLSHNFRSRESIIHAVNAVFRRIMTPAVGELAYDTAAELVCGGTPA 517

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
               G    V++          +                  ++    AR +A  I  +   
Sbjct: 518  QLEGSGPPVEVHLLGAPTSVGRDTAGTADDEPDRSDEADLTAVQREARLVAGIIRRL--- 574

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                  G +  +  +DI+VL+R                    I           + + ++
Sbjct: 575  ---AGLGGECTVPYRDIVVLMRATTGKAG---TYLEEFRRQNIPAYAKVGTGYFEAVEVE 628

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             +++L + I +   D+    +L+SPL      ++  +     E +     +      G  
Sbjct: 629  TVLSLLKVIDNPHQDIPLAGVLRSPLVGLGAAELAAVRLADKEGDFFRAVVAAAGQGGRL 688

Query: 479  -SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFT 536
             +     ++ + +    A+  S  D    +               G      L    +  
Sbjct: 689  GAVLAGFLERLEKWRSQARCGSLADLIWDVYRTTGYYDYVGGLPGGAGRQANLRALYDRA 748

Query: 537  LRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
             + E  ++  L   +  +E             A + + N VRIM++H AKGLE PVV L 
Sbjct: 749  RQYEATAFRGLFRFLRFIELLQEGGQDLGPAPALAESENVVRIMSIHQAKGLEFPVVILA 808

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            D G + +      ++ +   L   P       +          + + L++    E  R+L
Sbjct: 809  DMGRRFYMPDLNGEVLLHKDLGLGPYFVDPGARVSHPTAAWHVVRERLRREQLAEEMRIL 868

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YV MTRA ++LI+   +    +              +   D     + +           
Sbjct: 869  YVAMTRARERLILTGSAGRLEQAVLRWS-------HAAAGDGETLPVPVLAEAESFLDWV 921

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQK---IPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                  HP+  PL R     +            ++      D+ E    +P T       
Sbjct: 922  MPVLMAHPDGEPLRRLAVRSRPAAGTPKDRSRWEVHLHRPEDLEEAAGADPDTAAVLESL 981

Query: 769  NLESLLSDNQTFNRGLIIHKLLQV------------------------------------ 792
               + +  +   +    +H+ L                                      
Sbjct: 982  RRLAPIPADGGLD--EAVHRALSWHYPWSALASCGAKISATEVKRRFAAAAAGEEEVPAV 1039

Query: 793  IFTLPEHKRKNFIT--------------SYCTKNAKLWPAKEYKNLLLSI---------- 828
                    R  F+                   ++  L        +   +          
Sbjct: 1040 FPYRAPPARPAFLETARGLSPQAFGRAMHVVLQHLDLAGDLSVDGIRAQVAGLEEREFLT 1099

Query: 829  ---TRLLENPMMTTAMSCD----------SYSEVSVSGKINC----------PKKDIIIS 865
                R ++   +    +               E      +            P++ +++ 
Sbjct: 1100 ATEARAIDAEKLAGLFAGGLGRRLAGALWVRREWPFCLVVPAHEIYPGLEGHPEERVMVQ 1159

Query: 866  GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            G ID +      + + +YKT    P     +   +  QL +Y + ++     +     L 
Sbjct: 1160 GIIDCLFAEPDGLVLVDYKTDRVGPGGEAALADRYRGQLDLYARAVEAVLRRRVKERYLF 1219

Query: 926  YVSEP 930
             V   
Sbjct: 1220 LVMTG 1224


>gi|258424346|ref|ZP_05687226.1| recombination helicase AddA [Staphylococcus aureus A9635]
 gi|257845359|gb|EEV69393.1| recombination helicase AddA [Staphylococcus aureus A9635]
          Length = 1217

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 157/1024 (15%), Positives = 314/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L   + +F     E    ++ D +  + + +   
Sbjct: 456  TIDGDGTG---RRIDLSQNFRSRKEVLATTNYIFKHMMDEQVGEVNYDESAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++  I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELALIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSKQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|257425017|ref|ZP_05601444.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257427682|ref|ZP_05604081.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257430317|ref|ZP_05606700.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433014|ref|ZP_05609374.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410]
 gi|257435918|ref|ZP_05611966.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            M876]
 gi|282913739|ref|ZP_06321528.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
            subsp. aureus M899]
 gi|282923655|ref|ZP_06331335.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            C101]
 gi|293500781|ref|ZP_06666632.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            58-424]
 gi|293509732|ref|ZP_06668443.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            M809]
 gi|293524319|ref|ZP_06671006.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
            subsp. aureus M1015]
 gi|257272587|gb|EEV04710.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257275875|gb|EEV07348.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257279094|gb|EEV09705.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282429|gb|EEV12564.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410]
 gi|257285109|gb|EEV15228.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            M876]
 gi|282314523|gb|EFB44913.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            C101]
 gi|282322771|gb|EFB53093.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
            subsp. aureus M899]
 gi|290921282|gb|EFD98343.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus
            subsp. aureus M1015]
 gi|291095786|gb|EFE26047.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            58-424]
 gi|291467829|gb|EFF10344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            M809]
          Length = 1217

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 160/1024 (15%), Positives = 317/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +S +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D    T  +L   D   + I     Q  + IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFTLQILTNEDGSPSEIAESYRQHFHEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            F    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|307274585|ref|ZP_07555765.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134]
 gi|306508737|gb|EFM77827.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134]
          Length = 1263

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 157/962 (16%), Positives = 302/962 (31%), Gaps = 135/962 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            ++     +L           +          + +   +    E  R LYV +TRA  +L 
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 664  ICKHSN--------------------TSNEKKSNQRTWYDMVYDS--------------- 688
            +                          +  +  ++ +  + V  +               
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 689  -----FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                          I+  N       I              E+ +     ++        
Sbjct: 950  SNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLSF 1009

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTN---------------------------------- 769
              P +         + S I                                         
Sbjct: 1010 NYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSKP 1069

Query: 770  -LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                 +        G   H LLQ+I     P ++    +     +N  + PA   K  L 
Sbjct: 1070 KFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNLE 1129

Query: 827  SITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISIS 874
             I    +  +    +        E   S  I   +           D++I G ID     
Sbjct: 1130 QIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIEL 1189

Query: 875  QQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
                 +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++   
Sbjct: 1190 DNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGGV 1249

Query: 932  VF 933
            + 
Sbjct: 1250 II 1251


>gi|134299275|ref|YP_001112771.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1]
 gi|251764523|sp|A4J4E3|ADDA_DESRM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|134051975|gb|ABO49946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Desulfotomaculum
            reducens MI-1]
          Length = 1244

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 153/1047 (14%), Positives = 331/1047 (31%), Gaps = 145/1047 (13%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERF 66
             I K ++      +  + +   L+ + G P          +   + L         E+ +
Sbjct: 217  QIKKTIFQEVEGVLGLLKQAQWLAKQPGGPEPYSKTLTEDIINIKPLTNNDWDASWEKLY 276

Query: 67   SLLSSFFLTQ----KFTPQKNIITQE--INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              +++   ++    +      +  +   +  K+ +    +  +           +   + 
Sbjct: 277  RSITAIKWSKLSPCRGEIDDQLKNKAQNLRNKAKEKFNDIINTYFSAEPTVILEDLRSLQ 336

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL--KKRDVSAW----IRYKID 174
                    L       Y++ K+   ++DF DL      +L  K+ D + +    +  ++ 
Sbjct: 337  PLIADLAKLTIEFMELYQKKKQAKGLVDFGDLEHYCLTILLDKENDAAEFRPSAVAIELQ 396

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            Q+   +L+DE QD + +Q  ++R +           S     F VGD KQSIY F  AEP
Sbjct: 397  QQYAEVLVDEYQDINAVQETILRLV-----------SKKNNRFMVGDVKQSIYRFRLAEP 445

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDST 292
            K  L +  +        G   + I L  +FRS  +++  V+ +F       A  ++ D  
Sbjct: 446  KLFLSKSELYANTDNCQG---TRIGLSKNFRSRLEVVNAVNFIFRQIMTKKAGEITYDEL 502

Query: 293  TTIRHRSSRIG--------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
              +   +                V L ++  +Q + Q     E   +  +      S   
Sbjct: 503  EELHCGADYPQAEDVKTATGPVEVYLIDRKDAQLEEQNTDSAEEKLTDGEEQEDLDSDQA 562

Query: 345  LARRIAYTISNMIGT----------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
             AR I   I  M+                  GK R +  +DI++L+R             
Sbjct: 563  EARLIGRRIQAMVKGTDKAMGPEFKVWDKEIGKYRPVSYRDIVILLRATTGRAN---TFL 619

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                   +           + + ++  ++L + I +   D+    +L+SP+      D+ 
Sbjct: 620  EELRTMGVPTYAEVGTGYFEAVEVETFLSLLKIIDNPRQDVPLAGVLRSPVVGLKASDLA 679

Query: 455  KICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
            +I     E +         A             ++ +      A+  +  D   L+    
Sbjct: 680  EIRLCSKEGDFYDAVRIAAAADLGDVAVTLTKFLRQLENWRSRARRDTLADLIWLLYRET 739

Query: 512  KGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAH 565
                       G +    L    +   + E  S+  L   +  +E+           R+ 
Sbjct: 740  GYYDYVGGMVGGTQRQANLRVLYHRAKQFEATSFRGLFRFLRFVERLKDSGSDLGAARSL 799

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            S N + VRIM++H +KGLE PV+F+   G +       K M +   L   P I     + 
Sbjct: 800  SENEDVVRIMSIHKSKGLEFPVLFVAGLGKRFNMMDLNKDMLMHKELGLGPQIIHLGSRV 859

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------------------ 667
               +     + + ++K +  E  R+LYV +TRA ++LI+                     
Sbjct: 860  SYPSLPKLLIKQQIRKESVAEEMRVLYVALTRAREKLILVGAVRDLEKSLEKWCTSTYQA 919

Query: 668  -SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                 + +    + + D +  +        +++         +          +      
Sbjct: 920  GWTLPDAELMAAKCYLDWLCPAIARHHNGHELRSLAKTEGQPFSEVATDPSAWQLVFQAL 979

Query: 727  E-----------------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
            +                       E  +     +++ ++L                +  +
Sbjct: 980  KDIKNQTQENKEQSQGLLVKIKDMEPFEDAGLIKEVERRLSWQYPRAEVTTRPAKAAVTE 1039

Query: 764  TK---------------------GKTNLESLLSDNQTFNRGLIIHKLLQVIF--TLPEHK 800
             K                     G+              RG  IH ++Q I    LP+ +
Sbjct: 1040 VKHKFDELARQEAGVMSYRPKISGRPRFLQQDKGLTPAERGSAIHLVMQHIPLDKLPDEE 1099

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINC-- 857
                +     +   L P +        IT    + +    + +     E+  S  +    
Sbjct: 1100 GVQVLLQNLIQKEILLPQQAAAINPNHITGFFASSIGQRVLQAPKVERELPFSLALPATE 1159

Query: 858  --------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                      + +++ G ID +        + +YK+    P +   +   +  Q+++Y +
Sbjct: 1160 VYQELPECGDEMVLVQGVIDCLVDEGDGFLLIDYKSDAVYPGQDSPV-DRYRGQINLYAR 1218

Query: 910  ILKDSYPNKSLVCLLIYV-SEPKVFII 935
             ++D    K +   +IY+ +  ++  I
Sbjct: 1219 AVQDIL-GKPVKDRVIYLFNNGQIVHI 1244


>gi|312113012|ref|YP_004010608.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii
            ATCC 17100]
 gi|311218141|gb|ADP69509.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii
            ATCC 17100]
          Length = 1282

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 213/1045 (20%), Positives = 365/1045 (34%), Gaps = 113/1045 (10%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+  FGL+ NE+   +      +       I + V++  E G  T  + A +L+ A    
Sbjct: 228  LRRIFGLAANETAASLIDRAAAV--LSDETIREIVAIFAE-GGKTEAEIAASLRLAMSAP 284

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                + + +     T+   P+K + T    +++P L E+L ++Q +F  +  +    K+ 
Sbjct: 285  DAASKCACIKKALGTKGGEPKKRLATAPTQRRAPSLCERLSRAQTDFFDLDRKICAAKVV 344

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             +T A   LA  +   YE  K+    +DF+DLI  T  LL + D + W+ Y++D  I+H+
Sbjct: 345  AATAALFRLAAAIFDAYEAEKRARGAVDFDDLIEKTLALLHREDAAEWVLYQLDGRIDHV 404

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QDTS  QW ++ +LT +FF G++  ++  TLFAVGDEKQSIY F GA P+ +   
Sbjct: 405  LVDEAQDTSPEQWAIVAALTAEFFSGESARATMPTLFAVGDEKQSIYGFQGARPEFLAAF 464

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP---------ENAQGLSEDS 291
                +++A      F  I L LSFR+ A +L+ VD V +            +     +D 
Sbjct: 465  GAAYEQKARATQMPFRTIGLDLSFRTLAPVLSAVDHVSAALGGGLSTAPMPHIANRDDDG 524

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ---------ESWTSYFDSLPQESSA 342
                  +  R  +     +W        S    +            W     +L +E   
Sbjct: 525  GLVELWQPERGARQDKGDVWVPEDDAATSAKPAEALASRIATKVRGWLDGGAALGREGRP 584

Query: 343  SILARRI---------AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT-FL 392
                  I         A  +   +  + +   G  R+    D+ V+        L+    
Sbjct: 585  VDPGDIIILLKKRQPMASLLQAALKREGVPVAGADRMSLVDDLAVMDLLALGDALLQPED 644

Query: 393  TRFLKNDYKISVVGNDRFILTD--HLAIKDLMALGRFILSQED---------DLSFVCML 441
               L    K  + G     L    +     L A        E           L+    L
Sbjct: 645  DLALAAALKSPLFGLSDDDLFALRNPREGSLWAALGARAEAEAVGRFAEAAARLASWRDL 704

Query: 442  KSPL--FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
               L  F+F    +        +++          + G +      +  +    +     
Sbjct: 705  AHRLSPFDFYAQVLDHPLPAASDSDDGRGGQADDPHIGGASVASFGEDTNHFRGVGGDDM 764

Query: 500  PHDFFTLILGAK-------------KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                   I  +               GR  F +R G +  + LDEF N            
Sbjct: 765  STGKIDSISLSTETRYASAAAHTPPDGRAAFGARLGPQCFEALDEFSNLAETFSAGGRGD 824

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            L + +  +      +KR       EVRIMTVH AKGLE+P+V L D             +
Sbjct: 825  LADFLVFVRHGAAEVKRETDQATREVRIMTVHGAKGLEAPIVILADACGAR--AGRQPPI 882

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
             ++    D   +P+W  +       V+D  + L ++ + E  RLLYV MTRA D+L I  
Sbjct: 883  LLLEDRADGVRVPVWTIKGAGALPPVADQKEELAEAARRESGRLLYVAMTRARDRLYIAG 942

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                    +           +           +L   +  +         +H E  P+  
Sbjct: 943  SHTGDTLPEGCWFDTVKSALEPHAAGGVDDHGRLFWRLGSELHGVSGAGGNHGEPMPVAL 1002

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDI----------------------------------- 751
             +   +          L +                                         
Sbjct: 1003 PDWAGKSAPAGNSRVLLSASALVPPALIRNRFDAETLTDIQRRAASGSPNDALKSSREPA 1062

Query: 752  --------------NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                            P +   S +D  G       ++       G+ IH+LL+++  LP
Sbjct: 1063 SLNAHQPPVDAFFLRAPALETASDLDEWGPNP-HDGVARKVAQQTGIFIHRLLEILPGLP 1121

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
            E +R            +  P    +    S+ RLL  P +         SE  ++  +  
Sbjct: 1122 EGRRGEAAQLAAAAFREALPGNRIEAAFESVERLLATPHLRP-GDKRVLSEAGIAIALES 1180

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
             ++  I+ G+ D+ISI    I + +YK+      +   +P  ++AQL+ Y   L   YP 
Sbjct: 1181 NERAAIL-GQCDRISIGTDGIELLDYKSGTLSDGDP--LPAVYVAQLAAYRLALGQLYPA 1237

Query: 918  KSLVCLLIYVSEPKVFIIPQNKLNK 942
             ++   LI      +       L+ 
Sbjct: 1238 ANIHASLINARSASLLEADAEALDA 1262


>gi|257866180|ref|ZP_05645833.1| UvrD/REP helicase [Enterococcus casseliflavus EC30]
 gi|257872511|ref|ZP_05652164.1| UvrD/REP helicase [Enterococcus casseliflavus EC10]
 gi|257800114|gb|EEV29166.1| UvrD/REP helicase [Enterococcus casseliflavus EC30]
 gi|257806675|gb|EEV35497.1| UvrD/REP helicase [Enterococcus casseliflavus EC10]
          Length = 1225

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 150/1018 (14%), Positives = 312/1018 (30%), Gaps = 131/1018 (12%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                       +  ++ +  + +    T L   +TL+       ++  +  + +    + 
Sbjct: 235  AAHLLQAAQDYARSDEAMEKAAQL-IDTELGMVETLKALLDADDVDGFYEQIQTLRFGRY 293

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD------RFNTYKMFKSTLASLTLAK 131
               +K    +E++++   L++  KK  ++                ++          + +
Sbjct: 294  PAFRK-PEQKELSQEIKPLRDDAKKLVEQLKATFPYPPAEMMELLHRSAPVVEKMAAMTE 352

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                 ++E K     LDF DL   T  +L+     +            +L+DE QD + +
Sbjct: 353  AFMKAFQERKLSKGRLDFNDLEHFTLQILQGDGSGSEASTYYRDRFEEVLVDEYQDVNRL 412

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q  ++  + +          +P  +F VGD KQSIYSF  A+P   + +    +      
Sbjct: 413  QEAILYWVRQ-------VDHNPGNMFMVGDVKQSIYSFRLADPTLFIEKYLAFET----- 460

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                  I L  +FRS +D+L   + VF    + +             +       +    
Sbjct: 461  ENGGRRIVLAENFRSRSDVLDFTNLVFQQLMDERVGQIPYDEAAALITGFPDFPESEAFA 520

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---K 368
             +++       + +Q            +       +  A  I  +I +  +  + K    
Sbjct: 521  TELLLYEKEHESEEQLI----------DDKTEGEMQITALKIRELIESKFMIYDKKAKTN 570

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R I   DI++L   RK+  +I  + +     + I +  ND         I+ +++L + I
Sbjct: 571  RPITYNDIVLLTPTRKNNLVILDVFK----QFGIPMAVNDAQNYFQATEIQTVVSLLQII 626

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH----V 484
             +   D+  V +L+SP+   +ED + +I      ++     +        S         
Sbjct: 627  DNPYQDIPLVAVLRSPIVGLTEDQLAEIRLANRSSDYYDAVLDYHGQQEASPLWQTVDGF 686

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543
            +  + +    A+          I          +    G +    L   ++   + E++S
Sbjct: 687  LTKLEQWREEARRLPIPTLLWQIYEDTAYLDYVVGLPAGQQRYANLAALVHRAEKYEKSS 746

Query: 544  YSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +  L + I  +E+     K             VR+MTVH +KGLE PVVFL+DT      
Sbjct: 747  FRGLYQFIRFIEKMQEKNKDLAEPLATPVEEAVRVMTVHASKGLEFPVVFLLDTTKFFNY 806

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                K+      L             K        + +   K    E  R LYV +TRA 
Sbjct: 807  QDFQKRYIFEEQLGAGIQYVEPAENLKFETLPFQAIKQVRLKKALSEEMRKLYVALTRAE 866

Query: 660  DQLIICKHSNTSNE--------------------KKSNQRTWYDMVYDSFHNDERVKKIK 699
             +L +        +                    +   + +  D V  +      ++ + 
Sbjct: 867  QKLFLVGSYKNQADAFKTWQSGLTQSEMVLDPALRLVARGSLMDWVGRTLMRHPDMEAVF 926

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK---------------KLF 744
               S  K              N     +E  + L   ++  +                  
Sbjct: 927  SEASERKRTIDHPAHFRLSWWNQETITQEVQETLAPVEEPKRLIAPDSNIDDLLKRLAYR 986

Query: 745  SPIKNDINEPYILNPSTI--------------------------------DTKGKTNLES 772
             P +         + S +                                  +       
Sbjct: 987  YPYQKATQTTSYQSVSELKRLYNDPDDQQTTLLEWRSVSEKTNPQQYRYVQDELAKPKFL 1046

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS--ITR 830
              +     + G   H +LQ+I    +  +            K + ++E    +    I  
Sbjct: 1047 QETKPLASSIGTATHTVLQMIPLGMKPTQDTLALLIAELVKKQFFSEEIAKKIDRSSILW 1106

Query: 831  LLENPMMTTA--MSCDSYSEVSVSG---------KINCPKKDIIISGRIDQISISQQNIF 879
              +  +       S     E   S            + P   ++I G ID        I 
Sbjct: 1107 FYQTELGELLNQFSDVVKREQPFSMLKEADTIFEGFDEPDAPLLIHGIIDGYIELADEII 1166

Query: 880  IFEYKTHHHVPQE---IEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVF 933
            ++++KT      +    + +   +  QL +Y + L+ +  NK +    L+ +    + 
Sbjct: 1167 LYDFKTDDVFGSQAQIEQKMRERYYGQLKLYCQALEKAL-NKPVKQTYLVLLKPKMIV 1223


>gi|282903504|ref|ZP_06311395.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            C160]
 gi|282908262|ref|ZP_06316093.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            WW2703/97]
 gi|282918665|ref|ZP_06326402.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            C427]
 gi|283957705|ref|ZP_06375158.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            A017934/97]
 gi|295427450|ref|ZP_06820085.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|282317799|gb|EFB48171.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            C427]
 gi|282327927|gb|EFB58209.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            WW2703/97]
 gi|282596459|gb|EFC01420.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            C160]
 gi|283791156|gb|EFC29971.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            A017934/97]
 gi|295128838|gb|EFG58469.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|312438670|gb|ADQ77741.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            TCH60]
 gi|315194499|gb|EFU24891.1| hypothetical protein CGSSa00_12270 [Staphylococcus aureus subsp.
            aureus CGS00]
          Length = 1217

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +S +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q  + IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            F    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|49483127|ref|YP_040351.1| hypothetical protein SAR0929 [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|81651446|sp|Q6GIC1|ADDA_STAAR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|49241256|emb|CAG39935.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            MRSA252]
          Length = 1217

 Score =  363 bits (931), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +S +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q  + IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            F    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKKLVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|253731575|ref|ZP_04865740.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
            aureus USA300_TCH959]
 gi|253724818|gb|EES93547.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp.
            aureus USA300_TCH959]
          Length = 1217

 Score =  363 bits (931), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 156/1024 (15%), Positives = 315/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +  +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q    IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TIDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  YDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N ++  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKSIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    +          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQVEDSSRPNVNISIIYFEDVSTETILDNNEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADVKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|282905282|ref|ZP_06313139.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|282331689|gb|EFB61201.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            Btn1260]
          Length = 1217

 Score =  363 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +S +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSRETDDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q  + IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            F    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|297590190|ref|ZP_06948829.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            MN8]
 gi|297576489|gb|EFH95204.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus
            MN8]
          Length = 1217

 Score =  363 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +S +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q  + IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            F    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|293380925|ref|ZP_06626959.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1]
 gi|290922500|gb|EFD99468.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1]
          Length = 1202

 Score =  363 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 169/993 (17%), Positives = 317/993 (31%), Gaps = 129/993 (12%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFS----LLSSFFLTQKFTPQKNIITQEINKKSP 94
            +          AQ L         +  +     LL S   T  +  + +   +++     
Sbjct: 242  LAKAKEAFTLFAQNLDHFVFALENDADYDKQRKLLRSCVFTANY-RKSSKWDEDVLNFYE 300

Query: 95   DLKEKLKKSQDEFIK------IRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKN 144
            DL++   ++++            D     K+ +     +         L   + + K+  
Sbjct: 301  DLQKLKDEAKNLVFDTFTSFFAVDEQEQIKVMQRGQKIVAAIAKSELALIDRFNKLKRSE 360

Query: 145  CVLDFEDLIINTNDLLKKRDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
             +LD+ D+      +L +    S   R     +   ILIDE QD + +Q  +I+ +    
Sbjct: 361  NLLDYSDMEQLAYQILSQDTSNSQMAREFYQNKFKEILIDEYQDINALQENIIQQI---- 416

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                  +    TLF VGD KQSIY F  AEP   L++       A +  ++   I L  +
Sbjct: 417  -----KNKDKNTLFMVGDVKQSIYGFRQAEPSLFLKKYHDF---ANDDNKQTKRILLSDN 468

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            FRST  +  +V++VF    ++     D               G +    +   ++  + +
Sbjct: 469  FRSTEPVTKIVNQVFKSVLSSDFGGIDYQKE-----------GQLIFGAKYYPENTPKAS 517

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVR 381
                       +  +        + +   I  +        + K   R ++  DI +L R
Sbjct: 518  EVIVHEKKNSSNEDENEIDFSEIQMVLARIKQLKEERVQIFDSKTGMRELRYSDIAILTR 577

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             R D                I +   D         +  +M   + I + + D+  V +L
Sbjct: 578  SRSD----NLEIMQEFAKQDIPLFVTDAKNYFQTFELTVMMNYLKIIDNPDQDIPLVSVL 633

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            +SPLFNF E D+ KI  +   +             +   ++ +  +  + +L   A    
Sbjct: 634  RSPLFNFGEKDLAKIRIKSKNSTFYSALTSYVGVGDELSTRIKDFLNQLADLRKFATAHR 693

Query: 500  PHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---- 554
              +    I       +   +   G +    L+         E   +  L + I+ +    
Sbjct: 694  ISELIWSIYARTNLLEIMTALPNGEQRRVNLEALYERAASYENAGFKGLYQFINFINRMR 753

Query: 555  -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              Q             N VR+MT+H +KGLE P+VF V    +           I    +
Sbjct: 754  QSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHKYQMRDLKGNYVI---SS 810

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            D  GI +     +  + + +      K+   EE  R+LYV +TRA  +LI+       ++
Sbjct: 811  DSIGITLREEHYRIDSLVKAMGNVTKKRQLLEEEARILYVALTRAKQKLILVGDVPNLDK 870

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLT---NSINKDEWIAYEWST-------------- 716
            +     T  + +      D+      L+    ++  D  +A + S               
Sbjct: 871  RVKEWSTELNQIGQLSLADKLSSTSPLSFMGPALALDRHLAVKMSDITNSLDKSQSFLYI 930

Query: 717  ----HHPENTPLEREETIKQ------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                 + E    ++ ET         L    K   +   P K+          S I    
Sbjct: 931  NYENANGELPDYQKAETSNDKTQSNLLNQTTKRLYQFNYPFKDASETTAYQAVSEIKKAF 990

Query: 767  KTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF---TLPE 798
               +E+ L +                               G   H +LQ         E
Sbjct: 991  NDPIETELENAHLLTSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHMILQYYDYQGNGAE 1050

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS--- 852
             + +  I     +  K    +   +L         +            +   E+  S   
Sbjct: 1051 DQLEVEIQELIKQ--KKLNPEIVSSLKKDQIEWFVHSNFAEEFWQKPENLKREIDFSSLI 1108

Query: 853  ------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTHIA 902
                     + P   I++ G ID   +    I +F+YKT H       + IE I   +  
Sbjct: 1109 SAKTLFKNFSDPNAKILVHGTIDGYFVKNDGIILFDYKTDHVDQSHLSESIELIKEKYTG 1168

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            QL +YE+ + +    K +   LI +   +   +
Sbjct: 1169 QLRLYEQAINEFSQKKVIGKYLILLDAKQAVEV 1201


>gi|282910543|ref|ZP_06318347.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|282325935|gb|EFB56243.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus
            WBG10049]
          Length = 1217

 Score =  363 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 159/1024 (15%), Positives = 316/1024 (30%), Gaps = 153/1024 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L++ E    +   +    +  +S +  +   +        +K+A  +            
Sbjct: 248  HLAVIEDERRLMGRVLEGGFIDISYLTGHEFGARLPNVTAKIKEANEM-----------M 296

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L    L  ++   K++I +  +       + LK    +                   
Sbjct: 297  VDALEDAKL--QYKKYKSLIDKVKSDYFSREADDLKADMQQL------------APRVKY 342

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDE 184
               + K + + +   K+   +LDF D       +L   D   + I     Q  + IL+DE
Sbjct: 343  LARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFHEILVDE 402

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q +++  +       K        LF VGD KQSIY F  A+P   + + +  
Sbjct: 403  YQDTNRVQEKILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRF 455

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRI 302
                   G     I+L  +FRS  ++L+  + +F     E    +  D    + + +   
Sbjct: 456  TLDGDGTG---RRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVRYDEAAQLYYGAPYD 512

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 V L   V +  +                    + +   A  I   + +++    +
Sbjct: 513  ESDHPVNLKVLVEADQEH----------------SDLTGSEQEAHFIVEQVKDILEHQKV 556

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            F    G  R    KDI++L R            +    +  I    N R    +   ++ 
Sbjct: 557  FDMKTGSYRSATYKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRL 612

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
            +++  R I +   D+  V +++S ++ F ED++ +I       +  Y+ I  + N     
Sbjct: 613  VLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAAD 672

Query: 479  ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 K +  +  I      ++    +             Q F    G       L    
Sbjct: 673  AILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLF 732

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVV 588
            N  +  E +S+  L + I  +++     K     N      N VR+MT+H++KGLE P V
Sbjct: 733  NKAIEFENSSFRGLYQFIGFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFV 792

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                           + + +               +    +          +K    E  
Sbjct: 793  IYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYKAVAEKELVSEEM 852

Query: 649  RLLYVGMTRASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYD 687
            RL+YV +TRA +QL +                                +     Y ++  
Sbjct: 853  RLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSK 912

Query: 688  SFHN--DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----------------EET 729
                   + +K  K    I          S  + E+   E                 +  
Sbjct: 913  HQSASIPDDLKFEKDIAQIEDSSRPNVNISIIYFEDVSTETILDNDEYRSVNQLETMQNG 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----------------------DTKG 766
             + +  + K       P  ND  +P   + S +                        T  
Sbjct: 973  NEDVKAQIKHQLDYQYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYE 1032

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
            +    S     +    G ++H ++Q +    E   +  +  Y     +  +  A   K++
Sbjct: 1033 RPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADTKKDI 1092

Query: 825  L-LSITRLLENPMMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQ 875
                I   + + + +    +   Y E+          ++    +D+ II G ID I +  
Sbjct: 1093 RMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKD 1152

Query: 876  QNIFIFEYKTH---HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
               +  +YKT           E     +   +  Q+  Y+  L+    NK +   L +  
Sbjct: 1153 GVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFK 1211

Query: 929  EPKV 932
               +
Sbjct: 1212 FGTL 1215


>gi|168181307|ref|ZP_02615971.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf]
 gi|237793761|ref|YP_002861313.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str. 657]
 gi|259710033|sp|C3L047|ADDA_CLOB6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|182675388|gb|EDT87349.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf]
 gi|229262225|gb|ACQ53258.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str. 657]
          Length = 1279

 Score =  363 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 159/992 (16%), Positives = 325/992 (32%), Gaps = 150/992 (15%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    +     +++  K      +L+ + + +     +     ++ S  A   L    + 
Sbjct: 288  KDADKEAKERVKKLRDKVKKRIIELRITLNSYENEFTKKEFIFLYPSMKALSNLVILFDK 347

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSL 190
             YE  K++  ++DF D+      +L  +D     + + I     ++   +LIDE QD++L
Sbjct: 348  KYEAKKRERDLIDFNDIEHLCLSILTDKDSKGHIIPSDIALDYRKKFAEVLIDEYQDSNL 407

Query: 191  IQWEVIRSLTEDFFVGKNTHS------------------SPRTLFAVGDEKQSIYSFHGA 232
            +Q  ++  ++         +                        F VGD KQSIY F  A
Sbjct: 408  VQEVIMSMVSRVKGYWSFYNGQLMFNEEEINLEEPHIGLDIPNRFMVGDVKQSIYRFRQA 467

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P+  L +           G K   ++L  +FRS  +++  V+ +F    +      D T
Sbjct: 468  KPEIFLDKYNEYS---EEEGIKNRKVKLFKNFRSREEVINGVNYLFKQIMSKTIGELDYT 524

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                 +              ++          ++       D      +  +  R +A  
Sbjct: 525  EEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDEEEALDNIQLEGRLVAKK 584

Query: 353  ISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            I  ++G +            G+ R +Q +DI++L+R   +   +            I V 
Sbjct: 585  IQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAPV---FVEELAKEGIPVF 641

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-------- 457
             +      D   IK +++L + I +   D+  + +L+SP+ +F++D++  I         
Sbjct: 642  ADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASFNDDELIDIRMVNKNIAF 701

Query: 458  ----------TQRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQ 496
                       +  + ++ Y +  K  N      +             I+ +      + 
Sbjct: 702  YECMEIIYRLYKNEKLDSYYSFYIKDENKINKIIKDMNEKLKNKICSFIEKLKLWREKSI 761

Query: 497  FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554
                 +F   +           + + G +    L        +  + SY  L   I+ + 
Sbjct: 762  NIDIDEFIWFLYMETGYYGYAGALQAGEQRQANLRILFQRAKQYAKTSYKGLFNFINFIN 821

Query: 555  ----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                        +    N N +RIM++H +KGLE PVV L  TG         K +    
Sbjct: 822  KLKFSSGDMGSAKILGENENVIRIMSIHKSKGLEFPVVILSGTGKNFNMTDLNKNILFHR 881

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             L   P       +    + + + +   ++  T  E  R+LYV +TRA ++LII    N 
Sbjct: 882  DLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRAREKLIITGLINN 941

Query: 671  SNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKLTN---------S 703
             ++   +                   +T+ D +  +    +     +             
Sbjct: 942  MDKAVESWLNLSDDKNKVPEYAVMNGKTYLDWIGPAIIKHKDAVSFREELKMSSELSNIV 1001

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI------------ 751
             +K +W    W+        +E +E       ++ +     S  K +I            
Sbjct: 1002 DDKSKWKIELWNKKELLKEKVEEDEVEISEKIKETLMNLGESNYKEEIYKRLSFKYKYDN 1061

Query: 752  --NEPYILNPSTID------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
              + P  L+ S +                      K              RG IIH  +Q
Sbjct: 1062 ASSIPTKLSVSDVKKQFILDEKENTEELFKKVELRKPMFMGEKKKISPSERGTIIHLFMQ 1121

Query: 792  VIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYS 847
             +       +   K  I     +    +   +  N    I +   + +    + S +   
Sbjct: 1122 HLDLKKAENKEDIKEQINRLIEREFITYEQSKVINPYK-ILKFCRSELGKRMINSNNINR 1180

Query: 848  EVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
            E+  S +I                + +II G ID     ++ + + +YKT +    +IE 
Sbjct: 1181 EMPFSIEIPAVEIYRELDKNIYKDEKLIIQGIIDCYFEEEEGLVLLDYKTDYV--NDIEE 1238

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            I   +  Q+  YE+ L      K++    +Y+
Sbjct: 1239 IKNRYEIQIKYYEEALNRI-TGKTVKDKYLYL 1269


>gi|260589313|ref|ZP_05855226.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583]
 gi|260540394|gb|EEX20963.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583]
          Length = 1223

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 156/1024 (15%), Positives = 331/1024 (32%), Gaps = 147/1024 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            I  ++          + + + +S E   P          + + + L++       +E   
Sbjct: 216  IKNEVKQEIKEASMLLKQALEISKEPDGPVFYIGLLEDEVSELEKLERTENFFEWKEMLD 275

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF----------NTY 117
             L    L      +K ++++   + + +L+    +++++   +++R+          N  
Sbjct: 276  KLEFKRLPAGKKAEKELVSESRQELAKNLR---NEAKEQIKALKERYFQETAEEMLENLQ 332

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL----KKRDVSAWIRYKI 173
            +  +     + L       Y E KK+  +LDF DL     ++L    K++D       ++
Sbjct: 333  RAGEPVGVLVDLTLAFMKLYREKKKEKNILDFGDLEHYALEILIHHTKEKDERTDAAREL 392

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             ++   I+IDE QD++L+Q +++                   +F VGD KQSIY F  A 
Sbjct: 393  SKKFAEIMIDEYQDSNLVQEKLL-------TSVSKIEDGIYNIFMVGDVKQSIYRFRLAR 445

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P          +     AG+    I+L  +FRS A++L  V+ +F           +   
Sbjct: 446  PDL---FMEKFKTYPQEAGENCLRIDLHKNFRSRAEVLEGVNYLFYQIMG------EDLG 496

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             + + S+     G          + + +  P  E      +         + AR +A  I
Sbjct: 497  GVEYDSTAALYPGRT-----FPPKQEEESEPATEVLLLEDEEENT---RELEARMVALRI 548

Query: 354  SNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
              + G   +      + R  +  D  +L+R            + + N   I      +  
Sbjct: 549  GELAGKYLVLDKKTEEYRPAKYSDFTILLRTMSGWA---ETFKKILNSCGIPASVTTKTG 605

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYEY 469
                  +  ++   + + +   D+     L      FS  ++ +I      +E    YE 
Sbjct: 606  YFSAQEVTTVLDYLKILDNPMQDIPLAAALHGLPDGFSFQELAEIKVLGMENEKNGFYEA 665

Query: 470  ---IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEV 525
                +K ++    K +       +L     +   H+       A        S   G + 
Sbjct: 666  LLLGEKLSSPLGEKIRRFFAVYRDLRRKVPYTPMHELIWDFYDATDFLVYQQSFVSGEQR 725

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTA 580
               L          E  SY  L   I  +E     Q         S N + VRIM++H +
Sbjct: 726  KANLLMLAEKARDYESTSYRGLFNFIRYIENLKKYQVDFGEANTLSENEDTVRIMSIHGS 785

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE P+VF+   G Q+      + + + P L           + ++R  +   + + + 
Sbjct: 786  KGLEFPIVFVCGMGKQINMQDARESIVLHPDLGIGSPYVDTQLRIRTRTILQKAVQREIL 845

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTW 681
              +  E  R+LYV +TRA ++LI+   ++   +                    +   +++
Sbjct: 846  LESLGEELRILYVALTRAKEKLILTGVTSKLEDTLKSFEMLKKQEEERLPYGLRVKGKSY 905

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             D V  +      +K +      +                  ++  E +      +    
Sbjct: 906  LDWVLAALARHRAMKPLYEMYDFSVYSLNEMYDREPDFTVRQVQPLELVLDEAQLRTEEM 965

Query: 742  ---------------------------KLFSPIKNDINEPYILNPSTIDTKGKTNLE--- 771
                                           P + +   P  L  S I      + E   
Sbjct: 966  LKKGELLLWDSSEVYDEKWRKLFRDSFSYEYPYQAEGAIPAKLTVSEIKRMQSADTEESE 1025

Query: 772  -----------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                                 + +   +G + H++ + +    +   K  I         
Sbjct: 1026 ILLEKEETEEIVPLFMQETKEELKGAAKGTLYHRVWENL-DYEKIDTKEQIEEQLEN--M 1082

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINC--------PKKDI 862
            L   ++    +    R  +NP+     +       Y E      +           +++I
Sbjct: 1083 LTTEEKKSIWISDFYRFAKNPLAVRMKAAAQRGQLYREQPFVIAMPANQMKKEYETEEEI 1142

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ++ G ID     +  + + +YKT      + + +   +  Q+  Y+K L+    ++ +  
Sbjct: 1143 LVQGIIDAYFEEEDGLVLVDYKTDKVQKGQEKELIEKYKVQMRYYKKALEMI-TDREVKE 1201

Query: 923  LLIY 926
            + IY
Sbjct: 1202 IYIY 1205


>gi|257887557|ref|ZP_05667210.1| UvrD/REP helicase [Enterococcus faecium 1,141,733]
 gi|257823611|gb|EEV50543.1| UvrD/REP helicase [Enterococcus faecium 1,141,733]
          Length = 1240

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 160/1001 (15%), Positives = 325/1001 (32%), Gaps = 130/1001 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97
                ++ + + +A     +E+ ++ L     +   + +K  +       + +  K+  L 
Sbjct: 259  AGEQQQIKNIYEAFSQDRLEDAYASLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +++ KS       +    T K          + +     +   K++  VLDF DL     
Sbjct: 319  QQISKSYFPVSPSQMEELTEKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378

Query: 158  DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +L ++   AW+         ++   +++DE QD + +Q  ++  L E          + 
Sbjct: 379  QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIYSF  A+P   + +     K+     +    I L  +FRS  ++L+ 
Sbjct: 432  GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +     +            Q   +++     Q   + E  T   
Sbjct: 487  TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLIT 390
                 E    +        I  +I +  +  + K    R I+ +DI++L   +K+   I 
Sbjct: 547  LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKDRPIEYRDIVLLTPTKKNNLTIL 602

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + + L     I +  ND         I+ +++L + I +   D+    +L+SP+    E
Sbjct: 603  EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPVVGLIE 658

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             ++  I             +   A+       K +H  K +     +A+  S  D    I
Sbjct: 659  PELASIRLADRAHTYYDAVLAYQASNEDELAVKLEHFGKQLDHWRELARRSSITDLLWDI 718

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +  +    G +    L   ++     EQ+S+  L + +  +E+     K    
Sbjct: 719  YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778

Query: 567  A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N VR+MT+H +KGLE PVVFL+D   +        +      L          
Sbjct: 779  PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673
             +          +    +     E  R LYVG+TRA  +L I        +         
Sbjct: 839  TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898

Query: 674  -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS------------------I 704
                       +   + +  + +         ++K                         
Sbjct: 899  DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEVSTSLLQYSNVQFSISWMNQ 958

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                      +     N   + +E    L D  +       P +         + S I  
Sbjct: 959  QSIIEQRQLLAEKELVNLDQQVKEKETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018

Query: 765  KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791
              +   ++  S                                        G   H LLQ
Sbjct: 1019 LFEDPDDTQESRLTLESSQTKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078

Query: 792  VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848
            ++   +P  +  N       K   +      K  + SI    +  +    ++   +   E
Sbjct: 1079 LLPLEMPTTESINQKLQELVKKRLIDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138

Query: 849  VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895
               S  ++           + +++I G +D     + ++ I+++KT        P EI+ 
Sbjct: 1139 QPFSMLLSADEVFQDYPNQEDELLIHGIVDGYLEEKDHLHIYDFKTDFILHPDDPAEIDA 1198

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
            I   +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 1199 IVQKYQGQLRLYQQAMTEAL-NKPVENVFLILLRVKRIINI 1238


>gi|227878665|ref|ZP_03996580.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus
            JV-V01]
 gi|256843261|ref|ZP_05548749.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN]
 gi|256850382|ref|ZP_05555810.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus
            MV-1A-US]
 gi|262046470|ref|ZP_06019432.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US]
 gi|312978152|ref|ZP_07789896.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05]
 gi|227861729|gb|EEJ69333.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus
            JV-V01]
 gi|256614681|gb|EEU19882.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN]
 gi|256712779|gb|EEU27772.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus
            MV-1A-US]
 gi|260573341|gb|EEX29899.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US]
 gi|310894870|gb|EFQ43940.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05]
          Length = 1202

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 169/993 (17%), Positives = 317/993 (31%), Gaps = 129/993 (12%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFS----LLSSFFLTQKFTPQKNIITQEINKKSP 94
            +          AQ L         +  +     LL S   T  +  + +   +++     
Sbjct: 242  LAKAKEAFTLFAQNLDHFVFALENDADYDKQRKLLRSCVFTANY-RKSSKWDEDVLNFYE 300

Query: 95   DLKEKLKKSQDEFIK------IRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKN 144
            DL++   ++++            D     K+ +     +         L   + + K+  
Sbjct: 301  DLQKLKDEAKNLVFDTFTSFFAVDEQEQIKVMQRGQKIVAAIAKSELALIDRFNKLKRSE 360

Query: 145  CVLDFEDLIINTNDLLKKRDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
             +LD+ D+      +L +    S   R     +   ILIDE QD + +Q  +I+ +    
Sbjct: 361  NLLDYSDMEQLAYQILSQDTSNSQMAREFYQNKFKEILIDEYQDINALQENIIQQI---- 416

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                  +    TLF VGD KQSIY F  AEP   L++       A +  ++   I L  +
Sbjct: 417  -----KNKDKNTLFMVGDVKQSIYGFRQAEPSLFLKKYHDF---ANDDNKQTKRILLSDN 468

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            FRST  +  +V++VF    ++     D               G +    +   ++  + +
Sbjct: 469  FRSTEPVTKIVNQVFKSVLSSDFGGIDYQKE-----------GQLIFGAKYYPENTPKAS 517

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVR 381
                       +  +        + +   I  +        + K   R ++  DI +L R
Sbjct: 518  EVIVHEKKNSSNEDENEIDFSEIQMVLARIKQLKEERVQIFDSKTGMRELRYSDIAILTR 577

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             R D                I +   D         +  +M   + I + + D+  V +L
Sbjct: 578  SRSD----NLEIMQEFAKQDIPLFVTDAKNYFQTFELTVMMNYLKIIDNPDQDIPLVSVL 633

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            +SPLFNF E D+ KI  +   +             +   ++ +  +  + +L   A    
Sbjct: 634  RSPLFNFGEKDLAKIRIKSKNSTFYSALTSYVGVGDELSTRIKDFLNQLADLRKFATAHR 693

Query: 500  PHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---- 554
              +    I       +   +   G +    L+         E   +  L + I+ +    
Sbjct: 694  ISELIWSIYARTNLLEIMTALPNGEQRRVNLEALYERAASYESAGFKGLYQFINFINRMR 753

Query: 555  -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              Q             N VR+MT+H +KGLE P+VF V    +           I    +
Sbjct: 754  QSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHKYQMRDLKGNYVI---SS 810

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            D  GI +     +  + + +      K+   EE  R+LYV +TRA  +LI+       ++
Sbjct: 811  DSIGITLREEHYRIDSLVKAMGNVTKKRQLLEEEARILYVALTRAKQKLILVGDVPNLDK 870

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLT---NSINKDEWIAYEWST-------------- 716
            +     T  + +      D+      L+    ++  D  +A + S               
Sbjct: 871  RVKEWSTELNQIGQLSLADKLSSTSPLSFMGPALALDRHLAVKMSDITNSLDKSQSFLYI 930

Query: 717  ----HHPENTPLEREETIKQ------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                 + E    ++ ET         L    K   +   P K+          S I    
Sbjct: 931  NYENANGELPDYQKAETSNDKTQSNLLNQTTKRLYQFNYPFKDASETTAYQAVSEIKKAF 990

Query: 767  KTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF---TLPE 798
               +E+ L +                               G   H +LQ         E
Sbjct: 991  NDPIETELENAHLLTSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHMILQYYDYQGNGAE 1050

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS--- 852
             + +  I     +  K    +   +L         +            +   E+  S   
Sbjct: 1051 DQLEVEIQELIKQ--KKLNPEIVSSLKKDQIEWFVHSNFAEEFWQKPENLKREIDFSSLI 1108

Query: 853  ------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTHIA 902
                     + P   I++ G ID   +    I +F+YKT H       + IE I   +  
Sbjct: 1109 SAKTLFKNFSDPNAKILVHGTIDGYFVKNDGIILFDYKTDHVDQSHLSESIELIKEKYTG 1168

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            QL +YE+ + +    K +   LI +   +   +
Sbjct: 1169 QLRLYEQAINEFSQKKVIGKYLILLDAKQAVEV 1201


>gi|295693034|ref|YP_003601644.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus crispatus
            ST1]
 gi|295031140|emb|CBL50619.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus crispatus
            ST1]
          Length = 1202

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 169/995 (16%), Positives = 320/995 (32%), Gaps = 125/995 (12%)

Query: 33   KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92
            K ++ + E            +         +++  LL S   T  +  + +   +++   
Sbjct: 240  KELAKAKEAFTLFAQNLDHFVFALENDADYDKQRELLRSCVFTANY-RKSSKWDEDVLNF 298

Query: 93   SPDLKEKLKKSQDEFIK------IRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKK 142
              DL++   ++++            D     K+ K     +         L   + + K+
Sbjct: 299  YEDLQKLKDEAKNLVFDTFTSFFAVDEQEQIKVMKRGQKIVAAIAKSELALIDRFNKLKR 358

Query: 143  KNCVLDFEDLIINTNDLLKKRDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
               +LD+ D+      +L +    S   R     +   ILIDE QD + +Q  +I+ +  
Sbjct: 359  SENLLDYSDMEQLAYQILSQDTSNSQMAREFYQNKFKEILIDEYQDINALQENIIQQI-- 416

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +    TLF VGD KQSIY F  AEP   L++       A +  ++   I L 
Sbjct: 417  -------KNKDKNTLFMVGDVKQSIYGFRQAEPSLFLKKYHDF---ANDDNKQTKRILLS 466

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             +FRST  +  +V++VF    ++     D               G +    +   ++  +
Sbjct: 467  DNFRSTEPVTKIVNQVFKSVLSSDFGGIDYQKE-----------GQLIFGAKYYPENTPK 515

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVL 379
             +           +  +        + +   I  +        + K   R ++  DI +L
Sbjct: 516  ASEVIVHEKKNSSNEDENEIDFSEIQMVLARIKQLKEERVQIFDSKTGMRELRYSDIAIL 575

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
             R R D                I +   D         +  +M   + I + + D+  V 
Sbjct: 576  TRSRSD----NLEIMQEFAKQDIPLFVTDAKNYFQTFELTVMMNYLKIIDNPDQDIPLVS 631

Query: 440  MLKSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQF 497
            +L+SPLFNF E D+ KI  +   +             +   ++ +  +  + +L   A  
Sbjct: 632  VLRSPLFNFGEKDLAKIRIKSKNSTFYSALTSYVGVGDELSTRIKDFLNQLADLRKFATA 691

Query: 498  CSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-- 554
                +    I       +   +   G +    L+         E   +  L + I+ +  
Sbjct: 692  HRISELIWSIYARTNLLEIMTALPNGEQRRVNLEALYERAASYESAGFKGLYQFINFINR 751

Query: 555  ---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                Q             N VR+MT+H +KGLE P+VF V    +           I   
Sbjct: 752  MRQSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHKYQMRDLKGNYVI--- 808

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             +D  GI +     +  + + +      K+   EE  R+LYV +TRA  +LI+       
Sbjct: 809  SSDSIGITLREEHYRIDSLVKAMGNVTKKRQLLEEEARILYVALTRAKQKLILVGDVPNL 868

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLT---NSINKDEWIAYEWST------------ 716
            +++     T  + +      D+      L+    ++  D  +A + S             
Sbjct: 869  DKRVKEWSTELNQIGQLSLADKLSSTSPLSFMGPALALDRHLAVKMSDITNSLDKSQSFL 928

Query: 717  ------HHPENTPLEREETIKQ------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                   + E    ++ ET         L    K   +   P K+          S I  
Sbjct: 929  YINYENANGELPDYQKAETSNDKTQSNLLNQTTKRLYQFNYPFKDASETTAYQAVSEIKK 988

Query: 765  KGKTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF---TL 796
                 +E+ L +                               G   H +LQ        
Sbjct: 989  AFNDPIETELENAHLLTSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHMILQYYDYHGNG 1048

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS- 852
             E + +  I     +  K    +   +L         +            +   E+  S 
Sbjct: 1049 AEDQLEVEIQELIKQ--KKLNPEIVSSLKKDQIEWFVHSNFAEEFWQKPENLKREIDFSS 1106

Query: 853  --------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTH 900
                       + P   I++ G ID   +    I +F+YKT H       + IE I   +
Sbjct: 1107 LISAKTLFKNFSDPNAKILVHGTIDGYFVKNDGIILFDYKTDHVDQSHLSESIELIKEKY 1166

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              QL +YE+ + +    K +   LI +   +   +
Sbjct: 1167 TGQLRLYEQAINEFSQKKVIGKYLILLDAKQAVEV 1201


>gi|315613168|ref|ZP_07888078.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC 49296]
 gi|315314730|gb|EFU62772.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC 49296]
          Length = 1217

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 158/1030 (15%), Positives = 345/1030 (33%), Gaps = 140/1030 (13%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQC 61
              F +  ++  E I + LW L  F    ++              + +    +   +Q   
Sbjct: 229  ADFAIEKDKLTEQIKQALWDLESFFRYHLDNDAKEFPKAAYLEAVQQVLDEISSLNQESD 288

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTY 117
             +   ++L+      K    + +           L +     +     +  ++ D+    
Sbjct: 289  SQAYQAVLARVVAISKEKNGRALANSSRKADLKPLADAYNDERKAQFAKLGQLADQITIL 348

Query: 118  KMFKS-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
               +     +  LAK            Y + K++    +F D+   T ++L+       +
Sbjct: 349  DYQERYHEDTWDLAKIFQTFMSDFVEAYRKRKRQENAFEFADISHYTIEILENFP---QV 405

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
            R    +  + +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F
Sbjct: 406  REAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRF 454

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
              A+P+    + +   +      Q+  +I L  +FRS++++L+  +  F+   + +    
Sbjct: 455  RQADPQIFNEKFQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDAFARLMDQEVGEI 510

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            +  +  +   +            + +         ++E   +      +        R +
Sbjct: 511  NYDSMHQLVFANTKLTPNPDNKAEFLLYDKDDSGQEEEESQTETKLTGEM-------RLV 563

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
               I  +            + +  K+I +L   R              ++Y I V  +  
Sbjct: 564  IKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGE 610

Query: 410  FILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                   L ++ ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +    
Sbjct: 611  QNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKVEDKVQEN 670

Query: 469  YIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
              +K  N                  K    +  +      A+  S +D    I   +   
Sbjct: 671  LYEKLVNAQKLATSQKNLIHTALAEKLSQFMDILDSWRLYAKTHSLYDLIWKIYNDRFYY 730

Query: 515  QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANH 569
                +   G      L        + E++++  L   I  ++Q           A +   
Sbjct: 731  DYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPK 790

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PG 617
            + V +MT+H +KGLE P VF+++          + ++ +                     
Sbjct: 791  DAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKVDTEAVEA 850

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT------- 670
                  +    +   +   K L+ ++  E  RLLYV MTRA  +L +    +        
Sbjct: 851  HYPKTIKLSIPSLTYTQNEKELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKE 910

Query: 671  ---------SNEKKSNQRTWYDMVY-----DSFHNDERVKKIKLTNSINKDEWIAYEWST 716
                      +  +   R + D ++      +  N   + +    + + ++     E  +
Sbjct: 911  YPAVNNGKLDSNTRLQARNFQDWIWAISKVFAKDNLNFIYRFVGEDQLTREAIGELENRS 970

Query: 717  HHPENTP--LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT------ 768
               +++     + ETIK+ ++  K  +   +  +  I  P +  PS I    +       
Sbjct: 971  PLQDSSQSSNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEG 1030

Query: 769  ------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                                 S          G   H+L+Q I      +R    +   T
Sbjct: 1031 VEITNQTKSPEKKISFDLPDFSTKEKVTGAEIGSATHELMQRID---LSQRPTLASLTET 1087

Query: 811  KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIIS 865
                         + L  I    + P+    ++     Y E   S   K    ++D ++ 
Sbjct: 1088 LKQVQTSPGVRDKINLSKILAFFDTPLGQEILANTDHLYREQPFSMLKKDQKSQEDFVVR 1147

Query: 866  GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            G +D   + +  I +F+YKT  +   +   +   +  QL++Y + L  +Y  +++   LI
Sbjct: 1148 GILDGYLLYEDRIILFDYKTDRY--DQPIQLIDRYRGQLALYGEALSRAYSIENIEKYLI 1205

Query: 926  YVSEPKVFII 935
             + + +V ++
Sbjct: 1206 LLGKDEVQVV 1215


>gi|293365449|ref|ZP_06612158.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037]
 gi|291315817|gb|EFE56261.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037]
          Length = 1217

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 159/1031 (15%), Positives = 333/1031 (32%), Gaps = 140/1031 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQ 60
            K  F    ++  E I + LW +  F    ++              + +    +   +Q  
Sbjct: 228  KADFANEKDKQTEQIKQALWDMESFFRYHLDNDAKEFPKAAYLEAVQQVLDEISSLNQES 287

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNT 116
              +   ++LS      K    + +           L +     +     +  ++ D+   
Sbjct: 288  DSQAYQAVLSRVVAISKEKNGRALANSSRKADLKPLADAYNDERKTQFAKLGQLLDQITI 347

Query: 117  YKMFKS-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                      +  LAK            Y E K++    +F D+   T ++L+       
Sbjct: 348  LDYQGRYHKDTWDLAKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILENFP---Q 404

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +R    +  + +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY 
Sbjct: 405  VREAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYR 453

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F  A+P+    + +   +      ++  +I L  +FRS++++L+  + VF    + +   
Sbjct: 454  FRQADPQIFNEKFQRYAQ----NPKEGKLILLKENFRSSSEVLSATNDVFGRLMDQEVGE 509

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             +  +  +   +            + +         ++E   +      +        R 
Sbjct: 510  INYDSMHQLVFANTKLAPNPDNKAEFLLYDKDDSGQEEEESQTESKLTGEM-------RL 562

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +   I  +            + +  K+I +L   R              ++Y I V  + 
Sbjct: 563  VIKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDG 609

Query: 409  RFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                    L ++ ++   R I +   D + V ++KSP+F+F ED++ ++  Q+ E +   
Sbjct: 610  EQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFSFDEDELARLSLQKIEDKAQE 669

Query: 468  EYIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
               +K  N                  K    +  +      A+  S +D    I   +  
Sbjct: 670  NLYEKLVNAQKLATSQKNLIYTALAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFY 729

Query: 514  RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSAN 568
                 +   G      L        + E++++  L   I  ++Q           A +  
Sbjct: 730  YDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEVQHDLASVAVAPP 789

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------P 616
             + V ++T+H +KGLE P VF+++          +  + +                    
Sbjct: 790  KDAVELLTIHKSKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVE 849

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-- 674
                   +    +   +   K L+ ++  E  RLLYV MTRA  +L +    +    +  
Sbjct: 850  AHYPKTIKLSIPSLTYTQNEKELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAK 909

Query: 675  -----------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                               N + W   +   F  D      +             +    
Sbjct: 910  EYPAANNGKLDSNTRLQARNFQDWVWAISKVFTKDNLNFSYRFVGEDLLTREAIGQLENK 969

Query: 718  HP----ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----- 768
             P          + ETIK+ ++  K  +   +  +  I  P +  PS I    +      
Sbjct: 970  SPLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDME 1029

Query: 769  -------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
                                  S          G   H+L+Q I  + +    +   +  
Sbjct: 1030 GVEITNQTQSSEKKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLIQQPTLASLTETL- 1088

Query: 810  TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSC--DSYSEVSVSG--KINCPKKDIII 864
                          + L  I    +  +    ++     Y E   S   K    K+D ++
Sbjct: 1089 --KQVQTSPAVRDKINLSKILAFFDTALGQEILANTSHLYREQPFSMLKKDQKSKEDFVV 1146

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
             G +D   + +  I +F+YKT  +   E   +   +  QL++Y + L  +Y  +++   L
Sbjct: 1147 RGILDGYLLYEDRIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYL 1204

Query: 925  IYVSEPKVFII 935
            I + + +V ++
Sbjct: 1205 ILLGKDEVQVV 1215


>gi|293572573|ref|ZP_06683547.1| recombination helicase AddA [Enterococcus faecium E980]
 gi|291607356|gb|EFF36704.1| recombination helicase AddA [Enterococcus faecium E980]
          Length = 1240

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 163/1001 (16%), Positives = 327/1001 (32%), Gaps = 130/1001 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97
                 + + + +A     +EE ++ L     +   + +K  +       + +  K+  L 
Sbjct: 259  AGEQLQIKNIYEAFSQDRLEEAYASLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +++ KS       +    T K          + +     +   K++  VLDF DL     
Sbjct: 319  QQISKSYFPVSPSQIEELTEKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378

Query: 158  DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +L ++   AW+         ++   +++DE QD + +Q  ++  L E          + 
Sbjct: 379  QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIYSF  A+P   + +     K+     +    I L  +FRS  ++L+ 
Sbjct: 432  GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +     +            Q   +++     Q   + E  T   
Sbjct: 487  TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390
                 E    +        I  +I +  +  + K    R I+ KDI++L   +K+   I 
Sbjct: 547  LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + + L     I +  ND         I+ +++L + I +   D+    +L+SP+    E
Sbjct: 603  EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPVVGLIE 658

Query: 451  DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             ++  I          + V+ Y     +   +K +H  K +     +A+  S  D    I
Sbjct: 659  PELASIRLADRAHTYYDAVFAYQASNEDELAAKLEHFGKQLDHWRELARRSSITDLLWDI 718

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +  +    G +    L   ++     EQ+S+  L + +  +E+     K    
Sbjct: 719  YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778

Query: 567  A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N VR+MT+H +KGLE PVVFL+D   +        +      L          
Sbjct: 779  PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673
             +          +    +     E  R LYVG+TRA  +L I        +         
Sbjct: 839  TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898

Query: 674  -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS------------------I 704
                       +   + +  + +         ++K                         
Sbjct: 899  DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEVSTSLLQDSNAQFSISWMNQ 958

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                      +     N   + +E    L D  +       P +         + S I  
Sbjct: 959  QTIIEQRQLLAEKELVNLDEQMKEKETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018

Query: 765  KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791
              +   ++  S                                        G   H LLQ
Sbjct: 1019 LFEDPDDTQESRLTLESSQTKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078

Query: 792  VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848
            ++   +P  +  N       K   +      K  + SI    +  +    ++   +   E
Sbjct: 1079 LLPLEMPTTESINQKLQELVKKRLIDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138

Query: 849  VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895
               S  ++           + +++I G +D     + ++ I+++KT        P EI+ 
Sbjct: 1139 QPFSMLLSADEVFQDYPNQEDELLIHGIVDGYLEEKDHLHIYDFKTDFILHPDDPAEIDA 1198

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
            I   +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 1199 IVQKYQGQLRLYQQAMTEAL-NKPVENVFLILLRVKRIINI 1238


>gi|242373134|ref|ZP_04818708.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
            M23864:W1]
 gi|242349085|gb|EES40686.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
            M23864:W1]
          Length = 1218

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 147/955 (15%), Positives = 306/955 (32%), Gaps = 128/955 (13%)

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
            T +   +     ++      +L  ++K +         + +  K+         + K + 
Sbjct: 291  TNEGMEEALNDAKKHYDHYKELVTEVKNNYFSRSAEDLKLDMQKLAPRVAYLAQIVKDVI 350

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              + + K+   +LDF D       +L   D   + I     +    IL+DE QDT+ +Q 
Sbjct: 351  EAFSKQKRSRNLLDFADYEHFALQILTNEDGTPSHIAETYREHFKEILVDEYQDTNRVQE 410

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +++  +       K        LF VGD KQSIY F  A+P   + +         ++G 
Sbjct: 411  KILSCI-------KTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFTCDGQDSG- 462

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +I+L  +FRS  ++L+  + +F     EN   ++ D    + + +        VQL 
Sbjct: 463  --MVIDLSQNFRSRQEVLSTTNYLFKHMMDENVGEITYDDAAQLYYGAPYDQAENPVQLR 520

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKR 369
              + +  +S                   + +   A  I   + ++I    ++    G  R
Sbjct: 521  ALIEADKES----------------SDLTGSEQEADYIVEQVKDIIENRQVYDMKYGTYR 564

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                KDI++L R   +        +    +  I      +    +   ++ +++  R + 
Sbjct: 565  NATYKDIVILERNTDNARN----LQQAFKNSDIPFHVKSKKGYFEQTEVRLVLSFLRTVD 620

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQH 483
            +   D+  V +++S ++ F+ED++ +I          Y+ I+ + N          K + 
Sbjct: 621  NPLQDIYLVGLMRSVIYQFTEDELAEIRVISPNDIYFYQSIEHYINDDNANAQLVDKLKR 680

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQN 542
             IK I +    +Q    +             Q F    G +     L   +N  +  E +
Sbjct: 681  FIKDIKKYQIYSQSEPVYQLIDKFYNDHFVIQYFSGLLGGKGRRANLYGLINKAIEFENS 740

Query: 543  SYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            S+  L + I  +++     +     N      N VR+MT+H++KGLE P V       + 
Sbjct: 741  SFRGLFQFIRFIDELIDRGRDFGEENIVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKY 800

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                  K + +               +    +           K    E  RL+YV +TR
Sbjct: 801  NESDLTKPVILNQQYGLGMDYFDTEKEMIYPSLSSVAYRAINSKEHISEEMRLIYVALTR 860

Query: 658  ASDQLIICKHSNTSNE---------------------KKSNQRTWYDMVYDSFHNDERVK 696
            A +QLI+        E                      K++ +  Y ++           
Sbjct: 861  AKEQLILIGRVKKEKELTDLEQLAISGNHIAVNERLTAKNSFKLIYSILAKHQSASLPHD 920

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM------------------DEQK 738
            +    +    +  +    S        +  EE   +                     +  
Sbjct: 921  QKFEQDIETLNSEMKPRVSIVVDHYEDVSTEEVTPENERRTVSDIDDINSGNDDVKAKIH 980

Query: 739  IPKKLFSPIKNDINEPYILNPSTID-----------------------TKGKTNLESLLS 775
                   P + D  +P   + S +                        T  +    S   
Sbjct: 981  QQLTYQYPYQEDTLKPSKQSVSELKRQLETEESDTNYDRVRQYRIGVATYERPRFLSQNK 1040

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL---LLSITRLL 832
              +    G ++H ++Q +        +  +  Y  +  +    +E          +   +
Sbjct: 1041 KRKANEIGTLMHTVMQHLPFKEGRMTREELDQYVDELIERNIIEEDAKADIKFDEMMSFI 1100

Query: 833  ENPMMTTAMSCD-SYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYK 884
            E+ +       D  Y+E+          ++   ++D+ II G ID I       +  +YK
Sbjct: 1101 ESDLYMQIAQADKVYTELPFVVNQAKVDQLPESEEDVSIIQGMIDLIFQKDGAYYFVDYK 1160

Query: 885  THH-------HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            T            +  + +   +  Q+  Y   L+       +   L +     +
Sbjct: 1161 TDAFNRRKGMTDDEIGQQLKEKYQIQMKYYRNTLETILKQ-PVQGYLYFFKFGML 1214


>gi|27467582|ref|NP_764219.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC
            12228]
 gi|81842983|sp|Q8CPT9|ADDA_STAES RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|27315126|gb|AAO04261.1|AE016746_51 ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC
            12228]
          Length = 1224

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 152/944 (16%), Positives = 307/944 (32%), Gaps = 129/944 (13%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
             K   L  K+K           + +  ++         + + +   +   K+   +LDF 
Sbjct: 313  DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 372

Query: 151  DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D       +L   D   + I     +    IL+DE QDT+ +Q +++  +       K  
Sbjct: 373  DYEHFALCILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 425

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  LF VGD KQSIY F  A+P   + +          +G     I+L  +FRS  +
Sbjct: 426  EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 482

Query: 270  ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +L+  + +F     E    +S D    +   +        VQL   V +  ++       
Sbjct: 483  VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 535

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385
                        + +   A  I   + ++I    ++    G+ R    KDI++L R    
Sbjct: 536  ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 586

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                    +    +  I    N +    +   ++ +++  R I +   D+  V +++S +
Sbjct: 587  ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 642

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
            + F+E+++ +I       +  Y+ I+ +            K    I+ I +  + +Q   
Sbjct: 643  YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 702

Query: 500  PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
             +             Q F    G +     L    N  +  E +S+  L + I  +++  
Sbjct: 703  VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 762

Query: 559  PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
               K     N      N VR+MT+H++KGLE P V       +         + +     
Sbjct: 763  DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 822

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN- 672
                           +          +K    E  RL+YV +TRA +QLI+         
Sbjct: 823  LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 882

Query: 673  ----------------------------------EKKSNQRTWYDMVYDSFHNDERVKKI 698
                                              + +S                    K 
Sbjct: 883  LIKYEQLAVSDTHIAVNERLTATNPFVLIYGVLAKHQSPSLPNDQRFERDIDQLNSEVKP 942

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE--QKIPKKLFSPIKNDINEPYI 756
            +++  I+  E ++ E   +  E   +E  + I    ++   KI ++L       +N    
Sbjct: 943  RVSIVIDHYEDVSTEEVVNDNEIRTIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKP 1002

Query: 757  LNPSTIDTKGKTNLES-------------------------LLSDNQTFNRGLIIHKLLQ 791
               S  + K +   E                               +    G ++H ++Q
Sbjct: 1003 SKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQ 1062

Query: 792  VIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYS 847
             +    +   K+ +  Y  +  + +L      +++ +  I   ++ P+      + + Y+
Sbjct: 1063 HLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYT 1122

Query: 848  EVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE-- 894
            E+           +    +D+ II G ID I  S    +  +YKT          + E  
Sbjct: 1123 ELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIG 1182

Query: 895  -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
              +   +  Q++ Y   L+     + +   L +     +  I  
Sbjct: 1183 NQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1224


>gi|307703405|ref|ZP_07640347.1| recombination helicase AddA [Streptococcus oralis ATCC 35037]
 gi|307622812|gb|EFO01807.1| recombination helicase AddA [Streptococcus oralis ATCC 35037]
          Length = 1092

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 159/1031 (15%), Positives = 333/1031 (32%), Gaps = 140/1031 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQ 60
            K  F    ++  E I + LW +  F    ++              + +    +   +Q  
Sbjct: 103  KADFANEKDKQTEQIKQALWDMESFFRYHLDNDAKEFPKAAYLEAVQQVLDEISSLNQES 162

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNT 116
              +   ++LS      K    + +           L +     +     +  ++ D+   
Sbjct: 163  DSQAYQAVLSRVVAISKEKNGRALANSSRKADLKPLADAYNDERKTQFAKLGQLLDQITI 222

Query: 117  YKMFKS-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                      +  LAK            Y E K++    +F D+   T ++L+       
Sbjct: 223  LDYQGRYHKDTWDLAKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILENFP---Q 279

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +R    +  + +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY 
Sbjct: 280  VREAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYR 328

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F  A+P+    + +   +      ++  +I L  +FRS++++L+  + VF    + +   
Sbjct: 329  FRQADPQIFNEKFQRYAQ----NPKEGKLILLKENFRSSSEVLSATNDVFGRLMDQEVGE 384

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             +  +  +   +            + +         ++E   +      +        R 
Sbjct: 385  INYDSMHQLVFANTKLAPNPDNKAEFLLYDKDDSGQEEEESQTESKLTGEM-------RL 437

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +   I  +            + +  K+I +L   R              ++Y I V  + 
Sbjct: 438  VIKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDG 484

Query: 409  RFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                    L ++ ++   R I +   D + V ++KSP+F+F ED++ ++  Q+ E +   
Sbjct: 485  EQNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFSFDEDELARLSLQKIEDKAQE 544

Query: 468  EYIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
               +K  N                  K    +  +      A+  S +D    I   +  
Sbjct: 545  NLYEKLVNAQKLATSQKNLIYTALAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFY 604

Query: 514  RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSAN 568
                 +   G      L        + E++++  L   I  ++Q           A +  
Sbjct: 605  YDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEVQHDLASVAVAPP 664

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------P 616
             + V ++T+H +KGLE P VF+++          +  + +                    
Sbjct: 665  KDAVELLTIHKSKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVE 724

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-- 674
                   +    +   +   K L+ ++  E  RLLYV MTRA  +L +    +    +  
Sbjct: 725  AHYPKTIKLSIPSLTYTQNEKELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAK 784

Query: 675  -----------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                               N + W   +   F  D      +             +    
Sbjct: 785  EYPAANNGKLDSNTRLQARNFQDWVWAISKVFTKDNLNFSYRFVGEDLLTREAIGQLENK 844

Query: 718  HP----ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----- 768
             P          + ETIK+ ++  K  +   +  +  I  P +  PS I    +      
Sbjct: 845  SPLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDME 904

Query: 769  -------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
                                  S          G   H+L+Q I  + +    +   +  
Sbjct: 905  GVEITNQTQSSEKKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLIQQPTLASLTETL- 963

Query: 810  TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSC--DSYSEVSVSG--KINCPKKDIII 864
                          + L  I    +  +    ++     Y E   S   K    K+D ++
Sbjct: 964  --KQVQTSPAVRDKINLSKILAFFDTALGQEILANTSHLYREQPFSMLKKDQKSKEDFVV 1021

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
             G +D   + +  I +F+YKT  +   E   +   +  QL++Y + L  +Y  +++   L
Sbjct: 1022 RGILDGYLLYEDRIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYL 1079

Query: 925  IYVSEPKVFII 935
            I + + +V ++
Sbjct: 1080 ILLGKDEVQVV 1090


>gi|293378777|ref|ZP_06624934.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1]
 gi|292642570|gb|EFF60723.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1]
          Length = 1240

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 160/1001 (15%), Positives = 325/1001 (32%), Gaps = 130/1001 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97
                ++ + + +A     +E+ ++ L     +   + +K  +       + +  K+  L 
Sbjct: 259  AGEQQQIKNIYEAFSQDRLEDAYASLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +++ KS       +    T K          + +     +   K++  VLDF DL     
Sbjct: 319  QQISKSYFPVSPSQMEELTEKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378

Query: 158  DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +L ++   AW+         ++   +++DE QD + +Q  ++  L E          + 
Sbjct: 379  QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIYSF  A+P   + +     K+     +    I L  +FRS  ++L+ 
Sbjct: 432  GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +     +            Q   +++     Q   + E  T   
Sbjct: 487  TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLIT 390
                 E    +        I  +I +  +  + K    R I+ +DI++L   +K+   I 
Sbjct: 547  LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKDRPIEYRDIVLLTPTKKNNLTIL 602

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + + L     I +  ND         I+ +++L + I +   D+    +L+SP+    E
Sbjct: 603  EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPVVGLIE 658

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             ++  I             +   A+       K +H  K +     +A+  S  D    I
Sbjct: 659  PELASIRLADRAHTYYDAVLAYQASNEDELAVKLEHFGKQLDHWRELARRSSITDLLWDI 718

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +  +    G +    L   ++     EQ+S+  L + +  +E+     K    
Sbjct: 719  YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778

Query: 567  A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N VR+MT+H +KGLE PVVFL+D   +        +      L          
Sbjct: 779  PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673
             +          +    +     E  R LYVG+TRA  +L I        +         
Sbjct: 839  TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898

Query: 674  -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS------------------I 704
                       +   + +  + +         ++K                         
Sbjct: 899  DHEELVFDPELRLKGRSSLMNWIGYGLIRHPEMQKYLEEEVSTSLLQYSNAQFSISWMNQ 958

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                      +     N   + +E    L D  +       P +         + S I  
Sbjct: 959  QSIIEQRQLLAEKELVNLDQQVKEKETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018

Query: 765  KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791
              +   ++  S                                        G   H LLQ
Sbjct: 1019 LFEDPDDTQESRLTLESSQTKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078

Query: 792  VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848
            ++   +P  +  N       K   +      K  + SI    +  +    ++   +   E
Sbjct: 1079 LLPLEMPTTESINQKLQELVKKRLIDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138

Query: 849  VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895
               S  ++           + +++I G +D     + ++ I+++KT        P EI+ 
Sbjct: 1139 QPFSMLLSADEVFQDYPNQEDELLIHGIVDGYLEEKDHLHIYDFKTDFILHPDDPAEIDA 1198

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
            I   +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 1199 IVQKYQGQLRLYQQAMTEAL-NKPVENVFLILLRVKRIINI 1238


>gi|82750584|ref|YP_416325.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122]
 gi|123548876|sp|Q2YWW4|ADDA_STAAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|82656115|emb|CAI80524.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122]
          Length = 1217

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 148/939 (15%), Positives = 295/939 (31%), Gaps = 128/939 (13%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            KK   L +K+K           + +  ++         + K + + +   K+   +LDF 
Sbjct: 308  KKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFS 367

Query: 151  DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D       +L   D   + I     Q    IL+DE QDT+ +Q +++  +       K  
Sbjct: 368  DYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCI-------KTG 420

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  LF VGD KQSIY F  A+P   + + +         G     ++L  +FRS  +
Sbjct: 421  DEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTG---RRMDLSQNFRSRKE 477

Query: 270  ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +L+  + +F     E    ++ D +  + + +        V L   + +  +        
Sbjct: 478  VLSTTNYIFKHMMDEQVGEVNYDESAQLYYGAPYDESDHPVNLKVLIEADQEH------- 530

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKD 385
                        + +   A  I   + +++    ++       R    KDI++L R    
Sbjct: 531  ---------SDLTGSEQEAHFIVEQVKDILEHQKVYDMKTRSYRSATYKDIVILERSFGQ 581

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                    +    +  I    N R    +   ++  ++  R I +   D+  V +++S +
Sbjct: 582  ARN----LQQAFKNEDIPFHVNSREGYFEQTEVRLALSFLRAIDNPLQDIYLVGLMRSVI 637

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
            + F ED++ +I       +  Y+ I  + N          K +  +  I      ++   
Sbjct: 638  YQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHP 697

Query: 500  PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
             +             Q F    G       L    N  +  E +S+  L + I  +++  
Sbjct: 698  VYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELI 757

Query: 559  PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
               K     N      N VR+MT+H++KGLE P V               + + +     
Sbjct: 758  ERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFG 817

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                      +    +          +K    E  RL+YV +TRA +QL +         
Sbjct: 818  LGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKS 877

Query: 674  ---------------------KKSNQRTWYDMVYDSFHN--DERVKKIKLTNSINKDEWI 710
                                   +     Y ++         + +K  K    +      
Sbjct: 878  LLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQVEDSSRP 937

Query: 711  AYEWSTHHPENTPLER----------------EETIKQLMDEQKIPKKLFSPIKNDINEP 754
                S  + E+   E                 +   + +  + K       P  ND  +P
Sbjct: 938  NVNISIIYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYQYPYVNDTKKP 997

Query: 755  YILNPSTI-----------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
               + S +                        T  +    S     +    G ++H ++Q
Sbjct: 998  SKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQ 1057

Query: 792  VIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLENPMMTTAM-SCDSYS 847
             +    E   +  +  Y     +  +  A   K++    I   + + + +    +   Y 
Sbjct: 1058 HLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYR 1117

Query: 848  EVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH---HHVPQEIEH-- 895
            E+          ++    +D+ II G ID I +     +  +YKT           E   
Sbjct: 1118 ELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIG 1177

Query: 896  --IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
              +   +  Q+  Y+  L+    NK +   L +     +
Sbjct: 1178 TQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFKFGTL 1215


>gi|227551328|ref|ZP_03981377.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium
            TX1330]
 gi|257896051|ref|ZP_05675704.1| UvrD/REP helicase [Enterococcus faecium Com12]
 gi|227179539|gb|EEI60511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium
            TX1330]
 gi|257832616|gb|EEV59037.1| UvrD/REP helicase [Enterococcus faecium Com12]
          Length = 1240

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 160/1001 (15%), Positives = 325/1001 (32%), Gaps = 130/1001 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97
                ++ + + +A     +E+ ++ L     +   + +K  +       + +  K+  L 
Sbjct: 259  AGEQQQIKNIYEAFSQDRLEDAYASLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +++ KS       +    T K          + +     +   K++  VLDF DL     
Sbjct: 319  QQISKSYFPVSPSQMEELTEKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378

Query: 158  DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +L ++   AW+         ++   +++DE QD + +Q  ++  L E          + 
Sbjct: 379  QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIYSF  A+P   + +     K+     +    I L  +FRS  ++L+ 
Sbjct: 432  GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +     +            Q   +++     Q   + E  T   
Sbjct: 487  TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLIT 390
                 E    +        I  +I +  +  + K    R I+ +DI++L   +K+   I 
Sbjct: 547  LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKDRPIEYRDIVLLTPTKKNNLTIL 602

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + + L     I +  ND         I+ +++L + I +   D+    +L+SP+    E
Sbjct: 603  EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPVVGLIE 658

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             ++  I             +   A+       K +H  K +     +A+  S  D    I
Sbjct: 659  PELASIRLADRAHTYYDAVLAYQASNEDELAVKLEHFGKQLDHWRELARRSSITDLLWDI 718

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +  +    G +    L   ++     EQ+S+  L + +  +E+     K    
Sbjct: 719  YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778

Query: 567  A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N VR+MT+H +KGLE PVVFL+D   +        +      L          
Sbjct: 779  PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673
             +          +    +     E  R LYVG+TRA  +L I        +         
Sbjct: 839  TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898

Query: 674  -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS------------------I 704
                       +   + +  + +         ++K                         
Sbjct: 899  DHEELVFDPELRLKGRSSLMNWIGYGLIRHPEMQKYLEEEVSTSLLQYSNAQFSISWMNQ 958

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                      +     N   + +E    L D  +       P +         + S I  
Sbjct: 959  QSIIEQRQLLAEKELVNLDQQVKEKETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018

Query: 765  KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791
              +   ++  S                                        G   H LLQ
Sbjct: 1019 LFEDPDDTQESRLTLESSQTKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078

Query: 792  VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848
            ++   +P  +  N       K   +      K  + SI    +  +    ++   +   E
Sbjct: 1079 LLPLEMPTTESINQKLQELVKKRLIDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138

Query: 849  VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895
               S  ++           + +++I G +D     + ++ I+++KT        P EI+ 
Sbjct: 1139 QPFSMLLSADEVFQDYPNQEDELLIHGIVDGYLEEKDHLHIYDFKTDFILHPDDPAEIDA 1198

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
            I   +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 1199 IVQKYQGQLRLYQQAMTEAL-NKPVENVFLILLRVKRIINI 1238


>gi|259046745|ref|ZP_05737146.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens
            ATCC 49175]
 gi|259036641|gb|EEW37896.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens
            ATCC 49175]
          Length = 1231

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 161/1028 (15%), Positives = 314/1028 (30%), Gaps = 133/1028 (12%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             L     + V+  ++ +      G P      +      +   +  +       + T + 
Sbjct: 222  ALIEELSYLVTQYDQLLKEIELLGAPKHQAVLEDDLDFVKAVLVHIQEESYVFAYQTFED 281

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT--------------YKMFKSTL 124
               KN  T ++++   +  +++K  +++  K   +                  K+ +   
Sbjct: 282  RKFKNWSTAKVDETVKESLDEIKAIREDLKKDFQKIKEDYFVISPEVQLQQMTKVNRILS 341

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDVSAWIRYKIDQEINHILI 182
                +A      +++ K +   LDF DL  +T  +L    ++               +++
Sbjct: 342  KLSDIAVMFYDRFQDEKHQLNKLDFSDLEHDTLRILTKLDQNGLKIASEYYQNHFKEVMV 401

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD + +Q  V+  +           + P   F VGD KQSIY F  A+P     +  
Sbjct: 402  DEYQDVNRVQEAVLELV-----------NKPDNRFMVGDVKQSIYGFRLADPSLFREKYE 450

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                     G+    I L  +FRS  ++L+  +KVF    N +    +       ++  +
Sbjct: 451  AY-----AEGKCGERIVLAENFRSRDEVLSFTNKVFQQIMNKELGQVEYDDVAALKTGNL 505

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                      +++   D   +   +           E+    +A+RI   I         
Sbjct: 506  SYSQDDDKSSEIILIEDVDLDESTDDLEDAEGFEKVENEIHYVAQRIQEMIHTPFEVMND 565

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
             ++ K R +   D  +L   + +   I  +       Y I V             I  ++
Sbjct: 566  KADAK-RSVNYGDFAILSSTKSNNDKIESIFAA----YGIPVNVQKAQSYFKRTEITTMV 620

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN------- 475
            +L + I +   D+  V +L+S L    E  +  I T    T       Q  ++       
Sbjct: 621  SLLKVIDNPLQDIPLVAVLRSGLVGLDEIALAHIRTSSKNTSYYEAVCQFISDFKLKDVD 680

Query: 476  --------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVI 526
                        + +  +  +++    A   S       I       +       G +  
Sbjct: 681  YYDSKQQLAIKERLESFLTLLNKWRDSANNESIAQLIWEIYMDTHYLEYVHGQSNGTQRA 740

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKG 582
              L        + E +S+  ++  I  +E      K    A    + N V++MT+H +KG
Sbjct: 741  VNLHALYEHAHQYESSSFKGVRNFIRFIEALQKKEKDLDEAPIATDSNAVQVMTIHASKG 800

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PVVFL+DT  +         +     +           +               KK 
Sbjct: 801  LEFPVVFLIDTNRKFNMQDLKASIMCSDEIGVGTNYFDLSTRITYPTVQAVATRNFEKKK 860

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT---------------------W 681
               E  R LYV MTRA ++LII          K                           
Sbjct: 861  LLSEEMRKLYVAMTRAREKLIIVGTIKNYESFKKKYAFLMNESSEILPYQARFKSSTFLN 920

Query: 682  YDMVYDSFHNDERVKKIKLTNSIN----------------KDEWIAYEWSTHHPENTPLE 725
            + ++       +   +I     I                 +++W  Y    + P    + 
Sbjct: 921  WMLLSAIREQYKITPEIVAKADIVSNSKHYIHEISDKEVFQEDWHEYYNEANSPGELKVR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYIL-------------------NPSTIDTKG 766
             +  +K +  + +   +  +     ++E   +                       +    
Sbjct: 981  VQSMLKTIQQDYQFYVESKTTSYQSVSELKRVLEDPIIEELSQNSLIEEGRRAIYLSPSL 1040

Query: 767  KTNLESLLSDNQ--TFNRGLIIHKLLQVIFTLPE---HKRKNFITSYCTKNAKLWPAKEY 821
            +       S        RG  +H L+Q +           +  + S    N  + P    
Sbjct: 1041 EQPRFMETSSTTVSGAQRGSALHLLMQKVDFTSTITLDSLEQLLESLVESNE-ITPEVAA 1099

Query: 822  KNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINC--------PKKDIIISGRIDQI 871
            K  +       ++      +        E + S  +              ++I G ID  
Sbjct: 1100 KVPVTQAFEFFQSTFGQWIVQNSHALVREQAFSYVLEASKFFKSIQTDDLMMIHGIIDGY 1159

Query: 872  SISQQNIFIFEYKTHHHVP--QEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVS 928
                  I +F+YKT + V   + I+ I   +  QL+IY   L     NK +   +L  +S
Sbjct: 1160 VELDDEIIVFDYKTDYVVDSIEGIQSIVRKYKDQLNIYADALS-ISCNKKVTKKVLCLLS 1218

Query: 929  EPKVFIIP 936
              K   I 
Sbjct: 1219 INKNIDID 1226


>gi|331082717|ref|ZP_08331840.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400336|gb|EGG79978.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1224

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 165/1045 (15%), Positives = 343/1045 (32%), Gaps = 148/1045 (14%)

Query: 2    KNRFGLSLNESYE------LIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-----LKKA 50
            +  + +   E  E      LI  ++          + + + +S E   P         + 
Sbjct: 196  RKAYEVESIEELENAEWMKLIKNEVKQEIKEASMLLKQSLEVSKEPDGPAFYIGLLEDEV 255

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
              L+++ QT+C  E   +L      +    +K         +    K    +++++   +
Sbjct: 256  SALEKSEQTECFFEWKEMLDKLEFKRLPAGKKAEKELVSESRQELAKNLRNEAKEQIKAL 315

Query: 111  RDRF----------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
            ++R+          N  +  +     + L       Y+E KK+  +LDF DL     ++L
Sbjct: 316  KERYFQETAEEMLENLQRAGEPVGVLVDLTLAFMKLYKEKKKEKNILDFGDLEHYALEIL 375

Query: 161  ----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                K++D       ++ ++   I+IDE QD++L+Q +++                   +
Sbjct: 376  IHHTKEKDERTDAARELSKKFEEIMIDEYQDSNLVQEKLL-------TSVSRIEDGIYNI 428

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F VGD KQSIY F  A P          +     AG     I+L  +FRS A++L  V+ 
Sbjct: 429  FMVGDVKQSIYRFRLARPDL---FMEKFKTYPQEAGGDCLRIDLHRNFRSRAEVLEGVNY 485

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
            +F           +   T               L+   +     +   +  +     +  
Sbjct: 486  LFYQIMGEDLGGVEYDRTAA-------------LYPGKIFPSKPEEEKEPATEVLLLEDD 532

Query: 337  PQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLITFLTR 394
             +E +    AR +A+ I  ++G   +      + R  +  D  +L+R            +
Sbjct: 533  EEEITRESEARAVAWRIGELVGNYLVLDKKTEEYRPAKYSDFTILLRTMSGWA---ETFK 589

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
             + N   I      +        +  ++   + + +   D+     L      F+  ++ 
Sbjct: 590  KILNSCGIPASVTTKTGYFSAQEVMTVLDYLKILDNPMQDIPLAAALHGLPDGFTFQELA 649

Query: 455  KICT--QRHETETVYEY---IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
            +I      +E  + YE     +  ++    K +       +L     +   H+       
Sbjct: 650  EIKVLGMENEKSSFYEALLLGENLSSPLGEKIRKFFAVYRKLRGKVPYTPMHELIWDFYD 709

Query: 510  AKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKR 563
            A        +   G +    L          E  SY  L   I  +E     Q       
Sbjct: 710  ATNFLVYQQAFVSGEQRKANLLMLAEKARDYESTSYRGLFNFIRYIENLKKYQVDFGEAN 769

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
              S N + VRIM++H +KGLE P+VF+   G Q+      + M + P L           
Sbjct: 770  ILSENEDTVRIMSIHGSKGLEFPIVFVAGMGKQMNMQDTRENMVLHPELGIGSPYIDTQL 829

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK--------- 674
            + ++R  +   + + +   +  E  R+LYV +TRA ++LI+    +   +          
Sbjct: 830  RIRTRTILQKAVQREILLESLGEELRILYVALTRAKEKLILTGVISKLEDTLKSFEMLKK 889

Query: 675  ----------KSNQRTWYDMVYDSFHNDERVKK--------IKLTNSINKDEWIAYEWST 716
                      +   +++ D V  +      +          +   N +   E        
Sbjct: 890  HGEERMPYGLRVKGKSYLDWVLKALARHRSMTPFYKRYHLSVYPFNDMYDREPDFTVRQI 949

Query: 717  HHPENTPLEREETIKQLMDEQKIPKK-------------------LFSPIKNDINEPYIL 757
               E    E +   ++++ + ++                         P + +   P  L
Sbjct: 950  SSLELVLDEAQLRTEEMLKKGELLLWDSKEVYDEKWRELFQDSFSYEYPYQAEGTIPAKL 1009

Query: 758  NPSTIDTKGKTNLE--------------------SLLSDNQTFNRGLIIHKLLQVIFTLP 797
              S +    K ++E                       ++ +   RG + H++ + +    
Sbjct: 1010 TVSEVKRMQKEDMEESEILLEEKETEEIVPLFMQETKAELKGAARGTLYHRVWEKL-DYG 1068

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLL-----LSITRLLENPMMTTAMSCDSYSEVSVS 852
            +   K  I         +  A+E K++            L   M         Y E    
Sbjct: 1069 KIDTKEQIEKQLE---HILTAEEKKSIWIPDFYCFAKSSLAGRMKEAYQRGQLYREQPFV 1125

Query: 853  GKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
              +           +++I++ G ID     +  + + +YKT      + + +   +I Q+
Sbjct: 1126 IAMPANQIREEYKTEEEILVQGIIDAYFEEEDGLVLVDYKTDKVQKGQEKELVEKYIVQM 1185

Query: 905  SIYEKILKDSYPNKSLVCLLIYVSE 929
              Y+K L+    +K +  + IY S 
Sbjct: 1186 QYYKKALEMI-TDKEVKEIYIYSSG 1209


>gi|121535716|ref|ZP_01667519.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1]
 gi|121305681|gb|EAX46620.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1]
          Length = 1246

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 146/1050 (13%), Positives = 311/1050 (29%), Gaps = 146/1050 (13%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNP-----TILKKAQTLQQASQTQ--CIEER 65
              L+   +            +  + ++  GNP     T+      L  A         E 
Sbjct: 211  EALLADRIALELERLQHKFARLAAEAVRPGNPAAYVKTLEDDRGQLDWAIAAARHSWREL 270

Query: 66   FSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF--- 120
             + L+          +     + +   ++   +K K+K+  + +    ++     M    
Sbjct: 271  GAALNGLKFGTLPAAKGVDAAVCKRFQERRNTIKSKVKEIAERYFGRPEQELIADMRAQL 330

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK------KRDVSAWIRYKID 174
                  + L       ++EAKK   ++DF DL      +L            + +   + 
Sbjct: 331  PLVETLIDLVLAFGQRFQEAKKAKGLVDFSDLEHYCLQILLADNATPDNIQPSAVALALR 390

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            ++   +L+DE QDT+ +Q  ++  ++                F VGD KQSIY F  AEP
Sbjct: 391  EKYEEVLVDEYQDTNAVQETILELVS---------RPDRPNRFMVGDVKQSIYRFRLAEP 441

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               L +       A  +      I+L  +FRS   IL  V+ +FS     +         
Sbjct: 442  GLFLEKYNRYPAAAGGSE---RRIDLAQNFRSRPGILAAVNFLFSQLMTPRAAEMGYGAA 498

Query: 295  IRHRSSRIGQV-------GTVQLW-----------------EQVVSQHDSQCNPQQESWT 330
                              G V++                  E    Q D+     + + +
Sbjct: 499  EALNPGPDYPPCDQLTLAGPVEVHLINQAEAVAAAPAADVVEDEAEQQDADAGGDEPANS 558

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTP 387
            S   +  + ++    A  IA  +  +     +  +      R +  +DI++L+R  +   
Sbjct: 559  SELVTAQELTAFEREAWLIARRLLALKEAGHVVYDKHDKAYRPLAWRDIVILLRTVQGKA 618

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
             +      +     I    +      +   ++ +++L   I +   D+    +L+SPL  
Sbjct: 619  GV---LLDVLRQAGIPAYADVDGGYFEETEVQVMLSLLAVIDNPRQDIHLAGVLRSPLVG 675

Query: 448  FSEDDIFKICTQRHETETVY---EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
             +  D+  I   +                A     K    ++ +     +A+     +  
Sbjct: 676  LTAGDLAAIRLCKDGDLWTALTAAAGADIAEPLRQKIGVFLERLDRWRSLARRRGVAELI 735

Query: 505  TLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YP 558
              I               G      L    +   + E  ++  L   +  LE+       
Sbjct: 736  WSIYRETGYYDYIGGMPGGALRQANLRVLYDRARQFEATNFRGLFRFLRFLERLRDRGSD 795

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              + RA     + VR+M++H +KGLE PVV L D G Q+      + +     L   P +
Sbjct: 796  MAVARALGEGEDVVRVMSIHKSKGLEFPVVVLADLGKQLNLRDTQELVLCHKELGLGPKV 855

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                 +          +   L    + E  R+LYV +TRA ++LI+        ++ S+ 
Sbjct: 856  IRPDLRDSYPTLARWGIEHKLTLEAKAEELRILYVALTRAREKLILVGSVKKLADRCSDW 915

Query: 679  -------------------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
                               + + D +  +         ++     ++             
Sbjct: 916  CAMVGWQAQALPDALITDAKNYLDWLGPAIVRHPGGAPLRALAGCDETPTAKLAALNAAW 975

Query: 720  ENTPLEREETIKQLMDEQKIPK-----------------------KLFSPIKNDINEPYI 756
            +      +        +                                P    + +P  
Sbjct: 976  QVITHAADSINPVAPAQPADNPLAVCLKELKPLPGGDSAWVAARLDWRYPYAAAVGQPAK 1035

Query: 757  LNPSTID-----------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVI---FTL 796
            L  S I                     +               G  +H ++Q +     +
Sbjct: 1036 LTVSEIKRRFALADQDGEQWYPPRLAARPRFIQTAGKLTAAEVGTAMHTVMQHLNLAGDM 1095

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKI 855
                 +  +         L P +     + +I     +P+    + +     E++    +
Sbjct: 1096 SASGVRRELERLVAAEI-LLPEQAAAVDVEAIAAFFTSPLGQRLLNAAWRRRELAFCQVL 1154

Query: 856  NCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
                         + + I G +D +      + + +YKT          +   +  QL +
Sbjct: 1155 PAASIDPALAGTDETVFIQGVVDCLFAEADGLILIDYKTDQVKDGF--ELVERYDVQLKL 1212

Query: 907  YEKILKDSYPNKSLVCLLIYV-SEPKVFII 935
            Y   ++       +  + +YV S  ++  +
Sbjct: 1213 YAAAMETILRQ-PVKEIYLYVFSTGQIVPV 1241


>gi|306825212|ref|ZP_07458554.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon 071
            str. 73H25AP]
 gi|304432648|gb|EFM35622.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon 071
            str. 73H25AP]
          Length = 1217

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 155/1030 (15%), Positives = 329/1030 (31%), Gaps = 140/1030 (13%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQC 61
              F    ++  E I + LW L  F    ++              + +    +   +Q   
Sbjct: 229  ADFANEKDKLTEQIKQALWNLESFFRYHLDNDAKEFPKAAYLEAVQQVLDEIGSLNQGSD 288

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTY 117
             +    +L+      K    + +           L +     +     +  ++ D+   +
Sbjct: 289  SQAYQEVLARVVAISKEKNGRALANSSRKADLKPLADAYNDERKAQFAKLGQLVDQIAIF 348

Query: 118  KMFKS--------TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
               +         +    T        Y E K++    +F D+   T ++L+       +
Sbjct: 349  DYQERYHGDTWELSKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILENFP---QV 405

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
            R    +  + +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F
Sbjct: 406  RKAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRF 454

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
              A+P+    + +   +      ++  +I L  +FRS +++L+  + VF    + +    
Sbjct: 455  RQADPQIFNEKFQRYAQ----NPKEGKLILLKENFRSNSEVLSATNDVFGRLMDQEVGEI 510

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            +  +  +   +        +   + +         ++E   +      +        R +
Sbjct: 511  NYDSMHQLVFANNKLTPNPENKAEFLLYDKGDSGQEEEESQTETKLTGEM-------RLV 563

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
               I  +            + +  K+I +L   R              ++Y I V  +  
Sbjct: 564  IKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGE 610

Query: 410  FILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                   L ++ ++   R I +   D + V ++KSP+F+F ED++ ++  Q+ E +    
Sbjct: 611  QNNYLQSLEVQVMLDTMRVIHNPLQDYALVALMKSPMFSFDEDELARLSLQKAEDKVQEN 670

Query: 469  YIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
              +K  N                  K    +  +      A+  S +D    I   +   
Sbjct: 671  LFEKLVNAHKQAASQKELIHTDLAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFYY 730

Query: 515  QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH----SANH 569
                +   G      L        + E++++  L   I  ++Q             +   
Sbjct: 731  DYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVTVAPPK 790

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PG 617
            + V +MT+H +KGLE P VF+++          +  + +                     
Sbjct: 791  DAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGTVEA 850

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK--- 674
                  +    +   +   K L+ ++  E  RLLYV MTRA  +L +    +    +   
Sbjct: 851  HYPKTIKLSIPSLTYTQNEKELQLASYSEQMRLLYVAMTRAERKLYLVGKGSREKLEAKE 910

Query: 675  ----------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW---- 714
                              N + W   +   F  D      +             +     
Sbjct: 911  YPIAENGKLDSNTRLQAKNFQDWIWAISKVFARDNLNFSYRFVGEDQLTREAIGQLENKS 970

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT------ 768
            S      T   + ETIK+ ++  K  +   +  +  I  P +  PS I    +       
Sbjct: 971  SLQDRSQTDNRQSETIKEALEMLKEVEVYNTLHREAIELPSVQTPSQIKKFYEPVMDMEG 1030

Query: 769  ------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                                 S          G   H+L+Q I    +        +   
Sbjct: 1031 VQIANQTQSPEKKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLSQQPTLATLEETL-- 1088

Query: 811  KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIIS 865
                         + L  I    +  +    ++     Y E   S   +    ++D ++ 
Sbjct: 1089 -QQVQTSPAVRDKINLSKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVR 1147

Query: 866  GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            G +D   + +  I +F+YKT  +   E   +   +  QL++Y + L  +Y  +++   LI
Sbjct: 1148 GILDGYLLYEDRIILFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYLI 1205

Query: 926  YVSEPKVFII 935
             + + +V ++
Sbjct: 1206 LLGKDEVQVV 1215


>gi|257898678|ref|ZP_05678331.1| UvrD/REP helicase [Enterococcus faecium Com15]
 gi|257836590|gb|EEV61664.1| UvrD/REP helicase [Enterococcus faecium Com15]
          Length = 1240

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 163/1001 (16%), Positives = 327/1001 (32%), Gaps = 130/1001 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97
                ++ + + +A     +EE ++ L     +   + +K  +       + +  K+  L 
Sbjct: 259  AGEQQQIKNIYEAFSQDRLEEAYASLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +++ KS       +    T K          + +     +   K++  VLDF DL     
Sbjct: 319  QQISKSYFPVSPSQIEELTEKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378

Query: 158  DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +L ++   AW+         ++   +++DE QD + +Q  ++  L E          + 
Sbjct: 379  QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIYSF  A+P   + +     K+     +    I L  +FRS  ++L+ 
Sbjct: 432  GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +     +            Q   +++     Q   + E  T   
Sbjct: 487  TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390
                 E    +        I  +I +  +  + K    R I+ KDI++L   +K+   I 
Sbjct: 547  LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + + L     I +  ND         I+ +++L + I +   D+    +L+SP+    E
Sbjct: 603  EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPVVGLIE 658

Query: 451  DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             ++  I          + V  Y     +   +K +H  K +     +A+  S  D    I
Sbjct: 659  PELASIRLADRAHTYYDAVLAYQASNEDELAAKLEHFGKQLDHWRELARRSSITDLLWDI 718

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +  +    G +    L   ++     EQ+S+  L + +  +E+     K    
Sbjct: 719  YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778

Query: 567  A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N VR+MT+H +KGLE PVVFL+D   +        +      L          
Sbjct: 779  PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673
             +          +    +     E  R LYVG+TRA  +L I        +         
Sbjct: 839  TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898

Query: 674  -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS------------------I 704
                       +   + +  + +         ++K                         
Sbjct: 899  DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEVSTSLLQDSNAQFSISWMNQ 958

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                      +     N   + +E    L D  +       P +         + S I  
Sbjct: 959  QTIIEQRQLLAEKELVNLDQQMKEKETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018

Query: 765  KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791
              +   ++  S                                        G   H LLQ
Sbjct: 1019 LFEDPDDTQESRLTLESSQTKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078

Query: 792  VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848
            ++   +P  +  N       K   +      K  + SI    +  +    ++   +   E
Sbjct: 1079 LLPLEMPTTESINQKLQELVKKRLIDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138

Query: 849  VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895
               S  ++           + +++I G +D     + ++ I+++KT        P EI+ 
Sbjct: 1139 QPFSMLLSADEVFQDYPNQEDELLIHGIVDGYLEEKDHLHIYDFKTDFILHPDDPAEIDA 1198

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
            I   +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 1199 IVQKYQGQLRLYQQAMTEAL-NKPVENVFLILLRVKRIINI 1238


>gi|260101292|ref|ZP_05751529.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260084877|gb|EEW68997.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 1204

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 173/995 (17%), Positives = 323/995 (32%), Gaps = 123/995 (12%)

Query: 33   KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92
            K ++   E+           +Q   +    +++  LL S   T  F   K    +++ + 
Sbjct: 240  KELAKVKESFTLFAQNLNNFVQAVKEDDDYDKQRELLRSCVFTINFRKSKKW-DEDLLEF 298

Query: 93   SPDLKEKLKKSQDEFIKI---------RDRFNTYKMFKSTLASLTLAK-YLNAHYEEAKK 142
              +++    +++ +             +++    +  +  + +++ A+  L   + + K+
Sbjct: 299  YNEIQSLKDEAKSQVFDTFTSFYAVTEKEQIKIMQESQKIVTAISTAEIKLIERFNQLKR 358

Query: 143  KNCVLDFEDLIINTNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
               +LD+ D+      +L +    S   R     +   ILIDE QD + +Q  +I+ +  
Sbjct: 359  NENLLDYSDMEQLAYQILSQDTSSSQMARDFYQNKFKEILIDEYQDINALQERIIQQIKS 418

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +            TLF VGD KQSIY F  AEP   L++     +           I L 
Sbjct: 419  E---------KKNTLFMVGDVKQSIYGFRQAEPSLFLQKYHQFAEDENEHE---ERILLS 466

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             +FRST  +   V+ VF    +      D               G +    +   +   Q
Sbjct: 467  DNFRSTEPVTQTVNAVFKSILSTDFGGIDYQKE-----------GQLIFGAKYYPKSLPQ 515

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILV 378
             +          +   +        + +   I  +        +   GK R ++  DI +
Sbjct: 516  ASEVIVHEKKNNNEKSKNEIDFSEIQMVLARIKQLEDEHVQIFDSNTGKMRDMEYSDIAI 575

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            L R R D                I +   D         +  +M   + I + + D+  V
Sbjct: 576  LTRSRSD----NLEIMQEFAKQDIPLFVTDAENYFQTFELTVMMNYLKIIDNPDQDIPLV 631

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--ISKFQHVIKYIHELIHIAQ 496
             +L+SPLFNF E ++ KI  +   +                  K ++ +  + EL   A 
Sbjct: 632  TVLRSPLFNFDEKELAKIRIKSKNSNFYSALTSYVGTNDVLSKKCKNFLNQLAELRSFAT 691

Query: 497  FCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                 +    I       +   +   G +    L+         E   +  L + I+ ++
Sbjct: 692  THRISELIWSIYERTNLLEIMTALPNGEQRRVNLEALYERATSYESAGFKGLYQFINFID 751

Query: 556  QY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +                  N VR+MT+H +KGLE P+VF V                I  
Sbjct: 752  RMRRSQKDLAQPLLTKEAGNAVRLMTIHGSKGLEFPIVFYVGMQHHYQMRDLNGNYII-- 809

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              +D  GI +     +  + + +      K+   EE  R+LYV +TRA  +LI+     +
Sbjct: 810  -NSDSMGITLREQNYRVDSLVKAMGNITKKQQLLEEEARILYVALTRAKQKLILVGDVPS 868

Query: 671  SNEKKSNQRT---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----------- 716
             N+K     T       +              +  S+  D  +A + +            
Sbjct: 869  FNKKVKEWSTELNHAGQLPLINKLSATSPLSFIGPSLRFDRHVAIKLNDITKSIDQSQKI 928

Query: 717  -------------HHPENTPLEREETIKQLMDEQKIPK--KLFSPIKNDINEPYILNPST 761
                            E+T  + E T K  +  Q + K  +   P ++          S 
Sbjct: 929  LFIDYQDEDTKFIKKDEDTDNQNENTSKSALLTQTVNKLYQFNYPFRDASETTAYQAVSE 988

Query: 762  IDTKGKTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIF-T 795
            I       +++ L ++                              G   H +LQ    T
Sbjct: 989  IKKAFNDPIDAELENSHLLTSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHLILQYYDYT 1048

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVS- 852
                   +   +   +  KL P          I   +             +   EV  S 
Sbjct: 1049 NDSADNLDQEIATLIEQKKLNPDIVSSLNKDQIDWFVHGDFAKDFWKEPTNLKREVDFSS 1108

Query: 853  --------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV----PQEIEHIPYTH 900
                       + P   I++ G ID   +++  I +F+YKT H       + IE I   +
Sbjct: 1109 LLSARTLFKDFSDPDAKILVHGTIDGYFVAKNGIILFDYKTDHVNKTNIDKSIELIKEKY 1168

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              QL +YE+ L +    K +   LI +   +V  +
Sbjct: 1169 TGQLRLYEQALNEFSEKKVIGKYLILLDAKQVVEV 1203


>gi|289167909|ref|YP_003446178.1| exonuclease RexA [Streptococcus mitis B6]
 gi|288907476|emb|CBJ22313.1| exonuclease RexA [Streptococcus mitis B6]
          Length = 1216

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 160/1019 (15%), Positives = 330/1019 (32%), Gaps = 141/1019 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++              +      +   +Q    +   ++L+  
Sbjct: 240  EQIQQALWDLENFFRYHLDNDAKEFPKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQITILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  ELAKTFQAFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVREAYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYDNMHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                             + ++     +  TS  +    E+  +   R +   I  +    
Sbjct: 522  NTKL--------TPNPDNKAEFLLYDKDDTSEEEESQTETKLTGEMRLVIKEILKLYKEQ 573

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                      +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 574  ---------GVSFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLALQKAEDKIQENLYEKLVNAQKQ 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K    +  +      A+  S +D    I   +       S   G  
Sbjct: 681  VSSHRNLIHTALAEKLNQFMNILDSWRLYAKTHSLYDLIWRIYNDRFYYDYVGSLPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  + Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIGMINQVLEVQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI---- 636
            KGLE P VF+++          + ++ +             +      ++    +     
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 637  --------KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------- 674
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTHRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAAKNGKLNS 920

Query: 675  -----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D      +             +     P          
Sbjct: 921  NTRLQAKNFQDWIWAISKVFAKDHLNFSYRFVGEDQLTREAIGQLENKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + ETIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSETIKETLEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVD 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q +      +R    +   T           
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRMD---LTQRPTLASLTETLQQVQTSPAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I       +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLSKILAFFNTALGQEILANTNHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYED 1157

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I +F+YKT  +   E   +   +  QL++Y + L  SY  +++   LI + + +V ++
Sbjct: 1158 KIILFDYKTDRY--DEPSQLIARYHGQLALYGEALSRSYSIENIEKYLILLGKDEVQVV 1214


>gi|323704721|ref|ZP_08116299.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536183|gb|EGB25956.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 1073

 Score =  361 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 166/929 (17%), Positives = 318/929 (34%), Gaps = 103/929 (11%)

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNA 135
            K  P K    +    +   L  ++K++      I+  + + +  K+     L + + +  
Sbjct: 166  KKYPSKIFTGKMFQSEVISLYFRMKEAGLSVEDIKLSYESDESTKAMENLALIILEKIEE 225

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            +Y+  K    +LDF DL      LL        IR    +   +IL+DE QDT+ +Q E+
Sbjct: 226  NYKAFKSSKNLLDFNDLETIALKLLSND----IIRNDYFERYRYILVDEFQDTNRLQKEI 281

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            I  LTE      +       LF VGD KQSIY F G + +      R  +          
Sbjct: 282  ILKLTEK-----DGKIPDGKLFIVGDIKQSIYGFRGTDFRIFDEFCRKIEAD-------G 329

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLS-----EDSTTTIRHRSSRIGQ--VGTV 308
             ++ L   +RST +I++ ++ VF                D    +   + +         
Sbjct: 330  KVLNLSNCYRSTKNIISTINDVFKNLIEPYEELKYQSFADEGPKVELITYKKDDIVNEKN 389

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            + ++++        N  + +     D     S      + IA  I  ++G          
Sbjct: 390  ERYKKIKQLLKDDDNKGKLNELLMEDGALANSRKDFQGKIIAGRILKLVGEG-------- 441

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
               + KDI VL+R R     I         D  I           D   I D++++ +  
Sbjct: 442  --FEYKDIAVLLRSRSSLKSIEGAL----ADCGIPYCIIGGIGFWDKREIIDIISVYKLA 495

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---ETETVYEYIQKFANCGISKF--QH 483
                D+++ +  L+SP+F FS+DD+F      +     + +         CG  K+  + 
Sbjct: 496  FDTSDEIALLTALRSPIFGFSDDDLFAFMNIYNGQCIDDPLEALKNFSPKCGDDKWVIKR 555

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQN 542
                + ++  +    +P++ F +IL   + ++  IS   G +    +++  +     E+ 
Sbjct: 556  ACNILDKISKMRGVYNPYEIFKMILKITEYKKLLISLPNGYQKFRNVEKLESIIKSFEEK 615

Query: 543  SYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTG--- 594
                 ++LI  L+    +              N V+IMT+H++KGLE   V + D     
Sbjct: 616  RILDSKDLIEYLDALKESSSLDSEAFLDTEESNAVKIMTIHSSKGLEFDAVIIPDMDKAT 675

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              +   K    M          G+       KS N++  +      +    E  RL YV 
Sbjct: 676  DGISVRKAPLFMLSEEGYIFCIGVNDDGDLDKSENSLYKEEYDRYLEKENMESRRLFYVA 735

Query: 655  MTRASDQLIICKHSN---TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
             TRA   L             ++ S   ++   +  +  +            +       
Sbjct: 736  STRAKKFLAFIGQMKDNIDDIDEDSKLNSFMKQLLFAIKDGCSNIDYIDGTCLQSYAKNK 795

Query: 712  YEWSTHHPENTPLER--------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
             ++     E+    +           +K  +        L  P+         L    ++
Sbjct: 796  LDYVKELNEDADKIKFGGLIDKMPLNVKGNVSVTAYIDYLTCPMFYYYKYIVSLTDEYVE 855

Query: 764  TKGKTNL--ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK---LWPA 818
              G ++              RG I+HK+L+ +         N       +      +   
Sbjct: 856  LDGNSDDIYSESDDKISALERGTIVHKILETLDDDDYIDVSNLNDEIIKRYIDNYYMLRD 915

Query: 819  KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ--ISISQQ 876
            K  K +   + + L+              E      I     +I ++G ID+  I  +  
Sbjct: 916  KHRKKISGRLLKRLK--------------EYKFRAPI---DDNINLNGVIDRIDIYENDG 958

Query: 877  NI--FIFEYKTHHH-VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV--------CLLI 925
            NI  +IF+YKT+      ++E I   +  Q+ +Y  +L+     K++           L 
Sbjct: 959  NIESYIFDYKTNKIDSDDDLEKIARHYTPQIHVYSHVLRRL---KTISGFSPTLKGAFLY 1015

Query: 926  YVSEPKVFIIPQNKL--NKAFAEISTKIP 952
            ++   K   +  + L   +   +I    P
Sbjct: 1016 FLDVGKYVEVDISDLYIMETLEKILKATP 1044


>gi|116494973|ref|YP_806707.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
            casei ATCC 334]
 gi|122263609|sp|Q038V7|ADDA_LACC3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|116105123|gb|ABJ70265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus casei
            ATCC 334]
          Length = 1234

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 162/1041 (15%), Positives = 314/1041 (30%), Gaps = 131/1041 (12%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI------LKKAQTLQQASQTQC 61
            +  +      + +WP    Q+  I   ++ +    N           +A      +  + 
Sbjct: 205  APEKWEATFSQQIWPRVKGQLLQIATSLTQASALANQLPNPIWYQQIQADLAPLQTLLET 264

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE--------------F 107
                +  + S  ++ +F     I ++ ++    D K   K  +D                
Sbjct: 265  NAPTYDTVRSVLISHEFAAWSRI-SKGLDDADKDTKNAAKDLRDAAKKTWQNKLAPTFAL 323

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDV 165
               +      +          +A          K    V D+ D+  N   +L+      
Sbjct: 324  AAEQIGDLLREAQPLVATLANVALKFEDALTAEKAARHVQDYSDIAHNALRILQQKDPQT 383

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             A I        + +++DE QD S +Q  ++ +++          ++P   F VGD KQS
Sbjct: 384  GAPIADNYRASFDEVMVDEYQDISPLQEALLAAVST---------TTPGDRFMVGDVKQS 434

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284
            IY F  A+P+  + + +  Q   T+       I L  +FRST ++L   + +FS   +  
Sbjct: 435  IYGFRLADPQLFIHKYQTFQDAPTDPAAP-ERIILAENFRSTKNVLAFTNLIFSQIMDPE 493

Query: 285  -QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
               LS D+   +++ +   G                 + +          D       A+
Sbjct: 494  VGDLSYDNAAALKYGALDYGDAHPAVKVLLYSKATSDEDSSDASELPGDADDNEPVDIAT 553

Query: 344  ILARRIAYTISNMIG----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
               + +   I  +I             + R I  +DI +L R+     LI          
Sbjct: 554  GQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHYRDITLLTRQTSQNSLIQTQFAA---- 609

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              + +   D         +  ++AL + I +Q+ D+  V +L+SP+   S D +  I   
Sbjct: 610  AGVPLFVADTKNFFKTTELMVMLALLKVIDNQKQDIPLVAVLRSPIVGLSADQLALIRLA 669

Query: 460  RHETETV--------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
              +             E     A        H    +     +A+          I    
Sbjct: 670  AKQVPYYDAVTAFLQAEPKTPLAQRTHDMLTHFFNQLSHFRDLARENDLVTLLWAIYQDT 729

Query: 512  KGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAH 565
                       G++    L   ++     E   +  L   I  +           +    
Sbjct: 730  GFLDYVGGTPGGSQRQANLQALIDRARTYEAGGFKGLFAFIHFITLMQKQDQDLAMPAQV 789

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              +++ V++MT+H +KGLE PVVFL+      F+        I+              + 
Sbjct: 790  DPDNDAVKLMTIHKSKGLEFPVVFLMQANKH-FNMSDQTGTAILTKQGIGIKWLDPETRV 848

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            +             +  T  E  RLLYV +TRA  +L +   + + N+  S  +T     
Sbjct: 849  EYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGNQLTSADKTVEKWA 908

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH--------------------------- 718
              +      +     + + +  +WI      H                            
Sbjct: 909  AAAEGEARVLAPQVRSGATSYLDWIGPALIRHPQARGLAETTIKPALVGDETEFTIEIDV 968

Query: 719  -PENTPLEREETIKQLM-DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE----- 771
             P+ TP    E +         +                    S  + K   +       
Sbjct: 969  NPQVTPTATPEKVSDDSGTMVDLSAWFKKAYPFQAATTTTGFQSVSEIKRAFDDPDTIDL 1028

Query: 772  -----------------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--FIT 806
                                      S       G   H LLQ++         +   + 
Sbjct: 1029 VNADRFLGPKPPMRDLTAPAFLTETPSGISPAAIGTATHLLLQLVDLAKPITMASLRALR 1088

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINCP------ 858
               T    +         L ++ R  E  +    ++     + EV  S  +         
Sbjct: 1089 DQLTTTQVIAVDVAKHIDLTALIRFFETDLGRLLLAKPQQVHREVPFSMLLPADQVFEAL 1148

Query: 859  ----KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 +D++I G ID     +Q + +F+YKT H+       +   +  QL++Y + L+D 
Sbjct: 1149 ADDPGEDVLIHGIIDGYVSDEQGVTLFDYKTDHNP--NTAVLVDRYRGQLNLYAQALQDL 1206

Query: 915  YPNKSLVCLLIYVSEPKVFII 935
             P   L   L+++    V  +
Sbjct: 1207 QPKPVLHRYLVFLRTGTVVDL 1227


>gi|224476068|ref|YP_002633674.1| putative ATP-dependent nuclease subunit A [Staphylococcus carnosus
            subsp. carnosus TM300]
 gi|251764540|sp|B9DIS2|ADDA_STACT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|222420675|emb|CAL27489.1| putative ATP-dependent nuclease, subunit A [Staphylococcus carnosus
            subsp. carnosus TM300]
          Length = 1220

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 144/954 (15%), Positives = 295/954 (30%), Gaps = 132/954 (13%)

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
                +     +          EK+++          + +  K+         + + +   
Sbjct: 293  DGNLELLESAKAYYDDYKGAVEKVQQDYFSRSAEDLKADMAKLAPRVEVLSQITRDVIDT 352

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            + + K+   +LDF D       +L   D     +        + IL+DE QDT+ +Q ++
Sbjct: 353  FSKKKRSRNILDFSDYEHFALKILMNEDGTPTDLAKHYRNGFDEILVDEYQDTNRVQEQI 412

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +  +            +   LF VGD KQSIY F  A+P   + +           G   
Sbjct: 413  LSCIKR-------GDETDGNLFMVGDVKQSIYKFRQADPSLFIEKYSRFSHD----GTTG 461

Query: 256  SIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              I+L  +FRS  ++L+  + +F     E+   +  D    + + +    +   + L   
Sbjct: 462  MRIDLSQNFRSRPEVLSTTNYLFKHMMDESVGEIIYDEAAQLYYGAPFDDKPHPLNLNVM 521

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVI 371
            V                   D   + +     A  IA  +  ++    ++  G    R  
Sbjct: 522  VE------------------DKESELTGTEQEAEYIANQVEEIMNHREVYDMGTGSYRKP 563

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              KDI++L R    +       +    +  I    N +    +   ++ +++  R + + 
Sbjct: 564  SYKDIVILERGYNRSR----ELQQAFKNRDIPFHVNSKEGYFEQTEVRLVLSFLRTVDNP 619

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ------KFANCGISKFQHVI 485
              D+  V +++S ++ F+ED++ +I       +  Y+ IQ      +     ++K Q  +
Sbjct: 620  LQDIYLVGLMRSVIYQFTEDELARIRVTSPNDDYFYQSIQHYLKTKEADPDLVAKLQDFL 679

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSY 544
            K +      +     +         +   Q F    G +     L    N  +  E +S+
Sbjct: 680  KDLKFYQEFSLEHPVYQLIDRFYNNRLVIQYFSGMIGGKGRRANLYGLYNKAIEFENSSF 739

Query: 545  SSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              L + I  +++     K     N      + VR+MT+H +KGLE P V           
Sbjct: 740  RGLFQFIRFIDELIDRGKDFGEENVVGPNDDVVRMMTIHASKGLEFPFVIYSGLSKSFNR 799

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                K + +                    +     L    +K    E  RL+YV +TRA 
Sbjct: 800  SDLYKPVILNQKYGMGMTYFDVEKDFAFPSLASVTLRAITEKEMISEEMRLMYVALTRAK 859

Query: 660  DQLIICKHSNTSNEK---------------------KSNQRTWYDMVYDSFHNDERVKKI 698
            +QL +        E                      K+  +  Y ++     N       
Sbjct: 860  EQLFLVGRVKAEKELDKMLNTAISNNMLPMSYRLEVKNPLQLIYAILAKYQANHLTNDLK 919

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK---------------- 742
               N    D+ I      H  E + + ++    +  + + +                   
Sbjct: 920  FERNIDELDDAIHPYAEIHIDEYSDIAQDIHQNEDEEFRTVNDIVNYQSTNTERQQAIET 979

Query: 743  ---LFSPIKNDINEPYILNPSTI-----------------------DTKGKTNLESLLSD 776
                  P + D+ +P   + S +                        T  +         
Sbjct: 980  QLDYQYPYQKDVVKPTKQSVSELKRQLETEETGTSYERVRQYQLGASTYERPKFMRQHKK 1039

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLE 833
             +    G ++H ++Q +    E      +  Y        +       ++    +   ++
Sbjct: 1040 RKANEIGTLMHTVMQHLPFKEERMTSAELDEYIDGLIEKNIIEDDAKPDIRMDEVMNFIK 1099

Query: 834  NPMMTTA-MSCDSYSEVSVSG-------KINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
            + +      S     E+           ++N  +   II G ID I       +  +YKT
Sbjct: 1100 SDLYLEIAQSDQIMREMPFVVNQSKVDHQMNDDEDVSIIQGMIDLIYRKDNQYYFVDYKT 1159

Query: 886  H-----HHVPQEI--EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
                    V  E   E +   +  Q+  Y   L+     K +   L +     +
Sbjct: 1160 DTFNQRRGVSDEELGEQLKARYKIQMYYYRSALETIL-QKEVKGYLYFFKFGTL 1212


>gi|239631427|ref|ZP_04674458.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp.
            paracasei 8700:2]
 gi|239525892|gb|EEQ64893.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp.
            paracasei 8700:2]
          Length = 1234

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 159/1007 (15%), Positives = 300/1007 (29%), Gaps = 117/1007 (11%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
            P+ Y Q+      +   +ET  PT       L               L            
Sbjct: 245  PIWYQQIQADLAPLQTLLETNAPTYDTVRSVLISHEFAA-WSRISKGLDGAD-KDTKNAA 302

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
            K++           L      + ++   +                  +A          K
Sbjct: 303  KDLRDAAKKTWQNKLAPTFALAAEQIGDLLRE-----AQPLVATLANVALKFEDALTAEK 357

Query: 142  KKNCVLDFEDLIINTNDLLK--KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
                V D+ D+  N   +L+       A I        + +++DE QD S +Q  ++ ++
Sbjct: 358  AARHVQDYSDIAHNALRILQQKDPQTGAPIADNYRASFDEVMVDEYQDISPLQEALLAAV 417

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
            +          ++P   F VGD KQSIY F  A+P+  + + +  Q   T+       I 
Sbjct: 418  ST---------TTPGDRFMVGDVKQSIYGFRLADPQLFIHKYQTFQDAPTDPAAP-ERII 467

Query: 260  LPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            L  +FRST ++L   + +FS   +     LS D+   +++ +   G              
Sbjct: 468  LAENFRSTKNVLAFTNLIFSQIMDPEVGDLSYDNAAALKYGARDYGDAHPAVKVLLYSKA 527

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG----TDTIFSNGKKRVIQA 373
               + +          D       A+   + +   I  +I             + R I  
Sbjct: 528  TSDEDSSDASELPGDADDNEPVDIATGQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHY 587

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +DI +L R+     LI            + +   D         +  ++AL + I +Q+ 
Sbjct: 588  RDITLLTRQTSQNSLIQTQFAA----AGVPLFVADTKNFFKTTELMVMLALLKVIDNQKQ 643

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETV--------YEYIQKFANCGISKFQHVI 485
            D+  V +L+SP+   S D +  I     +             E     A        H  
Sbjct: 644  DIPLVAVLRSPIVGLSADQLALIRLAAKQVPYYDAVTAFLQAEPKTPLAQRTHDMLTHFF 703

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSY 544
              +     +A+          I               G++    L   ++     E   +
Sbjct: 704  NQLSHFRDLARENDLVTLLWAIYQDTGFLDYVGGTPGGSQRQANLQALIDRARTYEAGGF 763

Query: 545  SSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              L   I  +           +      +++ V++MT+H +KGLE PVVFL+      F+
Sbjct: 764  KGLFAFIHFITLMQKQDQDLAMPAQVDPDNDAVKLMTIHKSKGLEFPVVFLMQANKH-FN 822

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             +      I+              + +             +  T  E  RLLYV +TRA 
Sbjct: 823  MRDQTGTAILTKQGIGIKWLDPETRVEYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQ 882

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH- 718
             +L +   + + N+  S  +T       +      +     + + +  +WI      H  
Sbjct: 883  QRLYVVGATMSGNQLTSADKTVEKWAAAAEGEARVLAPQVRSGATSYLDWIGPALIRHPQ 942

Query: 719  ---------------------------PENTPLEREETIKQLM-DEQKIPKKLFSPIKND 750
                                       P+ TP    E +         +           
Sbjct: 943  ARGLAETTIKPALVGDETEFTIEIDVNPQVTPTATPEKVSDDSGTMVDLSAWFKKAYPFQ 1002

Query: 751  INEPYILNPSTIDTKGK---------------TNLESLLSDNQT-------------FNR 782
                     S  + K                    +  + D                   
Sbjct: 1003 AATTTTGFQSVSEIKRAFDDSDTIDLVNADRFLGPKPPMRDLTAPAFLTETPSGISPAAI 1062

Query: 783  GLIIHKLLQVIFTLPEHKRKN--FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
            G   H LLQ++         +   +         +         L ++ R  E  +    
Sbjct: 1063 GTATHLLLQLVDLAKPITMASLMALRDQLATTQVIAVDVAKHIDLTALIRFFETDLGRLL 1122

Query: 841  MSC--DSYSEVSVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHH 888
            ++     + EV  S  +              +D++I G ID     +Q + +F+YKT H+
Sbjct: 1123 LAKPQQVHREVPFSMLLPADQVFEALADDPGEDVLIHGIIDGYVSDEQGVTLFDYKTDHN 1182

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                   +   +  QL++Y + L+D  P   L   L+++    V  +
Sbjct: 1183 P--NTAVLVDRYRGQLNLYAQALQDLQPKPVLHRYLVFLRTGTVVDL 1227


>gi|313904430|ref|ZP_07837807.1| recombination helicase AddA [Eubacterium cellulosolvens 6]
 gi|313470766|gb|EFR66091.1| recombination helicase AddA [Eubacterium cellulosolvens 6]
          Length = 1236

 Score =  360 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 160/1009 (15%), Positives = 320/1009 (31%), Gaps = 142/1009 (14%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT-QEINKKSPDLKEKLKKS 103
              ++  + L +A+  Q   + F+ L    L +    Q       +I     D+K+++K+ 
Sbjct: 252  ADIEMLEALGEATDYQACADAFASLKFGTLRRAKDIQAEDSRWVKITTVRDDVKKQVKEL 311

Query: 104  Q-----DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            Q     +    I   F   +        + L       +   K+K  + DF DL     +
Sbjct: 312  QKNTFGNNIGAIVREFEILR--PYVQELVRLVLRFREAFSAEKRKKNIADFNDLEHFALE 369

Query: 159  LLKKRDV------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
            +L  +D             ++ +    ++IDE QD++ +Q  ++++++ D          
Sbjct: 370  ILLDKDEDGRRTLRTDAAKELAESFREVMIDEYQDSNFLQERILKAVSGD-------EDG 422

Query: 213  PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
                F VGD KQSIY+F  A P+              +       I+L  +FRS  ++L 
Sbjct: 423  RFNRFMVGDMKQSIYAFRMARPEL---FLEKFNTYFPDPESTQVRIDLTRNFRSRKEVLD 479

Query: 273  VVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
              + +F         G+  D    + +++S               S   ++         
Sbjct: 480  SSNALFRRLMIPEVGGIRYDDKAFLNYKASYPE--------PADPSFPQTELLVINREEE 531

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDILVLVRKRKDTPLI 389
             +      E    + A  +A  I  ++    +   G + R ++ +DI+VL+R        
Sbjct: 532  PFSSYKSSEERMELEAAAVAAKIRRLMAGTLVRGEGDELRPLRYRDIVVLLRS---AKRW 588

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
              +   +  +  I           D + I  ++   R I +   D+    +L+SP+    
Sbjct: 589  GKVWVKILQEAGIPCYALSGEGFFDTIEIATVLNYLRLIDNPRQDIPLAAVLRSPIAGLD 648

Query: 450  EDDIFKICT----QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
            ++D+  I      +  +   +Y+ +   A     K +  ++ + +    A     H+   
Sbjct: 649  DEDLAWIRAKGGMEEGKVPLLYDAVLALA-EQDEKLRKFVEQLDDFRARAPRTEVHELIR 707

Query: 506  LILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPP 559
             +L      +   +   G +    L   +   +  E+ SY  L   I  ++         
Sbjct: 708  KVLEKTGYGEWAAAMPAGEQREANLKMLIEKAVDYEKTSYHGLFNFIRYIDRLKKYSVDY 767

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                 +S   + VRIMT+H +KGL+ PVVF+   GS+       K +    SL     + 
Sbjct: 768  GEVNLNSEADDTVRIMTIHQSKGLQFPVVFVSALGSEFNKADTTKAVLRHASLGLGLKVS 827

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                + +  +     +  H+KK    E  R+LYV +TRA ++LI+    + S +  +   
Sbjct: 828  DPEKRVQYPSVYRRVMQSHMKKQMYGEELRVLYVALTRAEEKLILTGQVSDSEKLTAAVA 887

Query: 680  TWYDMVYDSFHNDERVKKIKLTNS------------------------------INKDEW 709
               +         +   +  L +                               +   E 
Sbjct: 888  MQNNFRMKRESGQDETVERMLASPMDFTALLSAKTFLEMILAVIPEEKDMKLHVVEAGEL 947

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPK-----------KLFSPIKNDINEPYILN 758
             A E S     +  LE    + +L +E+KI                 P +     P  L 
Sbjct: 948  AAGEVSEKMQRSAVLEEISGLAKLPEEKKIFDPEVNRMMKEVRAFSYPYEEQAKMPAKLT 1007

Query: 759  -------------------------PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                                     P   +   K    +   +    +RG + H  L+ +
Sbjct: 1008 VTEIKKRAQRTELQEDELPAAAVFEPEEEELIPKFLRGTDEEEKTGASRGTVYHHFLECL 1067

Query: 794  ------FTLPEHKR---KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
                      E +R            +   +    +         R L   +     +  
Sbjct: 1068 DYGKLRPGATEEERTAFVEAERKRMLEKGLMTREDDACMYTPDFVRFLACGLGQRMKAAS 1127

Query: 845  S----YSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
                 + E      I            ++I++ G ID     +    + +YKT      +
Sbjct: 1128 DAGTLHREQPFVMDIPAKDIDSQWPEGENILVQGTIDAYFSEEGKYVLVDYKTDRIHSLD 1187

Query: 893  IE------HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             E       +   +  QL  Y   L      +     +  V   +   +
Sbjct: 1188 AEGNPDERELVEKYHKQLEYYAAALTRITGTEVGEMYIYSVRLGREIKL 1236


>gi|270292732|ref|ZP_06198943.1| exonuclease RexA [Streptococcus sp. M143]
 gi|270278711|gb|EFA24557.1| exonuclease RexA [Streptococcus sp. M143]
          Length = 1217

 Score =  360 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 161/1030 (15%), Positives = 333/1030 (32%), Gaps = 140/1030 (13%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQC 61
              F     +  E I + LW L  F    ++              + +    +   +Q   
Sbjct: 229  ADFANEKEKLTEQIKQALWDLESFFRYHLDNDAKEFPKVAYLEAVQQVLDEISSLNQESD 288

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTY 117
             +   ++L+      K    + +           L +     +     +  ++ D+    
Sbjct: 289  SQAYQAVLARVVAISKEKNGRALANSSRKADLKPLADAYNDKRKAQFAKLGQLADQITVL 348

Query: 118  KMFK-STLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
               +     +  LAK            Y E K++    +F D+   T ++L+       +
Sbjct: 349  DYQEHYHEDTWNLAKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILENFP---QV 405

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                 +  + +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F
Sbjct: 406  CEAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRF 454

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
              A+P+    + +   +      Q+  +I L  +FRS++++L+  + VF+   + +    
Sbjct: 455  RQADPQIFNEKFQRYAQ----NPQEGKLILLKENFRSSSEVLSATNDVFARLMDQEVGEI 510

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            +  +  +   +                         +       +   +++  +   R +
Sbjct: 511  NYDSMHQLVFANTK-------LTPNPCNKTEFLLYDKGDSGQEKEESDEDTKLTGEMRLV 563

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
               I  +            + +  K+I +L   R              ++Y I V  +  
Sbjct: 564  IKEILKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGE 610

Query: 410  FILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                   L ++ ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +    
Sbjct: 611  QNNYLQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVQEN 670

Query: 469  YIQKFANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
              +K  N                  K    +  +      A+  S +D    I   +   
Sbjct: 671  LYEKLVNAQKQDTVEKDLIHTELAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFYY 730

Query: 515  QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANH 569
                +   G      L        + E++++  L   I  ++Q           A +   
Sbjct: 731  DYVGALPNGLARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPK 790

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PG 617
            + V +MT+H +KGLE P VF+++          +  + +                     
Sbjct: 791  DAVELMTIHKSKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVEA 850

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK--- 674
                  +    +   +   K L+ ++  E  RLLYV MTRA  +L +    +    +   
Sbjct: 851  HYPKTIKLSIPSLTYTQNEKELQLASYSEQMRLLYVAMTRAERKLYLVGKGSREKLEAKE 910

Query: 675  ----------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                              N + W   +   F  D      +             E     
Sbjct: 911  YPAANNGKLDSNTRLQARNFQDWIWAISKVFTKDNLNFSYRFVGEDQLTREAIGELENKS 970

Query: 719  P----ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT------ 768
            P          + ETIK+ ++  K  +   +  +  I  P +  PS I    +       
Sbjct: 971  PLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEG 1030

Query: 769  ------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                                 S          G   H+L+Q I  L +      +T    
Sbjct: 1031 VEIAGQSQSPEKKISFDLPDFSTKEKVTGAEIGSGTHELMQRI-DLSQQPTLASLTEILK 1089

Query: 811  KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIIS 865
            +          + + L  I    + P+    ++     Y E   S   K    ++D ++ 
Sbjct: 1090 Q--VQTSPAVREKINLSKILAFFDTPLGQEILANTDHLYREQPFSMLKKDQKSQEDFVVR 1147

Query: 866  GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            G +D   + +  I +F+YKT  +   E   +   +  QL++Y + L  +Y  +++   LI
Sbjct: 1148 GILDGYLLYENRIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYLI 1205

Query: 926  YVSEPKVFII 935
             + + +V ++
Sbjct: 1206 LLGKDEVQVV 1215


>gi|227892521|ref|ZP_04010326.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus ultunensis
            DSM 16047]
 gi|227865642|gb|EEJ73063.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus ultunensis
            DSM 16047]
          Length = 1207

 Score =  360 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 154/1021 (15%), Positives = 317/1021 (31%), Gaps = 134/1021 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTI------LKKAQTLQQASQTQCIEERFSLL 69
            +      L     + +   +  + E                  +      +  + +  LL
Sbjct: 217  LLDSFGDLQGKINNHLEATIFETKELKKCRDDFTLFEQNLDNFITALENDEDYDHQRKLL 276

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI---------RDRFNTYKMF 120
             +     ++   KN   ++I     ++++   +++D+             +++    +  
Sbjct: 277  RACTFNGRYRKSKNW-DEDILDFYNEMQKIKDEAKDQIFDTFTSFFATNEKEQLEIMQDG 335

Query: 121  KSTLASLTLAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR-DVSAWIRYKIDQEIN 178
            +  +++++ A+  L   + + K+    LD+ D+      +L +    S   R     +  
Sbjct: 336  EKIVSAISQAEIALIQRFNKLKRDENWLDYSDMEQLAYQILSQDTSSSKMAREFYQNKFK 395

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             IL+DE QD + +Q ++I+ +          +    TLF VGD KQSIY F  AEP   L
Sbjct: 396  EILVDEYQDINALQEKIIQQV---------KNPEKNTLFMVGDVKQSIYGFRQAEPSLFL 446

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            ++         +       I L  +FRST  +   V+ +F+   ++     +     +  
Sbjct: 447  KKYHDFASDQDDHE---ERILLSDNFRSTQPVAETVNTLFNSILSSNFGGINYQHEGQLI 503

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                     +    +V+     + N ++                    + +   I  +  
Sbjct: 504  FGAKYYPENLPKASEVIVHKKEKNNEEE----------SNSDVDFSEIQMVLARIKQLKK 553

Query: 359  TD---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                       + R ++  DI +L R   D                + +   D       
Sbjct: 554  EHVQIYDSDKKEVRELKYSDIAILTRSHSDNLN----IMQEFAKENVPLFVTDAENYFQT 609

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--YIQKF 473
              +  +M   + I + + D+  V +L+SPLFNF E ++  I  +   +            
Sbjct: 610  FELTVMMNYLKIIDNPDQDIPLVTVLRSPLFNFGEKELAMIRIKSKNSSFYSALTSYVGV 669

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEF 532
             +    K +  +  + +L   A      +    I       +   +   G +    L+  
Sbjct: 670  GDTLSKKCKDFLNQLADLREFATTHRISELIWSIYARTNLIEIMTALPNGEQRRVNLEAL 729

Query: 533  LNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
                   E   +  L + I+ +      Q             N VR+MT+H +KGLE P+
Sbjct: 730  YERASSYESAGFKGLYQFINFINRMRQSQKDLAQPLLSKEAGNAVRLMTIHGSKGLEFPI 789

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            VF +    Q           I P      GI +     +  + + +      K+   EE 
Sbjct: 790  VFYLGMHHQYQLRDLKGNYVINPDSV---GITLREKHYRVDSLVKAMGNVTKKRQLLEEE 846

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---VYDSFHNDERVKKIKLTNSI 704
             R+LYV +TRA  +LI+     + ++K  +     D    +  +           +  ++
Sbjct: 847  ARVLYVALTRAKQKLILVGDIPSFDKKVKDWSNELDHKGQLPLADKLSATTPLSFMGPAL 906

Query: 705  NKDEWIAYEWST---------------------------HHPENTPLEREETIKQLMDEQ 737
              D  +A + +                            +  ++     +     L    
Sbjct: 907  AFDRHVAIKMNDITNSVDQSQSLLFVDYSDEEIQKMNNSNENQSEDEIDDNLRSLLTKTT 966

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-------------------- 777
            +   +   P K+          S I       +++ L ++                    
Sbjct: 967  RNMYQFNYPFKDASETTAYQAVSEIKKVFNDPIDTDLENSHVLTSTNRYLQPIDTKPNFL 1026

Query: 778  -----QTFNRGLIIHKLLQVI---FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                      G   H +LQ           +    I     +  K        +L     
Sbjct: 1027 YQTKFTGAEIGTATHLILQYYNYAGDGSTDQLDQEIAELIDQ--KKLNPDIVSSLKKDQI 1084

Query: 830  RLLENPMMT---TAMSCDSYSEVSVS---------GKINCPKKDIIISGRIDQISISQQN 877
                +   +        +   EV  S            + P   I++ G ID   ++   
Sbjct: 1085 EWFVHSDFSKDFWKFPENLKREVDFSSLLSAKTLFENFSDPNAKILVHGTIDGYFVTNNG 1144

Query: 878  IFIFEYKTHHHV----PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
            I +F+YKT H       + IE I   +  QL +YE+ L +    K +   LI +   +  
Sbjct: 1145 IILFDYKTDHVNKSHLDKSIELIKEKYTGQLRLYERALNEFSQKKVIGKYLILLDAKRAV 1204

Query: 934  I 934
             
Sbjct: 1205 E 1205


>gi|257881059|ref|ZP_05660712.1| UvrD/REP helicase [Enterococcus faecium 1,231,502]
 gi|257889644|ref|ZP_05669297.1| UvrD/REP helicase [Enterococcus faecium 1,231,410]
 gi|260559204|ref|ZP_05831390.1| UvrD/REP helicase [Enterococcus faecium C68]
 gi|293563136|ref|ZP_06677601.1| recombination helicase AddA [Enterococcus faecium E1162]
 gi|294623302|ref|ZP_06702164.1| recombination helicase AddA [Enterococcus faecium U0317]
 gi|314939883|ref|ZP_07847089.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04]
 gi|314943730|ref|ZP_07850469.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C]
 gi|314949686|ref|ZP_07853004.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082]
 gi|314953232|ref|ZP_07856171.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A]
 gi|314993688|ref|ZP_07859036.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B]
 gi|314997395|ref|ZP_07862346.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01]
 gi|257816717|gb|EEV44045.1| UvrD/REP helicase [Enterococcus faecium 1,231,502]
 gi|257826004|gb|EEV52630.1| UvrD/REP helicase [Enterococcus faecium 1,231,410]
 gi|260074961|gb|EEW63277.1| UvrD/REP helicase [Enterococcus faecium C68]
 gi|291597270|gb|EFF28459.1| recombination helicase AddA [Enterococcus faecium U0317]
 gi|291604914|gb|EFF34383.1| recombination helicase AddA [Enterococcus faecium E1162]
 gi|313588530|gb|EFR67375.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01]
 gi|313591862|gb|EFR70707.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B]
 gi|313594698|gb|EFR73543.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A]
 gi|313597593|gb|EFR76438.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C]
 gi|313640846|gb|EFS05426.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04]
 gi|313643944|gb|EFS08524.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082]
          Length = 1240

 Score =  360 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 160/1001 (15%), Positives = 326/1001 (32%), Gaps = 130/1001 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97
                ++ + + +A     +EE ++ L     +   + +K  +       + +  K+  L 
Sbjct: 259  AGEQQQIKNIYEAFSQDRLEEAYAGLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +++ KS       +    T K          + +     +   K++  VLDF DL     
Sbjct: 319  QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378

Query: 158  DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +L ++    W+         ++   +++DE QD + +Q  ++  L E          + 
Sbjct: 379  QILTEKTKDVWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIYSF  A+P   + +     K+     +    I L  +FRS  ++L+ 
Sbjct: 432  GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +     +            Q   +++     Q   + E  T   
Sbjct: 487  TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390
                 E    +        I  +I +  +  + K    R I+ KDI++L   +K+   I 
Sbjct: 547  LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + + L     I +  ND         I+ +++L + I +   D+    +L+SP+    E
Sbjct: 603  EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 658

Query: 451  DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             ++  I          + V  Y     +   +K +H  K +     +A+  S  D    I
Sbjct: 659  PELASIRLANRAHTYYDAVLAYQASNEDELAAKLEHFGKQLEHWRELARRSSITDLLWDI 718

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +  +    G +    L   ++     EQ+S+  L + +  +E+     K    
Sbjct: 719  YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778

Query: 567  A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N VR+MT+H +KGLE PVVFL+D   +        +      L          
Sbjct: 779  PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673
             +          +    +     E  R LYVG+TRA  +L I        +         
Sbjct: 839  TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898

Query: 674  -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704
                       +   + +  + +         ++K                       + 
Sbjct: 899  DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 958

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                      +     N   + +E    L D  +       P +         + S I  
Sbjct: 959  QSIIEQRQLLAEKELVNLDQQMKEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018

Query: 765  KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791
              +   ++  S                                        G   H LLQ
Sbjct: 1019 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078

Query: 792  VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848
            ++   +P  +  +       +   +      K  + SI    +  +    ++   +   E
Sbjct: 1079 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138

Query: 849  VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895
               S  +            + +++I G +D     + ++ I+++KT        P EI+ 
Sbjct: 1139 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDA 1198

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
            I   +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 1199 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 1238


>gi|227535023|ref|ZP_03965072.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei
            subsp. paracasei ATCC 25302]
 gi|301066540|ref|YP_003788563.1| ATP-dependent exoDNAse [Lactobacillus casei str. Zhang]
 gi|227187338|gb|EEI67405.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei
            subsp. paracasei ATCC 25302]
 gi|300438947|gb|ADK18713.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
            casei str. Zhang]
          Length = 1234

 Score =  360 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 162/1041 (15%), Positives = 315/1041 (30%), Gaps = 131/1041 (12%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI------LKKAQTLQQASQTQC 61
            +  +      + +WP    Q+  I   ++ +    N           +A      +  + 
Sbjct: 205  APEKWEATFSQQIWPRVKGQLLQIATSLTQASALANQLPNPIWYQQIQADLAPLQTLLET 264

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE--------------F 107
                +  + S  ++ +F     I ++ ++    D K   K  +D                
Sbjct: 265  NAPTYDTVRSVLISHEFAAWSRI-SKGLDDADKDTKNAAKDLRDAAKKTWQNKLAPTFAL 323

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDV 165
               +      +          +A          K    V D+ D+  N   +L+      
Sbjct: 324  AAEQIGDLLREAQPLVATLANVALKFEDALTAEKAARHVQDYSDIAHNALRILQQKDPQT 383

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             A I        + +++DE QD S +Q  ++ +++          ++P   F VGD KQS
Sbjct: 384  GAPIADNYRASFDEVMVDEYQDISPLQEALLAAVST---------TTPGDRFMVGDVKQS 434

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284
            IY F  A+P+  + + +  Q   T+       I L  +FRST ++L   + +FS   +  
Sbjct: 435  IYGFRLADPQLFIHKYQTFQDAPTDPAAP-ERIILAENFRSTKNVLAFTNLIFSQIMDPE 493

Query: 285  -QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
               LS D+   +++ +   G                 + +          D       A+
Sbjct: 494  VGDLSYDNAAALKYGALDYGDAHPAVKVLLYSKATSDEDSSDASELPGDADDNEPVDIAT 553

Query: 344  ILARRIAYTISNMIG----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
               + +   I  +I             + R I  +DI +L R+     LI          
Sbjct: 554  GQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHYRDITLLTRQTSQNSLIQTQFAA---- 609

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              + +   D         +  ++AL + I +Q+ D+  V +L+SP+   S D +  I   
Sbjct: 610  AGVPLFVADTKNFFKTTELMVMLALLKVIDNQKQDIPLVAVLRSPIVGLSADQLALIRLA 669

Query: 460  RHETETV--------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
              +             E     A        H    +     +A+          I    
Sbjct: 670  AKQVPYYDAVTAFLQAEPKTPLAQRTHDMLTHFFNQLSHFRDLARENDLVTLLWAIYQDT 729

Query: 512  KGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAH 565
                       G++    L   ++     E   +  L   I  +           +    
Sbjct: 730  GFLDYVGGTPGGSQRQANLQALIDRARTYEAGGFKGLFAFIHFITLMQKQDQDLAMPAQV 789

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              +++ V++MT+H +KGLE PVVFL+      F+ +      I+              + 
Sbjct: 790  DPDNDAVKLMTIHKSKGLEFPVVFLMQANKH-FNMRDQTGTAILTKQGIGIKWLDPETRV 848

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            +             +  T  E  RLLYV +TRA  +L +   + + N+  S  +T     
Sbjct: 849  EYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGNQLTSADKTVEKWA 908

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH--------------------------- 718
              +      +     + + +  +WI      H                            
Sbjct: 909  AAAEGEARVLAPQVRSGATSYLDWIGPALIRHPQARGLAETTIKPALVGDETEFTIEIDV 968

Query: 719  -PENTPLEREETIKQLM-DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE----- 771
             P+ TP    E +         +                    S  + K   +       
Sbjct: 969  NPQVTPTATPEKVSDDSGTMVDLSAWFKKAYPFQAATTTTGFQSVSEIKRAFDDPDTIDL 1028

Query: 772  -----------------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--FIT 806
                                      S       G   H LLQ++         +   + 
Sbjct: 1029 VNADRFLGPKPPMRDLTAPAFLTETPSGISPAAIGTATHLLLQLVDLAKPITMASLRALR 1088

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINCP------ 858
               T    +         L ++ R  E  +    ++     + EV  S  +         
Sbjct: 1089 DQLTTTQVIAVDVAKHIDLTALIRFFETDLGRLLLAKPQQVHREVPFSMLLPADQVFEAL 1148

Query: 859  ----KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 +D++I G ID     +Q + +F+YKT H+       +   +  QL++Y + L+D 
Sbjct: 1149 ADDPGEDVLIHGIIDGYVSDEQGVTLFDYKTDHNP--NTAVLVDRYRGQLNLYAQALQDL 1206

Query: 915  YPNKSLVCLLIYVSEPKVFII 935
             P   L   L+++    V  +
Sbjct: 1207 QPKPVLHRYLVFLRTGTVVDL 1227


>gi|325570415|ref|ZP_08146192.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus casseliflavus
            ATCC 12755]
 gi|325156625|gb|EGC68802.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus casseliflavus
            ATCC 12755]
          Length = 1225

 Score =  360 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 149/1026 (14%), Positives = 315/1026 (30%), Gaps = 138/1026 (13%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ++   + +          +     + +  E G        +TL+       ++  +  + 
Sbjct: 233  KTAAHLLQAAQDYARSDEAMEKAALLIDTELG------MVETLKALLDADDVDGFYEQIQ 286

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD------RFNTYKMFKSTL 124
                 +    +K    +E++++   L++  KK  ++                ++      
Sbjct: 287  VLRFARYPAFRK-PEQKELSQEIKPLRDDAKKLVEQLKAAFPYPPAEMMELLHRSAPVVE 345

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                + +     ++E K     LDF DL   T  +L+     +            +L+DE
Sbjct: 346  KMAAMTEAFMKAFQERKLSKGRLDFNDLEHFTLQILQGDGSGSEASTYYRNRFEEVLVDE 405

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QD + +Q  ++  + +          +P  +F VGD KQSIYSF  A+P   + +    
Sbjct: 406  YQDVNRLQEAILYWVRQ-------VDHNPGNMFMVGDVKQSIYSFRLADPTLFIEKYLAF 458

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +            I L  +FRS +D+L   + VF    + +             +     
Sbjct: 459  ET-----ENGGRRIVLAENFRSRSDVLDFTNLVFQQLMDERVGQIPYDEAAALITGFPHF 513

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              +     +++       + +Q            +       +  A  I  +I +  +  
Sbjct: 514  PESDAFATELLLYEKEHESEEQLI----------DDKTEGEMQITALKIRELIESKFMIY 563

Query: 365  NGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            + K    R I   DI++L   RK+  +I  + +     + I +  ND         I+ +
Sbjct: 564  DKKAKANRPITYNDIVLLTPTRKNNLVILDVFK----QFGIPMAVNDAQNYFQATEIQTV 619

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            ++L + I +   D+  V +L+SP+   +ED + +I      ++     +        S  
Sbjct: 620  VSLLQIIDNPYQDIPLVAVLRSPIVGLTEDQLAEIRLANRSSDYYDAVLDYHVQQEESPL 679

Query: 482  QH----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFT 536
                   +  +++    A+          I          +    G +    L   ++  
Sbjct: 680  WQTVDGFLAKLNQWREEARRLPIPTLLWQIYEDTAYLDYVVGLPAGQQRYANLVALIHRA 739

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVD 592
             + E++S+  L + I  +E+     K           + VR+MTVH +KGLE PVVFL+D
Sbjct: 740  EKYEKSSFRGLYQFIRFIEKMQEKNKDLAEPVATPVEDAVRVMTVHASKGLEFPVVFLLD 799

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T          K+      L             K        + +   K    E  R LY
Sbjct: 800  TTKFFNYQDFQKRYIFEEQLGAGIQYVNPAENLKFETLPFQAIKQVRLKKALSEEMRKLY 859

Query: 653  VGMTRASDQLIICKHSNTSNE--------------------KKSNQRTWYDMVYDSFHND 692
            V +TRA  +L +        +                    +   + +  D V  +    
Sbjct: 860  VALTRAEQKLFLVGSYKNQADAFKTWQSGLTQAEMVLDPALRLVARGSLMDWVGRTLMRH 919

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK----------- 741
              ++ +    S  K              N     ++  + L   ++  +           
Sbjct: 920  PDMEAVFSEASERKRTIDHPAHFRLSWWNQETITQQVQETLAPVEESKRLLAPDSNIDDL 979

Query: 742  ----KLFSPIKNDINEPYILNPSTI--------------------------------DTK 765
                    P +         + S +                                  +
Sbjct: 980  LKRLAYRYPYQKATQTTSYQSVSELKRLYNDPDDQQTTLLEWRSVSEKTNPQQYRYVQDE 1039

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                     +     + G   H +LQ+I       +            K + ++E    +
Sbjct: 1040 LAKPKFLQETKPLASSIGTATHTVLQMIPLGMTPTQDTLALLIAELVKKQFFSEEIAKKI 1099

Query: 826  LS--ITRLLENPMMTTAMSCDS---YSEVSVSG---------KINCPKKDIIISGRIDQI 871
                I    +   +   ++  S     E   S            + P   ++I G ID  
Sbjct: 1100 DRSSILWFYQTE-LGELLNRSSDVVKREQPFSMLKEADTIFEGFDEPDAPLLIHGIIDGY 1158

Query: 872  SISQQNIFIFEYKTHHHVPQEIE---HIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYV 927
                  I ++++KT      + +    +   +  QL +Y + L+ +  NK +    L+ +
Sbjct: 1159 IELADEIILYDFKTDDVFGSQAQIEKKMRERYYGQLKLYCQALEKAL-NKPVKQTYLVLL 1217

Query: 928  SEPKVF 933
                + 
Sbjct: 1218 KPKMIV 1223


>gi|315150316|gb|EFT94332.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0012]
          Length = 1264

 Score =  360 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 159/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEATDYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G  IH LLQ+I   T P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTAIHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    E  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFETALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|261207737|ref|ZP_05922422.1| UvrD/REP helicase [Enterococcus faecium TC 6]
 gi|294614014|ref|ZP_06693944.1| recombination helicase AddA [Enterococcus faecium E1636]
 gi|260078120|gb|EEW65826.1| UvrD/REP helicase [Enterococcus faecium TC 6]
 gi|291593121|gb|EFF24700.1| recombination helicase AddA [Enterococcus faecium E1636]
          Length = 1240

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 162/1032 (15%), Positives = 332/1032 (32%), Gaps = 133/1032 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT---ILKKAQTLQQASQTQCIEERFSLLSSF 72
            +  D++                 +E  N       ++ + + +A     +EE ++ L   
Sbjct: 228  VLADIYQCVQLYEQMTQLAQGEGLEKMNEQVAGEQQQIKNIYEAFSQDRLEEAYAGLEQL 287

Query: 73   FLTQKFTPQKNIIT------QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
              +   + +K  +       + +  K+  L +++ KS       +    T K        
Sbjct: 288  TFSTFKSSRKAELKEISNEVKGMRDKAKKLIQQISKSYFPVSPSQMEELTDKALPLVEEM 347

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILI 182
              + +     +   K++  VLDF DL      +L ++   AW+         ++   +++
Sbjct: 348  TKVTQSFMDGFSMRKREKGVLDFNDLEHLALQILTEKTKDAWLPSEASKHYRKKFKEVMV 407

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD + +Q  ++  L E          +   +F VGD KQSIYSF  A+P   + +  
Sbjct: 408  DEYQDVNQLQEAILYWLRE-------PDDTKGNMFMVGDVKQSIYSFRLADPSLFIGKYE 460

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
               K+     +    I L  +FRS  ++L+  + +F    +      +     +      
Sbjct: 461  NFSKK-----EGGRRIVLAENFRSRKEVLSFTNLIFEQLMDPAVGQINYDEAAKLIQGFS 515

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  Q   +++     Q   + E  T        E    +        I  +I +  +
Sbjct: 516  DFPENEQFEPEIMIYEKEQEESEIEIPTDDILEDKTEGELFMT----GLKIRQLIDSSFM 571

Query: 363  FSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              + K    R I+ KDI++L   +K+   I  + + L     I +  ND         I+
Sbjct: 572  IYDKKSKKSRPIEYKDIVLLTPTKKNNLTILEIFKTL----DIPLEMNDAQNYFQATEIR 627

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYIQKFANC 476
             +++L + I +   D+    +L+SP+    E ++  I          + V  Y     + 
Sbjct: 628  TMISLLQLIDNPYQDIPLAAVLRSPIVGLIEPELASIRLADRAHTYYDAVLAYQASNEDE 687

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNF 535
              +K +H  K +     +A+  S  D    I       +  +    G +    L   ++ 
Sbjct: 688  LAAKLEHFGKQLEHWRELARRSSITDLLWDIYYKTGYLEYVVGLPAGAQRQANLYALVDR 747

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLV 591
                EQ+S+  L + +  +E+     K           N VR+MT+H +KGLE PVVFL+
Sbjct: 748  AKAYEQSSFRGLYQFVRFIEKMQEKDKDLAEPVISIEDNAVRVMTIHASKGLEFPVVFLL 807

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            D   +        +      L           +          +    +     E  R L
Sbjct: 808  DMTKEFNLQDLRNRYAFEEKLGAGIRYMDPETRVLYDTLPFQAIKLAKQNKLLSEEMRKL 867

Query: 652  YVGMTRASDQLIICKHSNTSNE--------------------KKSNQRTWYDMVYDSFHN 691
            YVG+TRA  +L I        +                    +   + +  + +      
Sbjct: 868  YVGLTRAEQKLFIVGSYKNKEQMIQTWSEAADHEELVFDPALRLKGRSSLMNWIGYGLIR 927

Query: 692  DERVKKIKLTN------------------SINKDEWIAYEWSTHHPENTPLEREETIKQL 733
               ++K                       +           +     N   + +E    L
Sbjct: 928  HPEMQKYLEEEISTSLLQHSNAQFSISWMNQQSIIEQRQLLAEKELVNLDQQMKEDETLL 987

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ--------------- 778
             D  +       P +         + S I    +   ++  S                  
Sbjct: 988  ADSLQKRLAYEYPYQASSQTTSYQSVSEIKRLFEDPDDTQESRLTLESSQNKAASRQFRY 1047

Query: 779  ------------------TFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKLWPAK 819
                                  G   H LLQ++   +P  +  +       +   +    
Sbjct: 1048 TQEQLAEPKFLQKDRQVSAATVGTATHALLQLLPLEMPTTESIHQKLQELVRKRLVDEKV 1107

Query: 820  EYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP---------KKDIIISGRI 868
              K  + SI    +  +    ++   +   E   S  +            + +++I G +
Sbjct: 1108 AKKVDVSSIIWFFQTELGQQLIANKENVKREQPFSMLLPADEVFQDYLNQEDELLIHGIV 1167

Query: 869  DQISISQQNIFIFEYKTHHH-VPQEIEH---IPYTHIAQLSIYEKILKDSYPNKSLV-CL 923
            D     + ++ I+++KT     P +      I   +  QL +Y++ + ++  NK +    
Sbjct: 1168 DGYLEEKDHLNIYDFKTDFILPPDDPAEIDTIVQKYQGQLRLYQQAMSEAL-NKPVENVF 1226

Query: 924  LIYVSEPKVFII 935
            LI +   ++  I
Sbjct: 1227 LILLRVKQIINI 1238


>gi|331266377|ref|YP_004326007.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit (contains
            helicase and exonuclease domains) [Streptococcus oralis
            Uo5]
 gi|326683049|emb|CBZ00666.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit (contains
            helicase and exonuclease domains) [Streptococcus oralis
            Uo5]
          Length = 1217

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 157/1025 (15%), Positives = 335/1025 (32%), Gaps = 138/1025 (13%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQCIEER 65
            +  ++  E I + LW L  F    ++   +          +      +   +Q    +  
Sbjct: 233  IEKDKLTEQIKQALWDLESFFRYHLDNDANEFPKAAYLENVQLVLDEIGSLNQESDSQAY 292

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFK 121
             ++L+      K    +++           L +     +     +  ++ D+       +
Sbjct: 293  QAVLARIIAISKEKNGRSLANSSRKADLKPLADAYNDERKAQFAKLGQLADQITILDYQE 352

Query: 122  S-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                 +  LAK            Y E K++    +F D+   T ++L+       +R   
Sbjct: 353  RYHEDTWELAKTFQTFMSDFVEAYRECKRQENAFEFADISHFTIEILENFP---QVREAY 409

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             +  + +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 410  QERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQAD 458

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+    + +   +      ++  +I L  +FRS++++L+  + +F+   + +    +  +
Sbjct: 459  PQIFNEKFQRYAQ----NPKEGKLILLKENFRSSSEVLSATNDIFARLMDQEAGEINYDS 514

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +   +            + +         ++E   +      +        R +   I
Sbjct: 515  MHQLVFANTKLTPNPDNKAEFLLYDKGDSGQEEEESQTETKLTGEM-------RLVIKEI 567

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
              +            + +  K+I +L   R              ++Y I V  +      
Sbjct: 568  LKLHQE---------KGVTFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNY 614

Query: 414  -DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
               L ++ ++   R I +   D + V ++KSP+F+F ED++ ++  Q+ E +      +K
Sbjct: 615  LQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFSFDEDELARLSLQKVEDKVQENLYEK 674

Query: 473  FANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
              N                  K    +  +       +  S +D    I   +       
Sbjct: 675  LVNAQKLVTNQKELIHTALAEKLNQFMDILDSWRLYTKTHSLYDLIWKIYIDRFYYDYVG 734

Query: 519  S-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVR 573
            +   G      L        + E++++  L   I  ++Q           A +   + V 
Sbjct: 735  ALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVE 794

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIW 621
            +MT+H +KGLE P VF+++          + ++ +                         
Sbjct: 795  LMTIHKSKGLEFPYVFILNMDQDFNKQDSMSEVILSRKNGLGVKYIAKVETGAVEAHYPK 854

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK------- 674
              +    +   +   + L+ ++  E  RLLYV MTRA  +L +    +    +       
Sbjct: 855  TIKLSIPSLTYTQNEEELQLASYSEQMRLLYVAMTRAERKLYLVGKCSREKLEAKEYPTA 914

Query: 675  ------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW----STHH 718
                          N + W   +   F  D      +             +     S   
Sbjct: 915  ENGKLDKHTRLQAKNFQDWIWAISKVFARDNLNFSYRFVGEDQLTREAIGQLENKSSLQD 974

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------- 768
                   + ETIK+ ++  K  +   +  +  I  P +  PS I    +           
Sbjct: 975  RSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIA 1034

Query: 769  --------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                             S          G   H+L+Q I    +        +   K  +
Sbjct: 1035 GQSQSVDKKISFDLPDFSTKERVTGAVIGSATHELMQRIDLSQQPTLATLTETL--KQVQ 1092

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGK--INCPKKDIIISGRIDQ 870
              PA   K  L  +    + P+    ++     Y E   S        + D ++ G +D 
Sbjct: 1093 TSPAVRKKINLSKVLAFFDTPLGQEILANTDYLYREQPFSMLKWDQKSQGDFVVRGILDG 1152

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
              +    I +F+YKT  +   E   +   +  QL++Y + L  +Y  +++   LI + + 
Sbjct: 1153 YLLYDDRIVLFDYKTDRY--DEPSQLIERYRGQLALYGEALSRAYSIENIEKYLILLGKD 1210

Query: 931  KVFII 935
            +V ++
Sbjct: 1211 EVQVV 1215


>gi|302879642|ref|YP_003848206.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302582431|gb|ADL56442.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 1099

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 188/968 (19%), Positives = 342/968 (35%), Gaps = 123/968 (12%)

Query: 5    FGLSLNESYEL-IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
             G   +         +L+  P+F        +S  +        K  + L      Q   
Sbjct: 213  LGSEFDVDLTRDPLAELFDRPHFSSQ--VHALSQLLNASAAQKAKAVRLLAPLEGLQLAA 270

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             RF LL     T+K  P+     +  ++    L + ++  + + + + ++  T +++++ 
Sbjct: 271  LRFELLWDELFTKKNEPRAIKANKGQDEV--QLGQAVELVRAQLLDVYNQLQTQQLYQTN 328

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
              +L     L A Y++ K++   LDF DL      LL   D + +++YK+D    H+L+D
Sbjct: 329  CHALRCGVGLLAAYQQLKQRQQCLDFGDLEWRVCQLLNDSDHAEYLQYKLDSRYRHVLLD 388

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT+ +QW++++S    +F       S  T+F VGD KQSIY F  A+ +     +R 
Sbjct: 389  EFQDTNPLQWQILQS----WFAASKAVDSTPTVFVVGDPKQSIYRFRRADARLFDVVRRY 444

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              +       K        + R++  +L  V+ VF      QG        + H++ +  
Sbjct: 445  LVQDYAALHLKK-----NETRRNSPAVLVAVNGVFDGLPEYQGF-------VTHQAHQTS 492

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS------ASILARRIAYTISNMI 357
              G V +    V    S     Q    +  + L +           + A + A  I+ ++
Sbjct: 493  LPGYVGVLPLAVLPEKSDTPSTQNGKLTLRNPLQRAYPDVDAGTRELEAAQFAEKINQIV 552

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
            G   +   G  RV Q  DI+VLVR+R    +     R       I  + + R  L D L 
Sbjct: 553  GVWQVQDEGLSRVAQFSDIMVLVRRRTHLKIYEQALR----RESIPFLTSRRGGLLDTLE 608

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT------------------- 458
              D+ +L  F+++   DL+    L++P+F+ ++DD+ KI                     
Sbjct: 609  ASDIQSLLTFLITPFADLALAHTLRTPIFSCTDDDLMKIQASGLRMQDAGGGDSSASELN 668

Query: 459  --QRHETETVYEYIQKFANCG--ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               R    + ++ ++     G      Q   + +   I +A     HD    I      +
Sbjct: 669  PESRVLNPSWWQRLKSLVETGTATPALQRAHQLLQAWILLADKLPVHDLLDRIYFEGDAQ 728

Query: 515  QQFISR----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-- 568
             ++ +         V+  L  FL   L  +   Y SL   + EL +              
Sbjct: 729  ARYAAAVPEVMCATVLANLQAFLEIALNVDSGRYPSLSGFLRELAELRRADDNESPDEGR 788

Query: 569  ----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 N +RI TVH AKGLE+P+V+L+D  ++    +    +   P+    P        
Sbjct: 789  VAQAGNAIRIYTVHEAKGLEAPIVWLLDANARPPVDRGYDVLVDWPTDAKAPVHFSIYGD 848

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
              SR  +     +        E   LLYV MTRA   L++             +  WY  
Sbjct: 849  KASRGGVRECYFQQEAALALREDLNLLYVAMTRAKQALLVSGSGAQ------LEHCWYQR 902

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            + D+                 +            P    +                    
Sbjct: 903  IADTTEGAAENPLAVAPLLNQRSSIFNPLSCLPDPRLLQV-------------------- 942

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
                     P  +  S +              N    +G+ +H LLQ +       R+N 
Sbjct: 943  --------LPVGMRKSVM--------------NDAQRQGVWLHGLLQYLAIPEALFRENQ 980

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                  +     P+     L      +L  P ++       Y + +           +  
Sbjct: 981  EQEL--QRKLNIPSALMPELWRQAQVMLSAPALSRFFDAQYYLQAANEVGYVNASGQLR- 1037

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
              RID++   +  +++ +YKT       +     +H AQL  Y   ++  YP+K++ C +
Sbjct: 1038 --RIDRLVEFETEVWVLDYKTG------LNSAMQSHAAQLEEYRIAMQAVYPDKAVRCAV 1089

Query: 925  IYVSEPKV 932
            I+     +
Sbjct: 1090 IFAEGNLL 1097


>gi|257082924|ref|ZP_05577285.1| exonuclease RexA [Enterococcus faecalis E1Sol]
 gi|256990954|gb|EEU78256.1| exonuclease RexA [Enterococcus faecalis E1Sol]
          Length = 1264

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 158/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWQASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +S      +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSSELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D           
Sbjct: 770  FQFVRFIEKMQAKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKGFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNQEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|294618395|ref|ZP_06697972.1| recombination helicase AddA [Enterococcus faecium E1679]
 gi|291595345|gb|EFF26661.1| recombination helicase AddA [Enterococcus faecium E1679]
          Length = 1240

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 164/1032 (15%), Positives = 334/1032 (32%), Gaps = 133/1032 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT---ILKKAQTLQQASQTQCIEERFSLLSSF 72
            +  D++                 +E  N       ++ + + +A     +EE ++ L   
Sbjct: 228  VLADIYQCVQLYEQMTQLAQGEGLEKMNEQVAGEQQQIKNIYEAFSQDRLEEAYAGLEQL 287

Query: 73   FLTQKFTPQKNIIT------QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
              +   + +K  +       + +  K+  L +++ KS       +    T K        
Sbjct: 288  TFSTFKSSRKAELKEISNEVKGMRDKAKKLIQQISKSYFPVSPSQMEELTDKALPLVEEM 347

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILI 182
              + +     +   K++  VLDF DL      +L ++   AW+         ++   +++
Sbjct: 348  TKVTQSFMDGFSMRKREKGVLDFNDLEHLALQILTEKTKDAWLPSEASKHYRKKFKEVMV 407

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD + +Q  ++  L E          +   +F VGD KQSIYSF  A+P   + +  
Sbjct: 408  DEYQDVNQLQEAILYWLRE-------PDDTKGNMFMVGDVKQSIYSFRLADPSLFIGKYE 460

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
               K+     +    I L  +FRS  ++L+  + +F    +      +     +      
Sbjct: 461  NFSKK-----EGGRRIVLAENFRSRKEVLSFTNLIFEQLMDPAVGQINYDEAAKLIQGFS 515

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  Q   +++     Q   + E  T        E    +        I  +I +  +
Sbjct: 516  DFPENEQFEPEIMIYEKEQEESEIEIPTDDILEDKTEGELFMT----GLKIRQLIDSSFM 571

Query: 363  FSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              + K    R I+ KDI++L   +K+   I  + + L     I +  ND         I+
Sbjct: 572  IYDKKSKKSRPIEYKDIVLLTPTKKNNLTILEIFKTL----DIPLEMNDAQNYFQATEIR 627

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYIQKFANC 476
             +++L + I +   D+    +L+SP+    E ++  I          + V  Y     + 
Sbjct: 628  TMISLLQLIDNPYQDIPLAAVLRSPIVGLIEPELASIRLADRAHTYYDAVLAYQASNEDE 687

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNF 535
              +K +H  K +     +A+  S  D    I       +  +    G +    L   ++ 
Sbjct: 688  LAAKLEHFGKQLEHWRELARRSSITDLLWDIYYETGYLEYVVGLPAGAQRQANLYALVDR 747

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLV 591
                EQ+S+  L + +  +E+     K           N VR+MT+H +KGLE PVVFL+
Sbjct: 748  AKAYEQSSFRGLYQFVRFIEKMQEKDKDLAEPVISIEDNAVRVMTIHASKGLEFPVVFLL 807

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            D   +        +      L           +          +    +     E  R L
Sbjct: 808  DMTKEFNLQDLRNRYAFEEKLGAGIRYMDPETRVLYDTLPFQAIKLAKQNKLLSEEMRKL 867

Query: 652  YVGMTRASDQLIICKHSNTSNE--------------------KKSNQRTWYDMVYDSFHN 691
            YVG+TRA  +L I        +                    +   + +  + +      
Sbjct: 868  YVGLTRAEQKLFIVGSYKNKEQMIQTWSEAADHEELVFDPALRLKGRSSLMNWIGYGLIR 927

Query: 692  DERVKKIKLTN------------------SINKDEWIAYEWSTHHPENTPLEREETIKQL 733
               ++K                       +           +     N   + +E    L
Sbjct: 928  HPEMQKYLEEEISTSLLQHSNAQFSISWMNQQSIIEQRQLLAEKELVNLDQQMKEDETLL 987

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ--------------- 778
             D  +       P +         + S I    +   ++  S                  
Sbjct: 988  ADSLQKRLAYEYPYQASSQTTSYQSVSEIKRLFEDPDDTQESRLTLESSQNKAASRQFRY 1047

Query: 779  ------------------TFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKLWPAK 819
                                  G   H LLQ++   +P  +  +       +   +    
Sbjct: 1048 TQEQLAEPKFLQKDRQVSAATVGTATHALLQLLPLEMPTTESIHQKLQELVRKRLVDEKV 1107

Query: 820  EYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP---------KKDIIISGRI 868
              K  + SI    +  +    ++   +   E   S  +            + +++I G +
Sbjct: 1108 AKKVDVSSIIWFFQTELGQQLIANKENVKREQPFSMLLPADEVFQDYPNQEDELLIHGIV 1167

Query: 869  DQISISQQNIFIFEYKTHHH----VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CL 923
            D     + ++ I+++KT        P EI+ I   +  QL +Y++ + ++  NK +    
Sbjct: 1168 DGYLEEKDHLNIYDFKTDFILPPDDPAEIDAIVQKYQGQLRLYQQAMSEAL-NKPVENVF 1226

Query: 924  LIYVSEPKVFII 935
            LI +   ++  I
Sbjct: 1227 LILLRVKQIINI 1238


>gi|191638484|ref|YP_001987650.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23]
 gi|251764527|sp|B3WEJ1|ADDA_LACCB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|190712786|emb|CAQ66792.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23]
 gi|327382519|gb|AEA53995.1| ATP-dependent nuclease subunit A [Lactobacillus casei LC2W]
 gi|327385716|gb|AEA57190.1| ATP-dependent nuclease subunit A [Lactobacillus casei BD-II]
          Length = 1234

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 163/1041 (15%), Positives = 315/1041 (30%), Gaps = 131/1041 (12%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI------LKKAQTLQQASQTQC 61
            +  +      + +WP    Q+  I   ++ +    N           +A      +  + 
Sbjct: 205  APEKWEATFSQQIWPRVKGQLLQIATSLTQASALANQLPNPIWYQQIQADLAPLQTLLET 264

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE--------------F 107
                +  + S  ++ +F     I ++ ++    D K   K  +D                
Sbjct: 265  NAPTYDTVRSVLISHEFAAWSRI-SKGLDDADKDTKNAAKDLRDAAKKTWQNKLAPTFAL 323

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDV 165
               +      +          +A          K    V D+ D+  N   +L+      
Sbjct: 324  AAEQIGDLLREAQPLVATLANVALKFEDALTAEKAARHVQDYSDIAHNALRILQQKDPQT 383

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             A I        + +++DE QD S +Q  ++ +++          ++P   F VGD KQS
Sbjct: 384  GAPIADNYRASFDEVMVDEYQDISPLQEALLAAVST---------TTPGDRFMVGDVKQS 434

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284
            IY F  A+P+  + + +  Q   T+       I L  +FRST ++L   + +FS   +  
Sbjct: 435  IYGFRLADPQLFIHKYQTFQDAPTDPAAP-ERIILAENFRSTKNVLAFTNLIFSQIMDPE 493

Query: 285  -QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
               LS D+   +R+ +   G                 + +          D       A+
Sbjct: 494  VGDLSYDNAAALRYGALDYGDAHPAVKVLLYSKATSDEDSSDASELPGDADDNEPVDIAT 553

Query: 344  ILARRIAYTISNMIG----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
               + +   I  +I             + R I  +DI +L R+     LI          
Sbjct: 554  GQTQLVLAEIQRLINDPDAQLWDRQAQEYRRIHYRDITLLTRQTSQNSLIQTQFAA---- 609

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              + +   D         +  ++AL + I +Q+ D+  V +L+SP+   S D +  I   
Sbjct: 610  AGVPLFVADTKNFFKTTELMVMLALLKVIDNQKQDIPLVAVLRSPIVGLSADQLALIRLA 669

Query: 460  RHETETV--------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
              +             E     A        H    +     +A+          I    
Sbjct: 670  AKQVPYYDAVTAFLQAEPKTPLAQRTHDMLTHFFNQLSHFRDLARENDLVTLLWAIYQDT 729

Query: 512  KGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAH 565
                       G++    L   ++     E   +  L   I  +           +    
Sbjct: 730  GFLDYVGGTPGGSQRQANLQALIDRARTYEAGGFKGLFAFIHFITLMQKQDQDLAMPAQV 789

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              +++ V++MT+H +KGLE PVVFL+      F+ +      I+              + 
Sbjct: 790  DPDNDAVKLMTIHKSKGLEFPVVFLMQANKH-FNMRDQTGTAILTKQGIGIKWLDPETRV 848

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            +             +  T  E  RLLYV +TRA  +L +   + + N+  S  +T     
Sbjct: 849  EYELPQYQAAKAARQNQTLAEEMRLLYVALTRAQQRLYVVGATMSGNQLTSADKTVEKWA 908

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH--------------------------- 718
              +      +     + + +  +WI      H                            
Sbjct: 909  AAAEGEARVLAPQVRSGATSYLDWIGPALIRHPQARGLAETTIKPALVGDETEFTIEIDV 968

Query: 719  -PENTPLEREETIKQLM-DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE----- 771
             P+ TP    E +         +                    S  + K   +       
Sbjct: 969  NPQVTPTATPEKVSDDSGTMVDLSAWFKKAYPFQAATTTTGFQSVSEIKRAFDDPDTIDL 1028

Query: 772  -----------------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--FIT 806
                                      S       G   H LLQ++         +   + 
Sbjct: 1029 VNADRFLGPKPPMRDLTAPAFLTETPSGISPAAIGTATHLLLQLVDLAKPITMASLRALR 1088

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINCP------ 858
               T    +         L ++ R  E  +    ++     + EV  S  +         
Sbjct: 1089 DQLTTKQVIAVDVAKHIDLTALIRFFETDLGRLLLAKPQQVHREVPFSMLLPADQVFEAL 1148

Query: 859  ----KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 +D++I G ID     +Q + +F+YKT H+       +   +  QL++Y + L+D 
Sbjct: 1149 ADDPGEDVLIHGIIDGYVSDEQGVTLFDYKTDHNP--NTAVLVDRYRGQLNLYAQALQDL 1206

Query: 915  YPNKSLVCLLIYVSEPKVFII 935
             P   L   L+++    V  +
Sbjct: 1207 QPKPVLHRYLVFLRTGTVVDL 1227


>gi|148378439|ref|YP_001252980.1| recombination helicase AddA [Clostridium botulinum A str. ATCC 3502]
 gi|251764512|sp|A5HYY0|ADDA_CLOBH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|148287923|emb|CAL81989.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC
            3502]
          Length = 1279

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 158/949 (16%), Positives = 308/949 (32%), Gaps = 150/949 (15%)

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKI 173
            ++ S  A   L    +  YE  K++  ++DF D+      +L         + + I    
Sbjct: 331  LYPSMKALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLSILTDKNSEGHIIPSDIALDY 390

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS------------------SPRT 215
             ++   +LIDE QD++L+Q  ++  ++         +                       
Sbjct: 391  RKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGYWSFYNGQLMFNEEEINLEEPQICLDIPN 450

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             F VGD KQSIY F  A+P+  L +           G K   ++L  +FRS  +++  V+
Sbjct: 451  RFMVGDVKQSIYRFRQAKPEIFLDKYNEYS---EEEGTKNRKVKLFKNFRSRKEVINGVN 507

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +F    +      D T     +              ++          ++       D 
Sbjct: 508  YLFKQIMSKTIGELDYTEEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDE 567

Query: 336  LPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                 +  +  R +A  I  ++G +            G+ R +Q +DI++L+R   +   
Sbjct: 568  EEALDNIQLEGRLVAKKIQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAP 627

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            I            I V  +      D   IK +++L + I +   D+  + +L+SP+ +F
Sbjct: 628  I---FVEELAKEGIPVFADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASF 684

Query: 449  SEDDIFKIC------------------TQRHETETVYEYIQKFANCGISKFQH------- 483
            ++D++  I                    +  + ++ Y +  +  N      +        
Sbjct: 685  TDDELIDIRMVNKNITFYECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKN 744

Query: 484  ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538
                 I+ +      +      +F   +           + + G +    L        +
Sbjct: 745  KICSFIEKLKLWREKSIHIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQ 804

Query: 539  NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              + SY  L   I+ +             +    N N VRIM++H +KGLE PVV L  T
Sbjct: 805  YAKTSYKGLFNFINFINKLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGT 864

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            G         K +     L   P       +    + + + +   ++  T  E  R+LYV
Sbjct: 865  GKNFNMTDLNKNILFHRDLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYV 924

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERV 695
             +TRA ++LII    N  ++   +                   +T+ D +  +    +  
Sbjct: 925  ALTRAREKLIITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDA 984

Query: 696  KKIKLTN---------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
               +              +K +W    W+        +E +E       ++ +     S 
Sbjct: 985  VSFREELKMTSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESN 1044

Query: 747  IKNDI--------------NEPYILNPSTID------------------TKGKTNLESLL 774
             K +I              + P  L+ S +                      K       
Sbjct: 1045 YKEEIYKRLSFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEK 1104

Query: 775  SDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
                   RG IIH  +Q +       E   K  I     +    +   +  N    I + 
Sbjct: 1105 KKISPSERGTIIHLFMQHLDLKKAENEEDIKEQINRLIEREFITYEQSKVINPYK-ILKF 1163

Query: 832  LENPMMTTAM-SCDSYSEVSVSGKINC------------PKKDIIISGRIDQISISQQNI 878
                +    + S +   E+  S +I                + +II G ID     +  +
Sbjct: 1164 CRGELGKRILNSNNVNKEMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGL 1223

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             + +YKT +    +IE I   +  Q+  YE+ L      K++    +Y+
Sbjct: 1224 VLLDYKTDYV--NDIEEIKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269


>gi|153930858|ref|YP_001382829.1| recombination helicase AddA [Clostridium botulinum A str. ATCC 19397]
 gi|153935206|ref|YP_001386396.1| recombination helicase AddA [Clostridium botulinum A str. Hall]
 gi|251764508|sp|A7FPG0|ADDA_CLOB1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|152926902|gb|ABS32402.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC
            19397]
 gi|152931120|gb|ABS36619.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. Hall]
          Length = 1279

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 157/949 (16%), Positives = 308/949 (32%), Gaps = 150/949 (15%)

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKI 173
            ++ S  A   L    +  YE  K++  ++DF D+      +L         + + I    
Sbjct: 331  LYPSMKALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLSILTDKNSEGHIIPSDIALDY 390

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS------------------SPRT 215
             ++   +LIDE QD++L+Q  ++  ++         +                       
Sbjct: 391  RKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGYWSFYNGQLMFNEEEINLEEPQICLDIPN 450

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             F VGD KQSIY F  A+P+  L +           G K   ++L  +FRS  +++  V+
Sbjct: 451  RFMVGDVKQSIYRFRQAKPEIFLDKYNEYS---EEEGTKNRKVKLFKNFRSRKEVINGVN 507

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +F    +      D T     +              ++          ++       D 
Sbjct: 508  YLFKQIMSKTIGELDYTEEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDE 567

Query: 336  LPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                 +  +  R +A  I  ++G +            G+ R +Q +DI++L+R   +   
Sbjct: 568  EEALDNIQLEGRLVAKKIQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAP 627

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            I            I V  +      D   IK +++L + I +   D+  + +L+SP+ +F
Sbjct: 628  I---FVEELAKEGIPVFADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASF 684

Query: 449  SEDDIFKIC------------------TQRHETETVYEYIQKFANCGISKFQH------- 483
            ++D++  I                    +  + ++ Y +  +  N      +        
Sbjct: 685  TDDELIDIRMVNKNITFYECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKN 744

Query: 484  ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538
                 I+ +      +      +F   +           + + G +    L        +
Sbjct: 745  KICSFIEKLKLWREKSIHIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQ 804

Query: 539  NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              + SY  L   I+ +             +    N N VRIM++H +KGLE PVV L  T
Sbjct: 805  YAKTSYKGLFNFINFINKLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGT 864

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            G         K +     L   P       +    + + + +   ++  T  E  R+LYV
Sbjct: 865  GKNFNMTDLNKNILFHRDLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYV 924

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERV 695
             +TRA ++LII    N  ++   +                   +T+ D +  +    +  
Sbjct: 925  ALTRAREKLIITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDA 984

Query: 696  KKIKLTN---------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
               +              +K +W    W+        +E +E       ++ +     S 
Sbjct: 985  VSFREELKMTSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESN 1044

Query: 747  IKNDI--------------NEPYILNPSTID------------------TKGKTNLESLL 774
             K +I              + P  L+ S +                      K       
Sbjct: 1045 YKEEIYKRLSFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEK 1104

Query: 775  SDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
                   RG IIH  +Q +       E   K  I     +    +   +  +    I + 
Sbjct: 1105 KKISPSERGTIIHLFMQHLDLKKAENEEDIKEQINRLIEREFITYEQSKVISPYK-ILKF 1163

Query: 832  LENPMMTTAM-SCDSYSEVSVSGKINC------------PKKDIIISGRIDQISISQQNI 878
                +    + S +   E+  S +I                + +II G ID     +  +
Sbjct: 1164 CRGELGKRILNSNNVNKEMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGL 1223

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             + +YKT +    +IE I   +  Q+  YE+ L      K++    +Y+
Sbjct: 1224 VLLDYKTDYV--NDIEEIKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269


>gi|293554030|ref|ZP_06674630.1| recombination helicase AddA [Enterococcus faecium E1039]
 gi|291601812|gb|EFF32064.1| recombination helicase AddA [Enterococcus faecium E1039]
          Length = 1240

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 161/1001 (16%), Positives = 327/1001 (32%), Gaps = 130/1001 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97
                ++ + + +A     +EE ++ L     +   + +K  +       + +  K+  L 
Sbjct: 259  AGEQQQIKNIYEAFSQDRLEEAYAGLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +++ KS       +    T K          + +     +   K++  VLDF DL     
Sbjct: 319  QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378

Query: 158  DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +L ++    W+         ++   +++DE QD + +Q  ++  L E          + 
Sbjct: 379  QILTEKTKDVWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIYSF  A+P   + +     K+     +    I L  +FRS  ++L+ 
Sbjct: 432  GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +     +            Q   +++     Q   + E  T   
Sbjct: 487  TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390
                 E    +        I  +I +  +  + K    R I+ KDI++L   +K+   I 
Sbjct: 547  LEDKTEGELFMT----GLKIRQLIDSTFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + + L     I +  ND         I+ +++L + I +   D+    +L+SP+    E
Sbjct: 603  EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 658

Query: 451  DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             ++  I          + V  Y     N  ++K +H  K +     +A+  S  D    I
Sbjct: 659  PELASIRLADRAHTYYDAVLAYQASNENELVAKLEHFGKQLEHWRELARRSSITDLLWDI 718

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +  +    G +    L   ++     EQ+S+  L + +  +E+     K    
Sbjct: 719  YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778

Query: 567  A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N VR+MT+H +KGLE PVVFL+D   +        +      L          
Sbjct: 779  PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673
             +          +    +     E  R LYVG+TRA  +L I        +         
Sbjct: 839  TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898

Query: 674  -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704
                       +   + +  + +         ++K                       + 
Sbjct: 899  DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 958

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                      +     N   + +E    L D  +       P +         + S I  
Sbjct: 959  QSIIEQRQLLAEKELVNLDQQMKEDETVLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018

Query: 765  KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791
              +   ++  S                                        G   H LLQ
Sbjct: 1019 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078

Query: 792  VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848
            ++   +P  +  +       +   +      K  + SI    +  +    ++   +   E
Sbjct: 1079 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138

Query: 849  VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895
               S  +            + +++I G +D     + ++ I+++KT        P EI+ 
Sbjct: 1139 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDA 1198

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
            I   +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 1199 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 1238


>gi|329576396|gb|EGG57909.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1467]
          Length = 1264

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKHFLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|257085626|ref|ZP_05579987.1| UvrD/REP helicase [Enterococcus faecalis Fly1]
 gi|256993656|gb|EEU80958.1| UvrD/REP helicase [Enterococcus faecalis Fly1]
          Length = 1264

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 158/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWQASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     E  + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKE-ASYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKNHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I   T P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    E  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFETALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|256762121|ref|ZP_05502701.1| exonuclease RexA [Enterococcus faecalis T3]
 gi|257086468|ref|ZP_05580829.1| UvrD/REP helicase [Enterococcus faecalis D6]
 gi|256683372|gb|EEU23067.1| exonuclease RexA [Enterococcus faecalis T3]
 gi|256994498|gb|EEU81800.1| UvrD/REP helicase [Enterococcus faecalis D6]
 gi|315028070|gb|EFT40002.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2137]
          Length = 1264

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWQASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVSQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I   T P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|300859922|ref|ZP_07106010.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11]
 gi|300850740|gb|EFK78489.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11]
          Length = 1264

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 160/965 (16%), Positives = 302/965 (31%), Gaps = 140/965 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHR--SSRIGQVGTVQLWEQVVSQH 318
            +FRS  D+L   + VFS   + +   ++ D +  + H           + +L        
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKD 375
            +S   P+ +S     +   +           A  I  +I  + +  + K    R I  +D
Sbjct: 538  ESVGFPELQSPELLIEDKTEGELYVT-----ALKIRELIDQNFLIYDKKLKTDRPITYQD 592

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I++L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+
Sbjct: 593  IVLLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDI 648

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIK 486
                +L+SP+    E+++  I     ET + YE    F               K     +
Sbjct: 649  PLAAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAE 707

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYS 545
             + +    A+          I               G +    L   ++     E+ ++ 
Sbjct: 708  SLEKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFR 767

Query: 546  SLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
             L + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +     
Sbjct: 768  GLFQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSD 827

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              ++     +L           +          + +   +    E  R LYV +TRA  +
Sbjct: 828  LNERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQK 887

Query: 662  -------------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN----- 691
                                     L++   +   ++          +V     +     
Sbjct: 888  LFLVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQE 947

Query: 692  -----------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                             I+  N       I              E+ +     ++     
Sbjct: 948  VVVSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLAR 1007

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTN------------------------------- 769
                 P +         + S I                                      
Sbjct: 1008 LSFNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDL 1067

Query: 770  ----LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                    +        G   H LLQ+I     P ++    +     +N  + PA   K 
Sbjct: 1068 SKPKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKM 1127

Query: 824  LLLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQI 871
             L  I    +  +    +        E   S  I   +           D++I G ID  
Sbjct: 1128 NLEQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGY 1187

Query: 872  SISQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
                    +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++
Sbjct: 1188 IELDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLN 1247

Query: 929  EPKVF 933
               + 
Sbjct: 1248 GGVII 1252


>gi|256958610|ref|ZP_05562781.1| UvrD/REP helicase [Enterococcus faecalis DS5]
 gi|256949106|gb|EEU65738.1| UvrD/REP helicase [Enterococcus faecalis DS5]
          Length = 1264

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 163/1033 (15%), Positives = 317/1033 (30%), Gaps = 149/1033 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             + +W L   +     +++           L+ A  L +          F   S+     
Sbjct: 253  LQKIWYLAQNEKEQTKQFLQFLER----NDLESAYNLTELLS-------FDRYSTVR--A 299

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
            +         +++ +++      LKK          +    +          + K     
Sbjct: 300  EELKPTAEQAKQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEA 359

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQ 192
            Y   K+   ++DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q
Sbjct: 360  YGAEKRLKNLVDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQ 419

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
              ++  L                LF VGD KQSIYSF  A+P   + +           G
Sbjct: 420  ESILYWLRRPLSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQG 467

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQL 310
            ++   I L  +FRS  D+L   + VFS   + +   ++ D +  + H   +  +      
Sbjct: 468  KEGKRIILAENFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYST 527

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--- 367
               +  +  ++     E  +       +      +    A  I  +I  + +  + K   
Sbjct: 528  ELLIYEKKATESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKT 584

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R I  +DI++L   +K+   I  + + L+    I V  ND         I+ ++AL + 
Sbjct: 585  DRPITYQDIVLLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQL 640

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------I 478
            I +   D+    +L+SP+    E+++  I     ET + YE    F              
Sbjct: 641  IDNPYQDIPLAAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQ 699

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTL 537
             K     + + +    A+     +    I               G +    L   ++   
Sbjct: 700  EKTIRFAESLEKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAA 759

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDT 593
              E+ ++  L + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D 
Sbjct: 760  AYEKTTFRGLFQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDM 819

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +       ++     +L           +          + +   +    E  R LYV
Sbjct: 820  TKEFNVSDLNERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYV 879

Query: 654  GMTRASDQ-------------------------LIICKHSNTSNEKKSNQRTWYDMVYDS 688
             +TRA  +                         L++   +   ++          +V   
Sbjct: 880  ALTRAEQKLFLVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQ 939

Query: 689  FHN----------------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
              +                      I+  N       I              E+ +    
Sbjct: 940  KADEYQQEVVVSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSAD 999

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN----------------------- 769
             ++          P +         + S I                              
Sbjct: 1000 KINRGLARLSFNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIV 1059

Query: 770  ------------LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKL 815
                            +        G   H LLQ+I     P ++    +     +N  +
Sbjct: 1060 NRMIEGDLSKPKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLI 1119

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDII 863
             PA   K  L  I    +  +    +        E   S  I   +           D++
Sbjct: 1120 LPAIAEKMNLEQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLL 1179

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
            I G ID          +++YKT H     PQ I  I   +  Q+++Y + L+++   +  
Sbjct: 1180 IHGIIDGYIELDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVS 1239

Query: 921  VCLLIYVSEPKVF 933
               LI ++   + 
Sbjct: 1240 HVYLILLNGGVII 1252


>gi|327534744|gb|AEA93578.1| ATP-dependent nuclease subunit A [Enterococcus faecalis OG1RF]
          Length = 1271

 Score =  359 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 317  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 377  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 437  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 485  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 545  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 602  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 658  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 717  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 777  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 837  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 897  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 957  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1197 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256

Query: 931  KVF 933
             + 
Sbjct: 1257 VII 1259


>gi|312899588|ref|ZP_07758914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470]
 gi|311293267|gb|EFQ71823.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470]
          Length = 1264

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWQASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I   T P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|256962291|ref|ZP_05566462.1| UvrD/REP helicase [Enterococcus faecalis Merz96]
 gi|293383320|ref|ZP_06629235.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712]
 gi|293387523|ref|ZP_06632072.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613]
 gi|312905827|ref|ZP_07764847.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512]
 gi|312909118|ref|ZP_07767977.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516]
 gi|256952787|gb|EEU69419.1| UvrD/REP helicase [Enterococcus faecalis Merz96]
 gi|291079343|gb|EFE16707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712]
 gi|291083033|gb|EFE19996.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613]
 gi|310628166|gb|EFQ11449.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512]
 gi|311290542|gb|EFQ69098.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516]
          Length = 1264

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/963 (16%), Positives = 299/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GYGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDVQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|29375689|ref|NP_814843.1| exonuclease RexA [Enterococcus faecalis V583]
 gi|81437087|sp|Q836J8|ADDA_ENTFA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|29343150|gb|AAO80913.1| exonuclease RexA [Enterococcus faecalis V583]
          Length = 1264

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|229550393|ref|ZP_04439118.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
            ATCC 29200]
 gi|229304515|gb|EEN70511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
            ATCC 29200]
 gi|315156546|gb|EFU00563.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0043]
 gi|315158289|gb|EFU02306.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0312]
          Length = 1271

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 317  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 377  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 437  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 485  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 545  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 602  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 658  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 717  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 777  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 837  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 897  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 957  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1197 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256

Query: 931  KVF 933
             + 
Sbjct: 1257 VII 1259


>gi|255973164|ref|ZP_05423750.1| UvrD/REP helicase [Enterococcus faecalis T1]
 gi|257422970|ref|ZP_05599960.1| exonuclease rexA [Enterococcus faecalis X98]
 gi|312951365|ref|ZP_07770263.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102]
 gi|255964182|gb|EET96658.1| UvrD/REP helicase [Enterococcus faecalis T1]
 gi|257164794|gb|EEU94754.1| exonuclease rexA [Enterococcus faecalis X98]
 gi|310630625|gb|EFQ13908.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102]
          Length = 1264

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|315573705|gb|EFU85896.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309B]
 gi|315582680|gb|EFU94871.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309A]
          Length = 1264

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|315148450|gb|EFT92466.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4244]
          Length = 1264

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWQASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGEEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|227552897|ref|ZP_03982946.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
            HH22]
 gi|227177969|gb|EEI58941.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
            HH22]
          Length = 1264

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 303/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K   +R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTERPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|239636506|ref|ZP_04677508.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603]
 gi|239597861|gb|EEQ80356.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603]
          Length = 1220

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 158/944 (16%), Positives = 311/944 (32%), Gaps = 130/944 (13%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +    K  DL  K+K           + +   +         + K +   + + K+   V
Sbjct: 303  KASYDKYKDLINKVKNDYFSRTPEDLKRDMQLLAPRVRYLSEIVKDVIHDFSKHKRSRNV 362

Query: 147  LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            LDF D       +L   D   + I     Q  + IL+DE QDT+ +Q +++  +      
Sbjct: 363  LDFADYEHFALQILTNEDGTPSAIADMYRQHFSEILVDEYQDTNRVQEKILSCI------ 416

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
             K    S   LF VGD KQSIY F  A+P   + +         NAG     I+L  +FR
Sbjct: 417  -KTGDESNGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFNVDGQNAG---MRIDLSQNFR 472

Query: 266  STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            S  ++L+  + +F     E    ++ D+   + + +        V+L   V +  ++   
Sbjct: 473  SRKEVLSTTNYLFRHMMDEAVGEITYDNAAQLYYGAPFDEVDHNVELRTLVEASSEN--- 529

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVR 381
                          + +     A  I   + +++    ++       R    KDI++L R
Sbjct: 530  -------------SKLTGTEQEANYIVEQVKDILEHRKVYDMKTNTYRPATYKDIVILER 576

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                        +    D  I    N R    +   ++ +++  R + +   D+  V ++
Sbjct: 577  SYGQARN----LQQAFKDNDIPFHVNSREGYFEQTEVRLILSFLRTVDNPLQDIYLVGLM 632

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIA 495
            +S ++ F+ED++  I       +  Y+ IQ++    ++      K +  +  I      +
Sbjct: 633  RSVIYQFTEDELANIRVFSPNDDYFYQSIQQYIKNDMANKKLVTKLKRFLADIQHYQDYS 692

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            Q    +             Q F    G       L    N T+  E +S+  L + I  +
Sbjct: 693  QRYPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKTIEFENSSFRGLYQFIRFI 752

Query: 555  EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++     K     N      N VR+MT+H++KGLE P V       +   +   +++ + 
Sbjct: 753  DELIDRGKDFGEENIVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKRFNKNDLSRQVVLN 812

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                               +          +K    E  RL+YV +TRA +QLI+     
Sbjct: 813  QKYGLGMDYFDVNEDIAYPSLSSVAYKAINEKEMISEEMRLIYVALTRAKEQLILIGRVK 872

Query: 670  TSNE-----------------KKSNQRTWYDMV--------------------------- 685
               E                 ++    T + M+                           
Sbjct: 873  DEKELGKLERLPISGNHLAVNERLTASTPFTMIYSILAKYQSSSITNDQKFESDIEQLDS 932

Query: 686  ---YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                      +  + I     +++ E    E    +       + +  ++L  E    K 
Sbjct: 933  NVKPRVNLYVDNFEDISTETVVSESEIRTVEDIERYQSGNDDIKAKIKEKLTFEYLYQKD 992

Query: 743  LFSPIKNDINEPYILNPST---------------IDTKGKTNLESLLSDNQTFNRGLIIH 787
            +  P K  ++E      +                + T  +    S     +    G ++H
Sbjct: 993  IEKPSKQSVSELKRQLETEESGTNYDRVRQYRIGVSTYERPKFLSQQGKRKANEVGTLMH 1052

Query: 788  KLLQVIFT----LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-S 842
             ++Q +      L E +   +I     +N     AKE       I   +++ +      +
Sbjct: 1053 TVMQHLPFKKDRLTETELDEYIDLLVERNIIESDAKE-DIRFNEIMTFIQSDLYMNIACA 1111

Query: 843  CDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQ 891
               + E+          ++    + + II G ID I +S+   +  +YKT          
Sbjct: 1112 DRVFRELPFVVNQAKVDQLELVDEGVSIIQGMIDLIYVSEGQYYFVDYKTDAFNRRRGLT 1171

Query: 892  EIE---HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            + E    +   +  Q+  Y   L+     K +   L +     +
Sbjct: 1172 DEEIGQQLKDKYQIQMKYYRNTLETILQTK-VKGYLYFFKFGML 1214


>gi|153938269|ref|YP_001389808.1| recombination helicase AddA [Clostridium botulinum F str. Langeland]
 gi|251764514|sp|A7GAJ8|ADDA_CLOBL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|152934165|gb|ABS39663.1| recombination helicase AddA [Clostridium botulinum F str. Langeland]
 gi|295317895|gb|ADF98272.1| recombination helicase AddA [Clostridium botulinum F str. 230613]
          Length = 1279

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 155/949 (16%), Positives = 308/949 (32%), Gaps = 150/949 (15%)

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKI 173
            ++ S  A   L    +  YE  K++  ++DF D+      +L         + + I    
Sbjct: 331  LYPSMKALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLSILTDKNSDGHIIPSDIALNY 390

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS------------------SPRT 215
             ++   +LIDE QD++L+Q  ++  ++         +                       
Sbjct: 391  RKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGYWSFYNGQLIFNEEEINLEEPQIGLDIPN 450

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             F VGD KQSIY F  A+P+  L +            +K   ++L  +FRS  +++  V+
Sbjct: 451  RFMVGDVKQSIYRFRQAKPEIFLDKYNEYN---EEEDRKNRKVKLFKNFRSREEVINGVN 507

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +F    +      D T     +              ++          ++       D 
Sbjct: 508  YLFKQIMSKTIGELDYTEEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDE 567

Query: 336  LPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                 +  +  R +A  I  ++G +            G+ R +Q +DI++L+R   +   
Sbjct: 568  EEALDNIQLEGRLVAKKIQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAP 627

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            +            I V  +      D   IK +++L + I +   D+  + +L+SP+ +F
Sbjct: 628  V---FVEELAKEGIPVFADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASF 684

Query: 449  SEDDIFKIC------------------TQRHETETVYEYIQKFANCGISKFQH------- 483
            ++D++  I                    +  + ++ Y +  +  N      +        
Sbjct: 685  TDDELIDIRMINKNITFYECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKN 744

Query: 484  ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538
                 I+ +      +      +F   +           + + G +    L        +
Sbjct: 745  KICSFIEKLKLWREKSIHIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQ 804

Query: 539  NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              + SY  L   I+ +             +    N N VRIM++H +KGLE PVV L  T
Sbjct: 805  YAKTSYKGLFNFINFINKLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGT 864

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            G         K +     L   P       +    + + + +   ++  T  E  R+LYV
Sbjct: 865  GKNFNMTDLNKNILFHRDLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYV 924

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERV 695
             +TRA ++LII    N  ++   +                   +T+ D +  +    +  
Sbjct: 925  ALTRAREKLIITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDA 984

Query: 696  KKIKLTN---------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
               +              +K +W    W+        +E +E       ++ +     S 
Sbjct: 985  VSFREELKMTSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESN 1044

Query: 747  IKNDI--------------NEPYILNPSTID------------------TKGKTNLESLL 774
             K +I              + P  L+ S +                      K       
Sbjct: 1045 YKEEIYKRLSFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEK 1104

Query: 775  SDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
                   RG IIH  +Q +       E   K  I     +    +   +  +    I + 
Sbjct: 1105 KKISPSERGTIIHLFMQHLDLKKAESEEDIKEQINRLIEREFITYEQSKVISPYK-ILKF 1163

Query: 832  LENPMMTTAM-SCDSYSEVSVSGKINC------------PKKDIIISGRIDQISISQQNI 878
                +    + S +   E+  S +I                + +II G ID     +  +
Sbjct: 1164 CRGELGKRILNSNNVNKEMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGL 1223

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             + +YKT +    +IE I   +  Q+  YE+ L      K++    +Y+
Sbjct: 1224 VLLDYKTDYV--NDIEEIKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269


>gi|307268773|ref|ZP_07550141.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248]
 gi|306514901|gb|EFM83448.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248]
          Length = 1264

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|322387878|ref|ZP_08061485.1| exonuclease RexA [Streptococcus infantis ATCC 700779]
 gi|321141151|gb|EFX36649.1| exonuclease RexA [Streptococcus infantis ATCC 700779]
          Length = 1216

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 159/1020 (15%), Positives = 336/1020 (32%), Gaps = 140/1020 (13%)

Query: 13   YELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
             + I + LW L  F    +               + +    +   +      +   +L  
Sbjct: 236  AQDIQQILWELESFFRYHLENDAKEFGKAAYLEAVQQVLDEIGALTNESTFNQYQEVLER 295

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFK-STLAS 126
                 K    + +       +  +LKE   + +    ++ I + D+    K  +     S
Sbjct: 296  VVCISKDKGGRALTNASRKAELLELKEAYNQKRKDKFEKLIALNDQITLLKFQEDYHQES 355

Query: 127  LTLA-------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
              LA             Y + K++    +F D+   T ++L+       +R +  +  + 
Sbjct: 356  WDLAMTFQVFMSDFVDAYRKRKREENAFEFADISHYTIEILENFP---QVRKEYQERFHE 412

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    
Sbjct: 413  VMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNE 461

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +     +      ++  +I L  +FRS++++L   + VF        L ++    I +  
Sbjct: 462  KFHSFAQD----SKEGQLILLKENFRSSSEVLNATNDVFKH------LMDEEVGEISYDG 511

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                  G   L     ++ +     +     S  +     +  +   R +   I ++   
Sbjct: 512  MHQLVFGNTDLQPDPENKAEVLLYDKDVDGDSKEEEEFSSNKLTGEMRMVIKEILHLHND 571

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAI 418
                     + +   DI +L   R     +          Y I V  +         L +
Sbjct: 572  ---------KGVPFNDIALLTASRSRNDHVLLALSE----YGIPVKTDGALNNYLQSLEV 618

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG- 477
            + ++   R I +   D + V ++KSP+F+F ED++ ++  Q  E +    + +K  N   
Sbjct: 619  QVMLDTLRVIHNPLQDFALVALMKSPMFSFDEDELARLSLQNSEDKVQENFYEKLVNAQA 678

Query: 478  -------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
                           K    ++ ++     ++  S +D    I   +       +   G 
Sbjct: 679  KTSIQKDLIKSELHKKLNLFLETVNAWRLFSKTHSLYDLIWKIYSERFYYDYVGALPNGQ 738

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA-----NHNEVRIMTVH 578
                 L        + E++++  L   I+ ++Q     K   ++       + V +M++H
Sbjct: 739  ARQANLYALALRADQFEKSNFKGLSRFITMIDQV-LEAKHDLASVTVAPPKDAVELMSIH 797

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSK 626
             +KGLE P VF+++   Q      + ++ +                           +  
Sbjct: 798  KSKGLEFPYVFILNIDQQFNKQDSMSEVILSRKNGLGLKYVARVATNAKEEYLPSTIKLS 857

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----------- 675
              +   S   + L+ ++  E  RLLYV MTRA  +L +    +    +            
Sbjct: 858  IPSLTYSQNEEELQLASYSELMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPTNGQGLL 917

Query: 676  --------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW----STHHPENTP 723
                     N + W   +Y +F  ++    ++        E    +              
Sbjct: 918  TRQTRLDAQNFQDWIWAIYQAFSKEDLHFSVRFEGEEQLTEEAIGKLENKSQLQDLSQAS 977

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID-------------------- 763
              + +TI++ +   K  +      +  IN P +  PS I                     
Sbjct: 978  NRQSDTIREALQMLKEVEVYNEIHRAAINLPSVQTPSQIKKFYEPVMDMEGVVVAGQSRP 1037

Query: 764  ----TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                 + +    S          G   H+L+Q I    +   +    +     A      
Sbjct: 1038 KETTLQFELPDFSKTEKVTGAEIGSATHELMQRINLCHKPSIETLTEALEQVQASSAVKD 1097

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSG--KINCPKKDIIISGRIDQISISQ 875
            +    L  I    +  +    ++     Y E   S   + +  ++D ++ G +D   + +
Sbjct: 1098 KVN--LEKILSFFDTDLGQEILANQDKLYREQPFSMLKRDDKSQEDFVVRGILDGYLVYE 1155

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              I +F+YKT  +       +   +  QL +Y + L  SY    +   LI +   ++  +
Sbjct: 1156 DKIILFDYKTDRY--DYASQLIERYRGQLELYAEALSRSYQIDQVEKYLILL-GKEMVEV 1212


>gi|315170964|gb|EFU14981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1342]
          Length = 1271

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 317  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEAAPIVQEMAHVGKQFMEAYGAEKRLKNL 376

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 377  VDFNDLEHYTLAILAKNQADGWHASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 436

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++ + I L  
Sbjct: 437  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGNRIILAE 484

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 485  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 545  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 602  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 658  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 717  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 777  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 837  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 897  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 957  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1197 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256

Query: 931  KVF 933
             + 
Sbjct: 1257 VII 1259


>gi|315165524|gb|EFU09541.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1302]
          Length = 1271

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 317  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 377  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 437  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 485  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 545  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 602  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 658  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 717  EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 777  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 837  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 897  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 957  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1197 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256

Query: 931  KVF 933
             + 
Sbjct: 1257 VII 1259


>gi|307288582|ref|ZP_07568566.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109]
 gi|306500489|gb|EFM69822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109]
          Length = 1264

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|315144626|gb|EFT88642.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2141]
          Length = 1271

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 159/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 317  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 377  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 437  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 485  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 545  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 602  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 658  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 717  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 777  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 837  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 897  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 957  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I   T P ++    +     +N  + PA   K  L
Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L++S   +     LI ++  
Sbjct: 1197 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQESTHKEVSHVYLILLNGG 1256

Query: 931  KVF 933
             + 
Sbjct: 1257 VII 1259


>gi|295112697|emb|CBL31334.1| DNA helicase/exodeoxyribonuclease V, subunit A [Enterococcus sp.
            7L76]
 gi|315160943|gb|EFU04960.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0645]
          Length = 1264

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 159/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I   T P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L++S   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQESTHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|257418942|ref|ZP_05595936.1| UvrD/REP helicase [Enterococcus faecalis T11]
 gi|257160770|gb|EEU90730.1| UvrD/REP helicase [Enterococcus faecalis T11]
          Length = 1264

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKKFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|170756184|ref|YP_001780091.1| recombination helicase AddA [Clostridium botulinum B1 str. Okra]
 gi|251764513|sp|B1IEN0|ADDA_CLOBK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|169121396|gb|ACA45232.1| ATP-dependent nuclease subunit A [Clostridium botulinum B1 str. Okra]
          Length = 1279

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 155/949 (16%), Positives = 309/949 (32%), Gaps = 150/949 (15%)

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKI 173
            ++ S  A   L    +  YE  K++  ++DF D+      +L         + + I    
Sbjct: 331  LYPSMKALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLSILTDKNSDGHIIPSDIALNY 390

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS------------------SPRT 215
             ++   +LIDE QD++L+Q  ++  ++         +                       
Sbjct: 391  RKKFAEVLIDEYQDSNLVQEVIMSMVSRVKGYWSFYNGQLIFNEKEINLEEPQIGLDIPN 450

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             F VGD KQSIY F  A+P+  L +            +K   ++L  +FRS  +++  V+
Sbjct: 451  RFMVGDVKQSIYRFRQAKPEIFLDKYNEY---NEEEDRKNRKVKLFKNFRSREEVINGVN 507

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +F    +      D T     +              ++          ++       D 
Sbjct: 508  YLFKQIMSKTIGELDYTEEEALKVGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDE 567

Query: 336  LPQESSASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                 +  +  R +A  I  ++G +            G+ R +Q +DI++L+R   +   
Sbjct: 568  EEALDNIQLEGRLVAKKIQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAP 627

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            +            I V  +      D   IK +++L + I +   D+  + +L+SP+ +F
Sbjct: 628  V---FVEELAKEGIPVFADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASF 684

Query: 449  SEDDIFKIC------------------TQRHETETVYEYIQKFANCGISKFQH------- 483
            ++D++  I                    +  + ++ Y +  +  N      +        
Sbjct: 685  TDDELIDIRMVNKNITFYECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKN 744

Query: 484  ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538
                 I+ +      +      +F   +           + + G +    L        +
Sbjct: 745  KICSFIEKLKLWREKSIHIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQ 804

Query: 539  NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              + SY  L   I+ +             +    N N VRIM++H +KGLE PVV L  T
Sbjct: 805  YAKTSYKGLFNFINFINKLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGT 864

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            G         K +     L   P       +    + + + +   ++  T  E  R+LYV
Sbjct: 865  GKNFNMTDLNKNILFHRDLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYV 924

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERV 695
             +TRA ++LII    N  ++   +                   +T+ D +  +    +  
Sbjct: 925  ALTRAREKLIITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDA 984

Query: 696  KKIKLTN---------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
               +              +K +W    W+        +E +E       ++ +     S 
Sbjct: 985  VSFREELKMTSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMSLEESN 1044

Query: 747  IKNDI--------------NEPYILNPSTID------------------TKGKTNLESLL 774
             K +I              + P  L+ S +                      K       
Sbjct: 1045 YKEEIYKRLSFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEK 1104

Query: 775  SDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
                   RG IIH  +Q +       E   K  I     +    +   +  +    I + 
Sbjct: 1105 KKISPSERGTIIHLFMQHLDLKKAENEEDIKEQINRLIEREFITYEQSKVISPYK-ILKF 1163

Query: 832  LENPMMTTAM-SCDSYSEVSVSGKINCPK------------KDIIISGRIDQISISQQNI 878
                +    + S +   E+  S +I   +            + +II G ID     +  +
Sbjct: 1164 CRGELGKRILNSNNVNKEMPFSIEIPALEIYKELDKEIYKNEKLIIQGVIDCYFEEEDGL 1223

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             + +YKT +    +IE I   +  Q+  YE+ L      K++    +Y+
Sbjct: 1224 VLLDYKTDYV--NDIEEIKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 1269


>gi|295091233|emb|CBK77340.1| recombination helicase AddA, Firmicutes type [Clostridium cf.
            saccharolyticum K10]
          Length = 1273

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 165/1089 (15%), Positives = 336/1089 (30%), Gaps = 170/1089 (15%)

Query: 2    KNRFGLSLNESYEL------IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TIL 47
            +     +  E+ +       + +D+          + +   L  E   P        + L
Sbjct: 196  RRELSDTSVEALDRTGWMQFLLEDVRRQASEWAGQLQEAARLCSEEDGPGAYLPMILSDL 255

Query: 48   KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE- 106
              A+ L++ S      +  S      L        + +  +  +K  + ++++KK+ ++ 
Sbjct: 256  SNAEKLREVSGYDSFVQAASGFEFPKLAAVRGKH-SPVNPDKKEKVSECRKRIKKAVEKM 314

Query: 107  ----FIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
                     +          ++ L  LTLA+     +E  K++  ++DF DL      +L
Sbjct: 315  KGQFLFASEEEILADLAGSSEAVLMLLTLAEDFAGRFEAKKRERNLVDFNDLEHLALQVL 374

Query: 161  KKRDV------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
             + +        +     +  + + IL+DE QD++L+Q  +IR+++ +            
Sbjct: 375  YQEEKEGGEHRPSEAADLLAGQFDEILVDEYQDSNLVQEALIRAVSRE-------RFGTP 427

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             +F VGD KQSIY F  A P+  L +     K        +  IEL  +FRS   +L   
Sbjct: 428  NVFMVGDVKQSIYKFRLARPELFLEKYHSYTKE----DSLYQKIELHQNFRSRRQVLEST 483

Query: 275  DKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
            + VF     EN   +S    T +   +S           E  +S  D+     +      
Sbjct: 484  NDVFYRIMTENLGSISYTEETALHPGASFEPLPQERGRKEAELSGSDAGQTAGEAGEDGP 543

Query: 333  -------------------------FDSLPQESSASILARRIAYTISNMIGTDT-----I 362
                                      D +   +   + AR I   I  +   +       
Sbjct: 544  LEEQRDPFSTEILLINTKDSVLEELDDDISDYTRQELEARMIGKRIRELTDPERGCPVWD 603

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               G+ R  + +DI++L+R                    I      +      + ++ ++
Sbjct: 604  KELGRYRKAEYRDIVILLRSVSGWA---ESFVETLAHQGIPAFAESKTGYFTTIEVETML 660

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------------- 468
                 + +   D+    +LK+P F  ++ ++ +I  +   +    +              
Sbjct: 661  NFLAVLDNPMQDIPLTAVLKAPFFGLTDRELAEIAARFKHSANRGQDRGMYGAICLYLGE 720

Query: 469  -----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                          +     + K     +   +L   A +   H+    I          
Sbjct: 721  SDQAGETMQSSAEGEREPEILEKLASFFRVTEQLRREAVYLPIHELIYRIFDVTGYYDYV 780

Query: 518  -ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNE 571
                 G      LD  +      E  SY  +   I  +E+              +   N 
Sbjct: 781  SAMPAGETRRANLDMLVEKAAAYEATSYRGVFHFIKYIEKLKKYNTDFGEASTAAEGGNT 840

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            VRIM++H +KGLE P+VF+   G Q        K+ I               + K+    
Sbjct: 841  VRIMSIHKSKGLEFPIVFVAAMGKQFNRQDTRGKILIDSRFGIGTDYLNAETRLKAPTLK 900

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ------------- 678
             + L + +      E  R+LYV MTRA ++LI+         K                 
Sbjct: 901  KNVLKRRMDLENMGEELRVLYVAMTRAKEKLILTASDRNLEAKLEKWKELLDTGERGLAF 960

Query: 679  ------RTWYDMVYDSFHND-------ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                   ++ D V  +           E + K  L+  I +              +   E
Sbjct: 961  TLLSLAGSYLDWVLMAMEGGVCRIWMREVMAKELLSEEIGEQVRRKVTKDMLLWPDREEE 1020

Query: 726  REETIK----------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
             EE+            +     +       P ++++     ++ S I  +G   L    +
Sbjct: 1021 GEESPASQIFGLMGDEEYRKRLEESFSFQYPWEDELRLNTKMSVSDIKKEGDEELFEESA 1080

Query: 776  DN--------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                            Q   RG   H+ ++++      K+ +          +     + 
Sbjct: 1081 FLPTIPSFLSGEEKEVQGARRGTAYHRAMELLSFHEIRKKSDIKEQLDRLVEEGKMTADS 1140

Query: 822  KNLLLS--ITRLLENPMMTTAMSCDS----YSEVSVSGKINCP-------KKDIIISGRI 868
            + L+    I     + +     +         E      I           + +++ G I
Sbjct: 1141 RELVRESVIWPFFSSDLGKRMAAAQREGRLKKESQFVIGIPARQMGDFNSDELVLVQGII 1200

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            D        + + +YKT +   ++ E +   +  QL  Y + L      +    ++    
Sbjct: 1201 DAFFEEDGELVLVDYKTDYV--EKEETLRERYGIQLDYYRRALMQMEKKRVKETVIYSFR 1258

Query: 929  EPKVFIIPQ 937
              +V + P+
Sbjct: 1259 LGEVRLQPE 1267


>gi|257078036|ref|ZP_05572397.1| UvrD/REP helicase [Enterococcus faecalis JH1]
 gi|294780984|ref|ZP_06746336.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1]
 gi|256986066|gb|EEU73368.1| UvrD/REP helicase [Enterococcus faecalis JH1]
 gi|294451930|gb|EFG20380.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1]
 gi|315031591|gb|EFT43523.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0017]
 gi|315034967|gb|EFT46899.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0027]
 gi|323480352|gb|ADX79791.1| recombination helicase AddA [Enterococcus faecalis 62]
          Length = 1264

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/963 (16%), Positives = 300/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|257884720|ref|ZP_05664373.1| UvrD/REP helicase [Enterococcus faecium 1,231,501]
 gi|257820558|gb|EEV47706.1| UvrD/REP helicase [Enterococcus faecium 1,231,501]
          Length = 1240

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 160/1001 (15%), Positives = 326/1001 (32%), Gaps = 130/1001 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97
                ++ + + +A     +EE ++ L     +   + +K  +       + +  K+  L 
Sbjct: 259  AGEQQQIKNIYEAFSQDRLEEAYAGLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +++ KS       +    T K          + +     +   K++  VLDF DL     
Sbjct: 319  QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378

Query: 158  DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +L ++    W+         ++   +++DE QD + +Q  ++  L E          + 
Sbjct: 379  QILTEKTKDVWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIYSF  A+P   + +     K+     +    I L  +FRS  ++L+ 
Sbjct: 432  GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +     +            Q   +++     Q   + E  T   
Sbjct: 487  TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390
                 E    +        I  +I +  +  + K    R I+ KDI++L   +K+   I 
Sbjct: 547  LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + + L     I +  ND         I+ +++L + I +   D+    +L+SP+    E
Sbjct: 603  EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 658

Query: 451  DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             ++  I          + V  Y     +   +K +H  K +     +A+  S  D    I
Sbjct: 659  PELASIRLADRAHTYYDAVLAYQASNEDELAAKLEHFGKQLDHWRELARRSSITDLLWDI 718

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +  +    G +    L   ++     EQ+S+  L + +  +E+     K    
Sbjct: 719  YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778

Query: 567  A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N VR+MT+H +KGLE PVVFL+D   +        +      L          
Sbjct: 779  PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673
             +          +    +     E  R LYVG+TRA  +L I        +         
Sbjct: 839  TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898

Query: 674  -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704
                       +   + +  + +         ++K                       + 
Sbjct: 899  DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 958

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                      +     N   + +E    L D  +       P +         + S I  
Sbjct: 959  QSIIEQRQLLAEKELVNLDQQMKEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018

Query: 765  KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791
              +   ++  S                                        G   H LLQ
Sbjct: 1019 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078

Query: 792  VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848
            ++   +P  +  +       +   +      K  + SI    +  +    ++   +   E
Sbjct: 1079 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138

Query: 849  VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895
               S  +            + +++I G +D     + ++ I+++KT        P EI+ 
Sbjct: 1139 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDNPAEIDA 1198

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
            I   +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 1199 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 1238


>gi|257415727|ref|ZP_05592721.1| UvrD/REP helicase [Enterococcus faecalis AR01/DG]
 gi|257157555|gb|EEU87515.1| UvrD/REP helicase [Enterococcus faecalis ARO1/DG]
          Length = 1264

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 156/963 (16%), Positives = 299/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWQASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|126179444|ref|YP_001047409.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
 gi|125862238|gb|ABN57427.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
          Length = 1080

 Score =  358 bits (918), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 164/975 (16%), Positives = 313/975 (32%), Gaps = 115/975 (11%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +        E+ E       P              L+           A  L+       
Sbjct: 191  RTALERCQTEALEAFLSRAAPSIETLRD-------LAARYPGERDPAGAY-LRAVEPCLA 242

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQE---------INKKSPDLKEKLKKSQDEFIKIRD 112
             E   + L++         +KN+  ++         +      L++ L           D
Sbjct: 243  GEIAVAELAAVH--DNSGFRKNMGQKKNWEGDDLDNLRAAYGVLRQCLTDHAGACSLTLD 300

Query: 113  RF--NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
                 T            + K      E  K++   LDF+DL+  T+ L + R       
Sbjct: 301  AADPFTRATLDFLRDLGVVFKAFLDSVEAEKRRMNALDFDDLVNRTHRLFRDRGDIVETH 360

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            ++       IL+DE QDT  +Q  +IR+L  D             LF VGD KQSIY F 
Sbjct: 361  FR--SRFRFILVDEFQDTDPVQIAIIRTLLGD----------SANLFVVGDPKQSIYLFR 408

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
             A+  +    + + ++           + L ++FRST +++   + VFS      G   +
Sbjct: 409  EADVTQFSHTRDLIERDLGG-----ETVALDVNFRSTPEVVGFTNAVFSALMAEAGRPWE 463

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                  H + R    G+V+L      +  +                         A   A
Sbjct: 464  FLYEPLH-AFRRDDAGSVELLLCQKIRDRAAG-------------------RRAEAEMAA 503

Query: 351  YTISNMIGTD--TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
              I +++      +  +G+ R     D+ VL+ +R +     +        Y +    + 
Sbjct: 504  RKIRSLVERGEKRVSRDGEVRPAGYGDVAVLLERRTNLAYYEWAL----ARYGVPYHVHA 559

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                 +   + DL  + RF+ +  DD +   +L+SP F FS+  +F I   R    +++E
Sbjct: 560  GLGFYERQEVYDLYNILRFLANNLDDAALYGVLRSPYFGFSDARLFHI--ARAPGASLWE 617

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVID 527
             +Q  A    +        + E + +++   P      I+        F     G +   
Sbjct: 618  RLQAAAEPAAA-------TLREWLSLSRRLPPARLLRRIVDESGIFVVFGGMAGGEQAAA 670

Query: 528  VLDEFLNFTLRNEQNSYSSL-QELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLES 585
             +++ +      + ++ +    EL   ++            A+ + V IMTVH AKGLE 
Sbjct: 671  NVEKLIALARDADCSTLAGFVAELGRSIDAGDREGDAPLDLASADSVSIMTVHAAKGLEF 730

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            PVV + D      S      +     L      P    +      ++  L    ++  + 
Sbjct: 731  PVVVVPDLAETPRSGGGTIMVEDGLLLGVSIPNPANDHER-EETPVLRLLKDEYRQKEEA 789

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E  RL YV +TRA D LI+C     +  +                        +    + 
Sbjct: 790  ERKRLFYVAVTRAEDHLILCGEMPVAVPESLRDARTRMAWLAHCLGLCDEVYARGEAVLG 849

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI--KNDINEPYILNPSTID 763
                      T  P   P++ +ET+   +           P    ++  +  + + S ++
Sbjct: 850  TLRIPI----TLDPAAIPVDVQETVPVCLPVPDDVPAAPVPAGIPSNGKKERVYSASELE 905

Query: 764  TKGKTNLESLL----SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
               +   ES L    +      RGL++H++               +  Y           
Sbjct: 906  AYLRGPAESRLPVFAAGEDALTRGLVVHEVF------RGRDPAAVLRRY------GLDPA 953

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQNI 878
                      R L +P+M   +      EV  S ++N         G ID++        
Sbjct: 954  GAVEYQELYVRFLASPLMRGIVRDH--REVPFSARVN----GFAFRGVIDRLVQRVNGTW 1007

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV--FIIP 936
             + +YKT              +  Q+++Y +          +   L +V   +     + 
Sbjct: 1008 MLIDYKTGTPGDAGE------YAIQMAVYHRAAAQILSA-PVTPYLYFVDADRWAEIEVD 1060

Query: 937  QNKLNKAFAEISTKI 951
            ++ +    +   + I
Sbjct: 1061 EDLVFAEISRAISGI 1075


>gi|315153691|gb|EFT97707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0031]
          Length = 1271

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 317  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 377  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 437  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 485  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 545  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 602  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 658  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 717  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 777  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 837  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 897  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGLTLVRHQKADEYQQEVV 956

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 957  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1197 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256

Query: 931  KVF 933
             + 
Sbjct: 1257 VII 1259


>gi|293569779|ref|ZP_06680866.1| recombination helicase AddA [Enterococcus faecium E1071]
 gi|291587527|gb|EFF19404.1| recombination helicase AddA [Enterococcus faecium E1071]
          Length = 1240

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 161/1001 (16%), Positives = 327/1001 (32%), Gaps = 130/1001 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97
                ++ + + +A     +EE ++ L     +   + +K  +       + +  K+  L 
Sbjct: 259  AGEQQQIKNIYEAFSQDRLEEAYAGLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +++ KS       +    T K          + +     +   K++  VLDF DL     
Sbjct: 319  QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378

Query: 158  DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +L ++   AW+         ++   +++DE QD + +Q  ++  L E          + 
Sbjct: 379  QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIYSF  A+P   + +     K+     +    I L  +FRS  ++L+ 
Sbjct: 432  GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +     +            Q   +++     Q   + E  T   
Sbjct: 487  TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390
                 E    +        I  +I +  +  + K    R I+ KDI++L   +K+   I 
Sbjct: 547  LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + + L     I +  ND         I+ +++L + I +   D+    +L+SP+    E
Sbjct: 603  EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 658

Query: 451  DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             ++  I          + V  Y     +   +K +H  K +     +A+  S  D    I
Sbjct: 659  PELASIRLADRAHTYYDAVLAYQASNEDELAAKLEHFGKQLEHWRELARRSSITDLLWDI 718

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +  +    G +    L   ++     EQ+S+  L + +  +E+     K    
Sbjct: 719  YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778

Query: 567  A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N VR+MT+H +KGLE PVVFL+D   +        +      L          
Sbjct: 779  PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673
             +          +    +     E  R LYVG+TRA  +L I        +         
Sbjct: 839  TRVLYDTLPFQAIKLVKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898

Query: 674  -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704
                       +   + +  + +         ++K                       + 
Sbjct: 899  DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 958

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                      +     N   + +E    L D  +       P +         + S I  
Sbjct: 959  QSIIEQRQLLAEKELVNLDQQMKEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018

Query: 765  KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791
              +   ++  S                                        G   H LLQ
Sbjct: 1019 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078

Query: 792  VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848
            ++   +P  +  +       +   +      K  + SI    +  +    ++   +   E
Sbjct: 1079 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138

Query: 849  VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895
               S  +            + +++I G +D     + ++ I+++KT        P EI+ 
Sbjct: 1139 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDA 1198

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
            I   +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 1199 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 1238


>gi|69246355|ref|ZP_00603911.1| UvrD/REP helicase [Enterococcus faecium DO]
 gi|258616338|ref|ZP_05714108.1| exonuclease RexA [Enterococcus faecium DO]
 gi|68195308|gb|EAN09759.1| UvrD/REP helicase [Enterococcus faecium DO]
          Length = 1240

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 160/1001 (15%), Positives = 326/1001 (32%), Gaps = 130/1001 (12%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLK 97
                ++ + + +A     +EE ++ L     +   + +K  +       + +  K+  L 
Sbjct: 259  AGEQQQIKNIYEAFSQDRLEEAYAGLEQLTFSTFKSSRKAELKEISNEVKGMRDKAKKLI 318

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +++ KS       +    T K          + +     +   K++  VLDF DL     
Sbjct: 319  QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 378

Query: 158  DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +L ++   AW+         ++   +++DE QD + +Q  ++  L E          + 
Sbjct: 379  QILTEKTKDAWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 431

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIYSF  A+P   + +     K+     +    I L  +FRS  ++L+ 
Sbjct: 432  GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 486

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F    +      +     +            Q   +++     Q   + E  T   
Sbjct: 487  TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 546

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390
                 E    +        I  +I +  +  + K    R I+ KDI++L   +K+   I 
Sbjct: 547  LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 602

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             + + L     I +   D         I+ +++L + I +   D+    +L+SP+    E
Sbjct: 603  EIFKTL----DIPLEMKDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 658

Query: 451  DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             ++  I          + V  Y     +   +K +H  K +     +A+  S  D    I
Sbjct: 659  PELASIRLADRAHTYYDAVLAYQASNEDELAAKLEHFGKQLEHWRELARRSSITDLLWDI 718

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +  +    G +    L   ++     EQ+S+  L + +  +E+     K    
Sbjct: 719  YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 778

Query: 567  A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N VR+MT+H +KGLE PVVFL+D   +        +      L          
Sbjct: 779  PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 838

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673
             +          +    +     E  R LYVG+TRA  +L I        +         
Sbjct: 839  TRVLYDTLPFQAIKLVKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 898

Query: 674  -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704
                       +   + +  + +         ++K                       + 
Sbjct: 899  DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 958

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                      +     N   + +E    L D  +       P +         + S I  
Sbjct: 959  QSIIEQRQLLAEKELVNLDQQMKEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 1018

Query: 765  KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791
              +   ++  S                                        G   H LLQ
Sbjct: 1019 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 1078

Query: 792  VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848
            ++   +P  +  +       +   +      K  + SI    +  +    ++   +   E
Sbjct: 1079 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 1138

Query: 849  VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895
               S  +            + +++I G +D     + ++ I+++KT        P EI+ 
Sbjct: 1139 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDA 1198

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
            I   +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 1199 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 1238


>gi|315038484|ref|YP_004032052.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus
            GRL 1112]
 gi|312276617|gb|ADQ59257.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus
            GRL 1112]
          Length = 1205

 Score =  358 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 163/985 (16%), Positives = 306/985 (31%), Gaps = 128/985 (12%)

Query: 46   ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105
                   L    + +  +E+  LL       ++  + +   +++ +   DL++   +++ 
Sbjct: 253  DQNLQNFLAALDEDKPYDEQRDLLRLCTFNGRY-RKSSKWDEDLLEFYGDLQKLKDEAKS 311

Query: 106  EFIKIRDRFNTYKMFKST----------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
            +       F      +             A       L   + + K+   ++D+ D+   
Sbjct: 312  QVFDTFTAFFATDEKEQVKVMQDGQKIVAAIAQAEIALIERFNKLKRDENLIDYSDMEQL 371

Query: 156  TNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               +L +    S   R     +   IL+DE QD + +Q  +I+ +               
Sbjct: 372  AYRILSQDTSSSQMARDFYQSKFKEILVDEYQDINALQENIIQQV---------RQPGKN 422

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            TLF VGD KQSIY F  AEP   LR+     +           I L  +FRST  +   V
Sbjct: 423  TLFMVGDVKQSIYGFRQAEPSLFLRKYHDFAQEQNEHE---ERILLSDNFRSTEPVTRTV 479

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + +F+   ++     D     +           +    +V+     +   +      + +
Sbjct: 480  NHLFNSILSSNFGGIDYQKEGQLVFGAKYYPSNLPKASEVIIHKKERGGDENSDKVDFSE 539

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391
                        + +   I  +        +   G+ R ++  DI +L R   D      
Sbjct: 540  I-----------QMVLARIKQLKEEHMQVFDSKSGQMREMKYSDIAILTRSHSD----NL 584

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                      I +   D         +  +M   + I + + D+  V +L+SPLFNF E 
Sbjct: 585  EIMQEFAKQDIPLFVTDAENYFQTFELTVIMNYLKIIDNPDQDIPLVTVLRSPLFNFGEK 644

Query: 452  DIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
            D+ KI  +   +             +    K +  +  +  L   A      +    I  
Sbjct: 645  DLAKIRIKSKNSSFYSALTSYVGVGDQLSDKCKDFLNQLASLREFATTHRISELIWSIYT 704

Query: 510  AKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKR 563
                 +   +   G +    L+         E   +  L + I+ +      Q       
Sbjct: 705  RTNLLEIMTALPNGEQRRVNLEALYERATSYESAGFKGLYQFINFINRMRQSQKDLAQPL 764

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  N VR+MT+H +KGLE P+VF +    Q           I     D  G+ +   
Sbjct: 765  LTKEAGNAVRLMTIHGSKGLEFPIVFYLGMHHQYQLRDLKGDYVI---NADGLGVTLREE 821

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR---T 680
              +  + + +      K+   EE  R+LYV +TRA  +LI+     + ++K  +      
Sbjct: 822  HYRIDSLVKAMGNITKKRQLLEEEARILYVALTRAKQKLIMVGDIPSFDKKVKDWSNELD 881

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST------------------------ 716
                +  +           +  ++  D  +A   S                         
Sbjct: 882  HEGQLSLADKLAATTPLSFMGPALAFDRRVAMRISDITNSLDQSQPILFVDFSDDAIANN 941

Query: 717  --HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
              +  + T  + E  IK+L +      +   P K+ I        S I        E+ L
Sbjct: 942  AVNEEKETRKDSEPEIKKLTETATKLYQFDYPFKDAIATTAYQAVSEIKKAFNDPDEAEL 1001

Query: 775  SDN-------------------------QTFNRGLIIHKLLQVIF---TLPEHKRKNFIT 806
             ++                              G   H +LQ         + + +  I 
Sbjct: 1002 ENSHLLASTNRYLQPIDTKPSFLYQTKFTGAEIGTATHLILQYYDYTGDGSDEQLEQEIQ 1061

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVSG---------K 854
                +  K   A    +L         +            D   EV  S           
Sbjct: 1062 HLIEQ--KKLNADIVSSLKKDQIEWFVHSDFAKDFWQRPEDLKREVDFSSLLSARTLFDD 1119

Query: 855  INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKI 910
             + P   I++ G ID   I    I +F+YKT H     ++     I   +  QL +YE+ 
Sbjct: 1120 FSDPNAKILVHGTIDGYFIINNGIILFDYKTDHVDKSHLDEAIELIKEKYTGQLRLYERA 1179

Query: 911  LKDSYPNKSLVCLLIYVSEPKVFII 935
            L +    K +   LI +   +   +
Sbjct: 1180 LNEFSTKKVIGKYLILLDAKQAVEV 1204


>gi|283795557|ref|ZP_06344710.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1]
 gi|291077226|gb|EFE14590.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1]
          Length = 1273

 Score =  358 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 164/1089 (15%), Positives = 334/1089 (30%), Gaps = 170/1089 (15%)

Query: 2    KNRFGLSLNESYEL------IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TIL 47
            +     +  E+ +       + +D+          + +   L  E   P        + L
Sbjct: 196  RRELSDTSVEALDRTGWMQFLLEDVRRQASEWAGQLQEAARLCSEEDGPGAYLPMILSDL 255

Query: 48   KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE- 106
              A+ L++ S      +  S      L        + +  +  +K  + ++++KK+ ++ 
Sbjct: 256  SNAEKLREVSGYDSFVQAASGFEFPKLAAVRGKH-SPVNPDKKEKVSECRKRIKKAVEKM 314

Query: 107  ----FIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
                     +          ++ L  LTLA+     +E  K++  ++DF DL      +L
Sbjct: 315  KGQFLFASEEEILADLAGSSEAVLMLLTLAEDFAGRFEAKKRERNLVDFNDLEHLALQVL 374

Query: 161  KKRDV------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
             + +              +  + + IL+DE QD++L+Q  +IR+++ +            
Sbjct: 375  YQEEKEGGEHRPGEAADLLAGQFDEILVDEYQDSNLVQEALIRAVSRE-------RFGTP 427

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             +F VGD KQSIY F  A P+  L +     K        +  IEL  +FRS   +L   
Sbjct: 428  NVFMVGDVKQSIYKFRLARPELFLEKYHSYTKE----DSLYQKIELHQNFRSRRQVLEST 483

Query: 275  DKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGT-----VQLWEQVVSQHDSQCNP--- 324
            + VF     EN   +S    T +   +S             +L      Q   +      
Sbjct: 484  NDVFYRIMTENLGSISYTEETALHPGASFEPLPQERGRKEAELSGSAAGQTAGEAGEDGP 543

Query: 325  -----------------QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362
                             +        D +   +   + AR I   I  +   +       
Sbjct: 544  LEEQRDPFSTEILLINTKDSVLEELDDDISDYTRQELEARMIGKRIRELTDPERGCPVWD 603

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               G+ R  + +DI++L+R                    I      +      + ++ ++
Sbjct: 604  KELGRYRKAEYRDIVILLRSVSGWA---ESFVETLAHQGIPAFAESKTGYFTTIEVETML 660

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------------- 468
                 + +   D+    +LK+P F  ++ ++ +I  +   +    +              
Sbjct: 661  NFLAVLDNPMQDIPLTAVLKAPFFGLTDRELAEIAARFKHSANRGQDRGMYGAICLYLGE 720

Query: 469  -----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                          +     + K     +   +L   A +   H+    I          
Sbjct: 721  SDQAGETMQSSAEGEREPEILEKLASFFRVTEQLRREAVYLPIHELIYRIFDVTGYYDYV 780

Query: 518  -ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNE 571
                 G      LD  +      E  SY  +   I  +E+              +   N 
Sbjct: 781  SAMPAGETRRANLDMLVEKAAAYEATSYRGVFHFIKYIEKLKKYNTDFGEASTAAEGGNT 840

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            VRIM++H +KGLE P+VF+   G Q        K+ I               + K+    
Sbjct: 841  VRIMSIHKSKGLEFPIVFVAAMGKQFNRQDTRGKILIDSRFGIGTDYLNAETRLKAPTLK 900

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ------------- 678
             + L + +      E  R+LYV MTRA ++LI+         K                 
Sbjct: 901  KNVLKRRMDLENMGEELRVLYVAMTRAKEKLILTASDRNLEAKLEKWKELLDTGERGLAF 960

Query: 679  ------RTWYDMVYDSFHND-------ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                   ++ D V  +           E + K  L+  I +              +   E
Sbjct: 961  TLLSLAGSYLDWVLMAMEGGVCRIWMREVMAKELLSEEIGEQVRRKVTKDMLLWPDREEE 1020

Query: 726  REETIK----------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
             EE+            +     +       P ++++     ++ S I  +G   L    +
Sbjct: 1021 GEESPASQIFGMLGDEEYRKRLEESFSFQYPWEDELRLNTKMSVSDIKKEGDEELFEESA 1080

Query: 776  DN--------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                            Q   RG   H+ ++++      K+ +          +     + 
Sbjct: 1081 FLPTIPSFLSGEEKEVQGARRGTAYHRAMELLSFHEIRKKSDIKEQLDRLVEEGKMTADS 1140

Query: 822  KNLLLS--ITRLLENPMMTTAMSCDS----YSEVSVSGKINCPKKD-------IIISGRI 868
            + L+    I     + +     +         E      I   +         +++ G I
Sbjct: 1141 RELVRESVIWPFFSSDLGKRMAAAQREGRLKKESQFVIGIPAREMGDFNSDELVLVQGII 1200

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            D        + + +YKT +   ++ E +   +  QL  Y + L      +    ++    
Sbjct: 1201 DAFFEEDGELVLVDYKTDYV--EKEETLRERYGIQLDYYRRALMQMEKKRVKETVIYSFR 1258

Query: 929  EPKVFIIPQ 937
              +V + P+
Sbjct: 1259 LGEVRLQPE 1267


>gi|315168381|gb|EFU12398.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1341]
          Length = 1264

 Score =  358 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 157/963 (16%), Positives = 301/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSNVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|256618697|ref|ZP_05475543.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200]
 gi|257089525|ref|ZP_05583886.1| exonuclease rexA [Enterococcus faecalis CH188]
 gi|256598224|gb|EEU17400.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200]
 gi|256998337|gb|EEU84857.1| exonuclease rexA [Enterococcus faecalis CH188]
 gi|315577474|gb|EFU89665.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0630]
          Length = 1264

 Score =  358 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 159/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGTEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASLYYRKKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I   T P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L++S   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQESTHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|312903646|ref|ZP_07762822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635]
 gi|310632999|gb|EFQ16282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635]
          Length = 1264

 Score =  358 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 159/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGTEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASLYYRKKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I   T P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSTQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L++S   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQESTHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|70726984|ref|YP_253898.1| hypothetical protein SH1983 [Staphylococcus haemolyticus JCSC1435]
 gi|123659798|sp|Q4L4Y3|ADDA_STAHJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|68447708|dbj|BAE05292.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 1225

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 154/953 (16%), Positives = 319/953 (33%), Gaps = 134/953 (14%)

Query: 87   QEINKKSPDLKEKLKK--SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            ++       L  ++K       +  ++      ++       + + K +   + E K+  
Sbjct: 307  KDFFDDYKKLLSEVKNKYLMRSYEDLKVDMK--RLAPRIQYLVQIVKDIINGFAEKKRSR 364

Query: 145  CVLDFEDLIINTNDLLKKRDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
             VLDF D       +L  ++  ++ I  +   +   IL+DE QDT+ +Q  +I  +    
Sbjct: 365  NVLDFSDYEHFALQILTDQEGNASPIAKEYRSQFEEILVDEYQDTNQVQEAIISKIKR-- 422

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                    S   LF VGD KQSIY F  A+P   + +     K    +G     I+L  +
Sbjct: 423  -----GDESNGNLFMVGDVKQSIYKFRQADPTLFMDKYHRFTKDGDQSGL---RIDLSKN 474

Query: 264  FRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSR-IGQVGTVQLWEQVVSQHDS 320
            FRS  ++L   + +F     E    +  D+   +   +++   +   ++L   +  +   
Sbjct: 475  FRSRKEVLATTNYLFDHMMDEEVGEIEYDADARLYFGATKYSDKSMPLELHALIQDKSSD 534

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILV 378
                +                +   AR IA  +  +I    ++       R    KDI++
Sbjct: 535  NDLEK----------------SEQEARYIAEQVKYIIEHKQVYDMKSETYRQATFKDIVI 578

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            L R  K+        + +  DY I    N +    +   ++ +++  R + +   D+  V
Sbjct: 579  LERGLKNARN----LQQVFKDYNIPFHVNSKEGYFEQTEVRLVLSFLRTVDNPLQDIYLV 634

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELI 492
             +++S ++ F+ED++  I  Q    +  Y+ I  +            K +H +  I+   
Sbjct: 635  GLMRSVIYQFTEDELANIRVQSMNDDYFYQSILHYMKDQEANPLLVEKLEHFMDDINMYQ 694

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELI 551
              +Q    +             Q F    G +     L    N  +  E +S+  L + I
Sbjct: 695  EYSQSHPVYQLIDKFYNDHYVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLYQFI 754

Query: 552  SELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
              +++     K     N      N VR+MTVH++KGLE P V   +           K +
Sbjct: 755  RFIDELIERNKDFGEENVIGPNDNVVRMMTVHSSKGLEFPYVIYSELSKNFNKGDLRKPL 814

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
             +                    +     +    +K    E  RL+YV +TRA +QLI+  
Sbjct: 815  ILNQKYGLGIDYFDLEQNVTYPSLSSVVIKSITEKELISEEMRLMYVALTRAKEQLILIG 874

Query: 667  HSNTSNE-----------------KKSNQRTWYDMV------YDSFHNDERVKKIKLTNS 703
              +                     K+ +    +D++      Y S       +  K  ++
Sbjct: 875  TIDKEEALEKLERLPISGNQIALHKRLSADRPFDLIYSILAKYQSTSLLPEYRFEKSIDN 934

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQ----------------LMDEQKIPKKLFSPI 747
            +++      +      E   +E  E+ ++                L  +         P 
Sbjct: 935  LDESLRPTVDIKIAQFEELSIEDSESEQESRNISDLEVEGSHDDTLKQQINDQLSFKYPY 994

Query: 748  KNDINEPYILNPSTI-----------------------DTKGKTNLESLLSDNQTFNRGL 784
              D  +P   + S +                        T  +          +    G 
Sbjct: 995  LKDTEKPSKQSVSELKRQLETEESGTSYERVRQYRIGVSTYERPKFLRENKKRKANEIGT 1054

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA- 840
            ++H ++Q +        +  +  Y  +     +      K++   ++   + + +  T  
Sbjct: 1055 LMHTVMQHLPFKETRMTETELNDYINELIEKHIIEEDAKKDIQFEAVMNFIRSDLYMTIT 1114

Query: 841  MSCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHV 889
             +   Y E+          ++    +D+ II G ID I +     +  +YKT        
Sbjct: 1115 QADKVYRELPFVVNQARVDEMPESDEDVSIIQGMIDLIFLKDDQYYFVDYKTDAFNKRRG 1174

Query: 890  PQEIE---HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
              + E    +   +  Q+  Y+  L+    +K +   L +    +   I ++ 
Sbjct: 1175 MTDEEVGIQLRDKYKIQMKYYKNTLETILNSK-VYGYLYFFQFGQ-MSIEEDV 1225


>gi|227890027|ref|ZP_04007832.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
            johnsonii ATCC 33200]
 gi|227849471|gb|EEJ59557.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
            johnsonii ATCC 33200]
          Length = 1204

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 162/985 (16%), Positives = 308/985 (31%), Gaps = 130/985 (13%)

Query: 50   AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----------DLKEK 99
            A  L+Q          ++ + +  +  KF        +   +             DL ++
Sbjct: 252  ASRLEQLLNALEDNHAYNEIRANLMNCKFEKNIRKSKKWSEESLETYQESQKLKSDLNDQ 311

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK---YLNAHYEEAKKKNCVLDFEDLIINT 156
            LKK    F  + ++     + KS     T+      L   + + K++  ++D+ D+    
Sbjct: 312  LKKIFANFFVVEEKEQVNILKKSEKIVKTIVDTEKKLIKRFGQLKREQNLIDYSDMEQFA 371

Query: 157  NDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              +L     +A I +    ++ N ILIDE QD + +Q  +I ++                
Sbjct: 372  FSILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIAAI---------KKKGQNN 422

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            LF VGD KQSIY F  A P   L +                 I L  +FRST  +   V+
Sbjct: 423  LFMVGDIKQSIYGFRQARPDLFLSKYHAY-----GQNDDSEKIILSDNFRSTKRVTKTVN 477

Query: 276  KVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             +F+     N  G+       ++  ++          +   +          ++   + F
Sbjct: 478  SLFNPILTANFGGIDYKKEGQLQFGATY---------YPADLPTASEYIFTDKKQTQASF 528

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLIT 390
            +    +       + +   I  +   +    + K   KR ++  DI ++ R R D     
Sbjct: 529  EKNFGDEMDFSEIQMVIARIKQLKEENFQVWDRKTQLKRPLEYSDIAIITRTRSD----N 584

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                       + +   D         +  +M   R I + + D+  V +L+SPLFNF E
Sbjct: 585  LQVMQEFAKADLPLFVTDAQNYFQTFELVMIMNYLRLIDNPQQDIPLVAVLRSPLFNFKE 644

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGI--SKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
             ++ +I  +              +       K ++ ++ +  L   A      +    I 
Sbjct: 645  PELVQIRVKTRSGNFYNALTNFASVNSDLGQKCKNFLQQLESLRSFAATHRISELIWSIY 704

Query: 509  GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIK 562
                  +       G +    L+         E   +  L + IS +E+           
Sbjct: 705  ERTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFIERMRKNQKDLAQP 764

Query: 563  RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N V++MT+H +KGLE PVVF++  G +  +        I     D  G+ I  
Sbjct: 765  LLSDKADNAVKLMTIHASKGLEFPVVFVMGLGHKYQTRDLSGNFTI---SKDGLGLTIKE 821

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
               +  + + S      ++   EE  R+LYVG+TRA  +LI+    +    K+    +  
Sbjct: 822  KDYRIDSLVKSLADVEKRQQMLEEEARILYVGLTRAQQKLILVASVSEMETKQKKWESEI 881

Query: 683  DM-----------------------VYDSFHNDERVKKIKLTNSINK----------DEW 709
            D                        +      D+ ++ + L                 + 
Sbjct: 882  DQKTNILPLIRKINAQSPLDFLGPKLEQKHEFDQTIEDMTLALEEQDKIYYLKFAVQSDI 941

Query: 710  IAYEWSTHHPE----------------NTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
               +      +                  P              +I K    P+  ++  
Sbjct: 942  EEKDEQKDDTQKLSSKMNDVVKTLYNFEYPFADATKTTAYQSVSEIKKVFNDPMDTELEN 1001

Query: 754  PYILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSY 808
              +++ S   +    +T +            G  +H +LQ         E   +  I   
Sbjct: 1002 SRLISSSNRYLQPIDETPVFLEKQKFTGAEIGTAMHLVLQYYDYQGDKTELNLEQEIEEL 1061

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKIN 856
                          +L                        + E   S            +
Sbjct: 1062 VEL--GKLNPLMVPHLSKEALNWFVMSEFAAEFWQKPEKLHRESQFSSLVNASELFNDFS 1119

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILK 912
                 I++ G ID    + + + +F+YKT        E     I   +  QL +YE+ L 
Sbjct: 1120 DSAAKILVHGTIDGYFETDEGLILFDYKTDFVDKTHEEQAIDKIKQKYTGQLRLYEQALN 1179

Query: 913  DSYPNKSL-VCLLIYVSEPKVFIIP 936
            +   NK +    LI +   KV  + 
Sbjct: 1180 EISENKKVIGKYLILLDARKVVPVD 1204


>gi|42519128|ref|NP_965058.1| hypothetical protein LJ1203 [Lactobacillus johnsonii NCC 533]
 gi|81667805|sp|Q74JA6|ADDA_LACJO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|41583415|gb|AAS09024.1| hypothetical protein LJ_1203 [Lactobacillus johnsonii NCC 533]
          Length = 1204

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 160/983 (16%), Positives = 307/983 (31%), Gaps = 130/983 (13%)

Query: 52   TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----------DLKEKLK 101
             L+Q       +  ++ + +  +  KF        +   +             DL ++LK
Sbjct: 254  RLEQFLNALEDDHSYNEIRASLMNCKFEKNIRKSKKWSEESLETYQESQKLKSDLNDQLK 313

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLAKY---LNAHYEEAKKKNCVLDFEDLIINTND 158
            K    F  + ++     + KS     T+      L   + + K++  ++D+ D+      
Sbjct: 314  KIFANFFVVEEKEQVNILKKSEKLVKTIVDAEKKLIKRFGQLKREQNLIDYSDMEQFAFS 373

Query: 159  LLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            +L     +A I +    ++ N ILIDE QD + +Q  +I ++                LF
Sbjct: 374  ILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIAAI---------KKKGQNNLF 424

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGD KQSIY F  A P   L +                 I L  +FRST  +   V+ +
Sbjct: 425  MVGDIKQSIYGFRQARPDLFLSKYHAY-----GQNDDSEKIVLSDNFRSTQRVTKTVNSL 479

Query: 278  FSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            F+     N  G+       ++  ++          +   +          ++   + F+ 
Sbjct: 480  FNPILTANFGGIDYKKEGQLQFGATY---------YPTDLPTASEYIFTDKKQTQASFEE 530

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFL 392
               +       + +   I  +   +    + K   KR ++  DI ++ R R D       
Sbjct: 531  NFGDEMDFSEIQMVIARIKQLKEENFQVWDRKTQLKRPLEYSDIAIITRTRSD----NLQ 586

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                     + +   D         +  +M   R I + + D+  V +L+SPLFNF E +
Sbjct: 587  VMQEFAKADLPLFVTDAQNYFQTFELVMIMNYLRLIDNPQQDIPLVAVLRSPLFNFKEPE 646

Query: 453  IFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            + +I  +                 +    K ++ ++ +  L   A      +    I   
Sbjct: 647  LAQIRVKTRSGNFYNALTSFASVNSDLGQKCKNFLQQLESLRSFAATHRISELIWSIYER 706

Query: 511  KKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRA 564
                +       G +    L+         E   +  L + IS +E+             
Sbjct: 707  THLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFIERMRKNQKDLAQPLL 766

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                   V++MT+H +KGLE PVVF++  G +  +        I     D  G+ I    
Sbjct: 767  SDKADKAVKLMTIHASKGLEFPVVFVMGLGHKYQTRDLSGNFTI---SKDGLGLTIKEKD 823

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
             +  + + S      ++   EE  R+LYVG+TRA  +LI+    +    K+    +  D 
Sbjct: 824  YRIDSLVKSLADVEKRQQMLEEEARILYVGLTRAQQKLILVASVSEMEAKQKKWESEIDQ 883

Query: 685  -----------------------VYDSFHNDERVKKIKLTNSINK----------DEWIA 711
                                   +      D+ ++ + L                 +   
Sbjct: 884  KTNILPLIRKINAQSPLDFLGPKLEQKHEFDQTIEDMTLALEEQDKIYYLKFAVQSDIEE 943

Query: 712  YEWSTHHPE----------------NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             +      +                  P              +I K    P+  ++    
Sbjct: 944  KDEQKDDTQKLSSKMNDVVKTLYNFEYPFADATKTTAYQSVSEIKKVFNDPMDTELENSR 1003

Query: 756  ILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCT 810
            +++ S   +    +T +            G  +H +LQ         E   +  I     
Sbjct: 1004 LISSSNRYLQPIDETPVFLEKQKFTGAEIGTAMHLVLQYYDYQGDKTEINLEQEIEELVE 1063

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINCP 858
                        +L                        + E   S            +  
Sbjct: 1064 L--GKLNPLMVPHLSKEALNWFVMSEFAAEFWQKPEKLHRESQFSSLVNASELFNDFSDS 1121

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDS 914
               I++ G ID    + + + +F+YKT        E     I   +  QL +YE+ L + 
Sbjct: 1122 AAKILVHGTIDGYFETDEGLILFDYKTDFVDKTHEEQAIDKIKKKYTGQLRLYEQALNEI 1181

Query: 915  YPNKSL-VCLLIYVSEPKVFIIP 936
              NK +    LI +   KV  + 
Sbjct: 1182 SENKKVIGKYLILLDARKVVPVD 1204


>gi|225026995|ref|ZP_03716187.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353]
 gi|224955680|gb|EEG36889.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353]
          Length = 1221

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 172/1030 (16%), Positives = 322/1030 (31%), Gaps = 151/1030 (14%)

Query: 18   KDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL-- 74
            K+L          +         E     +   ++ ++  SQT+  +  + +LS   +  
Sbjct: 221  KELLQEKEALSKLLKNIAGEEVPEKYGVLLQDVSEYVEALSQTESYDAYYMVLSRGPVPA 280

Query: 75   -----TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                  +        I +E +++  +L +K K++         +     ++      + L
Sbjct: 281  FPRATKKDKEWADYEIVKEWHQEVKELLQKQKETVFTAPAEELQREAAGIYPLLEEYIVL 340

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR------DVSAWIRYKIDQEINHILID 183
            A+     Y   KK+  V DF+DL     +LL            +     + ++   I +D
Sbjct: 341  AQRFEEIYLAYKKEKNVYDFDDLEHFALELLVDHYDEGGQAYPSETAKTLAKKYKMIFVD 400

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT+L+Q  ++  L+E             TLF VGD KQSIY F  A P   LR    
Sbjct: 401  EYQDTNLVQETILEMLSEK---------DNNTLFTVGDVKQSIYRFRQARPDLFLRRNEK 451

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                  +  ++   IEL  +FRS   +L   + VFS          D        + R G
Sbjct: 452  Y-----HNEEEGVSIELRDNFRSAPGVLCFTNYVFSRLMERDFGGVDYNEET---ALRAG 503

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS-ILARRIAYTISNMIGTDTI 362
            + G +          D + +           +L +           I   I  +I     
Sbjct: 504  EGGPM--------LEDKETSELLFFVKDSVQTLEEAPEDVLTETALITKRIQELIEEG-- 553

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                        DI++L+R                    I V   ++        I  ++
Sbjct: 554  --------YHYGDIVILLRS---GAGRMEPMAEFLEKNGIPVSCENKTGYFHTREITIIL 602

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC----TQRHETETVYEYIQKFANCGI 478
                 + +   D+    ++ S +  F+E+++ K+         E  T+Y+ +  +   G 
Sbjct: 603  NYLSVVDNVYQDIPMASVMLSSIGGFTEEELTKLRILVREPMREQYTLYDLMCLYLQEGA 662

Query: 479  S-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEF 532
                  K QH  K +       +          I           +   G +  + L   
Sbjct: 663  EEELRAKIQHFYKDLQYFREQKKEQPLGVLLWDIYQRTGFYYDVQLMPDGAKRKENLLML 722

Query: 533  LNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L      E+  +  L      +EQ            + + N N V+IMT+H +KGLE PV
Sbjct: 723  LKKAEDYEKTVFKGLFYFNRYMEQLKSYEIELGEAGSGTENENVVKIMTIHKSKGLEFPV 782

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            VF+     +       K M   P L           +    + +   + + + K T EE 
Sbjct: 783  VFVSGLSKKFNRMDLTKPMLCHPELGIGMECVNITLRFHHPSLMKRAIQEKVWKDTLEEE 842

Query: 648  NRLLYVGMTRASDQLIICKHSNTSN----------EKKSNQRTWYDMVYDSFHNDERVKK 697
             R+LYV MTRA  +LI+       +           +K    +  D +     +  R  +
Sbjct: 843  MRILYVAMTRAKRKLILTGIIKAQDLEAGLRLQINTQKWRATSAMDWLLPILADQFRSTQ 902

Query: 698  IKLTNSIN-----------------KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
             + +                        W+              E+E   K+    Q   
Sbjct: 903  SEKSEEREGFLKNQETQKQAHSEGVTASWLKARLVNWEEILPFFEKERKQKEEFSYQIFM 962

Query: 741  K---------------KLFSPIKNDINEPYILNPSTIDTKGKTNLESLL----------- 774
                                P ++        + S + T  +T L               
Sbjct: 963  DTVVIPADVSMVEQSFSYEYPNRDATKWKRKYSVSELKTLSQTTLPEEESSIMLPEQNNF 1022

Query: 775  --------------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
                          S+     RG IIHK+++++       +K     +       +P  E
Sbjct: 1023 EEEVKMPEFLKEEKSEIAATARGTIIHKIMELLPFGQIQTKKQLFE-WIDALKGTYPESE 1081

Query: 821  ---YKNLLLSITRLLENPMMTTA----MSCDSYSEVSVSGKINC--------PKKDIIIS 865
                K L  +I   L + +           +   E+  +  +           +  +++ 
Sbjct: 1082 KISAKWLYRAIEAFLFSEIGEKLSQMDRQGNLRKELPFTVGLPVSLMNADTQAEDTVVVQ 1141

Query: 866  GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            G ID    +++++++ +YKT      E   +   +  Q+  Y+  L+     +     L 
Sbjct: 1142 GIIDICGEAEESLWLIDYKTDRIKEGEESLLLDRYGNQMLYYKAALEQILGKRVSESYLY 1201

Query: 926  YVSEPKVFII 935
              S  K   +
Sbjct: 1202 SFSLKKFIPV 1211


>gi|229918202|ref|YP_002886848.1| recombination helicase AddA [Exiguobacterium sp. AT1b]
 gi|229469631|gb|ACQ71403.1| recombination helicase AddA [Exiguobacterium sp. AT1b]
          Length = 1205

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 166/1041 (15%), Positives = 343/1041 (32%), Gaps = 147/1041 (14%)

Query: 5    FGLSLNESYELIY--KDLWPLPYFQVSDINKYVSLSMETG-NPTILKKAQTLQQASQTQC 61
            FG   +E   LI   + LW      V D+ K  +     G  P      Q +    Q + 
Sbjct: 201  FGEDPDEEAILIEFGQMLWHDIEKAVRDLRKLEAELRVAGYEPQSENIRQAIFPFEQLEG 260

Query: 62   IEERFSLLSSF-----FLTQKFTPQKN-------IITQEINKKSPDLKEKLKKSQDEFIK 109
                +S L +      F T K  P+K        ++    ++    L   +++++     
Sbjct: 261  ETIVWSELETAARAMKFGTMKAVPKKEEHQIYHEVLKPAYDQAKKKLTAAVEQARVSGAD 320

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            + +  +  +        +   +     YE+AK+    +DF DL      +L++    + +
Sbjct: 321  LLESVSMQQ--PLVETLVRTVRAFGQAYEQAKRDRAFVDFSDLEHYALAILRQDGGPSDV 378

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                 +    +L+DE QDT+ IQ  +I  +  +             LF VGD KQSIY F
Sbjct: 379  AALYKERFAEVLVDEYQDTNEIQETIINLVANE-------REEIGNLFMVGDIKQSIYRF 431

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
              AEP   + +    ++  T        I+L  +FRS +++L  ++ +F    + +    
Sbjct: 432  RHAEPGLFIDKATRFRQANTG-----KRIDLSQNFRSRSEVLYGINDLFVQLMDEEVGEI 486

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                  +    R                 + +  P    +     +  + S   +  R I
Sbjct: 487  AYDEAAQLVPGR-----------------EYEPIPADPEFILVDGASRELSKQEVEGRAI 529

Query: 350  AYTISNMIGTDTIF-----SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A  I  ++  D  F     S G+ R  + +DI++LVR +K+          +   Y I  
Sbjct: 530  ATRILELVSGDEPFKVTDESTGQLRNCEYRDIVILVRSKKERV---EQLMDILTQYNIPA 586

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +          I+ ++AL + I +   D+     L+SP+F F + ++ +I  +    +
Sbjct: 587  YTDSDGGYFQATEIRMILALLKVIDNPLQDIPLAGALRSPMFRFDDGELARI--RLESED 644

Query: 465  TVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520
            + YE ++  A+       K   ++  +      A+  S  +    +              
Sbjct: 645  SFYEALKAKADDDDELGVKCGEMLDRLSRWRTYARNHSLSELIQQLFNDTGFYDFSGGLP 704

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575
             G    + L    +  L  E++ Y  L   +  +++        +  R+     N VRIM
Sbjct: 705  GGKGRQENLKALYDRALAYERSGYRGLYRFLRVMDRLQDTGEDLSEARSLGDEENVVRIM 764

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            TVH +KGLE PV  +   G Q      ++++               + ++KS   +   +
Sbjct: 765  TVHKSKGLEFPVTIVAQLGKQFNKRDQMQRVIFHKQYGISLDAIDVVTRTKSETFVKEMI 824

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT------------------SNEKKSN 677
             + L  + + E  R+LYV +TRA ++LI+                        ++E +  
Sbjct: 825  RRDLDATMKAEEMRVLYVALTRAKEKLILVGTVGEPLKHLQQWLQVGQSGDLLASEARRE 884

Query: 678  QRTWYDMVYDSFHNDE----------------------------RVKKIKLTNSINKDEW 709
             +T+ D +  +                                     +    ++ +   
Sbjct: 885  AKTYLDWIAPALLRLPSATSFIESFGFTVPSTFQESTSWIYRVIGEADLAEIATLQEMMA 944

Query: 710  IAYEWSTHHPENTPLEREETI-----KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
              +        + P++ EE       + L  E      + +  K  + E           
Sbjct: 945  QLHHVQRFEAIDFPIQNEEETIRAVKRALTYEYPARDAVRTAAKQTVTELKRAMQLEQAA 1004

Query: 765  KGKTNLE---------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
                                      RG  +H + Q+    P     + I  +  +    
Sbjct: 1005 FEDPVRPIDTPYREPKWRQVKQTGAERGTTLHLIFQLAD--PNQPIVDQINQWEMQGMLS 1062

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTAMSC----DSYSEVSVSGKINCP---------KKD 861
                E   L +  I    +  +            ++ E+  +  +             + 
Sbjct: 1063 PVEAETARLAIPDIEMFFQTEVGQALADALERGTAWRELPFTYTVPAERVNPDGHFTDEH 1122

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSY 915
            ++I G ID +     +  + +YK+              E +   +  QL +Y + ++  +
Sbjct: 1123 VLIQGIIDCLYFDGDSYVLLDYKSDAVTHLSDSREDAHERLRERYAIQLQLYREAIETIW 1182

Query: 916  PNKSLVCLLIYVSEPKVFIIP 936
              +    L+  +    +  + 
Sbjct: 1183 NIRVERTLIYSLDLQGIVTVS 1203


>gi|160934431|ref|ZP_02081818.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753]
 gi|156867104|gb|EDO60476.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753]
          Length = 1179

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 149/988 (15%), Positives = 326/988 (32%), Gaps = 107/988 (10%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
                     V + ++ +S +        L   + L+    ++      + + +F   +  
Sbjct: 227  AALTQNSLSVMEDDEKISAAYREAFLEDLSSLEELRDRIVSKDWNRIAAGVRAFGFAKLK 286

Query: 79   TPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
              +        +           + +KL     E  + + R +  ++           K 
Sbjct: 287  ALRGYRDDPLKLRIAGSRDTVKSVFKKLASLFQE-DEEKCRQDIRRLVPVVSELFGAVKR 345

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDT 188
             +   +E K++  + DF DL      LL ++    W R +    + +  + +++DE QDT
Sbjct: 346  FSRRLDEKKQQKRLADFGDLEHWALRLLVRQTEEGWRRTEDARLLAESFDEVMVDEYQDT 405

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            +  Q  + R+++ +           + LF VGD KQSIY F  A P+  LR K       
Sbjct: 406  NEAQDMIFRAISRE----------EKNLFMVGDVKQSIYRFRQAMPEIFLRRKASYPDYD 455

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                +  + + L  +FRS   +   V+ VF    + +    + T             G  
Sbjct: 456  PEKNEYSAKVNLDRNFRSRHGVTDGVNFVFRQLMSVEMGEMEYT-------------GEE 502

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-SNGK 367
            +L          + + +    T    +       ++ A  I   I++M+    +    GK
Sbjct: 503  ELTPGASYPEREEADTELHILTLPKGA----DMDTLEAEYIGSLIASMVRNGELVQDGGK 558

Query: 368  KRVIQAKDILVLVR-KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            +R    +D  VL+R       +     R +     I    +          +   ++  R
Sbjct: 559  QRPAAYRDFCVLIRNANAHGGVYAAKLREM----GIPAWSDTAGTFFGTPEVSVALSYLR 614

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--ISKFQHV 484
             + +   D+  + +L SP++ F+ DD+ +I   R      +             ++    
Sbjct: 615  VLDNPVQDIPLLSVLISPIWGFTPDDLAQIRMARKGDAFYFALKDAAERPDVLGARCHRF 674

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRFGNEVIDVLDEFLNFTLRNEQNS 543
            +++      +A           +  A          R G+  ++ L   + +    E + 
Sbjct: 675  LEHTEAFRRLAATLPADRLIQRLYEATGYPAVAQAMRQGDLRLNNLRLLMKYARDYEGSG 734

Query: 544  YSSLQELISELEQYPPTIKR-----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            Y  L   I  +++            A S + N VR+M++H +KGLE P+  L +T  Q  
Sbjct: 735  YQGLSGFIRFIDRLQEQDSDLAPAAALSESANVVRVMSIHKSKGLEFPICILANTARQFN 794

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              K  + + + P+L     +       +        +   +++    E  R+LYV MTRA
Sbjct: 795  --KRREDILLHPALGLGMKLRDETMTVQYDTMPREAVSLEIERGGMSEELRVLYVAMTRA 852

Query: 659  SDQLIICKHSNTSNEKK------------------SNQRTWYDMVYDSFHNDERVKKIKL 700
             ++L++    +   +                     +  ++ D +            ++ 
Sbjct: 853  KEKLVMLTSLDDPVKTLGKLGAQLTDSKAISPYVVRSAGSFSDWILSCALRHPSGGGLRE 912

Query: 701  TNSI-------NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK------KLFSPI 747
               +         + W          + T     E  +Q+  + ++            P 
Sbjct: 913  KAGVLPGVMLTEGENWKILLNPVREQQETVSGETEKRRQIQADPELTALLQKRFSFVYPG 972

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDN--------QTFNRGLIIHKLLQVIFTLPEH 799
            +   + P  +  S +  K      + +S              RG  +H  +Q        
Sbjct: 973  EALKSVPAKVAASELAGKENAKEYAAMSRPAFLTGQTMTPAERGTALHLYMQFADYRLAK 1032

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEVSVSGKINCP 858
            +       +  +   L   +     L  I R  ++ +      S +   E+  + ++   
Sbjct: 1033 QDPEKQLRFLLEKGFLTQEQAEAVSLKKIERFFQSGLYRRMEQSENLRREIRFTVELAAS 1092

Query: 859  K-----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            +           + +++ G +D +      + + +YKT +   +E + +   +  QLS+Y
Sbjct: 1093 EVNPGLTGQNGREPVVLQGAVDCVFEENGGLILVDYKTDYV--KEEQELKNRYCRQLSLY 1150

Query: 908  EKILKDSYPNKSLVCLLIYVSEPKVFII 935
               L+ +   K     L   S  +   I
Sbjct: 1151 ALALEQTTGLKVTEQYLYSFSLGEAVRI 1178


>gi|306829519|ref|ZP_07462709.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249]
 gi|304428605|gb|EFM31695.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249]
          Length = 1217

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 160/1026 (15%), Positives = 338/1026 (32%), Gaps = 140/1026 (13%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQCIEER 65
            +  ++  E I + LW L  F    ++         T    +      +   +Q    +  
Sbjct: 233  IEKDKLTEQIKQALWDLESFLRYHLDNDAKEFPKATYLEAVQDVLDQIASLNQESDSKAY 292

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFK 121
             ++L+      K    + +           L +   + +     +  ++ D+       +
Sbjct: 293  HAVLTRVVAISKEKNGRALANSSRKADLKPLSDAYNEERKAQFAKLGQLSDQITILDYQE 352

Query: 122  S-TLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                 +  LAK            Y E K++    +F D+   T ++L+       +R   
Sbjct: 353  RYHGDTWDLAKTFKNFMSDFVEAYRERKRQENAFEFADISHFTIEILENFP---QVREAY 409

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             +  + +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 410  QERFHEVMVDEYQDTNHIQERMLEFL-----------SNDHNRFMVGDIKQSIYRFRQAD 458

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+    + +   +      ++  +I L  +FRS +++L+  + VF    + +    +  +
Sbjct: 459  PQIFNEKFQRYAQ----NPKEGKLILLKENFRSNSEVLSATNDVFERLMDQELGEINYDS 514

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +   +       ++   + +         ++E           E   +   R +   I
Sbjct: 515  MHQLVFANTKLTPNLENKAEFLLYDKDDSGQEEE-------ESQTEIKLTGEMRLVIKEI 567

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  K+I +L   R              ++Y I V  +      
Sbjct: 568  LKLHQE---------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNY 614

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
               L ++ ++   R I +   D + V ++KSP+F+F ED++ ++  Q+ E +      +K
Sbjct: 615  LQSLEVQVMLDTLRVIHNPLQDYALVALMKSPMFDFDEDELARLSLQKAEDKIQENLYEK 674

Query: 473  FANCGI--------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF- 517
              N                  K    +  ++     A+  S +D    I   +       
Sbjct: 675  LLNAQKQATSQKNLIYTALAEKLNQFMDILNYWRLYAKTHSLYDLIWKIYNDRFYYDYVG 734

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVR 573
                G      L        + E++++  L   I  ++Q           A +   + V 
Sbjct: 735  AFPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVE 794

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            +MT+H +KGLE P VF+++          +  + +             +       +   
Sbjct: 795  LMTIHKSKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVEAHYPK 854

Query: 634  DLI------------KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN--------- 672
             +             K L+ ++  E  RLLYV MTRA  +L +    +            
Sbjct: 855  TIKLSIPSLTYIQNEKELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAA 914

Query: 673  -----------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
                       + K+ Q   + +      ++       L       E I    +    ++
Sbjct: 915  ENGKLDKHTRLQAKNFQDWVWAIPKVFSKDNLNFSYCFLGEDQLTREAIGELENKSPLQD 974

Query: 722  ---TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------- 768
                   + ETIK+ ++  K  +   S  +  I  P +  PS I    +           
Sbjct: 975  SSQADNRQSETIKEALEMLKEVEVYNSLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIA 1034

Query: 769  --------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                             S          G   H+L+Q I    +      +T    +   
Sbjct: 1035 NQTQSPEKPISFDLPDFSTKEKVTGAEIGSATHELMQRIDLNQQPTL-TSLTETLKQ--V 1091

Query: 815  LWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRID 869
                     + L  I    +  +    ++     Y E   S   +    ++D ++ G +D
Sbjct: 1092 QTSPAVRDKINLSKILAFFDTALGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILD 1151

Query: 870  QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
               +    I +F+YKT  +   E   +   +  QL++Y + L  +Y  +++   LI + +
Sbjct: 1152 GYLLYGDRIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYLILLGK 1209

Query: 930  PKVFII 935
             +V ++
Sbjct: 1210 DEVQVV 1215


>gi|322804717|emb|CBZ02269.1| ATP-dependent nuclease, subunit A [Clostridium botulinum H04402
           065]
          Length = 945

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 155/944 (16%), Positives = 311/944 (32%), Gaps = 150/944 (15%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEIN 178
            A   L    +  YE  K++  ++DF D+      +L         + + I     ++  
Sbjct: 2   KALSNLVILFDKKYEAKKRERDLIDFNDIEHLCLSILTDKNSDGHIIPSDIALNYRKKFA 61

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS------------------SPRTLFAVG 220
            +LIDE QD++L+Q  ++  ++         +                        F VG
Sbjct: 62  EVLIDEYQDSNLVQEVIMSMVSRVKGYWSFYNGQLIFNEEEISLEEPQIGLDIPNRFMVG 121

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D KQSIY F  A+P+  L +            +K   ++L  +FRS  +++  V+ +F  
Sbjct: 122 DVKQSIYRFRQAKPEIFLDKYNEY---NEEEDRKNRKVKLFKNFRSREEVINGVNYLFKQ 178

Query: 281 PENA--QGLSEDSTTTIRHRSSRIG--QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
             +     L       ++  +S     +   ++L         S+   ++ +        
Sbjct: 179 IMSKTIGELDYTEEEALKIGASYGEEVKGEPIELCLMDKKYEISEEVLKEYNVDEEEALD 238

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLT 393
             +    + A++I   + N +       +   G+ R +Q +DI++L+R   +   +    
Sbjct: 239 NIQLEGRLAAKKIQKLVGNNLEGGLKVFDKKLGEYRNLQYRDIVILMRATSNWAPV---F 295

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   I V  +      D   IK +++L + I +   D+  + +L+SP+ +F++D++
Sbjct: 296 VEELAKEGIPVFADTNSGYFDTAEIKTMISLLQIIDNPLQDIPLLSVLRSPIASFTDDEL 355

Query: 454 FKIC------------------TQRHETETVYEYIQKFANCGISKFQH-----------V 484
             I                    +  + ++ Y +  +  N      +             
Sbjct: 356 IDIRMVNKNITFYECMEIIYRLYKNEKLDSYYSFYIEDENKINKIIKDMNEKLKNKICSF 415

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543
           I+ +      +      +F   +           + + G +    L        +  + S
Sbjct: 416 IEKLKLWREKSIHIDIDEFIWFLYVETGYYGYAGALQAGEQRQANLRILFQRAKQYAKTS 475

Query: 544 YSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           Y  L   I+ +             +    N N VRIM++H +KGLE PVV L  TG    
Sbjct: 476 YKGLFNFINFINKLKFSSGDMGSAKILGENENVVRIMSIHKSKGLEFPVVILSGTGKNFN 535

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                K +     L   P       +    + + + +   ++  T  E  R+LYV +TRA
Sbjct: 536 MTDLNKNILFHRDLGYGPDYVDTERRIAYPSLVKNIIKNKIRLETLSEEMRILYVALTRA 595

Query: 659 SDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERVKKIKL 700
            ++LII    N  ++   +                   +T+ D +  +    +     + 
Sbjct: 596 REKLIITGLINNMDKTVEDWLNLSEDKNKVPEYAVMSGKTYLDWIGPALIKHKDAVSFRE 655

Query: 701 TN---------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                        +K +W    W+        +E +E       ++ +     S  K +I
Sbjct: 656 ELKMTSELSNIVDDKSKWKIELWNKRELLKEKVEEDEVEISEKIKETLMNLEESNYKEEI 715

Query: 752 --------------NEPYILNPSTID------------------TKGKTNLESLLSDNQT 779
                         + P  L+ S +                      K            
Sbjct: 716 YKRLSFKYKYDNASSIPTKLSVSDVKKQFILDEKENTEELFKKLELRKPMFMEEKKKISP 775

Query: 780 FNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
             RG IIH  +Q +       E   K  I     +    +   +  N    I +     +
Sbjct: 776 SERGTIIHLFMQHLDLKKAENEEDIKEQINRLIEREFITYEQSKVINPYK-ILKFCRGEL 834

Query: 837 MTTAM-SCDSYSEVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEY 883
               + S +   E+  S +I                + +II G ID     +  + + +Y
Sbjct: 835 GKRILNSNNVNKEMPFSIEIPALEIYKELDKEIYKDEKLIIQGVIDCYFEEEDGLVLLDY 894

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           KT +    +IE I   +  Q+  YE+ L      K++    +Y+
Sbjct: 895 KTDYV--NDIEEIKNRYEIQIKYYEEALNRI-TGKNVKDKYLYL 935


>gi|167771642|ref|ZP_02443695.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM
            17241]
 gi|167666282|gb|EDS10412.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM
            17241]
          Length = 1174

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 149/957 (15%), Positives = 300/957 (31%), Gaps = 95/957 (9%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ---- 87
            ++ V  +        L + +    A   +  +     L  F   +    + +   +    
Sbjct: 241  DEAVQAAYGAALSGDLLQLEQTFAALTARDWDRVQERLRLFTFEKLRPLRGDSPQKSAVQ 300

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
             + K +  + E+L+  Q          +   +         L +  +  + E K++  ++
Sbjct: 301  ALRKSARAIVEELRDRQFCASSAEFLDDVAFLRPMVSLLFDLTRAFDRLFTEQKQQKYLM 360

Query: 148  DFEDLIINTNDLLKKRDVSAWIRYKIDQE----INHILIDEVQDTSLIQWEVIRSLTEDF 203
            DF D+      LL K+    + + ++ QE     + +LIDE QDT+  Q  + R+++++ 
Sbjct: 361  DFSDMEQYAISLLVKKAGPGYAKTELAQEAGALYDEVLIDEFQDTNAAQEIIFRAVSQN- 419

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                        LF VGD KQSIY F  A P+  + +K+       +     + I L  +
Sbjct: 420  ---------ESNLFMVGDVKQSIYRFRQAMPELFMEKKKRFAPY--DGKTFPAKIVLGKN 468

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            FRS   +   V+  FS   + +    D                         S  +    
Sbjct: 469  FRSAQAVTGCVNFFFSQLMSGEIGEVDYNQEEALSPG--------------ASFPEGIEA 514

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRK 382
                          +  S  + AR +A  I+ M+    + ++G   R ++  DI VL+R 
Sbjct: 515  GCTLRLIDASQYAGELDSTQLEARDVAEQIAGMLERGDLVADGGVTRRVRPSDICVLLRS 574

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                         L     + V    +        I  ++AL R + +   D+ F   L 
Sbjct: 575  PAQKA--QAYFDAL-TRRGVPVWAEPKSGFLTSREIAPVVALLRVLGNPTLDIDFASALL 631

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            SPLF  + D++ +I         +Y    K A  G  +  + +  I  L   A   +   
Sbjct: 632  SPLFGLTADELTQI-RLTDRRAPLYIAAAKAAEAGDPRAANAVDTIARLRRFASNATADA 690

Query: 503  FFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ----- 556
                I        +  + R G      L   + +        Y  L   I  +++     
Sbjct: 691  VIRRIYEECDYMGKVQAMRMGQARRANLLLLVQYACDYHAGGYKGLSGFIGFVDRLIDRG 750

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                   + S   + VR+M++H +KGLE PVVFL DT  +           +   L    
Sbjct: 751  GDFAPAASMSEQADVVRVMSIHRSKGLEFPVVFLCDTAKRFNREDLNGNTLLHSELGFAC 810

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--- 673
                +    +     +  L   L++S   E  R+LYV +TRA  +++I        E   
Sbjct: 811  VRRDFELMKQYTTVPMQALRLELERSMLSEELRVLYVALTRAKQRIVITGVVTKPEELLC 870

Query: 674  ---------------KKSNQRTWYDMVYDSFHNDER---------VKKIKLTNSINKDEW 709
                           +      + D +  +                        +  +  
Sbjct: 871  ALVSESGTDGKLPPHQVRGANAYLDWILMAAARHPALAERFGLAGAPLDASEAPLTFELK 930

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG--- 766
             A +      + +        +  ++  +       P +     P  +  S +       
Sbjct: 931  AAADGEPDAEKTSETTAASPDEAALEALRRRLAFRYPFEAQTKIPTKMAVSQLAGSAYAA 990

Query: 767  -----KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                                RG  +HK +Q        +  +   +   +   L   +  
Sbjct: 991  SYRFSARPAFLQGDGLTGAQRGNALHKFMQFADYQAAARDASGEIARMAREGFLSRQEAD 1050

Query: 822  KNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGK-----------INCPKKDIIISGRID 869
                  +     + +     S    + E+    +           +     +  I G  D
Sbjct: 1051 SIRPDRVRAFFSSRLAARIFSAKQVWRELRFLAEAGERELGAYSALFTNGGETAIQGVAD 1110

Query: 870  QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             + + +    + +YKT     +  + +   +  QL++Y   L ++     +   ++Y
Sbjct: 1111 CVFLEEDGAVVVDYKTDRV--KTPDELRERYRVQLALYRNALTEAL-GVPVKECVLY 1164


>gi|315174632|gb|EFU18649.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1346]
          Length = 1271

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 156/963 (16%), Positives = 302/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 317  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 377  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 437  L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 485  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 545  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 602  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 658  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 717  EKWREQARRNQLSNLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 777  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 837  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 897  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKVDEYQQEVV 956

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 957  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G +D    
Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIVDGYIE 1196

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1197 LDNQCILYDYKTDHVKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256

Query: 931  KVF 933
             + 
Sbjct: 1257 VII 1259


>gi|315030721|gb|EFT42653.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4000]
          Length = 1271

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 153/963 (15%), Positives = 299/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 317  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 376

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 377  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 436

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 437  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 484

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 485  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 544

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 545  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 601

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 602  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 657

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 658  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 716

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 717  EKWREQARRNQISNLLWTIYRETAYLDYIGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 776

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 777  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 836

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 837  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 896

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 897  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 956

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 957  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1016

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1017 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1076

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1077 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1136

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1137 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1196

Query: 874  SQQNIFIFEYKTHHHVPQEIE---HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     ++    I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1197 LDNQCILYDYKTDHVKGTSLQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1256

Query: 931  KVF 933
             + 
Sbjct: 1257 VII 1259


>gi|313472179|ref|ZP_07812671.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153]
 gi|313449090|gb|EEQ68552.2| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153]
          Length = 1173

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 159/1001 (15%), Positives = 321/1001 (32%), Gaps = 149/1001 (14%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            + + +  + I  D    P+ + +++ K +         +  K+    + + +    ++  
Sbjct: 220  IEMTDKVDKILAD----PFNEATELEKIM-----KDFLSFSKRLAQAETSLENGSFDQIR 270

Query: 67   SLLSSFFLTQKFTPQKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            + L     T+   P+K+    ++I  +   L +   + +++   +   F      + T  
Sbjct: 271  ASLQDCQFTEN--PRKSPKWDEDILDRYASLSQVRTELREQVKSLFAAFFVVDNEEQTAV 328

Query: 126  SLT---------LAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK-ID 174
                        LA+  L A +   K+K  +LD+ D+      +L     +  +  +   
Sbjct: 329  MKQSSMIIKAVCLAEKELIATFNSLKRKQNLLDYSDMEQLAYQILTSDTTAGHLARQFYQ 388

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +   IL+DE QD + +Q  +I+ +  +             LF VGD KQSIY F  A+P
Sbjct: 389  NKFTEILVDEYQDINKLQERIIQLMKCE----------HNNLFMVGDVKQSIYGFRQADP 438

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292
               L + +   +           I L  +FRST  +  +V+K+F+     +  G+   + 
Sbjct: 439  SLFLNKYQKFAED-----SSSKRIVLADNFRSTKPVTKIVNKLFNPLLTPDFGGIDYQNE 493

Query: 293  TTIRHRSSR--IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
              ++  +S          +L                           + S  S   + + 
Sbjct: 494  GQLKFGASYYPDNLPAASELLFYDK---------------------SEASDESNQIQLVI 532

Query: 351  YTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
              I  +I       +   G KR I+  DI +L R R                  I +  +
Sbjct: 533  NRIKQLIDEGFEVFDVKTGLKRPIEFSDIAILTRSRSQNLD----LLKQFAQNNIPLFVS 588

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            D         +  +M+  + + + + D+  V +L+SP+FNF E D+ KI   +    + Y
Sbjct: 589  DVANYFQTFELTIIMSYLKIVDNPDQDIPLVAVLRSPIFNFKEPDLAKI-RIKSPNMSFY 647

Query: 468  EYIQKFANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
              +  + +       + +  +  + +L   A      +    I       +   S   G 
Sbjct: 648  SALTNYVSENDELSKRIKDFLNQLADLRDFALNHRISETIWSIYARTSLLEIVTSLPNGK 707

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVH 578
            +    L+         E   +  L + I+ + +                  N V++MT+H
Sbjct: 708  QRRINLENLYERANSYESAGFKGLYQFINFINRMRKNQKDLAQPLLSKEAENSVQLMTIH 767

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE PVVF +    Q           I     D  GI +     +  + + +     
Sbjct: 768  ASKGLEFPVVFYLGLEHQFQKSDLSGNYII---SGDSCGITVVRSDWRIDSLVKAMGNVT 824

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIIC-----------------------------KHSN 669
             +K   EE  R++YV +TRA  +LI+                                  
Sbjct: 825  KQKQLLEEEARIMYVAVTRARQKLILVTNFKDFAKDTDNLKASLANNGSLTLTSELAAQK 884

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH------------ 717
             ++         +  +         V+  +    +  D  +                   
Sbjct: 885  PADLLLPQLDLAHHFINQITDLQPEVESKQDFLVVTGDATVVELAKETNMDEKGEVSEFI 944

Query: 718  -------HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST--IDTKGKT 768
                   +    P +   T        ++ K    PI +++     +  +   +      
Sbjct: 945  VKNVKKLYEATYPFKDATTTTAYQSVSELKKAFNDPIDDELANSRFIKSANRYLQDIDTR 1004

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                          G  +H +LQ          +  I     ++ KL         +  I
Sbjct: 1005 PGFLFEDGFTGAEIGTAMHLILQFFDYQGNTSVEAEIERLV-QSGKLNSKIVPHLPIAEI 1063

Query: 829  TRLLENPMMTTAMSC--DSYSEVSVSG---------KINCPKKDIIISGRIDQISISQQN 877
            T  + +       +       EVS S            + P   I++ G +D   +    
Sbjct: 1064 TWFVNSDFAKKFWNEPGKLKREVSFSSLLPAADIFTPFSDPNAKILVHGTVDGYYLDDDG 1123

Query: 878  IFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDS 914
            I +F+YKT +    ++      I   +  QL +YE+ L   
Sbjct: 1124 IILFDYKTDYVNKNQLAQSINKIKDKYTGQLRLYERALNQL 1164


>gi|229546208|ref|ZP_04434933.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
            TX1322]
 gi|256852763|ref|ZP_05558133.1| exonuclease RexA [Enterococcus faecalis T8]
 gi|307291096|ref|ZP_07570981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411]
 gi|229308732|gb|EEN74719.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis
            TX1322]
 gi|256711222|gb|EEU26260.1| exonuclease RexA [Enterococcus faecalis T8]
 gi|306497750|gb|EFM67282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411]
          Length = 1264

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 153/963 (15%), Positives = 299/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+     +    I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISNLLWTIYRETAYLDYIGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHVPQEIE---HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     ++    I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKGTSLQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|268319455|ref|YP_003293111.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785]
 gi|262397830|emb|CAX66844.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785]
          Length = 1204

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 158/935 (16%), Positives = 297/935 (31%), Gaps = 120/935 (12%)

Query: 90   NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK---YLNAHYEEAKKKNCV 146
             K   DL ++LKK    F  + ++     + KS     T+      L   + + K++  +
Sbjct: 302  QKLKSDLNDQLKKIFANFFVVEEKEQVNILKKSEKIVKTIVDTEKKLIKRFGQLKREQNL 361

Query: 147  LDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            +D+ D+      +L     +A I +    ++ N ILIDE QD + +Q  +I ++      
Sbjct: 362  IDYSDMEQFAFSILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIAAI------ 415

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                      LF VGD KQSIY F  A P   L +                 I L  +FR
Sbjct: 416  ---KKKGQNNLFMVGDIKQSIYGFRQARPDLFLSKYHAY-----GQNDDSEKIILSDNFR 467

Query: 266  STADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            ST  +   V+ +F+     N  G+       ++  ++          +   +        
Sbjct: 468  STKRVTKTVNSLFNPILTANFGGIDYKKEGQLQFGATY---------YPADLPTASEYIF 518

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLV 380
              ++   + F+    +       + +   I  +   +    + K   KR ++  DI ++ 
Sbjct: 519  TDKKQTQASFEENFGDKMDFSEIQMVIARIKQLKKENFQVWDRKTQLKRPLEYSDIAIIT 578

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R R D                + +   D         +  +M   R I + + D+  V +
Sbjct: 579  RTRSD----NLQVMQEFAKADLPLFVTDAQNYFQTFELVMIMNYLRLIDNPQQDIPLVAV 634

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFC 498
            L+SPLFNF E ++ +I  +                 +    K ++ ++ +  L   A   
Sbjct: 635  LRSPLFNFKEPELGQIRVKTRSGNFYNALTSFASVNSDLGQKCKNFLQQLESLRSFAATH 694

Query: 499  SPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
               +    I       +       G +    L+         E   +  L + IS +E+ 
Sbjct: 695  RISELIWSIYERTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFIERM 754

Query: 558  -----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                             N V++MT+H +KGLE PVVF++  G +  +        I    
Sbjct: 755  RKNQKDLAQPLLSDKADNAVKLMTIHASKGLEFPVVFVMGLGHKYQTRDLSGNFTI---S 811

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
             D  G+ I     +  + + S      ++   EE  R+LYVG+TRA  +LI+    +   
Sbjct: 812  KDGLGLTIKEKDYRIDSLVKSLADVEKRQQMLEEEARILYVGLTRAQQKLILVASVSEME 871

Query: 673  EKKSNQRTWYD-----------------------MVYDSFHNDERVKKIKLTNSINK--- 706
             K+   ++  D                        +      D+ ++ + L         
Sbjct: 872  TKQKKWKSEIDPKTNILPLIRKINAQSPLDFLGPKLEQKHEFDQTIEDMTLALEEQDKIY 931

Query: 707  -------DEWIAYEWSTHHPE----------------NTPLEREETIKQLMDEQKIPKKL 743
                    +    +      +                  P              +I K  
Sbjct: 932  YLKFAVQSDIEEKDEQKDDTQKLSSKMNDVVKTLYNFEYPFADATKTTAYQSVSEIKKVF 991

Query: 744  FSPIKNDINEPYILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPE 798
              P+  ++    +++ S   +    +T +            G  +H +LQ         E
Sbjct: 992  NDPMDTELENSRLISSSNRYLQPIDETPVFLEKQKFTGAEIGTAMHLVLQYYDYQGDKTE 1051

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS--- 852
               +  I                 +L                        + E   S   
Sbjct: 1052 LNLEQEIEELVEL--GKLNPLMVPHLSKEALNWFVMSEFAAEFWQKPEKLHRESQFSSLM 1109

Query: 853  ------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIA 902
                     +     I++ G ID    + + + +F+YKT        E     I   +  
Sbjct: 1110 NASELFNDFSDSAAKILVHGTIDGYFETDKGLILFDYKTDFVDKTHEEQAIDKIKQKYTG 1169

Query: 903  QLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIP 936
            QL +YE+ L +   NK +    LI +   KV  + 
Sbjct: 1170 QLRLYEQALNEISENKKVIGKYLILLDARKVVPVD 1204


>gi|255976207|ref|ZP_05426793.1| exonuclease RexA [Enterococcus faecalis T2]
 gi|307278851|ref|ZP_07559914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860]
 gi|255969079|gb|EET99701.1| exonuclease RexA [Enterococcus faecalis T2]
 gi|306504522|gb|EFM73729.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860]
          Length = 1264

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 156/963 (16%), Positives = 299/963 (31%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGTEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASLYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALLHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFHGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V     +       
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|291535312|emb|CBL08424.1| recombination helicase AddA, Firmicutes type [Roseburia intestinalis
            M50/1]
          Length = 1237

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 151/1016 (14%), Positives = 310/1016 (30%), Gaps = 146/1016 (14%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ----KFTPQKNIITQEINKKSPD 95
                   LKK + +  +       + +  LS   L          +K  + +++ +   D
Sbjct: 248  AKALEGDLKKYKEIAASESFADFYQNYRNLSYDRLASSRGFDGNEEKLELVKKLREMGKD 307

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
              +K+ +               K        + L    +  +   K++  ++DF DL   
Sbjct: 308  AVKKINRQYFFTSPEIMAEQMKKTAPMAAELVRLTLEFDETFTAEKRRKNLVDFHDLEHF 367

Query: 156  TNDLLKKRDVSA--WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
              ++    +         +       I+IDE QD++ +Q  ++R+++ +           
Sbjct: 368  ALNIFVDEETGKVKKTAEEFRDNFKEIMIDEYQDSNEVQETILRAISRE-------ERGE 420

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              LF VGD KQSIY F  A P+  + +             K   I+L  +FRS  ++L  
Sbjct: 421  YNLFMVGDVKQSIYRFRLARPELFMEKYDTYS----LTDAKMQRIDLHKNFRSRNEVLDF 476

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F         + +             Q  T     +++                  
Sbjct: 477  SNDIFYRIMKRNLGNVEYDADAALYPGASYQEETDMFTPEILLVDGDD---------ELL 527

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITF 391
            D    +    + AR IA  I  ++GT  +     G+ R +Q  D+++L+R          
Sbjct: 528  DDAAADDKKLLEARMIAKRIKELMGTQKVTDKATGELRPVQYSDMVILLRSLSG---YAD 584

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                + ND  I             + ++ ++++ R + +   D+    +L+SP+   S++
Sbjct: 585  RFAAVLNDAGIPAHTVSATGYFSTVEVQTVLSMLRILDNPRQDIPLTAVLRSPIAGLSDE 644

Query: 452  DIFKICTQRHE--------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
            ++ K+  +  +               +   E   +  +    K         +L  +   
Sbjct: 645  ELAKLRLKDKDVRFYECVLEECERLKQEAEENPGQGRDDSEEKLYRFYVTYEKLRQLVPD 704

Query: 498  CSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
               H+   L+L          +   G+     L   +   +  E  SY  L   +  +++
Sbjct: 705  TPIHELIELLLKETGYGDYAAAMPAGDRRHANLLMLVEKAIAYENTSYKGLFHFVRYIDE 764

Query: 557  YPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                            N N VRIM++H +KGLE PVVF    G          ++ + P 
Sbjct: 765  LQKYDVDFGEADLIGENENVVRIMSIHKSKGLEFPVVFAAGMGKNFNRQDTRSRLVLHPE 824

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            L           + KS       + K +      E  R+LYV +TRA ++LI+      +
Sbjct: 825  LGIGLDYMDGKQRVKSVTIAKRAIAKQIDMENLGEELRVLYVALTRAKEKLILTGSLKKA 884

Query: 672  NE----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
             E                 + +   + D +  +  + +   +I+L  +    +       
Sbjct: 885  EETLSYIKAFPEELLSYLGRESAAGYLDWILPAAASCQDKYQIRLMRAAELVQEEMETQI 944

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                  +    +         Q+  ++       + +       S  + K +   E+   
Sbjct: 945  KDEWNRSACMEKAAQADEKKVQQFSERFHRRYAYENDVQRKNKYSVSELKHRAMREAFEK 1004

Query: 776  DNQT------------------------------FNRGLIIHKLLQVIFTLPEHKRKNFI 805
            + +                                 RG  +H++++          K  +
Sbjct: 1005 EEEAVPVFQSEEVVPYVPAFAREIEQQSEDASPGALRGTAMHRIMECYQFSSGVSAKEQV 1064

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINCP--- 858
                 K            +   +   +   +     +       Y E             
Sbjct: 1065 AGMLEKEQITPEMHGLIRIP-QVEYFVNADIGKRMGAAEKDGKLYREKPFVMGFTDEQLD 1123

Query: 859  ------------------------------KKDIIISGRIDQISISQQNIFIFEYKTHHH 888
                                          K+  +I G ID   I +  I + +YKT   
Sbjct: 1124 EFGFAENTEQAEKVKSMGRVGNIGETEYTGKELTLIQGIIDVFWIEKDGIVLLDYKTDRV 1183

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNK--------SLVCLLIY-VSEPKVFII 935
                 + +   + AQL +YE+ L   Y N+         +   L+Y     KV  +
Sbjct: 1184 --DTEKELSERYAAQLKLYEEALNRVYENEKDAAGNPLKVKEKLLYSFRLGKVIPV 1237


>gi|256965486|ref|ZP_05569657.1| UvrD/REP helicase [Enterococcus faecalis HIP11704]
 gi|307273804|ref|ZP_07555026.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855]
 gi|256955982|gb|EEU72614.1| UvrD/REP helicase [Enterococcus faecalis HIP11704]
 gi|306509489|gb|EFM78537.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855]
          Length = 1264

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 156/963 (16%), Positives = 298/963 (30%), Gaps = 136/963 (14%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310  KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370  VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                         LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430  LSA-------EGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263  SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478  NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
            +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538  ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595  LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------ISKFQHVIKYI 488
              +L+SP+    E+++  I     ET + YE    F               K     + +
Sbjct: 651  AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLMFNQKMEPTMEEAVVQEKTIRFAESL 709

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +    A+          I               G +    L   ++     E+ ++  L
Sbjct: 710  EKWREQARRNQISTLLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGL 769

Query: 548  QELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + +  +E+     K        +  N VR+MT+H +KGLE PVVF++D   +       
Sbjct: 770  FQFVRFIEKMQEKDKDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLN 829

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
            ++     +L           +          + +   +    E  R LYV +TRA  +  
Sbjct: 830  ERYIFEENLGVGIRYLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLF 889

Query: 662  -----------------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN------- 691
                                   L++   +   ++          +V             
Sbjct: 890  LVGSYKDQAAMWKEWLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKAAEYQREVV 949

Query: 692  ---------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           I+  N       I              E+ +     ++       
Sbjct: 950  VSNVPQVKKHPANFHIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLS 1009

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--------------------------------- 769
               P +         + S I                                        
Sbjct: 1010 FNYPFEVATRTTSYQSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSK 1069

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                  +        G   H LLQ+I     P ++    +     +N  + PA   K  L
Sbjct: 1070 PKFLDTVQAPSAAEIGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNL 1129

Query: 826  LSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              I    +  +    +        E   S  I   +           D++I G ID    
Sbjct: 1130 EQIVAFFDTALGKQLIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGFIE 1189

Query: 874  SQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                  +++YKT H     PQ I  I   +  Q+++Y + L+++   +     LI ++  
Sbjct: 1190 LDNQCILYDYKTDHVKSTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGG 1249

Query: 931  KVF 933
             + 
Sbjct: 1250 VII 1252


>gi|312898123|ref|ZP_07757515.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis F0359]
 gi|310620791|gb|EFQ04359.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis F0359]
          Length = 1220

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 161/1018 (15%), Positives = 308/1018 (30%), Gaps = 128/1018 (12%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +++      +E  E +           V ++N       E       K A  ++  S+ +
Sbjct: 229  IRSALSRCADEYDESLK------ILEYVEELNGQYERFKEE--RNRFKAASEIKSWSRME 280

Query: 61   CIEERFS--LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                 F    L S               +    K+ D  +K++ +       +   +  +
Sbjct: 281  DFFSDFDFGRLKSMRNLVADVADAWNDCKAHRDKAKDTVKKIRDTYFTKTSKQWVDDLIQ 340

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV------SAWIRYK 172
               +  A   L +     Y  AK++   LDF DL      +L   D        +    +
Sbjct: 341  AGHTMSALSGLIRDFYKAYNAAKREKNWLDFGDLEHYCLQILTVHDEQTGEVLPSAAAKE 400

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            +      ILIDE QDT+ +Q  +   +           S     F VGD KQSIY F  A
Sbjct: 401  MRSTFKEILIDEYQDTNGVQELITTLV-----------SDGTNRFMVGDIKQSIYRFRLA 449

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +P   L +    ++RA         I L ++FRS   ++  V+ +FS          D  
Sbjct: 450  DPTLFLEKYMTFERRAEAVN---RCIVLSMTFRSAPAVIEAVNDIFSYAMTEAATGMDYG 506

Query: 293  TTIRHRSSR-IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
               +    R   + G  +L                   +   D   +ESS     R +A 
Sbjct: 507  DNEKLYVGRTDDEPGVAELHILDEVTTYESLETDGGEESDDDDDSAEESSFIRQCRFVAA 566

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             I  +   D          ++ KDI+VL+R              +  D  I      +  
Sbjct: 567  RIGELKAADP--------SLKYKDIVVLLRSVSRKA---EDLLTVLQDAGIPAYAEQKGG 615

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---ETETVYE 468
              +   ++ + AL   I +   D+    +L+SP+   +E  + +I   R           
Sbjct: 616  YFNVTEVRLMTALLACIDNPCRDIELAAVLRSPIVGINEATLAEIRMYRDGYLVDALEAY 675

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVID 527
                       +    +  +      ++     +    I           + + G+    
Sbjct: 676  TAGLHDGVYKERLSEFLFRLDAWRTYSRRAGVAELLRRIYEKTSYIDYVAAMKNGDLRRA 735

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKG 582
             L+       + E+  +  L   +  +E+           R      + VRIMT+H +KG
Sbjct: 736  NLEALYERAGQYERAGFRGLFRFLKFIERMKKKGLDLAPARVVGEEEDVVRIMTIHKSKG 795

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PVVFLV+T          + +     L           +        + + +     
Sbjct: 796  LEFPVVFLVNTEKTFNKQDEQEPVLYHKELGIGIRAFDAKWRMTWPTLAYNGIKERTVWE 855

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEK------------------KSNQRTWYDM 684
             + E  RLLYV MTRA ++LI+     +   K                  ++       +
Sbjct: 856  NRAEEERLLYVAMTRAKNRLILVGTVKSRGSKNTDCLYDRLARFRNDVHAEAGTSYLDWI 915

Query: 685  VYDSFHNDERVKKIKLTNSINK-------------DEWIAYEWSTHHPENTPLEREETIK 731
            +         V  +  ++  ++             +   A +             E    
Sbjct: 916  LPPLLRKLPDVTDLTASDENSEFVHAGVWQVTVHTEPVDAGKAMADVLRPEEAHLEAVRA 975

Query: 732  QLMDEQKIPKK------LFSPIKNDINEPYILNPSTIDTKGKTNLESLL----------- 774
             +     IP           P +   +    L+ S I  +     E              
Sbjct: 976  DMPTGTAIPAWLDEALSFTYPFEAATHTVAKLSVSEIKRRLAEATEEEDLLQEGEHLFST 1035

Query: 775  ------------------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
                              +       G + HK +Q++      K          KN+  +
Sbjct: 1036 GVEDDETDLTRPPWLCEKASQSPTFAGTVFHKAVQLLDFADLTKENIVEQVEGWKNSGRF 1095

Query: 817  PAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSGKIN------CPKKDIIISGRI 868
             ++E   L ++         +   +  S D   E   +   +         + I++ G +
Sbjct: 1096 TSEELSRLRMNDLYHFAESHLAARIQASPDVRREYGFTFLADSDKVSRVEGERILVQGVV 1155

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            D + +      I +YKT        +     +  QL++Y+  ++     + +  ++IY
Sbjct: 1156 DCLFVEGDEWIIVDYKTDRL--NTADEFKKRYAVQLNLYKLAVEQI-SQRKVKEMIIY 1210


>gi|312871743|ref|ZP_07731831.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a]
 gi|311092685|gb|EFQ51041.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a]
          Length = 1206

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 161/928 (17%), Positives = 309/928 (33%), Gaps = 123/928 (13%)

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK---YLNAHYEEAKKKNCVLDFEDLII 154
            ++LKK    F    ++     + K+     T+AK        + + K+KN ++DF D+  
Sbjct: 313  DQLKKLFASFFITDEKEQLELLAKAQKLVKTIAKVELTFINEFGKLKRKNNIIDFNDMEQ 372

Query: 155  NTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
                +L    + S   R     + + IL+DE QD + +Q ++I+ + E            
Sbjct: 373  FAYKILTSDSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVIKEK---------GK 423

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              LF VGD KQSIY F  A+P   L++             +   I L  +FRS+ ++  +
Sbjct: 424  NNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERIILSDNFRSSKNVTQI 478

Query: 274  VDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
            V+ +F     EN  G++      +++ +      +GT   +    S  D      +E   
Sbjct: 479  VNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEV 538

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTP 387
            +  D +            +   I  +   D    +     KR I+  DI +L R + +  
Sbjct: 539  NDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE-- 586

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
                       + K+ +  +D         +  +    + I + + D+  V +++SPL+ 
Sbjct: 587  --NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYG 644

Query: 448  FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDF 503
            F+E +  KI      + + Y+ I  +      +      + I  +    + +      + 
Sbjct: 645  FTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELSHFRNFSIDHRISEL 703

Query: 504  FTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY----- 557
               I       +       G +    L+         E + +  L + I+ +++      
Sbjct: 704  ICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKY 763

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
              +   +     + +++MT+H +KGLE P+VFL+    +           I        G
Sbjct: 764  DFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLG 821

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
            + I     +  + + S      K    EE  R+LYVG+TRA  +LI+       N     
Sbjct: 822  LTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANENIIPDF 881

Query: 678  QR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT------------- 722
            Q     ++ +     ++       L   +  ++      S    E               
Sbjct: 882  QNKLDAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDRELDKEDKVHYIQVMQL 941

Query: 723  --------------------------------PLEREETIKQLMDEQKIPKKLFSPIKND 750
                                            P +   T        +I K    P   +
Sbjct: 942  KSQASVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKE 1001

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFI 805
             +   ++N +       ++  + L          G  +H LLQ              + I
Sbjct: 1002 SDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLI 1061

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------G 853
             +   +N          +L               A    S + Y E+  S          
Sbjct: 1062 ENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFH 1119

Query: 854  KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEK 909
              N     I++ G ID   I    I +F+YKT       +E    ++   +  QLS+Y  
Sbjct: 1120 NFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYAS 1179

Query: 910  ILKDSYPNKSLVC-LLIYVSEPKVFIIP 936
             L +   +K +    LI +S  K+  + 
Sbjct: 1180 ALNNL-SDKKVKAKYLILLSINKIVKVD 1206


>gi|312874236|ref|ZP_07734270.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d]
 gi|311090306|gb|EFQ48716.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d]
          Length = 1206

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 159/928 (17%), Positives = 306/928 (32%), Gaps = 123/928 (13%)

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK---YLNAHYEEAKKKNCVLDFEDLII 154
            ++LKK    F    ++     + K+      +AK        + + K+KN ++DF D+  
Sbjct: 313  DQLKKLFASFFITDEKEQLELLAKAQKLVKAIAKVELTFINEFGKLKRKNNIIDFNDMEQ 372

Query: 155  NTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
                +L    + S   R     + + IL+DE QD + +Q ++I+ + E            
Sbjct: 373  FAYKILTSDSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVIKEK---------GK 423

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              LF VGD KQSIY F  A+P   L++             +   I L  +FRS+ ++  +
Sbjct: 424  NNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERIILSDNFRSSKNVTQI 478

Query: 274  VDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
            V+ +F     EN  G++      +++ +      +GT   +    S  D      +E   
Sbjct: 479  VNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEV 538

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTP 387
            +  D +            +   I  +   D    +     KR I+  DI +L R + +  
Sbjct: 539  NDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE-- 586

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
                       + K+ +  +D         +  +    + I + + D+  V +++SPL+ 
Sbjct: 587  --NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYG 644

Query: 448  FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDF 503
            F+E +  KI      + + Y+ I  +      +      + I  +    + +      + 
Sbjct: 645  FTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELSHFRNFSIDHRISEL 703

Query: 504  FTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY----- 557
               I       +       G +    L+         E + +  L + I+ +++      
Sbjct: 704  ICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKY 763

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
              +   +     + +++MT+H +KGLE P+VFL+    +           I        G
Sbjct: 764  DFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLG 821

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
            + I     +  + + S      K    EE  R+LYVG+TRA  +LI+             
Sbjct: 822  LTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANEKIIPDF 881

Query: 678  QR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT------------- 722
            Q     ++ +     ++       L   +   +      S    E               
Sbjct: 882  QNQLDAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDRELDKEDKVHYIQVMQL 941

Query: 723  --------------------------------PLEREETIKQLMDEQKIPKKLFSPIKND 750
                                            P +   T        +I K    P   +
Sbjct: 942  KSQPSVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKE 1001

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFI 805
             +   ++N +       ++  + L          G  +H LLQ              + I
Sbjct: 1002 SDNSKLINSANKYLMPISDKPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLI 1061

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------G 853
             +   +N          +L               A    S + Y E+  S          
Sbjct: 1062 ENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFH 1119

Query: 854  KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEK 909
              N     I++ G ID   I    I +F+YKT       +E    ++   +  QLS+Y  
Sbjct: 1120 NFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYAS 1179

Query: 910  ILKDSYPNKSLVC-LLIYVSEPKVFIIP 936
             L +   +K +    LI +S  K+  + 
Sbjct: 1180 ALNNL-SDKKVKAKYLILLSINKIVKVD 1206


>gi|325912158|ref|ZP_08174556.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D]
 gi|325476108|gb|EGC79276.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D]
          Length = 1206

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 154/942 (16%), Positives = 305/942 (32%), Gaps = 128/942 (13%)

Query: 83   NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
            +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 305  SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 358

Query: 141  KKKNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K+KN ++DF D+      +L    + S   R     + + IL+DE QD + +Q ++I+ +
Sbjct: 359  KRKNNIIDFNDMEQFAYKILTSDSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 418

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             E              LF VGD KQSIY F  A+P   L++             +   I 
Sbjct: 419  KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 464

Query: 260  LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316
            L  +FRS+ ++  +V+ +F     EN  G++      +++ +      +GT   +    S
Sbjct: 465  LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 524

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373
              D Q    ++   +  D +            +   I  +   D    +     KR I+ 
Sbjct: 525  NDDKQSIADEDEEVNDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 574

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             DI +L R + +             + K+ +  +D         +  +    + I + + 
Sbjct: 575  SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 630

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKYIH 489
            D+  V +++SPL+ F+E +  KI      + + Y+ I  +      +     ++ I  + 
Sbjct: 631  DIPLVSVMRSPLYGFTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCKNFINELS 689

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
               + +      +    I       +       G +    L+         E + +  L 
Sbjct: 690  HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 749

Query: 549  ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + I+ +++        +   +     + +++MT+H +KGLE P+VFL+    +       
Sbjct: 750  QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 809

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                I        G+ I     +  + + S      K    EE  R+LYVG+TRA  +LI
Sbjct: 810  NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 867

Query: 664  ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            +             Q     ++ +     ++       L   +   +      S    E 
Sbjct: 868  MVSTMANEKIIPDFQNQLDAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDREL 927

Query: 722  T---------------------------------------------PLEREETIKQLMDE 736
                                                          P +   T       
Sbjct: 928  DKEDKVHYIQVMQLKSQPSVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 987

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794
             +I K    P   + +   ++N +       ++  + L          G  +H LLQ   
Sbjct: 988  SEIKKAFEYPNDKESDNSKLINSANKYLMPISDKPAFLKKANFTGAEIGTAMHLLLQYYD 1047

Query: 795  ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848
                       + I +   +N          +L               A    S + Y E
Sbjct: 1048 YTIEYSPTNVDDLIENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYRE 1105

Query: 849  VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895
            +  S            N     I++ G ID   I    I +F+YKT       +E    +
Sbjct: 1106 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 1165

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936
            +   +  QLS+Y   L +   +K +    LI +S  K+  + 
Sbjct: 1166 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 1206


>gi|240144976|ref|ZP_04743577.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82]
 gi|257202969|gb|EEV01254.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82]
          Length = 1237

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 150/1016 (14%), Positives = 309/1016 (30%), Gaps = 146/1016 (14%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ----KFTPQKNIITQEINKKSPD 95
                   L+K + +  +       + +  LS   L          +K  + +++ +   D
Sbjct: 248  AKALEGDLEKYKEIAASESFADFYQNYRNLSYDRLASSRGFDGNEEKLELVKKLREMGKD 307

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
              +K+ +               K        + L    +  +   K++  ++DF DL   
Sbjct: 308  AVKKINRQYFFTSPEIMAEQMKKTAPMAAELVRLTLEFDETFTAEKRRKNLVDFHDLEHF 367

Query: 156  TNDLLKKRDVSA--WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
              ++    +         +       I+IDE QD++ +Q  ++R+++ +           
Sbjct: 368  ALNIFVDEETGKVKKTAEEFRDNFKEIMIDEYQDSNEVQETILRAISRE-------ERGE 420

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              LF VGD KQSIY F  A P+  + +             K   I+L  +FRS  ++L  
Sbjct: 421  YNLFMVGDVKQSIYRFRLARPELFMEKYDTYS----LTDAKMQRIDLHKNFRSRNEVLDF 476

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F         + +             Q  T     +++                  
Sbjct: 477  SNDIFYRIMKRNLGNVEYDADAALYPGASYQEETDMFTPEILLVDGDD---------ELL 527

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITF 391
            D    +    + AR IA  I  ++GT  +     G+ R +Q  D+++L+R          
Sbjct: 528  DDAAADDKKLLEARMIAKRIKELMGTQKVTDKATGELRPVQYSDMVILLRSLSG---YAD 584

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                + ND  I             + ++ ++++ R + +   D+    +L+SP+   S++
Sbjct: 585  RFAAVLNDAGIPAHTVSATGYFSTVEVQTVLSMLRILDNPRQDIPLTAVLRSPIAGLSDE 644

Query: 452  DIFKICTQRHE--------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
            ++ K+  +                  +   E   +  +    K         +L  +   
Sbjct: 645  ELAKLRLKDKNVRFYECVLEECERLKQEAEENPGQGRDDSEEKLYRFYVTYEKLRQLVPD 704

Query: 498  CSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
               H+   L+L          +   G+     L   +   +  E  SY  L   +  +++
Sbjct: 705  TPIHELIELLLKETGYGDYAAAMPAGDRRHANLLMLVEKAIAYENTSYKGLFHFVRYIDE 764

Query: 557  YPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                            N N VRIM++H +KGLE PVVF    G          ++ + P 
Sbjct: 765  LQKYDVDFGEADLIGENENVVRIMSIHKSKGLEFPVVFAAGMGKNFNRQDTRSRLVLHPE 824

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            L           + KS       + K +      E  R+LYV +TRA ++LI+      +
Sbjct: 825  LGIGLDYMDGKQRVKSVTIAKRAIAKQIDMENLGEELRVLYVALTRAKEKLILTGSLKKA 884

Query: 672  NE----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
             E                 + +   + D +  +  + +   +I+L  +    +       
Sbjct: 885  EETLSYIKAFPEELLSYLGRESAAGYLDWILPAAASCQDKYQIRLMRAAELVQEELETQI 944

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                  +    +         Q+  ++       + +       S  + K +   E+   
Sbjct: 945  KDDWNRSACMEKAAQADEKKVQQFSERFHRRYAYENDVQRKNKYSVSELKHRAMREAFEK 1004

Query: 776  DNQT------------------------------FNRGLIIHKLLQVIFTLPEHKRKNFI 805
            + +                                 RG  +H++++          K  +
Sbjct: 1005 EEEAVPVFQYEEVVPYVPAFAREIEQQSEDASPGALRGTAMHRIMECYQFSSGVSAKEQV 1064

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINCP--- 858
                 K            +   +   +   +     +       Y E             
Sbjct: 1065 AGMLEKEQITPEMHGLIRIP-QVEYFVNADIGKRMGTAEKDGKLYREKPFVMGFTDEQLD 1123

Query: 859  ------------------------------KKDIIISGRIDQISISQQNIFIFEYKTHHH 888
                                          K+  +I G ID   I +  I + +YKT   
Sbjct: 1124 EFGFAENTEQAEKVKSMGRVGNIGETEYTGKELTLIQGIIDVFWIEKDGIVLLDYKTDRV 1183

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNK--------SLVCLLIY-VSEPKVFII 935
                 + +   + AQL +YE+ L   Y N+         +   L+Y     KV  +
Sbjct: 1184 --DTEKELSERYAAQLKLYEEALNRVYENEKDAAGNPLKVKEKLLYSFRIGKVIPV 1237


>gi|322391963|ref|ZP_08065427.1| exonuclease RexA [Streptococcus peroris ATCC 700780]
 gi|321145189|gb|EFX40586.1| exonuclease RexA [Streptococcus peroris ATCC 700780]
          Length = 1215

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 166/1033 (16%), Positives = 354/1033 (34%), Gaps = 142/1033 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQ 60
            K  F ++  +  E I ++LW +  F    ++             ++ +    +   +   
Sbjct: 225  KANFPIAKEKLAEAIKENLWDIEDFFRHHLDNDAKEFGKAAYLESVQQVLDEIISLTHES 284

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNT 116
              E+   +L       K    + +       +  +LKE   + +    ++ I + D+   
Sbjct: 285  TFEQYQEVLERVVSISKDKGGRALTNASRKAELLELKEAYNQERKDKFEKLIALNDQITL 344

Query: 117  YKMFK-STLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
             K  +     S  LAK            Y + K++    +F D+   T ++L+       
Sbjct: 345  LKFQEKYHQESWDLAKTFQVFMSDFVDAYRKRKREENTFEFADISHYTIEILENFP---Q 401

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +R +  +  + +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY 
Sbjct: 402  VRQEYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGNNRFMVGDIKQSIYR 450

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F  A+P+    +     K      ++  +I L  +FRS++++L   + VF        L 
Sbjct: 451  FRQADPQIFNEKFHRFAK----NSEEGQLILLKENFRSSSEVLNATNDVFKH------LM 500

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
            ++    I +        G   L +             ++      +     +  +   R 
Sbjct: 501  DEEVGEISYDGMHQLIFGNTDL-QANPENKAEVLLYDKDDDGDSDEEELATNKLTGEMRM 559

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +   I ++            + +  KDI +L   R     +          Y I V  +D
Sbjct: 560  VIKEILHLHND---------KGVPFKDIALLTAARSRNNQVLLALSE----YGIPVKTDD 606

Query: 409  RF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                    L ++ ++   R I +   D + V ++KSP+F+F ED++ ++  Q+ E ++  
Sbjct: 607  AEKSYLQSLEVQVMLDTLRVIHNPLQDFALVALMKSPMFSFDEDELARLALQKSEDKSQE 666

Query: 468  EYIQKFANCG--------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             + +K  N                  K    ++ +      ++  S +D    I   +  
Sbjct: 667  NFYEKLVNAQENTGLQKNLITDELQKKLNFFMETVQTWRLFSKTHSLYDLIWKIYSERFY 726

Query: 514  RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----- 567
                 +   G      L        + E++++  L   I+ ++Q    +K   ++     
Sbjct: 727  YDYVGALPNGQARQANLYALALRADQFEKSNFKGLSRFITMIDQV-LEVKHDLASVTVAP 785

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------ 615
              + V +M++H +KGLE P VF+++   Q      + ++ +                   
Sbjct: 786  PKDAVELMSIHKSKGLEFPYVFILNIDQQFNKQDSMSEVILSRKNGLGLKYVARVATNAK 845

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK- 674
                    +    +   +   + L+ ++  E  RLLYV MTRA  ++ +    +    + 
Sbjct: 846  EEYVPSTIKLSIPSLTYTQNEEELQLASYSELMRLLYVAMTRAEKKIYLVGKGSREKSEA 905

Query: 675  ------------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW-- 714
                               SN + W   +Y +F  ++    ++        +    +   
Sbjct: 906  KEYPTNGKGLLTRETRLDASNFQAWIWAIYQAFSKEDLHFSVRFEGEEELTKEAIGKLEN 965

Query: 715  --STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---- 768
                         + +TI++ +   K  +      +  IN P +  PS +    +     
Sbjct: 966  KSQLQDLSQADNRQSDTIREALQMLKEVEVYNQIHRAAINLPSVQTPSQLKKFYEPVMDM 1025

Query: 769  --------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                                   S          G   H+L+Q I    +   +    + 
Sbjct: 1026 EGVVVAGQSKPKETIIQFDLPDFSKTEKVTGAEIGSATHELMQRINLAKQPTLETLTEAL 1085

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSG--KINCPKKDIII 864
              +  +   A + K  L  I    +  +    ++     Y E   S   + +  ++D ++
Sbjct: 1086 --EQVQATSAVKDKVNLEKILSFFDTALGQEILANQDKLYREHPFSMLKRDSKSQEDFVV 1143

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
             G +D   + +  I +F+YKT H+  +    +   +  QLS+Y + L  SY    +   L
Sbjct: 1144 RGILDGYLVYKDKIVLFDYKTDHY--EYPSQLIERYRGQLSLYAEALSRSYEIDKIEKYL 1201

Query: 925  IYV--SEPKVFII 935
            I +     +V  +
Sbjct: 1202 ILLGKDAVEVVEV 1214


>gi|259500614|ref|ZP_05743516.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335]
 gi|302191303|ref|ZP_07267557.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus iners AB-1]
 gi|259167998|gb|EEW52493.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335]
          Length = 1206

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 154/942 (16%), Positives = 306/942 (32%), Gaps = 128/942 (13%)

Query: 83   NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
            +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 305  SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 358

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K+KN ++DF D+      +L     ++ + R     + + IL+DE QD + +Q ++I+ +
Sbjct: 359  KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 418

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             E              LF VGD KQSIY F  A+P   L++             +   I 
Sbjct: 419  KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 464

Query: 260  LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316
            L  +FRS+ ++  +V+ +F     EN  G++      +++ +      +GT   +    S
Sbjct: 465  LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 524

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373
              D      +E   +  D +            +   I  +   D    +     KR I+ 
Sbjct: 525  NDDKPSIADEEEEVNDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 574

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             DI +L R + +             + K+ +  +D         +  +    + I + + 
Sbjct: 575  SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 630

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIH 489
            D+  V +++SPL+ F+E +  KI      + + Y+ I  +      +      + I  + 
Sbjct: 631  DIPLVSVMRSPLYGFTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELS 689

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
               + +      +    I       +       G +    L+         E + +  L 
Sbjct: 690  HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 749

Query: 549  ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + I+ +++        +   +     + +++MT+H +KGLE P+VFL+    +       
Sbjct: 750  QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 809

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                I        G+ I     +  + + S      K    EE  R+LYVG+TRA  +LI
Sbjct: 810  NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 867

Query: 664  ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            +       N     Q     ++ +     ++       L   +  ++      S    E 
Sbjct: 868  MVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDREL 927

Query: 722  T---------------------------------------------PLEREETIKQLMDE 736
                                                          P +   T       
Sbjct: 928  DKEDKVHYIQVMQLKSQASVKISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 987

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794
             +I K    P   + +   ++N +       ++  + L          G  +H LLQ   
Sbjct: 988  SEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYD 1047

Query: 795  ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848
                       + I +   +N          +L               A    S + Y E
Sbjct: 1048 YTIEYSPTNVDDLIENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYRE 1105

Query: 849  VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895
            +  S            N     I++ G ID   I    I +F+YKT       +E    +
Sbjct: 1106 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 1165

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936
            +   +  QLS+Y   L +   +K +    LI +S  K+  + 
Sbjct: 1166 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 1206


>gi|325956899|ref|YP_004292311.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus acidophilus
            30SC]
 gi|325333464|gb|ADZ07372.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus acidophilus
            30SC]
 gi|327183678|gb|AEA32125.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus
            GRL 1118]
          Length = 1206

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 162/986 (16%), Positives = 302/986 (30%), Gaps = 129/986 (13%)

Query: 46   ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105
                   L    + +  +E+  LL       ++  + +   +++ +   DL++   +++ 
Sbjct: 253  DQNLQNFLAALDEDKPYDEQRDLLRLCTFNGRY-RKSSKWDEDLLEFYGDLQKLKDEAKS 311

Query: 106  EFIKIRDRFNTYKMFKST----------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
            +       F      +             A       L   + + K+   ++D+ D+   
Sbjct: 312  QVFDTFTAFFATDEKEQVKVMQDGQKIVAAIAQAEIALIERFNKLKRDEDLIDYSDMEQL 371

Query: 156  TNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               +L +    S   R     +   IL+DE QD + +Q  +I+ +               
Sbjct: 372  AYRILSQDTSSSQMARDFYQSKFKEILVDEYQDINALQENIIQQV---------RQPGKN 422

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            TLF VGD KQSIY F  AEP   LR+     +           I L  +FRST  +   V
Sbjct: 423  TLFMVGDVKQSIYGFRQAEPSLFLRKYHDFAQEQNEHE---ERILLSDNFRSTEPVTRTV 479

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + +F+   ++     D     +           +    +V+     +   +      + +
Sbjct: 480  NHLFNSILSSNFGGIDYQKEGQLVFGAKYYPSNLPKASEVIIHKKERGGDENSDKVDFSE 539

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391
                        + +   I  +        +   G+ R ++  DI +L R   D      
Sbjct: 540  I-----------QMVLARIKQLKEEHMQVFDSKSGQMREMKYSDIAILTRSHSD----NL 584

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                      I +   D         +  +M   + I + + D+  V +L+SPLFNF E 
Sbjct: 585  EIMQEFAKQDIPLFVTDAENYFQTFELTVIMNYLKIIDNPDQDIPLVTVLRSPLFNFGEK 644

Query: 452  DIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
            D+ KI  +   +             +    K +  +  +  L   A      +    I  
Sbjct: 645  DLAKIRIKSKNSSFYSALTSYVGVGDQLSDKCKDFLNQLASLREFATTHRISELIWSIYT 704

Query: 510  AKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKR 563
                 +   +   G +    L+         E   +  L + I+ +      Q       
Sbjct: 705  RTNLLEIMTALPNGEQRRVNLEALYERATSYESAGFKGLYQFINFINRMRQSQKDLAQPL 764

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  N VR+MT+H +KGLE P+VF +    Q           I     D  G+ +   
Sbjct: 765  LTKEAGNAVRLMTIHGSKGLEFPIVFYLGMHHQYQLRDLKGNYVI---NADGLGVTLREE 821

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR---T 680
              +  + + +      K+   EE  R+LYV +TRA  +LI+     + ++K  +      
Sbjct: 822  HYRIDSLVKAMGNITKKRQLLEEEARILYVALTRAKQKLIMVGDIPSFDKKVKDWSNELD 881

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER-------------- 726
                +  +           +  ++  D  +A   S         +               
Sbjct: 882  HEGQLSLADKLAATTPLSFMGPALAFDRRVAIRISDITNSLDQSQPILFVDFSDDDAIAN 941

Query: 727  -------------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                         E  IK L +      +   P K+ I        S I        E+ 
Sbjct: 942  NAVNEEKGTRKDSEPEIKTLTETATKLYQFDYPFKDAIATTAYQAVSEIKKAFNDPDEAE 1001

Query: 774  LSDN-------------------------QTFNRGLIIHKLLQVIF---TLPEHKRKNFI 805
            L ++                              G   H +LQ         + + +  I
Sbjct: 1002 LENSHLLASTNRYLQPIDTKPSFLYQTKFTGAEIGTATHLILQYYDYTGDGSDEQLEQEI 1061

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVSG--------- 853
                 +  K   A    +L         +            D   EV  S          
Sbjct: 1062 QHLIEQ--KKLNADIVSSLKKDQIEWFVHSDFAKDFWQRPEDLKREVDFSSLLSARTLFD 1119

Query: 854  KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEK 909
              + P   I++ G ID   I    I +F+YKT H     ++     I   +  QL +YE+
Sbjct: 1120 DFSDPNAKILVHGTIDGYFIINNGIILFDYKTDHVDKSHLDEAIELIKEKYTGQLRLYER 1179

Query: 910  ILKDSYPNKSLVCLLIYVSEPKVFII 935
             L +    K +   LI +   +   +
Sbjct: 1180 ALNEFSTKKVIGKYLILLDAKQAVEV 1205


>gi|296532162|ref|ZP_06894922.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC
           49957]
 gi|296267510|gb|EFH13375.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC
           49957]
          Length = 943

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 194/716 (27%), Positives = 334/716 (46%), Gaps = 32/716 (4%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT- 59
           L+ R GL          + L  +     S++ +  +L  ++GN     +   ++      
Sbjct: 240 LRRRLGLP---REGGESEALLAMASAVDSEMVRAAALLRQSGNANDRDRGAVMKAWIDLS 296

Query: 60  -QCIEERFSLLSSFFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                 R+    S FLT + +P+K++ T+  + ++  +++  +    +      +    +
Sbjct: 297 HAARAARWEEWCSIFLTAEGSPRKSLGTKGGLKERHEEVQALMAAEAERIHAFEEERKAW 356

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           ++  ++LA L LA+ +   Y   K +   +DF+DLI     LL     + W+ YK+D  +
Sbjct: 357 RLHAASLALLALAQPVLEAYTARKARQGAVDFDDLIQAARGLLHDPGSA-WVLYKLDGGL 415

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP--RTLFAVGDEKQSIYSFHGAEPK 235
           +H+L+DE QD++  QWE+   L E+FF G  T      R++FAVGDEKQSIY F GA+  
Sbjct: 416 DHLLLDEAQDSNPHQWEIAARLAEEFFAGLGTREPESIRSIFAVGDEKQSIYGFQGADAA 475

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
              R +R  +   T AG +F+ + L +SFRSTA +L +VD VF+     +G+  + +  +
Sbjct: 476 GFARWERHFEGAVTAAGAEFAAVPLNVSFRSTAPVLALVDAVFADGPARRGVVAEGS-VL 534

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            HR+ R GQ G V++W  +     +   P    W    + + ++ + +++A  +A  I+ 
Sbjct: 535 THRADREGQAGMVEIWPLLTRPDSAALQP----WEVPEEPVAEDDAEALMAESLAARIAQ 590

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           M+  + + + G  R I+  DILVL+R+R      + L         ++V G DR  L + 
Sbjct: 591 MVREERLPARGD-RPIRPGDILVLLRRRTG---FSNLLVRALKARGVAVGGVDRMQLVEQ 646

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
           +A++DL+AL   +L  EDDL    +LKSPL N SE ++ ++   R +         + ++
Sbjct: 647 IAVQDLLALCDVLLLPEDDLQLAAVLKSPLCNVSETELCELARARTQPLWWRLLEMRGSD 706

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
               +     +++  L   A   +PH     +LG   GR + + R G +  D LDE LN 
Sbjct: 707 SNAGR---AAEWLAGLADRADLATPHTILAEVLGEHGGRARILERLGPDAADPLDEMLNA 763

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            L  EQ    SLQ  +  L +    ++R   +  + VR+MT H AKGL++PVV + D GS
Sbjct: 764 ALTYEQRHPPSLQGFVQWLRRGGAEVRREAESGADAVRLMTAHGAKGLQAPVVIIPDVGS 823

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                   +K                  +        + L+     + + E NRLLYV +
Sbjct: 824 G-----RGEKPLRWEESAPPLPYWAPRSRKDFFAPAWTKLMDAETAAREAEENRLLYVAL 878

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           TRA D+L++C            + +WYD+V       E  + I    +       A
Sbjct: 879 TRAEDRLLVCAWGAPK------EGSWYDLVSQGIGRLEGAEDIPFEPAGFGAPPSA 928


>gi|329920276|ref|ZP_08277060.1| ATP-dependent nuclease subunit A [Lactobacillus iners SPIN 1401G]
 gi|328936321|gb|EGG32769.1| ATP-dependent nuclease subunit A [Lactobacillus iners SPIN 1401G]
          Length = 997

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 154/942 (16%), Positives = 305/942 (32%), Gaps = 128/942 (13%)

Query: 83  NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 96  SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 149

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           K+KN ++DF D+      +L     ++ + R     + + IL+DE QD + +Q ++I+ +
Sbjct: 150 KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 209

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
            E              LF VGD KQSIY F  A+P   L++             +   I 
Sbjct: 210 KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 255

Query: 260 LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316
           L  +FRS+ ++  +V+ +F     EN  G++      +++ +      +GT   +    S
Sbjct: 256 LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 315

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373
             D      +E   +  D +            +   I  +   D    +     KR I+ 
Sbjct: 316 NDDKPSIADEEEEVNDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 365

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            DI +L R + +             + K+ +  +D         +  +    + I + + 
Sbjct: 366 SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 421

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIH 489
           D+  V +++SPL+ F+E +  KI      + + Y+ I  +      +      + I  + 
Sbjct: 422 DIPLVSVMRSPLYGFTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELS 480

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              + +      +    I       +       G +    L+         E + +  L 
Sbjct: 481 HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 540

Query: 549 ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           + I+ +++        +   +     + +++MT+H +KGLE P+VFL+    +       
Sbjct: 541 QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 600

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
               I        G+ I     +  + + S      K    EE  R+LYVG+TRA  +LI
Sbjct: 601 NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 658

Query: 664 ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +       N     Q     ++ +     ++       L   +   +      S    E 
Sbjct: 659 MVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDREL 718

Query: 722 T---------------------------------------------PLEREETIKQLMDE 736
                                                         P +   T       
Sbjct: 719 DKEDKVHYIQVMQLKSQASVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 778

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794
            +I K    P   + +   ++N +       ++  + L          G  +H LLQ   
Sbjct: 779 SEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYD 838

Query: 795 ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848
                      + I +   +N          +L               A    S + Y E
Sbjct: 839 YTIEYSPTNVDDLIENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYRE 896

Query: 849 VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895
           +  S            N     I++ G ID   I    I +F+YKT       +E    +
Sbjct: 897 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 956

Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936
           +   +  QLS+Y   L +   +K +    LI +S  K+  + 
Sbjct: 957 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 997


>gi|325912627|ref|ZP_08175010.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B]
 gi|325478048|gb|EGC81177.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B]
          Length = 1206

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 154/942 (16%), Positives = 307/942 (32%), Gaps = 128/942 (13%)

Query: 83   NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
            +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 305  SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 358

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K+KN ++DF D+      +L     ++ + R     + + IL+DE QD + +Q ++I+ +
Sbjct: 359  KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 418

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             E              LF VGD KQSIY F  A+P   L++             +   I 
Sbjct: 419  KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 464

Query: 260  LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316
            L  +FRS+ ++  +V+ +F     EN  G++      +++ +      +GT   +    S
Sbjct: 465  LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 524

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373
              D      +E   +  D +            +   I  +   D    +     KR I+ 
Sbjct: 525  NDDKPSIADEEEEVNDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 574

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             DI +L R + +             + K+ +  +D         +  +    + I + + 
Sbjct: 575  SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 630

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIH 489
            D+  V +++SPL+ F+E +  KI      + + Y+ I  +      +      + I  + 
Sbjct: 631  DIPLVSVMRSPLYGFTEPEFAKIGIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELS 689

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
               + +      +    I       +       G +    L+         E + +  L 
Sbjct: 690  HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 749

Query: 549  ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + I+ +++        +   +     + +++MT+H +KGLE P+VFL+    +       
Sbjct: 750  QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 809

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                I        G+ I     +  + + S      K    EE  R+LYVG+TRA  +LI
Sbjct: 810  NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 867

Query: 664  ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            +       N     Q     ++ +     ++       L   +  ++      S    E 
Sbjct: 868  MVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDREL 927

Query: 722  T---------------------------------------------PLEREETIKQLMDE 736
                                                          P +   T       
Sbjct: 928  DKEDKVHYIQVMQLKSQASVKISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 987

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794
             +I K    P   + +   ++N +       ++  + L          G  +H LLQ   
Sbjct: 988  SEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYD 1047

Query: 795  ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848
                       + I +   +N          +L  +            A    S + Y E
Sbjct: 1048 YTIEYSPTNVDDLIENLVLQN--KLNPDIIPHLSKNDINWFVTSNFAKAFWEKSDNLYRE 1105

Query: 849  VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895
            +  S            N     I++ G ID   I    I +F+YKT       +E    +
Sbjct: 1106 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 1165

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936
            +   +  QLS+Y   L +   +K +    LI +S  K+  + 
Sbjct: 1166 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 1206


>gi|312875638|ref|ZP_07735639.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b]
 gi|311088892|gb|EFQ47335.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b]
          Length = 1206

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 155/942 (16%), Positives = 304/942 (32%), Gaps = 128/942 (13%)

Query: 83   NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
            +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 305  SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 358

Query: 141  KKKNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K+KN ++DF D+      +L    + S   R     + + IL+DE QD + +Q ++I+ +
Sbjct: 359  KRKNNIIDFNDMEQFAYKILTSDSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 418

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             E              LF VGD KQSIY F  A+P   L++             +   I 
Sbjct: 419  KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 464

Query: 260  LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316
            L  +FRS+ ++  +V+ +F     EN  G++      +++ +      +GT   +    S
Sbjct: 465  LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 524

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373
              D      +E   +  D +            +   I  +   D    +     KR I+ 
Sbjct: 525  NDDKPSITDEEEEVNDLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 574

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             DI +L R + +             + K+ +  +D         +  +    + I + + 
Sbjct: 575  SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 630

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIH 489
            D+  V +++SPL+ F+E +  KI      + + Y+ I  +      +      + I  + 
Sbjct: 631  DIPLVSVMRSPLYGFTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELS 689

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
               + +      +    I       +       G +    L+         E + +  L 
Sbjct: 690  HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 749

Query: 549  ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + I+ +++        +   +     + +++MT+H +KGLE P+VFL+    +       
Sbjct: 750  QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 809

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                I        G+ I     +  + + S      K    EE  R+LYVG+TRA  +LI
Sbjct: 810  NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 867

Query: 664  ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            +       N     Q     ++ +     ++       L   +   +      S    E 
Sbjct: 868  MVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDREL 927

Query: 722  T---------------------------------------------PLEREETIKQLMDE 736
                                                          P +   T       
Sbjct: 928  DKEDKVHYIQVMQLKSQASVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 987

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794
             +I K    P   + +   ++N +       ++  + L          G  +H LLQ   
Sbjct: 988  SEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYD 1047

Query: 795  ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848
                       + I +   +N          +L               A    S + Y E
Sbjct: 1048 YTIEYSPTNVDDLIENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYRE 1105

Query: 849  VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895
            +  S            N     I++ G ID   I    I +F+YKT       +E    +
Sbjct: 1106 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 1165

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936
            +   +  QLS+Y   L +   +K +    LI +S  K+  + 
Sbjct: 1166 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 1206


>gi|113868365|ref|YP_726854.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia
            eutropha H16]
 gi|113527141|emb|CAJ93486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia
            eutropha H16]
          Length = 1200

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 175/1003 (17%), Positives = 335/1003 (33%), Gaps = 105/1003 (10%)

Query: 1    LKNRFGLSL--NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
            L +  G     +   + +  + W      ++        + +T    I      +    +
Sbjct: 231  LSDCLGEDARGDVLLQALSDEGWRDACESLALRLGAAGKTEQTHAARITDALMAITAWRE 290

Query: 59   TQ-----CIEERFSLLSSFFLTQKFTPQKNIITQEINKKS--PDLKEKLKKSQDEFIKIR 111
                     E  F+ L + F T    P+    T  + K +    + + L         + 
Sbjct: 291  AGAAPGKPAERAFAQLRAAFFTTTGGPRSLRRTAALVKAAGGEGMVDALLDEHASICAML 350

Query: 112  DRFNT----YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            D  +       +     A   +   L   Y+  K +   +DF DL      L+   + + 
Sbjct: 351  DDISARCCEAAVLAINRALFCIGDALLTRYQRHKDEQRAMDFADLEWQAARLMSDEETAT 410

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +++ ++D    H+L+DE QDT+ +QW ++    + +  G        T+F VGD KQSIY
Sbjct: 411  YLQVRLDARYRHLLLDEFQDTNPLQWRIL----QGWLAGYAGLGERPTVFLVGDPKQSIY 466

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F  A+ +       + +        + +           A++L  V+ VF         
Sbjct: 467  RFRRADARLFGAAGEMLRDTFGATVLRTNRTRRN-----RAEVLDWVNAVFDTARAEGRY 521

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ--------- 338
               +T T        G  G V L   V  +  ++      +     ++            
Sbjct: 522  PLYATQTTAL----AGGNGPVWLLPLVEPEDKAEDAVDDGAEDKSAEAASAHRDTLLQPR 577

Query: 339  ----ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                +S      RR+A  +  +  T  +   G++R  +  D+ +LVR++          R
Sbjct: 578  RQAGDSLRLEEGRRVAAWLRLVRDTVPVHEGGEQRPARWSDMHLLVRRKTHLADYERALR 637

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                   I  +   R  L   L   DL AL  F+++ E DL    +LKSPL   S+DD+ 
Sbjct: 638  E----AGIPCLSPRRGGLLATLEALDLSALLAFLMTPESDLDLAHVLKSPLVGASDDDLL 693

Query: 455  KICTQRHETETVYEYIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             +     E                    +  ++ + + + +A     HD    I    + 
Sbjct: 694  ALARIEGEGGWWARIESGGLPEHVSDALREGVQRLRQWLRVAPHRPVHDLIDQIFHGGEV 753

Query: 514  RQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
            R+++          +V+  LD FL  +L  +   Y SL + I EL++     +       
Sbjct: 754  RRRYAEAAPPDIREQVLANLDAFLKLSLDLDGGRYPSLPKFIDELQEIRRGDEGESPDEG 813

Query: 570  ---------------------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                                 + V I+TVH AKGLE+P V L+D      +      +  
Sbjct: 814  GMGESAEDVEPAEDDSAFAGLDAVHILTVHAAKGLEAPFVVLLDANHSEPAADRGGILVD 873

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             P  +  P       +   R    + L +      + E   LLYV MTRA   L++    
Sbjct: 874  WPPSSPVPRHFSAYGKRSERGLARAPLFEAEAALGERENWNLLYVAMTRAQQGLLVSGVK 933

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
              ++   S +                   ++L  +   +   AY       E    + + 
Sbjct: 934  GRASRSGSGE---------GNAEIAGSWYVRLQAAGVGEMVPAYP-----GELADAQDQA 979

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
             +   + E           ++ ++    +             + ++ +      G ++H 
Sbjct: 980  PMPARLSEPVRFTDFRLRYRDAVDARQGIGFEEEGEAEDEP-DGIVFNAAAARHGELVHA 1038

Query: 789  LLQVIFTLPEHKRK----NFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
            LL+ +   PE        + +  +       T  A+    ++    L ++  +L  P + 
Sbjct: 1039 LLERLTRYPEAFAGVPGIDTVLRWFPLTGAHTGAARQAWRQQVAQALEAVAAMLRAPALA 1098

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
              +            ++   +  ++   RID++      + I +YK    +PQE E    
Sbjct: 1099 PLLGAGDARSARNEVELYDARGRLL---RIDRLVEFDDRVVIVDYKL-RLLPQEHE---- 1150

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
             + AQL  Y   L   +P K +      V+      IP  +L 
Sbjct: 1151 AYRAQLGRYAAALAPMFPGKRIEAG---VATADGEWIPAERLA 1190


>gi|291538110|emb|CBL11221.1| recombination helicase AddA, Firmicutes type [Roseburia intestinalis
            XB6B4]
          Length = 1237

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 151/1016 (14%), Positives = 310/1016 (30%), Gaps = 146/1016 (14%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ----KFTPQKNIITQEINKKSPD 95
                   LKK + +  +       + +  LS   L          +K  + +++ +   D
Sbjct: 248  AKALEGDLKKYKEIAASESFADFYQNYRNLSYDRLASSRGFDGNEEKLELVKKLREMGKD 307

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
              +K+ +               K        + L    +  +   K++  ++DF DL   
Sbjct: 308  AVKKINRQYFFTSPEIMAEQMKKTAPMAAELVRLTLEFDETFTAEKRRKNLVDFHDLEHF 367

Query: 156  TNDLLKKRDVSA--WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
              ++    +         +       I+IDE QD++ +Q  ++R+++ +           
Sbjct: 368  ALNIFVDEETGKIKKTAEEFRDNFKEIMIDEYQDSNEVQETILRAISRE-------ERGE 420

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              LF VGD KQSIY F  A P+  + +             K   I+L  +FRS  ++L  
Sbjct: 421  YNLFMVGDVKQSIYRFRLARPELFMEKYDTYS----LTDAKMQRIDLHKNFRSRNEVLDF 476

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + +F         + +             Q  T     +++                  
Sbjct: 477  SNDIFYRIMKRDLGNVEYDADAALYPGASYQEETDMFTPEILLVDGDD---------ELL 527

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITF 391
            D    +    + AR IA  I  ++GT  +     G+ R +Q  D+++L+R          
Sbjct: 528  DDAAADDKKLLEARMIAKRIKELMGTQKVTDKATGELRPVQYSDMVILLRSLSG---YAD 584

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                + ND  I             + ++ ++++ R + +   D+    +L+SP+   S++
Sbjct: 585  RFAVVLNDAGIPAHTVSATGYFSTVEVQTVLSMLRILDNPRQDIPLTAVLRSPIAGLSDE 644

Query: 452  DIFKICTQRHE--------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
            ++ K+  +  +               +   E   +  +    K         +L  +   
Sbjct: 645  ELAKLRLKDKDVRFYECVLEECERLKQEAEENPGQGRDDSEEKLYRFYVTYEKLRQLVPD 704

Query: 498  CSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
               H+   L+L          +   G+     L   +   +  E  SY  L   +  +++
Sbjct: 705  TPIHELIELLLKETGYGDYAAAMPAGDRRHANLLMLVEKAIAYENTSYKGLFHFVRYIDE 764

Query: 557  YPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                            N N VRIM++H +KGLE PVVF    G          ++ + P 
Sbjct: 765  LQKYDVDFGEADLIGENENVVRIMSIHKSKGLEFPVVFAAGMGKNFNRQDTRSRLVLHPE 824

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            L           + KS       + K +      E  R+LYV +TRA ++LI+      +
Sbjct: 825  LGIGLDYMDGKQRVKSVTIAKRAIAKQIDMENLGEELRVLYVALTRAKEKLILTGSLKKA 884

Query: 672  NE----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
             E                 + +   + D +  +  + +   +I+L  +    +       
Sbjct: 885  EETLSYIKAFPEELLSYLGRESAAGYLDWILPAAASYQDKYQIRLMRAAELVQEELETQI 944

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                  +    +         Q+  ++       + +       S  + K +   E+   
Sbjct: 945  KDDWNRSACMEKAAQADEKKVQQFSERFHRRYAYENDVQRKNKYSVSELKHRAMREAFEK 1004

Query: 776  DNQT------------------------------FNRGLIIHKLLQVIFTLPEHKRKNFI 805
            + +                                 RG  +H++++          K  +
Sbjct: 1005 EEEAVPVFQSEEVVPYVPAFAREIEQQSEDASPGALRGTAMHRIMECYQFSSGVSAKEQV 1064

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINCP--- 858
                 K            +   +   +   +     +       Y E             
Sbjct: 1065 AGMLEKEQITPEMHGLIRIP-QVEYFVNADIGKRMGAAEKDGKLYREKPFVMGFTDEQLD 1123

Query: 859  ------------------------------KKDIIISGRIDQISISQQNIFIFEYKTHHH 888
                                          K+  +I G ID   I +  I + +YKT   
Sbjct: 1124 EFGFAENTEQAEKVKSMGRVGNIGETEYTGKELTLIQGIIDVFWIEKDGIVLLDYKTDRV 1183

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNK--------SLVCLLIY-VSEPKVFII 935
                 + +   + AQL +YE+ L   Y N+         +   L+Y     KV  +
Sbjct: 1184 --DTEKELSERYAAQLKLYEEALNRVYENEKDAAGNPLKVKEKLLYSFRLGKVIPV 1237


>gi|73663117|ref|YP_301898.1| putative ATP-dependent nuclease subunit A [Staphylococcus
            saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123642147|sp|Q49WA6|ADDA_STAS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|72495632|dbj|BAE18953.1| putative ATP-dependent nuclease subunit A [Staphylococcus
            saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1219

 Score =  353 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 143/998 (14%), Positives = 319/998 (31%), Gaps = 137/998 (13%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91
             ++++ +ME G     K A+   ++      ++            +         ++   
Sbjct: 258  RRFLAEAMEGGLLNTQKIAEHQFESRFPAKNKKIKEA-------NEMMIDAYDDGKKHYD 310

Query: 92   KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
                L  K+++          + +  ++         +   +   + + K+   +LDF D
Sbjct: 311  DYKALVSKVQEDYFSREAADLKTDMQRLAPRVAYLAQVTADVIEQFNQKKRSRNLLDFSD 370

Query: 152  LIINTNDLLKK-RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
                   +L       + I     ++   IL+DE QDT+ +Q ++I  +           
Sbjct: 371  YEHFALRILMDSNGNPSEIADMYRKQFEEILVDEYQDTNRVQEKIIACIKR-------GD 423

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
             +   LF VGD KQSIY F  A+P   + +        +  G     I+L  +FRS  ++
Sbjct: 424  EADGNLFMVGDVKQSIYKFRQADPSLFIGKYNRFTLDGSEHG---MRIDLSQNFRSREEV 480

Query: 271  LTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            LT  + +F     E    +  D    + + +    +   VQL   +              
Sbjct: 481  LTTTNYLFKHMMDEAVGEIVYDDAAQLYYGAPFDHKPHDVQLNMLIE------------- 527

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDT 386
                 D+    + +   A  I   +  ++    I+     + R    KDI++L R     
Sbjct: 528  -----DASSDLNGSEQEAEYIVQQVEKIMSQHEIYDIKTEQYRKPSYKDIVILERSYGQA 582

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
              I    +    D+ I    N +    +   ++ +++  R I +   D+  V +++S ++
Sbjct: 583  RKIQQAFK----DHNIPFHVNSKEGYFEQTEVQLILSFLRTIDNPLQDIYLVGLMRSVIY 638

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSP 500
             F+ED++  I       +  Y+ I+ +    ++      K    ++ I +    +Q    
Sbjct: 639  QFTEDELSNIRVFSPNDDYFYQSIKHYMANDVANKKLVAKLASFLEDIEQYQDYSQSHPV 698

Query: 501  HDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
            +             Q F    G +     L    N  +  E +S+  L + I  +++   
Sbjct: 699  YQLIDKFYNDHYVIQYFSGIIGGKGRRANLYGLFNKAVEFENSSFRGLYQFIRFIDELIE 758

Query: 560  TIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
              K     N      + VR+MT+H++KGLE P V       +       + + +  S   
Sbjct: 759  RGKDFGEENIVGPNDDVVRMMTIHSSKGLEFPFVIYSGLSRKFRRDDLHRPVILNQSYGL 818

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                          +          +K    E  RL+YV +TRA +QL +          
Sbjct: 819  GMAYYDVESNLSYPSLSSVTYKAIAEKEMVSEEMRLIYVALTRAKEQLFLIGRVKDEKTL 878

Query: 675  KSNQR--------------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
               ++                         +   + +     +++   +I   +     +
Sbjct: 879  SQFEQVSVSESHLPVSYRITAQRPIDMIYPILAKYQSSSLPNELRFEQTIEDVDQAMRPY 938

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKK-------------------LFSPIKNDINEPY 755
               + +       ET+  + +++ +                         P ++ I +P 
Sbjct: 939  VQLNTDFYEDIASETVTDVSEQRTVADIEMNHSKNEALQAQIHNQLSYEYPYQSAIEKPS 998

Query: 756  ILNPSTID-----------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
              + S +                        +  +    S     +    G ++H ++Q 
Sbjct: 999  KQSVSELKRQHETEQSDTNYDRVRQYRIGSTSYERPAFLSRSKQRKANEIGTLMHTVMQH 1058

Query: 793  IFTLPEHKRKNFITSYCTKNA--KLWPAKEYKNLL-LSITRLLENPMMTTAM-SCDSYSE 848
            +    +   +  +           + P    +++    I   + + +      S + Y E
Sbjct: 1059 LPFNKDRLTEEDVNRLVDHLIAQHIIPEDAKQDIRFDDIYNFIASDLYQLIAESDEIYRE 1118

Query: 849  VSVSGKIN-------CPKKDIIISGRIDQISISQQNIFIFEYKTH-----HHVPQEI--E 894
            +      N         +   II G ID I + +   +  +YKT       ++  E    
Sbjct: 1119 LPFVVNQNEVDHNKHSEEDASIIQGMIDLIFVKEGQYYFVDYKTDAFNRRRNMSDEEIGA 1178

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
             +   +  Q++ Y   L+       +   L +    ++
Sbjct: 1179 QLRERYKVQMNHYRNTLETILKTD-VKGFLYFFKFGQL 1215


>gi|229825742|ref|ZP_04451811.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC
            49176]
 gi|229790305|gb|EEP26419.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC
            49176]
          Length = 1183

 Score =  353 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 150/930 (16%), Positives = 301/930 (32%), Gaps = 102/930 (10%)

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK--MFKSTLASLTLAKY 132
            T     +K  + + I     +   KLK+  D   +  +     +          + L + 
Sbjct: 290  TVDVDEEKKELAKSIRDGYKESFNKLKE--DFLSENVEEIEASRKVTAGVLKELIRLVRK 347

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLI 191
             +  Y E K K  +LD  D       +L   +    +  K   ++   I+IDE QD++L+
Sbjct: 348  FDKAYIEEKNKRNMLDISDWAHLALKVLLDEEGKPSVAAKAYKEQFAEIMIDEYQDSNLL 407

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q +++ S++ +             +F VGD KQSIY F  A+P+  + +     +R    
Sbjct: 408  QEKILTSISREA-------DGQPNIFMVGDVKQSIYKFRQAKPELFIEKYNKYSQR---- 456

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
              K   I+L  +FRS  +++  V+ VF                 R    R  ++      
Sbjct: 457  -NKGKRIDLHSNFRSGPEVIDSVNAVFERTMTESLGGIVYDEAARLVKGRDDKLQNELNK 515

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +++    S   P+          L + S   + A  +A  I  ++             +
Sbjct: 516  TEILLFDKSNEIPE---------ELLKLSDIELEAYMVAGRIKRLMVEKE--------GL 558

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  +I +L+R   +        R +     I  +            ++ +++L + + + 
Sbjct: 559  KYSNIAILLRTNVEWA---ESFRRILISEGIPAICESSVGYFSAWEVQVMISLLKILDNP 615

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
              DL    +L SP+  F E ++ ++    ++ E ++            K    I + +E 
Sbjct: 616  HQDLPLGTVLLSPIGGFDEQELAELRINSNKDEDLWTI---LNLSENEKSLKFINWFNEQ 672

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                 F   H+    +           +   G      LD  +      E  S   +   
Sbjct: 673  RSKLIFTPVHELIKELYEESNFYSYVRAMPSGETRAANLDMLVYKAKAYEATSLHGVVHF 732

Query: 551  ISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  +++   Y      A +     VRI+++H +KGL+ PVVF+      + +      M 
Sbjct: 733  VRYIDKLRKYEVDFGEAGAGGAEAVRILSIHKSKGLQYPVVFVSGMAKSMNNQDSRASMV 792

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            I   L           + K    +   L   ++     E  RLLYV MTRA D+L++   
Sbjct: 793  IQAELGIGIDYFNIETREKKTTILKKMLAGKIRLENVAEEIRLLYVAMTRAEDKLLLTAG 852

Query: 668  SNTSNEKKSNQRTWYD------------------------------MVYDSFHNDERVKK 697
                 +K  +                                     V  +    +    
Sbjct: 853  LEDVEDKLVSWEHDEQGYMSLSKANSLLDFAMPALIKEKNEGRLTIAVQCAKELVDSKMD 912

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
                  + + +      S   P+     +E   ++        + +    K  ++E   L
Sbjct: 913  EAAEKEVLESDITKLISSLPEPDGYEAIKEMISREKDYIYPFKEAVELKSKMTVSEIKRL 972

Query: 758  ---------NPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                         +  K     E            + +   RG + H +L  +       
Sbjct: 973  HLEEEEIGEAVYNLPHKEAPEFEPYIPDFMSKEPEETKGAARGTLYHSILSRMDFGNISG 1032

Query: 801  RKNFIT--SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT----AMSCDSYSEVSVS-- 852
            ++ F    +    + K+   +     L    +  E+ +        ++   Y E      
Sbjct: 1033 KETFKDYIAKLNIDKKITNEELSSIDLRHFAKFFESNLYKRMRQAFLNSKLYREAPFVIG 1092

Query: 853  --GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH-VPQEIEHIPYTHIAQLSIYEK 909
               +IN  K+ +++ G ID      +++ + +YKT      Q  E +   +  QL  Y +
Sbjct: 1093 IDREINTEKETVLVQGIIDAWFTENEDVILVDYKTDRVYGKQGEEELIRRYKLQLDNYAE 1152

Query: 910  ILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
             L           L+   +  K  +I   K
Sbjct: 1153 ALSRITGKMPKEKLIYSFALGKEILIEDEK 1182


>gi|306833181|ref|ZP_07466311.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338]
 gi|304424755|gb|EFM27891.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338]
          Length = 1210

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 152/1001 (15%), Positives = 329/1001 (32%), Gaps = 138/1001 (13%)

Query: 26   FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
              V+D+  Y   +   G PT     + L      +   + F  L      +    +    
Sbjct: 255  QDVTDLEDYKQKT-AKGTPTA-NYKKHLNIIEHLREWAQHFETLYG----RDGLGRLATD 308

Query: 86   TQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTYKMFKSTLASL----TLAKYLNA 135
              ++    P +          K  Q     ++     +K    +L  L       +  + 
Sbjct: 309  VAKLLPAGPAVTVAGTKYPVFKTLQGRLTGLKHLETIFKYQPESLPLLELLQAFMQDFSE 368

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y +AK +    +F D+      +L++    A IR     + + +++DE QD +  Q  +
Sbjct: 369  QYLQAKIQENAFEFSDIAHFAIQILEEN---ADIRELYQNKYHEVMVDEYQDNNHTQERM 425

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +  L           S+    F VGD KQSIY F  A+P+   ++ +  Q+   +     
Sbjct: 426  LELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPDH----G 470

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             +I L  +FRS +++L   + +F+   +          T +  +    Q       E   
Sbjct: 471  KLILLKENFRSQSEVLDATNSIFTHLMDEAVGEILYDDTHQLVAGSPAQK------ESHP 524

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                       ++ +       +        + +A  I  +   +          +  +D
Sbjct: 525  ENKTQVLIYDIDNNSDLPSDAEEGQINPNEVKLVAKEIIRLHNEEH---------VAFED 575

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            I +LV  R                Y I  V           + +  ++   R + +  +D
Sbjct: 576  ITLLVSSRTR----NDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLND 631

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--------------ISK 480
             + V +++SP+F+F+ED++ ++  Q  E +      QK  +                  K
Sbjct: 632  YALVALMRSPMFSFNEDELARLALQTTEDDHRANLYQKLEHALAGKGSHNELMTITLHDK 691

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539
                +         A++ + +D    I   +       +     +    L          
Sbjct: 692  LADFMACFVAWREFAKWHALYDLIWKIYNDRFYYDYVGNLPRAEQRQANLYALALRANNF 751

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGS 595
            E+  +  L   I  +++   +             N V +MT+H +KGLE   VF+++   
Sbjct: 752  ERTGFKGLSRFICMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLEFKYVFILNIDK 811

Query: 596  QVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            +      +  + +                          +            + L+ +T 
Sbjct: 812  KFSIQDLMSPLILSRQNGAGIKYLADMKEELETDVFPTVKVSMDTLPYQLNKRELRLATL 871

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDS 688
             E  RL YV MTRA  +L +   +++                   ++ N  T+ D V   
Sbjct: 872  SEQMRLFYVAMTRAEKKLYLVGKASSEKLVDKYSGKSENDHLPVAERENFMTFQDWVLAI 931

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWS-------THHPENTPLEREETIKQLMDEQKIPK 741
            +    +       + + +++    +             + T   + E I + +D  +  +
Sbjct: 932  YEAYSKENLPFAVDFVTEEDLTDDKIGKIEVTSVITPDDLTDNRQSENITEALDRLEAVE 991

Query: 742  KLFSPIKNDINEPYILNPSTI----------------------DTKGKTNLESLLSDNQT 779
            KL +     IN P +  PS +                          +    S  +  + 
Sbjct: 992  KLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVDVMTKAYQAQPTFELPDFSKKAKIEA 1051

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
               G  +H+L+Q I    +    +   +    +A+     + +  L ++    EN  +  
Sbjct: 1052 TAIGSAMHELMQRIPLSKQVTIADITAALAQVSAE--DEVKARIRLENVLAFFENSELGQ 1109

Query: 840  AMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
             +   +   Y E   +   +    K+  ++ G +D   +    I +F+YKT  +  +  E
Sbjct: 1110 LIQQHTDKIYREAPFAMLKEDPDSKEKFVVRGIVDGYLVLDDRIVLFDYKTDKY--KNSE 1167

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I   +  Q+++Y + L  SY  K++   L+ +   ++ ++
Sbjct: 1168 EIKERYQGQMALYAEALSKSYDRKNVDKYLVLLGGEQLEVV 1208


>gi|238916498|ref|YP_002930015.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
            eligens ATCC 27750]
 gi|238871858|gb|ACR71568.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
            eligens ATCC 27750]
          Length = 1220

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 149/948 (15%), Positives = 296/948 (31%), Gaps = 127/948 (13%)

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
             P      +   K   D   +L              +           L +AK       
Sbjct: 289  DPDIKEYVKGQRKLFKDYIGRLNDKIFLKDDEGIFADMQGAGIQIRTLLKVAKVYAKRVS 348

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWE 194
            E K++  ++DF D+      +L K++    +      K+      ILIDE QD++ +Q  
Sbjct: 349  EVKREKGIIDFNDMEHLALSILVKKEDGKLVYTETADKLANRFEEILIDEYQDSNQLQEV 408

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++ ++++    G+        ++ VGD KQSIY F  A P+  + +     +   N    
Sbjct: 409  ILNAVSKTRLSGE-----NNNIYMVGDVKQSIYKFRLACPELFIEKYDTYGETGDNV--- 460

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
               IEL  +FRS  ++L   + VFS   N          ++R  +            E  
Sbjct: 461  --RIELQKNFRSRENVLECANDVFSHIMNKNFSGIGYDESVRLNAGFP-------YPEYS 511

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD---TIFSNGKKRVI 371
             S +  + N   +      ++  + ++  + A R+A  I  ++ +            R  
Sbjct: 512  DSNYGDEANKSTDVILISSENEEEATTRELEADRLAKLIEGIVSSGVNVYDADENIYRPA 571

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            + +DI++L R                 D  I    +          I+ ++++   + + 
Sbjct: 572  EYRDIVILTRSVTGWA---DTFADALMDRGIPAYTDSSTGYFSVREIQVILSMLTIVDNP 628

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKI------CTQRHETETVYEYIQKFA----------- 474
              ++S    + S    F+  ++  +         ++    +YE+++  A           
Sbjct: 629  VQEISLAAAMMSYFGGFTAAELGMVRKLGREHADKNTHNNLYEHLKAVAVLGGAGKMQES 688

Query: 475  --NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDE 531
                   K    +  + E    +   S +D    ++              G +    L+ 
Sbjct: 689  DVKQLSGKCALFLAKLTEYRDKSSVESLYDLCWEMIYDSGYYDYVGTMPAGAQRQANLNV 748

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESP 586
             L       ++SYS L   +  +E+     +          N N VRIM++H +KGLE P
Sbjct: 749  LLERAAGYGKSSYSGLFNFLRYIERLKKFDEDFAEGAASLDNENLVRIMSIHKSKGLEFP 808

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L      +        + +  +L           ++K+   I   + + + + +  E
Sbjct: 809  IVILAGAHKSINFMDATAPVLVDQNLGIAVDYVDLERRTKTPTIIKGAMARRIVRESIAE 868

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEK---------------------KSNQRTWYDMV 685
              RLLYV MTRA ++LII      +++                        N + + DM+
Sbjct: 869  EERLLYVAMTRAREKLIITGVVKDADKTLDKYMGRAEQLAADGMLSFADSENIKNYLDMI 928

Query: 686  YDSFHNDERVKKIKL---TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                  D    K       ++       A+E      E   +   E   + M+    P  
Sbjct: 929  MPVCLMDSDKLKGSFKVMVDAGEDSWVDAFEAGEMAGEANAVRIGELADENMEAVSYPLL 988

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF---------------------- 780
               P     +        T+        +    +N                         
Sbjct: 989  DELPEYVPDDNAARRMKLTVSQLKAMQADDDSEENAYMDESVKTALKKEACDETNSIIPK 1048

Query: 781  ------------NRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                         RG   H++++ +    ++     K  I              + K++ 
Sbjct: 1049 FISGEEVQLAANERGSAYHRVMECLDYSVSVNLDGVKADINRMLET--GKMNELQVKSVN 1106

Query: 826  LS-ITRLLENPMMTTAMSC----DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI 880
               I   +++       +         E           +  +I G ID          +
Sbjct: 1107 PWDINTFVQSDTGRRVANAVNCGSVRREQPFV----FEYEGQLIQGIIDLYFEEDGEFVL 1162

Query: 881  FEYKTHHHVPQE--IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             +YKT   +  E   + +   +  QL  Y K L      K +   +IY
Sbjct: 1163 VDYKTDRVMKGEAGEKELVRRYAIQLDYYAKALTQL-TGKKVKEKIIY 1209


>gi|309803999|ref|ZP_07698081.1| ATP-dependent nuclease subunit A [Lactobacillus iners LactinV 11V1-d]
 gi|308163918|gb|EFO66183.1| ATP-dependent nuclease subunit A [Lactobacillus iners LactinV 11V1-d]
          Length = 1144

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 154/942 (16%), Positives = 304/942 (32%), Gaps = 128/942 (13%)

Query: 83   NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
            +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 243  SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 296

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K+KN ++DF D+      +L     ++ + R     + + IL+DE QD + +Q ++I+ +
Sbjct: 297  KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 356

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             E              LF VGD KQSIY F  A+P   L++             +   I 
Sbjct: 357  KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 402

Query: 260  LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVS 316
            L  +FRS+ ++  +V+ +F     EN  G++      +++ +      +GT   +    S
Sbjct: 403  LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTS 462

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQA 373
              D      +E   +  D +            +   I  +   D    +     KR I+ 
Sbjct: 463  NDDKPSIADEEEEVNNLDEIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKF 512

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             DI +L R + +             + K+ +  +D         +  +    + I + + 
Sbjct: 513  SDIAILTRTKSE----NLKLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQ 568

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIH 489
            D+  V +++SPL+ F+E +  KI      + + Y+ I  +      +      + I  + 
Sbjct: 569  DIPLVSVMRSPLYGFTEPEFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELS 627

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
               + +      +    I       +       G +    L+         E + +  L 
Sbjct: 628  HFRNFSIDHRISELICDIFQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLY 687

Query: 549  ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + I+ +++        +   +     + +++MT+H +KGLE P+VFL+    +       
Sbjct: 688  QFINFIKRMQKNKYDFSQPLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTT 747

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                I        G+ I     +  + + S      K    EE  R+LYVG+TRA  +LI
Sbjct: 748  NNYVITTKS--GLGLTITTADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLI 805

Query: 664  ICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            +       N     Q     ++ +     ++       L   +   +      S    E 
Sbjct: 806  MVSTMANENIIPDFQNKLDAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDREL 865

Query: 722  T---------------------------------------------PLEREETIKQLMDE 736
                                                          P +   T       
Sbjct: 866  DKEDKVHYIQVMQLKSQASVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAV 925

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794
             +I K    P   + +   ++N +       ++  + L          G  +H LLQ   
Sbjct: 926  SEIKKAFEYPNDKESDNSKLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYD 985

Query: 795  ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSE 848
                         I +   +N          +L               A    S + Y E
Sbjct: 986  YTIEYSPTNVDYLIENLVLQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWGKSDNLYRE 1043

Query: 849  VSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----H 895
            +  S            N     I++ G ID   I    I +F+YKT       +E    +
Sbjct: 1044 IEFSSLISANNLFHNFNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINN 1103

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIP 936
            +   +  QLS+Y   L +   +K +    LI +S  K+  + 
Sbjct: 1104 LKKKYAGQLSLYASALNNL-SDKKVKAKYLILLSINKIVKVD 1144


>gi|329667337|gb|AEB93285.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 1142

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 158/981 (16%), Positives = 307/981 (31%), Gaps = 126/981 (12%)

Query: 52   TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----------DLKEKLK 101
             L+Q       +  ++ + +  +  KF        +   +             DL ++LK
Sbjct: 192  RLEQFLNALEDDHSYNEIRASLMNCKFEKNIRKSKKWSEESLETYQESQKLKSDLNDQLK 251

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLAKY---LNAHYEEAKKKNCVLDFEDLIINTND 158
            K    F  + ++     + KS     T+      L   + + K++  ++D+ D+      
Sbjct: 252  KIFANFFVVEEKEQVNILKKSEKLVKTIVDAEKKLIKRFGQLKREQNLIDYSDMEQFAFS 311

Query: 159  LLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            +L     +A I +    ++ N ILIDE QD + +Q  +I ++                LF
Sbjct: 312  ILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIAAI---------KKKGQNNLF 362

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGD KQSIY F  A P   L +                 I L  +FRST  +   V+ +
Sbjct: 363  MVGDIKQSIYGFRQARPDLFLSKYHAY-----GQNDDSEKIVLSDNFRSTKRVTKTVNSL 417

Query: 278  FSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            F+     N  G+       ++  ++          +   +          ++   + F+ 
Sbjct: 418  FNPILTANFGGIDYKKEGQLQFGATY---------YPTDLPTASEYIFTDKKQTQASFEE 468

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFL 392
               +       + +   I  +   +    + K   +R ++  DI ++ R R D       
Sbjct: 469  NFGDEMDFSEIQMVIARIKQLKEENFQVWDRKTQLRRPLEYSDIAIITRTRSD----NLQ 524

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                     + +   D         +  +M   R I + + D+  V +L+SPLFNF E +
Sbjct: 525  VMQEFAKADLPLFVTDAQNYFQTFELVMIMNYLRLIDNPQQDIPLVAVLRSPLFNFKEPE 584

Query: 453  IFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            + +I  +                 +    K ++ ++ +  L   A      +    I   
Sbjct: 585  LAQIRVKTRSGNFYNALTSFASVNSDLGQKCKNFLQQLESLRSFAATHRISELIWSIYER 644

Query: 511  KKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRA 564
                +       G +    L+         E   +  L + IS +E+             
Sbjct: 645  THLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFIERMRKNQKDLAQPLL 704

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                   V++MT+H +KGLE PVVF++  G +  +        I     D  G+ I    
Sbjct: 705  SDKADKAVKLMTIHASKGLEFPVVFVMGLGHKYQTRDLSGNFTI---SKDGLGLTIKEKD 761

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
             +  + + S      ++   EE  R+LYVG+TRA  +LI+    +    K+    +  D 
Sbjct: 762  YRIDSLVKSLADVEKRQQMLEEEARILYVGLTRAQQKLILVASVSEMEAKQKKWESEIDQ 821

Query: 685  -----------------------VYDSFHNDERVKKIKLTNSINK----------DEWIA 711
                                   +      D+ ++ + L                 +   
Sbjct: 822  KTNILPLIRKINAQSPLDFLGPKLEQKHEFDQTIEDMTLALEEQDKIYYLKFAVQSDIEE 881

Query: 712  YEWSTHHPE----------------NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             +      +                  P              +I K    P+  ++    
Sbjct: 882  KDEQKDDTQKLSTKMNDVVKTLYNFEYPFSDATKTTAYQSVSEIKKVFNDPMDTELENSR 941

Query: 756  ILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-N 812
            +++ S   +    +T +            G  +H +LQ      +  + N          
Sbjct: 942  LISSSNRYLQPIDETPVFLEKQKFTGAEIGTAMHLVLQYYDYQGDKTKLNLDKEIEELVE 1001

Query: 813  AKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINCPKK 860
                      +L                        + E   S            +    
Sbjct: 1002 LGKLNPLMVPHLSKEALNWFVMSEFAAEFWQKPEKLHRESQFSSLVNASELFNDFSDSAA 1061

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYP 916
             I++ G ID    + + + +F+YKT        E     I   +  QL +YE+ L +   
Sbjct: 1062 KILVHGTIDGYFETDEGLILFDYKTDFVDKTHEEQAIDKIKQKYTGQLRLYEQALNEISE 1121

Query: 917  NKSL-VCLLIYVSEPKVFIIP 936
            NK +    LI +   KV  + 
Sbjct: 1122 NKKVIGKYLILLDARKVVPVD 1142


>gi|116490406|ref|YP_809950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni
            PSU-1]
 gi|122277405|sp|Q04GY7|ADDA_OENOB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|116091131|gb|ABJ56285.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni
            PSU-1]
          Length = 1186

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 153/924 (16%), Positives = 306/924 (33%), Gaps = 116/924 (12%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +   K++ D    ++       + +    + K        + L K     +   K++  +
Sbjct: 300  KPWIKEAKDSYRSIESDFLFLNESQWLDISEKSLGVVEELIRLTKVFRKKFALKKRELSL 359

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            LDF D       +L+       +R +I    + +L+DE QD + +Q  ++          
Sbjct: 360  LDFSDGEQFAYQILQN----QTVREEIQSLFDEVLVDEYQDINDLQENIL---------- 405

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                S+    F VGD KQSIY F  A+P     +    ++     G    +IEL  ++RS
Sbjct: 406  -TDVSNGSNFFMVGDLKQSIYGFRQADPVNFSNKYIQYKE-----GNGGELIELSENYRS 459

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              ++    + VF    + +    D    +  +++                   +  +   
Sbjct: 460  QHNVADFTNAVFRKLMDRKLGGIDYRGDVELKAANRDYP----------KNLKNVADISI 509

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRK 384
                   +     +S       IA  I  ++G   I+   +GK R +  +DI +L R   
Sbjct: 510  FDIDEESNEDEDFNSRQAQIEIIAAKIQALVGQSEIYDRQSGKMRPLVYRDITILERSHS 569

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                     + +   Y I +             +  +++  + I +   D+  V +L+SP
Sbjct: 570  ----WENDIQTIFKKYHIPINVAAG-NFLQEFEVSIVLSFLKIIDNPHQDIPLVAVLRSP 624

Query: 445  LFNFSEDDIFKICTQRHETETVYE----YIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            ++   E+ + +I T   + +                   K    +  +     IA     
Sbjct: 625  IYGLDENQLAEIRTADMKHDYFSALQAYAKTGQDLDLQKKMAAFLVQLENYREIAADNQI 684

Query: 501  HDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--Y 557
             D    I       +       G++    L     +  +   N +  L   I  +EQ   
Sbjct: 685  VDLIWQIYNDTNWPEYVAGMVGGSQRQANLHALYQYAQQLSDNHFVGLFSFIRYVEQLMD 744

Query: 558  PPTIKRAHSAN--HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                      +     V +MT+H AKGLE P+VFL++   Q+ +      M +       
Sbjct: 745  SVEDFAQAPVDMGQEAVSVMTIHAAKGLEFPIVFLLNLDKQIDNRDSNGAMVVDFDNGIG 804

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-- 673
                    Q K        + + +K+    E  RLLYV +TRA  +L +   S   ++  
Sbjct: 805  IDFVHPTSQVKIPTIQKIAVAEKIKEKNWAEEMRLLYVALTRAEQRLYLVGSSKRMSDLI 864

Query: 674  -----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE-------- 708
                              +   +++   +  S  N   +K  K+  + +K +        
Sbjct: 865  HNWGTPVSIGKKVIAFQDRMRAKSYQSWIGMSLANSGYIKLDKVEGNYSKKDLTFKIESY 924

Query: 709  --WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                  +   +  +    E+EET   L   +KI      P K +       N S +    
Sbjct: 925  NAQTIPKIVENKAKIKQNEQEETGIDLARSKKILD-YNYPYKIESELAAYHNVSELKRVF 983

Query: 767  KTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIFTLPEHKR 801
            +     L+ +                           + ++G   H +L+ I    +   
Sbjct: 984  EDPDSLLMPEMNSDRQPQITELPEPKFIGGNDQEQVSSTDKGTATHLILEKI-DWKKEID 1042

Query: 802  KNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCP 858
            K+++     +N  +   K  +++ L  I     +   T      S    E + +  I   
Sbjct: 1043 KDYLQQLIKEN--IPDQKTRQSIELDRIIWFANSEFGTEIKKSASTLKREQTFAMLIPAK 1100

Query: 859  K--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
            +          +++ G ID   IS   I +F+YKT       +  +   +  QL++Y   
Sbjct: 1101 QIYQQVETSDPVLVHGIIDGYFISDGLITLFDYKTDRFGKDYVSKLKERYSGQLNLYAAA 1160

Query: 911  LKDSYPNKSL-VCLLIYVSEPKVF 933
            L   YPN  +   +++ +   ++ 
Sbjct: 1161 LSSIYPNLKVERKVVVGLQGKRLI 1184


>gi|58337450|ref|YP_194035.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus NCFM]
 gi|75357583|sp|Q5FJX0|ADDA_LACAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|58254767|gb|AAV43004.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus NCFM]
          Length = 1207

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 161/982 (16%), Positives = 303/982 (30%), Gaps = 129/982 (13%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
                 A +     ++   L      +    +     ++I +   + ++   +++ +   I
Sbjct: 257  DKFIDAIKNDEDYDQQRNLLRLCKFEVKYRKSAKWDEDIQEFYAETQKLKSEAKSQIFDI 316

Query: 111  RDRFNTYKMFKSTL----------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
               F      + T           A       L   + E K+    LD+ D+      +L
Sbjct: 317  FTAFYATDEKEQTRIMQESQKIVSAISKAELALIDRFNELKRNENFLDYSDMEQLAYQIL 376

Query: 161  K-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
                  S   R     +   ILIDE QD + +Q  +I+ +          ++   TLF V
Sbjct: 377  SADTSNSQMAREFYQNKFKEILIDEYQDINALQERIIQQV---------KNTDKNTLFMV 427

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD KQSIY F  AEP   L++                 I L  +FRST  +   V+++F 
Sbjct: 428  GDVKQSIYGFRQAEPSLFLKKYHGFASEENKHE---KRILLSDNFRSTEPVTKTVNQLFK 484

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
               ++     D +   +           +    +++     +      +   + +     
Sbjct: 485  SILSSDFGGIDYSKEGQLIFGAKYYPDALPKASEIIVHKKQKDIDNDNNGIDFSEV---- 540

Query: 340  SSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                     +   I  +        +   G+ R ++  DI +L R   D           
Sbjct: 541  -------EMVLARIKQLKKEHFQVLDSTTGEVRALKYSDIAILTRSHGD----NLEIMQE 589

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 I +   D         +  +M   + I + + D+  V +L+SPLFNFSE D+ KI
Sbjct: 590  FAKRDIPLFITDAENYFQTFELTVIMNYLKIIDNPDQDIPLVTVLRSPLFNFSEKDLAKI 649

Query: 457  CTQRHETE--TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                  +   +         +    + ++ +  + EL   A      +    I       
Sbjct: 650  RINSKNSGFYSAVASYVGIGDELSDRCKNFLNKLDELRKFATTHRISELIWSIYAQTNLL 709

Query: 515  QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSAN 568
            +       G +    L+         E   +  L + I+ +      Q            
Sbjct: 710  EIMTGLPNGEQRRINLEALYERASSYESAGFKGLYQFINFINRMRRSQKDLAQPLLSKEA 769

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             N VR+MT+H +KGLE PVVF +    Q           I P      GI +     +  
Sbjct: 770  GNAVRLMTIHGSKGLEFPVVFYLGMQHQYQLRDLKGNYVINPDSL---GITLRQEHYRVD 826

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            + + +      K+   EE  R+LYV +TRA  +LI+       ++K  +     D     
Sbjct: 827  SLVKAIGNVTKKRQLLEEEARVLYVALTRAKQKLILVGDIANLDKKVQDWSIELDQSGQL 886

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI------------------ 730
               D+      L        +  +     +  +  L++ +++                  
Sbjct: 887  SLADKLSVTNPLGFMGPALAFDKHIVINMNDISNALDQSQSVLYVEYKDSDNFEFKKDED 946

Query: 731  -------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                          +L+   K   +   P K+          S I       +E+ L ++
Sbjct: 947  KVVGDSKNNNYTMDKLISTTKKLYQFDYPFKDASETTAYQAVSEIKKAFNDPIETELENS 1006

Query: 778  Q-------------------------TFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809
            +                             G   H +LQ         E +    I    
Sbjct: 1007 RLLSSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHLILQYYDYTGDGSEKQLDYEIEELI 1066

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857
             +  K        +L     +   +     +      +   EV  S            + 
Sbjct: 1067 KQ--KKLNPDIVPSLHKDQIQWFVHSSFAKSFWKNPENLQREVDFSSLISAKNLFKDFSD 1124

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKD 913
                I++ G ID   +S   I +F+YKT H     ++     I   +  QL +YE+ + +
Sbjct: 1125 ANAKILVHGTIDGYFVSNDGIILFDYKTDHVNKSYLDKSINLIKEKYTGQLRLYEQAINE 1184

Query: 914  SYPNKSLVCLLIYVSEPKVFII 935
                K +   LI +   +V  +
Sbjct: 1185 FGEEKVIGKYLILLDAKQVVEV 1206


>gi|307692433|ref|ZP_07634670.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ruminococcaceae
            bacterium D16]
          Length = 1206

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 152/1010 (15%), Positives = 331/1010 (32%), Gaps = 104/1010 (10%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             + + +    +        +   ++ + ++        L+ AQ   +A++    ++  + 
Sbjct: 218  EDAARQGREAEHRLERALSLCAQDELLQMNYAPSIQASLEAAQAFCEAAEGSHWDKTCAC 277

Query: 69   LSSFF------------LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
            L   F            L+     +   +TQ++       K+ L ++ + F     +   
Sbjct: 278  LPMPFPAVGRKRKRSEELSPLEESRAAALTQQVKNLRDTAKDLLARAAERFDGDSTQVLA 337

Query: 117  --YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-SAWIRYKI 173
               +   +    + L       Y+  K +  VLDF DL      LL   D     +    
Sbjct: 338  DLQEAAPAVRGLMDLVLRFQEAYQAEKARRGVLDFSDLEHFAVKLLVGPDGQPTALANMW 397

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
                  +++DE QDT+ +Q  +  +++             RTLF VGD KQSIY F  A+
Sbjct: 398  GARFEEVMVDEYQDTNQVQNAIFTAISR----------GGRTLFEVGDVKQSIYRFRLAD 447

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P   L + R           +     L  +FRS A +L   + +F    + Q    D T 
Sbjct: 448  PTIFLDKYRRFVPGDEAKEGEPRKRVLSRNFRSRAQVLEGCNDLFRNIMSTQLGELDYT- 506

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                          V   E   S   +      +          +E    + AR +A  I
Sbjct: 507  ---------DDQALVPGAEFPESGDYALELNALDLSYLGDQEGEKEDKNRLEARFVARRI 557

Query: 354  SNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
              ++    +   G   R ++  D+++L+R      ++    R L  +  I          
Sbjct: 558  RALLEEPLMVKEGDGVRPLRPSDVMILLRSP--GVVLHHYIRALGEE-GIPWNAEGGEDF 614

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                 +   +++ + + +   D+  +  L+SP+F F  D + ++  +       Y  + +
Sbjct: 615  FATTEVNVALSILQIVDNPRQDVPLIAALRSPVFGFDADHLAQL--RAGTKGDFYSALTE 672

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDE 531
             A  G +  Q  ++ + EL   A   +       I         F     G E  + L  
Sbjct: 673  AAQNGDTASQDFLRELEELRFGAGDRTCRQLIWHIYEKTNILGLFGAMPGGEERQNNLLT 732

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPT----IKRAHSANHNEVRIMTVHTAKGLESPV 587
                  + E     SL + +  LE+   T           + + V I+++H +KGLE PV
Sbjct: 733  LYALAGQMEDGGCRSLFQFLLRLERLRDTGAKLTAAGGGGDGDGVSILSIHKSKGLEKPV 792

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V +     ++     ++ +   P L   P         +        + + L++    E 
Sbjct: 793  VLVCGLSRRLNREDLMRPVLFHPVLGVGPKGLDRARMVEYPTLARRAVSRQLEREMMSEE 852

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNE------------------KKSNQRTWYDMVYDSF 689
             RLLYV MTRA ++LI+        +                  ++      + +++   
Sbjct: 853  MRLLYVAMTRAKEKLILTLALTEGAKALERLAEDAAAPVSPVALERQQSVGQWILLHALT 912

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE---------TIKQLMDEQKIP 740
              +  + +  +         +  +WS    E   LE            + ++  ++    
Sbjct: 913  RPEGEILRTLVGGGTECTATLGPKWSIRWIEGQGLEEARGRTGRFVPVSREEDGEDLTAA 972

Query: 741  KKLFSPIKNDINEPYILNPSTI---------------------DTKGKTNLESLLSDNQT 779
                 P    +  P  L  + +                     +   + +  +       
Sbjct: 973  LTWTYPFAAAVQAPSKLTATQLKGRVLDQEAAQEAQGAPQTAPEPIRRPDFIARRQGLTA 1032

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK-LWPAKEYKNLLLSIT-RLLENPMM 837
              +G  +H  +Q +    +H  +    +           + + + +   +      +P+ 
Sbjct: 1033 AQKGTALHLAMQYLPLEGDHSPEAIAEAVAGMVRDSFLTSLQGEAVKPEVLSAFFTSPLG 1092

Query: 838  TTAMSCD-SYSEVSVSGKINC-------PKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
                     + E   S              +++++ G +D   + ++ I + ++K+   +
Sbjct: 1093 RELAQAQEVHREFKFSLLTPAGDYLPGLEGEEVLLQGVVDCWFVDERGITVLDFKSDRIL 1152

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            P + E    ++  QLS Y + L+          +L + +      +P+ +
Sbjct: 1153 PGQEEKRAQSYAPQLSAYSRALERITGRSVCRKMLWFFATSTPVELPKTE 1202


>gi|255003370|ref|ZP_05278334.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Puerto Rico]
          Length = 867

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 182/641 (28%), Positives = 314/641 (48%), Gaps = 34/641 (5%)

Query: 38  SMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSSFFLTQKFTPQKNII---TQEINKKS 93
           +++ G+    K  + L    +  +   E  +   S F+  +   +K+I    T+ I ++ 
Sbjct: 217 ALKCGSTRDQKIGKRLSTWNTSARRSPEEVAEYLSIFINLQSLAKKSISSIVTKGILEQF 276

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
           PD+   ++  Q+  ++  ++F T ++ K T   + +A+   A YE+ KK +  LD+ D+I
Sbjct: 277 PDIVRVIECEQEALLEFAEKFYTERITKRTFHLVRIAQKCAALYEQDKKCSKYLDYNDVI 336

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             T DL+   D   W+ +++D EI+HIL+DE QD SL QW ++ +L  +FF G  ++++ 
Sbjct: 337 GLTLDLMLHPDYKDWVLFRLDSEIDHILVDESQDNSLEQWNIVAALCSEFFSGLGSNNNK 396

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           RTLF VGD KQSIY F  A P    R  +               I+L  SFRS   IL +
Sbjct: 397 RTLFVVGDVKQSIYGFQNARPDYFHRMHQYF----VAQSSDALTIQLQTSFRSAKPILHL 452

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
           VD+VF+     +      +  I+H + R    G V++W  + ++   +     E      
Sbjct: 453 VDRVFN---AFREQVSFQSQEIKHEAYRASDYGYVEVWPLINTEKRRKLYAWDELEVETG 509

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                +    +LA+ +A +I   I +  I    K R ++A DIL+LVR+R    ++    
Sbjct: 510 TPHATDH--LLLAQTMARSIGTWIQSGRIL-AAKNRPVRAGDILILVRRRT---ILVDYI 563

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   + V G DRF + D++AI+DL+ LG F+L  E+D++   +LKSP+F  ++ D+
Sbjct: 564 IAELRQAGVPVSGRDRFNMMDYVAIQDLVNLGEFLLLPENDMALAALLKSPIFELTDCDL 623

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             +   R +  +++  +Q FA      F  +  Y+  LI+ ++  +P D + LIL     
Sbjct: 624 LNLTHSRADAVSLWGKLQAFAQ-----FGKIADYLVSLINASKTRTPLDLYCLILSEH-- 676

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           R++ +   G    +++DEF+N   +   N+ ++L+  I  ++   P +K   + + +  R
Sbjct: 677 REKLLQHPGQASAEIVDEFMNSLTKFGLNNVNTLESFIHWIKSTNPEVKIDINTSEDVAR 736

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MTVH AKG++SP+VFL DT +             +  + D    PIW       N    
Sbjct: 737 VMTVHNAKGMQSPIVFLPDTTNVPR--------CELQLIFDAENTPIWCAG--DTNARCR 786

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           DL    ++    EY RLLYV MTRA D+L +        + 
Sbjct: 787 DLKTLKRQEEYNEYLRLLYVAMTRAEDELYVAGVGPPREQS 827


>gi|269958568|ref|YP_003328355.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel]
 gi|269848397|gb|ACZ49041.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel]
          Length = 867

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 183/643 (28%), Positives = 314/643 (48%), Gaps = 38/643 (5%)

Query: 38  SMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSSFFLTQKFTPQKNI---ITQEINKKS 93
           +++ G+    K  + L    + T+   E  +   S F+  +   +K+I    T+ I ++ 
Sbjct: 217 ALKCGSTRDQKIGKRLSTWNTSTRRSPEEVAEYLSIFINLQSLAKKSISSIATKGILEQF 276

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
           PD+   ++  Q+  ++  ++F T ++ K T   + +A+   A YE+ KK +  LD+ D+I
Sbjct: 277 PDIVRVIECEQEALLEFAEKFYTERITKRTFHLVRIAQKCAALYEQDKKCSKYLDYNDVI 336

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             T DL+   D   W+ +++D EI+HIL+DE QD SL QW ++ +L  +FF G  + ++ 
Sbjct: 337 GLTLDLMLHPDYKDWVLFRLDSEIDHILVDESQDNSLEQWNIVAALCSEFFSGLGSSNNK 396

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           RTLF VGD KQSIY F  A P    R  +               I+L  SFRS   IL +
Sbjct: 397 RTLFVVGDVKQSIYGFQNARPDYFHRMHQYF----VAQSSDALTIQLQTSFRSAKPILHL 452

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
           VD+VF+     +      +  I+H + R    G V++W  + ++       +  +W    
Sbjct: 453 VDRVFN---AFREQVSFQSQEIKHEAYRASDYGYVEVWPLINTEKRR----KLYAWDEPE 505

Query: 334 DSLPQESSASI--LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                  +     LA+ +A +I   I +  I    K R ++A DIL+LVR+R    ++  
Sbjct: 506 METGTPHATDHLLLAQTMARSIGTWIQSGRIL-AAKNRPVRAGDILILVRRRT---ILVD 561

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                     + V G DRF + D++AI+DL+ LG F+L  E+D++   +LKSP+F  ++ 
Sbjct: 562 YIIAELRQAGVPVSGRDRFNMMDYVAIQDLVNLGEFLLLPENDMALAALLKSPIFELTDC 621

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
           D+  +   R +  +++  +Q FA      F  +  Y+  LI+ ++  +P D + L+L   
Sbjct: 622 DLLNLTHSRADAVSLWGKLQAFAQ-----FGKIADYLVSLINASKTRTPLDLYCLVLSEH 676

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             R++ +   G    +++DEF+N   +   N+ ++L+  I  ++   P +K   + + + 
Sbjct: 677 --REKLLQHPGQASAEIVDEFMNSLTKFGLNNVNTLESFIHWIKSTNPEVKIDINTSEDV 734

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            R+MTVH AKG++SP+VFL DT S             +  + D    PIW       N  
Sbjct: 735 ARVMTVHNAKGMQSPIVFLPDTTSVPR--------CELQLIFDAENTPIWCAG--DTNAR 784

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             DL    ++    EY RLLYV MTRA D+L +        + 
Sbjct: 785 CRDLKTLKRQEEYNEYLRLLYVAMTRAEDELYVAGVGPPREQS 827


>gi|290889814|ref|ZP_06552901.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429]
 gi|290480424|gb|EFD89061.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429]
          Length = 1186

 Score =  351 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 154/924 (16%), Positives = 309/924 (33%), Gaps = 116/924 (12%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +   K++ D    ++       + +    + K        + L K     +   K++  +
Sbjct: 300  KPWIKEAKDSYRSIESDFLFLNESQWLDISEKSLGVVEELIRLTKVFRKKFALKKRELSL 359

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            LDF D       +L+       +R +I    + +L+DE QD + +Q  ++          
Sbjct: 360  LDFSDGEQFAYQILQN----QTVREEIQSLFDEVLVDEYQDINDLQENIL---------- 405

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                S+    F VGD KQSIY F  A+P     +    ++     G    +IEL  ++RS
Sbjct: 406  -TDVSNGSNFFMVGDLKQSIYGFRQADPVNFSNKYIQYKE-----GNGGELIELSENYRS 459

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              ++    + VF    + +    D    +  +++                   +  +   
Sbjct: 460  QHNVADFTNAVFRKLMDRKLGGIDYRGDVELKAANRDYP----------KNLKNVADISI 509

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRK 384
                   +     +S       IA  I  ++G   I+   +GK R +  +DI +L R   
Sbjct: 510  FDIDEESNEDEDFNSRQAQIEIIAAKIQALVGQSEIYDRQSGKMRPLVYRDITILERSHS 569

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                     + +   Y I +             +  +++  + I +   D+  V +L+SP
Sbjct: 570  ----WENDIQTIFKKYHIPINVAAG-NFLQEFEVSIVLSFLKIIDNPHQDIPLVAVLRSP 624

Query: 445  LFNFSEDDIFKICTQRHETETVYE----YIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            ++   E+ + +I T   + +                   K    +  +     IA     
Sbjct: 625  IYGLDENQLAEIRTADMKHDYFSALQAYAKTGQDLDLQKKMAAFLVQLENYREIAADNQI 684

Query: 501  HDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             D    I       +       G++    L     +  +   N +  L   I  +EQ   
Sbjct: 685  VDLIWQIYNDTNWPEYVAGMVGGSQRQANLHALYQYAQQLSDNHFVGLFSFIRYVEQLMD 744

Query: 560  TIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +++    A        V +MT+H AKGLE P+VFL++   Q+ +      M +       
Sbjct: 745  SVEDFAQAPVNMGQEAVSVMTIHAAKGLEFPIVFLLNLDKQIDNRDSNGAMVVDFDNGIG 804

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-- 673
                    Q K        + + +K+    E  RLLYV +TRA  +L +   S   ++  
Sbjct: 805  IDFVHPTSQVKIPTIQKIAVAEKIKEKNWAEEMRLLYVALTRAEQRLYLVGSSKRMSDLI 864

Query: 674  -----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE-------- 708
                              +   +++   +  S  N   +K  K+  + +K +        
Sbjct: 865  HNWGTPVSIGKKVIAFQDRMRAKSYQSWIGMSLANSGYIKLDKVEGNYSKKDLTFKIESY 924

Query: 709  --WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                  +   +  +    E+EET   L   +KI      P K +       N S +    
Sbjct: 925  NAQTIPKIVENKAKIKQNEQEETGIDLARSKKILD-YNYPYKIESELAAYHNVSELKRVF 983

Query: 767  KTNLESLLSDN-------------------------QTFNRGLIIHKLLQVIFTLPEHKR 801
            +     L+ +                           + ++G   H +L+ I    +   
Sbjct: 984  EDPDSLLMPEMNSDRQPQITELPEPKFIGGNDQEQVSSTDKGTATHLILEKI-DWKKEID 1042

Query: 802  KNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCP 858
            K+++     +N  +   K  +++ L  I     +   T      S    E + +  I   
Sbjct: 1043 KDYLQQLIKEN--IPDQKTRQSIELDRIIWFANSKFGTEIKKSASTLKREQTFAMLIPAK 1100

Query: 859  K--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
            +          +++ G ID   IS   I +F+YKT       +  +   +  QL++Y   
Sbjct: 1101 QIYQQVETSDPVLVHGIIDGYFISDGLITLFDYKTDRFGKDYVSKLKERYSGQLNLYAAA 1160

Query: 911  LKDSYPNKSL-VCLLIYVSEPKVF 933
            L   YPN  +   +++ +   ++ 
Sbjct: 1161 LSSIYPNLKVERKVVVGLQGKRLI 1184


>gi|222475386|ref|YP_002563803.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Florida]
 gi|255004493|ref|ZP_05279294.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Virginia]
 gi|222419524|gb|ACM49547.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale
           str. Florida]
          Length = 867

 Score =  351 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 183/641 (28%), Positives = 314/641 (48%), Gaps = 34/641 (5%)

Query: 38  SMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSSFFLTQKFTPQKNII---TQEINKKS 93
           +++ G+    K  + L    + T+   E  +   S F+  +   +K+I    T+ I ++ 
Sbjct: 217 ALKCGSTRDQKIGKRLSTWNTSTRRSPEEVAEYLSIFINLQSLAKKSISSIVTKGILEQF 276

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
           PD+   ++  Q+  ++  ++F T ++ K T   + +A+   A YE+ KK +  LD+ D+I
Sbjct: 277 PDIVRVIECEQEALLEFAEKFYTERITKRTFHLVRIAQKCAALYEQDKKCSKYLDYNDVI 336

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             T DL+   D   W+ +++D EI+HIL+DE QD SL QW ++ +L  +FF G  + ++ 
Sbjct: 337 GLTLDLMLHPDCKDWVLFRLDSEIDHILVDESQDNSLEQWNIVAALCSEFFSGLGSSNNK 396

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           RTLF VGD KQSIY F  A P    R  +               I+L  SFRS   IL +
Sbjct: 397 RTLFVVGDVKQSIYGFQNARPDYFHRMHQYF----VAQSSDALTIQLQTSFRSAKPILHL 452

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
           VD+VF+     +      +  I+H + R    G V++W  + ++   +     E      
Sbjct: 453 VDRVFN---AFREQVSFQSQEIKHEAYRASDYGYVEVWPLINTEKRRKLYAWDELEVETG 509

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                +    +LA+ +A +I   I +  I    K R ++A DIL+LVR+R    ++    
Sbjct: 510 TPHATDH--LLLAQTMARSIGTWIQSGRIL-AAKNRPVRAGDILILVRRRT---ILVDYI 563

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   + V G DRF + D++AI+DL+ LG F+L  E+D++   +LKSP+F  ++ D+
Sbjct: 564 IAELRQAGVPVSGRDRFNMMDYVAIQDLVNLGEFLLLPENDMALAALLKSPIFELTDCDL 623

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             +   R +  +++  +Q FA      F  +  Y+  LI+ ++  +P D + LIL     
Sbjct: 624 LNLTHSRADAVSLWGKLQAFAQ-----FGKIADYLVSLINASKTRTPLDLYCLILSEH-- 676

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           R++ +   G    +++DEF+N   +   N+ ++L+  I  ++   P +K   + + +  R
Sbjct: 677 REKLLQHPGQASAEIVDEFMNSLTKFGLNNVNTLESFIHWIKSTNPEVKIDINTSEDVAR 736

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MTVH AKG++SP+VFL DT +             +  + D    PIW       N    
Sbjct: 737 VMTVHNAKGMQSPIVFLPDTTNVPR--------CELQLIFDAENTPIWCAG--DTNARCR 786

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           DL    ++    EY RLLYV MTRA D+L +        + 
Sbjct: 787 DLKTLKRQEEYNEYLRLLYVAMTRAEDELYVAGVGPPREQS 827


>gi|306831079|ref|ZP_07464240.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
 gi|304426645|gb|EFM29756.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
          Length = 1210

 Score =  351 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 152/1001 (15%), Positives = 327/1001 (32%), Gaps = 138/1001 (13%)

Query: 26   FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
              V+D+  Y   +   G PT     + L    Q +   + F  L      +    +    
Sbjct: 255  QDVTDLEDYKQKT-AKGTPTA-NYKKHLNIIEQLREWAQHFETLYG----RDGLGRLATD 308

Query: 86   TQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTYKMFKSTLASL----TLAKYLNA 135
              ++    P +          K  Q     ++     +K    +L  L       +  + 
Sbjct: 309  VAKLLPAGPAVTVAGTKYPVFKPLQGRLTGLKHLETIFKYQPESLPLLELLQAFMQDFSE 368

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y +AK +    +F D+      +L++    A IR     + + +++DE QD +  Q  +
Sbjct: 369  QYLQAKIQENAFEFSDIAHFAIQILEEN---ADIRELYQNKYHEVMVDEYQDNNHTQERM 425

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +  L           S+    F VGD KQSIY F  A+P+   ++ +  Q+       + 
Sbjct: 426  LELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQE----HPDRG 470

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             +I L  +FRS +++L   + +F+   +          T +  +    Q       E   
Sbjct: 471  KLILLKENFRSQSEVLDATNSIFTHLMDEAVGEILYDDTHQLVAGSPAQK------ESHP 524

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                       ++ +       +        + +A  I  +   +          +  +D
Sbjct: 525  ENKTQVLIYDIDNNSDLPSDAEEGQINPNEVKLVAKEIIRLHNEEH---------VAFED 575

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            I +LV  R                Y I  V           + +  ++   R + +  +D
Sbjct: 576  ITLLVSSRTR----NDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLND 631

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--------------ISK 480
             + V +++SP+F+F+ED++ ++  Q  E +      QK  +                  K
Sbjct: 632  YALVALMRSPMFSFNEDELARLALQTTEDDHRANLYQKLEHALAGKGSHNELMTITLHDK 691

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539
                +         A++ + +D    I   +       +     +    L          
Sbjct: 692  LADFMACFAAWREFAKWHALYDLIWKIYNDRFYYDYVGNLPRAEQRQANLYALALRANNF 751

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGS 595
            E+  +  L   I  +++   +             N V +MT+H +KGLE   VF+++   
Sbjct: 752  ERTGFKGLSRFIRMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLEFKYVFILNIDK 811

Query: 596  QVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            +      +  + +                          +            + L+ +T 
Sbjct: 812  KFSIQDLMSPLILSRQNGAGIKYLADMKEELETDVFPTVKVSMDTLPYQLNKRELRLATL 871

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDS 688
             E  RL YV MTRA  +L +   +++                   ++ N  T+ D V   
Sbjct: 872  SEQMRLFYVAMTRAEKKLYLVGKASSEKLVDKYSGKSENNHLPVAERENFMTFQDWVLAI 931

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWS-------THHPENTPLEREETIKQLMDEQKIPK 741
            +    +       + +  ++    +             + T   + E I + +D  +  +
Sbjct: 932  YEAYSKENLPFAVDFVTDEDLTDDKIGKIEATSVITPDDLTDNRQSENITEALDRLEAVE 991

Query: 742  KLFSPIKNDINEPYILNPSTI----------------------DTKGKTNLESLLSDNQT 779
            KL +     IN P +  PS +                          +    S  +  + 
Sbjct: 992  KLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVDVMTKAYQAQPTFELPDFSKKAKIEA 1051

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
               G  +H+L+Q I    +    +   +    +A+     + +  L ++    EN  +  
Sbjct: 1052 TAIGSAMHELMQRIPLSKQVTIADITAALAQVSAE--DEVKARIRLENVLAFFENSELGQ 1109

Query: 840  AMSCD---SYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
             +       Y E   +   +    K+  ++ G +D   +    I +F+YKT  +  +   
Sbjct: 1110 LIQQHTDKVYREAPFAMLKEDPDSKEKFVVRGIVDGYLVLDDRIVLFDYKTDKY--KNSV 1167

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I   +  Q+++Y + L  SY  K++   L+ +   ++ ++
Sbjct: 1168 EIKERYQGQMALYAEALSKSYDRKNVDKYLVLLGGEQLEVV 1208


>gi|295095005|emb|CBK84096.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Coprococcus sp.
            ART55/1]
          Length = 1280

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 152/1013 (15%), Positives = 325/1013 (32%), Gaps = 110/1013 (10%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
             +GL +++  ELI   L         D++  +    +    ++  +   +++ +Q + I 
Sbjct: 278  AYGLRVDKDVELITHMLRSCGGED--DLHVDLFELRDIYRSSLRPEGLKMEKDAQGRSIC 335

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              F    +        P+K    +        + + +     +   I             
Sbjct: 336  YAFDRFVN--PGGGADPEKKEFVKSRRDVYKSIIDDIVSVVLDVDDIL--RQAAMTEPVI 391

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEIN 178
             + L L +       + K    + +F D+      +L       R V + I  ++ +   
Sbjct: 392  SSLLKLTELYMDELMKVKMDKNMFEFHDIEEFAFRILCDGIEDDRAVPSEIGKEVSRRYR 451

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             ILIDE QD++ +Q  ++                    F VGD KQSIY F  A P   +
Sbjct: 452  EILIDEYQDSNFLQEYIL-------ASVSGHGEDIHNTFMVGDVKQSIYRFRMARPDLFI 504

Query: 239  REKRINQK----RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +    ++       +     + I L  +FRS  ++L  V+ +F+     +    +    
Sbjct: 505  EKYDSYRRLGDADIADPDIDGNSILLTRNFRSEINVLKTVNSIFAQLMRREIGDIEYDEG 564

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
             +  S      G        V           ++     D   +  +  + A  IA  I 
Sbjct: 565  AKLNSRFAISDGEGMAEPDDVDHGPVSEFILIDNNMREADVSEEYGNPEVEANYIAGKIR 624

Query: 355  NMIGTDTIFSNG---KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +++        G    +R ++ KDI++L+R       I      +  +  I +       
Sbjct: 625  DIVDGSEPLYVGSGADRRPVRYKDIVILLRSVSTASTI---FDRVFQEKGIPLYIESESG 681

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--------------C 457
              D   I+ L+++   + +   D     +L+SPL    E+++  I               
Sbjct: 682  YFDAAEIRTLVSMLSIVDNSYVDYDLAAVLRSPLVGLDEEELAVIVGEYRSRYEKNGTDW 741

Query: 458  TQR--HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
              R   +     +         + +    ++ +  L     + S  D    +L       
Sbjct: 742  NARLYDKVIDYMDTHVGEKKHAVDRLWEFLRMLDYLKKNKNYMSISDIIRYVLDTTGFYW 801

Query: 516  QFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANH 569
               +R  G      +D  +      E+NS   +   I  +++                N 
Sbjct: 802  FVGARPMGRRRQANIDMLIKKADDFEENS-KGVFNFIRYVDELKTNDLDFAEADVVSENE 860

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            + VR+MT+H +KGLE PVVF+   G +         + +               +++   
Sbjct: 861  DVVRVMTMHKSKGLEFPVVFVSGLGKEFNLMDTRSNVLVHQDHYLACDQVDLRTRARRMT 920

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                 + K++   T  E  R+LYV +TRA ++L +      +++ K+    +      ++
Sbjct: 921  FFKRIMSKNIVAETYAEEMRVLYVALTRAKEKLYMTGCVKDADKFKAACDMYIIGDRMNY 980

Query: 690  H--------NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
                            ++     +  + I  E  +     T  +  E +     E K+ K
Sbjct: 981  ASIMKANGYAAWIYTALRYVGECDHVKSIEVEADSFMSPETDQDEAENMTVEASEAKLDK 1040

Query: 742  KLFSPIKNDINEPYILNPSTI------------------------------DTKGKTNLE 771
            +L+  +KN +   Y    S +                                + +  + 
Sbjct: 1041 ELYDHVKNGLEFRYGYRHSGLKSKMSITEIKRLQAHGEDAITPDILTSREYSARSEVPIP 1100

Query: 772  SLLSDNQ---TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL-LS 827
            + +S+ +       G I HK++++     +                L+     + +    
Sbjct: 1101 AFMSEERIVHGNEIGNIYHKIMELADFSGKTVADAEKDVDRVFELGLFDELYRERIRPKK 1160

Query: 828  ITRLLENPMMTTAMSCD----SYSEVSVSGKINC----------PKKDIIISGRIDQISI 873
            I +++ + +     +       Y E      +              + I++ G ID    
Sbjct: 1161 IYKMIHSEIGQRMAAAGKSDRLYRERQFYMMMEPGEIMSSLKDCGDETIVVQGIIDAYFE 1220

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                I + +YKT     ++   +   +  QL  Y  +L+     K +   +IY
Sbjct: 1221 EDGGIVLLDYKTDSV--KDASELVKRYHVQLDKYADVLEQLTGMK-VKEKVIY 1270


>gi|254995195|ref|ZP_05277385.1| hypothetical protein AmarM_04376 [Anaplasma marginale str.
           Mississippi]
          Length = 866

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 184/641 (28%), Positives = 315/641 (49%), Gaps = 34/641 (5%)

Query: 38  SMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSSFFLTQKFTPQKNII---TQEINKKS 93
           +++ G+    K  + L    + T+   E  +   S F+  +   +K+I    T+ I ++ 
Sbjct: 216 ALKCGSTRDQKIGKRLSTWNTSTRRSPEEVAEYLSIFINLQSLAKKSISSIVTKGILEQF 275

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
           PD+   ++  Q+  ++  ++F T ++ K T   + +A+   A YE+ KK +  LD+ D+I
Sbjct: 276 PDIVRVIECEQEALLEFAEKFYTERITKRTFHLVRIAQKCAALYEQDKKCSKYLDYNDVI 335

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             T DL+   D   W+ +++D EI+HIL+DE QD SL QW ++ +L  +FF G  + ++ 
Sbjct: 336 GLTLDLMLHPDCKDWVLFRLDSEIDHILVDESQDNSLEQWNIVAALCSEFFSGLGSSNNK 395

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           RTLF VGD KQSIY F  A P    R  +               I+L  SFRS   IL +
Sbjct: 396 RTLFVVGDVKQSIYGFQNARPDYFHRMHQYF----VAQSSDALTIQLQTSFRSAKPILHL 451

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
           VD+VF+     +      +  I+H + R    G V++W  + ++   +     E      
Sbjct: 452 VDRVFN---AFREQVSFQSQEIKHEAYRASDYGYVEVWPLINTEKRRKLYAWDELEVETG 508

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                +    +LA+ +A +I   I +  I    K R ++A DIL+LVR+R    ++    
Sbjct: 509 TPHATDH--LLLAQTMARSIGTWIQSGRIL-AAKNRPVRAGDILILVRRRT---ILVDYI 562

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   + V G DRF + D++AI+DL+ LG F+L  E+D++   +LKSP+F  ++ D+
Sbjct: 563 IAELRQAGVPVSGRDRFNMMDYVAIQDLVNLGEFLLLPENDMALAALLKSPIFELTDHDL 622

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             +   R +  +++  +Q FA      F  +  Y+  LI+ ++  +P D + L+L     
Sbjct: 623 LNLTHSRADAVSLWGKLQAFAQ-----FGKIADYLASLINASKTRTPLDLYCLVLSEH-- 675

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           R++ +   G    +++DEFLN   +   N+ ++L+  I  ++   P +K   +A+ +  R
Sbjct: 676 REKLLQHPGQASAEIVDEFLNSLTKFGLNNVNTLESFIHWIKSTNPEVKIDINASEDVAR 735

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MTVH AKG++SP+VFL DT +             +  + D    PIW       N    
Sbjct: 736 VMTVHNAKGMQSPIVFLPDTTNVPR--------CELQLIFDAENTPIWCAG--DTNARCR 785

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           DL    ++    EY RLLYV MTRA D+L +        + 
Sbjct: 786 DLKTLKRQEEYNEYLRLLYVAMTRAEDELYVAGVGPPREQS 826


>gi|25010945|ref|NP_735340.1| exonuclease RexA [Streptococcus agalactiae NEM316]
 gi|77413173|ref|ZP_00789372.1| reticulocyte binding protein [Streptococcus agalactiae 515]
 gi|81588835|sp|Q8E5T9|ADDA_STRA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|23095324|emb|CAD46535.1| unknown [Streptococcus agalactiae NEM316]
 gi|77160791|gb|EAO71903.1| reticulocyte binding protein [Streptococcus agalactiae 515]
          Length = 1207

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 153/917 (16%), Positives = 312/917 (34%), Gaps = 122/917 (13%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIIN 155
             K+  +  + ++     +K    +L  L L +      +  Y + K +    +F D+   
Sbjct: 329  FKQLHNRIVGLKHLEVIFKYQGESLFLLELLQSFVLDFSEQYLQEKIQENAFEFSDIAHF 388

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               +L++      IR     + + +++DE QD +  Q  ++  L           S+   
Sbjct: 389  AIQILEENHD---IRQLYQDKYHEVMVDEYQDNNHTQERMLELL-----------SNGHN 434

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             F VGD KQSIY F  A+P+    + +  Q    +   +  +I L  +FRS +++L   +
Sbjct: 435  RFMVGDIKQSIYRFRQADPQIFNDKYKAYQ----DNPSQGKLIILKENFRSQSEVLDSTN 490

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             VF+   + +        + + ++    Q       +  V   D+  +   +S +  +D 
Sbjct: 491  SVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDINDSDSQQYDI 550

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             P E      A+ +A  I  +   +          +  +DI +LV  R            
Sbjct: 551  SPAE------AKLVAKEIIRLHKEE---------NVPFQDITLLVSSRTR----NDGILQ 591

Query: 396  LKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
              + Y I  V           + +  ++   R I +  +D + V +L+SP+F F+EDD+ 
Sbjct: 592  TFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLT 651

Query: 455  KICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            +I  Q  +    +           +         SK  H +K        A++ S +D  
Sbjct: 652  RIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKTFQTWRDFAKWHSLYDLI 711

Query: 505  TLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I   +       +     +    L        + E+  +  L   I  +++       
Sbjct: 712  WKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEND 771

Query: 564  AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---- 615
                      N V +MT+H +KGLE   VF+++   +         + +  +        
Sbjct: 772  LADVEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYV 831

Query: 616  -------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                       +   +            + L+ +T  E  RLLYV MTRA  +L +   +
Sbjct: 832  ADMRHELEEELLPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKA 891

Query: 669  NT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            +                    S E     + W   V++++   E    I   +     + 
Sbjct: 892  SQTKWADHYDLVSENNHLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDH 951

Query: 710  IAYEWSTHHPENTPLERE----ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--- 762
                 +   P N   + E    E I + +   +  +++    K  I  P +  PS +   
Sbjct: 952  HIGMVNPSLPFNPDNKAENRQSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKF 1011

Query: 763  -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                                   K    S          G  +H+L+Q I      K ++
Sbjct: 1012 YEPILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMED 1071

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSVSG--KINCP 858
               +    NA+   + +    +  I    +   +   +       + E   +   +    
Sbjct: 1072 IQKALTEVNAE--TSVKAAIQIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPES 1129

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             +  ++ G ID   + +  I +F+YKT   V      +   +  Q+++Y + LK SY  +
Sbjct: 1130 GEKFVVRGIIDGYLLLENRIILFDYKTDKFV--NPLELKERYQGQMALYAEALKKSYEIE 1187

Query: 919  SLVCLLIYVSEPKVFII 935
             +   LI +   ++ ++
Sbjct: 1188 KIDKYLILLGGKQLEVV 1204


>gi|257869454|ref|ZP_05649107.1| UvrD/REP helicase [Enterococcus gallinarum EG2]
 gi|257803618|gb|EEV32440.1| UvrD/REP helicase [Enterococcus gallinarum EG2]
          Length = 1226

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 158/1031 (15%), Positives = 319/1031 (30%), Gaps = 137/1031 (13%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            + +  + E +          Q   + K  +L         + + Q +Q+   T  +   +
Sbjct: 229  VEIAATAEHLLAAAKQFA-DQSPLMEKAAALVQA-----EISQVQEIQRVLATDDLSVLY 282

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD------RFNTYKMF 120
              L+     +  + +K    +E++++   L++  KK  ++                    
Sbjct: 283  DRLTHLTFDRYPSYRKEEQ-KELSQEIKPLRDDAKKLLEQLKGYFPYPPADMLQMLQLSE 341

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                    + K     ++  K    +LDF DL   T  +L      +        +   +
Sbjct: 342  PIVATMAEMTKEFLTAFQARKLAKGLLDFNDLEHFTLKILLGDGTGSDASVYYRDKFEEV 401

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QD + +Q  ++  + +              +F VGD KQSIYSF  A+P   + +
Sbjct: 402  LVDEYQDINRLQEAILYWVRQ-------VSGDHGNMFMVGDVKQSIYSFRLADPTLFIEK 454

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                +            I L  +FRS  ++L   + VF        L ++    I +  +
Sbjct: 455  YLAFE-----HQNGGRRIVLAENFRSRREVLDFTNLVFQQ------LMDEQVGQIPYDDA 503

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                 G     E      +     ++   T+       E    + A      I  +I + 
Sbjct: 504  AALVPGFPSFHESDAFIPELLIYEKEAESTTNLIEDKTEGELHVTA----IKIQELIQSQ 559

Query: 361  TIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
             +  + K+   R +  +DI++L   RK+  +I  + +     + I +  ND         
Sbjct: 560  FMIYDKKRREERPVTYQDIVLLTPTRKNNLVILDVFK----KFGIPLEVNDAQNYFQATE 615

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            I+ ++AL + I +   D+  V +L+SP+   +ED++ +I      +E     +    N  
Sbjct: 616  IQTMIALLQIIDNPYQDIPLVAVLRSPMVGLTEDELAEIRLADRTSEFYKAVLTYQDNQK 675

Query: 478  ------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530
                    +    +  ++     A+     +    I          +    G +    L 
Sbjct: 676  GTVSALSKRVDDFLSELNRWREAARRLPIPNLLWDIYDTTAYLDYVVGLPAGQQRYANLI 735

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESP 586
              ++   + E++S+  L + I  +E+     K           N VR+MTVH +KGLE P
Sbjct: 736  ALIHRAEKYEKSSFRGLYQFIRFIEKMQEKDKDLAEPLATPAENAVRVMTVHASKGLEFP 795

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VVFL+DT          K+      L             K        + +   K    E
Sbjct: 796  VVFLLDTTKFFNYQDFQKRYIFEEQLGAGIQYIDASENIKYETIPFQAIKQVRLKKALSE 855

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNE--------------------KKSNQRTWYDMVY 686
              R LYV +TRA  +L +                             +   + +  D V 
Sbjct: 856  EMRKLYVALTRAEQKLYLVGSYKDRQAAFKAWQAGLTQSQTVLDPALRLVARGSLMDWVG 915

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHH--------------PENTPLEREETIKQ 732
             +      ++++    S  K           H              P    +        
Sbjct: 916  LTLIRHPEMEQVFTDASERKMTIHHPARFQIHWWNQDQIDQQLQVQPPTEAVVAPTPSTT 975

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTI------------------------------ 762
              +          P           + S +                              
Sbjct: 976  APERLLNRLDYQYPYSKATQTTSYQSVSELKRLYNDPDDQDITLLEWHSADQKLAPQRFR 1035

Query: 763  --DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
              +T+            Q  + G   H ++Q++         +          +    K+
Sbjct: 1036 YVETELAKPRFLQEQKPQASSIGSATHLVMQMLPLTEVPTEASLAAFIDELVERQLFTKD 1095

Query: 821  YKNLLLS--ITRLLENPMMTTA--MSCDSYSEVSVSG---------KINCPKKDIIISGR 867
              + +    I    +  +  T    +     E   S            + P  +++I G 
Sbjct: 1096 VADKIDQASIVWFYQTAVGQTLIKYATQVKREQPFSMLKEAATIFEGFDEPDAELLIHGI 1155

Query: 868  IDQISISQQNIFIFEYKTHHHVPQEIE---HIPYTHIAQLSIYEKILKDSYPNKSL-VCL 923
            ID        I ++++KT      E +    +   +  QL +Y + L+ +   K +    
Sbjct: 1156 IDGYVELPDRIILYDFKTDAVFGSEAQIEKRMRDRYYGQLKLYCQALEQAL-QKPVTETY 1214

Query: 924  LIYVSEPKVFI 934
            L+ ++  K+  
Sbjct: 1215 LVLLAAKKIIE 1225


>gi|310826445|ref|YP_003958802.1| recombination helicase AddA [Eubacterium limosum KIST612]
 gi|308738179|gb|ADO35839.1| recombination helicase AddA [Eubacterium limosum KIST612]
          Length = 1190

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 154/976 (15%), Positives = 319/976 (32%), Gaps = 118/976 (12%)

Query: 36   SLSMETGNPTILKKAQTLQQ-ASQTQCIEERFSLLSSFF---LTQKFTPQKNIITQEINK 91
            + ++        K A  LQ+         +        F   L+     + +   +   +
Sbjct: 234  AYALCRDTEGFEKTAAQLQEDFFAVGLAMDALEEGYDDFRNALSGIRFARYSGNKKADAE 293

Query: 92   KSPDLKEKLKKSQDEFIKIRDRF---------NTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             S  +K+   +++     ++ R             +M +     + L +     Y+  K 
Sbjct: 294  TSDHIKDLRNEAKGIVQGLQKRLNLDLTEALAQLAEMKRPMEDLVGLTRDFQKKYQLKKA 353

Query: 143  KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +  +LDF DL  +T  +L+   ++A +R    ++  ++ +DE QDT+ +Q  +I+ +  D
Sbjct: 354  EKNLLDFNDLEQSTLRILENPAIAAEVR----EQYAYVFLDEYQDTNDMQEAIIKRIVRD 409

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                          F VGD KQSIY F  A+P   + + R   +          +I L  
Sbjct: 410  D-----------NYFMVGDVKQSIYRFRLADPTIFIGKYRAFSQETDALND---LITLSQ 455

Query: 263  SFRSTADILTVVDKVFSIPEN-AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            +FRS   ++  V+ VF    + A G          ++               + ++ D  
Sbjct: 456  NFRSCQGVVDGVNTVFEAIMSPALGEIAYDERARLYKGLDSEGPYVKTQVHVIENKTDED 515

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLV 380
             +P           + +  +  + AR IA  I + +G        G++R++Q +DI VL+
Sbjct: 516  TDPI----------VGEMPAVEMEARFIAREIQSRVGKPFYDTKTGEERLLQYRDIGVLM 565

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R       +        ++  I    +      + + I  +M L   I +   DL  + +
Sbjct: 566  RSVAGRGDVYAKI---FSELGIPAYFDGGEQYYESMEIGVIMNLLDLIDNHHQDLPLLSV 622

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQ---KFANCGISKFQHVIKYIHELIHIAQF 497
            + SP+ +F  ++  +I   + E        +   +  +   +K +   + +      ++ 
Sbjct: 623  MTSPIGDFDTEECTEIRLFQKEGSYYAAAEKYKDEREDALAAKLKAFYQRLDAWQWDSRV 682

Query: 498  CSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                DF   +           +   G +  + L   L      ++++   L   I  +E+
Sbjct: 683  MDIEDFLWKLYLDTGYYHFVGALPGGEQRQNNLRVLLKRAGDYKRSTLRGLFYFIRFIER 742

Query: 557  Y-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                    +     S + N VRIMT+H +KGLE PVVFL  TG         + +     
Sbjct: 743  MKKHKYDLSPPGVLSESENVVRIMTIHKSKGLEFPVVFLSGTGKLFNKRTRNRDILFHKD 802

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            L   P       ++K      +  ++  +  T  E  RLLYV MTRA + L++       
Sbjct: 803  LGICPDYINLELRAKMPTLAKNICLEKNEMETLSEEMRLLYVAMTRARESLVVVGMVKNL 862

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-------------- 717
              + +      D+ +           ++     +  E    E   H              
Sbjct: 863  ESRLTAWSGPGDLYHLKKAGGLLDWIMQALLRNSAPEIAGEEKRRHLSLPSYDVYFYTAE 922

Query: 718  --------HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP------------YIL 757
                          L  E         Q++ ++L      +  +               +
Sbjct: 923  QSLKHHVSEDTVEELMEEAQAPSEAMWQEVCRRLSYRYPFEGQQELPGKMTVTEVKRLRI 982

Query: 758  NPSTIDTKGKTNLESLLS-------DNQTFNRGLIIHKLLQVIF----------TLPEHK 800
                +         +L S       +     +G  +H ++Q +           T     
Sbjct: 983  QAEALGVPEIPERVALPSFMVADAREITGAEKGTALHFMMQSLPLDKLRAVAADTGALDG 1042

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCP- 858
                          L P       L  I R  ++ +    ++      EV  + + +   
Sbjct: 1043 LLTEERQRLVTEELLLPELAETIDLEVIRRFFQSELGRRMLAAERVRREVPFNYQYDPRK 1102

Query: 859  --------KKDIIISGRIDQISISQQNIFIFEYKTHHH-VPQEIEHIPYTHIAQLSIYEK 909
                       +++ G ID          + +YKT  +      + +   +  Q++ Y +
Sbjct: 1103 VLPDWQHADTPLVVQGMIDCCFEENGKWILLDYKTDRYFGEASRKQLIDQYRLQINFYAE 1162

Query: 910  ILKDSYPNKSLVCLLI 925
             L +      +   ++
Sbjct: 1163 ALANL-TGMPVAERIL 1177


>gi|227904086|ref|ZP_04021891.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC
            4796]
 gi|227868105|gb|EEJ75526.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC
            4796]
          Length = 1207

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 161/982 (16%), Positives = 306/982 (31%), Gaps = 129/982 (13%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
                 A +     ++   L      +    +     ++I +   + ++   +++ +   I
Sbjct: 257  DKFIDAIKNDEDYDQQRNLLRLCKFEVKYRKSAKWDEDIQEFYAETQKLKSEAKSQIFDI 316

Query: 111  RDRFNTYKMFKSTL----------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
               F      + T           A       L   + E K+    LD+ D+      +L
Sbjct: 317  FTAFYATDEKEQTRIMQESQKIVSAISKAELALIDRFNELKRNENFLDYSDMEQLAYQIL 376

Query: 161  K-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
                  S   R     +   ILIDE QD + +Q  +I+ +          ++   TLF V
Sbjct: 377  SADTSNSQMAREFYQNKFKEILIDEYQDINALQERIIQQV---------KNTDKNTLFMV 427

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD  QSIY F  AEP   L++       A+   ++   I L  +FRST  +   V+++F 
Sbjct: 428  GDVNQSIYGFRQAEPSLFLKKYHGF---ASEENKREKRILLSDNFRSTEPVTKTVNQLFK 484

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
               ++     D +   +           +    +++     +      +   + +     
Sbjct: 485  SILSSDFGGIDYSKEGQLIFGAKYYPDALPKASEIIVHKKQKDIDNDNNGIDFSEV---- 540

Query: 340  SSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                     +   I  +        +   G+ R ++  DI +L R   D           
Sbjct: 541  -------EMVLARIKQLKKEHFQVLDSTTGEVRALKYSDIAILTRSHGD----NLEIMQE 589

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 I +   D         +  +M   + I + + D+  V +L+SPLFNFSE D+ KI
Sbjct: 590  FAKRDIPLFITDAENYFQTFELTVIMNYLKIIDNPDQDIPLVTVLRSPLFNFSEKDLAKI 649

Query: 457  CTQRHETE--TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                  +   +         +    + ++ +  + EL   A      +    I       
Sbjct: 650  RINSKNSGFYSAVASYVGIGDELSDRCKNFLNKLDELRKFATTHRISELIWSIYAQTNLL 709

Query: 515  QQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSAN 568
            +       G +    L+         E   +  L + I+ +      Q            
Sbjct: 710  EIMTGLPNGEQRRINLEALYERASSYESAGFKGLYQFINFINRMRRSQKDLAQPLLSKEA 769

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             N VR+MT+H +KGLE PVVF +    Q           I P      GI +     +  
Sbjct: 770  GNAVRLMTIHGSKGLEFPVVFYLGMQHQYQLRDLKGNYVINPDSL---GITLRQEHYRVD 826

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            + + +      K+   EE  R+LYV +TRA  +LI+       ++K  +     D     
Sbjct: 827  SLVKAIGNVTKKRQLLEEEARVLYVALTRAKQKLILVGDIANLDKKVQDWSIELDQSGQL 886

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI------------------ 730
               D+      L        +  +     +  +  L++ +++                  
Sbjct: 887  SLADKLSVTNPLGFMGPALAFDKHIVINMNDISNALDQSQSVLYVEYKDSDNFEFKKDED 946

Query: 731  -------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                          +L+   K   +   P K+          S I       +E+ L ++
Sbjct: 947  KVVGDSKNNNYTMDKLISTTKKLYQFDYPFKDASETTAYQAVSEIKKAFNDPIETELENS 1006

Query: 778  Q-------------------------TFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809
            +                             G   H +LQ         E +    I    
Sbjct: 1007 RLLSSTNRYLQPIDTKPNFLYQTKFTGAEIGTATHLILQYYDYTGDGSEKQLDYEIEELI 1066

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857
             +  K        +L     +   +     +      +   EV  S            + 
Sbjct: 1067 KQ--KKLNPDIVPSLHKDQIQWFVHSSFAKSFWKNPENLQREVDFSSLISAKNLFKDFSD 1124

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKD 913
                I++ G ID   +S   I +F+YKT H     ++     I   +  QL +YE+ + +
Sbjct: 1125 ANAKILVHGTIDGYFVSNDGIILFDYKTDHVNKSYLDKSINLIKEKYTGQLRLYEQAINE 1184

Query: 914  SYPNKSLVCLLIYVSEPKVFII 935
                K +   LI +   +V  +
Sbjct: 1185 FGEEKVIGKYLILLDAKQVVEV 1206


>gi|76787847|ref|YP_329619.1| exonuclease RexA [Streptococcus agalactiae A909]
 gi|77406401|ref|ZP_00783461.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|77410683|ref|ZP_00787042.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|123601917|sp|Q3K1I4|ADDA_STRA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|76562904|gb|ABA45488.1| exonuclease RexA [Streptococcus agalactiae A909]
 gi|77163219|gb|EAO74171.1| reticulocyte binding protein [Streptococcus agalactiae CJB111]
 gi|77174992|gb|EAO77801.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1207

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 152/917 (16%), Positives = 311/917 (33%), Gaps = 122/917 (13%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIIN 155
             K+  +  + ++     +K    +L  L L +      +  Y + K +    +F D+   
Sbjct: 329  FKQLHNRIVGLKHLEVIFKYQGESLFLLELLQSFVLDFSEQYLQEKIQENAFEFSDIAHF 388

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               +L++      IR     + + +++DE QD +  Q  ++  L           S+   
Sbjct: 389  AIQILEENHD---IRQLYQDKYHEVMVDEYQDNNHTQERMLELL-----------SNGHN 434

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             F VGD KQSIY F  A+P+    + +  Q    +   +  +I L  +FRS +++L   +
Sbjct: 435  RFMVGDIKQSIYRFRQADPQIFNDKYKAYQ----DNPSQGKLIILKENFRSQSEVLDSTN 490

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             VF+   + +        + + ++    Q       +  V   D+  +   +S +  +D 
Sbjct: 491  SVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDIDDSDSQQYDI 550

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             P E      A+ +A  I  +   +          +  +DI +LV  R            
Sbjct: 551  SPAE------AKLVAKEIIRLHKEE---------NVPFQDITLLVSSRT----RNDGILQ 591

Query: 396  LKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
              + Y I  V           + +  ++   R I +  +D + V +L+SP+F F+EDD+ 
Sbjct: 592  TFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLT 651

Query: 455  KICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            +I  Q  +    +           +         SK  H +K        A++ S +D  
Sbjct: 652  RIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKTFQTWRDFAKWHSLYDLI 711

Query: 505  TLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I   +       +     +    L        + E+  +  L   I  +++       
Sbjct: 712  WKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEND 771

Query: 564  AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---- 615
                      N V +MT+H +KGLE   VF+++   +         + +  +        
Sbjct: 772  LADVEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYV 831

Query: 616  -------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                       +   +            + L+ +T  E  RLLYV MTRA  +L +   +
Sbjct: 832  ADMRHELEEEILPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKA 891

Query: 669  NT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            +                    S E     + W   V++++   E    I   +     + 
Sbjct: 892  SQTKWADHYDLVSENNHLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDH 951

Query: 710  IAYEWSTHHPENTPL----EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--- 762
                 +   P N        + E I + +   +  +++    K  I  P +  PS +   
Sbjct: 952  HIGMVNPSLPFNPDNKVENRQSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKF 1011

Query: 763  -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                                   K    S          G  +H+L+Q I      K ++
Sbjct: 1012 YEPILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMED 1071

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSVSG--KINCP 858
               +    NA+   + +    +  I    +   +   +       + E   +   +    
Sbjct: 1072 IQKALTEVNAE--TSVKAAIQIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPES 1129

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             +  ++ G ID   + +  I +F+YKT   V      +   +  Q+++Y + LK SY  +
Sbjct: 1130 GEKFVVRGIIDGYLLLENRIILFDYKTDKFV--NPLELKERYQGQMALYAEALKKSYEIE 1187

Query: 919  SLVCLLIYVSEPKVFII 935
             +   LI +   ++ ++
Sbjct: 1188 KIDKYLILLGGKQLEVV 1204


>gi|22537037|ref|NP_687888.1| exonuclease RexA [Streptococcus agalactiae 2603V/R]
 gi|81588583|sp|Q8E061|ADDA_STRA5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|22533894|gb|AAM99760.1|AE014231_18 exonuclease RexA [Streptococcus agalactiae 2603V/R]
          Length = 1207

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 152/917 (16%), Positives = 311/917 (33%), Gaps = 122/917 (13%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIIN 155
             K+  +  + ++     +K    +L  L L +      +  Y + K +    +F D+   
Sbjct: 329  FKQLHNRIVGLKHLEVIFKYQGESLFLLELLQSFVLDFSEQYLQEKIQENAFEFSDIAHF 388

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               +L++      IR     + + +++DE QD +  Q  ++  L           S+   
Sbjct: 389  AIQILEENHD---IRQLYQDKYHEVMVDEYQDNNHTQERMLELL-----------SNGHN 434

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             F VGD KQSIY F  A+P+    + +  Q    +   +  +I L  +FRS +++L   +
Sbjct: 435  RFMVGDIKQSIYRFRQADPQIFNDKYKAYQ----DNPSQGKLIILKENFRSQSEVLDSTN 490

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             VF+   + +        + + ++    Q       +  V   D+  +   +S +  +D 
Sbjct: 491  SVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDIDDSDSQQYDI 550

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             P E      A+ +A  I  +   +          +  +DI +LV  R            
Sbjct: 551  SPAE------AKLVAKEIIRLHKEE---------NVPFQDITLLVSSRT----RNDGILQ 591

Query: 396  LKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
              + Y I  V           + +  ++   R I +  +D + V +L+SP+F F+EDD+ 
Sbjct: 592  TFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLT 651

Query: 455  KICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            +I  Q  +    +           +         SK  H +K        A++ S +D  
Sbjct: 652  RIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKTFQTWRDFAKWHSLYDLI 711

Query: 505  TLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I   +       +     +    L        + E+  +  L   I  +++       
Sbjct: 712  WKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEND 771

Query: 564  AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---- 615
                      N V +MT+H +KGLE   VF+++   +         + +  +        
Sbjct: 772  LADVEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYV 831

Query: 616  -------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                       +   +            + L+ +T  E  RLLYV MTRA  +L +   +
Sbjct: 832  ADMRHELEEEILPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKA 891

Query: 669  NT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            +                    S E     + W   V++++   E    I   +     + 
Sbjct: 892  SQTKWADHYDLVSENNHLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDH 951

Query: 710  IAYEWSTHHPENTPL----EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--- 762
                 +   P N        + E I + +   +  +++    K  I  P +  PS +   
Sbjct: 952  HIGMVNPSLPFNPDNKVENRQSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKI 1011

Query: 763  -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                                   K    S          G  +H+L+Q I      K ++
Sbjct: 1012 YEPILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMED 1071

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSVSG--KINCP 858
               +    NA+   + +    +  I    +   +   +       + E   +   +    
Sbjct: 1072 IQKALTEVNAE--TSVKAAIQIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPES 1129

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             +  ++ G ID   + +  I +F+YKT   V      +   +  Q+++Y + LK SY  +
Sbjct: 1130 GEKFVVRGIIDGYLLLENRIILFDYKTDKFV--NPLELKERYQGQMALYAEALKKSYEIE 1187

Query: 919  SLVCLLIYVSEPKVFII 935
             +   LI +   ++ ++
Sbjct: 1188 KIDKYLILLGGKQLEVV 1204


>gi|196248138|ref|ZP_03146840.1| recombination helicase AddA [Geobacillus sp. G11MC16]
 gi|196212922|gb|EDY07679.1| recombination helicase AddA [Geobacillus sp. G11MC16]
          Length = 1242

 Score =  349 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 146/1008 (14%), Positives = 327/1008 (32%), Gaps = 136/1008 (13%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
            E      +     L++   +   +E +  L S    +    + +    E+  ++  L+++
Sbjct: 258  EKRLREDMDLIADLERRL-SGSWDELYHALQSLSFGRLPPCRGDGFDAELIDEAKSLRDQ 316

Query: 100  ----LKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
                ++  +D    +        M +          L +  +A +E AK++  ++DF DL
Sbjct: 317  AKKKIEALRDNVFSLHPSAWLRHMREMKPVVETIAALVRRFSAMFEAAKREKGIVDFSDL 376

Query: 153  IINTNDLLK--KRDVSAW----IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
                  +L+    +   W       +   + + +L+DE QDT+L+Q  +++ +       
Sbjct: 377  EHYCLRILRQYDPETGEWQPSSAALEYQAQFDEVLVDEYQDTNLVQETILQLV------- 429

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
            K        LF VGD KQSIY F  AEP   L + +         G K   I+L  +FRS
Sbjct: 430  KKGSERTGNLFMVGDVKQSIYRFRLAEPMLFLDKYKRFTADGEAGGMK---IDLASNFRS 486

Query: 267  TADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
             A++L   + +F+    E    +  D    +++ +        V          +     
Sbjct: 487  RAEVLDGTNFLFAQIMGEAVGEMVYDEAAQLKYGADYPEGTDAV---------PEVMIID 537

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVR 381
            +Q +     +   +  +A + +R +A  I  ++       +   G++R    +DI+VLVR
Sbjct: 538  RQRTSEEDEEETAELEAAELESRLMAEKIKEIVSRPFYVYDRSSGQQRRAMYRDIVVLVR 597

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + P +    +       I    +          I  +++L + I +   D+    +L
Sbjct: 598  SMTNAPQMIEQLQA----QGIPAAADLSSGYFQATEISVMLSLLKVIDNPYQDIPLAAVL 653

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIH 493
            +SPLF F E+++  I     +                         K    +  + E   
Sbjct: 654  RSPLFRFDENELAMIRLSDPKGTFFEALQAFCQKTAETGEEENAKEKAISFLNKLEEWRT 713

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            +A+  S  D    +    +      +   G +    L    +   + E  S+  L   + 
Sbjct: 714  MARRRSLADLIWQLYRDTQFYDFVGALPGGKQRQANLRALYDRARQYESTSFRGLFRFLR 773

Query: 553  ELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             +E+           R      + VR+MT+H++KGLE P+VFLV      ++        
Sbjct: 774  FIERLQERGDDLGAARPLGDQEDVVRVMTIHSSKGLEFPIVFLVGLSRPFYTRDLHSPYL 833

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +   L           +       +  +    +     E  R+LYV +TRA ++L +   
Sbjct: 834  LDKELGFAARFVHPRLRISYPTLPLLAIQVKKRLELLAEEMRILYVALTRAKEKLYLLAS 893

Query: 668  SNTSNEK-------------------KSNQRTWYDMVYDS------------------FH 690
             N ++++                   +++ R++ D +  +                    
Sbjct: 894  VNDADKEIEKWKGVAAESGWLLPDDVRASARSYLDWIGRALIRHRDGRSLVEVNRPDEIA 953

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
            +   V + ++ ++                    LE+   +    + ++  ++        
Sbjct: 954  SHPSVWRFEIVSAAKLRNAEVSTDREDGGALVALEQGRPVPTQGEWEEEARRRLLWRYRY 1013

Query: 751  INEPYILNPSTIDTKGK-----------------------TNLESLLSDNQTFNRGLIIH 787
              E  +    ++    +                                     +G  +H
Sbjct: 1014 GKETVVRAKQSVSELKEQQALFGEQADEWLPRKGTAPLFSRPRFMQEKTLTPAEKGTALH 1073

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCD- 844
             +++ +         +  +       K   + E    +   +I       +     +   
Sbjct: 1074 VVMRHLDLHAPMDESSIRSQIIRLVEKELLSAEQAETVDAAAIVAFFATDIGRRLCAARE 1133

Query: 845  SYSEVSVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHV---PQ 891
             Y EV  S  +              + +++ G +D +   ++   + +YKT         
Sbjct: 1134 VYREVPFSLGLPADELYGSEGMESGRRLLVQGVVDCVFADERGYVVIDYKTDEVTGRFAG 1193

Query: 892  EIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            + E     +   +  Q+ +Y + ++  +      C L          +
Sbjct: 1194 QKEEATRFLLGRYGGQMRLYRRAIEQIWRVPVAECYLYSFDGEYFLAV 1241


>gi|116629672|ref|YP_814844.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
            gasseri ATCC 33323]
 gi|238854242|ref|ZP_04644586.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4]
 gi|122273390|sp|Q043G6|ADDA_LACGA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|116095254|gb|ABJ60406.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
            gasseri ATCC 33323]
 gi|238833053|gb|EEQ25346.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4]
          Length = 1204

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 159/936 (16%), Positives = 301/936 (32%), Gaps = 116/936 (12%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY---LNAHYEEAKKK 143
            Q+      DL ++LKK    F  + ++     + KS     T+      L   + + K++
Sbjct: 299  QDSQDLKLDLNDQLKKIFASFFVVEEKEQIAVLQKSEKIVKTIVAAEKKLIQKFSQLKRE 358

Query: 144  NCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              ++D+ D+      +L     +A I +    ++ N ILIDE QD + +Q  +I+++   
Sbjct: 359  QNLIDYSDMEQFAFSILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIKAI--- 415

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        TLF VGD KQSIY F  A P   L +     K           I L  
Sbjct: 416  ------KKKGQNTLFMVGDVKQSIYGFRQARPDLFLSKYHTYGKD-----NDSEKIILAD 464

Query: 263  SFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRST  +   V+ +F+     N  G+       ++  +S          +   +     
Sbjct: 465  NFRSTKRVTKTVNDLFNPILTTNFGGIDYKKEGQLQFGASY---------YPSDLPTASE 515

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
                 ++   S ++    +       + +   I  +   +    + +   KR ++  DI 
Sbjct: 516  YIFTDKKQTQSAYEDQYGDEMDFSEVQMVIARIKQLKAENFQVWDRRTQLKRPLEYSDIA 575

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            ++ R R D                + +   D         +  +M   R I + + D+  
Sbjct: 576  IITRTRSD----NLQVMQEFAKADLPLFVTDAQNYFQTFELIMIMNYLRLIDNPQQDIPL 631

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI--SKFQHVIKYIHELIHIA 495
            V +++SPLFNF E ++ +I  +              +       K +  ++ +  L   A
Sbjct: 632  VAVMRSPLFNFKEPELAQIRVKTPAGNFYTALTSFASVNSSLGKKCKEFLQQLETLRSFA 691

Query: 496  QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                  +    I       +       G +    L+         E   +  L + IS +
Sbjct: 692  ATHRISELIWSIYEKTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFI 751

Query: 555  EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            E+                  N V++MT+H +KGLE P+VF++  G Q  +        I 
Sbjct: 752  ERMRKNQKDLAQPLLSDKADNAVKLMTIHASKGLEFPIVFVMGLGHQYQTRDLSGNFTI- 810

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                ++ G+ I     +  + + S      ++   EE  R+LYVG+TRA  +LI+    N
Sbjct: 811  --SQNELGLTIKEKNYRIDSLVKSLADVQKRQQMLEEEARILYVGLTRAQQKLILVASVN 868

Query: 670  TSNEKKSNQRTWYDM-----------------------VYDSFHNDERVKKIKLTNSINK 706
                K+    +  D                        +      D+ ++ +        
Sbjct: 869  EIENKRKKWVSELDQKKDIIPLVKKINAQSPLDFLGPKLEQKHEFDQTIRDMTSALEEQD 928

Query: 707  DEWIAYEWSTHHPENT--------------------------PLEREETIKQLMDEQKIP 740
              +         PE                            P E            +I 
Sbjct: 929  KLYYLKFNLDLEPEKIKDQNEDSQEVNSNVNKVVKELYNFKYPFEDATKTTAYQSVSEIK 988

Query: 741  KKLFSPIKNDINEPYILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
            K    PI  ++    +++ S   +    +T              G  +H +LQ       
Sbjct: 989  KAFNDPIDTELENSRLISSSNRYLQPIDETPTFLEGQKFTGAEIGTAMHLVLQYYNYEGN 1048

Query: 799  HKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS-- 852
              ++N               +    +L                        + E   S  
Sbjct: 1049 KDQENLDQEIDQLVELGKLNSLMVPHLSKEALNWFVMSDFAKEFWKQPDKLHRESQFSSL 1108

Query: 853  -------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHI 901
                      + P   +++ G +D    ++  + +F+YKT        E     I   + 
Sbjct: 1109 VNASELFNDFSDPSAKVLVHGTVDGYFEAKDGLILFDYKTDFVDKTNEEQAIEKIKQKYT 1168

Query: 902  AQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIP 936
             QL +YE+ L +   +K +    LI +   KV  + 
Sbjct: 1169 GQLRLYEQALNEMNNDKKVIGKYLILLDARKVVPVD 1204


>gi|315924912|ref|ZP_07921129.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter
            alactolyticus ATCC 23263]
 gi|315621811|gb|EFV01775.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter
            alactolyticus ATCC 23263]
          Length = 1178

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 164/953 (17%), Positives = 313/953 (32%), Gaps = 121/953 (12%)

Query: 63   EERFSLLSSFFLTQK-----FTPQKNIITQEINK----KSPDLKEKLKKSQDEFIKIRDR 113
             + + +      T K      + +    + +I          +K+ +K+ +    ++ + 
Sbjct: 268  ADEWQVFQQALQTFKFDSYSGSKEDKETSNKIKDLRTATIKPIKDLVKQFKRPLPEMLED 327

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                 M     A + L K  +  +   KK+  +LDF D+      +L    ++      +
Sbjct: 328  LQA--MAAPMTALIDLTKAFDTEFARLKKEREMLDFHDIERYAQAILANDTIAVT----L 381

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             +    + IDE QDT+ +Q  ++  +                 F VGD KQSIY F  A+
Sbjct: 382  QKRYIQVFIDEYQDTNAVQEAILSRV-----------RRADNYFMVGDVKQSIYRFRQAD 430

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P   + + +  QK+   A     +I L  +FRS   I+  V+ VFS   + +        
Sbjct: 431  PTIFIEKYQRFQKQGRAAD---RLITLGQNFRSNQGIIDCVNDVFSRIMSPELGEIAYDD 487

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                           +  E                   +       +     AR IA  I
Sbjct: 488  EAALICGLADSTHPAEPAEL------------------HVLQASASNHIEAEARYIAGRI 529

Query: 354  SNMIGTDT-IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
              M+G +  I   G  R ++ +DI VL+R              +  D  I    +     
Sbjct: 530  HEMVGKEQWIAKEGVSRPLRYRDIGVLMRSVSSK---GETVARILADAGIPTYFDAGASY 586

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--EYI 470
               + I   + L R I + + DL  + +++SP+  FS++++  I             E  
Sbjct: 587  YQSIEIIVFLNLIRVIDNYQQDLPLLSVMRSPIGRFSDEELAAIRIGAKNRPFYQSLEAA 646

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
             +       K +  + ++      A   S  DF   +           +   G +    L
Sbjct: 647  AETKTALGQKARMFLDHLERWRKFAYTQSVADFLWRLYLETGYYTAVGALPGGEQRQKNL 706

Query: 530  DEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGL 583
               L      +  +   + +     +      Q         S N + VRIMT+H +KGL
Sbjct: 707  RVLLQRASDYQTATLHGVFQFPDYAQPLTKRRQGDVMTPSILSENDDVVRIMTIHKSKGL 766

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E PVVFL D G          K+H    L   P       +        + + + +K  +
Sbjct: 767  EFPVVFLADCGKGANLKNATGKVHFHQKLGICPKWIDPSAKLYHDTLATTLVQEQVKTES 826

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-----------------TWYDMVY 686
              E  RLLYV MTRA  +LI+        ++K                     ++ D + 
Sbjct: 827  LSEEIRLLYVAMTRAMAKLIMVGSVTDLEKEKERWEKPCMVGNLKKGRQGSGVSYLDWLM 886

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
             + +     +         K E           E    + E + KQL + ++     +  
Sbjct: 887  MACYRPGAAQNSVSPALKIKIE-EETTREAVTQERPIQQLELSSKQLQEIKRRLSWHYQS 945

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLL------------SDNQTF--------NRGLII 786
                   P  L+ + ++   +                   +  +            G  I
Sbjct: 946  AGRP--APSKLSVTQVEHLRENPDRGADALIEIPERMAKPAFMEAAGLRHWQPSELGSGI 1003

Query: 787  HKLLQVIFTL-------PEHKRKNFITSYCTKNAKL--WPAKEYKNL-LLSITRLLENPM 836
            H LLQ I             +  + + +   + A+L    A   K L L  + RL+ +P+
Sbjct: 1004 HTLLQRIDLDGIRACGGDTAQIADAVRAEAARLAELGILEAALVKALDLRPVVRLMGSPI 1063

Query: 837  MTTAMSC-DSYSEVSVSGKINCP-------KKDIIISGRIDQISISQQNIFIFEYKTHH- 887
                +       E+  +  +          ++ +++ G ID   I      + +YKT   
Sbjct: 1064 GKRLLQAVTCRRELPFNLAVPGRRINPIYGEETVLLQGMIDCCFIEDDRWILLDYKTDRW 1123

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIPQNK 939
            H  +  + +   +  Q+  YE+ L      + +    L++++  +   +   +
Sbjct: 1124 HSQEARDRLIARYQIQIDFYEQALAAI-TGRPVAEKYLLFITMGEAVRLSPAE 1175


>gi|323464966|gb|ADX77119.1| exonuclease RexA [Staphylococcus pseudintermedius ED99]
          Length = 1214

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 153/1013 (15%), Positives = 326/1013 (32%), Gaps = 145/1013 (14%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE--- 88
              Y    +    P  +   +  +Q  +    E+     +         P K    +E   
Sbjct: 233  EAYHQFELVGDFPKHIDFIEGHRQFLRRLLSEQLIDKTALATYQLGRIPPKPKAVKEDPM 292

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRF----------NTYKMFKSTLASLTLAKYLNAHYE 138
            ++    + K   ++ ++    ++  F              +        TL + +   + 
Sbjct: 293  LDAAYENFKAHYEQFKNNLNAVKSTFVGRDDETLLEELQHLAPRVKYLATLTEDVIHAFS 352

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             AK+   +LDF D       +L+      + I     +    IL+DE QDT+ +Q  +I 
Sbjct: 353  RAKRARNILDFSDYEHFALQILRDEQGEPSEIAALYRERFEEILVDEYQDTNRVQESIIG 412

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            S+            S   LF VGD KQSIY F  A+P   + + +   +           
Sbjct: 413  SIKR-------GDESNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFNQ---PDQSSGWR 462

Query: 258  IELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            I+L  +FRS  ++L+  + +F    +A    +  D+   + + +        VQ    + 
Sbjct: 463  IDLSQNFRSRKEVLSTTNYLFDHMMDAEVGEIDYDAAAKLYYGAPYDEVDIPVQFNVLM- 521

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQA 373
                              D   + +++   A  IA  +  ++ T  ++    G  R  Q 
Sbjct: 522  -----------------VDKDREMTASEQEAYFIAQQVQTILETQKVYDPKTGAYRPAQY 564

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            KDI++L R   +  LI    +    D  I +  N +    +   I+ +++  R I +   
Sbjct: 565  KDIVILERSYSNVRLIQQAFK----DQDIPLFVNSKQGYFEQTEIRLMLSFLRTIDNPLQ 620

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKY 487
            D+  V +++S ++ F+ED++ KI     +    Y+ IQ + +   +      K +  +  
Sbjct: 621  DIYLVGLMRSVIYQFTEDELAKIRIVSPQDNYFYQSIQHYMDDEAADPAIVAKLKPFLND 680

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSS 546
            +      +Q    +     +       Q F +  G       L    N  +  E +S+  
Sbjct: 681  LARYQDYSQRHPVYQLIDKLFNDHYIIQYFSALVGGRGRRANLHGLFNKAVDFENSSFRG 740

Query: 547  LQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            L + I  ++Q     K     N      N VR+MT+H++KGLE P V           + 
Sbjct: 741  LFQFIRFIDQMIERGKDFGEENVIGPNDNVVRMMTIHSSKGLEFPFVIYSGLTRDFNKND 800

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              K + +                    + I   +    +K    E  RL+YV +TRA +Q
Sbjct: 801  LGKPVVLNQHAGLGLQYYDEAQGLFYPSLISMSIDLINQKELISEEMRLMYVALTRAKEQ 860

Query: 662  LIICKHSNTSN------------------------------------------EKKSNQR 679
            L +   S  ++                                          ++     
Sbjct: 861  LYLIGTSKKADALEMMAAATITDEKLAAIDRFNAKNPFQLIYSILSKHQNTNIQRHQRFE 920

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
               + +  +     +++ I   + +  ++ +A                  +   + ++ +
Sbjct: 921  VDVETLDAAVKPRLQLQHIDAGDVLPTEQDLATYQGHAIEALEARLAATPLDDELAQRVM 980

Query: 740  PKKLF-SPIKNDINEPYILNPSTID----------------------TKGKTNLESLLSD 776
             + L+  P +  + +    + S +                          +         
Sbjct: 981  QQLLYVYPYQQAVQQVSKQSVSELKRQLDTEQADTNYERVRQYRLGVATYERPQFLQEQQ 1040

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLE 833
            +     G ++H ++Q +           +  Y        +  A +   + +  I R ++
Sbjct: 1041 HTAAEVGTLMHTVMQHLPFKEAGLTDQALNDYIESLVERSIIRAHDVNVIVIEEIKRFIQ 1100

Query: 834  NPMMTTAM-SCDSYSEVSVSG------KINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
            + +      S + Y+E+                   II G ID +     + +  +YKT 
Sbjct: 1101 SDLYDRIARSDEVYTELPFVVNQHQVEHTPDTTDASIIQGMIDLVFKENGHYYFLDYKTD 1160

Query: 887  HH-------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
                            +   +  Q+  Y++ L+       +   L +    ++
Sbjct: 1161 ALIRRKGMSDEALERQLKEKYRVQMQYYQRALETIL-KCPVNGYLYFFKYGEL 1212


>gi|257892416|ref|ZP_05672069.1| UvrD/REP helicase [Enterococcus faecium 1,231,408]
 gi|257828795|gb|EEV55402.1| UvrD/REP helicase [Enterococcus faecium 1,231,408]
          Length = 924

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 153/941 (16%), Positives = 304/941 (32%), Gaps = 124/941 (13%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           +++ KS       +    T K          + +     +   K++  VLDF DL     
Sbjct: 3   QQISKSYFPVSPSQMEELTDKALPLVEEMTKVTQSFMDGFSMRKREKGVLDFNDLEHLAL 62

Query: 158 DLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            +L ++    W+         ++   +++DE QD + +Q  ++  L E          + 
Sbjct: 63  QILTEKTKDVWLPSEASKHYRKKFKEVMVDEYQDVNQLQEAILYWLRE-------PDDTK 115

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             +F VGD KQSIYSF  A+P   + +     K+     +    I L  +FRS  ++L+ 
Sbjct: 116 GNMFMVGDVKQSIYSFRLADPSLFIGKYENFSKK-----EGGRRIVLAENFRSRKEVLSF 170

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + +F    +      +     +            Q   +++     Q   + E  T   
Sbjct: 171 TNLIFEQLMDPAVGQINYDEAAKLIQGFSDFPENEQFEPEIMIYEKEQEESEIEIPTDDI 230

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLIT 390
                E    +        I  +I +  +  + K    R I+ KDI++L   +K+   I 
Sbjct: 231 LEDKTEGELFMT----GLKIRQLIDSSFMIYDKKSKKSRPIEYKDIVLLTPTKKNNLTIL 286

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
            + + L     I +  ND         I+ +++L + I +   D+    +L+SP+    E
Sbjct: 287 EIFKTL----DIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIE 342

Query: 451 DDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            ++  I          + V  Y     +   +K +H  K +     +A+  S  D    I
Sbjct: 343 PELASIRLANRAHTYYDAVLAYQASNEDELAAKLEHFGKQLEHWRELARRSSITDLLWDI 402

Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                  +  +    G +    L   ++     EQ+S+  L + +  +E+     K    
Sbjct: 403 YYETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAE 462

Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                  N VR+MT+H +KGLE PVVFL+D   +        +      L          
Sbjct: 463 PVISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPE 522

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------- 673
            +          +    +     E  R LYVG+TRA  +L I        +         
Sbjct: 523 TRVLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAA 582

Query: 674 -----------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SI 704
                      +   + +  + +         ++K                       + 
Sbjct: 583 DHEELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQ 642

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                     +     N   + +E    L D  +       P +         + S I  
Sbjct: 643 QSIIEQRQLLAEKELVNLDQQMKEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKR 702

Query: 765 KGKTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQ 791
             +   ++  S                                        G   H LLQ
Sbjct: 703 LFEDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQ 762

Query: 792 VIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSE 848
           ++   +P  +  +       +   +      K  + SI    +  +    ++   +   E
Sbjct: 763 LLPLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKRE 822

Query: 849 VSVSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEH 895
              S  +            + +++I G +D     + ++ I+++KT        P EI+ 
Sbjct: 823 QPFSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDA 882

Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
           I   +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 883 IVQKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 922


>gi|295424857|ref|ZP_06817572.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM
            11664]
 gi|295065423|gb|EFG56316.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM
            11664]
          Length = 1199

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 164/972 (16%), Positives = 312/972 (32%), Gaps = 121/972 (12%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKN-IITQEINKKSPDLKEKLKKSQDEFIKIRD 112
            +  +      E    L S     +  P+K+    +++ +     ++   +++++   I  
Sbjct: 260  KGLNDDLDYNELRERLRSCIF--ELKPRKSSKWDEDLQEFYQTTQDLKAEAKNQIFDIFT 317

Query: 113  RFNTYKMFKSTLASL----------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             F      +                   + L  H+ E K    +LD+ D+      +L  
Sbjct: 318  AFFASDEDEQIKVMHHGQKIMKTIVKAEEALIKHFGELKAAENLLDYSDMEQFAYQILSS 377

Query: 163  RDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                ++  R     +   IL+DE QD + +Q  +I+++ +             T+F VGD
Sbjct: 378  DTSNASLARDFYRDKFKEILVDEYQDINPLQENIIQTIKDK---------DKNTVFMVGD 428

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             KQSIY F  AEP   L++     ++   +      I L  +FRST  +  +V+ +F   
Sbjct: 429  VKQSIYGFRQAEPSLFLKKYHDFGQK---SDSSQERILLSDNFRSTRPVTKIVNHLFKPL 485

Query: 282  ENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             +    G+   S   +   ++          +   + Q       ++ S  S  D     
Sbjct: 486  LSRNFGGIDYKSEGQLVFGANY---------YPAHLDQACEVIFHEKSSANSDDDQDIDF 536

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            S   ++  RI +     +        GK R  +  DI +L R R D              
Sbjct: 537  SEIQMVINRIKHFEKEKL-QVFDSHMGKLRPFRYSDIAILTRSRSD----NLQIMQEFAK 591

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              + +   D         +  +M   + I + + D+  V +L+SPLF F E D+ KI  +
Sbjct: 592  NDLPLFVTDAQNYFQTFELTIMMNYLKIIDNPDQDIPLVTVLRSPLFGFDEKDLAKIRIK 651

Query: 460  RHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
              +T             +    + +  +  +  L   A      +    I       +  
Sbjct: 652  NKQTSFYSALLAYVASNDSLSQRIKDFLNKLDSLRDFAATHRISELIWSIYERTNLLEIM 711

Query: 518  IS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNE 571
             +   G +    L+         E + +  L + I+ +      Q             N 
Sbjct: 712  TALPNGQQRRVNLEALYERANSYESSGFKGLYQFINFINRMRRSQKDLAQPLLTKEAGNA 771

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            VR+MT+H +KGLE P+VF V            +   I  S     G+ I   +    + +
Sbjct: 772  VRLMTIHGSKGLEFPIVFYVGMEHHYQMRDLTRNYVITGSSL---GLTIKESKYCLDSLV 828

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---VYDS 688
             +    + KK   EE  R+LYV +TRA  +L++       ++K  + +   ++   +  +
Sbjct: 829  KAIDNVNKKKQLLEEEARILYVALTRAKQKLVMVGDIANFDKKVQSWKNKLNLKDKLSLA 888

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE---------REETIKQLMDEQKI 739
                       +  ++  D  IA + +   P     E         + + +    +++  
Sbjct: 889  DKLSSNSALSFIGPALAFDRHIAQKMNDISPAIDQTEDLIYIKYDDQLKPVPNGQEDKTN 948

Query: 740  PKK-------------LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--------- 777
              +                P  +          S I       L++ L ++         
Sbjct: 949  NDEYDLLNETTKKLFNFTYPFNDASKTTAYQAVSEIKKAFNDPLDTDLENSHLIASTNRY 1008

Query: 778  ----------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                                 G   H +LQ        + +           K       
Sbjct: 1009 LQPIDDKPNFLFETKFTGAEIGTATHLILQYYDYCDRQEGQLADEIKTLITQKKLNPDIV 1068

Query: 822  KNLLLSITRLLENPMMTTAMSCD---SYSEVSVS---------GKINCPKKDIIISGRID 869
             ++         N                EV  S            + P   I++ G ID
Sbjct: 1069 PSIHQDQINWFVNSDFAQEFWKHPDRLKREVDFSSLLSAKTLFKDFSDPNAKILVHGTID 1128

Query: 870  QISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLV-CLL 924
                    I +F+YKT H     +E     I   +  QL +YEK L + +  K++    L
Sbjct: 1129 GYYEDHDGIILFDYKTDHVDQTHLERAIAAIKAKYAGQLRLYEKALTE-FSGKNVKSKYL 1187

Query: 925  IYVSEPKVFIIP 936
            I +   KV  + 
Sbjct: 1188 ILLDAKKVVKVD 1199


>gi|138894263|ref|YP_001124716.1| ATP-dependent nuclease subunit A [Geobacillus thermodenitrificans
            NG80-2]
 gi|251764525|sp|A4IKW7|ADDA_GEOTN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|134265776|gb|ABO65971.1| ATP-dependent nuclease, subunit A [Geobacillus thermodenitrificans
            NG80-2]
          Length = 1242

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 146/1008 (14%), Positives = 327/1008 (32%), Gaps = 136/1008 (13%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
            E      +     L++   +   +E +  L S    +    + +    E+  ++  L+++
Sbjct: 258  EKRLREDMDLIADLERRL-SGSWDELYHALQSLSFGRLPPCRGDGFDAELIDEAKSLRDQ 316

Query: 100  ----LKKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
                ++  +D    +        M +          L +  +A +E AK++  ++DF DL
Sbjct: 317  AKKKIEALRDNVFSLHPSAWLRHMREMKPVVETIAALVRRFSAMFEAAKREKGIVDFSDL 376

Query: 153  IINTNDLLK--KRDVSAW----IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
                  +L+    +   W       +   + + +L+DE QDT+L+Q  +++ +       
Sbjct: 377  EHYCLRILRQYDPETGEWQPSSAALEYQAQFDEVLVDEYQDTNLVQETILQLV------- 429

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
            K        LF VGD KQSIY F  AEP   L + +         G K   I+L  +FRS
Sbjct: 430  KKGSERTGNLFMVGDVKQSIYRFRLAEPMLFLDKYKRFTADGEAGGMK---IDLASNFRS 486

Query: 267  TADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
             A++L   + +F+    E    +  D    +++ +        V          +     
Sbjct: 487  RAEVLDGTNFLFAQIMGEAVGEMVYDEAAQLKYGADYPEGTDAV---------PEVMIID 537

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVR 381
            +Q +     +   +  +A + +R +A  I  ++       +   G++R    +DI+VLVR
Sbjct: 538  RQRTSEEDEEETAELEAAELESRLMAEKIKEIVSRPFYVYDRSSGQQRRAMYRDIVVLVR 597

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + P +    +       I    +          I  +++L + I +   D+    +L
Sbjct: 598  SMTNAPQMIEQLQA----QGIPAAADLSSGYFQATEISVMLSLLKVIDNPYQDIPLAAVL 653

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIH 493
            +SPLF F E+++  I     +                         K    +  + E   
Sbjct: 654  RSPLFRFDENELAMIRLSDPKGTFFEALQAFCQKTAETGEEENAKEKAISFLNKLEEWRT 713

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            +A+  S  D    +    +      +   G +    L    +   + E  S+  L   + 
Sbjct: 714  MARRRSLADLIWQLYRDTQFYDFVGALPGGKQRQANLRALYDRARQYESTSFRGLFRFLR 773

Query: 553  ELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             +E+           R      + VR+MT+H++KGLE P+VFLV      ++        
Sbjct: 774  FIERLQERGDDLGAARPLGDQEDVVRVMTIHSSKGLEFPIVFLVGLARPFYTRDLHSPYL 833

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +   L           +       +  +    +     E  R+LYV +TRA ++L +   
Sbjct: 834  LDKELGFAARFVHPRLRISYPTLPLLAIQVKKRLELLAEEMRILYVALTRAKEKLYLLAS 893

Query: 668  SNTSNEK-------------------KSNQRTWYDMVYDS------------------FH 690
             N ++++                   +++ R++ D +  +                    
Sbjct: 894  VNDADKEIEKWKGVAAESGWLLPDDVRASARSYLDWIGRALIRHRDGRSLVEVNRPDEIA 953

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
            +   V + ++ ++                    LE+   +    + ++  ++        
Sbjct: 954  SHPSVWRFEIVSAAKLRNAEVSTDREDGGALVALEQGRPVPTQGEWEEEARRRLLWRYRY 1013

Query: 751  INEPYILNPSTIDTKGK-----------------------TNLESLLSDNQTFNRGLIIH 787
              E  +    ++    +                                     +G  +H
Sbjct: 1014 GKETVVRAKQSVSELKEQQALFGEQADEWLPRKGTAPLFSRPRFMQEKTLTPAEKGTALH 1073

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCD- 844
             +++ +         +  +       K   + E    +   +I       +     +   
Sbjct: 1074 VVMRHLDLHAPMDESSIRSQIIRLVEKELLSAEQAETVDAAAIVAFFATDIGRRLCAARE 1133

Query: 845  SYSEVSVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHV---PQ 891
             Y EV  S  +              + +++ G +D +   ++   + +YKT         
Sbjct: 1134 VYREVPFSLGLPADELYGSEGMESGRRLLVQGVVDCVFADERGYVVIDYKTDEVTGRFAG 1193

Query: 892  EIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            + E     +   +  Q+ +Y + ++  +      C L          +
Sbjct: 1194 QKEEATRFLLGRYGGQMRLYRRAIEQIWRVPVAECYLYSFDGEYFLAV 1241


>gi|56417018|ref|YP_154092.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries]
 gi|56388250|gb|AAV86837.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries]
          Length = 867

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 182/641 (28%), Positives = 314/641 (48%), Gaps = 34/641 (5%)

Query: 38  SMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSSFFLTQKFTPQKNII---TQEINKKS 93
           +++ G+    K  + L    + T+   E  +   S F+  +   +K+I    T+ I ++ 
Sbjct: 217 ALKCGSTRDQKIGKRLSTWNTSTRRSPEEVAEYLSIFINLQSLAKKSISSIVTKGILEQF 276

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
           PD+   ++  Q+  ++  ++F T ++ K T   + +A+   A YE+ KK +  LD+ D+I
Sbjct: 277 PDIVRVIECEQEALLEFAEKFYTERITKRTFHLVRIAQKCAALYEQDKKCSKYLDYNDVI 336

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             T DL+   D   W+ +++D EI+HIL+DE QD SL QW ++ +L  +FF G  + ++ 
Sbjct: 337 GLTLDLMLHPDCKDWVLFRLDSEIDHILVDESQDNSLEQWNIVAALCSEFFSGLGSSNNK 396

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           RTLF VGD KQSIY F  A P    R  +               I+L  SFRS   IL +
Sbjct: 397 RTLFVVGDVKQSIYGFQNARPDYFHRMHQYF----VAQSSDALTIQLQTSFRSAKPILHL 452

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
           VD+VF+     +      +  I+H + R    G V++W  + ++   +     E      
Sbjct: 453 VDRVFN---AFREQVSFQSQEIKHEAYRASDYGYVEVWPLINTEKRRKLYAWDELEVETG 509

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                +    +LA+ +A +I   I +  I    K R ++A DIL+LVR+R    ++    
Sbjct: 510 TPHATDH--LLLAQTMARSIGTWIQSGRIL-AAKNRPVRAGDILILVRRRT---ILVDYI 563

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   + V G DRF + D++AI+DL+ LG F+L  E+D++   +LKSP+F  ++ D+
Sbjct: 564 IAELRQAGVPVSGRDRFNMMDYVAIQDLVNLGEFLLLPENDMALAALLKSPIFELTDHDL 623

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             +   R +  +++  +Q FA      F  +  Y+  LI+ ++  +P D + L+L     
Sbjct: 624 LNLTHSRADAVSLWGKLQAFAQ-----FGKIADYLVSLINASKTRAPLDLYCLVLSEH-- 676

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           R++ +   G    +++DEF+N   +   N+ ++L+  I  ++   P +K   + + +  R
Sbjct: 677 REKLLQHPGQASAEIVDEFMNSLTKFGLNNVNTLESFIHWIKSTNPEVKIDINTSEDVAR 736

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MTVH AKG++SP+VFL DT +             +  + D    PIW       N    
Sbjct: 737 VMTVHNAKGMQSPIVFLPDTTNVPR--------CELQLIFDAENTPIWCAG--DTNARCR 786

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           DL    ++    EY RLLYV MTRA D+L +        + 
Sbjct: 787 DLKTLKRQEEYNEYLRLLYVAMTRAEDELYVAGVGPPREQS 827


>gi|319744909|gb|EFV97242.1| ATP-dependent nuclease subunit A [Streptococcus agalactiae ATCC
            13813]
          Length = 1208

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 153/917 (16%), Positives = 312/917 (34%), Gaps = 122/917 (13%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIIN 155
             K+  +  + ++     +K    +L  L L +      +  Y + K +    +F D+   
Sbjct: 330  FKQLHNRIVGLKHLEVIFKYQGESLFLLELLQSFVLDFSEQYLQEKIQENAFEFSDIAHF 389

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               +L++      IR     + + +++DE QD +  Q  ++  L           S+   
Sbjct: 390  AIQILEENHD---IRQLYQDKYHEVMVDEYQDNNHTQERMLELL-----------SNGHN 435

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             F VGD KQSIY F  A+P+    + +  Q    +   +  +I L  +FRS +++L   +
Sbjct: 436  RFMVGDIKQSIYRFRQADPQIFNDKYKAYQ----DNPSQGKLIILKENFRSQSEVLDSTN 491

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             VF+   + +        + + ++    Q       +  V   D+  +   +S +  +D 
Sbjct: 492  SVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDIDDSDSQQYDI 551

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             P E      A+ +A  I  +   +          +  +DI +LV  R            
Sbjct: 552  SPAE------AKLVAKEIIRLHKEE---------NVPFQDITLLVSSRTR----NDGILQ 592

Query: 396  LKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
              + Y I  V           + +  ++   R I +  +D + V +L+SP+F F+EDD+ 
Sbjct: 593  TFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLT 652

Query: 455  KICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            +I  Q  +    +           +         SK  H +K        A++ S +D  
Sbjct: 653  RIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKIFQTWRDFAKWHSLYDLI 712

Query: 505  TLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I   +       +     +    L        + E+  +  L   I  +++       
Sbjct: 713  WKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEND 772

Query: 564  AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---- 615
                      N V +MT+H +KGLE   VF+++   +         + +  +        
Sbjct: 773  LADVEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYV 832

Query: 616  -------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                       +   +            + L+ +T  E  RLLYV MTRA  +L +   +
Sbjct: 833  ADMRHELEEEILPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKA 892

Query: 669  NT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            +                    S E     + W   V++++   E    I   +     + 
Sbjct: 893  SQTKWADHYDLVSENNHLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDH 952

Query: 710  IAYEWSTHHPENTPLERE----ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--- 762
                 +   P N   + E    E I + +   +  +++    K  I  P +  PS +   
Sbjct: 953  HIGMVNPSLPFNPDNKAENRQSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKF 1012

Query: 763  -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                                   K    S          G  +H+L+Q I      K ++
Sbjct: 1013 YEPILDIEGVDVMETITKTSVDFKLPDFSTSKKKDPAALGSAVHELMQRIEMSSHVKMED 1072

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSVSG--KINCP 858
               +    NA+   + +    +  I    +   +   +       + E   +   +    
Sbjct: 1073 IQKALTEVNAE--TSVKAAIQIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPES 1130

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             +  ++ G ID   + +  I +F+YKT   V      +   +  Q+++Y + LK SY  +
Sbjct: 1131 GEKFVVRGIIDGYLLLENRIILFDYKTDKFV--NPLELKERYQGQMALYAEALKKSYEIE 1188

Query: 919  SLVCLLIYVSEPKVFII 935
             +   LI +   ++ ++
Sbjct: 1189 KIDKYLILLGGKQLEVV 1205


>gi|331002448|ref|ZP_08325966.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str.
            F0167]
 gi|330410264|gb|EGG89698.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str.
            F0167]
          Length = 1148

 Score =  348 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 153/892 (17%), Positives = 299/892 (33%), Gaps = 94/892 (10%)

Query: 87   QEINKKSPDLKEKLKKSQ-DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
            + +     D   KL +    +  ++ +     K      A + L K   A + E K++  
Sbjct: 288  KALRDNYKDTISKLAQEYLFDKERLLEEEGKEKS--KVRAIVDLTKKYIALFNEKKREKN 345

Query: 146  VLDFEDLIINTN-DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++DF D+       LL +      +     +E + I IDE QD++ +Q  ++ ++     
Sbjct: 346  LVDFSDIEHLALGILLDEDKKPTEVALSYKREFSEIYIDEYQDSNYLQEAIVMAI----- 400

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA--GQKFSIIELPL 262
                       +F VGD KQSIY F  A P+  + + +           G+    + L  
Sbjct: 401  -------EKNNIFMVGDVKQSIYGFRQASPELFMDKYKRFSHFKNTNLEGEDAKKVILSK 453

Query: 263  SFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRS  ++L   + +F     E+  G+  D    +   +                   + 
Sbjct: 454  NFRSRNNVLKSANIIFKKVMKEDIGGIEYDDDAALYPGADF----------------EEG 497

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                 +   T         SS  + AR IA  I  +            R ++  DI++LV
Sbjct: 498  NEYISEIMLTETGGIEDDTSSIELEARAIAQRIKELKSE---LRVDGGRKLRYSDIVILV 554

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R       I      + ND  I     +         ++ ++A+   I +   D+     
Sbjct: 555  RTN-----IGEGIAKVLNDENIPAYAENNKGYFKTFEVRKILAVLAAIDNPYSDVDLCAF 609

Query: 441  LKSPLFNFSEDDIFKI--------CTQRHETETVYEYIQ------KFANCGISKFQHVIK 486
            L S L   ++ ++  I          ++ E   + + I         +     K Q+ IK
Sbjct: 610  LNSSLVGITDLEMANIVSDYRKAQNIEKSEKIRMMDAILYENESGDISEETRKKIQNAIK 669

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYS 545
            ++++    + + +       I           +  G +     L   +N       + YS
Sbjct: 670  FLNKYRKKSAYMNIAALLQDIYNETDFLNLISAMPGGQVRRANLMLLINKAGTFSNSGYS 729

Query: 546  SLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             L   I  + +                N + VRIMT+H +KGLE PV FL          
Sbjct: 730  GLYNFIRYISKLKDFDNDFGEASILSENDDIVRIMTIHKSKGLEFPVCFLACANKLFNKM 789

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               + M I                 K  +   + +   L      E  R+LYV +TRA +
Sbjct: 790  DLKQGMVIDSEFGLGVQYVDSKKNIKDSSIKQNVIKHKLNADLMGEELRVLYVALTRAME 849

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            ++II       ++     +   + +     N      +   ++++ D            E
Sbjct: 850  KMIISGSCKDVDKALEKNKDNPNFLDIRSCNSYLDMILLSFDNVHFDIRKYDYTMLLKEE 909

Query: 721  NTPLEREETIKQLMDEQKIPK--------KLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                +    + ++ +   I +            P   +I+     + S I    ++    
Sbjct: 910  KETQKEVGDLHKVFESIDIKEHNILKNRLDYVYPYFENIDLKTKFSVSEIKKLSQSEEFE 969

Query: 773  LLS-------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL- 824
            +          +    RG   HKLLQ +       + + I  +  +   L   K+Y+ L 
Sbjct: 970  IKDVKRAKSNSSDASERGNAYHKLLQKM-HYENIGKFSDIKDFIREEISLLKNKKYRELI 1028

Query: 825  -LLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCP-------KKDIIISGRIDQISIS 874
             +  I + L   +    +        E      ++          + I+I G ID    +
Sbjct: 1029 DIDDIVKFLNTNLGGEFVKQHQNLKRENQFIMGLSAKEAGMGSSDETILIQGVIDAYIEN 1088

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +  I + +YKT +      + +   + +QL +Y+K L+     K++  + IY
Sbjct: 1089 ENGIILVDYKTDNV--NNEDVLINRYRSQLMLYKKSLE-MSTGKTVQTVYIY 1137


>gi|304317472|ref|YP_003852617.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM
            571]
 gi|302778974|gb|ADL69533.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM
            571]
          Length = 1088

 Score =  348 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 165/914 (18%), Positives = 311/914 (34%), Gaps = 98/914 (10%)

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS----LTLAKY 132
            K  P K ++  +   +   L  ++K++      +   +   +  +ST A     + + K 
Sbjct: 173  KKYPSKIVVNGKFEAELISLMNRIKETGLRIDDV-KLYEGEEYDESTKAMELLTVRIIKK 231

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            ++  Y+  KK+  +LDF DL I    LL         R    +   +IL+DE QD + IQ
Sbjct: 232  IDEEYDRFKKERNLLDFNDLEIAALKLLSDDSK----RDSYFERYKYILVDEFQDINQIQ 287

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
              +I  L E   V          LF VGD KQSIY F G +        RI ++      
Sbjct: 288  KRIILKLAEKNGVIPEGR-----LFIVGDYKQSIYGFRGTD-------YRIFEEFCEKIK 335

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQG--------LSEDSTTTIRHRSSRIGQ 304
            ++  ++ L   +RST +I+  V+ VF                        I +    I  
Sbjct: 336  KEGDVLNLSNCYRSTKNIICTVNSVFKNLLEPYEELKYLNDTEEGPKVELITYNKQNIAD 395

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                + ++ +          ++   +   D    ES        IA  I  ++       
Sbjct: 396  P-RNERFQSIKKLLKDDSKSEELHESLMKDIKKSESKRDFQGSIIASRILKLLDEG---- 450

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                   + +DI +L+R R     +          Y I           D   I D+++L
Sbjct: 451  ------YKYEDIAILLRSRTGLESVENAL----LKYGIPYCVIGGIGFWDKSEIIDIISL 500

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC--TQRHETETVYEYIQKFANCGI---S 479
             + +    D ++ + +L+SP+F FS+DD++ +           + E ++K          
Sbjct: 501  YKLVFDMSDKIALLVVLRSPIFGFSDDDVYNLMSIYNDEGLSNILEALEKLTCINRSNEW 560

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538
                    + E+ ++      ++ F  IL     ++  IS   G +    +++       
Sbjct: 561  IIVRAYNILKEISNLNGIYGAYEIFEKILDLVDYKKLLISLPNGYQKYRNIEKLEKIIKD 620

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDT 593
                   + ++L+  L  +                 + V+I+T+H +KGLE   V + D 
Sbjct: 621  FTDKDIFNARDLVEYLSSFKEFSGLDSEAFLDTEESDAVKILTIHASKGLEFEAVIIPDM 680

Query: 594  G---SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  V    +   M          G+       K  N+          +   +E  RL
Sbjct: 681  DKATDGVSIRHNHLFMLSEDGYMYGIGVNEEGELDKEANSRYKSAYDEYLERENQESRRL 740

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDE-RVKKIKLTNSINK 706
             YV  TRA   L           +  N+    ++   ++ +   D+  +  +   + +  
Sbjct: 741  FYVASTRAKRFLAFIGQEKNKTSELQNETALNSFMKQLFYAMDIDDIDIAVLNGNDLLMY 800

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQ-------KIPKKLFSPIKNDINEPYILNP 759
            D  I    S    E   L+ +  I ++  +             L  P          LN 
Sbjct: 801  DRNIKICKSYDKSEIGKLKNDNLIAEIPLKPQGNISITAYIDYLSCPKLYYYKYIAALND 860

Query: 760  STIDTKGKTNLESLLS--DNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKL 815
              I+ + K +        D     RG I+H++L+ I          KN I      N   
Sbjct: 861  EYIEEQLKNDDFYEYDALDIDALERGTIVHRILENISILDSNASSPKNGIDGIDVDNGIK 920

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ--ISI 873
                 Y  ++    ++L+  ++       S +E      +    +++ ++G ID+  I  
Sbjct: 921  KYIDNYFKIIKEHRKVLKGKLLK------SLNEYRFRVLL---DENLNLNGVIDRIDIYE 971

Query: 874  SQQNI--FIFEYKTHHHVPQEI-EHIPYTHIAQLSIYEKILKDSYPNKSLV--------C 922
            +   I  +IF+YKT+     +  E +   +  Q+  Y   L      KS+          
Sbjct: 972  NDGEIEAYIFDYKTNKINNDDEIEEVVNHYKPQIHAYSYALNKL---KSISGYTPSLKGA 1028

Query: 923  LLIYVSEPKVFIIP 936
             L  +   K   + 
Sbjct: 1029 FLYLLDVGKYIEVD 1042


>gi|77407976|ref|ZP_00784726.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
 gi|77173434|gb|EAO76553.1| reticulocyte binding protein [Streptococcus agalactiae COH1]
          Length = 1207

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 151/917 (16%), Positives = 309/917 (33%), Gaps = 122/917 (13%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIIN 155
             K+  +  + ++     +K    +L  L L +      +  Y + K +    +F D+   
Sbjct: 329  FKQLHNRIVGLKHLEVIFKYQGESLFLLELLQSFVLDFSEQYLQEKIQENAFEFSDIAHF 388

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               +L++      IR     + + +++DE QD +  Q  ++  L           S+   
Sbjct: 389  AIQILEENHD---IRQIYQDKYHEVMVDEYQDNNHTQERILELL-----------SNGHN 434

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             F VGD KQSIY F  A+P+    + +  Q    +   +  +I L  +FRS +++L   +
Sbjct: 435  RFMVGDIKQSIYRFRQADPQIFNDKYKAYQ----DNPSQGKLIILKENFRSQSEVLDSTN 490

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             VF+   + +        + + ++    Q       +  V   D+  +   +S +  +D 
Sbjct: 491  SVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDIDDSDSQQYDI 550

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             P E      A+ +A  I  +   +          +  +DI +LV  R            
Sbjct: 551  SPAE------AKLVAKEIIRLHKEE---------NVPFQDITLLVSSRTR----NDGILQ 591

Query: 396  LKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
              + Y I  V           + +  ++   R I +  +D + V +L+SP+F F+EDD+ 
Sbjct: 592  TFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLT 651

Query: 455  KICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            +I     +    +           +         SK  + +K        A++ S +D  
Sbjct: 652  RIAIHDVKMAFYHKVKLSYHKEGHHSDLITPELSSKIDYFMKTFQTWRDFAKWHSLYDLI 711

Query: 505  TLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I   +       +     +    L        + E+  +  L   I  +++       
Sbjct: 712  WKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEND 771

Query: 564  AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---- 615
                      N V +MT+H +KGLE   VF+++   +         + +  +        
Sbjct: 772  LADVEVALPQNAVNLMTIHKSKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYV 831

Query: 616  -------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                       +   +            + L+ +T  E  RLLYV MTRA  +L +   +
Sbjct: 832  ADMRHELEEEILPAVKVSMETLPYQLNKRELRLATLSEQMRLLYVAMTRAEKKLYLVGKA 891

Query: 669  NT-------------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            +                    S E     + W   V++++   E    I   +     + 
Sbjct: 892  SQTKWADHYDLVSENNYLPLASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDH 951

Query: 710  IAYEWSTHHPENTPLERE----ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--- 762
                 +   P N   + E    E I   +   +  +++    K  I  P +  PS +   
Sbjct: 952  HIGMVNPSLPFNPDNKAENRQSEDIVHAISVLESVEQINQTYKAAIELPTVRTPSQVKKF 1011

Query: 763  -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                                   K    S          G  +H+L+Q I      K ++
Sbjct: 1012 YEPILDIEGVDVMETITKTSVDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMED 1071

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSVSG--KINCP 858
               +    NA+       +  +  I    +   +   +       + E   +   +    
Sbjct: 1072 IQKALTEVNAETSIKAAIQ--IEKINYFFQENSLGKYIQEEVEHLHREAPFAMLKEDPES 1129

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             +  ++ G ID   + +  I +F+YKT   V      +   +  Q+++Y + LK SY  +
Sbjct: 1130 GEKFVVRGIIDGYLLLENRIILFDYKTDKFV--NPLELKERYQGQMALYAEALKKSYEIE 1187

Query: 919  SLVCLLIYVSEPKVFII 935
             +   LI +   ++ ++
Sbjct: 1188 RIDKYLILLGGKQLEVV 1204


>gi|291523612|emb|CBK81905.1| recombination helicase AddA, Firmicutes type [Coprococcus catus GD/7]
          Length = 1228

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 148/1020 (14%), Positives = 314/1020 (30%), Gaps = 145/1020 (14%)

Query: 26   FQVSDINKYVSLSMET-GNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT--QKFTPQK 82
              +    +  +  +E  G    L   +  ++  Q     E +            K  P+ 
Sbjct: 225  KYLPLFEEARAFCLEPNGVEAYLPVIEDDKKWFQMLGESEDYDGSREILHKIVWKRLPRT 284

Query: 83   NII-TQEINKKSPDLKEKLKKSQDEFIK-----IRDRFNTYKMFKS--TLASLTLAKYLN 134
                  +I +K  ++    K   +           +       +        + L +   
Sbjct: 285  AASVDPKIKEKVKEIHADFKSEIEGLRDGYFVHTFEELKAELTYIRPSVRMLIELTEVFG 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDV---------SAWIRYKIDQEINHILIDEV 185
              +   K    +LDF DL      LL                    ++ +    ++ DE 
Sbjct: 345  QQFMAVKNDRNMLDFSDLEHYMLQLLADFSEDEQGQMQVKPTSAADELSEFYEEVVCDEY 404

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QD++ +Q  ++  L+ +              F VGD KQSIY F  A+    + +     
Sbjct: 405  QDSNQVQELILSLLSRE-------RKGQYNRFMVGDVKQSIYRFRLADAAIFMEKYHHYA 457

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIG 303
                 + +    I+L  +FRS   +L+ V+ +F         G+  D    +    +   
Sbjct: 458  --LGESQKTRQRIDLSQNFRSRESVLSGVNYIFRKIMKKSLGGIDYDDQAALYPGMAFPE 515

Query: 304  QVGT-----VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
              G       +L         ++ + +               S  + A+  A  I  +  
Sbjct: 516  AKGKNIADNTELLFLKGDGETTEPDNESL------------DSVELEAKLAAVRIRELTD 563

Query: 359  TDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +          G  R    KDI++L+R              +     I           
Sbjct: 564  PEYGMDIYDGALGDYRKAGYKDIVILLRTVTGWA---EKFVDVLASENIPSTAEMSAGFF 620

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
            D L I+ ++     + +   D+    +L SP+   S +++  +   +H   +++      
Sbjct: 621  DTLEIRTMLQFLAIVDNPGQDIPLAAVLCSPIAGISSEEMA-LIRSKHSEGSLFGACMAC 679

Query: 474  ANCGI--SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLD 530
            +      +K +  +   H++   + +   H+    I           +  G E     LD
Sbjct: 680  SEETPGAAKLKKFLAMFHDIRRASVYLELHELIRYIYDRTGYYDYVQALPGGERRKANLD 739

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585
                  +     SYSSL + +  +EQ                +   VRIM++H +KGLE 
Sbjct: 740  LLRERAVAYAAGSYSSLFDFMRYIEQLKKNQIDFGEAVMPENDKGRVRIMSIHKSKGLEY 799

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            P+V L   G +      I K+ +               + K  +     +   L   T  
Sbjct: 800  PIVILAGLGKKFNFQDSISKLVMHAKSGIGLDAVNLQTRKKMTSAYKKFIAARLNLETLA 859

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKK---------------------SNQRTWYDM 684
            E  R+LYV MTRA ++LI+    +  N  K                     ++ R++ D 
Sbjct: 860  EEQRILYVAMTRAKEKLIMTGMESLKNTDKKLEIWQRNSGILGEVFPDWMLTSARSYLDW 919

Query: 685  VYDS--------------------------------FHNDERVKKIKLTNSINKDEWIAY 712
            +  +                                +  +E +++      +++ +    
Sbjct: 920  IMPAVMNGEAENVVTFRMVDIRALAGREVGRVIDKKWQKEELLQRKHTLPDVSETDVSKR 979

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
             +     +           +    +     + + ++        L     +T+       
Sbjct: 980  LFGEEAWQYPQKALLSVKGKYSVSELKKYAMEAIMEAAPAPGMALAEKQSETEEALPDFM 1039

Query: 773  LLSDNQ--------TFNRGLIIHKLLQVIFTL--PEHKRKNFITSYCTK--NAKLWPAKE 820
               +             RG   H+ L++I     P+ + + ++ S      +A     ++
Sbjct: 1040 KDKEADETHEVSNVGAFRGTAYHRALELIDFAGRPDERDEAWLRSQLNAMTSAGRLSGEQ 1099

Query: 821  YKNL-LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP------------KKDIIISGR 867
             +++ +  I  ++ + +       D   E+    +                ++ ++I G 
Sbjct: 1100 RQSIRIRDIADMVFSNLGLRMAEADRRHELYREAQFVMGVPVSALYPEVDSEETVLIQGI 1159

Query: 868  IDQISISQQNIFIFEYKTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            ID        + + +YKT H   Q+    +   +  QL  Y++ L+     K +   LIY
Sbjct: 1160 IDAYFEENGELILLDYKTDHVSKQDGADILKKRYKRQLDDYQQALEQML-QKKVRQKLIY 1218


>gi|288905008|ref|YP_003430230.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus
            gallolyticus UCN34]
 gi|288731734|emb|CBI13295.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus
            gallolyticus UCN34]
          Length = 1210

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 146/966 (15%), Positives = 316/966 (32%), Gaps = 135/966 (13%)

Query: 64   ERFSLLSSFFLT---QKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRF 114
            E+    S  F T   +    +      ++    P +          K  Q     ++   
Sbjct: 284  EQLREWSQHFETLYGRDGLGRLATDVAKLLPAGPAVTVAGTKYPVFKPLQGRLTGLKHLE 343

Query: 115  NTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
              +K    +L  L       +  +  Y +AK +    +F D+      +L++    A IR
Sbjct: 344  TIFKYQPESLPLLELLQAFMQDFSEQYLQAKIQENTFEFSDITHFAIQILEEN---ADIR 400

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                 + + +++DE QD +  Q  ++  L           S+    F VGD KQSIY F 
Sbjct: 401  ELYQNKYHEVMVDEYQDNNHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFR 449

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
             A+P+   ++ +  Q+       +  +I L  +FRS +++L   + +F+   +       
Sbjct: 450  QADPQIFNQKFKDFQE----HPDRGKLILLKENFRSQSEVLDATNSIFTHLMDEAVGEIL 505

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
               T +  +    Q       E              ++ +       +        + +A
Sbjct: 506  YDDTHQLVAGSPAQK------ESHPENKTQVLIYDIDNNSDLPSDAEEGQINPNEVKLVA 559

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDR 409
              I  +   +          +  +DI +LV  R                Y I  V     
Sbjct: 560  KEIIRLHNEEH---------VAFEDITLLVSSRT----RNDGILQTFEHYGIPLVTDGGE 606

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
                  + +  ++   R + +  +D + V +++SP+F+F+ED++ ++  Q  E +     
Sbjct: 607  QNYLKSVEVMVMLDTLRALDNPLNDYALVALMRSPMFSFNEDELARLALQTTEDDHRANL 666

Query: 470  IQKFANCGISK--------------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
             QK  +    K                  +         A++ + +D    I   +    
Sbjct: 667  YQKLEHALAGKGSHNELMTITLHVKLADFMACFAAWREFAKWHALYDLIWKIYNDRFYYD 726

Query: 516  QFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN----HN 570
               +     +    L          E+  +  L   I  +++   +             N
Sbjct: 727  YVGNLPRAEQRQANLYALALRANNFERTGFKGLSRFIRMIDKVLESENDLADVEVALPKN 786

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIP 619
             V +MT+H +KGLE   VF+++   +      +  + +                      
Sbjct: 787  AVNLMTIHKSKGLEFKYVFILNIDKKFSIQDLMSPLILSRQNGAGIKYLADMKEELETDV 846

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN------- 672
                +            + L+ +T  E  RL YV MTRA  +L +   +++         
Sbjct: 847  FPTVKVIMDTLPYQLNKRELRLATLSEQMRLFYVAMTRAEKKLYLVGKASSEKLVDKYSG 906

Query: 673  ---------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS-------T 716
                      ++ N  T+ D V   +    +       + +  ++    +          
Sbjct: 907  KSENNHLPVAERENFMTFQDWVLAIYEAYSKGTLPFAVDFVTDEDLTDDKIGKIEVTSVI 966

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------------- 762
               + T   + E I   +D  +  +KL +     IN P +  PS +              
Sbjct: 967  TPDDLTDNRQSENITDALDRLEAVEKLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVD 1026

Query: 763  --------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                        +    S  +  +    G  +H+L+Q I    +    +   +    +A+
Sbjct: 1027 VMTKAYQAQPTFELPDFSKKAKIEATAIGSAMHELMQRIPLSKQVTIDDITVALAQVSAE 1086

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRID 869
                 + +  L ++    EN  +   +   +   Y E   +   +    K+  ++ G +D
Sbjct: 1087 --NEVKARIRLENVLAFFENSELGQLIQQHTDKIYREAPFAMLKEDPDSKEKFVVRGIVD 1144

Query: 870  QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
               +    I +F+YKT  +  +    I   +  Q+++Y + L  SY  K++   L+ +  
Sbjct: 1145 GYLVLDDRIVLFDYKTDKY--KNSVEIKERYQGQMALYAEALSKSYDRKNVDKYLVLLGG 1202

Query: 930  PKVFII 935
             ++ ++
Sbjct: 1203 EQLEVV 1208


>gi|261418926|ref|YP_003252608.1| recombination helicase AddA [Geobacillus sp. Y412MC61]
 gi|319765743|ref|YP_004131244.1| recombination helicase AddA [Geobacillus sp. Y412MC52]
 gi|261375383|gb|ACX78126.1| recombination helicase AddA [Geobacillus sp. Y412MC61]
 gi|317110609|gb|ADU93101.1| recombination helicase AddA [Geobacillus sp. Y412MC52]
          Length = 1242

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 150/1040 (14%), Positives = 328/1040 (31%), Gaps = 144/1040 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            I +            I + + L+ E G P          L++   L +   +   +    
Sbjct: 226  IAQHAAMELAAAKRLIRRALELAEEPGGPRPYAARLREDLERIAEL-EVHLSGTWDGLHH 284

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS- 122
             L +    +    +     + +  ++  L+++    ++  +D    +        M +  
Sbjct: 285  ALKALSFGRLPACRGKDYDERLIDEAKSLRDQAKKKVEALRDNVFSLDPSVWLRHMREMK 344

Query: 123  --TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD------VSAWIRYKID 174
                    L +     ++ AK++  ++DF DL      +L++RD        +    +  
Sbjct: 345  PIVETIANLVRRFAVMFQAAKREKGIVDFSDLEHYCLHILRRRDPETGESQPSSAALEYQ 404

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             + + +L+DE QDT+L+Q  +++ +       K        LF VGD KQSIY F  AEP
Sbjct: 405  AQFDEVLVDEYQDTNLVQEAILQLV-------KKGSERTGNLFMVGDVKQSIYRFRLAEP 457

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292
               L + +         G K   I+L  +FRS  ++L   + +F+         +  D  
Sbjct: 458  MLFLDKYKRFTADGEEGGMK---IDLASNFRSRREVLDGTNFLFAQLMGETVGEMVYDEA 514

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              +++ +                +  +     +Q +     +   +  +A + AR +A  
Sbjct: 515  AQLKYGADYPEG---------EDAAPEVMIINRQRAAEEDEEEAAEWEAAELEARLMAKK 565

Query: 353  ISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I  ++       +   G+ R    +DI++LVR   + P +    +       I    +  
Sbjct: 566  IKEIVSAPFYVYDRSSGQPRRAMYRDIVILVRSMTNAPQMIEQLQA----QGIPAAADLS 621

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE- 468
                    I  +++L + I +   D+    +L+SPLF+F E+++  I     +       
Sbjct: 622  SGYFQATEISIMLSLLKVIDNPHQDIPLAAVLRSPLFHFDENELAMIRLADPKGTFYEAL 681

Query: 469  -------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520
                      K       K    ++ +     +A+  S  D    +    +      +  
Sbjct: 682  CSFRQKPAETKEEANAQRKAAAFLERLEGWRTMARRRSLADLIWQLYRDTQFYDFVGALP 741

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575
             G +    L    +   + E  S+  L   +  +E+           R      + VRIM
Sbjct: 742  GGRQRQANLRALYDRARQYESTSFRGLFRFLRFIERLQERGDDLGAARPLGEQEDVVRIM 801

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H++KGLE P+VFL        +        +   L           +       +  +
Sbjct: 802  TIHSSKGLEFPIVFLAGLARSFHTRDLHHPYLLDKELGFAARFVHPRLRISYPTLPLLAI 861

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KS 676
                +     E  R+LYV +TRA ++L +    N + ++                   ++
Sbjct: 862  QTKKRLELLAEEMRILYVALTRAKEKLYLLASVNDAAKEIEKWKSAASERGWLLPDDVRA 921

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL--- 733
            + R++ D +  +         +  T +  +       W         L  +E  ++    
Sbjct: 922  SARSYLDWIGRALIRHRDGGALAGTKAPEEVASHPSVWRVAIVPAADLRGQEAAREEMDG 981

Query: 734  ------------------MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK-------- 767
                               +E K         + +       + S +  +          
Sbjct: 982  GVLLALEQGRPVPVGGGWQEEAKRRLLWRYSYEKETAVRAKQSVSELKEQRALFGEQADE 1041

Query: 768  ------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
                                      +G  +H +++ +         +  +       K 
Sbjct: 1042 WRPRQGTAPVFSRPRFMQEKTLTPAEKGTALHVVMRHLDLQAPLDESSIRSQIVRLVEKE 1101

Query: 816  WPAKEYKNLLL--SITRLLENPMMTTAMSCD-SYSEVSVSGKINCP----------KKDI 862
              + E    +   +I       +     +    + EV  S  +              + +
Sbjct: 1102 LLSAEQAEAVDPAAIAAFFTADLGRRLCAAREVHREVPFSLGLKAAELYGGEGTESGRRV 1161

Query: 863  IISGRIDQISISQQNIFIFEYKTH---HHVPQEIEHIPY----THIAQLSIYEKILKDSY 915
            ++ G ID +   +    + +YKT    H    + E         +  Q+ +Y + ++  +
Sbjct: 1162 LVQGVIDCVFADECGYVMIDYKTDEVVHRFAGQKEEAARFLLGRYGTQMRLYRRAIEQIW 1221

Query: 916  PNKSLVCLLIYVSEPKVFII 935
                  C L       V  +
Sbjct: 1222 RAPVAECYLYSFDGGFVVAV 1241


>gi|319891943|ref|YP_004148818.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius
            HKU10-03]
 gi|317161639|gb|ADV05182.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius
            HKU10-03]
          Length = 1214

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 153/1013 (15%), Positives = 326/1013 (32%), Gaps = 145/1013 (14%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE--- 88
              Y    +    P  +   +  +Q  +    E+     +         P K    +E   
Sbjct: 233  EAYHQFELVGDFPKHIDFIEGHRQFLRRLLSEQFIDKTALATYQLGRIPPKPKAVKEDPM 292

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRF----------NTYKMFKSTLASLTLAKYLNAHYE 138
            ++    + K   ++ ++    ++  F              +        TL + +   + 
Sbjct: 293  LDAAYENFKAHYEQFKNNLNAVKSTFVGRDDETLLEELQHLAPRVKYLATLTEDVIHAFS 352

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             AK+   +LDF D       +L+      + I     +    IL+DE QDT+ +Q  +I 
Sbjct: 353  RAKRARNILDFSDYEHFALQILRDEQGEPSEIAALYRERFEEILVDEYQDTNRVQESIIG 412

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            S+            S   LF VGD KQSIY F  A+P   + + +   +           
Sbjct: 413  SIKR-------GDESNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFNQ---PDQSSGWR 462

Query: 258  IELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            I+L  +FRS  ++L+  + +F    +A    +  D+   + + +        VQ    + 
Sbjct: 463  IDLSQNFRSRKEVLSTTNYLFDHMMDAEVGEIDYDAAAKLYYGAPYDEVDIPVQFNVLM- 521

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQA 373
                              D   + +++   A  IA  +  ++ T  ++    G  R  Q 
Sbjct: 522  -----------------VDKDREMTASEQEAYFIAQQVQTILETQKVYDPKTGAYRPAQY 564

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            KDI++L R   +  LI    +    D  I +  N +    +   I+ +++  R I +   
Sbjct: 565  KDIVILERSYSNVRLIQQAFK----DQDIPLFVNSKQGYFEQTEIRLMLSFLRTIDNPLQ 620

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKY 487
            D+  V +++S ++ F+ED++ KI     +    Y+ IQ + +   +      K +  +  
Sbjct: 621  DIYLVGLMRSVIYQFTEDELAKIRIVSPQDNYFYQSIQHYMDDEAADPAIVAKLKPFLND 680

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSS 546
            +      +Q    +     +       Q F +  G       L    N  +  E +S+  
Sbjct: 681  LARYQDYSQRHPVYQLIDKLFNDHYIIQYFSALVGGRGRRANLHGLFNKAVDFENSSFRG 740

Query: 547  LQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            L + I  ++Q     K     N      N VR+MT+H++KGLE P V           + 
Sbjct: 741  LFQFIRFIDQMIERGKDFGEENVIGPNDNVVRMMTIHSSKGLEFPFVIYSGLTRDFNKND 800

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              K + +                    + I   +    +K    E  RL+YV +TRA +Q
Sbjct: 801  LGKPVVLNQHAGLGLQYYDEARGLFYPSLISMSIDLINQKELISEEMRLMYVALTRAKEQ 860

Query: 662  LIICKHSNTSN------------------------------------------EKKSNQR 679
            L +   S  ++                                          ++     
Sbjct: 861  LYLIGTSKKADALEMMAAATITDEKLAAIDRFNAKNPFQLIYSILSKHQNTNIQRHQRFE 920

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
               + +  +     +++ I   + +  ++ +A                  +   + ++ +
Sbjct: 921  VDVETLDAAVKPRLQLQHIDAGDVLPTEQDLATYQGHAIEALEARLAATPLDDELAQRVM 980

Query: 740  PKKLF-SPIKNDINEPYILNPSTID----------------------TKGKTNLESLLSD 776
             + L+  P +  + +    + S +                          +         
Sbjct: 981  QQLLYVYPYQQAVQQVSKQSVSELKRQLDTEQADTNYERVRQYRLGVATYERPQFLQEQQ 1040

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLE 833
            +     G ++H ++Q +           +  Y        +  A +   + +  I R ++
Sbjct: 1041 HTAAEVGTLMHTVMQHLPFKEAGLTDQALNDYIESLVERSIIRAHDVNVIVIEEIKRFIQ 1100

Query: 834  NPMMTTAM-SCDSYSEVSVSG------KINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
            + +      S + Y+E+                   II G ID +     + +  +YKT 
Sbjct: 1101 SDLYDRIARSDEVYTELPFVVNQHQVEHTPDTTDASIIQGMIDLVFKENDHYYFLDYKTD 1160

Query: 887  HH-------VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
                            +   +  Q+  Y++ L+       +   L +    ++
Sbjct: 1161 ALIRRKGMSDEALERQLKEKYRVQMQYYQRALETIL-KCPVNGYLYFFKYGEL 1212


>gi|311110685|ref|ZP_07712082.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22]
 gi|311065839|gb|EFQ46179.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22]
          Length = 1204

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 159/936 (16%), Positives = 302/936 (32%), Gaps = 116/936 (12%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY---LNAHYEEAKKK 143
            Q+      DL ++LKK    F  + ++     + KS     T+      L   + + K++
Sbjct: 299  QDSQDLKLDLNDQLKKIFASFFVVEEKEQIAVLQKSEKIVKTIVAAEKKLIQKFSQLKRE 358

Query: 144  NCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              ++D+ D+      +L     +A I +    ++ N ILIDE QD + +Q  +I+++   
Sbjct: 359  QNLIDYSDMEQFAFSILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIKAI--- 415

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        TLF VGD KQSIY F  A P   L +     K           I L  
Sbjct: 416  ------KKKGQNTLFMVGDVKQSIYGFRQARPDLFLSKYHTYGKD-----NDSEKIILAD 464

Query: 263  SFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +FRST  +   V+ +F+     N  G+       ++  +S          +   +     
Sbjct: 465  NFRSTKRVTKTVNDLFNPILTTNFGGIDYKKEGQLQFGASY---------YPSDLPTASE 515

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
                 ++   S ++    +       + +   I  +   +    + +   KR ++  DI 
Sbjct: 516  YIFTDKKQTQSAYEDQYGDEMDFSEVQMVIARIKQLKAENFQVWDRRTQLKRPLEYSDIA 575

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            ++ R R D                + +   D         +  +M   R I + + D+  
Sbjct: 576  IITRTRSD----NLQVMQEFAKADLPLFVTDAQNYFQTFELIMIMNYLRLIDNPQQDIPL 631

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI--SKFQHVIKYIHELIHIA 495
            V +++SPLFNF E ++ +I  +              +       K + +++ +  L   A
Sbjct: 632  VAVMRSPLFNFKEPELAQIRVKTPAGNFYTALTSFASVNSSLGKKCKEILQQLETLRSFA 691

Query: 496  QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                  +    I       +       G +    L+         E   +  L + IS +
Sbjct: 692  ATHRISELIWSIYEKTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFI 751

Query: 555  EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            E+                  N V++MT+H +KGLE P+VF++  G Q  +        I 
Sbjct: 752  ERMRKNQKDLAQPLLSDKADNAVKLMTIHASKGLEFPIVFVMGLGHQYQTRDLSGNFTI- 810

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                ++ G+ I     +  + + S      ++   EE  R+LYVG+TRA  +LI+    N
Sbjct: 811  --SQNELGLTIKEKNYRIDSLVKSLADVQKRQQMLEEEARILYVGLTRAQQKLILVASVN 868

Query: 670  TSNEKKSNQRTWYDM-----------------------VYDSFHNDERVKKIKLTNSINK 706
                K+    +  D                        +      D+ ++ +        
Sbjct: 869  EIENKRKKWVSELDQKKDIIPLVKKINAQSPLDFLGPKLEQKHEFDQTIRDMTSALEEQD 928

Query: 707  DEWIAYEWSTHHPENT--------------------------PLEREETIKQLMDEQKIP 740
              +         PE                            P E            +I 
Sbjct: 929  KLYYLKFNLDLEPEKIKDQNEDSQEVNSNVNKVVKELYNFKYPFEDATKTTAYQSVSEIK 988

Query: 741  KKLFSPIKNDINEPYILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
            K    PI  ++    +++ S   +    +T              G  +H +LQ       
Sbjct: 989  KAFNDPIDTELENSRLISSSNRYLQPIDETPTFLEGQKFTGAEIGTAMHLVLQYYNYEGN 1048

Query: 799  HKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS-- 852
              ++N               +    +L                        + E   S  
Sbjct: 1049 KDQENLDQEIDQLVELGKLNSLMVPHLSKEALNWFVMSDFAKEFWKQPDKLHRESQFSSL 1108

Query: 853  -------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHI 901
                      + P   +++ G +D    ++  + +F+YKT        E     I   + 
Sbjct: 1109 VNASELFNDFSDPSAKVLVHGTVDGYFEAKDGLILFDYKTDFVDKTNEEQAIEKIKQKYT 1168

Query: 902  AQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIP 936
             QL +YE+ L +   +K +    LI +   KV  + 
Sbjct: 1169 GQLRLYEQALNEMNNDKKVIGKYLILLDARKVVPVD 1204


>gi|172056768|ref|YP_001813228.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15]
 gi|251764524|sp|B1YKM8|ADDA_EXIS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|171989289|gb|ACB60211.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15]
          Length = 1183

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 164/1014 (16%), Positives = 350/1014 (34%), Gaps = 119/1014 (11%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ----ASQTQCI 62
            +  +ES   + +            IN+Y+ LS         + A  L Q      +    
Sbjct: 203  IDPDESSL-LTRLFELEWERVGPVINRYMELSYRLRQSGYDEMADLLVQDVTPVRRINPE 261

Query: 63   EERFSLLSSFF----LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            ++R++ ++  F      +    + +   ++   +   L   LKK +D F++         
Sbjct: 262  QDRWTTVALAFQAVEFGRWKGIRGDEEMKKFQTERTRLVSDLKKMRDLFVEKDGVDYLED 321

Query: 119  MFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
            +          +TL +  +A Y EAK++  ++DF DL      +L++      +   + +
Sbjct: 322  LRSQLGHVEMIVTLVRSFSAAYLEAKQQRGIVDFSDLEHFALAILEENGEPTDVARLLQE 381

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                +L+DE QDT+ +Q  ++R +++       +  +   LF VGD KQSIY F  AEP 
Sbjct: 382  RFIEVLVDEYQDTNEVQERILRLVSK-------SDEATGNLFMVGDVKQSIYKFRHAEPG 434

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
              L + +  Q+      +  + I+L  +FRS  ++L   + +F    +      D     
Sbjct: 435  LFLNKFKRFQQ-----TEVGTRIDLTKNFRSRLEVLDGTNHIFRQVMDEAVGEIDYDEAA 489

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
              R   +G V + Q+  +++    +  N +                  + A+ IA  I  
Sbjct: 490  YLRLGNLGYVDSTQVDPELLLVDQTDTNKE-----------------ELEAQVIATRIIE 532

Query: 356  MIGTDTIF-----SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            M+  +  +        + R  + +DI++LVR R            +   Y++ V  +   
Sbjct: 533  MVNDENPYLVFDAKQKRFRKCEYRDIVILVRSRG---KRVQALVDVFEQYELPVYADTTG 589

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
                   I+ +M+L + I +   D+ F  +L+SP+F  ++ D+ +I  +  +       I
Sbjct: 590  GYFQATEIQIMMSLLKTIDNPLQDIPFASVLRSPIFGLTDRDLGRIRAKSKDGSFYEAAI 649

Query: 471  QKFANCGISKFQ--HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVID 527
                       +    +  +H     A+  S       +       +       G     
Sbjct: 650  LVAKEQTPLGLRVDEALNQLHHWRTEARGKSLASLIRSLFDQTGYFEYVGCLNGGRSRQA 709

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKG 582
             L+       + E + Y  L   +  +          +  R+   + + VRIMT+H +KG
Sbjct: 710  NLNALYERAHQYEASGYRGLYRFLRLIHRLVERGEDFSEARSLGEDEDVVRIMTIHQSKG 769

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PV  +   G Q      I+ + +  +          + + +S   +   + + + + 
Sbjct: 770  LEFPVTIVSQLGKQFNKQDQIQAIQLHKTYGIALDAIDPVKRLRSGTLLKEVIRREMDRE 829

Query: 643  TQEEYNRLLYVGMTRASDQLIICKH---------SNTSNEKKSNQRTWYDMVYDSFHNDE 693
             + E  R+LYV MTRA ++LI+                           D      + D 
Sbjct: 830  MKAEEMRVLYVAMTRAKEKLILVGAIKGLEDQLIKWQDQPLDELLLPEMDRRNAKTYADW 889

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK--------------- 738
             V  +     +++D            E  P +    + + ++  +               
Sbjct: 890  VVPAVLRNFLLSEDGPRWSFRIIALDEIAPYQELTKMVEQLEHVRVLEKIDHAGDETLNI 949

Query: 739  -IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN------------------QT 779
             I           +        +  + K    LE    ++                    
Sbjct: 950  QIEAAFAYQYPYQVATDTAAKQTVTELKRTEQLERAAFESTHRQSTYYRTPQFLGPTLTG 1009

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM-- 837
              RG ++H  +Q+  +    + +        +      A+  +  +  +T  L +     
Sbjct: 1010 AERGTVLHLAMQLYESGRSFEEQILDWEQAER-ISSLEAQTMREAIPELTTFLASDTGQL 1068

Query: 838  --TTAMSCDSYSEVSVSGKIN---------CPKKDIIISGRIDQISISQQNIFIFEYKTH 886
                 ++ + Y E+  + KI+          P    ++ G +D +        + +YK+ 
Sbjct: 1069 FEQRLLAGEVYRELPFTYKIDSARFRSDWHGPSDQAVMQGIVDCLIRDGDTYILLDYKSD 1128

Query: 887  HHVP-----QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                      + E +   +  QL++Y++ L+     +    L+   +  +V  I
Sbjct: 1129 QVFETTDNQNQAEVLRTRYATQLNLYQEALEAILHIRISRKLIYAFALHEVIEI 1182


>gi|322385777|ref|ZP_08059421.1| exonuclease RexA [Streptococcus cristatus ATCC 51100]
 gi|321270515|gb|EFX53431.1| exonuclease RexA [Streptococcus cristatus ATCC 51100]
          Length = 1223

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 158/991 (15%), Positives = 324/991 (32%), Gaps = 129/991 (13%)

Query: 29   SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88
            + ++    L+ +TG+  +L   Q   + ++T   +       +  + +     K  I Q 
Sbjct: 275  AALDILAELTEQTGSEQLLDLIQRFLELAKTSNHQAF-----TARVGKNADELKKEIAQA 329

Query: 89   INKKSPDLKEKLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
             N+    L E++K+       +     +  +            +  +  Y E K      
Sbjct: 330  YNEARKPLIERIKELDVRLYHLNFMEQHQSEALPLLDLLRDFVRDFSQAYLERKVAENAF 389

Query: 148  DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            +F D+     ++L+       +R     + + +++DE QDT+  Q  ++  L  +     
Sbjct: 390  EFGDISHFAIEILENYPE---VRRFYQDKYHEVMVDEYQDTNHTQERMLELLARE----- 441

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                     F VGD KQSIY F   +P+    + ++ Q        +  +I L  +FRS 
Sbjct: 442  ------NNRFMVGDIKQSIYRFRQVDPQIFNDKFKLYQAD----PSQGKLIILKENFRSH 491

Query: 268  ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             ++L   + VF    + +    D   T    +    +       +     +D   + ++E
Sbjct: 492  IEVLEATNDVFKRLMDEEIGEIDYNETHYLVAGNPAKREPNPANQAEFLLYDGSADSEEE 551

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   S+     A      +   I  +   +          +  KDI +L   R    
Sbjct: 552  DSDQGLPSISAGEVA-----LVIKEIIRLHNQE---------GVDFKDITLLTASRT--- 594

Query: 388  LITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L     + + I +V +D        + +  ++   R I +  +D +   +LKSP+F
Sbjct: 595  -RNDLILAEFDRHHIPIVPDDGETNYLQSVEVMVMLDTLRTINNPLNDYALTALLKSPMF 653

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFAN--------------CGISKFQHVIKYIHELI 492
            +F ED++ ++  Q   T+++    +K  N                  K QH  + +++  
Sbjct: 654  DFDEDELARLALQASSTKSMENLYEKLRNALADQGLGPQLIHGELRKKLQHFQETLNDWR 713

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
              ++  S +D    I   +       +   G +    L          E++S+  L   I
Sbjct: 714  SYSKTHSLYDLIWKIYQDRFYYDMVGALPNGEQRQANLYALSLRANDYEKSSFKGLSRFI 773

Query: 552  SELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            S +++             +A  N V+++T+H +KGLE   VFL++             + 
Sbjct: 774  SMIDRILKNEHDLASVPLAAPKNAVQLVTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAII 833

Query: 608  IMPSLNDD------------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +                           +            + LK ++  E  RLLYV M
Sbjct: 834  LSRQKGIGIKYVADVDLEAQGPHAPKQIRISMETLPYQQNAEELKLASLSEQMRLLYVAM 893

Query: 656  TRASDQLIICKHSNTS-------------------NEKKSNQRTWYDMVYDSFHNDERVK 696
            TRA  +L +      +                     + +N + W   +   F  +    
Sbjct: 894  TRAETKLYLVGKGKQAKLQERKWGTSQNGRLSSSLRSQLTNFQDWLYAIQSVFGKENLAY 953

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTP----LEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            + +        +          P          + E I++ +D  +   +L S  +  I 
Sbjct: 954  QTRFVTDQELTDEQIGLVEQVDPIPVDDLTGNRQSEDIRRALDILENVDRLNSLYQAAIE 1013

Query: 753  EPYILNPSTIDTKGKT------------------------NLESLLSDNQTFNRGLIIHK 788
             P +  PS I    +                                       G  +H+
Sbjct: 1014 LPSVRTPSQIKKFYEPVMDSEGLDIMDAPRSHQTQLTFDLPDFGKKKQVTGAQIGSAVHE 1073

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA--MSCDSY 846
            L+Q I       + +   +           KE    L  I       +       S   +
Sbjct: 1074 LMQRIPLDRPITKTSIRQALAQVQVDAAVKKEID--LAKIEAFFATELGQLIQHQSNHLH 1131

Query: 847  SEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
             E   +   +     +D ++ G +D   +   +I +F+YKT  +   +   +   + AQL
Sbjct: 1132 REAPFAMLKQDPASGQDFVVRGILDGYLLFDDHIVLFDYKTDRY--HDPAELVERYRAQL 1189

Query: 905  SIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             +Y + L  SY    +   LI +   ++ ++
Sbjct: 1190 DLYAEALSRSYGLSQVDKYLILLGGTELQVV 1220


>gi|94994076|ref|YP_602174.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750]
 gi|251764562|sp|Q1J7E4|ADDA_STRPF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|94547584|gb|ABF37630.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750]
          Length = 1222

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 162/1021 (15%), Positives = 325/1021 (31%), Gaps = 131/1021 (12%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERF------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
              F      + L                      K P  K   +K +             
Sbjct: 304  RDFKCLYGKAGLDRLIRDVTGLIPSGNYVTVSKVKYPVFKTLHQKLKQFRHLETILMYQK 363

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              F             +  Y   K +    +F D+      +L++      IR    Q  
Sbjct: 364  DCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSYQQHY 420

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+P+  
Sbjct: 421  HEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQADPQIF 469

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
             ++ R  QK+         +I L  +FRS +++L V + VFS   +      D     +H
Sbjct: 470  NQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLYDEQH 523

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            +        TV   ++         +  ++   +  DS     S   +   +A  I  + 
Sbjct: 524  QLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEIIKLH 578

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHL 416
                       + +  +DI +LV  R        +     N Y I +V +         +
Sbjct: 579  ND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNYLKSV 625

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEYIQK- 472
             +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ IQ+ 
Sbjct: 626  EVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDKIQRA 685

Query: 473  ----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-F 521
                        +  + K    +K +      A+  S +D    I   +       S+  
Sbjct: 686  VIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVASQAK 745

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTV 577
              +    L        + E++ Y  L   I      LE          +A    V +MT+
Sbjct: 746  AEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVNLMTI 805

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSK 626
            H +KGL+ P VF+++   +       K   +                      +   +  
Sbjct: 806  HKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNSVKVS 865

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR------- 679
                      + L+ +T  E  RLLYV MTRA  ++     ++ S  ++           
Sbjct: 866  METLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKLDKLL 925

Query: 680  ------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HPENTP 723
                         W   + D F  ++    ++     +  +       T       +   
Sbjct: 926  PLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPDDLKD 985

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT--------------- 768
              + ETI + +D  +   +L +  +  I+ P +  PS +    +                
Sbjct: 986  NRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIEKSSR 1045

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S  +  +  + G  +H+L+QV+       ++  + +   +        + 
Sbjct: 1046 SLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNEEVKT 1103

Query: 822  KNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
               L  I     +  +           Y E   +        +++ ++ G ID   +   
Sbjct: 1104 ALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYFLFDD 1163

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP--KVFI 934
            +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     ++  
Sbjct: 1164 HIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKPEIVE 1221

Query: 935  I 935
            +
Sbjct: 1222 V 1222


>gi|124486140|ref|YP_001030756.1| hypothetical protein Mlab_1322 [Methanocorpusculum labreanum Z]
 gi|124363681|gb|ABN07489.1| UvrD/REP helicase [Methanocorpusculum labreanum Z]
          Length = 1057

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 162/951 (17%), Positives = 299/951 (31%), Gaps = 115/951 (12%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            +     Y+D         + + +  +L+ E                       E ++   
Sbjct: 201  DEEITAYRDDLAGDELVNALMAELRALAPERKGELFQAGPAAFAAFCDANGPAEMYAA-G 259

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
                       K  + +   ++  + +E  K+      +   R      F+   A   +A
Sbjct: 260  KLLAGINTNAYKAPLPKGGLERFKEKREVFKEFPTHPDESDPRTRL--TFEILAALGRVA 317

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              ++      K++  VLDF+DLI  T DL++       ++  ++    +IL+DEVQD   
Sbjct: 318  SAVSERTVREKQQRGVLDFDDLIQKTRDLIEND----AVQKTLNARYRYILVDEVQDNDP 373

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +  ++IR L  D             LF VGD KQSIY F GA+       + +       
Sbjct: 374  VLTDIIRILCGD-------PKENNRLFIVGDAKQSIYLFRGADVSGFNAFQTVFAND--- 423

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                   +EL  SFR+  +I+ +V+ VFS    A                R G  G+V L
Sbjct: 424  ------PVELDTSFRTVPEIIRLVNHVFSSVF-ADPKEIWEAGYGELTPHRAGHSGSVTL 476

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI---FSNGK 367
                  +  ++                   S    AR +A  I + +    +     +G 
Sbjct: 477  IRLPTGETKAE-------------------SMRREARTLASWIFDTVSRKKLSVYDKDGT 517

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R  +  DI VL+  R          R     Y +       +       + D   L + 
Sbjct: 518  CRPARFGDIAVLIEARTHM----DKLRHALESYGVPYTEEKGYSFYQKQEVFDFTNLLKA 573

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            I+  E+D+    +LKSP F  S+ ++ +          ++           SK    +  
Sbjct: 574  IVYPEEDIPLYGVLKSPYFGISDAELCRAAAGSGRPL-IWRLRNYATANPDSKIGKAVGD 632

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +              F + ++        +    FG E    L++ +        N   S
Sbjct: 633  LARWHAEIGTEPFVPFLSRLIAESGIAAVYGGLPFGREATANLEKLVAIARSRSMNRPFS 692

Query: 547  LQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            + E +  L+                   + V+I+TVH +KGLE P++ L   G+      
Sbjct: 693  VYEYLGILDTCMEEEFDEREGMVPSEEDDRVKILTVHASKGLEYPILALCFAGTG---DG 749

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                  +  +            + +  + ++  L   +K     E  RL YV MTRA D 
Sbjct: 750  LKVSAPVFDAELGVGIPVRLAGEGEGLSFVIECLKPEMKAKLLAERKRLFYVAMTRARDH 809

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            L+I         + ++  + YD           +    +    +                
Sbjct: 810  LVISGTDGKKGPETNSFLSMYDAGISGCPYLPELITDCVAEPGDLCRIRPKVPDGWTDTP 869

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
             P + EE  + L                         PS  +                  
Sbjct: 870  LPTKEEEAAQSLTA-----------------AVRNRTPSAAEEA-------------AML 899

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            RG  +H++ +        KR               P    +         L +P+M    
Sbjct: 900  RGTALHEVFEGKPADAAVKR------------YGLPPAAAEEFAAKYAAFLASPLMQN-- 945

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTH 900
            +  S  E  V+       +   ++G ID++   +     I +YKT      E+E     +
Sbjct: 946  AAKSICEQEVAFSF----EGTPLNGVIDRLVQYEDGSWMIIDYKTGRPSKMELE----RY 997

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
             +QL++Y  +       K     L    + +V     ++  +A   ++ K+
Sbjct: 998  ESQLAVY-FLWAKRLFGKDPEVCLYLSDKNEVVSFTMDE-ERAMGLVAEKM 1046


>gi|326790761|ref|YP_004308582.1| recombination helicase AddA [Clostridium lentocellum DSM 5427]
 gi|326541525|gb|ADZ83384.1| recombination helicase AddA [Clostridium lentocellum DSM 5427]
          Length = 1251

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 150/952 (15%), Positives = 304/952 (31%), Gaps = 129/952 (13%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +       ++ + L+                ++       + L +     Y+  K+   V
Sbjct: 306  KAYRDLGKEVIKGLQDDLAFIEDPLLMAQLPRLGDLMATLVKLIETFEERYQLEKQNAGV 365

Query: 147  LDFEDLIINTNDLLKKRDVSA----------WIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            +D+ DL      LL +   +            +  ++      I IDE QD++ +Q  ++
Sbjct: 366  VDYNDLEHFCLQLLVEPIFNEAGELVEVSYTDVAKELSSFYKEIYIDEYQDSNTVQETLL 425

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            +++       +       T F VGD KQSIY F  A P     +    +K    +  K +
Sbjct: 426  KAVA------EANKEEGPTRFMVGDMKQSIYRFRLANPLIFAEKYGSWEKHQVTSSTKGN 479

Query: 257  --IIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               I+L  +FRS  +IL  V+ +F    + +   L  D    ++  +             
Sbjct: 480  NVCIDLSQNFRSRDNILQGVNDLFQQVMSVRVGELEYDEYAELKVGNHYEEGNPESLAEG 539

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN------G 366
             +    +      +E   +    L    +    A  +A  +  ++  +   ++      G
Sbjct: 540  ALSEAIEVHILETKEPENTEETGLEDLKNVECEAMLVANLVDQLLKGEGNPTHIFDKALG 599

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R ++AKDI++L+R  K+   I            I    +      D L I+ +M+L +
Sbjct: 600  AYRKVEAKDIVILLRATKEKAGI---FENALMQKGIGAYADIGGNFFDALEIQTMMSLLK 656

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF-ANCGISKFQHVI 485
             I +   D+  + +L+SP+   S D++  I             ++              +
Sbjct: 657  IIDNPLQDIPLITVLRSPIVGVSLDELVYIRKAAETGCFYEALLKYLKTCQDNPLLNRFM 716

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSY 544
              ++   +++   S  +    +       +       G +    L+ F  +    E N  
Sbjct: 717  SMLNNYRNMSSELSLEELLARLYVETGYYRYVAMLPTGAKKKANLELFKKYAEAYENNQN 776

Query: 545  SSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              L   I  L+Q   T            N N V+IM++H +KGLE  VVFL DTG +  +
Sbjct: 777  GKLFGFIQYLDQLAQTPDGLAEAKLVGENENLVQIMSIHKSKGLEFSVVFLCDTGKRFNN 836

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +  +K + +   L   P         K        +   +      E  R+LYV +TRA 
Sbjct: 837  NDMMKPVLLHNELGLAPDYLDTSKYVKYPTIPKMAIKNQILSENISEEMRVLYVALTRAK 896

Query: 660  DQLIICKHSNT----------------------SNEKKSNQRTWYDMVYDSFHNDERVKK 697
            ++L +    +                         ++  +   W  +   +  + E ++ 
Sbjct: 897  EKLFVTGTLSDVQDAAYKWSLYASREETAILPLGVKRGGSYLNWIGLSLYAHSDLEDLRL 956

Query: 698  IKLTNS----INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL---------- 743
            +           + +W    WS     N    RE+ I++  D  +               
Sbjct: 957  LTHEAPPYLFEGRGKWQLRVWSKEELGNLQTSREQGIEEKRDLLEEWDTEKIYGPYKEII 1016

Query: 744  ------FSPIKNDINEPYILNPSTI----------------------DTKGKTNLESLLS 775
                      +  +  P  ++ S I                      +     +      
Sbjct: 1017 FNRLNGEYTHEEAVLLPTKVSVSEIKRDAMGQLIDDEVYEVNLYPVEEEVPVPSFIKGQE 1076

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
            + +   RG +IH + + +  L   +                       L   +  ++ + 
Sbjct: 1077 ELKGAKRGTLIHSVFEHLDFLKFIEVAAIEEELMHLVNSH-------QLSAEVLEVVSSK 1129

Query: 836  MMTTAMSCDS----YSEVSVSG--------------KINCPKKDIIISGRIDQISISQQN 877
             +    + +          V                +     ++I+I G ID   I ++ 
Sbjct: 1130 RLAEMANSEVVKKMRRAQYVEKEKAFIYLANAKLVNEAYPEGEEILIQGVIDSFYIDEEG 1189

Query: 878  IFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            I + +YKT +   ++ E     I   +I QL +Y   L D          + 
Sbjct: 1190 ITLIDYKTDYVDKEQKELSIQRIKEKYIKQLELYSLALSDITKLTVAHKYIY 1241


>gi|325977976|ref|YP_004287692.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus
            subsp. gallolyticus ATCC BAA-2069]
 gi|325177904|emb|CBZ47948.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus
            subsp. gallolyticus ATCC BAA-2069]
          Length = 1168

 Score =  346 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 150/1001 (14%), Positives = 326/1001 (32%), Gaps = 137/1001 (13%)

Query: 26   FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
              V+D+  Y   +   G PT     + L      +   + F  L      +    +    
Sbjct: 212  QDVTDLEDYKQKT-AKGTPTA-NYKKHLNIIEHLREWTQHFETLYG----RDGLGRLATD 265

Query: 86   TQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTYKMFKSTLASL----TLAKYLNA 135
              ++    P +          K  Q     ++     +K    +L  L       +  + 
Sbjct: 266  VAKLLPAGPAVTVAGTKYPVFKTLQGRLTGLKHLETIFKYQPESLPLLELLQAFMQDFSE 325

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y +AK +    +F D+      +L++    A IR     + + +++DE QD +  Q  +
Sbjct: 326  QYLQAKIQENAFEFSDIAHFAIQILEEN---ADIRELYQNKYHEVMVDEYQDNNHTQERM 382

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +  L           S+    F VGD KQSIY F  A+P+   ++ +  Q+       + 
Sbjct: 383  LELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQE----HPDRG 427

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             +I L  +FRS +++L   + +F+   +          T +  +   G     +      
Sbjct: 428  KLILLKENFRSQSEVLDATNSIFTHLMDEAVGEILYDDTHQLVA---GSPAQKESHP--E 482

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
            ++         ++ +       +        + +A  I  +   +          +  +D
Sbjct: 483  NKTQVLIYDIVDNNSDLPSDAEEGQINPNEVKLVAKEIIRLHNEEH---------VTFED 533

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            I +LV  R                Y I  V           + +  ++   R + +  +D
Sbjct: 534  ITLLVSSRTR----NDGILQTFEHYGIPLVTDGGEQNYLKSVEVMVMLDTLRALDNPLND 589

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--------------ISK 480
             + V +++SP+F+F+ED++ ++  Q  E +      QK  +                  K
Sbjct: 590  YALVALMRSPMFSFNEDELARLALQTTEDDHRANLYQKLEHALAGKGSHNELMTITLHDK 649

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539
                +         A++ + +D    I   +       +     +    L          
Sbjct: 650  LADFMTCFAAWREFAKWHALYDLIWKIYNDRFYYDYVGNLPRAEQRQANLYALALRANNF 709

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGS 595
            E+  +  L   I  +++   +             N V +MT+H +KGLE   VF+++   
Sbjct: 710  ERTGFKGLSRFIRMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLEFKYVFILNIDK 769

Query: 596  QVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            +      +  + +                          +            + L+ +T 
Sbjct: 770  KFSIQDLMSPLILSRQNGAGIKYLADMKEELETDVFPTVKVSMDTLPYQLNKRELRLATL 829

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDS 688
             E  RL YV MTRA  +L +   +++                   ++ N  T+ D V   
Sbjct: 830  SEQMRLFYVAMTRAEKKLYLVGKASSEKLVDKYSGKSENNHLPVAERENFMTFQDWVLAI 889

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWS-------THHPENTPLEREETIKQLMDEQKIPK 741
            +    +       + +  ++    +             + T   + E I   +D  +  +
Sbjct: 890  YEAYSKDTLPFAVDFVTDEDLTDDKIGKIEVTSVITPDDLTDNRQSENITDALDRLEAVE 949

Query: 742  KLFSPIKNDINEPYILNPSTI----------------------DTKGKTNLESLLSDNQT 779
            KL +     IN P +  PS +                          +    S  +  + 
Sbjct: 950  KLNAKYHAAINLPSLRTPSQVKKLYEPVMDTDGVDVMTKAYQAQPTFELPDFSKKAKIEA 1009

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
               G  +H+L+Q I    +    +   +    +A+     + +  L ++    EN  +  
Sbjct: 1010 TAIGSAMHELMQRIPLSKQVTIADITAALAQVSAE--DEVKARIRLENVLAFFENSELGQ 1067

Query: 840  AMSCD---SYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
             +       Y E   +   +    K+  ++ G +D   +    I +F+YKT  +  +   
Sbjct: 1068 LIQQHTDKVYREAPFAMLKEDPDSKEKFVVRGIVDGYLVLDDRIVLFDYKTDKY--KNSV 1125

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I   +  Q+++Y + L  SY  K +   L+ +   ++ ++
Sbjct: 1126 EIKERYQGQMALYAEALSKSYDRKDVDKYLVLLGGEQLEVV 1166


>gi|330832698|ref|YP_004401523.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3]
 gi|329306921|gb|AEB81337.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3]
          Length = 1217

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 160/984 (16%), Positives = 320/984 (32%), Gaps = 129/984 (13%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----- 94
                  + +    L     +   ++    +    L    +  K +      K        
Sbjct: 270  AKYFANVEEVLDLLTG-LDSLDQKDLMERVEKVLLINDQSRGKGLTNANRPKDEHLIAFK 328

Query: 95   --------DLKEKLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
                     +   L+    E  ++   +    +     +         +  Y + K K  
Sbjct: 329  EEYNAGKSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEA 388

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
              +F D+      +L++      IR    ++ + +++DE QD +  Q  ++  L      
Sbjct: 389  AFEFGDIGHFAIRILEEN---VDIRQFFQEKYHEVMVDEYQDNNHSQERMLDLL------ 439

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                 S+    F VGD KQSIY F  A+P     +  + Q       Q   +I L  +FR
Sbjct: 440  -----SNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQAD----SQAGKLILLKENFR 490

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            S  ++L   + +F+   + Q        T    +   GQ       E     +D Q    
Sbjct: 491  SQIEVLEATNAIFTRLMDRQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQ---- 546

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
             +S  S  D+  +    +     +A  I  +   +             KDI +LV+KR  
Sbjct: 547  -DSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEE---------GADFKDITLLVQKRTH 596

Query: 386  TPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                  L   +   + I +V +         L +  ++   R I +  +D + V +LKSP
Sbjct: 597  ----NDLIISIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLKSP 652

Query: 445  LFNFSEDDIFKICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHI 494
            +F F ED++ +I  Q                  ++ +  +     K +  +  +      
Sbjct: 653  MFRFDEDELTRISLQAGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAF 712

Query: 495  AQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
            A+  S +D    I   K       +   G++    L        + E+  Y  L   I  
Sbjct: 713  AKMHSIYDLIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIVM 772

Query: 554  LEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVF----------S 599
            +++     K           N V++MT+H +KGLE   VFL++   +            S
Sbjct: 773  IDRALANDKDLADVEEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVIIS 832

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             K+   +  +  + D    P+   +         D ++ LK +   E  RLLYV +TRA 
Sbjct: 833  RKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQDNLQELKIANLSEQMRLLYVALTRAE 892

Query: 660  DQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             +L +    N                     + +  T+ D +                  
Sbjct: 893  KKLYLVGKGNADKLAKKYDGKKADGVLAQSTRESVATFQDWILAIDEAFSGEDLHFKKVF 952

Query: 704  INKDEWIAYEWST-------HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
            +  ++    +                 + + E I Q +D+    ++L    K  I  P +
Sbjct: 953  VTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKVAIELPSL 1012

Query: 757  LNPSTIDTKGKT---------------------NLESLLSDNQTFNRGLIIHKLLQVIFT 795
              PS I    +                         S          G  +H+L+Q +  
Sbjct: 1013 RTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLDL 1072

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVS- 852
                       +    +A+     +    +  I    +  +    ++     + E   + 
Sbjct: 1073 SWLVTEDTVREALEAVHAEQAIKDKIN--VQMILDFFDTDLGREILANTDKLHREAPFAS 1130

Query: 853  -GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
                +  +++ ++ G ID   +   +I +F+YKT  +   +   +   + AQ+ +Y + L
Sbjct: 1131 LQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKY--DQPSQLSQRYQAQMQLYAEAL 1188

Query: 912  KDSYPNKSLVCLLIYVSEPKVFII 935
            K +Y    + C LI +   ++ ++
Sbjct: 1189 KKAYKIDRVDCHLILLGGERIEVV 1212


>gi|71910408|ref|YP_281958.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005]
 gi|71853190|gb|AAZ51213.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005]
          Length = 1222

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 160/1025 (15%), Positives = 326/1025 (31%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +       +     D+          K    +  + R      
Sbjct: 304  RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360  MYQKDCFSLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 466  PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 575  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 682  IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +     V 
Sbjct: 742  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVATPKQAVN 801

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 802  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  ++       
Sbjct: 862  VKVSMETLPYQLNKQELRLATLSEEMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 922  GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +            
Sbjct: 982  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                          S  +  +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217

Query: 931  KVFII 935
            ++  +
Sbjct: 1218 EIVEV 1222


>gi|19745861|ref|NP_606997.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
            MGAS8232]
 gi|81632923|sp|Q8P1J2|ADDA_STRP8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|19748011|gb|AAL97496.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
            MGAS8232]
          Length = 1222

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 161/1025 (15%), Positives = 327/1025 (31%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +       +     D+          K    +  + R      
Sbjct: 304  RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360  MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D+  
Sbjct: 466  PQIFNQKFRDYQKKTEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDALY 519

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 575  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 682  IQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +A    V 
Sbjct: 742  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 802  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  +        
Sbjct: 862  VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 921

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 922  GKLLSLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +            
Sbjct: 982  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKVTYEPLLEPIGVDIIE 1041

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                          S  +  +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217

Query: 931  KVFII 935
            ++  +
Sbjct: 1218 EIVEV 1222


>gi|94988280|ref|YP_596381.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429]
 gi|251764560|sp|Q1JMH5|ADDA_STRPC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|94541788|gb|ABF31837.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429]
          Length = 1222

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 163/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +       +     D+          K    +  + R      
Sbjct: 304  RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360  MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDITHFAIKILEEN---TDIRQSY 416

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 466  PQIFNQKFRDYQKKTEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 575  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 682  IQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +A    V 
Sbjct: 742  SQAKAEQAQANLYALALRANQFEKSGYKGLYCFIKMIDKVLETQNDLADVEVAAPKQAVN 801

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 802  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  +        
Sbjct: 862  VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 921

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 922  GKLLPLALREQLLTFQDWLLAIADVFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-- 777
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +  LE +  D   
Sbjct: 982  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIE 1041

Query: 778  --------------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                                +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1042 KSSRSLSDFTLPHFSKKVKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--REIDSNE 1099

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1159

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217

Query: 931  KVFII 935
            ++  +
Sbjct: 1218 EIVEV 1222


>gi|297531123|ref|YP_003672398.1| recombination helicase AddA [Geobacillus sp. C56-T3]
 gi|297254375|gb|ADI27821.1| recombination helicase AddA [Geobacillus sp. C56-T3]
          Length = 1242

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 155/1040 (14%), Positives = 332/1040 (31%), Gaps = 144/1040 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            I +            I + + L+ E G P                L+    +    E   
Sbjct: 226  IAQHAVMELTAAKRLIRRALELAEEPGGPRPYAERLREDRDMIADLETRL-SGPWAELHR 284

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS- 122
             L +    +    +     + +  ++  L+++    ++  +D    +        M +  
Sbjct: 285  ALKALSFGRLPACRGKDYDERLIDEAKSLRDQAKKKVEALRDNVFSLDPSVWLRHMREMK 344

Query: 123  --TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD------VSAWIRYKID 174
                    L +     ++ AK++  ++DF DL      +L++RD        +    +  
Sbjct: 345  PIVETIANLVRRFAVMFQAAKREKGIVDFSDLEHYCLHILRRRDPETSEWQPSPAALEYQ 404

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             + + +L+DE QDT+L+Q  +++ +       K        LF VGD KQSIY F  AEP
Sbjct: 405  AQFDEVLVDEYQDTNLVQEAILQLV-------KKGSERTGNLFMVGDVKQSIYRFRLAEP 457

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292
               L + +         G K   I+L  +FRS  ++L   + +F+         +  D  
Sbjct: 458  MLFLDKYKRFTADGEEGGMK---IDLASNFRSRREVLDGTNFLFAQLMGETVGEMVYDEA 514

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              +++ +                +  +     +Q +     +   +  +A + AR +A  
Sbjct: 515  AQLKYGADYPEG---------EDAAPEVMIINRQRAAEEDEEEAAEWEAAELEARLMAKK 565

Query: 353  ISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I  ++       +   G+ R    +DI++LVR   + P +    +       I    +  
Sbjct: 566  IKEIVSAPFYVYDRSSGQPRRAMYRDIVILVRSMTNAPQMIEQLQA----QGIPAAADLS 621

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE- 468
                    I  +++L + I +   D+    +L+SPLF F E+++  I     +       
Sbjct: 622  SGYFQATEISIMLSLLKVIDNPHQDIPLAAVLRSPLFRFDENELAMIRLADPKGTFYEAL 681

Query: 469  -------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520
                      K       K    ++ +     +A+  S  D    +    +      +  
Sbjct: 682  CSFRQKPAETKEEANAQRKAAAFLERLEGWRTMARRRSLADLIWQLYRDTQFYDFVGALP 741

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575
             G +    L    +   + E  S+  L   +  +E+           R      + VRIM
Sbjct: 742  GGRQRQANLRALYDRARQYESTSFRGLFRFLRFIERLQERGDDLGAARPLGEQEDVVRIM 801

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H++KGLE P+VFL        +        +   L           +       +  +
Sbjct: 802  TIHSSKGLEFPIVFLAGLARPFHTRDLHHPYLLDKELGFATRFVHPRLRISYPTLPLLAI 861

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KS 676
                +     E  R+LYV +TRA ++L +    N + ++                   ++
Sbjct: 862  QTKKRLELLAEEMRILYVALTRAKEKLYLLASVNDAAKEIEKWKSAASERGWLLPDDVRA 921

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD- 735
            + R++ D +  +         +  T +  +       W         L  EE  ++ MD 
Sbjct: 922  SARSYLDWIGRALIRHRDGGALAGTKAPEEVASHPSVWRVAIVPAADLRGEEAAREEMDD 981

Query: 736  ------------------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                              ++++ ++L      +         S  + K +  L    +D 
Sbjct: 982  GVLLALEQGRPVPVGGGWQKEVKRRLLWRYSYEKETAVRAKQSVSELKEQRALFGEQADE 1041

Query: 778  ----------------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
                                      +G  +H +++ +         +  +       K 
Sbjct: 1042 WRPRQGTAPVFSRPRFMQEKTLTPAEKGTALHVVMRHLDLQAPLDESSIRSQIVRLVEKE 1101

Query: 816  WPAKEYKNLLL--SITRLLENPMMTTAMSCD-SYSEVSVSGKINCP----------KKDI 862
              + E    +   +I       +     +    + EV  S  +              + +
Sbjct: 1102 LLSAEQAEAVDPAAIAAFFTADLGRRLCAAREVHREVPFSLGLKAAELYGGEGTESGRRV 1161

Query: 863  IISGRIDQISISQQNIFIFEYKTH---HHVPQEIEHIPY----THIAQLSIYEKILKDSY 915
            ++ G ID +   +    + +YKT    H    + E         +  Q+ +Y + ++  +
Sbjct: 1162 LVQGVIDCVFADECGYVMIDYKTDEVVHRFAGQKEEAARFLLGRYGTQMRLYRRAIEQIW 1221

Query: 916  PNKSLVCLLIYVSEPKVFII 935
                  C L       V  +
Sbjct: 1222 RAPVAECYLYSFDGGFVVAV 1241


>gi|251764599|sp|Q1JCJ8|ADDA_STRPB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
          Length = 1222

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 163/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +       +     D+          K    +  + R      
Sbjct: 304  RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360  MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDITHFAIKILEEN---TDIRQSY 416

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 466  PQIFNQKFRDYQKKTEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 575  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 682  IQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +A    V 
Sbjct: 742  SQAKAEQAQANLYALALRANQFEKSGYKGLYCFIKMIDKVLETQNDLADVEVAAPKQAVN 801

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 802  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKVLLGETTLNS 861

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  +        
Sbjct: 862  VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 921

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 922  GKLLPLALREQLLTFQDWLLAIADVFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-- 777
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +  LE +  D   
Sbjct: 982  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIE 1041

Query: 778  --------------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                                +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1042 KSSRSLSDFTLPHFSKKVKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--REIDSNE 1099

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1159

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217

Query: 931  KVFII 935
            ++  +
Sbjct: 1218 EIVEV 1222


>gi|223932475|ref|ZP_03624477.1| recombination helicase AddA [Streptococcus suis 89/1591]
 gi|302023673|ref|ZP_07248884.1| ATP-dependent exonuclease subunit A [Streptococcus suis 05HAS68]
 gi|223898929|gb|EEF65288.1| recombination helicase AddA [Streptococcus suis 89/1591]
          Length = 1217

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 160/984 (16%), Positives = 320/984 (32%), Gaps = 129/984 (13%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----- 94
                  + +    L     +   ++    +    L    +  K +      K        
Sbjct: 270  AKYFANVEEVLDLLTG-LDSLDQKDLMERVEKVLLINDQSRGKGLTNANRPKDEHLIAFK 328

Query: 95   --------DLKEKLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
                     +   L+    E  ++   +    +     +         +  Y + K K  
Sbjct: 329  EEYNAGKSQIISGLRDLGQEVYELTLLKDYQIQALPMLILLRDFVLDFSQAYLDVKIKEA 388

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
              +F D+      +L++      IR    ++ + +++DE QD +  Q  ++  L      
Sbjct: 389  AFEFGDIGHFAIRILEEN---VDIRQFFQEKYHEVMVDEYQDNNHSQERMLDLL------ 439

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                 S+    F VGD KQSIY F  A+P     +  + Q       Q   +I L  +FR
Sbjct: 440  -----SNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQAD----SQAGKLILLKENFR 490

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            S  ++L   + +F+   + Q        T    +   GQ       E     +D Q    
Sbjct: 491  SQIEVLEATNAIFTRLMDRQVGEIKYDETHSLVAGSPGQKIAQPKHEMEYLIYDQQ---- 546

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
             +S  S  D+  +    +     +A  I  +   +             KDI +LV+KR  
Sbjct: 547  -DSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEE---------GADFKDITLLVQKRTH 596

Query: 386  TPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                  L   +   + I +V +         L +  ++   R I +  +D + V +LKSP
Sbjct: 597  ----NDLIISIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLKSP 652

Query: 445  LFNFSEDDIFKICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHI 494
            +F F ED++ +I  Q                  ++ +  +     K +  +  +      
Sbjct: 653  MFRFDEDELTRISLQAGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAF 712

Query: 495  AQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
            A+  S +D    I   K       +   G++    L        + E+  Y  L   I  
Sbjct: 713  AKMHSIYDLIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIVM 772

Query: 554  LEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVF----------S 599
            +++     K           N V++MT+H +KGLE   VFL++   +            S
Sbjct: 773  IDRALANDKDLADVQEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVIIS 832

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             K+   +  +  + D    P+   +         D ++ LK +   E  RLLYV +TRA 
Sbjct: 833  RKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQDNLQELKIANLSEQMRLLYVALTRAE 892

Query: 660  DQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             +L +    N                     + +  T+ D +                  
Sbjct: 893  KKLYLVGKGNADKLAKKYDGKKADGVLAQSTRESVATFQDWILAIDEAFSGEDLHFKKVF 952

Query: 704  INKDEWIAYEWST-------HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
            +  ++    +                 + + E I Q +D+    ++L    K  I  P +
Sbjct: 953  VTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKVAIELPSL 1012

Query: 757  LNPSTIDTKGKT---------------------NLESLLSDNQTFNRGLIIHKLLQVIFT 795
              PS I    +                         S          G  +H+L+Q +  
Sbjct: 1013 RTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLDL 1072

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVS- 852
                       +    +A+     +    +  I    +  +    ++     + E   + 
Sbjct: 1073 SWLVTEDTVREALEAVHAEQAIKDKIN--VQMILDFFDTDLGREILANTDKLHREAPFAS 1130

Query: 853  -GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
                +  +++ ++ G ID   +   +I +F+YKT  +   +   +   + AQ+ +Y + L
Sbjct: 1131 LQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKY--DQPSQLSQRYQAQMQLYAEAL 1188

Query: 912  KDSYPNKSLVCLLIYVSEPKVFII 935
            K +Y    + C LI +   ++ ++
Sbjct: 1189 KKAYKIDRVDCHLILLGGERIEVV 1212


>gi|317132410|ref|YP_004091724.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3]
 gi|315470389|gb|ADU26993.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3]
          Length = 1186

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 147/976 (15%), Positives = 318/976 (32%), Gaps = 109/976 (11%)

Query: 35   VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP 94
            +  +      ++L + +     +  +  +     +      +    +K +    +  +  
Sbjct: 245  LEKAYGGAFASLLAQVERACSLANAKDWDGVTVAVQGMVYDRLGAARK-MDDPALRDRLK 303

Query: 95   DLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
             +++ +K+  D+             R +  ++     +   + K L++ +   K +  +L
Sbjct: 304  GVRDTVKEQMDKLCAGVLCCTEAEYRVDVERLRPLAESLFGVVKELDSRFYAKKAEKGIL 363

Query: 148  DFEDLIINTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            DF DL      LL+ K        Y +  +   +L+DE QD +  Q  + R+++ +    
Sbjct: 364  DFGDLERLALRLLRGKDGSPTPAAYAVAAQFEEVLVDEYQDVNPAQDAIFRAVSRE---- 419

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                   + LF VGD KQSIY F  A P+  + +K        +     + I L  +FRS
Sbjct: 420  ------EQNLFMVGDVKQSIYRFRKATPELFIEKKETFSPY--DGHTYPARIVLGRNFRS 471

Query: 267  TADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
             A +   V+ VF    +    G+       +   +    + G                  
Sbjct: 472  RAGVAEAVNFVFGQLMSRELGGIDYGEEERMTPAAVYFDRPG--------------NEAD 517

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLVRKR 383
                          + +A + AR +A T++ M+    T+   G  R +  KD  +L+R  
Sbjct: 518  FALHLVETAAYDENDDNAMLEARYVARTVARMLREGYTVQGAGGPRSVVCKDFCILLR-- 575

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                L       LK +  +    +          +  ++AL R + +   D+  + ++ S
Sbjct: 576  GANRLAQTYVDALKEE-GLPAYADIAGGYLGSYEVAVMLALLRVLDNPLQDIPLLSVMLS 634

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            P+F FS DD+  +  +  +   +Y  +   A      F   ++ + +L  +A        
Sbjct: 635  PVFGFSPDDLAGLRLEHPKG-HLYLAVLARAKAEGGHFAAFVEMLDDLRRLAAVLPSDRL 693

Query: 504  FTLILGAKKGRQ-QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               +  +            G      L   L++    E   +  L   +  +++      
Sbjct: 694  ILRVYESTAFLDICTAMPGGAGRRANLRLLLDYARSYEAAGFRGLAGFVRFVDRVAEDAD 753

Query: 563  RAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
               +     + + VR+M++H +KGLE PV  +   G +       +     P       +
Sbjct: 754  LPPASTVSEDADVVRVMSIHKSKGLEFPVCIVAGLGRRFNREDSRRGTLFHPEYGFGSYL 813

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK--- 675
                            +    ++ +  E  R+LYV MTRA ++LI      T+ +     
Sbjct: 814  RDPALSCHVTTLPREVVRIETERGSMAEEMRVLYVAMTRAKEKLICVAAVPTAEKAVASA 873

Query: 676  -----------------SNQRTWYDMVYD-----------SFHNDERVKKIKLTNSINKD 707
                                     ++             +    E +  +   +S+   
Sbjct: 874  AALLRPDGAGIVPFAAMQAPNFMAWLLACVLRHPSCGCLRALAGLEELSILSTAHSMEPV 933

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
               A       P+      +   ++L+ E +       P +     P  L  S I  +  
Sbjct: 934  IAQAEGACKTAPDVEQETPQPVDEELLAEIRRRIAFVYPHEPLTRLPSKLAVSEIAEERL 993

Query: 768  TNLE------SLLSDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       + +      +G  +H  +Q+  +  L   +          K+A L P +
Sbjct: 994  HRDFGVRRPSFVQAGLSAAQKGTALHTFMQLADLANLHSTEDVAAEARRLVKSAHLLPEE 1053

Query: 820  EYKNLLLSITRLLENPMMTTA-MSCDSYSEVSVSGKINCPK------------------- 859
                    +   LE P+      +   + E+  +  ++  +                   
Sbjct: 1054 GKAVDAAQVLAFLETPLFARLRRAERIWKELRFNLTVSPDELSGMGMDVPAPTNTALDVR 1113

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
              I++ G  D + +     FI +YKT H      + +   +  QL++Y + +   +    
Sbjct: 1114 AQIVLQGMADVVWVEDGRYFILDYKTDH---AGADELRARYAGQLALYARAVGQIFRTPV 1170

Query: 920  LVCLLIYVSEPKVFII 935
              C L   ++  +  +
Sbjct: 1171 AACYLYGFAQGALVEL 1186


>gi|315652079|ref|ZP_07905080.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum DSM
            3986]
 gi|315485726|gb|EFU76107.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum DSM
            3986]
          Length = 1152

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 150/893 (16%), Positives = 290/893 (32%), Gaps = 93/893 (10%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            + I  K  +   KL K  D F K R             A + L K   + + E K+   +
Sbjct: 288  KAIRDKYKENILKLAKDYD-FDKDRVSLEEKSEKAKIRAVVDLTKKYISLFNEKKRDKNL 346

Query: 147  LDFEDLIINTN-DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            +DF D+       LL +   S  +     +E + I IDE QD++ +Q  ++ ++      
Sbjct: 347  VDFSDIEHLALGILLDENKNSTEVAEAYKKEFSEIYIDEYQDSNYLQEAIVMAI------ 400

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                      +F VGD KQSIY F  A PK  +++ +  +       +    + L  +FR
Sbjct: 401  ------EKNNIFMVGDVKQSIYGFRQASPKLFMKKYKNFKSFEGADNEDAKKVILSKNFR 454

Query: 266  STADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            S  ++L   + +F     E+  G+  D    +   ++                +   +  
Sbjct: 455  SRKNVLDGANAIFKKIMKEDIGGIEYDEDAALYLGANF---------------EEGKKEY 499

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
              +   T         S   + AR IA  I  +            R ++  DI++LVR  
Sbjct: 500  ISEVMLTDVGSIEDDTSDIELEARAIAKRIKEL---KKDLKVDGGRDLKYSDIVILVRSN 556

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                 I      + ND  I     +         ++ ++A+   I +   D+     L S
Sbjct: 557  -----IGESIAKVLNDENIPAYAENNKGYFKTFEVRKILAILAAIDNPYSDVDLTAFLNS 611

Query: 444  PLFNFSEDDIFKICTQRHETET--------------VYEYIQKFANCGISKFQHVIKYIH 489
             +   ++ ++  I     + +                 E           K +  +  + 
Sbjct: 612  EIVGMTDLELANIVADYRKKQNIEKSKQVRMMDAVIFEENEGGIEESTKKKIRTALYLLD 671

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQ 548
            E    + + +       I           +  G +     L   ++       + YS L 
Sbjct: 672  EYRQKSTYMNIQSLLQDIYNNTDFLNITAAMPGGQVRKANLMLLISKARTFGNSGYSGLY 731

Query: 549  ELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
              I  + +                N + VRIMT+H +KGLE PV FL +T          
Sbjct: 732  NFIRYIAKLKDFDNDFGEASILSENDDIVRIMTIHKSKGLEFPVCFLANTDRSFNKTDLK 791

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            + M I                 K  +   + +   L      E  R+LYV +TRA +++I
Sbjct: 792  QGMVIDNDFGLGMQYVDSEHNIKDSSIKQNVIKYKLGTELMGEELRVLYVALTRAMEKMI 851

Query: 664  ICKHSNTSNEKK------------SNQRTWYDMV----YDSFHNDERVKKIKLTNSINKD 707
            +    N   +               +  ++ D++         +  +     L +     
Sbjct: 852  VSGTCNNIEKSLEINKENPKFLDIRSCNSYLDLILLSFDKIHFDLRKYDYKSLLDDEKLT 911

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            +    +       +     +E   +L         +    K  ++E   ++ S      +
Sbjct: 912  QKEVRDLHKVFEGSDVQNYDELKSRLDFLYPYSVNVDLKTKFSVSEIKRMSQSEDFELAE 971

Query: 768  TNLESLLSD---NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
               +        +    RG   HKL+Q +         + +  +      L     Y+ L
Sbjct: 972  NKRKEKSDSKLTSNAGERGNAYHKLMQKLHYENIDGFADRLD-FVKAEIALLKNVSYREL 1030

Query: 825  L--LSITRLLENPMMTTA--MSCDSYSEVSV-------SGKINCPKKDIIISGRIDQISI 873
            +    I + L+  +  T      +   E            K+    + ++I G ID    
Sbjct: 1031 INPEDIVKFLDTSLGKTFIKYRKNLKRENRFIMGISAREAKMGDSDETVLIQGVIDAYID 1090

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +   + + +YKT H   ++   +   +  QL +Y+K L+     K +  + IY
Sbjct: 1091 TDNGLILADYKTDHV--KDEAVLIDRYKTQLGLYKKSLE-MSTGKQVRDVFIY 1140


>gi|50913958|ref|YP_059930.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394]
 gi|81602230|sp|Q5XCW6|ADDA_STRP6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|50903032|gb|AAT86747.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394]
          Length = 1222

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 161/1025 (15%), Positives = 327/1025 (31%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +       +     D+          K    +  + R      
Sbjct: 304  RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360  MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 466  PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 575  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 682  IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +A    V 
Sbjct: 742  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 802  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  ++       
Sbjct: 862  VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 922  GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +            
Sbjct: 982  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                          S  +  +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217

Query: 931  KVFII 935
            ++  +
Sbjct: 1218 EIVEV 1222


>gi|21910050|ref|NP_664318.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes
            MGAS315]
 gi|81479324|sp|Q8K815|ADDA_STRP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|21904241|gb|AAM79121.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes
            MGAS315]
          Length = 1222

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 160/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +      ++     D+          K    +  + R      
Sbjct: 304  RDFKCLYG----KAGLDRLIRDVTDLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360  MYQKDCFPLLEQLQDFVFAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 466  PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 575  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            +Q+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 682  MQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +A    V 
Sbjct: 742  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 802  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  ++       
Sbjct: 862  VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 922  GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +            
Sbjct: 982  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIE 1041

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                          S  +  +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1159

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217

Query: 931  KVFII 935
            ++  +
Sbjct: 1218 EIVEV 1222


>gi|251764601|sp|Q9A0H3|ADDA_STRP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
          Length = 1222

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 159/1025 (15%), Positives = 325/1025 (31%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +       +     D+          K    +  + R      
Sbjct: 304  RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360  MYQKDCFSLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 466  PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +  +      
Sbjct: 575  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIATDGGQQNY 621

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 682  IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +     V 
Sbjct: 742  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVATPKQAVN 801

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 802  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  ++       
Sbjct: 862  VKVSMETLPYQLNKQELRLATLSEEMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 922  GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +            
Sbjct: 982  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                          S  +  +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217

Query: 931  KVFII 935
            ++  +
Sbjct: 1218 EIVEV 1222


>gi|320546489|ref|ZP_08040804.1| exonuclease RexA [Streptococcus equinus ATCC 9812]
 gi|320448874|gb|EFW89602.1| exonuclease RexA [Streptococcus equinus ATCC 9812]
          Length = 1208

 Score =  344 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 140/878 (15%), Positives = 292/878 (33%), Gaps = 120/878 (13%)

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
              +  +  Y +AK +    +F D+     ++L++      IR     + + +++DE QD 
Sbjct: 362  FVQDFSEQYLQAKIQENSFEFSDIAHFAIEILEENPD---IRKFYQDKYHEVMVDEYQDN 418

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            +  Q  ++  L           S+    F VGD KQSIY F  A+P+   ++ +  Q+  
Sbjct: 419  NHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQENP 467

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
             +      +I L  +FRS +++L   + +F+       L ++S   I +        G+ 
Sbjct: 468  EH----GKLILLKENFRSQSEVLDATNSIFTH------LMDESVGEILYDGMHQLVAGSD 517

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
               E              +      +   +ES      + +A  I  +   +        
Sbjct: 518  AQKEAHPENETKVLIYDTDEANGAPEGTEEESINPNEVKLVAKEIIRLHNEEH------- 570

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRF 427
              +  +DI +LV  R                Y I  V           + +  ++   R 
Sbjct: 571  --VPFEDITLLVSLRTRNN----AILQTFEYYGIPLVTDGGEQNYLKSVEVMVMLDTLRA 624

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG---------- 477
            + +  +D + V +++SP+F F+EDD+ ++  Q  E E      QK  +            
Sbjct: 625  LDNPLNDYALVALMRSPMFAFNEDDLARLALQTLEDEHKANLYQKLEHALSGTGEHADLM 684

Query: 478  ----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEF 532
                 +K +  +  +      A++ S +D    I   +       +     +    L   
Sbjct: 685  TAALQNKLKDFMDCLASWREFAKWHSLYDLIWKIYNERFYYDYVGNLPRAEQRQANLYAL 744

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVV 588
                   E+  +  L   I  +++   +             N V +MT+H +KGLE   V
Sbjct: 745  ALRANNFERGGFKGLSRFIRMIDKVLESENDLADVEVALPKNAVNLMTIHKSKGLEFKYV 804

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIK 637
            F+++   +         + +                          +            +
Sbjct: 805  FILNLDKRFSIQDMTSPLILSRQNGAGIKYLADMREELETDYFPAVKVSMDTMPYQLNKR 864

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN----------------EKKSNQRTW 681
             L+ +   E  RLLYV MTRA  +L +   ++                    ++    T+
Sbjct: 865  ELRLAMLSEQMRLLYVAMTRAEKRLYLVGKASAEKLVDKYSGKSENNHIPISERETFMTF 924

Query: 682  YDMVYDSFHNDERVK-----KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
             D +   +   + +            +  K   I    +    +     + E I + +D 
Sbjct: 925  QDWILAIYDTYKNLPFKVEFVTDDDLTEEKIGQIEMTSAIKPDDLKDNRQTENIAEALDR 984

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------------NLESLL 774
             +  +KL +  K  IN P +  PS +    +                          S  
Sbjct: 985  LEAVEKLNTEFKAAINLPSLRTPSQVKKLYEPVMDVDGVDVMAKPHQAKPTFELPDFSKK 1044

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
            +  +    G  +H+L+Q I    +    +  ++    +A+       +  L  +    E 
Sbjct: 1045 AKVEATAIGSAMHELMQRIILSEQVTLDDITSALAQVSAEDDVKSCIR--LEHVLDFFEG 1102

Query: 835  PMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
              +   +  +    Y E   +   +     +  ++ G +D   +    I +F+YKT  + 
Sbjct: 1103 SELGQMIQKNVDKIYREAPFAMLKEDPESNEKFVVRGIVDGYFLFDDRIVLFDYKTDRYT 1162

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
                E I   +  Q+++Y + L  SY  + +   L+ +
Sbjct: 1163 --NSEDIKKRYQGQMALYAEALSKSYRIEQVDKYLVLL 1198


>gi|228477150|ref|ZP_04061788.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126]
 gi|228251169|gb|EEK10340.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126]
          Length = 1217

 Score =  344 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 152/1022 (14%), Positives = 322/1022 (31%), Gaps = 148/1022 (14%)

Query: 13   YELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
             + +  D      F    +       +       +      L+ A      +     L  
Sbjct: 243  KDGLLADFLA---FLRDHLGLAQREFAKAKYLNNVSDAISLLEGALAN--DQTDMEDLLK 297

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY------------KM 119
              LT         +T+  +++    KE   K+++EF+      +T              +
Sbjct: 298  QLLTLSGGTGLTNMTRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDI 357

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                          +  Y +AK +    +F D+      +L++      +        + 
Sbjct: 358  LPLLELLQAFVLDFSDQYLQAKTQENAFEFSDIAHFAIRILEENPE---VAASYRDRYHE 414

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +++DE QD S  Q  ++  L           S+    F VGD KQSIY F  A+P+    
Sbjct: 415  VMVDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNG 463

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRH 297
            + ++  +          +I L  +FRS +++L   + VFS   +     +  D T  +  
Sbjct: 464  KFQLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVA 519

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S +  +       E ++   D       E       S  + S        +   I  + 
Sbjct: 520  GSEKQKEPHPENETEVLIYNSDEASVTPDEEGADQPISSGEIS-------LVIKEIIKLH 572

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHL 416
                         ++ +DI +L   R               ++ I +V ++ +    + L
Sbjct: 573  EQG----------VRFEDITLLAPTRNTYLD----LMASFEEHGIPLVPDEYKSSYLESL 618

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
             +  ++   R I +  +D + V +L+SP+FNF+EDD+ +I  Q  + +   + +      
Sbjct: 619  EVMIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLARIAVQADKGQFYDKLLAAHTKS 678

Query: 477  G----------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525
            G           +K    I+ + +    +++ S +D    I   +       S     + 
Sbjct: 679  GLHPEVVTQGLDAKLTLFIETLADWRDYSKWHSLYDLIWKIYDDRFYYDYVGSLPRAEQR 738

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTA 580
               L          E+  +  L   I  +++                  N V +MT+H +
Sbjct: 739  QANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVP-KNAVSLMTIHKS 797

Query: 581  KGLESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKS 627
            KGLE   VF++    +   H                  +  +  L D     +       
Sbjct: 798  KGLEFKYVFVLQMNRKFIGHSRDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVL 857

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS---------------- 671
                  +  +  ++++  E  RLLYV MTRA  +L +    +                  
Sbjct: 858  ETLTFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLP 917

Query: 672  ---NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----L 724
                ++ +  + W   +  +F   +    ++   +         +       N       
Sbjct: 918  VALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAIGQVEVQAVVNADDLSNN 977

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------------- 768
             + E IK+ +   +  +KL       I+ P +  PS +    +                 
Sbjct: 978  RQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEV 1037

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                             +       G   H+L+Q +    +   ++   +          
Sbjct: 1038 QPLETATTFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQAL--SRVSADD 1095

Query: 818  AKEYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSG--KINCPKKDIIISGRIDQISI 873
              + +  L  +    +  +    ++       E   +   +    K+D ++ G ID   +
Sbjct: 1096 QVKARVQLEKLLGFFDTELGKLILANRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLL 1155

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
             +  I +F+YKT          +   +  Q+S+Y K L  +Y    +   LI +    + 
Sbjct: 1156 LEDRIVLFDYKTDRFT--HPSELKERYKGQMSLYAKALSQAYQIDKIDKYLILLGGKDLE 1213

Query: 934  II 935
            ++
Sbjct: 1214 VV 1215


>gi|300361736|ref|ZP_07057913.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03]
 gi|300354355|gb|EFJ70226.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03]
          Length = 1204

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 170/1025 (16%), Positives = 325/1025 (31%), Gaps = 136/1025 (13%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ----------TLQQASQTQCIEERFS 67
            + + PL   +VSD+   V   +          A+           L    ++   ++ ++
Sbjct: 210  QQIKPLLLKEVSDLKAEVEALLAEPEINGSDLAKVKENYDIFSNRLDSFLESLNKDQPYN 269

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSP----------DLKEKLKKSQDEFIKIRDRFNTY 117
             + +  +  KF        +  ++             DL ++LKK    F  + ++    
Sbjct: 270  EIRASLMNCKFEKAVRKSKKWSDESIEVYQESQDLKSDLNDQLKKIFASFFVVEEKEQVA 329

Query: 118  KMFKSTLASLTLAKY---LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKI 173
             + KS     T+      L   + + K++  ++D+ D+      +L     +A I +   
Sbjct: 330  VLQKSEKIVKTIVAAEKKLIQKFGQLKREQNLIDYSDMEQFAFSILTTDTSNAHIAQEYY 389

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             ++ N ILIDE QD + +Q  +I+++               TLF VGD KQSIY F  A 
Sbjct: 390  QEKFNEILIDEYQDVNALQENIIKAI---------KKKGQNTLFMVGDVKQSIYGFRQAR 440

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDS 291
            P   L +     K           I L  +FRST  +   V+++F+     N  G+    
Sbjct: 441  PDLFLSKYHTYGKD-----NDSEKIILADNFRSTKRVTKTVNELFNPVLTTNFGGIDYKK 495

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
               ++  +S          +   +          ++   S ++    +       + +  
Sbjct: 496  EGQLQFGASY---------YPADLPTASEYIFTDKKQTQSAYEDQYGDEMDFSEVQMVIA 546

Query: 352  TISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
             I  +   +    + +   KR ++  DI ++ R R D                + +   D
Sbjct: 547  RIKQLKAENFQVWDRRTQLKRPLEYSDIAIITRTRSD----NLQVMQEFAKADLPLFVTD 602

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                     +  +M   R I + + D+  V +++SPLFNF E ++ ++  +         
Sbjct: 603  AQNYFQTFELIMIMNYLRLIDNAQQDIPLVAVMRSPLFNFKEPELAQLRVKTPAGNFYTA 662

Query: 469  YIQKFANCGI--SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525
                 +       K +  +K +  L   A      +    I       +       G + 
Sbjct: 663  LTNFASVNSALGKKCREFLKQLETLRSFAATHRISELVWSIYEKTHLLEIVTGLPNGQQR 722

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTA 580
               L+         E   +  L + IS +E+                  N V++MT+H +
Sbjct: 723  RVNLESLYERATSYESAGFKGLYQFISFIERMRKNQKDLAQPLLSDKADNAVKLMTIHAS 782

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE PVVF++  G Q  +        I        G+ I     +  + + S      +
Sbjct: 783  KGLEFPVVFVMGLGHQYQTRDLSGNFTISQKEL---GLTIKEKNYRIDSLVKSLADVQKR 839

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---------------- 684
            +   EE  R+LYVG+TRA  +LI+    N    K+    +  D                 
Sbjct: 840  QQMLEEEARILYVGLTRAQQKLILVASVNEIENKQKKWLSELDQKKDTIPLVKKINAQSP 899

Query: 685  -------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT--------------- 722
                   +      D+ ++ +          +         PE                 
Sbjct: 900  LDFLGPKLEQRHEFDQTIQNMTSALEEQDKLYYLKFDLDLEPEKVKSQNENSQEVNSKVN 959

Query: 723  -----------PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
                       P E            +I K    PI  ++    +++ S    +      
Sbjct: 960  KVVQELYDFKYPFEDATKTTAYQSVSEIKKAFNDPIDKELENSRLISSSNRYLQPIDETP 1019

Query: 772  SLLSDN--QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSI 828
            + L +        G  +H +LQ          +N               +     L    
Sbjct: 1020 TFLEEQKFTGAEIGTAMHLVLQYYNYEGNKDLENLDQEIDQLVELGKLNSLMVPYLSKEA 1079

Query: 829  TRLLENPMMTTAMSCD---SYSEVSVS---------GKINCPKKDIIISGRIDQISISQQ 876
                                + E   S            + P   I++ G +D    ++ 
Sbjct: 1080 LNWFVMSDFAKEFWKQPNKLHRESQFSSLVNASELFSDFSDPSAKILVHGTVDGYFEAKD 1139

Query: 877  NIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPK 931
             + +F+YKT        E     I   +  QL +YE+ L +   +K +    LI +   K
Sbjct: 1140 GLVLFDYKTDFVDKTNEEQAIEKIKQKYTGQLRLYEQALNEMNNDKKVIGKYLILLDARK 1199

Query: 932  VFIIP 936
            V  + 
Sbjct: 1200 VVPVD 1204


>gi|306821093|ref|ZP_07454709.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp.
            margaretiae ATCC 43715]
 gi|304550786|gb|EFM38761.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp.
            margaretiae ATCC 43715]
          Length = 1149

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 181/979 (18%), Positives = 353/979 (36%), Gaps = 98/979 (10%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             E I   L  L     +     +  S E      ++K + L+  +  +  ++    + +F
Sbjct: 212  REDIATTLDDLIEKSETIYKMSIDTSYEENIVDDIEKLRYLKDIALNKGYDDFVDEIKTF 271

Query: 73   FLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT---YKMFKSTLAS 126
             L++    +K     +T  I     ++ +K+     +   ++         K + +    
Sbjct: 272  SLSRLKAKKKTDDVQVTDIIKDVRTNIIKKIIDKNLKKYTVKSDSYIKYMNKSYNAVRGL 331

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              L       Y + K +  + DF DL     DLLK  +    IR K+ ++ ++I  DE Q
Sbjct: 332  CNLVGEFEKVYRQKKYEQNMFDFNDLEHFALDLLKNEE----IRTKVRKKYSYIFYDEYQ 387

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D++ +   +I S+  +             LF VGD KQSIY F  A+P   +++    + 
Sbjct: 388  DSNEVHDSIIESIAAE-----------NNLFFVGDVKQSIYGFRLADPSIFIKKYEDYK- 435

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQ 304
                  +  + I+L  +FRS+  IL   + +F      +   +  D    +R        
Sbjct: 436  ---GNTENNAKIDLSSNFRSSRQILDFCNLIFENIMVKSTSDMDYDEDAMLRTNDETPYD 492

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
               ++L     S  +     ++       D         I+A   A  I  M+  D    
Sbjct: 493  EKNIELNFIDKSHDEDDEKLEEMLSNLSDD--------DIMATLTAKQIVKMMEDD---- 540

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                + I  KDI+VL R   +              Y I V  + +    D L +   + L
Sbjct: 541  ----KSINFKDIVVLKRSFANGT---SAYSKAFLQYNIPVFIDYQSSSFDVLEVSIFIDL 593

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----EYIQKFANCGISK 480
             + I +   DL  +  L S +  FS ++I KI +   + +  Y     Y +++ +   +K
Sbjct: 594  LKIIDNIRQDLPLISTLMSGVGGFSIEEITKIKSSNLDEKFFYNVFFAYEREYDDEISAK 653

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539
             +   K I +   +  +    +F   +L   K +    S   G+  +  L          
Sbjct: 654  IRKFRKKIEDYAKLQNYMRLDEFVDFVLIDSKYKDYVSSLTSGDMRLQNLSIVREKATEF 713

Query: 540  EQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             QN   SL   +  L+            +  S N N VRIM++H +KGLE P+V + D  
Sbjct: 714  MQNENKSLFNFLLYLDSILKNKSDRIEPQKVSENQNVVRIMSIHKSKGLEFPIVIVNDIQ 773

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +        ++ I  +L                      +I  LKK+   E  R+LYV 
Sbjct: 774  KKFNMQDTKSEVIIDSNLGIGVDYVDVDENYYLPTLSKKCIIAKLKKNILSEEIRILYVA 833

Query: 655  MTRASDQLIICKHSNTSNEKKSNQ-------------RTWYDMVYDSFHNDERVKKIKLT 701
            +TRA  +LI+  H N++ +K  +                + D++  +F ND    +  + 
Sbjct: 834  LTRAKKKLILNGHVNSNLQKTRSYMGTGLFPKNLNSIDNYQDLILYAFRNDMEFFEKNVE 893

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREET-------------IKQLMDEQKIPKKLFSPIK 748
            +S           +     +  LE+E+               ++  +            K
Sbjct: 894  DSEENRISSVNFVNIDSLTDNILEKEDVKLKFYEMLNNITLSEEEKNTLDEKYLFEYKYK 953

Query: 749  NDINEPYILNPSTIDTKGKT-NLESLLSDNQTFN--------RGLIIHKLLQVIFTLPEH 799
            +D+ +   +N +++  +     +E LL+ ++  +         G + H  LQ I     +
Sbjct: 954  DDVEKEIKINVTSLSKEKNKYRIEKLLTYSEYIDKSYFSPEKIGTLNHMFLQHIDFEKSY 1013

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCD-SYSEVSVSGKIN 856
              ++            +   E   ++    I   L++       +    Y E S      
Sbjct: 1014 TLEDLKNQLIYMIDNEFITNEESEVINLSRIYDFLQSEFGQRIRNAQKIYKEESFVMNY- 1072

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
                  ++SG +D     + +I + +YKT H    E+ +    + +QL +Y+  ++ ++ 
Sbjct: 1073 ---GGSVLSGTVDLFFEEENHIVLVDYKTDHIPQYEMTNRASYYKSQLDLYKDAIQKAFG 1129

Query: 917  NKSLVCLLIYVSEPKVFII 935
             K     + ++S  K   +
Sbjct: 1130 KKVSQSYIYFLSLGKYVEV 1148


>gi|15674822|ref|NP_268996.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes
            M1 GAS]
 gi|13621954|gb|AAK33717.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
            M1 GAS]
          Length = 1210

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 159/1025 (15%), Positives = 325/1025 (31%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 232  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 291

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +       +     D+          K    +  + R      
Sbjct: 292  RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 347

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 348  MYQKDCFSLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 404

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 405  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 453

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 454  PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 507

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 508  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 562

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +  +      
Sbjct: 563  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIATDGGQQNY 609

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 610  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 669

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 670  IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 729

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +     V 
Sbjct: 730  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVATPKQAVN 789

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 790  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 849

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  ++       
Sbjct: 850  VKVSMETLPYQLNKQELRLATLSEEMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 909

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 910  GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 969

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +            
Sbjct: 970  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1029

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                          S  +  +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1030 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1087

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1088 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1147

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1148 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1205

Query: 931  KVFII 935
            ++  +
Sbjct: 1206 EIVEV 1210


>gi|71903240|ref|YP_280043.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180]
 gi|123640147|sp|Q48UB8|ADDA_STRPM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|71802335|gb|AAX71688.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180]
          Length = 1222

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 163/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +       +     D+          K    +  + R      
Sbjct: 304  RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360  MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDITHFAIKILEEN---TDIRQSY 416

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 466  PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 575  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYSIPIVTDGGQQNY 621

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 682  IQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +A    V 
Sbjct: 742  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 802  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  +        
Sbjct: 862  VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 921

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 922  GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-- 777
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +  LE +  D   
Sbjct: 982  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIE 1041

Query: 778  --------------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                                +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1042 KSSRSLSDFTLPHFSKKVKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--REIDSNE 1099

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1159

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217

Query: 931  KVFII 935
            ++  +
Sbjct: 1218 EIVEV 1222


>gi|281490502|ref|YP_003352482.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. lactis
            KF147]
 gi|281374320|gb|ADA63853.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis
            KF147]
          Length = 1203

 Score =  343 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 175/1044 (16%), Positives = 313/1044 (29%), Gaps = 154/1044 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----------ILKKAQTLQ 54
            G    +S   +  D        +    + +  S+  G              IL     L 
Sbjct: 207  GFETYKSLIDLSADFSADIKENLLIFFELLETSLTNGVVAKKGAGRDKANLILDNKNELL 266

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112
            +A  T+       L  S     +    K+ I   + K     K+ L  S+ +  +IR   
Sbjct: 267  EAITTKDFATFTELFLSIDTDIRVGSSKDEILSALKKDFSAQKQDLVGSKSKPGEIRKFV 326

Query: 113  ---------RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                          + F+               Y E KK     ++ D+     ++L++ 
Sbjct: 327  DKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSYLERKKNENSFEYSDIAHFAIEILEEN 386

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                 IR  + +  + I+IDE QDTS  Q  ++  L           S+   LF VGD K
Sbjct: 387  PD---IRETLREHYDEIMIDEYQDTSHTQERMLELL-----------SNGHNLFMVGDIK 432

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            QSIY F  A+P   L + +   K          +I L  +FRS  ++LT  + +F    +
Sbjct: 433  QSIYGFRLADPGLFLEKYKDYAK----TENPNQLIRLKENFRSRGEVLTFTNDIFKHLMD 488

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             +                    G +  +     + +    P+   +         + S  
Sbjct: 489  EKLGEMTYGKEEALV------QGNITDYPV---EPEKDFYPELLLYKENTSDEETDESEV 539

Query: 344  I----LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                   +  A  I  +I             ++ KDI +LVR + +   I  +       
Sbjct: 540  RISDGEIKGAAQEIKKLIEAG----------VEPKDIAILVRSKSNNNKIEDIL----LS 585

Query: 400  YKISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
            Y I VV    R      + +  ++ + R I +   DLS V ML+SPLF F+ED++ +I T
Sbjct: 586  YDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRIST 645

Query: 459  QRHETETVYEY-----------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            Q       ++             +       +K +   K   E   +    + HD    I
Sbjct: 646  QGSHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFYKKFTEWRKLVNQVAIHDLLWKI 705

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIK 562
                       + + G      L          E + Y  L + +      +EQ      
Sbjct: 706  YTETYYFDYVGALKNGEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLAS 765

Query: 563  RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   N VR+MT H +KGLE   VFL++  S+       + + +         +   +
Sbjct: 766  VNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSRENGLGMKLIADL 825

Query: 623  PQS------------KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                           K             +++   E  R+LYV  TRA  +L +      
Sbjct: 826  KDEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKE 885

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA------------------- 711
            +++K          +      D+     +           A                   
Sbjct: 886  TDKKSELDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPIKLNVYTKEELEAEK 945

Query: 712  ------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID-- 763
                   ++     E+   +        + + +       P +       I  PS +   
Sbjct: 946  LEFTSQPDFKKLVEESEKFDNIMAYSDEIQKAQKIMNYEYPHQAATELSSIQTPSQVKKR 1005

Query: 764  -------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
                                K     +           G   H  +Q         + + 
Sbjct: 1006 SYEKQLQVGEIQPKSEFTRVKKLDFSDFGPKKVTAAEIGSATHSFMQYADFS----QADL 1061

Query: 805  ITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPK 859
             +   T +   +  K    + +  I  L +             +  E   S        K
Sbjct: 1062 FSFQATLDEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFAK 1121

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            +  I+ G  D        I +F+YKT        I  I   +  Q+++Y + LK +Y   
Sbjct: 1122 EQYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSTISEIKERYRDQMNLYSEALKKAYDVN 1181

Query: 919  SLVCLLIYVSEPKVFIIPQNKLNK 942
             +   LI +  P+   +   KL+ 
Sbjct: 1182 QVDKYLILLGGPQQVFV--EKLDD 1203


>gi|139474037|ref|YP_001128753.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes
            str. Manfredo]
 gi|251764552|sp|A2RFA8|ADDA_STRPG RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|134272284|emb|CAM30537.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes
            str. Manfredo]
          Length = 1210

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 161/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 232  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 291

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +      ++     D+          K    +  + R      
Sbjct: 292  RDFKCLYG----KAGLDRLIRDVTDLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 347

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 348  MYQKDCFPLLEQLQDFVLVFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 404

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 405  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 453

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D + 
Sbjct: 454  PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVSY 507

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 508  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 562

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 563  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 609

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 610  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 669

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 670  IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 729

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +A    V 
Sbjct: 730  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 789

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 790  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 849

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  +        
Sbjct: 850  VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 909

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 910  GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 969

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +            
Sbjct: 970  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1029

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                          S  +  +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1030 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1087

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1088 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1147

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1148 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1205

Query: 931  KVFII 935
            ++  +
Sbjct: 1206 EIVEV 1210


>gi|260887200|ref|ZP_05898463.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185]
 gi|330839034|ref|YP_004413614.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185]
 gi|260863262|gb|EEX77762.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185]
 gi|329746798|gb|AEC00155.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185]
          Length = 1251

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 158/1055 (14%), Positives = 343/1055 (32%), Gaps = 151/1055 (14%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
              GL+  E    + K          + +     +         L  A   +     +   
Sbjct: 225  AAGLAAIERL--VEKAAALGYETCHAALEGDEKILK------DLLDALAARDWEGLRQAF 276

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              ++     F       +K    +   +    +K++LKK ++ +    +      +   +
Sbjct: 277  SSYAHARMSFPKGMDEEEKEEAKRLFTQPRDRVKQRLKKLRETYFHATEEELLDDLRALS 336

Query: 124  L---ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY------KID 174
                A + + K   A ++ AKK+  V+DF DL      +L  +D S            + 
Sbjct: 337  GMAHAIVDVVKDFTASFQAAKKERGVVDFNDLEHFALAVLCDKDASEGELRPSAQALALR 396

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            ++   +++DE QDT+ +Q  ++  +  D             LFAVGD KQSIY F  A+P
Sbjct: 397  EKYEEVMVDEYQDTNGVQEAILSLVARDD-----------NLFAVGDVKQSIYRFRLADP 445

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDST 292
            +  L+++R         G+K++ I+L  ++RS A +L  V+ +FS      A  L+ D  
Sbjct: 446  QLFLKKQREYPTL----GEKYARIDLSENYRSRAGVLAAVNWIFSQLMTPEAMELTYDDA 501

Query: 293  TTIRHRSSRIGQ-----VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA----- 342
              +   +           G V+L         S    +++   +   ++    +      
Sbjct: 502  AALHFAALYPEDSPKSLAGAVELHIIESDAESSVEPEEEDEEKAETSAVADGGAETPEGE 561

Query: 343  --------SILARRIAYTISNMIGTDTIF-SNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                    ++ A  IA  +  ++ +  +       R ++ +DI++L+R          + 
Sbjct: 562  EEEELKGFALEAAFIARRVRELMESGALVADKDGYRPLRWRDIVILLRA---VRTKADIL 618

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                 D  I               ++ ++A+   I +   D+     L SP+   S  ++
Sbjct: 619  LETLRDADIPAYATLDAGYFQATEVRVVLAVLAVIDNARQDVPLAAALCSPIVGLSVSEL 678

Query: 454  FKICTQRHETETVY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             ++     E +         +   KF+     K    ++ +     + +  S  +    I
Sbjct: 679  AELRLAALEEDIFGALLVVNDPAAKFSASLREKVDAFLRLLKGWRDLVRRVSVPELIWQI 738

Query: 508  LGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTI 561
                           G      L    +     E+ ++  L   +  +E     +   + 
Sbjct: 739  YRDTGYYDYVGGMAGGLLRQANLRMLADRARDYEETNFRGLFRFLRFIEKMQQMETDLSA 798

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             R      + VRIMT+H +KGLE PVV +   GS+       + + +   L         
Sbjct: 799  ARTLGEGEDVVRIMTIHKSKGLEFPVVIVAGLGSKFNMQDASQDLLMHRELGLGLYRTER 858

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT----------- 670
                +        + + +K+ ++ E  R+LYV MTRA ++LI+   +             
Sbjct: 859  EKSLRYSTFAREAVAERIKRESKAEELRVLYVAMTRAREKLILVGSTKKLAACAEGWCSF 918

Query: 671  --------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
                             ++ D +  +         ++   ++ +             +  
Sbjct: 919  VTQTERALPAHAALAANSFLDWLGMTVARHADGAPLREKAALLEKRVAPEGEDDSRWQVE 978

Query: 723  PL-------------------------EREETIKQLMDEQKIPKKLFSPIKND------- 750
             +                         E  E  ++  D +++    ++P   D       
Sbjct: 979  IVPASAVASVSAAVAEDNELFEKLRRGEPLEASEEKDDVEQMLAWQYAPHGVDNVPAKLS 1038

Query: 751  -INEPYILNPSTIDTK-----------------GKTNLESLLSDNQTFNRGLIIHKLLQV 792
                    +      +                  + +     +       G ++H +LQ 
Sbjct: 1039 VTELKRRFSVEDAAEEKAYIPLKEVHGSSKNVFKRPDFMQEKAGLSAAEYGTLMHAVLQH 1098

Query: 793  IFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEV 849
            I    +  R+          +   L P +     L ++   L++P+ T    +   + E+
Sbjct: 1099 IDLAGDTGREGLEKQLANMVEKELLLPEQAKAVRLDAVASFLQSPLGTRMKKARRLWHEL 1158

Query: 850  SVSGKINC--------PKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900
              S ++          P+  I + G ID +   +   + + +YKT  +       +   +
Sbjct: 1159 PFSRRLEAHSFYPEAEPEARIFVQGVIDVLFEDEAGALVLLDYKTDKNT--RPAAVREKY 1216

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              Q+ IY + ++     K     L  + +  V  +
Sbjct: 1217 RLQIEIYTEAVEAILGRKVAERCLYLLQDGSVVQL 1251


>gi|28896252|ref|NP_802602.1| ATP-dependent exonuclease, subunit A [Streptococcus pyogenes SSI-1]
 gi|28811503|dbj|BAC64435.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
            SSI-1]
          Length = 1153

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 160/1025 (15%), Positives = 328/1025 (32%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 175  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 234

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +      ++     D+          K    +  + R      
Sbjct: 235  RDFKCLYG----KAGLDRLIRDVTDLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 290

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 291  MYQKDCFPLLEQLQDFVFAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 347

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 348  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 396

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 397  PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 450

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 451  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 505

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 506  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 552

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 553  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 612

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            +Q+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 613  MQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 672

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +A    V 
Sbjct: 673  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 732

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 733  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 792

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  ++       
Sbjct: 793  VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 852

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 853  GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 912

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +            
Sbjct: 913  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIE 972

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                          S  +  +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 973  KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1030

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1031 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1090

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1091 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1148

Query: 931  KVFII 935
            ++  +
Sbjct: 1149 EIVEV 1153


>gi|306827618|ref|ZP_07460898.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC 10782]
 gi|304430181|gb|EFM33210.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC 10782]
          Length = 1222

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 160/1025 (15%), Positives = 326/1025 (31%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +       +     D+          K    +  + R      
Sbjct: 304  RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360  MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 466  PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 575  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+S +F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622  LKSVEVMVMLDTLRTINNPRNDYALVALLRSSMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 682  IQRAVIGRGAHPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +A    V 
Sbjct: 742  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 802  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  ++       
Sbjct: 862  VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 922  GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +            
Sbjct: 982  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                          S  +  +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYF 1159

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217

Query: 931  KVFII 935
            ++  +
Sbjct: 1218 EIVEV 1222


>gi|326405601|gb|ADZ62672.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis
            CV56]
          Length = 1203

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 178/1043 (17%), Positives = 321/1043 (30%), Gaps = 152/1043 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----------ILKKAQTLQ 54
            G    +S   +  D        +    + +  S+  G              IL     L 
Sbjct: 207  GFETYKSLTDLSADFSADIKENLLIFFELLETSLTNGVIAKKGAGRDKANLILDNKNELL 266

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112
            +A  T+       L  S     +    K+ I   + K     K+ L  S+ +  +IR   
Sbjct: 267  EAITTKDFTTFTELFLSIDTDIRVGSSKDEILSALKKDFSAQKQDLVGSKSKPGEIRKFV 326

Query: 113  ---------RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                          + F+               Y E KK     ++ D+     ++L++ 
Sbjct: 327  DKIKHGQLIEKYQNQTFEIAENLQKFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEEN 386

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                 IR  + +  + I+IDE QDTS  Q  ++  L           S+   LF VGD K
Sbjct: 387  PD---IRETLREHYDEIMIDEYQDTSHTQERMLELL-----------SNGHNLFMVGDIK 432

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            QSIY F  A+P   L + +   K          +I L  +FRS  ++LT  + +F    +
Sbjct: 433  QSIYGFRLADPGLFLEKYKDYAK----TENPNQLIRLKENFRSRGEVLTFTNDIFKHLMD 488

Query: 284  AQGLSEDSTTTIRHRSSRIGQ---VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             +                I           + +++   ++  + + +          +  
Sbjct: 489  EKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETD--------ESEVR 540

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
             +    +  A  I  +I             ++ KDI +LVR + +   I  +       Y
Sbjct: 541  ISDGEIKGAAQEIKKLIEAG----------VEPKDIAILVRSKSNNNKIEDIL----LSY 586

Query: 401  KISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I VV    R      + +  ++ + R I +   DLS V ML+SPLF F+ED++ +I TQ
Sbjct: 587  DIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISTQ 646

Query: 460  RHETETVYEY-----------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                   ++             +       +K +   K   E   +    + HD    I 
Sbjct: 647  GSHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFYKKFTEWRKLVNQVAIHDLLWKIY 706

Query: 509  GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIKR 563
                      + + G      L          E + Y  L + +      +EQ       
Sbjct: 707  TETYYFDYVGALKNGEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASV 766

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  N VR+MT H +KGLE   VFL++  S+       + + +         +   + 
Sbjct: 767  NIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSRENGLGMKLIADLK 826

Query: 624  QS------------KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                          K             +++   E  R+LYV  TRA  +L +      +
Sbjct: 827  DEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKET 886

Query: 672  NEKK-------------------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            ++K                     N    +     +  N  ++       +    E    
Sbjct: 887  DKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPMKLNVYTKEGLEAEKI 946

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKK------LFSPIKNDINEPYILNPSTID--- 763
            E+++       +E  E    +M      +K         P +       I  PS +    
Sbjct: 947  EFTSQPDFKKLVEESEKFDNIMAYSDEIQKAQKIMNYEYPHQAATELSSIQTPSQVKKRS 1006

Query: 764  ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
                               K     +           G   H  +Q         + +  
Sbjct: 1007 YEKQLQVGEIQPKSEFTRVKKLDFSDFGPKKVTAAEIGSATHSFMQYADFS----QADLF 1062

Query: 806  TSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKK 860
            +   T +   +  K    + +  I  L +             +  E   S        K+
Sbjct: 1063 SFQVTLDEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFAKE 1122

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
              I+ G  D        I +F+YKT        I  I   +  Q+++Y + LK +Y    
Sbjct: 1123 QYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQ 1182

Query: 920  LVCLLIYVSEPKVFIIPQNKLNK 942
            +   LI +  P+   +   KL+ 
Sbjct: 1183 VDKYLILLGGPQQVFV--EKLDD 1203


>gi|94990159|ref|YP_598259.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270]
 gi|251764561|sp|Q1JHM1|ADDA_STRPD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|94543667|gb|ABF33715.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270]
          Length = 1222

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 162/1025 (15%), Positives = 327/1025 (31%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +       +     D+          K    +  + R      
Sbjct: 304  RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360  MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D+  
Sbjct: 466  PQIFNQKFRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDALY 519

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 575  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 682  IQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +A    V 
Sbjct: 742  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVAAPKQAVN 801

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 802  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  +        
Sbjct: 862  VKVSMETLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKL 921

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 922  GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES------- 772
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +  LE        
Sbjct: 982  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041

Query: 773  -----------LLSDNQTF----NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                            +      + G  +H+L+QV+       ++  + +   +      
Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEVSHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIASNE 1099

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGNP 1217

Query: 931  KVFII 935
            ++  +
Sbjct: 1218 EIVEV 1222


>gi|331702530|ref|YP_004399489.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri
            NRRL B-30929]
 gi|329129873|gb|AEB74426.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri
            NRRL B-30929]
          Length = 1252

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 150/1027 (14%), Positives = 310/1027 (30%), Gaps = 156/1027 (15%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEER-------FSLLSSFFLTQKFTPQKNIITQEINKK 92
            E      L   + LQ+A       +        F       LT+    QK    Q I   
Sbjct: 250  EKAFTDQLAAIEALQKAVSNCTSFDDVRKSLTGFEFADLPRLTKPQGEQKQFHGQ-IRAI 308

Query: 93   SPDLKEKLKKSQDEFIKIRDR---FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
            +   K+      +++  + ++          +     ++  K     YE  K +  +++F
Sbjct: 309  NQQTKKDFNAFCNKYFGMDEQANVDLMAAAKQRVAKLISAVKAFRTAYEATKHQRHLMEF 368

Query: 150  EDLIINTNDLLKKR-DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
             D+      +L      +  ++ K+  +   I+ DE QD + +Q  ++  L ++      
Sbjct: 369  IDIEQAAYRILNDDSPQARQVQAKLRDQYYEIMTDEYQDNNRLQDAILNKLAKE------ 422

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                    F VGD KQSIY F  A+P+  + ++R        A     +I L  +FRST 
Sbjct: 423  ---GGGNRFMVGDSKQSIYRFRLADPQMFINKQRTYS----LADNDDELITLADNFRSTE 475

Query: 269  DILTVVDKVFSIPENAQ-GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            ++   ++ +F    + Q G  + S   ++  +    +     +   + S        +  
Sbjct: 476  NVDNFINLIFEQIMDRQVGEIDYSDAKLQFGAKYYPKDVNADVSVLLYSPKKPLSEGENL 535

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                  D      +       IA  I  M+   + I      R +   D  V+   R   
Sbjct: 536  PAEQVMD------ADVGQVEIIAQKIRQMVDDKEWIADGDGDRPVDYGDFAVISPTRGSQ 589

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
              ++ + +    DY I               I+ +++L   I +   D+  V +L+SP+ 
Sbjct: 590  ITMSSIFK----DYGIPAEITGAKSYLKTTEIQVMLSLLSIIDNPYQDIPLVAVLRSPIV 645

Query: 447  NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQHVI--------KYIHELIHIA 495
               E+ +  +   +      E+V ++ + + N   +K+   I        K +    ++A
Sbjct: 646  GLDENQLAYLRINQKTGNYYESVLKFYRDYPNAEPNKYAQAIYPLIDTLFKQLDHFKNVA 705

Query: 496  QFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            +          I               G +    L          E+N +  L   +  +
Sbjct: 706  KQDGLVALIWEIYNQTGYLDYVGGMPGGYQRQTNLHALYERAFDYEKNGFKGLFRFVLFI 765

Query: 555  EQ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            E+             + + N V +MT+H +KGL+ P+VFL D G Q      + +  +  
Sbjct: 766  ERMQARDDDLATAVPNTSDNMVHVMTIHGSKGLQFPIVFLNDIGKQFNQQDTMGRAVLND 825

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             L           +          ++   K +   E  R LYV +TRA  +L +    + 
Sbjct: 826  HLGIGISYLDTKTREIQEPLQRQAVLDVTKNAGLSEEMRKLYVALTRAEQRLFLVGKVDP 885

Query: 671  SN------------------------------EKKSNQRTWYDMVYDSFHNDERV----- 695
                                             ++++ +++ D +  +      V     
Sbjct: 886  GKGGSRKPTLDLQSIVESWQSQTEESAILLPMAERNSAKSYLDWIGPAISRHPDVVKDYG 945

Query: 696  --------KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK----- 742
                           S+   +               ++    + Q    +          
Sbjct: 946  DSRIVNLLADDPSRLSLEFYDNAKVAEGKKQAGRVAVDPRSWLDQQQPVESDSAVDRRQI 1005

Query: 743  -----LFSPIKNDINEPYILNPSTIDTKGKTNL--------------------------- 770
                    P +         + S I                                   
Sbjct: 1006 KAIMNFRYPHQAATRTTAYQSVSEIKRLFDDPDNVQLGNYSLIDSDQLIKPGRYTQPSLA 1065

Query: 771  ------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                  E+          G   H +LQ I    +  +   +        +    +     
Sbjct: 1066 TPKFISENGTHKPAPTEVGTATHLVLQQIDLHQQPTKATIVELIANLVKEGILEENVAGE 1125

Query: 825  L--LSITRLLENPMMTTAMS--CDSYSEVSVSGKINCPKK----------DIIISGRIDQ 870
            +    I R   + +    ++    +Y EV  S  +                I+I G ID 
Sbjct: 1126 INVDGILRFYASSLGAVVLANPETTYREVPFSLLMKAKNAFKDFDQDDDQPILIHGIIDG 1185

Query: 871  ISISQQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVS 928
               S+  + +F+YKT    P+  ++ +   +  Q+ +Y   L      + +    L  +S
Sbjct: 1186 YVESEAGVVLFDYKTDRLTPKTTVDTVHERYDGQIRLYATALDQIL-GRPVTKKYLYLLS 1244

Query: 929  EPKVFII 935
              ++  +
Sbjct: 1245 SDQLVPV 1251


>gi|322373657|ref|ZP_08048193.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150]
 gi|321278699|gb|EFX55768.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150]
          Length = 1217

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 146/1015 (14%), Positives = 324/1015 (31%), Gaps = 134/1015 (13%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             + +  D        +    +  + +    N +          A+    +E+    L + 
Sbjct: 243  KDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAIILLEGALANDQTDMEDLLKQLLTL 302

Query: 73   F-------LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-TYKMFKSTL 124
                    +T+    +     +  NK   +   +L++   +   +         +     
Sbjct: 303  SGGTGLTNMTRPKDEELKAYKEAYNKTKNEFVTQLREVDTQLTVLEVLTKHNDDILPLLE 362

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                     +  Y +AK +    +F D+      +L++      +        + +++DE
Sbjct: 363  LLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEENPE---VAASYRDRYHEVMVDE 419

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QD S  Q  ++  L           S+    F VGD KQSIY F  A+P+    + ++ 
Sbjct: 420  YQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLF 468

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                 +      +I L  +FRS +++L   + VFS   + +        T    +    Q
Sbjct: 469  L----DNPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQ 524

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                       ++ +       E+  +  +  P +  +S     +   I  +        
Sbjct: 525  KE-----PHPENETEVLIYNSDETGANPDEEGPDQPISSGEISLVIKEIIKLHEQG---- 575

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMA 423
                  ++ +DI +L   R               ++ I +V ++ +    + L +  ++ 
Sbjct: 576  ------VRFEDITLLAPTRNTYLD----LMASFEEHGIPLVPDEYKSSYLESLEVMIMLD 625

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----------YIQKF 473
              R I +  +D + V +L+SP+F+F+EDD+ +I  Q  E +   +          + +  
Sbjct: 626  TLRAINNPLNDYALVALLRSPMFHFNEDDLARIAVQADEGQFYDKLLVACTKTGLHPEVV 685

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEF 532
                 +K     + + +    +++ S +D    I   +       S     +    L   
Sbjct: 686  TQGLDAKLTLFTETLADWRDYSKWHSLYDLIWKIYNDRFYYDYVGSLPRAEQRQANLYAL 745

Query: 533  LNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
                   E+  +  L   I  +++                  N V +MT+H AKGLE   
Sbjct: 746  ALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVP-KNAVSLMTIHKAKGLEFKY 804

Query: 588  VFLVDTGSQVFSHKHIK-------------KMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            VF++    +   H                  +  +  L D     +             +
Sbjct: 805  VFVLQMNRKFIGHSKDGLSGKYIINREKGIGIKYLADLKDQINTNLPKLNVVLETLTFQE 864

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-------------------NEKK 675
              K  ++++  E  RLLYV MTRA  +L +    +                      ++ 
Sbjct: 865  NRKEERRASISEEMRLLYVAMTRAEQKLYLVGKGSKEKLTQQYGTDVENNRLPVVLRDQL 924

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI----AYEWSTHHPENTPLEREETIK 731
            S  + W   +  +F   +    +    +             + + +  + +   + E IK
Sbjct: 925  STYQDWIMALDTAFMRKDLKFAVSFVEAEELTPEAIGQVEVQATVNADDLSNNRQTEDIK 984

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTI---------------------------DT 764
            + +   +  +KL     + I+ P +  PS +                            T
Sbjct: 985  RALTVLESVEKLNQLYASAIDLPSVRTPSQLKTFYEPVMDTEGVDIMDKKEEVQPLETST 1044

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
              +       +       G   H+L+Q +        ++   +            + +  
Sbjct: 1045 TFELPDFGQKTKVTGAAVGSATHELMQRLILSDTVTLQDLTQAL--GRVSADDQVKARVQ 1102

Query: 825  LLSITRLLENPMMTTAMSCDS--YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFI 880
            L  +    +  +    ++       E   +   +    K++ ++ G ID   + +  I +
Sbjct: 1103 LEKLLGFFDTELGKLILANRDKLRREAPFAMLAEDPASKENFVVRGIIDGYLLLENRIVL 1162

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            F+YKT H        I   +  Q+S+Y K L  +Y    +   LI +    + ++
Sbjct: 1163 FDYKTDHFT--HPSEIKERYTGQMSLYAKALSQAYQVDKVDKYLILLGGKDLEVV 1215


>gi|73667245|ref|YP_303261.1| UvrD/REP helicase [Ehrlichia canis str. Jake]
 gi|72394386|gb|AAZ68663.1| UvrD/REP helicase [Ehrlichia canis str. Jake]
          Length = 854

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 194/641 (30%), Positives = 312/641 (48%), Gaps = 43/641 (6%)

Query: 39  METGNPTILKKAQTLQQASQTQCIEER--FSLLSSFF---LTQKFTPQKNIITQEINKKS 93
           +  G+    K +  L + +      +    +     F    + +  P  +IIT++     
Sbjct: 219 LSEGSIRDKKNSDKLVKWNALSQKYKLQKLNEYIKIFINLPSLEKKPISSIITKKTLANF 278

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
           P++++ +   Q+E +     F T K+ + T   + +AK     Y++ K+K   LD  D+I
Sbjct: 279 PEIEKIILNIQEEILNFIKMFYTKKIAERTTHIIEIAKCFIKLYQQDKQKLNYLDHNDII 338

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
               +LL   D   WI + +D +I+H+LIDE QD S+ QW +I  L  +FF G  T    
Sbjct: 339 NLALNLLTNIDYKDWILFHLDSKIDHLLIDESQDNSIKQWNIISHLCHEFFSGIGTTEES 398

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           RTLF VGD KQSIYSF  A P           +++T       I+    SFRST  IL +
Sbjct: 399 RTLFVVGDIKQSIYSFQNARPDYFEPMCHYFTQQSTQH----KILHFTKSFRSTPPILKL 454

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
           VD+VF+   +       +T  I H   R    G V++W  +  ++          ++  F
Sbjct: 455 VDRVFNNFRHEISF---NTEKIEHEIFRYNDSGYVEIWPIIDIKNHKN-------FSLDF 504

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           ++     ++ +LA  IA  I   I    I    + R I A D L+LVR R     I  + 
Sbjct: 505 ENQTYSDTSLLLASTIANKIHTWITNKRIL-LARNRPITAGDFLILVRHRTC--FIDHVI 561

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
             LK    I  +G D+F + D++ I+DL+ LG F+L  E+DL+ + +LKSP+F F+E+ I
Sbjct: 562 TALK-KLDIPTLGRDKFKIMDYIIIQDLVNLGEFLLLPENDLALIGLLKSPIFEFNEEQI 620

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
           F +   R++   ++E +Q        KF ++  Y+ +LI+I++  SP + +  I+   K 
Sbjct: 621 FDLAYNRNQQ-HLWEVLQ-------LKFSNISNYLKQLINISKLHSPLNLYHYIISEHKH 672

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             +FI R G    ++  EF+N  ++ E N+ +SLQ  I  ++   P IK   +   + V+
Sbjct: 673 --KFIKRLGQSSTEITGEFINLLIQFESNNLNSLQAFIYWIKNINPEIKSDINHTKDYVK 730

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           IMT+H AKG+++P+VFL DT +   S   +        + D+   P WI      N++  
Sbjct: 731 IMTIHNAKGMQAPIVFLSDTTTIPKSETQL--------VFDEEYTPFWI--RNDINDLCE 780

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           +L    K     EY RLLYV MTRA D+L I   S   N+ 
Sbjct: 781 NLKAKQKTQEYNEYLRLLYVAMTRAEDELYITGTSPVQNKS 821


>gi|187251691|ref|YP_001876173.1| UvrD/REP helicase [Elusimicrobium minutum Pei191]
 gi|186971851|gb|ACC98836.1| UvrD/REP helicase [Elusimicrobium minutum Pei191]
          Length = 1074

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 162/935 (17%), Positives = 317/935 (33%), Gaps = 86/935 (9%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
            +  +     F+ + I + +S           K  + L  AS             + F  +
Sbjct: 209  HAKVLSGVCFENAKIAEQMSCVFLPPGGKSRKIERALASASIILQ--------EAAFAFK 260

Query: 77   KFTPQKN----IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
            +   QK           + ++    ++  ++    +         +      A  +L   
Sbjct: 261  EGKFQKTENPGPEKLSSSDQAKGWDDENFETAVRIVDFARSLYPDRQMLIADA-FSLVSP 319

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               +  +  +   ++ F+DL++ T  LLK   +   +R  + ++   I IDE QDT  +Q
Sbjct: 320  FVNNARDTFEAQGLISFDDLLVKTRTLLKNNLI---VRSALKKQFEIIFIDEFQDTDPVQ 376

Query: 193  WEVIRSLTEDFFVGKNTHSS----PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
             E++  L E+        +     P  LF VGD KQSIY F GA+         +  K  
Sbjct: 377  GELLLFLAEEEKSAAKVWNEIKLAPGKLFVVGDPKQSIYRFRGADITAYQLFTELILK-- 434

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVD-KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                Q   I  L  +FRS A I+  V+   F + E   G             +   +   
Sbjct: 435  ----QGGMICYLQTNFRSDAQIIDFVNCAGFKLIEERPGFQAKYVPINAKDGAPCDK--- 487

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                           +  ++   S       +      A   A  I+             
Sbjct: 488  ---------------DAVKDVIISSEQPQSADDYRHNQAEFTAKWIAE---NAGKLKLSN 529

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              V+Q KDI VL+R      + T   +     Y +     +         I D++ L   
Sbjct: 530  GSVLQYKDIAVLMRTSNAFNIFTEALK----RYGVKYTVEEDKNFYTAQEITDILNLLSL 585

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D  +   +L+SP   F++D+I++I  Q+    +      K    G  +     K 
Sbjct: 586  LDNPYDKNALAGVLRSPFGGFNDDEIYQIFKQKFTDIS-----AKKLPKGFERLGGFYKT 640

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            ++ L       S       IL +    +   ++  G + I  L +F      ++  + +S
Sbjct: 641  LNTLKGFVGRISTGALVEKILSSTMFAELSQLAYNGEQTISNLQKFAALAAGDQNENANS 700

Query: 547  LQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            L + ++       +              + V +MT+H +KGLE PVVFL D   Q    +
Sbjct: 701  LGQFLANSKDLARQARGEGESPLADEFLSAVSVMTIHKSKGLEFPVVFLADMFRQESVKQ 760

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            +         ++     P         +  ++ L       ++ E  R+LYV +TRA ++
Sbjct: 761  NKYSYSWFYDMHGLRAGPY-------ADANLAFLEVQQLWHSKSEEARILYVALTRAKEK 813

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            L I  ++  + +  +       +  +     E            +    A      +  N
Sbjct: 814  LFILGNNTETKKTPARHLRNAGLWPELVTVKELPNDKLTHPLQLEYFPYAEPDQFIYKIN 873

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
               E    +K   +      K     +    E   ++PS+++   K       S +    
Sbjct: 874  FTPEDGGVLKNAGEWFNRWAKRSEIYEKIKEEALFISPSSLN---KHEAVFAGSSDNAAL 930

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
             G + HK+L+          +    S  +   +         ++     ++ N  ++   
Sbjct: 931  LGTLCHKMLENYDFKTVITPEQTAASAASLQIEDND------IIKEAAEIINNFTVSEVC 984

Query: 842  SC-DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
                S   ++        ++  IISG +D I   +  IF+ +YKT           P  +
Sbjct: 985  KKLASMRVLAREMPFTYFEEGKIISGTVDVIVEQEGEIFVLDYKTDKTPD------PSKY 1038

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              QL  Y++ +K    N+ +   L+++   +++II
Sbjct: 1039 ALQLGAYKRAVKKIMGNEGVKSGLVFLRTSQLYII 1073


>gi|290580138|ref|YP_003484530.1| putative exonuclease [Streptococcus mutans NN2025]
 gi|254997037|dbj|BAH87638.1| putative exonuclease [Streptococcus mutans NN2025]
          Length = 1212

 Score =  341 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 168/1003 (16%), Positives = 323/1003 (32%), Gaps = 132/1003 (13%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL--SSFFLTQKFT 79
             L    V+D+  Y       G PT     + L+   Q Q     F  L            
Sbjct: 251  ALALRDVTDLEDYKQ-VTAKGTPTA-AYQRHLKMIEQLQDWVLHFDNLYGRDGLGKLAND 308

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT----LAKYLNA 135
                I +      +       +        ++     +K    +L  L      A   + 
Sbjct: 309  IATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFALDFSK 368

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y +AK +    +F D+      +L++ D    IR     + + +++DE QD +  Q  +
Sbjct: 369  QYLQAKMQENAFEFSDIAHFAIQILEENDA---IRQLYIDKYHEVMVDEYQDNNHTQERM 425

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +  L           S+ R  F VGD KQSIY F  A+P+   ++ +  Q+   +     
Sbjct: 426  LELL-----------SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEH----G 470

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             +I L  +FRS +++L   + VF+   +     +  D T  +   SS           + 
Sbjct: 471  KLILLKENFRSQSEVLDATNSVFTHLMDETVGEILYDDTHQLVAGSSAQKIPYPQNETQV 530

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
            ++     Q N                  +    + +A  I  +   +          +Q 
Sbjct: 531  LIYDTKDQQNQDLAV------EDDSNQISLGEVKLVAKEIIRLHNEE---------KVQF 575

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +LV  R              +DY I  V           + +  ++   R I +  
Sbjct: 576  EDITLLVSSRTR----NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPL 631

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQR---HETETVYEYIQKFANCGIS---------- 479
            +D + V +L+SP+F F EDD+ ++  Q       + +YE ++   N              
Sbjct: 632  NDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALS 691

Query: 480  -KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTL 537
             K     +        +   S +D    I   K       S     +    L        
Sbjct: 692  AKLDAFFETFLSWRKFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRAD 751

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDT 593
              E+  +  L   I  +++                 N V +MT+H +KGLE   VF+++ 
Sbjct: 752  NFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNI 811

Query: 594  GSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIKHLKKS 642
              +         + +                      + I +            + L+ +
Sbjct: 812  DKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPIVKVSMDTLPYQLNKRELRLA 871

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS-------------------NQRTWYD 683
            T  E  RLLYV MTR+  +L +    +                            + W  
Sbjct: 872  TLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLL 931

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEW----IAYEWSTHHPENTPLEREETIKQLMDEQKI 739
             +  ++  DE   K       +  E     +  E +          + + I + +D  + 
Sbjct: 932  AIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDIARALDMLEA 991

Query: 740  PKKLFSPIKNDINEPYILNPSTID----------------------TKGKTNLESLLSDN 777
             +KL    K  I+ P +  PS I                        K +    S  +  
Sbjct: 992  VEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAGQ 1051

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
                 G  +H+L+Q +    +   ++ +T+    + +    K  +  +  I    +   +
Sbjct: 1052 DPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQ--VDKILHFFQTSQL 1109

Query: 838  TTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
               +  ++   Y E   +         +D ++ G ID   +    I +F+YKT      +
Sbjct: 1110 GKLIQANADKVYREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQ 1169

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
               I   +  Q+++Y + L  SY  + +   LI +   K+ ++
Sbjct: 1170 --AIKERYQGQMTLYAQALSQSYNIQQVDSYLILLGGEKLEVV 1210


>gi|15671986|ref|NP_266160.1| ATP-dependent exonuclease subunit a [Lactococcus lactis subsp. lactis
            Il1403]
 gi|81538647|sp|Q9CJI9|ADDA_LACLA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|12722839|gb|AAK04102.1|AE006239_4 subunit A of ATP-dependent exonuclease [Lactococcus lactis subsp.
            lactis Il1403]
          Length = 1203

 Score =  341 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 172/1043 (16%), Positives = 315/1043 (30%), Gaps = 152/1043 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----------ILKKAQTLQ 54
            G    +S   +  D        +    + +  S+  G              IL     L 
Sbjct: 207  GFETYKSLIDLSADFSADIKENLLIFFELLETSLTNGVVAKKGAGRDKANLILDNKNELL 266

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112
            +A  T+       L  S     +    K+ I   + K     K+ L  S+ +  +IR   
Sbjct: 267  EAITTKDFATFTELFLSIDTDIRVGSSKDEILSALKKDFSVQKQDLVGSKSKPGEIRKFV 326

Query: 113  ---------RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                          + F+               Y E KK     ++ D+     ++L++ 
Sbjct: 327  DKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEEN 386

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                 IR  + +  + I+IDE QDTS  Q  ++  L           S+   LF VGD K
Sbjct: 387  PD---IRETLREHYDEIMIDEYQDTSHTQERMLELL-----------SNGHNLFMVGDIK 432

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            QSIY F  A+P   L + +   K          +I L  +FRS  ++LT  + +F    +
Sbjct: 433  QSIYGFRLADPGLFLEKYKDYAK----TENPNQLIRLKENFRSRGEVLTFTNDIFKHLMD 488

Query: 284  AQGLSEDSTTTIRHRSSRIGQ---VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             +                I           + +++   ++  + + +          +  
Sbjct: 489  EKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETD--------ESEVR 540

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
             +    +  A  I  +I             ++ KDI +LVR + +   I  +       Y
Sbjct: 541  ISDGEIKGAAQEIKKLIEAG----------VEPKDIAILVRSKSNNNKIEDIL----LSY 586

Query: 401  KISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I VV    R      + +  ++ + R I +   DLS V ML+SPLF F+ED++ +I TQ
Sbjct: 587  DIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISTQ 646

Query: 460  RHETETVYEY-----------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                   ++             +       +K +   K   E   +    + HD    I 
Sbjct: 647  GSHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFYKKFTEWRKLVNQVAIHDLLWKIY 706

Query: 509  GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIKR 563
                      + + G      L          E + Y  L + +      +EQ       
Sbjct: 707  TETYYFDYVGALKNGEIRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASV 766

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  + VR+MT H +KGLE   VFL++  S+       + + +         +   + 
Sbjct: 767  NIKLPQSAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKENVILSRENGLGMKLIADLK 826

Query: 624  QS------------KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                          K             +++   E  R+LYV  TRA  +L +      +
Sbjct: 827  DEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKET 886

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA-------------------- 711
            ++K          +      D+     +           A                    
Sbjct: 887  DKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPIKLNVYTKEELEAEKL 946

Query: 712  -----YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID--- 763
                  ++     E+   +        + + +       P +       I  PS +    
Sbjct: 947  EFTSQPDFKKLVEESEKFDNIMAHSDEIQKAQKIMNYEYPHQAATELSSIQTPSQVKKRS 1006

Query: 764  ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
                               K     +           G   H  +Q         + +  
Sbjct: 1007 YEKQLQVGEIQPKSEFTRVKKLDFSDFGPKKVTAAEIGSATHSFMQYADFS----QADLF 1062

Query: 806  TSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKK 860
            +   T +   +  K    + +  I  L +             +  E   S        K+
Sbjct: 1063 SFQATLDEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFAKE 1122

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
              I+ G  D        I +F+YKT        I  I   +  Q+++Y + LK +Y    
Sbjct: 1123 QYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQ 1182

Query: 920  LVCLLIYVSEPKVFIIPQNKLNK 942
            +   LI +  P+   +   KL+ 
Sbjct: 1183 VDKYLILLGGPQQVFV--EKLDD 1203


>gi|24379891|ref|NP_721846.1| putative exonuclease RexA [Streptococcus mutans UA159]
 gi|81588281|sp|Q8DT76|ADDA_STRMU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|24377868|gb|AAN59152.1|AE014982_1 putative exonuclease RexA [Streptococcus mutans UA159]
          Length = 1212

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 167/1003 (16%), Positives = 323/1003 (32%), Gaps = 132/1003 (13%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL--SSFFLTQKFT 79
             L    V+D+  Y       G PT     + L+   Q Q     F  L            
Sbjct: 251  ALALRDVTDLEDYKQ-VTAKGTPTA-AYQRHLKMIEQLQDWVLHFDSLYGRDGLGKLAND 308

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNA 135
                I +      +       +        ++     +K    +L  L + +      + 
Sbjct: 309  IATLIPSGNDVTVAGVKYPVFRSLHSRLRGLKHLETIFKYQDQSLPLLQVLQSFTLDFSK 368

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y +AK +    +F D+      +L++ D    IR     + + +++DE QD +  Q  +
Sbjct: 369  QYLQAKMQENAFEFSDIAHFAIQILEENDA---IRQLYIDKYHEVMVDEYQDNNHTQERM 425

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +  L           S+ R  F VGD KQSIY F  A+P+   ++ +  Q+   +     
Sbjct: 426  LELL-----------SNGRNRFMVGDIKQSIYRFRQADPQIFNQKFKDFQEHPEH----G 470

Query: 256  SIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             +I L  +FRS +++L   + VF+    E    +  D T  +   SS           + 
Sbjct: 471  KLILLKENFRSQSEVLDATNSVFTHLMDEAVGEILYDDTHQLVAGSSAQKIPYPQNETQV 530

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
            ++     Q N                  +    + +A  I  +   +          +Q 
Sbjct: 531  LIYDTKDQQNQDLAV------EDDSNQISLGEVKLVAKEIIRLHNEE---------KVQF 575

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +LV  R              +DY I  V           + +  ++   R I +  
Sbjct: 576  EDITLLVSSRTR----NDGILQTFDDYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPL 631

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQR---HETETVYEYIQKFANCGIS---------- 479
            +D + V +L+SP+F F EDD+ ++  Q       + +YE ++   N              
Sbjct: 632  NDYALVALLRSPMFAFDEDDLARLALQNLPDQHKQNLYEKMENARNGQGQQVQLITEALS 691

Query: 480  -KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTL 537
             K     +        +   S +D    I   K       S     +    L        
Sbjct: 692  AKLDAFFETFLSWREFSLLNSLYDLIWKIYNDKFYYDYVGSLPKSEQRQANLYALALRAD 751

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDT 593
              E+  +  L   I  +++                 N V +MT+H +KGLE   VF+++ 
Sbjct: 752  NFEKTGFKGLSRFIRMIDKILENQNDLADVEVALPKNAVTLMTIHKSKGLEFKYVFILNI 811

Query: 594  GSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIKHLKKS 642
              +         + +                      +   +            + L+ +
Sbjct: 812  DKKFSIQDMTSPLILSRQNGVGIKYIADMKEELEEKLLPTVKVSMDTLPYQLNKRELRLA 871

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS-------------------NQRTWYD 683
            T  E  RLLYV MTR+  +L +    +                            + W  
Sbjct: 872  TLSEQMRLLYVAMTRSEKKLYLVGKGSQEKLGDQYDGKSENNHLPVADREHYLTFQDWLL 931

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEW----IAYEWSTHHPENTPLEREETIKQLMDEQKI 739
             +  ++  DE   K       +  E     +  E +          + + I + +D  + 
Sbjct: 932  AIEAAYAADELHFKTSFITDEDLTEDKMGSLEAEQAYDADNLKDNRQSDDITRALDMLEA 991

Query: 740  PKKLFSPIKNDINEPYILNPSTID----------------------TKGKTNLESLLSDN 777
             +KL    K  I+ P +  PS I                        K +    S  +  
Sbjct: 992  VEKLNQHYKAAIHLPTVRTPSQIKKFYEPVMETEGVEVMQTSYQTKPKFELPQFSKKAKQ 1051

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
                 G  +H+L+Q +    +   ++ +T+    + +    K  +  +  I    +   +
Sbjct: 1052 DPTALGSSVHELMQRLHLSEQVSLEDILTALAELSVEENVKKAIQ--VDKILHFFQTSQL 1109

Query: 838  TTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
               +  ++   Y E   +         +D ++ G ID   +    I +F+YKT      +
Sbjct: 1110 GKLIQANADKVYREAPFAMLQADPASGEDYVVRGIIDGYILFDNRIVLFDYKTDKFTNSQ 1169

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
               I   +  Q+++Y + L  SY  + +   LI +   K+ ++
Sbjct: 1170 --AIKERYRGQMTLYAQALSQSYNIQQVDSYLILLGGEKLEVV 1210


>gi|56419217|ref|YP_146535.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus
            HTA426]
 gi|81558057|sp|Q5L263|ADDA_GEOKA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|56379059|dbj|BAD74967.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus
            HTA426]
          Length = 1242

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 153/1040 (14%), Positives = 328/1040 (31%), Gaps = 144/1040 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
            I +            I + + L+ E G P                L+    +    E   
Sbjct: 226  IAQHAAMELAAARRLIRRALELAEEPGGPRPYAERLREDRDMITDLETRL-SGPWAELHR 284

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKS- 122
             L +    +    +     + +  ++  L+++    ++  +D    +        M +  
Sbjct: 285  ALKALSFGRLPACRGKDYDERLIDEAKSLRDQAKKKVEALRDNVFSLDPSVWLRHMREMK 344

Query: 123  --TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDVSAW----IRYKID 174
                    L +     ++ AK++  ++DF DL      +L+    +   W       +  
Sbjct: 345  PIVETIANLVRRFAVMFQAAKREKGIVDFSDLEHYCLHILRRRDPETGEWQPSPAALEYQ 404

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             + + +L+DE QDT+L+Q  +++ +       K        LF VGD KQSIY F  AEP
Sbjct: 405  AQFDEVLVDEYQDTNLVQEAILQLV-------KKGSERTGNLFMVGDVKQSIYRFRLAEP 457

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292
               L + +         G K   I+L  +FRS  ++L   + +F+         +  D  
Sbjct: 458  MLFLDKYKRFTADGEEGGMK---IDLASNFRSRREVLDGTNFLFAQLMGETVGEMVYDEA 514

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              +++ +                +  +     +Q +     +   +  +A + AR +A  
Sbjct: 515  AQLKYGADYPEG---------EDAAPEVMIINRQRAAEEDEEEAAEWEAAELEARLMAKK 565

Query: 353  ISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I  ++       +   G+ R    +DI++LVR   + P +    +       I    +  
Sbjct: 566  IKEIVSAPFYVYDRSSGQPRRAMYRDIVILVRSMTNAPQMIEQLQA----QGIPAAADLS 621

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE- 468
                    I  +++L + I +   D+    +L+SPLF F E+++  I     +       
Sbjct: 622  SGYFQATEISIMLSLLKVIDNPHQDIPLAAVLRSPLFRFDENELAMIRLADPKGTFYEAL 681

Query: 469  -------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520
                      K       K    ++ +     +A+  S  D    +    +      +  
Sbjct: 682  CSFRQKPAETKEEANAQRKAAAFLERLEGWRTMARRRSLADLIWQLYRDTQFYDFVGALP 741

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575
             G +    L    +   + E  S+  L   +  +E+           R      + VRIM
Sbjct: 742  GGRQRQANLRALYDRARQYESTSFRGLFRFLRFIERLQERGDDLGAARPLGEQEDVVRIM 801

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H++KGLE P+VFL        +        +   L           +       +  +
Sbjct: 802  TIHSSKGLEFPIVFLAGLARPFHTRDLHHPYLLDKELGFAARFVHPRLRISYPTLPLLAI 861

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KS 676
                +     E  R+LYV +TRA ++L +    N + ++                   ++
Sbjct: 862  QTKKRLELLAEEMRILYVALTRAKEKLYLLASVNDAAKEIEKWKSAASERGWLLPDDVRA 921

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD- 735
            + R++ D +  +         +  T +  +       W         L   E  ++ MD 
Sbjct: 922  SARSYLDWIGRALIRHRDGGALAGTKAPEEVASHPSVWRVAIVPAADLRGAEAAREEMDG 981

Query: 736  ------------------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                              ++++ ++L      +         S  + K +  L    +D 
Sbjct: 982  GVLLALEQGRPVPVEGGWQKEVKRRLLWRYSYEKETAVRAKQSVSELKEQRALFGEQADE 1041

Query: 778  ----------------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
                                      +G  +H +++ +            +       K 
Sbjct: 1042 WRPRQGTAPVFSRPRFMQEKTLTPAEKGTALHVVMRHLDLQAPLDESWIRSQIVRLVEKE 1101

Query: 816  WPAKEYKNLLL--SITRLLENPMMTTAMSCD-SYSEVSVSGKINCP----------KKDI 862
              + E    +   +I       +     +    + EV  S  +              + +
Sbjct: 1102 LLSAEQAEAVDPAAIAAFFTADLGRRLCAAREVHREVPFSLGLKAAELYGGEGTESGRRV 1161

Query: 863  IISGRIDQISISQQNIFIFEYKTH---HHVPQEIEHIPY----THIAQLSIYEKILKDSY 915
            ++ G ID +   +    + +YKT    H    + E         +  Q+ +Y + ++  +
Sbjct: 1162 LVQGVIDCVFADECGYVMIDYKTDEVVHRFAGQKEEAARFLLGRYGTQMRLYRRAIEQIW 1221

Query: 916  PNKSLVCLLIYVSEPKVFII 935
                  C L       V  +
Sbjct: 1222 RAPVAECYLYSFDGGFVVAV 1241


>gi|57239354|ref|YP_180490.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58579320|ref|YP_197532.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
 gi|57161433|emb|CAH58357.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417946|emb|CAI27150.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 857

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 188/647 (29%), Positives = 309/647 (47%), Gaps = 43/647 (6%)

Query: 34  YVSLSMETGNPTILKKAQTLQQASQTQCIE--ERFSLLSSFFLTQKFTPQKNI---ITQE 88
           ++  ++  G+    K +  L             + +  +  F+      +K+I   IT++
Sbjct: 214 FLIKALSKGSTRDQKISNKLTAWMNLSEKYKIAKLNEYTKIFINSTSLEKKSISSIITKK 273

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
                P +++ +   Q+E ++  + F   K+ + T+    +AK     Y++ K++   LD
Sbjct: 274 TLNDFPQIEKIIIDIQEEVLEFTNTFYANKIAERTVHLTEIAKCFTKLYQQNKQRLNYLD 333

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            +D+I     LL       WI + +D +I+H+L+DE QD S+ QW++I  L +DFF G  
Sbjct: 334 HDDVINLALKLLINPHYKDWILFHLDSKIDHVLVDESQDNSIKQWQIISELCQDFFTGIG 393

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
           T    +TLF VGD KQSIYSF  A P           +++        I+ L  SFRSTA
Sbjct: 394 TTEETKTLFIVGDIKQSIYSFQNARPDYFKPMCNYFAQKSNQY----KILYLKQSFRSTA 449

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL +VDK+F+        +   T  I H   R    G +++W    ++++      + +
Sbjct: 450 PILKLVDKIFNNFRQEISFT---TEAIHHEIFRKHDPGYLEIWPIFHTENN------KYN 500

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
           +    D     ++  +LA  IA  I   I    I    K+R I A DIL+LVR R  T  
Sbjct: 501 FLENTDHKITPNTNLLLASTIANKIHTWIKNQRILP-AKQRTISAGDILILVRHR--TSF 557

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
           I  +   LK    I  +  D+F + D + I+DL+ LG F+L  E+DL+   +LKSP+F F
Sbjct: 558 IDHMITELK-KLNIPTLERDKFKVMDSIIIQDLVNLGEFLLLPENDLALAGLLKSPIFEF 616

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +E+ IF +   R     ++E +Q        KF ++  Y+ +LI+I+Q  +P D +  I+
Sbjct: 617 TEEQIFNLAYNR-NNLHLWEVLQ-------LKFSYISDYLKQLINISQTHNPLDTYNYII 668

Query: 509 GAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
              K   +FI R G     +++ EF+N  ++ E +  +SLQ  I  ++   P IK   + 
Sbjct: 669 SQHKH--KFIKRLGQSNIEEIIGEFINLLIKFELDHINSLQAFIHWIKNTNPEIKSDINH 726

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             N ++IMT+H AKG++SP+VFL DT +   +         +  + D    P W      
Sbjct: 727 TKNYIKIMTIHNAKGMQSPIVFLTDTTTIPKN--------DLQLIFDTENTPFWC--RND 776

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            ++    L    K +   EY RLLYV MTRA D+L I       ++ 
Sbjct: 777 THDFCEKLKTQQKINEYNEYLRLLYVAMTRAEDELYITGTPPIQSKS 823


>gi|209559149|ref|YP_002285621.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
            NZ131]
 gi|251764566|sp|B5XKR4|ADDA_STRPZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|209540350|gb|ACI60926.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes
            NZ131]
          Length = 1222

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 159/1025 (15%), Positives = 325/1025 (31%), Gaps = 139/1025 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244  RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
              F  L      +    +       +     D+          K    +  + R      
Sbjct: 304  RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360  MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEEN---TDIRQSY 416

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417  QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 466  PQIFNQKFRDYQKKTEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520  DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-IL 412
              +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 575  IKLHND---------KGVPFEDITLLVSSRTR----NDIISHTFNQYGIPIVTDGGQQNY 621

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
               + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622  LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470  IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            IQ+             +  + K    +K +      A+  S +D        +       
Sbjct: 682  IQRAVIGRGAYPELIHDTLLGKLNVFLKTLKSWRRYAKLGSLYDLILENFHERFYFDFVA 741

Query: 519  SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
            S+    +    L        + E++ Y  L   I      LE          +     V 
Sbjct: 742  SQAKAEQAQANLYALALRANQFEKSGYKGLYRFIKMIDKVLETQNDLADVEVATPKQAVN 801

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWI 622
            +MT+H +KGL+ P VF+++   +       K   +                      +  
Sbjct: 802  LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNS 861

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--- 679
             +            + L+ +T  E  RLLYV MTRA  ++     ++ S  ++       
Sbjct: 862  VKVSMETLPYQLNKQELRLATLSEEMRLLYVAMTRAEKKVYFIGKASKSKSQEITDPKKL 921

Query: 680  ----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HP 719
                             W   + D F  ++    ++     +  +       T       
Sbjct: 922  GKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPD 981

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768
            +     + ETI + +D  +   +L +  +  I+ P +  PS +    +            
Sbjct: 982  DLKDNRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKATYEPLLEPIGVDIIE 1041

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                          S  +  +  + G  +H+L+QV+       ++  + +   +      
Sbjct: 1042 KSSRSLSDFTLPHFSKKAKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--RGIDSNE 1099

Query: 818  AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGK--INCPKKDIIISGRIDQIS 872
              +    L  I     +  +           Y E   +        +++ ++ G ID   
Sbjct: 1100 EVKTALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYF 1159

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP-- 930
            +   +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     
Sbjct: 1160 LFDDHIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKP 1217

Query: 931  KVFII 935
            ++  +
Sbjct: 1218 EIVEV 1222


>gi|319947223|ref|ZP_08021457.1| exonuclease RexA [Streptococcus australis ATCC 700641]
 gi|319747271|gb|EFV99530.1| exonuclease RexA [Streptococcus australis ATCC 700641]
          Length = 1227

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 164/1023 (16%), Positives = 340/1023 (33%), Gaps = 132/1023 (12%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            +L++  + + + L+ L  F    + N+  + S       +      +   ++    E  F
Sbjct: 235  ALDQLAQEVKEQLFELESFFTFHLANEGQAFSGAKYQENVTAIQDLIAGLNEQSSQEAIF 294

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ-DEFIKIRDRFNTY-------K 118
             +L    L  + +  +++      +   +L       + +    +R   + +       +
Sbjct: 295  EVLERVVLISRASGGRSLTITTRKEDLKELATAFNDERKERIEALRAAASQHYQLTYQFR 354

Query: 119  MFKSTLASLTLAKYLNAH----YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                 L  L L +         Y E KK+    +F D+      +L++      IR    
Sbjct: 355  FKDEPLPLLVLLRDFVQAFSIAYLERKKQENAFEFGDISHFAIQILEEFPH---IRKLYQ 411

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +  + +++DE QDT+  Q  ++  L           S+ R  F VGD KQSIY F  A+P
Sbjct: 412  ERYHEVMVDEYQDTNHTQERMLELL-----------SNGRNRFMVGDIKQSIYRFRQADP 460

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
            +    + +  Q+     G    +I L  +FRS  ++L   + VF    + +        +
Sbjct: 461  QIFNDKFKAYQEE----GADGKLILLKENFRSHVEVLEATNHVFERLMDEEVGEILYDQS 516

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
             R  +   G     +      ++       Q+   T   +    +S +S     +   I 
Sbjct: 517  HRLIA---GNPEKKEPTPAYETEFLLYDGSQEVDETGEDEEQEGDSLSSGEVLFVIKEII 573

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILT 413
             +   +          +  KD+ +L   R     +          Y+I +V +       
Sbjct: 574  RLHNEE---------GVPFKDMTLLTASRTRNDKVLSAFEA----YQIPIVADGGEENYL 620

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
              + +  L+   R I +   D   V ++KS +F F ED + ++  QR E +      +K 
Sbjct: 621  QSVEVMVLLDTLRTINNPLQDYPLVALMKSAMFEFDEDQLARLALQRGEGKKAENLYEKL 680

Query: 474  ANC--------------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
             +                  K    ++ +      AQ  S +D    I   +       +
Sbjct: 681  QHALDQTGSAPQLIDASLRDKLTRFMETLDAWRDYAQTHSLYDLLWKIYQDRHYYDYVGA 740

Query: 520  -RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRI 574
               G +    L          E +S+  L   IS +++           A +   + V++
Sbjct: 741  LPNGAQRQANLYALTLRANDFESSSFKGLPRFISMIDKILENQHDLANVAQAVPKDAVQL 800

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            MT+H +KGLE P VF+++T  +    +      I             +P    +  +   
Sbjct: 801  MTIHKSKGLEFPYVFILNTDKKFVGKELSTNAVISRKNGVGIKYIANLPVESDQEGLPEA 860

Query: 635  LI------------KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---- 678
            +             + ++ +   E  RLLYV MTRA  +L +         ++       
Sbjct: 861  VRLVIETLPYQRNVEEIRLAALSEQMRLLYVAMTRAERKLYLVGKGRQDKLEEKKWGASV 920

Query: 679  ------------RTWYDMVY-----DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
                          + D +Y      +  +     +      +  ++    E  T  P +
Sbjct: 921  NGRLSPALRKEINCFQDWLYAIQAVFAQQHLAYQTRFVTDQDLTPEQIGHLEVKTSLPVD 980

Query: 722  T--PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------- 768
                  + E I++ +D  +   +L +  +  I  P +  PS I    +            
Sbjct: 981  DLKDNRQSEEIRRALDVLESVDRLNTQYQAAIQLPSVRTPSQIKKFYEPIQDIEGVDLME 1040

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                                     G  +H+L+Q I        ++        NA    
Sbjct: 1041 KGDLALPSFEFPKFGKEEAVTGATVGSALHELMQRIPLTTIPTMESLAMVLQEVNASPAV 1100

Query: 818  AKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISI 873
             +     L  +    +  +    +  +   + E   +         +D ++ G +D   +
Sbjct: 1101 KERID--LKKVLAFFQTDLGQLLLKEADKVHREAPFAMLKTDPTSGQDFVVRGILDGYLL 1158

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
             +  I +F+YKT  +  +  + +   + AQL +Y + L+ SY    L   LI +   ++ 
Sbjct: 1159 LEDRILLFDYKTDRY--RNPQDLLDRYHAQLELYAEALRRSYGVDRLESYLILLGGEQLQ 1216

Query: 934  IIP 936
            ++ 
Sbjct: 1217 VVS 1219


>gi|327461179|gb|EGF07512.1| exonuclease RexA [Streptococcus sanguinis SK1057]
          Length = 1224

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 157/1033 (15%), Positives = 329/1033 (31%), Gaps = 138/1033 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60
             + F       +  I   LW L  F  + +       +       +      L   ++  
Sbjct: 228  HSDFAAERERIFGQIKSALWELEAFFSAHLEHEGREFAGAKYQENVQDALTVLAGLNELS 287

Query: 61   CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
             IEE   +L                  + +     K  + ++ N+    + E+L+    +
Sbjct: 288  PIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQ 347

Query: 107  FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              ++     +  +                  Y E KK     +F D+     ++L+    
Sbjct: 348  LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPE 407

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +R    +  + +++DE QDT+  Q  ++  L           S  +  F VGD KQS
Sbjct: 408  ---VRRFYQERYHEVMVDEYQDTNHTQECMLDLL-----------SRGQNRFMVGDIKQS 453

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  A+P+    + +  Q+       +  +I L  +FRS  ++L   + VF    + +
Sbjct: 454  IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                D   T    +    +             + +     + S  S  +   +    ++ 
Sbjct: 510  VGEIDYNETHYLVAGNPAKREP-------NPANCASFLIYEGSKESPEEEGDEGLPQAVS 562

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A  +   I  +I          +  +  KDI +L   R        L       ++I +V
Sbjct: 563  AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLV 612

Query: 406  GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +D        + +  ++   R I +  +D +   +LKSP+F+F ED++ ++  Q  +  
Sbjct: 613  PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672

Query: 465  TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +     +K                     K QH  + +      ++  S +D    I   
Sbjct: 673  SQENLYEKLLNALEGRGLNPTLVTQKLQKKLQHFHETLQSWRTYSKTHSLYDLIWKIYQD 732

Query: 511  KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
            +           G +    L          E++S+  L   I  +++             
Sbjct: 733  RFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPV 792

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615
            +A  + VR+MT+H +KGLE   VFL++             + +  +              
Sbjct: 793  AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTNGVGIKYVADVSVS 852

Query: 616  --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671
                      +           +  L+ ++  E  RLLYV MTRA  +L +    +    
Sbjct: 853  VEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEVL 912

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                               + SN + W   +   F ++    + +             + 
Sbjct: 913  DKRQWGKSQQGRLSVSLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTVEEIGQI 972

Query: 715  ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762
            +        +     + + I++ +D  +   +L S  ++ I  P +  PS I        
Sbjct: 973  NEPVLFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032

Query: 763  ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                             +  +       +       G  +H+L+Q I           + 
Sbjct: 1033 DTDGLDIMDERAAFRPQSSFELPDFGRKATVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862
                   +   A + +  L  I    E  +    +  S     E   +   + +   ++ 
Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDASGQEF 1150

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ++ G +D   + +  I +F+YKT  +       +   +  QL +Y + L  SY    +  
Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELIARYRGQLDLYAQALSRSYGISQIEK 1208

Query: 923  LLIYVSEPKVFII 935
             LI +   ++ ++
Sbjct: 1209 YLILLGGEQLQVV 1221


>gi|315221764|ref|ZP_07863678.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211]
 gi|315189150|gb|EFU22851.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211]
          Length = 1237

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 166/1036 (16%), Positives = 330/1036 (31%), Gaps = 142/1036 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +  F     +    I + L+ L  F    + N+            +      L       
Sbjct: 239  RADFQEEKAQLLAQIKEALYDLEDFFHYHLANEAKEFPKAKYLENVQSVLDCLASLQGQS 298

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK-----------EKLKKSQDEFIK 109
              E   + L       + +  K +      ++  ++            + L+   D+F +
Sbjct: 299  SEEAYVTALDRIVEISRASNGKALTNSGRKEELKEIINTYNEKRKEKIQVLRDLADQFYR 358

Query: 110  IRDRFNTYKMF-KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               +   ++   +  L      K     Y   KK+    +F D+      +L++      
Sbjct: 359  FEFQVTYHEEAKEILLVLQRFMKAFVESYLNRKKEENAFEFADVSHFAIQILEEFPD--- 415

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +R+    + + +++DE QDT+  Q  ++  L           S+    F VGD KQSIY 
Sbjct: 416  VRHFYRNKYHEVMVDEYQDTNHTQERMLELL-----------SNGHNRFMVGDIKQSIYR 464

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F  A+P+    + ++ Q       Q+  +I L  +FRS  ++L   + VF    + +   
Sbjct: 465  FRQADPQIFNDKFKLYQDD----SQQGKLIVLKENFRSHVEVLEATNDVFKRLMDEEVGE 520

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             D   T    +    +      ++     +D       E       S+     A      
Sbjct: 521  IDYNETHYLVAGNPDKKEPNPQYQTEFLIYDGTLETNNEENDKDVSSVSAGEVA-----L 575

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +   I  +   +          +Q +DI +L   R        +       Y I VV + 
Sbjct: 576  VIKEIIRLHNEE---------NVQFEDITLLTASRT----RNDMILAEFAKYGIPVVSDG 622

Query: 409  R-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                    + +  ++   R I +  +D + V +LKSP+F F+ED++ ++  Q+  TE  +
Sbjct: 623  GEDNYLQSVEVMVMLDTLRTINNPLNDYALVALLKSPMFTFTEDELARLALQKKVTEANH 682

Query: 468  -------------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                               ++ +      + K Q   + + +    A+  S +D    I 
Sbjct: 683  VVHQENLYEKLKNALSGHGQHPELITPPILKKIQQFQEILLDWREFAKINSLYDLLWKIY 742

Query: 509  GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKR 563
              +       +   G      L          E+ S+  L   I      LE        
Sbjct: 743  QDRFYYDYVGALPNGAGRQANLYALTLRANDYEKMSFKGLSRFIGMIDKILETQNDLASV 802

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-------- 615
              +A  + VR+MTVH +KGLE   VFL++T            + +               
Sbjct: 803  VVAAPKHAVRLMTVHKSKGLEFKYVFLLNTDKAFNRKDSSSALILSRQNGVGIKYVADVA 862

Query: 616  ----PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                  +     +            + +  ++  E  RLLYV MTRA  +L +       
Sbjct: 863  VDVTDKLAPNHVRLSIDTLPYVQNEREIHLASISEQMRLLYVAMTRAERKLYLVGKGRQE 922

Query: 672  NEKKSNQRT-------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            + +K                        W   +   F ND+     +     +       
Sbjct: 923  SLEKKTFPAPENGRLAASIRRTMTSFQDWIWALQTVFKNDDLTFSTRFVTDSDLTSEKIG 982

Query: 713  E----WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------ 762
            +                + E I++ +D  +   +L +  +  I+ P +  PS I      
Sbjct: 983  QLKLKERIVEENLAHNRQSEDIRRALDILENVDRLNTQYRAAIHLPSVRTPSQIKKFYEP 1042

Query: 763  -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                                T  +    +  +       G  +H+L+Q I          
Sbjct: 1043 VMDTDGVEIMEKKTPDFIGKTSFELPDFAKKAPVTGAQIGSAVHELMQRIPLNQLPTI-- 1100

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPK 859
             I        +     + K  L  I    E  +    +  +   Y E   +   +     
Sbjct: 1101 AILKEILAQVQAEETVKKKIDLQKIASFFETELGQLLLKQADKVYREAPFAMLKQDQASG 1160

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
            ++ ++ G +D   +    I +F+YKT  +       +   + AQLS+Y + L+ SY  + 
Sbjct: 1161 QNFVVRGILDGYLLLDDRIVLFDYKTDQYT--NPSELVERYQAQLSLYAEALRRSYGIEK 1218

Query: 920  LVCLLIYVSEPKVFII 935
            +   L+ +   ++ ++
Sbjct: 1219 IEKYLVLLGGVQLQVV 1234


>gi|58617374|ref|YP_196573.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Gardel]
 gi|58416986|emb|CAI28099.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium
           str. Gardel]
          Length = 857

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 187/647 (28%), Positives = 306/647 (47%), Gaps = 43/647 (6%)

Query: 34  YVSLSMETGNPTILKKAQTLQQASQTQCIE--ERFSLLSSFFLTQKFTPQKNI---ITQE 88
           ++  ++  G+    K +  L             + +  +  F+      +K+I   IT++
Sbjct: 214 FLIKALSKGSTRDQKISNKLTAWMNLSEKYKIAKLNEYTKIFINSTSLEKKSISSIITKK 273

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
                P +++ +   Q+E ++  + F   K+ + T+    + K     Y++ K++   LD
Sbjct: 274 TLNDFPQIEKIIIDIQEEVLEFTNTFYANKIAERTVHLTEITKCFTKLYQQNKQRLNYLD 333

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            +D+I     LL       WI + +D +I+H+L+DE QD S+ QW++I  L +DFF G  
Sbjct: 334 HDDVINLALKLLINPHYKDWILFHLDSKIDHVLVDESQDNSIKQWQIISELCQDFFTGIG 393

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
           T    +TLF VGD KQSIYSF  A P           +++        I+ L  SFRSTA
Sbjct: 394 TTEETKTLFIVGDIKQSIYSFQNARPDYFKPMCNYFAQKSNQY----KILYLKQSFRSTA 449

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL +VDK+F+        +   T  I H   R    G +++W    ++++      + +
Sbjct: 450 PILKLVDKIFNNFRQEISFT---TEAIHHEIFRKHDPGYLEIWPIFHTENN------KYN 500

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
           +    D      +  +LA  IA  I   I    I    K+R I A DIL+LVR R  T  
Sbjct: 501 FLENIDHKITPDTNLLLASTIANKIHTWIKNQRILP-AKQRTISAGDILILVRHR--TSF 557

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
           I  +   LK    I  +  D+F + D + I+DL+ LG F+L  E+DL+   +LKSP+F F
Sbjct: 558 IDHMITELK-KLNIPTLERDKFKVMDSIIIQDLVNLGEFLLLPENDLALAGLLKSPIFEF 616

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +E+ IF +   R     ++E +Q        KF ++  Y+ +LI+I+Q  +P D +  I+
Sbjct: 617 TEEQIFNLAYNR-NNLHLWEVLQ-------LKFSYISDYLKQLINISQTHNPLDTYNYII 668

Query: 509 GAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
              K   +FI R G     +++ EF+N  ++ E +  +SLQ  I  ++   P IK   + 
Sbjct: 669 SQHKH--KFIKRLGQSNIEEIIGEFINLLIKFELDHINSLQAFIHWIKNTNPEIKSDINH 726

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             N ++IMT+H AKG++SP+VFL DT +             +  + D    P W      
Sbjct: 727 TKNYIKIMTIHNAKGMQSPIVFLTDTTTIPK--------SDLQLIFDTENTPFWC--RND 776

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            ++    L    K +   EY RLLYV MTRA D+L I       ++ 
Sbjct: 777 THDFCEKLKTQQKINEYNEYLRLLYVAMTRAEDELYITGTPPIQSKS 823


>gi|194467461|ref|ZP_03073448.1| recombination helicase AddA [Lactobacillus reuteri 100-23]
 gi|194454497|gb|EDX43394.1| recombination helicase AddA [Lactobacillus reuteri 100-23]
          Length = 1392

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 157/1071 (14%), Positives = 310/1071 (28%), Gaps = 167/1071 (15%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            ++  E    +                  +            +  Q L    Q        
Sbjct: 338  IAKEELLTELTTFRDQFTALLSKATESQLDAKTVDSLQKDQQMMQELLDLLQPPTWNTIR 397

Query: 67   SLLSSFFLTQKFTPQKN-----IITQEINKKSPDLKEKLKKSQDEFIKIRD---RFNTYK 118
             L ++    +     K+      + + +      +K++  +  D F   R+   R  +  
Sbjct: 398  DLFANAKFARMGGKPKDDELAEEVYKSLGSARTGIKKQFDQLVDRFFNYREDQFRLISTH 457

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR---YKIDQ 175
              +       +       Y++ K    VL+F DL      +L   D     +     +  
Sbjct: 458  AQELLRELSAVTINFRRRYQQTKLNRHVLEFSDLEHYAYAILTPPDDQPNWQTLVKDLQN 517

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                I+IDE QDT+ +Q  ++  LT             + LF VGD KQSIY F  A+P 
Sbjct: 518  HYQEIMIDEYQDTNRLQESILMKLTS---------PERKNLFMVGDVKQSIYRFREADPT 568

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTT 293
              L + +  ++     G     I L  +FRS  ++ +  + +F    +     +  D   
Sbjct: 569  LFLGKYQNYRQ-----GNDGEAIVLGENFRSMTNVTSFTNILFEQLMDREVGEIDYDEDA 623

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             +++ ++   +    ++    V  +D+     ++      D   ++   +   R I   I
Sbjct: 624  HLKYAATYYEENQANKVQPTEVLLYDANALDPEK-----EDIEHEDDKLAGEFRMIGMRI 678

Query: 354  SNMIGTDTI---FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+    +     +G+   IQ  DI++L R +     I        N   I +  +D  
Sbjct: 679  KQMVENQELIFHPEDGQMHPIQYGDIVLLERTKA----INNSLMEEFNKLNIPLTVHDVE 734

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
                   ++ +M+L + I + + D+    +L+SP+   +  ++  I  Q    +      
Sbjct: 735  SYFQATEVRVMMSLLKIIDNPQQDIPLAAVLRSPIVGLTNQELAFIRLQNRSVDYYAALQ 794

Query: 471  QKFANCGISKFQH------------------VIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                N      +H                   +  +      AQ  +  D    I     
Sbjct: 795  SFMGNYQRKALRHQSLLTSEQVSALYEKADHFLGLLRVFRQTAQQQTLVDLIWQIYDQTG 854

Query: 513  GRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--- 568
                      G++    L          EQ+S+  L + I  +E+     K    A    
Sbjct: 855  YLDYVGAMPGGHQRQANLHALYQRAHSYEQSSFKGLYQFIRFIEKMQEHDKDLGVAPTQL 914

Query: 569  -HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              N V +MT+H +KGL+ PVVFL+D           +   +  +                
Sbjct: 915  TANTVNVMTIHGSKGLQFPVVFLIDATHGFNKGAARENAVVDAAAGVGIRYMDDQRVIYD 974

Query: 628  RN---NIVSDLIKHLKKSTQE--------------------EYNRLLYVGMTRAS-DQLI 663
                  ++ ++ +  +                         E  R   +  +     +  
Sbjct: 975  TPQRQAVIEEIQRGERAEDLRVLYVALTRAEQRLVITGSFNEEMRTQSLAGSWQRWQKAY 1034

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDER-----------------VKKIKLTNSINK 706
              K+     + +    ++ D V  +                       +   K+T     
Sbjct: 1035 QSKNLLIGPQPRITANSFMDWVGLALARYPEFNAQQLSRGNVTLEESTLADTKITGLAAD 1094

Query: 707  DEWIAYEWSTHH-----------PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
              +IA  ++                    E+  T+     EQKI + L     + +    
Sbjct: 1095 PHFIAKTYTALDVSDGLAKIGQNASANVTEKNNTVATDASEQKIEQILRYRYPHLVATKT 1154

Query: 756  ILNPSTIDTKGKTNLESLLS----------------------------------DNQTFN 781
                S  D K                                            +     
Sbjct: 1155 TAYQSVTDVKRVFEDPDTRDMARWDYDQQQKVKTQGIYLNNNFDVPAFIQQTTHEPVATE 1214

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLS-ITRLLENPMMT 838
             G   H + Q +          F+     K    KL        +    I    +  +  
Sbjct: 1215 IGTATHLVFQKLPLDEGLINVEFVDQEIQKLVGEKLINPVVAARINREGIVAFYQTAVGQ 1274

Query: 839  TAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFIFEYKTH 886
              +    D + EV  S  +N             + I+I G ID    + + I + +YKT 
Sbjct: 1275 KILKHPADYHREVPFSMIMNGHELFKGVNVSDDERILIHGIIDGYLRTDEGIILVDYKTD 1334

Query: 887  HHVPQ----EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
            H        ++  I   +  QL +Y++ L        +   L  +   +  
Sbjct: 1335 HLNKDYRNFDLARIKDRYRGQLELYKEALNLMEGIPVVQMGLYLLELGEFV 1385


>gi|322516094|ref|ZP_08069031.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124]
 gi|322125509|gb|EFX96855.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124]
          Length = 1217

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 154/1021 (15%), Positives = 331/1021 (32%), Gaps = 143/1021 (14%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L++  GL+  E                +S +   ++              + L +   T 
Sbjct: 254  LRDHLGLAQREFA---KAKYLNNVSDAISLLEGALA--------NDQTDMEDLLKQLLTL 302

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                  + +     T+    +     +  NK   +   +L++   +   +          
Sbjct: 303  SGGTGLTNM-----TRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDI 357

Query: 121  KSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
               L  L       +  Y +AK +    +F D+      +L++      +        + 
Sbjct: 358  LPLLELLQSFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEENPE---VAASYRDRYHE 414

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +++DE QD S  Q  ++  L           S+    F VGD KQSIY F  A+P+    
Sbjct: 415  VMVDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNG 463

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            + ++  +          +I L  +FRS +++L   + VFS   + +        T    +
Sbjct: 464  KFQLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVA 519

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     Q      +Q +       E+  +  +    +  +S     +   I  +   
Sbjct: 520  -----GSEKQREPHPENQTEVLIYNSDEANVTPDEESADQPISSGEISLVIKEIIKLHEQ 574

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAI 418
                       ++ +DI +L   R               ++ I +V ++ +    + L +
Sbjct: 575  G----------VRFEDITLLAPTRNTYLD----LMASFEEHGIPLVPDEYKSSYLESLEV 620

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG- 477
              ++   R I +  +D + V +L+SP+FNF+EDD+ +I  Q  + +   + +      G 
Sbjct: 621  MIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLARIAVQADKGQFYDKLLAAHTKSGL 680

Query: 478  ---------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVID 527
                      +K   +I+ + +    +++ S +D    I   +       S     +   
Sbjct: 681  HPEVVTQGLETKLTLLIETLSDWRDYSKWHSLYDLIWKIYDDRFYYDYVGSLPRAEQRQA 740

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELE----QYPPTIKRAHSANHNEVRIMTVHTAKGL 583
             L          E+  +  L   I  ++          + A     N V +MT+H +KGL
Sbjct: 741  NLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVADLVPKNAVSLMTIHKSKGL 800

Query: 584  ESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            E   VF++    +   H                  +  +  L D     +          
Sbjct: 801  EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETL 860

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS------------------- 671
               +  +  ++++  E  RLLYV MTRA  +L +    +                     
Sbjct: 861  TFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVAL 920

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI----AYEWSTHHPENTPLERE 727
             ++ +  + W   +  +F   +    ++   +             + +    + +   + 
Sbjct: 921  RDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELIPEAIGQVEVQAAVDADDLSNNRQT 980

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-----------------NL 770
            E IK+ +   +  KKL       I+ P +  PS + T  +                   L
Sbjct: 981  EEIKRALTVLESVKKLNQLYAPAIDLPSVRTPSQLKTFYEPVMDTEGVDIMDKKEEVQPL 1040

Query: 771  ESLLSDN----------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
            E+  +                 G   H+L+Q +        ++   +            +
Sbjct: 1041 ETATTFELPDFGQKIKVTGAAVGSATHELMQRLILSDTVTLQDLTQAL--SRVSADDQVK 1098

Query: 821  YKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
             +  L  +    +  +    ++       E   +   +    K+D ++ G ID   + + 
Sbjct: 1099 ARVQLEKLLGFFDTELGKLILANRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLED 1158

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP--KVFI 934
             I +F+YKT H    +   +   +  Q+S+Y K L  +Y    +   LI +     +V  
Sbjct: 1159 RIVLFDYKTDHFT--QPGELKERYKGQMSLYAKALSQAYQVDKIDKYLILLGGKNLEVVE 1216

Query: 935  I 935
            +
Sbjct: 1217 V 1217


>gi|226237522|dbj|BAH47270.1| ATP-dependent exonuclease/helicase subunit A [Streptococcus suis]
          Length = 1100

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 162/985 (16%), Positives = 323/985 (32%), Gaps = 131/985 (13%)

Query: 42   GNPTILKKAQTLQQASQTQCIEERFSLLSSF--FLTQKFTPQKNIITQEINKKSPDLKE- 98
            G+       + +          ++  L+      L      +   +T     K   L   
Sbjct: 152  GSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINNQSRGKGLTNANRPKDEHLIAF 211

Query: 99   -------------KLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
                         +L+    E  ++   +    +     +         +  Y + K K 
Sbjct: 212  KEEYNAGKSQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKE 271

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
               +F D+      +L++    A IR    ++ + +++DE QD +  Q  ++  L     
Sbjct: 272  AAFEFGDIGHFAIRILEEN---ADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLL----- 323

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  S+    F VGD KQSIY F  A+P     +  + Q       Q   +I L  +F
Sbjct: 324  ------SNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQ----ANPQSGKLILLKENF 373

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS  ++L   + +F+   + Q        T    +   GQ       E     +D Q   
Sbjct: 374  RSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYDQQ--- 430

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
              +S  S  D+  +    +     +A  I  +   +             KDI +LV+KR 
Sbjct: 431  --DSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEE---------GADFKDITLLVQKRT 479

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                   L   +   + I +V +         L +  ++   R I +  +D + V +LKS
Sbjct: 480  H----NDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLKS 535

Query: 444  PLFNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQ----HVIKYIHELIH 493
            P+F F ED++ +I  Q          E   +   +       K +      +  +     
Sbjct: 536  PMFRFDEDELTRISLQAGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFLSILENWRA 595

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
             A+  S +D    +   K       +   G++    L        + E+  Y  L   I+
Sbjct: 596  YAKLHSIYDMIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIA 655

Query: 553  ELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVF---------- 598
             +++     K           N V++MT+H +KGLE   VFL++   +            
Sbjct: 656  MIDRALANDKDLADVQEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVII 715

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            S K+   +  +  + D    P+   +         + ++ LK +   E  RLLYV +TRA
Sbjct: 716  SRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQMRLLYVALTRA 775

Query: 659  SDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              +L +    N                     + +  T+ D +                 
Sbjct: 776  EKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKV 835

Query: 703  SINKDEWIAYEWST-------HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             +  ++    +                 + + E I Q +D+    ++L    K  I  P 
Sbjct: 836  FVTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPS 895

Query: 756  ILNPSTIDTKGKT---------------------NLESLLSDNQTFNRGLIIHKLLQVIF 794
            +  PS I    +                         S          G  +H+L+Q + 
Sbjct: 896  LRTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLD 955

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVS 852
                        +    +A+     +    +  I    +  +    ++     + E   +
Sbjct: 956  LSWLVTEDTVRAALEAVHAEQAIKDKIN--VQMILDFFDTDLGREILANTDKLHREAPFA 1013

Query: 853  --GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
                 +  +++ ++ G ID   +   +I +F+YKT  +   +   +   + AQ+ +Y + 
Sbjct: 1014 SLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKY--DQPIQLSQRYQAQMQLYAEA 1071

Query: 911  LKDSYPNKSLVCLLIYVSEPKVFII 935
            LK +Y    + C LI +   ++ ++
Sbjct: 1072 LKKAYKIDRVDCHLILLGGERIEVV 1096


>gi|227507848|ref|ZP_03937897.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis
            subsp. gravesensis ATCC 27305]
 gi|227192686|gb|EEI72753.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis
            subsp. gravesensis ATCC 27305]
          Length = 1254

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 143/1006 (14%), Positives = 303/1006 (30%), Gaps = 146/1006 (14%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
              L+Q          F  ++   LT+     +  + + +   +  +K++ +K    +   
Sbjct: 273  DGLRQLITGFD----FESMTKAKLTKDADEYQKQVHKLVKGTNDQMKKQWQKLVTGYFAW 328

Query: 111  RDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-RDVS 166
             ++ N              +T+ +   A Y++AK +  ++ F D+     D+L    + +
Sbjct: 329  NEQDNVDLMNAAKARIEKLVTVVRTFRAAYKQAKARRHLMQFIDIEHAAYDILNDVSEQA 388

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +R ++  +   I+ DE QD + +Q  ++  +           S     F VGD KQSI
Sbjct: 389  KQVRQRLQDQYYEIMTDEYQDNNRLQDAILNKIA---------RSDRGNRFMVGDVKQSI 439

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA-- 284
            Y F  A+P   ++++               +I L  +FRS  +I    + VF    +   
Sbjct: 440  YRFRLADPTMFIKKQAQY----IEQDNDNELISLSENFRSAKNIDDFTNLVFEQTMDHQV 495

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
              ++    + ++  ++             +     S      E   +       +S    
Sbjct: 496  GDIAYTGKSKLQFGATYYPDDMKADASLIIYRTKSSVAATSNEDLGAGDQIEDSDSGQ-- 553

Query: 345  LARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             A  IA  I  ++    +  + K    R +   DI ++     +          +   Y 
Sbjct: 554  -AEIIAQKIRTLVDDKQLIYDKKLEEMRPVTFGDIAIISPTHNN----ELTLSDIFTQYG 608

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            I               I+ +M+L   I +   D++ V +L+SP+    E+ +  +   R+
Sbjct: 609  IPAEITGAKSYFKTTEIQIMMSLLSIIDNPFQDIALVAVLRSPIVGLDENQLAFLRINRN 668

Query: 462  ETETVYE-----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                                  +A     K    +K +     +AQ          I   
Sbjct: 669  TGNYYQAVLDFYRGFDRLEPNDYATRIYQKVDRFMKQLRRFKDVAQQDGLVSLIWDIYDQ 728

Query: 511  KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
                        G +    L    +     E+N +  L + +  +++             
Sbjct: 729  TGYLDYVGGMPAGLQRQTNLHALYDRAADYEKNGFKGLFQFVKFIQRMQERDNDLANANP 788

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            + + N V +MT+H +KGL+ P+VFL D G Q      I K  +               + 
Sbjct: 789  TTSENTVHVMTIHGSKGLQFPIVFLNDVGKQFNMQDTIGKYVLNDHWGIGIDYLNNQTRE 848

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNR------------LLYVGMTRASD----QLIICKHSN 669
                     ++   K +   E  R            L  V   +       Q +I     
Sbjct: 849  FRSPLQKQAILDMTKNAGLSEEMRKLYVAMTRAEQRLYLVAKVKGEKSGDNQQLIQGWQG 908

Query: 670  TSNEK--------KSNQRTWYDMVYDSFHNDERV----------------KKIKLTNSIN 705
             ++          ++  +++   +  +      V                  +   +  +
Sbjct: 909  LTDANELVLPAAVRNAAKSYLGWIGPAISRHPNVLDRFGDSIHSNVLAGDPTLFNLDFYD 968

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--------LFSPIKNDINEPYIL 757
             +            + +P +  + + Q       P K           P           
Sbjct: 969  DERITKASGRQKANQTSPNDFIDQLAQKKLTVAQPTKAAISQVMTFKYPHTAATKTTAYQ 1028

Query: 758  NPSTIDTKGKTN--------------------------------LESLLSDNQTFNRGLI 785
            + S I                                       +            G  
Sbjct: 1029 SVSEIKRLFDDPDNTQLSGYSTLDVNKLAKTGRYLKTDFEVPQFISEGGGKPAPTEIGTA 1088

Query: 786  IHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS- 842
             H +LQ I   T+P  +    + +   K   +  A   +  +  + R  ++ +    ++ 
Sbjct: 1089 THLVLQQIDLTTVPTVEHIEALIANLVKQQVISSAVASQINVDEVLRFYQSEVGEYVLAN 1148

Query: 843  -CDSYSEVSVSG---------KINCPKKD-IIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
               ++ E   S                +  I+I G ID   ++ + +++F+YKT H  P+
Sbjct: 1149 PESTHREAPFSLLMKARDVFKDFQDNDEQTILIHGIIDGYVVTDEAVYLFDYKTDHITPK 1208

Query: 892  -EIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935
              I  I   +  QL +Y   L      + +    L  +S  +   +
Sbjct: 1209 TTISDIIDRYRGQLELYGLALSKIL-GRPITHKYLYLLSANQAVQV 1253


>gi|315658704|ref|ZP_07911574.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis M23590]
 gi|315496335|gb|EFU84660.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis M23590]
          Length = 1216

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 140/943 (14%), Positives = 302/943 (32%), Gaps = 128/943 (13%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +    K   L  K++           + +  ++         + K +   + + K+   +
Sbjct: 303  KAYYDKYKSLVSKVQADYFSRSAQDLKRDMQRLAPRVNILADIVKDVITAFGQKKRSRNI 362

Query: 147  LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            LDF D       +L   D   + I     ++   IL+DE QDT+ +Q +++  +      
Sbjct: 363  LDFADYEHFALQILTNDDGSPSHIAEMYREQFAEILVDEYQDTNRVQEQILSCIKTGSEA 422

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                      LF VGD KQSIY F  A+P   + + +         G     I+L  +FR
Sbjct: 423  -------DGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFNAEGNGTGI---RIDLSQNFR 472

Query: 266  STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            S  ++L+  + +F     E    +S D    + + +        V+L   + +  +    
Sbjct: 473  SRKEVLSTTNYLFKHMMDEEVGEISYDDAAQLYYGAPFDEVDHPVELRTLIEANKEH--- 529

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVR 381
                          + + +   A  I   + +++    IF    G  R    KDI++L R
Sbjct: 530  -------------SELNGSEQEAEYIVKQVKDILENKRIFDMKTGHYRQPTYKDIVILER 576

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                        +    D+ I    N R    +   ++ +++  R I +   D+  V ++
Sbjct: 577  SFSQARD----LQQAFKDHDIPFHVNSRQGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLM 632

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIA 495
            +S ++ F+ED++  I       +  Y+ I  + N  +       K Q+ I  I      +
Sbjct: 633  RSVIYQFTEDELANIRVFSPNDDYFYQSIVNYINHDLANKKLVKKLQNFIADIKMYQIYS 692

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            Q    +             Q F    G +     L    N  +  E +S+  L + I  +
Sbjct: 693  QSNPVYQLIDKFYHDHYVIQYFSGLIGGKGRRANLYGLFNKAIEFENSSFRGLYQFIRFI 752

Query: 555  EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++     +     N      N V++MT+H++KGLE P V       +       +++ + 
Sbjct: 753  DELIDRGQDFGEENIVGPNDNVVKMMTIHSSKGLEFPFVIYSGLTREFNKKDLREQVILN 812

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                               +          +K    E  RL+YV +TRA +QLI+     
Sbjct: 813  QKYGLGIDYYDIDKNMAYPSLSSVAYKAITEKEMISEEMRLIYVALTRAKEQLILIGRLK 872

Query: 670  TSNE-----------------KKSNQRTWYDM---VYDSFHNDERVKKIKLTNSINKD-- 707
            ++ +                 ++      +++   +     + E    +   N I     
Sbjct: 873  STKKLEEYEKLAISGSHIAINERLTAEHPFELIYGILSKHKSYELTPDLMFENDIANLAE 932

Query: 708  -----------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                             E    + +     +     +     +  +     K   P   +
Sbjct: 933  NIRPNVNIIIDYFEDIIEANHQDMNEQRSISDLNTLDTGNDDIKAKITQQLKFKYPNVIN 992

Query: 751  INEPYILNPSTID-TKGKTNLESLLSDNQTFNRGLIIH---KLLQVIFTLPEHKRKNFIT 806
              +P   + S +         ++     + +  G+  +   + ++ +     ++    + 
Sbjct: 993  TTKPSKQSVSELKRQLETEESDTNYDRVRQYRIGVATYERPRFMRHVTKRKANEVGTLMH 1052

Query: 807  ---SYCTKNAKLWPAKEYKNLLL-------------------SITRLLENPMMTTAM-SC 843
                +     K    +  +  +                     I   +++ +      + 
Sbjct: 1053 TVMQHLPFKPKRMTEEALEQYIDHLITQQIIEHDAKKDIKFPEIMTFIQSDLYLEIAEAE 1112

Query: 844  DSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTHH-------HV 889
              Y E+           I+   +D+ II G ID I       +  +YKT           
Sbjct: 1113 QIYRELPFVVNQAKVDNISDNHEDVAIIQGMIDLIYKKDNQYYFVDYKTDAFNRRKGMTD 1172

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
             +  E +   +  Q+  Y+  L+    +  +   L +    ++
Sbjct: 1173 EEIGEQLKEKYRIQMQYYKNALETML-HTEVKGSLYFFQFGRL 1214


>gi|88607848|ref|YP_504873.1| ATP-dependent DNA helicase UvrD [Anaplasma phagocytophilum HZ]
 gi|88598911|gb|ABD44381.1| ATP-dependent DNA helicase, UvrD/Rep family [Anaplasma
           phagocytophilum HZ]
          Length = 788

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 184/641 (28%), Positives = 314/641 (48%), Gaps = 34/641 (5%)

Query: 38  SMETGNPTILKKAQTLQQASQT--QCIEERFSLLSSFFLTQKFTPQK--NIITQEINKKS 93
           ++  G     K +  L+  +    +  ++    L +F        +   +I ++++ ++ 
Sbjct: 143 ALNCGGLRDKKISTKLRSWNNLVHKTHKKIEEYLKTFICIASLEKKDISSIASKQVLQQC 202

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
           P +   +   Q++ ++  +++ + ++ K T   + L ++    YE  KK    L+++D+I
Sbjct: 203 PTVGGAIVNEQEKLLEFAEQYYSARISKRTFHIMQLVRHGIRIYEYDKKNAKYLNYDDII 262

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +  L+       ++ + +D +INHIL+DE QD SL QW ++  L  +FF G +++++ 
Sbjct: 263 NLSLKLISDPTHKDFVLFSLDSQINHILVDESQDNSLEQWHIVAELCNEFFTGLSSNTNQ 322

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           RTLF VGD KQSIY F  A P       +   +++TN       I+L  SFRST  IL +
Sbjct: 323 RTLFVVGDVKQSIYGFQNARPDYFHFMHKYFAQKSTNP----VTIQLSDSFRSTPPILAL 378

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
           VDKVF+            +  I H + R  + G V++W  + S    +  P      S  
Sbjct: 379 VDKVFNTLREQVSF---QSQEIVHNTYRANEYGYVEIWPLLRS--TRRKKPYAWDLESIK 433

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           +       + +LA+ I+ TIS+ I  +      K R ++A DIL+LVR R    +     
Sbjct: 434 ECGENADHSLLLAQTISQTISSWIKEERKL-QAKNRPVEASDILILVRHRS---VFVDQM 489

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   I V G DR  + D++ I+DL+ LG F+L  E+D+S   +LKSP+F +++  +
Sbjct: 490 IASLKQENIPVTGRDRCNIMDYVVIQDLVNLGEFLLLPENDISLATLLKSPIFRYTDSML 549

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
           F+I +   E  +++  +QKF        Q  +KY+  LI I+Q  SP D +  IL     
Sbjct: 550 FEIVSSSSEKCSLWNKLQKFTTM-----QETVKYLKLLISISQNRSPLDLYFFILSQH-- 602

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           ++QFI   G   +++++EF+N  +  + N+ + L+  I  ++   P  K   S   N VR
Sbjct: 603 KEQFIKCLGQTSVEIIEEFINLLIAFQSNNLNLLEYFIQWIKSTNPVTKSDMSIAKNLVR 662

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           IMTVH+AKG+++P+VFL DT S             +  + DD   P+W       N+   
Sbjct: 663 IMTVHSAKGMQAPIVFLPDTTSVPK--------CDLQVVFDDKNTPLWCAS--DTNSYCK 712

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           +L     +    EY RLLYV MTRA D+L I      ++  
Sbjct: 713 NLKLRKSQEEYNEYLRLLYVAMTRAEDELYIAGIGTANSRS 753


>gi|293115645|ref|ZP_06604556.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876]
 gi|292809250|gb|EFF68455.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876]
          Length = 1187

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 139/941 (14%), Positives = 296/941 (31%), Gaps = 119/941 (12%)

Query: 70   SSFFLTQKFTPQKNIITQ--EINKKSPDLKEKLKKSQDEFIKIRDRF------------- 114
             + F        KN  T+         +L + +   ++   K                  
Sbjct: 275  CNSFTELNNNADKNFRTKPRAGKGTDKELSDYITAERNSLKKEITEIIDLYCCYPYEDII 334

Query: 115  -NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW----I 169
                 +  S  A +         Y EAK++  + +F D+     ++L  ++        +
Sbjct: 335  DEVACVRTSITAVVDFTTEFADRYREAKEERQIAEFSDVAHRALEILVSKEGKTEKYTHV 394

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              ++ +  + I IDE QD++ +Q +++ +++               +F VGD KQSIY F
Sbjct: 395  ADELSELYDEIYIDEYQDSNYVQEKILNAVSR-------CRFGCNNIFMVGDVKQSIYRF 447

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
              A P+  + +        T        IEL  +FRST +++  V+ +F         + 
Sbjct: 448  RMARPEIFIDKYNTY----TEEQSPERKIELHKNFRSTVNVINSVNDIFRRIMKKSVGNI 503

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            +               G +        + +   +     +    D    +S   I A   
Sbjct: 504  EYNDDAALN-----YGGNI--------KDEINTDTDICMYVKESDDYNDDSKGIINAEIA 550

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            A  I  ++             +  KD ++L+R  KD             +  I       
Sbjct: 551  AMRIKEIMAE--------NEELTYKDFVILLRSGKDA---GPEYVDTLGNMGIPADYAST 599

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
                    ++ ++ + + I ++  ++  + ++KS    F+ +++  I   R +       
Sbjct: 600  TGYFSAYEVRLIIDVLKVIDNERQEIPLLAVMKSYFAGFTANEMALIKGNRRKKNYYDCL 659

Query: 470  IQ--KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVI 526
             +  K       K +  + +I E    A   +  +  + ++ +            G+   
Sbjct: 660  CEFSKGDGETAKKCRKFMNFIGEYRKKAGVMTIRELVSELIYSTGYYDYVGFLLNGSRRK 719

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAK 581
              ++ F+    + E+ S+S L   +  +++                ++N VRIMT+H +K
Sbjct: 720  MNINMFILQAEKFEKTSFSGLFNFVRYIDKIRNYDVDFGEAGNAGNDNNYVRIMTIHQSK 779

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ PVV L ++  +        K+ I               + K +      + K  ++
Sbjct: 780  GLQFPVVILGNSDKRFNEEDLKSKIIIDEDFGISMDYVDLKSRRKQKFLFKEIMKKKYER 839

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF------------ 689
                E  RLLYV +TRA  +L++    ++   ++        ++   F            
Sbjct: 840  EGTGEEIRLLYVALTRAVQKLVVTGVVSSKKYEEFTSDIDRSIIDMKFILGNKNYISLIL 899

Query: 690  ------HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                      +   I   N +  D             N    R  + ++  ++ K   + 
Sbjct: 900  GALQSDELCGKYNYICYDNELLTDNVKDAVKEDLTDINELFRRAFSGRKDTEQVKNTVEY 959

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTNLESLL--------------------SDNQTFNRG 783
              P K   N     + S I        E                        + +   RG
Sbjct: 960  IYPHKEIKNLKSKYSVSEIKHMSMEENEDEASKVIAPERTKAVPRFRKGVDEEVKGTLRG 1019

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA 840
               H+  +++      K  N I  Y      A     +    + L      L+  +    
Sbjct: 1020 TAYHRFFEIL-NYDCCKDYNSIEEYLKTSVAAGKISEEYAGLINLKRFEEFLQTDLGKRM 1078

Query: 841  MSCDSY----SEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             S         E     ++            + I++ G +D     +  ++I +YKT   
Sbjct: 1079 GSAYKKGLLFREQPFIMELGADMIDKEYPSDEKILVQGIVDAFFFEEDKVYIVDYKTDRV 1138

Query: 889  --VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
                   + +   +  QL +Y   +      ++  C +   
Sbjct: 1139 EQGKAGEKALVERYHKQLELYADTISRVTGKETGGCYIYST 1179


>gi|194290034|ref|YP_002005941.1| helicase, uvrd subfamily [Cupriavidus taiwanensis LMG 19424]
 gi|193223869|emb|CAQ69878.1| Putative helicase, uvrD subfamily [Cupriavidus taiwanensis LMG 19424]
          Length = 1213

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 167/1014 (16%), Positives = 330/1014 (32%), Gaps = 114/1014 (11%)

Query: 1    LKNRFGLSL--NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
            L +  G     +   + +  + W      ++        S +     I +    +    +
Sbjct: 231  LSDCLGEDAQGDVLLQALADEGWRDACEALAARLGAAGRSEQAHAGRITEALMAIAAWRE 290

Query: 59   TQ-----CIEERFSLLSSFFLTQKFTPQKNIITQEINKKS--PDLKEKLKKSQDEFIKIR 111
                     E  F+ L + F T    P+    T  + + +    + + L         + 
Sbjct: 291  AGAVPGKPAERVFAQLRAAFFTTTGGPRSLRRTAALARAAGGEGMVDALLDEHAAICAML 350

Query: 112  DRFNT----YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            D  +       +     A   +   L   Y++ K +   +DF DL      L+   + + 
Sbjct: 351  DEISARCCEAAVLAINQALFRIGDALLTRYQQHKDEQRAMDFADLEWQAARLMSDEETAT 410

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +++ ++D    H+L+DE QDT+ +QW ++    + +  G        T+F VGD KQSIY
Sbjct: 411  YLQVRLDARYRHLLLDEFQDTNPLQWRIL----QGWLAGYAGLGERPTVFLVGDPKQSIY 466

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F  A+ +       + +        + +           A++L  V+ VF         
Sbjct: 467  RFRRADARLFGAAGEMLRDAFGATVLRTNRTRRN-----RAEVLDWVNAVFDSARAEGRY 521

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVS------------------------QHDSQCN 323
               ST T        G  G V L   V                             +  +
Sbjct: 522  PLYSTQTTALG----GCGGPVWLLPLVEPDEADDADDADHADHADESVAADANGEPANAD 577

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                           +S      RR+A  +  +  T  +     +R  +  D+ +LVR++
Sbjct: 578  SAHRDTLLQPRRQAGDSLRLEEGRRVAAWLRLVRDTVPVHEGSTQRPARWSDMHLLVRRK 637

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                      R       I  +   R  L   L   DL AL  F+++ E DL    +LKS
Sbjct: 638  THLADYERALRE----AGIPCLSPRRGGLLATLEALDLSALLAFLMTPESDLDLAHVLKS 693

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQK-FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            PL   ++DD+  +     E                    +  +  + + + +A     HD
Sbjct: 694  PLVGATDDDLLALAQMEGEGGWWARIEAAGLPAQVSDALREGVPRLRQWLRVAPHQPVHD 753

Query: 503  FFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
                I    + R+++          +V+  LD FL  +L  +   Y SL + I EL++  
Sbjct: 754  LIDQIFHGGEVRRRYAEAAPPDIREQVLANLDAFLKLSLDLDGGRYPSLPKFIDELQEIR 813

Query: 559  PTIKRAHSANH---------------------NEVRIMTVHTAKGLESPVVFLVDTGSQV 597
               +                            + V I+TVH AKGLE+P V L+D     
Sbjct: 814  RGDEGESPDEGGMGDHAEDLEPAGDDPAYAGLDAVHILTVHAAKGLEAPFVVLLDANHSE 873

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             +      +   P  +  P       +   R    + L +      + E   LLYV MTR
Sbjct: 874  PAADRGGILVDWPPSSPVPRHFSAYGKRSERGLARAPLFEAEAALGERENWNLLYVAMTR 933

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A   L++      ++   + +                         +          +  
Sbjct: 934  AQQGLLVSGVKGRASRGSAGEGNAEIAGSWYV-------------RLQAAGVGEMVPAYP 980

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                   + +  +   + E           ++ I++      +  D +   + + ++ + 
Sbjct: 981  DARGDAADAQALLPARLSEPVRFTDFRLRYRDAIDDARQAGIADDDAQAPDDSDGIVFNA 1040

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRK----NFITSY------CTKNAKLWPAKEYKNLLLS 827
                 G ++H LL+ +   P         + +  +       T  A+    ++ +  L +
Sbjct: 1041 AAARHGELVHALLERLTRYPGAFAGVPAIDTVLRWFPLTGAHTTAARSAWRQQVEEALAA 1100

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
            +  +L  P++   ++           ++   +  ++   RID++    + + I +YK   
Sbjct: 1101 VATMLRAPVLAPLLAAGDACSARNEVELYDARGRLL---RIDRLVEFDERVVIIDYKL-R 1156

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
             +PQE       + AQL  Y   +   +P K +      V+  +   IP  +L 
Sbjct: 1157 LLPQEHA----AYRAQLGRYAAAIAPMFPGKRVEAG---VATAEGEWIPAERLA 1203


>gi|325694960|gb|EGD36865.1| exonuclease RexA [Streptococcus sanguinis SK150]
          Length = 1224

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 155/1013 (15%), Positives = 322/1013 (31%), Gaps = 131/1013 (12%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
             +          +  +              T+L     L    +T  I ++   LS    
Sbjct: 248  ELEAFFSAHLEHEGREFAGAKYQENVQDALTVLAGLNELSSIDETAQILKQIVALSQLSN 307

Query: 75   TQKFTPQ--------KNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLA 125
            +Q FT +        K  + ++ N+    + E+L+    +  ++     +  +       
Sbjct: 308  SQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQLYQLDFIEQHQAECLPLVEL 367

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                       Y E KK     +F D+     ++L++      +R    +  + +++DE 
Sbjct: 368  LRDFVADFAQAYLERKKAENAFEFGDISHFAIEILERFPE---VRRFYQERYHEVMVDEY 424

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT+  Q  ++  L           S  +  F VGD KQSIY F  A+P+    + +  Q
Sbjct: 425  QDTNHTQECMLDLL-----------SRGQNRFMVGDIKQSIYRFRQADPQIFSDKFKAYQ 473

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
            +       +  +I L  +FRS  ++L   + VF    + +    D   T    +    + 
Sbjct: 474  ED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKR 529

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                        ++           S  +   +    ++ A  +   I  +I        
Sbjct: 530  EPNLANRASFLIYEGSKE-------SPEEEGDEGLPQAVSAGEVDLVIKEIIR------L 576

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMAL 424
              +  +  KDI +L   R        L       ++I +V +D        + +  ++  
Sbjct: 577  HNEDGVAFKDITLLTASRT----RNDLILASFEQHQIPLVPDDGAANYLQSVEVLVMLDT 632

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF----------- 473
             R I +  +D +   +LKSP+F+F ED++ ++  Q  +  +     +K            
Sbjct: 633  LRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENLYEKLLNALEGRGLNP 692

Query: 474  ---ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529
                     K QH  + +      ++  S +D    I   +           G +    L
Sbjct: 693  TLVTQKLQKKLQHFHETLQSWRTYSKTHSLYDLIWKIYQDRFYYDMVGTLANGAQRQANL 752

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLES 585
                      E++S+  L   I  +++             +A  + VR+MT+H +KGLE 
Sbjct: 753  YALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPVAAPKDAVRLMTIHKSKGLEF 812

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSKSRNNIVS 633
              VFL++             + +  +                        +         
Sbjct: 813  KYVFLLNMDKAFNRQDSSSAIILSRTNGVGIKYVADVSVSVEDPYAPNQLRISMDTLPYQ 872

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-------------------NEK 674
              +  L+ ++  E  RLLYV MTRA  +L +    +                       +
Sbjct: 873  QNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEALDKRQWGKSQQGRLSVSLRSQ 932

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLEREETI 730
             SN + W   +   F ++    + +               +        +     + + I
Sbjct: 933  LSNFQDWLYAIQAVFSDENLAYETRFVTDEELTSEEIGRINEPVLFPADDLADNRQSDDI 992

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK------------------------G 766
            ++ +D  +   +L S  ++ I  P +  PS I                            
Sbjct: 993  RRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYELIMDTDGLDIMDERAAFRPQPNF 1052

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                    +       G  +H+L+Q I           +        +   A + +  L 
Sbjct: 1053 DLPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVLRSALAQVQADEAVKKQIQLP 1110

Query: 827  SITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFE 882
             I+   E  +    +  S     E   +   +     ++ ++ G +D   + +  I +F+
Sbjct: 1111 KISSFFETDLGRLLIENSDRVRREAPFAMLKRDEISGQEFVLRGILDGYLLFEDRIILFD 1170

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            YKT  +       +   +  QL +Y + L  SY    +   LI +   ++ ++
Sbjct: 1171 YKTDKYKDSS--ELIARYCGQLDLYAQALSRSYGISQIEKYLILLGGEQLQVV 1221


>gi|146318409|ref|YP_001198121.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 05ZYH33]
 gi|146320605|ref|YP_001200316.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 98HAH33]
 gi|253750625|ref|YP_003024062.1| exonuclease RexA [Streptococcus suis BM407]
 gi|251764567|sp|A4W0M7|ADDA_STRS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|251764570|sp|A4VUD2|ADDA_STRSY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|145689215|gb|ABP89721.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Streptococcus suis
            05ZYH33]
 gi|145691411|gb|ABP91916.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Streptococcus suis
            98HAH33]
 gi|251819057|emb|CAZ55679.1| exonuclease RexA [Streptococcus suis BM407]
 gi|292558201|gb|ADE31202.1| putative exonuclease RexA [Streptococcus suis GZ1]
          Length = 1227

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 162/985 (16%), Positives = 323/985 (32%), Gaps = 131/985 (13%)

Query: 42   GNPTILKKAQTLQQASQTQCIEERFSLLSSF--FLTQKFTPQKNIITQEINKKSPDLKE- 98
            G+       + +          ++  L+      L      +   +T     K   L   
Sbjct: 279  GSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINNQSRGKGLTNANRPKDEHLIAF 338

Query: 99   -------------KLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
                         +L+    E  ++   +    +     +         +  Y + K K 
Sbjct: 339  KEEYNAGKSQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKE 398

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
               +F D+      +L++    A IR    ++ + +++DE QD +  Q  ++  L     
Sbjct: 399  AAFEFGDIGHFAIRILEEN---ADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLL----- 450

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  S+    F VGD KQSIY F  A+P     +  + Q       Q   +I L  +F
Sbjct: 451  ------SNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQ----ANPQSGKLILLKENF 500

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS  ++L   + +F+   + Q        T    +   GQ       E     +D Q   
Sbjct: 501  RSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYDQQ--- 557

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
              +S  S  D+  +    +     +A  I  +   +             KDI +LV+KR 
Sbjct: 558  --DSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEE---------GADFKDITLLVQKRT 606

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                   L   +   + I +V +         L +  ++   R I +  +D + V +LKS
Sbjct: 607  H----NDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLKS 662

Query: 444  PLFNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQ----HVIKYIHELIH 493
            P+F F ED++ +I  Q          E   +   +       K +      +  +     
Sbjct: 663  PMFRFDEDELTRISLQAGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFLSILENWRA 722

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
             A+  S +D    +   K       +   G++    L        + E+  Y  L   I+
Sbjct: 723  YAKLHSIYDMIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIA 782

Query: 553  ELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVF---------- 598
             +++     K           N V++MT+H +KGLE   VFL++   +            
Sbjct: 783  MIDRALANDKDLADVQEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVII 842

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            S K+   +  +  + D    P+   +         + ++ LK +   E  RLLYV +TRA
Sbjct: 843  SRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQMRLLYVALTRA 902

Query: 659  SDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              +L +    N                     + +  T+ D +                 
Sbjct: 903  EKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKV 962

Query: 703  SINKDEWIAYEWST-------HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             +  ++    +                 + + E I Q +D+    ++L    K  I  P 
Sbjct: 963  FVTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPS 1022

Query: 756  ILNPSTIDTKGKT---------------------NLESLLSDNQTFNRGLIIHKLLQVIF 794
            +  PS I    +                         S          G  +H+L+Q + 
Sbjct: 1023 LRTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLD 1082

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVS 852
                        +    +A+     +    +  I    +  +    ++     + E   +
Sbjct: 1083 LSWLVTEDTVRAALEAVHAEQAIKDKIN--VQMILDFFDTDLGREILANTDKLHREAPFA 1140

Query: 853  --GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
                 +  +++ ++ G ID   +   +I +F+YKT  +   +   +   + AQ+ +Y + 
Sbjct: 1141 SLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKY--DQPIQLSQRYQAQMQLYAEA 1198

Query: 911  LKDSYPNKSLVCLLIYVSEPKVFII 935
            LK +Y    + C LI +   ++ ++
Sbjct: 1199 LKKAYKIDRVDCHLILLGGERIEVV 1223


>gi|116628401|ref|YP_821020.1| ATP-dependent exoDNAse beta subunit [Streptococcus thermophilus
            LMD-9]
 gi|122267004|sp|Q03IZ8|ADDA_STRTD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|116101678|gb|ABJ66824.1| DNA helicase/exodeoxyribonuclease V, subunit A [Streptococcus
            thermophilus LMD-9]
          Length = 1217

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 144/1020 (14%), Positives = 324/1020 (31%), Gaps = 138/1020 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +   + +  D        +    +  + +    N +           +    +E+    L
Sbjct: 240  DSLKDGLLADFLAFLRDHLGIAQREFAKAKYLNNVSDAIILLEGSLINDQTDMEDLLKQL 299

Query: 70   SSFF-------LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-TYKMFK 121
             +         +T+    +     +  NK   +   +L++   +   +         +  
Sbjct: 300  LTLSGGTGLTNMTRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLAKHNDDILP 359

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                  +     +  Y +AK +    +F D+      +L++      +        + ++
Sbjct: 360  MLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPE---VAVSYRDRYHEVM 416

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QD S  Q  ++  L           S+    F VGD KQSIY F  A+P+    + 
Sbjct: 417  VDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNDKF 465

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRS 299
            ++  +          +I L  +FRS +++L   + VFS   +     +  D T  +   S
Sbjct: 466  QLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGS 521

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             +  +       E ++   D     + E       S  + S        +   I  +   
Sbjct: 522  QKQKEPHPENETEVLIYNSDESSTSEDEEGPDQAISSGEIS-------LVIKEIIKLHEQ 574

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAI 418
                       ++ +DI +L   R               ++ I +V ++ +    + L +
Sbjct: 575  G----------VRFEDITLLAPNRNTYLD----LMVSFEEHGIPLVPDEYKSSYLESLEV 620

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF----- 473
              ++   R I +  +D + V +L+SP+FNF+EDD+ +I  Q  + +   + +        
Sbjct: 621  MIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLTRIAVQADKGQFYDKLLAAHTKSGL 680

Query: 474  -----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVID 527
                      +K     + + +    ++  S +D    I   +             +   
Sbjct: 681  HPEVVMQGLDAKLTLFTETLADWRDYSKCHSIYDLIWKIYNDRFYYDYVGGLPRAEQRQA 740

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKG 582
             L          E+  +  L   I  +++                  N V +MT+H +KG
Sbjct: 741  NLYALALRANAYEKTGFKGLSRFIGMIDKIIASGNDLEEVTDLVP-KNAVSLMTIHKSKG 799

Query: 583  LESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKSRN 629
            LE   VF++    +   H                  +  +  L D     +         
Sbjct: 800  LEFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLET 859

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS------------------ 671
                +  +  ++++  E  RLLYV MTRA  +L +    +                    
Sbjct: 860  LTFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKETLTQQYGTNVENNRLPVA 919

Query: 672  -NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI----AYEWSTHHPENTPLER 726
              ++ +  + W   +  +F   +    ++   +             + +    + +   +
Sbjct: 920  IRDQIATYQDWIMALDTAFMRKDLKFTVRFVEAEELTPEAIGQVEVQAAVDADDLSNNRQ 979

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT------------------ 768
             E IK+ +   +  +KL       I+ P +  PS + T  +                   
Sbjct: 980  TEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKTLYEPIMDTEGVDIMDKKEGVQP 1039

Query: 769  ---------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                           +       G   H+L+Q +    +   ++   +            
Sbjct: 1040 LETASTFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQAL--SRVSADDQV 1097

Query: 820  EYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSG--KINCPKKDIIISGRIDQISISQ 875
            + +  L  +    +  +    ++       E   +   +    K+D ++ G ID   + +
Sbjct: 1098 KARVQLEKLLGFFDTELGKLILANRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLE 1157

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              I +F+YKT H        +   +  Q+S+Y K L  +Y  + +   LI +    + ++
Sbjct: 1158 DRIVLFDYKTDHFT--HPSELKTRYQGQMSLYAKALSQAYQMEKVDKYLILLGGKDLEVV 1215


>gi|296876208|ref|ZP_06900262.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC
            15912]
 gi|296432919|gb|EFH18712.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC
            15912]
          Length = 1221

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 162/1020 (15%), Positives = 340/1020 (33%), Gaps = 129/1020 (12%)

Query: 9    LNESYELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
              +  E I + L+    F    + N+  +         + +    +   +     E+  S
Sbjct: 235  EGDLMESIQQALYEAESFFAFHLSNEGQAFGKAKYLEAVEEVLDQIGSLTGPTNKEQVTS 294

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFK-- 121
            +L +     + +    +  +   ++  +L     + +    +    + ++    +  +  
Sbjct: 295  VLKAVVAISRASNGGALTNRARKEELKELVTAYNQDKTIHINRLRDLENQLYQLEFQQTF 354

Query: 122  ------STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                           +     Y E K +    +F D+      +L++      +R    +
Sbjct: 355  HQEEGPMLSLLRDFIRDFARAYLERKIQEKAYEFGDISHFAIQILEQFPE---VRQAYQE 411

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
              + I++DE QDT+  Q  ++  L           S+    F VGD KQSIY F  A+P+
Sbjct: 412  RYHEIMVDEYQDTNHTQERMLDLL-----------SNGHNRFMVGDIKQSIYRFRQADPQ 460

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                + +  Q+     G K  +I L  +FRS  ++L   + VF    + +    D   T 
Sbjct: 461  IFNDKFKAYQEE----GAKGRLILLKENFRSHVEVLDATNDVFRHLMDEEVGEIDYNQTH 516

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
               +    Q   +         +D   + ++++     D        ++    I   I  
Sbjct: 517  YLVAGSDKQRMALLQHRAEFLLYDGSQDQEEKT----EDEEAASGLETVSKGEILLVIKE 572

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-D 414
            ++         +   +  K+I +L   R              + Y+I +V +       +
Sbjct: 573  ILR------LHRVEKVPFKEITLLTATRT----RNDAILEAFDQYRIPIVADSGQAHYLE 622

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET----------- 463
             L +  ++   R I +   D + V ++KSP+F+F ED++ +I  Q               
Sbjct: 623  SLEVMVMLDTLRTINNPLHDYALVALMKSPMFDFDEDELARISLQTFPEQKQLPFYHKVQ 682

Query: 464  ---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS- 519
               E   E+         +K ++ +K++      A+  S +D    I   +       + 
Sbjct: 683  LAIEKTAEHANLIDAKLSAKIKNFLKFLSTWRAAAKTSSLYDLLWKIYEDRYYYDYVGAL 742

Query: 520  RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIM 575
              G +    L          E+ S+  L   I+ +++             +A  + V++M
Sbjct: 743  PNGVQRQANLYALTLRANDYEKASFKGLSRFIAMIDKVIENEHDLASVPLAAPKDAVQLM 802

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP------------ 623
            TVH +KGLE   VF+++             + +             +P            
Sbjct: 803  TVHKSKGLEFKYVFILNMDKAFNRKDQSGPIILSRQKGIGFKYIANLPVETENPAAPESI 862

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN----------- 672
            + +         ++  K +T  E  RLLYV MTRA  +L +                   
Sbjct: 863  RLQIETPCYQRNVEETKLATISEQMRLLYVAMTRAELKLYLVGKGWEDKLRDTDWGTSRN 922

Query: 673  -----EKKSNQRTWYDMVYDSFH-------NDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                 EK+    ++ D ++             +         + ++ E +  E  +   +
Sbjct: 923  GKLDPEKRKEWTSYQDWLFAIQDVFTKNTLAYDTRFVTDEDLTPDQLEPLEKEKDSRFDQ 982

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID----------------- 763
               + + E I++ +D  +   +L       I+ P +  PS I                  
Sbjct: 983  LKDIRQSEDIRRALDILENVDRLNQLYAPAIHLPSVRTPSQIKKFYEPVMDANGVQIMDA 1042

Query: 764  ----TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                 K +               G  +H+L+Q +    E        +     A+     
Sbjct: 1043 KLVVPKFELPTFGQEKAVTGAQVGSAVHELMQRVPLEEEITLDTLRQALEQVQAEPAVKA 1102

Query: 820  EYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSG--KINCPKKDIIISGRIDQISISQ 875
              K  L +I    E P+ T           E   +   K     +D ++ G +D   + +
Sbjct: 1103 RIK--LEAILAFYETPLGTLLQKEASRVRREAPFAMLKKDPASGEDFVVRGILDGYVVLE 1160

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              I +F+YKT H+  +    +   +  QL +Y + L+ SY  + +   L+ +  P + ++
Sbjct: 1161 DRILLFDYKTDHY--EVPSQLVERYRDQLDLYAEALRRSYGKEQVEKYLVLLGGPHLEVV 1218


>gi|253751554|ref|YP_003024695.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
            SC84]
 gi|253753455|ref|YP_003026596.1| ATP-dependent exonuclease subunit A [Streptococcus suis P1/7]
 gi|251815843|emb|CAZ51451.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
            SC84]
 gi|251819701|emb|CAR45515.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
            P1/7]
 gi|319757986|gb|ADV69928.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis
            JS14]
          Length = 1216

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 162/985 (16%), Positives = 323/985 (32%), Gaps = 131/985 (13%)

Query: 42   GNPTILKKAQTLQQASQTQCIEERFSLLSSF--FLTQKFTPQKNIITQEINKKSPDLKE- 98
            G+       + +          ++  L+      L      +   +T     K   L   
Sbjct: 268  GSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINNQSRGKGLTNANRPKDEHLIAF 327

Query: 99   -------------KLKKSQDEFIKI-RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
                         +L+    E  ++   +    +     +         +  Y + K K 
Sbjct: 328  KEEYNAGKSQIISELRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKE 387

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
               +F D+      +L++    A IR    ++ + +++DE QD +  Q  ++  L     
Sbjct: 388  AAFEFGDIGHFAIRILEEN---ADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLL----- 439

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  S+    F VGD KQSIY F  A+P     +  + Q       Q   +I L  +F
Sbjct: 440  ------SNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQ----ANPQSGKLILLKENF 489

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS  ++L   + +F+   + Q        T    +   GQ       E     +D Q   
Sbjct: 490  RSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKNEMEYLIYDQQ--- 546

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
              +S  S  D+  +    +     +A  I  +   +             KDI +LV+KR 
Sbjct: 547  --DSANSSTDAEEETPLTAGEIEVVAKEIIRLHNEE---------GADFKDITLLVQKRT 595

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                   L   +   + I +V +         L +  ++   R I +  +D + V +LKS
Sbjct: 596  H----NDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPLNDYALVALLKS 651

Query: 444  PLFNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQ----HVIKYIHELIH 493
            P+F F ED++ +I  Q          E   +   +       K +      +  +     
Sbjct: 652  PMFRFDEDELTRISLQAGTGFFYQKMEIAQQASGQHPELMSEKLKKKITDFLSILENWRA 711

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
             A+  S +D    +   K       +   G++    L        + E+  Y  L   I+
Sbjct: 712  YAKLHSIYDMIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIA 771

Query: 553  ELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVF---------- 598
             +++     K           N V++MT+H +KGLE   VFL++   +            
Sbjct: 772  MIDRALANDKDLADVQEFLPQNAVQLMTIHKSKGLEFKYVFLMNIDKRFNLEDHYQSVII 831

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            S K+   +  +  + D    P+   +         + ++ LK +   E  RLLYV +TRA
Sbjct: 832  SRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQMRLLYVALTRA 891

Query: 659  SDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              +L +    N                     + +  T+ D +                 
Sbjct: 892  EKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKV 951

Query: 703  SINKDEWIAYEWST-------HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             +  ++    +                 + + E I Q +D+    ++L    K  I  P 
Sbjct: 952  FVTDEDLTEEKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPS 1011

Query: 756  ILNPSTIDTKGKT---------------------NLESLLSDNQTFNRGLIIHKLLQVIF 794
            +  PS I    +                         S          G  +H+L+Q + 
Sbjct: 1012 LRTPSQIKKLYEPILEQEGMEVMEKYQPKRTFNLPDFSKKPKITGAQVGSAVHELMQRLD 1071

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVSVS 852
                        +    +A+     +    +  I    +  +    ++     + E   +
Sbjct: 1072 LSWLVTEDTVRAALEAVHAEQAIKDKIN--VQMILDFFDTDLGREILANTDKLHREAPFA 1129

Query: 853  --GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
                 +  +++ ++ G ID   +   +I +F+YKT  +   +   +   + AQ+ +Y + 
Sbjct: 1130 SLQTDSVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKY--DQPIQLSQRYQAQMQLYAEA 1187

Query: 911  LKDSYPNKSLVCLLIYVSEPKVFII 935
            LK +Y    + C LI +   ++ ++
Sbjct: 1188 LKKAYKIDRVDCHLILLGGERIEVV 1212


>gi|125718261|ref|YP_001035394.1| exonuclease RexA, putative [Streptococcus sanguinis SK36]
 gi|251764569|sp|A3CNT9|ADDA_STRSV RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|125498178|gb|ABN44844.1| Exonuclease RexA, putative [Streptococcus sanguinis SK36]
          Length = 1224

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 158/1020 (15%), Positives = 326/1020 (31%), Gaps = 138/1020 (13%)

Query: 15   LIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS-- 71
             I   LW L  F  + +       +       +      L   +++  IEE   +L    
Sbjct: 241  QIKSALWELETFFSAHLEHEGREFAGAKYQENVQDALTVLAGLNESSSIEETAQILKQIV 300

Query: 72   ------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYK 118
                          + +     K  + ++ N+    + E+L+    +  ++     +  +
Sbjct: 301  ALSQLSNGQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQLYQLDFIEQHQDE 360

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                              Y E KK     +F D+     ++L+       +R    +  +
Sbjct: 361  CLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPE---VRRFYQERYH 417

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             +++DE QDT+  Q  ++  L           S  +  F VGD KQSIY F  A+P+   
Sbjct: 418  EVMVDEYQDTNHTQERMLDLL-----------SRGKNRFMVGDIKQSIYRFRQADPQIFS 466

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             + +  Q+       +  +I L  +FRS  ++L   + VF    + +    D   T    
Sbjct: 467  DKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLV 522

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            +    +             + +     + S  S  +   +    ++ A  +   I  +I 
Sbjct: 523  AGNPAKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVSAGEVDLVIKEIIR 575

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLA 417
                     +  +  KDI +L   R        L       ++I +V +D        + 
Sbjct: 576  ------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLVPDDGAANYLQSVE 625

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-- 475
            +  ++   R I +  +D +   +LKSP+F+F ED++ ++  Q  +  +     +K  N  
Sbjct: 626  VLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENLYEKLVNAL 685

Query: 476  ------------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFG 522
                            K QH  + +      ++  S +D    I   +           G
Sbjct: 686  EGRGLNPALVTEELQKKLQHFYETLQSWRTYSKTHSLYDLIWKIYQDRFYYDMVGTLVNG 745

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVH 578
             +    L          E++S+  L   I  +++             +A  + VR+MT+H
Sbjct: 746  AQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPVAAPKDAVRLMTIH 805

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSK 626
             +KGLE   VFL++             + +  +                        +  
Sbjct: 806  KSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVKDSYAPNQLRIS 865

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS--------------- 671
                     +  L+ ++  E  RLLYV MTRA  +L +    +                 
Sbjct: 866  MDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEALDKRQWGKSQQGRL 925

Query: 672  ----NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTP 723
                  + SN + W   + D F ++    + +               +        +   
Sbjct: 926  SASLRSQISNFQDWLYAIQDVFSDENLAYETRFVTDEELTAEEIGRINEPVLFPADDLAD 985

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------------------- 762
              + + I++ +D  +   +L S  ++ I  P +  PS I                     
Sbjct: 986  NRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTDGLDIMDERAA 1045

Query: 763  ---DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                   +       +       G  +H+L+Q I           +        +   A 
Sbjct: 1046 FRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVLRSALAQVQADDAV 1103

Query: 820  EYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQ 875
            + +  L  I    E  +    +  S     E   +   +     ++ ++ G +D   + +
Sbjct: 1104 KKQIQLSKIASFFETDLGRLLIENSDRVRREAPFAMLKRDEASGQEFVLRGILDGYLLFE 1163

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              I +F+YKT  +       +   +  QL +Y + L  SY    +   LI +   ++ ++
Sbjct: 1164 DRIILFDYKTDKYKDSS--ELIARYRGQLDLYAQALSRSYGISQIEKYLILLGGEQLQVV 1221


>gi|289551202|ref|YP_003472106.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis
            HKU09-01]
 gi|289180734|gb|ADC87979.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis
            HKU09-01]
          Length = 1216

 Score =  338 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 139/943 (14%), Positives = 302/943 (32%), Gaps = 128/943 (13%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +    K   L  K++           + +  ++         + K +   + + K+   +
Sbjct: 303  KAYYDKYKSLVSKVQADYFSRSAQDLKRDMQRLAPRVNILADIVKDVITAFGQKKRSRNI 362

Query: 147  LDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            LDF D       +L   D   + I     ++   IL+DE QDT+ +Q +++  +      
Sbjct: 363  LDFADYEHFALQILTNDDGSPSHIAEMYREQFAEILVDEYQDTNRVQEQILSCIKTGSEA 422

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                      LF VGD KQSIY F  A+P   + + +         G     I+L  +FR
Sbjct: 423  -------DGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFNAEGNGTGI---RIDLSQNFR 472

Query: 266  STADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            S  ++L+  + +F     E    +S D    + + +        V+L   + +  +    
Sbjct: 473  SRKEVLSTTNYLFKHMMDEEVGEISYDDAAQLYYGAPFDEVDHPVELRTLIEADKEH--- 529

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVR 381
                          + + +   A  I   + +++    IF    G  R    KDI++L R
Sbjct: 530  -------------SELNGSEQEAEYIVKQVKDILENKRIFDMKTGHYRQPTYKDIVILER 576

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                        +    D+ I    N R    +   ++ +++  R I +   D+  V ++
Sbjct: 577  SFSQARD----LQQAFKDHDIPFHVNSRQGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLM 632

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIA 495
            +S ++ F+ED++  I       +  Y+ I  + N  +       K Q+ I  I      +
Sbjct: 633  RSVIYQFTEDELANIRVFSPNDDYFYQSIVNYINHDLANKKLVKKLQNFIADIKMYQIYS 692

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            Q    +             Q F    G +     L    N  +  E +S+  L + I  +
Sbjct: 693  QSNPVYQLIDKFYHDHYVIQYFSGLIGGKGRRANLYGLFNKAIEFENSSFRGLYQFIRFI 752

Query: 555  EQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++     +     N      N V++MT+H++KGLE P V       +       +++ + 
Sbjct: 753  DELIDRGQDFGEENIVGPNDNVVKMMTIHSSKGLEFPFVIYSGLTREFNKKDLREQVILN 812

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                               +          +K    E  RL+YV +TRA +QLI+     
Sbjct: 813  QKYGLGIDYYDIDKNMAYPSLSSVAYKAITEKEMISEEMRLIYVALTRAKEQLILIGRLK 872

Query: 670  TSNE-----------------KKSNQRTWYDM---VYDSFHNDERVKKIKLTNSINKD-- 707
            ++ +                 ++      +++   +     + E    +   N I     
Sbjct: 873  STKKLEEYEKLAISGSHIAVNERLTAEHPFELIYGILSKHKSYELTPDLMFENDIANLAE 932

Query: 708  -----------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                             E    + +     +     +     +  +     K   P   +
Sbjct: 933  SIRPNVNIIIDYFEDIIEANHQDMNEQRSISDLNTLDTGNDDIKAKITQQLKFKYPNVIN 992

Query: 751  INEPYILNPSTID-TKGKTNLESLLSDNQTFNRGLIIH---KLLQVIFTLPEHKRKNFIT 806
              +P   + S +         ++     + +  G+  +   + ++ +     ++    + 
Sbjct: 993  TTKPSKQSVSELKRQLETEESDTNYDRVRQYRIGVATYERPRFMRHVTKRKANEVGTLMH 1052

Query: 807  ---SYCTKNAKLWPAKEYKNLLL-------------------SITRLLENPMMTTAM-SC 843
                +     +    +  +  +                     I   +++ +      + 
Sbjct: 1053 TVMQHLPFKPERMTEEALEQYIDHLITQQIIEHDAKKDIKFPEIMTFIQSDLYLEIAEAE 1112

Query: 844  DSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTHH-------HV 889
              Y E+           I+   +D+ II G ID I       +  +YKT           
Sbjct: 1113 QIYRELPFVVNQAKVDNISDNHEDVAIIQGMIDLIYKKDNQYYFVDYKTDAFNRRKGMTD 1172

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
             +  E +   +  Q+  Y+  L+    +  +   L +    ++
Sbjct: 1173 EEIGEQLKEKYRIQMQYYKNALETML-HTEVKGSLYFFQFGRL 1214


>gi|163815442|ref|ZP_02206815.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759]
 gi|158449079|gb|EDP26074.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759]
          Length = 1303

 Score =  338 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 154/970 (15%), Positives = 296/970 (30%), Gaps = 136/970 (14%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +   P+K    +        +  +L  +  E  ++  + N         A L L +    
Sbjct: 341  RDADPEKKAFVKNRRDVYKGMITELMSAITEVDEVLGQLNI--TAPVLGALLDLTELYMD 398

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSL 190
               + K    + +F D+      +L       R V +    ++      I IDE QD++ 
Sbjct: 399  ELMKVKMDKNLFEFHDIEEFAFRILCDGIEDGRPVPSKAGREVSLRYREIFIDEYQDSNF 458

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            IQ  ++               +    F VGD KQSIY F  A P   + +    Q+   +
Sbjct: 459  IQEYIL-------GSVAGHGENINNTFMVGDVKQSIYKFRMARPDLFIGKYNTYQRLGDD 511

Query: 251  AGQKF----SIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQ 304
                     + I L  +FRS  ++L  V+ +F         G+  D    +  + +    
Sbjct: 512  DKASADMIGNCIILTRNFRSEINVLRTVNALFEQLMRKEIGGIEYDDAARLNSKYALEDP 571

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             G +      V Q         +  T   D     S A I A+ IA  I  ++  D    
Sbjct: 572  HGRMS-EPGDVYQGPKSELIMIDGDTVSGDMDEDYSCAQIEAKYIANKIHEIVDGDDPMY 630

Query: 365  ----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                +G  R ++  DI++L+R    +  +      +  D  I +           + +  
Sbjct: 631  IHDGDGTVRKVEYSDIVILLRSVSGSATV---FDQVFEDEGIPIYIQSESGYFGAVEVSC 687

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI---------CTQRHETETVYEYIQ 471
            L+++   I +   D     +L+SP+    E+++ +I            R     +Y+ + 
Sbjct: 688  LVSMLSVIDNSYVDGDLAAVLRSPMVGMDEEELARIVGEYRTRYEIDGRDYNVRLYDKLI 747

Query: 472  KFANCGIS---------------------------KFQHVIKYIHELIHIAQFCSPHDFF 504
             +                                 K +  +  +  L     F S  D  
Sbjct: 748  DYLENHDDEGQGECAGLDDMAKSSAAIGDEDKLIGKVRAFVGMLDYLKENKNFMSLSDII 807

Query: 505  TLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              +L          +R  G      +D  +      E+NS   +   I  + +       
Sbjct: 808  RYVLDQTGFYWFVGARPMGRRRQANIDMLIKKADDFEKNS-KGVFNFIRYVNELKTNSLD 866

Query: 564  AHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
               A+      + VR+MT+H +KGLE PV+F+   G         KK+ +          
Sbjct: 867  FAEADIVSDNDDVVRVMTMHKSKGLEFPVLFVAGLGKSFNMKDVQKKVLVHQQYYLTASA 926

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                 + K    + + +   ++     E  R+LYV +TRA ++L +     + ++ K N 
Sbjct: 927  IDADARVKRDTFLRNVMASEMRVENYAEELRVLYVALTRAKEKLYMTGCPKSLDKFKENC 986

Query: 679  R------------------------------TWYDMVYDSFHNDERVKKIKLTNSINKDE 708
                                              + +  +             +  +K E
Sbjct: 987  GIYAIGSEMSSAALINGKSFLSWIYTALSYIDHEEFLDVNEIKSSDFVHTDAVSLTSKTE 1046

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP--------- 759
                       E    E  E I++ +D +          K  I E   L           
Sbjct: 1047 NSDEMEILDETEGLDKEVFEQIRKGIDFRYGHVSSGLKSKMSITEIKKLQAMYDDTEYID 1106

Query: 760  -------STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
                   +   +       S          G + HK++++       +   +        
Sbjct: 1107 MGRERKYAERKSAPAPKFMSGEKTIAGNEIGTVYHKIMELADFRQTTEAGIYADVERIFG 1166

Query: 813  AKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDSY----SEVSVSGKI-----------N 856
              L+     + +    I ++L + +     + D       E      +           +
Sbjct: 1167 LGLFDDGYREKIKADKIVKMLGSSLGQRMAAADLRGDLYRERQFYMMMTPGEILGRSEKD 1226

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
               + I++ G ID   I    I + +YKT        E +   +  QL  Y  +L+    
Sbjct: 1227 KTDETIVVQGIIDAYFIEDGQIVLMDYKTDSVKKS--EELVRKYHVQLDKYADVLEQLTG 1284

Query: 917  NKSLVCLLIY 926
             K +   +IY
Sbjct: 1285 MK-VKEKIIY 1293


>gi|312279028|gb|ADQ63685.1| ATP-dependent helicase/nuclease subunit A [Streptococcus thermophilus
            ND03]
          Length = 1217

 Score =  338 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 142/1020 (13%), Positives = 318/1020 (31%), Gaps = 138/1020 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +   + +  D        +    +  + +    N +           +    +E+    L
Sbjct: 240  DSLKDGLLADFLAFLRDHLGIAQREFAKAKYLNNVSDAIILLEGSLINDQTDMEDLLKQL 299

Query: 70   SSFF-------LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-TYKMFK 121
             +         +T+    +     +  NK   +   +L++   +   +         +  
Sbjct: 300  LTLSGGTGLTNMTRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLAKHNDDILP 359

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                  +     +  Y +AK +    +F D+      +L++      +        + ++
Sbjct: 360  MLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPE---VAVSYRDRYHEVM 416

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QD S  Q  ++  L           S+    F VGD KQSIY F  A+P+    + 
Sbjct: 417  VDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNDKF 465

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRS 299
            ++  +          +I L  +FRS +++L   + VFS   +     +  D T  +   S
Sbjct: 466  QLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGS 521

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             +  +       E ++   D     + E       S  + S        +   I  +   
Sbjct: 522  QKQKEPHPENETEVLIYNSDESSTSEDEEGPDQAISSGEIS-------LVIKEIIKLHEQ 574

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAI 418
                       ++ +DI +L   R               ++ I +V ++ +    + L +
Sbjct: 575  G----------VRFEDITLLAPNRNTYLD----LMVSFEEHGIPLVPDEYKSSYLESLEV 620

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF----- 473
              ++   R I +  +D + V +L+SP+FNF+EDD+ +I  Q  + +   + +        
Sbjct: 621  MIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLTRIAVQADKGQFYDKLLAAHTKSGL 680

Query: 474  -----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVID 527
                      +K     + + +    ++  S +D    I   +             +   
Sbjct: 681  HPEVVMQGLDAKLTLFTETLADWRDYSKCHSIYDLIWKIYNDRFYYDYVGGLPRAEQRQA 740

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKG 582
             L          E+  +  L   I  +++                  N V +MT+H +KG
Sbjct: 741  NLYALALRANAYEKTGFKGLSRFIGMIDKIIASGNDLEEVTDLVP-KNAVSLMTIHKSKG 799

Query: 583  LESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKSRN 629
            LE   VF++    +   H                  +  +  L D     +         
Sbjct: 800  LEFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLET 859

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS------------------ 671
                +  +  ++++  E  RLLYV MTRA  +L +    +                    
Sbjct: 860  LTFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKETLTQKYGTDVENNRLPVA 919

Query: 672  -NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----LER 726
              ++ +  + W   +  +F   +    ++             +       +        +
Sbjct: 920  LRDQIATYQDWIMALDTAFMRKDLKFTVRFVEDEELTPEAIGQVEVKAAVDADDLSNNRQ 979

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT------------------ 768
             E IK+ +   +  +KL       I+ P +  PS +    +                   
Sbjct: 980  TEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQL 1039

Query: 769  ---------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                           +       G   H+L+Q +    +   ++   +            
Sbjct: 1040 LETTTTFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQAL--SRVSADDQV 1097

Query: 820  EYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSG--KINCPKKDIIISGRIDQISISQ 875
            + +  L  +    +  +    ++       E   +   +    K+D ++ G ID   + +
Sbjct: 1098 KARVQLEKLLGFFDTELGKLILANRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLE 1157

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              I +F+YKT          +   +  Q+S+Y K L  +Y    +   LI +    + ++
Sbjct: 1158 DRIVLFDYKTDRFT--HPSELKERYKGQMSLYAKALSQAYQIDKIDKYLILLGGKDLEVV 1215


>gi|68171208|ref|ZP_00544613.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999363|gb|EAM86007.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
          Length = 860

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 195/641 (30%), Positives = 302/641 (47%), Gaps = 41/641 (6%)

Query: 39  METGNPTILKKAQTLQQASQTQCIEER--FSLLSSFFLTQKFTPQKNI---ITQEINKKS 93
           +  G+    K ++ L + S      +    +     F+      +K+I   IT++    S
Sbjct: 222 LSEGSIRDKKISENLVKWSNLSQKYKLQKLNKYVKIFINLPSLEKKSISSIITKKTLTNS 281

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
           P++++ +   Q+E +     F+T K+ + T+  + +AK     Y++ K+K   LD  D+I
Sbjct: 282 PEIEKIVSDIQEEILNFIKTFHTNKIAERTIHLIEIAKCFTKLYQQDKQKLNYLDHNDII 341

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
               +LLK      WI + +D +I+HILIDE QD S+ QW +I  L  +FF G  T    
Sbjct: 342 DLALNLLKNPAYKDWILFHLDSKIDHILIDESQDNSIKQWSIILQLCHEFFSGIGTTEEL 401

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           RTLF VGD KQSIY F  A P           +++T    K  ++ L  SFRST  IL +
Sbjct: 402 RTLFIVGDIKQSIYGFQNARPDYFNPMCHYFTQQSTQY--KHKVLHLTQSFRSTPPILKL 459

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
           VDKVF+        S   TT I H   R    G V++W  +  +++         ++  F
Sbjct: 460 VDKVFNNFCQEISFS---TTKIEHEIFRKNDPGYVEIWPIIDIKNNKN-------FSLDF 509

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           ++     +  +LA  IA  I + I    I    K R I A D L+LVR R     I  + 
Sbjct: 510 ENRTDLDTNLLLASTIANKIHSWIINKRIL-LAKNRPITAGDFLILVRHRTC--FIDHVI 566

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
             LK    I  +  D+F + D+  I+DL+ LG F+L  E+DL+   +LKSP+F F+E  I
Sbjct: 567 TSLK-KLDIPTLERDKFKIMDYTIIQDLVNLGEFLLLPENDLALTGLLKSPIFEFNEKQI 625

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
           F +   R     ++E          SKF  +  Y+ +LI ++Q  SP + +  I+   K 
Sbjct: 626 FDLAYNR-NNTYLWE-------ELQSKFSTISNYLKQLISVSQLHSPLNLYHHIISEHKH 677

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             +F  R G     ++ EF+N  ++ E ++ +SLQ  I  ++   P IK   +   + V+
Sbjct: 678 --KFTKRLGQSNTKIIGEFINLLIQCESHNINSLQAFIHWIKNTNPEIKSDINLTKDYVK 735

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           IMTVH AKG++SP+VFL DT +          +    +                 N+   
Sbjct: 736 IMTVHNAKGMQSPIVFLSDTTT----------IPKSDTQLVFDEEYTPFWIRNDINDFCE 785

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           +L    K +   EY RLLYV MTRA D+L I   S   N+ 
Sbjct: 786 NLKSQQKTNEYNEYLRLLYVAMTRAEDELYITGISPIQNKS 826


>gi|322389861|ref|ZP_08063402.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903]
 gi|321143442|gb|EFX38879.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903]
          Length = 1221

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 162/987 (16%), Positives = 335/987 (33%), Gaps = 118/987 (11%)

Query: 30   DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89
             +     +  + G+ T     + L    +      R S   +     +    K+++T   
Sbjct: 269  YLEAVEEVLDQIGSLTGSVNKEQLTSVLKAVVAISRASNGGALTNRARKEELKDLVTAYN 328

Query: 90   NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLD 148
              K+  +  +L+  +++  ++  +   ++     L+ L    +     Y E K +    +
Sbjct: 329  QDKTIHI-NRLRDLENQLYQLEFQQAFHQEEGPMLSLLRDFIRDFARAYLERKIQEKAYE 387

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F D+      +L++      +R    +  + +++DE QDT+  Q  ++  L         
Sbjct: 388  FGDISHFAIQILEQFPE---VRQAFQERYHEVMVDEYQDTNHTQERMLDLL--------- 435

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
              S+    F VGD KQSIY F  A+P+    + +  Q+     G K  +I L  +FRS  
Sbjct: 436  --SNGHNRFMVGDIKQSIYRFRQADPQIFNDKFKAYQEE----GAKGRLILLKENFRSHV 489

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            ++L   + VF    + +    D   T    +    Q   +         +D   + ++++
Sbjct: 490  EVLDATNDVFRHLMDEEVGEIDYNQTHYLVAGSDKQRMALPQHRAEFLLYDGSQDQEEKT 549

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                 D        +I    I   I  ++         +   +  K+I +L   R     
Sbjct: 550  ----EDEEAALGVETISKGEILLVIKEILR------LHRVEKVPFKEITLLTATRT---- 595

Query: 389  ITFLTRFLKNDYKISVVGNDRFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
                     + Y+I +V +       + L +  ++   R I +   D   V ++KSP+F+
Sbjct: 596  RNDAILEAFDQYQIPIVADSGQAHYLESLEVMVMLDTLRTINNPLHDYPLVALMKSPMFD 655

Query: 448  FSEDDIFKI--------------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
            F ED++ +I                 +   E   E  +       +K ++ +K +     
Sbjct: 656  FDEDELARISLQTLPEQKQVAFYHKVQLALEKTAEQARLIDAKLSAKIKNFLKVLSTWRA 715

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
             A+  S +D    I   +       +   G +    L          E+ S+  L   I+
Sbjct: 716  AAKTSSLYDLLWKIYEDRYYYDYVGALPNGAQRQANLYALTLRANDYEKASFKGLSRFIA 775

Query: 553  ELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
             +++             +A  + V++MTVH +KGLE   VF+++             + +
Sbjct: 776  MIDKVIENEHDLASVPLAAPKDAVQLMTVHKSKGLEFKYVFILNMDKAFNRKDQSGPIIL 835

Query: 609  MPSLNDDPGIPIWIP------------QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                         +P            + +         ++  K +T  E  RLLYV MT
Sbjct: 836  SRQKGIGFKYVASLPVETENPAAPETIRLQIETPCYQRNVEETKLATISEQMRLLYVAMT 895

Query: 657  RASDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFH-------NDE 693
            RA  +L +                        EK+    ++ D ++             +
Sbjct: 896  RAELKLYLVGKGREDKLRDTDWGTSRNGKLDPEKRKEWTSYQDWLFAIQDVFTKNTLAYD 955

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                     + +K E +  E  +   +   + + E I++ +D  +   +L       I+ 
Sbjct: 956  TRFVTDEDLTPDKLEPLEKEKDSRLDQLKDVRQSEDIRRALDILENVDRLNQLYAPAIHL 1015

Query: 754  PYILNPSTID---------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
            P +  PS I                         +               G  +H+L+Q 
Sbjct: 1016 PSVRTPSQIKKFYEPVMDANGVQIMDAKTVTPDFERPTFGQEEAVTGAQVGSAVHELMQR 1075

Query: 793  IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVS 850
            +        +    +     A        K  L +I    E P+ T         + E  
Sbjct: 1076 VPLGEAITLETLRQALEQVQAAPAVKAHIK--LEAILAFFETPLGTLLQREATRVHREAP 1133

Query: 851  VSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
             +   K     +D ++ G +D   + +  I +F+YKT H+  +    +   +  QL +Y 
Sbjct: 1134 FAMLKKDPASGEDFVVRGILDGYVVLEDRILLFDYKTDHY--KVPSQLVERYRDQLDLYA 1191

Query: 909  KILKDSYPNKSLVCLLIYVSEPKVFII 935
            + L+ SY  + +   L+ +  P + ++
Sbjct: 1192 EALRRSYGKEQVEKYLVLLGGPHLEVV 1218


>gi|111657164|ref|ZP_01407943.1| hypothetical protein SpneT_02001617 [Streptococcus pneumoniae TIGR4]
          Length = 1177

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 151/971 (15%), Positives = 311/971 (32%), Gaps = 139/971 (14%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E I + LW L  F    ++      +       +      +   +Q    +   ++L+  
Sbjct: 240  EQIKQALWDLESFFRYHLDNDAKEFAKAAYLENVQLILDEIGSLNQESDSQAYQAVLARV 299

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTYKMFKS-TLASL 127
                K    + +           L +   + +     +  ++ D+       +     + 
Sbjct: 300  VAISKEKNGRALTNASRKADLKPLADAYNEERKTQFAKLGQLSDQIAILDYQERYHGDTW 359

Query: 128  TLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             LAK            Y + K++    +F D+   T ++L+       +R    +  + +
Sbjct: 360  KLAKTFQSFMSDFVEAYRQRKRQENAFEFADISHYTIEILENFP---QVRESYQERFHEV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 417  MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 465

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +   +      Q+  +I L  +FRS++++L+  + VF    + +    +     +   +
Sbjct: 466  FQRYAQ----NPQEGRLIILKENFRSSSEVLSATNDVFERLMDQEVGEINYDNKHQLVFA 521

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                          +         ++ES          E+  +   R +   I  +    
Sbjct: 522  NTKLTPNPDNKAAFLLYDKDDTGEEEES--------QTETKLTGEMRLVIKEILKLHQE- 572

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                    + +  K+I +L   R              ++Y I V  +         L ++
Sbjct: 573  --------KGVAFKEIALLTSSRS----RNDQILLALSEYGIPVKTDGEQNNYLQSLEVQ 620

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
             ++   R I +   D + V ++KSP+F F ED++ ++  Q+ E +      +K  N    
Sbjct: 621  VMLDTLRVIHNPLQDYALVALMKSPMFGFDEDELARLSLQKAEDKVHENLYEKLVNAQKM 680

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                          K +  +  +      A+  S +D    I   +       +   G  
Sbjct: 681  ASSQKGLIHTALAEKLKQFMDILASWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 740

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
                L        + E++++  L   I  ++Q           A +   + V +MT+H +
Sbjct: 741  RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHKS 800

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI--------- 631
            KGLE P VF+++          + ++ +             +      ++          
Sbjct: 801  KGLEFPYVFILNMDQDFNKQDSMSEVILSRQNGLGVKYIAKMETGAVEDHYPKTIKLSIP 860

Query: 632  ---VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
                    + L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 861  SLTYRQNEEELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLESKEYPAAKNGKLNS 920

Query: 676  ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                   N + W   +   F  D+     +             E  T  P          
Sbjct: 921  NTRLQARNFQDWLWAISKVFTKDKLNFSYRFIGEDQLTREAIGELETKSPLQDSSQADNR 980

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + +TIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 981  QSDTIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEIAGQGQSVG 1040

Query: 769  -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                      S          G   H+L+Q I  L +      +T    +          
Sbjct: 1041 KKISFDLPDFSTKEKVTGAEIGSATHELMQRI-DLSQQLTLASLTETLKQ--VQTSQAVR 1097

Query: 822  KNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              + L  I    +  +    ++     Y E   S   +    ++D ++ G +D   + + 
Sbjct: 1098 DKINLDKILAFFDTVLGQEILANTDHLYREQPFSMLKRDQKSQEDFVVRGILDGYLLYEN 1157

Query: 877  NIFIFEYKTHH 887
             I +F+YKT  
Sbjct: 1158 KIVLFDYKTDR 1168


>gi|88658223|ref|YP_507207.1| ATP-dependent DNA helicase UvrD [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599680|gb|ABD45149.1| ATP-dependent DNA helicase, UvrD/Rep family [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 860

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 195/641 (30%), Positives = 302/641 (47%), Gaps = 41/641 (6%)

Query: 39  METGNPTILKKAQTLQQASQTQCIEER--FSLLSSFFLTQKFTPQKNI---ITQEINKKS 93
           +  G+    K ++ L + S      +    +     F+      +K+I   IT++    S
Sbjct: 222 LSEGSIRDKKISENLVKWSNLSQKYKLQKLNKYVKIFINLPSLEKKSISSIITKKTLTNS 281

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
           P++++ +   Q+E +     F+T K+ + T+  + +AK     Y++ K+K   LD  D+I
Sbjct: 282 PEIEKIVSDIQEEILNFIKTFHTNKIAERTIHLIEIAKCFTKLYQQDKQKLNYLDHNDII 341

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
               +LLK      WI + +D +I+HILIDE QD S+ QW +I  L  +FF G  T    
Sbjct: 342 DLALNLLKNPTYKDWILFHLDSKIDHILIDESQDNSIKQWSIILQLCHEFFSGIGTTEEL 401

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           RTLF VGD KQSIY F  A P           +++T    K  ++ L  SFRST  IL +
Sbjct: 402 RTLFIVGDIKQSIYGFQNARPDYFNPMCHYFTQQSTQY--KHKVLHLTQSFRSTPPILKL 459

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
           VDKVF+        S   TT I H   R    G V++W  +  +++         ++  F
Sbjct: 460 VDKVFNNFCQEISFS---TTKIEHEIFRKNDPGYVEIWPIIDIKNNKN-------FSLDF 509

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           ++     +  +LA  IA  I + I    I    K R I A D L+LVR R     I  + 
Sbjct: 510 ENRTDLDTNLLLASTIANKIHSWIINKRIL-LAKNRPITAGDFLILVRHRTC--FIDHVI 566

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
             LK    I  +  D+F + D+  I+DL+ LG F+L  E+DL+   +LKSP+F F+E  I
Sbjct: 567 TSLK-KLDIPTLERDKFKIMDYTIIQDLVNLGEFLLLPENDLALTGLLKSPIFEFNEKQI 625

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
           F +   R     ++E          SKF  +  Y+ +LI ++Q  SP + +  I+   K 
Sbjct: 626 FDLAYNR-NNTYLWE-------ELQSKFSTISNYLKQLISVSQLHSPLNLYHHIISEHKH 677

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             +F  R G     ++ EF+N  ++ E ++ +SLQ  I  ++   P IK   +   + V+
Sbjct: 678 --KFTKRLGQSNTKIIGEFINLLIQCESHNINSLQAFIHWIKNTNPEIKSDINLTKDYVK 735

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           IMTVH AKG++SP+VFL DT +          +    +                 N+   
Sbjct: 736 IMTVHNAKGMQSPIVFLSDTTT----------IPKSDTQLVFDEEYTPFWIRNDINDFCE 785

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           +L    K +   EY RLLYV MTRA D+L I   S   N+ 
Sbjct: 786 NLKSQQKTNEYNEYLRLLYVAMTRAEDELYITGISPIQNKS 826


>gi|55821688|ref|YP_140130.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus LMG
            18311]
 gi|81560167|sp|Q5M2T7|ADDA_STRT2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|55737673|gb|AAV61315.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus LMG
            18311]
          Length = 1217

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 145/1022 (14%), Positives = 321/1022 (31%), Gaps = 147/1022 (14%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L++  G++         ++     Y           + +E          + L +   T 
Sbjct: 254  LRDHLGIA--------QREFAKAKYLNN---VSDAIILLEGSLINDQTDMEDLLKQLLTL 302

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-TYKM 119
                  + +     T+    +     +  NK   +   +L++   +   +         +
Sbjct: 303  SGGTGLTNM-----TRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDI 357

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                    +     +  Y +AK +    +F D+      +L++      +        + 
Sbjct: 358  LPMLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPE---VAVSYRDRYHE 414

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +++DE QD S  Q  ++  L           S+    F VGD KQSIY F  A+P+    
Sbjct: 415  VMVDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFND 463

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRH 297
            + ++  +          +I L  +FRS +++L   + VFS   +     +  D T  +  
Sbjct: 464  KFQLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVA 519

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S +  +       E ++   D     + E       S  + S        +   I  + 
Sbjct: 520  GSQKQKEPHPENETEVLIYNSDESSTSEDEEGPDQAISSGEIS-------LVIKEIIKLH 572

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHL 416
                         ++ +DI +L   R               ++ I +V ++ +    + L
Sbjct: 573  EQG----------VRFEDITLLAPNRNTYLD----LMVSFEEHGIPLVPDEYKSSYLESL 618

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF--- 473
             +  ++   R I +  +D + V +L+SP+FNF+EDD+ +I  Q  + +   + +      
Sbjct: 619  EVMIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLTRIAVQADKGQFYDKLLAAHTKS 678

Query: 474  -------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525
                        +K     + + +    ++  S +D    I   +             + 
Sbjct: 679  GLHPEVVMQGLEAKLTLFTETLADWRDYSKCHSIYDLIWKIYNDRFYYDYVGGLPRAEQR 738

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTA 580
               L          E+  +  L   I  +++                  N V +MT+H +
Sbjct: 739  QANLYALALRANAYEKTGFKGLSRFIGMIDKIIASGNDLEEVTDLVP-KNAVSLMTIHKS 797

Query: 581  KGLESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKS 627
            KGLE   VF++    +   H                  +  +  L D     +       
Sbjct: 798  KGLEFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVL 857

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS---------------- 671
                  +  +  ++++  E  RLLYV MTRA  +L +    +                  
Sbjct: 858  ETLTFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKETLTQQYGTDVENNRLP 917

Query: 672  ---NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----L 724
                ++ +  + W   +  +F   +    ++             +       +       
Sbjct: 918  VALRDQIATYQDWIMALDTAFMRKDLKFTVRFVEDEELTPEAIGQVEVKAAVDADDLSNN 977

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------------- 768
             + E I++ +   +  +KL       I+ P +  PS + T  +                 
Sbjct: 978  RQTEEIERALTVLESVEKLNHLYAPAIDLPSVRTPSQLKTFYEPIMDTEGVDIMDKKEGV 1037

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                             +       G   H+L+Q +        ++   +          
Sbjct: 1038 QPLETASTFELPDFGQKTKVTGAAVGSATHELMQRLTLSDTVTLQDLTQAL--SRVSASD 1095

Query: 818  AKEYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSG--KINCPKKDIIISGRIDQISI 873
              + +  L  +    +  +    ++       E   +   +    K+D ++ G ID   +
Sbjct: 1096 QVKARVQLEKLLGFFDTELGKLILANRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLL 1155

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
             +  I +F+YKT H        +   +  Q+S+Y K L  +Y  + +   LI +    + 
Sbjct: 1156 LEDRIVLFDYKTDHFT--HPSELKTRYQGQMSLYAKALSQAYQMEKVDKYLILLGGKDLE 1213

Query: 934  II 935
            ++
Sbjct: 1214 VV 1215


>gi|55823610|ref|YP_142051.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus
            CNRZ1066]
 gi|81558977|sp|Q5LY80|ADDA_STRT1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|55739595|gb|AAV63236.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus
            CNRZ1066]
          Length = 1217

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 146/1022 (14%), Positives = 321/1022 (31%), Gaps = 147/1022 (14%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L++  G++         ++     Y           + +E          + L +   T 
Sbjct: 254  LRDHLGIA--------QREFAKAKYLNN---VSDAIILLEGSLINDQTDMEDLLKQLLTL 302

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-TYKM 119
                  + +     T+    +     +  NK   +   +L++   +   +         +
Sbjct: 303  SGGTGLTNM-----TRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDI 357

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                    +     +  Y +AK +    +F D+      +L++      +        + 
Sbjct: 358  LPMLELLQSFVLDFSDQYLQAKIQENTFEFSDIAHFAIRILEENPE---VAVSYRDRYHE 414

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +++DE QD S  Q  ++  L           S+    F VGD KQSIY F  A+P+    
Sbjct: 415  VMVDEYQDNSHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFND 463

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRH 297
            + ++  +          +I L  +FRS +++L   + VFS   +     +  D T  +  
Sbjct: 464  KFQLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVA 519

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S +  +       E ++   D     + E       S  + S        +   I  + 
Sbjct: 520  GSQKQKEPHPENETEVLIYNSDESSTSEDEEGPDQAISSGEIS-------LVIKEIIKLH 572

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHL 416
                         ++ +DI +L   R               ++ I +V ++ +    + L
Sbjct: 573  EQG----------VRFEDITLLAPNRNTYLD----LMVSFEEHGIPLVPDEYKSSYLESL 618

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF--- 473
             +  ++   R I +  +D + V +L+SP+FNF+EDD+ +I  Q  + +   + +      
Sbjct: 619  EVMIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLTRIAVQADKGQFYDKLLAAHTKS 678

Query: 474  -------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525
                        +K     + + +    ++  S +D    I   +             + 
Sbjct: 679  GLHPEVVMQGLEAKLTLFTETLADWRDYSKCHSIYDLIWKIYNDRFYYDYVGGLPRAEQR 738

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTA 580
               L          E+  +  L   I  +++                  N V +MT+H +
Sbjct: 739  QANLYALALRANAYEKTGFKGLSRFIGMIDKIIASGNDLEEVTDLVP-KNAVSLMTIHKS 797

Query: 581  KGLESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKS 627
            KGLE   VF++    +   H                  +  +  L D     +       
Sbjct: 798  KGLEFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVL 857

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS---------------- 671
                  D  +  ++++  E  RLLYV MTRA  +L +    +                  
Sbjct: 858  ETLTFQDNRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKETLTQQYGTDVENNRLP 917

Query: 672  ---NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----L 724
                ++ +  + W   +  +F   +    ++             +       +       
Sbjct: 918  VALRDQIATYQDWIMALDTAFMRKDLKFTVRFVEDEELTPEAIGQVEVKAAVDADDLSNN 977

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------------- 768
             + E I++ +   +  +KL       I+ P +  PS + T  +                 
Sbjct: 978  RQTEEIERALTVLESVEKLNHLYAPAIDLPSVRTPSQLKTFYEPIMDTEGVDIMDKKEGV 1037

Query: 769  -----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                             +       G   H+L+Q +        ++   +          
Sbjct: 1038 QPLETASTFELPDFGQKTKVTGAAVGSATHELMQRLTLSDTVTLQDLTQAL--SRVSASD 1095

Query: 818  AKEYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSG--KINCPKKDIIISGRIDQISI 873
              + +  L  +    +  +    ++       E   +   +    K+D ++ G ID   +
Sbjct: 1096 QVKARVQLEKLLGFFDTELGKLILANRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLL 1155

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
             +  I +F+YKT H        +   +  Q+S+Y K L  +Y  + +   LI +    + 
Sbjct: 1156 LEDRIVLFDYKTDHFT--HPSELKTRYQGQMSLYAKALSQAYQMEKVDKYLILLGGKDLE 1213

Query: 934  II 935
            ++
Sbjct: 1214 VV 1215


>gi|328946442|gb|EGG40582.1| exonuclease RexA [Streptococcus sanguinis SK1087]
          Length = 1224

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 150/1035 (14%), Positives = 327/1035 (31%), Gaps = 142/1035 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60
             + F       +  I   LW L  F  + +       +       +      L   ++  
Sbjct: 228  HSDFAAERERIFSQIKSALWELEAFFSAHLEHEGREFAGAKYQENVQDALTVLAGLNELS 287

Query: 61   CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
             IE+   +L                  + +     K  + ++ N+    + E+L+    +
Sbjct: 288  PIEQTAQILKQIVALSQLSNGQSFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQ 347

Query: 107  FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              ++     +  +                  Y E KK     +F D+     ++L+    
Sbjct: 348  LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPE 407

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +R    +  + +++DE QDT+  Q  ++  L           S  +  F VGD KQS
Sbjct: 408  ---VRRFYQERYHEVMVDEYQDTNHTQECMLDLL-----------SRGQNRFMVGDIKQS 453

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--EN 283
            IY F  A+P+    + +  Q+       +  +I L  +FRS  ++L   + VF     E 
Sbjct: 454  IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
               +  + T  +   +    +     L   ++ +   +   ++       D    ++ ++
Sbjct: 510  VGEIDYNETHYLVAGNPAKCEPNPANLASFLIYEGSKESLEEEG------DEGLPQAVSA 563

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                 +   I  +   +          +  KDI +L   R        L       ++I 
Sbjct: 564  GEVDLVIKEIIRLHNEE---------GVAFKDITLLTASRT----RNDLILAAFEQHQIP 610

Query: 404  VVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            +  +D        + +  ++   R I +  +D +   +LKSP+F+  ED++ ++  Q  +
Sbjct: 611  LAPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDLGEDELARLSLQASQ 670

Query: 463  TETVYEYIQKFAN--------------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
              +     +K  +                  K Q+  + +      ++  S +D    I 
Sbjct: 671  EHSQENLYEKLVHALQGRGLNSDLVTQELQKKLQYFHETLQSWRTYSKTHSLYDLIWKIY 730

Query: 509  GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR---- 563
              +           G +    L          E++S+  L   I  +++           
Sbjct: 731  QDRFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASV 790

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-------- 615
              +   + VR+MT+H +KGLE   VFL++             + +  +            
Sbjct: 791  PVATPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGIGIKYVADVS 850

Query: 616  ----PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        +           +  L+ ++  E  RLLYV MTRA  +L +    +  
Sbjct: 851  VSVEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQE 910

Query: 672  -------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
                                 + SN + W   +   F +     + +             
Sbjct: 911  VLDKRQWGKSQQGRLSASLRNQLSNFQDWLYAIQAVFSDKNLAYETRFVTDKELTAEEIG 970

Query: 713  EWST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------ 762
            +          +     + + I++ +D  +   +  S  ++ I  P +  PS I      
Sbjct: 971  QIKEPVLFPADDLADNRQTDDIRRALDILESVDRFNSQYRSAIELPSVRTPSQIKKFYEP 1030

Query: 763  ------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
                                  +       +       G  +H+L+Q I      +    
Sbjct: 1031 IMDTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRITLDS--RPSMA 1088

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKK 860
            +        +   A + +  L  I    E  +    +  S     E   +   +     +
Sbjct: 1089 VLRSALAQVQADEAVKKQIQLSKIASFFETDLGRLLIENSDRVRREAPFAMLKRDEASGQ 1148

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
            + ++ G +D   + +  I +F+YKT  +  +E   +   +  QL +Y + L  SY    +
Sbjct: 1149 EFVLRGILDGYLLFEDRIILFDYKTDKY--KEPSELIARYHGQLDLYAQALSRSYGISQI 1206

Query: 921  VCLLIYVSEPKVFII 935
               LI +   ++ ++
Sbjct: 1207 EKYLILLGGEQLQVV 1221


>gi|291542614|emb|CBL15724.1| recombination helicase AddA, Firmicutes type [Ruminococcus bromii
            L2-63]
          Length = 1186

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 161/1002 (16%), Positives = 319/1002 (31%), Gaps = 137/1002 (13%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER------ 65
            S   I K +W       +       +++   +   LK  + LQ A +   + +       
Sbjct: 200  SETDIEKTVWGKIIIDYALSAVLHGINLTENSILRLKDDEKLQDAVEPLLVGDLAYFTLV 259

Query: 66   --------FSLLSSFFL-------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF--I 108
                    +  +                  + N I   ++    ++KE +KK Q  F   
Sbjct: 260  QLKFVSSSWDEIRQAIFSFETGRMKSPKGYKDNPIKISVSSNRDEVKETVKKLQSLFFWS 319

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            +   R    ++ +      TL +  +    E K K  +L F D+   T  LL K D    
Sbjct: 320  EKDARLELSQLHRFISTLFTLVRAYDKKLSELKAKKNILSFADIESLTVKLLAKPDDDNG 379

Query: 169  I-----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                    +I    + +++DE QD + +Q  + +S++          +    LF VGD K
Sbjct: 380  YTKTVQAQEISNRFDAVMVDEFQDVNDVQDLIFKSVS----------NDESNLFVVGDVK 429

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            QSIY F  A+P+  +  K   ++      +  + I L  +FRS  ++   V+ +F     
Sbjct: 430  QSIYGFRQAKPEIFIERKNEYKRFNEENPEYPATIILDRNFRSRFEVCDAVNFIFERIMT 489

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             +    +  +  R                 V      + +      +             
Sbjct: 490  TESAKMEYNSDERL----------------VNGAEFPKSDDCNFEISLIESENSDLEKEE 533

Query: 344  ILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            I A+ IA  I +MI +     +G   R  +  D  +++R                N+  I
Sbjct: 534  IEAKYIADKIHDMINSGFRVKDGDIMREARYGDFAIILRSPSGKA---ATYVNTLNNSGI 590

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                 ++    D + IK ++ L R I +   D+  + +L SP++ F+ D++         
Sbjct: 591  PAYSENKSSFFDAVEIKIMLNLLRVIDNPGIDIPLLSVLCSPMYAFTPDELAA-MRCESR 649

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              ++Y  + ++A     K +  +  +  L   A   S     +            ++  G
Sbjct: 650  KSSLYSSVCEYA-KTNDKARKFVDELKILRDCACTNSVDALISKACEMTGFMSISLAVSG 708

Query: 523  NE-VIDVLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSANHNEVRIM 575
            N+  +  L+    +    E N Y +L + IS  +             +    + N VR++
Sbjct: 709  NDSALKNLELLREYARSFESNGYKTLSDFISYTDKLIANKTNLDASSQNEGDSANAVRVL 768

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            ++H +KGLE PV F+ D   Q         + +        GI                 
Sbjct: 769  SIHASKGLEFPVCFIADITHQFNKTDLRNDILL--DSKAGLGIKTQSNGVVYNTFPRLAT 826

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------- 680
               ++++   E  R+LYV +TRA ++LI        ++      +               
Sbjct: 827  GLKIEENLIAEEMRVLYVALTRAKEKLICVGAVKKCSDYLERLYSKLVSESVIEPYTVTS 886

Query: 681  ------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW-----------------STH 717
                  W  +      +   ++   +  S         +W                    
Sbjct: 887  CQSYCDWLCLCALVHPSLNNLRNDIMPGSKVIPHNGESDWKLQIIVDEKMIDKDNVFEDD 946

Query: 718  HPENTPLEREETIKQLMDEQKIPKK---LFSPIKNDINEPYILNPSTIDTKGK------- 767
                  L+  +      D  K+ KK        ++ ++ P  ++ S I            
Sbjct: 947  ITSINLLQVADVSDDTFDYAKLLKKNLDFKYRNRDILSLPQKVSASDIAHSQNGDYFEKI 1006

Query: 768  --TNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                L     ++    RG   HK LQ   F          I      N      ++   +
Sbjct: 1007 LSKPLFIAEQNSAPVARGTAHHKFLQYCNFEQARASLDTEIDRLL--NDGKLTQEQVDMI 1064

Query: 825  LLSITR-LLENPMMTTAMSCD-SYSEVSVSGKINC-----------PKKDIIISGRIDQI 871
                    L   ++   ++      E   + ++                 +II G +D  
Sbjct: 1065 DRKTLNEFLSTKLIDRIIASQLVMREKRFTARLKPSEVFDEYKDVKTDATVIIQGAVDLA 1124

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             +    + I +YKT     ++I  +   +  QL +Y+  ++ 
Sbjct: 1125 FVEDGKLVIVDYKTDRV--KDITKLAGLYKKQLDLYKSAMEQ 1164


>gi|325690487|gb|EGD32490.1| exonuclease RexA [Streptococcus sanguinis SK115]
          Length = 1224

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 157/1033 (15%), Positives = 328/1033 (31%), Gaps = 138/1033 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60
             + F       +  I   LW L  F  + +               +      L   ++  
Sbjct: 228  HSDFAAERERIFGQIKSALWELEAFFSAHLEHEGREFVGAKYQENVQDALTALAGLNELP 287

Query: 61   CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
             IEE   +L                  + +     K  + ++ N+    + E+L+    +
Sbjct: 288  SIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQ 347

Query: 107  FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              ++     +  +                  Y E KK     +F D+     ++L++   
Sbjct: 348  LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILERFPE 407

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +     +  + +++DE QDT+  Q  ++  L           S  +  F VGD KQS
Sbjct: 408  ---VHRFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  A+P+    + +  Q+       +  +I L  +FRS  ++L   + VF    + +
Sbjct: 454  IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                D   T    +    +             + +     + S  S  +   +    ++ 
Sbjct: 510  VGEIDYNETHYLVAGNPAKREP-------NPANRASFLIYEGSKESLEEEADEGLPQAVS 562

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A  +   I  +I          +  +  KDI +L   R        L       ++I +V
Sbjct: 563  AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLV 612

Query: 406  GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +D        + +  ++   R I +  +D +   +LKSP+F+F ED++ ++  Q  +  
Sbjct: 613  PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQEH 672

Query: 465  TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +     +KF                    K QH  + + +    ++  S +D    I   
Sbjct: 673  SQENLYEKFVNALEGRGLHPALVTQELQKKLQHFHETLQDWRTYSKTHSLYDLIWKIYQD 732

Query: 511  KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
            +           G +    L          E++S+  L   I  +++             
Sbjct: 733  RFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPV 792

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615
            +A  + VR+MT+H +KGLE   VFL++             + +  +              
Sbjct: 793  AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852

Query: 616  --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671
                      +           +  L+ ++  E  RLLYV MTRA  +L +    +    
Sbjct: 853  VEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEAL 912

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                               + SN + W   +   F ++    + +               
Sbjct: 913  DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972

Query: 715  ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-- 768
            +        +     + + I++ +D  +   +L S  ++ I  P +  PS I    +   
Sbjct: 973  NEPLFFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032

Query: 769  ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                        +       G  +H+L+Q I           + 
Sbjct: 1033 DTDGLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862
                   +   A + +  L  I    E  +    +  S     E   +   + +   ++ 
Sbjct: 1091 RSALTQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDASGQNF 1150

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ++ G +D   + +  I +F+YKT  +       +   +  QL +Y + L  SY    +  
Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELIARYCGQLDLYAQALSRSYGISQIEK 1208

Query: 923  LLIYVSEPKVFII 935
             LI +   ++ ++
Sbjct: 1209 YLILLGGEQLQVV 1221


>gi|325687712|gb|EGD29733.1| exonuclease RexA [Streptococcus sanguinis SK72]
          Length = 1224

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 157/1033 (15%), Positives = 330/1033 (31%), Gaps = 138/1033 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60
             + F       +  I   LW L  F  + +       +       +      L   ++  
Sbjct: 228  HSDFAAERERIFGQIKSSLWELETFFSAHLEHEGREFAGAKYQENVQDALTLLAGLNELS 287

Query: 61   CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
             IEE   +L                  + +     K  + ++ N+    + E+L+    +
Sbjct: 288  SIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347

Query: 107  FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              ++     +  +                  Y E KK     +F D+     ++L++   
Sbjct: 348  LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILERFPE 407

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +R    +  + +++DE QDT+  Q  ++  L           S  +  F VGD KQS
Sbjct: 408  ---VRRFYQERYHEVMVDEYQDTNHTQECMLDLL-----------SRGQNRFMVGDIKQS 453

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  A+P+    + +  Q+       +  +I L  +FRS  ++L   + VF    + +
Sbjct: 454  IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                D   T    +    +             + +     + S  S  +   +    ++ 
Sbjct: 510  VGEIDYNETHYLVAGNPAKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A  +   I  +I          +  +  KDI +L   R        L       ++I +V
Sbjct: 563  AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLV 612

Query: 406  GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +D        + +  ++   R I +  +D +   +LKSP+F+F ED++ ++  Q  +  
Sbjct: 613  PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672

Query: 465  TVYEYIQKFANCG--------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +     +K  N                  K QH  + +      ++  S +D    I   
Sbjct: 673  SQENLYEKLVNAHEGRGLNPALVTQELQKKLQHFHETLQSWRTYSKTHSLYDLIWKIYQD 732

Query: 511  KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
            +           G +    L          E++S+  L   I  +++             
Sbjct: 733  RFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPV 792

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615
            +A  + VR+MT+H +KGLE   VFL++             +    +              
Sbjct: 793  AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIIFSRTKGVGIKYVADVSVS 852

Query: 616  --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671
                      +           +  L+ ++  E  RLLYV MTRA  +L +    +    
Sbjct: 853  VEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEVL 912

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                               + +N + W   +   F ++    + +               
Sbjct: 913  DKRQWGKSQQGRLSASLRSQLNNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972

Query: 715  ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-- 768
            +        +     + + I++ +D  +   +L S  ++ I  P +  PS I    +   
Sbjct: 973  NEPVLFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032

Query: 769  ----------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                        +       G  +H+L+Q I    +++    + 
Sbjct: 1033 DTDGLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRIPL--DNRPSMAVL 1090

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862
                   +   A + +  L  I    E  +    +  S     E   +   +     ++ 
Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKQDEDSGQEF 1150

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ++ G +D   + +  I +F+YKT  +       +   +  QL +Y + L  SY    +  
Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELIARYRGQLDLYAQALSRSYGISQIEK 1208

Query: 923  LLIYVSEPKVFII 935
             LI +   ++ ++
Sbjct: 1209 YLILLGGEQLQVV 1221


>gi|83749759|ref|ZP_00946735.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551]
 gi|207743470|ref|YP_002259862.1| homologous recombinational repair protein, atp-dependent exodnase
            (exonuclease v) beta subunit (contains helicase and
            exonuclease domains) [Ralstonia solanacearum IPO1609]
 gi|83723579|gb|EAP70781.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551]
 gi|206594867|emb|CAQ61794.1| homologous recombinational repair protein, atp-dependent exodnase
            (exonuclease v) beta subunit (contains helicase and
            exonuclease domains) [Ralstonia solanacearum IPO1609]
          Length = 1177

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 160/976 (16%), Positives = 325/976 (33%), Gaps = 81/976 (8%)

Query: 1    LKNRFGLSLNESY--ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA-- 56
            L +  G   +     E +          +VS        +       I   A   +    
Sbjct: 227  LDDLLGDDAHTDPLIEALQDAALLADMLRVSAWLGQGGAAEGKRAVQIETAATAARALDL 286

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIR 111
            S      + F  L + F TQ   P+    T+ + K   +     L +      +      
Sbjct: 287  SDAAARHDAFETLFTAFHTQAGKPRACKPTKALVKAIGEGNAQTLVDLHGTLCEALAAYH 346

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
             R +  ++     A  TL   L   Y+  K++   +DF DL      L++  D +A+++ 
Sbjct: 347  ARRHESRVRAINAALFTLGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQV 406

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            ++D    H+L+DE QDT+ +QW ++    + +  G     +  T+F VGD KQSIY F  
Sbjct: 407  RLDARYKHLLLDEFQDTNPMQWRIL----QGWLRGYEGTGTRPTVFLVGDPKQSIYRFRR 462

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A+ +     + +            +++    + R+   +L  V+ VF            +
Sbjct: 463  ADARLFDAARDMLVAGF-----DATVLRTNRTRRNAPAVLEWVNAVFLQARARGDY---A 514

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                +  +        + L    V +             +       +S      R++A 
Sbjct: 515  IYAEQSTAVDAPAGQALLLPLVPVPEAVQTGETAPRDSLTEPREEAGDSQRYDEGRQVAA 574

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             +  +   + +  NG +R ++  D  +LVR+++         R    D  +  +   R  
Sbjct: 575  CLRALHAGERVRENGGERPVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGG 630

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYEY 469
            L   L   DL AL  F+++ + DL    +L+SP+F  ++DD+  +    +     T +E 
Sbjct: 631  LLATLEALDLCALLDFLMTPQADLPLAHVLRSPIFAVTDDDLIALAQTGEGASAPTWWER 690

Query: 470  IQKFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGN 523
            +   A    +    +H  + +   + +A     HD    I+   + ++++  R       
Sbjct: 691  LTALAGQPHAAAQLRHAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANRE 750

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRA---------------- 564
            + +  LD FL   L  +   Y SL + ++EL                             
Sbjct: 751  QALANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDAIDA 810

Query: 565  --HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
               S   + V+I+TVH +KGLE+P V L+D+            +       + P      
Sbjct: 811  ELASEGLDAVQILTVHASKGLEAPFVVLLDSHHSDTRADTAGILIDWLPGAEAPAHFSAF 870

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             ++  R      L        + E   LLYV MTRA   LI+   +N  +          
Sbjct: 871  GKTAERGRARDPLFAQEAALAERENWNLLYVAMTRARQALIVSGVANKRDG--------- 921

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                       +V        ++         +T    +     +               
Sbjct: 922  --------AAAQVVDEGDVPEVDGSASWYTLLATAGVASPAPAAQADAGGDAVHAGPQAV 973

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKR 801
             +   +  +     +  +        N    + D     +G ++H +L+ +       + 
Sbjct: 974  SYHDFRVPLTVTVRIGGTAERVADAPNAADAIFDQGAVAQGELLHAVLERLTRHGKPEQV 1033

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
             +         A      +      ++ R+L    +        +       ++  P   
Sbjct: 1034 PDAAAIARWFGATGITDADAARAAEAVRRMLAAEALAHVFDAARFDVAHNEVELFSPDGA 1093

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
            ++   RID++      + + +YK    +P E       +  QL  Y   +   YP +++ 
Sbjct: 1094 LL---RIDRLIERGDEVLVVDYKL-RLLPVE----RAAYADQLRGYVAAVAPMYPGRTVR 1145

Query: 922  CLLIYVSEPKVFIIPQ 937
               +  ++ +   +  
Sbjct: 1146 AG-VATAQGEWIDLDA 1160


>gi|312867393|ref|ZP_07727602.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis F0405]
 gi|311097094|gb|EFQ55329.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis F0405]
          Length = 1221

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 161/989 (16%), Positives = 331/989 (33%), Gaps = 122/989 (12%)

Query: 30   DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89
             +     +  + G+ T     + L    +      R S   +     +    K+++T   
Sbjct: 269  YLEAVEEVLDQIGSLTGRINKEQLTSVLKAVVAISRASNGGALTNRARKEELKDLVTAYN 328

Query: 90   NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLD 148
              K+  +  +L+  +++  ++  + + ++     L+ L    +     Y E K +    +
Sbjct: 329  QDKTIHI-NRLRDLENQLYQLEFQQSFHQEEGPMLSLLRDFIRDFARAYLERKIQEKAYE 387

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F D+      +L++      +R    +  + +++DE QDT+  Q  ++  L         
Sbjct: 388  FGDISHFAIQILEQFPE---VRQAFQERYHEVMVDEYQDTNHTQERMLDLL--------- 435

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
              S+    F VGD KQSIY F  A+P+    + +  Q+     G K  +I L  +FRS  
Sbjct: 436  --SNGCNRFMVGDIKQSIYRFRQADPQIFNDKFKAYQEE----GAKGRLILLKENFRSHV 489

Query: 269  DILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            ++L   + VF     E    +  + T  +   S +          E ++         + 
Sbjct: 490  EVLDATNDVFRHLMDEEVGEIDYNQTHYLVAGSDKQRIAFPQHRAEFLLYDGSQDQEEKT 549

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
            E   +            +L   +   I  +              +  K+I +L   R   
Sbjct: 550  EDEEAPLGVETISKGEILL---VIKEILRLHR---------VEKVPFKEITLLTATRT-- 595

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                       + Y I +V +       + L +  ++   R I +   D   V ++KSP+
Sbjct: 596  --RNDAILEAFDQYHIPIVADSGQAHYLESLEVMVMLDTLRTINNPLHDYPLVALMKSPM 653

Query: 446  FNFSEDDIFKI--------------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            F+F ED++ +I                 +   E   E+        ++K ++ +K +   
Sbjct: 654  FDFDEDELARISLQTLPEQKQVAFYHKVQLALEKTAEHANLIDAKLLAKIENFLKVLSTW 713

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
               A+  S +D    I   +       +   G +    L          E+ S+  L   
Sbjct: 714  RAAAKTHSLYDLLWKIYEDRYYYDYVGALPNGAQRQANLYALTLRANDYEKASFKGLSRF 773

Query: 551  ISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            I+ +++             +A  + V++MTVH +KGLE   VF+++             +
Sbjct: 774  IAMIDKVIENEHDLASVPLAAPKDAVQLMTVHKSKGLEFKYVFILNMDKAFNRKDQSGPI 833

Query: 607  HIMPSLNDDPGIPIWIP------------QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +             +P            + +         ++  K +T  E  RLLYV 
Sbjct: 834  ILSRQKGLGFKYVANLPVETENPAAPESIRLQIETPCYQRNVEETKLATISEQMRLLYVA 893

Query: 655  MTRASDQLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFH-------N 691
            MTRA  +L +                         K+    ++ D ++            
Sbjct: 894  MTRAELKLYLVGKGREDKLRDTDWGTSRNGKLDPGKRKEWTSYQDWLFAIQDVFTKNTLA 953

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
             +         + ++ E +  E  +   +   + + E I++ +D  +   +L       I
Sbjct: 954  YDTRFVTDEDLTPDQLEPLEREKDSRLDQLKDIRQSEDIRRALDILENVDRLNQLYAPAI 1013

Query: 752  NEPYILNPSTID---------------------TKGKTNLESLLSDNQTFNRGLIIHKLL 790
            + P +  PS I                       + +               G  +H+L+
Sbjct: 1014 HLPSVRTPSQIKKFYEPVMDANGVQIMDAKTVTPEFELPTFGQEKAVTGAQVGSAVHELM 1073

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSE 848
            Q +    E        +     A+       K  L +I    E P+ T           E
Sbjct: 1074 QRVPLEEEITLDTLRQALEQVQAEPAVKARIK--LEAILAFYETPLGTLLQKEASRVRRE 1131

Query: 849  VSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
               +   K     +D ++ G +D   + +  I +F+YKT H+       +   +  QL +
Sbjct: 1132 APFAMLKKDPASGEDFVVRGILDGYLVLEDRILLFDYKTDHYKV--PSQLVERYRDQLDL 1189

Query: 907  YEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            Y + L+ SY  K +   L+ +  P + ++
Sbjct: 1190 YAEALRRSYGKKQVEKYLVLLGGPHLEVV 1218


>gi|312863341|ref|ZP_07723579.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396]
 gi|311100877|gb|EFQ59082.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396]
          Length = 1217

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 154/1023 (15%), Positives = 325/1023 (31%), Gaps = 146/1023 (14%)

Query: 13   YELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
             + +  D      F    +       +       +      L+ A      +     L  
Sbjct: 243  KDGLLADFLA---FLRDHLGLAQREFAKAKYLNNVSDAISLLEGALAN--DQTDMEDLLK 297

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY------------KM 119
              LT         +T+  +++    KE   K+++EF+      +T              +
Sbjct: 298  QLLTLSGGTGLTNMTRPKDEELKAYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDI 357

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                          +  Y +AK +    +F D+      +L++      +  +     + 
Sbjct: 358  LPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEENPE---VAVRYRDRYHE 414

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +++DE QD S  Q  ++  L           S+    F VGD KQSIY F  A+P+    
Sbjct: 415  VMVDEYQDNSHTQERMLELL-----------SNGYNRFMVGDIKQSIYRFRQADPQIFNG 463

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRH 297
            + ++  +          +I L  +FRS +++L   + VFS   +     +  D T  +  
Sbjct: 464  KFQLFLE----NPDAGKLILLKENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVA 519

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S +  +       E ++   D       E       S  + S        +   I  + 
Sbjct: 520  GSEKQKEPHPENETEVLIYNSDEASVTPDEEGADQPISSGEIS-------LVIKEIIKLH 572

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHL 416
                         ++ +DI +L   R               ++ I +V ++ +    + L
Sbjct: 573  EQG----------VRFEDITLLAPTRNTYLD----LMASFEEHGIPLVPDEYKSSYLESL 618

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
             +  ++   R I +  +D + V +L+SP+FNF+EDD+ +I  Q  + +   + +      
Sbjct: 619  EVMIMLDTLRAINNPLNDYALVALLRSPMFNFNEDDLARIAVQDDKGQFYDKLLAAHTKS 678

Query: 477  G----------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525
            G           +K     + + +    +++ S +D    I   +       S     + 
Sbjct: 679  GLHPEVVTQGLDTKLTLFTETLVDWRDYSKWHSLYDLIWKIYDDRFYYDYVGSLPRAEQR 738

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELE----QYPPTIKRAHSANHNEVRIMTVHTAK 581
               L          E+  +  L   I  ++          + A     N V +MT+H +K
Sbjct: 739  QANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVADLVPKNAVSLMTIHKSK 798

Query: 582  GLESPVVFLVDTGSQVFSHKHI-------------KKMHIMPSLNDDPGIPIWIPQSKSR 628
            GLE   VF++    +   H                  +  +  L D     +        
Sbjct: 799  GLEFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGLGIKYLADLKDQVNTNLPKLNVVLE 858

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS----------------- 671
                 +  +  ++++  E  RLLYV MTRA  +L +    +                   
Sbjct: 859  TLTFQENRREERRASISEEMRLLYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPV 918

Query: 672  --NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI----AYEWSTHHPENTPLE 725
               ++ +  + W   +  +F   +    ++   +             + +    + +   
Sbjct: 919  ALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELIPEAIGQVEVQAAVDADDLSNNR 978

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
            + E IK+ +   +  +KL       I+ P +  PS + T  +                  
Sbjct: 979  QTEEIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKTFYEPVMDTEGVDIMYKKEEVQ 1038

Query: 769  ----------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
                            +       G   H+L+Q +        ++   +           
Sbjct: 1039 PLETTTSFELPDFGQKTKVTGAAVGSATHELMQRLILSDTVTLQDLTQAL--SRVSADDQ 1096

Query: 819  KEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISIS 874
             + +  L  +    +  +    +        E   +   +    K+D ++ G ID   + 
Sbjct: 1097 VKARVQLEKLLGFFDTELGKLILVNRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLL 1156

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
            +  I +F+YKT H        I   +  Q+S+Y K L  +Y    +   LI +    + +
Sbjct: 1157 EDRIVLFDYKTDHFT--YPSEIKERYTGQMSLYAKALSQAYQIDKIDKYLILLGGKNLEV 1214

Query: 935  IPQ 937
            +  
Sbjct: 1215 VEA 1217


>gi|228995666|ref|ZP_04155329.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17]
 gi|228764043|gb|EEM12927.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17]
          Length = 747

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 124/726 (17%), Positives = 232/726 (31%), Gaps = 133/726 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++   L            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  D +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKERNIDPKKFDPRSILSGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          LA  +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKQISIADPFEKLASDVYTEYQKRLLKNNSLDFDDLIMTTIHLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ ++  L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNRAQYILVNKLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIENNSNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDEIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGIKFYDRKEIKDILAYLRLIANPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +   + +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVMDEIEHVGVSAKITKAVKEFASQLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF++     VF H                                   
Sbjct: 566 TMHSAKGLEFPVVFIIGLEEGVFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
              +++   +E  RL YVG+TRA ++L +      +   ++N       + +        
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTNMNAASRFISEIPTELLEP 651

Query: 696 KKIKLT 701
                 
Sbjct: 652 LNETAP 657


>gi|94311069|ref|YP_584279.1| DNA helicase/exodeoxyribonuclease V subunit A [Cupriavidus
            metallidurans CH34]
 gi|93354921|gb|ABF09010.1| UvrD/REP helicase [Cupriavidus metallidurans CH34]
          Length = 1187

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 179/995 (17%), Positives = 325/995 (32%), Gaps = 103/995 (10%)

Query: 1    LKNRFGLSLNES--YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
            L    G         + +  D W     Q++ +      + +     I+   + ++    
Sbjct: 226  LAQDLGDDATSDILVDALCDDDWLEECAQMALLLGRGGKTEQGHASKIIDGLRAIRAWRD 285

Query: 59   TQCIEER-----FSLLSSFFLTQKFTPQKNIITQEINK------KSPDLKEKLKKSQDEF 107
                        F LL + F T    P+    T  + K         +L ++  +     
Sbjct: 286  AGAAPGEAAANAFQLLRAAFFTDAGKPRSLRRTTALAKVCGSEGAVDELLDQHAEHCARL 345

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +I  R     +    LA   L   L   Y+  K     +DF DL      L+   + + 
Sbjct: 346  DEIAARRCEAMVLAINLALYRLGDALLERYQRHKGDQRAMDFADLEWLAAKLMADEETAT 405

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +++ ++D    H+L+DE QDT+ +QW ++    + +  G        T+F VGD KQSIY
Sbjct: 406  YLQVRLDARYRHLLLDEFQDTNPLQWRIL----QGWLAGYQGLGEKPTVFLVGDPKQSIY 461

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F  A+ +     + + Q        + +            ++L  V+ VF         
Sbjct: 462  RFRRADARLFDAARVMLQDGFGATVLRTNRTRRN-----RPEVLDWVNAVFDHARAEGRY 516

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ----ESSAS 343
                T T        G  G V L   V  +        +        + P+    +S   
Sbjct: 517  PLYETQTTALG----GPAGPVWLLPLVEPEEAEDDEASEGDGHRDTLTQPRTQKGDSLRY 572

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
               RR+A  +  +     +      R    +D+ +LVR++          R       I 
Sbjct: 573  EEGRRVAAWLHYLRDQVPVREGDGTRPAGWRDMHLLVRRKTFLADYERAMRE----AGIP 628

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
             +   R  L   L   DL AL  F+++ E DL    +LKSPL   ++DD+  +     E 
Sbjct: 629  CLSPRRGGLLTTLEALDLSALLAFLMTPESDLDLAHVLKSPLVGATDDDLVLLAMMEGEG 688

Query: 464  ETVYEYIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI---- 518
                               +  +  +   + +A     HD    I    + R+++     
Sbjct: 689  GWWARIEALGLPERVSDSLRTGVARLRGWLALAPHKPVHDLVDQIYHQGEVRRRYAEAAP 748

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY--------------------- 557
            +    +V+  LD FL  +L  +   Y SL + I EL++                      
Sbjct: 749  AAIREQVLANLDAFLKLSLDLDGGRYPSLPKFIDELQEIRRGDEDESPDEGGMGEGVEDT 808

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                  A     + V I+TVH AKGLE+P V L+D      +      +   P  +  P 
Sbjct: 809  EAESDDAADNQLDAVHILTVHAAKGLEAPFVILLDANHSDPAADRGGILVDWPPTSAVPR 868

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                  +   R    + L          E   LLYV MTRA   L++      +++ +  
Sbjct: 869  HFSAYGKRDERGMARAPLFDAEAALADRENWNLLYVAMTRAQQGLLVSGIKGRASKAEKE 928

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                 ++             ++L  +   DE  AY  +     +T     E I+      
Sbjct: 929  DAPGAEI--------AGSWYVRLAAAGVGDEITAYPETDVAAVDTLTAASERIRYTDFRL 980

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
            +        +  D                    E ++ D      G ++H LL+ +   P
Sbjct: 981  RYRDAADDRLPID--------------DADDEAEGIVFDADAAAHGELVHALLERVSRYP 1026

Query: 798  EHK----RKNFITSYC------TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
            +          +  +         NA+    ++ +  +  +  +LE P +   M      
Sbjct: 1027 DAHGSLPDVETVLRWFPLTGAGAPNARERWRQQAEAAVADLRAMLEAPALRELMFPVDAV 1086

Query: 848  EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                  ++   +  ++   RID++    + + I +YK    +PQE       +  QL  Y
Sbjct: 1087 SARNEVELYDGRGRLL---RIDRLVEFDERVVIIDYKL-RLLPQEHA----GYRTQLLRY 1138

Query: 908  EKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
               +   +P K +      V+      I    L  
Sbjct: 1139 AAAVAPMFPGKRIEAG---VATAAGEWIDVELLRA 1170


>gi|148543293|ref|YP_001270663.1| recombination helicase AddA [Lactobacillus reuteri DSM 20016]
 gi|184152703|ref|YP_001841044.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112]
 gi|227364360|ref|ZP_03848453.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
            MM2-3]
 gi|325683559|ref|ZP_08163075.1| exonuclease RexA [Lactobacillus reuteri MM4-1A]
 gi|251764530|sp|A5VHK2|ADDA_LACRD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|251764531|sp|B2G532|ADDA_LACRJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|148530327|gb|ABQ82326.1| Recombination helicase AddA [Lactobacillus reuteri DSM 20016]
 gi|183224047|dbj|BAG24564.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112]
 gi|227070673|gb|EEI09003.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
            MM2-3]
 gi|324977909|gb|EGC14860.1| exonuclease RexA [Lactobacillus reuteri MM4-1A]
          Length = 1392

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 157/1071 (14%), Positives = 308/1071 (28%), Gaps = 167/1071 (15%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            ++  E    +                  +            +  Q L    Q        
Sbjct: 338  IAKEELLTELTTFSDQFTDLLSKATESQLDAKTVDSLQKDQQMMQELLDLLQPPTWNTIR 397

Query: 67   SLLSSFFLTQKFTPQKN-----IITQEINKKSPDLKEKLKKSQDEFIKIRD---RFNTYK 118
             L ++    +     K+      + + +      +K++  +  D F   R+   R  +  
Sbjct: 398  DLFANAKFARMGGKPKDDELAEEVYKSLGSARTGIKKQFDQLVDRFFNYREDQFRLISTH 457

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR---YKIDQ 175
              +       +       Y++ K    VL+F DL      +L   D     +     +  
Sbjct: 458  AQELLRELSAVTINFRRRYQQTKLNRHVLEFSDLEHYAYAILTPPDDQPNWQTLVKDLQN 517

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                I+IDE QDT+ +Q  ++  LT             + LF VGD KQSIY F  A+P 
Sbjct: 518  HYQEIMIDEYQDTNRLQESILMKLTS---------PERKNLFMVGDVKQSIYRFREADPT 568

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTT 293
              L + +  ++     G     I L  +FRS  ++ +  + +F    +     +  D   
Sbjct: 569  LFLGKYQNYRQ-----GSDGEAIVLGENFRSMTNVTSFTNILFEQLMDREVGEIDYDEDA 623

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             +++ ++   +    ++    V  +D+     ++      D   ++   +   R I   I
Sbjct: 624  HLKYAATYYEENQDNKVHPTEVLLYDANALDPEK-----EDVEHEDDKLAGEFRMIGMRI 678

Query: 354  SNMIGTDTI---FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+    +     +G+   IQ  DI++L R +     I        N   I +  +D  
Sbjct: 679  KQMVENQELIFHPEDGQMHPIQYGDIVLLERTKA----INNSLMEEFNKLNIPLTVHDVE 734

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
                   ++ +M+L + I + + D+  V +L+SP+   +  ++  I  Q    +      
Sbjct: 735  SYFQATEVRVMMSLLKIIDNPQQDIPLVAVLRSPIVGLTNQELAFIRLQNRSVDYYAALQ 794

Query: 471  QKFANCGISKFQH------------------VIKYIHELIHIAQFCSPHDFFTLILGAKK 512
               +N      +H                   +  +      AQ  +  D    I     
Sbjct: 795  TFMSNYQRKALRHQSLLTSEQVNALYEKADHFLGLLRVFRQTAQQQTLVDLIWQIYDQTG 854

Query: 513  GRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--- 568
                      G++    L          EQ+S+  L + I  +E+     K    A    
Sbjct: 855  YLDYVGAMPGGHQRQANLHALYQRAHSYEQSSFKGLYQFIRFIEKMQEHDKDLGVAPTQL 914

Query: 569  -HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              N V +MT+H +KGL+ PVVFL+D           +   +                   
Sbjct: 915  TANTVNVMTIHGSKGLQFPVVFLIDATHGFNKGAARENAVVDAVAGVGIRYMDDQRVIYD 974

Query: 628  RN---NIVSDLIKHLKKSTQE--------------------EYNRLLYVGMTRAS-DQLI 663
                  ++ ++ +  +                         E  R   +  +     +  
Sbjct: 975  TPQRQAVIEEIQRGERAEDLRVLYVALTRAEQRLVITGSFNEEMRTQSLAGSWQRWQKAY 1034

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK-------IKLTNSINKDEWIAYEWST 716
              K+     + +    ++ D V  +                + L  S   D  +    + 
Sbjct: 1035 QSKNLLIGPQPRITANSFMDWVGLALARYPEFNAQQLSRGNVTLEESTLADTKVTGLAAD 1094

Query: 717  HH---------------------PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             H                           E+  T+     EQKI + L     + +    
Sbjct: 1095 PHFTAKTYTALDVSDGLAKIGQNASANVTEKNNTVATDASEQKIEQILRYRYPHLVATKT 1154

Query: 756  ILNPSTIDTKGKTNLESLLS----------------------------------DNQTFN 781
                S  D K                                            +     
Sbjct: 1155 TAYQSVTDVKRVFEDPDTRDMARWDYDQQQKVKTQGIYLNNNFDVPAFIQQTTHEPVATE 1214

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLS-ITRLLENPMMT 838
             G   H + Q +          F+     K    KL        +    I    +  +  
Sbjct: 1215 IGTATHLVFQKLPLDEGLINVEFVDQEIQKLVGEKLINPVVAARINREGIVAFYQTAVGQ 1274

Query: 839  TAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFIFEYKTH 886
              +    D + EV  S  +N             + I+I G ID    + + I + +YK  
Sbjct: 1275 KILKHPADYHREVPFSMIMNGHELFKGVNVSDDERILIHGIIDGYLRTDEGIILVDYKND 1334

Query: 887  HHVPQ----EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
            H        ++  I   +  QL +Y++ L        +   L  +   +  
Sbjct: 1335 HLNKDYRDFDLARIKDRYRGQLELYKEALNLMEGIPVVQMGLYLLELGEFV 1385


>gi|324993970|gb|EGC25889.1| exonuclease RexA [Streptococcus sanguinis SK405]
          Length = 1224

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 158/1033 (15%), Positives = 327/1033 (31%), Gaps = 138/1033 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60
             + F       +  I   LW L  F  + +       +       +      L   ++  
Sbjct: 228  HSDFAAERERIFGQIKSALWELGAFFSAHLEHEGREFAGAKYQENVQDALTALAGLNELS 287

Query: 61   CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
             IEE   +L                  + +     K  + ++ N+    + E+L+    +
Sbjct: 288  PIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347

Query: 107  FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              ++     +  +                  Y E KK     +F D+     ++L+    
Sbjct: 348  LYQMDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE 407

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +R+   +  + +++DE QDT+  Q  ++  L           S  +  F VGD KQS
Sbjct: 408  ---VRHFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  A+P+    + +  Q+       +  +I L  +FRS  ++L   + VF    + +
Sbjct: 454  IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                D   T    +    +             + +     + S  S  +   +    ++ 
Sbjct: 510  VGEIDYNETHYLVAGNPSKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A  +   I  +I          +  +  KDI +L   R        L       Y+I +V
Sbjct: 563  AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQYQIPLV 612

Query: 406  GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +D        + +  ++   R I +  +D +   +LKSP+F+F ED++ ++  Q  +  
Sbjct: 613  PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672

Query: 465  TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +     +K                     K QH  + +      ++  S +D    I   
Sbjct: 673  SQENLYEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732

Query: 511  KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
            +           G +    L          E++S+  L   I  +++             
Sbjct: 733  RFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDLASVPV 792

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615
            +A  + VR+MT+H +KGLE   VFL++             + +  +              
Sbjct: 793  AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852

Query: 616  --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671
                      +           +  L+ ++  E  RLLYV MTRA  +L +    +    
Sbjct: 853  VEESYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVL 912

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                               + SN + W   +   F ++    + +               
Sbjct: 913  DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972

Query: 715  ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762
            +        +     + + I + +D  +   +L S  ++ I  P +  PS I        
Sbjct: 973  NEPVLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032

Query: 763  ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                +       +       G  +H+L+Q I           + 
Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862
                   +   A + +  L  I    E  +    +  S     E   +   + +   ++ 
Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDASGQNF 1150

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ++ G +D   + +  I +F+YKT  +       +   +  QL +Y + L  SY    +  
Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELIARYHGQLDLYAQALSRSYGISQIEK 1208

Query: 923  LLIYVSEPKVFII 935
             LI +   ++ ++
Sbjct: 1209 YLILLGGEQLQVV 1221


>gi|116510847|ref|YP_808063.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus lactis
            subsp. cremoris SK11]
 gi|123025697|sp|Q033I1|ADDA_LACLS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|116106501|gb|ABJ71641.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus lactis
            subsp. cremoris SK11]
          Length = 1203

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 161/1032 (15%), Positives = 308/1032 (29%), Gaps = 150/1032 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----------ILKKAQTLQ 54
            G    +S   + +D        +    + +  S+  G              IL     L 
Sbjct: 207  GFETYKSLTDLSEDFTVNVKENLLTFFELLENSLTNGVIAKKGAGRDKANLILDNKNELL 266

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112
            +A   +      +L  S     +    K+     + K     K+ L  S+ +  ++R   
Sbjct: 267  EAISKKDFVTFTALFLSIDTDIRVGSSKDETLSALKKDFSAQKQDLVGSKSKPGELRKFV 326

Query: 113  ---------RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                          + F+               Y E KK     ++ D+     ++L++ 
Sbjct: 327  DKIKHGQLIEKYQKQAFEIASDLQKFIIEFYKTYLERKKNENAFEYSDIAHFAIEILEEN 386

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                 IR  + +  + I+IDE QDTS  Q  ++  L           S+   LF VGD K
Sbjct: 387  PD---IRENLREHYDEIMIDEYQDTSHTQERMLELL-----------SNGHNLFMVGDIK 432

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            QSIY F  A+P   L + +   +          +I L  +FRS  ++L   + +F    +
Sbjct: 433  QSIYGFRLADPGLFLEKYKSYDQA----ENPNQLIRLKENFRSRGEVLNFTNDIFKHLMD 488

Query: 284  AQGLSEDSTTTIRHRSSRIGQ---VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             +                I           + +++   ++    + E          +  
Sbjct: 489  EKLGEMTYGKEKALVQGNISDYPVEAEKDFYPELLLYKENTSEEEIED--------SEVK 540

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
             +    +  A  I  +I +           ++ KDI +LVR + +   I  +       Y
Sbjct: 541  ISDGEIKGAAQEIKKLIESG----------VEPKDIAILVRSKSNNNKIEDIL----LSY 586

Query: 401  KISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I V+    R      + +  ++ + R I +   DLS V ML+SPLF F+ED++ +I  Q
Sbjct: 587  DIPVILDEGRVDFLKSMEVLIMLDILRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISVQ 646

Query: 460  RHETETVYEYIQKFANCG-----------ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                   ++ I                    K +   +   E   +      H     I 
Sbjct: 647  GSRDLRFWDKILLSLKKEGKNPELINLSLEQKLKAFNQKFTEWRKLVNQIPIHRLLWKIY 706

Query: 509  GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIKR 563
                      + + G      L          E + Y  L + +      +EQ       
Sbjct: 707  TETYYFDYVGALKNGEMRQANLQALSVRAESYESSGYKGLFKFVRLINKFMEQNNDLASV 766

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  N VR+MT H +KGLE   VFL++  S+       + + +             + 
Sbjct: 767  NIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSREHGLGMKYIADLK 826

Query: 624  QSKSRNNIVSDL------------IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                        +++   E  R+LYV  TRA  +L +      +
Sbjct: 827  AEPDVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKDT 886

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIK-------------------------LTNSINK 706
            ++K   +      +     +D+     +                            +   
Sbjct: 887  DKKAGLELYDTATLEGKILSDKFRNSSRGFQHWILALQNATKLPMKLNVYTKDELETEKL 946

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
            +     ++     E+   +   +    + E +       P +       I  PS +  + 
Sbjct: 947  EFTSQPDFKKLVEESEKFDNIMSFSDEIKEAQKIMNYQYPHQAATELSSIQTPSQVKKRS 1006

Query: 767  KTNL---------------------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
                                     +           G   H  +Q         + +  
Sbjct: 1007 YEKQLQVGEVQPVSEFVRVKNLDFSDFGSKKITAAEIGSATHSFMQYADFS----QADLF 1062

Query: 806  TSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKK 860
            +   T +   +  K    + +  I  L +             +  E   S        K+
Sbjct: 1063 SFQATLDEMGFDEKIKNQIDITKILTLFDTEFGKFLSENVDKTVKEAPFSMLRTDEFAKE 1122

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
              I+ G  D        I +F+YKT        I  I   +  Q+++Y + L+ +Y    
Sbjct: 1123 QYIVRGICDGFVKIADKIILFDYKTDRFTNVSAISEIKERYKDQMNLYSEALQKAYHVNQ 1182

Query: 920  LVCLLIYVSEPK 931
            +   LI +  P+
Sbjct: 1183 IDKYLILLGGPR 1194


>gi|17545909|ref|NP_519311.1| hypothetical protein RSc1190 [Ralstonia solanacearum GMI1000]
 gi|17428204|emb|CAD14892.1| probable homologous recombinational repair protein, atp-dependent
            exodnase (exonuclease v) beta subunit (contains helicase
            and exonuclease domains) [Ralstonia solanacearum GMI1000]
          Length = 1177

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 160/958 (16%), Positives = 330/958 (34%), Gaps = 82/958 (8%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
              +  D+  +  +                  T +  A+ L   S        F  L + F
Sbjct: 247  AALLADMLRVSGWLGQG--GAAEGKRAVQIETAVTAARAL-DLSDAAARRHAFEALFTAF 303

Query: 74   LTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             TQ   P+    T+ + K   +     L +      +     + R +  ++     A  T
Sbjct: 304  HTQAGKPRACKPTKALVKAIGEDAAQTLADLHAVLCEALAVYQARRHESRVRAINAALFT 363

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            L   L   Y+  K++   +DF DL      L++  D +A+++ ++D    H+L+DE QDT
Sbjct: 364  LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            + +QW ++    + +  G     +  T+F VGD KQSIY F  A+ +     + +     
Sbjct: 424  NPMQWRIL----QGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADARLFEAARDMLVAAF 479

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +++    + R+   +L  V+ VF +          +  +    +     VG  
Sbjct: 480  -----DATVLRTNRTRRNAPAVLEWVNAVFLLARARGDYPIYAEQSTAVDAP----VGRA 530

Query: 309  QLWEQVVSQHDSQCNP-QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             L   V     +Q +        +       +S      R++A  +  +   + +  NG 
Sbjct: 531  LLLPLVPVPEAAQADETAPRDSLTEPREEAGDSQRYDEGRQVAACLRALHAGERVRENGA 590

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +R ++  D  +LVR+++         R    D  +  +   R  L   L   DL AL  F
Sbjct: 591  ERPVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDF 646

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEYIQKFANCGISK--FQH 483
            +++ + DL    +L+SP+F  ++DD+  +          T +E +   A+   +   ++ 
Sbjct: 647  LMTPQADLPLAHVLRSPIFAVTDDDLIALAQAGEGASAPTWWERLAALADRPHAAAQWRR 706

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRN 539
              + +   + +A     HD    I+   + ++++  R       + +  LD FL   L  
Sbjct: 707  AHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANREQALANLDAFLKLALDL 766

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANH---------------------NEVRIMTVH 578
            +   Y SL + ++EL       +                            + V+I+TVH
Sbjct: 767  DGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDAIDAELASEGLDAVQILTVH 826

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE+P V L+D+         +  +   P   + P       ++  R      L   
Sbjct: 827  ASKGLEAPFVVLLDSHHSDTRADTVGILIDWPPGAEAPAHFSAFGKAAERGRARDPLFAQ 886

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 + E   LLYV MTRA   LI+   +N  +                    + V + 
Sbjct: 887  EATLAERENWNLLYVAMTRARQALIVSGVANKRDG----------------AAAQAVDEG 930

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
             + +      W     +       P+E                  +   +  +     + 
Sbjct: 931  DVPDVDGSASWYTLLATAGAATPAPVEAAAGAGGADHAAS-QAVAYHDFRVPLTVTVRIG 989

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP 817
             +        +    + D     +G ++H +L+ +       +  +         A    
Sbjct: 990  GAVERVADAPDTADAIFDQGAVAQGELLHAVLERLTRHGKPEQVPDAAAIARWFGATGIT 1049

Query: 818  AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN 877
              +      ++ R+L    +        +       ++  P   ++   RID++      
Sbjct: 1050 DADAARATEAVRRMLAAEALAHVFDPARFDVAHNEVELFSPDGALL---RIDRLIERGDE 1106

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            + + +YK    +P E       +  QL  Y   +   YP +++    +  ++ +   +
Sbjct: 1107 VLVVDYKL-RLLPVE----RAAYADQLRGYAAAVAPIYPGRAVRAG-VATAQGEWIDL 1158


>gi|206968237|ref|ZP_03229193.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134]
 gi|228950847|ref|ZP_04112970.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068047|ref|ZP_04201355.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185]
 gi|229077650|ref|ZP_04210280.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2]
 gi|229188562|ref|ZP_04315601.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876]
 gi|206737157|gb|EDZ54304.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134]
 gi|228594751|gb|EEK52531.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876]
 gi|228705591|gb|EEL57947.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2]
 gi|228715055|gb|EEL66922.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185]
 gi|228808776|gb|EEM55272.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 753

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 120/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + ++ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNVDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     ++  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|229176883|ref|ZP_04304279.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W]
 gi|228606556|gb|EEK63981.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W]
          Length = 749

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 120/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + ++ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNVDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     ++  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|229003295|ref|ZP_04161125.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4]
 gi|228757913|gb|EEM07128.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4]
          Length = 747

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 123/726 (16%), Positives = 231/726 (31%), Gaps = 133/726 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++   L            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  D +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKERNIDPKKFDPRSILSGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKQISIADPFEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIHLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ ++  L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNRAQYILVNKLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIENNSNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDEIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGIKFYDRKEIKDILAYLRLIANPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +   + +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVMDEIEHVGVSAKITKAVKEFASQLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF++     VF H                                   
Sbjct: 566 TMHSAKGLEFPVVFIIGLEEGVFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
              +++   +E  RL YVG+TRA ++L +      +   ++N       + +        
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTNMNAASRFISEIPTELLEP 651

Query: 696 KKIKLT 701
                 
Sbjct: 652 LNETAP 657


>gi|225870333|ref|YP_002746280.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp. equi
            4047]
 gi|225699737|emb|CAW93495.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi
            subsp. equi 4047]
          Length = 1213

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 152/1015 (14%), Positives = 326/1015 (32%), Gaps = 129/1015 (12%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             +++ + +   +           +               K  + L+           F  
Sbjct: 237  PDQAVDALLACMQDTADQLRDLTDMEGYAQTTKAGKLTAKYTKHLKMIDSLYEWALHFDS 296

Query: 69   LSS-FFLTQKFTPQKNIITQEIN-KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L     L Q       ++    +   +       K  Q++ ++ R         + +L  
Sbjct: 297  LYGKARLGQLAQELTALLPSGADITVAGHKYPIFKSLQEQLVRFRHLETILAYQQESLPL 356

Query: 127  LTLAKYLN----AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            L + +         Y  AK +    +F D+     ++L++   +  IR       + +++
Sbjct: 357  LEVLQAFVISFSEAYLAAKMQENAFEFSDIAHFAIEILQQ---APDIRQAYQGHYHEVMV 413

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+P+   ++ +
Sbjct: 414  DEYQDNNHMQERLLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              Q    +      +I L  +FRS +++L V + VFS   +            +  +   
Sbjct: 463  DYQSNPEH----GKLILLKENFRSQSEVLNVTNAVFSRLMDESLGEITYDDKHQLVAGSE 518

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
            GQ          +  +D+    +        D +            +A  I  +   +  
Sbjct: 519  GQRQPYPNNRAQLLLYDTDQVQEGTEEALANDGISAGEVI-----LVAKEIIRLYNEE-- 571

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421
                    +  +DI +LV  R     I  +     N Y I  V    +      + +  +
Sbjct: 572  -------KVAFEDITLLVSSRTRNDTIFQVF----NQYGIPLVADGGQENYLKSVEVMVM 620

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA------- 474
            +   R I +  +D + V +++SP+F+F ED + +I  Q    +    +  K +       
Sbjct: 621  LDTLRSINNPLNDYALVALMRSPMFSFDEDQLARISLQGSSQKQPQAFYDKLSNSLRGQG 680

Query: 475  -------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVI 526
                      ++K       + +    A+  S ++    I   +       S+    +  
Sbjct: 681  EHPELIGQELMTKLADFDGTLRDWRQFAKLHSLYELIWKIFNDRFYFDFVASQPKAEQAQ 740

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              L        + EQ+ Y  L   I      LE              + V +MT+H +KG
Sbjct: 741  ANLYALAIRADQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVERPKHAVNLMTIHKSKG 800

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-----------IWIPQSKSRNNI 631
            LE   VF+++   +         + +                      +   +       
Sbjct: 801  LEFHYVFILNCDKRFAMADLQAPIILNRDEGIGIKYVANVKELLREEKLASLKVTMETLP 860

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------------SN 672
                 + L+ +T  E  RLLYV MTRA  ++ +   ++                    S 
Sbjct: 861  YQLNKQQLRLATLSEQMRLLYVAMTRAEKKVYLIGKASKEKVQEKTADNSSEGRLALASR 920

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLEREE 728
            E+  + + W   +  +F  ++    ++  +  +       +          +     + E
Sbjct: 921  ERLLSFQDWLLAIAATFSKEDLFIDVRFVDDSDLTPEAVGQLRPSGLLQADDLKDNRQTE 980

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768
             I + +D      +L +  +  I  P +  PS + T  +                     
Sbjct: 981  DIARALDMLDKVSELNASYQAAIELPTVRTPSQLKTLYEPLMDTDGVDIIDQPYHRPKTF 1040

Query: 769  --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-L 825
                 S     +    G  +H+L+Q I    +    +   +          A+    L +
Sbjct: 1041 ELPDFSKKKAVEPSQVGSSLHELMQRIPMSDQVTAGDIEQTL---QLVSADAEVKARLDI 1097

Query: 826  LSITRLLENPMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFI 880
              +T       +   +       + E   +   K +  ++  ++ G ID   + +  I +
Sbjct: 1098 EKVTSFFATTELGQLLQEHHQRLHREAPFAMLKKDSLSQEQYVVRGIIDGYLLFEDRIVL 1157

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            F+YKT  +  Q+   +   +  Q+ +Y + L  SY    +   L+ +   ++ ++
Sbjct: 1158 FDYKTDRY--QQSAELKQRYQQQMDLYAEALSQSYGIARIEKYLVLMGGSQLEVV 1210


>gi|207723138|ref|YP_002253537.1| homologous recombinational repair protein, atp-dependent exodnase
            (exonuclease v) beta subunit (contains helicase and
            exonuclease domains) [Ralstonia solanacearum MolK2]
 gi|206588331|emb|CAQ35294.1| homologous recombinational repair protein, atp-dependent exodnase
            (exonuclease v) beta subunit (contains helicase and
            exonuclease domains) [Ralstonia solanacearum MolK2]
          Length = 1177

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 160/976 (16%), Positives = 324/976 (33%), Gaps = 81/976 (8%)

Query: 1    LKNRFGLSLNESY--ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA-- 56
            L +  G   +     E +          +VS        +       I   A   +    
Sbjct: 227  LDDLLGDDAHTDPLIEALQDAALLADMLRVSAWLGQGGAAEGKRAVQIETAATAARALDL 286

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIR 111
            S      + F  L + F TQ   P+    T+ + K   +     L +      +      
Sbjct: 287  SDAAARHDAFETLFTAFHTQAGKPRACKPTKALVKAIGEGSAQTLVDLHGTLCEALAAYH 346

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
             R +  ++     A  TL   L   Y+  K++   +DF DL      L++  D +A+++ 
Sbjct: 347  ARRHESRVRAINAALFTLGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQV 406

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            ++D    H+L+DE QDT+ +QW ++    + +  G     +  T+F VGD KQSIY F  
Sbjct: 407  RLDARYKHLLLDEFQDTNPMQWRIL----QGWLRGYEGTGTRPTVFLVGDPKQSIYRFRR 462

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A+ +     + +            +++    + R+   +L  V+ VF            +
Sbjct: 463  ADARLFDAARDMLVAGF-----DATVLRTNRTRRNAPAVLEWVNAVFLQARARGDY---A 514

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                +  +        + L    V +             +       +S      R++A 
Sbjct: 515  IYAEQSTAVDAPAGQALLLPLVPVPEAVQTGETAPRDSLTEPREEAGDSQRYDEGRQVAA 574

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             +  +   + +  NG +R ++  D  +LVR+++         R    D  +  +   R  
Sbjct: 575  CLRALQAGERVRENGDERPVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGG 630

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYEY 469
            L   L   DL AL  F+++ + DL    +L+SP+F  ++DD+  +    +     T +E 
Sbjct: 631  LLATLEALDLCALLDFLMTPQADLPLAHVLRSPIFAVTDDDLIALAQTGEGASAPTWWER 690

Query: 470  IQKFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGN 523
            +   A    +    +H  + +   + +A     HD    I+   + ++++  R       
Sbjct: 691  LTALAGQPHAAAQLRHAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANRE 750

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRA---------------- 564
            + +  LD FL   L  +   Y SL + ++EL                             
Sbjct: 751  QALANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDAIDA 810

Query: 565  --HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
               S   + V+I+TVH +KGLE+P V L+D+            +       + P      
Sbjct: 811  ELASEGLDAVQILTVHASKGLEAPFVVLLDSHHSDTRADTAGILIDWLPGAEAPAHFSAF 870

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             ++  R      L        + E   LLYV MTRA   LI+   +N  +   +      
Sbjct: 871  GKTAERGRARDPLFAQEAALAERENWNLLYVAMTRARQALIVSGVANKRDGAAAQAVDEG 930

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            D+                              +T    +     +               
Sbjct: 931  DVPEVDGSASWY-----------------TLLATAGVASPAPAAQADAGGDAVHAGPQAV 973

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKR 801
             +   +  +     +  +        N    + D     +G ++H +L+ +       + 
Sbjct: 974  SYHDFRVPLTVTVRIGGTAERVADAPNAADAIFDQGAVAQGELLHAVLERLTRHGKPEQV 1033

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
             +         A      +      ++ R+L    +        +       ++  P   
Sbjct: 1034 PDAAAIARWFGATGITDADAARAAEAVRRMLAAEALAHVFDAARFDVAHNEVELFSPDGA 1093

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
            ++   RID++      + + +YK    +P E       +  QL  Y   +   YP +++ 
Sbjct: 1094 LL---RIDRLIERGDEVLVVDYKL-RLLPVE----RAAYADQLRGYVAAVAPMYPGRTVR 1145

Query: 922  CLLIYVSEPKVFIIPQ 937
               +  ++ +   +  
Sbjct: 1146 AG-VATAQGEWIDLDA 1160


>gi|228989471|ref|ZP_04149456.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM 12442]
 gi|228770196|gb|EEM18775.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM 12442]
          Length = 747

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 124/726 (17%), Positives = 232/726 (31%), Gaps = 133/726 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++   L            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  D +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKERNIDPKKFDPRSILSGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKQISIADPFEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIHLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ ++  L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNRAQYILVNKLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIENNSNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDEIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGIKFYDRKEIKDILAYLRLIANPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +   + +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVMDEIEHVGVSAKITKAVKEFASQLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +     A   EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPAAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF++     VF H                                   
Sbjct: 566 TMHSAKGLEFPVVFIIGLEEGVFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
              +++   +E  RL YVG+TRA ++L +      +   ++N       + +        
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTNMNAASRFISEIPTELLEP 651

Query: 696 KKIKLT 701
                 
Sbjct: 652 LNETAP 657


>gi|227543760|ref|ZP_03973809.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
            CF48-3A]
 gi|300908827|ref|ZP_07126290.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112]
 gi|227186259|gb|EEI66330.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri
            CF48-3A]
 gi|300894234|gb|EFK87592.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112]
          Length = 1392

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 160/1071 (14%), Positives = 307/1071 (28%), Gaps = 167/1071 (15%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            ++  E    +                  +            +  Q      Q        
Sbjct: 338  IAKEELLTELTTFRDQFTALLSKATESQLDAKTVDSLQKDQQMMQEFLDLLQPPTWNTIR 397

Query: 67   SLLSSFFLTQKFTPQKN-----IITQEINKKSPDLKEKLKKSQDEFIKIRD---RFNTYK 118
             L ++    +     K+      + + +      +K++  +  D F   R+   R  +  
Sbjct: 398  DLFANAKFARMGGKPKDDELAEEVYKSLGSTRTGIKKQFDQLVDRFFNYREDQFRLISTN 457

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR---YKIDQ 175
              +       +       Y++ K    VL+F DL      +L   D     +     +  
Sbjct: 458  AQELLRELSAVTINFRRRYQQTKLNRHVLEFSDLEHYAYAILTPPDDQPNWQTLVKDLQN 517

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                I+IDE QDT+ +Q  ++  LT             + LF VGD KQSIY F  A+P 
Sbjct: 518  HYQEIMIDEYQDTNRLQESILMKLTS---------PERKNLFMVGDVKQSIYRFREADPT 568

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTT 293
              L + +  ++     G     I L  +FRS  ++ +  + +F    +     +  D   
Sbjct: 569  LFLGKYQNYRQ-----GNDGEAIVLGENFRSMTNVTSFTNILFEQLMDREVGEIDYDEDA 623

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             +++ ++   +    ++    V  +D+             D   ++   +   R I   I
Sbjct: 624  HLKYAATYYEENQDNKVHPTEVLLYDANALD-----PEKEDVEHEDDKLAGEFRMIGMRI 678

Query: 354  SNMIGTDTI---FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              M+    +     +G+   IQ  DI++L R +     I        N   I +  +D  
Sbjct: 679  KQMVENQELIFHPEDGQMHPIQYGDIVLLERTKA----INNSLMEEFNKLNIPLTVHDVE 734

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
                   ++ +M+L + I + + D+    +L+SP+   +  ++  I  Q    +      
Sbjct: 735  SYFQATEVRVMMSLLKIIDNPQQDIPLAAVLRSPIVGLTNQELAFIRLQNRSVDYYAALQ 794

Query: 471  QKFANCGISKFQH------------------VIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                N       H                   +  +      AQ  +  D    I     
Sbjct: 795  SFMGNYQRKALHHQSLLTSEQVSALYEKADHFLGLLRVFRQTAQQQTLVDLIWQIYDQTG 854

Query: 513  GRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--- 568
                      G++    L          EQ+S+  L + I  +E+     K    A    
Sbjct: 855  YLDYVGAMPGGHQRQANLHALYQRAHSYEQSSFKGLYQFIRFIEKMQEHDKDLGVAPTQL 914

Query: 569  -HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP------SLNDDPGIPIW 621
              N V +MT+H +KGL+ PVVFL+D           +   +           DD  +   
Sbjct: 915  TANTVNVMTIHGSKGLQFPVVFLIDATHGFNKGAVRENTVVDAVAGVGIRYMDDQRVIYD 974

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEE-----YNRLLYVGMTRASDQ---LIICKHSNT--- 670
             PQ ++    +    +                RL+  G      +   L+          
Sbjct: 975  TPQRQAVIEEIQRGERAEDLRVLYVALTRAEQRLIITGSFNEEMRTQSLVGSWQRWQKAY 1034

Query: 671  -------SNEKKSNQRTWYDMVYDSFHNDER-----------------VKKIKLTNSINK 706
                     + +    ++ D V  +                       +   K+T     
Sbjct: 1035 QSKNLLIGPQPRITANSFMDWVGLALARYPEFNAQQLSRGNVTLEKSTLADTKVTGLAAD 1094

Query: 707  DEWIAYEWSTHH-----------PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
              +IA  ++                    E+  T+     EQKI + L     + +    
Sbjct: 1095 PHFIAKTYTALDVSDGLAKIGQNASANVTEKNNTVATDASEQKIDQILRYRYPHLVATKT 1154

Query: 756  ILNPSTIDTKGKTNLESLLS----------------------------------DNQTFN 781
                S  D K                                            +     
Sbjct: 1155 TAYQSVTDVKRVFEDPDTRDMARWDYDQQQRVKTQGIYLNNNFDVPAFIQQTTHEPVATE 1214

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKN-AKLWPAKEYKNLLLS--ITRLLENPMMT 838
             G   H + Q +          F+     K   K          +    I    +  +  
Sbjct: 1215 IGTATHLVFQKLPLDEGPINVEFVDQEIQKLVGKKLINPVVAARINRKGIVDFYQTEVGQ 1274

Query: 839  TAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFIFEYKTH 886
              +    D + EV  S  +N             + I+I G ID    + + I + +YKT 
Sbjct: 1275 KILKHPADYHREVPFSMIMNGHELFKGVNVSDDERILIHGIIDGYLKNDEGIVLVDYKTD 1334

Query: 887  HHVPQ----EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
            H        ++  I   +  QL +Y++ L        +   L  +   +  
Sbjct: 1335 HLNKDYRDFDLARIKDRYRGQLELYKEALNLMEGIPVVQMGLYLLELGEFV 1385


>gi|15893037|ref|NP_360751.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7]
 gi|15620238|gb|AAL03652.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7]
          Length = 822

 Score =  334 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 173/621 (27%), Positives = 297/621 (47%), Gaps = 39/621 (6%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              F T+    +K+++++E+ +K P L  +L+K   E  ++ +     ++   T     L
Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL  +    W+ +K++ EINHIL+DE QDTS
Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW +I +L  +F   +       ++F VGD+KQSI+SF GA+ +         +   T
Sbjct: 357 PSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           NA +KF  I L  S+RS  +IL     V    ++       S   +   SS     G+V 
Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPGLFLSNNPL--ISSFRTHQGSVT 471

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W  V S+       ++  W    D    +S+A +L  +I   I   I ++ I  +   R
Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESEEILPSTAHR 526

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KD ++LVRKR +    +       +  K+ V  +DR  L ++L I DL++L +F+L
Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +DDL+   +LKSP+   SE  ++++   + E               +S  + +   + 
Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYELLVNKSENS---------LWDILSSHEEIYNKLD 633

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            LI I +     +FF L++     R+ +     ++  D+++E L  +     +  +SLQ 
Sbjct: 634 SLIEIYKISIVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKNYANDIDNSLQG 689

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++  E     IKR    + +++R+MTVH +KGLE+P+V L D+ +   S          
Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLEAPIVILCDSTTLPISSNKF------ 742

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             + DD G   +   +      + +L +  K    +EY RLLYV MTRA D+LIIC    
Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798

Query: 670 TSNEKKSNQRTWYDMVYDSFH 690
            SN+  + +  WY++   +  
Sbjct: 799 -SNKSTTPENCWYEIAKQTCD 818


>gi|326803610|ref|YP_004321428.1| putative ATP-dependent nuclease subunit A [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650337|gb|AEA00520.1| putative ATP-dependent nuclease subunit A [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 919

 Score =  334 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 151/932 (16%), Positives = 295/932 (31%), Gaps = 135/932 (14%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEIN 178
           ++   A + L +      +    +   LDF+ + + T  +L                   
Sbjct: 6   YRLAAAIVYLCQLFIDRMQAEMFEEKQLDFQAIELYTYQILSPTDPDKNEALLYYQSRFK 65

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +++DE QD + +Q  +I++++++              F VGD KQSIY F  A+PK  +
Sbjct: 66  EVMVDEYQDVNGLQEAIIQAVSQEDRSY--------NRFMVGDVKQSIYRFRYADPKLFM 117

Query: 239 REKRI---NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            + +      ++     +    I L  +FRS  +IL+ V+ VFS   + +    D  +  
Sbjct: 118 DKYQRYANFDEQTPPFEEPSYRINLAENFRSRPEILSFVNFVFSQLMDEKIGGVDYLSEG 177

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
           +               +    + +     + E +    DS  + S   + A  IA  I++
Sbjct: 178 QLSVGATWYP------DLEGYETEVLLVEENEDYRQSLDSNQELSRTELQAEVIAQKITS 231

Query: 356 MIGTDTIFSNG------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           ++       +       K R +   DI++L   R            +   Y I ++ + +
Sbjct: 232 LMQKGFKIYDKDATSEDKMRPLCYSDIVILGSNRT----FYQDLENIFTQYDIPIMQDKK 287

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE- 468
                   I  ++ L + I +   D+    +L+SP+   +E ++ KI     E       
Sbjct: 288 QNYFQRTEIMTMVGLLKLIDNPYQDIPLAAVLRSPIIGLTEPEMAKIRIAEREGTYFEAV 347

Query: 469 ------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRF 521
                 +  +  N  ++K Q ++ ++       +  S       I               
Sbjct: 348 QSYVESHQNEKDNDLLNKLQQLLDWLQFWRSFTKEHSIAQLIWQIYQDTGYLDYVSGMTN 407

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMT 576
           G +    L          E+N +  L + I  +E     +      +    N N V++MT
Sbjct: 408 GLQRESNLHGLYKRAYDFEENQFRGLFQFIRFIEKMQEREKDLESPQTIDLNQNTVQLMT 467

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           VH +KGLE PVVF  +            ++ I   +     +          N I     
Sbjct: 468 VHASKGLEFPVVFYFNMAKGFNVDDLKNELLINDQIGIGVKVRDRFNGISYSNPIRLLAE 527

Query: 637 KHLKKSTQEEYNRLLY------------VGMTRASDQLIICKHSNTSNEKKSN------- 677
            + +     E  R LY            VG T A D+         +  +K+        
Sbjct: 528 HYERLELSAEEQRKLYVALTRAEQKLYLVGATEARDKSFDQWIKWANLSQKNQVIDESLR 587

Query: 678 -----QRTWYDMVYDSFHNDERVK--------------------KIKLTNSINKDEWIAY 712
                       +  +       +                     I++ N        A+
Sbjct: 588 AISNQSDNIQKWIGTAIARHPDFRNKSHYDQAPQSSYQSVTTDFHIQVVNEEELLTHTAF 647

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI-----------------KNDINEPY 755
           +     PE   +E E    +++        L+                    + +     
Sbjct: 648 QNIQLAPEKASVEGENAQTEIISSPLDYDYLYQEASQTSSYQSVSELKRLFEEPEDGRQM 707

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNR------------GLIIHKLLQVIFTLPEHKRKN 803
               S   ++    L    S                   G  +H LLQ +         +
Sbjct: 708 QWRYSNSQSEAVQGLRFTPSHYPAPEFIQSQAVHSPSEHGSAVHLLLQAMDLKAMPSFDS 767

Query: 804 FITSYCTKNAKLWPAK--EYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKIN--- 856
              SY    AK    +    +  L  +    E PM    +      Y E   S  +    
Sbjct: 768 LSESYKDLVAKGLLEESSLSEADLQQLLAFFETPMGKRIIHPKSQVYREQPFSYLLPYRQ 827

Query: 857 -------CPKKDIIISGRIDQISISQ-QNIFIFEYKTHH----HVPQEIEHIPYTHIAQL 904
                   P   ++I G ID   I +   +++F+YKT H       ++ + +   +  Q+
Sbjct: 828 LKSSTGLTPNDKVLIHGIIDGFLIDENDQVWLFDYKTDHIGYLPAKEQRQTLLKRYRVQM 887

Query: 905 SIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
           S+Y+K L      + +   +LI +   + F++
Sbjct: 888 SLYKKALTSIL-ERPVDYAVLIALDSLETFLV 918


>gi|2909716|gb|AAC12966.1| exonuclease RexA [Lactococcus lactis subsp. cremoris MG1363]
          Length = 1173

 Score =  334 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 157/1011 (15%), Positives = 302/1011 (29%), Gaps = 138/1011 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ-QASQTQCIEE 64
            G    +S   + +D        +    + +    +    T      ++          +E
Sbjct: 207  GFETYKSLTDLSEDFTVNVKENLLTFFELLEAISKKDFVTCTALFLSIDTDIRVGSSKDE 266

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
              S L   F  QK     +       +K  D          +  ++ +++   + F+   
Sbjct: 267  ALSALKKDFSAQKQDLVGSKSKPGELRKFVDKI--------KHGQLIEKYQN-QAFEIAS 317

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                        Y E KK     ++ D+     ++L++      IR  + +  + I+IDE
Sbjct: 318  DLQKFIIDFYKTYLERKKNENAFEYSDIAHFAIEILEENPD---IRENLREHYDEIMIDE 374

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDTS  Q  ++  L           S+   LF VGD KQSIY F  A+P   L + +  
Sbjct: 375  YQDTSHTQERMLELL-----------SNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKSY 423

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
             +          +I L  +FRS  ++L   + +F    + +                I  
Sbjct: 424  DQA----ENPNQLIRLKENFRSRGEVLNFTNDIFKHLMDEKLGEMTYGKEEALVQGNISD 479

Query: 305  ---VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                     + +++   ++    + E          +   +    +  A  I  +I    
Sbjct: 480  YPVEAEKDFYPELLLYKENTSEEEIED--------SEVKISDGEIKGAAQEIKKLIEYG- 530

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKD 420
                     ++ KDI +LVR + +   I  +       Y I VV    R      + +  
Sbjct: 531  ---------VEPKDIAILVRSKSNNNKIEDIL----LSYDIPVVLDEGRVDFLKSMEVLI 577

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--- 477
            ++ + R I +   DLS V ML+SPLF F+ED++ +I  Q       ++ I          
Sbjct: 578  MLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISVQGSRDLRFWDKILLSLKKEGKN 637

Query: 478  --------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
                      K +   +   E   +      H     I           + + G      
Sbjct: 638  PELINLSLEQKLKAFNQKFTEWRKLVNKIPIHRLLWKIYTETYYFDYVGALKNGEMRQAN 697

Query: 529  LDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
            L          E + Y  L + +      +EQ             N VR+MT H +KGLE
Sbjct: 698  LQALSVRAESYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTFHKSKGLE 757

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS------------RNNIV 632
               VFL++  S+       + + +             +                      
Sbjct: 758  FDYVFLMNLQSRFNDRDLKEDVILSREHGLGMKYIADLKAEPDVITDFPYALVKMETFPY 817

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +++   E  R+LYV  TRA  +L +      +++K   +      +     +D
Sbjct: 818  MVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKDTDKKAGLELYDAATLEGKILSD 877

Query: 693  ERVKKIK-------------------------LTNSINKDEWIAYEWSTHHPENTPLERE 727
            +     +                            +   +     ++     E+   +  
Sbjct: 878  KFRNSSRGFQHWILALQNATKLPMKLNVYTKDELETEKLEFTSQPDFKKLVEESEKFDNI 937

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL----------------- 770
             +    + E +       P +       I  PS +  +                      
Sbjct: 938  MSFSDEIKEAQKIMNYQYPHQAATELSSIQTPSQVKKRSYEKQLQVGEVQPVSEFVRVKN 997

Query: 771  ----ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-L 825
                +           G   H  +Q         + +  +   T +   +  K    + +
Sbjct: 998  LDFSDFGPKKITAAEMGSATHSFMQYADFS----QADLFSFQATLDEMGFDEKIKNQIDI 1053

Query: 826  LSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIF 881
              I  L +             +  E   S        K+  I+ G  D        I +F
Sbjct: 1054 TKILTLFDTEFGQFLSENVDKTVKEAPFSMLRTDEFAKEQYIVRGICDGFVKLADKIILF 1113

Query: 882  EYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
            +YKT        I  I   +  Q+++Y + L+ +Y    +   LI +  P+
Sbjct: 1114 DYKTDRFTNVSAISEIKERYKDQMNLYSEALQKAYHVNQIDKYLILLGGPR 1164


>gi|327463228|gb|EGF09549.1| exonuclease RexA [Streptococcus sanguinis SK1]
          Length = 1224

 Score =  334 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 158/1033 (15%), Positives = 327/1033 (31%), Gaps = 138/1033 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60
             + F       +  I   LW L  F  + +       +       +      L   ++  
Sbjct: 228  HSDFAAERERIFGQIKSALWELGAFFSAHLEHEGREFAGAKYQENVQDALTALAGLNELS 287

Query: 61   CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
             IEE   +L                  + +     K  + ++ N+    + E+L+    +
Sbjct: 288  PIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347

Query: 107  FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              ++     +  +                  Y E KK     +F D+     ++L+    
Sbjct: 348  LYQMDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE 407

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +R+   +  + +++DE QDT+  Q  ++  L           S  +  F VGD KQS
Sbjct: 408  ---VRHFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  A+P+    + +  Q+       +  +I L  +FRS  ++L   + VF    + +
Sbjct: 454  IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                D   T    +    +             + +     + S  S  +   +    ++ 
Sbjct: 510  VGEIDYNETHYLVAGNPSKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A  +   I  +I          +  +  KDI +L   R        L       Y+I +V
Sbjct: 563  AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQYQIPLV 612

Query: 406  GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +D        + +  ++   R I +  +D +   +LKSP+F+F ED++ ++  Q  +  
Sbjct: 613  PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672

Query: 465  TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +     +K                     K QH  + +      ++  S +D    I   
Sbjct: 673  SQENLYEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732

Query: 511  KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
            +           G +    L          E++S+  L   I  +++             
Sbjct: 733  RFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDLASVPV 792

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615
            +A  + VR+MT+H +KGLE   VFL++             + +  +              
Sbjct: 793  AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852

Query: 616  --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671
                      +           +  L+ ++  E  RLLYV MTRA  +L +    +    
Sbjct: 853  VEESYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVL 912

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                               + SN + W   +   F ++    + +               
Sbjct: 913  DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972

Query: 715  ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762
            +        +     + + I + +D  +   +L S  ++ I  P +  PS I        
Sbjct: 973  NEPVLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032

Query: 763  ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                +       +       G  +H+L+Q I           + 
Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862
                   +   A + +  L  I    E  +    +  S     E   +   + +   ++ 
Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDSSGQNF 1150

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ++ G +D   + +  I +F+YKT  +       +   +  QL +Y + L  SY    +  
Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELLARYHGQLDLYAQALSRSYGISQIEK 1208

Query: 923  LLIYVSEPKVFII 935
             LI +   ++ ++
Sbjct: 1209 YLILLGGEQLQVV 1221


>gi|134093954|ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans]
 gi|133737857|emb|CAL60902.1| putative ATP-dependent exoDNAse (exonuclease V) beta subunit RecB
            [Herminiimonas arsenicoxydans]
          Length = 1096

 Score =  334 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 159/946 (16%), Positives = 318/946 (33%), Gaps = 108/946 (11%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
             E  E+  +         V+ I   ++  +  G+    ++A  +++A  +    E F+ L
Sbjct: 238  GEDAEVDARLALWSDEKTVARI-GQIAWLLGQGSAVNQERATAIEKALSSGAALENFAAL 296

Query: 70   SSFFLTQKFTPQKNIITQEINKKS---------PDLKEKLKKSQDEFIKIRDRFNTYKMF 120
            ++ F       +KN  T+++ K              + + +   +    I  R     + 
Sbjct: 297  TNEFFDANGKFRKNRTTKDLTKALLGNLGDEGVYAFEVEFEAVGEALKTILRRSMEPAVI 356

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                A  T+       Y+  K +  V DF DL      LL   + +A+++ ++D    H+
Sbjct: 357  ALNRALFTVGAAYLETYQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYRHV 416

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QDT+ +QW ++++    +       +   ++F VGD KQSIY F  AEP+     
Sbjct: 417  LLDEFQDTNPLQWSIVQA----WLNAYGDDADKPSMFVVGDPKQSIYRFRRAEPRVFSAA 472

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            K     +  +  +         + R+ A I+ V++  F      Q            +++
Sbjct: 473  KETLVAQGADFLRT------NQTRRNAAGIVDVLNASFVANPIYQP-----------QTT 515

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                 G V     V      +             +  +E   +             +   
Sbjct: 516  LEQSPGAVWQLPLVQQDKQEKVVWSPVQLRDPLTTPREEEEDAR-----RLEEGRAVALA 570

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             + +  + +  +  D+++LV+KR          R       I    + R  L + L + D
Sbjct: 571  ILQARKELKSERWSDVMLLVKKRTHLRAYERALRE----AGIPFASDKRGGLLESLEVAD 626

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+AL  F+++  D+L+   +LKSP+    +D++  +  +R E         +        
Sbjct: 627  LIALLNFLITPHDNLALAHVLKSPIMAAGDDELIAL-AERREKTWWLRLQAEVTELSSPA 685

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNFT 536
                   + + +H+A     HD    IL       ++          +V+  ++ F    
Sbjct: 686  LLRAAGLLEKWLHLAPRLPVHDLLDRILHEGDVVARYAQTASPLVRGQVLGNIEAFTELA 745

Query: 537  LRNEQNSYSSLQELISELEQ------YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            L  +   Y SL + I  L +           +    A  + VRI+T+H AKGLE+P+V L
Sbjct: 746  LNLDAGRYPSLPKFIDALRRLQKSADSDAPDEADIDAALDAVRILTIHGAKGLEAPIVVL 805

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            +D      +   +  +   P   D P       +   R      L    ++  Q+E   L
Sbjct: 806  LDANHSDGARDDVGVLCAWPQDRDAPTHFSVFGRQAERGAARDTLFAEEEQLKQQEDWNL 865

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV  TRA + LI+   ++                           +    N +    W 
Sbjct: 866  LYVATTRAKNLLIVSGVADN--------------------------RSTTVNGVADGRWY 899

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
            A        +  P  +        + +        P             S+ +       
Sbjct: 900  ARFQGAQPVQ--PDAQAAAAAATGETEFFLPIFNPPALPAPQIEPTAIFSSAEIDE---- 953

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN-LLLSIT 829
                        G+ +H L++++   P       + +       L    E    +    +
Sbjct: 954  ------------GIALHALMELL--TPPQAWPITMHAPALIAKWLACTHEMAETISGQAS 999

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
             +L  P +        +       ++           R D+  +    ++I +YK     
Sbjct: 1000 VILAQPELARFFDPAQHRFARNEMEVVSSAG----VARFDRAVMFDDELWILDYK----- 1050

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
               +E     + AQL  Y    +  +P+  +   LI   + ++  +
Sbjct: 1051 RNLLESERAAYAAQLERYRVAAQQVFPDVRIRSGLI-TVDGRLTEL 1095


>gi|327470754|gb|EGF16210.1| exonuclease RexA [Streptococcus sanguinis SK330]
          Length = 1224

 Score =  334 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 146/1035 (14%), Positives = 326/1035 (31%), Gaps = 142/1035 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDI----NKYVSLSMETGNPTILKKAQTLQQAS 57
             + F       ++ I   LW L  F  + +     ++     +      L     L + S
Sbjct: 228  HSDFAAERERIFDQIKSALWELEAFFSAHLEHEGREFAGAKYQENVQDALTVLAVLNELS 287

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDR 113
              +   +    + +             + +  ++   ++ +   +++    +       +
Sbjct: 288  SIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQ 347

Query: 114  FNTYKMFKSTLA--------SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                   +                       Y E KK     +F D+     ++L   ++
Sbjct: 348  LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEIL---EI 404

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +R    +  + +++DE QDT+  Q  ++  L           S  +  F VGD KQS
Sbjct: 405  FPEVRRFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--EN 283
            IY F  A+P+    + +  Q+       +  +I L  +FRS  ++L   + VF     E 
Sbjct: 454  IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
               +  + T  +   +    +     L   ++ +       ++       D    ++ ++
Sbjct: 510  VGEIDYNETHYLVAGNPAKCEPNPANLASFLIYEGSKDSLEEEG------DEGLPQAVSA 563

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                 +   I  +   +          +  KDI +L   R        L       ++I 
Sbjct: 564  GEVDLVIKEIIRLHNEE---------GVAFKDITLLTASRT----RNDLILAAFEQHQIP 610

Query: 404  VVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            +  +D        + +  ++   R I +  +D +   +LKSP+F+  ED++ ++  Q  +
Sbjct: 611  LAPDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDLGEDELARLSLQASQ 670

Query: 463  TETVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
              +     +K                     K QH  + +      ++  S +D    I 
Sbjct: 671  EHSQENLYEKLVNALEGRGLNSDLVTQELQKKLQHFHETLQSWRTYSKTHSLYDLIWKIY 730

Query: 509  GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR---- 563
              +           G +    L          E++S+  L   I  +++           
Sbjct: 731  QDRFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASV 790

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-------- 615
              +A  + VR+MT+H +KGLE   VFL++             + +  +            
Sbjct: 791  PVAAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVANVS 850

Query: 616  ----PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        +           +  L+ ++  E  RLLYV MTRA  +L +    +  
Sbjct: 851  VSVEDPYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQE 910

Query: 672  -------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
                                 + +N + W   +   F ++    + +             
Sbjct: 911  ALDKRQWGKSQQGRLSASLRSQLNNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIG 970

Query: 713  EWST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
            + +        +     + + I++ +   +   +L S  ++ I  P +  PS I    + 
Sbjct: 971  QINEPVLFPADDLADNRQSDDIRRALYILESVDQLNSQYRSAIELPSVRTPSQIKKFYEP 1030

Query: 769  ------------------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
                                          +       G  +H+L+Q I           
Sbjct: 1031 IMDTDGLDIMDERAAFRPQPNFDLPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMA 1088

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKK 860
            +        +   A + +  L  I    E  +    +  S     E   +   +     +
Sbjct: 1089 VLRSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKQDEDSGQ 1148

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
            + ++ G +D   + +  I +F+YKT  +  +E   +   + +QL +Y + L  SY    +
Sbjct: 1149 EFVLRGILDGYLLFEDRIILFDYKTDKY--KEPSELIARYRSQLDLYAQALSRSYGISQI 1206

Query: 921  VCLLIYVSEPKVFII 935
               LI +   ++ ++
Sbjct: 1207 EKYLILLGGEQLQVV 1221


>gi|255657915|ref|ZP_05403324.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544]
 gi|260850107|gb|EEX70114.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544]
          Length = 1283

 Score =  334 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 144/1018 (14%), Positives = 306/1018 (30%), Gaps = 152/1018 (14%)

Query: 34   YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKS 93
            Y +   E             +   Q     +++  L   F           I +   K  
Sbjct: 282  YRTALAEKKAGGWDALCAAAKGWKQPVLRGKKYEALRDAFPD---------IRKAFEKSR 332

Query: 94   PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT---LAKYLNAHYEEAKKKNCVLDFE 150
             + K+    ++D ++   +      +   +        L        + AKK+  VLDF 
Sbjct: 333  DEAKKIFTDARDRYLAEMEASVLEDIRACSATVRRYVDLTTAFIDALQAAKKERNVLDFS 392

Query: 151  DLIINTNDLLKKRDVS------------------AWIRYKIDQEINHILIDEVQDTSLIQ 192
            DL      +L +   +                        + ++   I++DE QDT+ +Q
Sbjct: 393  DLEHFALAVLCRDSEALAGASEADFRGERGKALRTDAAEDLREKYAVIMVDEYQDTNGVQ 452

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
              ++  +                 F VGD KQSIY F  A+P     +     +    A 
Sbjct: 453  EAILNLIA-----------RADNRFTVGDVKQSIYRFRLADPYLFQAKYDAYPE-NPGAE 500

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI------GQVG 306
                +I +  +FRS A++L  ++ +F      + +  +     R               G
Sbjct: 501  DMDQLITMKQNFRSRAEVLAPINFIFDQVMTREAMEIEYDEKSRLYPGASYPEAEHTLKG 560

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTS-YFDSLPQESSASILARRIAYTISNMIGTDTIF-- 363
             ++L   +  + +       ++  +       +     + A+ IA  I+ ++ +      
Sbjct: 561  PMELDIILRGEPEQPVEGLSQAADAGDETGGEELEGFELEAQHIADRIAGLMESGYRVFD 620

Query: 364  -SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               G  R +  +DI VL+R  K           L     I    +      +   ++ ++
Sbjct: 621  KDAGGYRPLAYRDIAVLLRAVKGKAN---TLLELLRKNSIPAYADVDGGYFEANEVRLVL 677

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI---- 478
            AL + I +   ++    +L SP+  F+ +++ ++     + +     ++  +        
Sbjct: 678  ALLKTIDNARQEIPLAAVLVSPIGGFTMEELARLRMSVPDEDLFGALLRSHSPETPLEEG 737

Query: 479  --SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNF 535
               +       ++     A   S  +    +             + G      L    + 
Sbjct: 738  LADRAADFCASLNRWRSYAVSHSVPELIWKLYRETGYYDYVGGLKGGLLRQANLRMLADR 797

Query: 536  TLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                E+ +Y  L   +  LE         ++ R   A+ + VRIM++H +KGLE PVV +
Sbjct: 798  AAEYEKTNYRGLFRFLRFLEDLRKRDTDLSVARTLGASEDVVRIMSIHKSKGLEFPVVIV 857

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI--PQSKSRNNIVSDLIKHLKKSTQEEYN 648
             D               +   L   P +       +          +   +   T+ E  
Sbjct: 858  ADIAKGFNQLDARGTFLLHKELGIGPRLVERSTVGRQMYDTLPYQAIGARIVAETKAEEM 917

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSN---------------------QRTWYDMVYD 687
            R+LYV MTRA ++LI+      +  +K                         ++ D +  
Sbjct: 918  RVLYVAMTRAREKLILTGTLAAAKWEKQAARYARSLDSRELALPDDMIREADSYLDWIAP 977

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ---------- 737
            +         I+    ++  E +       H     L  E    +   E+          
Sbjct: 978  AVARHTDGAPIREAAGVDWGEMLDAVEPAAHFAVNLLSAEAIQPREEQEELDATLQSVRE 1037

Query: 738  -------------KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL---------- 774
                         +         +        +  S I  +   +L              
Sbjct: 1038 GRALPASPERELVEKRLSWHYDAEELPGITAKMTVSEIKQRFAESLREDEPAALPVAPAA 1097

Query: 775  -------------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                                RG ++H +LQ +    +  R+               A  +
Sbjct: 1098 PPVWRRPQFLQQKGRLSPAERGTLMHSILQNLDLHGDLTREGLRAQVARMEVTGMIAAGH 1157

Query: 822  KNLL--LSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPK---------KDIIISGRID 869
            ++ +   SI    ++ +          + E+  S  I   +         + I + G ID
Sbjct: 1158 EDAVNYTSIESFCQSSLGQRMQQAVRVWRELPFSRMIPVGEVNPTYAGSSEKIFVQGVID 1217

Query: 870  QISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             +       + + +YKT        E I   +  Q+ +Y + ++     K +   +++
Sbjct: 1218 VLFEEADGSLILLDYKTDR--DTTPEKIRRHYAKQIELYREAVESIV-GKEVKESILF 1272


>gi|229055131|ref|ZP_04195559.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603]
 gi|228721207|gb|EEL72736.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603]
          Length = 743

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++   L            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K   +      L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITTADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLASRF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNSNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + +I  +         I    
Sbjct: 335 YFVAKKIRDDIQMGNR---------KYTDFAVLYRTNAQSRMIEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFGRIINMPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|229131293|ref|ZP_04260195.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196]
 gi|229165271|ref|ZP_04293058.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621]
 gi|228618096|gb|EEK75134.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621]
 gi|228652179|gb|EEL08114.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196]
          Length = 743

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++   L            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K   +      L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITTADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLASRF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNSNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TENQIGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + +I  +         I    
Sbjct: 335 YFVAKKIRDDIQMGNR---------KYTDFAVLYRTNAQSRMIEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFGRIINMPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|324994711|gb|EGC26624.1| exonuclease RexA [Streptococcus sanguinis SK678]
          Length = 1224

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 158/1033 (15%), Positives = 327/1033 (31%), Gaps = 138/1033 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60
             + F       +  I   LW L  F  + +       +       +      L   ++  
Sbjct: 228  HSDFAAERERIFGQIKSALWELGAFFSAHLEHEGREFAGAKYQENVQDALTALAGLNELS 287

Query: 61   CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
             IEE   +L                  + +     K  + ++ N+    + E+L+    +
Sbjct: 288  PIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347

Query: 107  FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              ++     +  +                  Y E KK     +F D+     ++L+    
Sbjct: 348  LYQMDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE 407

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +R+   +  + +++DE QDT+  Q  ++  L           S  +  F VGD KQS
Sbjct: 408  ---VRHFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  A+P+    + +  Q+       +  +I L  +FRS  ++L   + VF    + +
Sbjct: 454  IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                D   T    +    +             + +     + S  S  +   +    ++ 
Sbjct: 510  VGEIDYNETHYLVAGNPSKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A  +   I  +I          +  +  KDI +L   R        L       Y+I +V
Sbjct: 563  AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQYQIPLV 612

Query: 406  GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +D        + +  ++   R I +  +D +   +LKSP+F+F ED++ ++  Q  +  
Sbjct: 613  PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672

Query: 465  TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +     +K                     K QH  + +      ++  S +D    I   
Sbjct: 673  SQENLYEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732

Query: 511  KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
            +           G +    L          E++S+  L   I  +++             
Sbjct: 733  RFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDLASVPV 792

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615
            +A  + VR+MT+H +KGLE   VFL++             + +  +              
Sbjct: 793  AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852

Query: 616  --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671
                      +           +  L+ ++  E  RLLYV MTRA  +L +    +    
Sbjct: 853  VEESYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVL 912

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                               + SN + W   +   F ++    + +               
Sbjct: 913  DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972

Query: 715  ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762
            +        +     + + I + +D  +   +L S  ++ I  P +  PS I        
Sbjct: 973  NEPVLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032

Query: 763  ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                +       +       G  +H+L+Q I           + 
Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862
                   +   A + +  L  I    E  +    +  S     E   +   + +   ++ 
Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDSSGQNF 1150

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ++ G +D   + +  I +F+YKT  +       +   +  QL +Y + L  SY    +  
Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELLARYHGQLDLYAQALSRSYGISQIEK 1208

Query: 923  LLIYVSEPKVFII 935
             LI +   ++ ++
Sbjct: 1209 YLILLGGEQLQVV 1221


>gi|327489960|gb|EGF21749.1| exonuclease RexA [Streptococcus sanguinis SK1058]
          Length = 1224

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 158/1033 (15%), Positives = 326/1033 (31%), Gaps = 138/1033 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60
             + F       +  I   LW L  F  + +       +       +      L   ++  
Sbjct: 228  HSDFAAERERIFGQIKSALWELGAFFSAHLEHEGREFAGAKYQENVQDALTALAGLNELS 287

Query: 61   CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
             IEE   +L                  + +     K  + ++ N+    + E+L+    +
Sbjct: 288  PIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347

Query: 107  FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              ++     +  +                  Y E KK     +F D+     ++L+    
Sbjct: 348  LYQMDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE 407

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +R+   +  + +++DE QDT+  Q  ++  L           S  +  F VGD KQS
Sbjct: 408  ---VRHFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  A+P+    + +  Q+       +  +I L  +FRS  ++L   + VF    + +
Sbjct: 454  IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                D   T    +    +             + +     + S  S  +   +    ++ 
Sbjct: 510  VGEIDYNETHYLVAGNPSKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A  +   I  +I          +  +  KDI +L   R        L       Y+I +V
Sbjct: 563  AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQYQIPLV 612

Query: 406  GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +D        + +  ++   R I +  +D +   +LKSP+F+F ED++ ++  Q  +  
Sbjct: 613  PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672

Query: 465  TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +     +K                     K QH  + +      ++  S +D    I   
Sbjct: 673  SQENLYEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732

Query: 511  KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
            +           G +    L          E++S+  L   I  +++             
Sbjct: 733  RFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDLASVPV 792

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615
            +A  + VR+MT+H +KGLE   VFL++             + +  +              
Sbjct: 793  AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852

Query: 616  --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671
                      +           +  L+ ++  E  RLLYV MTRA  +L +    +    
Sbjct: 853  VEESYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVL 912

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                               + SN + W   +   F +     + +               
Sbjct: 913  DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDKNLAYETRFVTDEELTAEEIGRI 972

Query: 715  ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762
            +        +     + + I + +D  +   +L S  ++ I  P +  PS I        
Sbjct: 973  NEPVLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032

Query: 763  ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                +       +       G  +H+L+Q I           + 
Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSSP--SMAVL 1090

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862
                   +   A + +  L  I    E  +    +  S     E   +   + +   ++ 
Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDSSGQNF 1150

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ++ G +D   + +  I +F+YKT  +       +   +  QL +Y + L  SY    +  
Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELLARYHGQLDLYAQALSRSYGISQIEK 1208

Query: 923  LLIYVSEPKVFII 935
             LI +   ++ ++
Sbjct: 1209 YLILLGGEQLQVV 1221


>gi|319939427|ref|ZP_08013787.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus
            1_2_62CV]
 gi|319811413|gb|EFW07708.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus
            1_2_62CV]
          Length = 1226

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 164/1036 (15%), Positives = 329/1036 (31%), Gaps = 142/1036 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +  F     +      + L+ L  F    + N+            +      L    +  
Sbjct: 228  RADFQEEKAQLLAQTKEALFDLEEFFHYHLANEAKEFPKAKYLENVQSVLDCLVSLQEQS 287

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK-----------EKLKKSQDEFIK 109
              E   + L       + +  K +      ++  ++            + L+   D F +
Sbjct: 288  SEEAYLTALDRIVEISRASNGKALTNSGRKEELKEIISTYNEKRKEKIQVLRNLADRFYR 347

Query: 110  IRDRFNTYK-MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               +   ++   +  L      K     Y   KK+    +F D+      +L++      
Sbjct: 348  FEFQVTYHEEAREILLVLQRFMKAFVESYLNRKKEENAFEFADISHFAIQILEEFPD--- 404

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +R+    + + +++DE QDT+  Q  ++  L           S+    F VGD KQSIY 
Sbjct: 405  VRHFYRTKYHEVMVDEYQDTNHTQERMLELL-----------SNGHNRFMVGDIKQSIYR 453

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F  A+P+    + +  Q       Q+  +I L  +FRS  ++L   + VF    + +   
Sbjct: 454  FRQADPQIFNEKFKTYQDD----SQQGKLIVLKENFRSHVEVLEATNDVFKRLMDEEVGE 509

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             D   T    +    +      ++     +D              +    +  +SI A  
Sbjct: 510  IDYNETHYLVAGNPDKKEPNPQYQTEFLIYDGT--------LETNNEENDKDVSSISAGE 561

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +A  I  +I          +  +  +D+ +L   R        +       Y I VV + 
Sbjct: 562  VALVIKEIIR------LNNEENVPFEDMTLLTASRT----RNDVILSEFAKYGIPVVSDG 611

Query: 409  R-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                    + +  ++   R I +  +D + V +LKSP+F F+ED++ ++  Q+  TE  Y
Sbjct: 612  GEDNYLQSVEVMVMLDTLRTINNPLNDYALVALLKSPMFTFTEDELARLALQKKVTEANY 671

Query: 468  EYIQKFANCG-------------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
               Q+                        + K Q   + + +    A+  S +D    I 
Sbjct: 672  IIHQENLYEKLKNALSGHGQHPELITPPLLKKIQQFQEILLDWREFAKINSLYDLLWKIY 731

Query: 509  GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKR 563
              +       +   G      L          E+ S+  +   I      LE        
Sbjct: 732  QDRFYYDYVGALPNGAGRQANLYALTLRANDYEKMSFKGVSRFIGMIDKILETQNDLASV 791

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-------- 615
              +A  + VR+MTVH +KGLE   VFL++             + +               
Sbjct: 792  VVAAPKHAVRLMTVHKSKGLEFKYVFLLNMDKVFNRKDSSSALILSRQNGVGIKYVADVV 851

Query: 616  ----PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                  +     +            + +  ++  E  RLLYV MTRA  +L +       
Sbjct: 852  VDAADELAPNHVRLSIDTLPYVQNEREIHLASISEQMRLLYVAMTRAERKLYLVGKGRQE 911

Query: 672  NEKKSNQRT-------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            + +K                        W   +   F  D+     +     +       
Sbjct: 912  SLEKKTFPAPENGRLAASIRQTMTSFQDWIWALQTVFEKDDLAFSTQFVTDSDLTSEKIG 971

Query: 713  E----WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------ 762
            +                + E I++ +D  +   +L +  +  I+ P +  PS I      
Sbjct: 972  QLKLKERIVEENLAHNRQSEDIRRALDILENVDRLNTQYRAAIHLPSVRTPSQIKKFYEP 1031

Query: 763  -------------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                                T  +    +  +       G  +H+L+Q I          
Sbjct: 1032 IMDTDGVEIMEKKTPDFIGKTSFELPDFAKKAPVTGAQIGSAVHELMQRIPLNQLPTIAI 1091

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPK 859
               +     A+    K+    L  I    E  +    +  +   Y E   +   +     
Sbjct: 1092 LKETLAQVQAEETVKKKID--LQKIASFFETELGQLLLKQADKVYREAPFAMLKQDQASG 1149

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
            +D ++ G +D   +    I +F+YKT  +       +   + AQL++Y + L+ SY  + 
Sbjct: 1150 QDFVVRGILDGYLLLADRIVLFDYKTDQYT--NPSELVGRYQAQLALYAEALRRSYGIEK 1207

Query: 920  LVCLLIYVSEPKVFII 935
            +   L+ +   ++ ++
Sbjct: 1208 IEKYLVLLGGVQLQVV 1223


>gi|218231540|ref|YP_002365134.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264]
 gi|218159497|gb|ACK59489.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264]
          Length = 753

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     ++  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|325696015|gb|EGD37906.1| exonuclease RexA [Streptococcus sanguinis SK160]
          Length = 1224

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 157/1033 (15%), Positives = 331/1033 (32%), Gaps = 138/1033 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60
             + F       +  I   LW L  F  + +       +       +      L   +++ 
Sbjct: 228  HSDFAAERERIFGQIKSSLWELEAFFSAHLEHEGREFAGAKYQENVQDALTVLAGLNESS 287

Query: 61   CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
             IEE   +L                  + +     K  + ++ N+    + E+L+    +
Sbjct: 288  SIEETAQILKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQ 347

Query: 107  FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              ++     +  +                  Y E KK     +F D+     ++L+    
Sbjct: 348  LYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKAENAFEFGDISHFAIEILETFPE 407

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +R    +  + +++DE QDT+  Q  ++  L           S  +  F VGD KQS
Sbjct: 408  ---VRRFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGKNRFMVGDIKQS 453

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  A+P+    + +  Q+       +  +I L  +FRS  ++L   + VF    + +
Sbjct: 454  IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                D   T    +    +             + +     + S  S  +   +    ++ 
Sbjct: 510  VGEIDYNETHYLVAGNPTKREP-------NPANRASFLIYEGSKESPEEEGDEGLPQAVS 562

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A  +   I  +I          +  +  KDI +L   R        L       ++I +V
Sbjct: 563  AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLV 612

Query: 406  GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +D        + +  ++   R I +  +D +   +LKSP+F+F ED++ ++  Q  +  
Sbjct: 613  PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQEH 672

Query: 465  TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +     +K                     K QH  + +      ++  S +D    I   
Sbjct: 673  SQENLYEKLVNALEGRGLNPALVTQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732

Query: 511  KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
            +           G +    L          E++S+  L   I  +++             
Sbjct: 733  RFYYDMVGTLANGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPV 792

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615
            +A  + VR+MT+H +KGLE   VFL++             + +  +              
Sbjct: 793  AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852

Query: 616  --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671
                      +           +  L+ ++  E  RLLYV MTRA  +L +    +    
Sbjct: 853  VEESYAPNQLRISMDTLPYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEAL 912

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                               + SN + W   +   F ++    + +             + 
Sbjct: 913  DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGQI 972

Query: 715  ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762
            +        +     + + I++ +D  +   +L S  ++ I  P +  PS I        
Sbjct: 973  NEPLFFPADDLADNRQSDDIRRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032

Query: 763  ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                +       +       G  +H+L+Q I      +    + 
Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDG--RPSMAVL 1090

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862
                   +   A + +  L  I    E  +    +  S     E   +   + +   ++ 
Sbjct: 1091 RSALAQVQADEAVKKQIQLPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDASGQNF 1150

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ++ G +D   + +  I +F+YKT     ++   +   +  QL +Y + L  SY    +  
Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKT--VKYKDSSELIARYRGQLDLYAQALSRSYGISQIEK 1208

Query: 923  LLIYVSEPKVFII 935
             LI +   ++ ++
Sbjct: 1209 YLILLGGEQLQVV 1221


>gi|34581275|ref|ZP_00142755.1| ATP-dependent helicase [Rickettsia sibirica 246]
 gi|28262660|gb|EAA26164.1| ATP-dependent helicase [Rickettsia sibirica 246]
          Length = 822

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 174/621 (28%), Positives = 298/621 (47%), Gaps = 39/621 (6%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              F T+  T +K+++++E+ +K P L  +L+K   E  ++ +     ++   T     L
Sbjct: 237 KEIFFTKDGTKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL  +    W+ +K++ EINHIL+DE QDTS
Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW +I +L  +F   +       ++F VGD+KQSI+SF GA+ +         +   T
Sbjct: 357 PSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           NA +KF  I L  S+RS  +IL     V    ++       S   +   SS     G+V 
Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPGLFLSNNPL--ISSFRTHQGSVT 471

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W  V S+       ++  W    D    +S+A +L  +I   I   I ++ I  +   R
Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESEEILPSTANR 526

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KD ++LVRKR +    +       +  K+ V  +DR  L ++L I DL++L +F+L
Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +DDL+   +LKSP+   SE  ++++   + E               +S  + +   + 
Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYELLVNKSENS---------LWDILSSHEEIYNKLD 633

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            LI I +     +FF L++     R+ +     ++  D+++E L  +     +  +SLQ 
Sbjct: 634 SLIEIYKISIVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKNYANDIDNSLQG 689

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++  E     IKR    + +++R+MTVH +KGLE+P+V L D+ +   S          
Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             + DD G   +   +      + +L +  K    +EY RLLYV MTRA D+LIIC    
Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798

Query: 670 TSNEKKSNQRTWYDMVYDSFH 690
            SN+  + +  WY++   +  
Sbjct: 799 -SNKSTTPENCWYEIAKQTCD 818


>gi|163938296|ref|YP_001643180.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis KBAB4]
 gi|163860493|gb|ABY41552.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis KBAB4]
          Length = 747

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++   L            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K   +      L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITTADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLASRF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNSNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TENQIGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + +I  +         I    
Sbjct: 339 YFVAKKIRDDIQMGNR---------KYTDFAVLYRTNAQSRMIEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFGRIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300072981|gb|ADJ62380.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1]
          Length = 1158

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 167/938 (17%), Positives = 333/938 (35%), Gaps = 85/938 (9%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91
               +++ +  G      +A  ++ A       E F  L S F   K  P+KN   + +  
Sbjct: 270  ASQLAILLGQGGSANQARAVAIESALSAGPALEHFDALYSQFFDDKDKPRKNGKVKSLLA 329

Query: 92   KSPDLKEKLKKSQ------------DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
                  E  + +             +   K++ R     + +   A  T  +   A Y+E
Sbjct: 330  ALVQHFEASEDAALVAFEMEFNAVGEALRKLQGRSKEKDVLQLNAALFTAGRAYLACYQE 389

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K +  VLDF DL      LL+    +A+++ ++D    HIL+DE QDT+ +QW ++R  
Sbjct: 390  VKAEQRVLDFADLEWQAYRLLRNEASAAYLQTRLDARYKHILLDEFQDTNPLQWCIVRC- 448

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
               +       ++  ++F VGD KQSIY F  AEP+  +  + + +       Q  +I+ 
Sbjct: 449  ---WLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEPRVFVAAREMLRA------QGAAILR 499

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSE------DSTTTIRHRSSRIGQVGTVQLWEQ 313
               + R+   ++ V+++ F +  N     +               +        V   + 
Sbjct: 500  ANQTRRNATAVVDVLNRSFVMGGNPLFAQQTTLGLAGGEVWRLPLARPDDGAENVSSADT 559

Query: 314  VVSQHDSQCNPQQESWTSYF---DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              +    +  P+   W +          ++   +    +A  +        +      R 
Sbjct: 560  DAASAAPEGEPEVIPWRNPLTTPRGEEDDARRLLEGLALAQALLKAYREVPVVEGKGARS 619

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++  DI++LVRKR          R       I  + + R  L + L I DL+AL  F+++
Sbjct: 620  MRWGDIMLLVRKRTHLAAYESALRA----AGIPFISDKRGGLLESLEIADLIALLTFLIT 675

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI----SKFQHVIK 486
              D  +   +LKSP+ + ++DD+ +I  +  + E  + + Q  A        +     + 
Sbjct: 676  PNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWWRQLQAMQQEGAASAALVRAVT 735

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNFTLRNEQN 542
             +   +  A     HD   +IL   +   ++          + +  +  F+  +L  +  
Sbjct: 736  LLQRWLLAAPHLPVHDLLDMILHQGELVARYAQHASPLTRSQTLGNIAAFVELSLNMDAG 795

Query: 543  SYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             Y SL + I  L             + +  A+ + VRI+TVH+AKGLE+PVV ++D    
Sbjct: 796  RYPSLPKFIDALRVLQRSAGGDAPDEASVDASGDAVRILTVHSAKGLEAPVVAILDANHS 855

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                 ++  +   P   D P       +   R +    L +  +    +E   LLYV +T
Sbjct: 856  DSVEDNLGILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEETLRTQEDWNLLYVAVT 915

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA   L++   + T                                 +    +     S 
Sbjct: 916  RAKQLLLVSGVAGTRGA-------------------------DAGGVVQGSWYQRLFASD 950

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                    E     +    E++    LF P    ++          D       +  L  
Sbjct: 951  APVREISEEAVHGAEAAAIEERFSLALFDPRPLPMSLFGAPADDPQDAVPALTADGALVS 1010

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                + G+ +H LL+ +         +  ++          A+  + +      +L  P 
Sbjct: 1011 TDAIDEGVALHALLERLTHG-HAWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQ 1069

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            +    +   +       +I  P   + +    D++ +    +++ +YK      + ++  
Sbjct: 1070 LERFFNPALHRWARNEMEIVTPNGLMRL----DRVVMFDDELWVIDYK-----RRLLDSE 1120

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
               + AQL  Y   L   + +K +   LI  +E  +  
Sbjct: 1121 RADYAAQLGRYRSALMSVFSDKQIRSALI-TAEGALIE 1157


>gi|125622886|ref|YP_001031369.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris
            MG1363]
 gi|251764529|sp|A2RH77|ADDA_LACLM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|124491694|emb|CAL96613.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris
            MG1363]
 gi|300069624|gb|ADJ59024.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris
            NZ9000]
          Length = 1203

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 162/1032 (15%), Positives = 307/1032 (29%), Gaps = 150/1032 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----------ILKKAQTLQ 54
            G    +S   + +D        +    + +  S+  G              IL     L 
Sbjct: 207  GFETYKSLTDLSEDFTVNVKENLLTFFELLENSLTNGVIAKKGAGRDKANLILDNKNELL 266

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112
            +A   +      +L  S     +    K+     + K     K+ L  S+ +  ++R   
Sbjct: 267  EAISKKDFVTCTALFLSIDTDIRVGSSKDEALSALKKDFSAQKQDLVGSKSKPGELRKFV 326

Query: 113  ---------RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                          + F+               Y E KK     ++ D+     ++L++ 
Sbjct: 327  DKIKHGQLIEKYQNQAFEIASDLQKFIIDFYKTYLERKKNENAFEYSDIAHFAIEILEEN 386

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                 IR  + +  + I+IDE QDTS  Q  ++  L           S+   LF VGD K
Sbjct: 387  PD---IRENLREHYDEIMIDEYQDTSHTQERMLELL-----------SNGHNLFMVGDIK 432

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            QSIY F  A+P   L + +   +          +I L  +FRS  ++L   + +F    +
Sbjct: 433  QSIYGFRLADPGLFLEKYKSYDQA----ENPNQLIRLKENFRSRGEVLNFTNDIFKHLMD 488

Query: 284  AQGLSEDSTTTIRHRSSRIGQ---VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             +                I           + +++   ++    + E          +  
Sbjct: 489  EKLGEMTYGKEEALVQGNISDYPVEAEKDFYPELLLYKENTSEEEIED--------SEVK 540

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
             +    +  A  I  +I             ++ KDI +LVR + +   I  +       Y
Sbjct: 541  ISDGEIKGAAQEIKKLIEYG----------VEPKDIAILVRSKSNNNKIEDIL----LSY 586

Query: 401  KISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I VV    R      + +  ++ + R I +   DLS V ML+SPLF F+ED++ +I  Q
Sbjct: 587  DIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISVQ 646

Query: 460  RHETETVYEYIQKFANCG-----------ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                   ++ I                    K +   +   E   +      H     I 
Sbjct: 647  GSRDLRFWDKILLSLKKEGKNPELINLSLEQKLKAFNQKFTEWRKLVNKIPIHRLLWKIY 706

Query: 509  GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS----ELEQYPPTIKR 563
                      + + G      L          E + Y  L + +      +EQ       
Sbjct: 707  TETYYFDYVGALKNGEMRQANLQALSVRAESYESSGYKGLFKFVRLINKFMEQNNDLASV 766

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  N VR+MT H +KGLE   VFL++  S+       + + +             + 
Sbjct: 767  NIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSREHGLGMKYIADLK 826

Query: 624  QSKSRNNIVSDL------------IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                        +++   E  R+LYV  TRA  +L +      +
Sbjct: 827  AEPDVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKDT 886

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIK-------------------------LTNSINK 706
            ++K   +      +     +D+     +                            +   
Sbjct: 887  DKKAGLELYDAATLEGKILSDKFRNSSRGFQHWILALQNATKLPMKLNVYTKDELETEKL 946

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
            +     ++     E+   +   +    + E +       P +       I  PS +  + 
Sbjct: 947  EFTSQPDFKKLVEESEKFDNIMSFSDEIKEAQKIMNYQYPHQAATELSSIQTPSQVKKRS 1006

Query: 767  KTNL---------------------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
                                     +           G   H  +Q         + +  
Sbjct: 1007 YEKQLQVGEVQPVSEFVRVKNLDFSDFGPKKITAAEMGSATHSFMQYADFS----QADLF 1062

Query: 806  TSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVSVSG--KINCPKK 860
            +   T +   +  K    + +  I  L +             +  E   S        K+
Sbjct: 1063 SFQATLDEMGFDEKIKNQIDITKILTLFDTEFGQFLSENVDKTVKEAPFSMLRTDEFAKE 1122

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
              I+ G  D        I +F+YKT        I  I   +  Q+++Y + L+ +Y    
Sbjct: 1123 QYIVRGICDGFVKLADKIILFDYKTDRFTNVSAISEIKERYKDQMNLYSEALQKAYHVNQ 1182

Query: 920  LVCLLIYVSEPK 931
            +   LI +  P+
Sbjct: 1183 IDKYLILLGGPR 1194


>gi|238650390|ref|YP_002916242.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic]
 gi|238624488|gb|ACR47194.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic]
          Length = 822

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 173/621 (27%), Positives = 297/621 (47%), Gaps = 39/621 (6%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              F T+    +K+++++E+ +K P L  +L+K   E  ++ +     ++   T     L
Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL  +    W+ +K++ EINHIL+DE QDTS
Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW +I +L  +F   +       ++F VGD+KQSI+SF GA+ +         +   T
Sbjct: 357 PSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           NA +KF  I L  S+RS  +IL     V    ++       S   +   SS     G+V 
Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPSLFLSNNPL--ISSFRTHQGSVT 471

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W  V S+       ++  W    D    +S+A +L  +I   I   I ++ I  +   R
Sbjct: 472 VWPLVTSEKQ-----EELFWALPKDYENSKSAADLLIEKIVNFIKEQIESEEILPSTANR 526

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KD ++LVRKR +    +       +  K+ V  +DR  L ++L I DL++L +F+L
Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +DDL+   +LKSP+   SE  ++++   + E               +S  + +   + 
Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYELLVNKSENS---------LWDILSSHEEIYNKLD 633

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            LI I +     +FF L++     R+ +     ++  D+++E L  +     +  +SLQ 
Sbjct: 634 SLIEIYKISIVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKNYANDIDNSLQG 689

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++  E     IKR    + +++R+MTVH +KGLE+P+V L D+ +   S          
Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             + DD G   +   +      + +L +  K    +EY RLLYV MTRA D+LIIC    
Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798

Query: 670 TSNEKKSNQRTWYDMVYDSFH 690
            SN+  + +  WY++   +  
Sbjct: 799 -SNKSTTPENCWYEIAKQTCD 818


>gi|228919227|ref|ZP_04082597.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840334|gb|EEM85605.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 753

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 120/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + ++ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNVDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     ++  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|313890533|ref|ZP_07824161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN
            20026]
 gi|313121050|gb|EFR44161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN
            20026]
          Length = 1217

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 171/1022 (16%), Positives = 325/1022 (31%), Gaps = 128/1022 (12%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
            FG   +   E + + +                  +        K  + LQ     Q    
Sbjct: 232  FGSLPDTDIEALLQSMQRTATSLRDLTELEDYGQLTKAGKPSAKYQKHLQMIQLLQEWSL 291

Query: 65   RFSLL--SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
             F                   + T +    +       K  Q     ++     +     
Sbjct: 292  HFDTYYGKEQISQLARDVLALLPTGDAVTINKRKYSVFKDLQARLKDVQHLETIFTFQAE 351

Query: 123  TLASLTLAKYLN----AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            TL  L L +         Y +AK +    +F D+      +L+       I+     + +
Sbjct: 352  TLPLLKLLQAFVLDFSKAYLKAKIEENAFEFSDVAHFAIAILENNPE---IQVSYQNKYH 408

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             +++DE QD + IQ +++  L           S+    F VGD KQSIY F  A+P    
Sbjct: 409  EVMVDEYQDNNHIQEKLLELL-----------SNGHNRFMVGDIKQSIYRFRQADPLIFN 457

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIR 296
            ++ +  Q+   N      +I L  +FRS +++L V + VFS    E    +  D++  + 
Sbjct: 458  QKFKDYQENPEN----GRLILLKENFRSQSEVLAVTNAVFSHLMDEAVGDILYDTSHRLL 513

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
              SSR  +       + ++   DSQ   QQ       + L     +    + +A  I  +
Sbjct: 514  PGSSRQEESFPENRCQLLLYNTDSQDQSQQ---PDSSEMLSDNQVSPGEVKIVAKEIIRL 570

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DH 415
               +          +   DI +LV  R              N   I +V +         
Sbjct: 571  HNDEQ---------VAFSDITLLVSSRTR----NDNILRTFNRLGIPLVSDGGLDHYLQS 617

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            + I  ++   R I +  +D + V +LKSP+F F ED + +I  Q    + V  + +K  N
Sbjct: 618  VEIMVMLDTLRTINNPLNDYALVALLKSPMFAFDEDQLARIALQESRQDKVESFYEKIQN 677

Query: 476  CGISK--------------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR- 520
                K                   K + +    A+  S +D    I   +       +  
Sbjct: 678  ALSKKGLYPDLVTNDLQESLIRFDKILKQWRLFAKKNSLYDLIWKIYNDRFYFDYVATSP 737

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMT 576
               +    L        + E+  Y  L   IS     LE              + V +MT
Sbjct: 738  KAEQAQANLYALALRASQFEKTGYRGLSRFISMIDRILETENDLADVDIVQAKDAVNLMT 797

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-----------IWIPQS 625
            +H +KGLE   VF+++   +           +                      +   + 
Sbjct: 798  IHKSKGLEFKYVFILNCDKKFSFKDLYAPAILDRQQGIGIKYLADFKTLLDAEQLSSLKV 857

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-------------- 671
                       K LK++T  E  RLLYV MTRA  +L +    +                
Sbjct: 858  TLETLPYQMNRKALKRATLSEQMRLLYVAMTRAEKKLYLIGKGSQEKLADKYDGQREGNH 917

Query: 672  -----NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL-- 724
                  E   + + W+  + +SF  +E    ++  +  +  +    +       +     
Sbjct: 918  LPRTVRENLQSFQDWFLAIRESFAQEELYFDLRFESDSDLGDDAIGQLVVKEVLDPDNLA 977

Query: 725  --EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------------------- 762
               + + I + +D  +   +L       I+ P +  PS +                    
Sbjct: 978  HNRQSDHIARALDMLEKVNQLNQSYHAAIHLPTVQTPSQLKDFYQPIMDSEGVAVIEKSR 1037

Query: 763  ---DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                        S          G  +H+L+Q I       +++   +    NA      
Sbjct: 1038 PLSQASFVLPNFSENLTIDASQIGSSLHELMQKITISERVTQESVRKALTLVNASESLKA 1097

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISIS 874
            +    L  I +      +   +       + E   +   K    ++  ++ G ID   + 
Sbjct: 1098 KLD--LDKIIQFFNQTALGQLICNHHQKLHREAPFAMLKKDMLSQEKFVVRGIIDGYLLF 1155

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
            +  I +F+YKT  +   +   +   +  QL++Y + L  +Y   ++   L+ +    + +
Sbjct: 1156 KDKIILFDYKTDKY--HQASELERRYAGQLALYAEALSQAYNIDTVEKYLVLLGGEDLEV 1213

Query: 935  IP 936
            I 
Sbjct: 1214 IS 1215


>gi|169335596|ref|ZP_02862789.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM
            17244]
 gi|169258334|gb|EDS72300.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM
            17244]
          Length = 1171

 Score =  333 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 166/971 (17%), Positives = 350/971 (36%), Gaps = 104/971 (10%)

Query: 29   SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88
             D+ + +++ ++    T       L++    +   + F    +  L  +   +   +  E
Sbjct: 241  DDLLEILNMDLDGLKNTQNLLINNLEKFITLK-PADIFKRFKAGGLKGEEKAEVQNLRNE 299

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
                       L  +  + I +         +             +A+Y   K +  VL+
Sbjct: 300  SKDILKKALNILTFNYKDIIDVVHEL-----YPHMKTIEQAIIDFDAYYSHLKSEKGVLE 354

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F+D       +L+       I      + +++ +DE QDT+L+Q  +I  + ++      
Sbjct: 355  FKDTEHLCLKILEDEKAREEIL----SKFDYVFVDEYQDTNLVQEAIINKVIKE------ 404

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                   LF VGD KQSIY F  AEP+  L   +  +K      +    + +  +FR+  
Sbjct: 405  -----NNLFTVGDVKQSIYRFRQAEPEIFLDRIKNYKKD----EKINKTVYMNTNFRTNK 455

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            +I+T ++ +F    + +    +     R  + R  +         + S+ +     +  +
Sbjct: 456  NIITGINTLFEKIMSKKTGKINYDENERLIAGRDEE---------IESKIEVHLINKDTA 506

Query: 329  WTSYFD-SLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLVRKRKDT 386
                FD  L + S+       IA  I+N+IGTD       + R ++  DI +L R     
Sbjct: 507  GVDSFDSELSELSTEENEITYIALMINNLIGTDIYDPELKEYRKVKFSDICILHRS---A 563

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                   + + N Y I V           L I+ +      I + +DD++ + +++SP+F
Sbjct: 564  NTRIKNVKEIFNKYSIPVTSEKEIEYFKTLEIETIKDFLSIINNFKDDITLLSVMRSPIF 623

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPH 501
            NF+ D++ +I     E+      +              K ++++K I++    + + S  
Sbjct: 624  NFTVDELLEIKISTRESHYYKSIMSFINKENVNITLKDKVKNMLKVINDYSDRSLYTSVP 683

Query: 502  DFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE---QY 557
            D  + I           +  FGN  ++ +   L      E  S   L   I+ ++     
Sbjct: 684  DLISNIYEETNIMDYMSALPFGNIRVNNMKTLLIKANEYESFSNEGLYGFINFMDYAKIQ 743

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
              +       + N V  M++H +KGLE P+V L+            K + +   L   P 
Sbjct: 744  SESGYAFSEDSENSVNFMSIHKSKGLEFPIVILMGCHKMFNMLDTKKPIMLNKDLGICPS 803

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE---- 673
            +     + K  +                E  RLLYV +TRA ++LI+  +S  + +    
Sbjct: 804  LIDLDNKYKVDSIFKICAKIVENNEILSEEMRLLYVALTRAKEKLILTAYSKDTKKLIDN 863

Query: 674  -----KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                    +       +          K  +  N+I  ++     ++    +        
Sbjct: 864  LPSNITPYSVEFSNSYLEWIMQGILPNKIYEEENNIIYEDNNFIVYNNKIEDLLTELSTS 923

Query: 729  TIKQLMDEQKIPKKLFSPIKNDI----------NEPYILNPSTID-------------TK 765
             I Q  D+  +  K+ + IK+D+            P     S++                
Sbjct: 924  YINQKDDDFYLDDKIINKIKDDLNFKYKNIVNTTIPRKAGVSSLKNVDLLEVGNNVINLS 983

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIF-------TLPEHKRKNFITSYCTKNAKLWPA 818
                 +   S   +  +G IIH + ++I           + +    I  +  K  K+   
Sbjct: 984  EAPKFKQEKSVLSSAEKGNIIHFIFEIIDIDKLKKTENIKAEIDTQIREFINK--KMIKQ 1041

Query: 819  KEYKNL-LLSITRLLENPMMTTAM-SCDSYSEVSVSGKINCPK---------KDIIISGR 867
            +E  N+ +  I    ++ +    + S   Y E+  +  +             ++I++ G 
Sbjct: 1042 EEVDNIDINYIYNFFDSNIGKELIHSKKIYRELPFNLALKAKDISEKWKDSEEEILVQGI 1101

Query: 868  IDQISISQQNI-FIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLL 924
            ID    ++     + +YKT+H +   E + +      QL+ Y++ +     NK++    +
Sbjct: 1102 IDLTFETKDGAMILVDYKTNHYNNESEKKELLKGFEIQLNYYKRAISTLM-NKNVKHSYI 1160

Query: 925  IYVSEPKVFII 935
             ++S+ ++  +
Sbjct: 1161 YFLSKNEIEEV 1171


>gi|30018548|ref|NP_830179.1| DNA helicase II [Bacillus cereus ATCC 14579]
 gi|229042192|ref|ZP_04189946.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676]
 gi|229107966|ref|ZP_04237593.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15]
 gi|229125791|ref|ZP_04254817.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4]
 gi|229143089|ref|ZP_04271522.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24]
 gi|229148694|ref|ZP_04276944.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550]
 gi|29894089|gb|AAP07380.1| DNA helicase II [Bacillus cereus ATCC 14579]
 gi|228634702|gb|EEK91281.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550]
 gi|228640362|gb|EEK96759.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24]
 gi|228657648|gb|EEL13460.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4]
 gi|228675469|gb|EEL30686.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15]
 gi|228727127|gb|EEL78330.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676]
          Length = 753

 Score =  333 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     ++  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|229587088|ref|YP_002845589.1| ATP-dependent helicase [Rickettsia africae ESF-5]
 gi|228022138|gb|ACP53846.1| ATP-dependent helicase [Rickettsia africae ESF-5]
          Length = 822

 Score =  333 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 172/621 (27%), Positives = 296/621 (47%), Gaps = 39/621 (6%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              F T+    +K+++++E+ +K P L  +L+K   E  ++ +     ++   T     L
Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL  +    W+ +K++ EINHIL+DE QDTS
Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW +I +L  +F   +       ++F VGD+KQSI+SF GA+ +         +   T
Sbjct: 357 PSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           NA +KF  I L  S+RS  +IL     V    ++       S   +   SS     G+V 
Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPGLFLSNNPL--ISSFRTHQGSVT 471

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W  V S+       ++  W    D    +S+A +L  +I   I   I ++ I  +   R
Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESEEILPSTANR 526

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KD ++LVRKR +    +       +  K+ V  +DR  L ++L I DL++L +F+L
Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +DDL+   +LKSP+   SE  ++++   + E               +S  + +   + 
Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYELLVNKSENS---------LWDILSSHEEIYNKLD 633

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            LI + +     +FF L++     R+ +     ++  D++ E L  +     +  +SLQ 
Sbjct: 634 SLIELYKISIVENFFDLVVHNLNLRELY----DDDSDDMITELLTLSKNYANDIDNSLQG 689

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++  E     IKR    + +++R+MTVH +KGLE+P+V L D+ +   S          
Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             + DD G   +   +      + +L +  K    +EY RLLYV MTRA D+LIIC    
Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798

Query: 670 TSNEKKSNQRTWYDMVYDSFH 690
            SN+  + +  WY++   +  
Sbjct: 799 -SNKSTTPENCWYEIAKQTCD 818


>gi|296501120|ref|YP_003662820.1| DNA helicase II [Bacillus thuringiensis BMB171]
 gi|296322172|gb|ADH05100.1| DNA helicase II [Bacillus thuringiensis BMB171]
          Length = 749

 Score =  333 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 124/763 (16%), Positives = 238/763 (31%), Gaps = 133/763 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     ++  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFANLLNNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
              +++   +E  RL YVG+TRA ++L +      +   +++       + +        
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTSMNAASRFIIEIPTELVES 647

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                              S+     T   R  +       + 
Sbjct: 648 LNETAPKRETSFGAKGRTASSGKTTITTTTRSRSAFARPAAKT 690


>gi|300704439|ref|YP_003746042.1| helicase, uvrd subfamily [Ralstonia solanacearum CFBP2957]
 gi|299072103|emb|CBJ43435.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CFBP2957]
          Length = 1177

 Score =  333 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 155/959 (16%), Positives = 325/959 (33%), Gaps = 80/959 (8%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
              +  D+  +  +                  T +  A+ L + S      + F +L + F
Sbjct: 247  AALLADMLRVSGWLGQG--GAAEGKRAVQIETAVTTARALDR-SDAAARRDAFEMLFTAF 303

Query: 74   LTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             TQ   P+    T+ +     +     L +      +       R +  ++     A  T
Sbjct: 304  HTQAGKPRACKPTKALVNAIGEGSAQTLVDLHGALCEALAAYHARRHESRVRAINAALFT 363

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            L   L   Y+  K++   +DF DL      L++  D +A+++ ++D    H+L+DE QDT
Sbjct: 364  LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            + +QW ++    + +  G        T+F VGD KQSIY F  A+ +     + +     
Sbjct: 424  NPMQWRIL----QGWLRGYEGTGMRPTVFLVGDPKQSIYRFRRADARLFEAARDMLVAGF 479

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +++    + R+   +L  V+ VF            +    +  +        +
Sbjct: 480  -----DATVLRTNRTRRNAPAVLEWVNAVFLQARARGDY---AIYAEQSTAVDAPAGQAL 531

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
             L    V +             +       +S       ++A  +  +   + +  NG +
Sbjct: 532  LLPLVPVPEAAQTGEAAPRDSLTEPREEAGDSQRYDEGCQVAACLRALHAGERVRENGDE 591

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R ++  D  +LVR+++         R    D  +  +   R  L   L   DL AL  F+
Sbjct: 592  RPVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDFL 647

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYEYIQKFANCGI--SKFQHV 484
            ++ + DL    +L+SP+F  ++DD+  +    +     T +  +   A+     ++ +H 
Sbjct: 648  MTPQADLPLAHVLRSPIFAATDDDLIALAQTGEGASAPTWWARLTALASQPHAAARLRHA 707

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNE 540
             + +   + +A     HD    I+   + ++++  R       + +  LD FL   L  +
Sbjct: 708  HRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPDASREQALANLDAFLKLALDLD 767

Query: 541  QNSYSSLQELISELEQ---YPPTIKRA------------------HSANHNEVRIMTVHT 579
               Y SL + ++EL                                S   + V+I+TVH 
Sbjct: 768  GGRYPSLPKFMTELRAIRQGDEEESPDEGVQGDAAETPDAIDAELASEGLDAVQILTVHA 827

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            +KGLE+P V L+D+            +       + P       ++  R      L    
Sbjct: 828  SKGLEAPFVVLLDSHHSDTRADTAGILIDWLPGAEAPAHFSAFGKTAERGRARDPLFTQE 887

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                + E   LLYV MTRA   LI+   +N  +                    + V +  
Sbjct: 888  AALAERENWNLLYVAMTRARQALIVSGVANKRDG----------------AAAQAVDEGD 931

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            +        W     +       P+ + E   + +         +   +  +     +  
Sbjct: 932  VPEVDGSASWYTLLATAGVATPAPVAQAEAGGEAV-HAGPRAVSYHDFREPLTVTVRIGG 990

Query: 760  STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPA 818
            +        N    + D     +G ++H +L+ +       +  +         A     
Sbjct: 991  TAERVADAPNAADAIFDQGAVAQGELLHAVLERLTRHGKPEQVPDAAAIARWFGATGITD 1050

Query: 819  KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI 878
             +      ++  +L    +        +       ++  P   ++   RID++      +
Sbjct: 1051 ADAARAAEAVRCMLAAEALAHVFDAARFDVAHNEVELFSPDGALL---RIDRLIERGGEV 1107

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
             + +YK    +P E       +  QL  Y   +   YP +++    +  ++ +   +  
Sbjct: 1108 LVVDYKL-RLLPVE----RVAYADQLRGYVAAVAPMYPGRTVRAG-VATAQGEWIDLDA 1160


>gi|225868711|ref|YP_002744659.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp.
            zooepidemicus]
 gi|251764568|sp|C0MGY6|ADDA_STRS7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|225701987|emb|CAW99551.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi
            subsp. zooepidemicus]
          Length = 1214

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 151/1015 (14%), Positives = 327/1015 (32%), Gaps = 129/1015 (12%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             +++ + +   +           +               K  + L+           F  
Sbjct: 237  PDQAVDTLLACMQDTADQLRDLTDMEGYAQTTKAGKLTAKYTKHLKMIDSLYEWALHFDS 296

Query: 69   LSS-FFLTQKFTPQKNIITQEIN-KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L     L Q       ++    +   +       K  Q++ +  R         + +L  
Sbjct: 297  LYGKARLGQLAQELTALLPSGADITVAGHKYPIFKSLQEQLVGFRHLETILAYQQESLPL 356

Query: 127  LTLAKYLN----AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            L + +         Y  AK +    +F D+     ++L++   +  IR       + +++
Sbjct: 357  LEVLQAFVISFSEAYLAAKMQENAFEFSDIAHFAIEILQQ---APDIRQAYQGHYHEVMV 413

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+P+   ++ +
Sbjct: 414  DEYQDNNHMQERLLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              Q    +      +I L  +FRS +++L V + VFS   +            +  +   
Sbjct: 463  DYQSNPEH----GKLILLKENFRSQSEVLNVTNAVFSRLMDESLGEITYDDKHQLVAGSE 518

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
             Q          +  +++    +     S  D +            +A  I  +   +  
Sbjct: 519  AQKQLHPENRAQLLLYNTDQAQEGTEEASTNDGISAG-----EVTLVAKEIIRLYNEE-- 571

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421
                    +  +DI +LV  R     I  +     N Y I  V    +      + +  +
Sbjct: 572  -------KVAFEDITLLVSSRTRNDTIFQVF----NQYGIPLVADGGQENYLKSVEVMVM 620

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA------- 474
            +   R I +  +D + V +++SP+F+F ED + +I  Q    +    +  K +       
Sbjct: 621  LDTLRSINNPLNDYALVALMRSPMFSFDEDQLARISLQSSSQDQPQAFYDKLSNSLRGQG 680

Query: 475  -------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVI 526
                      ++K     + + +    A+  S ++    +   +       S+    +  
Sbjct: 681  EHPGLIGQELMTKLVDFDRTLSDWRQFAKLHSLYELIWKVFNDRFYFDFVASQPKAEQAQ 740

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              L        + EQ+ Y  L   I      LE              + V +MT+H +KG
Sbjct: 741  ANLYALAIRADQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVERPKHAVNLMTIHKSKG 800

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-----------IWIPQSKSRNNI 631
            LE   VF+++   +         + +                      +   +       
Sbjct: 801  LEFHYVFILNCDKRFAMADLQAPIILNRDEGIGIKYVANVKELLRDEKLASLKVTMETLP 860

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------------SN 672
                 + L+ +T  E  RLLYV MTRA  ++ +   ++                    S 
Sbjct: 861  YQLNKQQLRLATLSEQMRLLYVAMTRAEKKVYLVGKASKEKIQAKTADNSSEGRLALASR 920

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLEREE 728
            E+  + + W   +  +F  ++    ++  +  +       +  +       +     + E
Sbjct: 921  ERLLSFQDWLLAITATFSKEDLFIDVRFVDDSDLTAEAVGQLRSSGLLQADDLKDNRQTE 980

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768
             I + +D      KL +  +  I  P +  PS + T  +                     
Sbjct: 981  DIARALDMLDKVSKLNASYQAAIELPTVRTPSQLKTLYEPLMDTDGVDIIDQPYHRPKSF 1040

Query: 769  --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-L 825
                 S     +    G  +H+L+Q I    +    +   +          A+    + +
Sbjct: 1041 DLPDFSKKKAVEPSQIGSSLHELMQRIPMSDQVTAGDIEQAL---QFVSADAEVKARIDI 1097

Query: 826  LSITRLLENPMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFI 880
              +T       +   +       + E   +   K +  ++  ++ G ID   + +  I +
Sbjct: 1098 KKVTSFFATTELGQLLQEHHQCLHREAPFAMLKKDSLSQEQYVVRGIIDGYLLFEDRIVL 1157

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            F+YKT H+  Q    +   +  Q+ +Y + L  SY    +   L+ +   ++ ++
Sbjct: 1158 FDYKTDHY--QHSAELKQRYQQQMDLYAEALSQSYGIARIEKYLVLMGGSQLEVV 1210


>gi|229009788|ref|ZP_04167008.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048]
 gi|228751406|gb|EEM01212.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048]
          Length = 743

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 121/690 (17%), Positives = 225/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++   L            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNSNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|229095008|ref|ZP_04226004.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29]
 gi|229113961|ref|ZP_04243387.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3]
 gi|228669420|gb|EEL24836.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3]
 gi|228688338|gb|EEL42220.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29]
          Length = 749

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 227/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLATRF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R+   + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYREMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|165933684|ref|YP_001650473.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa]
 gi|165908771|gb|ABY73067.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa]
          Length = 822

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 173/622 (27%), Positives = 297/622 (47%), Gaps = 39/622 (6%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              F T+    +K+++++E+ +K P L  +L+K   E  ++ +     ++   T     L
Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL  +    W+ +K++ EINHIL+DE QDTS
Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L QW +I +L  +F   +       ++F VGD+KQSI+SF GA+ +         +   T
Sbjct: 357 LSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           NA +KF  I L  S+RS  +IL     V    ++       +   +   SS     G+V 
Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPSLFLANNPL--ISSFRTHQGSVT 471

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W  V S+       ++  W    D    +S+A +L  +I   I   I ++ I  +   R
Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESEEILPSTANR 526

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KD ++LVRKR +    +       +  K+ V  +DR  L ++L I DL++L +F+L
Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +DDL+   +LKSP+   SE  ++K+   + E               +   + +   + 
Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYKLLVNKRENS---------LWDILPSHEEIYNKLD 633

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            LI I +     +FF L++     R+ +     ++  D+++E L  +     +  +SLQ 
Sbjct: 634 SLIEIYKTSIVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKNYANDIDNSLQG 689

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++  E     IKR    + +++R+MTVH +KGLE+P+V L D+ +   S          
Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             + DD G   +   +      + +L +  K    +EY RLLYV MTRA D+LIIC    
Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798

Query: 670 TSNEKKSNQRTWYDMVYDSFHN 691
            SN+  + +  WY++   +   
Sbjct: 799 -SNKSTTPKNCWYEIAKQTCDQ 819


>gi|157149814|ref|YP_001450693.1| first chain of major exonuclease RexA [Streptococcus gordonii str.
            Challis substr. CH1]
 gi|251764541|sp|A8AY33|ADDA_STRGC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|157074608|gb|ABV09291.1| first chain of major exonuclease RexA [Streptococcus gordonii str.
            Challis substr. CH1]
          Length = 1216

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 157/995 (15%), Positives = 324/995 (32%), Gaps = 139/995 (13%)

Query: 36   SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95
              +       +L     L    +    ++ F +L    L  + +  + +      ++  +
Sbjct: 263  EFAGAKYQENVLLALDKLGSLQELSSEQDYFRVLKDVVLLSRASGGRALTITTRKEELKE 322

Query: 96   LKEKLKKSQ-DEFIKIRDRFNTYKMFKSTL-----------ASLTLAKYLNAHYEEAKKK 143
            L +   + + +    +R   ++   F+                          Y E KK 
Sbjct: 323  LADTFNQGRKERIEHLRGLESSIYQFEFLEKYQDDSLPLLDLLRDFMSDFTQTYLERKKT 382

Query: 144  NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
                +F D+      +L+       +R    +  + +++DE QDT+  Q  ++  L    
Sbjct: 383  ENAFEFGDISHFAIQILEDFP---QVRSFYQERYHEVMVDEYQDTNHTQERMLELL---- 435

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                   S+    F VGD KQSIY F  A+P+    + R+ Q        +  +I L  +
Sbjct: 436  -------SNGYNRFMVGDIKQSIYRFRQADPQIFNDKFRLYQAD----PSQGKLIVLKEN 484

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            FRS  ++L   + VF    + Q    +   T    +    +               ++  
Sbjct: 485  FRSHVEVLEATNDVFKRLMDEQVGEINYDETHYLVAGNPTKA---------SPDPKNRAE 535

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                  T   + L +ES ++     +   I  +   +          +  KDI +L   R
Sbjct: 536  FLLYDSTVASEELSEESISAGEVSLVIKEIIRLHEEE---------AVAFKDITLLTASR 586

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                    +       + I +V +         + +  ++   R I +  +D +   +LK
Sbjct: 587  T----RNDIILAEFAKHNIPLVPDGGEDNYLQSVEVMVMLDTLRTINNPLNDYALTALLK 642

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFAN--------------CGISKFQHVIKYI 488
            S +F+F ED++ +I  Q+ + ++     +K  N                  K +   K +
Sbjct: 643  SAMFDFGEDELARIALQKSQEKSQENLYEKLENALTNQGLHPDLILPDHKKKLELFQKTL 702

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
                  A+  S +D    I   +   +   +   G +    L          E++S+  L
Sbjct: 703  LSWRTFAKTHSLYDLIWKIYQDRFYYEYVGALPNGAQRQANLYALSLRANDYEKSSFKGL 762

Query: 548  QELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               IS +++            ++A  + V +MTVH +KGLE   VFL++           
Sbjct: 763  SRFISMIDKILENQHDLASVPYAAPQDAVHLMTVHKSKGLEFKYVFLLNMDKAFNRQDTS 822

Query: 604  KKMHIMPSLNDD------------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
              + +                     +     +           ++ +K ++  E  RLL
Sbjct: 823  SSIILSRKNGIGIKYIADVEVEYPEKVKPRSIRLSMDTLPYQQNLEEIKLASLSEQMRLL 882

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQR-------------------TWYDMVYDSFHND 692
            YV MTRA  +L +    +    +K +                      W   +   F  D
Sbjct: 883  YVAMTRAETKLYLVGKGSQEKLEKRSWGQAEQGLLSASIRSQTTSFQDWLYAIQTVFSED 942

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLEREETIKQLMDEQKIPKKLFSPIK 748
            +    ++     +       +    +P    + T   + E I + +D  +   +L S  +
Sbjct: 943  QLAFDLRFVRDEDLTADKIGQIHHSNPFDADDLTDNRQSEDIGRALDILESVDRLNSQYR 1002

Query: 749  NDINEPYILNPSTIDTKGKT------------------------NLESLLSDNQTFNRGL 784
            + I  P +  PS I    +                            S  +       G 
Sbjct: 1003 SAIELPSVRTPSQIKKFYEPIMDTEGMDIIDERVAFRPQPNFDLPDFSRKAKVTGAQVGS 1062

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-- 842
             +H+L+Q I    +        S     A+    K+    L  I    E  +    ++  
Sbjct: 1063 AVHELMQRIPIDQKPDMAVLKLSLKQVQAEESVKKQID--LNKIASFFETRLGEILLANS 1120

Query: 843  CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
               + E   +   +     +D ++ G +D   + +  I +F+YKT  +       +   +
Sbjct: 1121 DKLHREAPFAMFKRDEISGQDFVLRGILDGYLLFEDRIILFDYKTDKYKEAS--ELIARY 1178

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             +QL +Y + L  SY    +   LI +   ++ ++
Sbjct: 1179 HSQLDLYAQALSRSYGISQIEKYLILLGGEQLQVV 1213


>gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille]
 gi|151281175|gb|ABR89585.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 1083

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 149/921 (16%), Positives = 310/921 (33%), Gaps = 109/921 (11%)

Query: 34   YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKS 93
             V+  +  G     ++A  +++A       E F  L++ F       +KN  T+ + K  
Sbjct: 253  QVAWLLGQGTAVNQERATAIEKAVTAGAALENFDALTNEFFDAGGKFRKNRATKNLTKAL 312

Query: 94   PD---------LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
             D          + + +   +   KI  R    K+     +  T+       Y+  K + 
Sbjct: 313  LDNLGEEGVYAFEVEFESIGEALKKILRRSMEPKVIALNRSLFTVGAAYLEIYQAVKAEQ 372

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             V DF DL      LL   + +A+++ ++D    H+L+DE QDT+ +QW ++++    + 
Sbjct: 373  RVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYKHVLLDEFQDTNPLQWSIVQA----WL 428

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +   ++F VGD KQSIY F  AEP+     + +   +  +  +         + 
Sbjct: 429  KAYGNETDRPSMFVVGDPKQSIYRFRRAEPRVFSAAREVLVAQGADFLRT------NQTR 482

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            R+   I+ V+++ F                   +++   + G V     V  +   +   
Sbjct: 483  RNARGIVDVLNESFRANPIYTA-----------QTTLSNEAGAVWQLPLVQQEKSEKVVW 531

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
               +         +E   +             +    + +       +  D+++LV+KR 
Sbjct: 532  SPANMRDPLTEPREEEEDAR-----RLQEGRAVAQAILRAREVTPGTKWSDVMLLVKKRT 586

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                     R       I    + R  L + L + DL+AL  F+++  D+L+   +LKSP
Sbjct: 587  HLSAYERALRE----AGIPFASDRRGGLLESLEVADLIALLTFLITPHDNLALAHVLKSP 642

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            +   +++D+  +  +  +T   +      A       Q  +  + + + +A     HD  
Sbjct: 643  IMGATDNDLIALALRAEKT---WWGRLHQAELNSEVLQRAVSLLEKWLELAARLPVHDLL 699

Query: 505  TLILGAKKGRQQFISRFGN----EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---- 556
              IL       ++          +V+  ++ F    L  +   Y SL + I  L +    
Sbjct: 700  DRILHEGDVVARYAQAASPLVRGQVLANIEAFTELALNLDAGRYPSLPKFIDALRRLQKS 759

Query: 557  --YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   +    A+ +  RI+T+H AKGLE+ +V L+D      +      +       D
Sbjct: 760  ADSDAPDEAEIDASLDAARILTIHGAKGLEADIVVLLDANHSDPARDDYGVLCEWKQEAD 819

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             P       +   R      L    ++   +E   LLYV  TRA   LI+   ++  +  
Sbjct: 820  APNHFSVFGRQAERGAARDYLFAEEEQLKTQEDWNLLYVATTRAKKLLIVSGVADARSAS 879

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
            ++               +  + +  L + +  +    +  +   P   PLE+ E      
Sbjct: 880  ENGVADGCWYARFQGAEEPELDQRVLVSDLKLE--AGFPLAIFSPPPLPLEQAEIPAAFS 937

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
              +                                             G+ +H L++ + 
Sbjct: 938  SAE------------------------------------------IEEGIALHALMERLT 955

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
                 +                  +  + + +    +L  P +        +       +
Sbjct: 956  QTWPVQIHAAP---VLAKWLPCSRELAEVVRVQADTILAQPELQRFFDPAQHRFARNEME 1012

Query: 855  INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            I           R D++ +    ++I +YK         +     + AQL+ Y    +D 
Sbjct: 1013 IVSSAG----VARFDRVVMFDDELWILDYK-----RNLFDSERVAYAAQLARYRLAAQDV 1063

Query: 915  YPNKSLVCLLIYVSEPKVFII 935
            +P   +   LI   +  +  +
Sbjct: 1064 FPGLKIRTALI-TVDGTLTEV 1083


>gi|299067242|emb|CBJ38439.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CMR15]
          Length = 1177

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 160/958 (16%), Positives = 328/958 (34%), Gaps = 82/958 (8%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
              +  D+  +  +                  T +  A+ L   S        F  L + F
Sbjct: 247  AALLADMLRVSGWLGQG--GAAEGKRAVQIETAVTAARAL-DLSDAAARRHAFEALFTAF 303

Query: 74   LTQKFTPQKNIITQEI-----NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             TQ   P+    T+ +        +  L +      +       R +  ++     A  T
Sbjct: 304  HTQAGKPRACKPTKALIKTIGEDAAQTLVDLHAALCEALAAYHARRHESRVRAVNAALFT 363

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            L   L   Y+  K++   +DF DL      L++  D +A+++ ++D    H+L+DE QDT
Sbjct: 364  LGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            + +QW ++    + +  G     +  T+F VGD KQSIY F  A+ +     + +     
Sbjct: 424  NPMQWRIL----QGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADARLFDAARDMLVAAF 479

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +++    + R+   +L  V+ VF +          +  +    +     VG  
Sbjct: 480  -----DATVLRTNRTRRNAPAVLEWVNAVFLLARARGDYPIYAEQSTGVDAP----VGRA 530

Query: 309  QLWEQVVSQHDSQCNP-QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             L   V     +Q +        +       +S      R++A  +  +   + +  NG 
Sbjct: 531  LLLPLVPVPEAAQADETAPRDSLTEPREEAGDSQRYDEGRQVAACLRALHAGERVRENGA 590

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +R ++  D  +LVR+++         R    D  +  +   R  L   L   DL AL  F
Sbjct: 591  ERSVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDF 646

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEYIQKFANCGISK--FQH 483
            +++ + DL    +L+SP+F  ++DD+  +          T +E +   A+   +   ++ 
Sbjct: 647  LMTPQADLPLAHVLRSPIFAVTDDDLIALAQAGEGASAPTWWERLTALADRPHAAAQWRR 706

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRN 539
              + +   + +A     HD    I+   + ++++  R       + +  LD FL   L  
Sbjct: 707  AHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANREQALANLDAFLKLALDL 766

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANH---------------------NEVRIMTVH 578
            +   Y SL + ++EL       +                            + V+I+TVH
Sbjct: 767  DGGRYPSLPKFMAELRAIRQGDEEESPDEGVQADAAEAPDAIDAELASEGLDAVQILTVH 826

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE+P V L+D+            +   P   + P       ++  R      L   
Sbjct: 827  ASKGLEAPFVVLLDSHHSDTRADTAGILIDWPPGAEAPAHFSAFGKAAERGRARDPLFAQ 886

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 + E   LLYV MTRA   LI+   +N  +                    + V + 
Sbjct: 887  EAALAERENWNLLYVAMTRARQALIVSGVANKRDG----------------AAAQAVDEG 930

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
               +      W     +       P+E         D        +   +  +     + 
Sbjct: 931  DAPDVDGSASWYTLLATAGAATPAPVEAAAGTG-GADHAASQAVAYHDFRVPLTVTVRIG 989

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP 817
             +        +    + D     +G ++H +L+ +       +  +         A    
Sbjct: 990  GAAERVADAPDTADAIFDQGAVAQGELLHAVLERLTRHGKPEQVPDAAAIARWFGATGIT 1049

Query: 818  AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN 877
              +      ++ R+L    +        +       ++  P+  ++   RID++      
Sbjct: 1050 DADAARAAEAVRRMLAAEALAHVFDPARFDVAHNEVELFSPEGALL---RIDRLIERGDE 1106

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            + + +YK    +P E       +  QL  Y   +   YP +++    +  ++ +   +
Sbjct: 1107 VLVVDYKL-RLLPVE----RAAYADQLRGYAAAVAPIYPGRAVRAG-VATAQGEWIDL 1158


>gi|229159445|ref|ZP_04287463.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803]
 gi|228624016|gb|EEK80824.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803]
          Length = 754

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDAGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|239825841|ref|YP_002948465.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70]
 gi|239806134|gb|ACS23199.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70]
          Length = 732

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 123/694 (17%), Positives = 232/694 (33%), Gaps = 136/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++ Q L   +  +     
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERVQGLLGGAAEEIWIST 91

Query: 66  FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106
           F  +    L                  T + +  KNI+  + I+ K  D +  L    + 
Sbjct: 92  FHSMCVRILRRDIDRIGIDRNFSILDTTDQLSVLKNILKEKNIDPKKFDPRAILGTISNA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K   S      +   +   Y++   +N  LDF+DLI+ T  L ++    
Sbjct: 152 KNELLTPEKFAKKVSSYYE--KIVSDVYEEYQKRLLRNHALDFDDLIMTTIQLFER---V 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +      +  +I IDE QDT+  Q+ +++ L   F          + +  VGD  QSI
Sbjct: 207 PEVLEHYQYKFQYIHIDEYQDTNRAQYVLVKMLASRF----------KNICVVGDADQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  ++              +I L  ++RST  IL   ++V     N + 
Sbjct: 257 YRWRGADIQNILSFEKDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW             Q+  +    +   +       A
Sbjct: 309 KK---------------------LW-------TENPEGQKIVYYEAMNESDE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +   I   + +            +  D  +L R    + ++  +         I    
Sbjct: 334 QFVVGKIKEYVDSGKR---------RYSDFAILYRTNAQSRVMEEVL----LKSNIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  D   IKD++A  R I +  DD+S + ++  P        I KI         +
Sbjct: 381 VGGLKFYDRKEIKDVLAYLRVIANPNDDISLLRIINVPKRGIGVSSIDKIVSYASENGLS 440

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           V+E + +  +        +      + + +   + ++ S  +    +L     R+   + 
Sbjct: 441 VFEALGELEHIGLSARTAASLIEFRRQLEQWAQLQEYVSVTELVEEVLDKSGYREMLKAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAH--SANHNEVRI 574
              E     + +DEFL+ T   E  +   SL   +++L       +       N + V +
Sbjct: 501 KTLEAQSRLENIDEFLSVTKHFENVSEDKSLIAFLTDLALISDIDQLNETNGENQDAVVL 560

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H+AKGLE PVVFL+     +F H                                  
Sbjct: 561 MTLHSAKGLEFPVVFLIGMEEGIFPHSRSLDDG--------------------------- 593

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                     EE  RL YVG+TRA ++L +    
Sbjct: 594 -------DEMEEERRLAYVGITRAEEELFLTSAQ 620


>gi|229828348|ref|ZP_04454417.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM
            14600]
 gi|229792942|gb|EEP29056.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM
            14600]
          Length = 1315

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 163/1068 (15%), Positives = 327/1068 (30%), Gaps = 185/1068 (17%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS----L 68
             + +   +          + + + LS   G P   +  +      ++    E FS    +
Sbjct: 225  VQGLTNRIKSQAEACEDLLEEAMQLSRLPGGPHYQEAIEADLAYCESIREAEDFSRIALI 284

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF------IKIRDRFNTYKMFKS 122
            LS     +    +K +  +E+  ++ DL+++ KK  ++           +      M   
Sbjct: 285  LSGIQWKKLSGKRKGV-DEELKARAKDLRDQSKKVFEQLRRDYSGDPAAEFDKLSVMAPY 343

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA----WIRYKIDQEIN 178
                L L K     +E  K+K  V+DF DL      +L+     A         + ++  
Sbjct: 344  LKTLLDLTKEYAVSFEACKRKKNVVDFADLEHYALRILRDPADPAHPMTETAENLCRQYA 403

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             ++IDE QD++ +Q  ++ ++         +       F VGD KQSIYSF  A P+   
Sbjct: 404  EVMIDEYQDSNNLQEAILSAVA-------GSDQGEHKTFMVGDVKQSIYSFRQARPELFN 456

Query: 239  REKRINQKRATNAGQKF--SIIELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTT 294
             + +   K    + +      I+L  +FRS  +IL   + +F     E+  G++      
Sbjct: 457  SKLKSYDKLTAESQKTVRSQRIDLSRNFRSRQEILDFANHIFYRVMQEDLGGVAYHEDVA 516

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            +   +        V           S      E      ++L  E  A + A  I   I 
Sbjct: 517  LHLGADYPATAAAV---SGKAEDPYSAELILCEQDMEALEALGLEDKAELEANMIGERIQ 573

Query: 355  NMIGTDTIF-------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
             ++    +             R ++ +DI++L+R          +         I     
Sbjct: 574  RLMKEQKVVNEEAEEGDQNPLRRLRYQDIVILLRSPGSN---GQVFVDRLTQMGIPAHIT 630

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--FSEDDIFKICTQRH---- 461
                  D + +   +AL   + +++DD S   ++ S +F   F+ED ++ I +       
Sbjct: 631  SGKGYFDTVEVSRFLALLSLLNNRQDDRSLAAVMLSHVFGEPFTEDQLYLIRSAYPRLTT 690

Query: 462  -----------ETETVYE-------------------------YIQKFANCGISKFQHVI 485
                       +   ++E                         ++ +       K     
Sbjct: 691  GQDRGDESRDIQNACLWESLEAMESYSRGILAGEKEDSDQRPGHLLELDTSLPQKVLDFC 750

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSY 544
              +        +   H     +L          +  G +     L + ++  +R E +SY
Sbjct: 751  DRLEAARARIPYTPIHRLIEELLDETAYLNYVTALPGGQIRRANLLKLVDEAIRFEGSSY 810

Query: 545  SSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              L   ++ +++        +         + VRI ++H +KGL+ PVVF+   G +   
Sbjct: 811  RGLYRFMNYIQKLRTYNVDLSAAELIGEEDDAVRITSIHKSKGLQYPVVFVCGLGQKFNM 870

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                  M I   L           ++ S +     +    K+++  E  R+LYV +TRA 
Sbjct: 871  RDSSGDMLIEMDLGISLRTRNAAKRTMSDSLFHRAVSDQRKENSLAEEMRVLYVALTRAK 930

Query: 660  DQLIICK------------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK-------- 699
            ++LI+                 T  +       ++  +    + D  +  +         
Sbjct: 931  EKLILSGSLSRLKERLDQEWEATRGKGDGYVLPYHRRMGAKNYLDWILPSLASYGELYRQ 990

Query: 700  --------LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS------ 745
                       ++   +  A        + TP    E +K L   + + + L        
Sbjct: 991  SIHCYIPGEDGALTWGQEQAESPGRADCDGTPANHLEDLKDLPGTEALLQYLRRVFAYRY 1050

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ--------------------------- 778
            P     N     + S I               +                           
Sbjct: 1051 PYAASQNYKSKYSVSEIKHASMQLGMGEKEGQEIFRPVDEDRYVPEFARAVTEERGQNNK 1110

Query: 779  ----TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYK-NLLLSITRLL 832
                   RG  +H++++ +    E    +        +       +E    L   I   L
Sbjct: 1111 KIHPGALRGTAMHRVMECLDFAREDYADSLGEQLDQMRADGRLSEEELGLVLPDRIQSFL 1170

Query: 833  ENPMMTTAMSCDS----YSEVSVSGKI-------------------------NCPKKDII 863
            +  M             Y E      +                            +  I+
Sbjct: 1171 KQDMADRIHRSAVEGRLYREQPFVMGLRPKEIDRLMGRQPSAASKESETDAAAVGENMIL 1230

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            + G ID   I    IF+ +YKT     Q+   +   + AQL +Y + +
Sbjct: 1231 VQGIIDLFFIEDGKIFLLDYKTDRV--QDESELVGRYQAQLLLYAQAV 1276


>gi|157828959|ref|YP_001495201.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith']
 gi|157801440|gb|ABV76693.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith']
          Length = 822

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 173/622 (27%), Positives = 297/622 (47%), Gaps = 39/622 (6%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              F T+    +K+++++E+ +K P L  +L+K   E  ++ +     ++   T     L
Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL  +    W+ +K++ EINHIL+DE QDTS
Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHKWLLHKLESEINHILVDEAQDTS 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L QW +I +L  +F   +       ++F VGD+KQSI+SF GA+ +         +   T
Sbjct: 357 LSQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLRNFNLVNERLKANLT 413

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           NA +KF  I L  S+RS  +IL     V    ++       +   +   SS     G+V 
Sbjct: 414 NANKKFKNITLEYSYRSCTEILQFTYNVLKNIKSNYPSLFLANNPL--ISSFRTHQGSVT 471

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W  V S+       ++  W    D    +S+A +L  +I   I   I ++ I  +   R
Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESEEILPSTANR 526

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KD ++LVRKR +    +       +  K+ V  +DR  L ++L I DL++L +F+L
Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +DDL+   +LKSP+   SE  ++K+   + E               +   + +   + 
Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYKLLVNKRENS---------LWDILPSHEEIYNKLD 633

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            LI I +     +FF L++     R+ +     ++  D+++E L  +     +  +SLQ 
Sbjct: 634 SLIEIYKISIVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKNYANDIDNSLQG 689

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++  E     IKR    + +++R+MTVH +KGLE+P+V L D+ +   S          
Sbjct: 690 FVAWFENNDIYIKRD-IEHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             + DD G   +   +      + +L +  K    +EY RLLYV MTRA D+LIIC    
Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 798

Query: 670 TSNEKKSNQRTWYDMVYDSFHN 691
            SN+  + +  WY++   +   
Sbjct: 799 -SNKSTTPKNCWYEIAKQTCDQ 819


>gi|229101109|ref|ZP_04231875.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28]
 gi|228682237|gb|EEL36348.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28]
          Length = 749

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++   L            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDILVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLATRF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R+   + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYREMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|326203370|ref|ZP_08193235.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM
           2782]
 gi|325986628|gb|EGD47459.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM
           2782]
          Length = 783

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 108/633 (17%), Positives = 210/633 (33%), Gaps = 125/633 (19%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           L +     KN   + + +     K++L  ++    +    F   K+             +
Sbjct: 124 LKELNLNDKNFPPKSVLETIGKQKDELIDAEQYEKQYASDFRMGKI-----------AKV 172

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+  K N  LDF+D+I+NT  L ++      +     +   +IL+DE QDT+  Q+
Sbjct: 173 YKLYEKKLKANNALDFDDIIMNTIKLFERHPE---VLEYYQRRFRYILVDEYQDTNTAQY 229

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            ++R +++          +   L  VGD+ QSIY + GA  + +L  ++  +K       
Sbjct: 230 TLVRKMSQ----------AHENLCVVGDDDQSIYGWRGANIRNILDFEKDFKK------- 272

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I+L  ++RST +IL   + V       +  S               + G+  +   
Sbjct: 273 -CCTIKLEQNYRSTQNILDAANHVIGNNTGRKNKSL----------WTDNKGGSKIV--- 318

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 + +  +    A   A  I  +I  +           + 
Sbjct: 319 ----------------------ICENDNEHEEALYTAREIQRIISDEDR---------KY 347

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           KD  VL R    + ++  +         I           D   IKD++A  R + +  D
Sbjct: 348 KDFAVLYRINAQSRVLEEMF----MREGIPYKIVGGQKFYDRKEIKDIIAYMRLVQNPGD 403

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKY 487
           ++S   ++  P     +  +            +++  I              K       
Sbjct: 404 NVSLKRVINVPKRGIGDATVENAEVLAYQTNVSLFTVISNTEEFPSLKRAAQKLGSFSLM 463

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-QNS 543
           I++   + +  S      +++      +++      E     + + E  +  L  E Q+ 
Sbjct: 464 INKFRTMKENMSISQLLDVVVEDSGILREYELENTVEAQSRIENIKELKSVALEFEKQSE 523

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            +SL+E ++ +         +   + + V +MT+H+AKGLE PVVF+      VF     
Sbjct: 524 DNSLEEFLAHISLVSDID--SLQEDQDYVVLMTMHSAKGLEFPVVFIPGLEEGVFPGYRA 581

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                    EE  RL YVG+TRA ++L 
Sbjct: 582 ITEGP---------------------------------EQLEEERRLCYVGITRAREKLY 608

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
           +      +    S+       + +         
Sbjct: 609 MSNARFRTLFGNSSYNRPSRFLAEIPEELVEYP 641


>gi|42779415|ref|NP_976662.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987]
 gi|42735331|gb|AAS39270.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987]
          Length = 747

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|323351323|ref|ZP_08086979.1| exonuclease RexA [Streptococcus sanguinis VMC66]
 gi|322122547|gb|EFX94258.1| exonuclease RexA [Streptococcus sanguinis VMC66]
          Length = 1224

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 154/1016 (15%), Positives = 322/1016 (31%), Gaps = 131/1016 (12%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +   +          +  +              T+L     L    +T  I ++   LS 
Sbjct: 245  ALLELEAFFSAHMEHEGREFAGAKYQENVQDALTLLAGLNELSSIEETAQILKQIVALSQ 304

Query: 72   FFLTQKFTPQ--------KNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKS 122
                Q FT +        K  + ++ N+    + E+L+    +  ++     +  +    
Sbjct: 305  LSNGQVFTARVGKNADELKKEMAKDYNEARKPMIERLRSFDQQLYQLDFIEQHQDECLPL 364

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                          Y E KK     +F D+     ++L+       +R    +  + +++
Sbjct: 365  VELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE---VRRFYQERYHEVMV 421

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT+  Q  ++  L              +  F VGD KQSIY F  A+P+    + +
Sbjct: 422  DEYQDTNHTQERMLDLLA-----------RGQNRFMVGDIKQSIYRFRQADPQIFSDKFK 470

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              Q+       +  +I L  +FRS  ++L   + VF    + +    D   T    +   
Sbjct: 471  AYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNP 526

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
             +             + +     + S  S  +   +    ++ A  +   I  +I     
Sbjct: 527  VKREP-------NLANRASFLIYEGSKESPEEEADEGLPQAVSAGEVDLVIKEIIR---- 575

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDL 421
                 +  +  KDI +L   R        L       ++I +V +D        + +  +
Sbjct: 576  --LHNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLVPDDGAANYLQSVEVLVM 629

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF-------- 473
            +   R I +  +D +   +LKSP+F+F ED++ ++  Q  +  +     +K         
Sbjct: 630  LDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQERSQENLYEKLLNVLQGRG 689

Query: 474  ------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVI 526
                        K QH  + +      ++  S +D    I   +           G +  
Sbjct: 690  LNPALVTQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQDRFYYDMVGTLTNGAQRQ 749

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKG 582
              L          E++S+  L   I  +++             +   + VR+MT+H +KG
Sbjct: 750  ANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPVAVPKDAVRLMTIHKSKG 809

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSKSRNN 630
            LE   VFL++             + +  +                        +      
Sbjct: 810  LEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVEDPYAPNQLRISMDTL 869

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS------------------- 671
                 +  L+ ++  E  RLLYV MTRA  +L +    +                     
Sbjct: 870  PYQQNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEALDKRQWGKSQQGRLSASL 929

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLERE 727
              + SN + W   +   F ++    + +             + +        +     + 
Sbjct: 930  RSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGQINEPVLFPADDLANNRQT 989

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------------------------D 763
            + I++ +D  +   +L S  ++ I  P +  PS I                         
Sbjct: 990  DDIRRALDILESVDQLNSQYRSAIELPSVRTPSQIKKFYEPIMDMDGLDIMDERAAFRPQ 1049

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
               +       +       G  +H+L+Q I            ++     A      + + 
Sbjct: 1050 PSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSRPSMAVLRSALAQVQADEAVKNQIQ- 1108

Query: 824  LLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIF 879
             L  I    E  +    +  S     E   +   +     ++ ++ G +D   + +  I 
Sbjct: 1109 -LPKIASFFETDLGRLLIENSDRVRREAPFAMLKQDEDSGQEFVLRGILDGYLLFEDRII 1167

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            +F+YKT  +       +   +  QL +Y + L  SY    +   LI +   ++ ++
Sbjct: 1168 LFDYKTDKYKDSS--ELIARYHGQLDLYAQALSRSYGISQIEKYLILLGGEQLQVV 1221


>gi|300691831|ref|YP_003752826.1| helicase, uvrD subfamily [Ralstonia solanacearum PSI07]
 gi|299078891|emb|CBJ51552.1| putative helicase, uvrD subfamily [Ralstonia solanacearum PSI07]
          Length = 1178

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 160/976 (16%), Positives = 321/976 (32%), Gaps = 80/976 (8%)

Query: 1    LKNRFGLSL--NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
            L +  G     +   E +   +      +VS        +       I       +    
Sbjct: 227  LDDLLGDDAHTDPLIEALQDAVLLADMLRVSGWLGQGGAAEGKRAVQIETAVTAARALDL 286

Query: 59   TQCIEER--FSLLSSFFLTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIR 111
                  R  F  L   F TQ   P+    T+ + K   +     L +      +      
Sbjct: 287  PDEAARRHAFEALFIAFHTQAGKPRACKPTKALVKAIGEDCAQTLVDLHAALCEALAAYH 346

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
             R +  ++     A  TL   L   Y+  K++   +DF DL      L++  D +A+++ 
Sbjct: 347  ARRHESRVRAINAALFTLGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQV 406

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            ++D    H+L+DE QDT+ +QW ++    + +  G     +  T+F VGD KQSIY F  
Sbjct: 407  RLDARYKHLLLDEFQDTNPMQWRIL----QGWLRGYEGTGTRPTVFLVGDPKQSIYRFRR 462

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A+ +     + +            +++    + R+   +L  V+ VF            +
Sbjct: 463  ADARLFDAARDMLVAGFEA-----TVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYA 517

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
              +    +        + L    V Q             +       +S       ++A 
Sbjct: 518  EQS---TAVDAPVGQALLLPLVPVPQAVQSDETTPRDSLTEPREEAGDSQRYDEGCQVAA 574

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             +  +   + +  NG +R ++  D  +LVR+++         R    D  +  +   R  
Sbjct: 575  CLRALHVGERVRENGAERPVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGG 630

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEY 469
            L   L   DL AL  F+++ + DL    +L+SP+F  ++DD+  +          T +E 
Sbjct: 631  LLATLEALDLCALLDFLMTPQADLPLAHVLRSPIFAVTDDDLIALARAGEGAFAPTWWER 690

Query: 470  IQKFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGN 523
            +   A    +    +   + +   + +A     HD    I+   + ++++  R       
Sbjct: 691  LTALAGQPHAAAQLRRAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEANRE 750

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRA---------------- 564
            + +  LD FL   L  +   Y SL + ++EL                             
Sbjct: 751  QALANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGEAAEAPDTIDA 810

Query: 565  --HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
               S   + V+I+TVH +KGLE+P V L+D+            +   P   + P      
Sbjct: 811  ELASEGLDAVQILTVHASKGLEAPFVALLDSHHSDTRADTAGILIDWPPGAEAPAHFSAF 870

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             ++  R      L        + E   LLYV MTRA   LI+   +N  +          
Sbjct: 871  GKTAERGRARDPLFAQETALGERENWNLLYVAMTRARQALIVSGVANKRDG--------- 921

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                      + V +           W     +       P+E         D       
Sbjct: 922  -------AAAQAVDEGDAPEVDGSASWYTLLATAGVATPAPVEAAAAASTGADHAASQAV 974

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKR 801
             +   +  +     +  +             + D     +G ++H +L+ +       + 
Sbjct: 975  AYHDFRVPLTVTVRIGGAAERAADAPGTADAIFDQGAVAQGELLHAVLERLTRHGKPEQV 1034

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
             +         A      +      ++ R+L    +        +       ++  P   
Sbjct: 1035 PDAAAIARWFGATGVTDADAARAAEAVRRMLAAEALAHVFDPARFDVAHNEVELFSPDGM 1094

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
            ++   R+D++      + + +YK    +P E       +  QL  Y   +   YP +++ 
Sbjct: 1095 LL---RVDRLIERGDEVLVVDYKL-RLLPVE----RAAYADQLRGYVAAVAPIYPGRAVR 1146

Query: 922  CLLIYVSEPKVFIIPQ 937
               +  ++ +   +  
Sbjct: 1147 AG-VATAQGEWIDLDA 1161


>gi|228899022|ref|ZP_04063295.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
 gi|228860597|gb|EEN04984.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
          Length = 749

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + +              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDLQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|229021877|ref|ZP_04178447.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272]
 gi|228739423|gb|EEL89849.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272]
          Length = 747

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLATRF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKITKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|228937586|ref|ZP_04100224.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970473|ref|ZP_04131124.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977042|ref|ZP_04137445.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407]
 gi|228782659|gb|EEM30834.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407]
 gi|228789205|gb|EEM37133.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822067|gb|EEM68057.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938079|gb|AEA13975.1| DNA helicase II [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 753

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 120/690 (17%), Positives = 225/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++   L            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + +              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDLQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|75759917|ref|ZP_00739988.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218895412|ref|YP_002443823.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842]
 gi|74492584|gb|EAO55729.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218541975|gb|ACK94369.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842]
          Length = 753

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + +              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDLQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|229015685|ref|ZP_04172668.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273]
 gi|228745602|gb|EEL95621.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273]
          Length = 751

 Score =  331 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLATRF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|327474835|gb|EGF20240.1| exonuclease RexA [Streptococcus sanguinis SK408]
          Length = 1224

 Score =  331 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 158/1033 (15%), Positives = 327/1033 (31%), Gaps = 138/1033 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQ 60
             + F       +  I   LW L  F  + +       +       +      L   ++  
Sbjct: 228  HSDFAAERERIFGQIKSALWELGAFFSAHLEHEGREFAGAKYQENVQDALTALAGLNELS 287

Query: 61   CIEERFSLLSS--------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
             IEE   +L                  + +     K  + ++ N+    + E+L+    +
Sbjct: 288  PIEETAQVLKQIVALSQLSNGQAFTARVGKNADELKKEMAKDYNETRKPMIERLRSFDQQ 347

Query: 107  FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              ++     +  +                  Y E KK     +F D+     ++L+    
Sbjct: 348  LYQMDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIEILETFPE 407

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +R+   +  + +++DE QDT+  Q  ++  L           S  +  F VGD KQS
Sbjct: 408  ---VRHFYQERYHEVMVDEYQDTNHTQERMLDLL-----------SRGQNRFMVGDIKQS 453

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  A+P+    + +  Q+       +  +I L  +FRS  ++L   + VF    + +
Sbjct: 454  IYRFRQADPQIFSDKFKAYQED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEE 509

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                D   T    +    +             + +     + S  S  +   +    ++ 
Sbjct: 510  VGEIDYNETHYLVAGNPSKREP-------NPANRASFLIYEGSKESPEEEADEGLPQAVS 562

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A  +   I  +I          +  +  KDI +L   R        L       Y+I +V
Sbjct: 563  AGEVDLVIKEIIR------LHNEEGVAFKDITLLTASRT----RNDLILAAFEQYQIPLV 612

Query: 406  GNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +D        + +  ++   R I +  +D +   +LKSP+F+F ED++ ++  Q  +  
Sbjct: 613  PDDGAANYLQSVEVLVMLDTLRTINNPLNDYALTALLKSPMFDFGEDELARLSLQASQER 672

Query: 465  TVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +     +K                     K QH  + +      ++  S +D    I   
Sbjct: 673  SQENLYEKLLNALQGRGLHPALITQELQKKLQHFHETLQGWRTYSKTHSLYDLIWKIYQD 732

Query: 511  KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
            +           G +    L          E++S+  L   I  +++             
Sbjct: 733  RFYYDMVGTLVNGAQRQANLYALSLRANEYEKSSFKGLSRFIRMIDRILENQHDLASVPV 792

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------- 615
            +A  + VR+MT+H +KGLE   VFL++             + +  +              
Sbjct: 793  AAPKDAVRLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVS 852

Query: 616  --PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671
                      +           +  L+ ++  E  RLLYV MTRA  +L +    +    
Sbjct: 853  VEESYAPNQLRISMDTLPYQQNLVELQLASLSEQMRLLYVAMTRAETKLYLIGKGSQEVL 912

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                               + SN + W   +   F ++    + +               
Sbjct: 913  DKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRI 972

Query: 715  ST----HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-------- 762
            +        +     + + I + +D  +   +L S  ++ I  P +  PS I        
Sbjct: 973  NEPVLFPADDLADNRQSDDILRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIM 1032

Query: 763  ----------------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                +       +       G  +H+L+Q I            +
Sbjct: 1033 DTDGLDIMDERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSRPSMAVLRS 1092

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDI 862
            +     A      + +  L  I    E  +    +  S     E   +   + +   ++ 
Sbjct: 1093 ALAQVQADEAVKNQIQ--LPKIASFFETDLGRLLIENSDRVRREAPFAMLKRDDDSGQEF 1150

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            ++ G +D   + +  I +F+YKT  +       +   +  QL +Y + L  SY    +  
Sbjct: 1151 VLRGILDGYLLFEDRIILFDYKTDKYKDSS--ELIARYHGQLDLYAQALSHSYGISQIEK 1208

Query: 923  LLIYVSEPKVFII 935
             LI +   ++ ++
Sbjct: 1209 YLILLGGEQLQVL 1221


>gi|225019255|ref|ZP_03708447.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum DSM
            5476]
 gi|224947886|gb|EEG29095.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum DSM
            5476]
          Length = 1188

 Score =  331 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 147/958 (15%), Positives = 305/958 (31%), Gaps = 109/958 (11%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
            +   +   L+K   L +       +E   +L +F   +K   +     + ++++  +  +
Sbjct: 260  LRPYHEAALEKLAALIEELDGCGWDEARGVLKAFKFPRKPVKKPEGFDKTLSEEEDE--K 317

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKS----------TLASLTLAKYLNAHYEEAKKKNCVLD 148
             LK +++    I     T    +                 + +  +   + +K++  +LD
Sbjct: 318  FLKPARNAVNGILKELLTCSEEEFWEDIRLQQPVLRKLCEVVERYSERMDASKREKNILD 377

Query: 149  FEDLIINTNDLLKKRDVSAWIR----YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            F DL I    LL +R     +R      +  EI+ IL+DE QD + +Q  +  ++++D  
Sbjct: 378  FPDLGIFAIRLLLERREGKLLRTPVGEAVSSEIDEILVDEFQDVNQMQDMLFEAVSKDET 437

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                       LF VGD KQSIY F  A P+  L+++      +T +      + L  +F
Sbjct: 438  ----------NLFLVGDIKQSIYRFRQASPEIFLQKRARYADFSTGSYPA--RLTLAENF 485

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS  ++   V+ +F    + Q    D     + R++                        
Sbjct: 486  RSRPEVTGCVNYLFRQLMSEQLGELDYGEGEQLRAAASYPP-------------HPDAQA 532

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--SNGKKRVIQAKDILVLVRK 382
            +     +  D   +   A I A  I   I +M+         +GK R     D  +L+R 
Sbjct: 533  ELHLIDTAADDSDEGRVA-IEANYIGRKILSMLRNGYPVTGEDGKLRPCTLSDFAILLRS 591

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
            +KD      +         + V   +         +  ++ L R I +   D+  + +L 
Sbjct: 592  KKDKA---EVYAEQLMHLGLDVWTENTSGYFRSREVSLMLNLLRVIDNPLQDIPLLSVLL 648

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            SPL+ F+ D++ ++                 +       +  ++ +  L   A   S   
Sbjct: 649  SPLYGFTPDELAELRILDRRAPLYLCVTASDSGHC----REFVQSLSRLREAAAVTSVEK 704

Query: 503  FFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-- 559
                I         F       + +  L   L++    E+ S   L   +  ++      
Sbjct: 705  LIQKIYDETLFYALFGAMESSEQKLANLRLLLSYAAGYERGSGRGLSGFLRYIDTAEEAN 764

Query: 560  ---TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                     + N + VRIMT+H +KGLE P+ F+ +   +           +  +     
Sbjct: 765  RDFECANIFTENSSAVRIMTMHKSKGLEFPICFVANCAGRFNQRDLSSVYCLSNTHGFAM 824

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--- 673
             + +     +             K++   E  R+LYV MTRA ++LI+   ++   +   
Sbjct: 825  KLTVPELLKQYPTLPYLAAQLENKRALLSEEMRVLYVAMTRAREKLILTIAADNPQQLVQ 884

Query: 674  -----------------------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
                                               +  D+   +       +        
Sbjct: 885  KAAVQIVEGERLPFYPLYSAHSYADWLLMGLLRHPSAGDLRSQADSGLSPYEPQSGDARC 944

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP----- 759
                 +  +              E  ++ +   +               P  L+      
Sbjct: 945  PLKVVLDGQEYGEQELEQAQPAPEADEETLAALRQNLGYRYAHAALSEIPAKLSVTQIAE 1004

Query: 760  -STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
             S   +  +              RG   H+ +Q               S   +N  + P 
Sbjct: 1005 HSRPASLTRRPQFERERGLTPAERGTATHQFIQFADFARAADDLEAEISRLRENGFIDPQ 1064

Query: 819  KEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINC---------PKKDIIISGRI 868
            +        +  L  +P+     +    Y E+     ++            + I++ G  
Sbjct: 1065 QAASVDRKGLESLFHSPLAQRIRAARRVYRELDFFYDLDASEIFPEQETDGEKILVQGIA 1124

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            D +    +++ I +YKT        E I   +  QL +Y++ ++     K +   ++Y
Sbjct: 1125 DCVLDEGESLVIIDYKTDR---ATREQIAGRYRGQLMLYKRAVEAML-GKPVSACILY 1178


>gi|324991607|gb|EGC23540.1| exonuclease RexA [Streptococcus sanguinis SK353]
          Length = 1224

 Score =  331 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 154/1013 (15%), Positives = 320/1013 (31%), Gaps = 131/1013 (12%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
             +          +  +              TIL     L    +T  + ++   LS    
Sbjct: 248  ELETFFSAHLEHEGREFAGAKYQENVQDALTILAGLNELSSIEETTQVLKQIVALSQLSN 307

Query: 75   TQKFTPQ--------KNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLA 125
             Q FT +        K    ++ N+    + E+L+    +  ++     +  +       
Sbjct: 308  GQAFTARVGKNADELKKETAKDYNEARKPMIERLRSFDQQLYQLDFIEQHQDECLPLVEL 367

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                       Y E KK     +F D+     ++L++      +R    +  + +++DE 
Sbjct: 368  LRDFVADFAQAYLERKKAENAFEFGDISHFAIEILERFPE---VRRFYQERYHEVMVDEY 424

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT+  Q  ++  L           S  +  F VGD KQSIY F  A+P+    + +  Q
Sbjct: 425  QDTNHTQERMLDLL-----------SRGQNRFMVGDIKQSIYRFRQADPQIFSDKFKAYQ 473

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
            +       +  +I L  +FRS  ++L   + VF    + +    D   T    +    + 
Sbjct: 474  ED----SSQGKLIVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKR 529

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                        + +     + S  S  +   +    ++ A  +   I  +I        
Sbjct: 530  DP-------NPANRASFLIYEGSKESPEEEADEGLPQAVSAGEVELVIKEIIR------L 576

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMAL 424
              +  +  KDI +L   R        L       ++I +V +D        + +  ++  
Sbjct: 577  HNEEGVAFKDITLLTASRT----RNDLILAAFEQHQIPLVPDDGAANYLQSVEVLVMLDT 632

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF----------- 473
             R I +  +D +   +LKS +F+F ED++ ++  Q  +  +     +K            
Sbjct: 633  LRTINNPLNDYALTALLKSHMFDFGEDELARLSLQASQEHSQENLYEKLVNALEGRGLHP 692

Query: 474  ---ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529
                     K QH  + +      ++  S +D    I   +           G +    L
Sbjct: 693  ALVNQELQKKLQHFHETLQSWRTYSKTHSLYDLIWKIYQDRFYYDMVGTLVNGAQRQANL 752

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLES 585
                      E++S+  L   I  +++             +A    VR+MT+H +KGLE 
Sbjct: 753  YALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPVAAPKEAVRLMTIHKSKGLEF 812

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSKSRNNIVS 633
              VFL++             + +  +                        +         
Sbjct: 813  KYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVEDPYAPNQLRISMDTLPYQ 872

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-------------------NEK 674
              +  L+ ++  E  RLLYV MTRA  +L +    +                       +
Sbjct: 873  QNLAELQLASLSEQMRLLYVAMTRAETKLYLVGKGSQEALDKRQWGKSQQGRLSAGLRSQ 932

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLEREETI 730
             +N + W   +   F ++    + +               +        +     + + I
Sbjct: 933  LNNFQDWLYAIQAVFSDENLAYETRFVTDEELTAEEIGRINEPVLFPADDLANNRQSDDI 992

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------------------------DTKG 766
            ++ +D  +   +L S  ++ I  P +  PS I                            
Sbjct: 993  RRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTDGLDIMDERAAFRPQPSF 1052

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                    +       G  +H+L+Q I      +    +        +   A + +  L 
Sbjct: 1053 DLPDFGKKAKVTGAQVGSAVHELMQRIPLDS--RPSMAVLRSALAQVQADEAVKKQIQLP 1110

Query: 827  SITRLLENPMMTTAM--SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFE 882
             I    E  +    +  S     E   +   +     ++ ++ G +D   + +  I +F+
Sbjct: 1111 KIASFFETDLGRLLIENSDRVRREAPFAMLKQDEDSGQEFVLRGILDGYLLFEDRIILFD 1170

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            YKT  +       +   +  QL +Y + L  SY    +   LI +   ++ ++
Sbjct: 1171 YKTDKYKDSS--ELIARYHGQLDLYAQALSRSYSISQIEKYLILLGGEQLQVV 1221


>gi|262282991|ref|ZP_06060758.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA]
 gi|262261243|gb|EEY79942.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA]
          Length = 1227

 Score =  331 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 155/995 (15%), Positives = 322/995 (32%), Gaps = 139/995 (13%)

Query: 36   SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95
              +       +L     L    +    ++ F +L    L  + +  + +      ++  +
Sbjct: 274  EFAGAKYQENVLLALDKLGSLQELSSEQDYFRVLKDVVLLSRASGGRALTITTRKEELKE 333

Query: 96   LKEKLKKSQ-DEFIKIRDRFNTYKMFKSTL-----------ASLTLAKYLNAHYEEAKKK 143
            L +   + + +    +R   ++   F+                          Y E KK 
Sbjct: 334  LADTFNQGRKERIEHLRGLESSLYQFEFLEKYQDDSLPLLDLLRDFMSDFTRTYLERKKT 393

Query: 144  NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
                +F D+      +L+       +R    +  + +++DE QDT+  Q  ++  L    
Sbjct: 394  ENAFEFGDISHFAIQILEDFP---QVRSFYQERYHEVMVDEYQDTNHTQERMLELL---- 446

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                   S+    F VGD KQSIY F  A+P+    + R+ Q        +  +I L  +
Sbjct: 447  -------SNGHNRFMVGDIKQSIYRFRQADPQIFNDKFRLYQAD----PSQGKLIVLKEN 495

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            FRS  ++L   + VF    + Q    +   T    +    +               ++  
Sbjct: 496  FRSHVEVLEATNDVFKRLMDEQVGEINYDETHYLVAGNPTKA---------SPNPKNRAE 546

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                  T   + L +ES ++     +   I  +   +          +  KDI +L   R
Sbjct: 547  FLLYDSTVASEELSEESISAGEVSLVIKEIIRLHEEEE---------VAFKDITLLTASR 597

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                    +     + + I +V +         + +  ++   R I +  +D +   +LK
Sbjct: 598  T----RNDIILAEFDKHNIPLVPDGGEDNYLQSVEVMVMLDTLRTINNPLNDYALTALLK 653

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFAN--------------CGISKFQHVIKYI 488
            S +F+F ED++ +I  Q  + ++     +K  N                  K     K +
Sbjct: 654  SAMFDFGEDELARIALQNSQEKSQENLYEKIENALTNQGLHSDLILPDLKKKLVLFQKTL 713

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
                  A+  S +D    I   +       +   G +    L          E++S+  L
Sbjct: 714  LSWRIFAKTHSLYDLIWKIYQDRFYYDYVGALPNGTQRQANLYALSLRANDYEKSSFKGL 773

Query: 548  QELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               IS +++            ++A  + V +MTVH +KGLE   VFL++           
Sbjct: 774  SRFISMIDKILENQHDLASVPYAAPQDAVHLMTVHKSKGLEFKYVFLLNMDKAFNRQDTS 833

Query: 604  KKMHIMPSLNDD------------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
              + +                     +     +           ++ +K ++  E  RLL
Sbjct: 834  SSIILSRKNGIGIKYIADVEVKYPEEVKPRSIRLSMDTLPYQQNLEEIKLASLSEQMRLL 893

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQR-------------------TWYDMVYDSFHND 692
            YV MTRA  +L +    +    +K +                      W   +   F  D
Sbjct: 894  YVAMTRAETKLYLVGKGSQEKLEKRSWGQAEQGLLSASIRSQLTSFQDWIYAIQAVFSED 953

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                 ++  +  +       +    +P    + T   + E I + +D  +   +L    +
Sbjct: 954  HLAFDLRFVSDEDLTADKIGQIHHSNPFDADDLTDNRQSEDIGRALDILESVDRLNCQYR 1013

Query: 749  NDINEPYILNPSTIDTKGKT------------------------NLESLLSDNQTFNRGL 784
            + I  P +  PS I    +                               +       G 
Sbjct: 1014 SAIELPSVRTPSQIKKFYEPIMDTEGLDIMDERVAFRPQPNFDLPDFGRKAKVTGAQVGS 1073

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-- 842
             +H+L+Q I    +       +S     A+    K+    L  I    E+ +    ++  
Sbjct: 1074 AVHELMQRIPLDQKPDMAVLKSSLRQVQAEESVKKQID--LNKIASFFESQLGEILLANS 1131

Query: 843  CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
               + E   +   +     ++ ++ G +D   + +  I +F+YKT  +       +   +
Sbjct: 1132 DKLHREAPFAMLKRDETSGQEFVLRGILDGYLLFEDRIILFDYKTDKYKEAS--ELIARY 1189

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             +QL +Y + L  SY    +   LI +   K+ ++
Sbjct: 1190 HSQLDLYAQALSRSYGISRIEKYLILLGGEKLQVV 1224


>gi|228956727|ref|ZP_04118513.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802915|gb|EEM49747.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 761

 Score =  331 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKKFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|228906067|ref|ZP_04069956.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200]
 gi|228853476|gb|EEM98244.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200]
          Length = 753

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 121/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITMADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + +              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDLQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|47569949|ref|ZP_00240614.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241]
 gi|228983546|ref|ZP_04143751.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|47553395|gb|EAL11781.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241]
 gi|228776142|gb|EEM24503.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 747

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|229028144|ref|ZP_04184286.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271]
 gi|228733162|gb|EEL84002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271]
          Length = 751

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|324324304|gb|ADY19564.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 749

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|52144943|ref|YP_081887.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|229154058|ref|ZP_04282183.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342]
 gi|51978412|gb|AAU19962.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|228629338|gb|EEK86040.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342]
          Length = 751

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|222094063|ref|YP_002528120.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|229137129|ref|ZP_04265748.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26]
 gi|221238118|gb|ACM10828.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|228646301|gb|EEL02516.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26]
          Length = 747

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNEVGNKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|229171137|ref|ZP_04298731.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3]
 gi|228612315|gb|EEK69543.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3]
          Length = 753

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIEKNSNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKITKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|229089419|ref|ZP_04220690.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42]
 gi|228693896|gb|EEL47588.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42]
          Length = 751

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|196045338|ref|ZP_03112570.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108]
 gi|196023922|gb|EDX62597.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108]
          Length = 753

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|229083589|ref|ZP_04215918.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44]
 gi|228699721|gb|EEL52377.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44]
          Length = 745

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 124/726 (17%), Positives = 230/726 (31%), Gaps = 133/726 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  D +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKERNIDPKKFDPRSILGGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L  +    
Sbjct: 155 KNELLSADKYAKQISIADPFEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFDR---I 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ ++  L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNRAQYILVNKLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+  IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQSILNAANAVIENNSNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNQIGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDEIQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGIKFYDRKEIKDILAYLRLIANPDDEISFARIINMPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +   + +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTTVLDEIEHVGVSAKITKAVKEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RSLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF++     VF H                                   
Sbjct: 566 TMHSAKGLEFPVVFIIGLEEGVFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
              +++   +E  RL YVG+TRA ++L +      +   ++N       + +        
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTNMNAASRFISEIPTELLES 651

Query: 696 KKIKLT 701
                 
Sbjct: 652 LNETAP 657


>gi|223936289|ref|ZP_03628202.1| recombination helicase AddA [bacterium Ellin514]
 gi|223895151|gb|EEF61599.1| recombination helicase AddA [bacterium Ellin514]
          Length = 1211

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 153/1028 (14%), Positives = 330/1028 (32%), Gaps = 113/1028 (10%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            LK++  +  +         L        +     +  S ++ N    +  + L    +  
Sbjct: 191  LKSQLEMFASPEPAQWRTWLIEGITDWRNRWLPALQ-SEKSDNLKATECCRALASLLENP 249

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK- 118
             +E+    L + +      P+      ++  +   +    L+    +  ++      +  
Sbjct: 250  SLEQGAEALENIWAADLEWPRGKKTDWRKPLEDFLEEATFLRSLARKTKEVDPLAEDWDW 309

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL--KKRDVSAWIRYKIDQE 176
            +     + L LA+  +A +  AK++  V+DF DL  ++  LL  +    +  +  +  ++
Sbjct: 310  IRGQMTSLLGLAEQFSAAFSLAKRELGVVDFHDLEQHSLQLLWDRNTKQATAVARQWRKK 369

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            +  + +DE QD +  Q  ++++L+ +              F VGD KQSIY F  A+P  
Sbjct: 370  LRFVFVDEYQDINDAQDAILKALSRE--------GEESNRFLVGDVKQSIYRFRLADPHI 421

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                    +      G     I L  +FRS   IL  ++ +F         S       R
Sbjct: 422  FQNYIETWR------GADGKAIPLVDNFRSREAILNFINSLFEGLMRRDIGSVPYDDEAR 475

Query: 297  HR----------SSRIGQVGTVQLWEQVVSQHDSQCNPQQES-WTSYFDSLPQESSASIL 345
             R          S        V+L  ++    +++  P+ E   +  +  +     A   
Sbjct: 476  LRFGNAENRVDLSCAKEDAPRVELHLRLKGSLEAKDMPEGEGEGSRAWTEMMNLEEAEKE 535

Query: 346  ARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            AR I   +  +     +  +      R +   D+ VL+R                +   I
Sbjct: 536  ARLIGKRLLALKAEKHLAWDEHTKAMRPVTWSDMAVLLRS---PARKAESYAKEFSRLGI 592

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
             ++   R    + + + DL++L + + +   D+  + +L SPL   S D++  I  +  +
Sbjct: 593  PLLVA-RGGFYESMEVTDLLSLLQLLDNPLQDVPTLAVLHSPLVGMSLDELATIRLKLTK 651

Query: 463  TETVYE----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      +     + G  K    +K       +A+  S       +L         +
Sbjct: 652  GPIWMALRRFHESDEEHAGWKKADRFLKNFASWRRLARQVSLSRCLEAVLSETHYAAWLL 711

Query: 519  SRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY---PPTIKRAHSANHNEVRI 574
            ++  G +    +   L    + ++     L   +  ++         + A  A  + V +
Sbjct: 712  TQHRGEQRHANVQRLLGLAQQFDRFQRQGLFRFLRFIDAQQAAETEPEVAAVAEEDAVSL 771

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            M+VH +KGLE PVV + D G          ++ +       P +       +  +     
Sbjct: 772  MSVHQSKGLEFPVVVVADLGKPFNMMDLRAEIMLDDKFGLCPQVKPPHTGQRYPSLPYWL 831

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------SNEKKSNQRTW 681
              +  K+    E  RLLYV +TRA D LI+    +              +       R +
Sbjct: 832  ARQRQKQEMLGEEMRLLYVALTRARDTLILTGSISEPVFNKRWLETSELTAATLLAARNF 891

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             D +             +     +   W  YE  TH  E +P    E  K       +  
Sbjct: 892  LDWLAGWCTKITGTVLKENQGRNSLFCWKVYEDDTHLIETSPSAASEAEKMEQTSVPMDA 951

Query: 742  K----------LFSPIKNDINEPYILNPSTIDTKGKTNLESLL----------------- 774
                          P     +EP   + S +  +   ++E+                   
Sbjct: 952  ASWKKLQQKLSWIYPHSAATHEPAKTSVSALRRRMAEDIETEARPLFELKSANPQTKAQQ 1011

Query: 775  --------SDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                            G   H  LQ+  +  +   +              L   +     
Sbjct: 1012 RKNGNNNSERLSAAEVGTTHHSFLQMVSLERVGSVEELRREAKRLEAEQLLTVEEAGSLD 1071

Query: 825  LLSITRLLENPMMTTA--MSCDSYSEVSVSGKIN--------------CPKKDIIISGRI 868
              ++    ++ +       S     E++ + + +                ++ +++ G  
Sbjct: 1072 FPALAAFWKSELGLRIQRQSRHVRRELAFTVRFSPEEVAGNTPKDPELFDEEFVVVQGVA 1131

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYV 927
            D   +    I++ ++KT      E+      +  QL +Y + L   Y ++ +    L ++
Sbjct: 1132 DLTVLLPDQIWLVDFKTDRITSAELAEKVKIYEPQLQLYAQALARIY-HRPVTETQLYFL 1190

Query: 928  SEPKVFII 935
            +  +   +
Sbjct: 1191 ALKRSVAV 1198


>gi|206974372|ref|ZP_03235289.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97]
 gi|217957863|ref|YP_002336407.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187]
 gi|206747612|gb|EDZ59002.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97]
 gi|217067002|gb|ACJ81252.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187]
          Length = 751

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGNKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|268607993|ref|ZP_06141724.1| recombination helicase AddA [Ruminococcus flavefaciens FD-1]
          Length = 1213

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 145/933 (15%), Positives = 302/933 (32%), Gaps = 109/933 (11%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE--- 138
            K    + + +     +E +KK       I    +    +  +     +   +   Y+   
Sbjct: 289  KTAHDKPLREMYKKKRESVKKLV--LKAIDSIRSVESDYAESAEVSKMLADVMRKYQDIV 346

Query: 139  -EAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQ 192
               K +   + F+D      +LL   D       +    K  +  + I+IDE QD++  Q
Sbjct: 347  WAMKCEKNSISFDDGERLALELLADTDENGNIIQSEAALKTSEYYDIIMIDEYQDSNNKQ 406

Query: 193  WEVIRSLTEDFFVGK-NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
              + + L++++   +         +F VGD KQSIY F  A P+  +   +  +  +  +
Sbjct: 407  DLIFKLLSKNYRTDENGQPLYGDNVFLVGDVKQSIYRFRLANPRNFIGTLKSAEPYSVES 466

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                  I L  +FRS+ +++  V+ VFS   + +    D +   +         G     
Sbjct: 467  DAPIKSILLNRNFRSSENVIDFVNYVFSEVMSEKCGDIDYSDDEKLYFGAEYYRG----- 521

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT--IFSNGKKR 369
                   D +            D   ++ + +  A   A TI+ M+   T  + ++G  R
Sbjct: 522  -----ISDEKSRTVINFINDDADEEEEDGNINKEAVFTAQTIAEMLHKGTEVVGNDGSTR 576

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
              +  D  +LVR              L     +   G++         I  L+ L R + 
Sbjct: 577  PCRPSDFCILVRNNVHINKYAEQLSLL----GVPAKGSEESGYLRSREIAVLIDLLRVVS 632

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--------ETETVYEYIQKFANCGISKF 481
            +   D+    ++ SP++ FS  ++  I +                 EY + F      + 
Sbjct: 633  NPLLDIPMAAVMTSPMYMFSIRELAYIRSLEKGRPLYSVLRGLADGEYEECFDMFLRERC 692

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540
            +  +  +      +   +  +  + I           +   G +    L   + +    E
Sbjct: 693  RDFLDSLDSFRMDSVTMTIGELISSIYDTTDFISVMQLYSDGEKKRANLRALIQYAQSYE 752

Query: 541  QN----SYSSLQELISELEQYPPTIKRA----HSANHNEVRIMTVHTAKGLESPVVFLVD 592
            ++        L   +  L++       A     +++ + V ++T+H +KGLE P VF+ +
Sbjct: 753  ESAAFEGSGGLGGFLRHLDKVMENGDYAQGKVAASSGDYVSVLTLHRSKGLEFPFVFIAE 812

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T ++         +           +       K R    S L    ++ T+ E  RLLY
Sbjct: 813  TSTKF--QYDSDIVMCSSDGRAGYILYDPKIYRKYRTFQQSILASEEERDTRSEEMRLLY 870

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG+TRA  +L +         K+   +    ++ D   ++   +    ++ I        
Sbjct: 871  VGLTRAKQKLFVDLKCGEKAMKRVRSKLESCIINDGDISEIVAEADYFSDWIWAALMHHS 930

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP--IKNDINEPYILNPSTIDTKGKTNL 770
            ++S    +    E  E++  +  E+K+   +F+       I+       +T D    T L
Sbjct: 931  DFSAIAEKLGLTEAGESVPDVRCEEKLFDCVFAENISPVYIDRDEAAEKTTADEAVYTEL 990

Query: 771  ESLLSDN--------------------------------------------QTFNRGLII 786
            E L+SD+                                                RG  I
Sbjct: 991  EELVSDSYDRTLSETPAKLSVTEITKKLKQESDNFDYKLKRPRFITGSGKLTGSERGTAI 1050

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-- 844
            H   Q           +       K   +  A+         +    + +     +    
Sbjct: 1051 HTFFQYCDFDNAQADVSAEIEAVAKRGFITSAQADVISPEKASAFFASGLYKRIRAAGDK 1110

Query: 845  SYSEVSVSGKINCPK-----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
             + E      +                D +I G +D +      + I +YK+        
Sbjct: 1111 VWREKKFMVAVADLDIGSDALDQLKKSDGMIKGIMDLVFEEDDGLIIVDYKSDR--GASA 1168

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            + +   +  QL++Y+    +   +K +    +Y
Sbjct: 1169 KALSERYSMQLTLYKAA-AELTMHKKVKAAYLY 1200


>gi|322411491|gb|EFY02399.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
            dysgalactiae ATCC 27957]
          Length = 1210

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 156/1011 (15%), Positives = 307/1011 (30%), Gaps = 129/1011 (12%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
              +  +L+   +           +      +        K  + L    +       F  
Sbjct: 237  PKQEIQLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLVIIEKLYEWARDFPH 296

Query: 69   L--SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L                + T      +       K    + I+ R           ++  
Sbjct: 297  LYGRQGLSQLARDLTALLPTGNDVTVAGIKYPVFKSLHQKLIRFRHLETILTYQPESIPL 356

Query: 127  LTLAK----YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            L L K      +  Y +AKK+    +F D+      +L++      IR     + + +++
Sbjct: 357  LELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPD---IRQTYQDQYHEVMV 413

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+P+   ++ +
Sbjct: 414  DEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              Q           +I L  +FRS +++L   + VF+   +            +  +  I
Sbjct: 463  DYQTYPEQ----GKLILLKENFRSQSEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSI 518

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
            GQ       +    +H ++          + D    +  +      +A  I  +      
Sbjct: 519  GQ-------KIASPEHRAKLLLYNTDCEDHLDIEDADDISPSEVTIVAKEIIRLYNEQH- 570

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421
                    +  +DI +LV  R              N Y I  V    +      + +  +
Sbjct: 571  --------VPFEDITLLVSSRTR----NDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVM 618

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-- 479
            +   R I +  +D + V +L+SP+F F ED++ ++  Q+ + +       K     +   
Sbjct: 619  LDTLRTINNPRNDYALVALLRSPMFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTG 678

Query: 480  ------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVI 526
                        K    I+ +      A+  S +D    I   +       S+    +  
Sbjct: 679  THPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFNDRFYFDFVGSQVKAEQAQ 738

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              L        + EQ+ Y  L   I      LE          ++    V +MT+H +KG
Sbjct: 739  VNLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASPKQAVNLMTIHKSKG 798

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNI 631
            LE   VFL++   +           +                      +   +       
Sbjct: 799  LEFKYVFLLNCDKRFAMTDVHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLP 858

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----------------K 675
                 + L+ +T  E  RLLYV MTRA  Q+ +   ++    +                +
Sbjct: 859  YQLNKQELRLATLSEQMRLLYVAMTRAEKQIYLIGKASKEKSQEFTDGKRLGNHLPLALR 918

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST-------HHPENTPLEREE 728
                ++ D +                  I + E                  +     +  
Sbjct: 919  ERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQSQQVLQPDDLKDNRQSA 978

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768
             I + +D      +L    +  I+ P +  PS +    +                     
Sbjct: 979  DITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNEF 1038

Query: 769  --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                 S     +    GL +H+L+Q I             +     A+          L 
Sbjct: 1039 TLPEFSKQVKVEASQVGLALHRLMQAIPLTKPISLATIAQALEEIEAEAVVKAALD--LQ 1096

Query: 827  SITRLLENPMM---TTAMSCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIF 881
             + +      +   +   S + Y E   +   K    ++D +I G ID   + + +I + 
Sbjct: 1097 KVEQFFTETALGKRSQTYSTNLYREAPFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELI 1156

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            +YKT  +  +    +   +  QL +Y + L   Y        L+ +  P++
Sbjct: 1157 DYKTDRY--RHPSDLKTRYQQQLELYAEALSQIYGLPVTKKYLVLMGGPEL 1205


>gi|300856842|ref|YP_003781826.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436957|gb|ADK16724.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528]
          Length = 746

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 107/552 (19%), Positives = 192/552 (34%), Gaps = 115/552 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++  K N  LDF+DLI  T  L K+ +    I     ++  +I++DE QDT+ 
Sbjct: 170 ADVYLLYQKKLKDNNALDFDDLIYKTVQLFKENED---ILEFYQRKFKYIMVDEYQDTNR 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E +R L +          + + +  VGD+ Q IY++ GA+ K +L  ++        
Sbjct: 227 SQYEFVRLLAK----------AHKNICVVGDDDQCIYAWRGADIKNILDFEKDYPN---- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RS  +IL   + V S   N +                         
Sbjct: 273 ----AKVIKLEQNYRSKGNILKAANDVISNNSNRKEKML--------------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +S+   + + + +Y D            R IA  I  ++         +   
Sbjct: 308 ------RTESENGDKIKLYRAYSDIDEG--------RYIASKIKEIL--------KEDEG 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            Q KD  +L R    + +   +         I           D   IKD+MA  +FI +
Sbjct: 346 KQYKDFAILYRTNAQSRIFEDVF----MKSNIPYRIIGGLKFYDRKEIKDIMAYLKFINN 401

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483
             DD+S   ++  P  +  +  + KI        E++Y      + +       I+    
Sbjct: 402 PLDDVSLRRIINVPKRSIGDSTVQKIQDFANSMNESMYNVLLSIDEVLNLTKRNINCINK 461

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  I+  I      +       IL      ++       +    ++ L E ++     E
Sbjct: 462 FVSLINSFIRSRDKITVSSLIKEILDTTGYLEELKDSNEADSISRVENLQELVSAAAEFE 521

Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +   SL   + ++             + + V +MTVH+AKGLE PVVF+    + +F 
Sbjct: 522 TSSEDPSLSAFLEKVTLVSDVDNFD--QDADSVVLMTVHSAKGLEFPVVFMAGMENGIFP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                        EE  RL YVG+TRA 
Sbjct: 580 GTQSLNEF----------------------------------KEMEESRRLCYVGITRAK 605

Query: 660 DQLIICKHSNTS 671
           ++L +       
Sbjct: 606 EKLYMTSAETRR 617


>gi|196040164|ref|ZP_03107466.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99]
 gi|196029019|gb|EDX67624.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99]
          Length = 751

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|28211985|ref|NP_782929.1| DNA helicase [Clostridium tetani E88]
 gi|28204428|gb|AAO36866.1| DNA helicase [Clostridium tetani E88]
          Length = 639

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 111/608 (18%), Positives = 203/608 (33%), Gaps = 116/608 (19%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            +N+K  D +  + K   +   +       +          +A  +   Y++  K N  L
Sbjct: 27  SLNEKDFDDRSLINKIGQQKDNLISPEKFRREIGDNYRLGKIAN-VYELYQKKLKNNNAL 85

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI  T +L KK +    I      +  +I++DE QDT+  Q+E+++ L        
Sbjct: 86  DFDDLIYKTVELFKKNEE---ILEFYQDKFKYIMVDEYQDTNKSQYELVKLLAL------ 136

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                 + +  VGD+ Q IY++ GA+ + +L  ++   +           I+L  ++RS 
Sbjct: 137 ----KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPQ--------VKTIKLEENYRSM 184

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           ++IL+  + V     N +                               +  +    + +
Sbjct: 185 SNILSAANDVIKNNSNRKVKKL---------------------------RTSNSQGEKVK 217

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
            + +  D           A+ +   I  +I  +             KD  +L R    + 
Sbjct: 218 VYRANSDIEE--------AQFVINEIKKLIKEENR---------TPKDFSILYRTNAQSR 260

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           +   +        KI           D   IKD+MA  + I +  DD+S   ++  P   
Sbjct: 261 IFEEVF----MRNKIPYKIVGGLKFYDRKEIKDIMAYLKLINNPLDDVSLKRIINVPKRG 316

Query: 448 FSEDDIFKI-CTQRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPH 501
             +  I KI    R   E +Y  +        AN   S     +  I+  I         
Sbjct: 317 IGKSSIEKIENFSREMEECIYSTLLDIDSIGIANRAASSVNKFVSLINSFIRKKDEVKVS 376

Query: 502 DFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQY 557
                I+      ++       E    I+ L E ++  +  E  +   +L   + ++   
Sbjct: 377 VLIQEIIEYTGYMKELQDSKNIEDLSRIENLKELVSAAVDFEISSEDKTLSAFLEQIALV 436

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                       + V +MTVH+AKGLE P VF+V   + +F                   
Sbjct: 437 SDIDNYD--EQSDAVVLMTVHSAKGLEFPAVFMVGMENGIFPGTQSLDDI---------- 484

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                                      EE  RL YVG+TRA ++L +          ++ 
Sbjct: 485 ------------------------DEMEESRRLCYVGITRAKEKLYMTSAERRMVFGRTV 520

Query: 678 QRTWYDMV 685
                D +
Sbjct: 521 FYPESDFI 528


>gi|195977957|ref|YP_002123201.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp.
            zooepidemicus MGCS10565]
 gi|251764553|sp|B4U2H1|ADDA_STREM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|195974662|gb|ACG62188.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp.
            zooepidemicus MGCS10565]
          Length = 1214

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 151/1015 (14%), Positives = 323/1015 (31%), Gaps = 129/1015 (12%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             ++  + +   +           +               K  + L+           F  
Sbjct: 237  PDQVVDALLACMQDTADQLRDLTDMEGYAQTTKAGKLTAKYTKHLKMIDNLYEWASHFDS 296

Query: 69   L--SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L                + +      +       K  Q++ +  R         + +L  
Sbjct: 297  LYGKERLGQLAQELTALLPSGADITVAGHKYPIFKSLQEQLVGFRHLETILAYQQESLPL 356

Query: 127  LTLAKYLN----AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            L + +         Y  AK +    +F D+     ++L++   +  IR       + +++
Sbjct: 357  LEVLQAFVISFSEAYLAAKMQENAFEFSDIAHFAIEILQQ---APDIRQAYQGHYHEVMV 413

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+P+   ++ +
Sbjct: 414  DEYQDNNHMQERLLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              Q    +      +I L  +FRS +++L V + VFS   +            +  +   
Sbjct: 463  DYQSNPEH----GKLILLKENFRSQSEVLNVTNAVFSRLMDESLGEITYDDKHQLVAGSE 518

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
             Q          +  +++    +     S  D +            +A  I  +   +  
Sbjct: 519  AQKQLHPENRAQLLLYNTDQAQEGTEEASTNDGISAG-----EVTLVAKEIIRLYNEE-- 571

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421
                    +  +DI +LV  R     I  +     N Y I  V    +      + +  +
Sbjct: 572  -------KVAFEDITLLVSSRTRNDTIFQVF----NQYGIPLVADGGQENYLKSVEVMVM 620

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA------- 474
            +   R I +  +D + V +++SP+F+F ED + +I  Q    +    +  K +       
Sbjct: 621  LDTLRSINNPLNDYALVALMRSPMFSFDEDQLARISLQSSSQDQPQAFYDKLSNSLRGQG 680

Query: 475  -------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVI 526
                      ++K     + + +    A+  S ++    I   +       S+    +  
Sbjct: 681  EHPGLIGQELMTKLVDFDRTLRDWRQFAKLHSLYELIWKIFNDRFYFDFVASQPKAEQAQ 740

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              L        + EQ+ Y  L   I      LE              + V +MT+H +KG
Sbjct: 741  ANLYALAIRADQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVERPKHAVNLMTIHKSKG 800

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-----------IWIPQSKSRNNI 631
            LE   VF+++   +         + +                      +   +       
Sbjct: 801  LEFHYVFILNFDKRFAMADLQAPIILNRDEGIGIKYVANVKELLRDEKLASLKVTMETLP 860

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT-------------------SN 672
                 + L+ +T  E  RLLYV MTRA  ++ +   ++                    S 
Sbjct: 861  YQLNKQQLRLATLSEQMRLLYVAMTRAEKKVYLVGKASKEKIQAKTADNSSEGRLALASR 920

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----HHPENTPLEREE 728
            E+  + + W   +  +F  ++    ++  +  +       +  +       +     + E
Sbjct: 921  ERLLSFQDWLLAITATFSKEDLFIDVRFVDDSDLTAEAVGQLRSSGLLQADDLKDNRQTE 980

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768
             I + +D      KL +  +  I  P +  PS + T  +                     
Sbjct: 981  DIARALDMLDKVSKLNASYQAAIELPTVRTPSQLKTLYEPLMDTDGVDIIDQPYHRPKSF 1040

Query: 769  --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-L 825
                 S     +    G  +H+L+Q I    +    +   +          A+    L +
Sbjct: 1041 ELPDFSKKKAVEPSQVGSSLHELMQRIPMSDQITAGDIEQAL---QLVSADAEVKARLDI 1097

Query: 826  LSITRLLENPMMTTAMSCDS---YSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFI 880
              +T       +   +       Y E   +   K +  ++  ++ G ID   + +  I +
Sbjct: 1098 KKVTAFFATTELGKLLQEHHQRLYREAPFAILKKDSLSQEQYVVRGIIDGYLLFEDRIVL 1157

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            F+YKT  +  Q+   +   +  Q+ +Y + L  SY    +   L+ +   ++ ++
Sbjct: 1158 FDYKTDRY--QQSAELKQRYQQQMDLYAEALSQSYGIARVEKYLVLMGGSQLEVV 1210


>gi|229182687|ref|ZP_04309928.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1]
 gi|228600772|gb|EEK58351.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1]
          Length = 749

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|228931796|ref|ZP_04094692.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827776|gb|EEM73514.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 747

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|229119951|ref|ZP_04249206.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201]
 gi|228663417|gb|EEL19002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201]
          Length = 751

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|300118924|ref|ZP_07056635.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1]
 gi|298723540|gb|EFI64271.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1]
          Length = 747

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|196034734|ref|ZP_03102142.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W]
 gi|218901494|ref|YP_002449328.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820]
 gi|228925549|ref|ZP_04088638.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944101|ref|ZP_04106480.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|195992777|gb|EDX56737.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W]
 gi|218539393|gb|ACK91791.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820]
 gi|228815490|gb|EEM61732.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228834027|gb|EEM79575.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 751

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|49479079|ref|YP_034625.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|225862343|ref|YP_002747721.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102]
 gi|49330635|gb|AAT61281.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|225788890|gb|ACO29107.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102]
          Length = 753

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|152974126|ref|YP_001373643.1| ATP-dependent DNA helicase PcrA [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152022878|gb|ABS20648.1| ATP-dependent DNA helicase PcrA [Bacillus cytotoxicus NVH 391-98]
          Length = 741

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 125/751 (16%), Positives = 239/751 (31%), Gaps = 133/751 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNILAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  D +  L +  + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKERNIDPKKFDPRSILARISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L+  +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSAEKYAKQISIADPFEKLSSDVYTEYQKRLLKNNSLDFDDLIMTTIHLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ ++  L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNRAQYMLVNKLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RST +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AKVILLEQNYRSTKNILNAANAVIENNINRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TENQIGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + +              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDEVQMGNR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGIKFYDRKEIKDILAYLRLIANPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +   + +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTTVLDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E    ++ LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLESEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF++     VF H                                   
Sbjct: 562 TMHSAKGLEFPVVFIIGLEEGVFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
              +++   +E  RL YVG+TRA ++L +      +   ++N       + +        
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLSNAQMRTLFGRTNMNAASRFISEIPTELIEP 647

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                              +T    +  +  
Sbjct: 648 LNETKPKRETFGAKAKVAATTTRSRSQIVRP 678


>gi|254686688|ref|ZP_05150546.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724764|ref|ZP_05186547.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A1055]
          Length = 747

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|158319600|ref|YP_001512107.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs]
 gi|158139799|gb|ABW18111.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs]
          Length = 739

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 104/572 (18%), Positives = 187/572 (32%), Gaps = 118/572 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++  K N  LDF+DLI+ T  L +       +      +  +IL+DE QDT++
Sbjct: 185 AEIYRLYQDRMKSNNALDFDDLIMKTVQLFQTHPT---VLRYYQNKFKYILVDEFQDTNM 241

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+ +I  L +          S   L  VGD+ QSIY + GA+ + +L  ++        
Sbjct: 242 AQYTLISLLAK----------SHGNLCVVGDDDQSIYGWRGADIRNILGFEKDFPN---- 287

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RST  IL   + V +   + +                        L
Sbjct: 288 ----TQVVKLEQNYRSTKSILDAANMVVANNTDRKSKK---------------------L 322

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +   +    +   +       A  I+ TI  +   +          
Sbjct: 323 W-------TDNQDGEIIQYYRANNEYDE-------ASFISGTIEKLNEEENRP------- 361

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    +  +  +         I           D   IKD++A  R I +
Sbjct: 362 --YSEFAILYRTNAQSRALEEML----MKRAIPYKIYSGTRFYDRKEIKDILAYLRTIEN 415

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQ------H 483
             DD+S   ++  P        I +       + E+ +  +           +       
Sbjct: 416 PVDDVSVKRIINVPKRGIGIKSIDRFDEYAEGKNESFFGALLHVDQMPDQSTRVKVQTNK 475

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN- 539
             + I  L       S  D    I          ++    E     + L EFL+ T    
Sbjct: 476 FTELIQSLRDRQDEMSVTDIVKEIYEKTGYIDALMAEDKIEAESRIENLQEFLSVTKDFD 535

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L+E    L +         +   N V +MT+H+AKGLE PVVF+      +F 
Sbjct: 536 ENSEVKTLEEF---LARTSLETTLDENDEENTVTLMTLHSAKGLEFPVVFIPGMEESIFP 592

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                   +++  EE  RL YVG+TRA 
Sbjct: 593 SAMSL-----------------------------------QENNLEEERRLCYVGITRAR 617

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           ++L +      +   ++N       + +    
Sbjct: 618 EKLYMSHAMTRTLYGRTNANPISRFLGEIPEE 649


>gi|301052017|ref|YP_003790228.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|300374186|gb|ADK03090.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 747

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|228913033|ref|ZP_04076672.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846438|gb|EEM91451.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 747

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 225/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +              +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEYVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|167634189|ref|ZP_02392511.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442]
 gi|170688392|ref|ZP_02879601.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465]
 gi|254742291|ref|ZP_05199977.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Kruger B]
 gi|167530503|gb|EDR93218.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442]
 gi|170667724|gb|EDT18478.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465]
          Length = 751

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|229194679|ref|ZP_04321472.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293]
 gi|228588782|gb|EEK46807.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293]
          Length = 753

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|118476054|ref|YP_893205.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415279|gb|ABK83698.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al
           Hakam]
          Length = 753

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 225/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +              +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEYVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|30260477|ref|NP_842854.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames]
 gi|47525567|ref|YP_016916.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|254739087|ref|ZP_05196789.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254761884|ref|ZP_05213733.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Australia
           94]
 gi|30253845|gb|AAP24340.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames]
 gi|47500715|gb|AAT29391.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 747

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 31  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 90

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 91  FHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 150

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 151 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 258 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 310 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 335 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 442 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 502 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 561

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 562 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 591 ---MEEDEMQEERRLAYVGITRAEEELYLS 617


>gi|49183319|ref|YP_026571.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne]
 gi|65317729|ref|ZP_00390688.1| COG0210: Superfamily I DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|165871400|ref|ZP_02216048.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488]
 gi|167640142|ref|ZP_02398409.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193]
 gi|170708734|ref|ZP_02899171.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389]
 gi|177653645|ref|ZP_02935784.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174]
 gi|190567423|ref|ZP_03020337.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis Tsiankovskii-I]
 gi|227812969|ref|YP_002812978.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684]
 gi|229599888|ref|YP_002864922.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248]
 gi|254756067|ref|ZP_05208096.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Vollum]
 gi|49177246|gb|AAT52622.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne]
 gi|164712884|gb|EDR18413.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488]
 gi|167511953|gb|EDR87332.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193]
 gi|170126313|gb|EDS95203.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389]
 gi|172081225|gb|EDT66300.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174]
 gi|190561550|gb|EDV15521.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis Tsiankovskii-I]
 gi|227005824|gb|ACP15567.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684]
 gi|229264296|gb|ACQ45933.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248]
          Length = 751

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 226/690 (32%), Gaps = 133/690 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++  TL            
Sbjct: 35  GAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDTLVGPEAEDIWIST 94

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +K +  + I+ K  + +  L    + 
Sbjct: 95  FHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKERNIDPKKFEPRSILAGISNA 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K          L   +   Y++   KN  LDF+DLI+ T  L ++    
Sbjct: 155 KNELLSADKYAKKITIADPYEKLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSI
Sbjct: 212 PEVLEFYQRKFQYIHVDEYQDTNKAQYLLVKHLAARF----------KNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  +           +I L  ++RS+ +IL   + V     N + 
Sbjct: 262 YRWRGADISNILSFEKDYEN--------AQVILLEQNYRSSQNILNAANAVIERNTNRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW              + S+        +       A
Sbjct: 314 KK---------------------LW-------TDNEVGSKISYYRAATEKDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I + I              +  D  VL R    + ++  +         I    
Sbjct: 339 YFVAKKIRDDIQMGKR---------KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETET 465
                  D   IKD++A  R I + +D++SF  ++  P        I K I        +
Sbjct: 386 VGGTKFYDRKEIKDILAYLRLIGNPDDEISFARIINVPKRGIGATSIDKIINYGVQNGIS 445

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +     +  +           +     +H  +++ ++ S  +    ++     R    + 
Sbjct: 446 LTAVFDEIEHVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
              E     + LDEFL+ T   E Q+   SL   +++L       +         EV +M
Sbjct: 506 RTLEAEGRLENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F H                                   
Sbjct: 566 TMHSAKGLEFPVVFIVGLEEGIFPHTRSL------------------------------- 594

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +++   +E  RL YVG+TRA ++L + 
Sbjct: 595 ---MEEDEMQEERRLAYVGITRAEEELYLS 621


>gi|227486420|ref|ZP_03916736.1| ATP-dependent exoDNAse beta subunit [Anaerococcus lactolyticus ATCC
            51172]
 gi|227235601|gb|EEI85616.1| ATP-dependent exoDNAse beta subunit [Anaerococcus lactolyticus ATCC
            51172]
          Length = 1121

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 152/945 (16%), Positives = 312/945 (33%), Gaps = 138/945 (14%)

Query: 49   KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
             A+  +  +  +   + +   S     +K+      I  EI     DL  ++  ++D + 
Sbjct: 238  LAEDYEMLAGIRDQIDDWDNFSKALANKKYATFAKKIKTEIGDD--DLVNEINSARDAYK 295

Query: 109  KIRDRFNTYKMFKSTLAS--------------LTLAKYLNAHYEEAKKKNCVLDFEDLII 154
                      +     A                 L K     +++ K     LDF DL  
Sbjct: 296  AEIKELEGLIVNTDAKALDFIRTKEDVLFRELYKLTKDFKETFDKKKSAKDYLDFNDLEH 355

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
                LL         R K+  +  +I  DE QD++ IQ  ++  L  D           R
Sbjct: 356  EFISLLDN----QTAREKLRAKYKYIFFDEYQDSNEIQNYIVDKLKSD-----------R 400

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             LF VGD KQSIY F  A P   + +    +K   +       I L  +FR+   IL   
Sbjct: 401  NLFFVGDVKQSIYGFRRARPDLFIEKLDSYEKEKESM-----RINLNENFRTDRLILDFN 455

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + +F      + +++       HR +                        +++   S   
Sbjct: 456  NYIFDRLMT-KEMADIDYKKGGHRLNY--------------------GKEEKDLLDSARV 494

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
             +   + +      +A  I +++              + +DI +L+R   ++       +
Sbjct: 495  GVKVLAKSVREETYLASLIKDLLAEG----------YEYRDIAILLRNGTESYKYEEAFK 544

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                   I    +   + T    +   + L +++ +  DD+  + +L+S +F+  EDD+ 
Sbjct: 545  ----KADIPYFNDISKVSTQASEVGFFINLLKYLTNPNDDIILLSVLRSVIFDIDEDDLA 600

Query: 455  KICTQRHETETVYEYI-QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
            +I       +    +      +    K +     I +L       + +DF   +      
Sbjct: 601  RIKLAFASYKFYEAFDAYNKEDELYEKIKKFKALIEDLKDKLAILNLYDFANYLFEKSGL 660

Query: 514  RQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHS 566
                ++R    + I+ +D  ++     +  + + L   ++             T  R  S
Sbjct: 661  YDFLLARDLAEDRINNIDSVIDMMADYDSVNDNGLYGFVNFFANLESTRSDSITPTRDLS 720

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
               + VRIMTVH +KGLE  +V L               +     +     +  +  + K
Sbjct: 721  EGEDLVRIMTVHKSKGLEFKIVILAGADKGFNKQVDP--IIFDEKIGIGINVADYENKIK 778

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
              +     +I+  ++  ++E  R+LYV +TRA ++L I  + + ++            + 
Sbjct: 779  IPSINRKLIIEKSREDDKKEEMRILYVALTRAEERLYITGNFDKNSSAFEKVYKNESYLT 838

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWST----------HHPENTPLEREETIKQLMDE 736
             + H +  +  +   N  ++      + ST              +  +   E++  +++E
Sbjct: 839  LNSHLEWIMASLSFDNITSEFFTGVKKQSTFDKRISFDFIEDVPDLSVSHNESLYDILNE 898

Query: 737  QKIPKKLFS-------PIKNDINEPYILNPSTIDTKGK---------------------- 767
            +   K L               +    L  S  +                          
Sbjct: 899  KANTKILKQIQTKLDFTYPGKDDIRKSLKKSVTELAKDFNAESDGYETFDAEGFSRNISF 958

Query: 768  --TNLESLLSDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFITSYCTKNAKLWPAKEYKN 823
               +            +G +IHK+ Q +          +N I     K       KE   
Sbjct: 959  KKPSFMEEKKAYSPTEKGSLIHKIFQKLPMKVYTAGTLENEIDRLIEKKIFDKTIKEIVE 1018

Query: 824  LLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
            +   +     N ++   +  +    SE S             ++G+ID I   Q  I + 
Sbjct: 1019 I-DKLLGFYTNSLIAELIGENIPKRSEESFLMTY----DGYYVNGQIDLIFEGQDEIILI 1073

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            ++KT     ++      T+  QL+IY++ ++++   K +   LIY
Sbjct: 1074 DFKTDMIKRED------TYQTQLAIYKQAIEEAL-GKKVTKSLIY 1111


>gi|104774001|ref|YP_618981.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii
            subsp. bulgaricus ATCC 11842]
 gi|123251916|sp|Q1GAA9|ADDA_LACDA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|103423082|emb|CAI97803.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii
            subsp. bulgaricus ATCC 11842]
          Length = 1227

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 156/1017 (15%), Positives = 318/1017 (31%), Gaps = 142/1017 (13%)

Query: 29   SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88
            +D +       +           + +++  T    +R   L +       T + N    +
Sbjct: 244  ADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAAC-QFDGTLRTNKEIAD 302

Query: 89   INKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
              +++ ++KE  K+                 +    K  +   A+  +       + E K
Sbjct: 303  FVEEAKEVKEAGKQLVFNVYTGFYASSNADQQALLAKGAEIASAAAEVELAFIDRFNELK 362

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            + + VLDF D+     ++L +   ++ + R         I++DE QDT+ +Q  +I+ L 
Sbjct: 363  RADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDGLIQRL- 421

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                      +    LF VGD KQSIY F  AEP   + +     +  +        I  
Sbjct: 422  --------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGK---QRIIF 470

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              +FRS+  +   V+ +F           D     + + +           E  V   + 
Sbjct: 471  AENFRSSQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYDPEAALPTETEVLYQED 530

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDIL 377
                  +   +  D              +   I  +I   T   +   G+ R +   DI 
Sbjct: 531  SSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIFDPKTGQTRPVSYGDIA 579

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L R +          +   + Y + +   D         +  +M+  + I + + D+  
Sbjct: 580  ILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPL 635

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCGISKFQHVIKYIHELIHIA 495
            V +L+SP+FNFS  D+ +I                 K      ++ +  +  + +L   +
Sbjct: 636  VAVLRSPIFNFSSSDLAEIRLVNKSVSFYAALRTYAKKDTDLAARCRDFLAQLQDLRDFS 695

Query: 496  QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                  +    I       +   +   G +    L          E + +  L + I+ +
Sbjct: 696  LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755

Query: 555  EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
             +                  N V++MT+H +KGLE PVVF++    +    + I   +++
Sbjct: 756  ARMRKNQKDLAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGLEHRYNYQQDITGSYVL 815

Query: 610  PSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
             +         P    + ++       L    K+   EE  RLLYV +TRA  +LI+  +
Sbjct: 816  DASGLGLSFAYPFDEAEYRADTLANVWLKIAKKQKLLEEEARLLYVALTRAKQKLILAAN 875

Query: 668  SNTS------------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
                                        ++ K  +   +     +     +    K  + 
Sbjct: 876  IKLPARTDLAGLEEKWAKEISAGRLTLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSD 935

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----------------SPI 747
            +   +  +  +    P+    +  ++         + +                    P 
Sbjct: 936  LATGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYTFSQGGYPY 995

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQ---------------------------TF 780
             +          S I       +E  L+D+                            + 
Sbjct: 996  LDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFLFQNTVSSA 1055

Query: 781  NRGLIIHKLLQVIFTLPEH---------------KRKNFITSYCTKNAKLW--PAKEYKN 823
              G   H +LQ                       +    + S   + A  W   +   K+
Sbjct: 1056 ELGTASHLVLQYYDYAKGDKNAIDSCIAGLVEKGRLSQTLASMLDREALSWFVKSDFAKD 1115

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
                  RL       T +S  +          +     I++ G ID    ++  I +F+Y
Sbjct: 1116 FYQQPDRLHREENFATILSPKTLF-----KDFSDFPGKILVHGTIDGYYEAENGIILFDY 1170

Query: 884  KTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            KT H  P++ E     +   +  QL +YE+ L +S     L   L+ +S  ++  + 
Sbjct: 1171 KTDHVNPRKQEEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVLLSCREIVEVD 1227


>gi|295401728|ref|ZP_06811694.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112464|ref|YP_003990780.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1]
 gi|294976215|gb|EFG51827.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217565|gb|ADP76169.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1]
          Length = 730

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 123/694 (17%), Positives = 232/694 (33%), Gaps = 136/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L   QV+  N             + ++ Q L   +  +     
Sbjct: 32  GAGSGKTRVLTHRIAYLLAEKQVAPWNILAITFTNKAAREMKERVQALLGGAAEEIWIST 91

Query: 66  FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106
           F  +    L                  T + +  KNI+  + I+ K  D +  L      
Sbjct: 92  FHSMCVRILRRDIDRIGIDRNFSILDTTDQLSVLKNILKEKNIDPKKFDPRSILGTISSA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K   +      +   +   Y++   +N  LDF+DLI+ T  L ++    
Sbjct: 152 KNELLSPEKFAKKAGNYYE--KIVSDVYEEYQKRLLRNHALDFDDLIMTTIQLFER---V 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +      +  +I IDE QDT+  Q+ +++ L   F          + +  VGD  QSI
Sbjct: 207 PEVLEHYQYKFQYIHIDEYQDTNRAQYMLVKMLASRF----------QNICVVGDADQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  ++              +I L  ++RST  IL   ++V     N + 
Sbjct: 257 YRWRGADIQNILSFEKDYPN--------AKVILLEQNYRSTKRILQAANEVIENNVNRKP 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW             Q+  +    +   +       A
Sbjct: 309 KK---------------------LW-------TENPEGQKIVYYEAMNEADE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +A  I   + +            +  D  VL R    + ++  +         I    
Sbjct: 334 QFVAGKIKEYVESGKR---------RYSDFAVLYRTNAQSRVMEEVL----LKSNIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I +  DD+S + ++  P        + KI         +
Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPNDDISLLRIINVPKRGIGASTLDKIVNYASENELS 440

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           V+E + +  +        +      + + +   + ++ S  +    +L     R+   + 
Sbjct: 441 VFEALGELEHIGLSARIAASLLEFRRMLEQWGQLQEYVSVTELVEEVLDKSGYREMLKAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYP--PTIKRAHSANHNEVRI 574
              E     + +DEFL+ T   E  +   SL   +++L        +  A   + + V +
Sbjct: 501 NTLEAQSRLENIDEFLSVTKHFENVSEDKSLIAFLTDLALISDIDQLNDADGEDGDAVVL 560

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H+AKGLE PVVFL+     +F H    +                             
Sbjct: 561 MTLHSAKGLEFPVVFLIGMEEGIFPHSRSLEDEDEMEEE--------------------- 599

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                         RL YVG+TRA ++L +    
Sbjct: 600 -------------RRLAYVGITRAEEELFLTSAQ 620


>gi|222152848|ref|YP_002562025.1| ATP-dependent exonuclease subunit A [Streptococcus uberis 0140J]
 gi|251764571|sp|B9DRV0|ADDA_STRU0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|222113661|emb|CAR41583.1| putative ATP-dependent exonuclease subunit A [Streptococcus uberis
            0140J]
          Length = 1220

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 157/1011 (15%), Positives = 319/1011 (31%), Gaps = 133/1011 (13%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             +E+ + + + +           +      M        K  + L            F  
Sbjct: 236  PDETIDALLQSMKETAISLRDLTDLEEYGQMTKAGKPTAKYVKHLTMIEALNDWSMHFDS 295

Query: 69   LSSFFLTQKFT-------PQKNIITQEINKK--SPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                    K         P    +T    K     D++ K+ + +     +  +  T  +
Sbjct: 296  YYGKSQIGKLAQDLSALLPSGTDVTVAGQKYPIFKDIQSKISQFRHLATLLTYQPETLPL 355

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                 +           Y EAKK     +F D+     ++L+  +    IR     + + 
Sbjct: 356  LLELQS---FVIDFTEAYLEAKKSENAFEFTDITHFAIEILQNEEA---IRKVYQSKYHE 409

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+P+   +
Sbjct: 410  VMVDEYQDNNHMQECLLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQ 458

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            + +  Q+   N      +I L  +FRS ++++   + VFS   +              ++
Sbjct: 459  KFKDYQENPEN----GKLILLKENFRSQSEVIDATNAVFSHLMDEAVGDILYDDNHYLKA 514

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                Q          V  +D+      E      D    E   ++    +   +  +I  
Sbjct: 515  GSDKQKIRYPENNCQVLIYDTDQKDNGEDEHDKEDERRTEGQETLSPGEVNILVKEIIR- 573

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAI 418
                   ++  +   DI +LV  R        L     N Y I  V    +      + +
Sbjct: 574  -----LHQEEAVPFSDITLLVSSRT----RNDLLFKTFNQYDIPLVSDGGQENYLKSVEV 624

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK------ 472
              ++   R I +  +D + V +++SP+F F+ED + +I  Q  +   V  + +K      
Sbjct: 625  MVMLDTLRSINNPLNDYALVALMRSPMFAFNEDQLARIALQDSQEGKVEHFYEKVLNSLS 684

Query: 473  --------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGN 523
                           + +   + ++     ++  S ++    I   +       +S    
Sbjct: 685  HQGQHAELITQELHDQLELFDQSLNAWRDYSRTHSLYELIWKIYNDRFYFDFVGLSPKAE 744

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELE----QYPPTIKRAHSANHNEVRIMTVHT 579
            +    L        + E+ ++  L   IS ++              +     V +MT+H 
Sbjct: 745  QAQANLYALALRANQFEKTTFKGLTRFISMIDNILNTENDLADVDLAKPKEAVNVMTIHK 804

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-----------IWIPQSKSR 628
            +KGLE   VF+++   +         + +                      +   +    
Sbjct: 805  SKGLEFKYVFILNCDKKFSMADIHSPLILSRQKGVGIKFLADVKKELNATQLPSVKLYLE 864

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS----------------- 671
                    K LK +T  E  RLLYV MTRA  +L +    +                   
Sbjct: 865  TLPYQINKKELKIATLSEQMRLLYVAMTRAEKKLYLIGKGSQEKLSQKFDTKREGQHLPK 924

Query: 672  --NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH----PENTPLE 725
               E  +N + W   ++  F + +    I                S        +     
Sbjct: 925  ALRESITNFQDWLLAIHQVFDSKDLSFTIDFVTDNELGPESIGSISHQSNIMIDDLRDNR 984

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID---------------------- 763
            + ++I + +D      +L    +  IN P +  PS +                       
Sbjct: 985  QSDSIARAIDMLNNVNQLNQKYEAAINLPTVRTPSQLKKFYQPIMDIDGVEILADKSQTP 1044

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            T  +    S      +   G  +H+L+Q I        K+       + A      E + 
Sbjct: 1045 TTFELPQFSKAKQVTSSQVGSALHELMQRIKITSHVTEKDI------QQASQLVDAEAEV 1098

Query: 824  LLL----SITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQISIS 874
            +       +    E   +   +       Y E   +        ++  +I G +D   + 
Sbjct: 1099 MAKIDLHKVKSFFEATELGRLIQVHHDKLYREAPFAMLKTDPQSQEKFVIRGIVDGFLLL 1158

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            +  I +F+YKT H+  +    +   +  Q+++Y + L+ +Y   ++   LI
Sbjct: 1159 EDKIILFDYKTDHY--KTPLEMKLKYQEQMALYAESLRKAYDISTIESYLI 1207


>gi|288554983|ref|YP_003426918.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
 gi|288546143|gb|ADC50026.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
          Length = 742

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 128/755 (16%), Positives = 241/755 (31%), Gaps = 140/755 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    ++  N             +  +   L            
Sbjct: 33  GAGSGKTRVLTHRIAYLLREKAIAPWNVLAITFTNKAAREMKDRVAKLVGPVAEDIWIST 92

Query: 66  FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       ++ +  + I+ K  D +  L      
Sbjct: 93  FHSMCVRILRRDIDRIGYNRNFTILDSSDQLSVIKQILKNKNIDPKKFDPRSILGTMSGW 152

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             +++   +   M ++T      A  +   Y++  KKN  LDF+DLI+ T +L K   + 
Sbjct: 153 KNELKKPDDC--MRQATGPYDQTAAEVYVEYQKQLKKNHALDFDDLIMKTIELFK---LV 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +IL+DE QDT+  Q+ ++R L++ +            +  VGD  QSI
Sbjct: 208 PEVLEFYQRKFQYILVDEYQDTNKAQYMLVRMLSDKYE----------NICVVGDSDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  +              ++I L  ++RST  IL   +KV     N + 
Sbjct: 258 YRWRGADIANILSFEEDYPN--------ATVILLEQNYRSTKMILNAANKVIENNFNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW       ++   P+   + +         +    A
Sbjct: 310 KN---------------------LW------TENDDGPKIGYYGA--------DTEQSEA 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +   I     +    +          DI +L R    + +I            I    
Sbjct: 335 QFVVEKIREATRSGEHTN---------SDIAILYRTNAQSRVIEEYF----VKSNIEYNI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I + +DD+S   ++  P        + KI      +  +
Sbjct: 382 VGGTKFYDRKEIKDVLAYLRLIANPDDDISLQRIINVPKRGIGATTVDKIGAYAVEQGLS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++  +Q+          + K +     +   I + ++ S  +    +L     R    + 
Sbjct: 442 LFAALQEIEQVGLTARTVGKLKDFRDQLSHWIQMQEYLSVTELVEELLEKTGYRDMLRNE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANH---NEVR 573
              E     + +DEF+  T   E+++   SL   +++L       K          + + 
Sbjct: 502 QSIEAQSRLENIDEFITVTNEFEKSNDDKSLVAFLTDLALVADIDKLDDENEGKPKDAIT 561

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE P+VFL+     +F H                                 
Sbjct: 562 LMTLHSAKGLEFPLVFLIGMEEGIFPHSRSLFEAEEMEEE-------------------- 601

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                          RL YVG+TRA  QL I      +   K+N       + +      
Sbjct: 602 --------------RRLAYVGITRAEKQLYITNARMRTLYGKTNTNPPSRFISEIPEECL 647

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                            A   +   P   P  R  
Sbjct: 648 EQVNEDKPTPA---WMKASRGTASAPAAKPKVRAS 679


>gi|315640911|ref|ZP_07896007.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus DSM
            15952]
 gi|315483329|gb|EFU73829.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus DSM
            15952]
          Length = 1226

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 143/1016 (14%), Positives = 323/1016 (31%), Gaps = 135/1016 (13%)

Query: 25   YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
              Q S++   +  + +       +     +     Q  +    L +  F  +  + +K  
Sbjct: 241  AMQQSEVEALLEKAYQLLAAEFEQLVALKEAILSDQIDDMYVRLTTPIFAKRYPSYRKEE 300

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRD------RFNTYKMFKSTLASLTLAKYLNAHYE 138
            + + +++    +++++K   D   +              +          L +     ++
Sbjct: 301  V-KILSEPIKRIRDEVKSQFDTMKEYFPYDPKVMGDLMRQSQPLVKEISRLTELFAERFQ 359

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            + K +  +LDF DL   T  +L         +    Q  + +L+DE QD + +Q  ++  
Sbjct: 360  QRKLEKGLLDFNDLEHWTLAILTNEQADVSPQTFYRQHFSEVLVDEYQDINRLQQAILER 419

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            + +         ++P  LF VGD KQSIYSF  A+P   + +    ++      Q    I
Sbjct: 420  VAQ---------ANPGNLFMVGDVKQSIYSFRLADPTLFIDKYDHYRQH-----QDGEKI 465

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            +L  +FRS  ++L+  + +F    + +    D     +  +         + +E  +  +
Sbjct: 466  DLRENFRSREEVLSFTNFIFEQLMDRKVGQIDYQDEAKLVAGATYYEDQSEFFEPEILLY 525

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKD 375
            + +   +   +         ++ A      +A  I  ++       + K    R I+  D
Sbjct: 526  EKENEEELAFF---------DTKAEGEIHLVAQKICQLLNNQQTILDRKSMTMRPIRYAD 576

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I++L   R +   +  + +     Y++ +  ND         I+ +++L + I +   D+
Sbjct: 577  IVLLTPTRGNHLKMVDIFKE----YELPLELNDAQNYFQTTEIQVILSLLQIIDNPLQDI 632

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHE-------TETVYEYIQKFANCGISKFQHVIKYI 488
             FV +L+SP+   +ED +  +   + +          +        +    K Q     +
Sbjct: 633  PFVSVLRSPIVGLTEDQLVTLRLAKRDVTFYQAFQVYLKNGTDDVNDPLQRKVQKFANQL 692

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
                 +A+  +  D   LI          +    G +    L   ++     E+ S+  L
Sbjct: 693  ERWRKVARKVAVADLLWLIYDETAYPDFMLGLPSGKQRYANLMALVSRAEDYEKTSFRGL 752

Query: 548  QELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + I  +E+     K           + VR+MT+H +KGLE PVVFL+D   ++      
Sbjct: 753  YQFIRFVEKMREKDKDLVEPVAEMTGDAVRVMTIHASKGLEFPVVFLMDATKELNMQDLR 812

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVS------------------------------ 633
            K   +  +               +    V+                              
Sbjct: 813  KNYLLDENEGIGIQYLSSQRVHYATLPFVALKQVKLRKLLSEEMRKLYVALTRAEQKLYL 872

Query: 634  --------DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                    +  K       EE   L       +   L+           K  Q   +   
Sbjct: 873  VGSYKNKQEAYKKWLTVQYEEEQFLDEASRLVSKTSLMDWIGKTLVRHPKMQQYFEHAES 932

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                 +      +    +    E  +  ++  H  +  LE  +  + +    +       
Sbjct: 933  IVKTIDHPAKFALHWYTAEEILEQRSTWFAQLHVTHPTLETAKEYETIPTVLQRRLDFQY 992

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESL------------------------------LS 775
            P +         + S I    +   +                                  
Sbjct: 993  PHQKATMTTSYQSVSEIKRLYQDPDDMEDNRYDWFASQEDKKGYRLVNQGLAVPEFMKTK 1052

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA--KLWPAKEYKNLLLSITRLLE 833
                   G   H++LQ +  L     +    ++  +    + +P      +         
Sbjct: 1053 RLDPTFIGQATHRILQHLP-LATDWERVAFDAWLEEFYLHQGFPDDLIAAIDHEALWWFY 1111

Query: 834  NPMMT---TAMSCDSYSEVSVSG---------KINCPKKDIIISGRIDQISISQQNIFIF 881
               +    +  +     E   S                 +++I G ID     +  + ++
Sbjct: 1112 ESDLRKMMSLHADCVQREQPFSMLRQAKTIYHNFGDDDAEVLIHGIIDGYIEFEDEVILY 1171

Query: 882  EYKTHHH-VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFII 935
            ++KT H    +  E +  ++  QL +Y++ L+++   K +    LI +S+ K+  +
Sbjct: 1172 DFKTDHISAAKTEEALIDSYRGQLMLYKEALQNAL-KKPVESVYLILLSQKKMVTL 1226


>gi|313123657|ref|YP_004033916.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus delbrueckii
            subsp. bulgaricus ND02]
 gi|312280220|gb|ADQ60939.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus delbrueckii
            subsp. bulgaricus ND02]
          Length = 1227

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 156/1030 (15%), Positives = 310/1030 (30%), Gaps = 141/1030 (13%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
                   L     F      KY     +           + +++  T    +R   L + 
Sbjct: 233  LADKLAALMAEADFDHEKFAKY-----QPAFTAFATSLASYRESLATDDPFDRQRELLAA 287

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLA 125
                  T + N    +  +++ ++KE  K+                 +    K  +   A
Sbjct: 288  C-QFDGTLRTNKEIADFVEEAKEVKEAGKQLVFNVYTSFYASSNADQQALLAKGAEIASA 346

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDE 184
            +  +       + E K+ + VLDF D+     ++L +   ++ + R         I++DE
Sbjct: 347  AAEVELAFIDRFNELKRADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDE 406

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT+ +Q  +I+ L           +    LF VGD KQSIY F  AEP   + +    
Sbjct: 407  YQDTNALQDGLIQRL---------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEY 457

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
             +  +        I    +FRS+  +   V+ +F           D     + + +    
Sbjct: 458  GQENSADK---QRIIFAENFRSSQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYD 514

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                   E  V   +       +   +  D              +   I  +I   T   
Sbjct: 515  PEAALPTETEVLYQEDSSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIF 563

Query: 365  N---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            +   G+ R +   DI +L R +          +   + Y + +   D         +  +
Sbjct: 564  DPKTGQTRPVSYGDIAILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVI 619

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV--YEYIQKFANCGIS 479
            M+  + I + + D+  V +L+SP+FNFS  D+ +I                 K      +
Sbjct: 620  MSYLKIIDNPDQDIPLVAVLRSPIFNFSSSDLAEIRLVNKSVSFYTALRTYAKKDTDLAA 679

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538
            + +  +  + +L   +      +    I       +   +   G +    L         
Sbjct: 680  RCRDFLAQLQDLRDFSLSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASA 739

Query: 539  NEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             E + +  L + I+ + +                  N V++MT+H +KGLE PVVF++  
Sbjct: 740  YESSGFKDLYQFINFIARMRKNQKDLAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGL 799

Query: 594  GSQVFSHKHIKKMHIMPSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
              +    + I   +++ +         P    + ++     + L    K+   EE  RLL
Sbjct: 800  EHRYNYQQDITGSYVLDASGLGLSFAYPFDKAEYRADTLANAWLKIAKKQKLLEEEARLL 859

Query: 652  YVGMTRASDQLIICK----------------HSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
            YV +TRA  +LI+                   +   +  +        +          +
Sbjct: 860  YVALTRAKQKLILAANIKLPARTDLAGLEEKWAKEISAGRLPLLDKMKVAKPLDFLAPAL 919

Query: 696  KKIKLTNSINKDEWIAYE------------------------WSTHHPENTPLEREETIK 731
             + K    + +                                +         E E  + 
Sbjct: 920  ARAKQVKRLGEKAVSDLATGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVF 979

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ------------- 778
            +  ++     +   P  +          S I       +E  L+D+              
Sbjct: 980  KQAEKLYAFSQGGYPYLDASRTTAYQAVSEIKKAFGDPIEDELADSHISELQSANRYLQP 1039

Query: 779  --------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYK 822
                          +   G   H +LQ          K+ I S                 
Sbjct: 1040 IDTEPDFLFQNTVSSAELGTASHLVLQYYDYAKGD--KDAIDSCIADLVEKGRLSQTLAS 1097

Query: 823  NLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINCPKKDIIISGRIDQ 870
             L                        + E + +            +     I++ G ID 
Sbjct: 1098 KLDREALSWFVKSDFAEDFYQQPDRLHREENFATILSPKTLFKDFSDFPGKILVHGTIDG 1157

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
               ++  I +F+YKT H  P++ E     +   +  QL +YE+ L +S     L   L+ 
Sbjct: 1158 YYEAENGIILFDYKTDHVNPRKQEEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVL 1217

Query: 927  VSEPKVFIIP 936
            +S  ++  + 
Sbjct: 1218 LSCREIVEVD 1227


>gi|73541802|ref|YP_296322.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha
            JMP134]
 gi|72119215|gb|AAZ61478.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha
            JMP134]
          Length = 1197

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 173/1007 (17%), Positives = 336/1007 (33%), Gaps = 108/1007 (10%)

Query: 4    RFGLSLNESYEL--IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS---- 57
                 L E  +   + + L      +     + ++  + T   T    A  +Q A     
Sbjct: 224  ALAECLGEDAQGEVLVQALCDEVSLERC---QSLASRLGTAGKTEQTHAGRIQDALIAIG 280

Query: 58   --------QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK------KSPDLKEKLKKS 103
                      +  E+ F+LL + F T   + +    T  + K      ++  L  +  + 
Sbjct: 281  NWREAGAVSGKPCEQAFALLRTAFFTAAGSARSLRRTSALVKSAGGESQADALLAEHGEL 340

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                 +I  R     +    LA   L   L   Y++ K +   +DF DL      L+   
Sbjct: 341  CAMLEEISARRCEAAVLAVNLALYRLGNALLERYQQYKSEQRAMDFADLEWQAACLMADE 400

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            + + +++ ++D    H+L+DE QDT+ +QW ++    + +  G        T+F VGD K
Sbjct: 401  ETATYLQVRLDARYRHLLLDEFQDTNPLQWRIL----QGWLAGYAGLGERPTVFLVGDPK 456

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            QSIY F  A+ +       + Q        + +           A++L  V+ VF     
Sbjct: 457  QSIYRFRRADARLFGAASTMLQAEFGATVLRTNRTRRN-----RAEVLAWVNAVFDSARA 511

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF---------- 333
                    T T           G V L   V ++          S ++            
Sbjct: 512  EGRYPLYETQTTAL----PEGGGPVWLLPLVEAEDKGDEALANASESADDATSEVGHRDT 567

Query: 334  ----DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                     +S      RR+A  + ++  T  +   G++R  +  D+ +LVR++      
Sbjct: 568  LLQPRRQEGDSLRLEEGRRVAAWLRHIHDTVPVHEGGEQRPARWSDMHLLVRRKTHLADY 627

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                R       I  +   R  L   L   DL AL  F+++ E DL    +LKSPL   +
Sbjct: 628  ERALRE----AGIPCLSPRRGGLLATLEALDLSALLAFLMTPESDLDLAHVLKSPLVGAT 683

Query: 450  EDDIFKICTQRHETETVYEYIQK-FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
            +DD+  +     E                    +  +  +   + +A     HD    I 
Sbjct: 684  DDDLIALSQLEGERGWWTRIEASGVPASCSDAVRDGVARLRHWLRLAPHQPVHDLIDQIF 743

Query: 509  GAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
               + R+++          +V+  LD FL  +L  +   Y SL + I EL++     ++ 
Sbjct: 744  HGGEVRRRYAEAAPPDIREQVLANLDAFLKLSLDLDGGRYPSLPKFIDELQEIRRGDEQE 803

Query: 565  HSANH------------------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                                   + V I+TVH AKGLE+P V L+D      +      +
Sbjct: 804  SPDEGGMAEDAEPTDEDPSQAGLDAVHILTVHAAKGLEAPFVVLLDANHSDPAPDRGGIL 863

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                  +  P       +   R    + L +      + E   LLYV MTRA   L++  
Sbjct: 864  IDWSPESRVPRHFSAYGKRSERGLARAPLFEAEAALGERENWNLLYVAMTRAQQGLLVSG 923

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                ++     +              E      +            +       N P   
Sbjct: 924  VKGRASRNAEAES-----------GSEISGSWYVRLQAAGVGAAVADRPPVEAGNVPAVS 972

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
              +      + ++  +  + +     +   L+   ++T G    E ++ +      G +I
Sbjct: 973  RASEPVRFTDFRLRYRDAADVARFAEDADDLDAPLLETSGD-ETEGIVFNAAAARHGELI 1031

Query: 787  HKLLQVIFTLPEHKRK----NFITSYC------TKNAKLWPAKEYKNLLLSITRLLENPM 836
            H LL+ I   P+          +  +       +  AK     + +  + ++  +L    
Sbjct: 1032 HALLERITRYPDAFDAVPDVETVLRWFPLAGAGSPGAKQAWQAQIEEAVEAVRTMLSAEA 1091

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            +   +            ++   +  ++   RID++      + I +YK    +PQE    
Sbjct: 1092 LFPLLRSADAVSARNEVELYDGRGRLL---RIDRLVEFDDRVVIIDYKL-RLLPQEHA-- 1145

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
               + +QL  Y   +   +  K +   ++  ++ +   +    +  A
Sbjct: 1146 --AYRSQLMRYVVAVTPMFRGKRVDAGVV-TAKGEWIPVEALSVPAA 1189


>gi|157964875|ref|YP_001499699.1| ATP-dependent helicase [Rickettsia massiliae MTU5]
 gi|157844651|gb|ABV85152.1| ATP-dependent helicase [Rickettsia massiliae MTU5]
          Length = 822

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 172/621 (27%), Positives = 295/621 (47%), Gaps = 39/621 (6%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              F T+    +++++++E+ +K P L  +L+K   E  ++ +     ++   T     L
Sbjct: 237 KEIFFTKDGKKRQSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL  +    W+ +K++ EINHIL+DE QDTS
Sbjct: 297 AHIILKKYDLYKEENNLLDYDDLIYYTEKLLNNKTTHEWLLHKLESEINHILVDEAQDTS 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW +I +L  +F   +       ++F VGD+KQSI+SF GA+           +   T
Sbjct: 357 PPQWNIITTLITEFNAVE---RPNNSVFIVGDDKQSIFSFQGADLHNFNLVNERLKANLT 413

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           NA +KF  I L  S+RS A+I+     V    ++       +   +   SS     G+V 
Sbjct: 414 NANKKFKNITLKYSYRSCAEIVQFTYNVLKNIKSNYPSLFLANNPL--ISSFCTHQGSVT 471

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W  V S+       ++  W    D    +S+A +L  +I   I   I +  I  +   R
Sbjct: 472 VWPLVTSKKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIKEQIESKAILPSTANR 526

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KD ++LVRKR +    +       +  K+ V  +DR  L ++L I DL++L +F+L
Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEVSDRMNLKENLTIMDLISLAKFVL 582

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +DDL+   +LKSP+   SE  ++++   + E               +S  + +   + 
Sbjct: 583 LPDDDLNLAGLLKSPIIGISEQQLYELLVNKSENS---------LWDILSSHEEIYNKLD 633

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            LI I +     +FF L++     R+ +     ++  D+++E L  +     +  +SLQ 
Sbjct: 634 SLIEIYKISIVENFFDLVVHNLNLREIY----DDDSDDMINELLTLSKNYANDIDNSLQG 689

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++  E     IKR    + +++R+MTVH +KGLE+P+V L D+ +   S          
Sbjct: 690 FVAWFENNDIYIKRDM-EHSDKIRVMTVHGSKGLETPIVILCDSTTLPISSNKF------ 742

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             + DD G   +   +      + +L +  K    +EY RLLYV MTRA D+LIIC    
Sbjct: 743 --IWDDKGEMFFSANAADTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDKLIICGF-- 798

Query: 670 TSNEKKSNQRTWYDMVYDSFH 690
            SN+    +  WYD+   +  
Sbjct: 799 -SNKSTIPENCWYDIAKQTCD 818


>gi|325125706|gb|ADY85036.1| ATP-dependent exonuclease subunit A [Lactobacillus delbrueckii subsp.
            bulgaricus 2038]
          Length = 1227

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 157/1017 (15%), Positives = 318/1017 (31%), Gaps = 142/1017 (13%)

Query: 29   SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88
            +D +       +           + +++  T    +R   L +       T + N    +
Sbjct: 244  ADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAAC-QFDGTLRTNKEIAD 302

Query: 89   INKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
              +++ ++KE  K+                 +    K  +   A+          + E K
Sbjct: 303  FVEEAKEVKEAGKQLVFNVYTSFYASSNADQQALLAKGAEIASAAAEAELAFIDRFNELK 362

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            + + VLDF D+     ++L +   ++ + R         I++DE QDT+ +Q  +I+ L 
Sbjct: 363  RADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDGLIQRL- 421

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                      +    LF VGD KQSIY F  AEP   + +     +  +        I  
Sbjct: 422  --------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGK---QRIIF 470

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              +FRS+  +   V+ +F           D     + + +           E  V   + 
Sbjct: 471  AENFRSSQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYDPEAALPTETEVLYQED 530

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDIL 377
                  +   +  D              +   I  +I   T   +   G+ R +   DI 
Sbjct: 531  SSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIFDPKTGQTRPVSYGDIA 579

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L R +          +   + Y + +   D         +  +M+  + I + + D+  
Sbjct: 580  ILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPL 635

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCGISKFQHVIKYIHELIHIA 495
            V +L+SP+FNFS  D+ +I                 K      ++ +  +  + +L   +
Sbjct: 636  VAVLRSPIFNFSSSDLAEIRLVNKSVSFYAALRTYAKKDTDLAARCRDFLAQLQDLRDFS 695

Query: 496  QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                  +    I       +   +   G +    L          E + +  L + I+ +
Sbjct: 696  LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755

Query: 555  EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
             +                  N V++MT+H +KGLE PVVF++    +    + I   +++
Sbjct: 756  ARMRKNQKDLAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGLEHRYNYQQDITGSYVL 815

Query: 610  PSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
             +         P    + ++     + L    K+   EE  RLLYV +TRA  +LI+  +
Sbjct: 816  DASGLGLSFAYPFDEAEYRADTLANAWLKIAKKQKLLEEEARLLYVALTRAKQKLILVAN 875

Query: 668  SNTS------------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
                                        ++ K  +   +     +     +    K  + 
Sbjct: 876  IKLPARTDLAGLEEKWAKEISAGRLTLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSD 935

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----------------SPI 747
            +   +  +  +    P+    +  ++         + +                    P 
Sbjct: 936  LATGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYTFSQGGYPY 995

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQ---------------------------TF 780
             +          S I       +E  L+D+                            + 
Sbjct: 996  LDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFLFQNTVSSA 1055

Query: 781  NRGLIIHKLLQVIFTLPEHKRK---------------NFITSYCTKNAKLW--PAKEYKN 823
              G   H +LQ        K                   + S   + A  W   +   K+
Sbjct: 1056 ELGTASHLVLQYYDYAKGDKDAIDSCIAGLVEKGRLSQTLASMLDREALSWFVKSDFAKD 1115

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
                  RL       T +S  +          +     I++ G ID    ++  I +F+Y
Sbjct: 1116 FYQQPDRLHREENFATILSPKTLF-----KDFSDFPGKILVHGTIDGYYEAENGIILFDY 1170

Query: 884  KTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            KT H  P++ E     +   +  QL +YE+ L +S     L   L+ +S  ++  + 
Sbjct: 1171 KTDHVNPRKQEEAIQKLKEKYQGQLRLYERALNESGRLSVLKKYLVLLSCREIVEVD 1227


>gi|150015241|ref|YP_001307495.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
 gi|149901706|gb|ABR32539.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
          Length = 755

 Score =  328 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 120/713 (16%), Positives = 253/713 (35%), Gaps = 132/713 (18%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL------LSSF 72
           D+ P     ++  NK      +     I ++A+ +  ++                   S 
Sbjct: 48  DIAPYSILAITFTNKAAKEMKDRVKALIGERAENMWISTFHSTCVRILRREIDKIGYKSS 107

Query: 73  FLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF----KSTLA 125
           F     + QK ++    + +N    D+ E+  +   +  K +DR  + + F    ++   
Sbjct: 108 FTIYDSSDQKTLVKECMKTLNINDKDITEQ--EIMGKIGKAKDRMQSVRSFMLENEANFR 165

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +A  +   Y++  K+N  LDF+DLI  T +L K       +      +  +I++DE 
Sbjct: 166 EKKIA-DVYEMYQKRLKENNALDFDDLIFKTVELFKNNPG---VLEFYQNKFKYIMVDEY 221

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+++ L   +          + +  VGD+ Q IY + GA+ + +L  ++   
Sbjct: 222 QDTNGAQYELVKLLASKY----------KNICVVGDDDQCIYQWRGADIQNILDFEKDYP 271

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      +I+L  ++RS  +IL+  + V     N +                    
Sbjct: 272 --------GAKVIKLEQNYRSKGNILSAANVVIVNNANRKSKVL---------------- 307

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                      + + +   + + + +Y DS   +         ++  I ++   +     
Sbjct: 308 -----------RTEQEPGNKIKIYRAYADSDEGD--------FVSKQILDIKNKEDK--- 345

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D  +L R    + +     R       +           D   IKD++A  
Sbjct: 346 ------NYNDFAILYRTNAQSRIFEESFR----RKGVPYKIVGGTRFYDRKEIKDVLAYL 395

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQK------FANCGI 478
           + I++ +DD+S   ++  P  +  +  + K+       E  +++ + +        +  +
Sbjct: 396 KVIVNPQDDISIRRIINVPKRSIGDATVAKVQEFASSFEFDLWDALAEVRSIPTLTSRNV 455

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
           S  +  +  +   + +++          IL      +Q       E    I+ L E ++ 
Sbjct: 456 STIEPFVALMENFMELSETVPVSVLIESILKDTGYLKQLQESNEIEDKSRIENLKELVSD 515

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E+N+    + L + LE+              + V +MT+H+AKGLE PVVF+V   
Sbjct: 516 AADFEKNNED--KSLSAYLERVSLVQDTDKIEEEDDAVVLMTIHSAKGLEFPVVFMVGME 573

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
           + +F                                         K+S  EE  RL YVG
Sbjct: 574 NGIFPGNASF----------------------------------EKESEMEESRRLCYVG 599

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +TRA   L +          K+      D + +   + +    +K  ++ +++
Sbjct: 600 ITRAKQTLFMTSAEVRRVFGKTVAYPQSDFINEIKPDLKEYVGVKKESAKSRE 652


>gi|269838114|ref|YP_003320342.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
 gi|269787377|gb|ACZ39520.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
          Length = 1125

 Score =  328 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 138/967 (14%), Positives = 287/967 (29%), Gaps = 66/967 (6%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            ++   L  ++                V ++ + ++      +    +    + Q    + 
Sbjct: 186  RSLLPLVHDDVPAPDIHGFLARFEQDVDELEEILARCRNPADHGAQQIRMLMAQRDDLRA 245

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            +      L    L      QK   T  ++       ++ K+   E  +  +        +
Sbjct: 246  VRNDRDALERAILHLPKISQKGARTSWVDPAD---CDRQKEICRELNEAVEEVKRALRAE 302

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            +    L LA+     Y E +++    +FEDL+I   DLL+       +R    +    IL
Sbjct: 303  AIAGLLPLAEDFVRGYTEQRRRTGRAEFEDLLIWARDLLRD---RPEVRRYFRERFRCIL 359

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTH------SSPRTLFAVGDEKQSIYSFHGAEPK 235
            +DE QDT  +Q E++  L  +   G           +P  LF VGD KQSIY F  A+  
Sbjct: 360  VDEFQDTDPLQVEILLYLCGEEPDGVAARDWRELRPAPGRLFLVGDPKQSIYRFRRADIS 419

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                 KR              +  +  +FRS   ++  V+  F          +     +
Sbjct: 420  IYEWVKRHV--------LPGDLCTITQNFRSLGGVIDWVNGCFQHIIAPHDGVQAGYVPL 471

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                           W Q                        +   A+ LA  +   +  
Sbjct: 472  -------------DPWPQARLDLPRAPVVVVHHEMDGSADDVRRYEATTLAALLRQAVDV 518

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                      G+ R  + +D+ +L+  R    +             I             
Sbjct: 519  EGWPVRDPETGEIRPARWRDVAILIPSRTGIEIYEEALAE----AGIPYRHEGGRSFFQR 574

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
              +++L+   R I    D LS V  L+S  F  S+++IF                ++   
Sbjct: 575  QEVRELINCLRAIDDPGDRLSMVAALRSGAFGCSDEEIFLAAEAMGTDFD----YRREPP 630

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFLN 534
               +     +  + EL  +       +    ++   +  +       G++    L + ++
Sbjct: 631  PEHAAVADGMHTLRELHTLRHRLPLPELVRRVIDETRLIEYALTLPQGDQAAANLLKVVD 690

Query: 535  FTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                        L+  +  L+                A  + VR++T+H AKGLE P+V 
Sbjct: 691  QARAFAAARGGGLRAFVRWLDTATSRSTEEEDADVAEAGDDVVRLLTIHAAKGLEFPIVA 750

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L +   +       + +    ++           Q        +   +  K+    E +R
Sbjct: 751  LANLQGR---DARTRNVIPDHAVRRLHLRVGSQDQGYFETPGYAAAAEIEKQHDAAEQDR 807

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV  TRA D LI+       + +K  +                         I+    
Sbjct: 808  LLYVAATRARDHLILPVIIWKGSREKERKPKGMLARLAPHLPVPTPDHSPNGADIDGCHV 867

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP----YILNPSTIDTK 765
            +                  T   + D   + ++        + +      +   S+++  
Sbjct: 868  LLAAHLPVGDNGLRESPPATNVDVDDVLAVRERWLMERAALLKQAGAGLQVTTASSVEAW 927

Query: 766  GKTNL------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
             +            L  +     G  +H  ++ +    + + ++   +   +      A 
Sbjct: 928  DQEPADDAEATPGALPRDAALAVGTALHATMEALDLSDDGEVESMARAKAAEAGVPGHAD 987

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
            E   L  +                 +    +       P  D  + GR+D +      + 
Sbjct: 988  EVAALARACLAS------GVVQRARAAERAAREAAFTLPVGDGFVEGRVDLLFREPDGLV 1041

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            I +YKT    P++++     +  Q ++Y   + +         + ++        IP + 
Sbjct: 1042 IADYKTDRVTPEQVDARLAVYRNQAAVYAFAVAEVTGLPVKEVVFVFARAGVERAIPVDD 1101

Query: 940  LNKAFAE 946
               A   
Sbjct: 1102 GLLALGR 1108


>gi|168213169|ref|ZP_02638794.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str.
           F4969]
 gi|170715249|gb|EDT27431.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str.
           F4969]
          Length = 751

 Score =  328 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 105/576 (18%), Positives = 202/576 (35%), Gaps = 115/576 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K+N  LDF+DLI+ T +L +K +    +      +  +I+IDE QDT+ 
Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E  + L              + +  VGD+ Q IY++ GA+ + +L  ++   +    
Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS  +IL   +KV       +                         
Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +     +     +Y D         + A  +   I  +            + 
Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KSDKG 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KD  VL R    +       R       I           D   IKD++A  + I++
Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483
            +D +S   ++  P  +  +  + K+        +T+Y      +Y+       I+  + 
Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540
            I  + E++ +++  S       +L      +             I+ L+E ++  +  E
Sbjct: 460 FIDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519

Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +++    + L + LE+           A  N V +MTVH++KGLE P VFLV   + +F 
Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                                         +  EE  RL YVG+TRA 
Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++L +          K+      D + +   N +  
Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640


>gi|297583056|ref|YP_003698836.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10]
 gi|297141513|gb|ADH98270.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10]
          Length = 773

 Score =  328 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 120/673 (17%), Positives = 223/673 (33%), Gaps = 124/673 (18%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHY 137
            +KNI  ++ +          +         ++   T K F  T A     +A  +   Y
Sbjct: 153 KEKNIDKKKFDP---------RAILGMISSAKNELKTAKDFDKTAAGYFEQVASTVYEQY 203

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           E   K+N  LDF+DLI+ T  L  +      +     +   +I++DE QDT+  Q+ ++R
Sbjct: 204 ERELKRNQALDFDDLIMTTIRLFNQ---VPDVLEYYQRRFRYIMVDEYQDTNHAQYRLVR 260

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L +            + L  VGD  QSIY + GA+   +L  ++              +
Sbjct: 261 LLAD----------RHKNLCVVGDSDQSIYRWRGADIANILSFEKDYP--------DAKV 302

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  ++RST  IL   ++V S     +  +                     LW      
Sbjct: 303 ILLEQNYRSTKRILDAANRVISHNSGRKDKN---------------------LW------ 335

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
             +    ++ ++ S  +   +       A  I   I   +             ++A DI 
Sbjct: 336 -TNNDGGEKITYYSARNEHDE-------AAFIVDEIQKKLSGSE---------LKASDIA 378

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +L R    +     +   L     ++          D   IKDL+A  R + + +DD+SF
Sbjct: 379 ILYRTNAQSR----VLEELFVKSNMAYTIVGGTKFYDRKEIKDLLAYLRLVANPDDDISF 434

Query: 438 VCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN-----CGISKFQHVIKYIHEL 491
             ++  P        + K+         ++++ + +           +  +     +   
Sbjct: 435 RRIVNVPKRGIGPTTVDKLQAYADRNDLSLFQAVAEIEQVGLSARFTNMLRTFHDQLSGW 494

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-NSYSSL 547
           I +  +    +    +L     R+   +    E    ++ ++EFL      E+ +   +L
Sbjct: 495 IQMQDYVPVKELVDELLDQTGYREMLENENTLESEGRLENIEEFLTVAGEFEEASDDKTL 554

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +++L       K         V +MT+H+AKGLE PVVFL      VF H       
Sbjct: 555 IAFLTDLALIADIDKVDEEEEAEHVLMMTLHSAKGLEFPVVFLAGLEEGVFPHSCSLMEE 614

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                                    RL YVG+TRA  +L + + 
Sbjct: 615 AEMEEE----------------------------------RRLAYVGITRAEKELYLTRA 640

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
           S  +   K+N       + +          +    +   DE    + S            
Sbjct: 641 SMRTIFGKTNMNAPSRFLSEIPDELLAETGLSQGKTSAADELPWMQPSGSSNRPVNRPAP 700

Query: 728 ETIKQLMDEQKIP 740
           E +K+    + + 
Sbjct: 701 ERVKRKTVTKPVT 713


>gi|304436811|ref|ZP_07396777.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149 str.
            67H29BP]
 gi|304370183|gb|EFM23842.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149 str.
            67H29BP]
          Length = 1264

 Score =  328 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 146/1004 (14%), Positives = 307/1004 (30%), Gaps = 149/1004 (14%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-----------KS 103
            Q   +   ++ +              +K+I  + I    P+L   LK            +
Sbjct: 280  QLLISGAEDQAWERFR-VDAAAAKKQRKSIPHKSIENYDPELGGALKKKITNIYKAWDAA 338

Query: 104  QDEFIKIRDRFNTYKMFKST--LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
             D+     +     +   +T       LA   +  ++  K +  +LDF DL      LL 
Sbjct: 339  VDQLPATAEELCAAENRANTAIRQYARLALDFHHAFQNEKLERSLLDFSDLEHRALALLC 398

Query: 162  KRDV----------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
            +                I  ++      I++DE QDT+ +Q  ++R +  D         
Sbjct: 399  RHPEQLQDDLNSVDPTDIAEELRAYYAAIMVDEYQDTNGLQEGILRQIAHDD-------- 450

Query: 212  SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
                 F VGD KQSIY F  A+P       R  ++          +I +  +FRS A++L
Sbjct: 451  ---NRFIVGDVKQSIYRFRLADPSLFQHTYRAYRQ----GSSAGELITMSENFRSRAEVL 503

Query: 272  TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              ++++FS       +      + R    R          + + S  +        S   
Sbjct: 504  QPINEIFSQIMTESAVEIAYDQSARLNPGRTFDDDPA--GKSLASPLEIDLLDADYSAEE 561

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
              D   + ++ ++ +  IA  I  ++       +G  + ++  DI+VL+R  K+  +I  
Sbjct: 562  ADDEGEELAAFAVESHYIARRIKELVDAGYTVQSG--KALRWSDIVVLLRGAKERAVI-- 617

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   +  I    +D     +   I+ +++L   + +   D     +L SP+   S +
Sbjct: 618  -LMDALREAGIPSYADDTAGYFEASEIRMMLSLLAVLDNARQDTPLTAVLTSPMIGMSME 676

Query: 452  DIFKICTQRHETETVYEYI----QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            ++  +                  ++      +K +  ++ I      A   S  +    +
Sbjct: 677  ELALLRIHTPVGSIYDALKGADAEEVPPAVRNKAKEALQTIRCWRREALLHSVPELLWHL 736

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561
                       +   G      L   ++     E+ +   L   +  ++         + 
Sbjct: 737  YRTSGYYDYVGALPDGILRQANLRMLIDRAGDFERTNERGLFRFLRYMDALQRRSTDLSA 796

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             R    + + VRIMT+H +KGLE PVVFL +      +      +           +   
Sbjct: 797  ARTLGESEDVVRIMTIHRSKGLEFPVVFLANIAGAFNTQDISGDVLYHAHAGIGVRVYEN 856

Query: 622  I--PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-- 677
                + K        + + +++ T  E  R+LYV MTRA ++LI+     TS    S   
Sbjct: 857  TEIGRQKYDTLGRRSVKEVIRRETIAEEMRILYVAMTRAQEKLILTGTLRTSRSGLSRLA 916

Query: 678  ------------------------QRTWYDMVYDSFHNDERVKKI-KLTNSINKDEWIAY 712
                                       + D +  +       + + +    I   EW   
Sbjct: 917  QLRDFCQQYAREEGETFPDAAILGASCYLDWIALALMRHPDGQALMEGVEGIELREWSDE 976

Query: 713  EWS----------THHPENTPLEREETIKQLMDEQKIPKKLFSPI--------------- 747
            +                       +  +  +   + +   + +P                
Sbjct: 977  KARFAVRIEKADVRTSRSEEERAADAELSAIRSGEPLSPGVRAPYVDSILSWTYDSRGTE 1036

Query: 748  -----------KNDINEPYILNPS--------TIDTKGKTNLESLLSDNQT---FNRGLI 785
                       K +      + PS            + +       +         RG  
Sbjct: 1037 QIHAKTSVTELKRENFPDEEVLPSFAPAVGAGAGGQEWEVPRFLRTAKRAALSPMERGTA 1096

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAM-S 842
            +H L+Q +                +   +    +E    L   ++ R + + +      +
Sbjct: 1097 MHALMQHLDFAEVPDIAAIERQARSLFDQGILTEEAYQSLDVRNVWRFVSSALGRRLREA 1156

Query: 843  CDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQE 892
               Y E+     +               I + G ID +   +     + +YKT  H+   
Sbjct: 1157 KRVYRELPFGRLLPAKKYYKEAQDEADRIFLQGIIDVLFEEENGDYILLDYKTDRHI--S 1214

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
             +     +  Q+ +Y   ++     + +  C L  +   +   +
Sbjct: 1215 PQDARTRYQFQIDLYCDAVETIL-GRPVKECYLFLLDTGREVRM 1257


>gi|219851287|ref|YP_002465719.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
 gi|219545546|gb|ACL15996.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
          Length = 1019

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 133/913 (14%), Positives = 295/913 (32%), Gaps = 152/913 (16%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-SLTLAK--YLNAHYEEAKKKN 144
            +       +++L  + DE      +  + ++ ++     L L     +   YE+ K++ 
Sbjct: 136 AVIDGISAFRDELI-APDELDDYLTQKQSVQVEEAEQEYLLQLGDLLKVYRAYEQYKRER 194

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++DF+D+I     L +       +R        +IL+DE QDT+  Q ++I+ +  +  
Sbjct: 195 NLIDFDDMIHGAVTLFRSDPA---LRSSYRSRFRYILVDEFQDTNYAQLQLIKEIAGE-- 249

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      L  VGD+ Q+IY F GA    +   K+             +   L  ++
Sbjct: 250 ----------NLCVVGDDDQTIYRFRGAYLTNIRDFKQ--------WAATHTETLLDQNY 291

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           R++  +L++  +V +     +  +                                + + 
Sbjct: 292 RNSGAVLSLALQVMAGAPGRREKALF----------------------------TEKGDG 323

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLVRKR 383
           +  +  +  +   +       A  +A  I  ++GT      +G  R ++ +D  VL R +
Sbjct: 324 EPVTVAACGNDAGE-------AEYVAAEIEKLVGTPYHSRQDGGDRPLEYRDFTVLCRTK 376

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD----LSFVC 439
            D        +     + I               ++D++A  R I +           + 
Sbjct: 377 ADGKKF----QAALQRHAIPCEYQANVDFMQLPVVRDMVAYLRIIDNPLMAAVPLNRVMK 432

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA---NCGISKFQHVIKYIHELIHIAQ 496
           +   P     + +   I     + + VYE +Q  A            V++ +   I   +
Sbjct: 433 ICSIPETVVQKINAAAIKRGDDDDDGVYETMQDAASIVPDHAEPVGEVVRMLAPFIEQKE 492

Query: 497 FCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY----SSLQELI 551
             +  +    ++  A    +  ++   + V   L  F    L  ++ +       L + +
Sbjct: 493 RYTLPELVHAVMMQASGLYRSALTDTADMVRLYLATFHEIVLEFDRTTPEATIPGLLQYL 552

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             L  +P  + R      + V+I+T H +KG E PVVF+ D   + F  ++  K   +P 
Sbjct: 553 ELLGAFPVEVVREQKEAGDAVQILTAHKSKGKEFPVVFVADLAREKFPLRYSPKRFRVPG 612

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       K    +E  RLLYV MTRA ++L +       
Sbjct: 613 DLARGLRTG----------------DDEKALFVQEERRLLYVAMTRAEERLYLTYAKWYG 656

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
           + K+  + + + +   +F  +  +  ++           A +       +   E    + 
Sbjct: 657 DNKRERKPSPF-LEELNFRENPLITVVEPPACAPALPVTAGDPVEDLRTSLQEEVVRAVS 715

Query: 732 QLM---------------------------------------DEQKIPKKLFSPIKNDIN 752
           ++                                         + +I   L  P ++ I 
Sbjct: 716 EMRISTAIQTLVTLEGVREYAEQGTDDFDRDAFLAKAGSRVGADTRITTLLDPPHQSLIP 775

Query: 753 EPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR--K 802
             Y  + S + T     L+          L        G  +H +++ +   P+  +  +
Sbjct: 776 PNYRFSASALSTYQDCPLQFKFANLYRVPLPRQPQLVFGSTLHSVIEHLTRNPDPSQSLR 835

Query: 803 NFITSYCTKN---AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
           +   +   +           +      S + LL+        + +  + + V  +     
Sbjct: 836 DQGLALLEEYWSPEPYESKTQESEAHDSASALLDT--YLAWQAGNPNTVIGVEKEFTFSF 893

Query: 860 KDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
               I G ID++  +      + ++K+    P  +         QL++Y   ++  Y   
Sbjct: 894 AGHSIHGFIDRLEQTPDGNYVVIDFKSGK-KPDSLTKKAVGEHIQLNLYSMAVQQMYQVL 952

Query: 919 SLVCLLIYVSEPK 931
                L Y+ + K
Sbjct: 953 PEKAELFYLKDGK 965


>gi|157826193|ref|YP_001493913.1| ATP-dependent helicase [Rickettsia akari str. Hartford]
 gi|157800151|gb|ABV75405.1| ATP-dependent helicase [Rickettsia akari str. Hartford]
          Length = 818

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 170/621 (27%), Positives = 296/621 (47%), Gaps = 39/621 (6%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              F T+    +K+++++E+ +K P L  +L+K   E  ++ +     K+   T     L
Sbjct: 237 KEIFFTKDGKKRKSLLSKELRRKYPKLLLELEKIISEIYRLDELHRIEKLEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL       W+ +K++ EI HIL+DE QDTS
Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNNTTHEWLLHKLENEIKHILVDEAQDTS 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW +I +L   F           + F VGD+KQSI+SF G++       K   +   T
Sbjct: 357 PPQWNIITTLITAFNA---ADKPSNSTFIVGDDKQSIFSFQGSDLHNFSLVKEQLKANLT 413

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           +A +KF  I L  S+RS A+IL     V    ++       +   +   SS     G V 
Sbjct: 414 SANKKFKNITLEFSYRSCAEILQFTHNVLKNIKSNYPSLFLADNPL--ISSCRTHQGLVT 471

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W  V+S+       ++  W    D    +S+A +L  +I   I   I +  I  +    
Sbjct: 472 IWPLVMSEKQ-----EELFWALPEDYEHSKSAADLLIEKIVNFIQEQIESKEILPS-TVS 525

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KD ++LVRKR +    +       ++ K++V  +DR  + ++L I DLM++ +F+L
Sbjct: 526 TISEKDFIILVRKRDE---FSNNLIKELSNAKLNVEISDRINIKENLTIMDLMSVAKFVL 582

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +DDL+   +LKSP+   +E  ++ +   +++               +S  + +   ++
Sbjct: 583 LPDDDLNLAGLLKSPIIGINEKQLYVLLINKNDNS---------LWDNLSACEAIYAKLN 633

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            LI I +  +  +FF L++     R+ +     ++  D+++E L  +     +  +SLQ 
Sbjct: 634 ALIEIYKISTVENFFDLVVHNLNLRELY----DDDSDDMINELLTLSKHYANDIDNSLQG 689

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++  E     IKR    + +++R+MTVH +KGLE+P+V L D+ +   S          
Sbjct: 690 FVAWFENNDIYIKRDM-EHSDKIRVMTVHGSKGLEAPIVILCDSTTLPVSSNQF------ 742

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             + DD G   +          + +L +  K    +EY RLLYV MTRA D+LIIC    
Sbjct: 743 --IWDDKGEMFFSANIVDTPEFLQELKEAAKLQDLQEYIRLLYVAMTRAKDRLIICGF-- 798

Query: 670 TSNEKKSNQRTWYDMVYDSFH 690
            SN+  + +  WY++V  +F 
Sbjct: 799 -SNKSNTPENCWYEIVKQTFD 818


>gi|224541822|ref|ZP_03682361.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM
            15897]
 gi|224525245|gb|EEF94350.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1181

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 154/867 (17%), Positives = 294/867 (33%), Gaps = 102/867 (11%)

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            L    N +Y +AKK    LDF DL      LL+       +  +++  +  I++DE QDT
Sbjct: 353  LLDQFNKNYSDAKKARNELDFHDLEEYATRLLQPD---LPVVERLNHTLKEIMVDEYQDT 409

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            + +Q  ++  +          +     +F VGD KQSIY F  A+P     +     K  
Sbjct: 410  NEMQENLVLKIA--------NYDEHIPMFMVGDMKQSIYRFRQADPSIFQYKFDTFTKLE 461

Query: 249  TNAGQKFS-IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   +  I+L  ++RS   +L  V+ +F    ++     +                 
Sbjct: 462  EMTEYDTNIRIDLKYNYRSEKVVLDSVNYIFDCIMDSSVGGLEYIHGDNAILRYDFDAKG 521

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
              L      + +   +   +   S + +  + + + + A  +A  I +M          K
Sbjct: 522  TTL-----PELEKNHDFDTDILISLYKNQEEYTKSEVEAHMVAQKIISM---------KK 567

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             +  +  D  VL+R   +      +       Y I         L +   +  +M L + 
Sbjct: 568  LKDYKYHDFAVLMRATTEFITYKKVFE----RYHIPANITLSSGLFESNEVISMMTLLKA 623

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +++  DD++ + +L +    FS     ++   R   + +Y       +   SK  H ++ 
Sbjct: 624  LVNPYDDIAMLSVLHNNFL-FSHFTENELLDIRDADDPLY---INLTHHTNSKVLHFLEV 679

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSS 546
              +L + A   SP++     L     +        G +    LD  L     NE   Y  
Sbjct: 680  FDDLRNTAMTSSPYETLKKCLKETGYQAFVSQLMNGEQRSANLDILLETFRTNE--EYPY 737

Query: 547  LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L++ +  L+          +++  + V  MT+H +KGL+ PVVF+     +  S     +
Sbjct: 738  LKDYLELLDSSSSQAPGFIASDENDAVEFMTIHKSKGLQFPVVFVSAMQKKFNSSDENAE 797

Query: 606  MHIMPSLNDDP------GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            + I                P      K  +     L   +++ T  E  R+LYV +TRA 
Sbjct: 798  IIISQHDGVAGSVCKLEESPFGNIVCKYEHPYSKMLKMFIRQETVNEEMRILYVALTRAE 857

Query: 660  DQLIICKHSNTSNE------------------------------KKSNQRTWYDMVYDSF 689
             +LI+        E                                +N  +W  M     
Sbjct: 858  KKLILTGTIKDEEEIISIARQVQANDTDPTLKKGQGVVYNLAMRSTNNYLSWVLMALLRH 917

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER--------EETIKQLMDEQKI-- 739
             + +   KI +             +     ++T L R         ET++++    KI  
Sbjct: 918  KDFQEDIKILIPEIRPYLSLDRSSFKELENKDTQLARFHCTILDSSETVQRIPPYAKIKI 977

Query: 740  ---------PKKLFSPIKNDINEPYILNPSTIDTKGKT-NLESLLSDNQTFNRGLIIHKL 789
                           P   +     + +   + +     +  +  +     +RG ++H L
Sbjct: 978  ENQYRAYKKYYDFEYPYPVEPRSIAVTSMEEMKSDDTHFDFSNEGTRYLATDRGTLVHNL 1037

Query: 790  LQVIFTLPEHKRKNFITSYC-TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
            L   F   E   +  I S    +          KN L  I   + +         D    
Sbjct: 1038 LSY-FNFKEDDPEELIQSLYTNQMFDEEGLSVLKNYLPHINDFINSDTYQLIKDADQ--- 1093

Query: 849  VSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH-IPYTHIAQLSI 906
            +    +     +  +II+G  D + I    +++ +YKT        E  +   H  QLS 
Sbjct: 1094 IYQEKQFRYKDENGLIINGIFDLVFIKDNKVYVLDYKTDRVSKDNSEEVLKELHRTQLSY 1153

Query: 907  YEKILKDSYPNKSLVCLLIYVSEPKVF 933
            Y K+LK+ + +  +  ++ Y+   K  
Sbjct: 1154 YSKVLKEVF-HTDVQPIVYYLHINKAI 1179


>gi|325686249|gb|EGD28292.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii
            subsp. lactis DSM 20072]
          Length = 1227

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 151/1014 (14%), Positives = 308/1014 (30%), Gaps = 136/1014 (13%)

Query: 29   SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88
            +D +       +           + +++  T    +R   L +       T + N    +
Sbjct: 244  ADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAAC-QFDGTLRTNKEIAD 302

Query: 89   INKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
              +++ ++KE  K+                 +    K  +   A+  +       + E K
Sbjct: 303  FVEEAKEVKEAGKQLVFNVYTSFYASSNADQQALLAKGAEIASAAAEVELAFIDRFNELK 362

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            + + VLDF D+     ++L +   ++ + R         I++DE QDT+ +Q  +I+ L 
Sbjct: 363  RADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDGLIQRL- 421

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                      +    LF VGD KQSIY F  AEP   + +     +  +        I  
Sbjct: 422  --------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGK---QRIIF 470

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              +FRS+  +   V+ +F           D     + + +           E  V   + 
Sbjct: 471  AENFRSSQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYDPEAALPTETEVLYQED 530

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDIL 377
                  +   +  D              +   I  +I   T   +   G+ R +   DI 
Sbjct: 531  SSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIFDPKTGQTRPVSYGDIA 579

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L R +          +   + Y + +   D         +  +M+  + I + + D+  
Sbjct: 580  ILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPL 635

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETV--YEYIQKFANCGISKFQHVIKYIHELIHIA 495
            V +L+SP+FNFS  D+ +I                 K      ++ +  +  + +L   +
Sbjct: 636  VAVLRSPIFNFSSSDLAEIRLVNKSVSFYTALRTYAKKDTDLAARCRDFLAQLQDLRDFS 695

Query: 496  QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                  +    I       +   +   G +    L          E + +  L + I+ +
Sbjct: 696  LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755

Query: 555  EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
             +                  N V++MT+H +KGLE P+VF++    +    + I   +++
Sbjct: 756  ARMRKSQKDLAQPILSENADNSVKLMTIHASKGLEFPIVFVLGLEHRYNYQQDITGSYVL 815

Query: 610  PSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK- 666
             +         P    + ++     + L    K+   EE  RLLYV +TRA  +LI+   
Sbjct: 816  DASGLGLSFAYPFDEAEYRADTLANAWLKIAKKQKLLEEEARLLYVALTRAKQKLILAAN 875

Query: 667  ---------------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
                            +   +  +        +          + + K    + +     
Sbjct: 876  IKLPARTDLAGLEEKWAKEISAGRLPLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSD 935

Query: 712  YEWSTH--------HPENTPLEREETIKQLMDEQKIPKKLF----------------SPI 747
                           P+    +  ++         + +                    P 
Sbjct: 936  LAAGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYAFSQGGYPY 995

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQ---------------------------TF 780
             +          S I       +E  L+D+                            + 
Sbjct: 996  LDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFLFQNTVSSA 1055

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLSITRLLENPMMT 838
              G   H +LQ          K+ I S                  L              
Sbjct: 1056 ELGTASHLVLQYYDYAKGE--KDAIDSCIAGLVEKGRLSQTLASKLDREALSWFVKSDFA 1113

Query: 839  TAM---SCDSYSEVSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
                      + E + +            +     I++ G ID    ++  I +F+YKT 
Sbjct: 1114 KDFYQQPDRLHREENFATILSPKTLFKDFSDFPGKILVHGTIDGYYEAENGIILFDYKTD 1173

Query: 887  HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            H  P++ E     +   +  QL +YE+ L +S     L   L+ +S  ++  + 
Sbjct: 1174 HVNPRKQEEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVLLSCREIVEVD 1227


>gi|254696352|ref|ZP_05158180.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260760724|ref|ZP_05873067.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671156|gb|EEX57977.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 713

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 170/505 (33%), Positives = 259/505 (51%), Gaps = 19/505 (3%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61  CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLA--VPAVRLAEQIAATIRYWLD 573

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                  G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDF 503
           ++   + K +    ++A      +F
Sbjct: 689 AELAQIHKLLSRWRNMADTMPVFEF 713


>gi|241662730|ref|YP_002981090.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240864757|gb|ACS62418.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 1173

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 155/958 (16%), Positives = 320/958 (33%), Gaps = 82/958 (8%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
              +  D+  +            +             A      S      + F  L + F
Sbjct: 247  AALLADMLRVSGLLG---QGAAAEGKRAVAIESAVTAARGMDVSDEAARAQAFEALFAAF 303

Query: 74   LTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             TQ    +    T+ + K   D     L        +     + R    ++     A   
Sbjct: 304  HTQAGKARACKPTKALIKAIGDEHAQTLVTLHTTLCETLTAFQARRQEARVRAVNAALFA 363

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            L   L   Y+  K++   +DF DL      L+++ D +A+++ ++D    H+L+DE QDT
Sbjct: 364  LGDALIDRYQAYKRQARAMDFTDLEWEAARLMQQDDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            + +QW ++    + +  G     +  ++F VGD KQSIY F  A+ +     + +     
Sbjct: 424  NPMQWRIL----QGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADARLFDAAREMLVAEF 479

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +++    + R+   +L  V+ VF            +  +    +        +
Sbjct: 480  NA-----TVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQSTAVDAPT---GQAL 531

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
             L    VS+ +           +       +S      R++A  +  +   + I   G +
Sbjct: 532  LLPLVPVSEAEQADEAAPRDTLTEPREEAGDSQRYAEGRQVAACLRALHANERIREGGVE 591

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R ++  D  +LVR+++         R    D  +  +   R  L   L   DL AL  F+
Sbjct: 592  RAVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDFL 647

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEYIQKFANCGISK--FQHV 484
            ++ + DLS   +L+SP+F  S++ +  +          T +E +   A         ++ 
Sbjct: 648  MTPQADLSLAHVLRSPVFAASDEHLIALAQFGEGAAALTWWERLTALAGHADGSDTLRYA 707

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNE 540
             + +   + +A     HD    I+   + ++++  R      ++V+  LD FL   L  +
Sbjct: 708  HRMLSRWLAVAPTLPVHDLLDYIVYTGELKRRYAERAPAAIRDQVLANLDAFLKLALDLD 767

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANH--------------------NEVRIMTVHTA 580
               Y SL + ++EL       +                           + V+I+TVH +
Sbjct: 768  GGRYPSLPKFMAELRAIRQGDEDESPDEGMQGDTEAPDTIDAEVASEGLDAVQILTVHAS 827

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE+P V L+D+            +   P     P       ++  R      L K   
Sbjct: 828  KGLEAPFVVLLDSHHSDARVDTAGILIDWPPGAQAPAHFSAFGKTSERGLARELLFKQEN 887

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
               + E   LLYV MTRA   LI+   +N  +               +  + +     ++
Sbjct: 888  ALAERENWNLLYVAMTRARQALIVSGVANKRD-------------ATAAQSLDEGDAPEV 934

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
              + +    +A               +        E        +P+   +         
Sbjct: 935  DGTASWYTLLASAGVASPAAMLDDVADSVSSAAGHEVVSYHDFRAPLTVTVR-------V 987

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAK 819
                        ++ D     +G ++H +L+ +      K+     +      A      
Sbjct: 988  GAAGAPAEGAADIVFDQGAVAQGELLHAVLERLTRRGLPKQAPDAETIARWFGATGVTQA 1047

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
            +      ++ R+L    +        +       ++      ++   RID++      + 
Sbjct: 1048 DATRAADAVRRMLSAEALVHVFDPARFDAAHNEIELFGRDGALL---RIDRLIERGNEVL 1104

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
            + +YK    +P E       +  QL  Y   +   YP +++    +  ++ +   +  
Sbjct: 1105 VVDYKL-RLLPVE----RAAYADQLRGYVAAVTPMYPGRAVRAG-VATAQGEWIDLDA 1156


>gi|171779650|ref|ZP_02920606.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171281752|gb|EDT47186.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 1208

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 156/1018 (15%), Positives = 336/1018 (33%), Gaps = 138/1018 (13%)

Query: 9    LNESYELIYKDLWPLPYF--QVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
             ++        +         V+D+  Y       G PT     + L            F
Sbjct: 236  PDQEVMDFLACMHETANQLQDVTDLEDYKQ-VTAKGTPTA-NYKKHLNMIEHLHEWAMHF 293

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTYKMF 120
              L           +      ++    P +          K  Q+    ++     +K  
Sbjct: 294  ETLYGH----DGLGRLAADVADLIPSGPAVTVAGVKYPVFKTLQERLTGLKHLETIFKYQ 349

Query: 121  KSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
              +L  L       +  +  Y +AK +    +F D+      +L++      IR     +
Sbjct: 350  SESLPLLELLQAFMQDFSEQYLQAKIQENAFEFSDIAHFAIQILEENPD---IRELYQDK 406

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             + +++DE QD +  Q  ++  L           S+    F VGD KQSIY F  A+P+ 
Sbjct: 407  YHEVMVDEYQDNNHTQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQI 455

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
              ++ +  Q+   +      +I L  +FRS +++L   + VF+       L ++S   I 
Sbjct: 456  FNQKFKDFQEHPEH----GKLILLKENFRSQSEVLDATNSVFTH------LMDESVGEIL 505

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
            +        G+    E              +  +    S  +E       + +A  I  +
Sbjct: 506  YDGMHQLVAGSPAQKEAHPENKTQVLIYDTDDSSELASSPEEEQINPNEVKLVAKEIIRL 565

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDH 415
               +          +  +DI +LV  R                Y I  V           
Sbjct: 566  HNEE---------GVAFEDITLLVSSRTR----NDGILQTFEHYGIPLVTDGGEQNYLKS 612

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            + +  ++   R + +  +D + V +++SP+F+F+EDD+ ++  Q +E ET     QK  +
Sbjct: 613  VEVMVMLDTLRALDNPLNDYALVALMRSPMFSFNEDDLARLALQTNEDETRANLYQKLEH 672

Query: 476  CG--------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520
                              K +  +    +    A++ S +D    I   +       +  
Sbjct: 673  ALANQGQHAELVTPALRQKLKVFMTCFSKWRDFAKWHSLYDLIWKIYNERFYYDYVGNLP 732

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMT 576
               +    L          E+  +  L   I  +++   +             + V +MT
Sbjct: 733  RAEQRQANLYALALRANNFEKTGFKGLSRFIRMIDRVLESENDLADVEVALPKHTVNLMT 792

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQS 625
            +H +KGLE   VF+++   +      +  + +                          + 
Sbjct: 793  IHKSKGLEFKYVFILNIDKKFSIQDMMSPLILSRQNGAGIKYLADMREELDTDVFPTVKV 852

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN------------- 672
                       + L+ +T  E  RL YV MTRA  +L +    ++               
Sbjct: 853  SMDTLPYQLNKRELRLATLSEQMRLFYVAMTRAEKKLYLVGKGSSEKLVDKYSGKSENNH 912

Query: 673  ----EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW----STHHPENTPL 724
                E+++       M+           K+K     +  E    +     +    + +  
Sbjct: 913  LPVAEREAFMTFQDWMLAIHEAYKNLPFKVKFVTDEDLTEEKIGQIEVKSAIKPDDLSNN 972

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---------------- 768
             + E I + ++  +  ++L +  ++ IN P +  PS +    +                 
Sbjct: 973  RQSENIAEALERLEAVEELNAKYQSAINLPSLRTPSQVKKLYEPVMDTDGVDVMAKTDHV 1032

Query: 769  ------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                     S  +  +    G  +H+L+Q IF   +   ++  T+    +A+     + +
Sbjct: 1033 KPSFALPDFSKKAKVEATAIGSAMHELMQRIFLSQKVTLEDISTALAQVSAE--DEVKAR 1090

Query: 823  NLLLSITRLLENPMMTTAMSCDS---YSEVSVSGKINCPK--KDIIISGRIDQISISQQN 877
              L ++    EN  +   +  ++   Y E   +     P+  +  ++ G +D   + +  
Sbjct: 1091 IRLENVLDFFENSTLGQLIQQNTDKIYREAPFAMLKEDPESKEKFVVRGIVDAYLLLEDR 1150

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            + + +YKT  +     E I   +  Q+++Y + L  SY    +   L+ +   ++ ++
Sbjct: 1151 LVLLDYKTDKYT--NSEEIKDRYQGQMALYAEALSKSYHIDQVDKYLVLLGGERLEVV 1206


>gi|149178399|ref|ZP_01856989.1| UvrD/REP helicase [Planctomyces maris DSM 8797]
 gi|148842716|gb|EDL57089.1| UvrD/REP helicase [Planctomyces maris DSM 8797]
          Length = 1171

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 142/872 (16%), Positives = 292/872 (33%), Gaps = 93/872 (10%)

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
            I     +L+E LK   +      D        + +L  L +++Y    Y+E+K +  +LD
Sbjct: 294  IRDGFKELRETLKPVYETLSP--DPAGFLAAAEFSLVVLRVSEYAAKCYQESKAEKGLLD 351

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F+DL++ T DL ++   +   R +    I+++++DE QDT  +Q E++R+L     +   
Sbjct: 352  FDDLLLQTRDLFRRDPNA---RQRAAAGIHYLMVDEFQDTDPVQSEIVRALCGKELLTG- 407

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                   LF VGD KQSIY F  A+P+   + ++   ++          + L  +FRS  
Sbjct: 408  ------KLFLVGDAKQSIYRFRRADPEVFHQLRQEIPEKG--------RLPLSTNFRSQP 453

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
             IL   + +F+        S       +H  +                           +
Sbjct: 454  AILNFTNCLFASAMAHYYESLTPFDQQQHSPTP--------------------GIEFLFA 493

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--------SNGKKRVIQAKDILVLV 380
                 D    ++     A  IA  I  ++  +T             + R ++  DI +L 
Sbjct: 494  SPDDPDIKLADAIRETEADWIAARIRQLLEDETPRIWSKNPQSGERELRRVEPGDICILF 553

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R      L     +     + +               I DL  L +++ S +D+LS + +
Sbjct: 554  RSLSSVSLYEKALQE----HNLDYYLVGGRAFYAQQEIYDLSNLCQYLDSSDDELSLLGL 609

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFC 498
            L+SP F+ S+D I+ I           +           K   ++    + EL       
Sbjct: 610  LRSPFFSLSDDTIYAITRHAESLTAAMQVAPPDHVRPEQKRQVRYAQAVLQELRTKKDRL 669

Query: 499  SPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
            S  +   L L         ++   G+  +  L + +      E +   +L++ +  +   
Sbjct: 670  SLVELLNLALERTGYDAALLNEFLGDRKLANLRKLIELARNFEASGLFTLKDFVQRIRDS 729

Query: 558  PPTIKRAH-----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                 +           + +R+MT+H +KGLE PVV + D   +    +   K   +   
Sbjct: 730  ILEESKEELAATLPETSDVIRLMTIHQSKGLEFPVVIVADMDRR---SQGASKDPFLHPE 786

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                            N          + + ++E  RLLYV +TRA+D LI+        
Sbjct: 787  WGALLNLPAERGVTPENFAFKMHRAIEQNADEDETVRLLYVAVTRAADYLILSAGLPYDR 846

Query: 673  EKKSNQ---RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE- 728
              +S      + +  +       +         ++ +D+        + P+      ++ 
Sbjct: 847  RVQSPWMKLLSRHFDLSTGLPTLDPYLGHFTMGNVQQDQIPEIRVHLNRPQTATKPAKKI 906

Query: 729  --------TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---- 776
                                 + F+      N     + S ++       E         
Sbjct: 907  KELKPSQFWAALEQGSPGGYPETFTVFAPQKNRQSHFSVSHLEVADALIQELPEPQYQRL 966

Query: 777  --------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                    ++    G + H +++ +  L   +    +        ++   K    +   I
Sbjct: 967  STADLLNADEATQLGTLTHSVIERLDPLKPEQSDRIVELVLFDQPQVAGDKLKPLIQQQI 1026

Query: 829  TRLLENPMMTTAMSCDS-YSEVSVSGKINCPKKD---IIISGRIDQISISQQ-NIFIFEY 883
                E+ + +   +    Y E+    ++         + ++G ID +  +      + +Y
Sbjct: 1027 AAWYESEICSALKAARVHYRELEFLLRLPATSDKESAVTVTGMIDAVYQTDDQRWVVLDY 1086

Query: 884  KTH-HHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            KT         E +   +  QL +Y   ++  
Sbjct: 1087 KTGARLAQLADEELISEYEFQLGVYTLAVEQL 1118


>gi|220927829|ref|YP_002504738.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10]
 gi|219998157|gb|ACL74758.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10]
          Length = 785

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 112/619 (18%), Positives = 213/619 (34%), Gaps = 115/619 (18%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            IN+K+   K  L+    +  ++ D  +  K++ S      +AK +   YE+  K N  L
Sbjct: 128 SINEKNFPPKSVLETIGKQKDELIDAVHYEKLYASDFRMGKIAK-IYKLYEKKLKANNAL 186

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+I+NT  L  K      +     +   +IL+DE QDT+  Q+ ++R L+E      
Sbjct: 187 DFDDIIMNTIKLFDKYPE---VLDYYQRRFRYILVDEYQDTNTAQYTLVRKLSE------ 237

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
               +   L  VGD+ QSIY + GA  + +L  ++  +K           I+L  ++RST
Sbjct: 238 ----AQENLCVVGDDDQSIYGWRGANIRNILDFEKDFKK--------CCTIKLEQNYRST 285

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +IL   + V       +  S               + G+  +                 
Sbjct: 286 QNILDAANHVIGNNTGRKCKSL----------WTDNKGGSKIV----------------- 318

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   + +  +    A   A  I  +I  +           + KD  VL R    + 
Sbjct: 319 --------ICENDNEHEEALYAAREIQRLIFDEDR---------KYKDFAVLYRINAQSR 361

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           ++  +         I           D   IKD++A  R + +  D++S   ++  P   
Sbjct: 362 VLEEMF----MREGIPYKIVGGQKFYDRKEIKDIIAYMRLVQNPGDNVSLKRVINVPKRG 417

Query: 448 FSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPH 501
             +  +            +++  I              K  +    I++   + +  +  
Sbjct: 418 IGDTTVENAEILAYQGDVSLFTVISNAEEFPSLKRAAQKLGNFSLMINKFRTMKEHMTIS 477

Query: 502 DFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQY 557
               +++      +++      E     + + E  +  +  E Q+  +SL+E ++ +   
Sbjct: 478 QMLDMVVEDSGILREYELENTVEAQSRIENIKELKSVAIEFEKQSEDNSLEEFLAHISLV 537

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                 +   + + V +MT+H+AKGLE PVVF+      VF                   
Sbjct: 538 SDID--SLQEDQDYVVLMTMHSAKGLEFPVVFIPGMEEGVFPGYRAITEGP--------- 586

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                                      EE  RL YVG+TRA ++L +      +    S+
Sbjct: 587 ------------------------EQLEEERRLCYVGITRAREKLYLSNARFRTLFGNSS 622

Query: 678 QRTWYDMVYDSFHNDERVK 696
                  + +         
Sbjct: 623 YNRPSRFLAEIPEELVEYP 641


>gi|169347181|ref|ZP_02866123.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str.
           JGS1495]
 gi|169296864|gb|EDS78993.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str.
           JGS1495]
          Length = 751

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 104/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K+N  LDF+DLI+ T +L +K +    +      +  +I+IDE QDT+ 
Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E  + L              + +  VGD+ Q IY++ GA+ + +L  ++   +    
Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS  +IL   +KV       +                         
Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +     +     +Y D         + A  +   I  +            + 
Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KSDKG 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KD  VL R    +       R       I           D   IKD++A  + I++
Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483
            +D +S   ++  P  +  +  + K+        +T+Y      +Y+       I+  + 
Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540
               + E++ +++  S       +L      +             I+ L+E ++  +  E
Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519

Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +++    + L + LE+           A  N V +MTVH++KGLE P VFLV   + +F 
Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                                         +  EE  RL YVG+TRA 
Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++L +          K+      D + +   N +  
Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640


>gi|300812417|ref|ZP_07092847.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp.
            bulgaricus PB2003/044-T3-4]
 gi|300496584|gb|EFK31676.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp.
            bulgaricus PB2003/044-T3-4]
          Length = 1227

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 151/1014 (14%), Positives = 307/1014 (30%), Gaps = 136/1014 (13%)

Query: 29   SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88
            +D +       +           + +++  T    +R   L +       T + N    +
Sbjct: 244  ADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAAC-QFDGTLRTNKEIAD 302

Query: 89   INKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
              +++ ++KE  K+                 +    K  +   A+  +       + E K
Sbjct: 303  FVEEAKEVKEAGKQLVFNVYTSFYASSNADQQALLAKGAEIASAAAEVELAFIDRFNELK 362

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            + + VLDF D+     ++L +   ++ + R         I++DE QDT+ +Q  +I+ L 
Sbjct: 363  RADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDGLIQRL- 421

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                      +    LF VGD KQSIY F  AEP   + +     +  +        I  
Sbjct: 422  --------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGK---QRIIF 470

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              +FRS+  +   V+ +F           D     + + +           E  V   + 
Sbjct: 471  AENFRSSQPVTQTVNLIFDSLLTKDFGGVDYQKEGQLKFAAGYDPEAALPTETEVLYQED 530

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI---FSNGKKRVIQAKDIL 377
                  +   +  D              +   I  +I   T       G+ R +   DI 
Sbjct: 531  SSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIFGPKTGQTRPVSYGDIA 579

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L R +          +   + Y + +   D         +  +M+  + I + + D+  
Sbjct: 580  ILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPL 635

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCGISKFQHVIKYIHELIHIA 495
            V +L+SP+FNFS  D+ +I                 K      ++ +  +  + +L   +
Sbjct: 636  VAVLRSPIFNFSSSDLAEIRLVNKSVSFYAALRTYAKKDTDLAARCRDFLAQLQDLRDFS 695

Query: 496  QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                  +    I       +   +   G +    L          E + +  L + I+ +
Sbjct: 696  LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755

Query: 555  EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
             +                  N V++MT+H +KGLE P+VF++    +    + I   +++
Sbjct: 756  ARMRKSQKDLAQPILSENADNSVKLMTIHASKGLEFPIVFVLGLEHRYNYQQDITGSYVL 815

Query: 610  PSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK- 666
             +         P    + ++     + L    K+   EE  RLLYV +TRA  +LI+   
Sbjct: 816  DASGLGLSFAYPFDEAEYRADTLANAWLKIAKKQKLLEEEARLLYVALTRAKQKLILAAN 875

Query: 667  ---------------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
                            +   +  +        +          + + K    + +     
Sbjct: 876  IKLPARTDLAGLEEKWAKEISAGRLPLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSD 935

Query: 712  YEWSTH--------HPENTPLEREETIKQLMDEQKIPKKLF----------------SPI 747
                           P+    +  ++         + +                    P 
Sbjct: 936  LAAGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYAFSQGGYPY 995

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQ---------------------------TF 780
             +          S I       +E  L+D+                            + 
Sbjct: 996  LDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFLFQNTVSSA 1055

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLSITRLLENPMMT 838
              G   H +LQ          K+ I S                  L              
Sbjct: 1056 ELGTASHLVLQYYDYAKGD--KDAIDSCIAGLVEKGRLSQTLASKLDREALSWFVKSDFA 1113

Query: 839  TAM---SCDSYSEVSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
                      + E + +            +     I++ G ID    ++  I +F+YKT 
Sbjct: 1114 KDFYQQPDRLHREENFATILSPKTLFKDFSDFPGKILVHGTIDGYYEAENGIILFDYKTD 1173

Query: 887  HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            H  P++ E     +   +  QL +YE+ L +S     L   L+ +S  ++  + 
Sbjct: 1174 HVNPRKQEEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVLLSCREIVEVD 1227


>gi|238926789|ref|ZP_04658549.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei ATCC
            43531]
 gi|238885321|gb|EEQ48959.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei ATCC
            43531]
          Length = 1260

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 146/1004 (14%), Positives = 309/1004 (30%), Gaps = 149/1004 (14%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-----------KS 103
            Q   +   ++ +              +K+I  + I    P+L   LK            +
Sbjct: 276  QLLISGAEDQAWERFR-VDAAAAKKQRKSIPHKSIENYDPELGGALKKKITNIYKAWDAA 334

Query: 104  QDEFIKIRDRFNTYKMFKST--LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
             D+     +     +   +T       LA   +  ++  K +  +LDF DL      LL 
Sbjct: 335  VDQLPATAEELCAAENRANTAIRQYARLALDFHHAFQNEKLERSLLDFSDLEHRALALLC 394

Query: 162  KRDV----------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
            +                I  ++      I++DE QDT+ +Q  ++R +  D         
Sbjct: 395  RHPEQLQDDLNSVDPTDIAEELRAYYAAIMVDEYQDTNGLQEGILRQIAHDD-------- 446

Query: 212  SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
                 F VGD KQSIY F  A+P       R  ++ ++       +I +  +FRS A++L
Sbjct: 447  ---NRFIVGDVKQSIYRFRLADPSLFQHTYRAYRQDSSA----GELITMSENFRSRAEVL 499

Query: 272  TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              ++++FS       +      + R    R          + + S  +        S   
Sbjct: 500  QPINEIFSQIMTESAVEIAYDQSARLNPGRTFDDDPA--GKSLASPLEIDLLDADYSAEE 557

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
              D   + ++ ++ +  IA  I  ++       +G  + ++  DI+VL+R  K+  +I  
Sbjct: 558  ADDEGEELAAFAVESHYIARRIKELVDAGYTVQSG--KALRWSDIVVLLRGAKERAVI-- 613

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   +  I    +D     +   I+ +++L   + +   D     +L SP+   S +
Sbjct: 614  -LMDALREAGIPSYADDTAGYFEASEIRMMLSLLAVLDNARQDTPLTAVLTSPMIGMSME 672

Query: 452  DIFKICTQRHETETVYEYI----QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            ++  +                  ++      +K +  ++ I      A   S  +    +
Sbjct: 673  ELALLRIHTPVGSIYDALKGADAEEVPPAVRNKAKEALQTIRCWRREALLHSVPELLWHL 732

Query: 508  LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561
                       +   G      L   ++     E+ +   L   +  ++         + 
Sbjct: 733  YRTSGYYDYVGALPDGILRQANLRMLIDRAGDFERTNERGLFRFLRYMDALQRRSTDLSA 792

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             R    + + VRIMT+H +KGLE PVVFL +      +      +           +   
Sbjct: 793  ARTLGESEDVVRIMTIHRSKGLEFPVVFLANIAGAFNTQDISGDVLYHAHAGIGVRVYEN 852

Query: 622  I--PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-- 677
                + K        + + +++ T  E  R+LYV MTRA ++LI+     TS    S   
Sbjct: 853  TEIGRQKYDTLGRRSVKEVIRRETIAEEMRILYVAMTRAQEKLILTGTLRTSRSGLSRLA 912

Query: 678  ------------------------QRTWYDMVYDSFHNDERVKKI-KLTNSINKDEWIAY 712
                                       + D +  +       + + +    I   EW   
Sbjct: 913  QLRDFCQQYAREEGETFPDAAILGASCYLDWIALALMRHPDGQALMEGVEGIELREWSDE 972

Query: 713  EWS----------THHPENTPLEREETIKQLMDEQKIPKKLFSPI--------------- 747
            +                       +  +  +   + +   + +P                
Sbjct: 973  KARFAVRIEKADVRTSRSEEERAADAELSAIRSGEPLSPGVRAPYVDSILSWTYDSRGTE 1032

Query: 748  -----------KNDINEPYILNPS--------TIDTKGKTNLESLLSDNQT---FNRGLI 785
                       K +      + PS            + +       +         RG  
Sbjct: 1033 QIHAKTSVTELKRENFPDEEVLPSFAPAVGAGAGGQEWEVPRFLRTAKRAALSPMERGTA 1092

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAM-S 842
            +H L+Q +                +   +    +E    L   ++ R + + +      +
Sbjct: 1093 MHALMQHLDFAEVPDIAAIERQARSLFDQGILTEEAYQSLDVRNVWRFVSSALGRRLREA 1152

Query: 843  CDSYSEVSVSGKINC---------PKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQE 892
               Y E+     +               I + G ID +   +     + +YKT  H+   
Sbjct: 1153 KRVYRELPFGRLLPAKKYYKEAQDEADRIFLQGIIDVLFEEENGDYILLDYKTDRHI--S 1210

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
             +     +  Q+ +Y   ++     + +  C L  +   +   +
Sbjct: 1211 PQDARTRYQFQIDLYCDAVETIL-ERPVKECYLFLLDTGREVRM 1253


>gi|225388061|ref|ZP_03757785.1| hypothetical protein CLOSTASPAR_01795 [Clostridium asparagiforme
           DSM 15981]
 gi|225045862|gb|EEG56108.1| hypothetical protein CLOSTASPAR_01795 [Clostridium asparagiforme
           DSM 15981]
          Length = 851

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 133/858 (15%), Positives = 273/858 (31%), Gaps = 116/858 (13%)

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +  ++ ++   IL+DE QD++ +Q  +I S++ +             +F VGD KQS
Sbjct: 3   PTAVADELARQFEEILVDEYQDSNNVQETLITSISRE-------RWGKPNVFMVGDVKQS 55

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY F  A P+  + +          +      IEL  +FRS A +L  V+ VF       
Sbjct: 56  IYRFRLARPELFMDKYERYSV----SESLHQKIELHQNFRSRATVLDSVNDVFYKIMTRA 111

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 T             G        +   D+  +  ++      D     ++  + 
Sbjct: 112 LGGIRYTEETALHPGAQFAPGERTGTPTELLLVDTGADALKQLDEEAMDY----TAKELE 167

Query: 346 ARRIAYTISNMIGTD-----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           AR +A  I  ++  +           + R ++  D+++L+R          +   +  + 
Sbjct: 168 ARMVAIRIRELMDPENGLMVWDKGAEEYRPVRLGDMVILLRSLSGWS---EVFVNVLMNE 224

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC--- 457
            I      +    + + ++ +++L   + +   D+    ++KSP+ + +++++  +    
Sbjct: 225 GIPAYAQTKTGYFNTVEVETVLSLLAVVDNPMQDIPLAAVMKSPMVSMTDEEMAWMMAAY 284

Query: 458 -----------------TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                              +       +  ++       K   +   +  L   A++   
Sbjct: 285 KRTPEKGQDRGVYGAFMHWKENGGEGVDAPEEAVEAIGEKLACLETLLEGLRRDARYLPV 344

Query: 501 HDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-- 557
           H        A            G      LD  +   +  E  SY  L   I  +E+   
Sbjct: 345 HQLLYRAFEAGGYYDYVSAMPAGETRRANLDMLVEKAIAYEATSYKGLFHFIRYIEKLKK 404

Query: 558 ---PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                          + VRIM++H +KGLE PVVFL   G +         + +   L  
Sbjct: 405 YDTDFGEANVAGEQADTVRIMSIHKSKGLEFPVVFLAGMGKRFNKQDAYGAVLLDADLGL 464

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                    + K        L + ++  +  E  R+LYV MTRA ++LI+     +   K
Sbjct: 465 AADYLDLKQRLKMPTLKKQALKRRMELESMGEELRVLYVAMTRAKEKLIMTATDRSLGSK 524

Query: 675 ------------------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
                              +   ++ D +  S  +    K+      +   E        
Sbjct: 525 MEKWAQVPLADGAIPYTILAAAGSFLDWLLMSACDGTIRKRQIPLTGLVGMEIRRQASRQ 584

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKL--FSPIKNDINEPYILNPSTID----------- 763
              E       +T+      +++   L    P   D     +L+ S +            
Sbjct: 585 VSREELLTLDTDTVYDPEAARQLADALNYRYPYGGDTGLYAMLSVSELKKQGQVGQDEEE 644

Query: 764 --------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                               T G        +      RG   H+ L+ +     H R++
Sbjct: 645 IGRGRILGGGEEARILGDVWTDGAGEGGPERAGAVGAARGTAYHRALECLDLGKLHSRED 704

Query: 804 FITSYCTKNAKLWPAKEYKNLLLS--ITRLLENPMMTTAMSCDS----YSEVSVSGKINC 857
              +  +     +  +E  + L    I  +L +P+             + E      I  
Sbjct: 705 VRAALKSLLETGYLEREAYDALDEMVIFTMLNSPLGQRMAEAQRDGRLHREQQFIIGIPA 764

Query: 858 PKKD-------IIISGRIDQISISQQNIFIFEYKTHHHVPQEI--EHIPYTHIAQLSIYE 908
            +         +++ G ID     +  + + +YKT          E +   +  Q++ Y+
Sbjct: 765 REMGRGDSQELVLVQGVIDAYLEEEDGLVLIDYKTDRVPGGRAGRECLAERYRQQVAYYQ 824

Query: 909 KILKDSYPNKSLVCLLIY 926
           + L+     K +   +IY
Sbjct: 825 RALEQL-TGKKVKENIIY 841


>gi|18311242|ref|NP_563176.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens str. 13]
 gi|18145925|dbj|BAB81966.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
          Length = 751

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 104/576 (18%), Positives = 200/576 (34%), Gaps = 115/576 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K+N  LDF+DLI+ T +L +K +    +      +  +I+IDE QDT+ 
Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E  + L              + +  VGD+ Q IY++ GA+ + +L  ++   +    
Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS  +IL   +KV       +                         
Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +     +     +Y D         + A  +   I  +              
Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KNDNG 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KD  VL R    +       R       I           D   IKD++A  + I++
Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483
            +D +S   ++  P  +  +  + K+        +T+Y      +Y+       I+  + 
Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540
               + E++ +++  S       +L      +             I+ L+E ++  +  E
Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519

Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +++    + L + LE+           A  N V +MTVH++KGLE P VFLV   + +F 
Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                                         +  EE  RL YVG+TRA 
Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++L +          K+      D + +   N +  
Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640


>gi|188588674|ref|YP_001919827.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498955|gb|ACD52091.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 749

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 111/625 (17%), Positives = 221/625 (35%), Gaps = 127/625 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K+I  QEI  K    K+ ++ +Q    +    F   K+ ++              Y+   
Sbjct: 132 KDISDQEILSKIGKAKDTMQTAQSFMRQNESNFREKKIAEA-----------YEMYQRRL 180

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K+N  LDF+DLI    +L K       +      +  +I++DE QDT+  Q+E+I+ L  
Sbjct: 181 KENNALDFDDLIFKAVELFKSNPE---VLDFYQNKFKYIMVDEYQDTNGAQYELIKLLAS 237

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +          + +  VGD+ Q IY + GA+ + +L  ++              +I+L 
Sbjct: 238 KY----------KNICVVGDDDQCIYQWRGADIQNILDFEKDYPN--------AKVIKLE 279

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS ++IL   + V     N +                               + + +
Sbjct: 280 QNYRSKSNILNAANVVIVNNANRKSKVL---------------------------RTEQE 312

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + + + ++ DS   +         ++  I+ +   +           + KD  +L R
Sbjct: 313 AGDKIKIYRAFSDSDEGD--------FVSKQIAEIKSKENK---------EYKDFAILYR 355

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + +     R       I           D   IKD++A  + I++  DD+S   ++
Sbjct: 356 TNAQSRIFEESLR----RRGIPYKIVGGTRFYDRKEIKDILAYLKAIVNPRDDVSLKRII 411

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494
             P  +  +  + KI          +++ + +            +  +     + E + +
Sbjct: 412 NVPKRSIGDATVSKIQEFANSFELDMWDALMEVRTIPTLTPRNANNIEVFTNLMEEFMSL 471

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELI 551
           ++          IL      +Q  +    E    I+ L E ++  +  E+N+    + L 
Sbjct: 472 SETAPISILIESILKDTGYLKQLEASKEIEDKSRIENLKELVSDAVDFEKNNED--KSLA 529

Query: 552 SELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + LE+              + + +MTVH+AKGLE PVVF+V   + +F            
Sbjct: 530 AYLEKVSLVQDTDKIEEQEDTIVLMTVHSAKGLEFPVVFMVGMENGIFPGNMSF------ 583

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                        K+S  EE  RL YVG+TRA + L +      
Sbjct: 584 ----------------------------EKESEMEESRRLCYVGITRAKETLFMTSAEVR 615

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERV 695
               ++   +  D + +   + +  
Sbjct: 616 RVFGRTVAYSQSDFINEIKPDLKEY 640


>gi|251778648|ref|ZP_04821568.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243082963|gb|EES48853.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 749

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 111/625 (17%), Positives = 221/625 (35%), Gaps = 127/625 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K+I  QEI  K    K+ ++ +Q    +    F   K+ ++              Y+   
Sbjct: 132 KDISDQEILSKIGKAKDTMQTAQSFMRQNESNFREKKIAEA-----------YEMYQRRL 180

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K+N  LDF+DLI    +L K       +      +  +I++DE QDT+  Q+E+I+ L  
Sbjct: 181 KENNALDFDDLIFKAVELFKSNPE---VLDFYQNKFKYIMVDEYQDTNGAQYELIKLLAS 237

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +          + +  VGD+ Q IY + GA+ + +L  ++              +I+L 
Sbjct: 238 KY----------KNICVVGDDDQCIYQWRGADIQNILDFEKDYPN--------AKVIKLE 279

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS ++IL   + V     N +                               + + +
Sbjct: 280 QNYRSKSNILNAANVVIINNANRKSKVL---------------------------RTEQE 312

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + + + ++ DS   +         ++  I+ +   +           + KD  +L R
Sbjct: 313 AGDKIKIYRAFSDSDEGD--------FVSKQIAEIKSKENK---------EYKDFAILYR 355

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + +     R       I           D   IKD++A  + I++  DD+S   ++
Sbjct: 356 TNAQSRIFEESLR----RRGIPYKIVGGTRFYDRKEIKDILAYLKAIVNPRDDVSLKRII 411

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494
             P  +  +  + KI          +++ + +            +  +     + E + +
Sbjct: 412 NVPKRSIGDATVSKIQEFANSFELDMWDALMEVRTIPTLTPRNANNIEVFTNLMEEFMSL 471

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELI 551
           ++          IL      +Q  +    E    I+ L E ++  +  E+N+    + L 
Sbjct: 472 SETAPISVLIEAILKDTGYLKQLEASKEIEDKSRIENLKELVSDAVDFEKNNED--KSLA 529

Query: 552 SELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + LE+              + + +MTVH+AKGLE PVVF+V   + +F            
Sbjct: 530 AYLEKVSLVQDTDKIEEQEDTIVLMTVHSAKGLEFPVVFMVGMENGIFPGNMSF------ 583

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                        K+S  EE  RL YVG+TRA + L +      
Sbjct: 584 ----------------------------EKESEMEESRRLCYVGITRAKETLFMTSAEVR 615

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERV 695
               ++   +  D + +   + +  
Sbjct: 616 RVFGRTVAYSQSDFINEIKPDLKEY 640


>gi|257440573|ref|ZP_05616328.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii
            A2-165]
 gi|257196896|gb|EEU95180.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii
            A2-165]
          Length = 1233

 Score =  326 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 152/1043 (14%), Positives = 297/1043 (28%), Gaps = 148/1043 (14%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +        +  + +  D          +  K   L   T     L KA  L    +   
Sbjct: 229  RAALADCPGDREQEL-ADAEEKKTPSAREKAKNAVLEKYTDAQERLDKAAALLGRVEQLA 287

Query: 62   IEERFSLLSSFF------------LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
            +   ++ L                L            + I  ++ +      +  +    
Sbjct: 288  VAGEWTPLYDLLTPYVLGMEELPGLKGMKKRLNGEHKKVIRTRADEGAALFAQILELIPC 347

Query: 110  IRDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
              +     +        A     +  +A +   K+   +L+F D       LL+ +D   
Sbjct: 348  SEEEAEADRRAAEPRLRALFAAVRDFDARFSAKKRDRKLLEFSDFEHQALHLLRDQDGPP 407

Query: 168  WIRYK-IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                  I Q    +++DE QDT+ +Q  + R L            +   LF VGD KQSI
Sbjct: 408  TALCGVIRQNYAAVMVDEYQDTNALQDALYRCLAS---------PAGDDLFLVGDLKQSI 458

Query: 227  YSFHGAEPKRVLREKRINQKR---------ATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            Y F  A+P     +                A       +++ L  +FRS   ++  ++ +
Sbjct: 459  YRFRQADPSIFREKLDSWPALPGGAARPRPAEGTPGTDAMLALDANFRSAPQVVEGINFL 518

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            F    + +          R      G                 +     E+     D+  
Sbjct: 519  FERLMSPELGDTAYGDGQRLICGAPG-----------------EYTGSVEAHFLPDDTAE 561

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFL 396
             +      A  IA  I  ++ +     +G   R +Q +D  +L+  R D P         
Sbjct: 562  TD------AGWIARRIEELVQSGEPVRDGSATRPVQYEDCCILLAARIDFPAYVEALTA- 614

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 I V  + R  L D   I+ L+AL + I +   D+     +  PLF F++DD+ ++
Sbjct: 615  ---RGIPVYADARENLLDAPHIRPLIALLKVIDNPAQDIYLAAAMLGPLFGFTDDDLVRL 671

Query: 457  CTQRHE----------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
              +  E                   +             K +     + EL  +A+    
Sbjct: 672  RARAEEIQKQQGENAPQRISLYGALLLTVNSGEDTPFTGKVRAFYARLTELRRMARSVPA 731

Query: 501  HDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE--LISELEQY 557
                  I  +        +   G    +    F +F         S+L      + L   
Sbjct: 732  EQLLEEIFASTGYLAALGVMENGARRREDARRFASFCAGAGSGGISALVRAIDAAALAGS 791

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                     +    V +MT+H +KGL+ PVVF+ DT  +  +    + + +         
Sbjct: 792  TGQDTVPGGSRPGCVTVMTIHRSKGLQFPVVFVADTARRFNAADTRQPVLLHRMYGAGLR 851

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
            +     +   +    + L        + E  RLLYV +TRA D+LI+             
Sbjct: 852  LRPEEGEGAYKTAAYTALSNVHAAEMRSEQMRLLYVALTRAQDKLILTVPLGIGKTSNPF 911

Query: 678  ------------------QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY------- 712
                                ++ D +  +         ++      +  +          
Sbjct: 912  TRAAAFLEAGAGQTLCRQANSFADWLRAALLVHPNGGPLRRLAEDLELPFADTGSTITLT 971

Query: 713  -------EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                         PE       +    L +  +       P       P  ++ + I  K
Sbjct: 972  VQQALPEGVEPPDPEPEERPLAQADPALTEALRQGFAWQYPAAELARVPAKVSVTGIVHK 1031

Query: 766  G-----KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF--------ITSYCTKN 812
                  +               G  +H  L+          K                  
Sbjct: 1032 AEQTTLERPGFLAKDGLTAAEMGTALHAFLEHADFAALAAAKQAGTLETAIPAERDRQVE 1091

Query: 813  AKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPK----------- 859
            AKL   +  + L    I R +E+       + D    E+     +   +           
Sbjct: 1092 AKLTAPEIAEKLDAGRIRRFVESEAFARICAADEVLRELDFITALPAAEVLTAQGTDSAD 1151

Query: 860  ------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                    +++ G  D + +   ++ + +YKT     +  +     + AQL +Y   +  
Sbjct: 1152 SAAVAQAKVLVQGIADLVLVFPNHLELLDYKTDRR--KSEDDFLAAYRAQLDLYALAISK 1209

Query: 914  SYPNKSLV-CLLIYVSEPKVFII 935
             +  K +    +  +   K+  +
Sbjct: 1210 RFAPKPVTYKGIYSLELGKLIEV 1232


>gi|182625530|ref|ZP_02953301.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str.
           JGS1721]
 gi|177909218|gb|EDT71683.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str.
           JGS1721]
          Length = 751

 Score =  326 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 104/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K+N  LDF+DLI+ T +L +K +    +      +  +I+IDE QDT+ 
Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E  + L              + +  VGD+ Q IY++ GA+ + +L  ++   +    
Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS  +IL   +KV       +                         
Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +     +     +Y D         + A  +   I  +            + 
Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEASFVVSEIEKL---------KSDKG 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KD  VL R    +       R       I           D   IKD++A  + I++
Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483
            +D +S   ++  P  +  +  + K+        +T+Y      +Y+       I+  + 
Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540
               + E++ +++  S       +L      +             I+ L+E ++  +  E
Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519

Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +++    + L + LE+           A  N V +MTVH++KGLE P VFLV   + +F 
Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                                         +  EE  RL YVG+TRA 
Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++L +          K+      D + +   N +  
Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640


>gi|187935645|ref|YP_001884643.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B]
 gi|187723798|gb|ACD25019.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B]
          Length = 750

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 113/615 (18%), Positives = 222/615 (36%), Gaps = 127/615 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K+I  QEI  K    K+ ++ +Q   I+    F   K+ ++              Y+   
Sbjct: 132 KDISDQEILSKIGKAKDTMQTAQSFMIQNESNFREKKIAEA-----------YEMYQRRL 180

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K+N  LDF+DLI    +L K       +      +  +I++DE QDT+  Q+E+I+ L  
Sbjct: 181 KENNALDFDDLIFKAVELFKSNPE---VLDFYQNKFKYIMVDEYQDTNGAQYELIKLLAS 237

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +          + +  VGD+ Q IY + GA+ + +L  ++   K          +I+L 
Sbjct: 238 KY----------KNICVVGDDDQCIYQWRGADIQNILDFEKDYPK--------AKVIKLE 279

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS ++IL   + V     N +                               + + +
Sbjct: 280 QNYRSKSNILNAANVVIVNNANRKSKVL---------------------------RTEQE 312

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + + + ++ DS   +         ++  I+ +   +           + KD  +L R
Sbjct: 313 AGDKIKIYRAFSDSDEGD--------FVSKQIAEIKSKENK---------EYKDFAILYR 355

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + +     R       I           D   IKD++A  + I++  DD+S   ++
Sbjct: 356 TNAQSRIFEESLR----RRGIPYKIIGGTRFYDRKEIKDVLAYLKAIVNPRDDVSLKRII 411

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494
             P  +  +  + KI     +    +++ + +            +  +     + E + +
Sbjct: 412 NVPKRSIGDATVSKIQEFANNFELDMWDALMEVRTIPTLTPRNANNIEAFTNLMEEFMSL 471

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELI 551
           ++          IL   +  +Q  +    E    I+ L E ++  +  E+N+    + L 
Sbjct: 472 SETAPISVLIEAILKETEYLKQLEASKEIEDKSRIENLKELVSDAVDFEKNNED--KSLA 529

Query: 552 SELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + LE+              + + +MTVH+AKGLE PVVF+V   + +F            
Sbjct: 530 AYLEKVSLVQDTDKIEEQEDTIVLMTVHSAKGLEFPVVFMVGMENGIFPGNMSF------ 583

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                        K+S  EE  RL YVG+TRA + L +      
Sbjct: 584 ----------------------------EKESEMEESRRLCYVGITRAKETLFMTSAEVR 615

Query: 671 SNEKKSNQRTWYDMV 685
               ++   +  D +
Sbjct: 616 RVFGRTVAYSQSDFI 630


>gi|329117216|ref|ZP_08245933.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD 2020]
 gi|326907621|gb|EGE54535.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD 2020]
          Length = 1212

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 148/923 (16%), Positives = 293/923 (31%), Gaps = 130/923 (14%)

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLI 153
            +  K+       +R      +    ++  L L K      +  Y + KK     +F D+ 
Sbjct: 327  QVYKQINASLRNLRHLDTIIQYQAESIPLLILLKNFVVDFSNAYLDRKKIENAFEFSDIA 386

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
                 LL+       IR     + + +++DE QD + +Q  ++  L+             
Sbjct: 387  HFAIALLETYPE---IRQLYQDKYHEVMVDEYQDNNHMQERLLDLLSS-----------G 432

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
               F VGD KQSIY F  A+P+    + +  Q+          +I L  +FRS +++L V
Sbjct: 433  HNRFMVGDIKQSIYRFRQADPQIFNSKFKAYQEDPNQ----GKLILLKENFRSQSEVLDV 488

Query: 274  VDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
             + +F+   +     +  D    +   S++  ++ T    +  +   D   NP+ +S + 
Sbjct: 489  TNAIFTHLMDEEIGDILYDDNHRLIPGSAKQRELKTSNQAQVWIYDTDETSNPEPDSESD 548

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
              +  P +         +A  I  +   +          +   +I +LV  R        
Sbjct: 549  NDNLSPGQVKI------VAKEIIRLHQEE---------AVPFSEITLLVSSRTR----ND 589

Query: 392  LTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                  N Y I  V    +      + +  ++   R I +  +D + V +++SP+FNF E
Sbjct: 590  SIFQTFNQYGIPLVADGGQENYLKSVEVMVMLETLRSINNPYNDYALVALMRSPMFNFDE 649

Query: 451  DDIFKICTQRHETETVYEYIQKF--------------ANCGISKFQHVIKYIHELIHIAQ 496
            D + +I  Q  +T+ +  Y +K                     K    + Y+ +    +Q
Sbjct: 650  DQLARIALQTSQTQKLDSYYEKLKLAKSGQGQQRQLITTELAEKIGKFLSYLSQWRTYSQ 709

Query: 497  FCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
              S +     I   +             +    L        + E+  +  L   I  ++
Sbjct: 710  KQSLYSLIWKIYNDRFYFDFVGTLPKAEQAQANLYALALRAQQFEKTGFKGLTRFIGMID 769

Query: 556  ----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                          +   + V IMT+H +KGLE   VF+++   +         M +   
Sbjct: 770  KILNSQNDLADVDVAKPKDAVSIMTIHKSKGLEFQYVFILNCDKKFALKDIHSPMILSRH 829

Query: 612  LNDDPGIP-----------IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                               +   +            + L  +T  E  RL YV MTRA  
Sbjct: 830  RGAGIKFLADLKDKLQANQLASLKVYLETIPYQMNRQELIFATLSEQMRLFYVAMTRAEK 889

Query: 661  QLIICKHSNTSN----------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            +L +    +                     + + +++ + +                  I
Sbjct: 890  KLYLIGKGSQKKLVDKFDGQKEGNHLPKALRESMQSFQEWILAIQAAFPLKDLHFNLAYI 949

Query: 705  NKDEWIAYE-------WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
            +  +    E        S          + + I + +D     ++L       I  P + 
Sbjct: 950  DDSQLTDQEIGHLENKHSLDPDNLQNNRQTDEIARAIDMLDKVQELNQTYHAAITLPTVR 1009

Query: 758  NPSTIDTKGKT----------------------NLESLLSDNQTFNRGLIIHKLLQVIFT 795
             PS I    +                          S        + G  +H+L+Q I  
Sbjct: 1010 TPSQIKKFYEPIMPSEGIDIISKTPFLPAEIVLPDFSKEKTVLASDIGSAMHELMQRIPI 1069

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS---CDSYSEVSV 851
                   +       K       +    L L  +    E+  +   +       Y E   
Sbjct: 1070 SDSLSLDDVEE---AKRLIDASEEVKAALNLNMVFDFFEHTELGQMLQRNKERLYREAPF 1126

Query: 852  SG--KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
            +     N   +  ++ G ID        I +F+YKT  +  +    I + +  Q+ +Y +
Sbjct: 1127 AMLKMDNASHEKFVVRGIIDGFLRFDDRIILFDYKTDKY--KNPLDIGHRYQDQMELYAE 1184

Query: 910  ILKDSYPNKSLVCLLIYVSEPKV 932
             L+ +Y    +   L+ +   KV
Sbjct: 1185 ALQKAYGIHKIEKHLVLLGGKKV 1207


>gi|251782155|ref|YP_002996457.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|242390784|dbj|BAH81243.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
          Length = 1210

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 155/1011 (15%), Positives = 301/1011 (29%), Gaps = 129/1011 (12%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
              +  +L+   +           +      +        K  + L    +       F  
Sbjct: 237  PEQEIQLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLAMIEKLYEWARDFPH 296

Query: 69   L--SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L                + T              K    + I+ R           +L  
Sbjct: 297  LYGRQGLSQLAKDLTALLPTGNDVTVVGIKYPVFKSLHQKLIRFRHLETILSYQPESLPL 356

Query: 127  LT----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            L     +    +  Y +AKK+    +F D+      +L++      IR     + + +++
Sbjct: 357  LELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPD---IRQTYQDQYHEVMV 413

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+P+   ++ +
Sbjct: 414  DEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              Q           +I L  +FRS  ++L   + VF+   +            +  +  +
Sbjct: 463  DYQTYPEQ----GKLILLKENFRSQTEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSV 518

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
            GQ       +    +H ++            D    +  +      +A  I  +      
Sbjct: 519  GQ-------KIASPEHRAKLLLYNTDHEDQLDIEDADDISPSEVTIVAKEIIRLHNEQH- 570

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421
                    +  +DI +LV  R              N Y I  V    +      + +  +
Sbjct: 571  --------VPFEDITLLVSSRT----RNDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVM 618

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-- 479
            +   R I +  +D + V +L+SP+F F ED++ ++  Q+ + +       K     +   
Sbjct: 619  LDTLRTINNPRNDYALVALLRSPMFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTG 678

Query: 480  ------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVI 526
                        K    I+ +      A+  S +D    I   +             +  
Sbjct: 679  THPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFNDRFYFDFVGSQAKAEQAQ 738

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              L        + EQ+ Y  L   I      LE          +++   V +MT+H +KG
Sbjct: 739  ANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASSKQAVNLMTIHKSKG 798

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNI 631
            LE   VFL++   +           +                      +   +       
Sbjct: 799  LEFKYVFLLNCDKRFAMTDVHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLP 858

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT--------SNEKKSNQRTWYD 683
                 + L+ +T  E  RLLYV MTRA  Q+ +   ++              ++      
Sbjct: 859  YQLNKQELRLATLSEQMRLLYVAMTRAEKQIYLIGKASKEKSQEFTDGKRSGNHLPLALR 918

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT---------------PLEREE 728
                SF +         T      +    E S   PE                    +  
Sbjct: 919  ERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQSQQLLQPDDLKDNRQSA 978

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768
             I + +D      +L    +  I+ P +  PS +    +                     
Sbjct: 979  DITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNAF 1038

Query: 769  --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                 S     +    G  +H+L+Q I             +     A+          L 
Sbjct: 1039 TLPEFSKQVKVEASQVGSALHRLMQAIPLTKPISLATIAQALEEIEAEAVVKAALD--LQ 1096

Query: 827  SITRLLENPMMTTAM---SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIF 881
             + +      +       S + Y E   +   K    ++D +I G ID   + + +I + 
Sbjct: 1097 KVEQFFTETALGKRFQTYSTNLYREAPFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELI 1156

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            +YKT  +  +    +   +  QL +Y + L  +Y        L+ +   ++
Sbjct: 1157 DYKTDRY--RHPSDLKTRYQQQLELYAEALSQTYGLPVTKKYLVLMGGSEL 1205


>gi|323127008|gb|ADX24305.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp.
            equisimilis ATCC 12394]
          Length = 1210

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 155/1011 (15%), Positives = 302/1011 (29%), Gaps = 129/1011 (12%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
              +  +L+   +           +      +        K  + L    +       F  
Sbjct: 237  PEQEIQLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLAMIEKLYEWARDFPH 296

Query: 69   L--SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L                + T      +       K    + I+ R           +L  
Sbjct: 297  LYGRQGLSQLAKDLTALLPTGNDVTVAGIKYPVFKSLHQKLIRFRHLETILSYQPESLPL 356

Query: 127  LT----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            L     +    +  Y +AKK+    +F D+      +L++      IR     + + +++
Sbjct: 357  LELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPD---IRQTYQDQYHEVMV 413

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+P+   ++ +
Sbjct: 414  DEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQKFK 462

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              Q           +I L  +FRS  ++L   + VF+   +            +  +  +
Sbjct: 463  DYQTYPEQ----GKLILLKENFRSQTEVLEASNAVFTHLMDESLGDILYDEQHQLVAGSV 518

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
            GQ       +    +H ++            D    +  +      +A  I  +      
Sbjct: 519  GQ-------KIASPEHRAKLLLYNTDHEDQLDIEDADGISPSEVTIVAKEIIRLHNEQH- 570

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDL 421
                    +  +DI +LV  R              N Y I  V    +      + +  +
Sbjct: 571  --------VPFEDITLLVSSRTR----NDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVM 618

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-- 479
            +   R I +  +D + V +L+SP+F F ED++ ++  Q+ + +       K     +   
Sbjct: 619  LDTLRTINNPRNDYALVALLRSPMFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTG 678

Query: 480  ------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVI 526
                        K    I+ +      A+  S +D    I   +             +  
Sbjct: 679  THPELVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFNDRFYFDFVGSQAKAEQAQ 738

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              L        + EQ+ Y  L   I      LE          +++   V +MT+H +KG
Sbjct: 739  ANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASSKQAVNLMTIHKSKG 798

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNI 631
            LE   VFL++   +           +                      +   +       
Sbjct: 799  LEFKYVFLLNCDKRFAMTDIHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLP 858

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT--------SNEKKSNQRTWYD 683
                 + L+ +T  E  RLLYV MTRA  Q+ +   ++              ++      
Sbjct: 859  YQLNKQELRLATLSEQMRLLYVAMTRAEKQIYLIGKASKEKSQEFTDGKRSGNHLPLALR 918

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT---------------PLEREE 728
                SF +         T      +    E S   PE                    +  
Sbjct: 919  ERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQSQQLLQPDDLKDNRQSA 978

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------- 768
             I + +D      +L    +  I+ P +  PS +    +                     
Sbjct: 979  DITRAIDMLNKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNAF 1038

Query: 769  --NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                 S     +    G  +H+L+Q I             +     A+          L 
Sbjct: 1039 TLPEFSKQVKVEASQVGSALHRLMQAIPLTKPISLATIAQALEEIEAEAVVKAALD--LQ 1096

Query: 827  SITRLLENPMMTTAM---SCDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIF 881
             + +      +       S + Y E   +   K    ++D +I G ID   + + +I + 
Sbjct: 1097 KVEQFFTETALGKRFQTYSTNLYREAPFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELI 1156

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            +YKT  +  +    +   +  QL +Y + L  +Y        L+ +   ++
Sbjct: 1157 DYKTDRY--RHPSDLKTRYQQQLELYAEALSQTYGLPVTKKYLVLMGGSEL 1205


>gi|149183792|ref|ZP_01862193.1| PcrA [Bacillus sp. SG-1]
 gi|148848495|gb|EDL62744.1| PcrA [Bacillus sp. SG-1]
          Length = 705

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 110/631 (17%), Positives = 210/631 (33%), Gaps = 114/631 (18%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   +   Y++  +KN  LDF+DLI+ T  L ++      +     ++  +I +DE QDT
Sbjct: 136 VISDVYEEYQKRLRKNQALDFDDLIMTTIQLFQR---VPEVLEFYQRKFQYIHVDEYQDT 192

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ +++ +   F          + L  VGD  QSIY + GA+   +L  ++   +  
Sbjct: 193 NRAQYMLVKMMASRF----------QNLCVVGDSDQSIYRWRGADIANILSFEKDYPR-- 240

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  ++I L  ++RST  IL   + V     N +  +                    
Sbjct: 241 ------ANVILLEQNYRSTKTILHAANDVIQKNSNRKPKN-------------------- 274

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW             ++ ++        +  S    A+ +A  I  M  +         
Sbjct: 275 -LW-------TENKQGEKITYY-------RGDSEQSEAQFVAGKIKEMTDSGKR------ 313

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              +  D  +L R    + ++  +         I           D   IKD++A  R I
Sbjct: 314 ---KFSDFAILYRTNAQSRVMEEIL----LKSNIEYSIVGGVKFYDRKEIKDILAYLRLI 366

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK-----FANCGISKFQ 482
            + +DD+S   ++  P        + KI         ++ + +++      +        
Sbjct: 367 SNPDDDISLRRVINVPKRGIGSTSLDKIANYAAMNDLSMMQALEEADFIGLSPKITKSVI 426

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539
                +     + ++ S  +    IL     R+   +    E     + +DEFL+ T   
Sbjct: 427 EFKDLVKGYTQMQEYLSVTELVEEILEKSGYREMLKAEKSIEAQSRLENIDEFLSVTKSF 486

Query: 540 EQ-NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           E  N   SL   +++L       K        + V +MT+H AKGLE PVVFL+     V
Sbjct: 487 EDTNDDKSLVAFLTDLALVADIDKLDDDEQPTDAVILMTLHAAKGLEFPVVFLMGLEEGV 546

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H                                      + +   EE  RL YVG+TR
Sbjct: 547 FPHSRSL----------------------------------MDEEEMEEERRLAYVGITR 572

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A ++L +      +   ++        + +   +     + +  +  +         +  
Sbjct: 573 AEEELYMTNAQMRTLYGQTKMNPVSRFIAEIPEDLIDNFEPEKRSPFSSGGKTTASRTQQ 632

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                P+ R        +         +  K
Sbjct: 633 PVRRKPVSRPVPTTTGGEGISWQVGDRAAHK 663


>gi|237666682|ref|ZP_04526667.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237657881|gb|EEP55436.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 757

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 114/648 (17%), Positives = 234/648 (36%), Gaps = 122/648 (18%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           L ++     NI  ++I+++  ++  K+ K++D     R      +              +
Sbjct: 120 LVKECMKTVNINDKDISEQ--EIISKIGKAKDRMQTARSFKLENESNFRENKI----ADV 173

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y++  K+N  LDF+DLI  T +L K    +        ++  +I++DE QDT+  Q+
Sbjct: 174 YEMYQKRLKENNALDFDDLIFKTVELFKSNPET---LEFYQRKFKYIMVDEYQDTNGAQY 230

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+++ L   +          + +  VGD+ Q IY + GA+ K +L  ++           
Sbjct: 231 ELVKLLASKY----------KNICVVGDDDQCIYQWRGADIKNILDFEKDYP-------- 272

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +I+L  ++RS  +IL   + V     N +  +                         
Sbjct: 273 DAKVIKLEQNYRSKGNILNAANVVIVNNSNRKSKAL------------------------ 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + + +   + + + +Y DS   +         +   I ++   +           + 
Sbjct: 309 ---RTEQELGSKIKVYRAYSDSDEGD--------FVGKQILDIRKNEDK---------KY 348

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            D  +L R    + +     R       I           D   IKD++A  + +++ +D
Sbjct: 349 NDFAILYRTNAQSRIFEESFR----RKGIPYKIVGGTRFYDRKEIKDILAYLKVLINPQD 404

Query: 434 DLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIK 486
           D+S   ++  P  +  +  + KI          +++ + +           +S     ++
Sbjct: 405 DISIRRIINVPKRSIGDATVNKIQDFADSFELNMWDALSEVRSIPTLTPRNVSCIDPFVQ 464

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-N 542
            +  L+ +++          IL       Q       E    I+ L E ++  +  E+ +
Sbjct: 465 LMENLMILSETTPVSMLIETILEDTGYMDQLKKSNEIEDKSRIENLKELVSDAVDFEKNS 524

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              SL   + ++     T K       + V +MTVH+AKGLE PVVF+V   + +F    
Sbjct: 525 EDKSLSAYLEKVSLVQDTDKIEDE--DDSVVLMTVHSAKGLEFPVVFMVGMENGIFPGSA 582

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                K+S  EE  RL YVG+TRA + L
Sbjct: 583 SF----------------------------------EKESEMEESRRLCYVGITRAKEIL 608

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            +          K+   +  D + +   + +    ++ T   +++ +I
Sbjct: 609 FMTSAEVRRVFGKTVAYSQSDFINEIKPDLKEYVSVEKTGIKSRESFI 656


>gi|182419338|ref|ZP_02950590.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521]
 gi|182376669|gb|EDT74241.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521]
          Length = 757

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 114/648 (17%), Positives = 234/648 (36%), Gaps = 122/648 (18%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           L ++     NI  ++I+++  ++  K+ K++D     R      +              +
Sbjct: 120 LVKECMKTVNINDKDISEQ--EIISKIGKAKDRMQTARSFKLENESNFRENKI----ADV 173

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y++  K+N  LDF+DLI  T +L K    +        ++  +I++DE QDT+  Q+
Sbjct: 174 YEMYQKRLKENNALDFDDLIFKTVELFKSNPET---LEFYQRKFKYIMVDEYQDTNGAQY 230

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+++ L   +          + +  VGD+ Q IY + GA+ K +L  ++           
Sbjct: 231 ELVKLLASKY----------KNICVVGDDDQCIYQWRGADIKNILDFEKDYP-------- 272

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +I+L  ++RS  +IL   + V     N +  +                         
Sbjct: 273 DAKVIKLEQNYRSKGNILNAANVVIVNNSNRKSKAL------------------------ 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + + +   + + + +Y DS   +         +   I ++   +           + 
Sbjct: 309 ---RTEQELGSKIKVYRAYSDSDEGD--------FVGKQILDIRKNEDK---------KY 348

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            D  +L R    + +     R       I           D   IKD++A  + +++ +D
Sbjct: 349 NDFAILYRTNAQSRIFEESFR----RKGIPYKIVGGTRFYDRKEIKDILAYLKVLINPQD 404

Query: 434 DLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIK 486
           D+S   ++  P  +  +  + KI          +++ + +           +S     ++
Sbjct: 405 DISIRRIINVPKRSIGDATVNKIQDFADSFELNMWDALSEVRSIPTLTPRNVSCIDPFVQ 464

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-N 542
            +  L+ +++          IL       Q       E    I+ L E ++  +  E+ +
Sbjct: 465 LMENLMILSETTPVSMLIETILEDTGYMDQLKKSNEIEDKSRIENLKELVSDAVDFEKNS 524

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              SL   + ++     T K       + V +MTVH+AKGLE PVVF+V   + +F    
Sbjct: 525 EDKSLSAYLEKVSLVQDTDKIEDE--DDSVVLMTVHSAKGLEFPVVFMVGMENGIFPGSA 582

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                K+S  EE  RL YVG+TRA + L
Sbjct: 583 SF----------------------------------EKESEMEESRRLCYVGITRAKEIL 608

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            +          K+   +  D + +   + +    ++ T   +++ +I
Sbjct: 609 FMTSAEVRRVFGKTVAYSQSDFINEIKPDLKEYVSVEKTGIKSRESFI 656


>gi|309782347|ref|ZP_07677073.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA]
 gi|308918883|gb|EFP64554.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA]
          Length = 1173

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 161/964 (16%), Positives = 320/964 (33%), Gaps = 90/964 (9%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
              +  D+  +  +         +             A      S      + F  L + F
Sbjct: 247  AALLADMLRVSGWLG---QGGAAEGKRAVAIESAVTAARGMDVSDEAARAQAFEALFAAF 303

Query: 74   LTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             TQ    +    T+ + K   D     L        +     + R     +     A   
Sbjct: 304  HTQAGKARACKPTKALIKAIGDEHAQTLVTLHTTLCETLTAFQARRQEACVRAVNAALFA 363

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            L   L   Y+  K++   +DF DL      L+++ D +A+++ ++D    H+L+DE QDT
Sbjct: 364  LGDALIDRYQAYKRQARAMDFTDLEWEAARLMQQDDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            + +QW ++    + +  G     +  ++F VGD KQSIY F  A+ +     + +     
Sbjct: 424  NPMQWRIL----QGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADARLFDAAREMLVAEF 479

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +++    + R+   +L  V+ VF            +  +    +        +
Sbjct: 480  NA-----TVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQS---TAVDAPMGQAL 531

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
             L    VS+ +           +       +S      R++A  +  +   + I   G +
Sbjct: 532  LLPLVPVSEAEQADEAAPRDTLTEPREEAGDSQRYAEGRQVAACLRALHANERIREGGIE 591

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R ++  D  +LVR+++         R    D  +  +   R  L   L   DL AL  F+
Sbjct: 592  RAVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDFL 647

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEYIQKFANCGISK--FQHV 484
            ++ + DLS   +L+SP+F  S++ +  +          T +E +   A    +    ++ 
Sbjct: 648  MTPQADLSLAHVLRSPVFAASDEHLIALAQFGEGAAALTWWERLTALAGQADASDTLRYA 707

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNE 540
             + +   + +A+    HD    I+   + ++++  R      ++V+  LD FL   L  +
Sbjct: 708  HRMLSRWLAVARTLPVHDLLDHIVYTGELKRRYAERAPAANRDQVLANLDAFLKLALDLD 767

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANH--------------------NEVRIMTVHTA 580
               Y SL + ++EL       +                           + V+I+TVH +
Sbjct: 768  GGRYPSLPKFMAELRAIRQGDEDESPDEGMQGDTEAPDAIDAEVANEGLDAVQILTVHAS 827

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE+P V L+D+            +   P     P       ++  R      L K   
Sbjct: 828  KGLEAPFVVLLDSHHSDARVDTAGILIDWPPGAQAPAHFSAFGKTSERGLAREPLFKQEN 887

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
               + E   LLYV MTRA   LI+   +N  +   +                       L
Sbjct: 888  ALAERENWNLLYVAMTRARQALIVSGVANKRDATAAQS---------------------L 926

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                  +      W T             +  + D             +D   P  +   
Sbjct: 927  DEGDAPEVDGTASWYTLLASAGVASPAAMLDDVADSVSSAAGHELVSYHDFRAPLTVTVR 986

Query: 761  TIDTKGKTNLESLLSDNQTF-NRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLW 816
                       + +  +Q    +G ++H +L+ +       +      I  +    A   
Sbjct: 987  VGAAGAPAEGAADIVFDQGAVAQGELLHAVLERLTRRGLPKQAPDGETIARW--FGATGV 1044

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
               +      ++ R+L    +        +       ++      ++   RID++     
Sbjct: 1045 TQADATRAADAVRRMLSAEALAHVFDPARFDAAHNEIELFGRDGALL---RIDRLIERGN 1101

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
             + + +YK    +P E       +  QL  Y   +   YP +++      V+  +   I 
Sbjct: 1102 EVLVVDYKL-RLLPVE----RAAYADQLRGYVAAVTPMYPGRTVRAG---VATAQGEWID 1153

Query: 937  QNKL 940
               L
Sbjct: 1154 LEAL 1157


>gi|168205088|ref|ZP_02631093.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str.
           JGS1987]
 gi|170663345|gb|EDT16028.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str.
           JGS1987]
          Length = 751

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 105/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K+N  LDF+DLI+ T +L +K +    +      +  +I+IDE QDT+ 
Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E  + L              + +  VGD+ Q IY++ GA+ + +L  ++   +    
Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS  +IL   +KV       +                         
Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +     +     +Y D         + A  +   I  +            + 
Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEASFVVSEIEKL---------KSDKG 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KD  VL R    +       R       I           D   IKD++A  + I++
Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483
            +D +S   ++  P  +  +  + K+        +T+Y      +Y+       I+  + 
Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540
               + E++ +++  S       +L      +             I+ L+E ++  +  E
Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519

Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +++    + L S LE+           A  N V +MTVH++KGLE P VFLV   + +F 
Sbjct: 520 KSNEED-KSLSSYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                                         +  EE  RL YVG+TRA 
Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++L +          K+      D + +   N +  
Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640


>gi|164687737|ref|ZP_02211765.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM
           16795]
 gi|164603511|gb|EDQ96976.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM
           16795]
          Length = 746

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 109/572 (19%), Positives = 203/572 (35%), Gaps = 114/572 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + A Y++  K+N  LDF+DLI  T +L ++ +    +         +I++DE QDTS 
Sbjct: 173 ADVYALYQDRLKRNSALDFDDLISKTVELFREHED---VLDFYRNRFRYIMVDEYQDTSR 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E++R L +            + +  VGD+ QSIY + GA+ + +L  +R        
Sbjct: 230 AQYELVRLLAQ----------GHQNICVVGDDDQSIYGWRGADIRNILEFERDYD----- 274

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL   + +       +     S                 +L
Sbjct: 275 ---DVHVIKLEQNYRSTQIILDAANYLIKNNIERKRKKLWSEKKEG------------EL 319

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            +  +++ +                          A  +A TIS M+ T           
Sbjct: 320 IKIQLAETEVD-----------------------EAEFVANTISTMVRTGER-------- 348

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  VL R       +        N  +I           +   IKD++A  R I +
Sbjct: 349 -SYKDFAVLYRANAQARPVEDAL----NRAQIPYNIYGGTKFYERKEIKDMVAYLRVIQN 403

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVY------EYIQKFANCGISKFQH 483
            +DD+S   ++  P        I KI  +   + E++Y      +     +    +    
Sbjct: 404 PQDDISLKRIINVPRRGIGLRTIEKIEDRASLKEESLYSVLIDIDGNSDISRKAKASING 463

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  +     + Q          ++       +       E    I+ L EF++  +  E
Sbjct: 464 FVDIMSTFRSLKQIYPASKMIEKVMDITGYLDELEKDKSEESQDRIENLKEFISVAMEFE 523

Query: 541 QNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +   SL+  ++ +             + + V +MT+H+AKGLE PVVFL     ++F 
Sbjct: 524 SKNEDTSLEAFLTNVALTSE--PNEEEEHADRVSLMTIHSAKGLEFPVVFLTGMEEKLFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                           ++  I  ++ +  EE  RL YVG+TRA 
Sbjct: 582 --------------------------------IARAIASMQDTQIEEERRLCYVGITRAK 609

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           ++L +      +   ++N       + +   +
Sbjct: 610 EELFMTMTGKRTLYGRTNHSVASRFIEELPDD 641


>gi|261367235|ref|ZP_05980118.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum variabile
            DSM 15176]
 gi|282570836|gb|EFB76371.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum variabile
            DSM 15176]
          Length = 1160

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 159/970 (16%), Positives = 299/970 (30%), Gaps = 112/970 (11%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                     + +  ++    +        + + + L Q  Q    +   + L        
Sbjct: 227  AQALLEAGARTAARDEAADAAYTAVLQDDVSRVEWLCQKLQQGDWDAAVAALEEL----G 282

Query: 78   FTPQKN-------------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
             + +K                  E+  ++      L+           + +  +      
Sbjct: 283  GSWRKAGRIKGGKDSNPVAFAASELRDRAKKQIAALRTDFLLCTAEEYQEDRRRAAPLVA 342

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILID 183
            A + + +        AK +  +LD+ D    T DLL   D     + + + +  + +L+D
Sbjct: 343  ALVRITQRFADACFAAKCEEKLLDYADFEHLTLDLLIAPDGSRTPLCHTVSERYSAVLVD 402

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT+ +Q  +  +L                LF VGD KQSIY F  A+P   L +++ 
Sbjct: 403  EYQDTNALQDAIYFALAS---------PEADNLFFVGDIKQSIYRFRQADPAVFLGKQQC 453

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS--IPENAQGLSEDSTTTIRHRSSR 301
             Q     A Q    + L  +FRS   ++  ++ +FS    E   G++      +      
Sbjct: 454  WQPYPQPAPQPA-TLALDANFRSAPQVIEGINYLFSVFFSEGLGGVTYGDGQRLVVGKPD 512

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            +   G  ++     +                                IA  I+ M+    
Sbjct: 513  VSYPGLCEVDVLDGADAAGDAA------------------------GIAQRIAGMMQEGF 548

Query: 362  IFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
               +    R  +  D  +L+R R D  +     R  +    I V  +    L D   I+ 
Sbjct: 549  AVRDKTGTRPCRYDDFCILLRGRADFSIYEEALRAAE----IPVFADTAADLLDAPHIRP 604

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
              AL R I +   D+    +L SP+F ++ DD+  +     +              G  +
Sbjct: 605  FAALLRVIDNPAQDIPLAAVLLSPMFPYTPDDLVSLRRACPQGS----LYGAVLYGGQPR 660

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539
            F    + + E   +A+          +L          +   G    + L  F+ +    
Sbjct: 661  FAAFTESLAEYRRLARTLPVDRLLEELLARTGYLAAVGALPDGARCREDLLTFVTWAGGA 720

Query: 540  EQNSYSSL-QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +   S+L + + S                   V IMTVH +KGLE PVVF+ +T  Q  
Sbjct: 721  GRAGLSALVRAMDSAAANGGLNQSGGGQTRPGCVSIMTVHRSKGLEFPVVFVANTAHQFN 780

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                I+ +     L     +       + +    + L + ++  T  E  R+LYV +TRA
Sbjct: 781  QSDAIRPVLTHSRLGVGVMLRAGKSAKRYKTLPYAALAQAIRTETLSEEMRVLYVALTRA 840

Query: 659  SDQLIICKHSNTSNEKKSNQ-----------------RTWYDMVYDSFHNDERVKKIKLT 701
             D LI+      ++                        +W   +  +         +   
Sbjct: 841  QDALIVTIPLKKTDSALKTPALCAAAEATGPEAMQGMSSWAGWLLTAVLLHPESDALWAH 900

Query: 702  NSINKDE--------WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
              +                      PE  P    +    L    +      +P +     
Sbjct: 901  TPLLPHHLPTKVPLTVRLLPAPEAMPEQPPCLEVQPDVSLRRALEETFAWHNPREKLQKI 960

Query: 754  PYILNPSTIDT-----KGKTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITS 807
            P  ++ S +         +       S      RG  IH  LQ +    P    +  +  
Sbjct: 961  PAKVSVSAVTHGARPVALERPAFLQKSGMTGAERGTAIHAFLQSVPFDGPAPDLQAEVQR 1020

Query: 808  YCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSC-DSYSEVSVSGKINC-------- 857
               K+ +L  A   + L L  +    E+ +     +      E      +          
Sbjct: 1021 --QKDLRLLDADLAEKLDLERVRPFFESGVWRRIRAARRVLREEPFITALPASQVAPEAG 1078

Query: 858  -PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
                ++++ G  D + +   +  I +YKT     +E E     + AQL +Y         
Sbjct: 1079 QSDAEVLVQGIADLVLVFDDHAEICDYKTD--ASREPEFYKKEYAAQLQLYRHAFA-LRL 1135

Query: 917  NKSLVCLLIY 926
               +  L IY
Sbjct: 1136 GVPVTKLTIY 1145


>gi|168216776|ref|ZP_02642401.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC 8239]
 gi|182381218|gb|EDT78697.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC 8239]
          Length = 751

 Score =  324 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 104/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K+N  LDF+DLI+ T +L +K +    +      +  +I+IDE QDT+ 
Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E  + L              + +  VGD+ Q IY++ GA+ + +L  ++   +    
Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS  +IL   +KV       +                         
Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNSERKFKIL--------------------- 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +     +     +Y D         + A  +   I  +            + 
Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KSDKG 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KD  VL R    +       R       I           D   IKD++A  + I++
Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483
            +D +S   ++  P  +  +  + K+        +T+Y      +Y+       I+  + 
Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540
               + E++ +++  S       +L      +             I+ L+E ++  +  E
Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519

Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +++    + L + LE+           A  N V +MTVH++KGLE P VFLV   + +F 
Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                                         +  EE  RL YVG+TRA 
Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++L +          K+      D + +   N +  
Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640


>gi|255526474|ref|ZP_05393385.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296184847|ref|ZP_06853258.1| putative ATP-dependent DNA helicase PcrA [Clostridium
           carboxidivorans P7]
 gi|255509856|gb|EET86185.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296050629|gb|EFG90052.1| putative ATP-dependent DNA helicase PcrA [Clostridium
           carboxidivorans P7]
          Length = 754

 Score =  324 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 108/600 (18%), Positives = 206/600 (34%), Gaps = 117/600 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +E + K  ++   +       K  +       +A      Y++  K N  LDF+DLI  T
Sbjct: 137 REIINKIGEQKDNLISPDRYKKENEGNYRLNKIADA-YMLYQKKLKSNNALDFDDLIYKT 195

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +L KK +    +     ++  ++++DE QDT+  Q+E+++ L           +  R +
Sbjct: 196 VELFKKNEE---VLDFYQRKFQYVMVDEYQDTNKSQYELVKLLA----------TKHRNI 242

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ Q IY++ GA+ K +L  ++   +          +I+L  ++RS  +IL   + 
Sbjct: 243 CVVGDDDQCIYAWRGADIKNILGFEKDYPE--------AKVIKLEQNYRSKGNILKAAND 294

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V       +                               + +++   + + + +Y D  
Sbjct: 295 VIKNNAERKRKVL---------------------------RTENEDGERIKIYRAYSDME 327

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                    A  +A  I  +          K    + KD  VL R    +     +    
Sbjct: 328 E--------ANYVASQIRKI---------TKDNNKKYKDFAVLYRTNAQSRTFEDIF--- 367

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                I           D   IKD++A  +F+ +  DD+S   ++  P  +  +  + K+
Sbjct: 368 -MKSNIPYRIIGGLKFYDRKEIKDILAYLKFVNNPLDDVSLRRIINVPKRSIGDATVKKV 426

Query: 457 CTQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               +  E          E +      G +  +  +  I+  I      +       IL 
Sbjct: 427 QEFANSMEECMYSVLLDIEQVPSIPTRGTASIKKFVSLINSFIRSKDEIAVSSLIKEILD 486

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAH 565
                ++       +    I+ L E ++  +  E  +   SL   + ++           
Sbjct: 487 TTGYLEELKDSQDIDALSRIENLKELVSAAVEFESTSEDKSLSAFLEKVTLVSDIDNFN- 545

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             + + V +MTVH+AKGLE PVVF+V   + +F                           
Sbjct: 546 -EDADTVVMMTVHSAKGLEFPVVFMVGMENGIFPGSQSLNDFS----------------- 587

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                              EE  RL YVG+TRA +QL +          ++   +  D +
Sbjct: 588 -----------------EMEESRRLCYVGITRAKEQLYMTSAEQRRVFGRTVSYSESDFI 630


>gi|126697900|ref|YP_001086797.1| ATP-dependent DNA helicase [Clostridium difficile 630]
 gi|254973999|ref|ZP_05270471.1| ATP-dependent DNA helicase [Clostridium difficile QCD-66c26]
 gi|255099501|ref|ZP_05328478.1| ATP-dependent DNA helicase [Clostridium difficile QCD-63q42]
 gi|255305356|ref|ZP_05349528.1| ATP-dependent DNA helicase [Clostridium difficile ATCC 43255]
 gi|255313045|ref|ZP_05354628.1| ATP-dependent DNA helicase [Clostridium difficile QCD-76w55]
 gi|255515802|ref|ZP_05383478.1| ATP-dependent DNA helicase [Clostridium difficile QCD-97b34]
 gi|255654387|ref|ZP_05399796.1| ATP-dependent DNA helicase [Clostridium difficile QCD-23m63]
 gi|306519010|ref|ZP_07405357.1| ATP-dependent DNA helicase [Clostridium difficile QCD-32g58]
 gi|115249337|emb|CAJ67150.1| DNA helicase, UvrD/REP type [Clostridium difficile]
          Length = 754

 Score =  324 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 117/563 (20%), Positives = 200/563 (35%), Gaps = 123/563 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + A Y++  K+N  LDF+DLI+ T +L K  D    +         +I++DE QDTS 
Sbjct: 169 ADIYALYQDRLKRNSALDFDDLILKTVELFKANDE---VLAYYRSRFRYIMVDEYQDTSK 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+I+ L  +           + +  VGD+ QSIY + GA+ + +L  ++        
Sbjct: 226 AQYELIKLLARE----------HQNICVVGDDDQSIYGWRGADIRNILEFEKDYDN---- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RST  IL   +KV S     +     S                 +L
Sbjct: 272 ----VHVVKLEQNYRSTQVILDAANKVISNNIERKRKKLWSEKKEG------------EL 315

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            +  ++  + +                        A  IA +I+ +   +          
Sbjct: 316 IKIQLTGSEIE-----------------------EADFIADSIAQIARKENR-------- 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  VL R       +        N  +I           +   IKDL+A  R I +
Sbjct: 345 -PYKDFAVLYRANAQARPVEDAL----NRSQIPYNIYGGTKFYERKEIKDLLAYLRVIQN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYIQKFANCGISKFQH 483
            +DD+S   ++  P        I KI      + E++Y      E     +    +    
Sbjct: 400 PQDDISIKRIINVPRRGIGLRTIEKIEDRANLKQESIYSVLIDIETNSDISTKARASISG 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-------------RFGNEVIDVLD 530
            +  I  L  I +          +L       + +                  + ID L 
Sbjct: 460 FVDIIGTLRTIKEVYPVSKLIEKVLDTTGYMDELVEIRNKNEKDLTGKGEEAQDRIDNLR 519

Query: 531 EFLNFTLRNEQNSYSSLQ--ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           EF++  L  E ++  + +  +L + L     T +     +++ V +MT+HT+KGLE PVV
Sbjct: 520 EFISIALEFESSNDDTYENKDLETFLTSIALTSESNDEEDNDRVSLMTIHTSKGLEFPVV 579

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FL      +F                                     IK +  S  EE  
Sbjct: 580 FLTGMEEGLFPISR--------------------------------AIKSMSDSQIEEER 607

Query: 649 RLLYVGMTRASDQLIICKHSNTS 671
           RL YVG+TRA ++L +      +
Sbjct: 608 RLCYVGITRAKEELYMSLTEKRT 630


>gi|148381216|ref|YP_001255757.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC
           3502]
 gi|153933103|ref|YP_001385591.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC
           19397]
 gi|153936248|ref|YP_001388997.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall]
 gi|168179081|ref|ZP_02613745.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916]
 gi|148290700|emb|CAL84830.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152929147|gb|ABS34647.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC
           19397]
 gi|152932162|gb|ABS37661.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall]
 gi|182670183|gb|EDT82159.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916]
          Length = 738

 Score =  324 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 105/575 (18%), Positives = 195/575 (33%), Gaps = 116/575 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K N  LDF+DLI  T +L K       +     ++  +I++DE QDT+ 
Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KDVLEFYQRKFKYIMVDEYQDTNK 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L              R +  VGD+ Q IY + GA+   +L  ++        
Sbjct: 227 SQYELVKLLAL----------VHRNMCVVGDDDQCIYEWRGADISNILNFEKDY------ 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             ++  +I+L  ++RS  +IL   ++V       +                         
Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +++   + + + +Y D           A+ +A  I  +I             
Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDSER-------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VL R    + +   +         I           D   IKDLMA  + I +
Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483
             DD+S   ++  P  +  +  + K+    +E +          + I   +   I+  + 
Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  ++  I      S       IL      ++  +    +    ++ L E ++     E
Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +   SL   + ++             N + V +MTVH+AKGLE PVVF+V   + +F 
Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                        EE  RL YV +TRA 
Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
           +QL I          ++      D V +   + + 
Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639


>gi|170758795|ref|YP_001788588.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405784|gb|ACA54195.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 738

 Score =  324 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 105/575 (18%), Positives = 196/575 (34%), Gaps = 116/575 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K N  LDF+DLI  T +L K       +     ++  +I++DE QDT+ 
Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KDVLEFYQRKFKYIMVDEYQDTNK 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L              R +  VGD+ Q IY + GA+   +L  ++        
Sbjct: 227 SQYELVKLLAL----------VHRNMCVVGDDDQCIYEWRGADISNILNFEKDY------ 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             ++  +I+L  ++RS  +IL   ++V       +                         
Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +++   + + + +Y D           A+ +A  I  +I  +          
Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDNEK-------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VL R    + +   +         I           D   IKDLMA  + I +
Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483
             DD+S   ++  P  +  +  + K+    +E +          + I   +   I+  + 
Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  ++  I      S       IL      ++  +    +    ++ L E ++     E
Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +   SL   + ++             N + V +MTVH+AKGLE PVVF+V   + +F 
Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                        EE  RL YV +TRA 
Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
           +QL I          ++      D V +   + + 
Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639


>gi|210623345|ref|ZP_03293743.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275]
 gi|210153655|gb|EEA84661.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275]
          Length = 755

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 125/632 (19%), Positives = 213/632 (33%), Gaps = 134/632 (21%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                  L    L +     K    + +       K+KLK  +             K+  
Sbjct: 110 DAADQVTLIKDCLKELNISDKAFEPKTVISYISGAKDKLKSPKQYKDDCAGDPRMSKI-- 167

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                      + + Y++  K+N  LDF+DLII T +L KK      +         +I+
Sbjct: 168 ---------ADIYSLYQDRLKRNSALDFDDLIIKTVELFKKNPE---VLDYYRSRFRYIM 215

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDTS+ Q+E I+ L              + +  VGD+ QSIY + GA+ + +L  +
Sbjct: 216 VDEYQDTSMAQYEFIKQLA----------MGHKNICVVGDDDQSIYGWRGADIRNILEFE 265

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +              +++L  ++RST  IL   + V S     +                
Sbjct: 266 KDYDDVF--------VVKLEQNYRSTQVILDAANHVISNNIERKRKK------------- 304

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW         +   ++       + L +        R IA TI + +  + 
Sbjct: 305 --------LW-------SEKTEGEKIKIELAENELEEG-------RFIAETIIDKVQGEG 342

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                     +  D  VL R       I        N   +           +   IKDL
Sbjct: 343 R---------KYSDCAVLYRANAQARPIEDAL----NRAGVPYNIYGGTKFYERKEIKDL 389

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVY------EYIQKFA 474
           +A  R I + +DD+S   ++  P        I KI  +   + E++Y      +   + +
Sbjct: 390 IAYLRIIANPQDDISLKRIINVPRRGIGLRTIEKIEDRASLKQESMYSVLLDIDSNSEIS 449

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF------------- 521
                +    +  +  L  I +          +L +     +                  
Sbjct: 450 TKAKKQINGFVDLVGTLRAIKEVYPVSKLIEKVLDSTGYIYELEEEMKKNQNSMNGKYEE 509

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQE--LISELEQYPPTIKRAHSANHNEVRIMTVHT 579
             + ID L+EF++  L  E +   +L++  L + L     T +       N V +MT+HT
Sbjct: 510 AQDRIDNLNEFISIALEFENSDDENLEDKSLETFLTSVALTSEATEDEEPNRVSLMTMHT 569

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE PVVF+      +F                                     IK +
Sbjct: 570 SKGLEFPVVFITGMEEGLFPISR--------------------------------AIKSM 597

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           K S  EE  RL YVG+TRA ++L +      +
Sbjct: 598 KDSDIEEERRLCYVGITRAREELYLTMTEKRT 629


>gi|110803328|ref|YP_699522.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101]
 gi|110683829|gb|ABG87199.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101]
          Length = 751

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 104/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K+N  LDF+DLI+ T +L +K +    +      +  +I+IDE QDT+ 
Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E  + L              + +  VGD+ Q IY++ GA+ + +L  ++   +    
Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS  +IL   +KV       +                         
Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +     +     +Y D         + A  +   I  +            + 
Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KSDKG 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KD  VL R    +       R       I           D   IKD++A  + I++
Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDVLAYLKIIVN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483
            +D +S   ++  P  +  +  + K+        +T+Y      +Y+       I+  + 
Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHASEIDDTLYNVLLDVDYVPGLTARSINPIKK 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540
               + E++ +++  S       +L      +             I+ L+E ++  +  E
Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519

Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +++    + L + LE+           A  N V +MTVH++KGLE P VFLV   + +F 
Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                                         +  EE  RL YVG+TRA 
Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++L +          K+      D + +   N +  
Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640


>gi|218533282|ref|YP_002424097.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
 gi|218525585|gb|ACK86169.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
          Length = 1117

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 159/938 (16%), Positives = 301/938 (32%), Gaps = 94/938 (10%)

Query: 28   VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
            V+      +   + G     +    L     T   E         F   +   +K     
Sbjct: 240  VTAFEVMAARLPDAGAVDDSELIAIL-----TAPAEANLCKADGDFAKYRGGKKKWADAA 294

Query: 88   EINKKSPDLKEKLKKSQDEF----IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
            ++        E+L+   +       +   R       +     +     +   Y+  K+ 
Sbjct: 295  KMVGLPKAEAERLQACAERLHVECCETWARLKANAASELLARLVGAVGAVLERYQARKRA 354

Query: 144  NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              +LDF+DLI     LL++ ++   +R  + +   H+L+DE QDT  +Q E++  L  + 
Sbjct: 355  GALLDFDDLIAAAAKLLREHEI---VRQALGRRYRHVLVDEFQDTDPLQTEILWRLCGEL 411

Query: 204  FVGKNTHSSPR-----TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
              G     + R      LF VGD KQ+IY F GA+    +R +     +         ++
Sbjct: 412  PAGATDVWAQRVLRPGALFLVGDPKQAIYRFRGADVSTYVRARNCILAQ-----SPGDVL 466

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             +  +FRS   IL  VD+ F    +  G    +     H        G       V +  
Sbjct: 467  SISTNFRSCRSILAYVDQRFRNILSGVGQPGFTALDAYH---PDHGRGPCIAALDVPAGA 523

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDIL 377
            D                   ++   + A  +A   + +IG   +       R ++A DI 
Sbjct: 524  DGAKQ-------------DAQALRDVEAEAVADLCARLIGQQLVTCKRDGTRTLRAGDIA 570

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L     D                I V             I DL+AL R +    D L+ 
Sbjct: 571  LLAPSGSDLWRYEEALES----RGIPVSTQAGKGFFRRQEIHDLIALARVLADPRDTLAL 626

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF------ANCGISKFQHVIKYIHEL 491
              +L+ P    +++++  +           E I K       A+      + V + +  L
Sbjct: 627  GALLRGPAIGLTDEELLDLVDGLPRDPEHPESIPKLRLQVDVAHISHPVARPVFERLQVL 686

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQ 548
               A   +PHD  +  + A   R     R+          +D FL  +         +  
Sbjct: 687  AKRALGTTPHDILSQAVDALMLRPVVRHRYDGHAERALANIDLFLEMSRPYSVRGLRAFA 746

Query: 549  E-LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              + +  E     ++    +    V + T+H +KGLE PVV  ++T          +   
Sbjct: 747  GVMKASWEGRTRAVEGRPDSQEAAVSLFTMHASKGLEWPVVIPINT--------STRTKA 798

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +  +L D     ++ P    R     + +++ K+    E  RL YV  TRA + L++ + 
Sbjct: 799  VTGALIDRTSNCLYCPVFGVRPVGYGEALENEKREVGNERVRLWYVAATRARETLVLPRF 858

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                                 + +   +    L          A   ++  P N      
Sbjct: 859  VEPGGSTS-------------WSSVVDLGLDDLPAIDIDRLPTAPPPASTEPANAQTREV 905

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST-IDTKGKTNLESLLSDNQTFNRGLII 786
               +     ++       P + +        PS  ++ +      +         RG++I
Sbjct: 906  FAAEADAVARRRRLSWVVPSRGEDAGTIACCPSDMVEEEVDVPPTAAAIPQGGRERGILI 965

Query: 787  HKLLQVI-----FTLPEHKRKNFITSYCTKNAKLWPAKEYK--NLLLSITRLLENPMMTT 839
            HKLL+ I       +    R   +        K  P        +  S+ R L  P +  
Sbjct: 966  HKLLEEILTGETGEVDLEGRAGVLARQLGLRTKATPDFALDLGEVAASVLRALSVPEIAG 1025

Query: 840  AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNI-FIFEYKTHHHVPQEIEHIP 897
                    E+ V G  +   +D   +G  D I +        + ++K+        E + 
Sbjct: 1026 M-RERLQPELPVFGFESLADEDHATAGVADAIILDGLGRPDVVVDWKSDVDPS---EAVI 1081

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              +  Q+  Y    +          LL++ +  +V  +
Sbjct: 1082 ADYRCQVLRYLLATEARL------GLLVFATSGRVVKV 1113


>gi|256544667|ref|ZP_05472039.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399556|gb|EEU13161.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 1139

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 156/945 (16%), Positives = 318/945 (33%), Gaps = 131/945 (13%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFL------TQKFTPQKNIITQEINKKSPDLK 97
               L   + ++ + + +  +E   +  +          +   P +N   +       D  
Sbjct: 250  EKDLSYLEKIKNSIEEKTWDEVIEIFENGLANMVTISKKLDDPNENAYVKAKKNAYKDEF 309

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
              +K        I   F      K       L       Y   K++   LDF D+     
Sbjct: 310  NIVKDFVKNTDSITRGFFNPLEDKILNELKNLVFSFEKIYTNKKREENYLDFSDMEHEFI 369

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
             LL        ++ K+ ++  +I  DE QD++ IQ  ++  L  +             LF
Sbjct: 370  KLLDNE----KLQSKLKKQFKYIFFDEYQDSNDIQNYIVEKLKNE-----------NNLF 414

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGD KQSIY F  A P+  L++         +       I L  +FR+  D++   + +
Sbjct: 415  FVGDVKQSIYGFRNARPELFLKKLEGY-----DTDSNCLRINLSKNFRTDKDLIDFNNYI 469

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            F      +                                   +  P+        +   
Sbjct: 470  FDRLMTRKNSDIAYKD---------------DNHRLNYHFEFDEKYPKVSIKALAKNVSE 514

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            +          +   I+N+I +           ++ KDI +L+R      L     +   
Sbjct: 515  E--------AYLTKEINNLINSG----------LEYKDIAILLRSSSKAYLFENELK--- 553

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                I    +   I  + + ++  + + ++I +  DD+S + +L+S +FNFSEDD+ +I 
Sbjct: 554  -RAGIPFSSDISKISFETVEVEFFINILKYIANPNDDISLLSVLRSEIFNFSEDDLAEIS 612

Query: 458  TQRHETET---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                ++       EY ++  N    K         +  +I  F + +DF  +I       
Sbjct: 613  LSSEKSHFYKKFKEYEKENENNLSQKISDFNTIFTDFSYILNFSTMYDFANIIFEKSGFY 672

Query: 515  QQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSA 567
                +R  G E +  ++ F+      ++N+ +SL   ++ ++      +      R  S 
Sbjct: 673  DFLKARDRGEERVKNIEAFIELMDDYDKNNENSLFGFLAYIDNLKNQKKDNLKASRNLSD 732

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            + N VRIMT+H +KGLE   V L D   +  +  + K M +   L     I  W  + K 
Sbjct: 733  DENLVRIMTIHKSKGLEFKAVILPDFSKRFNTRDNSKDMVLDKDLGIGINIADWENKIKI 792

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN---------Q 678
             +     +++    + ++E  R+LYV +TRA  ++ I    + + +              
Sbjct: 793  SSIKRDLILEKSNLNDKKEEMRVLYVALTRAERKISIIGKKDLNQKGLEKILNANSVLDL 852

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE----------NTPLEREE 728
             ++ D +     +D+ +      +         +    +  +          +       
Sbjct: 853  SSYMDWILKILCDDKIMSDFIDIDYKTDAFNKGFLEIKYIEDFIEDYKKDYTDVEKLIGA 912

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG----------KTNLESLLSDNQ 778
                    + I +      KN  N    L  S  +             K+  E   +  +
Sbjct: 913  DEYNQKIYKDIEEVFNFSYKNKENINKSLKKSVTEIAKNYDLSKDGYEKSPFEENEAFYE 972

Query: 779  ------------TFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                          ++G +IHK+ Q +   +   +  +  I             +    +
Sbjct: 973  FRKPNFEEIKLSATDKGTLIHKIFQELEVKSYDLNSLEKEINKLVDL--GKIKKEYLPYI 1030

Query: 825  -LLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
               +I     + ++   M  S     E S   KI     D  ++G+ID +  SQ  + + 
Sbjct: 1031 NFENILGFFNSKIIQDLMKKSPKIRKEESFLRKI----DDFYVNGQIDIMFESQNEVVLM 1086

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            ++KT     +        +  QL IY+  ++++   K +   + +
Sbjct: 1087 DFKTDSIKREGF------YDKQLEIYKDSIEEALGKKVISSYIYW 1125


>gi|116514017|ref|YP_812923.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
            delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122275213|sp|Q04AN7|ADDA_LACDB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|116093332|gb|ABJ58485.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus
            delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1227

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 157/1017 (15%), Positives = 318/1017 (31%), Gaps = 142/1017 (13%)

Query: 29   SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88
            +D +       +           + +++  T    +R   L +       T + N    +
Sbjct: 244  ADFDHEKFAKYQPAFTAFATSLASYRESLATDDPFDRQRELLAAC-QFDGTLRTNKEIAD 302

Query: 89   INKKSPDLKEKLKKSQDEFIK-------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
              +++ ++KE  K+                      K  +   A+  +       + E K
Sbjct: 303  FVEEAKEVKEAGKQLVFNVYTSFYASSNADQHALLAKGAEIASAAAEVELAFIDRFNELK 362

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            + + VLDF D+     ++L +   ++ + R         I++DE QDT+ +Q  +I+ L 
Sbjct: 363  RADRVLDFSDMEQLAYEILTQDSSNSDLARAYYQSRFKEIMVDEYQDTNALQDGLIQRL- 421

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                      +    LF VGD KQSIY F  AEP   + +     +  +        I  
Sbjct: 422  --------KKAGKNNLFMVGDVKQSIYGFRQAEPSLFIAKYDEYGQENSAGK---QRIIF 470

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              +FRS+  +   V+ +F           D     + + +           E  V   + 
Sbjct: 471  AENFRSSQPVTQAVNLIFDSLLTKDFGGIDYQKEGQLKFAAGYDPEAALPTETEVLYQED 530

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDIL 377
                  +   +  D              +   I  +I   T   +   G+ R +   DI 
Sbjct: 531  SSATDDDGELNQGDL-----------AMVISRIQKLIADQTPIFDPKTGQTRPVSYGDIA 579

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L R +          +   + Y + +   D         +  +M+  + I + + D+  
Sbjct: 580  ILTRSKTSNLD----IKQEFDRYGVPLFVMDVQNYFQTFELTVIMSYLKIIDNPDQDIPL 635

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCGISKFQHVIKYIHELIHIA 495
            V +L+SP+FNFS  D+ +I                 K      ++ +  +  + +L   +
Sbjct: 636  VAVLRSPIFNFSSSDLAEIRLVNKSVSFYAALRTYAKKDTDLAARCRDFLAQLQDLRDFS 695

Query: 496  QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                  +    I       +   +   G +    L          E + +  L + I+ +
Sbjct: 696  LSHRISELLWTIYERTSFLEIVTAMTNGQQRRLNLTALYERASAYESSGFKDLYQFINFI 755

Query: 555  EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
             +                  N V++MT+H +KGLE PVVF++    +    + I   +++
Sbjct: 756  ARMRKNQKDLAQPILSENAGNSVKLMTIHASKGLEFPVVFVLGLEHRYNYQQDITGSYVL 815

Query: 610  PSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
             +         P    + ++     + L    KK   EE  RLLYV +TRA  +LI+  +
Sbjct: 816  DASGLGLSFAYPFDEAEYRADTLANAWLKIAKKKKLLEEEARLLYVALTRAKQKLILAAN 875

Query: 668  SNTS------------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
                                        ++ K  +   +     +     +    K  + 
Sbjct: 876  IKLPARTDLAGLEEKWAKEISAGRLTLLDKMKVAKPLDFLAPALARAKQVKRLGEKAVSD 935

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----------------SPI 747
            +   +  +  +    P+    +  ++         + +                    P 
Sbjct: 936  LATGQEGSLVFVHFDPKKDQAQLPDSEAVAASGADLTEDEAAVFKQAEKLYTFSQGGYPY 995

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQ---------------------------TF 780
             +          S I       +E  L+D+                            + 
Sbjct: 996  LDASRTTAYQAVSEIKKVFGDPIEDELADSHISELQSANRYLQPIDTEPDFLFQNTVSSA 1055

Query: 781  NRGLIIHKLLQVIFTLPEHKRK---------------NFITSYCTKNAKLW--PAKEYKN 823
              G   H +LQ        K                   + S   + A  W   +   K+
Sbjct: 1056 ELGTASHLVLQYYDYAKGDKDAIDSCIAGLVEKGRLSQTLASMLDREALSWFVKSDFAKD 1115

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
                  RL       T +S  +          +     I++ G ID    ++  I +F+Y
Sbjct: 1116 FYQQPDRLHREENFATILSPKTLF-----KDFSDFPGKILVHGTIDGYYEAENGIILFDY 1170

Query: 884  KTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            KT H  P++ +     +   +  QL +YE+ L +S     L   L+ +S  ++  + 
Sbjct: 1171 KTDHVNPRKQDEAIQKLKEKYQGQLRLYERALNESGRLPVLKKYLVLLSCREIVEVD 1227


>gi|226950697|ref|YP_002805788.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str.
           Kyoto]
 gi|226843377|gb|ACO86043.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str.
           Kyoto]
          Length = 738

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 105/575 (18%), Positives = 195/575 (33%), Gaps = 116/575 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K N  LDF+DLI  T +L K       +     ++  +I++DE QDT+ 
Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KNVLEFYQRKFKYIMVDEYQDTNK 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L              R +  VGD+ Q IY + GA+   +L  ++        
Sbjct: 227 SQYELVKLLAL----------VHRNMCVVGDDDQCIYEWRGADISNILNFEKDY------ 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             ++  +I+L  ++RS  +IL   ++V       +                         
Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +++   + + + +Y D           A+ +A  I  +I             
Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDSER-------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VL R    + +   +         I           D   IKDLMA  + I +
Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483
             DD+S   ++  P  +  +  + K+    +E +          + I   +   I+  + 
Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  ++  I      S       IL      ++  +    +    ++ L E ++     E
Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +   SL   + ++             N + V +MTVH+AKGLE PVVF+V   + +F 
Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                        EE  RL YV +TRA 
Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
           +QL I          ++      D V +   + + 
Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639


>gi|260682110|ref|YP_003213395.1| ATP-dependent DNA helicase [Clostridium difficile CD196]
 gi|260685708|ref|YP_003216841.1| ATP-dependent DNA helicase [Clostridium difficile R20291]
 gi|296449111|ref|ZP_06890898.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP08]
 gi|296880912|ref|ZP_06904860.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP07]
 gi|260208273|emb|CBA60686.1| ATP-dependent DNA helicase [Clostridium difficile CD196]
 gi|260211724|emb|CBE02039.1| ATP-dependent DNA helicase [Clostridium difficile R20291]
 gi|296261930|gb|EFH08738.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP08]
 gi|296428199|gb|EFH14098.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP07]
          Length = 762

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 117/563 (20%), Positives = 200/563 (35%), Gaps = 123/563 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + A Y++  K+N  LDF+DLI+ T +L K  D    +         +I++DE QDTS 
Sbjct: 177 ADIYALYQDRLKRNSALDFDDLILKTVELFKANDE---VLAYYRSRFRYIMVDEYQDTSK 233

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+I+ L  +           + +  VGD+ QSIY + GA+ + +L  ++        
Sbjct: 234 AQYELIKLLARE----------HQNICVVGDDDQSIYGWRGADIRNILEFEKDYDN---- 279

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RST  IL   +KV S     +     S                 +L
Sbjct: 280 ----VHVVKLEQNYRSTQVILDAANKVISNNIERKRKKLWSEKKEG------------EL 323

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            +  ++  + +                        A  IA +I+ +   +          
Sbjct: 324 IKIQLTGSEIE-----------------------EADFIADSIAQIARKENR-------- 352

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  VL R       +        N  +I           +   IKDL+A  R I +
Sbjct: 353 -PYKDFAVLYRANAQARPVEDAL----NRSQIPYNIYGGTKFYERKEIKDLLAYLRVIQN 407

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYIQKFANCGISKFQH 483
            +DD+S   ++  P        I KI      + E++Y      E     +    +    
Sbjct: 408 PQDDISIKRIINVPRRGIGLRTIEKIEDRANLKQESIYSVLIDIETNSDISTKARASISG 467

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-------------RFGNEVIDVLD 530
            +  I  L  I +          +L       + +                  + ID L 
Sbjct: 468 FVDIIGTLRTIKEVYPVSKLIEKVLDTTGYMDELVEIRNKNEKDLTGKGEEAQDRIDNLR 527

Query: 531 EFLNFTLRNEQNSYSSLQ--ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           EF++  L  E ++  + +  +L + L     T +     +++ V +MT+HT+KGLE PVV
Sbjct: 528 EFISIALEFESSNDDTYENKDLETFLTSIALTSESNDEEDNDRVSLMTIHTSKGLEFPVV 587

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FL      +F                                     IK +  S  EE  
Sbjct: 588 FLTGMEEGLFPISR--------------------------------AIKSMSDSQIEEER 615

Query: 649 RLLYVGMTRASDQLIICKHSNTS 671
           RL YVG+TRA ++L +      +
Sbjct: 616 RLCYVGITRAKEELYMSLTEKRT 638


>gi|168211266|ref|ZP_02636891.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710740|gb|EDT22922.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str.
           ATCC 3626]
          Length = 751

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 104/576 (18%), Positives = 201/576 (34%), Gaps = 115/576 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K+N  LDF+DLI+ T +L +K +    +      +  +I+IDE QDT+ 
Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E  + L              + +  VGD+ Q IY++ GA+ + +L  ++   +    
Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS  +IL   +KV       +                         
Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +     +     +Y D         + A  +   I  +            + 
Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KSDKG 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KD  VL R    +       R       I           D   IKD++A  + I++
Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDVLAYLKIIVN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483
            +D +S   ++  P  +  +  + K+        +T+Y      +Y+       I+  + 
Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHASEIDDTLYNVLLDVDYVPGLTARSINPIKK 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540
               + E++ +++  S       +L      +             I+ L+E ++  +  E
Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519

Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +++    + L + LE+           A  N V +MTVH++KGLE P VFLV   + +F 
Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                                         +  EE  RL YVG+TRA 
Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++L +          K+      D + +   N +  
Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640


>gi|310826557|ref|YP_003958914.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612]
 gi|308738291|gb|ADO35951.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612]
          Length = 734

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 110/643 (17%), Positives = 205/643 (31%), Gaps = 128/643 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                  Y++  KKN  +DF+DLI NT  L K       I  +      +IL+DE QDT+
Sbjct: 169 VAQYYRLYQDTLKKNNAMDFDDLIYNTLVLFKGFPE---ILEQYQNRFKYILVDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E++  L              R L   GD+ QSIY + GA+   +L  ++       
Sbjct: 226 HSQYELVNLLAA----------KHRNLCVCGDDDQSIYMWRGADINNILDFEKDYP---- 271

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +++L  ++RST+ IL   +KV +     +  +                     
Sbjct: 272 ----DAKVVKLEENYRSTSVILDCANKVIANNTGRKDKN--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW +   +     +   + +                AR +A  I N+            +
Sbjct: 307 LWTRNPGEDKIVVSSFNQGYD--------------EARFVAQEIENLRAD---------K 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D  VL R    + L             +             + IKD+++    ++
Sbjct: 344 GYTYGDFAVLYRTNAQSRLFEEAF----MREGMPYQLIGGTGFYSRMEIKDIISYLHVLI 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-------VYEYIQKFANCGISKFQ 482
           +  D++ F+ ++  P        + KI                  E + + ++   +K +
Sbjct: 400 NPLDNIGFMRIVNVPKRGIGTATLEKIREFAEFKGWSLMETFYHCEEVPELSSSVRNKVR 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI---SRFGNEVIDVLDEFLNFTLRN 539
                + EL    +  S  +    ++      +             I+ L+E ++  +  
Sbjct: 460 EFAAVMEELRDRCETDSVSELIDHVIKDTGYLEMLELGKLDHSESRIENLEELISSAVEF 519

Query: 540 EQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E+ +   SL   +  +     T K         + +MT+H AKGLE PVVFL      +F
Sbjct: 520 EKNSDDKSLTAYLETVALTAETDKYDSEEGK--ILLMTLHNAKGLEFPVVFLPGVEEGIF 577

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                            EE  R+ YVG+TRA
Sbjct: 578 PHGRSMDNP----------------------------------EEMEEERRICYVGITRA 603

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            ++L +   +  +   +   +     +             +L     +     YE +   
Sbjct: 604 KERLYMSWAAERTVYGRRQPQMQSRFLK------------ELPPECLELNVQKYERNEIV 651

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
            E +  ++  +    +  +    K  +P K         N S 
Sbjct: 652 EEASVEKKTYSFSDHLQHKPNVYKSAAPKKAKEESSGAFNLSD 694


>gi|110800092|ref|YP_696932.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC
           13124]
 gi|110674739|gb|ABG83726.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC
           13124]
          Length = 751

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 104/576 (18%), Positives = 200/576 (34%), Gaps = 115/576 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K+N  LDF+DLI+ T +L +K +    +      +  +I+IDE QDT+ 
Sbjct: 169 ADAYLLYQKKLKENNALDFDDLIVKTVELFRKHND---VLEFYQNKFKYIMIDEYQDTNK 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E  + L              + +  VGD+ Q IY++ GA+ + +L  ++   +    
Sbjct: 226 AQYEFAKLLAA----------KHKNICVVGDDDQCIYAWRGADIRNILDFEKDYPE---- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS  +IL   +KV       +                         
Sbjct: 272 ----AKVVKLEQNYRSKGNILEAANKVIKNNAERKFKIL--------------------- 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +     +     +Y D         + A  +   I  +              
Sbjct: 307 ------RTEQVEGEKISIHRAYSD--------KMEAAFVVSEIEKL---------KNDNG 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KD  VL R    +       R       I           D   IKD++A  + I++
Sbjct: 344 YKYKDFAVLYRTNAQSRNFEEALR----RAGIPYRIFGGLKFYDRKEIKDILAYLKIIVN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKFQH 483
            +D +S   ++  P  +  +  + K+        +T+Y      +Y+       I+  + 
Sbjct: 400 PKDSISLRRIINVPKRSIGDTTVEKLQNHATEIDDTLYNVLLDVDYVPGLTARSINPIKK 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540
               + E++ +++  S       +L      +             I+ L+E ++  +  E
Sbjct: 460 FTDMMEEIMVMSEQLSVSQLIEYVLEKTGYLKSLKDSKLIEDQSRIENLEELVSDAVEFE 519

Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +++    + L + LE+           A  N V +MTVH++KGLE P VFLV   + +F 
Sbjct: 520 KSNEED-KSLSAYLEKVALVQDMDDLEAEDNYVMLMTVHSSKGLEFPTVFLVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                                         +  EE  RL YVG+TRA 
Sbjct: 579 N----------------------------------AACFEHDNQMEEARRLCYVGITRAE 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++L +          K+      D + +   N +  
Sbjct: 605 EKLYMTSAETRMIFGKTVAYGQSDFISEIPANIKDY 640


>gi|256112426|ref|ZP_05453347.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
 gi|265993864|ref|ZP_06106421.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
 gi|262764845|gb|EEZ10766.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
          Length = 710

 Score =  323 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 169/502 (33%), Positives = 257/502 (51%), Gaps = 19/502 (3%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61  CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            + ++ ++L + FL     P+    + +  + K  P+ +E+   +        DR    +
Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEFDTAAARVEMGLDRLKELR 343

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           + +  LA+LTL   L   Y + K++  +LDFEDLI  T  LL +     W++YK+D+ I+
Sbjct: 344 LVRLNLAALTLIDNLLQRYHDLKRRRGLLDFEDLITRTVALLARNGAGQWVQYKLDRGID 403

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HIL+DE QDTS  QW+VIR L+E+FF G    +  RTLFAVGDEKQSIYSF GA P    
Sbjct: 404 HILVDEAQDTSPDQWQVIRMLSEEFFSGLGQRNVQRTLFAVGDEKQSIYSFQGAVPDDFA 463

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            + R    +A+NA  KF  + L  SFRST D+L  VD+VF+ PE  +GLS        H 
Sbjct: 464 EQGRAISIQASNAELKFERVSLNFSFRSTPDVLQAVDEVFARPEANRGLSG----ATVHS 519

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           + R  + G +++W+ +      +   + + W    D L     A  LA +IA TI   + 
Sbjct: 520 AIRDKEPGEIEIWDMLTP----EMVEEPDDWRVPVDQLAA--PAVRLAEQIAATIRYWLD 573

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                  G+ R I  +DI+VLVRKR               +  + V G DR  LT H+AI
Sbjct: 574 RGEPIP-GQNRKIAPRDIMVLVRKRDQ---FMPALSRALKNLSVPVAGADRLQLTSHIAI 629

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           +DLMALGRF+L   DDLS   +LKSPLF + +D +F +   R   +T++EY+ + A+   
Sbjct: 630 QDLMALGRFVLQPSDDLSLAALLKSPLFGWDDDRLFTLAYPRGAGDTLFEYLYR-ASRHD 688

Query: 479 SKFQHVIKYIHELIHIAQFCSP 500
           ++   + K +    ++A     
Sbjct: 689 AELAQIHKLLSRWRNMADTMPV 710


>gi|187928127|ref|YP_001898614.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|187725017|gb|ACD26182.1| UvrD/REP helicase [Ralstonia pickettii 12J]
          Length = 1173

 Score =  323 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 155/958 (16%), Positives = 324/958 (33%), Gaps = 82/958 (8%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
              +  D+  +  +         +             A      S        F  L + F
Sbjct: 247  AALLADMLHVSGWLG---QGGAAEGKRAVAIESAVTAARGMDVSDEAARVRAFDALFAAF 303

Query: 74   LTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             TQ    +    T+ + K   D     L        +    I+ R    ++  +  A   
Sbjct: 304  HTQAGKARACKPTKALIKAVGDEHARTLVTLHTALCEALTTIQARRQEARVRAANAALFA 363

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            L   L   Y+  K++   +DF DL      L+++ D +A+++ ++D    H+L+DE QDT
Sbjct: 364  LGDALIDRYQAYKRQTRAMDFTDLEWEAARLMQQDDTAAYLQVRLDARYKHLLLDEFQDT 423

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            + +QW ++    + +  G     +  ++F VGD KQSIY F  A+ +     + +     
Sbjct: 424  NPMQWRIL----QGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADARLFDAAREMLVAEF 479

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +++    + R+   +L  V+ VF            +  +    +        +
Sbjct: 480  NA-----TVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQS---TAVDAPVGKAL 531

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
             L    V + +           +       +S      R++A  +  +  ++ I   G +
Sbjct: 532  LLPLVPVLEAERVDETTPRDTLTEPREEAGDSQRYAEGRQVAACLRALHASERIREGGVE 591

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R ++  D  +LVR+++         R    D  +  +   R  L   L   DL AL  F+
Sbjct: 592  RSVRWSDFQLLVRRKRYLADYERALR----DAGVPYLSPRRGGLLATLEALDLCALLDFL 647

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--TETVYEYIQKFANCGISK--FQHV 484
            ++ + DLS   +L+SP+F  ++D +  +          T +E +   A    +   F + 
Sbjct: 648  MTPQADLSLAHVLRSPVFAATDDHLIALAQFGEGTLALTWWERLTALAGQADASDTFHYA 707

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNE 540
             + +   + +A     HD    I+   + ++++  R      ++V+  LD FL   L  +
Sbjct: 708  HRMLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERAPAANRDQVLANLDAFLKLALDLD 767

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANH--------------------NEVRIMTVHTA 580
               Y SL + ++EL       +                           +  +I+TVH +
Sbjct: 768  GGRYPSLPKFMAELRAIRQGDEDESPDEGMQGDTDAPDAIDAEVASEGLDAAQILTVHAS 827

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE+P V L+D+            +   P     P       ++  R      L K   
Sbjct: 828  KGLEAPFVVLLDSHHSDARVDTAGILIDWPPGAQAPTHFSAFGKTSERGLARDPLFKQEH 887

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
               + E   LLYV MTRA   LI+   +N  +               +  + +     ++
Sbjct: 888  DLAERENWNLLYVAMTRARQALIVSGVANKRD-------------AAAAQSVDEGDAPEV 934

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
              + +    +A               +        E        +P+   +         
Sbjct: 935  DGTASWYTHLATAGVASPAPMVDGAADSADNAAGPEAVSYHDFRAPLTVTVR-------V 987

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAK 819
                        ++ D     +G ++H +L+ +      ++     +     +A      
Sbjct: 988  GAAGASAEGPADIVFDQGAVAQGELLHAVLERLTRRGLPEQAPDAETIARWFSATGVTQA 1047

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
            +      ++ R+     +        +       ++  P   ++   RID++     +I 
Sbjct: 1048 DATRTADAVRRMFSAETLMHVFDPACFDAAHNEIELFAPDGALL---RIDRLIERGNDIL 1104

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
            + +YK    +P E       +  QL  Y   +   YP +++    +  ++ +   +  
Sbjct: 1105 VVDYKL-RLLPVE----RAAYADQLRGYVAAISPMYPGRNVRAG-VATAQGEWIDLDA 1156


>gi|322807582|emb|CBZ05157.1| ATP-dependent DNA helicase UvrD/PcrA [Clostridium botulinum H04402
           065]
          Length = 738

 Score =  323 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 105/575 (18%), Positives = 195/575 (33%), Gaps = 116/575 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K N  LDF+DLI  T +L K       +     ++  +I++DE QDT+ 
Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KDVLEFYQRKFKYIMVDEYQDTNK 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L              R +  VGD+ Q IY + GA+   +L  ++        
Sbjct: 227 SQYELVKLLAL----------VHRNMCVVGDDDQCIYEWRGADISNILNFEKDY------ 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             ++  +I+L  ++RS  +IL   ++V       +                         
Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +++   + + + +Y D           A+ +A  I  +I             
Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDSER-------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VL R    + +   +         I           D   IKDLMA  + I +
Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483
             DD+S   ++  P  +  +  + K+    +E +          + I   +   I+  + 
Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  ++  I      S       IL      ++  +    +    ++ L E ++     E
Sbjct: 461 FVSIMNSFIRKKDEISVSAIIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +   SL   + ++             N + V +MTVH+AKGLE PVVF+V   + +F 
Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                        EE  RL YV +TRA 
Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
           +QL I          ++      D V +   + + 
Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639


>gi|153939400|ref|YP_001392617.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str.
           Langeland]
 gi|152935296|gb|ABS40794.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str.
           Langeland]
          Length = 738

 Score =  323 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 105/575 (18%), Positives = 195/575 (33%), Gaps = 116/575 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K N  LDF+DLI  T +L K       +     ++  +I++DE QDT+ 
Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KDVLEFYQRKFKYIMVDEYQDTNK 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L              R +  VGD+ Q IY + GA+   +L  ++        
Sbjct: 227 SQYELVKLLAL----------VHRNMCVVGDDDQCIYEWRGADISNILNFEKDY------ 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             ++  +I+L  ++RS  +IL   ++V       +                         
Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +++   + + + +Y D           A+ +A  I  +I             
Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDSER-------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VL R    + +   +         I           D   IKDLMA  + I +
Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483
             DD+S   ++  P  +  +  + K+    +E +          + I   +   I+  + 
Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  ++  I      S       IL      ++  +    +    ++ L E ++     E
Sbjct: 461 FVSIMNSFIRKKDEISVSAIIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +   SL   + ++             N + V +MTVH+AKGLE PVVF+V   + +F 
Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                        EE  RL YV +TRA 
Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
           +QL I          ++      D V +   + + 
Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639


>gi|237733547|ref|ZP_04564028.1| ATP-dependent deoxyribonuclease subunit A [Mollicutes bacterium D7]
 gi|229383380|gb|EEO33471.1| ATP-dependent deoxyribonuclease subunit A [Coprobacillus sp. D7]
          Length = 1233

 Score =  323 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 157/953 (16%), Positives = 316/953 (33%), Gaps = 114/953 (11%)

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAK 131
               +     K    +  N      ++K       +    + +       +     +T  K
Sbjct: 305  LFNEDNELYKKEYNRLKNNIIKFYRDKFNDIV--YDDFDEFKLTLSTSLEPLEKLITYLK 362

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                 Y++ K  + +LDF DL  N  +LL+ +     + Y   Q++  I+IDE QDT+ I
Sbjct: 363  QFKQAYQDYKLAHNLLDFNDLEANALELLEPKYGIVTLLY---QQLKEIMIDEYQDTNQI 419

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q  +I  + +        H      F VGD KQSIY F  A+P+    +         N 
Sbjct: 420  QETLINKIAD-------LHEPKINRFMVGDMKQSIYRFREADPEIFNEKYLTF-----NL 467

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENA----QGLSEDSTTTIRHRSSRIGQVGT 307
              K   I+L  ++RS   +L  V+ +F+   +          D +  + +   R      
Sbjct: 468  LPKTKRIDLKFNYRSNKIVLDSVNYIFNQIMDKDIGGLDYYLDESAKLNYDFLRKEGAKE 527

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTISNMIGT-DTIF 363
            ++   +V ++   + + +    +    S       + A + A+ +A  I +MIG  +   
Sbjct: 528  LEDLPEVTAKASQRLDEEARFTSEVILSYQTGTISNDAELEAKIVAKKIQDMIGHLELDN 587

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
             NG KR+   KDI+VL+R  +       +     N + I               I +L+ 
Sbjct: 588  FNGTKRLADYKDIVVLMRSTRSFIAFKKIF----NKFNIPSHIVLSQGFLQAPEIINLVN 643

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN---CGISK 480
            + +   ++ DD++F  +LK         + F    +  ET ++++    +          
Sbjct: 644  VLKAFNNRLDDIAFTSLLKGNYVISHFSENFLAQIKIDETISMFDNCINYLEKKLDNYEA 703

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRN 539
             +  I Y  ++ +     S  +     L          S   G + +  ++  +      
Sbjct: 704  LETFINYYQDMRNYFNSHSIKESLMKFLEDSNYLPFLASLVNGPQRVANIELMIQKLDEM 763

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              +S +++     ++      +  A  +  + N V  MT+H +KGLE P+VF+ +  ++ 
Sbjct: 764  HDDSLNTITTKFDDMINNGVNLSPAMVSSNDDNVVSFMTIHKSKGLEFPIVFVSNMQNKF 823

Query: 598  FSHKHIKKMHIMPSLNDD-------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  +++     L             P      +  N     +          E  R+
Sbjct: 824  NQQDARERIISDKKLGIAIRPRVKCDLEPYQDVIVEYENKYRKVIATAQTSEAINEEMRI 883

Query: 651  LYVGMTRA------------------------------------SDQLIICKHSNTSN-- 672
             YV +TRA                                     D++I+  ++   N  
Sbjct: 884  FYVALTRASQKLIMTGLIKEPQDLIKWQKYVINNSEDSMINPRCKDKVILYHNARKQNSY 943

Query: 673  -------------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                               +K+       D + +    + +   I     + ++     +
Sbjct: 944  LDWLGISLMSHSNIINQGLKKELLDHDQTDDLVNEIKQNFQTILIHQNKHLIQENTKHSK 1003

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--- 770
            +S     +  +E +  +    D              +   P  L  S   T+   +    
Sbjct: 1004 FSIKILSHHDVEEQIIVSNKSDTILDLSSYHRYSNFEYPYPTNLEKSIAVTRKIEDGDRS 1063

Query: 771  ------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY-KN 823
                  E   S      RG IIH +L+ +         + +      N     A +    
Sbjct: 1064 FKDISYELDDSPVDAGTRGTIIHSVLEHLDIDVHLDLSDNLNKLKQANLYDNEAWQLIDK 1123

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
                +   + +P+    ++ D         + +  +   II G  D + I    I I +Y
Sbjct: 1124 YQQHLENFITSPVYQLMVNADYL---YREKEFSMLENGQIIHGIFDVVCIKDNQITIIDY 1180

Query: 884  KTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            KT +      +  +   H  Q+  Y+KIL   +P  ++  ++ Y+   K   I
Sbjct: 1181 KTDNLNKNTSKEILISLHKPQMDYYKKILARVFPQANIQAIVYYLYINKYVTI 1233


>gi|167754673|ref|ZP_02426800.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402]
 gi|167705505|gb|EDS20084.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402]
          Length = 1233

 Score =  323 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 157/953 (16%), Positives = 316/953 (33%), Gaps = 114/953 (11%)

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAK 131
               +     K    +  N      ++K       +    + +       +     +T  K
Sbjct: 305  LFNEDNELYKKEYNRLKNNIIKFYRDKFNDIV--YDDFDEFKLTLSTSLEPLEKLITYLK 362

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                 Y++ K  + +LDF DL  N  +LL+ +     + Y   Q++  I+IDE QDT+ I
Sbjct: 363  QFKQAYQDYKLAHNLLDFNDLEANALELLEPKYGIVTLLY---QQLKEIMIDEYQDTNQI 419

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q  +I  + +        H      F VGD KQSIY F  A+P+    +         N 
Sbjct: 420  QETLINKIAD-------LHEPKINRFMVGDMKQSIYRFREADPEIFNEKYLTF-----NL 467

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENA----QGLSEDSTTTIRHRSSRIGQVGT 307
              K   I+L  ++RS   +L  V+ +F+   +          D +  + +   R      
Sbjct: 468  LPKTKRIDLKFNYRSNKIVLDSVNYIFNQIMDKDIGGLDYYLDESAKLNYDFLRKEGAKE 527

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTISNMIGT-DTIF 363
            ++   +V ++   + + +    +    S       + A + A+ +A  I +MIG  +   
Sbjct: 528  LEDLPEVTAKASQRLDEEARFTSEVILSYQTGTISNDAELEAKIVAKKIQDMIGHLELDN 587

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
             NG KR+   KDI+VL+R  +       +     N + I               I +L+ 
Sbjct: 588  FNGTKRLADYKDIVVLMRSTRSFIAFKKIF----NKFNIPSHIVLSQGFLQAPEIINLVN 643

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN---CGISK 480
            + +   ++ DD++F  +LK         + F    +  ET ++++    +          
Sbjct: 644  VLKAFNNRLDDIAFTSLLKGNYVISHFSENFLAQIKIDETISMFDNCINYLEKKLDNYEA 703

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRN 539
             +  I Y  ++ +     S  +     L          S   G + +  ++  +      
Sbjct: 704  LETFINYYQDMRNYFNSHSIKESLMKFLEDSNYLPFLASLVNGPQRVANIELMIQKLDEM 763

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              +S +++     ++      +  A  +  + N V  MT+H +KGLE P+VF+ +  ++ 
Sbjct: 764  HDDSLNTITTKFDDMINNGVNLSPAMVSSNDDNVVSFMTIHKSKGLEFPIVFVSNMQNKF 823

Query: 598  FSHKHIKKMHIMPSLNDD-------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  +++     L             P      +  N     +          E  R+
Sbjct: 824  NQQDARERIISDKKLGIAIKPRVKCDLEPYQDVIVEYENKYRKVIATAQTSEAINEEMRI 883

Query: 651  LYVGMTRA------------------------------------SDQLIICKHSNTSN-- 672
             YV +TRA                                     D++I+  ++   N  
Sbjct: 884  FYVALTRASQKLIMTGLIKEPQDLIKWQKYVINNSEDSMINPRCKDKVILYHNARKQNSY 943

Query: 673  -------------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                               +K+       D + +    + +   I     + ++     +
Sbjct: 944  LDWLGISLMSHSNIINQGLKKELLDHDQTDDLVNEIKQNFQTILIHQNKHLIQENTKHSK 1003

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--- 770
            +S     +  +E +  +    D              +   P  L  S   T+   +    
Sbjct: 1004 FSIKILSHHDVEEQIIVSNKSDTILDLSSYHRYSNFEYPYPTNLEKSIAVTRKIEDGDRS 1063

Query: 771  ------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY-KN 823
                  E   S      RG IIH +L+ +         + +      N     A +    
Sbjct: 1064 FKDISYELDDSPVDAGTRGTIIHSVLEHLDIDVHLDLSDNLNKLKQANLYDNEAWQLIDK 1123

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
                +   + +P+    ++ D         + +  +   II G  D + I    I I +Y
Sbjct: 1124 YQQHLENFITSPVYQLMVNADYL---YREKEFSMLENGQIIHGIFDVVCIKDNQITIIDY 1180

Query: 884  KTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            KT +      +  +   H  Q+  Y+KIL   +P  ++  ++ Y+   K   I
Sbjct: 1181 KTDNLNKNTSKEILISLHKPQMDYYKKILARVFPQANIQAIVYYLYINKYVTI 1233


>gi|27468508|ref|NP_765145.1| ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|293367781|ref|ZP_06614430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|38604841|sp|Q8CRT9|PCRA_STAES RecName: Full=ATP-dependent DNA helicase pcrA
 gi|27316055|gb|AAO05189.1|AE016749_135 ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228]
 gi|291318120|gb|EFE58517.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329726871|gb|EGG63329.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU144]
 gi|329734740|gb|EGG71046.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU045]
          Length = 729

 Score =  323 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 120/715 (16%), Positives = 225/715 (31%), Gaps = 128/715 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             +  + + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKARVEHLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKSENIDSKRFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +  +         +   +   Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 TLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST +IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKHNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     +  +        +       A  
Sbjct: 307 ---------------------LW-------TANSGGDKIQYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I     +            +  ++ +L R    + ++            I      
Sbjct: 332 VVKEIMKHQRSGK----------KYSEMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK          + I  LI   +F    +    +L     R        
Sbjct: 438 DALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVDEVLQKSGYRDMLDREQS 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ LDEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQNGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                EE  R+ YV +TRA + L I   +      +S        + +   +   
Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLD 640


>gi|223044036|ref|ZP_03614076.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14]
 gi|222442579|gb|EEE48684.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14]
          Length = 731

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 119/715 (16%), Positives = 225/715 (31%), Gaps = 128/715 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLVEKDVSPYNILAITFTNKAAKEMKERVEQLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +         +   +   Y+    +N  LDF+DLI+ T +L ++   +  
Sbjct: 148 KNELKTPDDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPDA-- 205

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST +IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     +  +        +       A  
Sbjct: 307 ---------------------LW-------TANTGGDKIQYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  +  D+ +L R    + ++            I      
Sbjct: 332 VVKEIMKHQRNGK----------KYSDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYAVQSNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F    +    +L     R        
Sbjct: 438 DALGEVDFIGLSKKVTQECINFYETITHLIKEQEFLEISEIVEEVLKKSGYRDMLEREQT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ LDEF++     E+N+    Q LI+ L           +   + V +MT+H+
Sbjct: 498 LESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQSGVTMMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                EE  R+ YV +TRA + L +   +      +S        + +       
Sbjct: 586 DDHEMEEERRICYVAITRAEELLYVTNTTTRMLFGRSQSNMPSRFLKEIPEELLE 640


>gi|257066035|ref|YP_003152291.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
 gi|256797915|gb|ACV28570.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
          Length = 1121

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 149/891 (16%), Positives = 306/891 (34%), Gaps = 120/891 (13%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            ++      +  + + K       +       K          L K     Y   K++   
Sbjct: 289  KDTRDLYKEDIKNVAKFVTNTDSLTMELFAKKEEDLLSEINVLVKDFMKVYRRLKEEKAY 348

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            LDF D+     DL+   +     R K+ +   +I  DE QD++ IQ  +I  L  +    
Sbjct: 349  LDFSDMEHKFIDLIDIEEA----RNKLRETYKYIFFDEYQDSNEIQNYIIEKLKGED--- 401

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                     LF VGD KQSIY F  AEPK  L +     K       K   I+L  +FRS
Sbjct: 402  --------NLFFVGDVKQSIYGFRRAEPKLFLEKLEAYDKD-----DKSVRIDLNKNFRS 448

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              D+L   + +F                                     ++ +S  + + 
Sbjct: 449  QKDVLDFDNFIFDRLM---------------------------------TKEESDIDYRD 475

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                  F+   Q +      + I   I        +    +      +DI +L+R    +
Sbjct: 476  GGHRLNFNKNEQSAYERANIKVIDSKIREEDYLAKLIEEIRAMGYDYRDIAILLRSGGKS 535

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +     +      +I    +   +    + +   + L +++ + +DDL+ + +L+S +F
Sbjct: 536  YVYEEAFK----KAEIPFFNDISKVSFRAVEVTFFINLLKYLANPKDDLTLLSLLRSEIF 591

Query: 447  NFSEDDIFKICTQRHETETVYEYI-QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
            +F EDD+ +I            +         + K         +L ++    S ++F  
Sbjct: 592  DFDEDDLVEIRLSSDSYSFTKAFDEYDKDEEIVEKINDFKTIFADLTYVKNLLSLYEFAN 651

Query: 506  LILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELE------QYP 558
             +       +  ++R    + I+ ++ F++     ++ + + L   +  ++         
Sbjct: 652  YVFEKTGFYEYLLARDRASDRINNVESFIDIMDEYDRTNDNGLFGFLEFVDSLSINQSDN 711

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                R  S   + VRIMT+H +KGLE PVV L D G +  +    + +     L     +
Sbjct: 712  IQTTRELSEAEDLVRIMTIHKSKGLEFPVVILADCGKRFNNKHLREPIVFDDDLGIGINL 771

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
              +  + +  +   + +   + K  ++E  R+LYV MTRA + L I    N     +   
Sbjct: 772  SDYENKLRFSSLRKNLINDKITKENKKEEMRILYVAMTRAEEMLFITGERNLKTVGRLKG 831

Query: 679  -------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
                    T+ D +      D+  +++      N  + +A        +       + I 
Sbjct: 832  RIDFLNMSTYMDWILSILSRDKVSEELFEEYETNALDGLASLEVIEESDPIDKFESKDIT 891

Query: 732  QLMDEQKIPKKLF----------SPIKNDINEPYILNPSTIDTKGKTNLE---------- 771
              +  + + ++++           P ++   E    + + I      +L+          
Sbjct: 892  DFLKSEDVNQEIYNKLKQIFDSPYPYEDQTRESIKRSVTEISKDFDPSLDGYRLPNYEEN 951

Query: 772  ------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWP 817
                              +  ++G +IH++ Q +      K   K  I     +      
Sbjct: 952  ELAGDFRKANFIREEKSYKATDKGTMIHRIFQALDFKDYDKVSLKEEIDRLIREKRIEED 1011

Query: 818  AKEYKNLLLSITRLLENPMMTTA--MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
            + +  +L   I    E+P +      + +   E S         +D  ++G+ID I    
Sbjct: 1012 SLDLVDL-DKILGFFEDPFIKDISQKATNIRKEESFLMTY----EDYYVNGQIDLIFEID 1066

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
              + + ++KT     + +      +  Q+ IY + ++ S   K +   LIY
Sbjct: 1067 DKVILIDFKTDRTKRENL------YKKQIQIYRQAIEKSL-GKKVETSLIY 1110


>gi|251809891|ref|ZP_04824364.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874545|ref|ZP_06283430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135]
 gi|251806556|gb|EES59213.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296684|gb|EFA89193.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135]
          Length = 729

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 120/715 (16%), Positives = 225/715 (31%), Gaps = 128/715 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             +  + + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMNARVEHLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKSENIDSKRFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +  +         +   +   Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 TLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST +IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKHNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     +  +        +       A  
Sbjct: 307 ---------------------LW-------TANSGGDKIQYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I     +            +  ++ +L R    + ++            I      
Sbjct: 332 VVKEIMKHQRSGK----------KYSEMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK          + I  LI   +F    +    +L     R        
Sbjct: 438 DALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVDEVLQKSGYRDMLDREQS 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ LDEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQNGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                EE  R+ YV +TRA + L I   +      +S        + +   +   
Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLD 640


>gi|57867385|ref|YP_189012.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A]
 gi|81673999|sp|Q5HN29|PCRA_STAEQ RecName: Full=ATP-dependent DNA helicase pcrA
 gi|57638043|gb|AAW54831.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A]
 gi|329734814|gb|EGG71119.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU028]
          Length = 729

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 120/715 (16%), Positives = 225/715 (31%), Gaps = 128/715 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             +  + + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKARVEHLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKSENIDSKRFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +  +         +   +   Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 TLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST +IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKHNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     +  +        +       A  
Sbjct: 307 ---------------------LW-------TANSGGDKIQYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I     +            +  ++ +L R    + ++            I      
Sbjct: 332 VVKEIMKHQRSGK----------KYSEMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK          + I  LI   +F    +    +L     R        
Sbjct: 438 DALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVDEVLQKSGYRDMLDREQS 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ LDEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQNGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                EE  R+ YV +TRA + L I   +      +S        + +   +   
Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLD 640


>gi|47092374|ref|ZP_00230164.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b
            H7858]
 gi|47019151|gb|EAL09894.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b
            H7858]
          Length = 1106

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 140/900 (15%), Positives = 300/900 (33%), Gaps = 115/900 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
            I +D+        + +   +  + E   P          L + + + + S      +   
Sbjct: 226  IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 284

Query: 68   LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
             + S    +  T + K+   +E  +++   ++  KK           R+  N     +  
Sbjct: 285  AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 344

Query: 124  LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L K    ++ E K++  VLDF DL      +L K + ++ +     ++   
Sbjct: 345  KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 404

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT+++Q  ++R +T       N+      LF VGD KQSIY F  AEP   + 
Sbjct: 405  VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
            + +  Q+    +G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458  KYQTYQQDGNGSGI---RIDLSQNFRSRKEVLDATNFIFHQLMDKHIAEIDYDAAAELTL 514

Query: 298  RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             +S         +L    +   +S+   +         S  +     + +R IA  I  M
Sbjct: 515  GASFPETTDMATELLLIDMKSVESETEDEL--------SPQELQKNQVESRAIAMKIKEM 566

Query: 357  IGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567  IDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
            +   +  ++AL + I +   D+    +L+SP+   +E+++ ++   +      + +  Y 
Sbjct: 623  ETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNEEELGQVRMAKKNGYFYDALLTYK 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                +    K    I+ ++    ++   +       I       +       G +    L
Sbjct: 683  DTTVSETADKMSDFIQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743  RALYDRANQYEKTSFRGLFRFVRFVERLEVRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV +     +        K  +                      +   + +   +   
Sbjct: 803  FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASNYRDIEKMIVYPTIMQQAMKQKKSREMI 862

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMV 685
             E  R+LYV +TRA ++LI+        +                    ++  + + D +
Sbjct: 863  AEEMRVLYVALTRAEEKLILTATVPDFEKTSKNWLQVAKEKETILPASTRAKAKCYLDWI 922

Query: 686  YDSFHNDERVKKI------------------------KLTNSINKDEWIAYEWSTHHPEN 721
             ++       K++                         LTN + K E + +  +    + 
Sbjct: 923  GNATIRHPNFKELLCEEMIQTLPTDMKLQIEIKTKEMFLTNELEKTETVNWLDNIKEHQP 982

Query: 722  TPLERE---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             P++                 E   ++  +Q + +        D      L         
Sbjct: 983  IPVKSPYKDEIQRYMNYEYQNEEATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSL 1042

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNL 824
                    +       G  +H L+Q +    +  +++ +       +   +    + K +
Sbjct: 1043 DRPKFLQQNKLSATEIGTAMHTLMQAVSLEHQPTKED-LEQLLQTMREKDILTEAQLKAI 1101


>gi|314934070|ref|ZP_07841433.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87]
 gi|313653181|gb|EFS16940.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87]
          Length = 731

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 120/715 (16%), Positives = 224/715 (31%), Gaps = 128/715 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVEQLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +         +   +   Y+    +N  LDF+DLI+ T +L ++   +  
Sbjct: 148 KNELKTPDDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPDA-- 205

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST +IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     +  +        +       A  
Sbjct: 307 ---------------------LW-------TANTGGDKIQYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  +  D+ +L R    + ++            I      
Sbjct: 332 VVKEIMKHQRNGK----------KYSDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYAVQSNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F    +    +L     R        
Sbjct: 438 DALGEVDFIGLSKKVTQECINFYETITHLIKEQEFLEISEIVEEVLQKSGYRDMLEREQT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ LDEF++     E+N+    Q LI+ L           +     V +MT+H+
Sbjct: 498 LESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVAYIDEADTQTGVTMMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKAD 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                EE  R+ YV +TRA + L I   +      +S        + +       
Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEELLE 640


>gi|170755491|ref|YP_001782895.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str.
           Okra]
 gi|169120703|gb|ACA44539.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str.
           Okra]
          Length = 738

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 107/575 (18%), Positives = 196/575 (34%), Gaps = 116/575 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K N  LDF+DLI  T +L K       +     ++  +I++DE QDT+ 
Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTN---KEVLEFYQRKFRYIMVDEYQDTNK 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L           S  R +  VGD+ Q IY + GA+   +L  ++        
Sbjct: 227 CQYELVKLLA----------SVHRNICVVGDDDQCIYEWRGADISNILNFEKDY------ 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             ++  +I+L  ++RS  +IL   ++V       +                         
Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +++   + + + +Y D           A+  A  I N+I             
Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFAASEIKNIIKDSKK-------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VL R    + +   +         I           D   IKDLMA  + I +
Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483
             DD+S   ++  P  +  +  + K+    +E +          + I   +   I+  + 
Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  ++  I      S       IL      ++  +    +    ++ L E ++     E
Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +   SL   + ++             N + V +MTVH+AKGLE PVVF+V   + +F 
Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                        EE  RL YV +TRA 
Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
           +QL I          ++      D V +   + + 
Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639


>gi|205372453|ref|ZP_03225266.1| PcrA [Bacillus coahuilensis m4-4]
          Length = 739

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/629 (17%), Positives = 211/629 (33%), Gaps = 115/629 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A  +   Y++  +KN  LDF+DLI+ T  L +K      +     ++  +I +DE QD
Sbjct: 171 QVASDVYIEYQKRLRKNQALDFDDLIMTTIQLFQK---VPEVLEYYQRKFQYIHVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ +   F          + L  VGD  QSIY + GA+   +L  ++   + 
Sbjct: 228 TNRAQYMLVKLMASRF----------QNLCVVGDSDQSIYGWRGADIANILSFEKDYPR- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   S+I L  ++RST  IL   + V     N +                      
Sbjct: 277 -------ASVIFLEQNYRSTKRILQAANHVIENNANRKPKK------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             ++ ++    +   +       A+ +A  I +M+ +        
Sbjct: 311 --LW-------TDNMEGEKITYYRGDNQQGE-------AQYVAGQIKSMVDSGKR----- 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  +I +L R    + +I  +         I           D   IKD++A  R 
Sbjct: 350 ----KLSEIAILYRTNAMSRVIEEVL----LKSNIQYSIVGGTKFYDRKEIKDILAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481
           + + +DD+S   ++  P        + KI         +++  + +              
Sbjct: 402 VANPDDDISLQRIINVPKRGVGSTSLDKIARYADDHNISMFRALGEADFIGVSPKVAKAL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 +       ++ S  +    IL     R    +    E    ++ +DEFL+ T  
Sbjct: 462 LEFRHLVLGYEQQQEYLSVTELVEEILEKSGYRDMLKAEKSIESQSRLENIDEFLSVTKS 521

Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            E  +   SL   +++L                + V +MT+H+AKGLE PVVFL+     
Sbjct: 522 FEDTSEDKSLVSFLTDLALVADIDSLDEDDLPQDAVTLMTLHSAKGLEFPVVFLMGMEEG 581

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           VF H                                                RL YVG+T
Sbjct: 582 VFPHSRSLMEEDEMEEE----------------------------------RRLAYVGIT 607

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI-NKDEWIAYEWS 715
           RA ++L +      +   ++N       + +          I+          +   +  
Sbjct: 608 RAEEELFLTNAQMRTLYGRTNMNPVSRFIGEIPDELLDNMAIESPAVSRPGSPFQRQQQP 667

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLF 744
           T  P + P+ +  T  + +  +   K + 
Sbjct: 668 TRRPVSRPISQTTTGGEKVGWKVGDKAVH 696


>gi|168183573|ref|ZP_02618237.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
 gi|237796712|ref|YP_002864264.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str.
           657]
 gi|182673320|gb|EDT85281.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
 gi|229262342|gb|ACQ53375.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str.
           657]
          Length = 738

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 108/587 (18%), Positives = 200/587 (34%), Gaps = 116/587 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K N  LDF+DLI  T +L K    +        ++  +I++DE QDT+ 
Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTNKEA---LEFYQRKFKYIMVDEYQDTNK 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L           S  R +  VGD+ Q IY + GA+   +L  ++        
Sbjct: 227 SQYELVKLLA----------SVHRNICVVGDDDQCIYEWRGADISNILNFEKDY------ 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             ++  +I+L  ++RS  +IL   ++V       +                         
Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +++   + + + +Y D           A+ +A  I  +I             
Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEIKKIIKDSEK-------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VL R    + +   +         I           D   IKDLMA  + I +
Sbjct: 346 -SFNDFSVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483
             DD+S   ++  P  +  +  + K+    +E +          + I   +   I+  + 
Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  ++  I      S       IL      ++  +    +    ++ L E ++     E
Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFE 520

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +   SL   + ++             N + V +MTVH+AKGLE PVVF+V   + +F 
Sbjct: 521 RESEDKSLGAFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                        EE  RL YV +TRA 
Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +QL I          ++      D V +   + +    I    + +K
Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKDNVNIAGEVATDK 651


>gi|238923773|ref|YP_002937289.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656]
 gi|238875448|gb|ACR75155.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656]
          Length = 763

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 126/695 (18%), Positives = 224/695 (32%), Gaps = 125/695 (17%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T ++  +              +       L +    +  I T+   +K       +  ++
Sbjct: 89  TCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKRLEIDTKMYKEKM--FLNVISSAK 146

Query: 105 DEFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
           DE I     +   T    K   A       +   Y+ A K+N  LDF+DL++ T +L K 
Sbjct: 147 DEMIDPIEFENRFTGDFVKRKQAL------VYKEYQNALKQNNALDFDDLLVKTVELFK- 199

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
             +   +     +   +I++DE QDT+ +Q+E+IR L   +          + L  VGD+
Sbjct: 200 --LDKEVLDYYQERFRYIMVDEYQDTNTVQFELIRLLAMKY----------KNLCVVGDD 247

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA    +L  ++  +           +I+L  ++RST +IL   + V S   
Sbjct: 248 DQSIYKFRGANIYNILNFEKHFE--------DAKVIKLEQNYRSTQNILDAANSVISNNV 299

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +                        LW    +         +  +             
Sbjct: 300 GRKDKR---------------------LWTDNGAGDRITFEQLESGF------------- 325

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  +A +I+ ++              + KD  VL R    + L             I
Sbjct: 326 -EEADYVARSIARLVRKGE---------ARYKDCAVLYRTNAQSRLFEEKFIA----ANI 371

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRH 461
                          IKD++A  + I +  DDL+   ++  P        I K+      
Sbjct: 372 PYKIVGGVNFYARKEIKDILAYLKTIDNGHDDLAVKRIINVPKRGIGATSINKVTDYAIE 431

Query: 462 ETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
           +    Y  ++             K +  + +I  L   A+  S       I+       +
Sbjct: 432 KGIDFYTALRYVDEVPGMARSAGKIKPFVMFIQSLRARAEMDSVSQLIQAIIDETGYVDE 491

Query: 517 FISRFGNEVI---DVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEV 572
             +   +E     + +DE +N  +  EQ     +L   + E+             N + V
Sbjct: 492 LKAEGTDEAEQRIENIDELINKAVDYEQGEENPTLSGFLEEVALVADIDG--LDENSDYV 549

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H+AKGLE P V+L      +F                                  
Sbjct: 550 VLMTLHSAKGLEFPNVYLAGMEDGLFPS-------------------------------Y 578

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN- 691
             +      S  EE  RL YVG+TRA + L I          ++        V +     
Sbjct: 579 MSITSDDATSEIEEERRLAYVGITRAKEHLTITSARMRMVRGETQFNKVSRFVKEIPREL 638

Query: 692 --DERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
              E  +  +  + I ++    Y  +    + TP 
Sbjct: 639 MSGEVYEPKRRDDDIERNSQSTYRKAKEAFKKTPT 673


>gi|315187403|gb|EFU21159.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 1149

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 150/839 (17%), Positives = 288/839 (34%), Gaps = 61/839 (7%)

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +D     +  + T +   +    +   E  KK+  +L F D++     LLK+      +R
Sbjct: 314  KDLVALLERREETSSLFGVLAEWHREVERFKKERNLLTFGDVMHLVLTLLKEE---KGVR 370

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT-----HSSPRTLFAVGDEKQS 225
                   + IL+DE QD + +Q +++  L E      +         P  LF VGDEKQS
Sbjct: 371  EFYKGRFDAILVDEFQDNNGLQRDLLYLLAERKGRCADGVPSFEDLEPGKLFVVGDEKQS 430

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F GA+    L  K        N      +I LP ++RS   +L  V+++        
Sbjct: 431  IYLFRGADVGVFLDLKER-----ANKSSHGEVIRLPHNYRSEPGLLEAVNRM---AGAFP 482

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                     +   + R G   T ++   V  + + +   +                 +  
Sbjct: 483  EEMRGGIEFLPAEAGREGAGFTPRIEAGVYVKGEEEARAEGRDLVDAG---------TAE 533

Query: 346  ARRIAYTISNMIGTDTI--FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
            A  +A  I   +    +        R ++  D+ VL+R   +        R     + I 
Sbjct: 534  AWWVAGRIRRWVEEGALMVRDGEGVRPVRYGDVAVLMRTGTNQLAFERAFRA----HGIP 589

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
               +    L       DL +     +   D LS+  +L+ PL   S+  I ++  +    
Sbjct: 590  YTASYSRNLFLEGPANDLFSWLFIAVYPHDLLSYAAVLRGPLVGLSDAGILRLIEREEGC 649

Query: 464  ETVY-EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRF 521
             ++  E  +        +++   +  H L               +      R   +    
Sbjct: 650  FSLPPEEARGVLGDEAERYERAREIYHWLASHRDRVVHERLLRYLWVDCGYRMVLLGQEH 709

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
             +  +   DE + F  R E+   +   + + E       +        + VRIMT+H AK
Sbjct: 710  LHPFLRFYDELVAFVRRWEERPLARCLDEVKEQLGRYGRVDVEEGGGGDAVRIMTIHAAK 769

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVV L   G++       K  + M       G        K  N +     + +K+
Sbjct: 770  GLEFPVVVLASCGAESRREGEGKMPYFMVEGAPVFGFEGDDGGKK-ENPLYRRAAEEVKR 828

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR----------TWYDMVYDSFHN 691
               EE  RLLYV +TRA   L++      +  KK              ++  ++++    
Sbjct: 829  REGEEMLRLLYVALTRAECHLLVTGEWRGAVGKKKGNGSEDGSKKTVLSFMSLLFEMTEE 888

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            +  V+       I   EW   E      E    +R  +  +    ++  +      +   
Sbjct: 889  EPEVRFRADREGIEGVEWRDPERIPGITEEDLRKRIGSGSRGGRWEEAARWYEEVDEGVG 948

Query: 752  N-EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR-KNFITSYC 809
               P  ++ S +  + +       +  +    G ++H+ + +   L +  R +  +    
Sbjct: 949  RVRPGAVSVSVLAGEWEAERRGEATG-KGAVFGSLVHRGMVLWARLGDEGRVREALRGEA 1007

Query: 810  TKNAKLWPAKEYKNLLLSITRLLE----NPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
                      E        T L+     + +    +   +  EV  + +     +  ++ 
Sbjct: 1008 LAWGGDGEWGEVDRACEEATALVRRWAGSEVGREVLGNGAGWEVECAAEW----EGWVVH 1063

Query: 866  GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
            G +D + +    + I+E+KT      E E     + AQL +Y  I    +P + + C+L
Sbjct: 1064 GVMDAVWVGDGVVRIYEWKT------EEEPDVERYRAQLFLYGLIASRVWPGRRVECVL 1116


>gi|291528122|emb|CBK93708.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 763

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 125/695 (17%), Positives = 224/695 (32%), Gaps = 125/695 (17%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T ++  +              +       L +    +  I T+   +K       +  ++
Sbjct: 89  TCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKRLEIDTKMYKEKM--FLNVISSAK 146

Query: 105 DEFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
           DE I     +   T    K   A       +   Y+ A K+N  LDF+DL++ T +L K 
Sbjct: 147 DEMIDPIEFENRFTGDFVKRKQAL------VYKEYQNALKQNNALDFDDLLVKTVELFK- 199

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
             +   +     +   +I++DE QDT+ +Q+E+IR L   +          + L  VGD+
Sbjct: 200 --LDKEVLDYYQERFRYIMVDEYQDTNTVQFELIRLLAMKY----------KNLCVVGDD 247

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA    +L  ++  +           +I+L  ++RST +IL   + V S   
Sbjct: 248 DQSIYKFRGANIYNILNFEKHFE--------DAKVIKLEQNYRSTQNILDAANSVISNNV 299

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +                        LW    +         +  +             
Sbjct: 300 GRKDKR---------------------LWTDNGAGDRITFEQLESGF------------- 325

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  +A +I+ ++              + KD  VL R    + L             I
Sbjct: 326 -EEADYVARSIARLVRKGE---------ARYKDCAVLYRTNAQSRLFEEKFIA----ANI 371

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRH 461
                          IKD++A  + I +  DDL+   ++  P        I K+      
Sbjct: 372 PYKIVGGVNFYARKEIKDILAYLKTIDNGHDDLAVKRIINVPKRGIGATSINKVTDYAIE 431

Query: 462 ETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
           +    Y  ++             K +  + +I  L   A+  S       I+       +
Sbjct: 432 KGIDFYTALRYVDEVPGMARSAGKIKPFVMFIQSLRARAEMDSVSQLIQAIIDETGYVDE 491

Query: 517 FISRFGNEVI---DVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEV 572
             +   +E     + +DE +N  +  EQ     +L   + E+             N + V
Sbjct: 492 LKAEGTDEAEQRIENIDELINKAVDYEQGEENPTLSGFLEEVALVADIDG--LDENSDYV 549

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H+AKGLE P V+L      +F                                  
Sbjct: 550 VLMTLHSAKGLEFPNVYLAGMEDGLFPS-------------------------------Y 578

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN- 691
             +      S  EE  RL YVG+TRA + L I          ++        V +     
Sbjct: 579 MSITSDDATSEIEEERRLAYVGITRAKEHLTITSARMRMVRGETQFNKVSRFVKEIPREL 638

Query: 692 --DERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
              E  +  +  + + ++    Y  +    + TP 
Sbjct: 639 MSGEVYEPKRRDDDLERNSQSTYRKAKEAFKKTPT 673


>gi|210608461|ref|ZP_03287837.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787]
 gi|210153037|gb|EEA84043.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787]
          Length = 741

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 115/638 (18%), Positives = 203/638 (31%), Gaps = 114/638 (17%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           +         +D   T + ++   A          +   YE+  + N  LDF+DL++ T 
Sbjct: 137 RNLLAAISSAKDELITPEEYELNAAGDFGKQKIAKVYKEYEKQLRANNALDFDDLLVKTV 196

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            L + +     +     +   +I++DE QDT+ +Q+E+IR L + +          R L 
Sbjct: 197 QLFQTQPE---VLDYYQERFRYIMVDEYQDTNTVQFELIRILAKKY----------RNLC 243

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIY F GA  K +L  + + +           +I+L  ++RST +IL   + V
Sbjct: 244 VVGDDDQSIYKFRGANIKNILNFEHVFE--------DAKVIKLEQNYRSTGNILNAANAV 295

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                  +  S                     LW              + +++ +     
Sbjct: 296 IKNNFGRKEKS---------------------LW-------TENGEGDKIAFSQFDSGYD 327

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +       A  I   I   +                 D  VL R    + +         
Sbjct: 328 E-------AEYIVGDIKEHVNNGIR---------TYNDHAVLYRTNAQSRMFEEKF---- 367

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               I               IKDL+A  + I + +DDL+   ++  P        I ++ 
Sbjct: 368 VTANIPYKIVGGINFYARKEIKDLLAYLKTIDNGKDDLAVRRIINVPKRGIGLTTINRVQ 427

Query: 458 T-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                   + YE ++           +SK +  +  I      A+  S  D    IL   
Sbjct: 428 ENALERGVSFYETLRAADLIPNIGRSVSKLESFVALIEHFKSEAKNMSICDLMQEILDMT 487

Query: 512 KGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSA 567
              +   S    E     + +DE +N     E++    +  L   LE+            
Sbjct: 488 GYIEDLKSEGDIEAETRIENIDELMNKIAAYEESCEDEMPTLSGFLEEVALVADIDSLDE 547

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           + + V +MT+H+AKGLE P V+L      +F                             
Sbjct: 548 DSDYVVLMTLHSAKGLEFPEVYLAGMEDGLFPSYMT------------------------ 583

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                   I     +  EE  RL YVG+TRA + L +          ++        + +
Sbjct: 584 --------ITSDDPTEVEEERRLCYVGITRARENLTLTCARRRMVRGETQYNKMSRFLKE 635

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              N      +   +     +  AY  +          
Sbjct: 636 IPVNLLSTGNLIEKDEKEVPKQNAYMQAKQAFRTQAFA 673


>gi|239947179|ref|ZP_04698932.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921455|gb|EER21479.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 847

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 172/637 (27%), Positives = 296/637 (46%), Gaps = 54/637 (8%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              F T+    +K+++++E+ +K P L  +L+K   E  ++ +     ++   T     L
Sbjct: 237 KEIFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL  +    W+ +K++ EINHIL+DE QDTS
Sbjct: 297 AHIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHEWLLHKLESEINHILVDEAQDTS 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHS----------------------SPRTLFAVGDEKQSIY 227
            +QW +I +L  +F       +                         T+F VGD+KQSI+
Sbjct: 357 PLQWNIITTLITEFNAADKPQNVIPWLDHGIQEKIKKDWIPLQARGMTIFIVGDDKQSIF 416

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF GA+           +   TNA +KF  I L  S+RS A+IL     V    ++    
Sbjct: 417 SFQGADLHNFSLVNEKLKANLTNANKKFKNITLEYSYRSCAEILQFTHNVLKNIKSDYPN 476

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              S   +   SS     G V +W  V S+       ++  W    D    +S+A +L  
Sbjct: 477 LFLSDNPL--ISSFRTHQGIVTVWPLVTSEKQ-----EELFWVLPEDYENSKSAADLLIE 529

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
           +I   I   I ++ I  +   R I  KD ++LVRKR +    +       +  K+ V  +
Sbjct: 530 KIVNFIKEQIESEEILPSTAHR-ISEKDFIILVRKRDE---FSKNLIKELSKAKLKVETS 585

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
           DR  L ++L I DLM++ +F+L  +DDL+   +LKSP+   +E  ++++   +++     
Sbjct: 586 DRINLKENLTIMDLMSVAKFVLLPDDDLNLAGLLKSPIIGMNEQQLYELLVNKNDNS--- 642

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
                     +S ++ +   ++ LI I +  +  +FF L +     R+   +  G++  +
Sbjct: 643 ------LWDNLSAYEEIYAKLNSLIEIYKISTVENFFDLAVNNLNLRENLNAYNGDDSNN 696

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           +++E L  +     +  +SLQ  ++  E     IK     + +++R+MTVH +KGLE+P+
Sbjct: 697 IINELLTLSKNYVNDIDNSLQGFVAWFENNDIYIKHDM-EHSDKIRVMTVHGSKGLEAPI 755

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V L D             +     + DD G   +   +      + +L +  K    +EY
Sbjct: 756 VILCD--------STTLPVSSNKFIWDDKGEMFFSANAADTPRFLQELKEAEKLKDLQEY 807

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
            RLLYV MTRA DQLIIC     SN+    +  WY++
Sbjct: 808 IRLLYVAMTRAKDQLIICGF---SNKAAIPENCWYEI 841


>gi|118443009|ref|YP_878906.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT]
 gi|118133465|gb|ABK60509.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT]
          Length = 760

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 120/651 (18%), Positives = 226/651 (34%), Gaps = 124/651 (19%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKY 132
           L ++   + NI  ++IN+   ++  K+ K +D  I   + +    K F+           
Sbjct: 119 LVKQCMKELNISDKDINE--KEIISKIGKQKDNLITAEEYKKRNEKDFRKNR-----IAD 171

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++  K +  LDF+DLI  T +L KK      +      +  +I++DE QDT+  Q
Sbjct: 172 VYLLYQKKLKNSNALDFDDLIFKTVELFKKHPE---VLEFYQNKFKYIMVDEYQDTNKTQ 228

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++++ L            + R +F VGD+ Q IY + GA+ K +L  ++   +      
Sbjct: 229 YQLVKMLAA----------AHRNIFVVGDDDQCIYQWRGADIKNILDFEKDYPE------ 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +++L  ++RS A+IL   + V       +                           
Sbjct: 273 --AKVVKLEENYRSKANILNAANTVIKHNSQRKNKVL----------------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
               +  ++   + + + +Y D              I+  I  +I  +            
Sbjct: 308 ----RTQNENGEKIKIYRAYSDMDEGL--------FISNEIKRLIKKENR---------S 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            KD  +L R    + +   +         I           D   IKD+ A  +FI + +
Sbjct: 347 YKDFAILYRTNAQSRVFEDVF----MKRDIPYRIIGGLKFYDRKEIKDITAYLKFINNLQ 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQHVI 485
           DD+S   ++  P        + KI    +  +          E I   +   IS      
Sbjct: 403 DDISLKRIINVPKRAIGAATVSKIQDFANYMDECMYSVLLDVENIPGLSKRSISSINKFT 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
             I+         S  +    IL +    ++       E    I+ + E ++  +  E  
Sbjct: 463 SLINGFTRTKDKVSVSNLIQEILESTGYMKELKDSNEIEDISRIENIKELVSAAVEFENT 522

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +   SL   + ++             + +   +MT+H+AKGLE PVVF+V   + +F   
Sbjct: 523 SEDKSLSAFLEKITLVSDVDNYD--EDTDTTVMMTLHSAKGLEFPVVFMVGMENGIFPG- 579

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                   +  EE  RL YVG+TRA +Q
Sbjct: 580 ---------------------------------AQSLENFAEMEESRRLCYVGITRAKEQ 606

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           L +   S      +S   +  D + +   N + + +   T S  K   +  
Sbjct: 607 LYMTSASTRKVFGRSVAYSESDFINEISPNLKEMVREGRTESAVKSSTVRL 657


>gi|241895871|ref|ZP_04783167.1| ATP-dependent deoxyribonuclease, subunit A [Weissella
            paramesenteroides ATCC 33313]
 gi|241870914|gb|EER74665.1| ATP-dependent deoxyribonuclease, subunit A [Weissella
            paramesenteroides ATCC 33313]
          Length = 1269

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 145/969 (14%), Positives = 313/969 (32%), Gaps = 155/969 (15%)

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA---SLTLA 130
             T+K  P+  I    +  +   LK++     +++  +        +  +       + L 
Sbjct: 301  FTKKHDPELKIAWDRVKDEREALKKRFTIVLEKYFVLDQAGLVLAIQGAGRVIDRLVKLT 360

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            K  +  +   K +  VLDF DL      ++ +      ++ ++ +    I++DE QDT+ 
Sbjct: 361  KDFSTDFLTEKLRRKVLDFNDLEHFALQIVSQE----KVKAELQERYTEIMVDEYQDTNQ 416

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +Q  ++  +T               LF VGD KQSIY F  A+P     +          
Sbjct: 417  LQEAILHEITS-----------GDNLFQVGDIKQSIYKFRQADPTLFAGKLATYPSD--- 462

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ- 309
                  +I L  +FRS  ++   ++ +F+   +      + T      +        +  
Sbjct: 463  --TISEVITLQENFRSQPNVTNFINYIFAQAMSRSLGDIEYTGEAELVAGADYYPEELPK 520

Query: 310  -----LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                 L+    +Q +S  + + ++      S    + A+   R  A  I  ++ +     
Sbjct: 521  KAELLLYLDDANQDESPADAEVDAEADTLASDAPYTKATGQIRLTALKIQELMQSKFEIF 580

Query: 365  NG---KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            +    KKR +   DI +LV  +     +  + R +     I ++ +          I  +
Sbjct: 581  DRQAQKKRPVNYGDITILVPTKGQNLDVLDVFREM----NIPIMIDGTENYFQTTEISVI 636

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---------------ETV 466
            M+  + I +   D+  V +L+SPL++  E+ +  I  Q  E                +T+
Sbjct: 637  MSFLQVIDNPHQDIPLVAVLRSPLYDIGENGLALIRAQTPEEDFYTAVKNLANDDEIDTI 696

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525
             +          ++ Q  +  +     +A           I               G + 
Sbjct: 697  GDISPALVKNTQTQVQRFLADLAVFRDLAVQNQIVTLLWAIYNRTGWLDYVGGLPSGAQR 756

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAK 581
               L    +     +++S+  L + I+ + Q     K       +   + V +MT+H +K
Sbjct: 757  QANLHALYDRASAYQKSSFVGLYQFINYVTQLQSHDKDLGEADANVAQDSVSLMTIHHSK 816

Query: 582  GLESPVVFLVDTGSQVFSHK-HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            GLE P+VFL++    + S +     + +                 K        + +  +
Sbjct: 817  GLEFPIVFLLNATRTMISQRETQGSIILDAQAGGGMNYVDLQHHLKLITPQHEYIAQVKR 876

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQRTW 681
            ++   E  R+LYV +TRA  QL I    +  ++                    +   +++
Sbjct: 877  QNAYAEQLRVLYVALTRAEQQLFIVGAYDNVDKLWQTWQQSAGVTEWMLPDTVRLAGKSF 936

Query: 682  YDMVYDSFHNDERVKKIKLT----------------------------NSINKDEWIAYE 713
             D++  +     +  +                                  IN  + +   
Sbjct: 937  MDLLGMTLIRHPQAPEQFAPLRGYDVNDVMQFDEIRTKTPKNAFAFDLEVINTQDLVNRV 996

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPK---KLFSPIKNDINEPYILNPSTIDTKGKTNL 770
             +     +  ++ ++  +   +E    +   +   P +         + S I    +   
Sbjct: 997  ANYQPLSDDIVDTKDVTETSAEENTDWQSVLQFAYPYETATRATAYQSVSEIKRLFEDPD 1056

Query: 771  ESL---------------------------------LSDNQTFNRGLIIHKLLQVIFTLP 797
             +                                   +   +   G   H ++Q +    
Sbjct: 1057 LAEGRQLLDRRLVTDDLAGLRMTDEELPEPDFMQESATRLSSAAIGTATHLVMQRLDLTK 1116

Query: 798  EHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLEN-PMMTTAM--SCDSYSEVSV 851
                +  I +   +  N KL   K    + +  I R   + P+    +  +     EV  
Sbjct: 1117 GVPTEVVIRTLIQQLVNEKLIDDKIAPLISVAKIGRFFNDSPLGKQMIQHADSLRREVPF 1176

Query: 852  SGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI-EHIPYTHIA 902
            S  ++             +++ G ID        I++F+YKT H   Q     +   +  
Sbjct: 1177 SLLLDAKRLYRAFDGDDKVLVHGIIDGYFQVDDEIWLFDYKTDHVSQQAATNILTKRYAG 1236

Query: 903  QLSIYEKIL 911
            QL+IY + L
Sbjct: 1237 QLNIYAQAL 1245


>gi|254423127|ref|ZP_05036845.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335]
 gi|196190616|gb|EDX85580.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335]
          Length = 784

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 122/684 (17%), Positives = 227/684 (33%), Gaps = 107/684 (15%)

Query: 7   LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETG--NPTILKKAQTLQQAS----QTQ 60
            +  ES     K    LP  +   +  Y+  +   G    T       + +      Q+ 
Sbjct: 79  FAEQESLARHGKPFHMLPEREQIQLRSYIYKTFIKGLWVGTFHALCARILRYDIEKYQSA 138

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             +      S F  +   +  K+I+   +N        +    +      +++  T   +
Sbjct: 139 DGQRWTKSFSIFDESDAQSLVKSIVISGLNLDDRKFNPR--SVRFAISNAKNQGFTPDQY 196

Query: 121 KSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           +             +   Y++    N  LDF+DLI     L ++ +    +     +   
Sbjct: 197 EQENPHFKGRTIAEVYRLYQKGLSANNALDFDDLIRMPVQLFRQNE---QVLDYWHRRFR 253

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HIL+DE QDT+  Q+++I+ L  +         + R++F VGD  QSIYSF  A+   ++
Sbjct: 254 HILVDEYQDTNRTQYDLIQLLATNGKGKGFDDWNNRSVFVVGDADQSIYSFRAADFTILM 313

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             +       T+   + ++++L  ++RST++IL V + +             +T      
Sbjct: 314 GFQTEFGDGLTDDETQ-TLVKLEENYRSTSNILDVANHLIENNTERIDKILRATR----- 367

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                                  +  + ++ A  +   I N+  
Sbjct: 368 ------------------------------GEGDSILCHRADNEAMEAEYVVGQIRNL-- 395

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   K   +Q +D  +L R    +  +  +       + I           D   I
Sbjct: 396 ------ELKNPELQWQDFAILYRTNAQSRAMEEVL----TRFGIPYRVVGGLRFYDRREI 445

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK----- 472
           KD++A  R  ++  D +S   ++ +P     +  +  +     E   +++E IQ      
Sbjct: 446 KDMLAYMRLAVNPADSVSLKRIINTPRRGIGKTTLDNLDKAASELGVSLWEIIQDETSVK 505

Query: 473 -FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDV 528
             A     K     + I           P +    +L          S+   E    I+ 
Sbjct: 506 TLAGRAGKKVTGFAEMIKGWQERVDSVGPAELVQDVLEQTGYIDSLKSKGTEEDETRIEN 565

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           + E  N  ++ E+ +      L++ L     +  R  S   N+V +MT+H +KGLE PVV
Sbjct: 566 IQELYNAVVQFEEENED--ATLLTFLANASLSTDRDDSDEGNQVTLMTLHASKGLEFPVV 623

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FLV     +F                                           +  EE  
Sbjct: 624 FLVGLEQGLFPS----------------------------------FRSLEDAAAIEEER 649

Query: 649 RLLYVGMTRASDQLIICKHSNTSN 672
           RL YVG+TRA D+L I        
Sbjct: 650 RLCYVGITRAQDRLFISHARERRT 673


>gi|323141943|ref|ZP_08076800.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp.
            YIT 12067]
 gi|322413578|gb|EFY04440.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp.
            YIT 12067]
          Length = 1140

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 142/963 (14%), Positives = 293/963 (30%), Gaps = 84/963 (8%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             E    + +     ++  + + +  ++              +              +   
Sbjct: 194  REDNLAEPYLKAKEELPALQQKLFAAVREVIEAREALGAKTKGRQTLTEAAGLLDEMQKQ 253

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
             L  +        +  +      L  +L   ++   ++       K        L + + 
Sbjct: 254  LLAPEPECSLLDASGVVKVSGKALAAELTNLKNLRQELNHVLLNAKGCDLVQDWLAVLQE 313

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              A     K++N +L  +DL +   + L+K +    +R K  +   +I++DE QDT+  Q
Sbjct: 314  FYACLSARKQENNILFNDDLDLLAIEHLQKNEA---LRQKYQERYKYIMVDEFQDTNERQ 370

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++I  L  +   G         LF VGD KQSIY F  A+     + K    +      
Sbjct: 371  RQLIYLLCGNKLDG------KNNLFIVGDVKQSIYRFRHADVSVFNKVKEDIAQ------ 418

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 + +  +FRST  I+   +  F    +           + H          V L +
Sbjct: 419  NAGQNLGMKTNFRSTQSIVESCNTAFCQLMD----LPKEEICLEHHEGANTGGAKVCLLQ 474

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  D     +++ W                 ++ A  I+  +  +      + R   
Sbjct: 475  VPYKSKDDDLGAKEDKW-----------------QKEAEAIAAYLQQELPKVEPQLRPGA 517

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +K   +L+R          + R     Y I+ V        +   + D++ L   + ++ 
Sbjct: 518  SK--AILLRAMTHC----EILRQTLQGYGINCVVVKGKGFYEQQEVLDILNLLAVLHNRY 571

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY---------EYIQKFANCGISKFQH 483
              L     L+S  F   +  + ++  Q    + ++         E          +    
Sbjct: 572  TSLELAGALRSNYFGLDDATLTQLFWQTENDKPLWDVLQAVGSGELQLNLQPEQQALAMQ 631

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQN 542
              + +  L   A   +  + F  +    K          G   +  + +      +  Q 
Sbjct: 632  AAERLRSLRQAAALMALPELFAQLWDELKPEFVLSQQENGPSKLANVKKLRRLAQQYCQT 691

Query: 543  SYSSLQELIS---ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              +SL E +    +L         A     + ++IMT+H +KGLE  +V L      V  
Sbjct: 692  KQASLAEWLQNVKDLRASSSKEPAATVQADDALQIMTIHNSKGLEFDLVILPQLDKSVKG 751

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                 K                  +      + +         +  +EE  RLLYV MTR
Sbjct: 752  DTASIKYFSGKEGEQGLLGIKVPDKEMQLQNSGVYELAKARDSELEEEESRRLLYVAMTR 811

Query: 658  ASDQLIICKHSNTSN------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            A  QL++                 + +  W  +      + ++ +       +   + ++
Sbjct: 812  AKKQLLMVGTVAEEKLPEAVIALPAAKGWWQQLQAVYEVDWDKQESSCPWVRLLCADALS 871

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
                    +         +  L       +  F+                        LE
Sbjct: 872  PAVVQQGVQQQLALEPLALAPLPAYAACGRTCFTASALQTYLHCQRQYYYQQVLAVPELE 931

Query: 772  SLLSDNQTFNR-----GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
              ++  Q         G I+HK L++                  + A    A + K++  
Sbjct: 932  QTVAGEQAHELPASVTGSIVHKALELYNGYNAEAVFAIA---LDEFAPGAAATQAKSMFD 988

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKT 885
                 + + +  +        E+     +          G ID +      N+ I +YKT
Sbjct: 989  ---AYISSDLYKSLPKKQ-KRELEFVQPLQQELAA---EGVIDLLAFDEDDNMIIVDYKT 1041

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL-LIYVSEPKVFIIPQNK--LNK 942
                  E + +   +  QL++Y+   +  YP K +VC  L ++    V+ +P +K  L +
Sbjct: 1042 GTPP--EPDEVKLGYAYQLALYKDAAEKLYPGKRVVCAELHFLQNMSVWQLPLDKSYLQE 1099

Query: 943  AFA 945
            A  
Sbjct: 1100 AIE 1102


>gi|254517672|ref|ZP_05129728.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
 gi|226911421|gb|EEH96622.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
          Length = 749

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 99/576 (17%), Positives = 201/576 (34%), Gaps = 116/576 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++  K+N  LDF+DLI  T +L K             ++  +I++DE QDT+ 
Sbjct: 180 ADVYEMYQKRLKENNALDFDDLIFKTVELFKHD---KETLEFYQRKFQYIMVDEYQDTNK 236

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+E+IR L + +          + +  VGD+ Q IY + GA+ + +L  ++        
Sbjct: 237 VQYELIRLLADKY----------KNVCVVGDDDQCIYQWRGADIRNILDFEKDYP----- 281

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RS  +IL   + V     N +                         
Sbjct: 282 ---DAKVIKLEQNYRSKGNILDAANVVIVNNANRKSKVL--------------------- 317

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + + +   + + + +Y DS   +         +A  I+ +   +          
Sbjct: 318 ------RTEQESGNKIKIYRAYSDSDEGD--------FVATQINKIKEEENK-------- 355

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  +L R    + +     R       I           D   IKD+++  + +++
Sbjct: 356 -SYKDFAILYRTNAQSRIFEESLR----RKAIPYKILGGTRFYDRKEIKDMISYLKVLVN 410

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISKFQH------ 483
             D +S   ++  P     +  + K +         +++ +    N      ++      
Sbjct: 411 PTDSISLRRIINVPKRGIGDATVNKVVDFADDYELPLWDALSTVRNIPTLTARNCGGIEI 470

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            ++ + + + +++          IL       +       E    I+ L E ++  +  E
Sbjct: 471 FMEMMDKFMEMSEIMPVSTLIETILKETGYISELEKSKEIEDKSRIENLKELVSDAVDFE 530

Query: 541 QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           ++S    + L + LE+              + + +MTVH+AKGLE PVVF+V   + +F 
Sbjct: 531 RSSED--KSLSAYLEKVSLVQDTDKLQEEEDTIVLMTVHSAKGLEFPVVFMVGMENGIFP 588

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                     +  EE  RL YVG+TRA 
Sbjct: 589 GNASF----------------------------------ESDAEMEESRRLCYVGITRAK 614

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +QL +          ++      D + +   + +  
Sbjct: 615 EQLFMTSAEVRRQFGRTVAYPQSDFIAEIKGDLKEY 650


>gi|82751561|ref|YP_417302.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
 gi|82657092|emb|CAI81529.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122]
          Length = 730

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ Q L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +         +   + + Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++   +         + I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +  N ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + +D+ +L R    + ++            +      
Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + K+         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F   H+    +L     R+       
Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                +E  R+ YV +TRA + L I   ++     +         + +   
Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636


>gi|291525748|emb|CBK91335.1| Superfamily I DNA and RNA helicases [Eubacterium rectale DSM 17629]
          Length = 763

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 126/695 (18%), Positives = 224/695 (32%), Gaps = 125/695 (17%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T ++  +              +       L +    +  I T+   +K       +  ++
Sbjct: 89  TCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKRLEIDTKMYKEKM--FLNVISSAK 146

Query: 105 DEFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
           DE I     +   T    K   A       +   Y+ A K+N  LDF+DL++ T +L K 
Sbjct: 147 DEMIDPIEFENRFTGDFVKRKQAL------VYKEYQNALKQNNALDFDDLLVKTVELFK- 199

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
             +   +     +   +I++DE QDT+ +Q+E+IR L   +          + L  VGD+
Sbjct: 200 --LDKEVLDYYQERFRYIMVDEYQDTNTVQFELIRLLAMKY----------KNLCVVGDD 247

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA    +L  ++  +           +I+L  ++RST +IL   + V S   
Sbjct: 248 DQSIYKFRGANIYNILNFEKHFE--------DAKVIKLEQNYRSTQNILDAANSVISNNV 299

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +                        LW    +         +  +             
Sbjct: 300 GRKDKR---------------------LWTDNGAGDRITFEQLESGF------------- 325

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  +A +I+ ++              + KD  VL R    + L             I
Sbjct: 326 -EEADYVARSIARLVRKGE---------ARYKDCAVLYRTNAQSRLFEEKFIA----ANI 371

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRH 461
                          IKD++A  + I +  DDL+   ++  P        I K+      
Sbjct: 372 PYKIVGGVNFYARKEIKDILAYLKTIDNGHDDLAVKRIINVPKRGIGATSINKVTDYALE 431

Query: 462 ETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
           +    Y  ++             K +  + +I  L   A+  S       I+       +
Sbjct: 432 KGIDFYTALRYVDEVSGMARSAGKIKPFVMFIQSLRARAEMDSVSQLIQAIIDETGYVDE 491

Query: 517 FISRFGNEVI---DVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEV 572
             +   +E     + +DE +N  +  EQ     +L   + E+             N + V
Sbjct: 492 LKAEGTDEAEQRIENIDELINKAVDYEQGEENPTLSGFLEEVALVADIDG--LDENSDYV 549

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H+AKGLE P V+L      +F                                  
Sbjct: 550 VLMTLHSAKGLEFPNVYLAGMEDGLFPS-------------------------------Y 578

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF--- 689
             +      S  EE  RL YVG+TRA + L I          ++        V +     
Sbjct: 579 MSITSDDATSEIEEERRLAYVGITRAKEHLTITSARMRMVRGETQFNKVSRFVKEIPREL 638

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
              E  +  +  + I ++    Y  +    + TP 
Sbjct: 639 MAGEVYEPKRRDDDIERNSQSTYRKAKEAFKKTPT 673


>gi|330685592|gb|EGG97238.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU121]
          Length = 730

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 121/712 (16%), Positives = 224/712 (31%), Gaps = 128/712 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             +  + + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKARVEQLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +  +         +   +   Y+    +N  LDF+DLI+ T +L ++   +  
Sbjct: 148 KNELKTPEDAQKEANDYHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPEA-- 205

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +I+ L   F          + L  VGD  QSIY 
Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLIKLLANKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +                I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYP--------DAKTIFLEQNYRSTKTILNAANEVIKNNTERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     + ++        +       A  
Sbjct: 307 ---------------------LW-------TANTGGDKINYYEATTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  +  D+ +L R    + ++            I      
Sbjct: 332 VVREIMKHQRNGK----------KYSDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGVGPSSVEKIQTYAVQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK          + I  LI   +F    +    +L     R        
Sbjct: 438 DALGEVDFIGLSKKVTQECIAFYEMIQNLIKEQEFLEISEIVEEVLVKSGYRDMLDREQT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ LDEF++     E+N+    Q LI+ L           +   + V +MT+H+
Sbjct: 498 LESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTESGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                EE  R+ YV +TRA + L I   +      +S        + +   +
Sbjct: 586 DDHEMEEERRICYVAITRAEETLYITNATTRMLFGRSQSNMPSRFLKEIPED 637


>gi|89097085|ref|ZP_01169976.1| PcrA [Bacillus sp. NRRL B-14911]
 gi|89088465|gb|EAR67575.1| PcrA [Bacillus sp. NRRL B-14911]
          Length = 746

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 115/660 (17%), Positives = 214/660 (32%), Gaps = 116/660 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + ++ K  D +  L        ++ D     K          +A  +   Y+   +KN  
Sbjct: 132 KNLDPKKYDPRAILGSISSAKNELIDPEEYAKAAG--GYFEQIASDVYTEYQRRLRKNQA 189

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ + + F   
Sbjct: 190 LDFDDLIMTTIQLFQR---VPEVLEYYQRKFQYIHVDEYQDTNRAQYMLVKLMADRF--- 243

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                  + L  VGD  QSIY + GA+   +L  ++  Q            I L  ++RS
Sbjct: 244 -------KNLCVVGDSDQSIYRWRGADIANILSFEKDYQN--------ARTILLEQNYRS 288

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  IL   ++V +   N +  +  +     ++                            
Sbjct: 289 TKRILLAANEVIAKNLNRKAKNLWTENAEGNKLFHY------------------------ 324

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                      +  S     + +A  I  M+ +            +  +I +L R    +
Sbjct: 325 -----------RADSEQGEGQFVAGKIKEMVDSGKR---------KYSEIAILYRTNAQS 364

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            ++  +         I           D   IKD++A  R I + +DD+S   ++  P  
Sbjct: 365 RVMEEVL----LKSNIEYSIVGGIKFYDRKEIKDILAYLRLIANPDDDISLQRVINVPKR 420

Query: 447 NFSEDDIFKI-CTQRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSP 500
                 + KI    +    T+Y+ +                      I     + ++ S 
Sbjct: 421 GIGSGSVDKIANFAQMHDMTMYQALDALDLIGLSPKITKAATEFRDLIRSYEQMQEYLSV 480

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556
            +    +L     R    +    E     + +DEFL+ T   E  +   +L   +++L  
Sbjct: 481 TELVEEVLEKSGYRDMLKAEKSIEAQSRLENIDEFLSVTKNFEDGSEDKTLVAFLTDLAL 540

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                K        + V +MT+H+AKGLE PVVFL+     VF H               
Sbjct: 541 VADIDKLEDDGTKTDSVVLMTLHSAKGLEFPVVFLIGLEEGVFPHSRSLMEEAEMEEE-- 598

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                            RL YVG+TRA ++L I      +   +
Sbjct: 599 --------------------------------RRLAYVGITRAEEELYITNAQMRTLFGR 626

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
           +N       + +   +     + K  +        A              R+  +K  + 
Sbjct: 627 TNMNPPSRFIQEIPADLIEGIEPKKASPSPFGSPAAGGRQPSSSAPRQAMRKAVVKPAVA 686


>gi|168186071|ref|ZP_02620706.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str.
           Eklund]
 gi|169296014|gb|EDS78147.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str.
           Eklund]
          Length = 760

 Score =  321 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 117/637 (18%), Positives = 223/637 (35%), Gaps = 124/637 (19%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKY 132
           L ++   + NI  ++IN+   ++  K+ K +D  I   + +    K F+           
Sbjct: 119 LVKQCMKELNISDKDINE--KEIISKIGKQKDNLITAEEYKKRNEKDFRKNR-----IAE 171

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++  K +  LDF+DLI  T +L KK      +      +  +I++DE QDT+  Q
Sbjct: 172 VYLLYQKKLKNSNALDFDDLIFKTVELFKKHPE---VLEFYQNKFKYIMVDEYQDTNKTQ 228

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++++ L           S+ R +F VGD+ Q IY + GA+ K +L  ++   +      
Sbjct: 229 YQLVKMLA----------SAHRNIFVVGDDDQCIYQWRGADIKNILDFEKDYPE------ 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +++L  ++RS A+IL   + V       +                           
Sbjct: 273 --AKVVKLEQNYRSKANILNAANTVIKNNSQRKDKVL----------------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
               +  ++   + + + +Y D              IA  I  +I  +            
Sbjct: 308 ----RTQNENGDRIKIYRAYSDMDEGI--------FIANEIKRIIKKENR---------S 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +D  +L R    + +   +         I           D   IKD+ A  +FI + +
Sbjct: 347 YRDFAILYRTNAQSRVFEDIF----MKRDIPYRIIGGLKFYDRKEIKDITAYLKFINNLQ 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQHVI 485
           DD+S   ++  P        + KI    +  +          E I   +   IS      
Sbjct: 403 DDISLRRIINVPKRAIGAATVTKIQDFANYMDECMYSVLLDVENIPGLSKRSISSINKFT 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
             I+         S  +    IL +    ++       E    I+ + E ++  +  E  
Sbjct: 463 SLINGFNRTKDKVSVSNLIQEILESTGYMKELKDSNEIEDISRIENIKELVSAAVEFENT 522

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +   SL   + ++             + +   +MT+H+AKGLE PVVF+V   + +F   
Sbjct: 523 SEDKSLSAFLEKITLVSDVDNYD--EDTDTTVMMTLHSAKGLEFPVVFMVGMENGIFPG- 579

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                   S  EE  RL YVG+TRA ++
Sbjct: 580 ---------------------------------AQSLENFSEMEESRRLCYVGITRAKER 606

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           L +   S      ++   +  D + +   N + + + 
Sbjct: 607 LYMTSASTRKVFGRTVAYSESDFISEISPNLKEMVRE 643


>gi|294495717|ref|YP_003542210.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219]
 gi|292666716|gb|ADE36565.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219]
          Length = 1018

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 154/1020 (15%), Positives = 331/1020 (32%), Gaps = 177/1020 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCI---- 62
           +  E  E I   +       VS  + Y   L  E      + +   L     +       
Sbjct: 61  AAGEMEERIENRIGESSGITVSTFHSYCNDLLKEFSLYAGINQGTRLISQEHSHVWGINN 120

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            + F   +     + +    +++  E   +  D     ++ Q+   +  D     +    
Sbjct: 121 IDSFGFENIAIPNRPYDLITSLL--EGVSQLHDHLVGPQELQEYVKRKLDENIDEQERDD 178

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            L    LA    +HY+E K+ +  +D++D+I     LL+  +V   +R +I    +++L+
Sbjct: 179 LLKLADLA-RFYSHYQEYKRDHNFMDYDDMISMVCRLLESNEV---VRNQIRNRYDYVLV 234

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q  +I  + +              L  V D+ Q IY F GA    + + + 
Sbjct: 235 DEFQDTNYAQLYLINLIAD-----------GTNLTCVADDDQCIYRFRGAYLSNIKQLQD 283

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                          I L  ++RS++ I+ +  ++ +     +  +  S           
Sbjct: 284 YY--------ASLEKIPLDRNYRSSSQIVQLSQQLIATNPEREDKTLHSH---------- 325

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                               + ++       D   +       A  +A  I  +I  +  
Sbjct: 326 ------------------NGDGEKIKVVKTPDDTSE-------ANWVADEIQRLIEEE-- 358

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   I   +I VL RKR D    +   +       I V       L ++  +++ +
Sbjct: 359 -------NIAPDEIFVLTRKRADGKKYSDALK----GKMIPVEYVGNLQLKNYPIVQEAL 407

Query: 423 ALGRFILSQEDD-LSFVCMLKSPLFNFSEDDIFKICTQRHETET------------VYEY 469
           A    +    ++ ++F  +L       SE D+ KI T   +               +  Y
Sbjct: 408 AYMHIVADPFNNGIAFARILA--REGVSEHDLQKINTMAKKLSRETELEGDGIYSVLQHY 465

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA--KKGRQQFISRFGNEVID 527
           +        +  + ++  ++ELI   +   P D    +L       + Q ++       +
Sbjct: 466 LDDVPIIQKALVKSILTRLNELIDYRKNHLPSDTVKYLLSEKTDLYKSQLLADTFTSRRN 525

Query: 528 --VLDEFLNFTLRNEQNSYSS-LQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGL 583
             +L+   +     E     S     +  LE      I    ++  N V++MT+H +KG 
Sbjct: 526 IHILNSLTSMVEDLELVDGGSEFARAVEYLELVFNLDIGDEETSEENTVKVMTIHQSKGK 585

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E+ VVF+ D   +    +  KK   +P   +                         K   
Sbjct: 586 EAKVVFVCDLADRHLPLRFTKKQFRVPRELEKGVQRDV----------------EDKILH 629

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY------------DMVYDSFHN 691
            EE  RL YV MTRA ++L +      +  K+  + + +            + +      
Sbjct: 630 LEEERRLAYVAMTRAREKLYLTFPEKYAGNKRGVKPSEFVTQLDYESNPLIEYIETDRLQ 689

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI--------------------- 730
           D      +      +DE++                E  +                     
Sbjct: 690 DTETVVTESPLKKKQDEYLRLMNMYAGQGQMKQALESLVVLTQLKEIEDKGNLAVFNIED 749

Query: 731 ---KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQT 779
                  D +++   +   +   ++     + S +    +  L+          +     
Sbjct: 750 FLKTTPRDIEELEALVNEEMPPLVDSDMRFSASKVRQYMECPLKFKYSNVLNIPIPQKTF 809

Query: 780 FNRGLIIHKLLQVIFTLP---EHKRKNFITSYCTK--NAKLWPAKEYK-NLLLSITRLLE 833
           F  G  +H + + +       +            +  +  ++ ++ ++   L  + ++LE
Sbjct: 810 FQTGTDVHSVFEQLSRYRMQGKSIDMELANRILDETWDGSVFDSQTHEQQELDRVRQMLE 869

Query: 834 NPMMTTAMSCDSYSE-VSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQ 891
                      + +E ++V  K N         G ID+I  + +    + +YKT    P 
Sbjct: 870 ---YWFEFEKSNVNETIAVEEKFNLKLDGAQFGGVIDRIDQTPEGEYIVIDYKTSK-SPL 925

Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV----SEPKVFIIPQNKLNKAFAEI 947
               +P     QL++Y + +++ Y    +   L+YV     + ++  + Q+++N     +
Sbjct: 926 SKNKMPED--VQLALYCQAVRERYGKYPVKAGLMYVNPNIRDLRLMDVNQSQINSVLDGV 983


>gi|239638038|ref|ZP_04678997.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603]
 gi|239596321|gb|EEQ78859.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603]
          Length = 730

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 121/712 (16%), Positives = 224/712 (31%), Gaps = 128/712 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             +  + + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKARVEQLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +  +         +   +   Y+    +N  LDF+DLI+ T +L ++   +  
Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPEA-- 205

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +I+ L   F          + L  VGD  QSIY 
Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLIKLLANKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +                I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYP--------DAKTIFLEQNYRSTKTILNAANEVIKNNTERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     + ++        +       A  
Sbjct: 307 ---------------------LW-------TANTGGDKINYYEATTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  +  D+ +L R    + ++            I      
Sbjct: 332 VVREIMKHQRNGK----------KYSDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGVGPSSVEKIQTYAVQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK          + I  LI   +F    +    +L     R        
Sbjct: 438 DALGEVDFIGLSKKVTQECIAFYEMIQNLIKEQEFLEISEIVEEVLVKSGYRDMLDREQT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ LDEF++     E+N+    Q LI+ L           +   + V +MT+H+
Sbjct: 498 LESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTESGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                EE  R+ YV +TRA + L I   +      +S        + +   +
Sbjct: 586 DDHEMEEERRICYVAITRAEETLYITNATTRMLFGRSQSNMPSRFLKEIPED 637


>gi|171463387|ref|YP_001797500.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
            STIR1]
 gi|171192925|gb|ACB43886.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
            STIR1]
          Length = 1173

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 173/976 (17%), Positives = 342/976 (35%), Gaps = 99/976 (10%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE----ERFSLLSSFFL 74
              W  P     +  ++++   +  +       Q L  A   +       E  S   + FL
Sbjct: 237  AAWNAPNAL--EDLQFLARCFQNSSAKDSDLLQYLLPAIACKECAGNVMEVASHFQTTFL 294

Query: 75   TQK-----------FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            T+               +K +     + +  +     +     F +  +      +F   
Sbjct: 295  TKDPKYRSNNDKALGEAKKYLEKMGESHRIDEYIAIKQHWGHTFEEYLEWQAEQNVFAIN 354

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
             A   L++ + AH    K+   V DF+DL +  + L+ K + +A+++ ++D +   IL+D
Sbjct: 355  EAWFALSQSMMAHANSQKENMRVRDFDDLEVGVSLLMGKSEHTAYLQSRLDAKYKQILVD 414

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT+ +QW+++R+    +  G +       +F VGD KQSIY F  A+P+  +   + 
Sbjct: 415  EFQDTNPLQWQILRA----WLAGYSEGDERPKVFIVGDPKQSIYRFRRADPRLFVSAAQ- 469

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS------TTTIRH 297
                  +     + IE   + R+  +I   V+ +F   +                  +  
Sbjct: 470  ----FLHQHHDAAYIEQDKTRRNAPEINNAVNAIFQGEQVPPDYPYSEQQTLWVAPDVGK 525

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTIS 354
             +      G + L   +      Q   +  ++        +             +A  I 
Sbjct: 526  PADVYAGQGEIYLLPLIAYAEQMQEPREGSAFDGAIADSSETVGVIQRQREGELVARLIK 585

Query: 355  NMIGTDTIFSNGK----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +I T  +          R  +A D L+LV++RK  P      R +K  Y+   +G    
Sbjct: 586  EIIATRRVADKEGGKEVWREARASDFLLLVKRRKYLPQYERALRNVKLAYESPRLGG--- 642

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             L + L I DL+AL   +++   DL    +L+SP+F F+E  + ++            + 
Sbjct: 643  -LLNTLEIDDLVALLTVLVTPRHDLPLAQVLRSPIFGFAEKQMQQLAVAMTSG-PYRSWW 700

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVI 526
                +   +  Q   +Y+    H+ +    HD   LI      R ++ +        +V+
Sbjct: 701  DALQDGKDATLQAAARYLKHWHHLGERLPVHDLLDLIYQEGDVRLKYAAVCQDLDRPQVL 760

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISE-------------------------LEQYPPTI 561
              LD FL   L  +   Y SL   I E                         L +     
Sbjct: 761  ANLDAFLEVALNQDGGQYPSLSRFIQEMNTKRRGDDDETPDEGDVDAASDDNLAEVDEEG 820

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            + +    H  VR+MT+H AKGLESP V ++D  +   +  +   +       + P     
Sbjct: 821  EMSEEDRHKRVRLMTIHGAKGLESPFVVILDANNTDTNVDYSGVLIDWVPQEESPSHLSL 880

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                    +  +++ +  KK  ++E   LLYV MTRA   L I   +        +    
Sbjct: 881  FTSKTL-TSPRAEINEAEKKIGEKENWNLLYVAMTRARQGLWISGDAQKPTTNNPSGLDK 939

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
                  +               ++  +      +T   E     +E T++  + +    +
Sbjct: 940  TSWYGKASK-----------AELSVYQVGEQVVATEKFEVIKPAQENTVEDFVLDWDPAQ 988

Query: 742  KLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEH 799
            +  + + +DI     +   S  D +       +L +      G   HKLL+ I       
Sbjct: 989  ESHAQMLSDIESGVTIEVFSGEDEQAGNPDPEILEE------GTNFHKLLEFITPDSANQ 1042

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
             +    +     N           L+  + ++L  P +   ++   + +      I+  +
Sbjct: 1043 NKPAMPSEQELMNWLGVDRGGANKLIAHVQKVLTTPELKHYLTSGEWVQAWNELDISSEQ 1102

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
                 S R+D++     ++ I +YK    +P+        +  QL  Y+  L     ++ 
Sbjct: 1103 GK---SYRMDRLVEFDNHLAIIDYK--LTIPEVGSEKYEKYRKQLQGYQAELTRIRKDRL 1157

Query: 920  LVCLLIYVSEPKVFII 935
                LI     ++  +
Sbjct: 1158 NKAYLISSR-GEIVEV 1172


>gi|15924895|ref|NP_372429.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927479|ref|NP_375012.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268378|ref|YP_001247321.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394440|ref|YP_001317115.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156980221|ref|YP_001442480.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253316914|ref|ZP_04840127.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006692|ref|ZP_05145293.2| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257426037|ref|ZP_05602459.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428710|ref|ZP_05605105.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431320|ref|ZP_05607696.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434038|ref|ZP_05610389.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436942|ref|ZP_05612984.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257793289|ref|ZP_05642268.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781]
 gi|258408883|ref|ZP_05681165.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763]
 gi|258421013|ref|ZP_05683944.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719]
 gi|258422982|ref|ZP_05685881.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635]
 gi|258430015|ref|ZP_05688385.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299]
 gi|258443467|ref|ZP_05691809.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115]
 gi|258445325|ref|ZP_05693516.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300]
 gi|258447889|ref|ZP_05696023.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224]
 gi|258453322|ref|ZP_05701307.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937]
 gi|269203558|ref|YP_003282827.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894572|ref|ZP_06302800.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117]
 gi|282904536|ref|ZP_06312421.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906309|ref|ZP_06314161.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909225|ref|ZP_06317041.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911530|ref|ZP_06319330.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914703|ref|ZP_06322488.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282917252|ref|ZP_06325007.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus D139]
 gi|282919740|ref|ZP_06327472.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282925144|ref|ZP_06332804.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282928078|ref|ZP_06335685.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102]
 gi|283771055|ref|ZP_06343946.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283958666|ref|ZP_06376112.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293507780|ref|ZP_06667622.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510282|ref|ZP_06668988.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M809]
 gi|293539337|ref|ZP_06672016.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295407286|ref|ZP_06817085.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819]
 gi|296275663|ref|ZP_06858170.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297246189|ref|ZP_06930040.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796]
 gi|54038823|sp|P64319|PCRA_STAAN RecName: Full=ATP-dependent DNA helicase pcrA
 gi|54041649|sp|P64318|PCRA_STAAM RecName: Full=ATP-dependent DNA helicase pcrA
 gi|13701698|dbj|BAB42991.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247677|dbj|BAB58067.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741447|gb|ABQ49745.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946892|gb|ABR52828.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722356|dbj|BAF78773.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257271180|gb|EEV03337.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274354|gb|EEV05866.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277969|gb|EEV08625.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257280964|gb|EEV11108.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283731|gb|EEV13856.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257787261|gb|EEV25601.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781]
 gi|257840330|gb|EEV64792.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763]
 gi|257842961|gb|EEV67379.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719]
 gi|257846769|gb|EEV70784.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635]
 gi|257849609|gb|EEV73577.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299]
 gi|257851352|gb|EEV75292.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115]
 gi|257855843|gb|EEV78767.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300]
 gi|257858821|gb|EEV81690.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224]
 gi|257864530|gb|EEV87273.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937]
 gi|262075848|gb|ACY11821.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282313102|gb|EFB43500.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316378|gb|EFB46755.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318879|gb|EFB49234.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus D139]
 gi|282321417|gb|EFB51743.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324539|gb|EFB54851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282326793|gb|EFB57090.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330506|gb|EFB60023.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282590142|gb|EFB95223.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102]
 gi|282595092|gb|EFC00059.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763059|gb|EFC03191.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117]
 gi|283459649|gb|EFC06740.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283471176|emb|CAQ50387.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283789706|gb|EFC28528.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817586|gb|ADC38073.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus
           04-02981]
 gi|290919872|gb|EFD96941.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094843|gb|EFE25111.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466646|gb|EFF09166.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus M809]
 gi|294967861|gb|EFG43891.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819]
 gi|297176896|gb|EFH36153.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796]
 gi|298695247|gb|ADI98469.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333570|gb|ADL23763.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|312437628|gb|ADQ76699.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312830278|emb|CBX35120.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129285|gb|EFT85279.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315193435|gb|EFU23832.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|329724791|gb|EGG61295.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 730

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ Q L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +         +   + + Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++   +         + I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +  N ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + +D+ +L R    + ++            +      
Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + K+         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F   H+    +L     R+       
Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                +E  R+ YV +TRA + L I   ++     +         + +   
Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636


>gi|228476304|ref|ZP_04061005.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119]
 gi|228269587|gb|EEK11093.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119]
          Length = 730

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 120/718 (16%), Positives = 229/718 (31%), Gaps = 128/718 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVEHLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFVGAISNL 147

Query: 111 RDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    M ++      +   + + Y+    +N  LDF+DLI+ T  L ++   +  
Sbjct: 148 KNELKTPEDAMKEANDFHSQMVATVYSGYQRQLSRNEALDFDDLIMKTIRLFERVPDA-- 205

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST  ILT  ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKTILTAANEVIKHNTERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +    ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANNGGEKIKYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I     +               D+ +L R    + ++            I      
Sbjct: 332 VVREIIKHRKSGK----------DYNDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R + +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIVANSNDDISLQRIINVPKRGIGPSSVDKIQRYALDNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK          + +  LI   +F    +    IL     RQ       
Sbjct: 438 DALGEVDFIGLSKKVTQECIQFYEMVQNLIKEQEFLEISEIVEEILEKSGYRQMLEREQT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+++    Q LI+ L           +   + V +MT+H+
Sbjct: 498 IESRSRLENIDEFMSVPKDYEKDTPLEEQSLINFLTDLSLVADIDEAQIDSGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                EE  R+ YV +TRA + L I   ++     +S        + +          
Sbjct: 586 DDHEMEEERRICYVAITRAEEVLYITHATSRMLFGRSQANLPSRFLKEIPEELLETPA 643


>gi|49484146|ref|YP_041370.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295428487|ref|ZP_06821114.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|68605635|sp|Q6GFF2|PCRA_STAAR RecName: Full=ATP-dependent DNA helicase pcrA
 gi|49242275|emb|CAG40982.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295127469|gb|EFG57108.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 730

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ Q L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +         +   + + Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++   +         + I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +  N ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + +D+ +L R    + ++            +      
Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + K+         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F   H+    +L     R+       
Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                +E  R+ YV +TRA + L I   ++     +         + +   
Sbjct: 586 GDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636


>gi|319399870|gb|EFV88117.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis FRI909]
          Length = 729

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 120/715 (16%), Positives = 225/715 (31%), Gaps = 128/715 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             +  + + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKARVEHLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +KE LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKEVLKSENIDSKRFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +  +         +   +   Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 TLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST +IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKHNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     +  +        +       A  
Sbjct: 307 ---------------------LW-------TANSGGDKIQYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  +  ++ +L R    + ++            I      
Sbjct: 332 VVKEIMKHQRGGK----------KYSEMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI       + +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYALQNSISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK          + I  LI   +F    +    +L     +        
Sbjct: 438 DALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVDEVLQKSGYKDMLDREQS 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ LDEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQNGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                EE  R+ YV +TRA + L I   +      +S        + +   +   
Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLD 640


>gi|225376675|ref|ZP_03753896.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans DSM
           16841]
 gi|225211558|gb|EEG93912.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans DSM
           16841]
          Length = 760

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 114/672 (16%), Positives = 222/672 (33%), Gaps = 116/672 (17%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           L +    + N+ T+   ++   L   + K++DE +    +  + +   S   +      +
Sbjct: 123 LMKDICKRLNVDTKIYKER--SLLAAISKAKDELVD--PQEFSLRAAASGDFAKRKQAEI 178

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y++A ++N  LDF+DLI+ T +L K     A +     +   +I++DE QDT+  Q+
Sbjct: 179 YREYQDALRRNNALDFDDLIVKTVELFKTD---AQVLDYYQERFRYIMVDEYQDTNTAQF 235

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+I  L   +          + L  VGD+ QSIY F GA    +L  ++   +       
Sbjct: 236 ELISILARKY----------KNLCVVGDDDQSIYKFRGANIYNILNFEKHFPEAV----- 280

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I+L  ++RST +IL   + V S     +  +                     LW  
Sbjct: 281 ---TIKLEQNYRSTQNILNAANGVISNNMGRKRKT---------------------LW-- 314

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                      ++  +  +     +       A  +A  I+  +                
Sbjct: 315 -----TDNEEGKKIGFKQFETGYEE-------AEYVAKDINACVKDGR---------YHY 353

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            D  VL R    + L             I               IKDL+A  + I +  D
Sbjct: 354 GDCAVLYRTNAQSRLFEEKF----IVSNIPYKIVGGVNFYARKEIKDLLAYLKTIDNARD 409

Query: 434 DLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQHVIKY 487
           DL+   ++  P        + ++         + Y  ++   +        +K +  + +
Sbjct: 410 DLAVRRIINVPKRGIGATTLNRVADYAAAADISFYNALKMADDIPTLGKSAAKIKPFVNF 469

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-NS 543
           I  +    +  S  +    I+      ++  +    E    I+ +DE ++  +  E+   
Sbjct: 470 IQVMRSKVEIISVSELLQEIIDETGYVKELEAEDTEEAKARIENIDELISKVVAYEEGEE 529

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           + +L   + E+         +     + V +MT+H+AKGLE P V+L      +F     
Sbjct: 530 HPTLSGFLEEVALVADID--SLDEGSDYVVLMTLHSAKGLEFPKVYLAGMEDGLFPS--- 584

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                          +         EE  RL YVG+TRA ++L 
Sbjct: 585 ----------------------------YMSITSDSSSEDLEEERRLAYVGITRAKEELT 616

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           I          ++        V +        +  K  ++          + +     T 
Sbjct: 617 ITCARQRMIRGETQYNKVSRFVREIPSELLDSELRKPASARESSFGKESSFPSFLQNQTT 676

Query: 724 LEREETIKQLMD 735
              + T  +   
Sbjct: 677 ARPKRTTLRQQP 688


>gi|227500430|ref|ZP_03930492.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC
            35098]
 gi|227217493|gb|EEI82812.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC
            35098]
          Length = 1121

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 154/910 (16%), Positives = 315/910 (34%), Gaps = 115/910 (12%)

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
            T+K + +     +    +  +  + +         +          +      +L K   
Sbjct: 277  TKKDSEEDYQFIKSTRDRYKEEIKTISAFIKNTDSLTISLFEGLEKEILAELNSLVKDFM 336

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
              Y + K +   LDF D+     DL+   +     R K+     +I  DE QD++ IQ  
Sbjct: 337  GAYAKKKSEKSYLDFSDMEHKFIDLIDIEEA----RDKLRDRFAYIFFDEYQDSNEIQNY 392

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            +I  L                LF VGD KQSIY F  AEPK  L +    ++      + 
Sbjct: 393  IIERLRG-----------ANNLFLVGDVKQSIYGFRRAEPKIFLEKLDSYEQD-----ED 436

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
               I L  +FRS  DIL   + +F                                    
Sbjct: 437  SIRINLNQNFRSQKDILDFDNFIFDRLM-------------------------------- 464

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
             ++  S  + +       FD   +        + I   I        +    ++     +
Sbjct: 465  -TKESSDIDYKNAGHRLNFDKNDKSPFKRAQVKVIDQKIREEDYLVELVEEIREMGYDYR 523

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            DI +L+R    + +     +      +I    +   +    + +   + + +++ + +DD
Sbjct: 524  DIAILLRSGAKSYIYEEAFK----KAEIPFFNDISKVSFRAVEVTFFINILKYLANPKDD 579

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI-QKFANCGISKFQHVIKYIHELIH 493
            LS + +L+S +F F+EDD+ +I            +      +    K +  +    +  H
Sbjct: 580  LSLLSILRSEIFGFTEDDLVEIKLNSSAFSFYKAFKEYDKDDEIGEKIKDFLTKFADFSH 639

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            +    S ++F   I       Q  ++R   E  I  ++ F++     ++++ + L   + 
Sbjct: 640  MLSLLSLYEFGNYIFEETGLYQFLMARDRAEDRIGNVESFIDIMDEFDKSNDNGLFAFLD 699

Query: 553  ELEQYPPTIK------RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
             ++             R  S + N +RIMT+H +KGLE PVV L D+  +  +    + +
Sbjct: 700  FVDSLSMNQTDSIASARDLSESENLLRIMTIHKSKGLEFPVVILADSSKRFNNKHLKEAI 759

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                 L     +  +  + +  +   + +   + +  ++E  R+LYV MTRA + L +  
Sbjct: 760  VFDDDLGIGINLSDYENKLRFSSIRKNLINDKITEENKKEEMRILYVAMTRAEEMLFVTG 819

Query: 667  HSNTSNEKK-------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
              N    +K           ++ D +      D     +  +   +K   IA        
Sbjct: 820  ERNLKTIEKIAGRVDFLKMNSYMDWLLAILSTDAVGSGLFESFETDKLTGIASLDVIDEC 879

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI-------------------LNPS 760
            ++    +   I   +D++ I ++++  I+   ++PY                     +PS
Sbjct: 880  KSIDKYQTCDINDFLDDENINEEIYKRIQEIHDKPYPYLAEIKDSIKKSVTEVSKDFDPS 939

Query: 761  TID-------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                               K N  +     +   RG IIHKL Q +      K ++    
Sbjct: 940  ADGYKLPNYGEELNQSDFRKPNFITEEKTFKATERGTIIHKLFQALDFKDYEK-ESLEQE 998

Query: 808  YCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
                  K    K    L+    I    +N ++          ++         K D  ++
Sbjct: 999  IAELITKKKIDKATTKLIEIDKILAFYQNHLIKNL--AQKAKKIRKEESFLMQKDDYYLN 1056

Query: 866  GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            G+ID +   +  I + ++KT     +        +  Q+ IY++ ++++   K    L+ 
Sbjct: 1057 GQIDLMFELEDEIILVDFKTDKKKREGF------YDKQIKIYKEAVEEAQAKKVSQALIY 1110

Query: 926  YVSEPKVFII 935
            + +  ++  I
Sbjct: 1111 WYNFKEISEI 1120


>gi|314936042|ref|ZP_07843391.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655859|gb|EFS19602.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 730

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 121/718 (16%), Positives = 229/718 (31%), Gaps = 128/718 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVEHLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFVGAISNL 147

Query: 111 RDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    M ++      +   + + Y+    +N  LDF+DLI+ T  L ++   +  
Sbjct: 148 KNELKTPEDAMKEANDFHSQMVATVYSGYQRQLSRNEALDFDDLIMKTIRLFERVPDA-- 205

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST  ILT  ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKTILTAANEVIKHNTERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +    ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANNGGEKIKYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I     +               D+ +L R    + ++            I      
Sbjct: 332 VVREIIKHRKSGK----------DYNDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R + +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIVANSNDDISLQRIINVPKRGIGPSSVDKIQRYALDNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK          + +  LI   +F    +    IL     RQ       
Sbjct: 438 DALGEVDFIGLSKKVTQECIQFYEMVQNLIKEQEFLEISEIVEEILEKSGYRQMLEREQT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+++    Q LI+ L           +   + V +MT+H+
Sbjct: 498 IESRSRLENIDEFMSVPKDYEKDTPLEEQSLINFLTDLSLVADIDEAQIDSGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VFL+     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFLMGMEESLFPHIR--------------------------------AIKSD 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                EE  R+ YV +TRA + L I   ++     +S        + +          
Sbjct: 586 DDHEMEEERRICYVAITRAEEVLYITHATSRMLFGRSQANLPSRFLKEIPEELLETPA 643


>gi|297590041|ref|ZP_06948681.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus MN8]
 gi|297577169|gb|EFH95883.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus MN8]
          Length = 739

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ Q L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +         +   + + Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++   +         + I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +  N ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + +D+ +L R    + ++            +      
Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + K+         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F   H+    +L     R+       
Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                +E  R+ YV +TRA + L I   ++     +         + +   
Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636


>gi|323439849|gb|EGA97565.1| ATP-dependent DNA helicase [Staphylococcus aureus O11]
 gi|323443012|gb|EGB00633.1| ATP-dependent DNA helicase [Staphylococcus aureus O46]
          Length = 730

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ Q L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +         +   + + Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++   +         + I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +  N ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + +D+ +L R    + ++            +      
Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + K+         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F   H+    +L     R+       
Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                +E  R+ YV +TRA + L I   ++     +         + +   
Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636


>gi|146296855|ref|YP_001180626.1| UvrD/REP helicase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410431|gb|ABP67435.1| ATP-dependent DNA helicase PcrA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 714

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 108/549 (19%), Positives = 192/549 (34%), Gaps = 112/549 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +  K+    DF+DL+  T  L K       I  K   +  +IL+DE QDT+  
Sbjct: 169 EVYRLYNKLLKEYNAFDFDDLLYYTIMLFKTNPD---ILEKYQHKFKYILVDEYQDTNHA 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ +I  L++            R +  VGD+ QSIYSF GA+ + +L  + +        
Sbjct: 226 QFYLIYLLSQ----------KHRNICVVGDDDQSIYSFRGADVRNILEFENVFP------ 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RST  IL+  ++V     N +                        LW
Sbjct: 270 --DAKVIKLEKNYRSTKTILSAANEVIKNNRNRKPKR---------------------LW 306

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++      FD + +       A  ++ +I N+I             I
Sbjct: 307 -------TDNNEGEKIYLYPAFDEVDE-------ANFVSMSIKNLIQGG----------I 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  +I +L R    +           + + I           +   IKD++A  R I + 
Sbjct: 343 KPSEIGILYRTNAQSLNFENAL----SSHSIPYKVVGSLRFYERKEIKDIIAYLRLITNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY------IQKFANCGISKFQHVI 485
           +D+LS   ++  P        + KI     E               +F     +K    I
Sbjct: 399 DDNLSLFRVINVPKRGIGPSTVEKIKVLSDEYGISAYRLLKERGDFEFDRRTYAKLYDFI 458

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             +  +   A+  S  +   L+L   K  +  +S    E       +++ ++     E+ 
Sbjct: 459 LLLESMRTEAESKSVVEVIELVLDKTKYMESLLSSKNEEDFQRAKNIEQLISAAAMFEEE 518

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           +    + L + L     + +       ++V +MTVH AKGLE  VVFL      +F    
Sbjct: 519 NED--KSLQNFLNSITLSFEEDDGQKEDKVMLMTVHAAKGLEFEVVFLTGLEEGLFP--- 573

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                       ++    +   ++  EE  RL YV +TRA   L
Sbjct: 574 ----------------------------LLRSEGEIELQNELEEERRLCYVAITRAKRFL 605

Query: 663 IICKHSNTS 671
           ++   +N  
Sbjct: 606 VLTYANNRR 614


>gi|21283575|ref|NP_646663.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486724|ref|YP_043945.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650656|ref|YP_186790.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160459|ref|YP_494538.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195804|ref|YP_500614.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222055|ref|YP_001332877.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161510128|ref|YP_001575787.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253729683|ref|ZP_04863848.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|258451029|ref|ZP_05699065.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948]
 gi|282923244|ref|ZP_06330925.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765]
 gi|284024952|ref|ZP_06379350.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus 132]
 gi|294849454|ref|ZP_06790196.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754]
 gi|297208935|ref|ZP_06925339.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300913008|ref|ZP_07130446.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304379093|ref|ZP_07361840.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|38604904|sp|Q8NVT1|PCRA_STAAW RecName: Full=ATP-dependent DNA helicase pcrA
 gi|68605626|sp|Q6G828|PCRA_STAAS RecName: Full=ATP-dependent DNA helicase pcrA
 gi|81694154|sp|Q5HEL7|PCRA_STAAC RecName: Full=ATP-dependent DNA helicase pcrA
 gi|110282982|sp|Q53727|PCRA_STAA8 RecName: Full=ATP-dependent DNA helicase pcrA
 gi|21205016|dbj|BAB95711.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245167|emb|CAG43633.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284842|gb|AAW36936.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126433|gb|ABD20947.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203362|gb|ABD31172.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374855|dbj|BAF68115.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160368937|gb|ABX29908.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253726569|gb|EES95298.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257861271|gb|EEV84083.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948]
 gi|269941377|emb|CBI49774.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282593155|gb|EFB98154.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765]
 gi|294823591|gb|EFG40018.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754]
 gi|296886425|gb|EFH25354.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300885786|gb|EFK80993.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304342328|gb|EFM08220.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315196225|gb|EFU26580.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139714|gb|EFW31583.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320142369|gb|EFW34183.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329314582|gb|AEB88995.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728640|gb|EGG65070.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329731448|gb|EGG67811.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 730

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ Q L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +         +   + + Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++   +         + I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +  N ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + +D+ +L R    + ++            +      
Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + K+         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F   H+    +L     R+       
Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                +E  R+ YV +TRA + L I   ++     +         + +   
Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636


>gi|317127162|ref|YP_004093444.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM
           2522]
 gi|315472110|gb|ADU28713.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM
           2522]
          Length = 760

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 109/598 (18%), Positives = 209/598 (34%), Gaps = 116/598 (19%)

Query: 107 FIKIRDRFNTYKMFKSTLA-SLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
               ++   T K ++ T +    L    +   Y +  KKN  LDF+DLI+ T  L K+  
Sbjct: 147 ISSAKNELKTPKDYEKTASGPYELTVLKVYEAYTKELKKNQALDFDDLIMTTIKLFKQ-- 204

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +   ++++DE QDT+  Q+ +++ + +            + +  VGD  Q
Sbjct: 205 -VPEVLEYYQRRFRYVMVDEYQDTNRAQYVLVKMMAD----------RHQNICVVGDSDQ 253

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY + GA+ + +L  +              ++I L  ++RST  IL   ++V     N 
Sbjct: 254 SIYRWRGADIQNILSFENDYPN--------VNVIMLEQNYRSTKKILQAANEVIENNSNR 305

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +                        LW           + ++  +        +  S   
Sbjct: 306 KPKK---------------------LW-------TQNDDGEKIKFY-------EADSEHD 330

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A+ +   I     +            +A DI +L R    + ++  +         I  
Sbjct: 331 EAQYVVGKIKEATDSGR---------YRASDISILYRTNAQSRVMEEML----VKSNIPY 377

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHET 463
                    D   IKDL+A  R + + +DD+SF  ++  P        + KI        
Sbjct: 378 TIVGGTKFYDRKEIKDLLAYLRLVANPDDDISFRRIINVPRRGIGATTLAKIDDYAARND 437

Query: 464 ETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            ++++ +Q+      +          I+ I+  + +  +    +    +L     R+   
Sbjct: 438 LSIFQALQEVRHIGLSPRFEKTLTEFIEQINGWVQMQDYLPVTELVDELLDKTGYREMLK 497

Query: 519 SRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSAN-HNEVR 573
           +    E     + ++EFL  T   E+ +   +L   +++L       K     N  ++V 
Sbjct: 498 NEKNLEAEARLENINEFLTVTQEFEKTSEDKTLVAFLTDLALIADIDKVDDDGNQEDQVL 557

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE P+VFL+     VF H                                 
Sbjct: 558 LMTLHSAKGLEFPLVFLIGLEEGVFPHSRSLMEEAEMEEE-------------------- 597

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                          RL YVG+TRA  +L I +    +   ++N       + +   +
Sbjct: 598 --------------RRLAYVGITRAEQELCISRARMRTLYGRTNMNPPSRFLNEIPDD 641


>gi|73662195|ref|YP_300976.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494710|dbj|BAE18031.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 738

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 118/761 (15%), Positives = 238/761 (31%), Gaps = 128/761 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             +  + +TL            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAKEMKARVETLVGEQAQVLWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +  +         +   +   Y+    +N  LDF+DLI+ T  L ++      
Sbjct: 148 KNELKTPEDAQKEANDYHEQMVATVYKGYQRQLSRNEALDFDDLIMVTIRLFER---VPD 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 VLDYYQNKFQYIHVDEYQDTNKAQYTLVKLLAAKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST +IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW           +  +  +        +       A  
Sbjct: 307 ---------------------LW-------TGNTSGDKIHYYEATTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + +D+ +L R    + ++            +      
Sbjct: 332 VVREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNLPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLRRVINIPKRGIGPSSVDKIQAYAAQNDLSMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK            +  LI   +F    +    +L     R        
Sbjct: 438 DALAEVDFIGLSKKVTQECISFYDVMQNLIKQQEFLEITEIVEEVLTKTGYRDMLEREQT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+N+    Q LI+ L           +   + + +MT+H+
Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDDAQIEDGITLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +   +E  R+ YV +TRA + L +   ++     +         + +   +    +   
Sbjct: 586 DEHEMQEERRICYVAITRAEETLYLTHATSRMLFGRPQSNMPSRFLREIPEDLLENESKG 645

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
            + S  +     ++ +T  P      +  T  +        
Sbjct: 646 KSKSQAQATSNRFQNATKQPAKRAHSQRATATKQKQSATNW 686


>gi|260881142|ref|ZP_05893318.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544]
 gi|260849631|gb|EEX69638.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544]
          Length = 773

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 116/698 (16%), Positives = 224/698 (32%), Gaps = 139/698 (19%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
            +  L    V+  +             + ++   +   +        F    + FL ++ 
Sbjct: 43  RIANLLAQGVAPYSILAITFTNKAATEMRERVDRMIGDAAKDVWLSTFHSFCARFLRREI 102

Query: 79  TP----QKNIITQEINKKSPDLKEKLKKS------------QDEFIKIRDRFNTYKMFKS 122
                 ++N +  + +     +KE LK+             Q+     +++    K  + 
Sbjct: 103 EATGIYKRNFVIYDASDSQTVIKECLKEMNLDDKQFTPASVQNAISNAKNQLMGPKAMER 162

Query: 123 TLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              +        +   Y    + N  LDF+DL++ +  LL++ +    IR K      +I
Sbjct: 163 DADNFHQKKIAEVYRLYANKLRNNNALDFDDLLMISVVLLEENED---IRTKYQGRFRYI 219

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+  Q+++ + L                L  VGD  QSIY + GA+ + ++  
Sbjct: 220 LVDEYQDTNGAQYQLTKILAA----------RHHNLCVVGDADQSIYGWRGADIRNIMDF 269

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           ++   +         ++I+L  ++RST +IL   + V     N +               
Sbjct: 270 EQDYPE--------ATVIKLEQNYRSTKNILAAANAVIEHNVNRKPK------------- 308

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                   +LW             ++ +     D   +       A+ I  TI       
Sbjct: 309 --------ELW-------TENATGEKLTSYQAMDERDE-------AQFITTTI------- 339

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                         DI +L R    + +I            I           D   IKD
Sbjct: 340 --MKQRTIFNASYGDIAILYRTNAQSRIIEETF----MRSGIPYTMVGGLKFYDRKEIKD 393

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE----------TVYEYI 470
           ++A  R I +  D +S + ++  P        + K+     E E           V + I
Sbjct: 394 ILAYLRVIYNPLDTVSLMRIINVPKRGLGATTMAKLTAFAEEQELSLFDVISNPEVLDAI 453

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VID 527
                      +    +I   ++        D    +L       +  +    E    I+
Sbjct: 454 PGITARVKKPLELFTTFIFNFMNTHMNMKLDDLIDRVLKESGYIDELKADKKPEHESRIE 513

Query: 528 VLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L EF+      E++    +L+  +S+L               + V +MT+H+AKGLE P
Sbjct: 514 NLKEFIGVARDFEKSEENPNLETFLSQLSLVSDIDNADIE--DDRVTLMTLHSAKGLEFP 571

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           +VF++     +F H                                      +     EE
Sbjct: 572 IVFMIGMEEGLFPHSRTL----------------------------------MNPDEIEE 597

Query: 647 YNRLLYVGMTRASDQLIICKHSNTS--NEKKSNQRTWY 682
             R  YVG+TRA  +L +      +   + ++   + +
Sbjct: 598 ERRTCYVGITRAQRKLYLTNARQRTIYGKTQAFPPSRF 635


>gi|51473902|ref|YP_067659.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington]
 gi|51460214|gb|AAU04177.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington]
          Length = 823

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 174/603 (28%), Positives = 276/603 (45%), Gaps = 36/603 (5%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              F T+    +K ++++E+ KK P L  +L+K   +   + +     ++   T     L
Sbjct: 237 KKLFFTKDGEKRKRLLSKELTKKYPQLLIELEKITFKIHHLDELRRIEELEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL  +    W+ +K++ EINHILIDE QDTS
Sbjct: 297 AYIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKTTHEWLFHKLENEINHILIDEAQDTS 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW +I +L   F           ++F VGDEKQSI+ F GA            +   T
Sbjct: 357 TTQWNIITTLITKFNA---AEKPNNSIFIVGDEKQSIFRFQGANLHNFNLINEQLKINLT 413

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           +  +KF  I L  S+RS  +IL     V +  +        +   +   SS     G+V 
Sbjct: 414 STNKKFKNITLEYSYRSCPEILQFTHNVLNNIKYNYPNLFLADNPL--ISSLRIHQGSVT 471

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W  V +    +       W    D    +S+A +L  +I   I   I +  I  +   +
Sbjct: 472 VWPLVTNNKQKEF-----FWILPEDDKNAKSAADLLIEKIVNFIKEKIESKKILPSTASQ 526

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KD ++LVRKR      +       N  K+ V  +DR  L ++L I DL+A  +F+L
Sbjct: 527 -ISEKDFMILVRKRD---KFSQNLIKELNKAKLKVEISDRINLKENLPILDLIAAAKFVL 582

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +DDL+  C+LKSP+   SE  ++ +        T++E +             +   + 
Sbjct: 583 LPDDDLNLACLLKSPIIGISEQKLYTLLV-NKNDHTLWEVLSTHT--------DIYNKLD 633

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            +I I +  S  DFF L++     R  +    GN   D+++E L  +        +SLQ 
Sbjct: 634 SIIKIYKIASAEDFFDLVVNRLNLRAIY----GNNNDDMINELLTLSKDYANAIDNSLQG 689

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            I+  E     IKR    + +++R+MTVH +KGLE+P V L D+ +    +         
Sbjct: 690 FIAWFENNEIYIKRDM-EHSDKIRVMTVHGSKGLEAPFVILCDSTTLPIRNNKF------ 742

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             + DD G   +   ++     + +L +  K    +EY RLLYV MTRA DQLIIC  SN
Sbjct: 743 --IWDDNGQMFFSLNAEDTPAFLQELKESEKLKDLQEYMRLLYVAMTRAQDQLIICGFSN 800

Query: 670 TSN 672
             N
Sbjct: 801 KDN 803


>gi|116749176|ref|YP_845863.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB]
 gi|116698240|gb|ABK17428.1| DNA helicase/exodeoxyribonuclease V, subunit A [Syntrophobacter
            fumaroxidans MPOB]
          Length = 1162

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 141/983 (14%), Positives = 288/983 (29%), Gaps = 105/983 (10%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSM-------------ETGNPTILKKAQT 52
             L    + +   + +  L   ++  +    + S                G     +  + 
Sbjct: 216  ALDRTRTEDYAARAVRELVEVELRALRGAFAGSPLGKAWGSFIEDLENRGASAGTELPRP 275

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE----------INKKSPDLKEKLKK 102
            +  A+  +  +  +  ++   LT+   P+K+                     +L+     
Sbjct: 276  VPGATWEELPQ--WRRIADALLTKAGAPRKSFGPASGFYSGFGKTPWCNLVRELEGDTAD 333

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                  ++  +  +    ++    + L   +   Y+E  +   +LDF  L +    L   
Sbjct: 334  RLHRIRELPVKEASRPDAETLFDLILLLHAIIEAYDERCRSRRLLDFSALEMAALRLF-D 392

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +   + ++  +D  + H+L+DE QDTS  QW ++R L E +  G       +TLF VGD 
Sbjct: 393  QVRPSDLQLLLDHRVRHVLVDEFQDTSRQQWRLLRHLFEGWEAGD-----AKTLFVVGDP 447

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQSIY+F  AE       K        +       + L  +FRS   ++   + +F    
Sbjct: 448  KQSIYAFRKAEVMLFTEAKNGLPID-EHRRLPLESLVLSTNFRSQPHLIQWANGLFGQTV 506

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                  E          +                    +             +  +   A
Sbjct: 507  MRDPRPEIDEVPFIPSVAS----------PATRPVECPEPPELALFNGWPAPAAARRREA 556

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              LAR +                 + R      I VL+  R          +  K    +
Sbjct: 557  EWLARNV---------------WEETRESPDTRIGVLLFARTHLATYLEAFQRWK----V 597

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
             V   +   L +   +K L  L R ++   DDL++   L SP      DD++ +  +  +
Sbjct: 598  PVQVAEGLKLLERPEVKYLRQLCRALVLPHDDLAWASQLHSPWLVLGFDDLYAVSLETGD 657

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            +   +    +       +       +             D   +      G +    R+G
Sbjct: 658  S---WVEKIRSFAQKDERVAGFWNGLEAARRHLGHEPLADVMEIAWLDLGGARIVSQRWG 714

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
               +     F       E +        + EL               + V +MTVH AKG
Sbjct: 715  GRGLACCRRFFQLIREAETHEPVETLRRLEEL-LENAYEPVDPETARSGVSVMTVHRAKG 773

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ-----SKSRNNIVSDLIK 637
            LE   V+L          +   +   +       G    +           + + S L +
Sbjct: 774  LEFDSVYLPFLDWNPVVRQRSSQQPYLLERVPGSGELFLLAAHPDRLKGEPDPLFSWLAR 833

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK- 696
                    E  RL YV +TR+  +L +          +         +     + +  + 
Sbjct: 834  LQADRAWGEAKRLFYVAVTRSRTRLHLSGVVPLRKSSEELIFPPKCPLAWLNEHFDFSES 893

Query: 697  --------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                W     +        +E   +       +        P  
Sbjct: 894  PGAQGFSLPEGSEGGEVPAAWRREWSAGGDALRVLVEPAPSKPPAGAAETYEPVEIHPAA 953

Query: 749  NDINEP--YILNPSTIDTK---------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
             +   P   I +PS++             + +      +     RG ++H+LL       
Sbjct: 954  FERERPLFRITSPSSLALPYDEEEGEEDFEPSAPWESPETLPRLRGTLVHRLLADFACGR 1013

Query: 798  EHKRKNFITSYCTKNAKLWP--AKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVS 852
            +      I S   +         +  +++L  + R LE+P ++   +      + E S+ 
Sbjct: 1014 KLPSIEAIRSRLGREGMDAEGAGETARSVLAEVERCLEDPWLSPCFALPPDLLFVEYSLE 1073

Query: 853  GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI-----PYTHIAQLSIY 907
               +      ++SG+ID  +       + +YKT      E            +  QL+ Y
Sbjct: 1074 ---SLHDPRELLSGKIDLAAYLDGRWRLIDYKTSRGKAGESAETLCRRELERYAPQLAAY 1130

Query: 908  EKILKDSYPNK--SLVCLLIYVS 928
             ++       +   +   +   +
Sbjct: 1131 RQMWARLRGVEEGEVEIYVYLTA 1153


>gi|221140358|ref|ZP_03564851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|302751778|gb|ADL65955.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp.
           aureus str. JKD6008]
          Length = 730

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ Q L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVVKDVLKNENIDSKKFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +         +   + + Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++   +         + I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +  N ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + +D+ +L R    + ++            +      
Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + K+         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F   H+    +L     R+       
Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                +E  R+ YV +TRA + L I   ++     +         + +   
Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636


>gi|291518464|emb|CBK73685.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens
           16/4]
          Length = 801

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 117/575 (20%), Positives = 196/575 (34%), Gaps = 115/575 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y+   ++N   DF+DLI+ T +LL+   +   +R   + +  +I++DE QDT+ 
Sbjct: 170 ATVYREYQARLRQNNAFDFDDLIMKTVELLR---LDGDVRAYYNDKFKYIMVDEYQDTNA 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E++R LT             + L  VGD+ QSIY F GA+   +L  ++        
Sbjct: 227 AQFELVRLLTG----------GAQNLCVVGDDDQSIYKFRGADIYNILNFEQHFPA---- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST +IL   + V +  E  +  +                     L
Sbjct: 273 ----AHVIKLEQNYRSTGNILEAANAVIANNEGRKEKA---------------------L 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W +       Q                Q  SA   A  IA  I  ++             
Sbjct: 308 WTEAEDGDKIQFQ--------------QFDSAYEEASFIASNIGALVRKGE--------- 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  VL R    + LI            I               IKD++A  + + +
Sbjct: 345 ADYKDCAVLYRTNAQSRLIEEKM----IYEGIPYKIVGGVNFYSRKEIKDVLAYLKTVDN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQHV 484
             DD++   ++  P        I K+    R      YE +    +        +K Q  
Sbjct: 401 GSDDIAVQRIINIPKRGIGATTITKVSDFARENGLNFYEALLHCEDVPSIGKAATKIQGF 460

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
              I +L  IA+  S       IL       +  +   +E    I+ +DE L   +  E+
Sbjct: 461 TSLIEKLRKIAKEESVSALVEEILEQTDYVAELRAEGTDEAKARIENIDELLTKAVAYEK 520

Query: 542 N-----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +        +L   + ++             + N V +MT+H AKGLE P V++      
Sbjct: 521 DARDDGEEPTLSGFLEDVALVADIDSY--EESDNYVVLMTLHGAKGLEFPRVYMAGMEDG 578

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F  +          + D  G                        S  EE  RL YVG+T
Sbjct: 579 LFPGQAA--------IFDGGGA----------------------DSELEEERRLAYVGIT 608

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           RA + L +          ++        V +    
Sbjct: 609 RAREHLTMTAARMRMVRGETAFHKISRFVKEIPEE 643


>gi|309389840|gb|ADO77720.1| ATP-dependent DNA helicase PcrA [Halanaerobium praevalens DSM 2228]
          Length = 715

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 112/613 (18%), Positives = 204/613 (33%), Gaps = 127/613 (20%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           F  L    L ++    KN+  ++            +   ++    ++   T +      A
Sbjct: 114 FDSLDQRKLVKEILKSKNLDPKKTKA---------RSVLNKISNAKNELKTPQQMTKLAA 164

Query: 126 SL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
           S     A  + A Y++  K+N  +DF+DLI  T  L ++  +   +     +   +IL+D
Sbjct: 165 SFFEKTAAEIYAEYQKRLKENNAMDFDDLIQQTVRLFEEFPL---VLEHYQERFKYILVD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QD +  Q++++  L + +          R L  VGD  Q IY F GA+ + +L  +  
Sbjct: 222 EYQDVNHAQYQLVNLLAKLY----------RNLCVVGDPDQGIYGFRGADIRNILNFEDD 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         I L  ++RS A+IL     V     + +                  
Sbjct: 272 YP--------DAKTIRLEQNYRSKANILKAAQAVIKNNSSRKEK---------------- 307

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                +LW         Q    +       D   +       A  +  T   +  ++   
Sbjct: 308 -----ELW-------TDQGEGAKIELYEAKDEKEE-------ADFVCRTAKKLTKSE--- 345

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                  +   D+ +L R    +     +       YKI           + + IKD+MA
Sbjct: 346 ------PLTYDDLAILYRTNSQSRAFEDML----MKYKIPYQIVGGVRFYERMEIKDIMA 395

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANC 476
             R I +  DD+SF+ ++  P        + K+          +YE           +  
Sbjct: 396 YLRLIYNPADDISFLRVINRPKRGIGAGTLAKVQKFAEANNLDLYEAALKSKENPNLSGT 455

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFL 533
              +  H  + I +L       +       +L     R    +    +     + ++E  
Sbjct: 456 YAKRVLHFTQIIEDLRAEQDQIALARLTEKLLDKSGYRHNLEAEKTAKAESRLENIEELF 515

Query: 534 NFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           +      + +  +SL   + E+           + +   + +MT+H+AKGLE PVVFLV 
Sbjct: 516 SVINEYMKNSENNSLAGFLEEVTLMSDIDSMDKNQS--VLTLMTIHSAKGLEFPVVFLVG 573

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F H +                                     ++   EE  RL Y
Sbjct: 574 MEEGIFPHSNS----------------------------------MFEQQGMEEERRLCY 599

Query: 653 VGMTRASDQLIIC 665
           VGMTRA  +L + 
Sbjct: 600 VGMTRAESRLFLS 612


>gi|289550376|ref|YP_003471280.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis
           HKU09-01]
 gi|289179908|gb|ADC87153.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis
           HKU09-01]
          Length = 746

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 121/720 (16%), Positives = 231/720 (32%), Gaps = 128/720 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ + L     +      
Sbjct: 28  GAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNKAAKEMKQRVEQLVGEEASVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFISAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +    +    +   + + Y+    +N  LDF+DLI+ T  L ++   +  
Sbjct: 148 KNELKTPDDAQKEANNYHEQMIATVYSGYQRQLSRNEALDFDDLIMTTIRLFERVPDA-- 205

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKMLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKSIYLEQNYRSTKTILNAANEVIKNNTERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +  N ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTNGEKIKYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   +                     DI +L R    + ++            I      
Sbjct: 332 VVREVMKHQRNGK----------SYGDIAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R + +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIVANSNDDISLQRIINVPKRGIGPSSVEKIQAYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK            +  LI   +F    +    IL     R        
Sbjct: 438 DALSEADFIGLSKKVTQGCIQFYDLLQNLIKEQEFLEISEIVEEILEKTGYRAMLEREQT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ LDEF++     E+N+    Q LI+ L           +   + V +MT+H+
Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEAQIDDGVTMMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VFL+     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFLMGMEESLFPHIR--------------------------------AIKSD 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                +E  R+ YV +TRA +QL I + ++     +S        + +   +   +  + 
Sbjct: 586 DDHDMQEERRICYVAITRAEEQLYITRATSRMLFGRSQSNMPSRFLEEIPEDLLELPNLD 645


>gi|242371786|ref|ZP_04817360.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           M23864:W1]
 gi|242350487|gb|EES42088.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis
           M23864:W1]
          Length = 729

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 123/763 (16%), Positives = 240/763 (31%), Gaps = 128/763 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKQRVEQLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +  +         +   +   Y+    +N  LDF+DLI+ T +L ++   +  
Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFERVPDA-- 205

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST +IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     +  +        +       A  
Sbjct: 307 ---------------------LW-------TANTGGDKIQYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  +  D+ +L R    + ++            I      
Sbjct: 332 VVREIMKHQRNGK----------KYSDMAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQTYAVQNQISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F    D    +L     R        
Sbjct: 438 DALGEVDFIGLSKKVTQECINFYETITNLIKEQEFLEISDIVDEVLQKSGYRDMLEREQT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ LDEF++     E+N+    Q LI+ L           +   + V +MT+H+
Sbjct: 498 LESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTQSGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSD 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  R+ YV +TRA + L I   +      +S        + +   +        
Sbjct: 586 DDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLREIPEDLLESHTGT 645

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
              +I++ +       +    +   +   +  ++ D+      
Sbjct: 646 KRQTISQAKPQQKRGFSKRTTSPKKQVSSSDWKVGDKVTHKAW 688


>gi|91205173|ref|YP_537528.1| ATP-dependent helicase [Rickettsia bellii RML369-C]
 gi|157827491|ref|YP_001496555.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389]
 gi|91068717|gb|ABE04439.1| ATP-dependent helicase [Rickettsia bellii RML369-C]
 gi|157802795|gb|ABV79518.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389]
          Length = 809

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 173/634 (27%), Positives = 292/634 (46%), Gaps = 51/634 (8%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
             ++       +E     L   F T+    +K+++++E+ KK P L  +L+K   +  K+
Sbjct: 221 DKIKNLFADYDLEIEPKEL---FFTKDGKKRKSLLSKELTKKHPKLLLELEKLTSQIYKL 277

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            + +   ++   T     LA  L   YE+ K++N +LD++DLI +   L + + +  W+ 
Sbjct: 278 DEEYRIEELEYHTNLLSKLAYILLEKYEKFKEENNLLDYDDLIYHAEKLFQNKAIHEWLS 337

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
           +K++ EI+HIL+DE QDTS  QW +I +L  +F      +    ++F VGD+KQSIYSF 
Sbjct: 338 HKLESEIDHILVDEAQDTSRDQWNIISTLITEF------NRPDSSIFIVGDDKQSIYSFQ 391

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+           Q     A +KF  I L  S+RS  +IL    +VF   +        
Sbjct: 392 GADLANFNLVNEKLQTNLAKANKKFKKITLEYSYRSCGEILQFTHQVFKYIKAHYPTLFL 451

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           S   +   S+     G+V +W  V S+       ++  W    D     SSA +L  +I 
Sbjct: 452 SDNPV--ISAFRTHTGSVTVWSLVTSEKQ-----EELFWALPQDYANALSSADLLIEKIV 504

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I   I +  I        I  KD ++LVRKR +    +       N  K+ V  +D+ 
Sbjct: 505 SFIKEKISSKEILP-ATGNPISEKDFMILVRKRDE---FSNNLIKELNKTKLKVEASDKV 560

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
            + +HL I DL+++ +F L   DDL+   +LKSP+   SE  ++++ T     ++++E  
Sbjct: 561 NIKEHLPIMDLISVAKFALLPYDDLNLAALLKSPIIGISEQQLYELLT-NKNDKSLWE-- 617

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                  +S    +   +   I + Q  +  +FF L           ++     + D+++
Sbjct: 618 ------NLSSHPDIYNKLTSFIELYQNSTLDNFFDL----------LVNTLNLHIDDMVN 661

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           E L  +     N  +SLQ  +S  E     IKR    + +++R+MTVH +KGLE+P++ L
Sbjct: 662 ELLTLSSNYANNMDNSLQSFVSWFENNDIWIKRDM-EHSDKIRVMTVHGSKGLEAPIIIL 720

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            D+ +   S            +  D G   +   +      + +L +  K    +EY RL
Sbjct: 721 CDSTTLPISSNKF--------IWHDNGDMYFSASAADTPKFLQELKEAEKLKDLQEYIRL 772

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
           LYV MTRA D LIIC     SN+    +  WY++
Sbjct: 773 LYVAMTRAKDHLIICGF---SNKSNIPENCWYEI 803


>gi|160945992|ref|ZP_02093218.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii
            M21/2]
 gi|158443723|gb|EDP20728.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1228

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 153/1038 (14%), Positives = 309/1038 (29%), Gaps = 142/1038 (13%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            LK        +  + +            +     V+   E     + K A    QA Q  
Sbjct: 228  LKAALADCHADFDQELAVAEEKKTPSARAKAQATVAEKYEEAGTRLEKAAALFAQAEQLA 287

Query: 61   C---IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF---------- 107
                 +  + LL+ + L  +  P    + + +        +                   
Sbjct: 288  ATGQWDPLYDLLTPYVLGMEEAPGLKGMKKRLGGDHKAEIKTRSDEAAALFEQMTQLICC 347

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +     +         A     +  +A +   K++  +L+F D       LL+  +   
Sbjct: 348  SEAEAETDRQITLPRLRALFAAVRDFDARFTARKRERKLLEFSDFEHLALRLLRTPEGKP 407

Query: 168  WIR-YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                  I Q+   +++DE QDT+ +Q  + R L            +   LF VGD KQSI
Sbjct: 408  TPLCENIRQDYAAVMVDEYQDTNALQDALYRCLAA---------PAGDNLFLVGDLKQSI 458

Query: 227  YSFHGAEPKRVLREKRINQ---------KRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            Y F  AEP    ++              +         +++ L  +FRS   ++  ++  
Sbjct: 459  YRFRQAEPGIFRQKLDSWPLLPGAKARPRPPEGTPGTDALLALDANFRSAPQVVAGINYF 518

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            F      +          R      G                 +     E      D   
Sbjct: 519  FEQLMTPELGDTAYGDGQRLVCGAPG-----------------EYQGSVEVQFLPDDETE 561

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
             +      A  IA  I+ ++        G   R ++ +D  VL+  R + P         
Sbjct: 562  TD------AGWIAERIAQLVSAGEPVREGSTTRPVRYEDCCVLLAARTEFPAYVEALTA- 614

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 I V  + R  L     I+ L+AL + I     D+     +  P+F F+EDD+ ++
Sbjct: 615  ---RGIPVYADARENLMLAPHIRPLIALLKVIDDPSQDIYLAAAMLGPMFGFTEDDLVRL 671

Query: 457  CTQRHE---------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
              +  +                  +        +    K +    ++  L  +A+     
Sbjct: 672  RARSRQVQAEPDKKPARISLYGALLLALEDPADDPFTEKVKDFYAHLTALRQMARSAPAE 731

Query: 502  DFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP- 559
                 I  +        +   G    +    F +F   +     S+L   I    Q    
Sbjct: 732  QLLEEIFASTGYLAALGVLENGARRREDARRFASFCATSGAGGISALVRAIDAAAQAGST 791

Query: 560  -TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                     +   V IMT+H +KGL+ PVVF+ DT  +  +    + + +  +      +
Sbjct: 792  GQDTVPSGVHPGCVSIMTIHRSKGLQFPVVFVGDTARKFNASDIRQPVLVHRTFGAGLRL 851

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK--- 675
                 +   +    + L     +  + E  RLLYV +TRA D+LI+    ++    K   
Sbjct: 852  RPENGEGAYKTAAYTALANVHARELRSEQMRLLYVALTRAQDKLILTVPMSSGKSAKPFA 911

Query: 676  ---------------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI---------- 710
                               ++ D +  +         ++  +   +  ++          
Sbjct: 912  KAAAFLAAGAGATLHQQANSFADWLRAALLVHPDGGMLRQLSGNRELLFVQTESVMAIRV 971

Query: 711  ---AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG- 766
               A + S     +T  E  ET   L+++ +       P       P  ++ ++I  K  
Sbjct: 972  CDDAVQLSEKPDADTENEVPETDLALVEKLRQGFAWQYPAAALAQVPAKVSVTSIVHKAE 1031

Query: 767  ----KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE-------HKRKNFITSYCTKNAKL 815
                +               G  +H  L+                 +        + A  
Sbjct: 1032 QTTLERPGFLSKDGLTAAEMGTALHAFLEHADFARLAAAKAAGTLDEAIPAERDRQVAVQ 1091

Query: 816  WPAKEYKNLLLSI--TRLLENPMMTTAMSC-DSYSEVSVSGKIN---------------C 857
              A E    L ++   R +E+       +      E+     +                 
Sbjct: 1092 LTAPEIAEKLDAVCIRRFVESEAFAKICAAQQVLRELPFITALPAGAVLAAQGHEELPAA 1151

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
                +++ G  D + +   ++ + +YKT     +        + AQL++Y   ++  +  
Sbjct: 1152 ADAQVLVQGIADLVLVYPDHLELLDYKTDRRKAES--DFLRAYRAQLNLYAIAIEKRFAP 1209

Query: 918  KSLV-CLLIYVSEPKVFI 934
            K +    +   +  K+  
Sbjct: 1210 KKVTYKGIYSFALGKLIE 1227


>gi|219856415|ref|YP_002473537.1| hypothetical protein CKR_3072 [Clostridium kluyveri NBRC 12016]
 gi|219570139|dbj|BAH08123.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 754

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 113/617 (18%), Positives = 210/617 (34%), Gaps = 116/617 (18%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           KE + +   +   +  +    K  +       +A  +   Y++  K+N  LDF+DLI  T
Sbjct: 145 KEIINRISRQKDNLISQDRFKKENEGNFRMNKIA-DVYVMYQKKLKENNALDFDDLIFKT 203

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L K+      +     ++  +I++DE QDT+  Q+E IR L +            + +
Sbjct: 204 VQLFKEHPD---VLEFYQRKFKYIMVDEYQDTNKSQYEFIRLLAQ----------VEKNI 250

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ Q IY++ GA+ + +L  +               +I+L  ++RS A+IL   + 
Sbjct: 251 CVVGDDDQCIYAWRGADVENILNFENDY--------INSKVIKLEQNYRSKANILKAAND 302

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V S   + +                               +  +    + + + +  D  
Sbjct: 303 VISNNFHRKQKVL---------------------------KTANDSGDKIKLYRATTDID 335

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                     R IA  I  ++           +    +D  VL RK   + +   +    
Sbjct: 336 EG--------RYIASRIKEILN--------IDKDKHYRDFAVLYRKNVQSRIFEDVF--- 376

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                I           D   IKD++A  +FI +  D++S   ++  P  N  E  I KI
Sbjct: 377 -MKSNIPYRIIGGLKFYDRKEIKDILAYLKFINNPLDNVSLRRIINVPKRNIGEATIQKI 435

Query: 457 C-TQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                   E++Y  +              +  +  +  I+  I      S  +    IL 
Sbjct: 436 QSFADSMDESIYNALLDIDKSMNLTQRSINSIKKFVSLINSFIKSRDKISVSELIKEILN 495

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAH 565
                ++       +    I+ L E ++  +  E  +  +SL   + ++           
Sbjct: 496 TTGYLEELKHSKEPDSISRIENLKELVSAAVEFEVTSEDTSLSAFLEKVTLVSDIDNFD- 554

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             N + V +MTVH+AKGLE PVVF+V   + +F                           
Sbjct: 555 -NNADSVVLMTVHSAKGLEFPVVFMVGMENGIFPG------------------------- 588

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                    +         EE  RL YVG+TRA + + +          K       D +
Sbjct: 589 ---------IQSLDNPKEMEESRRLCYVGITRAKENVYMTFADTRRVFGKMVSYKQSDFI 639

Query: 686 YDSFHNDERVKKIKLTN 702
            +     +     + ++
Sbjct: 640 DEISDELKEYDNFRKSD 656


>gi|153956081|ref|YP_001396846.1| PcrA [Clostridium kluyveri DSM 555]
 gi|146348939|gb|EDK35475.1| PcrA [Clostridium kluyveri DSM 555]
          Length = 745

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 113/617 (18%), Positives = 210/617 (34%), Gaps = 116/617 (18%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           KE + +   +   +  +    K  +       +A  +   Y++  K+N  LDF+DLI  T
Sbjct: 136 KEIINRISRQKDNLISQDRFKKENEGNFRMNKIA-DVYVMYQKKLKENNALDFDDLIFKT 194

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L K+      +     ++  +I++DE QDT+  Q+E IR L +            + +
Sbjct: 195 VQLFKEHPD---VLEFYQRKFKYIMVDEYQDTNKSQYEFIRLLAQ----------VEKNI 241

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ Q IY++ GA+ + +L  +               +I+L  ++RS A+IL   + 
Sbjct: 242 CVVGDDDQCIYAWRGADVENILNFENDY--------INSKVIKLEQNYRSKANILKAAND 293

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V S   + +                               +  +    + + + +  D  
Sbjct: 294 VISNNFHRKQKVL---------------------------KTANDSGDKIKLYRATTDID 326

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                     R IA  I  ++           +    +D  VL RK   + +   +    
Sbjct: 327 EG--------RYIASRIKEILN--------IDKDKHYRDFAVLYRKNVQSRIFEDVF--- 367

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                I           D   IKD++A  +FI +  D++S   ++  P  N  E  I KI
Sbjct: 368 -MKSNIPYRIIGGLKFYDRKEIKDILAYLKFINNPLDNVSLRRIINVPKRNIGEATIQKI 426

Query: 457 C-TQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                   E++Y  +              +  +  +  I+  I      S  +    IL 
Sbjct: 427 QSFADSMDESIYNALLDIDKSMNLTQRSINSIKKFVSLINSFIKSRDKISVSELIKEILN 486

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAH 565
                ++       +    I+ L E ++  +  E  +  +SL   + ++           
Sbjct: 487 TTGYLEELKHSKEPDSISRIENLKELVSAAVEFEVTSEDTSLSAFLEKVTLVSDIDNFD- 545

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             N + V +MTVH+AKGLE PVVF+V   + +F                           
Sbjct: 546 -NNADSVVLMTVHSAKGLEFPVVFMVGMENGIFPG------------------------- 579

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                    +         EE  RL YVG+TRA + + +          K       D +
Sbjct: 580 ---------IQSLDNPKEMEESRRLCYVGITRAKENVYMTFADTRRVFGKMVSYKQSDFI 630

Query: 686 YDSFHNDERVKKIKLTN 702
            +     +     + ++
Sbjct: 631 DEISDELKEYDNFRKSD 647


>gi|229917962|ref|YP_002886608.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b]
 gi|229469391|gb|ACQ71163.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b]
          Length = 738

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 118/688 (17%), Positives = 225/688 (32%), Gaps = 132/688 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV+  N             +  +   L            
Sbjct: 32  GAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNKAAREMKDRIARLVGGVAEDIWIST 91

Query: 66  FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT------ 116
           F  +    L +        ++    + + +   +K+ LK+   +  K   R         
Sbjct: 92  FHSMCVRILRRDIDRIRYDRSFSILDASDQLTAIKQVLKELNLDPKKYEPRTLLGMISNH 151

Query: 117 ---YKMFKSTLASL------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
               +  K   A +       +   +   YE+  K+N VLDF+DLI+ T  L ++   + 
Sbjct: 152 KNELRTAKDAAALVGNNPYERIISDVYTAYEKKLKQNNVLDFDDLIMKTIHLFQE---AP 208

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     ++  +I +DE QDT+  Q+ +++ L +          +   L  VGD  QSIY
Sbjct: 209 DVLAFYQKKFKYIHVDEYQDTNRAQYTLVKLLAQ----------AHENLCVVGDSDQSIY 258

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+   +L  ++              +I L  ++RST  IL   + V     + +  
Sbjct: 259 RWRGADIANILTFEKDYP--------SAHVILLEQNYRSTKRILEAANGVIQNNASRKEK 310

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW             ++       D   +       A 
Sbjct: 311 N---------------------LW-------TENDEGEKLLLHVASDDRDE-------AF 335

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   +  +          K   +    + VL R    +  +  +         I     
Sbjct: 336 FIMNQMKEL----------KMEGMDYGQMAVLYRTNAQSRGLEEML----LKSNIPYKMV 381

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                 +   IKD++A  R I + ++D+SFV ++  P        I K+      +  ++
Sbjct: 382 GGTKFYERKEIKDVLAYLRLIANPDEDISFVRVVNEPKRGIGAATIDKLGDFADMQGVSL 441

Query: 467 YEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            + I+       A    +K     + + +L  +A + S  +    +L      +      
Sbjct: 442 MDAIRDIELSGIAPRTATKLADFRQMMMDLRQMADYLSISELVEEVLKKTGYEEMLKIEK 501

Query: 522 GNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             E     + L EFL+     E ++   +L   +++L               ++V +MT+
Sbjct: 502 TLEAESRLENLQEFLSVAQNFEKESDEQTLVAFLTDLTLVSDLDSLDEVDESHQVTLMTL 561

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE PVVFL+     +F H                                     
Sbjct: 562 HSAKGLEFPVVFLIGMEEGLFPHSRALNDEEEMEEE------------------------ 597

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                      RL YVG+TRA  +L + 
Sbjct: 598 ----------RRLAYVGITRAEKRLYLT 615


>gi|212638095|ref|YP_002314615.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1]
 gi|212559575|gb|ACJ32630.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1]
          Length = 726

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 121/748 (16%), Positives = 234/748 (31%), Gaps = 145/748 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++ + +            
Sbjct: 37  GAGSGKTRVLTHRIAYLMAEKGVAPWNILAITFTNKAAREMKERVERIVGKQAEDIWIST 96

Query: 66  FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106
           F  +    L                  T + +  K+I+  + I+ K  D +  L      
Sbjct: 97  FHSMCVRILRRDIDRIGIHANFSILDPTDQLSVLKHILKDRNIDPKKYDPRALLGAISSA 156

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +       +   +      L   +   Y++   +N  LDF+DLI+ T  L ++    
Sbjct: 157 KNDLVTPEKYAEQAANPYE--KLVAEVYQEYQKRLLRNHALDFDDLIMTTIQLFQR---V 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ ++  L + F          + L  VGD  QSI
Sbjct: 212 PEVLEYYQRKFQYIHVDEYQDTNRSQYLLVNMLAKRF----------QNLCVVGDSDQSI 261

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++              +I L  ++RST  IL   + V       + 
Sbjct: 262 YRWRGADISNILSFEKDYPN--------AKVILLEQNYRSTKRILQAANAVIEHNTQRKP 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               +  +  H       +  V                                     A
Sbjct: 314 KKLWTENSEGHALVYYEAMTEVD-----------------------------------EA 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +   I   +                KD  VL R    + ++  +         I    
Sbjct: 339 QFVVGKIKEYVDAGKR---------TYKDFAVLYRTNAQSRVLEEML----LKANIPYKI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I +  DD+SF  ++  P        I KI      +  +
Sbjct: 386 VGGLKFYDRKEIKDILAYLRLIANPNDDISFTRIINVPKRGIGASTIDKIAAYASSQGIS 445

Query: 466 VYEY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +++          +    +      + IH    +  + S  +    +L     R      
Sbjct: 446 MFDALGSIEEMGISARIAAPLVQFREQIHHWSQMQHYLSVTELVEDVLDRSGYRDMLREE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANH---NEVR 573
              E     + +DEFL+ T   EQ N   SL   +++L       +  + +     + V 
Sbjct: 506 KTLEAHSRLENIDEFLSVTQHFEQVNEDKSLVAFLTDLALVADIDQLDNDSEGQTNDAVV 565

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE PVVFLV     +F H                                 
Sbjct: 566 LMTLHSAKGLEFPVVFLVGLEEGIFPHNRSLNDEDEMEEERR------------------ 607

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC--------KHSNTSNEKKSNQRTWYDMV 685
                           L YVG+TRA ++L +           ++ +   +       +++
Sbjct: 608 ----------------LAYVGITRAEEKLFLTRAHMRTLFGQTHVNAPSRFIDEIPEELI 651

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYE 713
             +    ++       ++ ++ EW   +
Sbjct: 652 EYAHKRVKKSSASVRPSTASQGEWRVGD 679


>gi|194015861|ref|ZP_03054476.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061]
 gi|194012216|gb|EDW21783.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061]
          Length = 740

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 122/749 (16%), Positives = 234/749 (31%), Gaps = 132/749 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++ Q +            
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQAILGPGADDIWIST 91

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110
           F  +    L +            I   S  L       ++                    
Sbjct: 92  FHSMCVRILRRDIDRIGVNRNFSILDTSDQLSVIKNILKERNIDPKKFDPRSILGSISSA 151

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++     + +  T +     +   +   Y++   KN  LDF+DLI+ T  L ++      
Sbjct: 152 KNELIDAEEYAKTASDFYDQVVSDVYTDYQKRLLKNQSLDFDDLIMMTIRLFER---IPE 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ +++ L + F          + +  VGD  QSIY 
Sbjct: 209 VLEHYQRKFQYIHVDEYQDTNRAQYMLVKLLAQRF----------QNICVVGDSDQSIYR 258

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++              +I L  ++RST  IL   + V     N +  +
Sbjct: 259 WRGADITNILSFEKDYPSS--------EVILLEQNYRSTKRILNAANTVIQNNSNRKPKN 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        + 
Sbjct: 311 ---------------------LW-------TENDEGAKIAYYRADNEFGEG-------QF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I  +  +            +  D  +L R    + +I            I      
Sbjct: 336 VAGKIHQLHQSGKR---------KLSDFAILYRTNAQSRVIEETL----LKSNIQYNIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKD++A  R + + +DD+SF  ++  P        + KI         +++
Sbjct: 383 GTKFYDRKEIKDILAYLRLVANPDDDISFARIVNVPKRGIGATSVDKIAAYAEMNDLSMF 442

Query: 468 EY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E          +    +      + I +L ++  + S  +    IL     R+       
Sbjct: 443 EALGQVDFIGLSARAANALDEFKQLIDQLTNMQDYLSVTELTEEILEKTGYREALKVEKT 502

Query: 523 NEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMT 576
            E     + +DEFL+ T    EQN   SL   +++L       K       + + V +MT
Sbjct: 503 IEAQSRLENIDEFLSVTKNFEEQNEDKSLVTFLTDLALVADIDKLDENEEEDQDAVILMT 562

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE PVVFL+     VF H                                    
Sbjct: 563 LHAAKGLEFPVVFLMGMEEGVFPHSRSL-------------------------------- 590

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             ++ +  EE  RL YVG+TRA ++L +      +   ++N       + +   +     
Sbjct: 591 --MEDAEMEEERRLAYVGITRAEEELYLSSAKMRTLFGRTNMNLESRFIREIPADLLDNL 648

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725
             K        +                +
Sbjct: 649 NEKKETKTPFGQTRERPQRRGPVSRPQTQ 677


>gi|302874255|ref|YP_003842888.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|307689481|ref|ZP_07631927.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|302577112|gb|ADL51124.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
          Length = 753

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 104/576 (18%), Positives = 194/576 (33%), Gaps = 116/576 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++  K+N  LDF+DLI  T +L +K    + +     ++  +I+IDE QDT+ 
Sbjct: 170 ADVYLLYQKKLKQNNALDFDDLIFKTVELFEKS---SEVLEFYQRKFKYIMIDEYQDTNY 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q++  + L              + +  VGD+ QSIY + GA+ + +L  ++   K    
Sbjct: 227 SQYKFAKLLAA----------KEKNICVVGDDDQSIYGWRGADIRNILNFEKDYDK---- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +II+L  ++RS A+IL   + V     +                           
Sbjct: 273 ----ATIIKLEENYRSKANILEAANSVIKNNPHKHEKVL--------------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 +  ++   +   +    D            R +A  I  +          +   
Sbjct: 308 ------RTTNESGDKIRIYRGSNDIDEG--------RFVAVEIERL---------KEIDS 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KD  +L R    + +   +         I           D   IKD+MA  + I +
Sbjct: 345 RRYKDYSILYRTNAQSRIFEDIF----VKANIPYRIIGGLKFYDRKEIKDIMAYLKLINN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483
             DD+S   ++  P  +  +  + K+       E          + +       ++    
Sbjct: 401 PSDDVSLQRIINVPKRSIGDTTVNKLVDFAAFEEEPIYSILLDVDLVPGLTPRAVTSLNK 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               I+  I      S  D    IL       +       E    I+ L + ++  +  E
Sbjct: 461 FTSLINSFIRRKDSISVSDLIKEILNESGYLAELKDSKDVEDISRIENLKQLVSAAVEFE 520

Query: 541 QNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +     SL   + +              + + V +MTVH+AKGLE PVVF+V   + +F 
Sbjct: 521 RTEEDTSLAAFLEKTTLVADVDNYD--EDADTVTMMTVHSAKGLEFPVVFMVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                   + S  EE  RL YVG+TRA 
Sbjct: 579 GSASFN----------------------------------EDSEMEESRRLCYVGITRAK 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++L +    + +   ++      D + +   + +  
Sbjct: 605 EKLYMTSAESRNVFGRTVFYAPSDFLTEIKEDQKEY 640


>gi|15604569|ref|NP_221087.1| ATP-dependent nuclease subunit A (addA) [Rickettsia prowazekii str.
           Madrid E]
 gi|3861264|emb|CAA15163.1| ATP-DEPENDENT NUCLEASE SUBUNIT A (addA) [Rickettsia prowazekii]
 gi|292572376|gb|ADE30291.1| ATP-dependent helicase [Rickettsia prowazekii Rp22]
          Length = 822

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 171/634 (26%), Positives = 280/634 (44%), Gaps = 39/634 (6%)

Query: 39  METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
                  +      +        +      L   F T+    +K ++++E+ KK P L  
Sbjct: 209 KRLALEQLNNIYDKVASLFTAYDLAIAPKTL---FFTKDGGKRKRLLSKELTKKYPQLLT 265

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +L+K   +   + +     ++   T     LA      Y+  K++N +LD++DLI  T  
Sbjct: 266 ELEKITAKIHHLDELRRIEELKYHTNLLTKLAYIFLKKYDSYKEENNLLDYDDLIYYTEK 325

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL  +    W+ +K + EINHILIDE QDTS  QW +I +L     V         + F 
Sbjct: 326 LLNNKTTHEWLFHKFENEINHILIDEAQDTSPTQWNIITTLITKLNV---AEKPSNSTFI 382

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD+KQSI+ F GA            +   T+  +KF  I L  S+RS  +IL     V 
Sbjct: 383 VGDDKQSIFRFQGANLHNFNLVNDQLKINLTSNNKKFKNITLEYSYRSCPEILQFTHNVL 442

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +  ++       +   +   SS     G+V +W  + +Q   +       WT   D    
Sbjct: 443 NNIKSNYPNLFLADNPL--ISSLRIHQGSVTVWPLLTNQKQKEF-----FWTLPEDDKNA 495

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
           +S+A +L  +I   I   I +  I ++   R I  KD ++LVRKR      +       +
Sbjct: 496 KSAADLLIDKIVNFIKEKIKSKGILTSTASR-ISEKDFMILVRKRD---KFSHNLIKELS 551

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
             K+ V  +DR  L ++L I DL+A  +F+L  +DDL+  C+LKSP+   SE  ++ +  
Sbjct: 552 KAKLKVEISDRINLKENLPILDLIAAAKFVLLPDDDLNLACLLKSPIIGISEQKLYTLLV 611

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            +    T++E         +S  + +   +  +I I +  +  +FF L++     R  + 
Sbjct: 612 -KKNDHTLWE--------VLSSHKDIYHKLDSIIEIYKIATAENFFDLLVNRLNLRAIY- 661

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
              G    D++++ L  +     +  +SLQ  I+  E     IKR    + +++R+MTVH
Sbjct: 662 ---GKNTDDMINDLLTLSKDYANSIDNSLQGFIAWFENNDIYIKRDM-EHSDKIRVMTVH 717

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE+P V L D             +     + DD G   +   S+     + +L + 
Sbjct: 718 GSKGLEAPFVILCD--------STTLPIRSNKFIWDDNGQMFFSLNSEDTPAFLQELKES 769

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
            K    +EY RLLYV MTRA D LIIC  SN   
Sbjct: 770 EKLKDLQEYMRLLYVAMTRAQDHLIICGFSNKDT 803


>gi|293400338|ref|ZP_06644484.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae
            bacterium 5_2_54FAA]
 gi|291306738|gb|EFE47981.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae
            bacterium 5_2_54FAA]
          Length = 1081

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 320/944 (33%), Gaps = 97/944 (10%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
              +  +   E I +      Y   S++ K    ++       L   Q        +    
Sbjct: 223  LAVECSRYEEGILRIQELYRYRYDSEVKKA---ALVEQKVQALPSLQETLAKRDYEGFRL 279

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
             F  ++   L      +       + K+S +L+++L        +        K      
Sbjct: 280  AFQSIAHGILPPSPDKEDKEYV-HLRKQSQELEDRLLGLLFSEQQFIKDMQALK--PYVR 336

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
              + + K     Y   K++  V+DF+D+     ++L+ +D    +  +  ++   I++DE
Sbjct: 337  KLIEMVKDYRRSYARIKQEQAVIDFDDMEHYALEILQCKD--GQVAQRYREQFTEIMVDE 394

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QD++ +Q  +++S+  +             +F VGD KQSIY F  A+P  +       
Sbjct: 395  FQDSNDVQNTLVQSICRE-----------NNVFRVGDIKQSIYGFRHAKPSLM------- 436

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS-SRIG 303
            +      G    +I L  ++RS   I+   + +F    N  G S          +     
Sbjct: 437  RGIIEQQGIYDEVIYLSNNYRSKKMIVDFNNLLFKQLMNLDGFSCRYADADDVETGVAEQ 496

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                V +    +   + +         +              A  IA  I  +   +   
Sbjct: 497  LQDNVPICFHAIFHDEIKKANALILAKNDLK-----------ASYIANQILEIREKEQR- 544

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                    Q KD +VLVR       +  +   L     I    + +       A+  +++
Sbjct: 545  --------QWKDFVVLVRGNARKENMKKVFDEL----HIPYFIDVKSGFYQSSAVSLMLS 592

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEYIQKFANCGISK 480
              R I    +D++ + +L SPLF  S + I +    + +     +     + + +   + 
Sbjct: 593  ALRAIEDPHNDIALIAILLSPLFPCSAEQIAQSKLAKRQEAQKASQQAAHKVYESSFYAY 652

Query: 481  FQH----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
             +       +   EL      CS       +                +    LD      
Sbjct: 653  LKEHPIPGFQAFEELRKECFGCSLTKTLNRLYEQNNYYA---LHTSVQEKTNLDLLFEKG 709

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDT 593
               EQ     +   ++++EQ             +  + VR+M++H +KGL+ PVVFL   
Sbjct: 710  ATFEQQQAMGIHAFLNQIEQIKDAQTAEAIPIGSEADVVRVMSIHQSKGLQFPVVFL--W 767

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS-DLIKHLKKSTQEEYNRLLY 652
             +   +    K + I  S        + +P+   R  I    +     K   EE  R+LY
Sbjct: 768  SNDAMTAIEFKDLCICDSELGIALKRMELPERYVRTTIPRIAMEHKKDKEELEEEMRILY 827

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V  TRA  Q+ I                  D V D    ++ +    + +      W+  
Sbjct: 828  VATTRAQQQMHIV-----------------DCVLDLEQYNKPLTTSSIYDRGGYTSWLLQ 870

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
             +  H  +   ++   T+ Q +  Q+  K     I+    E   L  +T   K  T++  
Sbjct: 871  TFLQHPNDLFTIKEVHTLWQSLPLQEPIK-PQYHIQPYHQEVETLQFATASAKKATDIAI 929

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
             L   +    G ++HK+++ +           I     +       ++ K L      L 
Sbjct: 930  TLQKPKGMQYGTMMHKMIEALGNSTYED--TAIRQCAARLHITLSEQDVKRLHD----LY 983

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
            EN +    +    Y E+    K      + ++ G +D ++I +  I I ++KT       
Sbjct: 984  ENEVFQRCLKTTCYYELPFMVK----DGEEVLHGFMDFVAIQENGITIIDFKTDAIF--S 1037

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
             + +   +  QL +Y+K +   YPN  + C +  +   ++  + 
Sbjct: 1038 ADELITRYREQLLLYQKAMNTLYPNSKIACYIYSLHLSEMIQVS 1081


>gi|153062|gb|AAA72091.1| helicase [Staphylococcus aureus]
 gi|742312|prf||2009360A helicase
          Length = 675

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 119/711 (16%), Positives = 232/711 (32%), Gaps = 128/711 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ Q L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +         +   + + Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++   +         + I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAANEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +  N ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + +D+ +L R    + ++            +      
Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + K+         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F   H+    +L     R+       
Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                +E  R+ YV +TRA + L I   ++     +         + +   
Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636


>gi|291539996|emb|CBL13107.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis XB6B4]
          Length = 755

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 114/613 (18%), Positives = 203/613 (33%), Gaps = 116/613 (18%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           +    S  L +    +  I T+   +        +  ++DE I   +     +   S+  
Sbjct: 119 YDADDSKSLMKDICKRLEIDTKIYKE--KSFLAAISSAKDELITPTELMQ--RALTSSDY 174

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           +      +   Y+EA  KN  LDF+DLI+ T +LL+       ++    +  ++I++DE 
Sbjct: 175 AKRKQAEVYREYQEALHKNNALDFDDLIMKTVELLQSDPE---VKNYYQERFHYIMVDEY 231

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+IR L   +          + L  VGD+ QSIY F GA    +L  ++   
Sbjct: 232 QDTNTAQFELIRLLAGKY----------QNLCVVGDDDQSIYKFRGANIYNILNFEKHFP 281

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I+L  ++RST +IL   + V +     +  +                 
Sbjct: 282 --------DAKTIKLEQNYRSTQNILNAANSVIANNVGRKSKT----------------- 316

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW                 +                A  IA  I+  +        
Sbjct: 317 ----LWTANDEGKKIDFEQFNTGY--------------EEADYIARDIAGGVRNG----- 353

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D  VL R    + L             I               +KDL+A  
Sbjct: 354 ----DYHYGDYAVLYRTNAQSRLFEERF----IVSNIPYKIVGGVNFYARKEVKDLLAYL 405

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI-----S 479
           + I +  DDL+   +L  P        + ++         + Y+ +++           S
Sbjct: 406 KTIDNARDDLAVRRILNVPKRGIGATTVNRVSDYAESYDISFYDALKRADEIPSIGKAAS 465

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536
           K +  +  I       +F S  D    ++      ++  +   +E     + +DE L+  
Sbjct: 466 KVKPFVNLIQVFRSKLEFISISDLLREVIEETGYVKELEAEGTDEAEARIENIDELLSKV 525

Query: 537 LRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           +  E++    +L   + E+         +   + + V +MT+H+AKGLE P V+L     
Sbjct: 526 VSYEESEEHPTLSGFLEEVALVADID--SLEDDSDYVVLMTLHSAKGLEFPKVYLAGMED 583

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                    +         EE  RL YVG+
Sbjct: 584 GLFPS-------------------------------YMSITSDDSSEQLEEERRLAYVGI 612

Query: 656 TRASDQLIICKHS 668
           TRA  +L I    
Sbjct: 613 TRAMKELTITCAK 625


>gi|169237545|ref|YP_001690749.1| putative helicase [Halobacterium salinarum R1]
 gi|167728772|emb|CAP15640.1| putative helicase [Halobacterium salinarum R1]
          Length = 1211

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 149/898 (16%), Positives = 295/898 (32%), Gaps = 81/898 (9%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNT------YKMFKSTLASLTLAKYLNAHYEEAKKKN 144
                DLK+ +           D   T             LA +     + A Y   K + 
Sbjct: 310  DVYDDLKDTIDAVIAAVEPHADAVETTPGELEANSAHYALALMRAFDDVLAAYTAEKDRR 369

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
              LDF D+I  T + L+  D    +  ++ ++   +++DE QDT   QWE+++ LT    
Sbjct: 370  DTLDFPDVIETTLEFLRANDA---VTERLREQFAAVMVDEFQDTDPRQWELVKLLTGV-- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK---------F 255
                   +   +F VGDEKQSIY F GA+       +R  Q      G            
Sbjct: 425  ----DEGTASNVFLVGDEKQSIYGFRGADVTTFGNARRELQTVNEARGVDDVPDGEAESP 480

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR-----IGQVGTVQL 310
            + +EL  +FR+  + L+ ++++F      +G + +         +          G    
Sbjct: 481  TALELSGNFRTLDEPLSFLNELFEYLLQPEGDTHEPYEAPPQELTTQRDRIEDIEGLTGS 540

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG---TDTIFSNGK 367
             E +    D+    +             + +    A+ +A  ++++            G 
Sbjct: 541  VEYLAVPDDADTAAELFGDDHPVAEGALDHTIEAEAQALAARLTHLFDDPPQVQDPDTGV 600

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R     D  +L+R+R                Y I           D   ++ L  L R 
Sbjct: 601  HREATPDDTAILLRRRTHLDRYQRALEE----YDIPYTVVGGVGFYDTPEVQALTNLLRV 656

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +   EDD+S   +L+SPLF F++D +        E ++V++     A     +       
Sbjct: 657  LGDPEDDVSLYGVLRSPLFGFADDRLAP---AVAEADSVWDA---LAETDDPQLADAFDL 710

Query: 488  IHELIHIAQFCSPHD--------FFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLR 538
            +     ++   +P +          + ++              G + I  +++F +    
Sbjct: 711  LSTWRTLSGCAAPSENGVLPWNRLLSRVIDDTGYLASVSADERGRQAIANVEKFRDQVRT 770

Query: 539  NEQNSYSSLQELISELEQYPP----TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              +N   +   L+  +++         +     +   VRIMT+H+AKGLE P+V + D G
Sbjct: 771  WSENGVHTAAGLLHRIDRQAEIDPREGEADIPGDAEGVRIMTIHSAKGLEFPIVTVPDLG 830

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN---------IVSDLIKHLKKSTQE 645
            S +   + +     +  ++     P                    +     +  +   + 
Sbjct: 831  SDLNFGRSVDDHGYVRLVDGTDDAPPVPAVGGPDPGDAFSIEKTAVHEYADRQSRPQERA 890

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-----------QRTWYDMVYDSFHNDER 694
            E  RLLYV  TR  D L++C   +   ++                 W D V  +  +   
Sbjct: 891  ESKRLLYVACTRTRDHLLLCGTHDIDVDESGAIELGEPAAFDDADRWRDWVQPALLDGAL 950

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP-KKLFSPIKNDINE 753
            V +         +   A       P       ++       E  IP     +P K     
Sbjct: 951  VAEAIRDGQARGEMDEASYTVRRPPRPVDWHTDDDAVDPALEISIPSPPSLAPAKRIAAT 1010

Query: 754  PYILNPSTIDTKGKT-NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
              +   +   T G + +     +       G ++H++ ++    P  +    I       
Sbjct: 1011 TLVNAVADASTDGHSYSQREESAGLSPTTFGTVVHRINELRP--PRDEWSTLIHRLSRMT 1068

Query: 813  AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
             ++    + +  +      +    +    S     EV     +     +  I+G ID++ 
Sbjct: 1069 GEVPTEADVREAVDHAADAV--EFVDHIESGSQLQEVHDEYSVVARIDESRIAGYIDRLL 1126

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            +      I +YKT+       + +   +  Q+  Y   L      + +   L +  E 
Sbjct: 1127 VMPDAFHIIDYKTNDLSATTSDELADHYRPQMLAYALALLQHDQTRDVRASLRFTDEG 1184


>gi|325479866|gb|EGC82951.1| putative ATP-dependent nuclease subunit A [Anaerococcus prevotii
            ACS-065-V-Col13]
          Length = 1121

 Score =  318 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 149/937 (15%), Positives = 319/937 (34%), Gaps = 124/937 (13%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKN-----IITQEINKKSPDLKEKLKKSQDEFIK 109
                 +  +     +           +K+        +       +  +++ K       
Sbjct: 252  DLLIEKDWDRFIKNIQKISFGAIRKSKKDNIEDYDFIKNTRDNYKNSLKEMGKFVKNTDS 311

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            +       K F+       L K     Y+  K++   LDF D+     DL+   +     
Sbjct: 312  VTIEIFVKKEFEILSEINKLVKDFITTYQALKEEKSYLDFSDMEHKFIDLIDIDEA---- 367

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
            R K+    ++I  DE QD++ IQ  +I +L  +             LF VGD KQSIY F
Sbjct: 368  REKLRSSFDYIFFDEYQDSNEIQNYIIEALKGED-----------NLFFVGDVKQSIYGF 416

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
              AEP+  L +     +   +       I L  +FRS  DIL   + +F      +    
Sbjct: 417  RRAEPRLFLEKLETYDESNNSL-----RINLNKNFRSEKDILDFDNFIFDRLMTKESSDI 471

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            D             + G  +L     ++ +++              +            +
Sbjct: 472  DY------------KNGGHRLNPAKDTKTENKKV-----------HVNVIDQDIAEEDYL 508

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
               I  ++                KDI +L+R    + L     +      +I    +  
Sbjct: 509  VDLIEEIVSDG----------YDYKDIAILLRSGTKSYLYEEAFK----KAEIPFFNDIS 554

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
             +    + +   + + +++++ +DDL+ + +L+S +FNFSEDD+ KI         V  +
Sbjct: 555  KVSFGAVEVSFFINMLKYLVNPKDDLTLLSILRSEIFNFSEDDLVKIRLASDSYSFVKAF 614

Query: 470  I-QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVID 527
                  +  ++K         +L HI+   + ++F   +       +  ++R    E I 
Sbjct: 615  ESYDNDDELVAKINDFNTIFTDLSHISSLVNLYEFGNYLFEKTGFYKFLLARDRAEERIA 674

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAK 581
             ++ F++     ++++ + L   IS ++             R  S N N VRIMT+H +K
Sbjct: 675  NVEGFIDLMEDYDRSNDNGLYGFISYVDKLSKYRSDDMKTSRDLSENENLVRIMTIHKSK 734

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVV L +   +  +    + +     L     +  +  + +  +   + ++  + +
Sbjct: 735  GLEFPVVILAEASKRFSNQDLKQAIVFDDDLGIGINLSDYDNKLRFPSIKKNLILDRITE 794

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------RTWYDMVYDSFHNDER 694
            + ++E  R+LYV MTRA ++L I  + N     K +          + D +      D+ 
Sbjct: 795  NNKKEEMRVLYVAMTRAEERLYITGNRNLKTINKLDLRRDFLKMSNYLDWILAILSTDKV 854

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--------EQKIPKKLFSP 746
             + +      +     +         +        I + ++          K  +     
Sbjct: 855  SEDLFDNYETDLLGDFSEINIITEASSIDKYENTDISEFLEDDYVNSEVYIKFKEIFDKA 914

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESL-------LSDNQTFNR----------------- 782
                 +    +  S  +     +            SD    +                  
Sbjct: 915  YPYTEDTNESIKKSVTEISKDFDPSMDGYSLPTYESDLIATDFKKPNFIEDVKVYKPVDK 974

Query: 783  GLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
            G IIHK  Q +      E++    +     +       K    +   +     +P +   
Sbjct: 975  GTIIHKAFQALEFKDYDENEISKSLDKLIAERKIDKDTKNIVEI-EKLLAFFNDPYIKKM 1033

Query: 841  M--SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
               + +   E S   +I     D  ++G+ID +     ++ + ++KT       +     
Sbjct: 1034 SKEAKNIRKEESFLMEI----DDYYVNGQIDLLFEMDNDLVLIDFKTDRKKRDGL----- 1084

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             +  Q++IY++ ++++   K    ++ + +  +   I
Sbjct: 1085 -YDRQIAIYKEAIEEALGKKVKKSMIYWYNFKEFSEI 1120


>gi|187776812|ref|ZP_02993285.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC
           15579]
 gi|187775471|gb|EDU39273.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC
           15579]
          Length = 738

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 106/575 (18%), Positives = 196/575 (34%), Gaps = 116/575 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K N  LDF+DLI  T +L K    +        ++  +I++DE QDT+ 
Sbjct: 170 ADAYILYQKKLKTNNALDFDDLIYKTVELFKTNKEA---LEFYQRKFKYIMVDEYQDTNK 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L           S  R +  VGD+ Q IY + GA+   +L  ++        
Sbjct: 227 SQYELVKLLA----------SVHRNICVVGDDDQCIYEWRGADISNILNFEKDY------ 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             ++  +I+L  ++RS  +IL   ++V       +                         
Sbjct: 271 --KEAKVIKLEQNYRSKGNILNAANEVIKNNSQRKNKVL--------------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +++   + + + +Y D           A+ +A  +  +I             
Sbjct: 308 ------RTENENGNKIKVFRAYSDIDE--------AKFVASEMKKIIKDSDK-------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VL R    + +   +         I           D   IKDLMA  + I +
Sbjct: 346 -SFNDFAVLYRTNAQSRIFEDVF----MKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483
             DD+S   ++  P  +  +  + K+    +E +          + I   +   I+  + 
Sbjct: 401 PLDDISLRRIINVPKRSIGDATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKK 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  ++  I      S       IL      ++  S    +    ++ L E ++     E
Sbjct: 461 FVSIMNSFIRKKDEISVSALIKEILEETGYLKELKSSKNPDDVSRVENLKELVSAAADFE 520

Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++   SL   + ++             N + V +MTVH+AKGLE PVVF+V   + +F 
Sbjct: 521 KESEDKSLGMFLEKVALVTDIDNYD--ENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                        EE  RL YV +TRA 
Sbjct: 579 GTQSLSDP----------------------------------KEMEESRRLCYVAITRAK 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
           +QL I          ++      D V +   + + 
Sbjct: 605 EQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKD 639


>gi|317497585|ref|ZP_07955903.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895144|gb|EFV17308.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 733

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 102/571 (17%), Positives = 183/571 (32%), Gaps = 114/571 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++  K N  LDF+DLI  T +L +       +     +   +I++DE QDT+ 
Sbjct: 169 AQIYKEYQKQLKANNALDFDDLIFKTVELFQFHPE---VLDYYQERFRYIMVDEYQDTNT 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ++++  L   +          + L  VGD+ QSIY F GA  K +L  + +  +    
Sbjct: 226 IQFQLVSMLARKY----------QNLCVVGDDDQSIYKFRGANVKNILNFENVFPEAV-- 273

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I+L  ++RST +IL   ++V    +  +                        L
Sbjct: 274 ------TIKLEQNYRSTKNILNAANEVIKHNKGRKTKK---------------------L 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W                 +  Y     +       AR+I + I ++              
Sbjct: 307 W-------TENEEGDLIEFHQYGTEYEE-------ARKIIHEIEDLSKEG---------- 342

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              K++ +L R    + +             I               +KD+++  + + +
Sbjct: 343 YDYKNMAILYRTNAQSRVFEESF----MIKNIPYRIVGGTNFYQRKEVKDILSYLKVVDN 398

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKFQHV 484
             DDL+   ++  P        I KI         +  +      +         K    
Sbjct: 399 GLDDLAVRRIINVPRRGIGAATIEKINVYAVEHNISFLDACFSADSIDTLGNAKKKINGF 458

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
              I E     Q  S  + F  I           +    E     + ++E LN  +  EQ
Sbjct: 459 ADLIREFRRKMQEGSLEELFKYITDETGYIANLKAEETEEAEGRIENINELLNKVVTYEQ 518

Query: 542 N-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               +SL EL+ E+             + N V +MT+H+AKGLE P VF+      +F  
Sbjct: 519 EAEEASLSELLEEIALVADIDN--LEDSDNRVVLMTLHSAKGLEFPYVFICGMEDGIFPS 576

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                      + ++                                 RL YVG+TRA  
Sbjct: 577 YMTVMSEDDDDMEEE--------------------------------RRLCYVGITRAKK 604

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           +L +        + ++        + +    
Sbjct: 605 KLYLSAAKRRMMQGRTQFNKVSRFIDEIPEQ 635


>gi|259502070|ref|ZP_05744972.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041]
 gi|259169983|gb|EEW54478.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041]
          Length = 1386

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 146/1083 (13%), Positives = 310/1083 (28%), Gaps = 184/1083 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSME----TGNPTILKKAQTLQQASQTQCIEERFS 67
              E     L           ++  +  ++          L++    ++           +
Sbjct: 329  DKETALARLDQFSARFQELRDRAAAAQLDGKTLASLDKDLQQFAQARRLLVPDTWNAVRA 388

Query: 68   LLSSF-FLTQKFTPQKNIITQ-------EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
            ++    F T    P+ + +            +        ++ S   + + + +  +++ 
Sbjct: 389  IIRGAKFRTMAGKPKGDPVAAEVYATLTASRQALKKQLTGIQDSYFAYDEDQFQEISHQS 448

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY---KIDQE 176
             +       +       Y++AK    VL+F DL      +L         +     + + 
Sbjct: 449  QRLLTKLSKVTVAFRRAYQQAKLSRHVLEFSDLEHYAYQILTPPADQPDWQELVANLQRH 508

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               I++DE QDT+ +Q  ++  LT         +     LF VGD KQSIY F  A+P  
Sbjct: 509  YQEIMVDEYQDTNRLQEAILTRLT---------NPDQHNLFMVGDVKQSIYRFRQADPSL 559

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTT 294
             L + +  Q+     G     I L  +FRS +++    + +F+    A    +  D    
Sbjct: 560  FLHKYQRYQQ----PGAGDEAIVLGENFRSMSNVTDFTNLLFAQLMGADVGEIEYDQAAH 615

Query: 295  IRHRSSR----IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
            +++ ++       Q    ++     +   +      +          ++   +   + + 
Sbjct: 616  LKYAATYYETADNQPQPTEVMLYDANADQAAIKESPDQH--------EDDKLAGELKMVG 667

Query: 351  YTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
              I  M+  +    +    + R +   DI++L R +     I        +  +I +  +
Sbjct: 668  MRIKQMVANEERIFDPATKQLRPVNYGDIVLLERTKS----INNTLMEEFSKLEIPLTVH 723

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            D         ++ +MAL R I +   D+  V +L+SPL + S  ++  I  Q    +   
Sbjct: 724  DVESYFQATEVRVMMALLRLIDNPHQDIPLVAVLRSPLVSLSTKELAFIRLQNRTADYYG 783

Query: 468  ---------------------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                                       +           K  H +  +      AQ  S 
Sbjct: 784  ALQSFKSNYANADRHLIKPELLNATATDDQPDPVAALYDKVSHFLDQLATFRQTAQQQSL 843

Query: 501  HDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             D    I               G +    L  F       EQ+S+  L + I  +E+   
Sbjct: 844  VDLIWQIYNETGYLDYVGAMPGGAQRQANLHAFYQRAHDYEQSSFKGLYQFIRFIEKMQE 903

Query: 560  TIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              K    A      N V +MT+H +KGL+ P+VFL+D           +   +       
Sbjct: 904  HDKDLGVAPTQLVKNTVNVMTIHGSKGLQFPIVFLIDATHGFNQQATRETAVVDAVNKVG 963

Query: 616  PGIPIWIPQSKSRN---NIVSDLIKHLKKSTQE--------------------EYNRLLY 652
                              I++ + +  +                         E NR   
Sbjct: 964  IEYTDQEHVRYDTPQRQAIINAVQQGERAEDLRVLYVALTRAEQRLVITGSFNEENRRQN 1023

Query: 653  VGMTRAS-DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK-------------- 697
            +    A   +           + +   R++ D +  +       +               
Sbjct: 1024 LASAWARWQKAFQSPAILLGPQLRVTARSFMDWIGLALARSAAFRAKQVAPARMELDESA 1083

Query: 698  --------------IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                               S    +           +  P+  ++T     +  +I + L
Sbjct: 1084 MADYQHYQSLFTGQRFTVASYTAADVAQQLAGLQAQQAAPVVTDQTAIDQQELARIKQLL 1143

Query: 744  FSPIKNDINEPYILNPSTID-----------------------------------TKGKT 768
             +     +        S  D                                        
Sbjct: 1144 GARYPYPVATKTTAYQSVTDVKRLFEYPDNAVEAQWDYEQQQREKQAQGIYFNQHFAEPA 1203

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK---NAKLWPAKEYKNLL 825
             ++           G   H + Q +           + +   +      L PA   K  +
Sbjct: 1204 FIKQADEQPAATTIGTATHLVFQKLPLTAGPVTPASVQAEVQRLVDQGLLTPAVAAKINV 1263

Query: 826  LSITRLLENPMMTTAMSC--DSYSEVSVSGKINCPK----------KDIIISGRIDQISI 873
              +    +  +    ++     + E   +  +N  +          + +++ G ID    
Sbjct: 1264 TGVAGFFQTAVGQQILAAPEHYHREEPFAMVMNGAELFKEIKTSNNEQVLLHGIIDGYLE 1323

Query: 874  SQQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            +   I + +YKT H  P   +  I   +  QL++Y++ L    P   +   L  V   + 
Sbjct: 1324 TPTGIILVDYKTDHLRPGFGVAEIVARYRGQLNLYQEALSLMKPLPVVQKGLYLVESEQF 1383

Query: 933  FII 935
              I
Sbjct: 1384 ITI 1386


>gi|170017499|ref|YP_001728418.1| ATP-dependent exoDNAse beta subunit [Leuconostoc citreum KM20]
 gi|251764532|sp|B1MZM2|ADDA_LEUCK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|169804356|gb|ACA82974.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Leuconostoc citreum
            KM20]
          Length = 1236

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 146/926 (15%), Positives = 286/926 (30%), Gaps = 134/926 (14%)

Query: 113  RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
            ++   +  +     +TL +   + +  AK+   ++DF DL     ++L        +   
Sbjct: 339  QYVEKQATELVNTLVTLTQACQSAFTTAKRDAQLVDFPDLGALALEILNDDMTRKTV--- 395

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
               +   IL+DE QD + +Q  ++  +           S+   ++ VGD KQSIY F  A
Sbjct: 396  -SGQFQEILVDEYQDINQLQETLLTKV-----------SNGHNMYMVGDVKQSIYGFRQA 443

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            EP    R+ R             S IEL  +FRS  ++  V + +F+   + +      T
Sbjct: 444  EPTLFARKYRQF----ALPDNPDSRIELADNFRSQNNVTRVTNLIFTQLMDEKLGDIAYT 499

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
               +    +      V     +           ++      D   +         ++A  
Sbjct: 500  GEAKLVP-KANYPTDVTPVFNMTIIKQPNVTTSED-----EDESQEFEKRQAQYAQLANQ 553

Query: 353  ISNMIGT---DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I ++  T   D        R +Q  DI +L R +     +    R       I    +  
Sbjct: 554  ILSLRDTTIFDRKAEPAGMRPVQYGDIAILTRSKTGYIDLVATLR----QAGIPTQVDSV 609

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
                  + +  ++ + R I +   D+    +L+SP+F +SE+D+  +     + +     
Sbjct: 610  GNYFQTMEVYLMLDVLRVIDNPHQDIPLAAILRSPMFGYSENDLAAVRLADKKHDYWSA- 668

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDV 528
                      + Q VI  I +   +A           I               G +    
Sbjct: 669  -LTVFAQADQRSQTVIDLIKKWHQLAIQNDLVALIWAIFDDTSWLDYVAGMPGGAQRQAN 727

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLE 584
            L    ++    ++N+++ L   I  +EQ      +       AN   VRIMT+H +KGLE
Sbjct: 728  LHALYDYARTYQENTHAGLFRFIRYIEQLQENDGQLGEAPQEANEQAVRIMTIHASKGLE 787

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             P+VFL +      +     KM I  +                       + + LK+ + 
Sbjct: 788  FPIVFLPEFDKSFNTQDLSGKMLIQKNAGIGLEYLQPEALVAMPTLKKLTVQQALKRQSW 847

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEK------------------------------ 674
             E  RLLYV +TRA  Q+ +         +                              
Sbjct: 848  SEEMRLLYVALTRAEQQIYVVGTVKLDENEENQRLIALWQRAKETSGQFLAEDLRLSAKS 907

Query: 675  ----------KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN--- 721
                      ++        + D         +  L + I+       +     P+    
Sbjct: 908  YFDWLLISLARTKNDDLESWLGDGHLPHVLGPETTLDSQISVRFINESDVVIPEPQGNET 967

Query: 722  -TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL------ 774
                       +     K       P +         + S +    +    + L      
Sbjct: 968  KEITRASTYQAEDFARAKAILDYQYPFQQATRTAAYQSVSEMKRLFEDPDRANLKTLNVL 1027

Query: 775  --------------------------SDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFIT 806
                                          +   G   H +LQ++    +  H+    + 
Sbjct: 1028 ENGQLQPANELVSDKLVLPTFMTDGSQKPSSAAVGTATHLMLQLLDFKQIQTHQSLTALR 1087

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT--AMSCDSYSEVSVSGKINC------- 857
                   +L         +  I   L+ P        +     E + +  +         
Sbjct: 1088 DDLVTQGRLTAPVAALIDIDQILNFLQTPFAQRLCLHADSLRREATFAMIMPANQIYEHV 1147

Query: 858  -PKKDIIISGRIDQISISQQN--IFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKI 910
              +  +++ G ID   I ++   I +F+YKT       +E     +   +  QL++Y++ 
Sbjct: 1148 HDQASVLVHGIIDGYFIDKKTKSITLFDYKTDFVRHGRVEEDISKMMVRYRGQLTLYKQA 1207

Query: 911  LKDSYPNKSL-VCLLIYVSEPKVFII 935
            L   +P+ +     LI ++  +V  I
Sbjct: 1208 LMQEFPDYTFYEPQLIILNVGRVIPI 1233


>gi|228963386|ref|ZP_04124547.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796280|gb|EEM43727.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 584

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 107/549 (19%), Positives = 192/549 (34%), Gaps = 114/549 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y++   KN  LDF+DLI+ T  L ++      +     ++  +I +DE QD
Sbjct: 7   KLTSDVYTEYQKRLLKNNSLDFDDLIMTTIQLFER---VPEVLEFYQRKFQYIHVDEYQD 63

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L   F          + L  VGD  QSIY + GA+   +L  ++  +  
Sbjct: 64  TNKAQYLLVKHLAARF----------KNLCVVGDSDQSIYRWRGADISNILSFEKDYEN- 112

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RS+ +IL   + V     N +                      
Sbjct: 113 -------AQVILLEQNYRSSQNILNAANAVIEKNTNRKPKK------------------- 146

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW              + S+        +       A  +A  I + +          
Sbjct: 147 --LW-------TDNQVGSKISYYRAATEKDE-------AYFVAKKIRDDLQMGKR----- 185

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  VL R    + ++  +         I           D   IKD++A  R 
Sbjct: 186 ----KYTDFAVLYRTNAQSRMVEEIF----LKSNIPYKIVGGTKFYDRKEIKDILAYLRL 237

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFAN-----CGISKF 481
           I + +D++SF  ++  P        I K I        ++     +  +           
Sbjct: 238 IGNPDDEISFARIINMPKRGIGATSIDKIINYGVQNGISLTAVFDEIEHVGVSAKITKAV 297

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +     +H  +++ ++ S  +    ++     R    +    E     + LDEFL+ T  
Sbjct: 298 KEFASLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNERSLEAEGRLENLDEFLSVTQT 357

Query: 539 NE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            E Q+   SL   +++L       +         EV +MT+H+AKGLE PVVF+V     
Sbjct: 358 FESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILMTMHSAKGLEFPVVFIVGLEEG 417

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H                                      +++   +E  RL YVG+T
Sbjct: 418 IFPHTRSL----------------------------------MEEDEMQEERRLAYVGIT 443

Query: 657 RASDQLIIC 665
           RA ++L + 
Sbjct: 444 RAEEELYLS 452


>gi|157691415|ref|YP_001485877.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
 gi|157680173|gb|ABV61317.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032]
          Length = 740

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 121/749 (16%), Positives = 234/749 (31%), Gaps = 132/749 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++ Q +            
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQAILGPGADDIWIST 91

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110
           F  +    L +            I   S  L       ++                    
Sbjct: 92  FHSMCVRILRRDIDRIGVNRNFSILDTSDQLSVIKNILKERNIDPKKFDPRSILGSISSA 151

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++     + +  T       +   +   Y++   KN  LDF+DLI+ T  L ++      
Sbjct: 152 KNELIDAEEYAKTAGDFYDQVVSDVYTDYQKRLLKNQSLDFDDLIMMTIRLFER---IPE 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ +++ L + F          + +  VGD  QSIY 
Sbjct: 209 VLEHYQRKFQYIHVDEYQDTNRAQYMLVKLLAQRF----------QNICVVGDSDQSIYR 258

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++              +I L  ++RST  IL   + V     N +  +
Sbjct: 259 WRGADITNILSFEKDYPSS--------EVILLEQNYRSTKRILNAANTVIQNNSNRKPKN 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        + 
Sbjct: 311 ---------------------LW-------TENDEGAKIAYYRADNEFGEG-------QF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I  +  +            +  D  +L R    + +I            I      
Sbjct: 336 VAGKIHQLHQSGKR---------KLSDFAILYRTNAQSRVIEETL----LKSNIQYNIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKD++A  R + + +DD+SF  ++  P        + KI         +++
Sbjct: 383 GTKFYDRKEIKDILAYLRLVANPDDDISFARIVNVPKRGIGATSVDKIAAYAEMNDLSMF 442

Query: 468 EYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E + +           +      + I ++ ++  + S  +    IL     R+       
Sbjct: 443 EALAQVDFIGLSARAANALDEFKQLIDQMTNMQDYLSVTELTEEILEKTGYREALKVEKT 502

Query: 523 NEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMT 576
            E     + +DEFL+ T    EQN   SL   +++L       K       + + V +MT
Sbjct: 503 IEAQSRLENIDEFLSVTKNFEEQNEDKSLVTFLTDLALVADIDKLDENEEEDQDAVILMT 562

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE PVVFL+     VF H                                    
Sbjct: 563 LHAAKGLEFPVVFLMGMEEGVFPHSRSL-------------------------------- 590

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             ++ +  EE  RL YVG+TRA ++L +      +   ++N       + +   +     
Sbjct: 591 --MEDAEMEEERRLAYVGITRAEEELYLSSAKMRTLFGRTNMNLESRFIREIPADLLDNL 648

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725
             K        +                +
Sbjct: 649 NEKKETKTPFGQTRERPQRRGPVSRPQTQ 677


>gi|224476962|ref|YP_002634568.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421569|emb|CAL28383.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 731

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 117/712 (16%), Positives = 234/712 (32%), Gaps = 127/712 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKGVSPYNVLAITFTNKAAREMKERVEKLVGEEAQAIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK+                   +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKRENIDPKRYEPRMFIGAISNL 147

Query: 111 RDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    + ++T     +   +   Y+    +N  LDF+DLI+ T  L ++      
Sbjct: 148 KNELKTPEDAVAEATDFMSDMVARVYEGYQRQLSRNAALDFDDLIMTTITLFER---VPD 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L + F          + L  VGD  QSIY 
Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNRAQYTLVQLLAKKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +                I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPN--------AKTIFLEQNYRSTKVILNAANEVIKNNTERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +    ++ ++        +       A+ 
Sbjct: 307 ---------------------LW-------TANNEGKKINYYEAVTEKDE-------AQY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I      +              D+ +L R    + ++            I      
Sbjct: 332 VVKEIMRQQRENNK---------SFNDMAILYRTNAQSRVLEETF----MKANIPYTMVG 378

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R + +  DD+S   ++  P        + KI    +    +++
Sbjct: 379 GHKFYDRKEIKDLLSYLRLVANSNDDISLQRIINVPKRGIGPTSVEKIQNYAQQNDISMF 438

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK            I  LI   +F    +    IL     ++       
Sbjct: 439 DALAEADFIGLSKKVVKEALVFYNLISNLIKEQEFLEITEIVEEILEKSGYKEMLERDQS 498

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ ++EF++  +  E+N     Q LI+ L           +   N V +MT+H+
Sbjct: 499 LESRSRLENIEEFMSVPMDYEKNIPLEEQSLINFLTDLSLVADIDEADIENGVTLMTMHS 558

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 559 AKGLEFPIVFIMGMEESIFPHIRS--------------------------------IKSD 586

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            +   EE  R+ YV +TRA ++L +   ++ +   +         + +   +
Sbjct: 587 DEHEMEEERRICYVAITRAEEELYLTHATSRTLFGRIQSNAESRFLKEIPED 638


>gi|160942246|ref|ZP_02089555.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434803|gb|EDP12570.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC
           BAA-613]
          Length = 780

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 120/697 (17%), Positives = 232/697 (33%), Gaps = 145/697 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV+  N             + ++   L            
Sbjct: 27  GAGSGKTRVLTHRVAYLIEEKQVNPWNILAITFTNKAAGEMRERVDQLVGFGAESIWVST 86

Query: 66  FSL--------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEK-----LKKS 103
           F                 ++ F       QK ++    + ++  +   KE+     +  +
Sbjct: 87  FHSTCVRILRRHIEYLGYTTNFSIYDSDDQKTLMKQVFKAMDVDTKQFKERSVLGTISSA 146

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           +D+     +                    +   Y++  KKN  LDF+DLI+ T +L +  
Sbjct: 147 KDKLTGPEEFLLNAGQDFRQRRI----GEIYKEYQKRLKKNNALDFDDLIVKTVELFQNN 202

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + +     +   +I++DE QDT+L Q++++  L   +          R L  VGD+ 
Sbjct: 203 ---SEVLNYYQERFKYIMVDEYQDTNLAQFKLVSLLASKY----------RNLCVVGDDD 249

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY F GA+   +L  + +             +I+L  ++RST +IL   + V      
Sbjct: 250 QSIYRFRGADIGNILSFEEMFP--------GAKVIKLEQNYRSTQNILNAANGVIRHNRG 301

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            +  +                     LW        +        +  +  +  +     
Sbjct: 302 RKDKT---------------------LW-------TANGEGDLIRFKQFDTAREE----- 328

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A  +A  I +                  ++  VL R    + L+          Y + 
Sbjct: 329 --ADFVAREIRD-------------SGYAYQEQAVLYRTNAQSRLLEER----CIFYNVP 369

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHE 462
                         IKD++A  + I +  DDLS + ++  P        + K+       
Sbjct: 370 YRLVGGVNFYQRKEIKDILAYLKTIANGVDDLSVLRIINVPKRGIGATTMGKVTIFASEH 429

Query: 463 TETVYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQ 515
             ++Y+ +++            K    I  +      AQ    +  D    I+     +Q
Sbjct: 430 GMSLYDALREARQIPGLGKAAEKIGAFIGQMESFRARAQSDDYTIQDLIEGIMDETGYQQ 489

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNE 571
           +  +    E    ++ ++E +N  +  E+ + + SL E + ++             + N 
Sbjct: 490 ELEAEGEVESQTRLENIEELVNKAVSYEEDSEHPSLDEFLEQVALVADIDNMD--ESENR 547

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H+AKGLE P V+LV     +F                                 
Sbjct: 548 VTLMTLHSAKGLEFPKVYLVGLEDGLFPSMMS---------------------------- 579

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
               I    K+  EE  RL YVG+TRA ++L+I    
Sbjct: 580 ----INSDDKTDMEEERRLCYVGITRAKNELVITSAR 612


>gi|167461916|ref|ZP_02327005.1| PcrA [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382982|ref|ZP_08056812.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153005|gb|EFX45465.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 776

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 117/714 (16%), Positives = 227/714 (31%), Gaps = 132/714 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   + +  +             +  +   L   +        
Sbjct: 34  GAGSGKTRVLTHRIAYLIASRKAAPWSILAITFTNKAAREMQDRVGKLAGPAAEDIWVST 93

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110
           F  +    L +  +         I   S  L                 + K  Q      
Sbjct: 94  FHSMCVRILRKDISRLGFTSNFSILDSSDQLSVIKTCMKELNIDTKKFEPKAIQAAIGTA 153

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  +  + T      +   + A Y++  K+N  LDF+DLI+ T +L K+      
Sbjct: 154 KNELVTPARYDERTGDYFKGIVSKVYALYQKKLKQNNSLDFDDLIMTTIELFKE---VPE 210

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ + + + +            + +  VGD  QSIY 
Sbjct: 211 VLDFYQNKFQYIHVDEYQDTNRAQYMLCQMIAD----------KHKNICVVGDSDQSIYR 260

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++               I L  ++RST++IL   ++V S     +  +
Sbjct: 261 WRGADITNILNFEQDYP--------DAVTIMLEQNYRSTSNILNAANQVISNNSGRKPKN 312

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       D   + + + + +  +              
Sbjct: 313 ---------------------LW------TDKGEDSKIKLYNADSEHEEGY--------F 337

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I+  I              Q  D  +L R    + +I  +         I      
Sbjct: 338 IAGEINKNIRNGK----------QYSDHAILYRTNAQSRVIEEIL----IKSDIPYQIVG 383

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKD++A  R I + +DDLS   ++  P     +  + K+         ++Y
Sbjct: 384 GIKFYDRKEIKDILAYLRLISNPDDDLSLRRIVNVPKRGIGDTTMDKVADAAAKRGMSLY 443

Query: 468 EY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                    + +    +  +     I  L  + ++ S  D    +L   + R +      
Sbjct: 444 ALLSEVDSLEISTRAKNALRDFYDMISNLNRMVEYVSVTDLTEKMLEMTEYRIELQRENT 503

Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTV 577
            E    ++ +DEF++ T+  E +N   SL   +++L             A  + V +MT+
Sbjct: 504 LESKARLENIDEFISVTMDFEKRNDNKSLVSFLTDLALIADIDTMDKEDAPQDAVVLMTM 563

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VF++     VF H                                     
Sbjct: 564 HSAKGLEFPTVFIIGMEEGVFPHSRAFTDDEELEEERRL--------------------- 602

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                         YVG+TRA  +L +      +   ++        + +    
Sbjct: 603 -------------AYVGITRAEQELFLTCARMRTLFGRTTANAPSRFLQELPEE 643


>gi|308235914|ref|ZP_07666651.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
           ATCC 14018]
          Length = 956

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 111/648 (17%), Positives = 200/648 (30%), Gaps = 131/648 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT------YKMFKSTLASLTLAKYLNA 135
           K    + +  K  D K  L   Q+        +           F +   +  L   + A
Sbjct: 221 KKFTPKLLLSKISDFKNNLVTWQENLKNYAPDYKPGASVSGASSFNAAGNADALYAAVYA 280

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+     +  +DF+DLI+ T  LL++      +     ++  +IL+DE QDT+  Q+ +
Sbjct: 281 EYQNRLSVSNAVDFDDLIMLTVKLLRQNP---QVSAYYKRKFRYILVDEYQDTNHAQYVL 337

Query: 196 IRSLTEDFFVG---------------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           IR L      G                +T     ++  VGD  QSIY+F GA+ + +   
Sbjct: 338 IRELAGVDDAGVDDYSTDSTVSSVSPDSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDF 397

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           ++             + I L  ++RST  IL   + V S   N +               
Sbjct: 398 EQDFP--------SATTIMLEQNYRSTQTILDAANAVISNNANRKPKK------------ 437

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW  +                   ++  +       A  +A  I+ + G D
Sbjct: 438 ---------LWTSL-------GKGSPIVGYVADNAQGE-------ASWVAQEIARLAGED 474

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +   DI ++ R    +  +            +           +   +KD
Sbjct: 475 ---------GVNYSDIAIMYRANSQSRSLEDAL----IKSGLPYQLVGGTKFYERREVKD 521

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN---- 475
            +A  + I + +DD++   +L  P          +I    +  + + +  + +       
Sbjct: 522 ALAYLQSIANPDDDVNMRRILNVPKRGLGARAESQITSYAKENSISFWSALSQIDKIAEQ 581

Query: 476 -----CGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
                   +  +     +  LI    A    P      +L      Q        +    
Sbjct: 582 IGISSRTFNALKSFRDLMTSLIDFMKANDSKPSKVVENVLNESGLLQDLRESKDPQDEFR 641

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGL 583
           +D L +  +     EQN+   ++   +                 +  +V +MT+HTAKGL
Sbjct: 642 VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVADSDQLPDQGEDTGKVTLMTLHTAKGL 701

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL       F H                                        +  
Sbjct: 702 EYPVVFLTGMEQGTFPHSRCVD----------------------------------NQKE 727

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
             E  RL YVG+TRA   L +   +  S   KS +      + +   +
Sbjct: 728 LCEERRLAYVGITRAKKILYVTWAAERSQWGKSAEMIQSQFLDEIPAD 775


>gi|323693634|ref|ZP_08107834.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673]
 gi|323502325|gb|EGB18187.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673]
          Length = 813

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 116/751 (15%), Positives = 231/751 (30%), Gaps = 131/751 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV+  N             + ++   +            
Sbjct: 27  GAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEMRERVDKIVGFGAESIWVST 86

Query: 66  FSL--------------LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS-QDEFIKI 110
           F                 S+ F       Q+ ++ Q   +   D K+  +++        
Sbjct: 87  FHSSCVRILRRHIEYLGYSTNFTIYDGDDQRTLMKQIFKRLDVDTKQFKERAVLSRISSA 146

Query: 111 RDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           +D   T + F+              +   Y++  KKN  LDF+DLI+ T +L +      
Sbjct: 147 KDDMITPEEFELNAGGDFREKKVAQIYKEYQKELKKNNALDFDDLIVKTVELFQN---VP 203

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     +   +I++DE QDT+++Q++++  L   +          R +  VGD+ QSIY
Sbjct: 204 DVLNYYQERFRYIMVDEYQDTNMVQFKLVDLLAGKY----------RNICVVGDDDQSIY 253

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA  + +L  ++              +I+L  ++RST +IL   + V       +  
Sbjct: 254 KFRGANIENILSFEKAFP--------GAKVIKLEQNYRSTQNILNAANGVIRNNRGRKDK 305

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +  +            +   V+  +   +  +                          A 
Sbjct: 306 TLWTAN---------DEGNLVRFLQFDTAYEE--------------------------AE 330

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I             ++   +  D  VL R    + L+          Y I     
Sbjct: 331 AIVKDIRR---------EKEETGREYSDFAVLYRTNAQSRLLEEK----CILYSIPYRLV 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                     IKD++   + I + +DDL+   ++  P        + K+         + 
Sbjct: 378 GGVNFYQRKEIKDILCYLKTIANGQDDLAVQRIINVPKRGIGATSVGKVTIFASANGMSF 437

Query: 467 YEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           Y+ + +            K     + I +        S  +    +L     +++  +  
Sbjct: 438 YDALLRVRGIPTLGKAADKIGVFTEQIEDFKARLPKMSIKELIEEVLENTGYKKEIEAEG 497

Query: 522 GNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             E    +  ++E +N  +   E     +L   + E+             + N + +MT+
Sbjct: 498 EIESETRLQNIEELINKAVSYSENEENPTLDGFLEEVALVADVDNMD--ESENRIVLMTL 555

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P V+L      +F                                     I 
Sbjct: 556 HSAKGLEFPYVYLSGLEDGLFPSSMS--------------------------------IM 583

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              K   EE  RL YVG+TRA ++L +          ++        V +        ++
Sbjct: 584 SDDKDAVEEERRLCYVGITRAREKLTLTMARQRMTNGETRYSRASRFVEEIPAWLLEQEE 643

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                S           S    +    E   
Sbjct: 644 QPSVFSRAAGRSWGGSPSASSSDRGFGEAAS 674


>gi|311114987|ref|YP_003986208.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019]
 gi|310946481|gb|ADP39185.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019]
          Length = 964

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 111/648 (17%), Positives = 200/648 (30%), Gaps = 131/648 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT------YKMFKSTLASLTLAKYLNA 135
           K    + +  K  D K  L   Q+        +           F +   +  L   + A
Sbjct: 229 KKFTPKLLLSKISDFKNNLVTWQENLKNYAPDYKPGASVSGASSFNAAGNADALYAAVYA 288

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+     +  +DF+DLI+ T  LL++      +     ++  +IL+DE QDT+  Q+ +
Sbjct: 289 EYQNRLSVSNAVDFDDLIMLTVKLLRQNP---QVSAYYKRKFRYILVDEYQDTNHAQYVL 345

Query: 196 IRSLTEDFFVG---------------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           IR L      G                +T     ++  VGD  QSIY+F GA+ + +   
Sbjct: 346 IRELAGVDDAGVDDYSTDSTVSSVSPDSTQLPQSSITVVGDSDQSIYAFRGADIRNIQDF 405

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           ++             + I L  ++RST  IL   + V S   N +               
Sbjct: 406 EQDFP--------SATTIMLEQNYRSTQTILDAANAVISNNANRKPKK------------ 445

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW  +                   ++  +       A  +A  I+ + G D
Sbjct: 446 ---------LWTSL-------GKGSPIVGYVADNAQGE-------ASWVAQEIARLAGED 482

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +   DI ++ R    +  +            +           +   +KD
Sbjct: 483 ---------GVNYSDIAIMYRANSQSRSLEDAL----IKSGLPYQLVGGTKFYERREVKD 529

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN---- 475
            +A  + I + +DD++   +L  P          +I    +  + + +  + +       
Sbjct: 530 ALAYLQSIANPDDDVNMRRILNVPKRGLGARAESQITSYAKENSISFWSALSQIDKIAEQ 589

Query: 476 -----CGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
                   +  +     +  LI    A    P      +L      Q        +    
Sbjct: 590 IGISSRTFNALKSFRDLMTSLIDFMKANDSKPSKVVENVLNESGLLQDLRESKDPQDEFR 649

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGL 583
           +D L +  +     EQN+   ++   +                 +  +V +MT+HTAKGL
Sbjct: 650 VDNLSQLQSVAAEYEQNTPDANVAGFLETTALVADSDQLPDQGEDTGKVTLMTLHTAKGL 709

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL       F H                                        +  
Sbjct: 710 EYPVVFLTGMEQGTFPHSRCVD----------------------------------NQKE 735

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
             E  RL YVG+TRA   L +   +  S   KS +      + +   +
Sbjct: 736 LCEERRLAYVGITRAKKILYVTWAAERSQWGKSAEMIQSQFLDEIPAD 783


>gi|296121632|ref|YP_003629410.1| exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776]
 gi|296013972|gb|ADG67211.1| Exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776]
          Length = 1226

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 158/969 (16%), Positives = 309/969 (31%), Gaps = 109/969 (11%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK--FTPQKNIITQEINKKSPDLKEKLK 101
              + +  + L+    +        L +   L  +       +  + + ++ + +L  +++
Sbjct: 245  KILRQIMEQLKSQQDSPEPGRLAELFAELSLQARVVGVKPDHWGSPDDHELAKELFTQVR 304

Query: 102  KSQDEFIKI--RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
                + I+     +       + +LA L++A      YE  KK    +DF+DL++ + DL
Sbjct: 305  DDCKKLIETIQLAQTEFVPYAEKSLAWLSVAGESIRDYELIKKSRACVDFDDLLVLSRDL 364

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            L+       +R  + + I  +++DE QDT  +Q +++  +            +   LF V
Sbjct: 365  LRND---LTVRQALSRSIRVLMVDEFQDTDPVQADLVEMICGKEL-------TTGKLFLV 414

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD+KQSIY F GA+P      K                + L ++FRS   IL  V+ +F 
Sbjct: 415  GDQKQSIYRFRGADPLVFRSLKSKIPAAGQ--------LPLTINFRSQPPILHFVNILFR 466

Query: 280  IPEN------------------AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
                                         +T  + +++ +     TV L + +  +    
Sbjct: 467  RVMGADYEALEPSFADEKPELERIEFLWATTDVVENKAVQGSIPSTVPLAQGLADEQARD 526

Query: 322  CNPQQESWTSYFDSLPQESS---------ASILARRIAYTISNMIGTDTIF---SNGKKR 369
                +       D   +  S             A  IA  I  ++   T      +G  R
Sbjct: 527  AADAESQDVENIDDDSRSDSGEKQTAPFLRRREADWIARRILELLADPTPRIREKSGPWR 586

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             I   DI +L R   +  +             I               I DL  L +F+ 
Sbjct: 587  TIVPGDITILFRALTNLEVYEQALEA----AGIDYYVAGGRAFFAQQEIYDLAHLCQFLD 642

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----FANCGISKFQHVI 485
              ED  S V +L+SP F FS+  I ++ ++                  +    ++ Q   
Sbjct: 643  DPEDGFSLVGLLRSPFFCFSDPLIHRLASRAGGITQSLFAEASVVSGLSPEETAQVQFAA 702

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSY 544
            + +  L+               L              G+  +  + + +    + +    
Sbjct: 703  QTLGSLVEQRDHWPLARIIRRALELTGYEAIVSQEFLGSRKLANVHKAIELARQFDLAGG 762

Query: 545  SSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            S    +    E      +   +     + + VR+M++H +KGLE PVVF+ D        
Sbjct: 763  SRAAFVTQLRESIDQESREELAATHPESSSVVRLMSIHQSKGLEFPVVFVADMNR---PR 819

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            K       +         P      + ++ +   +    + ++ EEY RLLYV  TRA D
Sbjct: 820  KTESLPPTLHPQLGALVTPSNPLGERQKHPVGQFIEIMEEAASLEEYQRLLYVAATRARD 879

Query: 661  QLIIC-KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
             LI+          K S        V+       R      +   +            H 
Sbjct: 880  LLILSAGIKGFDEGKFSPWMLVLKQVFHLETGLLRNDPWFASGHEDVKTPQEIPLIRTHH 939

Query: 720  ENTPLE--------------REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
            +                    +   +  + E     +L + ++        L+ S ++  
Sbjct: 940  QPPQFIDHRVQRQGVHKLSFPQVWNELELAESLPWPQLVADVQRGAEGRRRLSVSRLEEF 999

Query: 766  GKTNL---------------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
             + +                 + LS +     G +IH +L+        + +  +     
Sbjct: 1000 QEQSSSKLKSLVPAGELEAHSASLSRSDAELLGEMIHGVLERFEPRAAEESEKALLHRLW 1059

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-----SEVSVSGKINCPKK----D 861
               +  PA     +L    + L+    T  +   +       E+  S       +    +
Sbjct: 1060 LWCQRQPAPPGGQILEQAQQWLKTFASTELIDELAMASELNRELEFSLDWKMTGEEPKRE 1119

Query: 862  IIISGRIDQISIS-QQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKS 919
              I G ID +    Q +  I +YKT         E +   +  QL  Y   ++  +    
Sbjct: 1120 TEIYGLIDVLMKDSQDDWIILDYKTSRLAAGVTDELLLQPYRLQLGTYALAVQRLFGRLP 1179

Query: 920  LVCLLIYVS 928
                LI++ 
Sbjct: 1180 KKAELIFMR 1188


>gi|315660158|ref|ZP_07913015.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590]
 gi|315494839|gb|EFU83177.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590]
          Length = 730

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 121/717 (16%), Positives = 230/717 (32%), Gaps = 128/717 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ + L     +      
Sbjct: 28  GAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNKAAKEMKQRVEQLVGEEASVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFISAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +    +    +   + + Y+    +N  LDF+DLI+ T  L ++   +  
Sbjct: 148 KNELKTPDDAQKEANNYHEQMIATVYSGYQRQLSRNEALDFDDLIMTTIRLFERVPDA-- 205

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKMLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKSIYLEQNYRSTKTILNAANEVIKNNTERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +  N ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTNGEKIKYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   +                     DI +L R    + ++            I      
Sbjct: 332 VVREVMKHQRNGK----------SYGDIAILYRTNAQSRVLEETF----MKSNIPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R + +  DD+S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIVANSNDDISLQRIINVPKRGIGPSSVEKIQAYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK            +  LI   +F    +    IL     R        
Sbjct: 438 DALSEADFIGLSKKVTQGCIQFYDLLQNLIKEQEFLEISEIVEEILEKTGYRAMLEREQT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ LDEF++     E+N+    Q LI+ L           +   + V +MT+H+
Sbjct: 498 IESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEAQIDDGVTMMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VFL+     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFLMGMEESLFPHIR--------------------------------AIKSD 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                +E  R+ YV +TRA +QL I + ++     +S        + +   +   + 
Sbjct: 586 DDHDMQEERRICYVAITRAEEQLYITRATSRMLFGRSQSNMPSRFLEEIPEDLLELP 642


>gi|302390294|ref|YP_003826115.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM
           16646]
 gi|302200922|gb|ADL08492.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM
           16646]
          Length = 731

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 111/668 (16%), Positives = 223/668 (33%), Gaps = 126/668 (18%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L    +      +K      +       K++L+  ++   + +D                
Sbjct: 118 LIRDCIKALGLDEKKYAPTAVLNYIGRAKDRLQTPEECHDRAKDIREKA----------- 166

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               +   Y++  K++  LDF+DLI+ T +L +K      +         HIL+DE QDT
Sbjct: 167 -MSRVYELYQKRLKESNALDFDDLIMKTVELFRKNPE---VLSYYQNRFRHILVDEYQDT 222

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ +++ L E            R L  VGD+ QSIY F GA+ + +L  +       
Sbjct: 223 NRAQYVLVKLLAE----------KHRNLCVVGDDDQSIYGFRGADIRNILDFEEDFP--- 269

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  ++I L  ++RST +IL   + V S   + +  S                    
Sbjct: 270 -----DATVIRLEQNYRSTQNILDAANSVISHNFDRKQKS-------------------- 304

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW              +    +  +   +       A  IA  I  ++           
Sbjct: 305 -LW-------TENGRGDKIYLATLGNEHEE-------AFFIAREIEKLVN---------M 340

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + +D  VL R    + ++  +         +               IKD++A  R +
Sbjct: 341 KNFRFRDFAVLYRTNAQSRVLEEMM----VKMGLPYKIVGGVRFYQRREIKDILAYLRVV 396

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-----VYEYIQKFANCGISKFQH 483
            +  D++S + ++  P     E  +  +     E E      + E + + ++   SK + 
Sbjct: 397 ANPSDNVSLLRIINVPRRGIGEATVETLKLLAEEREKSVYHIMKEELAELSSRVRSKLRD 456

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
            +  I + I  A   S  D    IL      ++  +    +     + L E +   +  E
Sbjct: 457 FVDMIDDFIKKAGELSVPDLIAYILDRSGYLKELEAENTPDAQSRIENLKEMIGVAIEFE 516

Query: 541 QN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +    ++LQ+ ++E+             + + V +MT+H+AKGLE PVVFL      +F 
Sbjct: 517 KKFPGAALQDFLAEIALVSDVD--EFDEDRDAVILMTLHSAKGLEFPVVFLSGMDEGIFP 574

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H                                                   YVG+TRA 
Sbjct: 575 HSRAMFDEEELEEERRL----------------------------------CYVGITRAK 600

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L + +  + +    ++  +    + +      +  +        +++    + +    
Sbjct: 601 KRLYLTRAWSRNLYGNTSYYSASRFIDEIPARLIKEIRPGDDTLEEEEKPREDKKAEQAV 660

Query: 720 ENTPLERE 727
              P  ++
Sbjct: 661 PVKPRTQK 668


>gi|256848517|ref|ZP_05553959.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN]
 gi|256714784|gb|EEU29763.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN]
          Length = 1281

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 151/836 (18%), Positives = 281/836 (33%), Gaps = 75/836 (8%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLS----METGNPTILKKAQTLQQASQTQCIEERF 66
            ++   I +  +         +    S S    +       L   + LQ++  T   +E  
Sbjct: 220  QTLLPILRQFFDQLIADWEGLVTKASTSGFDNLAETLTGDLILVKDLQKSLTTATWDELQ 279

Query: 67   SLLSSFFLTQ------KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
            + +S     +      K  P       E+     +LK++LK  QD++ +  +R    K  
Sbjct: 280  AQISGIKFGRLKTQRFKDDPDGKAHYDELKDGRNELKKRLKTLQDKYFQYDERELRAKTA 339

Query: 121  KS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-RDVSAWIRYKIDQE 176
             +       +++ K     Y+EAK    +LDF DL      +L    D    +  ++   
Sbjct: 340  AARMMVEELVSVTKDFRQSYQEAKLARHMLDFSDLEHYAYQILTNQSDAGKQVLNELRHH 399

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               IL+DE QDT+ +Q +++  L                LF VGD KQSIY F  A+P  
Sbjct: 400  YREILVDEYQDTNRLQDDLLNQL---------HDPQLNHLFMVGDVKQSIYRFRQADPTL 450

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTT 294
             L +    Q     + +    I L  +FRS  ++    + VF+   +     +  D    
Sbjct: 451  FLDKYERYQS----SSKNDETIILAENFRSMNNVTEFTNLVFTQLMDRTVGEMPYDDQAQ 506

Query: 295  IRHRSSRIG----QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
            ++  +             +L     +  +     ++E+   Y          +     +A
Sbjct: 507  LKFAAKWYDPKEVSPVPTELMVYDANADNETIIDKEENQQRYIKLPEGSDKYAGEVWMVA 566

Query: 351  YTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
              I  M+       +   G +R IQ  DI++L R +     I      L     I VV  
Sbjct: 567  MRIRQMLDNQERIYDPELGHERPIQPADIVILERTKSPNNRIVEQFGQL----NIPVVVQ 622

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            D         ++ +++L + I +   D+  V +L+SP+   +E ++  +    H     Y
Sbjct: 623  DVQNYFKATEVRTMISLLKVIDNPYQDIPLVAVLRSPIVGLTEPEMAYL-RINHRYGNFY 681

Query: 468  EYIQKFANCGIS---------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
            E +Q F                     K    +  + +    AQ  S  D    I     
Sbjct: 682  EAVQFFTQQDPEQWSATTDVDLEKLHVKLSRFLDRLTKFKVTAQQQSLVDLIWQIYQTTG 741

Query: 513  GRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA---- 567
                      G++    L          EQ+S+  L + I  +E+     +    A    
Sbjct: 742  YLDYVGGIPGGSQRQANLHALYERAHTYEQSSFKGLYQFIHFIERMQKRDEDLGEAPVEL 801

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              + V +MT+H +KGL+ P+VF++D      S      + I P L          P    
Sbjct: 802  ATDAVNVMTIHGSKGLQFPIVFVIDMNHHFNSRDVAGNLVIEPHLGIGIRYLGDAPMKGD 861

Query: 628  RNNIVSD-------------LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
              ++ ++             +   + ++ + E  RLLYV +TRA  +LI+    N  N K
Sbjct: 862  DQSLTAENIKVTYDLPQRTVVADAITRANRAEEMRLLYVALTRAEQRLILTGSVNEKNSK 921

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
             + +                +      +S +  +WI          ++ + + +T     
Sbjct: 922  NNLKALGKQWSKGLQGFQTVLGPQLRLDSRSMLDWIGLTLVRTPQFDSQVMKMDTDGAPH 981

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                        +         L       +     ++         R   IH++L
Sbjct: 982  QLGLPKADYSMQLWTANGVEKELAKLRTAHRETIVGDAGSQPLTADER-QFIHRVL 1036



 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 55/182 (30%), Gaps = 20/182 (10%)

Query: 773  LLSDNQTFNRGLIIHKLLQVIF----TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
              S       G   H + Q++      +   + +  I     +          +  +  I
Sbjct: 1101 GDSAPAPTEVGTATHLVFQMLDLTTGEVTADQVQQTIDQLVRERLIANRRIAAQIDVAGI 1160

Query: 829  TRLLENPMMTTAMS--CDSYSEVSVSGKINCP---------KKDIIISGRIDQISISQQN 877
                +  +    +        E   S  +               I+I G ID      Q 
Sbjct: 1161 VEFYQTALGQRILQQPAAVVREQPFSMLLEGDQLFKNLDHDDGQILIHGIIDGYLKGNQG 1220

Query: 878  IFIFEYKTHHHVPQE---IEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVF 933
            I +F+YKT + +P +   +  I   +  Q+++Y   L+       +    L  V    ++
Sbjct: 1221 IELFDYKTDYLLPHDDQRLAEIVDRYQGQVNLYAAALRQM-TGLPVSHRYLYLVKTGTLY 1279

Query: 934  II 935
             +
Sbjct: 1280 EL 1281


>gi|240146225|ref|ZP_04744826.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82]
 gi|257201636|gb|EEU99920.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82]
          Length = 755

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 114/613 (18%), Positives = 203/613 (33%), Gaps = 116/613 (18%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           +    S  L +    +  I T+   +        +  ++DE I   +     +   S+  
Sbjct: 119 YDADDSKSLMKDICKRLEIDTKIYKE--KSFLAAISSAKDELITPTELMR--RALTSSDY 174

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           +      +   Y+EA  KN  LDF+DLI+ T +LL+       ++    +  ++I++DE 
Sbjct: 175 AKRKQAEVYREYQEALHKNNALDFDDLIMKTVELLQSDPE---VKNYYQERFHYIMVDEY 231

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+IR L   +          + L  VGD+ QSIY F GA    +L  ++   
Sbjct: 232 QDTNTAQFELIRLLAGKY----------QNLCVVGDDDQSIYKFRGANIYNILNFEKHFP 281

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I+L  ++RST +IL   + V +     +  +                 
Sbjct: 282 --------DAKTIKLEQNYRSTQNILNAANSVIANNVGRKSKT----------------- 316

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW                 +                A  IA  I+  +        
Sbjct: 317 ----LWTANDEGKKIDFEQFNTGY--------------EEADYIARDIAGGVRNG----- 353

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D  VL R    + L             I               +KDL+A  
Sbjct: 354 ----DYHYGDYAVLYRTNAQSRLFEERF----IVSNIPYKIVGGVNFYARKEVKDLLAYL 405

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI-----S 479
           + I +  DDL+   +L  P        + ++         + Y+ +++           S
Sbjct: 406 KTIDNARDDLAVRRILNVPKRGIGATTVNRVSDYAEAYDISFYDALKRADEIPSIGKAAS 465

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536
           K +  +  I       +F S  D    ++      ++  +   +E     + +DE L+  
Sbjct: 466 KVKPFVNLIQVFRSKLEFISISDLLREVIEETGYVKELEAEGTDEAEARIENIDELLSKV 525

Query: 537 LRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           +  E++    +L   + E+         +   + + V +MT+H+AKGLE P V+L     
Sbjct: 526 VSYEESEEHPTLSGFLEEVALVADID--SLEDDSDYVVLMTLHSAKGLEFPKVYLAGMED 583

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                    +         EE  RL YVG+
Sbjct: 584 GLFPS-------------------------------YMSITSDDSSEQLEEERRLAYVGI 612

Query: 656 TRASDQLIICKHS 668
           TRA  +L I    
Sbjct: 613 TRAMKELTITCAK 625


>gi|70726047|ref|YP_252961.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435]
 gi|68446771|dbj|BAE04355.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435]
          Length = 731

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 119/717 (16%), Positives = 227/717 (31%), Gaps = 128/717 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVEQLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKRFEPRMFIGAISNL 147

Query: 111 RDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    + ++      +   + + Y+    +N  LDF+DLI+ T  L ++   +  
Sbjct: 148 KNELKTPEDAINEANDFHSQMVATVYSGYQRQLTRNEALDFDDLIMKTIQLFERIPDA-- 205

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 206 -LEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +                I L  ++RST  ILT  ++V       +   
Sbjct: 255 WRGADIQNILSFEEDYP--------DAKTIFLEQNYRSTKTILTAANEVIKHNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +    ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTGGEKIKYYEAMTERDE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                     D+ +L R    + ++            +      
Sbjct: 332 VVREIMKHRKAGK----------DYSDMAILYRTNAQSRVLEETF----MKSNLPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R + +  D++S   ++  P        + KI         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRVVANSNDEISLQRIINVPKRGIGPSSVEKIQRYANDNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK          + I  LI   +F    +    IL     R        
Sbjct: 438 DALAEVDFIGLSKKVTQECIKFYELIQNLIKEQEFLEVSEIVVEILDKSGYRDMLEREQT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+N+    Q LI+ L           +   + V +MT+H+
Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEAQIESGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VFL+     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFLMGMEESLFPHIR--------------------------------AIKSD 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                EE  R+ YV +TRA + L I   ++     +S        + +   +     
Sbjct: 586 DDHEMEEERRICYVAITRAEEVLYITHATSRMLYGRSQSNMPSRFLREIPEDLLETP 642


>gi|91974519|ref|YP_567178.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91680975|gb|ABE37277.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
          Length = 1115

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 155/966 (16%), Positives = 306/966 (31%), Gaps = 106/966 (10%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            ++  + +E     +              ++L        +   A                
Sbjct: 214  IAAVKRFEDALAAVGFEEEDTGLRCRTLIALVDILNPGKLSAGAPDTAALIAALNFPR-- 271

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKS----------PDLKEKLKKSQDEFIKIRDRFNT 116
                +   T+K T ++     +    +              + L    D      +    
Sbjct: 272  ---HTSCFTEKGTRRQLRNGTKWQDAAAKVGLKKADGKKTSDALVPLYDGCHNALETLLA 328

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                +         + L   + + K+   +LDF+DL+    DLL        +R  + Q 
Sbjct: 329  AIAGELLSRLCAEMQGLLLEWRDYKRDAALLDFDDLLFTARDLLAGHPE---VRRALSQR 385

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-----SPRTLFAVGDEKQSIYSFHG 231
              ++L+DE QDT  +Q E++  +  +   G +         P  LF VGD KQ+IY F G
Sbjct: 386  YRYVLVDEFQDTDPLQTEILWMICGEDCEGADGAPLKRPLRPGALFMVGDPKQAIYRFRG 445

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A+    L  +    + A         + +  +FRS   IL  V+K F             
Sbjct: 446  ADVNAYLAARSAVPQDA--------RLAITANFRSVEPILAFVNKRFERV---------- 487

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   S   GQ G  +L        D+         T    +    +     A  +A 
Sbjct: 488  ------LSEEAGQPGFAELSPVRPPNGDAPAVVAL-DVTLPQGASGVSAIRDAEAAALAE 540

Query: 352  TISNMIG--TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                ++G          + R  +  DI +L     +      +      D  I V     
Sbjct: 541  LCCRLVGNLQVHDPETKELRPCRLGDIALLAPAGTELWRFEEVLE----DRGIPVATQAG 596

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT------QRHET 463
                    I DL+AL R +    D L+   +L+ PL   +E+++  I         R   
Sbjct: 597  KGFFRRQEIHDLIALVRTLADPRDTLALGALLRGPLIGLTENELLDIMEGLPVDPDRPAR 656

Query: 464  ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG- 522
                       +   +  +  I+ +  L    +  +P+      +     R     RF  
Sbjct: 657  LPTLTVGTNPEHIAHAVARKAIENLQALRRRIRITTPYALLADAMSDFHVRPHLRQRFRT 716

Query: 523  --NEVIDVLDEFLNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                 +  +D FL F    +     +   ++ ++ E      +    A    V ++TVH 
Sbjct: 717  GAERAVANVDLFLEFARAYDVRGLRAFSRDMTAKWEDDEDQAEGRPDAEEESVSLITVHA 776

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            AKGLE PVV  ++   + F+   +        + D P     IP   +  +  + +    
Sbjct: 777  AKGLEWPVVIPINMTGKPFAGGVL--------MQDRPNSRFSIPVLGTEPSDYAAMKTMN 828

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                  E  RL YVG+TR+ D L++                  ++  + +     +    
Sbjct: 829  ALERDRERVRLWYVGVTRSRDLLVL--------------PRHTELPKECWATLVDLDVGA 874

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            L     +    A   +     N         +         K ++        +     P
Sbjct: 875  LPAVDPESFGPAGTRAARIEANEQTREIFAAEAGRIFAAREKIVWRQPSRSEVDGEGEKP 934

Query: 760  STIDTKGKTNLESLLSDN---QTFNRGLIIHKLLQVIFTLPEHKRKNFIT---SYCTKNA 813
                   +    + +       +  RG+I+HKL++ I      +  + I    +   ++ 
Sbjct: 935  DIRIDHSEPPGPAEVEKPVVVGSAQRGVILHKLMEEIINGEVGEHMSEIESRAALLKQHL 994

Query: 814  KLWP--AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
             + P    +   L  ++ + L  P +         +E+ V G +    ++++ISG++D +
Sbjct: 995  GIEPTAEPQPVELAATVLKTLALPAIKAL-RPRMVAELPVFGSVAGADEEVLISGQVDVV 1053

Query: 872  SISQ-QNI-FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
            ++     I  + ++K+              +  Q+  Y          K    LL++++ 
Sbjct: 1054 ALDDAGEIDVVVDWKSDVDPS---AAAVDHYRQQIGDYR----RLTGAK--KALLVFMTA 1104

Query: 930  PKVFII 935
             +V  I
Sbjct: 1105 GQVVEI 1110


>gi|302670100|ref|YP_003830060.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus
            B316]
 gi|302394573|gb|ADL33478.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus
            B316]
          Length = 1317

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 150/1102 (13%), Positives = 316/1102 (28%), Gaps = 245/1102 (22%)

Query: 43   NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT-------PQKNIITQEINKKSPD 95
               +     ++  A +    ++ F  L      +  +       P K    +    K  D
Sbjct: 248  GDNLDADKNSILAALKQDTYDQLFDGLRGISFGRISSKKDPTVNPDKREYVKNERGKIKD 307

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
              + L ++                 ++      L       ++  K++  ++DF D+   
Sbjct: 308  RVKDLVETYFALPAETVVEQMALCDRAVRELCRLTIRYKQLFDAKKREKQLIDFPDMEHF 367

Query: 156  TNDLLKKRDVSAW-----------------IRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
               +L                         +  +       +LIDE QD++ +Q  ++RS
Sbjct: 368  ALQILVDHPDEEEAKGKTCAEIIEMCTPSAVALEYRDYYREVLIDEYQDSNNVQELMLRS 427

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            ++ D              F VGD KQSIY F  A P+  + +     K           I
Sbjct: 428  ISGDMPDKSER-------FMVGDVKQSIYKFRLARPEIFMEKLHSYDKNEKALD---RRI 477

Query: 259  ELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            +L  +FRS  ++L   + +F     A    +  D    +   +    +       E ++ 
Sbjct: 478  DLHKNFRSRKEVLEATNYIFEKIMGADLGSVDYDEDAKLVTGADYYEEPTYNVTPELILF 537

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              DS             ++L         A  IA  I  ++  D        + ++ KD+
Sbjct: 538  DKDSDN-----------EALSDFDPKEKEALVIAERIHKLMDED--------KNLRFKDM 578

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            ++L+R          + + +  +  I      +    +   +  ++ L   + +   D+ 
Sbjct: 579  VILLRSLSG---WDDVFKKVLEEQGIPTYIESKSGYFEAYEVAVILYLLTIVDNPSQDIP 635

Query: 437  FVCMLKSPLFNFSEDDIFKIC--------------------------------------- 457
             V ++ SP+  F+++++ ++                                        
Sbjct: 636  LVSVMHSPIGGFTDEELARLRVMVKEDDKASIEDSLYYGLKALTRESDEATSTGRDVLMN 695

Query: 458  -------------TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                             +   + E      N  + K    I ++ EL  I+ +   H+  
Sbjct: 696  EASAGKVGLMDEVASTGKAGAMNEVASAGRNALMDKLVKFIDFVEELRTISIYTPVHELL 755

Query: 505  TLILGAKKGRQQ-FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----P 558
              I+      +       GN+    LD  +   L  E+ S+  L   +  +E        
Sbjct: 756  QHIMDETGFDKYCLAMPAGNQRKANLDLLMARALSFEKTSFKGLFHFVRYIEHMKLVEVD 815

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                     N + VRIM++H +KGLE PVVF+      V   +    + +   L      
Sbjct: 816  YGEAGIIDENADVVRIMSIHKSKGLEFPVVFVSGLAKGVNLRETKGDLIVDMDLGIGVKS 875

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR--------------------- 657
                 + K        +   +K  +  E  R+LYV +TR                     
Sbjct: 876  INSEIRVKYDTLKRIIIADKMKTDSLGEELRVLYVALTRAKEKLIMTGALKKPLDAITKE 935

Query: 658  ASDQLIICKHSNT-SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            A    +I           + +  ++ D++  S  +     K      +  + +  Y+ S 
Sbjct: 936  ARRLPVIAGKEKLLPYSLRESAGSYLDLILPSVVSHPGFSKGLAALGVPDEMYRGYQESE 995

Query: 717  HHPENTP--------------------LEREETIKQLMDEQKIPKKLFSPIKNDINEP-- 754
                +                      + R++ +   +      +      K +   P  
Sbjct: 996  SQVPDFSFVFLSDDEIAADMLKGDVMGISRQQELSDAVKAYSGEEAERLREKFEAKYPFE 1055

Query: 755  -----------------------YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
                                    +   S    + + +    +       RG   H++++
Sbjct: 1056 YLKGLFTKTTVTELKKHMLEEMGEVFTHSADYAEERNDDIEHIKKLTGAERGTAYHRIME 1115

Query: 792  VIFT-------LPEHKRKNFITSYCTKNAKLWPA-----KEYKNLLLS------------ 827
            ++         L +  R  +      + +    +     +E +N+               
Sbjct: 1116 ILDKDIYGNEKLMQEARDIYGNDELEQESGDIRSNEELMQEAENIKTEHRKIDPVSKRIY 1175

Query: 828  ------------------------ITRLLENPMMTTA---MSCDSY-SEVSVSGKINCPK 859
                                    IT  L   +               E      I   +
Sbjct: 1176 GWMKGMISKGMITEEYLPSIWCPDITTFLSTDLGQRMGMAFRRGELVREKPFMMGIPASE 1235

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
                    + ++I G ID   I    I + +YKT     QE + +   +  QL +Y++ L
Sbjct: 1236 LDDKYPESETVLIQGIIDAWFIEDGQIVLLDYKTDRV--QEEQELVDRYSIQLDLYKRAL 1293

Query: 912  KDSYPNKSLVCLLIYVSEPKVF 933
            + +   K     +   +  KV 
Sbjct: 1294 ESATNMKVKEVFIYAFALGKVI 1315


>gi|67458566|ref|YP_246190.1| ATP-dependent helicase [Rickettsia felis URRWXCal2]
 gi|67004099|gb|AAY61025.1| ATP-dependent helicase [Rickettsia felis URRWXCal2]
          Length = 815

 Score =  317 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 171/620 (27%), Positives = 290/620 (46%), Gaps = 42/620 (6%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              F T+    +K+ +++E+ +K   L  +L+K   E  ++ +     ++   T     L
Sbjct: 237 KEIFFTKDGKKRKSFLSKELIRKYLKLLLELEKITSEIYRLDELRRIEELEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL  +    W+ +K++ EINHIL+DE QDTS
Sbjct: 297 AHIILKKYDFYKEENNLLDYDDLIYYTEKLLNNKTTHEWLLHKLESEINHILVDEAQDTS 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW +I +L  +F      +    + F VGD+KQSI+SF GA+           +   T
Sbjct: 357 PQQWNIITTLITEFNA---ANKPNNSTFIVGDDKQSIFSFQGADLHNFSLVNEQLKTNLT 413

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           NA +KF  I L  S+RS A+IL     V    ++       S   +   SS     G + 
Sbjct: 414 NANKKFKNITLEYSYRSCAEILQFTHNVLKNIKSNYPSLFLSDNPL--ISSFRTHQGFIT 471

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W  V S+       ++  W    D    +S+A +L  +I   I   I +  I  +   R
Sbjct: 472 VWPLVTSEKQ-----EELFWALPEDYENSKSAADLLIEKIVNFIQEQIESKEILPSTASR 526

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KD ++LVRKR +    +       +  K+ V  +DR  L ++L I DL+++ +F+L
Sbjct: 527 -ISEKDFMILVRKRDE---FSNNLIKELSKAKLKVEISDRINLKENLTIMDLISVAKFVL 582

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +DDL+   +LKSP+   +E  ++++         +           +S  + +   ++
Sbjct: 583 LSDDDLNLAGLLKSPIIGMNEKQLYEL---------LVNKTDNSLWDNLSACEEIYAKLN 633

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            LI I +  +  +FF L++     R+ +         D+++E L  +     +  +SLQ 
Sbjct: 634 SLIVIYKISTVENFFDLVVNNLNLREIY-------DDDMINELLTLSKNYTNDIDNSLQG 686

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            I+  E     IKR    + +++R+MTVH +KGLE+P+V L D             +   
Sbjct: 687 FIAWFENNDIYIKRDM-EHSDKIRVMTVHGSKGLEAPIVILCD--------STTLPVSSN 737

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             + DD G   +          + +L +  K    +EY RLLYV MTRA D+LIIC    
Sbjct: 738 KFIWDDKGEMFFSANIVDTPEFLQELKEAEKLKDLQEYIRLLYVAMTRAKDRLIICGF-- 795

Query: 670 TSNEKKSNQRTWYDMVYDSF 689
            SN+  + +  WY++V  +F
Sbjct: 796 -SNKAAAPENCWYEIVKQTF 814


>gi|15613211|ref|NP_241514.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
 gi|10173262|dbj|BAB04367.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 747

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 115/631 (18%), Positives = 211/631 (33%), Gaps = 122/631 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y++  KKN  LDF+DLI+ T  L KK      +     ++  +IL+DE QDT+
Sbjct: 181 AAEVYVEYQKQLKKNQALDFDDLIMKTTSLFKK---VPEVLEYYQRKFQYILVDEYQDTN 237

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +++ L              + +  VGD  QSIY + GA+   +L  +   Q    
Sbjct: 238 RAQYMLVKML----------GDRHKNVCVVGDSDQSIYKWRGADIANILSFEEDYQ---- 283

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L  ++RST  IL   ++V       +  +                     
Sbjct: 284 ----DAEVILLEQNYRSTKTILEAANRVIENNVKRKPKN--------------------- 318

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW              +  +        +       A+ +   I   I            
Sbjct: 319 LW-------TENEQGAKIGFYKADTEQGE-------AQFVVEKIREAIQDG--------- 355

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               KDI +L R    + ++  +         I           D   IKD++A  R + 
Sbjct: 356 -ASYKDIAILYRTNAQSRVMEEML----IKSNIDYNIVGGTKFYDRKEIKDVLAYLRLVA 410

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQH 483
           + +DD+S   ++  P        + KI      +  +++  +++          +SK   
Sbjct: 411 NPDDDISLQRIINVPKRGIGATTVDKIAAYAERQGISMFAALKEIEQIGVTSRAVSKLVE 470

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
             + +   + + ++ S  +    +L     R    +    E     + +DEFL+ T   E
Sbjct: 471 FTEQLGHWVQMQEYLSVTELVEELLERTGYRDMLQNEKTLEAQSRLENIDEFLSVTQEFE 530

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGS 595
           + +   SL   +++L       K     +     + V +MT+H+AKGLE P+VFL+    
Sbjct: 531 KSSDDKSLIAFLTDLALISDIDKLDDEDDGAKPTDAVVLMTLHSAKGLEFPIVFLIGLEE 590

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F H                                                 L YVG+
Sbjct: 591 GIFPHSRSLFEDDEMEEERR----------------------------------LAYVGI 616

Query: 656 TRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN-SINKDEWIA 711
           TRA  QL +              +    + D + +         + +L     ++    A
Sbjct: 617 TRAEKQLYLTSAQLRTIYGRTNANPPSRFIDEIPEDCLEFLNEPQEELPWMKTSRPVTKA 676

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            + S   P+ T    E+    + D+ +  K 
Sbjct: 677 KQPSRSVPQMTTTGGEQFAWTVGDKAEHKKW 707


>gi|313115007|ref|ZP_07800500.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf.
            prausnitzii KLE1255]
 gi|310622698|gb|EFQ06160.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf.
            prausnitzii KLE1255]
          Length = 1240

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 148/1039 (14%), Positives = 295/1039 (28%), Gaps = 145/1039 (13%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L         ++     K +  +       +++  S +   G    L  A          
Sbjct: 241  LAQAQAEEKGKTAASKAKAVAGVNDKFAEPLSRLESAAALLGEVERLAAAGQWTPLYDKL 300

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK-- 118
                   +                    +  ++ +  +  +   +      +     +  
Sbjct: 301  TPY-VLGMEEIPGFKGMKKRLTGDHKAAVRTRADEAAKLFEHITELVSCSEEEAEADRRA 359

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEI 177
                  A     +  +A +   KK+  +L+F D       LL+  D V   +   I Q  
Sbjct: 360  ALPRLRALFVAVRDFDARFSAKKKERKLLEFSDFEHQALRLLRTPDGVCTPLCQSIRQSY 419

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              +++DE QDT+ +Q  + R L            +   LF VGD KQSIY F  A+P   
Sbjct: 420  AAVMVDEYQDTNALQDAIYRCLAS---------PAGDDLFLVGDLKQSIYRFRQADPSIF 470

Query: 238  LREKRIN---------QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +              + A       +++ L  +FRS   ++  ++ +F      Q   
Sbjct: 471  RAKLNAWAPLPSGTARPRPAEGTPGTDALLALDANFRSAPQVVAGINFIFEQLMTPQLGD 530

Query: 289  EDSTTTIRHRSSRIGQ-VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                   R      G+  G+V+         ++                         A 
Sbjct: 531  TAYGDGQRLVCGAPGEYAGSVEAHFLPDDTAETD------------------------AA 566

Query: 348  RIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             IA  +  ++       +G   R +Q +D  +L+  R D                I V  
Sbjct: 567  WIAQRVEELVKNGEPVRDGSSTRPVQYEDCCILLAARGDFLAYEEALTA----RGIPVYA 622

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------- 459
            + R  L +   I+ L++L + I +   D+     +  P+F F++DD+ ++  Q       
Sbjct: 623  DARENLMEAAHIRPLISLLKVIDNPAQDIYLAAAMLGPMFGFTDDDLVRLRAQSAAMQKK 682

Query: 460  ------------RHETETVYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHD 502
                        R    ++Y  + +    G       K +     +  L  +A+      
Sbjct: 683  AQEEQGAKKTGKRASRMSLYGAVLQVVQNGDETPFTRKVKDFYDRLTALRRMARSAPAEQ 742

Query: 503  FFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-- 559
                I  +        +   G    +    F  F  +   N  S+L   I    Q     
Sbjct: 743  LLEEIFVSTGYLAALGVLENGAHRREDARRFAAFCAQTGANGISALVRAIDAAAQAGSTG 802

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                   A    V IMT+H +KGL+ PVVF+ DT          + + +         + 
Sbjct: 803  QDTVPGGARPGCVTIMTIHRSKGLQFPVVFVGDTARHFNLSDTYQPVLLHREYGAGLRLR 862

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-- 677
                +S  +    + L     + T+ E  RLLYV +TRA D+LI+      +        
Sbjct: 863  PEQGESMYKTAAYAALASVHAQETRSEQMRLLYVALTRAQDKLILTVPLGMTKTGNPFAK 922

Query: 678  ----------------QRTWYDMVYDSFHNDERVKKIK-----------LTNSINKDEWI 710
                              ++ D +  +         ++            T S       
Sbjct: 923  AAAFLAAGAGETLNQQAGSFADWLRAALLVHPFGGPLRRLAGDLELPFVFTESEIMVTVQ 982

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-------TID 763
              +     PE  P   E          ++ +                  S          
Sbjct: 983  EAQPEPETPEQEPEAAEPVPADPALVAQLQEGFAWRYPAAKLAAVPAKVSVTSIVHKAEQ 1042

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH--------KRKNFITSYCTKNAKL 815
            T  +               G  +H  L+                +           + +L
Sbjct: 1043 TTLERPAFLSKDGLTAAEMGTALHAFLEHADFASLAAAKAAGTLEEAILAERQRQVDTRL 1102

Query: 816  WPAKEYKNL-LLSITRLLENPMMTTA-MSCDSYSEVSVSGKIN----------------- 856
               +  + L    I R  E+        +     E++    +                  
Sbjct: 1103 VAPEIAEKLNAGRIRRFAESEAFAKICAAEKVLRELAFITALPASAVLTAQGASAQEAAA 1162

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
               + +++ G  D + +   ++ + +YKT     +        +  QL++Y   +   + 
Sbjct: 1163 VQDEQVLVQGIADLVLVFPDHLELLDYKTDRR--KTEADFLSAYRPQLNLYALAIDKRFA 1220

Query: 917  NKSLV-CLLIYVSEPKVFI 934
             K +    +  +   ++  
Sbjct: 1221 PKKVTYKGIYSLELGRLIE 1239


>gi|295702475|ref|YP_003595550.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319]
 gi|294800134|gb|ADF37200.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319]
          Length = 749

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 129/756 (17%), Positives = 242/756 (32%), Gaps = 139/756 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +            
Sbjct: 40  GAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKAAREMRERVSNIVGGVAEDIWIST 99

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKK------------SQDEFIKI 110
           F  +    L +        +N    +   +   +K  LK                     
Sbjct: 100 FHSMCVRILRRDIDRIGFNRNFTILDSTDQLSVIKNILKDQNIDPKKFDPRSLLGSISSA 159

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++     + F  T A     +   +   YE+  KKN  LDF+DLI+ T  L K+      
Sbjct: 160 KNELKVAEEFDKTAAGPYEEVVSKVYKEYEKRLKKNQALDFDDLIMTTIQLFKR---VPE 216

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ ++R L   F            +  VGD  QSIY 
Sbjct: 217 VLTYYQRKFQYIHVDEYQDTNHAQYMLVRLLAARFE----------NVCVVGDSDQSIYR 266

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++   K           I L  ++RST  IL   + V +   N +  +
Sbjct: 267 WRGADITNILSFEKDYPK--------AKTILLEQNYRSTKTILAAANGVIANNMNRKVKN 318

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       ++    +   + +  +           A+ 
Sbjct: 319 ---------------------LW------TENDEGQKIYHYQAMSEHDE--------AQF 343

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I   + +            +  D  +L R    + ++  +         I+     
Sbjct: 344 VARKIKEAVDSGKR---------KYSDFAILYRTNAQSRVMEEVL----LKSNINYTIVG 390

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKDL+A  R I +Q+DD+S   ++  P        + K+         +++
Sbjct: 391 GIKFYDRKEIKDLLAYLRLIANQDDDISLARIVNVPKRGVGATSVDKVANYGNVHDISIF 450

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +              +     I  L  +  + S  +    +L     R+       
Sbjct: 451 KALDEVELMGLTGKATKALRDFQSMISNLAQMQDYMSVTELVEQVLERTGYREALKVEKT 510

Query: 523 NEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAH--SANHNEVRIMT 576
            E     + +DEFL+ T   E+ +   SL   +++L       K        + +V +MT
Sbjct: 511 IEAQSRLENIDEFLSVTKTFEEASEDKSLVAFLTDLALVADIDKLDDEEEEENEQVILMT 570

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE PVVFL+     VF H                                    
Sbjct: 571 LHSAKGLEFPVVFLMGMEEGVFPHSRSL-------------------------------- 598

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              + +  EE  RL YVG+TRA  +L +      +   K+N       +         + 
Sbjct: 599 --FEDNEMEEERRLAYVGITRAEQELYLLNAQMRTLFGKTNVNPKSRFI-------GEIP 649

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
              + +        A   S          R+  + +
Sbjct: 650 SELVESLNEAMRKPAAGRSGASASPFAARRQAAVAK 685


>gi|196250519|ref|ZP_03149210.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16]
 gi|196210009|gb|EDY04777.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16]
          Length = 724

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 123/695 (17%), Positives = 225/695 (32%), Gaps = 137/695 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++ Q L   +        
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQALLGGAAEDVWIST 91

Query: 66  FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106
           F  +    L                  T + +  K I+  + I+ K  + +  L      
Sbjct: 92  FHSMCVRILRRDIDRIGINRNFSILDPTDQLSVIKAILKEKNIDPKKFEPRTILGTISGA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +       K  +++     +   +   Y++   +N  LDF+DLI+ T  L  +    
Sbjct: 152 KNDLLTPEQFAK--RASTYYEKIVSDVYQEYQQRLLRNHSLDFDDLIMTTLQLFDR---V 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +      +  +I IDE QDT+  Q+ +++ L E F          + + AVGD  QSI
Sbjct: 207 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +R              +I L  ++RST  IL   ++V     N + 
Sbjct: 257 YRWRGADIQNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW             +  ++    +   +       A
Sbjct: 309 KR---------------------LW-------TENPEGKPITYYEAMNEADE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +A  I   I +            +  D  VL R    + +I  +         I    
Sbjct: 334 QFVAGRIQEAIESGAR---------RYSDFAVLYRTNAQSRVIEEML----LKANIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I + +DDLS + ++  P        I K+         +
Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 440

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++E + +                    + +   + ++ S  +    +L     R    + 
Sbjct: 441 LFEALGELEMIGLSAKATGALAAFRGQLEQWTQLQEYVSVTELVEEVLDKSGYRDMLKAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573
              E     + LDEFL+ T   E  +   SL   +++L              +   + V 
Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENASDDKSLIAFLTDLALISDLDELNGNDQTEEGDAVV 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFL+     +F H                                 
Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLDDEDEMEEE-------------------- 600

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                          RL YVG+TRA ++L++    
Sbjct: 601 --------------RRLAYVGITRAEEELVLTSAQ 621


>gi|284124401|ref|ZP_06386963.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3]
 gi|283829217|gb|EFC33632.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3]
          Length = 1180

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 159/845 (18%), Positives = 294/845 (34%), Gaps = 101/845 (11%)

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             LTL   + + Y+EAK     LDF DL + T DLL+  +    IR ++     + ++DE 
Sbjct: 344  LLTLYTRVLSDYDEAKLSQGTLDFNDLQLKTRDLLRDNE---KIRKELVDRHQYYMVDEY 400

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT+ +Q+E++  LT +             LF VGD KQSIY F  A+ +   + K+   
Sbjct: 401  QDTNELQYELVMLLTNELKSA--------NLFIVGDPKQSIYGFRDADVRVFNKTKQKIV 452

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ- 304
            +      +    I L  +FRS  D++  V+  FS        +E          +R  + 
Sbjct: 453  R------EDGKRISLTENFRSLRDVIGFVNYFFSHLMGPGNENEFEVEYEALTQARHAKT 506

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI---SNMIGTDT 361
             G +++                       D  P  +   ++A+RI   I   +  I    
Sbjct: 507  NGAIEIL-------------------IGQDGDPSANEYKLIAQRIENMITDAAETIRVRD 547

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                  +R IQ  DI +L+R R   P I         +  I  +            I D+
Sbjct: 548  KDGKLSERPIQYDDIAILIRARTHLPDIEHAL----LEAGIPYLTTGGIGFYQRQEIYDI 603

Query: 422  MALGRFILSQED-DLSFVCMLKSPLFNFSEDDIFKICTQRH---ETETVYEYIQKFANCG 477
                 F+ +  D ++S   +L+SP F  S+ ++++I  Q+    E ++ ++    +    
Sbjct: 604  WNYLNFLNNPSDSNISLAAILRSPAFGISDAELYEISLQKETKQEKKSFWDKTLDY-QGC 662

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFT 536
              + +  I  +   I  A+    +     I+            + G +      + L+  
Sbjct: 663  TEQLRCAIDTLKTHIEFARRMPVNRLVGTIVNETGLIGTLRTGKQGKQRWANYQKLLDLA 722

Query: 537  LRNEQNSYSS-LQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLV 591
               + +     L + I  L+       R       A+   V+IMTVH AKG + PVV L 
Sbjct: 723  RNFDGDENRQILPDFIDFLDILITEEPREGQAPIKASSGAVQIMTVHAAKGKQFPVVMLP 782

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNR 649
                +        +   + +       P+        +   IV+ +     +    E  R
Sbjct: 783  RLDKK----GQTDQEPFIDAEFGIGFSPLHPANDYQKTEPAIVNFMKSRANEKNVAEKKR 838

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE---------------R 694
            L YVG TRA D+LI+      +++ +      Y  +     ++                 
Sbjct: 839  LFYVGATRAEDRLILSGTLRDNSKPQQMLEWLYTHLEIGEADNLLNLDVKQDVYKNGSTI 898

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP-IKNDINE 753
             +  +L   I++      +      E  P+E  E +   +   ++P  L +P + N    
Sbjct: 899  DQHFRLQIPISRTLTDTTDTDAASDETMPIEFPEDLPSALQPTEVPTALSAPELANYARC 958

Query: 754  PYILNPSTI----DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
            P       +      K                       L+Q+            I    
Sbjct: 959  PLRYQLENVLRIPSIKQAEPDSDENEMKNAILY-----VLMQIREPSDTQNLDTRIQQAF 1013

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID 869
                ++  A+    L   I   L++ +  TA+     SE   +  I       I+ GRID
Sbjct: 1014 ENFPEIADAE--TELRKHINSFLDSELGQTALRA---SETETNQHIYADVDGHILDGRID 1068

Query: 870  QISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS-LVCLLIY 926
            ++   +   +  I  Y T           P     ++ +Y  ++   YP +  +   + +
Sbjct: 1069 RLFRDETGHWQAII-YGTG------DAQHPTVCSPEMELYSLLIHRCYPEQPTVKINIFF 1121

Query: 927  VSEPK 931
              + +
Sbjct: 1122 TEQGQ 1126


>gi|157803400|ref|YP_001491949.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel]
 gi|157784663|gb|ABV73164.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel]
          Length = 872

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 168/655 (25%), Positives = 296/655 (45%), Gaps = 76/655 (11%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
             FF T+    +K+++++E+ +K P L  +L+K   E   + +     ++   T     L
Sbjct: 237 KEFFFTKDGKKRKSLLSKELIRKYPKLLLELEKITSEIYHLDELRRIEELEYHTNLLTKL 296

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+  K++N +LD++DLI  T  LL  +    W+ +K++ +INHIL+DE QDT+
Sbjct: 297 AYIILKKYDSYKEENNLLDYDDLIYYTEKLLNNKATHEWLLHKLESKINHILVDEAQDTT 356

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW +I +L  +F           ++F VGD+KQSI+SF GA+ +         +   T
Sbjct: 357 PTQWNIITTLITEFNA---MDKPNNSIFIVGDDKQSIFSFQGADLRNFSLVNEQLKANLT 413

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
            A +KF  I L  S+RS  +IL     V    ++               SS     GTV 
Sbjct: 414 KANKKFKNITLEYSYRSCTEILQFTHYVLQNIKS--DYPNLFFPDNPLISSFRTHQGTVT 471

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---- 365
           +W  V S+       ++  W    D    +S+A +L  +I   I   I +  I  +    
Sbjct: 472 VWPLVTSKKQ-----EELFWALPEDYKNSKSAADLLIEQIVNFIKEKIESKEILPSICAM 526

Query: 366 -----------------------------------------GKKRVIQAKDILVLVRKRK 384
                                                         I  KD ++LVRKR 
Sbjct: 527 KSGYTKINLENSKEFVNQGAECILNVQCPSHSDYKNDSANFSNSSRISEKDFMILVRKRD 586

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
           +    +       +  K+ +  +DR  L DHL+I DLM++ +F+L  +DDL+  C+LKSP
Sbjct: 587 E---FSNNLIKELSKAKLKIEISDRINLKDHLSIMDLMSVAKFVLLPDDDLNLACLLKSP 643

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
           +   +E  ++++     + +++++         +S +  + + ++  I I +  +  +FF
Sbjct: 644 IIGINEQQLYELLI-NKKDQSLWD--------TLSLYLDIYEKLNSFIEIYKTSTAENFF 694

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           T+++ +   R+      G++  D+++E L  +     +  +SLQ  ++  E     IKR 
Sbjct: 695 TIVVNSLNLRELLNVHNGDDSDDMINELLTLSSNYANDIDNSLQGFVAWFENNNIYIKRN 754

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              + +++R+MTVH +KGLE+P+V L D+ S   S            + +D G   +   
Sbjct: 755 M-EHSDKIRVMTVHGSKGLEAPIVILCDSTSLPVSSNKF--------IWNDNGEMFFSAN 805

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
           +      + +L +  K    +EY RLLYV MTRA D LIIC  SN +   +++  
Sbjct: 806 AADTPQFLQELKEAEKLKDLQEYIRLLYVAMTRAKDHLIICGFSNKATTSENSWY 860


>gi|160914774|ref|ZP_02076988.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991]
 gi|158433314|gb|EDP11603.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991]
          Length = 1080

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 148/873 (16%), Positives = 295/873 (33%), Gaps = 110/873 (12%)

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
                +    T+ + K+S +L++ L         +       K+       + + +     
Sbjct: 303  SPDKEDKEYTR-LRKESQELEDSLLAILYREDTLIRDM--TKLAPYVQKLVCMCQDYRQS 359

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            Y   K K+ ++DF+D+      +L+    S  I     ++   I++DE QD++ +Q  ++
Sbjct: 360  YAALKAKHEMIDFDDMEHFALAILQANQGS--IAKLYREQFVEIMVDEFQDSNDVQNSLV 417

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            + +  +             +F VGD KQSIYSF  A+P  +              G+   
Sbjct: 418  QLICRE-----------NNVFRVGDIKQSIYSFRHAKPDLMKSL-------IEQKGENDE 459

Query: 257  IIELPLSFRSTADILTVVDKVFS--IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
            +I L  ++RS   I+   +++F   +  +    S      +        +   V +    
Sbjct: 460  VIYLSNNYRSKKMIVDFNNELFKILMNMDRFSCSYRKEDDVD-TGVPAQEENNVPICFHA 518

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
            +   + +   Q     +              A  IA  I ++   +           Q K
Sbjct: 519  IFHDEIKEAQQLIVAKNTLK-----------ANYIANQIIHIKDKEKR---------QWK 558

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            D +VLVR            +   ++  I    + ++      +++ +++  + + +  DD
Sbjct: 559  DFVVLVRSNARK----DNLKAAFDELNIPYFIDIKYGFYQSSSVQVILSTLKALCNPHDD 614

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
            +SFV  + SPL+N+S   + +I  ++ + E+ Y Y+ K            +     L   
Sbjct: 615  ISFVACMMSPLWNYSAQAMAEIKLKKDKQESYYRYMSKHTPDE-------LADFEALRQK 667

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                  H+    +        +       +    LD      ++ E     SL+  ++++
Sbjct: 668  RYTYKLHEIINQLFLFHDYYAK---HTSIQEKTNLDLLFEKAIQFEAKEAGSLESFLAQI 724

Query: 555  EQYPPTIKRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            +Q             +  + VR+M++H +KGL+ PVVFL     +    +      +   
Sbjct: 725  DQIQDAQTAEAIPVGSEADVVRVMSIHQSKGLQFPVVFLWS-SDKQTPIEFKDFCILDAE 783

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            L           +          +     K   EE  R+LYV  TRA  Q+ I       
Sbjct: 784  LGIGMKAMELPKRYVRTTLPRIAMEHKKDKEELEEEMRILYVATTRAQQQMHIV------ 837

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW-STHHPENTPLEREETI 730
                       D +         +    +        WI   + S   P  T  E     
Sbjct: 838  -----------DCILSLEPYRHPLTTSDIYKRKGYTAWILQAFLSMQSPLFTLKEVHHLW 886

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
            +  +  ++       PI       + L+ ++      T        N     G  +HKL+
Sbjct: 887  ENQVQTKQATTYKKLPIYTKEASSWRLSTASEQNINTTEPFQWKQKNDGTIYGSAMHKLV 946

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT--------TAMS 842
            ++                     K    KEYK L  +I   L +  +             
Sbjct: 947  EL------------------SQGKSLTPKEYKALAETINFTLHDSDIKKLNALQSNPIYQ 988

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
                   S     N    D I+ G +D +SI +Q+I + ++KT   +  + + +   +  
Sbjct: 989  NALQVWHSYEMPFNVAIHDEILHGYMDFVSIGEQDIILIDFKTDATL--DAQELTKHYRE 1046

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            QL  Y++ L+  YP   +   L   +  ++  I
Sbjct: 1047 QLHTYQRALQALYPQHQIHAYLYSFALNQMLPI 1079


>gi|226310272|ref|YP_002770166.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226093220|dbj|BAH41662.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
          Length = 782

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 116/675 (17%), Positives = 213/675 (31%), Gaps = 122/675 (18%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +         ++     + +          +A  +   Y++  + N  LDF+DLI+ T  
Sbjct: 142 RSILAAISGAKNELTDPETYTRLAGDPFAQVAAKVYTAYQKKLRNNQSLDFDDLIMTTVR 201

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           L K+      +     ++  +I +DE QDT+  Q+ +I  L +            R +  
Sbjct: 202 LFKE---VPEVLEFYQKKFRYIHVDEYQDTNRAQYLLISMLAD----------KHRNVCC 248

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  QSIY + GA+   +L  ++           +  +I+L  ++RST  IL   ++V 
Sbjct: 249 VGDADQSIYKWRGADISIILNFEKDYP--------EAKLIKLEQNYRSTKTILQAANQVI 300

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +  +  +                        LW +        C               Q
Sbjct: 301 ANNKLRKEKK---------------------LWTENPGGDKIMCF--------------Q 325

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             S    A  I  TI   +                    +L R    + ++  +      
Sbjct: 326 GDSEHDEAYFIVDTIRKQMAQYK----------SYDKFAILYRTNAQSRVVEEVF----I 371

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457
              +           D   IKD++A  R I + +DD+S   ++  P  N  +  + K+  
Sbjct: 372 KSNMPYTIVGGTKFYDRKEIKDILAYLRLISNPDDDISLQRIINVPKRNIGDTTVDKLQA 431

Query: 458 TQRHETETVYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                 +++++ IQ+ A  G+              I  L+ +  + S  +    +L    
Sbjct: 432 YANANGQSLFQAIQETAYMGLPSRTTNAILSFNDLISNLMQMTDYLSVTELVEEVLKRSG 491

Query: 513 GRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYP------PTIK 562
            R         E     + ++EFL+ T   E+ N   SL   +++L              
Sbjct: 492 YRDSLKEEKTLEAQARLENIEEFLSVTQEFERKNEDKSLLAFLTDLALVADIDSLGDDGA 551

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +   +   +V +MT+H+AKGLE PVVFLV     VF H                      
Sbjct: 552 QEEVSAEGQVVLMTLHSAKGLEFPVVFLVGCEEGVFPHSRSL------------------ 593

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                              +  EE  RL YVG+TRA ++L +      +   ++N     
Sbjct: 594 ----------------FDDAEMEEERRLAYVGITRAEERLYMTCARMRTLFGRTNVNAPS 637

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             + +                 +     +                        +     K
Sbjct: 638 RFLQEIPAELLEGNPATADRGFSGGGRSSAFGQRDGSAFGRDTGARPFGAPSSQAGSAPK 697

Query: 743 LFSPIKNDINEPYIL 757
             S  +   + P   
Sbjct: 698 FGSAQRTPSSTPATF 712


>gi|291537470|emb|CBL10582.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis M50/1]
          Length = 747

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 114/613 (18%), Positives = 203/613 (33%), Gaps = 116/613 (18%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           +    S  L +    +  I T+   +        +  ++DE I   +     +   S+  
Sbjct: 111 YDADDSKSLMKDICKRLEIDTKIYKE--KSFLAAISSAKDELITPTELMQ--RALTSSDY 166

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           +      +   Y+EA  KN  LDF+DLI+ T +LL+       ++    +  ++I++DE 
Sbjct: 167 AKRKQAEVYREYQEALHKNNALDFDDLIMKTVELLQSD---TEVKNYYQERFHYIMVDEY 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+IR L   +          + L  VGD+ QSIY F GA    +L  ++   
Sbjct: 224 QDTNTAQFELIRLLAGKY----------QNLCVVGDDDQSIYKFRGANIYNILNFEKHFP 273

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I+L  ++RST +IL   + V +     +  +                 
Sbjct: 274 --------DAKTIKLEQNYRSTQNILNAANSVIANNVGRKSKT----------------- 308

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW                 +                A  IA  I+  +        
Sbjct: 309 ----LWTANDEGKKIDFEQFNTGY--------------EEADYIARDIAGGVRNG----- 345

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D  VL R    + L             I               +KDL+A  
Sbjct: 346 ----DYHYGDYAVLYRTNAQSRLFEERF----IVSNIPYKIVGGVNFYARKEVKDLLAYL 397

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI-----S 479
           + I +  DDL+   +L  P        + ++         + Y+ +++           S
Sbjct: 398 KTIDNARDDLAVRRILNVPKRGIGATTVNRVSDYAESYDISFYDALKRADEIPSIGKAAS 457

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536
           K +  +  I       +F S  D    ++      ++  +   +E     + +DE L+  
Sbjct: 458 KVKPFVNLIQVFRSKLEFISISDLLREVIEETGYVKELEAEGTDEAEARIENIDELLSKV 517

Query: 537 LRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           +  E++    +L   + E+         +   + + V +MT+H+AKGLE P V+L     
Sbjct: 518 VSYEESEEHPTLSGFLEEVALVADID--SLEDDSDYVVLMTLHSAKGLEFPKVYLAGMED 575

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                    +         EE  RL YVG+
Sbjct: 576 GLFPS-------------------------------YMSITSDDSSEQLEEERRLAYVGI 604

Query: 656 TRASDQLIICKHS 668
           TRA  +L I    
Sbjct: 605 TRAMKELTITCAK 617


>gi|319655031|ref|ZP_08009102.1| PcrA protein [Bacillus sp. 2_A_57_CT2]
 gi|317393298|gb|EFV74065.1| PcrA protein [Bacillus sp. 2_A_57_CT2]
          Length = 743

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 119/677 (17%), Positives = 214/677 (31%), Gaps = 118/677 (17%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           Q+   +  +  + ++ K  D +  L        ++       K          +A  +  
Sbjct: 121 QQSVIKSILKDKNLDPKKFDPRAILGSISSAKNELITPEEYAKTAG--DYIQQVASDVYT 178

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  ++N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +
Sbjct: 179 EYQKRLRRNQALDFDDLIMITIQLFQR---VPEVLEYYQRKFQYIHVDEYQDTNRAQYML 235

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L   F          + L  VGD  QSIY + GA+   +L  ++             
Sbjct: 236 VKLLASRF----------KNLCVVGDSDQSIYKWRGADIANILSFEKDYPN--------A 277

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             I L  ++RST  IL   ++V S   N +  +                     LW    
Sbjct: 278 QTIMLEQNYRSTKRILLAANEVISKNLNRKPKN---------------------LW---- 312

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                     +  +           S    A+ +A  I   I +               D
Sbjct: 313 ---TENAEGNKIFYYRA-------DSEQGEAQFVAGKIKEYISSGKR---------SFSD 353

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           I +L R    + ++  +         I           D   IKD++A  R I + +DD+
Sbjct: 354 IAILYRTNAQSRVMEEVL----LKSNIEYSIVGGIKFYDRKEIKDILAYLRLIANPDDDI 409

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQK-----FANCGISKFQHVIKYIH 489
           S   ++  P        + KI         +++E ++       +             + 
Sbjct: 410 SLQRVINVPKRGIGSGSVDKIANFAQLHEMSMFEALESIELIGLSPKITKGAIEFRDLVK 469

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYS 545
               + ++ S  +    +L     R   I+    E     + +DEFL+ T   E+ +   
Sbjct: 470 NYTQMQEYLSVTELVEELLEKSGYRDMLIAEKSIEAQSRLENIDEFLSVTKNFEEASEDK 529

Query: 546 SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           SL   +++L       K          V +MT+H+AKGLE PVVFL+     VF H    
Sbjct: 530 SLIAFLTDLALVADIDKLDDDGEKAESVVLMTLHSAKGLEFPVVFLLGLEEGVFPHSRSL 589

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                          YVG+TRA ++L I
Sbjct: 590 MEESEMEEERRL----------------------------------AYVGITRAEEELYI 615

Query: 665 CKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
                 +       N  + +     +   D      K +   +             P+  
Sbjct: 616 TNAQMRTLFGRTNMNPPSRFIKEIPADLLDGLEPAKKPSPFGSSPFGSPSASRGAQPQRK 675

Query: 723 PLEREETIKQLMDEQKI 739
            + R        DE   
Sbjct: 676 AVVRPSASNTGGDEIDW 692


>gi|294497110|ref|YP_003560810.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551]
 gi|294347047|gb|ADE67376.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551]
          Length = 741

 Score =  316 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 129/756 (17%), Positives = 243/756 (32%), Gaps = 139/756 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++  ++            
Sbjct: 32  GAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKAAREMRERVASIVGGVAEDIWIST 91

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKK------------SQDEFIKI 110
           F  +    L +        +N    +   +   +K  LK                     
Sbjct: 92  FHSMCVRILRRDIDRIGFNRNFTILDSTDQLSVIKNILKDQNIDPKKFDPRSLLGSISSA 151

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++     + F  T A     +   +   YE+  KKN  LDF+DLI+ T  L K+      
Sbjct: 152 KNELKVAEEFDKTAAGPYEEVVSKVYKEYEKRLKKNQALDFDDLIMTTIQLFKR---VPE 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ ++R L   F            +  VGD  QSIY 
Sbjct: 209 VLTYYQRKFQYIHVDEYQDTNHAQYMLVRLLAARFE----------NVCVVGDSDQSIYR 258

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++   K           I L  ++RST  IL   + V +   N +  +
Sbjct: 259 WRGADITNILSFEKDYPK--------AKTILLEQNYRSTKTILAAANGVIANNMNRKVKN 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       ++    +   + +  +           A+ 
Sbjct: 311 ---------------------LW------TENDEGQKIYHYQAMSEHDE--------AQF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I   + +            +  D  +L R    + ++  +         I+     
Sbjct: 336 VARKIKEAVDSGKR---------KYSDFAILYRTNAQSRVMEEVL----LKSNINYTIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKDL+A  R I +Q+DD+S   ++  P        + K+         +++
Sbjct: 383 GIKFYDRKEIKDLLAYLRLIANQDDDISLARIVNVPKRGVGATSVDKVANYGNVHDISIF 442

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +              +     I  L  +  + S  +    +L     R+       
Sbjct: 443 KALDEVELMGLTGKATKALRDFQSMISNLAQMQDYMSVTELVEQVLERTGYREALKVEKT 502

Query: 523 NEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAH--SANHNEVRIMT 576
            E     + +DEFL+ T   E+ +   SL   +++L       K        + +V +MT
Sbjct: 503 IEAQSRLENIDEFLSVTKTFEEASEDKSLVAFLTDLALVADIDKLDDEEEEENEQVILMT 562

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE PVVFL+     VF H                                    
Sbjct: 563 LHSAKGLEFPVVFLMGMEEGVFPHSRSL-------------------------------- 590

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              + +  EE  RL YVG+TRA  +L +      +   K+N       +         + 
Sbjct: 591 --FEDNEMEEERRLAYVGITRAEQELYLLNAQMRTLFGKTNVNPKSRFI-------GEIP 641

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
              + +        A   S          R+  + +
Sbjct: 642 SELVESLNEAMRKPAAGRSGASASPFAARRQAAVAK 677


>gi|253734985|ref|ZP_04869150.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253727167|gb|EES95896.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 730

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 119/711 (16%), Positives = 231/711 (32%), Gaps = 128/711 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ Q L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNKAAREMKERVQKLVGDQAEVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKNENIDSKKFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +         +   + + Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 VLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++   +         + I L  ++RST  IL    +V       +   
Sbjct: 255 WRGADIQNILSFEKDYPE--------ANTIFLEQNYRSTKTILNAAHEVIKNNSERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +  N ++  +        +       A  
Sbjct: 307 ---------------------LW-------TANTNGEKIHYYEAMTERDE-------AEF 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + +D+ +L R    + ++            +      
Sbjct: 332 VIREIMKHQRNGK----------KYQDMAILYRTNAQSRVLEETF----MKSNMPYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + K+         +++
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINVPKRGVGPSSVEKVQNYALQNNISMF 437

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +    G+SK       +  + I  LI   +F   H+    +L     R+       
Sbjct: 438 DALGEADFIGLSKKVTQECLNFYELIQSLIKEQEFLEIHEIVDEVLQKSGYREMLERENT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++     E+N+    Q LI+ L           +   N V +MT+H+
Sbjct: 498 LESRSRLENIDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADTENGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   IK  
Sbjct: 558 AKGLEFPIVFIMGMEESLFPHIR--------------------------------AIKSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                +E  R+ YV +TRA + L I   ++     +         + +   
Sbjct: 586 DDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEIPE 636


>gi|225388641|ref|ZP_03758365.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme
           DSM 15981]
 gi|225045317|gb|EEG55563.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme
           DSM 15981]
          Length = 769

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 121/756 (16%), Positives = 246/756 (32%), Gaps = 137/756 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L            
Sbjct: 18  GAGSGKTRVLTHRVAYLIEEKEVNPWNIMAITFTNKAAGEMRERVDKLVGFGAESIWVST 77

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F       L +         +    + + +   +K+  K    +  ++++R     +  +
Sbjct: 78  FHSSCVRILRRHIEALGYSTSFSIYDTDDQRTLMKQVFKTLDVDTKQLKERGALSAISSA 137

Query: 123 TLASL---------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
               +                    +   Y++  KKN  +DF+DLI+ T +L +      
Sbjct: 138 KDKLIGPEEFLLNATGDFRQRRIGEIYQEYQKQLKKNNAMDFDDLIVKTVELFQNNPD-- 195

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     +   +I++DE QDT+L Q+++I  L   +          + L  VGD+ QSIY
Sbjct: 196 -VLSYYQERFKYIMVDEYQDTNLAQFKLISLLAAKY----------KNLCVVGDDDQSIY 244

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA  + +L  +               +I+L  ++RST +IL   + V       +  
Sbjct: 245 KFRGANIENILNFEDAFP--------GARVIKLEQNYRSTQNILNAANGVIRHNRGRKDK 296

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW        +        +  + ++  +       A 
Sbjct: 297 T---------------------LW-------TANSEGTLVHFKQFENARDE-------AD 321

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I +                  +D  VL R    + L+          Y +     
Sbjct: 322 YVARQIRD-------------SGFSYQDQAVLYRTNAQSRLLEER----CIYYNVPYRLV 364

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                     IKD++A  R I +  DDLS + ++  P        + ++         ++
Sbjct: 365 GGVNFYQRKEIKDILAYLRTIANGVDDLSVLRIINVPKRGIGATTMGRVTIFASEHGMSL 424

Query: 467 YEYIQKFAN-----CGISKFQHVIKYIHEL--IHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           Y+ ++            +K +  +  I        ++  +  D    IL     RQ+  +
Sbjct: 425 YDALKAARQVPGLGKAAAKIEAFVGQIDSFKVRANSEDFTIQDLIEGILDETGYRQELEA 484

Query: 520 RFGNE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               E    ++ ++E +N  +  EQ + + SL E + ++             + N V +M
Sbjct: 485 EGEIESQTRLENIEELVNKAVSYEQDSEHPSLDEFLEQVALVADIDNMD--ESENRVTLM 542

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P V+LV     +F                                     
Sbjct: 543 TLHSAKGLEFPKVYLVGMEDGLFPSMMS-------------------------------- 570

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           I    KS  EE  RL YVG+TRA ++L++          ++        V +   +    
Sbjct: 571 ITADDKSEIEEERRLCYVGITRAREELVMTSARQRMVNGETRYSKPSQFVEELPASAVEF 630

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
            +++   S           +      T    ++++ 
Sbjct: 631 DRLEPALSGYGGFGGGSGSAGGSGRKTDAYADDSLP 666


>gi|167766232|ref|ZP_02438285.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1]
 gi|167712059|gb|EDS22638.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1]
 gi|291559884|emb|CBL38684.1| ATP-dependent DNA helicase PcrA [butyrate-producing bacterium
           SSC/2]
          Length = 733

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 101/571 (17%), Positives = 183/571 (32%), Gaps = 114/571 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++  K N  LDF+DLI  T +L +       +     +   +I++DE QDT+ 
Sbjct: 169 AQIYKEYQKQLKANNALDFDDLIFKTVELFQFHPE---VLDYYQERFRYIMVDEYQDTNT 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ++++  L   +          + L  VGD+ QSIY F GA  K +L  + +  +    
Sbjct: 226 IQFQLVSMLARKY----------QNLCVVGDDDQSIYKFRGANVKNILNFENVFPEAV-- 273

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I+L  ++RST +IL   ++V    +  +                        L
Sbjct: 274 ------TIKLEQNYRSTKNILNAANEVIKHNKGRKTKK---------------------L 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W                 +  Y     +       AR+I + I ++              
Sbjct: 307 W-------TENEEGDLIEFHQYGTEYEE-------ARKIIHEIEDLSKEG---------- 342

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              K++ +L R    + +             I               +KD+++  + + +
Sbjct: 343 YDYKNMAILYRTNAQSRVFEESF----MIKNIPYRIVGGTNFYQRKEVKDILSYLKVVDN 398

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKFQHV 484
             DDL+   ++  P        I KI         +  +      +         K    
Sbjct: 399 GLDDLAVRRIINVPRRGIGAATIEKINVYAVEHNISFLDACFSADSIDTLGNAKKKINGF 458

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
              I E     Q  S  + F  I           +    E     + ++E LN  +  EQ
Sbjct: 459 ADLIREFRRKMQEGSLEELFKYITDETGYIANLKAEETEEAEGRIENINELLNKVVIYEQ 518

Query: 542 N-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               ++L EL+ E+             + N V +MT+H+AKGLE P VF+      +F  
Sbjct: 519 EAEEANLSELLEEIALVADIDN--LEDSDNRVVLMTLHSAKGLEFPYVFICGMEDGIFPS 576

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                      + ++                                 RL YVG+TRA  
Sbjct: 577 YMTVMSEDDDDMEEE--------------------------------RRLCYVGITRAKK 604

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           +L +        + ++        + +    
Sbjct: 605 KLYLSAAKRRMMQGRTQFNKVSRFIDEIPEQ 635


>gi|125975357|ref|YP_001039267.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC
           27405]
 gi|256005497|ref|ZP_05430459.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360]
 gi|281419317|ref|ZP_06250332.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20]
 gi|125715582|gb|ABN54074.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC
           27405]
 gi|255990552|gb|EEU00672.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360]
 gi|281406937|gb|EFB37200.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20]
 gi|316939472|gb|ADU73506.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 1313]
          Length = 741

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 104/626 (16%), Positives = 201/626 (32%), Gaps = 99/626 (15%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   +             + ++   L +          
Sbjct: 27  GAGSGKTKVLTHRIAYLIKEKNVHPASILAITFTNKAAREMRERIDRLVEDVSDSIWVST 86

Query: 66  FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +        KN +  +   +   +K+ LK+              +   + 
Sbjct: 87  FHSMCVRILRRDIEKIDYDKNFVIFDYADQQNVVKDCLKELNLSDKNFPPKSILEMIGRA 146

Query: 111 RDRFNTYKMFKSTLA-SLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           +D   T   +    +    +     +   Y++  K+N  LDF+D+I+ T  L        
Sbjct: 147 KDELITPDSYLKMYSGDFRMEKIARVYELYQKKLKQNNALDFDDIIMLTIKLFLDNPE-- 204

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     ++  +IL+DE QDT+  Q+ ++  L + +          R L  VGD+ QSIY
Sbjct: 205 -VLNYYQRKFKYILVDEYQDTNTAQYSLVSLLAQGY----------RNLCVVGDDDQSIY 253

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA  + +L  ++          +   +I+L  ++RST  IL   + V       +  
Sbjct: 254 GWRGANIRNILDFEKEF--------KDAKVIKLEQNYRSTQIILDAANHVIKNNVGRKAK 305

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW        +        +    +   +       A 
Sbjct: 306 R---------------------LW-------TNNKGGDGIRYLECLNEHEE-------AY 330

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I  +                 KD  VL R    + +I            IS    
Sbjct: 331 FVASEIKRLCREQNR---------SYKDFAVLYRINAMSRVIEDEL----MREGISYKIF 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                 D   IKD++A  R I +  D++S   ++  P        I            ++
Sbjct: 378 GGLRFYDRKEIKDVIAYLRVIQNPSDNISLKRIINEPKRGIGNATIDTAERLANERGVSI 437

Query: 467 Y-----EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           +                SK +  +  I+ L   +   +  +    +L      + +    
Sbjct: 438 FSIISSAAEIPELARASSKLEKFVSLINSLRAQSMVMTASEMIEEVLERTGILEAYRQEN 497

Query: 522 GNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             E     + + E L+  +  E ++   SL + ++ +             N   V +MT+
Sbjct: 498 TLEAQSRIENIKELLSVAIEFENESEEKSLTDFLAHVSLVSDVDTMD--ENSEYVALMTL 555

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHI 603
           H+AKGLE PVVFLV     +F     
Sbjct: 556 HSAKGLEFPVVFLVGMEEGIFPGYRS 581


>gi|302670353|ref|YP_003830313.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316]
 gi|302394826|gb|ADL33731.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316]
          Length = 847

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 118/730 (16%), Positives = 213/730 (29%), Gaps = 130/730 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   +            
Sbjct: 27  GAGSGKTRVLTHRVAYLIDECNVNPWNIMAITFTNKAAGEMRERVDKIVGFGAESIWVST 86

Query: 66  FSLLSSFFL------------------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
           F       L                      T  K+I  +   + +     ++  S  + 
Sbjct: 87  FHSSCVRILRRYADKLGFSNNFTIYDTDDSKTLMKDICKKYQLETTQLKLRQIMSSISKC 146

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                    Y +                 Y+ A KKN  +DF+DLI+ T +L K      
Sbjct: 147 KDNLVSPEEYALATQNDFIKAKISKAYLEYQAALKKNNAMDFDDLIMKTVELFK---ACP 203

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     +   +I++DE QDT+  Q+E+IR L + +            L  VGD+ QSIY
Sbjct: 204 EVLDSYQERFRYIMVDEYQDTNNAQFELIRLLADKY----------HNLCVVGDDDQSIY 253

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA  + +L  +++            ++I+L  ++RST  IL   + V       +  
Sbjct: 254 RFRGANIRNILDFEKVYP--------DATVIKLEQNYRSTQQILDAANAVIHNNRGRKDK 305

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW         + N +      +  +  +       A 
Sbjct: 306 A---------------------LW-------TDEKNGEFVKLKQFDTAYDE-------AE 330

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            IA  I  +              +   +  VL R    + LI            I     
Sbjct: 331 FIAGDIGKLKRNG---------KLSYDECAVLYRTNAQSRLIEERF----VHEGIPYDIV 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     IKDL+A  + I +  DD++   ++  P        I  +         + 
Sbjct: 378 GGVNFYSRREIKDLLAYLKTIDNGSDDIAVKRIINVPKRGIGATTIDYVQNYADERKISF 437

Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI--- 518
           Y+ + +            K +  +  I       +  S  D    ++             
Sbjct: 438 YDALCEADQIMAVSRSAGKLKDFVTMIRAFRTKMKTYSLEDLLKDVIDTVGYMNYLRTLD 497

Query: 519 ---SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRI 574
                  N+    +DE ++     E+N       L   LE+            ++ +V +
Sbjct: 498 EDDDSEDNDRAQNVDELISKIASYEENEEVEQPTLSGFLEEVALVADIDRIGEDNEKVLL 557

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H+AKGLE   V+L      VF                                 ++ 
Sbjct: 558 MTLHSAKGLEFEHVYLAGMEEGVFPS------------------------------YMTL 587

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
             +       EE  RL YVG+TRA   L +C         ++        V +   N   
Sbjct: 588 QNEDSDPEGIEEERRLAYVGITRAKKHLTLCAARRRMVRGETMYNRLSRFVTEIPDNLLD 647

Query: 695 VKKIKLTNSI 704
                     
Sbjct: 648 KSGASSEKPA 657


>gi|138893931|ref|YP_001124384.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
 gi|134265444|gb|ABO65639.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2]
          Length = 724

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 123/695 (17%), Positives = 224/695 (32%), Gaps = 137/695 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   N             + ++ Q L   +        
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKHVVPWNILAITFTNKAAREMRERVQALLGGAAEDVWIST 91

Query: 66  FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106
           F  +    L                  T + +  K I+  + I+ K  + +  L      
Sbjct: 92  FHSMCVRILRRDIDRIGINRNFSILDPTDQLSVIKAILKEKNIDPKKFEPRTILGTISGA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +       K  +++     +   +   Y++   +N  LDF+DLI+ T  L  +    
Sbjct: 152 KNDLLTPEQFAK--RASTYYEKIVSDVYQEYQQRLLRNHSLDFDDLIMTTLQLFDR---V 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +      +  +I IDE QDT+  Q+ +++ L E F          + + AVGD  QSI
Sbjct: 207 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +R              +I L  ++RST  IL   ++V     N + 
Sbjct: 257 YRWRGADIQNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW             +  ++    +   +       A
Sbjct: 309 KR---------------------LW-------TENPEGKPITYYEAMNEADE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +A  I   I +            +  D  VL R    + +I  +         I    
Sbjct: 334 QFVAGRIQEAIESGAR---------RYSDFAVLYRTNAQSRVIEEML----LKANIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I + +DDLS + ++  P        I K+         +
Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 440

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++E + +                    + +   + ++ S  +    +L     R    + 
Sbjct: 441 LFEALGELEMIGLSAKATGALAAFRGQLEQWTQLQEYVSVTELVEEVLDKSGYRDMLKAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573
              E     + LDEFL+ T   E  +   SL   +++L              +   + V 
Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENASDDKSLIAFLTDLALISDLDELNGNDQTEEGDAVV 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFL+     +F H                                 
Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLDDEDEMEEE-------------------- 600

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                          RL YVG+TRA ++L++    
Sbjct: 601 --------------RRLAYVGITRAEEELVLTSAQ 621


>gi|302037409|ref|YP_003797731.1| hypothetical protein NIDE2086 [Candidatus Nitrospira defluvii]
 gi|300605473|emb|CBK41806.1| conserved protein of unknown function, putative ATP-dependent
            nuclease, subunit A [Candidatus Nitrospira defluvii]
          Length = 1128

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 141/925 (15%), Positives = 302/925 (32%), Gaps = 62/925 (6%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK------NIITQEINKK 92
             +     +L +    ++      +     L +          +        ++ +++   
Sbjct: 238  RKAQAERLLARYDRPKRRKIELMLAAVADLFALLLAEGLGAVRSFSGESQELLLKDLGAA 297

Query: 93   SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
                +E   ++ +   +I  R       +     L L         ++   +  L F+ L
Sbjct: 298  PTGWEEDDYEAVESLQRIAKRLLRVD-HELLQNLLALLSPFVQLVRKSFLDSGWLTFDGL 356

Query: 153  IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE----DFFVGKN 208
            +     LL+       IR ++ ++   +L+DE QDT  +Q+E++  L E         + 
Sbjct: 357  VGKARTLLRDHP---PIREQLKRDYRALLVDEFQDTDPVQYEIVLYLAERPGTQAGSWRE 413

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
            T      LF VGD KQSIY+F  A+ +         +      G      EL  +FRS A
Sbjct: 414  TELESGKLFIVGDPKQSIYAFRRADIEAFDHVVDRLE------GSGALRCELATNFRSHA 467

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
             +L +V+ VF+    AQ   +     +  + +R              SQ  +     +  
Sbjct: 468  QVLDLVNGVFNRLLVAQPAIQPPNVPLTVQPNRS-------------SQFRNPGVELRLV 514

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIG--TDTIFSNGKKRVIQAKDILVLVRKRKDT 386
             +     L   ++  + A +IA  +S ++        + G +  ++   I +L RK    
Sbjct: 515  ASEDDGELDSAAATRVEAEQIALMVSGLLRPAGQGGEARGPENGLRPGHIALLFRKLTQA 574

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                   R     + I+ + +          + DL+ + R + +  D ++ V +L+S + 
Sbjct: 575  EHYLEALR----RHGIAYIIDGEKHFYRRQEVIDLVNILRCVDNPHDRIALVGLLRSAVG 630

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
               +  +  +  +        E +  +++      + +   +  L   A  C   +   L
Sbjct: 631  GLPDSALVSLQERAALDYRAVERLADWSSSHAEPLRRLYGRLARLHEQAPRCPLPEVLDL 690

Query: 507  ILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            I       +   +   G + +  L +              +L   +  + +         
Sbjct: 691  IFAQLPVLELAATSLHGEQAVANLFKVRQMAADLADRPNLTLNGFVELMLERLTEQPEEA 750

Query: 566  SANH-----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
             +       + VR++T+H AKGLE P+V L        + +   +  I    +       
Sbjct: 751  ESALSEDTLDAVRVLTIHKAKGLEFPLVILAGLHHGDGAGRGPARPLIWHDWSTGVQGLD 810

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
               +      +V+   +  +   Q E  RL YVGMTRA + L++         + +    
Sbjct: 811  LGDRCSLGAVLVA---EKARTREQAERRRLFYVGMTRARECLVLSGALPRRRVRGALLEL 867

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
              +         E+ + I +     +   +  +      +       E         +  
Sbjct: 868  LEEAAGAELGRAEQ-QDIPVGAVGLRQIVLQGDDRPPARQRERPVELEGAAMDRSFSERW 926

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ----TFNRGLIIHKLLQVIFTL 796
                   K   +EP +++PS    K     E      +        G I+H+LLQ     
Sbjct: 927  MLRDRNWKAQRSEPLMVSPSDFIQKPAPASERETGRVRRVTPGKTVGTIVHRLLQYWDFT 986

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-----SEVSV 851
             +   +  +  + +           + ++  +  LL     + A            EV  
Sbjct: 987  ADVASQVALIDHTSLALDEPDTVMQEAVIEEVRDLLRTFAQSAAYDRLRRATVIGREVPF 1046

Query: 852  SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
                N      I+ G ID +      ++I +YKT      ++      +  Q  +Y   +
Sbjct: 1047 LVPWN--GGRQIMEGVIDLLYRIDGALWIADYKTDMIPADQVAARAELYREQARLYRAAV 1104

Query: 912  KDSYPNKSLVCL-LIYVSEPKVFII 935
            + S   + +     I++       +
Sbjct: 1105 EQSL-GEPVTGFEFIFLRHGVAVTV 1128


>gi|291521009|emb|CBK79302.1| ATP-dependent DNA helicase PcrA [Coprococcus catus GD/7]
          Length = 768

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 125/737 (16%), Positives = 233/737 (31%), Gaps = 135/737 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV+  N             + ++   +            
Sbjct: 27  GAGSGKTRVLTHRIAYLIDECQVNPWNILAITFTNKAAGEMRERVDQIVDFGAEDIWVST 86

Query: 66  FSL--------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQDEFI 108
           F                    F       QK +I    +++N  +   KE+         
Sbjct: 87  FHSTCVRILRRYIDRLGYDRSFTIYDGDDQKTVIKEVCKKLNIDTKIYKER--TLLSAIS 144

Query: 109 KIRDRF---NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
             +D       Y +      +      +   Y++  + N  LDF+DL+  T +L K    
Sbjct: 145 SAKDEMIGPKEYLLRSEGDYARQRIAQVYEEYQKRLRSNNALDFDDLLFKTVELFKTD-- 202

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            A +         +I++DE QDT+ +Q++ +  L   +          R L  VGD+ QS
Sbjct: 203 -AEVLNYYQDRFKYIMVDEYQDTNTVQFQFVSLLAAKY----------RNLCVVGDDDQS 251

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY F GA    +L  ++              +I+L  ++RST  IL   + V    +  +
Sbjct: 252 IYKFRGANIHNILDFEKTFP--------DAKVIKLEQNYRSTKTILNAANGVIHHNQGRK 303

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             +                     LW                +   Y     +       
Sbjct: 304 DKT---------------------LW-------TDNEQGVPIALNQYQTEYEE------- 328

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  I   I+            ++   + KD  VL R    + ++            I   
Sbjct: 329 AMGIVNDIAA---------KTERHEAEYKDFAVLYRTNAQSRVLEEKF----VTRNIPYR 375

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETE 464
                       IKD++A  + I + +DD++   ++  P        + K          
Sbjct: 376 VVGGVNFYQRKEIKDILAYLKIINNGQDDVAVRRVVNVPKRGIGATTVTKAAEYADQWGI 435

Query: 465 TVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           ++YE  ++           +K    +  I      A++ S  + +  +L      ++  +
Sbjct: 436 SLYEAFKQVDGIPGLGRAAAKINGFVNLIQVFRTKAEYMSLAELYDEVLEDTGYLKELQA 495

Query: 520 RFGNE---VIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
              +E    I+ LDE  N  +  E+     SL EL+ ++             + N+V +M
Sbjct: 496 EQTDEATTRIENLDELRNKIVAYEEETEQPSLNELLEQIALVADVDNMDD--SDNKVILM 553

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P V+L      +F          M  +NDDP                   
Sbjct: 554 TLHSAKGLEFPYVYLCGMEDGLFPS-------YMTIVNDDPM------------------ 588

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    EE  RL YVG+TRA  +L +          ++        V +        
Sbjct: 589 -------EIEEERRLCYVGITRAMKKLTLSYAMCRMMHGQTQYNKISRFVKEIPPQLIGG 641

Query: 696 KKIKLTNSINKDEWIAY 712
              +       ++ + +
Sbjct: 642 SLPRERFPRKAEDDLPW 658


>gi|323138754|ref|ZP_08073819.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242]
 gi|322396001|gb|EFX98537.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242]
          Length = 1130

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 161/928 (17%), Positives = 301/928 (32%), Gaps = 76/928 (8%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER-FS 67
                +              V+ + +   ++    N         L     ++   +    
Sbjct: 219  AAADFAGFMDGAAAAEPETVTIVERLAEMATALANGPDPATPAGLVHLLTSRPHPDLCTK 278

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPD-LKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
              +     +K           ++K   D L +  +                    +  A 
Sbjct: 279  AGAFASYRRKGKWAAAAKQAGLSKADGDRLNDAAETHYTACCDAWAALAQAAAGHALAAL 338

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            +  A+ +   Y + K+ +  LDF+DLI    DLL+  D    +R  + Q   H+L+DE Q
Sbjct: 339  IDEARPILQRYRDHKRASAQLDFDDLIFAARDLLRDYDA---VRRALGQRFVHVLVDEFQ 395

Query: 187  DTSLIQWEVIRSLTEDFFVGKNT----HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DT   Q E+   L  +   G +        P  LF VGD KQ+IY F GA+    ++ + 
Sbjct: 396  DTDPQQTEIFWRLCGEPVDGDDDWTRFRIRPGALFLVGDPKQAIYRFRGADVGTYVQARD 455

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              + +A  +     ++ +  +FRS A ILT V++ F    +A                  
Sbjct: 456  AFRAQAPGS-----LLSISTNFRSCASILTFVNERFEAVLSA-----------------D 493

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
            GQ G   L      +          +          E      A  IA   + +I    I
Sbjct: 494  GQPGFTALDPFHDDRGGPCVAALDIAVADENGKATAEQQRDAEAEAIAELCARLIENHPI 553

Query: 363  FS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                +G +R  Q  DI +L     +                I V       L     I+D
Sbjct: 554  IDRRSGAERACQPGDIALLAPTGAELWRYEEALE----RRGIPVATQAGKGLFRRQEIQD 609

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+AL R +  + D L+   +L+ PL   +E+D+  I      +E   + I +        
Sbjct: 610  LIALTRVLADRRDTLALGALLRGPLVGLTEEDLLDIIWGLPRSEKQPDRIPRLDLGIDPA 669

Query: 481  F------QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDE 531
                   + VI+ +  L       + H   +  +   + R   + R   +       +D 
Sbjct: 670  VIAHPLTREVIERLQSLSRRGNSTTAHALLSQAVDVMRVRPLLLERHRGQAERALANVDL 729

Query: 532  FLNFTLRNEQNSYSSL-QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            +L+ +         +  + + S        ++    A    V + T+H AKGLE P+V  
Sbjct: 730  YLSLSTGYAVRGLRAFAEAMTSAWSDEARAVEGRPDAQEEAVALFTMHAAKGLEWPIVIP 789

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            V+T + V + +          + D      + P             +  K+    E  RL
Sbjct: 790  VNTMTGVIAAESA--------VIDRQTETFYCPVLGVTPEGYETARQAEKEELDRERIRL 841

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             YV  TRA + L++        +   ++  W  +V  S  +   +   +L          
Sbjct: 842  WYVAATRARELLVL-----PRLDTTPSKSAWIGLVDLSLADLPGLDVSRLPAGRTAASAG 896

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                 T        E     +  +      +   +       E   L   + D   +  L
Sbjct: 897  EDNTQTRASFAAEAETIAAAQTRLTWLAPSRDENAAGTVLREEEAALWTGSAD-DQRPEL 955

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK---------EY 821
            E+         RGLI+HKL++ + T    + +  +T       +                
Sbjct: 956  EAAALVQGGRERGLILHKLMEEVLTGETAEAEAALTERAADLIRALGQAPVADPATGLSA 1015

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN--IF 879
            + L   + R L  P +         +E  V    +    +   +G  D +++ +    + 
Sbjct: 1016 EELAACVVRTLALPDIAAL-RPGLLAEFPVYAAQSSDGVETATAGIADALTVGEDGRPVV 1074

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            + ++K+  +           + AQ+S Y
Sbjct: 1075 VVDWKSDVNP---EAQTLDHYRAQVSAY 1099


>gi|253680774|ref|ZP_04861577.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873]
 gi|253562623|gb|EES92069.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873]
          Length = 761

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 108/580 (18%), Positives = 195/580 (33%), Gaps = 116/580 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++  K +  LDF+DLI  T +L KK      I      +  +I++DE QDT+ 
Sbjct: 170 ADVYLLYQKKLKNSNALDFDDLIFKTVELFKKNPD---ILEFYQNKFKYIMVDEYQDTNK 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+++++ L           S+ R +F VGD+ Q IY + GA+ K +L  +    +    
Sbjct: 227 TQYQLVKMLA----------SAHRNIFVVGDDDQCIYQWRGADIKNILDFEGDYPE---- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RS A+IL   + V       +                         
Sbjct: 273 ----AKVIKLEENYRSKANILNAANTVIKHNSQRKNKVL--------------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                       + ++      +  + +           A  I  +I  +          
Sbjct: 308 -------RTQNSDGEKIKIYRAYSDIDEGI-------FTANEIKRLIEKENR-------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  +L R    + +   +         I           D   IKD+ A  +FI +
Sbjct: 346 -SFKDFAILYRTNAQSRMFEDVF----MKRDIPYRIIGGLKFYDRKEIKDITAYLKFINN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483
            +DD+S   ++  P        I KI    +  +          E I   +   IS    
Sbjct: 401 LQDDISLKRIINVPKRAIGAATISKIQEFANYMDECMYSVLLDAENIPGLSKRTISSINK 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               I+         S  +    IL +    ++       E    I+ + E ++  +  E
Sbjct: 461 FTSLINGFTRTKDKVSVSNLIQEILESTGYMKELKDSNEIEDISRIENIKELVSAAVEFE 520

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +   SL   + ++             + +   +MT+H+AKGLE PVVF+V   + +F 
Sbjct: 521 NTSEDKSLSAFLEKITLVSDVDNYD--EDTDTTVMMTLHSAKGLEFPVVFMVGMENGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                     S  EE  RL YVG+TRA 
Sbjct: 579 G----------------------------------AQSLENFSEMEESRRLCYVGITRAK 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +QL +   SN     ++   +    + +   + + + K +
Sbjct: 605 EQLYMTSASNRKVFGRTVAYSESSFINEISPDLKELVKEE 644


>gi|163815569|ref|ZP_02206942.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759]
 gi|158449206|gb|EDP26201.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759]
          Length = 789

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/815 (15%), Positives = 257/815 (31%), Gaps = 141/815 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  + ++  + + +  V+ +N             +  +   +      +     
Sbjct: 40  GAGSGKTRVITHRVAYLMDHEGVNPLNILAITFTNKAAREMRDRVDLIVGEGADRVWVST 99

Query: 66  FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQ------------DEFIKI 110
           F  L    L +       +KN    + + +   +K  LK  Q             E  K 
Sbjct: 100 FHSLCVRILRRYADKIGYEKNFDIYDSDDQKSTVKSILKDFQIDPKRYPEKMFMSEISKA 159

Query: 111 RDRFNTYKM-FKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++++ +     +   A         +   Y+   KKN  +DF+DLI  T +L +      
Sbjct: 160 KEKYMSPDEFARRNAADYAATKVAEVYTEYQGRLKKNNAMDFDDLIYKTVELFEHNPD-- 217

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +         +I++DE QDT+ IQ+ +++ L   +          R L  VGD+ QSIY
Sbjct: 218 -VLDTYQNRFRYIMVDEYQDTNHIQFLMVKMLARKY----------RNLCVVGDDDQSIY 266

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA    +L  ++  +           +I+L  ++RS  +IL   + V    E  +  
Sbjct: 267 KFRGANITNILNFEKEYE--------DAKVIKLEQNYRSCGNILAAANAVIQHNEGRKDK 318

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW         Q   ++ S+        +         
Sbjct: 319 A---------------------LW-------TDQDAGEKISFDQCDTEYAEGD------- 343

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I  ++             +  +DI +L R    +     +         I     
Sbjct: 344 LVASRIKTLVRQG----------VGYRDIAILYRTNAQSR----VLGEKMVYANIPYRVY 389

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     IKD++A  + I +  D+L F  ++  P     E  + K+         ++
Sbjct: 390 GGTNFYARKEIKDVLAYLKVINNTTDNLYFRRVVNVPKRGIGEASLSKVESFADAYGLSM 449

Query: 467 YEYIQK------FANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFIS 519
            +   +       A     K +     I     + Q   S    +  IL       + I+
Sbjct: 450 MDAAARADEIPGMAVKTSGKIKQFATLIQSFRDMLQDGESLDAVYDRILEDTGYESELIA 509

Query: 520 RFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               E    ++ +DE  N  +   ++N  + L E + E+           S + N+V++M
Sbjct: 510 EHTEESMTRLENIDELRNKVVEFVDENEEAGLSEFLEEIALVSDLDSM--SEDDNQVKLM 567

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P VF+     +VF                                     
Sbjct: 568 TLHSAKGLEFPYVFICGMEDRVFPSGMALNSDDPD------------------------- 602

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT-------SNEKKSNQRTWYDMVYDS 688
                    EE  RL YVG+TRA  +L +             S++     R    ++++ 
Sbjct: 603 -------ALEEERRLCYVGITRAMKKLYLSAARERMMHGNRISSDVSRFIREIPPLLFEH 655

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
             +   + K + T S+++         + +  +   +     K+   +            
Sbjct: 656 EADMRNMAKRRETESVDRYNRGDLYSDSSYGSSYNYKPRTPGKEYGQKNPYSSYARQKSY 715

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
              +       + + +        +    +    G
Sbjct: 716 GQPSTQPAFGKAFVVSASGKPDYEVGDRVRHIKFG 750


>gi|229817712|ref|ZP_04447994.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM
           20098]
 gi|229785501|gb|EEP21615.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM
           20098]
          Length = 889

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 121/732 (16%), Positives = 222/732 (30%), Gaps = 124/732 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +          A  L+         +  
Sbjct: 94  AAAEMRERLTALIGPVAQRMWVSTFHSACVRILRRDGK-----ALGLKSGFSIYDSADS- 147

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L     T+     K    + I  +  D K +L   + +       F            
Sbjct: 148 ERLVKIIATEFNVDVKRYTPRSILGRISDYKNQLIGWRAQLAAYAPDFKPGSRNYRISKF 207

Query: 127 L---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   + A YE        +DF+DLI+ T +LL+       +      +  +IL+D
Sbjct: 208 DNVEELYAIIYAEYEHRLAMANAVDFDDLIVRTVELLRDHPD---VADYYRHKFRYILVD 264

Query: 184 EVQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ +IR L                    P  +  VGD  QSIY+F GA+ + 
Sbjct: 265 EYQDTNHAQYVLIRELAGVDAGETPAPTATAAGRQGPAWVTVVGDSDQSIYAFRGADIRN 324

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   +                I L  ++RST  IL   + V S  E  +           
Sbjct: 325 IQDFEEDFPN--------AKTILLEQNYRSTQTILDAANAVISHNEGRKPKK-------- 368

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  V          +     +  +       A   A  +A  I+ +
Sbjct: 369 -------------LWTAV-------GKGEPIVGYAADN-------AQQEAVWVASEIARL 401

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              D          +   D+ ++ R    +  +         +  +           +  
Sbjct: 402 HAED---------GVAYSDMAIMYRANAQSRSLEEAL----INAGLPYQLIGGTKFYERK 448

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS-EDDIFKICTQRHETETVYEY--IQKF 473
            IKD +A  + IL+  DD++   +L  P        +   +   R    + ++     + 
Sbjct: 449 EIKDALAYLQAILNPADDVNLRRILNVPKRGLGARAESIVLEYARERGTSFFDALMHMEQ 508

Query: 474 ANCGISKFQHVIKYIHELI------HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524
                ++    +K   +L+        A    P D    +L      ++       +   
Sbjct: 509 IEDMPTRTAKGLKAFRDLMASMSAFARANINKPSDIVAEVLAKSGLLEELQKSVDPQDQS 568

Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKG 582
            ++ L +  +     EQN+   +L   +               + +  +V +MT+HTAKG
Sbjct: 569 RVENLSQLQSTAAEYEQNTPDATLGGFLETTALVADSDQLPNGNEDSGKVTMMTLHTAKG 628

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFL       F H                                         +
Sbjct: 629 LEYPVVFLTGLEQGTFPHSRSL----------------------------------EDTA 654

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E  RL YVG+TRA  +L I + +  +   ++N+      + +        K+ +  +
Sbjct: 655 ELSEERRLAYVGITRAKRRLYITRAAVRAQWGQANEMLPSQFLEEIPDELIDWKRRETGS 714

Query: 703 SINKDEWIAYEW 714
              +  W   + 
Sbjct: 715 ERMRTGWGDGDE 726


>gi|323484921|ref|ZP_08090276.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
 gi|323401802|gb|EGA94145.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
          Length = 813

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 113/722 (15%), Positives = 227/722 (31%), Gaps = 131/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV+  N             + ++   +            
Sbjct: 27  GAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEMRERVDKIVGFGAESIWVST 86

Query: 66  FSL--------------LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS-QDEFIKI 110
           F                 S+ F       Q+ ++ Q   +   D K+  +++        
Sbjct: 87  FHSSCVRILRRHIEYLGYSTNFTIYDGDDQRTLMKQIFKRLDVDTKQFKERAVLSRISSA 146

Query: 111 RDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           +D   T + F+              +   Y++  KKN  LDF+DLI+ T +L +      
Sbjct: 147 KDDMITPEEFELNAGGDFREKKVAQIYKEYQKELKKNNALDFDDLIVKTVELFQN---VP 203

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     +   +I++DE QDT+++Q++++  L   +          R +  VGD+ QSIY
Sbjct: 204 DVLNYYQERFRYIMVDEYQDTNMVQFKLVDLLAGKY----------RNICVVGDDDQSIY 253

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA  + +L  ++              +I+L  ++RST +IL   + V       +  
Sbjct: 254 KFRGANIENILSFEKAF--------SGAKVIKLEQNYRSTQNILNAANGVIRNNRGRKDK 305

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +  +            +   V+  +   +  +                          A 
Sbjct: 306 TLWTAN---------DEGNLVRFLQFDTAYEE--------------------------AE 330

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I             ++   +  D  VL R    + L+          Y I     
Sbjct: 331 AIVKDIRR---------EKEETGREYSDFAVLYRTNAQSRLLEEK----CILYSIPYRLV 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                     IKD++   + I + +DDL+   ++  P        + K+         + 
Sbjct: 378 GGVNFYQRKEIKDILCYLKTIANGQDDLAVQRIINVPKRGIGATSVGKVTIFASANGMSF 437

Query: 467 YEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           Y+ + +            K     + I +        S  +    +L     +++  +  
Sbjct: 438 YDALLRVRGITTLGKAADKIGVFTEQIEDFKARLPKMSIKELIEEVLENTGYKKEIEAEG 497

Query: 522 GNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             E    +  ++E +N  +   E     +L   + E+             + N + +MT+
Sbjct: 498 EIESETRLQNIEELINKAVSYSENEENPTLDGFLEEVALVADVDNMD--ESENRIVLMTL 555

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P V+L      +F                                     I 
Sbjct: 556 HSAKGLEFPYVYLSGLEDGLFPSSMS--------------------------------IM 583

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              K   EE  RL YVG+TRA ++L +          ++        V +        ++
Sbjct: 584 SDDKDAVEEERRLCYVGITRAREKLTLTMARQRMTNGETRYSRASRFVEEIPAWLLEQEE 643

Query: 698 IK 699
             
Sbjct: 644 QP 645


>gi|110637958|ref|YP_678165.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406]
 gi|110280639|gb|ABG58825.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406]
          Length = 749

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 106/656 (16%), Positives = 218/656 (33%), Gaps = 113/656 (17%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYK-MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           +  ++  +++  I  ++       M     A       L   Y+E   +   +DF+DL+ 
Sbjct: 138 VFNRISAAKNRLISYKEYIANPNYMADDRAALRPEMGKLYQMYQERLIRAGAMDFDDLLF 197

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            T  L  +      +  K   +  +I++DE QDT++ Q+ + + L              R
Sbjct: 198 YTYKLFNEHPD---VLNKYQHKFKYIMVDEFQDTNIAQYNITKKLAAM----------NR 244

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIY+F GA+ + +L  ++   +          +++L  ++RST  I+   
Sbjct: 245 NICVVGDDAQSIYAFRGADIQNILNFEKDYPE--------LKVLKLEQNYRSTKTIVEAA 296

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + V +  +                           +W        ++   +   + +  D
Sbjct: 297 NNVITKNKAQLKK---------------------DVW------TSNESGEKIHVYRAASD 329

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           +           R IA TI         F N     ++ KD  +L R    +       R
Sbjct: 330 NEEG--------RIIAQTI---------FENKMNMQLRNKDFAILYRTNSQSRSFEEALR 372

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            L     I+              IKD++A  RF+L+ +D+ SF  ++  P     +  I 
Sbjct: 373 KL----NINYKVVGGMSFYQRKEIKDVLAYLRFVLNDQDEQSFRRIVNFPKRGIGDTTIA 428

Query: 455 KIC-TQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLILG 509
           K+      +  TV++ +    +    +     +  +  I     +A      +    I  
Sbjct: 429 KLFVIADEQGTTVWDILCNVKSIMTGRLVPVIEGFVDLIKSYKILANTKDAFEAANEIAK 488

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                ++       E     + + E LN             + L S L++          
Sbjct: 489 QSGLLKELYEDKTVEGIARYENVQELLNGIKEFVDRPDQEDKSLGSYLQEISLLTDTEKD 548

Query: 567 -ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             + + V +MT+H+AKGLE   VF+V     +F    +                      
Sbjct: 549 KEDKDSVTLMTIHSAKGLEFNQVFVVGIEEDLFPSAMMLNS------------------- 589

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                          ++  EE  RL YV +TRA  +L +   ++     +    +    +
Sbjct: 590 ---------------RADLEEERRLFYVAITRAEKRLTLSFATSRYRFGQLKSCSPSRFL 634

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
            +      ++  I   +  +++   A+           ++ +  +       +  K
Sbjct: 635 EEIDPRHLQMTSITANSIGSQESGPAFSGIKPKTAAATVQVKAKVAPAYTPSEDFK 690


>gi|42524707|ref|NP_970087.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39576917|emb|CAE78146.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 762

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 112/584 (19%), Positives = 200/584 (34%), Gaps = 115/584 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE   KK   LDF+DL++ T DL +   +   +     ++  +I++DE QDT+ I
Sbjct: 178 EVYKAYEREMKKANSLDFDDLLLKTYDLFR---MYPDVLQMYQKKFRYIMVDEYQDTNHI 234

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ +++ L           S+ R L  VGDE QSIYS+ GA+ K +L  ++  +      
Sbjct: 235 QYLLVQMLA----------SAHRNLCVVGDEDQSIYSWRGADIKNILDFEKDFR------ 278

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RS+A+I+     V       +  +                 G     
Sbjct: 279 --DAKVIKLEENYRSSANIVNGATAVIKNNSQRKDKTL----------FTSNDPG----- 321

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                   + +E +     R +A TI +M+              
Sbjct: 322 --------------------DLIHVREEKNEYEEGRFVAKTIQSMMNEGEG--------- 352

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +  R    + ++    R +     I           + + IKD+++  +  ++ 
Sbjct: 353 SYNDYAIFYRTNAQSRVLEEQLRTM----GIPYRLVGGVRFYERMEIKDMISYLKLSINP 408

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD++   ++  P     +  I KI     H+  +++E  +K             K +  
Sbjct: 409 ADDIALKRIINVPARGIGKTTIEKIEEYAAHKNLSMFEAAEKACEERLFNAGTTGKIRRF 468

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           I  + +L   AQ     +FF ++L   +           E    I+ L+E  N   +   
Sbjct: 469 IDLMKDLQQNAQHLKLLEFFAVVLDRTEYLAALKKDESPESQARIENLEELDNAIAQFVQ 528

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E+   S+L   + E+               N V +MT+H +KGLE P VF+V     +F 
Sbjct: 529 ERGEESTLISFLEEMALVNDVDSLDQEQ--NSVTMMTLHISKGLEYPYVFVVGLEENLFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                +   +   EE  RL YVGMTRA 
Sbjct: 587 SARS--------------------------------AESDNEQDVEEERRLAYVGMTRAR 614

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +L +          +         + +   N    K       
Sbjct: 615 QKLWLTYAKMRRVWGQEQFNPPSRFIKEIPQNLIDFKTSAEAPR 658


>gi|20807099|ref|NP_622270.1| superfamily I DNA/RNA helicase [Thermoanaerobacter tengcongensis
           MB4]
 gi|20515591|gb|AAM23874.1| Superfamily I DNA and RNA helicases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 713

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 109/567 (19%), Positives = 191/567 (33%), Gaps = 111/567 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K +   Y+   KK   LDF+D+II T +L K+      I     ++  +I++DE QDT+ 
Sbjct: 176 KEIYKLYQHKLKKINALDFDDIIIKTIELFKENPE---ILEFYQRKFRYIMVDEYQDTNT 232

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +  L +            R L  VGD+ QSIY + GA+ + +L  ++        
Sbjct: 233 PQYYFVNLLAQ----------RHRNLCVVGDDDQSIYGWRGADVRNILNFEKDYP----- 277

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
              +  +I+L  ++RST  IL   + V       +  S                     L
Sbjct: 278 ---EAKVIKLEQNYRSTKIILEAANHVIDNNVYRKKKS---------------------L 313

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W             ++       +   +          +   I  +   +          
Sbjct: 314 W-------TQNKEGEKIVLCELENEREEAE-------FVIQEIIKLKERENR-------- 351

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  +L R    +         +K    +           D   IKD++A  R I++
Sbjct: 352 -SFKDFAILYRTNAQSRPFEEALMKVK----VPYKVVGALRFYDRKEIKDILAYLRLIVN 406

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN-CGISKFQHVIKYI 488
             DD+SF  ++  P        I  +    R +  +++  I+   N           ++I
Sbjct: 407 PYDDISFKRIVNVPRRGIGPATIEALEKVAREKDTSLFFAIEDLKNARNKGSLLQFKQFI 466

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSY 544
            +LI      S  D    IL      ++       E     + L+EFLN     E+ +  
Sbjct: 467 LDLIDKKDAMSVSDLIKYILEQTGYIEELKREESEEAEGRIENLNEFLNAAYEFEESSED 526

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            SL+  ++ +                 V +MT+H+AKGLE PVVF+V     +F      
Sbjct: 527 KSLEAFLAGITLVSDIDMAGDI--GESVVLMTLHSAKGLEFPVVFMVGMEEGLFPSYSSF 584

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL YVG+TR+ ++L +
Sbjct: 585 ----------------------------------EDDHELEEERRLCYVGITRSKERLYL 610

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                 +   +S   ++   + +    
Sbjct: 611 TYARQRNLYGRSQYNSYSRFISEIPER 637


>gi|302871914|ref|YP_003840550.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
 gi|302574773|gb|ADL42564.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
          Length = 714

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 109/550 (19%), Positives = 186/550 (33%), Gaps = 114/550 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +  ++    DF+DL+  T  L +       I  K   +  +IL+DE QDT+  
Sbjct: 169 DVYKLYNKLLREYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNHA 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  I  L++            R +  VGD+ QSIYSF GA  K +L  +++        
Sbjct: 226 QFYFIYLLSQ----------KHRNICVVGDDDQSIYSFRGANIKNILEFEKMF------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
             +  +I+L  ++RST  IL+  ++V       +                        LW
Sbjct: 269 -SEAKVIKLEKNYRSTKTILSAANEVIKNNYYRKSKK---------------------LW 306

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + ++    S FD + +       A  +A ++ N+IG+           +
Sbjct: 307 -------TDNIDGEKIFLYSAFDEMNE-------AEFVASSVKNLIGSG----------L 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VL R    +             Y +           +   IKD++A  R I + 
Sbjct: 343 SPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE------TVYEYIQKFANCGISKFQHVI 485
            DDLS   ++  P        + KI     E         +      F      K    +
Sbjct: 399 HDDLSLFRIINVPRRGIGNSTLEKIKVLSEEYGVSAYTVLLERAKFDFDKKTYEKLNSFV 458

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             I EL   ++  S      L+L      +  +S    E       +++ ++     E+ 
Sbjct: 459 SLIEELKAESENLSVSQTIKLVLDRTGYLESLLSSKSEEEFQRAKNIEQLISAAAIFEEE 518

Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               ++Q  ++ +                +V +MTVH AKGLE  VVFL      +F   
Sbjct: 519 NEEPTMQNFLNSITLNSEEEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFP-- 573

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                        +V        +   EE  RL YV +TRA   
Sbjct: 574 -----------------------------LVRAEEPLEAEKELEEERRLCYVAITRAKKL 604

Query: 662 LIICKHSNTS 671
           L++   +N  
Sbjct: 605 LVLTYANNRR 614


>gi|331270358|ref|YP_004396850.1| UvrD/REP helicase [Clostridium botulinum BKT015925]
 gi|329126908|gb|AEB76853.1| UvrD/REP helicase [Clostridium botulinum BKT015925]
          Length = 761

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 116/638 (18%), Positives = 220/638 (34%), Gaps = 124/638 (19%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKY 132
           L ++   + NI  ++IN+   ++  K+ K +D  I   + +    + F+           
Sbjct: 119 LIKQCMKELNINDKDINE--KEIISKIGKQKDNLITAEEYKKRNERDFRKNK-----IAD 171

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++  K +  LDF+DLI  T +L KK      +      +  +I++DE QDT+  Q
Sbjct: 172 VYLLYQKKLKNSNALDFDDLIFKTVELFKKNPD---VLEFYQNKFKYIMVDEYQDTNKTQ 228

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++++ L           S+ R +F VGD+ Q IY + GA+ K +L  +    +      
Sbjct: 229 YQLVKMLA----------SAHRNIFVVGDDDQCIYQWRGADIKNILDFEVDYPE------ 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              ++I+L  ++RS A+IL   + V       +                           
Sbjct: 273 --ATVIKLEENYRSKANILNAANTVIKHNSQRKNKVL----------------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + ++      +  + +           A  I  +I  +            
Sbjct: 308 -----RTQNSDGEKIKIYRAYSDIDEGI-------FTANEIKRLIKKEDR---------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            KD  +L R    + +   +         I           D   IKD+ A  +FI + +
Sbjct: 347 FKDFAILYRTNAQSRMFEDVF----MKRDIPYRIIGGLKFYDRKEIKDITAYLKFINNLQ 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQHVI 485
           DD+S   ++  P        + KI    +  +          E I   +   IS      
Sbjct: 403 DDISLKRIINVPKRAIGAATVSKIQEFANYMDECMYSVLLDVENIPGLSKRTISSINKFT 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
             I+         S  +    IL +    ++       E    I+ + E ++  +  E  
Sbjct: 463 SLINGFTRTKDKVSVSNLIQEILESTGYMKELKDSNEIEDISRIENIKELVSAAVEFENT 522

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +   SL   + ++             + +   +MT+H+AKGLE PVVF+V   + +F   
Sbjct: 523 SEDKSLSAFLEKITLVSDVDNYD--EDTDTTVMMTLHSAKGLEFPVVFMVGMENGIFPG- 579

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                   S  EE  RL YVG+TRA +Q
Sbjct: 580 ---------------------------------AQSLENFSEMEESRRLCYVGITRAKEQ 606

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           L +   S      ++   +  D + +   + + + K +
Sbjct: 607 LYMTSASTRKVFGRTVAYSESDFINEISPSLKELVKEE 644


>gi|52079148|ref|YP_077939.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52784515|ref|YP_090344.1| PcrA [Bacillus licheniformis ATCC 14580]
 gi|52002359|gb|AAU22301.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580]
 gi|52347017|gb|AAU39651.1| PcrA [Bacillus licheniformis ATCC 14580]
          Length = 739

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 119/720 (16%), Positives = 233/720 (32%), Gaps = 134/720 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++ +++            
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERVESILGPGADDIWIST 91

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110
           F  +    L +            I   S  L       ++                    
Sbjct: 92  FHSMCVRILRRDIDRIGINRNFSILDTSDQLSVIKGILKERNIDPKKFDPRSILGSISSA 151

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++     + ++ T       +   +   Y++  +KN  LDF+DLI+ T  L  +      
Sbjct: 152 KNELIAPEEYEKTAGGFFEQVVSDVYKDYQKKLRKNQSLDFDDLIMTTIVLFDR---VPE 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ +++ + + F          + +  VGD  QSIY 
Sbjct: 209 VLEYYQRKFQYIHVDEYQDTNRAQYLLVKKMAQRF----------QNICVVGDSDQSIYR 258

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++             S+I L  ++RST  IL   ++V     N +  +
Sbjct: 259 WRGADIANILSFEKDYPN--------ASVILLEQNYRSTKRILNAANEVIQNNSNRKPKN 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + S+    +   +        + 
Sbjct: 311 ---------------------LW-------TENDEGAKISYFRGDNEFGEG-------QF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I  ++G+               DI +L R    + +I            I+     
Sbjct: 336 VAGKIRELVGSGKR---------SFSDIAILYRTNAQSRVIEETL----MKANINYNIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKD++A  R + + +DD+SF  ++  P        + KI         +++
Sbjct: 383 GTKFYDRKEIKDILAYLRLVANPDDDISFARIVNVPKRGVGATSVDKIAAYADMNGMSLF 442

Query: 468 EY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E          +    +      + I  L ++ ++ S  +    IL   + R+   +   
Sbjct: 443 EALGQVDFIGLSARAANALDEFRQTIENLTNMQEYLSVTELTEEILEKTEYREMLKAEKS 502

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANH----NEVRI 574
            E     + +DEFL+ T   E Q+   SL   +++L       +           + V +
Sbjct: 503 LEAQSRLENIDEFLSVTKNFEQQSEDKSLVAFLTDLALIADIDQLDQKEEETGNQDAVIL 562

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE PVVFL+     VF H                                  
Sbjct: 563 MTLHAAKGLEFPVVFLMGLEEGVFPHSRSLMEEAEMEEE--------------------- 601

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                         RL YVG+TRA ++L +      +   ++N       + +       
Sbjct: 602 -------------RRLAYVGITRAEEELYLTNARMRTLFGRTNMNPESRFIAEIPEELLD 648


>gi|163789389|ref|ZP_02183828.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7]
 gi|159875243|gb|EDP69308.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7]
          Length = 750

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 113/708 (15%), Positives = 235/708 (33%), Gaps = 132/708 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L +   +      
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAKEMKERVTRLMKEGGSDVWVST 90

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +                 F     + Q+ ++ + + +++ D K+   +    E    
Sbjct: 91  FHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILKERNIDPKKYNPRAILGEISNA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++  +T + ++    S    +       Y+   ++N  +DF+DLI+    L K+   +  
Sbjct: 151 KNELDTPEDYRKRAGSFFEKIVADCYDDYQRELRRNQAVDFDDLIMLAIRLFKESPET-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L E F          + L  VGD  QSIY 
Sbjct: 209 -LDYYQNKFHYIHVDEYQDTNEAQYTLVNMLAERF----------KNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++             + + L  ++RST  IL   + V       +   
Sbjct: 258 WRGANMENILNFEKDYP--------DATTVLLEQNYRSTKFILQAANDVIGNNSKRKVKK 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW           + ++ ++        +  S    +R 
Sbjct: 310 ---------------------LW-------TDNHDGEKITYY-------RGQSEGDESRY 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +  +              D  VL R    + +I            I      
Sbjct: 335 VISKIQEEMKANH---------YNYGDFAVLYRTNAQSRVIEDSL----LKSNIPYKMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET--- 465
                D   I+D++A  R I + +D++SF  ++  P        I K+ T  ++ +    
Sbjct: 382 GHKFYDRKEIRDVLAYLRLIANPDDNMSFERVVNVPKRGIGPGTIEKLRTSSNQYDWSLL 441

Query: 466 ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              +   I   +    ++ +     + +L  + ++    +    +L     ++       
Sbjct: 442 ETALNVSITPISGKAANELEAFGFMMKDLRQMQEYVPVTELVEEVLKRSGYQKSLELERT 501

Query: 523 NE---VIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
            E    ++ + EFL  T + E+      SL   +++L               +EV +MT+
Sbjct: 502 LESETRLENIQEFLTVTQQFEKENTEDKSLLTFLTDLALVSDLDNLE-EEPQSEVTLMTL 560

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE P+VFL+     +F                                       
Sbjct: 561 HAAKGLEFPIVFLIGLEEGIFPLS----------------------------------RS 586

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            +++   EE  RL YVG+TRA  +L I    +     ++   +    +
Sbjct: 587 MMEEDQLEEERRLAYVGITRAEKKLYITNAYSRVLYGRTQSNSASRFI 634


>gi|315924258|ref|ZP_07920482.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622419|gb|EFV02376.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 736

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 116/712 (16%), Positives = 216/712 (30%), Gaps = 134/712 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  + I     P          +   +  M                          +
Sbjct: 63  AAGEMRDRIAAMDIPETNRIWMYTFHAMCARIMRMHAK-----------LLGYGDNFVIY 111

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                  L ++   + ++  ++        +    K +       D+          +A 
Sbjct: 112 DTDDQKRLYKQIAKELDLSDKQYPFGYVIGEISAAKEKGMLPNAFDKLAAGDFRLEKVAL 171

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y EA  +N  +DF+DLI+NT  L K++     I     Q   +IL+DE Q
Sbjct: 172 ------FYHRYREALMQNNAMDFDDLILNTLILFKEQPE---ILAGYQQRFKYILVDEYQ 222

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+E++  L              R L   GD+ QSIY + GA+ + +L  ++    
Sbjct: 223 DTNHSQYELVNLLAG----------GHRNLCVCGDDDQSIYGWRGADIRNILDFEKDYP- 271

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +++L  ++RST  IL   + V +     +  +                  
Sbjct: 272 -------DAKVVKLEENYRSTPVILEAANGVIANNTGRKEKN------------------ 306

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW                       ++      +  A  IA  I  +   +      
Sbjct: 307 ---LWTHNPGSEKI--------------AVSAYDQGNEEADAIADEIERLRRDE------ 343

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   D  VL R    + L             I             + +KD++    
Sbjct: 344 ---AFTYGDCAVLYRTNAQSRLFEEAF----MRRTIPYQLVGGTGFYARMEVKDIVTYLH 396

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGIS 479
            +L+  D+L  V ++ +P        I K+                  E +   +    +
Sbjct: 397 VLLNPADNLGTVRIINTPKRGIGGMTIQKLQDFADFKGYSLMDAVLNVEAVPTLSAGIQT 456

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFT 536
           K +H    + ELI  A   S       ++ A                  I+ L E ++  
Sbjct: 457 KVRHFADMMQELIAAAAEESVAALIKHVIDATGYLTMLEMGKVEKAEARIENLQELISSA 516

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
              E+NS  +   L + LE    T +      +  +V +MT+H AKGLE PVVF+     
Sbjct: 517 ADFEKNSDDT--SLTAYLETVALTSETDKYETDEGKVLLMTLHNAKGLEFPVVFMPGMED 574

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F +                                         +  EE  R+ YVG+
Sbjct: 575 GIFPNARSFDDP----------------------------------AQMEEERRICYVGI 600

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           TRA  +L +   S  +   +   +     + +   +    ++ +  +++  +
Sbjct: 601 TRAEKKLYLSHASERTVFGRRQPQIASRFLRELPADCIHEEEHRSRDAVISE 652


>gi|229137928|ref|ZP_04266527.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST26]
 gi|228645585|gb|EEL01818.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus BDRD-ST26]
          Length = 907

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 132/748 (17%), Positives = 260/748 (34%), Gaps = 68/748 (9%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
           + +D+          I K   L+M    P          L    TL  A++ +     + 
Sbjct: 150 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADLALLGTLSSAAR-ESWTSVYE 208

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
            + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 209 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 268

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                 + L K     ++  K+   ++DF DL      +L ++        + +  +   
Sbjct: 269 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSEEGEMKPSAVALQYRN 328

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 329 KFAEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 381

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
             L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 382 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 438

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
            ++  +S             +    +   + ++           +   A + AR +A  I
Sbjct: 439 ELKLGASYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 489

Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             M+ +     + K    R +Q +D ++L+R     P I    +       I V  +   
Sbjct: 490 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELK----LQGIPVYADLAT 545

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----- 465
              +   +  +M + R I +   D+    +L+SP+   +++++  +     +        
Sbjct: 546 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMS 605

Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
             +     +       K +     +      A+  S  D    + G             G
Sbjct: 606 SFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 665

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTV 577
            +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+
Sbjct: 666 KQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI 725

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE PVVF+   G +  +   +K+  +               + K        + +
Sbjct: 726 HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKR 785

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
            +K     E  R+LYV +TRA ++LI+      + ++          +    H++  +  
Sbjct: 786 KMKMELIAEEMRVLYVALTRAKEKLILIGTVKDATKE------MEKWLDAREHSEWLLPD 839

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLE 725
                +    +WIA     H      LE
Sbjct: 840 HIRAGASCYLDWIAPSLYRHRDSEILLE 867


>gi|307717800|ref|YP_003873332.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM 6192]
 gi|306531525|gb|ADN01059.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM 6192]
          Length = 1152

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 162/936 (17%), Positives = 313/936 (33%), Gaps = 83/936 (8%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
            +W +       +              + +  + L + + +         L     T    
Sbjct: 236  MWEVVEAAWDRVRSRREGGSGLVPEVVREWREALDEVASSLKGLRV-DELRDAIDT---- 290

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
                 + +E+          L     + + + +R       +   +   +    +   E 
Sbjct: 291  -----LKKELGVGKKPPSSSLSAVAGDLVSLLERR------EEASSLFGVLAEWHGEVER 339

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             KK+  +L F D++     LLK+      +R       + IL+DE QD + +Q +++  L
Sbjct: 340  FKKERNLLTFGDVMHLVLTLLKEE---KEVREFYKGRFDAILVDEFQDNNGLQRDLLFLL 396

Query: 200  TEDFFVGKNT-----HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
             E      +         P  LF VGDEKQSIY F GA+    L  K        N    
Sbjct: 397  AERKGRCGDGVPSFEDLEPGKLFVVGDEKQSIYLFRGADVGVFLDLKER-----ANRSSH 451

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              ++ LP ++RS   +L  V+++                 +   + R G   T ++   V
Sbjct: 452  GEVMRLPHNYRSEPGLLDAVNRM---AGAFPEEMRGGIEFLPAEAGREGAGFTPRIEAGV 508

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI--FSNGKKRVIQ 372
              + + +   +                 +  A  +A  I   +    +      + R ++
Sbjct: 509  YVKEEEKARAEGRDLVDAG---------TAEAWWVAGRIRRWVEEGELVVRDGEEVRPVR 559

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              DI VL+R   +        R     + I         L       DL +     +   
Sbjct: 560  YGDIAVLMRTGTNQLAFERAFRA----HGIPYTAAYSRNLFLEAPANDLFSWLFIAVYPH 615

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQ--------RHETETVYEYIQKFANCGISKFQHV 484
            D LS+  +L+ PL   S+ DI ++  +        R E E +    ++     + +++  
Sbjct: 616  DLLSYAAVLRGPLVGLSDRDILRLIEREEGCFSLSREEVEEMLGDEEELLRERVERYERG 675

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLNFTLRNEQNS 543
             +    L+              +      R   + R   +  +   DE + F  R E+  
Sbjct: 676  KEIYDWLVSHRDRVPHERLLRYLWVDCGYRMVLLGREQLHPFLRFYDELVAFVRRWEERP 735

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +   + + E       +        + VRIMT+H AKGLE PVV L   G++       
Sbjct: 736  LARCLDEVKEELGRYGRVDVEEGRGEDAVRIMTIHAAKGLEFPVVVLASCGAESRREGEG 795

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            K  + M       G        K  N +     + +KK   EE  RLLYVG+TRA   L+
Sbjct: 796  KMPYFMVEGVPAFGFEGDEEGKK-ENPLYRRAAEEMKKKEAEEMLRLLYVGLTRAQSHLL 854

Query: 664  ICKHS---------NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            I                +  K    ++  +++++   +  V+       I   EW   E 
Sbjct: 855  ITGEWRGAVGKEEHGADDGSKKTVPSFMSLLFEAKIEEPEVRFKADQEGIAGVEWRDPER 914

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIK-NDINEPYILNPSTIDTKGKTNLESL 773
                 E    ER  +  +    ++  +      +      P +L+ S +  + +      
Sbjct: 915  IPGITEEELRERVGSGSRGGRWEEAARWYEEVDEGVGGVRPGVLSVSVLAGEWEAER-GG 973

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS---YCTKNAKLWPAKEY--KNLLLSI 828
             +  +    G ++H+ + +   L +  R                 W   +   +     +
Sbjct: 974  EARGRGAVFGSLVHRGMVLWARLGDEGRVREALRGEALAWGGDGEWGEVDRVCEEAAALV 1033

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             R  E+ +    +   +  EV    +     +  ++ G +D + +    + I+E+KT   
Sbjct: 1034 RRWAESEVGREVLGNGAGWEVECVAEW----EGRVLHGVMDAVWVGDGVVRIYEWKT--- 1086

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
               E E     + AQL +Y  I    +P + + C+L
Sbjct: 1087 ---EEEPDVERYRAQLFLYGLIASRVWPGRRVECVL 1119


>gi|91788136|ref|YP_549088.1| UvrD/REP helicase [Polaromonas sp. JS666]
 gi|91697361|gb|ABE44190.1| UvrD/REP helicase [Polaromonas sp. JS666]
          Length = 1095

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 154/928 (16%), Positives = 310/928 (33%), Gaps = 109/928 (11%)

Query: 21   WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
            W     +   + +          PT   K   L+QA     +   FS L    LT K +P
Sbjct: 265  WLAHPARRQTLLEAAKALGRASAPTFSAKGVELEQALTAGDMSAVFSAL----LTDKGSP 320

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
            +K               + ++++QD  ++       ++ +        L + L A +   
Sbjct: 321  RKFGEKIAG-------IDIVRQAQDLALRAVAACQQHEAWTHQQRMARLTRALIAQFTGL 373

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            K++   +D  D+      +L    +S W++ ++D  I H++IDE QDT+ +QW+ + +  
Sbjct: 374  KRERGWVDMNDVERAALVMLGDPVLSGWVQERLDARIKHLMIDEFQDTNPLQWQSLYA-- 431

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
              + +G +   S  ++F VGD KQSIY F  AEP+     +          G    ++  
Sbjct: 432  --WLIGYSGAGSAPSVFLVGDPKQSIYRFRRAEPQVFRAAQA-----FVVEGLGGDLLSC 484

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              + R+   ++  V+   +    A G       T    S RIG  G +    +     ++
Sbjct: 485  DHTRRNAEAVIDTVNAAMATARAADGYEGFREHTTA--SGRIGAAGRLPPIPRQKDTDEA 542

Query: 321  QCNPQQESWTSYF---DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                 +  W         LP+E+  +  A + A  IS  + +           ++  DI+
Sbjct: 543  ALAGPESGWRDSLTTPRELPEETLRTREALQAAAWISGQLASG----------LKPSDIM 592

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VL RKR     +    R L     I     ++  L D   + D++AL   ++S + DLS 
Sbjct: 593  VLSRKRAGLLPLQDELRAL----HIPAQVGEKTDLIDCCEVLDVVALLDALVSPQHDLSL 648

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
               L+SPLF  ++  + ++   + E    +  + +       + Q     +         
Sbjct: 649  ARALRSPLFGVADAGLVQLALLQRELRMPWYQVLQKTELLAPELQGPGAVLTRWKGWLDQ 708

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISE 553
              PHD    I        +F++             L   L   L  +   Y++    +  
Sbjct: 709  LPPHDALQSIYDDGDVLARFVAAAPAAQRGTVLANLRALLGVALDRDGGRYATPYAFVRA 768

Query: 554  LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
            L+          + +++ VR++T+H AKGLE+  V L+DT +   +   +  +   P   
Sbjct: 769  LKAGGTLA--PAAVSNDAVRLLTIHGAKGLEAEAVLLLDTDTLERNADSMGVLVDWPGEA 826

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              P   +++            ++     + + E    LYV +TRA   L+I         
Sbjct: 827  VAPHKFVFLVSESRPPACAEKVLADELLARKREELNALYVALTRARHTLVISSIEPHRET 886

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
             +S  +  Y +V                                     P    E+I   
Sbjct: 887  SESWWQRLYGLVG----------------------------------ELPAPVVESIGPA 912

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                   +  + P    +                        D+     G  +H+LL+  
Sbjct: 913  AASAAKSQIFYLPELPVLP--------DTAIHKVLPDTPEDEDSTVARVGKAMHRLLEWG 964

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                  +       +           +         R+L       A + ++ +      
Sbjct: 965  GPFSAQQLAAVAREF------RLSPAQAARAGGLAERIL-TGEGAWAWNPNAVAWQGNEI 1017

Query: 854  KINCPKKDIIISGRIDQISI-----SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
             +    + + +    D++        + + ++ +YK+      +   +      Q+  Y 
Sbjct: 1018 DLVYQGQPLRL----DRLVQRKDAGHEGHWWVLDYKSAGAPQSQPALLA-----QMQTYR 1068

Query: 909  KILKDSYPNKSLVCLLIYVSEPKVFIIP 936
              ++  YP  ++    +      V  + 
Sbjct: 1069 AAVQQIYPAATVKAAFL-TGSGAVVELS 1095


>gi|299820618|ref|ZP_07052508.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601]
 gi|299818113|gb|EFI85347.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601]
          Length = 730

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 110/575 (19%), Positives = 198/575 (34%), Gaps = 118/575 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   YE+  K+N  LDF+DLI+ T  L ++      +     ++  +I +DE QD
Sbjct: 171 KMVGDVYEAYEKKLKRNQALDFDDLIMVTIQLFER---VPEVLEYYQRKFQYIHVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L   F          + L  VGD  QSIY + GA+   +L  ++   K 
Sbjct: 228 TNHAQYLLVKLLAARF----------KNLCVVGDSDQSIYGWRGADISNILSFEKDYPK- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I L  ++RST  IL   + V     N +                      
Sbjct: 277 -------AAVILLEENYRSTKRILEAANSVIENNSNRKPKK------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        S    ++  +        +       A  +   I  +           
Sbjct: 311 --LW-------TSNSEGKKIFYHKALTEKEE-------AAYVVSKIQELKR--------- 345

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI +L R    + ++            I+          D   IKD++A  R 
Sbjct: 346 ----PYSDIAILYRTNAQSRVLEEYF----MKSNIAYTMVGGTKFYDRKEIKDILAYLRL 397

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN-----CGISKF 481
           + + +DD+S   ++  P        + K+          ++E + +            + 
Sbjct: 398 VSNNDDDISLTRIVNVPKRGVGAGTLDKLNNVATSYDLPLFEVLNRIEMAGISAKVSKQL 457

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
               + +H    +  + S  +    IL     R+   +    E     + +DEFL+ T  
Sbjct: 458 VEFYELVHGFTQMQDYLSVTELVEEILKKTGYREMLENERTIEAQTRLENIDEFLSVTQN 517

Query: 539 NE-QNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            E ++   SL   +++L       +      N+  V +MT+H+AKGLE PVVFLV     
Sbjct: 518 FEKESEDKSLLAFLTDLALVADVDRLEDETENNGSVTLMTLHSAKGLEFPVVFLVGMEEG 577

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H                                       ++S  EE  RL YVG+T
Sbjct: 578 IFPHS----------------------------------RAIYEESEMEEERRLAYVGIT 603

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           RA ++L I    +     + +       + +   +
Sbjct: 604 RAEEELFITSAYSRMLYGRPSSNLESRFIGEIPAD 638


>gi|323341292|ref|ZP_08081537.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644]
 gi|323091286|gb|EFZ33913.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644]
          Length = 756

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 123/781 (15%), Positives = 236/781 (30%), Gaps = 144/781 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + + +  V+  N             + ++   L +          
Sbjct: 41  GAGSGKTRVLTHRVAYLIEHQNVNPWNILAITFTNKAAREMRERIDRLVEYGSEAVWVST 100

Query: 66  FSLLS--------------SFFLTQKFTPQKNII------TQEINKKSPDLKEKLKKSQD 105
           F  L                 F     + QK ++      T  ++ K  D +  L     
Sbjct: 101 FHALCVRILRRDAEKVGFSKAFTIGSPSEQKTLMKHIVADTLNLDTKQYDPRSFLASISS 160

Query: 106 EFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
              ++ +      +           A      Y++  KKN  +DF+DLI+ T  L +   
Sbjct: 161 WKNELIEPEEALLQANAEANPMEVAAARAYQIYQDELKKNQTMDFDDLIMKTIQLFESSP 220

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
            +        ++  +I +DE QDT+  Q+ ++  L + F          R L  VGD  Q
Sbjct: 221 ET---LEFYQRKFRYIHVDEYQDTNEAQYRLVNMLAKGF----------RNLCVVGDADQ 267

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY + GA  + +L  ++          +  ++I+L  ++RST  IL   ++V     N 
Sbjct: 268 SIYGWRGANMENILNFEKDY--------KDATVIKLEQNYRSTKTILQAANEVIEHNLNR 319

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  +                     LW           +  + ++    ++  +      
Sbjct: 320 KDKT---------------------LW-------TENESGDKITYYRADNAADEGY---- 347

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
               +   I   I                 D  +L R    +  +            I  
Sbjct: 348 ---FVIKNIQKEIREKHR---------SYNDFAILYRTNAQSRTLEETF----VKANIPY 391

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHET 463
                    D   I D++A  R + + +D +SF  ++  P        I K+        
Sbjct: 392 KLVGAHRFYDRKEIMDILAYLRLVANPDDSMSFARVVNEPKRGIGATSITKLQNFADMHG 451

Query: 464 ETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            ++YE  +             K       +     + +  +  +    IL     ++   
Sbjct: 452 ISLYEAGKSVDLTGIPVRTAKKITEFCDMLKLFHQVQKQATITEMTEQILSITGYQKALN 511

Query: 519 SRFGNEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANH 569
                E     + L+EFL+ T         E        + +++L             N 
Sbjct: 512 DANTLEAKGRLENLEEFLSVTKEFDENWDPEDEESDPFTDFLADLALVSDQDGVD--QND 569

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + V +MT+H AKGLE PVVFL+     +F                               
Sbjct: 570 DVVTLMTLHAAKGLEFPVVFLIGMEEGIFPLG---------------------------- 601

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVY 686
                    + +S  EE  RL YVG+TRA ++L +    +       +++    +   + 
Sbjct: 602 ------RAAMNESDLEEERRLAYVGITRAEEKLYLTNALSRMLYGRTQQNTASRFIGEIS 655

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
           D+            +   +     A +          +ER           KI  K+   
Sbjct: 656 DALLESANETVRNSSYPFSSGPVAAKKVEKPRKRPGTIERPAQTGAENVGWKIGDKVEHK 715

Query: 747 I 747
            
Sbjct: 716 A 716


>gi|291483101|dbj|BAI84176.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. natto BEST195]
          Length = 739

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 118/616 (19%), Positives = 208/616 (33%), Gaps = 124/616 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A Y++   KN  LDF+DLI+ T  L  +      +     ++  +I +DE QD
Sbjct: 171 QVVSDVYADYQKKLLKNQSLDFDDLIMTTIKLFDR---VPEVLEFYQRKFQYIHVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L E F          + L  VGD  QSIY + GA+   +L  ++     
Sbjct: 228 TNRAQYMLVKQLAERF----------QNLCVVGDSDQSIYRWRGADITNILSFEKDYPN- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   S+I L  ++RST  IL   ++V     N +  +                   
Sbjct: 277 -------ASVILLEQNYRSTKRILRAANEVIKNNSNRKPKN------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW              + S+    +   +        + +A  I  +  +        
Sbjct: 311 --LW-------TENDEGIKISYYRGDNEFGEG-------QFVAGKIHQLHSSGKR----- 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  DI +L R    + +I            ++          D   IKD++A  R 
Sbjct: 350 ----KLSDIAILYRTNAQSRVIEETL----LKAGLNYNIVGGTKFYDRKEIKDILAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481
           + + +DD+SF  ++  P        + KI         + ++ IQ+           +  
Sbjct: 402 VSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAINGLSFFQAIQQVDFIGVSAKAANAL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
               + I  L ++  + S  +    IL   + R+   +    E     + +DEFL+ T  
Sbjct: 462 DSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAEKSIEAQSRLENIDEFLSVTKN 521

Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDT 593
            EQ +   +L   +++L       +           + + +MT+H AKGLE PVVFL+  
Sbjct: 522 FEQKSEDKTLVAFLTDLALIADIDQLDQQEEESGGKDAITLMTLHAAKGLEFPVVFLMGL 581

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF H                                                RL YV
Sbjct: 582 EEGVFPHSRSLMEEAEMEEE----------------------------------RRLAYV 607

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           G+TRA  +L +      +   ++N       +         +    L N   K E  A  
Sbjct: 608 GITRAEQELYLTNAKMRTLFGRTNMNPESRFIA-------EIPDDLLENLNEKKETRATS 660

Query: 714 WSTHHPENTPLEREET 729
                P   P+ R  +
Sbjct: 661 ARKMQPRRGPVSRPVS 676


>gi|239625785|ref|ZP_04668816.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520015|gb|EEQ59881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 854

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 116/730 (15%), Positives = 237/730 (32%), Gaps = 145/730 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L            
Sbjct: 27  GAGSGKTRVLTHRVAYLIDEKDVNPWNILAITFTNKAAGEMRERVDQLVGFGAESIWVST 86

Query: 66  FSL--------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEK-----LKKS 103
           F                 ++ F       QK ++    + ++  +   KE+     +  +
Sbjct: 87  FHSTCVRILRRHIECLGYTTSFSIYDSDDQKTLMKQVFKSLDVDTKQFKERSVLGVISSA 146

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           +D+ I   +                    +   Y++  KKN  LDF+DLI+ T +L +  
Sbjct: 147 KDKLIMPEEFLLNAGQDFRQKK----VGEIYREYQKQLKKNNALDFDDLIVKTVELFQNN 202

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              A +     +   +I++DE QDT+  Q++++  L + +          R L  VGD+ 
Sbjct: 203 ---AEVLNYYQERFKYIMVDEYQDTNQAQFKLVNLLADKY----------RNLCVVGDDD 249

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY F GA+ + +L  +               +I+L  ++RST +IL   + V      
Sbjct: 250 QSIYRFRGADIENILSFESAFP--------GAKVIKLEENYRSTQNILNAANGVIRHNRG 301

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            +  +                     LW        +        +  +  +  +     
Sbjct: 302 RKDKT---------------------LW-------TANGEGNLIRFKQFDMARDE----- 328

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A  +A  I +                  +D  VL R    + LI          Y + 
Sbjct: 329 --ADYVARQIRD-------------SEFAYQDQAVLYRTNAQSRLIEER----CIFYNVP 369

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                         IKD++A  + I +  DDL+ + ++  P        + K+       
Sbjct: 370 YRLVGGVNFYQRREIKDILAYLKTIANGVDDLAVLRIINVPKRGIGATTMGKVTAFASEH 429

Query: 463 TETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQ 515
             ++Y  +++            K    +  +      A+    S  D    I+     +Q
Sbjct: 430 GMSLYGALKEARQVPGLGKAAEKILKFVGQMESFRARAESEDFSIRDLIEGIMDETGYQQ 489

Query: 516 QFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNE 571
           +  +    E     + ++E +N  +  E+ + + +L E + ++             + + 
Sbjct: 490 ELEAEGEIEAQTRLENIEELVNKAVSYEEDSEHPTLDEFLEQVALVADIDSMD--ESEDR 547

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H+AKGLE P V+LV     +F                                 
Sbjct: 548 VTLMTLHSAKGLEFPKVYLVGMEDGLFPSMMS---------------------------- 579

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               I    ++  EE  RL YVG+TRA  +L++          ++        + +    
Sbjct: 580 ----INSDDRTDLEEERRLCYVGITRAKKELVLTSARQRMVNGETRYCKPSRFLEEVPAE 635

Query: 692 DERVKKIKLT 701
               ++++  
Sbjct: 636 LLDEERLEPV 645


>gi|296330119|ref|ZP_06872601.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673364|ref|YP_003865036.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152708|gb|EFG93575.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411608|gb|ADM36727.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 739

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 118/616 (19%), Positives = 208/616 (33%), Gaps = 124/616 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y++   KN  LDF+DLI+ T  L  +      +     ++  +I +DE QD
Sbjct: 171 QVVSDVYTDYQKKLLKNQSLDFDDLIMTTIKLFDR---VPEVLEFYQRKFQYIHVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L E F          + L  VGD  QSIY + GA+   +L  ++     
Sbjct: 228 TNRAQYMLVKQLAERF----------QNLCVVGDSDQSIYRWRGADITNILSFEKDYPN- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   S+I L  ++RST  IL   ++V     N +  +                   
Sbjct: 277 -------ASVILLEQNYRSTKRILRAANEVIKNNSNRKPKN------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW              + S+    +   +        + +A  I  +  + T      
Sbjct: 311 --LW-------TENDEGIKISYYRGDNEFGEG-------QFVAGKIHQLHSSGTR----- 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  DI +L R    + +I            ++          D   IKD++A  R 
Sbjct: 350 ----KLSDIAILYRTNAQSRVIEETL----LKAGLNYNIVGGTKFYDRKEIKDILAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481
           + + +DD+SF  ++  P        + KI         + ++ IQ+           +  
Sbjct: 402 VSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGLSFFQAIQQVDFIGVSAKAANAL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
               + I  L ++  + S  +    IL   + R+   +    E     + +DEFL+ T  
Sbjct: 462 DSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAEKSIEAQSRLENIDEFLSVTKN 521

Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDT 593
            EQ +   +L   +++L       +           + + +MT+H AKGLE PVVFL+  
Sbjct: 522 FEQKSEDKTLVAFLTDLALIADIDQLDQQEEESGGKDAITLMTLHAAKGLEFPVVFLMGL 581

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF H                                                RL YV
Sbjct: 582 EEGVFPHSRSLMEEAEMEEE----------------------------------RRLAYV 607

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           G+TRA  +L +      +   ++N       +         +    L N   K E  A  
Sbjct: 608 GITRAEQELYLTNAKMRTLFGRTNMNPESRFIA-------EIPDDLLENLNEKKETRAPS 660

Query: 714 WSTHHPENTPLEREET 729
                P   P+ R  +
Sbjct: 661 ARKMQPRRGPVSRPVS 676


>gi|314936814|ref|ZP_07844161.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp.
            hominis C80]
 gi|313655433|gb|EFS19178.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp.
            hominis C80]
          Length = 1224

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 141/928 (15%), Positives = 294/928 (31%), Gaps = 131/928 (14%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                  +++D              + + K +   + + K+   VLDF D       +L  
Sbjct: 324  LMRSVDELKDDMKQL--APRIKYLVQIIKDIINDFAKKKRSRNVLDFADYEHFALQILTD 381

Query: 163  -RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                 + I  +   +   ILIDE QDT+ +Q  +I ++                LF VGD
Sbjct: 382  ENGTPSTIAKEYRHQFEEILIDEYQDTNQVQEAIISTIKR-------GDELDGNLFMVGD 434

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI- 280
             KQSIY F  A+P   + +     K     G     I+L  +FRS  ++L+  + +F   
Sbjct: 435  VKQSIYKFRQADPTLFMSKYHRFTKEGQQTGL---RIDLSNNFRSRKEVLSTTNYLFDHM 491

Query: 281  -PENAQGLSEDSTTTIRHRSSR-IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
              E    ++ D+   +   +     +   ++L   + S+++                   
Sbjct: 492  MDEAVGEINYDADARLYFGAHYYPEKAMPLELHALIKSENED----------------ID 535

Query: 339  ESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                   A  +   + +++    ++       R    KDI++L R   +        + +
Sbjct: 536  LDRQEQEAYYVVEQVKHILDNKLVYDAKNNAYRKATYKDIVILERGMSNARR----LQKV 591

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              D  I    N +    +   ++ +++  R I +   D+  V +++S ++ F+ED++ +I
Sbjct: 592  FKDNNIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVIYQFTEDELAEI 651

Query: 457  CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                   +  Y+ I  +           +K +  I+ IH      Q    +         
Sbjct: 652  RVVSSNDDYFYQSILHYIKYDQANAQLVNKLRRFIEDIHLYQDYGQTHPVYQLIDKFYND 711

Query: 511  KKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN- 568
                Q F    G +     L    N  +  E +++  L + I  +++     K     N 
Sbjct: 712  HYVIQYFSGLIGGKGRRANLFGLFNKAIEFENSTFRGLYQFIRFIDELIERKKDFGEENV 771

Query: 569  ----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI---- 620
                 N VR+MT+H++KGLE P V               K + +                
Sbjct: 772  IGPNDNVVRMMTIHSSKGLEFPYVIYSGLSKNFNKEDIRKPLVLNQKYGLGMEYYDLTNN 831

Query: 621  -----------------------------------------------WIPQSKSRNNIVS 633
                                                              +   R  I +
Sbjct: 832  ISYPSLSSVVVKSLTEKELISEEMRLMYVALTRAKEQLILIGTVDKEEKLRKYERLPISN 891

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
             LI   K+ + E    L+Y  + +   Q I   +   ++  + +      +     H DE
Sbjct: 892  QLIALHKRLSVERPFNLVYSILAKHLSQSITSDYQFETSINQLDDSLKPYVDLKIIHFDE 951

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENT-----------PLEREETIKQLMDEQKIPKK 742
                     ++++      E + ++ E+            P  +           ++ ++
Sbjct: 952  LSLIGDSNETLHRTINDIEEEAPNNKESEQQMIHQLTFKYPFIKNTQKPSKQSVSELKRQ 1011

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
            L +       +          T  +          +    G ++H ++Q +    +   +
Sbjct: 1012 LETKEDGTSYDRVRQYRIGAYTYERPKFLRQERKRKANEIGTLMHTVMQHLPFREQRLTE 1071

Query: 803  NFITSYCT--KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSG----- 853
              +  Y     +  +      K++    I   + + +       D  Y E+         
Sbjct: 1072 TELDDYIHMLIDQHIIEEDAKKDIQFERIMEFIRSDLYMKIAQADEVYRELPFVVNQARV 1131

Query: 854  -KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE---HIPYTHIAQL 904
             +I    +D+ II G ID I I     +  +YKT          + E    +   +  Q+
Sbjct: 1132 DEIPDLDEDVSIIQGMIDLIFIKDNQYYFVDYKTDAFNRRRGMTDQEIGIQLRDKYKIQM 1191

Query: 905  SIYEKILKDSYPNKSLVCLLIYVSEPKV 932
              Y+  L+    NK +   L +    ++
Sbjct: 1192 KYYKNTLETIL-NKRVHGYLYFFQFGEM 1218


>gi|297528689|ref|YP_003669964.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3]
 gi|297251941|gb|ADI25387.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3]
          Length = 724

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 124/692 (17%), Positives = 230/692 (33%), Gaps = 137/692 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV+  N             + ++ Q L   +        
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVQALLGGAAEDVWIST 91

Query: 66  FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +  +  + I+ K  +L+  L      
Sbjct: 92  FHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKDKNIDPKKFELRTILATISGA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +       K  +++     +   +   Y++   +N  LDF+DLI+ T  L  +    
Sbjct: 152 KNDLLTPEQFAK--RASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTTIHLFDR---V 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +      +  +I IDE QDT+  Q+ +++ L E F          + + AVGD  QSI
Sbjct: 207 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +R              +I L  ++RST  IL   ++V +   N + 
Sbjct: 257 YRWRGADIRNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIAHNVNRKP 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW             +   +    + + +       A
Sbjct: 309 KR---------------------LW-------TENPEGKPIVYYEAMNEVDE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +A  I   + +            + +D  VL R    + +I  +         I    
Sbjct: 334 QFVARRIQEAVESGER---------RYRDFAVLYRTNAQSRVIEEMF----LKANIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I + +DDLS + ++  P        I K+         +
Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 440

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++E + +                    + +   + ++    +    +L     R+   + 
Sbjct: 441 LFEALGELEMIGFSTKTAGALAAFRGQLEQWTQLQEYVPVTELVEEVLDQSGYREMLKAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573
              E     + LDEFL+ T   E  +   SL   +++L              +A  + V 
Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLVAFLTDLALISDLDELNGTDQAAEGDAVV 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MT+H AKGLE PVVFL+     +F H                                 
Sbjct: 561 FMTLHAAKGLEFPVVFLIGMEEGIFPH--------------------------------- 587

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
            L     +   EE  RL YVG+TRA ++L++ 
Sbjct: 588 -LRSLENEDEMEEERRLAYVGITRAEEELVLT 618


>gi|325662111|ref|ZP_08150729.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471560|gb|EGC74780.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 741

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 115/604 (19%), Positives = 193/604 (31%), Gaps = 111/604 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YE   K N  LDF+DL++ T  L + +     I     +   +I++DE QDT+ 
Sbjct: 170 AEAYKEYERQLKANNALDFDDLLVKTVQLFQTQPE---ILEYYQERFRYIMVDEYQDTNT 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+++I  L   +          + L  VGD+ QSIY F GA  + +L  ++  +     
Sbjct: 227 VQFKLISLLAAKY----------KNLCVVGDDDQSIYKFRGANIQNILSFEKEFEH---- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST+ IL   + V       +  S                     L
Sbjct: 273 ----TKVIKLEQNYRSTSTILDAANAVIKNNVGRKAKS---------------------L 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W             ++  +  +  +  +       A  I   I   +             
Sbjct: 308 W-------TENGEGEKIQFRQFDTAYDE-------AEYIVGDIRERVDNG---------K 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VL R    + L             I               IKDL+A  + I +
Sbjct: 345 AAYCDHAVLYRTNAQSRLFEEKM----ITANIPYKIVGGVNFYARKEIKDLLAYLKTIDN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFA-----NCGISKFQHV 484
            +DDL+   ++  P        + +I     +   + YE +            ISK +  
Sbjct: 401 GKDDLAVRRIINVPKRGIGLTTVNRITEAAQQRGISFYEALCSADLVPGLGRSISKLESF 460

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
              I      A+  S  +    IL      ++  +    E    +  +DEFLN     E+
Sbjct: 461 AAMIEYFRKEAEHLSITELMKEILTETGYVEELKAEGEEEAEVRLQNIDEFLNKIAAYEE 520

Query: 542 NSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    L  L   LE+              + V +MT+H+AKGLE P V+L      +F  
Sbjct: 521 SCEEELPTLSGFLEEVALVADIDSLDEESDYVVLMTLHSAKGLEFPYVYLAGMEDGIFPS 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              I     +  EE  RL YVG+TRA  
Sbjct: 581 YMT--------------------------------ITADDPTELEEERRLCYVGITRAKK 608

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L +          ++        + +         KI     +   +  AY  +    +
Sbjct: 609 ELAMTCARRRMIRGETQYNKMSRFLKEVPPQLLSTGKIVEKEELELPKQNAYVQAKQSFQ 668

Query: 721 NTPL 724
             P 
Sbjct: 669 AKPF 672


>gi|228474316|ref|ZP_04059051.1| recombination helicase AddA [Staphylococcus hominis SK119]
 gi|228271675|gb|EEK13022.1| recombination helicase AddA [Staphylococcus hominis SK119]
          Length = 1221

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 142/928 (15%), Positives = 294/928 (31%), Gaps = 131/928 (14%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                  +++D              + + K +   + + K+   VLDF D       +L  
Sbjct: 321  LMRSVDELKDDMKQL--APRIKYLVQIIKDIINDFAKKKRSRNVLDFADYEHFALQILTD 378

Query: 163  -RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                 + I  +   +   ILIDE QDT+ +Q  +I ++                LF VGD
Sbjct: 379  ENGTPSTIAKEYRHQFEEILIDEYQDTNQVQEAIISTIKR-------GDELDGNLFMVGD 431

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI- 280
             KQSIY F  A+P   + +     K     G     I+L  +FRS  ++L+  + +F   
Sbjct: 432  VKQSIYKFRQADPTLFMSKYHRFTKEGQQTGL---RIDLSNNFRSRKEVLSTTNYLFDHM 488

Query: 281  -PENAQGLSEDSTTTIRHRSSR-IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
              E    ++ D+   +   +     +   ++L   + S+++                   
Sbjct: 489  MDEAVGEINYDADARLYFGAHYYPEKAMPLELHALIKSENEDTDL--------------- 533

Query: 339  ESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                   A  +   + +++    ++       R    KDI++L R   +        + +
Sbjct: 534  -DRQEQEAYYVVEQVKHILDNKLVYDAKNNAYRKATYKDIVILERGMSNARR----LQKV 588

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              D  I    N +    +   ++ +++  R I +   D+  V +++S ++ F+ED++ +I
Sbjct: 589  FKDNNIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVIYQFTEDELAEI 648

Query: 457  CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                   +  Y+ I  +           +K +  I+ IH      Q    +         
Sbjct: 649  RVVSSNDDYFYQSILHYIKYDQANAQLVNKLRRFIEDIHLYQDYGQTHPVYQLIDKFYND 708

Query: 511  KKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN- 568
                Q F    G +     L    N  +  E +++  L + I  +++     K     N 
Sbjct: 709  HYVIQYFSGLIGGKGRRANLFGLFNKAIEFENSTFRGLYQFIRFIDELIERKKDFGEENV 768

Query: 569  ----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI---- 620
                 N VR+MT+H++KGLE P V               K + +                
Sbjct: 769  IGPNDNVVRMMTIHSSKGLEFPYVIYSGLSKNFNKEDIRKPLVLNQKYGLGMEYYDLTDN 828

Query: 621  -----------------------------------------------WIPQSKSRNNIVS 633
                                                              +   R  I +
Sbjct: 829  ISYPSLSSVVVKSLTEKELISEEMRLMYVALTRAKEQLILIGTVDKEEKLRKYERLPISN 888

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
             LI   K+ + E    L+Y  + +   Q I   +   ++  + +      +     H DE
Sbjct: 889  QLIALHKRLSVERPFNLVYSILAKHLSQSITSDYQFETSINQLDDSLKPYVDLKIIHFDE 948

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENT-----------PLEREETIKQLMDEQKIPKK 742
                     ++++      E + ++ EN            P  +           ++ ++
Sbjct: 949  LSLISDSNETLHRTINDIEEEAPNNKENEQQMIHQLTFKYPFIKNTQKPSKQSVSELKRQ 1008

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
            L +       +          T  +          +    G ++H ++Q +    +   +
Sbjct: 1009 LETKEDGTSYDRVRQYRIGAYTYERPKFLRQERKRKANEIGTLMHTVMQHLPFREQRLTE 1068

Query: 803  NFITSYCT--KNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSG----- 853
              +  Y     +  +      K++    I   + + +       D  Y E+         
Sbjct: 1069 TELDDYIHMLIDQHIIEEDAKKDIQFERIMEFIRSDLYMKIAQADEVYRELPFVVNQARV 1128

Query: 854  -KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE---HIPYTHIAQL 904
             +I    +D+ II G ID I I     +  +YKT          + E    +   +  Q+
Sbjct: 1129 DEIPDLDEDVSIIQGMIDLIFIKDNQYYFVDYKTDAFNRRRGMTDQEIGIQLRDKYKIQM 1188

Query: 905  SIYEKILKDSYPNKSLVCLLIYVSEPKV 932
              Y+  L+    NK +   L +    ++
Sbjct: 1189 KYYKNTLETIL-NKRVNGYLYFFQFGEM 1215


>gi|258512041|ref|YP_003185475.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius DSM 446]
 gi|257478767|gb|ACV59086.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius DSM 446]
          Length = 1240

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 149/1014 (14%), Positives = 326/1014 (32%), Gaps = 133/1014 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            GL+  E      K +       +S++ + ++L    G P    +   L            
Sbjct: 237  GLAELERMRAPEK-VVAGALSILSNLKEALALLSTPGAPLDPDRLAPLV----------- 284

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
                 S  L++++ P K    +  N+    L++ L++ +          +   M      
Sbjct: 285  --HWESARLSKEYEPFKKWRGKA-NEAMKLLRKVLRRGRAALEA-----DVRAMRPHIEV 336

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               +A+   A  +  + +   L F DL    ++LL K +    +R  +     ++ +DE 
Sbjct: 337  LTGVARDTLARAQSRRLEENRLSFSDLEHLAHELLAKDEG---VRAALHARYRYVFVDEY 393

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDTS IQ  ++ ++             P  LF VGD KQSIY F  AEP   L   R   
Sbjct: 394  QDTSPIQDAIVDAVA-----------PPGGLFLVGDVKQSIYGFRMAEPGLFLARYRRYA 442

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIG 303
            ++          I+L  ++RS + I+  V+ +F    +A   G        ++  ++   
Sbjct: 443  EK-----DGGEAIDLSANYRSRSGIVRFVNYLFGQLFHADVAGFDYADGHEMKPEAAYPD 497

Query: 304  QVGTVQLWEQ---------VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              G     +               +++   + ++     D         I A  +A  I+
Sbjct: 498  DDGGPCPVKIKLFFSGDAGNDRVEETEEPERADAKGEDEDEQVAREKLEIEAMWVADQIA 557

Query: 355  NMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
              +       +      R ++ +D+ +L+R   +          +     I  V      
Sbjct: 558  RALERQERVYDRAAKAYRPLRYQDVAILLRAGGENLN---TVVQVLASRGIPAVARSSSG 614

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
                + I+  ++L   + +  D L+    LKSP    S+DD+             +   +
Sbjct: 615  FFRAMEIRWAVSLLTALDNPLDSLALAAALKSPFVGLSDDDLAAARIACPRGPLWHAVRE 674

Query: 472  KFANCG--ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDV 528
               +        +  ++ +     +A   +P D    I    +          G      
Sbjct: 675  AARDTEGARDALRLAVERLERWRGLAHTLAPGDLLREIAREVEIDLYLRAMPRGLARAAN 734

Query: 529  LDEFLNFTLRNE--QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L++ +     +            ++  LE+    +  AH A+ + V +MT+H +KGLE P
Sbjct: 735  LEQLIRLAQSHAPHAGDLYRFLAMVRGLEEADVDLGHAHGASADSVAVMTIHGSKGLEFP 794

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
             V+++  G + F H   + + +   L     +         R      + +   ++++ E
Sbjct: 795  HVYVLCLG-RQFPHN-KRTLALHRRLGIGATMCDVQTGVHWRTVPSIAVDQANLEASRAE 852

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNE--------------------KKSNQRTWYDMVY 686
              R+LYV +TRA ++L++  H+    +                    K ++  +W     
Sbjct: 853  EARVLYVALTRAKERLVLVGHAGKVAKLADAAEGHDDEGRLTPEAFLKGNSYASWILPAL 912

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN-----------------TPLEREET 729
                +   ++K          +     +      +                  PL   E 
Sbjct: 913  MRHPDGAWLRKEAGDARAALLDAPGVRFELEVEVDGRPQGQESGEPRSSLFKAPLPPAEE 972

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPS------------------------TIDTK 765
            +++ +                 +E      S                           + 
Sbjct: 973  VERELRRLWQGPAWRYRAVRVASEQRGSRVSLPSKLTATDIRRLFAERELRARGRHAGSV 1032

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
             +       S      RG+  H  +Q     P     +   +      +    +   + L
Sbjct: 1033 LEDPAFVRQSGASPRERGVAFHAFMQRAPMQPYANPDDVRRAAQALLEQGLLDERMASAL 1092

Query: 826  --LSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKD----IIISGRIDQISISQQNI 878
                +     +P+    ++    Y E     +++    D    +++ G ID +    +  
Sbjct: 1093 DPDDVLAFFASPLGRRVLAAGEVYREQPFFYRLDVRAGDAQAPVVVQGVIDCLIRDARGY 1152

Query: 879  FIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
             + +YKT       +++ +   +  Q++ Y   ++++   +     L +V   +
Sbjct: 1153 AVIDYKTDQVRDASDLDRLVRAYEPQVATYAAAVREAVGTEP-EVYLYFVHARE 1205


>gi|154483242|ref|ZP_02025690.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC
           27560]
 gi|149736050|gb|EDM51936.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC
           27560]
          Length = 780

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 111/574 (19%), Positives = 196/574 (34%), Gaps = 82/574 (14%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           QK   +  I    ++ K       L K  D   K+       +M +S    L L   +  
Sbjct: 120 QKKLLKDVIKNLNLDPKMYKENAVLGKISDFKNKLVTTGEVAQMAQSDFKLLNL-SKIYN 178

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
           +Y+EA KKN  LDF+DLI+ T  L +K      +     + + +I++DE QDT+  Q+  
Sbjct: 179 NYQEALKKNNALDFDDLIMKTVHLFRK---CPEVLESYQERLKYIMVDEYQDTNGAQFAF 235

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I+ L   +          + L  VGD+ QSIY F GA+   +L+ ++             
Sbjct: 236 IKLLASKY----------QNLCVVGDDDQSIYKFRGADISNILQFEKNFNN--------A 277

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +++L  ++RST  IL   ++V    +  +  +                     LW    
Sbjct: 278 RVVKLEQNYRSTKTILDAANEVIHNNKGRKDKT---------------------LW---- 312

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    ++       D+  +       A  +A TI   +                 D
Sbjct: 313 ---SDNEQGEKIDLYQAEDAYAE-------ADMVASTIKENVDFGR---------ADYSD 353

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    +  +            I               IKD++A  R I +  DD+
Sbjct: 354 YAILYRTNAQSRALEEKL----LLRNIPYKIIGGQNFYQRKEIKDVLAYLRIICNATDDI 409

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQHVIKYIH 489
           +   ++  P        + K     R     +YE + +  N        +K +     I 
Sbjct: 410 AVERIINVPKRGIGATTVTKAKDFARAYGFNLYESLLEVENIPGLERAATKVRKFTDLIE 469

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQN-SYS 545
                 Q  S  +    +L       +  +   +E     + +DE +      E+N    
Sbjct: 470 NFKDQQQSMSLKELVNEVLNETGYVAELAAENTDEANGRIENIDELITKVTEYEENTDNP 529

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           SL E + E+             + + V +MTVH+AKGLE P VFL      +F       
Sbjct: 530 SLAEFLEEVALVSEIDN--LDEDSSYVVLMTVHSAKGLEFPNVFLCGMEDGLFPGYMSIM 587

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
                 L ++  +         ++  +S   + +
Sbjct: 588 SDDPEELEEERRLCYVAITRAMKHLTISYAKRRM 621


>gi|240139167|ref|YP_002963642.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
 gi|240009139|gb|ACS40365.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
          Length = 1124

 Score =  313 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 161/976 (16%), Positives = 317/976 (32%), Gaps = 98/976 (10%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG +  +++    +          +++  + +++           A     A  T 
Sbjct: 211  LVRAFG-ASVQAFADFQRSCGVSEGETAANVRAFQAMAARL---PDTGVADADLVAILTA 266

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF----IKIRDRFNT 116
              E         F   +    K     ++        ++L+ S +       +   R   
Sbjct: 267  AAEASLCKADGDFAKYRGGKGKWAGAAKLVGLPKTEADRLQASAERLHVACCEAWRRLKA 326

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                +     +   + +   Y+  K+   +LDF+DLI     LL+  +    +R  + + 
Sbjct: 327  NAASELLARLVGTVRTVLDRYQARKRDGALLDFDDLIAAAATLLRAHET---VRQALGRR 383

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----TLFAVGDEKQSIYSFHG 231
              H+L+DE QDT  IQ E++  L  +   G     + R      LF VGD KQ+IY F G
Sbjct: 384  YRHVLVDEFQDTDPIQTEILWRLCGELPDGAADAWTERVLRPGALFLVGDPKQAIYRFRG 443

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A+    +R +     R+ +      ++ +  +FRS   IL  VD+ F    N  G    +
Sbjct: 444  ADVSTYVRARDRILARSPDD-----VLAISTNFRSCRSILAYVDERFGDILNGVGQPGFA 498

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                 H            L     +    +                        A  +A 
Sbjct: 499  ALDAFH-PDHDRGPCIAALDVPAGADGAKRTAEALRD---------------AEAEAVAD 542

Query: 352  TISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              + +IG   +       R ++A DI +L     D                I V      
Sbjct: 543  LCARLIGHQLVTCKRAGTRTLRAGDIALLAPSGSDLWRYEEALEA----RGIPVSTQAGK 598

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI------CTQRHETE 464
                   + DL+AL R +    D L+   +L+ P    +++++  +        +R E+ 
Sbjct: 599  GFFRRQEVHDLIALTRVLADPRDTLALGALLRGPAVGLTDEELLDLVDGLPRDPERPESV 658

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
                     A       + V++ +  L   A   +PHD  +  + A   R     R    
Sbjct: 659  PRLRLHVDVAQVNHPVARPVLERLQALAKRALGTTPHDILSQAVDALMLRPVVQQRHDGH 718

Query: 525  VID---VLDEFLNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                   +D FL  +         +    + +  E    T++    A    V ++T+H +
Sbjct: 719  AERALANIDLFLEMSRPFAVRGLRAFAGAMRAAWEGRTRTVEGRPDAQEAAVSLLTMHAS 778

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE PVV  ++T ++  +        +  +L D     ++ P    R     + ++  K
Sbjct: 779  KGLEWPVVIPINTTTRTKA--------VSGALVDRASNCLYCPVFGVRPAGYDEALEAEK 830

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            +    E  RL YV  TRA + L++ + +                    +     +    L
Sbjct: 831  REVGNERVRLWYVAATRARETLVLTRFAEPGASTS-------------WSAVVDLGLADL 877

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-NP 759
             +   +   +          N         +     ++   +   P + D   P     P
Sbjct: 878  PSIDVERLPVGTPAVAPEFANGQTREIFAAEAAAVARQRRLRWIVPSRGDAAGPETSGAP 937

Query: 760  STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS--YCTKNAKLWP 817
              ++               +  RG++IHKLL+ I T    +  +         +   L  
Sbjct: 938  GLVEGGTDGGRGPGGRPTGSRERGILIHKLLEEILTGEASEGDDLGRRAGLLARQLGLGT 997

Query: 818  ------AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
                    +   +  S+TR L  P +         +E+ V G  +   +D   +G +D I
Sbjct: 998  GDAAGAEVDLAEVAASVTRALGLPEIAGI-RERLQAELPVFGFESLADEDQATAGVVDAI 1056

Query: 872  SIS----QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            +           + ++K+        E +   +  Q++ Y               L+++V
Sbjct: 1057 ACDAVGKPD--IVVDWKSDVDP---AEAVLADYRRQVARYLLTTGARL------GLIVFV 1105

Query: 928  SEPKVFIIPQNKLNKA 943
            +  +V  + +  +   
Sbjct: 1106 TSGRVVPVTRAAMADV 1121


>gi|319647077|ref|ZP_08001303.1| PcrA protein [Bacillus sp. BT1B_CT2]
 gi|317390901|gb|EFV71702.1| PcrA protein [Bacillus sp. BT1B_CT2]
          Length = 725

 Score =  313 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 119/720 (16%), Positives = 233/720 (32%), Gaps = 134/720 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++ +++            
Sbjct: 18  GAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERVESILGPGADDIWIST 77

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110
           F  +    L +            I   S  L       ++                    
Sbjct: 78  FHSMCVRILRRDIDRIGINRNFSILDTSDQLSVIKGILKERNIDPKKFDPRSILGSISSA 137

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++     + ++ T       +   +   Y++  +KN  LDF+DLI+ T  L  +      
Sbjct: 138 KNELIAPEEYEKTAGGFFEQVVSDVYKDYQKKLRKNQSLDFDDLIMTTIVLFDR---VPE 194

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ +++ + + F          + +  VGD  QSIY 
Sbjct: 195 VLEYYQRKFQYIHVDEYQDTNRAQYLLVKKMAQRF----------QNICVVGDSDQSIYR 244

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++             S+I L  ++RST  IL   ++V     N +  +
Sbjct: 245 WRGADIANILSFEKDYPN--------ASVILLEQNYRSTKRILNAANEVIQNNSNRKPKN 296

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + S+    +   +        + 
Sbjct: 297 ---------------------LW-------TENDEGAKISYFRGDNEFGEG-------QF 321

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I  ++G+               DI +L R    + +I            I+     
Sbjct: 322 VAGKIRELVGSGKR---------SFSDIAILYRTNAQSRVIEETL----MKANINYNIVG 368

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKD++A  R + + +DD+SF  ++  P        + KI         +++
Sbjct: 369 GTKFYDRKEIKDILAYLRLVANPDDDISFARIVNVPKRGVGATSVDKIAAYADMNGMSLF 428

Query: 468 EY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E          +    +      + I  L ++ ++ S  +    IL   + R+   +   
Sbjct: 429 EALGQVDFIGLSARAANALDEFRQTIENLTNMQEYLSVTELTEEILEKTEYREMLKAEKS 488

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANH----NEVRI 574
            E     + +DEFL+ T   E Q+   SL   +++L       +           + V +
Sbjct: 489 LEAQSRLENIDEFLSVTKNFEQQSEDKSLVAFLTDLALIADIDQLDQKEEETGNQDAVIL 548

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE PVVFL+     VF H                                  
Sbjct: 549 MTLHAAKGLEFPVVFLMGLEEGVFPHSRSLMEEAEMEEE--------------------- 587

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                         RL YVG+TRA ++L +      +   ++N       + +       
Sbjct: 588 -------------RRLAYVGITRAEEELYLTNARMRTLFGRTNMNPESRFIAEIPEELLD 634


>gi|284928732|ref|YP_003421254.1| Rep family ATP-dependent DNA helicase [cyanobacterium UCYN-A]
 gi|284809191|gb|ADB94896.1| ATP-dependent DNA helicase, Rep family [cyanobacterium UCYN-A]
          Length = 772

 Score =  313 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 112/556 (20%), Positives = 191/556 (34%), Gaps = 99/556 (17%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+    +N  LDF+DLI+    L +       +      +  HIL+DE QD
Sbjct: 206 RVIAEIYDEYQTQLAENNALDFDDLILIPVCLFQDN---KSVLGYWHSQFKHILVDEYQD 262

Query: 188 TSLIQWEVIRSLTEDF-FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+ IQ+ +I+ LT +      + +   R++F VGD  QSIYSF  A+   +L  +     
Sbjct: 263 TNRIQYTLIQLLTTNGKINKNSWNWKNRSIFVVGDADQSIYSFRMADFTILLNFQAEFGD 322

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
              +   K ++I+L  ++RST +IL   + +          +  +T              
Sbjct: 323 GLPDDDTK-TMIKLENNYRSTENILVAANNLIYKNSQRIDKTLKATR------------- 368

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             ++       D   +       A  +   I  +I         
Sbjct: 369 ---------------GKGEKIYCYKADDEHIE-------AEFVISKIQELIS-------- 398

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +  KDI  L R    +     +         I       F   D   IKD +A  R
Sbjct: 399 INSELSWKDIAFLYRVNSQSRPFEDIL----VRKSIPYTIVGGFKFYDRQEIKDSVAYLR 454

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGIS 479
            I++  D +S + ++ SP     +  I  +     E   +++E       ++        
Sbjct: 455 LIVNPYDTVSLLRVINSPRRGIGKTTIDLLLKASQELKTSLWEILIDETSVKTLTGKSSK 514

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
              + +  I +L   +      D F  ++           +   E    ++ L E  N  
Sbjct: 515 AVLNFVHMIKKLQEKSTELVSTDIFNQVMQKSGYIDDLKRKETEESDNRLENLQELYNAM 574

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            +  E+N+  SLQ  ++                +N+V +MT+H+AKGLE PVVFLV    
Sbjct: 575 NQYREENNDPSLQGYLTNASLASDLDN--LENENNKVSLMTLHSAKGLEFPVVFLVGLEQ 632

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
               H       +                                  + EE  RL YVG+
Sbjct: 633 GTLPHIRSLNNPL----------------------------------SLEEERRLCYVGI 658

Query: 656 TRASDQLIICKHSNTS 671
           TRA ++L I      S
Sbjct: 659 TRAQEKLFITYARERS 674


>gi|260590017|ref|ZP_05855930.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583]
 gi|331084334|ref|ZP_08333438.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539529|gb|EEX20098.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583]
 gi|330401598|gb|EGG81179.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 736

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 110/670 (16%), Positives = 220/670 (32%), Gaps = 119/670 (17%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
           +              +       L +    + NI T+   +    +   +  ++DE I  
Sbjct: 96  RRFIDRLGYDTNFTIYDADDQKTLMKDICKRLNIDTKVYKE--KAILAAISSAKDELIS- 152

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            + +    M   +   + LA      Y++  KKN  LDF+DLI+ T +L +       + 
Sbjct: 153 PEEYELQNMADFSKKKVILA---YKEYQKELKKNNALDFDDLIVKTVELFQS---CPDVL 206

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               +   +I++DE QDT+  Q++ +  L   +          + L  VGD+ QSIY F 
Sbjct: 207 EYFQERFRYIMVDEYQDTNTAQFKFVSLLASKY----------QNLCVVGDDDQSIYKFR 256

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +L  +++             +I L  ++RST +IL   ++V       +  +  
Sbjct: 257 GANIGNILGFEKVFSN--------AKVIRLEQNYRSTQNILNAANQVIQNNMERKRKT-- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW             ++  +  + ++  +       A  + 
Sbjct: 307 -------------------LW-------TENEEGEKLHFRQFMNAYEE-------AEYVV 333

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             IS  +              + +D  VL R    + L             I        
Sbjct: 334 GEISKKVREGDG---------EYRDFAVLYRTNAQSRLFEEKL----LMANIPYKLVGGV 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469
                  IKDL+A  + + + +DDL+   ++  P        + ++           Y+ 
Sbjct: 381 NFYARKEIKDLLAYLKTVDNAKDDLAVRRIINVPKRGIGATTLSRVQDYASERGIGFYDA 440

Query: 470 IQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
           +++            K +  + +I  L    +F SP +    I+ +    ++  +   +E
Sbjct: 441 LREAEQIPSIGRAAVKVEPFVTFIQTLRSKQEFLSPSELLKDIIESTGYVEELRNEGTDE 500

Query: 525 VI---DVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                + +DE +   +  E+ +   +L   + E+             + N+V +MT+H+A
Sbjct: 501 AEARIENIDELITKVVSYEEENEAPTLSGFLEEVALVADIDSVD--GDDNQVLLMTLHSA 558

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE P V+L      +F                                     I    
Sbjct: 559 KGLEFPYVYLAGMEDGIFPSYMT--------------------------------ITADD 586

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            +  EE  RL YVG+TRA  +L +          ++        + +       + +   
Sbjct: 587 PTEIEEERRLCYVGITRAMKELTLSCAQQRMIRGETQYNKVSRFIKEIPRELVELGREFP 646

Query: 701 TNSINKDEWI 710
              + +    
Sbjct: 647 EKKLKEIPMP 656


>gi|261418602|ref|YP_003252284.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61]
 gi|261375059|gb|ACX77802.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61]
          Length = 725

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 123/692 (17%), Positives = 229/692 (33%), Gaps = 137/692 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV+  N             + ++ Q L   +        
Sbjct: 33  GAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVQALLGGAAEDVWIST 92

Query: 66  FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +  +  + I+ K  + +  L      
Sbjct: 93  FHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKDKNIDPKKFEPRTILATISGA 152

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +       K  +++     +   +   Y++   +N  LDF+DLI+ T  L  +    
Sbjct: 153 KNDLLTPEQFAK--RASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTTIHLFDR---V 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +      +  +I IDE QDT+  Q+ +++ L E F          + + AVGD  QSI
Sbjct: 208 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +R              +I L  ++RST  IL   ++V +   N + 
Sbjct: 258 YRWRGADIRNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIAHNVNRKP 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW             +   +    + + +       A
Sbjct: 310 KR---------------------LW-------TENPEGKPIVYYEAMNEVDE-------A 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +A  I   + +            + +D  VL R    + +I  +         I    
Sbjct: 335 QFVARRIQEAVESGER---------RYRDFAVLYRTNAQSRVIEEMF----LKANIPYQI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I + +DDLS + ++  P        I K+         +
Sbjct: 382 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 441

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++E + +                    + +   + ++    +    +L     R+   + 
Sbjct: 442 LFEALGELEMIGFSTKTAGALAAFRGQLEQWTQLQEYVPVTELVEEVLDQSGYREMLKAE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573
              E     + LDEFL+ T   E  +   SL   +++L              +A  + V 
Sbjct: 502 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLVAFLTDLALISDLDELNGTDQAAEGDAVV 561

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MT+H AKGLE PVVFL+     +F H                                 
Sbjct: 562 FMTLHAAKGLEFPVVFLIGMEEGIFPH--------------------------------- 588

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
            L     +   EE  RL YVG+TRA ++L++ 
Sbjct: 589 -LRSLENEDEMEEERRLAYVGITRAEEELVLT 619


>gi|119510681|ref|ZP_01629809.1| DNA helicase II [Nodularia spumigena CCY9414]
 gi|119464635|gb|EAW45544.1| DNA helicase II [Nodularia spumigena CCY9414]
          Length = 774

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 112/624 (17%), Positives = 209/624 (33%), Gaps = 103/624 (16%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139
           K I+ +++N        +    +      +++  + + F+    +    +   +   Y+E
Sbjct: 160 KEIVNKQLNLDDKKFDAR--SVRYAISNAKNQGFSPQEFEREQPNYRGRVIAQVYNCYQE 217

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
              +N  LDF+DLI+    L ++ D    +     ++ NHIL+DE QDT+  Q+++IR L
Sbjct: 218 KLAENNALDFDDLILVPTRLFQQND---QVLDYWHRKFNHILVDEYQDTNRTQYDLIRLL 274

Query: 200 TEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
             +    K+      R++F VGD  QSIYSF  A+   +L  ++       +   + S++
Sbjct: 275 VTNGEESKSAWEWQNRSVFVVGDADQSIYSFRMADVTILLEFQQDFGDGLADDDTR-SMV 333

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RS  +IL   +++              T                          
Sbjct: 334 KLEENYRSCENILQAANELIENNTQRIDKVLKPTR------------------------- 368

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
               + +Q       + + +       A  +   I N+   +                 +
Sbjct: 369 ---GSGEQIYCHKADNEIEE-------AEFVIGQIRNLAQQNPELD--------WGSFAI 410

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +         L   Y+I           D   IKD++A  R I +  D +S +
Sbjct: 411 LYRTNAQSRPFEE----LLVRYQIPYTVVGGMKFYDRKEIKDIIAYLRAIANPADTVSLL 466

Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYIHEL 491
            ++ +P     +  I  +    +E    ++E       +   A        +  K I+  
Sbjct: 467 RVINTPRRGIGKATIESLVNASYELGTPLWEILSDETSVNTLAGRSAKAVNNFAKMINTC 526

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRN-EQNSYSSL 547
              A      +    +L      Q   ++  +E  D    + E  N  L+  E++   SL
Sbjct: 527 KAQAARVPVSELLQELLNESGYIQDLQNQGTDEAEDRIQNVQELYNAVLQFQEESEDVSL 586

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +                    V +MT+H++KGLE PVVFLV     +F +       
Sbjct: 587 TAFLQSSALSSDLDN--LKDGQKAVSLMTLHSSKGLEFPVVFLVGLEQGLFPNYRSINNP 644

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                              + EE  RL YVG+TRA ++L I   
Sbjct: 645 ----------------------------------ESLEEERRLCYVGITRAQERLYISHA 670

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHN 691
                            + +    
Sbjct: 671 RERRLYGSREPAMRSQFLDELPEE 694


>gi|223983369|ref|ZP_03633555.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM
            12042]
 gi|223964541|gb|EEF68867.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM
            12042]
          Length = 1076

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 151/941 (16%), Positives = 297/941 (31%), Gaps = 102/941 (10%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ---CIEERFSLLSS 71
             +          Q+  I        E     +L     L  A Q        E    L  
Sbjct: 226  AVEAGRLEDCAVQMQRILYDAYPDKEKQANEVLLFLGKLTPAIQAAKNYDYREYRRALFG 285

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
               T+  T +  +    + K+   L + L         +         +        L  
Sbjct: 286  AIQTKISTLKDALDFNALRKQLNALAKDLVSRTYSEETLLSDLAL--TYTIIKPLTALTL 343

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
               A Y E K+    +DF+D+      +L   +  A    +  +  + I++DE QD++ +
Sbjct: 344  DYLALYAELKETQGGIDFDDMEHFAYQILTAENKLA--AKRYQERFDEIMVDEFQDSNDL 401

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q  +I  +           S    +F VGD KQSIY F G +P+ +       +      
Sbjct: 402  QNAIINLI-----------SRGANVFRVGDVKQSIYRFRGGKPQIMRDLMNDVR------ 444

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR---SSRIGQVGTV 308
              +   I L  ++RS   I+   + +F    N  G S+  T     +    ++      V
Sbjct: 445  -PENCFIHLSSNYRSKQMIVDFNNDLFLRLMNIPGCSDQYTDHDCVKTGAPAQKQDNYPV 503

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            +    +      Q    +             ++  I A+ IA  I     T         
Sbjct: 504  EFHALMTKALKEQDEGAENL-----------AANQIKAQYIAQQILTRHETSDFR----- 547

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
               Q KD +VLVR       +    +   +   I    + +       A++ L++  R +
Sbjct: 548  ---QWKDYVVLVRSHA----VKSHLKQAFDQAGIPYYIDAKAGFYQSEAMQILLSWFRIL 600

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            ++  D+LS   +L S  +   ++++ ++  +R          ++       +        
Sbjct: 601  INPADNLSLTAVLSSDFYQADDEELARLTLKRERRPIFEILKEEHHPLVADR-------- 652

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              L  IAQ          +       ++       +     D       +       SL 
Sbjct: 653  QRLNDIAQKQGLCALLDALFQIHHFYEE---HCTAQQRTNCDLLRQKAEQYSAEHSDSLT 709

Query: 549  ELISELEQYPPTIKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
              ++ ++Q                + V++MT+H +KGL+ PVVF     S        K+
Sbjct: 710  GFLAMIDQVSEEKTSEAIPVGNEDDVVKVMTIHQSKGLQFPVVF--YWASSRIDIMDKKE 767

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK-HLKKSTQEEYNRLLYVGMTRASDQLII 664
              I  +        + +P    R   +   I+  +     EE  R+LYV +TRA +Q+I+
Sbjct: 768  TCIADADLGVGLPALELPWRFKRPTAIRQAIEYKITLEELEENIRILYVALTRAQNQMIL 827

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                    E      T   ++      D  +               A   S  H      
Sbjct: 828  --VDTVKGELPHKPVTMNTLLDRKGTTDLILS--------------AMCESDSHFWKVRT 871

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-QTFNRG 783
              +    Q +  ++           +   P  L PS  +           S   +   RG
Sbjct: 872  IEDRWEVQQLQRRRKEVVSLPRYTEEKPLPVTLTPSETEQTAYIPALFPKSKAVRPAQRG 931

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
            + +H+ ++ +        ++ I S                +  +   LL           
Sbjct: 932  IQLHEAVERLPEG--EWTESLIRSLL------------PEIKRADLLLLLQLNKQPLFER 977

Query: 844  DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
                 V           +  I G++D ++  +  + + ++K+  H   + + +   +  Q
Sbjct: 978  CQKMSVDKELSFAVLSGNEFIQGQMDYVAQDENEVILIDFKSDRH--AQADQLKTLYARQ 1035

Query: 904  LSIYEKILKDSYPNKSLVCLLIYVSEPKVFII-PQNKLNKA 943
            +SIY + L +  P+K++   L      +   + P+ +L  A
Sbjct: 1036 ISIYLRCLHEMIPDKTIHAYLYSFDLDQFIEMTPEAELAAA 1076


>gi|294791935|ref|ZP_06757083.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27]
 gi|294457165|gb|EFG25527.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27]
          Length = 729

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 205/615 (33%), Gaps = 117/615 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +  +YE   +KN  LDF+DL++    LL+  +    +  K  +   +++IDE QDT+
Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSNEA---VLDKYSKRFRYVMIDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L   +          + +  VGD  QSIY++ GA+ + +L  ++       
Sbjct: 226 HAQYLLAKLLASHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 + I+L  ++RST  IL   + V    E     +                     
Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIENNEGRPKKN--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       D     + + +T+  +           A  I  TI+               
Sbjct: 307 LW------TDKTEGAKIQHFTAQSEHEE--------AAFIGDTIAKKHD---------IH 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D+ +L R    + ++            +           D   IKD++A  R + 
Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482
           +  DDLS + ++  P  +     + K+    R    +++  + +             K +
Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVAKLQDYARANGTSLFMTLTQLHLVDTIKGKTKEKLE 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
                I  L+   +  +  D    IL       Q       +     + + E L+     
Sbjct: 460 EFGILIFTLVAEMEDKTVLDILESILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519

Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +  + +  +++ + ++             +   V +MT+H AKGLE P+VFL      +F
Sbjct: 520 QDTNPNGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                      +     EE  RL YVG+TRA
Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717
             +L I   +  +   +++       + +      + ++  +      K     +   T 
Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPEELVDGLRAKRKVPDDIKRHVPQHMSVTS 663

Query: 718 HPENTPLEREETIKQ 732
            P   P+ R E I  
Sbjct: 664 RPVTKPIVRNEVIAD 678


>gi|88601852|ref|YP_502030.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
 gi|88187314|gb|ABD40311.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
          Length = 1149

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 170/949 (17%), Positives = 319/949 (33%), Gaps = 117/949 (12%)

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI---NKKSPDLKEKLKKSQDEFIKIRDR 113
            +  + + +          T K   QK     ++    +    L E L+K+   F    D+
Sbjct: 255  APPETLHKAAEEFLKIRPTGKLGSQKIWDNDDLIRFREAKTCLIENLEKAVPFFSLYIDK 314

Query: 114  FNTYKMFKST--LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
             + +     T       +A Y        K++   +DF DLI  T + L+       +  
Sbjct: 315  DSRFTASTITFFRDLALVAGYYFDLLHMLKRQANGVDFNDLIQLTREFLQSHQ--DIVAR 372

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
             I     +IL+DE QDT   Q+E+I ++  +   G       R+LF VGD KQSIY F  
Sbjct: 373  HIRPRYQYILVDEFQDTDPAQFEIITAIIGELQPGT------RSLFIVGDPKQSIYLFRN 426

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED- 290
            A+  R    +            K ++I L  SFRS  +++  V+ +FS    +     + 
Sbjct: 427  ADVTRFKEAQTRILSD-----CKGNLINLDTSFRSCREVIGCVNYLFSRIFASTEKPWEF 481

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                I+    R    G++ +     +   S+ +  +E               + +   + 
Sbjct: 482  GYEPIQVCDDRKASPGSITVLLPGKAPKGSERSETKEI-------------EAGMVADLV 528

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            + I +         +G  R     DI +L+ +R      T      +         +   
Sbjct: 529  HQIVSCGSFQITDRDGVMRPAGYGDIAILIERRTHLTRYTTALSRKET----PFYVHGGI 584

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYE 468
                   I D+  +  F+L   D  +   +L+SP F+FS+  I+ I          ++YE
Sbjct: 585  GFYSRQEIYDIYNILSFLLRPYDSAALFGVLRSPYFSFSDPLIYHILNVPGAKRRWSLYE 644

Query: 469  YIQKFANCGISK--------------------FQHVIKYIHELIHIAQFCSPHDFFTLIL 508
             ++  A    ++                         + +    ++A           I+
Sbjct: 645  KLRACAERFCTRPSEIEPSAEILSCSPADQELILRAARLLESWRNLAGREPVVPLVNRII 704

Query: 509  GAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                    + +   G +    L + L       +  Y SL +L+ ++       +R   A
Sbjct: 705  RESGILTIYGALEQGEQQAANLTKLLGIIRGRTEGGYYSLFDLVQDMMISIADEEREGEA 764

Query: 568  NHN-----EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
              +      V IMTVH AKGLE PVV L D GS              P L          
Sbjct: 765  ALDTLSKTSVNIMTVHAAKGLEFPVVILPDMGSSREGKLGPILSGDHPHLYGVRIPDPDQ 824

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN----TSNEKKSNQ 678
                    + + L    K+    E  RL YVG TRA D L++C         S +K +N+
Sbjct: 825  DFDIKETPVYTALSLIQKEKESAERKRLFYVGATRARDHLVLCGKQPDKFYESVDKSNNR 884

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
              W   ++    +      +   +  +  + I     T   + T +  +E +  L    +
Sbjct: 885  IDWVCTLFGITKDIAEEGGVISIDPEDGGKPIDITILTDPDQLTRMWAQEALPPLTLPDE 944

Query: 739  I-------PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL---------SDNQTFNR 782
                     + L+S + ++      +  + I   GK                S       
Sbjct: 945  YAKLSGTRKRGLYSDMPDEKATIRPVPVTDIGLLGKATGHEETIHQVTIPGGSHLLPDEI 1004

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI-TRLLENPMMTTAM 841
            G ++H +            K+ + SY         + E ++   ++  R    P++    
Sbjct: 1005 GTLLHHIF------SGKDTKSVLVSY------GITSPEAESFCNTLYQRFCSTPLIRD-- 1050

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTH 900
            +  S+ EVS          +  ++GRID++    +    + +YK+      E        
Sbjct: 1051 AVRSFQEVSFI----TYSGNFPVTGRIDRLIQDSRNEWAVIDYKSGDKTGAE-------- 1098

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI---IPQNKLNKAFAE 946
              QL++Y     +    + +   L  +   +      +   +++ A   
Sbjct: 1099 -LQLNVYRIA-AEVLTGQPVRMFLYSMKTGEFTEPRFLSDEEIHVALKR 1145


>gi|319765417|ref|YP_004130918.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52]
 gi|317110283|gb|ADU92775.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52]
          Length = 724

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 123/692 (17%), Positives = 229/692 (33%), Gaps = 137/692 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV+  N             + ++ Q L   +        
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVQALLGGAAEDVWIST 91

Query: 66  FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +  +  + I+ K  + +  L      
Sbjct: 92  FHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKDKNIDPKKFEPRTILATISGA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +       K  +++     +   +   Y++   +N  LDF+DLI+ T  L  +    
Sbjct: 152 KNDLLTPEQFAK--RASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTTIHLFDR---V 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +      +  +I IDE QDT+  Q+ +++ L E F          + + AVGD  QSI
Sbjct: 207 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +R              +I L  ++RST  IL   ++V +   N + 
Sbjct: 257 YRWRGADIRNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIAHNVNRKP 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW             +   +    + + +       A
Sbjct: 309 KR---------------------LW-------TENPEGKPIVYYEAMNEVDE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +A  I   + +            + +D  VL R    + +I  +         I    
Sbjct: 334 QFVARRIQEAVESGER---------RYRDFAVLYRTNAQSRVIEEMF----LKANIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I + +DDLS + ++  P        I K+         +
Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 440

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++E + +                    + +   + ++    +    +L     R+   + 
Sbjct: 441 LFEALGELEMIGFSTKTAGALAAFRGQLEQWTQLQEYVPVTELVEEVLDQSGYREMLKAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573
              E     + LDEFL+ T   E  +   SL   +++L              +A  + V 
Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLVAFLTDLALISDLDELNGTDQAAEGDAVV 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MT+H AKGLE PVVFL+     +F H                                 
Sbjct: 561 FMTLHAAKGLEFPVVFLIGMEEGIFPH--------------------------------- 587

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
            L     +   EE  RL YVG+TRA ++L++ 
Sbjct: 588 -LRSLENEDEMEEERRLAYVGITRAEEELVLT 618


>gi|331085909|ref|ZP_08334992.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406832|gb|EGG86337.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 741

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 115/604 (19%), Positives = 192/604 (31%), Gaps = 111/604 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YE   K N  LDF+DL++ T  L + +     I         +I++DE QDT+ 
Sbjct: 170 AEAYKEYERQLKANNALDFDDLLVKTVQLFQTQPE---ILEYYQDRFRYIMVDEYQDTNT 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+++I  L   +          + L  VGD+ QSIY F GA  + +L  ++  +     
Sbjct: 227 VQFKLISLLAAKY----------KNLCVVGDDDQSIYKFRGANIQNILSFEKEFEH---- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST+ IL   + V       +  S                     L
Sbjct: 273 ----TKVIKLEQNYRSTSTILDAANAVIKNNVGRKAKS---------------------L 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W             ++  +  +  +  +       A  I   I   +             
Sbjct: 308 W-------TENGEGEKIQFRQFDTAYDE-------AEYIVGDIRERVDNG---------K 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VL R    + L             I               IKDL+A  + I +
Sbjct: 345 AAYCDHAVLYRTNAQSRLFEEKM----ITANIPYKIVGGVNFYARKEIKDLLAYLKTIDN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFA-----NCGISKFQHV 484
            +DDL+   ++  P        + +I     +   + YE +            ISK +  
Sbjct: 401 GKDDLAVRRIINVPKRGIGLTTVNRITEAAQQRGISFYEALCSADLVPGLGRSISKLESF 460

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
              I      A+  S  +    IL      ++  +    E    +  +DEFLN     E+
Sbjct: 461 AAMIEYFRKEAEHLSITELMKEILTETGYVEELKAEGEEEAEVRLQNIDEFLNKIAAYEE 520

Query: 542 NSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    L  L   LE+              + V +MT+H+AKGLE P V+L      +F  
Sbjct: 521 SCEEELPTLSGFLEEVALVADIDSLDEESDYVVLMTLHSAKGLEFPYVYLAGMEDGIFPS 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              I     +  EE  RL YVG+TRA  
Sbjct: 581 YMT--------------------------------ITADDPTEIEEERRLCYVGITRAKK 608

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L +          ++        + +         KI     +   +  AY  +    +
Sbjct: 609 ELAMTCARRRMIRGETQYNKMSRFLKEVPPQLLSTGKIVEKEELELPKQNAYVQAKQSFQ 668

Query: 721 NTPL 724
             P 
Sbjct: 669 AKPF 672


>gi|153809769|ref|ZP_01962437.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174]
 gi|149833947|gb|EDM89027.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174]
          Length = 744

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 117/739 (15%), Positives = 223/739 (30%), Gaps = 135/739 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   +  +         
Sbjct: 28  GAGSGKTRVLTHRIAYLIAEKGVNPWNILAITFTNKAAHEMRERVDKIAGSEGGSVWVST 87

Query: 66  FSLLSSFFLTQ--KFTPQKNIITQEINKKSPDLKEKL-------------KKSQDEFIKI 110
           F       L +        N  T         L +++             +    +    
Sbjct: 88  FHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLIKEICRKMNIDTKKVKERALLAQISHA 147

Query: 111 RDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           +D        +    +      A  +   Y+ A ++N  LDF+DLI  T +L +      
Sbjct: 148 KDELLNPDEMEMNAGADFNQKRAAQVYREYQAALRRNNALDFDDLICKTVELFQN---CG 204

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     +   +I++DE QDT+  Q++ +  L   +            L  VGD+ QSIY
Sbjct: 205 DVLQSYQERFRYIMVDEYQDTNTAQFKFVSLLASRYE----------NLCVVGDDDQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA    +L  +R+             +I L  ++RST +IL   + V +     +  
Sbjct: 255 RFRGANIGNILGFERVFP--------DAKVIRLEQNYRSTQNILNAANGVIANNTERKEK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW             ++  +  + +   +       A 
Sbjct: 307 T---------------------LW-------TENPEGEKIHFRQFMNGYEE-------AE 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I+      T          +  +  VL R    + L             I     
Sbjct: 332 FVVGDIARRHREGT---------AEYHNCAVLYRTNAQSRLFEEK----CLLANIPYKIV 378

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     IKDL+   + + +  DDL+   +L  P        + +I         + 
Sbjct: 379 GGVNFYARKEIKDLLCYLKTVDNAADDLAVRRILNVPKRGIGATTVGRIQDYADMMNISF 438

Query: 467 YEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           Y+ ++           +SK    + +I  L   AQ  S  +    I+       +  +  
Sbjct: 439 YDALRVAEEVPSIGRSLSKVDGFVTFIQSLKSKAQAYSVSELLEEIIDLTGYVDELKAED 498

Query: 522 GNEVI---DVLDEFLNFTLRNEQ-----NSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             E     + +DE ++ T+  E+     N  ++L   + E+             N + V 
Sbjct: 499 TEEARARVENIDELISKTVSYEETMKAENREATLSGFLEEIALIADIDSVD--ENQDYVV 556

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE P V+L      +F                                   
Sbjct: 557 LMTLHSAKGLEFPYVYLAGMEDGMFPSSMC------------------------------ 586

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
             I    +S  EE  RL YVG+TRA  +L +          ++        V +      
Sbjct: 587 --IFSGDQSDLEEERRLCYVGITRAMKELTMTSAQQRMVRGETQYNRVSRFVREIPRELV 644

Query: 694 RVKKIKLTNSINKDEWIAY 712
            +      +     E  + 
Sbjct: 645 DLGHTVQEHKPKIPEAKSP 663


>gi|308172547|ref|YP_003919252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307605411|emb|CBI41782.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|328552312|gb|AEB22804.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens TA208]
 gi|328910656|gb|AEB62252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens LL3]
          Length = 739

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 119/734 (16%), Positives = 233/734 (31%), Gaps = 134/734 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++ +++      +     
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMKERVESILGPGADEIWIST 91

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110
           F  +    L +            I   +  L       ++                    
Sbjct: 92  FHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGILKERNIDPKKFDPRSILGSISSA 151

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++     + F  T       +   + A Y++   KN  LDF+DLI+ T  L ++      
Sbjct: 152 KNELIEPEEFAKTAGGYYDQVTSDVYADYQKKLLKNQSLDFDDLIMTTIKLFER---VPE 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ +++ L                +  VGD  QSIY 
Sbjct: 209 VLEFYQRKFQYIHVDEYQDTNRAQYLLVKQLAARLE----------NICVVGDSDQSIYR 258

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++             ++I L  ++RST  IL   ++V     N +  +
Sbjct: 259 WRGADIANILSFEKDYP--------SANVILLEQNYRSTKRILQAANEVIKNNSNRKPKN 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + S+ S  +   +        + 
Sbjct: 311 ---------------------LW-------TGNDEGVKLSYYSGDNEFGEG-------QF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I  +  +            +  DI +L R    + +I            ++     
Sbjct: 336 VAGKIYELNSSGRR---------KLSDIAILYRTNAQSRVIEETL----LKAGLNYNIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKD++A  R + + +DD+SF  ++  P        + KI         +++
Sbjct: 383 GTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGMSLF 442

Query: 468 EYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + I++           +        I  L ++  + S  +    IL   + R+   +   
Sbjct: 443 QAIKQVDFIGVSAKAANALDGFGAMIENLTNMQDYLSITELMEEILDKTEYREMLKAEKS 502

Query: 523 NEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRI 574
            E     + +DEFL+ T   EQ +   SL   +++L       +           + V +
Sbjct: 503 IEAQSRLENIDEFLSVTKNFEQKSEDKSLVAFLTDLALIADIDQLDQKEEESGGKDAVTL 562

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE PVVFL+     VF H                                  
Sbjct: 563 MTLHAAKGLEFPVVFLMGMEEGVFPHSRSLMEEAEMEEE--------------------- 601

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                         RL YVG+TRA ++L +      +   ++N       + +   +   
Sbjct: 602 -------------RRLAYVGITRAEEELYLTNAKMRTLFGRTNMNPESRFIREIPGDLLE 648

Query: 695 VKKIKLTNSINKDE 708
               K    +    
Sbjct: 649 NLNEKKNPRMQPGR 662


>gi|56962858|ref|YP_174585.1| ATP-dependent DNA helicase UvrD [Bacillus clausii KSM-K16]
 gi|56909097|dbj|BAD63624.1| UvrD/REP family ATP-dependent DNA helicase [Bacillus clausii
           KSM-K16]
          Length = 751

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 110/697 (15%), Positives = 232/697 (33%), Gaps = 133/697 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + + + + P+       I+ + S+ +       + +     +        ++ S
Sbjct: 72  AAREMKDRVAQLVGPIAEDIW--ISTFHSMCVRM-LRRDIDRI-GYSRNFTILDSSDQLS 127

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           ++     +Q   P+K    + I       K +L+ +            +     ++    
Sbjct: 128 VIKQILKSQNVDPKK-FDPKAILGMISAAKNELQTA------------SKFAQIASGVFE 174

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A  + + YE+  K+N  LDF+DLI+ T  L  +      +     ++  +I +DE QD
Sbjct: 175 QVAADVYSEYEKRLKQNNALDFDDLIMKTIQLFNE---VPEVLDFYQRKFQYIHVDEYQD 231

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L              + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 232 TNKAQYRLVKLL----------GDRLQNICVVGDSDQSIYRWRGADIQNILSFEKDYP-- 279

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I L  ++RST  IL   + V +   N +  +                   
Sbjct: 280 ------DATVILLEQNYRSTKTILKAANSVIANNGNRKPKN------------------- 314

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW       ++    +   +        + ++    A+ +   I              
Sbjct: 315 --LW------TENDEGAKISVY--------EAATEQAEAQFVVEKIKE---------AAA 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +     KD+ +L R    + +I            +           D   IKD++A  R 
Sbjct: 350 EPGFSYKDVAILYRTNAQSRIIEEYF----VKSNLDYNIVGGTKFYDRKEIKDVLAYLRL 405

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481
           + + +DD+S   ++  P        + KI         ++++ + +           +K 
Sbjct: 406 VANPDDDISLQRVVNVPKRGIGATTVDKIAAYADAHGLSMFKALGELEQIGVTARARTKL 465

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
                 ++  +H+  + S  +    +L     R+   +    E     + +DEF+  T  
Sbjct: 466 VEFRDQVNNWVHMQDYLSVTELVEELLDKTGYREMLKNEQTIEAQSRLENIDEFITVTQE 525

Query: 539 NE-QNSYSSLQELISELEQYPPTIKRAHSAN---HNEVRIMTVHTAKGLESPVVFLVDTG 594
            E ++    L   +++L       +            + +MT+H+AKGLE P VFL+   
Sbjct: 526 FEKRSEEKDLVSFLTDLALVADIDQLDKDEEATKKEAITLMTLHSAKGLEFPYVFLIGME 585

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             VF H                                                RL YVG
Sbjct: 586 EGVFPHSRSLFEEEEMEEE----------------------------------RRLAYVG 611

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           +TRA  +L +      +   ++N       + +    
Sbjct: 612 ITRAEKRLYLTSAKMRTLYGRTNTNPTSRFIAEIPAE 648


>gi|312144162|ref|YP_003995608.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus']
 gi|311904813|gb|ADQ15254.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus']
          Length = 715

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 115/588 (19%), Positives = 196/588 (33%), Gaps = 116/588 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y++  K N  +DF+DLI  T  L KK      +     +   +IL+DE QD + 
Sbjct: 172 ADLYEKYQKQLKANNAVDFDDLIQLTVKLFKKYP---KVLEHYQERFKYILVDEYQDINH 228

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E++  L E +          R +  VGD  Q IY F GA+ + +L  +         
Sbjct: 229 AQYELVNLLAERY----------RNVCVVGDPDQGIYGFRGADIRNILNFEDDYP----- 273

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II+L  ++RS A+IL     V     + +  S                     L
Sbjct: 274 ---DAKIIKLEQNYRSKANILKAAQAVIKNNSSRKEKS---------------------L 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W       + +  P+ E +        +  S    A         +          K + 
Sbjct: 310 W------TEKESGPEIELY--------EAESEKDEADFFCRMAKEL---------KKSKD 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D+ VL R    +     +       Y I           + L IKD+MA  R I +
Sbjct: 347 YSYDDMAVLYRTNSQSRAFEDML----MKYGIPYQITGGVRFYERLEIKDIMAYLRLIYN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEY------IQKFANCGISKFQH 483
             DD+SF+ +   P        + KI      E+ ++Y+           ++    +   
Sbjct: 403 PADDISFLRITNRPKRGIGAGTLAKIQQYAETESISLYQAALQSKSNPDLSSSYQKRVLA 462

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
             K I EL       +       +L     R+       N+     + ++E  +      
Sbjct: 463 FTKIIEELREQKDEIALARLTETLLEKSGYRKDLEEEKTNKAETRLENIEELFSVINDYM 522

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + ++ ++L   + E+               + V +MT+H+AKGLE PV+FLV     +F 
Sbjct: 523 KNSNENTLAGFLEEVTLMSDIDT--LEEEQSAVTLMTIHSAKGLEFPVIFLVGLEEGIFP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H +                                     ++   EE  RL YVGMTRA 
Sbjct: 581 HANSL----------------------------------YERDGIEEERRLCYVGMTRAM 606

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           D+L + +        +         + +         K + T+   + 
Sbjct: 607 DRLFLSRAKIRLRFGERQINPPSQFLEEIPEELLIDPKKEKTDIAKEA 654


>gi|299535245|ref|ZP_07048569.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1]
 gi|298729366|gb|EFI69917.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1]
          Length = 750

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 102/608 (16%), Positives = 201/608 (33%), Gaps = 114/608 (18%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           I+ K  + +  L        +     +                 +   YE+  ++N  LD
Sbjct: 135 IDPKRFEPRAILNAISAAKNECIAADDYAGQMNDKNPYEQTVARVYKGYEKRLRRNQSLD 194

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F+DLI+ T  L K+      +      +  +I +DE QDT+  Q+ +++ L + F     
Sbjct: 195 FDDLIMTTITLFKR---VPEVLEYYQNKFQYIHVDEYQDTNKSQYLLVQLLAKKF----- 246

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                + +  VGD  QSIY + GA+   +L  ++              +I L  ++RST 
Sbjct: 247 -----KNICVVGDSDQSIYRWRGADIGNILSFEKDYPT--------AKVIMLEQNYRSTK 293

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL   + V                                               ++ +
Sbjct: 294 RILQAANDVIQNNTTRYPKEL----------------------------RTENSEGEKIA 325

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
               ++   +       A+ +  TI  +I  +              D  +L R    + +
Sbjct: 326 LYKAYNEQEE-------AQFVVQTIQQLIEKENR---------SFDDFAILYRTNAQSRV 369

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
           +  +         ++          D   IKDL+A  R I + +DDLS   ++  P  + 
Sbjct: 370 MEEVL----VKSNMAYQIVGGTKFYDRKEIKDLLAYLRLIANNDDDLSLARIINEPKRSI 425

Query: 449 SEDDIFKI-CTQRHETETVYEYIQKFANC-----GISKFQHVIKYIHELIHIAQFCSPHD 502
                 K+      +  ++++ +             +  +     I     + ++ S  +
Sbjct: 426 GATSFEKMARYAIDQDRSIFDAMNDLVFMGLSGKAANSAEQFYAMIKGFTQMQEYLSVTE 485

Query: 503 FFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYP 558
               ++     R    +    E     + ++EFL+ T    E++   SL   +++L    
Sbjct: 486 IVEQVIDKSGYRAMLQNEKTIEAESRLENIEEFLSVTKAFEERSDDRSLIAFLTDLALIA 545

Query: 559 PTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                    A+   + +MT+H AKGLE PVVF++     +F H                 
Sbjct: 546 DIDALDKEDASKGNIILMTMHAAKGLEFPVVFIIGMEENIFPHSRSLD------------ 593

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                                  +   EE  RL+YVG+TRA ++L +    + +   +S+
Sbjct: 594 ----------------------DQDEMEEERRLMYVGVTRAEERLYLTCAQSRTIFGRSS 631

Query: 678 QRTWYDMV 685
                  +
Sbjct: 632 FNNASRFL 639


>gi|126649601|ref|ZP_01721842.1| PcrA [Bacillus sp. B14905]
 gi|126593926|gb|EAZ87849.1| PcrA [Bacillus sp. B14905]
          Length = 750

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 98/575 (17%), Positives = 194/575 (33%), Gaps = 114/575 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   YE+  ++N  LDF+DLI+ T  L K+      +      +  +I +DE QD
Sbjct: 174 QTVARVYKGYEKRLRRNQSLDFDDLIMTTITLFKR---VPEVLEYYQNKFQYIHVDEYQD 230

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L E F          + +  VGD  QSIY + GA+   +L  ++     
Sbjct: 231 TNKSQYLLVQLLAEKF----------KNICVVGDSDQSIYRWRGADIGNILSFEKDYPN- 279

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST  IL   + V                              
Sbjct: 280 -------AKVIMLEQNYRSTKRILQAANDVIQNNTTRYPKEL------------------ 314

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            ++ +    ++   +       A+ +  TI  ++  +       
Sbjct: 315 ----------RTENAEGEKIALYKAYNEQEE-------AQFVVQTIQQLMEKENR----- 352

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  +L R    + ++  +         +           D   IKDL+A  R 
Sbjct: 353 ----TFDDFAILYRTNAQSRVMEEVL----VKSNMVYQIVGGTKFYDRKEIKDLLAYLRL 404

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC-----GISKF 481
           I + +DDLS   ++  P  +       K+      +  ++++ +             +  
Sbjct: 405 IANNDDDLSLARIINEPKRSIGATSFEKMARYAIEQDRSIFDAMNDLIFMGLSGKAANSA 464

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +     I     + ++ S  +    ++     R    +    E     + ++EFL+ T  
Sbjct: 465 EQFYAMIKGFTGMQEYLSVTELVEQVIDKSGYRTMLQNEKTIEAESRLENIEEFLSVTKA 524

Query: 539 N-EQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             E++   SL   +++L             A+   + +MT+H AKGLE P+VF++     
Sbjct: 525 FEERSDDKSLIAFLTDLALIADIDALDKEDASKGNIILMTMHAAKGLEFPIVFIIGMEEN 584

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H                                        +   EE  RL+YVG+T
Sbjct: 585 IFPHSRSLD----------------------------------DQDEMEEERRLMYVGVT 610

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           RA ++L +    + +   +S+       + +   +
Sbjct: 611 RAEERLYLTCAQSRTIFGRSSFNNASRFLGEISED 645


>gi|295093819|emb|CBK82910.1| Superfamily I DNA and RNA helicases [Coprococcus sp. ART55/1]
          Length = 782

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 122/695 (17%), Positives = 228/695 (32%), Gaps = 134/695 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  + ++  + + +  V+ +N             + ++   +      +     
Sbjct: 24  GAGSGKTRVITHRVAYLMEHEGVNPLNILAITFTNKAAREMRERVDLIVGDGADRVWVST 83

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQ------------DEFIKI 110
           F  L    L +        KN    + + +   +K  LK  Q             E  K 
Sbjct: 84  FHSLCVRILRRYADKIGYGKNFDIYDSDDQKSTVKSILKDFQIDPKRYPEKMFMAEISKA 143

Query: 111 RDRFNTYKMFKSTLASLTL---AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++++ +   F    A+      A  +   Y+   KKN  +DF+DLI  T +L +      
Sbjct: 144 KEKYLSPDEFAKKNAADYAGTKAAEVYTEYQSRLKKNNAMDFDDLIYKTVELFEHNPD-- 201

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +         +I++DE QDT+ IQ+ +++ L   +          R L  VGD+ QSIY
Sbjct: 202 -VLDTYQNRFRYIMVDEYQDTNHIQFLLVKMLARKY----------RNLCVVGDDDQSIY 250

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA    +L  ++  +           +I+L  ++RS  +IL   + V       +  
Sbjct: 251 KFRGANITNILNFEKEYE--------DAKVIKLEQNYRSCGNILAAANAVIQHNAGRKDK 302

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW         +   ++ S+        +         
Sbjct: 303 A---------------------LW-------TDKDAGEKISFEQCDSEYAEGD------- 327

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I  ++             +  +DI +L R    +     +         I     
Sbjct: 328 MVASRIKTLVRQG----------VDYRDIAILYRTNAQSR----VLGEKMVYANIPYRVY 373

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     IKD++A  + I +  D+L F  ++  P     E  + K+         ++
Sbjct: 374 GGTNFYARKEIKDVLAYLKVINNSTDNLYFRRVVNVPKRGIGEASLSKVESFADAYGLSM 433

Query: 467 YEYIQK------FANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFIS 519
            +   +       A    +K +   + I     + A   S    +  IL       + I+
Sbjct: 434 MDAAARADEIPGMAAKTSAKIRQFAELITSFRDMLADGESLDSVYDRILEDTGYESELIA 493

Query: 520 RFGNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               E +   + +DE  N  +   E N  + L E + E+           S + N+V++M
Sbjct: 494 EHTEEAMTRLENIDELRNKVVEFTEDNEEAGLSEFLEEIALVSDLDAM--SEDDNQVKLM 551

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P VF+     +VF                                     
Sbjct: 552 TLHSAKGLEFPYVFICGMEDRVFPSGMALNSDDPD------------------------- 586

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                    EE  RL YVG+TRA  +L +      
Sbjct: 587 -------ALEEERRLCYVGITRAMKKLYLSAAKER 614


>gi|294793798|ref|ZP_06758935.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44]
 gi|294455368|gb|EFG23740.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44]
          Length = 729

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 205/615 (33%), Gaps = 117/615 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +  +YE   +KN  LDF+DL++    LL+  +    +  K  +   +++IDE QDT+
Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSNEA---VLDKYSKRFRYVMIDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L   +          + +  VGD  QSIY++ GA+ + +L  ++       
Sbjct: 226 HAQYLLAKLLASHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 + I+L  ++RST  IL   + V    E     +                     
Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIENNEGRPKKN--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       D     + + +T+  +           A  I  TI+               
Sbjct: 307 LW------TDKTEGAKIQHFTAQSEHEE--------AAFIGDTIAKKHD---------IH 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D+ +L R    + ++            +           D   IKD++A  R + 
Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482
           +  DDLS + ++  P  +     + K+    R    +++  + +             K +
Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVAKLQDYARANGTSLFMTLTQLHLVDTIKGKTKEKLE 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
                I  L+   +  +  D    IL       Q       +     + + E L+     
Sbjct: 460 EFGILIFTLVAEMEDKTVLDILESILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519

Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +  + +  +++ + ++             +   V +MT+H AKGLE P+VFL      +F
Sbjct: 520 QDTNPNGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                      +     EE  RL YVG+TRA
Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717
             +L I   +  +   +++       + +      + ++  +      K     +   T 
Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPEELVDGLRAKRKVPDDIKRHVPQHMSVTS 663

Query: 718 HPENTPLEREETIKQ 732
            P   P+ R E I  
Sbjct: 664 RPVTKPIVRNEVIAD 678


>gi|145589486|ref|YP_001156083.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus
            QLW-P1DMWA-1]
 gi|145047892|gb|ABP34519.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polynucleobacter
            necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1185

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 173/990 (17%), Positives = 336/990 (33%), Gaps = 110/990 (11%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINK--------YVSLSMETGNPTILKKAQTLQQAS 57
            G+S  +    +   L  LP   +   +         +++      +       + L  A 
Sbjct: 226  GISPVDRLTQVLHRL-HLPNPLMVLWDASNALEDLRFLAKCFANSSSQDSDLLEYLLPAI 284

Query: 58   Q----TQCIEERFSLLSSFFLTQK-----------FTPQKNIITQEINKKSPDLKEKLKK 102
                    + +  S L + FLT+               QK +  + ++ +  +     + 
Sbjct: 285  DCKEQGGSVMDVASTLQTTFLTKDLKYRSNNDKALGALQKYLDAEGLSDRVAEHIAIKQS 344

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                F           +     A   L + + AH    K+   V DF+DL I  + L+  
Sbjct: 345  WGHSFEAYLLWQAEQDVLAINQAWFALNQSMMAHASAKKENMRVRDFDDLEIGVSTLMAD 404

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               +A+++ ++D +   ILIDE QDT+ +QW+++R+    +  G +       +F VGD 
Sbjct: 405  AANAAYLQARLDAKYKQILIDEFQDTNPLQWQILRA----WLAGYSAGDDKPKVFIVGDP 460

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQSIY F  A+P+     K+       +       IE   + R+  +I   V+++F+  +
Sbjct: 461  KQSIYRFRRADPRLFESAKQ-----FLHEELGAVYIEQDKTRRNAPEINQAVNRIFTDEQ 515

Query: 283  NAQGLSEDSTTTIRHRSSRI------GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
                       T+              + G V L   +      +   +  ++       
Sbjct: 516  IPPEYPYSKQETLWTSPVLDRPGDAYAEQGEVFLLPLIPYAEKLEEVREGSAFDKAIADP 575

Query: 337  PQESS---ASILARRIAYTISNMIGTDTIFSNGK----KRVIQAKDILVLVRKRKDTPLI 389
             Q ++        + +   I++++ T  +          R  +A D L+LV++R+     
Sbjct: 576  GQTNAAIQRYREGQALGRLINHLLKTRKVPDQADGKTVWRAARASDFLLLVKRRQFLTEY 635

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                R       ++   +    L + L + DL+AL   +++   DL    +L+SP+FNF+
Sbjct: 636  ERALRE----AGLAYESSRLGGLLNTLEVDDLIALLTVLVTPRHDLPLAQVLRSPIFNFT 691

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
            E  + K+       +    +     +   ++ Q   +Y+     + +    HD    I  
Sbjct: 692  EKQMQKLAVA-MNADQYRSWWDALQDSQDAQLQTAARYLKHWHLLGERLPVHDLLDRIYQ 750

Query: 510  AKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--------- 556
                R ++ +        +V+  LD FL   L      Y SL   I E+           
Sbjct: 751  EGDVRIKYAAICQEIDRPQVLANLDAFLEVALDQNGGQYPSLSRFIQEINAKRRGDDDET 810

Query: 557  ----------------YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                                   +       VR+MT+H AKGLESP V L+D  +   + 
Sbjct: 811  PDEGDVDATGDENLVELNGENDMSEEDQQQRVRMMTIHGAKGLESPFVILLDANNTDANV 870

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
             +   +         P             +   +LI+  K   + E   LLYV MTRA  
Sbjct: 871  DYSGVLMDWAPHEQSPSHLSLFTSKTL-TSPRLELIEAEKSIGENENWNLLYVAMTRARQ 929

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L I   +    +   +                            K        +     
Sbjct: 930  GLWISGDAQKPTKNNPDGLDKSSW-------------------YGKASNAGIPIAVVPVG 970

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN----PSTIDTKGKTNLESLLSD 776
                E     K    E  I   + + +    N   +L+      T++     + +    D
Sbjct: 971  MEHKEPAHLTKDGAHESAIEDFVLNWLPAIQNHDQLLSDIEGGQTLEVFVGGDKQVDEPD 1030

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
             +    G   H+LL+++           + +     +         + L+  +T +LE P
Sbjct: 1031 PEILEEGNHFHQLLEMMTAQTSAPLMQAMPSKQEIVDWLGIHEDHAEQLIKRVTAVLETP 1090

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
             +   ++  ++ +      I         S R+D++     ++ I +YK    +P E   
Sbjct: 1091 ALKKYLTDGAWVQAWNELDIASQDGK---SYRMDRLVEFDTHLAIIDYK--LTIPPEGSE 1145

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
                +  QL+ Y+K+L+    +K     LI
Sbjct: 1146 QYEKYCKQLANYQKVLEHIRSDKPSKAFLI 1175


>gi|331091397|ref|ZP_08340236.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404261|gb|EGG83808.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 741

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 97/553 (17%), Positives = 183/553 (33%), Gaps = 115/553 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YE+  + N  LDF+DL++ T  L +     A +     +   +I++DE QDT+
Sbjct: 169 VAKVYKEYEKQLRDNNALDFDDLLLKTVQLFQT---QADVLDYYQERFRYIMVDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+++IR L   +          + L  VGD+ QSIY F GA  + +L  +++      
Sbjct: 226 TVQFQLIRILAGKY----------KNLCVVGDDDQSIYKFRGANIQNILNFEKVF----- 270

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RSTA+IL   + V       +  +                     
Sbjct: 271 ---ADARVIKLEQNYRSTANILNAANAVIRHNTGRKDKT--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW             ++  +  +  +  +       A  I   I   +           +
Sbjct: 307 LW-------TDNEEGEKIGFRQFDTAFDE-------AEYIVDEIRKGVSG---------K 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D  +L R    + +             I     +         IKDL++  + I 
Sbjct: 344 GYTYSDNAILYRTNAQSRMFEEKFVA----ANIPYKIIEGVNFYARREIKDLLSYLKTID 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQH 483
           + +DDL+   ++  P  +     + ++         + Y+ +            +SK + 
Sbjct: 400 NGKDDLAVRRIINVPKRSIGLTTVNRVQENALERGISFYDALSSADLIDNIGRSLSKIES 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
            +  I      ++  S       I+      +   +    E     + ++E  +  +  E
Sbjct: 460 FVALIEHFKEQSEKMSLSQLMEEIIEMTGYIESLEAESEIEAETRIENIEELKSKIIAYE 519

Query: 541 QN---SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           ++      +L   + E+             N + V +MT+H+AKGLE P V+L      +
Sbjct: 520 ESCEDEKPTLSGFLEEVALVADVDT--LDENSDYVVLMTLHSAKGLEFPNVYLAGMEDGL 577

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                     I        EE  RL YVG+TR
Sbjct: 578 FPSYMT--------------------------------ITADDPMEIEEERRLCYVGITR 605

Query: 658 ASDQLIICKHSNT 670
           A   L +      
Sbjct: 606 ARKHLTMTCARRR 618


>gi|16077729|ref|NP_388543.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221308498|ref|ZP_03590345.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221312821|ref|ZP_03594626.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221317745|ref|ZP_03599039.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221322024|ref|ZP_03603318.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|7674149|sp|O34580|PCRA_BACSU RecName: Full=ATP-dependent DNA helicase pcrA
 gi|2577965|emb|CAA75552.1| PcrA protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2632975|emb|CAB12481.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 739

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 119/616 (19%), Positives = 208/616 (33%), Gaps = 124/616 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A Y++   KN  LDF+DLI+ T  L  +      +     ++  +I +DE QD
Sbjct: 171 QVVSDVYADYQKKLLKNQSLDFDDLIMTTIKLFDR---VPEVLEFYQRKFQYIHVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L E F          + L  VGD  QSIY + GA+   +L  ++     
Sbjct: 228 TNRAQYMLVKQLAERF----------QNLCVVGDSDQSIYRWRGADITNILSFEKDYPN- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   S+I L  ++RST  IL   ++V     N +  +                   
Sbjct: 277 -------ASVILLEQNYRSTKRILRAANEVIKNNSNRKPKN------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW              + S+    +   +        + +A  I  +  T        
Sbjct: 311 --LW-------TENDEGIKISYYRGDNEFGEG-------QFVAGKIHQLHSTGKR----- 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  DI +L R    + +I            ++          D   IKD++A  R 
Sbjct: 350 ----KLSDIAILYRTNAQSRVIEETL----LKAGLNYNIVGGTKFYDRKEIKDILAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481
           + + +DD+SF  ++  P        + KI         + ++ IQ+           +  
Sbjct: 402 VSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAINGLSFFQAIQQVDFIGVSAKAANAL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
               + I  L ++  + S  +    IL   + R+   +    E     + +DEFL+ T  
Sbjct: 462 DSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAEKSIEAQSRLENIDEFLSVTKN 521

Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDT 593
            EQ +   +L   +++L       +           + + +MT+H AKGLE PVVFL+  
Sbjct: 522 FEQKSEDKTLVAFLTDLALIADIDQLDQKEEESGGKDAITLMTLHAAKGLEFPVVFLMGL 581

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF H                                                RL YV
Sbjct: 582 EEGVFPHSRSLMEEAEMEEE----------------------------------RRLAYV 607

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           G+TRA  +L +      +   ++N       +         +    L N   K E  A  
Sbjct: 608 GITRAEQELYLTNAKMRTLFGRTNMNPESRFIA-------EIPDDLLENLNEKKETRATS 660

Query: 714 WSTHHPENTPLEREET 729
                P   P+ R  +
Sbjct: 661 ARKMQPRRGPVSRPVS 676


>gi|256821959|ref|YP_003145922.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
 gi|256795498|gb|ACV26154.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
          Length = 1138

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 157/882 (17%), Positives = 314/882 (35%), Gaps = 83/882 (9%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK----------MFKSTLASLTLAKYLNAH 136
            + I K   D   ++     E+    +     +           ++   +   L +   AH
Sbjct: 307  KAIIKLKKDEAAEVMAELAEYSAFVEHMAIVRNFPNIHYQDDEWEVIESLTELMRIATAH 366

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
                 K+  V+DF ++ +  +  L   D  + +  K+D  I+HIL+DE QDTS  Q+++I
Sbjct: 367  LTIEFKRQGVVDFTEISMAADRALGNIDAPSELALKLDYGISHILVDEFQDTSYGQYQLI 426

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
              LT  +          RTLF VGD  QSIY F  A     ++ +            +  
Sbjct: 427  EKLTAGWQADDG-----RTLFVVGDPMQSIYRFREANVGLFIQARDH-----GIGDIRLE 476

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
             ++L  +FRS+  ++  V+K F+    +   +     ++   ++        ++  ++  
Sbjct: 477  FLQLTSNFRSSETVVNWVNKSFANIFPSYDDAVLGAVSLAEATATKDSSDEDKVDFKIFF 536

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              DS         + Y        +A+  A  IA  I  ++                +DI
Sbjct: 537  GDDSNSPG-----SDYDSEETITDAATQEANYIAEQIEVLLKEQPE-----------QDI 580

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             VLVR R     I    +       I+ V  +   L +  ++ D++ L R ++   D ++
Sbjct: 581  AVLVRARNHGVAIIEALQ----QRAIAYVAEEFEELAEKQSVLDVLTLLRVLIHPHDKVA 636

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETE----TVYEYIQKFANCGISKFQHVIKYIHELI 492
            ++ +LKSP F  +  D+  I +   +      T Y  +   +   +S  +     + +  
Sbjct: 637  WMALLKSPWFGLTLTDMSLIESVFGDEVYRVLTDYPAVDGLSLQAVSALEKQGAILEKHR 696

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
                          +     G      + G   I+ +  FL+F    EQN    + +   
Sbjct: 697  WQLYQQPLAIQLEALWLHLGG--ALSCQPGE--IEQVYTFLDFVSGYEQNQI--ITDYNP 750

Query: 553  ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
             L             +H  V IMT+H +KGLE   VFL        ++     +      
Sbjct: 751  LLLAMSKLHAPPSREDHCRVSIMTMHKSKGLEFDTVFLPQLNKGSGNNDKQLMVWEEFPA 810

Query: 613  NDDPGIPIWIPQSK--SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             DD    +  P  +    N++   +    ++  + E  RLLYV  TRA  +L +      
Sbjct: 811  QDDSSQYLMAPVDQVGESNSLYKFVNDFSRQKNRLESGRLLYVASTRAKRRLFLTCCGAV 870

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            S  +K  +       +DS  N  R           + E +  E +     ++    + + 
Sbjct: 871  SYNQKEERLKVGSFGHDSLMNLLRPIYETFI----ESEVLRLELNEEADHSSEQILDHSW 926

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
            ++L          +  + +       L         +  +E   + +     G+++H+ L
Sbjct: 927  QRLKA-----DWSYPKLSDSFKGIKSLLEKNSIIAEQATIEFDWATDVAKTIGVLMHRQL 981

Query: 791  QVIFTL-----PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR----LLENPMMTTAM 841
            ++I         +  R      Y    +  +  K  +     I +    +L +P     +
Sbjct: 982  ELISKGLWQLNQQSIRDYAAAMYEQLLSSGYNEKNARYAQQRIEQGLTNVLNDPKAQWIL 1041

Query: 842  SCDSY---SEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIE--- 894
            S        E++++G ++   K  +    ID+  +  +   +I +YKT  H+  +I    
Sbjct: 1042 SAQHQDSACELALTGVVDGEYKAFV----IDRTFVDEEGTRWIVDYKTGSHLGDDIAGFI 1097

Query: 895  -HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                  + AQL  Y+ ++      + +   L +    +   +
Sbjct: 1098 QSEKERYQAQLEQYKTLMAQID-QRPIKLALYFPMMKRFEEL 1138


>gi|311067135|ref|YP_003972058.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942]
 gi|310867652|gb|ADP31127.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942]
          Length = 739

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 125/757 (16%), Positives = 242/757 (31%), Gaps = 145/757 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++ +++            
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMKERVESILGPGADDIWIST 91

Query: 66  FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +  +  + I+ K  D +  L      
Sbjct: 92  FHSMCVRILRRDIDRIGINRNFSILDTSDQLSVIKGILKERNIDPKKFDPRSMLGSISSA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++ D     K          +   +   Y++   KN  LDF+DLI+ T  L  +    
Sbjct: 152 KNELIDPEEYAKSAGGYYD--QVVSDVYTDYQKKLLKNQSLDFDDLIMTTIKLFDR---V 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ +++ + + F          + +  VGD  QSI
Sbjct: 207 PEVLEFYQRKFQYIHVDEYQDTNRAQYLLVKQMAKRF----------QNICVVGDSDQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++             S+I L  ++RST  IL   ++V     N + 
Sbjct: 257 YRWRGADIANILSFEKDYPN--------ASVILLEQNYRSTKRILHAANEVIKNNSNRKP 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW           +  + S+    +   +        
Sbjct: 309 KN---------------------LW-------TENDDGIKISYYRGDNEFGEG------- 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +A  I  +  +            +  DI +L R    + +I            ++   
Sbjct: 334 QFVAGKIHQLSSSGKR---------RLSDIAILYRTNAQSRVIEETL----LKAGLNYNI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R + + +DD+SF  ++  P        + KI         +
Sbjct: 381 VGGTKFYDRKEIKDILAYLRLVSNPDDDISFNRIVNVPKRGVGATSMNKIAEYAAMNGMS 440

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +++ + +           +      + I  L ++  + S  +    IL   + R+   + 
Sbjct: 441 LFQALGQVDFIGVSAKAANALDSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEV 572
              E     + +DEFL+ T   EQ +   +L   +++L       +           + V
Sbjct: 501 KSIEAQSRLENIDEFLSVTKNFEQKSEDKTLVAFLTDLALIADIDQLDQQEEESGTNDAV 560

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFL+     VF H                                
Sbjct: 561 TLMTLHAAKGLEFPVVFLMGLEEGVFPHSRSLMEEAEMEEE------------------- 601

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                           RL YVG+TRA  +L +      +   ++N       +       
Sbjct: 602 ---------------RRLAYVGITRAEQELYLSNAKMRTLFGRTNMNPESRFIS------ 640

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
             +    L N   K E  A       P   P+ R  +
Sbjct: 641 -EIPDELLENLNEKKETRAASARKMQPRRGPVSRPVS 676


>gi|238917480|ref|YP_002930997.1| hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750]
 gi|238872840|gb|ACR72550.1| Hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750]
          Length = 822

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 114/625 (18%), Positives = 206/625 (32%), Gaps = 127/625 (20%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA----SLTLAKYLNAHYEEAKK 142
           +++N  +  LKE+      +    +D   T   F+           +A  +   Y++  K
Sbjct: 124 KKMNIDTKMLKER--AIMSKISSAKDELKTPDEFELEAGNDYNLRRIAG-VYREYQKTLK 180

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            N  LDF+DLI  T +L +     A +         +I++DE QDT+  Q++++  L   
Sbjct: 181 LNNALDFDDLIFKTVELFQSD---AEVLEHYQDRFRYIMVDEYQDTNTSQFKLVAMLAAK 237

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
           +            +  VGD+ QSIY F GA    +L  + +             +I+L  
Sbjct: 238 Y----------GNICVVGDDDQSIYKFRGANIYNILNFENVF--------TGAKVIKLEQ 279

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RST  IL   + V S     +  S                     LW           
Sbjct: 280 NYRSTQTILNAANAVISNNIGRKSKS---------------------LW-------TDNG 311

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             ++ ++T Y +   +       A  +A  I+  +                 D+ +L R 
Sbjct: 312 EGEKVNYTLYENGYDE-------AEGVASGIAEYVRDG----------WNYNDVAILYRT 354

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +  +          + I               IKD++A  + I +  D  +   ++ 
Sbjct: 355 NAQSRALEEKL----MIHNIPYKIYGGQNFYQRKEIKDILAYLKTIDNGLDGQAVKRIIN 410

Query: 443 SPLFNFSEDDIFKICTQRH-ETETVYEY------IQKFANCGISKFQHVIKYIHELIHIA 495
            P        I ++         T +E       I    N  +SK +  +  I  L    
Sbjct: 411 VPKRGIGNTTIDRLQEYADFNDITFWEALVNAKDIDTIKNAALSKLEPFVDLIGRLRAKE 470

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLRNEQN-----SYSS 546
           +F S  +    ++      +        E      + LDEF+N  +  E++        +
Sbjct: 471 EFMSLKELAEAVIEDTGYIESLSQNETVEEVEARRENLDEFINKVVSYEESCKEAGEEPT 530

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L  L+ E+           S  H  V +MT+H+AKGLE P+V++      +F        
Sbjct: 531 LSGLLEEVALIADIDNLDESEPH--VMLMTLHSAKGLEFPIVYMTGMEDGLFPSYMT--- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                        I     +  EE  RL YVG+TRA   L +  
Sbjct: 586 -----------------------------IVSDDSTEIEEERRLCYVGITRAEKILNLTS 616

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHN 691
             +     ++        + +   +
Sbjct: 617 AKSRMVRGETQMNKVSRFINEIPKD 641


>gi|154685156|ref|YP_001420317.1| PcrA [Bacillus amyloliquefaciens FZB42]
 gi|154351007|gb|ABS73086.1| PcrA [Bacillus amyloliquefaciens FZB42]
          Length = 739

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 119/734 (16%), Positives = 233/734 (31%), Gaps = 134/734 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++ +++      +     
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMKERVESILGPGADEIWIST 91

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---------------FIKI 110
           F  +    L +            I   +  L       ++                    
Sbjct: 92  FHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGILKERNIDPKKFDPRSILGSISSA 151

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++     + F  T       +   +   Y++   KN  LDF+DLI+ T  L ++      
Sbjct: 152 KNELIEPEEFAKTAGGYYDQVTSDVYTDYQKKLLKNQSLDFDDLIMTTIKLFER---VPE 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ +++ L                +  VGD  QSIY 
Sbjct: 209 VLEFYQRKFQYIHVDEYQDTNRAQYLLVKQLAARLE----------NICVVGDSDQSIYR 258

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++             ++I L  ++RST  IL   ++V     N +  +
Sbjct: 259 WRGADIANILSFEKDYP--------SANVILLEQNYRSTKRILQAANEVIKNNSNRKPKN 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + S+ S  +   +        + 
Sbjct: 311 ---------------------LW-------TENDEGIKLSYYSGDNEFGEG-------QF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I  +  +            +  DI +L R    + +I            ++     
Sbjct: 336 VAGKIYELHSSGRR---------KLSDIAILYRTNAQSRVIEETL----LKSGLNYNIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKD++A  R + + +DD+SF  ++  P        + KI         +++
Sbjct: 383 GTKFYDRKEIKDILAYLRLVSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAMNGMSMF 442

Query: 468 EYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + I++           +        I  L ++  + S  +    IL   + R+   +   
Sbjct: 443 QAIKQVDFIGVSAKAANALDGFGAMIENLTNMQDYLSITELTEEILEKTEYREMLKAEKS 502

Query: 523 NEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRI 574
            E     + +DEFL+ T   EQ +   SL   +++L       +           + V +
Sbjct: 503 IEAQSRLENIDEFLSVTKNFEQKSEDKSLVAFLTDLALIADIDQLDQKEEESGGKDAVTL 562

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE PVVFL+     VF H                                  
Sbjct: 563 MTLHAAKGLEFPVVFLMGMEEGVFPHSRSLMEEAEMEEE--------------------- 601

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                         RL YVG+TRA ++L +      +   ++N       + +   +   
Sbjct: 602 -------------RRLAYVGITRAEEELYLTNAKMRTLFGRTNMNPESRFIREIPGDLLE 648

Query: 695 VKKIKLTNSINKDE 708
               K T  +    
Sbjct: 649 NLNEKKTPRMQPGR 662


>gi|222151885|ref|YP_002561045.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402]
 gi|222121014|dbj|BAH18349.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402]
          Length = 721

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 116/724 (16%), Positives = 232/724 (32%), Gaps = 130/724 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    VS                + ++ + +            
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKDVSPYKILAITFTNKAAKEMKERVKKIIGDESDVIWIST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK+               E   +
Sbjct: 88  FHSMCVRILRRDIDRIGIERNFTILDPTDQRSVVKDILKRENIDPKKYDPRMFVAEISNL 147

Query: 111 RDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   +        +     +   + A Y+    KN  LDF+DLI+ T  L ++      
Sbjct: 148 KNEMKSPDDAIEAASDFMGMMISKVYAEYQRVLLKNHALDFDDLIMTTIQLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ +++ L + F          + +  VGD  QSIY 
Sbjct: 205 VLDYYQSKFQYIHVDEYQDTNRAQYLLVKMLADKF----------KNICVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  +           ++   I L  ++RST +IL   ++V       +  +
Sbjct: 255 WRGADIYNILSFEDDY--------KEAKTIFLERNYRSTKNILFAANEVIKNNTERKPKA 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW           +  + ++        +       A  
Sbjct: 307 ---------------------LW-------TDNDHGSKINYYKAMSERAE-------AEY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I             K+      D+ +L R    + +I            IS     
Sbjct: 332 IVAEI----------LKKKRENYALSDMAILYRTNAQSRVIEETL----MKSNISYTMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKDL++  R + +  +D+SF  ++ +P        + KI     H   + +
Sbjct: 378 GTKFYDRKEIKDLLSYLRLVANSNEDISFTRIINTPKRGIGPGALDKIITYAEHNGLSYF 437

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +            K       +  L+   +F S  +   ++L      +   +   
Sbjct: 438 DALAEVDFIGLPKKTTEKLVEFYTMMDNLMKQQEFLSITELTQMLLDKSGYMKMLEAENT 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    I+ + EF+N     E+++    Q LI+ L          ++     V +MT+H+
Sbjct: 498 LESQSRIENIQEFMNVPKDYEKDTPVEEQSLINFLTDLQLVADVDNADLEAGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE  VVF+      +F H                                       
Sbjct: 558 AKGLEFKVVFIAGLEESIFPHSRSLNS--------------------------------- 584

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             S  EE  RL+YV +TRA + L +      +   ++        + +   +   V   +
Sbjct: 585 -DSEMEEERRLMYVAITRAEEHLYLSHAEMRNLFGRTQANKKSRFISEIPEDILDVPVAR 643

Query: 700 LTNS 703
              +
Sbjct: 644 KIPA 647


>gi|328957929|ref|YP_004375315.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4]
 gi|328674253|gb|AEB30299.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4]
          Length = 748

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 114/708 (16%), Positives = 233/708 (32%), Gaps = 132/708 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L +   +      
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAKEMKERVTRLMKEGGSDVWVST 90

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +                 F     + Q+ ++ + + +++ D K+   +    E    
Sbjct: 91  FHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILKERNIDPKKYNPRAILGEISNA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++  +T   ++    S    +       Y+   ++N  +DF+DLI+    L K+   +  
Sbjct: 151 KNELDTPVDYRKRAGSFFEKIVADCYDDYQRELRRNQAVDFDDLIMLAIRLFKESPET-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L E F          + L  VGD  QSIY 
Sbjct: 209 -LDYYQNKFHYIHVDEYQDTNEAQYTLVNMLAERF----------KNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++             + + L  ++RST  IL   + V       +   
Sbjct: 258 WRGANMENILNFEKDYP--------DATTVLLEQNYRSTKFILQAANDVIGNNSKRKVKK 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW           + ++ ++        +  S    +R 
Sbjct: 310 ---------------------LW-------TDNHDGEKITYY-------RGQSEGDESRY 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +                 D  VL R    + +I            I      
Sbjct: 335 VISKIQEEMKE---------NNYNYGDFAVLYRTNAQSRVIEDSL----LKSNIPYKMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET--- 465
                D   I+D++A  R I + +D++SF  ++  P        I K+ T  ++ +    
Sbjct: 382 GHKFYDRKEIRDVLAYLRLIANPDDNMSFERVVNVPKRGIGPGTIEKLRTSSNQYDWSLL 441

Query: 466 ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              +   I   +    S+ +     + +L  + ++    +    +L     ++       
Sbjct: 442 ETALNVSITPISGKAASELEGFGFMMKDLRQMQEYVPVTELVEEVLKRSGYQKSLELERT 501

Query: 523 NE---VIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
            E    ++ + EFL  T + E+      SL   +++L               +EV +MT+
Sbjct: 502 LESETRLENIQEFLTVTQQFEKENTEDKSLLTFLTDLALVSDLDNLE-EEPQSEVTLMTL 560

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE P+VFL+     +F                                       
Sbjct: 561 HAAKGLEFPIVFLIGLEEGIFPLS----------------------------------RS 586

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            +++   EE  RL YVG+TRA  +L I    +     ++   +    +
Sbjct: 587 MMEEDQLEEERRLAYVGITRAEKKLYITNAYSRVLYGRTQSNSASRFI 634


>gi|227514157|ref|ZP_03944206.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum
            ATCC 14931]
 gi|227087528|gb|EEI22840.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum
            ATCC 14931]
          Length = 1337

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 155/1143 (13%), Positives = 319/1143 (27%), Gaps = 227/1143 (19%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
              G    +S     + L PL   Q+ ++    +   E G     ++ +       T   +
Sbjct: 202  EEGADPRQSAF-FKRLLEPLVGPQLKELRDQWAALGEVGPARFAEQIEEDLAKLATTVDD 260

Query: 64   E-----RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIRDRFNTY 117
            +      +  L+     + F P+      + + +  D     +   +D+   + D +   
Sbjct: 261  QGHLLGSWDSLAQTLNKKNFAPKLRKRKDDDDPELLDELGVQRGGLRDQLGDLHDTYFFQ 320

Query: 118  KMFKST----------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR---- 163
                                 +A     HY+  K+   +LDF DL      +L       
Sbjct: 321  SAADLVKYGQKAGALIEILTRVATDFRCHYQIIKQDRRLLDFSDLEHYAYAILTGENINP 380

Query: 164  -------------DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
                           +A ++ ++ +    I+IDE QDT+ +         +D  +     
Sbjct: 381  KVTWSDEEAWAKRQAAAQVQAELQRHYKEIMIDEYQDTNRL---------QDDLLRLLHK 431

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
            S     F VGD KQSIY F  A+P                 GQ    ++L  ++RS  ++
Sbjct: 432  SGQNHRFMVGDMKQSIYRFRQADPTLFKDYYDQFSAD----GQSSEALDLSDNYRSRHEV 487

Query: 271  LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-SQCNPQQESW 329
              +V+ +F    + Q            +          Q                +  + 
Sbjct: 488  TDLVNLIFEQLMDQQLGEMVYDDKASLKPKADWGADRDQASPATPELLLFDGGVKKTTAN 547

Query: 330  TSYFDSLPQESSASILA---RRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRK 384
             +  D++        +A     I   I  ++  +TI      + R I   DI +L R ++
Sbjct: 548  PTGEDAIVVRQPEDKVASEVWLIGQRIRELLAKETILDPETKRVRPITPGDIAILSRAKR 607

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                I  +         + V+ +          I+ +M+L + I +   D+    +L+SP
Sbjct: 608  ----IHSVIAEQFAKLNLPVMVHGVENYFKATEIRVVMSLLKVIDNPYQDVPLAAVLRSP 663

Query: 445  L-------------------FNFSEDDIFKI--------------CTQRHETETVYEYIQ 471
            L                     F+E ++  +                     +   E ++
Sbjct: 664  LIQVAPEVAAKFGLSQGENRIGFTEPELAYLKVNSTSKDFFGVVQQNYYAWRDQEVEAVE 723

Query: 472  KFANCGISKFQH----------------------------VIKYIHELIHIAQFCSPHDF 503
                    +                                 +    L  +AQ     D 
Sbjct: 724  NHDALTEEELAERVAGDPAGLATKEELGVNCGLIYLKLARFFELRDHLRRVAQRRPLVDL 783

Query: 504  FTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I  A            G +    L          E++ +  L + I  +EQ      
Sbjct: 784  IWTIYQATGYLDYVGGMSGGPQRQANLHALYERASGYEESGFKGLYQFIHFIEQMQKKND 843

Query: 563  RAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND--DP 616
                A      + + +MT+H +KGL+ P+VFLV+T  Q  + +    +     L      
Sbjct: 844  DLGEATTALAGDAINVMTIHKSKGLQFPIVFLVETTHQFQADRDPVTIEPQAGLGFTYVD 903

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN---- 672
                   + K      + L +  K+  + E  RLLYV +TRA  +L I  +   ++    
Sbjct: 904  STANETMRVKHPLVQQAALKEKKKRQDRAEEMRLLYVALTRAEQRLFITGYVKDADLTKK 963

Query: 673  -----------------EKKSNQRTWYDMVYDSFHNDERVKKIKL--------------- 700
                               +   ++  D +  +         ++                
Sbjct: 964  MDKWNRAFDSASPLLTTTTRLKGQSMLDWIMMTLVRTANFPTLREGVEAAAAPLRGLTKA 1023

Query: 701  --------TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                     + +        +   +           T +Q   + +       P +    
Sbjct: 1024 AYQIKLQNADQVQAALNTPLDLHPNATAEQATPAAATSRQFKADLERVLNFTYPDQVATQ 1083

Query: 753  EPYILNPSTIDTKGKTNLESLLS------------------------------------- 775
                   ST+         + L                                      
Sbjct: 1084 TTAFQAVSTVREAFARQDPTNLEMGRLEIDRDQIKESGAYLAPEERAFENPAFITGASDQ 1143

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKN--FITSYCTKNAKLWPAKEYKNL-LLSITRLL 832
            +      G   H + Q +             +    T++  +   +    + +  +    
Sbjct: 1144 EPTGTAIGTATHLIFQKLPLTEPLDEGAVRALIKSLTESGLIDNPQVAAGIDVAGVVSFY 1203

Query: 833  ENPMMTTAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFI 880
            +  +     +     + EV  S  ++              +++I G ID        I +
Sbjct: 1204 QTGLGQVITAHPEQVHREVPFSMLLSAHDLFSGIGATDDSEVLIHGIIDGYVQHDDQIDL 1263

Query: 881  FEYKTHH----HVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFI 934
            F+YKT      H  ++++ +   +  QL +Y   L      P + +   L +    +V  
Sbjct: 1264 FDYKTDRISQAHPEEDLQELADKYSGQLVLYADALTKMTGVPLEKIHRHLYFTRAKRVVT 1323

Query: 935  IPQ 937
            +  
Sbjct: 1324 LSA 1326


>gi|327438551|dbj|BAK14916.1| superfamily I DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 752

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 104/622 (16%), Positives = 207/622 (33%), Gaps = 117/622 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y++  ++N  LDF+DLI+ T  L K+   +  +      +  +I +DE QD
Sbjct: 174 KIVAQVYKGYQKRLRQNQSLDFDDLIMLTIRLFKE---APDVLEFYQNKFQYIHVDEYQD 230

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L + F          R +  VGD  QSIY + GA+   +L  ++     
Sbjct: 231 TNKSQYLLVQLLAKKF----------RNICVVGDSDQSIYRWRGADISNILSFEKDY--- 277

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                ++  +I L  ++RST  IL   + V    ++                        
Sbjct: 278 -----KEAKVIMLEQNYRSTKRILQAANSVIEKNKDRYKKVL------------------ 314

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            +        +   +       A+ +  TI  ++  +       
Sbjct: 315 ----------RTENPEGEMIQLYKAGNEQDE-------AQYVVRTIQKLMKDE------- 350

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    + ++  +         ++          D   IKDL+A  R 
Sbjct: 351 --DYKLDDFAILYRTNAQSRVMEDVL----VKSNMNYQIVGGTKFYDRKEIKDLLAYLRL 404

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGIS-----KF 481
           I + +DDLS   ++  P          K +        ++++ + +    G+S       
Sbjct: 405 IANNDDDLSLARIINEPKRAIGATSFDKMLVYAMERDRSIFDAMGELVFMGLSGKAATSA 464

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           ++    I  L    +  S  +    +L     RQ   +    E     + ++EFL  T  
Sbjct: 465 ENFYNMIRSLSDRQRELSVTEIVEEVLERSGYRQMLKAEKSIEAESRLENIEEFLTVTQA 524

Query: 539 NE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            E ++   SL   +++L                  + +MT+H AKGLE PVVF++     
Sbjct: 525 FEARSEDQSLVAFLTDLALIADIDSLDEEEKAKGTIILMTMHAAKGLEFPVVFIIGMEEN 584

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H                                        +    E  RL+YVG T
Sbjct: 585 IFPHSRSL----------------------------------ESEDEMAEERRLMYVGAT 610

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA  +L +    + +   ++        +      DE V +     +       +  + +
Sbjct: 611 RAEQRLYLSCAGSRTIFGRTGYNAPSRFLR---EIDENVLEQVSKANTTSYRDDSLPFKS 667

Query: 717 HHPENTPLEREETIKQLMDEQK 738
           +  +  P     +++    +  
Sbjct: 668 NRYDRMPNRSLGSVQAPASQTS 689


>gi|189485729|ref|YP_001956670.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287688|dbj|BAG14209.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 772

 Score =  311 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 104/671 (15%), Positives = 214/671 (31%), Gaps = 125/671 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y++  ++   +DF DLI+ T   L++    + +     ++  +I++DE QDT+
Sbjct: 172 VAKIYELYQKKLERADAMDFGDLIMRTVSALQRH---SELLEYYREKYKYIMVDEYQDTN 228

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+  I+ L   +            +  VGD+ QS+YS+ GA+   +L  ++       
Sbjct: 229 HAQYIFIKLLAGKY----------HNVCVVGDDDQSVYSWRGADINNILDFEKDYPN--- 275

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   ++L  ++RST  IL+  ++V             +              G+V 
Sbjct: 276 -----AKSVKLEQNYRSTPKILSTANQVVKYNNARISKRLWTQNP---------DNGSVT 321

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           + + V    +                              A  I+ +I     +SN    
Sbjct: 322 VLKAVNENDE------------------------------AVKIAELI-----YSNAYDN 346

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  D  V  R    +       R      +I           D   IKD++A  + I 
Sbjct: 347 KCKFSDYAVFYRTNAQSRTFEDTFR----LSRIPYAIVGTLRFYDRAEIKDVIAYLKLIY 402

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEY-----IQKFANCGISKFQH 483
           +  D++SF  ++  P     +  I  +      +  ++++                    
Sbjct: 403 NPNDNVSFKRVINIPRRGIGKTSIETLENFAQLKNMSIWQSVPFAQEAGLTKGPAEALNS 462

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRNE 540
             ++I +   +    S       ++   +  ++  +    E    I+ + E ++     E
Sbjct: 463 FAQFIKDFSTLKNSGSVKLIVEKVITDSEYLKELEAENTPESKIKIENIQELISAVDDFE 522

Query: 541 QNS--YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +N     SL   ++++             +  +V +MT+H AKGLE   VF+      +F
Sbjct: 523 KNRSLDKSLAGYLTQIALMNDADSPD--ESKGKVTLMTLHLAKGLEFDNVFICGLEEGLF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                         EE  RL+YVGMTRA
Sbjct: 581 PMG----------------------------------ESAFNDKELEEERRLMYVGMTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
              L +C  +      K         + ++   DE       +  + ++    ++     
Sbjct: 607 RKCLYLCWSTERKVYGKIIWNMPSRFIAEAGFKDE-------SAEMEQNRKQNFQNRLSQ 659

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST-IDTKGKTNLESLLSDN 777
             N  +   ++  +  + +   KK F       N       S+  +       ++   D 
Sbjct: 660 GFNRTIIHSDSFGREQNFRSFNKKSFKAEIVYTNAGSYGYMSSGGEITKAERFDNPAEDL 719

Query: 778 QTFNRGLII-H 787
             +  G  + H
Sbjct: 720 SPYKIGTAVSH 730


>gi|56418810|ref|YP_146128.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
 gi|56378652|dbj|BAD74560.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426]
          Length = 724

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 122/692 (17%), Positives = 229/692 (33%), Gaps = 137/692 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV+  N             + ++ Q L   +        
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVQALLGGAAEDVWIST 91

Query: 66  FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +  +  + I+ K  + +  L      
Sbjct: 92  FHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKDKNIDPKKFEPRTILATISGA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +       K  +++     +   +   Y++   +N  LDF+DLI+ T  L  +    
Sbjct: 152 KNDLLTPEQFAK--RASTYYEKIVGDVYQEYQQRLLRNHSLDFDDLIMTTIHLFDR---V 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +      +  +I IDE QDT+  Q+ +++ L + F          + + AVGD  QSI
Sbjct: 207 PDVLQYYQYKFQYIHIDEYQDTNRAQYTLVKKLADRF----------QNICAVGDADQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +R              +I L  ++RST  IL   ++V +   N + 
Sbjct: 257 YRWRGADIRNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIAHNVNRKP 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW             +   +    + + +       A
Sbjct: 309 KR---------------------LW-------TENPEGKPIVYYEAMNEVDE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +A  I   + +            + +D  VL R    + +I  +         I    
Sbjct: 334 QFVARRIQEAVESGER---------RYRDFAVLYRTNAQSRVIEEMF----LKANIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I + +DDLS + ++  P        I K+         +
Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAAEHELS 440

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++E + +                    + +   + ++    +    +L     R+   + 
Sbjct: 441 LFEALGELEMIGFSAKTAGALAAFRGQLEQWTQLQEYVPVTELVEEVLDQSGYREMLKAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573
              E     + LDEFL+ T   E  +   SL   +++L              +A  + V 
Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLVAFLTDLALISDLDELNGTDQAAEGDAVV 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MT+H AKGLE PVVFL+     +F H                                 
Sbjct: 561 FMTLHAAKGLEFPVVFLIGMEEGIFPH--------------------------------- 587

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
            L     +   EE  RL YVG+TRA ++L++ 
Sbjct: 588 -LRSLENEDEMEEERRLAYVGITRAEEELVLT 618


>gi|321314390|ref|YP_004206677.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5]
 gi|320020664|gb|ADV95650.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5]
          Length = 739

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 119/616 (19%), Positives = 208/616 (33%), Gaps = 124/616 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A Y++   KN  LDF+DLI+ T  L  +      +     ++  +I +DE QD
Sbjct: 171 QVVSDVYADYQKKLLKNQSLDFDDLIMTTIKLFDR---VPEVLEFYQRKFQYIHVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L E F          + L  VGD  QSIY + GA+   +L  ++     
Sbjct: 228 TNRAQYMLVKQLAERF----------QNLCVVGDSDQSIYRWRGADITNILSFEKDYPN- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   S+I L  ++RST  IL   ++V     N +  +                   
Sbjct: 277 -------ASVILLEQNYRSTKRILRAANEVIKNNSNRKPKN------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW              + S+    +   +        + +A  I  +  T        
Sbjct: 311 --LW-------TENDEGIKISYYRGDNEFGEG-------QFVAGKIHQLHSTGKR----- 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  DI +L R    + +I            ++          D   IKD++A  R 
Sbjct: 350 ----KLSDIAILYRTNAQSRVIEETL----LKAGLNYNIVGGTKFYDRKEIKDILAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481
           + + +DD+SF  ++  P        + KI         + ++ IQ+           +  
Sbjct: 402 VSNPDDDISFTRIVNVPKRGVGATSLEKIASYAAINGLSFFQAIQQVDFIGVSAKAANAL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
               + I  L ++  + S  +    IL   + R+   +    E     + +DEFL+ T  
Sbjct: 462 DSFRQMIENLTNMQDYLSITELTEEILDKTEYREMLKAEKSIEAQSRLENIDEFLSVTKN 521

Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDT 593
            EQ +   +L   +++L       +           + + +MT+H AKGLE PVVFL+  
Sbjct: 522 FEQKSEDKTLVAFLTDLALIADIDQLDQKEEESGGKDAITLMTLHAAKGLEFPVVFLMGL 581

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF H                                                RL YV
Sbjct: 582 EEGVFPHSRSLMEEAEMEEE----------------------------------RRLAYV 607

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           G+TRA  +L +      +   ++N       +         +    L N   K E  A  
Sbjct: 608 GITRAEQELYLTNAKMRTLFGRTNMNPESRFIA-------EIPDDLLENLNEKKETRATS 660

Query: 714 WSTHHPENTPLEREET 729
                P   P+ R  +
Sbjct: 661 ARKMQPRRGPVSRPVS 676


>gi|303240584|ref|ZP_07327099.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2]
 gi|302591821|gb|EFL61554.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2]
          Length = 739

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 106/614 (17%), Positives = 192/614 (31%), Gaps = 126/614 (20%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                  +    L +    +KN   + + +     K++L             F   K   
Sbjct: 112 DYTDQQTVVKDCLKELNLNEKNYPPKSMLEMIGRAKDELIDPVTYGKMYAADFRMAK--- 168

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                      +   Y++  K+N  +DF+D+I+ T  L         +     ++  +IL
Sbjct: 169 --------VAKIYELYQKKLKQNNAVDFDDIIMLTIKLFSNYPD---VLDYYQRKFKYIL 217

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+  Q+ +I  L++            R L  VGD+ QSIY + GA  + +L  +
Sbjct: 218 VDEYQDTNSAQYSLISMLSQ----------RSRNLCVVGDDDQSIYGWRGANIRNILDFE 267

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +               I+L  ++RST  IL   + V       +  S             
Sbjct: 268 KEF--------SGCKTIKLEQNYRSTQTILDAANCVIKNNYGRKNKS------------- 306

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW             ++       +   +       A  IA  I  +     
Sbjct: 307 --------LW-------TENKGGEKIRHCECSNEHEE-------AYFIANEIKKL----- 339

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                  + +Q KD  +L R    + ++  +         I+          D   IKDL
Sbjct: 340 ----STIKDMQYKDFAILYRVNAMSRVVEEML----IKEGIAYKIFGGLKFYDRKEIKDL 391

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-- 479
           +A  R I +  D++S    +  P        I       +        I   A+      
Sbjct: 392 IAYLRLIQNPSDNISLKRSINEPKRGIGTTTIETAERLANSKGVSIFSIISSASEIPDLA 451

Query: 480 ----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEF 532
               K +  +  I  L  + +     +    ++     ++ +      E     + + E 
Sbjct: 452 RAASKLEGFVAMISRLRILKESMKVSELIQEVIEQSGIQRSYEEEDTIEAQSRIENIKEL 511

Query: 533 LNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           ++  L  E +N   SL++ ++ +             N + V +MT+H+AKGLE PVVF+V
Sbjct: 512 VSVALEFEAKNEEQSLEDFLANVSLVADIDNMD--ENGDYVVLMTLHSAKGLEFPVVFMV 569

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +F                                                     
Sbjct: 570 GMEEGIFPGYRSMSDESELEEERRL----------------------------------C 595

Query: 652 YVGMTRASDQLIIC 665
           YVG+TRA  +L + 
Sbjct: 596 YVGITRAKQKLYLT 609


>gi|169825828|ref|YP_001695986.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41]
 gi|168990316|gb|ACA37856.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41]
          Length = 749

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 97/575 (16%), Positives = 194/575 (33%), Gaps = 114/575 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   YE+  ++N  LDF+DLI+ T  L K+      +      +  +I +DE QD
Sbjct: 174 QTVARVYKGYEKRLRRNQSLDFDDLIMTTITLFKR---VPEVLEYYQNKFQYIHVDEYQD 230

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L + F          + +  VGD  QSIY + GA+   +L  ++     
Sbjct: 231 TNKSQYLLVQLLAKKF----------KNICVVGDSDQSIYRWRGADIGNILSFEKDYPN- 279

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST  IL   + V                              
Sbjct: 280 -------AKVIMLEQNYRSTKRILQAANDVIQNNTTRYPKEL------------------ 314

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            ++ +    ++   +       A+ +  TI  ++  +       
Sbjct: 315 ----------RTENAEGEKIALYKAYNEQEE-------AQFVVQTIQQLMEKENR----- 352

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  +L R    + ++  +         +           D   IKDL+A  R 
Sbjct: 353 ----TFDDFAILYRTNAQSRVMEEVL----VKSNMVYQIVGGTKFYDRKEIKDLLAYLRL 404

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC-----GISKF 481
           I + +DDLS   ++  P  +       K+      +  ++++ +             +  
Sbjct: 405 IANNDDDLSLARIINEPKRSIGATSFEKMARYAIEQDRSIFDAMNDLIFMGLSGKAANSA 464

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +     I     + ++ S  +    ++     R    +    E     + ++EFL+ T  
Sbjct: 465 EQFYAMIKGFTEMQEYLSVTEIVEQVIDKSGYRTMLQNEKTIEAESRLENIEEFLSVTKA 524

Query: 539 N-EQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             E++   SL   +++L             A+   + +MT+H AKGLE P+VF++     
Sbjct: 525 FEERSDDKSLIAFLTDLALIADIDALDKEDASKGNIILMTMHAAKGLEFPIVFIIGMEEN 584

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H                                        +   EE  RL+YVG+T
Sbjct: 585 IFPHSRSLD----------------------------------DQDEMEEERRLMYVGVT 610

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           RA ++L +    + +   +S+       + +   +
Sbjct: 611 RAEERLYLTCAQSRTIFGRSSFNNASRFLGEISED 645


>gi|313893297|ref|ZP_07826872.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442193|gb|EFR60610.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 729

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 206/615 (33%), Gaps = 117/615 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +  +YE   +KN  LDF+DL++    LL+  +    +  K  +   +++IDE QDT+
Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSNEA---VLDKYSKRFRYVMIDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L   +          + +  VGD  QSIY++ GA+ + +L  ++       
Sbjct: 226 HAQYLLAKLLASHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 + I+L  ++RST  IL   + V    E     +                     
Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIENNEGRPKKN--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       D     + + +T+  +           A  I  TI+               
Sbjct: 307 LW------TDKTEGAKIQHFTAQSEHEE--------AAFIGDTIAKKHD---------IH 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D+ +L R    + ++            +  +        D   IKD++A  R + 
Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYIMVGGTKFYDRKEIKDVLAYLRVLY 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482
           +  DDLS + ++  P  +     + K+    R    +++  + +             K +
Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVAKLQDYARANGTSLFMTLTQLHLVDSIKGKTKEKLE 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
                I  L+   +  +  D    I+       Q       +     + + E L+     
Sbjct: 460 EFGILIFTLVAEMEDRTVLDILESIIDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519

Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +  + S  +++ + ++             +   V +MT+H AKGLE P+VFL      +F
Sbjct: 520 QDTNPSGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                      +     EE  RL YVG+TRA
Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717
             +L I   +  +   +++       + +      + ++  +      K     +   T 
Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPEELVDGLRAKRKVPDDIKRHVPQHMSVTS 663

Query: 718 HPENTPLEREETIKQ 732
            P   P+ R E I  
Sbjct: 664 RPVTKPIVRNEVIAD 678


>gi|269798061|ref|YP_003311961.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008]
 gi|282850288|ref|ZP_06259667.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745]
 gi|269094690|gb|ACZ24681.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008]
 gi|282579781|gb|EFB85185.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745]
          Length = 729

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 108/615 (17%), Positives = 204/615 (33%), Gaps = 117/615 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +  +YE   +KN  LDF+DL++    LL+     A +  K      +++IDE QDT+
Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSN---ATVLDKYSHRFRYVMIDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L   +          + +  VGD  QSIY++ GA+ + +L  ++       
Sbjct: 226 HAQYLLAKLLASHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 + I+L  ++RST  IL   + V    E     +                     
Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIDNNEGRPEKN--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       D     + + +T+  +           A  I  TI+               
Sbjct: 307 LW------TDKIEGAKIQHFTAQSEHEE--------AAFIGDTIAKKHD---------IH 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D+ +L R    + ++            +           D   IKD++A  R + 
Sbjct: 344 DVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482
           +  DDLS + ++  P  +     + K+    R +  +++  + +             K +
Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVAKLQDYAREKGTSLFMTLTQLHLIDSIKGKTKEKLE 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
                I  L+   +  +  D    IL       Q       +     + + E L+     
Sbjct: 460 EFGILIFTLVSEMEDKTVLDILESILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519

Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +  + S  +++ + ++                 V +MT+H AKGLE P+VFL      +F
Sbjct: 520 QDTNPSGTVEDFLEQVALVNDVDSFEQEEAK--VTLMTLHAAKGLEFPIVFLCGLEEGLF 577

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                      +     EE  RL YVG+TRA
Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717
             +L I   +  +   +++       + +      + ++  +      K     +   T 
Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPEELVDGLRAKRKVPDDIKRHVPQHMSVTS 663

Query: 718 HPENTPLEREETIKQ 732
            P   P+ R E I  
Sbjct: 664 RPVTKPIVRNEVIAD 678


>gi|260437266|ref|ZP_05791082.1| ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus DSM 2876]
 gi|292810576|gb|EFF69781.1| ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus DSM 2876]
          Length = 748

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 114/640 (17%), Positives = 197/640 (30%), Gaps = 115/640 (17%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y+E  KKN  +DF+D+I  T  L  +      +     +   +I++DE QDT+
Sbjct: 169 TAEIYREYQEQLKKNNAVDFDDIIGLTVKLFNED---KEVLRYYQERFRYIMVDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +IR L                L  VGD+ QSIY F GA+   +L  ++       
Sbjct: 226 RAQFNLIRLLAG----------GHGNLCVVGDDDQSIYKFRGADINNILDFEKYF----- 270

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  II+L  ++RST  IL V ++V       +                        
Sbjct: 271 ---NDAKIIKLEQNYRSTQKILDVANEVIKNNSGRKDKR--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW  V        N  +  +                AR IA  I++    D         
Sbjct: 307 LWTSVKDGTKVIFNVYENGY--------------EEARGIAEDIAHRHLHDRK------- 345

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D  +L R    +  +         +  I               IKD++A  + I 
Sbjct: 346 --DYSDFAILYRTNAQSRSLEEKL----IEKNIPYRIYGGINFYARREIKDILAYLKTID 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQH 483
           +  DDL+   +L  P        + K+    +E +  +    + A          SK + 
Sbjct: 400 NARDDLAVKRILNVPKRGIGAASVAKVDDYAYENDITFYVALRQAKEVPGLQRAVSKVEG 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-----ISRFGNEVIDVLDEFLNFTLR 538
            +  I  L   +Q+         I+                    E    +DE ++  ++
Sbjct: 460 FVTQIEILKSKSQYIGVGKLIEEIIETVGYSDYIDAESESDEQATERRQNIDELISKAVQ 519

Query: 539 NEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            E+     SL   + E+             N++ V +MT+H+AKGLE P+V+L      +
Sbjct: 520 YEETVDEPSLSGFLEEVALVADIDN--LDENNDMVSLMTIHSAKGLEFPIVYLAGMEDGL 577

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                     I    +S  EE  RL YVG+TR
Sbjct: 578 FPSYMS--------------------------------ISTGDESDIEEERRLCYVGITR 605

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A + LI+      +   ++        V +            L  +         +    
Sbjct: 606 AKETLIMSAARMRTVRGETQMNRTSRFVREIPKELLAESAQMLKKNSEYSSITGKDHMEL 665

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
                      + ++      +  K      + +    + 
Sbjct: 666 PVRKRGQVAFNSYQREAISNTVFDKKTDSAPDYVVGDRVR 705


>gi|184154513|ref|YP_001842853.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956]
 gi|251764528|sp|B2GEY4|ADDA_LACF3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|183225857|dbj|BAG26373.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956]
          Length = 1337

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 154/1143 (13%), Positives = 320/1143 (27%), Gaps = 227/1143 (19%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
              G    +S     + L PL   Q+ ++    +   E G     ++ +       T   +
Sbjct: 202  EEGADPRQSAF-FKRLLEPLVGPQLKELRDQWAALGEVGPARFAEQVEEDLAKLATTVDD 260

Query: 64   E-----RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIRDRFNTY 117
            +      +  L+     + F P+      + + +  D     +   +D+   + D +   
Sbjct: 261  QGHLLGSWDSLAQTLNKKNFAPKLRKRKDDDDPELLDELGVQRGGLRDQLGDLHDTYFFQ 320

Query: 118  KMFKST----------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                                 +A     HY+  K+   +LDF DL      +L   +++ 
Sbjct: 321  SAADLVKYGQKAGALIEILTRVATDFRCHYQIIKQDRRLLDFSDLEHYAYAILTGENINP 380

Query: 168  -----------------WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
                              ++ ++ +    I+IDE QDT+ +         +D  +     
Sbjct: 381  KVTWSDEEARAKRQAAAQVQAELQRHYKEIMIDEYQDTNRL---------QDDLLRLLHK 431

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
            S     F VGD KQSIY F  A+P                 GQ    ++L  ++RS  ++
Sbjct: 432  SGQNHRFMVGDMKQSIYRFRQADPTLFKDYYDQFSAD----GQSSEALDLSDNYRSRHEV 487

Query: 271  LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-SQCNPQQESW 329
              +V+ +F    + Q            +          Q                +  + 
Sbjct: 488  TDLVNLIFEQLMDQQLGEMVYDDKASLKPKADWGADRDQASPATPELLLFDGGVKKTTAN 547

Query: 330  TSYFDSLPQESSASILA---RRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRK 384
             +  D++        +A     I   I  ++  +TI      + R I   DI +L R ++
Sbjct: 548  PTGEDAIVVRQPEDKVASEVWLIGQRIRELLAKETILDPETKRVRPITPGDIAILSRAKR 607

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                I  +         + V+ +          I+ +M+L + I +   D+    +L+SP
Sbjct: 608  ----IHSVIAEQFAKLNLPVMVHGVENYFKATEIRVVMSLLKVIDNPYQDVPLAAVLRSP 663

Query: 445  L-------------------FNFSEDDIFKI--------------CTQRHETETVYEYIQ 471
            L                     F+E ++  +                     +   E ++
Sbjct: 664  LIQVAPEVAAKFGLSQGENRIGFTEPELAYLKVNSTSKDFFGVVQQNYYAWRDQEVEAVE 723

Query: 472  KFANCGISKFQH----------------------------VIKYIHELIHIAQFCSPHDF 503
                    +                                 +    L  +AQ     D 
Sbjct: 724  NHDALTEEELAERVAGDPAGLATKEELGVNCGLIYLKLARFFELRDHLRRVAQRRPLVDL 783

Query: 504  FTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I  A            G +    L          E++ +  L + I  +EQ      
Sbjct: 784  IWTIYQATGYLDYVGGMSGGPQRQANLHALYERASGYEESGFKGLYQFIHFIEQMQKKND 843

Query: 563  RAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND--DP 616
                A      + + +MT+H +KGL+ P+VFLV+T  Q  + +    +     L      
Sbjct: 844  DLGEATTALAGDAINVMTIHKSKGLQFPIVFLVETTHQFQADRDPVTIEPQAGLGFTYVD 903

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN---- 672
                   + K      + L +  K+  + E  RLLYV +TRA  +L I  +   ++    
Sbjct: 904  STANETMRVKHPLVQQAALKEKKKRQDRAEEMRLLYVALTRAEQRLFITGYVKDADLTKK 963

Query: 673  -----------------EKKSNQRTWYDMVYDSFHNDERVKKIKL--------------- 700
                               +   ++  D +  +         ++                
Sbjct: 964  MDKWNRAFDSASPLLTTTTRLKGQSMLDWIMMTLVRTANFPTLREGVEAAATPLRGLTKA 1023

Query: 701  --------TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                     + +        +   +           T +Q   + +       P +    
Sbjct: 1024 AYQIKLQNADQVQAALNTPLDLHPNATAEQATPAAATSRQFKADLERVLNFTYPDQVATQ 1083

Query: 753  EPYILNPSTIDTKGKTNLESLLS------------------------------------- 775
                   ST+         + L                                      
Sbjct: 1084 TTAFQAVSTVREAFARQDPTNLEMGRLEIDRDQIKEAGAYLAPEERAFENPAFITGASDQ 1143

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKN--FITSYCTKNAKLWPAKEYKNL-LLSITRLL 832
            +      G   H + Q +             +    T++  +   +    + +  +    
Sbjct: 1144 EPTGTAIGTATHLVFQKLPLTEPLDEGAVRALIKSLTESGLIDNPQVAAGIDVAGVVSFY 1203

Query: 833  ENPMMTTAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFI 880
            +  +     +     + EV  S  ++              +++I G ID        I +
Sbjct: 1204 QTGLGQVITAHPEQVHREVPFSMLLSAHDLFSGIGATDDSEVLIHGIIDGYVQHDDQIDL 1263

Query: 881  FEYKTHH----HVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFI 934
            F+YKT      H  ++++ +   +  QL +Y   L      P + +   L +    +V  
Sbjct: 1264 FDYKTDRISQAHPEEDLQELADKYSGQLVLYADALTKMTGVPLEKIHRHLYFTRAKRVVT 1323

Query: 935  IPQ 937
            +  
Sbjct: 1324 LSA 1326


>gi|220931077|ref|YP_002507985.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168]
 gi|219992387|gb|ACL68990.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168]
          Length = 715

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 117/734 (15%), Positives = 235/734 (32%), Gaps = 136/734 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +  + V+ +              + ++   L            
Sbjct: 32  GAGSGKTRVLTHRIAYLIENYGVNPLQILAVTFTNKAAGEMKERVDNLLGGMAGDLWVST 91

Query: 66  FSLLSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L +  L ++        N +  + + +   +   LK+   +  K R R    ++ ++
Sbjct: 92  FHSLCARILRKEIGKIGYDNNFVIFDTDDQQKLISRILKELNLDPKKTRPRAILSEISRA 151

Query: 123 TLASLT--------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               +               +   +   Y+E  K++  LDF+DLI+ T ++     +   
Sbjct: 152 KNELIDPRSYANNVGDYFQDITARIYPLYQERLKESNALDFDDLIMKTIEVFVDNPM--- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     +   +IL+DE QD +  Q+++++ L           +  R L  VGD  Q IY 
Sbjct: 209 VLEYYQERFKYILVDEYQDVNFAQYKLVQLLA----------NKYRNLCVVGDPDQGIYG 258

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F GA+ + +L  +    +          +I+L  ++RS   IL     V       +   
Sbjct: 259 FRGADIRNILNFEEDYPE--------ARVIKLEQNYRSKEKILKAAHHVIRNNTARKEKR 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         +   +       FD   +       A  
Sbjct: 311 ---------------------LW-------TKRGKGEDLKLYVAFDDKDE-------ASY 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I  +            +  +  D  VL R    +  +  +       Y I      
Sbjct: 336 VCRKIKELKRE---------KNYKFSDFAVLYRTNSQSRSVEEMM----VKYAIPYQIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
            F   D + IKD++A  R I +  D++S + ++  P     +  I K+    R    ++Y
Sbjct: 383 GFRFYDRMEIKDILAYLRVIYNPSDEVSLLRIINRPKRGIGQGTISKLSRYARERGISLY 442

Query: 468 EYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           +   +             + +     + EL   ++  S       ++     +++     
Sbjct: 443 KAGTEAESNPYLTASFKKRVKAFFDLLEELREKSETLSIDTLTHQVVTRTGYQRELNEEG 502

Query: 522 GNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             +     + + E  +      + N   +L   + E+             N N V +MT+
Sbjct: 503 TQQARNRLENIQELFSVIEEFMKGNENKTLGAFLEEVSLISDVDNMED--NQNVVTLMTL 560

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE PVVF++     +F H +    H                              
Sbjct: 561 HSAKGLEFPVVFIIGMEEGLFPHANSMMDHEELEEERRL--------------------- 599

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDER 694
                         YVG+TRA D+L + +          K      + D +      D  
Sbjct: 600 -------------CYVGITRARDELYLTRARERMRFGQRKPYPPSRFLDEIPPQLFEDNN 646

Query: 695 VKKIKLTNSINKDE 708
            KK ++  +I + E
Sbjct: 647 DKKEEILGNIKEKE 660


>gi|260662573|ref|ZP_05863468.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN]
 gi|260553264|gb|EEX26207.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN]
          Length = 1337

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 156/1144 (13%), Positives = 321/1144 (28%), Gaps = 229/1144 (20%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
              G    +S     + L PL   Q+ ++    +   E G     ++ +       T   +
Sbjct: 202  EEGADPRQSAF-FKRLLEPLVGPQLKELRDQWAALGEVGPARFAEQVEEDLAKLATTVDD 260

Query: 64   E-----RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIRDRFNTY 117
            +      +  L+     + F P+      + + +  D     +   +D+   + D +   
Sbjct: 261  QGHLLGSWDSLAQTLNKKNFAPKLRKRKDDDDPELLDELGVQRGGLRDQLGDLHDTYFFQ 320

Query: 118  KMFKST----------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                                 +A     HY+  K+   +LDF DL      +L   +++ 
Sbjct: 321  SAADLVKYGQKAGALIEILTRMATDFRCHYQIIKQDRRLLDFSDLEHYAYAILTGENINP 380

Query: 168  -----------------WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
                              ++ ++ +    I+IDE QDT+ +         +D  +     
Sbjct: 381  KVTWSDEEARAKRQAAAQVQAELQRHYKEIMIDEYQDTNRL---------QDDLLRLLHK 431

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
            S     F VGD KQSIY F  A+P                 GQ    ++L  ++RS  ++
Sbjct: 432  SGQNHRFMVGDMKQSIYRFRQADPTLFKDYYDQFSAD----GQSSEALDLSDNYRSRHEV 487

Query: 271  LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-SQCNPQQESW 329
              +V+ +F    + Q            +          Q                +  + 
Sbjct: 488  TDLVNLIFEQLMDQQLGEMVYDDKASLKPKADWGADRDQASPATPELLLFDGGVKKTTAN 547

Query: 330  TSYFDSLPQESSASILA---RRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRK 384
             +  D++        +A     I   I  ++  +TI      + R I   DI +L R ++
Sbjct: 548  PTGEDAIVVRQPEDKVASEVWLIGQRIRELLAKETILDPETKRVRPITPGDIAILSRAKR 607

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                I  +         + V+ +          I+ +M+L + I +   D+    +L+SP
Sbjct: 608  ----IHSVIAEQFAKLNLPVMVHGVENYFKATEIRVVMSLLKVIDNPYQDVPLAAVLRSP 663

Query: 445  L-------------------FNFSEDDIFKI--------------CTQRHETETVYEYIQ 471
            L                     F+E ++  +                     +   E ++
Sbjct: 664  LIQVAPEVAAKFGLSQGENRIGFTEPELAYLKVNSTSKDFFGVVQQNYYAWRDQEVEAVE 723

Query: 472  KFANCGISKFQH----------------------------VIKYIHELIHIAQFCSPHDF 503
                    +                                 +    L  +AQ     D 
Sbjct: 724  NHDTLTEEELAERVAGDPFGLATKEELGVNCGLIYLKLARFFELRDHLRRVAQRRPLVDL 783

Query: 504  FTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I  A            G +    L          E++ +  L + I  +EQ      
Sbjct: 784  IWTIYQATGYLDYVGGMSGGPQRQANLHALYERASGYEESGFKGLYQFIHFIEQMQKKND 843

Query: 563  RAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND--DP 616
                A      + + +MT+H +KGL+ P+VFLV+T  Q  + +    +     L      
Sbjct: 844  DLGEATTALAGDAINVMTIHKSKGLQFPIVFLVETTHQFQADRDPVTIEPQAGLGFTYVD 903

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN---- 672
                   + K      + L +  K+  + E  RLLYV +TRA  +L I  +   ++    
Sbjct: 904  STANETMRVKHPLVQQAALKEKKKRQDRAEEMRLLYVALTRAEQRLFITGYVKDADLTKK 963

Query: 673  -----------------EKKSNQRTWYDMVYDSFHNDERVKKIKL--------------- 700
                               +   ++  D +  +         ++                
Sbjct: 964  MDKWNRAFDSASPLLTTTTRLKGQSMLDWIMMTLVRTANFPTLREGVEAAATPLRGLTKA 1023

Query: 701  --------TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                     + +        +   +           T +Q   + +       P +    
Sbjct: 1024 AYQIKLQNADQVQAALNTPLDLHPNATAEQATPAAATSRQFKADLERVLNFTYPDQVATQ 1083

Query: 753  EPYILNPSTIDTKGKTNLESLLS------------------------------------- 775
                   ST+         + L                                      
Sbjct: 1084 TTAFQAVSTVREAFARQDPTNLEMGRLEIDRDQIKEAGAYLAPEERAFENPAFITGASDQ 1143

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLL--SITRL 831
            +      G   H + Q +  L E   +  + +       + L    +    +    +   
Sbjct: 1144 EPTGTAIGTATHLVFQKLP-LTEPLDEGAVRALIKSLTESGLIDNPQVAAGIDVVGVVSF 1202

Query: 832  LENPMMTTAMS--CDSYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIF 879
             +  +     +     + EV  S  ++              +++I G ID        I 
Sbjct: 1203 YQTGLGQVITAHPEQVHREVPFSMLLSAHDLFSGIGATDDSEVLIHGIIDGYVQHDDQID 1262

Query: 880  IFEYKTHH----HVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVF 933
            +F+YKT      H  ++++ +   +  QL +Y   L      P + +   L +    +V 
Sbjct: 1263 LFDYKTDRISQAHPEEDLQELADKYSGQLVLYADALTKMTGVPLEKIHRHLYFTRAKRVV 1322

Query: 934  IIPQ 937
             +  
Sbjct: 1323 TLSA 1326


>gi|90962576|ref|YP_536492.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118]
 gi|122448460|sp|Q1WRS0|ADDA_LACS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|90821770|gb|ABE00409.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118]
          Length = 1248

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 122/625 (19%), Positives = 215/625 (34%), Gaps = 38/625 (6%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           L      QK  I + +   S  + E L        +   +  T K  +       + K  
Sbjct: 294 LDDDQKKQKERINKTLRDGSKKIIEDLSVKYFALPEDEIKELTQKSKQIVETLSEVVKEF 353

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            A + + K++  VLDF DL   T  +L         ++ ++  +   I++DE QDT+ +Q
Sbjct: 354 GAEFSKEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDEYQDTNQLQ 413

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ ++          H +P  +F VGD KQSIY F  A+P   L++ +          
Sbjct: 414 ETILTTIA---------HKNPGNMFMVGDVKQSIYGFRLADPGLFLKKYQSFATD----D 460

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  +FRS  ++    + +FS   + +          R             +  
Sbjct: 461 NDDERIILAENFRSMENVTAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKYYPEETPIKA 520

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKR 369
           +V+       + + +      D    ++ A       A  I  ++       +   G  R
Sbjct: 521 EVLVYESEDSSQESDDEPVNEDF-SIDNKAQGQIVMTAKRIKELVENGEKIYDKKQGTIR 579

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I+ +DI +L   RK+      +         + +   D         +K +M+  + I 
Sbjct: 580 PIEYRDIAILAPTRKN----NLILTEEFKRLGVPIFVPDAQNYFQTTELKIMMSFLQIID 635

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-----------EYIQKFANCGI 478
           +   D+  V +L+SP+    E+++  +       +              E    FA    
Sbjct: 636 NPYQDIPLVAVLRSPIVGLKENELAYLRINDKTGDYFQAVESFYDNFEVEKASAFAQSLY 695

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTL 537
            K    +K + E  ++AQ          I               G +    L        
Sbjct: 696 EKIAIFLKQLTEFRNMAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALYERAA 755

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593
             E+ S+  L + +  + +     K    A    + + V +MT+H +KGLE PVVFL+D 
Sbjct: 756 EYEEMSFKGLFQFVRFINKMQTKNKDLSEATTQVSDDAVTVMTIHGSKGLEFPVVFLLDA 815

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             +       K   +               + K+   +     K   K    E  RLLYV
Sbjct: 816 THKFNVGDLNKPYLLNADDGIGISYLDPDTRVKTDTLMKVIAGKQALKKLAAEQMRLLYV 875

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ 678
            +TRA  QL I       NE  S  
Sbjct: 876 ALTRAEQQLFIVGSYKDKNEALSKW 900



 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 21/302 (6%)

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN---SINKDE 708
            Y+G      ++    + +   E  +        +       E  + +++ +    I    
Sbjct: 950  YIGELPVKFEVKFYSNQDLRGENITLDENSESWLKQQLKKIEEQEPLEINDKQYRIIDKI 1009

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
              +   +    + T  +    +K+  D+          I      P  +N    +     
Sbjct: 1010 LQSKYPNESLAKTTAYQAVSDLKRAFDDPDNNMMQSLEIDWQDQVPQGINRYVQNELSLP 1069

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-- 826
               +          G+  H LLQ +    E   +  +              E    +   
Sbjct: 1070 KFMTTKVKVSPAQVGIATHLLLQKLPLDDEVTLEELMQLLAQLVEDKLITSEVAKEINLN 1129

Query: 827  SITRLLENPMMTTAMS--CDSYSEVSVSGKINCP----------KKDIIISGRIDQISIS 874
             I     + +    +        E+  +  I             ++ I++ G ID +   
Sbjct: 1130 QIKVFYTSDLGRKVLKNKDKVKRELPFAMIIPAGRLFSNVDNDVEQPILVHGIIDGLIEL 1189

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVF 933
               + IF+YKT HH     + +   +  QL++Y   ++    NK +   +IY +   K  
Sbjct: 1190 DDEVIIFDYKTDHHT--SEDKLIENYRGQLNLYAMAVESML-NKKVSQKIIYSLDLGKSI 1246

Query: 934  II 935
            ++
Sbjct: 1247 VL 1248


>gi|23098214|ref|NP_691680.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
 gi|22776439|dbj|BAC12715.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831]
          Length = 741

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 112/628 (17%), Positives = 203/628 (32%), Gaps = 120/628 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y++  +KN  LDF+DLI+ T  L ++      +     +   +I +DE QD
Sbjct: 171 RQVAQVYEGYQKMLRKNQSLDFDDLIMQTIHLFQR---IPEVLEYYQRRFQYIHVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L   F          + L  VGD  QSIY + GA+   +L  ++     
Sbjct: 228 TNHAQYYLVKQLASRF----------QNLCVVGDSDQSIYRWRGADIGNILTFEKDYP-- 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RST  IL   ++V S     +  +  +        +       
Sbjct: 276 ------SARTVLLEQNYRSTKSILQAANQVISNNSGRKPKNLWTDNIDGKNLNYYQGG-- 327

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                            +    A  +   I  +I  +       
Sbjct: 328 ---------------------------------TEQEEALFVTDKIQQLIRENE------ 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D+ +L R    +  I            I+          D   IKD++A  R 
Sbjct: 349 ---YKPSDVAILYRTNAQSRAIEDTL----LKSGINYQMVGGMKFYDRKEIKDMIAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQKFANCGISK-----F 481
           I + +DD+SFV ++  P     +  + ++         ++YE +++    G+SK      
Sbjct: 402 ITNPDDDISFVRVVNEPKRGVGKTSVERLQAYAGEHDISLYEAVKEVDFTGVSKKAANAL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
                 I  L    +F +  D    IL      +   +    E     + L+EF+  T  
Sbjct: 462 AGFESLIRTLSQQQEFLTATDMVEAILERTGYEEMLKNERTIEAQSRLENLEEFMTVTKD 521

Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGS 595
            E+ +   +L   +++L       +          ++ +MT+H AKGLE PVVFL+    
Sbjct: 522 FEKASEDKTLIAFLTDLALVADIDRVDEEDPDHNEKITLMTLHAAKGLEFPVVFLIGMEE 581

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            VF H                                                 L YVG+
Sbjct: 582 NVFPHSRSIMDEDEMEEERR----------------------------------LAYVGI 607

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA  +L +      +   ++N       +     N+   + I     I+K  + A    
Sbjct: 608 TRAEKELYVTHAKMRTLYGRTNMNPISRFI-----NEIPKELIDGLEEISKPMFGAKSLE 662

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKL 743
                  P +R     Q     +  +  
Sbjct: 663 RSPQRPAPKKRRAEKMQSSTGAESKEWA 690


>gi|300215188|gb|ADJ79604.1| ATP-dependent helicase/nuclease subunit A (ATP-dependent
           helicase/nuclease addA) [Lactobacillus salivarius CECT
           5713]
          Length = 1248

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 121/626 (19%), Positives = 217/626 (34%), Gaps = 38/626 (6%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           L      QK  I + +   S  + E L        +   +  T K  +       + K  
Sbjct: 294 LDDDQKKQKERINKTLRDGSKKIIEDLSVKYFALPEDEIKELTQKSKQIVETLSEVVKEF 353

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            + + + K++  VLDF DL   T  +L         ++ ++  +   I++DE QDT+ +Q
Sbjct: 354 GSEFSKEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDEYQDTNQLQ 413

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ ++          H +P  +F VGD KQSIY F  A+P   L++ +       N  
Sbjct: 414 ETILTTIA---------HKNPGNMFMVGDVKQSIYGFRLADPGLFLKKYQSFATDDNND- 463

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  +FRS  ++    + +FS   + +          R             +  
Sbjct: 464 ---ERIILAENFRSMENVTAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKYYPEETPIKA 520

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---R 369
           +V+       + + +      D    ++ A       A  I  ++       + K+   R
Sbjct: 521 EVLVYESEDSSQESDDEPVNEDF-SIDNKAQGQIVMTAKRIKELVENGEKIYDKKQGAIR 579

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I+ +DI +L   RK+      +         + +   D         +K +M+  + I 
Sbjct: 580 PIEYRDIAILAPTRKN----NLILTEEFKRLGVPIFVPDAQNYFQTTELKIMMSFLQIID 635

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-----------EYIQKFANCGI 478
           +   D+  V +L+SP+    E+++  +       +              E    FA    
Sbjct: 636 NPYQDIPLVAVLRSPIVGLKENELAYLRINDKTGDYFQAVESFYDNFEVEKASAFAQSLY 695

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTL 537
            K    +K + E  ++AQ          I               G +    L        
Sbjct: 696 EKIAIFLKQLTEFRNMAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALYERAA 755

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593
             E+ S+  L + +  + +     K    A    + + V +MT+H +KGLE PVVFL+D 
Sbjct: 756 EYEEMSFKGLFQFVRFINKMQTKNKDLSEATTQVSDDAVTVMTIHGSKGLEFPVVFLLDA 815

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             +       K   +               + K+   +     +   K    E  RLLYV
Sbjct: 816 THKFNVGDLNKPYLLNADDGIGISYLDPDTRVKTDTLMKVIAGEQALKKLAAEQMRLLYV 875

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQR 679
            +TRA  QL I       NE  S   
Sbjct: 876 ALTRAEQQLFIVGSYKDKNEALSKWE 901



 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 92/308 (29%), Gaps = 21/308 (6%)

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN--- 702
            +     YVG       +    + +   E  +        +       E  + +++ +   
Sbjct: 944  DTREPAYVGELPVKFAVKFYSNQDLREENITLDENGESWLKQQLKKIEGQEPLEINDKQY 1003

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
             I      +   +    + T  +    +K+  D+          I      P  +N    
Sbjct: 1004 RIIDKILQSKYPNESLTKTTAYQAVSDLKRAFDDPDNNMMQSLEIDWQDQAPQGINRYVQ 1063

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKE 820
                     +          G   H LLQ +    E   +  +       ++  +     
Sbjct: 1064 GELKLPKFMTTKVKVSPAQVGTATHLLLQKLPLDDEVTLEELMQLLSQLVEDKLITSEVA 1123

Query: 821  YKNLLLSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP----------KKDIIISGRI 868
             +  L  I     + +  T +        E+  +  I             ++ I++ G I
Sbjct: 1124 KEINLDQIKNFYASDLGKTVLENKDKVKRELPFAMIIPAGRLFSNVDNDVEQPILVHGII 1183

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-V 927
            D +      +  F+YKT HH     + +   +  QL++Y   ++    NK +   +IY +
Sbjct: 1184 DGLIELDDEVITFDYKTDHHT--SEDKLIENYRGQLNLYAMAVESML-NKKVSQKIIYSL 1240

Query: 928  SEPKVFII 935
               K  ++
Sbjct: 1241 DLGKSIVL 1248


>gi|313896178|ref|ZP_07829731.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974977|gb|EFR40439.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 747

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 122/777 (15%), Positives = 228/777 (29%), Gaps = 141/777 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+    L +  V                 +  +  TL   +        
Sbjct: 27  GAGSGKTRVLTYRIANLLAH-DVPPYRILAITFTNKAAREMRDRVDTLIGEAAHDVWLST 85

Query: 66  FSLLSSFFLTQKFTP----QKNIITQEINKKSPDLKEKLKKS------------QDEFIK 109
           F    + FL  +       +KN +  +       ++E LK+             Q     
Sbjct: 86  FHSFCARFLRIEIEHLKGYEKNFVIYDAADSKGLIRECLKELNIDEKHTAPGAVQSHISD 145

Query: 110 IRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            ++   T   F +            +   Y+   + N  LDF+DL++ T  +L + +   
Sbjct: 146 AKNNLLTAAQFAAGAGDFFAEQVAKVYELYQSKLRANNALDFDDLLMLTVAVLSQNEE-- 203

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +R K  ++  +IL+DE QDT+  Q+ + + L              R +  VGD  QSIY
Sbjct: 204 -VRRKYQEKFRYILVDEYQDTNGAQYNITKLLAG----------GHRNICVVGDADQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  +R           + ++I L  ++RST +IL   + V     + +  
Sbjct: 253 GWRGADMRNILNFERDYP--------EATVILLEQNYRSTKNILEAANAVIENNLDRKKK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW                          + ++    A 
Sbjct: 305 A---------------------LW-------TDNVQGDPIVVY-------EGATEKNEAS 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   +  +              ++  DI VL R    +  I            +     
Sbjct: 330 YIVREVERLH---------TMFNVKYGDIAVLYRTNAQSRNIEEAFYA----SGVPYSMV 376

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                 D   IKD++A  R I +  D LS + ++  P     +  + ++         ++
Sbjct: 377 GAVRFYDRREIKDIIAYLRVIYNPRDTLSLLRIINVPRRGLGQTTLARMAELAAEHRISL 436

Query: 467 YE---------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
           +E          I K +       +     +   +        H+    I+      +  
Sbjct: 437 FEIITDSQMLAMIPKLSGKVKFALEDFAALVFTFMGQLGTRPLHEIVEDIIEESGYAKAL 496

Query: 518 ISRFGN---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-TIKRAHSANHNEVR 573
                    + ++ L EF++     E  +      L   L Q    +       +   V 
Sbjct: 497 EEDKKEDNRDRLENLREFISVAKNFEDGAAEGENGLEDFLAQISLISDVDQAEQSDGSVT 556

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT H AKGLE P VF+      +F H                                 
Sbjct: 557 LMTFHAAKGLEFPTVFMAGMEEGLFPHSRTL----------------------------- 587

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                L     EE  R  YVG+TRA  +L +      +   ++        + +   +  
Sbjct: 588 -----LDDDEIEEERRTCYVGITRAERRLYLTHARQRTIYGRTEMSRPSRFLAEIPEHLV 642

Query: 694 RVKKIKLTNSIN-----KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             K+       +      D W         P   P  +       +       K  +
Sbjct: 643 EHKQADFAAEGDMRGGRTDVWGRGANGVRRPYMPPPPQHTAEDGSVIRPDAAAKFTA 699


>gi|227891362|ref|ZP_04009167.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           salivarius ATCC 11741]
 gi|227866940|gb|EEJ74361.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus
           salivarius ATCC 11741]
          Length = 1253

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 121/626 (19%), Positives = 215/626 (34%), Gaps = 38/626 (6%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           L      QK  I + +   S  + E L        +   +  T K  +       + K  
Sbjct: 299 LDDDQKKQKERINKTLRDGSKKIIEDLSVKYFALPEDEIKELTQKSKQIVETLSEVVKEF 358

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            A + + K++  VLDF DL   T  +L         ++ ++  +   I++DE QDT+ +Q
Sbjct: 359 GAEFSKEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDEYQDTNQLQ 418

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ ++          H +P  +F VGD KQSIY F  A+P   L++ +          
Sbjct: 419 ETILTTIA---------HKNPGNMFMVGDVKQSIYGFRLADPGLFLKKYQSFATD----D 465

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  +FRS  ++    + +FS   + +          R             +  
Sbjct: 466 NDDERIILAENFRSMENVTAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKYYPEETPIKA 525

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN---GKKR 369
           +V+       + + +      D    ++ A       A  I  ++       +   G  R
Sbjct: 526 EVLVYESEDSSQESDDEPVNEDF-SIDNKAQGQIVMTAKRIKELVENGEKIYDKKQGTIR 584

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I+ +DI +L   RK+      +         + +   D         +K +M+  + I 
Sbjct: 585 PIEYRDIAILAPTRKN----NLILTEEFKRLGVPIFVPDAQNYFQTTELKIMMSFLQIID 640

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-----------EYIQKFANCGI 478
           +   D+  V +L+SP+    E+++  +       +              E    FA    
Sbjct: 641 NPYQDIPLVAVLRSPIVGLKENELAYLRINDKTGDYFQAVESFYDNFEVEKASAFAQSLY 700

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTL 537
            K    +K + E  ++AQ          I               G +    L        
Sbjct: 701 EKITIFLKQLTEFRNMAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALYERAA 760

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593
             E+ S+  L + +  + +     K    A    + + V +MT+H +KGLE PVVFL+D 
Sbjct: 761 EYEEMSFKGLFQFVRFINKMQTKNKDLSEATTQVSDDAVTVMTIHGSKGLEFPVVFLLDA 820

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             +       K   +               + K+   +     +   K    E  RLLYV
Sbjct: 821 THKFNVGDLNKPYLLNADDGIGISYLDPDTRVKTDTLMKVIAGEQALKKLAAEQMRLLYV 880

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQR 679
            +TRA  QL I       NE  S   
Sbjct: 881 ALTRAEQQLFIVGSYKDKNEALSKWE 906



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 83/276 (30%), Gaps = 18/276 (6%)

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              N  +W           E ++       I      +   +    + T  +    +K+  
Sbjct: 981  DENGESWLKQQLKKIGGQEPLEINDKQYRIIDKILQSKYPNESLTKTTAYQAVSDLKRAF 1040

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
            D+          I      P  +N             +          G   H LLQ + 
Sbjct: 1041 DDPDNNMMQSLEIDWQDQAPQGINRYVQGELKLPKFMTTKVKVSPAQVGTATHLLLQKLP 1100

Query: 795  TLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVS 850
               E   +  +       ++  + P    +  L  I     + +    +        E+ 
Sbjct: 1101 LDDEVTLEELMQLLSQLVEDKLITPEVAKEINLDQIKNFYASDLGRKVLENKDKVKRELP 1160

Query: 851  VSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
             +  I             ++ I++ G ID +      + IF+YKT HH     + +   +
Sbjct: 1161 FAMIIPAGRLFSNVDNDVEQPILVHGIIDGLIELDDEVIIFDYKTDHHT--SEDKLIENY 1218

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFII 935
              QL++Y   ++    NK +   +IY +   K  ++
Sbjct: 1219 RGQLNLYAMAVESML-NKKVSQKIIYSLDLGKSIVL 1253


>gi|292670877|ref|ZP_06604303.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541]
 gi|292647498|gb|EFF65470.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541]
          Length = 747

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 124/750 (16%), Positives = 220/750 (29%), Gaps = 135/750 (18%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK- 77
            +  L    V                 +  +  TL   S        F    + FL  + 
Sbjct: 39  RIANLLEHAVPPYRILAITFTNKAAREMRDRVDTLIGDSARDVWLSTFHSFCARFLRMEI 98

Query: 78  ---FTPQKNIITQEINKKSPDLKEKLKKS------------QDEFIKIRDRFNTYK--MF 120
               T  KN +  + +     ++E LK+             Q      ++R    K    
Sbjct: 99  EHLGTYAKNFVIYDASDTKGLIRECLKELNIDEKHTAPGAVQSHISDAKNRLLDVKTFAA 158

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           ++T         +   Y      N  LDF+DL++ T +LL   +    IR K  ++  +I
Sbjct: 159 QATDFFAEQVAKIYELYHSKLLANNALDFDDLLMLTVELLSNNEE---IREKYQKKFQYI 215

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+  Q+ + + L E            R +  VGD  QSIY + GA+ + +L  
Sbjct: 216 LVDEYQDTNGAQYAITKLLAE----------GHRNICVVGDADQSIYGWRGADMRNILNF 265

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           +R           + ++I L  ++RST +IL   + V       +               
Sbjct: 266 ERDYP--------EATVILLEQNYRSTKNILAAANAVIDNNLTRKKK------------- 304

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW       D+        +        + S+    A  I   +  +    
Sbjct: 305 --------DLW------TDNPTGDPLIVY--------EASTEKNEAAFIVREVERLH--- 339

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                      +  DI VL R    +  I            I           D   I+D
Sbjct: 340 ------TMFNAKYGDIAVLYRTNAQSRNIEEAFYAT----GIPYAMVGAVRFYDRREIRD 389

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----------TETVYEYI 470
           ++A  R I +  D LS + ++  P     +  + ++  +  E             +   I
Sbjct: 390 IIAYLRVIYNPRDTLSLLRIINVPKRGLGQTTLGRMMEKAAEYRISLFELITDAQLIGTI 449

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVID 527
            K +     + ++    I   +        H+    I+                 ++ ++
Sbjct: 450 PKLSAKVKFELENFAALIFTYMGQLGTHPLHEIVEDIIEESGYAAALEDDTKEDNHDRLE 509

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESP 586
            L EF++     E  +      L   L Q         +   +  V +MT H AKGLE P
Sbjct: 510 NLREFISVAKNFEDGAEEGENGLEDFLAQISLISDVDETEQSDGNVTLMTFHAAKGLEFP 569

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+      +F H                                      L  +  EE
Sbjct: 570 TVFMAGMEEGLFPHSRTL----------------------------------LDDTEIEE 595

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             R  YVG+TRA  +L +      +   ++        + +        K          
Sbjct: 596 ERRTCYVGITRAECRLYLTYARQRTIYGRTEMSRPSRFLTEIPEELLEHKTADFFAESTS 655

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDE 736
               +  W                +   ++
Sbjct: 656 GRGRSDVWGRGSSGGRRSYLPPPPQHTAED 685


>gi|304436816|ref|ZP_07396782.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370188|gb|EFM23847.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 746

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/796 (15%), Positives = 233/796 (29%), Gaps = 144/796 (18%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
            +  L    V                 + ++   L   +        F    + FL  + 
Sbjct: 39  RIANLLEHGVPPYRILAITFTNKAAREMRERVDALIGDAAQDVWLSTFHSFCARFLRMEL 98

Query: 79  TP----QKNIITQEINKKSPDLKEKLKKS------------QDEFIKIRDRFN--TYKMF 120
                  KN +  +       L+E LK+             Q      ++R         
Sbjct: 99  EHYGRYAKNFVIYDAADSKGLLRECLKELNIDEKHTAPGAVQAHISDAKNRLLDVAAFTA 158

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           ++T         + A Y+   ++N  LDF+DL++ T +LL K +    +R K  ++  +I
Sbjct: 159 QATDFFAEQVAKIYALYQSKLQENNALDFDDLLMLTVELLTKNE---ELRTKYQKKFQYI 215

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+  Q+ + + L           +  R +  VGD  QSIY + GA+ + ++  
Sbjct: 216 LVDEYQDTNGAQYAITKLL----------DAEHRNICVVGDADQSIYGWRGADMRNIMNF 265

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           ++           + ++I L  ++RST +IL   + V       +               
Sbjct: 266 EKDYP--------EATVILLEQNYRSTKNILAAANAVIENNLTRKKK------------- 304

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                   +LW    +                  ++ + ++    A  I   +  +    
Sbjct: 305 --------ELWTDNPTGDRI--------------TIYEGATEKNEASYIVREVERLH--- 339

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     ++  DI VL R    +  I            +           D   IKD
Sbjct: 340 ------TMFHVKYGDIAVLYRTNAQSRNIEEAFYAT----GVPYAMVGSVRFYDRREIKD 389

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----------TETVYEYI 470
           ++A  R I +  D LS + ++  P        I ++     E             +   I
Sbjct: 390 IIAYLRVIYNPRDTLSLLRIINVPRRGLGPTSIARMMETAEEYRISLFEVITDAQLLSMI 449

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVID 527
            K +       +     +   +        H+    ++                  + ++
Sbjct: 450 PKLSTKVKLALEEFAAMVFTFMGQLGTRPIHEIVEDVIETSGYAAALEEEKKEDNRDRLE 509

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESP 586
            L EF++     +  +      L   L Q         +   +  V +MT H AKGLE P
Sbjct: 510 NLREFISVAKNFDDGAAEGENGLADFLAQIALISDVDQTEQSDGTVTLMTFHAAKGLEFP 569

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+      +F H                                      L  +  EE
Sbjct: 570 AVFMAGMEEGLFPHSRTL----------------------------------LDDTEIEE 595

Query: 647 YNRLLYVGMTRASDQLIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             R  YVG+TRA  +L +           +  S   +       ++V     +      +
Sbjct: 596 ERRTCYVGITRAERRLYLTYARQRTIYGRTEMSRPSRFLAEIPEELVEHKEADFLGGTDL 655

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK-KLFSPIKNDINEPYIL 757
           +  ++I  +     E   +         + ++ +                K        +
Sbjct: 656 RAPSNIWSERSTRTERKRYMTPPQHTAEDGSVIRPDASAAFKAGDAVRHSKWGDGRIVAI 715

Query: 758 NPSTIDTKGKTNLESL 773
           + S  D +        
Sbjct: 716 SGSGEDAELSIAFPGE 731


>gi|309775325|ref|ZP_07670333.1| putative ATP-dependent nuclease, subunit A [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916907|gb|EFP62639.1| putative ATP-dependent nuclease, subunit A [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 815

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 148/892 (16%), Positives = 304/892 (34%), Gaps = 93/892 (10%)

Query: 39  METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
           ME     +      LQQ           +++ +          K      + K    L++
Sbjct: 1   MEQKLLAVKDLEDALQQKDYQAYRTAFLAIVHAVVPPSPDKEDKEY--ARLRKGLLGLED 58

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
                     +          +      + + +   + Y   K+++ V+DF+D+     +
Sbjct: 59  AQLDILFSEDEFMRDIRYL--YPYVKKLVEMCQDYRSVYARTKEEHKVIDFDDMEHFALE 116

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           +L+       +      +   I++DE QD++ +Q +++  +                +F 
Sbjct: 117 ILQ--AKGGQVADLYRDKFVEIMVDEFQDSNDVQNQLVMLIC-----------RKNNVFR 163

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD KQSIY F  A+P  +              G    +I L  ++RS   I+   + +F
Sbjct: 164 VGDIKQSIYGFRYAKPALMKGLIDH-------RGVYDEVIYLSNNYRSKKMIVDFNNDLF 216

Query: 279 SIPENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
               N  G S          +       G V +    V  ++ +                
Sbjct: 217 KQLMNIDGFSCSYAKEDDVETGVPAQLEGNVPICFHAVFHNEIKEAEGLIV--------- 267

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
             S   + A  IA  I  +   +           + KD +VLVR       +  +   L 
Sbjct: 268 --SKNELKASYIANQILEIKEREQR---------KWKDFVVLVRGNARKDDMKKIFDEL- 315

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               I    + ++      A++ +++  + IL   DD+SF   L SPLF  S  D+ +  
Sbjct: 316 ---NIPYFIDIKYGFYQSNAVQVILSAMKCILHPHDDISFTATLLSPLFQKSTMDLAEAK 372

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
            Q+ + ++ Y +  +    G  + Q  +   ++L          +    +   K   +  
Sbjct: 373 LQKEKGQSYYSWYCEHPFPGFEQLQDFVHQGNKLR-------ISELINQLYELKDYYR-- 423

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS---ANHNEVRI 574
                 +    LD      ++ E    + L   +S++EQ             +  + VR+
Sbjct: 424 -LHTTIQEKTNLDLLFEKAVQFEDQYAAGLSSFLSQIEQIKDAQTAEAIPIGSEADVVRV 482

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS- 633
           M++H +KGL+ PVVFL  T  Q       K   I  S        + +P+   R  +   
Sbjct: 483 MSIHQSKGLQFPVVFLWSTDKQT--PIEFKDFCISDSELGLAMKAMDLPKRYVRTTVARI 540

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +     K   EE  R+LYV  TRA  Q+ I       +  +           + + +  
Sbjct: 541 AMEHKKDKEELEEEMRILYVATTRAQTQMHIVDCILDLDTYRHPLSMSGVYNRNGYTSWI 600

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
               +   + +   + +   W +                              +    + 
Sbjct: 601 LQTFLCNPSPLFTIKEVHRFWQSEVQSVEKAA----------------YHPFKVYEKPSG 644

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
              L  ++     +    +     Q    G ++HK+++ + T P   R + IT      A
Sbjct: 645 TIELVTASAQETRELPAFTFDEATQGSIYGTMMHKMIERLAT-PPWNRDDIIT-----TA 698

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873
                +  +  + ++ +L ++     A + + + E+    K     +  I+ G +D +S 
Sbjct: 699 ADLSMELKEWDIQTLLQLGKDSDYLQACTGNVHHEMPFMVK----DEAQILHGYMDFVSF 754

Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            +++I I ++KT      +       +  QL++Y+K ++  YP+ S+   + 
Sbjct: 755 QEESITIIDFKTDSLNDDQ--EFRKRYKGQLAMYKKAMQILYPDHSIQTYIY 804


>gi|308071013|ref|YP_003872618.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681]
 gi|305860292|gb|ADM72080.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681]
          Length = 774

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 114/718 (15%), Positives = 222/718 (30%), Gaps = 133/718 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   + +                +  +   L            
Sbjct: 33  GAGSGKTRVLTHRIAYLIATRKTAPWGILAITFTNKAAREMQDRVSKLIGPQGRDVWVST 92

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110
           F  +    L +       I    I   +  L                 + K  Q      
Sbjct: 93  FHSMCVRILRRDIERIGFISNFSILDSTDQLSVIRSCMKDLNIDTKKFEPKAVQSMMSTA 152

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +M++  +      +   +   Y++  K N  LDF+DLI+ T  L K+      
Sbjct: 153 KNELVTPEMYERKIGDYFEGIVAKVYTKYQQRLKNNNSLDFDDLIMATIQLFKE---VPE 209

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ + + L +              +  VGD  QSIY 
Sbjct: 210 VLDFYQKKFQYIHVDEYQDTNRAQYMLCKMLAD----------KHHRICVVGDSDQSIYR 259

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  +    +           I L  ++RST++IL   ++V       +   
Sbjct: 260 WRGADISNILNFEEDYPE--------ARTILLEQNYRSTSNILNAANEVIGQNTGRKPKK 311

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       D +   + + + +  +              
Sbjct: 312 ---------------------LW------TDKEGGAKIKVYRADSEHDEGY--------F 336

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I   I                    +L R    + ++  +         I      
Sbjct: 337 IASEIHKNINAGK----------TYSHHAILYRTNAQSRVVEEIL----IKSDIPYQIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKDL+A  R + + +DD+S + ++  P  +  +  + K+     E      
Sbjct: 383 GIKFYDRKEIKDLLAYLRLLSNPDDDISLIRIINVPKRSIGDTTVGKLQAAAAERGVSIF 442

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +      FA    +        I  L  +  + S  +    +L   + R +  +   
Sbjct: 443 RVLQVVDDLGFAGRTRNALVEFYDMIEGLSRMVDYLSVTELTEKMLETTQYRLELQNENT 502

Query: 523 NE---VIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKR--AHSANHNEVRIMT 576
            E    ++ +DEFL+ T+  E+     SL   +++L                 + V +MT
Sbjct: 503 LESRSRLENIDEFLSVTMEFEKGAEDKSLVSFLTDLALIADIDSMNDDEEEQSDAVVLMT 562

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VF+V     VF H      +                             
Sbjct: 563 MHSAKGLEFPIVFIVGMEEGVFPHSRAFLDNEELEEERRL-------------------- 602

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                          YVG+TRA +QL +      +   ++        + +     + 
Sbjct: 603 --------------AYVGITRAEEQLFLTCAQMRTLFGRTTANPPSRFLEEIPDELKE 646


>gi|320529158|ref|ZP_08030250.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399]
 gi|320138788|gb|EFW30678.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399]
          Length = 747

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/805 (14%), Positives = 231/805 (28%), Gaps = 139/805 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+    L +  V                 +  +  TL   +        
Sbjct: 27  GAGSGKTRVLTYRIANLLAH-DVPPYRILAITFTNKAAREMRDRVDTLIGEAAHDVWLST 85

Query: 66  FSLLSSFFLTQKFTP----QKNIITQEINKKSPDLKEKLKKS------------QDEFIK 109
           F    + FL  +       +KN +  +       ++E LK+             Q     
Sbjct: 86  FHSFCARFLRIEIEHLKGYEKNFVIYDAADSKGLIRECLKELNIDEKHTAPGAVQSHISD 145

Query: 110 IRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            ++   T   F +            +   Y+   + N  LDF+DL++ T  +L + +   
Sbjct: 146 AKNNLLTAAQFAAGAGDFFAEQVAKVYELYQSKLRANNALDFDDLLMLTVAVLSQNEE-- 203

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +R K  ++  +IL+DE QDT+  Q+ + + L              R +  VGD  QSIY
Sbjct: 204 -VRRKYQEKFRYILVDEYQDTNGAQYNITKLLAG----------GHRNICVVGDADQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  +R           + ++I L  ++RST +IL   + V     + +  
Sbjct: 253 GWRGADMRNILNFERDYP--------EATVILLEQNYRSTKNILEAANAVIENNLDRKKK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW                          + ++    A 
Sbjct: 305 A---------------------LW-------TDNVQGDPIVVY-------EGATEKNEAS 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   +  +              ++  DI VL R    +  I            +     
Sbjct: 330 YIVREVERLH---------TMFNVKYGDIAVLYRTNAQSRNIEEAFYA----SGVPYSMV 376

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                 D   IKD++A  R I +  D LS + ++  P     +  + ++         ++
Sbjct: 377 GAVRFYDRREIKDIIAYLRVIYNPRDTLSLLRIINVPRRGLGQTTLARMAELAAEHRISL 436

Query: 467 YE---------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
           +E          I K +       +     +   +        H+    I+      +  
Sbjct: 437 FEIITDSRMLAMIPKLSGKVKFALEDFAALVFTFMGQLGTRPLHEIVEDIIEESGYAKAL 496

Query: 518 ISRFGN---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-TIKRAHSANHNEVR 573
                    + ++ L EF++     E  +      L   L Q    +       +   V 
Sbjct: 497 EEDKKEDNRDRLENLREFISVAKNFEDGAAEGENGLEDFLTQISLISDVDQAEQSDGSVT 556

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT H AKGLE P VF+      +F H                                 
Sbjct: 557 LMTFHAAKGLEFPTVFMAGMEEGLFPHSRTL----------------------------- 587

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                L     EE  R  YVG+TRA  +L +      +   ++        + +   +  
Sbjct: 588 -----LDDDEIEEERRTCYVGITRAERRLYLTHARQRTIYGRTEMSRPSRFLAEIPEHLV 642

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             K+        + +               + R           +    +          
Sbjct: 643 EHKQADF---AVEGDMRGGRTDVWGRGANGVRRPYMPPPPQHTAEDGSVIRPDAAAKFTA 699

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQ 778
              +  S        ++     D +
Sbjct: 700 GDAVRHSKWGDGRVVSIRGEGEDAE 724


>gi|313906496|ref|ZP_07839829.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
 gi|313468662|gb|EFR64031.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
          Length = 799

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 107/586 (18%), Positives = 189/586 (32%), Gaps = 115/586 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                  Y++   +N  LDF+DL++ T  L ++      +     +   +I+IDE QDT+
Sbjct: 168 VAKCYYEYQKRLTQNNALDFDDLLVLTVKLFQQEPE---VLAYYQERFRYIMIDEYQDTN 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+  +R L           S  R L  VGD+ QSIY F GA  + +L  ++       
Sbjct: 225 TVQFHFVRLLA----------SRYRNLCVVGDDDQSIYKFRGANIRNILNFEKEFP---- 270

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST +IL   ++V +  +  +                        
Sbjct: 271 ----GAKVIKLEQNYRSTQNILNAANEVIANNKGRKQKK--------------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW        S    +   +  + +   +       A  +A  I+  +            
Sbjct: 306 LW-------TSNKGGELVHFRQFLNGFEE-------AEYVAGDIAGKVRAGGR------- 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q  D  VL R    + L       L     I               IKD++A  + + 
Sbjct: 345 --QYSDFAVLYRTNAMSRLFEEKFIAL----NIPYKIVGGVNFYARKEIKDMLAYLKTVD 398

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQH 483
           +  DDL+   ++  P        I KI      E  + Y+ + +           SK + 
Sbjct: 399 NGRDDLAVKRIINIPKRGIGNTSIGKIEQYALEENLSFYDALLEIDRVPGVSRAASKIRE 458

Query: 484 VIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
               I     I      S  +   +I+      Q+      +E    I+ +DE ++ T  
Sbjct: 459 FTSMIGRYRGIIHSGEFSVRELLEMIIRDTGYVQELEEENTDEAKARIENIDELISKTED 518

Query: 539 N-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +++   +L E + ++         +     + V +MT+H AKGLE   V++       
Sbjct: 519 YMKESDEPNLSEFLQQVSLVADID--SVEEGSDYVLLMTLHGAKGLEFDNVYMAGMEENT 576

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                     I        EE  RL YVG+TR
Sbjct: 577 FPSYMS--------------------------------ISADDPEEIEEERRLCYVGITR 604

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           A   L +          +         V +   N   +++      
Sbjct: 605 ARKDLTLTAAEMRMVRGEPQFHRASRFVREIPRNLVELERETTDTR 650


>gi|78045143|ref|YP_359945.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997258|gb|ABB16157.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 718

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 121/656 (18%), Positives = 202/656 (30%), Gaps = 126/656 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K    + I       K+KL   +       D F                  +   Y+E  
Sbjct: 133 KRFAPKAIAYHISSAKDKLISPRQYRDDADDLFKEK------------VAIIYNMYQEKL 180

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            KN  LDF+DL+     L +       +     +   +IL+DE QDTS  Q+ ++  L +
Sbjct: 181 NKNNALDFDDLLYYAVRLFENYP---RVLEYYQRRFKYILVDEYQDTSHAQYRLVNLLAQ 237

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                       R L  VGD  QSIYS+ GA+   +L  +R   +          ++ L 
Sbjct: 238 ----------KHRNLCVVGDPDQSIYSWRGADITNILNFERDYPE--------AKVVILK 279

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + V +     +     ST    H                        
Sbjct: 280 ENYRSTQKILDAANAVIAKNRMRKEKELFSTKESGH------------------------ 315

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                  +    D   +       A  +A TI +++ +               DI +L R
Sbjct: 316 ----PVYFYPAVDEKDE-------AAFVALTIESLVKSGE---------YNFNDIALLYR 355

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +               I  V        D   IKD++A  R + +  D ++   ++
Sbjct: 356 THALSRNFEEAF----MQRGIPYVIFGSRRFYDRKEIKDIIAYLRIVANPYDKVALKRII 411

Query: 442 KSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHI 494
             P     E    K+     ET           E +   +       +   + +     +
Sbjct: 412 NEPKRGIGEASFAKVEAYADETGLPIGLLLLRDEALALVSGKTRKALKEFGEMLLWFREL 471

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQEL 550
               S       IL          +    E     + L+EFL  T   E+ +   SL+  
Sbjct: 472 KDRVSVTKLTEEILERSGYLPALKAEDTMEARARIENLNEFLTVTQAFERESEDKSLEAF 531

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           +  +               N VR+MT+H AKGLE PVVFLV     +F H          
Sbjct: 532 LGTISLLTDADT--EEGGENRVRMMTLHAAKGLEFPVVFLVGLEEGIFPHSR-------- 581

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                    I  +     EE  RL YVG+TRA  +L + +    
Sbjct: 582 ------------------------AIFSIDPQELEEERRLCYVGITRAQKRLYLTRAWRR 617

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
           +   +++       + +            ++     D+ ++          +P +R
Sbjct: 618 TVYGRTDFNEPSRFLDEIPEELIESLLETVSGGNPVDKTLSPGGEKQKGAFSPGDR 673


>gi|295109226|emb|CBL23179.1| ATP-dependent DNA helicase PcrA [Ruminococcus obeum A2-162]
          Length = 744

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 106/625 (16%), Positives = 196/625 (31%), Gaps = 120/625 (19%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           +    +    +D        +    +      A  +   Y+ A ++N  LDF+DLI+ T 
Sbjct: 138 RALLAQISHAKDELLNPDEMEMNAGADFNQKRAAQVYREYQAALRRNNALDFDDLIVKTV 197

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
           +L +       +     +   +I++DE QDT+  Q++ +  L   +            L 
Sbjct: 198 ELFQN---CDDVLQTYQERFRYIMVDEYQDTNTAQFKFVSLLASRYE----------NLC 244

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIY F GA    +L  +R+             +I L  ++RST +IL   + V
Sbjct: 245 VVGDDDQSIYKFRGANIGNILGFERVFPN--------AKVIRLEQNYRSTQNILDAANGV 296

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            +     +  +                     LW             ++  +  + +   
Sbjct: 297 IANNTERKEKT---------------------LW-------TENPEGEKIHFRQFMNGYE 328

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +       A  +   I+                    D  VL R    + L         
Sbjct: 329 E-------AEYVVGDIAKRHREG---------AADYHDCAVLYRTNAQSRLFEEK----C 368

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               I               IKDL+   + + +  DDL+   +L  P        + ++ 
Sbjct: 369 LLANIPYKIVGGVNFYARKEIKDLLCYLKTVDNAADDLAVRRILNVPKRGIGATTVGRVQ 428

Query: 458 -TQRHETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                   + Y+ ++           +SK +  + +I  L   AQ  S  +    I+   
Sbjct: 429 DYADMMNISFYDALRVAEEVPSIGRSLSKIEGFVTFIQSLKSKAQAYSVSELLEEIIDLT 488

Query: 512 KGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-----NSYSSLQELISELEQYPPTIKR 563
               +  +   +E     + +DE ++ T+  E+        ++L   + E+         
Sbjct: 489 GYVDELKAEDTDEARARIENIDELISKTVSYEEAMKDEEREATLSGFLEEIALIADIDSV 548

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               N + V +MT+H+AKGLE P V+L      +F                         
Sbjct: 549 D--ENQDYVILMTLHSAKGLEFPYVYLAGMEDGMFPGSMS-------------------- 586

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                       I     S  EE  RL YVG+TRA  +L +          ++       
Sbjct: 587 ------------IFSGDPSDMEEERRLCYVGITRAMKELTLTSAQQRMVRGETQYNRVSR 634

Query: 684 MVYDSFHNDERVKKIKLTNSINKDE 708
            V +       +      +     E
Sbjct: 635 FVREIPRELVELGHTVQEHKPKMPE 659


>gi|154246915|ref|YP_001417873.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154161000|gb|ABS68216.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1131

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 157/953 (16%), Positives = 307/953 (32%), Gaps = 98/953 (10%)

Query: 2    KNRFGLSL----NESYELIYKDLWPLPYFQVSD----------INKYVSLSMETGNPTIL 47
            +           +       +       F              + + V ++    N +  
Sbjct: 199  RRTLAAPPISPLDGRLTAFRQAAADFAGFMHGTGTTEPETVVIVERLVEMATALANGSDP 258

Query: 48   KKAQTLQQASQTQCIEER------FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK 101
                 L Q   ++   +       F+             Q  +   + ++    L +   
Sbjct: 259  ATPAGLVQLLTSRPHPDLCTKAGTFASYRKKGKWAAAAKQAGLSKADGDR----LNDDAD 314

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                               ++  A +  A+ +   Y + K+ +  LDF+DLI    D+L+
Sbjct: 315  AHYTACCDAWISLLQAAASQALAALIEEARPVLQRYRDHKRASAQLDFDDLIFAARDMLR 374

Query: 162  KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT----HSSPRTLF 217
              D    +R  + Q   H+L+DE QDT  +Q E+   L  +   G +        P  LF
Sbjct: 375  DHDE---VRRALGQRFAHVLVDEFQDTDPLQTEIFWRLCGEPVEGNDDWTRFRIRPGALF 431

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGD KQ+IY F GA+    ++ +   + +  ++     ++ +  +FRS A ILT V++ 
Sbjct: 432  LVGDPKQAIYRFRGADVGAYVQARDAFRVQDPDS-----LLSISTNFRSCASILTFVNER 486

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            F    +A                  GQ G   L      +          +         
Sbjct: 487  FEAVLSA-----------------DGQPGFTALDPFHSDRGGLCVAALDIAVADENGKAS 529

Query: 338  QESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             E      A  IA   + +I +  I    +G +R  Q  DI +L     +          
Sbjct: 530  AEQQRDAEADAIAELCARLIESHPIIDRRSGAERPCQPGDIALLAPTGAELWRYEEALE- 588

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  I V       L     I+DL+AL R +  + D L+   +L+ PL   +E+D+  
Sbjct: 589  ---RRGIPVATQAGKGLFRRQEIQDLIALTRVLADRRDTLALGALLRGPLVGLTEEDLLD 645

Query: 456  ICTQRHETETVYEYIQKFANCGISKF------QHVIKYIHELIHIAQFCSPHDFFTLILG 509
            I      ++   + I +               + VI+ +  L       +PH+  +  + 
Sbjct: 646  IVWGLPRSKEQPDRIPRLDLSIDPAVITHSLARAVIERLQSLSRRGNSTTPHELLSQAVD 705

Query: 510  AKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSL-QELISELEQYPPTIKRAH 565
              + R   + R   +       +D +L+ +         +  + + +        ++   
Sbjct: 706  VMRVRPLLLERHRGQAERALANIDLYLSLSTGYAVRGLRAFAEAMTAAWSDEARAVEGRP 765

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             A    V + T+H AKGLE P+V  V+T + V + +          + D      +    
Sbjct: 766  DAQEEAVALFTMHAAKGLEWPIVIPVNTMTGVMAPESA--------VIDRQTETFYCSVL 817

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                       +  K+    E  RL YV  TRA + L++        +   ++  W  +V
Sbjct: 818  GVAPEGYETARQAEKEELDRERIRLWYVAATRARELLVL-----PRLDTTPSKSAWIGLV 872

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
              S  +   +    L   +        + +             T  Q       P +  +
Sbjct: 873  DLSLADLPGLDASHLPAGLTAA-GAGTDNTQTRATFAAEAETITAAQTRLTWLAPSRDEN 931

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
                 + E      + +       LE+         RGLI+HKL++ + T    + +  +
Sbjct: 932  AAGIVLREEEAAIWTGLADDQPPELEAAALVQGGRERGLILHKLMEEVLTGETSEAEAAL 991

Query: 806  TSYCTKNAKLWPAK---------EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
            T                        + L   + + L  P +   +  D  +E  V     
Sbjct: 992  TDRAADLIHALGRSPVSAPATGLSAEELAACVVQTLALPDIA-ILRPDLLAEFPVYAAQA 1050

Query: 857  CPKKDIIISGRIDQISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                +   +G  D ++I +    + + ++K+  +           + AQ+  Y
Sbjct: 1051 SDGVETATAGITDALTIGEDGRPVVVVDWKSDVNP---EAQTLDHYRAQVRAY 1100


>gi|15895932|ref|NP_349281.1| ATP-dependent DNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15025705|gb|AAK80621.1|AE007765_3 ATP-dependent superfamily I DNA helicase, PCRA [Clostridium
           acetobutylicum ATCC 824]
 gi|325510084|gb|ADZ21720.1| ATP-dependent superfamily I DNA helicase, PCRA [Clostridium
           acetobutylicum EA 2018]
          Length = 756

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 108/588 (18%), Positives = 199/588 (33%), Gaps = 116/588 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++  K+N  LDF+DLI  T +L KK   +  +     ++  +I+IDE QDT+ 
Sbjct: 171 ADVYLLYQKKLKENNALDFDDLIFKTVELFKK---APDVLAFYQRKFRYIMIDEYQDTNK 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E  R L           S+ + L  VGD+ Q IY + GA+ + +L  ++  +     
Sbjct: 228 SQYEFARLLA----------SANKNLCVVGDDDQCIYGWRGADIRNILNFEKDYRNAV-- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II+L  ++RS  +IL   + V     +    S                      
Sbjct: 276 ------IIKLEENYRSKGNILKAANGVIKNNPHEHLKSL--------------------- 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 +  S+   + + +    D      +    A +I   +                 
Sbjct: 309 ------RTRSEDGAKIKVYRGETDLDEASFA----AFKINKEVKE-------------EK 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  +L R    + +   +         I           D   IKD+M+  + I +
Sbjct: 346 RSFKDFAILYRTNAQSRVFEDIF----IKRNIPYRIIGGLKFYDRKEIKDIMSYLKLIGN 401

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN------CGISKFQH 483
             D++S   ++  P  +  +  + ++     E  E +Y+ +    N        IS  + 
Sbjct: 402 PLDNISLKRIINVPKRSIGQTTLGRLQQFADEVEECLYDALLDIENIPGIPKRAISSIKE 461

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               I+  I      +       IL       +  +    +    I+ ++E +N  +  E
Sbjct: 462 FTGMINSFIRRKDEINVSVLIKEILEQTGYLNELKASDDIQDKARIENIEELVNAAVDFE 521

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +   +L   + +              + + V +MTVH+AKGLE PVVF+    + +F 
Sbjct: 522 ENSDDKTLAAFLEKTALVADVDNYN--EDADTVVMMTVHSAKGLEFPVVFMAGMENGIFP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                    +   EE  RL YVG+TRA 
Sbjct: 580 GMASFNS----------------------------------EYEMEESRRLAYVGITRAK 605

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           ++L +          K+      D + +   N +    +       KD
Sbjct: 606 EKLYMTSAKLRRVFGKTQAFEESDFINEIDENLKEYVTLDGEGRRKKD 653


>gi|218438504|ref|YP_002376833.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424]
 gi|218171232|gb|ACK69965.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424]
          Length = 772

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 116/628 (18%), Positives = 215/628 (34%), Gaps = 106/628 (16%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
            + +     FS+L     +   +  KNI+T+++N      + +    + +    ++    
Sbjct: 138 ERGRTWNRNFSILDE---SDAQSIVKNIVTKQLNLNEKKFEPR--SIRYQISNAKNLGLN 192

Query: 117 YKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            + +     +    +   +   Y++    N  LDF+DLI+    L ++ +    I     
Sbjct: 193 PQQYDRENPNYIGRVVAEVYEEYQKQLAANNSLDFDDLILVPVRLFQQNET---ILGYWF 249

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAE 233
            +  HIL+DE QDT+ IQ+++IR L  +    KN  +   R++F VGD  QSIYSF  A+
Sbjct: 250 NQFKHILVDEYQDTNRIQYDLIRLLCTNGETRKNKWNWQDRSIFVVGDADQSIYSFRMAD 309

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
              +L  +        +     ++++L  ++RS  +IL   +++             +T 
Sbjct: 310 FTILLNFQSDFGDGLPD-DTTQTMVKLEENYRSCENILQAANQLIENNTQRIDKILKATR 368

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
           +I                             +        D   +       A  +   I
Sbjct: 369 SI----------------------------GEDIYCYKADDERDE-------AGFVVSKI 393

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +   +          +      +L R    +               I       F   
Sbjct: 394 KQLKQENP--------ELNWGSFAILYRINAHSRSFEDAL----VKNNIPYNIVGGFRFY 441

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK 472
           D   IKD +A  + I++  D +S + ++ +P     +  I  + T   E    ++E I  
Sbjct: 442 DRQEIKDAVAYLKLIVNPSDTVSLLRIINTPRRGIGKSSIDALVTASQELGVPLWEIITD 501

Query: 473 ------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
                  A           K I +     +F S  +   L++       +   +  +E  
Sbjct: 502 ETSVNTLAGRAAKSVNQFAKMIQDFQAQTEFLSAAEMLDLVMEKSGYVAELQQKGTDEAQ 561

Query: 527 ---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKG 582
              + + E  N  L+ ++    +   L + LE    +           +V +MT+H+AKG
Sbjct: 562 SRIENIGELFNAVLQFQEEYEET--SLQAYLENASLSSDLDSLKEGDEKVSLMTLHSAKG 619

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFLV     +F H       +                                  
Sbjct: 620 LEFPVVFLVGLEEGLFPHSRSLNDPLS--------------------------------- 646

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNT 670
             EE  RL YVG+TRA +QL +      
Sbjct: 647 -LEEERRLCYVGLTRAQEQLFLTFAKTR 673


>gi|167631048|ref|YP_001681547.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1]
 gi|167593788|gb|ABZ85536.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1]
          Length = 731

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 113/722 (15%), Positives = 227/722 (31%), Gaps = 134/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
           G    ++   +   +  L      S  +             + ++   L           
Sbjct: 29  GAGSGKTRV-LTHRIGHLIEQCRVSPFHILAITFTNKAAAEMRERLGRLIGPRAHDVWVS 87

Query: 65  RFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS------------QDEFIK 109
            F       L +        ++ +  + + +   LKE LK+                   
Sbjct: 88  TFHSTCMRILRKDGEKLGYDRSFVIYDYDDQQRLLKECLKELNIDEKRFKPQAVGAAISS 147

Query: 110 IRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            ++R      F+         ++  +   Y++  K +  +DF+DL++N   L ++     
Sbjct: 148 AKNRLVGPVAFERQAYDHFAQISAKVYHIYQKKLKAHNAMDFDDLLVNGVCLFREFPH-- 205

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +         +I +DE QDT+  Q+ +++ L + +          R L  VGD+ QSIY
Sbjct: 206 -VLDNYQDRFRYIHVDEYQDTNHAQYVLVKLLADKY----------RNLCVVGDDDQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  +R   +          +++L  ++RST  IL   + V       +  
Sbjct: 255 GWRGADIQNILDFERDYPEAV--------VLKLEQNYRSTGKILEAANAVVGNNRGRKSK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              +                      V  Q +++ +                      AR
Sbjct: 307 KLWTQNPSGQ--------------PIVAYQGETEHDE---------------------AR 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I  TI  +  ++             +D  +L R    + ++            I     
Sbjct: 332 YIVRTIKRLSESENR---------PYRDFAILYRTNAQSRVLEEHF----MYAGIPYRIF 378

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                 +   IKD++A  RFI +  D +SF  ++  P     +  + K+           
Sbjct: 379 GGLRFYERKEIKDIVAYLRFISNPADAVSFRRVVNVPKRGIGDATVQKLLEHADSEGWTV 438

Query: 468 EYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                                   + I EL   A           IL      ++  +  
Sbjct: 439 GEALARVGEVPGLSRAVKALSAFGQMIEELRREAPSLLVTQIVEAILNRTGYVRELEAEK 498

Query: 522 GNE---VIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             E    I+ + EFL+ T   ++     +L+E ++ +     T       + + V +MT+
Sbjct: 499 TEEAKGRIENIKEFLSVTKEFDRTADDKTLEEFLAGVSLVSDTDNYN--EDEDAVVLMTM 556

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE PVVF+      VF H  +                                  
Sbjct: 557 HSAKGLEFPVVFVAGMEEGVFPHSRV---------------------------------- 582

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             +++  EE  RL YV +TRA ++L + +    +    +        + +   +    + 
Sbjct: 583 QFEETQVEEERRLCYVAITRARERLYLARAWRRTLFGNTVSNKPSRFLEEIPASLLVEED 642

Query: 698 IK 699
            +
Sbjct: 643 DR 644


>gi|238019225|ref|ZP_04599651.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748]
 gi|237863924|gb|EEP65214.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748]
          Length = 729

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 105/615 (17%), Positives = 204/615 (33%), Gaps = 117/615 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +  +YE   +KN  LDF+DL++    LL+  +    +  K  +   +++IDE QDT+
Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSNEA---VLDKYSKRFRYVMIDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L   +          + +  VGD  QSIY++ GA+ + +L  ++       
Sbjct: 226 HAQYLLAKLLASHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 + I+L  ++RST  IL   + V    E     +                     
Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIENNEGRPKKN--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       D     + + + +  +           A  I  TI+               
Sbjct: 307 LW------TDKTEGAKIQHFIAQSEHEE--------AAFIGDTIAKKHD---------IH 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D+ +L R    + ++            +           D   IKD++A  R + 
Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482
           +  DDLS + ++  P  +     + K+    R    +++  + +             K +
Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVAKLQDYARANGTSLFMTLTQLHLVDTIKGKTKEKLE 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
                I  L+   +  +  D    IL       Q       +     + + E L+     
Sbjct: 460 EFGILIFTLVAEMEDRTVLDILESILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519

Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +  + +  +++ + ++             +   V +MT+H AKGLE P+VFL      +F
Sbjct: 520 QDTNPTGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                      +     EE  RL YVG+TRA
Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717
             +L I   +  +   +++       + +      + ++  +      K     +   T 
Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPEELVDGLRAKRKVPDDIKRHVPQHMSVTS 663

Query: 718 HPENTPLEREETIKQ 732
            P   P+ R E I  
Sbjct: 664 RPVTKPIVRNEVIAD 678


>gi|307243582|ref|ZP_07525727.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM
            17678]
 gi|306493023|gb|EFM65031.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM
            17678]
          Length = 1310

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 153/999 (15%), Positives = 310/999 (31%), Gaps = 162/999 (16%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRD--RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            + I K    +   +K  QD      D  R      +    A   + K     Y +  K  
Sbjct: 325  KIIKKMVDSIISDIKSIQDRIYISLDEVRLELDMAYPYMRAVSNITKRFRQAYRQKLKSL 384

Query: 145  CVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
             ++DF  +     D+L  R       + I          + IDE QD++++Q  ++ +++
Sbjct: 385  GLVDFSYITHTALDILIDRSGGSLEPSKIALAYRDLYEEVFIDEYQDSNMVQELILSTIS 444

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                      +SP   F VGD KQSIY F  A P+  +++       +    +    I L
Sbjct: 445  ---------RTSPGNRFMVGDVKQSIYRFRQAMPEIFMKKYDEY-AISQGPIEAGRKILL 494

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI------------------ 302
              +FRS+A +L   + VF           D T   R   S +                  
Sbjct: 495  YNNFRSSAQVLEACNHVFMSIMRKATGELDYTDEERLNPSAVFKELDYDSIDESVYRDLG 554

Query: 303  -----------------GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                                G V++       ++   + +      +       S    +
Sbjct: 555  NDSDNTGITPGLSMENFNIGGPVEVRLVDKVFNEDGLDLEGVDLEDFRSISSFRSQCQAI 614

Query: 346  ARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
               I   ++N      +F     K R I+ +DI+VL R              + +   I 
Sbjct: 615  GAYIDQVVNNREKPYLVFDRKLDKYRKIEYRDIVVLFRS---LKFRVEDIEDVFSQLGIP 671

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
            +  +        L +     L R I +   D+  + +++SP++ F   D   +     ++
Sbjct: 672  IYSDLGGDYFSTLEVSIFENLLRIIDNPRQDICLLSVMRSPIYKFKPSDFALLRLLDKDS 731

Query: 464  ETVYEYIQKFANCGIS-------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +     ++ +                   +  + +  I     ++      +F   +L  
Sbjct: 732  DIYGLLVKLYEMDQDELDNLDQDYKDLRARLVYFMDQIKAYRKMSSLMPLDEFIWFLLKD 791

Query: 511  KKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRA 564
                        G    + L  F       E+ S+  L   ++ +++           + 
Sbjct: 792  TGYYAYVGGLELGQHRQNNLILFFERARTFEKTSFKGLFNFVNYIDRVKTRGSDLGEAKE 851

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             S + N VR+MT+H +KGLE P+V +     +        ++ +   L   P I     +
Sbjct: 852  LSGDANVVRLMTIHKSKGLEFPLVIVAKADGKFNFKSSDHRLSLHQDLGYGPKIIDKSKR 911

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT---- 680
                +   + + K ++   + E  RLLYV MTRA ++L+   + +  ++K    ++    
Sbjct: 912  INFPSMAKTYIDKKMELEQEAEEMRLLYVAMTRAKEKLVFFANIDDYSKKLDEWKSKLRD 971

Query: 681  ---------------WYDMVYDSFHNDERVKKI--------------KLTNSINKDEWIA 711
                           + D +  S  N E   K                    I+ ++ +A
Sbjct: 972  QDGRIESFEILNSRTYLDWIMMSIANLEVRGKALDARGKECDYMGYKDTNWLIDVEDKLA 1031

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIP---KKLFSPIKNDINEPYILNPSTIDTKGKT 768
                    EN          + ++E+K P     +  P     +     + S  + K   
Sbjct: 1032 VFKRAKDIENRVEPIRNMPLEPVEEEKDPGRKPTIVKPYAYQASALKPASISVSEVKKII 1091

Query: 769  NLESLLSDN--------------------------QTFNRGLIIHKLLQVIFTLPEHKRK 802
              E                                    +G I H +++++     ++ +
Sbjct: 1092 EAEDQTKYENMYMSRTIPDLKTPSFMHTSKTKISYSPGEKGTIFHLVMELLDFEGLYRLR 1151

Query: 803  NFITSYCTKNAKLWPAKEYKNLLL----------SITRLLENPMMTTAMSCDS----YSE 848
                    K          KN+L            I   ++ P+        S    + E
Sbjct: 1152 EDTKGLNDKIGADLQGLIDKNILRPEEVGTVNRKWIADFVKTPIFARLSQAASQGLLHRE 1211

Query: 849  VSVSGKINCPK----------KDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIP 897
             ++   I   +          + +++ G +D        ++ + +YKT +      E I 
Sbjct: 1212 TAIDYNIGLTEIYKYESIDESERMMLVGIVDVFFEDQDGDLVLLDYKTDYVSKDRYEDIV 1271

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
              +  QL +Y + L+D    +     +   S   +    
Sbjct: 1272 ARYKPQLDLYARALEDISGKRVKEKYIYLFSVGDLVSYD 1310


>gi|326792061|ref|YP_004309882.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326542825|gb|ADZ84684.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 781

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 105/587 (17%), Positives = 197/587 (33%), Gaps = 115/587 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   K+N  +DF+DL++NT  L K+      +      +  +IL+DE QD
Sbjct: 168 KMLAKIYEKYQGKLKENNAMDFDDLLVNTYLLFKE---CPDVLDYYQSKFRYILVDEYQD 224

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q++++  L + +          + L  VGD+ QSIY + GA+   +L  ++     
Sbjct: 225 TNGAQYKLVEMLAQGY----------QNLCVVGDDDQSIYGWRGADITNILGFEKDF--- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I+L  ++RST +IL   + V +  +  +  +                   
Sbjct: 272 -----ADATVIKLEQNYRSTKNILDAANSVVAHNKGRKAKA------------------- 307

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW +     +    P               ++    A  IA TI + I          
Sbjct: 308 --LWTESEEGENISIIP--------------TNNEYQEAETIANTIIHAIENGER----- 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + KD  +L R    + ++            I           +   IKDL++  + 
Sbjct: 347 ----EYKDFAILYRTNAQSRVLEEKL----ITGAIPYRLLGGTRFYERKEIKDLVSYLKV 398

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG-------ISK 480
           + + +DD++   ++  P        +  I       +  +    +              K
Sbjct: 399 VCNSKDDIAIKRIINVPKRGIGAASVNNIEEYAERNQMDFLEAARLCKEMGILGAGPSQK 458

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTL 537
                  I EL  +A+          I+   + R       G+   D    +DE ++ T+
Sbjct: 459 VLGFTGLIDELQELAEENDIKLLLETIIEKTEFRNHIRMTEGDTAEDRLSNIDELVSKTI 518

Query: 538 RN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              E     SL E + E+             + N V +MT+H+AKGLE PVVF+      
Sbjct: 519 HYMETAEDPSLGEFLEEVALVADIDNYD--EDSNSVVLMTLHSAKGLEFPVVFMPGVEEG 576

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F                                              EE  RL YVG+T
Sbjct: 577 LFPSYMSLT---------------------------------EGDDKLEEERRLCYVGIT 603

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           RA ++L +      +   ++        + +       + ++   N 
Sbjct: 604 RAREKLFMLYADQRTMFGRTQYSAPSRFIRELPKEVTNLAQLDKEND 650


>gi|238854177|ref|ZP_04644524.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4]
 gi|238833253|gb|EEQ25543.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4]
          Length = 747

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 130/760 (17%), Positives = 231/760 (30%), Gaps = 135/760 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110
           F  L    L +            I   +  L    +  +D                    
Sbjct: 90  FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 149

Query: 111 RDRFNTYKM--FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T K    ++T     +   + A Y+   K++ ++DF+DLI+ T  L KK      
Sbjct: 150 KNDLLTPKDFKAQATSPFEKVTAQVYAEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
             +    +  +IL+DE QDT+  Q+++  +L   +          + +  VGD  QSIY 
Sbjct: 207 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   Q        + + I+L  ++RST  IL   + V    +N +   
Sbjct: 257 WRGANMENILNFEHDYQDD------EVNTIKLEQNYRSTGHILDAANSVIKNNQNRKPKK 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         + +  + ++            A  +  +
Sbjct: 311 ---------------------LW-------TDKGDGDKINYYRA---QSGNDEALFIVSK 339

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I                    KD  VL R    +  +            I      
Sbjct: 340 INEEIKEHHRD-------------YKDFAVLYRTNAQSRNVEEAL----VKSNIPYRIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKD++A  + + +  D +SF  ++  P        + K     ++ +   E
Sbjct: 383 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 442

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              K                     + + I  ++  S       +L     ++   +   
Sbjct: 443 ETFKNLSLAPITGRPAKTLATFGTALKDAIEYSKTHSVTGLTEKLLADFGYKEALENEHT 502

Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E     + L+EFL  T R       E    ++L + +SE+               N+V 
Sbjct: 503 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEEGLFPLSRATGDPS------------------------- 595

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                      EE  RL YVG+TRA  +L I    + +   +         + +    D 
Sbjct: 596 ---------ELEEERRLAYVGITRAEKKLYITNAFSRTMYGRPQNNQPSRFIDEIEDKDL 646

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
                  +NS     +             P  R ET K+ 
Sbjct: 647 EFVNPVQSNSAMSIPFAKSSERATSQVYRPKTRIETAKKA 686


>gi|261409570|ref|YP_003245811.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10]
 gi|261286033|gb|ACX68004.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10]
          Length = 776

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 120/723 (16%), Positives = 227/723 (31%), Gaps = 133/723 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   + +  +             + ++   L            
Sbjct: 33  GAGSGKTRVLTHRIAYLIATRKAAPWSILAITFTNKAAREMQERVSKLVGREGQDIWVST 92

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110
           F  +    L +            I   +  L                 + K  Q      
Sbjct: 93  FHSMCVRILRRDIERIGFTSNFSILDSTDQLSVIRNVMKQHNIDPKKFEPKAVQAAMSAA 152

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   + + ++        TL   +   Y++  K N  LDF+DLI+ T  L K+      
Sbjct: 153 KNELISPQQYEQKAGDYFETLVAKVYTEYQKRLKSNNSLDFDDLIMTTIQLFKE---VPE 209

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ + R L +          S   +  VGD  QSIY 
Sbjct: 210 VLDFYQRKFQYIHVDEYQDTNRAQYMLCRMLAD----------SHHRICVVGDSDQSIYR 259

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++           +   I L  ++RSTA+IL   + V  +    +  +
Sbjct: 260 WRGADITNILNFEQDYP--------EARTILLEQNYRSTANILNAANNVIGLNTGRKPKN 311

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       +    P+ + +    +              
Sbjct: 312 ---------------------LW------TEQGEGPKIKVFRGDTEHDEGY--------F 336

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   IS  I                +D  +L R    + +I  +         I      
Sbjct: 337 VTSEISKNIKDGK----------SYQDHAILYRTNAQSRVIEEIL----IKSDIPYQIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKD++A  R I + +DD+S   ++  P  +  +  + K+     E      
Sbjct: 383 GIKFYDRKEIKDMLAYLRLISNPDDDISLTRIINVPKRSIGDTTVAKLAAAAGERGISIF 442

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +      FA    +        I  L  + +F S  +    IL   + R +  +   
Sbjct: 443 RVLEIVDDLGFAGRTRNALVGFYDMIAALSRMVEFLSVTELTEKILEMSEYRLELQNENT 502

Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMT 576
            E    ++ +DEFL+ T   E+ N   SL   +++L                 + V +MT
Sbjct: 503 IESRSRLENIDEFLSVTQEFEKNNEDKSLVSFLTDLALIADIDSMNDDEEDRDDAVVLMT 562

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE PVVF++     VF H      +                             
Sbjct: 563 MHSAKGLEFPVVFIIGMEEGVFPHSRAFMDNEELEEERRL-------------------- 602

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                          YVG+TRA  QL +      +   ++        + +     +   
Sbjct: 603 --------------AYVGITRAEKQLFLSCARMRTLFGRTTANMPSRFLEEIPEELKEDT 648

Query: 697 KIK 699
           ++ 
Sbjct: 649 QMA 651


>gi|254696353|ref|ZP_05158181.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 467

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 136/461 (29%), Positives = 211/461 (45%), Gaps = 25/461 (5%)

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           +  +L A   R++ ++R G E  D++DEF N+ L  E+     LQ  +  LE   P IKR
Sbjct: 1   YARVLSADGARRKLLARLGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAAAPEIKR 60

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI--PIW 621
                 +EVRIMT+H AKGLE  VVFLVD GS V++     K+       D P +   +W
Sbjct: 61  ELDQGRDEVRIMTMHAAKGLEGAVVFLVDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLW 120

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
            P S  +    +  I+ LK   +EEY RLLYVGMTRA D+LIIC +       + +  TW
Sbjct: 121 QPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLIICGYRG----TRESGETW 176

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
           + +V D+           +T         A       P +     EE          +P 
Sbjct: 177 HRLVEDALAAKSETFVHPVTGV-------AARRYRKTPRSFIEINEEDQAGATSLPPLPH 229

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------------DNQTFNRGLIIHKL 789
               P+K +   P  L PS      + + E  L                   RG  IH L
Sbjct: 230 DYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDLSSPVLQPGTGAPAFALRRGTAIHML 289

Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
           LQ +  +   KR++    Y  + A  WP  E      S+  +L++P      +  S  EV
Sbjct: 290 LQYLPDVAPEKREHLAADYLARIAADWPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEV 349

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
           +V G I+   +D  +SG+ID+IS+ +  + I +YKT+   P+ +E +P  + AQL++Y +
Sbjct: 350 AVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYKTNRPPPKTLEAVPSAYRAQLALYRE 409

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
           +L+  YP + +   L++   P + ++P   L+ A   +   
Sbjct: 410 LLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAMGALKDT 450


>gi|319892948|ref|YP_004149823.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162644|gb|ADV06187.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 731

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 117/718 (16%), Positives = 230/718 (32%), Gaps = 128/718 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ Q L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVQALVGEEAEVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK+               E  K+
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKRENIDPKKYEPRIFIGEISKL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    ++        +   +   Y++   +N  LDF+DLI+ T  L ++      
Sbjct: 148 KNDLLTPAKAEAEADDFYSRMVATVYKGYQQQLVRNQALDFDDLIMTTIRLFER---VPD 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ ++  L + F          + L  VGD  QSIY 
Sbjct: 205 VLDFYQNKFQYIHVDEYQDTNTAQYTLVNMLAQKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA    +L  ++               I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGANIHNILSFEKDYPN--------ARTIFLEQNYRSTKTILQAANEVIRHNTERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +    ++  +        +          
Sbjct: 307 ---------------------LW-------TANQQGEKIHYYEAMSERDET-------EY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + KD+ VL R    + ++            I  V   
Sbjct: 332 VVREIFKQQKKGK----------RYKDMAVLYRTNAQSRVLEETF----LKSNIPYVMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI         T++
Sbjct: 378 GQKFYDRKEIKDLLSYLRLIANSADDISLQRIINVPKRGIGPSSVEKIATYAVDHELTMF 437

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +      +           + +  L+   +F    +    +L     R+       
Sbjct: 438 DALAEVDFIGLSKKVTQAAAEFYQLMSNLMQEQEFLEVSEIVDEVLEKSGYREMLEREQS 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++  +  E+N+    Q LI+ L           +   + V +MT+H+
Sbjct: 498 IESRSRLENIDEFMSVPVDYEKNTPLEEQSLINFLTDLSLVADVDGANLEDGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   I+  
Sbjct: 558 AKGLEFPIVFIIGMEESIFPHIR--------------------------------AIQSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                EE  R+ YV +TRA ++L +   ++ +   +         + +       + +
Sbjct: 586 SDHEMEEERRISYVAITRAEEELYLSHATSRTLFGRPQSNARSRFLNEIPEELLDLPE 643


>gi|166033310|ref|ZP_02236139.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC
           27755]
 gi|166027667|gb|EDR46424.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC
           27755]
          Length = 763

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 118/713 (16%), Positives = 229/713 (32%), Gaps = 135/713 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L            
Sbjct: 38  GAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAAEMRERVDNLVGFGSESIWVST 97

Query: 66  FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  +    L +         N    + + +   +++  K  Q +    ++R     +  +
Sbjct: 98  FHSMCVRILRRHIALLGYDTNFTIYDTDDQKTLMRDVCKLLQIDTKIYKERMLIGTISHA 157

Query: 123 TLASL-----TL----------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
               L      L             +   YE+  + N  LDF+DL++ T  L + +    
Sbjct: 158 KNEMLTPEEFRLQAGGDFHQKKIADVYEEYEKQLRANNALDFDDLLLKTVQLFQTQHD-- 215

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     +   +I++DE QDT+ +Q+E++R L           S  + L  VGD+ QSIY
Sbjct: 216 -VLEYYQERFRYIMVDEYQDTNGVQFELVRLLA----------SRYQNLCVVGDDDQSIY 264

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA+ + +L  +++          K ++I+L  ++RSTA+IL   + V S     +  
Sbjct: 265 KFRGADIRNILDFEKVF--------TKAAVIKLEQNYRSTANILNAANAVISHNHGRKDK 316

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW           +  + ++  +  +  +       A 
Sbjct: 317 T---------------------LW-------TDNEDGDKIAFRQFDTAFDE-------AE 341

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I   +                +D  +L R    + +             I     
Sbjct: 342 YIVSDIKEHVEKGE---------CDYQDNAILYRTNAQSRMFEEKF----VTANIPYKII 388

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                     IKD++A  + + + +DDL+   ++  P        I ++       E   
Sbjct: 389 GGINFYARREIKDILAYLKTVDNGQDDLAVRRIINVPKRGIGLTSINRVQEYAAMHEKGI 448

Query: 468 EYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
               K A+       G+SK +  +  I      A+  + H+    I+      +   +  
Sbjct: 449 YECLKGADLIPDIGRGVSKLESFVALIEHFKVDAKELTLHELMQEIIDETGYIESIQAES 508

Query: 522 GNEVI---DVLDEFLNFTLRNEQ-----NSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             E     + +DE LN  +  E+     +   +L   + E+             N + V 
Sbjct: 509 EIEAQARIENIDELLNKVVAYEEVCEEHDEPVTLSGFLEEVALVADIDN--LDENSDYVV 566

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE P V+L      +F                                   
Sbjct: 567 LMTLHSAKGLEFPRVYLAGMEDGLFPSYMTVT---------------------------- 598

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                      EE  RL YVG+TRA  +L +          ++        + 
Sbjct: 599 ----ADDPDELEEERRLCYVGITRAQSELTMTCARRRMVRGETQYNKMSRFLK 647


>gi|283796111|ref|ZP_06345264.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
 gi|291076326|gb|EFE13690.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
          Length = 830

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 111/713 (15%), Positives = 223/713 (31%), Gaps = 131/713 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   +            
Sbjct: 28  GAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAAEMRERVDQIVGFGSESIWVST 87

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF-- 120
           F       L     +     +    + + +   +K+  K+ Q +  + ++R    ++   
Sbjct: 88  FHSSCVRILRRHIDRLGYDTSFTIYDTDDQRTLMKQIFKRLQVDTKQFKERSVLGRISSL 147

Query: 121 --KSTLASLTLA-----------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +       L              L   Y++A K N  LDF+DL++ T +L    +   
Sbjct: 148 KNEMIRPDEALTNAGGDFGEKKIAELYGEYQKALKNNNALDFDDLLVKTVELF---EADQ 204

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +         +I++DE QDT+++Q++++  L   +          R +  VGD+ QSIY
Sbjct: 205 EVLAYYQNRFRYIMVDEYQDTNMVQFKLVDLLAGKY----------RNICVVGDDDQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA+ + +L  ++              +I+L  ++RST +IL   ++V       +  
Sbjct: 255 KFRGADIENILSFEKAFP--------GAQVIKLEQNYRSTQNILNAANEVIRNNRGRKDK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +  +           G+   V+L +   +  +                          A 
Sbjct: 307 TLWTAN---------GEGERVRLAQFDTAYEE--------------------------AD 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            IA  I              K      D  VL R    + L+          + I     
Sbjct: 332 YIACDIKA---------ESAKENSPFSDFAVLYRTNAQSRLLEEKM----ILHSIPYRLV 378

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                     IKD+++  + I + +DDL+   ++  P        + ++         + 
Sbjct: 379 GGVNFYQRKEIKDILSYLKTIANGQDDLAVQRIVNVPKRGIGATSMGRVTAFASAGGMSF 438

Query: 467 YEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           Y+ + +            K     + I +        S  +    IL     R++  +  
Sbjct: 439 YDALLRVKAVPSIGKAADKIGVFTEQIEDFKARLGELSLKELIEEILENTGYRKEIEAEG 498

Query: 522 GNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             E       + E +N  +   +     +L   + E+             + N V +MT+
Sbjct: 499 EVEAETRLQNIQELINKAVAYWDNEENPTLDGFLEEVALVADVDSMD--ESENRVVLMTL 556

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P V+L      +F                                       
Sbjct: 557 HSAKGLEFPHVYLSGMEDGLFPSSMSIMSDDGD--------------------------- 589

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                  EE  RL YVG+TRA ++L +          ++        V +   
Sbjct: 590 -----AVEEERRLCYVGITRARERLTLTAARQRMTNGETRFSRLSRFVEEIPP 637


>gi|304405679|ref|ZP_07387338.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9]
 gi|304345718|gb|EFM11553.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9]
          Length = 801

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 114/758 (15%), Positives = 225/758 (29%), Gaps = 152/758 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  +             +  +   L   S +      
Sbjct: 35  GAGSGKTRVLTHRIAYLIEKKRVAPWSILAITFTNKAAREMQDRVAKLVGPSGSDIWVST 94

Query: 66  FSLLSSFFLTQKFT------------------------PQKNIITQEINKKSPDLKEKLK 101
           F  +    L +  +                         ++NI T++I      ++  + 
Sbjct: 95  FHSMCVRILRKDISRIGFTSSFSILDSGDQLSVIRTIMKEQNIDTKKIEP--KTIQAAIS 152

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
            +++E   +       K+         +A  +   Y++  + N  LDF+DLI+ T  L  
Sbjct: 153 SAKNEL--LSPERFAAKVGDYFE---QIAANVYEQYQKRLRANNSLDFDDLIMTTIKLFT 207

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                  +      +   + +DE QDT+  Q+ + R L +              +  VGD
Sbjct: 208 DEPD---VLQFYQNKFRFLHVDEYQDTNRAQYMLCRMLAD----------KHHNICVVGD 254

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             QSIY + GA+   +L  ++   +           I L  ++RST++IL   + V    
Sbjct: 255 SDQSIYRWRGADITNILNFEQDYPES--------KTILLEQNYRSTSNILNAANAVIGNN 306

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
              +                        LW       D         + +  +       
Sbjct: 307 TGRKPKR---------------------LW------TDQGAGDAISIYQADSEHDEGY-- 337

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  +   I                  +  D  +L R    + +I  +         
Sbjct: 338 ------FVTGEIGKHYKEGR----------KYADHAILYRTNAQSRVIEEIL----IKSD 377

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQR 460
           I           D   IKDL+A  R I + +DD+S   ++  P     +  + KI     
Sbjct: 378 IPYQIVGGVKFYDRKEIKDLLAYLRLISNPDDDISLTRIINVPKRGIGDTTVGKIAEEAA 437

Query: 461 HETETVYEY--------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
               +++              A    +        I  L  +  + S  +    +L   +
Sbjct: 438 RRGISMHAALGTLDEFGGLDVAGKTRAALVQFRDMITNLTRMVDYLSVTELTEKVLEMSE 497

Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSAN 568
            R +       E    ++ ++EFL+ TL  E+ N   SL   +++L              
Sbjct: 498 YRLELQRENTLESKARVENIEEFLSVTLEFEKNNEDKSLVAFLTDLALIADIDSMNKEEE 557

Query: 569 ----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                + V +MT+H+AKGLE PVVF++     VF H      +                 
Sbjct: 558 NGQPQDAVVLMTMHSAKGLEFPVVFIIGMEESVFPHSRAFMDNEELEEERRL-------- 609

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                                      YVG+TRA  +L +      +   ++        
Sbjct: 610 --------------------------AYVGITRAEKRLYLLCARMRTLFGRTATNPPSRF 643

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
           + +   + +++         +                T
Sbjct: 644 LMEIPEDVKQMASPAGRIGGSGGGLGYSGGVAGGWSAT 681


>gi|283782861|ref|YP_003373615.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
           409-05]
 gi|283441838|gb|ADB14304.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis
           409-05]
          Length = 1023

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 107/621 (17%), Positives = 201/621 (32%), Gaps = 115/621 (18%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L     T+     K    + I  K  D K  L   +++     + +      +    +
Sbjct: 254 ERLVKIIATELNVDIKRFTPRSILGKISDCKNSLITWREQLDMYANDYKPGVAGQQIAHA 313

Query: 127 L---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A Y+    +   +DF+DLI+ T  L+++   +A        +  +IL+D
Sbjct: 314 GNSEAVYATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPEAA---QYYRHKFRYILVD 370

Query: 184 EVQDTSLIQWEVIRSLTE-----DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           E QDT+  Q+E+IR L       +       +++P ++  VGD  QSIY+F GA+ + + 
Sbjct: 371 EYQDTNHAQYELIRELAGVDVKQNSANPSQQNNTPASITVVGDSDQSIYAFRGADIRNIQ 430

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             ++             + I L  ++RST  IL   + V S  +  +             
Sbjct: 431 DFEKDFPN--------ATTIMLEQNYRSTQTILDAANAVISHNQGRKPKK---------- 472

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                      LW  +                          SA   A  +A  I+ + G
Sbjct: 473 -----------LWTALGKGTPITGYAA--------------DSAQQEAAWVAQEIARLAG 507

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +          +   D+ ++ R    +  +            +           +   +
Sbjct: 508 EE---------GVAYSDMAIMYRANAQSRSLEDAL----VKAGLPYQLVGGTKFYERREV 554

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA--- 474
           KD +A  + + + +DD++   +L  P           +    + +  + ++ ++      
Sbjct: 555 KDALAYLQSMANPDDDVNMRRILNVPKRGLGARAEALLTLYAQTQGVSFWQALEHLESIE 614

Query: 475 ---NCGISKFQHVIKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
                  +K +   + +H LI         P      IL      +        +    +
Sbjct: 615 GMPTRTATKLKEFRELMHNLITCMQNDDSKPSKVIDSILNDSGLLEDLQRSEDPQDAARV 674

Query: 527 DVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
           D L +  +     EQN+   S+   +               + +  +V +MT+HTAKGLE
Sbjct: 675 DNLSQLQSVAAEYEQNTPDASVAGFLETTALVADSDQLPDENEDTGKVTLMTLHTAKGLE 734

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVVFL       F H                                            
Sbjct: 735 YPVVFLTGMEQGTFPHSRAL----------------------------------EDDGEL 760

Query: 645 EEYNRLLYVGMTRASDQLIIC 665
            E  RL YVG+TRA  +L + 
Sbjct: 761 CEERRLAYVGITRAKQRLYVT 781


>gi|257456155|ref|ZP_05621352.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii ATCC
            35580]
 gi|257446241|gb|EEV21287.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii ATCC
            35580]
          Length = 1167

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 151/924 (16%), Positives = 287/924 (31%), Gaps = 119/924 (12%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            K   DL   L ++      +   ++ Y   +       L   L   +   KK+  +L F 
Sbjct: 283  KACKDLCSALSENSGRLQSL---YHFYAHKEQMQKIYALCSVLQERFIAEKKRRSILHFG 339

Query: 151  DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
            D+     D L           K       I+IDE QD + +Q +++  L E       + 
Sbjct: 340  DIAQLAVDALITDPDLRLFYKKQTHR---IMIDEFQDNNSLQRDLLFLLAEKEARTDQSI 396

Query: 211  SSPRTL-----FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
              P  L     F VGDEKQSIY+F GA+        +  ++     G   + I L  ++R
Sbjct: 397  PKPDELVPDKLFFVGDEKQSIYAFRGADVSVFRMLSQDLRQ-----GGSSASINLQTNYR 451

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            +  D+L   +  F     ++     +       +  I  +        ++ Q D     +
Sbjct: 452  TEPDLLNFFNTAFMQVFYSEVNQPLTGGVPAFEAEFIPILSR-DAVPNLMPQTDILFIDK 510

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRK 382
            +             +     A  +A  I+++     +  +      R     D  VL+R 
Sbjct: 511  KRFANPSDTDTVMFTPIECEAYTLAQKIADIHAERYLVYDEALHATRPCTWSDFAVLLRA 570

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                 +     R  K    I  +   +  L     + D+ AL R  +   D   +   L+
Sbjct: 571  STHQAVYERFFRAFK----IPYISVQQKGLFHDAPLNDICALLRLAVYPNDRAVYAQTLR 626

Query: 443  SPLFNFSEDDIFKICTQRHETE---TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            SP    S+    ++     E E         ++        F         +    +  S
Sbjct: 627  SPFVRLSDRSFTRLMLYSLEHEGQPFNPAAAEELEAEDRQYFLTACALFERIQGYIKKKS 686

Query: 500  PHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISEL- 554
              +  T +   +  R   ++           D L          +Q+  + +  LIS + 
Sbjct: 687  NAELITALWYDEGYRYILLTEPRYHRYLELYDYLFALAVKADEAKQSLSAFIDTLISYIH 746

Query: 555  -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
             E+    ++       + V+IMTVH +KGLE P+V + D G+   S      + +   L 
Sbjct: 747  AEERIEDMEIPLEHGGDAVKIMTVHKSKGLEFPIVCIPDCGNAGKSETKEGMVFLHKDLG 806

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-- 671
                +P       S N    +L +        E  RLLYV +TRA  +L++     T   
Sbjct: 807  PVIHLPPETKNDPSANIFFEELRQEANAKHLAETKRLLYVAVTRAKVRLVMSGVQETGCD 866

Query: 672  --------------------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
                                 +++   R+++ ++  +  +D           +       
Sbjct: 867  AEDLPEFPRGLEEIRQQLVQPQQEEKNRSFFQLLLPAVSDDIAGLHFAEVLPLPASTVQH 926

Query: 712  YE--------------WSTHHPENTPLEREETIKQLMDEQK--IPKKLFSPIKNDINEPY 755
                            +     +N PL     I     E+     +   +P+ +  +   
Sbjct: 927  TAEDRQRFNLDETRALYRQAAEKNFPLAEPRVIPATQFEKDTQWLRLSEAPLPSTEHTEK 986

Query: 756  ILNPSTID------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
             +  S                 G    E    +  +   G ++HK ++            
Sbjct: 987  EIAFSADAISATDAASTAKPVDGNIGAEQGEDELSSTEFGTLVHKAME------------ 1034

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                +  +   + PAK  + +       L +P    A                   +  +
Sbjct: 1035 --ARFLDRPC-ILPAKYAREVEKLCAAFLSSPFGQKAAEASFRK---TEYGFLTLYEGKL 1088

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN------ 917
            I G+ID +   +   +I +YKT   +       P  H  QL IY+  +++ Y        
Sbjct: 1089 IIGQIDLLFEYEDTAYIIDYKTDQKI------YPEKHRKQLLIYKTAVENFYKMEGFGQG 1142

Query: 918  ------KSLVCLLIYVSEPKVFII 935
                  K +   + Y+       +
Sbjct: 1143 TGGSQPKPVKAYIFYLRSKTAVEV 1166


>gi|296132369|ref|YP_003639616.1| ATP-dependent DNA helicase PcrA [Thermincola sp. JR]
 gi|296030947|gb|ADG81715.1| ATP-dependent DNA helicase PcrA [Thermincola potens JR]
          Length = 741

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 108/625 (17%), Positives = 208/625 (33%), Gaps = 116/625 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   K+N  +DF+DLI+ T +L +K    A +     +   +IL+DE QD
Sbjct: 165 EVGARVYELYQHKLKENNAMDFDDLIMKTVELFEK---FAQVLDYYQERFKYILVDEYQD 221

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +IR L   +          R L  VGD+ QS+Y + GA+ + +L  +R     
Sbjct: 222 TNHAQYRLIRLLAAKY----------RNLCVVGDDDQSVYGWRGADIQNILDFERDYP-- 269

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  +I+L  ++RST +IL   + V       +  S  +                
Sbjct: 270 ------EARVIKLEQNYRSTKNILAAANHVVKRNIGRKEKSLWTENEEGLLPVFF----- 318

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                         +       A  IA  I  +   +       
Sbjct: 319 ------------------------------RAQDQYQEAYYIAERIYRLHLEEDR----- 343

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 +D  VL R    + +I  +         I           +   IKD++A  R 
Sbjct: 344 ----PYRDFAVLYRTNAQSRVIEEVF----IKNGIPYTIVGGLKFYERKEIKDILAYLRV 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN------CGISK 480
           I +  D++S   ++  P     +  + KI     ++  + YE + +           +S 
Sbjct: 396 ISNPADNISLQRIINVPRRGIGDTTMGKIAEYANYQGISHYEALIRAEEIPGLTGRSLSP 455

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537
            +   + I      A+  S  +    +L      ++  +    E     + + EFL+ T 
Sbjct: 456 VKKFGQLIEAFRQTARHSSVTELVNEVLQQTGYIRELEAEKSVEAQTRLENIKEFLSVTK 515

Query: 538 RNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             +  +  + L++ ++E+          ++   + V +MT+H+AKGLE PVVF+      
Sbjct: 516 EFDARAAENRLEDFLAEVSLISDVD--EYTEGADAVVLMTLHSAKGLEFPVVFIAGMEEG 573

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H                                      L  S  EE  RL YVG+T
Sbjct: 574 IFPHS----------------------------------RSMLDNSQLEEERRLCYVGIT 599

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA ++L +      +    +        + +        +  +      +   +      
Sbjct: 600 RAKERLYLTAAWERNLFGNTMFNPVSRFIEEIPPALLDTEGGERRRHEQESREMFRGSRD 659

Query: 717 HHPENTPLEREETIKQLMDEQKIPK 741
               ++  +R         + +   
Sbjct: 660 KDRRSSFADRAHVSPVGSYKIEDRP 684


>gi|238926784|ref|ZP_04658544.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531]
 gi|238885316|gb|EEQ48954.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531]
          Length = 746

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 118/796 (14%), Positives = 233/796 (29%), Gaps = 144/796 (18%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
            +  L    V                 + ++  TL   +        F    +  L  + 
Sbjct: 39  RIANLLEHGVPPYRILAITFTNKAAREMRERVDTLIGDAAQDVWLSTFHSFCARLLRMEL 98

Query: 79  TP----QKNIITQEINKKSPDLKEKLKKS------------QDEFIKIRDRFN--TYKMF 120
                  KN +  +       ++E LK+             Q      ++R         
Sbjct: 99  EHYGRYAKNFVIYDAADSKGLIRECLKELNIDEKHTAPGAVQAHISDAKNRLLDVAAFTA 158

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           ++T         + A Y+   ++N  LDF+DL++ T +LL K +    +R K  ++  +I
Sbjct: 159 QATDFFAEQVAKIYALYQSKLQENNALDFDDLLMLTVELLTKNEE---LRMKYQKKFQYI 215

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+  Q+ + + L  +           R +  VGD  QSIY + GA+ + ++  
Sbjct: 216 LVDEYQDTNGAQYAITKLLAAE----------HRNICVVGDADQSIYGWRGADMRNIMNF 265

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           ++           + ++I L  ++RST +IL   + V       +               
Sbjct: 266 EQDYP--------EATVILLEQNYRSTKNILAAANAVIENNLTRKKK------------- 304

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                   +LW    +                  ++ + ++    A  I   +  +    
Sbjct: 305 --------ELWTDNPTGDRI--------------TIYEGATEKNEASYIVREVERLH--- 339

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     ++  DI VL R    +  I            +           D   IKD
Sbjct: 340 ------TMFHVKYGDIAVLYRTNAQSRNIEEAFYAT----GVPYAMVGSVRFYDRREIKD 389

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----------TETVYEYI 470
           ++A  R I +  D LS + ++  P        I ++     E             +   I
Sbjct: 390 IIAYLRVIYNPRDTLSLLRIINVPRRGLGPTSIARMMETAEEYRISLFEVITDAQLLSMI 449

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVID 527
            K +       +     +   +        H+    ++                  + ++
Sbjct: 450 PKLSAKVKVALEEFAAMVFTFMGQLGTRPIHEIVEDVIETSGYAAALEEEKKEDNRDRLE 509

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESP 586
            L EF++     +  +      L   L Q         +   +  V +MT H AKGLE P
Sbjct: 510 NLREFISVAKNFDDGAEEGENGLADFLAQIALISDVDQTEQSDGTVTLMTFHAAKGLEFP 569

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+      +F H                                      L  +  EE
Sbjct: 570 AVFMAGMEEGLFPHSRTL----------------------------------LDDTEIEE 595

Query: 647 YNRLLYVGMTRASDQLIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             R  YVG+TRA  +L +           +  S   +       ++V     +      +
Sbjct: 596 ERRTCYVGITRAERRLYLTYARQRTIYGRTEMSRPSRFLAEIPEELVEHKEADFFGGADL 655

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK-KLFSPIKNDINEPYIL 757
           +  ++I  +     +   +         + ++ +                K        +
Sbjct: 656 RAPSNIWSERSTRTQRKRYIAPPQHTAADGSVIRPDVSAAFKAGDAVRHSKWGDGRIVAI 715

Query: 758 NPSTIDTKGKTNLESL 773
           + S  D +        
Sbjct: 716 SGSGEDAELSIAFPGE 731


>gi|325972063|ref|YP_004248254.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324027301|gb|ADY14060.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 1104

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 137/921 (14%), Positives = 306/921 (33%), Gaps = 73/921 (7%)

Query: 43   NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
            + T+    +       +               +     +K    +   ++   +KE +++
Sbjct: 223  SKTVQTAREAALSLRSSLEACTSVEEKHRILCSALGYFRKPGAGKA--EQMLYIKETIEE 280

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                  K+    +         A L+  +   A Y++ K+++ VL F D+     D+L  
Sbjct: 281  FNQLRKKLCIARSVLLGSSQLQAVLSFMQEYIASYQKQKRQSGVLTFADISSLAVDILSS 340

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL-----F 217
                  +R+       +I+IDE QD +  Q +++  L+E      +    P  L     F
Sbjct: 341  N---KSLRHYYKMAYKYIMIDEFQDNNEQQKQLLYLLSERLDREGDGIPGPENLKADKLF 397

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGDEKQSIY F G++     R                  I+L  ++RS   ++   + +
Sbjct: 398  FVGDEKQSIYRFRGSDVSVFKRLS------WELCANGGRHIQLDTNYRSEPALIQWFNTL 451

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            F       G S ++  +                W +      S+C    + + S  D   
Sbjct: 452  FPSVMQNNGESFEADFSAL-------------GWREPSEGIQSKCTVLIKPYESKLDEDE 498

Query: 338  QESSA-SILARRIAYTISNMIGTDTIFSNGKKRVIQA--KDILVLVRKRKDTPLITFLTR 394
            ++++     A  +A  I  M+ TD+     +    +    DI +L+R            R
Sbjct: 499  EDAADTDAEAYAVASLIDEMLHTDSYLIPSETGPHRPATSDIALLLRTTSSQLSFEKALR 558

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 + I         L       D+ A+ + +L  +D  +++ +L+SP  N S+  + 
Sbjct: 559  ----RFNIPYTVQAARSLMLEAPANDMYAMLQLVLYPQDRHAYMTVLRSPFCNLSDFGMT 614

Query: 455  KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
            ++          +           S+ + V  +   L   +   S     +L+       
Sbjct: 615  EVL-----DCPCFSIPDSIGPEDRSRLEAVGAFYAHLKKASATASLSSLVSLLWYESGYY 669

Query: 515  QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANH 569
               ++    +V      FL+   + +Q    SL + +  L       ++  +        
Sbjct: 670  LSLVATPSYQVYTEHYAFLHRLAQMQQQQGKSLSQFVDFLRDNLAQNEKIENLEVIKEQE 729

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              V+I+++H +KGLE P+V + +TGS+  S +     +   S+     +P  + +++   
Sbjct: 730  EGVQILSIHKSKGLEFPIVVVANTGSKGRSEEDAVSTYQGISIPHYVSVPYHVSETRIET 789

Query: 630  NIVSDL---IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
               +          +  + E  RLLYV +TRA   +++    + +N   +       ++ 
Sbjct: 790  AKHAGQLLDKGTEAQLNRAELKRLLYVALTRAQTHVVVSGCFSKTNRSLAEDGRSSTLLL 849

Query: 687  DSFHNDERVKKIKLTN------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                +                     D   +  +     +    E+           +  
Sbjct: 850  MLAQSLGIDIDAPALEQGIVTVRSIADIAESLLYDQKREDEQAFEQRIDAAASFYAPREE 909

Query: 741  KKLFSPIKNDINEP-YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                 PI+  +      L   T         ++L S+ Q  + G  +H L + +   P  
Sbjct: 910  AYEMRPIRYAVTALHAPLFSETAKALPSLASDALFSEAQVADFGTFVHALCEQMVLQPSQ 969

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-----SEVSVSGK 854
                                  + ++     L    + ++    +        EV     
Sbjct: 970  AIDA-----LAMLPPSLGGVNQQQVIADALFLCHAFVGSSWYRTEVQPYPVSCEVGFFSL 1024

Query: 855  INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            +    + +++ G +D +   + +  + ++KT     +        H  QL  Y + +   
Sbjct: 1025 MEHEGRAVVVEGSVDLLIKRKDHYLVVDFKTDRFRDE------EVHRFQLQTYMQAMARI 1078

Query: 915  YPNKSLVCLLIYVSEPKVFII 935
            +    +   ++Y+ + +  ++
Sbjct: 1079 H-QCPVKGCVVYLRDVQNIVV 1098


>gi|282851210|ref|ZP_06260575.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1]
 gi|282557178|gb|EFB62775.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1]
          Length = 730

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 130/760 (17%), Positives = 231/760 (30%), Gaps = 135/760 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 13  GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 72

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110
           F  L    L +            I   +  L    +  +D                    
Sbjct: 73  FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 132

Query: 111 RDRFNTYKM--FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T K    ++T     +   + A Y+   K++ ++DF+DLI+ T  L KK      
Sbjct: 133 KNDLLTPKDFKAQATSPFEKVTAQVYAEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 189

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
             +    +  +IL+DE QDT+  Q+++  +L   +          + +  VGD  QSIY 
Sbjct: 190 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 239

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   Q        + + I+L  ++RST  IL   + V    +N +   
Sbjct: 240 WRGANMENILNFEHDYQDD------EVNTIKLEQNYRSTGHILDAANSVIKNNQNRKPKK 293

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         + +  + ++            A  +  +
Sbjct: 294 ---------------------LW-------TDKGDGDKINYYRA---QSGNDEALFIVSK 322

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I                    KD  VL R    +  +            I      
Sbjct: 323 INEEIKEHHRD-------------YKDFAVLYRTNAQSRNVEEAL----VKSNIPYRIVG 365

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKD++A  + + +  D +SF  ++  P        + K     ++ +   E
Sbjct: 366 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 425

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              K                     + + I  ++  S       +L     ++   +   
Sbjct: 426 ETFKNLSLAPITGRPAKTLATFGTALKDAIEYSKTHSVTGLTEKLLADFGYKEALENEHT 485

Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E     + L+EFL  T R       E    ++L + +SE+               N+V 
Sbjct: 486 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 543

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 544 LMTLHAAKGLEFPVVFLVGMEEGLFPLSRATGDPS------------------------- 578

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                      EE  RL YVG+TRA  +L I    + +   +         + +    D 
Sbjct: 579 ---------ELEEERRLAYVGITRAEKKLYITNAFSRTMYGRPQNNQPSRFIDEIEDKDL 629

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
                  +NS     +             P  R ET K+ 
Sbjct: 630 EFVNQVQSNSAMSIPFAKSSERATSQVYRPKTRIETAKKA 669


>gi|27383199|ref|NP_774728.1| hypothetical protein blr8088 [Bradyrhizobium japonicum USDA 110]
 gi|27356373|dbj|BAC53353.1| blr8088 [Bradyrhizobium japonicum USDA 110]
          Length = 1099

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 166/941 (17%), Positives = 327/941 (34%), Gaps = 96/941 (10%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNP-TILKKAQTLQQ-ASQTQCIEERFSLLSSFFLTQ 76
            D   +P     DI    +L+       T L   + L + A        R          +
Sbjct: 226  DHVDVPPEADPDIVALEALASHFDGAFTPLPGFERLWELAHPPHLPIMRKDASVLLDYRR 285

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
            +   +K     + ++ +   +E   + +  +  +  R  T  +   +         + A 
Sbjct: 286  RSLWRKVAGKADGDRLADQAEEHYARCRTAYGALMGRIATAIIGSFSNEL----DGVLAD 341

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            YE  K+   VLDF+DL+     +L+   +   +R    +  + IL+DE QDT  +Q E+I
Sbjct: 342  YEAFKRSAAVLDFDDLLYTCRQVLRDFPI---VRNTAGERFSRILVDEFQDTDPLQAEII 398

Query: 197  RSLTEDFFVGKNTHS---SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
              L  D       H+    P  LF VGD KQ+IY F GA+    L  ++  +++      
Sbjct: 399  FLLCSDAADAAAWHTKALRPGQLFVVGDPKQAIYRFRGADLATYLTVRQSIERQFPGN-- 456

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I+++  +FRS   IL  V++ FS                        Q G V L   
Sbjct: 457  ---IVKVSANFRSRDPILRHVNECFS------------------EHLSQQQAGYVALHAT 495

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT-DTIFSNGKKRVIQ 372
              +  ++     + S           S+    AR +A   + +IG  +   ++G+ R + 
Sbjct: 496  RGASDNALPGVAKISVELPP-ETNVASARDEEARVVAEVCARLIGNVELKLNDGRARRLT 554

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              DI +L     D                I         L      +DL+AL R +    
Sbjct: 555  PGDIALLAPVSTDLWRYERALEE----AGIPFASQAGKNLFKRQEAQDLVALVRALADPR 610

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI-----QKFANCGISKFQHVIKY 487
            D L+   +L+ PL   +E ++  I +    +E   +          A       + V+  
Sbjct: 611  DTLALGALLRGPLVGLTERELLDITSDLPPSEDPDQIAGLTILTDPATVHHDTAREVLGI 670

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRNEQNSY 544
            + +L       SP       +   + R    +R  ++    +  +D FL          +
Sbjct: 671  LGDLRRRVNGTSPAMILAEAIERLRVRSIVAARSADQAVRSLANIDGFLERARSYRVRGF 730

Query: 545  SSLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            +    ++  E      + +    A+   + I+TVH++KGLE PVV  ++  S     +  
Sbjct: 731  ARFARDIDEEWSDGSSSAEGMVEADGQSIEIVTVHSSKGLEWPVVIPINRASMPRRSETF 790

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                   SL+   G  I           ++D +   +   + E  RLLYV  TRA + LI
Sbjct: 791  VYRRSDESLHWALGKII--------PPSLADALLTEEAEKRAENLRLLYVACTRAMESLI 842

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            I   S ++++                           +++I + +   +  +   P +  
Sbjct: 843  IPDFSWSNDDS------------------WAKLLSFRSDTIPQLDISGFPRARVSPSSAA 884

Query: 724  --LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
              L+  E   +     +   K+     ++ +   I      +      L +  +      
Sbjct: 885  ENLQSAEIFAEERARLEAAPKVRWITPSEGDPDVITEQLAWEAGDDEPLRARTTVEGGRI 944

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW------PAKEYKNLLLSITRLLENP 835
            RG+++HKL++ + T    +      S   +              + + L  +  + +  P
Sbjct: 945  RGILLHKLMEELVTGELVESSEDAASRAAQLRDQLFSVSPSTTVDAEELAATALKTIRLP 1004

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI-FEYKTHHHVPQEIE 894
             +         +EV +   +     D +I GR D I+ ++    + F++K+         
Sbjct: 1005 ELKP-FRSGLMAEVPIHA-VAAAGADHLIVGRADAIARTEDGDTVAFDWKSDAAPKDTD- 1061

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                 +  QL+ Y   +            ++Y++  ++  +
Sbjct: 1062 --RSAYRQQLAQYLYAIGAR------KGAVVYMTSGRLDWV 1094


>gi|310644241|ref|YP_003949000.1| ATP-dependent DNA helicase pcra [Paenibacillus polymyxa SC2]
 gi|309249192|gb|ADO58759.1| ATP-dependent DNA helicase PcrA [Paenibacillus polymyxa SC2]
          Length = 774

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 114/718 (15%), Positives = 221/718 (30%), Gaps = 133/718 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   + +                +  +   L            
Sbjct: 33  GAGSGKTRVLTHRIAYLIATRKTAPWGILAITFTNKAAREMQDRVSKLIGPQGRDVWVST 92

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110
           F  +    L +            I   +  L                 + K  Q      
Sbjct: 93  FHSMCVRILRRDIERIGFTSNFSILDSTDQLSVIRSCMKDLNIDTKKFEPKAVQSMMSTA 152

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +M++  +      +   +   Y++  K N  LDF+DLI+ T  L K+      
Sbjct: 153 KNELVTPEMYERKIGDYFEGIVAKVYTKYQQRLKNNNSLDFDDLIMATIQLFKE---VPE 209

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ + + L +              L  VGD  QSIY 
Sbjct: 210 VLDFYQKKFQYIHVDEYQDTNRAQYMLCKMLAD----------KHHRLCVVGDSDQSIYR 259

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  +    +           I L  ++RST++IL   ++V       +   
Sbjct: 260 WRGADISNILNFEEDYPE--------ARTILLEQNYRSTSNILNAANEVIGQNTGRKPKK 311

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       D +   + + + +  +              
Sbjct: 312 ---------------------LW------TDKEGGAKIKVYRADSEHDEGY--------F 336

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I   I                    +L R    + ++  +         I      
Sbjct: 337 IASEIHKNIKAGK----------TYSHHAILYRTNAQSRVVEEIL----IKSDIPYQIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKDL+A  R + + +DD+S + ++  P  +  +  + K+     E      
Sbjct: 383 GIKFYDRKEIKDLLAYLRLLSNPDDDISLIRIINVPKRSIGDTTVGKLQAAAAERGVSIF 442

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +      FA    +        I  L  +  + S  +    +L   + R +  +   
Sbjct: 443 RVLQVVDDLGFAGRTRNALVEFYDMIEGLSRMVDYLSVTELTEKMLETTQYRLELQNENT 502

Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKR--AHSANHNEVRIMT 576
            E    ++ +DEFL+ T+  E+     SL   +++L                 + V +MT
Sbjct: 503 LESRSRLENIDEFLSVTMEFEKGTEDKSLVSFLTDLALIADIDSMNDDEEEQSDAVVLMT 562

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VF+V     VF H      +                             
Sbjct: 563 MHSAKGLEFPIVFIVGMEEGVFPHSRAFLDNEELEEERRL-------------------- 602

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                          YVG+TRA +QL +      +   ++        + +     + 
Sbjct: 603 --------------AYVGITRAEEQLFLTCAQMRTLFGRTTANPPSRFLEEIPDELKE 646


>gi|307244600|ref|ZP_07526704.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
           stomatis DSM 17678]
 gi|306491981|gb|EFM64030.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
           stomatis DSM 17678]
          Length = 787

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 112/654 (17%), Positives = 221/654 (33%), Gaps = 129/654 (19%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
           +S  LT      K +   +   +   +   +  ++D+    ++     +  +  +    +
Sbjct: 112 ASDQLTLVKDCLKELNLDDKKFEPKSIISYISSAKDKLQTPKE---FAREAEGDIWLSKI 168

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ + A Y++   +N  LDF+DLI+ T +LL+  +    +      +  +I++DE QDTS
Sbjct: 169 AE-VYAIYQDRLLRNSALDFDDLIVKTVELLQSNED---VLNFYRGKFKYIMVDEYQDTS 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++I+ L +            + +  VGD+ QSIY + GA+ + +L  ++       
Sbjct: 225 RAQYQLIKMLAQ----------GHQNICVVGDDDQSIYGWRGADIRNILEFEKDYDDVF- 273

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +++L  ++RST  IL   + + +     +     S         + GQ   ++
Sbjct: 274 -------VVKLEQNYRSTQPILDTANHLIANNVERKKKRLWSDK-------KEGQPVKIK 319

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L                              +    A  +A  I         +++  + 
Sbjct: 320 LLR----------------------------NEVEEASYVAEEI---------YNHSMET 342

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  VL R       I        N ++I           +   IKDL+A  R I+
Sbjct: 343 GRSFEDYAVLYRANAQARAIEDAL----NRFQIPYSIYGGTKFYERKEIKDLLAYLRIIV 398

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQ 482
           + +DD+S   ++  P        I K+  +               +     +        
Sbjct: 399 NPQDDISVKRVINVPRRGIGLRTIEKLEDRASLMKESVYSVILDVDNNSDISTKAKKSIN 458

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-------------SRFGNEVIDVL 529
             +  I          SP      +L       +               +    + ID L
Sbjct: 459 EFLDLISIFRTFVDAYSPSQLVEKVLDMTGYIHELEEIVAKNQNLQNGKAEDAQDRIDNL 518

Query: 530 DEFLNFTLRNEQNS--YSSLQELISELEQYPPTIKRAHSANHN--EVRIMTVHTAKGLES 585
            EF++  +  E +       + L + L     +   A        +V +MT+H++KGLE 
Sbjct: 519 REFISIAIEYENSDLNNEEEKNLENFLATISLSSDVADEEEEGLSKVSMMTMHSSKGLEF 578

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVF+V     +F                                 ++  I  +  S  E
Sbjct: 579 PVVFIVGMEENIFP--------------------------------IARAISSMSDSDIE 606

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           E  RL YVG+TRA   L +   +  +   K++       + +      ++    
Sbjct: 607 EERRLCYVGITRAMRDLYLTHVATRTLYGKTSVNMKSRFLGELPEETTQILDSP 660


>gi|126661311|ref|ZP_01732380.1| DNA helicase II [Cyanothece sp. CCY0110]
 gi|126617407|gb|EAZ88207.1| DNA helicase II [Cyanothece sp. CCY0110]
          Length = 772

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 108/562 (19%), Positives = 188/562 (33%), Gaps = 99/562 (17%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +++ A   +   +   Y+     N  LDF+DLI+    L ++ +    I      +  HI
Sbjct: 199 ENSYAKGRIIAEVYEEYQNQLAANNALDFDDLILIPVRLFQQNES---ILGYWHSQFKHI 255

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           L+DE QDT+ IQ+++I+ LT +    K+  +   R++F VGD  QSIYSF  A+   +L 
Sbjct: 256 LVDEYQDTNQIQYQLIQLLTTNAEPQKSEWNWQNRSIFVVGDADQSIYSFRMADFTILLN 315

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +        +   + ++++L  ++RST  IL   +K+              T       
Sbjct: 316 FQSDFGDGLPDEDTR-TMVKLEENYRSTETILQAANKLIENNSQRIDKILRPTR------ 368

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                    ++       D   +          +   I  ++ T
Sbjct: 369 ----------------------GEGEEIYCYKAEDERIESD-------FVISKIQELVET 399

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
           +          +   D  +L R    +               I       F   D   IK
Sbjct: 400 NP--------ELNWGDFALLYRVNAQSRPFEDNL----IRNNIPYTIVGGFKFYDRQEIK 447

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQK------ 472
           D +A  R I++  D +S + ++ SP     +  +  +     E E  ++E I        
Sbjct: 448 DSLAYLRLIVNPFDTVSLLRVINSPRRGIGKTSVDSLLKAAQELEIPLWEIISDETSVKT 507

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529
            A             I +L    +  S  + F  ++           +   E     + +
Sbjct: 508 LAGRAAKSVNQFATMIKKLQEQLKDFSATELFDQVMEGSGYVDDLKQKGTEEADNRLENI 567

Query: 530 DEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            E  +   +  E +  +SLQ  ++                  +V +MT+H+AKGLE P+V
Sbjct: 568 YELYSAIAQYQEDSEDTSLQGYLTNASLASDLDN--LDEGQEKVSLMTLHSAKGLEFPIV 625

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FLV        H       +                                    EE  
Sbjct: 626 FLVGLEQGTLPHIRSLNDPLS----------------------------------LEEER 651

Query: 649 RLLYVGMTRASDQLIICKHSNT 670
           RL YVG+TRA +QL I      
Sbjct: 652 RLCYVGITRAQEQLFITHARER 673


>gi|259047692|ref|ZP_05738093.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC
           49175]
 gi|259035883|gb|EEW37138.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC
           49175]
          Length = 773

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 132/813 (16%), Positives = 265/813 (32%), Gaps = 137/813 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L   +V   N             + ++   L            
Sbjct: 31  GAGSGKTRVLTHRMAYILAEEEVQPWNILAITFTNKAASEMKERVSALVGEQAGDMWVST 90

Query: 66  FSLLSSFFLTQKFT---PQKNII---TQEINKKSPDLKEKLKKSQDEFIK---------I 110
           F  +    L +        K+     + +       + +KL    D+F            
Sbjct: 91  FHSMCVRILRRDCERIGLAKSFTIIDSGDQLSAMKRIMQKLNIDSDKFDARGILASISNA 150

Query: 111 RDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++ F   + F  T A     +       YE  K+KN  +DF+DLI+ T  L K+      
Sbjct: 151 KNNFEDAETFAKTHANFMDQITAKCYVEYEAEKRKNMTVDFDDLIMLTVKLFKEHPD--- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     Q+ ++I +DE QDT+  Q+ +++ L + F          + +  VGD  QSIY 
Sbjct: 208 VLAYYQQKFHYIHVDEYQDTNHAQYLLVQLLADKF----------KNICVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +          ++ L  ++RST  IL   ++V    +N +   
Sbjct: 258 WRGADMENILSFEHDYPQ--------AKVVLLEQNYRSTKTILKAANQVIENNQNRKPK- 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW              + ++        +        R 
Sbjct: 309 --------------------ELW-------TENEAGDKITYYCAASGYEES-------RY 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +  TI  M+                 D  VL R    +  +            +      
Sbjct: 335 VMRTIQKMVN---------FDGYDYSDFAVLYRSNAQSRTLEEDL----LKANMPFKMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                + + IKDL+A  R +++  DD SF  ++ +P        I K+    +    ++ 
Sbjct: 382 GQRFYERMEIKDLLAYLRLLVNPTDDFSFRRVVNAPKRGIGGKSIEKLEDFAQMHGFSLL 441

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E   +      +           K I +L  + +F S  D    ++              
Sbjct: 442 EASAETTLNGISGKAGKGLADFAKLISDLTKMQEFVSLTDLIEEVMIKSGYIASLEQAHT 501

Query: 523 NEVI---DVLDEFLNFTLRNEQNSYSS------LQELISELEQYPPTIKRAHSANHNEVR 573
            E     D + EFL+     E+  + S      L + +++L      ++     + +++ 
Sbjct: 502 MEADARIDNMREFLSVAKEFEEKRFDSEAEESALVQFLTDLSLV-TDMENEEETSASQIT 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEDGIFPSARTL----------------------------- 591

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                 ++  +EE  RL YVG+TRA  +L + +  +     K+        + +      
Sbjct: 592 ------QEGDEEEERRLAYVGITRAEKKLFMTRAYSRLLYGKTQHYRESRFMQEIDDKLL 645

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
           + +   +++S     + + + S +   +    R     +  + QK    L     +  + 
Sbjct: 646 QKEGEMISDSYYSSSFYSEKPSYNRGSSATGGRLFDRYRNTNAQKNEGYLHKKSHSSASI 705

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
             +   +            +   ++ + RG ++
Sbjct: 706 QRVEKQTPTSASSDGWTVGMKVSHKKWGRGTVV 738


>gi|290893619|ref|ZP_06556601.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071]
 gi|290556821|gb|EFD90353.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071]
          Length = 1051

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 122/694 (17%), Positives = 251/694 (36%), Gaps = 54/694 (7%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
           I +D+        + +   +  + E   P          L + Q L + + +       +
Sbjct: 226 IKEDIELRVNQAKNYLLNAIDYANENNGPAPYLATLENDLVQIQALSELNWS-SWTHLKT 284

Query: 68  LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
            + +    +  T + K+   +   +++   ++  KK           R+  N     +  
Sbjct: 285 SIENIDFKRIPTLKNKSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNYLSDLEKM 344

Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                    L K   A++ E K++  VLDF DL      +L   D ++ +     ++   
Sbjct: 345 KPDIQTLSELVKKFAANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQDYQKQFKE 404

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +LIDE QDT+++Q  ++R +T       N   +   LF VGD KQSIY F  AEP   + 
Sbjct: 405 VLIDEYQDTNMVQETILRLVT-------NPRETQGNLFMVGDVKQSIYRFRLAEPTLFMT 457

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRH 297
           + +  Q+  +  G     I+L  +FRS  ++L   + +F    +     +  D+   +  
Sbjct: 458 KYQTFQQDGSGNGI---RIDLSQNFRSRKEVLDATNFIFRQLMDKHIAEIDYDTAAELTL 514

Query: 298 RSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
            ++         +L    +   D++   +         S  +     + +R IA  I  M
Sbjct: 515 GANFPETNAMATELLLIDMKTEDTETEDEL--------SPQELQKNQVESRAIAMKIREM 566

Query: 357 IGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
           I       + K    R IQ +DI++L R     P +    +       I    N+     
Sbjct: 567 IDNKFPIYDKKLKQNRPIQYRDIVILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYF 622

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYI 470
           +   +  ++AL + + +   D+    +L+SP+   +E+++ +I   + +    + +  Y 
Sbjct: 623 ETTEVATMIALMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLAYK 682

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
               +    K    ++ ++    ++   +       I       +       G +    L
Sbjct: 683 DITVSETADKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANL 742

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
               +   + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE
Sbjct: 743 RALYDRANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLE 802

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVV +     +        K  +                      +   + +   +   
Sbjct: 803 FPVVIVSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMI 862

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
            E  R+LYV +TRA ++LI+        +   N 
Sbjct: 863 AEEMRVLYVALTRAEEKLILVATVPDFEKTSKNW 896


>gi|160893045|ref|ZP_02073833.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50]
 gi|156865128|gb|EDO58559.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50]
          Length = 781

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 110/602 (18%), Positives = 202/602 (33%), Gaps = 118/602 (19%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
              E    ++R+ +   +    A     T    + + Y +  +K    DF+DLI    +L
Sbjct: 136 FMAEISNAKERYISPDQYAKMNATDFVKTQTATVYSEYMKRLRKFNAFDFDDLIYKVVEL 195

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            +       +         +I++DE QDT+ IQ+ +++ L   +          R L  V
Sbjct: 196 FEHNPD---VLELYQDRFRYIMVDEYQDTNHIQFLMVKQLASKY----------RNLCVV 242

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIY F GA    +L  ++              +++L  ++RS  +IL   + V  
Sbjct: 243 GDDDQSIYKFRGANITNILNFEKEYP--------DAKVVKLEQNYRSCGNILAAANAVIK 294

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             E  +  +                     LW         Q + ++  +    D   + 
Sbjct: 295 HNEGRKDKA---------------------LW-------TDQGDGEKLVFNQSEDEYME- 325

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A R+   I  +               Q KDI +L R    +     +       
Sbjct: 326 ------ADRVVNEIIRLTANG----------AQYKDIALLYRTNAQSR----ILGEKLVM 365

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT- 458
             I           +   IKD+MA  + + +  DD     ++  P     +  + K+   
Sbjct: 366 RGIPHRVYGGQNFYERKEIKDVMAYLKVVNNSTDDTYLRRIINVPKRGIGDATVDKVAAF 425

Query: 459 QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKK 512
                 T+ E +Q           ++K    ++ I     I +        F  IL    
Sbjct: 426 AAANDMTLMEAMQIIEQIPGLQRSVAKISGFVELIDGFREIIEEQEPLSTLFDRILEDTG 485

Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSAN 568
              + I+   +E    ++ +DE  N  ++ E +   ++L + + ++     T K +   +
Sbjct: 486 YEDELIAEHTDESMARLENIDELRNRVVQFETDYEEATLADFLEDIALVSETDKMSD--D 543

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            N V++MT+H +KGLE P VFL     ++F                              
Sbjct: 544 DNMVKLMTIHGSKGLEFPYVFLCGMEERIFPS---------------------------- 575

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
               +  I    +   EE  RL YVG+TRA  +L +    N       N       + + 
Sbjct: 576 ----AMAINSDDEDALEEERRLCYVGITRAMKKLYLSCARNRMLHGSRNCNDISRFIKEI 631

Query: 689 FH 690
             
Sbjct: 632 PP 633


>gi|323463999|gb|ADX76152.1| ATP-dependent DNA helicase PcrA [Staphylococcus pseudintermedius
           ED99]
          Length = 731

 Score =  308 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 117/718 (16%), Positives = 230/718 (32%), Gaps = 128/718 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             + ++ Q L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKERVQALVGEEAEVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK+               E  K+
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKRENIDPKKYEPRIFIGEISKL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    ++        +   +   Y++   +N  LDF+DLI+ T  L ++      
Sbjct: 148 KNDLLTPAKAEAEADDFYSRMVATVYKGYQQQLVRNQALDFDDLIMTTIRLFER---VPD 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ ++  L + F          + L  VGD  QSIY 
Sbjct: 205 VLDFYQNKFQYIHVDEYQDTNTAQYTLVNMLAQKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA    +L  ++               I L  ++RST  IL   ++V       +   
Sbjct: 255 WRGANIHNILSFEKDYPN--------ARTIFLEQNYRSTKTILQAANEVIRHNTERKPKG 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +    ++  +        +          
Sbjct: 307 ---------------------LW-------TANQQGEKIHYYEAMSERDET-------EY 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I                  + KD+ VL R    + ++            I  V   
Sbjct: 332 VVREIFKQQKKGK----------RYKDMAVLYRTNAQSRVLEETF----LKSNIPYVMVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKDL++  R I +  DD+S   ++  P        + KI         T++
Sbjct: 378 GQKFYDRKEIKDLLSYLRLIANSADDISLQRIINVPKRGIGPSSVEKIATYAVDHELTMF 437

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           + + +      +           + +  L+   +F    +    +L     R+       
Sbjct: 438 DALAEVDFIGLSKKVTQAAAEFYQLMSNLMQEQEFLEVSEIVDEVLEKSGYREMLEREQS 497

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ +DEF++  +  E+N+    Q LI+ L           +   + V +MT+H+
Sbjct: 498 IESRSRLENIDEFMSVPVDYEKNTPLEEQSLINFLTDLSLVADVDGANLEDGVTLMTMHS 557

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++     +F H                                   I+  
Sbjct: 558 AKGLEFPIVFIIGMEESIFPHIR--------------------------------AIQSE 585

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                EE  R+ YV +TRA ++L +   ++ +   +         + +       + +
Sbjct: 586 SDHEMEEERRISYVAITRAEEELYLSHATSRTLFGRPQSNERSRFLNEIPEELLDLPE 643


>gi|169335318|ref|ZP_02862511.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258056|gb|EDS72022.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM
           17244]
          Length = 741

 Score =  308 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 113/699 (16%), Positives = 226/699 (32%), Gaps = 139/699 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  +I++  + +                      + ++  ++     +      
Sbjct: 27  GAGSGKTRTIIHRIAYIIENGYAKPWEILALTFTNKAAGEMRERIDSMGIPFTSDIWMGT 86

Query: 66  FSLLSS---------FFLTQKFTPQKNIITQEINK-------------KSPDLKEKLKKS 103
           F  + +            T  F+   +  T+ + K                 +K ++   
Sbjct: 87  FHSICARILRIEGHNLGFTSNFSIYDDDDTKRVVKSILKDLDISDKEFPVEGVKSQISLL 146

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           ++      D    +  F+       +A+ + A Y++    +  +DF+DL++N N L  K 
Sbjct: 147 KNNLETSDDYLEEHDDFEGGYTEARIAQ-IYAEYQKRLLSSNAMDFDDLLLNMNILFAK- 204

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                +  K      +IL+DE QDT+L Q+ ++  L ED           R +   GD+ 
Sbjct: 205 --CPEVLNKYKNRFKYILVDEYQDTNLSQYAIVSKLAED----------HRNICVCGDDD 252

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA  + +L  +   +          ++I L  ++R T +IL   + V    + 
Sbjct: 253 QSIYGWRGASIRNILEFEEDFE--------DAAVIRLEQNYRCTKNILNAANGVIEHNQR 304

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                                    ++  + +    L + S   
Sbjct: 305 RMGKTLF----------------------------TDNDEGEKIKYLNANSDLEESS--- 333

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                I+  I  +          +   I   DI +L R    + ++            I 
Sbjct: 334 ----LISREIFCL---------NEYHGIPYSDIAILYRTNAQSRMLEEGL----MRRNIP 376

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHE 462
                     D + IKD++A  + I++ +DDL+ + ++ +P        + KI      +
Sbjct: 377 YQIVAGTKFYDRMEIKDILAYLKLIVNPQDDLALIRVINTPKRGIGPASVEKIKDYAFMK 436

Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             ++YE I+   +          K  +    I E+  + +     D     +      + 
Sbjct: 437 GTSMYEVIKHIDSSPLFKGAIKEKLMNFRDTIEEIRRLPENNGLMDIVINTIHLSGYEEM 496

Query: 517 FIS---RFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEV 572
                    +  ++ LDE +N     E N    +L+  +                + ++V
Sbjct: 497 LKEGKVENASNRLENLDELVNAAGDFESNEEENTLEAFLENAALVAGVDSYD--EDSSKV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE  +VF+      +F                                  
Sbjct: 555 LLMTLHNAKGLEFNIVFMPGMEENLFP--------------------------------- 581

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                  + S  EE  RL YVG+TRA  QL +    +  
Sbjct: 582 -TYRAVNEDSEMEEERRLCYVGITRARKQLYMSSAESRR 619


>gi|116493117|ref|YP_804852.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC
           25745]
 gi|116103267|gb|ABJ68410.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC
           25745]
          Length = 757

 Score =  308 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 114/700 (16%), Positives = 222/700 (31%), Gaps = 145/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++  +L      +     
Sbjct: 30  GAGSGKTRVLTHRVAYLIEEKGVNPWNVLAITFTNKAAREMRERVTSLLGDEAAEIWVST 89

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKI 110
           F  L                 F     + Q+ ++   +   + D K+   +         
Sbjct: 90  FHALCVRILRRNIDQLGYNRAFSIADPSEQRTLVKHILADLNYDPKKFDPRSVLGTISNA 149

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T   ++   ++    +   +   Y+   + N  LDF+DLI+ T +L +K   +  
Sbjct: 150 KNDLKTPLTYRENASTPYEQVVADIYEEYQRRLENNQALDFDDLIMKTIELFQKNPET-- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q++++  L + F          R +  VGD  QSIY 
Sbjct: 208 -LSFYQNKFHYIHVDEYQDTNQAQYQLVTMLAKHF----------RNICVVGDSDQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + ++  +                + L  ++RST +IL   + V       +   
Sbjct: 257 WRGADMQNIMNFESDYP--------DSKTVMLEQNYRSTQNILNAANDVIENNVERKPK- 307

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               QLW             ++ S+      + +       A  
Sbjct: 308 --------------------QLW-------TDNDEGEKISYYRGQTGIDE-------AHF 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   I             +   D  +L R    + +I            I  +   
Sbjct: 334 IVQKIREQIKE---------HNLNYGDFAILYRTNAQSRVIEDTF----VKSNIPYLMVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY- 467
                D   I+D+++    I +++D +SF  ++  P        I K+     E      
Sbjct: 381 GHKFYDRKEIRDVLSYLTLIANEDDSMSFERVINEPKRGIGSTSIAKLQAFADENNWSLL 440

Query: 468 ------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                 +     ++   +  +   K I  L    +F +  +    +L     R       
Sbjct: 441 KAARSVQIANGISSRARNAIEDFAKMIDALRKSGEFLNITELTEAVLEQTGYRAALEKSR 500

Query: 522 GNE---VIDVLDEFLNFTLRNEQNSYSS-------------LQELISELEQYPPTIKRAH 565
             E    ++ +DEFL  T + +  + +              L + +++L           
Sbjct: 501 TMESEARLENIDEFLTVTKQFDDKNEAEGNEIADENGDNIQLVDFLADLALVSDQDN--V 558

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               + V +MT+H AKGLE P+VFLV     +F                           
Sbjct: 559 EEEPSGVTLMTLHAAKGLEFPIVFLVGMEDGIFPLS------------------------ 594

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                        + +   EE  RL YVG+TRA  +L I 
Sbjct: 595 ----------RAMMDQEQLEEERRLAYVGITRARQKLYIT 624


>gi|319947280|ref|ZP_08021513.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC
           700641]
 gi|319746522|gb|EFV98782.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC
           700641]
          Length = 767

 Score =  308 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 99/592 (16%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 172 QIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPD---VLTYYQQKFQYIHVDEYQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V     N +  +                   
Sbjct: 277 ------DAKVVLLEENYRSTKTILQAANDVIKNNRNRRPKN------------------- 311

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 312 --LW-------TQNADGEEIVYYRANDEQDE-------AVFVAKTIEELSREA------- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + +D  VL R    +  I            I               I+D++A    
Sbjct: 349 --GYKHRDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVIAYLNL 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI    + +  ++ +                  
Sbjct: 403 IANLSDNISFERIINEPKRGIGPGTVDKIRDFAQMQGTSLLDASANIMLSGIKGKAAQAI 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  +    +L          ++   E    I+ + EFL+ T  
Sbjct: 463 WDFANLILDLREKLDQMTITELVEEVLDKTGYMTALTNQGNLESQARIENIQEFLSVTKN 522

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    +++   +L   +++L     T     +   +EV +MT+H AKGLE PVVFL
Sbjct: 523 FDENGDSVEDESGVDTLSRFLNDLALIADTD--DGAQETSEVTLMTLHAAKGLEFPVVFL 580

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 581 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 606

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     +++       + +   +    + +    
Sbjct: 607 AYVGITRAEKVLFLTNANSRLLFGRTSYNRPTRFINEISSDLLTYQGLARPA 658


>gi|312867706|ref|ZP_07727912.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405]
 gi|311096769|gb|EFQ55007.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405]
          Length = 761

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 99/591 (16%), Positives = 191/591 (32%), Gaps = 122/591 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V     + +  +                   
Sbjct: 271 ------DAKVVLLEENYRSTKTILQAANDVIKNNRHRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------AVFVAKTIEELSREA------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + +D  VL R    +  I            I               I+D++A    
Sbjct: 343 --GYKHRDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI    + +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVDKIRDFAQMQESSLLDASANIMLSGIKGKAAQAI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  +    +L          ++   E    I+ + EFL+ T  
Sbjct: 457 WDFANLILDLRERLDQLTITELVEEVLDKTGYMTALTNQGNLESQARIENIQEFLSVTKN 516

Query: 539 NEQNSY--------SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            ++N           +L   +++L     T     +   +EV +MT+H AKGLE PVVFL
Sbjct: 517 FDENGETVEDESGVETLSRFLNDLALIADTD--DGAQETSEVTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            YVG+TRA   L +   ++     +++       + +   +    + +   
Sbjct: 601 AYVGITRAEKVLFLTNANSRLLFGRTSYNRPTRFINEISSDLLTYQGLARP 651


>gi|225174502|ref|ZP_03728501.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
 gi|225170287|gb|EEG79082.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
          Length = 1069

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 147/852 (17%), Positives = 271/852 (31%), Gaps = 89/852 (10%)

Query: 94   PDLKEKLKKSQDEFIKIRDRFNTYKMFK-STLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
             +  ++++   D F +   +    + ++      L       AH++  +++   ++F+DL
Sbjct: 270  KETAKQIQAFFDHFRESDIQPTLRQWWEYRYPHLLEFLLPAVAHFQTVRQRENQVNFQDL 329

Query: 153  IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT--- 209
            ++ T  LLK     + +R        H+L+DE QDT  IQ E++  LT       +    
Sbjct: 330  LMRTAALLKNN---SEVRGYFQNRYTHLLVDEFQDTDPIQAEIMMFLTGCDLTETDWTKI 386

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
               P  LF VGD KQSIY F  A+     R K + +K          ++ L  +FRS  +
Sbjct: 387  SPKPGALFVVGDPKQSIYRFRRADIDTYNRVKDLIKK------ANGEVLHLTANFRSLTE 440

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            I+  V+ VF            +   +  +  R                         +  
Sbjct: 441  IIDWVNPVFDDLLTQSVAPYQADA-VPMQPVRKNHP--------------DNTGGIFKIE 485

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIF-------SNGKKRVIQAKDILVLVRK 382
                    QE+  S  A RIA  I   +  +            G        D L+LVR 
Sbjct: 486  IPGITYHKQETIVSEDAARIAAWIRTCLDGNVTLTRTAEEEQAGLSATPSPNDFLILVRY 545

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
            +    L           Y I    +    +     +++L  L + +   ++ +  V  L+
Sbjct: 546  KDYMSLYARALEE----YNIPFSLSGASDIAASRELQELHLLLQALADPDNPVPLVATLR 601

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
               F  S++D++++         +           +  F  + + + +     +   P  
Sbjct: 602  GLFFGVSDEDLYRLKKANGRFCLLSPIPDD---PTVESFIPIWEKLQQYRAWTRELPPSS 658

Query: 503  FFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNEQNS----YSSLQELISELEQY 557
                I+              G      + + L      EQN      +++  +   LE  
Sbjct: 659  AIENIISDLGLIPYALAGSMGKGRTGYILQLLELIRSREQNGQTTFPATVDFISELLEAG 718

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                    +     VRIM +H AKGLE+PVVFL + G  V        +H+  +     G
Sbjct: 719  MEEELDVEAGIAPAVRIMNLHKAKGLEAPVVFLANPGKTV---TREPNLHVSRTSGTPKG 775

Query: 618  IPIWIPQSKSRNNIVSD------LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                  +    + I +                Q E  RLLYV  TRA + LII  +   +
Sbjct: 776  YLQISKRENYASEIFAQPTNWEVHQAEETLYQQAEEARLLYVAATRAKNILIISTYPAKA 835

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
            ++                         +   SI   +    +        T +  E    
Sbjct: 836  DKSP------------------WHPLEEFMESIPTLDIPQVQLPAKEEPQTQITPETLQA 877

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
                 Q+   ++ +P                D              +  + G +IH  L+
Sbjct: 878  VNQQIQENIARVITPTYTRCT--------VTDLTKDAQAPERRHTGRGMSWGNVIHNALE 929

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851
             +        +  I     +  +     E + +L  +  + E P      S    SE   
Sbjct: 930  ALVKYENIDLEALIPQLLQQEGRA--EDEKEEVLTLLQEITETPFWQRVQSA---SEKHT 984

Query: 852  SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKI 910
                   + D  ++G ID      +   + +YKT         + +   +  QL  Y K 
Sbjct: 985  EIPFGIYENDHYLTGTIDLAFREAEGWVLVDYKTDTVRDDVHRQELVNYYTPQLKEYAKR 1044

Query: 911  LKDSYPNKSLVC 922
             ++    + +  
Sbjct: 1045 WEEM-TGERVKA 1055


>gi|269123730|ref|YP_003306307.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
 gi|268315056|gb|ACZ01430.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
          Length = 735

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 122/684 (17%), Positives = 230/684 (33%), Gaps = 137/684 (20%)

Query: 2   KNRFGL-----SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
           +N   L     +  E  E +   +       +S  + +    + T +  I          
Sbjct: 52  RNILALTFTNKAAKEMKERVETLVGDNNEILISTFHSFAVRLLRTYSERI--------GY 103

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI-RDRFN 115
           +    I +           QK   +K + +Q ++KK  +   ++        ++  +  N
Sbjct: 104 TNNFNIYDNND--------QKSIIKKILKSQGLDKKYKE--SQIISKISRLKELGLNYTN 153

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
             +     L      K +   Y+E  +K+  +DF DL++N   LL       ++  KI  
Sbjct: 154 LGQELDMNLPFNREFKEIFREYQEKLEKSNAMDFSDLLVNAKALLDDE----YVLDKIQN 209

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
              +ILIDE QDT+ IQ+++++ + + +          + +  VGDE QSIY+F GA  +
Sbjct: 210 RYIYILIDEYQDTNEIQYQIVKKIAKKY----------KNICVVGDEDQSIYAFRGANIR 259

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +L  ++             + I+L  ++RST  IL   + V    ++++G         
Sbjct: 260 NILNFEKDYPN--------ANTIKLEQNYRSTQTILDAANSVIRNNKSSKGKK------- 304

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                         LW             ++    +  +   +       A  I+  I+ 
Sbjct: 305 --------------LW-------SDNNKGEKIGIYTAINVEDE-------ATFISDKINE 336

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           +           ++  + KD  +L R    +  I           KI           D 
Sbjct: 337 L---------KIRKDKKYKDFTILYRTNAQSRAIEESL----IQNKIPYKIYGGLRFFDR 383

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA 474
             IKDL++    I + +DDLSF  ++  P  +     I  +         ++++ I +  
Sbjct: 384 KEIKDLISYLLLINNPKDDLSFERVINFPKRSIGPKTIEVLTHIATKNQTSLFDAILQVE 443

Query: 475 NCGI----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529
           N        K       I++ I   +  +  +    ++                  I+ +
Sbjct: 444 NEISSSAIKKLLSFRDLINKYIIAKEDMTTSEILKDLMDDIDYNSALDSYDNKENRIENI 503

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVV 588
            E +N     E+ +      L   LE               N V++MT+H +KGLE   V
Sbjct: 504 QELINSIATIEEET--GFLSLPEYLENVALNSPSDNLVEEENFVKLMTIHASKGLEFNTV 561

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FLV     +F ++    M                                  +   EE  
Sbjct: 562 FLVGVEEGLFPNEDSNFM----------------------------------EDELEEER 587

Query: 649 RLLYVGMTRASDQLIICKHSNTSN 672
           R+ YV +TRA ++L I        
Sbjct: 588 RIFYVAITRAEEELYITHSLERKT 611


>gi|301301162|ref|ZP_07207319.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851291|gb|EFK79018.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 1248

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 118/630 (18%), Positives = 220/630 (34%), Gaps = 46/630 (7%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           L      QK  I + +   S  + E L        +   +  T K  +       + K  
Sbjct: 294 LDDDQKKQKERINKTLRDGSKKIIEDLSVKYFALPEDEIKELTQKSKQIVETLSEVVKEF 353

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            + + + K++  VLDF DL   T  +L         ++ ++  +   I++DE QDT+ +Q
Sbjct: 354 GSEFSKEKRRRHVLDFSDLEHLTLQILNTDTPDGRRVKERLKNKFKEIMVDEYQDTNQLQ 413

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ ++          H +P  +F VGD KQSIY F  A+P   L++ +       N  
Sbjct: 414 ETILTTIA---------HKNPGNMFMVGDVKQSIYGFRLADPGLFLKKYQSFATDDNND- 463

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSR--IGQVGTV 308
                I L  +FRS  ++    + +FS   + +   ++ D    + + +           
Sbjct: 464 ---ERIILAENFRSMENVTAFTNLIFSQLMDEKVGEMAYDEDARLVYGAKYYLEETPVKA 520

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           ++          + + +  +     D+  Q           A  I  ++       + K+
Sbjct: 521 EILVYESEDSSQESDDEPVNEDFSIDNKAQGQIV-----MTAKRIKELVENGEKIYDKKQ 575

Query: 369 ---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              R I+ +DI +L   RK+      +         + +   D         +K +M+  
Sbjct: 576 GAIRPIEYRDIAILAPTRKN----NLILTEEFKRLGVPIFVPDAQNYFQTTELKIMMSFL 631

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-----------EYIQKFA 474
           + I +   D+  V +L+SP+    E+++  +       +              E    FA
Sbjct: 632 QIIDNPYQDIPLVAVLRSPIVGLKENELAYLRINDKTGDYFQAVESFYDNFEVEKASAFA 691

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFL 533
                K    +K + E  ++AQ          I               G +    L    
Sbjct: 692 QSLYEKIAIFLKQLTEFRNMAQQNELASLIWKIYEETGFLDYVGGMPGGLQRQANLHALY 751

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVF 589
                 E+ S+  L + +  + +     K    A    + + V +MT+H +KGLE P+VF
Sbjct: 752 ERAAEYEEMSFKGLFQFVRFINKMQTKNKDLSEATTQVSDDAVTVMTIHGSKGLEFPIVF 811

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+D   +       K   +               + K+   +     +   K    E  R
Sbjct: 812 LLDATHKFNVGDLNKPYLLNADDGIGISYLDPDTRVKTDTLMKVIAGEQALKKLAAEQMR 871

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
           LLYV +TRA  QL I       +E  S   
Sbjct: 872 LLYVALTRAEQQLFIVGSYKDKSEALSKWE 901



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 94/303 (31%), Gaps = 21/303 (6%)

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN---SINKD 707
             Y+G      ++    + +   E  +        +       E  + +++ +    I   
Sbjct: 949  AYIGELPVKFEVKFYSNQDLRGENITLDENSESWLKQQLKKIEEQEPLEINDKQYRIIDK 1008

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
               +   +    + T  +    +K+  D+          I      P  +N         
Sbjct: 1009 ILQSKYPNESLTKTTAYQAVSDLKRAFDDPDNNMMQSLEIDWQDQAPQGINRYVQGELKL 1068

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLL 825
                +          G   H LLQ +    E   +  +       ++  + P    +  L
Sbjct: 1069 PKFMTTKVKVSPAQVGTATHLLLQKLPLDEEVTLEELMQLLSQLVEDKLITPEVAKEINL 1128

Query: 826  LSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP----------KKDIIISGRIDQISI 873
              I     + +  T +        E+  +  I             ++ I++ G ID +  
Sbjct: 1129 DQIKNFYASDLGKTVLENKDKVKRELPFAMIIPAGRLFSNVDNDVEQPILVHGIIDGLIE 1188

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKV 932
                + IF+YKT HH     + +   +  QL++Y   ++    NK +   +IY +   K 
Sbjct: 1189 LDDEVIIFDYKTDHHT--SEDKLIENYRGQLNLYAMAVESML-NKKVSQKIIYSLDLGKS 1245

Query: 933  FII 935
             ++
Sbjct: 1246 IVL 1248


>gi|329911425|ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327545902|gb|EGF31006.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1090

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 156/921 (16%), Positives = 311/921 (33%), Gaps = 118/921 (12%)

Query: 35   VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI----- 89
            ++  +  G     ++A  ++ A       + F  L   F+  K   + N   +       
Sbjct: 255  MAWLLGQGAKRNQERAVAIETALTAGASLDGFQQLFLQFMDDKGKVRGNDHRRGKLLAAN 314

Query: 90   -----NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
                 +  +   + +        ++++ R     +     A  T+     A Y+  K + 
Sbjct: 315  EINLGDNSADSFETEFGTLAAALMQLQRRSTETTVLALNAALFTVGAAYLAVYQAVKAEQ 374

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             V DF DL      LL   + +A+++ ++D    HIL+DE QDT+ +QW ++R+    + 
Sbjct: 375  RVFDFADLEWQAYRLLGNEEHAAYLQSRLDSRYRHILLDEFQDTNPLQWSIVRA----WL 430

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  S+  ++F VGD KQSIY F  AEP+  L  + +         Q  +I++   + 
Sbjct: 431  AAYGDDSAAPSVFIVGDPKQSIYRFRRAEPRVFLAARAMLAA------QGAAILQTNQTR 484

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            R+   ++ +++  F                   +++   + G +     VV    +   P
Sbjct: 485  RNAPVLIELLNDSFGPNPIFSA-----------QTTLSARPGMIWRLPLVVQSASTVVAP 533

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                      +  +E   +            +       +     + +  D+++LV+KR 
Sbjct: 534  AGLVLRDPLVTPLEEDEDARRLDEGRAVAVAIRRARLELAACNGTLPRWSDVMLLVKKRA 593

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                     R       I    + R  L + L I DL+AL  F+++  D+ +   +LKSP
Sbjct: 594  HLGAYETALRE----AGIPFASDKRGGLLESLEIADLIALLTFLITPGDNRALAHVLKSP 649

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            +   ++ D+ ++   +H+  + ++ +    +            +   + IA     HD  
Sbjct: 650  IIGAADTDLIRL--AQHDGGSWWQRLLALEDV----LPDATMQLQHWLMIAPGLPVHDLL 703

Query: 505  TLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
              IL   +   ++ +        +VI  L+ F    L  +   Y SL + I  L      
Sbjct: 704  DRILHEGQLVARYAASVPALLRGQVIGNLEAFTALALNLDAGRYPSLPKFIDALRALQNA 763

Query: 561  IKRAHSANH------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                           + VRI+T+H+AKGLE+ +V L+D      +      +   P    
Sbjct: 764  AHNDAPDEADIDAALDAVRILTIHSAKGLEADIVVLLDANHSEPARDDAGILCEWPQDAA 823

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             P       +   R      L     +   +E   LLYV MTRA   LI+   +   N +
Sbjct: 824  APTHFSAFGRVAERGAARDALFADEDRFRVQEDWNLLYVAMTRARQCLIVSGVAGKRNAQ 883

Query: 675  --KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
               +   +WY  + ++       +     +SI  D           P     E  E+  +
Sbjct: 884  ADGTVDGSWYARLLEAPEMLLEAESFGDADSIESDFHWPVFNPAVIPPAAVPEVAESTPE 943

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
            + +                                               G+ +H LL+ 
Sbjct: 944  IDE-----------------------------------------------GIALHGLLER 956

Query: 793  I----FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
            +      +      + I  +               +      +L  P ++          
Sbjct: 957  LTQHRDGVLPVPDASVIARWLDC-----SPACAGVVRAQALTILAAPDLSQFFDPHQI-- 1009

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            V    +I       ++  R D++      ++I +YK      + +      + AQL+ Y 
Sbjct: 1010 VFAHNEIELLHDGELL--RFDRLVQLPDALWILDYK-----RRLLASERADYAAQLARYR 1062

Query: 909  KILKDSYPNKSLVCLLIYVSE 929
            +     Y  +++   LI V  
Sbjct: 1063 RAALAVYAGQTIRTALILVDG 1083


>gi|225568813|ref|ZP_03777838.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM
           15053]
 gi|225162312|gb|EEG74931.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM
           15053]
          Length = 743

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 107/616 (17%), Positives = 195/616 (31%), Gaps = 117/616 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE+  + N  LDF+DL++ T  L +     A I     +   +I++DE QDT+ 
Sbjct: 170 AQVYEEYEKQLRANNALDFDDLLVKTVQLFQT---QADILDYYQERFRYIMVDEYQDTNT 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+E+IR L   +          R L  VGD+ QSIY F GA  K +L  +++ +     
Sbjct: 227 VQFELIRILASKY----------RNLCVVGDDDQSIYKFRGANIKNILNFEQVYE----- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST++IL   + V       +  +                     L
Sbjct: 272 ---DAKVIKLEQNYRSTSNILNAANAVIRNNYGRKDKT---------------------L 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W              +  +  +        SA   A  I   I   + +           
Sbjct: 308 W-------TDNGEGDKIHFRQF-------DSAYDEAEYIVGDIREQVDSG---------G 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  +L R    + +             I               IKDL++  + + +
Sbjct: 345 CTYNDNAILYRTNAQSRMFEEKF----VTANIPYKVVGGVNFYARREIKDLLSYLKTVDN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKFQHV 484
            +DDL+   ++  P        I ++           YE +           G S+ +  
Sbjct: 401 GQDDLAVRRIVNVPKRGIGLTSINRVQEYASSRGIGFYEALCAVDLIPNIGRGASRLESF 460

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
           +  I      A+  S  D    I+      +   +    E     + +DE ++     E+
Sbjct: 461 VALIEHFKTDAREMSISDLMQEIIDETGYIESLQAEDSIEAETRIENIDELMSKIAAYEE 520

Query: 542 -----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                N   +L   + E+         +   + + V +MT+H+AKGLE P V+L      
Sbjct: 521 ACEESNEPVTLSGFLEEVALVADID--SLDESSDYVVLMTLHSAKGLEFPRVYLAGLEDG 578

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F                                     I        EE  RL YVG+T
Sbjct: 579 IFPSYMT--------------------------------ITADDPEEVEEERRLCYVGIT 606

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA ++L +          ++        + +   +      +         +    +   
Sbjct: 607 RAKEELTLTCARRRMIRGETQYNKMSRFLKEIPMDLLATGAVFEKEEEPPRQGAYAQARQ 666

Query: 717 HHPENTPLEREETIKQ 732
                        ++Q
Sbjct: 667 TFRTKAFGGAARPVRQ 682


>gi|315652267|ref|ZP_07905259.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986]
 gi|315485390|gb|EFU75780.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986]
          Length = 733

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 105/548 (19%), Positives = 182/548 (33%), Gaps = 120/548 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+   KKN  LDF+DLI  + +L +       +         +I++DE QDT+
Sbjct: 169 AARIYEIYQSTLKKNNALDFDDLICRSVELFEN---CPDVLDYYQNRFRYIMVDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++I  L++ +          + +  VGD+ QSIY F GA  + +L  +   +    
Sbjct: 226 TAQFKLIYLLSQKY----------KNICVVGDDDQSIYKFRGANIENILSFEDKFEN--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST +IL   + V       +  S                     
Sbjct: 273 -----VEVIKLEQNYRSTENILNAANAVIKNNRGRKNKS--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW               +  T     L Q ++A   A  I   I                
Sbjct: 307 LWT--------------DGVTGANIELRQFANADAEADFIIKDIKAKAND---------- 342

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               KD  VL R    + L+      L     +               IKD++A  + I 
Sbjct: 343 --NFKDFAVLYRTNAQSRLLEERCVTL----GVPYQLVGGVNFYQRKEIKDVLAYLKTIA 396

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN----CGISKFQHV 484
           +  DD++ + ++  P        I K+         ++Y+ +    N        K +  
Sbjct: 397 NGSDDIALLRIINLPKRGIGATTIAKVADYANENGISLYDAMTVCENIGIGKAADKIKKF 456

Query: 485 IKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNE 540
           I  I E     A+  +  +    +L      +         G    + ++E +N ++  E
Sbjct: 457 IAMIEEFRDKVAKKANIANMIEELLDKTGYIESLYDEGEIEGESRKENIEELVNKSVDYE 516

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                 L   + E+       +     N + + +MT+H AKGLE   V+L      +F  
Sbjct: 517 DGE---LSLFLEEVSLVADIDRMD--ENADRITLMTLHGAKGLEFDTVYLAGMEEGLFPS 571

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              +  + +   EE  RL YVG+TRA  
Sbjct: 572 ----------------------------------AMSSISREDLEEERRLAYVGITRAKK 597

Query: 661 QLIICKHS 668
            LI+    
Sbjct: 598 NLILTSAK 605


>gi|293365526|ref|ZP_06612235.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
 gi|291315894|gb|EFE56338.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
          Length = 763

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 101/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNPDGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRGFANMQDMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMILDLREKLDQLTITELVEAVLEKTGYIDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVF+
Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLIEYQGLARPA 652


>gi|67924839|ref|ZP_00518236.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501]
 gi|67853326|gb|EAM48688.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501]
          Length = 772

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 114/562 (20%), Positives = 193/562 (34%), Gaps = 99/562 (17%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +++ A   +   +   Y+     N  LDF+DLI+    L ++ +    I      +  HI
Sbjct: 199 ENSYAKGRVIAEVYNEYQTQLAANNALDFDDLILVPVRLFQQNES---ILGYWHSQFKHI 255

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           L+DE QDT+ IQ+E+I+ LT +    K+  +   R++F VGD  QSIYSF  A+   +L 
Sbjct: 256 LVDEYQDTNRIQYELIQLLTTNAEPRKSEWNWENRSIFVVGDADQSIYSFRMADFTILLN 315

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +        +   + ++++L  ++RST  IL   +++              T       
Sbjct: 316 FQSDFGDGLPDEDTR-TMVKLEENYRSTETILQAANQLIENNSQRIDKILRPTR------ 368

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                    ++       D   +       A  +   I  M+ T
Sbjct: 369 ----------------------GEGEEIYCYKAEDERIE-------ADFVMGKIQEMVET 399

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
           +          +   D  +L R    +               I       F   D   IK
Sbjct: 400 NP--------ELNWGDFALLYRVNAQSRPFEDNF----IRNNIPYNIVGGFKFYDRQEIK 447

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQK------ 472
           D +A  R I++  D +S + ++ SP     +  I  +     E E  ++E ++       
Sbjct: 448 DSIAYLRLIVNPFDTVSLLRVINSPRRGIGKTSIDSLLKASQELEIPLWEIVRDETSVKT 507

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529
            A             I EL    +  S  + F  I+          ++   E     + +
Sbjct: 508 LAGRAAKSVNKFASMIKELQGKLKELSGTEIFDQIMELSGYVDDLKTKGTEEADNRLENI 567

Query: 530 DEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            E  +   +  E+N  +SLQ  ++                  +V +MT+H+AKGLE P+V
Sbjct: 568 YELYSAIAQYQEENEDTSLQGYLTNASLASDLDN--LDEGQEKVSLMTLHSAKGLEFPIV 625

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FLV      F H       +                                    EE  
Sbjct: 626 FLVGLEQGTFPHVRSLNDPLS----------------------------------LEEER 651

Query: 649 RLLYVGMTRASDQLIICKHSNT 670
           RL YVG+TRA +QL I      
Sbjct: 652 RLCYVGITRAQEQLFISHARER 673


>gi|116630137|ref|YP_815309.1| superfamily I DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
 gi|116095719|gb|ABJ60871.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri ATCC 33323]
          Length = 757

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 130/760 (17%), Positives = 231/760 (30%), Gaps = 135/760 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 40  GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 99

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110
           F  L    L +            I   +  L    +  +D                    
Sbjct: 100 FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 159

Query: 111 RDRFNTYKM--FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T K    ++T     +   + A Y+   K++ ++DF+DLI+ T  L KK      
Sbjct: 160 KNDLLTPKDFKAQATSPFEKVTAQVYAEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 216

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
             +    +  +IL+DE QDT+  Q+++  +L   +          + +  VGD  QSIY 
Sbjct: 217 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 266

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   Q        + + I+L  ++RST  IL   + V    +N +   
Sbjct: 267 WRGANMENILNFEHDYQDD------EVNTIKLEQNYRSTGHILDAANSVIKNNQNRKPKK 320

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         + +  + ++            A  +  +
Sbjct: 321 ---------------------LW-------TDKGDGDKINYYRA---QSGNDEALFIVSK 349

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I                    KD  VL R    +  +            I      
Sbjct: 350 INEEIKEHHRD-------------YKDFAVLYRTNAQSRNVEEAL----VKSNIPYRIVG 392

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKD++A  + + +  D +SF  ++  P        + K     ++ +   E
Sbjct: 393 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 452

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              K                     + + I  ++  S       +L     ++   +   
Sbjct: 453 ETFKNLSLAPITGRPAKTLATFGTALKDAIEYSKTHSVTGLTEKLLADFGYKEALENEHT 512

Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E     + L+EFL  T R       E    ++L + +SE+               N+V 
Sbjct: 513 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 570

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 571 LMTLHAAKGLEFPVVFLVGMEEGLFPLSRATGDPS------------------------- 605

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                      EE  RL YVG+TRA  +L I    + +   +         + +    D 
Sbjct: 606 ---------ELEEERRLAYVGITRAEKKLYITNAFSRTMYGRPQNNQPSRFIDEIEDKDL 656

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
                  +NS     +             P  R ET K+ 
Sbjct: 657 EFVNQVQSNSAMSIPFAKSSERATSQVYRPKTRIETAKKA 696


>gi|311029280|ref|ZP_07707370.1| ATP-dependent DNA helicase PcrA [Bacillus sp. m3-13]
          Length = 767

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 126/775 (16%), Positives = 243/775 (31%), Gaps = 135/775 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV+  N             + ++ + L   +        
Sbjct: 32  GAGSGKTKVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVEKLLGPAAEDIWIST 91

Query: 66  FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106
           F  +    L                  T + +  KNI+  + I+ K  + +  L      
Sbjct: 92  FHSMCVRILRRDIDRIGMNRNFTILDTTDQLSVIKNILKDRNIDPKKFEPRTILGTISSA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++ +     K  +           +   Y++  KKN  LDF+DLI+ T  L K+    
Sbjct: 152 KNELMNPEQYAK--QPLGPYEQQVAEIYTDYQKRLKKNQALDFDDLIMTTIHLFKR---V 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     ++  +I +DE QDT+  Q+ ++  L +            + L  VGD  QSI
Sbjct: 207 PEVLEYYQRKFQYIHVDEYQDTNRAQYTLVNLLADRL----------KNLCVVGDSDQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++              ++ L  ++RST  IL   ++V       + 
Sbjct: 257 YRWRGADIANILSFEKDYPN--------AEVVLLEQNYRSTKRILEAANRVIDNNIGRKK 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW       ++    +   + +         S    A
Sbjct: 309 KN---------------------LW------TENDEGQKIIHYQA--------DSEKSEA 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +   +  ++  +              D  +L R    + ++  +         I+   
Sbjct: 334 QFVVGKMRELMRQNPSR--------TLGDFAILYRTNAQSRVMEEML----LMSNINYTI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I + +DD+S   ++  P        + KI         +
Sbjct: 382 VGGTKFYDRKEIKDILAYLRLIANPDDDISLQRIVNVPKRGIGATTVDKIANYATQHDIS 441

Query: 466 VYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +Y  + +           S+ +     I   + + ++ S  +    +L     R+   + 
Sbjct: 442 IYTALAEVDLIGVSGRATSQLKEFRSLIEGYVQMQEYISVTELVEEVLEKSGYREMLKAD 501

Query: 521 FGNE---VIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSAN--HNEVRI 574
              E    ++ +DEFL+ T   E+     SL   +++L       K           V +
Sbjct: 502 KTIESQSRLENIDEFLSVTKNFEEKYDDKSLVAFLTDLALVADIDKLDEEDPAQQEGVIL 561

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE PVVFL+     VF H                                  
Sbjct: 562 MTLHAAKGLEFPVVFLIGMEEGVFPHSRSLFEEAEMEEE--------------------- 600

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                         RL YVG+TRA +QL I      +   ++N       + +       
Sbjct: 601 -------------RRLAYVGITRAEEQLFITNAQMRTLFGRTNINPPSRFIKEIPEELLE 647

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
            ++ K   S                 +T      T +             +   +
Sbjct: 648 SEENKEAASRPTPFGGRGSSFGGGSASTFGGSSSTGRARAASPASQTARRTTAPS 702


>gi|303231497|ref|ZP_07318227.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513840|gb|EFL55852.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 729

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 202/615 (32%), Gaps = 117/615 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +  +YE   +KN  LDF+DL++    LL+     A +  K  +   +++IDE QDT+
Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSN---AAVLEKYSKRFKYVMIDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +   L+  +          + +  VGD  QSIY++ GA+ + +L  ++       
Sbjct: 226 HAQYLLAYLLSSHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 + I+L  ++RST  IL   + V    E     +                     
Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIDNNEGRPEKN--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       D     + + +T+  +           A  I  TI                
Sbjct: 307 LW------TDKVEGAKIQHFTAQSEHEE--------AAFIGDTIVKKHD---------IH 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D+ +L R    + ++            +           D   IKD++A  R + 
Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482
           +  DDLS + ++  P  +     + K+    R    +++  + +             K +
Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVSKLQDYARENGTSLFMTLTQLHLVDTIKGKTKEKLE 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
                I  L+      S  D    IL       Q       +     + + E L+     
Sbjct: 460 EFGILIFTLVAEMDDKSVLDILEAILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519

Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +  + +  +++ + ++             +   V +MT+H AKGLE P+VFL      +F
Sbjct: 520 QDTNPTGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                      +     EE  RL YVG+TRA
Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717
             +L I   +  +   +++       + +      + ++  +      K     +     
Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPAELVDSLRAKRRIPDDIKPTVPRHMSVAS 663

Query: 718 HPENTPLEREETIKQ 732
            P   P+ R E I  
Sbjct: 664 RPVTKPIIRNEVIAD 678


>gi|15826976|ref|NP_301239.1| putative ATP-dependent DNA helicase [Mycobacterium leprae TN]
 gi|221229454|ref|YP_002502870.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
 gi|13632801|sp|Q9CD72|PCRA_MYCLE RecName: Full=ATP-dependent DNA helicase pcrA
 gi|13092523|emb|CAC29661.1| putative ATP-dependent DNA helicase [Mycobacterium leprae]
 gi|219932561|emb|CAR70246.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
          Length = 778

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 110/656 (16%), Positives = 194/656 (29%), Gaps = 127/656 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
              +   ++E I          +   T         +   Y+   +    LDF+DLI  T
Sbjct: 156 ANAISNLKNELIDAESAV--ANLSSDTDDLARTVATVYGEYQRRLRTANALDFDDLIGET 213

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             +L+       I     +   H+L+DE QDT+  Q+ ++R L             P  L
Sbjct: 214 VGILQ---AFPQIAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGHGARNSPDDMPPGEL 270

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD  QSIY+F G+    +   +R             + I L  ++RST +IL+  + 
Sbjct: 271 CVVGDADQSIYAFRGSTISNIEDFERDYP--------DTTTILLEQNYRSTQNILSAANS 322

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V +     +                        LW             +        +  
Sbjct: 323 VIARNFGRRDKR---------------------LW-------TDAGKGELIVGYVSDNEH 354

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +       A+ IA  I  ++G            I   D+ VL R    +  +  +    
Sbjct: 355 DE-------AKFIADEIDALVGGGE---------ITYDDVAVLYRANNLSRSLEEVF--- 395

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                I       F   +   I+DL+A  R + +  D +S   +L +P     +     +
Sbjct: 396 -IPTGIPYKVVGGFCFYESKEIRDLIAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEACV 454

Query: 457 CTQRHETETVYEYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
                 T T +    +              +      +  + +L          +    +
Sbjct: 455 SVYAENTGTSFADALQAVAEGKVPMLNTRSVKAIAGFVALLDDLRCRV-DDDLGELVESV 513

Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-----------------EQNSYSSL 547
           L      ++  S    +    +D L+E ++F                     E       
Sbjct: 514 LERSGYLRELESSTDPQELARLDNLNELVSFAHEFSTEQANAAALAKSLHTPEDEDVPDT 573

Query: 548 QELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             L + LE+             N   V +MT+H AKGLE PVVF+      +  H     
Sbjct: 574 GALAAFLEKVSLMSDTDQIPENNSGVVTLMTLHAAKGLEFPVVFVTGWEDGMLPHMRTLG 633

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                                   E  RL YVG+TRA  +L + 
Sbjct: 634 DPT----------------------------------ELSEERRLAYVGITRARQRLYLS 659

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    S+  +         + +        ++  LT+S +     A  +    P +
Sbjct: 660 RAITRSSWGQPILNPESRFLREIPPELIDWRRSILTDSYSTPASGASRFGRVRPSS 715


>gi|302386124|ref|YP_003821946.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
 gi|302196752|gb|ADL04323.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
          Length = 762

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 118/726 (16%), Positives = 225/726 (30%), Gaps = 139/726 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    ++  N             + ++   L            
Sbjct: 27  GAGSGKTRVLTHRIAYLIEEKSINPWNILAITFTNKAAGEMRERVDRLVGFGADSIWVST 86

Query: 66  FS---------LLSSFFLTQKFTPQKNIITQ-------EINKKSPDLKEKLKKSQDEFIK 109
           F           + S   T  FT   +   +       +     P + +  +        
Sbjct: 87  FHSSCVRILRRHIESLGYTTNFTIYDSDDQKTLMRHVLKGLDMDPKIYKD-RAMLGFIST 145

Query: 110 IRDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            ++   T + F+              +   Y+   +KN  LDF+DLI+    L +     
Sbjct: 146 AKNELVTAEEFEQNAGGDFRQKKVAQIYKEYQNQLRKNNALDFDDLIMKAVQLFQNNPE- 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             I     +   +I++DE QDT+  Q+++I  L   +          R L  VGD+ QSI
Sbjct: 205 --ILDYYQERFKYIMVDEYQDTNTAQFKLISLLAGKY----------RNLCVVGDDDQSI 252

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F GA  + +L  ++              +I+L  ++RS+  IL   ++V       + 
Sbjct: 253 YKFRGANIENILNFEKAYP--------GAKVIKLEQNYRSSQSILNAANEVIRHNRGRKD 304

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW        +        +  + ++  +       A
Sbjct: 305 KT---------------------LW-------TANEEGPLVQFKQFENASEE-------A 329

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I   I N                + +D  VL R    + LI          + +    
Sbjct: 330 DAIVRDIRN-------------SSSEYQDCAVLYRTNAQSRLIEEK----CLQHNVPYRM 372

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465
                      IKD+++  + I +  DDLS + ++  P        + ++          
Sbjct: 373 VGGVNFYQRKEIKDILSYLKTIANGRDDLSSLRIINVPKRGIGATSLGRVQAFASEHGFA 432

Query: 466 VYEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFI 518
           VY+   +            K     + I +  +       S HD    IL     +++  
Sbjct: 433 VYDAFCRAKAVPGLGKTAEKILKFTELIEDFRNRLDEETYSIHDLIEDILDETGYQKELE 492

Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRI 574
           +    E    ++ ++E +N  +  E      +L E + E+       +   S   N V +
Sbjct: 493 TEGEIEYQTRLENIEELINKAVSFEGEHEHPNLNEFLEEVALVADIDRMDDSE--NRVTL 550

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H+AKGLE P V+L      +F                                    
Sbjct: 551 MTLHSAKGLEFPRVYLSGMEDGLFPSMMS------------------------------- 579

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            I    K   EE  RL YVG+TRA + L++          ++        + +       
Sbjct: 580 -ISSDDKEAVEEERRLCYVGITRARNFLMMTAARQRMVNGETRYSKISRFIEEIPGELLD 638

Query: 695 VKKIKL 700
             K++ 
Sbjct: 639 SNKLEP 644


>gi|299144359|ref|ZP_07037439.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518844|gb|EFI42583.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 730

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 107/596 (17%), Positives = 198/596 (33%), Gaps = 117/596 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YE+  K N  LDF+D++I T +L +  +    I+     +  +I +DE QDT+
Sbjct: 168 VGEIYNLYEKKLKDNNALDFDDILIKTVELFENNED---IKNYYQDKFKYIFVDEYQDTN 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           +IQ+ +I+ L           ++   L  VGD  QSIY + GA+   +L  ++       
Sbjct: 225 MIQYRLIKLLC----------NASPNLTVVGDNDQSIYKWRGADISNILNFEKDF----- 269

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
              +   +I L  ++RST+ IL V + V     N +  +                     
Sbjct: 270 ---KDAKVILLEQNYRSTSKILNVANSVIKNNGNRKDKN--------------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW             +   +  +  S  +E + +                 T       +
Sbjct: 306 LW-------TDNGVGEDVVYRVFRHSQEEEQAVT-----------------TKMLQLNYK 341

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D+ +L R    +              KI           D   +KD++A  + I 
Sbjct: 342 GHAFSDMAILYRTNAQSRGFEEAL----IREKIPYKIVGGLRFYDRKEVKDIIAYLKVIQ 397

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-ETVY------EYIQKFANCGISKFQ 482
           +  DD++   ++  P        I  +     E   +++      E  ++         +
Sbjct: 398 NTADDVAINRIINVPKRGIGAQSIEDMSKYADENFISLFSVIDGIEENEQLNLRSKKNVK 457

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539
                I+ L   AQ  S       ++          +    E     D + E ++  +  
Sbjct: 458 EFANLINLLRLNAQELSVSKLIEKVIYESGYISDLEAENTVEARSRIDNIKELISTAVDF 517

Query: 540 EQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E+N+   +L+E +S +       K +  A+   V++MT+H+AKGLE  +VFLV     +F
Sbjct: 518 ERNNPLGNLEEFLSGISLLSDVDKTSPDAS--AVKLMTIHSAKGLEFKIVFLVGMEEGLF 575

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                             RL YVG+TRA
Sbjct: 576 PTSRALDDEEDIEEE----------------------------------RRLCYVGVTRA 601

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
              L I      +   K++       + +      ++   K T    K+     ++
Sbjct: 602 EKYLYISSSQTRTLYGKTSPCLESRFIKEMEDTITKIIPEKETYESKKNLVEVSDF 657


>gi|306825147|ref|ZP_07458489.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432583|gb|EFM35557.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 763

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 101/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNADGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQDMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMILDLREQLDQLTITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVF+
Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDTGSQETSE--VTLMTLHAAKGLEFPVVFI 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|304440549|ref|ZP_07400436.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371027|gb|EFM24646.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 729

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 104/570 (18%), Positives = 196/570 (34%), Gaps = 116/570 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + K +   YE+  KKN  LDF+DLI+ + +LL+  +    ++        ++ +DE QD
Sbjct: 164 RITKEIYYEYEKELKKNNALDFDDLILKSVELLQNHEE---VKNYYRDRFEYVFVDEYQD 220

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E++R +  +             L  VGD  QSIY++ GA+   +L  ++  +  
Sbjct: 221 TNKSQYEMVRLICRE----------NPNLTVVGDNDQSIYAWRGADISNILNFEKDFKN- 269

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST +IL   + + +             T  +       Q G 
Sbjct: 270 -------AKVVLLEQNYRSTKNILDAANSLIANNP----------TKYKKNLWTSSQGGE 312

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
              ++   S  D +                         + +   I ++           
Sbjct: 313 TVKYKIYSSSFDEE-------------------------KCVIEKIDDL----------- 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            R    +D+ +L R    +               I+          D   +KD+++  +F
Sbjct: 337 HRDYPFEDMAILYRTNAQSRGFEEHL----MRAGIAYRVVGGLKFYDRKEVKDIISYMQF 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQKFANCGISK-----F 481
           I++ +D++S   ++ +P        +  I        +T+YE I+      ++       
Sbjct: 393 IVNTDDEVSLARIINTPRRGIGGQTVESIRKAAIDSGKTMYEIIKNLDEYNLNIRASKNI 452

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
           +  +  I  L       + H+F   +       +        E    I+ ++E +N +  
Sbjct: 453 KKFVDIIENLREKKDSITIHEFIEEVCRESGYIEDLEKENTVESRSRIENIEELINSSYE 512

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E+N       L   L           S +   V +MTVH AKGLE  VVFLV    +VF
Sbjct: 513 YEKNYEE--PNLEEYLSSLSLLSDVDKSEDTGGVSLMTVHGAKGLEFKVVFLVGMEERVF 570

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                    +    EE  RL YV +TRA
Sbjct: 571 PSG----------------------------------RSMDEDDEVEEERRLAYVAITRA 596

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            +QL +    + ++  +         + + 
Sbjct: 597 KEQLFVSSCKSRNSYGQPTYNKPSRFIEEM 626


>gi|329121051|ref|ZP_08249682.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM
           19965]
 gi|327471213|gb|EGF16667.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM
           19965]
          Length = 735

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 101/546 (18%), Positives = 180/546 (32%), Gaps = 116/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++  K+N  LDF+DL+  T ++L +      IR K  +   +ILIDE QDT+  
Sbjct: 172 DVYELYDKYMKQNNALDFDDLLKLTTEMLYE----KNIREKWQKRFKYILIDEYQDTNHA 227

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ + + +  +             + AVGD  QSIYS+ GA+ K ++  K    +     
Sbjct: 228 QYLMAKYIAGED----------CNICAVGDVDQSIYSWRGADLKNIIDFKSDYPQ----- 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST  IL   + V     +    +                     LW
Sbjct: 273 ---AEIIKLEQNYRSTKTILNAANSVIKNNIDRPSKN---------------------LW 308

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                 D   +       A  I  TI                  
Sbjct: 309 -------TQNDKGDLIQRYKASDEHAE-------ADFIINTIKEEHDK---------NNC 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  +L R    + ++            I           D   I+D++A  + I + 
Sbjct: 346 SYGNFAILYRMNAQSRVLEESL----VKKGIGYTMVGGTRFYDRAEIRDILAYLKVISNY 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE-----YIQKFANCGISKFQHVI 485
           +DD+S + ++  P        + K +   + +  +++E          +     K Q   
Sbjct: 402 KDDISLLRIINVPKRGIGSVTVQKLLNFAKDKNISIFETLIMLEESSLSESVQKKIQKFS 461

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN 542
             I +L++ +  C   +   ++L   +                 + + E L+        
Sbjct: 462 ALIFKLVNESIQCDVFELIDMVLKETEYIAALHESNDPKSQSREENIGELLSVAKDFINE 521

Query: 543 SYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                L + + ++               ++V +MTVH+AKGLE P VFL      +F   
Sbjct: 522 KPDGTLSDFLEKVALVNDVDNYETVN--DKVTLMTVHSAKGLEFPFVFLAGMDEGIFPG- 578

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                            +   + +S  EE  RL YV +TRA ++
Sbjct: 579 ---------------------------------VRSLMDESALEEERRLCYVAITRAKEK 605

Query: 662 LIICKH 667
           L I   
Sbjct: 606 LFITSS 611


>gi|313891747|ref|ZP_07825352.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus
           UPII 345-E]
 gi|313119741|gb|EFR42928.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus
           UPII 345-E]
          Length = 735

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 101/546 (18%), Positives = 180/546 (32%), Gaps = 116/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++  K+N  LDF+DL+  T ++L +      IR K  +   +ILIDE QDT+  
Sbjct: 172 DVYELYDKYMKQNNALDFDDLLKLTTEMLYE----KNIREKWQKRFKYILIDEYQDTNHA 227

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ + + +  +             + AVGD  QSIYS+ GA+ K ++  K    +     
Sbjct: 228 QYLMAKYIAGED----------CNICAVGDVDQSIYSWRGADLKNIIDFKSDYPQ----- 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST  IL   + V     +    +                     LW
Sbjct: 273 ---AEIIKLEQNYRSTKTILNAANSVIKNNIDRPSKN---------------------LW 308

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                 D   +       A  I  TI                  
Sbjct: 309 -------TQNDKGDLIQRYKASDEHAE-------ADFIINTIKEEHDK---------NNC 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  +L R    + ++            I           D   I+D++A  + I + 
Sbjct: 346 SYGNFAILYRMNAQSRVLEESL----VKKGIGYTMVGGTRFYDRAEIRDILAYLKVISNY 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE-----YIQKFANCGISKFQHVI 485
           +DD+S + ++  P        + K +   + +  +++E          +     K Q   
Sbjct: 402 KDDISLLRIINVPKRGIGSVTVQKLLNFAKDKNISIFETLIMLEESSLSESVQKKIQKFS 461

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN 542
             I +L++ +  C   +   ++L   +                 + + E L+        
Sbjct: 462 ALIFKLVNESIQCDVFELIDMVLKETEYIAALHESNDPKSQSREENIGELLSVAKDFINE 521

Query: 543 SYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                L + + ++               ++V +MTVH+AKGLE P VFL      +F   
Sbjct: 522 KPDGTLSDFLEKVALVNDVDNYETVN--DKVTLMTVHSAKGLEFPFVFLAGMDEGIFPG- 578

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                            +   + +S  EE  RL YV +TRA ++
Sbjct: 579 ---------------------------------VRSLMDESALEEERRLCYVAITRAKEK 605

Query: 662 LIICKH 667
           L I   
Sbjct: 606 LFITSS 611


>gi|266624561|ref|ZP_06117496.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
 gi|288863577|gb|EFC95875.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
          Length = 805

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 123/726 (16%), Positives = 228/726 (31%), Gaps = 139/726 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   +            
Sbjct: 27  GAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEMRERVDKIVGFGAESIWVST 86

Query: 66  FS---------LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
           F           + S   T  FT   +   + + ++     E L     +   +    +T
Sbjct: 87  FHSSCVRILRRHIESLGYTTNFTIYDSDDQRTLMRQVLKTLE-LDPKLYKDRAMLSLIST 145

Query: 117 YKMFKSTLASLTL----------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            K    T A   L          A  +   Y+   KKN  LDF+DLI+ T +L +     
Sbjct: 146 AKNELVTAAEFELNAGGDFRQKKAAQIYKEYQGQLKKNNALDFDDLIMKTVELFQNNPE- 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     +   +I++DE QDT+  Q++++  L   +          R L  VGD+ QSI
Sbjct: 205 --VLDYYQERFKYIMVDEYQDTNTAQFKLVSLLAGKY----------RNLCVVGDDDQSI 252

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F GA    +L  ++             ++I+L  ++RS+ +IL   ++V       + 
Sbjct: 253 YKFRGANIGNILNFEKSYP--------GAAVIKLEQNYRSSQNILNAANEVIRHNRGRKS 304

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                                        WT+  +    +      A
Sbjct: 305 KTL---------------------------------------WTANEEGPLVQYKQFETA 325

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              A  I   I                +D  VL R    + LI            +    
Sbjct: 326 AEEADAIVRDIQNS---------GCGYQDCAVLYRTNAQSRLIEEK----CLQRNVPYRM 372

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465
                      IKD++A  + I +  DDLS + ++  P        + K+         +
Sbjct: 373 VGGVNFYQRKEIKDILAYLKTIDNGRDDLSALRIINVPKRGIGGTSVGKVQAFASEHDFS 432

Query: 466 VYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFI 518
           +Y+   +            K       I +     ++   S  +    +L     +++  
Sbjct: 433 MYDAFCRAQAVPGLGKAADKILKFTALIEDFRERIRYEDYSIRELIEDVLDESGYQKELE 492

Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRI 574
           +    E    ++ ++E +N  +  E++     L E + E+       +   S   N V +
Sbjct: 493 AEGEIEYQTRLENIEELINKAVSFERDHDEGTLSEFLEEVALVADVDRMDDSE--NRVTL 550

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H+AKGLE P V+L      +F                                    
Sbjct: 551 MTLHSAKGLEFPRVYLSGMEDGLFPSMMS------------------------------- 579

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            I    K   EE  RL YVG+TRA D L++          ++        V +   +   
Sbjct: 580 -ISSDDKEEIEEERRLCYVGITRAQDFLMLTGAKQRMINGETRYSKTSRFVDEIPADLLD 638

Query: 695 VKKIKL 700
             K++ 
Sbjct: 639 CDKLEP 644


>gi|331004225|ref|ZP_08327704.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411498|gb|EGG90909.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 735

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 99/565 (17%), Positives = 175/565 (30%), Gaps = 120/565 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L   Y+ A KKN  LDF+DLI  + +L +K      +         +I++DE QDT+
Sbjct: 169 LARLYELYQSALKKNNALDFDDLICRSVELFEK---CPEVLDYYQNRFRYIMVDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +I  L + +          + +  VGD+ QSIY F GA  + +L  +   +    
Sbjct: 226 TAQFRLIYLLAQKY----------KNICVVGDDDQSIYKFRGANIENILSFEERFEN--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST +IL   + V       +     +                ++
Sbjct: 273 -----VKVIKLEQNYRSTGNILDAANAVIKNNRGRKDKRLWTEG---------ESGENIE 318

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L +   +  +                          A  I   I N              
Sbjct: 319 LRQFQTANEE--------------------------ADNIIKDIKNRARQ---------- 342

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  VL R    + L+      L     +               IKD++A  + I 
Sbjct: 343 --NFRDFAVLYRTNAQSRLLEERCVTL----GVPYQLIGGVNFYQRKEIKDVLAYLKTIA 396

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYI----QKFANCGISKFQHV 484
           +  DD++ + ++  P        I K +        ++Y+ +             K +  
Sbjct: 397 NGNDDIALLRIINVPKRGIGATTIAKVVDYANANDISLYDAMSISENAGVGKASEKIKSF 456

Query: 485 IKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNE 540
           I  I           +       +L      +         G    + ++E +N +   E
Sbjct: 457 IDMIEYFREKIDKKANISSIIDELLDKTGYIESLYDEGEIEGESRKENIEELINKSTEYE 516

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                 L   + E+       +     N + + +MT+H AKGLE   V+L      +F  
Sbjct: 517 DGE---LSLFLEEVSLVADIDRMD--ENADRITLMTLHGAKGLEFDTVYLAGMEEGLFPS 571

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              +    K   EE  RL YVG+TRA  
Sbjct: 572 ----------------------------------AMSANSKEDLEEERRLAYVGITRAKK 597

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMV 685
            LI+          ++        +
Sbjct: 598 NLILTSAKQRMINGETRYSLMSRFI 622


>gi|312127653|ref|YP_003992527.1| uvrd/rep helicase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777672|gb|ADQ07158.1| UvrD/REP helicase [Caldicellulosiruptor hydrothermalis 108]
          Length = 714

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 105/550 (19%), Positives = 180/550 (32%), Gaps = 114/550 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +  K+    DF+DL+  T  L +       I  K   +  +IL+DE QDT+  
Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNHA 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  I  L++            R +  VGD+ QSIYSF GA  K +L  +++        
Sbjct: 226 QFYFIYLLSQ----------KHRNVCVVGDDDQSIYSFRGANIKNILEFEKVF------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RST  IL+  ++V       +                        LW
Sbjct: 269 -SDAKVIKLEKNYRSTKTILSAANEVIKHNYYRKSKR---------------------LW 306

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++    S FD + +       A  +A ++ N+I +           +
Sbjct: 307 -------TDNLEGEKIFLYSAFDEVNE-------AEFVASSVKNLIESG----------L 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VL R    +             Y +           +   IKD++A  R I + 
Sbjct: 343 SPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE------TVYEYIQKFANCGISKFQHVI 485
            DDLS   ++  P        + KI     E         +      F      K    I
Sbjct: 399 HDDLSLFRIINVPRRGIGNSTLEKIKVLSKEYGVSAYTVLLERAKIDFDKKTYEKLNSFI 458

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             I +L   A+  S      L+L      +  +S    E       +++ ++     E+ 
Sbjct: 459 SLIEDLKAEAENLSVSQTIKLVLDKTGYLESLLSSKSEEEFQRAKNIEQLISAAAIFEEE 518

Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               ++Q  ++ +                +V +MTVH AKGLE  VVFL      +F   
Sbjct: 519 NEEPTVQNFLNSITLSSEEEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFPLV 575

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             ++        ++                                    YV +TRA   
Sbjct: 576 RAEEPVEAEKELEEERRL-------------------------------CYVAITRAKKL 604

Query: 662 LIICKHSNTS 671
           L++   +N  
Sbjct: 605 LVLTYANNRR 614


>gi|310657865|ref|YP_003935586.1| ATP-dependent DNA helicase [Clostridium sticklandii DSM 519]
 gi|308824643|emb|CBH20681.1| ATP-dependent DNA helicase [Clostridium sticklandii]
          Length = 720

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 104/549 (18%), Positives = 191/549 (34%), Gaps = 115/549 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+   K N  LDF+DLI  T +LLK  +   ++R    ++  ++++DE QDT+  Q
Sbjct: 171 VYDLYQRKLKSNNALDFDDLIFKTVELLKTDE---FVRDFYQRKFQYVMVDEYQDTNHAQ 227

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +I  L+E            + L  VGD+ QSIY + GA+   +L  ++  +       
Sbjct: 228 YVLINLLSEM----------HKNLCVVGDDDQSIYGWRGADIANILDFEKDYKDAF---- 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +++L  ++RST  IL   + V       +                        LW 
Sbjct: 274 ----VVKLEQNYRSTEVILDGANSVIKRNLGRKNKK---------------------LW- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       ++      +D   +       A  IA  I      +            
Sbjct: 308 ------TQLKEGEKIKLHKAYDEKDE-------ANFIAREIKKRQEEEDR---------N 345

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +D  +L R    +  +            IS          D   IKD+MA  R + +  
Sbjct: 346 LRDFALLYRTNAQSRALEEAL----IKQSISYKIFGSLKFYDRKEIKDIMAYLRLVQNPL 401

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQ-----KFANCGISKFQHVIK 486
           DDL+   ++  P        + K+  +     E+++  +        +    +     + 
Sbjct: 402 DDLALKRIINVPKRGIGAKTLEKLEERALVTGESLFGLLHDLSGFDLSTKVKTTLNKFVM 461

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQN 542
            I+  + + +     +F   ++   K   +  +   +E     + ++EF +  +   + +
Sbjct: 462 MINSFMDMKEILPLTEFVQKVIDNTKYVDELKAEETDEANGRIENIEEFKSVVMEFMQNS 521

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              +L+E +S +               + V +MT+H+AKGLE PVVFL      +F    
Sbjct: 522 EEKTLEEFLSSVSLVSDLDSID--EEDDFVTLMTLHSAKGLEFPVVFLAGVEEGIFPIS- 578

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                               L ++  EE  RL YVGMTRA   L
Sbjct: 579 ---------------------------------RAMLDENQLEEERRLCYVGMTRAKQIL 605

Query: 663 IICKHSNTS 671
            I   +  +
Sbjct: 606 YITYANERT 614


>gi|309800339|ref|ZP_07694508.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302]
 gi|308116036|gb|EFO53543.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302]
          Length = 623

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 27  QIVAKCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 83

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 84  TNHAQYQLVKLLASRF----------QNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 132

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V    +N +  +                   
Sbjct: 133 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 166

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI  +         G+
Sbjct: 167 --LW-------TQNADGEQIVYYRANDEQDE-------AVFVAKTIDEL---------GR 201

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 202 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 257

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 258 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 317

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +        S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 318 WDFANMILDWREQLDQLSITELVETVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 377

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 378 FDDNPDNQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 435

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 436 IGMEENVFPLS----------------------------------RAAEDMDELEEERRL 461

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 462 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLTYQGLARPA 513


>gi|303228942|ref|ZP_07315752.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516356|gb|EFL58288.1| ATP-dependent DNA helicase PcrA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 729

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 107/615 (17%), Positives = 202/615 (32%), Gaps = 117/615 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +  +YE   +KN  LDF+DL++    LL+     A +  K  +   +++IDE QDT+
Sbjct: 169 VADVYEYYERELRKNNALDFDDLLLVAVKLLQSN---AAVLDKYSKRFKYVMIDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +   L+  +          + +  VGD  QSIY++ GA+ + +L  ++       
Sbjct: 226 HAQYLLAYLLSSHW----------KNIAVVGDADQSIYAWRGADIQNILDFEKDYPN--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 + I+L  ++RST  IL   + V    E     +                     
Sbjct: 273 -----CTSIKLEQNYRSTKIILDAANAVIDHNEGRPEKN--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       D     + + +T+  +           A  I  TI                
Sbjct: 307 LW------TDKVEGAKIQHFTAQSEHEE--------AAFIGDTIVKKHD---------IH 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D+ +L R    + ++            +           D   IKD++A  R + 
Sbjct: 344 GVPYGDMAILYRTNAQSRVLEEAL----IKRALPYTMVGGTKFYDRKEIKDVLAYLRVLY 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQ 482
           +  DDLS + ++  P  +     + K+    R    +++  + +             K +
Sbjct: 400 NPFDDLSLLRIINVPKRSIGATTVSKLQDYARENGTSLFMTLTQLHLVDTIKGKTKEKLE 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
                I  L+      S  D    IL       Q       +     + + E L+     
Sbjct: 460 EFGILIFTLVAEMDDKSVLDILEAILDRTGYLAQLEESTDPQDQARAENIGELLSVAKDF 519

Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +  + +  +++ + ++             +   V +MT+H AKGLE P+VFL      +F
Sbjct: 520 QDTNPTGTVEDFLEQVALVNDVDSFEQEESK--VTLMTLHAAKGLEFPIVFLGGLEEGLF 577

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                      +     EE  RL YVG+TRA
Sbjct: 578 PHSRTL----------------------------------MNPEEIEEERRLAYVGITRA 603

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717
             +L I   +  +   +++       + +      + ++  +      K     +     
Sbjct: 604 EKELYISNATTRTVFGRTSSYLPSRFIDEIPAELVDGLRAKRRIPDDIKPTVPRHMSVAS 663

Query: 718 HPENTPLEREETIKQ 732
            P   P+ R E I  
Sbjct: 664 RPVTKPIIRNEVIAD 678


>gi|312793467|ref|YP_004026390.1| uvrd/rep helicase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180607|gb|ADQ40777.1| UvrD/REP helicase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 714

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/550 (19%), Positives = 180/550 (32%), Gaps = 114/550 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +  K+    DF+DL+  T  L +       I  K   +  +IL+DE QDT+  
Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNHA 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  I  L++            R +  VGD+ QSIYSF GA  K +L  +++        
Sbjct: 226 QFYFIYLLSQ----------KHRNVCVVGDDDQSIYSFRGANIKNILEFEKVF------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RST  IL+  ++V       +                        LW
Sbjct: 269 -SDAKVIKLEKNYRSTKTILSAANEVIKHNYYRKSKR---------------------LW 306

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++    S FD + +       A  +A ++ N+I +            
Sbjct: 307 -------TDNTEGEKIFLYSAFDEVNE-------AEFVASSVKNLIESG----------F 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VL R    +             Y +           +   IKD++A  R I + 
Sbjct: 343 SPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISKFQHVI 485
            DDLS   ++  P        I KI     E      T  +      F      K    I
Sbjct: 399 HDDLSLFRIINVPRRGIGNSTIEKIKALSEEYNVSAYTVLLERAKFDFDKKTYEKLNSFI 458

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             I +L   A+  S      L+L      +  +S    E       +++ ++     E+ 
Sbjct: 459 SLIEDLKAEAEDLSVSSAIKLVLDKTGYLESLLSSKSEEEFQRAKNIEQLISAAAIFEEE 518

Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +LQ  ++ +                +V +MTVH AKGLE  VVFL      +F   
Sbjct: 519 NEEPTLQNFLNSITLSSEEEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFPLV 575

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             ++        ++                                    YV +TRA   
Sbjct: 576 RAEEPVEAEKELEEERRL-------------------------------CYVAITRAKKL 604

Query: 662 LIICKHSNTS 671
           L++   +N  
Sbjct: 605 LVLTYANNRR 614


>gi|331000444|ref|ZP_08324119.1| putative DNA helicase II [Parasutterella excrementihominis YIT
           11859]
 gi|329571776|gb|EGG53456.1| putative DNA helicase II [Parasutterella excrementihominis YIT
           11859]
          Length = 781

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 106/596 (17%), Positives = 194/596 (32%), Gaps = 114/596 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + A YE   ++    DF +L++   +LL + ++   IR+   +    IL+DE QDT+++
Sbjct: 169 QIYAMYEAVLQREGACDFAELLLRAYELLSRNEM---IRHHYQERFRFILVDEFQDTNVL 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E ++ L      G    + P  +FAVGD+ QSIY+F GA    ++   +  +      
Sbjct: 226 QYEWLKLLA-----GLGEKNPPNAVFAVGDDDQSIYAFRGANVGNMMSFVQEFR------ 274

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RS  +IL   + + S      G +                     LW
Sbjct: 275 --IGEPIRLEQNYRSQGNILDAANALISNNSERMGKN---------------------LW 311

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    + N     +                AR +  TI   I             +
Sbjct: 312 TDAGKGEKIRANRSDNDFD--------------EARFVCSTIQEYIDKG----------V 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +DI +L R    + L             I  +        D   IK+ MA  R   + 
Sbjct: 348 SPEDIAILYRSNAQSRLFETEL----TRRGIPFMVYGGLRFFDRAEIKNAMAYMRLAENP 403

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD +F+ ++  P        I  +         +++E +Q       +KF    + I  
Sbjct: 404 SDDSAFLRVVNVPARGIGAKSIENLVDFATTNGISLFESMQYIRGAAANKFAAFKEIIDT 463

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN---------- 539
           L           F    +     R  + +   G+E I+ L E  +               
Sbjct: 464 LRVAKDEMPLPAFVDFTVEKSGLRNMYELDPNGSERIENLQELTSAAQGFIKEEAIDTEN 523

Query: 540 -EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            +  +  +L  L   +        +       + V++MTVH +KGLE  +VF+      +
Sbjct: 524 SDGTAVENLSALAGFVSHASLEAGENQAQVGQDAVQLMTVHASKGLEFDIVFITGLEEDM 583

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H                                        K   +E  RL+YV +TR
Sbjct: 584 FPH----------------------------------FRSKNDKKALQEERRLMYVAITR 609

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMV-YDSFHNDERVKKIKLTNSINKDEWIAY 712
           A  +L +        + +S        +        + + +    +    ++  ++
Sbjct: 610 ARKELYLTLAEERMLQGRSFSSYPSSFLTEIPGETLKWLSRNPFESRYEAEDEDSW 665


>gi|258514071|ref|YP_003190293.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777776|gb|ACV61670.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM
           771]
          Length = 737

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 107/559 (19%), Positives = 183/559 (32%), Gaps = 116/559 (20%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            ++       A  +   Y++  K    +DF+DL+     L K+      +  +   +  +
Sbjct: 168 READNILTQKAAGIYKLYQKKLKTYNAVDFDDLLFLVVRLFKEHP---NVLERYQHKFRY 224

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           IL+DE QDT+ +Q+ +++ L +            R L  VGD  Q IY + GA+ + +L 
Sbjct: 225 ILVDEYQDTNYVQYLLVKMLAQ----------KSRNLCVVGDPDQGIYGWRGADIQNILS 274

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +R   +          ++ L  ++RST +IL   + + S  +  +              
Sbjct: 275 FERDYPE--------ACVVTLEQNYRSTQNILDAANHIISYNQGRKEKR----------- 315

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW                      D   +       AR +   I ++   
Sbjct: 316 ----------LW-------TDAGKGSPIIVCKSRDEFAE-------ARHVVEQIKHLH-- 349

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      +   +  VL R    + ++  +       Y +           +   IK
Sbjct: 350 -------LVEGVSYSECAVLYRTHAQSRVLEEIM----LRYGLPYNIIGGLRFYERKEIK 398

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-------TVYEYIQK 472
           D++A  R I++  D++S   ++  P     +  + KI     E          + E I  
Sbjct: 399 DVIAYLRVIVNPADEVSLSRIINVPRRGIGDVSLTKIFAFAAEAGIPAGLAMEMAEQIPG 458

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529
                  +   +   +       +F    D    IL     RQ+       E     + L
Sbjct: 459 LNGKARKQAALLGSLLQVWRRQQEFLPVTDLTVDILERTGYRQELEYEGTVEARTRLENL 518

Query: 530 DEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           +EFL+ T   +  +    L E +SEL           +     V +MT+HTAKGLE P V
Sbjct: 519 EEFLSVTRLYDLETVEGTLGEFLSELSLVTDAD--RDNGEAERVNMMTLHTAKGLEFPFV 576

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FLV     +F H                                            EE  
Sbjct: 577 FLVAMEEGIFPHNRALS----------------------------------DAGELEEER 602

Query: 649 RLLYVGMTRASDQLIICKH 667
           RL YVGMTRA  +L +   
Sbjct: 603 RLAYVGMTRARQKLYLSYS 621


>gi|251799681|ref|YP_003014412.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2]
 gi|247547307|gb|ACT04326.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2]
          Length = 785

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 116/718 (16%), Positives = 224/718 (31%), Gaps = 136/718 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  +             +  +   L   +        
Sbjct: 34  GAGSGKTRVLTHRIAYLIEKKRVAPWSILAITFTNKAAREMQARVAALIGPTGQDIWVST 93

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110
           F  +    L +            I   +  L                 + K  Q E    
Sbjct: 94  FHSMCVRILRRDIDRIGFTSNFSILDSADQLSVIRNCMKELNIDVKKFEPKAVQAEISGA 153

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + ++         +   +   Y++  K N  LDF+DLI+ T  L K+      
Sbjct: 154 KNELITPERYEQKTGDYFTDIVAKVFKMYQKRLKSNNSLDFDDLIMTTIQLFKE---MPE 210

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ + R L +              +  VGD  QSIY 
Sbjct: 211 VLEFYQNKFRYIHVDEYQDTNRAQYMLCRMLAD----------KHHNICVVGDSDQSIYR 260

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  +    +           I L  ++RS+A+IL   + V  +    +   
Sbjct: 261 WRGADITNILNFEDDYPE--------ARTIMLEQNYRSSANILEAANAVIKLNTGRKPKK 312

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         Q      +         +          
Sbjct: 313 ---------------------LW-------TDQGEGDMITLYQADSEHDEGY-------F 337

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +  TIS  + +            +  D  +L R    + +I  +         I      
Sbjct: 338 VTGTISKNVKSGR----------RYDDHAILYRTNAQSRVIEEIL----IKSDIPYQIVG 383

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                D   IKDL+A  R I + +DD+S   ++  P     +  + K+      +  +++
Sbjct: 384 GIKFYDRKEIKDLLAYLRLISNPDDDISLQRIINVPKRGIGDTTVAKLAEEAVRQGTSIF 443

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +       ++             I  L  +  + S  +    +L   + R +      
Sbjct: 444 SVLGNLQGIDLNARAQGLLHEFRDMIDNLTQMVDYLSVTELTEKVLEMSQYRIELQREKT 503

Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAH-----SANHNEVR 573
            E    ++ +DEFL+ T+  E +N   +L   +++L                 A++N V 
Sbjct: 504 LESTARLENIDEFLSVTMDFEKRNEDKTLVAFLTDLALIADIDSMDKDDDGKPADNNSVV 563

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE PVVF++     +F H      +                          
Sbjct: 564 LMTMHSAKGLEFPVVFIIGMEESIFPHSRALNDNEELEEERRL----------------- 606

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                             YVG+TRA  QL +    + +   + +       + +   N
Sbjct: 607 -----------------AYVGITRAEKQLYLTCARSRTLFGRISANLPSRFLQEVPDN 647


>gi|298253336|ref|ZP_06977128.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
 gi|297532731|gb|EFH71617.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
          Length = 978

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/621 (17%), Positives = 202/621 (32%), Gaps = 115/621 (18%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L     T+     K    + I  K  D K  L   +++     + +      +    +
Sbjct: 232 ERLVKIIATELNVDIKRFTPRSILGKISDCKNSLITWREQLDMYANDYKPGVAGQQIAHA 291

Query: 127 L---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A Y+    +   +DF+DLI+ T  L+++   +A       ++  +ILID
Sbjct: 292 GNSEAVYATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPEAA---QYYRRKFRYILID 348

Query: 184 EVQDTSLIQWEVIRSLTE-----DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           E QDT+  Q+E+IR L       +       +++P ++  VGD  QSIY+F GA+ + + 
Sbjct: 349 EYQDTNHAQYELIRELAGVDVKQNSANPSQQNNTPASITVVGDSDQSIYAFRGADIRNIQ 408

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             ++             + I L  ++RST  IL   + V S  +  +             
Sbjct: 409 DFEKDFPN--------ATTIMLEQNYRSTQTILDAANAVISHNQGRKPKK---------- 450

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                      LW  +                          SA   A  +A  I+ + G
Sbjct: 451 -----------LWTALGKGTPITGYAA--------------DSAQQEAAWVAQEIARLAG 485

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +          +   D+ ++ R    +  +            +           +   +
Sbjct: 486 EE---------GVAYSDMAIMYRANAQSRSLEDAL----VKAGLPYQLVGGTKFYERREV 532

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA--- 474
           KD +A  + + + +DD++   +L  P           +    + +  + ++ ++      
Sbjct: 533 KDALAYLQSMANPDDDVNMRRILNVPKRGLGARAEALLTLYAQTQGVSFWQALEHLESIE 592

Query: 475 ---NCGISKFQHVIKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
                  +K +   + +H LI         P      IL      +        +    +
Sbjct: 593 GMPTRTATKLKEFRELMHNLITCMQNNDSKPSKVIDSILNDSGLLEDLQRSEDPQDAARV 652

Query: 527 DVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
           D L +  +     EQN+   S+   +               + +  +V +MT+HTAKGLE
Sbjct: 653 DNLSQLQSVAAEYEQNTPDASVAGFLETTALVADSDQLPDENEDTGKVTLMTLHTAKGLE 712

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVVFL       F H                                            
Sbjct: 713 YPVVFLTGMEQGTFPHSRAL----------------------------------EDDGEL 738

Query: 645 EEYNRLLYVGMTRASDQLIIC 665
            E  RL YVG+TRA  +L + 
Sbjct: 739 CEERRLAYVGITRAKQRLYVT 759


>gi|307706682|ref|ZP_07643488.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321]
 gi|307617926|gb|EFN97087.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321]
          Length = 763

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 104/591 (17%), Positives = 195/591 (32%), Gaps = 122/591 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVSQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIQNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNADGEQIVYYRANDELDE-------AIFVARTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQNMSMLDASANIMLSGIKGKVAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  D    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMILDLREQLDQLNITDLVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTSDGPEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                          +   EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDQDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            YVG+TRA   L +   ++     ++N       + +   +    + +   
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARP 651


>gi|220906933|ref|YP_002482244.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425]
 gi|219863544|gb|ACL43883.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425]
          Length = 797

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/572 (18%), Positives = 196/572 (34%), Gaps = 102/572 (17%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+++   N  LDF+DLI+    L K+ +    +     Q  +HIL+DE QD
Sbjct: 206 RVIANVYGMYQDSLAANNALDFDDLILMLVQLFKQNE---QVLSYWHQRFHHILVDEYQD 262

Query: 188 TSLIQWEVIRSLT---EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q+E+IR L     +     N     R++F VGD  QSIYSF  A+ K +L  ++  
Sbjct: 263 TNRTQYELIRLLATNGAEPQQYHNWEEDNRSIFVVGDVDQSIYSFRAADFKILLDFQQDF 322

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
             R  +  +  ++++L  ++RST +IL   +++              T    H       
Sbjct: 323 GDRLPD-ERTATMVKLEENYRSTENILQAANELIENNTERIDKVLKPTRGCGHA------ 375

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                                            +++     A  +   I +++       
Sbjct: 376 -----------------------------IYCHRDNDEIAEAEFVVEQIRSLV------- 399

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
              +         +L R    +             + I           D   IKD++A 
Sbjct: 400 --HQPGFDWNSFAILYRTNAQSRPFEEAL----VRWAIPYTVVGGLKFYDRKEIKDVLAY 453

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I++  D LS + ++ +P     +  + ++    +     ++E IQ        A   
Sbjct: 454 LRLIINPADSLSLLRVINTPRRGIGKTTLDRLTDAAKALGVPLWEIIQDETSVKTLAGRS 513

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLN 534
                  +  I +L       S  +    +L          S+  +E  +    + E  N
Sbjct: 514 AKPMLSFVGLIQQLTAQVNEVSAPEVVQAVLEGSGYLDDLKSQGTDEADERLRNVQELYN 573

Query: 535 FTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             L+  E++   +L E +++                  V +MT+H++KGLE PVVFLV  
Sbjct: 574 AVLQFDEESEGGTLSEFLAKASLASDLD--DLGEGKATVSLMTLHSSKGLEFPVVFLVGL 631

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F +                                  L      ++ EE  RL YV
Sbjct: 632 EQGLFPN----------------------------------LRALDDPASLEEERRLCYV 657

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
           G+TRA ++L I               +    +
Sbjct: 658 GITRAQERLFISHVRERRLYGNREPASPSLFL 689


>gi|209525368|ref|ZP_03273909.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328]
 gi|209494219|gb|EDZ94533.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328]
          Length = 779

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 106/556 (19%), Positives = 182/556 (32%), Gaps = 99/556 (17%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + + Y++A   N  LDF+DLI+    L ++ +    +     Q+  HIL+DE QD
Sbjct: 205 RVTSEVYSLYQDALAANNALDFDDLILVPVALFRQNE---QVLAYWHQKFCHILVDEYQD 261

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++IR LT +     +  +   R++F VGD  QSIYSF  A+ + +L  ++    
Sbjct: 262 TNRTQYDLIRLLTTNGEAPPSFHNWQNRSIFVVGDVDQSIYSFRMADYRIMLEFQQDFGD 321

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
              +   + ++I+L  ++RS  +IL V + +              T              
Sbjct: 322 GLPDDDSR-TLIKLEENYRSRENILEVANHLIQNNTTRIDKILRPTR------------- 367

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                      D + +       A  +   I  +I  +      
Sbjct: 368 ---------------SPGVPVCCHKADDEMAE-------ANFVVDNIRTIINQNP----- 400

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               I      +L R    +     +         I           D   IKD ++  R
Sbjct: 401 ---EIGFGSFAILYRTNAQSRPFEDVL----LRENIRYNIVGGLKFYDRREIKDAISYLR 453

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGIS 479
            I +  D +S   ++  P        I  +     +    ++E I         +     
Sbjct: 454 VIANPADSVSLQRVINVPRRGIGRTTIDGLNNAAQQLGVPLWEIISDQDSVNTISGRAAK 513

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536
                 + I       +  +  +    IL      Q    +  +E     D L E  N  
Sbjct: 514 SVNRFAQMIQSWRDRLETTTALEILDGILEDSGYSQDLKQQGTDEADNRLDNLRELCNAV 573

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            +  E+   +SLQ  ++                   V +MT+H+AKGLE P+VFLV    
Sbjct: 574 SQFQEEQEDTSLQAFLASASLSSDLDN--LQEGEEAVSLMTLHSAKGLEFPIVFLVGLEE 631

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F +       +                                    EE  RL YVG+
Sbjct: 632 GLFPNFRSINDPLS----------------------------------LEEERRLCYVGI 657

Query: 656 TRASDQLIICKHSNTS 671
           TRA +QL I       
Sbjct: 658 TRAQEQLFITHARERR 673


>gi|170077156|ref|YP_001733794.1| ATP-dependent DNA helicase II PcrA [Synechococcus sp. PCC 7002]
 gi|169884825|gb|ACA98538.1| ATP-dependent DNA helicase II PcrA [Synechococcus sp. PCC 7002]
          Length = 788

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 118/623 (18%), Positives = 200/623 (32%), Gaps = 99/623 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+ A   N  LDF+DLI+    L ++ +    I      + +HIL+DE QD
Sbjct: 203 KVVAEVYEAYQTALAANNSLDFDDLILIPVRLFQQNES---ILGYWHSQFHHILVDEYQD 259

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSP-RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+ IQ+E+IR L+ +    +       R+LF VGD  QSIYSF  A+   +L  +     
Sbjct: 260 TNRIQYELIRLLSTNGETNQAALGWHNRSLFVVGDADQSIYSFRMADFTILLEFQENFGD 319

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           R  +   + ++++L  ++RS  +IL   + +             +T              
Sbjct: 320 RLPDDETQ-TMVKLEENYRSRENILKAANALIEQNSQRIDKVLKATR------------- 365

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                              +E +    D+  +E      AR +   I  +   +      
Sbjct: 366 ----------------GAGEEIYCHKADNENEE------ARFVLNQILGLRRKNPELD-- 401

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   D  +L R    +         L     I       F   D   IKD +A  +
Sbjct: 402 ------WGDFAILYRTNAQSRPFED----LLIRNNIPYQVVGGFKFYDRKEIKDALAYLK 451

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGIS 479
            I +  D LS + ++ +P     +  + K+     E    ++E +         A     
Sbjct: 452 AIANPADTLSLMRVINTPKRGIGKTTVDKLNHAAQELGCPLWEILSDETSVATIAGRAAR 511

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536
           K       I E+          D    ++           +   E     + + E  N  
Sbjct: 512 KINEFAGLIQEMQGKMATMRGADILDYVMENSGYIDDLKMQGTEEADSRVENISELYNAM 571

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  ++N  SSL   +              +    +V +MT+H+AKGLE PVVFLV    
Sbjct: 572 LQFQDENEDSSLNGFLENASLASDLD--DLNDESQQVSLMTLHSAKGLEFPVVFLVGLEQ 629

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F H       +                                    EE  RL YVG+
Sbjct: 630 GLFPHTRSLNDPV----------------------------------ALEEERRLCYVGL 655

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA +QL +                    + +                  K E      S
Sbjct: 656 TRAQEQLFLSYTRERYMWGYREPAVASQFLAELPQELVTSNGRSPAPMPPKQEPKMMSIS 715

Query: 716 THHPENTPLEREETIKQLMDEQK 738
                    ER+    ++  ++ 
Sbjct: 716 QKQRSQKRRERQAARTEVAQQKW 738


>gi|322389226|ref|ZP_08062787.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
           903]
 gi|321144131|gb|EFX39548.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
           903]
          Length = 767

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/592 (16%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 172 QIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPD---VLTYYQQKFQYIHVDEYQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V     + +  +                   
Sbjct: 277 ------DAKVVLLEENYRSTKTILQAANDVIKNNRHRRPKN------------------- 311

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 312 --LW-------TQNEDGEEIVYYRANDEQDE-------AVFVAKTIEELSREA------- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + +D  VL R    +  I            I               I+D++A    
Sbjct: 349 --GYKHRDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVIAYLNL 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI    + +  ++ +                  
Sbjct: 403 IANLSDNISFERIINEPKRGIGPGTVDKIRDFAQMQESSLLDASANIMLSGIKGKAAQAI 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  +    +L          ++   E    I+ + EFL+ T  
Sbjct: 463 WDFANLILDLRERLDQLTITELVEEVLDKTGYMTALTNQGNLESQARIENIQEFLSVTKN 522

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    +++   +L   +++L     T     +   +EV +MT+H AKGLE PVVFL
Sbjct: 523 FDENGETVDDESGVETLSRFLNDLALIADTD--DGAQETSEVTLMTLHAAKGLEFPVVFL 580

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 581 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 606

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     +++       + +   +    + +    
Sbjct: 607 AYVGITRAEKVLFLTNANSRLLFGRTSYNRPTRFINEISSDLLSYQGLARPA 658


>gi|315613237|ref|ZP_07888147.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC
           49296]
 gi|315314799|gb|EFU62841.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC
           49296]
          Length = 763

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/592 (16%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNADGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQEMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMILDLREQLDQLTITELVEAVLEKTGYVDILNAQATLESKVRVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVF+
Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     +++       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTSYNRPTRFINEISSDLLEYQGLARPA 652


>gi|260584785|ref|ZP_05852530.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC
           700633]
 gi|260157442|gb|EEW92513.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC
           700633]
          Length = 755

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 125/777 (16%), Positives = 243/777 (31%), Gaps = 141/777 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L   +V   N             + ++   L            
Sbjct: 21  GAGSGKTRVLTHRMAYILAEEEVHPWNILAITFTNKAAREMKERVSQLVGPQAEDMWVST 80

Query: 66  FSLLSSFFLTQKFTPQ------------------KNIITQ-EINKKSPDLKEKLKKSQDE 106
           F  +    L +                       K I+ + +I+ +  D +  L +    
Sbjct: 81  FHSMCVRILRRDIELLGYQRSFTICDPSEQQTAMKRILKKLDIDSEKYDYRMILNRISQA 140

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D     K  K T     +       Y++   K+  LDF+DLI+ T  L +K   +
Sbjct: 141 KNDLEDVEEFSK--KYTGYVEQIIAKCYREYQKELAKSMTLDFDDLIMLTVQLFQKHPET 198

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                   Q+  +I +DE QDT+  Q+ ++  L + F          + +  VGD  QSI
Sbjct: 199 ---LQYYQQKFQYIHVDEYQDTNHAQYRLVTMLAKKF----------KNICVVGDADQSI 245

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  ++  Q           ++ L  ++RST  IL   + V     N + 
Sbjct: 246 YGWRGADMSNILEFEKDYQN--------AKVVLLEQNYRSTKTILQAANHVIENNFNRKV 297

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW             Q  ++        +        
Sbjct: 298 KK---------------------LW-------TENEEGQPITYYRAQSEQDEG------- 322

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R +   I +++                 D  +L R    + ++            I    
Sbjct: 323 RYVLSQIQSLLRDG----------YHYDDFAILYRTNAQSRVMEENL----LKSNIPFRL 368

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  + L IKDL+A  R I++ +DDLSF  ++ SP        + K+         +
Sbjct: 369 VGGQRFFERLEIKDLLAYLRLIVNPQDDLSFRRIVNSPKRGIGATSLDKLNDFASMHQFS 428

Query: 466 VYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           + E   + A            +   + I +L  + +F S  +F   ++           +
Sbjct: 429 LLEASSQIAISPLSGKAAKALEKFAEMIEDLRKMQEFLSISEFVEQVIEKTGYLAALEQQ 488

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ------NSYSSLQELISELEQYPPTIKRAHSANHNE 571
              E     + + EF++   + EQ      +  S L + +++L                 
Sbjct: 489 HTMEADARIENIQEFISVAKQFEQDRLEEESEDSPLLQFLTDLSLVSDADSDDGDGR--M 546

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVF++     +F                                 
Sbjct: 547 VTLMTLHAAKGLEFPVVFIIGLEEGIFPSLRSI--------------------------- 579

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA  +L +    +     ++        + +   +
Sbjct: 580 ------MENGDDVEEERRLAYVGITRAEQKLFLTNAYSRLLYGRTQTNRPSRFLLEIGED 633

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
               K+ +  +  +++       ++         R ++       + +      P++
Sbjct: 634 LFDSKQQQSYSYTSRESSSFTSKTSSSGSLFDKYRAKSQATAYQPKAVQPSSIQPVR 690


>gi|312876019|ref|ZP_07736008.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797217|gb|EFR13557.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 714

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 107/550 (19%), Positives = 180/550 (32%), Gaps = 114/550 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +  K+    DF+DL+  T  L +       I  K   +  +IL+DE QDT+  
Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNHA 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +  L++            R +  VGD+ QSIYSF GA  K +L  +++        
Sbjct: 226 QFYFVYLLSQ----------KHRNVCVVGDDDQSIYSFRGANIKNILEFEKVF------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL+  ++V       +                        LW
Sbjct: 269 -SDAKVIRLEKNYRSTKTILSAANEVIKHNYYRKSKR---------------------LW 306

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++    S FD + +       A  +A ++ N+I +           +
Sbjct: 307 -------TDNTEGEKIFLYSAFDEVNE-------AEFVASSVKNLIESG----------V 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VL R    +             Y +           +   IKD++A  R I + 
Sbjct: 343 LPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISKFQHVI 485
            DDLS   ++  P        I KI     E      T  +      F      K    I
Sbjct: 399 HDDLSLFRIINVPRRGIGNSTIEKIKALSEEYNVSAYTVLLERAKFDFDKKTYEKLNSFI 458

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             I +L   A+  S      L+L      +  +S    E       +++ ++     E+ 
Sbjct: 459 SLIEDLKAEAEDLSVSSAIKLVLDKTGYLESLLSSKSEEEFQRAKNIEQLISAAAIFEEE 518

Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +LQ  ++ +                +V +MTVH AKGLE  VVFL      +F   
Sbjct: 519 NEEPTLQNFLNSITLSSEEEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFPLV 575

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             ++        ++                                    YV +TRA   
Sbjct: 576 RAEEPVEAEKELEEERRL-------------------------------CYVAITRAKKL 604

Query: 662 LIICKHSNTS 671
           L++   +N  
Sbjct: 605 LVLTYANNRR 614


>gi|303257893|ref|ZP_07343902.1| DNA helicase II [Burkholderiales bacterium 1_1_47]
 gi|302859236|gb|EFL82318.1| DNA helicase II [Burkholderiales bacterium 1_1_47]
          Length = 787

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 106/596 (17%), Positives = 194/596 (32%), Gaps = 114/596 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + A YE   ++    DF +L++   +LL + ++   IR+   +    IL+DE QDT+++
Sbjct: 175 QIYAMYEAVLQREGACDFAELLLRAYELLSRNEM---IRHHYQERFRFILVDEFQDTNVL 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E ++ L      G    + P  +FAVGD+ QSIY+F GA    ++   +  +      
Sbjct: 232 QYEWLKLLA-----GLGEKNPPNAVFAVGDDDQSIYAFRGANVGNMMSFVQEFR------ 280

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RS  +IL   + + S      G +                     LW
Sbjct: 281 --IGEPIRLEQNYRSQGNILDAANALISNNSERMGKN---------------------LW 317

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    + N     +                AR +  TI   I             +
Sbjct: 318 TDAGKGEKIRANRSDNDFD--------------EARFVCSTIQEYIDKG----------V 353

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +DI +L R    + L             I  +        D   IK+ MA  R   + 
Sbjct: 354 SPEDIAILYRSNAQSRLFETEL----TRRGIPFMVYGGLRFFDRAEIKNAMAYMRLAENP 409

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD +F+ ++  P        I  +         +++E +Q       +KF    + I  
Sbjct: 410 SDDSAFLRVVNVPARGIGAKSIENLVDFATTNGISLFESMQYIRGAAANKFAAFKEIIDT 469

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN---------- 539
           L           F    +     R  + +   G+E I+ L E  +               
Sbjct: 470 LRVAKDEMPLPAFVDFTVEKSGLRNMYELDPNGSERIENLQELTSAAQGFIKEEAIDTEN 529

Query: 540 -EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            +  +  +L  L   +        +       + V++MTVH +KGLE  +VF+      +
Sbjct: 530 SDGTAVENLSALAGFVSHASLEAGENQAQVGQDAVQLMTVHASKGLEFDIVFITGLEEDM 589

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H                                        K   +E  RL+YV +TR
Sbjct: 590 FPH----------------------------------FRSKNDKKALQEERRLMYVAITR 615

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMV-YDSFHNDERVKKIKLTNSINKDEWIAY 712
           A  +L +        + +S        +        + + +    +    ++  ++
Sbjct: 616 ARKELYLTLAEERMLQGRSFSSYPSSFLTEIPGETLKWLSRNPFESRYEAEDEDSW 671


>gi|186681485|ref|YP_001864681.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102]
 gi|186463937|gb|ACC79738.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102]
          Length = 773

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 108/633 (17%), Positives = 207/633 (32%), Gaps = 103/633 (16%)

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAH 136
           T  K ++ +E+N        +    +      +++  + + F+    +    +   +   
Sbjct: 157 TLIKELVNKELNLDDKKFDAR--SVRYAISNAKNQGLSPQEFEQDQPNYRGRVIAQVYNL 214

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +N  LDF+DLI+    L ++ +    +     ++  HIL+DE QDT+  Q+++I
Sbjct: 215 YQDKLAQNNALDFDDLILVPTRLFQQNE---QVLGYWHRKFRHILVDEYQDTNRTQYQLI 271

Query: 197 RSLTEDFFV-GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
             L  +            R++F VGD  QSIYSF  A+   +L  +        +   + 
Sbjct: 272 NLLVTNGETKKTEWQWENRSVFVVGDADQSIYSFRMADFTILLGFQEDFGDGLVDDDTR- 330

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
           ++++L  ++RS  +IL   +++              T                       
Sbjct: 331 TMVKLEENYRSCENILQAANELIENNTQRIDKILKPTR---------------------- 368

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    +Q +     + L +       A  +   I+ +   +               
Sbjct: 369 ------GAGEQITCHKADEELAE-------AAFVIDQINTLKNQNPELD--------WGS 407

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    +         L   Y+I           D   IKD++A  R I +  D +
Sbjct: 408 FAILYRTNAQSRPFEE----LLVKYQIPYTVVGGMRFYDRKEIKDVIAYLRAIANPSDTV 463

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYI 488
           S + ++ +P     +  I  +     +   T++E       +   A        +    I
Sbjct: 464 SLLRVINTPRRGVGKTTIDALMNASQQLGTTLWEILSDETSVNTLAGRATKAVNNFAAMI 523

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRN-EQNSY 544
                        +    IL      Q  +++  +E  D    + E  N  L+  E+N  
Sbjct: 524 SRWQGQIATLPVTEVLQGILEDSGYVQDLMNQGTDEATDRVQNVQELYNAALQFQEENEE 583

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            SL++ +S                   V +MT+H +KGLE PVVFLV     +F      
Sbjct: 584 ISLRDFLSSAALSSDLDN--LKEGQTAVSLMTLHASKGLEFPVVFLVGLEQGLFPGYRSL 641

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                ++ EE  RL YVG+TRA ++L +
Sbjct: 642 SDP----------------------------------ASLEEERRLCYVGITRAQERLYL 667

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                               + +        K+
Sbjct: 668 SHARERRLYGSREPAMRSQFLDELPEELLATKR 700


>gi|331266303|ref|YP_004325933.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5]
 gi|326682975|emb|CBZ00592.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5]
          Length = 763

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/592 (16%), Positives = 190/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNQNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNADGEQIIYYRANDEQDE-------AIFVAKTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQDMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +        +  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WEFANMILDFREQLDQLTITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVF+
Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLDYQGLARPA 652


>gi|172038900|ref|YP_001805401.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142]
 gi|171700354|gb|ACB53335.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142]
          Length = 772

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 110/562 (19%), Positives = 187/562 (33%), Gaps = 99/562 (17%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           + + A   +   +   Y+     N  LDF+DLI+    L ++ +    I      +  HI
Sbjct: 199 EHSYAKGRIIAEVYQEYQNQLAANNALDFDDLILIPVRLFQQNES---ILGYWHSQFKHI 255

Query: 181 LIDEVQDTSLIQWEVIRSLTEDF-FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           L+DE QDT+ IQ+E+I+ LT +        +   R++F VGD  QSIYSF  A+   +L 
Sbjct: 256 LVDEYQDTNRIQYELIQLLTTNGELQKSEYNWQNRSIFVVGDADQSIYSFRMADFTILLN 315

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +        +   + ++++L  ++RST  IL   +K+              T       
Sbjct: 316 FQSDFGDGLPDEDTR-TMVKLEENYRSTETILQAANKLIENNSQRIDKILRPTR------ 368

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                    ++       D   +       A  +   I  ++ T
Sbjct: 369 ----------------------GEGEEIYCYQAEDERIE-------ADFVISKIQELVET 399

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
           +          +   D  +L R    +               I       F   D   IK
Sbjct: 400 NP--------ELNWGDFALLYRVNAQSRPFEDNL----IRNNIPYTIVGGFKFYDRQEIK 447

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQK------ 472
           D +A  R I++  D +S + ++ SP     +  +  +     E E  ++E I        
Sbjct: 448 DSLAYLRLIINPFDTVSLLRVINSPRRGIGKTSVDSLLKAAQELEIPLWEIISDETSVKT 507

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529
            A             I EL    +  S  + F  ++       +   +   E     + +
Sbjct: 508 LAGRAAKSVNKFATMIKELQGKLKELSATELFDQVMELSGYVHELKQKGTEEADNRLENI 567

Query: 530 DEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            E  +   +  E +  +SLQ  ++                  +V +MT+H+AKGLE P+V
Sbjct: 568 YELYSAIAQYQEDSEDTSLQGYLTNASLASDLDN--LDEGQEKVSLMTLHSAKGLEFPIV 625

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FLV        H       +                                    EE  
Sbjct: 626 FLVGLEQGTLPHIRSLNDPLS----------------------------------LEEER 651

Query: 649 RLLYVGMTRASDQLIICKHSNT 670
           RL YVG+TRA +QL I      
Sbjct: 652 RLCYVGLTRAQEQLFITHARER 673


>gi|323705998|ref|ZP_08117568.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534612|gb|EGB24393.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 716

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 105/548 (19%), Positives = 183/548 (33%), Gaps = 113/548 (20%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             LDF+D+II T +L +K +    I      +  +I+IDE QDT+  Q+E +  L + + 
Sbjct: 183 NALDFDDIIIKTIELFQKNED---ILRYYQDKFRYIMIDEYQDTNRPQYEFVNLLAKKY- 238

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                    R L  VGD+ QSIY + GA+ K +L  ++   +          +I+L  ++
Sbjct: 239 ---------RNLCVVGDDDQSIYGWRGADIKNILDFEKDYPE--------AKVIKLEQNY 281

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST  IL   + V       +                        LW       D++   
Sbjct: 282 RSTQVILDAANSVIDNNVKRKRKR---------------------LW------TDNKNGE 314

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           +   W        +  +    A  I  TI N++              +  D  VL R   
Sbjct: 315 KIVVW--------ESQNERDEANFIIETIKNLVSEGR----------KYSDFAVLYRTNA 356

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            + +             I           D   IKD++A  R +++  DD+S   ++  P
Sbjct: 357 QSRIFEEAFMA----NDIPYKLVGALRFYDRKEIKDIIAYLRILVNPYDDVSLKRIINVP 412

Query: 445 LFNFSEDDIFKI-CTQRHETETVYEY--IQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
                E  I  +         ++Y      + +           ++I +LI    F +  
Sbjct: 413 KRGIGESTIASLEKYAVEHDTSMYFAIPHVEVSGRTRKALDSFKEFIDDLISQLDFMTVT 472

Query: 502 DFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQY 557
           +    +L      ++  +    E    I+ ++EF+       E +   SL+  +S +   
Sbjct: 473 EVIDYVLDKTGYIEELKADGTEESEGRIENINEFIGAAREFMESSQEKSLEAFLSGITLV 532

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                         V +MT+H+AKGLE PVVF+      +F +                 
Sbjct: 533 SDIDT--AGEIGESVVLMTLHSAKGLEFPVVFIAGMEEGIFPNSMSFVYEHELEEERRL- 589

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                                             YVG+TRA ++L +    N +   K  
Sbjct: 590 ---------------------------------CYVGITRAKERLFMTYARNRNLYGKPQ 616

Query: 678 QRTWYDMV 685
             T    +
Sbjct: 617 YNTASRFI 624


>gi|315649755|ref|ZP_07902838.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453]
 gi|315274729|gb|EFU38110.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453]
          Length = 776

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 119/723 (16%), Positives = 227/723 (31%), Gaps = 133/723 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   + +  +             + ++   L            
Sbjct: 33  GAGSGKTRVLTHRIGYLIATRKAAPWSILAITFTNKAAREMQERVSKLVGREGQDIWVST 92

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110
           F  +    L +            I   +  L                 + K  Q      
Sbjct: 93  FHSMCVRILRKDIERIGFTSNFSILDSTDQLSVIRNVMKHHNIDPKKFEPKAVQAAMSAA 152

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   + + ++        +L   +   Y++  K N  LDF+DLI+ T  L K+      
Sbjct: 153 KNELISPQQYEQKAGDYFESLVAKVYTEYQKRLKSNNSLDFDDLIMTTIQLFKE---VPE 209

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ + R L +          S   +  VGD  QSIY 
Sbjct: 210 VLDFYQRKFQYIHVDEYQDTNRAQYMLCRMLAD----------SHHRICVVGDSDQSIYR 259

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++           +   I L  ++RSTA+IL   + V  +    +  +
Sbjct: 260 WRGADITNILNFEQDYP--------EARTILLEQNYRSTANILNAANNVIGLNTGRKPKN 311

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       +    P+ + +    +              
Sbjct: 312 ---------------------LW------TEQGEGPKIKVFRGDTEHDEGY--------F 336

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   IS  I                +D  +L R    + +I  +         I      
Sbjct: 337 VTSEISKNINAGK----------NYQDHAILYRTNAQSRVIEEIL----IKSDIPYQIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKD++A  R I + +DD+S   ++  P  +  +  + K+     E      
Sbjct: 383 GIKFYDRKEIKDMLAYLRLISNPDDDISLTRIINVPKRSIGDTTVAKLAAAAGERGISIF 442

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +      FA    +        I  L  + +F S  +    IL   + R +  +   
Sbjct: 443 RVLEIVDDLGFAGRTRNALVGFYDMIAALSRMVEFLSVTELTEKILEMSEYRLELQNENT 502

Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMT 576
            E    ++ +DEFL+ T   E+ N   SL   +++L                 + V +MT
Sbjct: 503 IESRSRLENIDEFLSVTQEFEKNNEDKSLISFLTDLALIADIDSMNDDEEDRDDAVVLMT 562

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE PVVF++     VF H      +                             
Sbjct: 563 MHSAKGLEFPVVFIIGMEEGVFPHSRAFMDNEELEEERRL-------------------- 602

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                          YVG+TRA  QL +      +   ++        + +     +   
Sbjct: 603 --------------AYVGITRAEKQLFLSCARMRTLFGRTTANPPSRFLEEIPEELKEDT 648

Query: 697 KIK 699
           ++ 
Sbjct: 649 QMA 651


>gi|307152628|ref|YP_003888012.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822]
 gi|306982856|gb|ADN14737.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822]
          Length = 772

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 113/616 (18%), Positives = 213/616 (34%), Gaps = 103/616 (16%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              S  S    +   +  K+I+T+E+       + +    + +    ++   + + +   
Sbjct: 142 SWKSNFSIVDESDAQSLIKSIVTKELQLDEKKFEPR--TVRYKISNAKNLGLSPQQYARE 199

Query: 124 LASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             +    +   +   Y++    N  LDF+DLI+    L ++ +    I      +  HIL
Sbjct: 200 NPNYQGKVVAEVYEEYQKQLAANNALDFDDLILIPVRLFEQNET---ILGYWHNQFRHIL 256

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           +DE QDT+ IQ+E IR LT +    K+  +   R++F VGD  QSIYSF  A+   +L  
Sbjct: 257 VDEYQDTNRIQYEFIRLLTTNGETRKSEWNWQDRSIFVVGDADQSIYSFRMADFTILLNF 316

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           +        +   + ++++L  ++RS  +IL   +++    +        +T +I     
Sbjct: 317 QADFGDGLPDEMTR-TMVKLEENYRSRENILQAANQLIENNQQRIEKILKATRSI----- 370

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                   +        D   +       A  +   I  +   +
Sbjct: 371 -----------------------GEDIFCYKADDERDE-------AGFVIRKIKQLKQEN 400

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                            +L R    +            +  I       F   D   IKD
Sbjct: 401 PELD--------WGSFAILYRINAHSRSFEEAL----IESNIPYTMVGGFRFYDRQEIKD 448

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------F 473
            +A  + I++  D +S + ++ +P     +  +  +     E    ++E I         
Sbjct: 449 SLAYLKLIVNPSDTVSLLRVINTPRRGIGKTSLEALQGAAKELGVPLWEIISDETSVNTL 508

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLD 530
           A           K I +     +F S  +    ++       +   +  +E  D    ++
Sbjct: 509 AGRAAKSVNQFAKMIQQFQAQTEFLSAAEMLDRVMQETGYIAELQQKGTDEAEDRIANIN 568

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           E LN   + ++    +   L   LE+    +          +V +MT+H+AKGLE PVVF
Sbjct: 569 ELLNAVQQFQEEYEET--SLQDYLEKASLASDLDQLKEGEQKVSLMTLHSAKGLEFPVVF 626

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           LV     +F H       +                                  + EE  R
Sbjct: 627 LVGLEEGLFPHIRSLNDPL----------------------------------SLEEERR 652

Query: 650 LLYVGMTRASDQLIIC 665
           L YVG+TRA +QL + 
Sbjct: 653 LCYVGLTRAQEQLFLT 668


>gi|297242864|ref|ZP_06926802.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
 gi|296889075|gb|EFH27809.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
          Length = 981

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 108/628 (17%), Positives = 203/628 (32%), Gaps = 122/628 (19%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L     T+     K    + I  K  D K  L   +++     + +      +    +
Sbjct: 220 ERLVKIIATELNVDIKRFTPRSILGKISDCKNSLITWREQLDMYANDYKPGVAGQQIAHA 279

Query: 127 L---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A Y+    +   +DF+DLI+ T  L+++   +A        +  +IL+D
Sbjct: 280 GNSEAVYATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPEAA---QYYRHKFRYILVD 336

Query: 184 EVQDTSLIQWEVIRSLTE------------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           E QDT+  Q+E+IR L              +       +S+P ++  VGD  QSIY+F G
Sbjct: 337 EYQDTNHAQYELIRELAGVDVKQNNAYAKQNNANTSQQNSTPASITVVGDSDQSIYAFRG 396

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + +   ++             + I L  ++RST  IL   + V S  +  +      
Sbjct: 397 ADIRNIQDFEKDFPN--------ATTIMLEQNYRSTQTILDAANAVISHNQGRKPKK--- 445

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                             LW  +             +  +         SA   A  +A 
Sbjct: 446 ------------------LWTAL-------GKGAPITGYAA-------DSAQQEAAWVAQ 473

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I+ + G +          +   D+ ++ R    +  +            +         
Sbjct: 474 EIARLAGEE---------GVAYSDMAIMYRANAQSRSLEDAL----VKAGLPYQLVGGTK 520

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470
             +   +KD +A  + + + +DD++   +L  P           +    + +  + ++ +
Sbjct: 521 FYERREVKDALAYLQSMANPDDDVNMRRILNVPKRGLGARAEALLTLYAQTQGVSFWQAL 580

Query: 471 QKFA------NCGISKFQHVIKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           +             +K +   + +H LI         P      IL      +       
Sbjct: 581 EHLESIEGMPTRTATKLKEFRELMHNLITCMQNDDSKPSKVIDSILNDSGLLEDLQRSED 640

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTV 577
            +    +D L +  +     EQN+   S+   +               + +  +V +MT+
Sbjct: 641 PQDAARVDNLSQLQSVAAEYEQNTPDASVAGFLETTALVADSDQLPDENEDTGKVTLMTL 700

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           HTAKGLE PVVFL       F H                                     
Sbjct: 701 HTAKGLEYPVVFLTGMEQGTFPHSRAL--------------------------------- 727

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                   E  RL YVG+TRA  +L + 
Sbjct: 728 -EDDGELCEERRLAYVGITRAKQRLYVT 754


>gi|323490411|ref|ZP_08095623.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2]
 gi|323395910|gb|EGA88744.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2]
          Length = 737

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 112/625 (17%), Positives = 201/625 (32%), Gaps = 115/625 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YE+  KKN  LDF+DLI+ T +L         +      + ++I +DE QDT+
Sbjct: 176 VSDVYTAYEKRLKKNQSLDFDDLIMTTLNLFNT---VPEVLEYYQNKFHYIHVDEYQDTN 232

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L   F          + +  VGD  QSIY + GA+   +L  ++       
Sbjct: 233 NAQYQLVQKLASKF----------KNICVVGDSDQSIYRWRGADITNILSFEKDYPN--- 279

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L  ++RST  IL   + V     +                          
Sbjct: 280 -----AKVIMLEQNYRSTKRILQAANDVIQKNTSRYPKEL-------------------- 314

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                             +     D   +       A+ +  TI  ++  +         
Sbjct: 315 --------RTENDEGTAITLHKAGDERQE-------AQFVVQTIQKLMDEE--------- 350

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  D  +L R    + ++  +         +S          D   IKDL+A  R I 
Sbjct: 351 NYKTSDFAILYRTNAQSRIMEEMF----VKSNMSYTIVGGTKFYDRKEIKDLLAYLRLIA 406

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANC-----GISKFQH 483
           + +DDLS   ++  P          K+      +  T+ + +Q+                
Sbjct: 407 NNDDDLSLARVINEPKRGIGATSFEKMARFAIEQDRTIMDALQEADFMGLTPKTAQTALE 466

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540
               +     + ++ S  +    +L     RQ   +     G   ++ LDEFL+ T   E
Sbjct: 467 FRNMMASFTQMQEYLSVTELVEEVLKKSGYRQMLQNDKTIEGESRLENLDEFLSVTKAFE 526

Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVF 598
            Q+   SL   +++L             + +  + +MT+H AKGLE PVVF++     VF
Sbjct: 527 KQSDDKSLVAFLTDLALISDIDSLDDEEDADGPIILMTMHAAKGLEFPVVFIIGLEENVF 586

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                                   YVG+TRA
Sbjct: 587 PHSRSNNDDEELEEERRL----------------------------------AYVGITRA 612

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTH 717
             +L +   S+ +   KSN       + +   +  E+ +      +      I    +  
Sbjct: 613 EQRLYLTHASSRTLFGKSNFNMPSRFISEISEDLIEQTRAHHRAGATTSYRQIPKRPAVT 672

Query: 718 HPENTPLEREETIKQLMDEQKIPKK 742
            P       E+   +  D+    K 
Sbjct: 673 RPSYNQSGSEKLGWKTGDKATHKKW 697


>gi|240138235|ref|YP_002962707.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase
            [Methylobacterium extorquens AM1]
 gi|240008204|gb|ACS39430.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase
            [Methylobacterium extorquens AM1]
          Length = 1116

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 152/876 (17%), Positives = 295/876 (33%), Gaps = 91/876 (10%)

Query: 92   KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
            ++    E  K          +        +  +  +   + +   Y+E K+   +LDF+D
Sbjct: 303  EADQFHEAAKALHGACCDTWESMRANAASELLVRLVVQVREVLRRYQERKRAGALLDFDD 362

Query: 152  LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
            LI +   LL+  +    +R  + +   H+L+DE QDT  +Q E++  L  +        +
Sbjct: 363  LIASAATLLRDHE---EVRQALGRRYRHVLVDEFQDTDPLQAEILWLLCGELPADAAGAT 419

Query: 212  ------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                   P  LF VGD KQ+IY F GA+    ++ +   + ++ +      +I +  +FR
Sbjct: 420  WTDRVLRPGALFLVGDPKQAIYRFRGADVSTYVQARDCIRAKSPDD-----VISVSTNFR 474

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            S   IL  VD  F      +G                 Q G V L           C   
Sbjct: 475  SCRSILAFVDNRFREVLQVEG-----------------QPGYVALDPFHEDHDRGPCVAA 517

Query: 326  QESWTSYFDS-LPQESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKR 383
             +   +  D      +     A  +A   + +IG   +  +    R++QA DI +L    
Sbjct: 518  LDIPAAEGDGKPSAGALRDAEAEAVADLCARLIGQRLVTCSRNGTRILQAGDIALLAPSG 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             D                I V             I+DL+AL R +    D L+   +L+ 
Sbjct: 578  SDLWRYEEALEA----RGIPVSTQAGKGFFRRQEIQDLIALTRVLADPRDTLALGALLRG 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQF 497
            P    +++++  +           +  Q        A+      + VI  +  L   A  
Sbjct: 634  PAVGLTDEELLDLVDALPRDPERPDARQKLRLGLDIAHVAHPVAREVIGRLQVLARRALG 693

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQ-ELISE 553
             +PHD  +  + A + R     R           +D FL  +         +    +   
Sbjct: 694  TTPHDILSQAVDAIRLRPVVRQRHDGHAERALANVDLFLEMSRPYAVRGLRAFARAMKVA 753

Query: 554  LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
             +    T++    A    V + T+H +KGLE PVV  ++T          +   +  +L 
Sbjct: 754  WDGRTRTVEGRPDAQEAAVSLFTMHASKGLEWPVVIPINT--------STRTKAVSGALV 805

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            D P   ++ P    R     D +   ++    E  RL YV  TRA + L++ +    S+ 
Sbjct: 806  DRPANCLYCPVFGVRPAGYEDALDRERREVGNERVRLWYVAATRARETLVLPRFPEPSDR 865

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
                  +W  ++         +   +L                   E    +  E     
Sbjct: 866  T-----SWASVIALGLDAVPAIDLERLP----------LRPMAAVTETLNEQTREVFASE 910

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD-NQTFNRGLIIHKLLQV 792
                   ++L   + +  + P                E++ +       RG +IHKLL+ 
Sbjct: 911  AATVARHRRLTWIVPSRDDAPVPGFEDAGSEPLPVPTEAVSAPLQGGRERGTVIHKLLEE 970

Query: 793  IFTLPEHKRK--NFITSYCTKNAKLWPAK------EYKNLLLSITRLLENPMMTTAMSCD 844
            I T    +R        +   +   +         +  ++   + R L  P +       
Sbjct: 971  ILTGELDERDGLEARARFLAGHLGPYGEDGRPAALDPADIAACVARALALPQVAGI-RER 1029

Query: 845  SYSEVSVSGKINCPKKDIIISGRIDQISISQQNI--FIFEYKTHHHVPQEIEHIPYTHIA 902
              +EV V       +++   +G  D ++  ++     + ++K+     ++       + A
Sbjct: 1030 LRAEVPVYAYEALDEEERATAGVADALACDERGQPDVVVDWKSDVAPGKDA---LLDYRA 1086

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
            Q++ Y               L+++V++  V  +   
Sbjct: 1087 QVARYLAATGARL------GLIVFVTDGTVVSVTPA 1116


>gi|291570130|dbj|BAI92402.1| ATP-dependent DNA helicase PcrA [Arthrospira platensis NIES-39]
          Length = 779

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 110/556 (19%), Positives = 184/556 (33%), Gaps = 99/556 (17%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + + Y++A   N  LDF+DLI+    L  + +    +     Q+  HIL+DE QD
Sbjct: 205 RVIAEVYSLYQDALAANNALDFDDLILVPVALFSQNE---QVLAYWHQKFCHILVDEYQD 261

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++IR LT +     +  +   R++F VGD  QSIYSF  A+ + +L  ++    
Sbjct: 262 TNRTQYDLIRLLTTNGEPPPSFHNWQNRSIFVVGDVDQSIYSFRMADYRIMLEFQQDFGD 321

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
              +   + ++I+L  ++RS  +IL V + +              T              
Sbjct: 322 GLADDDSR-TLIKLEENYRSRENILEVANHLIQNNTTRIDKILRPTR------------- 367

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                      D + +       A  +   I  +I  +      
Sbjct: 368 ---------------SPGVPVCCHKADDEMAE-------AHFVVDQIRTIINQNP----- 400

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               I      +L R    +     + R     Y I           D   IKD ++  R
Sbjct: 401 ---EIGFGSFAILYRTNAQSRPFEDVLRREDVHYNI----VGGLKFYDRREIKDAISYLR 453

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN------CGIS 479
            I +  D +S   ++  P        I  +     +    ++E I    +          
Sbjct: 454 VIANPADTVSLQRVINVPRRGIGRTTIDGLNNAAQQLGVPLWEIISDQDSVNTITGRAAK 513

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536
                 + I       +  +  D    IL      Q    +  +E     D L E  N  
Sbjct: 514 SVNRFAQMIQSWRDRLETTTALDILDGILEDSGYFQDLKQQGTDEADNRLDNLRELCNAV 573

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            +  E+   +SLQ  ++                   V +MT+H+AKGLE P+VFLV    
Sbjct: 574 SQFQEEEEDTSLQAFLARASLSSDLDN--LQEGQEAVSLMTLHSAKGLEFPIVFLVGLEQ 631

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F +       +                                    EE  RL YVG+
Sbjct: 632 GLFPNFRSINDPLS----------------------------------LEEERRLCYVGI 657

Query: 656 TRASDQLIICKHSNTS 671
           TRA +QL I   S   
Sbjct: 658 TRAQEQLFITHTSERR 673


>gi|238855395|ref|ZP_04645706.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3]
 gi|260665364|ref|ZP_05866212.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US]
 gi|282932094|ref|ZP_06337551.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
 gi|313473070|ref|ZP_07813554.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153]
 gi|238831993|gb|EEQ24319.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3]
 gi|239528703|gb|EEQ67704.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153]
 gi|260560868|gb|EEX26844.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US]
 gi|281303773|gb|EFA95918.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
          Length = 754

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/724 (16%), Positives = 227/724 (31%), Gaps = 134/724 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEMKERVQKLLGPAGQDVWMST 89

Query: 66  FSLLSSFFLTQKFTP---QKNIITQEINKK---SPDLKEKL---------KKSQDEFIKI 110
           F  L    L +        +N    + +++      +++ L         +         
Sbjct: 90  FHALCVRILRRDADKIGYSRNFSIADSSEQVTLIKHIEKDLNINPKQYNPRAILSAISNA 149

Query: 111 RDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++     K F++         +   +   Y++   ++ ++DF+DLI+ T  L +K   + 
Sbjct: 150 KNDLLNPKDFEAASGNRPFDQIVSEIYKEYQKRLGQDQIMDFDDLIMQTLVLFQKDKAT- 208

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
              +    +  ++L+DE QDT+  Q+++ R L   +            +  VGD  QSIY
Sbjct: 209 --LHYYQNKFRYLLVDEYQDTNEAQYQLCRLLAAQYS----------NVCVVGDGDQSIY 256

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA  + +L  ++  + +          ++L  ++RST  IL+  + V    +N +  
Sbjct: 257 GWRGANMENILNFEKDYKDK------GVHTVKLEQNYRSTGHILSAANAVIKNNQNRKSK 310

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW       D     +   + +  D           A 
Sbjct: 311 R---------------------LW------TDQGSGEKITYYRAQSD--------VDEAI 335

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I+  +                KD  +L R    +               I     
Sbjct: 336 FVISKITEAVKAGKR---------DYKDFAILYRTNAQSRGFEESL----VKSNIPYQIV 382

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETV 466
                 D   IKD++A  + + +  D +SF  ++  P        + K +         V
Sbjct: 383 GGHKFYDRKEIKDILAYLKLVANTSDSMSFNRIVNVPKRGIGAATVDKLLTFANERGIGV 442

Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFIS 519
            + +              K       + + +  AQ    +       IL           
Sbjct: 443 GDALSNLELVPVSAAASKKLADFNAKLVDCVAYAQDTSHTVTGLTEKILEDFGYTDALKK 502

Query: 520 RFGNE---VIDVLDEFLNFTLR----NEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
               E    ++ LDEFL  T R     E +   SL       E    + +     + N+V
Sbjct: 503 EKTLESASRLENLDEFLTVTKRFDDNFEADDDESLPINDFLSEVTLLSDQDDIEDDGNQV 562

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFLV     +F                                  
Sbjct: 563 TLMTLHAAKGLEFPVVFLVGMEDGIFPLS------------------------------- 591

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                 L++   EE  RL YVG+TRA ++L +    + +   K+        V +    D
Sbjct: 592 ---RAMLEEDQLEEERRLAYVGITRAREKLYLTNAFSRTMYGKTTSNPASRFVQEIKPED 648

Query: 693 ERVK 696
              +
Sbjct: 649 LETE 652


>gi|218248831|ref|YP_002374202.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801]
 gi|218169309|gb|ACK68046.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801]
          Length = 781

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 114/603 (18%), Positives = 197/603 (32%), Gaps = 103/603 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEE 139
           KNI+T+++N        +    + +    ++   +   +     S    +   +   Y+ 
Sbjct: 164 KNIVTKQLNLDDKKFDPR--SVRYQISNAKNLGLSPDQYLQKNPSYKSRVIAEVYNEYQS 221

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
               N  LDF+DLI+    L ++ +    I      +  HIL+DE QDT+ IQ+E+IR L
Sbjct: 222 QLAANNALDFDDLILIPVRLFQQNES---ILGYWHSQFKHILVDEYQDTNQIQYELIRLL 278

Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
             +    K+  +   R++F VGD  QSIYSF  A+   +L  +        +   + +++
Sbjct: 279 ATNGETKKSEWNWQNRSIFVVGDADQSIYSFRMADFTILLNFQSDFGDGLPDDDTR-TMV 337

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RS  +IL   + +              T                          
Sbjct: 338 KLEENYRSRENILEAANHLIENNSQRIDKILKPTR------------------------- 372

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                      +  F    +     I A+ +   I  ++  +          +      +
Sbjct: 373 ----------GSGDFIYCYKADDEQIEAQLVIEHIQKLVRENP--------ELNWGSFAI 414

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +               I       F   D   IKD +A  R I +  D +S +
Sbjct: 415 LYRINAQSRPFEDRL----IMNSIPYNIVGGFKFYDRQEIKDAIAYLRLIANPSDTVSLL 470

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQK------FANCGISKFQHVIKYIHEL 491
            ++ +P  +  +  I  +     E E  ++E I         A           + I   
Sbjct: 471 RIINTPRRSIGKTSIESLLKAAQELEIPLWEIISDETSVNTLAGRAAKSVNKFAQMIKSF 530

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQNSYSSL 547
                  S  +    ++ A         +   E       + E  N  L+  E +   SL
Sbjct: 531 QEQLDSLSGAEILNQVMEASGYVDDLKQKGTEEADNRLANIFELYNAVLQFQEDSEDQSL 590

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           Q  +S                  +V +MT+H+AKGLE PVVFLV     +  H       
Sbjct: 591 QGFLSNASLASDLD--DLKEGQEKVSLMTLHSAKGLEFPVVFLVGLEEGLLPHARSVSDP 648

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           +                                    EE  RL YVG+TRA +QL +   
Sbjct: 649 LS----------------------------------LEEERRLCYVGVTRAQEQLFLTYA 674

Query: 668 SNT 670
              
Sbjct: 675 RER 677


>gi|322391967|ref|ZP_08065431.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780]
 gi|321145193|gb|EFX40590.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780]
          Length = 763

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 101/589 (17%), Positives = 188/589 (31%), Gaps = 118/589 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QDT
Sbjct: 167 IVAKCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQDT 223

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++      
Sbjct: 224 NHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP--- 270

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   ++ L  ++RST  IL   + V    +N +  +                    
Sbjct: 271 -----DAKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN-------------------- 305

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW           + +Q  +    D   +       A  +A TI  +         G+ 
Sbjct: 306 -LW-------TQNADGEQIVYYRANDEQDE-------AVFVAKTIDEL---------GRA 341

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                KD  VL R    +  I            I               I+D++A    I
Sbjct: 342 HNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNLI 397

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKFQ 482
            +  D++S   ++  P        + KI      +  ++ +                   
Sbjct: 398 ANLSDNISLERIINEPKRGIGPGTVEKIRDFANMQEMSMLDASANIMLSGIKGKVAQSIW 457

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
                I +L          +    +L          ++   E    ++ ++EFL+ T   
Sbjct: 458 DFANMILDLREQLDQLKITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKNF 517

Query: 540 E-----QNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDT 593
           +     Q   + L +L   L            S   +EV +MT+H AKGLE PVVF++  
Sbjct: 518 DDNPESQEGETGLDKLSRFLNDLALIADTDSGSQETSEVTLMTLHAAKGLEFPVVFIIGM 577

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF                                              EE  RL YV
Sbjct: 578 EENVFPLS----------------------------------RAAEDMDELEEERRLAYV 603

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           G+TRA   L +   ++     +++       + +   +    + +    
Sbjct: 604 GITRAEKILYLTNANSRLLFGRTSYNRPTRFINEISSDLLTYQGLARPA 652


>gi|159030780|emb|CAO88458.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 773

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 111/603 (18%), Positives = 196/603 (32%), Gaps = 103/603 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139
           KNI+T+++N        +    +      ++   T   +          +   +   Y+ 
Sbjct: 160 KNIVTKQMNLDDKKFDAR--NLRYAISNAKNLGLTPGDYARENPHFRGKVISEVYQAYQM 217

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
              +N  LDF+DLI+    L ++ +    I      +  HIL+DE QDT+ IQ+E+IR L
Sbjct: 218 QLAQNNALDFDDLILVPVRLFQQNES---ILGYWHTQFKHILVDEYQDTNRIQYELIRLL 274

Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           + +    K+  + + R++F VGD  QSIYSF  A+   +L  +        +   + +++
Sbjct: 275 STNGETKKSEWNWTDRSIFVVGDADQSIYSFRMADFTILLNFQADFGDGLPDDDTR-TMV 333

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RS  +IL   +K+              T                          
Sbjct: 334 KLQENYRSRENILQAANKLIEKNSQRIDKVLVPTR------------------------- 368

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                 +        D   +       A  +   I             +   +      +
Sbjct: 369 ---EGGEIIYVFKARDEQEE-------AAFVIDKIRE--------FTQENPELNWGSFAI 410

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +               I       F   D   IKD +A  R I +  D +S +
Sbjct: 411 LYRINAQSRPFEDGL----IRNNIPYNIVGGFKFYDRQEIKDAIAYLRVIANPADTVSLL 466

Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGISKFQHVIKYIHEL 491
            ++ +P     +  I  +     E    ++E I         A         + K I  L
Sbjct: 467 RIINTPRRGIGKTTIDNLLKAAQELGVPLWEIISDETSVNTLAGRATKSINRLAKIIQNL 526

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQ 548
                  S  +    I+       +   +   E     + + E  +  ++ ++ +  +  
Sbjct: 527 QEKITDLSASEILDKIMEDSGYIDELKHQGTEEADTRIENIQELYSAVVQFQEENEET-- 584

Query: 549 ELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            L   L                 +V +MT+H+AKGLE P+VFLV     +F H       
Sbjct: 585 NLQEFLASASLASDLDNLQEGQEKVSLMTLHSAKGLEFPIVFLVGLEQGIFPHNRSLNDP 644

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           I                                    EE  RL YVG+TRA +QL +   
Sbjct: 645 I----------------------------------ALEEERRLCYVGVTRAKEQLFLTYA 670

Query: 668 SNT 670
              
Sbjct: 671 KER 673


>gi|154506234|ref|ZP_02042972.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC 29149]
 gi|153793733|gb|EDN76153.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC 29149]
          Length = 744

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 103/554 (18%), Positives = 180/554 (32%), Gaps = 118/554 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE+    N  LDF+DL++ T  L + +     +     +   +I++DE QDT+ 
Sbjct: 170 AKVYQEYEKQMHANNALDFDDLLVKTVQLFETQPD---VLENYQERFRYIMVDEYQDTNT 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++  L   +          R L  VGD+ QSIY F GA  K +L  ++        
Sbjct: 227 VQFQLVSLLAGKY----------RDLCVVGDDDQSIYKFRGANIKNILNFEQEFP----- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++I+L  ++RST +IL   + V S     +                       QL
Sbjct: 272 ---DATVIKLEQNYRSTGNILDAANAVISNNVGRKDK---------------------QL 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W             ++  +  +     +       A  IA  I   +             
Sbjct: 308 W-------TDNGEGEKIKFCQFDTGYDE-------AEYIADDIEREVRNG---------- 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  +L R    + L             I               IKD++A  + I +
Sbjct: 344 ASYNDHAILYRTNAQSRLFEERFVA----QNIPYKIVGGVNFYARREIKDVLAYLKTIDN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHV 484
            +DDL+   ++  P        I +I           Y+ +           G +K +  
Sbjct: 400 GKDDLAVRRIINVPKRGIGLTTINRIQESAASRGIGFYDALLGLDLIPGVARGAAKLEGF 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
           +  I     +A+  S  D    ++      +   +    E    I+ +DE  +     E 
Sbjct: 460 VALIEYFKGVAETLSLSDLLQEVIDKTGYIESLEAEGKEESETRIENIDELRSKVAVYEE 519

Query: 541 ----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               Q+   +L   + E+         +     + V +MT+H+AKGLE P V+L      
Sbjct: 520 SCLDQDEKPTLSGFLEEVALVADID--SLDEEQDYVVLMTLHSAKGLEFPHVYLAGMEDG 577

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F                                          +   EE  RL YVG+T
Sbjct: 578 LFPSYMTVTS--------------------------------DDREDMEEERRLCYVGIT 605

Query: 657 RASDQLIICKHSNT 670
           RA  +L +      
Sbjct: 606 RAEQKLTMTSAMRR 619


>gi|296876758|ref|ZP_06900806.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
           15912]
 gi|296432260|gb|EFH18059.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC
           15912]
          Length = 767

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/592 (16%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 172 QIVAKCYEAYQKELRQSEAVDFDDLIMLTLRLFDQHPD---VLTYYQQKFQYIHVDEYQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V     + +  +                   
Sbjct: 277 ------DAKVVLLEENYRSTKTILQAANDVIKNNRHRRPKN------------------- 311

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 312 --LW-------TQNEDGEEIVYYRANDEQDE-------AVFVAKTIEELSREA------- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + +D  VL R    +  I            I               I+D++A    
Sbjct: 349 --GYKHRDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVIAYLNL 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI    + +  ++ +                  
Sbjct: 403 IANLSDNISFERIINEPKRGIGPGTVDKIRDFAQMQEASLLDASANIMLSGIKGKAAQAI 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  +    +L          ++   E    I+ + EFL+ T  
Sbjct: 463 WDFANLILDLRERLDQLTITELVEEVLDKTGYMMALTNQGNLESQARIENIQEFLSVTKN 522

Query: 539 NEQNSY--------SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            ++N           +L   +++L     T     +   +EV +MT+H AKGLE PVVFL
Sbjct: 523 FDENGETVEDETGVETLSRFLNDLALIADTD--DGAQETSEVTLMTLHAAKGLEFPVVFL 580

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 581 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 606

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     +++       + +   +    + +    
Sbjct: 607 AYVGITRAEKVLFLTNANSRLLFGRTSYNRPTRFINEISSDLLTYQGLARPA 658


>gi|322375316|ref|ZP_08049829.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300]
 gi|321279579|gb|EFX56619.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300]
          Length = 763

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 192/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNADGEQIVYYRANDEQDE-------AVFVAKTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQEMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMILDLREKLDQLTITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVF+
Sbjct: 517 FDDNPDSQEEETGLDKLSHFLNDLALIADTDTGSQETSE--VTLMTLHAAKGLEFPVVFI 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     K+N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGKTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|270292792|ref|ZP_06199003.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143]
 gi|270278771|gb|EFA24617.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143]
          Length = 763

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 101/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST  IL   + V    +N +  +                   
Sbjct: 272 -------AKVILLEENYRSTKTILQAANDVIKNNQNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNADGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 TQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQDMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMILDLREQLDQLTITELVEAVLEKTGYIDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVF+
Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     +++       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTSYNRPTRFINEISSDLLDYQGLARPA 652


>gi|257061893|ref|YP_003139781.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802]
 gi|256592059|gb|ACV02946.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802]
          Length = 781

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 114/603 (18%), Positives = 197/603 (32%), Gaps = 103/603 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEE 139
           KNI+T+++N        +    + +    ++   +   +     S    +   +   Y+ 
Sbjct: 164 KNIVTKQLNLDDKKFDPR--SVRYQISNAKNLGLSPDQYLQKNPSYKSRVIAEVYNEYQS 221

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
               N  LDF+DLI+    L ++ +    I      +  HIL+DE QDT+ IQ+E+IR L
Sbjct: 222 QLAANNALDFDDLILIPVRLFQQNES---ILGYWHSQFKHILVDEYQDTNQIQYELIRLL 278

Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
             +    K+  +   R++F VGD  QSIYSF  A+   +L  +        +   + +++
Sbjct: 279 ATNGETKKSEWNWQNRSIFVVGDADQSIYSFRMADFTILLNFQSDFGDGLPDDDTR-TMV 337

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RS  +IL   + +              T                          
Sbjct: 338 KLEENYRSRENILEAANHLIENNSQRIDKILKPTR------------------------- 372

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                      +  F    +     I A+ +   I  ++  +          +      +
Sbjct: 373 ----------GSGDFIYCYKADDEQIEAQLVIEHIQKLVRENP--------ELNWGSFAI 414

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +               I       F   D   IKD +A  R I +  D +S +
Sbjct: 415 LYRINAQSRPFEDRL----IMNSIPYNIVGGFKFYDRQEIKDAIAYLRLIANPSDTVSLL 470

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQK------FANCGISKFQHVIKYIHEL 491
            ++ +P  +  +  I  +     E E  ++E I         A           + I   
Sbjct: 471 RIINTPRRSIGKTSIDSLLKAAQELEIPLWEIISDETSVNTLAGRAAKSVNKFAQMIKSF 530

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQNSYSSL 547
                  S  +    ++ A         +   E       + E  N  L+  E +   SL
Sbjct: 531 QEQLDSLSGAEILNQVMEASGYVDDLKQKGTEEADNRLANIFELYNAVLQFQEDSEDQSL 590

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           Q  +S                  +V +MT+H+AKGLE PVVFLV     +  H       
Sbjct: 591 QGFLSNASLASDLD--DLKEGQEKVSLMTLHSAKGLEFPVVFLVGLEEGLLPHARSVSDP 648

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           +                                    EE  RL YVG+TRA +QL +   
Sbjct: 649 LS----------------------------------LEEERRLCYVGVTRAQEQLFLTYA 674

Query: 668 SNT 670
              
Sbjct: 675 RER 677


>gi|307709461|ref|ZP_07645918.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564]
 gi|307619775|gb|EFN98894.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564]
          Length = 763

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 104/592 (17%), Positives = 194/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNADGEQIVYYRANDELDE-------AVFVAKTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANVQDMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       S  +    +L           +   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMILDLREQLDQLSITELVEEVLEKTGYIDILNVQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTSDVPEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                          +   EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDQDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|166367339|ref|YP_001659612.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843]
 gi|166089712|dbj|BAG04420.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843]
          Length = 773

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 111/603 (18%), Positives = 196/603 (32%), Gaps = 103/603 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139
           KNI+T+++N        +    +      ++   T   +          +   +   Y+ 
Sbjct: 160 KNIVTKQMNLDDKKFDAR--NLRYAISNAKNLGLTPTDYARENPHFRGKVISEVYQAYQM 217

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
              +N  LDF+DLI+    L ++ +    I      +  HIL+DE QDT+ IQ+E+IR L
Sbjct: 218 QLAQNNALDFDDLILVPVRLFQQNES---ILGYWHTQFKHILVDEYQDTNRIQYELIRLL 274

Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           + +    K+  + + R++F VGD  QSIYSF  A+   +L  +        +   + +++
Sbjct: 275 STNGETKKSEWNWTDRSIFVVGDADQSIYSFRMADFTILLNFQADFGDGLPDDDTR-TMV 333

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RS  +IL   +K+              T                          
Sbjct: 334 KLQENYRSRENILQAANKLIEKNSQRIDKVLVPTR------------------------- 368

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                 +        D   +       A  +   I             +   +      +
Sbjct: 369 ---EGGESIYVFKARDEQEE-------AAFVIDKIRE--------FTQENPELTWGSFAI 410

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +               I       F   D   IKD +A  R I +  D +S +
Sbjct: 411 LYRINAQSRPFEDGL----IRNNIPYNIVGGFKFYDRQEIKDAIAYLRVIANPADTVSLL 466

Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGISKFQHVIKYIHEL 491
            ++ +P     +  I  +     E    ++E I         A         + K I  L
Sbjct: 467 RIINTPRRGIGKTTIDNLLKAAQELGVPLWEIISDETSVNTLAGRATKSINKLAKIIQNL 526

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQ 548
                  S  +    I+       +   +   E     + + E  +  ++ ++ +  +  
Sbjct: 527 QEKITDLSASEILDQIMEDSGYIDELKQQGTEEADTRIENIQELYSAVVQFQEENEET-- 584

Query: 549 ELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            L   L                 +V +MT+H+AKGLE P+VFLV     +F H       
Sbjct: 585 NLQEFLASASLASDLDNLQEGQEKVSLMTLHSAKGLEFPIVFLVGLEQGIFPHNRSLNDP 644

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           I                                    EE  RL YVG+TRA +QL +   
Sbjct: 645 I----------------------------------ALEEERRLCYVGVTRAKEQLFLTYA 670

Query: 668 SNT 670
              
Sbjct: 671 KER 673


>gi|3024353|sp|P56255|PCRA_BACST RecName: Full=ATP-dependent DNA helicase pcrA
 gi|4930230|pdb|3PJR|A Chain A, Helicase Substrate Complex
 gi|15988533|pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
 gi|157833507|pdb|1PJR|A Chain A, Structure Of Dna Helicase
          Length = 724

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 117/695 (16%), Positives = 225/695 (32%), Gaps = 137/695 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++ Q+L   +        
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWIST 91

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +  +  + I+ K  + +  L      
Sbjct: 92  FHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K  +++     +   +   Y++   +N  LDF+DLI+ T  L  +    
Sbjct: 152 KNELLPPEQFAK--RASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDR---V 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             + +    +  +I IDE QDT+  Q+ +++ L E F          + + AVGD  QSI
Sbjct: 207 PDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +R              +I L  ++RST  IL   ++V     N + 
Sbjct: 257 YRWRGADIQNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                                 +   +    +   +       A
Sbjct: 309 KRIW----------------------------TENPEGKPILYYEAMNEADE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +A  I   +              + +D  VL R    + ++  +         I    
Sbjct: 334 QFVAGRIREAVERGER---------RYRDFAVLYRTNAQSRVMEEML----LKANIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I + +DDLS + ++  P        I K+         +
Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELS 440

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++E + +                    + +   + ++ S  +    +L     R+   + 
Sbjct: 441 LFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVR 573
              E     + LDEFL+ T   E  +   SL   +++L              +A  + V 
Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELDGTEQAAEGDAVM 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFL+     +F H    +                            
Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEE-------------------- 600

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                          RL YVG+TRA ++L++    
Sbjct: 601 --------------RRLAYVGITRAEEELVLTSAQ 621


>gi|312622478|ref|YP_004024091.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202945|gb|ADQ46272.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 714

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 182/550 (33%), Gaps = 114/550 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +  K+    DF+DL+  T  L +       I  K   +  +IL+DE QDT+  
Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNHA 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +  L++            R +  VGD+ QSIYSF GA  K +L  +++        
Sbjct: 226 QFYFVYLLSQ----------KHRNICVVGDDDQSIYSFRGANIKNILEFEKVF------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RST  IL+  ++V       +                        LW
Sbjct: 269 -SDAKVIKLEKNYRSTKTILSAANEVIKNNNYRKFKK---------------------LW 306

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + ++    S FD + +       A  +A ++ N+I +           I
Sbjct: 307 -------TDNIDGEKIFLYSAFDEVNE-------AEFVASSVKNLIESG----------I 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VL R    +             Y +           +   IKD++A  R I + 
Sbjct: 343 SPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISKFQHVI 485
            DDLS   ++  P        I K+     E      T  +      F      +    I
Sbjct: 399 HDDLSLFRIINVPRRGIGNSTIEKVKVLSEEYNVSAYTILLERAKFNFDKKTYERLNGFI 458

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             I +L   A+  S      L+L      +  +S    E       +++ ++     E+ 
Sbjct: 459 SLIEDLKAEAENLSVSAAIKLVLEKTGYLESLLSSKSEEEFQRAKNIEQLISTAAIFEEE 518

Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +LQ  ++ +                +V +MTVH AKGLE  VVFL      +F   
Sbjct: 519 NEEPTLQNFLNSITLSSEDEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFPLV 575

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             ++        ++                                    YV +TRA   
Sbjct: 576 RAEEPIDAEKELEEERRL-------------------------------CYVAITRAKKL 604

Query: 662 LIICKHSNTS 671
           L++   +N  
Sbjct: 605 LVLTYANNRR 614


>gi|322376782|ref|ZP_08051275.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334]
 gi|321282589|gb|EFX59596.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334]
          Length = 763

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 105/592 (17%), Positives = 194/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNADGEQIVYYRANDELDE-------AVFVARTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEESL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQDMSMLDASANIMLSGIKGKVAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMILDLREQLDHLSITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +H  +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTSDVSEEETGLDKLSRFLNDLALIADTDSGSHETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +        + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSELLEYQGLARPA 652


>gi|39935284|ref|NP_947560.1| ATP-dependent exodeoxyribonuclease subunit A [Rhodopseudomonas
            palustris CGA009]
 gi|39649136|emb|CAE27656.1| possible ATP-dependent exodeoxyribonuclease (subunit A)
            [Rhodopseudomonas palustris CGA009]
          Length = 1133

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 157/938 (16%), Positives = 304/938 (32%), Gaps = 91/938 (9%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
               +      +    +         ++  ++    +  +++    L +   TQ   +  +
Sbjct: 218  HAVDGLMEFIRTAPAVEEETAMLAERFAGMAAGLDSGPVIETPVGLVRLLVTQPHPDLCT 277

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPD--LKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               SF   +K         +E   K+    L            +           +    
Sbjct: 278  KTGSFLAYKKKGKWVEAAKREGLAKTEGERLNIAADAHYAACCQAWQDLVQNVASRVLCD 337

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             +   + + A + + K+    LDF+DLI    DLL+  D    +R  +     H+L+DE 
Sbjct: 338  LIAQVQPVLARFRDYKRSAAQLDFDDLIFAARDLLRDHDD---VRRSLATRFAHVLVDEF 394

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHS------SPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            QDT  +Q E+   L  +   G  +         P  LF VGD KQ+IY F GA+    +R
Sbjct: 395  QDTDPLQTEIFWRLCGEPPAGVASADWSAFTIRPGALFLVGDPKQAIYRFRGADVSAYVR 454

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +     +   +     ++ +  +FRS A ILT V+  F                     
Sbjct: 455  ARDAYLAQDPES-----VLAISTNFRSCAPILTYVNDRFEAL-----------------L 492

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIG 358
            S  GQ G   L      + ++ C    +   +  +     E      A  IA   + +IG
Sbjct: 493  SSEGQPGFTALDPFHADRGEALCVAALDVAVADENGKASAEQQRDGEADAIAQMCARLIG 552

Query: 359  TDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
             + I    +G  R  +  DI +L     D              + I V       L    
Sbjct: 553  GEMILDRRSGASRPCRPGDIALLAPTGSDLWRYEEALE----RHGIPVATQAGKGLFRRQ 608

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY------I 470
             I+DL+AL R +  + D L+   +L+ PL   +E+++  I       E   E        
Sbjct: 609  EIQDLIALTRVLADRRDTLALGALLRGPLVGLTEEELLDIIWALPRAEDDPERLPRLDLG 668

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--- 527
             +  +      +  I+ +  L       +PHD  +  + A + R   + R   +      
Sbjct: 669  VELEHIAHPLARSTIETLQALYRQTNSTTPHDLLSQAIDALRVRPILLERHRGQAERALA 728

Query: 528  VLDEFLNFTLRNEQNSYSSLQE-LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             +D +L+ T         +  E + +        ++    A    V + T+H AKGLE P
Sbjct: 729  NVDLYLSLTTSFAVRGLRAFAETMTAAWTDEARAVEGRPDAQEEAVALYTMHAAKGLEWP 788

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V  ++T + + + +          + D      + P    +           K     E
Sbjct: 789  IVVPINTMTGIMAPESA--------VTDRDSDTFYCPVFGVKPVGYDAARDAEKAELDRE 840

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RL YV  TRA + L++         +    ++    +     +   +  + L++   +
Sbjct: 841  RIRLWYVAATRARELLVLP--------RLDAAQSKSAWISLLDLSLAELPALDLSHLPPE 892

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +  A   +     +       +I              +P +++  +  +L P   +   
Sbjct: 893  LDLAAGGEANDQTRDDFAAEAASIVARQRRL----IWLAPSRDESADGPVLTPEAAEIWA 948

Query: 767  KTNLESLLSD------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
             +       +           RGLI+HKLL+ + T         ++              
Sbjct: 949  ASEAGQPDDEAVRPNVQGGRERGLILHKLLEEVLTGETPDDAGALSERARALIGEIGRPV 1008

Query: 821  Y---------KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ- 870
                        L   + R L  P +          E++V   ++    +    G  D  
Sbjct: 1009 MADPSQGLSPDELAGCVVRTLALPEIAEL-RPTLVPELAVYAAVDVDGVEQATVGIADAT 1067

Query: 871  -ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
               I+ +   + ++K+              + AQ+  Y
Sbjct: 1068 SFDIAGKPTVVIDWKSDVQPT---AETLNHYRAQVRAY 1102


>gi|75909567|ref|YP_323863.1| ATP-dependent DNA helicase Rep [Anabaena variabilis ATCC 29413]
 gi|75703292|gb|ABA22968.1| ATP-dependent DNA helicase, Rep family [Anabaena variabilis ATCC
           29413]
          Length = 772

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 206/618 (33%), Gaps = 103/618 (16%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139
           K I+T+++N      + +    +      +++  + + F+    +    +   +   Y++
Sbjct: 158 KEIVTKQLNLDDKKFEPR--SVRYAISNAKNQGLSPQEFEKDQPNYRGRVIADVYNRYQD 215

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
              +N  LDF+DLI+    L ++ +    +     ++  HIL+DE QDT+  Q+++IR L
Sbjct: 216 KLAENNALDFDDLILIPTRLFQQNE---QVLGYWHRKFCHILVDEYQDTNRTQYDLIRLL 272

Query: 200 TEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           T +    K+      R++F VGD  QSIYSF  A+   +L  +        +   + +++
Sbjct: 273 TTNGEERKSAWEWQNRSVFVVGDADQSIYSFRMADFTILLEFQNQFGDGLPDEDTR-TMV 331

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RS  +IL V +++             +T                          
Sbjct: 332 KLEENYRSCENILQVANELIENNTQRIDKVLKATR------------------------- 366

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                 ++       + L +       A  +   I  +          +   +      +
Sbjct: 367 ---GAGEEIYCHKADNELEE-------ADFVIRQIRTL--------EHQNPELDWGSFAI 408

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +         L    +I           D   IKD++A  R I +  D +S +
Sbjct: 409 LYRTNAQSRPFEE----LLVRNQIPYTVVGGMKFYDRKEIKDVIAYLRAIANPSDTVSLL 464

Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYIHEL 491
            ++ +P     +  I  +     +   T++E       +   A        H  + I+  
Sbjct: 465 RVINTPRRGIGKATIDNLINASQQLGTTLWEILSDETSVNTLAGRSAKGVNHFAQMINRW 524

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRN-EQNSYSSL 547
                     +    IL      Q   ++  +E  D    + E  N  L+  E+N   SL
Sbjct: 525 QEQITTAPVTEIVMGILEDSGYVQDLQNQGTDESEDRIQNVQELYNAVLQFQEENEDVSL 584

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +                    V +MT+H +KGLE PVVFLV     +F         
Sbjct: 585 TAFLQSTALSSDLDN--LKEGQTAVSLMTLHASKGLEFPVVFLVGLEQGLFPGYRSLNDP 642

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                             +  EE  RL YVG+TRA ++L +   
Sbjct: 643 ----------------------------------AALEEERRLCYVGITRAQERLYLSFA 668

Query: 668 SNTSNEKKSNQRTWYDMV 685
                            +
Sbjct: 669 RERRLYGSREPAMRSQFL 686


>gi|300361106|ref|ZP_07057283.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03]
 gi|300353725|gb|EFJ69596.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03]
          Length = 757

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 131/760 (17%), Positives = 232/760 (30%), Gaps = 135/760 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 40  GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 99

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110
           F  L    L +            I   +  L    +  +D                    
Sbjct: 100 FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 159

Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T K F  ++      +   + A Y+   K++ ++DF+DLI+ T  L KK      
Sbjct: 160 KNDLLTPKDFKEQAASPFEKVTAQVYAEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 216

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
             +    +  +IL+DE QDT+  Q+++  +L   +          + +  VGD  QSIY 
Sbjct: 217 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 266

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   Q        + + I+L  ++RST  IL   + V    +N +   
Sbjct: 267 WRGANMENILNFEHDYQDD------EVNTIKLEQNYRSTGHILDAANSVIKNNQNRKPKK 320

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         + +  + ++            A  +  +
Sbjct: 321 ---------------------LW-------TDKGDGDKINYYRA---QSGNDEALFIVSK 349

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I                    KD  VL R    +  +            I      
Sbjct: 350 INEEIKEHHRD-------------YKDFAVLYRTNAQSRNVEEAL----VKSNIPYRIVG 392

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKD++A  + + +  D +SF  ++  P        + K     ++ +   E
Sbjct: 393 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 452

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              K                     + + I  ++  S       +L     ++   +   
Sbjct: 453 ETFKNLSLAPITGRPAKTLAIFGTALKDAIEYSKTHSVTGLTEKLLADFGYKEALENEHT 512

Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E     + L+EFL  T R       E    ++L + +SE+               N+V 
Sbjct: 513 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 570

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 571 LMTLHAAKGLEFPVVFLVGMEEGLFPLS-------------------------------- 598

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   S  EE  RL YVG+TRA  +L I    + +   +         + +    D 
Sbjct: 599 --RAASDPSELEEERRLAYVGITRAEKKLYITNAFSRTMYGRPQNNQPSRFIDEIEDKDL 656

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
                  +NS     +             P  R ET K+ 
Sbjct: 657 EFVNPVQSNSSMSIPFAKSSERATSQVYRPKTRIETAKKA 696


>gi|319745133|gb|EFV97457.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae ATCC
           13813]
          Length = 766

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 122/774 (15%), Positives = 242/774 (31%), Gaps = 139/774 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61
           G    ++  L ++  + +    V+  N             + ++A  L  A+Q       
Sbjct: 35  GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 94

Query: 62  ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107
                     E  +   +  F       Q+ ++ + I + + D      +  L    +  
Sbjct: 95  HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 154

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D     K          +       Y+E  +++  +DF+DLI+ T  L  +     
Sbjct: 155 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 209

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 210 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 259

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++   +          ++ L  ++RST  IL   + V +  +N +  
Sbjct: 260 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 311

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW             +Q  +    +   +       A 
Sbjct: 312 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 336

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TI N++                KD  VL R    +  I            I     
Sbjct: 337 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 383

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     I+D++A    + +  D++SF  ++  P        + KI      +  ++
Sbjct: 384 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQNMSL 443

Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                    +   I  L       +  +    +L      +    + 
Sbjct: 444 LDASSNVMMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 503

Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571
             E    I+ ++EFL+ T   +          + L  L   L +          +    E
Sbjct: 504 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 563

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     VF                                 
Sbjct: 564 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 593

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA   L +   +  +   K++       + +    
Sbjct: 594 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 649

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             + + +    + +     + E  T   +   L++    ++   + ++  +L +
Sbjct: 650 LIQYQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQPQVTAQLQA 703


>gi|153854122|ref|ZP_01995430.1| hypothetical protein DORLON_01421 [Dorea longicatena DSM 13814]
 gi|149753171|gb|EDM63102.1| hypothetical protein DORLON_01421 [Dorea longicatena DSM 13814]
          Length = 682

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 118/664 (17%), Positives = 207/664 (31%), Gaps = 118/664 (17%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L     +          Y+M      S      +   YE+  + N  LDF+DL+  T  
Sbjct: 72  ALLSEISKAKDELVTPQEYRMRAEGDYSRKKIAEVYEEYEKQLRSNNALDFDDLLFKTVQ 131

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           L +       +     +   +I++DE QDT+ +Q+E+I  L   +          R L  
Sbjct: 132 LFQT---QKDVLEYYQERFRYIMVDEYQDTNTVQFELIHLLASKY----------RNLCV 178

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD+ QSIY F GA  K +L  + +             +I+L  ++RST +IL   + V 
Sbjct: 179 VGDDDQSIYKFRGANIKNILDFEHVFD--------DTKVIKLEQNYRSTGNILNAANAVI 230

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                 +  +                     LW           +     +  +      
Sbjct: 231 RNNHGRKEKT---------------------LW-------TENEDGNMIQFRQF------ 256

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             SA   A  +A  I   +  +         +   KD  VL R    + +          
Sbjct: 257 -DSAYEEAEYVAGDIRRHVNKE---------LCSYKDNAVLYRTNAQSRMFEERF----V 302

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457
              I               IKDL+A  + I +  DDL+   ++  P        I ++  
Sbjct: 303 RDSIPYKVIGGVNFYARREIKDLLAYLKTIDNGRDDLAVRRIVNVPKRGIGLTSINRVQE 362

Query: 458 TQRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                  + Y+ ++          G +K +  +  I    +  Q  S  +    ++    
Sbjct: 363 YASSRECSFYDALRAVDLIPNIGRGQAKLESFVAMIEHFKNDVQDMSVSELMEEVIKETG 422

Query: 513 GRQQFISRFGNE----VIDVLDEFLNFTLRNE-----QNSYSSLQELISELEQYPPTIKR 563
                I    +E     I+ +DE  N     E     QN  S+L   + ++         
Sbjct: 423 YIDALIHECESEEATSRIENIDELRNKIAAYEENCETQNEASTLSGFLEDVALVADID-- 480

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
           +   + + V +MT+H+AKGLE P V+L      +F                         
Sbjct: 481 SLDESTDYVVLMTLHSAKGLEFPHVYLAGMEDGLFPSYMT-------------------- 520

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                       I     +  EE  RL YVG+TRA   L +          ++  +    
Sbjct: 521 ------------ITADDPAELEEERRLCYVGITRAEKDLTLTCARKRMVHGETQYKKMSR 568

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
            + +                  + E +  + S    +     +  T  + + +   PK  
Sbjct: 569 FLKEIPLELLETGPSTKKEKKEESEPVRVKTSFMQAKEAFKTKAFTAPKPVQQFGTPKGG 628

Query: 744 FSPI 747
             P 
Sbjct: 629 KLPY 632


>gi|222529276|ref|YP_002573158.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456123|gb|ACM60385.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
          Length = 714

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 180/550 (32%), Gaps = 114/550 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +  K+    DF+DL+  T  L +       I  K   +  +IL+DE QDT+  
Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNRA 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  I  L++            R +  VGD+ QSIYSF GA  K +L  +++        
Sbjct: 226 QFYFIYLLSQ----------KHRNVCVVGDDDQSIYSFRGANIKNILEFEKVF------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RST  IL+  ++V       +                        LW
Sbjct: 269 -SDAKVIKLEKNYRSTKIILSAANEVIKNNNYRKFKK---------------------LW 306

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + ++    S FD + +       A  +A ++ N+I +           I
Sbjct: 307 -------TDNIDGEKIFLYSAFDEVNE-------AEFVASSVKNLIESG----------I 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VL R    +             Y +           +   IKD++A  R I + 
Sbjct: 343 SPSEIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE------TVYEYIQKFANCGISKFQHVI 485
            DDLS   ++  P        + KI     E         +      F      K     
Sbjct: 399 HDDLSLFRIINVPRRGIGNSTLEKIKVLSEEYGVSAYTVLLERAKIDFDKKIYEKLNRFT 458

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             I +L   A+  S      L+L      +  +S    E       +++ ++     E+ 
Sbjct: 459 LLIEDLKAEAENLSVTQTIKLVLDKTGYLESLLSSKSEEEFQRAKNIEQLISTAAIFEEE 518

Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +LQ  ++ +                +V +MTVH AKGLE  VVFL      +F   
Sbjct: 519 NEEPTLQNFLNSITLSSEDEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFPLV 575

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             ++        ++                                    YV +TRA   
Sbjct: 576 RAEEPIDAEKELEEERRL-------------------------------CYVAITRAKKL 604

Query: 662 LIICKHSNTS 671
           L++   +N  
Sbjct: 605 LVLTYANNRR 614


>gi|289168033|ref|YP_003446302.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6]
 gi|288907600|emb|CBJ22437.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6]
          Length = 763

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 194/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNADGEQIVYYRANDELDE-------AVFVARTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQKFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQDMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDQLTITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTSDGPEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|302519556|ref|ZP_07271898.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
 gi|302428451|gb|EFL00267.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
          Length = 829

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 122/756 (16%), Positives = 237/756 (31%), Gaps = 129/756 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P       S  +      +   +  +         +       +  
Sbjct: 130 AAGEMKERVEQLVGPRAGAMWVSTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 184

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +    K  +LK +L  +        + +      ++  A 
Sbjct: 185 RLMALVCRDLDLDP-KRFPPKSFTAKISNLKNELIDA--------EAYADEVAGEAAGAF 235

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   ++   LDF+D+I+ T  LL+       +     +   H+L+DE Q
Sbjct: 236 EKTLSQAYTMYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 292

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS----PRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DT+  Q+ +++ L      G          P  L  VGD  QSIY+F GA  + +L+ + 
Sbjct: 293 DTNHAQYTLVKELVGPSDGGTGYDGGPAPEPAELCVVGDADQSIYAFRGATIRNILQFEE 352

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                          I L  ++RST  IL+  + V    EN +  +              
Sbjct: 353 DYPN--------AKTILLEQNYRSTQTILSAANAVIERNENRRPKN-------------- 390

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  LW       ++   P+   + +  +           A+ +A  I  +      
Sbjct: 391 -------LW------TEAGNGPKITGYVADTEHDE--------AQFVADEIDRLTDAG-- 427

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    +  D+ V  R    + +   +         +           +   ++D++
Sbjct: 428 -------DAKPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERREVRDVL 476

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FAN 475
           A  R + + ED +    +L  P     E     I    + E  T  + +Q+       A 
Sbjct: 477 AYLRVLANPEDSVPLRRILNVPKRGIGERSEAMIDALSQRERITFPQALQRVDEAYGMAA 536

Query: 476 CGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
              +  +     + EL  I +  + P      +L       +  +    +    I+ L E
Sbjct: 537 RSANAIKRFNTLMEELRTIVESGAGPAVVLEAVLEQTGYLAELQASTDPQDETRIENLQE 596

Query: 532 FLNFTLRNEQNSYS-----SLQELISELEQYPPTIKRAHSANHNEV-RIMTVHTAKGLES 585
             +  L  EQ         +L E + ++     + +     + + V  +MT+HTAKGLE 
Sbjct: 597 LASVALEFEQERSDEEGTGTLAEFLEKVALVADSDQIPDEEDGDGVITLMTLHTAKGLEF 656

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVFL      VF H                                       +    E
Sbjct: 657 PVVFLSGMEDGVFPHMRALG----------------------------------QVKELE 682

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YVG+TRA ++L + + +  S   +         + +   +    K+     +  
Sbjct: 683 EERRLAYVGITRARERLYLTRSTLRSAWGQPQYNPPSRFLEEIPADHLEWKRTGAAPAKV 742

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
                A   ++               +  +E+ +  
Sbjct: 743 AAGPAAGIAASLSSSRARRGAPAFATRRAEEKPVVA 778


>gi|318058788|ref|ZP_07977511.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actG]
 gi|318075472|ref|ZP_07982804.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actF]
          Length = 829

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 122/756 (16%), Positives = 237/756 (31%), Gaps = 129/756 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P       S  +      +   +  +         +       +  
Sbjct: 130 AAGEMKERVEQLVGPRAGAMWVSTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 184

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +    K  +LK +L  +        + +      ++  A 
Sbjct: 185 RLMALVCRDLDLDP-KRFPPKSFTAKISNLKNELIDA--------EAYADEVAGEAAGAF 235

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   ++   LDF+D+I+ T  LL+       +     +   H+L+DE Q
Sbjct: 236 EKTLSQAYTMYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 292

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS----PRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DT+  Q+ +++ L      G          P  L  VGD  QSIY+F GA  + +L+ + 
Sbjct: 293 DTNHAQYTLVKELVGPSDGGTGYDGGPAPEPAELCVVGDADQSIYAFRGATIRNILQFEE 352

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                          I L  ++RST  IL+  + V    EN +  +              
Sbjct: 353 DYPN--------AKTILLEQNYRSTQTILSAANAVIERNENRRPKN-------------- 390

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  LW       ++   P+   + +  +           A+ +A  I  +      
Sbjct: 391 -------LW------TEAGNGPKITGYVADTEHDE--------AQFVADEIDRLTDAG-- 427

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    +  D+ V  R    + +   +         +           +   ++D++
Sbjct: 428 -------DAKPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERREVRDVL 476

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FAN 475
           A  R + + ED +    +L  P     E     I    + E  T  + +Q+       A 
Sbjct: 477 AYLRVLANPEDSVPLRRILNVPKRGIGERSEAMIDALSQRERITFPQALQRVDEAYGMAA 536

Query: 476 CGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
              +  +     + EL  I +  + P      +L       +  +    +    I+ L E
Sbjct: 537 RSANAIKRFNTLMEELRTIVESGAGPAVVLEAVLEQTGYLAELQASTDPQDETRIENLQE 596

Query: 532 FLNFTLRNEQNSYS-----SLQELISELEQYPPTIKRAHSANHNEV-RIMTVHTAKGLES 585
             +  L  EQ         +L E + ++     + +     + + V  +MT+HTAKGLE 
Sbjct: 597 LASVALEFEQERSDEEGTGTLAEFLEKVALVADSDQIPDEEDGDGVITLMTLHTAKGLEF 656

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVFL      VF H                                       +    E
Sbjct: 657 PVVFLSGMEDGVFPHMRALG----------------------------------QVKELE 682

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YVG+TRA ++L + + +  S   +         + +   +    K+     +  
Sbjct: 683 EERRLAYVGITRARERLYLTRSTLRSAWGQPQYNPPSRFLEEIPADHLEWKRTGAAPAKV 742

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
                A   ++               +  +E+ +  
Sbjct: 743 AAGPAAGIAASLSSSRARRGAPAFATRRAEEKPVVA 778


>gi|307703485|ref|ZP_07640427.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
 gi|307622892|gb|EFO01887.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037]
          Length = 739

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 101/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPN- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNPDGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRGFANMQDMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMILDLREKLDQLTITELVEAVLEKTGYIDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVF+
Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLIEYQGLARPA 652


>gi|306829578|ref|ZP_07462768.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249]
 gi|304428664|gb|EFM31754.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249]
          Length = 763

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 101/592 (17%), Positives = 193/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNADGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQEMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       S  +    +L      +   ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMILDLREQLDQLSITELVEAVLEKTGYVEILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVF+
Sbjct: 517 FDDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFI 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     +++       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTSYNRPTRFINEISSDLLEYQGLARPA 652


>gi|320535504|ref|ZP_08035607.1| UvrD/REP helicase [Treponema phagedenis F0421]
 gi|320147643|gb|EFW39156.1| UvrD/REP helicase [Treponema phagedenis F0421]
          Length = 1138

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 152/941 (16%), Positives = 307/941 (32%), Gaps = 105/941 (11%)

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK-IRDRFNT 116
                  E    L   F+ +      N+   E             + ++     + + +  
Sbjct: 241  SGDDCAEYLHKLEQLFVIKGNLGGSNLAAAECRSIIK------NEIRERIYPKLLNSYAL 294

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                        L + + A Y + KK+   L++ D+ +   D+L        IR+   Q+
Sbjct: 295  LGHQADIEELFKLFEEIQAEYIQKKKETGTLNYGDVAMLARDVLLHYPD---IRHFYKQD 351

Query: 177  INHILIDEVQDTSLIQWEVIRSLTED-----FFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            I+ I+IDE QD +++Q E++  L E        +  +   S   LF VGDEKQSIY+F G
Sbjct: 352  ISAIMIDEFQDNNILQKELLYLLAERENWETPAIPASEELSEGKLFFVGDEKQSIYAFRG 411

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS------IPENAQ 285
            A+     +        +  A        L  ++R+   +L   +++FS        +   
Sbjct: 412  ADVAVFRQLSYDLHADSYRAKT-----SLDTNYRTETGLLDFFNRIFSLVFYSHRNKPDS 466

Query: 286  GLSEDSTTTIRHRSSRIGQVGT--------VQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            G+            +     G         V        Q         +      +   
Sbjct: 467  GIVPTFEAEFFPIGTARHTEGVEPKIELFGVDKHRLENYQRFEDTLDDLDDLDGSSEGSE 526

Query: 338  QE------SSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRKDTPLI 389
            +       +     A R++  I  +    T   +   K R  +  D  +L+R   +  + 
Sbjct: 527  EAGTTLYLTPREAEAFRLSKRIKELYEDKTPVRHKDEKARPCRWADFAILMRATTNQQIF 586

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                R       I      +  L     I D+ AL +  L   D  S+  +L+SP  +  
Sbjct: 587  ERFLRAE----GIPYRSVQQKGLFFDAPINDIYALLQLALLPSDRQSYAQVLRSPFVHLD 642

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
            +     I     E  +  +      +   ++F         + +  +  S  +  T +  
Sbjct: 643  DKSFTIIMLNNAEPFS-ADMDSLLEDEARNRFAQGRALYDRVQNYLKSYSNAELVTKLWY 701

Query: 510  AKKGRQQFISRFGNEVIDVL-DEFLNFTLRNEQNSYSSLQELISELEQYPP------TIK 562
             +  R   ++         L D F       ++   + + + ++ +  Y         ++
Sbjct: 702  DEAYRYILLTNPEYHSYLDLYDYFFEAARLADEQHIA-ISDFVANIRSYAENLEKPDEME 760

Query: 563  RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                 +++ V+IM+VH +KGLE P+V +     +    K   K +     +    +P   
Sbjct: 761  IPFEGDNDAVQIMSVHKSKGLEFPIVCIPSCDYKGIPIKKDGKFYFSDEYSVAMHLPPVK 820

Query: 623  P-QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-- 679
              +    N   +++ + L +    E  RLLYV +TRA  +LII      + ++       
Sbjct: 821  GFEGNPENIFYTEMKEELGQKQVAEAKRLLYVALTRAECRLIISGTLPIAAKEDQYTENV 880

Query: 680  -TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP-----ENTPLEREETIKQ- 732
               ++ +   F         +   S+          +   P     E  P+ER+    Q 
Sbjct: 881  QRSFEEIKKFFTEQNPNSSTRSFFSLLLSAIANDILAEKEPVFSFEEILPIERKTVTSQI 940

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ-----------TFN 781
                +     ++  ++          P T  T  + +     +  Q             +
Sbjct: 941  PQSRKTDYAAVYRKLQIKPAHRLTEKPVTAVTGLEKDSRWTNAREQEPPAMSGSDLSAAD 1000

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
             G + HK                I +Y  +     P K  K +         + +   A+
Sbjct: 1001 IGSLAHK---------------AIEAYFLQRDISIPEKLKKEIHTMRDTFFNSELGKKAL 1045

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
            +                 ++ +++G+ID +  +   I+I +YKT   +       P  H 
Sbjct: 1046 AAQLRK---TEYGFITRLENKLVAGQIDLLFEADNCIYIVDYKTDSVIN------PENHR 1096

Query: 902  AQLSIYEKILKDS-----YPNKSLVCLLIYVSEPKVFIIPQ 937
             QL +Y+K + D         K +  +L Y+   +   + +
Sbjct: 1097 LQLQVYKKAVDDLCRIKHAEQKPIRLVLFYLRHAQAVEVTE 1137


>gi|307298415|ref|ZP_07578218.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915580|gb|EFN45964.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 969

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 144/845 (17%), Positives = 285/845 (33%), Gaps = 80/845 (9%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           + + + +       + + Y +   ++  LDF+ L+  T DLL K      ++ K      
Sbjct: 186 IIEGSKSFAAAYSEILSDYRDRTVRSGFLDFDQLLTETRDLLLK---MPEVQEKYRDRFK 242

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            I +DE QDT  +Q E+IR L E+         S   +F VGD KQSIY F GA+     
Sbjct: 243 FIFVDEFQDTDELQSEIIRLLREE---------SKNRVFFVGDSKQSIYRFRGADVSVFN 293

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
           +  +  Q           +  L ++ RS  D++T  +K+F         +E         
Sbjct: 294 KTMKSFQN------NGGELRNLRINRRSHPDLVTFQNKLFGKIMKRDFENEF-------- 339

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
             R      ++                 ES             +  +AR +   I   + 
Sbjct: 340 -FRSIYDEDIESLPY---------QRDIESSRVRIIRTESSDDSREVARSVRALIEEELV 389

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T     +KR I   DI +L+R              L     I           +   +
Sbjct: 390 FKTKTGEYEKRRIVPGDIAILLRTFSKISSYENALEKL----NIPFYTVGSRNFYEQPEV 445

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             L++    ++   D+ + V  L SP F  S D++  + ++R                  
Sbjct: 446 SGLLSWLDLLVDPLDNNNLVSFLLSPAFGASLDEVLTLRSKR--DLRRLPLYFALMESKE 503

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTL 537
            +F H+I  + +   +    SP +     +       +  +    E +   + + L    
Sbjct: 504 DRFAHLIDLLKKFGKLKYILSPSEILEKFVQETDYLPKLATLKSGERMIANVKKLLELAK 563

Query: 538 RNEQNSYSSLQEL----ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             ++   SSL+EL     + ++    +     +   + V+I+TVH +KGLE P+V + DT
Sbjct: 564 DLDRMG-SSLRELSSNIKAFIDSSDESEAALETEESDSVKILTVHKSKGLEFPIVIVGDT 622

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             +  +               D G  I   +      ++  L    ++   EE  R LYV
Sbjct: 623 FWKKKNSDRRL-------FFHDGGFLISKSKPDREEGLIGSLASLEEEKEFEEEKRTLYV 675

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            ++RA + +II  +  + + +  ++     ++       ++V+        +        
Sbjct: 676 ALSRAREMIIISLNGRSDSSRPWSKMICSSLLQ---SESDKVEASFEGIVKHFYPIDLPS 732

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                    PL  E T    + +    K L        +E  + + S   + G       
Sbjct: 733 IQETVYIEEPLLPEVTSVLPLTDSSYIKYLSPTSITADDEFELQSESYAGSPGLVK---- 788

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY---KNLLLSITR 830
                    GL+ H LL+ +  + +      + S      +          +  L  + +
Sbjct: 789 ----NAAGIGLLAHYLLEPVGVISKRGSVTTLESILN-GGRPVSVDRINFNEYDLSEVKK 843

Query: 831 LLENPMMTTAMSCDSYSEVSV-SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
           +L   +    +     +E               ++ G +D++ +      I ++K     
Sbjct: 844 VLSTLVAHPLIKEIEGAERVFSEFHFQHGFGKYVLMGIVDKLYLKDGKWRIVDFKFASLN 903

Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII---PQNKLNKAFAE 946
                     +  Q+++Y  ILKD      +   L+++ + K   I     +   K   +
Sbjct: 904 K----RFINKYRFQMNLYLYILKDLLS--PIEATLLFLRDGKTEKIMLEDSDSFEKELLQ 957

Query: 947 ISTKI 951
           + +K 
Sbjct: 958 MISKA 962


>gi|77412397|ref|ZP_00788706.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111]
 gi|77161557|gb|EAO72559.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111]
          Length = 759

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 121/774 (15%), Positives = 243/774 (31%), Gaps = 139/774 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61
           G    ++  L ++  + +    V+  N             + ++A  L  A+Q       
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87

Query: 62  ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107
                     E  +   +  F       Q+ ++ + I + + D      +  L    +  
Sbjct: 88  HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + +     K          +       Y+E  +++  +DF+DLI+ T  L  +     
Sbjct: 148 NDLLNEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++   +          ++ L  ++RST  IL   + V +  +N +  
Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW             +Q  +    +   +       A 
Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TI N++                KD  VL R    +  I            I     
Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     I+D++A    + +  D++SF  ++  P        + KI      ++ ++
Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQSMSL 436

Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                    +   I  L       +  +    +L      +    + 
Sbjct: 437 LDASSNVMMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 496

Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571
             E    I+ ++EFL+ T   +          + L  L   L +          +    E
Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     VF                                 
Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA   L +   +  +   K++       + +    
Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 642

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             + + +    + +     + E  T   +   L++    ++   + ++  +L +
Sbjct: 643 LIQYQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQPQVTAQLQA 696


>gi|72383505|ref|YP_292860.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str.
           NATL2A]
 gi|72003355|gb|AAZ59157.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus
           str. NATL2A]
          Length = 805

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 116/642 (18%), Positives = 221/642 (34%), Gaps = 103/642 (16%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y +A   N  LDF+DL++    LL++ +    IR        H+L+DE QD
Sbjct: 207 KLVAETYRLYRKALAANNALDFDDLLLIPVQLLQQNE---KIRTYWHSRFKHVLVDEYQD 263

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  +     +    + R++F VGD  QSIYSF  A+ + ++  +    K
Sbjct: 264 TNWTQYELIKQLVTNGKDPSSFQDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGK 323

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           ++ +     ++++L  ++RST+ IL   + + S  +        +T              
Sbjct: 324 KSLDNKYDSTLVKLEENYRSTSTILEAANSLISNNKERIDKVLRATR------------- 370

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +    T   D + +       A  + + +  +        + 
Sbjct: 371 ---------------GEGEPIRLTRCDDEIAE-------AEAVIHRLRIL--------DA 400

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ +L R    +  I          + I  +        D   IKDL+A  R
Sbjct: 401 SNPELNWGDMAILYRTNAQSRAIEDSL----VRWSIPYIVVGGLRFYDRREIKDLLAYLR 456

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + +L  P     +  + ++     +    ++      E ++  A     
Sbjct: 457 LLINPSDSVSLLRVLNVPKRGIGKTTVQRLSDAASQLKIPLWEVVNDPEAVRSLAGRSAK 516

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFT 536
                 + I+EL       SP +   L+L       + I+       E    L E +N  
Sbjct: 517 GLLIFSELINELQSHLLSSSPAELVQLVLEKSGYLSELIATGTDEAEERRRNLQELVNAA 576

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E++  ++L+  +S          +      N V +MT+H++KGLE PVV LV    
Sbjct: 577 LQYQEESEDANLEGFLSTAALSSDADNKD--TASNRVTLMTLHSSKGLEFPVVCLVGMEQ 634

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                            + EE  RL YVG+
Sbjct: 635 GLFPSYRSLDDPS----------------------------------SLEEERRLCYVGL 660

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +       +     I L+           +  
Sbjct: 661 TRAKEKLFLFHASERRMWGGMREPAIASIFLSEIPEELVKGDIPLSGGATLRREKNLDRL 720

Query: 716 THHPE-----NTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           T         + P E E  +++        K+     + + +
Sbjct: 721 TRIDRQSNKKSFPSEAENAVRKTYSGPSPGKRWSVNDRVEHS 762


>gi|227832527|ref|YP_002834234.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
            ATCC 700975]
 gi|262183605|ref|ZP_06043026.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
            ATCC 700975]
 gi|227453543|gb|ACP32296.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
            ATCC 700975]
          Length = 1070

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 159/1026 (15%), Positives = 303/1026 (29%), Gaps = 184/1026 (17%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSL--SMETGNPTILKKAQTLQQASQTQCIEE 64
            +  N        + + + +  VS+    +S   ++ T   T+LK A+T+    + +  ++
Sbjct: 138  VEPNARIIT-EAERYAIAHEVVSNYTGSLSTDSAVATVTATLLKLAETMDG--ELKDPQD 194

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
             +      F       +K+  T+   +   DL++ L   +     +              
Sbjct: 195  LYEH-EDIFRKTAEDLEKSKRTKG--EFGKDLQKYLDTQRLRLEYL-------------- 237

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                    L    ++ + +  V+ F + +     L K   +      +       I++DE
Sbjct: 238  -------PLVEALKKEQSERGVITFGEQMSIAATLAKNFPLLG---EQQSARYRVIMLDE 287

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDTS  Q  ++RSL      G +       + AVGD  QSIY + GA  + +       
Sbjct: 288  YQDTSHAQRILLRSLFGGEREGLS-------VTAVGDPMQSIYGWRGATAENLEAFVTDF 340

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
             +     G      +L  S+R+ + +L++ + V S       LS                
Sbjct: 341  PQ---PDGTPAPKDQLTTSWRNPSTVLSLANDVASKL---FSLSPGERPVDELSPKPTAP 394

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             G V+L        +                             IA  +  +  +     
Sbjct: 395  AGKVELGYFASEDEER--------------------------AFIAEHLRRLYESTPEGE 428

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
            +            VLVR  + +PLI      +     +         L     I+DL+A+
Sbjct: 429  DFSA--------AVLVRTNRQSPLIAAALDEV----GVPNEIFGLGGLLWQPEIQDLVAV 476

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE---------------- 468
               ++  +D  + + +L  P+      DI  + +++       E                
Sbjct: 477  ATLLVRPQDTAAALRVLTGPMCGLGIADIQALHSRQRNLAGATEGRTRWNGGDPLDHLAT 536

Query: 469  ------------------------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                                       +++  G+ + + V   +  L   +   + +D  
Sbjct: 537  QVEEITAEGPDQVLGLADALADLGERDRYSAEGLERMEEVSSKLRYLRTYSLGKTLNDIV 596

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              I      R + ++         LD F +F           L  L+  LE         
Sbjct: 597  ADIELLFGLRTEVLASGKPGRATHLDAFADFVAGF---HGDGLAGLLDYLELAKEKEDGL 653

Query: 565  HSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK---HIKKMHIMPSLNDDPG 617
                     N V+IMTVH AKGLE   V +V   S  +  +    + K+   P   D   
Sbjct: 654  ELGEVPLVRNRVQIMTVHKAKGLEWEHVCVVHADSSSYKAQAETFLTKIEKAPGDEDVID 713

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
            +P         +   +   +  ++   EE  RL YV MTR    L +        + KS 
Sbjct: 714  VPEDAVTRSDFDKACTAFKEQNREFQAEEAARLFYVAMTRTESTLTVTGSGTNRLKGKSK 773

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTN-SINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
            +  +  +   +  + E V    +    + ++E  A + S       P             
Sbjct: 774  KGPYSYLQLLADKHPELVGHWDIPETPVEEEEGSALQASFPSLSPQPEALNAAEAVRAAM 833

Query: 737  QKIPK---------------------KLFSPIKNDINEPYILNPSTI--------DTKGK 767
            + +P                      K       D+  P  L  S +            +
Sbjct: 834  EDLPPLRDGEVFGLWEQEASALIEEHKALQAPVVDVELPGELTASDMVAMSADPTQFARR 893

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                     N    RG   H  L+  F  P         +   ++       E  + L S
Sbjct: 894  QRRPIPFKPNSYAKRGTAFHAWLEDRFGAP---------ALLGEDELPGSHDEPDHDLES 944

Query: 828  I-TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKT 885
            +    L +            +   V         D ++ GR+D +         I ++KT
Sbjct: 945  LKESFLASEWAQ-------RTPAFVEAPFEITIGDSVVRGRMDAVFQQPDGSWLIVDWKT 997

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
                             QL++Y +  +  +   ++     YV E  +            A
Sbjct: 998  GRRPQGAALASA---QIQLAVYAEAWRRIHGVDTVRAAFYYVYENYLLEPDDLPAGARLA 1054

Query: 946  EISTKI 951
            E+ +  
Sbjct: 1055 ELLSSA 1060


>gi|158334598|ref|YP_001515770.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017]
 gi|158304839|gb|ABW26456.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017]
          Length = 780

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 114/735 (15%), Positives = 226/735 (30%), Gaps = 129/735 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERF 66
           +  E  E I K              +    ++E   P    K    + +          F
Sbjct: 67  AAREMKERIEKLFAEQLAQ------QDHGKALELLAPQQQTKLRSQVYKTITKPLWIGTF 120

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKE----------------------KLKKSQ 104
             L +  L  +    ++   ++  +      E                      + +  +
Sbjct: 121 HSLCARLLRMEIEKYQDEKGRKWQRNFSIFDESDVQSLIKDIVVNQLNLDDRKFQPRSVR 180

Query: 105 DEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                 +++    +  ++        +   + + Y+++   N  LDF+DLI     LLK+
Sbjct: 181 FAISNAKNQGWNPQELEANQQDFRGRVVAQVYSKYQDSLAANNGLDFDDLIRVLVQLLKQ 240

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGD 221
                 +     Q+  H+L+DE QDT+  Q++++R L  +    +N      R++F VGD
Sbjct: 241 NG---QVLGYWHQQFRHMLVDEYQDTNRTQYDLLRLLATNGTDTRNFKDWEHRSVFVVGD 297

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             QSIYSF  A+ K ++  ++       +   + ++++L  ++RST +IL V +++    
Sbjct: 298 ADQSIYSFRAADFKILMGFQQDFGDGLPDGDTR-TMVKLEENYRSTENILQVANELIDNN 356

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                     T                                +        D L +   
Sbjct: 357 TERIDKILKPTR----------------------------GAGEPIYCYRADDELHESD- 387

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  +   I  +              +   D  +L R    +             + 
Sbjct: 388 ------FVIQQIRTL--------EQSHPELSWGDFAILYRTNAQSRAFEEGL----VRWS 429

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I           D   IKD++A  R I++  D +S   ++ +P     +  + ++     
Sbjct: 430 IPYTVVGGLKFYDRREIKDVLAYLRLIVNPADTVSLKRVINTPRRGIGKTTLDRLMNAAQ 489

Query: 462 E-TETVYE------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
           E    ++E       ++  A          ++ +       +  S  +    IL      
Sbjct: 490 ELGVPLWEMLTEETAVKTLAARSAKPILQFVEMMRHWQGQVETQSAANIIQGILEDSGYV 549

Query: 515 QQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
           +   ++  +E  D    + E  N  L+  + +    + L S L                 
Sbjct: 550 RDLKNQGTDEADDRIGNVQELQNAALQYAEENTD--ESLPSFLANTALASDLDDLDEKTT 607

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE P+VFLV     +F +                               
Sbjct: 608 VSLMTLHAAKGLEFPIVFLVGLEQGLFPN------------------------------- 636

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                     +  EE  RL YVG+TRA ++L I                    + +   +
Sbjct: 637 ---FRSLEDPAAIEEERRLCYVGVTRAQERLFISHARERRLYGSREPAMPSLFLSELPRD 693

Query: 692 DERVKKIKLTNSINK 706
             +   +    S   
Sbjct: 694 LLQTNSLSAIPSEPP 708


>gi|322387882|ref|ZP_08061489.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC
           700779]
 gi|321141155|gb|EFX36653.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC
           700779]
          Length = 762

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 102/591 (17%), Positives = 192/591 (32%), Gaps = 122/591 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QDT
Sbjct: 167 IVAKCYDAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQDT 223

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   +  
Sbjct: 224 NHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ-- 271

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   ++ L  ++RST  IL   + V    +N +  +                    
Sbjct: 272 ------AKVVLLEENYRSTKTILQAANDVIKNNKNRRPKN-------------------- 305

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW           + +Q  +    D   +       A  +A TI  +         G+ 
Sbjct: 306 -LW-------TQNADGEQIIYYRANDEQDE-------AVFVAKTIDEL---------GRN 341

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +    KD  VL R    +  I            I               I+D++A    I
Sbjct: 342 QNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNLI 397

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKFQ 482
            +  D++SF  ++  P        + KI      +  ++ +                   
Sbjct: 398 ANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQEMSMLDASANIMLSGIKGKAAQSIW 457

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
                I +L       +  +    +L          ++   E    ++ ++EFL+ T   
Sbjct: 458 DFANMILDLREQLDQLTITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKNF 517

Query: 540 --------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                   E+     L   +++L     T   +   +   V +MT+H AKGLE PVVF++
Sbjct: 518 DDNPDSQEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFII 575

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                VF                                              EE  RL 
Sbjct: 576 GMEENVFPLS----------------------------------RASEDPDELEEERRLA 601

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           YVG+TRA   L +   ++     K+N       + +   +    + +    
Sbjct: 602 YVGITRAEKILYLTNANSRLLFGKTNYNRPTRFINEISSDLLTYQGLARPA 652


>gi|188586470|ref|YP_001918015.1| recombination helicase AddA [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|251764535|sp|B2A610|ADDA_NATTJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|179351157|gb|ACB85427.1| recombination helicase AddA [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 1282

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 138/731 (18%), Positives = 262/731 (35%), Gaps = 52/731 (7%)

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            FS L S               +++        +KL ++     K     +  ++      
Sbjct: 294  FSKLPSVSKNDDVDEDLKKDCKKLRDHGKKTFQKLVQNYFTRSKDELLRDLQQLSPLMNK 353

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             + +   ++  YEE KK+  ++DF DL     +LL +      I  ++ Q  + +++DE 
Sbjct: 354  LIDMVINMDDKYEEVKKQRGIMDFSDLEHYVYELLDQYPE---IVSELHQRYDEVMVDEY 410

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QD + +Q  ++  LT          S    LF VGD KQSIY F  AEP+  L +     
Sbjct: 411  QDINQVQNAILEKLT-------GQQSISPDLFMVGDVKQSIYRFRLAEPELFLNKYDTFD 463

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
            +R+     + S+IEL  +FRS+  +L  V+ +FS          +    ++   +     
Sbjct: 464  QRSE----EGSLIELQENFRSSPMVLESVNYLFSRIMTGSLSGIEYNEKVKLIPASK--- 516

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ------------ESSASILARRIAYTI 353
               +L+       D +   Q E+     D   +            E      A+ IA TI
Sbjct: 517  -PRELYLNEDDNEDDKYEGQAENENQVIDGRTEVHLLENKDTNSREEDTEREAQLIATTI 575

Query: 354  SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            ++++  +    +      R +   D ++L RK K+      L   +  ++ + +      
Sbjct: 576  NSLVEEEYRIYDRDLDDYRKLDYSDFVILSRKTKEQA---ELVTNVFQEHGVPLYAELDT 632

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--- 467
                   ++ +++L + I +   D+    +L+SPL     +++ +I      T+      
Sbjct: 633  GYFAAQEVQVMLSLLKIIDNPRQDIPLAGVLRSPLVGLDSNELVEIRRSNPGTDYYEACK 692

Query: 468  -------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS- 519
                   E   + +   I K Q     +     I++  S  +    I             
Sbjct: 693  RVLTNSIEQQNQCSEKTIQKMQKFFSQLERWRRISRERSLAELIWDIYQITDYLDYVAGF 752

Query: 520  RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVRI 574
              G E    L  F +  L+ +  S+S L + ++ +E+           R  S N N VR+
Sbjct: 753  PGGRERQANLWSFYDRALQFDSFSHSGLVKFLNFIEKLVEQDFDLGKARTVSENENVVRL 812

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            M++H +KGLE PVVF++  G+    +     + +   L   P +     + K        
Sbjct: 813  MSIHKSKGLEFPVVFVMGLGNNFNFNDQKGDLLLHKDLGLGPKLVDLTNRIKYPTIAHQA 872

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            +   L + T  E  R+LYV MTRA ++L +         K S                 +
Sbjct: 873  IKGSLGRETLAEEMRILYVAMTRAEEKLFLVGSGKDIESKISVPEEPAAAQNYLDWIYPQ 932

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            + +         ++    +       N     E  + Q    +   ++     +      
Sbjct: 933  LGEDSELFHKIWNDIPGQQDGKSVEYNWKSYFESLLSQTFTWEVDQEEFEDQKRTLEQAI 992

Query: 755  YILNPSTIDTK 765
                P  I T+
Sbjct: 993  SYSYPYNIATE 1003



 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/274 (10%), Positives = 76/274 (27%), Gaps = 49/274 (17%)

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
            + K        S  + ++  + + +++  + D  K       P+  +  E    N     
Sbjct: 1005 VGKMSVTDLAKSDTYIDSKIVSQNQSLSSVQDHYKKLAATQIPMFLETTEDAGDNKYESY 1064

Query: 764  TKGKTNLESLL-----SDNQTFNRGLIIHKLLQVIF--------TLPEHKRKNFITSYCT 810
             +  T  +        S       G  IH   Q +            E +  N +     
Sbjct: 1065 KEHHTPSKRPEFLKSNSGLTGAEAGTSIHLAFQHLPINSDLNSQEFSEEQISNQLDDLVN 1124

Query: 811  KNAKLWPAKEYKNLLLS-ITRLLENPMMTTAMSC--DSYSEVSVSGKINC---------- 857
            K   +    +   +    I +  ++ +    +        E+  +  +            
Sbjct: 1125 KE--IITQAQRDVISEDLIMKFFQSELGQAILERPKGLKRELPFTLGVPAWEMLAGSEEC 1182

Query: 858  -----------------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899
                               + ++I G ID +     N ++ ++KT       ++ I    
Sbjct: 1183 QAELEAENIETTELQGLSDETVVIQGVIDYLFWDGTNYYLIDFKTDKLNTSNMDEIEKRL 1242

Query: 900  ---HIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
               +  Q+ +Y + + + +        L +V   
Sbjct: 1243 QGKYRMQIQMYLRAITEIFNITPTKAYLYHVPTG 1276


>gi|284053307|ref|ZP_06383517.1| ATP-dependent DNA helicase Rep [Arthrospira platensis str. Paraca]
          Length = 680

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 110/556 (19%), Positives = 184/556 (33%), Gaps = 99/556 (17%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + + Y++A   N  LDF+DLI+    L  + +    +     Q+  HIL+DE QD
Sbjct: 106 RVIAEVYSLYQDALAANNALDFDDLILVPVALFSQNE---QVLAYWHQKFCHILVDEYQD 162

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++IR LT +     +  +   R++F VGD  QSIYSF  A+ + +L  ++    
Sbjct: 163 TNRTQYDLIRLLTTNGEPPPSFHNWQNRSIFVVGDVDQSIYSFRMADYRIMLEFQQDFGD 222

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
              +   + ++I+L  ++RS  +IL V + +              T              
Sbjct: 223 GLADDDSR-TLIKLEENYRSRENILEVANHLIQNNTTRIDKILRPTR------------- 268

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                      D + +       A  +   I  +I  +      
Sbjct: 269 ---------------SPGVPVCCHKADDEMAE-------AHFVVDQIRTIINQNP----- 301

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               I      +L R    +     + R     Y I           D   IKD ++  R
Sbjct: 302 ---EIGFGSFAILYRTNAQSRPFEDVLRREDVHYNI----VGGLKFYDRREIKDAISYLR 354

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN------CGIS 479
            I +  D +S   ++  P        I  +     +    ++E I    +          
Sbjct: 355 VIANPADTVSLQRVINVPRRGIGRTTIDGLNNAAQQLGVPLWEIISDQDSVNTITGRAAK 414

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536
                 + I       +  +  D    IL      Q    +  +E     D L E  N  
Sbjct: 415 SVNRFAQMIQSWRDRLETTTALDILDGILEDSGYFQDLKQQGTDEADNRLDNLRELCNAV 474

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            +  E+   +SLQ  ++                   V +MT+H+AKGLE P+VFLV    
Sbjct: 475 SQFQEEEEDTSLQAFLARASLSSDLDN--LQEGQEAVSLMTLHSAKGLEFPIVFLVGLEQ 532

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F +       +                                    EE  RL YVG+
Sbjct: 533 GLFPNFRSINDPLS----------------------------------LEEERRLCYVGI 558

Query: 656 TRASDQLIICKHSNTS 671
           TRA +QL I   S   
Sbjct: 559 TRAQEQLFITHTSERR 574


>gi|300712678|ref|YP_003738491.1| putative helicase [Halalkalicoccus jeotgali B3]
 gi|299126362|gb|ADJ16700.1| putative helicase [Halalkalicoccus jeotgali B3]
          Length = 1253

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 146/903 (16%), Positives = 303/903 (33%), Gaps = 86/903 (9%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
             +      L   L           D     +      A   L + +   Y   K+    L
Sbjct: 351  ALTAACETLINTLDPENQNLS--FDGAAIERSIPYVYAIARLYQTVREEYTRRKEAQHAL 408

Query: 148  DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            D+ DLI  T D L+  D +   R+++ ++  ++++DE+QDT   QWE++  LT       
Sbjct: 409  DYSDLIERTIDFLETHDRA---RHELREQFEYLMVDEIQDTDPRQWELVTLLTG----SD 461

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +   + +F VGDEKQSIY F  A+       +   ++   ++ +     +L  +FR+ 
Sbjct: 462  GPNFDGQNVFLVGDEKQSIYRFRRADVTMFREARDRLKRANPDSTETAQ--QLSGNFRTL 519

Query: 268  ADILTVVDKVFSIPENAQGLSEDSTTTIR--HRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            +  LT ++++F      +G                R          E +V     Q    
Sbjct: 520  SGPLTFINELFEEVFQPEGDEYQPYEARPQWLTPERSEGTEIDGTVEYLVVPETDQDVAP 579

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIG---TDTIFSNGKKRVIQAKDILVLVRK 382
                 S+FD     S     A  +A  ++ +             + R  Q +D+ +L R 
Sbjct: 580  LGLENSWFDERTYRSKGEREAYGVAARLTQLFDDPPQIYDPETDEYRAAQPRDVALLFRT 639

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
            R   P            Y I           +   I+ L+ L + +     ++    +L+
Sbjct: 640  RTRFPEFERAFEE----YDIPYSSFGARGFYETSEIQPLVNLLKVLQDPTQNIPLYGVLR 695

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA------Q 496
            SPLF F+++ +  +           E + +      +  +     + +    A      +
Sbjct: 696  SPLFGFTDEQLAVLYDSD-------ECLWRQLATMDNALETAHGQLKQWREQAGLDGSDR 748

Query: 497  FCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
              +     + I+                + +  +++F       E+ S   L E++  +E
Sbjct: 749  ITTWASLLSEIIDDTGYLISVGADERPEQAVVNVNKFREQLRTWEEGSALPLSEVVERIE 808

Query: 556  QYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF-------SHKHIK 604
            +          A      + V++ TVH+AKGLE P+V + +    V        +  + +
Sbjct: 809  RERDQEDDPGEATIPAAIDGVQLRTVHSAKGLEFPIVVVPELSRGVNERATITDNSSYSQ 868

Query: 605  KMHIMPSLNDDPGIPIWIPQ-----SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             +  + ++ D+P + I  P        +            ++  + E  RLLYV  TR  
Sbjct: 869  SLAYLETVGDEPVLGIKGPSPANSFETTATPDYEIAKTVQQQELRAESRRLLYVATTRVR 928

Query: 660  DQLIICKHSNTSNEKKSN---------QRTWYDMVYD-SFHNDERVKKIKLTNSINKDEW 709
            D L++       ++ ++            +W D+V      + E +  +    S      
Sbjct: 929  DHLLLTSTHTVGSDSEATFGEYDTGEQASSWRDLVQPVLLEDRELLSDLATAGSATHLLG 988

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN---------PS 760
                     P       E    +   + ++P+   S     ++   + +          S
Sbjct: 989  DGQYTVRRPPTPVAGPAESASTERACDIELPEPPESSAGIALSATAVRDLVSDHSSHDES 1048

Query: 761  TIDTKGKTNLESLLSDN----QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
              +T+ + +     S +         G  +H+L ++             T       K  
Sbjct: 1049 RTETEPEHSAFLTESSSKKGLAPTQFGTAVHRLCELSLVGSTIDWSAAPTQIVDTPDK-L 1107

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN-----CPKKDIIISGRIDQI 871
                 K+L   +   + +            + + V    +            + G ID +
Sbjct: 1108 SPTVLKDLQNQVQYGVSDIE-------QVEATLPVEATYDEYQVRLELPTGQVVGDIDHL 1160

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
            +++    +I +YKT     +++E +   + AQL +Y   L  +  ++  V  LI+ +   
Sbjct: 1161 TVTDDCYYISDYKTDTLGDRDLETVAEHYFAQLYVYACALSQADSSRDCVLRLIFTNAET 1220

Query: 932  VFI 934
               
Sbjct: 1221 TAE 1223


>gi|45657496|ref|YP_001582.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600735|gb|AAS70219.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 732

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 196/617 (31%), Gaps = 119/617 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   YE+ K  N   DF DLI  T  L +K   +     K   +  ++++DE QD
Sbjct: 167 KAVSAIYKEYEKRKDANYAFDFGDLIWKTVQLFQKSSDAI---SKYRHKWEYVMVDEYQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+E++  L  +           R L  VGD+ QSIYS+ GA+   +L  ++   + 
Sbjct: 224 TNKVQYELVLLLAGE----------KRNLCVVGDDDQSIYSWRGADIGNILNFEKDFPES 273

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST++I+     V S     +                      
Sbjct: 274 V--------VIKLEENYRSTSNIILAASNVISNNTQRKEKEIF----------------- 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       +           + +   +       A  +   I +     T      
Sbjct: 309 -----------TNNPEGAPVVLNEFENESEE-------AHGVITRIRSAYSGGT------ 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + K+I +  R    +       R    +  I       F   D   IKDL+A    
Sbjct: 345 ----EYKNIAIFYRTNSQSRYFEEALR----NVGIPYKIFGGFRFFDRAEIKDLIAYLNV 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-----ETVYEYIQKFANCGISKFQ 482
           + +  D +S + ++  P     +  + KI     E      E + +          SK +
Sbjct: 397 VSNPLDSVSLLRIINYPPRGIGDSGVEKIREFSLEKGISILEVLGQEDIPLKKAAKSKGK 456

Query: 483 HVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
            +     +LI  ++   SP +    +L               E    ++ L E +N    
Sbjct: 457 ELYNLFCDLIEKSEKGLSPSEIALELLNRSGLMSHLKDEGTEESVARLENLQELVNSIEE 516

Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            E+ +   SL+E ++++               + V +MTVH AKGLE  VVFL       
Sbjct: 517 YEKNSDSPSLEEYLNQISLITSEE--DSKELTDYVNLMTVHNAKGLEFEVVFLSGLEEGT 574

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H    +                                       EE  RL YV +TR
Sbjct: 575 FPHSMSLEESHFGD---------------------------------EEERRLFYVALTR 601

Query: 658 ASDQLIICKHSNTSN----EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           A ++L +     +      E +   R   ++    F N   V + +           +  
Sbjct: 602 AREELFLSYCRTSRKFGKVEDRIPSRFLSEIPRKCFGNRGYVSRERTARKPQGPPVASKI 661

Query: 714 WSTHHPENTPLEREETI 730
              ++   +        
Sbjct: 662 RQANNELESHHAPPPDP 678


>gi|317472670|ref|ZP_07931985.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA]
 gi|316899847|gb|EFV21846.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA]
          Length = 735

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 105/565 (18%), Positives = 188/565 (33%), Gaps = 114/565 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++  K N  LDF+DL+  T +L +       +     +   +I++DE QDT+ 
Sbjct: 169 AEIYKEYQKQLKANNALDFDDLLFKTVELFQFHPE---VLDYYQERFRYIMVDEYQDTNT 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+++I  L   +          + L  VGD+ QSIY F GA  K +L  + + Q     
Sbjct: 226 IQFQLISMLARKY----------QNLCVVGDDDQSIYKFRGANIKNILNFEGVFQ----- 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST +IL   ++V    +  +  +                     L
Sbjct: 271 ---DAEVIKLEQNYRSTKNILNAANEVIRNNKGRKEKA---------------------L 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           +     +  Y     +       A +I   I  +              
Sbjct: 307 W-------TENDDGDTIVFHQYGTEYEE-------AGQIVEEIGRLAKDG---------- 342

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +  K+I +L R    + +             I               +KD++   + + +
Sbjct: 343 VDYKNIAILYRTNAQSRIFEEKF----MIKNIPYRIVGGTNFYQRKEVKDVICYLKAVDN 398

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKFQHV 484
             DDL+   ++  P        I K+      +     +   +            K +  
Sbjct: 399 GLDDLAVKRIINVPRRGIGATTIDKVQTYAIEQNIGFLDACFQARQIESLANAKRKIEKF 458

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
            + I +    AQ  S  D F  IL          +    E +   + ++E LN  +  E+
Sbjct: 459 SELIADFREQAQKGSLEDLFHYILEETGYVTGLEAEGTEEAMARIENINELLNKIVAYEE 518

Query: 542 N-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                +L  L+ E+         +   + N V +MT+H+AKGLE P VF+      +F  
Sbjct: 519 TAEEPTLSGLLEEIALVADID--SLEDSDNRVILMTLHSAKGLEFPYVFISGMEDGIFPS 576

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              I    +   EE  RL YVG+TRA D
Sbjct: 577 YMT--------------------------------IISEDQEELEEERRLCYVGITRAKD 604

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMV 685
           +L +        + ++        +
Sbjct: 605 RLYLSAAKRRMMQGRTQFNKVSRFI 629


>gi|239617417|ref|YP_002940739.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1]
 gi|239506248|gb|ACR79735.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1]
          Length = 991

 Score =  304 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 163/840 (19%), Positives = 303/840 (36%), Gaps = 103/840 (12%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           K+  +T       K L  HYE   ++N  LDF+DL+I T DLL        +R K  +  
Sbjct: 206 KILLATRTFHKHFKQLVEHYENEARRNNSLDFDDLLIKTRDLLHNFP---QLREKYVRRF 262

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            +ILIDE QDT  +Q  +I  L E+             L  VGD KQSIY F GA+    
Sbjct: 263 KYILIDEFQDTDWLQKTIIDYLHEE---------ERNFLLFVGDAKQSIYRFRGADVTVF 313

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTI 295
            R K   + +  +         L ++ RS  D++   +++FS     +  G    S    
Sbjct: 314 NRTKAEFEIKNAHLET------LSVNRRSHPDLVEFQNRLFSKIMLQDRSGKYYKSIYDT 367

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
              +    Q         +VS++                            + +A  I N
Sbjct: 368 EVSAIPYEQDSNDSRVRVLVSENSDDS------------------------QVVAQYIKN 403

Query: 356 MIGTDTIFSNGK----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           ++  +  F N       R I+  DI +L+RK  +                I         
Sbjct: 404 LLSEEITFRNKDGSYSTRKIKPGDIAILLRKFVNVSRYEDALEE----NGIPYYTVGSKA 459

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
             D   I   +A    I+   DD +F   L SP F  + +D+F++ ++            
Sbjct: 460 FYDRPEIAGPLAWLDVIVDPLDDAAFARFLLSPAFGATFEDLFELKSKEKH------ISD 513

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                   +F+ + +   +   +    SP       +   +   +    + G   I+ + 
Sbjct: 514 AILKTTDERFKPLRELFIKYSELKHVLSPSSVLQKFVDETEYLPKLASMKRGERAINNVK 573

Query: 531 EFLNFTLRNEQNSYSSLQEL----ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           + L      ++    SL+EL     + ++    T     +   + V+++TVH +KGLE P
Sbjct: 574 KMLEIAKELDRLGT-SLRELSSNIKAFIDSSEETEATLETEESDSVKLLTVHKSKGLEFP 632

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VV + DT  +  S      +       +D  I       K  + I S L    K+   EE
Sbjct: 633 VVIVADTFWKGKSDGSPYILT-----GEDGYIVSREQPKKESDTIESQLHLEEKEKNLEE 687

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             R LYV  +RA + L++      + +K ++ R W  M+  +    E      + + +  
Sbjct: 688 EKRTLYVAFSRAREMLVVS----LNGKKATSDRPWSQMLQGTLITGENQLCEDMEDLVEI 743

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
            E           E    E E   ++     + P   F    +D +    ++PS +    
Sbjct: 744 VE---------PGEAVREEPESIEEKESFIIQWPDIEFIKSVDDRSYIKYISPSLLAEDF 794

Query: 767 KTNLESLLSD----NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK------NAKLW 816
              +           +    G + H +L+ +       R   + S  +       +   +
Sbjct: 795 TIEISESEPGDILIRKPRELGTLTHSVLEAVGIRGRTGRVTTLESLLSGGIPASVDRIRF 854

Query: 817 PAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
             ++Y+ +   + +L+++P++     S ++ SEV    K        ++ G +D++    
Sbjct: 855 SEEDYEIVRKILYKLIDHPLIKEIETSDEAMSEVQFQKKF----DRYVLLGIVDKLYRVN 910

Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            N  I ++K      +  +     +  Q+  Y  ILK+          L+++ + +V  +
Sbjct: 911 GNWRILDFK----FAEFSQKSFPKYEFQMKFYLYILKELLA--PECAKLLFLKDGEVREV 964


>gi|150388771|ref|YP_001318820.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF]
 gi|149948633|gb|ABR47161.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF]
          Length = 724

 Score =  304 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 102/578 (17%), Positives = 188/578 (32%), Gaps = 117/578 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y+   + N  LDF+DLI+ T  L         +     ++  +IL+DE QDT++
Sbjct: 170 ATIYEMYQNKLRSNNALDFDDLIMKTVQLFLTHP---PVLAFYQEKFKYILVDEFQDTNM 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+ ++  L +              L  VGD+ QSIY + GA+ + +L  ++        
Sbjct: 227 AQYTLVSLLAK----------KHHNLCVVGDDDQSIYGWRGADIRNILGFEKDFPN---- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST +IL+  + V +     +            +       G V  
Sbjct: 273 ----TRVIKLEQNYRSTKNILSAANAVVAKNSERKDK----------KLWTDNIPGEV-- 316

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                             +    +   +       A  I   I  M  T+T         
Sbjct: 317 ----------------IQYYKASNEYDE-------AGYITNAIDEMKETETR-------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  +L R    +  +      L     I           D   I+D++A  + I +
Sbjct: 346 -SYNDFAILYRTNAQSRTLEE----LLMKKAIPYRLLGGTRFYDRKEIRDILAYLKIIEN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQH 483
             DD++   ++  P        I K+     E E+ +       E +   +     +   
Sbjct: 401 PVDDVNVKRIINVPKRGIGLRSIEKLEIHADERESSFFNALLDVELMPDLSTRVKVQSSK 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
             + I  L  I            I    +   +       E    I+ L+EFL+ T   +
Sbjct: 461 FTQMITSLRDIKDEVPVTTIVKEIYKQSEYIDELHKEDTVEAKGRIENLEEFLSLTKDFD 520

Query: 541 QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +N  + ++ L   L +            +   V +MT+H+AKGLE PVVF+      +F 
Sbjct: 521 EN--AEIKTLEEFLARTSLETSLDLMDEDEAAVVLMTLHSAKGLEFPVVFIPGMEEGIFP 578

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                + +                                          L YVG+TRA 
Sbjct: 579 SSMSLQENNEEEERR-----------------------------------LCYVGITRAM 603

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           ++L +      +   ++N       + +       ++K
Sbjct: 604 EKLYLSHAMMRTLYGRTNANAVSRFIREIPEELITMEK 641


>gi|307704751|ref|ZP_07641647.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597]
 gi|307621660|gb|EFO00701.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597]
          Length = 763

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 104/592 (17%), Positives = 194/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +         G+
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDEL---------GR 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KD  VL R    +  I            I               I+D++A    
Sbjct: 341 SQNFLHKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANTQEMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMILDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTSDVAEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|294786844|ref|ZP_06752098.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305]
 gi|315226480|ref|ZP_07868268.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM
           10105]
 gi|294485677|gb|EFG33311.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305]
 gi|315120612|gb|EFT83744.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM
           10105]
          Length = 901

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 111/727 (15%), Positives = 214/727 (29%), Gaps = 122/727 (16%)

Query: 8   SLNESYELIYKDLWPLPY-FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+     VS  +      +       +  +        T   +   
Sbjct: 110 AAREMKERLGSLIGPVAETMWVSTFHSACVRILRRHGK-DIGLSSGFSIY-DTADCQRLV 167

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT---YKMFKST 123
            L+   F        K    + +     D K  L   + +  +    F+           
Sbjct: 168 KLICQDFNIDS----KRYTPRAVLGAISDWKNSLATWRQKLDEFAPDFHPGVPTHSIGDM 223

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
             +  +   + A Y+        +DF+DLI+ T +L      +            +I +D
Sbjct: 224 GKAERVFAIVYAEYQHRLGLANAVDFDDLIMRTVELFSTSPEA---LGYYRHRFRYIFVD 280

Query: 184 EVQDTSLIQWEVIRSLTE--DFFVGKNTHSSPRTL---FAVGDEKQSIYSFHGAEPKRVL 238
           E QDT+  Q++++R+L+   +         S   L     VGD  QSIY+F GA+   +L
Sbjct: 281 EYQDTNHAQYQLVRALSGIDEEKDPSGRPVSGDPLAWVTVVGDSDQSIYAFRGADISNIL 340

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             ++   +           I L  ++RST  IL   + V S  EN +             
Sbjct: 341 DFEKDFPQ--------AKTIMLEQNYRSTQTILDAANAVISRNENRKPKR---------- 382

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                      LW  +                          +A    + IA   + ++ 
Sbjct: 383 -----------LWTAMGQGDKIVGFAA--------------DNAQQEGQWIAQETARLVE 417

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +              DI ++ R    +  +         +  I           +   +
Sbjct: 418 EE---------GYAYSDIALMYRANAQSRSLEEAF----INAGIPYQLVGGTRFYERKEV 464

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN-- 475
           KD +A  + I++  DD++   +L  P           +         T ++  ++     
Sbjct: 465 KDAIAYLQCIVNPSDDVNMRRILNVPKRGLGARAESMLNEYASDNGITFWQAAEQAGQIE 524

Query: 476 ----CGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFISRFGNE---VI 526
                 +       + + +L   A+     P      +L       +       +    +
Sbjct: 525 GMTSRTLKPLAKFREVMTDLRRFAEENDSHPSSVVAQVLDQSGLVDELKQSLDPQDMTRV 584

Query: 527 DVLDEFLNFTLRNEQNSYS-SLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLE 584
           D L +  +     EQN+   ++   +                 +  +V +MT+HTAKGLE
Sbjct: 585 DNLSQLQSVAAEYEQNTPDATVAGFLETTALVTDSDSLPDEGEDRGQVTMMTLHTAKGLE 644

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVVFL       F H                                            
Sbjct: 645 YPVVFLTGMEEGTFPHSRSL----------------------------------ENTDEL 670

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            E  RL YVG+TRA  +L + + S  +             + +        ++ + ++  
Sbjct: 671 SEERRLAYVGITRARRRLYLTRASMRAQWGNLQDFMPSQFLDEIPGELIEWERKETSSER 730

Query: 705 NKDEWIA 711
            +  W  
Sbjct: 731 IRSRWED 737


>gi|167748917|ref|ZP_02421044.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662]
 gi|167651539|gb|EDR95668.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662]
          Length = 735

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 104/565 (18%), Positives = 188/565 (33%), Gaps = 114/565 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++  K N  LDF+DL+  T +L +       +     +   +I++DE QDT+ 
Sbjct: 169 AEIYKEYQKQLKANNALDFDDLLFKTVELFQFHPE---VLDYYQERFRYIMVDEYQDTNT 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+++I  L   +          + L  VGD+ QSIY F GA  K +L  + + Q     
Sbjct: 226 IQFQLISMLARKY----------QNLCVVGDDDQSIYKFRGANIKNILNFEGVFQ----- 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST +IL   ++V    +  +  +                     L
Sbjct: 271 ---DAEVIKLEQNYRSTKNILNAANEVIRNNKGRKEKA---------------------L 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           +     +  Y     +       A +I   I  +              
Sbjct: 307 W-------TENDDGDTIVFHQYGTEYEE-------AGQIVEEIGRLAKDG---------- 342

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +  K+I +L R    + +             I               +KD++   + + +
Sbjct: 343 VDYKNIAILYRTNAQSRIFEEKF----MIKNIPYRIVGGTNFYQRKEVKDVICYLKAVDN 398

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKFQHV 484
             DDL+   ++  P        I K+      +     +   +            K +  
Sbjct: 399 GLDDLAVKRIINVPRRGIGATTIDKVQTYAIEQNIGFLDACFQARQIESLANAKRKIEKF 458

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
            + I +    AQ  S  D F  IL          +    E +   + ++E LN  +  E+
Sbjct: 459 SELIADFREQAQKGSLEDLFHYILEETGYVTGLEAEGTEEAMARIENINELLNKIVAYEE 518

Query: 542 N-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                +L  L+ E+         +   + N V +MT+H+AKGLE P VF+      +F  
Sbjct: 519 TAEEPTLSGLLEEIALVADID--SLEDSDNRVILMTLHSAKGLEFPYVFISGMEDGIFPS 576

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              I    +   EE  RL YVG+TRA +
Sbjct: 577 YMT--------------------------------IISEDQEELEEERRLCYVGITRAKE 604

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMV 685
           +L +        + ++        +
Sbjct: 605 RLYLSAAKRRMMQGRTQFNKVSRFI 629


>gi|302392793|ref|YP_003828613.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501]
 gi|302204870|gb|ADL13548.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501]
          Length = 707

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 100/555 (18%), Positives = 179/555 (32%), Gaps = 116/555 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y++  K+N  LDF+DLI+ T +L ++ ++   +         +IL+DE QD
Sbjct: 167 RVVGEIYESYQQQLKENNALDFDDLIMKTVELFEEYEL---VLEYYQNRFRYILVDEYQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            +  Q+ +I  L ED           + +  VGD+ Q IY F GA+   +L  +    + 
Sbjct: 224 VNHAQYRLINLLAED----------HKNICVVGDDDQGIYGFRGADISNILDFEEDYSQ- 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++RST  IL    +V       +     +         +    G 
Sbjct: 273 -------TEIIKLEQNYRSTERILDAAYEVVRNNRGRKPKKLWTENDQGAPIKQYKARGE 325

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +                                    A  I   I  +   +       
Sbjct: 326 TE-----------------------------------EAEYITEEIMKLREEE------- 343

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +   D  VL R    + ++  + R       I           +   IKD++A  R 
Sbjct: 344 --ALDYDDFAVLYRTNAQSRVLEEVFR----KQGIPYRIIGGLKFYERKEIKDILAYLRV 397

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN------CGISK 480
           + +  DD+    ++  P        + ++         ++YE +Q+             +
Sbjct: 398 LYNPSDDICLQRIINVPKRGIGATTVGRLNNFAAQHNISLYEAVQRVEEIDSINSRCSGQ 457

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537
            +   + +      A   +  +    +L      +       ++     + + E L    
Sbjct: 458 VRRFNELMSYFRQRADELNALELTKELLDETDYLKNLRQEDTDQARSRIENIKELLTDIE 517

Query: 538 RN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              EQ    +L   + E+            A+   V +MT+H+AKGLE PVVFL      
Sbjct: 518 EYIEQEGDITLGGYLEEVALITDVDNLEAEAS--AVVMMTLHSAKGLEFPVVFLSGMEEG 575

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H                                        K   EE  RL YVGMT
Sbjct: 576 LFPHSRSFD----------------------------------DKEAIEEERRLCYVGMT 601

Query: 657 RASDQLIICKHSNTS 671
           RA ++L +    +  
Sbjct: 602 RAEEKLYLTHALSRK 616


>gi|187931065|ref|YP_001891049.1| DNA helicase II [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187711974|gb|ACD30271.1| DNA helicase II [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 740

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 125/757 (16%), Positives = 234/757 (30%), Gaps = 144/757 (19%)

Query: 5   FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43
            GL+  +    + +D                  ++   L  + G                
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKL 100
             I ++ + +   S        F  ++   L   T +    KN    + ++++  +K+ +
Sbjct: 68  KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHTHELGLDKNFRILDQDEQAQLVKKVI 127

Query: 101 KKSQDEFIKI----------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
                +  K           + +    +  K T        ++   YEE  + +  LDF 
Sbjct: 128 NNLDLDDKKYPPKLLQNFINKQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDFA 187

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++   +L         +R     +  +ILIDE QDT+ +Q+  I+ L  D        
Sbjct: 188 DLLLYLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWIKLLITD-------- 236

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                + AVGD+ QSIY + GA    +    +  +           II+L  ++RST +I
Sbjct: 237 --NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKNI 286

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           L V + V    +N                         +LW        +  + ++    
Sbjct: 287 LKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVVLY 318

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
              +   +       A+ I   I  +              +   DI +L R    + ++ 
Sbjct: 319 CAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVLE 361

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                      I       F   D   IKD +A  R  ++  D+L+F  ++ +P      
Sbjct: 362 ES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIGN 417

Query: 451 DDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +  I    +  + + ++                S     I+ I  +       S    
Sbjct: 418 KTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDKL 477

Query: 504 FTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISEL 554
              ++        +         + ID L E ++     E       ++   LQ+ +S  
Sbjct: 478 LESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSFA 537

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                          + V++MT+H +KGLE   VFLV     VF    I           
Sbjct: 538 VLEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS-------- 587

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           +  +      +    E  RL YV +TRA   L I      S   
Sbjct: 588 --------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRSIFG 633

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +S+ +     V +         K++ T +  K +  A
Sbjct: 634 RSSFQVKSRFVAEIDSQHLSQGKLEFTAAKPKTKQKA 670


>gi|282898588|ref|ZP_06306576.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196456|gb|EFA71365.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii
           CS-505]
          Length = 777

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 105/620 (16%), Positives = 204/620 (32%), Gaps = 105/620 (16%)

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAH 136
           T  K I+T+++N  S       K  +      +++  + + F+    +    +   +   
Sbjct: 159 TLIKEIVTKQLNLDSKKFDP--KSVRYAISNAKNQGLSPREFEEQQPNYRGRVIGEVYNL 216

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++    N  LDF+DLI+    L  + +    +      +  HIL+DE QDT+  Q+E++
Sbjct: 217 YQDQLAANNSLDFDDLILVPTRLFGQNE---QVLGYWHNKFRHILVDEYQDTNRTQYELL 273

Query: 197 RSLTEDFF-VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           R L  +        +   R++F VGD  QSIYSF  A+   +L  ++       +   + 
Sbjct: 274 RLLVTNGECRKNQWNWDNRSVFVVGDADQSIYSFRMADFTILLEFQQDFGDGLDDDDTR- 332

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
           ++++L  ++RS  +IL   +++              T  +                    
Sbjct: 333 TMVKLEENYRSCENILQAANELIENNTERIDKILKPTRDV-------------------- 372

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    +   +    D + +       A  +   I N+              I    
Sbjct: 373 --------GESIYFHKADDEVAE-------ADFVINQIRNL--------TTNNPDINWGS 409

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    +         L   Y+I           D   IKD++A  R I +  D +
Sbjct: 410 FAILYRTNAQSRPFEE----LLVKYQIPYTVVGGMKFYDRKEIKDVIAYLRAINNPADTV 465

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYI 488
           S + ++ +P     +  I  +     +   T++E       +                 I
Sbjct: 466 SLLRVINTPRRGIGKSTIDVLINASQQLGTTLWEILSDETSVNTLTGRAAKSVTSFTSMI 525

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYS 545
            +           +    IL      +  + +  +E  +    + E  N   + +  +  
Sbjct: 526 KKW--QTTQVPASEVLEGILEDSGYLRDLMDQGTDEADNRISNVKELYNAVSQFQDENKG 583

Query: 546 SLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           S   L + L+     +     S   + V +MT+H +KGLE P+VFLV     +F      
Sbjct: 584 SDISLQAFLQSAALSSDLDDLSETRDVVSLMTLHASKGLEFPIVFLVGLEQGLFPG---- 639

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL YVG+TR  ++L +
Sbjct: 640 ------------------------------YRSLQDPKALEEERRLCYVGITRTQERLYL 669

Query: 665 CKHSNTS--NEKKSNQRTWY 682
                      ++    + +
Sbjct: 670 SHARERRLYGSREPALPSQF 689


>gi|302330341|gb|ADL20535.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           1002]
          Length = 785

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 118/753 (15%), Positives = 222/753 (29%), Gaps = 159/753 (21%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +   + P+       ++ + S  +             L         ++   
Sbjct: 61  AAAEMRERVAHLVGPIASRMW--VSTFHSTCVRILREQAQ-LVAGLNSNFTIYDSDDSKR 117

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL+          +K    + +     +LK +L        +     N Y+         
Sbjct: 118 LLAMISKDMNLDIKK-FTPRLLGAGISNLKNELISPATAVAEAESTKNPYETT------- 169

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   ++   +DF+DLI  T  + K+      +     +   H+LIDE QD
Sbjct: 170 --VAAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHP---QVTEYYRRRFRHVLIDEYQD 224

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +I  L         T  +   L  VGD  QSIY+F GA  + +   +R     
Sbjct: 225 TNHAQYVLIHELV-------GTGETASELCVVGDSDQSIYAFRGATIRNIEEFERDYPN- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + + L  ++RST  IL   + V S  EN +                      
Sbjct: 277 -------ATTVLLEQNYRSTQTILNAANSVISQNENRRKKK------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW  + S           +     +   +       AR IA  I  +           
Sbjct: 311 --LWTALGS-------GDPITGYVADNEHDE-------ARFIAQEIDALADKG------- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ ++ R    +  +  +         I           +   I+D++A  R 
Sbjct: 348 ---IDYSDMAIMYRTNNSSRAVEDVF----MRSGIPYKVVGGTRFYERKEIRDVIAYLRL 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH--- 483
           + + ED +S   ++ +P     +  +  +     ++  ++ + +   +   +S       
Sbjct: 401 LDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVSLLGARGR 460

Query: 484 -----VIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE---VID 527
                 +  +  L   A              +    IL     + +       +    +D
Sbjct: 461 NAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQDGARLD 520

Query: 528 VLDEFLNFTLRNEQN------------------------SYSSLQELISELEQYPPTIKR 563
            L+E ++                                   SLQ  +  +       + 
Sbjct: 521 NLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSLVADADQI 580

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                   V +MT+HTAKGLE PVVFL+      F H                       
Sbjct: 581 -PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPH----------------------- 616

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                      L          E  RL YVG+TRA   L I +    S+           
Sbjct: 617 -----------LRALGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASR 665

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            + +        ++ +  +S +     ++  +T
Sbjct: 666 FLTEIPQELLDWRREEPESSFDAWGQPSWGRNT 698


>gi|221231829|ref|YP_002510981.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC
           700669]
 gi|220674289|emb|CAR68831.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC
           700669]
          Length = 763

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDSDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|168334212|ref|ZP_02692415.1| ATP-dependent DNA helicase PcrA [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 731

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 109/547 (19%), Positives = 189/547 (34%), Gaps = 114/547 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   +   Y++   +N V+DF+DL++N   L         +      +  +IL+DE QDT
Sbjct: 165 IIAKIYDAYQDKLYENNVMDFDDLLVNVCILFNNHPD---VLSFYQNKFKYILVDEYQDT 221

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q+E+IR L +            + L  VGD+ QSIY + GA+   +L  ++  +   
Sbjct: 222 NCVQYELIRQLAD----------KHKNLCVVGDDDQSIYGWRGADISNILEFEKDFEN-- 269

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  +II+L  ++RST +IL   + V    EN +                       
Sbjct: 270 ------TTIIKLEQNYRSTKNILEAANAVVKNNENRKPKVLF------------------ 305

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                     D++   Q E +    +           A  IA  IS  +           
Sbjct: 306 ---------TDNETGEQIELYVVKNEY--------READVIAAQISKDLSEYRR------ 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                KD  +L R    + ++            I           +   IKDL++  + I
Sbjct: 343 ---DYKDFAILYRTNAQSRVLEEKM----IQSSIPYRMLGGVRFYERKEIKDLVSYLKII 395

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG-------ISKF 481
           ++ +DD++   ++  P        I KI    ++ +  +  + K              K 
Sbjct: 396 VNVQDDVAARRIINIPKRGIGAASIDKIQQAANDYQVNFYEVAKNIRQFGILGKTATEKV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLR 538
                 I EL  +AQ  +       I+               +  D    + EF++    
Sbjct: 456 SVFANLIEELKELAQEENILALLQAIIVKTDYNNFLKETEPEDAADRILNVREFVSKAAA 515

Query: 539 N-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             + N  ++L   + E+             N N V +MT+H++KGLE PVVF+      +
Sbjct: 516 YVQSNEEANLNNFLEEITLVADVDNYD--QNSNAVVLMTLHSSKGLEFPVVFMPGLEEGL 573

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          K+  EE  RL YVG+TR
Sbjct: 574 FPSHMS--------------------------------ASDEDKTKLEEERRLCYVGITR 601

Query: 658 ASDQLII 664
           A ++L I
Sbjct: 602 AREKLYI 608


>gi|312135101|ref|YP_004002439.1| uvrd/rep helicase [Caldicellulosiruptor owensensis OL]
 gi|311775152|gb|ADQ04639.1| UvrD/REP helicase [Caldicellulosiruptor owensensis OL]
          Length = 714

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 110/550 (20%), Positives = 181/550 (32%), Gaps = 114/550 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +  K+    DF+DL+  T  L +       I  K   +  +IL+DE QDT+  
Sbjct: 169 EVYKLYNKLLKEYNAFDFDDLLYYTVVLFETNPD---ILEKYQNKFKYILVDEYQDTNYA 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  I  L++              +  VGD+ QSIYSF GA  K +L  +++        
Sbjct: 226 QFYFIYLLSQ----------KHMNVCVVGDDDQSIYSFRGANIKNILEFEKVFSN----- 270

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RST  IL+  ++V       +                        LW
Sbjct: 271 ---AKVIKLEKNYRSTKTILSAANEVIKHNYYRKSKM---------------------LW 306

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++    S FD + +       A  +A +I N+I             +
Sbjct: 307 -------TDNHEGEKIFLYSAFDEVNE-------AEFVAASIKNLIENG----------V 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               I VL R    +             Y +           +   IKD++A  R I + 
Sbjct: 343 LPSQIGVLYRTNAQSVNFENALSA----YSVPYKVVGALRFYERKEIKDIIAYLRLITNS 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISKFQHVI 485
            DDLS   ++  P        + KI     E      T  +      F      K    +
Sbjct: 399 HDDLSLFRIINVPRRGIGNSTLEKIKVLSEEYGVSAYTILLERAKFDFDKKTYEKLNSFV 458

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             I +L   A+  S      L+L      +  +S    E       +++ ++     E+ 
Sbjct: 459 SLIEDLKAEAENLSVSQTIKLVLDRTGYLESLLSSKSEEEFQRAKNIEQLISAAAIFEEE 518

Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               ++Q  ++ +                +V +MTVH AKGLE  VVFL      +F   
Sbjct: 519 NEEPTVQNFLNSITLSSEEEDTQKEE---KVSLMTVHAAKGLEFEVVFLTGLEEGLFP-- 573

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                        +V        +   EE  RL YV +TRA   
Sbjct: 574 -----------------------------LVRAEEALEAEKELEEERRLCYVAITRAKKL 604

Query: 662 LIICKHSNTS 671
           L++   +N  
Sbjct: 605 LVLTYANNRR 614


>gi|225858900|ref|YP_002740410.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585]
 gi|225721717|gb|ACO17571.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585]
          Length = 763

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYIDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTKEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|300858060|ref|YP_003783043.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685514|gb|ADK28436.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis
           FRC41]
          Length = 846

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 119/753 (15%), Positives = 222/753 (29%), Gaps = 159/753 (21%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +   + P+       ++ + S  +             L         ++   
Sbjct: 122 AAAEMRERVAHLVGPIASRMW--VSTFHSTCVRILREQAQ-LVAGLNSNFTIYDSDDSKR 178

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL+          +K    + +     +LK +L        +     N Y+         
Sbjct: 179 LLAMISKDMNLDIKK-FTPRLLGAGISNLKNELISPATAVAEAESTKNPYETT------- 230

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   ++   +DF+DLI  T  + K+      I     +   H+LIDE QD
Sbjct: 231 --VAAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHP---QITEYYRRRFRHVLIDEYQD 285

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +I  L         T  +   L  VGD  QSIY+F GA  + +   +R     
Sbjct: 286 TNHAQYVLIHELV-------GTGETASELCVVGDSDQSIYAFRGATIRNIEEFERDYPN- 337

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + + L  ++RST  IL   + V S  EN +                      
Sbjct: 338 -------ATTVLLEQNYRSTQTILNAANSVISQNENRRKKK------------------- 371

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW  + S           +     +   +       AR IA  I  +           
Sbjct: 372 --LWTALGS-------GDPITGYVADNEHDE-------ARFIAQEIDALADKG------- 408

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ ++ R    +  +  +         I           +   I+D++A  R 
Sbjct: 409 ---IDYSDMAIMYRTNNSSRAVEDVF----MRSGIPYKVVGGTRFYERKEIRDVIAYLRL 461

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH--- 483
           + + ED +S   ++ +P     +  +  +     ++  ++ + +   +   +S       
Sbjct: 462 LDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVSLLGARGC 521

Query: 484 -----VIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE---VID 527
                 +  +  L   A              +    IL     + +       +    +D
Sbjct: 522 NAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQDGARLD 581

Query: 528 VLDEFLNFTLRNEQN------------------------SYSSLQELISELEQYPPTIKR 563
            L+E ++                                   SLQ  +  +       + 
Sbjct: 582 NLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSLVADADQI 641

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                   V +MT+HTAKGLE PVVFL+      F H                       
Sbjct: 642 -PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPH----------------------- 677

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                      L          E  RL YVG+TRA   L I +    S+           
Sbjct: 678 -----------LRALGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASR 726

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            + +        ++ +  +S +     ++  +T
Sbjct: 727 FLTEIPQELLDWRREEPESSFDAWGQPSWGRNT 759


>gi|124025096|ref|YP_001014212.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A]
 gi|123960164|gb|ABM74947.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A]
          Length = 805

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 116/642 (18%), Positives = 221/642 (34%), Gaps = 103/642 (16%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y +A   N  LDF+DL++    LL++ +    IR        H+L+DE QD
Sbjct: 207 KLVAETYRLYRKALAANNALDFDDLLLIPVQLLQQNE---KIRTYWHSRFKHVLVDEYQD 263

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  +     +    + R++F VGD  QSIYSF  A+ + ++  +    K
Sbjct: 264 TNWTQYELIKQLVTNGKDPSSFQDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGK 323

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           ++ +     ++++L  ++RST+ IL   + + S  +        +T              
Sbjct: 324 KSLDNTYDSTLVKLEENYRSTSTILEAANSLISNNKERIDKVLRATR------------- 370

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +    T   D + +       A  + + +  +        + 
Sbjct: 371 ---------------GEGEPIRLTRCDDEIAE-------AEAVIHRLRIL--------DA 400

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ +L R    +  I          + I  +        D   IKDL+A  R
Sbjct: 401 SNPELNWGDMAILYRTNAQSRAIEDSL----VRWSIPYIVVGGLRFYDRREIKDLLAYLR 456

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + +L  P     +  + ++     +    ++      E ++  A     
Sbjct: 457 LLINPSDSVSLLRVLNVPKRGIGKTTVQRLSDAASQLKIPLWEVVNDPEAVRSLAGRSAK 516

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFT 536
                 + I+EL       SP +   L+L       + I+       E    L E +N  
Sbjct: 517 GLLIFSELINELQSHLLSSSPAELVQLVLEKSGYLSELIATGTDEAEERRRNLQELVNAA 576

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E++  ++L+  +S          +      N V +MT+H++KGLE PVV LV    
Sbjct: 577 LQYQEESEDANLEGFLSTAALSSDADNKD--TASNRVTLMTLHSSKGLEFPVVCLVGMEQ 634

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                            + EE  RL YVG+
Sbjct: 635 GLFPSYRSLDDPS----------------------------------SLEEERRLCYVGL 660

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +       +     I L+           +  
Sbjct: 661 TRAKEKLFLFHASERRMWGGMREPAIASIFLSEIPEELVKGDIPLSGGATLRREKNLDRL 720

Query: 716 THHPE-----NTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           T         + P E E  +++        K+     + + +
Sbjct: 721 TRIDRQSNKKSFPREAENAVRKTYSGPSPGKRWSVNDRVEHS 762


>gi|253575957|ref|ZP_04853291.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844751|gb|EES72765.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 661

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 105/611 (17%), Positives = 202/611 (33%), Gaps = 121/611 (19%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           K  Q      ++   T + ++  +      +   + A Y+   ++N  LDF+DLI+ T +
Sbjct: 150 KAVQAAISTAKNELITPQQYEQKIGDYFEGIVAKIYAQYQRQLRQNNSLDFDDLIMKTIE 209

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           L K    +  +     ++  +I +DE QDT+  Q+ + R L +              +  
Sbjct: 210 LFK---AAPDVLDFYQKKFQYIHVDEYQDTNRAQYMLCRMLAD----------KHHRICV 256

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  QSIY + GA+   +L  ++   +           I L  ++RST+ IL   ++V 
Sbjct: 257 VGDSDQSIYRWRGADISNILNFEKDYPE--------AKTILLEQNYRSTSTILNAANEVI 308

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                 +                        LW         + +  +           +
Sbjct: 309 GHNTGRKPKK---------------------LW-------TDKGDGDKIKVYRANSEHDE 340

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                     +   I N + +              +D  +L R    + +I  +      
Sbjct: 341 GY-------FVTTEIHNSVKSGR----------NYRDHAILYRTNAQSRVIEEIL----I 379

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I           D   IKDL+A  R + + +DD+S   ++  P     +  + K+  
Sbjct: 380 KSDIPYQIVGGIKFYDRKEIKDLLAYLRVLSNPDDDISLTRIINVPKRGIGDTTVAKLAD 439

Query: 459 QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
              +  T    + +       A    +        IH L  +  + S  +    +L   +
Sbjct: 440 AAAQRGTSIYRVLEVVDDLGIAGRTRNALVEFFDMIHGLHQMVPYLSVTELTEKLLEVTQ 499

Query: 513 GRQQFISRFGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSAN 568
            R +  +    E     + +DEFL+ T+  E  N   SL   +++L           +++
Sbjct: 500 YRLELQNENTLEARSRLENIDEFLSVTMEFENNNEDKSLVSFLTDLALIADIDSMNDNSD 559

Query: 569 -----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + V +MT+H+AKGLE PVVF++     VF H      +                
Sbjct: 560 AEKPNDDAVVLMTMHSAKGLEFPVVFIIGMEEGVFPHSRAFLDNEELEEERRL------- 612

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                                       YVG+TRA ++L +      +   ++       
Sbjct: 613 ---------------------------AYVGITRAEEKLYLSCAQMRTLFGRTTANPPSR 645

Query: 684 MVYDSFHNDER 694
            + +     + 
Sbjct: 646 FLDEIPEELKE 656


>gi|168483162|ref|ZP_02708114.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC1873-00]
 gi|172043466|gb|EDT51512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC1873-00]
          Length = 763

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|325103975|ref|YP_004273629.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
 gi|324972823|gb|ADY51807.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
          Length = 768

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 107/671 (15%), Positives = 199/671 (29%), Gaps = 132/671 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A Y     K   +DF+DL+  TN LLK       + YK   +  ++++DE QDT+
Sbjct: 175 LGKVYATYTARCFKAGAMDFDDLLFKTNVLLKDHPD---VLYKYQHKFKYLMVDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +++ L    +           L  VGD+ QSIY F GA  + +L  ++       
Sbjct: 232 FSQYLIVKKLAAVTY----------NLCVVGDDAQSIYGFRGANIQNILNFQKDYP---- 277

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  + +L  ++RST +I+ V + +     N    +  S                  
Sbjct: 278 ----DVKVFKLEQNYRSTQNIVNVANSIIKNNANQLEKNVFSD----------------- 316

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                    +        S++   +          +A  I                   +
Sbjct: 317 -------NDEGDKIKITRSYSDNEEGKS-------VAESILQE-------------RSIK 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D  VL R    +  +    R       I               IKDL+A  R   
Sbjct: 350 SLDWNDFAVLYRTNAQSRSMEEALR----KANIPYKIYGGMSFYQRKEIKDLIAYFRLTF 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE----YIQKFANCGISKFQHV 484
           +  D+ +F  ++  P     +  I K I       +T+++      Q   N   +   + 
Sbjct: 406 NNNDEEAFKRVINYPARGIGKTTIDKMILAADQNGKTLFDIATNAFQFLDNRAATAVNNF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
              I     IA+  +  +  + I       +        E     + + E LN       
Sbjct: 466 ATTIQSFAAIAKNNNAFEAASHIAQHSGLLKDLYEDKSVEGLARYENIQELLNGIKEFSE 525

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E      L   + ++             + + V +MT+H++KGLE   V++V     +F
Sbjct: 526 REDIEDRGLSVFMEDVALLTNDD-NQKPEDKDTVSLMTIHSSKGLEFNQVYVVGLEENLF 584

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                       ++  EE  RL YV +TRA
Sbjct: 585 PSQMSLNS----------------------------------RADLEEERRLFYVAVTRA 610

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             +L I   ++                       E  + +   +    +  +  +  + +
Sbjct: 611 EKKLHISYATSRFKFGTLVNS-------------EPSRFLDEIDPRYLEIELPKKAFSSN 657

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
           P +   ER     +  +          P             S +             D  
Sbjct: 658 PSSFDGERSAWKSKTSEAPASTDVFSKPKPASQKVKTT---SLLSKAHVPTPGFKPEDTS 714

Query: 779 TFNRGLII-HK 788
               G I+ H+
Sbjct: 715 NLQVGEIVEHE 725


>gi|76057858|emb|CAJ18308.1| ATP-dependant helicase [Paenibacillus jamilae]
          Length = 605

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 104/561 (18%), Positives = 191/561 (34%), Gaps = 125/561 (22%)

Query: 126 SLTLAKYLNAHY---EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             T+ + L   Y    +  K N  LDF+DLI+ T  L K+      +     ++  +I +
Sbjct: 19  LATILRGLWRRYIPSTQRLKNNNSLDFDDLIMATIQLFKE---VPEVLDFYQKKFQYIHV 75

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q+ + + L +              +  VGD  QSIY + GA+   +L  + 
Sbjct: 76  DEYQDTNRAQYMLCKMLAD----------KHHRICVVGDSDQSIYRWRGADISNILNFEE 125

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                      +   I L  ++RST++IL   ++V       +                 
Sbjct: 126 DYP--------EARTILLEQNYRSTSNILNAANEVIGQNTGRKPKK-------------- 163

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  LW       D +   + + + +  +              IA  I   I     
Sbjct: 164 -------LW------TDKEGGAKIKVYRADSEHDEGY--------FIASEIHKNINAGK- 201

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                          +L R    + ++  +         I           D   IKDL+
Sbjct: 202 ---------TYSHHAILYRTNAQSRVVEEIL----IKSDIPYQIVGGIKFYDRKEIKDLL 248

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC--------TQRHETETVYEYIQKFA 474
           A  R + + +DD+S + ++  P  +  +  + K+                ++     +  
Sbjct: 249 AYLRLLSNPDDDISLIRIINVPKRSIGDTTVGKLQAVYRQNYNYGVQNGISLTAVFDEIE 308

Query: 475 N-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI--- 526
           +           +     +H  +++ ++ S  +    ++     R    +    E     
Sbjct: 309 HVGVSAKVTKAVKEFAGLLHNWVNMQEYLSVTELVEEVIEKTGYRDMLKNERTLEAEGRL 368

Query: 527 DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLE 584
           + LDEFL+ T   E Q+   SL   +++L       +         EV +MT+H+AKGLE
Sbjct: 369 ENLDEFLSVTQTFESQSEDKSLVAFLTDLALVADIDRVDEDPTAGEEVILMTMHSAKGLE 428

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVVF+V     +F H                                      +++   
Sbjct: 429 FPVVFIVGLEEGIFPHTRSL----------------------------------MEEDEM 454

Query: 645 EEYNRLLYVGMTRASDQLIIC 665
           +E  RL YVG+TRA ++L + 
Sbjct: 455 QEERRLAYVGITRAEEELYLS 475


>gi|148994163|ref|ZP_01823478.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68]
 gi|168488930|ref|ZP_02713129.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195]
 gi|147927406|gb|EDK78436.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68]
 gi|183572486|gb|EDT93014.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195]
 gi|332073447|gb|EGI83926.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17570]
          Length = 763

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYCADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVAEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|302205782|gb|ADL10124.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis
           C231]
 gi|308276017|gb|ADO25916.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19]
          Length = 846

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 118/753 (15%), Positives = 222/753 (29%), Gaps = 159/753 (21%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +   + P+       ++ + S  +             L         ++   
Sbjct: 122 AAAEMRERVAHLVGPIASRMW--VSTFHSTCVRILREQAQ-LVAGLNSNFTIYDSDDSKR 178

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL+          +K    + +     +LK +L        +     N Y+         
Sbjct: 179 LLAMISKDMNLDIKK-FTPRLLGAGISNLKNELISPATAVAEAESTKNPYETT------- 230

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   ++   +DF+DLI  T  + K+      +     +   H+LIDE QD
Sbjct: 231 --VAAVYVEYQRRLRQANAVDFDDLIGETVRIFKEHP---QVTEYYRRRFRHVLIDEYQD 285

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +I  L         T  +   L  VGD  QSIY+F GA  + +   +R     
Sbjct: 286 TNHAQYVLIHELV-------GTGETASELCVVGDSDQSIYAFRGATIRNIEEFERDYPN- 337

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + + L  ++RST  IL   + V S  EN +                      
Sbjct: 338 -------ATTVLLEQNYRSTQTILNAANSVISQNENRRKKK------------------- 371

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW  + S           +     +   +       AR IA  I  +           
Sbjct: 372 --LWTALGS-------GDPITGYVADNEHDE-------ARFIAQEIDALADKG------- 408

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ ++ R    +  +  +         I           +   I+D++A  R 
Sbjct: 409 ---IDYSDMAIMYRTNNSSRAVEDVF----MRSGIPYKVVGGTRFYERKEIRDVIAYLRL 461

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH--- 483
           + + ED +S   ++ +P     +  +  +     ++  ++ + +   +   +S       
Sbjct: 462 LDNPEDTVSLRRIINTPRRGIGDKAVAFLTLHSENQGVSLQQALIDASEGQVSLLGARGR 521

Query: 484 -----VIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE---VID 527
                 +  +  L   A              +    IL     + +       +    +D
Sbjct: 522 NAISGFVNMMSGLRDSAAESVNEITGMPDIGNVIAQILDITGYKAELEKSNDPQDGARLD 581

Query: 528 VLDEFLNFTLRNEQN------------------------SYSSLQELISELEQYPPTIKR 563
            L+E ++                                   SLQ  +  +       + 
Sbjct: 582 NLNELVSVAREFSSEAANQVAYAKMDGSELDDLAAVGEPEPGSLQAFLERVSLVADADQI 641

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                   V +MT+HTAKGLE PVVFL+      F H                       
Sbjct: 642 -PDNEQGLVTLMTLHTAKGLEFPVVFLMGWEDGQFPH----------------------- 677

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                      L          E  RL YVG+TRA   L I +    S+           
Sbjct: 678 -----------LRALGDPKELAEERRLAYVGITRARKALYITRAMLRSSWGNPVTNPASR 726

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            + +        ++ +  +S +     ++  +T
Sbjct: 727 FLTEIPQELLDWRREEPESSFDAWGQPSWGRNT 759


>gi|291456654|ref|ZP_06596044.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213]
 gi|291381931|gb|EFE89449.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213]
          Length = 901

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/733 (16%), Positives = 226/733 (30%), Gaps = 124/733 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +     +I      L+         +  
Sbjct: 85  AAVEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 138

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123
             L     T+     K    + I     DLK  L   ++        F        F + 
Sbjct: 139 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 198

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A YE        +DF+DLI  T +LL+       +         +IL+D
Sbjct: 199 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 255

Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L                  S P  +  VGD  QSIY+F GA+ + 
Sbjct: 256 EYQDTNHAQYVLVRELAGVDTGEKAIPGSPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 315

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++               I L  ++RST  IL   + V S  E  +           
Sbjct: 316 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 359

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +          +     +  +       A   A+ +A  I+ +
Sbjct: 360 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 392

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +          I   D+ ++ R    +  +         +  +           +  
Sbjct: 393 HAEE---------DIAYSDMAIMYRANAQSRSLEEAL----INAGLPYQLVGGTKFYERR 439

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEY------ 469
            IKD +A  + +++ +DD++   +L  P            +   R    + +        
Sbjct: 440 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGNRAEGILLAYARERGTSFFYALMHLDE 499

Query: 470 IQKFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524
           IQ       ++ +     + EL     A    P +    +L     R +       +   
Sbjct: 500 IQDVPTRTATQLKAFRDLMGELSQFTRAHDAKPSEIVAEVLEKSGLRAELEKSVDPQDAS 559

Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582
            ++ L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKG
Sbjct: 560 RLENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKG 619

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFL       F H                                         +
Sbjct: 620 LEYPVVFLTGMEQGTFPHS----------------------------------RSMEDTT 645

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             +E  RL YVG+TRA  +L + + +  S   ++        + +   +    K+ +   
Sbjct: 646 ELQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGV 705

Query: 703 SINKDEWIAYEWS 715
              +  W +  ++
Sbjct: 706 ERMRANWESDGFA 718


>gi|329929647|ref|ZP_08283344.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5]
 gi|328935973|gb|EGG32428.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5]
          Length = 673

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/723 (16%), Positives = 227/723 (31%), Gaps = 133/723 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   + +  +             + ++   L            
Sbjct: 33  GAGSGKTRVLTHRIAYLIATRKAAPWSILAITFTNKAAREMQERVSKLVGREGQDIWVST 92

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE---------------KLKKSQDEFIKI 110
           F  +    L +            I   +  L                 + K  Q      
Sbjct: 93  FHSMCVRILRRDIERIGFTSNFSILDSTDQLSVIRNVMKQHNIDPKKFEPKAIQAAMSAA 152

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   + + ++        TL   +   Y++  K N  LDF+DLI+ T  L K+      
Sbjct: 153 KNELISPQQYEQKAGDYFETLVAKVYTEYQKRLKSNNSLDFDDLIMTTIQLFKE---VPE 209

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q+ + R L +          S   +  VGD  QSIY 
Sbjct: 210 VLDFYQRKFQYIHVDEYQDTNRAQYMLCRMLAD----------SHHRICVVGDSDQSIYR 259

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++   +           I L  ++RSTA+IL   + V  +    +  +
Sbjct: 260 WRGADITNILNFEQDYPE--------ARTILLEQNYRSTANILNAANNVIGLNTGRKPKN 311

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       +    P+ + +    +              
Sbjct: 312 ---------------------LW------TEQGEGPKIKVFRGDTEHDEGY--------F 336

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   IS  I                +D  +L R    + +I  +         I      
Sbjct: 337 VTSEISKNIKDGK----------SYQDHAILYRTNAQSRVIEEIL----IKSDIPYQIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKD++A  R I + +DD+S   ++  P  +  +  + K+     E      
Sbjct: 383 GIKFYDRKEIKDMLAYLRLISNPDDDISLTRIINVPKRSIGDTTVAKLAAAAGERGISIF 442

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +      FA    +        I  L  + +F S  +    IL   + R +  +   
Sbjct: 443 RVLEIVDDLGFAGRTRNALVGFYDMIAALSRMVEFLSVTELTEKILEMSEYRLELQNENT 502

Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMT 576
            E    ++ +DEFL+ T   E+ N   SL   +++L                 + V +MT
Sbjct: 503 IESRSRLENIDEFLSVTQEFEKNNEDKSLVSFLTDLALIADIDSMNDDEEDRDDAVVLMT 562

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE PVVF++     VF H      +                             
Sbjct: 563 MHSAKGLEFPVVFIIGMEEGVFPHSRAFMDNEELEEERRL-------------------- 602

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                          YVG+TRA  QL +      +   ++        + +     +   
Sbjct: 603 --------------AYVGITRAEKQLFLSCARMRTLFGRTTANMPSRFLEEIPEELKEDT 648

Query: 697 KIK 699
           ++ 
Sbjct: 649 QMA 651


>gi|172056503|ref|YP_001812963.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15]
 gi|171989024|gb|ACB59946.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15]
          Length = 741

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 124/764 (16%), Positives = 231/764 (30%), Gaps = 137/764 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV+  N             +  +   L            
Sbjct: 32  GAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNKAAREMRDRISRLVGGVANDIWVST 91

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLK---------KSQDEFIKIRDR 113
           F  +    L +        +N    + + +   LK  LK           +     I  +
Sbjct: 92  FHSMCVRMLRRDIEKIGYNRNFTILDSSDQQSALKLVLKEQNLDPKKWDPRSMLSIISSQ 151

Query: 114 FNTYKMFKSTLASLT-----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            N  +  +   + +T         +   YE   ++N  LDF+DLI  T +L K+      
Sbjct: 152 KNELRSAEFYASIVTNPYEKTVAEIYKGYEAVLRRNNALDFDDLIGKTTELFKQNPD--- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     ++  +I +DE QDT+  Q++++  L            + + L  VGD  QSIY 
Sbjct: 209 VLSFYQRKFQYIHVDEYQDTNKAQYDLVNLLAA----------AHQNLCVVGDSDQSIYR 258

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  +               +I L  ++RS+  IL   + V       +   
Sbjct: 259 WRGADIANILSFEEDYPT--------AKVILLEQNYRSSKRILDAANHVIQNNSTRKDKK 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW             ++    +  +   +       A  
Sbjct: 311 ---------------------LW-------TENAEGEKLIVHTAENEREE-------AFY 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I N +             ++  D+ +L R    +  I            +      
Sbjct: 336 IVQEIRNALRYG----------MKLNDVAILYRTNAQSRAIEETL----LKSNVPYKMIG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVY 467
                D   IKD++A  R I +  +DLSF  ++  P        I K+      +  ++ 
Sbjct: 382 GTKFYDRKEIKDVLAYLRLISNPNEDLSFARIVNEPKRGIGATTIDKLRDFADLQGVSLM 441

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E I+       A    +K       I  L  + +F S  +    +L     RQ       
Sbjct: 442 EAIRDIELSSIAPKTAAKLTDFRTMILGLQQMQEFISLSELVEEVLEKTGYRQVLKEDKT 501

Query: 523 NEVI---DVLDEFLNFTLRNEQN------SYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E     + ++EF+      E+          ++   +++L           S    +V 
Sbjct: 502 LEAQSRLENINEFITVAQNFEKETEKADPEDQTIIAFLTDLTLVADVDSLDESDLGEQVT 561

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE P+VFL+     +F H    +                            
Sbjct: 562 LMTLHSAKGLEFPIVFLIGMEEGLFPHSRSLQDEDEMEEERR------------------ 603

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN-D 692
                           L YVG+TRA  +L +      S   ++N       + +      
Sbjct: 604 ----------------LAYVGITRAEKRLYLSHARMRSLYGRTNANLESRFLAELPEEVL 647

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
           ER  K               +         P   + +  + +  
Sbjct: 648 ERTGKKPKPLPWEDRPVPQGKAVIGRSVTKPTAMKTSGAESLGW 691


>gi|168494521|ref|ZP_02718664.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC3059-06]
 gi|225854583|ref|YP_002736095.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA]
 gi|183575566|gb|EDT96094.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC3059-06]
 gi|225724045|gb|ACO19898.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA]
          Length = 763

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|148989130|ref|ZP_01820520.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73]
 gi|147925353|gb|EDK76431.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73]
          Length = 763

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|225574543|ref|ZP_03783153.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038230|gb|EEG48476.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM
           10507]
          Length = 737

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 110/692 (15%), Positives = 220/692 (31%), Gaps = 133/692 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   +            
Sbjct: 27  GAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAQEMKERVDQIVGFGSESVWVTT 86

Query: 66  FSLLSSFFLTQ-----KFTPQKNIITQEINKK-SPDLKEKL---------KKSQDEFIKI 110
           F       L +      F  +  I   +  K    D+ ++L         +    +    
Sbjct: 87  FHSTCVRILRRYIDRIGFDNRFTIYDADDQKSLMKDICKRLQIDTKLYKERALLAQISHA 146

Query: 111 RDRFNTYKMFKSTL----ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
           +D+  + + F+       + + +A+ +   Y+   ++N  LDF+DLI+ T +L +     
Sbjct: 147 KDQLVSPEEFELNSQGDYSKMRVAE-VYKEYQTQLRRNNALDFDDLIMKTVELFQS---C 202

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     +   +I++DE QDT+L Q++ +  L   +          + L  VGD+ QSI
Sbjct: 203 PEVLESYQERFRYIMVDEYQDTNLAQFQFVSLLASKY----------QNLCVVGDDDQSI 252

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F GA  + +L  +R+             +I L  ++RST +IL   ++V       + 
Sbjct: 253 YKFRGANIENILGFERVFSN--------TKVIRLEQNYRSTKNILQAANEVIQNNAQRKP 304

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW              +  +  +     +       A
Sbjct: 305 KT---------------------LW-------TDNEEGNKVHFRHFLSGFEE-------A 329

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +   I+                   +D  VL R    + L             I    
Sbjct: 330 EYVVGDIAQKHREGI---------CSYRDCAVLYRTNAQSRLFEEKF----LMANIPYRL 376

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                      IKDL++  + + + +DDL+   ++  P        + ++      +  +
Sbjct: 377 VGGVNFYARKEIKDLLSYLKTVDNAKDDLAVRRIINIPKRGIGATTLLRVQEYATEQDIS 436

Query: 466 VYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            Y+ +++            K Q  +  I  L    +  S  +    ++      Q  I+ 
Sbjct: 437 FYDALKEAEKIPKLGRAAVKIQPFVTMIQSLRSEQRSFSVSELLDDVIERTGYVQDLIAE 496

Query: 521 FGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
             +E    I+ +DE +      + ++   +L   + E+             N + V +MT
Sbjct: 497 DTDESRARIENIDELITKATTYDKESENPTLGGFLEEVALVADIDTVDP--NQDHVLLMT 554

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE   V+L      +F                                      
Sbjct: 555 LHSAKGLEFSQVYLAGMEDGIFPSYMTIGSEDPGD------------------------- 589

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                   EE  RL YVG+TRA   L +    
Sbjct: 590 -------MEEERRLCYVGITRAMKDLTMTSVQ 614


>gi|312870522|ref|ZP_07730641.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3]
 gi|311093984|gb|EFQ52309.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3]
          Length = 762

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 115/766 (15%), Positives = 224/766 (29%), Gaps = 148/766 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   N             + ++   L            
Sbjct: 31  GAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFTNKAAKEMQERVGKLLGEGAQDIWVST 90

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L +        +     + +++   +K+   +   +  K   R     +  +
Sbjct: 91  FHSLCVRILRRDIEKLGYNRAFTIADTSEQRTLMKQVCAELNIDPKKFDPRSILSTISNA 150

Query: 123 TLASL--------------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             A L                     +       Y+E  + N  LDF+DLI+ T +L ++
Sbjct: 151 KNALLTPKDYAVKAGSDNNPHSMYSQVVARAYKLYQEQLEANQALDFDDLIMKTIELFEQ 210

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
              +           ++I +DE QDT+  Q++++  L + +            +  VGD 
Sbjct: 211 DPET---LEFYQDRFHYIHVDEYQDTNDAQYKLVHMLADKYE----------NICVVGDA 257

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA  + +L  +R               + L  ++RST +IL   ++V     
Sbjct: 258 DQSIYGWRGANIENILNFERDYP--------GAHTVMLEQNYRSTQNILDAANEVIKNNN 309

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +  +                     LW              + S+    +   +    
Sbjct: 310 GRKDKN---------------------LW-------TENGQGDKISYYQAQNEHDE---- 337

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A+ I   I                     D  +L R    + +I            +
Sbjct: 338 ---AQYIVSKIQEEHAK---------HGYHYNDFAILYRTNAQSRVIEETF----MKSSV 381

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      D   I+D++A    I++ +D +SF  ++ +P        +  +      
Sbjct: 382 PYTMVGGHKFYDRKEIRDILAYLTLIVNHQDSMSFSRVVNTPKRGIGLTSVEHLRDFAND 441

Query: 462 ETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
              ++ E  Q             +K     + I +L   A F S  +    IL      +
Sbjct: 442 NHWSLLEASQNIDIANTITARTRNKLADFGQLIKDLDKQADFLSITELTDQILERSGYNK 501

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-------LQELISELEQYPPTIKRAH 565
                   E     + LDEF + T   ++            L   +++L           
Sbjct: 502 MLQKDNSLEAQARQENLDEFKSVTQEYDKQHADDDVYNRQKLVNFLADLALVSDQD--DV 559

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                 V +MT+H AKGLE PVVFLV     +F                           
Sbjct: 560 DEQAPAVTLMTLHAAKGLEFPVVFLVGMEEGIFPLSRALLEDDELEEERRL--------- 610

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWY 682
                                     YVG+TRA  +L +    +       +++    + 
Sbjct: 611 -------------------------AYVGITRAKKKLYLTNAVSRLLYGRVQRNQPSRFV 645

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
           + +      +E         S+  D+  A + +    ++    R+ 
Sbjct: 646 EEISPELLEEEGGGMNNFGGSLPFDKRAALKPTYRSQQSKHHYRDA 691


>gi|149024889|ref|ZP_01836290.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72]
 gi|147929512|gb|EDK80506.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72]
          Length = 763

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDSDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|261337326|ref|ZP_05965210.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM
           20093]
 gi|270277699|gb|EFA23553.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM
           20093]
          Length = 878

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 113/738 (15%), Positives = 218/738 (29%), Gaps = 119/738 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  +      +     ++      L+         +  
Sbjct: 74  AAAEMRERLEALIGPEAQRMWVSTFHSACVRILRRNGESV-----GLKSGFSIYDTADC- 127

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TYKMFKST 123
             L     +      K    + I  +  D K +L   Q +       +        F   
Sbjct: 128 ERLIKLIASDLNVDIKRFTPRNILARISDYKNQLISWQTQLATYAADYKPGMRGYQFGRI 187

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   + A Y+   +    +DF+DLI+ T +LL+       +          IL+D
Sbjct: 188 GNVEELYAVMYAEYQHRLRMANAVDFDDLIMRTVELLQTDP---QVADYYRNRFRFILVD 244

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR--TLFAVGDEKQSIYSFHGAEPKRVLREK 241
           E QDT+  Q+ +IR L                 ++  VGD  QSIY+F GA+   +   +
Sbjct: 245 EYQDTNHAQYVLIRELAGIDQAKSGGAGGRPQASVTVVGDSDQSIYAFRGADISNIQDFE 304

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +               I L  ++RST  IL   + V +  E  +                
Sbjct: 305 QDFPN--------ARTIMLEQNYRSTQTILDAANAVIANNEGRKPKK------------- 343

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW  V S                        +A + A  IA  +  +     
Sbjct: 344 --------LWTAVGSGELITGYAA--------------DNAQLEAHWIAQELLRL----- 376

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                 +  ++  D+ ++ R    +  +            +           +   +KD 
Sbjct: 377 ----NTQEGVRFCDMAIMYRANAQSRALEEGL----IRAHVPYQLVGGTKFYERREVKDA 428

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN----- 475
           MA  + I++  D+++   +L  P           +     E   T ++ +++  +     
Sbjct: 429 MAYLQAIVNPADNVNVRRILNVPKRGLGARAEALVAAHADEIGGTFWQALEQADSIEGMT 488

Query: 476 -CGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
               +  +     +  L   A      P      +L      ++       +    ++ L
Sbjct: 489 ARTANPLRRFRDLMVSLRQFAAEHDSKPSAIVAQVLKESGLLEELRKSDDPQDASRVENL 548

Query: 530 DEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPV 587
            +  +     EQ +   SL   +        + +      +  +V +MT+HTAKGLE PV
Sbjct: 549 SQLQSVAAEYEQTTPDASLAGFLETTALVADSDQLPGEQEDTGKVTLMTLHTAKGLEYPV 608

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFL       F H                                         +   E 
Sbjct: 609 VFLTGMEQGTFPHS----------------------------------RAMEDDTELSEE 634

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YVG+TRA   L + + +  +   ++N+      + +        K+ +      + 
Sbjct: 635 RRLAYVGITRAKRHLYVTRAAVRAQWGQANEMLPSQFLDEIPDKLIDWKRREAGIERMRS 694

Query: 708 EWIAYEWSTHHPENTPLE 725
            W   +       +   +
Sbjct: 695 SWGDDDDEFGGWVDDEPQ 712


>gi|25011258|ref|NP_735653.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae NEM316]
 gi|23095682|emb|CAD46868.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 759

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 122/774 (15%), Positives = 242/774 (31%), Gaps = 139/774 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61
           G    ++  L ++  + +    V+  N             + ++A  L  A+Q       
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87

Query: 62  ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107
                     E  +   +  F       Q+ ++ + I + + D      +  L    +  
Sbjct: 88  HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D     K          +       Y+E  +++  +DF+DLI+ T  L  +     
Sbjct: 148 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++   +          ++ L  ++RST  IL   + V +  +N +  
Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW             +Q  +    +   +       A 
Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TI N++                KD  VL R    +  I            I     
Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     I+D++A    + +  D++SF  ++  P        + KI      +  ++
Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQNMSL 436

Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                    +   I  L       +  +    +L      +    + 
Sbjct: 437 LDASSNVMMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 496

Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571
             E    I+ ++EFL+ T   +          + L  L   L +          +    E
Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     VF                                 
Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA   L +   +  +   K++       + +    
Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 642

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             + + +    + +     + E  T   +   L++    ++   + ++  +L +
Sbjct: 643 LIQHQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQPQVTAQLQA 696


>gi|148985059|ref|ZP_01818302.1| methionine aminopeptidase [Streptococcus pneumoniae SP3-BS71]
 gi|147922757|gb|EDK73874.1| methionine aminopeptidase [Streptococcus pneumoniae SP3-BS71]
          Length = 624

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 27  QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 83

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 84  TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 132

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 133 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 166

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 167 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 208

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 209 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 257

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 258 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 317

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 318 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 377

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 378 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 435

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 436 IGMEENVFPLS----------------------------------RATEDSDELEEERRL 461

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 462 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 513


>gi|300863743|ref|ZP_07108674.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506]
 gi|300338250|emb|CBN53820.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506]
          Length = 794

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 113/691 (16%), Positives = 225/691 (32%), Gaps = 121/691 (17%)

Query: 8   SLNESYELIYK-----DLWPLPYFQVSDINKYVSLSMETGNP----------TILKKAQT 52
           +  E  E I K              +  +       + +G            T       
Sbjct: 79  AAREMKERIEKLFATGQAEAKYGKPLEALAPDEQARLRSGVYRNYIKPLWVGTFHSLCAR 138

Query: 53  LQQA----SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
           + +      Q +         S    +   +  K+I+T+++N      + +    +    
Sbjct: 139 ILRYDIEKFQDEKGRRWRKNFSIIDESDAQSLVKDIVTRQLNLDDKKFEPR--NVRYAIS 196

Query: 109 KIRDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             +++  + +  +    +    +       Y++A   N  LDF+DLI     L  + +  
Sbjct: 197 NAKNQGLSPREVELEQPNYRGKVIADAYNLYQDALAANNGLDFDDLIRVPVQLFSQNES- 255

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQS 225
             +     Q+ +HIL+DE QDT+ +Q+++IR L  +    +  T+   R++F VGD  Q+
Sbjct: 256 --VLGYWHQKFSHILVDEYQDTNRVQYDLIRLLATNNEDPQTFTNWERRSIFVVGDVDQA 313

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IYSF  A+ K +L  ++       +   + ++++L  ++RS  +IL   + +        
Sbjct: 314 IYSFRMADFKILLDFQKDFGDGLADDDTR-TMVKLEENYRSRDNILHAANALIENNTERI 372

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 T                                +        D + +       
Sbjct: 373 DKVLRPTR----------------------------GEGEPICVERADDEIQE------- 397

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  +   I+ ++  +          ++  D  +L R    +             + I   
Sbjct: 398 AEFVTNEITGLVRKNP--------ELKWGDFAILYRTNAQSRNFEECL----VRWSIPYN 445

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TE 464
                   D   +KD++A  R I++  D +S + ++ +P     +    ++     +   
Sbjct: 446 LVGGLKFYDRKEVKDVLAYLRLIVNPADTVSLLRIINTPRRGIGKATTDRLVQAAQQLNI 505

Query: 465 TVY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            ++      E +   A          ++ I +        S  +    IL       +  
Sbjct: 506 PLWDILVDEESVNTLAGRTAKPIIEFMRTIRKWQEEVANTSASEVVQGILEESGYIDELK 565

Query: 519 SRFGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRI 574
            +  +E  D    + E  N   + E+ +     +L + L     +          + V +
Sbjct: 566 KQGTDEAEDRIENIKELYNAVQQFEEENAEE-AKLENFLASAALSSDMDSMKEEESRVSL 624

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE PVVFLV     +  H       I                          
Sbjct: 625 MTLHAAKGLEFPVVFLVGMEQGLLPHFRSLDDPI-------------------------- 658

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                     EE  RL YVG+TRA ++L I 
Sbjct: 659 --------ALEEERRLCYVGITRAQERLFIT 681


>gi|291531717|emb|CBK97302.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Eubacterium siraeum
            70/3]
          Length = 1235

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 153/964 (15%), Positives = 300/964 (31%), Gaps = 170/964 (17%)

Query: 87   QEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
            +   +    + E  LKK+ ++           K   +  A   L    +  Y E K++  
Sbjct: 301  KAHREGVKSVFEKYLKKTCEKITSFESDM--DKSLPAVTALKNLVLRFDKAYCEEKQRRN 358

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
              DF D       +L +         +     + I++DE QD++ +Q+E+ + LTE+   
Sbjct: 359  CADFSDAERGAYRMLCENGEKV----RERSAFSLIIVDEFQDSNELQYEIFKMLTEN--- 411

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                    + L+ VGD KQSIY F GA+P+      +            F  + L  +FR
Sbjct: 412  -------KQGLYFVGDIKQSIYGFRGAQPEVFSSICK---------SDDFDKLPLNENFR 455

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            S   ++  ++ +F      +    D     R             L   +    DS    +
Sbjct: 456  SNRCVIDGINTLFDRMMTEENGGVDYAENGR-------------LICGLEKDSDSPIANE 502

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
             ++         ++++    A  IA  I  MI       + K R     D  +++R  K+
Sbjct: 503  DKTEVCIVSEKDRKNAVVTEAAYIAARIKQMIAQGYKVGSDK-RPCTEDDFAIIMRSPKN 561

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
               I      L  +  ++V  + +  L D   I+ +++L + I    +D     +L SPL
Sbjct: 562  --RIADYVNVLTAN-GLNVTYSQKASLLDRPEIRLMLSLLKVINDPYNDTELAKVLMSPL 618

Query: 446  FNFSEDDIFKI--------------------------------CTQRHETETVYEYIQKF 473
            + F+ DD+ ++                                  ++     V + ++ +
Sbjct: 619  YCFTADDMARLRTGTFGFDISKIRAECADELEKYCLGTKEIVGMKRKPLYSCVMQAVRGY 678

Query: 474  ANCGISKFQH-------------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-IS 519
                  K                 +  +    + A   SP +    I       +   + 
Sbjct: 679  DTSEYEKLHELTKDIKPDAKCAVFVNDLDSFRNAATASSPQELIRSIYDRISADELLSVG 738

Query: 520  RFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                     L+  +++           +L +LI  LE          +  H  V+IM+ H
Sbjct: 739  DDPATRQANLELLVSYAREYSDYKDGGTLGDLIFNLENMGGLTAAQTAGGHG-VKIMSTH 797

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGL+ PVVF+ +  S      +   + I                SK ++       + 
Sbjct: 798  MSKGLQFPVVFVANCASSFNDDDYTGDVVISEEYAVASKSVDISTMSKIQSPAYHAAAQE 857

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK---------------KSNQRTWYD 683
            +KK    E  RLLYV  TRA ++LI   + + + ++               K N  ++  
Sbjct: 858  VKKQLASEEMRLLYVAATRAENKLIFTANISKACDEYMSVLDVNRAGKKVGKCNGSSYLS 917

Query: 684  MV--------------YDSFHNDERVKKIKLTNSINKDEW--------IAYEWSTHHPEN 721
             +                   +   V+ I    +   DE            E +  + ++
Sbjct: 918  WLIEALSAECDKVNDMQSGIIDYGDVRYIFYPLAYGGDEHSLTIPALNTGAEKADEYTDD 977

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------ 775
               +            ++ KKL +    +         +  +       ++         
Sbjct: 978  KNNDSTGIAVDEQFRSELEKKLNAAYAYEPLTKISAKFTATELAANLREKNGEENYGLFI 1037

Query: 776  ------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                              RG   HKL++ I                   A      E  +
Sbjct: 1038 GKPSFLTENNTGKLSGKRRGDAYHKLMEHIPFEKILSEDEISDYIKNSTAGFLDKAEQNS 1097

Query: 824  L-LLSITRLLENPMMTTAMSCD----SYSEVSVSGKIN----------------CPKKDI 862
            +    I     N +    +  D     Y E  +  +++                    + 
Sbjct: 1098 INAGDIAGFYGNDVAKRIVKADKNGKLYREYPIFHRLDTQCYDPAIFGADSREMLEGAEP 1157

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
             + G  D   I    I + +YKT      + +     +  QL IY++ L+  +    +  
Sbjct: 1158 YVQGIADMFFIEDDGIVLVDYKTDKT--DDEQKYKDDYKLQLDIYKEALEKEFSV-PVKQ 1214

Query: 923  LLIY 926
            ++IY
Sbjct: 1215 MIIY 1218


>gi|22300001|ref|NP_683248.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1]
 gi|22296186|dbj|BAC10010.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1]
          Length = 773

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/646 (17%), Positives = 205/646 (31%), Gaps = 114/646 (17%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +    +  +A  +   YE A  KN  LDF+DLI+ T  LL++R           Q+  
Sbjct: 195 AQEQRSPAGRVAAEVYRCYEAALAKNNALDFDDLILRTVHLLQQRPER---LDYWHQQFQ 251

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRV 237
           HIL+DE QDT+  Q++ IR L  +    +   +   R++F VGD  QSIYSF  A+   +
Sbjct: 252 HILVDEYQDTNRTQYDFIRLLATNGTPPQEFRNWGNRSIFVVGDVDQSIYSFRCADFTIL 311

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           +  ++    R  +   + ++I+L  ++RS A+IL   + +              T     
Sbjct: 312 MNFQQDFGDRLPDQQTR-TMIKLEENYRSVANILQAANYLIEHNSERIDKVLRPTKAPG- 369

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                                                      + +  A  I   I  + 
Sbjct: 370 ----------------------------------PPIHCECCDTETDEAYFITQQIKALG 395

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                         Q     +L R    +               I           +   
Sbjct: 396 SQSLEP--------QWGRFAILYRTNAQSRPFEEAL----VRANIPYTVVGGLKFYERKE 443

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYI 470
           +KD++A  R + + +D +S   ++  P     +  + ++         +++      E +
Sbjct: 444 VKDILAYLRLLQNPQDTVSLRRIINIPRRGIGKTSLDRLSDAAQTLGISLWDLIADTESM 503

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--- 527
              A       Q  +  I  L  +       +    ++     R++  +   +E ++   
Sbjct: 504 TPLAGRASRAVQQFVTLITRLRSLVDDIELPELVKTVIEETGYRRELENEGTDESLERLQ 563

Query: 528 VLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L E +N   +  E N  +SL + ++                   V +MT+H AKGLE P
Sbjct: 564 NLMELVNAAQQFSEDNEGASLSDFLNSSALASDLDT--LQEGEGVVSLMTLHAAKGLEFP 621

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VVFLV     +F +       +                                    EE
Sbjct: 622 VVFLVGMEQGLFPNFRSLNDPM----------------------------------ALEE 647

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YVG+TRA ++L +    +                      ++ +    LT    +
Sbjct: 648 ERRLCYVGITRAQERLFLTFAQSR---------------RLYGGREDTMPSQFLTELPPE 692

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                 +        T +      K      ++  ++  P+  +  
Sbjct: 693 LLTGNVQRRPPRTAVTTVSPSRLSKAAASPWRVGDRILHPVYGEGE 738


>gi|15900955|ref|NP_345559.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4]
 gi|111657604|ref|ZP_01408340.1| hypothetical protein SpneT_02001214 [Streptococcus pneumoniae
           TIGR4]
 gi|14972562|gb|AAK75199.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4]
          Length = 763

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 103/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          S+   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNSQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDSDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|307708772|ref|ZP_07645234.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261]
 gi|307615138|gb|EFN94349.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261]
          Length = 763

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 100/592 (16%), Positives = 192/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPQ- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANMQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMVLDLREQLDQLNITELVEAVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTSDEPEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                          +   EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RAAEDQDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|222153135|ref|YP_002562312.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J]
 gi|222113948|emb|CAR42197.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J]
          Length = 755

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/623 (17%), Positives = 197/623 (31%), Gaps = 124/623 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +  L    +    + D            +   +       Y+E  +++  +DF+DLI+ T
Sbjct: 137 RSILGTISNAKNDLLDEMAYEAQASDMYS--QIVARCYKAYQEELRRSEAMDFDDLIMMT 194

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L  K      +     Q   +I +DE QDT+  Q+++++ L   F          + +
Sbjct: 195 LRLFDKNPE---VLSYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------QNI 241

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD  QSIY + GA+ + +L  ++   K          ++ L  ++RST  IL   + 
Sbjct: 242 CVVGDADQSIYGWRGADMQNILDFEKDYPK--------AKVVLLEENYRSTKTILQAAND 293

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V    +N +                        LW             ++  +    D  
Sbjct: 294 VIRYNKNRKEKK---------------------LW-------TQNDQGEKIVYHRANDER 325

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +       A  IA TISNM           +     KD  VL R    +  I       
Sbjct: 326 DE-------AVFIASTISNM---------CLELGKSFKDFAVLYRTNAQSRTIEEAF--- 366

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                I               I+DL+A    + +  D++SF  ++  P        + K+
Sbjct: 367 -LKSNIPYTMVGGTKFYSRKEIRDLIAYLNIVANPSDNISFERIVNEPKRGVGPGTLEKL 425

Query: 457 C-TQRHETETVYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                    ++ E                    +   +  L       S  +    +L  
Sbjct: 426 RLYAYDSQLSLLEASSNLFLSPLKGKAAQAITDLATLLTSLRQDLDHLSITELAEALLEK 485

Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRN--------EQNSYSSLQELISELEQYPP 559
               +Q   +   E    I+ ++EFL+ T           +++   +L   +++L     
Sbjct: 486 TGYLEQLKIQNTLESQARIENIEEFLSVTKNFDDNQSPTNDESGIDTLGRFLNDLALIAD 545

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
           T          EV +MT+H AKGLE PVVFL+     VF                     
Sbjct: 546 TD--DDKTESAEVTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------ 585

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                                +   EE  RL YVG+TRA   L +   +  +   K+N  
Sbjct: 586 ----------------RASEDQDELEEERRLAYVGITRAEQILFLTNANTRTLFGKTNYN 629

Query: 680 TWYDMVYDSFHNDERVKKIKLTN 702
                + +   +    + +    
Sbjct: 630 RPSRFLREISEDLLAFQGLARPA 652


>gi|270289913|ref|ZP_06196139.1| recombination helicase AddA [Pediococcus acidilactici 7_4]
 gi|270281450|gb|EFA27282.1| recombination helicase AddA [Pediococcus acidilactici 7_4]
          Length = 1238

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 123/860 (14%), Positives = 277/860 (32%), Gaps = 97/860 (11%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFSL------LSSFFLTQKFTPQKNIITQEINKK 92
            ++        +   L+            +L           L +   P+      E    
Sbjct: 246  LQKAAANFQAEVAGLKTVIDQFDQPNWDALQQAMVNFKFAQLPRGKKPEVQEFNLEAKPL 305

Query: 93   SPDLKEKLKKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
              + K +     + + K+++           +  L  + + +  +  + + K     LDF
Sbjct: 306  RNEFKAEFNGLVERYFKLKNDQLIAIFKDAREIMLKLIEVQQQFSDRFLQEKLTRRSLDF 365

Query: 150  EDLIINTNDLLKK-RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
             DL      +L+   +    +R    ++ N +++DE QD + +Q  ++ ++  +      
Sbjct: 366  SDLEHFALQILQNQSEEGQAVRRNFQEKFNEVIVDEYQDINPLQETILTAVARE------ 419

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                P  +F VGD KQSIY+F  A+P   + + R  ++    +GQ    I L  +FRS  
Sbjct: 420  ---DPGNMFMVGDVKQSIYAFRMADPSLFISKSRRFKQ----SGQPDERIILAENFRSMQ 472

Query: 269  DILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            ++    + +F+   +     ++ D+   ++  +              +     ++    Q
Sbjct: 473  NVDDFTNLIFNQIMDQAVGEIAYDADAQLKFGAKYYPAEVQNDTEVLLFDDQQNENTADQ 532

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---IFSNGKKRVIQAKDILVLVRKR 383
            E      D    +       + IA  I  +    T        + R ++  DI +L    
Sbjct: 533  EPGAIITDKNDGQL------QMIAQRIKRLFADQTEVFDRDTQEMRPLKYSDIALLHSTG 586

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +   I    +     Y I +  ++         +  +MAL + I +   D+    +L+S
Sbjct: 587  NNNLNIVDTFK----KYGIPIEVSNAQDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRS 642

Query: 444  PLFNFSEDDIFKICTQRHETETVY-----------EYIQKFANCGISKFQHVIKYIHELI 492
            P+    E+++  +   +                  +Y  +F      K    +  +    
Sbjct: 643  PIVGLDENELAFLRISKKNGHYFESVLYFQNEFKIDYQNEFQANLKRKIDQFLAQLQHFR 702

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
             ++Q C+  D    I               G +  + L    +     E++S+  L + +
Sbjct: 703  KLSQQCTLVDLLWEIYQETGYLDYVGGMPDGPQRQNNLHALYDRAQSYEESSFKGLFQFV 762

Query: 552  SELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +E+     K         +   V++MT+H++KGLE P+VFL+D      +     +  
Sbjct: 763  RFVEKMREKNKDLAENPVVTDTEAVKLMTIHSSKGLEFPIVFLIDADHGFNNSDTKGRYV 822

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +         +  ++ + +      + +I   ++    E  R+LYV +TRA  +LI+   
Sbjct: 823  LDRDAGMGITVKDFVHRLEVDTMQKNWIIDVRQRKMLAEELRVLYVALTRAQQKLIVTGA 882

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
               +           D         ER K     + I            ++PE +  + +
Sbjct: 883  LKAATPTLEKWAQAADTGELLLPEAERGKAKNFLDWIGMAIMRVPSVMENYPEVSSRKLD 942

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
                  +                           +    + +L +    +    +G    
Sbjct: 943  SFAGVEVK--------------------------LKVVNRADLLAGQRSDTGIEQGTP-- 974

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL--LLSITRLLENPMMTTAMSCDS 845
              L+ +    +    + I +          A +      +  I R+ ++P          
Sbjct: 975  PTLEKMDVNSDINDADQIRAILNFKYHDIEATQTTAYQSVSEIKRVFDDPD--------- 1025

Query: 846  YSEVSVSGKINCPKKDIIIS 865
                 +    +   +D  I 
Sbjct: 1026 ----KLEMDFSAVDRDQKIR 1041



 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 81/271 (29%), Gaps = 22/271 (8%)

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +            +    +          +  H  E T     +++ ++      P KL 
Sbjct: 969  IEQGTPPTLEKMDVNSDINDADQIRAILNFKYHDIEATQTTAYQSVSEIKRVFDDPDKLE 1028

Query: 745  SPIKNDINEPYILNPS---TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                + ++    + P      D        S +S  +    G   H +LQ +       +
Sbjct: 1029 MDF-SAVDRDQKIRPQKRFVTDQLMTPRFMSEVSQPKPTEIGTATHLILQQLDLREPVTQ 1087

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMS--CDSYSEVSVSGKINC 857
                             +     +   SI    E+ +    ++     + E + S  +  
Sbjct: 1088 AVIKDKIRELVMNQVLEEAVAKRIRINSILDFFESELGQLMLAHPEQVHREEAFSLLLPA 1147

Query: 858  PK--------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLS 905
                      +D++I G ID        + + +YKT   +P   +     +   +  Q++
Sbjct: 1148 KGLFPNVVGNQDVLIHGIIDAYFELDGRVILLDYKTDFVLPGSPQQGIQKVIDRYQGQVN 1207

Query: 906  IYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935
            +Y + L +    K +    L  +S  K+  I
Sbjct: 1208 LYAQALSNIL-GKPVNEKYLYLLSIGKLVEI 1237


>gi|149006240|ref|ZP_01829952.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP18-BS74]
 gi|307127381|ref|YP_003879412.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B]
 gi|147762017|gb|EDK68979.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484443|gb|ADM91312.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B]
 gi|332075042|gb|EGI85513.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17545]
          Length = 763

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|149003797|ref|ZP_01828629.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP14-BS69]
 gi|225861053|ref|YP_002742562.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650760|ref|ZP_04525012.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI
           1974]
 gi|237822347|ref|ZP_04598192.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298230846|ref|ZP_06964527.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255795|ref|ZP_06979381.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502897|ref|YP_003724837.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303254202|ref|ZP_07340314.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455]
 gi|303259750|ref|ZP_07345725.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293]
 gi|303262925|ref|ZP_07348860.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264888|ref|ZP_07350804.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397]
 gi|303266868|ref|ZP_07352746.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457]
 gi|303268905|ref|ZP_07354690.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458]
 gi|147758243|gb|EDK65245.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP14-BS69]
 gi|225727044|gb|ACO22895.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238492|gb|ADI69623.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301802021|emb|CBW34750.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
           INV200]
 gi|302598873|gb|EFL65907.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455]
 gi|302635902|gb|EFL66402.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638955|gb|EFL69415.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293]
 gi|302641523|gb|EFL71885.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458]
 gi|302643566|gb|EFL73835.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457]
 gi|302645576|gb|EFL75807.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397]
 gi|327389355|gb|EGE87700.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04375]
 gi|332075421|gb|EGI85890.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41301]
          Length = 763

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|182684161|ref|YP_001835908.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14]
 gi|182629495|gb|ACB90443.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14]
          Length = 763

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|15903039|ref|NP_358589.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae R6]
 gi|116515714|ref|YP_816449.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39]
 gi|15458610|gb|AAK99799.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6]
 gi|116076290|gb|ABJ54010.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39]
          Length = 763

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|167760475|ref|ZP_02432602.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC 35704]
 gi|167661841|gb|EDS05971.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC 35704]
          Length = 743

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/616 (17%), Positives = 198/616 (32%), Gaps = 117/616 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE+  + N  LDF+DL++ T  L +     A +     +   +I++DE QDT+ 
Sbjct: 170 AEVYEEYEKQLRANNALDFDDLLVKTVQLFQT---QADMLEYYQERFRYIMVDEYQDTNT 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+E+IR L   +          R L  VGD+ QSIY F GA  K +L  + + +     
Sbjct: 227 VQFELIRLLASKY----------RNLCVVGDDDQSIYKFRGANIKNILNFEHVFE----- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST++IL   + V       +  +                     L
Sbjct: 272 ---DAKVIKLEQNYRSTSNILNAANAVIRNNRGRKDKT---------------------L 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + ++  +  +  +  +       A  I   I   +             
Sbjct: 308 W-------TDNGDGEKLEFRQFDTAYDE-------AEYIVGDIREHVDRGE--------- 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  +L R    + +          +  I               IKDL++  + + +
Sbjct: 345 CTYNDNAILYRTNAQSRIFEEKF----VNANIPYKIVGGINFYARREIKDLLSYLKTVDN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKFQHV 484
            +DDL+   ++  P        I ++           YE ++          G SK +  
Sbjct: 401 GQDDLAVRRIINVPKRGIGLTSINRVQEYAVRHEVGFYEALRAVDLIPNIGRGASKLESF 460

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           +  I      AQ  S       I+      +   +    E    I+ +DE ++  +  E 
Sbjct: 461 VALIEHFKTDAQEMSISRLMKEIIEETGYVESLEAEDSEEAEARIENIDELMSKIVAYED 520

Query: 542 -----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                N  S+L   + E+         +   N + V +MT+H+AKGLE P V+L      
Sbjct: 521 TCEEMNEPSTLSGFLEEVALVADID--SLDENSDYVVLMTLHSAKGLEFPHVYLAGLEDG 578

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F                                     I        EE  RL YVG+T
Sbjct: 579 IFPSYMT--------------------------------ITADDPEEVEEERRLCYVGIT 606

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA   L +    +     ++        + +          +         +  AY  + 
Sbjct: 607 RAEKALTLTCARSRMIRGETQYNKMSRFLKEIPMELLSTGAVFEKEKEEPAKQAAYMQAR 666

Query: 717 HHPENTPLEREETIKQ 732
                      +  +Q
Sbjct: 667 QAFRTKAFTAPKPARQ 682


>gi|76787976|ref|YP_329845.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909]
 gi|77407064|ref|ZP_00784070.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B]
 gi|77413012|ref|ZP_00789214.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515]
 gi|76563033|gb|ABA45617.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909]
 gi|77160910|gb|EAO72019.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515]
 gi|77174333|gb|EAO77196.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B]
          Length = 759

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/774 (15%), Positives = 242/774 (31%), Gaps = 139/774 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61
           G    ++  L ++  + +    V+  N             + ++A  L  A+Q       
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87

Query: 62  ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107
                     E  +   +  F       Q+ ++ + I + + D      +  L    +  
Sbjct: 88  HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D     K          +       Y+E  +++  +DF+DLI+ T  L  +     
Sbjct: 148 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++   +          ++ L  ++RST  IL   + V +  +N +  
Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW             +Q  +    +   +       A 
Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TI N++                KD  VL R    +  I            I     
Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     I+D++A    + +  D++SF  ++  P        + KI      +  ++
Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQNMSL 436

Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                    +   I  L       +  +    +L      +    + 
Sbjct: 437 LDSSSNVMISPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 496

Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571
             E    I+ ++EFL+ T   +          + L  L   L +          +    E
Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     VF                                 
Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA   L +   +  +   K++       + +    
Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 642

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             + + +    + +     + E  T   +   L++    ++   + ++  +L +
Sbjct: 643 LIQYQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQPQVTAQLQA 696


>gi|148998353|ref|ZP_01825795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70]
 gi|307067730|ref|YP_003876696.1| superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200]
 gi|147755750|gb|EDK62795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70]
 gi|306409267|gb|ADM84694.1| Superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200]
          Length = 763

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|329116495|ref|ZP_08245212.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD
           2020]
 gi|326906900|gb|EGE53814.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD
           2020]
          Length = 764

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 118/765 (15%), Positives = 239/765 (31%), Gaps = 139/765 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--------- 56
           G    ++  L ++  + +    V+  N             +  +A  L  A         
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRDRALALNPATIDTLIATF 87

Query: 57  ----SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIR 111
                +    E      +  F       Q+ ++ + +   + D K+  ++         +
Sbjct: 88  HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKSLNLDPKKWSERSILGTISNAK 147

Query: 112 DRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +     K+F++  A +   +       Y+E  +++  +DF+DLI+ T  L         +
Sbjct: 148 NDLLDEKIFEAQAADMYSQIVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDTN---KDV 204

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY +
Sbjct: 205 LAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIYGW 254

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +L  ++              ++ L  ++RST  IL   + V    +N +    
Sbjct: 255 RGADMQNILDFEKDYP--------SAKVVLLEENYRSTKTILQAANDVIKNNQNRRDKK- 305

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW           + +Q  +    D   +       A  I
Sbjct: 306 --------------------LW-------TQNADGEQIVYYRANDEHDE-------AVFI 331

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A TISNM   +             KD  VL R    +  I            I       
Sbjct: 332 ASTISNMCQGNEK---------NFKDFAVLYRTNAQSRTIEEAF----LKSNIPYTMVGG 378

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
                   I+D+++    I +  D++SF  ++  P        + K+         ++ +
Sbjct: 379 TKFYSRKEIRDVISYLNIIANPSDNISFERIVNEPKRGVGPGTMEKLRLFAFQNEMSLMD 438

Query: 469 YIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                               +   + +        +  +    ++      +    +   
Sbjct: 439 ASSNLLMSPLKGKAAQSIMDLANLLLDFRLKLDNLTITELTEQLIDQSGYLEALRIQNTL 498

Query: 524 E---VIDVLDEFLNFTLRNE---------QNSYSSLQELISELEQYPPTIKRAHSANHNE 571
           E    I+ L+EF++ T   +         ++    L   +++L     T           
Sbjct: 499 ESQARIENLEEFISVTKNFDDNQNNVEEDESGLDRLGRFLNDLALIADTDNGDADVAE-- 556

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     VF                                 
Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                     +  EE  RL YVG+TRA   L +   +  +   KS+       + +    
Sbjct: 587 ----RASEDPAELEEERRLAYVGITRAEQVLFLTNANTRTLFGKSSYNRPTRFLREISDQ 642

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
               + +    + +     + + ++   +   L +    ++   +
Sbjct: 643 LLSYQGLARPANSSFGVRYSQQKTSEFGQGMSLSQAIQARKSQAQ 687


>gi|298492943|ref|YP_003723120.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708]
 gi|298234861|gb|ADI65997.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708]
          Length = 776

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 104/604 (17%), Positives = 205/604 (33%), Gaps = 101/604 (16%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139
           K I+T+++N  S   +   K  +      +++  + + F+    +    +   + + Y++
Sbjct: 160 KEIVTKDLNLDSKKFEP--KSVRYAISNAKNQGFSPEEFEQEQPNYRGRVIAEVYSLYQD 217

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
               N  LDF+DLI+    L ++ +    +         HIL+DE QDT+  Q+++I+ L
Sbjct: 218 KLAGNNALDFDDLILIPTRLFRQNE---QVLGYWHGRFCHILVDEYQDTNRTQYDLIQLL 274

Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
             +    K+  +   R++F VGD  QS+YSF  A+   +L  ++       +   + +++
Sbjct: 275 VTNDENRKSEWNWENRSVFVVGDADQSVYSFRMADFTILLEFQQNFGDGLEDDDTR-TMV 333

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RS  +IL   +++             +T                          
Sbjct: 334 KLEENYRSCENILQAANELIENNTQRIDKILKATR------------------------- 368

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                 ++       D + +       A  +      +              +   +  +
Sbjct: 369 ---DAGEEIHCYKAEDEIEE-------AAFVINQTRTL--------EHHNPELNWGNFAI 410

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +         L   Y+I           D   IKD++A  R I +  D +S +
Sbjct: 411 LYRTNAQSRPFED----LLVKYQIPYTVVGGMKFYDRKEIKDIVAYLRAINNPADTVSLL 466

Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYIHEL 491
            ++ +P     +  I  +     +   T++E       +   A           K I + 
Sbjct: 467 RVINTPRRGIGKATIEALVNASQQLGTTLWEILTDETSVNTLAGRSAKSVNGFAKIIQKW 526

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQ 548
                     +    IL      Q   ++  +E       ++E  N   + ++ +     
Sbjct: 527 QEQISKIPGSEILQGILEDSGYVQDLENQGTDEADNRIQNVNELYNAISQFQEENEGDDI 586

Query: 549 ELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            L   L+    +            V +MT+H +KGLE PVVFLV     +F         
Sbjct: 587 SLQGFLQSAALSSDLDNLKEGKTTVSLMTLHASKGLEFPVVFLVGLEQGLFPG------- 639

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                             ++ EE  RL YVG+TRA ++L +C  
Sbjct: 640 ---------------------------YRSLQDPASLEEERRLCYVGITRAQERLYLCHA 672

Query: 668 SNTS 671
               
Sbjct: 673 RERR 676


>gi|17231987|ref|NP_488535.1| DNA helicase II [Nostoc sp. PCC 7120]
 gi|17133631|dbj|BAB76194.1| DNA helicase II [Nostoc sp. PCC 7120]
          Length = 772

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/618 (17%), Positives = 205/618 (33%), Gaps = 103/618 (16%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139
           K I+T+++N      + +    +      +++  + + F+    +    +   +   Y++
Sbjct: 158 KEIVTKQLNLDDKKFEPR--SVRYAISNAKNQGLSPQEFEKDQPNYRGRVIADVYNRYQD 215

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
              +N  LDF+DLI+    L ++ +    +     ++  HIL+DE QDT+  Q+++IR L
Sbjct: 216 KLAENNALDFDDLILIPTRLFQQNE---QVLGYWHRKFCHILVDEYQDTNRTQYDLIRLL 272

Query: 200 TEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           T +    K+      R++F VGD  QSIYSF  A+   +L  +        +   + +++
Sbjct: 273 TTNGEEKKSAWEWQNRSVFVVGDADQSIYSFRMADFTILLDFQNQFGDGLPDEDTR-TMV 331

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RS  +IL V +++              T                          
Sbjct: 332 KLEENYRSCENILQVANELIENNTQRIDKVLKPTR------------------------- 366

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                 ++       + L +       A  +   I  +          +   +      +
Sbjct: 367 ---GAGEEIYCHKADNELEE-------ADFVIRQIRTL--------EHQNPELDWGSFAI 408

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +         L    +I           D   IKD++A  R I +  D +S +
Sbjct: 409 LYRTNAQSRPFEE----LLVRNQIPYTVVGGMKFYDRKEIKDVIAYLRAISNPSDTVSLL 464

Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYE------YIQKFANCGISKFQHVIKYIHEL 491
            ++ +P     +  I  +     +   T++E       +   A        +  K I+  
Sbjct: 465 RVINTPRRGIGKATIDNLINASQQLGTTLWEILSDETSVNTLAGRSAKGVNNFAKMINRW 524

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRN-EQNSYSSL 547
                     +    IL      Q   S+  +E  D    + E  N  L+  E+N   SL
Sbjct: 525 QEQIATAPVTEIVMGILEDSGYVQDLQSQGTDESEDRIQNVQELYNAVLQFQEENEDVSL 584

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +                    V +MT+H +KGLE PVVFLV     +F         
Sbjct: 585 TAFLQSTALSSDLDN--LKEGQTAVSLMTLHASKGLEFPVVFLVGLEQGLFPGYRSLSDP 642

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                             +  EE  RL YVG+TRA ++L +   
Sbjct: 643 ----------------------------------AALEEERRLCYVGITRAQERLYLSFA 668

Query: 668 SNTSNEKKSNQRTWYDMV 685
                            +
Sbjct: 669 RERRLYGSREPAMRSQFL 686


>gi|301800058|emb|CBW32653.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
           OXC141]
          Length = 763

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDSDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|149279369|ref|ZP_01885500.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39]
 gi|149229895|gb|EDM35283.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39]
          Length = 747

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/649 (15%), Positives = 208/649 (32%), Gaps = 115/649 (17%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            +       L   +   Y +   K   +DF+DL+  TN LLK       +  K  Q+  +
Sbjct: 141 AEDVANKRPLLGVIYETYTKRCFKAGAMDFDDLLFKTNVLLKNHPD---VLNKYQQKFKY 197

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +++DE QDT+  Q+ +++ L   +          + +  VGD+ QSIY+F GA  + +L 
Sbjct: 198 LMVDEYQDTNFSQYTIVKKLAAAY----------QNICVVGDDAQSIYAFRGANIQNILN 247

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +R              + +L  ++RST +I+ V + + +  +N    +  S        
Sbjct: 248 FERDYP--------DLKVYKLEQNYRSTQNIVEVANSIIANNKNQLEKNVFS-------- 291

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                              D++   + +   ++ D         I+A  I          
Sbjct: 292 -------------------DNESGDRIKVQRAFTD----NEEGKIVAEAIVQE------- 321

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                    +     D  +L R    +  +    R L     +               IK
Sbjct: 322 ------RSSKGYNYNDFAILYRTNAQSRAMEEALRKL----NVPYKIYGGLSFYQRKEIK 371

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGI 478
           DL+A  R   +  D+ +   ++  P     +  + K +        T+++ I        
Sbjct: 372 DLIAYFRLTFNPADEEAIKRVINYPKRGLGDTTVEKILVAADQHDTTMWQVICNPQQYIQ 431

Query: 479 SK----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
            +           I      A+    ++    I       ++  S   +E     + + E
Sbjct: 432 GRIANQLNDFAVMIQSFAAEAKKLDAYETALYIAQHSGILKELHSDTTDEGRGRHENVQE 491

Query: 532 FLNFTLRN---EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            LN        E     SL   + ++       K     N + V +MT+H++KGLE   V
Sbjct: 492 LLNGIKEFGEREDIEDRSLAVFMQDIALLTNDDKGGDDKNKDTVSLMTIHSSKGLEFKNV 551

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F+V     +F  +                                       ++  EE  
Sbjct: 552 FVVGLEENLFPSQMSLNS----------------------------------RTDLEEER 577

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI-KLTNSINKD 707
           RL YV +TRA  +L +   ++               + +       ++ +    +++++D
Sbjct: 578 RLFYVAVTRAEKKLTLTYATSRYRWGTLTNCEPSRFIDEINARYLEIEVVKPAKSTLSED 637

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
            + +   S     +T  + +            P+   + +    + P  
Sbjct: 638 SFQSERKSWSQQRDTFSKPKPASASGSSTSTAPRPKTTTMLPKAHVPTP 686


>gi|227487771|ref|ZP_03918087.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227542414|ref|ZP_03972463.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227092273|gb|EEI27585.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227181612|gb|EEI62584.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 735

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 115/626 (18%), Positives = 199/626 (31%), Gaps = 132/626 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +   +   Y+E  ++   LDF+DLI     + ++      +     +   H+L+DE Q
Sbjct: 164 HKVIGQVYGFYQERLRRANALDFDDLIGEVVRIFREHPD---VTAYYRRRFRHVLVDEYQ 220

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+E I +L      G         L  VGD  QSIY+F GA  + +   +R    
Sbjct: 221 DTNHAQYEFISALVGKDGTG---------LCVVGDADQSIYAFRGATIRNIREFERDFPN 271

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    + I L  ++RST +IL+  + V S  E+    +                  
Sbjct: 272 --------ATTILLEQNYRSTQNILSAANAVISHNEHRGKKN------------------ 305

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW       D    P+   + +              AR IA TI +           
Sbjct: 306 ---LW------TDQGAGPKIIGYVA--------DREEDEARFIASTIDD----------- 337

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
             R +   ++ V+ R    + +I  +         I           +   ++D++A  R
Sbjct: 338 --RNLPYNEVAVMYRTNAASRVIEDVF----IRTGIPYRVVGGTRFYERKEVRDIIAYLR 391

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGIS 479
            + + +D++S   ++ +P     +  +  +      E  ++YE ++           G +
Sbjct: 392 VVDNPDDEVSLRRIVNTPRRGIGDKALAFVTAFASRENISLYEAMRHVDEVDYLGARGRN 451

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                +  + EL   A      D   LI      R +            +D L+E + + 
Sbjct: 452 AIAKFVAMMEELR--AGTQEVGDLINLITDVSGYRDELEKSKDPRDEARLDNLNELVAYA 509

Query: 537 LRNEQ-----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
               Q     +   S+Q  +  +       +    A    V +MT+HTAKGLE P VFL 
Sbjct: 510 RDFAQQARANDEDDSVQAFLERVSLVADADQI-PDAGQGVVTLMTLHTAKGLEFPYVFLP 568

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                 F H                                            EE  RL 
Sbjct: 569 GWEEGQFPHMRSLG----------------------------------NTEEIEEERRLA 594

Query: 652 YVGMTRASDQLIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           YVG+TRA  QL I          +  T+ E +        ++               ++ 
Sbjct: 595 YVGITRARKQLFISRALLRIAWGNPQTNPESRFLGDIPSSLIEWEREEPAYGVGGGYSSY 654

Query: 704 INKDEWIAYEWSTHHPENTPLEREET 729
              D WI           +      +
Sbjct: 655 GGNDGWIGGPRRVKKKPASSQSVPAS 680


>gi|197302046|ref|ZP_03167107.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC
           29176]
 gi|197298855|gb|EDY33394.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC
           29176]
          Length = 767

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 116/735 (15%), Positives = 222/735 (30%), Gaps = 142/735 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++  +L            
Sbjct: 27  GAGSGKTRVLTHRIAYLIEERNVNPWNILAITFTNKAAGEMRERVDSLVGFGSESIWVST 86

Query: 66  FSLLSSFFL-----------------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
           F  +    L                 T         + +++   +   KE+         
Sbjct: 87  FHSMCVRILRRFIDRLGYDNRFTIYDTDDQKTLMKEVCKKVAIDTKVFKER--SLMSAIS 144

Query: 109 KIRDRFNTYKMFKSTL----ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
             ++       F+       A L +AK +   YE   K N  LDF+DL++ T  LL+ + 
Sbjct: 145 SAKNELILPDEFELNAGGDFAKLKIAK-VYREYEAQLKANNALDFDDLLVKTVQLLQTQP 203

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +   +I++DE QDT+ +Q++++R L   +          R L  VGD+ Q
Sbjct: 204 D---VLENYQERFRYIMVDEYQDTNTVQFQLVRLLAGKY----------RNLCVVGDDDQ 250

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY F GA  + +L  +               +I+L  ++RST +IL   ++V +  +  
Sbjct: 251 SIYKFRGANIRNILDFEHEF--------SDACVIKLEQNYRSTGNILNAANRVIANNKGR 302

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  +  +           G+   V L +      +                         
Sbjct: 303 KEKTLWTAN---------GEGELVHLRQFDTGYDE------------------------- 328

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A  IA  I   +                 D  VL R    + L+      +     +  
Sbjct: 329 -ADFIAEDIKKEVRAG----------ASYNDHAVLYRTNAQSRLLEEKFVAM----NVPY 373

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                        IKDL+A  + I +  DD++   ++  P        I +I     E  
Sbjct: 374 KIVGGVNFYARREIKDLLAYLKTIDNGMDDIAVRRIINVPKRGIGLTTINRIQESAAERG 433

Query: 465 TVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
             +                 +K       I     +    S  D    ++      +   
Sbjct: 434 LGFYETLMAPELIPGIGRSAAKLDSFAALIEYFKGLTGQMSITDLLREVIEKTGYMESLD 493

Query: 519 SRFGNEVI---DVLDEFLN-----FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
           S    +     + +DE +N          +++  ++L   + E+         +     +
Sbjct: 494 SEDKEDAQARKENIDELINKAAAYEEAAEDRDEPATLSAFLEEVALVADID--SLDEEQD 551

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V +MT+H+AKGLE P V+L      +F                                
Sbjct: 552 YVVLMTLHSAKGLEFPHVYLAGMEDGLFPSYMT--------------------------- 584

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                I    +   EE  RL YVG+TRA  +L +          ++        + +   
Sbjct: 585 -----ITSDDRDDLEEERRLCYVGITRAEQELTLTCARRRMVRGETQYNKISRFIKEIPA 639

Query: 691 NDERVKKIKLTNSIN 705
                   ++     
Sbjct: 640 ELLDTGSRRIEPETE 654


>gi|168491981|ref|ZP_02716124.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC0288-04]
 gi|183573779|gb|EDT94307.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC0288-04]
          Length = 763

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|300813299|ref|ZP_07093654.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512570|gb|EFK39715.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 720

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 190/551 (34%), Gaps = 120/551 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+   K+N  LDF+DL+I T +LL++      +R     +  +I +DE QDT+
Sbjct: 167 AGKIYEFYQNKLKENNALDFDDLLIKTVELLREFPD---VREFYQNKFKYIFVDEYQDTN 223

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ+++I+                  L  VGD  QSIY + GA+   +L  ++       
Sbjct: 224 SIQYKLIKLFCG----------KAPNLTVVGDNDQSIYKWRGADISNILNFQKDFP---- 269

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  II+L  ++RST +IL V + V          S                     
Sbjct: 270 ----GAKIIKLEQNYRSTQNILDVANSVIKNNPQELSKS--------------------- 304

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW         +   ++  +  +  S  +E +       +   I  +            +
Sbjct: 305 LW-------TKRQGGEKVYYKEFSVSNEEEFA-------VTNKILGL----------NYK 340

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D+ +L R    +           +   I+          D   +KD+MA  + I 
Sbjct: 341 GYSFEDMAILYRTNAQSRGFEESL----SREGINYKIVGGLRFYDRAEVKDIMAYLKVIN 396

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH----- 483
           +  D+++ + ++  P     +  I KI     +   +++E I+   N      +      
Sbjct: 397 NPLDEIALLRIINKPKRGIGDSSIEKIRDYAINNNLSMFEVIKNIENYEDLNVRAKKNIK 456

Query: 484 -VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539
                I+ LI      +  +   L++   +  +   ++   E       +DE ++  +  
Sbjct: 457 SFANLINLLIERKDSLNVGELAELVVDESQYVEDLKNQNTLEARTKISNIDELISNIMSY 516

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           ++        L   L           +++   V +MTVH AKGLE  +VFLV     +F 
Sbjct: 517 DKE-----TSLSDYLSNMSLLTDVDKTSDAKGVNLMTVHAAKGLEFKIVFLVGMEEGLFP 571

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                              +I+  +    EE  RL YV +TRA 
Sbjct: 572 -----------------------------------IIRQDEDEDIEEERRLCYVAITRAE 596

Query: 660 DQLIICKHSNT 670
           D L I      
Sbjct: 597 DLLFISSSKTR 607


>gi|301794204|emb|CBW36623.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae
           INV104]
          Length = 763

 Score =  302 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|22537300|ref|NP_688151.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R]
 gi|22534170|gb|AAN00024.1|AE014244_1 ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R]
          Length = 759

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 122/774 (15%), Positives = 243/774 (31%), Gaps = 139/774 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61
           G    ++  L ++  + +    V+  N             + ++A  L  A+Q       
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87

Query: 62  ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107
                     E  +   +  F       Q+ ++ + I + + D      +  L    +  
Sbjct: 88  HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D     K          +       Y+E  +++  +DF+DLI+ T  L  +     
Sbjct: 148 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++   +          ++ L  ++RST  IL   + V +  +N +  
Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW             +Q  +    +   +       A 
Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TI N++                KD  VL R    +  I            I     
Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     I+D++A    + +  D++SF  ++  P        + KI      ++ ++
Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQSMSL 436

Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                    +   I  L       +  +    +L      +    + 
Sbjct: 437 LDASSNVMMSPLKGKAAQAVWDLANLILTLRSNLDSLTVTEITENLLDKTGYLEALQVQN 496

Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571
             E    I+ ++EFL+ T   +          + L  L   L +          +    E
Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     VF                                 
Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA   L +   +  +   K++       + +    
Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 642

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             + + +    + +     + E  T   +   L++    ++   + ++  +L +
Sbjct: 643 LIQYQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQSQVTAQLQA 696


>gi|194397544|ref|YP_002037718.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54]
 gi|194357211|gb|ACF55659.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54]
          Length = 763

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVXKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNTQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|289423398|ref|ZP_06425202.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
           653-L]
 gi|289156156|gb|EFD04817.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
           653-L]
          Length = 786

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 128/709 (18%), Positives = 245/709 (34%), Gaps = 133/709 (18%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           LT      K +   +   +   L  ++  ++D+ +  ++    Y  + S    L     +
Sbjct: 116 LTLIKECIKALDLNDKKFEPRALIAEISSAKDKLMDPKE----YARYVSGDFWLDTVAQV 171

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y+E   +N  LDF+DLI  T +LLK  +    +         +I++DE QDTS  Q+
Sbjct: 172 FALYQERLMRNGALDFDDLIFKTVELLKSNED---VLNFYRARFRYIMVDEYQDTSKAQY 228

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+++ L              + +  VGD+ QSIY + GA+ + +L  ++   K       
Sbjct: 229 ELVKLLA----------MGHQNICVVGDDDQSIYGWRGADIRNILEFEKDYNKVF----- 273

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RST  IL   + + +     +                        LW  
Sbjct: 274 ---VVKLEQNYRSTQVILDTANHLIANNIERKKKR---------------------LW-- 307

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                  + + +        + + +       A  +   I         + N  +     
Sbjct: 308 -----SDKKDGELVKVKCLRNEVEE-------ANYVVNEI---------YENASRTNRPY 346

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            D  VL R       I        N ++I           +   IKDL+A  R I++ +D
Sbjct: 347 SDYAVLYRANAQARAIEDAL----NRFQIPYNIYGGTKFYERKEIKDLLAYIRVIVNPQD 402

Query: 434 DLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYIQKFANCGISKFQHVIK 486
           D+S   ++  P        I K+        E++Y      +     +          + 
Sbjct: 403 DISVKRIINIPRRGIGLKTIEKLEDRASMMKESLYSVLLDVDNNSDISTKAKKGINEFVD 462

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-------------SRFGNEVIDVLDEFL 533
            I     +A+  SP      IL       +               ++   + ID L EF+
Sbjct: 463 LIGIFRSLAESYSPSKMVEKILEMTGYTLELEEIVKKNEKMENGKAQEAQDRIDNLMEFI 522

Query: 534 NFTLRNEQN-----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           +  +  EQ+        +LQ  ++ +     T          +V +MT+H++KGLE PVV
Sbjct: 523 SIAIEYEQSDVFMEEAKNLQNFLANISLASDTEGEEEEFVE-KVSLMTLHSSKGLEFPVV 581

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F++    ++F                                 ++  I  +++S+ EE  
Sbjct: 582 FMIGMEEKIFP--------------------------------IARAISTMEESSIEEER 609

Query: 649 RLLYVGMTRASDQLIIC--KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           RL YVG+TRA  +L +          +   N ++ +          E        +    
Sbjct: 610 RLCYVGITRAMRELYMTQAASRTLYGKTNVNLKSRFLKELPEETVKELDPPKASPSYAGA 669

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
           D  +   ++  + +   ++R + I   +   KI + L        +EP 
Sbjct: 670 DYSLLQNYADKYKKTMNIDRAKQIGARIKSSKIQEPLDRVRDITKDEPE 718


>gi|171779530|ref|ZP_02920494.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282147|gb|EDT47578.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 783

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 99/593 (16%), Positives = 185/593 (31%), Gaps = 123/593 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+   +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 179 QIVAKCYKAYQAELRQSEAMDFDDLIMLTLRLFDQNPD---VLAYYQQRYQYIHVDEYQD 235

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 236 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 283

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   + V +   N +                      
Sbjct: 284 ------EAKVVMLEENYRSTKKILQAANAVINNNRNRRPKK------------------- 318

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI N++          
Sbjct: 319 --LW-------TQNTDGEQIVYYRARDEREE-------AVFVASTIDNIVREQGK----- 357

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 358 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 409

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 410 IANTADNISYERIVNEPKRGVGPGTLEKIRDFANLQNMSLLDASANIMLSGVKGKAAQAV 469

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   +  L       S  +    +L           +   E    I+ + EFL  T  
Sbjct: 470 WDLANLLMNLRTDLDKYSVTELVETVLDKTGYLDALRVQNTLESQARIENIKEFLTVTKN 529

Query: 539 N---------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                     +++    L   +++L     T           V +MT+H AKGLE P+VF
Sbjct: 530 FDENQDDAPEDESGIDKLSRFLNDLALIADTDDGNAETAE--VTLMTLHAAKGLEFPIVF 587

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                          +   EE  R
Sbjct: 588 LIGMEEGVFPLS----------------------------------RAAEDQDELEEERR 613

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           L YVG+TRA   L +   +  +   K++       + +      + + +    
Sbjct: 614 LAYVGITRAEQLLFVTNANTRTLFGKTSYNRPSRFIREIDDELLQYQGLARPA 666


>gi|145295025|ref|YP_001137846.1| hypothetical protein cgR_0969 [Corynebacterium glutamicum R]
 gi|140844945|dbj|BAF53944.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 763

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 115/727 (15%), Positives = 224/727 (30%), Gaps = 148/727 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + + P+       +  + S+ +           + L         ++   
Sbjct: 73  AAAEMRERVSQLVGPVAERMW--VATFHSVCVRILRQQAQ-LVEGLNTNFTIYDSDDSRR 129

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL+      +   +K    + +     +LK +L   Q+         N Y+         
Sbjct: 130 LLTMIAKDLELDIKK-FSARTLLGAISNLKNELVTPQEALADAERTHNPYE--------- 179

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           T+     + Y+   ++   +DF+DLI  T  + ++      +     +   H+LIDE QD
Sbjct: 180 TVVARAFSEYQSRLRRANAVDFDDLIGETVRIFREHP---PVAEYYRRRFRHVLIDEYQD 236

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+I +L             P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 237 TNHAQYELISTLVGKP------DQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDFSN- 289

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL+  + V S  EN +  +                   
Sbjct: 290 -------ARTILLEQNYRSTQTILSAANAVISQNENRRPKN------------------- 323

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW  +          +Q       +   +       AR IA  I N++          
Sbjct: 324 --LWTAL-------GEGEQIIGYVADNEHDE-------ARFIASEIDNLVDHG------- 360

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +   DI ++ R    +  +  +         +           +   I+D++A  R 
Sbjct: 361 ---MNYSDIAIMYRTNNSSRALEDVF----MRTGVPYKVVGGTKFYERKEIRDIIAYLRV 413

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK--------FANCGI 478
           + + +D ++   ++ +P     +     I     +   +  + +              G 
Sbjct: 414 LENPDDTVNLRRIINTPKRGIGDRAQAFIALHSENNQISFGQALLDAGLGKIDLLGARGK 473

Query: 479 SKFQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE---VID 527
           +      +    L                     + IL     + +  +    +    +D
Sbjct: 474 NAVIKFNELFDALRTELPTMVNEVTGLPDIGQVISRILDITGYKAELEASNDPQDGARLD 533

Query: 528 VLDEFLNFTLRNE--------------QNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            L+E ++                    +    SLQ  +  +       +    +++  V 
Sbjct: 534 NLNELVSVAREFSSDAANRMVNEVPEGEAQPGSLQAFLERVSLVADADQI-PDSDNGVVT 592

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE P+VFL       F H                                 
Sbjct: 593 LMTLHTAKGLEFPIVFLTGWEDGQFPH--------------------------------- 619

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            L          E  RL YVG+TRA  +L + +    S+            + +      
Sbjct: 620 -LRSLGDAKELAEERRLAYVGITRARKRLYMTRAMLRSSWGNPVTNPPSRFLQEVPAELI 678

Query: 694 RVKKIKL 700
             ++ + 
Sbjct: 679 DWRREEP 685


>gi|116627783|ref|YP_820402.1| superfamily I DNA/RNA helicase [Streptococcus thermophilus LMD-9]
 gi|116101060|gb|ABJ66206.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus LMD-9]
          Length = 770

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 113/678 (16%), Positives = 207/678 (30%), Gaps = 134/678 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  +DF+DLI+ T  L  K      +     Q   +I +DE QD
Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   + V     N +                      
Sbjct: 271 ------EAKVVLLEENYRSTKKILQAANDVIKNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +Q  +    D   +       A  +A TI N++          
Sbjct: 306 --LW-------TQNDEGEQIVYYRANDERDE-------AVFVASTIDNIVRE-------- 341

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +V   KD  VL R    +  I            I               I+D+++    
Sbjct: 342 -KVKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++SF  ++  P        + K+      +  ++ +                  
Sbjct: 397 IANTSDNISFERVVNEPKRGVGPGTLEKLRNFAYEQNMSLLDASANIMLSPIKGKAAQGV 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I  L       S  D    IL           +   E    I+ ++EF++ T  
Sbjct: 457 YDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSRIENIEEFMSVTKN 516

Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            ++ +            L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 517 FDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEAEAAE--VTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF      +                                           R
Sbjct: 575 LIGMEEGVFPLSRASEEPDELEEE----------------------------------RR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   K+        + +   +  + + +    + +    
Sbjct: 601 LAYVGITRAEEILFLTNANTRTLFGKTGYNRPSRFLREISDDLLQYQGLARPANSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
              E      +   L++    ++   + +       P          L  S     G + 
Sbjct: 661 FTKEEPIQFGQGMSLQQALQTRKANAQPQKHTGGAQPF---SKATGGLPFSKASDSGNSA 717

Query: 770 LESLLSDNQTFNRGLIIH 787
            +           G I H
Sbjct: 718 TDW--------EIGDIAH 727


>gi|182625416|ref|ZP_02953189.1| recombination helicase AddA [Clostridium perfringens D str.
           JGS1721]
 gi|177909413|gb|EDT71865.1| recombination helicase AddA [Clostridium perfringens D str.
           JGS1721]
          Length = 1271

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 125/656 (19%), Positives = 229/656 (34%), Gaps = 55/656 (8%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             F  L S         +    T+ +  +S  + E L+ +  E           KM+   
Sbjct: 279 ASFGRLKSVRKASVDDERALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178
                L    +  Y + K++  +LDF DL     ++L  +D       + +  +   +  
Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDKFE 398

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +L+DE QD++ IQ  ++  ++               +F VGD KQSIY F  A P+  L
Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296
            +    ++           I L  +FRS  +I+  V+ +F    +     L  D    + 
Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343
             +S           E +    + +     E             +     +      S  
Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSNEDELGEEEEDLDSIQ 567

Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           + AR I   I+ ++  +            GK R I+ KDI++L+R  K+           
Sbjct: 568 LEARIIGKKINELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              Y I V  +        + I+ ++AL   I +   D+  +  L+SP+F+F+ ++   +
Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684

Query: 457 CTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                +              Y +  +     K ++ + Y+++    A +    +F   + 
Sbjct: 685 RLLNKDKYFFEIIKEVVGGTYDESISKELKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562
                         G +    L        + E  S+  L   I+ +             
Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +    N N VRIM++H +KGLE PVV L  TG Q       + + +  +L          
Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
            + K        + K  +     E  R+LYV  TRA ++LII    +   +   N 
Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSCENW 920



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 57/175 (32%), Gaps = 20/175 (11%)

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
            E    +     +G I H ++Q I                    K    +E   ++    I
Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144

Query: 829  TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871
             +  ++ +    +S        Y E+    +I               ++ + + G ID  
Sbjct: 1145 QKFFKSDLGKRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
               +    + +YKT +    E E+    +  Q+++Y+  L      + +  + +Y
Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEENFINKYKIQINLYKDTLNKIL-GEEVKEVYLY 1258


>gi|319404491|emb|CBI78098.1| DNA helicase II [Bartonella rochalimae ATCC BAA-1498]
          Length = 815

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 107/550 (19%), Positives = 182/550 (33%), Gaps = 109/550 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + L  +Y++  K     DF DL++++  + +       I  +   +  +IL+DE QDT
Sbjct: 208 IGRKLYRNYQDRLKNLNACDFGDLLLHSISIFQNNPD---ILREYHNKFRYILVDEYQDT 264

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           ++ Q+  +R L +        H     L  VGD+ QSIY + GA+   +LR ++      
Sbjct: 265 NIAQYLWLRLLAQ-------HHEKQINLCCVGDDDQSIYGWRGAKVDNILRFEQDF---- 313

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   II L  ++RST+ IL     + S  +N  G +  S                 
Sbjct: 314 ----SPAKIIRLERNYRSTSHILKTASHLISHNQNRLGKTLFSDQI-------------- 355

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                         + ++    + +DS  +       AR I   I          ++   
Sbjct: 356 ------------NSDDEKVKIHAAWDSAEE-------ARAIGEEIEQAQRAGHSLNH--- 393

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  I +LVR              L     ++          + + I+D +A  R +
Sbjct: 394 -------IAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDALAYLRVV 442

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKF 481
           +   DDL+F  ++  P        +  +    R  +  ++          +      +  
Sbjct: 443 VQPADDLAFERIINIPKRGLGNATLRHLYNSARARSIPLFVAAAEIITTDELKPKIRNAL 502

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           + V++  +    + Q     +    IL        +      E    L+         EQ
Sbjct: 503 RDVVENFYRWQSMLQHTPHTELAETILDDSGYTAMWQEDRSPEAPTRLENLKEMIRSMEQ 562

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 + L S LE     +    + N N V IMT+H+AKGLE   VFL      +F H+
Sbjct: 563 -----FENLRSFLEHVSLVMDSESNENMNAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                      EE  RL YVG+TRA   
Sbjct: 618 RSLDEGGHSG--------------------------------LEEERRLAYVGITRAKKH 645

Query: 662 LIICKHSNTS 671
           L I   SN  
Sbjct: 646 LHIWCVSNRR 655


>gi|292670883|ref|ZP_06604309.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC
            43541]
 gi|292647504|gb|EFF65476.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC
            43541]
          Length = 1256

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 135/1027 (13%), Positives = 295/1027 (28%), Gaps = 157/1027 (15%)

Query: 28   VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK--NII 85
             +D+    +  +E       +  + L           + S   +F        +   NI 
Sbjct: 251  GNDLRTAAAKCLEALVHN-REIYEDLHAELNGFVNARQDSAWEAFLAQAAAAKKAKKNIP 309

Query: 86   TQEINKKSPDLKEKLKKSQD-----------EFIKIRDRFN--TYKMFKSTLASLTLAKY 132
             + +    P++  +LKK  +                             +    + L   
Sbjct: 310  RKAVEDCDPEVGAQLKKLTENIHAPWDGCIARLPATAQELYDTENAANAAIRQYVRLTIA 369

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----------VSAWIRYKIDQEINHILI 182
             +  +++ K +  +LDF DL     +LL +                I  ++    + I++
Sbjct: 370  FHNAFQQKKIERSILDFSDLEHTALELLCRDPKQLQEDPTVAAPTEIADELRAHYDAIMV 429

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT+ +Q  ++R +  +              F VGD KQSIY F  A+P        
Sbjct: 430  DEYQDTNGLQEGILRQIARE-----------NNRFIVGDVKQSIYRFRLADPSLFQHTYE 478

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              +        +  ++ +  +FRS A++L  ++++FS   + + +               
Sbjct: 479  AYRGD----SAEGELVTMSDNFRSRAEVLEPINEIFSQIMSKEAVDISYDVHAHLN---- 530

Query: 303  GQVGTVQLWEQVVSQHDS--QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
               G V       +      + N     +++  +   +  +  I A  IA  I  +    
Sbjct: 531  --PGLVFAEPTKGTSLAGPLEINLLHADYSADAEGEEERKAFEIEAHFIARRIQKLKSEG 588

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             +  NG    +Q KDI++L+R  K+   I            I    +D     +   I+ 
Sbjct: 589  YVLHNGH--AVQNKDIVILLRGAKERAGI---LLDALRKENIPAYADDTAGYFEASEIRM 643

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----ETETVYEYIQKFANC 476
            +++L   + +   D     +L SP+   + +D+  +             +       ++ 
Sbjct: 644  MLSLLAVLDNARQDTPLTAVLVSPMIGMTMEDMAALRIHTPLGGIYDILIGATGGGLSDE 703

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNF 535
              +K  + ++ I          S  +   L+               G      L   ++ 
Sbjct: 704  LTAKAANALERIRYWRRCVLVQSVPELLRLLYRETGYYDYVGGLPGGILRQANLRMLIDR 763

Query: 536  TLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                E+ +   L   +  ++         ++ R    + + VRIMT+H +KGLE P+VFL
Sbjct: 764  AADFERTNERGLFRFLRYIDALKRRSTDLSVARTLGESEDVVRIMTIHRSKGLEFPIVFL 823

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIP--IWIPQSKSRNNIVSDLIKHLKKSTQE--- 645
             +             +           +       + K        +   +++ T     
Sbjct: 824  ANIAGAFNMQDAQGDLLCHAHEGIGLRVYENSMTGRQKYDTMSRRKVKAVIQRETMAEEV 883

Query: 646  ------------------------------EYNRLLYVGMTRASDQLI------------ 663
                                          E  R   +  T   D +             
Sbjct: 884  RILYVAMTRAQEKLILTGTLNITRTGKDALEQLRETCLKYTPIQDAVFPKEAILGARSYL 943

Query: 664  --ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS---------INKDEWIAY 712
              I        +         D+V     N +    +++ +             ++ I  
Sbjct: 944  DWIALSLMRHPDGAVLFNDTDDIVCRMPSNPKAHFDVRIIDENIRASQKEAQENEDDILT 1003

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST----------I 762
                  P     + +     L     +   +    K  + E      +           +
Sbjct: 1004 AVRVDEPLPVGKDADRVAAVLGWVYDLRGTVQIHAKTSVTELKRQQEAEEKSIAPFLPAV 1063

Query: 763  DTKGKTNLESLLSD---------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKN 812
                 T LE  +                RG  +H ++Q +                    
Sbjct: 1064 GDSVDTPLEWEVPRFLRSSEREYLTPMERGTAMHTVMQQLDLSDIANIAAIEQQVNALVE 1123

Query: 813  AKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINC---------PKKD 861
              +    E   + L  I   + + +     +  + Y E+     +               
Sbjct: 1124 KGILTEAERSIINLDHIWTFVSSNLGRRMHAAKAVYRELPFGRLLPAHAYYKGATDENDQ 1183

Query: 862  IIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
            I + G ID +   +     + +YKT   +          +  Q+ +Y   ++    +K +
Sbjct: 1184 IFLQGIIDVLFEEENGNYILVDYKTDRKI--SAATARARYQFQIDLYCDAVETIL-DKPV 1240

Query: 921  VCLLIYV 927
                +++
Sbjct: 1241 KERYLFL 1247


>gi|295092248|emb|CBK78355.1| Superfamily I DNA and RNA helicases [Clostridium cf.
           saccharolyticum K10]
          Length = 830

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 113/713 (15%), Positives = 226/713 (31%), Gaps = 131/713 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   +            
Sbjct: 28  GAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAAEMRERVDQIVGFGSESIWVST 87

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF-- 120
           F       L     +     +    + + +   +K+  K+ Q +  + ++R    ++   
Sbjct: 88  FHSSCVRILRRHIDRLGYDTSFTIYDTDDQRTLMKQIFKRLQVDTKQFKERSVLGRISSL 147

Query: 121 --KSTLASLTLA-----------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +       L              L   Y++A K N  LDF+DL++ T +L    +   
Sbjct: 148 KNEMIRPDEALTNAGGDFREKKIAELYGEYQKALKNNNALDFDDLLVKTVELF---EADQ 204

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +         +I++DE QDT+++Q++++  L   +          R +  VGD+ QSIY
Sbjct: 205 EVLAYYQNRFRYIVVDEYQDTNMVQFKLVDLLAGKY----------RNICVVGDDDQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA+ + +L  ++              +I+L  ++RST +IL   ++V       +  
Sbjct: 255 KFRGADIENILSFEKAFP--------GAQVIKLEQNYRSTQNILNAANEVIRNNRGRKDK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +  +           G+   V+L +   +  +                          A 
Sbjct: 307 TLWTAN---------GEGERVRLAQFDTAYEE--------------------------AD 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            IA  I          S  + R     D  VL R    + L+          + I     
Sbjct: 332 YIACDIKA-------ESAKENRP--FSDFAVLYRTNAQSRLLEEKM----ILHSIPYRLV 378

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETV 466
                     IKD+++  + I + +DDL+   ++  P        + + I        + 
Sbjct: 379 GGVNFYQRKEIKDILSYLKTIANGQDDLAVQRIVNVPKRGIGATSMGRVIAFASAGGMSF 438

Query: 467 YEYIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           Y+ + +            K     + I +        S  +    IL     R++  +  
Sbjct: 439 YDALLRVKAVPSIGKAADKIGVFTEQIEDFKARLGELSLKELIEEILENTGYRKEIEAEG 498

Query: 522 GNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             E       ++E +N  +   +     +L   + E+             + N V +MT+
Sbjct: 499 EVEAETRLQNIEELINKAVAYWDNEENPTLDGFLEEVALVADVDSMD--ESENRVVLMTL 556

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P V+L      +F                                       
Sbjct: 557 HSAKGLEFPHVYLSGMEDGLFPSSMSIMSDDGD--------------------------- 589

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                  EE  RL YVG+TRA ++L +          ++        V +   
Sbjct: 590 -----AVEEERRLCYVGITRARERLTLTAARQRMTNGETRFSRLSRFVEEIPP 637


>gi|42519596|ref|NP_965526.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533]
 gi|41583885|gb|AAS09492.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533]
          Length = 748

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 123/692 (17%), Positives = 212/692 (30%), Gaps = 135/692 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAASEMKERVQKLLGPAADSVWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110
           F  L    L +            I   +  L    +  +D                    
Sbjct: 90  FHALCVRILRRDAKKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 149

Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T K F  ++      +   + + Y+   K++ ++DF+DLI+ T  L KK      
Sbjct: 150 KNDLLTPKDFKEQAASPFEKVTAQVYSEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
             +    +  +IL+DE QDT+  Q+++  +L   +          + +  VGD  QSIY 
Sbjct: 207 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   Q        + + I+L  ++RST  IL   + V       +   
Sbjct: 257 WRGANMENILNFEHDYQDD------EVTTIKLEQNYRSTGHILDAANSVIKNNLKRKPKK 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         +    + ++        +       A  
Sbjct: 311 ---------------------LW-------TDKGAGDKINYYRAQSGNDE-------ALF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   I                KD  VL R    +  +            I      
Sbjct: 336 IISKIKEEIKKHQR---------DYKDFAVLYRTNAQSRNVEEAL----VKANIPYRIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKD++A  + + +  D +SF  ++  P        + K     ++ +   E
Sbjct: 383 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 442

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              K                     + + I  ++          IL     ++   +   
Sbjct: 443 ETFKNLSLAPITGRPARTLATFGTALKDAIEYSKTHGVTGLTEKILADFGYKEALENEHT 502

Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E     + L+EFL  T R       E    ++L + ISE+               N+V 
Sbjct: 503 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFISEISLLSDQD--DLENQDNQVA 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEEGLFPLS-------------------------------- 588

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                   S  EE  RL YVG+TRA  +L I 
Sbjct: 589 --RAVEDPSELEEERRLAYVGITRAEKKLYIT 618


>gi|256852263|ref|ZP_05557649.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN]
 gi|260661705|ref|ZP_05862616.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN]
 gi|282934843|ref|ZP_06340076.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
 gi|297205570|ref|ZP_06922966.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16]
 gi|256615309|gb|EEU20500.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN]
 gi|260547452|gb|EEX23431.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN]
 gi|281301074|gb|EFA93385.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1]
 gi|297150148|gb|EFH30445.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16]
          Length = 754

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 121/724 (16%), Positives = 223/724 (30%), Gaps = 134/724 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEMKERVQKLLGPAGQDVWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKK------SPDLKEKL---------KKSQDEFIKI 110
           F  L    L +            I            +++ L         +         
Sbjct: 90  FHALCVRILRRDADKIGYSRNFSIADSSEQVTLIKHIEKDLNINPKQYNPRAILSAISNA 149

Query: 111 RDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++     K F+S         +   +   Y++   ++ ++DF+DLI+ T  L +K   + 
Sbjct: 150 KNDLLNPKDFESASGNRPFDQVVSEIYKEYQKRLVQDQIMDFDDLIMQTLVLFQKDKAT- 208

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
              +    +  ++L+DE QDT+  Q+++ R L   +            +  VGD  QSIY
Sbjct: 209 --LHYYQNKFRYLLVDEYQDTNEAQYQLCRLLAAQYS----------NVCVVGDGDQSIY 256

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA  + +L  ++  +++          ++L  ++RST  IL+  + V    +N +  
Sbjct: 257 GWRGANMENILNFEKDYKEK------GVHTVKLEQNYRSTGHILSAANAVIKNNQNRKAK 310

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW       D     +   + +  D           A 
Sbjct: 311 K---------------------LW------TDQGAGEKITYYRAQSD--------VDEAI 335

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I+  +                KD  +L R    +               I     
Sbjct: 336 FVISKITEAVKAGKR---------DYKDFAILYRTNAQSRGFEESL----VKSNIPYQIV 382

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETV 466
                 D   IKD++A  + + +  D +SF  ++  P        + K +         V
Sbjct: 383 GGHKFYDRKEIKDILAYLKLVANTSDSMSFNRIVNMPKRGIGAATVEKLLTFANERRIGV 442

Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFIS 519
            + +              K       + + +  AQ    +       IL      +    
Sbjct: 443 GDALSNLELVPVSAAASKKLADFNAKLVDCVSYAQDASHTVTGLTEKILEDFGYTEALKK 502

Query: 520 RFGNE---VIDVLDEFLNFTLR----NEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
               E    ++ LDEFL  T R     E     SL       E    + +     + N+V
Sbjct: 503 EKTLESASRLENLDEFLTVTKRFDDNFEAEDDESLPINDFLSEVTLLSDQDDIEDDGNQV 562

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFLV     +F                                  
Sbjct: 563 TLMTLHAAKGLEFPVVFLVGMEDGIFPLS------------------------------- 591

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                 L++   EE  RL YVG+TRA ++L +    + +   K+        V +    D
Sbjct: 592 ---RAMLEEDQLEEERRLAYVGITRAREKLYLTNAFSRTMYGKTTSNPASRFVQEIKPED 648

Query: 693 ERVK 696
              +
Sbjct: 649 LETE 652


>gi|306831468|ref|ZP_07464626.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426253|gb|EFM29367.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 771

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 104/658 (15%), Positives = 206/658 (31%), Gaps = 125/658 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNPD---VLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPE- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 272 -------AKVVLLEENYRSTKKILQAANAVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  IA TI N++  +       
Sbjct: 306 --LW-------TQNADGEQIVYYRARDEREE-------AVFIASTIDNIVREEGK----- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 345 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANTADNISYERIVNEPKRGVGPGTLEKIRDFANMQNMSLLDASANIMLSGVKGKAAQAV 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   + +L       +  +    +L           +   E    I+ ++EFL  T  
Sbjct: 457 WDLANLLMKLRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQARIENIEEFLTVTKN 516

Query: 539 NE---------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +         ++    L   +++L     T           V +MT+H AKGLE P+VF
Sbjct: 517 FDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAE--VTLMTLHAAKGLEFPIVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                          +   EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RAAEDQDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA   L +   +  +   K++       + +      + + +    + +    
Sbjct: 601 LAYVGITRAEQLLFVTNANTRTLFGKTSYNRPSRFIREIDDELLQYQGLARPANSSFGVR 660

Query: 710 --IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
              + +      +   L++    ++   +    +      K+    P   + S     
Sbjct: 661 YSNSSDEQLTFGQGMSLQQALQARKAKVQPTSSRGAQPFSKSGKAVPVGQSASASKEA 718


>gi|291532505|emb|CBL05618.1| recombination helicase AddA, Firmicutes type [Megamonas hypermegale
           ART12/1]
          Length = 1001

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 132/709 (18%), Positives = 258/709 (36%), Gaps = 57/709 (8%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            +  ++  + ++LK+            +  +++K   +   +    +  + +AK +  ++
Sbjct: 294 ALRDETKKIIKQLKEHYFTQTIEDTLSDMPQLYKQANSLCNITIEFSQAFSKAKNERSLV 353

Query: 148 DFEDLIINTNDLLKKRD------VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           DF DL   T  LL + +      + + I   + ++   I++DE QDT+ +Q  +++ +  
Sbjct: 354 DFSDLEHFTLKLLAEENSTAEKLIPSPIAQTLQEKYVEIMVDEYQDTNGVQEAILKLIAS 413

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     +   LF VGD KQSIY F  AEP+  L +            +    I+L 
Sbjct: 414 R---------TKPNLFFVGDVKQSIYKFRLAEPELFLAKYHQYP-----HEEDCLRIDLA 459

Query: 262 LSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            +FRS  +IL  V+ +FS      A  LS      +            + L   +     
Sbjct: 460 QNFRSRKEILDGVNFIFSQIMTTKAGELSYGKDEALYCGFDYPESE-FLTLKSPIELTLL 518

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDI 376
            +      +     D+          A+ IA  I  ++    +  +      R I+ KDI
Sbjct: 519 DKQQKLTLTENDDIDNEDTVQGFQAEAKYIAVRIKELMNKQPLVFDKHTKTYRPIKWKDI 578

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
           ++L+R  +D   I      +  +  I V             ++ +++L + I + + D+ 
Sbjct: 579 VILLRSVQDKAKI---LADVLREDNIPVYATIETGYFQETEVRIMLSLLQIIDNPQQDIP 635

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHE----------------TETVYEYIQKFANCGISK 480
              +L SP+FNF+ +D+  I     +                 E +    +K       K
Sbjct: 636 LTAILYSPIFNFTVEDLAHIRLINPQLNMYETLLFMTSINELQEQLLPVDKKVFAKLQIK 695

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539
               +  +H     A+  S  +   L+L              G+     L    +     
Sbjct: 696 VNDFLTKLHYWRDYARSHSVPELIWLLLNDTGYYDYVGGLPEGSVRQANLRALYDRAFNY 755

Query: 540 EQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
           EQ S+  L   +  + +         + R  S + + VRIM++H +KGLE PVV L D G
Sbjct: 756 EQTSFRGLFRFLRFIHKMQHMGNDLAVARNLSDSEDVVRIMSIHKSKGLEFPVVILADIG 815

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            Q       + +     L     +       + +N     +I+ + K  + E  R+LYV 
Sbjct: 816 KQFNLKDVQESVLFHKKLGLGLYVNDVKHHYRYQNLSRQAIIQQIVKEYKAEEMRILYVA 875

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA ++LI+        +                   + +    +  + +  +W+A   
Sbjct: 876 MTRAREKLILTGTVRNMEK------FAQYACSQLQTTTKTLPDYFIMQAKSYLDWLAPAI 929

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
           + HH   T  +       ++ +     ++      DI +  I++    D
Sbjct: 930 ARHHDGLTLRQSATNESAVLLDDPSQWQISLINSLDITDKTIISTVNED 978


>gi|168486496|ref|ZP_02711004.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570538|gb|EDT91066.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           CDC1087-00]
          Length = 763

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKIILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|304385834|ref|ZP_07368178.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
            acidilactici DSM 20284]
 gi|304328338|gb|EFL95560.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
            acidilactici DSM 20284]
          Length = 1238

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 125/863 (14%), Positives = 276/863 (31%), Gaps = 103/863 (11%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFSL------LSSFFLTQKFTPQKNIITQEINKK 92
            ++        +   L+            +L           L +   P+      E    
Sbjct: 246  LQKAAANFQTEVAGLKTVIDQFDQPNWDALQQAMVNFKFAQLPRGKKPEVQEFNLEAKPL 305

Query: 93   SPDLKEKLKKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
              + K +     + + K+++           +  L  + + +  +  + + K     LDF
Sbjct: 306  RNEFKAEFNGLVERYFKLKNDQLIAIFKDARELMLKLIEVQQQFSDRFLQEKLTRRSLDF 365

Query: 150  EDLIINTNDLLKK-RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
             DL      +L+   +    +R    ++ N +++DE QD + +Q  ++ ++  +      
Sbjct: 366  SDLEHFALQILQNQSEEGQAVRRNFQEKFNEVIVDEYQDINPLQETILTAVARE------ 419

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                P  +F VGD KQSIY+F  A+P   + + R  ++    +GQ    I L  +FRS  
Sbjct: 420  ---DPGNMFMVGDVKQSIYAFRMADPSLFISKSRRFKQ----SGQPDERIILAENFRSMQ 472

Query: 269  DILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            ++    + +F+   +     ++ D+   ++  +              +     ++    Q
Sbjct: 473  NVDDFTNLIFNQIMDQAVGEIAYDADAQLKFGAKYYPAEVQNDTEVLLFDDQQNENTADQ 532

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---IFSNGKKRVIQAKDILVLVRKR 383
            E      D    +       + IA  I  +    T        + R ++  DI +L    
Sbjct: 533  EPGAIITDKNDGQL------QMIAQRIKRLFADQTEVFDRDTQEMRPLKYSDIALLHSTG 586

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +   I    +     Y I +  ++         +  +MAL + I +   D+    +L+S
Sbjct: 587  NNNLNIVDTFK----KYGIPIEVSNAQDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRS 642

Query: 444  PLFNFSEDDIFKICTQRHETETVY-----------EYIQKFANCGISKFQHVIKYIHELI 492
            P+    E+++  +   +                  +Y  +F      K    +  +    
Sbjct: 643  PIVGLDENELAFLRISKKNGHYFESVLYFQNEFKIDYQNEFQANLKRKIDQFLAQLQHFR 702

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
             ++Q C+  D    I               G +  + L    +     E++S+  L + +
Sbjct: 703  KLSQQCTLVDLLWEIYQETGYLDYVGGMPDGPQRQNNLHALYDRAQSYEESSFKGLFQFV 762

Query: 552  SELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +E+     K         +   V++MT+H++KGLE P+VFL+D      +     +  
Sbjct: 763  RFVEKMREKNKDLAENPVVTDTEAVKLMTIHSSKGLEFPIVFLIDADHGFNNSDTKGRYV 822

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +         +  ++ + +      + +I   ++    E  R+LYV +TRA  +LII   
Sbjct: 823  LDRDAGMGITVKDFVHRLEVDTMQKNWIIDVRQRKMLAEELRVLYVALTRAQQKLIITGA 882

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
               +           D         ER K     + I          +  +PE +    E
Sbjct: 883  LKAATPTLEKWAQAADTGELLLPEAERGKAKNFLDWIGMAIMRVPSVTEDYPEVSSRNLE 942

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG---L 784
                  +                           +    + +L +    +    +G    
Sbjct: 943  SAAGVEVK--------------------------LKVVNRADLLAGQRSDTGIEQGPPPT 976

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL--LLSITRLLENPMMTTAMS 842
                 L+ +    +    + I +          A +      +  I R+ ++P       
Sbjct: 977  -----LEKVDVNSDINDADQIRAILNFKYHDIEATQTTAYQSVSEIKRVFDDPD------ 1025

Query: 843  CDSYSEVSVSGKINCPKKDIIIS 865
                    +    +   +D  I 
Sbjct: 1026 -------KLEMDFSAVDRDQKIR 1041



 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 43/425 (10%), Positives = 109/425 (25%), Gaps = 34/425 (8%)

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV---RIMTVHTAKGLESPVVFLVD 592
             L  +     ++++ +  LE               ++    +  ++ A       + +  
Sbjct: 822  VLDRDAGMGITVKDFVHRLEVDTMQKNWIIDVRQRKMLAEELRVLYVALTRAQQKLIITG 881

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE--YNRL 650
                                   P       ++      ++ +          E     L
Sbjct: 882  ALKAATPTLEKWAQAADTGELLLPEAERGKAKNFLDWIGMAIMRVPSVTEDYPEVSSRNL 941

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
                      +++            +        +            +    +       
Sbjct: 942  ESAAGVEVKLKVVNRADLLAGQRSDTG-------IEQGPPPTLEKVDVNSDINDADQIRA 994

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS---TIDTKGK 767
               +  H  E T     +++ ++      P KL     + ++    + P      D    
Sbjct: 995  ILNFKYHDIEATQTTAYQSVSEIKRVFDDPDKLEMDF-SAVDRDQKIRPQKRFVTDQLMT 1053

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL- 826
                S +S  +    G   H +LQ +                         +     +  
Sbjct: 1054 PRFMSEVSQPKPTEIGTATHLILQQLDLREPVTEAVIKDKIRELVMNRVLEEAVAKRIRI 1113

Query: 827  -SITRLLENPMMTTAMS--CDSYSEVSVSGKINCPK--------KDIIISGRIDQISISQ 875
             SI    E+ +    ++     + E + S  +            +D++I G ID      
Sbjct: 1114 NSILDFFESELGQLMLAHPEQVHREEAFSLLLPAKGLFPNVVGNQDVLIHGIIDAYFELD 1173

Query: 876  QNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEP 930
              + + +YKT   +P   +     +   +  Q+++Y + L +    K +    L  +S  
Sbjct: 1174 GRVILLDYKTDFVLPGSPQQGIQKVIDRYQGQVNLYAQALSNIL-GKPVNEKYLYLLSIG 1232

Query: 931  KVFII 935
            K+  I
Sbjct: 1233 KLVEI 1237


>gi|77409591|ref|ZP_00786269.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1]
 gi|77171802|gb|EAO74993.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1]
          Length = 759

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 122/774 (15%), Positives = 242/774 (31%), Gaps = 139/774 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61
           G    ++  L ++  + +    V+  N             + ++A  L  A+Q       
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87

Query: 62  ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107
                     E  +   +  F       Q+ ++ + I + + D      +  L    +  
Sbjct: 88  HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D     K          +       Y+E  +++  +DF+DLI+ T  L  +     
Sbjct: 148 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++   +          ++ L  ++RST  IL   + V +  +N +  
Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW             +Q  +    +   +       A 
Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TI N++                KD  VL R    +  I            I     
Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     I+D++A    + +  D++SF  ++  P        + KI      +  ++
Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQNMSL 436

Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                    +   I  L       +  +    +L      +    + 
Sbjct: 437 LDSSSNVMISPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 496

Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571
             E    I+ ++EFL+ T   +          + L  L   L +          +    E
Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     VF                                 
Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA   L +   +  +   K++       + +    
Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNANTRTLFGKTSYNRPTRFIREIDDE 642

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             + + +    + +     + E  T   +   L++    ++   + ++  +L +
Sbjct: 643 LIQHQGLARPVNSSFGVKYSKEQPTQFGQGMSLQQALQARKSNSQPQVTAQLQA 696


>gi|169832763|ref|YP_001694512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168995265|gb|ACA35877.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 763

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 101/592 (17%), Positives = 190/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +  TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVVRTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|19552081|ref|NP_600083.1| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389744|ref|YP_225146.1| ATP-dependent helicase PcrA [Corynebacterium glutamicum ATCC 13032]
 gi|21323620|dbj|BAB98247.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325079|emb|CAF19560.1| ATP-DEPENDENT HELICASE PCRA [Corynebacterium glutamicum ATCC 13032]
          Length = 763

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 116/727 (15%), Positives = 225/727 (30%), Gaps = 148/727 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + + P+       +  + S+ +           + L         ++   
Sbjct: 73  AAAEMRERVSQLVGPVAERMW--VATFHSVCVRILRQQAQ-LVEGLNTNFTIYDSDDSRR 129

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL+      +   +K    + +     +LK +L   Q+         N Y+         
Sbjct: 130 LLTMIAKDLELDIKK-FSARTLLGAISNLKNELVTPQEALADAERTHNPYE--------- 179

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           T+     + Y+   ++   +DF+DLI  T  + ++      +     +   H+LIDE QD
Sbjct: 180 TVVARAFSEYQSRLRRANAVDFDDLIGETVRIFREHP---PVAEYYRRRFRHVLIDEYQD 236

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+I +L             P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 237 TNHAQYELISTLVGKP------DQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDFSN- 289

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL+  + V S  EN +  +                   
Sbjct: 290 -------ARTILLEQNYRSTQTILSAANAVISQNENRRPKN------------------- 323

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW  +          +Q       +   +       AR IA  I N++          
Sbjct: 324 --LWTAL-------GEGEQIIGYVADNEHDE-------ARFIASEIDNLVDHG------- 360

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +   DI ++ R    +  +  +         +           +   I+D++A  R 
Sbjct: 361 ---MSYSDIAIMYRTNNSSRALEDVF----MRTGVPYKVVGGTKFYERKEIRDIIAYLRV 413

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA--------NCGI 478
           + + +D ++   ++ +P     +     I     +   +  + +   A          G 
Sbjct: 414 LENPDDTVNLRRIINTPKRGIGDRAQAFIALHSENNQISFGQALLDAALGKVDLLGARGK 473

Query: 479 SKFQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE---VID 527
           +      +    L                     + IL     + +  +    +    +D
Sbjct: 474 NAVIKFNELFDALRSELPTMVNEVTGLPDIGQVISRILDITGYKAELEASNDPQDGARLD 533

Query: 528 VLDEFLNFTLRNE--------------QNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            L+E ++                    +    SLQ  +  +       +    +++  V 
Sbjct: 534 NLNELVSVAREFSSDAANRMVNEVPEGEAQPGSLQAFLERVSLVADADQI-PDSDNGVVT 592

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE P+VFL       F H                                 
Sbjct: 593 LMTLHTAKGLEFPIVFLTGWEDGQFPH--------------------------------- 619

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            L          E  RL YVG+TRA  +L + +    S+            + +      
Sbjct: 620 -LRSLGDAKELAEERRLAYVGITRARKRLYMTRAMLRSSWGNPVTNPPSRFLQEVPAELI 678

Query: 694 RVKKIKL 700
             ++ + 
Sbjct: 679 DWRREEP 685


>gi|312278340|gb|ADQ62997.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus ND03]
          Length = 770

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 113/678 (16%), Positives = 207/678 (30%), Gaps = 134/678 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  +DF+DLI+ T  L  K      +     Q   +I +DE QD
Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +                      
Sbjct: 271 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +Q  +    D   +       A  +A TI N++          
Sbjct: 306 --LW-------TQNDEGEQIVYYRANDERDE-------AVFVASTIDNIVRE-------- 341

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +V   KD  VL R    +  I            I               I+D+++    
Sbjct: 342 -KVKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++SF  ++  P        + K+      +  ++                    
Sbjct: 397 IANTSDNISFERVVNEPKRGVGPGTLEKLRNFAYEQNMSLLYASANIMLSPIKGKAAQGV 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I  L       S  D    IL           +   E    I+ ++EF++ T  
Sbjct: 457 YDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSRIENIEEFMSVTKN 516

Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            ++ +            L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 517 FDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEAEAAE--VTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF      +                                           R
Sbjct: 575 LIGMEEGVFPLSRASEEPDELEEE----------------------------------RR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   K+        + +   +  + + +    + +    
Sbjct: 601 LAYVGITRAEEILFLTNANTRTLFGKTGYNRPSRFLREISDDLLQYQGLARPANSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
              E      +   L++    ++   + +       P          L  S     G + 
Sbjct: 661 FTKEEPIQFGQGMSLQQALQTRKANAQPQKHTGGAQPF---SKATGGLPFSKASDSGNSA 717

Query: 770 LESLLSDNQTFNRGLIIH 787
            +           G I H
Sbjct: 718 TDW--------EIGDIAH 727


>gi|167462209|ref|ZP_02327298.1| ATP-dependent deoxyribonuclease (subunit A) [Paenibacillus larvae
            subsp. larvae BRL-230010]
          Length = 1391

 Score =  301 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 128/830 (15%), Positives = 268/830 (32%), Gaps = 89/830 (10%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQ 54
             R G  L+   + I  D+        + + +    +   G P        + L+   TL 
Sbjct: 283  RREGPDLSLWQQSILHDVLLELKGAKNLLQQAKLWTEAPGGPLPYLATLDSDLELINTLL 342

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            +A++    E  +    +    +    + + + +E+ +     + ++K +     +     
Sbjct: 343  EAAEN-SWEAAYRAFQTAVFGKLKPCRGDDLDKELQEAVKQARNEVKDAVFRIKEEIFTR 401

Query: 115  -------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--- 164
                      +        + L       Y+++K+   ++DF DL      +L+  +   
Sbjct: 402  TQEEYKDELKRTAPVLHHLVRLVIDFAERYQQSKEDKGLVDFADLEHYCLAILRSEESTP 461

Query: 165  ---VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
               + +       ++   +L+DE QDT+ +Q  ++  ++++          P   F VGD
Sbjct: 462  ERMIPSSAALDYQEQFAEVLLDEYQDTNRVQESIVSLISKEA---------PGNRFMVGD 512

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             KQSIY F  AEP   L + +         G     ++L  +FRS   ++  V+ +F   
Sbjct: 513  VKQSIYRFRLAEPGLFLSKYKSYTTSGEGEG---KRVDLARNFRSRRQVVDAVNFLFRQI 569

Query: 282  --ENAQGLSEDSTTTIRHRSSRIGQVG--TVQLWEQVVSQHDSQCNPQQESWTSYFD--- 334
              E+   ++ D    +   ++        +V++     S  +      +       +   
Sbjct: 570  MQESVGEIAYDIRAELVTGANYPETGQDLSVEMMLVDRSAEEQDEFTAKGFGEDEAEPEM 629

Query: 335  ----------SLPQESSASILARRIAYTISNMIGTDT--------IFSNGKKRVIQAKDI 376
                         +  +A + AR IA  I  ++GT+             G+ R    +DI
Sbjct: 630  ASEPAASLEFEAAELETAQLEARAIALKIRRLLGTEEGVRPFQVFDKRTGELRPATFRDI 689

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            ++L+R  +    +            I    +          ++ +++L + I +   D+ 
Sbjct: 690  VILLRATQQWAPV---LMEELKQQGIPAYADLNTGYFSATEVEIMLSLLKTIDNPAQDIP 746

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI---------------------QKFAN 475
            F  +L+SP+   + DD+ +I                                     F  
Sbjct: 747  FAAVLRSPVVQLNADDLAQIRIAGPGLSFYDAAYLYANGQTAEGALSQAIQPAVSWSFKP 806

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLN 534
                K    +  +      A+  +  D    I               G +    L    +
Sbjct: 807  EVQQKLLLFLDRLESWRSEARQGALADLIWNIYRETGFYDYVGGMPGGLQRQANLRALYD 866

Query: 535  FTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
               + E  S   L   +  +E+           R+     + VRIM++H +KGLE PVVF
Sbjct: 867  RARQYESTSLRGLFRFLRFVERMKETGGDLGTARSLGEQEDVVRIMSIHKSKGLEFPVVF 926

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +                 I   L   P       +       +  + + +K     E  R
Sbjct: 927  VAGLAKIFNQRDTSGSFLIHKELGFGPKYLDPDLRVSYPTLPMLAIRRRMKLELLAEEMR 986

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            +LYV +TRA ++L +     ++++  S+   +  +   S  +DE  +     + I     
Sbjct: 987  VLYVALTRAREKLFLLGTVKSADKLLSSWSRYLGLGTWSLPDDEVARARSYLDWIGPSLI 1046

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
               +             + +     D       + SP     N    L  
Sbjct: 1047 RHRDAEGWRKRIGLEGAKLSPSLAGDPSVWSFTILSPSLLSQNLAEELKA 1096



 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 70/208 (33%), Gaps = 19/208 (9%)

Query: 747  IKNDINEPYILNPSTID-----TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
            ++  + +   ++P  +      +  K              RG ++H ++Q +        
Sbjct: 1183 MRPQVRKDRKMSPQAVPGTIQTSLKKRPRFMEEKKPTPAERGSVVHAVMQNMPLHETPTL 1242

Query: 802  KNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCP 858
             +   +     +   L  A+        I +  +  +    +  D    EV  S  +  P
Sbjct: 1243 SSVRQTLDKMLRLELLTTAQCETVPEEEILQFFQTSVGKRMVKADWVKREVPFSLGLPAP 1302

Query: 859  K-----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            +             ++I G ID +   ++ + + +YKT      ++E +   +  QL +Y
Sbjct: 1303 EVYPDIGYNGARDIVLIQGIIDCLFEDEEGLVMLDYKTDAVWQNDLEKLKDRYRLQLQLY 1362

Query: 908  EKILKDSYPNKSLVCLLIYVSEPKVFII 935
             + +++ +        L +     +  +
Sbjct: 1363 ARAVEEIWKRAPRQKYLYFFDGAHIVEL 1390


>gi|306820669|ref|ZP_07454297.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551279|gb|EFM39242.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 729

 Score =  301 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 102/545 (18%), Positives = 187/545 (34%), Gaps = 115/545 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + + Y++  KKN  +DF+DLI N   L K+      +  K   +  +I++DE QDT+ 
Sbjct: 173 AKVYSLYQQELKKNNAMDFDDLIYNCIRLFKEH---KDVLEKYQFKFKYIMVDEYQDTNY 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+ +I+ L+             + +  VGD+ QSIY++ GA+ + +L  ++        
Sbjct: 230 SQYLLIKMLSAM----------HKNICVVGDDDQSIYTWRGADIRNILEFEKDFDNVLQ- 278

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I+L  ++RST++I+     V       +                        +
Sbjct: 279 -------IKLEQNYRSTSNIINAAHSVIKKNNERKEKK---------------------I 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + ++    S      + +        +A  I  M+             
Sbjct: 311 W-------TDANDGEKIKLYSAASERDESN-------YVAINIKKMVDNQ---------G 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  VL R    +             Y I           D + IKD++A  R I +
Sbjct: 348 YDYKDFAVLYRANSLSRTYEEAF----MKYGIPYKIFGGLKFYDRMEIKDILAYFRIIDN 403

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN-----CGISKFQHV 484
           + DD+S   ++  P  +     I KI    +    ++ + + +  +           +  
Sbjct: 404 KFDDISLKRIINVPKRSIGTKTIEKIEAYAKENNMSILDAMDEVDDIVSTTKTRESVKKF 463

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
              I  L  +A      +    +L     ++ ++     E    ++ +DE  +     E 
Sbjct: 464 KLLISSLKTLANVLPVSELLDKVLENTNYKKLYLEENSVENQSRLENIDELKSVVKEFEL 523

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L   +        T       N N V +MT+H++KGLE   VFLV     +F  
Sbjct: 524 NSEDKTLSAFLQNASLS--TDMDEKIQNDNYVSLMTIHSSKGLEFRAVFLVALEEDIFPS 581

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                 L++S  EE  RL YV +TRA +
Sbjct: 582 S----------------------------------RSILEESKLEEERRLCYVAITRAKE 607

Query: 661 QLIIC 665
           +L + 
Sbjct: 608 KLFMT 612


>gi|282882802|ref|ZP_06291407.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B]
 gi|281297213|gb|EFA89704.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B]
          Length = 720

 Score =  301 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 190/551 (34%), Gaps = 120/551 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+   K+N  LDF+DL+I T +LL++      +R     +  +I +DE QDT+
Sbjct: 167 AGKIYEFYQNKLKENNALDFDDLLIKTVELLREFPD---VREFYQNKFKYIFVDEYQDTN 223

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ+++I+                  L  VGD  QSIY + GA+   +L  ++       
Sbjct: 224 SIQYKLIKLFCG----------KAPNLTVVGDNDQSIYKWRGADISNILNFQKDFP---- 269

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  II+L  ++RST +IL V + V          S                     
Sbjct: 270 ----GAKIIKLEQNYRSTQNILDVANSVIKNNPQELSKS--------------------- 304

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW         +   ++  +  +  S  +E +       +   I  +            +
Sbjct: 305 LW-------TKRQGGEKVYYKEFSVSNEEEFA-------VTNKILGL----------NYK 340

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D+ +L R    +           +   I+          D   +KD+MA  + I 
Sbjct: 341 GYSFEDMAILYRTNAQSRGFEESL----SREGINYKIVGGLRFYDRAEVKDIMAYLKVIN 396

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH----- 483
           +  D+++ + ++  P     +  + KI     +   +++E I+   N      +      
Sbjct: 397 NPLDEIALLRIINKPKRGIGDSSVEKIRDYAINNNLSMFEVIKNIENYEDLNVRAKKNIK 456

Query: 484 -VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539
                I+ LI      +  +   L++   +  +   ++   E       +DE ++  +  
Sbjct: 457 SFANLINLLIERKDLLNVGELAELVVDESQYVEDLKNQNTLEARTKISNIDELISNIMSY 516

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           ++        L   L           +++   V +MTVH AKGLE  +VFLV     +F 
Sbjct: 517 DKE-----TSLSDYLSNMSLLTDIDKTSDAKGVNLMTVHAAKGLEFKIVFLVGMEEGLFP 571

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                              +I+  +    EE  RL YV +TRA 
Sbjct: 572 -----------------------------------IIRQDEDEDIEEERRLCYVAITRAE 596

Query: 660 DQLIICKHSNT 670
           D L I      
Sbjct: 597 DLLFISSSKTR 607


>gi|288905388|ref|YP_003430610.1| ATP-dependent DNA helicase (DNA helicase II) [Streptococcus
           gallolyticus UCN34]
 gi|325978377|ref|YP_004288093.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732114|emb|CBI13679.1| Putative ATP-dependent DNA helicase (DNA helicase II)
           [Streptococcus gallolyticus UCN34]
 gi|325178305|emb|CBZ48349.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 771

 Score =  301 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 104/658 (15%), Positives = 206/658 (31%), Gaps = 125/658 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNPD---VLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPE- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 272 -------AKVVLLEENYRSTKKILQAANAVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  IA TI N++  +       
Sbjct: 306 --LW-------TQNADGEQIVYYRARDEREE-------AVFIASTIDNIVREEGK----- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 345 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANTADNISYERIVNEPKRGVGPGTLEKIRDFANMQNMSLLDASANIMLSGVKGKAAQAV 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   + +L       +  +    +L           +   E    I+ ++EFL  T  
Sbjct: 457 WDLANLLMKLRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQARIENIEEFLTVTKN 516

Query: 539 NE---------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +         ++    L   +++L     T           V +MT+H AKGLE P+VF
Sbjct: 517 FDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAE--VTLMTLHAAKGLEFPIVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                          +   EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RAAEDQDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA   L +   +  +   K++       + +      + + +    + +    
Sbjct: 601 LAYVGITRAEQLLFVTNANTRTLFGKTSYNRPSRFIREIDDELLQYQGLARPANSSFGVR 660

Query: 710 --IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
              + +      +   L++    ++   +    +      K+    P   + S     
Sbjct: 661 YSNSSDEQLTFGQGMSLQQALQARKAKVQPTSSRGAQPFSKSGKAVPVGQSASASKEA 718


>gi|227893040|ref|ZP_04010845.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM
           16047]
 gi|227865153|gb|EEJ72574.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM
           16047]
          Length = 748

 Score =  301 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 117/687 (17%), Positives = 221/687 (32%), Gaps = 126/687 (18%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           LT     +K++    IN K  D +  L    +    + D         ++     +   +
Sbjct: 120 LTLVKHIEKDL---NINPKMYDPRGVLAAISNGKNDLLD--PEAYTASASSPFEKMTAKI 174

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+   +++ ++DF+DLI+    L KK   +    +    +  +IL+DE QDT+  Q+
Sbjct: 175 YQEYQRRLRRDQIMDFDDLIMQALVLFKKDPET---LHYYQNKFRYILVDEYQDTNEAQY 231

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           ++  +L   +          + +  VGD  QSIY + GA  + ++  +   +K       
Sbjct: 232 QLCHALAAQY----------KNICVVGDADQSIYGWRGANMENIMNFEHDYKKD------ 275

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RST  IL+  + V    +N +  +                     LW  
Sbjct: 276 GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKSKN---------------------LW-- 312

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                      Q+ ++        +       A  I   I   +         K +    
Sbjct: 313 -----TDCGEGQKVTYYQAQSGDNE-------AHYIISKIQEEV---------KDKKRSY 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           KD  +L R    +  +            I           D   IKD+MA  + + +  D
Sbjct: 352 KDFAILYRTNAQSRTVEEAF----VKSNIPYQIVGGHKFYDRKEIKDIMAYLKLVANPAD 407

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETET------VYEYIQKFANCGISKFQHVIKY 487
            +S   ++ +P        + K+ T   E          +            K       
Sbjct: 408 TMSMNRIINTPKRGIGAATVDKLMTFADENHYNTLDAMEHVAESPINTRAAKKLSDFGAK 467

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN----- 539
           + + I  AQ          IL          +    E    ++ LDEFL+ T R      
Sbjct: 468 LRDAIVFAQNHGVTGLTEKILEDFDYTDALKAENTIESETRLENLDEFLSVTKRFDDHYE 527

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E++  + L + ++E+               N+V +MT+H AKGLE PVVFL+     +F
Sbjct: 528 PEEDDSNPLSDFLAEVSLLSDQDDLDED--DNQVALMTLHAAKGLEFPVVFLIGMEDGLF 585

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                     +  +  EE  RL YVG+TRA
Sbjct: 586 PLQ----------------------------------RSMMDDNELEEERRLAYVGITRA 611

Query: 659 SDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
             +L +    +       + +    + D +     + E  +K++ +   +  E     ++
Sbjct: 612 KQELFLTNAYSRMMYGRTQSNPPSRFLDEIDPKDLHKEENEKLQSSFIKSSFESRPAPFA 671

Query: 716 THHPENTPLEREETIKQLMDEQKIPKK 742
                                 +    
Sbjct: 672 RKEERARATVYTAKKASGAVGAEKKGW 698


>gi|299783521|gb|ADJ41519.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum CECT 5716]
          Length = 756

 Score =  301 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 119/695 (17%), Positives = 217/695 (31%), Gaps = 140/695 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   +             + ++   L   +        
Sbjct: 30  GAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNKAAREMKERVAKLLGEAGNDVWVST 89

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDE 106
           F  L                 F     + Q+ +I +      I+ K  + ++ L    + 
Sbjct: 90  FHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEEQNIDTKKFEPRQLLSAISNA 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D     K  +       +   +   Y++  ++N  LDF+DLI+ T +L KK   +
Sbjct: 150 KNAMEDPATFSKNHQR--PFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKK---A 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                    + ++I +DE QDT+  Q+E++  L E +            +  VGD  QSI
Sbjct: 205 PETLTYYQDKFHYIHVDEYQDTNDAQYELVHMLAEKYE----------NICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA    +L  +                + L  ++RST  IL   ++V +     + 
Sbjct: 255 YGWRGANMNNILNFEHDYPN--------AHSVMLEQNYRSTQTILKAANEVIANNLERKD 306

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW             ++ S+    +   +       A
Sbjct: 307 KN---------------------LW-------TENGAGEKISYYRAQNEHDE-------A 331

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + I   I              K   Q +D  +L R    + +I            +    
Sbjct: 332 QFIVKKIQE---------ERAKHNYQYQDFAILYRTNAQSRVIEETF----LKSTVPYTM 378

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  D + I+DL+A    I++  D +SF  ++ +P        + ++     E+   
Sbjct: 379 VGGHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNTPKRGIGMTSVERLREFAQESNLP 438

Query: 467 YEY-------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                         +    +K +   + I  L   A+  S  D    +L       +   
Sbjct: 439 LLAAAQNVQNANAISARTRNKIEEFGQLITALQDEAKVLSITDLTDQVLERTGYLAELQK 498

Query: 520 RF---GNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPP-TIKRAHSANHN 570
                G    + L+EF + T   ++          LQ+L   L      + +        
Sbjct: 499 DKTLQGQTRRENLEEFKSVTAEYDRQHEDDEGMDHLQKLTDFLAGLALVSDQDDVDEAEP 558

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V +MT+H AKGLE PV+FL+     VF                                
Sbjct: 559 AVTLMTLHAAKGLEFPVIFLIGMEEGVFPLS----------------------------- 589

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                         EE  RL YVG+TRA  +L I 
Sbjct: 590 -----RAMTDNKELEEERRLAYVGITRAKKKLYIT 619


>gi|227537987|ref|ZP_03968036.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242063|gb|EEI92078.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 758

 Score =  301 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/635 (15%), Positives = 201/635 (31%), Gaps = 118/635 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +   +   +DF+DL+  TN LL K      + +K   +  ++++DE QDT+  
Sbjct: 175 QIYMTYAQRCYRAGAMDFDDLLFKTNVLLNKHPD---VLHKYQHQFKYLMVDEYQDTNFS 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ +++ L                +  VGD+ QSIY+F GA  + +L  ++         
Sbjct: 232 QYLIVKRLAA----------VNENICVVGDDAQSIYAFRGANIQNILNFQKDYP------ 275

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                + +L  ++RST  I+   + + +  +N    +  S                    
Sbjct: 276 --DVKVFKLEQNYRSTKMIVNAANSIIANNKNQLEKNVFS-------------------- 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  D++   + +   ++ D+   +  A I+A+                     + +
Sbjct: 314 -------DNEDGEKIKVNRAFSDNEEGKIVADIIAQ-----------------EKALKGL 349

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             KD  +L R    +  +    R       I               IKDL+A  R   + 
Sbjct: 350 NFKDFAILYRTNAQSRSMEEALR----KINIPYKIYGGTSFYQRKEIKDLIAYFRLTFNP 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE----YIQKFANCGISKFQHVIK 486
            D+ +   ++  P     +  I +I      +   +++                      
Sbjct: 406 NDEEALKRVINYPRRGIGDTTIERIMIAADQQQIRLWDVVANAQMFLDGRSAGSVSGFAT 465

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---E 540
            +     +A   S  D    I       +        E     + + E LN        E
Sbjct: 466 MVQSFQAMANNHSAFDTAMHIAQHSGVLKDLYEDKSVEGLSRYENIQELLNGIKEFSERE 525

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                 L   + ++           + N + V +MT+H++KGLE P+VF+V     +F  
Sbjct: 526 DIEDRGLDVFMQDIALLTNDD-NDKNPNADTVSLMTIHSSKGLEFPIVFIVGLEENLFPS 584

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       +S  EE  RL YV +TRA  
Sbjct: 585 QLSLNS----------------------------------RSELEEERRLFYVAVTRAEK 610

Query: 661 QLIICKHSNTSNEKKSN---QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           +L +   ++       N      + D +  +  + +   +   +++ +  +     W   
Sbjct: 611 KLHLSYATSRYRWGSLNNCEPSRFLDELNPACLDLDFKPRGMPSSAGDGFQRERMTWQQK 670

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
             +     + + +K      K          +D +
Sbjct: 671 DQDTFSKPKPKVVKTTSILPKAHTPTEGFAPSDTS 705


>gi|320546849|ref|ZP_08041154.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812]
 gi|320448513|gb|EFW89251.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812]
          Length = 770

 Score =  301 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 99/593 (16%), Positives = 186/593 (31%), Gaps = 123/593 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+   +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 QIVAKCYKAYQAELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPE- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 272 -------AKVVMLEENYRSTKKILQAANAVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI N++          
Sbjct: 306 --LW-------TQNADGEQIVYYRARDEREE-------AVFVASTIDNIVREQGK----- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 345 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANTADNISYERIVNEPKRGVGPGTLEKIRTFANQQNMSLLDASANIMLSGVKGKAAQAV 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   +  L       S  +    +L           +   E    I+ ++EFL  T  
Sbjct: 457 WELSNLLMNLRDDLDKYSVTELVEAVLDKTGYLDALRVQNTLESQARIENIEEFLTVTKN 516

Query: 539 N---------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                     +++    L   +++L     T           V +MT+H AKGLE P+VF
Sbjct: 517 FDENQDDAPEDESGIDKLSRFLNDLALIADTDDGDTETAE--VTLMTLHAAKGLEFPIVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                          +   EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RAAEDQDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           L YVG+TRA   L +   +  +   K++       + +      + + +    
Sbjct: 601 LAYVGITRAEQLLFVTNANTRTLFGKTSYNRPSRFIREIDDELLQYQGLARPA 653


>gi|167751208|ref|ZP_02423335.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702]
 gi|167655715|gb|EDR99844.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702]
          Length = 1235

 Score =  301 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 152/978 (15%), Positives = 304/978 (31%), Gaps = 180/978 (18%)

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------------YKMFKSTLASLTLAK 131
              +E   +    ++++K  ++    I +++                K   +  A   L  
Sbjct: 285  FPKERAPQDRSAEKQVKAHREAVKSIFEKYFIKTCDKITSFGSDMAKSLPAVTALKNLVL 344

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
              +  Y   K++    DF D       +L +         +   + + I++DE QD++ +
Sbjct: 345  CFDKAYSAEKQRRNCADFSDAERGVYRMLCENGEKV----RERADFSLIIVDEFQDSNKL 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+E+ + LTE+           + L+ VGD KQSIY F GA+P       +         
Sbjct: 401  QYEIFKMLTEN----------KQGLYFVGDIKQSIYGFRGAQPSVFSAICK--------- 441

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               F  + L  +FRS   ++  ++ +F      +    D     R             L 
Sbjct: 442  SDDFDKLPLNENFRSNRCVIDGINTLFDRMMTEENGGVDYAENGR-------------LI 488

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              +    DS  + + ++         ++++    A  IA  I  MI       + K R  
Sbjct: 489  CGLEKDSDSPISDEDKTEVCIVSEKDRKNAVVTEAAYIAARIKQMIAQGYKVGSDK-RPC 547

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               D  +++R  K+   I      L  +  ++V  N R +L D   I+ +++L + I   
Sbjct: 548  TEDDFAIIMRSPKN--RIADYVNVLTAN-GLNVTYNQRAVLLDRPEIRLMLSLLKVINDP 604

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKI--------------------------------CTQ 459
             +D     +L SPL+ F+ DD+ ++                                  +
Sbjct: 605  YNDTELAKVLMSPLYCFTADDMARLRTGTFGFDISKIRAECADELEKYCLGTKEIVGMKR 664

Query: 460  RHETETVYEYIQKFANCGISKFQH-------------VIKYIHELIHIAQFCSPHDFFTL 506
            +     V + ++ +      K                 +  +    + A   SP +    
Sbjct: 665  KPLYSCVMQAVRGYDTSEYEKLHELTKDIKPDAKCAVFVNDLDSFRNAATASSPQELIRN 724

Query: 507  ILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRA 564
            I       +   +          L+  +++           +L +LI  LE         
Sbjct: 725  IYDRISADELLSVGDDPATRQANLELLVSYAREYSDYKDGGTLGDLIFNLENMSSLTAAQ 784

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             +  H  V+IM+ H +KGL+ PVVF+ +  S      +   + I                
Sbjct: 785  TAGGHG-VKIMSTHMSKGLQFPVVFVANCASSFNDDDYTGDVVISEEYAVASKSVDISTM 843

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT------------SN 672
            SK ++       + +KK  + E  RLLYV  TRA ++LI   + +               
Sbjct: 844  SKIQSPAYHAAAQEVKKQLESEEMRLLYVAATRAENKLIFTANISKACDEYMSVLDVNRA 903

Query: 673  EKKSNQRTWYDMVYDSFH-----------------NDERVKKIKLTNSINKDEW------ 709
             KK  + +    +                      +   V+ I    +   DE       
Sbjct: 904  GKKVGKCSGSSYLSWLIEVLSAECDKVNDMQSGIIDYGDVRYIFYPLAYEGDEHSLTIPA 963

Query: 710  --IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
                 E +  + ++   +  +         ++ KKL +    +         +  +    
Sbjct: 964  LNTGAENADEYTDDKNNDSTDIAVDEQFRSELEKKLNAAYAYEPLTKISAKFTATELAAN 1023

Query: 768  TNLESLLS------------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
               ++                           RG   HKL++ I                
Sbjct: 1024 LREKNGEENYGLFIGKPSFLTENNTGKLSGKRRGDAYHKLMEHIPFEKILSEDEISDYIK 1083

Query: 810  TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSC----DSYSEVSVSGKIN-------- 856
               A      E  ++   +I     N +    +        Y E  +  +++        
Sbjct: 1084 NSTAGFLDKAEQNSIDAGNIAGFYGNDVAKRIVQASKNGKLYREYPIFHRLDTQCYDPAI 1143

Query: 857  --------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                        +  + G  D   I    I + +YKT      + +     +  QL IY+
Sbjct: 1144 FGADSREMLEGAEPYVQGIADMFFIEDDGIVLVDYKTDKT--DDEQKYKDDYKLQLDIYK 1201

Query: 909  KILKDSYPNKSLVCLLIY 926
            + L+  +    +  ++IY
Sbjct: 1202 EALEKEFSV-PVKQMIIY 1218


>gi|56707295|ref|YP_169191.1| DNA helicase II [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669765|ref|YP_666322.1| DNA helicase II [Francisella tularensis subsp. tularensis FSC198]
 gi|224456360|ref|ZP_03664833.1| DNA helicase II [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254369977|ref|ZP_04985985.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874133|ref|ZP_05246843.1| DNA helicase II [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603787|emb|CAG44754.1| DNA helicase II [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320098|emb|CAL08137.1| DNA helicase II [Francisella tularensis subsp. tularensis FSC198]
 gi|151568223|gb|EDN33877.1| hypothetical protein FTBG_01576 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840132|gb|EET18568.1| DNA helicase II [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158414|gb|ADA77805.1| DNA helicase II [Francisella tularensis subsp. tularensis NE061598]
          Length = 740

 Score =  301 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 127/758 (16%), Positives = 233/758 (30%), Gaps = 146/758 (19%)

Query: 5   FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43
            GL+  +    + +D                  ++   L  + G                
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89
             I ++ + +   S        F  ++   L +                  Q  ++ + I
Sbjct: 68  KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           N    D K+   K    FI  + +    +  K T        ++   YEE  + +  LDF
Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            DL+++  +L         +R     +  +ILIDE QDT+ +Q+  ++ L  D       
Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 + AVGD+ QSIY + GA    +    +  +           II+L  ++RST +
Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL V + V    +N                         +LW        +  + ++   
Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVVL 317

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               +   +       A+ I   I  +              +   DI +L R    + ++
Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                       I       F   D   IKD +A  R  ++  D+L+F  ++ +P     
Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416

Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502
              +  I    +  + + ++                S     I+ I  +       S   
Sbjct: 417 NKTLETIRNYAQINSLSYWQANLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDK 476

Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553
               ++        +         + ID L E ++     E       ++   LQ+ +S 
Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                           + V++MT+H +KGLE   VFLV     VF    I          
Sbjct: 537 AVLEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNF------- 587

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            +  +      +    E  RL YV +TRA   L I      S  
Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRSIF 632

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            +S+ +     V +         K++ T +  K +  A
Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFTAAKPKTKQKA 670


>gi|313896290|ref|ZP_07829843.1| putative ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon
            137 str. F0430]
 gi|312975089|gb|EFR40551.1| putative ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon
            137 str. F0430]
          Length = 1012

 Score =  301 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 143/1019 (14%), Positives = 300/1019 (29%), Gaps = 156/1019 (15%)

Query: 48   KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
              A  ++  +  Q        +S+   T     +  I  ++++  +P++  +  +     
Sbjct: 10   ALAGEVEVFAHAQDTAAWTHFVSAA--TAAKKARGAIPRKDLDAYAPEIAAEFNRLTRTV 67

Query: 108  IKIRDRF-------------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
                ++                 +          L    +A  +  K    +L F DL  
Sbjct: 68   FAAWEKLLKRLPKTAEDLCAAENRANADIRRFAQLTIDFHAAMQREKIARGILYFSDLEH 127

Query: 155  NTNDLLKKRDV----------SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                LL                  I  ++    + I++DE QDT+ +Q  ++R +     
Sbjct: 128  EALHLLCAHPEKLQADPTMVDPTDIAVELQGHFDAIMVDEYQDTNGLQEGILRQIA---- 183

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                        F VGD KQSIY F  A+P    +  R  +  A     + +++ +  +F
Sbjct: 184  -------RGDNRFIVGDVKQSIYRFRLADPVLFQQTYRAYRSGA----AEGTLVTMSENF 232

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR--IGQVGTVQLWEQVVSQ----H 318
            RS A++L  ++ +FS       +        R    R      G   L   +        
Sbjct: 233  RSRAEVLEPINYIFSQIMTETAVDIAYDEKARLNPGRKFDELPGGKSLAAPMEVNLLRVD 292

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDIL 377
             +    ++E      +S  +     + AR IA  I  +I    I  +G     +   DI+
Sbjct: 293  YTDRADEEEKEEGEEESGEELGKFEVEARFIARRIVELISEKYIVHDGGGGHPLTYSDIV 352

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L+R  K       +      D  I    ++     +   I+ ++AL   + +   D + 
Sbjct: 353  ILLRAAKGRA---EILIEALRDAGIPAYADEPGGYFESGEIRMMLALLAALDNARQDTAL 409

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETV----YEYIQKFANCGISKFQHVIKYIHELIH 493
              +L SP+     +++ ++               +   +     +++ +H ++ I     
Sbjct: 410  AAVLASPMIGLRMEELAELRAHTPRGSIYDMLTADGGDELPAELMTRARHALERIRAWRR 469

Query: 494  IAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
             A   S  +   ++               G      L   ++     E+ +   L   + 
Sbjct: 470  YALVHSVPELLWMLYRDTGYYDYVGTLPGGVLRQANLRMLIDRASEFERTNERGLFRFLR 529

Query: 553  ELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             ++         +  R    + N VRIMT+H +KGLE PVVFL + G           + 
Sbjct: 530  YIDALRSRSTDLSAARTLGESENVVRIMTIHKSKGLEFPVVFLSNIGGSFNEKDTGGDLL 589

Query: 608  IMPSLNDDPGIPIW--IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                      +       + +     +  +   + + T+ E  R+LYV MTRA ++LI+ 
Sbjct: 590  YHAREGIGLRLFENTEAGRQRYDTLSLRRVKDVIARETKAEEMRILYVAMTRAQEKLILT 649

Query: 666  KHSNTSNE-KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               N +   K   ++     +  +      +    +    +  +W A     H       
Sbjct: 650  GTLNVTRSGKDKLEQLREKCLTYAQETGAVLPDAAILGGKSYLDWTALALMRHPDGAPLF 709

Query: 725  EREETIKQ-----LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
            E +  I             +                  +P     +    L       + 
Sbjct: 710  EADTEITPYLPVSPAARFDVRLFDEDARAARRRAADEDDPILAAVRADDPLPEGGRAEEV 769

Query: 780  FN--------RGL-IIH----------KLLQVIFTLPE-------HKRKNFITSY----- 808
                      RG   IH          +  ++I  +P                ++     
Sbjct: 770  ARILDWHYDARGTEHIHAKTSVTELKCRRAELIEEMPPPFAPAFGDTSAEMAEAWETPRF 829

Query: 809  --------------------CTKNAKLWPAKEYKNLLLSITRLL----------ENPMMT 838
                                  +   L  A +   ++     LL          E+  + 
Sbjct: 830  LRSDARAYLTPMERGIAMHTFMQQLDLTDAADIDAIVRQANTLLEKGILTEAERESIRIE 889

Query: 839  TAM-------------SCDSYSEVSVSGKINC---------PKKDIIISGRIDQIS-ISQ 875
                            +   Y E+     +            +  I + G ID +     
Sbjct: 890  HVWKFAASRLGRRMRAAKAVYRELPFGRLLPAQKYYAEAQDAEDKIFLQGIIDVLFEEDD 949

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVF 933
                + +YKT   +          +  Q+ +Y + ++     + +    L  +   +  
Sbjct: 950  GGYVLLDYKTDRKI--SAAAARARYQFQIDLYGEAVETIL-GRPVKERWLFLLDTGQEV 1005


>gi|55821019|ref|YP_139461.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
 gi|55737004|gb|AAV60646.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311]
          Length = 775

 Score =  301 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 111/678 (16%), Positives = 210/678 (30%), Gaps = 135/678 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  +DF+DLI+ T  L  K      +     Q   +I +DE QD
Sbjct: 172 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +                      
Sbjct: 277 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 311

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +Q  +    D   +       A  +A TI N++          
Sbjct: 312 --LW-------TQNDEGEQIVYYRANDERDE-------AVFVASTIDNIVRE-------- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +V   KD  +L R    +  I            I               I+D+++    
Sbjct: 348 -KVKNFKDFAILYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++SF  ++  P        + K+      +  ++ +                  
Sbjct: 403 IANTSDNISFERVVNEPKRGVGPGTLEKLRNFAYEQNMSLLDASANIMLSPIKGKAAQGV 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I  L       S  D    IL           +   E    I+ ++EF++ T  
Sbjct: 463 YDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSRIENIEEFMSVTKN 522

Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            ++ +            L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 523 FDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEVEAAE--VTLMTLHAAKGLEFPVVF 580

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF      +                                           R
Sbjct: 581 LIGMEEGVFPLSRASEEPDELEEE----------------------------------RR 606

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   K++       + +   +  + + +    + +    
Sbjct: 607 LAYVGITRAEEILFLTNANTRTLFGKTSYNRPSRFLREISDDLLQYQGLARPANSSFGVR 666

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
              E      +   L++    ++   +     +  +  +        L  S     G + 
Sbjct: 667 FTKEEPIQFGQGMSLQQALQTRKANAQP----QKHTGAQPFSKATGGLPFSKASDSGNSA 722

Query: 770 LESLLSDNQTFNRGLIIH 787
            +           G I H
Sbjct: 723 TDW--------KIGDIAH 732


>gi|16330097|ref|NP_440825.1| DNA helicase II [Synechocystis sp. PCC 6803]
 gi|1652584|dbj|BAA17505.1| DNA helicase II [Synechocystis sp. PCC 6803]
          Length = 793

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 120/682 (17%), Positives = 219/682 (32%), Gaps = 117/682 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEE 139
           K I+T++++          K  + +    ++   + + +     S    +   +   Y+ 
Sbjct: 162 KTIVTKDMDLDEKQFNP--KSIRYQVSNAKNLGQSPETYLRENPSYKGRVIAEVYQAYQN 219

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
               N  LDF+DLI+    L ++ +    +     ++ NHIL+DE QDT+ IQ+++IR L
Sbjct: 220 QLAANNALDFDDLILIPTRLFQQNES---VLGYWHRKFNHILVDEYQDTNRIQYDLIRLL 276

Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           + +    ++      R+ F VGD  QSIYSF  A+   +L  +     R  + G+  +++
Sbjct: 277 STNGEERQSEWDWRGRSTFVVGDADQSIYSFRMADFTILLNFQEDFGDRLLD-GETTTMV 335

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RS  +IL   + +             +T                          
Sbjct: 336 KLEENYRSRENILQAANHLIEHNSQRIDKILKATR------------------------- 370

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                          D   +        R +   I ++              +   D  +
Sbjct: 371 ---SGGDDIILYQADDERDES-------RFVINKILSLR--------KNNPELNFGDFAI 412

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +            +  I       F   D   IKD +A  R +++  D +S +
Sbjct: 413 LYRTNAQSRAFEEQL----LNNNIRYNIVGGFRFYDRQEIKDAIAYLRVLVNPADTVSLL 468

Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGISKFQHVIKYIHEL 491
            ++ +P     +  I        E    ++E I         A     K     + + E+
Sbjct: 469 RIINTPRRGIGKSTIEGFVNASKELDIPLWEIITDETSVNTLAGRSGKKTLQFARMLQEI 528

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-QNSYSSL 547
                  S  +  +L+L           +   E       L E  N   + E ++   SL
Sbjct: 529 QSQIGELSASEALSLVLEKSNYVDDLKQKGTEEADNRLANLGELDNAVRQFEAESEDPSL 588

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            + ++               + +EV +MT+H+AKGLE PVVFLV        H       
Sbjct: 589 VDFLASASLTSDLD--DLEESGDEVSLMTLHSAKGLEFPVVFLVGLEQGTCPHARSLNDP 646

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           +                                    EE  RL YVG+TRA + L +   
Sbjct: 647 L----------------------------------DLEEERRLCYVGITRAQENLFLTHA 672

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                           +              +L   +  D         + P   P  + 
Sbjct: 673 R------------MRYIWGSLETKIPSQFLQELPPDLLADGSTGRRTGRNAPAADP--KG 718

Query: 728 ETIKQLMDEQKIPKKLFSPIKN 749
            +I Q    +K   +   P K+
Sbjct: 719 PSIAQKQARKKTGSQSTQPAKD 740


>gi|300772620|ref|ZP_07082490.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760923|gb|EFK57749.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 758

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 98/635 (15%), Positives = 201/635 (31%), Gaps = 118/635 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +   +   +DF+DL+  TN LL K      + +K   +  ++++DE QDT+  
Sbjct: 175 QIYMTYAQRCYRAGAMDFDDLLFKTNVLLNKHPD---VLHKYQHQFKYLMVDEYQDTNFS 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ +++ L                +  VGD+ QSIY+F GA  + +L  ++         
Sbjct: 232 QYLIVKRLAA----------VNENICVVGDDAQSIYAFRGANIQNILNFQKDYP------ 275

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                + +L  ++RST  I+   + + +  +N    +  S                    
Sbjct: 276 --DVKVFKLEQNYRSTKMIVNAANSIIANNKNQLEKNVFS-------------------- 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  D++   + +   ++ D+   +  A I+A+                     + +
Sbjct: 314 -------DNEDGEKIKVNRAFSDNEEGKIVADIIAQ-----------------EKALKGL 349

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             KD  +L R    +  +    R       I               IKDL+A  R   + 
Sbjct: 350 NFKDFAILYRTNAQSRSMEEALR----KINIPYKIYGGTSFYQRKEIKDLIAYFRLTFNP 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE----YIQKFANCGISKFQHVIK 486
            D+ +   ++  P     +  I +I      +   +++                      
Sbjct: 406 NDEEALKRVINYPRRGIGDTTIERIMIAADQQQIRLWDVVANAQMFLDGRSAGSVSGFAT 465

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---E 540
            +     +A   S  D    I       +        E     + + E LN        E
Sbjct: 466 MVQSFQAMANNHSAFDTAMHIAQHSGVLKDLYEDKSVEGLSRYENIQELLNGIKEFSERE 525

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                 L   + ++           + N + V +MT+H++KGLE P+VF+V     +F  
Sbjct: 526 DIEDRGLDVFMQDIALLTNDD-NDKNPNADTVSLMTIHSSKGLEFPIVFIVGLEENLFPS 584

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       +S  EE  RL YV +TRA  
Sbjct: 585 QLSLNS----------------------------------RSELEEERRLFYVAVTRAEK 610

Query: 661 QLIICKHSNTSNEKKSN---QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           +L +   ++       N      + D +  +  + +   +   +++ +  +     W   
Sbjct: 611 KLHLSYATSRYRWGSLNNCEPSRFLDELNPACLDLDFKPRGMPSSAGDGFQRERMTWQQK 670

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
             +     + + +K      K          +D +
Sbjct: 671 DQDAFSKPKPKVVKTTSILPKAHTPTEGFAPSDTS 705


>gi|225027982|ref|ZP_03717174.1| hypothetical protein EUBHAL_02242 [Eubacterium hallii DSM 3353]
 gi|224954696|gb|EEG35905.1| hypothetical protein EUBHAL_02242 [Eubacterium hallii DSM 3353]
          Length = 738

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 123/747 (16%), Positives = 241/747 (32%), Gaps = 131/747 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L            
Sbjct: 27  GAGSGKTRSLTHRIAYLIEEKGVAPWNILAITFTNKAAQEMRERVDALVGYGSEDIWIST 86

Query: 66  FSL--------------LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKI 110
           F                    F     + QK+++ + + +   D K+ L++    E    
Sbjct: 87  FHATCSRILRRHIDLLGYDRNFTIYDASDQKSLMKEVLKEMKIDTKQFLERSVMSEISSA 146

Query: 111 RDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++ + +   +++   S         +  HY++  K+N  LDF+DL++   DL +      
Sbjct: 147 KNEYKSPLDYRNEYGSNFRNQRIADIYEHYQKRLKENNALDFDDLLVKMVDLFQTNPD-- 204

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +         +I++DE QDT+ +Q+ ++  L + +          R L  VGD+ QSIY
Sbjct: 205 -VLEHYQDRFQYIMVDEYQDTNTVQFLLVSLLAKKY----------RNLCVVGDDDQSIY 253

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA    +L  +++             +I L  ++RST +IL   + V +  +  +  
Sbjct: 254 KFRGANIYNILNFEKVFP--------DAQVIRLEQNYRSTQNILNAANGVIANNKGRKEK 305

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW             +   +  Y     +       A 
Sbjct: 306 K---------------------LW-------TENQKGELVHFKQYDTEYDE-------AD 330

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I+ +            R +Q KD+ +L R    + +     +       I     
Sbjct: 331 GVVSRINFL----------AMRGVQYKDMAILYRTNAQSRIFEEKLK----QKNIPYAIV 376

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                 D   IKDLM+  + + S  DDLS   ++  P     +  I ++       +  +
Sbjct: 377 RGISFYDRKEIKDLMSYLKVVDSGMDDLSVKRIINVPKRGIGQTTINRLQEFAILNQMSF 436

Query: 468 EYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                 A+          K       I E    A      +    IL   + R +  +  
Sbjct: 437 LDAVFNADEIPEVTRALAKLHKFADMIEEFREYASEHEISELLEHILDVTQYRAELEAEG 496

Query: 522 GNE---VIDVLDEFLN-FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMT 576
            +E    ++ ++E  N      E+    +L++ ++E + Y       +  + N  V +MT
Sbjct: 497 TDESISRLEDIEELFNDIAYYEEEEENPNLRDFLAEKDMYTLNAGIDNLEDENNKVLLMT 556

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE   VFL      VF                                     +
Sbjct: 557 LHNAKGLEFNNVFLGGMEEGVFPGF--------------------------------GAM 584

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
               +S  EE  RL YVG+TRA ++L +          ++        + +        +
Sbjct: 585 MSGDESEIEEERRLCYVGITRAKERLFLSAAKRRMLRGQTQYNRRSRFIDEIPGQYLDTE 644

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTP 723
           +      + K+     ++        P
Sbjct: 645 QRVSEQRVVKNTERPAKYQYGAKAGKP 671


>gi|168206214|ref|ZP_02632219.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str.
           JGS1987]
 gi|170662326|gb|EDT15009.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str.
           JGS1987]
          Length = 1271

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 125/656 (19%), Positives = 226/656 (34%), Gaps = 55/656 (8%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             F  L S         +    T+ +  +S  + E L+ +  E           KM+   
Sbjct: 279 ASFGRLKSVRKASVDDERALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178
                L    +  Y + K++  +LDF DL     ++L  +D       + +  +      
Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDRFE 398

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +L+DE QD++ IQ  ++  ++               +F VGD KQSIY F  A P+  L
Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296
            +    ++           I L  +FRS  +I+  V+ +F    +     L  D    + 
Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343
             +S           E +    + +     E                   +      S  
Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSDDDELGEEEEDLDSIQ 567

Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           + AR I   I  ++  +            GK R I+ KDI++L+R  K+           
Sbjct: 568 LEARIIGKKIKELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              Y I V  +        + I+ ++AL   I +   D+  +  L+SP+F+F+ ++   +
Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684

Query: 457 CTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                +              Y +  +     K ++ + Y+++    A +    +F   + 
Sbjct: 685 RLLNRDKYFFEIIKEVVDGIYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562
                         G +    L        + E  S+  L   I+ +             
Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +    N N VRIM++H +KGLE PVV L  TG Q       + + +  +L          
Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
            + K        + K  +     E  R+LYV  TRA ++LII    +   +   N 
Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSCENW 920



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 19/187 (10%)

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
            E    +     +G I H ++Q I                    K    +E   ++    I
Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144

Query: 829  TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871
             +  ++ +    +S        Y E+    +I               ++ + + G ID  
Sbjct: 1145 QKFFKSELGQRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
               +    + +YKT +   +E E+    +  Q+++Y+  L      +     L      K
Sbjct: 1205 FEEEDGYVLLDYKTDYVKEREEENFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLEK 1264

Query: 932  VFIIPQN 938
               I + 
Sbjct: 1265 ELKISKE 1271


>gi|55822939|ref|YP_141380.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
 gi|55738924|gb|AAV62565.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066]
          Length = 775

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 112/678 (16%), Positives = 210/678 (30%), Gaps = 135/678 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  +DF+DLI+ T  L  K      +     Q   +I +DE QD
Sbjct: 172 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +                      
Sbjct: 277 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 311

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +Q  +    D   +       A  +A TI N++          
Sbjct: 312 --LW-------TQNDEGEQIVYYRANDERDE-------AVFVASTIDNIVRE-------- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +V   KD  VL R    +  I            I               I+D+++    
Sbjct: 348 -KVKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++SF  ++  P        + K+      +  ++ +                  
Sbjct: 403 IANTSDNISFERVVNEPKRGVGPGTLEKLRNFAYEQNMSLLDASANIMLSPIKGKAAQGV 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I  L       S  D    IL           +   E    I+ ++EF++ T  
Sbjct: 463 YDFANMILNLRDQLDGLSITDTVEAILDKSGYLDALSMQQTLESQSRIENIEEFMSVTKN 522

Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            ++ +            L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 523 FDETNTDGTEDETGIDRLGRFLNDLALIADTDDGEVEAAE--VTLMTLHAAKGLEFPVVF 580

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF      +                                           R
Sbjct: 581 LIGMEEGVFPLSRASEEPDELEEE----------------------------------RR 606

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   K++       + +   +  + + +    + +    
Sbjct: 607 LAYVGITRAEEILFLTNANTRTLFGKTSYNRPSRFLREISDDLLQYQGLARPANSSFGVR 666

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
              E      +   L++    ++   +     +  +  +        L  S     G + 
Sbjct: 667 FTKEEPIQFGQGMSLQQALQTRKANAQP----QKHTGAQPFSKATGGLPFSKASDSGNSA 722

Query: 770 LESLLSDNQTFNRGLIIH 787
            +           G I H
Sbjct: 723 TDW--------KIGDIAH 732


>gi|227515526|ref|ZP_03945575.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC
           14931]
 gi|227086139|gb|EEI21451.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC
           14931]
          Length = 760

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 119/695 (17%), Positives = 217/695 (31%), Gaps = 140/695 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   +             + ++   L   +        
Sbjct: 34  GAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNKAAREMKERVAKLLGEAGNDVWVST 93

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDE 106
           F  L                 F     + Q+ +I +      I+ K  + ++ L    + 
Sbjct: 94  FHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEEQNIDTKKFEPRQLLSAISNA 153

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D     K  +       +   +   Y++  ++N  LDF+DLI+ T +L KK   +
Sbjct: 154 KNAMEDPATFAKNHQR--PFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKK---A 208

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                    + ++I +DE QDT+  Q+E++  L E +            +  VGD  QSI
Sbjct: 209 PETLTYYQDKFHYIHVDEYQDTNDAQYELVHMLAEKYE----------NICVVGDADQSI 258

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA    +L  +                + L  ++RST  IL   ++V +     + 
Sbjct: 259 YGWRGANMNNILNFEHDYPN--------AHSVMLEQNYRSTQTILKAANEVIANNLERKD 310

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW             ++ S+    +   +       A
Sbjct: 311 KN---------------------LW-------TENGAGEKISYYRAQNEHDE-------A 335

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + I   I              K   Q +D  +L R    + +I            +    
Sbjct: 336 QFIVKKIQE---------ERAKHNYQYQDFAILYRTNAQSRVIEETF----LKSTVPYTM 382

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  D + I+DL+A    I++  D +SF  ++ +P        + ++     E+   
Sbjct: 383 VGGHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNTPKRGIGMTSVERLREFAQESNLP 442

Query: 467 YEY-------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                         +    +K +   + I  L   A+  S  D    +L       +   
Sbjct: 443 LLAAAQNVQNANAISARTRNKIEEFGQLIAALQDEAKVLSITDLTDQVLERTGYLAELQK 502

Query: 520 RF---GNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPP-TIKRAHSANHN 570
                G    + L+EF + T   ++          LQ+L   L      + +        
Sbjct: 503 DKTLQGQTRRENLEEFKSVTAEYDRQHEDDEGMDHLQKLTDFLAGLALVSDQDDVDEAEP 562

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V +MT+H AKGLE PV+FL+     VF                                
Sbjct: 563 AVTLMTLHAAKGLEFPVIFLIGMEEGVFPLS----------------------------- 593

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                         EE  RL YVG+TRA  +L I 
Sbjct: 594 -----RAMTDNKELEEERRLAYVGITRAKKKLYIT 623


>gi|268319977|ref|YP_003293633.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785]
 gi|262398352|emb|CAX67366.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785]
          Length = 748

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 122/692 (17%), Positives = 212/692 (30%), Gaps = 135/692 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110
           F  L    L +            I   +  L    +  +D                    
Sbjct: 90  FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 149

Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T K F  ++      +   + + Y+   K++ ++DF+DLI+ T  L KK      
Sbjct: 150 KNDLLTPKDFKDQAVSPFEKVTAQVYSEYQHRLKRDQIMDFDDLIMQTLVLFKKD---KE 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
             +    +  +IL+DE QDT+  Q+++  +L   +          + +  VGD  QSIY 
Sbjct: 207 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   Q        + + I+L  ++RST  IL   + V       +   
Sbjct: 257 WRGANMENILNFEHDYQDD------EVTTIKLEQNYRSTGHILDAANSVIKNNLKRKPKK 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         +    + ++        +       A  
Sbjct: 311 ---------------------LW-------TDKGAGDKINYYRAQSGNDE-------ALF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   I                KD  VL R    +  +            I      
Sbjct: 336 IISKIKEEIKEHQR---------DYKDFAVLYRTNAQSRNVEEAL----VKANIPYRIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKD++A  + + +  D +SF  ++  P        + K     ++ +   E
Sbjct: 383 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 442

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              K                     + + I  ++          IL     ++   +   
Sbjct: 443 ETFKNLSLAPITGRPARTLATFGTALKDAIEYSKTHGVTGLTEKILADFGYKEALENEHT 502

Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E     + L+EFL  T R       E    ++L + +SE+               N+V 
Sbjct: 503 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEEGLFPLS-------------------------------- 588

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                   S  EE  RL YVG+TRA  +L I 
Sbjct: 589 --RAAEDPSELEEERRLAYVGITRAEKKLYIT 618


>gi|18309003|ref|NP_560937.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens
           str. 13]
 gi|81768348|sp|Q8XPE2|ADDA_CLOPE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|18143678|dbj|BAB79727.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens
           str. 13]
          Length = 1268

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 124/652 (19%), Positives = 226/652 (34%), Gaps = 55/652 (8%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             F  L S         +    T+ +  +S  + E L+ +  E           KM+   
Sbjct: 279 ASFGRLKSVRKASVDDERALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178
                L    +  Y + K++  +LDF DL     ++L  +D       + +  +      
Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDRFE 398

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +L+DE QD++ IQ  ++  ++               +F VGD KQSIY F  A P+  L
Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDIENPNVFMVGDVKQSIYKFRQANPELFL 451

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296
            +    ++           I L  +FRS  +I+  V+ +F    +     L  D    + 
Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343
             +S           E +    + +     E                   +      S  
Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSDEDELGEEEEDLDSIQ 567

Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           + AR I   I+ ++  +            GK R I+ KDI++L+R  K+           
Sbjct: 568 LEARIIGKKINELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              Y I V  +        + I+ ++AL   I +   D+  +  L+SP+F+F+ ++   +
Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684

Query: 457 CTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                +              Y +  +     K ++ + Y+++    A +    +F   + 
Sbjct: 685 RLLNKDKYFFEIIKEVVDGIYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562
                         G +    L        + E  S+  L   I+ +             
Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +    N N VRIM++H +KGLE PVV L  TG Q       + + +  +L          
Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDIK 864

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            + K        + K  +     E  R+LYV  TRA ++LII    +   + 
Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKS 916



 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 19/174 (10%)

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
            E    +     +G I H ++Q I                    K    +E   ++    I
Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144

Query: 829  TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871
             +  ++ +    +S        Y E+    +I               ++ + + G ID  
Sbjct: 1145 QKFFKSDLGQRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
               +    + +YKT +    E E+    +  Q+++Y+  L      +     L 
Sbjct: 1205 FKEEDGYVLLDYKTDYVKEGEEENFINKYKIQINLYKDTLNKILGEEVKEAYLY 1258


>gi|332184707|gb|AEE26961.1| ATP-dependent DNA helicase UvrD/PcrA [Francisella cf. novicida
           3523]
          Length = 740

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 108/597 (18%), Positives = 198/597 (33%), Gaps = 110/597 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            ++   YEE  + +  LDF DL+++  +L     ++  +R     +  +ILIDE QDT+ 
Sbjct: 168 AHIYTAYEERLQLDNALDFADLLLHLYELFS---LNQQLREYYQNKFKYILIDEFQDTNY 224

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+  ++ L  D             + AVGD+ QSIY + GA    +    +  +     
Sbjct: 225 VQYMWLKLLVTD----------NNYMMAVGDDDQSIYGWRGAIVDNIHNYVKDLKN---- 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II+L  ++RST +IL V + V    +N                         +L
Sbjct: 271 ----VEIIKLEQNYRSTKNILKVANSVIKNNDNRMSK---------------------EL 305

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W        +  + ++       +   +       A+ I   I N+              
Sbjct: 306 W-------SAAEDGEKVELYCAVNERDE-------AKYIIDKIRNLHSDG---------- 341

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++  DI +L R    + ++            I       F   D   IKD +A  R  ++
Sbjct: 342 VKYSDIAILYRSNYLSRVLEES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVT 397

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFAN------CGISKFQH 483
             D+L+F  ++ +P        +  I         + ++                S    
Sbjct: 398 NSDNLAFERIINTPTRGIGNKTLDTIRNFSQINNVSYWQATIDIIQKEIVTKRTASLLLK 457

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE 540
            I+ I+ +       S      +++        +         + ID L E ++     E
Sbjct: 458 FIELINTISSQINDLSLDKLLEMVINESGLLGSYQEKDTEKDRQKIDNLKELISAAKDFE 517

Query: 541 ------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                  ++   LQ+ +S               N + V++MT+H +KGLE   VFLV   
Sbjct: 518 PQIELLDDNTDILQDFLSFAVLEAGE--MQADENTDSVQLMTIHASKGLEFRYVFLVAAE 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             VF    I                           +  +      +    E  RL YV 
Sbjct: 576 EGVFPPSSIVNS----------------------EEVFDNTDSKKMQDKLAEERRLFYVA 613

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA   L I      +   +S+ +     + +         K++ T +  K +  A
Sbjct: 614 VTRAMKALTISYAQVRNIFGRSSFQVKSRFIAEIDSQHLNQGKLEFTAAKPKTKQKA 670


>gi|183221021|ref|YP_001839017.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911115|ref|YP_001962670.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775791|gb|ABZ94092.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779443|gb|ABZ97741.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 727

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 119/671 (17%), Positives = 221/671 (32%), Gaps = 128/671 (19%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           L ++    K + T+E       L  +  +++D F+   +          T         +
Sbjct: 118 LIKEILKSKEMDTKEFRPS--SLANQFSQAKDSFLTAEEFAKKKADDAYTKTI----ASV 171

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K     LDF DLI+ T  L +   V   I  K  +   +I++DE QDT+ IQ+
Sbjct: 172 FLEYEKRKNLRNALDFGDLILKTVILFRDFPV---ILEKYQRLWKYIMVDEYQDTNKIQY 228

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +++SL+          S  + L  VGD+ QSIYS+ GA+   +L  K+   +       
Sbjct: 229 HLVQSLS----------SFHKNLCVVGDDDQSIYSWRGADISNILNFKKDYPEAI----- 273

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RST  I+     + S  +     +  +   +                  
Sbjct: 274 ---VVKLEENYRSTKTIIESAAVLISHNKQRTNKTLRTKNPL------------------ 312

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                       +   TSY + + +       A  I   I            G ++  + 
Sbjct: 313 ----------GDKIKLTSYQNEMEE-------AEGIVQRIQ----------VGARKGQKY 345

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +  +  R    +       R       I       F   D   +KDL+A    +++  D
Sbjct: 346 SNFAIFYRTNSQSRYFEEALR----KRAIPYKIFGGFRFFDRKEVKDLIAYLSVVVNPVD 401

Query: 434 DLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEY----IQKFANCGISKFQHVIKYI 488
             S + ++ SP     +  + + +     E  +++E     I       + K + + +  
Sbjct: 402 STSLLRIINSPPRGIGDTTVNRLLSYSVREGISLFECLGKEIPDIKKGTVQKLKSLYRMF 461

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS 545
              +      +P +    +L     R+   +    +    +  L+EF+N     E+ +  
Sbjct: 462 ESAMEDLGKKTPSEIAYDVLEHSGYREFLENEGTEDSFSRLSNLNEFVNALKEFEEANPE 521

Query: 546 SLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           S   L   L          ++ +  + V +MTVH AKGLE   VF+       F H    
Sbjct: 522 S--SLEEYLSSISLITSEENTKDLPDYVILMTVHNAKGLEFHHVFMAGMEEGTFPHFLSL 579

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL YV +TRA   L I
Sbjct: 580 DSPDG----------------------------------IEEERRLAYVAITRARKHLEI 605

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                T    + + R     +       E + K  L   + ++ +               
Sbjct: 606 SYSRFTRKFGEVDARLPSQFL-------EELPKEFLEGELTENRFGVRRPEATPRAERFQ 658

Query: 725 EREETIKQLMD 735
           + EE  + ++ 
Sbjct: 659 KSEEKFESVLA 669


>gi|184155952|ref|YP_001844292.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183227296|dbj|BAG27812.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 756

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 119/695 (17%), Positives = 217/695 (31%), Gaps = 140/695 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   +             + ++   L   +        
Sbjct: 30  GAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNKAAREMKERVAKLLGEAGNDVWVST 89

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDE 106
           F  L                 F     + Q+ +I +      I+ K  + ++ L    + 
Sbjct: 90  FHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEEQNIDTKKFEPRQLLSAISNA 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D     K  +       +   +   Y++  ++N  LDF+DLI+ T +L KK   +
Sbjct: 150 KNAMEDPATFAKNHQR--PFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKK---A 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                    + ++I +DE QDT+  Q+E++  L E +            +  VGD  QSI
Sbjct: 205 PETLTYYQNKFHYIHVDEYQDTNDAQYELVHMLAEKYE----------NICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA    +L  +                + L  ++RST  IL   ++V +     + 
Sbjct: 255 YGWRGANMNNILNFEHDYP--------SAHSVMLEQNYRSTQTILKAANEVIANNLERKD 306

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW             ++ S+    +   +       A
Sbjct: 307 KN---------------------LW-------TENGAGEKISYYRAQNEHDE-------A 331

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + I   I              K   Q +D  +L R    + +I            +    
Sbjct: 332 QFIVKKIQE---------ERAKHNYQYQDFAILYRTNAQSRVIEETF----LKSTVPYTM 378

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  D + I+DL+A    I++  D +SF  ++ +P        + ++     E+   
Sbjct: 379 VGGHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNTPKRGIGMTSVERLREFAQESNLP 438

Query: 467 YEY-------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                         +    +K +   + I  L   A+  S  D    +L       +   
Sbjct: 439 LLAAAQNVQNANAISARTRNKIEEFGQLIAALQDEAKVLSITDLTDQVLERTGYLAELQK 498

Query: 520 RF---GNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPP-TIKRAHSANHN 570
                G    + L+EF + T   ++          LQ+L   L      + +        
Sbjct: 499 DKTLQGQTRRENLEEFKSVTAEYDRQHEDDEGMDHLQKLTDFLAGLALVSDQDDVDEAEP 558

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V +MT+H AKGLE PV+FL+     VF                                
Sbjct: 559 AVTLMTLHAAKGLEFPVIFLIGMEEGVFPLS----------------------------- 589

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                         EE  RL YVG+TRA  +L I 
Sbjct: 590 -----RAMTDNKELEEERRLAYVGITRAKKKLYIT 619


>gi|254369794|ref|ZP_04985804.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC022]
 gi|157122753|gb|EDO66882.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC022]
          Length = 740

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 127/758 (16%), Positives = 233/758 (30%), Gaps = 146/758 (19%)

Query: 5   FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43
            GL+  +    + +D                  ++   L  + G                
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89
             I ++ + +   S        F  ++   L +                  Q  ++ + I
Sbjct: 68  KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           N    D K+   K    FI  + +    +  K T        ++   YEE  + +  LDF
Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            DL+++  +L         +R     +  +ILIDE QDT+ +Q+  ++ L  D       
Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 + AVGD+ QSIY + GA    +    +  +           II+L  ++RST +
Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL V + V    +N                         +LW        +  + ++   
Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVVL 317

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               +   +       A+ I   I  +              +   DI +L R    + ++
Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                       I       F   D   IKD +A  R  ++  D+L+F  ++ +P     
Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416

Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502
              +  I    +  + + ++                S     I+ I  +       S   
Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDK 476

Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553
               ++        +         + ID L E ++     E       ++   LQ+ +S 
Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                           + V++MT+H +KGLE   VFLV     VF    I          
Sbjct: 537 AILEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            +  +      +    E  RL YV +TRA   L I      S  
Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRSIF 632

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            +S+ +     V +         K++ T +  K +  A
Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFTAAKPKTKQKA 670


>gi|311740890|ref|ZP_07714717.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304410|gb|EFQ80486.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 841

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 115/770 (14%), Positives = 219/770 (28%), Gaps = 162/770 (21%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + + +  V+                + ++   L      +     
Sbjct: 65  GAGSGKTAVLTRRIAYLMRHRGVNPWEILAITFTNKAAAEMKERVGGLVGPVAERMWVST 124

Query: 66  FSLLSSFFLTQKFTPQKNIITQ----EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
           F  +    L Q       + T     + +     L    K  Q +  K   R    ++  
Sbjct: 125 FHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDMQLDLKKYTPRVLANQISN 184

Query: 122 STLASL-----------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                +                 T    + A Y+   +    +DF+DLI     +  +  
Sbjct: 185 HKNELIGPKTALEKAQQTKNPFETTVAQVYAEYQRRLRAANAVDFDDLIGEVVRIFTQH- 243

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +   H+LIDE QDT+  Q+ ++ +L     +G +       L  VGD  Q
Sbjct: 244 --QQVVEFYRRRFKHVLIDEYQDTNHAQYALVAALVGRGELGPDA----PELCVVGDSDQ 297

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY+F GA  + +   +R   +           I L  ++RST  IL   + V +  EN 
Sbjct: 298 SIYAFRGATIRNIQEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNENR 349

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  +                     LW        +    +Q       +   +      
Sbjct: 350 REKN---------------------LW-------TAHGEGEQIVGYVADNEHDE------ 375

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR IA  I ++                  DI V+ R    +  +  +         I  
Sbjct: 376 -ARFIASEIDSLADKGR----------SYSDIAVMYRTNNASRALEDIF----IRSGIPY 420

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463
                    +   I+D++A  R + + +D +S   ++  P     +     I     +  
Sbjct: 421 KVVGGTRFYERREIRDMVAYLRILDNPDDTVSLRRIINVPKRAIGDKAQGHIALHAENHG 480

Query: 464 ETVYEYIQKFANCGISKF--------QHVIKYIHELIHIAQFCS--------PHDFFTLI 507
            +  + +       +                 +  + +                +  + I
Sbjct: 481 ISFGKALADVPRGDVPGLGTRAINAVGKFNDMMEGIRNQIPSMRDEVTGQPDLGELLSAI 540

Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQE--------------- 549
           L A   + +  +    +    +D L+E ++        + + L                 
Sbjct: 541 LDATGYKAELENSNDPQDGARLDNLNELVSVAREFTSEAANQLAASGADAVDPSELVEEG 600

Query: 550 ------LISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + LE+           +     V +MT+HTAKGLE PVVFL       F H 
Sbjct: 601 EAAPGSLQAFLEKVSLVADADQIPDSETGVVTMMTLHTAKGLEFPVVFLTGWEDGQFPHM 660

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                       E  RL YVG+TRA +Q
Sbjct: 661 RSLGDP----------------------------------KELSEERRLAYVGITRAREQ 686

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           L + +    S             + +   +    ++    +S+       
Sbjct: 687 LYLTRAILRSAWGNPVTNPASRFLGEVPEDLINWRREDTDSSLTGAWGED 736


>gi|218132415|ref|ZP_03461219.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992753|gb|EEC58755.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC
           43243]
          Length = 766

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 119/726 (16%), Positives = 223/726 (30%), Gaps = 131/726 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   +            
Sbjct: 27  GAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNKAASEMRERVDKVVSMGAEHVWVST 86

Query: 66  FSLLSSFFL-----------------TQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEF 107
           F  +    L                 +           +++N  S   KE+ +  +    
Sbjct: 87  FHSMCVRILRRYIDRIGYDTNFTIYDSDDQKSIVREAIKKLNIDSKTFKERAVLSAISAA 146

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
               +     +    +  +L+    +   Y+   K N  LDF+DLI+ T +L    D   
Sbjct: 147 KDNLESPQDMREAAGSDYNLSTIARIYDEYQRVLKINNALDFDDLIVKTVELFLTDDD-- 204

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +         +I++DE QDT+  Q+ ++  L   +          + L  VGD+ QSIY
Sbjct: 205 -VLEYYQDRFRYIMVDEYQDTNTAQFRLVSILAGKY----------KNLCVVGDDDQSIY 253

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA    +L  +              ++I+L  ++RST +IL   + V +     +  
Sbjct: 254 KFRGANIHNILNFEDAFP--------GATVIKLEQNYRSTQNILNAANNVIANNIGRKQK 305

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW           + ++  +T+Y D+  +         
Sbjct: 306 T---------------------LW-------TDNGDGEKVHFTTYDDAYAESYG------ 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TIS  +                 D  +L R    +  +            I     
Sbjct: 332 -VASTISAKVTDG----------WNYNDCAILYRTNAQSRALEEKL----VQSNIPYKIY 376

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     IKD++A  + I + +D  +   ++  P        I K+         + 
Sbjct: 377 GGVNFYQRKEIKDILAYLKTIDNGKDSQAVKRIINVPKRGIGATTINKVQEYADERGISF 436

Query: 467 YEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           ++ + +           SK +  I YI  L    Q  S       +L   + R+  +   
Sbjct: 437 FDALMRADEITTLGRSASKLKPFITYICALRAKVQSLSLEQLVEDMLEEIRYREYLLDGD 496

Query: 522 GNE----VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMT 576
             E      + +DE +N  +  E+        L   LE+            N N V +MT
Sbjct: 497 TPEEVAAREENIDELINKIVTYEEECEDDKPTLSGFLEEVALVADIDNLDENSNHVMLMT 556

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VF+      +F                                     I
Sbjct: 557 IHSAKGLEFPIVFMTGMEDGLFPSYMS--------------------------------I 584

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
               +   EE  RL YVG+TRA  +L +          ++        + +       V 
Sbjct: 585 VSEDRDALEEERRLCYVGITRAKKELYLSSARIRMVRGETQYNKVSRFIKEIPDELMAVS 644

Query: 697 KIKLTN 702
                +
Sbjct: 645 GETSFD 650


>gi|325475282|gb|EGC78467.1| UvrD/Rep family ATP-dependent DNA helicase [Treponema denticola
            F0402]
          Length = 1128

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 155/945 (16%), Positives = 292/945 (30%), Gaps = 103/945 (10%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + + + S      E     +   L               N    ++KEKLK   ++ I I
Sbjct: 225  EAMSEYSTLPNFPESIKDEAFIKLLPIIDKISKTAKGRGNDAVKEIKEKLKIIYEKLICI 284

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
               +N     +   +   +   L   Y   KK+  +L F D+     D+L        +R
Sbjct: 285  ---YNFDYSREFLASFFDMLNELQKEYIYEKKQRGLLTFSDVSQLAVDVLIND---VDLR 338

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK-----NTHSSPRTLFAVGDEKQS 225
                   + I+IDE QD + +Q +++  + E F   +          P  LF VGDEKQS
Sbjct: 339  NFYKNNADIIMIDEFQDNNSLQRDLLFLIAEKFERSEKFVPSPHELCPNKLFFVGDEKQS 398

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY+F GA+     +       +     ++ +   L +++R+   ++ + + +FS     +
Sbjct: 399  IYAFRGADVSVFRKLADDISDK-----ERLAATRLLINYRTEPTLINLFNAIFS-----K 448

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ-----ESWTSYFDSLPQES 340
                +    +                E        +   +      + + +  DS    +
Sbjct: 449  VFYSEVNKPLEKNGFVPAYEAEYVPTETRAPVKGVEPKIEIMFFDKKGFNALEDSSKFLN 508

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A  +A  I  +        +GK  R     D  VL+R          + R L   
Sbjct: 509  PVETEAMFLAKRILELHNQGFKIRDGKSARACSWSDFAVLLRASTKQSTYERVFRNL--- 565

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD--IFKIC 457
              I      +  L +   I D+ A+ + I    D  ++  +L SP  N  +D   +  + 
Sbjct: 566  -GIPYRSVQQRGLFNDAPINDIYAMLKIIAYPSDKKTYAQVLHSPFVNIDDDAFAVLLLN 624

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHE-LIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +     + E + +       +   +   +++ ++ ++   S    +            
Sbjct: 625  FTKAFDIPLAEKLNEKNKDAYLRACDLFARLNKNILTMSCAESVTYLWYEEAYRYFLLSN 684

Query: 517  FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRI 574
              +    ++ D L E       N       +  L S +E       ++       + V+ 
Sbjct: 685  EENHHYMDLYDYLFELACQADINGLTFSQFVDLLSSHIEDNERLDDMELPLDDQKDSVQF 744

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP-QSKSRNNIVS 633
            +TVH +KGLE P+V + D G++    K    +     +      P       K+ N I  
Sbjct: 745  LTVHKSKGLEFPIVIVPDCGNRGIPEKKEGLVFYNEDMGPVLYSPKAPGLSVKAGNLIFE 804

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK-HSNTSNEKKSNQRTWYDMVYDSFHND 692
             L          E  RLLYV  TRA   LII   +++  NE      +    + +     
Sbjct: 805  SLRDEANAKLIAETKRLLYVAATRAESYLIISGVYNHLQNEDNDCSSSDSRSLEEIKSML 864

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +   K      +               E  P ER++    L  ++           +   
Sbjct: 865  KLSDKTISFFELLLPALPDKHEDIIFTEILPTERKKLFNNLKTQKHEKVNFEKLFASSKV 924

Query: 753  EPYILNPSTIDTKGKTNLE---------------------------SLLSDNQTFNRGLI 785
            + + L    I T      E                               +      G +
Sbjct: 925  KEFNLAEKRITTATGLAHEINKKSKEGYLYSLTSEKDKLPVLSKNKDEQKEFTAAELGTL 984

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNA---KLWPAKEYKNLLLSITRLLENPMMTTAMS 842
             H L++                   K     K     E K +         + M   A  
Sbjct: 985  THSLIE--------------ARLLNKEFIYPKGHSEVERKKIYAWADNFFNSDMYALAKE 1030

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
             +               +  I+SG+ID +      +++ +YKT           P +H+ 
Sbjct: 1031 AEKLKS---EYGFLTDYEGQIVSGQIDLLFRKSGIVYVVDYKTD------EIENPDSHLT 1081

Query: 903  QLSIYEKILKDSYP----------NKS--LVCLLIYVSEPKVFII 935
            QL IY+K   D             +K   +   + Y+       +
Sbjct: 1082 QLKIYKKAASDLAKTESENLKENTDKPIEVKTFIFYLKTGHCVEL 1126


>gi|291542836|emb|CBL15946.1| ATP-dependent DNA helicase PcrA [Ruminococcus bromii L2-63]
          Length = 749

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 110/672 (16%), Positives = 214/672 (31%), Gaps = 138/672 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVS-DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   +        +   +   +  +         +       +     ++  
Sbjct: 69  AAGELKERICAAVPEGGADIWAATFHSTCARILRRYG----DRIGYTSHFTVYGTDDQ-- 122

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLA 125
             L    L Q    +K +  + I  +    K+K L   +       D             
Sbjct: 123 KKLVKDILKQLNIAEKTLPVKSILSEISKAKDKMLTPEEMRKEAEFDSRKAQ-------- 174

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                  +   Y+   K    +DF+D++ NT  L    + +  I      +  +I++DE 
Sbjct: 175 ----IAKVYEIYQTKLKTADAMDFDDMLCNTVKLF---ETAPDILDYYRNQFKYIMVDEY 227

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q++ +  L   +            +  VGD+ QSIY F GA  + +L  +   +
Sbjct: 228 QDTNKVQYKFVSLLASKY----------GNICVVGDDDQSIYKFRGATIENILSFENTFK 277

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      +I L  ++RST +IL   ++V S     +G +                 
Sbjct: 278 N--------AKMIRLEQNYRSTQNILNAANEVISNNTMRKGKT----------------- 312

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW             ++    +  +   +       A  IA TI + +        
Sbjct: 313 ----LW-------TENGQGEKIKVHTAENERDE-------ANFIAQTILDGVADGR---- 350

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +  D  +L R    +  I        +   +           D   I+D++A  
Sbjct: 351 ------KYSDYAILYRMNAQSNAIEQAL----SRSGVPHRVIGGHRFYDREEIRDMVAYL 400

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKFANCGI-----S 479
           + I +  DD+    ++  P        +           E++Y+ I++  N        +
Sbjct: 401 QVINNPHDDVRLSRIINVPKRGIGATTVSHAADIAAGLGESIYDVIKEAENYPQLSRASA 460

Query: 480 KFQHVIKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--VIDVLDEFLNF 535
           K +  +  I  LI    +   S  + + L++      Q   +   N    I+ ++E  + 
Sbjct: 461 KLKAFVALIDGLIEAEQSGEYSLAELYNLVIEHTSYEQYLKTEKDNPEVRIENIEELSSN 520

Query: 536 TLRNEQN--SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            ++ E++    + L   + E+            A  +   +MT+H+AKGLE PVVF+   
Sbjct: 521 IVKFEEDYGDEADLSAFLEEISLQTDIDNYDADA--DTCVMMTLHSAKGLEFPVVFIAGM 578

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F                                    +   +      E  RL YV
Sbjct: 579 EEGMFPS----------------------------------VATMMNPDELNEERRLAYV 604

Query: 654 GMTRASDQLIIC 665
           G+TRA + L   
Sbjct: 605 GITRAKEILYFT 616


>gi|38233432|ref|NP_939199.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199692|emb|CAE49351.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae]
          Length = 805

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 117/749 (15%), Positives = 218/749 (29%), Gaps = 162/749 (21%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF--L 74
            + + P     ++  NK  +   E  +  +   AQ +  ++            +     L
Sbjct: 66  VRGVQPQNILAITFTNKAAAEMRERVSSLVGPVAQRMWVSTFHSTCVRILREQAQLVPGL 125

Query: 75  TQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIK---------IRDRFNTYKMFKSTL 124
              FT   +  ++ +    S D    +KK     +          + D        +ST 
Sbjct: 126 NTNFTIYDSDDSKRLLSMISKDFSLDIKKFTPRLLATGISNLKNELIDADQACADAESTK 185

Query: 125 ASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                    + A Y++  + +  +DF+DLI  T  + ++      +     +   H+LID
Sbjct: 186 NPYETTIASVFAEYQKRLRASNAVDFDDLIGETVRIFREHP---PVTEYYRRRFRHVLID 242

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q+ +I  L         +      L  VGD  QSIY+F GA  + +   +R 
Sbjct: 243 EYQDTNHAQYALIHELV-------GSGPDASELCVVGDSDQSIYAFRGATIRNIEEFERD 295

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         I L  ++RST  IL   + V +  EN +                  
Sbjct: 296 YPN--------AETILLEQNYRSTQTILNAANSVIAQNENRREKK--------------- 332

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 LW  + S                 +   +       AR IA  +  +       
Sbjct: 333 ------LWTALGS-------GDPIVGYVADNEHDE-------ARFIANEVDALADKG--- 369

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                  +   DI V+ R    +  +  +         I           +   I+D++A
Sbjct: 370 -------VAYSDIAVMYRTNNSSRAVEDVF----MRTGIPYKVVGGTRFYERKEIRDIIA 418

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---------ETVYEYIQKFA 474
             R I + +D +S   ++ +P     +  +  +                +   + +    
Sbjct: 419 YLRLIDNPDDAVSLRRIINTPRRGIGDKAVAFLSLHADNHNVGFHKALLDATEDKVSMLG 478

Query: 475 NCGISKFQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISRFGNE-- 524
             G +     +  +  +   A              D  + IL     + +       +  
Sbjct: 479 ARGRNAVTGFVDMMKGIREEAANKVNEVTGMPDIGDMVSYILDVTGYKAELEKSNDPQDG 538

Query: 525 -VIDVLDEFLNFTLRNEQN---------------------------SYSSLQELISELEQ 556
             +D L+E ++                                   +  SL   +  +  
Sbjct: 539 ARLDNLNELVSVAREFSSEAANQVAYERMGAENQAPEIPELSEGEAAPGSLMAFLERVSL 598

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                +         V +MT+HTAKGLE PVVFL       F H                
Sbjct: 599 VADADQI-PDNEQGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPH---------------- 641

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                             L    +     E  RL YVG+TRA   L + +    S+    
Sbjct: 642 ------------------LRALGEPKELAEERRLAYVGITRARRTLYLSRAMLRSSWGNP 683

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
                   + +        ++ +  +S +
Sbjct: 684 VTNPPSRFLSEIPDELMDWRREEPEHSYD 712


>gi|261367063|ref|ZP_05979946.1| ATP-dependent DNA helicase [Subdoligranulum variabile DSM 15176]
 gi|282571182|gb|EFB76717.1| ATP-dependent DNA helicase [Subdoligranulum variabile DSM 15176]
          Length = 871

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 101/628 (16%), Positives = 196/628 (31%), Gaps = 122/628 (19%)

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIR-DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            + I+ K   +K  + +      K+        +  + T A   L   +   Y    K  
Sbjct: 183 DKMIDDKFLPIKSAVSQISSYKDKLMSPEDVAAETPRDTKA--ALISKIYTTYAGRLKTA 240

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             +DF+DLI +T  LL+    +   R     +  ++++DE QDTS+ Q+ ++R L     
Sbjct: 241 GAMDFDDLIYHTVRLLQTDAEA---REYYQNKFRYVVVDEYQDTSIAQFHLVRLLAG--- 294

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +  VGD+ QSIY F GA  + +L  +++              I L  ++
Sbjct: 295 -------GTNNVCVVGDDDQSIYKFRGATIENILNFEQVF--------TGAKTIRLEQNY 339

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST++IL   + V       +G +                     LW       +     
Sbjct: 340 RSTSNILNAANSVIKNNTGRKGKT---------------------LW------TEKGDGD 372

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           +   +T+         S    A  IA  I   +                +D  VL R   
Sbjct: 373 KVHHYTAA--------SEQDEASHIADVIGEHLREG----------AHLRDHAVLYRMNA 414

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            +  I            I           D   +KD+ +    I++  DD+    ++  P
Sbjct: 415 QSNPIETYF----ARAGIPYRIVGGQRFFDRKEVKDINSYLAVIVNPRDDVRLRRIINEP 470

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFC 498
                   + K+             I                 +   +   EL  ++   
Sbjct: 471 ARKIGASTVDKVGELAARQGVPMLQIIADVRQYPELTRAAASLEKFYEMYRELCDLSVTI 530

Query: 499 SPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRN--EQNSYSSLQELISEL 554
              +F   ++          ++   G   ++ L + ++       +    ++L   + E+
Sbjct: 531 PLDEFAGEVIKKTGYEAMLKAQKEEGETRLENLGQLVSSVKTYADQNGEDATLSGFLEEV 590

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        + + V +MT+H+AKGLE P VF+V     +F     +          
Sbjct: 591 ALISDLDSYD--QDADSVTMMTIHSAKGLEFPYVFVVGMEDGIFPGDMAR---------- 638

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---S 671
                                     +   EE  RL YV +TRA  +L +    +     
Sbjct: 639 ------------------------YNEEDMEEERRLCYVAITRAKKELYLSTSRSRLIFG 674

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +++    +   +      + +  ++ 
Sbjct: 675 QTRRNLPSCFLSEIDPGLMEETQSPELA 702


>gi|319407484|emb|CBI81134.1| DNA helicase II [Bartonella sp. 1-1C]
          Length = 815

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 105/550 (19%), Positives = 182/550 (33%), Gaps = 109/550 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + L  +Y++  K     DF DL++++  + +       I  +   +  +IL+DE QDT
Sbjct: 208 IGRKLYRNYQDRLKNLNACDFGDLLLHSISIFQNNPD---ILREYHNKFRYILVDEYQDT 264

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+  +R L +        H     L  VGD+ QSIY + GA+   +LR ++      
Sbjct: 265 NTAQYLWLRLLAQ-------RHEKQINLCCVGDDDQSIYGWRGAKVDNILRFEQDF---- 313

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   II L  ++RST+ IL     + S  ++  G +  S                 
Sbjct: 314 ----SPAKIIRLERNYRSTSHILKTASHLISHNQDRLGKTLFSDQI-------------- 355

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                         + ++    + +DS+ +       AR I   I          ++   
Sbjct: 356 ------------NSDDEKVKIHAAWDSVEE-------ARAIGEEIEQAQRAGHSLNH--- 393

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  I +LVR              L     ++          + + I+D +A  R +
Sbjct: 394 -------IAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDALAYLRVV 442

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKF 481
           +   DDL+F  ++  P        +  +    R  +  ++          +      +  
Sbjct: 443 VQPADDLAFERIINIPKRGLGNATLRHLYNSARARSIPLFVAAAEIITTDELKPKIRNAL 502

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           + V++  +    + Q     +    IL        +      E    L+         EQ
Sbjct: 503 RDVVENFYRWQSMLQRTPHTELAETILDDSGYTAMWQEDRSPEAPTRLENLKEMIRSMEQ 562

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 + L + LE     +    + N N V IMT+H+AKGLE   VFL      +F H+
Sbjct: 563 -----FENLRNFLEHVSLVMDSESNENMNAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                      EE  RL YVG+TRA   
Sbjct: 618 RSLDEGGHSG--------------------------------LEEERRLAYVGITRAKKH 645

Query: 662 LIICKHSNTS 671
           L I   SN  
Sbjct: 646 LHIWCVSNRR 655


>gi|118498158|ref|YP_899208.1| DNA helicase II [Francisella tularensis subsp. novicida U112]
 gi|194324331|ref|ZP_03058104.1| DNA helicase II [Francisella tularensis subsp. novicida FTE]
 gi|118424064|gb|ABK90454.1| DNA helicase II [Francisella novicida U112]
 gi|194321396|gb|EDX18881.1| DNA helicase II [Francisella tularensis subsp. novicida FTE]
          Length = 740

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 126/758 (16%), Positives = 234/758 (30%), Gaps = 146/758 (19%)

Query: 5   FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43
            GL+  +    + +D                  ++   L  + G                
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89
             I ++ + +   S        F  ++   L +                  Q  ++ + I
Sbjct: 68  KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           N    D K+   K    FI  + +    +  K T        ++   YEE  + +  LDF
Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKHYDANYAHIYTAYEERLQLDNALDF 186

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            DL+++  +L         +R     +  +ILIDE QDT+ +Q+  ++ L  D       
Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 + AVGD+ QSIY + GA    +    +  +           II+L  ++RST +
Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL V + V    +N                         +LW        +  + ++   
Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVEL 317

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               +   +       A+ I   I  +              +   DI +L R    + ++
Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                       I       F   D   IKD +A  R  ++  D+L+F  ++ +P     
Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416

Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502
              +  I    +  + + ++                S     I+ I+ +       S   
Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELINGISAQISQHSLDK 476

Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553
               ++        +         + ID L E ++     E       ++   LQ+ +S 
Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                           + V++MT+H +KGLE   VFLV     VF    I          
Sbjct: 537 AVLEAGD--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            +  +      +    E  RL YV +TRA   L I      +  
Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRNIF 632

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            +S+ +     V +         K++ T +  K +  A
Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFTVAKPKTKQKA 670


>gi|24215017|ref|NP_712498.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|24196064|gb|AAN49516.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
          Length = 732

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 197/617 (31%), Gaps = 119/617 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   YE+ K  N   DF DLI  T  L +K   +     K   +  ++++DE QD
Sbjct: 167 KAVSAIYKEYEKRKDANYAFDFGDLIWKTVQLFQKSSDAI---SKYRHKWEYVMVDEYQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+E++  L  +           R L  VGD+ QSIYS+ GA+   +L  ++   + 
Sbjct: 224 TNKVQYELVLLLAGE----------KRNLCVVGDDDQSIYSWRGADIGNILNFEKDFPES 273

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST++I+     V S     +                      
Sbjct: 274 V--------VIKLEENYRSTSNIILAASNVISNNTQRKEKEIF----------------- 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       +           + +   +       A  +   + +     T      
Sbjct: 309 -----------TNNPEGAPVVLNEFENESEE-------AHGVITRMRSAYSGGT------ 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + K+I +  R    +       R    +  I       F   D   IKDL+A    
Sbjct: 345 ----EYKNIAIFYRTNSQSRYFEEALR----NVGIPYKIFGGFRFFDRAEIKDLIAYLNV 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-----ETVYEYIQKFANCGISKFQ 482
           + +  D +S + ++  P     +  + KI     E      E + +          SK +
Sbjct: 397 VSNPLDSVSLLRIINYPPRGIGDSGVEKIREFSLEKGISILEVLGQEDIPLKKAAKSKGK 456

Query: 483 HVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
            +     +LI  ++   SP +    +L               E    ++ L E +N    
Sbjct: 457 ELYNLFCDLIEKSEKGLSPSEIALELLNRSGLMSHLKDEGTEESVARLENLQELVNSIEE 516

Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            E+ +   SL+E ++++               + V +MTVH AKGLE  VVFL       
Sbjct: 517 YEKNSDSPSLEEYLNQISLITSEE--DSKELTDYVNLMTVHNAKGLEFEVVFLSGLEEGT 574

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H    +                                       EE  RL YV +TR
Sbjct: 575 FPHSMSLEESHFGD---------------------------------EEERRLFYVALTR 601

Query: 658 ASDQLIICKHSNTSN----EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           A ++L +     +      E +   R   ++  + F N   V + +           +  
Sbjct: 602 AREELFLSYCRTSRKFGKVEDRIPSRFLSEIPRECFGNRGYVSRERTARKPQGPPVASKI 661

Query: 714 WSTHHPENTPLEREETI 730
              ++   +        
Sbjct: 662 RQANNELESHHAPPPDP 678


>gi|58336855|ref|YP_193440.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM]
 gi|227903414|ref|ZP_04021219.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796]
 gi|58254172|gb|AAV42409.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM]
 gi|227868890|gb|EEJ76311.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796]
          Length = 746

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 125/770 (16%), Positives = 237/770 (30%), Gaps = 138/770 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEENNVAPWNILAITFTNKAASEMREREQDLLGPAAENIWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110
           F  L    L +            I   +  L       +D                    
Sbjct: 90  FHALCVRILRRDADKINYDHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGVLSAISNG 149

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++       F+++       +   +   Y+   +++ ++DF+DLI+ T  L KK   +  
Sbjct: 150 KNDLLDPDAFEASASSPFEKMTAKIYKEYQRRLRRDQIMDFDDLIMQTLVLFKKSPET-- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +IL+DE QDT+  Q+E+  SL              + +  VGD  QSIY 
Sbjct: 208 -LQYYQDKFRYILVDEYQDTNQAQYELCHSLAA----------KHKNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + ++  ++  +K           ++L  ++RST  IL+  + V    +N +  +
Sbjct: 257 WRGANMENIMNFEQDYKKD------GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKAKN 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         Q + Q+ ++        +       A  
Sbjct: 311 ---------------------LW-------TDQGDGQKITYYQAQSGDDE-------AHY 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +           +    KD  +L R    +  +            I      
Sbjct: 336 IISKIKKEVED---------KKRSYKDFAILYRTNAQSRTVEEAF----VKSNIPYQIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET----- 463
                D   IKD+MA  + + +  D +S   ++ +P        + K+ T   E      
Sbjct: 383 GHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLLTFADENNYTAL 442

Query: 464 -ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
               +      +     K       + + I  AQ          IL      +       
Sbjct: 443 DAMEHVAESTISTRAAKKLNDFGIKLRDAIAYAQIHGVTGLTEKILEDFDYTEALRRENT 502

Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E     + LDEFL  T R       E +  + L + ++E+               N+V 
Sbjct: 503 IEAETRLENLDEFLTVTKRFDDHYEPEDDDSNPLSDFLAEVSLLSDQDDIDDD--GNQVA 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFL+     +F  +                                
Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEDGLFPLQ-------------------------------- 588

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFH 690
                +  +  EE  RL YVG+TRA  +L +    +       + +    + D +     
Sbjct: 589 --RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRTQNNPASRFLDEIEPKDI 646

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
             E  +K++ +   +  +   +              ++    +  E+K  
Sbjct: 647 QKEANEKLQNSFIQSHYQTAPFANRAERARAEVYTAKKATGAVGAEKKGW 696


>gi|212716069|ref|ZP_03324197.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661436|gb|EEB22011.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM
           16992]
          Length = 907

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 115/727 (15%), Positives = 218/727 (29%), Gaps = 123/727 (16%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P   +  +S  +      +      I      L          +  
Sbjct: 90  AAAEMRERLAALVGPEAEHMWISTFHSACVRILRRDGKEI-----GLTSGFSIYDTADC- 143

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA- 125
             L            K    + +  K  D K  L   QD+   +   +   +      A 
Sbjct: 144 ERLVKLISGDLNIDTKRYTPRMLLGKISDCKNSLTSWQDQLKSVNCDYKPGQRGYQVSAG 203

Query: 126 -SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
               L   + A Y+        +DF+DLI+ T +L ++      +      +  ++ +DE
Sbjct: 204 DVDELVAVVYAEYQHRLAMANAVDFDDLIMRTVELFQR---CPQVSEYYRHKFRYVFVDE 260

Query: 185 VQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            QDT+  Q+ ++R L+        D  +       P  +  VGD  QSIY+F GA+ + +
Sbjct: 261 YQDTNHAQYVLVRELSGIDSGEQPDPQMRGAGRVGPSWITVVGDSDQSIYAFRGADIRNI 320

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              ++               I L  ++RST  IL   + V +  EN +            
Sbjct: 321 QDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIARNENRKPKK--------- 363

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                       LW  +                          +A   A  IA  I+ + 
Sbjct: 364 ------------LWTALGEGDKIVGYAA--------------DNAQQEAGWIANEIARIH 397

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
             +          I  +DI ++ R    +  +         +  +           +   
Sbjct: 398 EEE---------GIAYRDIAIMYRANAQSRSLEEAM----INANLPYQLVGGTKFYERKE 444

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           IKD +A  + I++  D+++   +L  P           I +     +T +    +     
Sbjct: 445 IKDALAYLQAIVNPADNVNVRRILNVPKRGLGVRAEGLIASYADAHDTTFFGAIEHMEQI 504

Query: 478 ISKFQHVIKYIHELIHIAQFC---------SPHDFFTLILGAKKGRQQFISRFGNE---V 525
                   K +     +              P +    +L      ++       +    
Sbjct: 505 EGMSARTTKPLGVFRDMMHGLADFAKDHDTKPSEVVAEVLSKSGILEELQRSEDPQDASR 564

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583
           +D L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKGL
Sbjct: 565 VDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHTAKGL 624

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P VFL       F H+                                        S 
Sbjct: 625 EYPYVFLTGMEQGTFPHQ----------------------------------RAMEDTSE 650

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             E  RL YVG+TRA  +L + + +  +   ++N       + +        K+ +    
Sbjct: 651 LAEERRLAYVGITRAKRRLYVTRAAVRAQWGQANDMMHSQFLDEIPDELIDWKRREAGVE 710

Query: 704 INKDEWI 710
             +  W 
Sbjct: 711 RMRASWR 717


>gi|328462071|gb|EGF34244.1| ATP-dependent helicase [Lactobacillus helveticus MTCC 5463]
          Length = 745

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 122/769 (15%), Positives = 234/769 (30%), Gaps = 138/769 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   QV+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMREREQKLLGPAAQNIWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106
           F  L    L +            I   +  L                   +  L    + 
Sbjct: 90  FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILSAISNG 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D         ++     +A  +   Y+   +++ ++DF+DLI+ T  L KK   +
Sbjct: 150 KNDLLD--PKAFAASASSPFDKMAAKIYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
               +    +  +IL+DE QDT+  Q+E+  +L   +          + +  VGD  QSI
Sbjct: 208 ---LHYYQNKFRYILVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + ++  +   +K           ++L  ++RST  IL+  + V    +N + 
Sbjct: 255 YGWRGANMENIMNFESDYKKD------GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW         Q    + ++        +       A
Sbjct: 309 KN---------------------LW-------TDQGEGAKVTYYQAQSGDDE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I   I   +           +    KD  +L R    +  +            I    
Sbjct: 334 HYIISKIKEEVEA---------KKRTYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET- 465
                  D   IKD+MA  + + +  D +S   ++  P        + K+     E    
Sbjct: 381 VGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPKRGIGAATVDKLLAFADENHYN 440

Query: 466 -----VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                 +            K       + + I  AQ          IL   +      + 
Sbjct: 441 ALDAMDHVAESPINTRTAKKLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYSSLQE---LISELEQ-YPPTIKRAHSANHNEVR 573
              E     + LDEFL+ T R + +      E   L   L +    + +     + N+V 
Sbjct: 501 NTIEAETRLENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVA 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F  +                                
Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEDGLFPLQ-------------------------------- 588

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFH 690
                +  +  EE  RL YVG+TRA  +L +    +       + +    + D +     
Sbjct: 589 --RAMMDDNELEEERRLAYVGITRAKKELYLTNAYSRMMYGRMQNNPPSRFLDEIDPKDL 646

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
             E   +++ +   +  +     ++             +     +++  
Sbjct: 647 QKEESNQLQSSFIKSNFQSQTAPFARKAERARAQVYTASGAVGAEKKGW 695


>gi|168210476|ref|ZP_02636101.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711446|gb|EDT23628.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str.
           ATCC 3626]
          Length = 1271

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 124/652 (19%), Positives = 227/652 (34%), Gaps = 55/652 (8%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             F  L S         +    T+ +  +S  + E L+ +  E           KM+   
Sbjct: 279 ASFGRLKSVRKASVDDERALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178
                L    +  Y + K++  +LDF DL     ++L  +D       + +  +   +  
Sbjct: 339 KCLSGLIIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEDGNIKPSQVALEFKDKFE 398

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +L+DE QD++ IQ  ++  ++               +F VGD KQSIY F  A P+  L
Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296
            +    ++           I L  +FRS  +I+  V+ +F    +     L  D    + 
Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343
             +S           E +    + +     E             +     +      S  
Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSNEDELGEEEEDLDSIQ 567

Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           + AR I   I  ++  +            GK R I+ KDI++L+R  K+           
Sbjct: 568 LEARIIGKKIKELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              Y I V  +        + I+ ++AL   I +   D+  +  L+SP+F+F+ ++   +
Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684

Query: 457 CTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                +              Y +  +     K ++ + Y+++    A +    +F   + 
Sbjct: 685 RLLNRDKYFFEIIKEVVDGTYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562
                         G +    L        + E  S+  L   I+ +             
Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +    N N VRIM++H +KGLE PVV L  TG Q       + + +  +L          
Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            + K        + K  +     E  R+LYV  TRA ++LII    +   + 
Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKS 916



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 19/187 (10%)

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
            E    +     +G I H ++Q I                    K    +E   ++    I
Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144

Query: 829  TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871
             +  ++ +    +S        Y E+    +I               ++ + + G ID  
Sbjct: 1145 QKFFKSELGQRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
               +    + +YKT +    E E     +  Q+++Y+  L      +     L      K
Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEEAFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLEK 1264

Query: 932  VFIIPQN 938
               I + 
Sbjct: 1265 ELKISKE 1271


>gi|323467081|gb|ADX70768.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus H10]
          Length = 753

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 120/692 (17%), Positives = 214/692 (30%), Gaps = 135/692 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   QV+  N             + ++ Q L   +        
Sbjct: 35  GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMREREQKLLGPAAQNIWMST 94

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106
           F  L    L +            I   +  L                   +  L    + 
Sbjct: 95  FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILSAISNG 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D         ++     +A  +   Y+   +++ ++DF+DLI+ T  L KK   +
Sbjct: 155 KNDLLD--PKAFAASASSPFDKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET 212

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
               +    +  +IL+DE QDT+  Q+E+  +L   +          + +  VGD  QSI
Sbjct: 213 ---FHYYQNKFRYILVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 259

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + ++  +   +K           ++L  ++RST  IL+  + V    +N + 
Sbjct: 260 YGWRGANMENIMNFESDYKKD------GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW         Q    + ++        +       A
Sbjct: 314 KN---------------------LW-------TDQGEGAKVTYYQAQSGDDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I   I   +           +    KD  +L R    +  +            I    
Sbjct: 339 HYIISKIKEEVEA---------KKRTYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  D   IKD+MA  + + +  D +S   ++  P        + K+     E    
Sbjct: 386 VGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPKRGIGATTVDKLLAFADENHYN 445

Query: 467 YEYIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                              K       + + I  AQ          IL   +      + 
Sbjct: 446 ALDAMDHVGESPINTRTAKKLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAE 505

Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYSSLQE---LISELEQ-YPPTIKRAHSANHNEVR 573
              E     + LDEFL+ T R + +      E   L   L +    + +     + N+V 
Sbjct: 506 NTIEAETRLENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVA 565

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F  +                                
Sbjct: 566 LMTLHAAKGLEFPVVFLVGMEDGLFPLQ-------------------------------- 593

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                +  +  EE  RL YVG+TRA  +L + 
Sbjct: 594 --RAMMDDNELEEERRLAYVGITRAKKELYLT 623


>gi|265764162|ref|ZP_06092730.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16]
 gi|263256770|gb|EEZ28116.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16]
          Length = 786

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 104/689 (15%), Positives = 213/689 (30%), Gaps = 129/689 (18%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             A +   + + + Y E  ++   +DF+DL++ T  L +       +  +  ++  ++L+
Sbjct: 168 LAAKMPAIRDIYSRYWERCRQAGAMDFDDLLVYTYILFRDFPD---VLARYREQFRYVLV 224

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +
Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           I             + +L  ++RST  I+   + +    E        S           
Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                           + +       + +Y D    +         +   I+ +      
Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    +  D  +L R    + +     R       +               IKD++
Sbjct: 349 ------HDYEYSDFAILYRTNAQSRVFEEALR----KRGMPYKIYGGLSFYQRKEIKDII 398

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474
           A  R +++  D+ +F  ++  P     +  + KI T       +++  + +         
Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATDNNVSLWTALCEPITYGLSIN 458

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
               +K Q     I + +      + ++  T I+       +       E     + ++E
Sbjct: 459 KGTHTKLQDFRALIEQFMADVTVKNAYEIGTEIIRQSGIINEVCQDNSPENLSRKENIEE 518

Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            +N         + E N+  SL + +SE+             +  +V +MTVH+AKGLE 
Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+V     +F                                              E
Sbjct: 578 RNVFVVGMEENLFPSGMAGDSS----------------------------------RAME 603

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YV +TRA +   +          K    +    + D      ++ +        
Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSI 663

Query: 706 KDEWIAYEWSTHHP-------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            +    +              E           +    +        P          L+
Sbjct: 664 DEGAGRFRREMEEGYSRHSSSERFSARPSADRPEREQPKAQIIAPTVPRNLKKVSGTTLS 723

Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786
           PS+    G   ++   + +++ F  G +I
Sbjct: 724 PSSASGAGVAGVQPGQTIEHERFGLGEVI 752


>gi|134301332|ref|YP_001121300.1| DNA helicase II [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049109|gb|ABO46180.1| DNA helicase II [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 740

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 198/617 (32%), Gaps = 110/617 (17%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           + +    +  K T        ++   YEE  + +  LDF DL+++  +L         +R
Sbjct: 148 KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDFADLLLHLYELFSFN---QQLR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                +  +ILIDE QDT+ +Q+  ++ L  D             + AVGD+ QSIY + 
Sbjct: 205 EYYQNKFKYILIDEFQDTNHVQYMWLKLLITD----------NNYMMAVGDDDQSIYGWR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +    +  +           II+L  ++RST +IL V + V    +N       
Sbjct: 255 GAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKNILKVANSVIKNNDNRMSK--- 303

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             +LW        +  + ++       +   +       A+ I 
Sbjct: 304 ------------------ELW-------SAAEDGEKVVLYCAVNERDE-------AKYII 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +              +   DI +L R    + ++            I       F
Sbjct: 332 DKIRQLHNDG----------VDYSDIAILYRSNYLSRVLEES----CIYASIPYRIYGGF 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              D   IKD +A  R  ++  D+L+F  ++ +P        +  I    +  + + ++ 
Sbjct: 378 RFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIGNKTLETIRNYAQINSLSYWQA 437

Query: 470 IQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---R 520
                          S     I+ I  +       S       ++        +      
Sbjct: 438 TLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDKLLESVINQSGLLASYQEKNSE 497

Query: 521 FGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
              + ID L E ++     E       ++   LQ+ +S                 + V++
Sbjct: 498 KDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSFAVLEAGE--MQADEATDSVQL 555

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H +KGLE   VFLV     VF    I                           +  +
Sbjct: 556 MTIHASKGLEFRYVFLVAAEEGVFPPSSIVNF----------------------EEVFDN 593

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                 +    E  RL YV +TRA   L I      S   +S+ +     V +       
Sbjct: 594 TSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRSIFGRSSFQVKSRFVAEIDSQHLS 653

Query: 695 VKKIKLTNSINKDEWIA 711
             K++ T +  K +  A
Sbjct: 654 QGKLEFTAAKPKTKQKA 670


>gi|260662791|ref|ZP_05863685.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN]
 gi|260552872|gb|EEX25871.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN]
          Length = 756

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 118/695 (16%), Positives = 217/695 (31%), Gaps = 140/695 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   +             + ++   L   +        
Sbjct: 30  GAGSGKTRVLTHRIAYLIEERHVLPWHILAITFTNKAAREMKERVAKLLGEAGNDVWVST 89

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDE 106
           F  +                 F     + Q+ +I +      I+ K  + ++ L    + 
Sbjct: 90  FHAMCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEEQNIDTKKFEPRQLLSAISNA 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D     K  +       +   +   Y++  ++N  LDF+DLI+ T +L KK   +
Sbjct: 150 KNAMEDPATFAKNHQR--PFDRMVARVYEAYQKELERNQTLDFDDLIMKTIELFKK---A 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                    + ++I +DE QDT+  Q+E++  L E +            +  VGD  QSI
Sbjct: 205 PETLTYYQDKFHYIHVDEYQDTNDAQYELVHMLAEKYE----------NICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA    +L  +                + L  ++RST  IL   ++V +     + 
Sbjct: 255 YGWRGANMNNILNFEHDYPN--------AHSVMLEQNYRSTQTILKAANEVIANNLERKD 306

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW             ++ S+    +   +       A
Sbjct: 307 KN---------------------LW-------TENGAGEKISYYRAQNEHDE-------A 331

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + I   I              K   Q +D  +L R    + +I            +    
Sbjct: 332 QFIVKKIQE---------ERAKHNYQYQDFAILYRTNAQSRVIEETF----LKSTVPYTM 378

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  D + I+DL+A    I++  D +SF  ++ +P        + ++     E+   
Sbjct: 379 VGGHRFYDRMEIRDLLAYLTLIVNPLDSMSFERVVNTPKRGIGMTSVERLREFAQESNLP 438

Query: 467 YEY-------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                         +    +K +   + I  L   A+  S  D    +L       +   
Sbjct: 439 LLAAAQNVQNANAISARTRNKIEEFGQLITALQDEAKVLSITDLTDQVLERTGYLAELQK 498

Query: 520 RF---GNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPP-TIKRAHSANHN 570
                G    + L+EF + T   ++          LQ+L   L      + +        
Sbjct: 499 DKTLQGQTRRENLEEFKSVTAEYDRQHEDDEGMDHLQKLTDFLAGLALVSDQDDVDEAEP 558

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V +MT+H AKGLE PV+FL+     VF                                
Sbjct: 559 AVTLMTLHAAKGLEFPVIFLIGMEEGVFPLS----------------------------- 589

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                         EE  RL YVG+TRA  +L I 
Sbjct: 590 -----RAMTDNKELEEERRLAYVGITRAKKKLYIT 619


>gi|329667843|gb|AEB93791.1| ATP-dependent DNA helicase [Lactobacillus johnsonii DPC 6026]
          Length = 748

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 130/761 (17%), Positives = 228/761 (29%), Gaps = 136/761 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110
           F  L    L +            I   +  L    +  +D                    
Sbjct: 90  FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 149

Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T K F  ++      +   + + Y+   K++ ++DF+DLI+ T  L KK      
Sbjct: 150 KNDLLTPKDFKDQAASPFEKVTAQVYSEYQHRLKRDQIMDFDDLIMQTLVLFKKD---QE 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
             +    +  +IL+DE QDT+  Q+++  +L   +          + +  VGD  QSIY 
Sbjct: 207 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   Q        + + I+L  ++RST  IL   + V       +   
Sbjct: 257 WRGANMENILNFEHDYQDD------EVTTIKLEQNYRSTGHILDAANSVIKNNLKRKPKK 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         +    +  +        +       A  
Sbjct: 311 ---------------------LW-------TDKGAGDKIDYYRAQSGNDE-------ALF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   I                KD  VL R    +  +            I      
Sbjct: 336 IISKIKEEIKEHQR---------DYKDFAVLYRTNAQSRNVEEAL----VKANIPYRIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKD++A  + + +  D +SF  ++  P        + K     ++ +   E
Sbjct: 383 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 442

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              K                     + + I  ++          IL     ++   +   
Sbjct: 443 ETFKNLSLAPITGRPARTLATFGTALKDAIEYSKTHGVTGLTEKILADFGYKEALENEHT 502

Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E     + L+EFL  T R       E    ++L + +SE+               N+V 
Sbjct: 503 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEEGLFPLS-------------------------------- 588

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   S  EE  RL YVG+TRA  +L I    S     +    +    +      + 
Sbjct: 589 --RAAEDPSELEEERRLAYVGITRAEKKLYITNAFSRMMYGRPQRNQPSRFIDEIEDKDL 646

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           E V  +   + I+    I  +         P    E  K+ 
Sbjct: 647 EFVNPMPSNSVISVPFDIRRKEQAKSHAYFPKITIEEAKKA 687


>gi|315037777|ref|YP_004031345.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112]
 gi|312275910|gb|ADQ58550.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112]
          Length = 748

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 123/773 (15%), Positives = 242/773 (31%), Gaps = 138/773 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   QV+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAATEMREREQKLLGPAAENIWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKS------PDLKEKL---------KKSQDEFIKI 110
           F  L    L +            I   +        +++ L         +         
Sbjct: 90  FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGVLAAISNG 149

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++     + F++T       +A  +   Y+   +++ ++DF+DLI+ T  L KK   +  
Sbjct: 150 KNDLLDPEAFETTASSPFEKMAAKIYKEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET-- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
             +    +  +IL+DE QDT+  Q+++  +L   +          + +  VGD  QSIY 
Sbjct: 208 -LHYYQNKFRYILVDEYQDTNEAQYQLCHALAAQY----------KNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + ++  +   QK           ++L  ++RST  IL+  + V    +N +  +
Sbjct: 257 WRGANMENIMNFEHDYQKD------GVRTVKLEQNYRSTGHILSAANSVIKNNQNRKDKN 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         Q   Q+ ++        +       A  
Sbjct: 311 ---------------------LW-------TDQGEGQKVTYYQAQSGDDE-------AHY 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +                K+  +L R    +  +            I      
Sbjct: 336 IISKIQEEVKDKHR---------SYKNFAILYRTNAQSRTVEEAF----VKSNIPYQIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-- 466
                D   IKD+MA  + + +  D +S   ++ +P        + K+ T   +      
Sbjct: 383 GHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLLTFADDNHYTVL 442

Query: 467 ----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
               +      +     K       + + I  AQ  S       IL          +   
Sbjct: 443 DAMDHVAESPISTRAAKKLSDFGAKLRDAIAYAQTSSVTGLTEKILEDFDYTDALKAENT 502

Query: 523 NE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E    ++ LDEFL+ T R       E++  + L + ++E+               N+V 
Sbjct: 503 IESETRLENLDEFLSVTKRFDDHYEPEEDDSNPLSDFLAEVSLLSDQDDLDED--DNQVA 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFL+     +F  +                                
Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEDGLFPLQ-------------------------------- 588

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFH 690
                +  +  EE  RL YVG+TRA  +L +    +       + +    + D +     
Sbjct: 589 --RSMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDSKDL 646

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
           + E  +K++ +   +     +  ++                      +     
Sbjct: 647 HKEENEKLEGSFIKSSFAATSAPFARKAERARATVYTAKKASGAVGAEKKGWS 699


>gi|78221316|ref|YP_383063.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15]
 gi|78192571|gb|ABB30338.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15]
          Length = 742

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 111/757 (14%), Positives = 231/757 (30%), Gaps = 134/757 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  ++++    +    V                 + ++ + L  A     +   
Sbjct: 27  GAGSGKTRVIVHRIAHLICNLGVPPWQILAVTFTNKAAGEMRERVERLVGA-GEAPLIAT 85

Query: 66  FSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F    + FL +        +       ++  K   ++   L         +         
Sbjct: 86  FHSTCARFLRRDIHHLGYDSSFAIYDDKDAEKLLKEVIAGLGLDEKRFPARSFAAAIDDC 145

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           ++R        +   +  +   +   Y+E  KK   LDF DL++ T  LL++      + 
Sbjct: 146 KNRGIPPGEIPTGDYTGEMLARVYGAYQERLKKCNALDFGDLLMLTVRLLEEHPE---VL 202

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            +   +   IL+DE QDT+ IQ+ ++R L  +           R L  VGD+ QSIY + 
Sbjct: 203 ARYRDKYRWILVDEYQDTNPIQYRLVRLLAGE----------RRNLCVVGDDDQSIYRWR 252

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+ + +L  ++               ++L  ++RST +IL     V +     +  +  
Sbjct: 253 GADIRNILDFEKDFP--------GVVTVKLEQNYRSTQNILAAAGAVVAKNRGRKAKTLW 304

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           S                                 +   +    D   +       AR + 
Sbjct: 305 SENP----------------------------AGEAIVYRRLSDEREE-------ARFVC 329

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +   +                +D+ V  R    + +I            I        
Sbjct: 330 REVEKHVRRGGDL----------RDVAVFYRTNAQSRVIEDAMVAD----GIPYHMVGGM 375

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY 469
              + + +KD++A  + +++  D++S   ++  P        + K+      +   +Y+ 
Sbjct: 376 RFYERMEVKDILAYLKVLVNPADEVSLKRIINVPARGIGHATVDKVAELAFRKGIILYDA 435

Query: 470 IQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
             +       +     K    +  + +   +A      +  + I+       +      +
Sbjct: 436 FSEASTSGLLSTGPRGKIAGFMALMEQFAGLAGTVPLSELASRIIDGTGYAAKLKEERSD 495

Query: 524 EVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           E  D    L E  +     E+ +   +L   + ++                   +MT+H 
Sbjct: 496 EAQDRLDNLQELCSAMEEFERTSDEKTLAAFLEQVALVSDLE--RGEGKRESATLMTLHA 553

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVF++    ++F H                                       
Sbjct: 554 AKGLEFPVVFMIGMEEKLFPHVRSLDDP-------------------------------- 581

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL YVGMTRA ++LI+          +         + D   +   ++  +
Sbjct: 582 --EAMEEERRLCYVGMTRARERLILTNARRRRLFGQDQVNMSSRFIADVPRDLLDLED-E 638

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
             +S         E  T   E T        +  ++ 
Sbjct: 639 YQSSFGFGAGRGLERETTAAEPTRHNLASIFETEIEP 675


>gi|332040845|gb|EGI77217.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624]
          Length = 846

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 110/684 (16%), Positives = 208/684 (30%), Gaps = 115/684 (16%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YEE  ++  V+DF +L++ + +LL+     A +R    +   HILIDE QDT+ +
Sbjct: 208 ELYQLYEEQCQREGVVDFGELLLRSYELLRDH---APVREHYQRRFRHILIDEFQDTNKL 264

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  I+ L       +N       +FAVGD+ QSIY+F GA    +    R    +    
Sbjct: 265 QYAWIKLLAGQGASHENA------VFAVGDDDQSIYAFRGARVGNMADFVREFHVQ---- 314

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  ++RS ++IL   + + S  ++  G +  +           G    V++ 
Sbjct: 315 ----HQIKLEQNYRSYSNILDSANALISHNKHRLGKNLRTEQ---------GAGEPVRVV 361

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           E      ++Q    +       DS          +         + G++          I
Sbjct: 362 ESSSDFAEAQWLIDEIKQLIRDDSSAAPGRLKQASAP-------LGGSEDTPVPSVGANI 414

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             K++ VL R    + +I         +  I           +   IK  +A  R + + 
Sbjct: 415 ARKEMAVLYRSNAQSRVIETAL----FNSGIPYKVYGGLRFFERAEIKHALAYLRLLENP 470

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-----ETETVYEYIQKFANCGISKFQHVIK 486
            DD SF+ ++  P        I ++             +++  +   +    +     + 
Sbjct: 471 NDDTSFLRVVNFPPRGIGARSIEQLQDAARAANQGAGSSLHAAVNAMSGKAGANLSAFVA 530

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L    Q  +  +   L+L      + +   R G + I+ L+E +            
Sbjct: 531 KIDVLREQTQGLTLREIIELVLEHSGLVEHYRAEREGADRIENLEELVTAAESFVSIEGF 590

Query: 546 S--------------------LQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLE 584
                                L  L + L                + V++MTVH +KGLE
Sbjct: 591 GRDAEATAAAENAAPDADGEVLSPLAAFLTHAALEAGDNQAQDGQDAVQLMTVHASKGLE 650

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVF+      +F H++                                          
Sbjct: 651 FDVVFITGLEEGLFPHENSLSDFDG----------------------------------L 676

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           EE  RL+YV +TRA  +L +                                + +  + +
Sbjct: 677 EEERRLMYVAITRARKRLYLSLAQT----------------RMLHGQTRYHIRSRFLDEL 720

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
            ++             +    +        +                ++      +    
Sbjct: 721 PEETLKWVTPRNQGFGSGFTPQNSYGPGRGNGAGGGAWNSGWANASRSDSAYGRDTGSSL 780

Query: 765 KGKTNLESLLSDNQTFNRG-LIIH 787
                +E           G  + H
Sbjct: 781 SSSKVVEQAQEAATGLRIGMSVFH 804


>gi|156503119|ref|YP_001429184.1| DNA helicase II [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290953989|ref|ZP_06558610.1| DNA helicase II [Francisella tularensis subsp. holarctica URFT1]
 gi|295312608|ref|ZP_06803360.1| DNA helicase II [Francisella tularensis subsp. holarctica URFT1]
 gi|156253722|gb|ABU62228.1| DNA helicase II [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 740

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/758 (16%), Positives = 233/758 (30%), Gaps = 146/758 (19%)

Query: 5   FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43
            GL+  +    + +D                  ++   L  + G                
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89
             I ++ + +   S        F  ++   L +                  Q  ++ + I
Sbjct: 68  KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           N    D K+   K    FI  + +    +  K T        ++   YEE  + +  LDF
Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            DL+++  +L         +R     +  +ILIDE QDT+ +Q+  ++ L  D       
Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 + AVGD+ QSIY + GA    +    +  +           II+L  ++RST +
Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL V + V    +N                         +LW        +  + ++   
Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVVL 317

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               +   +       A+ I   I  +              +   DI +L R    + ++
Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                       I       F   D   IKD +A  R  ++  D+L+F  ++ +P     
Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416

Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502
              +  I    +  + + ++                S     I+ I  +       S   
Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDK 476

Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553
               ++        +         + ID L E ++     E       ++   LQ+ +S 
Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                           + V++MT+H +KGLE   VFLV     VF    I          
Sbjct: 537 AVLEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            +  +      +    E  RL YV +TRA   L I      S  
Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMRALTISYAQVRSIF 632

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            +S+ +     V +         K++ T +  K +  A
Sbjct: 633 GRSSFQVKSRFVTEIDSQHLSQGKLEFTAAKPKTKQKA 670


>gi|89256929|ref|YP_514291.1| DNA helicase II [Francisella tularensis subsp. holarctica LVS]
 gi|115315293|ref|YP_764016.1| DNA helicase II [Francisella tularensis subsp. holarctica OSU18]
 gi|167009993|ref|ZP_02274924.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC200]
 gi|254368194|ref|ZP_04984214.1| DNA helicase II [Francisella tularensis subsp. holarctica 257]
 gi|89144760|emb|CAJ80095.1| DNA helicase II [Francisella tularensis subsp. holarctica LVS]
 gi|115130192|gb|ABI83379.1| DNA helicase II [Francisella tularensis subsp. holarctica OSU18]
 gi|134254004|gb|EBA53098.1| DNA helicase II [Francisella tularensis subsp. holarctica 257]
          Length = 740

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 127/758 (16%), Positives = 233/758 (30%), Gaps = 146/758 (19%)

Query: 5   FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43
            GL+  +    + +D                  ++   L  + G                
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89
             I ++ + +   S        F  ++   L +                  Q  ++ + I
Sbjct: 68  KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           N    D K+   K    FI  + +    +  K T        ++   YEE  + +  LDF
Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            DL+++  +L         +R     +  +ILIDE QDT+ +Q+  ++ L  D       
Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 + AVGD+ QSIY + GA    +    +  +           II+L  ++RST +
Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL V + V    +N                         +LW        +  + ++   
Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVVL 317

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               +   +       A+ I   I  +              +   DI +L R    + ++
Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                       I       F   D   IKD +A  R  ++  D+L+F  ++ +P     
Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416

Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502
              +  I    +  + + ++                S     I+ I  +       S   
Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELISGISAQINQHSLDK 476

Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553
               ++        +         + ID L E ++     E       ++   LQ+ +S 
Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                           + V++MT+H +KGLE   VFLV     VF    I          
Sbjct: 537 AVLEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            +  +      +    E  RL YV +TRA   L I      S  
Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMRALTISYAQVRSIF 632

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            +S+ +     V +         K++ T +  K +  A
Sbjct: 633 GRSSFQVKSRFVTEIDSQHLSQGKLEFTAAKPKTKQKA 670


>gi|94994523|ref|YP_602621.1| DNA helicase II [Streptococcus pyogenes MGAS10750]
 gi|94548031|gb|ABF38077.1| DNA helicase II [Streptococcus pyogenes MGAS10750]
          Length = 772

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 116/650 (17%), Positives = 204/650 (31%), Gaps = 123/650 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  LDF+DLI+ T  L    D +  +     Q   +I +DE QD
Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++I+ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLIKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TISNM          +
Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +     KD  VL R    +  I            I               I+DL+A    
Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481
           + +  D++SF  ++  P        + K+        +++ E                  
Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   + +L       S  D    +L           +   E    I+ ++EFL+ T  
Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516

Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +++             L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                              EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   KS+       + +        K +      +    
Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            + E  T   +   L      ++   + +   +              + P
Sbjct: 661 FSTETHTQFGQGMSLSEALQARKTQAQVRQSAQPMQAHTIPSASTSSVLP 710


>gi|71903614|ref|YP_280417.1| DNA helicase II [Streptococcus pyogenes MGAS6180]
 gi|139473666|ref|YP_001128382.1| DNA helicase II [Streptococcus pyogenes str. Manfredo]
 gi|71802709|gb|AAX72062.1| DNA helicase II [Streptococcus pyogenes MGAS6180]
 gi|134271913|emb|CAM30151.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str.
           Manfredo]
          Length = 772

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 116/650 (17%), Positives = 204/650 (31%), Gaps = 123/650 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  LDF+DLI+ T  L    D +  +     Q   +I +DE QD
Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++I+ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLIKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TISNM          +
Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +     KD  VL R    +  I            I               I+DL+A    
Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481
           + +  D++SF  ++  P        + K+        +++ E                  
Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   + +L       S  D    +L           +   E    I+ ++EFL+ T  
Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516

Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +++             L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                              EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   KS+       + +        K +      +    
Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            + E  T   +   L      ++   + +   +              + P
Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLP 710


>gi|306833580|ref|ZP_07466707.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338]
 gi|304424350|gb|EFM27489.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338]
          Length = 771

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 102/658 (15%), Positives = 204/658 (31%), Gaps = 125/658 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDQNPD---VLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPE- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 272 -------AKVVLLEENYRSTKKILQAANAVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI N++  +       
Sbjct: 306 --LW-------TQNADGEQIVYYRARDEREE-------AVFVASTIDNIVREEGK----- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 345 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANTADNISYERIVNEPKRGVGPGTLEKIRDFANMQNMSLLDASANIMLSGVKGKAAQAV 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   + +        +  +    +L           +   E    I+ ++EFL  T  
Sbjct: 457 WDLANLLMKFRDDLDQMTVTELVEAVLDKTGYLDALRVQNTLESQARIENIEEFLTVTKN 516

Query: 539 NE---------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +         ++    L   +++L     T           V +MT+H AKGLE P+VF
Sbjct: 517 FDDNQEDAPEDESGIDKLSRFLNDLALIADTDDGDAETAE--VTLMTLHAAKGLEFPIVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                          +   EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RAAEDQDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA   L +   +  +   K++       + +      + + +    + +    
Sbjct: 601 LAYVGITRAEQLLFVTNANTRTLFGKTSYNRPSRFIREIDDELLQYQGLARPANSSFGVR 660

Query: 710 --IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
              + +      +   L++    ++   +    +      K     P   + S     
Sbjct: 661 YSNSSDEQLTFGQGMSLQQALQARKAKVQPTSSRGAQPFSKAGKAVPVGQSASASKEA 718


>gi|225351915|ref|ZP_03742938.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157162|gb|EEG70501.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 905

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 118/727 (16%), Positives = 219/727 (30%), Gaps = 123/727 (16%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P   +  +S  +      +      I      L          +  
Sbjct: 90  AAAEMRERLASLVGPEAEHMWISTFHSACVRILRRDGKEI-----GLTSGFSIYDTADC- 143

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA- 125
             L            K    + +  K  D K  L   QD+   +   +   +      A 
Sbjct: 144 ERLVKLISGDLNIDTKRYTPRMLLGKISDCKNSLISWQDQLKSVNCDYKPGQRGYQVSAG 203

Query: 126 -SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
               L   + A Y+        +DF+DLI+ T +L ++      +      +  +I +DE
Sbjct: 204 DVDELVAVMYAEYQYRLAMANAVDFDDLIMRTVELFQR---CPQVSEYYRHKFRYIFVDE 260

Query: 185 VQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            QDT+  Q+ ++R L+        D  +       P  +  VGD  QSIY+F GA+ + +
Sbjct: 261 YQDTNHAQYVLVRELSGIDSGEQPDPHMRGAGRVGPSWITVVGDSDQSIYAFRGADIRNI 320

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              ++               I L  ++RST  IL   + V +  EN +            
Sbjct: 321 QDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIARNENRKPKK--------- 363

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                       LW  +                          +A   A  IA  I+ + 
Sbjct: 364 ------------LWTALGEGDKIVGYAA--------------DNAQQEAGWIANEIARIH 397

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
             +          +  +DI ++ R    +  +         +  +           +   
Sbjct: 398 NEE---------GVAYRDIAIMYRANAQSRSLEEAM----INANLPYQLVGGTKFYERRE 444

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKFAN- 475
           IKD +A  + I++  D+++   +L  P                     T +E I+     
Sbjct: 445 IKDALAYLQAIVNPADNVNVRRILNVPKRGLGVRAEGLVASYADAHGTTFFEAIEHMEQI 504

Query: 476 -----CGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
                            +HEL   A      P +    +L      ++       +    
Sbjct: 505 EGMSTRTTKPLSAFRDMMHELAAFAKDHDTKPSEVVAEVLAKSGILEELQRSEDPQDASR 564

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583
           +D L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKGL
Sbjct: 565 VDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHTAKGL 624

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P VFL       F H+                                        S 
Sbjct: 625 EYPYVFLTGMEQGTFPHQ----------------------------------RAMEDTSE 650

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             E  RL YVG+TRA  +L + + +  +   +++       + +        K+ +    
Sbjct: 651 LAEERRLAYVGITRAKRRLYVTRAAVRAQWGQASDMMPSQFLDEIPDELIDWKRREAGVE 710

Query: 704 INKDEWI 710
             +  W 
Sbjct: 711 RMRASWQ 717


>gi|299146105|ref|ZP_07039173.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23]
 gi|298516596|gb|EFI40477.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23]
          Length = 792

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 100/677 (14%), Positives = 212/677 (31%), Gaps = 125/677 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y +  ++   +DF+DL++ T  L +       +  +   +  ++L+D
Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPE---VLARYRDQFRYVLVD 228

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +I
Sbjct: 229 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKI 278

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E     +  S            
Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +A  I+ +       
Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 351

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       I               IKD++A
Sbjct: 352 -----YRYGYADFAILYRTNAQSRIFEEALR----KQSIPYKIYGGLSFYQRKEIKDVIA 402

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P+    +  + KI +       +++  + +          
Sbjct: 403 YFRLVVNPNDEEAFKRIINYPVRGIGDTTVGKIISAATDHGVSLWAALCEPLSYGLDINK 462

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +K Q   + I   I      + ++  T I+               E     + ++E 
Sbjct: 463 GTHAKLQGFRELIEGFIVDQADKNAYEIGTNIIRQSGIINDVCQDTSPENLSRKENIEEL 522

Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N         + E N   SL + +SE+           + +   + +MTVH+AKGLE  
Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGERITLMTVHSAKGLEFK 581

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   +          K    +    + D   +  ++      +    
Sbjct: 608 ERRLFYVAITRAEEHCYLSFAKTRFRYGKMEFGSPSRFLRDIDVHYLQLPHEAGVSRAVD 667

Query: 707 DEWIAYEWSTH----HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
           +    +            +       +      E+   + + S +  ++ +   ++PS+ 
Sbjct: 668 EGAGRFRREIEGGFTRSASPSRAPFGSTSSEQRERPKAQIIASSVPRNLKKVSTVSPSSG 727

Query: 763 DTKGKTNLESLLSDNQT 779
                +   S+      
Sbjct: 728 AQATSSTSPSVAGVQAG 744


>gi|322375245|ref|ZP_08049758.1| ATP-dependent nuclease subunit A [Streptococcus sp. C300]
 gi|321279508|gb|EFX56548.1| ATP-dependent nuclease subunit A [Streptococcus sp. C300]
          Length = 801

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 135/839 (16%), Positives = 275/839 (32%), Gaps = 124/839 (14%)

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F  A+P+    +
Sbjct: 1   MVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNEK 49

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +   +      ++  +I L  +FRS++++L+  + VF    + +    +  +  +   +
Sbjct: 50  FQRYAQ----NPKEGKLILLKENFRSSSEVLSATNDVFERLMDQEVGEINYNSMHQLVFA 105

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                    ++      +    ++  +   R +   I  +    
Sbjct: 106 NTK-------LTPNPDNKAEFLLYDKDDSEQEEEESQTDTKLTGEMRLVLKEILKLHQE- 157

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIK 419
                   + +  K+I +L   R              ++Y I V  +         L +K
Sbjct: 158 --------KGVAFKEIALLTSSRSR----NDQILLALSEYGIPVKTDGEQNNYLQSLEVK 205

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
            ++   R I +   D + V ++KSP+F+F ED++ ++  Q+ E +      +K  N    
Sbjct: 206 VMLDTLRVIHNPLQDYALVALMKSPMFSFDEDELARLSLQKIEDKAQENLYEKLVNAQKL 265

Query: 479 -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                         K    +  +      A+  S +D    I   +       +   G  
Sbjct: 266 ATSQKNLIYTALAEKLNQFMDILDSWRLYAKTHSLYDLIWKIYNDRFYYDYVGALPNGPA 325

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTA 580
               L        + E++++  L   I  ++Q           A +   + V ++T+H +
Sbjct: 326 RQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELLTIHKS 385

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD------------PGIPIWIPQSKSR 628
           KGLE P VF+++          +  + +                           +    
Sbjct: 386 KGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYIAKVETGAVEAHYPKTIKLSIP 445

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------- 675
           +   +   K L+ ++  E  RLLYV MTRA  +L +    +    +              
Sbjct: 446 SLTYTQNEKELQLASYSEQMRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPAANNGKLDS 505

Query: 676 ------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP----ENTPLE 725
                  N + W   +   F  D      +             +     P          
Sbjct: 506 NTRLQARNFQDWVWAISKVFTKDNLNFSYRFVGEDLLTREAIGQLENKSPLQDSSQADNR 565

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------- 768
           + ETIK+ ++  K  +   +  +  I  P +  PS I    +                  
Sbjct: 566 QSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEITNQTQSSE 625

Query: 769 -------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                     S          G   H+L+Q I  + +    +   +              
Sbjct: 626 KKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLIQQPTLASLTETL---KQVQTSPAVR 682

Query: 822 KNL-LLSITRLLENPMMTTAMSC--DSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
             + L  I    +  +    ++     Y E   S   K    K+D ++ G +D   + + 
Sbjct: 683 DKINLSKILAFFDTALGQEILANTSHLYREQPFSMLKKDQKSKEDFVVRGILDGYLLYED 742

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            I +F+YKT  +   E   +   +  QL++Y + L  +Y  +++   LI + + +V ++
Sbjct: 743 RIVLFDYKTDRY--DEPSQLIDRYRGQLALYGEALSRAYSIENIEKYLILLGKDEVQVV 799


>gi|118619792|ref|YP_908124.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99]
 gi|118571902|gb|ABL06653.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99]
          Length = 769

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 107/640 (16%), Positives = 191/640 (29%), Gaps = 121/640 (18%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           I        + + +         + A Y+   +    LDF+DLI  T  +L+       I
Sbjct: 160 IDPDRAVSDLSEDSDDLARTVASVYAEYQRRLRAANALDFDDLIGETVGILQ---AFPDI 216

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   H+L+DE QDT+  Q+ ++R L       +     P  L  VGD  QSIY+F
Sbjct: 217 AGHYRRRFRHVLVDEYQDTNHAQYVLVRELVGRGSEDEPGDVPPAQLCVVGDADQSIYAF 276

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + +   +R             + I L  ++RST +IL+  + V S     +    
Sbjct: 277 RGATIRNIEDFERDYP--------DATTILLEQNYRSTQNILSAANSVISRNSGRREKR- 327

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +        +   +       AR +
Sbjct: 328 --------------------LW-------TDAGAGELIVGYVADNEHDE-------ARFV 353

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I  +   D          I   D+ V  R    +  +  +         I       
Sbjct: 354 AEEIDALAERDE---------ITYSDVAVFYRTNNSSRSLEEVF----IRAGIPYKVVGG 400

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE- 468
               +   I+D++A  R + +  D +S   +L +P     +     +      T   +  
Sbjct: 401 VRFYERKEIRDIVAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGAGFSD 460

Query: 469 --------YIQKFANCGISKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFI 518
                    +    +         ++ + EL     +      +    +L     R++  
Sbjct: 461 ALVAAAEGKVPMLNSRAEKAIAGFVELLDELRGRLDSSEGDVGELVEAVLERTGYRRELE 520

Query: 519 SRFGNE---VIDVLDEFLNFTLRN------------EQNSYSSLQELISELEQYPPTIKR 563
           S    +    +D L+E ++                 +         L + LE+       
Sbjct: 521 SSTDPQELARLDNLNELVSVAHEFSTDLANAAEPEPDAEDVPDTGMLAAFLERVSLVADT 580

Query: 564 AHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                H    V +MT+HTAKGLE PVVF+      +F H                     
Sbjct: 581 DDIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDPT------------- 627

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                                   E  RL YVG+TRA  +L + +    S+  +      
Sbjct: 628 ---------------------ELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLNPE 666

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
              + +        +++    S +     A  + T     
Sbjct: 667 SRFLREIPQELLNWRRLAPKPSFSAPVSGAGRFGTARSAP 706


>gi|293373822|ref|ZP_06620166.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f]
 gi|298481100|ref|ZP_06999294.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22]
 gi|292631221|gb|EFF49855.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f]
 gi|298272674|gb|EFI14241.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22]
          Length = 792

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 100/677 (14%), Positives = 212/677 (31%), Gaps = 125/677 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y +  ++   +DF+DL++ T  L +       +  +   +  ++L+D
Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPE---VLARYRDQFRYVLVD 228

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +I
Sbjct: 229 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKI 278

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E     +  S            
Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +A  I+ +       
Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 351

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       I               IKD++A
Sbjct: 352 -----YRYGYADFAILYRTNAQSRIFEEALR----KRSIPYKIYGGLSFYQRKEIKDVIA 402

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI +       +++  + +          
Sbjct: 403 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATDHGVSLWAALCEPLSYGLDINK 462

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +K Q   + I   I      + ++  T I+               E     + ++E 
Sbjct: 463 GTHAKLQGFRELIEGFIVDQADKNAYEIGTNIIRQSGIINDVCQDTSPENLSRKENIEEL 522

Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N         + E N   SL + +SE+           + +  ++ +MTVH+AKGLE  
Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 581

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   +          K    +    + D   +  ++      +    
Sbjct: 608 ERRLFYVAITRAEEHCYLSFAKTRFRYGKMEFGSPSRFLRDIDVHYLQLPHEAGVSRAVD 667

Query: 707 DEWIAYEWSTH----HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
           +    +            +       +      E+   + + S +  ++ +   ++PS+ 
Sbjct: 668 EGAGRFRREIEGGFTRSASPSRAPFGSTSSEQRERPKAQIIASSVPRNLKKVSTVSPSSG 727

Query: 763 DTKGKTNLESLLSDNQT 779
                +   S+      
Sbjct: 728 AQATSSTSPSVAGVQAG 744


>gi|291556731|emb|CBL33848.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Eubacterium siraeum
            V10Sc8a]
          Length = 1235

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 153/978 (15%), Positives = 305/978 (31%), Gaps = 180/978 (18%)

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------------YKMFKSTLASLTLAK 131
              +E   +    ++ +K  ++    I +++                K   +  A   L  
Sbjct: 285  FPKERAPQDRSAEKLVKAHREAVKSIFEKYFIKTCDKITSFGSDMAKSLPAVTALKNLVL 344

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
              +  Y   K++    DF D       +L +         +   + + I++DE QD++ +
Sbjct: 345  CFDKAYSAEKQRRNCADFSDAERGVYRMLCENGEKV----RERADFSLIIVDEFQDSNRL 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+E+ + LTE+           + L+ VGD KQSIY F GA+P       +         
Sbjct: 401  QYEIFKMLTEN----------KQGLYFVGDIKQSIYGFRGAQPSVFSAICK--------- 441

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               F  + L  +FRS   ++  ++ +F      +    D     R             L 
Sbjct: 442  SDDFDKLPLNENFRSNRCVIDGINTLFDRMMTEENGGVDYAENGR-------------LI 488

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              +    DS  + + ++         ++++    A  IA  I+ MI       + K R  
Sbjct: 489  CGLEKDSDSPISDEDKTEVCIVSEKDRKNAVVTEAAYIAARINQMIAQGYKVGSDK-RPC 547

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               D  +++R  K+   I      L  +  ++V  N R +L D   I+ +++L + I   
Sbjct: 548  TEDDFAIIMRSPKN--RIADYVNVLTAN-GLNVTYNQRAVLLDRPEIRLMLSLLKVINDP 604

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKI--------------------------------CTQ 459
             +D     +L SPL+ F+ DD+ ++                                  +
Sbjct: 605  YNDTELAKVLMSPLYCFTADDMARLRTGTFGFDISKIRAECADELEKYCLGTKEIVGMKR 664

Query: 460  RHETETVYEYIQKFANCGISKFQH-------------VIKYIHELIHIAQFCSPHDFFTL 506
            +     V + ++ +      K                 +  +    + A   SP +    
Sbjct: 665  KPLYSCVMQAVRGYDTSEYEKLHELTKDIKPDAKCAVFVNNLDSFRNAATASSPQELIRN 724

Query: 507  ILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRA 564
            I       +   +          L+  +++           +L +LI  LE         
Sbjct: 725  IYDRISADELLSVGDDPATRQANLELLVSYAREYSDYKDGGTLGDLIFNLENMSSLTAAQ 784

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             +  H  V+IM+ H +KGL+ PVVF+ +  S      ++  + I                
Sbjct: 785  TAGGHG-VKIMSTHMSKGLQFPVVFVANCASLFNPDDYMGDVVISEEYAVASKSVDISTM 843

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT------------SN 672
            SK ++       + +KK  + E  RLLYV  TRA ++LI   + +               
Sbjct: 844  SKIQSPAYHAAAQEVKKQLESEEMRLLYVAATRAENKLIFTANISKACDEYMSLLDVNRT 903

Query: 673  EKKSNQRTWYDMVYDSFH-----------------NDERVKKIKLTNSINKDEW------ 709
             KK  + +    +                      +   V+ I    +   DE       
Sbjct: 904  GKKVGKCSGSSYLSWLIEALSAECDKVNDMQSGIIDYGDVRYIFYPLAYEGDEHSLTIPA 963

Query: 710  --IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
                 E +  + ++   +  +         ++ KKL +    +         +  +    
Sbjct: 964  LNTGAENADEYTDDKNNDSTDIAVDEQFRSELEKKLNAAYTYEPLTKISAKFTATELAAN 1023

Query: 768  TNLESLLS------------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
               ++                           RG   HKL++ I                
Sbjct: 1024 LREKNGEENYGLFIGKPSFLTENNTGKLSGKRRGDAYHKLMEHIPFEKILSEDEISDYIK 1083

Query: 810  TKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD----SYSEVSVSGKIN-------- 856
               A      E  ++    I     N +    +  D     Y E  +  +++        
Sbjct: 1084 NSTAGFLDKAEQNSIDAGDIAGFYGNDVAKRIVKADKNGKLYREYPIFHRLDTQCYDPAI 1143

Query: 857  --------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                        +  + G  D   I    I + +YKT      + +     +  QL IY+
Sbjct: 1144 FGADSREMLEGAEPYVQGIADMFFIEDDGIVLVDYKTDKT--DDEQKYKDDYKLQLDIYK 1201

Query: 909  KILKDSYPNKSLVCLLIY 926
            + L+  +    +  ++IY
Sbjct: 1202 EALEKEFSV-PVKQMIIY 1218


>gi|169343377|ref|ZP_02864381.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str.
           JGS1495]
 gi|169298463|gb|EDS80549.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str.
           JGS1495]
          Length = 1271

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 124/645 (19%), Positives = 224/645 (34%), Gaps = 55/645 (8%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             F  L S         +    T+ +  +S  + E L+ +  E           KM+   
Sbjct: 279 ASFGRLKSVRKASVDDEKALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178
                L    +  Y + K++  +LDF DL     ++L  +D       + +  +      
Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDRFE 398

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +L+DE QD++ IQ  ++  ++               +F VGD KQSIY F  A P+  L
Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDIKQSIYKFRQANPELFL 451

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296
            +    ++           I L  +FRS  +I+  V+ +F    +     L  D    + 
Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343
             +S           E +    + +     E             +     +      S  
Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSNEDELGEEEEDLDSIQ 567

Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           + AR I   I  ++  +            GK R I+ KDI++L+R  K+           
Sbjct: 568 LEARIIGKKIKELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              Y I V  +        + I+ ++AL   I +   D+  +  L+SP+F+F+ ++   +
Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684

Query: 457 CTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                +              Y +  +     K ++ + Y+++    A +    +F   + 
Sbjct: 685 RLLNRDKYFFEIIKEVVDGTYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562
                         G +    L        + E  S+  L   I+ +             
Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +    N N VRIM++H +KGLE PVV L  TG Q       + + +  +L          
Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            + K        + K  +     E  R+LYV  TRA ++LII   
Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGA 909



 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 19/187 (10%)

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
            E    +     +G I H ++Q I                    K    +E   ++    I
Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144

Query: 829  TRLLENPMMTTAM-----SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871
             +  ++ +    +         Y E+    +I               ++ + + G ID  
Sbjct: 1145 QKFFKSDLGQRMLNSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
               +    + +YKT +    E E     +  Q+++Y+  L      +     L      +
Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEEDFINKYKIQINLYKDTLNKILVEEVKEAYLYSFYLER 1264

Query: 932  VFIIPQN 938
               I + 
Sbjct: 1265 ELKISKE 1271


>gi|161507067|ref|YP_001577021.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571]
 gi|160348056|gb|ABX26730.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571]
          Length = 748

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/692 (17%), Positives = 215/692 (31%), Gaps = 135/692 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   QV+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMREREQKLLGPAAQNIWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106
           F  L    L +            I   +  L                   +  L    + 
Sbjct: 90  FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILSAISNG 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D         ++     +A  +   Y+   +++ ++DF+DLI+ T  L KK   +
Sbjct: 150 KNDLLD--PKAFAASASSPFDKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
               +    +  +IL+DE QDT+  Q+E+  +L   +          + +  VGD  QSI
Sbjct: 208 ---LHYYQNKFRYILVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + ++  +   +K           ++L  ++RST  IL+  + V    +N + 
Sbjct: 255 YGWRGANMENIMNFESDYKKD------GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW         Q    + ++        +       A
Sbjct: 309 KN---------------------LW-------TDQGEGAKVTYYQAQSGDDE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I   I   +           +    KD  +L R    +  +            I    
Sbjct: 334 HYIISKIKEEVEA---------KKRTYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET- 465
                  D   IKD+MA  + + +  D +S   ++  P        + K+     E    
Sbjct: 381 VGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPKRGIGAATVDKLLAFADENHYN 440

Query: 466 -----VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                 +            K       + + I  AQ          IL   +      + 
Sbjct: 441 ALDAMDHVAESPINTRTAKKLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYSSLQE---LISELEQ-YPPTIKRAHSANHNEVR 573
              E     + LDEFL+ T R + +      E   L   L +    + +     + N+V 
Sbjct: 501 NTIEAETRLENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVA 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F  +                                
Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEDGLFPLQ-------------------------------- 588

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                +  +  EE  RL YVG+TRA  +L + 
Sbjct: 589 --RAMMDDNELEEERRLAYVGITRAKKELYLT 618


>gi|212696136|ref|ZP_03304264.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676765|gb|EEB36372.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 730

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 102/616 (16%), Positives = 204/616 (33%), Gaps = 118/616 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +  +YE+ K +   LDF+DLI+ T DL                +  ++ +DE QDT+  Q
Sbjct: 171 IYKNYEKKKFEYNSLDFDDLILKTLDLFASDP---NTLKYYQNKFEYVYVDEYQDTNKSQ 227

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+I+++                +  VGD  QSIYSF GA+   +L  ++  +       
Sbjct: 228 YELIKAI----------GKLHNNITVVGDADQSIYSFRGADINNILDFEKDFKN------ 271

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RST++I+ V +K+       +  +                     LW 
Sbjct: 272 --AKTIKLEQNYRSTSNIINVANKLIRNNTERKDKN---------------------LW- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  SQ +  +  +        +        + +   I++++              +
Sbjct: 308 ------TSQNDGSEVLYKKSSVESEEG-------KFVIDEINSLLNDG----------YK 344

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            KD+ +L R    + +          D              D   IKDL++  + +++ +
Sbjct: 345 LKDMAILYRMNAQSRIFEEYLMKNLLD----YKVVGGLKFYDRKEIKDLISYLKVLVNPK 400

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVI 485
           DD+S   ++  P        I  +  +         E                +  +   
Sbjct: 401 DDISLKRIINEPKKGIGNKTIENLEKEASKLGFSLTELVCDPSLFSNLPTKLKTSCEKFY 460

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             + E+    +     D    +L      +     +  E    ID L+EF++     E N
Sbjct: 461 NPLSEIFDNYEDYKIVDLIEEVLDKSGYIKALEESYSVENRSRIDNLNEFISSAAEYESN 520

Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      +   LE             + + + +MT+H+AKGLE  V F+V     +F  K
Sbjct: 521 NPED--NIHDYLENLSLLSDLDKTEESDDSISLMTIHSAKGLEFKVCFVVGMDDGLFPSK 578

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +   EE  RL YV +TRA ++
Sbjct: 579 RSID-----------------------------------EGNIEEERRLCYVAITRAMEK 603

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +          ++        + +   + +++ + K        +  + E        
Sbjct: 604 LYLSSAEIRRQFGQAVYYKPSRFLSEIKSSIKQIDQDKTPAYSPYVKMRSNEAYMRDKAR 663

Query: 722 TPLEREETIKQLMDEQ 737
             + ++ T+K+   E+
Sbjct: 664 ESVLKKNTVKESSKEE 679


>gi|306827259|ref|ZP_07460546.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782]
 gi|304430406|gb|EFM33428.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782]
          Length = 772

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 116/650 (17%), Positives = 204/650 (31%), Gaps = 123/650 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  LDF+DLI+ T  L    D +  +     Q   +I +DE QD
Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++I+ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLIKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TISNM          +
Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +     KD  VL R    +  I            I               I+DL+A    
Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481
           + +  D++SF  ++  P        + K+        +++ E                  
Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   + +L       S  D    +L           +   E    I+ ++EFL+ T  
Sbjct: 457 MDLANSLGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516

Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +++             L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                              EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   KS+       + +        K +      +    
Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            + E  T   +   L      ++   + +   +              + P
Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLP 710


>gi|119493842|ref|ZP_01624409.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106]
 gi|119452434|gb|EAW33623.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106]
          Length = 784

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 107/622 (17%), Positives = 208/622 (33%), Gaps = 103/622 (16%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           +     S F  +   +  K I+T+E+N      + +  K + +    ++   + + ++  
Sbjct: 142 QWQQNFSIFDESDAQSLVKQIVTKELNLDDKKFEPR--KVRYQISNAKNLGLSPQAYQRE 199

Query: 124 LASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                  +   +   Y++    N  LDF+DLI    +L ++ +    +     Q+ NHIL
Sbjct: 200 NPEYYGRVISEVYGKYQDRLAANNALDFDDLIRVPVELFQQNE---QVLAYWHQKFNHIL 256

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           +DE QDT+  Q+++IR L  +    ++  +   R++F VGD  QSIYSF  A+   +L  
Sbjct: 257 VDEYQDTNRTQYDLIRLLVTNGEHPRSFKNWKNRSIFVVGDVDQSIYSFRMADYTILLEF 316

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           ++       +   + ++I+L  ++RS  +IL V +++                    R +
Sbjct: 317 QQDFGDGLADDDTR-TMIKLEDNYRSRENILEVANQLILNNTTRIEKV--------LRPT 367

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
           R                                    Q  + +  A  I   I N+    
Sbjct: 368 RGEGPPV---------------------------YCYQADNEAAEASFIVTQIKNLTEQ- 399

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +      +L R    +  +            I           D   IKD
Sbjct: 400 -------HPELGYGSFALLYRVNAQSRALEDAF----IKSNILYKVVGGLKFYDRKEIKD 448

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------F 473
            ++  R I +  D +S + ++ +P     +  I  +     +    ++E +         
Sbjct: 449 AISYLRMIANPADSVSLMRIINTPRRGIGKTTIDNLVNASQQLGVPLWEIVSDQDSVNTI 508

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLD 530
           A           + I      A   +  +    ++          ++  +E     + + 
Sbjct: 509 AGRSAKAVNQFAQMISSWQEKAASSTALEILEGVMEDSDYILDLSNQSTDEAESRLENIK 568

Query: 531 EFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           E  N   + +++   S L   ++                   V +MT+H+AKGLE P+VF
Sbjct: 569 ELSNAVAQFQEDYEDSTLGGFLANASLASDLDN--LQEGEQAVSLMTLHSAKGLEFPIVF 626

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           LV     +F +       +                                    EE  R
Sbjct: 627 LVGLEQGLFPNFRSLDDPLS----------------------------------LEEERR 652

Query: 650 LLYVGMTRASDQLIICKHSNTS 671
           L YVG+TRA +QL +       
Sbjct: 653 LCYVGITRAQEQLFLSHARERR 674


>gi|296454009|ref|YP_003661152.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183440|gb|ADH00322.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
          Length = 897

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 117/727 (16%), Positives = 222/727 (30%), Gaps = 123/727 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +     +I      L+         +  
Sbjct: 75  AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123
             L     T+     K    + I  +  DLK  L   ++        F        F + 
Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGRISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A YE        +DF+DLI  T +LL+       +         +IL+D
Sbjct: 189 DDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245

Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L                  S P  +  VGD  QSIY+F GA+ + 
Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++               I L  ++RST  IL   + V S  E  +           
Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +          +     +  +       A   A+ +A  I+ +
Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +          I   D+ ++ R    +  +         +              +  
Sbjct: 383 HAEE---------GISYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471
            IKD +A  + +++ +DD++   +L  P     +      +   R    + +  +     
Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489

Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
            +      +  +     +  L     A    P +    +L     R +       +    
Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTHAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583
           ++ L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKGL
Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL       F H                                         + 
Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +E  RL YVG+TRA  +L + + +  S   ++        + +   +    K+ +    
Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695

Query: 704 INKDEWI 710
             +  W 
Sbjct: 696 RMRANWE 702


>gi|116328207|ref|YP_797927.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330931|ref|YP_800649.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120951|gb|ABJ78994.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124620|gb|ABJ75891.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 730

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 107/572 (18%), Positives = 189/572 (33%), Gaps = 115/572 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YE+ K  N   DF DLI  T  L +K   +     K   +  ++++DE QDT+
Sbjct: 169 VSAIYKEYEKRKDANRAFDFGDLIWKTVQLFQKSPDAI---AKYRHKWEYVMVDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q++++  L  +           R L  VGD+ QSIYS+ GA+   +L  ++   +   
Sbjct: 226 KVQYQLVLLLAGE----------KRNLCVVGDDDQSIYSWRGADIGNILNFEKDFPES-- 273

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 ++I+L  ++RS+++I+    KV S     +     +            +   V 
Sbjct: 274 ------TVIKLEENYRSSSNIILAASKVISNNTQRKQKEIFTNNP---------KGSPVV 318

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L                           +  + S  A  +   I +     T        
Sbjct: 319 L--------------------------NEFENESEEAHGVITRIRSAYSYGT-------- 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + K+I +  R    +       R L     I       F   D   IKD +A    + 
Sbjct: 345 --EYKNIAIFYRTNSQSRYFEEALRNL----GIPYKIFGGFRFFDRAEIKDFIAYLSVVS 398

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKF----QHV 484
           +  D +S + ++  P     +  I KI      +  ++ E + +             + +
Sbjct: 399 NPLDSVSLLRIVNYPPRGIGDSGIGKIREFSLEKGISLLEALGQEDIPLKKAAKSKGKEL 458

Query: 485 IKYIHELIHIA-QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
                +LI    +  SP +    +L               E    ++ L E +N     E
Sbjct: 459 YSLFSDLIEKVEKSSSPSEIALELLNRSGLVSHLRDEGTEESIARLENLQELVNSIEEYE 518

Query: 541 Q-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +   SL+E ++++               + V +MTVH AKGLE  +VFL       F 
Sbjct: 519 KNSDSPSLEEYLNQISLITSEE--ESKELTDYVNLMTVHNAKGLEFKIVFLSGLEEGTFP 576

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H    +                                       EE  RL YV +TRA 
Sbjct: 577 HSMSLEDSHFGD---------------------------------EEERRLFYVALTRAR 603

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           +QL +     +    K   R     + +    
Sbjct: 604 EQLFLSYCRTSRKFGKVEDRIPSRFLSEIPEE 635


>gi|328951963|ref|YP_004369297.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
 gi|328452287|gb|AEB08116.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
          Length = 1137

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 153/939 (16%), Positives = 319/939 (33%), Gaps = 80/939 (8%)

Query: 27   QVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT-----PQ 81
               + + +     + G        +++ +A  +   +  +  ++   LT++ +     P 
Sbjct: 249  LGRNWSAFYRYLADAGAGLADDLPESIPEAQVSALPD--WGKIARGLLTKEGSCYRTFPA 306

Query: 82   KNIITQEINKK-----SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
            ++   +++ +        +L E L        +            +    + L       
Sbjct: 307  RSGFPKKMRESVWGGLLQNLPETLVPQLRRLKEQPSILLQPDEVPAVQDLIILLNQALTA 366

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            YEE  +   VLDF  L     +LL  +++   + +++D+ ++H+L+DE QDTS  Q E++
Sbjct: 367  YEELCQTRRVLDFSALEQAALNLLSDKNIPD-LLWRLDRRLSHLLVDEFQDTSARQMELL 425

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
              L   +          R+L  VGD KQSIY +  A  +   + +R  ++        F+
Sbjct: 426  CRLLTGWSGDLG-----RSLMVVGDPKQSIYGWRQARVELFFQTRRQ-KRLPCPEAPPFT 479

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
             + L  +FRST+ ++  V+ VF                      + G+   V+  E V  
Sbjct: 480  TLTLSTNFRSTSTLIQWVNNVFGQ-----------------TIMKAGERNGVEFSEAVAK 522

Query: 317  QHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                Q +P Q +  +  D  L ++  A+ LAR+++  + N+   ++              
Sbjct: 523  PDAKQGDPPQLALFTAADRSLGRKQEANWLARQVSLKVKNIAAGES-------------- 568

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I +L+  R+  P           +  +S+   +   L D LA++ L      ++   DD+
Sbjct: 569  IGILLFTRRQLPAYLLA----CQNAGLSLRVREGLALYDSLAVQHLHNAVTALVHPHDDI 624

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
            ++  +L+          + ++   + E  +        +N   ++ +   +   E   + 
Sbjct: 625  AWAGLLQGFAGPQPLGFLAQVADYQEEFWSKKLEACAVSNDCPAEVRQWWRVCAEAGKMV 684

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN-FTLRNEQNSYSSLQELISEL 554
                 H+     L    G ++  +  G   +     +L+           ++L  L   L
Sbjct: 685  GRAPLHEILAEWLSTAGGWERIAAWEGAAGVANARVYLDLLATAASCTPEATLARLTDLL 744

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
             Q          A  + V ++TVH AKGLE   VFL     Q           +M   + 
Sbjct: 745  TQA--FQPADPRAKDSPVEVLTVHAAKGLEFDHVFLPSGDWQPLLTGKSDTPFLMEETSS 802

Query: 615  DPGIPI---WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              G  I        K ++ +   L    K+    E  RL YV +TRA   L I     T 
Sbjct: 803  AGGAVIALNCAYAGKEQSLLYHTLRDLAKQRLLSEARRLFYVAVTRAKKSLQISGVIKTD 862

Query: 672  NEKK--SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                      +    +   + + E     K            ++  +     T   +   
Sbjct: 863  KAGNCQFPANSPLGWLRQHYPDGELYPGQKSIWQPPPLPVSVFQEISELLLPTGETKTPP 922

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            +   +  + +P K+  P +   +E    +    +        +         RG IIH+L
Sbjct: 923  LPYDLQPELLPYKMQFPSQLSGSEANNDS-DQSNRFTSDEDTAGEEITLARLRGEIIHRL 981

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSITRLLENPMMTTAMSCD--- 844
            L+ +           + S                  +L  +    ++P +   +  +   
Sbjct: 982  LETLSRGVPLPEPAAVASVLRSAGVSAEYALDLADEMLAEVKACRDDPFLAPLLDANLPV 1041

Query: 845  SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV-----PQEIEHIPYT 899
              SE  V           I  GR+D++       ++ +YKT            +      
Sbjct: 1042 VRSEWLVEA---WQDSATIRRGRLDRLVFDGYQWWLLDYKTSRPPVGIDWETFLASETDA 1098

Query: 900  HIAQLSIYEKILKDSY---PNKSLVCLLIYVSEPKVFII 935
            +  QL  Y ++    +     + +  +L + +  +   +
Sbjct: 1099 YRPQLLAYRELAARFFQLASPEMIQPVLYFTANRRHIFL 1137


>gi|297588238|ref|ZP_06946881.1| ATP-dependent DNA helicase PcrA [Finegoldia magna ATCC 53516]
 gi|297573611|gb|EFH92332.1| ATP-dependent DNA helicase PcrA [Finegoldia magna ATCC 53516]
          Length = 724

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 103/577 (17%), Positives = 186/577 (32%), Gaps = 122/577 (21%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                             ++  T    L   YE   K+   LDF+DLI+ TN L ++   
Sbjct: 144 RLKNAGATEKNIDKEDFDISLSTFTMELFQKYEHKLKRYNSLDFDDLIVKTNLLFEENPD 203

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +R K  +   ++ +DE QDT+  Q+E+I++L           S    +  VGD  QS
Sbjct: 204 ---LREKYSERFKYVFVDEYQDTNDTQYELIKNLV----------SKNDNICCVGDSDQS 250

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY + GA  + +   ++  +           +I L  ++RST  IL + + V       +
Sbjct: 251 IYGWRGANIQNIQNFEKDFKN--------AKVILLEQNYRSTQPILDLANTVIKNNSLRK 302

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             +                     LW    ++++      +  ++   +           
Sbjct: 303 DKN---------------------LW---TAKNEGDMPIYRRMYSDIDE----------- 327

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A ++   I             + R    +++ +L R    + L       L     I   
Sbjct: 328 AEQVVQWIEQ----------ERYRQNPYEEMAILYRTNAQSRLFEERLNRL----GIPNR 373

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETE 464
                   D   IKD ++  R + +  D+++   ++  P     +  + K +   +    
Sbjct: 374 VVGGLKFYDRKEIKDCVSYLRIVENLNDNMALNRIINEPKRGIGKTTMDKLLQCSQSRGI 433

Query: 465 TVYEYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518
           ++ EYI+      F+N    K Q     I          +  +    IL     R     
Sbjct: 434 SMMEYIKNTDLPDFSNATAKKLQEFYYLIKSFPK--DEMNVAELMEYILDKTGYRANLEK 491

Query: 519 --SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIM 575
             +R     ++ +DE+++   +  Q++    + L   LE             N   V +M
Sbjct: 492 SNNRDDKTRLENIDEYISSLYQFVQDNPD--KNLREYLETSSLMTDLDKTDDNTKGVSMM 549

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE  VVF           +                                  
Sbjct: 550 TIHAAKGLEFDVVFFTGLEEGTIPSR---------------------------------- 575

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                    EE  RL YV +TRA  +L I    +   
Sbjct: 576 ----IDEDVEEERRLCYVAITRARKKLYITSVQSRRR 608


>gi|213692487|ref|YP_002323073.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523948|gb|ACJ52695.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458632|dbj|BAJ69253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 897

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 117/727 (16%), Positives = 221/727 (30%), Gaps = 123/727 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +     +I      L+         +  
Sbjct: 75  AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123
             L     T+     K    + I     DLK  L   ++        F        F + 
Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A YE        +DF+DLI  T +LL+       +         +IL+D
Sbjct: 189 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245

Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L                  S P  +  VGD  QSIY+F GA+ + 
Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++               I L  ++RST  IL   + V S  E  +           
Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +          +     +  +       A   A+ +A  I+ +
Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +          I   D+ ++ R    +  +         +              +  
Sbjct: 383 HAEE---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471
            IKD +A  + +++ +DD++   +L  P     +      +   R    + +  +     
Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489

Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
            +      +  +     +  L     A    P +    +L     R +       +    
Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTHAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583
           ++ L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKGL
Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL       F H                                         + 
Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +E  RL YVG+TRA  +L + + +  S   ++        + +   +    K+ +    
Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695

Query: 704 INKDEWI 710
             +  W 
Sbjct: 696 RMRANWE 702


>gi|163790443|ref|ZP_02184874.1| exonuclease RexA [Carnobacterium sp. AT7]
 gi|159874347|gb|EDP68420.1| exonuclease RexA [Carnobacterium sp. AT7]
          Length = 1267

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/626 (17%), Positives = 209/626 (33%), Gaps = 43/626 (6%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +   +     + +  +  +  ++L                            + +   
Sbjct: 302 TDEAIKETAEEMKLLRDQYKNRFKELTNDYFSASPQEQIDLMLNAAPLVEEMARVTQLFT 361

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSL 190
             Y + K +  +LDF DL   T  +L +     W+          +   +++DE QD + 
Sbjct: 362 DAYRQRKDERNLLDFNDLEHLTLQILAQFKKQDWVPTEASMHYRDKFKEVMVDEYQDINQ 421

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++R L  D        S    LF VGD KQSIYSF  A+P   L++          
Sbjct: 422 LQENILRWLAHD-------QSDQGNLFMVGDVKQSIYSFRLADPGLFLKKYEQY-----G 469

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             Q    I L  +FRS  ++L   + +F    +      D     +      G     + 
Sbjct: 470 HHQSGERIILAENFRSRGEVLQFTNLIFEQLMDKAVGQMDYDEAAQLVQGFSGFPALQKH 529

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR--RIAYTISNMIGTDTIFSNGK- 367
             +++       + +++S  +   +               +   I  +I T     + + 
Sbjct: 530 HPELLIYEKGTTDSEEDSEETESVNWDMRIEDKTEGELLMVGQKIQELIQTQFPIYDKRS 589

Query: 368 --KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              R I+ KDI++L   +K+      +   +     I +  ND         I  +M+L 
Sbjct: 590 KTTRPIRYKDIVLLTPTKKN----NLVLMEMFKRLSIPLQVNDTQNYFQTTEITIMMSLL 645

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV------------YEYIQKF 473
           + I +   D+    +L+SP+    E+++  I   +   +               E   +F
Sbjct: 646 KVIDNPYQDIPLAAVLRSPIVGLDENELASIRISQKTGDYYDALKTFYQTYPGIEKASRF 705

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEF 532
                 K   ++  +++   +A+          I               G +    L   
Sbjct: 706 TTNLYGKIDVLLTRLNKWRELARRDHLVALIWAIYDDTGFLDYVGGMNSGKQRKANLHAL 765

Query: 533 LNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
                  E+ S+  L + +  +E+            A S + + VR+MT+H +KGLE PV
Sbjct: 766 YERAASYEKTSFKGLFQFVRFIEKMQEKDKDLAEPTAISEDEDAVRVMTIHASKGLEFPV 825

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VF++D   +       K                   + +  +   + L    K     E 
Sbjct: 826 VFVLDLTKKFNLQDIKKSYVFNEQYGVGTDYKDLERRIRYPSLPETALKVEKKTKLLSEE 885

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNE 673
            R LYV +TRA ++L +         
Sbjct: 886 MRKLYVALTRAEEKLFLVGSYKNEEA 911



 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 72/205 (35%), Gaps = 17/205 (8%)

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITS 807
            D+++P   N    D+  +    + L+       G   H ++Q   + T P  +    + +
Sbjct: 1063 DVSQPRNRNRYVEDSLDRPLFMTELTVPSNAEIGTATHSVMQAVDLATKPTKESLEALIA 1122

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCP------- 858
               K   L      K  +  + +    P+    +  S + + E   S  +          
Sbjct: 1123 SLIKAGVLKEEVASKVNVGQLVQFFATPLGNMILDYSKEVHREEPFSLLLEAEKIFTDMN 1182

Query: 859  ---KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH---IPYTHIAQLSIYEKILK 912
               +  I+I G ID     + +I +F+YKT        +    +   +  Q+++Y   L+
Sbjct: 1183 GDAEDKILIHGIIDGYIELEDHIILFDYKTDRVSHYGAQAGKNMLEKYKGQMNLYRSALE 1242

Query: 913  DSYPNKSLVCLLIYVSEPKVFIIPQ 937
                 K     L  +   ++  +PQ
Sbjct: 1243 SILNKKVTEAYLCLLETGEIIPVPQ 1267


>gi|257064330|ref|YP_003144002.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM
           20476]
 gi|256791983|gb|ACV22653.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM
           20476]
          Length = 772

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/711 (13%), Positives = 207/711 (29%), Gaps = 157/711 (22%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+    +    V                 + ++   L   S        
Sbjct: 27  GAGSGKTRVLTYRIAHMVQDLNVPPWQIMAITFTNKAANEMRERLGRLVGPSARGMWVST 86

Query: 66  FSLL---------SSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F  +              ++ FT   +  T+ + K      +       +   + +  + 
Sbjct: 87  FHSMCVRILRVDCELLGFSKSFTIYDDDDTKRLLKDVMAGLDLDPKRWPVNSIRGKISQA 146

Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++      ++  ++      +   + A Y+E  K     DF+DL++ T  L K       
Sbjct: 147 KNELKAPGVYADEARDPVSKVTARVYAVYQERLKMANAFDFDDLLMYTYLLFKNHPD--- 203

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +         ++L+DE QDT+  Q+ + + L              + +  VGD+ QSIYS
Sbjct: 204 VLEAYQDRFRYLLVDEYQDTNHAQYAITKLLAA----------KHQNIMVVGDDDQSIYS 253

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++   +           I+L  ++RS+ +IL   + V +     +   
Sbjct: 254 WRGADIRNILEFEQDYPQ--------ARSIKLEQNYRSSGNILNAANAVVAHNTKRKQKR 305

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                             + ++       D   +        R 
Sbjct: 306 LF----------------------------TESGDGEKILVYMASDERDEG-------RW 330

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I  +              +  +++ V  R    +  +  +         +      
Sbjct: 331 IAGEIDKLHNEG----------VSYEEMAVFYRTNAQSRSLEDML----LRAGVPYRIVG 376

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   I+D++A     ++  DD++   ++  P     +  I  I    R+   T  
Sbjct: 377 GTKFFDRAEIRDVIAYLTLCINPADDMAAKRVINQPRRGIGKTTIEHIENVARNSNLTFM 436

Query: 468 E------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           +        +       +     +  I++    +           ++   +  Q      
Sbjct: 437 QAAEWCLADETLQMRTRNAIGGFVGLIND--AQSYGGELRKVIEAVIDRSQLIQALEQER 494

Query: 522 GNEVI---DVLDEFLNFTLRNEQNS----------------------YSSLQELISELEQ 556
            +E     + + EFL+      ++                         SL++ +  +  
Sbjct: 495 TDEAESRIENIKEFLSVVDEYVESHEIDESALPPEGINLLADTRQLSPDSLEDFLEWVRL 554

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                          V +MTVH++KGLE   VF+      +F H +  +           
Sbjct: 555 RTDLDAATDDDQ--FVTLMTVHSSKGLEFDCVFVAGMEETLFPHSNSSRDP--------- 603

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                       EE  RL YV +TRA  +L +   
Sbjct: 604 -------------------------QGLEEERRLAYVAITRARKRLYLTCA 629


>gi|116621025|ref|YP_823181.1| DNA helicase/exodeoxyribonuclease V subunit A [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224187|gb|ABJ82896.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 1045

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 163/944 (17%), Positives = 286/944 (30%), Gaps = 141/944 (14%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
           F +    + + I   L  +    +S  N      +E    T L+ A+ +  A   +   E
Sbjct: 181 FPVPPGVTVDEINDTLNAIRRESLSGWNHQQKEHLE----TALEGAERIVGA---ESPIE 233

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
               +  F        +    T             LK+ +++         T        
Sbjct: 234 ALRAIERFSCNLTKCKRGTNTT-----------NLLKRMREQIEGAEYALITALYAPQRE 282

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
             + + +  +  Y + K++   LDF DL   T  LL++   +   R ++ ++ +HIL+DE
Sbjct: 283 LLIEILRRFDRLYRDRKRQGAALDFSDLEEFTVRLLEEHHET---RARLQRQFDHILMDE 339

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+  Q ++I  +             P   +AVGD  QSI+ F  AEP+   R +   
Sbjct: 340 FQDTNGQQAKLIELI-----------RPPDRFYAVGDINQSIFGFRHAEPQGFARYRDEI 388

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                       +++L  +FRS A+IL+ V                        +   G 
Sbjct: 389 AT------GDRHLVQLVDNFRSRAEILSAV-----------------------ETLTAGA 419

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            G          + D       E   +           +I A+ +A  I  + G +    
Sbjct: 420 KGIEDRALVAGRRFDDAPEHSVEVIAAP--------ETAIEAQWVARRIMELSGPEP--- 468

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                  Q KD  VLVR  +  P  T           I  + N          + DL  L
Sbjct: 469 -------QFKDFAVLVRNTEVIPEFTDAFDA----AGIPYLVNRGRGFYASREVNDLTHL 517

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
            R I +  D++S   +L+SPL N S + + ++           +  +          Q  
Sbjct: 518 LRAIANPRDEISLAVVLRSPLVNASVEALLRLKMNGENLGAALQRSEDAL------LQRF 571

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
              +HE     ++ +        +                    +D+FL           
Sbjct: 572 GARLHEWRGRREYVTFDRLLLEAIDDCGY----------PASGNVDKFLAQARDAASR-- 619

Query: 545 SSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            SL E + EL Q      R   A      N V+IMTVH+AKGLE PVVF+      V   
Sbjct: 620 MSLDEFVMELAQVREENPREPDAPPEDSANAVKIMTVHSAKGLEFPVVFVAAIHKGV--D 677

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
             +  +                      +     L +  K+  +EE NRL YV MTRA  
Sbjct: 678 TGVPAVAFSRHYGLGARWRNPASGQDKDDLFQHALRREWKQREEEESNRLFYVAMTRAEQ 737

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS--------INKDEWIAY 712
           +LI+   +  + + ++  +   + +           KI             +        
Sbjct: 738 RLILS-FTAAARKPQNWDKLVMERLRIEPGTPGDAVKIFEAPDGKQWKARILIAQAAPEL 796

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                 P      +      + ++      + +                +  +G+    S
Sbjct: 797 LTRERTPNEEITVQFAVPPVVEEQHDSNATVTALALFAGCPRKYYLNRYLGFEGRAARRS 856

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
             +       G  +H LL                      A   P  E   L      + 
Sbjct: 857 EGAALDAGEFGTQVHALL-------------------AGTAVASPDPEAVRLAE----VF 893

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
               +          E            D +I G++D        + + +YKT      E
Sbjct: 894 RQSPLGRRAENAVRIEREF--DFLLAIADQVIVGQVDLWFEENGELLVVDYKTDTVSASE 951

Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
             H    +  QL +Y   ++           + ++       + 
Sbjct: 952 ASHRARDYGLQLRLYALAIERMTGRAPDRGFVHFLRPNVAIEVD 995


>gi|19746195|ref|NP_607331.1| DNA helicase II [Streptococcus pyogenes MGAS8232]
 gi|19748377|gb|AAL97830.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS8232]
          Length = 772

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 115/650 (17%), Positives = 205/650 (31%), Gaps = 123/650 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  LDF+DLI+ T  L    D +  +     Q   +I +DE QD
Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TISNM          +
Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +     KD  VL R    +  I            I               I+DL+A    
Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481
           + +  D++SF  ++  P        + K+        +++ E                  
Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   + +L       S  D    +L           +   E    I+ ++EFL+ T  
Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516

Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +++             L   +++L     T      A+   V +MT+H AKGLE PVVF
Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEASE--VTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                              EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   KS+       + +        K +      +    
Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            + E  T   +   L      ++   + +   +              + P
Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLP 710


>gi|260102795|ref|ZP_05753032.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM
           20075]
 gi|260083399|gb|EEW67519.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM
           20075]
          Length = 748

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/692 (17%), Positives = 215/692 (31%), Gaps = 135/692 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   QV+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMREREQKLLGPAAQNIWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106
           F  L    L +            I   +  L                   +  L    + 
Sbjct: 90  FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILSAISNG 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D         ++     +A  +   Y+   +++ ++DF+DLI+ T  L KK   +
Sbjct: 150 KNDLLD--PKAFAASASSPFDKMAAKIYEEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
               +    +  +IL+DE QDT+  Q+E+  +L   +          + +  VGD  QSI
Sbjct: 208 ---LHYYQNKFRYILVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + ++  +   +K           ++L  ++RST  IL+  + V    +N + 
Sbjct: 255 YGWRGANMENIMNFESDYKKD------GVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW         Q    + ++        +       A
Sbjct: 309 KN---------------------LW-------TDQGEGAKVTYYQAQSGDDE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I   I   +           +    KD  +L R    +  +            I    
Sbjct: 334 HYIISKIKEEVEA---------KKRTYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET- 465
                  D   IKD+MA  + + +  D +S   ++  P        + K+     E    
Sbjct: 381 VGGHKFYDRKEIKDIMAYLKLVANPADTMSMNRIINVPKRGIGAATVDKLLAFADENHYN 440

Query: 466 -----VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                 +            K       + + I  AQ          IL   +      + 
Sbjct: 441 ALDAMDHVAESPINTRTAKKLSDFGTKLRDAIAYAQTHGVTGLTEKILSDFEYTDALRAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYSSLQE---LISELEQ-YPPTIKRAHSANHNEVR 573
              E     + LDEFL+ T R + +      E   L   L +    + +     + N+V 
Sbjct: 501 NTIEAETRLENLDEFLSVTKRFDDHYEPDEDESNPLSDFLAEVSLLSDQDDLDEDDNQVA 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F  +                                
Sbjct: 561 LMTLHAAKGLEFPVVFLVGMEDGLFPLQ-------------------------------- 588

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                +  +  EE  RL YVG+TRA  +L + 
Sbjct: 589 --RAMMDDNELEEERRLAYVGITRAKKELYLT 618


>gi|313900250|ref|ZP_07833746.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2]
 gi|312954959|gb|EFR36631.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2]
          Length = 1069

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 150/895 (16%), Positives = 300/895 (33%), Gaps = 89/895 (9%)

Query: 47   LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
            L   Q L QA Q Q  +   +   +        P  +   +E  +    L        + 
Sbjct: 259  LLALQDLHQALQNQDYQAYRAAFLAIVHAVVP-PSPDKEDKEYARLRKSLLALEDAQLEI 317

Query: 107  FIKIRDRFNTYK-MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                 +     + ++      + + +   + Y   K+K+ V+DF+D+     ++L+ +  
Sbjct: 318  LFSEDEFMRDIRYLYPYIKKLVDMCRDYRSAYARIKEKHKVIDFDDMEHFALEILQAKGG 377

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +     ++   I++DE QD++ +Q +++  +                +F VGD KQS
Sbjct: 378  R--VADIYREKFVEIMVDEFQDSNDVQNQLVMLIC-----------RKNNVFRVGDIKQS 424

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  A+P  +              G    +I L  ++RS   I+   + +F +  N  
Sbjct: 425  IYGFRHAKPSLMKGLIDH-------RGVFDEVIYLSNNYRSKKMIVDFNNDLFKLLMNID 477

Query: 286  GLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
            G S          +         V +    V  ++ +                  S   +
Sbjct: 478  GFSCSYAKEDDVETGVPAQNEDNVPICFHAVYHNEIKEAEGIIV-----------SKNEL 526

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A  IA  I  +   +           + KD +VLVR       +  +   L     I  
Sbjct: 527  KASYIANQILEIKEREQR---------KWKDFVVLVRGNARKDDMKKIFDEL----NIPY 573

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              + ++      A++ +++  + IL   DD+SF   + SPLF  S  D  +   Q+ + +
Sbjct: 574  FIDIKYGFYQSNAVQVILSAMKCILHPHDDISFTATMLSPLFRKSTMDFAQAKLQKEKGQ 633

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            + Y +  +    G        + + ELI         +    +   +   +        +
Sbjct: 634  SYYSWFCEHPFPG-------FEILQELIFQHGRLRISELINKLYEMQDYYR---LHTSIQ 683

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS---ANHNEVRIMTVHTAK 581
                LD      ++ E    S L   +S++EQ             A  + VR+M++H +K
Sbjct: 684  EKTNLDLLFEKAVQFEDQYASGLSSFLSQIEQIKDAQTAEAIPIGAEADVVRVMSIHQSK 743

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ PVVFL  T  Q    +          L           +          +     K
Sbjct: 744  GLQFPVVFLWSTDKQT-PIEFKDFCISDSELGLAMKAMDLPQRYVRTTIPRIAMEHKKDK 802

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
               EE  R+LYV  TRA  Q+ I       +  K           + + +      +   
Sbjct: 803  EELEEEMRILYVATTRAQTQMHIVDCILELDTYKHPLSMSQVYNRNGYTSWILQTFLCNP 862

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
            + +   + +   W             E  +         +    P K+       L  ++
Sbjct: 863  SPLFTVKEVHRLW-----------HSEVQQAEAGIYHPFRVYEKPSKSIE-----LVTAS 906

Query: 762  IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                 +    +   D Q  + G ++HK+++ +        ++ I     +        + 
Sbjct: 907  AQEARELPAFTFDDDMQGSDYGTMMHKMIEAL--QAPIWSRDVILQVANQQLVELKEWD- 963

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
               + ++ +L ++P    A   D + E+    K        I+ G +D +SI    + I 
Sbjct: 964  ---IQTLLQLGKDPDYLLAYRGDVHHEMPFMVK----DGLQILHGYMDFVSIQNDRMIIL 1016

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            ++KT              +  QL++Y+K +   YP  S+   +  +   ++  I 
Sbjct: 1017 DFKTDSLKED--AEFIQRYKGQLAMYKKAMHILYPKHSITTCIYSLHLHRMIAIS 1069


>gi|254373504|ref|ZP_04988991.1| hypothetical protein FTCG_01457 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571229|gb|EDN36883.1| hypothetical protein FTCG_01457 [Francisella novicida GA99-3549]
          Length = 740

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 125/758 (16%), Positives = 233/758 (30%), Gaps = 146/758 (19%)

Query: 5   FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43
            GL+  +    + +D                  ++   L  + G                
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89
             I ++ + +   S        F  ++   L +                  Q  ++ + I
Sbjct: 68  KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           N    D K+   K    FI  + +    +  K T        ++   YEE  + +  LDF
Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            DL+++  +L         +R     +  +ILIDE QDT+ +Q+  ++ L  D       
Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 + AVGD+ QSIY + GA    +    +  +           II+L  ++RST +
Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL V + V    +N                         +LW        +  + ++   
Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVEL 317

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               +   +       A+ I   I  +              +   DI +L R    + ++
Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                       I       F   D   IKD +A  R  ++  D+L+F  ++ +P     
Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416

Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502
              +  I    +  + + ++                S     I+ I+ +       S   
Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELINGISAQISQHSLDK 476

Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553
               ++        +         + ID L E ++     E       ++   LQ+ +S 
Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                           + V++MT+H +KGLE   VFLV     VF    I          
Sbjct: 537 AVLEAGD--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            +  +      +    E  RL YV +TRA   L I      +  
Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRNIF 632

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            +S+ +     V +         K++   +  K +  A
Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFAAAKPKTKQKA 670


>gi|325956252|ref|YP_004286862.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC]
 gi|325332817|gb|ADZ06725.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC]
 gi|327183068|gb|AEA31515.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1118]
          Length = 748

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 123/773 (15%), Positives = 242/773 (31%), Gaps = 138/773 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   QV+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAATEMREREQKLLGPAAENIWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKS------PDLKEKL---------KKSQDEFIKI 110
           F  L    L +            I   +        +++ L         +         
Sbjct: 90  FHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGVLAAISNG 149

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++     + F++T       +A  +   Y+   +++ ++DF+DLI+ T  L KK   +  
Sbjct: 150 KNDLLDPEAFETTASSPFEKMAAKIYKEYQRRLRRDQIMDFDDLIMQTLVLFKKDPET-- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
             +    +  +IL+DE QDT+  Q+++  +L   +          + +  VGD  QSIY 
Sbjct: 208 -LHYYQNKFRYILVDEYQDTNEAQYQLCHALAAQY----------KNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + ++  +   QK           ++L  ++RST  IL+  + V    +N +  +
Sbjct: 257 WRGANMENIMNFEHDYQKD------GVRTVKLEQNYRSTGHILSAANSVIKNNQNRKDKN 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         Q   Q+ ++        +       A  
Sbjct: 311 ---------------------LW-------TDQGEGQKVTYYQAQSGDDE-------AHY 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +                K+  +L R    +  +            I      
Sbjct: 336 IISKIQEEVKDKHR---------SYKNFAILYRTNAQSRTVEEAF----VKSNIPYQIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-- 466
                D   IKD+MA  + + +  D +S   ++ +P        + K+ T   +      
Sbjct: 383 GHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLLTFADDNHYTVL 442

Query: 467 ----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
               +      +     K       + + I  AQ  S       IL          +   
Sbjct: 443 DAMDHVAESPISTRAAKKLSDFGAKLRDAIAYAQTSSVTGLTEKILEDFDYTDALKAENT 502

Query: 523 NE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E    ++ LDEFL+ T R       E++  + L + ++E+               N+V 
Sbjct: 503 IESETRLENLDEFLSVTKRFDDHYEPEEDDSNPLSDFLAEVSLLSDQDDLDED--DNQVA 560

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFL+     +F  +                                
Sbjct: 561 LMTLHAAKGLEFPVVFLIGMEDGLFPLQ-------------------------------- 588

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFH 690
                +  +  EE  RL YVG+TRA  +L +    +       + +    + D +     
Sbjct: 589 --RSMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDSKDL 646

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
           + E  +K++ +   +     +  ++                      +     
Sbjct: 647 HKEENEKLEGSFIKSSFAATSAPFARKAERARATVYTAKKASGAVGAEKKGWS 699


>gi|322372977|ref|ZP_08047513.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150]
 gi|321278019|gb|EFX55088.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150]
          Length = 775

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 107/645 (16%), Positives = 204/645 (31%), Gaps = 123/645 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  +DF+DLI+ T  L  K      +     Q   +I +DE QD
Sbjct: 172 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 229 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +                      
Sbjct: 277 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 311

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI+N++  +       
Sbjct: 312 --LW-------TQNDDGEQIVYYRANDERDE-------AVFVASTINNVVREEGK----- 350

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 351 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 403 IANPADNISFERVVNEPKRGVGPGTLEKIRTFAYEQDMSLLDASANIMLSPIKGKAAQGV 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I  L       S  +    +L           +   E    I+ ++EF++ T  
Sbjct: 463 YDFANVILNLRDQLDDLSITEVVEAVLDQSGYLDALSMQQTLESQARIENIEEFMSVTKN 522

Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            ++ +            L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 523 FDETNTDETEDETGIDRLGRFLNDLALIADTDDGDVEAAE--VTLMTLHAAKGLEFPVVF 580

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF      +                                           R
Sbjct: 581 LIGMEEGVFPLSRASEEPDELEEE----------------------------------RR 606

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   K+N       + +   +  + + +    + +    
Sbjct: 607 LAYVGITRAEEILFLTNANTRTLFGKTNYNRPSRFLREISDDLLQYQGLARPANSSFGVR 666

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
              +  T   +   L++    ++   + +         K     P
Sbjct: 667 FTKDEPTQFGQGMSLQQALQTRKANAQPQRRTGAQPFSKATGGLP 711


>gi|325687804|gb|EGD29824.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK72]
          Length = 762

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/590 (16%), Positives = 193/590 (32%), Gaps = 119/590 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 168 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 224

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 225 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 273 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 307

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI+ +           
Sbjct: 308 --LW-------TQNEDGEEIVYYRAKDEKDE-------ALFVARTIAQLSREG------- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            +               I+D+++    
Sbjct: 345 ---YSYKDFAVLYRTSAQSRTVEEAL----LKGNMPYTMVGSTQFYSRKEIRDVISYLNL 397

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 398 IANPSDNISYERVVNEPKRGVGPGTVDKIRDFASSQEISLLDASANILLSPVKGKAAQAV 457

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +  +    +L          ++   E    I+ ++EFL+ T  
Sbjct: 458 YDFANMLLDLRERLDDYTVTELVEAVLEKTGYATALAAQATLESQARIENIEEFLSVTKN 517

Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            +++       S L +L   L +            + +EV +MT+H AKGLE PVVF++ 
Sbjct: 518 FDESSDNPADESGLDKLSRFLNDLALIADTDDVDQDSSEVTLMTLHAAKGLEFPVVFIIG 577

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F  K                                      K+   EE  RL Y
Sbjct: 578 MEENIFPFKWG----------------------------------ESKEKDLEEERRLAY 603

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           VG+TRA   L +   ++     K+N       + +        + +    
Sbjct: 604 VGITRAEKILYLTNANSRMLYGKTNCNQPTCFLREISSALLDYQGLARPE 653


>gi|15675225|ref|NP_269399.1| DNA helicase II [Streptococcus pyogenes M1 GAS]
 gi|21910437|ref|NP_664705.1| DNA helicase II [Streptococcus pyogenes MGAS315]
 gi|28896013|ref|NP_802363.1| DNA helicase II [Streptococcus pyogenes SSI-1]
 gi|71910790|ref|YP_282340.1| DNA helicase II [Streptococcus pyogenes MGAS5005]
 gi|94988710|ref|YP_596811.1| DNA helicase II [Streptococcus pyogenes MGAS9429]
 gi|94992533|ref|YP_600632.1| DNA helicase II [Streptococcus pyogenes MGAS2096]
 gi|13622394|gb|AAK34120.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS]
 gi|21904635|gb|AAM79508.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes
           MGAS315]
 gi|28811263|dbj|BAC64196.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1]
 gi|71853572|gb|AAZ51595.1| DNA helicase II [Streptococcus pyogenes MGAS5005]
 gi|94542218|gb|ABF32267.1| DNA helicase II [Streptococcus pyogenes MGAS9429]
 gi|94546041|gb|ABF36088.1| DNA helicase II [Streptococcus pyogenes MGAS2096]
          Length = 772

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/650 (17%), Positives = 204/650 (31%), Gaps = 123/650 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  LDF+DLI+ T  L    D +  +     Q   +I +DE QD
Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++I+ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLIKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TISNM          +
Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +     KD  VL R    +  I            I               I+DL+A    
Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481
           + +  D++SF  ++  P        + K+        +++ E                  
Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   + +L       S  D    +L           +   E    I+ ++EFL+ T  
Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516

Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +++             L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                              EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   KS+       + +        K +      +    
Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            + E  T   +   L      ++   + +   +              + P
Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLP 710


>gi|251782494|ref|YP_002996796.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391123|dbj|BAH81582.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|323127381|gb|ADX24678.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 772

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/679 (17%), Positives = 211/679 (31%), Gaps = 134/679 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  LDF+DLI+ T  L         +     Q   +I +DE QD
Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDSNPD---VLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TISNM          +
Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------AQ 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +     KD  VL R    +  I            I               I+DL+A    
Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMIGGTKFYSRKEIRDLIAYLTI 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481
           + +  D++SF  ++  P        + K+        +++ E                  
Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESNQSLLEAASNLFMSPLKGKAAQAM 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   +++L    +  S  D    +L           +   E    I+ ++EFL+ T  
Sbjct: 457 TDLAGILNQLRQDLETMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516

Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +++             L   +++L     T          EV +MT+H AKGLE PVVF
Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTD--DSQTEAAEVTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                              EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   KS+       + +        + +      +    
Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLNEISEELLSYQGLARPAQSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
            + +  T   +   L      ++   +          ++           S+  T     
Sbjct: 661 FSTDKHTQFGQGMSLSEALQARKAQAQ----------VRQSPQPTQARTISSASTTSGLP 710

Query: 770 LESLLSDNQTF-NRGLIIH 787
             S  S  +     G I H
Sbjct: 711 FGSNRSLEEVTWQIGDIAH 729


>gi|227889452|ref|ZP_04007257.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC
           33200]
 gi|227849930|gb|EEJ60016.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC
           33200]
          Length = 772

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 125/692 (18%), Positives = 214/692 (30%), Gaps = 135/692 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 54  GAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPAADSVWMST 113

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---------------EFIKI 110
           F  L    L +            I   +  L    +  +D                    
Sbjct: 114 FHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPKAILGAISNG 173

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T K FK   AS+   +   + + Y+   K++ ++DF+DLI+ T  L KK      
Sbjct: 174 KNDLLTPKDFKDQAASMFEKVTAQVYSEYQHRLKRDKIMDFDDLIMQTLVLFKKD---KE 230

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
             +    +  +IL+DE QDT+  Q+++  +L   +          + +  VGD  QSIY 
Sbjct: 231 TLHYYQNKFRYILVDEYQDTNEAQYQLCVALAAQY----------KNICVVGDADQSIYG 280

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   Q        + + I+L  ++RST  IL   + V       +   
Sbjct: 281 WRGANMENILNFEHDYQDD------EVTTIKLEQNYRSTGHILDAANSVIKNNLKRKPKK 334

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         +    + ++        +       A  
Sbjct: 335 ---------------------LW-------TDKGAGDKINYYRAQSGNDE-------ALF 359

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   I                KD  VL R    +  +            I      
Sbjct: 360 IISKIKEEIEEHQR---------DYKDFAVLYRTNAQSRNVEEAL----VKANIPYRIVG 406

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   IKD++A  + + +  D +SF  ++  P        + K     ++ +   E
Sbjct: 407 GHKFYDRKEIKDILAYLKVVANPADSMSFNRIINVPKRGLGPTTMAKFNGFANDNDFTVE 466

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              K                     + + I  ++          IL     ++   +   
Sbjct: 467 ETFKNLSLAPITGRPARTLATFGTALKDAIEYSKTHGVTGLTEKILADFGYKEALENEHT 526

Query: 523 NEVI---DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            E     + L+EFL  T R       E    ++L + +SE+               N+V 
Sbjct: 527 IEADTRLENLNEFLTVTKRFDDNYEPEDEDSTALGDFLSEISLLSDQD--DLENQDNQVA 584

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 585 LMTLHAAKGLEFPVVFLVGMEEGLFPLS-------------------------------- 612

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                   S  EE  RL YVG+TRA  +L I 
Sbjct: 613 --RAAEDPSELEEERRLAYVGITRAEKKLYIT 642


>gi|302874683|ref|YP_003843316.1| recombination helicase AddA [Clostridium cellulovorans 743B]
 gi|307690704|ref|ZP_07633150.1| recombination helicase AddA [Clostridium cellulovorans 743B]
 gi|302577540|gb|ADL51552.1| recombination helicase AddA [Clostridium cellulovorans 743B]
          Length = 1287

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 142/796 (17%), Positives = 288/796 (36%), Gaps = 67/796 (8%)

Query: 87   QEINKKSPDLKEKLKK--SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            + +  +  +    + +    D+   I + F    +         +   +   ++E K+  
Sbjct: 311  KNVRDQYKETISSIIEDFFYDDIEAINEEFRF--IAPIISILKEILISVIHTFKEKKRSK 368

Query: 145  CVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             ++DF D+     +LL     K   V   +  +I ++   I+IDE QD+S IQ E++ ++
Sbjct: 369  GIIDFNDMEHYVLELLCTKNDKDETVPTEVALEIRRKFEEIMIDEYQDSSFIQEEIMTTI 428

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
            +               +F VGD KQSIY F  A+P+  L +    ++     G +   I 
Sbjct: 429  SRKDEAV-------PNMFMVGDVKQSIYKFRQAKPELFLEKYETYEEL---DGARNRKIL 478

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR------SSRIGQVGTVQLWEQ 313
            L  +FRS  +IL   + +F    + +    + T            +     +   +  + 
Sbjct: 479  LYKNFRSRKEILDGTNFIFKSIMSKELGELEYTDKEALNLGADYVTFEDESLTFAEPIDV 538

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD------TIFSNGK 367
            ++ +  S     Q+      + L + +   + A+ I   I  ++G +       +F  G 
Sbjct: 539  IIFEKPSGNIEIQKDTDEDAEDLEEINEFQMEAKIIGAEIKKIMGREAGYRRKKVFDKGS 598

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++ KDI++L+R    T   T +      + +I V  +      D++ +K ++AL + 
Sbjct: 599  YRDVEYKDIVILLRS---TVNRTDVFLEELKNLEIPVYADSTSGFFDNIEVKTILALLQV 655

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN------CGISKF 481
            I + + D+  + +L+SP+  FS+D++  I     +    +                  K 
Sbjct: 656  IDNPKQDIPLLAVLRSPIGGFSDDELIDIKISMDKEYCYFFDKLSNYCVVGSDNDLREKT 715

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540
            +  ++ +++    +   S  +    +               G +    L    +   + E
Sbjct: 716  KAFLRRLNDYRSKSLHLSLVELIWFLFTDTGYLAFVGTLPNGMQRQGNLRILFHRAKQYE 775

Query: 541  QNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
              SY  L   I+ +E            +    N N VRIMT+H +KGLE PVVFL  T  
Sbjct: 776  ATSYRGLFNFINFMEKMKNTSSDLGDAKLLGENDNVVRIMTIHKSKGLEFPVVFLASTSK 835

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +  + +   +     +         +  +    + + + + + +K     E  R+LYV +
Sbjct: 836  RFNNRELNNEFLFHHNFGIGIKYTDFEKRISYSSILRNLIQEKMKIENYSEEMRVLYVAL 895

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA ++LII        +         +    +  + E      L      D+  +    
Sbjct: 896  TRAKEKLIITGGVKEIEKSIRKWALSCE----TQQHQENFFINSLEQCEEDDKVNSNSLI 951

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL---------NPSTIDTKG 766
                E    +          +  +   +     N+I E Y +         +PS  + K 
Sbjct: 952  ESSLEEKISKDIIIKANSYLDWIVFALMRHKSTNEIRELYNIHCSPLVLTNSPSKWNIKL 1011

Query: 767  KTNLESLLSDNQTF------NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
              + + L             +R  +  K+++ I      + K  I    +   K   A E
Sbjct: 1012 LNSEDILAFKKNGALDDQMDSREQLFQKIIEEISEKDTDQYKAEIQRRLSFKYKYSVATE 1071

Query: 821  YKNLL--LSITRLLEN 834
              +LL    I R   +
Sbjct: 1072 IPSLLSVTEIKRRFND 1087



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 18/188 (9%)

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEY 821
                          +  RG I+H ++Q +     L        I+    +       KE 
Sbjct: 1101 LKTPRFLEEEKALTSAERGTIVHLVMQHLDLNRALTMESINEQISEMIKRE--FINEKEA 1158

Query: 822  KNL-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKI-----------NCPKKDIIISGRI 868
            K + +  I R   + +    +  D  Y E     ++           +   +DII+ G I
Sbjct: 1159 KVVDIRKILRFFSSTIGLRMLRADKIYREYPFKIRVKSNEILKLSKSDDENEDIIVQGVI 1218

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            D I +    I I +YK  +     ++ I   +  QL+ Y+   +     +     L    
Sbjct: 1219 DTIFVENDEIVIIDYKNDYVNDNIVDTIKTQYKTQLNYYKIAAEKILNKRVKNIYLYLFY 1278

Query: 929  EPKVFIIP 936
              +V    
Sbjct: 1279 SGEVLEYD 1286


>gi|291547104|emb|CBL20212.1| Superfamily I DNA and RNA helicases [Ruminococcus sp. SR1/5]
          Length = 760

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 117/739 (15%), Positives = 223/739 (30%), Gaps = 135/739 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   +            
Sbjct: 47  GAGSGKTRVLTHRIAYLMEEKGVNPWNILAITFTNKAASEMRERVNKIAGMGAESVWVST 106

Query: 66  FS---------LLSSFFLTQKFTPQKNIITQEINKKSP---DLKEKLKKSQ---DEFIKI 110
           F           +        FT       + + K+     D+  K+ K +    E    
Sbjct: 107 FHSACVRILRRHIEVLGFGSNFTIYDADDQKTVMKEIFRKFDINTKIYKERGVLAEISHA 166

Query: 111 RDRFNTYKMFKSTL---ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           +D   T +  +              +   Y+   + N  LDF+DLI+ T +L +      
Sbjct: 167 KDELITPEEMELNAGGDPDARKIAGMYKEYQSILRGNNALDFDDLIVKTVELFQHNPD-- 224

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I     +   +I++DE QDT+  Q++ +  L E +          + L  VGD+ QSIY
Sbjct: 225 -ILDYYQERFKYIMVDEYQDTNTAQFKFVSLLAEKY----------KNLCVVGDDDQSIY 273

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA    +L  +++          +  ++ L  ++RST +IL   ++V       +  
Sbjct: 274 RFRGANIGNILGFEKVFP--------EAKVVRLEQNYRSTQNILNAANEVIVNNTERKEK 325

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW              +  +  + +   +       A 
Sbjct: 326 R---------------------LW-------TENEEGDKVHFRQFNNGFEE-------AE 350

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I                  Q KD  VL R    + L             +     
Sbjct: 351 YVAGEIIQGRRNG---------KFQYKDCAVLYRTNAQSRLFEEKF----LLANVPYKIV 397

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     IKDL++  + I +  DDL+   +L  P        I ++         + 
Sbjct: 398 GGVNFYARKEIKDLLSYLKTIDNASDDLAVRRILNVPKRGIGLTSIGRVQDYADMMNLSF 457

Query: 467 YEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           Y+ ++             K    + +I  L   A+  +  +    ++      ++  +  
Sbjct: 458 YDALRVVEEVPSIGRAAGKINDFVSFIQGLKSKAEAYTVRETLEEVIELTGYVKELEAEK 517

Query: 522 GNEVI---DVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             E     + +DE ++ T        E    ++L   + E+             + + V 
Sbjct: 518 TEEAQARIENIDELISKTESFQEAMEEAGQPATLSAFLEEIALVADIDSVDP--DQDYVL 575

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE P VF+V     VF                                   
Sbjct: 576 LMTLHSAKGLEFPNVFIVGMEDGVFPGYASIWSGDP------------------------ 611

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   S  EE  RL YVG+TRA  +L +          ++        V +      
Sbjct: 612 --------SDIEEERRLCYVGITRAMKELTLTCAKQRMIRGETQYNRVSRFVREVPRELV 663

Query: 694 RVKKIKLTNSINKDEWIAY 712
            +           D+ ++ 
Sbjct: 664 DLGHTIQEKKPRVDDIVSP 682


>gi|319899138|ref|YP_004159231.1| DNA helicase II [Bartonella clarridgeiae 73]
 gi|319403102|emb|CBI76660.1| DNA helicase II [Bartonella clarridgeiae 73]
          Length = 817

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 108/550 (19%), Positives = 185/550 (33%), Gaps = 109/550 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + L   Y++  K     DF DL+++   + +       I  +   +  +IL+DE QDT
Sbjct: 209 MGRQLYRSYQDRLKSLNACDFGDLLLHPIFIFQHNPD---ILREYHDKFRYILVDEYQDT 265

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+  +R L +        H     L  VGD+ QSIY + GA+   +LR ++      
Sbjct: 266 NTAQYLWLRLLAQ-------RHEKQVNLCCVGDDDQSIYGWRGAKVDNILRFEKDF---- 314

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   II L  ++RST+ IL     + S  ++  G +  S  T              
Sbjct: 315 ----SPAKIIRLERNYRSTSHILKTAAHLISHNQDRLGKTLFSDQT-------------- 356

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                         +  +    + +DS  +       AR I   I        + ++   
Sbjct: 357 ------------NSDDAKVKIHAAWDSEEE-------ARAIGKEIEQAQQNGHLLNH--- 394

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  I +LVR              L     ++          + + I+D +A  R +
Sbjct: 395 -------IAILVRASFQMREFEDRFVTL----GLNYRIIGGPRFYERMEIRDALAYLRVV 443

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISKF 481
           +   DDL+F  ++ +P        +  +  + R  +  ++          +      +  
Sbjct: 444 VQPADDLAFERIINTPKRGLGNTTLRHLYDSARARSIPLFVAATELIATDELKPKIRNAL 503

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           ++V++       + Q     +    IL A      +      E    L+         EQ
Sbjct: 504 RNVVENFRHWQGMLQHTPHTELAETILDASGYTTMWQEDRSPEAPTRLENLKEMIRSMEQ 563

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 + L S LE     +    + N + V IMT+H+AKGLE   VFL      +F H+
Sbjct: 564 -----FENLPSFLEHVSLVMDSESNENTDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 618

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +S  EE  RL YVG+TRA   
Sbjct: 619 RSLD--------------------------------EGGRSGLEEERRLAYVGLTRAKKY 646

Query: 662 LIICKHSNTS 671
           L I   SN  
Sbjct: 647 LHIWCVSNRR 656


>gi|119475989|ref|ZP_01616341.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143]
 gi|119450616|gb|EAW31850.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143]
          Length = 1153

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 164/986 (16%), Positives = 325/986 (32%), Gaps = 113/986 (11%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGN-----------PTILKKAQTLQQASQTQ 60
            + + I +D+    +  +S +   +   ++               + L     L  +    
Sbjct: 219  TLKRIIEDVLDSLHQSLSGLAAELLPLLDYAGCNLRWQNSESVASCLAGIVELPGSESVS 278

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQE-----INKKSPDLKEKLKKSQDEF-------I 108
                 +  ++   LT K   +K +  +             L + LK +            
Sbjct: 279  NNVSEWKAIAELLLTGKGEWRKTVNVKSGFPTETQDGDKALAKSLKTNFTALLQDLRSND 338

Query: 109  KIRDRFNTYK----------MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            ++R++ N  +           ++   +   +   L A      ++   +DF    +   D
Sbjct: 339  ELREKLNELRNLPQGHFDRSQWQLLESLTRILPALVAQLMTEFQQRGEVDFSQFSMAALD 398

Query: 159  LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-FVGKNTHSSPRTLF 217
             L        +  K+D ++ HIL+DE QDTS  Q+ +++SL E +    +N  ++PRT+F
Sbjct: 399  ALGDGLNPTELALKLDHQLRHILVDEFQDTSSSQFRLLQSLLEGWQEANRNDPNNPRTVF 458

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGD  QSIY F  A     L  +R         G       L  +FRS   I+  +++ 
Sbjct: 459  IVGDGMQSIYGFREANVGLFLEARR-----LGVNGVTLVDCPLHTNFRSDPTIVEWINET 513

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            FS                          G V     +        +  +    +  D+  
Sbjct: 514  FSYAFPQVENRSR---------------GAVPHETAIAFNPIDSSSEVKLFGFTGDDAQL 558

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
             E          A     +I    +             I +LVR R     I        
Sbjct: 559  AE----------AGKTVALIEAAQLVDPE-------GSIAILVRSRGHLKAIIPAL---- 597

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            +   +     D   L  +  I DL++L + + +  D +S+V +L++P    + +D+F++ 
Sbjct: 598  SRAGLQWNATDIDPLLSYGTINDLLSLTKAMYNLADKVSWVALLRTPWVGLNNNDLFRLL 657

Query: 458  TQRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
            +                    ++ G  +   V   +          +P  +   I  A  
Sbjct: 658  SVDKAQSVWSAIGNDEILAGLSSHGKERLGAVRLILQSAYGDRLRQTPRSWIEGIWQALG 717

Query: 513  GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
            G     +  G      + +FLN   R  Q     LQ L    +        +  ++ N +
Sbjct: 718  G----AATHGASESQFVGDFLNLLERFHQGEL--LQSLALFEQAVGGLYASSLPSDSN-I 770

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI----WIPQSKSR 628
             +MT+H +KGLE   V L   G    S      M      +D     +            
Sbjct: 771  SLMTIHKSKGLEFDTVILPGLGRAPRSDDKSLLMWQEYLSDDGLESGLVISPQAAAGSEE 830

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-KKSNQRTWYDMVYD 687
            ++I + L      S++ E  RL YV  TRA  +L I   S+   +  K+   +   ++  
Sbjct: 831  DSIYTYLRSEQAASSRLENTRLFYVAATRAVKRLYISITSSMDEKSGKAKPPSKNSLLGA 890

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
            ++   E   +       N            + E++     ++ ++L    ++P   F   
Sbjct: 891  AWPVLEDAVQWTDNALGNAVVDKVPAQFGMNFEHS--NPGDSFERLSVAWRVPAWSFPNP 948

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP--------EH 799
                       P   +     N+  L  D      G+I H + +V+              
Sbjct: 949  LKTFYLNEAF-PVAGNDASLLNIPDLSIDPLPTCVGVICHGIFEVLAKQGIGHWQQMNAD 1007

Query: 800  KRKNFITSYCTKNAKLWPAKEYK--NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
            KR  ++ S    +     +       ++ ++   + +      +S D  S      ++  
Sbjct: 1008 KRIVWLDSLLRHHRLPASSWVLAKQQIVKAVENTVSDDRGRWILSRDKQSSH-TELQLMS 1066

Query: 858  PKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQE-----IEHIPYTHIAQLSIYEKIL 911
               + + +  +D+I   ++  I+I +YKT      E     IE     ++ QL+ Y+ +L
Sbjct: 1067 VSANTVRNNILDRILTDEEGNIWIIDYKTSTPGDTETLQQFIEKEEAIYMPQLAAYKGLL 1126

Query: 912  -KDSYPNKSLVCLLIYVSEPKVFIIP 936
                  ++ +   L +   P    + 
Sbjct: 1127 SAKLGGSQPIRTALYFTHYPHWHEVS 1152


>gi|208780175|ref|ZP_03247517.1| DNA helicase II [Francisella novicida FTG]
 gi|208743824|gb|EDZ90126.1| DNA helicase II [Francisella novicida FTG]
          Length = 740

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 126/758 (16%), Positives = 234/758 (30%), Gaps = 146/758 (19%)

Query: 5   FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43
            GL+  +    + +D                  ++   L  + G                
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89
             I ++ + +   S        F  ++   L +                  Q  ++ + I
Sbjct: 68  KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           N    D K+   K    FI  + +    +  K T        ++   YEE  + +  LDF
Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            DL+++  +L         +R     +  +ILIDE QDT+ +Q+  ++ L  D       
Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 + AVGD+ QSIY + GA    +    +  +           II+L  ++RST +
Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL V + V    +N                         +LW        +  + ++   
Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVEL 317

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               +   +       A+ I   I  +              +   DI +L R    + ++
Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                       I       F   D   IKD +A  R  ++  D+L+F  ++ +P     
Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416

Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502
              +  I    +  + + ++                S     I+ I+ +       S   
Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKELVTKRTASLLLKFIELINGISAQISQHSLDK 476

Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553
               ++        +         + ID L E ++     E       ++   LQ+ +S 
Sbjct: 477 LLESVINQSGLLASYQEKNSEKDRQKIDNLKELISAAKDFEPQIELLDDNTDILQDFLSF 536

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                           + V++MT+H +KGLE   VFLV     VF    I          
Sbjct: 537 AVLEAGD--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            +  +      +    E  RL YV +TRA   L I      +  
Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRNIF 632

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            +S+ +     V +         K++ T +  K +  A
Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFTVAKPKTKQKA 670


>gi|254374966|ref|ZP_04990446.1| DNA helicase II [Francisella novicida GA99-3548]
 gi|151572684|gb|EDN38338.1| DNA helicase II [Francisella novicida GA99-3548]
          Length = 740

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 125/758 (16%), Positives = 232/758 (30%), Gaps = 146/758 (19%)

Query: 5   FGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETG---------------N 43
            GL+  +    + +D                  ++   L  + G                
Sbjct: 8   LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ--------------KFTPQKNIITQEI 89
             I ++ + +   S        F  ++   L +                  Q  ++ + I
Sbjct: 68  KEIQQRVEKMLGISTFGMWIGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLVKKVI 127

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           N    D K+   K    FI  + +    +  K T        ++   YEE  + +  LDF
Sbjct: 128 NNLDLDDKKYPPKLLQNFIN-KQKDKAIRSNKLTKQYDANYAHIYTAYEERLQLDNALDF 186

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            DL+++  +L         +R     +  +ILIDE QDT+ +Q+  ++ L  D       
Sbjct: 187 ADLLLHLYELFSFN---QQLREYYQNKFKYILIDEFQDTNHVQYMWLKLLITD------- 236

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 + AVGD+ QSIY + GA    +    +  +           II+L  ++RST +
Sbjct: 237 ---NNYMMAVGDDDQSIYGWRGAVVDNIHNYVKDLKN--------VEIIKLEQNYRSTKN 285

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL V + V    +N                         +LW        +  + ++   
Sbjct: 286 ILKVANSVIKNNDNRMSK---------------------ELW-------SAAEDGEKVEL 317

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               +   +       A+ I   I  +              +   DI +L R    + ++
Sbjct: 318 YCAVNERDE-------AKYIIDKIRQLHNDG----------VDYSDIAILYRSNYLSRVL 360

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                       I       F   D   IKD +A  R  ++  D+L+F  ++ +P     
Sbjct: 361 EES----CIYASIPYRIYGGFRFFDRAEIKDALAYLRLAVTNSDNLAFERIINTPTRGIG 416

Query: 450 EDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHD 502
              +  I    +  + + ++                S     I+ I  +       S   
Sbjct: 417 NKTLETIRNYAQINSLSYWQATLDVIQKGLVTKRTASLLLKFIELISGISAQISQHSLDK 476

Query: 503 FFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE------QNSYSSLQELISE 553
               ++        +         + ID L E ++     E       ++   LQ+ +S 
Sbjct: 477 LLESVINQSGLLASYQEKDSEKDRQKIDNLKELISAAKDFEPQIELLDDNIDILQDFLSF 536

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                           + V++MT+H +KGLE   VFLV     VF    I          
Sbjct: 537 AVLEAGE--MQADEATDSVQLMTIHASKGLEFRYVFLVAAEEGVFPPSSIVNS------- 587

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            +  +      +    E  RL YV +TRA   L I      +  
Sbjct: 588 ---------------EEVFDNTSSKKMQEKLAEERRLFYVAVTRAMKALTISYAQVRNIF 632

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            +S+ +     V +         K++   +  K +  A
Sbjct: 633 GRSSFQVKSRFVAEIDSQHLSQGKLEFAAAKPKTKQKA 670


>gi|301163499|emb|CBW23050.1| putative helicase [Bacteroides fragilis 638R]
          Length = 786

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 104/689 (15%), Positives = 218/689 (31%), Gaps = 129/689 (18%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             A +   + + + Y E  ++   +DF+DL++ T  L +       +  +  ++  ++L+
Sbjct: 168 LAAKMPAIRDIYSRYWERCRQAGAMDFDDLLVYTYILFRDFPD---VLARYREQFRYVLV 224

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +
Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           I             + +L  ++RST  I+   + +    E        S           
Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                           + +       + +Y D    +         +   I+ +      
Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    +  D  +L R    + +     R       +               IKD++
Sbjct: 349 ------HDYEYSDFAILYRTNAQSRVFEEALR----KRGMPYKIYGGLSFYQRKEIKDII 398

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474
           A  R +++  D+ +F  ++  P     +  + KI T       +++  + +         
Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATDNNVSLWTALCEPITYGLSIN 458

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
               +K Q     I + +      + ++  T I+       +       E     + ++E
Sbjct: 459 KGTHTKLQDFRALIEQFMADVTVKNAYEIGTEIIRQSGIINEVCQDNSPENLSRKENIEE 518

Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            +N         + E N+  SL + +SE+             +  +V +MTVH+AKGLE 
Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+V     +F                                              E
Sbjct: 578 RNVFVVGMEENLFPSGMAGDSP----------------------------------RAME 603

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YV +TRA +   +          K    +    + D      ++ +        
Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSI 663

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP-------YILN 758
            +    +        +     E    +   ++   ++  + I                L+
Sbjct: 664 DEGAGRFRREMEEGYSRRSSSERFSARPSADRPERERPKAQIIAPTVPRNLKKVSGTTLS 723

Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786
           PS+    G   ++   + +++ F  G +I
Sbjct: 724 PSSASGAGVAGVQPGQTIEHERFGLGEVI 752


>gi|50914312|ref|YP_060284.1| DNA helicase II [Streptococcus pyogenes MGAS10394]
 gi|94990600|ref|YP_598700.1| DNA helicase II [Streptococcus pyogenes MGAS10270]
 gi|50903386|gb|AAT87101.1| DNA helicase II [Streptococcus pyogenes MGAS10394]
 gi|94544108|gb|ABF34156.1| DNA helicase II [Streptococcus pyogenes MGAS10270]
          Length = 772

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 115/650 (17%), Positives = 204/650 (31%), Gaps = 123/650 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  LDF+DLI+ T  L    D +  +     Q   +I +DE QD
Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TISNM          +
Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +     KD  VL R    +  I            I               I+DL+A    
Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481
           + +  D++SF  ++  P        + K+        +++ E                  
Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   + +L       S  D    +L           +   E    I+ ++EFL+ T  
Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516

Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +++             L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                              EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   KS+       + +        K +      +    
Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            + E  T   +   L      ++   + +   +              + P
Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTIPSASTSSVLP 710


>gi|53713817|ref|YP_099809.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46]
 gi|52216682|dbj|BAD49275.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46]
          Length = 786

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 104/689 (15%), Positives = 213/689 (30%), Gaps = 129/689 (18%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             A +   + + + Y E  ++   +DF+DL++ T  L +       +  +  ++  ++L+
Sbjct: 168 LAAKMPAIRDIYSRYWERCRQAGAMDFDDLLVYTYILFRDFPD---VLARYREQFRYVLV 224

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +
Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           I             + +L  ++RST  I+   + +    E        S           
Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                           + +       + +Y D    +         +   I+ +      
Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    +  D  +L R    + +     R       +               IKD++
Sbjct: 349 ------HDYEYSDFAILYRTNAQSRVFEEALR----KRGMPYKIYGGLSFYQRKEIKDII 398

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474
           A  R +++  D+ +F  ++  P     +  + KI T       +++  + +         
Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATDNNVSLWTALCEPITYGLSIN 458

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
               +K Q     I + +      + ++  T I+       +       E     + ++E
Sbjct: 459 KGTHTKLQDFRALIEQFMADVTVKNAYEIGTEIIRQSGIINEVCQDNSPENLSRKENIEE 518

Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            +N         + E N+  SL + +SE+             +  +V +MTVH+AKGLE 
Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+V     +F                                              E
Sbjct: 578 RNVFVVGMEENLFPSGMAGDSP----------------------------------RAME 603

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YV +TRA +   +          K    +    + D      ++ +        
Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSI 663

Query: 706 KDEWIAYEWSTHHP-------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            +    +              E           +    +        P          L+
Sbjct: 664 DEGAGRFRREMEEGYSRRSSSERFSARPSADRPEREQPKAQIIAPTVPRNLKKVSGTTLS 723

Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786
           PS+    G   ++   + +++ F  G +I
Sbjct: 724 PSSASGAGVAGVQPGQTIEHERFGLGEVI 752


>gi|294790788|ref|ZP_06755946.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304]
 gi|294458685|gb|EFG27038.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304]
          Length = 885

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 111/672 (16%), Positives = 205/672 (30%), Gaps = 124/672 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT---YKMFKSTLASLTLAKYLNAHYE 138
           K    + I     D K  L+ +Q +  +    F+             +  +   +   Y+
Sbjct: 166 KRYTPRAILSTISDWKNSLEDAQTKLSEYAPDFHPDIPVHSLGDGGNAERVYAIVYGEYQ 225

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                   +DF+DLI+ T +L ++   +        +   +I +DE QDT+  Q+++IR+
Sbjct: 226 HRLASANAVDFDDLIMRTVELFRRSPQA---LDFYRRRFLYIFVDEYQDTNHAQYQLIRA 282

Query: 199 LTE--------------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           L+               D    + T   P  +  VGD  QSIY+F GA+   +L  ++  
Sbjct: 283 LSGVDETVHTSQTQTDTDSSRPEATPVRPAWITVVGDSDQSIYAFRGADISNILDFEKDF 342

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +           I L  ++RST  IL   + V S  +  +                   
Sbjct: 343 PQ--------AKTIMLEQNYRSTQTILDAANAVISQNQGRKPKK---------------- 378

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW  +                          +A    + +A TI+ +        
Sbjct: 379 -----LWTDLGQGDSIVGFAA--------------DNAQQEGQWVARTIAQLAAEGE--- 416

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                     D+ ++ R    +  +            I           +   IKD +A 
Sbjct: 417 ------YSYSDMAIMYRANAQSRALEEAL----ISAGIPYQLVGGTKFYERREIKDALAY 466

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCG 477
            + + +  DD++   +L  P           +      E  T ++ I +        +  
Sbjct: 467 LQCLSNPADDVNTRRILNVPKRGLGPRAESMLNAYASQEDITFWQAINRAESIPGMTSRI 526

Query: 478 ISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
           +   Q     +  L   AQ     P      +L      ++       +    +D L + 
Sbjct: 527 LHPLQAFRDLMTGLRTFAQDNDSHPAAIVQQVLQESGILRELEKSLDPQDMSRVDNLSQL 586

Query: 533 LNFTLRNEQNS-YSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            +     EQ +  ++L   +                 N  +V +MT+HTAKGLE PVVFL
Sbjct: 587 QSVAAEFEQTAMDATLSGFLETTSLVADADALPDQGENRGQVTLMTLHTAKGLEYPVVFL 646

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F H                                        +S   E  RL
Sbjct: 647 TGMEEGTFPH----------------------------------ARSMENESELSEERRL 672

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            YVG+TRA  +L + + +  +      +      + +         + + T+   +  W 
Sbjct: 673 AYVGITRARRRLYLTRSAVRAQWGNVQELMPSRFLDEIPQELISWDRKEATSERIRSRWA 732

Query: 711 AYEWSTHHPENT 722
             +      E  
Sbjct: 733 QGDDDWDGDEAE 744


>gi|299143270|ref|ZP_07036350.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str.
            F0131]
 gi|298517755|gb|EFI41494.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str.
            F0131]
          Length = 1036

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 168/927 (18%), Positives = 330/927 (35%), Gaps = 120/927 (12%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
            +         +D +  +    E GN   L      ++      I++ F   +  F     
Sbjct: 191  EFLNEISKIKTDFSTLIYWIHELGNHKKLASNSKFRKLYAGDDIKKFFESPNFDFF---- 246

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
               ++ +    NK+  ++  K++       ++ +     K ++       + K +   Y 
Sbjct: 247  EKIRSCVQDSKNKEIYEIMGKIRLEMLRL-ELVNEPKNQKYYELIT---DILKDIEIEYT 302

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K++   LD+EDL      +L            ID E  +I++DE QDT+ IQ E+++ 
Sbjct: 303  FKKREKNYLDYEDLQKYALKILNSE---------IDIEYKYIMVDEFQDTNKIQTEILKK 353

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            LT +        S    LF VGD KQSIY F G +  +  +  +  + +          +
Sbjct: 354  LTNNL-------SDNVNLFVVGDAKQSIYGFRGGDLSQYKKFVKEMESK------DCISL 400

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            ++  ++RS++ ++   +++F                               L E+  + +
Sbjct: 401  DMNENYRSSSSLIESFNELFPKI----------------------------LGEEYTNLN 432

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
             +    ++     + D   +   A   A  I   I   I                KDI +
Sbjct: 433  ANLKGDEKIKILEFCDDSKESVVA---ANYIDSLIKAGIDK--------------KDIAI 475

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            L R  K+                ISV    +   ++   I+D++ L + + +  D L+ +
Sbjct: 476  LFRTAKNMESFESEL----ISRNISVNNTAK-KFSEFREIRDIIVLLKALSNNRDILNIL 530

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETV-YEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
               KSPL   SE+ IFK+  +  +T+ + +E  ++  +     F + I     L      
Sbjct: 531  AYFKSPLVGLSENSIFKLALRSKDTDILNFELEKELDDRDKELFNNGISKYFTLREYKNV 590

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
             +  +F  +++   +  + F   FG   I  +D+ +  +   E+ S  +L+E I+ ++  
Sbjct: 591  LTLSEFIAMVVKELRCYEIFRMCFGKNSILNIDKLILLSNEFEKKSL-NLEEFINYVQN- 648

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
               +        + V +MT+H +KGLE   + L D    +        + I  +      
Sbjct: 649  ---VVLDGEKTEDAVTLMTIHKSKGLEFDHIILSDFKKNLLKKPTENIIKIGENGLG--- 702

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-IICKHSNTS----- 671
                  + K+R +    +I+  K +  EE  R+ YV  TRA   L  +            
Sbjct: 703  -----IKIKNRESKYYFIIEAEKLNELEEERRIFYVAATRAKKTLTFLSCKYKEKEDIEK 757

Query: 672  NEKKSNQRTWYDMVYDSFHNDE--RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
              + + + ++++++ ++  N+        +     +K             EN  L R+E 
Sbjct: 758  GNENNVKNSYHELLKNTQFNNLKIISPSYEEVLRNSKPNIFEKLNMIGDFENNTLIRDEY 817

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
              +    +      +   K D    Y       + + K    S         RG+I+HK 
Sbjct: 818  FDRNKQFRYYSASGYMAFKKDPVSFYRTYILGDEIEYKPEG-SEYEGIDPIKRGIIVHKY 876

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
             Q            F+     +N           L   I  + ++   T           
Sbjct: 877  AQFCP----SDIDEFLKRELEQNDIAVTNYVLDLLKDRIKNVDKSQRGTILHR------- 925

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                +   P K+ II+G IDQI     +I I ++KT H   + IE+    +  QL IY +
Sbjct: 926  --EYEFYYPVKNGIINGFIDQIREVNGDIEIIDFKTGHLTKESIEY----YKLQLQIYTR 979

Query: 910  ILKDSYPNKSLVCLLIYVSEPKVFIIP 936
              +          +LI +++     I 
Sbjct: 980  AYESISGKHVKSAILISLADNTEHEID 1006


>gi|168214037|ref|ZP_02639662.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str.
           F4969]
 gi|170714486|gb|EDT26668.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str.
           F4969]
          Length = 1271

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/652 (19%), Positives = 227/652 (34%), Gaps = 55/652 (8%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             F  L S         +    T+ +  +S  + E L+ +  E           KM+   
Sbjct: 279 ASFGRLKSVRKASVDDERALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178
                L    +  Y + K++  +LDF DL     ++L  +D       + +  +   +  
Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDKFE 398

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +L+DE QD++ IQ  ++  ++               +F VGD KQSIY F  A P+  L
Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296
            +    ++           I L  +FRS  +I+  V+ +F    +     L  D    + 
Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343
             +S           E +    + +     E                   +      S  
Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSDDDELGEEEEDLDSIK 567

Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           + AR I   I+ ++  +            GK R I+ KDI++L+R  K+           
Sbjct: 568 LEARIIGKKINELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWS---ETFVDE 624

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              Y I V  +        + I+ ++AL   I +   D+  +  L+SP+F+F+ ++   +
Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684

Query: 457 CTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                +              Y +  +     K ++ + Y+++    A +    +F   + 
Sbjct: 685 RLLNRDKYFFEIIKEVVDGTYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562
                         G +    L        + E  S+  L   I+ +             
Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +    N N VRIM++H +KGLE PVV L  TG Q       + + +  +L          
Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            + K        + K  +     E  R+LYV  TRA ++LII    +   + 
Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKS 916



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 19/187 (10%)

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
            E    +     +G I H ++Q I                    K    +E   ++    I
Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144

Query: 829  TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871
             +  ++ +    +S        Y E+    +I               ++ + + G ID  
Sbjct: 1145 QKFFKSELGQRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
               +    + +YKT +    E E     +  Q+++Y+  L      +     L      K
Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEEDFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLEK 1264

Query: 932  VFIIPQN 938
               I + 
Sbjct: 1265 ELKISKE 1271


>gi|303233897|ref|ZP_07320546.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna
           BVS033A4]
 gi|302494822|gb|EFL54579.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna
           BVS033A4]
          Length = 724

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 101/577 (17%), Positives = 187/577 (32%), Gaps = 122/577 (21%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                             ++  T    L   YE   K+   LDF+DLI+ TN L ++   
Sbjct: 144 RLKNAGATEKNIDKEDFDISLSTFTMELFQKYEHKLKRYNSLDFDDLIVKTNLLFEENPD 203

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +R K      ++ +DE QDT+  Q+++I++L           S    +  VGD  QS
Sbjct: 204 ---LREKYSDRFKYVFVDEYQDTNDTQYKLIKNLV----------SKNDNICCVGDSDQS 250

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY + GA  + +   ++  +           +I L  ++RST  IL + + V       +
Sbjct: 251 IYGWRGANIQNIQNFEKDFKN--------AKVILLEQNYRSTQPILDLANTVIKNNSLRK 302

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             +                     LW    ++++      +  ++   +           
Sbjct: 303 DKN---------------------LW---TAKNEGDMPIYRRMYSDIDE----------- 327

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A ++   I             + R    +++ +L R    + L       L     I   
Sbjct: 328 ADQVVQWIEQ----------ERYRENPYEEMAILYRTNAQSRLFEERLNRL----GIPNR 373

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETE 464
                   D   IKD ++  R + +  D+++   ++  P     +  + K +   ++ + 
Sbjct: 374 VVGGLKFYDRKEIKDCVSYLRIVENLNDNMALNRIINEPKRGIGKTTMDKLLQCSQNRSI 433

Query: 465 TVYEYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518
           ++ +YI+      F+N    K Q     I          +  +    IL     R     
Sbjct: 434 SMMQYIKDTDLPDFSNATAKKLQEFYYLIKSFPK--DQMNVAELMEYILDKTGYRANLEK 491

Query: 519 --SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIM 575
             +R     ++ +DE+++   +  Q++    + L   LE             N   V +M
Sbjct: 492 STNRDDKTRMENIDEYVSSLYQFVQDNPD--KNLREYLETSSLMTDLDKTDDNTKGVSMM 549

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE  VVF           +                                  
Sbjct: 550 TIHAAKGLEFDVVFFTGLEEGTIPSRV--------------------------------- 576

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                    EE  RL YV +TRA  +L I    +   
Sbjct: 577 -----DEDVEEERRLCYVAITRARKKLYITSVQSRRR 608


>gi|271962781|ref|YP_003336977.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021]
 gi|270505956|gb|ACZ84234.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021]
          Length = 762

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/620 (16%), Positives = 197/620 (31%), Gaps = 112/620 (18%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              +++            +Y+    +   +DF+DLI+ T  L +   +   +     +  
Sbjct: 175 AAGQASSHLERTLAEAYRNYQRKLTEAGAMDFDDLIMLTVTLFQ---IFPDVAEHYRRRW 231

Query: 178 NHILIDEVQDTSLIQWEVIRSLTE--DFFVGKNTHSSPRT-----LFAVGDEKQSIYSFH 230
            H+++DE QDT+  Q+ +IR L    +            T     L  VGD  QSIY+F 
Sbjct: 232 RHVMVDEYQDTNHAQYTLIRELVGAPELRTADGDLVREGTIAPAELCVVGDADQSIYAFR 291

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + +L  +R               I L  ++RST  IL+  + V S  E+ +  +  
Sbjct: 292 GATIRNILEFERDYPN--------AKTILLEQNYRSTQTILSAANAVISRNESRKPKNLW 343

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           S                           D    P+   + +  +           A  +A
Sbjct: 344 S---------------------------DQGAGPKIVGYVADNEHDE--------AMFVA 368

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +  +   +          +    + V  R    + +   +         +        
Sbjct: 369 QEVDKLTDDE---------GVVPGQVAVFYRTNAASRVFEEIF----IRTGLPYKVVGGV 415

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY 469
              +   ++DL+A  R + +  D +S   +L  P     +     +      E    +E 
Sbjct: 416 RFYERKEVRDLLAYLRVLANPNDVVSLRRILNVPKRGIGDRAEAMVEAFASRERIPFWEG 475

Query: 470 IQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           +++       A   ++  +  +  + EL+  A    P +    +L +   R +  +    
Sbjct: 476 LRRADEAPGMATRSLNAIREFVALMEELMAKAAGTPPSELAQEVLESTGYRTELATSGDP 535

Query: 524 E---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAH-SANHNEVRIMTVH 578
           +    ++ LDE ++     E+ +    L E + ++       +          V +MT+H
Sbjct: 536 QDESRLENLDEMISVASEFEEANPEGTLVEFLEQVSLVADADQIPAGDGGQGVVTLMTLH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           TAKGLE PVVFL      VF H                                      
Sbjct: 596 TAKGLEFPVVFLTGMEDGVFPHMRSLGEP------------------------------- 624

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 EE  RL YVG+TRA  +L + + +  S+            V +        +  
Sbjct: 625 ---KELEEERRLAYVGITRAEKRLYVSRAAVRSSWGAPAFNPASRFVAEIPGELVDWRGD 681

Query: 699 KLTNSINKDEWIAYEWSTHH 718
              N+ +             
Sbjct: 682 PGKNAWSAGTSRRETRPAPA 701


>gi|241667801|ref|ZP_04755379.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876345|ref|ZP_05249055.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842366|gb|EET20780.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 742

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 102/578 (17%), Positives = 183/578 (31%), Gaps = 110/578 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            ++   YEE    +  LDF DL++   +L     ++  +R        +ILIDE QDT+ 
Sbjct: 168 AHIYTAYEERLLLDNALDFADLLLYLYELFS---LNQQLREYYQSLFKYILIDEFQDTNQ 224

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+  ++ L  D             + AVGD+ QSIY + GA    +         +   
Sbjct: 225 VQYMWLKLLVTD----------NNYMMAVGDDDQSIYGWRGAVVDNI--------HKYVA 266

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II+L  ++RST +IL V + V    +N                         +L
Sbjct: 267 DLNDVEIIKLEQNYRSTKNILKVANSVIKNNDNRMSK---------------------EL 305

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W        +  + ++       +   +       A+ I   I  +              
Sbjct: 306 W-------SAAEDGEKVEVYCAVNERDE-------AKYIIDKIRQLHDEG---------- 341

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +   DI +L R    + ++            I       F   D   +KD +A  R  ++
Sbjct: 342 VDYSDIAILYRSNYLSRVLEES----CIYASIPYRIYGGFRFFDRAEVKDALAYLRLAVT 397

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFAN------CGISKFQH 483
             D+L+F  ++ +P        +  I         + ++                S    
Sbjct: 398 SNDNLAFERIINTPTRGIGNKTLDTIRNFSQINNVSYWQATIDIIQKEIVTKRTASLLLK 457

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE 540
            I+ I+ +    +  S       ++        +         + ID L E ++     E
Sbjct: 458 FIEIINAISSQIKDLSLDKLLETVINESGLLASYQEKDTEKDRQKIDNLKELISAAKDFE 517

Query: 541 ------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                  ++   LQ+ +S               N + V++MT+H +KGLE   VFLV   
Sbjct: 518 PQIELLDDNTDILQDFLSFAVLEAGE--MQADENTDSVQLMTIHASKGLEFRYVFLVAAE 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             VF    I                             +       +    E  RL YV 
Sbjct: 576 EGVFPPSSIIN----------------------AEEAYTSAESKKIQEKLAEERRLFYVA 613

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           +TRA   L I      +   +S+ +     + +     
Sbjct: 614 VTRAMKALTISYAQVRNIFGRSSFQVKSRFLMEIDSEH 651


>gi|313888327|ref|ZP_07821998.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845730|gb|EFR33120.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 734

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 101/588 (17%), Positives = 185/588 (31%), Gaps = 118/588 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YE+    N  LDF+DL+I T D+L+  +    +R     +  +I +DE QDT+
Sbjct: 168 LGKIYEIYEKKLVSNNALDFDDLLIKTVDILRDYED---VRSFYRSKFEYIFVDEYQDTN 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ+E I+ +                L  VGD  QSIY + GA+   +L   +       
Sbjct: 225 KIQYEFIKLVAG----------KEPNLTVVGDNDQSIYKWRGADINNILNFHKDFP---- 270

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  I++L  ++RST  IL V +K+          +                     
Sbjct: 271 ----GAKIVKLEQNYRSTQKILEVANKIIENNRTRIEKN--------------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW        S+   +   +  +  S  +E         +   I  +             
Sbjct: 306 LW-------TSRNEGKPVVYREFPHSNEEEYG-------VINKIIGLHYKGE-------- 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + KD+ +L R    +               I           D + +KD++A  R I 
Sbjct: 344 --EFKDMAILYRTNAQSRGFEEAL----VRESIPYKIVGGLKFYDRMEVKDILAYLRAIN 397

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY------EYIQKFANCGISKFQ 482
           + +D++S   ++  P     +  +   +        ++Y      +  +          +
Sbjct: 398 NTDDNVSLSRIINRPKRGIGDTSLADLLDYADKNGISLYNLVANIDKFEDLNIRARKNVR 457

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539
                +  L   ++  S    F  +L      +   S+   E     + ++E  +  +  
Sbjct: 458 DFGSILKILKDRSEKLSIGKLFEEVLYESGYVEDLKSQNTIEAKTRLENIEELHSNIMEY 517

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           ++       EL   L           ++  + V +MT+H AKGLE   VFLV     +F 
Sbjct: 518 DREGV----ELAEYLNTLSLLSDVDKTSEESGVNLMTMHAAKGLEFSTVFLVGFEEGLFP 573

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                +                                           RL YVG+TRA 
Sbjct: 574 SNRSIESEDEVEEE----------------------------------RRLCYVGVTRAC 599

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           + L I      S   K         +++     + ++         +D
Sbjct: 600 NNLFISSSRTRSMYGKLTPAKRSRFIHEMGETIKIIEDKSRELLEIRD 647


>gi|312862860|ref|ZP_07723100.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396]
 gi|311101720|gb|EFQ59923.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396]
          Length = 769

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 116/712 (16%), Positives = 220/712 (30%), Gaps = 136/712 (19%)

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              E+ +L+     T    P+K      +   S    + L +   E              
Sbjct: 112 DPGEQRTLMKRILKTLNLDPKKWNERAILGTISNAKNDLLDEVAYE-------------H 158

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           ++      +       Y+E  +++  +DF+DLI+ T  L  K      +     Q   +I
Sbjct: 159 QAGDMYTQIVAKCYKSYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYI 215

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            +DE QDT+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  
Sbjct: 216 HVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDF 265

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           ++   +          ++ L  ++RST  IL   ++V     N +               
Sbjct: 266 EKDYPE--------AKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------ 305

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW           + +Q  +    D   +       A  +A TI N++  +
Sbjct: 306 ---------LW-------TQNDDGEQIVYYRANDERDE-------AVFVASTIDNIVREE 342

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                        KD  VL R    +  I            I               I+D
Sbjct: 343 GK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRD 389

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-- 477
           +++    I +  D++SF  ++  P        + KI      +  ++ +           
Sbjct: 390 VISYLNLIANPSDNISFERVVNEPKRGVGPGTLEKIRNFAYEQNMSLLDASANIMLSPIK 449

Query: 478 ---ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
                        I  L       S  +    IL           +   E    I+ ++E
Sbjct: 450 GKAAQGVYDFANTILNLRDQLDGLSITETVEAILDKSGYLDALSMQQTLESQARIENIEE 509

Query: 532 FLNFTLRNEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
           F++ T   ++ +            L   +++L     T      A    V +MT+H AKG
Sbjct: 510 FMSVTKNFDETNTDGTEDETGIDRLGRFLNDLALIADTDDGDMEAAE--VTLMTLHAAKG 567

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFL+     VF      +                                     
Sbjct: 568 LEFPVVFLIGMEEGVFPLSRSSEDPEELEEER---------------------------- 599

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                 RL YVG+TRA + L +   +  +   K++       + +   +  + + +    
Sbjct: 600 ------RLAYVGITRAEEILFLTNANTRTLFGKTSYNRPSRFLREISDDLLQYQGLARPA 653

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
           + +       E  T   +   L++    ++   + +         K     P
Sbjct: 654 NSSFGVRFTKEEPTQFGQGMSLQQALQTRKANAQPQRHTGAQPFSKATGGLP 705


>gi|167627248|ref|YP_001677748.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167597249|gb|ABZ87247.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 742

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 102/576 (17%), Positives = 182/576 (31%), Gaps = 110/576 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE    +  LDF DL++   +L     ++  +R        +ILIDE QDT+ +Q
Sbjct: 170 IYTAYEERLLLDNALDFADLLLYLYELFS---LNQQLREYYQSLFRYILIDEFQDTNQVQ 226

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  ++ L  D             + AVGD+ QSIY + GA    +         +     
Sbjct: 227 YMWLKLLVTD----------NNYMMAVGDDDQSIYGWRGAVVDNI--------HKYVADL 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               II+L  ++RST +IL V + V    +N                         +LW 
Sbjct: 269 NDVEIIKLEQNYRSTKNILKVANSVIKNNDNRMSK---------------------ELW- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  +  + ++       +   +       A+ I   I  +              + 
Sbjct: 307 ------SAAEDGEKVEVYCAVNERDE-------AKYIIDKIRQLHDGG----------VD 343

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             DI +L R    + ++            I       F   D   +KD +A  R  ++  
Sbjct: 344 YSDIAILYRSNYLSRVLEES----CIYTSIPYRIYGGFRFFDRAEVKDALAYLRLAVTSN 399

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFAN------CGISKFQHVI 485
           D+L+F  ++ +P        +  I         + ++                S     I
Sbjct: 400 DNLAFERIINTPTRGIGNKTLDTIRNFSQINNVSYWQATIDIIQKEIVTKRTASLLLKFI 459

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE-- 540
           + I+ +    +  S       ++        +         + ID L E ++     E  
Sbjct: 460 EIINAISSQIKDLSLDKLLETVINESGLLASYQEKDTEKDRQKIDNLKELISAAKDFEPQ 519

Query: 541 ----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                ++   LQ+ +S               N + V++MT+H +KGLE   VFLV     
Sbjct: 520 IELLDDNTDILQDFLSFAVLEAGE--MQADENTDSVQLMTIHASKGLEFRYVFLVAAEEG 577

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           VF    I                             +       +    E  RL YV +T
Sbjct: 578 VFPPSSIIN----------------------AEEAYTSSESKKIQEKLAEERRLFYVAVT 615

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           RA   L I      +   +S+ +     + +     
Sbjct: 616 RAMKALTISYAQVRNIFGRSSFQVKSRFLMEIDSEH 651


>gi|168217733|ref|ZP_02643358.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC
           8239]
 gi|182380203|gb|EDT77682.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC
           8239]
          Length = 1271

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 124/652 (19%), Positives = 229/652 (35%), Gaps = 55/652 (8%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             F  L S         +    T+ +  +S  + E L+ +  E           KM+   
Sbjct: 279 ASFGRLKSVRKASVDDEKALEKTKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178
                L    +  Y + K++  +LDF DL     ++L  +D       + +  +   +  
Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDKFE 398

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +L+DE QD++ IQ  ++  ++               +F VGD KQSIY F  A P+  L
Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296
            +    ++           I L  +FRS  +I+  V+ +F    +     L  D    + 
Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-------------SWTSYFDSLPQESSAS 343
             +S           E +    + + +   E             +     +      S  
Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVSGDIELNILNKAGNKDYSNDDELGEEEEDLDSIQ 567

Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           + AR I   I+ ++  +            GK R I+ KDI++L+R  K+           
Sbjct: 568 LEARIIGKKINELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---ETFVDE 624

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              Y I V  +        + I+ ++AL   I +   D+  +  L+SP+F+F+ ++   +
Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684

Query: 457 CTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                +              Y +  +     K ++ + Y+++    A +    +F   + 
Sbjct: 685 RLLNKDKYFFEIIKEVVDGIYDESISKELKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562
                         G +    L        + E  S+  L   I+ +             
Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +    N N VRIM++H +KGLE PVV L  TG Q       + + +  +L          
Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            + K        + K  +     E  R+LYV  TRA ++LII    +   + 
Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKS 916



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 19/187 (10%)

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
            E    +     +G I H ++Q I                    K    +E   ++    I
Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144

Query: 829  TRLLENPMMTTAM-----SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871
             +  ++ +    +         Y E+    +I               ++ + + G ID  
Sbjct: 1145 QKFFKSDLGQRMLNSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
               +    + +YKT +    E E     +  Q+++Y+  L      +     L      +
Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEEDFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLER 1264

Query: 932  VFIIPQN 938
               I + 
Sbjct: 1265 ELKISKE 1271


>gi|183984523|ref|YP_001852814.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M]
 gi|183177849|gb|ACC42959.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M]
          Length = 769

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 109/654 (16%), Positives = 196/654 (29%), Gaps = 123/654 (18%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L   +   ++E I          + + +         + A Y+   +    LDF+DLI  
Sbjct: 148 LANAISNLKNELID--PDRAVSDLSEDSDDLARTVASVYAEYQRRLRAANALDFDDLIGE 205

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
           T  +L+       I     +   H+L+DE QDT+  Q+ ++R L       +     P  
Sbjct: 206 TVGILQ---AFPDIAGHYRRRFRHVLVDEYQDTNHAQYVLVRELVGRGSEDEPGDVPPAQ 262

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD  QSIY+F GA  + +   +R             + I L  ++RST +IL+  +
Sbjct: 263 LCVVGDADQSIYAFRGATIRNIEDFERDYP--------DATTILLEQNYRSTQNILSAAN 314

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            V S     +                        LW             +        + 
Sbjct: 315 SVISRNSGRREKR---------------------LW-------TDAGAGELIVGYVADNE 346

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +       AR +A  I  +   D          I   D+ V  R    +  +  +   
Sbjct: 347 HDE-------ARFVAEEIDALAERDE---------ITYNDVAVFYRTNNSSRSLEEVF-- 388

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 I           +   I+D++A  R + +  D +S   +L +P     +     
Sbjct: 389 --IRAGIPYKVVGGVRFYERKEIRDIIAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEAC 446

Query: 456 ICTQRHETETVYE---------YIQKFANCGISKFQHVIKYIHELIHI--AQFCSPHDFF 504
           +      T   +           +    +         ++ + EL     +      +  
Sbjct: 447 VAVYAENTGAGFSDALVAAAEGKVPMLNSRAEKAIAGFVELLDELRGRLDSSEGDLGELV 506

Query: 505 TLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------------EQNSYSSLQE 549
             +L     R++  S    +    +D L+E ++                 +         
Sbjct: 507 EAVLERTGYRRELESSTDPQELARLDNLNELVSVAHEFSTDLANAAEPEPDAEDVPDTGM 566

Query: 550 LISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           L + LE+            H    V +MT+HTAKGLE PVVF+      +F H       
Sbjct: 567 LAAFLERVSLVADTDDIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDP 626

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                                 E  RL YVG+TRA  +L + + 
Sbjct: 627 T----------------------------------ELSEERRLAYVGITRARQRLYLSRA 652

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
              S+  +         + +        +++    S +     A  + T     
Sbjct: 653 IVRSSWGQPMLNPESRFLREIPQELLNWRRLAPKPSFSAPVSGAGRFGTARSAP 706


>gi|225856731|ref|YP_002738242.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031]
 gi|225724965|gb|ACO20817.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031]
          Length = 763

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 100/592 (16%), Positives = 190/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQAANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGPGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF      +                                           RL
Sbjct: 575 IGMEENVFPLSRATEDTDELEEE----------------------------------RRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|284992801|ref|YP_003411355.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM
           43160]
 gi|284066046|gb|ADB76984.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM
           43160]
          Length = 765

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 105/630 (16%), Positives = 203/630 (32%), Gaps = 110/630 (17%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +    +   +++     + F    A   + K     Y+   ++   +DF+DLI+ T  LL
Sbjct: 163 RSLAAQVSNLKNELVDEESFSPQTAPEKVLKEAYTLYQRRLREAHAMDFDDLIMTTVHLL 222

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +       +     +   H+L+DE QDT+  Q+ ++R L             P  L  VG
Sbjct: 223 Q---AFPDVAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVG----TGEGPVPPAELCVVG 275

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  QSIY+F GA  + +   +R   +         + I L  ++RST  IL   ++V + 
Sbjct: 276 DADQSIYAFRGATIRNIDEFERDYPQ--------ATTILLEQNYRSTQRILKAANQVIAK 327

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
               +  +                     LW           + +        +   +  
Sbjct: 328 NTGRRPKN---------------------LW-------TDAGDGELIEGYVAENEHDE-- 357

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  +A  I  ++              + KDI V  R    + +   +        
Sbjct: 358 -----AAWVAEQIDALVDEGE---------ARPKDIAVFYRTNNASRVFEEVF----IRV 399

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            +           +   ++D +A  + + +  D +S   ++  P     +     I +  
Sbjct: 400 GMPYKVVGGVRFYERKEVRDALAYLKLVANPADVVSLRRIINVPKRGIGDKAEGCIESFA 459

Query: 461 HETETVYEYIQK-------FANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKK 512
                 +    +        A   +   Q  +  + E   +A+  S P      IL    
Sbjct: 460 DRERIAFGSALRRCSEVTTLAPRSLKAVQEFVALLEEFEQLAETGSGPAALLESILDRTG 519

Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSAN 568
              +  +    +    +D L+E ++     E  +   S+ + + ++       +   + +
Sbjct: 520 YLAELQASTDPQDEGRVDNLNELISVAAEFEAANPGGSVPDFLEQVSLVADADQIPVAGD 579

Query: 569 H-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               V +MT+HTAKGLE PVVFL      VF H                           
Sbjct: 580 DAGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPH--------------------------- 612

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                  L         EE  RL YVG+TRA  +L I + +  ++  +         + +
Sbjct: 613 -------LRALGDPRELEEERRLAYVGITRARQRLFISRATVRTSWGQPAYNPPSRFLDE 665

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
              +  R    +   + +     A +    
Sbjct: 666 LPSDTVRWAGKEPVPAPSTGYRSAQQRVAA 695


>gi|291549932|emb|CBL26194.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14]
          Length = 768

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/669 (15%), Positives = 210/669 (31%), Gaps = 110/669 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L            
Sbjct: 27  GAGSGKTRVLTHRIAYLIGERGVNPWNILAITFTNKAAEEMRQRVDNLVGFGAESVWVST 86

Query: 66  FSL--------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQDEFI 108
           F                  + F       QK +I    ++++  +   KE+         
Sbjct: 87  FHSACVRILRRFIDRLGYENHFTIYDTDDQKTLIKEVCRKVDVDTKVFKER--SLLSAIS 144

Query: 109 KIRDRFNTYKMFKSTL----ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
             ++       F+       A + +AK +   YE   + N  LDF+DL++ T  LL+ + 
Sbjct: 145 SAKNEMILPDEFELNAGGDFAKMKIAK-VYREYEAQMRANNALDFDDLLVKTVQLLQTQP 203

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +   +I++DE QDT+ +Q++++  L   +          + L  VGD+ Q
Sbjct: 204 D---VLESYQERFRYIMVDEYQDTNTVQFQLVSLLAGKY----------KNLCVVGDDDQ 250

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY F GA  + +L  +               +I+L  ++RST +IL   + V +     
Sbjct: 251 SIYKFRGANIRNILDFEHEFP--------DAKVIKLEQNYRSTGNILNAANSVIANNRGR 302

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  S                     LW             +      +  +  +      
Sbjct: 303 KEKS---------------------LW-------TENGEGELIRLRQFDTAFDE------ 328

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A  I   I + +                 D  VL R    + L+      +     I  
Sbjct: 329 -ADFIGEDIKSAVRQGG----------SYNDSAVLYRTNAQSRLLEEKFIAM----NIPY 373

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHET 463
                        IKDL+A  + I +  DD++   ++  P        I +I        
Sbjct: 374 KIVGGVNFYARREIKDLLAYLKTIDNGRDDVAVRRIINVPKRGIGLTTINRIQESATERG 433

Query: 464 ETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
              YE +             +K       I     +A+  +  D    ++      +   
Sbjct: 434 IGFYEALLAPGLIAGVGRSATKLDSFAALIEYFKTLAEEMNITDLLQEVIEKTGYIESLE 493

Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQN-----SYSSLQELISELEQYPPTIKRAHSANHN 570
           +    E     + +DE ++     E++       ++L   + E+         +   +  
Sbjct: 494 NEDKEEAKTRKENIDELISKAATYEESCQDKDEKATLSGFLEEVALVADID--SLDEDQE 551

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V +MT+H+AKGLE P V+L      +F             L ++  +         +  
Sbjct: 552 YVVLMTLHSAKGLEFPRVYLAGMEDGLFPGYMSINAGDREELEEERRLCYVGITRAEQEL 611

Query: 631 IVSDLIKHL 639
            ++   + +
Sbjct: 612 TLTSARRRM 620


>gi|253565788|ref|ZP_04843243.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5]
 gi|251946067|gb|EES86474.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5]
          Length = 786

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 104/689 (15%), Positives = 217/689 (31%), Gaps = 129/689 (18%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             A +   + + + Y E  ++   +DF+DL++ T  L +       +  +  ++  ++L+
Sbjct: 168 LAAKMPAIRDIYSRYWERCRQAGAMDFDDLLVYTYILFRDFPD---VLARYREQFRYVLV 224

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +
Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           I             + +L  ++RST  I+   + +    E        S           
Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                           + +       + +Y D    +         +   I+ +      
Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    +  D  +L R    + +     R       +               IKD++
Sbjct: 349 ------HDYEYSDFAILYRTNAQSRVFEEALR----KRGMPYKIYGGLSFYQRKEIKDII 398

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474
           A  R +++  D+ +F  ++  P     +  + KI T       +++  + +         
Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATDNNVSLWTALCEPITYGLSIN 458

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
               +K Q     I + +      + ++  T I+       +       E     + ++E
Sbjct: 459 KGTHTKLQDFRALIEQFMADVTVKNAYEIGTEIIRQSGIINEVCQDNSPENLSRKENIEE 518

Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            +N         + E N+  SL + +SE+             +  +V +MTVH+AKGLE 
Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+V     +F                                              E
Sbjct: 578 RNVFVVGMEENLFPSGMAGDSP----------------------------------RAME 603

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YV +TRA +   +          K    +    + D      ++ +        
Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSI 663

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP-------YILN 758
            +    +        +     E    +   ++   ++    I                L+
Sbjct: 664 DEGAGRFRREMEEGYSRRSSSERFSARPSADRPERERPKVQIIAPTVPRNLKKVSGTTLS 723

Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786
           PS+    G   ++   + +++ F  G +I
Sbjct: 724 PSSASGAGVAGVQPGQTIEHERFGLGEVI 752


>gi|240142707|ref|YP_002967220.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A)
            [Methylobacterium extorquens AM1]
 gi|240012654|gb|ACS43879.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A)
            [Methylobacterium extorquens AM1]
          Length = 1116

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 152/876 (17%), Positives = 296/876 (33%), Gaps = 91/876 (10%)

Query: 92   KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
            ++    E  K          +        +  +  +   + +   Y++ K+   +LDF+D
Sbjct: 303  EADLFHEAAKALHGACCDTWESMRANAASELLVRLVVQVRVVLHRYQDRKRAGALLDFDD 362

Query: 152  LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF------FV 205
            LI +   LL+  +    +R  + +   H+L+DE QDT  +Q E++  L  +         
Sbjct: 363  LIASAATLLRDHE---EVRQALGRRYRHVLVDEFQDTDPLQAEILWLLCGELPADAAGAA 419

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
              +    P  LF VGD KQ+IY F GA+    ++ +   + ++        +I +  +FR
Sbjct: 420  WTDRVLRPGALFLVGDPKQAIYRFRGADVSTYVQARDCIRAKSPED-----VISVSTNFR 474

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            S   IL  VD  F      +G                 Q G V L           C   
Sbjct: 475  SCRSILAFVDNRFREVLQVEG-----------------QPGYVALDPFHEDHDRGPCVAA 517

Query: 326  QESWTSYFDS-LPQESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKR 383
             +   +  D     ++     A  +A   + +IG   +  +    R++QA DI +L    
Sbjct: 518  LDIPAAEGDGKRSADALRDAEAEAVADLCARLIGQRLVTCSRNGTRILQAGDIALLAPSG 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             D                I V             I+DL+AL R +    D L+   +L+ 
Sbjct: 578  SDLWRYEEALEA----RGIPVSTQAGKGFFRRQEIQDLIALTRVLADPRDTLALGALLRG 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIAQF 497
            P    +++++  +           +  QK       A+      + VI  +  L   A  
Sbjct: 634  PAVGLTDEELLDLVDGLPRDPERPDARQKLRLGLDVAHVAHPVAREVIGRLQVLARRALG 693

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQ-ELISE 553
             +PHD  +  + A + R     R           +D FL  +         +    + + 
Sbjct: 694  TTPHDILSQAVDAIRLRPVVRQRHDGHAERALANVDLFLEMSRPYAVRGLRAFARAMKAA 753

Query: 554  LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
             +    T++    A    V + T+H +KGLE PVV  ++T          +   +  +L 
Sbjct: 754  WDGRTRTVEGRPDAQEAAVSLFTMHASKGLEWPVVIPINT--------STRTKAVSGALV 805

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            D P   ++ P    R     D +   ++    E  RL YV  TRA + L++ +    S+ 
Sbjct: 806  DRPANCLYCPVFGVRPAGYEDALDRERREVVNERVRLWYVAATRARETLVLPRFPEPSDR 865

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-DEWIAYEWSTHHPENTPLEREETIKQ 732
                      +      +  R+    +       +E     +++         R   I  
Sbjct: 866  TSWASVIALGLDAVPAIDLGRLPLRPMVAVTETLNEQTREVFTSEAATVARHRRLTWIVP 925

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
              D+  +P    +  +        ++                       RG +IHKLL+ 
Sbjct: 926  SRDDAPVPGFEDAGSEPLPVPTETVS---------------APPQGGRERGTVIHKLLEE 970

Query: 793  IFTLPEHKRK--NFITSYCT------KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
            I T    +R        +        +      A +  ++   + R L  P +       
Sbjct: 971  ILTGELDERDGLEARARFLAGHLGPCEADGRPAALDPADIAACVARALALPQVAGI-RER 1029

Query: 845  SYSEVSVSGKINCPKKDIIISGRIDQISISQQNI--FIFEYKTHHHVPQEIEHIPYTHIA 902
              +EV V       +++   +G  D ++  ++     + ++K+     ++       + A
Sbjct: 1030 LRAEVPVYAYEALDEEERATAGVADALACDERGQPDVVVDWKSDVAPGKDA---LLGYRA 1086

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
            Q++ Y               L+++V++  V  +   
Sbjct: 1087 QVARYLAATGARL------GLIVFVTDGTVVSVTPA 1116


>gi|256844677|ref|ZP_05550162.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 125-2-CHN]
 gi|256613218|gb|EEU18422.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 125-2-CHN]
          Length = 748

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 125/774 (16%), Positives = 244/774 (31%), Gaps = 142/774 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMREREQKLLGPAANDIWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106
           F  L    L +            I   +  L                   +  L    + 
Sbjct: 90  FHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILAAISNG 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D      M  ++     +A  +   Y+   +++ ++DF+DLI+ T  L KK    
Sbjct: 150 KNDLLD--PEAFMQSASSPFEKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKD--- 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           + + +    +  ++L+DE QDT+  Q+E+  +L   +          + +  VGD  QSI
Sbjct: 205 SEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + ++  ++  +K           ++L  ++RST  IL+  + V    +N + 
Sbjct: 255 YGWRGANMENIMNFEQDYKKY------DVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW         Q + Q+ ++        +       A
Sbjct: 309 KN---------------------LW-------TDQGDGQKVTYYQAQSGDDE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I   I   +         K +    KD  +L R    +  +            I    
Sbjct: 334 HYIISKIQEEV---------KDKKRAYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  D   IKD+MA  + + +  D +S   ++ +P        + K+ T   E    
Sbjct: 381 VGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLITFADENHYN 440

Query: 467 ------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                 +            K       + + I  AQ  +       IL          + 
Sbjct: 441 ILDAMGHVAESSINTRAAKKLSDFGTKLRDAITYAQNGTVTGLTEKILTDFDYTDALRAE 500

Query: 521 FGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
              E    ++ LDEFL+ T R       E++  + L + ++E+               N+
Sbjct: 501 NTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFLAEVSLLSDQDDLDED--DNQ 558

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F  +                              
Sbjct: 559 VALMTLHAAKGLEFPVVFLIGMEDGLFPLQ------------------------------ 588

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688
                  +  +  EE  RL YVG+TRA  +L +    +       + +    + D + + 
Sbjct: 589 ----RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQ 644

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             + E  +K++ + + +  E     ++                      +    
Sbjct: 645 DLHKEENEKLQSSFTQSSFEKQTAPFARKAERARAEVYTAKKASGAIGAEKKGW 698


>gi|110799297|ref|YP_694494.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC
           13124]
 gi|122959147|sp|Q0TV46|ADDA_CLOP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|110673944|gb|ABG82931.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC
           13124]
          Length = 1271

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 124/656 (18%), Positives = 226/656 (34%), Gaps = 55/656 (8%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             F  L S         +     + +  +S  + E L+ +  E           KM+   
Sbjct: 279 ASFGRLKSVRKASVDDERALEKAKSLRDESKKIIENLRDNVFETSLEEAVLGMKKMYPLM 338

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEIN 178
                L    +  Y + K++  +LDF DL     ++L  +D       + +  +   +  
Sbjct: 339 KCLSGLVIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFKDKFE 398

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +L+DE QD++ IQ  ++  ++               +F VGD KQSIY F  A P+  L
Sbjct: 399 EVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANPELFL 451

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296
            +    ++           I L  +FRS  +I+  V+ +F    +     L  D    + 
Sbjct: 452 EKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEKEALN 507

Query: 297 HRSSRIGQVGTVQLWEQVVSQHD-------------SQCNPQQESWTSYFDSLPQESSAS 343
             +S           E +    +                N +        +      S  
Sbjct: 508 LGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKEYRDDDELGEEEEDLDSIQ 567

Query: 344 ILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           + AR I   I  ++  +            GK R I+ KDI++L+R  K+           
Sbjct: 568 LEARIIGKKIKELMNPEDGSHYMVFDKDLGKYRRIKYKDIVILLRATKNWA---ETFVDE 624

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              Y I V  +        + I+ ++AL   I +   D+  +  L+SP+F+F+ ++   +
Sbjct: 625 LGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSALRSPIFSFTSEEFADL 684

Query: 457 CTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                +              Y +  +     K ++ + Y+++    A +    +F   + 
Sbjct: 685 RLLNKDKYFFEIIKEVVDGIYDESISKELKGKCKYFLDYLNKWREKAAYMPIDEFIWFLY 744

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIK 562
                         G +    L        + E  S+  L   I+ +             
Sbjct: 745 SDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDMGSA 804

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +    N N VRIM++H +KGLE PVV L  TG Q       + + +  +L          
Sbjct: 805 KILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCIDVK 864

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
            + K        + K  +     E  R+LYV  TRA ++LII    +   +   N 
Sbjct: 865 KRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSCENW 920



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 19/187 (10%)

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
            E    +     +G I H ++Q I                    K    +E   ++    I
Sbjct: 1085 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1144

Query: 829  TRLLENPMMTTAM-----SCDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871
             +  ++ +    +         Y E+    +I               ++ + + G ID  
Sbjct: 1145 QKFFKSDLGQRMLNSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1204

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
               +    + +YKT +    E E     +  Q+++Y+  L      +     L      K
Sbjct: 1205 FEEEDGYVLLDYKTDYVKEGEEEDFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLEK 1264

Query: 932  VFIIPQN 938
               I + 
Sbjct: 1265 ELKISKE 1271


>gi|331702041|ref|YP_004399000.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129384|gb|AEB73937.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL
           B-30929]
          Length = 744

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 113/767 (14%), Positives = 234/767 (30%), Gaps = 138/767 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + + +  +                 + ++   L            
Sbjct: 30  GAGSGKTRVLTHRIAYIIEHNHIMPWRILAITFTNKAAREMRERVSKLLGEGGNDVWVST 89

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKI 110
           F  L                 F     + Q+ ++ + +   + D K+   +         
Sbjct: 90  FHALCVRILRRHIDLLGYNKAFTIADTSEQRTLVKRVLRDLNIDPKKFDPRAVLSAISNA 149

Query: 111 RDRFNTYKM--FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T K    ++  A   +   +   Y+   K+N  LDF+DLI+ T  L  +      
Sbjct: 150 KNDLLTPKAFKAQANSAFDQIVADVYDRYQAELKQNQSLDFDDLIMITIQLFDEHPD--- 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ ++ +L +            R +  VGD  QSIY 
Sbjct: 207 VLESYQDKFQYIHVDEYQDTNEAQYRLVNTLAK----------KNRNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  K+              +  L  ++RST  +L   + V +  +N    +
Sbjct: 257 WRGANMQNILDFKKDYP--------DAHVTLLEQNYRSTKTVLDAANSVIAHNDNRADKN 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              Q S+        +  + +  AR 
Sbjct: 309 ---------------------LW-------TENPKGDQISYY-------RGQTENDEARY 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +                    +L R    + +I            I      
Sbjct: 334 VVAKIQEEMAK---------PKRNYGSFAILYRTNAQSRVIEETL----LKSNIPYTMVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I+D ++    + +  D +SF  ++  P     +  I ++         ++ 
Sbjct: 381 GHKFYDRKEIRDALSYLTLLANPNDSMSFERVINEPKRGIGQASIERLRLFANDHQWSLL 440

Query: 468 EYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           E  +      + +    +      + +  +       S  +    IL          +  
Sbjct: 441 EAAKNVDLANEISTRAKNSIAEFEQTMRTISEKMAQLSITEITEEILDKSGYLSTLKASK 500

Query: 522 GNEVI---DVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIM 575
             E     + L+EF++ T +   E    +  Q L++ L        +     ++++V +M
Sbjct: 501 SLEAQTRLENLEEFISVTQKYDEENEGETGQQNLVNFLSDLALVSDQDSLEEDNSQVTLM 560

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE PVVFL+     +F                                     
Sbjct: 561 TLHAAKGLEFPVVFLMGMEEGLFPLS---------------------------------- 586

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV-----YDSFH 690
                +S  +E  RL YVG+TRA ++L I    +     +         V          
Sbjct: 587 RAAADESELQEERRLAYVGITRAKEKLYITNAYSRMLYGRRQNNPESRFVNEISPELIHS 646

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
           ++++  +  L+   ++    A   +   P       + +    +   
Sbjct: 647 DNQQQTESPLSTPFDRRTRRATATTYRRPGKVVESPKGSGADKLAWA 693


>gi|328957498|ref|YP_004374884.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4]
 gi|328673822|gb|AEB29868.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4]
          Length = 1268

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 112/624 (17%), Positives = 206/624 (33%), Gaps = 43/624 (6%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +   +     + +  +     ++L                            + +   
Sbjct: 302 TDEAIKETAEEMKGLRDQYKARFKELANDYFSASPQEQIDLMLSAAPLVEEMARVTQLFT 361

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI----RYKIDQEINHILIDEVQDTSL 190
             + + K +  +LDF DL   T  +L + +   WI          +   +++DE QD + 
Sbjct: 362 EAFRQRKDERNLLDFNDLEHLTLQILAQFNEENWIPTEASKHYRDKFKEVMVDEYQDINQ 421

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++R L  D        S    LF VGD KQSIYSF  A+P   L++    +     
Sbjct: 422 LQENILRWLAHD-------QSDQGNLFMVGDVKQSIYSFRLADPGLFLKKYEQYE----- 469

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             Q    I L  +FRS  ++L   + VF    +      D     +      G     + 
Sbjct: 470 HHQLGERIILAENFRSRGEVLQFTNLVFEQLMDKAVGQMDYDEAAKLVQGFTGFPELQKH 529

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR--RIAYTISNMIGTDTIFSNGK- 367
             +++       + + E   +   +               +   I  +I T     + + 
Sbjct: 530 QPELLIYEKGTNDTEDEEEETESVNWDMRIEDKTEGELLMVGQKIQELIQTQFPIYDKRA 589

Query: 368 --KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              R I  +DI++L   +K+      +   +     I +  ND         I  +M+L 
Sbjct: 590 KTTRPINYRDIVLLTPTKKN----NLVLMEMFKRLAIPLQVNDTQNYFQTTEITIMMSLL 645

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY------------EYIQKF 473
           + I +   D+    +L+SPL    E+++  I   +   +               E   +F
Sbjct: 646 KVIDNPYQDIPLAAVLRSPLVGLDENELASIRISQKTGDYFDALKTFYQSYPGVEKASRF 705

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEF 532
            +    K    +  +++   IA+          I               G +    L   
Sbjct: 706 TSNLYGKIDMFLTRLNKWREIARRDHLVALIWTIYDDTGFLDYVGGMSSGKQRKANLHAL 765

Query: 533 LNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
                  E+ S+  L + +  +E+            A S + N VR+MT+H +KGLE PV
Sbjct: 766 YERASSYEKTSFKGLFQFVRFIEKMQEKDKDLAEPTAISEDENAVRVMTIHASKGLEFPV 825

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VF++D   +       K                   + +  +     L    K     E 
Sbjct: 826 VFVLDLTKKFNLQDIKKSYIFNEQYGVGTDFKDLDRRIRYPSLPEIALKVEKKTKLLSEE 885

Query: 648 NRLLYVGMTRASDQLIICKHSNTS 671
            R LYV +TRA ++L +       
Sbjct: 886 MRKLYVALTRAEEKLFLVGSYKDE 909



 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 17/204 (8%)

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF--TLPEHKRKNFITS 807
            DIN+P   N    +T  +    + L+       G   H ++Q I   T P  +    + +
Sbjct: 1064 DINQPRNRNRYVEETLDRPLFMAELTAPSNAEIGTATHSVMQAIDLSTAPTKETLETLIA 1123

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA--MSCDSYSEVSVSGKINCP------- 858
               KN  L      K  +  +       +       S D + E   S  +          
Sbjct: 1124 SLIKNGVLKEDVASKVNVEQVEEFFTTVLGKMIIDFSKDVHREEPFSLLLEAEKLFTDMN 1183

Query: 859  ---KKDIIISGRIDQISISQQNIFIFEYKTHHHV---PQEIEHIPYTHIAQLSIYEKILK 912
               +  I+I G ID     + +I +F+YKT        Q  E +   +  Q+++Y   L+
Sbjct: 1184 GDAEDKILIHGIIDGYIELEDHIVLFDYKTDRVSHYGSQSGEKMLEKYKGQMNLYRSALE 1243

Query: 913  DSYPNKSLVCLLIYVSEPKVFIIP 936
                 K     L  +   ++  +P
Sbjct: 1244 SILDKKVTETYLCLLDTGEIISVP 1267


>gi|74316051|ref|YP_313791.1| DNA helicase/exodeoxyribonuclease V subunit A [Thiobacillus
            denitrificans ATCC 25259]
 gi|74055546|gb|AAZ95986.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
            25259]
          Length = 1089

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 147/948 (15%), Positives = 294/948 (31%), Gaps = 111/948 (11%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E         W  P  +       +  ++E G+ T  KKA  +++A     + +    L
Sbjct: 224  SELDADPVAAFWADPALRAR--VGRLGEALEKGSETERKKALAIREAIDAADVVQ----L 277

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT----YKMFKSTLA 125
                L +                     +   +         +         ++ +    
Sbjct: 278  RGLILKKDGERLAKKANASTLAALGAEADTFLRDYASVEDALEALARHQTDLRIRELNRH 337

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             L L   L   Y++AK++  V+DF D       LL   + +  +  K+D    H+L+DE 
Sbjct: 338  GLLLGHALFTAYQDAKRRQGVIDFADAEWLGCQLLMSEEYAPALAMKLDARYRHLLLDEF 397

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT+ +QW+ + +   +   G     S  T+F VGD KQ+IY F   E +          
Sbjct: 398  QDTNPLQWQALSTWLLEARGG----GSEMTVFMVGDPKQAIYRFRRGEARVFDAATDFLH 453

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      +     ++ R    ++  ++ VF+                RH      + 
Sbjct: 454  SHFEA-----ARFSTDMTRRLAPPVVAALNPVFAGVTGF--------AEHRHAPQNAERP 500

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS-NMIGTDTIFS 364
            G +++    V + +        +  +   +  ++      AR  A T+   ++G   +  
Sbjct: 501  GALRVLPLQVEKTEPVTAGGLRNPLTTARTEAEDRVVDEEARVFARTLRDEILGRWGVID 560

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
             G  R    +D++ LV+KR    +            +I  + + R  L + L  +DL+AL
Sbjct: 561  KGTSRAAAPRDVIALVKKRTHLHVYERELEA----ARIPYITSRRGGLLNALEARDLVAL 616

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---QRHETETVYEYIQKFANCGISKF 481
               +L    DL    +LKSP+F+ S+DD+  +                    A    ++ 
Sbjct: 617  IECLLLPHADLKLAHVLKSPIFDCSDDDLLSVFAPQPDAGARGWERLLALAEAPHATAEA 676

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTL 537
                + +            HD    I        ++ +        +V   L  F+   L
Sbjct: 677  ARAARLLPRWRERCGTLPVHDLLDHIYCEGDVEARYAAAVPPARRPQVEANLRAFMQLAL 736

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSA-----NHNEVRIMTVHTAKGLESPVVFLVD 592
              +   Y +L   + EL         +          + VR++T+H AKGLE+P+V+L+ 
Sbjct: 737  TQDAGRYPTLAGFVRELASLIDDADASPDEGLAADGADAVRLLTIHGAKGLEAPIVWLLG 796

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +    +    +   P     P       +   R           K   + E + LLY
Sbjct: 797  GSDRP-HGESYGVLAPWPPDAPAPLHFSLFGKQDERGAGRQGSFDEEKTLAEREADNLLY 855

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V +TRA   LI+           + +  W   V  ++H  +    + +            
Sbjct: 856  VALTRAEQALIVSG--------DAGKNAWVQRVEAAWHALDLPADLPVAAEAGTHNIELR 907

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                  P    +            +     L                             
Sbjct: 908  TPIEAPPIGRRVASPGHNAAAASGEFFHACLEVHAPPGAPRKLAEL-------------- 953

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                         +H  L+        + +    +   +                     
Sbjct: 954  ------------AMHLGLER----EHARIEAEARALLAR--------------------- 976

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH-HHVPQ 891
              P +        Y        +      +    R D++   +  +++ +YK        
Sbjct: 977  --PELAHLFDPARYRRAYNELALLDRDGRLQ---RADRVVEGEDAVWLVDYKMGEQSRLL 1031

Query: 892  EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
                +   H AQL+ Y  +L   YP+K +  +L+ +++ ++  +  + 
Sbjct: 1032 SDTALAEAHRAQLAGYRSLLAALYPHKPVHAVLL-LADGRLVEVDTDV 1078


>gi|168576188|ref|ZP_02722082.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae MLV-016]
 gi|183577923|gb|EDT98451.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae MLV-016]
          Length = 763

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 103/592 (17%), Positives = 192/592 (32%), Gaps = 122/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAQCYTAYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   K 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPK- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL V ++V    +N +  +                   
Sbjct: 272 -------AKVVLLEENYRSTKTILQVANEVIKNNKNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D L +       A  +A TI  +  +        
Sbjct: 306 --LW-------TQNADGEQIVYYRADDELDE-------AVFVARTIDELSRSQNFLHK-- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL R    +  I            I               I+D++A    
Sbjct: 348 -------DFAVLYRTNAQSRTIEEAL----LKSNILYTMVGGTKFYSRKEIRDIIAYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANLSDNISFERIINEPKRGIGLGTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       S  +    +L          ++   E    ++ ++EFL+ T  
Sbjct: 457 WDFANMMLDLREQLDHLSITELVESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T   +   +   V +MT+H AKGLE PVVFL
Sbjct: 517 FDDTTDVTEEETGLDKLSRFLNDLALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFL 574

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     VF                                              EE  RL
Sbjct: 575 IGMEENVFPLS----------------------------------RATEDPDELEEERRL 600

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 601 AYVGITRAEKILYLTNANSRLLFGRTNYNRPTRFINEISSDLLEYQGLARPA 652


>gi|29346067|ref|NP_809570.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29337961|gb|AAO75764.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 788

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 103/683 (15%), Positives = 207/683 (30%), Gaps = 124/683 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y E  ++   +DF+DL++ T  L +       +  +  ++  ++L+D
Sbjct: 170 AAKVPAVREIYTRYWERCRQAGAMDFDDLLVYTYILFRDFPE---VLARYREQFRYVLVD 226

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   ++
Sbjct: 227 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKV 276

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E        S            
Sbjct: 277 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKEVFS------------ 316

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +A  I+ +       
Sbjct: 317 ---------------EKERGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 349

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       +               IKD++A
Sbjct: 350 -----HSYGYADFAILYRTNAQSRVFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 400

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI +       +++  + +          
Sbjct: 401 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATENGVSLWAALCEPLSYGLNINK 460

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +K Q   + I   +      S ++  T I+               E     + ++E 
Sbjct: 461 GTHTKLQGFRELIEGFMTDQVDKSAYEIGTDIIRRSGIINDVCQDTSPENLSRKENIEEL 520

Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N         + E N   SL + +SE+           + +  ++ +MTVH+AKGLE  
Sbjct: 521 VNGMNDFCALRQEEGNPNISLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 579

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 580 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 605

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   I          K    +    + D   N  R+      +    
Sbjct: 606 ERRLFYVAITRAEEHCYISFAKTRFRYGKMEFGSPSRFLRDIDVNYLRLPHEAGVSRSVD 665

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           +    +                T        +   K              +  S +    
Sbjct: 666 EGAGRFRREIEGGFTRAASPTRTPYGTKFSDRERPKAQVIAPTVPKNLKKV--SAVSGSS 723

Query: 767 KTNLESLLSDNQTFNRGLII-HK 788
             +  +  +       G +I H+
Sbjct: 724 IRSASAGSASVTGVQAGQMIEHE 746


>gi|253568515|ref|ZP_04845926.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6]
 gi|251842588|gb|EES70668.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6]
          Length = 788

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 103/683 (15%), Positives = 207/683 (30%), Gaps = 124/683 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y E  ++   +DF+DL++ T  L +       +  +  ++  ++L+D
Sbjct: 170 AAKVPAVREIYTRYWERCRQAGAMDFDDLLVYTYILFRDFPE---VLARYREQFRYVLVD 226

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   ++
Sbjct: 227 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKV 276

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E        S            
Sbjct: 277 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKEVFS------------ 316

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +A  I+ +       
Sbjct: 317 ---------------EKERGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 349

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       +               IKD++A
Sbjct: 350 -----HSYGYADFAILYRTNAQSRVFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 400

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI +       +++  + +          
Sbjct: 401 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATENGVSLWAALCEPLSYGLNINK 460

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +K Q   + I   +      S ++  T I+               E     + ++E 
Sbjct: 461 GTHTKLQGFRELIEGFMTDQVDKSAYEIGTDIIRRSGIINDVCQDTSPENLSRKENIEEL 520

Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N         + E N   SL + +SE+           + +  ++ +MTVH+AKGLE  
Sbjct: 521 VNGMNDFCALRQEEGNPNISLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 579

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 580 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 605

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   I          K    +    + D   N  R+      +    
Sbjct: 606 ERRLFYVAITRAEEHCYISFAKTRFRYGKMEFGSPSRFLRDIDVNYLRLPHEAGVSRSVD 665

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           +    +                T        +   K              +  S +    
Sbjct: 666 EGAGRFRREIEGGFTRAASPTRTPYGTKFSDRERPKAQVIAPTVPKNLKKV--SAVSGSS 723

Query: 767 KTNLESLLSDNQTFNRGLII-HK 788
             +  +  +       G +I H+
Sbjct: 724 IRSASAGSASVTGVQAGQMIEHE 746


>gi|169824265|ref|YP_001691876.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328]
 gi|167831070|dbj|BAG07986.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328]
          Length = 725

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 99/577 (17%), Positives = 178/577 (30%), Gaps = 122/577 (21%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                             ++  T    L   YE   K+   LDF+DLI+ TN L ++   
Sbjct: 145 RLKNAGATEKNIDKEDFDISLSTFTMELFQKYEHKLKRYNSLDFDDLIVKTNLLFEENPD 204

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +R K      ++ +DE QDT+  Q+++I++L           S    +  VGD  QS
Sbjct: 205 ---LREKYSDRFKYVFVDEYQDTNDTQYKLIKNLV----------SKNDNICCVGDSDQS 251

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY + GA  + +   ++  +           +I L  ++RST  IL + + V       +
Sbjct: 252 IYGWRGANIQNIQNFEKDFKN--------AKVILLEQNYRSTQPILDLANTVIKNNSLRK 303

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             +                     LW    ++++      +  ++   +           
Sbjct: 304 DKN---------------------LW---TAKNEGDMPIYRRMYSDIDE----------- 328

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A ++   I             + R    +++ +L R    + L       L     I   
Sbjct: 329 ADQVVQWIEQ----------ERYRENPYEEMAILYRTNAQSRLFEERLNRL----GIPNR 374

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                   D   IKD ++  R + +  D+++   ++  P     +  + K+         
Sbjct: 375 VVGGLKFYDRKEIKDCVSYLRIVENLNDNMALNRIINEPKRGIGKTTMDKLLQCSQNRSI 434

Query: 466 VYEYI------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518
                        F+N    K Q     I          +  +    IL     R     
Sbjct: 435 SMMQYIIDTDLPDFSNATAKKLQEFYYLIKSFPK--DQMNVAELMEYILDKTGYRANLEK 492

Query: 519 --SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIM 575
             +R     ++ +DE+++   +  Q++    + L   LE             N   V +M
Sbjct: 493 STNRDDKTRLENIDEYVSSLYQFVQDNPD--KNLREYLETSSLMTDLDKTDDNTKGVSMM 550

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE  VVF           +                                  
Sbjct: 551 TIHAAKGLEFDVVFFTGLEEGTIPSRV--------------------------------- 577

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                    EE  RL YV +TRA  +L I    +   
Sbjct: 578 -----DEDVEEERRLCYVAITRARKKLYITSVQSRRR 609


>gi|255526102|ref|ZP_05393024.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296185823|ref|ZP_06854230.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|255510218|gb|EET86536.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296049651|gb|EFG89078.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
          Length = 1112

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 143/887 (16%), Positives = 318/887 (35%), Gaps = 112/887 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            L +A  +   Y   K K  +LD++DL   T  +L        +R +       +L+DE Q
Sbjct: 208  LAVALKIEEAYLNYKLKKDLLDYDDLETMTLKVLS----IKNLRERYRNRYKTLLVDEFQ 263

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT+ IQ  ++  +  D     N     + +F VGD KQSIY F G +     +  +  + 
Sbjct: 264  DTNGIQKNILYKIAAD----DNGRLINKKIFIVGDFKQSIYGFRGTDYTIFKQVSKDIEN 319

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVF----------SIPENAQGLSEDSTTTIR 296
                       + L   +RS ++I+  ++ +F            P++ +   +       
Sbjct: 320  E----------VSLSTCYRSKSEIIKGINSIFNELIDGYQPLKCPKDEEIKEKRIKLLTY 369

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISN 355
             +  R       ++   +  +   +    Q++  +  DS        +     +   I  
Sbjct: 370  EKIRRTSDNVYTEVKNMLQGKESKKFENIQQALKALKDSNKDITVKKNKEGMAVIKAIKI 429

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            +            + ++ KDI +LVR R   P I    +       +             
Sbjct: 430  LRD----------KNLEFKDICILVRSRSVIPDIEEELK----RRNVPYCIIGGVGFYQK 475

Query: 416  LAIKDLMALGRFIL-------SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETV 466
              + +++ L + I+       + E++ +F+ +L+  LF  S+D + K+  ++ E+  E +
Sbjct: 476  AEVDEILNLYKVIVRGFSGEFTYEENKNFIQVLRGSLFEISDDTLLKMNIEKEESSLENL 535

Query: 467  YEYIQKFAN-CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRFGNE 524
            YE ++ + +     K  + +  + +L  + +  S       I+      +       G +
Sbjct: 536  YEALKVYEDGMHSEKLLNTVTILEKLAGLKEKLSVVQIIQAIIKECNVFEIMLCQDNGLQ 595

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHT 579
                +++ L    + ++    +L++ ++ +                  +   V+IMT+H 
Sbjct: 596  KFRNIEKLLQEAEKFDREQLFTLEQFVNYINLLDEENGDDSEAALDTEDSEAVKIMTIHQ 655

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            +KGLE   V +    S + S     K +++ + N        +   +       + +   
Sbjct: 656  SKGLEFKGVIIPKIHSDLLSMSKKDKPNLVYNKNSIILSKD-LENVELTTPEYEEYLNSK 714

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICK--------HSNTSNEKKSNQRTWYDMVYDSFH- 690
             +   EE  RLLYV MTRA D +I+                +K     ++   +  SF  
Sbjct: 715  LEKEIEETERLLYVAMTRAEDYVILTGGDDGKDPTPIKDETDKIKELNSFLKQLKYSFTV 774

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI--------KQLMDEQKIPKK 742
             +   + I+  NS + ++    +      +    + +E++           +   +  K 
Sbjct: 775  GNADKELIEFINSDDIEDLEVIKRKISKVQIDKEKLQESLNYKGNIKNYASVSATRYMKY 834

Query: 743  LFSPIKNDINEPYILNPST-IDTKGKTNLESLLSDNQTF--------------------- 780
            L  P +  +     +N    I+ + K ++   L+++                        
Sbjct: 835  LKCPRRFYLESVLNINGKDYIEKENKHDIAEFLAEDTAKMEVEDIEQKTEYKLSQSISAS 894

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT--RLLENPMMT 838
              G  +H +++ +        K+ I +   K    +       L   +   +LLE    +
Sbjct: 895  TIGTAVHSIIENLNNEVSIDEKDIIKAAAEKYELNYVDGIENKLKHYVEGYKLLEKEKSS 954

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI--SISQQNI--FIFEYKTHHH-VPQEI 893
                   ++E+  S       +   ISG ID++            I +YKT+     ++I
Sbjct: 955  YGSLVSKFNELDYSLS-QMEHRKTSISGFIDRLEIFQKDGKYTAVITDYKTNFIYGNRKI 1013

Query: 894  EHIPYTHIAQLSIYEKILKDS-----YPNKSLVCLLIYVSEPKVFII 935
            + +   +  Q+ +Y K +K+      +  + ++  L ++  P+   I
Sbjct: 1014 KELTAAYELQMLLYGKAVKELLYVKGFKVEEIILELYFLDVPERVQI 1060


>gi|289178716|gb|ADC85962.1| PcrA [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 1037

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 105/653 (16%), Positives = 209/653 (32%), Gaps = 117/653 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TYKMFKSTLASLTLAKYLNAHYE 138
           K    + I  +  D K +L  +     +    F     +  F        +   + A Y+
Sbjct: 274 KRFTPRSILARISDYKNQLTDASTALAQYAPDFKPGMRHYSFGQIGDPEPVYAVVYAEYQ 333

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                   +DF+DLI+ T +LL+ +     +      +  +IL+DE QDT+  Q+ ++R 
Sbjct: 334 YRLALANAVDFDDLIVRTVELLRTQPH---VAEYYRHKFRYILVDEYQDTNHAQYVLVRE 390

Query: 199 LTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           L         D    +   S P  +  VGD  QSIY+F GA+ + +   ++         
Sbjct: 391 LAGVDAHEPSDPMATEAGKSGPAWVTVVGDSDQSIYAFRGADIRNIQDFEKDFP------ 444

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   + V +     +                        LW
Sbjct: 445 --DARTIMLEQNYRSTQTILDAANAVIAHNSARKPKK---------------------LW 481

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +          +   + +         +A + A  IA  I ++            + +
Sbjct: 482 TAL------GEGDKIIGYAA--------DTAQLEAHWIAQQILHLHEE---------KGL 518

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ ++ R    +  +            I           +   +KD +A  + I++ 
Sbjct: 519 PYSDMAIMYRANAQSRSLEEGL----IQAHIPYQLIGGTKFYERREVKDAIAYLQAIVNP 574

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN------CGISKFQHV 484
            DD++   +L  P          ++        +T +  I++  +         +  +  
Sbjct: 575 ADDINMRRILNVPKRGLGTRAESQLTLFANEHNQTFWWAIEQLEDIEGMSARTANAVRAF 634

Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
            + +  L   A      P +    +L      +        +    ++ L +  +     
Sbjct: 635 RELMTSLRTFAGEHDSKPSEIVAQVLEQSHMLELLRKSEDPQDESRVENLSQLQSVAAEF 694

Query: 540 EQNSYS-SLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           EQN+   +L   +        + +      +  +V +MT+HTAKGLE P+VFL       
Sbjct: 695 EQNTPDTTLAGFLETTALVADSDQLPGEGHDSGKVTLMTLHTAKGLEYPIVFLTGMEQGT 754

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H                                             E  RL YVG+TR
Sbjct: 755 FPHS----------------------------------RAMENMDELSEERRLAYVGITR 780

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           A  +L + + +  +   + ++      + +   +    K+ +      +  W 
Sbjct: 781 AKRRLYLTRAAVRAQWGRQSEMMPSQFLDEIPDSLIDWKRREAGMERMRSGWR 833


>gi|322383647|ref|ZP_08057398.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae
            subsp. larvae B-3650]
 gi|321151859|gb|EFX44802.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae
            subsp. larvae B-3650]
          Length = 1350

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 128/830 (15%), Positives = 268/830 (32%), Gaps = 89/830 (10%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQ 54
             R G  L+   + I  D+        + + +    +   G P        + L+   TL 
Sbjct: 242  RREGPDLSLWQQSILHDVLLELKGAKNLLQQAKLWTEAPGGPLPYLATLDSDLELINTLL 301

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            +A++    E  +    +    +    + + + +E+ +     + ++K +     +     
Sbjct: 302  EAAEN-SWEAAYRAFQTAVFGKLKPCRGDDLDKELQEAVKQARNEVKDAVFRIKEEIFTR 360

Query: 115  -------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--- 164
                      +        + L       Y+++K+   ++DF DL      +L+  +   
Sbjct: 361  TQEEYKDELKRTAPVLHHLVRLVIDFAERYQQSKEDKGLVDFADLEHYCLAILRSEESTP 420

Query: 165  ---VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
               + +       ++   +L+DE QDT+ +Q  ++  ++++          P   F VGD
Sbjct: 421  ERMIPSSAALDYQEQFAEVLLDEYQDTNRVQESIVSLISKEA---------PGNRFMVGD 471

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             KQSIY F  AEP   L + +         G     ++L  +FRS   ++  V+ +F   
Sbjct: 472  VKQSIYRFRLAEPGLFLSKYKSYTTSGEGEG---KRVDLARNFRSRRQVVDAVNFLFRQI 528

Query: 282  --ENAQGLSEDSTTTIRHRSSRIGQVG--TVQLWEQVVSQHDSQCNPQQESWTSYFD--- 334
              E+   ++ D    +   ++        +V++     S  +      +       +   
Sbjct: 529  MQESVGEIAYDIRAELVTGANYPETGQDLSVEMMLVDRSAEEQDEFTAKGFGEDEAEPEM 588

Query: 335  ----------SLPQESSASILARRIAYTISNMIGTDT--------IFSNGKKRVIQAKDI 376
                         +  +A + AR IA  I  ++GT+             G+ R    +DI
Sbjct: 589  ASEPAASLEFEAAELETAQLEARAIALKIRRLLGTEEGVRPFQVFDKRTGELRPATFRDI 648

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            ++L+R  +    +            I    +          ++ +++L + I +   D+ 
Sbjct: 649  VILLRATQQWAPV---LMEELKQQGIPAYADLNTGYFSATEVEIMLSLLKTIDNPAQDIP 705

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI---------------------QKFAN 475
            F  +L+SP+   + DD+ +I                                     F  
Sbjct: 706  FAAVLRSPVVQLNADDLAQIRIAGPGLSFYDAAYLYANGQTAEGALSQAIQPAVSWSFKP 765

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLN 534
                K    +  +      A+  +  D    I               G +    L    +
Sbjct: 766  EVQQKLLLFLDRLESWRSEARQGALADLIWNIYRETGFYDYVGGMPGGLQRQANLRALYD 825

Query: 535  FTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
               + E  S   L   +  +E+           R+     + VRIM++H +KGLE PVVF
Sbjct: 826  RARQYESTSLRGLFRFLRFVERMKETGGDLGTARSLGEQEDVVRIMSIHKSKGLEFPVVF 885

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +                 I   L   P       +       +  + + +K     E  R
Sbjct: 886  VAGLAKIFNQRDTSGSFLIHKELGFGPKYLDPDLRVSYPTLPMLAIRRRMKLELLAEEMR 945

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            +LYV +TRA ++L +     ++++  S+   +  +   S  +DE  +     + I     
Sbjct: 946  VLYVALTRAREKLFLLGTVKSADKLLSSWSRYLGLGTWSLPDDEVARARSYLDWIGPSLI 1005

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
               +             + +     D       + SP     N    L  
Sbjct: 1006 RHRDAEGWRKRIGLEGAKLSPSLAGDPSVWSFTILSPSLLSQNLAEELKA 1055



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 70/208 (33%), Gaps = 19/208 (9%)

Query: 747  IKNDINEPYILNPSTID-----TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
            ++  + +   ++P  +      +  K              RG ++H ++Q +        
Sbjct: 1142 MRPQVRKDRKMSPQAVPGTIQTSLKKRPRFMEEKKPTPAERGSVVHAVMQNMPLHETPTL 1201

Query: 802  KNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCP 858
             +   +     +   L  A+        I +  +  +    +  D    EV  S  +  P
Sbjct: 1202 SSVRQTLDKMLRLELLTTAQCETVPEEEILQFFQTSVGKRMVKADWVKREVPFSLGLPAP 1261

Query: 859  K-----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            +             ++I G ID +   ++ + + +YKT      ++E +   +  QL +Y
Sbjct: 1262 EVYPDIGYNGARDIVLIQGIIDCLFEDEEGLVMLDYKTDAVWQNDLEKLKDRYRLQLQLY 1321

Query: 908  EKILKDSYPNKSLVCLLIYVSEPKVFII 935
             + +++ +        L +     +  +
Sbjct: 1322 ARAVEEIWKRAPRQKYLYFFDGAHIVEL 1349


>gi|325262187|ref|ZP_08128925.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5]
 gi|324033641|gb|EGB94918.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5]
          Length = 741

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 114/729 (15%), Positives = 219/729 (30%), Gaps = 136/729 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L            
Sbjct: 27  GAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEMRERVDNLVGFGSESIWVST 86

Query: 66  FS---------LLSSFFLTQKFTPQKNIITQEINKKSPDLKE------KLKKSQDEFIKI 110
           F           +        FT       + + K    L +      K +         
Sbjct: 87  FHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLMKDVCKLIDIDTKVYKERSLLGAISSA 146

Query: 111 RDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           +D   + + ++   A          +   YE+  + N  LDF+DL++ T  L + +    
Sbjct: 147 KDELISPEEYELNTAGDYGKQKIAKVYREYEKQLRANNALDFDDLLVKTVQLFQTQPD-- 204

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     +   +I++DE QDT+ +Q++ +  L   +          + L  VGD+ QSIY
Sbjct: 205 -VLENYQERFRYIMVDEYQDTNTVQFKFVSLLAGKY----------KNLCVVGDDDQSIY 253

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA  K +L  ++  Q           +I+L  ++RST++IL   + V S     +  
Sbjct: 254 KFRGANIKNILNFEQEFQ--------DARVIKLEQNYRSTSNILNAANAVISNNCGRKDK 305

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW             ++     +  +  +       A 
Sbjct: 306 T---------------------LW-------TDNGEGEKIQLRQFDTAYDE-------AD 330

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            IA  I N     +             D  +L R    + L             I     
Sbjct: 331 FIAEDIRNHTREGS----------TYNDHAILYRTNAQSRLFEERFVA----SNIPYKIV 376

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETV 466
                     IKDL++  + I + +DDL+   ++  P        I ++           
Sbjct: 377 GGVNFYARREIKDLLSYLKTIDNGKDDLAVRRIINVPKRGIGLTTINRVQESALEREIGF 436

Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           YE ++            +K    +  I      AQ  S  D    I+      +   +  
Sbjct: 437 YEALRGLDLIPNIGRSAAKLDSFVALIEYFKTRAQEDSISDLMKEIIEKTGYVENLEAED 496

Query: 522 GNEVI---DVLDEFLNFTLRNE-----QNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             +     + +DE L+     E     Q+   +L   + E+         +   N + V 
Sbjct: 497 KEDAQARIENIDELLSKIAAFEESCLDQDEKPTLSGFLEEVALVADID--SLDENQDYVV 554

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE P V+L      +F          +  L ++  +               
Sbjct: 555 LMTLHSAKGLEFPHVYLAGMEDGLFPSYMTITSDDIEELEEERRL--------------- 599

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                             YVG+TRA  +L +          ++        + +   +  
Sbjct: 600 -----------------CYVGITRAEKELTVSCARRRMIRGETQYNKMSRFLKEIPKDLL 642

Query: 694 RVKKIKLTN 702
                    
Sbjct: 643 ETGADFEEA 651


>gi|149927015|ref|ZP_01915273.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105]
 gi|149824236|gb|EDM83456.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105]
          Length = 1078

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 152/903 (16%), Positives = 314/903 (34%), Gaps = 106/903 (11%)

Query: 1    LKNRFGLSLNES--YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
            L   F +   E    E++    +   + Q +     +  + + G+   ++KA  L    +
Sbjct: 211  LNRVFEIGEGEQWPVEVLNNRHFLEQWQQAARWL-ALGTAKQQGHAVDIEKA--LTALRE 267

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                 + F  L +  LT K  P KN       Q+      D    L+    +  +     
Sbjct: 268  GAHAADVFEQLKAVCLTAKNEPSKNFFKMTAGQKTAVDETDYVRTLEGLALQTAQALQLE 327

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  ++T A   L + L   Y+  K +  + DF+DL      +L   +  A+++ K+D
Sbjct: 328  KDQLDMQATAALAQLIEPLFDTYKSIKLEQGLCDFDDLEATALRMLMNDEQRAYMQQKLD 387

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
              + H+L+DE QDT+ +QW +++   +D+           ++F VGD KQSIY F  AE 
Sbjct: 388  TRVRHLLVDEFQDTNPVQWNILKLWLQDYSG-----DDKPSVFLVGDPKQSIYRFRRAEA 442

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
            +     +    +           +E   + R    ++ VV+ VF   +            
Sbjct: 443  RLFNHARAWLVEHF-----AAKTLESDSTRRCARSVVDVVNAVFEPGQTRG--------Q 489

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
               R+       +V   + +                     L +E      A+R+  T+ 
Sbjct: 490  TAFRAHTSLAGESVSTLKGLNIYPK----------------LLKEDEGPDEAQRVVQTLQ 533

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
              +   +I            +++VLVR  K    +    R       ++    D+     
Sbjct: 534  QWLANGSIQ--------NLSEVMVLVRAHKSGVPLMAALRE----AGLAYTIKDKGERYT 581

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--RHETETVYEYIQK 472
                 D +AL  F+     +L  + +L+ PL   S      +      ++T TV+  ++ 
Sbjct: 582  SQVWGDTIALLGFLNDPHANLHLLQLLRCPLIGLSSAQFQSLIQAGKMNQTATVWGTLEL 641

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDV 528
             A    + +  +   + E + +A+     +  + ++   K  +++++    R    + + 
Sbjct: 642  LAGQCKAPWTALHAQLSEWLRMARALPLFETLSKVVADTKASEKYLNSASPRQRVMMAEH 701

Query: 529  LDEFLNFTLRNEQNSYSSLQELISE---LEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             D    + L   +  +  LQ+   E   L+ Y  +     + N + +RIMTVH+AKGLE+
Sbjct: 702  WDWLKAWALGLNKGRFPGLQQAFDEAVKLQTYASSDSEGAANNPDVLRIMTVHSAKGLEA 761

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS-DLIKHLKKSTQ 644
              V+L D  S          + I  +L +     + +  +    +       +  +++  
Sbjct: 762  NHVWLFDANSSPKPGGSNAGLLIDWALGESHPKSVTVMGNLGNPSPGRAAAQQIEQQAYA 821

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            +E + LLYV +TRA   + +         K                     +++    + 
Sbjct: 822  DEEDHLLYVALTRARHSIHLSGSEKRGASKG------------------WYERLLPFATQ 863

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                W   + +T  P       +  +  L D   +  +   P+ N ++ P       + +
Sbjct: 864  VHSTWPMPQGATQWPG------QAELAGLFDPPALWVRPQFPVLNALSAPVGNVVPRLAS 917

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE---HKRKNFITSYCTKNAKLWPAKEY 821
                             +G   H  L+ +  L E         +   C    +     E 
Sbjct: 918  PE-------------LRKGTAWHAALEWVDELAETPFDAWWAKVAVRCEAVFRPLRDDEL 964

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
            +++  +   L+    +   +     +  SV  ++     D   S R D++        + 
Sbjct: 965  QHVEQACRLLVNKGDLQPWLQGAVANNHSVFNELEWVLGDGR-SLRADRVLELPDRFLVL 1023

Query: 882  EYK 884
            +YK
Sbjct: 1024 DYK 1026


>gi|189501505|ref|YP_001957222.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2]
 gi|189496946|gb|ACE05493.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2]
          Length = 757

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 93/580 (16%), Positives = 191/580 (32%), Gaps = 113/580 (19%)

Query: 96  LKEKLKKSQDEFIKIRDRFNT-YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           +  ++  +++  I  ++  N          A       +   Y +   +   +DF+D+++
Sbjct: 140 VLSRISSAKNRLITAQEYINNPIYQQDDEEAMKPKVGEIYVQYAKRCLQAGAMDFDDILL 199

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
           NT  LL +      I YK  +   +ILIDE QDT+L Q+ +++ L              +
Sbjct: 200 NTYLLLNQH---LDILYKYQERFQYILIDEFQDTNLAQYAIVKDLAG----------IHK 246

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIY+F GA  + +L  ++             +II+L  ++RST +I+   
Sbjct: 247 NICVVGDDAQSIYAFRGANIRNILNFEKDYPN--------LTIIKLEQNYRSTQNIVEAA 298

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +    +            ++       + G V    +  +  +               
Sbjct: 299 NGIIRNNQLQ----------LKKNVWTANEKGEVIGLIRATTDAEEG------------- 335

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                       R +A +I  +           +  ++ +D  +L R    +  I    R
Sbjct: 336 ------------RLVAASIFEI---------KMQNQLRNEDFAILYRTNSQSRAIEEALR 374

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  +               +KDL+A  RFI++  D+ +   ++  P       +I 
Sbjct: 375 ----KINLPYRMLGGTSFYQRKEVKDLLAYLRFIVNHNDEEALKRIINEPKRGIGPSNIE 430

Query: 455 KI-CTQRHETETVYEYIQK----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
           K+          ++E +       +       +     I  +         ++  + I  
Sbjct: 431 KMVVAASDHGIPLWEVMCNAKNFLSGRVAEAVEEFAHMIQAMALDLTKKDAYEIASEIAK 490

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                +        E     + + E L+       N       L + L+         + 
Sbjct: 491 RSGLLKSLYEDKTVEGLARYENVQELLSGIKAFTANPEQVDTSLATFLQDVALATNNENE 550

Query: 567 AN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            +  +++ +MT+H AKGLE   V++V     +F    +                      
Sbjct: 551 EDGEDKISLMTIHAAKGLEFKYVYIVGIEEDLFPSSMMLGS------------------- 591

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                          +   EE  RL YV +TRA  ++ + 
Sbjct: 592 ---------------REDLEEERRLFYVALTRAQKKVFLS 616


>gi|304317509|ref|YP_003852654.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779011|gb|ADL69570.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 716

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 104/554 (18%), Positives = 184/554 (33%), Gaps = 113/554 (20%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             LDF+D+II T +L KK +    I      +  +I++DE QDT+  Q+E +  L + + 
Sbjct: 183 NALDFDDIIIKTIELFKKDEG---ILRYYQDKFRYIMVDEYQDTNRPQYEFVNLLAKRY- 238

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                    R L  VGD+ QSIY + GA+ K +L  ++           +  +I+L  ++
Sbjct: 239 ---------RNLCVVGDDDQSIYGWRGADIKNILDFEKDYP--------EAKVIKLEQNY 281

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST  IL   + V       +                       QLW           + 
Sbjct: 282 RSTQIILDAANNVIDNNIKRKKK---------------------QLW-------TDNKDG 313

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           ++       +   +       A  I   I ++I              +  D  +L R   
Sbjct: 314 EKIIVCEVQNEREE-------ANFIIDRIKDLIANGR----------KYSDFAILYRTNA 356

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            + +             I           D   IKD++A  R +++  DD+S   ++  P
Sbjct: 357 QSRIFEEA----CMMNDIPYKLVGALRFYDRKEIKDIIAYLRILVNPYDDVSLKRIINVP 412

Query: 445 LFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSPH 501
                E  +  +    R    ++Y  I      G ++    +   +I +LI+   F +  
Sbjct: 413 KRGIGESTVSALEQYAREHDTSMYFAIPDVELKGRARKVLDNFKNFIDDLINQLDFMNII 472

Query: 502 DFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQY 557
           +    IL       +  +    E    I+ ++EF+       E +   SL+  +S +   
Sbjct: 473 EVIDYILEKTGYMDELKADDTKESESRIENINEFIGAAREFMETSEDKSLESFLSGITLV 532

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                         V +MT+H+AKGLE PVVF+      +F                   
Sbjct: 533 SDIDTAGDI--GESVVLMTLHSAKGLEFPVVFMAGMEEGIFPSSMSFIDEHELEEERRL- 589

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                                             YVG+TRA ++L +      +   K  
Sbjct: 590 ---------------------------------CYVGITRAKERLFMTYARTRNLYGKPQ 616

Query: 678 QRTWYDMVYDSFHN 691
             T    + +   +
Sbjct: 617 YNTASRFINEIPQD 630


>gi|209559530|ref|YP_002286002.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131]
 gi|209540731|gb|ACI61307.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131]
          Length = 772

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 115/648 (17%), Positives = 203/648 (31%), Gaps = 123/648 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  LDF+DLI+ T  L    D +  +     Q   +I +DE QD
Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLF---DANPDVLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++I+ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLIKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TISNM          +
Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------SQ 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +     KD  VL R    +  I            I               I+DL+A    
Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481
           + +  D++SF  ++  P        + K+        +++ E                  
Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQAI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   + +L       S  D    +L           +   E    I+ ++EFL+ T  
Sbjct: 457 MDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516

Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +++             L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 517 FDESSASQEEDETGVDRLGRFLNDLALIADTDDSQAEAAE--VTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                              EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   KS+       + +        K +      +    
Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLARPAQSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
            + E  T   +   L      ++   + +   +              +
Sbjct: 661 FSTETHTQFGQGMSLSEALQARKAQTQVRQSAQPMQAHTIPSASTSSV 708


>gi|89896637|ref|YP_520124.1| hypothetical protein DSY3891 [Desulfitobacterium hafniense Y51]
 gi|89336085|dbj|BAE85680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 760

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 115/627 (18%), Positives = 202/627 (32%), Gaps = 131/627 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ +   Y++    N  LDF+D+I+ T  L ++      +  +   +  +IL+DE QDT+
Sbjct: 173 AERVYELYQKKLLANNALDFDDIIMLTVRLFRENPE---VLSQYQDKFRYILVDEYQDTN 229

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++  L + +          R L  VGD+ QSIY F GA+ + +L  +R   +   
Sbjct: 230 HAQYALVNLLAKKY----------RNLCVVGDDDQSIYMFRGADVQNILDFERDYPE--- 276

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   ++L  ++RST  IL   + V     + +  S                     
Sbjct: 277 -----AKTLKLEQNYRSTKSILQAANSVVQNNRSRKEKS--------------------- 310

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW           + Q   +    +   +       AR +   I  ++            
Sbjct: 311 LW-------TENEDGQPIVYYVADNEHDE-------ARYMGERIQRLLN---------VE 347

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  +  VL R    + +I            I           + + IKD++A  R + 
Sbjct: 348 GRKFNEFAVLYRTNAQSRVIEERF----MKEGIPYRIFSGLKFYERMEIKDILAYLRILH 403

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-------YEYIQKFANCGISKFQ 482
           +  D +SF  +L  P     E  + KI    +E E          +YI +  +       
Sbjct: 404 NPADQVSFSRVLNVPKRGLGESTLEKILDYANEQEMPVLDAIMEADYIPELQSRAKKPLL 463

Query: 483 HVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
                + EL  + A   S       +L         +S    E     + L EFL+ T  
Sbjct: 464 AFAHLMQELRALAAAESSVTKLVEEVLKRTGYWDNLVSDKSPEAEARLENLREFLSVTAE 523

Query: 539 NEQN-------------SYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLE 584
            ++                + +  L   LEQ     +        + V +MT+H+AKGLE
Sbjct: 524 YDEKADNYETAVVQEGIEDALVPGLAGFLEQVSLVAQIDSLDQADDAVVMMTIHSAKGLE 583

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVVFL      +F         ++                                   
Sbjct: 584 FPVVFLGGMEEGIFPSSRSMLDPVL----------------------------------L 609

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            E  RL YV +TRA ++L +            + +    ++  +      D        T
Sbjct: 610 AEERRLCYVAITRARERLYLAYAQQRMLYGRTQYNRPSEFFQEIPTHVLVDRDPIDPPPT 669

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREE 728
            +       A   +T     +P    E
Sbjct: 670 RAQKAHSATARPAATPSGGPSPWRTGE 696


>gi|256850561|ref|ZP_05555987.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US]
 gi|256712584|gb|EEU27579.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US]
          Length = 748

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 125/774 (16%), Positives = 244/774 (31%), Gaps = 142/774 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMREREQKLLGPAANDIWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106
           F  L    L +            I   +  L                   +  L    + 
Sbjct: 90  FHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILAAISNG 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D      M  ++     +A  +   Y+   +++ ++DF+DLI+ T  L KK    
Sbjct: 150 KNDLLD--PEAFMQSASSPFEKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKD--- 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           + + +    +  ++L+DE QDT+  Q+E+  +L   +          + +  VGD  QSI
Sbjct: 205 SEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + ++  ++  +K           ++L  ++RST  IL+  + V    +N + 
Sbjct: 255 YGWRGANMENIMNFEQDYKKY------DVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW         Q + Q+ ++        +       A
Sbjct: 309 KN---------------------LW-------TDQGDGQKVTYYQAQSGDDE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I   I   +         K +    KD  +L R    +  +            I    
Sbjct: 334 HYIISKIQEEV---------KDKKRAYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  D   IKD+MA  + + +  D +S   ++ +P        + K+ T   E    
Sbjct: 381 VGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLITFADENHYN 440

Query: 467 ------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                 +           +K       + + I  AQ  +       IL          + 
Sbjct: 441 ILDAMGHVAESSINTRAANKLSDFGTKLRDAITYAQNGTVTGLTEKILTDFDYTDALRAE 500

Query: 521 FGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
              E    ++ LDEFL+ T R       E++  + L + ++E+               N+
Sbjct: 501 NTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFLAEVSLLSDQDDLDED--DNQ 558

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F  +                              
Sbjct: 559 VALMTLHAAKGLEFPVVFLIGMEDGLFPLQ------------------------------ 588

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688
                  +  +  EE  RL YVG+TRA  +L +    +       + +    + D + + 
Sbjct: 589 ----RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQ 644

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             + E  +K++ +   +  E     ++                      +    
Sbjct: 645 DLHKEENEKLQSSFIQSSFEKQTAPFARKAERARAEVYTAKKASGAIGAEKKGW 698


>gi|295838506|ref|ZP_06825439.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB74]
 gi|295827027|gb|EFG65192.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB74]
          Length = 681

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 115/702 (16%), Positives = 221/702 (31%), Gaps = 123/702 (17%)

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              +   L++         P K    +    K  +LK +L  +        + +      
Sbjct: 31  DAADSKRLMALVCRDLDLDP-KRFPPKSFTAKISNLKNELIDA--------EAYADEVAG 81

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           ++  A           Y+   ++   LDF+D+I+ T  LL+       +     +   H+
Sbjct: 82  EAAGAFEKTLSQAYTTYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHV 138

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS----PRTLFAVGDEKQSIYSFHGAEPKR 236
           L+DE QDT+  Q+ +++ L      G          P  L  VGD  QSIY+F GA  + 
Sbjct: 139 LVDEYQDTNHAQYTLVKELVGPADGGTGYDGGPAPEPAELCVVGDADQSIYAFRGATIRN 198

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L+ +                I L  ++RST  IL+  + V    EN +  +        
Sbjct: 199 ILQFEEDYPN--------AKTILLEQNYRSTQTILSAANAVIERNENRRPKN-------- 242

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW       ++   P+   + +  +           A+ +A  I  +
Sbjct: 243 -------------LW------TEAGNGPKITGYVADTEHDE--------AQFVADEIDRL 275

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                          +  D+ V  R    + +   +         +           +  
Sbjct: 276 TDAG---------DAKPGDMAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERR 322

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED---DIFKICTQRHETETVYEYIQKF 473
            ++D++A  R + + ED +    +L  P     +     I  +  +   T          
Sbjct: 323 EVRDVLAYLRVLANPEDSVPLRRILNVPKRGIGDRSEAMIDALSQRERITFPQALRRVDE 382

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGNE---V 525
           A    ++  + IK  + L+   +  +     P      +L       +  +    +    
Sbjct: 383 AYGMAARSANAIKRFNTLMEELRTITESGAGPAVVLEAVLERTGYLAELQASTDPQDETR 442

Query: 526 IDVLDEFLNFTLRNEQNSYS-----SLQELISELEQYPPTIKRAHSANHNEV-RIMTVHT 579
           I+ L E  +  L  EQ         +L E +  +     + +     + + V  +MT+HT
Sbjct: 443 IENLQELASVALEFEQERGDEEGAGTLAEFLERVALVADSDQIPDEEDGDGVITLMTLHT 502

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFL      VF H                                       
Sbjct: 503 AKGLEFPVVFLTGMEDGVFPHMRALG---------------------------------- 528

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +    EE  RL YVG+TRA ++L + + +  S   +         + +   +    K+  
Sbjct: 529 QVKELEEERRLAYVGITRARERLYLTRSTLRSAWGQPQYNPPSRFLEEIPADHLEWKRTG 588

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              +       A   ++               +  +E+ +  
Sbjct: 589 AAPAKVAAGPAAGIAASLSSSRARRGAPAFATRRAEEKPVVA 630


>gi|227877012|ref|ZP_03995104.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01]
 gi|227863383|gb|EEJ70810.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01]
          Length = 753

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 125/774 (16%), Positives = 243/774 (31%), Gaps = 142/774 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 35  GAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMREREQKLLGPAANDIWMST 94

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106
           F  L    L +            I   +  L                   +  L    + 
Sbjct: 95  FHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILAAISNG 154

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D      M  ++     +A  +   Y+   +++ ++DF+DLI+ T  L KK    
Sbjct: 155 KNDLLD--PEAFMQSASSPFEKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKD--- 209

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           + + +    +  ++L+DE QDT+  Q+E+  +L   +          + +  VGD  QSI
Sbjct: 210 SEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 259

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + ++  ++  +K           ++L  ++RST  IL+  + V    +N + 
Sbjct: 260 YGWRGANMENIMNFEQDYKKY------DVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 313

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW         Q + Q+ ++        +       A
Sbjct: 314 KN---------------------LW-------TDQGDGQKVTYYQAQSGDDE-------A 338

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I   I   +         K +    KD  +L R    +  +            I    
Sbjct: 339 HYIISKIQEEV---------KDKKRAYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 385

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  D   IKD+MA  + + +  D +S   ++ +P        + K+ T   E    
Sbjct: 386 VGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLITFADENHYN 445

Query: 467 ------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                 +            K       + + I  AQ  +       IL          + 
Sbjct: 446 ILDAMGHVAESSINTRAAKKLSDFGTKLRDAITYAQNGTVTGLTEKILTDFDYTDALRAE 505

Query: 521 FGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
              E    ++ LDEFL+ T R       E++  + L + ++E+               N+
Sbjct: 506 NTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFLAEVSLLSDQDDLDED--DNQ 563

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F  +                              
Sbjct: 564 VALMTLHAAKGLEFPVVFLIGMEYGLFPLQ------------------------------ 593

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688
                  +  +  EE  RL YVG+TRA  +L +    +       + +    + D + + 
Sbjct: 594 ----RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQ 649

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             + E  +K++ +   +  E     ++                      +    
Sbjct: 650 DLHKEENEKLQSSFIQSSFEKQTAPFARKAERARAEVYTAKKASGAIGAEKKGW 703


>gi|302380742|ref|ZP_07269207.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311685|gb|EFK93701.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna
           ACS-171-V-Col3]
          Length = 724

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 101/577 (17%), Positives = 187/577 (32%), Gaps = 122/577 (21%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                             ++  T    L   YE   K+   LDF+DLI+ TN L ++   
Sbjct: 144 RLKNAGATEKNIDKEDFDISLSTFTMELFQKYEHKLKRYNSLDFDDLIVKTNLLFEENPD 203

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +R K      ++ +DE QDT+  Q+++I++L           S    +  VGD  QS
Sbjct: 204 ---LREKYSDRFKYVFVDEYQDTNDTQYKLIKNLV----------SKNDNICCVGDSDQS 250

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY + GA  + +   ++  +           +I L  ++RST  IL + + V       +
Sbjct: 251 IYGWRGANIQNIQNFEKDFKN--------AKVILLEQNYRSTQPILDLANTVIKNNSLRK 302

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             +                     LW    ++++      +  ++   +           
Sbjct: 303 DKN---------------------LW---TAKNEGDMPIYRRMYSDIDE----------- 327

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A ++   I             + R    +++ +L R    + L       L     I   
Sbjct: 328 ADQVVQWIEQ----------ERYRENPYEEMAILYRTNAQSRLFEERLNRL----GIPNR 373

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETE 464
                   D   IKD ++  R + +  D+++   ++  P     +  + K +   ++ + 
Sbjct: 374 VVGGLKFYDRKEIKDCVSYLRIVENLNDNMALNRIINEPKRGIGKTTMDKLLQCSQNRSI 433

Query: 465 TVYEYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518
           ++ +YI+      F+N    K Q     I          +  +    IL     R     
Sbjct: 434 SMMQYIKDTDLPDFSNATAKKLQEFYYLIKSFPK--DEMNVAELMEYILDKTGYRANLEK 491

Query: 519 --SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIM 575
             +R     ++ +DE+++   +  Q++    + L   LE             N   V +M
Sbjct: 492 SNNRDDKTRLENIDEYISSLYQFVQDNPD--KNLREYLETSSLMTDLDKTDDNTKGVSMM 549

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE  VVF           +                                  
Sbjct: 550 TIHAAKGLEFDVVFFTGLEEGTIPSRV--------------------------------- 576

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                    EE  RL YV +TRA  +L I    +   
Sbjct: 577 -----DEDVEEERRLCYVAITRARKKLYITSVQSRRK 608


>gi|295396697|ref|ZP_06806843.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294970443|gb|EFG46372.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 769

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 118/760 (15%), Positives = 229/760 (30%), Gaps = 133/760 (17%)

Query: 11  ESYELIYK--DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--------------Q 54
                I       P     ++  NK     ++     + ++A+ +              +
Sbjct: 63  RRIAHILATGQAHPGQILAITFTNKAAREMLDRVTSLVGERARGMWISTFHSACVRILRR 122

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +A         +    S  L  + T + ++  ++       L+ ++   ++E +   +  
Sbjct: 123 EARDRTSNFSIYDAQDSLRLITQVTKELDLDPKKFAP--KTLRNRISNLKNECVTASE-- 178

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                 +           + + Y+E        DF+DLI+ T  LL        I     
Sbjct: 179 -FEATAQENNPLEQATARVYSRYQERLAVANAYDFDDLIMETVRLLTHNPE---IARNYR 234

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
               HI +DE QDT+  Q+ +IR L      G +       L  VGD  QSIY+F GA  
Sbjct: 235 ARFTHIFVDEYQDTNPAQYALIRVLA-----GADLPEPTGQLTVVGDADQSIYAFRGATV 289

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + ++  ++               I L  ++RST +IL+  + V    ++ +  +      
Sbjct: 290 RNIVEFEKDFPH--------AQTIVLEQNYRSTQNILSAANAVIRNNDDRRDKN------ 335

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                          LW       D     +   W +  +           A+ I  TI 
Sbjct: 336 ---------------LW------TDQGSGEKVVGWVASTEHAE--------AQFIVDTID 366

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++             +   D  V  R    +  I            +           +
Sbjct: 367 ELMDES---------DLTYGDFAVFYRTNAQSRAIEDAL----VRAGLPYKVVGGTRFYE 413

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED-DIFKICTQRHETETVYEYIQKF 473
              IKD++A    + +  DD++   +L  P     +  + F       E  + Y+ + + 
Sbjct: 414 RKEIKDVLAYAHVLSNPSDDVNLRRILNVPKRGIGDRGEAFIAALANRERISFYDALLRA 473

Query: 474 A------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524
                     +   Q   K + +L+  +Q   P      I+               +   
Sbjct: 474 EEAPGMTKRTLGPLQTFAKLLSDLLEASQGAQPSRVLEAIMEQTGYLDGLNRSTDPQDES 533

Query: 525 VIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            +D L E +      +     ++L + +  +           S     + +MT+HTAKGL
Sbjct: 534 RVDNLAELVAVAEDFQHTQPEATLNDFLERVSLTADADSVPDSQAGE-ITLMTLHTAKGL 592

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL       F H+                                        + 
Sbjct: 593 EFPVVFLTGLEDGTFPHQRSFTS----------------------------------ATE 618

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             E  RL YVG+TRA  +L + +    S   +   N  + +         D +       
Sbjct: 619 LAEERRLAYVGLTRAMQRLFLSRSETRSMWGQSSYNPPSRFLQEIPEELIDWKSTGSVTA 678

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              +                T      +  ++  ++++P+
Sbjct: 679 PVASSANRSLSAGRYTSGGRTAASVGRSGSRIRPQREVPE 718


>gi|298385429|ref|ZP_06994987.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14]
 gi|298261570|gb|EFI04436.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14]
          Length = 788

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 103/683 (15%), Positives = 208/683 (30%), Gaps = 124/683 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y E  ++   +DF+DL++ T  L +       +  +  ++  ++L+D
Sbjct: 170 AAKVPAVREIYTRYWERCRQAGAMDFDDLLVYTYILFRDFPE---VLARYREQFRYVLVD 226

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   ++
Sbjct: 227 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKV 276

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E        S            
Sbjct: 277 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKEVFS------------ 316

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +A  I+ +       
Sbjct: 317 ---------------EKERGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 349

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       +               IKD++A
Sbjct: 350 -----HSYGYADFAILYRTNAQSRVFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 400

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI +       +++  + +          
Sbjct: 401 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATENGVSLWAALCEPLSYGLNINK 460

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +K Q   + I   +      S ++  T I+               E     + ++E 
Sbjct: 461 GTHTKLQGFRELIEGFMTDQADKSAYEIGTDIIRRSGIINDVCQDTSPENLSRKENIEEL 520

Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N         + E N   SL + +SE+           + +  ++ +MTVH+AKGLE  
Sbjct: 521 VNGMNDFCALRQEEGNPNISLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 579

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 580 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 605

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   I          K    +    + D   N  R+      +    
Sbjct: 606 ERRLFYVAITRAEEHCYISFAKTRFRYGKMEFGSPSRFLRDIDVNYLRLPHEAGVSRSVD 665

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           +    +                T        +   K      +       +  S +    
Sbjct: 666 EGAGRFRREIGGGFTRTASPTRTPYGTKFSDRERPKTQVIAPSVPKNLKKV--SAVSGSS 723

Query: 767 KTNLESLLSDNQTFNRGLII-HK 788
             +  +  +       G +I H+
Sbjct: 724 TRSASAGSASVTGVQAGQMIEHE 746


>gi|60682035|ref|YP_212179.1| putative helicase [Bacteroides fragilis NCTC 9343]
 gi|60493469|emb|CAH08255.1| putative helicase [Bacteroides fragilis NCTC 9343]
          Length = 786

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 104/689 (15%), Positives = 219/689 (31%), Gaps = 129/689 (18%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             A +   + + + Y E  ++   +DF+DL++ T  L +       +  +  ++  ++L+
Sbjct: 168 LAAKMPAIRDIYSRYWERCRQAGAMDFDDLLVYTYILFRDFPD---VLARYREQFRYVLV 224

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +
Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           I             + +L  ++RST  I+   + +    E        S           
Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                           + +       + +Y D    +         +   I+ +      
Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    +  D  +L R    + +     R       +               IKD++
Sbjct: 349 ------HDYEYSDFAILYRTNAQSRVFEEALR----KRGMPYKIYGGLSFYQRKEIKDII 398

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474
           A  R +++  D+ +F  ++  P     +  + KI T       +++  + +         
Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATDNNVSLWTALCEPITYGLSIN 458

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
               +K Q     I + +      + ++  T I+       +       E     + ++E
Sbjct: 459 KGTHTKLQDFRALIEQFMADVTVKNAYEIGTEIIRQSGIINEVCQDNSPENLSRKENIEE 518

Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            +N         + E N+  SL + +SE+             +  +V +MTVH+AKGLE 
Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+V     +F                                              E
Sbjct: 578 RNVFVVGMEENLFPSGMAGDSP----------------------------------RAME 603

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YV +TRA +   +          K    +    + D      ++ +        
Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSI 663

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI-------LN 758
            +    +        +     E    +   ++   ++  + I        +       L+
Sbjct: 664 DEGAGRFRREMEEGYSRRSSSERFSARPSADRPERERPKAQIIAPTVPRNLKKVSGTMLS 723

Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786
           PS+    G   ++   + +++ F  G +I
Sbjct: 724 PSSASGAGVAGVQPGQTIEHERFGLGEVI 752


>gi|227494729|ref|ZP_03925045.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831729|gb|EEH64112.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 868

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 122/818 (14%), Positives = 232/818 (28%), Gaps = 162/818 (19%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQK 77
                    ++  NK  +   E     +  +A+ +   +              +  L   
Sbjct: 96  RARAGEILAITFTNKAAAEMRERVANLVGPQARRMWVFTFHSACVRILREQYQAAGLRSS 155

Query: 78  FTPQKN--------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA---S 126
           FT            ++++ +N  +     KL         +++   T++ ++ T A    
Sbjct: 156 FTIYDAADSQRLITLVSKNLNLDTKRFTAKL--LAARISDLKNELITWQKYQETAANDPV 213

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +  HY+    +  VLDF+DLI+    LL+K      +     +   HIL+DE Q
Sbjct: 214 SKAVAQVYKHYQRQLNEANVLDFDDLIMTVVQLLQKNPA---VAEHYRRRFRHILVDEYQ 270

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L      G         L  VGD  QSIY+F GA  + +   ++    
Sbjct: 271 DTNHAQYVLVRELI-----GTGADVPAGELTVVGDSDQSIYAFRGATIRNIEEFEKDF-- 323

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RST +IL+  + V +     +  +                  
Sbjct: 324 ------TNAHTVVLEQNYRSTQNILSAANAVIAKNTGRRAKA------------------ 359

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW        S    +  S+ +         S    AR +   I  +          
Sbjct: 360 ---LW-------TSSGAGELISYDAA-------DSEYDEARAVIQEIDRL---------- 392

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  DI +  R    +  +            I           +   IKD +A  +
Sbjct: 393 TPFDFKYGDIAIFYRTNSQSRALEEHL----IRAGIPYRVVGGTKFYERKEIKDALAYLQ 448

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------- 478
            I + +D ++   ++ +P     +     I T        +    +              
Sbjct: 449 VIANPDDTVALRRVINTPRRGVGDKAEAAIATHAEMQGIGFGAAVQQVWIQQGCPRGESE 508

Query: 479 --------------------------------SKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                                           +   +    I  +   A+  +  +    
Sbjct: 509 GLDISEGDWQNAVSEALTQTPASVSGITTRALNAVANFWGLIEAMQIFARTNTIAEVLDQ 568

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIK 562
           +L       +       +    ++ L E  +        +    L + +  +       +
Sbjct: 569 VLDLTGYLDELRRSTDPQDMNRVENLAELHSVAADFATTNPQGQLHDFLERVALVADADQ 628

Query: 563 RAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            A    N  EV +MTVHTAKGLE PVVF+       F H+                    
Sbjct: 629 VASESENSGEVTLMTVHTAKGLEFPVVFVTGLEDGTFPHQRSL----------------- 671

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +  S   E  RL YV +TRA  +L + + +  S          
Sbjct: 672 -----------------MDPSELAEERRLAYVAITRARKKLYLSRAAVRSAWGTPTDLPP 714

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              + D       V++         D + +  +S+    ++   R  +            
Sbjct: 715 SRFLEDIPAELMEVRR----AHTQMDRYRSGGYSSGSGYSSTTGRSYSSYDDDFAPAFGS 770

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                  N  +      PS         L    ++   
Sbjct: 771 GTGYRGPNAEHSSVSSKPSGPSLSIAQKLSKRSAEAGA 808


>gi|259502570|ref|ZP_05745472.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041]
 gi|259169460|gb|EEW53955.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041]
          Length = 752

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 116/766 (15%), Positives = 221/766 (28%), Gaps = 148/766 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   N             + ++   L            
Sbjct: 21  GAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFTNKAAKEMQERVGKLLGEGAQDIWVST 80

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L +        +     + +++   +K+   +   +  K   R     +  +
Sbjct: 81  FHSLCVRILRRDIEKLGYNRAFTIADTSEQRTLMKQVCAELNIDPKKFDPRSILSTISNA 140

Query: 123 TLASL--------------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             A L                     +       Y+E  + N  LDF+DLI+ T +L ++
Sbjct: 141 KNALLTPQEYAAKAGSDNNPHSMYSQVVARAYKLYQEQLEANQALDFDDLIMKTIELFEQ 200

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                          ++I +DE QDT+  Q++++  L + +            +  VGD 
Sbjct: 201 D---QETLEFYQDRFHYIHVDEYQDTNDAQYKLVHMLADKYE----------NICVVGDA 247

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA  + +L  +R               + L  ++RST +IL   ++V     
Sbjct: 248 DQSIYGWRGANIENILNFERDYP--------GAHTVMLEQNYRSTQNILDAANEVIKNNN 299

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +  +                     LW              + S+    +   +    
Sbjct: 300 GRKDKN---------------------LW-------TENGRGDKISYYQAQNEHDE---- 327

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A+ I   I                     D  +L R    + +I            +
Sbjct: 328 ---AQYIVSKIQEEHAQ---------HGYHYNDFAILYRTNAQSRVIEETF----MKSSV 371

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRH 461
                      D   I+D++A    I++ +D +SF  ++ +P        +  +      
Sbjct: 372 PYTMVGGHKFYDRKEIRDILAYLTLIVNHQDSMSFSRVVNTPKRGIGLTSVEHLREFAND 431

Query: 462 ETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
              ++ E  Q             +K     + I +L   A F S  D    IL      Q
Sbjct: 432 NHWSLLEASQNVDIANTITARTRNKLADFGQLIKDLDQQADFLSITDLTDQILERSGYNQ 491

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-------LQELISELEQYPPTIKRAH 565
                   E     + LDEF + T   ++            L   +++L           
Sbjct: 492 MLRKDNSLEAQARQENLDEFKSVTQEYDKQHADDDVDNRQKLVNFLADLALVSDQD--DV 549

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                 V +MT+H AKGLE PVVFLV     +F                           
Sbjct: 550 DEQAPAVTLMTLHAAKGLEFPVVFLVGMEEGIFPLSRALLEDDELEEERRL--------- 600

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWY 682
                                     YVG+TRA  +L +    +       +++    + 
Sbjct: 601 -------------------------AYVGITRAKKKLYLTNAVSRLLYGRVQRNQPSRFV 635

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
           + +      +E          +  D+  A + +    +     R+ 
Sbjct: 636 EEISPELLEEEGGMNSFGGGRLPFDKRAAMKPTYRSQQAKHHYRDA 681


>gi|325846585|ref|ZP_08169500.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481343|gb|EGC84384.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 729

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 102/616 (16%), Positives = 204/616 (33%), Gaps = 118/616 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +  +YE+ K +   LDF+DLI+ T DL     +          +  ++ +DE QDT+  Q
Sbjct: 170 IYKNYEKKKFEYNSLDFDDLILKTLDLFA---IDPDTLKYYQNKFEYVYVDEYQDTNKSQ 226

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+I+++                +  VGD  QSIYSF GA+   +L  ++  +       
Sbjct: 227 YELIKAI----------GKLHNNITVVGDADQSIYSFRGADINNILDFEKDFKN------ 270

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RST++I+ V +K+       +  +                     LW 
Sbjct: 271 --AKTIKLEQNYRSTSNIINVANKLIRNNTERKDKN---------------------LW- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  SQ +  +  +        +        + +   I++++              +
Sbjct: 307 ------TSQNDGSEVLYKKSSVESEEG-------KFVIDEINSLLNDG----------YK 343

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            KD+ +L R    + +          D              D   IKDL++  + +++ +
Sbjct: 344 LKDMAILYRMNAQSRIFEEYLMKNLLD----YKVVGGLKFYDRKEIKDLISYLKVLVNPK 399

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVI 485
           DD+S   ++  P        I  +  +         E                +  +   
Sbjct: 400 DDISLKRIINEPKKGIGNKTIENLEKEASKLGFSLTELVCDPSLFSNLPTKLKTSCEKFY 459

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             + E     +     D    +L      +     +  E    ID L+EF++     E N
Sbjct: 460 NPLSETFDNYEDYKIVDLIEEVLDKSGYIKALEESYSVENRSRIDNLNEFISSAAEYESN 519

Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      +   LE             + + + +MT+H+AKGLE  V F+V     +F  K
Sbjct: 520 NPED--NIHDYLENLSLLSDLDKTEESDDSISLMTIHSAKGLEFKVCFVVGMDDGLFPSK 577

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +   EE  RL YV +TRA ++
Sbjct: 578 RSID-----------------------------------EGNIEEERRLCYVAITRAMEK 602

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +          ++        + +   + +++ + K        +  + E        
Sbjct: 603 LYLSSAEIRRQFGQAVYYKPSRFLSEIKSSIKQIDQDKTPAYSPYVKMRSNEAYMRDKAR 662

Query: 722 TPLEREETIKQLMDEQ 737
             + ++ T+K+   E+
Sbjct: 663 ESVLKKNTVKESSKEE 678


>gi|312138580|ref|YP_004005916.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311887919|emb|CBH47231.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
          Length = 824

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 100/680 (14%), Positives = 189/680 (27%), Gaps = 137/680 (20%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           I          + +     L   + AHY++  +    LDF+DLI  T  LL+       +
Sbjct: 179 IDPEEAAADADRDSNDLDKLVARVYAHYQQRLRAANALDFDDLIGETVGLLQANP---QV 235

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   H+L+DE QDT+  Q+ ++R L  +          P  L  VGD  QSIY+F
Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGE-ESDDPYAVPPGELCVVGDADQSIYAF 294

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + +   +R               I L  ++RST +IL+  + V S     +    
Sbjct: 295 RGATIRNIEEFERDYP--------DARTILLEQNYRSTQNILSAANSVISRNTGRREKR- 345

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  +     +   +       A+ +
Sbjct: 346 --------------------LW-------TDSGEGELITGYVADNEHDE-------AQFV 371

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I  ++              +  ++ V  R    +  +  +         I       
Sbjct: 372 ASEIDRLVDAGET---------KFGEVAVFYRTNNSSRALEEIF----IRLGIPYKVVGG 418

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
               +   ++D++A  R + +++D +S   +L +P     +     +     +    +  
Sbjct: 419 TRFYERKEVRDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVSVYAEQKGVGFAE 478

Query: 470 IQKFA---------NCGISKFQHVIKYIHELIHIAQF--------CSPHDFFTLILGAKK 512
             + A                   ++ +  L  +               +    +L    
Sbjct: 479 ALRAAGEGSVPLLNTRSQKAITSFLELLDGLRALMVSTDADGNDLTDIGEVVEGVLDRTG 538

Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRN---------------------EQNSYSSLQ 548
            R++  +    +    +D L+E ++                          E        
Sbjct: 539 YRRELEASSDPQDGARLDNLNELVSVAREFSSDARNAAAFAEENAAEGDVVEDEGQPDPG 598

Query: 549 ELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            L + LE+                 V +MT+HTAKGLE PVVF+       F H      
Sbjct: 599 SLAAFLERVSLVADSDQVPDEGEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGD 658

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                              +   E  RL YVG+TRA  +L + +
Sbjct: 659 P----------------------------------AELSEERRLAYVGITRARHRLYLTR 684

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
               S   +         + +   +    ++                             
Sbjct: 685 AIVRSAWGQPVTNPESRFLQEIPADLVNWRREDPGVLGTGGAIGGGRPRGQGYGGGFGGG 744

Query: 727 EETIKQLMDEQKIPKKLFSP 746
                             +P
Sbjct: 745 GAGFGSTGRSGASSPSFGAP 764


>gi|284048669|ref|YP_003399008.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731]
 gi|283952890|gb|ADB47693.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731]
          Length = 1116

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 133/982 (13%), Positives = 294/982 (29%), Gaps = 88/982 (8%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSL------SMETGNPTILKKAQTLQ 54
            L     L   +    I   L       ++      +         E G          L 
Sbjct: 155  LAALLDLYPADRLARILVALIDDLPEILALPGGLAAPYEVSLGGEEAGKIEAEGALDALL 214

Query: 55   QASQTQCIEER--FSLLSS-----FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
            ++      + R     L+                K     +    +  +K+ +K++++  
Sbjct: 215  ESRDLAGPKSRAKLDALADQREAIHQWIAAGEYSKASAALKPVSATGKIKDLVKEAKEAL 274

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             ++          +       L         +A +   +  F  L     +LL+K     
Sbjct: 275  ARLETLSLDGAGAEQARHWENLLGRFRQALLDAAESREIYSFGYLSGRAVELLEK---RP 331

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             + ++      ++++DE QDT+  Q  ++  L+     G +     R LF VGD KQSIY
Sbjct: 332  NVLFRYKSRFRYLMVDEFQDTNEEQKRLVYLLSG----GSSRSLQGRNLFVVGDAKQSIY 387

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F GA+     + +                I +  +FRS  +I+   + +F         
Sbjct: 388  RFRGADVSVFRQVRDAIG------ETGGDNIVMDDNFRSAPEIIEACNTLFDDLLGTDSR 441

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
            S+ +   +        +     L +   +  + Q                         R
Sbjct: 442  SDVTAQPLHPHQPSSRKPVFAVLKKGECTLEECQQAEG---------------------R 480

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
             +A  I  +              +    + +L+     +         L     I    +
Sbjct: 481  YVAQAIRQLRED---------TGLPYGQMAILLPAIHLSRQYEEALTAL----GIKSQVS 527

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            D     +   + D ++L  F+L+   D +    L+SP    S+  +  +     E  +++
Sbjct: 528  DGKGFYERQEVVDWISLLTFLLNPRKDWALAGFLRSPYAGISDRQLTDLLKPWPE-LSLW 586

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVI 526
            E            F  + + +  L   A F S  +       A       ++ R G E +
Sbjct: 587  ES---LRQSLEEPFVTLSRKLEALHRTALFQSLPELMDAFQEAFAVEPTLLAQRGGREKL 643

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISEL----EQYPPTIKRAHSANHNEVRIMTVHTAKG 582
                +     ++       + ++ +  L                A+   V+IMT+H +KG
Sbjct: 644  ANFRKLRALGVKGAMEDGDTARDFLDRLNLMRRLSARESAANQEADPEAVQIMTIHKSKG 703

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE P VFL D   +  +H     +  +P       +P     +    ++ + L     + 
Sbjct: 704  LEFPAVFLPDLSKK--NHNDTLGIQFLPGQGFGVRVPD-AQGNLLETSVYTRLKGEKARL 760

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---VYDSFHNDERVKKIK 699
             + E  R LYV MTRA   L +     +    +            +   F  +       
Sbjct: 761  ERAEKQRQLYVAMTRAEKYLYLINVDESKEGSRPPDPDKEKWGQSLQRVFAPEGPHGDQM 820

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY-ILN 758
                ++  E +  + +           +  +        +P+ L       +       +
Sbjct: 821  DWEKLDVAEILENQETGQPGAGEAFVLDPAVYDRGRPVTVPRDLELSASALLEYDTCPRS 880

Query: 759  PSTIDTKGKTNLESLL-----SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                  +    ++              + G  +H++L+++   PE +          +  
Sbjct: 881  FYYHYFRHMPGIDPETVGEGSHRISAIDLGTYVHRVLELLQEEPEEEALAEALEVLDRTG 940

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK-INCPKKDIIISGRIDQIS 872
                    +     + +   +P+        + +E   +       +   +  G +D++ 
Sbjct: 941  AEKKVFAREG-RKLVEQYCASPLYQELKDLPAQAERDFALPLFQLEQGRAVFQGSVDRLV 999

Query: 873  ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEP 930
                    I +YKT H      E     +  QL+IY    +  YP + +    L ++ + 
Sbjct: 1000 TLPDGRLGIVDYKTGHPPTDGEE--KQGYTRQLTIYALAAEILYPGQKVAWARLHFLQDC 1057

Query: 931  KVFII-PQNKLNKAFAEISTKI 951
              + +  + +  +    +   +
Sbjct: 1058 SSWELKDREQEEEKLKALVENL 1079


>gi|225018678|ref|ZP_03707870.1| hypothetical protein CLOSTMETH_02628 [Clostridium methylpentosum
           DSM 5476]
 gi|224948586|gb|EEG29795.1| hypothetical protein CLOSTMETH_02628 [Clostridium methylpentosum
           DSM 5476]
          Length = 784

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 110/647 (17%), Positives = 210/647 (32%), Gaps = 122/647 (18%)

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
             +  ++ +++D+ +   +           +        +   Y+   K +  LDF+D+I
Sbjct: 193 KAVLGEISRAKDQMLTPEEYERQAGSDFRRIEL----AKIYRSYQHQLKSSNALDFDDII 248

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             T  LL++      +  +      +IL+DE QDT+  Q+ ++  L+             
Sbjct: 249 CLTVVLLEQNPD---LLERYRDRFRYILVDEYQDTNHAQYRLVSLLSG----------GH 295

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           + L  VGD+ QSIY F GA  + +L  ++  Q          ++I L  ++RST +IL+ 
Sbjct: 296 QNLCVVGDDDQSIYKFRGATIENILSFEKQFQN--------ATVIRLEQNYRSTQNILSA 347

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + V       +G +                     LW         + + +  S     
Sbjct: 348 ANAVIENNTGRKGKN---------------------LW-------TDKGDGEPVSVCRVN 379

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           +   +       A  IA TIS  I +           ++ +D  +L R    +  I    
Sbjct: 380 NENAE-------ADFIASTISQDIESG----------MKFRDHAILYRMNAQSATIERYF 422

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   I           D   IKD++A    + +  D+L    ++  P        +
Sbjct: 423 ----VRAGIPYRIVGGTKFYDRKEIKDILAYMSVVNNTGDNLRLKRIINEPKRGIGPGTV 478

Query: 454 FKICTQRHETETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            K+             + + A+         +  +     I +L   A      +F   +
Sbjct: 479 GKVQEIADGLGLAMFDVLRNADTYAALVKKAASLRDFSNMIEQLREDAVELPLDEFLDSL 538

Query: 508 LGAKKGRQQFISR--FGNEVIDVLDEFL-NFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           +       +   +   G   I+ + E   N     ++N  ++L   + E+  Y       
Sbjct: 539 IARTGYVDELKKQGKEGQTRIENIQELKTNLIKFRQENDDATLGGFLEEVALYTDLDSFN 598

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              + + V +MT+H+AKGLE PVVF+      +F                          
Sbjct: 599 A--SDDSVTMMTMHSAKGLEFPVVFIAGMEEGIFPGVRSIGEP----------------- 639

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTW 681
                               EE  RL YVG+TRA  +L I   +      N K +    +
Sbjct: 640 -----------------DELEEERRLAYVGITRAKKKLYITNAAQRMLFGNTKYARPSRF 682

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
              + +   + E     ++ N   +   +              + E 
Sbjct: 683 IGEIPEHLVDSEDKTVSRVINFEEESRRVVQPQINVDGVGLRHKAEA 729


>gi|322516818|ref|ZP_08069720.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC
           49124]
 gi|322124655|gb|EFX96119.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC
           49124]
          Length = 773

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 106/645 (16%), Positives = 200/645 (31%), Gaps = 123/645 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  +DF+DLI+ T  L  K      +     Q   +I +DE QD
Sbjct: 170 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 226

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 227 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 274

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +                      
Sbjct: 275 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI N++  +       
Sbjct: 310 --LW-------TQNDDGEQIVYYRANDERDE-------AIFVASTIDNIVREEGK----- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 349 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 401 IANPSDNISFERVVNEPKRGVGPGTLEKIRTFAYEQNMSLLDASANIMLSPIKGKAAQGV 460

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I  L       S  +    IL           +   E    I+ ++EF++ T  
Sbjct: 461 YDFANTILNLREQLDGLSITETVEAILDKSGYLDALSMQQTLESQARIENIEEFMSVTKN 520

Query: 539 N---------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                     ++     L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 521 FDETNTDVTEDETGIDRLGRFLNDLALIADTDDGDMEAAE--VTLMTLHAAKGLEFPVVF 578

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF      +                                            
Sbjct: 579 LIGMEEGVFPLSRASEDPEELEEERRL--------------------------------- 605

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             YVG+TRA + L +   +  +   K++       + +   +  + + +    + +    
Sbjct: 606 -AYVGITRAEEILFLTNANTRTLFGKTSYNRPSRFLREISDDLLQYQGLARPANSSFGVR 664

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
              E  T   +   L++    ++   + +         K     P
Sbjct: 665 FTKEEPTQFGQGMSLQQALQTRKANAQPQRHTGAQPFSKATGGLP 709


>gi|8928266|sp|Q9S3Q0|PCRA_LEUCI RecName: Full=ATP-dependent DNA helicase pcrA
 gi|5762478|gb|AAD51119.1|AF176554_1 DNA helicase PcrA [Leuconostoc citreum]
          Length = 749

 Score =  297 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 113/754 (14%), Positives = 220/754 (29%), Gaps = 136/754 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC-IEE 64
           G    ++  L ++    +    V                 + ++   L      +     
Sbjct: 30  GAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREMRERIAALLSEDVARDIWVS 89

Query: 65  RFSLLSSFFLTQKFT---PQKNII---TQEINKKSPDLKEKLKKSQDEFIK--------- 109
            F  L+   L +        KN     T         +   L    +++           
Sbjct: 90  TFHALAVRILRRDGEAIGLAKNFTIIDTSAQRTLMKRVINDLNLDTNQYDPRTILGMISN 149

Query: 110 IRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            ++     + +      A       +   Y+   K++  +DF+DLI+ T DL +    + 
Sbjct: 150 AKNDMLQPRDYAKAADNAFQETVAEVYTAYQAELKRSQSVDFDDLIMLTIDLFQS---AP 206

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +  +  Q+  ++ +DE QDT+  Q+ ++  L +            + L  VGD  QSIY
Sbjct: 207 DVLARYQQQFEYLHVDEYQDTNDAQYTIVNLLAQ----------RSKNLAVVGDADQSIY 256

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA    +L  ++               + L  ++RST +IL   + V +        
Sbjct: 257 GWRGANMNNILNFEKDYPN--------AHTVMLEQNYRSTQNILDAANAVINHNNERVPK 308

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW              Q ++        +       A 
Sbjct: 309 K---------------------LW-------TENGKGDQITYYRAQTEHDE-------AN 333

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I  +  T  +            D  VL R    +  I            +     
Sbjct: 334 FILSNIQQLRETKHMA---------YSDFAVLYRTNAQSRNIEESL----VKANMPYSMV 380

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-------FKICTQR 460
                 +   I D+MA    I + +D+ +F  ++  P        +        ++    
Sbjct: 381 GGHKFYERKEILDIMAYMSLITNPDDNAAFERVVNEPKRGLGATSLTRLRELANRLNVSY 440

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            +     E          SKF    + +H L   ++F +  +   L++     RQ    +
Sbjct: 441 MKAIGSIELAPSITTKAASKFLTFAEMMHNLRQQSEFLNVTELTELVMTQSGYRQMLAEK 500

Query: 521 FGNE---VIDVLDEFLNFTLRNEQ----NSYSSLQELISELEQYPPTIKRAH-SANHNEV 572
              +    ++ L+EFL+ T   +         S+  +   L                  V
Sbjct: 501 NDPDSQARLENLEEFLSVTKEFDDKYQPEDPESIDPVTDFLGTTALMSDLDDFEEGDGAV 560

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFL+     +F                                  
Sbjct: 561 TLMTLHAAKGLEFPVVFLIGLKEGIFPLS------------------------------- 589

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                 + +   EE  RL YVG+TRA  +L +    +     ++        + +     
Sbjct: 590 ---RAMMDEDLLEEERRLAYVGITRAMKKLFLTNAFSRLLYGRTQANEPSRFIAEISPEL 646

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                  L+    + + + ++        T  + 
Sbjct: 647 LETAYSGLSRDKTQKKTLPFDRKMQRATATTYQA 680


>gi|315641090|ref|ZP_07896169.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952]
 gi|315483098|gb|EFU73615.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952]
          Length = 754

 Score =  297 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 116/720 (16%), Positives = 223/720 (30%), Gaps = 146/720 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L            
Sbjct: 32  GAGSGKTRVLTHRVAYLIQEKDVNPWNILAITFTNKAAREMRERIHALVGPESEDIWIST 91

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L ++                      ++ +    I+ K  D +  L    + 
Sbjct: 92  FHSMCVRILRREVEKIGYNRNFTILDSSDQLSLMKRMLKELNIDPKKYDPRGILASISNA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             K++   N  K+  S +            Y++   KN  +DF+DLI+NT +L KK    
Sbjct: 152 KNKLQTPANVSKLANSFIEL--QVARCYEAYQKELVKNQCMDFDDLIMNTIELFKKHPD- 208

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +      + ++I +DE QDT+  Q+ ++R L + F            L  VGD  QSI
Sbjct: 209 --VLAFYQNKFHYIHVDEYQDTNHAQYTLVRMLADRFE----------NLCVVGDADQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +               +I L  ++RST  ILT  ++V    +  + 
Sbjct: 257 YGWRGADMQNILDFEDDYPA--------AKVILLEQNYRSTKTILTAANQVIKQNKQRKA 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW             ++  +    +   +        
Sbjct: 309 KN---------------------LW-------TDNEPGEKIVYFRGGNEHDEG------- 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R +   I   + +               +  VL R    + ++            I    
Sbjct: 334 RFVVSEIVKRVRSKEHI---------YGEFAVLYRTNAQSRVVEESL----MKANIPYKL 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                      I+D++A    + +  D +S   ++ +P        + K+         +
Sbjct: 381 VGGQKFYSRKEIRDVLAYLNVLANPSDSISLERIINTPKRGIGPGTVEKLKGFADENGWS 440

Query: 466 VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++E  Q       +     + +     + +L  +  F S  +    +L       +  ++
Sbjct: 441 LFEGAQNVNVSTISGKANRELEQFGLLLTDLQQMIPFLSLTELTEEVLKRTGYLNELKNQ 500

Query: 521 FGNE---VIDVLDEFLNFTLRN-----------EQNSYSSLQELISELEQYPPTIKRAHS 566
              E    I+ + EFL+ T              E +    L E ++EL            
Sbjct: 501 KTIESEARIENIQEFLSVTQEFDRRYASQAEDSEADPTEKLAEFLNELALLADVDSF--E 558

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            + ++V +MT+H AKGLE P+VFLV     +F                            
Sbjct: 559 EDSSQVTLMTLHAAKGLEFPIVFLVGMEENLFPLSRALLEDKELEEE------------- 605

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                                 RL YVG+TRA  QL +      +   +S        + 
Sbjct: 606 ---------------------RRLAYVGITRAEKQLFLTNAMTRNLYGRSQYNHPSRFLE 644


>gi|228477389|ref|ZP_04062025.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126]
 gi|228250824|gb|EEK10012.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126]
          Length = 769

 Score =  297 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 107/645 (16%), Positives = 201/645 (31%), Gaps = 123/645 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  +DF+DLI+ T  L  K      +     Q   +I +DE QD
Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDKNPD---VLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +                      
Sbjct: 271 ------EAKVVLLEENYRSTKKILQAANEVIKNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TI N+I  +       
Sbjct: 306 --LW-------TQNDDGEQIVYYRANDERDE-------AVFVASTIDNIIREEGK----- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 345 ----NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +                  
Sbjct: 397 IANPADNISFERVVNEPKRGVGPGTLEKIRTFAYEQNMSLLDASANIMLSPIKGKAAQGV 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I  L       S  +    +L           +   E    I+ ++EF++ T  
Sbjct: 457 YDFANMILNLRDQLDGLSITEAVEAVLDKSGYLDALSMQQTLESQARIENIEEFMSVTKN 516

Query: 539 NEQNSYSS---------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            ++ +            L   +++L     T      A    V +MT+H AKGLE PVVF
Sbjct: 517 FDETNSDDTEDETGIDRLGRFLNDLALIADTDDGDMEAAE--VTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF      +                                            
Sbjct: 575 LIGMEEGVFPLSRASEDPEELEEERRL--------------------------------- 601

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             YVG+TRA + L +   +  +   K+N       + +   +  + + +    + +    
Sbjct: 602 -AYVGITRAEEILFLTNANTRTLFGKTNYNRPSRFLREISDDLLQYQGLARPANSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
              E  T   +   L++    ++   + +         K     P
Sbjct: 661 FTKEEPTQFGQGMSLQQALQTRKANAQPQRHTGAQPFSKATGGLP 705


>gi|255324817|ref|ZP_05365930.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum
           SK141]
 gi|255298117|gb|EET77421.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum
           SK141]
          Length = 841

 Score =  297 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 119/818 (14%), Positives = 229/818 (27%), Gaps = 163/818 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + + +  V+                + ++   L      +     
Sbjct: 65  GAGSGKTAVLTRRIAYLMRHRGVNPWEILAITFTNKAAAEMKERVGGLVGPVAERMWVST 124

Query: 66  FSLLSSFFLTQKFTPQKNIITQ----EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
           F  +    L Q       + T     + +     L    K  Q +  K   R    ++  
Sbjct: 125 FHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDMQLDLKKYTPRVLANQISN 184

Query: 122 STLASL-----------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                +                 T    + A Y+   +    +DF+DLI     +  +  
Sbjct: 185 HKNELIGPESALEKAQQTKNPFETTVAQVYAEYQRRLRAANAVDFDDLIGEVVRIFTQH- 243

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +   H+LIDE QDT+  Q+ ++ +L     +G +       L  VGD  Q
Sbjct: 244 --QQVVDFYRRRFKHVLIDEYQDTNHAQYALVAALVGRGELGPDA----PELCVVGDSDQ 297

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY+F GA  + +   +R   +           I L  ++RST  IL   + V +  EN 
Sbjct: 298 SIYAFRGATIRNIQEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNENR 349

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  +                     LW        +    +Q       +   +      
Sbjct: 350 REKN---------------------LW-------TAHGEGEQIVGYVADNEHDE------ 375

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR IA  I ++                  DI V+ R    +  +  +         I  
Sbjct: 376 -ARFIASEIDSLADKGR----------SYSDIAVMYRTNNASRALEDIF----IRSGIPY 420

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463
                    +   I+D++A  R + + +D +S   ++  P     +     I     +  
Sbjct: 421 KVVGGTRFYERREIRDMVAYLRILDNPDDTVSLRRIINVPKRAIGDKAQGHIALHAENHG 480

Query: 464 ETVYEYIQKFANCGISKFQ--------HVIKYIHELIHIAQFCS--------PHDFFTLI 507
            +  + +       +                 +  + +                +  + I
Sbjct: 481 ISFGKALADVPRGDVPGLGTRAINAVTKFNDMMEGIRNQIPSMRDEVTGQPDLGELLSAI 540

Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQE--------------- 549
           L A   + +  +    +    +D L+E ++        + + L                 
Sbjct: 541 LDATGYKAELENSNDPQDGARLDNLNELVSVAREFTSEAANQLAASGADAVDPSELVEEG 600

Query: 550 ------LISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + LE+           +     V +MT+HTAKGLE PVVFL       F H 
Sbjct: 601 EAAPGSLQAFLEKVSLVADADQIPDSETGVVTMMTLHTAKGLEFPVVFLTGWEDGQFPHM 660

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                       E  RL YVG+TRA +Q
Sbjct: 661 RSLGDP----------------------------------KELSEERRLAYVGITRAREQ 686

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L + +    S             + +   +    ++    +S+    W   ++       
Sbjct: 687 LYLTRAILRSAWGNPVTNPASRFLGEVPEDLINWRREDSDSSL-TGAWGEDDYQYGRSYG 745

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                  +       +   +   SP +          P
Sbjct: 746 RDWSGWGSGGSRGGSRGARRAASSPSQRTGKPAATSMP 783


>gi|260760725|ref|ZP_05873068.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671157|gb|EEX57978.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 450

 Score =  297 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 132/444 (29%), Positives = 201/444 (45%), Gaps = 25/444 (5%)

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
            G E  D++DEF N+ L  E+     LQ  +  LE   P IKR      +EVRIMT+H A
Sbjct: 1   MGPEAGDIIDEFQNYALSAERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTMHAA 60

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKH 638
           KGLE  VVFLVD GS V++     K+       D P +   +W P S  +    +  I+ 
Sbjct: 61  KGLEGAVVFLVDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEK 120

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           LK   +EEY RLLYVGMTRA D+LIIC +       + +  TW+ +V D+          
Sbjct: 121 LKNRAEEEYRRLLYVGMTRAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVH 176

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            +T         A       P +     EE          +P     P+K +   P  L 
Sbjct: 177 PVTGV-------AARRYRKTPRSFIEINEEDQAGATSLPPLPHDYRQPMKAEPGLPRPLA 229

Query: 759 PSTIDTKGKTNLESLLS------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
           PS      + + E  L                   RG  IH LLQ +  +   KR++   
Sbjct: 230 PSGASALIEADEEPPLDLSSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAA 289

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG 866
            Y  + A  WP  E      S+  +L++P      +  S  EV+V G I+   +D  +SG
Sbjct: 290 DYLARIAADWPDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSG 349

Query: 867 RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
           +ID+IS+ +  + I +YKT+   P+ +E +P  + AQL++Y ++L+  YP + +   L++
Sbjct: 350 QIDRISVDESRVLIVDYKTNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLF 409

Query: 927 VSEPKVFIIPQNKLNKAFAEISTK 950
              P + ++P   L+ A   +   
Sbjct: 410 TEGPFLLLVPDAVLDDAMGALKDT 433


>gi|183601527|ref|ZP_02962897.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190974|ref|YP_002968368.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196380|ref|YP_002969935.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219133|gb|EDT89774.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249366|gb|ACS46306.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250934|gb|ACS47873.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793963|gb|ADG33498.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 939

 Score =  297 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 105/653 (16%), Positives = 209/653 (32%), Gaps = 117/653 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TYKMFKSTLASLTLAKYLNAHYE 138
           K    + I  +  D K +L  +     +    F     +  F        +   + A Y+
Sbjct: 176 KRFTPRSILARISDYKNQLTDASTALAQYAPDFKPGMRHYSFGQIGDPEPVYAVVYAEYQ 235

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                   +DF+DLI+ T +LL+ +     +      +  +IL+DE QDT+  Q+ ++R 
Sbjct: 236 YRLALANAVDFDDLIVRTVELLRTQPH---VAEYYRHKFRYILVDEYQDTNHAQYVLVRE 292

Query: 199 LTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           L         D    +   S P  +  VGD  QSIY+F GA+ + +   ++         
Sbjct: 293 LAGVDAHEPSDPMATEAGKSGPAWVTVVGDSDQSIYAFRGADIRNIQDFEKDFP------ 346

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   + V +     +                        LW
Sbjct: 347 --DARTIMLEQNYRSTQTILDAANAVIAHNSARKPKK---------------------LW 383

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +          +   + +         +A + A  IA  I ++            + +
Sbjct: 384 TAL------GEGDKIIGYAA--------DTAQLEAHWIAQQILHLHEE---------KGL 420

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ ++ R    +  +            I           +   +KD +A  + I++ 
Sbjct: 421 PYSDMAIMYRANAQSRSLEEGL----IQAHIPYQLIGGTKFYERREVKDAIAYLQAIVNP 476

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN------CGISKFQHV 484
            DD++   +L  P          ++        +T +  I++  +         +  +  
Sbjct: 477 ADDINMRRILNVPKRGLGTRAESQLTLFANEHNQTFWWAIEQLEDIEGMSARTANAVRAF 536

Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
            + +  L   A      P +    +L      +        +    ++ L +  +     
Sbjct: 537 RELMTSLRTFAGEHDSKPSEIVAQVLEQSHMLELLRKSEDPQDESRVENLSQLQSVAAEF 596

Query: 540 EQNSYS-SLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           EQN+   +L   +        + +      +  +V +MT+HTAKGLE P+VFL       
Sbjct: 597 EQNTPDTTLAGFLETTALVADSDQLPGEGHDSGKVTLMTLHTAKGLEYPIVFLTGMEQGT 656

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H                                             E  RL YVG+TR
Sbjct: 657 FPHS----------------------------------RAMENMDELSEERRLAYVGITR 682

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           A  +L + + +  +   + ++      + +   +    K+ +      +  W 
Sbjct: 683 AKRRLYLTRAAVRAQWGRQSEMMPSQFLDEIPDSLIDWKRREAGMERMRSGWR 735


>gi|121601965|ref|YP_989213.1| putative DNA helicase II [Bartonella bacilliformis KC583]
 gi|120614142|gb|ABM44743.1| putative DNA helicase II [Bartonella bacilliformis KC583]
          Length = 816

 Score =  297 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 114/619 (18%), Positives = 191/619 (30%), Gaps = 108/619 (17%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + L   Y+   K     DF DL+++   + +       I  +   +  +IL+DE QDT
Sbjct: 208 VGRKLYHSYQNRLKSLNACDFGDLLLHPIHIFQHNPD---ILREYQDKFRYILVDEYQDT 264

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+  +R L +          S   L  VGD+ QSIY + GA+   +LR ++      
Sbjct: 265 NTAQYLWLRLLAQSST------KSQVNLCCVGDDDQSIYGWRGAKIDNILRFEKDFP--- 315

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   II L  ++RST+ IL     + S  +   G +  S                 
Sbjct: 316 -----PAKIIRLERNYRSTSHILKTASHLISHNQGRLGKTLFS----------------- 353

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                      S     +    + +DS  +        R I   I     +    +    
Sbjct: 354 ---------DQSNNEETKVKIHAAWDSEEES-------RAIGKEIEQTQQSGHSLNQ--- 394

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  I +LVR              L     ++          + + I+D MA  R +
Sbjct: 395 -------IAILVRASFQMREFEDRFVAL----GLNYRVIGGPRFYERMEIRDAMAYLRVV 443

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------F 481
           +   DDL+F  +L +P        +  +    R     ++    +       K       
Sbjct: 444 VQPADDLAFERILNTPKRGLGNAALRHLYNSARARAIPLFAAAAEIIETDDLKPKACSAL 503

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           + VI+  H    + +     +    IL        +      E    L+         E+
Sbjct: 504 RSVIENFHRWQDMLKHTPHTELAETILDDSGYIAMWQEDRSPEAPTRLENLKEMIRSMEK 563

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 ++L S LE     +    + N + V IMT+H+AKGLE   VFL      +F H+
Sbjct: 564 -----FEDLHSFLEHVSLVMDADSNENMDAVNIMTLHSAKGLEFDTVFLPGWEEGLFPHQ 618

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                      EE  RL YVG+TRA   
Sbjct: 619 RSLDEGGRLG--------------------------------LEEERRLAYVGITRAKKH 646

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L I   SN               + +       V  I+ +           +   H+  +
Sbjct: 647 LHIWFVSNRRIHGLWQSTLPSRFLDELPEQHIEVADIETSYGGYGQPRFRKQDPFHNNYS 706

Query: 722 TPLEREETIKQLMDEQKIP 740
           TP  +     Q    +   
Sbjct: 707 TPGWQRAQQNQTEATRNNW 725


>gi|295692389|ref|YP_003600999.1| ATP-dependent DNA helicase pcra [Lactobacillus crispatus ST1]
 gi|295030495|emb|CBL49974.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus ST1]
          Length = 748

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 127/774 (16%), Positives = 243/774 (31%), Gaps = 145/774 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMREREQKLLGPAANDIWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106
           F  L    L +            I   +  L                   +  L    + 
Sbjct: 90  FHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILAAISNG 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D      M  ++     +A  +   Y+   +++ ++DF+DLI+ T  L KK    
Sbjct: 150 KNDLLD--PEAFMQSASSPFEKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKD--- 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           + + +    +  ++L+DE QDT+  Q+E+  +L   +          + +  VGD  QSI
Sbjct: 205 SEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + ++  ++  +K           ++L  ++RST  IL+  + V    +N + 
Sbjct: 255 YGWRGANMENIMNFEQDYKKY------DVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW         Q + Q+ ++        +       A
Sbjct: 309 KN---------------------LW-------TDQGDGQKVTYYQAQSGDDE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I   I   +         K +    KD  +L R    +  +            I    
Sbjct: 334 HYIISKIQEEV---------KDKKRAYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  D   IKD+MA  + + +  D +S   ++ +P        + K+ T   E    
Sbjct: 381 VGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLITFADENHYN 440

Query: 467 ------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                 +            K       + + I  AQ  +       IL          + 
Sbjct: 441 ILDAMGHVAESSINTRAAKKLSDFGTKLRDAITYAQNGTVTGLTEKILTDFDYTDALRAE 500

Query: 521 FGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
              E    ++ LDEFL+ T R       E++  + L + ++E+               N+
Sbjct: 501 NTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFLAEVSLLSDQDDLDED--DNQ 558

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F  +                              
Sbjct: 559 VALMTLHAAKGLEFPVVFLIGMEDGLFPLQ------------------------------ 588

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC------KHSNTSNEKKSNQRTWYDMV 685
                  +  +  EE  RL YVG+TRA  +L +        +    N   S      D  
Sbjct: 589 ----RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQ 644

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                 +E+++   + +S  K        +          ++ +     + +  
Sbjct: 645 DLHKEENEKLQSSFIQSSFEKQTAPFARKAERARAEVYTAKKASGAIGAERKGW 698


>gi|290967937|ref|ZP_06559487.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str.
           28L]
 gi|290782076|gb|EFD94654.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str.
           28L]
          Length = 738

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 109/579 (18%), Positives = 192/579 (33%), Gaps = 119/579 (20%)

Query: 107 FIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
             + ++   T   +    A         +   YE+  K++  LDF+DL+     LLK+  
Sbjct: 144 ISEAKNLLYTASEYSRQAADFYKQKVAEVFRLYEQKLKESNALDFDDLLSYAVRLLKED- 202

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             A IR K  Q   +IL+DE QDT+  Q+ + + L E +          R +  VGD  Q
Sbjct: 203 --AGIREKYQQRFQYILVDEYQDTNRAQYLLTKILAEKW----------RNICVVGDADQ 250

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY++ GA+ + ++   R             + I+L  ++RST  IL   + V    E  
Sbjct: 251 SIYAWRGADIRNIIEFTRDY--------GDAATIKLEQNYRSTKTILQAANAVIENNEER 302

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                                    LW       +++   +   + +  +          
Sbjct: 303 PQKV---------------------LW------TENEEGKKIIHYAAQTEHDE------- 328

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A  +A  I N                   D+ +L R    + ++          + +  
Sbjct: 329 -AEYVAGCIYNRHEIGGE---------PYGDMAILFRTNAQSRVLEEKL----MRHAVPY 374

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463
                    D   +KD++A  R + +Q+D +S + ++  P  N  +  + KI        
Sbjct: 375 TMVGGTKFYDRKEVKDVLAYLRLLQNQQDSVSLLRIINVPKRNIGKTTLEKIGAYAEDRQ 434

Query: 464 ETVYEYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            + +  + +     I+             + +L   A   +       +L          
Sbjct: 435 ISFFMALTEAEEIDITARAKRSIADFTALMCDLAEKATQLNVFSLLEAVLHDTGYAALLE 494

Query: 519 SRFGNE-----VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEV 572
               +E         + E L+      Q +    LQ+ +  +           S N + V
Sbjct: 495 KEAAHEVQGESRKANVGELLSVAKDYLQTNEDGNLQDFLENVALVSDVDSF--SENDSNV 552

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFLV     +F +                                
Sbjct: 553 TLMTLHAAKGLEFPVVFLVGMDEGLFPN-------------------------------- 580

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                 +  +  EE  RL YVG+TRA  QL +      +
Sbjct: 581 --ARTLMSTAAVEEERRLAYVGITRAERQLYVTNAVTRA 617


>gi|160884387|ref|ZP_02065390.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483]
 gi|156110126|gb|EDO11871.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483]
          Length = 792

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 209/659 (31%), Gaps = 125/659 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y +  ++   +DF+DL++ T  L +       +  +   +  ++L+D
Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPE---VLARYRDQFRYVLVD 228

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ +Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +I
Sbjct: 229 EYQDTNYVQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKI 278

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E     +  S            
Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +A  I+ +       
Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 351

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       I               IKD++A
Sbjct: 352 -----YRYGYADFAILYRTNAQSRIFEEALR----KRSIPYKIYGGLSFYQRKEIKDVIA 402

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI +       +++  + +          
Sbjct: 403 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATDHGVSLWAALCEPLSYGLDINK 462

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +K Q   + I   I      + ++  T I+               E     + ++E 
Sbjct: 463 GTHAKLQGFRELIEGFIVDQADKNAYEIGTNIIRQSGIINDVCQDTSPENLSRKENIEEL 522

Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N         + E N   SL + +SE+           + +  ++ +MTVH+AKGLE  
Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 581

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   +          K    +    + D   +  ++      +    
Sbjct: 608 ERRLFYVAITRAEEHCYLSFAKTRFRYGKMEFGSPSRFLRDIDVHYLQLPHEAGVSRAVD 667

Query: 707 DEWIAYEWSTH----HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
           +    +            +       +      E+   + +   +  ++ +   ++PS+
Sbjct: 668 EGAGRFRREIEGGFTRSASPSRAPFGSTSSEQRERPKAQIIAPSVPRNLKKVSTVSPSS 726


>gi|288553536|ref|YP_003425471.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4]
 gi|288544696|gb|ADC48579.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4]
          Length = 1135

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 148/949 (15%), Positives = 314/949 (33%), Gaps = 103/949 (10%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ++ E  +K    L    +        L+          + +            E    L 
Sbjct: 215  KTVEAFHKAALDL----IPQFPSAEGLTKAQAGHVDRLQ-EAFLSPPSPSGPNEYMDWLI 269

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--- 127
                 +          ++  +  P L +  ++                      + L   
Sbjct: 270  GVMPKRT--------DKKWQEAIPALFQLFEEHWKPLKDDWKAVGGEVEIDEAASLLLGR 321

Query: 128  --TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               L    +  Y+  K+   V+DF DL      LL+ ++    I+    ++  H+L+DE 
Sbjct: 322  FIDLLCDFHLAYKREKELRGVVDFSDLQQKAVSLLENKE----IQEACQKQFRHMLVDEF 377

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT+ +Q E++  +            +P   F VGD KQSIY F GA  + +   ++   
Sbjct: 378  QDTNRLQLEMLERI------------NPSYRFIVGDTKQSIYRFRGANVRLMNELEQD-- 423

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                   +    IE+ +++R+   I+  V+ +F             T      ++R    
Sbjct: 424  ---AVEQENAEAIEMNINYRTCKPIIDGVNALFQSAMTDHITESYQTRYAALSANR---- 476

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI--GTDTIF 363
                              P Q+       +  +    +     +A+ I+ MI      +F
Sbjct: 477  --------------EAEQPDQKQMELLLLNKEETDEEAGSYEALAHRINEMITSQQPRVF 522

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                 +    KD+ VL+  R D   +        +   I           +   I D + 
Sbjct: 523  KGESWQAPAFKDMAVLIPARTDLLKLERAF----SKQNIPYTVYGGIGFYERQEIIDFLT 578

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF---------- 473
            L R++    +D+  + +L+SPL   + +D   I  Q+  T++  +Y+ +           
Sbjct: 579  LLRWMNRPFEDVYVLSLLRSPLIGLTMNDFVTIAKQKEATQSFADYLYQLSESMPQTGLA 638

Query: 474  ------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG-RQQFISRFGNEVI 526
                  A   +     + +++   +  +   SP + F  ++          I   G + +
Sbjct: 639  DSSDLPAQQILDAALKLKEWLLNYVPFSIKGSPGETFDRMIKETGLVHSLLIQSNGLQKV 698

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA-----NHNEVRIMTVHTAK 581
              +++ +      EQ+   SL+E+I  +++      +   A       + V IMT+H +K
Sbjct: 699  KNVEKLIQMI---EQSHLRSLEEIIHFIDERMALNDKEGEAEMERTEGDAVNIMTIHASK 755

Query: 582  GLESPVVFLVDTGS---QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            GLE P+V+L                     +    ++    +     K        + + 
Sbjct: 756  GLEFPIVYLPQLERSVQGDKGSVRFDAKLGIVWSLEEETDNLEARPKKLVTPGFELVKEA 815

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                ++EE  RL YV  TRA D L++    N    KKS      +        D      
Sbjct: 816  AGLESEEESKRLFYVAATRAKDYLVMIG--NGDGAKKSWLHLIEEARDCGPLEDYITVVN 873

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            +++  +           T       +    ++ ++M     P++ +      +NE   L 
Sbjct: 874  EISEQLPHHAENHLYKGTELAAKKEVLYPLSVSEIMTFIHQPEEYYEKYVLGVNESRRLR 933

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
             S  D   +T ++ +         G ++H+  + +       ++    +    +     A
Sbjct: 934  -SDADADQETRVQQV----DPAVVGTLVHRACE-LRDYGFGAQEAVTEAMNYVDELNDTA 987

Query: 819  KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI 878
                +    ++ L+E    + A   +  + V              + G ID++      +
Sbjct: 988  SVKVSYEQEVSELMET--YSEAQQTELGTPVENEWSFATEIAGAEVIGEIDKVVERDGCL 1045

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             I ++KT+       E +   +  QL +Y+   +      ++  + +YV
Sbjct: 1046 HIIDFKTNRIKRSGSEWLA-VYDVQLYLYKMAYEQ-ETGHTISTMSLYV 1092


>gi|260174597|ref|ZP_05761009.1| ATP-dependent DNA helicase [Bacteroides sp. D2]
 gi|315922861|ref|ZP_07919101.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696736|gb|EFS33571.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 792

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 97/659 (14%), Positives = 207/659 (31%), Gaps = 125/659 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y +  ++   +DF+DL++ T  L +       +  +   +  ++L+D
Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPE---VLARYRDQFRYVLVD 228

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +I
Sbjct: 229 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKI 278

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E     +  S            
Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +A  I+ +       
Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 351

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       I               IKD++A
Sbjct: 352 -----YRYGYADFAILYRTNAQSRIFEEALR----KRSIPYKIYGGLSFYQRKEIKDVIA 402

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI +       +++  + +          
Sbjct: 403 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATDHGVSLWAALCEPLSYGLDINK 462

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +K Q   + I   I      + ++  T I+               E     + ++E 
Sbjct: 463 GTHAKLQGFRELIEGFIVDQADKNAYEIGTNIIRQSGIINDVCQDTSPENLSRKENIEEL 522

Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N         + E N   SL + +SE+           + +  ++ +MTVH+AKGLE  
Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 581

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   +          +    +    + D   +  ++      +    
Sbjct: 608 ERRLFYVAITRAEEHCYLSFAKTRFRYGRMEFGSPSRFLRDIDVHYLQLPHEAGVSRAVD 667

Query: 707 DEWIAYEWSTH----HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
           +    +            +       +      E+   + +   +  ++ +   ++PS 
Sbjct: 668 EGAGRFRREIEGGFTRSASPSRAPFGSTSSEQRERPKAQIIAPSVPRNLKKVSTVSPSN 726


>gi|300088001|ref|YP_003758523.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527734|gb|ADJ26202.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 747

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 113/660 (17%), Positives = 211/660 (31%), Gaps = 125/660 (18%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   +   YE+  + N  LDF+DL++ T  L ++      I  +  +   HI++DE 
Sbjct: 164 LEEIVGRMYEQYEKMLRANNALDFDDLLLKTVFLFQR---RPEILKRYQERYVHIMVDEF 220

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+L+Q+E+++ L   +          R +  VGD  QSIYS+  A+ + V   ++   
Sbjct: 221 QDTNLVQYELVKLLAGHY----------RNIAVVGDPDQSIYSWRAADLRNVFNFEKDFP 270

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
            R        S+  L  ++RST+ IL     + +  +  + +                  
Sbjct: 271 DR--------SVHYLEQNYRSTSKILEAASGIIAHNQKRKDIK----------------- 305

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW           + +       ++   +       A+ +      +  +      
Sbjct: 306 ----LW-------TENGSGEPLCILEAYNEQEE-------AQMVVREAEKLSASGQ---- 343

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +  D+ VL R    + ++          Y +           +   +KDL+A  
Sbjct: 344 -----YKLSDMAVLYRTNAQSRVLEEYF----IRYGVPYKLVAGTRFYERREVKDLIAYF 394

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGIS----- 479
           R I +  D +S + ++  P     +  I  +    R +  +++E +   A  G       
Sbjct: 395 RLIHNPADSVSLMRIINVPARGLGDKSIADLQNWARGQGLSLFEALAASAGEGEKPPLSA 454

Query: 480 ----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLN 534
                F    + +   I  A   S  + F  IL     R    ++  G E ++ + E   
Sbjct: 455 RAIGAFASFYRMVESFIQAAAEKSLTELFDEILERTGYRAFLEAQPDGQERMENIAELHT 514

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              +         + L   LE                 V ++T+H AKGLE PVVF+V  
Sbjct: 515 VAEQFAALPPG--EALSPFLESVSLVSDIDNLDETEGGVTLITLHQAKGLEFPVVFIVGL 572

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             +V  H                                         +  EE  RL YV
Sbjct: 573 EERVLPH----------------------------------FRSLDDPAQMEEERRLCYV 598

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           G+TRA ++L + +    +    S        +       E +     T ++ K   +   
Sbjct: 599 GVTRARERLYLLRAFRRNLMGGSMLNDPSRFL-------EAIPNELTTGTLPKAPPVHAR 651

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                P + P               +     S  +    +P  + P     K    +   
Sbjct: 652 TGASSPRSAPPTIGRVGTPSTGRPPVSAGGPSQTRVPAGKPA-VAPYKTGDKVAHPIFGD 710


>gi|167957596|ref|ZP_02544670.1| ATP-dependent DNA helicase PcrA [candidate division TM7 single-cell
           isolate TM7c]
          Length = 702

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 112/547 (20%), Positives = 188/547 (34%), Gaps = 116/547 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+ K+++  LDF+DL++ T +LLK       +R K      +I+IDE QDT+  
Sbjct: 172 EIYKMYEKLKRESNALDFDDLLLETVNLLKNHPE---VRKKWQDHFKYIMIDEYQDTNAA 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ ++  LT          +  + +  VGD+ QSIYS+ GA+ + +L  ++         
Sbjct: 229 QYLIVSLLT----------NDKKNICVVGDDWQSIYSWRGADFRNILNFEKDF------- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++R+T  IL     V                      +   Q   V+++
Sbjct: 272 -SGAQIIKLEQNYRNTGAILEAAQNVIIKNNQRTDK---------KIWTAGNQGDPVEVY 321

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +  + +                          A  IA  ISN + +            
Sbjct: 322 SALDDKSE--------------------------AAWIANVISNKVESGE---------Y 346

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    +  I        N   I +         D   IKD+MA  R     
Sbjct: 347 NFDDFAILYRTNSQSYTIEQAL----NQRSIPLNIVGGTRFFDRAVIKDIMAYVRLCYQP 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D  SF+ +   P        + K  + + +TE       K +    +        + EL
Sbjct: 403 NDMSSFMRIANVPSRGVGPTSLAKFISWQGQTEMDIISALKQSGEATTITARARNALQEL 462

Query: 492 --------IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
                     I    +P D    ++     R   +     +  D  +E+LN  +  E   
Sbjct: 463 GCKLQIIRSEILNNTAPSDILEKVIDKTGYRDYIL-DGSPQAEDN-NEYLNTLID-ESRP 519

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           Y+ ++   + LE+          +    V +MT+H AKGLE PVVF+      +  H   
Sbjct: 520 YADIE---TYLEEVSLMSSSDLQSEKGYVTLMTLHAAKGLEFPVVFMSGMEEGILPHSRT 576

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
              +                                     EE  RL YVGMTRA ++L 
Sbjct: 577 LDGNP---------------------------------DDLEEERRLCYVGMTRARERLY 603

Query: 664 ICKHSNT 670
           +   ++ 
Sbjct: 604 LSHSASR 610


>gi|317482225|ref|ZP_07941247.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916363|gb|EFV37763.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA]
          Length = 884

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 117/727 (16%), Positives = 220/727 (30%), Gaps = 123/727 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +     +I      L+         +  
Sbjct: 75  AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123
             L     T+     K    + I     DLK  L   ++        F        F + 
Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A YE        +DF+DLI  T +LL+       +         +IL+D
Sbjct: 189 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245

Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L                  S P  +  VGD  QSIY+F GA+ + 
Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++               I L  ++RST  IL   + V S  E  +           
Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +          +     +  +       A   A+ +A  I+ +
Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                         I   D+ ++ R    +  +         +              +  
Sbjct: 383 HAEA---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471
            IKD +A  + +++ +DD++   +L  P     +      +   R    + +  +     
Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489

Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
            +      +  +     +  L     A    P +    +L     R +       +    
Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583
           ++ L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKGL
Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL       F H                                         + 
Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +E  RL YVG+TRA  +L + + +  S   ++        + +   +    K+ +    
Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695

Query: 704 INKDEWI 710
             +  W 
Sbjct: 696 RMRASWE 702


>gi|189439490|ref|YP_001954571.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|312132895|ref|YP_004000234.1| uvrd2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688951|ref|YP_004208685.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           infantis 157F]
 gi|189427925|gb|ACD98073.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|311773868|gb|ADQ03356.1| UvrD2 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320460287|dbj|BAJ70907.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 900

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 117/727 (16%), Positives = 220/727 (30%), Gaps = 123/727 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +     +I      L+         +  
Sbjct: 75  AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123
             L     T+     K    + I     DLK  L   ++        F        F + 
Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A YE        +DF+DLI  T +LL+       +         +IL+D
Sbjct: 189 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245

Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L                  S P  +  VGD  QSIY+F GA+ + 
Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++               I L  ++RST  IL   + V S  E  +           
Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +          +     +  +       A   A+ +A  I+ +
Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                         I   D+ ++ R    +  +         +              +  
Sbjct: 383 HAEA---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471
            IKD +A  + +++ +DD++   +L  P     +      +   R    + +  +     
Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489

Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
            +      +  +     +  L     A    P +    +L     R +       +    
Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583
           ++ L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKGL
Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL       F H                                         + 
Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +E  RL YVG+TRA  +L + + +  S   ++        + +   +    K+ +    
Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695

Query: 704 INKDEWI 710
             +  W 
Sbjct: 696 RMRASWE 702


>gi|23465464|ref|NP_696067.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705]
 gi|239622010|ref|ZP_04665041.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|23326117|gb|AAN24703.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705]
 gi|239515201|gb|EEQ55068.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 881

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 117/727 (16%), Positives = 220/727 (30%), Gaps = 123/727 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +     +I      L+         +  
Sbjct: 75  AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123
             L     T+     K    + I     DLK  L   ++        F        F + 
Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A YE        +DF+DLI  T +LL+       +         +IL+D
Sbjct: 189 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245

Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L                  S P  +  VGD  QSIY+F GA+ + 
Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++               I L  ++RST  IL   + V S  E  +           
Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +          +     +  +       A   A+ +A  I+ +
Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                         I   D+ ++ R    +  +         +              +  
Sbjct: 383 HAEA---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471
            IKD +A  + +++ +DD++   +L  P     +      +   R    + +  +     
Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489

Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
            +      +  +     +  L     A    P +    +L     R +       +    
Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583
           ++ L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKGL
Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL       F H                                         + 
Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +E  RL YVG+TRA  +L + + +  S   ++        + +   +    K+ +    
Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695

Query: 704 INKDEWI 710
             +  W 
Sbjct: 696 RMRASWE 702


>gi|42520776|ref|NP_966691.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410516|gb|AAS14625.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 638

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 102/557 (18%), Positives = 184/557 (33%), Gaps = 121/557 (21%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 A  +   Y+E  K    +DF DL++    L  +      +      +  ++++D
Sbjct: 162 RPVYVTALKVYHQYQERLKFLNSVDFGDLLLYNIQLFNQ---KTEVLSYYQNKFKYVMVD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ IQ+  ++ L ++             +  VGD+ QSIYS+ GAE + +L+    
Sbjct: 219 EYQDTNAIQYLWLKYLAKE----------HSNICCVGDDDQSIYSWRGAEVENILKFSDD 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
            +            ++L  ++RST+ IL     V +  +                     
Sbjct: 269 FKN--------AKTVKLECNYRSTSHILATASYVINHNKTRLEKK--------------- 305

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 LW        +    ++ +    +D   +       AR I+  I  +       
Sbjct: 306 ------LW-------TTNIEGEKVNLIKLWDGKAE-------ARFISEQILKL------- 338

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +  DI VLVR    T ++          Y I           +   ++D++A
Sbjct: 339 -----NKYRFSDIAVLVRATFQTRVLEEYF----IKYSIPYKIISGVKFYERQEVRDIIA 389

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANC 476
             R + +  DDL+F  ++  P  +     + KI  T +    + +E         +    
Sbjct: 390 YLRLVTNNNDDLAFERIVNRPKRSIGATTLKKIYTTAQDNKISFFEAAKILVNSNQVTER 449

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLN 534
                   +  I     I      H+F  ++       +   +    G   I+ + E ++
Sbjct: 450 IKLSLNDFLNKIKAWEEIVSVKPLHEFVKIVANQSGYIEMLENEEVTGLARIENVKELIS 509

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                +           + LE     ++  +  N + V +MT+H AKGLE P VFL    
Sbjct: 510 SLKNFDNA--------TTFLEHISLVMEVDNMNNDDTVYVMTLHAAKGLEFPCVFLPGWE 561

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F H+                                           EE  RL YVG
Sbjct: 562 EGLFPHQRSFDDKSG--------------------------------KALEEERRLAYVG 589

Query: 655 MTRASDQLIICKHSNTS 671
           +TRA ++LII       
Sbjct: 590 ITRAKERLIISCADRRE 606


>gi|304403945|ref|ZP_07385607.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9]
 gi|304346923|gb|EFM12755.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9]
          Length = 1338

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 137/824 (16%), Positives = 269/824 (32%), Gaps = 82/824 (9%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQ 58
            LS  +  E    D+            + ++L+     P           K    L  A  
Sbjct: 217  LSATDWVEAARADVHLALQGAAGLFEQALALTRLPAGPAPYGDTLDEDRKVVAQLANAVA 276

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            ++  E      +S    +    + +   +++ +++ +L++K K           R    +
Sbjct: 277  SEPWEAWPEAFASASFGRLKAMRGDEFDKQLQERAKELRDKAKTLIAGLTDKWFRRTPEQ 336

Query: 119  MFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK------KRDV 165
            + +          A   L       Y+E K++  +LDF DL  +   +L+      ++++
Sbjct: 337  LREDLEELAPLMEALSELVIAFGHRYDELKREKGLLDFSDLEHSCLRILRAAESSPEQEL 396

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             +    +  Q    IL+DE QDT+ +Q  ++  +             P   F VGD KQS
Sbjct: 397  PSAAALEYQQRFVEILLDEYQDTNTVQEAIVSLIA-----------KPGNRFMVGDVKQS 445

Query: 226  IYSFHGAEPKRVLREKRIN-----------QKRATNAGQKFSIIELPLSFRSTADILTVV 274
            IY F  AEP   L + +                 + A Q    I+L  +FRS A+++  V
Sbjct: 446  IYRFRLAEPNLFLTKYKTYVPADQIGETADSPSISTASQSGVRIDLARNFRSRAEVVDGV 505

Query: 275  DKVFSIPENA--QGLSEDSTTTIRHRSSRI----GQVGTVQLWEQVVS------------ 316
            + +F          L  D    +   ++            +L                  
Sbjct: 506  NGIFRAVMRETVGELEYDERAELVCGAAYPSPDRADRFAAELVLVDRKGTSDVSGMDAGE 565

Query: 317  --QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG---KKRVI 371
                +           +      +  +A + AR IA  I  ++       +G   + R +
Sbjct: 566  SLADEDSSGDADGEGLTPAMEAAELQTAQLEARVIARRIRELMDEGYPVWDGRRKETRPL 625

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            Q +DI++L+R  +    I          + I           D   ++ +M+L R I + 
Sbjct: 626  QFRDIVILLRATQQWAPI---MIEELQTFDIPAYAELGTGYFDATEVEVMMSLLRIIDNP 682

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-----ETETVYEYIQKFANCGISKFQHVIK 486
              D+     L+SP+F  + +++ K+          E        +   +   +K +  + 
Sbjct: 683  YQDIPLAGALRSPIFGLTAEELAKVRIALRSGSFYEAIRYSASAEALPSGVQAKLEQFLS 742

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYS 545
             +     +A+  S  +   L+               G +    L   ++   + E  S+ 
Sbjct: 743  QLDRWRELARRGSLVELLALLYRETGYYDFVGGLPGGAQRQANLRALMDRARQYEATSFR 802

Query: 546  SLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             L   +  +E+           RA     + VRIM++H +KGLE PVVF+   G      
Sbjct: 803  GLFRFLRFIERMRDTGGDLGSARALGEQEDVVRIMSIHKSKGLEFPVVFVAGLGKMFNMQ 862

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                   +   L   P       +          + + ++     E  R+LYV +TR  +
Sbjct: 863  DLNAPFLLHKELGYGPKFIDAQLRVSYPTLPYLAIGRRMRMELLAEEMRVLYVAVTRPKE 922

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            ++I+    + +  K ++     D+      +     +  L              +     
Sbjct: 923  KMILIGSVSDAEAKLASWSGAADLEGRLSDDRLAAARAYLDWVGPLAVGSGMLTTISAEG 982

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
             T L   E I  + D++            D   P     S    
Sbjct: 983  VTALNEVEQI--VSDDRAGADGARHVPTLDAVRPPASEQSAAAA 1024



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 72/227 (31%), Gaps = 16/227 (7%)

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
             ERE  I    +   I   L     N      + +      + +              RG
Sbjct: 1112 AEREALIYPDAENPAIAPMLGDNRFNGAPASAVSSAEDYTFRLRRPRFMEERALTAAERG 1171

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAM 841
             + H  +Q I             +     A+     +  +++   +I+   E+ +    +
Sbjct: 1172 TVSHLFMQHIPLNGPIDAALLQQTLDGLIARHIMTAKQASVIDLPAISSFFESAIGRRLL 1231

Query: 842  SCDS-YSEVSVSGKINC-----------PKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
            S      E+  S  +               + I+I G +D +   ++ I + +YKT    
Sbjct: 1232 SARWMKRELPFSCALPASRIYEQQADLTDDEPILIQGVVDCLFEDEEGIVLLDYKTDQVY 1291

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935
              + E     H  QL +Y + L+     + +  C + ++S      +
Sbjct: 1292 GGQWEEAAERHRFQLDVYAEALE-LSIGRPIEECHVHFLSGGTTVRL 1337


>gi|227499501|ref|ZP_03929608.1| ATP-dependent DNA helicase PcrA [Anaerococcus tetradius ATCC 35098]
 gi|227218380|gb|EEI83631.1| ATP-dependent DNA helicase PcrA [Anaerococcus tetradius ATCC 35098]
          Length = 731

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 103/579 (17%), Positives = 182/579 (31%), Gaps = 118/579 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YEE K     LDF+DLI     L  K            ++  ++ +DE QDT+  
Sbjct: 169 EVYKKYEEKKFYYNALDFDDLIDKLLYLFYKD---KECLEYYQRKFEYVFVDEYQDTNNS 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E+I+                  +  VGD  QSIYSF GA    +L  +   +      
Sbjct: 226 QYELIKYFAGF----------HNNVTVVGDIDQSIYSFRGANISNILNFENDFKNS---- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RST +IL   +++       +  +                     LW
Sbjct: 272 ----ELIKLEQNYRSTGNILETANQLIENNTERKEKN---------------------LW 306

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                         +  + S      +       A+ +   I N++              
Sbjct: 307 -------TENNQGDKVVYKSNSVESEE-------AKYVLDNIKNLMAEG----------F 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    +     +         I+          D   IKDL+A  + I++ 
Sbjct: 343 SPHDFAILYRTNAQSRPFEEVL----MKSLINYKVIGGLKFYDRKEIKDLVAYLKIIVNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGI--SKFQ----HV 484
           +D+LS   ++  P        I ++ T       ++ + +       +   + +      
Sbjct: 399 KDNLSLKRIINEPKRGIGNKSIEELETIANRHNISMLDLMIDKEFNYLLTDRLKKLTNKF 458

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
              + E+          D    +L      +   S +  E    ID ++EF++     E+
Sbjct: 459 YGPLKEIFDNIDNYKIVDLIDDVLDKSSYLKMLESSYSVEDRSRIDNINEFISSAAEYEE 518

Query: 542 NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +      +   LE            +    V +M++H AKGLE PVVF+V     +F  
Sbjct: 519 ENPE--ANIYDYLENLSLLSDLDKTESGEECVSLMSMHAAKGLEFPVVFVVGMDEGLFPG 576

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                       +   EE  RL YV +TRA +
Sbjct: 577 KRSID-----------------------------------EGNIEEERRLFYVAITRARE 601

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +L +       N  K         + +        +KI 
Sbjct: 602 KLFLTSAQARRNYGKLVYYKPSRFIDEIIDKLRLEEKIA 640


>gi|325676354|ref|ZP_08156033.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
 gi|325552915|gb|EGD22598.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
          Length = 824

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/680 (14%), Positives = 188/680 (27%), Gaps = 137/680 (20%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           I          + +     L   + AHY++  +    LDF+DLI  T  LL+       +
Sbjct: 179 IDPEEAAADADRDSNDLDKLVARVYAHYQQRLRAANALDFDDLIGETVGLLQANP---QV 235

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   H+L+DE QDT+  Q+ ++R L  +          P  L  VGD  QSIY+F
Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYVLVRELVGE-ESDDPYAVPPGELCVVGDADQSIYAF 294

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + +   +R               I L  ++RST +IL+  + V S     +    
Sbjct: 295 RGATIRNIEEFERDYP--------DARTILLEQNYRSTQNILSAANSVISRNTGRREKR- 345

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  +     +   +       A+ +
Sbjct: 346 --------------------LW-------TDSGEGELITGYVADNEHDE-------AQFV 371

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I  ++              +  ++ V  R    +  +  +         I       
Sbjct: 372 ASEIDRLVDAGET---------KFGEVAVFYRTNNSSRALEEIF----IRLGIPYKVVGG 418

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
               +   ++D++A  R + +++D +S   +L +P     +     +     +    +  
Sbjct: 419 TRFYERKEVRDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVSVYAEQKGVGFAE 478

Query: 470 IQKFA---------NCGISKFQHVIKYIHELIHIAQF--------CSPHDFFTLILGAKK 512
             + A                   ++ +  L  +               +    +L    
Sbjct: 479 ALRAAGEGSVPLLNTRSQKAIASFLELLDGLRALMVSTDADGNDLTDIGEVVEGVLDRTG 538

Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRN---------------------EQNSYSSLQ 548
            R++       +    +D L+E ++                          E        
Sbjct: 539 YRRELEVSSDPQDGARLDNLNELVSVAREFSSDARNAAAFAEENAAEGDVVEDEGQPDPG 598

Query: 549 ELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            L + LE+                 V +MT+HTAKGLE PVVF+       F H      
Sbjct: 599 SLAAFLERVSLVADSDQVPDEGEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGD 658

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                              +   E  RL YVG+TRA  +L + +
Sbjct: 659 P----------------------------------AELSEERRLAYVGITRARHRLYLTR 684

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
               S   +         + +   +    ++                             
Sbjct: 685 AIVRSAWGQPVTNPESRFLQEIPADLVNWRREDPGVLGTGGAIGGGRPRGQGYGGGFGGG 744

Query: 727 EETIKQLMDEQKIPKKLFSP 746
                             +P
Sbjct: 745 GAGFGSTGRSGASSPSFGAP 764


>gi|227545941|ref|ZP_03975990.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213575|gb|EEI81424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 910

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 117/727 (16%), Positives = 220/727 (30%), Gaps = 123/727 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +     +I      L+         +  
Sbjct: 85  AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 138

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123
             L     T+     K    + I     DLK  L   ++        F        F + 
Sbjct: 139 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 198

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A YE        +DF+DLI  T +LL+       +         +IL+D
Sbjct: 199 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 255

Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L                  S P  +  VGD  QSIY+F GA+ + 
Sbjct: 256 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 315

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++               I L  ++RST  IL   + V S  E  +           
Sbjct: 316 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 359

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +          +     +  +       A   A+ +A  I+ +
Sbjct: 360 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 392

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                         I   D+ ++ R    +  +         +              +  
Sbjct: 393 HAEA---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 439

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471
            IKD +A  + +++ +DD++   +L  P     +      +   R    + +  +     
Sbjct: 440 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 499

Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
            +      +  +     +  L     A    P +    +L     R +       +    
Sbjct: 500 IEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 559

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583
           ++ L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKGL
Sbjct: 560 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 619

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL       F H                                         + 
Sbjct: 620 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 645

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +E  RL YVG+TRA  +L + + +  S   ++        + +   +    K+ +    
Sbjct: 646 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 705

Query: 704 INKDEWI 710
             +  W 
Sbjct: 706 RMRASWE 712


>gi|71906186|ref|YP_283773.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB]
 gi|71845807|gb|AAZ45303.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB]
          Length = 713

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 104/623 (16%), Positives = 200/623 (32%), Gaps = 114/623 (18%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L S     +    K ++ + +N        +  +        ++
Sbjct: 96  LRAHFREAGLPQTFQILDSA---DQLAMVKRLL-KNLNIDDEKYPPR--ELCHFINAHKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +       ++          + A YE    +  V DF +L++   +LL++ +    +R  
Sbjct: 150 QGVRAAQAEAYDNYTQKRVEIYAEYENQCNREGVCDFAELLLRCYELLQRNE---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             Q    IL+DE QDT+++Q+  ++ L                +FAVGD+ QSIY F GA
Sbjct: 207 YQQRFRQILVDEFQDTNVLQYAWLKLLAG----------GGAHIFAVGDDDQSIYRFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E   +   +R             ++I L  ++RS  +IL   + +        G +    
Sbjct: 257 EVGNMREFERDY--------AGANVIRLEQNYRSHGNILAAANAIIKNNRERLGKN---- 304

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW           + +       +  L +       AR I   
Sbjct: 305 -----------------LW-------TDAGDGEPIRAFEAYSDLDE-------ARFIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  ++                  I +L R    + ++            +          
Sbjct: 334 IRELVRDGN----------SPTQIAILYRSNAQSRVLEHEL----FTKGVPYKVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IK  +A  R + +Q+DD +F+ ++  P        +  +         ++Y    
Sbjct: 380 FERQEIKHALAYLRLLGNQDDDTAFLRVVNFPTRGIGARSLENLQATAHQINSSLYNAAA 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLD 530
                        ++ I  L          +    ++      Q + + + G E ++ LD
Sbjct: 440 SLTGKAGQTVGAFVRLIETLRQETANLPLPEIIEHVVEKSGLAQHYRVEKEGQERLENLD 499

Query: 531 EFLNFTLRNEQNSYSSLQ--ELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPV 587
           E +N       +  +  +   L S L        +         V++M+VH AKGLE  V
Sbjct: 500 ELINAAATFVDDEGAIGEGGALASFLAHASLEAGEHQAGEGQEAVQLMSVHAAKGLEFDV 559

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VF+      +F H++                                      K   EE 
Sbjct: 560 VFISGLEQGLFPHENSVN---------------------------------EGKDGLEEE 586

Query: 648 NRLLYVGMTRASDQLIICKHSNT 670
            RL+YV +TRA  +L +      
Sbjct: 587 RRLMYVAVTRARQRLYVSCAQTR 609


>gi|58696814|ref|ZP_00372342.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225630630|ref|YP_002727421.1| DNA helicase II [Wolbachia sp. wRi]
 gi|58536984|gb|EAL60139.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|225592611|gb|ACN95630.1| DNA helicase II [Wolbachia sp. wRi]
          Length = 638

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 101/557 (18%), Positives = 184/557 (33%), Gaps = 121/557 (21%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 A  +   Y+E  +    +DF DL++    L  +      +      +  ++++D
Sbjct: 162 RPVYVTALKVYHQYQERLRFLNSVDFGDLLLYNIQLFNQ---KTEVLSYYQNKFKYVMVD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ IQ+  ++ L ++             +  VGD+ QSIYS+ GAE + +L+    
Sbjct: 219 EYQDTNAIQYLWLKYLAKE----------HSNICCVGDDDQSIYSWRGAEVENILKFSDD 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
            +            ++L  ++RST+ IL     V +  +                     
Sbjct: 269 FKN--------AKTVKLECNYRSTSHILATASYVINHNKTRLEKK--------------- 305

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 LW        +    ++ +    +D   +       AR I+  I  +       
Sbjct: 306 ------LW-------TTNIEGEKVNLIKLWDGKAE-------ARFISEQILKL------- 338

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +  DI VLVR    T ++          Y I           +   ++D++A
Sbjct: 339 -----NKYRFSDIAVLVRATFQTRVLEEYF----IKYSIPYKIISGVKFYERQEVRDIIA 389

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANC 476
             R + +  DDL+F  ++  P  +     + KI  T +    + +E         +    
Sbjct: 390 YLRLVTNNNDDLAFERIVNRPKRSIGATTLKKIYTTAQDNKISFFEAAKILVNSNQVTER 449

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLN 534
                   +  I     I      H+F  ++       +   +    G   I+ + E ++
Sbjct: 450 IKLSLNDFLNKIKAWEEIVSVKPLHEFVKIVANQSGYIEMLENEEVTGLARIENVKELIS 509

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                +           + LE     ++  +  N + V +MT+H AKGLE P VFL    
Sbjct: 510 SLKNFDNA--------TTFLEHISLVMEVDNMNNDDTVYVMTLHAAKGLEFPCVFLPGWE 561

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F H+                                           EE  RL YVG
Sbjct: 562 EGLFPHQRSFDDKSG--------------------------------KALEEERRLAYVG 589

Query: 655 MTRASDQLIICKHSNTS 671
           +TRA ++LII       
Sbjct: 590 ITRAKERLIISCADRRE 606


>gi|227529820|ref|ZP_03959869.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis
           ATCC 49540]
 gi|227350304|gb|EEJ40595.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis
           ATCC 49540]
          Length = 1286

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 126/716 (17%), Positives = 255/716 (35%), Gaps = 67/716 (9%)

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT-----QEINKKSPDLKE 98
            +  ++ + L  +       +  +        +     K         Q + K    LKE
Sbjct: 264 KSDQEQIRDLITSLDQDQWGDIRAAFQGVKYARMSGGAKKKDPEYETYQSLIKARNGLKE 323

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK---YLNAHYEEAKKKNCVLDFEDLIIN 155
           +LK    ++ +  ++        +      L+      +  Y++AK    VL+F DL   
Sbjct: 324 QLKSLATDYFEYDEQRFRQVANHAAGILNELSAVTIEFSRAYQQAKLNRHVLEFSDLEHY 383

Query: 156 TNDLLKKR-DVSAWI--RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
              +L    D   W+    ++ +    I+IDE QDT+ +Q +++  L             
Sbjct: 384 AYQILTPPADQPDWVTLVNELREHYQEIMIDEYQDTNPLQEKILMQLAS---------PD 434

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
            + LF VGD KQSIY F  A+P   L +    +K     G+    I L  +FRS  ++  
Sbjct: 435 QQNLFMVGDVKQSIYRFREADPTLFLAKYENYRK-----GKGGESIVLAENFRSMQNVTG 489

Query: 273 VVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
             + +F    +     +  D    +++ ++   +    Q+    V  +D+  NP+     
Sbjct: 490 FTNVLFEQLMDRQVGEIDYDKDAHLKYAATYYDENPDNQVTPAEVLLYDANANPKL---- 545

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTP 387
                  ++   +   R +A  I  M+    +  + K    R ++  DI++L R +    
Sbjct: 546 -----PQEDDKLTGELRMVAMRIKQMVTNKELIYDKKTQQMRPVKYGDIVLLERTKNINN 600

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            +      L+    + +  +D         ++ +MAL + I + + D+  V +L+SP+  
Sbjct: 601 TLMEQFNELE----VPLTVHDVESYFQATEVRVMMALLKIIDNPKQDIPLVAVLRSPIVG 656

Query: 448 FSEDDIFKICTQRHETETV------------------YEYIQKFANCGISKFQHVIKYIH 489
            S  ++  I  Q    +                                 K    I+ + 
Sbjct: 657 LSNKELAFIRLQNRRADFYTALTTCQSNFESHHLQQSSALNSDQLTRLQQKLTTFIEQLT 716

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
           E   +AQ  +  +    I               G +    L          EQ+S+  L 
Sbjct: 717 EFRQVAQQQTLVNLIWHIYQETGYLDYVGAMPGGQQRQANLHALYERAHTYEQSSFKGLY 776

Query: 549 ELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +    +E+     +         + N V +MT+H +KGL+ PVVFL++T     +    +
Sbjct: 777 QFTRFIEKMQEHDQDLGVAPTQLDTNTVNVMTIHGSKGLQFPVVFLINTNHHFNNAAVRE 836

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
              + P+      +     +          ++ ++++  + E  R+LYV +TRA  +LII
Sbjct: 837 NAVVDPNSGVGIKVMDQQ-RLVYDTPQRQIILNNIQQGERAEDLRVLYVALTRAEQRLII 895

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
               N +   +     W         N + +      +  +  +WI    + +  +
Sbjct: 896 TASFNETRRGQKLVEAWNGWQKAFQSNQQLIGSQLRISVKSFMDWIGLALARYSKQ 951



 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 81/265 (30%), Gaps = 20/265 (7%)

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWS-THHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
             ++   + ++  ++   D+ +A+ +      + T  +    +K++ ++    +      +
Sbjct: 1015 ADEVGSQSLESPSAKEIDQVLAFRYPHEVATKTTAYQSVTDVKRVFEDPDNREMGQWDYE 1074

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                          D      ++           G   H + Q +    +      +   
Sbjct: 1075 QQRKVKNRGLYLRNDFATPQFIQQGDQSPAATEVGTATHLVFQKLPLNDKEITVKQVQKE 1134

Query: 809  CTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS--YSEVSVSGKINC------ 857
              +     L  +     + +  I    +       ++     + E   +  +N       
Sbjct: 1135 IQQLVKEHLINSAVAPFINMEGIAAFFQTDPGRQIIANGQNYHREEPFAMIMNGHELFKE 1194

Query: 858  ----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPYTHIAQLSIYEK 909
                  + I++ G ID    + + I + +YKT H  PQ    E+  I   +  QL +Y +
Sbjct: 1195 VQARDDERILVHGIIDGYLETPKGITLVDYKTDHINPQYREFELAKITGRYRGQLELYRQ 1254

Query: 910  ILKDSYPNKSLVCLLIYVSEPKVFI 934
             L    P   +   L  V   +   
Sbjct: 1255 ALNIMKPIPVVQMGLYLVELGEFIP 1279


>gi|325125238|gb|ADY84568.1| ATP-dependent helicase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 753

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 122/782 (15%), Positives = 240/782 (30%), Gaps = 135/782 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   +V+  N             + ++   L            
Sbjct: 30  GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89

Query: 66  FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110
           F  L    L +                + Q  ++ + + +   D K+ L +    +    
Sbjct: 90  FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++R  T K ++++       +   +   Y+ + +++ +LDF+DLI+ T  L K    S  
Sbjct: 150 KNRLQTPKQYEASAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 Q+  ++L+DE QDT+  Q+E+ R L + +            +  VGD  QSIY 
Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   +            ++L  ++RST  IL   + V    EN +   
Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         + + ++  +        +        R 
Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +           +  + +D  VL R    +  +            +      
Sbjct: 334 VLAKIKEEVDK---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   IKD+MA  + + +  D +SF  ++  P     +    K+          +Y
Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTAKLAAFADEMGGGIY 440

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E ++       ++    K       +   I  AQ  +  +    IL      +       
Sbjct: 441 EAMRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDFGYIKALKEEEA 500

Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571
                    ++ L EF   T R +    +        L   L +    + +     + + 
Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F                                 
Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEDNIFPLSR----------------------------- 591

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               IK    +  EE  RL YVG+TRA ++L +               +    + +    
Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNSQSRFIGEIKDE 648

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
           D  +       S      +         +    +  +  +       +  +       D 
Sbjct: 649 DLDIVASTAPKSSTSFLDLDRLPFAKKSQAKAAQPAKIHRASKAAGAVGAEKKGWHPGDQ 708

Query: 752 NE 753
            E
Sbjct: 709 VE 710


>gi|116513593|ref|YP_812499.1| superfamily I DNA/RNA helicase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116092908|gb|ABJ58061.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 753

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 123/782 (15%), Positives = 240/782 (30%), Gaps = 135/782 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   +V+  N             + ++   L            
Sbjct: 30  GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89

Query: 66  FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110
           F  L    L +                + Q  ++ + + +   D K+ L +    +    
Sbjct: 90  FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++R  T K ++ +       +   +   Y+ + +++ +LDF+DLI+ T  L K    S  
Sbjct: 150 KNRLQTPKQYEDSAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 Q+  ++L+DE QDT+  Q+E+ R L + +            +  VGD  QSIY 
Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   +            ++L  ++RST  IL   + V    EN +   
Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         + + ++  +        +        R 
Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +           +  + +D  VL R    +  +            +      
Sbjct: 334 VLAKIKEEVDK---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   IKD+MA  + + +  D +SF  ++  P     +    K+          +Y
Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTAKLAAFADEMGGGIY 440

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E ++       ++    K       +   I  AQ  +  +    IL      +       
Sbjct: 441 EAMRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDLGYIKALKEEEA 500

Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571
                    ++ L EF   T R +    +        L   L +    + +     + + 
Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F                                 
Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEDNIFPLSR----------------------------- 591

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               IK    +  EE  RL YVG+TRA ++L +               +    + +    
Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNSQSRFIGEIKDE 648

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
           D  +       S      +     T   +    +  +  +       +  +       D 
Sbjct: 649 DLDIVASTAPKSSTSFLDLDRLPFTKKSQAKAAQPAKIHRASKAAGAVGAEKKGWHPGDQ 708

Query: 752 NE 753
            E
Sbjct: 709 VE 710


>gi|110802763|ref|YP_697370.1| recombination helicase AddA [Clostridium perfringens SM101]
 gi|123342114|sp|Q0SWW4|ADDA_CLOPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|110683264|gb|ABG86634.1| recombination helicase AddA [Clostridium perfringens SM101]
          Length = 1270

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 125/659 (18%), Positives = 231/659 (35%), Gaps = 57/659 (8%)

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                R   +    +  +   +K   T+ +  +S  + E L+ +  E           KM
Sbjct: 278 GASFGRLKSVRKASVDDEKALEK---TKSLRDESKKIIENLRDNVFETSLEEAVLGMKKM 334

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKID 174
           +        L    +  Y + K++  +LDF DL     ++L  +D       + +  +  
Sbjct: 335 YPLMKCLSGLIIEFSNRYRDKKREKDILDFNDLEHLCLEILIDKDEEGNIKPSQVALEFK 394

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +   +L+DE QD++ IQ  ++  ++               +F VGD KQSIY F  A P
Sbjct: 395 DKFEEVLVDEYQDSNTIQETIVGMVSR-------RDVENPNVFMVGDVKQSIYKFRQANP 447

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDST 292
           +  L +    ++           I L  +FRS  +I+  V+ +F    +     L  D  
Sbjct: 448 ELFLEKYINYRE----FEDSNRKIMLYKNFRSREEIINGVNYIFKTLMSNTVGELEYDEK 503

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE------------SWTSYFDSLPQES 340
             +   +S           E +    + +     E            S     +      
Sbjct: 504 EALNLGASYGELNEENVEKEYIDEIENLKVAGDIELNILNKAGNKDYSDDELGEEEEDLD 563

Query: 341 SASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           S  + AR I   I+ ++  +            GK R I+ KDI++L+R  K+        
Sbjct: 564 SIQLEARIIGKKINELMNPEDGSHYMVFDKDLGKYRKIKYKDIVILLRATKNWA---DTF 620

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                 Y I V  +        + I+ ++AL   I +   D+  +  L+SP+F+F+ ++ 
Sbjct: 621 VDELGTYGIPVYADTGTGYFQTIEIRTILALLHIIDNPMQDIYILSSLRSPIFSFTSEEF 680

Query: 454 FKICTQRHETETVYE--------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
             +     +              Y +  +     K ++ + Y+++    A +    +F  
Sbjct: 681 ADLRLLNKDKYFFEIIKEVVDGIYDESISKDLKGKCKYFLDYLNKWREKAAYMPIDEFIW 740

Query: 506 LILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPP 559
            +               G +    L        + E  S+  L   I+ +          
Sbjct: 741 FLYSDTSYYGYVGTMPNGVQRQANLRILFQRAKQYESTSFKGLFNFINFINKLKKSSGDM 800

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              +    N N VRIM++H +KGLE PVV L  TG Q       + + +  +L       
Sbjct: 801 GSAKILGENENVVRIMSIHKSKGLEFPVVILGGTGKQFNKMDLREDILLHETLGIGTNCI 860

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
               + K        + K  +     E  R+LYV  TRA ++LII    +   +   N 
Sbjct: 861 DVKKRIKYDTLQKHAIKKKCELEVLSEEMRILYVAFTRAKEKLIITGAVSDLEKSCENW 919



 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 19/187 (10%)

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
            E    +     +G I H ++Q I                    K    +E   ++    I
Sbjct: 1084 EERQEEFSAAKKGTITHFVMQHIDLDKVTYIDEIREEVLKMVKKELLTEEEGKVVNVFKI 1143

Query: 829  TRLLENPMMTTAMS-----CDSYSEVSVSGKIN------------CPKKDIIISGRIDQI 871
             +  ++ +    +S        Y E+    +I               ++ + + G ID  
Sbjct: 1144 QKFFKSELGQRMLSSYKSGKKVYRELPFITEIPSSIIEKNLDPKIYGEEKVRLQGIIDAF 1203

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
               +    + +YKT +    E E     +  Q+++Y+  L      +     L      K
Sbjct: 1204 FEEEDGYVLLDYKTDYVKEGEEEAFINKYKIQINLYKDTLNKILGEEVKEAYLYSFYLEK 1263

Query: 932  VFIIPQN 938
               I + 
Sbjct: 1264 ELKISKE 1270


>gi|170016834|ref|YP_001727753.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20]
 gi|169803691|gb|ACA82309.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20]
          Length = 749

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/693 (16%), Positives = 206/693 (29%), Gaps = 136/693 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC-IEE 64
           G    ++  L ++    +    V                 + ++   L      +     
Sbjct: 30  GAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREMRERIAALLSEDVARDIWVS 89

Query: 65  RFSLLSSFFLTQKFT---PQKNII---TQEINKKSPDLKEKLKKSQDEFIK--------- 109
            F  L+   L +        KN     T         +   L    +++           
Sbjct: 90  TFHALAVRILRRDGEAIGLAKNFTIIDTSAQRTLMKRVINDLNLDTNQYDPRTILGMISN 149

Query: 110 IRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            ++     + +      A       +   Y+   K++  +DF+DLI+ T DL +    + 
Sbjct: 150 AKNDMLRPRDYAKAADNAFQETVAEVYTAYQAELKRSQSVDFDDLIMLTIDLFQS---AP 206

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +  +  Q+  ++ +DE QDT+  Q+ ++  L +            + L  VGD  QSIY
Sbjct: 207 EVLARYQQQFEYLHVDEYQDTNDAQYTIVNLLAQ----------RSKNLAVVGDADQSIY 256

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA    +L  ++               + L  ++RST +IL   + V +        
Sbjct: 257 GWRGANMNNILNFEKDYPN--------AHTVMLEQNYRSTQNILDAANAVINHNNERVPK 308

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW              Q ++        +       A 
Sbjct: 309 K---------------------LW-------TENGKGDQITYYRAQTEHDE-------AN 333

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I  +  T  +            D  VL R    +  I            +     
Sbjct: 334 FILSNIQQLRETKHMA---------YSDFAVLYRTNAQSRNIEESL----VKANMPYSMV 380

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-------FKICTQR 460
                 +   I D+MA    I + +D+ +F  ++  P        +        ++    
Sbjct: 381 GGHKFYERKEILDIMAYMSLITNPDDNAAFERVVNEPKRGLGATSLTRLRELANRLNVSY 440

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            +     E          SKF    + +H L   ++F +  +   L++     RQ    +
Sbjct: 441 MKAIESIELAPSITTKAASKFLTFAEMMHNLRQQSEFLNVTELTELVMTQSGYRQMLAEK 500

Query: 521 FGNE---VIDVLDEFLNFTLRNEQ----NSYSSLQELISELEQYPPTIKRAH-SANHNEV 572
              +    ++ L+EFL+ T   +         S+  +   L                  V
Sbjct: 501 NDPDSQARLENLEEFLSVTKEFDDKYQPEDPESIDPVTDFLGTTALMSDLDDFEEGDGAV 560

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFL+     +F                                  
Sbjct: 561 TLMTLHAAKGLEFPVVFLIGLEEGIFPLS------------------------------- 589

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                 + +   EE  RL YVG+TRA  +L + 
Sbjct: 590 ---RAMMDEDLLEEERRLAYVGITRAMKKLFLT 619


>gi|300781705|ref|ZP_07091559.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC
           33030]
 gi|300533412|gb|EFK54473.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC
           33030]
          Length = 764

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/627 (15%), Positives = 189/627 (30%), Gaps = 140/627 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y+   ++   +DF+DLI     L K+      +     +   H+L+DE QDT+
Sbjct: 174 VAAVYTQYQRRLREGNAVDFDDLIGEVVGLFKQHP---QVVEYYRRRFRHVLVDEYQDTN 230

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+I +L  +             L  VGD  QSIY+F GA  + +   +R       
Sbjct: 231 HAQYELIHTLVGNG-------PDAPELAVVGDSDQSIYAFRGATIRNIEEFERDYPN--- 280

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 + I L  ++RST +IL   + V +     +                        
Sbjct: 281 -----ATTILLEQNYRSTQNILAAANAVIAQNAGRRPKK--------------------- 314

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       D+    +   + +  +           AR ++  I  +            R
Sbjct: 315 LW------TDTGTGEKIVGYVADNEHDE--------ARFVSTEIDELTD----------R 350

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +Q  DI V+ R    +  +  +         +           +   I+D++A  R + 
Sbjct: 351 GVQYGDIAVMYRTNNSSRALEDIF----IRAGVPYKVVGGTRFYERREIRDIVAYLRILD 406

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY---------IQKFANCGISK 480
           + +D +S   ++  P     +     +          +           I        + 
Sbjct: 407 NPDDSVSMRRIINVPKRAIGDKAQAMVALHADNHGMSFGRALIDGAAGEIPTLGPRAKNA 466

Query: 481 FQHVIKYIHELIHIAQFCS--------PHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
               ++ I  L                     T IL     + +  +    +    +D L
Sbjct: 467 IGGFVEMIQGLRDELPELRNEVTGMPDLGALVTRILDVTGYKAELEASNDPQDGARLDNL 526

Query: 530 DEFLNFTLRNEQN------------------SYSSLQELISELEQYPPTIKRAHSANHNE 571
           +E ++                             SLQ  +  +       +         
Sbjct: 527 NELVSVAREFSSEAANQMAYGEEWDPESGEAQPGSLQAFLERVSLVADADQI-PDEGQGV 585

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+HTAKGLE PVVF+       F H                               
Sbjct: 586 VTLMTLHTAKGLEFPVVFVTGWEDGQFPH------------------------------- 614

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
              +      +   E  RL YVG+TRA ++L + +    S+            + +   +
Sbjct: 615 ---MRAMGDPAELAEERRLAYVGITRARERLYLTRALTRSSWGSPMNNPASRFLAEVPED 671

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHH 718
               ++++   S + + W +   S   
Sbjct: 672 LLDWRRVEPEYSFSNEAWGSPAPSRRA 698


>gi|296169707|ref|ZP_06851325.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895704|gb|EFG75400.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 777

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 114/746 (15%), Positives = 208/746 (27%), Gaps = 138/746 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + +    +     +        +            + L         ++   
Sbjct: 77  AAAEMRERVVR---LVGNRARAMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 133

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L    +   K+ D          +    
Sbjct: 134 LLQMIGRDMGLDI-KRYSPRLLANAISNLKNELIDPAEAVAKLTDD---------SDDLA 183

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 184 RTVASVYGEYQRRLRAANALDFDDLIGETVAVLR---AFPQIAQHYRRRFRHVLVDEYQD 240

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L             P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 241 TNHAQYVLVRELVGHDVTESGDDVPPAELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 298

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I L  ++RST +IL+  + V +     +                      
Sbjct: 299 ------DATTILLEQNYRSTQNILSAANSVIARNSGRREKR------------------- 333

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 334 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALADRGE------ 371

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +     +         I           +   I+D++A  R 
Sbjct: 372 ---ITYNDVAVFYRTNNSSRSFEEVF----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 424

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478
           + +  D +S   +L +P     +     +     +   +  + +   A            
Sbjct: 425 LDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNSRAE 484

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 ++ + EL          D    +L     R++  S    +    +D L+E ++ 
Sbjct: 485 KAIAGFVELLDELRGRLDE-DLGDLVESVLERTGYRRELESSTDPQDLARLDNLNELVSV 543

Query: 536 TLRN-----------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMT 576
                                +         L   LE+           +     V +MT
Sbjct: 544 AHEFSTDRANAAALDESLQAPDDEDVPDTGVLAEFLERVSLVSDSDEIPDDGAGMVTLMT 603

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +HTAKGLE PVVF+      +F H                                    
Sbjct: 604 LHTAKGLEFPVVFVTGWEDGMFPHMRALDDP----------------------------- 634

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                    E  RL YVG+TRA  +L + +    S+  +         + +        +
Sbjct: 635 -----RELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLNPESRFLREIPQELIEWR 689

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENT 722
           +     S +     A  +       T
Sbjct: 690 RTAPAPSFSAPVSGAGRFGAPRAAPT 715


>gi|302023661|ref|ZP_07248872.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68]
 gi|330832685|ref|YP_004401510.1| superfamily I DNA/RNA helicase [Streptococcus suis ST3]
 gi|329306908|gb|AEB81324.1| superfamily I DNA/RNA helicase [Streptococcus suis ST3]
          Length = 759

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/589 (15%), Positives = 183/589 (31%), Gaps = 118/589 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPE---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPES 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST ++L   ++V     N +                      
Sbjct: 273 --------KVVLLEENYRSTKNVLQAANEVIENNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW                ++    D   +       A  +A  I  +           
Sbjct: 306 --LW-------TQNVQGDLITYYRARDENDE-------AIFVAGQIDQLHREGKA----- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 345 -----YKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNI 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + K+       + ++ E  Q               
Sbjct: 396 IANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
             +   ++ L +     +       +L          ++   E     + + EFL+ T  
Sbjct: 456 FDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQEFLSVTKN 515

Query: 539 NE----QNSYSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            +    +   + L +L    L+              +EV +MT+H AKGLE PVVFL+  
Sbjct: 516 FDEKDVEEEETGLDKLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLIGM 575

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF      +                                              YV
Sbjct: 576 EENVFPLSRAAEEEDELEEERRL----------------------------------AYV 601

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           G+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 602 GITRAEQTLYLTNANSRLLFGRTNYNQPSRFIREISSDLLDYQGLARPA 650


>gi|184201466|ref|YP_001855673.1| ATP-dependent DNA helicase PcrA [Kocuria rhizophila DC2201]
 gi|183581696|dbj|BAG30167.1| ATP-dependent DNA helicase UvrD1 [Kocuria rhizophila DC2201]
          Length = 818

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 134/816 (16%), Positives = 246/816 (30%), Gaps = 163/816 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I + +         S  +      +     T+      L          +  
Sbjct: 96  AAAEMRERIAELVGDSARTMWISTFHSLCVRILRREAKTL-----GLNTNFSIYDSADSL 150

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++      +  P K    + I  +   LK +L           D         ST   
Sbjct: 151 RLITQVAKQHELDP-KRFAPKAIQHRISALKNEL----------VDDETCLARASSTDPF 199

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            +    +   Y +  +    +DF+DLI  T  + +       +     +   H+L+DE Q
Sbjct: 200 ESAVAQVYRGYTQRLRAANAMDFDDLIGETVHMFR---AFPQVLEYYRRRFRHVLVDEYQ 256

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS--PRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           DT+  Q+ ++R L      G    S   P  L  VGD  QSIY+F GA+ + +   +R  
Sbjct: 257 DTNHAQYALVRELVGGDSPGHTDESGIPPAELTVVGDSDQSIYAFRGADIRNITDFERDF 316

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST +IL+  + V S   + +                   
Sbjct: 317 PA--------ARTIMLEQNYRSTQNILSAANAVISQNADRRDKK---------------- 352

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW        ++ +       +  +   +       AR IA  I  +        
Sbjct: 353 -----LW-------TAEGDGAPIVGYAAENEHEE-------ARFIAEEIDRLQDE----- 388

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 I+  D+ V  R    +  +  +         +           +   IKD M+ 
Sbjct: 389 ----HGIRPGDVAVFYRTNAQSRSLEEIL----MRVGLPYKVVGGTRFYERKEIKDAMSY 440

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF------ANCG 477
            R I +  DD++   ++  P     +     I      E  +  E + +       A   
Sbjct: 441 LRAIANPADDITVRRIVNEPKRGIGDRAQGSIAALADREGISFSEAMHRLDEAPGLATRS 500

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
            +  +   + + +L  +AQ  S       +L      +   +    +    ++ L E + 
Sbjct: 501 ANAIRTFAQLMDDLGELAQGASVTAVLEAVLEQSGYLEALRTSTDPQDESRVENLAELVA 560

Query: 535 FTLRNEQNSY-SSLQELISELEQYPPTIKR---------------------AHSANHNEV 572
                E++   + L E +  +       +                        + +   V
Sbjct: 561 VVREFEKDRPEAGLGEFLEHVALVADADQIPSRPDTAAEGTASAQQIAQEVEEARDQGVV 620

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+HTAKGLE PVVFL      +F H+                               
Sbjct: 621 TLMTLHTAKGLEFPVVFLTGMEHGIFPHQRSF---------------------------- 652

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                    S+ EE  RL YVG+TRA  +L I +  + S   +S        + +   + 
Sbjct: 653 ------ADPSSMEEERRLAYVGITRARQRLYITRAESRSLWGQSQFNPASPFLDEIPAHL 706

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
              K+     S      +     +      PL                            
Sbjct: 707 IDWKREGAAASGGWGSPVH--AGSGGGTRDPLRGSSWGAGAGSGATF------------- 751

Query: 753 EPYILNPSTIDTKGKTNLESLLS--DNQTFNRGLII 786
               L+PS ++   +    S+    +++ F RG ++
Sbjct: 752 --RRLSPSRVEPNREIPSLSVGDAVEHKAFGRGSVV 785


>gi|293569138|ref|ZP_06680445.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071]
 gi|291588185|gb|EFF20026.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071]
          Length = 744

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 121/760 (15%), Positives = 243/760 (31%), Gaps = 138/760 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 91  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +A    A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    + + +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 382 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  + Q+ +  +    +L      +    +  
Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIQYLTVTELTKEVLDRSGYLEDLKIQNT 501

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++ ++ T            +S   PE   +  +   
Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 687


>gi|268609040|ref|ZP_06142767.1| ATP-dependent DNA helicase PcrA [Ruminococcus flavefaciens FD-1]
          Length = 786

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/752 (14%), Positives = 225/752 (29%), Gaps = 137/752 (18%)

Query: 8   SLNESYELIYKDLWPLPY--FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  E  E +   L          S  +      + +        A            ++ 
Sbjct: 116 AAGELKERLAAMLGEEEAVKINASTFHSACVRILRS-----EITALGYGSDFTIYDSDDS 170

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             ++ S       + ++      + + S    + +   Q      +D             
Sbjct: 171 QRMIKSVMAELDISEKQLAPKAVLGEISRAKDQMITPEQLRADAGQDYRK---------- 220

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   + A Y+E  +    LDF+D++  T +L ++      +  K      +I++DE 
Sbjct: 221 --KMVAKIYARYQEGMRTANALDFDDILTLTVELFEQFPE---VLEKYRTRYKYIMVDEY 275

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q+ ++  L++          S + L  VGD+ QSIY F GA  + +L  +    
Sbjct: 276 QDTNHVQFRLVSLLSD----------SHKNLCVVGDDDQSIYKFRGANIENILGFEDQF- 324

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      +I L  ++RST  IL   + V       +  +                 
Sbjct: 325 -------AGAKVIRLEQNYRSTQTILNAANSVIGNNVGRKAKT----------------- 360

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW        +     +  W    D   +       A  +A TI            
Sbjct: 361 ----LW-------TAGEQGDKVYWYKAVDETDE-------ANFVAETIKKYHKE------ 396

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +  D  VL R    +  I  +         I           D   IKD+ +  
Sbjct: 397 ----TGRYADNAVLYRMNAQSNAIERML----MKCGIPYRVYGGMRFFDRKEIKDVTSYL 448

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGIS 479
            FI +  D L F  ++  P     +  +  I    R    + ++ ++           ++
Sbjct: 449 AFINNHNDMLRFKRIINEPKRGIGDSTLALIEDISRDLKLSPFDVLKTCEEYAPLAKKVT 508

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538
             ++  +   +L   ++     +F   ++          +    +  I+ + E  +  ++
Sbjct: 509 SLRNAYEMFEDLTQKSEELPLDEFLDEVMEKTGYLDYLKTLENADTKIENVQELRSSVVQ 568

Query: 539 N-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              ++   +L   + E+  Y            ++V +MTVH+AKGLE   +F+V     +
Sbjct: 569 YMNESEEPTLGGFLEEVALYTEAD--RDPETDDKVTLMTVHSAKGLEYDNIFVVGLDDGI 626

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          +   EE  RL YV +TR
Sbjct: 627 FPSSRSFDS----------------------------------EDDMEEERRLAYVAITR 652

Query: 658 ASDQLIICKHSNT----SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           A   L +   S        ++    R   ++  +     +    ++   +          
Sbjct: 653 AKKHLYLTNASQRMLFGQTQRNVTSRFMREIGSELIEKHDNAAAMRSKLAEEDKSMTEVH 712

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
            +T   +    + +    +        +++  
Sbjct: 713 SATLQQQLARNKTKPAAPKEAVTYTAGERVAH 744


>gi|262047039|ref|ZP_06019998.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus MV-3A-US]
 gi|293381896|ref|ZP_06627864.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1]
 gi|260572616|gb|EEX29177.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus MV-3A-US]
 gi|290921543|gb|EFD98577.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1]
          Length = 748

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 127/774 (16%), Positives = 243/774 (31%), Gaps = 145/774 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ Q L   +        
Sbjct: 30  GAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMREREQKLLGPAANDIWMST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-------------------KEKLKKSQDE 106
           F  L    L +            I   +  L                   +  L    + 
Sbjct: 90  FHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDLNINPKMYDPRGILAAISNG 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D      M  +      +A  +   Y+   +++ ++DF+DLI+ T  L KK    
Sbjct: 150 KNDLLD--PEAFMQSALSPFEKMAAKVYEEYQRRLRRDQIMDFDDLIMQTLVLFKKD--- 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           + + +    +  ++L+DE QDT+  Q+E+  +L   +          + +  VGD  QSI
Sbjct: 205 SEVLHYYQNKFRYLLVDEYQDTNQAQYELCHALAAQY----------KNICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + ++  ++  +K           ++L  ++RST  IL+  + V    +N + 
Sbjct: 255 YGWRGANMENIMNFEQDYKKY------DVKTVKLEQNYRSTGHILSAANSVIKNNQNRKA 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW         Q + Q+ ++        +       A
Sbjct: 309 KN---------------------LW-------TDQGDGQKVTYYQAQSGDDE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I   I   +         K +    KD  +L R    +  +            I    
Sbjct: 334 HYIISKIQEEV---------KDKKRAYKDFAILYRTNAQSRTVEEAF----VKSNIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  D   IKD+MA  + + +  D +S   ++ +P        + K+ T   E    
Sbjct: 381 VGGHKFYDRKEIKDVMAYLKLVANPADTMSMNRIINTPKRGIGAATVDKLLTFADENHYN 440

Query: 467 ------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                 +            K       + + I  AQ  +       IL          + 
Sbjct: 441 ILDAMGHVAESSINTRAAKKLSDFGTKLRDAIAYAQNGTVTGLTEKILADFDYTDALRAE 500

Query: 521 FGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
              E    ++ LDEFL+ T R       E++  + L + ++E+               N+
Sbjct: 501 NTIESETRLENLDEFLSVTKRFDDHYEPEEDESNPLSDFLAEVSLLSDQDDLDED--DNQ 558

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F  +                              
Sbjct: 559 VALMTLHAAKGLEFPVVFLIGMEDGLFPLQ------------------------------ 588

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC------KHSNTSNEKKSNQRTWYDMV 685
                  +  +  EE  RL YVG+TRA  +L +        +    N   S      D  
Sbjct: 589 ----RAMMDDNELEEERRLAYVGITRAKQELFLTNAYSRMMYGRMQNNPPSRFLDEIDEQ 644

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                 +E+++   + +S  K        +          ++ +     +++  
Sbjct: 645 DLHKEENEKLQSSFIQSSFEKQTAPFARKAERARAEVYTAKKASGAVGAEKKGW 698


>gi|293606186|ref|ZP_06688550.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC
           43553]
 gi|292815446|gb|EFF74563.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC
           43553]
          Length = 764

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/673 (16%), Positives = 214/673 (31%), Gaps = 143/673 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L    +T +    K ++               +  Q      ++
Sbjct: 94  LRAHHRDAGLPQSFQILD---VTDQLAAIKRLMKANGVDDEKYPP---RDVQRFINGAKE 147

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                +  ++  A       +   YE   ++  V+DF +L++   +LL +    A +R  
Sbjct: 148 EGLRPQDVEAYDAHRRRLIEVYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 204

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   HIL+DE QDT+ +Q++ +R L                +FAVGD+ QSIY+F GA
Sbjct: 205 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------GGAAIFAVGDDDQSIYAFRGA 254

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R             ++I L  ++RS   IL   + +        G +    
Sbjct: 255 NVGNMSDFERDYAH--------GTVIRLEQNYRSFGHILDSANALIGHNSGRLGKN---- 302

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW         Q   +          + ++ S  + A+ I   
Sbjct: 303 -----------------LW-------TDQGEGEPV-------RVIEQPSDGMEAQWIVDE 331

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I   ++           ++I VL R    + +I            I          
Sbjct: 332 IRSLIHDGSL----------RREIAVLYRSNAQSRVIEHAI----FSAGIPYKVYGGLRF 377

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   IK  +A  R + +  DD S++ ++  P        + ++    R    ++Y  + 
Sbjct: 378 FERQEIKHALAYLRLMANPHDDTSWMRVVNFPTRGIGARTLEQLADAARAHDTSLYGAVA 437

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530
                G S      + IH LI   +     +    +L        + + R G E ++ L+
Sbjct: 438 LVGGKGGSNLAQFAQLIHRLIEETRDLPLPEMVEHMLETSGLNAHYKAEREGAERLENLN 497

Query: 531 EFLNFTLRNEQNS------------------------------YSSLQELISELEQYPPT 560
           E +                                           L  L + L      
Sbjct: 498 ELITAAAVFASEENYDGMPAGVVPDQATSSTLMPGVVDAPIVASDGLTPLAAFLSHAALE 557

Query: 561 I-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                     + V++MTVH AKGLE   VF+      +F H++                 
Sbjct: 558 AGDNQAQQGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENS---------------- 601

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                              L++S  EE  RL+YV +TRA  +L I    +     ++   
Sbjct: 602 ------------------ILEQSGLEEERRLMYVAITRARQRLYISLAQSRMLHGQTRYA 643

Query: 680 TWYDMVYDSFHND 692
                + +     
Sbjct: 644 MRSRFLDEIPEEH 656


>gi|325684643|gb|EGD26798.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 753

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 122/767 (15%), Positives = 240/767 (31%), Gaps = 137/767 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   +V+  N             + ++   L            
Sbjct: 30  GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89

Query: 66  FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110
           F  L    L +                + Q  ++ + + +   D K+ L +    +    
Sbjct: 90  FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++R  T K ++++       +   +   Y+ + +++ +LDF+DLI+ T  L K    S  
Sbjct: 150 KNRLQTPKQYEASAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 Q+  ++L+DE QDT+  Q+E+ R L + +            +  VGD  QSIY 
Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   +            ++L  ++RST  IL   + V    EN +   
Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         + + ++  +        +        R 
Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +           +  + +D  VL R    +  +            +      
Sbjct: 334 VLAKIKEEVDQ---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   IKD+MA  + + +  D +SF  ++  P     +    K+          +Y
Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTSKLAAFADEMGGGIY 440

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E I+       ++    K       +   I  AQ  +  +    IL      +       
Sbjct: 441 EAIRNVELAPISSSAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDFGYIKALKEEEA 500

Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571
                    ++ L EF   T R +    +        L   L +    + +     + + 
Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F                                 
Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEDNIFPLSR----------------------------- 591

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               IK    +  EE  RL YVG+TRA ++L +               +    +      
Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNSQSRFI--GEIK 646

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
           DE +  +  T   +   ++  +      ++     +        +  
Sbjct: 647 DEDLDIVASTAPKSSTSFLDLDRLPFAEKSQAKAAQPAKIHRASKAA 693


>gi|206900332|ref|YP_002251111.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12]
 gi|206739435|gb|ACI18493.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12]
          Length = 625

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 106/604 (17%), Positives = 226/604 (37%), Gaps = 114/604 (18%)

Query: 87  QEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFK--STLASLTLAKYLNAHYEEAKKK 143
           ++I K     K+   +  +++  +++D+  T + F    + +   +   +   YE+  ++
Sbjct: 122 KDILKDLNRAKDYNARDIKEKISRLKDQLITPQEFSSLISNSFDEIVLEVYKRYEKELRR 181

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF DL++ +  LL+++     I   +  +I ++L+DE QDT+  Q+E+ + +  D 
Sbjct: 182 NNALDFADLLLYSIRLLQEKPA---ICGFLQDKIEYVLVDEYQDTNKAQYELFKIIVLD- 237

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     +    VGD+ QSIYSF GA+ + + R ++  +           +I L  +
Sbjct: 238 ---------KQKFSVVGDDDQSIYSFRGADYQNIFRLEKDFKN--------LRVIFLTKN 280

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL + + + +  +                          +LW           +
Sbjct: 281 YRSTQQILEIANVLIANNDKRYPK---------------------ELW----------SD 309

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            +  ++   F +L +E  A+ +AR+I   ++              +  +  +I VL R  
Sbjct: 310 KKDGTYPVLFRALNEEDEANFVARQIKLEVA--------------KGRRWSEIAVLYRTN 355

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
           + +               I           D   +KD++A    I +  D +S   ++  
Sbjct: 356 RQSRSFEEAL----IRNNIPYKVIGGMSFFDRKEVKDIVAYLNVIYNPNDIVSMKRIINV 411

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
           P     +     I    ++  ++ E +++ +     + +   +    L+ +    +  D 
Sbjct: 412 PRRGIGDATFNMIREYYNKGYSLLEAVKEVS-KIKKEVKSFYELWTYLLVLKDSLTLRDL 470

Query: 504 FTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            + I+       +F ++   E    ++ L E ++F       +  +L E ++ L      
Sbjct: 471 ISTIINKTNYLSEFENQEKKELENRMENLMELMDFADNFSGKAQDTLGEFLTHLSLTNSK 530

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
           ++         V ++T+H+ KGLE  VVFLV     +  H                    
Sbjct: 531 LESTLEEGK--VSLITLHSVKGLEFEVVFLVGMEEGILPH-------------------- 568

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                               K   +E  RL YVG+TRA ++L +   +   +  +   R 
Sbjct: 569 ---------------YNATTKEEIQEERRLCYVGITRAKEKLYLSYAAKRYSRYQEPSRF 613

Query: 681 WYDM 684
             ++
Sbjct: 614 LEEI 617


>gi|322411887|gb|EFY02795.1| DNA helicase II [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 772

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 200/637 (31%), Gaps = 123/637 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  LDF+DLI+ T  L         +     Q   +I +DE QD
Sbjct: 166 QIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDSNPD---VLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 271 ------DAKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +Q  +    D   +       A  +A TISNM          +
Sbjct: 306 --LW-------TQNADGEQLVYYRANDERDE-------AVFVASTISNM---------AQ 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +     KD  VL R    +  I            I               I+DL+A    
Sbjct: 341 ELGKNFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDLIAYLTI 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG-----ISKF 481
           + +  D++SF  ++  P        + K+        +++ E                  
Sbjct: 397 VANPADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKGKAAQSI 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   I +L       S  D    +L           +   E    I+ ++EFL+ T  
Sbjct: 457 MDLANIIGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLESQARIENIEEFLSVTKN 516

Query: 539 NEQN---------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +++             L   +++L     T          EV +MT+H AKGLE PVVF
Sbjct: 517 FDKSSASQEEDETGVDRLGRFLNDLALIADTD--DSQTEAAEVTLMTLHAAKGLEFPVVF 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                              EE  R
Sbjct: 575 LIGMEEGVFPLS----------------------------------RASEDPDELEEERR 600

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA + L +   +  +   KS+       + +        + +      +    
Sbjct: 601 LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYQGLARPAQSSFGVR 660

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
            + +  T   +   L      ++   + +   +    
Sbjct: 661 FSTDKHTQFGQGMSLSEALQARKAQAQVRQSPQPMQA 697


>gi|262282913|ref|ZP_06060680.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA]
 gi|262261165|gb|EEY79864.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA]
          Length = 762

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/591 (16%), Positives = 188/591 (31%), Gaps = 123/591 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N    +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRPPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTMEKIRDFASSQEMSLLDASANILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +  +    +L         +++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMLLDLREHLDDYTVTELVEAVLEKTGYAAALVAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQNSYSS--------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            +++  +S        L   +++L     T      ++   V +MT+H AKGLE PVVFL
Sbjct: 516 FDESPDNSSDESGLDKLSRFLNDLALIADTDDGDQESSE--VTLMTLHAAKGLEFPVVFL 573

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V     VF      +                                             
Sbjct: 574 VGMEENVFPLSRASEDEDELEEERRL---------------------------------- 599

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            YVG+TRA   L +   ++     K+N       + +   +    + +   
Sbjct: 600 AYVGITRAEKILYLTNANSRMLYGKTNYNQPSRFLREISSDLLDYQGLARP 650


>gi|300813139|ref|ZP_07093516.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495893|gb|EFK31038.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 753

 Score =  296 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 123/782 (15%), Positives = 240/782 (30%), Gaps = 135/782 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   +V+  N             + ++   L            
Sbjct: 30  GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89

Query: 66  FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110
           F  L    L +                + Q  ++ + + +   D K+ L +    +    
Sbjct: 90  FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++R  T K ++++       +   +   Y+ + +++ +LDF+DLI+ T  L K    S  
Sbjct: 150 KNRLQTPKQYEASAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 Q+  ++L+DE QDT+  Q+E+ R L + +            +  VGD  QSIY 
Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   +            ++L  ++RST  IL   + V    EN +   
Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         + + ++  +        +        R 
Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +           +  + +D  VL R    +  +            +      
Sbjct: 334 VLAKIKEEVDQ---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   IKD+MA  + + +  D +SF  ++  P     +    K+          +Y
Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTSKLAAFADEMGGGIY 440

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E I+       ++    K       +   I  AQ  +  +    IL      +       
Sbjct: 441 EAIRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDFGYIKALKEEEA 500

Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571
                    ++ L EF   T R +    +        L   L +    + +     + + 
Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F                                 
Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEDNIFPLSR----------------------------- 591

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               IK    +  EE  RL YVG+TRA ++L +               +    + +    
Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNSQSRFIGEIKDE 648

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
           D  +       S      +         +    +  +  +       +  +       D 
Sbjct: 649 DLDIVASTAPKSSTSFLDLDRLPFAKKSQAKAAQPAKIHRASKAAGAVGAEKKGWHPGDQ 708

Query: 752 NE 753
            E
Sbjct: 709 VE 710


>gi|293560000|ref|ZP_06676508.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162]
 gi|291606088|gb|EFF35514.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162]
          Length = 744

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 120/760 (15%), Positives = 243/760 (31%), Gaps = 138/760 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 91  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +A    A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    +++ +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 382 GHKFYDRKEIKDILAYLNVLVNPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  +  + +  +    +L      +    +  
Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++ ++ T            +S   PE   +  +   
Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 687


>gi|154249214|ref|YP_001410039.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
 gi|154153150|gb|ABS60382.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
          Length = 1130

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 151/935 (16%), Positives = 313/935 (33%), Gaps = 126/935 (13%)

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            + D           L  ++L       YE     N   DF+ ++  T ++L   +    +
Sbjct: 226  LLDVMKKAGNSFRVLRLISLIAS--ELYEAETIDNFEYDFKGVLEKTIEVLNNNEE---V 280

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
            R    +   +I++DE QDT+ +Q  +   +          H+    +F VGD KQSIY F
Sbjct: 281  RKYYQERFKYIIVDEFQDTNELQRMIFDFI----------HTDKNYIFYVGDRKQSIYRF 330

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV------------ 277
             GA+    ++     +KRA  +  K+ I+ L  ++RS   ++   +KV            
Sbjct: 331  RGADVSVFVKTMDEFEKRAKISPDKYRILSLQTNYRSHEFLVDYFNKVSRDSIFRNEIYD 390

Query: 278  -------FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQVVSQHDSQCNPQQESW 329
                   F+  +    +S+D      H + R+        LW       ++     +   
Sbjct: 391  MLSNLNGFNSNKPISEISDDEAKLYLHEAFRLRYRDLYDKLWFLDEDISNAHIKKLESEV 450

Query: 330  TSYFDSLPQESSA---------------SILARRIAYTISNMIGTDTIFSNGKK-----R 369
                D L +  S                   A  +A  I N++G +    + +K     R
Sbjct: 451  IPQIDFLNESISRVSYLSIVSLDEKVSPEDEANLVAMAIKNLVGKEITIFDKEKNDYVTR 510

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             ++ KDI +L  K      I  + R     + I +             I+ +++    I 
Sbjct: 511  KVEYKDIAILSYK---LAGIESIYRETFGKFNIPLYVVKGRGFYKRPEIRAVISALSVIQ 567

Query: 430  SQEDDLSFVCMLKSPL------------FNFSEDDIFKICTQRHETE--TVYEYIQKFAN 475
            +  +D +FV    +P             F      +      R   E  + ++  +K   
Sbjct: 568  NPNNDYNFVEFFLTPFVESTDFSPSFDKFKILHKIVLNARKLRENGERISFFQSAKKLGK 627

Query: 476  CGISKF-QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFL 533
              +  +   +I+ + +   +  F  P +     +       +        + +  + + L
Sbjct: 628  EDLPDYVSEMIELVQKYDELKYFLRPAEVLKGFINESYYLAKLSKFPNSVQRLKNVKKLL 687

Query: 534  NFTLRN--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            +       + +++S L  L+S++E+   T     S   N V++MTVH +KGLE  +VFLV
Sbjct: 688  DQATEFNQQASTFSELIRLLSKVEELQETEASEVSEEDNVVKMMTVHASKGLEYNIVFLV 747

Query: 592  DTG-------SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            +            F        +I      +     +         +  +L +      +
Sbjct: 748  NNNFNEMESDEVFFPSDDNGGRYIHIKRFIENYKDKFNINKDEYKKLKGEL-EAELIYDE 806

Query: 645  EEYNRLLYVGMTRASDQLIICKHSN--TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             E  R +YV +TRA + L +  ++   +  ++      +           ++ +  ++  
Sbjct: 807  TEILRKIYVAITRAKEMLFVVTYNTNSSRGKRGKTAGQYLAHNEFKTITIDKKQIDEMVK 866

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
            S++  E+   E      E    ++ E    +  ++ I   L   I ++ ++  ++N   +
Sbjct: 867  SLSISEFSGEENKKLLDEEKIRKQIEDFSNIGYKRYISPTLLYNITDEKSDKELVNELEV 926

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQV-------------------IFTLPEHKRKN 803
            D +    L                 K+ +                    + T  E     
Sbjct: 927  DFEENMPLFEGQEKQDIL-------KIFEKNQEKQKRSKSEVSLLLSSLLETSREVIEGK 979

Query: 804  FITSYC---TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCP 858
             I        +   L    E   L   I   L+  ++      S    SE  ++  +   
Sbjct: 980  NIHRRLMSVQRYPDLLNLVERGELPEKI---LKADVIKYLFENSDKVISEWRIAKSVVID 1036

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             K   + G  D++      I++ ++K+ +      E     +  QL  Y  +LKD    +
Sbjct: 1037 GKKYTLFGVPDRVFFKDGKIYVVDFKSSYLKDGSEE--VEKYKFQLQFYMYMLKDF--GE 1092

Query: 919  SLVCLLIYVSEPKVFII--PQNKLNKAFAEISTKI 951
                 L+      V  +  P +   +  A++   +
Sbjct: 1093 IAGGYLVGARSGFVIRVERPGDDFIELLAKLIRNL 1127


>gi|257878463|ref|ZP_05658116.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933]
 gi|257882882|ref|ZP_05662535.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502]
 gi|257889340|ref|ZP_05668993.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410]
 gi|257894352|ref|ZP_05674005.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408]
 gi|260560050|ref|ZP_05832228.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68]
 gi|314937828|ref|ZP_07845145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04]
 gi|314941626|ref|ZP_07848506.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C]
 gi|314948873|ref|ZP_07852242.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082]
 gi|314951009|ref|ZP_07854076.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A]
 gi|314993010|ref|ZP_07858406.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B]
 gi|314996457|ref|ZP_07861500.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01]
 gi|257812691|gb|EEV41449.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933]
 gi|257818540|gb|EEV45868.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502]
 gi|257825700|gb|EEV52326.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410]
 gi|257830731|gb|EEV57338.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408]
 gi|260073885|gb|EEW62209.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68]
 gi|313589439|gb|EFR68284.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01]
 gi|313592533|gb|EFR71378.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B]
 gi|313596864|gb|EFR75709.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A]
 gi|313599517|gb|EFR78360.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C]
 gi|313642859|gb|EFS07439.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04]
 gi|313644663|gb|EFS09243.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082]
          Length = 747

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 120/760 (15%), Positives = 243/760 (31%), Gaps = 138/760 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 34  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 93

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 94  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 153

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +A    A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 154 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 211

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 212 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 260

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 261 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 312

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 313 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 337

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 338 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 384

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    +++ +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 385 GHKFYDRKEIKDILAYLNVLVNPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 444

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  +  + +  +    +L      +    +  
Sbjct: 445 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 504

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 505 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 564

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 565 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 610

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 611 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 650

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++ ++ T            +S   PE   +  +   
Sbjct: 651 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 690


>gi|77919306|ref|YP_357121.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Pelobacter
            carbinolicus DSM 2380]
 gi|77545389|gb|ABA88951.1| ATP-dependent exoDNase (exonuclease V) beta subunit [Pelobacter
            carbinolicus DSM 2380]
          Length = 1118

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 144/909 (15%), Positives = 298/909 (32%), Gaps = 114/909 (12%)

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNI------------ITQEINKKSPDLKEKLK--- 101
            + +      +  L+   LT+  T +K +                + K+   L E L    
Sbjct: 276  AASADALPIWRGLAELVLTRSGTVRKRLDKNCGFPPGKQEPAASMKKEMARLLETLAADE 335

Query: 102  ---KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
               +   E   +         ++   A  TL     A      K+    DF ++ +    
Sbjct: 336  GVLELFAEVRSLPPVVYEPDQWQVLEALTTLLPRAVAELWLVFKEQGQCDFVEVALAAGR 395

Query: 159  LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
             L + D    +   +D  I HIL+DE QDTS  Q+ +++ LT  +  G       R+LF 
Sbjct: 396  ALGEVDAPTDLLLHLDSRIRHILVDEFQDTSWGQFLLLKKLTAGWQQGDG-----RSLFL 450

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            VGD  QSIY F  AE    L+ +            +   + L  +FRS A ++  V++VF
Sbjct: 451  VGDPMQSIYRFREAEVGLYLQARHH-----GIHQLRLEALYLSTNFRSQAGVVDWVNRVF 505

Query: 279  -SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
              +    +  +  S T     ++R    G                        +      
Sbjct: 506  PELFPPREDEALGSVTYAASVAARDVLDGP-----------------------AVTCHPM 542

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                    A ++   +              +R      + VLVR R     I    R   
Sbjct: 543  AGRDDRAEALQVVDLVRQ-----------ARRADPEGTVAVLVRARTHLSQILTAFRE-- 589

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                +     +   L D    +DL+AL R +L   D ++++ +L++P    S  D+  +C
Sbjct: 590  --AGLPFRAQEIDALADRSVAQDLLALTRALLHPGDRVAWLAVLRAPWCGLSLADLHALC 647

Query: 458  -----TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                     E     + + + +  G  + +  +  +++ +      S          A  
Sbjct: 648  GETPDATLPELLRQPQRLMRMSADGRMRVERCLGVLNQSLSQRGRVSLRMLVEGAWLALG 707

Query: 513  GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
            G        G    + L   L+       +    +  +    ++          A  + +
Sbjct: 708  GPGCL-DDAGLVDAEALFGLLDQL-----DYGGDMLPMEGLADKLSKLFAAPDPAADDTL 761

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            ++MT+H AKGLE   V L   G +  +        +          P+     +SR+ I 
Sbjct: 762  QVMTIHKAKGLEFDTVILPGLGRRPRTEDAPLMRWLELPETGLLLAPLAPLDGQSRDPIY 821

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
              + +  K+    E  R+LYV  TRA  +L +  ++  S + +        +        
Sbjct: 822  DAIGRVEKQKCDLEIARVLYVAATRAKKRLHLLGYARPSRDGEFRPSGGSFLEKLWPAVG 881

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +R   +                  +       +  +T++Q+            P  +  +
Sbjct: 882  DRFDGL------------------NPELTDSSDAPKTVRQMRLLGSDWVLPALPSTSAQS 923

Query: 753  EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR--------KNF 804
               +L+PS+     +       ++    + G ++H  L+ I                +  
Sbjct: 924  SMEVLSPSSTAHHSQGTTLMPETE-DGRHIGTLVHACLERIANEGLEHWSIGRVEKERPT 982

Query: 805  ITSYCTKNAKLWPA--KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
            +     +         +    ++ +++  L +      +     S  +    ++      
Sbjct: 983  LCHRLGRMGVAVDRCMQAADRIVEAVSNTLNSDRGRWILGKHEKS--ACELSLSGVLDGR 1040

Query: 863  IISGRIDQISISQQNI-FIFEYKTH--HHVPQEI--EHIPYTHIAQLSIYEKILKDSYPN 917
            II   ID+  + ++ + ++ +YKT     +  ++  E   + +  QL +Y ++ +   P 
Sbjct: 1041 IIHAEIDRTFVDKEGVRWVVDYKTGDSKGMADDVFFEQQAHIYKGQLELYARLFQALEPG 1100

Query: 918  KSLVCLLIY 926
              +   L +
Sbjct: 1101 CHVRTALYF 1109


>gi|225181788|ref|ZP_03735226.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
 gi|225167562|gb|EEG76375.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1]
          Length = 694

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 118/682 (17%), Positives = 218/682 (31%), Gaps = 126/682 (18%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKK-AQTLQQASQTQCIEERFSLLSSFF-LTQKFTP 80
                   I + V  +      T     A+ L++ +        F +  S   LT     
Sbjct: 42  AAEELRGRIEELVGTAPGIWASTFHAASARILREHADRLGYTSSFVIYDSADQLTVIKNV 101

Query: 81  QKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            KN+ +  +   K   +   + ++++E + +         F S          +   Y+E
Sbjct: 102 MKNLNLDDDTRFKPRGVLSAISRAKNEMMDVDTYDEAADNFYS-----RTVAKVFRSYQE 156

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             + N  LDF+D+++    LL++      +     ++  +IL+DE QDT+ +Q+E++R L
Sbjct: 157 RLRLNNALDFDDMLLLVVKLLREHPE---VLKAYQEKFRYILVDEYQDTNRVQYEIVRLL 213

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                         R L  VGD+ QSIY F GA+ + +L  +R   +          +++
Sbjct: 214 ----------GGVHRNLCVVGDDDQSIYQFRGADIRNILDFERDWPE--------AEVVK 255

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS+ +IL     V       +                        LW        
Sbjct: 256 LEENYRSSGNILEAAWHVVKHNAGRKDKK---------------------LW-------T 287

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
           SQ         +  D           AR IA  I  +                     VL
Sbjct: 288 SQEAGDPIQVYTAQD-------EQQEARYIAGEIRKL-------------SATYDQFAVL 327

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  I            IS          +   +KD++A  R + +  D +S + 
Sbjct: 328 YRTNAQSRAIEDAL----IRENISYQMVGGVRFWERKEVKDILAYLRVLDNPADGISLLR 383

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC------GISKFQHVIKYIHELIH 493
           ++  P        + K+     E    +    + A+        + K +     +  L  
Sbjct: 384 VINVPRRGIGATSVEKLNNMASERGITFYEALRLADEAGLGSAPLKKVKSFAALLENLQQ 443

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQE 549
           + ++ S  +    ++       +  +   ++     + L EFL       +++   SL  
Sbjct: 444 MREYLSVDELTEQVMIKSGYLDELRAEGTDQAQSREENLLEFLTVAQDFVKESEDKSLTA 503

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +++L                 V +MT+H AKGLE PVVF+      +F H         
Sbjct: 504 FLTQLSLVSDLDTLEDDGGP-RVVLMTMHAAKGLEFPVVFVAGMEEGIFPHMRSFDT--- 559

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                              EE  RL YVG+TRA  +L +    N
Sbjct: 560 -------------------------------ADGIEEERRLCYVGITRAEKRLYLTSAMN 588

Query: 670 TSNEKKSNQRTWYDMVYDSFHN 691
            +   +         + +    
Sbjct: 589 RNLFGRRMHNMPSRFLRELPDA 610


>gi|255009480|ref|ZP_05281606.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
 gi|313147251|ref|ZP_07809444.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
 gi|313136018|gb|EFR53378.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
          Length = 786

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 103/689 (14%), Positives = 218/689 (31%), Gaps = 129/689 (18%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             A +   + + + Y E  ++   +DF+DL++ T  L +       +  +  ++  ++L+
Sbjct: 168 AAAKMPAIRDIYSRYRERCRQAGAMDFDDLLVYTYVLFRDFPE---VLARYREQFRYVLV 224

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +
Sbjct: 225 DEYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTK 274

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           I             + +L  ++RST  I+   + +    E        S           
Sbjct: 275 IYP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNERQIPKEVFS----------- 315

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                           + +       + +Y D    +         +   I+ +      
Sbjct: 316 ----------------EKERGEAIGVFQAYSDVEEGDI--------VTNKIAQLRRE--- 348

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                       D  +L R    + +     R       +               IKD++
Sbjct: 349 ------HDYGYSDFAILYRTNAQSRVFEEALR----KRSMPYKIYGGLSFYQRKEIKDII 398

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474
           A  R +++  D+ +F  ++  P     +  + KI         +++  + +         
Sbjct: 399 AYFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIIKAATDNNVSLWTVLCEPITYGLTIN 458

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
               +K Q   + I + +      + ++  T I+               E     + ++E
Sbjct: 459 KNTHTKLQGFRELIEQFMTEVAEKNAYEIGTAIIRQSGIINDVCQDNLPENLSRKENIEE 518

Query: 532 FLN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            +N         + E N+  SL + +SE+             +  +V +MTVH+AKGLE 
Sbjct: 519 LVNGMNDFCAMRQEEGNTNVSLIDFLSEVSLLTDQD-SDKEGDGEKVTLMTVHSAKGLEF 577

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+V     +F                                              E
Sbjct: 578 RNVFVVGLEENLFPSGMAGDSP----------------------------------RAME 603

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YV +TRA +   +          K    +    + D      ++ +        
Sbjct: 604 EERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLRDIDTRFLQLPQEAALGRSV 663

Query: 706 KDEWIAYEWS-----THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY--ILN 758
            +    +        +  P         +  +   E+   + +   +  ++       ++
Sbjct: 664 DEGAGRFRREMEEGYSRRPSAERFSARPSADRPQRERPKEQIIAPTVPRNLKRVSGTTVS 723

Query: 759 PSTIDTKGKTNLESLLS-DNQTFNRGLII 786
           PS     G T ++   + +++ F  G +I
Sbjct: 724 PSAAPGAGITGVQPGQTIEHERFGIGQVI 752


>gi|301165556|emb|CBW25127.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ]
          Length = 752

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 104/633 (16%), Positives = 210/633 (33%), Gaps = 121/633 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               YE    K   +DF  LI     L +K      +  +  +   ++L+DE QDT+  Q
Sbjct: 175 FYQEYEAELHKANAVDFGSLITGVIQLFEKFPD---VLKRYQERFKYLLVDEYQDTNRAQ 231

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+++ L+E            R +  VGDE QSIYS+ GA+ + +L  + +         
Sbjct: 232 FELVKMLSEQ----------NRNVCVVGDEDQSIYSWRGADIRNILDFEEVF-------- 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               I++L  ++RS+ +I+     V +     +G                          
Sbjct: 274 SDAKILKLEQNYRSSKNIIEAATHVIARNSQRKGKDMW---------------------- 311

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  +  + +       F+   +          +A  I  +                
Sbjct: 312 ------TNNPHGEDIDIVECFNDKTEG-------EFVAQKIRELSKEGHP---------- 348

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K++ V  R    + LI    R       I           +   IKDL+A  R +++++
Sbjct: 349 FKEMAVFYRTNTQSRLIEDNLR----KNNIPYRVVGGVKFYERKEIKDLIAYMRIVVNEK 404

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------------IQKFANCGIS 479
           D L+   ++  P        + K+         +++E               + +    S
Sbjct: 405 DSLALSRIINVPARGIGATTLRKLENEAVTNNCSLWEMLDTVVANPENYKHIRLSAKVKS 464

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
              H++  I+E+       +P   +  +L          S    E    ++ L+E  N  
Sbjct: 465 ALSHLVTLINEVRVSVDNVAPSSLYEKLLHESGYWDFLKSSKDYESQARMENLEELQNAI 524

Query: 537 LRNEQNS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           ++ E+++   SL   +  +     + +  +  N  EV +MT+H AKGLE   VF+     
Sbjct: 525 VQYEESNKSPSLLNFLETITL-DTSGEGDNPENTGEVSLMTIHGAKGLEFLHVFVTGAEE 583

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                          ++  EE  RL YV M
Sbjct: 584 NIFPSYKSL---------------------------------ENGETAIEEERRLFYVAM 610

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L I          +         +++  +   + +K   +   + + W + +  
Sbjct: 611 TRAMEKLYITFAQGRMLFGQLRFNGPSRFLHEIPNKYYQWRKPNGSTMSSGNSWDSEDDF 670

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
             + ++   +  E + Q+   ++      +   
Sbjct: 671 DDYNQDQSYDEGEAVYQVASFKEEKSAPKAKFP 703


>gi|160879499|ref|YP_001558467.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
 gi|160428165|gb|ABX41728.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
          Length = 807

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 93/530 (17%), Positives = 180/530 (33%), Gaps = 77/530 (14%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+   K N  LDF+DLI+ T +L +    +            +I++DE QDT+ IQ
Sbjct: 172 VYKEYQRRLKTNNALDFDDLIMKTVELFQSNTEA---LNYYRNRFRYIMVDEYQDTNTIQ 228

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++IR L          +     L  VGD+ QSIY F GA  + +L  ++          
Sbjct: 229 FKLIRLLAH---SLNEYNEVEHNLCVVGDDDQSIYKFRGANIRNILDFEKEFP------- 278

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +I+L  ++RST +IL   ++V       +  S                     LW 
Sbjct: 279 -DAVVIKLEQNYRSTKNILNAANEVIHNNLGRKDKS---------------------LW- 315

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +Q S+  Y     +       A ++  +I  +   D          I 
Sbjct: 316 ------TDNEDGEQVSFCQYDTDFAE-------ATQVVDSIKTLNDQD---------GIS 353

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +  +L R    + +             +               IKDL+A  + I +  
Sbjct: 354 FNNFAILYRTNAQSRVFEEKM----IQRSVPYKIIGSINFYQRKEIKDLLAYLKTIDNGL 409

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN-----CGISKFQHVIK 486
           D ++   ++  P        + ++         + Y+ ++   N        SK    + 
Sbjct: 410 DGIAVKRIINVPKRGIGLTTLDRVEEFSVKNNMSFYDALRHAENIPGLGRSTSKITSFVS 469

Query: 487 YIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRN-- 539
           +I  +     +   +  D    IL      ++          D    ++E +N  +    
Sbjct: 470 FIETIKSKLSSDTFTLKDLMEEILEGTGYLKELEEADDESAEDRIGNINELINKIVTYEV 529

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E     +L   + E+         +   + N V +MT+H+AKGLE P V+L      +F 
Sbjct: 530 EATEPPTLSGFLEEVALVADID--SLEEDSNHVVLMTLHSAKGLEFPYVYLCGMEDGIFP 587

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                         ++     ++  +++   I     +      + ++NR
Sbjct: 588 SYMSINAENPELEIEEERRLCYVGITRAMKQIHLSAARQRMMRGETQFNR 637


>gi|322417761|ref|YP_004196984.1| UvrD/REP helicase [Geobacter sp. M18]
 gi|320124148|gb|ADW11708.1| UvrD/REP helicase [Geobacter sp. M18]
          Length = 730

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/602 (15%), Positives = 184/602 (30%), Gaps = 116/602 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y+E  K+    DF DL++ T  L ++      +  K  Q    I++DE QDT+
Sbjct: 165 LARVYRCYQERLKRCNAADFGDLLLLTVQLFEEHPE---VLDKYLQRYRWIMVDEYQDTN 221

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+ +++ L            S + L  VGD+ QSIY + GA+ + +L  ++       
Sbjct: 222 PVQYRLVQLLAG----------SRKNLCVVGDDDQSIYGWRGADIRNILEFEKDFP---- 267

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +++L  ++RST  IL     V    +  +                        
Sbjct: 268 ----GVKVVKLEQNYRSTKTILDGAWHVVQKNKGRKPKK--------------------- 302

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW             ++  + +  +   +       A+ +   I   +      +     
Sbjct: 303 LW-------TDNPEGERIVYRTLPNEWEE-------AKLVCREIERFLLEGGDLAQ---- 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 + V  R    + +I            +             L +KD++A  + + 
Sbjct: 345 ------VAVFYRTNAQSRVIEDAMVA----ASVPYHMVGGVRFYARLEVKDILAYLKVLD 394

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQ 482
           +  DD+S   ++ +P        + KI      +    Y+ + + A           K  
Sbjct: 395 NPSDDVSLKRIINTPPRGIGNTTVQKISDFAAGKGIPFYDAMLEGAYGPLLPAAAKGKVA 454

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRN 539
                +     + +     +    I+       +          E I+ L E +      
Sbjct: 455 AFANELDGYKTLTEKLPLSELTAAIINDSGYYARLKQLGSDEAQERIENLQELVTAMQVY 514

Query: 540 EQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E       L + + ++      ++       +   +MT+H+AKGLE P+VF++    ++F
Sbjct: 515 ETGPGEKGLADFLEQVALVS-DLEHEGEGKKSSATLMTLHSAKGLEFPLVFMIGMEERLF 573

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                            EE  RL YVGMTRA
Sbjct: 574 PH----------------------------------ARALENPEQMEEERRLCYVGMTRA 599

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             +L +          +         + D          +      ++D       S   
Sbjct: 600 KKRLFLLNVRRRHIFGQEQMNPPARFIADIPRELLDSGDLWQRPEPSRDSSSHNLASLFE 659

Query: 719 PE 720
            E
Sbjct: 660 DE 661


>gi|260220997|emb|CBA29121.1| hypothetical protein Csp_A10560 [Curvibacter putative symbiont of
            Hydra magnipapillata]
          Length = 1131

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 159/944 (16%), Positives = 329/944 (34%), Gaps = 108/944 (11%)

Query: 25   YFQVSDINKYVSLSM-ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKN 83
               V  +    + ++  +   T  +    L++A   +     F  L     T K TP+K 
Sbjct: 262  SDVVQQLLWASAKALGASSLKTCTEAGSELEKALTARDATAIFKAL----FTDKGTPRK- 316

Query: 84   IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
                    +     E ++++Q    + +   + ++ +        L++ L   Y   K++
Sbjct: 317  ------LSEKVVGIETVREAQALLAETKAAIDQHQAWLHQQRMARLSRGLLQDYAALKRE 370

Query: 144  NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
               +D  DL      LL   ++S W++ ++D  + H+LIDE QDT+ +QW+ +      +
Sbjct: 371  RGWIDMGDLEQAALRLLSDEEISGWLQERLDARVKHLLIDEFQDTNPLQWQAL----STW 426

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
              G +   +   +F VGD KQSIY F  AEP+          K     G +  ++    +
Sbjct: 427  LQGYSGAGNRPGVFIVGDPKQSIYRFRRAEPQVFRAA-----KAFVVEGLQGDVLSCDHT 481

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
             R+   I+ +V+      ++A    +    T           G+V    ++      + +
Sbjct: 482  RRNAQAIIGLVNTAMLGAQDAGEFEDYRPHTSE-----SVDAGSVWKLPRIERTAKPEED 536

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
              ++       + P+  S   L        +  +        G+   ++ +DI+VL RKR
Sbjct: 537  GSEDLVWRDSLTTPRHESEDTLKTLECRQAARWLAGQLSGRGGQ---LRPQDIMVLARKR 593

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            +   L+      L+    I     ++  L +   ++DL+AL   ++S   DLS    LKS
Sbjct: 594  ERLTLMQQELAALR----IPAQQPEKNELGEMPEVQDLVALLDVLVSPAHDLSLARALKS 649

Query: 444  PLFNFSEDDIFKI-----CTQRHETETVYEYIQKFANCGISKFQH--------------- 483
            PLF  S++D+  +       +R       + +       + +F                 
Sbjct: 650  PLFGASDEDLVDLSLLHQTARRQARAADPDALVPGWMAVLCEFAAADPDVEGGLPLSQRM 709

Query: 484  --VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTL 537
                + +       Q    HD  + I        +F +         V+  +   LN  L
Sbjct: 710  LSAARSLTRWQGWVQSLPVHDALSAIYDDGDVLARFAAASPAVLRESVLANVRALLNAAL 769

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            + +   YS+   L+  L      I     A+   VR++T+H AKGLE+P+V L+DT ++ 
Sbjct: 770  QVDGGRYSTAYTLVRALRAGG--IPAPVRADAGAVRLLTIHGAKGLEAPLVILLDTDAEG 827

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
               + +  +   P     P   +++         V D +   + +   E    LYV +TR
Sbjct: 828  TRPESMGVLVDWPGEAAYPRKFVFLASESRPPACVVDTLALEQTARAREELNALYVALTR 887

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                L++   +      +  + +W+  + +   +      ++  +S    E         
Sbjct: 888  TQSTLVLSSTAPH----REREGSWWKRLQELAADVAPSTALEGVDSAESTE--------- 934

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                      +T +     +   + L   +     E     P  I      +LES     
Sbjct: 935  ---------SDTAEPFALWELPTEGLKRKVPLAPMEYARAAPELIAVTEPESLES----- 980

Query: 778  QTFNRGLIIHKLLQVIF----TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
                 G  +H+LL+ +      +P+                     + +        +L 
Sbjct: 981  ---RIGQAMHRLLEWLPLREGQVPDADAWTPEQCAQAARTFSLTEAQMQQAQRMAQGILG 1037

Query: 834  NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN--IFIFEYKTHHHVPQ 891
                  A    + +  +    +    + + +    D++   +     ++ ++K+      
Sbjct: 1038 GE-GAWAWRRSALAWHANEVALTHGGRTLRL----DRLVQRRDTAAWWVLDFKSSASPQD 1092

Query: 892  EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            + E        QL  Y   L   YP + +    +   + ++  I
Sbjct: 1093 QPELCA-----QLREYRAALTQIYPGEGVHTAFL-TPQGRLIEI 1130


>gi|119025711|ref|YP_909556.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765295|dbj|BAF39474.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC
           15703]
          Length = 879

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 119/726 (16%), Positives = 218/726 (30%), Gaps = 123/726 (16%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P   +  +S  +      +      I      L+         +  
Sbjct: 70  AAAEMRERLVTLVGPEAEHMWISTFHSACVRILRRDGKEI-----GLKSGFSIYDTADS- 123

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA- 125
             L            K    + +  K  D K  L   +D+  K    +   +      A 
Sbjct: 124 ERLVKLIAADLNIDTKRYTPRMLLGKISDCKNALVSWKDQLKKANCDYTPGQRGYQVSAG 183

Query: 126 -SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
               L   + A Y+        +DF+DLI+ T +LL+       +         +I +DE
Sbjct: 184 DVDELVAVVYAEYQHRLALANAVDFDDLIMRTVELLQT---CPQVSEYYRHRFRYIFVDE 240

Query: 185 VQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            QDT+  Q+ ++R L+        D          P  +  VGD  QSIY+F GA+ + +
Sbjct: 241 YQDTNHAQYVLVRELSGIDSDEQPDPQARGAGRVGPSWITVVGDSDQSIYAFRGADIRNI 300

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              ++               I L  ++RST  IL   + V +  EN +            
Sbjct: 301 QDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIAKNENRKPKK--------- 343

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                       LW  +                          +A   A  IA  I+ + 
Sbjct: 344 ------------LWTALGQGDKIVGYAA--------------DNAQQEAGWIANEIARIH 377

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
             +          +  +DI ++ R    +  +         +  +           +   
Sbjct: 378 TEE---------DVAYRDIAIMYRANAQSRSLEEAM----INANLPYQLVGGTKFYERRE 424

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKFAN- 475
           +KD +A  + I++  D+++   +L  P                     T +E I+     
Sbjct: 425 VKDAIAYLQAIVNPADNVNVRRILNVPKRGLGARAEGLVAGYADAHGLTFFESIEHMDQI 484

Query: 476 -----CGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
                            +HEL   A      P +    +L      ++       +    
Sbjct: 485 EGMTGRTTKPLGAFRDLMHELADFAKEHDSKPSEVVAEVLDKSGLLEELQRSEDPQDASR 544

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583
           +D L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKGL
Sbjct: 545 VDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGEGEDSGKVTMMTLHTAKGL 604

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P VFL       F H+                                        S 
Sbjct: 605 EYPYVFLTGMEQGTFPHQ----------------------------------RAMEDTSE 630

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             E  RL YVG+TRA  +L + + +  +   ++N       + +        K+ +    
Sbjct: 631 LSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANDMMPSQFLDEIPDELIDWKRREAGVE 690

Query: 704 INKDEW 709
             +  W
Sbjct: 691 RMRASW 696


>gi|269120962|ref|YP_003309139.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
 gi|268614840|gb|ACZ09208.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
          Length = 724

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 115/691 (16%), Positives = 235/691 (34%), Gaps = 134/691 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  + Y+    +    VS +N             + ++A+ L            
Sbjct: 27  GAGSGKTRTVTYRIAHMVREKGVSPLNILALTFTNKAAKEMKERAEALVGNDIHNLQIST 86

Query: 66  FSLLSSFFLTQKFTP--------------QKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
           F   S   L                    QK++I++ + + +        K  +   K++
Sbjct: 87  FHSFSVRLLRIYGEKLGYGKNFNIYDTDDQKSLISKIMKELNVQDDSTPGKIANRISKLK 146

Query: 112 DRFNTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++    K  +  +        +   +   Y++  + +  +DF DLI+N N LL   +   
Sbjct: 147 EKGIDIKTIEREVDLRVPSNRVFFDIYDKYDKTLRSSNAMDFSDLILNANKLLDNSE--- 203

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +  ++ +   +I++DE QDT+ +Q+E+I  +   +            +  VGDE QSIY
Sbjct: 204 -VLERVQERYRYIIVDEYQDTNDLQYEIINKIASKY----------NNICVVGDEDQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA    +L  +R  +           +I+L  ++RST  IL   +++    ++++G 
Sbjct: 253 AFRGANINNILNFERDYKNAL--------VIKLEKNYRSTERILNAANELIRNNKSSRGK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW             ++    +  ++  +       A 
Sbjct: 305 K---------------------LW-------TDAGKGEKIQVFNAANTFDE-------AN 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            IA  I              +  +  KD+ VL R    + ++            I     
Sbjct: 330 FIAEEIVR----------KNREGVPFKDMAVLYRTNAQSRVLEEKM----LLNNIKYRVY 375

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                     +KDL+A    I + +D+L+FV ++  P  +  +  + K       +  ++
Sbjct: 376 GGMQFFQRREVKDLLAYLSVINNIQDNLNFVRIINVPKRSIGDKSVAKFAEIAAQKGISL 435

Query: 467 YEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E ++              K +   + + +++   +  +  + F  IL   K        
Sbjct: 436 FESLKYIDEVSGLRAAAKEKLKDFYRLLTDVLENLEHMTVSEIFQEILNRTKYIDSI-ED 494

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
              + +  ++E +N     E+     +L E +  +     T         N V++MT+H+
Sbjct: 495 NKEDRVKNIEELMNSIREIEREYPGITLSEYLEFISLTSATDSMDDEE--NFVKLMTIHS 552

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE   VF+      +F  +                                     L
Sbjct: 553 SKGLEFDFVFIAGMEEGLFPGE----------------------------------ASIL 578

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                EE  RL YV +TRA  +L +   S  
Sbjct: 579 NDEDLEEERRLCYVAITRAKKELRLSHASER 609


>gi|289565872|ref|ZP_06446313.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF]
 gi|289162332|gb|EFD10191.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF]
          Length = 744

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 120/760 (15%), Positives = 242/760 (31%), Gaps = 138/760 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 91  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +A    A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    + + +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 382 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  +  + +  +    +L      +    +  
Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++ ++ T            +S   PE   +  +   
Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 687


>gi|86133361|ref|ZP_01051943.1| UvrD/REP helicase [Polaribacter sp. MED152]
 gi|85820224|gb|EAQ41371.1| UvrD/REP helicase [Polaribacter sp. MED152]
          Length = 774

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 103/643 (16%), Positives = 210/643 (32%), Gaps = 121/643 (18%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAH 136
            T  K +   +   K   +  ++   ++  I +R  FN   + ++ + +       +   
Sbjct: 122 GTIIKEMNLDKERYKPKQILGRISSFKNSLITVRAYFNNSDLQEADMHASRPKVGDIYRE 181

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y +   K+  +DF+DL++ TN+LL +      +  K      +I++DE QDT+  Q+ ++
Sbjct: 182 YVDRCFKSGAMDFDDLLLRTNELLARFPD---VLAKYQDRFRYIMVDEYQDTNHSQYIIV 238

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           R+L + F          + +  VGD+ QSIYSF GA  + +L  ++              
Sbjct: 239 RALADRF----------QNICVVGDDSQSIYSFRGANIQNILNFQKDYP--------DVK 280

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
             +L  ++RST +I+   + V +  +                          ++W     
Sbjct: 281 TFKLEQNYRSTKNIVNAANSVIARNKTKLDK---------------------EVW----- 314

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              +          +  D            R +A +I         + N     +   + 
Sbjct: 315 -TSNDAGDSINVMRTISDGEEG--------RFVAQSI---------WENMMNHQLTPDNF 356

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VL R    +  I    R       I               IKD+++  R +++  D+ +
Sbjct: 357 CVLYRTNSQSRAIEDALR----KKNIDYTIYGGISFYQRKEIKDILSYLRILINPNDEEA 412

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCG-------ISKFQHVIKYI 488
              ++  P        I ++    +   ++++E I+               K Q+ +  I
Sbjct: 413 LKRIINYPARGIGATTIDRLTIAANHYKKSIFEIIKYIDKIDIKINSGTKKKLQNFMNMI 472

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN-----E 540
             L   AQ  +  +   +++   +  +        E    ++ + E LN          E
Sbjct: 473 LRLQIEAQTKNAFEIAEVVVKETRLIKDLEKDGTPEAVSKVENVQELLNGIKDFITDKIE 532

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +   +SL   + ++        +    +   V +MT+H +KGLE   V++V     +F  
Sbjct: 533 EGEDASLTTFLEDVALATDFDSK-KDNDKPSVSLMTIHQSKGLEYLYVYIVGLEENLFPS 591

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              +    +S  EE  RL YV +TRA  
Sbjct: 592 ----------------------------------AMSMNTRSELEEERRLFYVALTRAEK 617

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
              +          K         + +           K+   
Sbjct: 618 VAYLSYAQTRYRWGKLVDAEPSRFLEEIDDQYLHYIAPKMPEP 660


>gi|261207461|ref|ZP_05922147.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6]
 gi|260078352|gb|EEW66057.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6]
          Length = 747

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 120/760 (15%), Positives = 242/760 (31%), Gaps = 138/760 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 34  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 93

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 94  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 153

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +A    A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 154 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 211

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 212 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 260

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 261 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 312

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 313 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 337

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 338 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 384

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    + + +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 385 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 444

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  +  + +  +    +L      +    +  
Sbjct: 445 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 504

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 505 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 564

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 565 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 610

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 611 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 650

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++ ++ T            +S   PE   +  +   
Sbjct: 651 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 690


>gi|219683935|ref|YP_002470318.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219621585|gb|ACL29742.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 907

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 105/653 (16%), Positives = 209/653 (32%), Gaps = 117/653 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TYKMFKSTLASLTLAKYLNAHYE 138
           K    + I  +  D K +L  +     +    F     +  F        +   + A Y+
Sbjct: 144 KRFTPRSILARISDYKNQLTDASTALAQYAPDFKPGMRHYSFGQIGDPEPVYAVVYAEYQ 203

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                   +DF+DLI+ T +LL+ +     +      +  +IL+DE QDT+  Q+ ++R 
Sbjct: 204 YRLALANAVDFDDLIVRTVELLRTQPH---VAEYYRHKFRYILVDEYQDTNHAQYVLVRE 260

Query: 199 LTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           L         D    +   S P  +  VGD  QSIY+F GA+ + +   ++         
Sbjct: 261 LAGVDAHEPSDPMATEAGKSGPAWVTVVGDSDQSIYAFRGADIRNIQDFEKDFP------ 314

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   + V +     +                        LW
Sbjct: 315 --DARTIMLEQNYRSTQTILDAANAVIAHNSARKPKK---------------------LW 351

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +          +   + +         +A + A  IA  I ++            + +
Sbjct: 352 TAL------GEGDKIIGYAA--------DTAQLEAHWIAQQILHLHEE---------KGL 388

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ ++ R    +  +            I           +   +KD +A  + I++ 
Sbjct: 389 PYSDMAIMYRANAQSRSLEEGL----IQAHIPYQLIGGTKFYERREVKDAIAYLQAIVNP 444

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN------CGISKFQHV 484
            DD++   +L  P          ++        +T +  I++  +         +  +  
Sbjct: 445 ADDINMRRILNVPKRGLGTRAESQLTLFANEHNQTFWWAIEQLEDIEGMSARTANAVRAF 504

Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
            + +  L   A      P +    +L      +        +    ++ L +  +     
Sbjct: 505 RELMTSLRTFAGEHDSKPSEIVAQVLEQSHMLELLRKSEDPQDESRVENLSQLQSVAAEF 564

Query: 540 EQNSYS-SLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           EQN+   +L   +        + +      +  +V +MT+HTAKGLE P+VFL       
Sbjct: 565 EQNTPDTTLAGFLETTALVADSDQLPGEGHDSGKVTLMTLHTAKGLEYPIVFLTGMEQGT 624

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H                                             E  RL YVG+TR
Sbjct: 625 FPHS----------------------------------RAMENMDELSEERRLAYVGITR 650

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           A  +L + + +  +   + ++      + +   +    K+ +      +  W 
Sbjct: 651 AKRRLYLTRAAVRAQWGRQSEMMPSQFLDEIPDSLIDWKRREAGMERMRSGWR 703


>gi|134300187|ref|YP_001113683.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1]
 gi|134052887|gb|ABO50858.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1]
          Length = 730

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 104/601 (17%), Positives = 196/601 (32%), Gaps = 120/601 (19%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +         +++  T   +          +A  +   Y+E   KN  +DF+DLI+ T  
Sbjct: 136 RAMLSAISGAKNKLQTPAQYDRQAFEYFEQVAARVYRLYQEKLFKNNAVDFDDLIMLTVR 195

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           L K+      +      +  +IL+DE QDT+  Q+ ++  L E          S R +  
Sbjct: 196 LFKENPD---VLAYYQNKFKYILVDEYQDTNHTQYVLVNMLAE----------SHRNVCV 242

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  QSIY + GA+   +L  +R           +  +++L  ++RST +IL   + V 
Sbjct: 243 VGDPNQSIYKWRGADINNILDFERDYP--------EAKVVKLEQNYRSTGNILQAANAVI 294

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                A+ +            +  G+   + ++                           
Sbjct: 295 KNNAEAKDM---------KLWTSKGEGNRIHIYRA------------------------- 320

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +    +  IA  + ++               + +D+++L R    + +   +      
Sbjct: 321 -ENERFESMYIADRVKDL---------RFSHNRKYRDMVILYRTHAQSRVFEEVF----L 366

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I           D   IKDL++  R I +  D  S + ++  P        I K+  
Sbjct: 367 RQGIPYSIFGGQKFYDRKEIKDLLSYLRVIANPVDSQSLLRIINVPKRGVGAASIEKLTN 426

Query: 459 QRHETE-------TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
              E +        + + I         + + +   +  L    +F S  +    +L   
Sbjct: 427 FATERDLTVLMALALVDDIPGVPAKARKQCRELADNLASLKKQVEFLSVTEITEEVLNRT 486

Query: 512 KGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ---NSYSSLQELISELEQYPPTIKRAH 565
             + +       E     + L EFL  T   ++        L + +S +       +   
Sbjct: 487 GYKAELELENTVEARTRLENLQEFLTVTKEYDKQQGEETGGLADFLSTISLVTDLDRHDP 546

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            A  +++ +MT+H+AKGLE PVVFL      VF H                         
Sbjct: 547 QA--DQITLMTLHSAKGLEYPVVFLTGMEEGVFPHSRALYDEEELEEERRL--------- 595

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                                     YVG+TRA ++L I      +   ++N       +
Sbjct: 596 -------------------------AYVGITRAEEELYITHCWERTLFGRTNMNAKSRFL 630

Query: 686 Y 686
            
Sbjct: 631 E 631


>gi|317407330|gb|EFV87300.1| DNA helicase II [Achromobacter xylosoxidans C54]
          Length = 762

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 114/673 (16%), Positives = 214/673 (31%), Gaps = 143/673 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L    +T +    K ++               +  Q      ++
Sbjct: 93  LRAHHRDAGLPQTFQILD---VTDQLAAIKRLMKANGVDDEKYPP---RDVQRFINGAKE 146

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   ++  A       +   YE   ++  V+DF +L++   +LL +    A +R  
Sbjct: 147 EGLRPADVEAYDAHRRRLIEIYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 203

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   HIL+DE QDT+ +Q++ +R L                +FAVGD+ QSIY+F GA
Sbjct: 204 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------GGAAIFAVGDDDQSIYAFRGA 253

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R             ++I L  ++RS   IL   + +        G +    
Sbjct: 254 NVGNMSDFERDYAH--------GTVIRLEQNYRSYGHILDSANALIGHNSGRLGKN---- 301

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW         Q   +          + ++ S  + A+ I   
Sbjct: 302 -----------------LW-------TDQGEGEPV-------RVIEQPSDGMEAQWIVDE 330

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I   ++           ++I VL R    + +I            I          
Sbjct: 331 IRSLIHEGSL----------RREIAVLYRSNAQSRVIEHAI----FSAGIPYKVYGGLRF 376

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   IK  +A  R + +  DD S++ ++  P        + ++    R    ++Y  + 
Sbjct: 377 FERQEIKHALAYLRLMANPHDDTSWMRVVNFPTRGIGARTLEQLADAARAHDSSLYAAVA 436

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530
             A  G S      + IH +    +     +    +L A      + + R G E ++ L+
Sbjct: 437 LVAGKGGSNLAQFAQLIHRMTEETRDLPLPEMVEHMLEASGLNAHYKAEREGAERLENLN 496

Query: 531 EFLNFTLRNEQNS------------------------------YSSLQELISELEQYPPT 560
           E +                                           L  L + L      
Sbjct: 497 ELITAAAVFASEENYDGMPAGVVPEQATSSTLMPGVVDAAPVASDGLTPLAAFLSHAALE 556

Query: 561 I-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                     + V++MTVH AKGLE   VF+      +F H++                 
Sbjct: 557 AGDNQAQQGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENS---------------- 600

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                              L++S  EE  RL+YV +TRA  +L I    +     ++   
Sbjct: 601 ------------------ILEQSGLEEERRLMYVAITRARQRLYISLAQSRMLHGQTRYA 642

Query: 680 TWYDMVYDSFHND 692
                + +     
Sbjct: 643 MRSRFLDEIPEQH 655


>gi|23098637|ref|NP_692103.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis
           HTE831]
 gi|81746699|sp|Q8ERW5|ADDA_OCEIH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|22776864|dbj|BAC13138.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis
           HTE831]
          Length = 1243

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/686 (17%), Positives = 247/686 (36%), Gaps = 39/686 (5%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
                 +K    +++        +K+++           ++   +       + L K   
Sbjct: 289 KVDCDEEKKTKVKKLRDSYKKRFQKMQEVWFARNLDAHVYDMRVLAPVIKHLVELVKQFQ 348

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLL------KKRDVSAWIRYKIDQEINHILIDEVQDT 188
             + + KK+  V+DF DL      +L      ++  + + +  ++ ++   +L+DE QDT
Sbjct: 349 DSFAKVKKEKAVVDFSDLEHYCLQILIDESSTEEEVIPSTVAMQLQRQFTEVLVDEYQDT 408

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +++Q  +++ +++              +F VGD KQSIY F  AEP   + + +      
Sbjct: 409 NMVQETILQLISD--------RQGSGNMFMVGDVKQSIYRFRHAEPSLFIDKYKRFS--- 457

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVG 306
            N+      I+L  +FRS  ++L   + +F     E+   +S D    + + +       
Sbjct: 458 -NSDDPSIRIDLARNFRSRENVLLGANYIFRQLFDEDLGEISYDDAAELIYGNKMYDDHP 516

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI----SNMIGTDTI 362
                E ++  ++S+   Q ++  +  D    +  A   A++I   I      +      
Sbjct: 517 LEAKPELLLIDNNSEDVEQSDNEETVEDLEKAQIEARAYAKQIKNWIGTPEDEIPMQVVD 576

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
            + GK+R +Q KDI++L+R       I    +       I    +      + + IK ++
Sbjct: 577 KATGKQRDLQYKDIVILMRSMTWASTIADELQ----QQGIPTYADLSTGYFEAIEIKVML 632

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI---- 478
           +  + I +   D+    +L+SP+    ED +  I     +        +   N       
Sbjct: 633 SFLKVIDNPRQDIPLASILRSPIIGLEEDQLASIRLADRKASFYEAVQRYLQNEQDNSDT 692

Query: 479 -SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFT 536
                  ++ +++    A+  S  +    I           +   G +    L    +  
Sbjct: 693 VKSLIRFMEMLNDFRQSARQGSLSELIWDIYRETGYYDFVGAIPGGKQRQANLRALYDRA 752

Query: 537 LRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
              E  S+  L   +  +E+           RA S   + VRIMT+H +KGLE P+V L 
Sbjct: 753 RGYESTSFRGLYRFLRFIERMEERGKDLGAARALSEQEDVVRIMTIHKSKGLEFPIVILG 812

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               +       +K  +   L         + + +        + +   +    E  R+L
Sbjct: 813 GMNKEFNQRDLSEKYLLHKDLGFASKYIDPVKRIQYPTLYYHAVRQAKFRDMLSEEIRVL 872

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YV +TRA ++L++     +  +K    +   D          R++     + +       
Sbjct: 873 YVALTRAKEKLLMVGTVPSIEKKLEKWQRIVDHPSWVLPAYFRMESKTYLDWVGPALLRH 932

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQ 737
                   EN   +  E+I Q   + 
Sbjct: 933 VGSEKIRTENIGNQVLESINQDPSDW 958



 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 98/275 (35%), Gaps = 21/275 (7%)

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
            + DM   S  ND+ +K+        + E    +       +     ++       +    
Sbjct: 968  YMDMKDSSMDNDDNLKEKVFNWESVETEQEGLKNDVDARLSYEYAYKQATVFRAKQSVTE 1027

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT---LP 797
             K    +K+D ++  IL PS      + N            +G  +H ++Q +     L 
Sbjct: 1028 LKRQQEVKDDYSDQQILPPSHGPIGKRPNFLQKKLKLSPAEKGTALHTVMQHLPMTHVLS 1087

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKI 855
            E + +  I     +        E  ++ + ++ R     + +  +S +  + EV  S  +
Sbjct: 1088 EPEIEENIEKMVLEE--KLTRMEADSINIRAVERFFHTEIASKIISGNDMHREVPFSIML 1145

Query: 856  NCPK----------KDIIISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHIPYTHI 901
               +          + ++I G ID +  +     I +YKT         Q+ + + + + 
Sbjct: 1146 PASEVYANWKDQSNEKVLIQGVIDCLLQADTGWIILDYKTDFIEDNPTSQKEQELIHRYQ 1205

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
             Q+++Y + ++  +        L + S+  +  +P
Sbjct: 1206 TQMTLYRRAIEQIWKQPVEQTYLYFFSQQLLIEVP 1240


>gi|148266336|ref|YP_001233042.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
 gi|146399836|gb|ABQ28469.1| ATP-dependent DNA helicase PcrA [Geobacter uraniireducens Rf4]
          Length = 744

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 109/777 (14%), Positives = 234/777 (30%), Gaps = 133/777 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  ++++  + +    V                 + ++ + L        +   
Sbjct: 27  GAGSGKTRVIVHRIAYLIKERSVPPWQILAVTFTNKAAGEMRERVEKLLG-GGELPLIST 85

Query: 66  FSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F    +  L ++               ++  K   ++  +L         K       + 
Sbjct: 86  FHSACARILRREIHHLGYDANFAIYDDKDAEKLLKEIVAELNLDEKRYPVKSFIAAIDEC 145

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           ++   T +              + A Y+E  +K   LDF DL++ T  L ++      + 
Sbjct: 146 KNAGKTPEDVPVGDFMAEKVAQVYAAYQERLRKCNALDFGDLVLLTVRLFEQFPE---VL 202

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            +  +    I +DE QDT+ +Q+ +++ L              + L  VGD+ QSIY + 
Sbjct: 203 VRYQERYRWIQVDEYQDTNPVQYRLVKLLAG----------KRQNLCVVGDDDQSIYRWR 252

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+ + +L  +               +++L  ++RST +IL     V +     +G +  
Sbjct: 253 GADIRNILDFEEDFP--------GVKVVKLEQNYRSTQNILAAAGAVVAKNRGRKGKT-- 302

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW             ++  +    D   +       AR + 
Sbjct: 303 -------------------LW-------TENPPGERIVYRRLADEREE-------ARYVC 329

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I   +      +           + V  R    + ++            I        
Sbjct: 330 RQIEQHVRKGGDLAG----------VAVFYRANAQSRVVEDAMVAD----GIPYHMVGGM 375

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY 469
                  IKD++A  + +++  D+++   ++ +P        + KI    +      Y+ 
Sbjct: 376 RFYARQEIKDILAYLKVLINPADEIALKRIINTPARGIGHATVDKISELAQRRGILFYDA 435

Query: 470 IQKFANC------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           +++ A           K    +  +     + +  S  D  + ++       +       
Sbjct: 436 LREAAESGLLGSGPRGKIAGFVALLEGFESMVETSSLKDLASRVILETGYAVKLQEERSE 495

Query: 524 EVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           E  D    L E L+     E+ ++  +L   + ++                   +MT+H 
Sbjct: 496 EAQDRLANLQELLSALEEFERVSAERTLAAFLEQVALISDLE--QEGKGRESATLMTLHA 553

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF++    ++F H                                       
Sbjct: 554 AKGLEFPLVFMIGMEERLFPH----------------------------------ARSLE 579

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL YVGMTRA ++L +          +         + D  H    ++   
Sbjct: 580 DPEQMEEERRLCYVGMTRAQERLYLTNARRRRIFGQEQYNPPCRFLADIPHALLDMEDEG 639

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             +    D+    E      E         + ++  E +   ++         E Y 
Sbjct: 640 YQSGFGFDKGRGEEPGARAEEKPARHNLAAVFEMELEPEFADEVRVVPDEAEGEIYP 696


>gi|270291088|ref|ZP_06197311.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4]
 gi|270280484|gb|EFA26319.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4]
          Length = 757

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/700 (16%), Positives = 214/700 (30%), Gaps = 145/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L     ++     
Sbjct: 30  GAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTNKAAREMRERVANLLGEVASEIWVST 89

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L +        +     + +++   +K  L     +      R    K+  +
Sbjct: 90  FHALCVRILRRDIEQIGYNRAFSIADPSEQRTLIKHVLADLNYDPKVYDPRSVLGKISNA 149

Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               +                   +   Y+   K N  LDF+DLI+ T  L ++   +  
Sbjct: 150 KNDLMTPADYQENASNPHDEAVGKIYDEYQRRLKANQALDFDDLIMQTIRLFEQSPET-- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q++++  L + F          R L  VGD  QSIY 
Sbjct: 208 -LQFYQNKFHYIHVDEYQDTNQAQYQLVTMLAKGF----------RNLCVVGDSDQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +                + L  ++RST +IL   + V +     +   
Sbjct: 257 WRGADMQNILNFESDYP--------DAHTVMLEQNYRSTQNILNAANDVIANNVERKPK- 307

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               QLW              + S+        +          
Sbjct: 308 --------------------QLW-------TDNDEGAKISYYRGQTGNDEVH-------F 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   I                 D  +L R    + L+            I      
Sbjct: 334 IVQQIRKQIEE---------NNFDYGDFAILYRTNAQSRLVEDTF----VKANIPYTMVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   I+D+++    I ++ED +SF  ++  P        + K+       + ++ 
Sbjct: 381 GHKFYDRKEIRDVLSYLTLIANEEDSMSFERVINEPKRGIGATSMAKLQAFADENSWSLL 440

Query: 468 EYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           +  +        A    +  +   K I  L   A+F S  +    +L     R       
Sbjct: 441 QAARNVQIANGIARRTRNAIEDFAKTIDALRKSAEFLSITELTETLLDKTGYRAALEQTR 500

Query: 522 GNEVI---DVLDEFLNFTLRNEQNSYSS-------------LQELISELEQYPPTIKRAH 565
             E     + ++EFL  T + ++ + +              L + +++L           
Sbjct: 501 TMEAEARLENINEFLTVTKQFDEQNDAEGTEVADENGDNVRLVDFLADLALVSDQD--DV 558

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               + V +MT+H AKGLE PVVFLV     VF                           
Sbjct: 559 EEEPSAVTLMTLHAAKGLEFPVVFLVGMEEGVFPLS------------------------ 594

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                              EE  RL YVG+TRA  +L + 
Sbjct: 595 ----------RAATDPDELEEERRLAYVGITRAQKKLYLT 624


>gi|256545197|ref|ZP_05472563.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170]
 gi|256399238|gb|EEU12849.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170]
          Length = 729

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 188/547 (34%), Gaps = 118/547 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +  +YE+ K +   LDF+DLI+ T +L  +    +        +  ++ +DE QDT+  Q
Sbjct: 170 IYKNYEKKKFEYNSLDFDDLILKTLELFAED---SNTLKYYQDKFEYLFVDEYQDTNKSQ 226

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+I+ +                +  VGD  QSIYSF GA+   +L  ++          
Sbjct: 227 YELIKFI----------GKGHNNVRVVGDADQSIYSFRGADINNILDFEKDF-------- 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           +    I+L  ++RST++I+ V +K+       +  +                     LW 
Sbjct: 269 KDAKTIKLEENYRSTSNIINVANKLIKNNSERKEKN---------------------LW- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  S+ +  +  +        +        + +   I++++              +
Sbjct: 307 ------TSKNDGSEVLYKKSSVESEEG-------KFVIDEINSLLNDG----------YR 343

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            KD+ +L R    + +          D              D   IKDL++  + +++ +
Sbjct: 344 LKDMAILYRMNAQSRIFEEYLMKNLLD----YKVVGGLKFYDRKEIKDLISYLKILVNPK 399

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVI 485
           DD+S   ++  P     +  + K+  + +       E            +   S  +   
Sbjct: 400 DDISLKRIINEPKKGIGDKTVEKLEKEANKLGFSLTELVCDPSLFSNLPSKLKSSCEKFY 459

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             + E+    +     +    IL      +     +  E    ID L+EF++     + N
Sbjct: 460 NPLAEIFDNYKDYDIVELIEEILDKSGYIRALEESYSVENRSRIDNLNEFISSAAEYQSN 519

Query: 543 SYSSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      +   LE          + +  + + +MT+H+AKGLE  V F+V     +F  K
Sbjct: 520 NPED--NIHDYLENLSLLSDLDKTEDKDDSISLMTIHSAKGLEFKVCFVVGMDEGLFPSK 577

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +   EE  R+ YV +TRA ++
Sbjct: 578 RSID-----------------------------------EGNIEEERRICYVAITRAMEK 602

Query: 662 LIICKHS 668
           L +    
Sbjct: 603 LYLSSAE 609


>gi|219667567|ref|YP_002458002.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
           DCB-2]
 gi|219537827|gb|ACL19566.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense
           DCB-2]
          Length = 755

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 115/627 (18%), Positives = 200/627 (31%), Gaps = 131/627 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ +   Y +    N  LDF+D+I+ T  L ++      +  +   +  +IL+DE QDT+
Sbjct: 168 AERVYELYLKKLLANNALDFDDIIMLTVRLFRENPE---VLSQYQDKFRYILVDEYQDTN 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++  L + +          R L  VGD+ QSIY F GA+ + +L  +R   +   
Sbjct: 225 HAQYALVNLLAKKY----------RNLCVVGDDDQSIYMFRGADVQNILDFERDYPE--- 271

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   ++L  ++RST  IL   + V       +  S                     
Sbjct: 272 -----AKTLKLEQNYRSTKSILQAANSVVQNNTERKEKS--------------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW           + Q   +    +   +       AR +   I  ++            
Sbjct: 306 LW-------TENEDGQPIVYYVADNEHDE-------ARYMGERIQRLLN---------VE 342

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  +  VL R    + +I            I           + + IKD++A  R + 
Sbjct: 343 GRKFNEFAVLYRTNAQSRVIEERF----MKEGIPYRIFSGLKFYERMEIKDILAYLRILH 398

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-------YEYIQKFANCGISKFQ 482
           +  D +SF  +L  P     E  + KI    +E E          +YI +  +       
Sbjct: 399 NPADQVSFSRVLNVPKRGLGESTLEKILDYANEQEMPVLDAIMEADYIPELQSRAKKPLL 458

Query: 483 HVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
                + EL  + A   S       +L         +S    E     + L EFL+ T  
Sbjct: 459 AFAHLMQELRALAAAESSVTKLVEEVLKRTGYWDNLVSDKSPEAEARLENLREFLSVTAE 518

Query: 539 NEQN-------------SYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLE 584
            ++                + +  L   LEQ     +        + V +MT+H+AKGLE
Sbjct: 519 YDEKADNYETAVVQEGIEDALVPGLTGFLEQVSLVAQIDSLDQADDAVVMMTIHSAKGLE 578

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVVFL      +F         ++                                   
Sbjct: 579 FPVVFLGGMEEGIFPSSRSMLDPVL----------------------------------L 604

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            E  RL YV +TRA ++L +            + +    ++  +      D        T
Sbjct: 605 AEERRLCYVAITRARERLYLAYAQQRMLYGRTQYNRPSEFFQEIPTHVLVDRDPIDPPPT 664

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREE 728
            +       A   +T     +P    E
Sbjct: 665 RAQKAHSAAARPAATPSGGPSPWRTGE 691


>gi|296141008|ref|YP_003648251.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM
           20162]
 gi|296029142|gb|ADG79912.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM
           20162]
          Length = 802

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 104/665 (15%), Positives = 194/665 (29%), Gaps = 132/665 (19%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
             +    L +  + +     K    + +  +  +LK +L         I          K
Sbjct: 140 DADDSRRLLTMIVKEMGLDAKKFAPRALATQISNLKNEL---------IGPEDAAADAAK 190

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
           +          +   Y+   +     DF+DLI  T  LL+       +     +   H+L
Sbjct: 191 TGEPFAVTVAEVFGTYQARLRSANAFDFDDLIGETVGLLQSHP---NVAQYYRRRFRHVL 247

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+  Q+ ++R L            +P  L  VGD  QSIY+F GA  + +   +
Sbjct: 248 VDEYQDTNHAQYILVRELVGLEEDEDGV--TPSELCVVGDADQSIYAFRGATIRNIEEFE 305

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R               I L  ++RST  IL+  + V S     +                
Sbjct: 306 RDFPN--------AETILLEQNYRSTQTILSAANAVISRNAGRREKK------------- 344

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW         Q +    +     +   +       A  +   I  +     
Sbjct: 345 --------LW-------TDQGDGALITGYVADNEHDE-------ASFVVSEIDALSDNG- 381

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    I+  D+ V  R      ++  +       + +           +   ++DL
Sbjct: 382 ---------IKYSDVAVFYRTNTAARVLEEVF----IRHGVPYKVVGGVRFYERKEVRDL 428

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK--------- 472
           +A  R I +  D +S   ++ +P     +     +        T +              
Sbjct: 429 VAYLRAIDNPNDTVSLQRIVNTPRRGIGDRAQACLTVHAENHGTNFGGAIADAVEGGVAM 488

Query: 473 FANCGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VID 527
                 +        + EL  IA        D    ++     R +       +    +D
Sbjct: 489 LNPRSRNAIATFSGLMTELRRIADDDESDIGDLLDAVVEKTGYRAELEGSSDPQDGARLD 548

Query: 528 VLDEFLNFTLRNEQN------------SYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            ++E ++                       SL   +  +       +     +   V +M
Sbjct: 549 NIEELISVAREFSAQDFTDVVADEGAPEPGSLAAFLERVSLVADADQVPDD-DAGVVTLM 607

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+HTAKGLE PVVF+       F H                                   
Sbjct: 608 TLHTAKGLEFPVVFVTGWEDGQFPHMRALG------------------------------ 637

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                ++   E  RL YVG+TRA ++L + +    S      Q      + +   +    
Sbjct: 638 ----DENELAEERRLAYVGITRARERLYVSRAMIRSTWGDPMQNPESRFLAEIPQHLIDW 693

Query: 696 KKIKL 700
           ++++ 
Sbjct: 694 RRLEP 698


>gi|317132106|ref|YP_004091420.1| UvrD/REP helicase [Ethanoligenens harbinense YUAN-3]
 gi|315470085|gb|ADU26689.1| UvrD/REP helicase [Ethanoligenens harbinense YUAN-3]
          Length = 782

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 110/737 (14%), Positives = 226/737 (30%), Gaps = 133/737 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDIN-KYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E    + + L       +      + S         I K      ++      ++  
Sbjct: 119 AAGEMKSRLEQMLG---EQALDIWACTFHSACSRILRREIDKLELGYSRSFTIYDTDDSL 175

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            +L           + N   +         KE+              +   K+       
Sbjct: 176 RVLRECCRDVAGDDR-NFANKTALPAISRAKEQNMSPAAFEAAASGDYRLQKI------- 227

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y++A ++   LDF+D++  T  L +K      +     +   ++L+DE Q
Sbjct: 228 ----ASVYYKYQQALRQANALDFDDMLRLTVMLFEKNPD---VLDHYARRFRYVLVDEYQ 280

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q+++I  L              + L  VGD+ QSIY F GA  + +L  ++  + 
Sbjct: 281 DTNPVQYQLISLLAG----------GHQNLCVVGDDDQSIYKFRGATIENILSFEKQFKH 330

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RST+ IL V + V +     +                     
Sbjct: 331 --------ARVIKLEQNYRSTSAILGVANAVIANNTGRKSKK------------------ 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW           +        + D   +       A  IA TI   +         
Sbjct: 365 ---LW-------TENPDGDPVKVRRFEDEATE-------ALFIANTILENVKDG------ 401

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               ++  D  V+ R    +  I            I           D + I+DLMA   
Sbjct: 402 ----MKFADQAVIYRMNAQSGPIEKAF----VRMGIPYRIIGGHRFYDRMEIRDLMAYLC 453

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE------TVYEYIQKFANCGISK 480
            I +  D+L F  ++ +P  +     +  +     +T        ++    ++ +   ++
Sbjct: 454 VINNPGDNLHFTRIVNAPKRSIGSATMAAVQQIAEQTGQTLYEVFLHCQEYEYFSKKTAR 513

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRN 539
            +  + ++  +  +     PH+    ++                   + L   ++     
Sbjct: 514 IESFMHFMEHMRELRTEILPHELIRTVMEESGYLASLGDDEEAKSRKENLSTLISNAADY 573

Query: 540 EQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E+N    +L+  + E             A  + V +MT+H AKGLE P VF+      VF
Sbjct: 574 EKNADEPTLEGFLEEAALMTDIDNYDGQA--DTVVMMTIHAAKGLEFPAVFIAGMEEGVF 631

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             + +                                         EE  RL YVG+TRA
Sbjct: 632 PGQSVMIYP----------------------------------EQLEEERRLAYVGITRA 657

Query: 659 SDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
             +L +    +        ++    + D + ++  + + ++         +    A    
Sbjct: 658 KRKLNLTCAGSRMLFGATVRNRPSRFLDEIPNNLKDAQDMRPHFERPQPRRAAPAAPIRL 717

Query: 716 THHPENTPLEREETIKQ 732
                + P++ +     
Sbjct: 718 ERPGVSRPVQSKAVFAP 734


>gi|81299966|ref|YP_400174.1| hypothetical protein Synpcc7942_1157 [Synechococcus elongatus PCC
            7942]
 gi|23957809|gb|AAN40822.1| unknown [Synechococcus elongatus PCC 7942]
 gi|81168847|gb|ABB57187.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 1061

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 155/943 (16%), Positives = 304/943 (32%), Gaps = 111/943 (11%)

Query: 2    KNRFGLSLNESYELIYKDL-WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +     +  +  + I +   W      +S  +   + ++      IL  + TL       
Sbjct: 177  REVLAQAQRDRLQQIQQSSDWQAAIEDLSGASWREADALSDQIQQILAWSDTLFD-PANS 235

Query: 61   CIEERFSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
              +  +       LTQ  + +        + +  +   L+++L+   +  + +R      
Sbjct: 236  NWQATYDEFIKLKLTQAGSAKNWGSADTAKLLRTQCKVLRDRLRDE-ESLLSLRPNEADD 294

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                         + +    +  K+++  LDF DL       L+    S  +R    Q  
Sbjct: 295  WNRDQRSRIYEAFETVLKSIDARKRQDRCLDFNDLERGAVRALE----SEAVRSHYQQRW 350

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             +  +DE QDT+  Q +++++L                L  VGDEKQSIY F GA  +  
Sbjct: 351  RYCFVDEFQDTNPTQSQILQAL---------WDPQHLILTLVGDEKQSIYGFRGAATQVF 401

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                     +      +  I+ L  SFR+   +L  +++VF    +             +
Sbjct: 402  RNW------QQQIQQHQGHIVTLSQSFRTHQTLLETINQVFEPVLD------------PY 443

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            +  R  +     L        + +     E             +    A  IA  I   I
Sbjct: 444  QPLRSDRQPPHPLPPIQQLVIEPEEKDSLE------------QARIQEATAIAQQIQTWI 491

Query: 358  GTDTIFSNG---KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                +  +    + R I   DI +L R+R     +  +   + N   I V+ N    L +
Sbjct: 492  QQPLLVWDKPSNQHRPIAYGDIAILCRRR---APLETVYGEVLNQAGIPVLVNGGGSLLE 548

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                 DL AL  F++   +DL+   +L+SP F  S+  ++    +  + +  + + Q+  
Sbjct: 549  TPVGYDLQALLEFLVYPSNDLALATLLRSPAFGLSDAQLY---QRAQQGKGWWSHRQERP 605

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFL 533
                  F   IK +  L+      SP         A        S    +  +      L
Sbjct: 606  ---DPAFAAAIKILEGLLRSRFLESPLRLVQQFDRATGYSAVLASLPQAQRLLADWQALL 662

Query: 534  NFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             F     + +    L     +L+Q    + R      N V +MT+H +KGLE PVV + D
Sbjct: 663  TFLREQPQAHDLELLLRYWKQLQQAEVVLPRPVLEAGNAVTLMTLHGSKGLEWPVVIIPD 722

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
              ++  S             + + G+ +  P  K +           +++   E  RLLY
Sbjct: 723  LTAKPRSQAETVLF------DTELGVALRQPYVKEQAAAYQFFKYRKQQAEDAETRRLLY 776

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA D L++         K +  R+  D++         ++ +   +          
Sbjct: 777  VGFTRARDLLLLTSP------KSAEARSPLDLLAPGLEQ-AAIQPLDPNSGTEIAVTATL 829

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
              +                  +           P                   G  + E 
Sbjct: 830  PTADAPLFWQSTAAIAPQYSELSVSAFADYFRCPALFHFRYTQ-------GHPGAIDGEG 882

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
              + ++    GL++H+ L++    PE                          L   +   
Sbjct: 883  AGTSDRPLQLGLLVHRALELDLRQPEA---------LKPYCAAEDQDLIPQALQLASCFA 933

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
              P+ +         EV++  +++     +++ GR D +       ++ ++KT       
Sbjct: 934  TEPVYSAVREQAQQREVTLHLELSS---GLVLKGRADLVGAD----WVLDFKTDQQP--- 983

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                P  +  QL  Y   L     N+     + ++   ++  I
Sbjct: 984  ---QPENYQLQLWAYAAAL-----NRP-QAAIAWLRHNQLDWI 1017


>gi|322690920|ref|YP_004220490.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455776|dbj|BAJ66398.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 900

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 116/727 (15%), Positives = 219/727 (30%), Gaps = 123/727 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +     +I      L+         +  
Sbjct: 75  AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123
             L     T+     K    + I     DLK  L   ++        F        F + 
Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A YE        +DF+DLI  T +LL+       +         +IL+D
Sbjct: 189 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245

Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L                  S P  +  VGD  QSIY+F GA+ + 
Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++                 L  ++RST  IL   + V S  E  +           
Sbjct: 306 IQDFEQDFPN--------AKTTMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +          +     +  +       A   A+ +A  I+ +
Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                         I   D+ ++ R    +  +         +              +  
Sbjct: 383 HAEA---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ---- 471
            IKD +A  + +++ +DD++   +L  P     +      +   R    + +  +     
Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGVLLAYAREHGTSFFYALMHLDE 489

Query: 472 -KFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
            +      +  +     +  L     A    P +    +L     R +       +    
Sbjct: 490 IEVPTRTATSLRAFRDLMGALSQFTRAHDSKPSEIVAEVLEKSGLRAELEKSVDPQDASR 549

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583
           ++ L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKGL
Sbjct: 550 LENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 609

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL       F H                                         + 
Sbjct: 610 EYPVVFLTGMEQGTFPHS----------------------------------RSMEDTTE 635

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +E  RL YVG+TRA  +L + + +  S   ++        + +   +    K+ +    
Sbjct: 636 LQEERRLAYVGITRAKQRLYVTRAAVRSQWGQAADMMPSQFLDEIPDSLIDWKRREAGVE 695

Query: 704 INKDEWI 710
             +  W 
Sbjct: 696 RMRASWE 702


>gi|293377660|ref|ZP_06623849.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1]
 gi|292643660|gb|EFF61781.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1]
          Length = 744

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 119/760 (15%), Positives = 241/760 (31%), Gaps = 138/760 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 91  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +     A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIVAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    + + +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 382 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  +  + +  +    +L      +    +  
Sbjct: 442 EAAQNVELANIGGKAGQQLGSFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++ ++ T            +S   PE   +  +   
Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVSSKSAT 687


>gi|160933076|ref|ZP_02080465.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753]
 gi|156868150|gb|EDO61522.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753]
          Length = 740

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/731 (16%), Positives = 226/731 (30%), Gaps = 144/731 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVS-DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   L        +   +   +  +                          +
Sbjct: 67  AAGELKERLTAMLGDTGGDVWAATFHSTCARILRRDGDR-----------IGYSSHFTVY 115

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
               S  L +      NI  + I      +  ++  ++D  +   D              
Sbjct: 116 DTDDSKRLVKDCQKALNIDDKMI--SHKSILSEISHAKDSMLSPADYQAAAGSDFRLAKI 173

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y++  ++   +DF+DL+ NT +L ++      +         +I++DE Q
Sbjct: 174 ----GAVYELYQKRLREADAMDFDDLLGNTVELFRQ---CPDVLEYYQNRFRYIMVDEYQ 226

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q+E +R L E            + L  VGD+ QSIY F GA  + ++  ++    
Sbjct: 227 DTNQVQYEFVRLLAE----------KSKNLCVVGDDDQSIYKFRGATIENIMSFEKSYPN 276

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I L  ++RST +IL   + V S  E  +G +                  
Sbjct: 277 --------AKVIRLEQNYRSTKNILNAANAVISNNEERKGKT------------------ 310

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW +       Q              +   S+    A  +A TI   +         
Sbjct: 311 ---LWTENPEGDKIQ--------------IHTSSNEQDEAGFVATTILEQVAKGR----- 348

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  D  VL R    + ++  +         I           +   I+D++A   
Sbjct: 349 -----KYSDFAVLYRMNSQSNILEKVF----VKSGIPYRIIGGHRFYERREIRDMIAYLS 399

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFA-----NCGISK 480
            I +  D++    ++  P  +  +  I           E++ E + +            K
Sbjct: 400 VINNPSDEIRLRRIVNQPKRSIGDKTIATASEIAGALGESLLEVLGRADEFDSLRRASVK 459

Query: 481 FQHVIKYIHELIHIAQFCSP--HDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFT 536
            +     + ELI      S   H+ + LIL      +            I+ ++E  +  
Sbjct: 460 LKAFYDMMQELIDANDDESVSLHELYELILEKTGYIEALRGEKEEAETRIENINELASNL 519

Query: 537 LRN--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
           L+   E    ++L   + E+               + V +MT+H+AKGLE PVVFL    
Sbjct: 520 LKFQEENGEEATLSAFLEEVSLMTDIDNYD--ETADTVVMMTMHSAKGLEFPVVFLPGFE 577

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                    L      +  +E  RL YV 
Sbjct: 578 EGIFPG----------------------------------LQAIYDPNEIQEERRLCYVA 603

Query: 655 MTRASDQLI--------ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +TRA + L         +   ++ +   + +     D++  +   D R   +     + +
Sbjct: 604 ITRAKESLYLLNADSRMLFGSTSRNRPSRFSLEIPLDLINKTREQDWRKPDLGTKMPVAE 663

Query: 707 DEWIAYEWSTH 717
            E      +  
Sbjct: 664 TELRRKSATAA 674


>gi|15615542|ref|NP_243846.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125]
 gi|10175602|dbj|BAB06699.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125]
          Length = 1129

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 138/824 (16%), Positives = 283/824 (34%), Gaps = 82/824 (9%)

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +   A + L +Y  A Y+E K+     DF DL  N   LL + D    ++     +  H+
Sbjct: 323  EVLTAFIDLLQYFAARYKERKQLLSAFDFSDLQRNAVCLLDQED----VQKSCHDQFKHM 378

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT+ +Q +V+  +            +P   F VGD KQSIY F GA+   +   
Sbjct: 379  MVDEFQDTNQMQMDVLTKI------------NPSYQFLVGDGKQSIYRFRGADVTLMNEM 426

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                        ++   IE+  ++R+TA ++  V+ +F+       +             
Sbjct: 427  SEQ-----ARDEKEAQFIEMNTNYRTTAPVIHAVNGLFAHAMKDVSVHS----------- 470

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                   V     + ++   + +  + S      +  ++ +  +    IA  +  M+ T 
Sbjct: 471  -------VPYASLIPAREPEKEDDIRVSLHITKTTEKEKDNDQVPYHHIADRLLEMVRTG 523

Query: 361  --TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
              T+++    R     D+ +L+  R +   +        +D  I           +   I
Sbjct: 524  EPTVWNGESWRSPNWGDMAILIPVRTELLALERAL----SDKGIPYHVYGGVGFYERQEI 579

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC-- 476
             D + L R++    ++L    +L+SP+F  + DD+  +  +  +  T ++ +        
Sbjct: 580  LDFVTLLRWLDRPFEELYLFALLRSPMFGLTLDDLMFVKERFSDELTWFDIVVDKEMASL 639

Query: 477  ------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVL 529
                      F  +  ++   +      S  D    +      +    +   G + +  +
Sbjct: 640  FAERPVVTDAFVRLRTWLDRWVPFRPVPSLIDHLYELFDQTGLKMSLFVQENGMQKVRNV 699

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPV 587
            ++ ++     + N    L +    ++        A       N V IMTVH +KGLE P+
Sbjct: 700  EKLIDVMSGWKTNVLEELLQRFDLIQAEVEKEGEAEVEQVAGNVVHIMTVHASKGLEFPI 759

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V L          K   +      +             K      + + +    +T  E 
Sbjct: 760  VCLPQLDRVPQRDKGQVRYDREMGIVLRHEWEEDDGVVKLETPAFALVKEQADLATMAEN 819

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             RL YV  TRA D L +             Q +    +Y+     E + +++    I +D
Sbjct: 820  KRLFYVAATRARDYLWMTGKE---------QPSTSSWLYEVEEALEEMPELRSHLKIEED 870

Query: 708  EWIAYEWSTHHP--ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                  W       +  P+   +     +   ++   +  P+         +  S     
Sbjct: 871  VASHDRWEKDIQTYKVPPIVPRQPELVPLSVTEMMTFIQDPVAYYERYILGIETSVQHEA 930

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                 +S +  ++    G + HK+ +++           I       A  W   E K+  
Sbjct: 931  KTKQEDSNIDPSK---VGSLAHKVFELVDQG--VTLAGSIEMTLA--AHDWTQDERKHYE 983

Query: 826  LSITRLLE--NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
              I RL    N            +E + S       +   I G ID+I  ++    I ++
Sbjct: 984  EHIQRLFRGVNQHSLQWFGEPVANEWAFSFSF----EGAEIVGEIDKIVKNENEYHIIDF 1039

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            KT+    +    +   +  QL++Y +  +    +  +    ++V
Sbjct: 1040 KTNQIR-RSGAELLRFYEPQLALYAEAYEQLC-HVPVKSASLFV 1081


>gi|58584885|ref|YP_198458.1| superfamily I DNA/RNA helicase [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|58419201|gb|AAW71216.1| Superfamily I DNA and RNA helicase, UvrD [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 638

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 106/557 (19%), Positives = 185/557 (33%), Gaps = 121/557 (21%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +A  +   Y+E  K    +DF DL++    L  +      I      +  +I++D
Sbjct: 162 RPIYIIALKVYHQYQERLKFLNSVDFGDLLLYNIQLFNQ---KTEILSYYQGKFKYIMVD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT++IQ+  ++ L ++             +  VGD+ QSIYS+ GAE K +L+    
Sbjct: 219 EYQDTNVIQYLWLKYLAKE----------HSNICCVGDDDQSIYSWRGAEVKNILKFSDD 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
            +           II+L  ++RST+ IL     V +  +                     
Sbjct: 269 FKN--------AKIIKLECNYRSTSHILATASYVINHNKTRLEKK--------------- 305

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 LW        +    ++ +    +D   +       AR I+  I  +       
Sbjct: 306 ------LW-------TTNIKGEKVNLIKLWDGKAE-------ARFISEQILKL------- 338

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +  D+ VLVR    T ++          Y I           +   ++D++A
Sbjct: 339 -----NKYRFSDMAVLVRATFQTRVLEEYF----IKYSIPYKIISGVKFYERQEVRDVIA 389

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANC 476
             R + +  DDL+F  ++  P  +     + KI T  +    + +E         +    
Sbjct: 390 YLRLVTNNNDDLAFERIVNRPKRSIGPTTLKKIYTVAQGNKTSFFEAAKILVNSNQVIEK 449

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLN 534
                      I     +      H F   I       +   +    G   I+ + E ++
Sbjct: 450 IKLSLNDFFNKIKAWEEMISVKPLHKFVKTIANQSGYIEMLENEEVTGLARIENVKELIS 509

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                +           + LE     ++  +  N + V +MT+H AKGLE P VFL    
Sbjct: 510 SLKNFDNA--------TTFLEHISLVMEVDNMNNDDTVHVMTLHAAKGLEFPCVFLPGWE 561

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F H+                                   +       EE  RL YVG
Sbjct: 562 EGLFPHQRS--------------------------------FEDKSGKALEEERRLAYVG 589

Query: 655 MTRASDQLIICKHSNTS 671
           +TRA ++LII       
Sbjct: 590 ITRAKEKLIISCADRRE 606


>gi|262381917|ref|ZP_06075055.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297094|gb|EEY85024.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 780

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 113/697 (16%), Positives = 207/697 (29%), Gaps = 131/697 (18%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150
           +L   Q      ++   TY  ++     +         L + +   Y+    +   +DF+
Sbjct: 138 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQNRCLQAGAMDFD 197

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN L +       +  K      ++L+DE QDT+  Q  +++ L E         
Sbjct: 198 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 245

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  VGD+ QSIYSF GA    +L+ K +             I +L  ++RST +I
Sbjct: 246 -RHGHICVVGDDAQSIYSFRGANIDNILKFKNLY--------TGCRIFKLERNYRSTQNI 296

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + +                                         + +   +   +T
Sbjct: 297 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGSKVSVFT 329

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           SY D     +        +A  I+ M         G        D  +L R    + ++ 
Sbjct: 330 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 373

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD+++  R I++  D+ +   ++  P     +
Sbjct: 374 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRLIVNPHDEEALKRIINYPTRGIGD 429

Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             + K+         +++       EY     N    K       I   I   +  S  +
Sbjct: 430 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 489

Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553
             TL++               E     + L E L            E     ++ + ++E
Sbjct: 490 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 549

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +             N ++V +MTVH AKGLE   VF+V     +F     K         
Sbjct: 550 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 602

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL YV +TRA    ++    +    
Sbjct: 603 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 634

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K++  T    + D    D +   +      +     A E   H    +P  +   ++  
Sbjct: 635 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGHPAFASPFRQPRAVEDD 691

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                            +      + S       + L
Sbjct: 692 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDLSGL 728


>gi|217964093|ref|YP_002349771.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23]
 gi|217333363|gb|ACK39157.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23]
          Length = 731

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 185 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 241

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 242 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 283

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 284 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 315

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 316 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 359

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 360 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 415

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 416 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 475

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 476 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 535

Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K    +   +  V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 536 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 585

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 586 ------------------------RAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRM 621

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 622 LYGRPSSNQESRFIGEIPRDLLELGNE 648


>gi|293571853|ref|ZP_06682869.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980]
 gi|291608107|gb|EFF37413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980]
          Length = 744

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 119/760 (15%), Positives = 241/760 (31%), Gaps = 138/760 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 91  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +     A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIVAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    + + +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 382 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  +  + +  +    +L      +    +  
Sbjct: 442 EAAQNVELANIGGKAGQQLGSFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++ ++ T            +S   PE   +  +   
Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVSSKSAT 687


>gi|227509969|ref|ZP_03940018.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190575|gb|EEI70642.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 743

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 116/753 (15%), Positives = 237/753 (31%), Gaps = 140/753 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + + +  V   N             + ++   L   S        
Sbjct: 30  GAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLDESGDDVWVST 89

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKI 110
           F  L                 F     + Q+ ++ + + + + D K+   +         
Sbjct: 90  FHALCVRILRRNIDQLGFNRAFTIADTSEQRTLVKRVLRELNIDPKKFDPRAVLSSISNA 149

Query: 111 RDRFNTYKM--FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T K    ++      +   + A Y+   ++N  LDF+DLI+ T +L  +      
Sbjct: 150 KNDLLTPKAFKAQADNDFDQIVADVYARYQAELRQNESLDFDDLIMTTIELFDQFPD--- 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      + ++I +DE QDT+  Q+ ++ +L +            + +  VGD  QSIY 
Sbjct: 207 VLSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAK----------KSKNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  K               +  L  ++RST  +L   + V +   N    +
Sbjct: 257 WRGANMQNILDFKEDYP--------DAHVTLLEQNYRSTKTVLDAANAVIAHNLNRADKN 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW             ++ S+        +  + +  AR 
Sbjct: 309 ---------------------LW-------TENEQGEKISYY-------RGQTENDEARY 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +G                   +L R    + +I            I      
Sbjct: 334 VVAKIQEEMGK---------PKRNYGSFAILYRTNAQSRVIEETL----LKANIPYTMVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I+D +A    + +  D +SF  ++  P     E  + K+         ++ 
Sbjct: 381 GHKFYDRKEIRDALAYLTLLGNPRDSMSFERVINEPKRGIGETSLEKLRTFANDHGWSLL 440

Query: 468 EYIQKFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           E  +          +         + I ++       +  +    IL          S  
Sbjct: 441 EASKNIDLANEISSRAKNSISMFEQIISDVAKKLDTMTITELTEEILDKSGYLSTLKSSK 500

Query: 522 GNEVI---DVLDEFLNFTLRNEQNSY-----SSLQELISELEQYPPTIKRAHSANHNEVR 573
             +     + L+EF++ T + +Q++       +L   +S+L               +EV 
Sbjct: 501 SLQAQTRLENLEEFISVTQKYDQDNPDQGGQDNLVNFLSDLALVSDQD--DLDEKTSEVT 558

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVF++     +F                                   
Sbjct: 559 LMTMHAAKGLEFPVVFIMGMEEGLFPLS-------------------------------- 586

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFH 690
                  +S  +E  RL YVG+TRA ++L +    +       + + +  + + +     
Sbjct: 587 --RAAQDESELQEERRLAYVGITRAKEKLYLTNAYSRMLYGRRQNNPESRFVNEIKPELI 644

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
             E V + +   S   D       +T + +   
Sbjct: 645 QYENVNQQEKPLSTPFDRRTRRATATTYHQPAQ 677


>gi|227551669|ref|ZP_03981718.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330]
 gi|257895731|ref|ZP_05675384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12]
 gi|227179232|gb|EEI60204.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330]
 gi|257832296|gb|EEV58717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12]
          Length = 747

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 119/760 (15%), Positives = 241/760 (31%), Gaps = 138/760 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 34  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 93

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 94  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 153

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +     A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 154 KNSLQTPQDFAKMQGSYYEEIVAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 211

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 212 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 260

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 261 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 312

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 313 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 337

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 338 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 384

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    + + +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 385 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 444

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  +  + +  +    +L      +    +  
Sbjct: 445 EAAQNVELANIGGKAGQQLGSFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 504

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 505 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 564

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 565 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 610

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 611 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 650

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++ ++ T            +S   PE   +  +   
Sbjct: 651 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVSSKSAT 690


>gi|227512902|ref|ZP_03942951.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577]
 gi|227083902|gb|EEI19214.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577]
          Length = 743

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 109/694 (15%), Positives = 216/694 (31%), Gaps = 141/694 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + + +  V   N             + ++   L   S        
Sbjct: 30  GAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLDESGDDVWVST 89

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQEINK-----KSPDLKEKLKKSQDE 106
           F  L                 F     + Q+ ++ + + +     K  D +  L    + 
Sbjct: 90  FHALCVRILRRNIDQLGFNRAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNA 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +          ++      +   +   Y+   ++N  LDF+DLI+ T +L  +    
Sbjct: 150 KNDLLT--PKAFKAQADSDFDQIVADVYERYQAELRQNESLDFDDLIMTTIELFDQFPD- 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +      + ++I +DE QDT+  Q+ ++ +L +            + +  VGD  QSI
Sbjct: 207 --VLSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAK----------KSKNICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + +L  K               +  L  ++RST  +L   + V +   N   
Sbjct: 255 YGWRGANMQNILDFKEDYP--------DAHVTLLEQNYRSTKTVLDAANAVIAHNLNRAD 306

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW             ++ S+        +  + +  A
Sbjct: 307 KN---------------------LW-------TENEQGEKISYY-------RGQTENDEA 331

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R +   I   +G                   +L R    + +I            I    
Sbjct: 332 RYVVAKIQEEMGK---------PKRNYGSFAILYRTNAQSRVIEETL----LKANIPYTM 378

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  D   I+D +A    + +  D +SF  ++  P     E  + K+         +
Sbjct: 379 VGGHKFYDRKEIRDALAYLTLLGNPRDSMSFERVINEPKRGIGETSLEKLRTFANDHGWS 438

Query: 466 VYEYIQKFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           + E  +          +         + I ++       +  +    IL          S
Sbjct: 439 LLEASKNIDLANEISSRAKNSISMFEQIISDVAKKLDTMTITELTEEILDKSGYLSTLKS 498

Query: 520 RFGNEVI---DVLDEFLNFTLRNEQNSY-----SSLQELISELEQYPPTIKRAHSANHNE 571
               +     + L+EF++ T + +Q++       +L   +S+L               +E
Sbjct: 499 SKSLQAQTRLENLEEFISVTQKYDQDNPDQVGQDNLVNFLSDLALVSDQD--DLDEETSE 556

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVF++     +F                                 
Sbjct: 557 VTLMTMHAAKGLEFPVVFIMGMEEGLFPLS------------------------------ 586

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                    +S  +E  RL YVG+TRA ++L + 
Sbjct: 587 ----RAAQDESELQEERRLAYVGITRAKEKLYLT 616


>gi|257884411|ref|ZP_05664064.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501]
 gi|257887195|ref|ZP_05666848.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733]
 gi|257820249|gb|EEV47397.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501]
 gi|257823249|gb|EEV50181.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733]
          Length = 747

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 119/760 (15%), Positives = 241/760 (31%), Gaps = 138/760 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 34  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 93

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 94  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 153

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +     A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 154 KNSLQTPQDFAKMQGSYYEEIVAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 211

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 212 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 260

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 261 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 312

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 313 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 337

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 338 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 384

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    + + +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 385 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 444

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  +  + +  +    +L      +    +  
Sbjct: 445 EAAQNVELANIGGKAGQQLGSFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 504

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 505 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 564

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 565 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 610

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 611 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 650

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++ ++ T            +S   PE   +  +   
Sbjct: 651 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVSSKSAT 690


>gi|290893415|ref|ZP_06556400.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071]
 gi|290557066|gb|EFD90595.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071]
 gi|307571339|emb|CAR84518.1| ATP-dependent DNA helicase [Listeria monocytogenes L99]
          Length = 733

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 186/567 (32%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 417

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537

Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K           V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 588 ------------------------RAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRM 623

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650


>gi|104773602|ref|YP_618582.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422683|emb|CAI97296.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 753

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 121/782 (15%), Positives = 239/782 (30%), Gaps = 135/782 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   +V+  N             + ++   L            
Sbjct: 30  GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89

Query: 66  FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110
           F  L    L +                + Q  ++ + + +   D K+ L +    +    
Sbjct: 90  FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T K ++++       +   +   Y+ + +++ +LDF+DLI+ T  L K    S  
Sbjct: 150 KNCLQTPKQYEASAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 Q+  ++L+DE QDT+  Q+E+ R L + +            +  VGD  QSIY 
Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   +            ++L  ++RST  IL   + V    EN +   
Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         + + ++  +        +        R 
Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +           +  + +D  VL R    +  +            +      
Sbjct: 334 VLAKIKEEVDK---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   IKD+MA  + + +  D +SF  ++  P     +    K+          +Y
Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTTKLAAFADEMGGGIY 440

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E ++       ++    K       +   I  AQ  +  +    IL      +       
Sbjct: 441 EAMRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDFGYIKALKEEEA 500

Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571
                    ++ L EF   T R +    +        L   L +    + +     + + 
Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F                                 
Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEENIFPLSR----------------------------- 591

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               IK    +  EE  RL YVG+TRA ++L +               +    + +    
Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNSQSRFIGEIKDE 648

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
           D  +       S      +         +    +  +  +       +  +       D 
Sbjct: 649 DLDIVASTAPKSSTSFIDLDRLPFAKKSQAKAAQPAKIHRASKAAGAVGAEKKGWHPGDQ 708

Query: 752 NE 753
            E
Sbjct: 709 VE 710


>gi|237714589|ref|ZP_04545070.1| ATP-dependent DNA helicase [Bacteroides sp. D1]
 gi|262406455|ref|ZP_06083004.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22]
 gi|294643703|ref|ZP_06721503.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC
           2a]
 gi|229445358|gb|EEO51149.1| ATP-dependent DNA helicase [Bacteroides sp. D1]
 gi|262355158|gb|EEZ04249.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22]
 gi|292640941|gb|EFF59159.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC
           2a]
          Length = 792

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 103/686 (15%), Positives = 216/686 (31%), Gaps = 125/686 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y +  ++   +DF+DL++ T  L +       +  +   + +++L+D
Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPD---VLTRYQDQFHYVLVD 228

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  +I  LT++           + +  VGD+ QSIYSF GA+   +L   +I
Sbjct: 229 EYQDTNYAQHSIILQLTKE----------NQRICVVGDDAQSIYSFRGADIDNILYFTKI 278

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E     +  S            
Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +A  I+ +       
Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRREYH-- 353

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      +  +L R    + +     R       +               IKD++A
Sbjct: 354 -------YGYAEFAILYRTNAQSRIFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 402

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI +   +   +++  + +          
Sbjct: 403 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATNHGVSLWAAVCEPLSYGLDINK 462

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +K Q   + I   I      + ++  T I+               E     + ++E 
Sbjct: 463 GTHAKLQGFRELIEGFIADQADKNAYEIGTDIIRQSGIINDVCQDTSPENLSRKENIEEL 522

Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N         + E N   SL + +SE+           + +  +V +MTVH+AKGLE  
Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGEKVTLMTVHSAKGLEFK 581

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   +          K    +    + D   +  R+      +    
Sbjct: 608 ERRLFYVAITRAEEHCYLSFAKTRFRYGKMEFGSPSRFLRDIDVDYLRLPHEAGVSRAVD 667

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           +    +             R  +  +        ++   P    I      N   +   G
Sbjct: 668 EGAGRFRREIEGG----FARSTSPSRAPFGSNSSEQRERPKAQIIAPSVPRNLKKVSAVG 723

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQV 792
            ++   + S       G+ + ++++ 
Sbjct: 724 GSSSAQMASSGSASVAGVQVGQMIEH 749


>gi|86608842|ref|YP_477604.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557384|gb|ABD02341.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 787

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 118/679 (17%), Positives = 211/679 (31%), Gaps = 107/679 (15%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139
           K I+T+++N        +    +      +++  T    +    +        +   YE+
Sbjct: 159 KEIVTKQLNLDERKFDPR--SVRYAISNAKNQGWTPADLERNQPNFRGRTIAQVYEIYED 216

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
               N  LDF++LI     L ++ +    +     Q   HIL+DE QDT+  Q+E+IR L
Sbjct: 217 QLAANNALDFDNLIWIPVQLFRQNE---QVLAYWHQRFRHILVDEYQDTNRTQYELIRLL 273

Query: 200 TEDFFVGKNT-HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
             +    ++      R++F VGD  QSIY F GA+   +L  +        +   + ++I
Sbjct: 274 ATNGETRRSQLDWRNRSIFVVGDADQSIYRFRGADFTILLEFQETFGDGLPDDDTR-TLI 332

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RSTA IL   + +              T                          
Sbjct: 333 KLEENYRSTATILQAANALIEKNTERIDKVLRPTR------------------------- 367

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                          D + +       A  +  TI  + G                D  +
Sbjct: 368 ---QQGNPIFLHQADDEIAE-------AEFVVNTIRRLHGQ-------NANAFSWGDFAI 410

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +     +       + I           D   IKD++A  R + +  D  S +
Sbjct: 411 LYRINAQSRPFEEVL----LRWGIPYTVVGGLRFYDRKEIKDVLAYLRVVANPADSFSLL 466

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYI-------QKFANCGISKFQHVIKYIHEL 491
            ++  P     +  + K+             I          A           + I   
Sbjct: 467 RIINVPRRGIGKSTLDKLTEAAAALNVPLWAILSDETSVSSLAGRSAKPVIQFAQLIQHW 526

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQN-SYSSL 547
              A   S       +L      +   ++  +E  +    + E  N   + E+     SL
Sbjct: 527 HRQASQTSAATLIEGLLRDSGYLEDLKAQGTDEAEERAANVMELYNAARQFEEEQEDPSL 586

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           +  +S +                +V +MT+H++KGLE PVVFLV     +F +       
Sbjct: 587 EAFLSNVSLASDLDN--LQEGAEKVSLMTLHSSKGLEFPVVFLVGVEQGLFPN------- 637

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                             +  EE  RL YVG+TRA +QL I   
Sbjct: 638 ---------------------------FRALEDPAALEEERRLCYVGITRAREQLYISHA 670

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                 ++         +   F ++   + I   +            S     + P  R 
Sbjct: 671 R-----ERMLYGNREPAIPSVFLSELPQELIIEFDGRGAVSRQLSHGSGLSLSDAPKARP 725

Query: 728 ETIKQLMDEQKIPKKLFSP 746
              +   ++  I  +L  P
Sbjct: 726 NRRQSRSEQWAIGDRLQHP 744


>gi|294618098|ref|ZP_06697695.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679]
 gi|291595670|gb|EFF26966.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679]
          Length = 744

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 121/760 (15%), Positives = 242/760 (31%), Gaps = 138/760 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 91  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +A    A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    + + +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 382 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  + Q+ +  +    +L      +    +  
Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIQYLTVTELTKEVLDRSGYLEDLKIQNT 501

Query: 523 NEVI---DVLDEFLNFTLR----NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T       EQ +         +L     +    +       + +
Sbjct: 502 LEAQARIENLEEFLTVTQEFDEQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++ ++ T            +S   PE   +  +   
Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 687


>gi|326800328|ref|YP_004318147.1| UvrD/REP helicase [Sphingobacterium sp. 21]
 gi|326551092|gb|ADZ79477.1| UvrD/REP helicase [Sphingobacterium sp. 21]
          Length = 761

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 102/666 (15%), Positives = 208/666 (31%), Gaps = 118/666 (17%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 + N     +           +   Y +   K   +DF+DL+  TN LL +    
Sbjct: 150 ISAAEYQKNAQIQAEDQSGGRGNLGQIYQTYSQRCYKAGAMDFDDLLFKTNVLLNQHPE- 208

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             + YK   +  ++++DE QDT+  Q+ +++ L                +  VGD+ QSI
Sbjct: 209 --VLYKYQTKFKYLMVDEYQDTNFSQYLIVKRLAA----------INENICVVGDDAQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+F GA  + +L  ++              + +L  ++RST +I+   + + S  +N   
Sbjct: 257 YAFRGANIQNILNFEKDYP--------DLKVFKLEQNYRSTQNIVNAANSIISNNKNQLK 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +  S                           +++   + +   ++ D+           
Sbjct: 309 KNVFS---------------------------ENETGDKIKVVRAFSDNEEG-------- 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +A  I           +   + ++ KD  +L R    +  +    R L     I    
Sbjct: 334 KMVAENI---------LQDRSLQSLRFKDFAILYRTNAQSRAMEEALRKL----NIPYKI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                      IKDL+A  R   +  D+ +   ++  P     +  + +I        ++
Sbjct: 381 YGGTSFYQRKEIKDLIAYFRLTFNPNDEEALKRVINYPRRGIGDTSVERIFIAADQHQKS 440

Query: 466 VYEYIQKFANCGISKFQHVI----KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           ++E I         +   V+      I     +A+  S +D    I       +      
Sbjct: 441 IWEVITTPQQYLDGRTAAVVYPFGSLIQSFQVLAKNNSAYDTALHIAQHSGILKDLYEDK 500

Query: 522 GNE---VIDVLDEFLNFTLRNEQNS---YSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
             E     + + E LN      +        L   + ++           + N + V +M
Sbjct: 501 SVEGLNRYENIQELLNGIKEFSEREDIAEKGLDVFMQDIALLTNDD-NDKNPNADTVSLM 559

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H++KGLE P VF+V     +F  +                                  
Sbjct: 560 TIHSSKGLEFPQVFIVGLEENLFPSQLALNS----------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN---QRTWYDMVYDSFHND 692
                ++  EE  RL YV +TRA  +L +   ++       N      + D +   +   
Sbjct: 591 -----RTELEEERRLFYVAITRAEKKLTLSYATSRYRWGTLNNCEPSRFIDEIDPRYLAL 645

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           +        +S +     A    +         + +          +PK          +
Sbjct: 646 DFSAPTASKSSGDDVFGKARTAWSQPQSQDIFTKPKPKVVPKTTSILPKAHQPSAGFAPS 705

Query: 753 EPYILN 758
           +   L 
Sbjct: 706 DTSNLQ 711


>gi|325838896|ref|ZP_08166702.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1]
 gi|325490637|gb|EGC92948.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1]
          Length = 741

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 127/757 (16%), Positives = 221/757 (29%), Gaps = 145/757 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++ + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKAAREMKERVEKLIGDRGKDVWIST 87

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDL--------KEKLKKSQDEFIKIRDRFNTY 117
           F  +    L +        +   I   +  L        +  L   +       ++ +  
Sbjct: 88  FHSMCVRILRRDIDLIGYDLNFGILDDTDQLSVIKTVMEELNLDPKRQSPKYFLNQISNA 147

Query: 118 KMFKSTLASLT------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           K    T   L           +   Y++   KN  +DF+DL++ T  L +K      +  
Sbjct: 148 KNELKTPRDLRKEFENEDVIRVYEKYQQVLFKNNRVDFDDLLMLTVHLFEKEPE---VLA 204

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
               +  +I IDE QDT+  Q+ +++ L + F          R +  VGD  QSIYS+ G
Sbjct: 205 FYQNKFQYIHIDEYQDTNNAQYTIVKMLAKKF----------RNICVVGDSDQSIYSWRG 254

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L  +              +++ L  ++RS   IL   + V       +      
Sbjct: 255 ANIENILSFEHDYP--------DATVVLLEQNYRSKQMILNAANDVIKNNSGRRDKK--- 303

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                             LW         +       +    D   +       A  IA 
Sbjct: 304 ------------------LW-------SDRGVGDVIEYYRATDGDVE-------ATYIAD 331

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            IS M               +  +  VL R    +  I            I         
Sbjct: 332 KISYMHRDAH----------EYHEFAVLYRTNSQSRAIEQAL----LRQNIPYRLVGGQS 377

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-----TV 466
                 IKDLMA  R IL+ +DDLSF  ++  P        + K+     E+E     ++
Sbjct: 378 FFKRKEIKDLMAYLRLILNPDDDLSFARVVNEPKRGIGATSVDKLKVFAAESELSCMASI 437

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            +         ++K       I+ +       S  +   ++L      Q        E  
Sbjct: 438 QDATGVIPKATLNKMMDFKTMIYMMRMEMDTYSMVELIDMVLERTGYLQMLKDEKTIEAD 497

Query: 527 ---DVLDEFLNFTLRNEQNSYSS-------------------LQELISELEQYPPTIKRA 564
              D L+EF +     E+                        L  L+++L          
Sbjct: 498 SRIDNLEEFKSMAGHFEEQELDLILAEEESEERAEDLPTSVKLTILLNDLMLQTDVE-TE 556

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             +N ++V +MT+H AKGLE PVVFL      VF  +   +        +          
Sbjct: 557 EESNESKVTLMTIHAAKGLEFPVVFLCGFEDGVFPLRSAIEEGADELEEE---------- 606

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                                   RL YV +TRA D LII    +               
Sbjct: 607 -----------------------RRLAYVAITRAEDILIITNAQSRYQYGNRTANPESMF 643

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           + +          ++     +       E     P+ 
Sbjct: 644 IREISEEYLNKTGVQSRPRPSFSLSEVLEPKKEEPKR 680


>gi|260889954|ref|ZP_05901217.1| ATP-dependent DNA helicase PcrA [Leptotrichia hofstadii F0254]
 gi|260860560|gb|EEX75060.1| ATP-dependent DNA helicase PcrA [Leptotrichia hofstadii F0254]
          Length = 735

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 119/711 (16%), Positives = 230/711 (32%), Gaps = 140/711 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  + Y+    +    +S +N             + ++A  L        +   
Sbjct: 28  GAGSGKTRTVTYRIAHMVKEIGISPLNILALTFTNKAAREMKERATALIGHEANNLVVST 87

Query: 66  FSLLSSFFLTQKFTP--------------QKNIITQEINKKSPDLKEKLK--KSQDEFIK 109
           F   S   L                    QK+IIT+          + ++  K  +   K
Sbjct: 88  FHSFSVRLLKTYSERIGYGRNFNIYDVDDQKSIITKIKKDMGIKDNDNVQPGKLANRISK 147

Query: 110 IRDRFNTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
           ++++    K  +  +        L   +   Y+E  K N  +DF DL++N   LL     
Sbjct: 148 LKEQGIGIKELEREIDMRIPANRLFGEIYQKYDEVLKANNAMDFSDLLLNARKLLDD--- 204

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            A++  +I +   +I++DE QDT+ IQ+E+I  + E +          R +  VGDE QS
Sbjct: 205 -AFVLERIQERYQYIVVDEYQDTNDIQYEMINLIAEKY----------RNICVVGDEDQS 253

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY+F GA    +L  +R  ++           ++L  ++RST  IL   +++    ++++
Sbjct: 254 IYAFRGANINNILNFERDYKEAF--------TVKLERNYRSTKKILDTANELIKNNKSSK 305

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
           G +                     LW           + ++    +      +       
Sbjct: 306 GKT---------------------LW-------TDGSDGEKIKIYNAMTVYDE------- 330

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  I   +                    KD+ +L R    + ++            I   
Sbjct: 331 ADFIVTEMKKKKRDG----------ADYKDMTILYRTNAQSRVLEEKL----LSANIPYK 376

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464
                       IKD++A    + ++ D+ +F  ++  P  +  E  + KI      +  
Sbjct: 377 IYGGMQFFQRKEIKDILAYLSLLNNKNDNHNFYRIINVPKRSVGEKTLEKIQEVANEKNI 436

Query: 465 TVYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           ++ E +       +        +     +  +    +  S  + F  IL   +       
Sbjct: 437 SMLEALHYIDEIPVRAATKLALKEFYNLMQSIYSSLEEMSIKEIFDEILIRTRYIDSI-E 495

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
               + +  ++E LN     E+ + S SL E +  +     T       + N V++MT+H
Sbjct: 496 DNKEDRVRNIEELLNSITEIEKQNPSMSLNEYLDMISLSSATD--EMEDDENYVKLMTIH 553

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           ++KGLE   VFL      +F                                        
Sbjct: 554 SSKGLEFDYVFLAGMEDGLFPSISFDAPEEELEEERRL---------------------- 591

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKH-----SNTSNEKKSNQRTWYDM 684
                        YV +TRA  +L I            +  +   R  Y+M
Sbjct: 592 ------------CYVAITRAKKELFISYSSSRKIWGKDDNLRRPSRFIYEM 630


>gi|187250626|ref|YP_001875108.1| superfamily I DNA and RNA helicase [Elusimicrobium minutum Pei191]
 gi|186970786|gb|ACC97771.1| Superfamily I DNA and RNA helicase [Elusimicrobium minutum Pei191]
          Length = 786

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 138/802 (17%), Positives = 253/802 (31%), Gaps = 152/802 (18%)

Query: 32  NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL--------------LSSFFLTQK 77
                         + ++ + L      +     F                L+  F    
Sbjct: 55  RILAVTFTNKAAAQMRERVEALAPGQSGRVWIHTFHSFGVRLLRQNAHLLKLTKDFAIYD 114

Query: 78  FTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            + QK IIT        ++  K+       + +++D+ I             S +     
Sbjct: 115 ESEQKKIITLVLQEMGQKDAKKEINQYISLISRAKDDMID--PESFAISALASNIDFKIR 172

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+        LDF DL++ T +LLK  +    +R        HIL+DE QDT+
Sbjct: 173 AAEVYKRYQNKLNAAGALDFGDLLVKTAELLKNNED---VREYYQNIFQHILVDEYQDTN 229

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + R+L              R L  VGD  QSIYS+ GA  + +L  ++       
Sbjct: 230 HTQYIITRTLA----------YKHRNLCVVGDPDQSIYSWRGANIRNILEFEKDFP---- 275

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  II L  ++RST  IL   +K+    +  +  S  S  T             ++
Sbjct: 276 ----DAKIITLEQNYRSTQIILDSSNKLIKKNKKRKDKSLYSNKT---------SGEPIE 322

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           + E +    +                          AR  A  I+N+I            
Sbjct: 323 VRELLTEGEE--------------------------ARWTAQNIANLIEDG--------- 347

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                DI V  R    +       R     Y++           D   IKD++   R ++
Sbjct: 348 -ASLNDIAVFYRTNAQSRNFEDNFR----KYQLPYRLIGAVRFYDRREIKDILGYARVLV 402

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFAN------CGISKFQ 482
           +  D +S + +L +P     +    K +        ++Y+ +Q+ A             Q
Sbjct: 403 NPLDTVSLLRILNTPKRGIGKTAEEKFLEYANLHNISLYQALQRSAFVEGLTPTARRAAQ 462

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTL 537
             I  +  L    +  SP D    IL      +        +      +D L E +N   
Sbjct: 463 EFINLMDTLRLELKVTSPTDIVNKILTLSGYWKAVEDEVEKDLEAGARLDNLQELVNAVK 522

Query: 538 RNEQ-----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             E+        +SL + + E+       ++   ++   V +MTVH AKGLE PVVF+  
Sbjct: 523 EYEERMARTEREASLSDFVQEISLITGADEKQ-DSSAGAVTLMTVHLAKGLEFPVVFVSG 581

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F                                     +        EE  RL Y
Sbjct: 582 LEEGLFP------------------------------------LSSKDDDDLEEERRLCY 605

Query: 653 VGMTRASDQLIICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           V MTRA D+L +   S      +  +N  + +         ++     + +  +      
Sbjct: 606 VAMTRAKDRLFMTYTSTRRIFGKMYTNLPSRFLFESGLITEEQEGPLNRQSTVMPNYGGY 665

Query: 711 AYEWSTHHPENTPLER-EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
             ++ + + E       +        ++K  +  +   + + +    +  + +   G+  
Sbjct: 666 KTKYGSKYGETQNRPSFKPFFAAPKKQKKYDEHGYEIEEQEGDYGAPIGCAPLGIAGENE 725

Query: 770 LESLLSDNQTFNRGLII-HKLL 790
             ++    Q    G  + H + 
Sbjct: 726 APAVHVSAQGPRTGQRVRHGVF 747


>gi|254832504|ref|ZP_05237159.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes 10403S]
          Length = 733

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 186/567 (32%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 417

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537

Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K           V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650


>gi|300775551|ref|ZP_07085412.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC 35910]
 gi|300505578|gb|EFK36715.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC 35910]
          Length = 776

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 105/672 (15%), Positives = 199/672 (29%), Gaps = 124/672 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y E   +N  +DF+DL++ TN+LL +      +  K      +I++DE QD
Sbjct: 172 KFIGQIYQRYVEQCFRNGSMDFDDLLLKTNELLTRFPE---VLAKYQDRFRYIMVDEYQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++++L   F            +  VGD+ QSIYSF GA    +L  K+     
Sbjct: 229 TNHSQYLIVKALASKFE----------NICVVGDDAQSIYSFRGANIYNILNFKKDYP-- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RST +I+   + V +        +  S                
Sbjct: 277 ------DAKTVSLEQNYRSTQNIVNAANVVIAKNLQQFKKNVFS---------------- 314

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                      D++   + + + S  D+          A  +A  I  +   D       
Sbjct: 315 -----------DNEEGDKIKIYRSLSDADE--------ANFVAGNIWELRNRDQR----- 350

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    T       R       I               +KDL+   R 
Sbjct: 351 ----KYSDFAILYRTNSQTRAFEDALR----RKNIPYKVYGGLSFYQRKEVKDLIGYLRL 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----------ETETVYEYIQKFANCG 477
           ++++ D  + + ++  P     E    K+               +   +Y       N  
Sbjct: 403 LINENDSEALMRIINYPARGIGETTQNKLIVFADAHNIAVSKVLDNLPMYAPQLGLNNGV 462

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
           ++K       I     + +  + +     +       +        E    ++ + E +N
Sbjct: 463 LNKLNDFWSMIKAFQVLLKTETAYSVAMEVAKRSGLIKFLKDDQTPEGISRVENVQELMN 522

Query: 535 FTLRNEQN------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                 +          SL   +  +     T  +      + V +MT+H +KGLE PVV
Sbjct: 523 SMQGFIEEQMQLEDGDPSLSNFLENIALSADTQDKELE--DDMVSLMTIHLSKGLEFPVV 580

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            LV     +F                                     +    +   EE  
Sbjct: 581 HLVGLEENLFPS----------------------------------FMSSATREDLEEER 606

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           RL YV +TRA  Q       +     K         + +            +      + 
Sbjct: 607 RLFYVALTRAEKQAFFSYAVSRFQWGKITDAEPSRFLSEIDDEYIEFLNPAMEKRFINNS 666

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
            +       HP      ++   K +   +             ++   I+NPS   ++   
Sbjct: 667 GVKSNIFDEHPSEMRSFKKVEKKTIDRGETSKPAPEVRKLKPVSTAKIINPSGASSQDIE 726

Query: 769 NLESLLSDNQTF 780
             + +  D    
Sbjct: 727 VGDKVRHDRFGI 738


>gi|108801294|ref|YP_641491.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS]
 gi|119870445|ref|YP_940397.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS]
 gi|108771713|gb|ABG10435.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS]
 gi|119696534|gb|ABL93607.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS]
          Length = 785

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 105/635 (16%), Positives = 192/635 (30%), Gaps = 127/635 (20%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   + A Y+   +    LDF+DLI  T  +L++      I     +   HIL+DE 
Sbjct: 184 LARIIADVYAEYQRRLRAANALDFDDLIGETVAVLQRFP---QIAQYYRRRFRHILVDEY 240

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+ ++R L            +P  L  VGD  QSIY+F GA  + +   +R   
Sbjct: 241 QDTNHAQYVLVRELVGGG-AHDTGEVAPAELCVVGDADQSIYAFRGATIRNIEDFERDYP 299

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                     + I L  ++RST  IL   + V +     +                    
Sbjct: 300 N--------ATTILLEQNYRSTQTILNAANSVIARNAGRREKR----------------- 334

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW           + +        +   +       AR +A  I  +         
Sbjct: 335 ----LW-------TDSGHGELIVGYVADNEHDE-------ARFVAQEIDRLADDGH---- 372

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D  V  R   ++  +  +         I           +   I+D++A  
Sbjct: 373 ------SYNDFAVFYRTNNNSRALEEVF----IRAGIPYKVVGGVRFYERREIRDIVAYL 422

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF--- 481
           R + +  D +S   +L +P     +     +     +   +  + +Q  A   +      
Sbjct: 423 RVLDNPGDSVSMRRILNTPRRGIGDRAEACVAVYAENTGASFNDALQAAAEGKVPMLNTR 482

Query: 482 -----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
                   ++ + +L          +    +L     R +  +    +    +D L+E +
Sbjct: 483 SEKCIASFVQMLDDLRGRLGDE-LGELVEAVLDRTGYRAELEASNDPQDLARLDNLNELV 541

Query: 534 NFTLRN--EQNSYSSLQE---------------LISELEQYPPTIKRAHSANHNE--VRI 574
           +       ++ + ++L E               L   LE+            H    V +
Sbjct: 542 SVAHEFSIDRANAAALAEDLDEPVDEDIPDTGVLAQFLERVSLVADADDIPEHGSGVVTM 601

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+HTAKGLE PVVF+      +F H                                  
Sbjct: 602 MTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDP--------------------------- 634

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                  +   E  RL YVG+TRA  +L + +    S+  +         + +       
Sbjct: 635 -------NELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELID 687

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
            ++    N        +   S     +    R   
Sbjct: 688 WRRTDPENRRPSFSAPSRMSSGSSGTSFGAPRPSP 722


>gi|152968347|ref|YP_001364131.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151362864|gb|ABS05867.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 1123

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 137/923 (14%), Positives = 279/923 (30%), Gaps = 99/923 (10%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            Q  S      +  +LL    L+     +       ++K   ++ + L  +Q     +R  
Sbjct: 244  QAVSAATDRWDVLALLGDVKLSSSGGRKPAWQQAGLDKA--EVVDALAHAQRAVEDLRSA 301

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                     T     +  +L A   + +++   L F DL++   DLL++      +R ++
Sbjct: 302  VGAATTKTLTA---RVQDWLLAE-ADRRRELGALSFHDLLVLARDLLRRN---RDVRERL 354

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRTLFAVGDEKQSIYS 228
              +   +LIDE QDT  +Q E+   L  D         +    +P  LF VGD KQSIY 
Sbjct: 355  HAQWPVLLIDEFQDTDPLQVEIACLLAGDCGEEPPEQWQEIPVAPGRLFFVGDAKQSIYR 414

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F GA+         ++++             L ++FRS   +L   +  F     A    
Sbjct: 415  FRGADVATFTAVGDLHERG---------RTGLAVNFRSVPGVLEAANHAFRTLIGAD--P 463

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                       +R G    V +   ++                              A  
Sbjct: 464  AAGIAYADLHPARDGGADGVDVPVLLLGGDRDVPAGALRDL---------------EAEH 508

Query: 349  IAYTISNMIGTDTIFS----------NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            +A  I+                       +R  Q +D+ VL+  R     I         
Sbjct: 509  VADVIARAKAEGWPVEASTRHPDGTSTRGQRPAQYRDVTVLLPTRTPLASIERALE---- 564

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
               I      R ++    A++ ++AL + + S  D ++ +  L+ P    +  D+  +  
Sbjct: 565  GRDIPYRVESRSLVWSTDAVRAVLALLQAVDSPADQVALLAALRQP--GLACSDVDLVGW 622

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            +                         ++ +        +   +     ++   +  +   
Sbjct: 623  RAAGGRWSIHAAVPEGIDEQHPVAAALRTLRRWHEQRWWVPVNQLVEEVVRELRLVELTA 682

Query: 519  -SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEV 572
              R   +    L   ++          S L   +S       +            + + V
Sbjct: 683  SQRRPRDHWRRLRFVVDQAREWCDRGGSGLTGFLSWTVRQQQDSADLVETVVPEPDDDAV 742

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            RI+TVH +KGLE PV  +            +      P +     +              
Sbjct: 743  RILTVHGSKGLEFPVTVVAGLNGSGRDDATVLWAPDGPLVRFRADVLEMPG--------W 794

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS---- 688
                +  K  +++E  RLLYV +TRA D L++  +   S    S  +  ++++ DS    
Sbjct: 795  RQASQDEKAESEQEAIRLLYVALTRAQDHLVVGCYHKPSRTGGSRAQKLWELLADSGLAR 854

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
              ++ R ++     +      +              +R E ++Q            +   
Sbjct: 855  CESEPRAQRAAQGTAPATPFQVLVPEDEGRTARDLPDRAEFLEQRAALLAALHAAVATSA 914

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQT-----------------FNRGLIIHKLLQ 791
              + +   +  S    + +   E    D                       G  +H++L+
Sbjct: 915  TAVRQATAVPTSGPSREEEPAKEHDAPDTTAGDEAGVRPPRRTTRRRGAAVGTAVHRVLE 974

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVS 850
             +  L    R+          A          +       L  P++  A     ++ EV 
Sbjct: 975  -LADLRSPSREEVRRLAEAVCAAEQVPDSTGEVEQRAWSALTAPVVRDAADGGRTWREVY 1033

Query: 851  VSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHH-VPQEIEHIPYTHIAQLSIYE 908
            +            + G +D ++ +    + + +YKT       ++      +  QL  Y 
Sbjct: 1034 LVV----DDGQRYLEGYVDLLAETSTGELVVVDYKTDRVRSAADVAAKEQHYAGQLDAYA 1089

Query: 909  KILKDSYPNKSLVCLLIYVSEPK 931
              L      +     L++    +
Sbjct: 1090 DALARVLGRRPDDTRLVFAQPGE 1112


>gi|304385365|ref|ZP_07367710.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM
           20284]
 gi|304328572|gb|EFL95793.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM
           20284]
          Length = 760

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 118/700 (16%), Positives = 214/700 (30%), Gaps = 145/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L     ++     
Sbjct: 33  GAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTNKAAREMRERVANLLGEVASEIWVST 92

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L +        +     + +++   +K  L     +      R    K+  +
Sbjct: 93  FHALCVRILRRDIEQIGYNRAFSIADPSEQRTLIKHVLADLNYDPKVYDPRSVLGKISNA 152

Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               +                   +   Y+   K N  LDF+DLI+ T  L ++   +  
Sbjct: 153 KNDLMTPADYQENASNPHDEAVGKIYDEYQRRLKANQALDFDDLIMQTIRLFEQSPET-- 210

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q++++  L + F          R L  VGD  QSIY 
Sbjct: 211 -LQFYQNKFHYIHVDEYQDTNQAQYQLVTMLAKGF----------RNLCVVGDSDQSIYG 259

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +                + L  ++RST +IL   + V +     +   
Sbjct: 260 WRGADMQNILNFESDYP--------DAHTVMLEQNYRSTQNILNAANDVIANNVERKPK- 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               QLW              + S+        +          
Sbjct: 311 --------------------QLW-------TDNAEGAKISYYRGQTGNDEVH-------F 336

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   I                 D  +L R    + LI            I      
Sbjct: 337 IVQQIRKQIEE---------NNFDYGDFAILYRTNAQSRLIEDTF----VKANIPYTMVG 383

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   I+D+++    I ++ED +SF  ++  P        + K+       + ++ 
Sbjct: 384 GHKFYDRKEIRDVLSYLTLIANEEDSMSFERVINEPKRGIGATSMAKLQAFADENSWSLL 443

Query: 468 EYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           +  +        A    +  +   K I  L   A+F S  +    +L     R       
Sbjct: 444 QAARNVQIANGIARRTRNAIEDFAKTIDALRKSAEFLSITELTETLLDKTGYRAALEQTR 503

Query: 522 GNEVI---DVLDEFLNFTLRNEQNSYSS-------------LQELISELEQYPPTIKRAH 565
             E     + ++EFL  T + ++ + +              L + +++L           
Sbjct: 504 TMEAEARLENINEFLTVTKQFDEQNDAEGTEVADENGDNVRLVDFLADLALVSDQD--DV 561

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               + V +MT+H AKGLE PVVFLV     VF                           
Sbjct: 562 EEEPSAVTLMTLHAAKGLEFPVVFLVGMEEGVFPLS------------------------ 597

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                              EE  RL YVG+TRA  +L + 
Sbjct: 598 ----------RAATDPDELEEERRLAYVGITRAQKKLYLT 627


>gi|229823253|ref|ZP_04449322.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC 51271]
 gi|229787419|gb|EEP23533.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC 51271]
          Length = 798

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 117/738 (15%), Positives = 221/738 (29%), Gaps = 149/738 (20%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
             G    ++  L ++  + +   QV+  N             + ++ Q L     +    
Sbjct: 34  AAGAGSGKTRVLTHRIAYLIQERQVNPWNILAITFTNKAAAEMRERVQRLVGEEASSIWV 93

Query: 64  ERFSLLSSFFLTQKFT--------------PQKNIITQEINKKSPDLKEK-LKKSQDEFI 108
             F  + +  L ++                 Q+ ++ Q +   + D  +   K       
Sbjct: 94  ATFHAMCARILRREIETLGYAKNFTIIDQGEQQTLMKQVLRDLNLDSDQYNYKDLLWVID 153

Query: 109 KIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             +++      F ++ +     +   +  +Y++  K    LDF DLI+ T  LL++    
Sbjct: 154 AAKNQGYLPDDFLASDSGYIHEIHANIYRNYQKRLKAANALDFNDLILLTVRLLEQNPT- 212

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             IR    Q+  +I +DE QDT+  Q+ +++ L              + +  VGD  QSI
Sbjct: 213 --IRQFYQQKFQYIHVDEYQDTNHSQYRLVQLLAGLL----------KNICVVGDADQSI 260

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA    +L  ++   +          +I L  ++RST  IL   + V       + 
Sbjct: 261 YGWRGANMANILNFEQDYPQ--------AKVILLEQNYRSTQTILKAANSVIENNLQRKD 312

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                 QLW       D Q   + + +++  D           A
Sbjct: 313 K---------------------QLWS------DGQVGEKIQIYSADSDLEE--------A 337

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +  TI ++   +               + VL R +  +  +            +    
Sbjct: 338 DFVTRTIRHLRDQE---------GANYSQVAVLYRTQAQSRGLEEAL----LRSNMPYKV 384

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TET 465
                      I+D +A  R + +  D+LS   ++  P        + K+         +
Sbjct: 385 VGGLKFYARKEIQDTLAYLRLLDNPHDNLSLNRIINVPKRGIGATTVTKLAEFADSLGVS 444

Query: 466 VYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            +E I +            K       I  L     F    D    +       +     
Sbjct: 445 WFEAIGRLHFSNFSASVQKKLLDFAHLIETLRQQVPFLPLRDLTEEVWDKTGYLKSLKEE 504

Query: 521 FGNEVI---DVLDEFLNFTLRNEQNS-YSSLQELISELEQYP------------------ 558
              E     + L+EF +   + +Q    + L++    L Q                    
Sbjct: 505 GTVEAANRLENLEEFASVVTQFDQTEREAILEQDPDYLAQTQGQEEVALAPLTQFLTDVS 564

Query: 559 -PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
             T         ++V +MT+H AKGLE P VF+V     +F  +                
Sbjct: 565 LMTDADNQEEALDQVTLMTLHAAKGLEFPYVFMVGMEEGLFPLR---------------- 608

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                                      EE  RL YVGMTRA   L +          ++ 
Sbjct: 609 ------------------RASENPDELEEERRLAYVGMTRAERALYLTASKRRLQYGRTV 650

Query: 678 QRTWYDMVYDSFHNDERV 695
                  + +   +    
Sbjct: 651 TNPPSRFLDEIQPDLVEW 668


>gi|121607642|ref|YP_995449.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121552282|gb|ABM56431.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 1140

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 140/934 (14%), Positives = 290/934 (31%), Gaps = 72/934 (7%)

Query: 24   PYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKN 83
                               N T  K AQ + +A  +         L              
Sbjct: 257  ADACRQRWLARAKALGAESNKTPQKAAQAIIEAFASTDANLCLDRLRQALF--------- 307

Query: 84   IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
            + T +   K+ +     +++  E  ++ D    +  ++   +   L + L+A +   K +
Sbjct: 308  VATADRLAKNLEKFAAAQEAAPELRRLLDARRQHAAWQHQQSMARLTRCLSAQFAAVKNQ 367

Query: 144  NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
            +  +D  D+  +   +L    +S W++ ++D  I H+L+DE QDT+ +QW+ + +    +
Sbjct: 368  HGWVDMNDVERSAQRMLADPVLSGWVQQRLDARIRHLLVDEFQDTNPLQWQALHAWLSGY 427

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                    +  ++F VGD KQSIY F  AEP+  +  +          G    ++    +
Sbjct: 428  AGAG-GGGAAPSVFIVGDPKQSIYRFRRAEPQVFMAAQT-----FVRNGLGGDLLSCDHT 481

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-SQC 322
             R+   +   V++V    +  Q +S          S+     G V     ++        
Sbjct: 482  RRNATGVTAAVNQVMGQAQAQQEISGFRAH-----STESQDPGAVLRLPAILPAPARDGA 536

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
            +    +W         E   +         +          +           +LVL RK
Sbjct: 537  DADPLAWRDSLTEPRHEPEETR-------RMRECAQAAAWVAAQIAAGTPPGQVLVLARK 589

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
            R     +    R L     +  V  ++  L D   ++DL+AL   ++S   DLS    LK
Sbjct: 590  RDRLSAMQDALRAL----HLPCVQPEKADLFDAPEVQDLVALLDALVSTGHDLSLARALK 645

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK---YIHELIHIAQFCS 499
            SPLF   ++ +  +   R E         +           ++     + +         
Sbjct: 646  SPLFGLGDEALAALARLRREPGHAASSWYELLQKRELLTGDLLAPGPVLAQYKAWVDAWP 705

Query: 500  PHDFFTLILGAKKGR----QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
            PHD    I               +     V   L   L+  L+ +   Y +    +  L+
Sbjct: 706  PHDALHAIYQHADVLARFAAAAPAAQRQAVQAQLRALLSAALQYDGGRYLTPYAFVRALK 765

Query: 556  QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +          A    +R++TVH AKGLE+  V L+DT ++    + +  +   P     
Sbjct: 766  KGGLRAPGRVDAQ--AIRLLTVHGAKGLEAHCVLLLDTDTRPPKAETMGVLLDWPGERVV 823

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            P   I++             +   +++ Q E   LLYV MTRA   L +       +   
Sbjct: 824  PASFIFLASETHPPPSAEAALAAEQQARQREELNLLYVAMTRARHSLALSSVQPAHDAPG 883

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
            S  +    +                  S +     +         +      E       
Sbjct: 884  SWWQRLEPLAAPVQMPAPGEPTTASAASTSPSSPSSPTPPAAGDTHEHFTLAELPPPSAY 943

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV--- 792
                         +    P     +  +                   G  +H+LL+    
Sbjct: 944  LSTPLPAHLPDHLSTPLRPAPQGHAPENHGTDPGTP-------ATRLGEAMHQLLEQAGV 996

Query: 793  ----IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
                +  L          +   ++  +  + +   L     + +       A        
Sbjct: 997  AGAPLAELRAQGWPAARLARLAQDFDI--SMDAAWLAAQTAQRILTGAGAWAWDATVVDH 1054

Query: 849  VSVSGKINCPKKDIIISGRIDQISI-----SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
             S    +    + + +    D++        +   ++ +YK+     ++   +      Q
Sbjct: 1055 ASNEALLRDQGQSLRL----DRLVHCRHPAERAGWWVLDYKSAAAPERQPALLA-----Q 1105

Query: 904  LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
            L  Y   ++   P + +    +   + ++ ++P 
Sbjct: 1106 LQRYRAAVQRQTPGERVHAAFL-SGDGRMVLLPD 1138


>gi|227832630|ref|YP_002834337.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453646|gb|ACP32399.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 852

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 112/774 (14%), Positives = 222/774 (28%), Gaps = 161/774 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+                + ++   L      +     
Sbjct: 78  GAGSGKTAVLTRRIAYLMRERGVAPWQILAITFTNKAAAEMKERVGQLVGPVAERMWVST 137

Query: 66  FSL---------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQ--D 105
           F                 L++ F        + ++T   +++         ++  +Q  +
Sbjct: 138 FHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLLTMIAKDMQLDLKKYSARVLANQISN 197

Query: 106 EFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
              ++          + T     +    +   Y+   +    +DF+DLI     +  +  
Sbjct: 198 RKNELISPEQARAEAERTKNPFEITVASVYEEYQRRLRAANSVDFDDLIGEVVRIFNQHP 257

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +   H+LIDE QDT+  Q+ ++ +L                L  VGD  Q
Sbjct: 258 ---QVVEFYRRRFKHVLIDEYQDTNHAQYALVSALVGR----GELPPDAPELCVVGDSDQ 310

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY+F GA  + +   +R   +           I L  ++RST  IL   + V +  E  
Sbjct: 311 SIYAFRGATIRNIQEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNEGR 362

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  +                     LW        +    +Q       +   +      
Sbjct: 363 REKN---------------------LW-------TAHGQGEQIVGYVADNEHDE------ 388

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR IA  I ++    T             DI V+ R    +  +  +         I  
Sbjct: 389 -ARYIASEIDSLADKGTA----------YSDIAVMYRTNNASRALEDIF----VRSGIPY 433

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                    +   I+DL+A  R + + +D +S   ++  P     +    +I        
Sbjct: 434 KVVGGTRFYERREIRDLVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLG 493

Query: 465 TVYEYIQK---------FANCGISKFQHVIKYIHELIHIAQFC--------SPHDFFTLI 507
             +    +              ++      + +  +                  +    +
Sbjct: 494 VSFGAALRDAAAGKVAGLGTRAVNAVSKFNEMMEGVRAQIPGMVNEVTGQPDLGELLNAL 553

Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-------------EQNSYSSLQE-- 549
           L A   R +  +    +    +D L+E ++                  +      L E  
Sbjct: 554 LDATGYRAELENSNDPQDGARLDNLNELVSVAREFSSEAANEMAFLGADAEEAPELSEGE 613

Query: 550 -----LISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                L + LE+           +H    V +MT+HTAKGLE PVVFL       F H  
Sbjct: 614 AAPGSLQAFLEKVSLVADADQIPDHESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMR 673

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                      E  RL YVG+TRA +QL
Sbjct: 674 SLGDP----------------------------------KELSEERRLAYVGITRAREQL 699

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            + +    S+            + +   +    ++ +  +S++        +  
Sbjct: 700 YLTRAILRSSWGNPVTNPASRFLAEVPEDLIDWRREEPDSSLSSAWGGDDSYQY 753


>gi|83590844|ref|YP_430853.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073]
 gi|83573758|gb|ABC20310.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073]
          Length = 729

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 113/613 (18%), Positives = 191/613 (31%), Gaps = 115/613 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+E  ++   +DF+DLI+ T  L ++  +   +     Q   HIL+DE QDT+  
Sbjct: 173 QIYRRYQEKLRELNAMDFDDLIMQTVFLWQQNPL---VLRYYQQRWQHILVDEYQDTNHA 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ ++R L                L  VGD  Q IY + GA+   +L  +    +     
Sbjct: 230 QYILVRLLAG----------KGDNLCVVGDPDQGIYGWRGADIGNILAFEEDFPR----- 274

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL   + V    E  +                        LW
Sbjct: 275 ---ARVILLEENYRSTRPILQAANAVIQHNEGRREKR---------------------LW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +   +        D   +        R IA  +      +           
Sbjct: 311 -------TRRREGELLHLYRATDERDEG-------RFIAGEVYRRHQQEGRP-------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  VL R    +  +            +               IKD++A  R I + 
Sbjct: 349 -FSDFAVLYRTHAQSRALEEAF----IQAGVPYEIVGGLKFYQRKEIKDILAYLRVIANP 403

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVY------EYIQKFANCGISKFQHV 484
           +D LS + ++  P     E  + ++      E E++Y      + I      G    + +
Sbjct: 404 DDSLSLLRIINVPRRGIGEATLARLEAAATSEGESLYRVLERVDTIPGIPARGRQALREL 463

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
           ++ +  L    +  +  D    IL     + +  +    E     + L EF   T   +Q
Sbjct: 464 VEMLDNLRQQQEKITVTDLVATILQETGYQAELEAERTPEAQARLENLKEFQTVTRSYDQ 523

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            +  S   L   L Q     +    + +  V +MT+HTAKGLE PVVFL      VF H 
Sbjct: 524 GAPES--SLGDFLTQVALVAESDTYSGNAAVALMTMHTAKGLEFPVVFLAGLEEGVFPH- 580

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                   +  EE  RL YVGMTRA + 
Sbjct: 581 ---------------------------------FRSLDDPAEMEEERRLCYVGMTRAREV 607

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +      +    +        + +   +  + +   L + +        +        
Sbjct: 608 LYLTHAWTRNLYGSTMSNPPSRFLDEIPADLIQGEGTGLRSGVLSRTSEERDDRGRSTRR 667

Query: 722 TPLEREETIKQLM 734
            P     T     
Sbjct: 668 QPAPARSTRASWQ 680


>gi|226224362|ref|YP_002758469.1| ATP-dependent DNA helicase [Listeria monocytogenes Clip81459]
 gi|225876824|emb|CAS05533.1| ATP-dependent DNA helicase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 731

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 185 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 241

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 242 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 283

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 284 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 315

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 316 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 359

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 360 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 415

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 416 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 475

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 476 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 535

Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K    +   +  V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 536 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 585

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 586 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 621

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 622 LYGRPSSNQESRFIGEIPRDLLELGNE 648


>gi|293376176|ref|ZP_06622421.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909]
 gi|292645163|gb|EFF63228.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909]
          Length = 741

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 125/757 (16%), Positives = 221/757 (29%), Gaps = 145/757 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++ + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKAAREMKERVEKLIGDRGKDVWIST 87

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDL--------KEKLKKSQDEFIKIRDRFNTY 117
           F  +    L +        +   I   +  L        +  L   +       ++ +  
Sbjct: 88  FHSMCVRILRRDIDLIGYDLNFGILDDTDQLSVIKTVMEELNLDPKRQSPKYFLNQISNA 147

Query: 118 KMFKSTLASLT------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           K    T   L           +   Y++   KN  +DF+DL++ T  L ++      +  
Sbjct: 148 KNELKTPRDLRKEFENEDVIRVYEKYQQVLFKNNRVDFDDLLMLTVHLFEREPE---VLA 204

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
               +  +I IDE QDT+  Q+ +++ L + F          R +  VGD  QSIYS+ G
Sbjct: 205 FYQNKFQYIHIDEYQDTNNAQYTIVKMLAKKF----------RNICVVGDSDQSIYSWRG 254

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L  +              +++ L  ++RS   IL   + V       +      
Sbjct: 255 ANIENILSFEHDYP--------DATVVLLEQNYRSKQMILNAANDVIKNNSGRRDKK--- 303

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                             LW         +       +    D   +       A  +A 
Sbjct: 304 ------------------LW-------SDRGVGDVIEYYRATDGDVE-------ATYVAD 331

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            IS M               +  +  VL R    +  I            I         
Sbjct: 332 KISYMHRDAH----------EYHEFAVLYRTNSQSRAIEQAL----LRQNIPYRLVGGQS 377

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-----TV 466
                 IKDLMA  R IL+ +DDLSF  ++  P        + K+     E+E     ++
Sbjct: 378 FFKRKEIKDLMAYLRLILNPDDDLSFARVVNEPKRGIGATSVDKLKVFAAESELSCMASI 437

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            +         ++K       I+ +       S  +   ++L      Q        E  
Sbjct: 438 QDATGVIPKATLNKMMDFKTMIYMMRMEMDTYSMVELIDMVLERTGYLQMLKDEKTIEAD 497

Query: 527 ---DVLDEFLNFTLRNEQNSYSS-------------------LQELISELEQYPPTIKRA 564
              D L+EF +     E+                        L  L+++L          
Sbjct: 498 SRIDNLEEFKSMAGHFEEQELDLILAEEESEERAEDLPTSVKLTILLNDLMLQTDVE-TE 556

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             +N ++V +MT+H AKGLE PVVFL      VF  +   +        +          
Sbjct: 557 EESNESKVTLMTIHAAKGLEFPVVFLCGFEDGVFPLRSAIEEGADELEEE---------- 606

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                                   RL YV +TRA D LII    +               
Sbjct: 607 -----------------------RRLAYVAITRAEDILIITNAQSRYQYGNRTANPESMF 643

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           + +          ++     +       E     P+ 
Sbjct: 644 IREISEEYLNKTGVQSRPRPSFSLSEVLEPKKEEPKR 680


>gi|256785725|ref|ZP_05524156.1| ATP-dependent DNA helicase II [Streptomyces lividans TK24]
 gi|289769617|ref|ZP_06528995.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24]
 gi|289699816|gb|EFD67245.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24]
          Length = 831

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 120/728 (16%), Positives = 226/728 (31%), Gaps = 134/728 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 183

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + K  +LK +L   +D              F+ T   
Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEED------FAAQAADGFEKT--- 233

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 234 ---LAQAYAMYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287

Query: 187 DTSLIQWEVIRSLTEDFFVG-----KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           DT+  Q+ ++R L                  P  L  VGD  QSIY+F GA  + +L+ +
Sbjct: 288 DTNHAQYALVRELVGVPSEHPVDVPPEAEVPPAELCVVGDADQSIYAFRGATIRNILQFE 347

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         + I L  ++RST  IL+  + V    E+ +  +             
Sbjct: 348 EDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------- 386

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW        +Q +  Q +         +       A+ +A  I  +     
Sbjct: 387 --------LW-------TNQGSGAQITGYVADTEHDE-------AQFVADEIDRLTDAGE 424

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                     +A D+ V  R    + +   +         +           +   ++D+
Sbjct: 425 ---------AKAGDVAVFYRTNAQSRVFEEVF----IRTGLPYKVVGGVRFYERKEVRDV 471

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480
           +A  R + + ED +    +L  P     +     I    + E  +  + +++        
Sbjct: 472 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALSQREKISFPQALRRVDEAYGMA 531

Query: 481 FQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
            +           + +L  I +  + P      IL       +  +    +    I+ L 
Sbjct: 532 ARSANAVKRFNTLMEDLRTIVESGAGPATVLEAILERTGYLAELQASTDPQDETRIENLQ 591

Query: 531 EFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLE 584
           E     L  EQ          L + + ++     + +     + +  V +MT+HTAKGLE
Sbjct: 592 ELAAVALEFEQERAEGEEAGTLADFLEKVALVADSDQIPDEEDGDGVVTLMTLHTAKGLE 651

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVVFL      VF H                                       +    
Sbjct: 652 FPVVFLTGMEDGVFPHMRALG----------------------------------QAKEL 677

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           EE  RL YVG+TRA ++L + + +  S   + +       + +        K+       
Sbjct: 678 EEERRLAYVGITRARERLYLTRSTLRSAWGQPSYNPPSRFLEEIPAPHLEWKRTGANGPA 737

Query: 705 NKDEWIAY 712
                   
Sbjct: 738 PSAPVSGV 745


>gi|329767683|ref|ZP_08259202.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341]
 gi|328839033|gb|EGF88621.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341]
          Length = 1212

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 144/899 (16%), Positives = 301/899 (33%), Gaps = 118/899 (13%)

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKI 173
            KM + +     + K L+  + + K++N  LDF DL       L K +    + +      
Sbjct: 350  KMSELSRTITKVLKNLHNDFIKRKRENNFLDFSDLNHLAIKALTKEENGEIIPSEAANYY 409

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             +    I +DE QD + +Q  ++  +                 F VGD KQ+IY F G+ 
Sbjct: 410  REYFYEIYVDEYQDNNNLQEYILNLI----------RGEGVNFFRVGDVKQAIYGFRGSN 459

Query: 234  PKRVLREKRINQKRATNA-----------GQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            P    ++    +K   +              +   + L  +FRS  +IL   + VF+   
Sbjct: 460  PDLFEQKYNSYRKLEIDNYSVNEEYSFEDDSEGICVVLKENFRSDENILKSSNFVFNRLM 519

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              +                  +    ++          +    + ++ +      +++  
Sbjct: 520  GNKNAGVSYDEDSALYYPEAKERQDTEIMPT-------KLINGKVNYYTGEIVENKKNYR 572

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                  IAY I   I              +  D  VLVR          +     + Y I
Sbjct: 573  EQSIENIAYEILQGIKNGK----------KYSDYAVLVRNSTKMSSFKEIF----SKYNI 618

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
             +   ++   T+      L  + RF+ +   D S + +L + +F++S D++ ++  Q+ +
Sbjct: 619  PLFFKEKVGFTESNCFNILYNILRFLDNTNRDASLLAILHTEIFDYSNDELLRVSLQKGK 678

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF- 521
                    +K  N    K       + + ++ +   S       I      +   ++   
Sbjct: 679  NL-----FEKLTNSENKKDSQTTNLLKKWLNFSLNNSLPTLIECISLDTDFKNYLVTIGV 733

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHT 579
             +E ID  + F++     ++     L  LI +L+               ++ V + T+H 
Sbjct: 734  NDEEIDYFENFVDVVNEYQKIDNK-LSGLIRQLKNIKNEEVFETKKRTPNDSVTLSTIHI 792

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN-------DDPGIPIWIPQSKSRNNIV 632
            +KGLE   VF+ D  +      +  +     +               +   +    N + 
Sbjct: 793  SKGLEYKEVFVADLDTSFSKSGYTGEGLFTETFGLSLNVETIAQNFGLNNSRLTELNELY 852

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-NEKKSNQRTWYDMVYDSFHN 691
                  +K   +EE  R LYV +TRA + L +   S    N +K+  ++    + +  + 
Sbjct: 853  KLNSILIKLREREEEIRNLYVALTRAKNTLYLVSPSGIELNNEKARDKSLSQAILEDDNF 912

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            +  +  +              E      E  PL +E+      D     ++     +++ 
Sbjct: 913  ETILNNLLSDYEEGFSFENEREAKFEAHEVIPLIQEQENGLDFDLADFYERFELKQQDNE 972

Query: 752  NE----------PYILNPSTIDTKGKTNLESLLSDNQ----------------TFNRGLI 785
                        P   + S +      +      + +                   RG I
Sbjct: 973  EIQENTIKHKVFPTKTSYSALKKINGESNSGFKKEKRGYLELTTLKSSTSTSKAILRGNI 1032

Query: 786  IHKLLQVIFTLPEHKRK-NFITSYCT------------KNAKLWPAKEYKNL-----LLS 827
            +HKL + I        + N +  Y              K  ++   +E+ N+     +  
Sbjct: 1033 VHKLFEKIVNDVRSGVEINDVEVYLNNLKKTDSLIKNIKENRILTEEEFDNINNKDDIER 1092

Query: 828  ITRLLENPMMTTAMSCD-SYSEVSVS-----GKINCPKK---DIIISGRIDQIS-ISQQN 877
            I+  + N +M    +C    +E++ +      ++        D+I+ G +D    IS   
Sbjct: 1093 ISNFINNELMNIISNCQFCQTEIAFTTAKKAKELYSESDSEIDVILQGVVDLFIKISDDE 1152

Query: 878  IFIFEYKTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              I +YKT +   +  E  +   H  QL IY++ + + Y  K++   +      K+  +
Sbjct: 1153 AIIVDYKTDYVTSKTGEDILRERHKEQLRIYKEAVAEYYQLKNIKTYVYSYVLSKLIEV 1211


>gi|88855836|ref|ZP_01130499.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
 gi|88815160|gb|EAR25019.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
          Length = 799

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 118/803 (14%), Positives = 229/803 (28%), Gaps = 131/803 (16%)

Query: 11  ESYELIYK--DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
                + +  + WP     ++  NK  +   E     +   A+ +  ++           
Sbjct: 58  RRIAGLLRSQEAWPSQILAITFTNKAAAEMRERVAAIVGNAAEGMWISTFHSACVRILRR 117

Query: 69  LSSFF-LTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKIRDRFNTYKMFK 121
            +  F  ++ FT   +  ++ + K+     +       + K+ +    +++       F 
Sbjct: 118 EAEAFGFSKNFTIYDSADSKALLKRILKELDADMYGLTVSKAANRISGLKNELTDVDGFA 177

Query: 122 STLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                   A+     +   Y          DF+DLI  T  L +       I     +  
Sbjct: 178 RDANLSDPAEKKFLEVFRRYTRGLSDANAFDFDDLIGQTVYLFR---AFPHIAATYQRRF 234

Query: 178 NHILIDEVQDTSLIQWEVIRSLT------------EDFFVGKNTHSSPRTLFAVGDEKQS 225
            HIL+DE QDT+  Q+ +IR LT                 G        +L  VGD  QS
Sbjct: 235 KHILVDEYQDTNHAQYSLIRELTRPPAPEQFETSPGVLVQGSTNELEAASLTVVGDSDQS 294

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY+F GA+ + ++  +R   +         ++I L  ++RST  IL   + V S   + +
Sbjct: 295 IYAFRGADIRNIVEFERDFPRS--------TVILLEQNYRSTQTILDAANAVISHNFDRK 346

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                                                  +   +T Y             
Sbjct: 347 DKKLF---------------------------TTVGAGDKIVGFTGYSGHDE-------- 371

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A+ +A  I  M              +  KD+ V  R    T  +  +         +   
Sbjct: 372 AQFVADEIQKMHDEG----------VAYKDVAVFYRTNSQTRALEEIF----IRAALPYR 417

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETE 464
                   +   IKD       + +  D L+   ++ +P           +         
Sbjct: 418 VLGGTKFYERAEIKDAFGYLIAVANPADPLALRRIMNTPKRGIGPATEAALQAWADDRGM 477

Query: 465 TVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           T+ + ++                 + + + E++   +   P +  T +L      +   S
Sbjct: 478 TLRDAMRNAGELGLGPKVTKAIVDLARLLDEVMAKVETAKPAEILTELLERSGYVRVLRS 537

Query: 520 RFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIM 575
               +     + +DE +  T    +N+    L + ++E+             +   V +M
Sbjct: 538 SLDPQDEARAENVDELIAVTKEFGKNNPDGTLIDFLTEVSLVAAAD--DLDDSSGTVSLM 595

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+HTAKGLE   VFL      +  H+        P                         
Sbjct: 596 TLHTAKGLEYDAVFLTGVEEDLLPHRMSANEPGGP------------------------- 630

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                     E  RL YVG+TRA  +L +      +   + N       + +   +    
Sbjct: 631 ---------AEERRLFYVGITRARKRLFLSLAMTRAQFGEVNVAMPSRYLQEIPADLIEW 681

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
           K+    ++           +                        P +  +   N +    
Sbjct: 682 KQSPGMSNPRGGTQSRALNARRGGGGGSWAGSLREAAAGGLPPAPPRAKTEWANAVTGTV 741

Query: 756 ILNPSTIDTKGKTNLESLLSDNQ 778
             N       G     +   D  
Sbjct: 742 RDNGDLTLAAGDRIRHTDFGDGT 764


>gi|317495222|ref|ZP_07953592.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424]
 gi|316914644|gb|EFV36120.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424]
          Length = 728

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 189/549 (34%), Gaps = 112/549 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +  +Y++  KKN VLDF+DL++ T  L +K      I      +  +I +DE QDT+
Sbjct: 168 VAEIYEYYQKYLKKNSVLDFDDLMLKTIVLFEKHPE---ILAIYQNKFEYIHVDEYQDTN 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           +IQ+++I+ L+E            + +  VGD+ QSIYS+ GA    ++  ++  +    
Sbjct: 225 VIQYKLIKMLSE----------VHKNICIVGDDDQSIYSWRGACSDNIINFEKDYE---- 270

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L  ++RS + IL   + V     + +  +                     
Sbjct: 271 ----DVEVIFLDQNYRSNSTILDAANAVIKNNTDRKDKA--------------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       +++   +   + +  D    +         IA  I ++             
Sbjct: 306 LWS------ENKGGDKIIVYAATNDKDETDD--------IAKKILDLKAQG--------- 342

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +  KDI +L R    +  +            I               I+DL+A    I+
Sbjct: 343 -VDYKDIAILYRANYLSRSMENSCMAF----GIPYKLIGSLKFLQRQEIRDLLAYMNVIV 397

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF----QHV 484
           ++ D+ S   ++  P        + KI         +++E ++     G+SK      H+
Sbjct: 398 NKNDEFSLRRIINVPKRGIGASSMAKIDNYAEQYGLSLFEALKNIDMIGVSKKITTNIHL 457

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
           +  + E     +  S  D    I                      + + E ++   +   
Sbjct: 458 LTQLIEKYSQTEQYSIEDLIVGIYKDSGYESMLKESADAYAESRIENISELVSSAKQFSS 517

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            +      LI  + +   T         + V + TVH AKGLE  VVF++     +F   
Sbjct: 518 MN----DNLIDFISEMSLTSDADDENEDDSVVLSTVHAAKGLEYRVVFIMGLEENLFPS- 572

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                        I        +++  EE  RL YV +TRA ++
Sbjct: 573 -----------------------------IRDAESSEDERNKMEEERRLAYVAITRAKEK 603

Query: 662 LIICKHSNT 670
           L +   +  
Sbjct: 604 LFMSYANRR 612


>gi|255531341|ref|YP_003091713.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366]
 gi|255344325|gb|ACU03651.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366]
          Length = 769

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 100/652 (15%), Positives = 200/652 (30%), Gaps = 118/652 (18%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L   +   Y +   K   +DF+DL+  TN LLK       +  K  Q+  ++++DE QDT
Sbjct: 172 LIGVIYETYTKRCFKAGAMDFDDLLFKTNVLLKTHPD---VLNKYQQKFKYLMVDEYQDT 228

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ +++ L   +          + +  VGD+ QSIY+F GA  + +L  +R      
Sbjct: 229 NFSQYTIVKKLAAAY----------QNICVVGDDAQSIYAFRGANIQNILNFERDYP--- 275

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   + +L  ++RST +I+ V + + +  +N    +  S                 
Sbjct: 276 -----DLKVYKLEQNYRSTQNIVEVANSIIANNKNQLEKNVFS----------------- 313

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                     D++   + +   ++ D         ++A  I                   
Sbjct: 314 ----------DNEAGDRIKVQRAFTD----NEEGKMVAEAIVQE-------------RSS 346

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +     D  +L R    +  +    R L     +               +KDL+A  R  
Sbjct: 347 KGYDYHDFAILYRTNAQSRAMEEALRKL----NVPYKIYGGLSFYQRKEVKDLIAYFRLT 402

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK----FQH 483
            +  D+ +   ++  P     +  + KI         T+++ I         +       
Sbjct: 403 FNPADEEAIKRVINYPRRGLGDTTVEKIMVAADQHNITMWQVICNPQQYIPGRIANQLND 462

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN- 539
               +      A+    ++    I       ++  +    E     + + E LN      
Sbjct: 463 FAVMVQSFAVEAKKLDAYETALYIAQHSGILKELHADQSEEGRGRHENIQELLNGIKEFG 522

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E     SL   + ++       K         V +MT+H++KGLE   VF+V     +
Sbjct: 523 EREDIEDRSLAIFMQDIALLTNDDKADDKNKD-TVSLMTIHSSKGLEFKNVFVVGLEENL 581

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F  +                                       +S  EE  RL YV +TR
Sbjct: 582 FPSQMSLNS----------------------------------RSDLEEERRLFYVAVTR 607

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L +   ++               + +       ++ +K   S   +   + E  + 
Sbjct: 608 AEKKLTLTYSTSRYRWGTLTNCEPSRFIDEINARYLEIEVVKPAKSSLTENSFSDERRSW 667

Query: 718 HPENTPLEREETIK---QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +     + +        +  Q    K  + +           P       
Sbjct: 668 TQQRDTFSKPKPASGGTGTVSTQAPRPKTTAMLPKAHVPTPGFTPDAASAFQ 719


>gi|81300977|ref|YP_401185.1| ATP-dependent DNA helicase Rep [Synechococcus elongatus PCC 7942]
 gi|81169858|gb|ABB58198.1| ATP-dependent DNA helicase, Rep family [Synechococcus elongatus PCC
           7942]
          Length = 794

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 102/635 (16%), Positives = 203/635 (31%), Gaps = 103/635 (16%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y +    N  LDF+DL++    L ++ +    +     Q   H+L+DE QD
Sbjct: 204 RVIGEVYRRYLDQLAANNALDFDDLLLIPVQLFRQNE---QVLAYWHQRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++IR LT +    ++    + R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 261 TNRTQYDLIRLLTTNGAETRDFDQWNHRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 320

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           R  +   + ++++L  ++RST +IL   +++              T              
Sbjct: 321 RLPDDDTR-TMVKLEENYRSTENILQAANELIRNNTERIDKVLRPTR------------- 366

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                           + +  +     D + +       A  +   I  +          
Sbjct: 367 ---------------GSGEAIACYRADDEMAE-------AEYVVQQIRQL--------EQ 396

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
           +   +   D  +L R    +             + +           D   +KD++A  R
Sbjct: 397 QHPELNWGDFAILYRTNAQSRAFEDSL----VRWNVPYTVIGGLRFYDRREVKDILAYLR 452

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            I +  D +S + ++  P     +  I ++     E    ++      E +Q  A     
Sbjct: 453 AIANPFDAVSLLRVVNVPKRGVGKTTIGRLVDAAQELNVPLWEILSDSETVQNLAGRSAK 512

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFT 536
                   +      A    P +    +L A     +          +    L+E +N  
Sbjct: 513 GILEFANLVQHFQDQADELRPSELIRQLLEASGYIAELQRSGTDEDEDRRRNLEELVNAA 572

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +++E+ +      LI  L          +   + +V +MT+H +KGLE PVVFLV     
Sbjct: 573 VQHEEENDD--PSLIGFLGTASLASDADNKEANQQVSLMTLHASKGLEFPVVFLVGLEQG 630

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F                                              EE  RL YVG+T
Sbjct: 631 LFPS----------------------------------FRSLDDPRAVEEERRLCYVGIT 656

Query: 657 RASDQLIICKH-----SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           RA ++L +             E         ++  +         + +   +        
Sbjct: 657 RAQERLFLTHASARRLWGGGREPAIPSNFLSELPAELIVGHSPQTRRQTQANFKPPVTHE 716

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
              S          + + ++Q     ++  +L   
Sbjct: 717 RRASLRDRVAANAAKVQQVQQPARHWQVGDRLQHR 751


>gi|124266478|ref|YP_001020482.1| DNA helicase/exodeoxyribonuclease V subunit A [Methylibium
            petroleiphilum PM1]
 gi|124259253|gb|ABM94247.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylibium
            petroleiphilum PM1]
          Length = 1086

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 158/931 (16%), Positives = 300/931 (32%), Gaps = 108/931 (11%)

Query: 21   WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ--TQCIEERFSLLSSFFLTQKF 78
            W       S ++         G          L+QA           F        T+  
Sbjct: 248  WLAQPDIRSALSTLAVALGAAGGKKSRDAGSALEQALAGIEADPSAAFDAAWQALFTKTG 307

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
              +K I    +N+ +  L+           +  D+   ++        + L++ L A Y 
Sbjct: 308  ELRKQIDAPGLNEAADVLR--------RIAEAMDQQAAHRAHAR---MVRLSRVLLASYR 356

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            + K+   + D  DL      LL   ++S W++ ++D  + H+LIDE QDTS +QW  + +
Sbjct: 357  QLKRDRGLADMADLEACAEHLLADAELSGWVQERLDARVRHLLIDEFQDTSPLQWRTLDA 416

Query: 199  LTEDFFVGKNTHSSPRTL--FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
                +       S  R L  F VGD KQSIY F  A+P+   + +              +
Sbjct: 417  WLSGYAGAGGGSSGQRPLSVFIVGDPKQSIYRFRRADPRVFAQAR-----DFVVTALDGA 471

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
             +    + R+   +L V++ VF+  +      +       H +      G V L   V  
Sbjct: 472  HLACDHTRRNAPRVLAVLNAVFAHAQAGGRFDDFR----PHTTDVSEPPGAVWLLPAVPR 527

Query: 317  QHDSQCNPQQESWTSYF---DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                        W        + P+E    I A ++A  I+ ++             +  
Sbjct: 528  PEKGGPVVAAGGWRDSLTTPRTEPEEVLRRIEAEQVAVGITALLAEG---------GLAP 578

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             DI VL RKR    L+    R       +     ++  L     ++DL+AL   + S   
Sbjct: 579  GDIQVLCRKRAPLALVAQALRE----RGVPHATPEQRELMAAPEVRDLVALLDALASPSH 634

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-EYIQKFANCGISKFQHVIKYIHELI 492
            DLSF   LKSP+F  S+DD+  +          + E + + A  G +            +
Sbjct: 635  DLSFAQALKSPVFGASDDDLVALARAARAERLAWSEVLLRGAGAGRAALDRARALWPGWL 694

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              A    PHD    I+   + R+++ +          +  +D  L  +L  +   +++  
Sbjct: 695  AAAAALPPHDLLDRIVDEGEVRERYAAVVPPAGRLLALAAIDALLAQSLLLDGARHATPY 754

Query: 549  ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              +         +     +  + V+++T+H AKGLE+  VF++DT  +    +    +  
Sbjct: 755  NFVR--ALRRRRVLLPPQSAADAVQLLTIHGAKGLEARAVFVIDTMPEAPKAETATLLID 812

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             P+    P    ++         +  L+   ++    E    LYV MTRA ++L+     
Sbjct: 813  WPADAAHPHCCAFVASESRCPPSLRALMAAEQEGRAREELNALYVAMTRARERLVFSAT- 871

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                                              +     W     +         +   
Sbjct: 872  -----------------------------TPHRAAPGPSAWQRLAEAGADAVPPSADAGG 902

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
            T       +     L  P      EP     +  DT             +    G  +H+
Sbjct: 903  TAGSAGSAESPVVLLALPRVRLAAEPSDPVAADADT-------------EAAQLGRAVHR 949

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
            +L+ +             +         P      +   +  +L +         ++   
Sbjct: 950  VLEWLPADAALDAAAAAAAI----EFALPPDAAPRVAALVRAVLGSAACARFFDPEALHW 1005

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQ----NIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
                  I      +    RID++           ++ +YK      Q        +  QL
Sbjct: 1006 SGNEVAIAWRGAAL----RIDRLVALHTPAGPEWWVLDYK-----LQHAPQAIEAYREQL 1056

Query: 905  SIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            + Y + ++     +S+    I  +  +V  +
Sbjct: 1057 AGYREAVQSLQGGESVRAAFI-TAAGEVIEL 1086


>gi|21223175|ref|NP_628954.1| ATP-dependent DNA helicase II [Streptomyces coelicolor A3(2)]
 gi|8218198|emb|CAB92660.1| putative ATP-dependent DNA helicase II [Streptomyces coelicolor
           A3(2)]
          Length = 831

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 120/728 (16%), Positives = 226/728 (31%), Gaps = 134/728 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 183

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + K  +LK +L   +D              F+ T   
Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEED------FAAQAADGFEKT--- 233

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 234 ---LAQAYAMYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287

Query: 187 DTSLIQWEVIRSLTEDFFVG-----KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           DT+  Q+ ++R L                  P  L  VGD  QSIY+F GA  + +L+ +
Sbjct: 288 DTNHAQYALVRELVGVPSEHPVDVPPEAEVPPAELCVVGDADQSIYAFRGATIRNILQFE 347

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         + I L  ++RST  IL+  + V    E+ +  +             
Sbjct: 348 EDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------- 386

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW        +Q +  Q +         +       A+ +A  I  +     
Sbjct: 387 --------LW-------TNQGSGAQITGYVADTEHDE-------AQFVADEIDRLTDAGE 424

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                     +A D+ V  R    + +   +         +           +   ++D+
Sbjct: 425 ---------AKAGDVAVFYRTNAQSRVFEEVF----IRTGLPYKVVGGVRFYERKEVRDV 471

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480
           +A  R + + ED +    +L  P     +     I    + E  +  + +++        
Sbjct: 472 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALSQREKISFPQALRRVDEAYGMA 531

Query: 481 FQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
            +           + +L  I +  + P      IL       +  +    +    I+ L 
Sbjct: 532 ARSANAVKRFNTLMEDLRTIVESGAGPATVLEAILERTGYLAELQASTDPQDETRIENLQ 591

Query: 531 EFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLE 584
           E     L  EQ          L + + ++     + +     + +  V +MT+HTAKGLE
Sbjct: 592 ELAAVALEFEQERAEGEEAGTLADFLEKVALVADSDQIPDEEDGDGVVTLMTLHTAKGLE 651

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVVFL      VF H                                       +    
Sbjct: 652 FPVVFLTGMEDGVFPHMRALG----------------------------------QAKEL 677

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           EE  RL YVG+TRA ++L + + +  S   + +       + +        K+       
Sbjct: 678 EEERRLAYVGITRARERLYLTRSTLRSAWGQPSYNPPSRFLEEIPAPHLEWKRTGANGPA 737

Query: 705 NKDEWIAY 712
                   
Sbjct: 738 PSAPVSGV 745


>gi|120405823|ref|YP_955652.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1]
 gi|119958641|gb|ABM15646.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1]
          Length = 775

 Score =  294 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 107/633 (16%), Positives = 183/633 (28%), Gaps = 128/633 (20%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   + A Y+   +    LDF+DLI  T  +L+       I     +   HIL+DE 
Sbjct: 181 LARIIASVYAEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHILVDEY 237

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+ ++R L             P  L  VGD  QSIY+F GA  + +   +R   
Sbjct: 238 QDTNHAQYVLVRELVG---TETVDGVPPAELCVVGDADQSIYAFRGATIRNIEDFERDFP 294

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                     + I L  ++RST  IL   + V +     +                    
Sbjct: 295 N--------ATTILLEQNYRSTQTILNAANSVIARNVGRRDKR----------------- 329

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW             +        +   +       AR +A  I  +         
Sbjct: 330 ----LW-------TDAGEGELIVGYVADNEHDE-------ARFVAQEIDALSDAVAD--- 368

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D+ V  R    +  I  +         I           +   I+D++A  
Sbjct: 369 -----FSYNDVAVFYRTNNSSRAIEEVF----IRAGIPYKVVGGVRFYERREIRDIVAYL 419

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA---------NC 476
           R + +  D +S   +L +P     +     +      T   +      A           
Sbjct: 420 RVLDNPGDSVSMRRILNTPRRGIGDRAEACVAVYAETTGANFNDALAAAAEGKVPMLNTR 479

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
                +  ++ + EL          D    +L     R +  +    +    +D L+E +
Sbjct: 480 SEKAIKGFVELLDELRGGLDGE-LGDLVETVLDRTGYRAELEASSDPQDLARLDNLNELV 538

Query: 534 NFTLRN------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VR 573
           +                       +         L + LE+            H    V 
Sbjct: 539 SVAHEFSIDLANAKALASEEGAEPQDEDVPDTGVLAAFLERVSLVADADDIPEHGAGVVT 598

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE PVVF+      +F H                                 
Sbjct: 599 MMTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDPG------------------------- 633

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                       E  RL YVG+TRA  +L + +    S+  +         + +      
Sbjct: 634 ---------ELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELI 684

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++ +  +S +     A  +    P  T    
Sbjct: 685 DWRRTEQPSSFSAPVGNAGRYGAPRPSPTRPAA 717


>gi|332168825|gb|AEE18080.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 795

 Score =  294 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 110/713 (15%), Positives = 225/713 (31%), Gaps = 137/713 (19%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150
           K   ++ ++   ++  I +R   N  ++ ++   +       + A Y +   K   +DF+
Sbjct: 157 KYKQIQNRISSFKNSLITVRAYQNDPELVEADAMAKRPRMGEIYAEYVDRCFKAGAMDFD 216

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN+LL +      +  K      +IL+DE QDT+  Q+ ++++L++ F       
Sbjct: 217 DLLLRTNELLNRFPE---VLNKYQNRFKYILVDEYQDTNHSQYLIVKALSDKF------- 266

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              + +  VGD+ QSIY+F GA    +L  ++  +          ++  L  ++RS+  I
Sbjct: 267 ---QNICVVGDDSQSIYAFRGANINNILNFQKDYEN--------VAMYRLEQNYRSSKVI 315

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + V    +     +  +                                 +     
Sbjct: 316 VEAANSVIEKNKTRLDKTVWTANP---------------------------DGGEIIVHR 348

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           S  D            R +A +I         F N     +   D  +L R    +  + 
Sbjct: 349 SPTDGEEG--------RYVASSI---------FENRMNHQLMNGDFAILYRTNAQSRAME 391

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD++   R +++ +D+ +   ++  P      
Sbjct: 392 DALR----KRDIPYRIYGGLSFYQRKEIKDVLGYLRVLINPKDEEALKRVINYPARGIGG 447

Query: 451 DDIFKICTQRHE-TETVYEYIQKFAN---------CGISKFQHVIKYIHELIHIAQFCSP 500
             I K+         +++E ++K               +K ++ +  I     + +    
Sbjct: 448 TTIDKLTVAAKHYGRSMFEVMEKIEQLGPSMNINRGTQTKLKNFVTMIKSFQILNEQSDA 507

Query: 501 HDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--EQNSYSSLQE-LISEL 554
                 +       Q+       E    I+ ++E LN       EQ   +     L   L
Sbjct: 508 FTVAEKVAKKTGLLQELKKDGTPEGVARIENIEELLNGMRDFVEEQKELADTTGSLAEFL 567

Query: 555 EQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           E         +   + + V +MT+H AKGLE P V++V     +F               
Sbjct: 568 EDVALATSMDNDTGDDDRVALMTIHLAKGLEFPFVYIVGMEEDLFPSGMS---------- 617

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                      +S  EE  RL YV +TRA  Q  +    +    
Sbjct: 618 ------------------------MSTRSELEEERRLFYVALTRAEKQAYLTYTESRYRW 653

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K         + +        +   + N       I                +  ++  
Sbjct: 654 GKLVDAEPSRFIEEIDDKYLDYQTPMMRNRYKSLMDIDEYGEVD---------KSKLRLK 704

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
                 P ++ +P ++ + +   + P        +  E + S       G ++
Sbjct: 705 KPVSGTPPRVGNPSQDQLRKLRKIRP-------TSGDEPVSSLAGALEAGTVV 750


>gi|16803799|ref|NP_465284.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e]
 gi|16411213|emb|CAC99837.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e]
          Length = 731

 Score =  294 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 185 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 241

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 242 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 283

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 284 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 315

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 316 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 359

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 360 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 415

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 416 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 475

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 476 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 535

Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K    +   +  V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 536 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 585

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 586 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 621

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 622 LYGRPSSNQESRFIGEIPRDLLELGNE 648


>gi|227523030|ref|ZP_03953079.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290]
 gi|227089848|gb|EEI25160.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290]
          Length = 743

 Score =  294 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 110/694 (15%), Positives = 217/694 (31%), Gaps = 141/694 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + + +  V   N             + ++   L   S        
Sbjct: 30  GAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLDESGDDVWVST 89

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQEINK-----KSPDLKEKLKKSQDE 106
           F  L                 F     + Q+ ++ + + +     K  D +  L    + 
Sbjct: 90  FHALCVRILRRNIDQLGFNRAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNA 149

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +          ++      +   +   Y+   ++N  LDF+DLI+ T +L    D  
Sbjct: 150 KNDLLT--PKAFKAQADSDFDQIVADVYERYQAELRQNESLDFDDLIMTTIELF---DQF 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           + +      + ++I +DE QDT+  Q+ ++ +L +            + +  VGD  QSI
Sbjct: 205 SDVLSYYQDKFHYIHVDEYQDTNEAQYRLVNTLAK----------KSKNICVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + +L  K               +  L  ++RST  +L   + V +   N   
Sbjct: 255 YGWRGANMQNILDFKEDYP--------DAHVTLLEQNYRSTKTVLDAANAVIAHNLNRAD 306

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW             ++ S+        +  + +  A
Sbjct: 307 KN---------------------LW-------TENEQGEKISYY-------RGQTENDEA 331

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R +   I   +G                   +L R    + +I            I    
Sbjct: 332 RYVVAKIQEEMGK---------PKRNYGSFAILYRTNAQSRVIEETL----LKANIPYTM 378

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  D   I+D +A    + +  D +SF  ++  P     E  + K+         +
Sbjct: 379 VGGHKFYDRKEIRDALAYLTLLGNPRDSMSFERVINEPKRGIGETSLEKLRTFANDHGWS 438

Query: 466 VYEYIQKFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           + E  +          +         + I ++       +  +    IL          S
Sbjct: 439 LLEASKNIDLANEISSRAKNSISMFEQIISDVAKKLDTMTITELTEEILDKSGYLSTLKS 498

Query: 520 RFGNEVI---DVLDEFLNFTLRNEQNSY-----SSLQELISELEQYPPTIKRAHSANHNE 571
               +     + L+EF++ T + +Q++       +L   +S+L               +E
Sbjct: 499 SKSLQAQTRLENLEEFISVTQKYDQDNPDQVGQDNLVNFLSDLALVSDQD--DLDEETSE 556

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVF++     +F                                 
Sbjct: 557 VTLMTMHAAKGLEFPVVFIMGMEEGLFPLS------------------------------ 586

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                    +S  +E  RL YVG+TRA ++L + 
Sbjct: 587 ----RAAQDESELQEERRLAYVGITRAKEKLYLT 616


>gi|47092912|ref|ZP_00230694.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b
           H7858]
 gi|254825996|ref|ZP_05230997.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194]
 gi|254932795|ref|ZP_05266154.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262]
 gi|255521959|ref|ZP_05389196.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-175]
 gi|47018738|gb|EAL09489.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b
           H7858]
 gi|293584348|gb|EFF96380.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262]
 gi|293595235|gb|EFG02996.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194]
 gi|328466511|gb|EGF37654.1| ATP-dependent DNA helicase [Listeria monocytogenes 1816]
          Length = 733

 Score =  294 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 186/567 (32%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537

Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K           V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650


>gi|163756230|ref|ZP_02163345.1| ATP-dependent DNA helicase II [Kordia algicida OT-1]
 gi|161323842|gb|EDP95176.1| ATP-dependent DNA helicase II [Kordia algicida OT-1]
          Length = 778

 Score =  294 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 118/717 (16%), Positives = 236/717 (32%), Gaps = 133/717 (18%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150
           K   ++ ++   ++  I +R  FN   + ++   +       +   Y +   K   +DF+
Sbjct: 140 KYKQVRSRISSFKNSLITVRAYFNNADLVEADAMAKRPRMGEIYKEYVDRCFKAGAMDFD 199

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN+LL +      +  K      +IL+DE QDT+  Q+ ++++L + F       
Sbjct: 200 DLLLRTNELLNRFPD---VLAKYQNRFRYILVDEYQDTNHSQYLIVKALADRF------- 249

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              + +  VGD+ QSIY+F GA    +L  ++             ++  L  ++RST +I
Sbjct: 250 ---QNICVVGDDSQSIYAFRGANINNILNFQQDYDN--------VAMYRLEQNYRSTKNI 298

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + V    +        +              G +++   V    +           
Sbjct: 299 VEAANSVIEHNKTRLDKVVWTAN---------DPGGKIKVNRSVTDGEEG---------- 339

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                           R +A          +IF    +  +   D  +L R    +  + 
Sbjct: 340 ----------------RFVA---------GSIFETKMREQLTNGDFAILYRTNAQSRAME 374

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD++A  R +++ +D+ S   ++  P     +
Sbjct: 375 DALR----KRDIPYRIYGGLSFYQRKEIKDVLAYLRLVVNPKDEESLKRVINYPARGIGQ 430

Query: 451 DDIFKICTQRHE-TETVYEYIQKFANCGIS-------KFQHVIKYIHELIHIAQFCSPHD 502
             I K+         +++E ++  +   +        K ++ +  I     + +     +
Sbjct: 431 TTIDKLVVAAKHYGRSMFEVMENISKIDLKINKGTKTKLENFVTMIRSFQVMNEGADAFE 490

Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS------SLQELISE 553
               I       Q+       E    I+ ++E LN      +          +L E + +
Sbjct: 491 LTKHITKKTGLVQELKKDGTPEGIARIENIEELLNGIKDFVEGQVEVADATGALAEFLED 550

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +     T       + + V +MT+H AKGLE P V++V     +F               
Sbjct: 551 VALA--TDMDNDKGDDDRVALMTIHLAKGLEFPYVYIVGMEEDLFPSGMSMNT------- 601

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK----HSN 669
                                      +S  EE  RL YV +TRA  Q  +      +  
Sbjct: 602 ---------------------------RSELEEERRLFYVALTRAEKQAYLTYTQSRYRW 634

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                    R   ++          +   +    I+ D +   + S    +     R   
Sbjct: 635 GKLVDAEPSRFIEEIDDKYLDYITPIDNYRFKPLIDNDIFGEVDKSKLRLQKPKSGRPPV 694

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
           +     EQ    +   P  +  + P   + S +D K    +   L ++  F RG I+
Sbjct: 695 VGSPTPEQIRKLRKIKPEASQSSPP---SGSLLDEKL---VPGTLVEHTRFGRGEIL 745


>gi|313890094|ref|ZP_07823729.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121455|gb|EFR44559.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 759

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 122/766 (15%), Positives = 245/766 (31%), Gaps = 140/766 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    ++  N             + ++A  L  A+Q   +   
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKCINPWNILAITFTNKAAHEMRERALALNPATQ-DTLIAT 86

Query: 66  FSLLSSFFLTQK---------------FTPQK--NIITQEINKKSPDLKEKLKKSQDEFI 108
           F  +    L ++                  +     I + +N  S    E+         
Sbjct: 87  FHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKSLNIDSKKWSER--SILATIS 144

Query: 109 KIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++     K +++  + +   +       Y+E  +++  +DF+DLI+ T  L  +    
Sbjct: 145 NAKNDLLDEKAYEAQASDIYTQIVARSYKAYQEELRRSESMDFDDLIMMTLRLFDQNPD- 203

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSI
Sbjct: 204 --VLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------QNICVVGDADQSI 251

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  ++   +          ++ L  ++RST  IL   + V    +N + 
Sbjct: 252 YGWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKTILQAANDVIKHNQNRRD 303

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW           + +   +    D   +       A
Sbjct: 304 KK---------------------LW-------TQNSSGEPIVYYRANDEREE-------A 328

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             IA  +S+M           +R    KD  VL R    +  I            I    
Sbjct: 329 VFIASMVSSM---------CMERGKSFKDFAVLYRTNAQSRTIEEAF----LKSNIPYTM 375

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                      I+D+++    + +  D+LSF  ++  P        + K+      +  +
Sbjct: 376 VGGTKFYSRKEIRDVISYLNIVANPSDNLSFERIVNEPKRGVGPGTLEKLRVFAYDQGMS 435

Query: 466 VYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           + E                    +   + +L +     +  D    +L      Q    +
Sbjct: 436 LLEASSHLFLSPLKGKAAQAIMDLASLLSDLRNRLDQLTITDLAQELLDRSGYLQALTIQ 495

Query: 521 FGNE---VIDVLDEFLNFTLRNEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571
              E    I+ ++EFL+ T   ++     N  + L +L   L +           A+  E
Sbjct: 496 NTLESQARIENIEEFLSVTKNFDEASATSNEENGLDKLGRFLNDLALIADTDDSKADVAE 555

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE P+VFL+     VF      +                          
Sbjct: 556 VTLMTLHAAKGLEFPIVFLIGMEEGVFPLSRSSEEQSELEEERR---------------- 599

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                             L YVG+TRA + L +   +  +   K+N       + +    
Sbjct: 600 ------------------LAYVGITRAEEVLFLTNANTRTLFGKTNYNQPTRFLREISDE 641

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
               K +    S +    + ++  TH  +   L +    ++   + 
Sbjct: 642 LLTYKGLARPTSTSFGVKMTHQNQTHFAQGMSLSQAIQGRKSQAQP 687


>gi|229829264|ref|ZP_04455333.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM
           14600]
 gi|229792427|gb|EEP28541.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM
           14600]
          Length = 753

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 128/773 (16%), Positives = 236/773 (30%), Gaps = 142/773 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+                + ++   L            
Sbjct: 28  GAGSGKTRVLTHRAAYLIDEKGVAPYQIMAITFTNKAAEEMRERINKLVSFGGEAVWVAT 87

Query: 66  FSL--------------LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
           F                  S F       QK++I  +   K  D+  K+ K +     I 
Sbjct: 88  FHSSCVKILRRFADRVGYDSRFTIYDGDDQKSLI--KDVCKYLDIDTKIHKERSFLSVIS 145

Query: 112 DRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                    +     L  A           +   Y+   K N  LDF+DLI+ T +LL+ 
Sbjct: 146 HAKENLVGPE---TFLQEAAGDFNRTRQGQVYREYQARLKANNALDFDDLIMKTVELLRG 202

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               + +R    +  ++I++DE QDT+  Q+E++R L + +          R L  VGD+
Sbjct: 203 D---STVREYYQRRFHYIMVDEYQDTNTAQFELVRLLADGY----------RNLCVVGDD 249

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA    +L  +               +I+L  ++RST +ILT  + V +   
Sbjct: 250 DQSIYRFRGANIYNILHFEEHYP--------DAKVIKLEQNYRSTQNILTAANGVIANNT 301

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +  S                     LW        +     ++     FDS  +E   
Sbjct: 302 GRKDKS---------------------LW--------TDSGEGEKVLLKQFDSAYEE--- 329

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  +A +I++++                +D  +L R    + L+            I
Sbjct: 330 ---AEFVADSIASLVRRGE---------YSYRDCAILYRTNAQSRLLEEKLVAD----NI 373

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                          +KDL++  + I + +DDL+   +L  P        + ++      
Sbjct: 374 PYKIFGGVNFYARREVKDLVSYLKVIDNAQDDLAVRRVLNVPRRGIGATSMDRVQAYANS 433

Query: 462 ETETVYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                Y+ + +           +K    I  I     +            I+      + 
Sbjct: 434 NGLDFYQAMTRAGQIQGLARAAAKILAFISLIERARQVLAQEGISKSLLYIIDQTGYVEG 493

Query: 517 FISRFGNEVI---DVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEV 572
             +   +E     D +DE +N  +  EQ     SL + + ++             + + V
Sbjct: 494 LKAEGTDEARARIDNIDELINKVILYEQETEEPSLNDFLEQVSLVADID--QLEESADYV 551

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H+AKGLE P V+LV     +F                                  
Sbjct: 552 SLMTLHSAKGLEFPNVYLVGMEDGLFPS-------------------------------Y 580

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY--DSFH 690
             +         EE  RL YVG+TRA + L +          +    +    V    +  
Sbjct: 581 MSITAENADEEIEEERRLAYVGITRAKEHLTVTAARMRMVRGEMQYASLSRFVEEIPAEA 640

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
            D  +      ++   +      + +                        K  
Sbjct: 641 IDGNLPDRNRADAFAWENAEGPCYGSVAYARGNAAEIRKKTSAQKYAAAAKNF 693


>gi|46907989|ref|YP_014378.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b
           F2365]
 gi|46881259|gb|AAT04555.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 733

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKVSKDLVAFHDLIRGFTQMQDF 477

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537

Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K    +   +  V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650


>gi|224499522|ref|ZP_03667871.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes Finland
           1988]
 gi|224503315|ref|ZP_03671622.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-561]
          Length = 733

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 186/567 (32%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537

Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K           V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650


>gi|190571383|ref|YP_001975741.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|213018782|ref|ZP_03334590.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
 gi|190357655|emb|CAQ55099.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus
           Pel]
 gi|212995733|gb|EEB56373.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus
           JHB]
          Length = 637

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 102/557 (18%), Positives = 187/557 (33%), Gaps = 121/557 (21%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 A  +   Y+E  K    +DF DL++    L  K      +      +  ++++D
Sbjct: 162 RPVYVTALKVYYQYQERLKFLNSVDFGDLLLYNIQLFNK---KTEVLSYYQNKFKYVMVD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ IQ+  ++ L ++             +  VGD+ QSIYS+ GAE + +L+    
Sbjct: 219 EYQDTNAIQYLWLKYLAKE----------HSNICCVGDDDQSIYSWRGAEVENILKFSDD 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
            +            ++L  ++RST+ I+     V +  +                     
Sbjct: 269 FKN--------AKTVKLECNYRSTSHIIATASYVINHNKTRLEKK--------------- 305

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 LW        +    ++ +    +D   +       AR I+  I  +       
Sbjct: 306 ------LW-------TTNIEGEKVNLIKLWDGKAE-------ARFISEQILKL------- 338

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +  DI VLVR    T ++          Y I           +   ++D++A
Sbjct: 339 -----NKYRFSDIAVLVRATFQTRVLEEYF----IKYSIPYKIISGVKFYERQEVRDIIA 389

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANC 476
             R + +  DDL+F  ++  P  +     + KI  T +    + +E  +      +    
Sbjct: 390 YLRLVTNNNDDLAFERIVNRPKRSIGATTLKKIYTTAQDNKISFFEAAKILVNSDQVTER 449

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLN 534
                   +  I     I      H+F  ++       +   +    G   I+ + E ++
Sbjct: 450 IKLSLNDFLNKIKAWEEIVSVKPLHEFVKIVANQSGYMEMLENEGVTGLARIENVKELIS 509

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                +          I+ LE     ++  +  + + V +MT+H AKGLE P VFL    
Sbjct: 510 SLKNFDST--------ITFLEHISLVMEVDNMNSDDTVYVMTLHAAKGLEFPCVFLPGWE 561

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F H+                                   +       EE  RL YVG
Sbjct: 562 EGLFPHQRS--------------------------------FEDKSGKALEEERRLAYVG 589

Query: 655 MTRASDQLIICKHSNTS 671
           +TRA ++LII       
Sbjct: 590 ITRAKERLIISCADRRE 606


>gi|56751936|ref|YP_172637.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
 gi|56686895|dbj|BAD80117.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
          Length = 794

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 103/626 (16%), Positives = 195/626 (31%), Gaps = 98/626 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y +    N  LDF+DL++    L ++ +    +     Q   H+L+DE QD
Sbjct: 204 RVIGEVYRRYLDQLAANNALDFDDLLLIPVQLFRQNE---QVLAYWHQRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++IR LT +    ++    + R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 261 TNRTQYDLIRLLTTNGAETRDFDPWNHRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 320

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           R  +   + ++++L  ++RST +IL   +++              T              
Sbjct: 321 RLPDDDTR-TMVKLEENYRSTENILQAANELIRNNTERIDKVLRPTR------------- 366

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                           + +  +     D + +       A  +   I  +          
Sbjct: 367 ---------------GSGEAIACYRADDEMAE-------AEYVVQQIRQL--------EQ 396

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
           +   +   D  +L R                  + +           D   +KD++A  R
Sbjct: 397 QHPELNWGDFAILYRTNAQPRAFEDSL----VRWNVPYTVIGGLRFYDRREVKDILAYLR 452

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            I +  D +S + ++  P     +  I ++     E    ++      E +Q  A     
Sbjct: 453 AIANPFDAVSLLRVVNVPKRGVGKTTIGRLVDAAQELNVPLWEILSDSETVQNLAGRSAK 512

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFT 536
                   +      A    P +    +L A     +          +    L+E +N  
Sbjct: 513 GILEFANLVQHFQDQADELRPSELIRQLLEASGYIAELQRSGTGEDEDRRRNLEELVNAA 572

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +++E+ +      LI  L          +   + +V +MT+H +KGLE PVVFLV     
Sbjct: 573 VQHEEENDD--PSLIGFLGTASLASDADNKEANQQVSLMTLHASKGLEFPVVFLVGLEQG 630

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F                                              EE  RL YVG+T
Sbjct: 631 LFPS----------------------------------FRSLDDPRAVEEERRLCYVGIT 656

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA ++L +   S         +             +  V     T    +  +       
Sbjct: 657 RAQERLFLTHASARRLWGGGREPAISSNFLSELPAELIVGHSPQTRRQTQANFKPPVTHE 716

Query: 717 HHPENTPLEREETIKQLMDEQKIPKK 742
                         K    +Q     
Sbjct: 717 RRASLRDRVAANAAKVQQVQQPARHW 742


>gi|313123176|ref|YP_004033435.1| ATP-dependent DNA helicase pcra [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279739|gb|ADQ60458.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 753

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 122/767 (15%), Positives = 239/767 (31%), Gaps = 137/767 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   +V+  N             + ++   L            
Sbjct: 30  GAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLLGDQAESIWMST 89

Query: 66  FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPDLKEKL-KKSQDEFIKI 110
           F  L    L +                + Q  ++ + + +   D K+ L +    +    
Sbjct: 90  FHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQLDLDPKQYLPRNILSQISNA 149

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++R  T K ++++       +   +   Y+ + +++ +LDF+DLI+ T  L K    S  
Sbjct: 150 KNRLQTPKQYEASAVGPFEKVVADVYKKYQASLERDQILDFDDLIMQTLTLFK---ASPD 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 Q+  ++L+DE QDT+  Q+E+ R L + +            +  VGD  QSIY 
Sbjct: 207 TLAYYQQKFRYLLVDEYQDTNEAQYELCRLLADGY----------HNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +   +            ++L  ++RST  IL   + V    EN +   
Sbjct: 257 WRGANMENILNFEHDYKN--------AQTVKLEQNYRSTGHILKAANSVIDHNENRKAKK 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW         + + ++  +        +        R 
Sbjct: 309 ---------------------LW-------TDKGDGEKVHYYQAQSDRDET-------RF 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +           +  + +D  VL R    +  +            +      
Sbjct: 334 VLAKIKEEVDQ---------KKRRYQDFAVLYRTNAQSRGMEETLVE----ANVPYQIVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   IKD+MA  + + +  D +SF  ++  P     +    K+          +Y
Sbjct: 381 GHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQATTSKLAAFADEMGGGIY 440

Query: 468 EYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E I+       ++    K       +   I  AQ  +  +    IL      +       
Sbjct: 441 EAIRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDKILEDFGYIKALKEEEA 500

Query: 523 N------EVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYP-PTIKRAHSANHNE 571
                    ++ L EF   T R +    +        L   L +    + +     + + 
Sbjct: 501 QGSLEAAARLENLQEFATVTKRFDDNYNEEENPDSSRLSDFLAEVSLLSDQDDLEESDDR 560

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F                                 
Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEDNIFPLSR----------------------------- 591

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               IK    +  EE  RL YVG+TRA ++L +                    +      
Sbjct: 592 ---AIKDEDPNQLEEERRLAYVGITRAREELYLTSAYTRMMYGSKQYNPQSRFI--GEIK 646

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
           DE +  +  T   +   ++  +      ++     +        +  
Sbjct: 647 DEDLDIVASTAPKSSTSFLDLDRLPFAEKSQAKAAQPAKIHRASKAA 693


>gi|293557128|ref|ZP_06675682.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039]
 gi|291600697|gb|EFF30995.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039]
          Length = 745

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 110/663 (16%), Positives = 211/663 (31%), Gaps = 121/663 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A    A Y++  + N  +DF+DLI+NT  L ++   S         + ++I +DE QD
Sbjct: 170 EIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS---LTYYQNKFHYIHVDEYQD 226

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++  L   F          R L  VGD  QSIY + GA+ + +L  ++     
Sbjct: 227 TNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYGWRGADMQNILDFEKDYP-- 274

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I L  ++RST +IL+  ++V     N +  +                   
Sbjct: 275 ------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN------------------- 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW              + ++    +   +        R I   +   I  +       
Sbjct: 310 --LW-------TENKEGNKITYYRADNERDET-------RFIVDRMQEEIRNNHR----- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  +L R    + ++            I           D   IKD++A    
Sbjct: 349 ----NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVGGHKFYDRKEIKDILAYLNV 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQKFANCGI-----SKF 481
           + + +D +SF  ++ SP        I K+ +     E  + E  Q      I      + 
Sbjct: 401 LANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLLEAAQNVDLANIGGKAGQQL 460

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT-- 536
               + I E+  +  + +  +    +L      +    +   E     + L+EFL  T  
Sbjct: 461 GAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNTLEAQARIENLEEFLTVTQE 520

Query: 537 --LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
              + EQ +         +L     +    +       + ++V +MT+H AKGLE PVVF
Sbjct: 521 FDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDASQVTLMTLHAAKGLEFPVVF 580

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                                   
Sbjct: 581 LIGLEEGVFPLSRALMEESELEEERRL--------------------------------- 607

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             YVG+TRA + L +    + +   ++        V +       ++ ++ T        
Sbjct: 608 -AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQELLEIEGMRPTPKKTPVFA 666

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                 ++    T +   ++          P       K  +     ++ ++ D +    
Sbjct: 667 KKTAAYSYKQPETAVVSSKSATGGEKNSWKPGDKVKHKKWGLGTVVRVSGTSKDLELDVA 726

Query: 770 LES 772
             S
Sbjct: 727 FPS 729


>gi|121605093|ref|YP_982422.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120594062|gb|ABM37501.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polaromonas
            naphthalenivorans CJ2]
          Length = 1103

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 150/905 (16%), Positives = 305/905 (33%), Gaps = 94/905 (10%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
                P+   K   L+QA   Q     FS L    LT K TP+K    + +        + 
Sbjct: 283  RASAPSFSAKGVELEQALGAQDRPGIFSAL----LTDKGTPRK-FGDKIVG------IDT 331

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
            ++++Q+  ++++     ++ +        L++ L A Y + K+++  +D  D+      +
Sbjct: 332  VRQAQELVLRVQAACQQHEAWLHQQRMARLSRLLIAQYNQLKREHGWVDMNDVERAALVM 391

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            L    ++ W++ ++D  I H++IDE QDT+ +QW+ + +    +  G     +  ++F V
Sbjct: 392  LGDPVLAGWVQERLDARIKHLMIDEFQDTNPLQWQALSA----WLSGYGGAGAAPSVFLV 447

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD KQSIY F  AEP+     +          G    ++    + R+   ++  V+ V  
Sbjct: 448  GDPKQSIYRFRRAEPQVFRAAQA-----FVVEGLGGDLLSCDHTRRNALAVIDTVNAVMG 502

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                  G       T     +           ++  +  D+          S    LP+E
Sbjct: 503  HARTVDGYDGFREHTTDSAKAGATGCLPAISRQREGADADTSPEAGWRDSLSTPRELPEE 562

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            +  ++ AR+ A  IS  + T           ++  D++VL RKR     +    R L   
Sbjct: 563  TLRTLEARQAAAWISRQLATG----------LKPSDVMVLSRKRAGLLPLQEALRALHIA 612

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +I     ++  L D   + D++AL   ++S + DLS    L+SPLF   +  + ++   
Sbjct: 613  AQI----GEKTDLIDCCEVLDVVALLDVLVSPQHDLSLARALRSPLFGLLDASLVQLALL 668

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
            + E +  +  + +       +   ++ ++           PHD    +        +F +
Sbjct: 669  QKELKLPWSELLQKTELLAPELHALVPFLARWKGWLDSLPPHDALQKMYDDGDVLARFAA 728

Query: 520  RFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                         L   L   L  +   Y++   LI  L+          + N   VR++
Sbjct: 729  AAPAAQRPAVLANLRALLGVALGRDGGRYATPYGLIRALKAGGLLA--PVAVNDAAVRLL 786

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H AKGLE+  V L+DT +   +   +  +   P    +P   +++           + 
Sbjct: 787  TIHGAKGLEAEAVLLLDTDTAPRNADSMGVLVDWPGEATEPRKFVFLVSEARPPACAQEA 846

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
            +   + + + E    LYV MTRA   L I          ++   +W+  +       +  
Sbjct: 847  LAAEQAARKREELNALYVAMTRARHTLAISSIEPH----RATIDSWWQRLQGQVPPLDAP 902

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                                   P        E                           
Sbjct: 903  APPDSLGEKADGAGQEGAAGFPAPAAEVFYLPE--------------------------- 935

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
             L              S+  D      G  +H+LL+                +       
Sbjct: 936  -LPAFEPPAPEPAAEGSVAEDPANARVGKAMHRLLEWGGRSSAEHVGAVAREF------R 988

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-- 873
                + +        +L+      A S ++ +       +      + +    D++    
Sbjct: 989  LNPAQAQEACALAQCILKGE-GAWAWSNEAVAWHGDEIDLVYQGLPLRL----DRLVRRK 1043

Query: 874  ---SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                +   ++ +YK+      +   I       + IY   ++  YP  ++    +     
Sbjct: 1044 DAGFEGQWWVLDYKSAPEPELQPALITK-----MRIYRAAVQRIYPRATVKAAFL-TGRG 1097

Query: 931  KVFII 935
             V  +
Sbjct: 1098 TVVEL 1102


>gi|288927546|ref|ZP_06421393.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288330380|gb|EFC68964.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 823

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 108/670 (16%), Positives = 211/670 (31%), Gaps = 126/670 (18%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
           N   M + T   L+    + A Y +  +    +DF+DL++ T  L  + +    +R +  
Sbjct: 160 NAELMLRDTREHLSAVHKVYATYMQRCRLANAMDFDDLLVLTYRLFAEHED---VRKEYA 216

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
               ++L+DE QDT+ +Q  ++  LT++           R +  VGD+ QSIY F GA+ 
Sbjct: 217 GRFQYVLVDEYQDTNHVQQLIVTLLTKE----------HRRICVVGDDAQSIYGFRGADI 266

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L  ++   +          + +L  ++RST +I+   + + S  +            
Sbjct: 267 DNILDFQQQFPE--------ARLFKLEQNYRSTQNIVKAANSLISHNQ----------RQ 308

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           I+         G   + + V S  +                          A  +   I 
Sbjct: 309 IKKDVFSENDAGEKLMLKPVYSDKE-------------------------EALVVCNDIK 343

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++  +              D  +L R    +       R       I            
Sbjct: 344 RIMNDEQGA---------YSDFAILYRTNSQSRSFEEELR----RQSIPYRIYGGLSFYQ 390

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF 473
              IKD++A  R +++ +D+ +F  ++  P        + K+    +    + +E +   
Sbjct: 391 RKEIKDIIAYFRLVMNVDDEEAFKRIVNYPARGIGNTRLAKVTMAAQQNGVSCWEILSNP 450

Query: 474 ANCG-------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-- 524
           A+          +K Q     ++  +        ++    I+     +    +    +  
Sbjct: 451 AHYQLDVNKGTWTKLQKFRDMVNTFVAELATLDAYELGMKIIKESGIQADLYATSDADSL 510

Query: 525 -VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVH 578
              + L EF+           +        L   L++           +    V +MTVH
Sbjct: 511 TRQENLQEFVGGLREFVDIRREEGNEGEVFLNDYLQEVSLLSDLDSEGDDESRVVLMTVH 570

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P VF+V     +F                                        
Sbjct: 571 SAKGLEFPTVFVVGLEENIFPSPRSTDSP------------------------------- 599

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH-------N 691
                 EE  RLLYV +TRA    I+    N     +    T    + D           
Sbjct: 600 ---RQLEEERRLLYVAITRAERHCILTCAKNRYRFGRMEFDTPSRFIRDIDPSLLNVQNP 656

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                K +L  S+  DE  +  ++         ER     + ++ + +  +  +    + 
Sbjct: 657 MADFSKPRLERSLLSDELPSARYNGGRSARESGERRFDNPRFLNSRPVASQFMADPIPNP 716

Query: 752 NEPYILNPST 761
             P    P+ 
Sbjct: 717 ARPRKPEPAV 726


>gi|126437275|ref|YP_001072966.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS]
 gi|126237075|gb|ABO00476.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS]
          Length = 784

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 103/614 (16%), Positives = 188/614 (30%), Gaps = 127/614 (20%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   + A Y+   +    LDF+DLI  T  +L++      I     +   HIL+DE 
Sbjct: 184 LARIIADVYAEYQRRLRAANALDFDDLIGETVAVLQRFP---QIAQYYRRRFRHILVDEY 240

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPR-TLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           QDT+  Q+ ++R L        +        L  VGD  QSIY+F GA  + +   +R  
Sbjct: 241 QDTNHAQYVLVRELAGHGAHDTDDDGVAPAELCVVGDADQSIYAFRGATIRNIEDFERDY 300

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                      + I L  ++RST  IL   + V +     +                   
Sbjct: 301 PN--------ATTILLEQNYRSTQTILNAANSVIARNAGRREKR---------------- 336

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW           + +        +   +       AR +A  I  +        
Sbjct: 337 -----LW-------TDSGHGELIVGYVADNEHDE-------ARFVAQEIDRLADDGH--- 374

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                     D  V  R    +  +  +         I           +   I+D++A 
Sbjct: 375 -------SYNDFAVFYRTNNSSRALEEVF----IRAGIPYKVVGGVRFYERREIRDIVAY 423

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF-- 481
            R + +  D +S   +L +P     +     +     +   +  + +Q  A   +     
Sbjct: 424 LRVLDNPGDSVSMRRILNTPRRGIGDRAEACVAVYAENTGASFNDALQAAAEGKVPMLNT 483

Query: 482 ------QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
                    ++ + +L          +    +L     R +  +    +    +D L+E 
Sbjct: 484 RSEKCIASFVQMLDDLRGRLGDE-LGELVEAVLDRTGYRAELEASNDPQDLARLDNLNEL 542

Query: 533 LNFTLRN--EQNSYSSLQE---------------LISELEQYPPTIKRAHSANHNE--VR 573
           ++       ++ + ++L E               L   LE+            H    V 
Sbjct: 543 VSVAHEFSIDRANAAALAEDLDEPVDEDIPDTGVLAQFLERVSLVADADDIPEHGSGVVT 602

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE PVVF+      +F H                                 
Sbjct: 603 MMTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDP-------------------------- 636

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  +L + +    S+  +         + +      
Sbjct: 637 --------NELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELI 688

Query: 694 RVKKIKLTNSINKD 707
             ++   T S +  
Sbjct: 689 DWRRTDPTPSFSAP 702


>gi|254829488|ref|ZP_05234175.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165]
 gi|284802203|ref|YP_003414068.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578]
 gi|284995345|ref|YP_003417113.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923]
 gi|258601903|gb|EEW15228.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165]
 gi|284057765|gb|ADB68706.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578]
 gi|284060812|gb|ADB71751.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923]
          Length = 733

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLVAFLTD 537

Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K    +   +  V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650


>gi|257126152|ref|YP_003164266.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b]
 gi|257050091|gb|ACV39275.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b]
          Length = 735

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 116/711 (16%), Positives = 229/711 (32%), Gaps = 140/711 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  + Y+    +    +S +N             + ++A  L        +   
Sbjct: 28  GAGSGKTRTVTYRIAHMVKEIGISPLNILALTFTNKAAREMKERAAALIGHEANNLVVST 87

Query: 66  FSLLSSFFLTQKFTP--------------QKNIITQEINKKSPDLKEKLK--KSQDEFIK 109
           F   S   L                    QK+IIT+   +      + ++  K  +   K
Sbjct: 88  FHSFSVRLLKTYSERIGYGRNFNIYDVDDQKSIITKIKKEMGIKDNDNVQPGKLANRISK 147

Query: 110 IRDRFNTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
           ++++    K  +  +        L   +   Y+E  K N  +DF DL++N   LL     
Sbjct: 148 LKEQGIGIKELEREIDMRIPANRLFGEIYQKYDEVLKANNAMDFSDLLLNARKLLDD--- 204

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             ++  +I +   +I++DE QDT+ IQ+E+I  +   +          R +  VGDE QS
Sbjct: 205 -TFVLERIQERYKYIVVDEYQDTNDIQYEMINMIAAKY----------RNICVVGDEDQS 253

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY+F GA    +L  +R  ++           ++L  ++RST  IL   +++    ++++
Sbjct: 254 IYAFRGANINNILNFERDYKEAF--------TVKLERNYRSTKKILDTANELIKNNKSSK 305

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
           G +                     LW           + ++    +      +       
Sbjct: 306 GKT---------------------LW-------TDGSDGEKIKIYNAMTVYDE------- 330

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  I   +                    KD+ +L R    + ++            I   
Sbjct: 331 ADFIVTEMKKKKRDG----------ADYKDMTILYRTNAQSRVLEEKL----LSANIPYK 376

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464
                       IKD++A    + ++ D+ +F  ++  P  +  E  + KI      +  
Sbjct: 377 IYGGMQFFQRKEIKDILAYLSLLNNKNDNHNFYRIINVPKRSVGEKTLEKIQEVANEKNI 436

Query: 465 TVYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           ++ E +       +        +     +  +    +  S  + F  IL   +       
Sbjct: 437 SMLEALHYIDEIPVRAATKLALKEFYNLMQGIYSSLEEMSIKEIFDEILIRTRYIDSI-E 495

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
               + +  ++E LN  +  E+ +   SL E +  +     T       + N V++MT+H
Sbjct: 496 DNKEDRVKNIEELLNSIIELEKQNPNMSLNEYLDMISLSSSTD--EMEDDENYVKLMTIH 553

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           ++KGLE   VFL      +F                                        
Sbjct: 554 SSKGLEFDYVFLAGMEDGLFPSISFDSPEEELEEERRL---------------------- 591

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKH-----SNTSNEKKSNQRTWYDM 684
                        YV +TRA  +L I            +  +   R  Y+M
Sbjct: 592 ------------CYVAITRAKKELFISYSSSRKIWGKDDNLRRPSRFIYEM 630


>gi|254853669|ref|ZP_05243017.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503]
 gi|300765955|ref|ZP_07075927.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017]
 gi|258607048|gb|EEW19656.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503]
 gi|300513341|gb|EFK40416.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017]
          Length = 733

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 185/567 (32%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +                        LW        S   
Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKK---------------------LW-------TSNAE 317

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTD 537

Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K           V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650


>gi|291302043|ref|YP_003513321.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290571263|gb|ADD44228.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 1041

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 140/951 (14%), Positives = 270/951 (28%), Gaps = 144/951 (15%)

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
            +S+  LT +   ++ +   +   +     E+L++   E              K+    + 
Sbjct: 153  MSAVSLTVETVVKRVLSLSDELSEHLREPEELEQFTQELANEIGERVGKGTQKTAQLLMA 212

Query: 129  LAKY-----LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            L        + A Y   K+    +DF D +            +  +     +    +L+D
Sbjct: 213  LQSRLQLLPIVADYRRRKRAEGAVDFADQLHYAAS---AAAAAPEVGRVERERFGVVLLD 269

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS  Q E+++SL                + AVGD  QSIY++ GA    + R    
Sbjct: 270  EYQDTSHAQVELLKSLFG----------GGHPVTAVGDPCQSIYAWRGASTGTLSRFPGD 319

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                    G +   +EL  S+R+ A ILTV + V              T          G
Sbjct: 320  FP---HADGTEADRLELTASWRNRASILTVANTV---------SEPLRTMGFPVSPLEPG 367

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G  ++   +++  D +                        A  +A  I  +   +   
Sbjct: 368  VPGEGEVTAAMLNTADDE------------------------AEWVATRIYRLWADNGFA 403

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +      VL R+R   P +    R       + V       L D   +++L +
Sbjct: 404  PGSPVEGMPPTT-AVLARRRSQIPRLEKALRA----KGLPVEVIGLGGLLDAPEVRELHS 458

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-FQ 482
                +       +F+ +L  P +     DI  +  +  E        +  A         
Sbjct: 459  TLTVLARPTAGPAFMRLLTGPRWRIGPRDIAALHARARELAPERRGFEPSAEGLNEASLA 518

Query: 483  HVIKYIHELIHIAQ--------------------FCSPHDFFTLILGAKKGRQQFISRFG 522
              ++ + +L   +                          D    IL       +     G
Sbjct: 519  EALEDLGDLRRYSDAAAERYTALREELGYLRSRLDQPVSDLIAEILKVSGLDIEVAVHRG 578

Query: 523  NEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTV 577
            +   + LD F++  +R     S  SL   +S L+      +       + +   V+I+TV
Sbjct: 579  D--SERLDAFIDEAVRYTSTASLPSLDGFLSYLDAAEERERGLELTGTTEHTGAVQILTV 636

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHI-------MPSLNDDPGIPIWIPQSKSRNN 630
            H AKGLE   V +      V   K +    +        P   D   +P +     ++  
Sbjct: 637  HAAKGLEWDCVAVPGLAKGVLPGKVMGGSWLTDTGKLPYPLRGDAAELPYFRLGGVTKAA 696

Query: 631  IVSDLIKHLKK----STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
             +S      KK      + E  RL YV +TRA   L  C +     E       + D   
Sbjct: 697  ELSRAEAEFKKDVQFHHEVEERRLAYVALTRARTHLFACGYWWDDGESAREPSPYLDETV 756

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP--------------------ENTPLER 726
             +    +   +     +      ++ +W    P                          +
Sbjct: 757  AAGGRVDEWIEDPGEENPLLATELSADWPEPEPLGSNQITVAAAAGAVRASDGALDDSAQ 816

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------DTKGKTNLESLLSDNQ 778
             +   +  +     +   +    ++  P  L+ S +        +   +           
Sbjct: 817  AKRWAEEAELLLAERAESASDGMEVPVPSQLSVSQLVAWHADAQEFAARLRRPVPEPPAP 876

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               RG   H  ++  F          +              +    L ++          
Sbjct: 877  HTRRGTAFHAWVEKRFD------GGTLFDMDDLPGAADGEPDTDAELAALQEAFNASEWA 930

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIP 897
                  S + ++V        + +++ GR+D +         I ++KT            
Sbjct: 931  ------SRTPIAVEVPFVTVLEGVVVRGRMDAVFATDDGGYEIVDWKTGRPPRGHAAKAA 984

Query: 898  YTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAE 946
               +A    Y +            +     YV +          L +  A 
Sbjct: 985  AVQLA---AYREAWAVLRGVHRSKVSAAFHYVRQNVTVRPSGLPLLEQLAA 1032


>gi|69246832|ref|ZP_00604141.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO]
 gi|68195065|gb|EAN09527.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO]
          Length = 744

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 120/760 (15%), Positives = 243/760 (31%), Gaps = 138/760 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 91  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +A    A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKEFQYNQCMDFDDLIMNTIRLFEEHPDS-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    +++ +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 382 GHKFYDRKEIKDILAYLNVLVNPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  +  + +  +    +L      +    +  
Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++ ++ T            +S   PE   +  +   
Sbjct: 648 ELLEIEGMRPTPKKTPVFAKKTAYSYKQPETAVVPSKSAT 687


>gi|325680777|ref|ZP_08160315.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8]
 gi|324107557|gb|EGC01835.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8]
          Length = 1234

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 140/958 (14%), Positives = 287/958 (29%), Gaps = 144/958 (15%)

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA----KKKN 144
              +   D+   L+ +       ++               +    L    EE     K + 
Sbjct: 310  FKQDIGDVASILRSAAFGLDLSKEHLRA--SLDEAEKLFSAMCDLERRVEEISYDIKLER 367

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN------HILIDEVQDTSLIQWEVIRS 198
              +DF D+ + T +LL K     + R ++ +EI        I+IDE QD + IQ  + ++
Sbjct: 368  NAVDFSDIELMTKNLLVKETEDGFERTELAEEIRSGNFYEIIMIDEYQDVNDIQEMIFKA 427

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +++      +     +  F VGD KQ+IY F    P+       +   R     +    I
Sbjct: 428  VSD----TDDLRFMGKNTFIVGDMKQAIYGFRKTNPELFKTCIEL--ARDHAEERSLEHI 481

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  +FRS  +++ + + +F    +      D     R  +                +++
Sbjct: 482  SLQKNFRSRKEVIALSNYLFETLMSEGCGQVDYDDGERLEA---------------GAKY 526

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDIL 377
              +  P +       D       A     R+A  I  MI     +  +G  R  +  D  
Sbjct: 527  TERDCPAEVMLVDVPDDKSGSIPAEF--ERVAVRIKKMIDNGDPVCEDGVDRPCRQSDFC 584

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +LV    +          +           D         I   + + R + +  +D++ 
Sbjct: 585  ILVNTNDNIRQAADALSAVGLRA----FCEDTDGYIKSREISLALDVLRSVDNPMNDIAL 640

Query: 438  VCMLKSPLFNFSEDD------------------IFKICTQRHETETVYEYIQKFANCGIS 479
              ++ SP+  F+ DD                  I++I +         E   K+ + G  
Sbjct: 641  AAVMMSPIMGFTPDDMTRVRIKCRSDKTKKLNHIYQILSGASREPNTDEKYAKYVDMGDE 700

Query: 480  ----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLN 534
                K +     I  L + +   S       I                 +    L   L 
Sbjct: 701  VLQAKCREAFDMIESLRYCSMSMSLERLIRQIFDKTDLMGITSLYLDSAKKRANLRLLLQ 760

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVRIMTVHTAKGLESPVVF 589
            +    E++    +   +  ++      K      + +++ + V I T H +KGLE P VF
Sbjct: 761  YAGDYERSGNEGVTGFLRFIDSVSGNDKAFKNAVSVTSDGDSVNIKTYHKSKGLEYPFVF 820

Query: 590  LVDTGSQVFSHK-HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            L     ++         + +  S      +       +  N     L + L +  + E  
Sbjct: 821  LCTLSKKLVRDDARGDMIRLHKSEGCAFRLKNTRLNVERVNLYYDYLTELLDREQKSEKM 880

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            RL YVG TRA ++LI+   +  +   ++N      M+ D+  + E   KI    +  +D 
Sbjct: 881  RLFYVGCTRAKEKLILVFSNEKTG--RTNHDRIRQMLCDAVRDSEIFDKIPANIAAEQDS 938

Query: 709  WIAYEWS---------------------------------------THHPENTPLEREET 729
             +A+                                          T        E +  
Sbjct: 939  MLAWAVMALAKLDGCGHLEEWLGMALDDVKKISPKEQVSLTYYEDDTEAVRKGDDEEDAE 998

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK--------------------TN 769
            + ++  +  I  +L    K   +    L P+ +                           
Sbjct: 999  VIRVGADPAIVARLLKKYKTAYSTSESLLPAKLTVTEIVTAEKTKEFGSKNPEFFPNLPK 1058

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
            L   L       RG   HK +++       +             ++   +     +  + 
Sbjct: 1059 LTEELDKLTAAERGTYTHKFMELADYKKAAENVRNELERLKNIGRMTEREAKGVYVDRLE 1118

Query: 830  RLLENPMMTTAMS-CDSYSEVSVSGKI----------NCPKKDIIISGRIDQISISQQNI 878
            + ++       M+  D   E      +          +   ++  I G  D I   +   
Sbjct: 1119 KFVKTDFFARMMASSDLRREQKFLASVKDLKLGDKLKDYTTENGYIQGIADCIFKEEDGW 1178

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
             + +YKT +   ++       +  QL +Y+   +  +  +     +      +     
Sbjct: 1179 VLVDYKTDNFKDKDDMR---KYGTQLMLYKAAFELLFGERVKSSYIYSFKLGEGLEFD 1233


>gi|47095685|ref|ZP_00233292.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254900736|ref|ZP_05260660.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J0161]
 gi|254913779|ref|ZP_05263791.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818]
 gi|254938166|ref|ZP_05269863.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900]
 gi|47015970|gb|EAL06896.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258610779|gb|EEW23387.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900]
 gi|293591795|gb|EFG00130.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818]
          Length = 733

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 104/567 (18%), Positives = 186/567 (32%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRF 243

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNV 417

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 418 PKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDF 477

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLVAFLTD 537

Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K           V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650


>gi|313623351|gb|EFR93578.1| ATP-dependent DNA helicase PcrA [Listeria innocua FSL J1-023]
          Length = 696

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 102/567 (17%), Positives = 185/567 (32%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 150 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF 206

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 207 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYP--------SAKTILLEEN 248

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        +   
Sbjct: 249 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TNNAE 280

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +   +             D  +L R  
Sbjct: 281 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNNSSR---------PLSDFAILYRTN 324

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 325 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 380

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    I     +  F
Sbjct: 381 PKRGVGPGTLEKLNNVAAAYDLSLFEVLNRIELAGISAKISKDLVAFHDLIRGFTQMQDF 440

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 441 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLLAFLTD 500

Query: 554 LEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K           V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 501 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 550

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 551 ------------------------RAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRM 586

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 587 LYGRPSSNQESRFIGEIPRDLLELGNE 613


>gi|56750402|ref|YP_171103.1| hypothetical protein syc0393_c [Synechococcus elongatus PCC 6301]
 gi|56685361|dbj|BAD78583.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 1061

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 155/943 (16%), Positives = 304/943 (32%), Gaps = 111/943 (11%)

Query: 2    KNRFGLSLNESYELIYKDL-WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +     +  +  + I +   W      +S  +   + ++      IL  + TL       
Sbjct: 177  REVLAQAQRDRLQQIQQSSDWQAAIEDLSGASWREADALSDQIQQILAWSDTLFD-PANS 235

Query: 61   CIEERFSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
              +  +       LTQ  + +        + +  +   L+++L+   +  + +R      
Sbjct: 236  NWQATYDEFIKLKLTQAGSAKNWGSADTAKLLRTQCKVLRDRLRDE-ESLLSLRPNEADD 294

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                         + +    +  K+++  LDF DL       L+    S  +R    Q  
Sbjct: 295  WNRDQRSRIYEAFETVLKSIDARKRQDRCLDFNDLERGAVRALE----SEAVRSHYQQRW 350

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             +  +DE QDT+  Q +++++L                L  VGDEKQSIY F GA  +  
Sbjct: 351  RYCFVDEFQDTNPTQSQILQAL---------WDPQHLILTLVGDEKQSIYGFRGAATQVF 401

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                     +      +  I+ L  SFR+   +L  +++VF    +             +
Sbjct: 402  RNW------QQQIQQHQGHIVTLSQSFRTHQTLLETINQVFEPVLD------------PY 443

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            +  R  +     L        + +     E             +    A  IA  I   I
Sbjct: 444  QPLRSDRQPPHPLPPIQQLVIEPEEKDSLE------------QARIQEATAIAQQIQTWI 491

Query: 358  GTDTIFSNG---KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                +  +    + R I   DI +L R+R     +  +   + N   I V+ N    L +
Sbjct: 492  QQPLLVWDKPSNQHRPIAYGDIAILCRRR---APLETVYGEVLNQAGIPVLVNGGGSLLE 548

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                 DL AL  F++   +DL+   +L+SP F  S+  ++    +  + +  + + Q+  
Sbjct: 549  TPVGYDLQALLEFLVYPSNDLALATLLRSPAFGLSDAQLY---QRAQQGKGWWSHRQERP 605

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFL 533
                  F   IK +  L+    F SP         A        S    +  +      L
Sbjct: 606  ---DPAFAAAIKILEGLLRSRFFESPLRLVQQFDRATGYSAVLASLPQAQRLLADWQALL 662

Query: 534  NFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             F     + +    L     +L+Q    + R      N V +MT+H +KG E PVV + D
Sbjct: 663  TFLREQPQAHDLELLLRYWKQLQQAEVVLPRPVLKAGNAVTLMTLHGSKGSEWPVVIIPD 722

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
              ++  S             + + G+ +  P  K +           +++   E  RLLY
Sbjct: 723  LTAKPRSQAETVLF------DTELGVALRQPYVKEQAAAYQFFKYRKQQAEDAETRRLLY 776

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA D L++         K +  R+  D++         ++ +   +          
Sbjct: 777  VGFTRARDLLLLTSP------KSAEARSPLDLLAPGLEQ-AAIQPLDPNSGTEIAVTATL 829

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
              +                  +           P                   G  + E 
Sbjct: 830  PTADAPLFWQSTAAIAPQYSELSVSAFADYFRCPALFHFRYTQ-------GHPGAIDGEG 882

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
              + ++    GL++H+ L++    PE                          L   +   
Sbjct: 883  AGTSDRPPQLGLLVHRALELDLRQPEA---------LKPYCAAEDQDLIPQALQLASCFA 933

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
              P+ +         EV++  +++     +++ GR D +       ++ ++KT       
Sbjct: 934  TEPVYSAVREQAQQREVTLHLELSS---GLVLKGRADLVGAD----WVLDFKTDQQP--- 983

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                P  +  QL  Y   L     N+     + ++   ++  I
Sbjct: 984  ---QPENYQLQLWAYAAAL-----NRP-QAAIAWLRHNQLDWI 1017


>gi|262182885|ref|ZP_06042306.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 841

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 112/774 (14%), Positives = 222/774 (28%), Gaps = 161/774 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+                + ++   L      +     
Sbjct: 67  GAGSGKTAVLTRRIAYLMRERGVAPWQILAITFTNKAAAEMKERVGQLVGPVAERMWVST 126

Query: 66  FSL---------------LSSFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQ--D 105
           F                 L++ F        + ++T   +++         ++  +Q  +
Sbjct: 127 FHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLLTMIAKDMQLDLKKYSARVLANQISN 186

Query: 106 EFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
              ++          + T     +    +   Y+   +    +DF+DLI     +  +  
Sbjct: 187 RKNELISPEQARAEAERTKNPFEITVASVYEEYQRRLRAANSVDFDDLIGEVVRIFNQHP 246

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +   H+LIDE QDT+  Q+ ++ +L                L  VGD  Q
Sbjct: 247 ---QVVEFYRRRFKHVLIDEYQDTNHAQYALVSALVGR----GELPPDAPELCVVGDSDQ 299

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY+F GA  + +   +R   +           I L  ++RST  IL   + V +  E  
Sbjct: 300 SIYAFRGATIRNIQEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNEGR 351

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  +                     LW        +    +Q       +   +      
Sbjct: 352 REKN---------------------LW-------TAHGQGEQIVGYVADNEHDE------ 377

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR IA  I ++    T             DI V+ R    +  +  +         I  
Sbjct: 378 -ARYIASEIDSLADKGTA----------YSDIAVMYRTNNASRALEDIF----VRSGIPY 422

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                    +   I+DL+A  R + + +D +S   ++  P     +    +I        
Sbjct: 423 KVVGGTRFYERREIRDLVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLG 482

Query: 465 TVYEYIQK---------FANCGISKFQHVIKYIHELIHIAQFC--------SPHDFFTLI 507
             +    +              ++      + +  +                  +    +
Sbjct: 483 VSFGAALRDAAAGKVAGLGTRAVNAVSKFNEMMEGVRAQIPGMVNEVTGQPDLGELLNAL 542

Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-------------EQNSYSSLQE-- 549
           L A   R +  +    +    +D L+E ++                  +      L E  
Sbjct: 543 LDATGYRAELENSNDPQDGARLDNLNELVSVAREFSSEAANEMAFLGADAEEAPELSEGE 602

Query: 550 -----LISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                L + LE+           +H    V +MT+HTAKGLE PVVFL       F H  
Sbjct: 603 AAPGSLQAFLEKVSLVADADQIPDHESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMR 662

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                      E  RL YVG+TRA +QL
Sbjct: 663 SLGDP----------------------------------KELSEERRLAYVGITRAREQL 688

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            + +    S+            + +   +    ++ +  +S++        +  
Sbjct: 689 YLTRAILRSSWGNPVTNPASRFLAEVPEDLIDWRREEPDSSLSSAWGGDDSYQY 742


>gi|298507445|gb|ADI86168.1| ATP-dependent DNA helicase UvrD/REP [Geobacter sulfurreducens
           KN400]
          Length = 739

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 107/640 (16%), Positives = 199/640 (31%), Gaps = 120/640 (18%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                    ++R    +   +   +  +   + A Y+E  KK   LDF DLI+ T  L +
Sbjct: 136 SLASAIDDCKNRGLAPEDLPADTFTGEVVGRVYAAYQERLKKCNALDFGDLIMLTVRLFE 195

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           +  V   +  +   +   IL+DE QDT+ IQ+ ++R L  +           R L  VGD
Sbjct: 196 EHPV---VLERYRDQWRWILVDEYQDTNPIQYRLVRLLAGE----------HRNLCVVGD 242

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GA+ + +L  ++             + I+L  ++RST +IL     V +  
Sbjct: 243 DDQSIYRWRGADIRNILDFEKDFP--------GVTTIKLEQNYRSTRNILAAAGAVVARN 294

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
              +  +  S                                     +    D   +   
Sbjct: 295 RGRKAKTLWSENPP----------------------------GDPIVYRRLADERDE--- 323

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I   +                +D+ V  R    + ++            
Sbjct: 324 ----ARFVCREIERYVRRGGDL----------RDVAVFYRTNAQSRVVEDALVAD----G 365

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QR 460
           I           + + +KD++A  R + +  D++S   ++  P        + KI     
Sbjct: 366 IPYHMVGGMRFYERMEVKDVLAYLRVLANPADEVSLKRIINVPARGIGPGTVDKISELAV 425

Query: 461 HETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               T+ + + + A           K       +     +       +  T I+      
Sbjct: 426 RRGITILDALGEAATGGLLSSAPRGKVAAFAAVMERFFALRDQLPLAELTTRIIEESGYA 485

Query: 515 QQFISRFGNEVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHN 570
            +      +E  D    L E +      E+ +    L   + ++                
Sbjct: 486 DRLRQERTDEAADRLANLQELVAAMEEFERTSDERGLAPFLEQVALVSDLE--RSGTGRE 543

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
              +MT+H AKGLE P+VF++    ++F H                              
Sbjct: 544 SATLMTLHAAKGLEFPMVFMIGMEEKLFPHVRSLDDP----------------------- 580

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYD 687
                         EE  RL YVGMTRA ++L +           ++ +    +   +  
Sbjct: 581 -----------EAMEEERRLCYVGMTRARERLCLTNARRRRIFGQDQVNMPSRFIADIPR 629

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
           +  + E   +     S+  D          H   + LE E
Sbjct: 630 NLLDLEDEWQQPALGSVAPDTAGRGREPARHNLASILETE 669


>gi|257898302|ref|ZP_05677955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15]
 gi|257836214|gb|EEV61288.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15]
          Length = 748

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 122/802 (15%), Positives = 252/802 (31%), Gaps = 138/802 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 34  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 93

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 94  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 153

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +A    A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 154 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 211

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 212 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 260

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 261 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 312

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 313 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 337

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 338 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 384

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    + + +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 385 GHKFYDRKEIKDILAYLNVLANPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 444

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  +  + +  +    +L      +    +  
Sbjct: 445 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 504

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 505 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 564

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 565 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 610

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 611 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 650

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++ ++ T              ++    T +   ++          P       K  
Sbjct: 651 ELLEIEGMRPTPKKTPVFAKKTAAYSYKQPETAVVSSKSATGGEKNSWKPGDKVKHKKWG 710

Query: 751 INEPYILNPSTIDTKGKTNLES 772
           +     ++ ++ D +      S
Sbjct: 711 LGTVVRVSGTSKDLELDVAFPS 732


>gi|167039196|ref|YP_001662181.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514]
 gi|300913209|ref|ZP_07130526.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561]
 gi|307723777|ref|YP_003903528.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513]
 gi|166853436|gb|ABY91845.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514]
 gi|300889894|gb|EFK85039.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561]
 gi|307580838|gb|ADN54237.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513]
          Length = 711

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/555 (18%), Positives = 187/555 (33%), Gaps = 112/555 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+D+II T +L K+      +     ++  +I++DE QDT+  Q+  +  L + +
Sbjct: 183 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNTPQYHFVNMLAQKY 239

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     R L  VGD+ QSIY + GA+ K +L  ++              +I+L  +
Sbjct: 240 ----------RNLCVVGDDDQSIYGWRGADVKNILNFEKDYP--------DAKVIKLEQN 281

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   + V       +  +                     LW        +   
Sbjct: 282 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEQ 313

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++       +   +       A  +   I ++   +             +D  +L R  
Sbjct: 314 GEKIILCELDNEREE-------AEFVIQEIISLKERENR---------SFRDFAILYRTN 357

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +              +I           D   IKD++A  R +++  DD+SF  ++  
Sbjct: 358 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 413

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500
           P        I  +      +  +++  I        +K       ++I ELI      + 
Sbjct: 414 PKRGIGAATIEALEATALEKDTSLFFAIDDAKVSQRAKNSLLEFKEFILELIDKKDTMTV 473

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556
            +    IL      ++       +     + L EFLN     E+ +   SL+  ++ +  
Sbjct: 474 SEVINYILEETGYVEELEKEESEQAEGRIENLKEFLNAAYEFEESSEDKSLEAFLAGITL 533

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                          V +MT+H+AKGLE PVVF+V     +F                  
Sbjct: 534 VSDIDL--AGEIGESVVLMTLHSAKGLEFPVVFMVGMEEGIFPS---------------- 575

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   +   EE  RL YVG+TR+ ++L +      +   KS
Sbjct: 576 ------------------FKSFTDEYELEEERRLCYVGITRSKEKLYMTYARRRNLYGKS 617

Query: 677 NQRTWYDMVYDSFHN 691
              ++   + +    
Sbjct: 618 QYSSYSRFISEIPER 632


>gi|319408809|emb|CBI82466.1| DNA helicase II [Bartonella schoenbuchensis R1]
          Length = 805

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 187/550 (34%), Gaps = 108/550 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + L   Y++  K     DF DL++++ ++ +       I ++   +  +IL+DE QDT
Sbjct: 209 MGRELYHSYQDRLKSLNACDFGDLLLHSINIFQHNPD---ILHEYHAKFRYILVDEYQDT 265

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+  +R L +              L  VGD+ QSIY + GA+   +LR ++      
Sbjct: 266 NTAQYLWLRLLAQQST------RQQVNLCCVGDDDQSIYGWRGAKVDNILRFEKDFP--- 316

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   II L  ++RST+ IL       S  +   G +  S                 
Sbjct: 317 -----PAKIIRLERNYRSTSHILKTASHFISHNQGRLGKTLFS----------------- 354

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                      +    ++    + +DS  +       AR IA  I     +         
Sbjct: 355 ---------DKTNNEEKKVKIHAAWDSEEE-------ARAIAKEIEQAQQSGHFL----- 393

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 D+ +LVR              L     ++          + + I+D +A  R +
Sbjct: 394 -----NDMAILVRASFQMRAFEERFITL----GLNYRVVGGPRFYERMEIRDALAYLRVV 444

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKF 481
               DDL+F  ++ +P     E  +  +    R     ++          +      +  
Sbjct: 445 AQPSDDLAFERIINTPKRGLGETTLRHLHNNARARAIPLFSAAIEIIETDELKPKARNAL 504

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           +++I+  H   +++      +   +IL      + +      E    L+         EQ
Sbjct: 505 RNIIEDFHRWQNLSPRTPLTELTEMILNDSGYMEMWQEDRSPEAPTRLENLKEMIRSMEQ 564

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 + L S LE     +   H+ N + V IMT+H+AKGLE   VFL      +F ++
Sbjct: 565 -----FENLHSFLEHVSLVMDVEHNENMDAVNIMTLHSAKGLEFKTVFLPGWEEGLFPNQ 619

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  ++  EE  RL YVG+TRA   
Sbjct: 620 RSLD--------------------------------EGGRAGLEEERRLAYVGLTRAQQN 647

Query: 662 LIICKHSNTS 671
           L I   SN  
Sbjct: 648 LHIWFVSNRR 657


>gi|49474442|ref|YP_032484.1| DNA helicase II [Bartonella quintana str. Toulouse]
 gi|49239946|emb|CAF26350.1| DNA helicase II [Bartonella quintana str. Toulouse]
          Length = 776

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 104/549 (18%), Positives = 180/549 (32%), Gaps = 107/549 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + L   Y+   K     DF DL+++   + +       I +    +  +IL+DE QDT
Sbjct: 209 MGRKLYCSYQNRLKSLNACDFGDLLLHCISIFQNNPD---ILHDYHSKFRYILVDEYQDT 265

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+  +R L +              L  VGD+ QSIY + GA+   +LR ++      
Sbjct: 266 NTAQYLWLRLLAQQP------KGQHVNLCCVGDDDQSIYGWRGAKVDNILRFEKDFP--- 316

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   II L  ++RST+ IL     + S  +   G    S                 
Sbjct: 317 -----PAKIIRLERNYRSTSHILKTASHLISHNQGRLGKVLFSDQI-------------- 357

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                           ++    + +DS          AR I   I          ++   
Sbjct: 358 ------------NIEEEKVKIHAAWDS-------QKEARAIGEEIEQAQQAGHSLNH--- 395

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  I +LVR              L     ++          + + I+D +A  R +
Sbjct: 396 -------IAILVRASFQMREFEDWFVTL----GLNYRVIGGPRFYERMEIRDALAYLRVV 444

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-----IQKFANCGISKFQ 482
           +   DDL+F  ++ +P     +  +  +    R     ++         +      +  +
Sbjct: 445 VQPADDLAFERIINTPKRGLGDATLRTLYESARARDIPLFTAAEIIKTDELKPKARTALR 504

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            +++  H   ++ Q+    +   ++L        +      E    L+         EQ 
Sbjct: 505 SIVENFHRWQNMLQYTPHRELAEIVLDDSGYTTMWQEDRSPEAPTRLENLKEMIRSMEQ- 563

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                + L S LE     +   ++ N + V IMT+H+AKGLE   VFL      +F H+ 
Sbjct: 564 ----FESLHSFLEHVALIMDAENNENTDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQR 619

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                 +S  EE  RL YVG+TRA   L
Sbjct: 620 SLD--------------------------------ENGRSGLEEERRLAYVGLTRAKKYL 647

Query: 663 IICKHSNTS 671
            I   SN  
Sbjct: 648 HIWFVSNRR 656


>gi|39998500|ref|NP_954451.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens PCA]
 gi|39985447|gb|AAR36801.1| ATP-dependent DNA helicase PcrA, putative [Geobacter sulfurreducens
           PCA]
          Length = 739

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 108/640 (16%), Positives = 199/640 (31%), Gaps = 120/640 (18%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                    ++R    +   +   +  +   + A Y+E  KK   LDF DLI+ T  L +
Sbjct: 136 SLASAIDDCKNRGLAPEDLPADTFTGEVVGRVYAAYQERLKKCNALDFGDLIMLTVRLFE 195

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           +  V   +  +   +   IL+DE QDT+ IQ+ ++R L  +           R L  VGD
Sbjct: 196 EHPV---VLERYRDQWRWILVDEYQDTNPIQYRLVRLLAGE----------HRNLCVVGD 242

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GA+ + +L  ++             + I+L  ++RST +IL     V +  
Sbjct: 243 DDQSIYRWRGADIRNILDFEKDFP--------GVTTIKLEQNYRSTRNILAAAGAVVARN 294

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
              +  +  S                                     +    D   +   
Sbjct: 295 RGRKAKTLWSENPP----------------------------GDPIVYRRLADERDE--- 323

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I   +                +D+ V  R    + ++            
Sbjct: 324 ----ARFVCREIERYVRRGGDL----------RDVAVFYRTNAQSRVVEDALVAD----G 365

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QR 460
           I           + + +KD++A  R + +  D++S   ++  P        + KI     
Sbjct: 366 IPYHMVGGMRFYERMEVKDVLAYLRVLANPADEVSLKRIINVPARGIGPGTVDKISELAV 425

Query: 461 HETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               TV + + + A           K       +     +       +  T I+      
Sbjct: 426 RRGITVLDALGEAATGGLLSSAPRGKVAAFAAVMERFFALRDQLPLAELTTRIIEESGYA 485

Query: 515 QQFISRFGNEVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHN 570
            +      +E  D    L E +      E+ +    L   + ++                
Sbjct: 486 DRLRQERTDEAADRLANLQELVAAMEEFERTSDERGLAPFLEQVALVSDLE--RSGTGRE 543

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
              +MT+H AKGLE P+VF++    ++F H                              
Sbjct: 544 SATLMTLHAAKGLEFPMVFMIGMEEKLFPHVRSLDDP----------------------- 580

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYD 687
                         EE  RL YVGMTRA ++L +           ++ +    +   +  
Sbjct: 581 -----------EAMEEERRLCYVGMTRARERLCLTNARRRRIFGQDQVNMPSRFIADIPR 629

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
           +  + E   +     S+  D          H   + LE E
Sbjct: 630 NLLDLEDEWQQPALGSVAPDTAGRGREPARHNLASILETE 669


>gi|294614140|ref|ZP_06694061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636]
 gi|291592990|gb|EFF24578.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636]
          Length = 745

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 109/663 (16%), Positives = 211/663 (31%), Gaps = 121/663 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A    A Y++  + N  +DF+DLI+NT  L ++   S         + ++I +DE QD
Sbjct: 170 EIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS---LTYYQNKFHYIHVDEYQD 226

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++  L   F          R L  VGD  QSIY + GA+ + +L  ++     
Sbjct: 227 TNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYGWRGADMQNILDFEKDYP-- 274

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I L  ++RST +IL+  ++V     N +  +                   
Sbjct: 275 ------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN------------------- 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW              + ++    +   +        R I   +   I  +       
Sbjct: 310 --LW-------TENKEGNKITYYRADNERDET-------RFIVDRMQEEIRNNHR----- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  +L R    + ++            I           D   IKD++A    
Sbjct: 349 ----NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVGGHKFYDRKEIKDILAYLNV 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQKFANCGI-----SKF 481
           + + +D ++F  ++ SP        I K+ +     E  + E  Q      I      + 
Sbjct: 401 LANPQDSINFERIVNSPKRGIGPGSIEKLRSFASLHEWPLLEAAQNVDLANIGGKAGQQL 460

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT-- 536
               + I E+  +  + +  +    +L      +    +   E     + L+EFL  T  
Sbjct: 461 GAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNTLEAQARIENLEEFLTVTQE 520

Query: 537 --LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
              + EQ +         +L     +    +       + ++V +MT+H AKGLE PVVF
Sbjct: 521 FDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDASQVTLMTLHAAKGLEFPVVF 580

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF                                                   
Sbjct: 581 LIGLEEGVFPLSRALMEESELEEERRL--------------------------------- 607

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             YVG+TRA + L +    + +   ++        V +       ++ ++ T        
Sbjct: 608 -AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQELLEIEGMRPTPKKTPVFA 666

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                 ++    T +   ++          P       K  +     ++ ++ D +    
Sbjct: 667 KKTAAYSYKQPETAVVSSKSATGGEKNSWKPGDKVKHKKWGLGTVVRVSGTSKDLELDVA 726

Query: 770 LES 772
             S
Sbjct: 727 FPS 729


>gi|259501107|ref|ZP_05744009.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335]
 gi|315653835|ref|ZP_07906751.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195]
 gi|259167801|gb|EEW52296.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335]
 gi|315488531|gb|EFU78177.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195]
          Length = 744

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 115/671 (17%), Positives = 219/671 (32%), Gaps = 131/671 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E + + L          ++ + +L         ++  +   +            
Sbjct: 68  AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 117

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 L ++   + NI +++ +     L   +  ++++ +   + +      +      
Sbjct: 118 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 173

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y++  K +C++DF+DLI+ T  L K       + +    +  +IL+DE QD
Sbjct: 174 ---AIVYREYQKNLKHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+   L +            + +  VGD  QSIY + GA  + +L  ++  +  
Sbjct: 228 TNQAQYELCHLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 277

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I+L  ++RST  IL   + V    +N +                      
Sbjct: 278 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 312

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +     + ++        +       A  I   I+  I          
Sbjct: 313 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  I            I           D   IKD+MA  R 
Sbjct: 349 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 403

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481
           + +  D +S   ++ +P        I  F+     +    +             K     
Sbjct: 404 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 463

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +   + + E+I  A+  +  +    IL          +    E     + LDEFL  T +
Sbjct: 464 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 523

Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +   + +    + +   L +    + +     N ++V +MT+H AKGLE PVVFLV   
Sbjct: 524 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 583

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                           S  EE  RL YVG
Sbjct: 584 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 609

Query: 655 MTRASDQLIIC 665
           +TRA  QL + 
Sbjct: 610 ITRAKKQLYLT 620


>gi|320529153|ref|ZP_08030245.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399]
 gi|320138783|gb|EFW30673.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399]
          Length = 1281

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 148/1053 (14%), Positives = 315/1053 (29%), Gaps = 157/1053 (14%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVS--DINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            + F  +  ++ + + K L                 + +  T   +    A+  + A   +
Sbjct: 257  DAFRAAAEKTRDAVLKHLGIYEALAGEVEAFAHAQNTAAWTKFVSAAAAAKKERGAIPRK 316

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             ++     +++ F         N +T+ +      L ++L ++ ++     +R N     
Sbjct: 317  DLDAYAPEIAAEF---------NRLTKTVFAAWDKLLKRLPETAEDLCAAENRANA---- 363

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV----------SAWIR 170
                    L    +A  +  K    +L F DL      LL                  I 
Sbjct: 364  -DIRRFAQLTIEFHAAMQREKIARGILYFSDLEHEALHLLCAHPEQLQADPTMVDPTDIA 422

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             ++    + I++DE QDT+ +Q  ++R +                 F VGD KQSIY F 
Sbjct: 423  VELQGHFDAIMVDEYQDTNGLQEGILRQIA-----------RGDNRFIVGDVKQSIYRFR 471

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
             A+P    +  R  +  A     + +++ +  +FRS A++L  ++ +FS       +   
Sbjct: 472  LADPVLFQQTYRAYRSGA----AEGTLVTMSENFRSRAEVLEPINYIFSQIMTETAVDIA 527

Query: 291  STTTIRHRSSR--IGQVGTVQLWEQ----VVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                 R    R      G   L       ++    +    ++E      +S  +     +
Sbjct: 528  YDEKARLNPGRKFDALPGGKSLAAPMELNLLRVDYTDRADEEEKEEGEEESGEELGKFEV 587

Query: 345  LARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A  IA  I+ +I    I  +G     +   DI++L+R  K    +         D  I 
Sbjct: 588  EAHFIARRIAELISEKYIVHDGGGGHPLTYSDIVILLRAAKGRAGV---LIDALRDAGIP 644

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
               ++     +   I+ ++AL   + +   D +   +L SP+     +++ ++       
Sbjct: 645  AYADEPGGYFESGEIRMMLALLAALDNARQDTALAAVLASPMIGLRMEELAELRAHTPRG 704

Query: 464  ETV----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-I 518
                    +   +     +++ +H ++ I      A   S  +   ++            
Sbjct: 705  SIYDMLTADGGDELPAELMTRARHALERIRAWRRYALVHSVPELLWMLYRDTGYYDYVGT 764

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVR 573
               G      L   ++     E+ +   L   +  ++         +  R    + N VR
Sbjct: 765  LPGGVLRQANLRMLIDRASEFERTNERGLFRFLRYIDALRSRSTDLSAARTLGESENVVR 824

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW--IPQSKSRNNI 631
            IMT+H +KGLE PVVFL + G           +           +       + +     
Sbjct: 825  IMTIHKSKGLEFPVVFLSNIGGSFNEKDTGGDLLYHAREGIGLRLFENTEAGRQRYDTLS 884

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-KKSNQRTWYDMVYDSFH 690
            +  +   + + T+ E  R+LYV MTRA ++LI+    N +   K   ++     +  +  
Sbjct: 885  LRRVKDVIARETKAEEMRILYVAMTRAQEKLILTGTLNVTRSGKDKLEQLHEKCLTYAQE 944

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ-----LMDEQKIPKKLFS 745
                +    +    +  +WIA     H       + +  I             +      
Sbjct: 945  TGAVLPDASILGGKSYLDWIALALMRHPDGAQLFDADAEIAPYLPVSPAARFDVHLLDED 1004

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN--------RGL-IIHK-------- 788
                        +P     +    L       +           RG   IH         
Sbjct: 1005 ARAARRRAADEDDPILAAVRADDPLPEGGRAEEVARILDWHYDARGTEHIHAKTSVTELK 1064

Query: 789  -----LLQVIFTLPEHKRKNFITSYCT-----------------------------KNAK 814
                 L++ +         +                                    +   
Sbjct: 1065 RRRAELIEEMPPPFAPALGDAGAETAEAWETPRFLRSDACAYLTPMERGIAMHTFMQQLD 1124

Query: 815  LWPAKEYKNLLLSITRLL----------ENPMMTTAM-------------SCDSYSEVSV 851
            L  A +   ++     LL          E+  +                 +   Y E+  
Sbjct: 1125 LTDAADIDAIVRQANTLLEKGILTEAERESIRIEHVWKFAASRLGRRMRAAKAVYRELPF 1184

Query: 852  SGKINC---------PKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
               +            +  I + G ID +         + +YKT   +          + 
Sbjct: 1185 GRLLPAQKYYAEAQDAEDKIFLQGIIDVLFEEDDGGYVLLDYKTDRKI--SAAAARARYQ 1242

Query: 902  AQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVF 933
             Q+ +Y + ++     + +    L  +   +  
Sbjct: 1243 FQIDLYGEAVETIL-GRPVKERWLFLLDTGQEV 1274


>gi|88802827|ref|ZP_01118354.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P]
 gi|88781685|gb|EAR12863.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P]
          Length = 773

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/640 (15%), Positives = 204/640 (31%), Gaps = 121/640 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEA 140
           K +   +   K   +  ++   ++  + +R  FN+  M ++ + +       +   Y   
Sbjct: 126 KEMGLDKERYKPKQILGRISSFKNSLVTVRAYFNSADMQEADMHASRPKVGEIYKEYVAR 185

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
             K   +DF+DL++ TN+LL +   +     K      +I++DE QDT+  Q+ ++R+L 
Sbjct: 186 CFKAGAMDFDDLLLRTNELLARFPET---LAKYQNRFRYIMVDEYQDTNHSQYIIVRALA 242

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           + F            +  VGD+ QSIYSF GA  + +L  ++                +L
Sbjct: 243 DKF----------GNICVVGDDSQSIYSFRGANIQNILNFQKDYP--------DVKTFKL 284

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST++I+   + + +  +                          ++W       ++
Sbjct: 285 EQNYRSTSNIVNAANSIIAKNKTKLDK---------------------EVW------TEN 317

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                     +  D            R +A +I         + N     +      VL 
Sbjct: 318 GAGEAINVMRTISDGEEG--------RFVAQSI---------WENQMNNQLSLDSFCVLY 360

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +  I    R       I               IKD+++  R +++  D+ +   +
Sbjct: 361 RTNSQSRAIEDALR----KKGIDYKIYGGISFYQRKEIKDILSYLRILINPNDEEALKRI 416

Query: 441 LKSPLFNFSEDDIFKICTQRHE--------TETVYEYIQKFANCGISKFQHVIKYIHELI 492
           +  P        I K+    +          + + +   K      +K Q+ +  +  L 
Sbjct: 417 INYPARGIGATTIDKLTIAANHYKKSIFDVLKYIDKIDLKINAGTKNKLQNFMNMMLRLQ 476

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN-----EQNSY 544
             +Q  +  +   +++   K  +        E    ++ + E LN          EQ   
Sbjct: 477 IESQTKNAFEIAEVVVKEAKFIKDLEKDGTPEAVSKVENIQELLNGIKDFITDKIEQGED 536

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +SL   + ++             +   V +MT+H +KGLE   V++V     +F      
Sbjct: 537 ASLTSFLEDVAL-ATDFDSEKKDDEPTVSLMTIHQSKGLEYLYVYVVGLEENLFPS---- 591

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                          +    +S  EE  RL YV +TRA     +
Sbjct: 592 ------------------------------AMSMSTRSELEEERRLFYVALTRAEKAAFL 621

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
                     K         + +           K     
Sbjct: 622 TYAQTRYRWGKLVDAEPSRFLEEIDDQYLHYLTPKAPEPA 661


>gi|167038090|ref|YP_001665668.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116497|ref|YP_004186656.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856924|gb|ABY95332.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929588|gb|ADV80273.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 711

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 103/555 (18%), Positives = 187/555 (33%), Gaps = 112/555 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+D+II T +L K+      +     ++  +I++DE QDT+  Q+  +  L + +
Sbjct: 183 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNTPQYHFVNMLAQKY 239

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     R L  VGD+ QSIY + GA+ K +L  ++              +I+L  +
Sbjct: 240 ----------RNLCVVGDDDQSIYGWRGADVKNILNFEKDYP--------DAKVIKLEQN 281

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   + V       +  +                     LW        +   
Sbjct: 282 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEQ 313

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++       +   +       A  +   I ++   +             +D  +L R  
Sbjct: 314 GEKIILCELDNEREE-------AEFVIQEIISLKERENR---------SFRDFAILYRTN 357

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +              +I           D   IKD++A  R +++  DD+SF  ++  
Sbjct: 358 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 413

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500
           P        I  +      +  +++  I        +K       ++I ELI      + 
Sbjct: 414 PKRGIGAATIEALEATALEKDTSLFFAIDDAKVSQRAKNSLLEFKEFILELIDKKDTMTV 473

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556
            +    IL      ++       +     + L EFLN     E+ +   SL+  ++ +  
Sbjct: 474 SEVINYILEETGYVEELEKEESEQAEGRIENLKEFLNAAYEFEESSEDKSLEAFLAGITL 533

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                          V +MT+H+AKGLE PVVF+V     VF                  
Sbjct: 534 VSDIDL--AGEIGESVVLMTLHSAKGLEFPVVFMVGMEEGVFPS---------------- 575

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   +   EE  RL YVG+TR+ ++L +      +   KS
Sbjct: 576 ------------------FKSFTDEYELEEERRLCYVGITRSKEKLYMTYARRRNLYGKS 617

Query: 677 NQRTWYDMVYDSFHN 691
              ++   + +    
Sbjct: 618 QYSSYSRFISEIPER 632


>gi|289435096|ref|YP_003464968.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171340|emb|CBH27882.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 731

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/567 (17%), Positives = 186/567 (32%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 185 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF 241

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 242 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 283

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 284 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 315

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +   +             D  +L R  
Sbjct: 316 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNNSSRP---------LSDFAILYRTN 359

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 360 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 415

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    +     +  F
Sbjct: 416 PKRGVGPGTLEKLNNVATAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDF 475

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQN-SYSSLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+     +L   +++
Sbjct: 476 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENEDKTLIAFLTD 535

Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K    +   +  V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 536 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 585

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 586 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 621

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 622 LYGRPSSNQESRFIGEIPRDLLELANE 648


>gi|146318385|ref|YP_001198097.1| superfamily I DNA/RNA helicase [Streptococcus suis 05ZYH33]
 gi|146320577|ref|YP_001200288.1| superfamily I DNA/RNA helicase [Streptococcus suis 98HAH33]
 gi|253751530|ref|YP_003024671.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|253753431|ref|YP_003026572.1| ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|253755741|ref|YP_003028881.1| ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|145689191|gb|ABP89697.1| Superfamily I DNA and RNA helicase [Streptococcus suis 05ZYH33]
 gi|145691383|gb|ABP91888.1| Superfamily I DNA and RNA helicase [Streptococcus suis 98HAH33]
 gi|251815819|emb|CAZ51427.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84]
 gi|251818205|emb|CAZ56006.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407]
 gi|251819677|emb|CAR45461.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7]
 gi|319757962|gb|ADV69904.1| superfamily I DNA/RNA helicase [Streptococcus suis JS14]
          Length = 759

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/589 (15%), Positives = 183/589 (31%), Gaps = 118/589 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPE---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPES 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST ++L   ++V     N +                      
Sbjct: 273 --------KVVLLEENYRSTKNVLQAANEVIENNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW                ++    D   +       A  +A  I  +           
Sbjct: 306 --LW-------TQNAQGDLITYYRARDENDE-------AIFVAGQIDQLHREGKA----- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 345 -----YKDFTVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNI 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + K+       + ++ E  Q               
Sbjct: 396 IANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
             +   ++ L +     +       +L          ++   E     + + EFL+ T  
Sbjct: 456 FDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQEFLSVTKN 515

Query: 539 NE----QNSYSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            +    +   + L +L    L+              +EV +MT+H AKGLE PVVFL+  
Sbjct: 516 FDEKDVEEEETGLDKLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLIGM 575

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF      +                                              YV
Sbjct: 576 EENVFPLSRAAEEEDELEEERRL----------------------------------AYV 601

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           G+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 602 GITRAEQTLYLTNANSRLLFGRTNYNQPSRFIREISSDLLDYQGLARPA 650


>gi|154495304|ref|ZP_02034309.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC
           43184]
 gi|154085228|gb|EDN84273.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC
           43184]
          Length = 770

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 106/668 (15%), Positives = 203/668 (30%), Gaps = 134/668 (20%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFEDLII 154
            Q      ++   TYK ++     +         L + +   Y+   ++   +DF+DL++
Sbjct: 140 VQGRISNAKNALITYKAYEQNKELVQHDIDSKVPLLREIYKRYQNRCQQAGAMDFDDLLL 199

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            TN L +       +  K       +L+DE QDT+  Q  +++ L E            R
Sbjct: 200 QTNILFRDHPD---VLEKYRSFFQFVLVDEYQDTNFAQHLIVQRLCE----------VHR 246

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIYSF GA    +L+ K               I +L  ++RST +I+   
Sbjct: 247 RICVVGDDAQSIYSFRGANIDNILQFKNQYP--------GCRIFKLERNYRSTQNIVNAA 298

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +          +  S            +   V +        +               
Sbjct: 299 NSLIHKNTKQIPKTVYSE---------KEEGSKVSICSSYSDYEEGYA------------ 337

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                         +A  I++M          + +     D  +L R    + ++    R
Sbjct: 338 --------------VAGKINDM----------RMQNYDYADFAILYRTNAQSRILEEALR 373

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  I               +KD+++  R I++  D+ +F  ++  P     +  + 
Sbjct: 374 ----KRGIPYKIYGGLSFYQRKEVKDVISYLRLIVNPHDEEAFKRVINYPARGIGDTTLN 429

Query: 455 KI-CTQRHETETVYEYIQK-------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
           K+         +++  +           N    K     + I   I      S  +    
Sbjct: 430 KLVVAATDHNVSLWTVLNDPIGYALPVNNGTAKKLSDFRELISGFIERNVKLSAEEIAAA 489

Query: 507 ILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISELEQY 557
           ++               E     + L E L            E   + SL + +SE+   
Sbjct: 490 VVKESGIVSTLFQDRSVEGISKQENLQELLKGIAEFCEIRREEGTEHVSLADFLSEVSLL 549

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                       N+V +MTVH AKGLE   VF+V     +F     K             
Sbjct: 550 TDQD-NDKEEQANKVTMMTVHAAKGLEFRNVFVVGLEEDLFPSAMSKDNP---------- 598

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                                      EE  RL YV +TRA +  ++    +     +S 
Sbjct: 599 ------------------------RAVEEERRLFYVAITRAEENCVLTHARSRYRNGQST 634

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
             +    +     + +        +++  +  +A   S+   +   +E E  +  +    
Sbjct: 635 MCSPSRFL----KDIDPKYIYTSADAVTTNGLLATRRSSVFQQPKAMEGEAYVSPVAQAV 690

Query: 738 KIPKKLFS 745
               +L  
Sbjct: 691 GRQARLTR 698


>gi|295426521|ref|ZP_06819171.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM
           11664]
 gi|295063889|gb|EFG54847.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM
           11664]
          Length = 749

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/582 (17%), Positives = 195/582 (33%), Gaps = 114/582 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y++  +++ ++DF+DLI+ T  L KK        +    +  +IL+DE QD
Sbjct: 169 KMVAQIYQEYQKRLRRDQIMDFDDLIMQTLVLFKKD---KETLHYYQNKFRYILVDEYQD 225

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+  +L   +          + +  VGD  QSIY + GA  + ++  +   +  
Sbjct: 226 TNQAQYELTHALAAQY----------KNICVVGDADQSIYGWRGANMENIMNFESDYKND 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     ++L  ++RST  IL+  + V    +N +  +                   
Sbjct: 276 ------GVRTVKLEQNYRSTGHILSAANSVIKNNQNRKSKN------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW         +   ++ ++        +       A  I   I   +          
Sbjct: 311 --LW-------TDRGEGEKVTYYKAQSGDDE-------AHYIISKIQEEVKDQKR----- 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            +           D   IKD+M+  + 
Sbjct: 350 ----SYKDFAVLYRTNAQSRTVEEAF----VKSNVPYQIVGGHKFYDRKEIKDVMSYLKL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKF 481
           + +  D +S   ++ +P        + K+            + + +      +N    + 
Sbjct: 402 VSNPADTMSLNRIINTPKRGIGAATVDKLLAFANENNLNALQAMDQVGMSTISNRAAQEL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
                 +H+ I+ A+  S       IL          +    +     + LDEFL+ T R
Sbjct: 462 SDFAAKLHDAINFAKDHSVTGLTEKILDDFDYTSALKAEHNIDADTRLENLDEFLSVTKR 521

Query: 539 NE---QNSYSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +   +       +L   L +    + +     + N+V +MT+H AKGLE PVVFL+   
Sbjct: 522 FDDHYEAEDDDSDQLSDFLAEVSLLSDQDDLDDDDNQVALMTLHAAKGLEFPVVFLIGME 581

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                        + +S  EE  RL YVG
Sbjct: 582 DGLFPLS----------------------------------RSMMDESQLEEERRLAYVG 607

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
           +TRA  +L +    +     +         + +    D  V+
Sbjct: 608 ITRAKQELYLTNAYSRMMYGRIQNNPPSRFLAEIDAKDLNVE 649


>gi|312199973|ref|YP_004020034.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c]
 gi|311231309|gb|ADP84164.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c]
          Length = 834

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/681 (14%), Positives = 200/681 (29%), Gaps = 122/681 (17%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
              +   +++    ++  ++  +S        + A Y+   ++   LDF+DLI+ T +LL
Sbjct: 196 LAAQISTLKNELVDHETAQAKASSHPERTVAEVYALYQRRLREANALDFDDLIMTTVNLL 255

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH---------- 210
           +       +     +   H+L+DE QDT+  Q+ +IR L                     
Sbjct: 256 Q---AFPDVAEHYHRRFRHVLVDEYQDTNHAQYVLIRELVGGGGSTAGRAPGRLLAAGPA 312

Query: 211 ----SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                 P  L  VGD  QSIY+F GA+ + ++  +                + L  ++RS
Sbjct: 313 DPGLPGPAELCVVGDADQSIYAFRGADIRNIVEFEEDFP--------SAKTVLLEQNYRS 364

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  IL+  + V +     +     S                               + ++
Sbjct: 365 TQTILSAANAVIARNTQRKPKRLWS----------------------------DAGDGEK 396

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                  +   +       A  +A  +  +            ++ +  D+ V  R    +
Sbjct: 397 IVGFVADNEHDE-------AAFVAEEVDRLSDE---------KLARYADVAVFYRTNAQS 440

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            +   +         +           +   I+DL+A  R + +  D ++   +L +P  
Sbjct: 441 RVFEEIF----IRVGLPYKVVGGVRFYERKEIRDLLAYLRVLANPSDTVNLRRILNTPRR 496

Query: 447 NFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
              +     +               +  + +   A       +     + EL   A    
Sbjct: 497 GIGDRAEAMLAAFAERERIGFADTLSRVDDVPGLATRSAKAIREFATLLAELRETA-EGD 555

Query: 500 PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELE 555
           P +    +L       + ++    E    ++ L E +       E+    +L   + ++ 
Sbjct: 556 PVETIEAVLERTGYLSELVAEDTIESQGRVENLQELVEVVREYTERFPDGTLAGFLEQVS 615

Query: 556 QYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 +       +  V +MT+H+AKGLE PVVFL      +F H       I      
Sbjct: 616 LVADADQIPSDDGSDGVVTLMTLHSAKGLEFPVVFLTGLEDGIFPHMRTLGDPI------ 669

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                         EE  RL YVG+TRA  +L + +    S   
Sbjct: 670 ----------------------------QMEEERRLAYVGVTRARQRLYLTRSVVRSAWG 701

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           +         V +   +    +++    +           S                   
Sbjct: 702 QPAYNPPSRFVTEIPEHLLDWRRLAPAPAGPGPSGSGGFGSGGFGSGGFGSGAGRGGTAP 761

Query: 735 DEQKIPKKLFSPIKNDINEPY 755
                 +   S        P 
Sbjct: 762 AGSPFGQGRASSRPASRPIPA 782


>gi|302190445|ref|ZP_07266699.1| superfamily I DNA/RNA helicase [Lactobacillus iners AB-1]
          Length = 742

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 121/690 (17%), Positives = 218/690 (31%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ + L  +         
Sbjct: 30  GAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLDSDADSIWMST 89

Query: 66  FSLLSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L +         N    +  ++   +K  LK+   +  K   +     +  +
Sbjct: 90  FHALCVRILRRYAEKIGYANNFSIADTAEQLTLIKRILKELNIDSKKFDPKSLVNAISNA 149

Query: 123 TLASLTL--------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L                   +   Y++  K +C++DF+DLI+ T  L K       
Sbjct: 150 KNDLLDPEEYAKQVSNEYEKKIAIVYREYQKNLKHDCIMDFDDLIMQTLVLFKSEPE--- 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           + +    +  +IL+DE QDT+  Q+E+   L +            + +  VGD  QSIY 
Sbjct: 207 VLHYYQNKFWYILVDEYQDTNQAQYELCHLLAQQ----------HKNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++  +          + I+L  ++RST  IL   + V    +N +   
Sbjct: 257 WRGANMQNILNFEQDYRND------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     + ++        +       A  
Sbjct: 311 ---------------------LW-------TNSGEGSKVNYYRASTGNDE-------AIF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I+  I              +  D  +L R    +  I            I      
Sbjct: 336 IIGKINKEIKE---------NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETV 466
                D   IKD+MA  R + +  D +S   ++ +P        I  F+     +    +
Sbjct: 383 GHKFYDRKEIKDIMAYLRLVANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTAL 442

Query: 467 YEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                        K     +   + + E+I  A+  +  +    IL          +   
Sbjct: 443 EALQSLELAPISGKLFNIMKDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHT 502

Query: 523 NEVI---DVLDEFLNFTLRNE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIM 575
            E     + LDEFL  T + +   + +    + +   L +    + +     N ++V +M
Sbjct: 503 IEADTRLENLDEFLTVTKQFDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALM 562

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE PVVFLV     +F                                     
Sbjct: 563 TLHAAKGLEFPVVFLVGMEEGIFP----------------------------------LA 588

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                 S  EE  RL YVG+TRA  QL + 
Sbjct: 589 RAQSDNSELEEERRLAYVGITRAKKQLYLT 618


>gi|227548288|ref|ZP_03978337.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079606|gb|EEI17569.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 764

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 115/789 (14%), Positives = 230/789 (29%), Gaps = 165/789 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + L    V+                + ++   L      +     
Sbjct: 29  GAGSGKTAVLTRRIAYLLQERAVAPWQILAITFTNKAAAEMKERVANLVGPEAQRMWVAT 88

Query: 66  FSLLSSFFLTQKFTPQKNIITQ--------------------EINKKSPDLKEKLKKSQD 105
           F  +    L Q+      + T                      ++ K    +       +
Sbjct: 89  FHSVCVRILRQQAQLVAGLNTNFSIYDSDDSRRLLSMIAKDHNLDLKKFSARTLANAISN 148

Query: 106 EFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
              ++       +  + T     L    + A Y+   ++   LDF+DLI     + K+  
Sbjct: 149 HKNELVGPAEAGERAERTRNPFDLTVARVYADYQRRLRQANALDFDDLIGEVVRIFKEHP 208

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +   H+L+DE QDT+  Q+E+I +L         +      L  VGD  Q
Sbjct: 209 H---VTEYYRRRFRHVLVDEYQDTNHAQYELIHTLV-------GSGPDVPELAVVGDSDQ 258

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY+F GA  + +   +R             S + L  ++RST +IL   + V +  +  
Sbjct: 259 SIYAFRGATIRNIEEFERDYP--------DASTVMLEQNYRSTQNILGAANAVIAQNQGR 310

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  +                     LW        S    ++ +     +   +      
Sbjct: 311 RPKN---------------------LW-------TSHGAGEKITGYVADNEHDE------ 336

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR IA  I  +    +          +  DI V+ R    +  +  +         I  
Sbjct: 337 -ARFIASEIDRLADQGS----------RYSDIAVMYRTNNASRALEDIF----IRSGIPY 381

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463
                    +   I+D++A  + + + +D +S   ++  P     +     +    ++  
Sbjct: 382 KVVGGTRFYERREIRDIVAYMKVLDNPDDTVSLRRIVNVPKRAIGDKAQAMVALHAQNNG 441

Query: 464 ETVYEYIQK--------FANCGISKFQHVIKYIHELIHIAQFCS--------PHDFFTLI 507
            +  + +           A    +     +  + EL       +             T I
Sbjct: 442 ISFGQALVDASAGDVGMLAARSKNAIAGFVSLLDELRTDMADMTNEVTGMPDLGMLVTRI 501

Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNS--------------------- 543
           L A   R +  +    +    +D L+E ++        +                     
Sbjct: 502 LEATGYRAELEASNDPQDGARLDNLNELVSVAREFSSEAANQVAYISQDELDSVVEEGEP 561

Query: 544 -YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              SLQ  +  +       +    ++   V +MT+HTAKGLE P VF+       F H  
Sbjct: 562 MPGSLQAFLERVSLVADADQL-PDSDQGVVTLMTLHTAKGLEFPYVFVTGWEDGQFPHVR 620

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                      E  RL YVG+TRA  +L
Sbjct: 621 ALGDP----------------------------------EELAEERRLAYVGITRARTKL 646

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            + +    S+            + +   +    ++++L  S+  D W          +  
Sbjct: 647 YLTRAVLRSSWGSPVTNPASRFLAEIPDDLIDWRRVELERSVTSDAWGTPHRRQAPAKTR 706

Query: 723 PLEREETIK 731
             +  +   
Sbjct: 707 VNKNLQLAP 715


>gi|323702799|ref|ZP_08114458.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM
           574]
 gi|323532187|gb|EGB22067.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM
           574]
          Length = 721

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 109/597 (18%), Positives = 197/597 (32%), Gaps = 120/597 (20%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
                   +++  T  +++         +A  +   Y+E   KN  LDF+DLI+ T  L 
Sbjct: 138 LLAAISGAKNKLQTPDLYERQAFDYFEQVAARVYRLYQEKLFKNNALDFDDLIMLTVKLF 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           K+      +      +  +IL+DE QDT+  Q+ ++  L E            R +  VG
Sbjct: 198 KEHPH---VLGYYQTKFKYILVDEYQDTNHAQYVLVNMLAE----------RHRNICVVG 244

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  QSIY + GA+   +L  +R   +          +++L  ++RST  IL   + V   
Sbjct: 245 DPNQSIYKWRGADINNILSFERDYPE--------AKVVKLEQNYRSTGTILQAANAVIKH 296

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
              A+ L                     +LW        ++            +      
Sbjct: 297 NLAAKDL---------------------ELW-------TAKGAGSPIHVYRAEN------ 322

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  +A  +  +               Q KD++VL R    + ++  +        
Sbjct: 323 -ERFEAYYVADKVKELKLAGR----------QYKDMVVLYRTHAQSRVLEEVL----LRA 367

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IKDL+A  R I++  D  S + ++  P        I K+    
Sbjct: 368 GIPYTIFGGLKFYERKEIKDLLAYLRVIVNPADSQSLLRIINVPKRGIGASSIEKMTAFA 427

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYI-------HELIHIAQFCSPHDFFTLILGAKKG 513
            E +    +                K         ++L   +QF S  +    +L     
Sbjct: 428 VERDLNLLHALALVEDIPGIPAKARKQCNLLVDLLNDLRQQSQFLSVTEITEEVLNRTGY 487

Query: 514 RQQFISRFGNE---VIDVLDEFLNFTLRNE--QNSYSSLQELISELEQYPPTIKRAHSAN 568
           + +  +    E    I+ L EFL+ T   +   +    L++ +  +       +     N
Sbjct: 488 KAELEAENTVETKTRIENLQEFLSVTKEYDKQHSEEGGLEDFLGSISLVTDMDRHDP--N 545

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            +++ +MT+H+AKGLE PVVF++     VF H                            
Sbjct: 546 ADQLVLMTLHSAKGLEYPVVFMIGMEEGVFPHSRALYDQEELEEERRL------------ 593

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                                  YVG+TRA +QL +      +   ++N       +
Sbjct: 594 ----------------------AYVGITRAQEQLYLTHCWERTLFGRTNINQKSRFL 628


>gi|150007586|ref|YP_001302329.1| putative helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936010|gb|ABR42707.1| putative helicase [Parabacteroides distasonis ATCC 8503]
          Length = 780

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 112/697 (16%), Positives = 206/697 (29%), Gaps = 131/697 (18%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150
           +L   Q      ++   TY  ++     +         L + +   Y+    +   +DF+
Sbjct: 138 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFD 197

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN L +       +  K      ++L+DE QDT+  Q  +++ L E         
Sbjct: 198 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 245

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  VGD+ QSIYSF GA    +L+ K +             I +L  ++RST +I
Sbjct: 246 -RHGHICVVGDDAQSIYSFRGANIDNILQFKNLY--------TGCRIFKLERNYRSTQNI 296

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + +                                         + +   +   +T
Sbjct: 297 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGNKVSVFT 329

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           SY D     +        +A  I+ M         G        D  +L R    + ++ 
Sbjct: 330 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 373

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD+++  R I++  D+ +   ++  P     +
Sbjct: 374 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRLIVNPHDEEALKRIINYPTRGIGD 429

Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             + K+         +++       EY     N    K       I   I   +  S  +
Sbjct: 430 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 489

Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553
             TL++               E     + L E L            E     ++ + ++E
Sbjct: 490 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 549

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +             N ++V +MTVH AKGLE   VF+V     +F     K         
Sbjct: 550 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 602

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL YV +TRA    ++    +    
Sbjct: 603 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 634

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K++  T    + D    D +   +      +     A E        +P  +   ++  
Sbjct: 635 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDD 691

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                            +      + S       + L
Sbjct: 692 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDLSGL 728


>gi|225629600|ref|ZP_03787615.1| DNA helicase II [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591546|gb|EEH12571.1| DNA helicase II [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 514

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/557 (18%), Positives = 184/557 (33%), Gaps = 121/557 (21%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 A  +   Y+E  K    +DF DL++    L  +      +      +  ++++D
Sbjct: 38  RPVYVTALKVYHQYQERLKFLNSVDFGDLLLYNIQLFNQ---KTEVLSYYQNKFKYVMVD 94

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ IQ+  ++ L ++             +  VGD+ QSIYS+ GAE + +L+    
Sbjct: 95  EYQDTNAIQYLWLKYLAKE----------HSNICCVGDDDQSIYSWRGAEVENILKFFDD 144

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
            +            ++L  ++RST+ IL     V +  +                     
Sbjct: 145 FKN--------AKTVKLECNYRSTSHILATASYVINHNKTRLEKK--------------- 181

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 LW        +    ++ +    +D   +       AR I+  I  +       
Sbjct: 182 ------LW-------TTNIEGEKVNLIKLWDGKAE-------ARFISEQILKL------- 214

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +  DI VLVR    T ++          Y I           +   ++D++A
Sbjct: 215 -----NKYRFSDIAVLVRATFQTRVLEEYF----IKYSIPYKIISGVKFYERQEVRDIIA 265

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANC 476
             R + +  DDL+F  ++  P  +     + KI  T +    + +E         +    
Sbjct: 266 YLRLVTNNNDDLAFERIVNRPKRSIGATTLKKIYTTAQDNKISFFEAAKILVNSNQVTER 325

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLN 534
                   +  I     I      H+F  ++       +   +    G   I+ + E ++
Sbjct: 326 IKLSLNDFLNKIKAWEEIVSVKPLHEFVKIVANQSGYIEMLENEEVTGLARIENVKELIS 385

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                +           + LE     ++  +  N + V +MT+H AKGLE P VFL    
Sbjct: 386 SLKNFDNA--------TTFLEHISLVMEVDNMNNDDTVYVMTLHAAKGLEFPCVFLPGWE 437

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F H+                                           EE  RL YVG
Sbjct: 438 EGLFPHQRSFDDKSG--------------------------------KALEEERRLAYVG 465

Query: 655 MTRASDQLIICKHSNTS 671
           +TRA ++LII       
Sbjct: 466 ITRAKERLIISCADRRE 482


>gi|329767008|ref|ZP_08258536.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341]
 gi|328837733|gb|EGF87358.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341]
          Length = 728

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 184/549 (33%), Gaps = 112/549 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + AHY+   KKN VLDF+DL++ T  L KK      +      +  +I +DE QDT+
Sbjct: 168 VAEIYAHYQRYLKKNSVLDFDDLMLKTIILFKKFPE---VLAIYQNKFEYIHVDEYQDTN 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           +IQ+ +I+ L+E            + +  VGD+ QSIYS+ GA    ++  ++       
Sbjct: 225 VIQYRLIKMLSE----------VHKNVCVVGDDDQSIYSWRGACSDNIINFEKDY----- 269

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
              +   +I L  ++RS + IL   + V     + +  +                     
Sbjct: 270 ---KDVELIFLDQNYRSNSTILDAANAVIKNNTDRKEKA--------------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       +++   +   + +  D    +         IA  I  +             
Sbjct: 306 LWS------ENKGGGKISVYAASNDKDETDD--------IAKKILELKKEG--------- 342

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KDI +L R    +  +            I               ++DL+A    I+
Sbjct: 343 -ISYKDIAILYRANYLSRQMENSCLAF----GIPYKLIGSLKFLQRQEVRDLLAYLNVIV 397

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF-ANCGISKFQHVIKY 487
           +++D+ S   ++  P        + KI         ++++ ++   A     K    +  
Sbjct: 398 NRDDEFSLRRIINVPKRGIGASSMEKIDNYATQYGISLFDALKNIEAVGVSKKITTNVHL 457

Query: 488 IHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
           +  LI         S  +    I                      + + E ++   +   
Sbjct: 458 LTNLIEKYSETDKYSIDELIIGIYKDSGYESMLKESNDAYAESRIENISELVSSAKQFSS 517

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            +      LI  + +   T         + V + TVH AKGLE  VVF++     +F   
Sbjct: 518 MN----DSLIDFISEMSLTSDADDENEEDSVVLSTVHAAKGLEYKVVFIMGLEENLFPS- 572

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                        I        +K+  EE  RL YV +TRA ++
Sbjct: 573 -----------------------------IRDAESSADEKNKMEEERRLAYVAITRAKEK 603

Query: 662 LIICKHSNT 670
           L +   +  
Sbjct: 604 LFMSYANRR 612


>gi|301310450|ref|ZP_07216389.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3]
 gi|300832024|gb|EFK62655.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3]
          Length = 779

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 112/698 (16%), Positives = 206/698 (29%), Gaps = 131/698 (18%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150
           +L   Q      ++   TY  ++     +         L + +   Y+    +   +DF+
Sbjct: 138 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFD 197

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN L +       +  K      ++L+DE QDT+  Q  +++ L E         
Sbjct: 198 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 245

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  VGD+ QSIYSF GA    +L+ K +             I +L  ++RST +I
Sbjct: 246 -RHGHICVVGDDAQSIYSFRGANIDNILQFKNLY--------TGCRIFKLERNYRSTQNI 296

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + +                                         + +   +   +T
Sbjct: 297 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGNKVSVFT 329

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           SY D     +        +A  I+ M         G        D  +L R    + ++ 
Sbjct: 330 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 373

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD+++  R I++  D+ +   ++  P     +
Sbjct: 374 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRLIVNPHDEEALKRIINYPTRGIGD 429

Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             + K+         +++       EY     N    K       I   I   +  S  +
Sbjct: 430 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 489

Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553
             TL++               E     + L E L            E     ++ + ++E
Sbjct: 490 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 549

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +             N ++V +MTVH AKGLE   VF+V     +F     K         
Sbjct: 550 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 602

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL YV +TRA    ++    +    
Sbjct: 603 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 634

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K++  T    + D    D +   +      +     A E        +P  +   ++  
Sbjct: 635 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDD 691

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
                            +      + S       + L 
Sbjct: 692 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDASVLR 729


>gi|160946300|ref|ZP_02093509.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270]
 gi|158447416|gb|EDP24411.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270]
          Length = 1261

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 124/672 (18%), Positives = 245/672 (36%), Gaps = 54/672 (8%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQK-FTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           + L++  +     E   + ++ FL     + + +   +E+ +    +K++L   + E  +
Sbjct: 265 ENLKKFLKDNTKFEELKISTNEFLRLNFGSFRISKCDEEVKEIYNKVKKELDSIKSEISE 324

Query: 110 IRDRF---------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
                          +  ++    +   +       + E K+K   +DF D+     ++L
Sbjct: 325 SLKTLNLDLENIKKESDLIYPYVRSISDVVIKFKEKFWERKQKFNYVDFADIEHLALEIL 384

Query: 161 KKRDVSAWI-----RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              DV   I       +  ++ + + IDE QD++L+Q  ++ ++ ++             
Sbjct: 385 VDIDVDGNIKPSKTALEYQEKYSEVFIDEYQDSNLVQEILLSAVAKE-----------NN 433

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            F VGD KQSIY F  A+P   + +     +   +       I L  +FRS  +IL   +
Sbjct: 434 RFMVGDVKQSIYRFRQADPSIFMEKYENYYRVEEDIESFNRKIMLYANFRSRKEILEGTN 493

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRI------GQVGTVQLWEQVVSQHDSQCNPQQESW 329
            VFS     +    D T   R               G V++   V    DS+   +    
Sbjct: 494 LVFSKIMKKETGELDYTVDERLNPMASFKESDENVGGAVEIL-LVDENSDSEDEDEIILT 552

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN------GKKRVIQAKDILVLVRKR 383
             Y +   +  S  +   +IA TI NM+                 R ++ KDI++L+R  
Sbjct: 553 DEYSEDFEEMKSFKLECIKIANTIYNMMNNKENPFKVYDKNLDDYRKVEYKDIVILMRSP 612

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                I      +  +Y I +         D   +  ++ L + I +   D+  + ++ S
Sbjct: 613 SSNTKI---LEEVFLEYNIPIYAESTGGYFDTFEVDTIINLLKIIDNPMQDIPLISVMYS 669

Query: 444 PLFNFSEDDIFKICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
           P++NF+  ++ +I     E +        + +   +       K    I  +   I    
Sbjct: 670 PIYNFTSKELSEIRLVDRELKFYELLIKILEDEDIEIRISLKEKISKFIYDLKLFIEKKS 729

Query: 497 FCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
             S  +    +           +   G +    L          E+NSY  L   ++ ++
Sbjct: 730 LVSADELIWFLYKYTGYYNYVGLLDMGEQRKTNLMLLFEKAKNYEKNSYKGLFNFVNYIQ 789

Query: 556 QYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           +       + +     + N V+IM++H +KGLE P+VFL +T  +         + +   
Sbjct: 790 KISLKSDISEAKLISEDANVVKIMSIHKSKGLEFPIVFLANTNKKFNFRADDSNLVLHQK 849

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           L     +     ++   + +   + K  K     E  RLLYV MTRA ++LII       
Sbjct: 850 LGFGAVVYDMDKKTSFNSIMKKKIEKFKKNEQIAEEMRLLYVAMTRAKEKLIITGRVKDY 909

Query: 672 NEKKSNQRTWYD 683
              +    +  D
Sbjct: 910 ENLREEISSGID 921



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 62/180 (34%), Gaps = 25/180 (13%)

Query: 780  FNRGLIIHKLLQVIFTLP---------EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
              +G I H  +Q++               + K+ I S+  KN       E  N+   I +
Sbjct: 1083 AEKGTIFHLAMQLLDFSKFDTEDVSKIREEIKSQINSFVEKNIMSLDEIETINI-NWIVK 1141

Query: 831  LLENPMMTTAMSCD----SYSEVSVSGKINC----------PKKDIIISGRIDQISI-SQ 875
             +++ +       +     + E ++   I              + I++ G ID       
Sbjct: 1142 FIKSDIFKEIYIANKFGKLFKEKAIDYNIKLKNLFKDENIEEYEKIMVVGIIDLFFENEN 1201

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              I + +YKT +   + +E +   +  QL +Y+  ++D    K     L      +   I
Sbjct: 1202 GEIILLDYKTDYVTKENLEEVKARYKVQLDLYKSAIEDISGKKVTKKGLYLFGINEFVEI 1261


>gi|255013887|ref|ZP_05286013.1| putative helicase [Bacteroides sp. 2_1_7]
          Length = 780

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 112/697 (16%), Positives = 206/697 (29%), Gaps = 131/697 (18%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150
           +L   Q      ++   TY  ++     +         L + +   Y+    +   +DF+
Sbjct: 138 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFD 197

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN L +       +  K      ++L+DE QDT+  Q  +++ L E         
Sbjct: 198 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 245

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  VGD+ QSIYSF GA    +L+ K +             I +L  ++RST +I
Sbjct: 246 -RHGHICVVGDDAQSIYSFRGANIDNILQFKNLY--------TGCRIFKLERNYRSTQNI 296

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + +                                         + +   +   +T
Sbjct: 297 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGNKVSVFT 329

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           SY D     +        +A  I+ M         G        D  +L R    + ++ 
Sbjct: 330 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 373

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD+++  R I++  D+ +   ++  P     +
Sbjct: 374 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRMIVNPHDEEALKRIINYPTRGIGD 429

Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             + K+         +++       EY     N    K       I   I   +  S  +
Sbjct: 430 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 489

Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553
             TL++               E     + L E L            E     ++ + ++E
Sbjct: 490 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 549

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +             N ++V +MTVH AKGLE   VF+V     +F     K         
Sbjct: 550 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 602

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL YV +TRA    ++    +    
Sbjct: 603 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 634

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K++  T    + D    D +   +      +     A E        +P  +   ++  
Sbjct: 635 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDD 691

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                            +      + S       + L
Sbjct: 692 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDLSGL 728


>gi|116873192|ref|YP_849973.1| ATP-dependent DNA helicase PcrA [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742070|emb|CAK21194.1| ATP-dependent DNA helicase, PcrA family [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 733

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 103/567 (18%), Positives = 188/567 (33%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 187 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF 243

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 244 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEEN 285

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 286 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 317

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +           R +   D  +L R  
Sbjct: 318 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAILYRTN 361

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 362 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 417

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    +     +  F
Sbjct: 418 PKRGVGPGTLEKLNNVAAAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDF 477

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 478 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLLAFLTD 537

Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K    +   +  V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 538 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 587

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 588 ------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRM 623

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 624 LYGRPSSNQESRFIGEIPRDLLELGNE 650


>gi|323140468|ref|ZP_08075396.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT
           12067]
 gi|322415036|gb|EFY05827.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT
           12067]
          Length = 741

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 108/757 (14%), Positives = 230/757 (30%), Gaps = 138/757 (18%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
            +  L    V                 + ++   +  A+        F    +  L  + 
Sbjct: 40  RIAHLLQQGVRPYRILAITFTNKAAAEMRERVDRMAGAAARDVWLFTFHAFCARLLRYEL 99

Query: 79  TP---------------QKNIITQEINK-KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
                             KN+I Q + +    + +  L          ++       +  
Sbjct: 100 ENLNGYANNFAIYDTSDSKNLIKQVMKEMNLDEKRFPLPAIISHISNAKNALLLPDAYAR 159

Query: 123 TLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             +         +   Y++  + N  +DF+DL++    LL++      +R K  ++ +++
Sbjct: 160 EASGYYEQQVAKIYDAYQKKLQANNAVDFDDLLLLALRLLQENPA---VREKYQRKFDYL 216

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++DE QDT+  Q+ + + L              R +  VGD  QSIY + GA+ + +L  
Sbjct: 217 MVDEYQDTNHAQYLLTKLLAA----------GHRNICVVGDADQSIYGWRGADIQNILDF 266

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           ++              +++L  ++RST  IL   + V       +  +            
Sbjct: 267 EKDYP--------DAKLVKLEQNYRSTQVILDAANAVIDNNSGRKPKN------------ 306

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW        +  N  +  +    D   +       AR +   +  +    
Sbjct: 307 ---------LW-------TANGNGSEIVYYQANDERDE-------ARYVIENMQKL---- 339

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                      +  D+ VL R    + +   +         I+          +   IKD
Sbjct: 340 -----QLNEGAKLGDMAVLYRTNAQSRVFEEML----IKSGIAYTMVGGTKFYERKEIKD 390

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------F 473
            +A  R + +  D LS + ++  P     +  + ++        ++++E +         
Sbjct: 391 ALAYLRLLYNPHDSLSLLRIINVPRRGIGDATMARLQEYANASGQSLFEVVTNAADVPGL 450

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
           A    +K   +   + EL+  A           +L      ++  +    +    ++ L 
Sbjct: 451 ARRFANKLDELSGLLFELMGEAADVPVKQLLDDVLLKTGYLEELQNSKDPQDESRVENLK 510

Query: 531 EFLNFTLRNE-----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           E L+ T              +L+  ++++                 V +MT+H+AKGLE 
Sbjct: 511 EMLSVTEEFAVKCERNGEEPTLENFLADVALVADID--DAELGEEAVTLMTLHSAKGLEF 568

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           P VFLV     +F H                                      + ++  E
Sbjct: 569 PNVFLVGMEEGIFPHSRTL----------------------------------MDENEIE 594

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YVG+TRA   L +      +   ++   T    + +   N   V K  +     
Sbjct: 595 EERRLCYVGITRAEKHLFLSNARTRTIYGRTQYYTPSRFLQEVPRNLVHVIKRPVVQRPA 654

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             + +    +  +       +     +          
Sbjct: 655 MTQQVHKPTAKENANWFEQHKASFFPRESSAAAGCSF 691


>gi|302553643|ref|ZP_07305985.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
 gi|302471261|gb|EFL34354.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
          Length = 826

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 119/723 (16%), Positives = 231/723 (31%), Gaps = 133/723 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 183

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + K  +LK +L   +D   +  D F            
Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEEDFAAQASDGFEKT--------- 233

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 234 ---LAQAYAMYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRT-----LFAVGDEKQSIYSFHGAEPKRVLREK 241
           DT+  Q+ ++R L        +    P       L  VGD  QSIY+F GA  + +L+ +
Sbjct: 288 DTNHAQYALVRELVGTTEHPVDVPPGPEDVPPAELCVVGDADQSIYAFRGATIRNILQFE 347

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         + I L  ++RST  IL+  + V    E+ +  +             
Sbjct: 348 EDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------- 386

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW       ++    Q   + +  +           A+ +A  I  +     
Sbjct: 387 --------LW------TNAGTGAQITGYVADTEHDE--------AQFVAEEIDRLTDAGE 424

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                     +A D+ V  R    + +   +         +           +   ++D+
Sbjct: 425 ---------AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDV 471

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FA 474
           +A  R + + ED +    +L  P     +     I    + E  +  + +++       A
Sbjct: 472 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALSQREKISFPQALKRVDEAYGMA 531

Query: 475 NCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
               +  +     + +L  I +  + P      +L       +  +    +    I+ L 
Sbjct: 532 ARSTNAVRRFNALMEDLRTIVESGAGPATVLEAVLERTGYLAELQASTDPQDETRIENLQ 591

Query: 531 EFLNFTLRNEQNSYSS----LQELISELEQYPPTIKRAHSANHNEV-RIMTVHTAKGLES 585
           E     +  EQ         L + + ++     + +     + + V  +MT+HTAKGLE 
Sbjct: 592 ELAAVAMEFEQERGEDEQGTLADFLEQVALVADSDQIPDEEDGDGVITLMTLHTAKGLEF 651

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVFL      VF H                                       +    E
Sbjct: 652 PVVFLTGMEDGVFPHMRALG----------------------------------QTKELE 677

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YVG+TRA ++L + + +  S   + +       + +        K+   T   +
Sbjct: 678 EERRLAYVGITRARERLYLTRSTMRSAWGQPSYNPPSRFLEEIPPAHLEWKRTGATAPAS 737

Query: 706 KDE 708
              
Sbjct: 738 SGP 740


>gi|253580201|ref|ZP_04857468.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848720|gb|EES76683.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 744

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/688 (16%), Positives = 216/688 (31%), Gaps = 129/688 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T ++  +              +       L ++   + NI T++  +         +   
Sbjct: 91  TCVRILRRYIDRLGYDTRFAIYDTEDQKTLMKEVCRKLNIDTKKTKE---------RSLL 141

Query: 105 DEFIKIRDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
            +    +D   T    +              +   Y+ A ++N  LDF+DLI+ T +L +
Sbjct: 142 AQISHAKDELITPDEMELNAGGDFVKKKVAEVYREYQAALRRNNALDFDDLIVKTVELFQ 201

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                  +     +   +I++DE QDT+  Q++ I  L   +            L  VGD
Sbjct: 202 N---CGDVLENYQERFRYIMVDEYQDTNTAQFKFISLLASKYE----------NLCVVGD 248

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY F GA    +L  + +             +I L  ++RST +IL   + V +  
Sbjct: 249 DDQSIYKFRGANIGNILGFEHVFP--------DAKVIRLEQNYRSTKNILNAANAVIANN 300

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
            + +  +                     LW             ++  +  + +   +   
Sbjct: 301 TSRKSKT---------------------LW-------TENSEGERIHFRQFMNGYEE--- 329

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               A  +   IS                 + KD  VL R    + L             
Sbjct: 330 ----AEYVIGEISRAHRE---------NGAKYKDCAVLYRTNAQSRLFEEK----CLLAN 372

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           I               IKDL+   + I +  DDL+   ++  P        + +I     
Sbjct: 373 IPYKIVGGVNFYARKEIKDLLCYLKTIDNSRDDLAVRRIINVPKRGIGATTLGRIQDYAD 432

Query: 461 HETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
             + + Y+ ++           +SK    + +I  L   A+  +  +    ++       
Sbjct: 433 KMSVSFYDALRVAEEVPSIGRSLSKIDGFVTFIQSLKSKAESYTVRELLEEVIELTGYVA 492

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIKRAHSA 567
           +  +   +E    I+ +DE ++ T        EQ   ++L   + E+             
Sbjct: 493 ELQAEDTDESKARIENIDELISKTESYQEVMEEQGQTATLSGFLEEIALIADIDSVDP-- 550

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           + + V +MT+H+AKGLE P VFL      +F                             
Sbjct: 551 DQDYVLLMTLHSAKGLEFPRVFLAGMEDGMFPSYMS------------------------ 586

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                   I    +S  EE  RL YVG+TRA + L +          +         V +
Sbjct: 587 --------IISDDRSDLEEERRLCYVGITRAMEDLTLTSARQRMLRGEVQYNKVSRFVRE 638

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWS 715
                  + +         +E I  + +
Sbjct: 639 IPRELVDLGQEAQEKKKKIEEMIQADRN 666


>gi|227504218|ref|ZP_03934267.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
 gi|227199173|gb|EEI79221.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
          Length = 869

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 108/777 (13%), Positives = 222/777 (28%), Gaps = 165/777 (21%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+                + ++   L      +     
Sbjct: 98  GAGSGKTAVLTRRIAYLMRNRGVAPWEILAITFTNKAAAEMKERVGQLVGPVAERMWVST 157

Query: 66  FSLLSSFFLTQKFTPQKNIIT------------------QEINKKSPDLKEKLKKSQ--D 105
           F  +    L Q       + T                  +++         ++  +Q  +
Sbjct: 158 FHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLTMIAKDMQLDLKKYTARVLANQISN 217

Query: 106 EFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
              ++          + T     +    +   Y+   +    +DF+DLI     +  +  
Sbjct: 218 HKNELVSPDYALAEAEKTKNPFDITVARVFDEYQRRLRAANSVDFDDLIGEVVRIFNQHP 277

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +   H+LIDE QDT+  Q+ ++ +L     +G +       L  VGD  Q
Sbjct: 278 ---QVVDFYRRRFKHVLIDEYQDTNHAQYALVSALVGRGELGPDA----PELCVVGDSDQ 330

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY+F GA  + +   +R   +           I L  ++RST  IL   + V +  E  
Sbjct: 331 SIYAFRGATIRNIQEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNEGR 382

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  +                     LW        +     +       +   +      
Sbjct: 383 REKN---------------------LW-------TAHGEGAKIVGYVADNEHDE------ 408

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR IA  I ++                  DI ++ R    +  +  +         I  
Sbjct: 409 -ARFIASEIDSLSDKGR----------DYSDIAIMYRTNNASRALEDIF----VRSGIPY 453

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-- 462
                    +   I+D++A  R I + +D +S   ++  P     +    +I        
Sbjct: 454 KVVGGTRFYERREIRDMVAYLRIIDNPDDTVSLRRIINVPKRAIGDKAQAQIALHAENLG 513

Query: 463 ---TETVYEY----IQKFANCGISKFQHVIKYIHELIHIAQFCS--------PHDFFTLI 507
               + +Y+     +       ++      + +  +       +          +  + +
Sbjct: 514 ISFGKALYDAAAGNVAGLGTRAVNSVSKFNEMMEGIRAQIPGMTNEVTHQPDLGELLSAV 573

Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNS--------------------- 543
           L A   R +  +    +    +D L+E ++        +                     
Sbjct: 574 LDATGYRAELENSNDPQDGARLDNLNELVSVAREFSSEAANQLAFTGADVENDISPELAE 633

Query: 544 ----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 SLQ  + ++       +         V +MT+HTAKGLE PVVFL       F 
Sbjct: 634 GEALPGSLQAFLEKVSLVADADQI-PDNESGVVTLMTLHTAKGLEFPVVFLTGWEDGQFP 692

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H                                             E  RL YVG+TRA 
Sbjct: 693 HMRSLGDP----------------------------------KELSEERRLAYVGITRAR 718

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           +QL   +    S+            + +   +    ++ +  +S++        +  
Sbjct: 719 EQLYFTRAILRSSWGNPMTNPASRFLAEVPEDLIDWRREEPDSSLSSAWGGDDSYQY 775


>gi|325913324|ref|ZP_08175692.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B]
 gi|325477427|gb|EGC80571.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B]
          Length = 742

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E + + L          ++ + +L         ++  +   +            
Sbjct: 66  AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 L ++   + NI +++ +     L   +  ++++ +   + +      +      
Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y++  + +C++DF+DLI+ T  L K       + +    +  +IL+DE QD
Sbjct: 172 ---AIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+   L +            + +  VGD  QSIY + GA  + +L  ++  +  
Sbjct: 226 TNQAQYELCHLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I+L  ++RST  IL   + V    +N +                      
Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +     + ++        +       A  I   I+  I          
Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  I            I           D   IKD+MA  R 
Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481
           + +  D +S   ++ +P        I  F+     +    +             K     
Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +   + + E+I  A+  +  +    IL          +    E     + LDEFL  T +
Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521

Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +   + +    + +   L +    + +     N ++V +MT+H AKGLE PVVFLV   
Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                           S  EE  RL YVG
Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607

Query: 655 MTRASDQLIIC 665
           +TRA  QL + 
Sbjct: 608 ITRAKKQLYLT 618


>gi|309808887|ref|ZP_07702768.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           01V1-a]
 gi|308167885|gb|EFO70022.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           01V1-a]
          Length = 742

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 121/690 (17%), Positives = 220/690 (31%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ + L  +         
Sbjct: 30  GAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLDSDADSIWMST 89

Query: 66  FSLLSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L +         N    +  ++   +K  LK+   +  K   +     +  +
Sbjct: 90  FHALCVRILRRYAEKIGYANNFSIADTAEQLTLIKRILKELNIDSKKFDPKSLVNAISNA 149

Query: 123 TLASLTLAKY--------------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L   +Y              +   Y++  + +C++DF+DLI+ T  L K       
Sbjct: 150 KNDLLDPVEYAKQVSNEYEKKIAIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE--- 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           + +    +  +IL+DE QDT+  Q+E+   L +            + +  VGD  QSIY 
Sbjct: 207 VLHYYQNKFWYILVDEYQDTNQAQYELCHLLAQQ----------HKNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++  +          + I+L  ++RST  IL   + V    +N +   
Sbjct: 257 WRGANMQNILNFEQDYRND------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     + ++        +       A  
Sbjct: 311 ---------------------LW-------TNSGEGSKVNYYRASTGNDE-------AIF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I+  I              +  D  +L R    +  I            I      
Sbjct: 336 IIGKINKEIKE---------NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETV 466
                D   IKD+MA  R + +  D +S   ++ +P        I  F+     +    +
Sbjct: 383 GHKFYDRKEIKDIMAYLRLVANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTAL 442

Query: 467 YEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                        K     +   + + E+I  A+  +  +    IL          +   
Sbjct: 443 EALQSLELAPISGKLFNIMKDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALRAEHT 502

Query: 523 NEVI---DVLDEFLNFTLRNE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIM 575
            E     + LDEFL  T + +   + +    + +   L +    + +     N ++V +M
Sbjct: 503 IEADTRLENLDEFLTVTKQFDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALM 562

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE PVVFLV     +F                                     
Sbjct: 563 TLHAAKGLEFPVVFLVGMEEGIFP----------------------------------LA 588

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                 S  EE  RL YVG+TRA  QL + 
Sbjct: 589 RAQSDNSELEEERRLAYVGITRAKKQLYLT 618


>gi|306835613|ref|ZP_07468623.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC
           49726]
 gi|304568504|gb|EFM44059.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC
           49726]
          Length = 847

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 111/771 (14%), Positives = 218/771 (28%), Gaps = 164/771 (21%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + + +  V+                + ++  +L      +     
Sbjct: 73  GAGSGKTAVLTRRIAYLMRHRGVNPWEILAITFTNKAAAEMKERVGSLVGPVAERMWVST 132

Query: 66  FSLLSSFFLTQKFTPQKNIITQ----EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
           F  +    L Q       + T     + +     L    K  Q +  K   R    ++  
Sbjct: 133 FHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDMQLDLKKYTPRVLANQISN 192

Query: 122 STLASL-----------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                +                 T    + A Y+   +    +DF+DLI     +  +  
Sbjct: 193 HKNELVGPAEAADKAQQTKNPFETTVADVYAEYQRRLRAANAVDFDDLIGEVVRIFTEH- 251

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +   H+LIDE QDT+  Q+ ++ +L     +G +       L  VGD  Q
Sbjct: 252 --KQVVEFYRRRFKHVLIDEYQDTNHAQYALVAALVGKGELGPDA----PELCVVGDSDQ 305

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY+F GA  + +   +R   +           I L  ++RST  IL   + V +  EN 
Sbjct: 306 SIYAFRGATIRNIEEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNENR 357

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  +                     LW        +  + +        +   +      
Sbjct: 358 REKN---------------------LW-------TAHGDGESIVGYVADNEHDE------ 383

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR IA  I  +                  DI V+ R    +  +  +         I  
Sbjct: 384 -ARFIAAEIDALADKGH----------SYSDIAVMYRTNNSSRALEDIF----IRSGIPY 428

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463
                    +   I+D++A  R + + +D +S   ++  P     +    +I     ++ 
Sbjct: 429 KVVGGTRFYERREIRDMVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQGQIALHAENQG 488

Query: 464 ETVYEYIQKFANCGISKFQ--------HVIKYIHELIHIAQFCS--------PHDFFTLI 507
            +  + +       +                 +  +                  +  T I
Sbjct: 489 ISFGKALADVPRGDVPGLGTRAVNAVTKFNDMMEGIRAQIPGMRDEVTGQPDLGELLTAI 548

Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNS--------------------- 543
           L A   + +       +    +D L+E ++        +                     
Sbjct: 549 LDATGYKAELEKSNDPQDGARLDNLNELVSVAREFTSEAANQLAAAGADAVDPNELLEEG 608

Query: 544 ---YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                SLQ  + ++       +    +    V +MT+HTAKGLE PVVF+       F H
Sbjct: 609 EAAPGSLQAFLEKVSLVADADQI-PDSETGVVTMMTLHTAKGLEFPVVFVAGWEDGQFPH 667

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                        E  RL YVG+TRA +
Sbjct: 668 MRSLGNP----------------------------------KELSEERRLAYVGITRARE 693

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +L + +    S             + +   +    ++    + +       
Sbjct: 694 KLYLTRAILRSAWGNPVTNPASRFLAEIPEDLIDWRREDSDSDLTGSWGAD 744


>gi|148544658|ref|YP_001272028.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016]
 gi|184154011|ref|YP_001842352.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227363781|ref|ZP_03847888.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3]
 gi|325682992|ref|ZP_08162508.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A]
 gi|148531692|gb|ABQ83691.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016]
 gi|183225355|dbj|BAG25872.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112]
 gi|227071138|gb|EEI09454.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3]
 gi|324977342|gb|EGC14293.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A]
          Length = 757

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 118/813 (14%), Positives = 240/813 (29%), Gaps = 153/813 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   N             + ++   L   S  +     
Sbjct: 31  GAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIWVST 90

Query: 66  FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-EFIKIRDRFNTYKMFKS 122
           F  L    L +           T     +   L +++    + +  K   R     +  +
Sbjct: 91  FHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAELNIDTKKFDPRSILSAISNA 150

Query: 123 TLASLT--------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
             A LT              +       Y++  + N  LDF+DLI+ T +LL+       
Sbjct: 151 KNALLTPDDYSKEANSMFENMVARAYKLYQQELEANQALDFDDLIMKTIELLESD---QE 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L + +          + L  VGD  QSIY 
Sbjct: 208 TLEFYQDKFHYIHVDEYQDTNDAQYRLVNLLAQKY----------QNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA    +L  +    +           + L  ++RST  IL   ++V +     +  +
Sbjct: 258 WRGANMNNILNFEHDYPQ--------AKTVMLEQNYRSTQTILNAANEVIANNLYRKKKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + S+    +   +       A+ 
Sbjct: 310 ---------------------LW-------TENGQGDKISYYRAQNEHDE-------AQF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I             +K      D  +L R    + ++            I      
Sbjct: 335 IVSKIKE---------EQEKHGYHFNDFAILYRTNAQSRMVEETF----LKSSIPYTMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY- 467
                D   I+D++A    I++  D +SF  ++ +P        +  +    +E      
Sbjct: 382 GHKFYDRREIRDILAYLTLIVNPADSMSFERVVNTPKRGIGLTSVEHLRNFANENGWTLL 441

Query: 468 ------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                 +   +      +K     + +  L   A++ +  D    IL      +   +  
Sbjct: 442 KAAQNVDTASEITARTRNKIDEFGQLMANLTKQAEYLTLTDLTEQILELSGYNKMLSNDR 501

Query: 522 GNE---VIDVLDEFLNFTLRNEQNS----YSSLQELISELEQYPPTIKRA-HSANHNEVR 573
             E     + LDEF + T   ++        +LQ++I+ L        +         V 
Sbjct: 502 SLEAQARRENLDEFKSVTQEYDEQHKDDDDPNLQKIINFLADLALVSDQDNVDEQAPAVT 561

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 562 LMTLHAAKGLEFPVVFLVGMEEGIFPLSRALMEDDELEEERRL----------------- 604

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                             YVG+TRA  +L +                +  ++Y     ++
Sbjct: 605 -----------------AYVGITRAKKKLYLT-------------NAFSRLLYGRIQRNQ 634

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             + ++  +S       +   ++      P +R               +     ++    
Sbjct: 635 PSRFVEEIDSELLQFENSPSGNSIKDSKLPFDRAAATAT-----TYRDQQKRTYRSAGKR 689

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
              +  +               +++ + +G ++
Sbjct: 690 VKPITNTGTGADKVGWKTGDKVEHKKWGQGTVV 722


>gi|312864740|ref|ZP_07724971.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415]
 gi|311099867|gb|EFQ58080.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415]
          Length = 764

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/633 (16%), Positives = 197/633 (31%), Gaps = 119/633 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+E  +++  +DF+DLI+ T  L         +     Q   +I +DE QD
Sbjct: 166 QIVAKCYKAYQEELRRSEAMDFDDLIMLTLRLFDSNPD---VLAYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPE- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST  IL   + V +   N +                      
Sbjct: 272 -------AKVVLLEENYRSTKKILQAANDVINNNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             Q+  +    D   +       A  +A TI   +  +       
Sbjct: 306 --LW-------TQNDEGQEIVYYQAHDERDE-------AVFVASTIDQEVRENRR----- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 345 ----DFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNV 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ E  ++              
Sbjct: 397 IANTHDNISYERIVNEPKRGVGPGTLEKIRTFALEQNLSLLEASEQIMLSPIKGKAAQAV 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             +   +  L       S  +    +L      +    +   E    I+ ++EFL  T  
Sbjct: 457 WDLANSLLNLRADLDNYSLTELVEAVLDKTGYLEALQVQNTLESQARIENIEEFLTVTKN 516

Query: 539 NEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            ++         + L +L   L +               EV +MT+H AKGLE PVVFL+
Sbjct: 517 FDENKDDAPEDEAGLDKLSRFLNDLALIADTDDGDVESAEVTLMTLHAAKGLEFPVVFLI 576

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                VF                                              EE  RL 
Sbjct: 577 GMEENVFPLS----------------------------------RAAEDPDELEEERRLA 602

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA + L +   ++ +   KSN       + +   +    + +    + +      
Sbjct: 603 YVGITRAEEVLYLTNANSRTLFGKSNYNRPTRFIREISDDLLDYQGLARPANSSFAATYR 662

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
               T   +   L +    ++     K      
Sbjct: 663 DSGETKFGQGMSLAQALQTRKAQAAPKSFATAR 695


>gi|160872129|ref|ZP_02062261.1| DNA helicase II [Rickettsiella grylli]
 gi|159120928|gb|EDP46266.1| DNA helicase II [Rickettsiella grylli]
          Length = 722

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/581 (19%), Positives = 201/581 (34%), Gaps = 118/581 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YEE   +N V+DF +L++ + +L  K      I +       HIL+DE QDT+ I
Sbjct: 174 RLYQSYEEVCDRNGVIDFAELLLRSYELFIKHPE---ILHYYQGRFQHILVDEFQDTNRI 230

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L+          S       VGD+ QSIY + GA  K +        +     
Sbjct: 231 QYAWLKLLS----------SGKNYFMIVGDDDQSIYGWRGARVKNIYDFTHDFPEH---- 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II L  ++RST  IL   + + +  +   G    S+                   
Sbjct: 277 ----QIIRLEQNYRSTGVILAASNALITHNDGRLGKKLWSSR------------------ 314

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      +  + +    F+ L +       AR I   I            G K+ +
Sbjct: 315 ----------GDGDKIALYGAFNDLDE-------ARFIINQIKQ----------GLKKEV 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A DI +L R    + ++           +I           +   IKD +A  R I ++
Sbjct: 348 HANDIAILYRSNAQSRVLEEAL----IHAQIPYRIYGGLRFFERAEIKDALAYLRLIANR 403

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQHV 484
            DD  F  ++ +P     +  + K+    R +  ++++        Q   +   +   H 
Sbjct: 404 NDDPGFERVINTPTRGIGDQTLQKLRLEARTQALSLWQAATYLLNQQCLPSRAANALAHF 463

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           I+ I ++    +  S  +    +L        +    G      I+ L+E +N T +   
Sbjct: 464 IQLIDKMDEEIKTFSLAEQTEHVLYQSGLFNHYKKEKGERGQARIENLEELINATRQFIP 523

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E+++ S L   ++ +           +  H  V++MT+H+AKGLE P VFL      +F 
Sbjct: 524 EESTLSILSSFLAHVALEAGE--HQANEQHACVQLMTLHSAKGLEFPWVFLCGMEEGLFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H                                   + H +    EE  RL YVGMTRA 
Sbjct: 582 H----------------------------------HLSHEEPGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            +L +            +       + +         +++ 
Sbjct: 608 RKLFLSYAEVRRLHGTESHHRPSRFISEIPKELVEEIRLRT 648


>gi|239916963|ref|YP_002956521.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
 gi|281414579|ref|ZP_06246321.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
 gi|239838170|gb|ACS29967.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665]
          Length = 858

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 127/800 (15%), Positives = 237/800 (29%), Gaps = 128/800 (16%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS-FFLTQK 77
              P     ++  NK  +   E     I   AQ +  ++            ++   L   
Sbjct: 111 RARPHEILAITFTNKAAAEMRERVAGLIGPTAQRMWISTFHSSAVRLLRNEAANIGLKST 170

Query: 78  FTPQKN------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA----SL 127
           FT   +      + T     +    +   K   +    +++       + +T+A      
Sbjct: 171 FTIYDSADSLRLVTTVAKQHELDPKRFAPKALLNRISSLKNELVEADDYAATVAEGDPWG 230

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y    ++   LDF+DLI  T  +    +    +     +   H+L+DE QD
Sbjct: 231 RAVAAVYRDYTARLRQANALDFDDLIGMTVHMF---EAFPRVLDNYRRRFRHVLVDEYQD 287

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +IR L       +   +    L  VGD  QSIY+F GA+ + ++  ++     
Sbjct: 288 TNHAQYRLIRLLAGPAGDPEGVETPGGELTVVGDSDQSIYAFRGADIRNIVEFEQDF--- 344

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I+L  ++RST  IL   + V     + +                      
Sbjct: 345 -----TDAVTIKLEQNYRSTQTILDAANAVIERNPDRRPKR------------------- 380

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW            P    + +  +S   E         IA TI  +   D       
Sbjct: 381 --LW------TAEGEGPAIVGYAAENESAEAE--------WIAATIDRLQDED------- 417

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I+  D+ V  R    +  +            I           D   IKD +A  R 
Sbjct: 418 --GIRPSDVAVFYRTNAQSRALEERL----VTRGIPYRVIGGTRFYDRKEIKDALAYLRV 471

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH---- 483
           I++ +DD++   +L  P     +     +        + +    + A             
Sbjct: 472 IVNPDDDVNVRRILNEPKRGIGDRAEGAVAAWAQRNRSTFSAALRDAEHAPGLAARSLKA 531

Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
               ++ + +L  +A+   P      +L               +     D L E +    
Sbjct: 532 VNGFVQMMDDLAQVAETAGPATVLEAVLEQSGMLAALRESEDLQDESRADNLGELVAVVR 591

Query: 538 RNEQNSYSS-LQELISELEQYPPTIKRA---------HSANHNEVRIMTVHTAKGLESPV 587
             E+ +    L + + ++       +            +    +V +MT+HTAKGLE PV
Sbjct: 592 SFEKTTPDGTLSDFLEQVALVADADQLPTAPDVEGEALAEAQGQVTLMTLHTAKGLEFPV 651

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFL      VF H                                        +    E 
Sbjct: 652 VFLTGMEHGVFPH----------------------------------ARSMTDEKELAEE 677

Query: 648 NRLLYVGMTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            RL YVG+TRA  +L +      S     + +    +   + ++  + ER    +   S+
Sbjct: 678 RRLAYVGLTRARRRLFLTRAEARSLWGQHQFNPPSQFLGEIPEALIDWEREGTTRSAGSL 737

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-NPSTID 763
           +        ++       P  R          Q++ +          +       PS + 
Sbjct: 738 SLTGAGTSRYAGRFGGGRPAWRSRDDDDGARPQRLTRGDEPADLTVPSAVVRGKAPSRVQ 797

Query: 764 TKGKTNLESLLSDNQTFNRG 783
            + +    S          G
Sbjct: 798 PQKEIVALSPGDRVSHATFG 817


>gi|329920500|ref|ZP_08277232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G]
 gi|328936176|gb|EGG32629.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G]
          Length = 742

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E + + L          ++ + +L         ++  +   +            
Sbjct: 66  AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 L ++   + NI +++ +     L   +  ++++ +   + +      +      
Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y++  K +C++DF+DLI+ T  L K       + +    +  +IL+DE QD
Sbjct: 172 ---AIVYREYQKNLKHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+   L +            + +  VGD  QSIY + GA  + +L  ++  +  
Sbjct: 226 TNQAQYELCHLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I+L  ++RST  IL   + V    +N +                      
Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +     + ++        +       A  I   I+  I          
Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  I            I           D   IKD+M+  R 
Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMSYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481
           + +  D +S   ++ +P        I  F+     +    +             K     
Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +   + + E+I  A+  +  +    IL          +    E     + LDEFL  T +
Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521

Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +   + +    + +   L +    + +     N ++V +MT+H AKGLE PVVFLV   
Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                           S  EE  RL YVG
Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607

Query: 655 MTRASDQLIIC 665
           +TRA  QL + 
Sbjct: 608 ITRAKKQLYLT 618


>gi|256839771|ref|ZP_05545280.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13]
 gi|256738701|gb|EEU52026.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13]
          Length = 778

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 112/697 (16%), Positives = 206/697 (29%), Gaps = 131/697 (18%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150
           +L   Q      ++   TY  ++     +         L + +   Y+    +   +DF+
Sbjct: 136 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFD 195

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN L +       +  K      ++L+DE QDT+  Q  +++ L E         
Sbjct: 196 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 243

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  VGD+ QSIYSF GA    +L+ K +             I +L  ++RST +I
Sbjct: 244 -RHGHICVVGDDAQSIYSFRGANIDNILQFKNLY--------TGCRIFKLERNYRSTQNI 294

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + +                                         + +   +   +T
Sbjct: 295 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGNKVSVFT 327

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           SY D     +        +A  I+ M         G        D  +L R    + ++ 
Sbjct: 328 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 371

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD+++  R I++  D+ +   ++  P     +
Sbjct: 372 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRLIVNPHDEEALKRIINYPTRGIGD 427

Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             + K+         +++       EY     N    K       I   I   +  S  +
Sbjct: 428 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 487

Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553
             TL++               E     + L E L            E     ++ + ++E
Sbjct: 488 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 547

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +             N ++V +MTVH AKGLE   VF+V     +F     K         
Sbjct: 548 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 600

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL YV +TRA    ++    +    
Sbjct: 601 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 632

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K++  T    + D    D +   +      +     A E        +P  +   ++  
Sbjct: 633 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDD 689

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                            +      + S       + L
Sbjct: 690 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDLSGL 726


>gi|289577825|ref|YP_003476452.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9]
 gi|289527538|gb|ADD01890.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9]
          Length = 711

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 104/555 (18%), Positives = 188/555 (33%), Gaps = 112/555 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+D+II T +L K+      +     ++  +I++DE QDT++ Q+  +  L + +
Sbjct: 183 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNMPQYHFVNMLAQKY 239

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     R L  VGD+ QSIY + GA+   +L  ++   +          +I+L  +
Sbjct: 240 ----------RNLCVVGDDDQSIYGWRGADVGNILNFEKDYPE--------AKVIKLEQN 281

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   + V       +  +                     LW        +   
Sbjct: 282 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEQ 313

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++       +   +          +   I N+   +             +D  +L R  
Sbjct: 314 GEKIILCELENEREEAE-------FVIQEIINLKERENR---------SFRDFAILYRTN 357

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +              +I           D   IKD++A  R +++  DD+SF  ++  
Sbjct: 358 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 413

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500
           P        I  +      +  +++  I        +K       ++I ELI      + 
Sbjct: 414 PKRGIGAATIEALEATASEKDTSLFFAIDNAKVSQRAKNSLLEFKEFILELIDKKDTMTV 473

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556
            +    IL      ++       +     + L+EFLN     E+ +   SL+  +S +  
Sbjct: 474 SEVIKYILEETGYIEELKREESEQAEGRIENLNEFLNAAYEFEESSEDKSLEAFLSGITL 533

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                          V +MT+H+AKGLE PVVF+V     VF                  
Sbjct: 534 VSDIDL--AGEIGESVVLMTLHSAKGLEFPVVFMVGMEEGVFPS---------------- 575

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   +   EE  RL YVG+TR+ ++L +      +   KS
Sbjct: 576 ------------------FKSFTDEHELEEERRLCYVGITRSKEKLYLTYARRRNLYGKS 617

Query: 677 NQRTWYDMVYDSFHN 691
              T+   + +    
Sbjct: 618 QYGTYSRFISEIPER 632


>gi|313903519|ref|ZP_07836910.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM
           13965]
 gi|313466340|gb|EFR61863.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM
           13965]
          Length = 791

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 101/596 (16%), Positives = 181/596 (30%), Gaps = 115/596 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A Y++  ++N  +DF+DL++    LL   + +  +     +   HIL+DE QDT+
Sbjct: 168 VAMVYAAYQQRLERNGAMDFDDLLMQAVRLL---EEAPDVLAYYQRRFVHILVDEYQDTN 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++R L              R LF VGD  QS+Y + GA+   +LR +        
Sbjct: 225 HAQYRLLRLLAA----------GHRNLFVVGDPDQSVYRWRGADITNILRFEEDYP---- 270

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L L++RSTA IL     V       +     S                  
Sbjct: 271 ----DARVVRLELNYRSTASILGAAQAVIEHNTQRKEKQLRSVH---------------- 310

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                           +       D   +       A  +A  +  +             
Sbjct: 311 ------------GEGARVVVFGAADEHDE-------AWFVAREMERLHAEGH-------- 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  ++ VL R    + ++            I           +   +KD++A  R  +
Sbjct: 344 --EYGEMAVLYRTHAQSRVVEETL----LRRGIPYRIVGGLKFYERKEVKDILAYLRLAV 397

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISKFQ 482
           + ED +S   ++  P     E  + ++                             +   
Sbjct: 398 NPEDRISLRRVINVPRRGIGEATLARLEAYLDREGAGLLEALAAAETIPGITRPQAAALL 457

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539
                I +L   A+    +D   L L     R+        + +   + L E L+     
Sbjct: 458 AFGGVIADLRAAAENRPAYDVIALALERTGYREMLEQEQTPDAMTRLENLKELLSVARDF 517

Query: 540 EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E+        L+  L +    +           V +MT+H+AKGLE  VVF+      VF
Sbjct: 518 ERQRGPGDAPLVDFLAEVALVSDVDQLEEGARAVSLMTLHSAKGLEFDVVFITGMEEGVF 577

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                            EE  RL YVGMTRA
Sbjct: 578 PHSRSLDDP----------------------------------QELEEERRLCYVGMTRA 603

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
             +L +C     +    + ++     + ++       + +         +     W
Sbjct: 604 RQRLYLCFTRQRTLFGATRRQVPSRFLEEADERYLEWQGLPPGGGDPDLDEEEPLW 659


>gi|154487471|ref|ZP_02028878.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis
           L2-32]
 gi|154083989|gb|EDN83034.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis
           L2-32]
          Length = 896

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 119/726 (16%), Positives = 221/726 (30%), Gaps = 123/726 (16%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P   +  +S  +      +      I      L+         +  
Sbjct: 87  AAAEMRERLVTLVGPEAEHMWISTFHSACVRILRRDGKEI-----GLKSGFSIYDTADS- 140

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR-DRFNTYKMFKSTLA 125
             L            K    + +  K  D K  L   +D+  K   D     + ++ +  
Sbjct: 141 ERLVKLIAADLNIDTKRYTPRMLLGKISDCKNALVSWKDQLKKANCDYIPGQRGYQVSAG 200

Query: 126 SL-TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            +  L   + A Y+        +DF+DLI+ T +LL+       +         +I +DE
Sbjct: 201 DVDELVAVVYAEYQHRLALANAVDFDDLIMRTVELLQT---CPQVSEYYRHRFRYIFVDE 257

Query: 185 VQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            QDT+  Q+ ++R L+        D          P  +  VGD  QSIY+F GA+ + +
Sbjct: 258 YQDTNHAQYVLVRELSGIDSDEQPDPQARGAGRVGPSWITVVGDSDQSIYAFRGADIRNI 317

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              ++               I L  ++RST  IL   + V +  EN +            
Sbjct: 318 QDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIAKNENRKPKK--------- 360

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                       LW  +                          +A   A  IA  I+ + 
Sbjct: 361 ------------LWTALGQGDKIVGYAA--------------DNAQQEAGWIANEIARIH 394

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
             +          +  +DI ++ R    +  +         +  +           +   
Sbjct: 395 TEE---------DVAYRDIAIMYRANAQSRSLEEAM----INANLPYQLVGGTKFYERRE 441

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKFAN- 475
           +KD +A  + I++  D+++   +L  P                     T +E I+     
Sbjct: 442 VKDAIAYLQAIVNPADNVNVRRILNVPKRGLGARAEGLVAGYADAHGLTFFESIEHMDQI 501

Query: 476 -----CGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
                            +HEL   A      P +    +L      ++       +    
Sbjct: 502 EGMTGRTTKPLGAFRDLMHELADFAKEHDSKPSEVVAEVLDKSGLLEELQRSEDPQDASR 561

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGL 583
           +D L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKGL
Sbjct: 562 VDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGEGEDSGKVTMMTLHTAKGL 621

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P VFL       F H+                                        S 
Sbjct: 622 EYPYVFLTGMEQGTFPHQ----------------------------------RAMEDTSE 647

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             E  RL YVG+TRA  +L + + +  +   ++N       + +        K+ +    
Sbjct: 648 LSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANDMMPSQFLDEIPDELIDWKRREAGVE 707

Query: 704 INKDEW 709
             +  W
Sbjct: 708 RMRASW 713


>gi|309803805|ref|ZP_07697890.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           11V1-d]
 gi|312873066|ref|ZP_07733125.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1]
 gi|308164039|gb|EFO66301.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           11V1-d]
 gi|311091299|gb|EFQ49684.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1]
          Length = 742

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E + + L          ++ + +L         ++  +   +            
Sbjct: 66  AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 L ++   + NI +++ +     L   +  ++++ +   + +      +      
Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y++  + +C++DF+DLI+ T  L K       + +    +  +IL+DE QD
Sbjct: 172 ---AIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+   L +            + +  VGD  QSIY + GA  + +L  ++  +  
Sbjct: 226 TNQAQYELCHLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I+L  ++RST  IL   + V    +N +                      
Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +     + ++        +       A  I   I+  I          
Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  I            I           D   IKD+MA  R 
Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481
           + +  D +S   ++ +P        I  F+     +    +             K     
Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +   + + E+I  A+  +  +    IL          +    E     + LDEFL  T +
Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521

Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +   + +    + +   L +    + +     N ++V +MT+H AKGLE PVVFLV   
Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                           S  EE  RL YVG
Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607

Query: 655 MTRASDQLIIC 665
           +TRA  QL + 
Sbjct: 608 ITRAKKQLYLT 618


>gi|229826175|ref|ZP_04452244.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC
           49176]
 gi|229789045|gb|EEP25159.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC
           49176]
          Length = 768

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 100/578 (17%), Positives = 200/578 (34%), Gaps = 109/578 (18%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   + + YE+  K N  LDF+D+++ T +L +             +   +IL+DE QDT
Sbjct: 168 VYARVYSEYEKRMKNNNALDFDDILVKTVELFQTD---KDTLEYYQRRFRYILVDEYQDT 224

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +++Q+++++ L                L  VGD+ QSIY F GA+ + +L  ++I     
Sbjct: 225 NIVQFKLLKLLANYV---NEDGEIENNLCVVGDDDQSIYKFRGADIRNILNFEKIYPNAL 281

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +I+L  ++RST +IL   + V S  +  +                       
Sbjct: 282 --------VIKLEENYRSTGNILEAANGVISNNKERKDKR-------------------- 313

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW        S+      S+ +Y     +       A  +A T+   +           
Sbjct: 314 -LW-------TSKEGGASISYKTYDTGERE-------ANGVANTVLRTVNEG-------- 350

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              +  DI VL R    +  I            I               IKD++A  + I
Sbjct: 351 -KAKYSDIAVLYRTNAQSRAIEEKF----IYSNIPYKLYGGTNFYSRKEIKDILAYLKTI 405

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA-----NCGISKFQ 482
            + +DD     +L  P          KI      +  + +E   +       +  ++K +
Sbjct: 406 NNPKDDTQVRRILNVPKRGIGSATEDKIADYALEKEISFFEACMRVQSIPGLSRAVAKVE 465

Query: 483 HVIKYI-HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
             + +I  ++               ++      ++      +E     + ++E +N    
Sbjct: 466 KFVAFIGAKIREFKDTVCMKAEVEALIEEIGYIEELKLEGTDEAQGRIENIEELINKVAI 525

Query: 539 NEQNSYSS----LQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDT 593
            E  +  +    L   ++++        +     + ++V +MT+H+AKGLE  +VF+V  
Sbjct: 526 FELGNQDAGDIKLGNFLADVSLATDADNKDSENKDADKVTLMTLHSAKGLEFKIVFIVGM 585

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F  +                                  +  + +S  EE  RL YV
Sbjct: 586 EEGLFPSRMC--------------------------------LFAMDESELEEERRLCYV 613

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           G+TRA ++L +   ++               + +   +
Sbjct: 614 GITRAMEKLYLSNAASRMLRGDVQWNAPSRFIGEIPEH 651


>gi|325479235|gb|EGC82331.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 731

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/565 (17%), Positives = 182/565 (32%), Gaps = 118/565 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YEE K     LDF+DLI     L  K   +        ++  ++ +DE QDT+  
Sbjct: 169 EIYKKYEEKKFYYNALDFDDLIDKVLYLFSKDIET---LKFYQEKFQYVFVDEYQDTNNS 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E+I+  +               +  VGD  QSIYSF GA+   +L  ++         
Sbjct: 226 QYELIKYFSGF----------HNNITVVGDADQSIYSFRGADISNILNFEKDF------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +   +I+L  ++RST  IL   + +       +  +  +      +             
Sbjct: 269 -KDADVIKLEQNYRSTDKILDTANVLIENNSERKDKNLWTDNKNGSKPIYRS-------- 319

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                       +  S  A+ +   I  +            +  
Sbjct: 320 ---------------------------TNVESEEAKFVLDNIKEL----------TYQGY 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            AKD  +L R    +     +         I+          D   IKDL++  + I++ 
Sbjct: 343 DAKDFAILYRTNAQSRSFEEIL----MKNLINYKVIGGLKFYDRKEIKDLVSYLKIIVNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484
           +DDL+   ++  P        I ++ +          +   + E+     +         
Sbjct: 399 KDDLALKRIINEPKRGIGNKSIAELESISSLHEISMLDLIRLDEFRPLLNDRLKKLADKF 458

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
              + ++    +     D    +L      +   + +  E    ID ++EF++     E+
Sbjct: 459 YMPLKDIFDNIEKYKIVDLINEVLDKSGYLKMLETSYSVEDRSRIDNINEFISSAAEYEE 518

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +      +   LE          + + +  V +MT+H AKGLE P+VF+V     +F  
Sbjct: 519 ENSDD--TIFDYLENLSLLSDLDKTEDKDNSVSLMTMHAAKGLEFPIVFVVGLDEGLFPG 576

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                       +   EE  RL YVG+TRA +
Sbjct: 577 KRSID-----------------------------------EGNVEEERRLFYVGITRARE 601

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMV 685
           +L +    +  N  K         V
Sbjct: 602 KLFLTSSKSRRNYGKPIFYKPSRFV 626


>gi|56477926|ref|YP_159515.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1]
 gi|56313969|emb|CAI08614.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 740

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 113/693 (16%), Positives = 218/693 (31%), Gaps = 116/693 (16%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L S     +    K ++ + +N        +  + Q      ++
Sbjct: 100 LRAHHRDAGLPQLFQILDSG---DQLAAIKRLL-KALNVDDEKFPPR--ELQHFINGQKE 153

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   ++          L   YE   ++  V+DF +L++ T +LL++ +    IR  
Sbjct: 154 AGLRPHAVEAWDDYTRRRVELYIEYESQCQRESVVDFAELLLRTYELLERNE---PIRKH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             Q   HIL+DE QDT+ +Q+  ++ L +              LF VGD+ QSIY F GA
Sbjct: 211 YQQRFRHILVDEFQDTNRLQYRWLKLLAD------TGRDGAAKLFCVGDDDQSIYRFRGA 264

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +   +   +R             ++I L  ++RS  +IL   + +        G +    
Sbjct: 265 DVGNMRDFEREFH--------VANVIRLEQNYRSHGNILDAANAIIRHNAGRLGKN---- 312

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW +  +    +                        AR I   
Sbjct: 313 -----------------LWTERGAGEPIRVFEACGDLD--------------EARWIVDE 341

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +    I +L R    + ++            IS         
Sbjct: 342 IQSLVRDG----------MSRSGIALLYRSNAQSRVLEHQL----FSSGISYRVYGGLRF 387

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471
            +   IK  +A  R I + +DD +F  ++  P        I  +    R    ++Y  + 
Sbjct: 388 FERQEIKHALAYLRLIANPDDDTAFSRVVNFPTRGIGARSIEALQDAARTWNSSLYAAVP 447

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLD 530
             A    +     ++ + +L          +    +L     R  F +   G E ++ LD
Sbjct: 448 HVAGKPGTVLAQFVRLVEDLRRDTAKLPLPELVDHVLDVSGLRNHFRNEKEGQERLENLD 507

Query: 531 EFLNFTLRN-------EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKG 582
           E +N                  +   L   L        +    A  + V++MTVH++KG
Sbjct: 508 ELINAAANFVAEAGVQADAQDMAHALLADFLAHASLEAGEHQADAGSDAVQLMTVHSSKG 567

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   VFL      +F H++                                    ++  
Sbjct: 568 LEFDAVFLSGLEEGLFPHENS----------------------------------IMETE 593

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             EE  RL+YV +TRA  +L +    +     ++        + +      +        
Sbjct: 594 GLEEERRLMYVAVTRARQRLYLSFAQSRMLHGQTRYNLRSRFLEEIPEELTKWLSPPNPR 653

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
           +          +            E+ + +  D
Sbjct: 654 TSAVRSGFGGYYQPSRGGVVAKAPEQPVSRSRD 686


>gi|297544110|ref|YP_003676412.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841885|gb|ADH60401.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 711

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 104/555 (18%), Positives = 188/555 (33%), Gaps = 112/555 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+D+II T +L K+      +     ++  +I++DE QDT++ Q+  +  L + +
Sbjct: 183 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNMPQYHFVNMLAQKY 239

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     R L  VGD+ QSIY + GA+   +L  ++   +          +I+L  +
Sbjct: 240 ----------RNLCVVGDDDQSIYGWRGADVGNILNFEKDYPE--------AKVIKLEQN 281

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   + V       +  +                     LW        +   
Sbjct: 282 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEQ 313

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++       +   +          +   I N+   +             +D  +L R  
Sbjct: 314 GEKIILCELENEREEAE-------FVIQEIINLKERENR---------SFRDFAILYRTN 357

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +              +I           D   IKD++A  R +++  DD+SF  ++  
Sbjct: 358 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 413

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500
           P        I  +      +  +++  I        +K       ++I ELI      + 
Sbjct: 414 PKRGIGAATIEALEATALEKDTSLFFAIDNAKVSQRAKNSLLEFKEFILELIDKKDTMTV 473

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556
            +    IL      ++       +     + L+EFLN     E+ +   SL+  +S +  
Sbjct: 474 SEVIKYILEETGYIEELKREESEQAEGRIENLNEFLNAAYEFEESSEDKSLEAFLSGITL 533

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                          V +MT+H+AKGLE PVVF+V     VF                  
Sbjct: 534 VSDIDL--AGEIGESVVLMTLHSAKGLEFPVVFMVGMEEGVFPS---------------- 575

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   +   EE  RL YVG+TR+ ++L +      +   KS
Sbjct: 576 ------------------FKSFTDEHELEEERRLCYVGITRSKEKLYLTYARRRNLYGKS 617

Query: 677 NQRTWYDMVYDSFHN 691
              T+   + +    
Sbjct: 618 QYGTYSRFISEIPER 632


>gi|91201897|emb|CAJ74957.1| similar to ATP-dependent DNA helicase subunit AddA [Candidatus
            Kuenenia stuttgartiensis]
          Length = 1198

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 146/895 (16%), Positives = 288/895 (32%), Gaps = 87/895 (9%)

Query: 37   LSMETGNPTILKKAQTLQQASQT-----QCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91
              +        K    LQ+                S L   F       +      ++  
Sbjct: 273  ALLLKCGKPDNKLLLQLQEFLTIFNELKTQGFHYLSSLHYNFGKTISKAKSGWEEADVL- 331

Query: 92   KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
                     +    +   +  +         T A   L       + +       + F+ 
Sbjct: 332  -------VAQDIVKKCRILLRKLQRVDESFITTAL-NLVLPFCKTFRQTYLSQGYISFDG 383

Query: 152  LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE----DFFVGK 207
            L+    +LL+     + IR  + +  + IL+DE QDT  IQ+++I  L+E          
Sbjct: 384  LLTLARNLLQNNAYRS-IRTSLKKNFSAILVDEFQDTDPIQYDIILFLSEMVNHHSDTIH 442

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                 P  LF VGD KQSIYSF  A+ +         +          + + L  +FRS 
Sbjct: 443  GIPLEPGKLFIVGDPKQSIYSFRRADIE-------AYEHVVKQICNNEAPLSLLENFRSH 495

Query: 268  ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            + I+  V+ +F                ++           + +  + +     Q      
Sbjct: 496  SGIVNAVNDLF------GEKIITEQQGLQ--------PKYIPIHAKRIQSDPFQRIEIIS 541

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMI----GTDTIFSNGKKRVIQAKDILVLVRKR 383
               +  + L  E++    A  IA  I N +    G DT         ++ KDI +L+R  
Sbjct: 542  VSDTNGEELTAEAAREAEADWIAKWIKNNVFYDNGGDTSADAATSYKLKYKDIALLLRSF 601

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                      +     + I  +            + D M L R I +  D ++ V  L+S
Sbjct: 602  TQIRPYVESFKE----HDIPFIAEGEKYFYTTQEVIDFMNLLRTIENPYDTIALVGTLRS 657

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            P    ++++I+ +   +      Y           +       ++ +    ++       
Sbjct: 658  PFAGLTDNEIYLL---KINDLLDYRKTISDNIDIDATIGDFYSFLRKYNVRSRIIPVSHL 714

Query: 504  FTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQY 557
             + I+   +       +  G + +  L +F     + EQ    SL+  I+ +     E  
Sbjct: 715  ISEIINDPRFAGITASAWQGEQKLANLKKFYRTACKLEQIQGISLKHFINNMKKYIDEAR 774

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                        + V+I+T+H +KGLE PVV L +   +                    G
Sbjct: 775  EEGESPLSDETLDVVKILTIHKSKGLEFPVVILGNLHGEAKKENETLDSVAFDWNTSTTG 834

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK--- 674
            I +   + + RN     L   + + T EE  R+LYV MTRA ++LI+      +++    
Sbjct: 835  IVLGKGEQQLRNLQSIILENKINERTWEEEKRVLYVAMTRAKERLILTGALKDNDKSYIG 894

Query: 675  --KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
                +    YD+  ++          K+    ++     + ++      +    +     
Sbjct: 895  LIMKSLSDAYDISLNNEPETPSGHVRKIVFGNSEIFLENFNYTGARRFVSKTAEKTWDID 954

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK-----------GKTNLESLLSDNQTFN 781
                 +I       +  +  +P   +PS +  +            K    + +       
Sbjct: 955  WNSFVRIWNDRKQSMFAETEKPLFTSPSALSEEISPVHYETPTHNKHINSAEIQQEYAAA 1014

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MT 838
             G + H++L+         +      Y    + +       +L  +I  L++      +T
Sbjct: 1015 IGSLCHQILEKWDF-----QGTLQALYDLITSSVTIHFTNASLHHTIIHLIKTEAVTILT 1069

Query: 839  TAMSCDSYSEVSV------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
                  +Y+E+           I    +  I+ G ID I   +  I I +YKT +
Sbjct: 1070 AFFHSKAYNELKNARILGREIPILLHWEGQIMRGTIDIIYEFENQIIIADYKTDY 1124


>gi|223986797|ref|ZP_03636779.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM
           12042]
 gi|223961230|gb|EEF65760.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM
           12042]
          Length = 721

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/539 (17%), Positives = 177/539 (32%), Gaps = 109/539 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +  +Y   ++    LDF+DL++ T  + ++    A I+ K  Q  ++I +DE QD   
Sbjct: 170 AKVYEYYVNRQQAIYALDFDDLLLYTVRMFRQ---FAEIQAKWVQRFHYIHVDEFQDIDK 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+++I+ L  +            +++ VGD  Q+IY++ GA+   ++  ++  Q     
Sbjct: 227 IQYDLIQLLAGND----------NSVYVVGDPDQTIYTWRGADVNIIMNFEKDYQ----- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST  IL   + +     N       ++       +     G    
Sbjct: 272 ---PCETIVLNENYRSTPSILNGANALIHNNRNRVEKDLFTSRPDNGAITHYSSAG---- 324

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                              A  IA  I+ +              
Sbjct: 325 -------------------------------EEYEATWIACKINELHKQGQ--------- 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + +D  +L R    +  +         + +I  V        +   IKD +   R +  
Sbjct: 345 -RYRDCAILYRSNYLSRALEKAM----IEQRIPYVIYGGIKFYERAEIKDALCYLRMVCG 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIK 486
             D L+ + ++  P        +  I  +  ET      + +       K Q    + +K
Sbjct: 400 SND-LALMRIINVPRRGLGNKTMDTIVQRARETGKTMYEVIRDEKVVSGKAQTTIDNFVK 458

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            + +  ++A          +IL     R    +   NE ++ L E +        N   S
Sbjct: 459 MVEKWKNLAPSTPISRLLEMILLDSGYRSMLEADKENERLENLKELITDIESYTVNYPDS 518

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
              L   L+       +      + V++MTVH AKGLE   VF+      +F +      
Sbjct: 519 --SLEEYLQLVSLYGDKGAEDGGDHVQLMTVHAAKGLEFDTVFVYGMSEGIFPNDR---- 572

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                        ++  +    EE  RL YV  TRA ++L + 
Sbjct: 573 ----------------------------AMQESQLKGLEEERRLAYVAFTRAQNKLYLT 603


>gi|319792357|ref|YP_004153997.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315594820|gb|ADU35886.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 808

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 106/582 (18%), Positives = 196/582 (33%), Gaps = 137/582 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YEE  ++  V+DF +L++ + +LL+  D    +R    +   HILIDE QDT+ +
Sbjct: 182 ELYQLYEEQCQREGVVDFGELMLRSYELLRDND---PVREHYQRRFRHILIDEFQDTNRL 238

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  I+ L+ +   G+ T +   ++ AVGD+ QSIY+F GA    +    R    +    
Sbjct: 239 QYAWIKMLSGNTVGGQFTPNPNNSVIAVGDDDQSIYAFRGARVGNMADFVREFDVQ---- 294

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  ++RS ++IL   +++ S  +   G +                       
Sbjct: 295 ----HQIKLEQNYRSYSNILDSANELISHNKKRLGKNL---------------------- 328

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                + D         + S  D           A+ +   +  ++              
Sbjct: 329 -----RTDQGPGEPVRVYESPTDLAE--------AQWMVEEMRQLVRDG----------F 365

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             K+I VL R    + +I         +  +           +   IK  +A  R + ++
Sbjct: 366 DRKEIAVLYRSNAQSRVIETAL----FNASVPYRVYGGLRFFERAEIKHALAYLRLLENK 421

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
           +DD SF+ ++  P        +  +    R    ++++ +        +     +  I  
Sbjct: 422 DDDTSFLRVVNFPPRGIGARTLETLQDAARAAGRSLHDAVSVVGGKAGANLTGFVAKIDV 481

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN---------- 539
           L    Q  S  +   L+L      + + + R G + ++ LDE +N               
Sbjct: 482 LREQTQGVSLREIIELVLDHSGLVEHYKADREGADRLENLDELVNAAESFVTQEGFGRDA 541

Query: 540 ------------------------------EQNSYSSLQELISELEQYPPTI-KRAHSAN 568
                                         +  +  +L  L + L             A 
Sbjct: 542 VALPVDELRQSPASQGIDPTRPVLDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAG 601

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V++MTVH AKGLE   VF+      +F H++                          
Sbjct: 602 QDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDF--------------------- 640

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                         + EE  RL+YV +TRA  +L +      
Sbjct: 641 -------------ESLEEERRLMYVAITRARKRLYLSHSQTR 669


>gi|312130397|ref|YP_003997737.1| uvrd/rep helicase [Leadbetterella byssophila DSM 17132]
 gi|311906943|gb|ADQ17384.1| UvrD/REP helicase [Leadbetterella byssophila DSM 17132]
          Length = 757

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 111/687 (16%), Positives = 216/687 (31%), Gaps = 121/687 (17%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +   A +     +   Y         +DF+DL+ NTN L +       +  K   +  
Sbjct: 163 AAEDIAAQMPELGRIYKTYALRCFSANAMDFDDLLFNTNVLFRDH---LDVLNKYQHKFR 219

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           H+++DE QDT++ Q+ + R L              + +  VGD+ QSIY+F GA  + +L
Sbjct: 220 HVMVDEFQDTNISQYLITRKLAA----------VSQNICVVGDDAQSIYAFRGANIQNIL 269

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             K+              +++L  ++RST +I+   + V +  +     +  S       
Sbjct: 270 NFKKDYP--------DLKVVKLEQNYRSTKNIVNAANSVIAKNKAQLEKNIFS------- 314

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                               D++   + E   +  D+           R IA+ I     
Sbjct: 315 --------------------DNEEGEKIEVIRAMSDNEEG--------RLIAHEI----- 341

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                  G+ R ++  D  +L R    +       R       I               I
Sbjct: 342 -----FEGRLRGLKNSDFAILYRTNAQSRAFEEALR----KIDIPYRIIGGLSFYQRKEI 392

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG 477
           KD++A  RF ++Q+D+ +F  ++ +P     +  + KI         +++  +       
Sbjct: 393 KDILAYLRFTVNQQDEEAFKRIINTPKRGIGDTSVAKIIVLASEHQTSIWNIVSNIQFYM 452

Query: 478 ISKFQHVIKYIHELI-----HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
             +  + +    +LI      + +    H     +        +       E     + +
Sbjct: 453 EGRTANAVAGFADLIKSYTVMMEEGKDAHTLAMHVAKTSGLLHELYMDKTVEGVARHENV 512

Query: 530 DEFLNFTLRN---EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            E LN        ++N   SL   +  +       +        +V +MT+H AKGLE  
Sbjct: 513 QELLNSIRSFVDNDENEDKSLSSFLQTVSLLTTADEDDDGDAE-KVTLMTIHGAKGLEFK 571

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F  + + K                                   +   EE
Sbjct: 572 HVFVVGLEENLFPSQMMLKS----------------------------------RDDLEE 597

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA  QL +          K         + +      R     +  +   
Sbjct: 598 ERRLFYVAITRAEKQLTLSYAQQRYTWGKLTYCEPSRFLEEIDSRYLRFGDKGIPQTFEP 657

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                 + +       P++R  +   L   Q   +        + ++   L       + 
Sbjct: 658 SFAPKKQATRPVVIGEPVKR-ASANALKPVQPPVQAHVPSADFEPSDTSKLKVGD-KVEH 715

Query: 767 KTNLESLLSDNQTFNRG-LIIHKLLQV 792
           +      +   + F+ G    H L + 
Sbjct: 716 QKFGFGEVKKLEAFS-GSTKAHILFER 741


>gi|298375530|ref|ZP_06985487.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19]
 gi|298268030|gb|EFI09686.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19]
          Length = 778

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 112/697 (16%), Positives = 206/697 (29%), Gaps = 131/697 (18%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150
           +L   Q      ++   TY  ++     +         L + +   Y+    +   +DF+
Sbjct: 136 RLGMVQSRISNAKNSLITYTAYEQNKELVESDMNAKVPLLREIYKRYQSRCLQAGAMDFD 195

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN L +       +  K      ++L+DE QDT+  Q  +++ L E         
Sbjct: 196 DLLLQTNILFRDHPA---VLEKYRNFFRYVLVDEYQDTNFAQHLIVQRLCE--------- 243

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  VGD+ QSIYSF GA    +L+ K +             I +L  ++RST +I
Sbjct: 244 -RHGHICVVGDDAQSIYSFRGANIDNILQFKNLY--------TGCRIFKLERNYRSTQNI 294

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + +                                         + +   +   +T
Sbjct: 295 VNAANSLIDKNTRQIPK---------------------------TVYSEKEAGNKVSVFT 327

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           SY D     +        +A  I+ M         G        D  +L R    + ++ 
Sbjct: 328 SYSDYEEGYT--------VAARINEMH--------GILGKFSYADFAILYRTNAQSRILE 371

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD+++  R I++  D+ +   ++  P     +
Sbjct: 372 EALR----KRGIPYKIYGGLSFYQRKEIKDVISYFRMIVNPHDEEALKRIINYPTRGIGD 427

Query: 451 DDIFKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             + K+         +++       EY     N    K       I   I   +  S  +
Sbjct: 428 TTVGKLVGAATEYGVSLWTVLQAPLEYSLPINNGTAKKLSDFRSLIEVFIEENKKLSAEE 487

Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISE 553
             TL++               E     + L E L            E     ++ + ++E
Sbjct: 488 LATLVVKRSGIVSDLFQDRSVEGVSKQENLQELLKGIAEFCEIRREEGMEQVAMSDFLAE 547

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +             N ++V +MTVH AKGLE   VF+V     +F     K         
Sbjct: 548 VSLLTDQD-NDKEENSDKVTMMTVHAAKGLEFTNVFVVGLEEDLFPSSLSKDNP------ 600

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL YV +TRA    ++    +    
Sbjct: 601 ----------------------------RAVEEERRLFYVAITRAEQNCVLSYAKSRYRN 632

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K++  T    + D    D +   +      +     A E        +P  +   ++  
Sbjct: 633 GKTDMCTPSRFLKDI---DAKYLDMPSDAGASDAFASARERYGRPAFASPFRQPRAVEDD 689

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                            +      + S       + L
Sbjct: 690 FVSPVKQAAQRQGHLTKLKNTMESSFSAAPATDLSGL 726


>gi|59711189|ref|YP_203965.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri ES114]
 gi|59479290|gb|AAW85077.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri ES114]
          Length = 1208

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 142/890 (15%), Positives = 284/890 (31%), Gaps = 145/890 (16%)

Query: 113  RFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                 +  +     L+LA        ++AK++   L F+DL+   +    +   +A +  
Sbjct: 321  DDFLAQSLEIKQPLLSLAIHRCRKTLQQAKEQKNWLSFDDLLTQLSQA-TENQDNALLLE 379

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            KI ++    LIDE QDT  +Q+ +  +L +D             LF +GD KQ+IY+F G
Sbjct: 380  KIREQYPVALIDEFQDTDPLQYSIFSTLYQD--------QPQCGLFMIGDPKQAIYAFRG 431

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED- 290
            A+    ++ +R          Q      L  ++RSTAD+++ V+++F   +      +D 
Sbjct: 432  ADIFTYIQARR----------QVVDHYTLDTNWRSTADMVSSVNRIFEHGKQPFLYDDDI 481

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF---DSLPQESSASILAR 347
                +++      Q              D+   P    W       + + + S   ++A 
Sbjct: 482  PFYPVKYNPVNAEQKSW---------ALDNHTQPAMTFWLQESKDGNPVNKTSYQRVMAE 532

Query: 348  RIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  I  ++     G+  + +  KK+ I+A DI VLVR  K+  L+      L      
Sbjct: 533  STAAQIQTILTGAQQGSAYLQNGEKKQAIKAGDIAVLVRTGKEGKLVRE---ALSKQGIA 589

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            SV  ++R  +      KD++ L +  ++  D  +    L S LF ++ D + +      +
Sbjct: 590  SVYLSNRDSVFSSPLAKDVLRLLQAAMTPTDARAVRSALASSLFAYTADQLHQFNVDEMQ 649

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                              ++  +          Q          I+  +   ++ ++  G
Sbjct: 650  ------------------WEQAVNEFRAYRKHWQQRGIMPMLHQIITQQGISERLLAENG 691

Query: 523  NEVI----DVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIM 575
             E        + E L  T +   + Y  L+ L   + +             +  N V+I+
Sbjct: 692  GERQLTDLLHIGELLQQTSQTLDSDYGLLRWLSDSISEPNGDSEEQTVRLESERNLVQIV 751

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE  +VFL          K  +               +    S          
Sbjct: 752  TIHKSKGLEYDLVFLPFVCLYRAVDKKGEVSFYDEDNRYSVLDLLKEDDSV--------- 802

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
             +  +K    E  RL+YV +TRA     I          KK         +       + 
Sbjct: 803  -EKAEKERLAEDLRLIYVALTRAVYACYIGMAPITKGISKKPPTGVHLSGLGYLIQQADE 861

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHP--------ENTPLEREETIKQLMDEQKIPKKLFSP 746
                +L   + K            P        +    E  E     + E        + 
Sbjct: 862  CNVEELQACLEKLIVGNSPMVIQSPQTIIDELYQEVQDEHIELYANKLIEPVKSNWWMTS 921

Query: 747  IKNDINE------------PYILNPSTIDTKGKTNLESL---LSDNQTFNRGLIIHKLLQ 791
                + +               ++ +      + +LE      +  +    G  +H L +
Sbjct: 922  YSGLVKQGNHHNDTSLELINLDIDSAEDKDDKELDLEPERTIFTFPRGARAGTFLHSLFE 981

Query: 792  VIFTLPEHKRKN---FITSYCTKNAKLWPAKEYKNLLLSITRLLENP------MMTTAMS 842
             +        +     I     K    + A+  + +   + R+L+ P       + +   
Sbjct: 982  EVEFTQPITSEENTQIIIKLLEKE--NYDAEWLEVVQTMMQRVLDCPLDGENLRLASKGP 1039

Query: 843  CDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISISQQN 877
                 E+     I      ++                         + G ID +   +  
Sbjct: 1040 TQRLVEMEFLLPIELLNSSLVNKTIAKHDEVSARAGELGFSTVSGMLKGFIDLVFEHEGK 1099

Query: 878  IFIFEYKTHHHVPQEI--------EHIPY-THIAQLSIYEKILKDSYPNK 918
             ++ ++K++H              E +    +  Q  +Y   L     ++
Sbjct: 1100 YYVLDWKSNHLGDSPECYGGESLVEAMRDHRYDFQYQLYALALHRFLKSR 1149


>gi|16800937|ref|NP_471205.1| ATP-dependent DNA helicase [Listeria innocua Clip11262]
 gi|16414372|emb|CAC97101.1| ATP-dependent DNA helicase [Listeria innocua Clip11262]
          Length = 731

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 102/567 (17%), Positives = 187/567 (32%), Gaps = 115/567 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F
Sbjct: 185 NQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF 241

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD  QSIY + GA+   ++  ++               I L  +
Sbjct: 242 ----------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYP--------SAKTILLEEN 283

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   ++V     N +  +                     LW        S   
Sbjct: 284 YRSTKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAE 315

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++  +        +       A  +   I   +   +             D  +L R  
Sbjct: 316 GKKIFYHKALTEKEE-------AAYVVMKIQEEVNNSSR---------PLSDFAILYRTN 359

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + ++            ++          D   IKD++A  R I + EDD+S   ++  
Sbjct: 360 AQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINV 415

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQF 497
           P        + K+         +++E + +                    +     +  F
Sbjct: 416 PKRGVGPGTLEKLNNVAAAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDF 475

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISE 553
            S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++
Sbjct: 476 LSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLLAFLTD 535

Query: 554 LEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L       K    +   +  V +MT+H+AKGLE PVVFLV     +F H           
Sbjct: 536 LALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------- 585

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++   EE  RL YVG+TRA ++L +    +  
Sbjct: 586 ------------------------RAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRM 621

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKI 698
              + +       + +   +   +   
Sbjct: 622 LYGRPSSNQESRFIGEIPRDLLELGNE 648


>gi|223932458|ref|ZP_03624460.1| ATP-dependent DNA helicase PcrA [Streptococcus suis 89/1591]
 gi|223898912|gb|EEF65271.1| ATP-dependent DNA helicase PcrA [Streptococcus suis 89/1591]
          Length = 759

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/589 (15%), Positives = 183/589 (31%), Gaps = 118/589 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 166 QIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPE---VLTYYQQKFQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPES 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST ++L   ++V     N +                      
Sbjct: 273 --------KVVLLEENYRSTKNVLQAANEVIENNRNRRPKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW                ++    D   +       A  +A  I  +           
Sbjct: 306 --LW-------TQNAQGDLITYYRARDENDE-------AIFVAGQIDQLHREGKA----- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 345 -----YKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNI 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + K+       + ++ E  Q               
Sbjct: 396 IANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPIKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
             +   ++ L +     +       +L          ++   E     + + EFL+ T  
Sbjct: 456 FDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQEFLSVTKN 515

Query: 539 NEQNSYS----SLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            ++         L  L   L +              +EV +MT+H AKGLE PVVFL+  
Sbjct: 516 FDEKDTEEEETGLDRLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLIGM 575

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF      +                                           RL YV
Sbjct: 576 EENVFPLSRAAEEEDELEEER----------------------------------RLAYV 601

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           G+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 602 GITRAEQTLYLTNANSRLLFGRTNYNQPSRFIREISSDLLDYQGLARPA 650


>gi|121587578|ref|ZP_01677344.1| DNA helicase II [Vibrio cholerae 2740-80]
 gi|229527306|ref|ZP_04416699.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)]
 gi|121548216|gb|EAX58286.1| DNA helicase II [Vibrio cholerae 2740-80]
 gi|229335314|gb|EEO00798.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)]
          Length = 723

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 118/690 (17%), Positives = 222/690 (32%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++ T +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRTLELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +  R             + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N         S     ++ I+ L         H      +      + +    G 
Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P+VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|311107257|ref|YP_003980110.1| DNA helicase II [Achromobacter xylosoxidans A8]
 gi|310761946|gb|ADP17395.1| DNA helicase II [Achromobacter xylosoxidans A8]
          Length = 764

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 114/673 (16%), Positives = 214/673 (31%), Gaps = 143/673 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L    +T +    K ++               +  Q      ++
Sbjct: 94  LRAHHRDAGLPQSFQILD---VTDQLAAIKRLMKANGVDDEKYPP---RDVQRFINGAKE 147

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   ++  A       +   YE    +  V+DF +L++   +LL +    A +R  
Sbjct: 148 EGLRPADVEAYDAHRRRLIEIYQLYEAQCLREGVVDFAELLLRAYELLSRN---APVREH 204

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   HIL+DE QDT+ +Q++ +R L                +FAVGD+ QSIY+F GA
Sbjct: 205 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------GGAAIFAVGDDDQSIYAFRGA 254

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R   +         ++I L  ++RS   IL   + +        G +    
Sbjct: 255 NVGNMADFERDYAR--------GTVIRLEQNYRSFGHILDSANALIGHNTGRLGKN---- 302

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW         Q + +          + ++ S  + A+ I   
Sbjct: 303 -----------------LW-------TEQGDGEPV-------RVIEQPSDGMEAQWIVDE 331

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I   ++           ++I VL R    + ++            I          
Sbjct: 332 IRSLIREGSLR----------REIAVLYRSNAQSRVLEHAI----FSAGIPYKVYGGLRF 377

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   IK  +A  R + +  DD S++ ++  P        + ++    R    ++Y  + 
Sbjct: 378 FERQEIKHALAYLRLMANPHDDTSWMRVVNFPTRGIGARTLEQLGDAARAHDTSLYAAVA 437

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530
                G S      + IH LI   +     +    +L A      + + R G E ++ L+
Sbjct: 438 LVPGKGGSNLAQFAQLIHRLIEETRDLPLPEMVEHMLEASGLNAHYKAEREGAERLENLN 497

Query: 531 EFLNFTLRNEQNS------------------------------YSSLQELISELEQYPPT 560
           E +                                           L  L + L      
Sbjct: 498 ELITAAAVFASEENYDGMPAGVVPEQDTASTLNAGVVDAPIVASDGLTPLAAFLSHAALE 557

Query: 561 I-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                     + V++MTVH AKGLE   VF+      +F H++                 
Sbjct: 558 AGDNQAQQGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENSV--------------- 602

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                              L+ S  EE  RL+YV +TRA  +L I    +     ++   
Sbjct: 603 -------------------LEASGLEEERRLMYVAITRARQRLYISLAQSRMLHGQTRYA 643

Query: 680 TWYDMVYDSFHND 692
                + +     
Sbjct: 644 MRSRFLDEIPEQH 656


>gi|306822880|ref|ZP_07456256.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC
           27679]
 gi|304553512|gb|EFM41423.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC
           27679]
          Length = 885

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 118/728 (16%), Positives = 222/728 (30%), Gaps = 124/728 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  +      +           ++      T   E   
Sbjct: 82  AAAEMRERLAALVGPEAERMWISTFHSACVRILRRDG--DQIGLKSGFSIYDTADSERLI 139

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK---MFKST 123
            L+ +          K    + I  K  D K  L   +D+       +   +        
Sbjct: 140 KLIGADLNID----LKRYTPRMILGKISDYKNSLISWKDQLKTYAADYRPGQRGYQLGRF 195

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   + + Y+    +   +DF+DLI+ T +L +    ++        +  +I +D
Sbjct: 196 DNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELFRTCPQASDY---YRHKFRYIFVD 252

Query: 184 EVQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L+        D          P  +  VGD  QSIY+F GA+ + 
Sbjct: 253 EYQDTNHAQYVLVRELSGIDSGEQADPHATGAGRVGPSWVTVVGDSDQSIYAFRGADIRN 312

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   +                I L  ++RST  IL   + V +  EN +           
Sbjct: 313 IQDFEEDFPN--------AKTIMLEQNYRSTQTILDAANAVIAKNENRKPKK-------- 356

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +                +  +       A   A  IA  I+ +
Sbjct: 357 -------------LWTAL-------GKGDPIIGYAADN-------AQQEAGYIASEITRL 389

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +          I   D+ ++ R    +  +         +  +           +  
Sbjct: 390 HTEE---------GIAYSDMAIMYRANAQSRSLEETM----INANLPYQLVGGTKFYERR 436

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD--IFKICTQRH-----ETETVYEY 469
            +KD +A  + I++  DD++   +L  P          +  +   RH     +     + 
Sbjct: 437 EVKDAIAYLQAIVNPADDVNMRRILNVPKRGLGARAEGLVAMYADRHGTTFFDGIEHLDQ 496

Query: 470 IQKFANCGISKFQHVIKYIHEL--IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524
           I+                +HEL     A    P +    +L      ++       +   
Sbjct: 497 IEGMTGRTAKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRSGLLEELQRSEDPQDAS 556

Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582
            +D L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKG
Sbjct: 557 RVDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHTAKG 616

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFL       F H                                         S
Sbjct: 617 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDTS 642

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E  RL YVG+TRA  +L + + +  +   ++N+      + +   +    K+ +   
Sbjct: 643 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPEDLIDWKRKEAGM 702

Query: 703 SINKDEWI 710
              +  W 
Sbjct: 703 ERMRGGWQ 710


>gi|296110659|ref|YP_003621040.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154]
 gi|295832190|gb|ADG40071.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154]
          Length = 749

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 106/693 (15%), Positives = 217/693 (31%), Gaps = 136/693 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC-IEE 64
           G    ++  L ++    +    V                 + ++   L      +     
Sbjct: 30  GAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAKEMRERISALLSEDVARDIWVS 89

Query: 65  RFSLLSSFFLTQKFT--------------PQKNIITQEINKKSPDLKEK-LKKSQDEFIK 109
            F  L+   L +                  QK ++ + I+  + D  +   +        
Sbjct: 90  TFHALAVRILRRDGENIGLSRNFTIIDTSAQKTLMKRVISDLNLDTNQYDPRTILGMISN 149

Query: 110 IRDRFNTYK--MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            ++     +    ++  A       +   Y++  K+   +DF+DLI+ T DL +      
Sbjct: 150 AKNDMLRPRDYAKQADNAFQETVAEIYTAYQQELKRAQSVDFDDLIMLTIDLFQSTPE-- 207

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +  +   +  ++ +DE QDT+  Q+ ++  L +            + L  VGD  QSIY
Sbjct: 208 -VLTRYQNQFEYLHVDEYQDTNDAQYTIVNLLAK----------RSQNLAVVGDADQSIY 256

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA    +L  ++               + L  ++RST +IL   + V +        
Sbjct: 257 GWRGANMNNILNFEKDYPT--------AHTVMLEQNYRSTQNILDAANAVINHNNER--- 305

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                  +  +       G   ++ +  ++ D                          A 
Sbjct: 306 -------VPKKLWTQNGKGDKIIYYRAQTERD-------------------------EAN 333

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   +  M   + +            D  VL R    +  +            +     
Sbjct: 334 FILSNVQKMREENNMA---------YSDFAVLYRTNAQSRNVEESL----VKANMPYTMV 380

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                 +   I D+M+    I + +++ +F  ++  P        + ++    +     Y
Sbjct: 381 GGHKFYERKEILDIMSYMNLITNPDNNAAFERVVNEPKRGLGATSLNRLRELANRLNVSY 440

Query: 468 -------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                  E   + +    SKF      +H+L   ++F +  +   L +     RQ    +
Sbjct: 441 MTAIDSIELAPEISTKAASKFLVFADMMHDLRQQSEFLNVTELAELAMTRSGYRQMLAEK 500

Query: 521 FGNE---VIDVLDEFLNFTLRNEQ----NSYSSLQELISEL-EQYPPTIKRAHSANHNEV 572
              +    ++ L+EFL+ T   ++    +   ++  +   L      T           V
Sbjct: 501 SDPDSQARLENLEEFLSVTKEFDEKYRADDPEAVDPMTDFLGSTALMTDLDDFEEGDGAV 560

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFL+     +F                                  
Sbjct: 561 TLMTLHAAKGLEFPVVFLIGMEEGIFPLSRSL---------------------------- 592

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                 + +   EE  RL YVG+TRA ++L + 
Sbjct: 593 ------MDEDLLEEERRLAYVGITRAKEKLFLT 619


>gi|325982026|ref|YP_004294428.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
 gi|325531545|gb|ADZ26266.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
          Length = 738

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 102/626 (16%), Positives = 200/626 (31%), Gaps = 120/626 (19%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   Q   + + F +L S     +    K I+ ++++        +  +        ++
Sbjct: 96  LRSHYQDAGLPQAFQILDSA---DQLALIKRIL-KDLSADDKKFPPRQVQWF--INNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                                   YE+   K   +DF +L++ + +LL + ++   +   
Sbjct: 150 SGLRAAYVTPDDVFSRHMLEFYQAYEQRCHKEGAVDFAELLLRSYELLSRNEI---LCQH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +  NHIL+DE QDT+ +Q++ ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YRERFNHILVDEFQDTNPLQYKWLKLLAGTGTKETAV------VFAVGDDDQSIYAFRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R              II+L  ++RS  +IL   + +        G +    
Sbjct: 261 YSGNMRDFERDF--------GITKIIKLEQNYRSHGNILDAANALIENNSERLGKN---- 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW                 + +  D           A  I   
Sbjct: 309 -----------------LW------TAEGRGEPLRVYNAPNDFDE--------AAFIVEE 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +  +   +          I   +I +L R    + ++         +  I          
Sbjct: 338 VKTLHAEE---------GIALSEIALLYRSNAQSRVLEHSL----FNAAIPYRVYGGMRF 384

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471
            D   IK  +A  R I + +DD + + ++  P        + ++    + +  +++    
Sbjct: 385 FDRQEIKHALAYLRLIANPDDDGALLRVINFPARGIGARSLEQLQDDAKAQGHSLWAAAL 444

Query: 472 KFANCGISKFQH----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SR 520
           +     +S  Q            +  I  +               +L   +    +   R
Sbjct: 445 QKCGGEVSLLQESHKSLKGVAKFVFLIMTMRQSCGELLLPQIVEYMLIHSELLVHYAKER 504

Query: 521 FGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
             +E ++ L+E +N            SL E ++              +  + +++MTVH 
Sbjct: 505 ESSERLENLNELINAATSFVHEIGNDSLTEFLAHASLEAGE--HQAGSGRDALQLMTVHA 562

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFL      +F H++                                     
Sbjct: 563 AKGLEFHTVFLSGLEEGLFPHENSLN---------------------------------- 588

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIIC 665
           + +   E  RL+YV MTRA  +L + 
Sbjct: 589 ESNGIAEERRLMYVAMTRARRRLYLS 614


>gi|325911371|ref|ZP_08173783.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D]
 gi|325476721|gb|EGC79875.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D]
          Length = 742

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E + + L          ++ + +L         ++  +   +            
Sbjct: 66  AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 L ++   + NI +++ +     L   +  ++++ +   + +      +      
Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y++  + +C++DF+DLI+ T  L K       + +    +  +IL+DE QD
Sbjct: 172 ---AIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+   L +            + +  VGD  QSIY + GA  + +L  ++  +  
Sbjct: 226 TNQAQYELCYLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I+L  ++RST  IL   + V    +N +                      
Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +     + ++        +       A  I   I+  I          
Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  I            I           D   IKD+MA  R 
Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481
           + +  D +S   ++ +P        I  F+     +    +             K     
Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +   + + E+I  A+  +  +    IL          +    E     + LDEFL  T +
Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521

Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +   + +    + +   L +    + +     N ++V +MT+H AKGLE PVVFLV   
Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                           S  EE  RL YVG
Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607

Query: 655 MTRASDQLIIC 665
           +TRA  QL + 
Sbjct: 608 ITRAKKQLYLT 618


>gi|171743075|ref|ZP_02918882.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC
           27678]
 gi|283455915|ref|YP_003360479.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
 gi|171278689|gb|EDT46350.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC
           27678]
 gi|283102549|gb|ADB09655.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
          Length = 885

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 119/728 (16%), Positives = 223/728 (30%), Gaps = 124/728 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  +      +           ++      T   E   
Sbjct: 82  AAAEMRERLAAIVGPEAERMWISTFHSACVRILRRDG--DQIGLKSGFSIYDTADSERLI 139

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK---MFKST 123
            L+ +          K    + I  K  D K  L   +D+       +   +        
Sbjct: 140 KLIGADLNID----LKRYTPRMILGKISDYKNSLISWKDQLKTYAADYRPGQRGYQLGRF 195

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   + + Y+    +   +DF+DLI+ T +LL+    ++        +  +I +D
Sbjct: 196 DNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELLRTCPQASDY---YRHKFRYIFVD 252

Query: 184 EVQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L+        D          P  +  VGD  QSIY+F GA+ + 
Sbjct: 253 EYQDTNHAQYVLVRELSGIDSGEQADPHATGAGRVGPSWVTVVGDSDQSIYAFRGADIRN 312

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   +                I L  ++RST  IL   + V +  EN +           
Sbjct: 313 IQDFEEDFPN--------AKTIMLEQNYRSTQTILDAANAVIAKNENRKPKK-------- 356

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +                +  +       A   A  IA  I+ +
Sbjct: 357 -------------LWTAL-------GKGDPIIGYAADN-------AQQEAGYIASEITRL 389

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +          I   D+ ++ R    +  +         +  +           +  
Sbjct: 390 HTEE---------GIAYSDMAIMYRANAQSRSLEEAM----INANLPYQLVGGTKFYERR 436

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD--IFKICTQRH-----ETETVYEY 469
            +KD +A  + I++  DD++   +L  P          +  +   RH     +     + 
Sbjct: 437 EVKDAIAYLQAIVNPADDVNMRRILNVPKRGLGARAEGLVAMYADRHGTTFFDGIEHLDQ 496

Query: 470 IQKFANCGISKFQHVIKYIHEL--IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524
           I+                +HEL     A    P +    +L      ++       +   
Sbjct: 497 IEGMTGRTAKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRSGLLEELQRSEDPQDAS 556

Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582
            +D L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKG
Sbjct: 557 RVDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHTAKG 616

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFL       F H                                         S
Sbjct: 617 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDTS 642

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E  RL YVG+TRA  +L + + +  +   ++N+      + +   +    K+ +   
Sbjct: 643 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPEDLIDWKRKEAGM 702

Query: 703 SINKDEWI 710
              +  W 
Sbjct: 703 ERMRGGWQ 710


>gi|309804689|ref|ZP_07698754.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           09V1-c]
 gi|309809370|ref|ZP_07703232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312873367|ref|ZP_07733418.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d]
 gi|308166081|gb|EFO68299.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV
           09V1-c]
 gi|308170281|gb|EFO72312.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311091051|gb|EFQ49444.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d]
          Length = 742

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E + + L          ++ + +L         ++  +   +            
Sbjct: 66  AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 L ++   + NI +++ +     L   +  ++++ +   + +      +      
Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y++  + +C++DF+DLI+ T  L K       + +    +  +IL+DE QD
Sbjct: 172 ---AIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+   L +            + +  VGD  QSIY + GA  + +L  ++  +  
Sbjct: 226 TNQAQYELCYLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I+L  ++RST  IL   + V    +N +                      
Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +     + ++        +       A  I   I+  I          
Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  I            I           D   IKD+MA  R 
Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481
           + +  D +S   ++ +P        I  F+     +    +             K     
Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +   + + E+I  A+  +  +    IL          +    E     + LDEFL  T +
Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521

Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +   + +    + +   L +    + +     N ++V +MT+H AKGLE PVVFLV   
Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                           S  EE  RL YVG
Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607

Query: 655 MTRASDQLIIC 665
           +TRA  QL + 
Sbjct: 608 ITRAKKQLYLT 618


>gi|86605998|ref|YP_474761.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab]
 gi|86554540|gb|ABC99498.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab]
          Length = 776

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 110/604 (18%), Positives = 194/604 (32%), Gaps = 103/604 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139
           K I+T+++N        +    +      +++  T    +    +    +   +   YE+
Sbjct: 154 KEIVTKQLNLDERKFDPR--SVRYAISNAKNQGWTPADLERHQPNFRGRILAQVYELYED 211

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
               N  LDF++LI     L ++ +    +     Q   HIL+DE QDT+  Q+E+IR L
Sbjct: 212 QLAANNALDFDNLIWIPVQLFRQNE---QVLAYWHQRFRHILVDEYQDTNRTQYELIRLL 268

Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
             +    ++    + R+LF VGD  QSIY F GA+   +L  +        +   + ++I
Sbjct: 269 ATNGETRRSEWDWTNRSLFVVGDADQSIYRFRGADFTILLEFQETFGDGLPDDDTR-TLI 327

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RSTA IL   + +              T    H                     
Sbjct: 328 KLEENYRSTATILQAANVLIEKNTERIDKILRPTRPPGH--------------------- 366

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                          D + +       A  +  TI  +   +              D  +
Sbjct: 367 -------PIVCYQAEDEMAE-------AEFVVNTIRRLHSQNPNS--------SWGDFAI 404

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +     +       + I           D   IKD++A  R +L+  D  S +
Sbjct: 405 LYRTNAQSRPFEEVL----LRWGIPYTVVGGLRFYDRKEIKDVLAYLRVVLNPADSFSLL 460

Query: 439 CMLKSPLFNFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHEL 491
            ++  P     +  + K+               +    +               + I   
Sbjct: 461 RIINVPRRGIGKSTLDKLSEAAAALNVPLWTILSDEASVTNLLGRSAKPVLQFAQLIQHW 520

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQN-SYSSL 547
                  S       +L      +   ++   E  +    + E  N   + E+     SL
Sbjct: 521 HRQMAQVSAAALLEGLLRDCGYLEDLKAQGTEEAEERIANVMELYNAARQFEEEQEDPSL 580

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           +  +S +                +V +MT+H +KGLE PVVFLV     +F +       
Sbjct: 581 EAFLSNVSLASDLDT--LQEGAEKVSLMTLHASKGLEFPVVFLVGLEQGLFPN------- 631

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                             +  EE  RL YVG+TRA +QL +C  
Sbjct: 632 ---------------------------FRALEDPAALEEERRLCYVGITRAREQLFVCHA 664

Query: 668 SNTS 671
           S   
Sbjct: 665 SERR 668


>gi|33592827|ref|NP_880471.1| DNA helicase II [Bordetella pertussis Tohama I]
 gi|33601161|ref|NP_888721.1| DNA helicase II [Bordetella bronchiseptica RB50]
 gi|33572475|emb|CAE42046.1| DNA helicase II [Bordetella pertussis Tohama I]
 gi|33575596|emb|CAE32674.1| DNA helicase II [Bordetella bronchiseptica RB50]
          Length = 766

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 107/718 (14%), Positives = 217/718 (30%), Gaps = 144/718 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +   T +    K ++               +  Q      ++
Sbjct: 94  LRAHHRDAGLPQAFQILDT---TDQLAAIKRLLKAGNIDDEKYPP---RDVQRFINGAKE 147

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   ++          +   YE   ++  V+DF +L++   +LL +    A +R  
Sbjct: 148 EGLRPGDVEAYDPHRRKLIEIYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 204

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   HIL+DE QDT+ +Q++ +R L            +   +FAVGD+ QSIY+F GA
Sbjct: 205 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------TGAAIFAVGDDDQSIYAFRGA 254

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R              +I L  ++RS   IL   + +        G +  + 
Sbjct: 255 NVGNMADFERDYAH--------GRVIRLEQNYRSYGHILDSANALIGHNTGRLGKNLWTE 306

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G+   V                             ++ S  + A+ +   
Sbjct: 307 QG-------EGEPVRV----------------------------IEQPSDGMEAQWLVDE 331

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  +I    +            +I VL R    + ++            I          
Sbjct: 332 IRALINDGRM----------RSEIAVLYRSNAQSRVLEHAL----FSVGIPYKVYGGLRF 377

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   IK  +A  R I +  DD S++ ++  P        + ++    R    +++  + 
Sbjct: 378 FERQEIKHALAYLRLIANPNDDTSWMRVVNFPTRGIGARTLEQLSDAARAHDTSLFGAVA 437

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
           +    G S      + I ++ H  +     +    ++ A   +  +   R G E ++ L+
Sbjct: 438 RVGGKGGSNLAQFAQLIGQMAHDTRELPLPELVDHVIEASGLKAHYQTEREGAERLENLN 497

Query: 531 EFLNFTLRNEQNS-------------------------------YSSLQELISELEQYPP 559
           E +                                            L  L + L     
Sbjct: 498 ELITAATVFAAEENFEGLPAGVVPDHDVSGALMPGVVDAPQPDTLGGLTPLAAFLSHAAL 557

Query: 560 TI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                      + V++MTVH AKGLE   VF+      +F H++                
Sbjct: 558 EAGDNQAQVGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENS--------------- 602

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                               ++ +  EE  RL+YV +TRA ++L +    +     ++  
Sbjct: 603 -------------------IMEPAGLEEERRLMYVAITRARERLYLSLAQSRMLHGQTRY 643

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                 + +      +    +           A    +   +    +   T       
Sbjct: 644 AMRSRFLEEIPEQHLKWLSPRAGLHQGGGFGGAAPAWSSRGDAFGRKPTGTAAPRQPR 701


>gi|33596606|ref|NP_884249.1| DNA helicase II [Bordetella parapertussis 12822]
 gi|33573307|emb|CAE37290.1| DNA helicase II [Bordetella parapertussis]
          Length = 766

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 107/718 (14%), Positives = 217/718 (30%), Gaps = 144/718 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +   T +    K ++               +  Q      ++
Sbjct: 94  LRAHHRDAGLPQAFQILDT---TDQLAAIKRLLKAGNIDDEKYPP---RDVQRFINGAKE 147

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   ++          +   YE   ++  V+DF +L++   +LL +    A +R  
Sbjct: 148 EGLRPGDVEAYDPHRRKLIEIYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 204

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   HIL+DE QDT+ +Q++ +R L            +   +FAVGD+ QSIY+F GA
Sbjct: 205 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------TGAAIFAVGDDDQSIYAFRGA 254

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R              +I L  ++RS   IL   + +        G +  + 
Sbjct: 255 NVGNMADFERDYAH--------GRVIRLEQNYRSYGHILDSANALIGHNTGRLGKNLWTE 306

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G+   V                             ++ S  + A+ +   
Sbjct: 307 QG-------EGEPVRV----------------------------IEQPSDGMEAQWLVDE 331

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  +I    +            +I VL R    + ++            I          
Sbjct: 332 IRALINDGRM----------RSEIAVLYRSNAQSRVLEHAL----FSVGIPYKVYGGLRF 377

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   IK  +A  R I +  DD S++ ++  P        + ++    R    +++  + 
Sbjct: 378 FERQEIKHALAYLRLIANPNDDTSWMRVVNFPTRGIGARTLEQLSDAARAHDTSLFGAVA 437

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
           +    G S      + I ++ H  +     +    ++ A   +  +   R G E ++ L+
Sbjct: 438 RVGGKGGSNLAQFAQLIGQMAHDTRELPLPELVDHVIEASGLKAHYQTEREGAERLENLN 497

Query: 531 EFLNFTLRNEQNS-------------------------------YSSLQELISELEQYPP 559
           E +                                            L  L + L     
Sbjct: 498 ELITAATVFAAEENFEGLPAGVVPDHDVSGALMPGVVDAPQPDTLGGLTPLAAFLSHAAL 557

Query: 560 TI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                      + V++MTVH AKGLE   VF+      +F H++                
Sbjct: 558 EAGDNQAQVGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENS--------------- 602

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                               ++ +  EE  RL+YV +TRA ++L +    +     ++  
Sbjct: 603 -------------------IMEPAGLEEERRLMYVAITRARERLYLSLAQSRMLHGQTRY 643

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                 + +      +    +           A    +   +    +   T       
Sbjct: 644 AMRSRFLEEIPEQHLKWLSPRAGLHQGGGFGGAASAWSSRGDAFGRKPTGTAAPRQPR 701


>gi|217969625|ref|YP_002354859.1| UvrD/REP helicase [Thauera sp. MZ1T]
 gi|217506952|gb|ACK53963.1| UvrD/REP helicase [Thauera sp. MZ1T]
          Length = 744

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 121/760 (15%), Positives = 235/760 (30%), Gaps = 126/760 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W +   QV                 +L +   +   S        
Sbjct: 28  GAGSGKTRVLTTRIAWLIQSGQVDPAGILAVTFTNKAAKEMLARLGAMLPVSTRGMWIGT 87

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F  L++  L             + + + +       L + L         ++ Q      
Sbjct: 88  FHGLANRLLRAHHRDAGLPQLFQILDSADQLAAIKRLLKTLNVDDEKFPPRELQHFINGQ 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           ++  N   + ++      L   L   YE   ++  V+DF +L++ +++LL++ ++   +R
Sbjct: 148 KEAGNRPHVVEAWDDYTRLRVQLYQEYEAQCQRESVVDFAELLLRSHELLERNEL---LR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               +   HIL+DE QDT+ +Q+  ++   ++             +F VGD+ QSIY F 
Sbjct: 205 RHYQRRFRHILVDEFQDTNRLQYRWLKLFADE------GREGGAAMFCVGDDDQSIYRFR 258

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GAE   +   +R  +          ++I L  ++RS A+IL   + +     N  G +  
Sbjct: 259 GAEVGNMRDFEREFR--------VNNVIRLEQNYRSHANILDAANAIILHNSNRLGKNLW 310

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G+   V                             +  + +  AR I 
Sbjct: 311 TDQG-------AGEPIRVF----------------------------EAYADADEARWIV 335

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  ++    +            +I +L R    + ++            I        
Sbjct: 336 EEIQALVRDGALR----------SEIALLYRSNAQSRVLEHQLFA----AGIPYRVYGGL 381

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IK  +A  R I + +DD SF  ++  P        +  +    R  + ++Y  
Sbjct: 382 RFFERQEIKHALAYLRLIANPDDDTSFARVVNFPTRGIGARSLEVLADAARTYSTSLYAT 441

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528
           +   +    S     ++ + EL          +    +L     R  + +   G E ++ 
Sbjct: 442 VPHLSGKPGSALAVFVRLVEELRRDTAGLPLPELVDHVLDLSGLRAHYKADKEGRERLEN 501

Query: 529 LDEFLNFTLRNEQNSYSSLQE--------LISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
           LDE +N        + +            L   L                + V++MTVH 
Sbjct: 502 LDELINAAANFLAEAQAQAGAGEAQPHALLADFLAHASLEAGDHQADQGADAVQLMTVHA 561

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE  VVFL      +F H++                                    L
Sbjct: 562 AKGLEFDVVFLSGLEEGLFPHENS----------------------------------IL 587

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           ++   EE  RL+YV +TRA ++L +    +     ++        + +      +     
Sbjct: 588 EQDGLEEERRLMYVAVTRARERLYLSFAQSRMLHGQTRYNLRSRFLEEIPAGLTKWLTPP 647

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
              S               P            Q       
Sbjct: 648 QPRSAAGGAMGGMGGGYFKPSAKSAVGGAAQVQRAPRPAF 687


>gi|49475840|ref|YP_033881.1| DNA helicase II [Bartonella henselae str. Houston-1]
 gi|49238648|emb|CAF27892.1| DNA helicase II [Bartonella henselae str. Houston-1]
          Length = 778

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 108/550 (19%), Positives = 182/550 (33%), Gaps = 108/550 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + L  +Y+   K     DF DL++++  + +       I      +  +IL+DE QDT
Sbjct: 209 MGRELYHNYQHRLKSLNACDFGDLLLHSISIFQHNPD---ILRDYHSKFRYILVDEYQDT 265

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+  +R L +              L  VGD+ QSIY + GA+   +LR ++      
Sbjct: 266 NTAQYLWLRLLAQQP------KGQHINLCCVGDDDQSIYGWRGAQVDNILRFEKDFP--- 316

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   II L  ++RST+ IL     + S  +   G +  S                 
Sbjct: 317 -----PAKIIRLERNYRSTSHILKTASHLISHNQGRLGKTLFSDQV-------------- 357

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                           ++    + +DS  +       AR I   I      D   ++   
Sbjct: 358 ------------NTEEEKVKIHAAWDSEEE-------ARAIGEEIERAQQADHSLNH--- 395

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  I +LVR              L     ++          + + I+D MA  R +
Sbjct: 396 -------IAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDAMAYLRVV 444

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKF 481
           +   DDL+F  ++ +P     +  +  +    R     ++          +      S  
Sbjct: 445 VQPADDLAFERIINTPKRGLGDATLRILYESARTRAIPLFFAAAEIIETDELKPKARSAL 504

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           + V++      ++ Q     +   +IL        ++     E    L+         EQ
Sbjct: 505 RSVVENFRRWQNMLQNTPHRELAEIILDDSGYTSMWLEDRSPEAPTRLENLKEMVRSMEQ 564

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 + L S LE     +   +  N + V IMT+H+AKGLE   VFL      +F H+
Sbjct: 565 -----FESLPSFLEHVALVMDAENDENTDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 619

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +S  EE  RL YVG+TRA   
Sbjct: 620 RSLD--------------------------------EGGRSGLEEERRLAYVGLTRAKKH 647

Query: 662 LIICKHSNTS 671
           L I   SN  
Sbjct: 648 LHIWFVSNRR 657


>gi|254819357|ref|ZP_05224358.1| ATP-dependent DNA helicase PcrA [Mycobacterium intracellulare ATCC
           13950]
          Length = 780

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 116/749 (15%), Positives = 210/749 (28%), Gaps = 141/749 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + +    +     +        +            + L         ++   
Sbjct: 77  AAAEMRERVVR---LVGNRARAMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRR 133

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L    D   K+ D          +    
Sbjct: 134 LLQMIGRDMGLDI-KRYSPRLLANAISNLKNELIDPADAVSKLTDD---------SDELS 183

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 184 RTVASVYGEYQRRLRAANALDFDDLIGETVAVLR---AFPQIAQHYRRRFRHVLVDEYQD 240

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHS---SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q+ ++R L           S    P  L  VGD  QSIY+F GA  + +   +R  
Sbjct: 241 TNHAQYVLVRELVGRGGTEAPASSDDVPPAELCVVGDADQSIYAFRGATIRNIEDFERDY 300

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                      + I L  ++RST +IL+  + V +     +                   
Sbjct: 301 P--------DATTILLEQNYRSTQNILSAANSVIARNSGRRDKR---------------- 336

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW        ++   +        +   +       AR +A  I  +        
Sbjct: 337 -----LW-------TAEGAGELIVGYVADNEHDE-------ARFVAEEIDALADKGE--- 374

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 I   D+ V  R    +  +  +         I           +   I+D++A 
Sbjct: 375 ------ITYNDVAVFYRTNNSSRSLEEVF----IRAGIPYKVVGGVRFYERKEIRDIVAY 424

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-------- 475
            R + +  D +S   +L +P     +     +     +   +  + +   A         
Sbjct: 425 LRVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNS 484

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
                    ++ + EL          D    +L     R++  S    +    +D L+E 
Sbjct: 485 RAEKAIAGFVELLDELRGRL-DDDLGDLVESVLERTGYRRELESSSDPQELARLDNLNEL 543

Query: 533 LNFTLRN-----------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VR 573
           ++                      E         L   LE+                 V 
Sbjct: 544 VSVAHEFSTDRANADALDESLHTPEDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVT 603

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE PVVF+      +F H                                 
Sbjct: 604 LMTLHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPT------------------------- 638

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                       E  RL YVG+TRA  +L + +    S+  +         + +      
Sbjct: 639 ---------ELSEERRLAYVGITRARRRLYLSRAIVRSSWGQPMLNPESRFLREIPQELI 689

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENT 722
             ++     S +        +       T
Sbjct: 690 DWRRTAPAPSFSAPVSGVGRFGPPRAAPT 718


>gi|312870767|ref|ZP_07730873.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a]
 gi|311093643|gb|EFQ51981.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a]
          Length = 742

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 114/671 (16%), Positives = 219/671 (32%), Gaps = 131/671 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E + + L          ++ + +L         ++  +   +            
Sbjct: 66  AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 L ++   + NI +++ +     L   +  ++++ +   + +      +      
Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y++  + +C++DF+DLI+ T  L K       + +    +  +IL+DE QD
Sbjct: 172 ---AIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+   L +            + +  VGD  QSIY + GA  + +L  ++  +  
Sbjct: 226 TNQAQYELCYLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I+L  ++RST  IL   + V    +N +                      
Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +     + ++        +       A  I   I+  I          
Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  I            I           D   IKD+MA  R 
Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481
           + +  D +S   ++ +P        I  F+     +    +             K     
Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +   + + E+I  A+  +  +    IL          +    E     + LDEFL  T +
Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHTIEADTRLENLDEFLTVTKQ 521

Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +   + +    + +   L +    + +     N ++V +MT+H AKGLE PVVFLV   
Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                           S  EE  RL YVG
Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607

Query: 655 MTRASDQLIIC 665
           +TRA  QL + 
Sbjct: 608 ITRAKKQLYLT 618


>gi|254291625|ref|ZP_04962414.1| DNA helicase II [Vibrio cholerae AM-19226]
 gi|150422482|gb|EDN14440.1| DNA helicase II [Vibrio cholerae AM-19226]
          Length = 723

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 116/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++   +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +  R             + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N         +     ++ I+ L         H      +      + +    G 
Sbjct: 441 SVGLLNDQVLTGRAANALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P+VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|256752858|ref|ZP_05493697.1| UvrD/REP helicase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748260|gb|EEU61325.1| UvrD/REP helicase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 644

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 103/555 (18%), Positives = 188/555 (33%), Gaps = 112/555 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+D+II T +L K+      +     ++  +I++DE QDT+  Q+  +  L + +
Sbjct: 116 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNTPQYHFVNMLAQKY 172

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     R L  VGD+ QSIY + GA+ K +L  ++              +I+L  +
Sbjct: 173 ----------RNLCVVGDDDQSIYGWRGADVKNILNFEKDYP--------DAKVIKLEQN 214

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   + V       +  +                     LW        +   
Sbjct: 215 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEQ 246

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++       +   +       A  +   I ++   +             +D  +L R  
Sbjct: 247 GEKIILCELDNEREE-------AEFVIQEIISLKERENR---------SFRDFAILYRTN 290

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +              +I           D   IKD++A  R +++  DD+SF  ++  
Sbjct: 291 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 346

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500
           P        I  +      +  +++  I        +K       ++I ELI      + 
Sbjct: 347 PKRGIGAATIEALEATALEKDTSLFFAIDDAKVSQRAKNSLLEFKEFILELIDKKDTMTV 406

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556
            +    IL      ++       +     + L+EFLN     E+ +   SL+  ++ +  
Sbjct: 407 SEVINYILEETGYVEELEKEESEQAEGRIENLNEFLNAAYEFEESSEDKSLEAFLAGITL 466

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                          V +MT+H+AKGLE PVVF+V     VF                  
Sbjct: 467 VSDIDL--AGEIGESVVLMTLHSAKGLEFPVVFMVGMEEGVFPS---------------- 508

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   +   EE  RL YVG+TR+ ++L +      +   KS
Sbjct: 509 ------------------FKSFTDEYELEEERRLCYVGITRSKEKLYLTYARRRNLYGKS 550

Query: 677 NQRTWYDMVYDSFHN 691
              ++   + +    
Sbjct: 551 QYSSYSRFISEIPER 565


>gi|189466065|ref|ZP_03014850.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM
           17393]
 gi|189434329|gb|EDV03314.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM
           17393]
          Length = 784

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 105/663 (15%), Positives = 203/663 (30%), Gaps = 121/663 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y +  ++   +DF+DL+  T  L +       +  +  ++  +IL+D
Sbjct: 170 AAKMPAIRDIYHRYWDRCRQADAMDFDDLLFYTFILFRDHPE---VLARYQEQFRYILVD 226

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  L +D           + +  VGD+ QSIYSF GA+   +L   +I
Sbjct: 227 EYQDTNYAQHSIVLQLAKD----------HQQVCVVGDDAQSIYSFRGADIDNILYFTKI 276

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E        S            
Sbjct: 277 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKEVFS------------ 316

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +   I+ +  ++   
Sbjct: 317 ---------------EKEKGEAIGVFQAYSDVEEGDI--------VVNKIAELRRSEH-- 351

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       +               IKD++A
Sbjct: 352 -------YPYSDFAILYRTNAQSRVFEEAMR----KRGMPYRIYGGLSFYQRKEIKDVIA 400

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI T       +++  + +       F  
Sbjct: 401 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATENGVSLWTVLCEPLTYGLNFNK 460

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              SK Q     I   +      + ++  T I+               E     + ++E 
Sbjct: 461 GTHSKLQIFRDLISGFLEGVVDKNAYEIGTEIIRQSGIINDVCQDNSPENLSRKENIEEL 520

Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N           E N   SL + +SE+             +  ++ +MTVH+AKGLE  
Sbjct: 521 VNGMSDFCAMRLEEGNPNISLTDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEFR 579

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 580 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 605

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   +          K    +    + D      R+ +    ++   
Sbjct: 606 ERRLFYVAITRAEEHCFLSYARTRFRYGKMEFGSPSRFLKDIDIRFLRLPQEAGLSNKID 665

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           DE  A+        +      E+      E     K      +       +  ST  +  
Sbjct: 666 DESGAFRRENSTGFSRSPHVRESFYNKEKETPQRPKQQMIAPSVPRNLKRVTSSTPASSS 725

Query: 767 KTN 769
              
Sbjct: 726 VPA 728


>gi|292558177|gb|ADE31178.1| ATP-dependent DNA helicase PcrA [Streptococcus suis GZ1]
          Length = 692

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/589 (15%), Positives = 182/589 (30%), Gaps = 118/589 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +DE QD
Sbjct: 99  QIVAKCYTAYQKELRQSEAVDFDDLIMLTLRLFDQNPE---VLTYYQQKFQYIHVDEYQD 155

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++   + 
Sbjct: 156 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYPES 205

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST ++L   ++V     N +                      
Sbjct: 206 --------KVVLLEENYRSTKNVLQAANEVIENNRNRRPKK------------------- 238

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW                ++    D   +       A  +A  I  +           
Sbjct: 239 --LW-------TQNAQGDLITYYRARDENDE-------AIFVAGQIDQLHREGKA----- 277

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I            I               I+D+++    
Sbjct: 278 -----YKDFTVLYRTNAQSRTIEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNI 328

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + K+       + ++ E  Q               
Sbjct: 329 IANPSDNISYERIVNEPKRGVGPGTVDKLRDFATSHSMSLLEASQDIMLSPVKGKAAQAV 388

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
             +   ++ L +     +       +L          ++   E     + + EFL+ T  
Sbjct: 389 FDLANLLYNLRNQLDNLTVTQVVEAVLNQTGYIDALAAQNTLEANARIENIQEFLSVTKN 448

Query: 539 NE----QNSYSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            +    +   + L +L    L+              +EV +MT+H AKGLE PVVFL+  
Sbjct: 449 FDEKDVEEEETGLDKLTRFLLDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLIGM 508

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF      +                                              YV
Sbjct: 509 EENVFPLSRAAEEEDELEEERRL----------------------------------AYV 534

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           G+TRA   L +    +     ++N       + +   +    + +    
Sbjct: 535 GITRAEQTLYLTNAYSRLLFGRTNYNQPSRFIREISSDLLDYQGLARPA 583


>gi|260199970|ref|ZP_05767461.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T46]
 gi|289442365|ref|ZP_06432109.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46]
 gi|289415284|gb|EFD12524.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46]
          Length = 769

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 113/739 (15%), Positives = 205/739 (27%), Gaps = 134/739 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +      +              +            + L         ++   
Sbjct: 79  AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + +          +    
Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L        N    P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +     +                      
Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +  +  +         I           +   I+D++A  R 
Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478
           + +  D +S   +L +P     +     +     +      + +   A            
Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 ++   EL          +    +L     R++  +    +    +D L+E ++ 
Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542

Query: 536 TLRN----------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGL 583
                          +        L   LE+            H    V +MT+HTAKGL
Sbjct: 543 AHEFSTDRDGPRWTSEAGRPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGL 602

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVF+      +F H                                           
Sbjct: 603 EFPVVFVTGWEDGMFPHMRALDNPT----------------------------------E 628

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             E  RL YVG+TRA  +L + +    S+  +         + +        ++     S
Sbjct: 629 LSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPS 688

Query: 704 INKDEWIAYEWSTHHPENT 722
            +     A  + +  P  T
Sbjct: 689 FSAPVSGAGRFGSARPSPT 707


>gi|118471354|ref|YP_889771.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2
           155]
 gi|118172641|gb|ABK73537.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2
           155]
          Length = 783

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 102/637 (16%), Positives = 179/637 (28%), Gaps = 126/637 (19%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             T+   +   Y+   +    LDF+DLI  T  +L+       I     +   HIL+DE 
Sbjct: 181 MATVIAQVYGEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHILVDEY 237

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+ ++R L        +    P  L  VGD  QSIY+F GA  + +   +R   
Sbjct: 238 QDTNHAQYVLVRELVGHHLEDHDG-VPPSELCVVGDADQSIYAFRGATIRNIEDFERDFP 296

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                     + I L  ++RST  IL   + V +     +                    
Sbjct: 297 --------DATTILLEQNYRSTQTILNAANAVIARNTGRREKR----------------- 331

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW             +        +   +       AR +A  I  +         
Sbjct: 332 ----LW-------TDAGQGELIVGYVADNEHDE-------ARFVADEIDALTDR------ 367

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    DI V  R    +  +  +         I           +   I+D++A  
Sbjct: 368 ---HGYNYNDIAVFYRTNNSSRALEEVF----IRAGIPYKVVGGVRFYERREIRDIVAYL 420

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF--- 481
           R + +  D +S   +L +P     +     +     +   +  E +Q  A   +      
Sbjct: 421 RVLDNPGDSVSMRRILNTPRRGIGDRAEACVAVYAENTGVSFNEALQAAAEGRVPMLNTR 480

Query: 482 -----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
                   ++ + +L          D    +L     R++  +    +    +D L+E +
Sbjct: 481 SEKCIASFVQMLDDLRGKLDEE-LGDLVEAVLERTGYRRELEASSDPQDLARLDNLNELV 539

Query: 534 NFTLRNE-----------------QNSYSSLQELISELEQYPPTIKRAH--SANHNEVRI 574
           +                                L   LE+                 V +
Sbjct: 540 SVAHEFSIDLANAQALAEESDEPVDEDIPDTGVLAQFLERVSLVADADDIPEEGSGVVTM 599

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+HTAKGLE P VF+      +F H                                  
Sbjct: 600 MTLHTAKGLEFPAVFVTGWEDGMFPHMRALGDP--------------------------- 632

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                  +   E  RL YVG+TRA  +L + +    S+  +         + +       
Sbjct: 633 -------NELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELID 685

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
            ++I+                                
Sbjct: 686 WRRIEAPTPAYAAPGRMSSSGGGGIGFGSPRPSPNRP 722


>gi|86132275|ref|ZP_01050870.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
 gi|85817194|gb|EAQ38377.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
          Length = 778

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 109/691 (15%), Positives = 214/691 (30%), Gaps = 129/691 (18%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTL--------AKYLNAHYEEAKKKNCVLDFEDL 152
           K+ Q+     ++   T + + +    +             + A Y +   K   +DF+DL
Sbjct: 142 KQVQNRISSFKNSLITVRAYANNPELVEADAMAKRPRMGEIYAEYVDRCFKAGAMDFDDL 201

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           ++ TN+LL +      +  K      +IL+DE QDT+  Q+ ++++L++ F         
Sbjct: 202 LLRTNELLNRFPE---VLNKYQNRFKYILVDEYQDTNHSQYLIVKALSDKF--------- 249

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
            + +  VGD+ QSIY+F GA    +L  ++  +          ++  L  ++RS+ +I+ 
Sbjct: 250 -QNICVVGDDSQSIYAFRGANINNILNFQKDYEN--------VAMYRLEQNYRSSKNIVE 300

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
             + V    +     +                     +W        ++   Q     S 
Sbjct: 301 AANSVIEKNKTRLDKT---------------------VW------TANEDGGQIIVHRSP 333

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
            D            R +A +I         F N     +   D  +L R    +  +   
Sbjct: 334 TDGEEG--------RYVASSI---------FENRMNHQLNNGDFAILYRTNAQSRAMEDA 376

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R       I               IKD++   R +++ +D+ +   ++  P        
Sbjct: 377 LR----KRDIPYRIYGGLSFYQRKEIKDVLGYLRVLVNPKDEEALKRVVNYPARGIGGTT 432

Query: 453 IFKICTQRHE-TETVYEYIQKFAN---------CGISKFQHVIKYIHELIHIAQFCSPHD 502
           + K+         +++E + K               +K ++ +  I     + +      
Sbjct: 433 LDKLTVAAKHYGRSMFEVMDKIEQLGPSMNINRGTQTKLKNFVTMIKSFQILNEESDAFT 492

Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--EQNSYSSLQE-LISELEQ 556
               +       Q+       E    I+ ++E LN       EQ   +     L   LE 
Sbjct: 493 VAETVARKTGLLQELKKDGTPEGIARIENIEELLNGMRDFVEEQKELADATGSLAEFLED 552

Query: 557 YPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                   +   + + V +MT+H AKGLE P V++V     +F                 
Sbjct: 553 VALATTLDNDTGDDDRVALMTIHLAKGLEFPFVYIVGMEEDLFPSGMS------------ 600

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                    +S  EE  RL YV +TRA  Q  +    +     K
Sbjct: 601 ----------------------MSTRSELEEERRLFYVALTRAEKQAYLTYTESRYRWGK 638

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                    + +         +  + +   K    A  +         L++  +      
Sbjct: 639 LVDAEPSRFIEEIDDKYLDY-QTPMESYRYKPLIDADIFGDVDKSKLRLKKPVSGTPPKV 697

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                 +L    K          PS   +  
Sbjct: 698 GTPTQDQLRKLRKIRPAAGDSATPSLAGSLE 728


>gi|194466913|ref|ZP_03072900.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23]
 gi|194453949|gb|EDX42846.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23]
          Length = 757

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 118/813 (14%), Positives = 239/813 (29%), Gaps = 153/813 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   N             + ++   L   S  +     
Sbjct: 31  GAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIWVST 90

Query: 66  FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-EFIKIRDRFNTYKMFKS 122
           F  L    L +           T     +   L +++    + +  K   R     +  +
Sbjct: 91  FHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAELNIDTKKFDPRSILSAISNA 150

Query: 123 TLASLT--------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
             A LT              +       Y++  + N  LDF+DLI+ T +LL+       
Sbjct: 151 KNALLTPDDYSKEANSMFENMVARAYKLYQQELEANQALDFDDLIMKTIELLESD---QE 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L + +          + L  VGD  QSIY 
Sbjct: 208 TLEFYQDKFHYIHVDEYQDTNDAQYRLVNLLAQKY----------QNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA    +L  +    +           + L  ++RST  IL   ++V +     +  +
Sbjct: 258 WRGANMNNILNFEHDYPQ--------AKTVMLEQNYRSTQTILNAANEVIANNLYRKKKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + S+    +   +       A+ 
Sbjct: 310 ---------------------LW-------TENGQGDKISYYRAQNEHDE-------AQF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I             +K      D  +L R    + ++            I      
Sbjct: 335 IVSKIKE---------EQEKHGYHFNDFAILYRTNAQSRMVEETF----LKSSIPYTMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY- 467
                D   I+D++A    I++  D +SF  ++ +P        +  +    +E      
Sbjct: 382 GHKFYDRREIRDILAYLTLIVNPADSMSFERVVNTPKRGIGLTSVEHLRNFANENGWTLL 441

Query: 468 ------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                 +   +      +K     + +  L   A++ +  D    IL      +      
Sbjct: 442 KAAQNVDTASEITARTRNKIDEFGQLMANLTKQAEYLTLTDLTEQILELSGYNKMLSDDR 501

Query: 522 GNE---VIDVLDEFLNFTLRNEQNS----YSSLQELISELEQYPPTIKRAH-SANHNEVR 573
             E     + LDEF + T   ++        +LQ++I+ L        +         V 
Sbjct: 502 SLEAQARRENLDEFKSVTQEYDEQHKDDDDPNLQKIINFLADLALVSDQDDVDEQAPAVT 561

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 562 LMTLHAAKGLEFPVVFLVGMEEGIFPLSRALMEDDELEEERRL----------------- 604

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                             YVG+TRA  +L +                +  ++Y     ++
Sbjct: 605 -----------------AYVGITRAKKKLYLT-------------NAFSRLLYGRIQRNQ 634

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             + ++  +S       +   ++      P +R               +     ++    
Sbjct: 635 PSRFVEEIDSELLQFENSPSGNSIKDSKLPFDRAAATAT-----TYRDQQKRTYRSAGKR 689

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
              +  +               +++ + +G ++
Sbjct: 690 VKPITNTGTGADKVGWKTGDKVEHKKWGQGTVV 722


>gi|153216919|ref|ZP_01950683.1| DNA helicase II [Vibrio cholerae 1587]
 gi|153830867|ref|ZP_01983534.1| DNA helicase II [Vibrio cholerae 623-39]
 gi|227080412|ref|YP_002808963.1| DNA helicase II [Vibrio cholerae M66-2]
 gi|229512494|ref|ZP_04401966.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21]
 gi|262191258|ref|ZP_06049454.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93]
 gi|298500833|ref|ZP_07010635.1| DNA helicase II [Vibrio cholerae MAK 757]
 gi|124114039|gb|EAY32859.1| DNA helicase II [Vibrio cholerae 1587]
 gi|148873656|gb|EDL71791.1| DNA helicase II [Vibrio cholerae 623-39]
 gi|227008300|gb|ACP04512.1| DNA helicase II [Vibrio cholerae M66-2]
 gi|229350493|gb|EEO15441.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21]
 gi|262032863|gb|EEY51405.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93]
 gi|297540337|gb|EFH76396.1| DNA helicase II [Vibrio cholerae MAK 757]
          Length = 723

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 117/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++   +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +  R             + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N         S     ++ I+ L         H      +      + +    G 
Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P+VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|241890126|ref|ZP_04777424.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379]
 gi|241863748|gb|EER68132.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379]
          Length = 727

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 184/549 (33%), Gaps = 112/549 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + AHY+   KKN VLDF+DL++ T  L KK      +      +  +I +DE QDT+
Sbjct: 168 VAEIYAHYQSYLKKNSVLDFDDLMLKTIVLFKKFPE---VLAIYQNQFQYIHVDEYQDTN 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           +IQ+ +I+ L+             + +  VGD+ QSIYS+ GA    ++  ++       
Sbjct: 225 VIQYRLIKMLSA----------VHKNVCVVGDDDQSIYSWRGACSDNIINFEKDFD---- 270

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RS + IL   + V     + +                       +
Sbjct: 271 ----DVELVFLDQNYRSNSTILDAANAVIKNNTDRKEK---------------------E 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       +++   +   + +  D    +         IA  I  +             
Sbjct: 306 LWS------ENKGGGKISVYAASNDKDETDD--------IAKKILELKKEG--------- 342

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KDI +L R    +  +          + I               ++DL+A    I+
Sbjct: 343 -IDYKDIAILYRANYLSRQMENS----CLSFGIPYKLIGSLKFLQRQEVRDLLAYLNVIV 397

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKF-ANCGISKFQHVIKY 487
           ++ D+ S   ++  P        + KI         +++E ++   A     K    IK 
Sbjct: 398 NRADEFSLRRIINVPKRGVGASSMDKIDKYAEQYGISLFEALKNIEAIGVSKKIVTNIKL 457

Query: 488 IHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
           +  LI      +  +  +    I                      + + E ++   +   
Sbjct: 458 LTNLIEKYSEVERYAIDELIIGIYKDSGYETMLKESNDPYAESRIENISELVSSAKQFSS 517

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            +      LI  + +   T         + V + TVH +KGLE  VVF++     +F   
Sbjct: 518 MN----DSLIDFISEMSLTSDSDDENQEDAVVLSTVHASKGLEYKVVFIMGLEENLFPS- 572

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                        I        +K+  EE  RL YV +TRA ++
Sbjct: 573 -----------------------------IRDAESSADEKNKMEEERRLAYVAITRAKER 603

Query: 662 LIICKHSNT 670
           L +   +  
Sbjct: 604 LFMSYANRR 612


>gi|311748551|ref|ZP_07722336.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1]
 gi|126577070|gb|EAZ81318.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1]
          Length = 752

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/550 (17%), Positives = 174/550 (31%), Gaps = 116/550 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+E   K   +DF+DL+ NTN L +       +  K  Q   +I++DE QDT++ 
Sbjct: 176 EIYQRYQERLFKAGAMDFDDLLFNTNILFRDH---LDVLNKYQQRFKYIMVDEFQDTNVS 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ + + L              + +  VGD+ QSIY+F GA+ + +L  ++         
Sbjct: 233 QYLITKKLAA----------VHQNICVVGDDAQSIYAFRGADIQNILNFEKDYPDLF--- 279

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +++L  ++RST  I+   + +    +        ++               ++L 
Sbjct: 280 -----VVKLEQNYRSTKTIVEAANSIIDKNKAQLKKIVWTSNP---------DGDQIELI 325

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           +      +                           R +A TI         F     + +
Sbjct: 326 KASSDNEEG--------------------------RIVANTI---------FEEKNNKQL 350

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    +  +    R       ++              IKDLMA  RF ++ 
Sbjct: 351 SNNDFAILYRTNSQSRSMEEALR----KMNLTYKIVGGLSFYQRKEIKDLMAYMRFTVNT 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE----YIQKFANCGISKFQHVIK 486
            D+ +F  ++  P     +  + K +         ++E              +       
Sbjct: 407 ADEEAFKRVINYPKRGVGDTSVEKMLVAAYEHDIPLWEVVTNAHSFLPGRASNSVSDFAT 466

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---E 540
            I       +    ++    I       ++       E     + + E LN        E
Sbjct: 467 MIKAFQIDVERKDAYEAANTIAKQSGLLRELYEDKTIEGLNRYENVQELLNAIKEYVDNE 526

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +N   SL   + E+     T           + +MT+H++KGLE   VF+V     +F  
Sbjct: 527 ENEDKSLGAFLQEIAL--LTDNDQDKDKTEAITLMTIHSSKGLEFKQVFVVGLEEDLFPS 584

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           + +                                     +   EE  RL YV  TRA D
Sbjct: 585 QMM----------------------------------MQSREDLEEERRLFYVATTRAMD 610

Query: 661 QLIICKHSNT 670
           +L        
Sbjct: 611 KLYFTYALTR 620


>gi|91203329|emb|CAJ72968.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 729

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 198/617 (32%), Gaps = 123/617 (19%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +   +   Y+   K    LDF+DL+I T +LLK   +   +     +   +ILIDE Q
Sbjct: 162 HQMVAKIYKKYDTMLKSGNALDFDDLLIKTVELLK---IRPDVLSSYQERFKYILIDEYQ 218

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q+ + R L + +          + +   GD  QSIY + GA+ + ++  ++    
Sbjct: 219 DTNFVQYAISRLLAQKY----------KNICVTGDPDQSIYGWRGADLRNIMDFEKDYP- 267

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     ++ L  ++RST +IL     V    +  +                     
Sbjct: 268 -------DARVVLLEQNYRSTKNILLAASSVIQKNKYRKQK------------------- 301

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             ++W           + ++       +   +       A  IA TI  + G        
Sbjct: 302 --EIW-------TENEHGEKIKTIHCENEHSE-------AEEIAKTIRALRGNG------ 339

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               I+  +I +  R    +  +    R    +  I  V            IKD++A  R
Sbjct: 340 ----IKYTEIALFYRTNAQSRTLEIALR----NAGIPYVIVGGVEFYRRKEIKDILAYIR 391

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-------VYEYIQKFANCGIS 479
             ++  DD +    + +P        + KI       E+       + + I +      +
Sbjct: 392 LCVNPCDDSALERAINTPARGIGTTTVKKIKEWAESRESTLFNAIGIVDAIHEVTGKSAA 451

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
             +   + I  L H+    S       I+               E  D    ++E +N  
Sbjct: 452 AIKRFYELIMVLRHM-PETSVEKTLKSIIDKTGYIHFLRKSEEKESEDRIANVEELVNAA 510

Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
              + N    SLQ  + E+            A    V +MT+HTAKGLE PVVF+     
Sbjct: 511 HEYDANHTDGSLQGFLEEVALISDLDTVEDLAE--AVTLMTLHTAKGLEFPVVFISGMEE 568

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +  H   +                                             L YVG+
Sbjct: 569 GLLPHSESRISEEEIEEERR----------------------------------LCYVGI 594

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA  +L +        +++         V   F ++     +   +         Y+  
Sbjct: 595 TRAMKRLFLTY-----TKRRMRYGQLIPCVASRFLDEIHADCMDRLDKTENHFSYEYQGK 649

Query: 716 THHPENTPLEREETIKQ 732
           ++  EN  +E  + + +
Sbjct: 650 SNSWENDAVEACDVLSE 666


>gi|323351871|ref|ZP_08087522.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66]
 gi|322121928|gb|EFX93660.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66]
          Length = 762

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/729 (14%), Positives = 223/729 (30%), Gaps = 139/729 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53
           G    ++  LI++  + +    V+  N             + ++A+ L            
Sbjct: 28  GAGSGKTRVLIHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKTEAQDCLIATF 87

Query: 54  -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEF 107
                +   +           +     ++ T  K I+    ++ K  + +  L    +  
Sbjct: 88  HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKNLNLDPKKWNERAILGTISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D      +         +       Y++  +++  +DF+DLI+ T  L  +     
Sbjct: 148 NDLIDEVAYANLAGDMYT--EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD-- 203

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 204 -VLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++           +  ++ L  ++RST  IL   ++V     N +  
Sbjct: 253 GWRGADMQNILDFEKDYP--------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW           + ++  +    D   +       A 
Sbjct: 305 N---------------------LW-------TQNEDGEEIVYYRANDEQDE-------AL 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TI  +                 KD  VL R    +  +            I     
Sbjct: 330 FVARTIDQLSREG----------YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMV 375

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     I+D+++    I +  D++S+  ++  P        + KI      +  ++
Sbjct: 376 GGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISL 435

Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                        + +L       +  +    +L          ++ 
Sbjct: 436 LDASANILLSPVKGKAAQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYSAALAAQA 495

Query: 522 GNE---VIDVLDEFLNFTLRNEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEV 572
             E    I+ ++EFL+ T   +++       S L +L   L +              +EV
Sbjct: 496 TLESQARIENIEEFLSVTKNFDESPDNPADESGLDKLSRFLNDLALIADTDDGDTESSEV 555

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFLV     VF      +                           
Sbjct: 556 TLMTLHAAKGLEFPVVFLVGMEENVFPLSRASEDEDELEEERRL---------------- 599

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                              YVG+TRA   L +   ++     K+N       + +   + 
Sbjct: 600 ------------------AYVGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDL 641

Query: 693 ERVKKIKLT 701
              + +   
Sbjct: 642 LDYQGLARP 650


>gi|312875404|ref|ZP_07735408.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b]
 gi|311089067|gb|EFQ47507.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b]
          Length = 742

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 115/671 (17%), Positives = 219/671 (32%), Gaps = 131/671 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E + + L          ++ + +L         ++  +   +            
Sbjct: 66  AASEMRERVKQLLDSDADSIW--MSTFHALC--------VRILRRYAEKIGYANNFSIAD 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 L ++   + NI +++ +     L   +  ++++ +   + +      +      
Sbjct: 116 TAEQLTLIKRILKELNIDSKKFDP--KSLVNAISNAKNDLLD-PEEYAKQVSNEYEKKI- 171

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y++  K +C++DF+DLI+ T  L K       + +    +  +IL+DE QD
Sbjct: 172 ---AIVYREYQKNLKHDCIMDFDDLIMQTLVLFKSEPE---VLHYYQNKFWYILVDEYQD 225

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+   L +            + +  VGD  QSIY + GA  + +L  ++  +  
Sbjct: 226 TNQAQYELCHLLAQQ----------HKNICVVGDADQSIYGWRGANMQNILNFEQDYRND 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I+L  ++RST  IL   + V    +N +                      
Sbjct: 276 ------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +     + ++        +       A  I   I+  I          
Sbjct: 311 --LW-------TNSGEGSKVNYYRASTGNDE-------AIFIIGKINKEIKE-------- 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  I            I           D   IKD+MA  R 
Sbjct: 347 -NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVGGHKFYDRKEIKDIMAYLRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKF---- 481
           + +  D +S   ++ +P        I  F+     +    +             K     
Sbjct: 402 VANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTALEALQSLELAPISGKLFNIM 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +   + + E+I  A+  +  +    IL          +    E     + LDEFL  T +
Sbjct: 462 KDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALRAEHTIEADTRLENLDEFLTVTKQ 521

Query: 539 NE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +   + +    + +   L +    + +     N ++V +MT+H AKGLE PVVFLV   
Sbjct: 522 FDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALMTLHAAKGLEFPVVFLVGME 581

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                           S  EE  RL YVG
Sbjct: 582 EGIFP----------------------------------LARAQSDNSELEEERRLAYVG 607

Query: 655 MTRASDQLIIC 665
           +TRA  QL + 
Sbjct: 608 ITRAKKQLYLT 618


>gi|315222686|ref|ZP_07864575.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211]
 gi|315188372|gb|EFU22098.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211]
          Length = 777

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 95/559 (16%), Positives = 181/559 (32%), Gaps = 101/559 (18%)

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              E+ +L+     T    P+K              +  L    +    + D      + 
Sbjct: 129 DPGEQRTLMKRILKTLNLDPKKWNE-----------RAILGTISNAKNDLIDEVAYAALA 177

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                   +       Y++  +++  +DF+DLI+ T  L  K      +     Q   +I
Sbjct: 178 GDMYT--EIVAKCYEMYQKELRQSEAMDFDDLIMLTLRLFDKNPD---MLTYYQQRYQYI 232

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            +DE QDT+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  
Sbjct: 233 HVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDF 282

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           ++           +  ++ L  ++RST  IL   + V     N +  +            
Sbjct: 283 EKDYP--------EAKVVLLEENYRSTKTILQAANDVIKNNRNRRPKN------------ 322

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW           + +   +    D   +       A  +A TI  +    
Sbjct: 323 ---------LW-------TQNADGENIVYYRANDEQDE-------ALFVAKTIDEL---- 355

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                        +D  +L R    +  I            I               I+D
Sbjct: 356 -----SSTSDYVYRDFAILYRTNAQSRNIEEAL----LKANIPYTMVGGTKFYSRKEIRD 406

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-- 477
           +++    I +  D++SF  ++  P        + KI      +  ++ +   +       
Sbjct: 407 VISYLNLIANTSDNISFERVVNEPKRGVGPGTVEKIRNFAAGQEMSLLDASSQIMLSPVK 466

Query: 478 ---ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
                        I  L       +  +   L+L      +Q  ++   E    I+ ++E
Sbjct: 467 GKAAQAVFDFANLILNLREQLDELTVTEVVELVLEKTGYTEQLAAQATLESQARIENIEE 526

Query: 532 FLNFTLRN--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           FL+ T           E+     L   +++L     T      ++   V +MT+H AKGL
Sbjct: 527 FLSVTKNFDENPENDTEETGLDRLSRFLNDLALIADTDDGDQESSE--VTLMTLHAAKGL 584

Query: 584 ESPVVFLVDTGSQVFSHKH 602
           E PVVF++     VF    
Sbjct: 585 EFPVVFIIGMEENVFPLSR 603


>gi|145222451|ref|YP_001133129.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK]
 gi|315442898|ref|YP_004075777.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1]
 gi|145214937|gb|ABP44341.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK]
 gi|315261201|gb|ADT97942.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1]
          Length = 780

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 106/633 (16%), Positives = 184/633 (29%), Gaps = 125/633 (19%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   +   Y+   +    LDF+DLI  T  +L+       I     +   HIL+DE 
Sbjct: 183 LARIVADVYGEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHILVDEY 239

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+ ++R LT       +   +P  L  VGD  QSIY+F GA  + +   +R   
Sbjct: 240 QDTNHAQYVLVRELTGSGATESDESVAPAELCVVGDADQSIYAFRGATIRNIEDFERDFP 299

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                     + I L  ++RST  IL   + V +     +                    
Sbjct: 300 --------SATTILLEQNYRSTQTILNAANSVIARNAGRREKR----------------- 334

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW             +        +   +       AR IA  I  +  +      
Sbjct: 335 ----LW-------TDAGEGELIVGYVADNEHDE-------ARFIAQEIDALSDS------ 370

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D+ V  R    +  I  +         I           +   I+D++A  
Sbjct: 371 --IPDFSYNDVAVFYRTNNSSRAIEEVF----IRAGIPYKVVGGVRFYERREIRDIVAYL 424

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY---------IQKFANC 476
           R + +  D +S   +L +P     +     +      T   +           +      
Sbjct: 425 RVLDNPGDAVSMRRILNTPRRGIGDRAEACVAVHAENTGLNFNDALVAAAEGNVPMLNTR 484

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
                   +  + +L          D    +L     R +  +    +    +D L+E +
Sbjct: 485 SEKAIAGFVALLDDLRGGLDGE-LGDLVEAVLDRTGYRAELEASSDPQDLARLDNLNELV 543

Query: 534 NFTLRN-----------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRI 574
           +                      +         L + LE+            H    V +
Sbjct: 544 SVAHEFSTDLANARALAEGDEDAQDEDVPDTGVLAAFLERVSLVADADDIPEHGSGVVTM 603

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+HTAKGLE P+VF+      +F H       +                          
Sbjct: 604 MTLHTAKGLEFPLVFVTGWEDGMFPHMRALGDPL-------------------------- 637

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                      E  RL YVG+TRA  +L + +    S+  +         + +       
Sbjct: 638 --------ELSEERRLAYVGITRARQRLYLSRAKVRSSWGQPMLNPESRFLREIPQELID 689

Query: 695 VKKIKLTNSINKDEWI-AYEWSTHHPENTPLER 726
            ++ +   S        A  + T  P  T    
Sbjct: 690 WRRTEAPASSFSAPVGNAGRYGTPRPSPTRPAA 722


>gi|311064185|ref|YP_003970910.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum PRL2010]
 gi|310866504|gb|ADP35873.1| PcrA ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 885

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 115/735 (15%), Positives = 219/735 (29%), Gaps = 124/735 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +                +       ER 
Sbjct: 75  AAAEMRERLEGLIGPVAQRMWVSTFHSACVRILRRDG---QSIGLASGFSIYDTADCERL 131

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-- 124
             L    L       K    + I  +  D K  L   Q++  +    +   +        
Sbjct: 132 VKLVGADLNIDL---KRYTPRAILSRISDYKNSLIGWQEQLKRYAPDYRPGQRGYQIGNF 188

Query: 125 -ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   + A Y+        +DF+DLI  T +LL+ +     +      +  +IL+D
Sbjct: 189 GDIEVLYSVIYAEYQHRLAMANAVDFDDLIGRTVELLRTQP---QVADYYRHKFRYILVD 245

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGK-------NTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+E+IR L      G+          + P  +  VGD  QSIY+F GA+ + 
Sbjct: 246 EYQDTNHAQYELIRELAGVDAAGQVVPDAPSAGRAGPAWITVVGDSDQSIYAFRGADIRN 305

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++               I L  ++RST  IL   + V +  +  +           
Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIANNQGRKPKK-------- 349

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  + S              +  +       A   A  IA  I+ +
Sbjct: 350 -------------LWTALGS-------GDPIVGYAADN-------AEQEAAWIAGEIARV 382

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +              D+ ++ R    +  +            +           +  
Sbjct: 383 RAEEGT---------PYSDMAIMYRANAQSRALEGAL----VHAGLPYQLVGGTRFYERR 429

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            +KD +A  + I++  D+++   +L  P           I +      T +    +  + 
Sbjct: 430 EVKDAIAYLQAIVNPADNVNMRRILNVPKRGLGPRAESIIVSYADAHATTFWDGIEHLDQ 489

Query: 477 GI-------SKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524
                     +       +  L   A      P +    +L      ++       +   
Sbjct: 490 IDGVPTRTGKQLAAFRDLMRSLSAFAAEHDGKPSEVVGEVLSQSGLLEELQRSEDPQDAS 549

Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582
            ++ L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKG
Sbjct: 550 RVENLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPSEGEDSGKVTLMTLHTAKG 609

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFL       F H                                          
Sbjct: 610 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDAD 635

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E  RL YVG+TRA  +L + + +  +   ++N+      + +        K+ +   
Sbjct: 636 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPDRLIDWKRRETGM 695

Query: 703 SINKDEWIAYEWSTH 717
              +  W    +   
Sbjct: 696 EGMRSGWSRRGFDDE 710


>gi|255692465|ref|ZP_05416140.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM 17565]
 gi|260621733|gb|EEX44604.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM 17565]
          Length = 789

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 98/673 (14%), Positives = 205/673 (30%), Gaps = 123/673 (18%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
             + +   Y E  ++   +DF+DL++ T  L +       I  +   +  +IL+DE QDT
Sbjct: 175 AIRDIYTRYWERCRQAGAMDFDDLLVYTYILFRDYPE---ILARYQDQFRYILVDEYQDT 231

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q  ++  L ++           + +  VGD+ QSIYSF GA+   +L   +      
Sbjct: 232 NYAQHSIVLQLAKE----------NQHVCVVGDDAQSIYSFRGADIDNILYFTKTYPN-- 279

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   + +L  ++RST  I+   + +    E     +  S                 
Sbjct: 280 ------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS----------------- 316

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                     + +       + +Y D    +         +A  ++ +            
Sbjct: 317 ----------EKEKGEAIGVFQAYSDVEEGDI--------VANKVAELRREYH------- 351

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 D  +L R    + +     R       +               IKD++A  R +
Sbjct: 352 --YGYADFAILYRTNAQSRIFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIAYFRLV 405

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FANCGISK 480
           ++  D+ +F  ++  P     +  + KI +       +++  + +             +K
Sbjct: 406 VNPNDEEAFKRIINYPARGIGDTTVGKIISAATDHGVSLWSTLCEPLTYGLNINKGTHAK 465

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN--- 534
            Q     I   I      + ++    I+               E     + ++E +N   
Sbjct: 466 LQGFRALIEGFITGQADKNAYEIGVDIIRQSGIMNDVCQDTSPENLSRKENIEELVNGMN 525

Query: 535 ---FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                 + E N   SL + +SE+           + +  ++ +MTVH+AKGLE   VF+V
Sbjct: 526 DFCALRQEEGNPNISLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFKNVFVV 584

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +F    +                                         EE  RL 
Sbjct: 585 GLEENLFPSGMVGDSP----------------------------------RALEEERRLF 610

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YV +TRA +   +          K    +    + D   +  ++      +    +    
Sbjct: 611 YVAITRAEEHCYLSFAKTRFRYGKMELGSPSRFLRDIDIHYLKMPHEAGISRSVDEGAGR 670

Query: 712 YEWSTHHP--ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
           +          +    R         E+K   K      +       ++  +  ++  ++
Sbjct: 671 FRREIEGGFTHSASPSRTTPFGSASSERKERPKAQIIAPSVPRNLKKVSTVSGGSQAMSS 730

Query: 770 LESLLSDNQTFNR 782
               ++  Q   R
Sbjct: 731 GPVSVAGLQAGQR 743


>gi|189423552|ref|YP_001950729.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189419811|gb|ACD94209.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 736

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 99/649 (15%), Positives = 196/649 (30%), Gaps = 117/649 (18%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                 ++R    +   +          + A Y+E  K+   LDF D+I+ T  L ++  
Sbjct: 140 ARIDDCKNRGLLPEELPAGDLWNQQFIRIYAAYQERLKRCNALDFGDMILQTVRLFEQFP 199

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +  +       +L+DE QDT+ +Q+ +IR L  +           + L  VGD+ Q
Sbjct: 200 E---VLSRWQHRFQWLLVDEYQDTNPVQYRLIRLLAGE----------RQNLCVVGDDDQ 246

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIYS+ GA+ + +L  ++   +         ++I L  ++RST  IL     V +     
Sbjct: 247 SIYSWRGADIRNILEFEKDFPQ--------VTVIRLEQNYRSTPTILQAAGAVVARNFGR 298

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  +  +           G+    +                               S   
Sbjct: 299 KAKTLWTDNP-------DGEPIRCERL----------------------------ESDRA 323

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR ++  I+ +              +   ++    R    + L+            I  
Sbjct: 324 EARFVSSEIALLQRNG----------LLLSEMAAFYRTNAQSRLLEEALAAE----GIPY 369

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHET 463
                      L IKD +A  R + +  DD+S   ++  P        + ++    R   
Sbjct: 370 HIVGGVRFYARLEIKDTLAYLRLLENPSDDVSLKRVINVPPRGIGAATVERVAELARQGQ 429

Query: 464 ETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
            T++E  ++        +   SK    ++ +     +A      +    +L       + 
Sbjct: 430 ITLFEAFERAVDSNLLGSGPRSKVAAFVELLQRFRRLAATQLMPELVRAVLEESGYLARL 489

Query: 518 ISRFGN---EVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVR 573
                    E ++ L + ++        +  + L + + ++            A    V 
Sbjct: 490 KESRDEEDSERLENLAQLVSAVEEFSTANPEAGLADFLEQVALVSDLE--RGEAGRPSVT 547

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE   VF+V    ++F H                                 
Sbjct: 548 LMTLHAAKGLEYKAVFMVGMEERLFPHVRSLDDPDG------------------------ 583

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                      EE  RL YVGMTRA ++L +          +         + +      
Sbjct: 584 ----------MEEERRLCYVGMTRARERLYLLYARRRMIFGQEQANLPSRFLKEIPAELM 633

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
               +     +         +S     N         +  +  +     
Sbjct: 634 ERNHVSCNPELPSSAQPKSSFSPAPSHNLAAVASAMAEVEVVPEPGDDY 682


>gi|188996189|ref|YP_001930440.1| UvrD/REP helicase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931256|gb|ACD65886.1| UvrD/REP helicase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 706

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 103/545 (18%), Positives = 183/545 (33%), Gaps = 112/545 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  K +   DF+DL+I T  +L        +  +   + ++IL+DE QDT+ IQ
Sbjct: 170 VFEKYEEELKNSNAFDFDDLLIKTVKILSNHPE---VLERWRNKFDYILVDEYQDTNRIQ 226

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            ++++ L  D            T+  VGD  Q IY++ GA P+ +L  ++          
Sbjct: 227 HKLLKLLVGD----------KHTITVVGDPAQCIYTWRGAHPENILDFEKDFP------- 269

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               I++L  ++RST  IL   + V S  +                         + LW 
Sbjct: 270 -GTKIVKLERNYRSTKKILDCANAVISKSKGKWKGK------------------VLTLW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   +   +        +   +       AR IA  I  +                
Sbjct: 310 ------TDKEEGEDIFLVPLENEKEE-------ARFIANKIKQLAQDG-----------S 345

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VLVR    T  I            I           +   +KD++A  +  ++ +
Sbjct: 346 YGDFAVLVRMTFLTRNIEEAF----ISNGIPYQVIGGLKFFERAEVKDILAYLKLAVNPK 401

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQHVIKYIHE 490
           D  SF   L  P     +  +  I +       + + +  ++F      K Q  ++ +  
Sbjct: 402 DYASFERSLTVPPRGVGDKGLEYIKSNFKTDWIQALKDSYERFNKSVKIKLQEYLELMEY 461

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQNSYSSL 547
           ++  A+F SP      I+     ++     +     + ++ ++E +      E+      
Sbjct: 462 VLENAKF-SPSKTAKEIVERIGYQEYLQKEYEKDWEDRVENINELIIALEEAEKEG---- 516

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           + L    E+      +    N N+ +IMTVH AKGLE   VF+      +F         
Sbjct: 517 KTLDQFFEESALMQAQDTIDNQNKAKIMTVHGAKGLEFDTVFVAGLEEGIFPSGRAFDDP 576

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                                EE  RL YV +TRA ++L +   
Sbjct: 577 T----------------------------------QLEEERRLFYVAITRAKNKLYLTYA 602

Query: 668 SNTSN 672
               +
Sbjct: 603 KERKS 607


>gi|315224086|ref|ZP_07865926.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287]
 gi|314945819|gb|EFS97828.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287]
          Length = 789

 Score =  291 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 113/687 (16%), Positives = 223/687 (32%), Gaps = 120/687 (17%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150
           K   ++ ++   ++  I +R  FN  ++ ++   +       +   Y +   K   +DF+
Sbjct: 139 KYKRIQSRISSFKNSLITVRAYFNNPELMEADAMARQPRLGEIYQEYVDRCFKAGAMDFD 198

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN+LL    +   +  K      +IL+DE QDT+  Q+ ++++L + F       
Sbjct: 199 DLLLKTNELLN---LYPDVFAKYQNRFRYILVDEYQDTNHSQYLIVKALADRF------- 248

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  VGD+ QSIY+F GA    +L  K    +            +L  ++RST +I
Sbjct: 249 ---HNICVVGDDAQSIYAFRGANINNILNFKNDYPE--------AKEYKLEQNYRSTKNI 297

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + V    +                                    +++     +   
Sbjct: 298 VEAANSVIEHNKIRLEKVVF---------------------------TENELGEPIKVHR 330

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           S  D+           R +A +I         F N  +  +   +  VL R    +  I 
Sbjct: 331 SPTDADEG--------RFVASSI---------FENKMQHQLPNGNFAVLYRTNSQSRAIE 373

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD++A  R I++  D+ + V ++  P     E
Sbjct: 374 DALR----KRDIPYRIYGGLSFYQRKEIKDMLAYLRLIINPNDEEALVRIINFPARGIGE 429

Query: 451 DDIFKICTQRHE-TETVYEYIQKFAN--------CGISKFQHVIKYIHELIHIAQFCSPH 501
             + K+    +   ++++E +                 K    +  I     + Q  +  
Sbjct: 430 TTMEKLTLAANHYKKSIFEIMYNINKLPELHINTTTKQKLTDFVVMILNFQALNQKANAF 489

Query: 502 DFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN---EQNSYSSLQELISELE 555
           +    +       Q+F      E    ++ ++E LN        +++   S   L   LE
Sbjct: 490 EVAEQVAKKTGLLQEFKKDGTPEGIAKMENIEEMLNGMKDFVEGQEDVADSRASLSEYLE 549

Query: 556 QYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        + + V +MT+H AKGLE P V++V     +F                
Sbjct: 550 DVALATDMDKEIGDDDRVALMTIHLAKGLEFPYVYVVGMEEDLFPS-------------- 595

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                +    ++  EE  RL YV +TRA  Q  +    N     
Sbjct: 596 --------------------AMSIQSRNDLEEERRLFYVALTRAEKQAYLTYAENRYRWG 635

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           K +       + +      +     ++N   + + +         + + L  ++ I  + 
Sbjct: 636 KLSDAEPSRFIEEIDERYLQYLTPSISNPNYRYKPLIDRDIFGEVDKSKLRLQKPISGIP 695

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPST 761
             +  P          +     L  S 
Sbjct: 696 PHKNAPTGEEQQKLRKLKPVNALYNSN 722


>gi|256820896|ref|YP_003142175.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
 gi|256582479|gb|ACU93614.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
          Length = 789

 Score =  291 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 113/687 (16%), Positives = 223/687 (32%), Gaps = 120/687 (17%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150
           K   ++ ++   ++  I +R  FN  ++ ++   +       +   Y +   K   +DF+
Sbjct: 139 KYKRIQSRISSFKNSLITVRAYFNNPELMEADAMARQPRLGEIYQEYVDRCFKAGAMDFD 198

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN+LL    +   +  K      +IL+DE QDT+  Q+ ++++L + F       
Sbjct: 199 DLLLKTNELLN---LYPDVLAKYQNRFRYILVDEYQDTNHSQYLIVKALADRF------- 248

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  VGD+ QSIY+F GA    +L  K    +            +L  ++RST +I
Sbjct: 249 ---HNICVVGDDAQSIYAFRGANINNILNFKNDYPE--------AKEYKLEQNYRSTKNI 297

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + V    +                                    +++     +   
Sbjct: 298 VEAANSVIEHNKIRLEKVVF---------------------------TENELGEPIKVHR 330

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           S  D+           R +A +I         F N  +  +   +  VL R    +  I 
Sbjct: 331 SPTDADEG--------RFVASSI---------FENKMQHQLPNGNFAVLYRTNSQSRAIE 373

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD++A  R I++  D+ + V ++  P     E
Sbjct: 374 DALR----KRDIPYRIYGGLSFYQRKEIKDMLAYLRLIINPNDEEALVRIINFPARGIGE 429

Query: 451 DDIFKICTQRHE-TETVYEYIQKFAN--------CGISKFQHVIKYIHELIHIAQFCSPH 501
             + K+    +   ++++E +                 K    +  I     + Q  +  
Sbjct: 430 TTMEKLTLAANHYKKSIFEIMYNINKLPELHINTTTKQKLTDFVVMILNFQALNQKANAF 489

Query: 502 DFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN---EQNSYSSLQELISELE 555
           +    +       Q+F      E    ++ ++E LN        +++   S   L   LE
Sbjct: 490 EVAEQVAKKTGLLQEFKKDGTPEGIAKMENIEEMLNGMKDFVEGQEDVADSRASLSEYLE 549

Query: 556 QYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        + + V +MT+H AKGLE P V++V     +F                
Sbjct: 550 DVALATDMDKEIGDDDRVALMTIHLAKGLEFPYVYVVGMEEDLFPS-------------- 595

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                +    ++  EE  RL YV +TRA  Q  +    N     
Sbjct: 596 --------------------AMSIQSRNDLEEERRLFYVALTRAEKQAYLTYAENRYRWG 635

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           K +       + +      +     ++N   + + +         + + L  ++ I  + 
Sbjct: 636 KLSDAEPSRFIEEIDERYLQYLTPSISNPNYRYKPLVDRDIFGEVDKSKLRLQKPISGIP 695

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPST 761
             +  P          +     L  S 
Sbjct: 696 PHKNAPIGEEQQKLRKLKPVNALYNSN 722


>gi|319942765|ref|ZP_08017069.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis
           3_1_45B]
 gi|319803645|gb|EFW00595.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis
           3_1_45B]
          Length = 816

 Score =  291 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 117/748 (15%), Positives = 228/748 (30%), Gaps = 122/748 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L +   +                +L + + +      +     
Sbjct: 29  GAGSGKTRVLTTRIAWLLEHNLATTGEILAVTFTNKAAKEMLTRLEGMIPYDLRRMWVGT 88

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L +  L    Q+    K     +   +   +K  +K +  +  K   +         
Sbjct: 89  FHGLCNRILRIHAQEAGLPKTFQILDSGDQLSLVKRLMKAANIDVEKTDPKQVVNFINWC 148

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                 +  +     + L L   L   YE   +K  V+DF +L++   +LL + D+   +
Sbjct: 149 KENGLRSSGVSAKDASDLRLG--LYQAYERECQKQGVVDFAELLLRCYELLTRNDL---V 203

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R    +   HIL+DE QDT+++Q+  ++ L  +      T  +   +FAVGD+ QSIY+F
Sbjct: 204 RAHYQKRFRHILVDEFQDTNVLQYRWLKILAGEKLGPNGTSLNA--VFAVGDDDQSIYAF 261

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA    +    +               I+L  ++RST  +L   + + +  +   G   
Sbjct: 262 RGANIGNMADFLKDFHVE--------KPIKLEQNYRSTKTVLDAANALIANNDGRLGK-- 311

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                        G  G   L                         + +  S    A  +
Sbjct: 312 --------NLWTSGSQGAKIL-------------------------VKELESEMDEAAWV 338

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
             +I           +   R        +L R    +  +            +       
Sbjct: 339 VDSIRR--AQRLTGGDASWR-----QFAILYRTNAQSRALEAELTA----RGVPYRIYGG 387

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   +K+L+   R I +  DD SF+ ++  P        I  +    R   ++++ 
Sbjct: 388 LRFFERAEVKNLLGYLRMITNPWDDTSFLRVVNFPTRGIGAKTIETLQESARASGQSLWA 447

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVID 527
            + +  +    +       I  L   AQ  +  D    ++ A      +     G + ++
Sbjct: 448 TLIQMGDQLSGRLAAFRDLIFTLRETAQNMTLPDAVAHVIKASGLEACYEKDKDGPDRLE 507

Query: 528 VLDEFLNFTLRNEQNS--YSSLQEL-----------ISELEQYPPTIKRAHS-ANHNEVR 573
            + E +       +N      L                 L Q            N N V+
Sbjct: 508 NMKEVITAAEGWFKNERLPEDLLAFSPANDEVPTPMEGFLTQATLEAGDKSEGQNVNAVQ 567

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MTVH+AKGLE P VF+V     +F H    K                            
Sbjct: 568 LMTVHSAKGLEFPWVFIVGAEEGIFPHFSAVKTVSEGGQGGLEEE--------------- 612

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                          RL+YV +TRA ++L+                     V +      
Sbjct: 613 --------------RRLMYVAITRAKERLVFTHCKVRRTYGTIFNNPLSSFVKEIPAELV 658

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +++ +   +  +  +     +     ++
Sbjct: 659 QMEPLFDDDEDDDSDRQGGHFYGRDRDD 686


>gi|307354471|ref|YP_003895522.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571]
 gi|307157704|gb|ADN37084.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571]
          Length = 1004

 Score =  291 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 144/916 (15%), Positives = 278/916 (30%), Gaps = 178/916 (19%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK--YLNAHYEEAKKKNCVLDFEDLI 153
            +++L  ++D    + ++          +    L+    +   YE  K++  +LDF+D+I
Sbjct: 151 FRDELISAEDIEEYLEEKNAQETSADEDIYLGKLSDLLKVYREYENYKRREELLDFDDMI 210

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             T  L + +     IR + +    +IL+DE QDT+  Q E+I+ LT             
Sbjct: 211 HETVRLFRNKPD---IRRQYENRFRYILVDEFQDTNYAQLELIKLLTSG----------- 256

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             L  VGD+ QSIY F GA    V               +    + L  ++R+T  IL V
Sbjct: 257 -HLCIVGDDDQSIYRFRGACEGNVDEFAGHF--------KDHKKVVLEENYRNTGKILRV 307

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             ++    + +   +  S                             +  P         
Sbjct: 308 ARQLIECADGSCTKNLRSNR--------------------------GEGEPVI------- 334

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
             + + S+ +  A  +A  I +++G   +            +I +L RKR +      + 
Sbjct: 335 --VAECSNENTEAGYVADEIESLMGEGFL----------PGEIAILCRKRSECGKFHKIL 382

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF--NFSED 451
               +   I               IKD ++  + + +  +       L   +     SE 
Sbjct: 383 ----DSRNIPCEFTGDAEFFAIPVIKDAVSYLKAVANPAESAIP---LNRMMRQAGVSET 435

Query: 452 DIFKICTQRHE-------TETVYEYIQKFANCGISK---FQHVIKYIHELIHIAQFCSPH 501
            I +I T   +        + V E +++            + V + +  L       +  
Sbjct: 436 AILEINTGAKQIRREGGKGDGVLEAMKRCGTEEDPDTIVIREVAENVDALSAARHKKTLP 495

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPP- 559
                I+         +     E +  L+      L   + + S  + +L+  L      
Sbjct: 496 ALVREIVLRTGK----LYSKDREGVAALNRLYEIALEFSRINPSGEIGDLLDHLSLLRDL 551

Query: 560 -TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                 +    + VRIMTVH +KG E   VF+ D   + F   +  K   +P        
Sbjct: 552 SGDFGVNEKTGSGVRIMTVHQSKGKEFSAVFVTDLAERRFPLNYRSKPFRVPVDLSKSIR 611

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSN 677
           P                    K+  ++E  RLLYV MTRA ++L +        N+  S 
Sbjct: 612 PG----------------DDEKELYKQEERRLLYVAMTRAKEKLYLTRAIRYGENKNDSK 655

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----LEREETIKQL 733
              +   +    + D  +       +   +   A       P +       E    I   
Sbjct: 656 PSVFLTEIDYLNNTDISIVSTDGGKNGKDNLISATGGPAEDPFSEENKLMKEAVAAIADK 715

Query: 734 MDEQKIPKKLFSPIKNDINEPY--------------------------------ILNPST 761
                + K L       ++E                                   L+ S 
Sbjct: 716 RYRSAVGKILALEYVRSLDEGKEFDNREFLNIPFEKPAVPRRKPEPLIKPGDGTRLSASA 775

Query: 762 IDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
           +       L                 F+ G   H +++ +  +        +        
Sbjct: 776 LKLYDDCPLRFKFEKILRIPTEPRTYFSLGTTAHLIIEHLTKMKMGGETPSMEKAEDLLE 835

Query: 814 KLWPA----------KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
           + W            ++   L+  +   LE  M    +       V    +         
Sbjct: 836 RFWSPDAYSSQKHEREDRTRLIAHLNNYLEWEMNNPNI------PVETEMEFEIRVLGTP 889

Query: 864 ISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            +G ID++  ++     + +YKT      + +        QL++Y   +K+   +     
Sbjct: 890 FTGYIDRLERTESGGYAVVDYKTSKTPMSKNDA---KEDIQLNLYALCVKEKTGSLPEKV 946

Query: 923 LLIYVSEPKVFI-IPQ 937
            L Y+ + K+   IP 
Sbjct: 947 SLFYLDKGKMVDYIPD 962


>gi|118575660|ref|YP_875403.1| superfamily I helicase [Cenarchaeum symbiosum A]
 gi|118194181|gb|ABK77099.1| superfamily I helicase [Cenarchaeum symbiosum A]
          Length = 977

 Score =  291 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 133/870 (15%), Positives = 253/870 (29%), Gaps = 154/870 (17%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+   ++  ++DF+D++     L +       +R +     +HIL+DE+QD +  Q
Sbjct: 173 VYQRYQGHLREMGIIDFDDMVSEAVRLFR---ARDDVRSEYGGRYSHILVDELQDANYAQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            E++R +                + AVGDE QSIY F GA                 +  
Sbjct: 230 LELVRLIAG-------------NITAVGDENQSIYGFQGAYTSGFENF--------DDIT 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++R T  I  +  +  +   +                    Q G V    
Sbjct: 269 GGAETISLNNNYRCTKTIAGLAAQCIANTPSGS------------------QAGAVH--- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                D   +       A  IA  I  +       +        
Sbjct: 308 ---------PEGSPVEIVECADEDSE-------AACIADRIVQIRSPGGESAGYS----- 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL RK  D    +           +    +    +      ++L+       +  
Sbjct: 347 ---IAVLTRKIADGKKFSDELE----LRGVPARYSGGDGIFSAGPARELLTYLEIARAPA 399

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-----------F 481
                + +L        E DI  I T+  +      +        I +            
Sbjct: 400 SAGGEINLLMK-KHGIPEGDIAVINTEAKKAAYNDIHGNDHVLEVIRRGGNSGVRKKAEL 458

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
             +++ + ++I +A   SP      I     G  + +        + L E        + 
Sbjct: 459 AGLVRRLDKVITLAGSYSPGTLAYHIAVPLAGLFRNLEDGA--GAEHLREACRLATEYDL 516

Query: 542 NSYSS-LQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 L  L+  L            A+    V + T+H +KG E   VF+ D       
Sbjct: 517 LDPRGGLDGLVGYLWAANSDKNLRSDADAGGAVEVTTIHKSKGREFDAVFIADAVEDRLP 576

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            K+  + + +P+       P                    K    +E  RLLYV MTRA 
Sbjct: 577 LKYKGRKYQVPTTLLHGRRP----------------QGKEKDRHMQEERRLLYVAMTRAK 620

Query: 660 DQLIICKHSNTSNEKKSNQRTWY---------DMVYDSFHNDERVKKIKLTNSINKDEWI 710
             L I      +++K  ++ + +          +V          +     ++++  +  
Sbjct: 621 KNLCITYSKEYASKKTESKPSRFLEEMQFRSNPLVRTFVFAGGPAQGAGTASTVSGLQEE 680

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKI-------PKKLFSPIK-------NDINEPYI 756
           A    +     T +++   +  L   ++        P    SP              P  
Sbjct: 681 AMRAVSVGDHGTAVQKVTDLAALEYMKEHGGLDGFVPPAARSPSPGLGAGAGPAKPAPLR 740

Query: 757 LNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLP---EHKRKNFI 805
           L+ + I T  K  L                    G +IHK+L+ I       +   +   
Sbjct: 741 LSSTKIGTYKKCPLMYWFAHVMTIPSPPGIPMVMGGVIHKVLEKITDAQMNGQTPDEAGA 800

Query: 806 TSYCT---KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
            +      K A       ++        ++         +      ++V  K        
Sbjct: 801 LAMLEGQLKYAVYDSRTSFEQSKEEAESMI--SWFVKWSAGSPNKPIAVEKKFELEIAGA 858

Query: 863 IISGRIDQISIS-QQNIFIFEYKTHH--HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
              G ID++  +    + + +YKT      P +I         QL++Y +  K  Y    
Sbjct: 859 EFRGSIDRVERTPDGGLVLIDYKTGRTKVSPGKIAEDV-----QLNLYAEAAKKLYKELP 913

Query: 920 LVCLLIYVSEPKVFI--IPQNKLNKAFAEI 947
              +L+Y+   +     + +  +  A   I
Sbjct: 914 EKAVLLYLESGETVEYRLDEASVKSAIGRI 943


>gi|116620297|ref|YP_822453.1| ATP-dependent DNA helicase Rep [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223459|gb|ABJ82168.1| ATP-dependent DNA helicase, Rep family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 788

 Score =  291 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 128/797 (16%), Positives = 250/797 (31%), Gaps = 142/797 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            + E    + +D+       VS  + +    +      + +      +       E++  
Sbjct: 66  EMRERVAALLEDVPLDSMPTVSTFHSFCVRLLRRDGDPLARVRPGFTRRFTIYDDEDQLQ 125

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           ++ + + T  F  ++ +  +    +    K      Q+ F    ++ +            
Sbjct: 126 IIKAAYRTLGFDEKEFMQYRAALSRISHAKNTKVTPQEMFRDAVNKESEA---------- 175

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                L   YE+A +    LDF+DL++    LL+  D +   R   ++ +++++IDE QD
Sbjct: 176 --VAALYEEYEKALRNANALDFDDLLLEAVRLLRTDDAT---RESWNRRLSYVMIDEYQD 230

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E++R LTE            + +  VGDE QSIYS+ GA+ K +L  ++   + 
Sbjct: 231 TNRSQYELMRLLTEQ----------HQNVCVVGDEDQSIYSWRGADIKNILDFEKDYPR- 279

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL     V    +  +G                     
Sbjct: 280 -------AKTIRLEQNYRSTKNILAAAGAVVENNKARKGKK------------------- 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +     + +DS  +       A  IA T    + ++       
Sbjct: 314 --LW-------TESDSGELLGLYAGYDSENE-------ALFIADTTEKYLASNPGDH--- 354

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                   + +L R    +  I    R     Y         F       IKD++A  + 
Sbjct: 355 --------VAILYRTNSQSRQIEEALR----RYGRKYNVVGGFSFYQRAEIKDMVAYLKL 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQH--- 483
             S  D +S + ++ +P        + +I    R     ++E I++  +      +    
Sbjct: 403 ASSNVDSVSLMRVINTPARGIGRTTVEQIERYGRDHGLNLWESIERIIDDQQLSTRSQSS 462

Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
                  I EL  +A   S  D    IL     R+        E    ++ LDE +N   
Sbjct: 463 LVVFRNLIQELSLVASTSSLPDLIRHILERTGYRKMLQQEKTPESETRLENLDELINAAA 522

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              +      + L   L+              + V +MT+H AKGLE P+VFL      +
Sbjct: 523 DAHERG----ETLGDFLDNAALVADVDSYDEQSPVTLMTLHNAKGLEFPLVFLSGMELGL 578

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H                                                   YVGMTR
Sbjct: 579 FPHSRSMNSEEALEEERRL----------------------------------CYVGMTR 604

Query: 658 ASDQLIICKHS-----NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           A  +L++             +++S    +   V ++   +   +       +  + +   
Sbjct: 605 ARKKLVLTWAKMRRRFGGGEQERSTASWFLSEVPENLIFNLGPRDEPGEVDLYSERYDVR 664

Query: 713 EWSTHHP------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           + +  +        +     +   ++ +  +        P  +    P    P       
Sbjct: 665 QSARRNTYTGKTYNSLDNISQFFGERGLPFKPGQSAPAPPKPDLRTPPQYPRPIGSAPMP 724

Query: 767 KTNLESLLSDNQTFNRG 783
              +       +    G
Sbjct: 725 MKQVPPPPPPRKGARAG 741


>gi|54026969|ref|YP_121211.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
 gi|54018477|dbj|BAD59847.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
          Length = 842

 Score =  291 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 102/673 (15%), Positives = 193/673 (28%), Gaps = 143/673 (21%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
               +            L   +   Y+   +    LDF+DLI  T  LL+       +  
Sbjct: 201 PEQASADAESDESELPGLVARVYTEYQRRLRAANALDFDDLIGETVALLQNHP---QVAE 257

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS--SPRTLFAVGDEKQSIYSF 229
              +   H+L+DE QDT+  Q+ ++R L        +T     P  L  VGD  QSIY+F
Sbjct: 258 YYRRRFRHVLVDEYQDTNHAQYVLVRELVGHHSAADDTEDAVPPSELCVVGDADQSIYAF 317

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + +   +R               I L  ++RST +IL+  + V +  E  +    
Sbjct: 318 RGATIRNIEEFERDFP--------DAETILLEQNYRSTQNILSAANAVIARNEGRREKR- 368

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW                      +   +       A  +
Sbjct: 369 --------------------LW-------TDSGEGDLIVGYVADNEHDE-------ASFV 394

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I  ++                 D+ V  R   ++  +  +         +       
Sbjct: 395 AREIDRLVDQGE---------ANYGDVAVFYRTNNNSRALEEIF----IRMGLPYKVVGG 441

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
               +   ++D++A  R + + +D +S   +L +P     +     +     +    +  
Sbjct: 442 VRFYERKEVRDIVAYLRVLENPDDAVSLRRILNTPRRGIGDRAEACVAVHAEQRGIGFAA 501

Query: 470 IQKFANCGISKF---------QHVIKYIHELIHI-----AQFCSPHDFFTLILGAKKGRQ 515
             + A  G                +  + E+        A F    +    +L     R 
Sbjct: 502 ALRDAAEGKVALLNTRAQRAIAGFLDLLEEIRAAGEQADADFPDVGNVVEAVLDRTGYRA 561

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQN----------------------SYSSLQEL 550
           +  +    +    +D L+E ++                                 SL   
Sbjct: 562 ELEASDDPQDGARLDNLNELVSVAREFSSEAYNNAVAAREEGILPEQAEGEPDPGSLAAF 621

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           +  +     T +         V +MT+HTAKGLE PVVF+       F H          
Sbjct: 622 LERVSLVADTDQI-PDEGAGVVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDPT-- 678

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                              E  RL YVG+TRA  +L + +    
Sbjct: 679 --------------------------------ELAEERRLAYVGITRARQRLYLTRAVVR 706

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI--------NKDEWIAYEWSTHHPENT 722
           S   +         + +   +    ++++ + +         ++     +       E  
Sbjct: 707 SGWGQPVSNPESRFLQEIPDHLIEWRRLEPSPATRGIRKRGGDEGLERDWTRGDGWSEPR 766

Query: 723 PLEREETIKQLMD 735
           P  R+   ++   
Sbjct: 767 PGVRDRGPRRPAP 779


>gi|15840373|ref|NP_335410.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551]
 gi|31792138|ref|NP_854631.1| ATP dependent DNA helicase UVRD1 [Mycobacterium bovis AF2122/97]
 gi|57116803|ref|YP_177772.1| ATP-dependent DNA helicase II UVRD1 [Mycobacterium tuberculosis
           H37Rv]
 gi|121636874|ref|YP_977097.1| putative ATP dependent DNA helicase uvrD1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148660728|ref|YP_001282251.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148822158|ref|YP_001286912.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           F11]
 gi|167967811|ref|ZP_02550088.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           H37Ra]
 gi|224989345|ref|YP_002644032.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253800024|ref|YP_003033025.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231256|ref|ZP_04924583.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C]
 gi|289555271|ref|ZP_06444481.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           605]
 gi|294996434|ref|ZP_06802125.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis 210]
 gi|297633471|ref|ZP_06951251.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           4207]
 gi|297730456|ref|ZP_06959574.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           R506]
 gi|306775079|ref|ZP_07413416.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu001]
 gi|306782007|ref|ZP_07420344.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu002]
 gi|306783628|ref|ZP_07421950.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu003]
 gi|306787992|ref|ZP_07426314.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu004]
 gi|306792329|ref|ZP_07430631.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu005]
 gi|306796727|ref|ZP_07435029.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu006]
 gi|306802615|ref|ZP_07439283.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu008]
 gi|306806794|ref|ZP_07443462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu007]
 gi|306966993|ref|ZP_07479654.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu009]
 gi|306971186|ref|ZP_07483847.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu010]
 gi|307078913|ref|ZP_07488083.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu011]
 gi|307083471|ref|ZP_07492584.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu012]
 gi|313657784|ref|ZP_07814664.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN
           V2475]
 gi|61229774|sp|P0A5A3|PCRA_MYCTU RecName: Full=ATP-dependent DNA helicase pcrA
 gi|61229776|sp|P0A5A4|PCRA_MYCBO RecName: Full=ATP-dependent DNA helicase pcrA
 gi|13880539|gb|AAK45224.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551]
 gi|31617726|emb|CAD93835.1| PROBABLE ATP DEPENDENT DNA HELICASE UVRD1 [Mycobacterium bovis
           AF2122/97]
 gi|41353625|emb|CAE55341.1| PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD1 [Mycobacterium
           tuberculosis H37Rv]
 gi|121492521|emb|CAL70989.1| Probable ATP dependent dna helicase uvrD1 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124600315|gb|EAY59325.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C]
 gi|148504880|gb|ABQ72689.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720685|gb|ABR05310.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           F11]
 gi|224772458|dbj|BAH25264.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253321527|gb|ACT26130.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           1435]
 gi|289439903|gb|EFD22396.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           605]
 gi|308216426|gb|EFO75825.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu001]
 gi|308325244|gb|EFP14095.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu002]
 gi|308331626|gb|EFP20477.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu003]
 gi|308335437|gb|EFP24288.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339243|gb|EFP28094.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu005]
 gi|308342888|gb|EFP31739.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu006]
 gi|308346806|gb|EFP35657.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu007]
 gi|308350722|gb|EFP39573.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu008]
 gi|308355383|gb|EFP44234.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu009]
 gi|308359322|gb|EFP48173.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu010]
 gi|308363229|gb|EFP52080.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu011]
 gi|308366886|gb|EFP55737.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           SUMu012]
 gi|323720660|gb|EGB29738.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CDC1551A]
 gi|328459767|gb|AEB05190.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN
           4207]
          Length = 771

 Score =  291 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 113/741 (15%), Positives = 205/741 (27%), Gaps = 136/741 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +      +              +            + L         ++   
Sbjct: 79  AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + +          +    
Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L        N    P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +     +                      
Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +  +  +         I           +   I+D++A  R 
Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478
           + +  D +S   +L +P     +     +     +      + +   A            
Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 ++   EL          +    +L     R++  +    +    +D L+E ++ 
Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542

Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581
                           +         L   LE+            H    V +MT+HTAK
Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE PVVF+      +F H                                         
Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPT--------------------------------- 629

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
               E  RL YVG+TRA  +L + +    S+  +         + +        ++    
Sbjct: 630 -ELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPK 688

Query: 702 NSINKDEWIAYEWSTHHPENT 722
            S +     A  + +  P  T
Sbjct: 689 PSFSAPVSGAGRFGSARPSPT 709


>gi|241889348|ref|ZP_04776649.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella
            haemolysans ATCC 10379]
 gi|241863891|gb|EER68272.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella
            haemolysans ATCC 10379]
          Length = 1217

 Score =  291 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 158/1022 (15%), Positives = 347/1022 (33%), Gaps = 152/1022 (14%)

Query: 28   VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ------ 81
            +   NK   L+ +    T +   + +QQ       E    +LS   L +    +      
Sbjct: 233  IDKFNKVSELTQKESIATAIDFCKYVQQYLINCKKESSLDILSLVNLDETKKEKLARYVD 292

Query: 82   -KNIITQEINKKSPDLKEKLKKSQDEFIK----------------IRDRFNTYKMFKSTL 124
              +I  +   ++  ++KE + K   +F                  + D  N +++ +   
Sbjct: 293  EDDISIKSNQEQLEEIKELISKLNTQFETEDNIFDAGLLSEVHGVLIDYLNYFRVIEKMN 352

Query: 125  ASLT----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQE 176
                    L K L+  + + K++N  LDF DL       L + +    V +         
Sbjct: 353  LLAKSITSLLKKLHNDFIKRKRENNFLDFSDLNHLAIKALTREENGEIVPSEAAQYYKNY 412

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               I +DE QD + +Q  ++  +  +              F VGD KQ+IY F G+ P  
Sbjct: 413  FLEIYVDEYQDNNNLQEYILNLIKGE----------GVHFFRVGDVKQAIYGFRGSNPDL 462

Query: 237  VLREKRINQKRATNA-----------GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
              ++    +K   +              +   I L  +FRS  +IL   + +F+     +
Sbjct: 463  FEQKYNSYRKLEIDNYSEKQEYSFESDSEGICIVLKENFRSDVNILKSSNYIFNRLMGNK 522

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                           +  +  + ++    +            ++ +      ++S     
Sbjct: 523  NAGVSYGEDSALYYPKAKEKNSSEIIPTRLINGK-------INYFTGELLEDKKSYREQS 575

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
               IAY I   I              +  D  +LVR          +       Y I + 
Sbjct: 576  IENIAYEILLGIKNGR----------KYSDYAILVRNSTKMSSFKEVF----AKYNIPLF 621

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
              ++   T+      L  + RF+ +   D S + +L + +F++S D++ K+   + +   
Sbjct: 622  FKEKVGFTESNTFNILYNILRFLDNTNRDASLLAILHTEIFDYSNDELLKLSITKGKNL- 680

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                 ++  N    K  + +  + + ++ +   S  +    I      +   ++    +E
Sbjct: 681  ----FERLQNSEKEKDYNTVNLLKKWLNFSLNNSLPNLLECIAIDTDFKNYLVTIDTNDE 736

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKG 582
             +D  + F++     +      L  L+++L+               ++ V + T+H +KG
Sbjct: 737  ELDYYENFIDIVNDYQNIDNK-LSGLVNQLKIIKNDEVFETKKRTPNDSVTLSTIHISKG 795

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMP-------SLNDDPGIPIWIPQSKSRNNIVSDL 635
            LE  +VF+ D  +      +  ++           +        +     +  N +    
Sbjct: 796  LEYKIVFVADLDTSFSKRGYTGELLFTEIFGLSIKAEELAQKFGLISSNIEKLNQLYKYN 855

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-NEKKSNQRTWYDMVYDSFHNDER 694
               +K   +EE  R LYV +TRA + L +   +    N +K+  +  Y  + +  + ++ 
Sbjct: 856  SILIKLREREEEVRNLYVALTRAENSLHLVSPNGVELNNEKTKDKPLYQSLIEDDNFEKI 915

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE- 753
            +  +              +      E+ PL ++E      D Q+  K+  S  +++ ++ 
Sbjct: 916  LNNLLSDYGEEFIFENEKDALFKDYESEPLVKDEEDSSGFDLQEFYKQFESKQQDESSKQ 975

Query: 754  -------------PYILNPSTIDTKGKTNLESL-----------------LSDNQTFNRG 783
                         P   + S +      + E                    S ++   RG
Sbjct: 976  SDNHTIEVKNKVFPAKTSYSALKKINTKDHEWNYKKEKRGYLELTTLKKSTSTSKAILRG 1035

Query: 784  LIIHKLLQVIFTLPEHKRK--------------NFITSYCTKNAKLWPAKEYKNL----- 824
             IIHKL + I        +              + +     +  ++   +E+ N+     
Sbjct: 1036 NIIHKLFEKIVNDTRAGVEISDVVSYIDSLKKTDNLLQNIKEQ-RILSQEEFDNINNKDD 1094

Query: 825  LLSITRLLENPMMTTA-MSCDSYSEVSVS-----GKINCPKK---DIIISGRIDQIS-IS 874
            +  IT  + + ++     S    +E++ +      ++    +   D+I+ G +D    IS
Sbjct: 1095 IEKITNFINSELIKLVSKSKFCQTEIAFTTAKKAKELYDDSESDIDVILQGVVDLFIKIS 1154

Query: 875  QQNIFIFEYKTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
             +   I +YKT H   +  E  +   H  QL IY++ + + Y   ++   +       + 
Sbjct: 1155 DEEAIIVDYKTDHVTSRNGEEVLRDRHREQLRIYKEAVAEYYKLNNIKTYVYSYVLSSLI 1214

Query: 934  II 935
             I
Sbjct: 1215 EI 1216


>gi|258593628|emb|CBE69969.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 991

 Score =  291 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 140/901 (15%), Positives = 280/901 (31%), Gaps = 132/901 (14%)

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
           +   + F  L S     +   Q     ++ +          ++         D     + 
Sbjct: 139 ELPLDYFRPLGSPLRHVQALLQLFSRAKDEDVGPEQYASYAEELVGRATAAPDDKTLAEQ 198

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
               +        +   Y+E   +   LDF DL++ T DLL++  +   +  ++ +   +
Sbjct: 199 ATREMEI----ARVYRQYQELMAREGKLDFGDLMVRTLDLLREHPL---VLQRLQERFRY 251

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           IL+DE QDT+  Q+++++ LT           S R +  VGD+ QSI+ F GA    +L 
Sbjct: 252 ILVDEFQDTNYAQFQIVKLLTA----------SHRNVTVVGDDDQSIFKFRGASISNILS 301

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +R               I L  ++RST+ +L    ++     N   L        R + 
Sbjct: 302 FRREFP--------DAETIVLAENYRSTSSVLDAAYRLIQHN-NPDRLEYQEGVDKRLKP 352

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                   V+       Q +                          A  +   I  +I  
Sbjct: 353 CNGDGP-AVESVVFQTYQEE--------------------------ADWVVEKIEELIEA 385

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                    +     DI +LVR+  D      L R L     I    +    L D   I+
Sbjct: 386 ---------KACALGDIAILVRRNSDA---DPLLRALNMK-GIPWSFSGAKGLYDRDEIR 432

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYE---------- 468
            +++  R +    D LS   +  S ++     D+       R +  ++YE          
Sbjct: 433 LVISFLRLLADPYDSLSLFHLAGSDIYGLPAADLTLCNAHARRKHRSLYEVLLDLTRRPG 492

Query: 469 YIQKFANCGISKFQHVIKYIHELIHI----AQFCSPHDFFTLILGAKKGRQQFISRF--- 521
            + + +             + +L       A+  +    +  ++      ++ +      
Sbjct: 493 AVPELSGVSTEGIAAATALLSDLHRYLDKAAREVTGRILYEFLMEQPGYGKRLLHSNSSR 552

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEVRIMT 576
            ++ I  L  F     R  + +        +  L   +E           A    V ++T
Sbjct: 553 DHQRISNLAAFFGLVQRFGEVAPQDRVAGFVPYLTMLIEAGENPPVAEGEAAEEGVAVLT 612

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE   VFLV    + F     ++   +P       +P                 
Sbjct: 613 LHKAKGLEFEAVFLVGLVEKRFPSIDRREAIPLPDELIKETLPSGDFH------------ 660

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                  Q+E  RL YVGMTRA   L + +  +   +++      +             +
Sbjct: 661 -------QQEERRLFYVGMTRAKRHLFLTRAKDYGTKRE------WKRSRFLAEALALPR 707

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
           + +        E +   ++        L         +   +I   L  P+K        
Sbjct: 708 EEEEQPWRGTAEAVIGRYAPPPQVAIDLAIRADTPLSLSHYQIDDYLTCPLKYKYVHILR 767

Query: 757 LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
           +                +    T   G  +H+ +Q   T     +   +          W
Sbjct: 768 V---------------PVLREHTIIYGAALHRAVQAYNTQRLTGQTMSLDDLIKSFEAHW 812

Query: 817 PAKEYKNLLLSITRLLE-NPMMTTAMSCDSYSEVS--VSGKINCPKKDIIISGRIDQISI 873
             + + +      R+ E    +T   +  +   +   V  +      D +++G +D++  
Sbjct: 813 VNEGFISREHEERRMQEGRDALTRFHAGAAKGPLPTSVEKRFRFQLGDDLVTGIMDRVDE 872

Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
            +    I +YK+     Q+          QL++Y    ++S         L +++   V 
Sbjct: 873 REGETVIIDYKSSSVRDQKAADKEARESQQLALYALAYRESIGRLPDRVELHFLTPGGVI 932

Query: 934 I 934
           +
Sbjct: 933 V 933


>gi|225850544|ref|YP_002730778.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1]
 gi|225645384|gb|ACO03570.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1]
          Length = 696

 Score =  291 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 109/566 (19%), Positives = 196/566 (34%), Gaps = 110/566 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YEE    +  +DF+DL+IN   L  +      I  +     ++IL+DE QDT+ +
Sbjct: 167 EIYKKYEEHLAFSNAMDFDDLLINVVKLFNQNPD---ILKRWQNRFDYILVDEYQDTNKV 223

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q ++++ L  D             +  VGD +Q IY++ GA P+ +L  ++         
Sbjct: 224 QHQILKLLVGD----------RDCITVVGDPQQCIYTWRGANPENILEFEKDFP------ 267

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST  IL++ +KV S  +                            W
Sbjct: 268 --GTKIIKLERNYRSTEKILSIANKVISGSKGR--------------------------W 299

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           ++ + +  +     ++ +    D+          +  I   I  +I  +           
Sbjct: 300 KEKILKLWTDRKGGEDIYLIRLDT------DKHESGFIGKMIKKIISDE---------GY 344

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D  VL+R    +  I      LK    I           +   +KD++A  RF L  
Sbjct: 345 SYRDFAVLIRMSYVSRNIEEAFINLK----IPYQIVGGVKFFERAEVKDILAYLRFALLP 400

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +D  +F  ++  P     +  I KI    +R   + + +     +     + Q  ++ I 
Sbjct: 401 KDTQAFKRIINLPSRGIGDKTIEKIRSFYERDWLQALEDSYNHLSPKIRMRVQEFLEIIE 460

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQNSYSS 546
            +        P      +  A    +  +S++     + I  ++E  N     E++  S 
Sbjct: 461 TVRKY-GNEKPSQMAKYVFDAINYEEYLVSKYPKDYEDRIANVNELFNALKEVERSGKSL 519

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L      LE+   +  +      N V+IMTVH +KGLE PVVF+      +F        
Sbjct: 520 L----EFLEESSLSQAQDSIQEENSVKIMTVHASKGLEFPVVFIAGLEEGIFPSGRSF-- 573

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                                 EE  RL YV +TRA ++L +  
Sbjct: 574 --------------------------------EDIEQMEEERRLFYVAITRAKEKLFLTY 601

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHND 692
               +        T          +D
Sbjct: 602 SKYRAGYGSHYNETKPSRFLQDIKDD 627


>gi|310778912|ref|YP_003967245.1| ATP-dependent DNA helicase, Rep family [Ilyobacter polytropus DSM
           2926]
 gi|309748235|gb|ADO82897.1| ATP-dependent DNA helicase, Rep family [Ilyobacter polytropus DSM
           2926]
          Length = 725

 Score =  291 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 106/553 (19%), Positives = 190/553 (34%), Gaps = 119/553 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y    K N  +DF D+I+NTN L+        IR K+     ++++DE Q
Sbjct: 167 YKTVSSVYKKYNSGLKNNNAMDFADIIVNTNRLM----DIQKIREKVQDRYQYVMVDEYQ 222

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ IQ+++I  + E +          + +  VGDE QSIY F GA  + +L  ++   +
Sbjct: 223 DTNNIQYQIINKIAEKY----------KNICVVGDEDQSIYGFRGANIQNILDFEKDYPE 272

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RSTA IL   + +    E+++G +                  
Sbjct: 273 AF--------VIKLEQNYRSTAHILEAANSIIKNNESSKGKN------------------ 306

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW       +         +        +   A   A  +   I+ +  ++      
Sbjct: 307 ---LW------TEKNKGELIRIF--------ESDDARHEAYLVLQEINRLKNSNR----- 344

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                  KD  +L R    +         L   + I             + IKD+MA   
Sbjct: 345 -----NYKDFTILYRTNAQSRAFEE----LFIKFNIPYKVFGGMQFYQRMEIKDIMAYLN 395

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK----- 480
            I +  D L+ + +L  P        + KI     ++  +++E + +             
Sbjct: 396 VINNSLDSLNLLRILNVPKRKIGVKSVEKIAEFAENKGVSIFEALGRSEEIEGLSKNLKI 455

Query: 481 -FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536
                   +   I  +Q+    + F  ++ +      ++   G E     + ++E  N  
Sbjct: 456 VLSEFHSMLLNFIEESQYMPVSEIFDGVVNSIGYFS-YLESLGEEAESRIENIEELRNSI 514

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
              E+N  +    L   LE               + V++MT+H +KGLE PVVF+V    
Sbjct: 515 SEMEKNQEN--LTLGEYLESTALISATDKLEEEQDYVKLMTIHNSKGLEFPVVFVVGVED 572

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
           +VF                                           +  EE  RL YV +
Sbjct: 573 EVFPGS----------------------------------KVEYDPTQLEEERRLCYVAI 598

Query: 656 TRASDQLIICKHS 668
           TRA ++L +    
Sbjct: 599 TRAEEKLYMYYAK 611


>gi|227543585|ref|ZP_03973634.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A]
 gi|300909386|ref|ZP_07126847.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112]
 gi|227186425|gb|EEI66496.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A]
 gi|300893251|gb|EFK86610.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112]
          Length = 757

 Score =  291 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 118/813 (14%), Positives = 239/813 (29%), Gaps = 153/813 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   N             + ++   L   S  +     
Sbjct: 31  GAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIWVST 90

Query: 66  FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-EFIKIRDRFNTYKMFKS 122
           F  L    L +           T     +   L +++    + +  K   R     +  +
Sbjct: 91  FHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAELNIDTKKFDPRSILSAISNA 150

Query: 123 TLASLT--------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
             A LT              +       Y++  + N  LDF+DLI+ T +LL+       
Sbjct: 151 KNALLTPDDYSKEANSMFENMVARAYKLYQQELETNQALDFDDLIMKTIELLESD---QE 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L + +          + L  VGD  QSIY 
Sbjct: 208 TLEFYQDKFHYIHVDEYQDTNDAQYRLVNLLAQKY----------QNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA    +L  +    +           + L  ++RST  IL   ++V +     +  +
Sbjct: 258 WRGANMNNILNFEHDYPQ--------AKTVMLEQNYRSTQTILNAANEVIANNLYRKKKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + S+    +   +       A+ 
Sbjct: 310 ---------------------LW-------TENGQGDKISYYRAQNEHDE-------AQF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I             +K      D  +L R    + ++            I      
Sbjct: 335 IVSKIKE---------EQEKHGYHFNDFAILYRTNAQSRMVEETF----LKSSIPYTMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY- 467
                D   I+D++A    I++  D +SF  ++ +P        +  +    +E      
Sbjct: 382 GHKFYDRREIRDILAYLTLIVNPADSMSFERVVNTPKRGIGLTSVEHLRNFANENGWTLL 441

Query: 468 ------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                 +   +      +K     + +  L   A++ +  D    IL      +      
Sbjct: 442 KAAQNVDTASEITARTRNKIDEFGQLMANLTKQAEYLTLTDLTEQILELSGYNKMLSDDR 501

Query: 522 GNE---VIDVLDEFLNFTLRNEQNS----YSSLQELISELEQYPPTIKRAH-SANHNEVR 573
             E     + LDEF + T   ++        +LQ++I+ L        +         V 
Sbjct: 502 SLEAQARRENLDEFKSVTQEYDEQHKDDDDPNLQKIINFLADLALVSDQDDVDEQAPAVT 561

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFLV     +F                                   
Sbjct: 562 LMTLHAAKGLEFPVVFLVGMEEGIFPLSRALMEDDELEEERRL----------------- 604

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                             YVG+TRA  +L +                +  ++Y     ++
Sbjct: 605 -----------------AYVGITRAKKKLYLT-------------NAFSRLLYGRIQRNQ 634

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             + ++  +S       +   ++      P +R               +     ++    
Sbjct: 635 PSRFVEEIDSELLQFENSPSGNSIKDSKLPFDRAAATAT-----TYRDQQKRTYRSAGKR 689

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
              +  +               +++ + +G ++
Sbjct: 690 VKPITNTGTGADKVGWKTGDKVEHKKWGQGTVV 722


>gi|253580235|ref|ZP_04857501.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848328|gb|EES76292.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1269

 Score =  291 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 123/731 (16%), Positives = 258/731 (35%), Gaps = 69/731 (9%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK----L 100
           + L   ++LQ+ ++ +       +L      +  T +   + ++  ++  DL+++    L
Sbjct: 253 SDLLLIRSLQELAEKRDYNGTAEILMKPSFARLSTKKAADVDEQKKQRVKDLRDEEKGIL 312

Query: 101 KKSQDEFIKIRDRFNTYKMFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           K+    + +  ++     +          + L       + EAK++  +LDF D+     
Sbjct: 313 KELGQRYFQSAEKELLEVIRYIRGPVEMLVELTVGFKERFGEAKREKNILDFTDMEHFAL 372

Query: 158 DLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            +L     +    +    ++  + + +L+DE QD++L+Q  +               +  
Sbjct: 373 QILMTKEGEEIHMSQAARELSAKYDEVLVDEYQDSNLVQELLT-------TAVSGWINQK 425

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           + +F VGD KQSIY F  A P+  + + +           +   I+L  +FRS   +L  
Sbjct: 426 KNIFMVGDVKQSIYRFRLARPELFMEKYKSYSTE----EAQEQRIDLHKNFRSREQVLES 481

Query: 274 VDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGT------VQLWEQVVSQHDSQCNPQ 325
           V+ +F     E+  G++ D    +   +S             V L E+   +     + +
Sbjct: 482 VNFIFRQIMGEDLGGITYDKDAALYPGASFPEGESEEFVKTEVLLVERDGEELSDVQDYE 541

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKR 383
               +     +  ++   + A  IA  I  ++G + I      + R ++  DI++L+R  
Sbjct: 542 DAGASGNRREMENQTGQELEALAIAQRIKEIVGKEQIVDKEKKEYRSVEYGDIVILLRT- 600

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                     R +     I V    R        I  ++   +   +   D+  + +L+S
Sbjct: 601 --AYGWAETFREVLASQGIPVYCTSRTGYFSATEIVTVLNYLKVCDNPLQDIPLMGVLRS 658

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------------------------ 479
           P+   +  ++ ++  Q  +               I                         
Sbjct: 659 PIVGCTSQELAELRIQYPDGLLYESVSAYAGENEIPEKELDPDKLKSELLNSNLRTDEKN 718

Query: 480 ----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLN 534
               K +  +  + ++ ++A +   H+    +L          +   G +    L   + 
Sbjct: 719 SLNIKLKGFLSLLEKVRNMATYTPVHELILYVLKETGYGDYARALPGGEQRFANLTMLVE 778

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVF 589
             +  E+ SY  L   +  +EQ               A +  V IMT+H +KGLE PVVF
Sbjct: 779 KAMDYEKTSYRGLFNFVRYIEQLQAYQVDYGEVNLTGAGNTAVEIMTIHKSKGLEFPVVF 838

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +   G Q         + + P L       I   +  + +     + + L K +  E  R
Sbjct: 839 VAGMGKQFNFQDMNAGLLLHPELGIGADAIIPEKRVIASSLNKQVIRRQLLKESLGEELR 898

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           +LYV MTRA ++LI+        ++  +   + D   +      R+K       +     
Sbjct: 899 VLYVAMTRAKEKLILTGTVGKLEKQMMSLSRFLDEEEELLPLGTRMKAKNYWAFVLPALV 958

Query: 710 IAYEWSTHHPE 720
                S    E
Sbjct: 959 RHRAMSELLWE 969



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 107/320 (33%), Gaps = 21/320 (6%)

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                 N  + ++  L +          Y  + +    +          +    Q T   +
Sbjct: 943  RMKAKNYWAFVLPALVRHRAMSELLWEYGILMKKQPGIYDDISEFVIKKITVRQMTEKAV 1002

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +  + +  +         +   DE +  E         P +  E I   +    + K+ +
Sbjct: 1003 LIQAGNQMQEEYLKNWDENKVYDEVVKEEIEKRFSFVYPYKYLEDIPVKVSVSDLKKRSW 1062

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKLLQVIFTLPEHK 800
               ++++ E   ++    D + +  + + +     + +   RG   H++++ +    E  
Sbjct: 1063 HD-ESELEENISVSAEEQDEEQEAPVPAFMAEKQEEYKGAARGTAYHRVMECL-DYAEAD 1120

Query: 801  RKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA----MSCDSYSEVSV-- 851
             +  + +   +   ++    +E + + +  I R +E+ +        M    Y E     
Sbjct: 1121 TEEQLRAQLKRLLESQKMTEQEAECIRIRDIRRFVESGLGQRMKKAAMKKHLYREQPFVI 1180

Query: 852  -----SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
                         + +++ G ID   + ++ I + +YKT      + + +   +  QL  
Sbjct: 1181 QRNASMLDDGWKNETVLVQGIIDAYFMEEEEIVLVDYKTDRVRRGQEQKLINLYHVQLED 1240

Query: 907  YEKILKDSYPNKSLVCLLIY 926
            Y + L+     K +   +IY
Sbjct: 1241 YARALERM-TGKRVKEKIIY 1259


>gi|297581630|ref|ZP_06943552.1| DNA helicase II [Vibrio cholerae RC385]
 gi|297534037|gb|EFH72876.1| DNA helicase II [Vibrio cholerae RC385]
          Length = 723

 Score =  291 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 117/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++   +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +  R             + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N         S     ++ I+ L         H      +      + +    G 
Sbjct: 441 SIGLLNDQVLTGRAASALSRFVELINSLEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P+VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|76798891|ref|ZP_00781098.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21]
 gi|76585760|gb|EAO62311.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21]
          Length = 644

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 118/715 (16%), Positives = 221/715 (30%), Gaps = 139/715 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC---- 61
           G    ++  L ++  + +    V+  N             + ++A  L  A+Q       
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPATQDTLIATF 87

Query: 62  ---------IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEF 107
                     E  +   +  F       Q+ ++ + I + + D      +  L    +  
Sbjct: 88  HSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQLNLDTKKWNERSILGTISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D     K          +       Y+E  +++  +DF+DLI+ T  L  +     
Sbjct: 148 NDLLDEIAYEKQAGDMYT--QVIAKCYKAYQEELRRSEAMDFDDLIMMTLRLFDQN---K 202

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 203 DVLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++   +          ++ L  ++RST  IL   + V +  +N +  
Sbjct: 253 GWRGADMQNILDFEKDYPQ--------AKVVLLEENYRSTKKILQAANNVINHNKNRRPK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW             +Q  +    +   +       A 
Sbjct: 305 K---------------------LW-------TQNDEGEQIVYHRANNEQEE-------AV 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TI N++                KD  VL R    +  I            I     
Sbjct: 330 FVASTIDNIVREQGK---------NFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMV 376

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     I+D++A    + +  D++SF  ++  P        + KI      +  ++
Sbjct: 377 GGTKFYSRKEIRDVIAYLNILANTSDNISFERIVNEPKRGVGPGTLEKIRSFAYEQNMSL 436

Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                    +   I  L       +  +    +L      +    + 
Sbjct: 437 LDASSNVMMSPLKGKAAQAVWDLANLILTLRSKLDSLTVTEITENLLDKTGYLEALQVQN 496

Query: 522 GNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISEL-EQYPPTIKRAHSANHNE 571
             E    I+ ++EFL+ T   +          + L  L   L +          +    E
Sbjct: 497 TLESQARIENIEEFLSVTKNFDDNPEITVEGETGLDRLSRFLNDLALIADTDDSATETAE 556

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     VF                                 
Sbjct: 557 VTLMTLHAAKGLEFPVVFLIGMEEGVFPLS------------------------------ 586

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                        EE  RL YVG+TRA   L +   +  +   K++       + 
Sbjct: 587 ----RAIEDADELEEERRLAYVGITRAEQILFLTNVNTRALFGKTSYNRPTRFIR 637


>gi|25027486|ref|NP_737540.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
 gi|23492768|dbj|BAC17740.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 825

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 211/705 (29%), Gaps = 152/705 (21%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K    + ++    +LK +L    +         N ++         T+   +   Y++  
Sbjct: 174 KKFSARTLSSAISNLKNELISPSEALADAERTHNPFE---------TVVARVYVEYQQRL 224

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           ++   +DF+DLI     +  +      +     +   H+LIDE QDT+  Q+++I  L  
Sbjct: 225 RRANAVDFDDLIGEVVRIFTEHP---QVAEHYRRRFRHVLIDEYQDTNHAQYQLIAILVG 281

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                      P  L  VGD  QSIY+F GA  + +   +R               I L 
Sbjct: 282 RP------DQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDF--------TDARTILLE 327

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL+  + V S  EN +  +                     LW  +       
Sbjct: 328 QNYRSTQTILSAANAVISQNENRRPKN---------------------LWTAL------G 360

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              +   + +  +           AR IA  I  +              +   D+ ++ R
Sbjct: 361 EGEKIIGYVADNEHDE--------ARFIASEIDELADRG----------LSYSDMAIMYR 402

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +  +         +           +   I+D++A  R + + +D ++   ++
Sbjct: 403 TNNSSRALEEVF----IRTGVPYKVVGGTKFYERKEIRDVIAYLRVLENPDDTVNLRRII 458

Query: 442 KSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGIS-----------KFQHVIKYIH 489
            +P     +     +     +   +  + +   A   +            KF  ++  + 
Sbjct: 459 NTPKRGIGDRAQAFVALHAENNRISFGQALVDAAAGNVELLGGRGRNAVGKFNELMDTLR 518

Query: 490 -ELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
            EL+ +    +         + IL     + +  +    +    +D L+E ++       
Sbjct: 519 GELLSMVNEVTGMPDIGQVISRILDITGYKAELEASNDPQDGARLDNLNELVSVAREFSS 578

Query: 542 N----------------------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           +                      +  SLQ  +  +       +         V +MT+HT
Sbjct: 579 DAANRMAYDTMDGSEPELDDSEPAPGSLQAFLERVSLVADADQI-PDNEQGLVTLMTLHT 637

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFL       F H                                  L    
Sbjct: 638 AKGLEFPVVFLTGWEDGQFPH----------------------------------LRSLG 663

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                 E  RL YVG+TRA  +L + +    S+            + +        ++ +
Sbjct: 664 DAKELAEERRLAYVGITRARQRLYVTRAMLRSSWGNPVTNPASRFLQEVPEGLIDWRREE 723

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
             NS       +         +     +             K+  
Sbjct: 724 PANSFGSAWAPSGSPYGGGHPSGGYGSQTRRSAPSRPSIPTKQSR 768


>gi|317121134|ref|YP_004101137.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM
           12885]
 gi|315591114|gb|ADU50410.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM
           12885]
          Length = 791

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 103/601 (17%), Positives = 190/601 (31%), Gaps = 114/601 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A Y+E  ++N  +DF+DL++    LL   + +  +     +   HIL+DE QDT+
Sbjct: 168 VAAVYAAYQERLQRNGAMDFDDLLMQAVRLL---EEAPDVLAYYQRRFVHILVDEYQDTN 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++R L              R LF VGD  QS+Y + GA+   +LR +        
Sbjct: 225 HAQYRLLRLLAA----------GHRNLFVVGDPDQSVYRWRGADITNILRFEEDYP---- 270

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L L++RSTA IL     V       +     S                  
Sbjct: 271 ----DARVVRLELNYRSTASILGAAQAVIEHNTQRKEKQLRSVH---------------- 310

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                           +       D   +       A  +A  +  + G +         
Sbjct: 311 ------------GEGARVVVFGAADEHDE-------AWFVAREMERLHGEE--------- 342

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                ++ VL R    + ++            I           +   +KD++A  R  +
Sbjct: 343 GYGYGEMAVLYRTHAQSRVLEETL----LRRGIPYRIVGGLKFYERKEVKDILAYLRLAV 398

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFA------NCGISKFQ 482
           + +D +S   ++  P     E  + ++      E   + + + +            +   
Sbjct: 399 NPDDRISLRRVINVPRRGIGEATLARLEAYLDREGVGLLDALARAEDIPGVTRPQAAALM 458

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539
                I +L  +A+    +D   L L     ++        + +   + L E L+     
Sbjct: 459 AFGGVIADLRAMAEQRPAYDVIALALDRTGYKEMLEQEQTPDAMSRLENLKELLSVARDF 518

Query: 540 EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E+   +    L+  L +    +           V +MT+H+AKGLE  VVF+      VF
Sbjct: 519 ERQRGAGDAPLVDFLAEVALVSDVDQLDEGARAVSLMTLHSAKGLEFDVVFITGMEEGVF 578

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                            EE  RL YVGMTRA
Sbjct: 579 PHSRSLDDP----------------------------------HELEEERRLCYVGMTRA 604

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             +L +C     +    + ++     + ++       + +   +           W    
Sbjct: 605 RRRLYMCFTRQRTLFGATRRQVPSRFLEEADQRYLEWQGLPPGSDEPAFGDGGDAWEAGA 664

Query: 719 P 719
           P
Sbjct: 665 P 665


>gi|15640220|ref|NP_229847.1| DNA-dependent helicase II [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121728028|ref|ZP_01681067.1| DNA helicase II [Vibrio cholerae V52]
 gi|147675309|ref|YP_001218450.1| DNA-dependent helicase II [Vibrio cholerae O395]
 gi|153818562|ref|ZP_01971229.1| DNA helicase II [Vibrio cholerae NCTC 8457]
 gi|153821587|ref|ZP_01974254.1| DNA helicase II [Vibrio cholerae B33]
 gi|229507007|ref|ZP_04396515.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286]
 gi|229509377|ref|ZP_04398860.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33]
 gi|229516324|ref|ZP_04405772.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9]
 gi|229606515|ref|YP_002877163.1| DNA-dependent helicase II [Vibrio cholerae MJ-1236]
 gi|254226330|ref|ZP_04919920.1| DNA helicase II [Vibrio cholerae V51]
 gi|254851318|ref|ZP_05240668.1| DNA-dependent helicase II [Vibrio cholerae MO10]
 gi|255744002|ref|ZP_05417956.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101]
 gi|262153639|ref|ZP_06028766.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1]
 gi|262167390|ref|ZP_06035098.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27]
 gi|9654595|gb|AAF93366.1| DNA helicase II [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121629731|gb|EAX62150.1| DNA helicase II [Vibrio cholerae V52]
 gi|125621135|gb|EAZ49479.1| DNA helicase II [Vibrio cholerae V51]
 gi|126510901|gb|EAZ73495.1| DNA helicase II [Vibrio cholerae NCTC 8457]
 gi|126520874|gb|EAZ78097.1| DNA helicase II [Vibrio cholerae B33]
 gi|146317192|gb|ABQ21731.1| DNA helicase II [Vibrio cholerae O395]
 gi|227012037|gb|ACP08247.1| DNA helicase II [Vibrio cholerae O395]
 gi|229346750|gb|EEO11720.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9]
 gi|229353692|gb|EEO18629.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33]
 gi|229356112|gb|EEO21031.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286]
 gi|229369170|gb|ACQ59593.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae MJ-1236]
 gi|254847023|gb|EET25437.1| DNA-dependent helicase II [Vibrio cholerae MO10]
 gi|255738267|gb|EET93658.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101]
 gi|262024192|gb|EEY42885.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27]
 gi|262030580|gb|EEY49217.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1]
          Length = 723

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 117/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++   +LL+       IR
Sbjct: 151 KDEGLRPTHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +  R             + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TDGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N         S     ++ I+ L         H      +      + +    G 
Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P+VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|307284517|ref|ZP_07564679.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860]
 gi|306503194|gb|EFM72448.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860]
          Length = 791

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 216/635 (34%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 70  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L+    + +  +     L     R+  +++  
Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLMKTVPYLTITELVKETLQRSGYREALMAQNN 540

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633


>gi|88808097|ref|ZP_01123608.1| UvrD/REP helicase [Synechococcus sp. WH 7805]
 gi|88788136|gb|EAR19292.1| UvrD/REP helicase [Synechococcus sp. WH 7805]
          Length = 794

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 106/630 (16%), Positives = 210/630 (33%), Gaps = 99/630 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y +A   N  LDF+DL++    LL++ +    +R    +   H+L+DE QD
Sbjct: 202 KLTADVYRRYRKALAANNALDFDDLLLMPVQLLQQNE---QVRGYWHRRFAHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++I+ L  D    +   + + R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYDLIKLLVTDGKDPQTYDNWTGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +  +   + ++++L  ++RSTA IL   + + +            T              
Sbjct: 319 QEPDEATR-TMVKLEENYRSTATILEAANALIANNSERIDKVLRPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  S T   D + +       A  + + +  M          
Sbjct: 365 ---------------GEGELISLTRCDDEIAE-------AEAVVHRLRMM--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+  L R    +  +          ++I  V        D   IKD++   R
Sbjct: 395 ANPELTWGDMACLYRTNAQSRALEESL----VRWRIPYVVVGGLRFYDRREIKDVLGYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  I ++    ++    ++      E ++        
Sbjct: 451 LLINPADTVSLLRVINVPKRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAR 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + I+ L        P +    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCELINGLRERVSTTPPSELIQQVMELSGYVSELITEGSDEAEERRRNLQELVNAG 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N    L+  ++          +      + V +MT+H++KGLE PVV LV    
Sbjct: 571 LQYQEENEEGDLEGFLASAALASDADSKD--TAADRVTLMTLHSSKGLEFPVVCLVGLEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +            +I  +           +  
Sbjct: 655 TRAKERLFLSHASERRLWGGMREPAVPSVFLSELPEALVQGEIPRSGGAAIRREQRLDRL 714

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFS 745
           T      P        +       P + +S
Sbjct: 715 TRVDREQPSSAPANAVRRRQAGPAPGRSWS 744


>gi|156564011|ref|YP_001429750.1| PcrA helicase [Bacillus phage 0305phi8-36]
 gi|154622708|gb|ABS83588.1| PcrA helicase [Bacillus phage 0305phi8-36]
          Length = 657

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 120/679 (17%), Positives = 228/679 (33%), Gaps = 128/679 (18%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMET-GNPTILKKAQTLQQASQTQCIEERFSLL-SSFF 73
           +   + P     V+  NK  +   E  GN     +A+ +   +             S   
Sbjct: 60  LENGIDPRRILTVTFTNKAATEMKERIGNEVGEARAKKIMIGTFHSLAVRWLHQYYSEAG 119

Query: 74  LTQKFTPQKNIITQEINKK------SPDLKEKLKKSQDEFIKIRDRFNTYKMFKS-TLAS 126
           L + +T   +  T ++ K+        D K+ +  +Q     +++     K F+      
Sbjct: 120 LKKNWTIFDSEDTNKVIKELLKSNNMDDSKQNVYATQSRISNLKNDMILPKDFRKQMEPQ 179

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y++   +N  +DF+DLI+    LL+       +R K  +   +I+ DE Q
Sbjct: 180 DKSFARIYERYQDRMARNNAVDFDDLIMKMVILLESN---TEVRRKFQRRYKYIMCDEYQ 236

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ +I+++  D             +F VGD+ Q IY + GA  +++L  ++    
Sbjct: 237 DTNECQYRMIKNIVGD----------KNNIFVVGDDYQGIYGWRGANIEKILNFQKDYP- 285

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +++L  ++RST  I+T  + +                             
Sbjct: 286 -------GTKVVKLEQNYRSTNTIVTAGNAIMKHNTKQMNK------------------- 319

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                       D     +   + +  D           AR IA  I N+          
Sbjct: 320 --------TCFTDKGMGEKIRKYEAPDDE--------QEARFIAQEIQNL---------C 354

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                + +DI +L R    + L+          + I       F   +   IKD+M+  +
Sbjct: 355 TFDGYKYEDIALLYRTNVQSRLLEDQF----IRHNIPYNMVSGFSFYERKEIKDIMSWMQ 410

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHV- 484
             ++ ++D++   +L        +  I +I      + +++YE ++ F            
Sbjct: 411 LAVNPDNDIACDRILNMQA-GVGKTTIKQIKDKANEKNKSIYEVVEYFNPKTAKAKAAFV 469

Query: 485 -----IKYIHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
                +  ++ L             D   LI    +  ++       E    ID + E  
Sbjct: 470 GLTDTVARLNALYEAGKSVSDQPITDMLELIFKYTQYIEKLQETGKEEDFRRIDNIKELT 529

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 EQ +      L   L+Q     ++    N ++V++MT+HT+KGLE PVVF++  
Sbjct: 530 KIAKGYEQENKD--PHLQDFLDQIALQSQQDKVVNQDKVQLMTLHTSKGLEYPVVFMIGM 587

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F H       +                                    EE  RL YV
Sbjct: 588 EEGLFPHSRSLSDTV----------------------------------QLEEERRLAYV 613

Query: 654 GMTRASDQLIICKHSNTSN 672
           G+TRA + L         +
Sbjct: 614 GITRAQEILYFTHAERRMD 632


>gi|290580396|ref|YP_003484788.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025]
 gi|254997295|dbj|BAH87896.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025]
          Length = 758

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 106/665 (15%), Positives = 205/665 (30%), Gaps = 121/665 (18%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +  L    +    + D          +     L       Y+   +++  +DF+DLI+ T
Sbjct: 137 RAVLAAISNAKNDLLDEIAYENRAGDSYT--QLVAKCYKAYQSELRQSEAMDFDDLIMLT 194

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L  +      +     Q   +I +DE QDT+  Q+++++ L   F          + +
Sbjct: 195 LRLFDQNPD---VLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNI 241

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD  QSIY + GA+ + +L  ++   +          ++ L  ++RS+  IL   + 
Sbjct: 242 CVVGDADQSIYGWRGADMQNILDFEKDYPE--------AKVVLLEENYRSSKKILQAAND 293

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V     N +                        LW           + +Q  +    D  
Sbjct: 294 VIKNNRNRRDKK---------------------LW-------TQNDDGEQIVYYRADDEQ 325

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +       A  +A TI+N++                KD  VL R    +  I       
Sbjct: 326 DE-------AVFVASTIANIVRE---------MGKNFKDFAVLYRTNAQSRTIEEAL--- 366

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                I               I+D++A    I +  D++SF  ++  P        + KI
Sbjct: 367 -LKSNIPYTMVGGTKFYSRKEIRDIIAYLNVIANTADNISFERIVNEPKRGVGPGTLEKI 425

Query: 457 -CTQRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                 +  ++ E  +           +     +   I +L       S  +    +L  
Sbjct: 426 RNFANLQGMSLLEASENIMLSSIKGKAVQAVYELANMIIDLRSKLDHYSITEVVEAVLDR 485

Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS------SLQELISEL-EQYPPT 560
               +    +   E    I+ ++EFL+ T   +  +         L+ L   L +     
Sbjct: 486 SGYLEVLEIQKTLESQTRIENIEEFLSVTKNFDDTTDDVPENETGLERLSRFLNDLALIA 545

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                 +   EV +MT+H AKGLE P+VFL+     VF      +               
Sbjct: 546 DTDEAESESAEVTLMTLHAAKGLEFPIVFLIGLEEGVFPLSRSMEEESELEEERRL---- 601

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                          YVG+TRA   L I   ++ +   +++   
Sbjct: 602 ------------------------------AYVGITRAEQMLFITNANSRTLYGRTSYNR 631

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
               + +   +    + +      +          T   +   L +    +++  + K  
Sbjct: 632 ESRFIQEISEDLLVHQGLARPARASFKVSYQDSNETKFGQGMSLAQALQARKVASQPKKS 691

Query: 741 KKLFS 745
               S
Sbjct: 692 PFSNS 696


>gi|153800815|ref|ZP_01955401.1| DNA helicase II [Vibrio cholerae MZO-3]
 gi|229521109|ref|ZP_04410530.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80]
 gi|124123646|gb|EAY42389.1| DNA helicase II [Vibrio cholerae MZO-3]
 gi|229341994|gb|EEO06995.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80]
 gi|327483072|gb|AEA77479.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae LMA3894-4]
          Length = 723

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 117/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++   +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +  R             + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N         S     ++ I+ L         H      +      + +    G 
Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P+VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|253998105|ref|YP_003050168.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
 gi|253984784|gb|ACT49641.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
          Length = 720

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 95/576 (16%), Positives = 194/576 (33%), Gaps = 112/576 (19%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K+        ++         +  A     + +   Y+   ++  V+DF +L++   +LL
Sbjct: 144 KQVMGYINSCKEEGLRANAVDAYDAHSQRMREIFEEYDRQCQREGVVDFAELLLRCYELL 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +    A IR        +IL+DE QDT+ +Q+  ++ L            +   +FAVG
Sbjct: 204 SRD---ASIRQHYQSRFKYILVDEFQDTNRLQYLWLKLLAG----------ADNCVFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   ++    R        +I++L  ++RS  +IL   + + + 
Sbjct: 251 DDDQSIYAFRGARVGNMRDFEQDFNVR--------NIVKLEQNYRSHGNILDAANAIITH 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             N  G +                     LW        S    +       ++ + +  
Sbjct: 303 NRNRLGKN---------------------LW-------TSAGKGEPIRVYQAYNDIDE-- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   I ++    T          +  +I +L R    + ++           
Sbjct: 333 -----ANFIVDEIKSLHSEGT----------ELSEIALLYRSNAQSRVLEHAL----FSA 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            +           +   IK  +A  R I +  DD + + ++  P        + ++    
Sbjct: 374 GLPYRVYGGLRFFERAEIKHALAYLRLIANPNDDTALLRVINFPTRGIGARSLEQLQEAA 433

Query: 460 RHETETVYEYIQKFANCGIS--KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
           R E  ++++        G      +  +  I ++   A   +  +   +       R  +
Sbjct: 434 RAEDCSLWQAAINKVGNGRPGKGVEGFVALIRQMAEEATGLTLPEMAEIATTLSGLRTHY 493

Query: 518 ISRF-GNEVIDVLDEFLNFTLRNEQNSYS--SLQELISELEQYPPTIKRAHSANHNEVRI 574
            +   G + I  LDE ++  +    N+    +L + ++                 + +++
Sbjct: 494 QNEKEGEDRIANLDELISAAVTFVNNNEDAGTLTDFLTFASLEAGE--HQAEVGRDALQL 551

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MTVH AKGLE   VF+      +  H+                                 
Sbjct: 552 MTVHAAKGLEFRTVFISGLEEGLCPHEQSL------------------------------ 581

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                + +  EE  RL+YV +TRA  +L +    + 
Sbjct: 582 ----YETNGLEEERRLMYVAVTRARQRLYLSHAQSR 613


>gi|224282901|ref|ZP_03646223.1| UvrD/REP helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140060|ref|ZP_07802253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132570|gb|EFR50187.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB
           41171]
          Length = 885

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 114/735 (15%), Positives = 217/735 (29%), Gaps = 124/735 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +     +I      L          +  
Sbjct: 75  AAAEMRERLEGLIGPVAQRMWVSTFHSACVRILRRDGQSI-----GLASGFSIYDTADC- 128

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-- 124
             L            K    + I  +  D K  L   Q++  +    +   +        
Sbjct: 129 ERLVKLIGADLNIDLKRYTPRAILSRISDYKNSLIGWQEQLKRYAPDYRPGQRGYQIGNF 188

Query: 125 -ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   + A Y+        +DF+DLI  T +LL+ +     +      +  +IL+D
Sbjct: 189 GDIEVLYSVIYAEYQHRLAMANAVDFDDLIGRTVELLRTQP---QVADYYRHKFRYILVD 245

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGK-------NTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+E+IR L      G+          + P  +  VGD  QSIY+F GA+ + 
Sbjct: 246 EYQDTNHAQYELIRELAGVDAAGQVVPDAPSAGRAGPAWITVVGDSDQSIYAFRGADIRN 305

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++               I L  ++RST  IL   + V +  +  +           
Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIANNQGRKPKK-------- 349

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +                +  +       A   A  IA  I+ +
Sbjct: 350 -------------LWTAL-------GIGDPIVGYAADN-------AEQEAAWIAGEIARV 382

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +              D+ ++ R    +  +            +           +  
Sbjct: 383 RAEEGT---------PYSDMAIMYRANAQSRALEGAL----VHAGLPYQLVGGTRFYERR 429

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475
            +KD +A  + I++  D+++   +L  P           I         T ++ I     
Sbjct: 430 EVKDAIAYLQAIVNPADNVNMRRILNVPKRGLGPRAESIIVSYADAHATTFWDGIDHLDQ 489

Query: 476 ------CGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524
                     +       +  L   A      P +    +L      ++       +   
Sbjct: 490 IDGVPTRTGKQLAAFRDLMRSLSAFAAEHDGKPSEVVGEVLSQSGLLEELQRSEDPQDAS 549

Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582
            ++ L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKG
Sbjct: 550 RVENLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPSEGEDSGKVTLMTLHTAKG 609

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFL       F H                                          
Sbjct: 610 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDAD 635

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E  RL YVG+TRA  +L + + +  +   ++N+      + +        K+ +   
Sbjct: 636 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPDRLIDWKRRETGM 695

Query: 703 SINKDEWIAYEWSTH 717
              +  W    +   
Sbjct: 696 EGMRSGWSRRGFDDE 710


>gi|113477645|ref|YP_723706.1| ATP-dependent DNA helicase Rep [Trichodesmium erythraeum IMS101]
 gi|110168693|gb|ABG53233.1| ATP-dependent DNA helicase, Rep family [Trichodesmium erythraeum
           IMS101]
          Length = 781

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 112/604 (18%), Positives = 198/604 (32%), Gaps = 103/604 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEE 139
           K I+T+++N      + +    +      +++  +   ++         +   +   Y++
Sbjct: 159 KQIVTKQLNLDDKKFEPR--SVRYAISNAKNQGMSPLEYQRAEPDYRGRVIAEVYGIYQD 216

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
               N  LDF+DLI    +L ++ +    I     Q  NHIL+DE QDT+  Q+  IR L
Sbjct: 217 NLAANNALDFDDLIRIPVELFRQNE---QILAYWYQRFNHILVDEYQDTNRTQYNFIRFL 273

Query: 200 TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
             +    K   +   R++F VGD  QSIYSF  A+   +L  +        +   + ++I
Sbjct: 274 ATNGEDPKYIKNWENRSIFVVGDVDQSIYSFRMADYTILLDFQNDFGDGLADEYTQ-TMI 332

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RS  +IL V +K+          +   T  I                       
Sbjct: 333 KLEENYRSRENILAVANKLIENNTQRIDKTLKPTRGI----------------------- 369

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                 +   + +  +    E         I   I+ +         G           V
Sbjct: 370 ----GEEIYCYEAENELEEAE--------FICSKIAEITDQYPDLDLGS--------FAV 409

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    +  +          Y I  V        D   IKD +A  R I +  D +S +
Sbjct: 410 LYRTNSQSRSLEEKL----IHYDIKYVIIGGLRFYDRKEIKDALAYLRVIANPADTVSLL 465

Query: 439 CMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGISKFQHVIKYIHEL 491
            ++ +P     +  I  +     +    ++E I         A           + I  L
Sbjct: 466 RIINTPRRGIGKATIDSLLNASSQMGIPLWEIINDQASVNALAGRSSKAVNKFAEVIQHL 525

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQ 548
               +  +  +    IL      +    +   +       L E  +   + ++++  +  
Sbjct: 526 QDELENLTALEIVERILENSGYIENLKKQDTEDADNRLANLGELCSAVAQFQEDNEDT-- 583

Query: 549 ELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            L S L                  V +MT+H+AKGLE PVVF+V     +  H       
Sbjct: 584 TLGSFLANASLASNLDNLQDGQEAVSLMTLHSAKGLEFPVVFIVGLEQGLLPHFRSINDP 643

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           +                                    EE  RL YVG+TRA +QL     
Sbjct: 644 LS----------------------------------LEEERRLCYVGITRAEEQLFFSYA 669

Query: 668 SNTS 671
           +   
Sbjct: 670 TERR 673


>gi|259507108|ref|ZP_05750008.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314]
 gi|259165386|gb|EEW49940.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314]
          Length = 824

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 107/705 (15%), Positives = 211/705 (29%), Gaps = 152/705 (21%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K    + ++    +LK +L    +         N ++         T+   +   Y++  
Sbjct: 173 KKFSARTLSSAISNLKNELISPSEALADAERTHNPFE---------TVVARVYVEYQQRL 223

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           ++   +DF+DLI     +  +      +     +   H+LIDE QDT+  Q+++I  L  
Sbjct: 224 RRANAVDFDDLIGEVVRIFTEHP---QVAEHYRRRFRHVLIDEYQDTNHAQYQLIAILVG 280

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                      P  L  VGD  QSIY+F GA  + +   +R               I L 
Sbjct: 281 RP------DQDPSELCVVGDSDQSIYAFRGATIRNIEEFERDF--------TDARTILLE 326

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL+  + V S  EN +  +                     LW  +       
Sbjct: 327 QNYRSTQTILSAANAVISQNENRRPKN---------------------LWTAL------G 359

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              +   + +  +           AR IA  I  +              +   D+ ++ R
Sbjct: 360 EGEKIIGYVADNEHDE--------ARFIASEIDELADRG----------LSYSDMAIMYR 401

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +  +         +           +   I+D++A  R + + +D ++   ++
Sbjct: 402 TNNSSRALEEVF----IRTGVPYKVVGGTKFYERKEIRDVIAYLRVLENPDDTVNLRRII 457

Query: 442 KSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGIS-----------KFQHVIKYIH 489
            +P     +     +     +   +  + +   A   +            KF  ++  + 
Sbjct: 458 NTPKRGIGDRAQAFVALHAENNRISFGQALVDAAAGNVELLGGRGRNAVGKFNELMDTLR 517

Query: 490 -ELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
            EL+ +    +         + IL     + +  +    +    +D L+E ++       
Sbjct: 518 GELLSMVNEVTGMPDIGQVISRILDITGYKAELEASNDPQDGARLDNLNELVSVAREFSS 577

Query: 542 N----------------------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           +                      +  SLQ  +  +       +         V +MT+HT
Sbjct: 578 DAANRMAYDTMDGSEPELDDSEPAPGSLQAFLERVSLVADADQI-PDNEQGLVTLMTLHT 636

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFL       F H                                  L    
Sbjct: 637 AKGLEFPVVFLTGWEDGQFPH----------------------------------LRSLG 662

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                 E  RL YVG+TRA  +L + +    S+            + +        ++ +
Sbjct: 663 DAKELAEERRLAYVGITRARQRLYVTRAMLRSSWGNPVTNPASRFLQEVPEGLIDWRREE 722

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
             NS       +         +     +             K+  
Sbjct: 723 PANSFGSAWAPSGSPYGGGHPSGGYGSQTRRSAPSRPSIPTKQSR 767


>gi|312887473|ref|ZP_07747072.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
 gi|311300113|gb|EFQ77183.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
          Length = 758

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 99/630 (15%), Positives = 196/630 (31%), Gaps = 115/630 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +  +Y     +   +DF+DL+  TN+LLK  +    + YK   +  ++++DE QDT+
Sbjct: 173 LGKIYENYVNRCFRAGAMDFDDLLYKTNELLKTHND---VLYKYQNKFKYLMVDEYQDTN 229

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +++ L           S  + +  VGD+ QSIY+F GA  + +L  ++       
Sbjct: 230 FSQYLIVKKLA----------SINQNICVVGDDAQSIYAFRGANIQNILNFEKDYP---- 275

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  + +L  ++RST +I+ V + + S  +     +  S                  
Sbjct: 276 ----DLKVFKLEQNYRSTQNIVNVANSIISNNKEQLKKNVFS------------------ 313

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                    + +   + +   ++ D         + A  I               +   +
Sbjct: 314 ---------EKEAGDKIKVMRAFSD----NEEGKMTAEAIFQ-------------DHANK 347

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            ++  D  +L R    +  +    R L     I               IKDL++  R   
Sbjct: 348 GMKWNDFAILYRTNAQSRSMEEGLRKL----NIPYKIYGGLSFYQRKEIKDLISYFRLTF 403

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGISKFQHVIK-- 486
           +  D+ +   ++  P     +  + +I     +   + +E I        S+  + +   
Sbjct: 404 NPNDEEALKRVINYPKRGIGDTTVDRIIVSAGQNNISPWEAIVNPTQFLDSRTANTVANF 463

Query: 487 --YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
              I     I +  S +D    I       +        E     + + E LN       
Sbjct: 464 GMMIQSFQVITKTMSAYDSALYIAQHSGLLKDLYEDKSVEGLNRYENIQELLNGIKEFSE 523

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E      L   + ++       K  +      V +MT+H++KGLE P VF+V     +F
Sbjct: 524 REDLEEKGLDIFMQDVALLTNDDKDKNKDAD-TVSLMTIHSSKGLEFPQVFVVGLEENLF 582

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                       ++  EE  RL YV +TRA
Sbjct: 583 PSQMSLNS----------------------------------RTDLEEERRLFYVAVTRA 608

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             +L I   ++               + +       +             +     +   
Sbjct: 609 ESKLTISYATSRFKFGTLINCEPSRFLDEIDAQYLELDFTAKKAPAGNPFFEDERSAWAT 668

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIK 748
            +     +  T    +    I  K   P  
Sbjct: 669 KDTFSKPKAATPATNIKTTSILAKAHVPTP 698


>gi|284029231|ref|YP_003379162.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836]
 gi|283808524|gb|ADB30363.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836]
          Length = 773

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 124/712 (17%), Positives = 224/712 (31%), Gaps = 124/712 (17%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL------LS 70
            +D  P     ++  NK  +   E     +  +A+ +  ++                 +S
Sbjct: 70  ARDAHPGSILAITFTNKAAAEMRERVVELVGPRAKLMWVSTFHSSCVRILRRDIKRFGIS 129

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           S F     T  + ++T    +   D+     +  L     +  ++ D        K++  
Sbjct: 130 STFSIYDDTDSRRLMTLVCRELDLDVKRYNPRAVLNWISTQKNELIDHETAA--SKTSNH 187

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                      Y+E   +   LDF+DL++ T +LL+       +R    +   H+L+DE 
Sbjct: 188 LEETYAECYRIYQERLAQANALDFDDLLMTTVNLLQ---AFPEVREYYRRRFRHVLVDEY 244

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           QDT+  Q+ +IR L  +   G +     P  L  VGD  QSIY+F GA  + +L  ++  
Sbjct: 245 QDTNHAQYTLIRELCGEDEPGGSGPVVPPAELMVVGDSDQSIYAFRGATIRNILAFEQDF 304

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  IL+  + V S  E     +  S             
Sbjct: 305 --------AGAETILLEQNYRSTQTILSAANAVISRNEGRMAKNLWS------------- 343

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                           Q   +Q +     +   +       A+ +A  I  +   D    
Sbjct: 344 ---------------DQGQGEQIAVYVADNEHDE-------AQFVADEIDRLTDAD---- 377

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 ++  D+ V  R    + +   +                     +   ++D +A 
Sbjct: 378 -----GVKPSDVAVFYRTNAQSRVFEEVF----IRTGHPYKVVGGVRFYERKEVRDALAY 428

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------ 478
            R +++ ED +S   ++  P     +     I          +    + A          
Sbjct: 429 LRVLVNPEDTVSLRRIMNVPKRGIGDRAEAAIEALAARDRISFAQAMRRAQDAPAMASRS 488

Query: 479 -SKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
            +  Q  +  + EL  +      P D   + L      ++       +    ++ LDEF+
Sbjct: 489 VNAVQSFVDILDELTAMVDSGAPPDDILDVALHRSGYYEELQKSPDPQDETRLENLDEFI 548

Query: 534 NFTLRN-----EQNSYSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           +               S LQ  +  +              +   V +MT+HTAKGLE PV
Sbjct: 549 SVAREFVEERTAAGEPSDLQAFLERVALVADADQIPDAVDDGGVVTLMTLHTAKGLEFPV 608

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFL      VF H                                            EE 
Sbjct: 609 VFLTGMEDGVFPHSRSLT----------------------------------DMKELEEE 634

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            RL YVG+TRA  +L I + +  S             + +        ++ +
Sbjct: 635 RRLAYVGITRARQRLAISRAAVRSAYGAPQHNPPSRFLEEIPAELLDWRRDE 686


>gi|117927584|ref|YP_872135.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B]
 gi|117648047|gb|ABK52149.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B]
          Length = 763

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 113/628 (17%), Positives = 202/628 (32%), Gaps = 116/628 (18%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            +++         +   Y++  ++    DF+DLI++T  +L+       I  +  +   H
Sbjct: 175 RRASTHMEKAIAAVYRQYQQRLRQAGAFDFDDLIMSTVSMLQ---AFPEIAAQYRRRFRH 231

Query: 180 ILIDEVQDTSLIQWEVIRSLTED-----------FFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +L+DE QDT+  Q+ ++R L                  +    +P  L  VGD  QSIY+
Sbjct: 232 VLVDEYQDTNHAQYVLLRELVGPTVPRYAVDGEPLQPDRAGDGAPPELMVVGDADQSIYA 291

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F GA  + ++  +R             ++I L  ++RST  IL   + V     + +   
Sbjct: 292 FRGATIRNIIEFERDFP--------DATVITLEQNYRSTQTILRAANAVIEKNADRRPKK 343

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW           +          D   +       A  
Sbjct: 344 ---------------------LW-------TDAGDGVPIVGFVADDEHGE-------AAF 368

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I  ++                KDI V  R    + +             +      
Sbjct: 369 VAEEIDRLVDEG---------AATFKDIAVFYRTNAQSRVFEEAF----LRVGLPYKVVG 415

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                +   ++D++A  R + + ED LS   +L  P     E     I      E  +  
Sbjct: 416 GVRFYERREVRDILAYLRVLANPEDVLSLRRILNVPRRGIGERAEACIDALAVRERVSFA 475

Query: 468 EYIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           E ++++      A    S  QH +  + EL  +A+   P D    ++       +  +  
Sbjct: 476 EALRRYDEAPGLAPRSASAVQHFLSLLDELRAVAESAPPGDVVEAVIERTGYLAELAASG 535

Query: 522 GNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNE-VRIMT 576
             +     + + E +      E+N+    L + + ++       +    A+ +  V +MT
Sbjct: 536 DPQDESRSENVRELVTVAREFEENNPGGRLTDFLEQVSLVSDADEIPDDADGDGVVTLMT 595

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +HTAKGLE PVVFL      VF H+                                   
Sbjct: 596 LHTAKGLEFPVVFLTGLEEGVFPHQRSFDDP----------------------------- 626

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                    E  RL YVG+TRA  +L + +    +             V D        +
Sbjct: 627 -----KQMAEERRLAYVGITRARQRLYLTRAVTRALWGAPQVFPPSQFVADIPEALVDWR 681

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPL 724
           +     S +     A   S   P   P+
Sbjct: 682 RADFGASASSSAVRASAASAARPTTAPV 709


>gi|153825962|ref|ZP_01978629.1| DNA helicase II [Vibrio cholerae MZO-2]
 gi|149740370|gb|EDM54506.1| DNA helicase II [Vibrio cholerae MZO-2]
          Length = 723

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 117/690 (16%), Positives = 220/690 (31%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++   +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +  R             + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N         S     ++ I+ L         H      +      + +    G 
Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPQVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|229524854|ref|ZP_04414259.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis
           VL426]
 gi|229338435|gb|EEO03452.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis
           VL426]
          Length = 723

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 117/690 (16%), Positives = 221/690 (32%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++   +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +  R             + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARVENIEKFTREFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLINNRHDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N         S     ++ I+ L         H      +      + +    G 
Sbjct: 441 SVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P+VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|270157203|ref|ZP_06185860.1| DNA helicase II [Legionella longbeachae D-4968]
 gi|289164396|ref|YP_003454534.1| DNA helicase II [Legionella longbeachae NSW150]
 gi|269989228|gb|EEZ95482.1| DNA helicase II [Legionella longbeachae D-4968]
 gi|288857569|emb|CBJ11407.1| DNA helicase II [Legionella longbeachae NSW150]
          Length = 721

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 111/579 (19%), Positives = 193/579 (33%), Gaps = 117/579 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE+A +   V+DF +L++ T++LL+       I +   Q    IL+DE QDT+ IQ
Sbjct: 173 IYRAYEQACQTAGVIDFAELLLRTHELLRDNPE---ILHHYRQRFQAILVDEFQDTNTIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L  +             + AVGD+ QSIY + GA+ + + +  R  +       
Sbjct: 230 YAWIRLLAGEHTA----------VLAVGDDDQSIYGWRGAKVENIQQFARDFKNTL---- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RSTA IL   + + +   +  G                       LW 
Sbjct: 276 ----TIRLEQNYRSTATILDAANALITNNHSRMGK---------------------DLW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       ++    S F+ L +       AR +   I   I               
Sbjct: 310 ------TDGATGEKILVYSAFNELDE-------ARFVCERIMMEINQG----------AS 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           A DI +L R    + ++           +I+          D   +KD +A  R +++  
Sbjct: 347 ADDIAILYRSNAQSRVLEEAL----LRARIAYRIYGGLRFFDRAEVKDALAYLRLLVNPN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF------ANCGISKFQHVI 485
           DD +F  ++  P     E  +  +    + E  +++   +        A    S     I
Sbjct: 403 DDTAFERVVNFPTRGIGEKTLDDLRYYAKSEQCSLWHAAKILLESGGMAQRAGSALAKFI 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFISRFGNEVIDVLDEFLNFTLRN--E 540
           + I +L          +  + ++          +         +D L E +N   +   +
Sbjct: 463 ELIEQLQQNTVEMELDEQLSTVVQLSGLYAHFSKIKGDKSESRLDNLQELINAAKQFRYD 522

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q     +  + + L        +     +   V +MT+H AKGLE P+VFLV     VF 
Sbjct: 523 QEEDEVIPLVNAFLAHASLEAGEMQADEHERYVHLMTIHAAKGLEFPMVFLVGMEEGVFP 582

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            K   +                                       EE  RL YVGMTRA 
Sbjct: 583 GKQSLEEPG----------------------------------RLEEERRLCYVGMTRAM 608

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
            +LI+          +         + +         ++
Sbjct: 609 RKLILSYAEIRRQYGREEYHRPSRFLRELPQEFLDEIRV 647


>gi|332042510|gb|EGI78712.1| UvrD/REP helicase [Lacinutrix algicola 5H-3-7-4]
          Length = 779

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 108/625 (17%), Positives = 206/625 (32%), Gaps = 119/625 (19%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAH 136
            +  K +  ++   K+  +  ++   ++  I ++  F   ++ ++   +       + A 
Sbjct: 122 GSIIKEMGLEKDVYKTKQVYSRISSYKNSLITVKAYFKNPELMEADAMARRPKMGEIYAE 181

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y     K   +DF+DL++ TN+LL +      +  K   +  +IL+DE QDT+  Q+ ++
Sbjct: 182 YVNRCFKAGAMDFDDLLLRTNELLTRFPA---VLAKYQDKFRYILVDEYQDTNHSQYLIV 238

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           R+L + F          + +  VGD+ QSIY+F GA    +L  ++              
Sbjct: 239 RALADRF----------QNICVVGDDAQSIYAFRGANINNILNFQKDYDN--------VK 280

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           +  L  ++RST +I+   + V    +        +                V++   +  
Sbjct: 281 LYRLEQNYRSTKNIVGAANSVIDHNQTKLDKVVWTAN---------DDGPKVKVNRSLTD 331

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
             +                           R +A TI         +       +Q  D 
Sbjct: 332 GDEG--------------------------RFVASTI---------WEEKMNNQLQNSDF 356

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VL R    +  I    R       I               IKD+ A  R +L+  D+ +
Sbjct: 357 AVLYRTNAQSRAIEDALR----KRDIPYRIYGGLSFYQRKEIKDVTAYLRLVLNTSDEEA 412

Query: 437 FVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-------ISKFQHVIKYI 488
              ++  P     +  I ++        +T++E +++  +          +K +  +  I
Sbjct: 413 LKRVINYPARGIGQTTIDRLIVAANATGKTIFEVLKEIDSIKININGGTRNKLKDFVTLI 472

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSY- 544
                + Q  +  D    I  +    ++F      E    ++ ++E LN      +    
Sbjct: 473 ESYQVMNQTANAFDLAEHITKSSGLIREFNKDGTPEGVLRLENVEELLNGIKDFVEGQIE 532

Query: 545 --SSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              S   L   LE             + N V +MT+H AKGLE   VF+V     +F   
Sbjct: 533 VADSTGNLAEFLEDVALATDLDGDKGDPNHVALMTIHLAKGLEFNHVFIVGLEEDLFPS- 591

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             +    +S  EE  RL YV +TRA  Q
Sbjct: 592 ---------------------------------AMSMNTRSELEEERRLFYVALTRAEKQ 618

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVY 686
             +    +     K         + 
Sbjct: 619 AYLTYALSRYRWGKLIDSEPSRFIE 643


>gi|319938934|ref|ZP_08013298.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus 1_2_62CV]
 gi|319811984|gb|EFW08250.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus 1_2_62CV]
          Length = 760

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 89/492 (18%), Positives = 166/492 (33%), Gaps = 88/492 (17%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  K      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYEMYQKELRQSEAMDFDDLIMLTLRLFDKNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   + V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANDVIKNNHNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +   +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNADGEDIVYYRANDEQDE-------ALFVAKTIDEL---------SS 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 +D  VL R    +  I            I               I+D+++    
Sbjct: 341 TSDYVYRDFAVLYRTNAQSRNIEEAL----LKVNIPYTMVGGTKFYSRKEIRDVISYLNL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++SF  ++  P        + KI      +  ++ +   +              
Sbjct: 397 IANTSDNISFERVVNEPKRGVGPGTVEKIRNFAASQEMSLLDASSQIMLSPVKGKAAQAV 456

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I  L       +  +   L+L      +Q  ++   E    I+ ++EFL+ T  
Sbjct: 457 FDFANLILNLRERLDELTVTELVELLLEKTGYTEQLAAQATLESQARIENIEEFLSVTKN 516

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+     L   +++L     T      ++   V +MT+H AKGLE PVVF+
Sbjct: 517 FDENPENDTEETGLDRLSRFLNDLALIADTDDGDQESSE--VTLMTLHAAKGLEFPVVFI 574

Query: 591 VDTGSQVFSHKH 602
           +     VF    
Sbjct: 575 IGMEENVFPLSR 586


>gi|302544595|ref|ZP_07296937.1| ATP-dependent DNA helicase PcrA [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462213|gb|EFL25306.1| ATP-dependent DNA helicase PcrA [Streptomyces himastatinicus ATCC
           53653]
          Length = 823

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 116/714 (16%), Positives = 222/714 (31%), Gaps = 133/714 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 130 AAGEMKERVEELVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 184

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P+K    +  + K  +LK +L        +          F+ T   
Sbjct: 185 RLMALVCRDLDLDPKK-FPPKSFSAKISNLKNEL------IDEETFAGQAADGFEKT--- 234

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+D+I+ T +LL+       +     +   H+++DE Q
Sbjct: 235 ---LAEAYAMYQSRLREANALDFDDIIMTTVNLLQ---AFPDVAEHYRRRFRHVMVDEYQ 288

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L                L  VGD  QSIY+F GA  + +L+ +     
Sbjct: 289 DTNHAQYTLVRELVGTDTDEVAAGE----LCVVGDADQSIYAFRGATIRNILQFEEDYP- 343

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I L  ++RST  IL+  + V    EN +  +                  
Sbjct: 344 -------DARTILLEQNYRSTQTILSAANAVIERNENRRPKN------------------ 378

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW       ++        + +  +           A+ +A  I  +          
Sbjct: 379 ---LW------TEAGTGATITGYVADTEHDE--------AQFVADEIDRLTDAG------ 415

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +A D+ V  R    + +   +         +           +   ++D++A  R
Sbjct: 416 ---DARAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 468

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--- 482
            + + ED +    ++  P     +     I      E  T  + +++         +   
Sbjct: 469 VLANPEDAVPLRRIMNVPKRGIGDRAEAMIDALASREKITFPQALRRVDEAYGMAARSAN 528

Query: 483 ---HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                   + EL  I +  + P      +L       +  +    +    I+ L E  + 
Sbjct: 529 AVKRFNTLMEELRTIVESGAGPATVLEAVLERTGYLAELQASTDPQDETRIENLQELASV 588

Query: 536 TLRNEQ----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            L  EQ     +  +L E + +  L      I          + +MT+HTAKGLE PVVF
Sbjct: 589 ALEFEQDRGEENPGTLAEFLEQVALVADSDQIPDEDEEGTGVITLMTLHTAKGLEFPVVF 648

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L      VF H                                       +    EE  R
Sbjct: 649 LSGMEDGVFPHMRALG----------------------------------QTKELEEERR 674

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           L YVG+TRA ++L + + +  S     +       + +      + ++      
Sbjct: 675 LAYVGITRARERLYLSRSTMRSAWGTPSYNPPSRFLEEIPDQYVQWRRTGPATP 728


>gi|327469639|gb|EGF15108.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK330]
          Length = 762

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 97/589 (16%), Positives = 187/589 (31%), Gaps = 119/589 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKANIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI     ++  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRNFAFNQEISLLDASTNILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       +  +    +L          ++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMILDLRERLDDFTVTELVEAVLEKTGYATVLAAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            ++     +  S L +L   L +              +EV +MT+H AKGLE PVVFLV 
Sbjct: 516 FDESPDNPSDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF      +                                              Y
Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           VG+TRA   L +   ++     K+N       + +   +    + +   
Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLDYQGLARP 650


>gi|227530244|ref|ZP_03960293.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC
           49540]
 gi|227349833|gb|EEJ40124.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC
           49540]
          Length = 761

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 111/768 (14%), Positives = 218/768 (28%), Gaps = 142/768 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   N             + ++   L   S        
Sbjct: 34  GAGSGKTRVLTHRIAYLIEEKGVLPWNILAITFTNKAAREMQERVGKLLGESARDIWVST 93

Query: 66  FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-------------EFIKI 110
           F  L    L +           T     +   L +++    +                  
Sbjct: 94  FHALCVRILRRDIEKLGYNRAFTIADTSEQRTLMKRICAELNIDTKKFDPRSILSAISNA 153

Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T   +  ++      +       Y+   + N  LDF+DLI+ T +L +K      
Sbjct: 154 KNALQTPDDYSKEANSMFENMVARAYKLYQRELEANQSLDFDDLIMKTIELFEKD---QE 210

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q++++  L + +          + L  VGD  QSIY 
Sbjct: 211 TLEFYQDKFHYIHVDEYQDTNDAQYKLVNMLAQGY----------KNLCVVGDADQSIYG 260

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA    +L  +    +           + L  ++RST  IL   ++V       +   
Sbjct: 261 WRGANMNNILNFEHDYPQ--------AHTVMLEQNYRSTQTILDAANEVIDNNVYRKKKK 312

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              Q S+    +   +       A+ 
Sbjct: 313 ---------------------LW-------TENGKGDQISYYRAQNEHDE-------AQF 337

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I             +K   +  D  +L R    + +I            +      
Sbjct: 338 IVSKIKE---------EREKNNYKYNDFAILYRTNAQSRMIEETF----LKSSVPYTMVG 384

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   I+D++A    I++ +D +SF  ++ +P        +  +         ++ 
Sbjct: 385 GHKFYDRKEIRDILAYLTLIVNPQDSMSFERVVNTPKRGIGMTSVDHLREFANDNNWSLL 444

Query: 468 EY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           E           +     K     + +  L   A+F +  D    IL      +      
Sbjct: 445 EAAENVDIANNISTRTRVKIDEFGQLMRNLTKQAEFLNLTDLTEEILDKSGYNKALEQDK 504

Query: 522 GNE---VIDVLDEFLNFTLRNEQNSYSS-------LQELISELEQYPPTIKRAHSANHNE 571
             E     + LDEF + T   ++            +   +++L                 
Sbjct: 505 SLESQARRENLDEFKSVTQEYDEQHKDEDDNNIQKITNFLADLALVSDQD--DVDEQAPA 562

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFLV     +F                                 
Sbjct: 563 VTLMTLHAAKGLEFPVVFLVGMEEGIFPLSRAILEDDELEEERRL--------------- 607

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDS 688
                               YVG+TRA  +L +            +++    + + +   
Sbjct: 608 -------------------AYVGITRAKKKLYLTNAFSRLLYGRIQRNQPSRFVEEINPD 648

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
               E  +  +               +T + E     +  +  + +  
Sbjct: 649 LLKFENDQPAERLGGQKLPFGGEAATATTYREQKQRRQYRSAGKRVKP 696


>gi|282877935|ref|ZP_06286744.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC
           35310]
 gi|281299936|gb|EFA92296.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC
           35310]
          Length = 810

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 112/647 (17%), Positives = 198/647 (30%), Gaps = 122/647 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y +  +K   +DF+DL++ T  LLK+ +    IR K  +   ++L+DE QDT+  Q
Sbjct: 178 VYEAYVQRCRKANAMDFDDLLVLTYQLLKEHED---IRQKYCERFQYVLVDEYQDTNYAQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++  LT++           R +  VGD+ QSIY F GA    +L  ++I +       
Sbjct: 235 QCIVWLLTKE----------HRHICVVGDDAQSIYGFRGANIDNILDFQQIYE------- 277

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               + +L  ++RST  I+   + +    E            I          G   +++
Sbjct: 278 -GSRLFKLQQNYRSTQRIVQAANSLIKHNE----------RQIPKDVFSENDEGEKIIFK 326

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            V S  +                          A  +   I  +   D            
Sbjct: 327 PVYSDKE-------------------------EAFVVCKDIKRIARQD---------NAP 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    +       R       I               IKD++A  R +++ +
Sbjct: 353 YSDFAILYRTNAQSRSFEEEMR----KQNIPYRIYGGLSFYQRKEIKDIIAYFRLVVNPD 408

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK-------FANCGISKFQHV 484
           D+ +F  ++  P        I KI  + R    + ++ I              + K    
Sbjct: 409 DEEAFKRIINYPTRGIGNVTIQKIADSARSHAVSFWQVISNPVQYLQGVNQGTLGKINRF 468

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
            + I   I  A     +     I+          S    E     + ++E L       +
Sbjct: 469 KELIEGYILKASNTDVYQLGNEIMKTSGFIADIYSNSDPEGLARQENVEELLAGMQDFCE 528

Query: 542 N----SYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +       +   L   L++              + V +MTVH AKGLE P VF+V     
Sbjct: 529 SKKEEGRENEIYLTDYLQEVALLTDLDSDDGEGSRVSLMTVHAAKGLEFPTVFIVGLEEN 588

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F                                     +        EE  RLLYV +T
Sbjct: 589 IFPSP----------------------------------LSMGSMREMEEERRLLYVAIT 614

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH---NDERVKKIKLTNSINKDEWIAYE 713
           RA    I+    N     K    T    + D      + E   +++ ++      +    
Sbjct: 615 RAEKHCIMTSAKNRWRFGKMEFDTPSRFIKDIDSRFIHIESEFEVEASDDSFHTPYSGSS 674

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
           +S           + +       Q   K   +  +         + S
Sbjct: 675 FSGDVYRRYSDRMQNSRPVASQFQADVKPKITAPQRPEQAVDPFSTS 721


>gi|309777085|ref|ZP_07672051.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915155|gb|EFP60929.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 715

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/641 (15%), Positives = 202/641 (31%), Gaps = 121/641 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   YE+  K+   LDF+DL+I    +LK  +    IR K  +  N++ +DE QD
Sbjct: 167 QIKADVYEFYEKRLKEMYALDFDDLLIFAYRILKNNEE---IRAKWQRRFNYLHVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
              +Q+ +I+ L ++             L  VGD  Q+IY++ GA+   ++  ++     
Sbjct: 224 VDNLQYAIIKLLVKE----------GSYLCVVGDPDQTIYTWRGAQVDIIMNFEKDFP-- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RST  IL   + +     N                        
Sbjct: 272 ------DSHTVVLNENYRSTQQILNGANALIKNNRNRIDKDLF----------------- 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                        + + +   +++  D+             +A  I  +           
Sbjct: 309 ----------TRVESDDKIIHFSAMDDANEPV--------WVASKIMTLH---------- 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  +DI +L R    +  +         D+ I           D   IKD ++  R 
Sbjct: 341 HDHVNYRDIAILYRSNFLSRGLEKAL----LDFHIPYRIYGGIRFYDRAEIKDALSYLRL 396

Query: 428 ILSQED---------DLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG 477
           +    D         +L+   ++ SP        +  I    +H+   +Y+ + ++    
Sbjct: 397 LA-PFDEQDHKALYKNLAVKRVINSPKRGIGAKTLETIELQAQHDDTNMYDILCEYEIGK 455

Query: 478 ISK---FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                  Q  +  I E   +    S       +L               E ++ + E + 
Sbjct: 456 GKAKANIQAFVAMIEECRALVDTISIDQLLEKVLEDSGYLDMLREDKEIERLENIKELIG 515

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                 +        L   L++      +    N + V++MT+H AKGLE   VF+    
Sbjct: 516 DISDYVEEHPEG--TLNEYLQEISLYSDKEEQENGDFVQLMTIHAAKGLEFDNVFVFSLC 573

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F ++        P                                  EE  RL YV 
Sbjct: 574 EGIFPNERSVGEGGQP--------------------------------ALEEERRLAYVA 601

Query: 655 MTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            TRA  QL +     +S   ++ K+  R   ++  D   +     +   ++ I+      
Sbjct: 602 FTRARKQLFLSDSYGYSYVLDKIKTTSRFIKELPEDCIEDVGAKPRNTFSSDIDTYSGSD 661

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           +     +       +E +      ++K+     S   +D  
Sbjct: 662 FLSMHSNDIVQHRPQETSGYAQQAQRKLSDIRISDSFDDAP 702


>gi|307691765|ref|ZP_07634002.1| ATP-dependent DNA helicase PcrA [Ruminococcaceae bacterium D16]
          Length = 821

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 123/795 (15%), Positives = 236/795 (29%), Gaps = 148/795 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L P      +       + +   +   L  A +         +     
Sbjct: 122 AAGELKDRLSAMLGPEAEDVWASTFHSACVRILRRDIERLGFASSFTIYDTDDSLRVIKD 181

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L    L  K  P ++            +   + +++D+ + + + +             
Sbjct: 182 CLKELELDDKQFPPRS------------VLGYISRAKDQML-LAEDYAAQSEKSGDYRLN 228

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +AK +   Y+    +   LDF+D+I++T  LL++ +    +R    ++  ++LIDE QD
Sbjct: 229 KIAK-VYTRYQHRLWEANALDFDDIILHTVRLLQQFEE---VRAYYQRKFRYVLIDEYQD 284

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+ +  +L   +               VGD+ QSIY F GA  + +L  ++   + 
Sbjct: 285 TNNLQYLLASTLAGGYE----------NFCVVGDDDQSIYRFRGATIENILSFEKQYPR- 333

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL   + V    +  +G                     
Sbjct: 334 -------CRTIRLEENYRSTKHILEASNAVIRNNQGRKGK-------------------- 366

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +LW             ++    +  +   +       A+ +A  I +  G         
Sbjct: 367 -ELW-------TKAGEGEKLQVYTAMNENDE-------AQYVANQILDDFGQGRA----- 406

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +    +       I           D   +KD+ A    
Sbjct: 407 -----WKDHAVLYRMNAQSNQLETAFK----RSGIPYRIIGGTRFFDRAEVKDMTAYLAV 457

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KF 481
           + + EDDL    ++ +P        I                +   A           K 
Sbjct: 458 LNNPEDDLRLQRIINNPPRGIGAKTIETAQAIAQREGASLYAVIDNARMYPELERSAAKL 517

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + EL  +        F+  ++          ++   E    ++ + E L     
Sbjct: 518 AAFTNLMGELTGLLTTLPLDQFYEEMMIRTGYAAMLETKNTVEDRTRLENIRELLTSIRG 577

Query: 539 NEQN--SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             +N     +L   + E+  Y          + + V +MT+H+AKGLE PVVF+V     
Sbjct: 578 YMENAGDEPTLAGFLDEIALYTDLDSHDP--DQDCVVMMTMHSAKGLEFPVVFVVGAEEG 635

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F    I                                         EE  RL YV MT
Sbjct: 636 IFPSSRIMGEP----------------------------------DEMEEERRLCYVAMT 661

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA ++L +          +++       + +              +    D W      T
Sbjct: 662 RAKEKLYLTCAGQRMLFGRTSANRPSRFLEEIPPEHLERSGRNFLDR--GDSWGGMPSRT 719

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                       +      + +       P             S     G +      +D
Sbjct: 720 ------------SGYGGYAKPERSPYDQRPEPRAPQRRDYGGFSRA--MGTSAAPKGSAD 765

Query: 777 NQTFNRGLII-HKLL 790
              F++G ++ HK  
Sbjct: 766 LSAFHKGDMVRHKAF 780


>gi|315156747|gb|EFU00764.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0043]
          Length = 791

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 70  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189

Query: 111 RDRFNTY-KMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 190 KNELQTLEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEES 598

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633


>gi|310287344|ref|YP_003938602.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17]
 gi|309251280|gb|ADO53028.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17]
          Length = 885

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 113/735 (15%), Positives = 218/735 (29%), Gaps = 124/735 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +     +I      L          +  
Sbjct: 75  AAAEMRERLEGLIGPVAQRMWVSTFHSACVRILRRDGQSI-----GLASGFSIYDTADC- 128

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-- 124
             L            K    + I  +  D K  L   Q++  +    +   +        
Sbjct: 129 ERLVKLIGADLNIDLKRYTPRAILSRISDYKNSLIGWQEQLKRYAPDYRPGQRGYQIGNF 188

Query: 125 -ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   + A Y+        +DF+DLI  T +LL+ +     +      +  +IL+D
Sbjct: 189 GDIEVLYSVIYAEYQHRLAMANAVDFDDLIGRTVELLRTQP---QVADYYRHKFRYILVD 245

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGK-------NTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+E+IR L      G+          + P  +  VGD  QSIY+F GA+ + 
Sbjct: 246 EYQDTNHAQYELIRELAGVDAAGQVVPDAPSAGRAGPAWITVVGDSDQSIYAFRGADIRN 305

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++               I L  ++RST  IL   + V +  +  +           
Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVIANNQGRKPKK-------- 349

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +                +  +       A   A  IA  I+ +
Sbjct: 350 -------------LWTAL-------GIGDPIVGYAADN-------AEQEAAWIAGEIARV 382

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +              D+ ++ R    +  +            +           +  
Sbjct: 383 RAEEGT---------PYSDMAIMYRANAQSRALEGAL----VHAGLPYQLVGGTRFYERR 429

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            +KD +A  + I++  D+++   +L  P           I +      T +    +  + 
Sbjct: 430 EVKDAIAYLQAIVNPADNVNMRRILNVPKRGLGPRAESIIVSYADAHATTFWDGIEHLDQ 489

Query: 477 GI-------SKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524
                     +       +  L   A      P +    +L      ++       +   
Sbjct: 490 IDGVPTRTGKQLAAFRDLMRSLSAFAAEHDGKPSEVVGEVLSQSGLLEELQRSEDPQDAS 549

Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582
            ++ L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKG
Sbjct: 550 RVENLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPSEGEDSGKVTLMTLHTAKG 609

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFL       F H                                          
Sbjct: 610 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDAD 635

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E  RL YVG+TRA  +L + + +  +   ++N+      + +        K+ +   
Sbjct: 636 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPDRLIDWKRRETGM 695

Query: 703 SINKDEWIAYEWSTH 717
              +  W    +   
Sbjct: 696 EGMRSGWSRRGFDDE 710


>gi|239814543|ref|YP_002943453.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239801120|gb|ACS18187.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 809

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 208/694 (29%), Gaps = 138/694 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YEE  ++  V+DF +L++ + +LL+  D    +R    +   HILIDE QDT+ +
Sbjct: 188 ELYQLYEEQCQREGVVDFGELMLRSYELLRDND---PVREHYQRRFRHILIDEFQDTNRL 244

Query: 192 QWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           Q+  I+ L+     G         ++ AVGD+ QSIY+F GA    +    R    R   
Sbjct: 245 QYAWIKMLSGSTAAGGQFVPGENNSVIAVGDDDQSIYAFRGARVGNMADFVREFDVR--- 301

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I+L  ++RS ++IL   +++ S  +   G +                      
Sbjct: 302 -----HQIKLEQNYRSYSNILDSANELISHNKKRLGKNL--------------------- 335

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + D         + S  D           A+ +   +  ++             
Sbjct: 336 ------RTDQGPGEPVRVYESPTDLAE--------AQWMVEEMRQLVRDG---------- 371

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              K++ VL R    + +I         +  +           +   IK  +A  R + +
Sbjct: 372 FDRKEMAVLYRSNAQSRVIETAL----FNASVPYRVYGGLRFFERAEIKHALAYLRLLEN 427

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           ++DD SF+ ++  P        + ++    R    ++++ +        S     +  I 
Sbjct: 428 KDDDTSFLRVVNFPPRGIGARTLEQLQDAARTAGRSLHDAVHAVGGKAGSNLTAFVAKID 487

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN--------- 539
            L    Q  S  +   L+L      + + + R G + I+ L+E +N              
Sbjct: 488 VLREQTQGASLREIIELVLDHSGLVEHYKADREGADRIENLEELVNAAESFVTQEGFGRD 547

Query: 540 -------------------------------EQNSYSSLQELISELEQYPPTI-KRAHSA 567
                                          +  +  +L  L + L             A
Sbjct: 548 AVALPIDELRQSPASQGLDPNRPVIDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQA 607

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + V++MTVH AKGLE   VF+      +F H++                         
Sbjct: 608 GQDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDF-------------------- 647

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                          + EE  RL+YV +TRA  +L +          ++          +
Sbjct: 648 --------------ESLEEERRLMYVAITRARKRLYLSHSQTRMLHGQTRYNVKSRFFEE 693

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                 +    K              +++                  D    P       
Sbjct: 694 LPEGALKWLTPKNQGFTPSAFGYGGGYASTRGGGGSYSSGGGYGGSKDTFASPPVPPQKA 753

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
                    +          T L    S +    
Sbjct: 754 APSHGLRSGMQVFHNKFGEGTVLSLEGSGDDARA 787


>gi|315146962|gb|EFT90978.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4244]
          Length = 791

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 70  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633


>gi|313200171|ref|YP_004038829.1| uvrd/rep helicase [Methylovorus sp. MP688]
 gi|312439487|gb|ADQ83593.1| UvrD/REP helicase [Methylovorus sp. MP688]
          Length = 720

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/576 (16%), Positives = 194/576 (33%), Gaps = 112/576 (19%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K+        ++         +  A     + +   Y+   ++  V+DF +L++   +LL
Sbjct: 144 KQVMGYINSCKEEGLRANAVDAYDAHSQRMREIFEEYDRQCQREGVVDFAELLLRCYELL 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +    A IR        +IL+DE QDT+ +Q+  ++ L            +   +FAVG
Sbjct: 204 SRD---ASIRQHYQSRFKYILVDEFQDTNRLQYLWLKLLAG----------ADNCVFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   ++    R        +I++L  ++RS  +IL   + + + 
Sbjct: 251 DDDQSIYAFRGARVGNMRDFEQDFNVR--------NIVKLEQNYRSHGNILDAANAIITH 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             N  G +                     LW        S    +       ++ + +  
Sbjct: 303 NRNRLGKN---------------------LW-------TSAGKGEPIRVYQAYNDIDE-- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   I ++    T          +  +I +L R    + ++           
Sbjct: 333 -----ANFIVDEIKSLHSEGT----------ELSEIALLYRSNAQSRVLEHAL----FSA 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            +           +   IK  +A  R I +  DD + + ++  P        + ++    
Sbjct: 374 GLPYRVYGGLRFFERAEIKHALAYLRLIANPNDDTALLRVINFPTRGIGARSLEQLQEAA 433

Query: 460 RHETETVYEYIQKFANCGIS--KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
           R E  ++++        G      +  +  I ++   A   +  +   +       R  +
Sbjct: 434 RAEDCSLWQAAINKVGNGRPGKGVEGFVALIRQMAEEATGLTLPEMAEIATTLSGLRTHY 493

Query: 518 ISRF-GNEVIDVLDEFLNFTLRNEQNSYS--SLQELISELEQYPPTIKRAHSANHNEVRI 574
            +   G + I  LDE ++  +    N+    +L + ++                 + +++
Sbjct: 494 QNEKEGEDRIANLDELISAAVTFVNNNEDAGTLTDFLTFASLEAGE--HQAEVGRDALQL 551

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MTVH AKGLE   VF+      +  H+                                 
Sbjct: 552 MTVHAAKGLEFRTVFISGLEEGLCPHEQSL------------------------------ 581

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                + +  EE  RL+YV +TRA  +L +    + 
Sbjct: 582 ----YETNGLEEERRLMYVAVTRARQRLYLSHAQSR 613


>gi|317508740|ref|ZP_07966393.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974]
 gi|316252988|gb|EFV12405.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974]
          Length = 804

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 119/791 (15%), Positives = 227/791 (28%), Gaps = 157/791 (19%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF--SLLSSFFL 74
            +   P     ++  NK      E     +  +   +  ++              +    
Sbjct: 59  ERQARPGEILAITFTNKAAGELKERVGALVGGRMWEMWVSTFHSSCARFLRAEASAEAGF 118

Query: 75  TQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT----- 128
            + FT   +  ++ +    + +L+    +     +  +      ++     A        
Sbjct: 119 DRNFTIYDSDDSKRLLSMVAEELELDSNRFPPRMLAAKIGDLKNELITPEAALAGVEDPF 178

Query: 129 --LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             L   +   Y+E       +DF+DLI+    LL+  D    +  +      H+L+DE Q
Sbjct: 179 DLLLGQVYRRYQERLAAANAMDFDDLIMRAVQLLQTNDE---VAERWRARFRHVLVDEYQ 235

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ +IR L      G    +    L  VGD  QSIY F GA  + +   +R    
Sbjct: 236 DTNHAQYVLIRELVG-AGAGTQVGAETSALTVVGDSDQSIYRFRGATIRNIEEFERDFPN 294

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RST +IL+  + V +  E  +                     
Sbjct: 295 --------ARTVLLEQNYRSTQNILSAANAVIAHNEGRREKR------------------ 328

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW       ++    Q   + +              A  IA  I+ ++         
Sbjct: 329 ---LW------TEAGDGRQIVGYVA--------DHEHDEAGFIATEIAELVRAG------ 365

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  DI V  R    + +           + +           D   ++D++A  R
Sbjct: 366 ----AKHGDIAVFYRTNNASRVFEEAF----IRHAVPYRVVGGQRFYDRREVRDVIAYLR 417

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF---- 481
            I +  D +S   ++ +P     +    +I      + +T +E  Q  A   I       
Sbjct: 418 VIANPSDAVSLTRIINTPRRGVGDKAQAQIASWAGSQGKTFWEGCQAAAEGAIPALAARS 477

Query: 482 ----QHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
                  +  +  L     A   +  +     +     R         +    ++ LDE 
Sbjct: 478 QRSVAEFVAMLAGLRDELSAGELTVGELVAQTVERSGYRATLADSTDPQDGARLENLDEL 537

Query: 533 LNFTLRNEQ--------------------------------NSYSSLQELISELEQ---- 556
           ++  +   +                                +  + + +L   LEQ    
Sbjct: 538 ISVAVEYGEMAAGQEGGAVADGLAGELRVALPPEEEGESGADGDAGVAKLRDFLEQVSLV 597

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                     +    V +MT+HTAKGLE PVVF+       F H       +        
Sbjct: 598 ADSDRLPEGGSESGVVTLMTLHTAKGLEFPVVFMTGLEEGQFPHLRSLGDPV-------- 649

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--SNTSNEK 674
                                        E  RL YVG+TRA +QL + +          
Sbjct: 650 --------------------------ELAEERRLAYVGITRAREQLYVSRSLTRTFRGSP 683

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
            +N  + + +         R  +   T +           +       P  R    +   
Sbjct: 684 MTNPPSRFLIEIPPHLVSWRRGEPDQTWAGFTRSDFGSVSAPRAENAAPFRRPAAERGPR 743

Query: 735 DEQKIPKKLFS 745
               +  + F 
Sbjct: 744 PRPNLRHESFE 754


>gi|315172193|gb|EFU16210.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1346]
          Length = 791

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 214/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 70  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480

Query: 468 EYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q             +  +    I +L     + +  +     L     R+  +++  
Sbjct: 481 EAAQNVDLANVSGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633


>gi|300783060|ref|YP_003763351.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
 gi|299792574|gb|ADJ42949.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
          Length = 1080

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 135/1031 (13%), Positives = 283/1031 (27%), Gaps = 152/1031 (14%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            ++   +    +     L       +     + + +   +     + +         +   
Sbjct: 115  VAGEPTVLTYHAYAGRLLSEHGLRLPVQPGVRLLSETSSWQIAHRVVSTWDNELDTDRVP 174

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
              +++  L       +++++ E   +      ++ ++       R               
Sbjct: 175  PTVTADLLALAGELGEHLVSTEQLAEYTTWLCRVIENAPRAKGQRAALPQKLTEIMAAQH 234

Query: 127  LTLAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              LA   L   Y   K+    LDF D +     L         +     +    +L+DE 
Sbjct: 235  FRLALLPLVDDYHRRKRNEGALDFADQMSLAAQLAGGYPS---VVRGERERYGAVLLDEY 291

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT   Q  ++R+L           + P  + AVGD  Q+IY + GA    + R      
Sbjct: 292  QDTGHAQRVLLRALFG------GVENPPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFP 345

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
            +             L  SFR+  +IL + + +           E          + I   
Sbjct: 346  RFDGERLVPAHEFGLLTSFRNPPEILDLANAIAEPLRARGLGVERLRAREGAGPADIACA 405

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                L   + ++     +     W ++ +                               
Sbjct: 406  ----LLPDIRAERAWVADALARRWYAHQEQTG---------------------------- 433

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                  +     VLVR+R D   I    R       + V       L D   + DL++  
Sbjct: 434  ------KPPTAAVLVRRRADMAPIAAELRA----RGLPVEVVGLGGLLDEPEVADLVSTL 483

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
            + +       +   +L    +  S  D+  +  +  E  +  +           +   +I
Sbjct: 484  KVLADPLSGSAAARLLTGARWRLSAADVAALWRRAGELSSPEKPDTPELVVERVEQAGLI 543

Query: 486  KYIHE-----------------------LIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              I E                        +      S  +    +        + ++R G
Sbjct: 544  DAIDEPGDPARYSDEGYKRIRRIGWELAALRRRLDQSLPELVADVERTMLLDVESLARPG 603

Query: 523  NEVIDVLDEFLNFTLRN-EQNSYSSLQELISELE----QYPPTIKRAHSANHNEVRIMTV 577
            +     LD F        E    ++L   +  L                   + V+++TV
Sbjct: 604  SAGRAHLDAFAEVVTDYAETAPTATLLSFVDYLNTAAHAEDGLTPGEVEVVPDRVQVLTV 663

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS-------LNDDPGIPIWIPQSKSRNN 630
            H+AKGLE  VV +      VF  +      +  +         D   +P           
Sbjct: 664  HSAKGLEWEVVAVPHLVHDVFPGRRRSSSWLRTATSLPAKLRGDAEDLPELRIAEGYDRK 723

Query: 631  IVSDLIKHLK----KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
             V + ++  +    +  Q E  RL YV +TR+   LI+  H    +  +    + +    
Sbjct: 724  EVQEGLELHEAGFVEREQAEERRLCYVALTRSEHALIVSGHWWNESSSRVKGPSEFLTEI 783

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET----------------- 729
                 +    ++        ++      S       P++                     
Sbjct: 784  ADVVRETGAGQLAEWAPEPTEDDENPLVSDSRAARWPVDPLSDRRTGVQTGVELVSEALA 843

Query: 730  ------------------------IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                                    +++   +    K +  P +  +++   L        
Sbjct: 844  SSPDEEASEEDDDPDGWLTDTDVLLEEWARKDDHVKLVPLPSRLSVSQLVALADDAARLA 903

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                    +  N    RG   H  L+  F   +            +   L  A ++    
Sbjct: 904  ADLRRPLPVEPNSFARRGTEFHGWLERRFAGDQ----------LIEIDDLPGAADFGEAP 953

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYK 884
             +    L+     +  +  S   V+V    +   + + + GR+D +    +    + ++K
Sbjct: 954  DADFEELQTEFEKSEWA--SRVPVAVEVTFSADVEGLTLRGRMDAVFADPEGGWTVVDWK 1011

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLN- 941
            T    P   E        QL+ Y          P + +     YV   +    P + L+ 
Sbjct: 1012 TGAVPP---ESRIPALSVQLAAYRMAWAALKNVPVEQVRAAFHYVRANRTIR-PADLLDP 1067

Query: 942  KAFAEISTKIP 952
            +A   +   IP
Sbjct: 1068 EALRSLLRDIP 1078


>gi|218283946|ref|ZP_03489814.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989]
 gi|218215525|gb|EEC89063.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989]
          Length = 1036

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 143/891 (16%), Positives = 289/891 (32%), Gaps = 101/891 (11%)

Query: 43   NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             P   +  +              F      +L      +K I   + +K     KE   +
Sbjct: 228  KPEDYEIKKEYLSKCLDTTSYSDFKSQFELYLKNTIGFKKTIDKVDYSKYQTSFKEHETR 287

Query: 103  SQDEFIKIRDRFNTYKMFK-STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
              +            +  K        L   +  +++  KKK  V+DF D+      LL+
Sbjct: 288  IVENLFDEAFYLKDIQSHKNLVDTLFDLTNKVKLYFQLEKKKMEVIDFNDMEHFAYQLLQ 347

Query: 162  KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                   I+ ++  +   IL+DE QDT+ +Q ++I S   +             +F VGD
Sbjct: 348  DP----MIKEEMYNKYQMILVDEFQDTNELQEKIIASFCHE-----------NNVFRVGD 392

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             KQSIY F  A PK +       Q          + + L  ++RS A ++   +  +S  
Sbjct: 393  IKQSIYGFRQANPKIM-------QAWMEKEDDNNTPLLLQENYRSNASVIQFNNDFYSKI 445

Query: 282  ENAQGLSEDSTTTIRHRSSRIG--QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             N + L E             G  +     +        D + N              ++
Sbjct: 446  MNNELLGEQFEEIDIANVGTKGQMESPQYPVRFLYTEYKDEEGNKATI----------KK 495

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            +        IA  I                 +  K + VL R            + +   
Sbjct: 496  NHNENRFDLIAQDIIEKHNAG----------MPYKSMCVLTRNHA----PQEKLKAVFEA 541

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
            Y I  +         + AI+ +++  + +    DD+S    L SPLFN S   I K C  
Sbjct: 542  YNIPAMITIDHGFFTNPAIQIVISTLKALEDLTDDISLCASLMSPLFNVSFSQIAKCCID 601

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
            + +  ++Y  I+          +  +K   EL       +       I         + +
Sbjct: 602  KEKGTSLYMSIKN---------EDFMKPFFELYTNKNK-TITQLLQYIYAYNNF---YYA 648

Query: 520  RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIM 575
                +  + LD  L    + E  +   +   + +L +     +   ++      + V++ 
Sbjct: 649  STTIQDKNNLDYLLELAGQFENQN--DIHSFVLQLSKDAMQDQTQEASLYGKEDDVVQVK 706

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGL+ PVV+++    Q   H     + +  +L           + K  +     L
Sbjct: 707  TMHQSKGLQFPVVYILSQHEQRDKHGSS-CILLDSTLGLSLKGLSLDYKLKYNSIYHLAL 765

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                + +   E  R+ YV  TR   +L+I                  D +         +
Sbjct: 766  QTKKELNDLAEEMRVFYVATTRPQKELVIV-----------------DTIESIEDFYSPL 808

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                L    +   W+ + ++         +++  + +   + +     ++          
Sbjct: 809  NAYTLLEDESYTGWLLHTYANTSDSLVVFDKKSELYERPLKVRQNNTPYTLPTYSKASKA 868

Query: 756  ILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
              + +    K K + + + LS N    RG + H   +++       ++  I SY T    
Sbjct: 869  FSSQTASGAKIKLDWKEVSLSKNMGTIRGTLFH---EIVAQCAYPYQEKEIISYATSYGY 925

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS 874
                 +    +  I  L E+ + ++ M                 +K+ ++ G +D +   
Sbjct: 926  TLKDHD----IKQILALNEDSLYSSWMKEKHV----FEQSYIIEEKNQVVHGFMDLVIYK 977

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            +  + I ++KT        + +   +  QL  Y+K +K    N  +   + 
Sbjct: 978  KDEVIIVDFKTDAT--DNEKKLIDLYAIQLQTYKKAMKKL-TNLPINTYIY 1025


>gi|153814085|ref|ZP_01966753.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756]
 gi|317499894|ref|ZP_07958130.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087883|ref|ZP_08336808.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848481|gb|EDK25399.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756]
 gi|316898611|gb|EFV20646.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409578|gb|EGG89019.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 750

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 111/728 (15%), Positives = 224/728 (30%), Gaps = 140/728 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++  +L            
Sbjct: 27  GAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAEEMRQRVDSLVGIGAESIWVST 86

Query: 66  FSLLSSFFL-----------------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
           F  +    L                 T         + ++ +  +   KE++        
Sbjct: 87  FHSMCVRILRRYIDRLGYDNRFTIYDTDDQKTLMKEVCRKTDIDTKRFKERM--LLSVIS 144

Query: 109 KIRDRFNTYKMFKSTL--ASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
             ++     + F+       + L    +   YE   + N  LDF+DL++ T  LL+ +  
Sbjct: 145 SAKNEMILPEEFELNAGGDFVQLKIAKVYKEYEAQMRANNALDFDDLLVKTVQLLETQPD 204

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +R    +   +I++DE QDT+ +Q+ ++  L   +          R L  VGD+ QS
Sbjct: 205 ---VRENYQERFRYIMVDEYQDTNTVQFRLVSLLAGKY----------RNLCVVGDDDQS 251

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY F GA  + +L  ++              +I+L  ++RS  ++L V + V    +  +
Sbjct: 252 IYKFRGANIRNILDFEKEF--------SDAKVIKLEQNYRSVGNVLEVANSVIRNNKGRK 303

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             +                     LW             ++     +  +  +       
Sbjct: 304 EKT---------------------LW-------TDNEKGEKIRLRQFDTAYDE------- 328

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A+ IA  I +                   D  VL R    + L+      +     I   
Sbjct: 329 AQFIAEDIKDETAQG----------ANYSDHAVLYRTNAQSRLLEEKFVAM----NIPYK 374

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464
                       IKD+++  + I + +DDL+   ++  P        I +I         
Sbjct: 375 IVGGINFYSRREIKDVLSYLKTIDNGKDDLAVRRIINVPKRGIGLTTINRIQESAAARGI 434

Query: 465 TVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
             Y+ +             SK       I      ++     D  T ++      +   +
Sbjct: 435 GFYDALSAPDLIPGIGRSASKLDSFAALIEYFKGRSEESGVTDLLTEVIEKTGYTESLEA 494

Query: 520 RFGNE---VIDVLDEFLNFTLRNEQN-----SYSSLQELISELEQYPPTIKRAHSANHNE 571
               E    +  +DE ++     E++        +L   + E+         + + + + 
Sbjct: 495 DDPEELEARVQNIDELVSKAAVYEESCSDRGERPTLSGFLEEVALVADID--SVAEDRDY 552

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H+AKGLE P V+L      +F          M    DDP       +       
Sbjct: 553 VILMTLHSAKGLEFPHVYLAGMEDGLFPS-------YMSISGDDPEELEEERRLC----- 600

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                               YVG+TRA ++L +          +    +    + +    
Sbjct: 601 --------------------YVGVTRAEEKLTLTCARMRLVRGERQYNSMSRFIKEMPSA 640

Query: 692 DERVKKIK 699
                K +
Sbjct: 641 LIDTGKRE 648


>gi|225870395|ref|YP_002746342.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047]
 gi|225699799|emb|CAW93615.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi
           4047]
          Length = 763

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 125/780 (16%), Positives = 241/780 (30%), Gaps = 135/780 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--------- 56
           G    ++  L ++  + +    V+  N             + ++A  L  A         
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERALALSPATKDTLIATF 87

Query: 57  ----SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIR 111
                +    E      +  F       Q+ ++ + +   + D K+  ++         +
Sbjct: 88  HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVKALNLDPKKWSERSILATISNAK 147

Query: 112 DRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +     + ++   + L           Y+E  +++  +DF+DLI+ T  L  +      +
Sbjct: 148 NDLLDERAYELGASDLYSQTVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNPD---V 204

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                Q   +I +DE QDT+  Q++++  L   F          + +  VGD  QSIY +
Sbjct: 205 LAYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRF----------KNICVVGDADQSIYGW 254

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +L  ++              ++ L  ++RST  IL   ++V     + +    
Sbjct: 255 RGADMQNILDFEKDYP--------DARVVLLEENYRSTKKILQAANEVIQHNRHRRPKK- 305

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW           + +Q  +    D   +       A  +
Sbjct: 306 --------------------LW-------TQNADGEQIVYYRANDERDE-------AVFV 331

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A TISNM           +     KD  VL R    +  I            I       
Sbjct: 332 ASTISNM---------CLELGKSFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGG 378

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
                   I+D++A    + +  D+LSF  ++  P        + K+      + +++ E
Sbjct: 379 TKFYSRKEIRDVIAYLTVVANPSDNLSFERIVNEPKRGVGPGTLDKLRQFAYGQGQSLLE 438

Query: 469 YIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                               +   + +L       S       +L           +   
Sbjct: 439 AASSLEQSPLKGKAAQAMLALASLLSDLRADLDQLSITALAEALLEKTGYLDMLRVQNTL 498

Query: 524 E---VIDVLDEFLNFTLRNE------QNSYSSLQELISEL-EQYPPTIKRAHSANHNEVR 573
           E    I+ ++EFL+ T   +      Q   + +  L   L +          +A   EV 
Sbjct: 499 ESQARIENIEEFLSVTKSFDDLSAQQQEHEAGIDRLGRFLNDLALIADSDDGNAETAEVT 558

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFL+     VF                                   
Sbjct: 559 LMTLHAAKGLEFPVVFLIGMEEGVFP---------------------------------- 584

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   EE  RL YVG+TRA + L +   +  +   KS+       + +   N  
Sbjct: 585 LARAAEDQDELEEERRLAYVGITRAEECLFLTNANTRTLFGKSSYNRPTRFLKEMSENLL 644

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             + +      +     + +          L      ++ M +        +P+    N 
Sbjct: 645 SFQGLARPAHASFGVTFSQQGQRQFGTGMSLSEAIQSRKSMAQPARAASTSTPLPFGPNA 704


>gi|154244732|ref|YP_001415690.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154158817|gb|ABS66033.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1107

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 159/957 (16%), Positives = 313/957 (32%), Gaps = 85/957 (8%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L  R  + L E+     + L   P    +        ++          A       +  
Sbjct: 206  LSGRPDIDLVEAVADFRRWLSAQPLEPKTLELVGQLETLADHFAGSFATAPVFDTLWRLA 265

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                   +    F       +          +  +L  +  +                  
Sbjct: 266  HPARLPCMRRYTFDLLTPRTKTAWDKAAGKDRGAELNAEAGRHFARVDHCYRVILGRVAT 325

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                        + A Y   K+   VLDF+DL+     L++  D    +R  + Q  +HI
Sbjct: 326  ALVAKLSDELDEVLADYAAFKRAAAVLDFDDLLERARALVRGHDA---VRRALGQRYSHI 382

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFV--GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             +DE QDT  IQ E++  +  D      +++      LF VGD KQ+IY F GA+     
Sbjct: 383  FVDEFQDTDPIQAEILFRIAADDSPPRWQDSRLRAGALFMVGDPKQAIYRFRGADVGSYA 442

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +    +R  N      I+++  +FRS   IL+ +++ F+ P +AQ             
Sbjct: 443  EARSAIARRWPNN-----IVQITANFRSRPAILSHINRCFATPLSAQ------------- 484

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                 Q G V+L   +           + +     DS   +      A  +A   + +IG
Sbjct: 485  ----NQPGYVELAPTLDPPDHDLPCAAKITIDLPPDSRAAQI-RDAEAEVVADLCARLIG 539

Query: 359  TDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
              TI   +G    +    I +L     +                + +       L     
Sbjct: 540  NVTIRDEDGDLAPLTPGGIALLAPTGSELWRYERAFEA----RGLRIASQAGKGLFRRQE 595

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC------TQRHETETVYEYIQ 471
            ++DL+AL R +    D L+F  +++ PL   SE+++  I         R E    +    
Sbjct: 596  VQDLVALVRVLADGGDTLAFGALMRGPLVGLSEEELLDITAGLPPLADRPEAIPRFSLAT 655

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDV 528
               +      + V+  + +L   A+  +P       +     R    +R G+        
Sbjct: 656  DADDVAHPVARRVLTILQDLRRRARATTPALLLAEAVERLAVRPILSAREGDRSARAAAN 715

Query: 529  LDEFLNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            ++  L                ++  +        +    A+ + + I+T+H+AKGLE PV
Sbjct: 716  VEALLERARPYGVKGMKRFARDVSRDWRGGAAYNEGRVDADGDAIEIITIHSAKGLEWPV 775

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V  ++T + + S +        P ++      +           +   ++   +S   E 
Sbjct: 776  VIPINTATLLRSRE--------PFVHRADDDTLHWVIGDVVPPELRAALETDDESLTRER 827

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             RL YV  TRA + LI+ + +    +      +W  +V         +   ++T +    
Sbjct: 828  ERLWYVACTRARELLIVPELAQAEQK------SWARVVNLGHDALPELDISRMTPAP--- 878

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
                   S   P     E     +  ++E  +      P  +D +    +   T+D    
Sbjct: 879  ----MPMSADPPNTQTAELFAAERATIEEAAVALTWVRPSDHDPDRLEAVEAITLDAGDA 934

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLP--------EHKRKNFITSYCTKNAKLWPAK 819
              ++  +       RGL++HKL++ + +            + +  +T             
Sbjct: 935  PEVDLPVG--AGRVRGLLLHKLMEEVLSGELVEEVGRFVSRARELLTELVLDPDDSEALP 992

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI- 878
            +   +  +  R L+ P +          E  V   +    K   ++GRID I+ +     
Sbjct: 993  DSDEIAATAWRTLQLPDIAAL-RDRLTPEWPVYALLEDSSKPRALAGRIDAIAYTGDRAE 1051

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             + ++K+          +   H  QL  Y +              L+Y++   V  +
Sbjct: 1052 VVVDWKSDVDPSDADIRL---HAGQLEDYLRA-----TGAP-RGALVYMTPGLVRWV 1099


>gi|307289586|ref|ZP_07569530.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109]
 gi|306499400|gb|EFM68773.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109]
 gi|315164585|gb|EFU08602.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1302]
          Length = 791

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 70  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEES 598

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633


>gi|255283739|ref|ZP_05348294.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469]
 gi|255265804|gb|EET59009.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469]
          Length = 594

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 104/637 (16%), Positives = 203/637 (31%), Gaps = 99/637 (15%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   N             + ++   L            
Sbjct: 27  GAGSGKTRVLTHRVAYLIEEKGVKPWNILAITFTNKAAGEMRERVDNLAGPEAGSVWVST 86

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L     +   + N    + + +   +K+  KK   +   +++R     +  +
Sbjct: 87  FHSLCVRILRRFIDRLGYENNFTIYDTDDQKSLMKDICKKLNIDTKMLKERTILAAISSA 146

Query: 123 TLASLTL---------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
               +++                      Y+E  K+N  LDF+DL++ T +L +      
Sbjct: 147 KNELISVEAFEKQNFGDFNRRRIAAAYTEYQEQLKRNNALDFDDLLMKTVELFQS---CE 203

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +         +I++DE QDT+  Q+ +I  L   +          R L  VGD+ QSIY
Sbjct: 204 DVLAYYQDRFRYIMVDEYQDTNTAQFRLISLLAAKY----------RNLCVVGDDDQSIY 253

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA  + +L  + +             +I L  ++RST  IL   + V       +  
Sbjct: 254 KFRGANIRNILDFETVFD--------DAKVIRLEQNYRSTKHILEAANNVIKNNVGRKEK 305

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +  +                                                      A 
Sbjct: 306 TLWTENEEGSLIKAKQFPSAFD-----------------------------------EAE 330

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I+  +              Q  D  VL R    + L             I     
Sbjct: 331 FVAENIAGQVRRGE---------AQYGDFAVLYRTNAQSRLFEEKF----LMANIPYKIV 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     IKDL+   + + +  DDL+   ++  P        + K+         + 
Sbjct: 378 GGVNFYARKEIKDLLCYLKTVDNARDDLAVRRIINVPRRGIGAATLTKVQSYAMDHEISF 437

Query: 467 YEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           Y+ +++ A        +SK Q  + +I  L   A+F   ++    I+ +    ++  +  
Sbjct: 438 YQALEQAAEIPGLGRSVSKLQDFVTFIRTLRSQAEFLGVNELLGQIIESTGYVKELEAED 497

Query: 522 GNEVI---DVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
            +E     + +DE ++  +  E++    SL   + E+         +   N + V +MT+
Sbjct: 498 TDEARARIENIDELISKVVTYEESTGEPSLSGFLEEVALVADID--SLDENESRVVLMTL 555

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           H+AKGLE P V+L      +F               +
Sbjct: 556 HSAKGLEFPNVYLTGMEEGLFPSHVGFDEDPDALEEE 592


>gi|283457344|ref|YP_003361920.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133335|dbj|BAI64100.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 985

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 119/731 (16%), Positives = 223/731 (30%), Gaps = 148/731 (20%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   + P   +  +S  + +    +          A  L+         +  
Sbjct: 199 AAAEMRERIEALVGPRAKHMWISTFHSFCVRVLRR-----EAAALGLKSTFTIYDSTDS- 252

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L S  + +     K    + +  +   LK +L  +         R  +   ++ T   
Sbjct: 253 QRLLSLIIKELNLDTKKFTAKAVGNRISALKNELVSA----EAYASRVASDNPYEKT--- 305

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  +    LDF+DLI  T  LLKK      I     ++  HIL+DE Q
Sbjct: 306 ---IAQIYTVYTQRLRAANSLDFDDLIGRTVFLLKKFPE---IANYYRRKFRHILVDEYQ 359

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRT------LFAVGDEKQSIYSFHGAEPKRVLRE 240
           DT+  Q++++R L                      L  VGD  QSIY+F GA+ + +   
Sbjct: 360 DTNHAQYQLVRELVGAHVKAPADRGPYPDAVPPAELTVVGDSDQSIYAFRGADIRNITDF 419

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           ++               I L  ++RST +IL+  + V     + +               
Sbjct: 420 EKDYPN--------AHTILLEQNYRSTQNILSAANAVIERNPDRRPKK------------ 459

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW        S    +   + +         S    AR I   I  +    
Sbjct: 460 ---------LW------TASGAGAKIIGYVA--------ESEHAEARFITREIDRLADE- 495

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +Q  D+ +  R    +  +  +         +           +   IKD
Sbjct: 496 --------HGVQPGDVAIFYRTNAQSRTLEDML----MRAGLPYRVVGGTRFYERKEIKD 543

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN---- 475
            +A  R + + +DD++   +L  P           +         + +   ++ A+    
Sbjct: 544 ALAYLRALSNPDDDVNVRRILNEPKRGIGAKSESVVADYATAHRISFFAAARQAADVPGL 603

Query: 476 --CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
               + K+   ++ + +L  IA+          +L          +    +    ++ L 
Sbjct: 604 GAAAVKKYAEFVRLMDDLAQIARTEPAATCLEAVLEQTGYLAALRASKDIQDESRVENLS 663

Query: 531 EFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANH-------------------- 569
           E L+  +  E  +  + L++ +  +          +                        
Sbjct: 664 ELLDAMVEFETENPGADLEQFLEHVALVADADSIPNRPASAEGESASAAQIAAEAAEAKA 723

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V +MT+HTAKGLE PVVFL      +F H+                           
Sbjct: 724 QGMVTLMTLHTAKGLEFPVVFLTGMEHGLFPHQRALT----------------------- 760

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                       +    E  RL YVG+TRA ++L + +    +   KS        + + 
Sbjct: 761 -----------DEKEMSEERRLAYVGLTRAMERLYLTRSETRTMWGKSQFNPPSPFLEEI 809

Query: 689 FHNDERVKKIK 699
                  K+  
Sbjct: 810 PEELIEWKRTA 820


>gi|229548667|ref|ZP_04437392.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200]
 gi|307269775|ref|ZP_07551105.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248]
 gi|312953106|ref|ZP_07771955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102]
 gi|229306183|gb|EEN72179.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200]
 gi|306513885|gb|EFM82487.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248]
 gi|310628940|gb|EFQ12223.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102]
 gi|315036100|gb|EFT48032.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0027]
 gi|315153983|gb|EFT97999.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0031]
          Length = 791

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 70  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEES 598

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633


>gi|262172714|ref|ZP_06040392.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451]
 gi|261893790|gb|EEY39776.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451]
          Length = 723

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 116/690 (16%), Positives = 220/690 (31%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++ T +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRTLELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +                + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARVENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQANLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLIANRNDDTAFERVINTPPRGLGDKTLDTIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N               ++ I+ L         H      +      + +    G 
Sbjct: 441 SIGLLNDQVLTGRAAGALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLFEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P+VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|225848053|ref|YP_002728216.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644159|gb|ACN99209.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 700

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 126/712 (17%), Positives = 241/712 (33%), Gaps = 133/712 (18%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQC-IEERFSLLSSFFLTQKFTP---QKNIITQEINKK 92
           L++   N    +  + +++A   +      F   ++ FL  +       +N +  + +  
Sbjct: 58  LAITFTNKAAEEMKERVEKALGERPQWVMTFHSFAAKFLRFEAEKVGYDRNFVIYDEDDS 117

Query: 93  SPDLKEKLKKS--------QDEFIKIRDRFNTYKMFKSTLASLTL----AKYLNAHYEEA 140
              +K+ LK           D+      +       +  L  L+      + +   YEE 
Sbjct: 118 KKLIKKVLKDLNLNEELIKPDKVKDYISKIKQEDNPEEYLDLLSFSVPHIRNIYEKYEED 177

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            K +   DF+DL++ +  +LK       I  +   + ++IL+DE QDT+ +Q ++++ L 
Sbjct: 178 LKNSNAFDFDDLLVKSVKILKNNPE---ILQRWQNKFDYILVDEYQDTNKVQHQLLKLLV 234

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                      S  T+  VGD  Q IY++ GA P+ +L  ++              II+L
Sbjct: 235 G----------SRNTITVVGDPAQCIYTWRGAHPENILDFEKDFP--------GTKIIKL 276

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  IL   + V S  +                         + LW         
Sbjct: 277 ERNYRSTKKILDAANAVISKSKGKWKSKL------------------LTLW-------TE 311

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +   ++    +  +   +       A  IA  I  +                 KD  +LV
Sbjct: 312 KEEGEEIRLVALSNEKEE-------ASFIARKIKEL-----------SSATDYKDFAILV 353

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R       +T           I           +   +KD+++  R  L+ +D  SF   
Sbjct: 354 R----MSFLTRNLEEAMMLNSIPYQIVGGLKFYERAEVKDILSYLRLALNPKDYASFERS 409

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF--- 497
           L +P     E  +  I +  +  +   E ++K       K +  IK   +L+        
Sbjct: 410 LTTPPRGIGEKGLEVIKS--NFVDNWIEALKKSLPHFNQKVKSSIKEYLDLMDYVIENAN 467

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQELISEL 554
            +P      I    K  +     +  +  D    ++E +      E++     + L   L
Sbjct: 468 LNPSKVVKHIFEKIKYEEYLQKEYSKDWEDRVANINELIVALEEIEKSG----KTLTEFL 523

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           E+   +  + +  + N+V+IMTVH AKGLE   VF+      +F                
Sbjct: 524 EESSLSQAQDNLEDTNKVKIMTVHAAKGLEFNTVFVAGLEDGIFPSGRSFDDPT------ 577

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                         EE  RL YV +TRA ++L +         K
Sbjct: 578 ----------------------------QLEEERRLFYVAITRAKERLFLTYAK---ERK 606

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
               ++    +     + +   K + T+     +  A ++ T+ P +  +E 
Sbjct: 607 SFGNKSVPTKLSQFLKDIKEHVKSQSTSKSASPQHTAVKYKTNKPSDGEIEA 658


>gi|171464032|ref|YP_001798145.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
 gi|171193570|gb|ACB44531.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius
           STIR1]
          Length = 788

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/723 (15%), Positives = 233/723 (32%), Gaps = 132/723 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W +   QVS I              ++ +   +   +        
Sbjct: 36  GAGGGKTRVLTTRIAWLIQTGQVSPIGVLAVTFTNKAAKEMMLRLSAMLPINTRGMWIGT 95

Query: 66  FSLLSSFFL----TQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
           F  L +  L     +   P     + TQ+       L + LK   +++   + ++     
Sbjct: 96  FHGLCNRLLRAHHKEAGLPSTFQILDTQDQLSAIKRLLKGLKVDDEKYPAKQLQYFIAHA 155

Query: 120 FKSTLASLTL---------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +    +  L            L A Y+E  ++  V+DF +L++ + +LLK  +    IR
Sbjct: 156 KERGQRAKDLSVGDDFQAKMAQLYAAYDEQCQREGVVDFAELLLRSYELLKHSEA---IR 212

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSF 229
               +   HILIDE QDT+ +Q+  ++ L+       N       ++FAVGD+ QSIY+F
Sbjct: 213 THYQERFRHILIDEFQDTNALQYAWLKLLSGHDASSINVSGMGSSSVFAVGDDDQSIYAF 272

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +   ++              +++L  ++RS   IL   + + +      G + 
Sbjct: 273 RGADVENMRLYEKQYHPL---------MVKLEQNYRSHGHILDTANHLIANNSERLGKNL 323

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                                      + D+        + +  D           A  +
Sbjct: 324 ---------------------------RTDADHGEPVRIYEAPSDHAE--------AAWL 348

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I  ++ +           I+  ++ +L R    + +I            I       
Sbjct: 349 VDEIKALVNSG----------IKRTEVALLYRSNAQSRIIEHAL----FSAGIPYRVYGG 394

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IK  +A  R + +  DD SF  ++  P        I  +    R +  ++Y 
Sbjct: 395 LRFFERAEIKHALAYSRLLENPNDDTSFSRVVNFPTRGIGARSIEVLQDAARAQQCSLYL 454

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVID 527
                     +     ++ +  +    +  +  +    ++      Q ++  R G + ++
Sbjct: 455 AASTLEGKAGAALGGFVRLVDHMREATRHNTLPETVEFVIQHSGLIQHYLSEREGQDRVE 514

Query: 528 VLDEFLNFTLRNEQNSYSSLQE------------------LISELEQYPPTI-KRAHSAN 568
            L E +N                                 L + L             A 
Sbjct: 515 NLQELINAATAFIAEEGYGQDAAAAMLSGENAPGVAEVSPLAAFLSHASLEAGDNQAQAG 574

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V++MTVH+AKGLE   VF+      +F H++                          
Sbjct: 575 QDAVQLMTVHSAKGLEFTSVFITGLEEGLFPHENSVN----------------------- 611

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                      +++  EE  RL+YV +TRA ++L +    +     +         + + 
Sbjct: 612 -----------EQNGLEEERRLMYVAITRAKERLYLSHTQSRMLHGQVRYNMPSRFLEEL 660

Query: 689 FHN 691
             +
Sbjct: 661 PSD 663


>gi|209694270|ref|YP_002262198.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238]
 gi|208008221|emb|CAQ78366.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238]
          Length = 1208

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 138/890 (15%), Positives = 281/890 (31%), Gaps = 145/890 (16%)

Query: 113  RFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                 +  +     L+LA        ++AK++   L F+DL+        K   +A +  
Sbjct: 321  DDFLAQPLEIKQPLLSLAIHKCRETLQQAKEQKNWLSFDDLLTQ-LSAATKNQENALLLE 379

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            KI ++    LIDE QDT  +Q+ +  ++ +D         S   LF +GD KQ+IY+F G
Sbjct: 380  KIREQYPIALIDEFQDTDPLQYSIFNTIYQD--------QSQCGLFMIGDPKQAIYAFRG 431

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED- 290
            A+    ++ +R      T          L  ++RSTAD+++ V+++F   +      +D 
Sbjct: 432  ADIFTYIQARRQVADHYT----------LDTNWRSTADMVSSVNRIFEHGKQPFLYDDDI 481

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF---DSLPQESSASILAR 347
                +++      Q              D+Q  P    W       + + + +   ++A 
Sbjct: 482  PFYPVKYNPINAEQKSW---------SLDNQTQPAMTFWLQESKDGNPINKGNYQRVMAE 532

Query: 348  RIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  I  ++     G+  + +  KK  I+A +I VLVR  K+  L+      L      
Sbjct: 533  STAAQIQTILTGSQQGSAHLQNGEKKEAIKAGNIAVLVRTGKEGKLVRE---ALSKQGIA 589

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            SV  ++R  +      KD++ L +  ++  D  +    L S LF ++ D + +      +
Sbjct: 590  SVYLSNRDSVFSSPLAKDILRLLQAAMTPTDARAVRSALASSLFAYTADQLHQFNVDEMQ 649

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                              ++  +                     I+  +   ++ ++  G
Sbjct: 650  ------------------WELAVNEFRTYRKHWLQRGIMPMLHQIITQQGISERLLAENG 691

Query: 523  NEVI----DVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIM 575
             E        + E L  T +   + Y  L+ L   + +             +  N V+I+
Sbjct: 692  GERHLTDLLHIGELLQQTSQTLDSDYGLLRWLSDAISEPNGDAEEQTVRLESERNLVQIV 751

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE  +VFL    S     K  +               +             + 
Sbjct: 752  TIHKSKGLEYDLVFLPFVCSYRAVDKKGEVSFYDEDNRYSVLDLLKE----------DES 801

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            ++  +K    E  RL+YV +TRA     I          KK         +       + 
Sbjct: 802  VEKAEKERLAEDLRLIYVALTRAVYACYIGMAPIGKGTSKKPPTGVHLSGLGYLIQQADE 861

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLERE--------ETIKQLMDEQKIPKKLFSP 746
                +L   + K            P+                     + +        + 
Sbjct: 862  CDIAELQACLEKLIAGNSPMVIQSPQTLSDVLYKETEDNLFALTANKLSKPVKSNWWMTS 921

Query: 747  IKNDINEPYILNPSTID---------------TKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
                + +    N S+++                       ++ +  +    G  +H L +
Sbjct: 922  YSGLVKQGNHHNDSSLELINLDVDSAEDKDDKELDLEPERTIFTFPRGARAGTFLHSLFE 981

Query: 792  VIFTLPE---HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------MMTTAMS 842
             +         +    I     K    +  +    +   + R+L+ P       + T   
Sbjct: 982  EVEFTQPINSEENTQIIIKLLEKE--NYDVEWLDVVQSMMQRVLDCPLDGHDLRLATKGP 1039

Query: 843  CDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISISQQN 877
                 E+     I      ++                         + G ID +   +  
Sbjct: 1040 TQRLVEMEFLLPITLLNSSLVNKTIAKHDEVSARAGELGFSTVSGMLKGFIDLVFEHEGK 1099

Query: 878  IFIFEYKTHHHVPQEI--------EHIPY-THIAQLSIYEKILKDSYPNK 918
             ++ ++K++H              E +    +  Q  +Y   L     ++
Sbjct: 1100 YYVLDWKSNHLGDSPECYGGDALIEAMRDHRYDFQYQLYALALHRFLKSR 1149


>gi|225868652|ref|YP_002744600.1| ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701928|emb|CAW99448.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 763

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 124/780 (15%), Positives = 241/780 (30%), Gaps = 135/780 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--------- 56
           G    ++  L ++  + +    V+  N             + ++A  L  A         
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERALALSPATKDTLIATF 87

Query: 57  ----SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIR 111
                +    E      +  F       Q+ ++ + +   + D K+  ++         +
Sbjct: 88  HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVKALNLDPKKWSERSILATISNAK 147

Query: 112 DRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +     + ++   + L           Y+E  +++  +DF+DLI+ T  L  +      +
Sbjct: 148 NDLLDERAYELGASDLYSQTVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNPD---V 204

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                Q   +I +DE QDT+  Q++++  L   F          + +  VGD  QSIY +
Sbjct: 205 LAYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRF----------KNICVVGDADQSIYGW 254

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +L  ++              ++ L  ++RST  IL   ++V     + +    
Sbjct: 255 RGADMQNILDFEKDYP--------DAKVVLLEENYRSTKKILQAANEVIQHNRHRRPKK- 305

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW           + +Q  +    D   +       A  +
Sbjct: 306 --------------------LW-------TQNADGEQIVYYRANDERDE-------AVFV 331

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A TISNM           +     KD  VL R    +  I            I       
Sbjct: 332 ASTISNM---------CLELGKSFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGG 378

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
                   I+D++A    + +  D+LSF  ++  P        + K+      + +++ E
Sbjct: 379 TKFYSRKEIRDVIAYLTVVANPSDNLSFERIVNEPKRGVGPGTLDKLRQFAYGQGQSLLE 438

Query: 469 YIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                               +   + +L       S       +L           +   
Sbjct: 439 AASSLEQSPLKGKAAQAMLALASLLSDLRADLDQLSITALAEALLEKTGYLDMLRVQNTL 498

Query: 524 E---VIDVLDEFLNFTLRNE------QNSYSSLQELISEL-EQYPPTIKRAHSANHNEVR 573
           E    I+ ++EFL+ T   +      Q   + +  L   L +          +A   EV 
Sbjct: 499 ESQARIENIEEFLSVTKSFDDLSAQQQEHEAGIDRLGRFLNDLALIADSDDGNAETAEVT 558

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFL+     VF                                   
Sbjct: 559 LMTLHAAKGLEFPVVFLIGMEEGVFP---------------------------------- 584

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   EE  RL YVG+TRA + L +   +  +   KS+       + +   +  
Sbjct: 585 LARAAEDQDELEEERRLAYVGITRAEECLFLTNANTRTLFGKSSYNRPTRFLKEMSEDLL 644

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             + +      +     + +          L      ++ M +        +P+    N 
Sbjct: 645 SFQGLARPAHASFGVTFSQQGQRQFGTGMSLSEAIQSRKSMAQPARAASTSTPLPFGPNA 704


>gi|26554344|ref|NP_758278.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2]
 gi|26454354|dbj|BAC44682.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2]
          Length = 738

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 102/555 (18%), Positives = 191/555 (34%), Gaps = 120/555 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y    +   +LDF+DLI     +L+       IR K     ++IL+DE QD
Sbjct: 180 DIFAAVYEGYINFLRDGNLLDFDDLIKYARRVLE----IEEIRTKWQNRFDYILVDEFQD 235

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++I+ L+++F          + +FAVGD  Q IYS+ GA+       K+     
Sbjct: 236 TNYDQYQIIKLLSKNF----------KNIFAVGDPDQMIYSWRGAQENIFEVFKKDFSDS 285

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL + + +    +N    +                   
Sbjct: 286 L--------TIVLEKNYRSTKNILNIANSLIQKNKNRIKKNLY----------------- 320

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                             +  +    D   +        + +   I +++ +        
Sbjct: 321 -----------TDSSTESEIIYFEADDQNLES-------KFVCTRIKDLVDS-------- 354

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    KDI +L R    +  I        ++Y+I       F       +KD++A  + 
Sbjct: 355 -KKYNYKDIAILYRANYLSRNIEEFL----SNYRIPYRIFGGFKFYQRKEVKDIIAYMKL 409

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ------KFANCGISK 480
           I++  D++S   +  +P    SE   FKI         + +   +             + 
Sbjct: 410 IVN-SDEVSLTRIYNTPRRQISEATYFKIKNYAVLNNISTFAAFKFVDEIEGIQTRTKNA 468

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +     + E+    ++ S  +    I+   K  +           + + E  N +   E
Sbjct: 469 VKAFYDSMIEIREK-KYGSISEMIDDIVEKTKYYEMLKEDGEEHRTENIIELKNASKNFE 527

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           QN+  S       L++           N     + V +MTVH +KGLE  +VF++     
Sbjct: 528 QNNPGSNINF--YLQELALLTSNDEEENQKNKQDSVSLMTVHASKGLEFKIVFIIQFNEN 585

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F                                     I+ L++   +E  R+ YV +T
Sbjct: 586 IFPS-----------------------------------IRSLEEGNLDEERRIAYVAIT 610

Query: 657 RASDQLIICKHSNTS 671
           RA + L I   + TS
Sbjct: 611 RAKENLYISCCNGTS 625


>gi|326383701|ref|ZP_08205386.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197465|gb|EGD54654.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 834

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 106/662 (16%), Positives = 194/662 (29%), Gaps = 151/662 (22%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           ++   ++E     D     +    T  +      + A Y+         DF+DLI  T  
Sbjct: 160 QISNFKNELKDPDDAAAEAEADGQTDLAAGTIAQIYAEYQRRLAAANAFDFDDLIGETVS 219

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL++      +     +   H+LIDE QDT+  Q+ ++R L  D         S   L  
Sbjct: 220 LLQRHP---NVAEYYRRRFRHVLIDEYQDTNHAQYVLVRELVGDETSQSGVDPSE--LCV 274

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  QSIY+F GA  + +   +R               I L  ++RST  IL+  + V 
Sbjct: 275 VGDADQSIYAFRGATIRNIEEFERDYPN--------AETILLEQNYRSTQTILSAANAVI 326

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           S   N +                        LW       DS        + +  D    
Sbjct: 327 SRNANRREKK---------------------LW------TDSGDGDLIVGYVADSDRDE- 358

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  IA  I  ++     +S G        D+ V  R    +  +  +      
Sbjct: 359 -------AAFIAKEIEELVD----YSIGGSASHTYADLAVFYRTNTGSRSLEEVF----V 403

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-C 457
            + I           +   ++D++A  R + + +D +S   +L +P     +     +  
Sbjct: 404 RHGIPYKVVGGTKFYERKEVRDIVAYLRVVANPDDSVSLRRILNTPRRGIGDRAEACVAV 463

Query: 458 TQRHETETVYEYIQKFANCGISKFQH--------VIKYIHELIHI--------------- 494
              +   + Y+ + +     +              +  I  L                  
Sbjct: 464 HAENLGISFYQALVEATENRVPLLNTRAVKQITLFVDLIEGLRSDFLMAFGAVGGESVDD 523

Query: 495 ------AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN--- 542
                  +     +    I+     R +  +    +    +D L+E +            
Sbjct: 524 AVADATTEGADVGELVDAIVDRSGYRAELEASNDPQDAARMDNLNELIAVARDFSVEAAQ 583

Query: 543 ------------------------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                                      SL   + ++       +         V +MT+H
Sbjct: 584 RDDDDLDDADEATDDAEVVGDGEPEPGSLAAFLEKVALVADADQV-PDEGEGVVTMMTLH 642

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           TAKGLE PVVF+       F H                                      
Sbjct: 643 TAKGLEFPVVFVTGWEDGHFPHMRALGDP------------------------------- 671

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
              +   E  RL YVG+TRA  +L + +  + ++  +         + +   +    ++ 
Sbjct: 672 ---AELSEERRLAYVGITRARQKLYLTRAMSRASWGQPVSNPESRFLQEVPQHLIDWRRT 728

Query: 699 KL 700
           + 
Sbjct: 729 EP 730


>gi|116511959|ref|YP_809175.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107613|gb|ABJ72753.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 758

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 212/700 (30%), Gaps = 145/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53
           G    ++  L ++  + +    V+  N             + ++A  L            
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALALTPRAQDTLIATF 87

Query: 54  -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEF 107
                +   +           +      + +  K I+ +        + K  L    +  
Sbjct: 88  HSMCVRILRRDADHIGYNRNFTIIDPGDQKSLMKRILKEANLDPKKWEPKGLLNTISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D         +      +   +   Y++  +K   +DF+DLI+ T  L  +     
Sbjct: 148 NDLLDETAYEAQITARHPYEMVVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPD-- 205

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +      +  +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 206 -VLAYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRF----------QNICVVGDADQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++   K          ++ L  ++RST  IL   + V       +  
Sbjct: 255 GWRGADMQNILDFEKDYPK--------AKVVLLEENYRSTKTILDAANNVIKNNLKRRPK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                +LW              +  +    +   +       A 
Sbjct: 307 ---------------------ELW-------TQNDEGDKIVYFRAGNEQEE-------AN 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
           +++  IS+ + +               D  VL R    +  I            I     
Sbjct: 332 KVSEIISSGVRSGR----------SYADYAVLYRTNAQSRTIEDSF----VKSNIPYTMV 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----- 462
                     I+D++A    + +  D++SF  ++  P        + K+           
Sbjct: 378 AGTKFYSRKEIRDVIAYLNVVANPADNMSFERIVNEPKRGVGPGALEKLRRFAESRNLYL 437

Query: 463 -TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
              +    +         +  ++      L   ++  +  +    +L      +      
Sbjct: 438 ADSSFDIMLSDIRGKVAGEIYNLAMAFDLLRTHSESSTITELVEEMLERTGYLKALQLMP 497

Query: 522 GNE---VIDVLDEFLNFTLRNEQNS-------------YSSLQELISELEQYPPTIKRAH 565
             E    I+ ++EFL+ T   ++ S              + L +L   L +     +   
Sbjct: 498 SIENQARIENIEEFLSVTKGFDEKSEVPLDEETGEPIIETGLDKLSRFLNEVSLLSETDA 557

Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                ++V +MT+H AKGLE P+VFL+     +F    +                     
Sbjct: 558 YEEESDQVTMMTLHAAKGLEFPIVFLIGMEENIFPLSRVN-------------------- 597

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                               EE  RL YVG+TRA + L +
Sbjct: 598 --------------EDIDELEEERRLAYVGITRAEETLYL 623


>gi|312900317|ref|ZP_07759628.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470]
 gi|311292505|gb|EFQ71061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470]
 gi|315170713|gb|EFU14730.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1342]
          Length = 791

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 70  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633


>gi|260424687|ref|ZP_05732964.2| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470]
 gi|260402848|gb|EEW96395.1| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470]
          Length = 746

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/548 (17%), Positives = 174/548 (31%), Gaps = 116/548 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++  K+N  LDF+DL+  T  LL        IR +     ++ILIDE QDT+ 
Sbjct: 180 ADVYDLYDKYMKQNNALDFDDLLFATTKLLADE----TIRRRWQDHFHYILIDEYQDTNH 235

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+ + + +              + + AVGD  QSIYS+ GA+ + ++  +         
Sbjct: 236 AQYLMAKYIAG----------KSQNICAVGDADQSIYSWRGADLRNIMDFREDYP----- 280

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II+L  ++RST  IL   + V                                L
Sbjct: 281 ---SAQIIKLEQNYRSTQTILNAANAVIKNNVERLEKR---------------------L 316

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W                   +  D   +       A  I          +++     +  
Sbjct: 317 W-------TENNPGVHLQKYAASDEHNE-------ADFIV---------ESMMKEHGENH 353

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +    + VL R    + +I            I+          D   I+D++A  + + +
Sbjct: 354 VPYGKMAVLYRMNAQSRVIEESM----VKRGIAYTMVGGTRFYDRAEIRDMLAYLKLVAN 409

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHV 484
             DD+S + ++  P     +  + K+     +         +            +K Q  
Sbjct: 410 FRDDISLMRIINVPRRGIGQTTMQKLSEFSKQGNMSMFEGIMSLEESDIPVPARTKLQKF 469

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
              I   ++ +           I+   +           +     + L E LN      Q
Sbjct: 470 SALIFSFLNASTEGDVFTLIQKIMTDTEYLSVLQQSSDPQAQSREENLGELLNVAKDFTQ 529

Query: 542 NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                   L   LE+              ++V +MT+H+AKGLE P+V++      +F  
Sbjct: 530 EQPEG--GLPEFLEKVALVNDVDSFEEQDDKVTLMTIHSAKGLEFPIVYMAGMDEGIFPG 587

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                             +   + ++  EE  RL YV +TRA +
Sbjct: 588 ----------------------------------VRSLMDETALEEERRLCYVAITRAKE 613

Query: 661 QLIICKHS 668
           +L +   +
Sbjct: 614 KLYLTTSA 621


>gi|307332408|ref|ZP_07611476.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu
           4113]
 gi|306881942|gb|EFN13060.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu
           4113]
          Length = 824

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 121/714 (16%), Positives = 227/714 (31%), Gaps = 133/714 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      VS  +      +   +  +         +       +  
Sbjct: 132 AAGEMKERVEELVGPRANAMWVSTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 186

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+S         P K    +  + K  +LK +L        +          F+ T   
Sbjct: 187 RLMSLVCRDLDLDP-KRFPPKSFSAKVSNLKNEL------IDEETFAGQATDGFEKT--- 236

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+D+I+ T +LL+       +     +   H+L+DE Q
Sbjct: 237 ---LAEAYAMYQARLREANALDFDDIIMTTVNLLQ---AFPDVAEHYRRRFRHVLVDEYQ 290

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L           ++   L  VGD  QSIY+F GA  + +L+ +     
Sbjct: 291 DTNHAQYTLVRELVG----TDTEETTAAELCVVGDADQSIYAFRGATIRNILQFEEDYPT 346

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I L  ++RST  IL+  + V    EN +  +                  
Sbjct: 347 --------ARTILLEQNYRSTQTILSAANAVIERNENRRPKN------------------ 380

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW       ++    +   + +  +           A+ +A  I  +          
Sbjct: 381 ---LW------TEAGAGTEITGYVADTEHDE--------AQFVADEIDRLTDAG------ 417

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +A D+ V  R    + +   +         +           +   ++D++A  R
Sbjct: 418 ---DAKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 470

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF--ANCGISKFQH 483
            + + ED +    +L  P     E     I      E  T  + +++   A    ++  +
Sbjct: 471 VLANPEDSVPLRRILNVPKRGIGERAEAMIDALALREKITFPQALRRVDDAYGMAARSAN 530

Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
            +K  + L+            P      +L       +  +    +    I+ L E    
Sbjct: 531 AVKRFNTLMEELHTIVESGAGPATVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 590

Query: 536 TLRNEQ----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            L  EQ     +  +L + + +  L      I    +     + +MT+HTAKGLE PVVF
Sbjct: 591 ALEFEQDRGEENPGTLADFLEQVALVADSDQIPDEDTDGSGVITLMTLHTAKGLEFPVVF 650

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L      VF H                                       +    EE  R
Sbjct: 651 LSGMEDGVFPHMRALG----------------------------------QTKELEEERR 676

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           L YVG+TRA ++L + + +  S   +         + +      R ++      
Sbjct: 677 LAYVGITRARERLYLTRSTMRSAWGQPAYNPPSRFLEEIPDQYVRWRRTGPATP 730


>gi|227517687|ref|ZP_03947736.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104]
 gi|229546558|ref|ZP_04435283.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322]
 gi|293385045|ref|ZP_06630879.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712]
 gi|293389316|ref|ZP_06633777.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613]
 gi|307272535|ref|ZP_07553788.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855]
 gi|307274690|ref|ZP_07555862.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134]
 gi|307296389|ref|ZP_07576213.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411]
 gi|312904260|ref|ZP_07763422.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635]
 gi|312906034|ref|ZP_07765047.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512]
 gi|312909380|ref|ZP_07768236.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516]
 gi|227074842|gb|EEI12805.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104]
 gi|229308303|gb|EEN74290.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322]
 gi|291077723|gb|EFE15087.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712]
 gi|291081338|gb|EFE18301.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613]
 gi|306496044|gb|EFM65629.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411]
 gi|306508619|gb|EFM77717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134]
 gi|306510820|gb|EFM79837.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855]
 gi|310628029|gb|EFQ11312.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512]
 gi|310632356|gb|EFQ15639.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635]
 gi|311290404|gb|EFQ68960.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516]
 gi|315025780|gb|EFT37712.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2137]
 gi|315029104|gb|EFT41036.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4000]
 gi|315031452|gb|EFT43384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0017]
 gi|315145224|gb|EFT89240.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2141]
 gi|315151577|gb|EFT95593.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0012]
 gi|315157733|gb|EFU01750.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0312]
 gi|315161923|gb|EFU05940.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0645]
 gi|315575349|gb|EFU87540.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309B]
 gi|315578806|gb|EFU90997.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0630]
 gi|315581379|gb|EFU93570.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309A]
          Length = 791

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 70  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633


>gi|327534311|gb|AEA93145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis OG1RF]
          Length = 791

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 70  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633


>gi|15604312|ref|NP_220828.1| DNA helicase II [Rickettsia prowazekii str. Madrid E]
 gi|6226298|sp|Q9ZD95|UVRD_RICPR RecName: Full=Probable DNA helicase II homolog
 gi|3861004|emb|CAA14904.1| DNA HELICASE II (uvrD) [Rickettsia prowazekii]
 gi|292572062|gb|ADE29977.1| DNA helicase II [Rickettsia prowazekii Rp22]
          Length = 658

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/559 (20%), Positives = 183/559 (32%), Gaps = 117/559 (20%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            L    +AK +   Y++    + VLDF DL++  N+L  K      +     ++  +ILI
Sbjct: 170 NLPLQKIAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNPA---VLKYYQEKYRYILI 226

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT++ Q+   R L   +          R +  VGD+ QSIY + GAE   +LR ++
Sbjct: 227 DEYQDTNIAQYLWARMLASLY----------RNICCVGDDDQSIYGWRGAEVGNILRFEK 276

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                        +II+L  ++RST  IL     V +  +N    +              
Sbjct: 277 DF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHSKT-------------- 314

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  LW       DS    + +  +   D           AR IA  I  ++  +  
Sbjct: 315 -------LW------TDSSSGEKIKIISCLSDKEE--------ARYIACEIDKLVKEER- 352

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                     A +I +LVR    T            +  I           + + I+D++
Sbjct: 353 --------YNAGNIAILVRAGFQTRSFEEAF----INSAIPYKIIGGLRFYERMEIRDVL 400

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN------ 475
           A  R  L+Q D+L+   ++  P        + KI         + +  I++         
Sbjct: 401 AYIRISLNQNDNLALERIINVPKRAIGAASLNKIRSYALERNISNFAAIKEILEIGNIKA 460

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
                 + ++  I          +P +    IL               E    I+ ++E 
Sbjct: 461 KSYESLKDLLTKIDNWYEQFIIDTPINVVKAILDDSGYLAMLKEEKTEEAFGRIENINEM 520

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           L           + + + I              +     V IMT+H AKGLE  VVFL  
Sbjct: 521 LRAIAEF-----NDIHDFIEYSSLVMENEVLETNYGG-SVTIMTLHAAKGLEFDVVFLPG 574

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF  +                                       +   EE  R+ Y
Sbjct: 575 WEEGVFPSQRSLD--------------------------------EDGEKGLEEERRIAY 602

Query: 653 VGMTRASDQLIICKHSNTS 671
           VG+TRA   L I    +  
Sbjct: 603 VGITRAKKDLYITHAESRK 621


>gi|262404930|ref|ZP_06081482.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586]
 gi|262348769|gb|EEY97910.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586]
          Length = 723

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/690 (16%), Positives = 219/690 (31%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++ T +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRTLELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +                + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARIENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TDGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N               ++ I+ L         H      +      + +    G 
Sbjct: 441 SIGLLNDQVLTGRAAGALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPQVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|145589895|ref|YP_001156492.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048301|gb|ABP34928.1| ATP-dependent DNA helicase UvrD [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 787

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 123/760 (16%), Positives = 241/760 (31%), Gaps = 136/760 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W +   QVS I              ++ +   +   +        
Sbjct: 36  GAGSGKTRVLTTRIAWLIQTGQVSPIGVLAVTFTNKAAKEMMVRLSAMLPINTRGMWIGT 95

Query: 66  FSLLSSFFL----TQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
           F  L +  L     +   P     + TQ+       L + LK   +++   + ++     
Sbjct: 96  FHGLCNRLLRAHHKEAGLPSTFQILDTQDQLSAIKRLLKGLKVDDEKYPPKQLQYFIAHA 155

Query: 120 FKSTLASLTLA---------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +    +  LA           L   Y+E  ++  V+DF +L++ + +LLK  +    IR
Sbjct: 156 KERGQRAKDLAVGDDFQAKMAQLYGAYDEQCQREGVVDFAELLLRSYELLKHSE---PIR 212

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT-LFAVGDEKQSIYSF 229
               +   HILIDE QDT+ +Q+  ++ L+       N      + +FAVGD+ QSIY+F
Sbjct: 213 THYQERFRHILIDEFQDTNALQYAWLKLLSGHDASRVNVSGMGTSAVFAVGDDDQSIYAF 272

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +   ++               ++L  ++RS   IL   + + +      G + 
Sbjct: 273 RGADVENMRLYEKQFHPLL---------VKLEQNYRSHGHILDTANHLIANNSERLGKNL 323

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                                      + D+        + +  D           A  +
Sbjct: 324 ---------------------------RTDAGHGEPVRIYDAPSDHAE--------AAWL 348

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I  ++ +           I+  +I +L R    + +I            I       
Sbjct: 349 VEEIKALVNSG----------IKRTEIALLYRSNAQSRIIEHNL----FSAAIPYRVYGG 394

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IK  +A  R + +  DD SF  ++  P        I  +    R +  ++Y 
Sbjct: 395 LRFFERAEIKHALAYLRLLENPNDDTSFSRVVNFPTRGIGARSIEALQDAARAQQCSLYS 454

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVID 527
                     +     I+ +  +    +  +  +    ++      Q ++  R G + ++
Sbjct: 455 AASSLEGKAGATLGGFIRLVDHMREATRHNTLPETVEFVIQHSGLIQHYLSEREGQDRVE 514

Query: 528 VLDEFLNFTLRNEQNSYSSLQE------------------LISELEQYPPTI-KRAHSAN 568
            L E +N                                 L + L             A 
Sbjct: 515 NLQELINAATAFIAEEGYGQDAAAAMLPGENAPGVVEVSPLAAFLSHASLEAGDNQAQAG 574

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V++MTVH+AKGLE   VF+      +F H++                          
Sbjct: 575 QDAVQLMTVHSAKGLEFTAVFITGLEEGLFPHENSIN----------------------- 611

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                      ++   EE  RL+YV +TRA ++L +      +  +  + +  Y+M    
Sbjct: 612 -----------EQDGLEEERRLMYVAITRAKERLYLSH----TQSRMLHGQVRYNMPSRF 656

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                      LT       W     S    ++    + E
Sbjct: 657 LEELPSDSLKWLTPKAKDARWGGNSRSGSTWQDGYTRQRE 696


>gi|184200505|ref|YP_001854712.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201]
 gi|183580735|dbj|BAG29206.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201]
          Length = 1145

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 139/1081 (12%), Positives = 274/1081 (25%), Gaps = 223/1081 (20%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R G+  +          W L    V   +  +  ++   N       +   +AS+     
Sbjct: 139  RLGIESDTVLLG-QAQAWQLASELVRGWDGPLPEAVPAVNTLTGGVIKLSSEASEHLVEA 197

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             R       F   +   Q             D+   L +                  + T
Sbjct: 198  HRIREFVQRF---RLACQDVPPDGRKRTPGKDVVSALSRM-----------------EQT 237

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 L       +   K++   LD+ DL+     +++    +  +          +L+D
Sbjct: 238  DVLAQLV----ERFHAVKRQESALDYGDLLSLAARIVRVDPHARTV---ERDRFKVVLLD 290

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS  Q  +   L  D             + AVGD +QSIY F GA   ++      
Sbjct: 291  EFQDTSHAQLALFSGLYGD----------GHCVMAVGDPQQSIYGFRGASSGQLFSFVEN 340

Query: 244  NQKRATNAGQK-FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              +R  + G +  +   L  ++R++  +L V + V                 +R   +  
Sbjct: 341  FPRRTADGGSEYAATSFLTTAWRNSLSVLDVANAV--------------AAPLRTAPAWS 386

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                TV++     +    +   +   + +  +           AR  A  I         
Sbjct: 387  RSAATVEVPPLDPAPGAVRGRVRVSRYATDTEE----------ARATAQLIHEQRAAHEG 436

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                +        + VL R+R     +      L     I         L     + D++
Sbjct: 437  QPLAEM-----PTMAVLCRRRAQFEPLRLELEAL----DIPYEVVGLGGLLHTPEVSDVV 487

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-- 480
            A+   +       +   +L    +     D+  +     E E  +E   +          
Sbjct: 488  AMLHVLTDPGRSDALARLLAGARWRLGARDLAALGDWAAELERRHESAARGEQDTRPDDV 547

Query: 481  -------------------------------FQHVIKYIHELIHIAQFC---------SP 500
                                               ++ +  L                + 
Sbjct: 548  VMADAVDGSSLVEALETLPRDGWVSSRGRSISPEGMRRLRALREDVVALREVLGDELTTV 607

Query: 501  HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPP 559
                  +LG                   LD F +  ++         +   ++ LE    
Sbjct: 608  IHEVEAVLGLDIELAALPGEDPATARRNLDAFTDQAVQFSATTRTHDVAAFLAWLETASR 667

Query: 560  TIK----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIM 609
                         H+ V+++TVH +KGLE   V +       F   +             
Sbjct: 668  EENGLDLPPAHTRHDAVQLLTVHASKGLEWDHVHVPGLNQGDFPSTNSSAWTGEAAKLPW 727

Query: 610  PSLNDDPGIPIWIPQSKSR---NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            P   D   +P W P+            +  + + +    E  RL YV  TRA   L +  
Sbjct: 728  PLRGDASQLPEWSPRVDDVRELEASFGEFAEDVAEHDLGEERRLAYVAFTRAKTLLELSG 787

Query: 667  HSNTSNEKKSNQRTWY--------DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                   KK  + + +        +     F         +L  +   D  ++  W    
Sbjct: 788  SVYRGTGKKPKEVSPFLREARDMAESATPGFEAGPWADPGELEGNPQLDTRVSALWPYDP 847

Query: 719  PE--------------------------------------------------NTPLEREE 728
             E                                                  +  L   E
Sbjct: 848  LEGPVITRTSRDADGTLSETVLPPAHEGRRARAEAAAQAVRNGGFPHLADVPDEELAAGE 907

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------------KTNLESLLS 775
               ++   +   + L +   +      +  PS +                          
Sbjct: 908  AGARVRRWRHEAELLLARRSDPERPRTVHMPSHVSASALVSMDSDPEGFVSTLRRPMPRR 967

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
                   G   H  ++  +                    L    E       +   L+ P
Sbjct: 968  PGSAARAGTAFHTWVENFYGDSA----------------LLDPDELPGADDHVDEDLDLP 1011

Query: 836  MMTTAMSCDSYSE---VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
             +        ++E    +V   +  P   + + GRID +  +     + ++KT      E
Sbjct: 1012 RLAETFRASPWAERQPYAVELPVETPVGSLTVRGRIDAVFRTADGWELVDWKTGRVPHGE 1071

Query: 893  IEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                      QL++Y       +  P +S+     YV+  +V         +    I + 
Sbjct: 1072 DLRRKS---GQLALYRLAFARLHGIPLESVSAAFYYVASDRVVRPLDLADEQQLEGIVSS 1128

Query: 951  I 951
            +
Sbjct: 1129 L 1129


>gi|119899502|ref|YP_934715.1| DNA helicase II [Azoarcus sp. BH72]
 gi|119671915|emb|CAL95829.1| DNA helicase II [Azoarcus sp. BH72]
          Length = 739

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 115/757 (15%), Positives = 234/757 (30%), Gaps = 125/757 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W +   Q S                +  +   +   +        
Sbjct: 28  GAGSGKTRVLTTRIAWLVQSGQASPAEILAVTFTNKAAKEMHARLAAMLPINTRSMWIGT 87

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F  L +  L             + + + +       L + L         ++ Q      
Sbjct: 88  FHGLCNRLLRAHHRDAGLPQLFQILDSGDQLAAIKRLLKTLNVDDEKFPPRELQHFINGQ 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           ++        ++          L   YE   ++  V+DF +L++ T +LL++ +    IR
Sbjct: 148 KEAGFRPHAVEAWDEFTRQRVQLYQEYEAQCQRESVVDFAELLLRTYELLERNE---PIR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               +   HIL+DE QDT+++Q+  ++ L ++            +LF VGD+ QSIY F 
Sbjct: 205 RHYQRRFRHILVDEFQDTNVLQYRWLKLLADE------GREGGASLFCVGDDDQSIYRFR 258

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GAE   +   +R  + +        ++I L  ++RS  +IL   + +     +  G +  
Sbjct: 259 GAEVGNMRDFEREFRVQ--------NVIRLEQNYRSRGNILDAANAIIRNNSDRLGKN-- 308

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW       D         + ++ D+          AR + 
Sbjct: 309 -------------------LW------TDQGAGEPIRVFEAFSDADE--------ARWLV 335

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +  ++    +            +I +L R    + ++            +        
Sbjct: 336 DEVRGLVRDGALR----------SEIALLYRSNAQSRVLEHQL----FTAGVPYRVYGGL 381

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469
              +   IK  +A  R I + +DD +F  ++  P        +  +    R    ++Y  
Sbjct: 382 RFFERQEIKHALAYLRLIANPDDDTAFARVVNFPTRGIGARSLEALQDAARTYNTSLYAT 441

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528
           +   +    +     ++ + +L          +    +L A   R  + S   G E ++ 
Sbjct: 442 VPHLSGKAGTVLAQFVRLVEDLRRDTARLPLPELIDHVLDASGLRAHYKSEKEGQERLEN 501

Query: 529 LDEFLNFTLRNEQNSYSSLQ-------ELISELEQYPPTI-KRAHSANHNEVRIMTVHTA 580
           LDE L         + +  +        L   L                + V++MTVH+A
Sbjct: 502 LDELLGAGSNFVAEAQADAEVLAGDHALLADFLAHASLEAGDHQADQGADAVQLMTVHSA 561

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE  VVF+      +F H++                                    L+
Sbjct: 562 KGLEFNVVFVSGLEEGLFPHENS----------------------------------ILE 587

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
               EE  RL+YV +TRA ++L +    +     ++        + +      +      
Sbjct: 588 AEGLEEERRLMYVAVTRARERLYLSFAQSRMLHGQTRYNLRSRFLEEIPAGLVKWLTPPN 647

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
             S+              P  +         +     
Sbjct: 648 PRSMAGGALAGMGGGYFKPGASVAPVAARQARGTSAH 684


>gi|42525604|ref|NP_970702.1| ATP-dependent DNA helicase UvrD [Treponema denticola ATCC 35405]
 gi|41815615|gb|AAS10583.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola ATCC
            35405]
          Length = 1139

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 154/956 (16%), Positives = 292/956 (30%), Gaps = 114/956 (11%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + + + S      E     +   L               N    ++KEKLK   ++ I I
Sbjct: 225  EAISEFSTLPHFPESIKDEAFIKLLPIVDKISKTAKGRGNDAVKEIKEKLKIIYEKLICI 284

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
               +N         +   +   L   Y   KK+  +L F D+     D+L        +R
Sbjct: 285  ---YNFDYSRDFLASFFDMLNELQKEYIYEKKQRGLLTFSDVSQLAVDVLINDID---LR 338

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL-----FAVGDEKQS 225
                +  + I+IDE QD + +Q +++  + E F   +     P  L     F VGDEKQS
Sbjct: 339  NFYKKNADIIMIDEFQDNNSLQRDLLFLIAEKFERSEKFVPGPHELCPNKLFFVGDEKQS 398

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY+F GA+     +       +     ++ +   L +++R+   ++ + + +FS     +
Sbjct: 399  IYAFRGADVSVFRKLADDISDK-----ERLAATRLLINYRTEPTLINLFNTIFS-----K 448

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT-----SYFDSLPQES 340
                +    +                E        +   +   +      +  DS    S
Sbjct: 449  VFYSEVNKPLEKNGFVPAYEAEYVPTETRAPVKGIEPKIEIMFFDKKRFNALEDSSRFLS 508

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A  +A  I  +        +GK  R     D  VL+R          + R    +
Sbjct: 509  PVEAEAFYLAKRILELRNQGFKIRDGKSARACSWSDFAVLLRASTKQSTYERVFR----N 564

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED--DIFKIC 457
            + I      +  L +   I D+ A+ + I    D  ++  +L SP  N  +D   +  + 
Sbjct: 565  FGIPYRSVQQRGLFNDAPINDIYAMLKIIAYPSDKKTYAQVLHSPFVNIDDDAFAVLLLN 624

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHE-LIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +    ++ E + +       +   +   +++ ++ ++   S    +            
Sbjct: 625  FTKAFDISLAEKLNEKNKDAYLRACDLFARLNKNILTMSCAESVTYLWYEEAYRYFLLSN 684

Query: 517  FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRI 574
              +    ++ D L E       N       +  L S +E       ++       + V+ 
Sbjct: 685  EENHHYMDLYDYLFELACQADINGLTFSQFVDLLSSHIEDNERLDDMELPLDDQKDSVQF 744

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP-QSKSRNNIVS 633
            +TVH +KGLE P+V + D G++    K    +     +      P      +K+ N I  
Sbjct: 745  LTVHKSKGLEFPIVIVPDCGNRGIPEKKEGLVFYNEDMGPVLYSPKAPGLPAKAGNLIFE 804

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN------------QRTW 681
             L          E  RLLYV  TRA   LII    N    + S               + 
Sbjct: 805  SLRDEANAKLVAETKRLLYVAATRAESYLIISGVYNHLQNEDSKDSKKDVTKDNDCSSSD 864

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK---------- 731
               + +     +   K      +               E  P ER++             
Sbjct: 865  SRSLEEIKSMLKLSDKTISFFELLLPALPDKHEDIIFTEILPTERKKLFNNLKTQKHEKV 924

Query: 732  --------------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                           L +++       +   N  +    L   T +     +        
Sbjct: 925  NFEKLFASSKVKEFNLAEKRITTATSLAHEVNKKSREGYLYSLTSEKDKLPDSFEDKDGQ 984

Query: 778  ---QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA---KLWPAKEYKNLLLSITRL 831
                    G + H L++                   K     K     E K +       
Sbjct: 985  KEFTAAELGTLTHSLIE--------------ARLLNKEFIYPKGHSEVERKKIYAWADNF 1030

Query: 832  LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
              + M   A   +               +  I+SG+ID +      +++ +YKT      
Sbjct: 1031 FNSDMYVLAKEAEQLKS---EYGFLTDYEGQIVSGQIDLLFKKSGIVYVVDYKTD----- 1082

Query: 892  EIEHIPYTHIAQLSIYEKILKDSYP----------NKS--LVCLLIYVSEPKVFII 935
                 P +H+ QL IY+K   D             +K   +   + Y+       +
Sbjct: 1083 -EIENPDSHLTQLKIYKKAASDLAKTESENLKENTDKPIEVKTFIFYLKTGHCVEL 1137


>gi|240850877|ref|YP_002972277.1| DNA helicase II [Bartonella grahamii as4aup]
 gi|240268000|gb|ACS51588.1| DNA helicase II [Bartonella grahamii as4aup]
          Length = 779

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/550 (19%), Positives = 184/550 (33%), Gaps = 108/550 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + L   Y+   K     DF DL++++  + +       I  +   +  +IL+DE QDT
Sbjct: 208 MGRELYHSYQNRLKDLNACDFGDLLLHSISIFQHNPD---ILREYHSQFRYILVDEYQDT 264

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+  +R L +              L  VGD+ QSIY + GA+ + +LR ++      
Sbjct: 265 NTAQYLWLRLLAQHP------QGQHVNLCCVGDDDQSIYGWRGAKVENILRFEKDFP--- 315

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   II L  ++RST+ IL     + +  E   G    S                 
Sbjct: 316 -----SAKIIRLERNYRSTSHILKTASHLIAHNEERLGKVLFSAQI-------------- 356

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                       +   ++    S +DS  +       AR I   I     T    ++   
Sbjct: 357 ------------KSEEEKVKIHSAWDSQEE-------ARAIGEEIEQAHQTGHALNH--- 394

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  + +LVR              L     ++          + + I+D MA  R +
Sbjct: 395 -------MAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDAMAYLRVV 443

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKF 481
           +   DDL+F  ++ +P     +  +  +    R     ++          +      S  
Sbjct: 444 VQPADDLAFERVINTPKRGIGDATLRILYESARARAVPLFSAAADIIETDELKPKARSAL 503

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           + +I+      ++ Q     +   +IL        ++     E    L+         EQ
Sbjct: 504 RSLIENFRRWQNMLQDTPHKELAEIILDDSGYTTMWLEDRSPEAPTRLENLKEMIRSMEQ 563

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 + L S LE     +   ++ N + V IMT+H+AKGLE   VFL      +F H+
Sbjct: 564 -----FENLQSFLEHVALVMDAENNENTDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 618

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +S  EE  RL YVG+TRA   
Sbjct: 619 RSLD--------------------------------EGGRSGLEEERRLAYVGLTRAKKH 646

Query: 662 LIICKHSNTS 671
           L I   SN  
Sbjct: 647 LHIWFVSNRR 656


>gi|332039917|gb|EGI76310.1| uvrd/rep helicase [Hylemonella gracilis ATCC 19624]
          Length = 1133

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 145/901 (16%), Positives = 297/901 (32%), Gaps = 73/901 (8%)

Query: 43   NPTILKKAQTLQQAS-QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK 101
            N T    AQ ++QA  Q    ++R + L       +       + +          ++ +
Sbjct: 278  NKTPQTAAQAIEQAFTQQADADQRLAALRKAVFVAEADRLTQHLKK------YPAAQQAE 331

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                  ++ + +   +   +     + LA+ L   Y   K++   +D  D+      LL+
Sbjct: 332  AELQPLLQAQQQHEAWVHQQR---MIRLARILLEEYAALKRERGWVDMSDVERAALHLLE 388

Query: 162  KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL---TEDFFVGKNTHSSPRTLFA 218
            + ++SAW++ ++D    H+LIDE QDT+ +QW+ + +          G +       LF 
Sbjct: 389  RSELSAWLQQRLDARTRHLLIDEFQDTNPLQWQALHAWLSSYAGVGGGASGAGGAPRLFI 448

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            VGD KQSIY F  AEP+     +   Q    +       +    + R+   +L  V+ V 
Sbjct: 449  VGDPKQSIYRFRRAEPQIFRAAQSFVQALGGDL------LACDHTRRNAPAVLARVNAVL 502

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
               ++          T     S       V    +  ++   +               P+
Sbjct: 503  GEAQSQGEYEGFRAHTTE---STQAGQAWVLPPIERQARDKKEAATVWRDSLLAPRLTPE 559

Query: 339  ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            ++  +   R+ A  I+  I             +  K+++VL RKR     +      L  
Sbjct: 560  DTLRARECRQAARWIAQRIEAG----------LPPKEVMVLARKRDRLVAMQAELLAL-- 607

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL----FNFSEDDIF 454
               +     ++  L     ++DL AL   ++S   DLS   +L+SPL        +  + 
Sbjct: 608  --GVPATQPEQADLGAAPEVQDLTALLDVLVSPGHDLSLARVLRSPLLGPHLGLDDTALL 665

Query: 455  KICTQRHETETVY---EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
            +I  ++   +  +         A    +  + V   +       +   PHD    I    
Sbjct: 666  EIAARQRGGKQAWFDLLQTTPPAAWAHADLREVGPRLQRWQQWVRTLPPHDALDAIYADG 725

Query: 512  KGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                ++ +         V   L   L   L+ +   Y++   L+  L             
Sbjct: 726  DVVARYAAAAPPHLRARVQTHLQALLEAALQFDGGRYATPYALVRALRAGRLPAPAQPMP 785

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
                VR++TVH AKGLE+  V ++DT +     + +  +   P     P   +++   K 
Sbjct: 786  EGGAVRLLTVHGAKGLEAETVLILDTDTPPQRAQTMSVLLDWPGEASAPRSFVFLASEKE 845

Query: 628  R--NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                    +     + +   E   +LYV +TRA  QL+         +    +  W  ++
Sbjct: 846  ERLPPSAREAHARERAARGREELNMLYVALTRARAQLVFSAVQ-PHQQNTEGKSWWQRLL 904

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
            ++    +    +         +               P + E  +        I  ++  
Sbjct: 905  HECQPWEPTPPQSPADGVARFEGMGRVSDMDGREAGAPTQHEPAVAAPAASSAIVLRVLP 964

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
             I+       +L PS+ +                   G  +H+LL+             +
Sbjct: 965  DIRYQPVP--VLAPSSEEDAL------------AARIGSAMHRLLEWTALDTAEFSPAQL 1010

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
                 +        + +       R++ +            +  S    +    +     
Sbjct: 1011 ERAGAEQG--LTPAQARQAADMARRIV-HGAGAWVWRGADVAWWSNEVPVTIEGQAR--- 1064

Query: 866  GRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
             RID++        ++ +YK+     Q  E      +AQL  Y   ++ +   + +   L
Sbjct: 1065 -RIDRLVRHRDGTWWVLDYKS-ASYAQAAEVTRAQMLAQLRAYGDAVRAACAGEPVRIAL 1122

Query: 925  I 925
            +
Sbjct: 1123 L 1123


>gi|302558895|ref|ZP_07311237.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000]
 gi|302476513|gb|EFL39606.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000]
          Length = 825

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 121/755 (16%), Positives = 231/755 (30%), Gaps = 133/755 (17%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 183

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + K  +LK +L   +D              F+ T   
Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEED------FAAQAADGFEKT--- 233

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 234 ---LAQAYALYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHS----SPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DT+  Q+ ++R L        +        P  L  VGD  QSIY+F GA  + +L+ + 
Sbjct: 288 DTNHAQYSLVRELVGTVEHPVDVPPEAEVPPAELCVVGDADQSIYAFRGATIRNILQFEE 347

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                        + I L  ++RST  IL+  + V    E+ +  +              
Sbjct: 348 DYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN-------------- 385

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  LW        +  +  + +         +       A+ +A  I  +      
Sbjct: 386 -------LW-------TNAGSGARITGYVADTEHDE-------AQFVADEIDRLTDAGE- 423

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    +A D+ V  R    + +   +         +           +   ++D++
Sbjct: 424 --------AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVL 471

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKF 481
           A  R + + ED +    +L  P     +     I    + E  +  + +++         
Sbjct: 472 AYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALAQREKISFPQALKRVDEAYGMAA 531

Query: 482 Q------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
           +           + EL  + +  + P      IL       +  +    +    I+ L E
Sbjct: 532 RSSNAVKRFNTLMEELRTVVESGAGPATVLEAILERTGYLAELQASTDPQDETRIENLQE 591

Query: 532 FLNFTLRNEQNSYSS----LQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
                L  EQ         L + + +  L      I          + +MT+HTAKGLE 
Sbjct: 592 LAAVALEFEQERGEGESVALSDFLEQVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEF 651

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVFL      VF H                                       +    E
Sbjct: 652 PVVFLTGMEDGVFPHMRALG----------------------------------QTKELE 677

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YVG+TRA ++L + + +  S   + +       + +        K+   +  ++
Sbjct: 678 EERRLAYVGITRARERLYLTRSTLRSAWGQPSYNPPSRFLEEIPAAHLEWKRTGASGPVS 737

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                    S     +       +        + P
Sbjct: 738 SGRASGVAASLSSSRSRSSAAGASGFATRRTAENP 772


>gi|328884521|emb|CCA57760.1| ATP-dependent DNA helicase UvrD or PcrA [Streptomyces venezuelae
           ATCC 10712]
          Length = 816

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 121/708 (17%), Positives = 218/708 (30%), Gaps = 132/708 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 132 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 186

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+S         P+K    +  + K  +LK +L        +          F+ T   
Sbjct: 187 RLMSLVCRDLDLDPKK-FPPKSFSAKISNLKNEL------IDEESFADQAVDGFEKT--- 236

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   ++   LDF+D+I+ T  LL+       +     +   H+L+DE Q
Sbjct: 237 ---LAEAYRMYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 290

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L    +        P  L  VGD  QSIY+F GA  + +L+ +     
Sbjct: 291 DTNHAQYTLVRELVGTGYEDLG----PAELCVVGDADQSIYAFRGATIRNILQFEEDYP- 345

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    + I L  ++RST  IL+  + V    E+ +  +                  
Sbjct: 346 -------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------------ 380

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW        +     Q +         +       A+ +A  I  +          
Sbjct: 381 ---LW-------TNAGAGSQITGYVADTEHDE-------AQFVADEIDRLTDAGE----- 418

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +A D+ V  R    + +   +         +           +   ++D++A  R
Sbjct: 419 ----AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 470

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--- 482
            + + ED++    +L  P     E     I      E  T  + +++         +   
Sbjct: 471 VLANPEDNVPLRRILNVPKRGIGERAEAMIDALSLREKITFPQALKRVDEAYGMAARSAN 530

Query: 483 ---HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                   + EL  + +  + P      +L       +  +    +    I+ L E    
Sbjct: 531 AVKRFNALMDELRTVVESGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 590

Query: 536 TLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            L  EQ        L   LE          I          + +MT+HTAKGLE PVVFL
Sbjct: 591 ALEFEQERGEEPATLAEFLEKVALVADSDQIPDEDEEGRGVITLMTLHTAKGLEFPVVFL 650

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 VF H                                       +    EE  RL
Sbjct: 651 TGMEDGVFPHMRALG----------------------------------QAKELEEERRL 676

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
            YVG+TRA ++L + + S  S   + +       + +        K+ 
Sbjct: 677 AYVGITRARERLYLTRSSMRSAWGQPSYNPASRFLEEIPPAYLEWKRT 724


>gi|325281708|ref|YP_004254250.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
 gi|324313517|gb|ADY34070.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
          Length = 756

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/582 (17%), Positives = 190/582 (32%), Gaps = 118/582 (20%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           + + T     L   +   Y++  K++  +DF+DL++ TN L +       I  K  Q+ N
Sbjct: 163 LSEDTAGKRPLLGEIYKQYQQRCKQSDTMDFDDLLLQTNILFRDFPD---ILAKYQQKFN 219

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           +IL+DE QDT+  Q+ +++ L++              +  VGD+ QSIYSF GA  + +L
Sbjct: 220 YILVDEYQDTNYAQYLIVKKLSD----------RHHNICVVGDDAQSIYSFRGARIENIL 269

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             K    +          + +L  ++RST  I+   + V S  +        S       
Sbjct: 270 NFKNDYPEY--------KLYKLEQNYRSTTTIVDAANCVISKNKEQIPKKTFSQ------ 315

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                ++   + +   +  D             ++   I  +  
Sbjct: 316 ---------------------NEEGEKIKVLRALSDKEEGF--------QVTNEIFRL-- 344

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                        +  D  +L R    + ++    R       I               I
Sbjct: 345 -------ANYEQQEYSDFAILYRTNAQSRILEEALR----KRNIPYKIYGGQSFYQRKEI 393

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN-- 475
           KDL+A  R  ++Q D+ +F  ++  P     +  + KI     +   +++  +       
Sbjct: 394 KDLLAYFRLTVNQNDEEAFKRIINYPRRGIGDSTVDKIREIAGKYHVSLWTVLCNLDKVA 453

Query: 476 -----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VID 527
                  +SK Q     I          + +D   +I  +        +    E     +
Sbjct: 454 GAFNSGTLSKLQKFGSLIERFREQIANENAYDAAVIIARSSGIIDDLSNDETPEGVSRKE 513

Query: 528 VLDEFLNFTLRNEQNSYSSLQE--LISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGL 583
            + E LN      + +Y   ++  L + LE              + N+V +MT+H +KGL
Sbjct: 514 NIQELLNGIKDFSETAYKEGKDDKLPAFLEGVALLTDQDGDKEGDQNKVTLMTIHASKGL 573

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   VF+     ++F  +                                        + 
Sbjct: 574 EFSNVFITGLEEELFPAQQCVTTP----------------------------------AA 599

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            EE  RL YV +TRA  +  +   ++     +         +
Sbjct: 600 LEEERRLFYVALTRAEKRAFMSFATSRYKNGQVVSSRPSRFI 641


>gi|294630996|ref|ZP_06709556.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14]
 gi|292834329|gb|EFF92678.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14]
          Length = 841

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 121/755 (16%), Positives = 230/755 (30%), Gaps = 133/755 (17%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P      V   +      +   +  +         +       +  
Sbjct: 144 AAGEMKERVEHLVGPRANAMWVMTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 198

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + K  +LK +L   +D               ++T   
Sbjct: 199 RLMALVCRDLDLDP-KRYPPKSFSAKISNLKNELIDEEDF------------AAQATDGF 245

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 246 EKTLAQAYALYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 302

Query: 187 DTSLIQWEVIRSLTEDFFVGKN-----THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           DT+  Q+ ++R L        +         P  L  VGD  QSIY+F GA  + +L+ +
Sbjct: 303 DTNHAQYALVRELVGTAEHPVDVPPSEADVPPAELCVVGDADQSIYAFRGATIRNILQFE 362

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         + I L  ++RST  IL+  + V    E+ +  +             
Sbjct: 363 EDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------- 401

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW        +     + +         +       A+ +A  I  +     
Sbjct: 402 --------LW-------TNAGAGARITGYVADTEHDE-------AQFVADEIDRLTDAGE 439

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                     +A D+ V  R    + +   +         +           +   ++D+
Sbjct: 440 ---------AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDV 486

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480
           +A  R + + ED +    +L  P     E     +    + E  +  + +++        
Sbjct: 487 LAYLRVLANPEDSVPLRRILNVPKRGIGERAEAMVDALAQREKISFPQALRRVDEAYGMA 546

Query: 481 FQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
            +           + EL  I +  + P      +L       +  S    +    I+ L 
Sbjct: 547 ARSANAVKRFNTLMEELRTIVESGAGPATILEAVLERTGYLAELQSSTDPQDETRIENLQ 606

Query: 531 EFLNFTLRNEQNSYSS----LQELISELEQYPPTIKRAHSANHNEV-RIMTVHTAKGLES 585
           E     L  EQ         L E + ++     + +     + + V  +MT+HTAKGLE 
Sbjct: 607 ELAAVALEFEQERGEGEPVALSEFLEQVALVADSDQIPDEEDGDGVITLMTLHTAKGLEF 666

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVFL      VF H                                       +    E
Sbjct: 667 PVVFLTGMEDGVFPHMRALG----------------------------------QVKELE 692

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YVG+TRA ++L + + +  S   + +       + +        K+   + +  
Sbjct: 693 EERRLAYVGITRARERLYLTRSAMRSAWGQPSYNPPSRFLEEIPQTHVDWKRTGGSVAAP 752

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                    S     +       +          P
Sbjct: 753 SGPASGVAASLSSSRSRSSASGASGFATRRTPDKP 787


>gi|147678864|ref|YP_001213079.1| superfamily I DNA/RNA helicase [Pelotomaculum thermopropionicum SI]
 gi|146274961|dbj|BAF60710.1| superfamily I DNA and RNA helicases [Pelotomaculum
           thermopropionicum SI]
          Length = 710

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 113/679 (16%), Positives = 213/679 (31%), Gaps = 140/679 (20%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           K A  +++       E    L    F     +    Q++   ++ N    D  ++L   +
Sbjct: 62  KAAGEMRERVGALVPETARDLWICTFHAACLRILRRQESFYGRDRNFVIYDADDQLTVLK 121

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTL---------------------AKYLNAHYEEAKKK 143
           D   +++     +       A                            + + Y++   K
Sbjct: 122 DCIKELKLDDKKHPPRAVAAAISQAKNMLMGPGEYERHAYDQFSQAVSEVYSLYQDRLVK 181

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  +DF+DLI  T  L ++      +         HIL+DE QDT+  Q+ ++  L    
Sbjct: 182 NNAVDFDDLIFLTVRLFREYP---QVLAYYQNRFRHILVDEYQDTNHAQYVLVNLLAA-- 236

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                   + R L  VGD  Q IY + GA+ + +L  +R   +          ++ L  +
Sbjct: 237 --------AHRNLCVVGDPDQGIYGWRGADIRNILSFERDYPE--------AKVVRLEQN 280

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   + +       +     +                             +  
Sbjct: 281 YRSTGFILEAANHIIRNNAGRREKRLWTAA--------------------------GRGF 314

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
           P    + +              A  +A  I  +          +      +D  VL R  
Sbjct: 315 PVIVHYAA---------DEHAEADFVAGRILRL---------KELEKRPYRDFAVLYRTH 356

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + +I  +         I           +   IKD++A  R +L+  D LS   ++  
Sbjct: 357 AQSRVIEEVF----VRAGIPYAIIGGLKFYERKEIKDMLAYLRLVLNPNDGLSLARIINV 412

Query: 444 PLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHIAQ 496
           P     E  + KI    R    ++ E +++ A          ++   +   + +L   + 
Sbjct: 413 PRRGIGEASLQKIAVFAREGGISLVEALERAAEIAGLTAAAKARSAALGALLRDLAERSS 472

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-QNSYSSLQELIS 552
           + S  +    ++     RQ+ ++    E     + LDEFL+ T   + Q     L+  + 
Sbjct: 473 YSSVTELAREVMEKTGYRQELLAENTVEARTRLENLDEFLSVTGEFDRQAEEKGLRSFLE 532

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            +               ++V +MT+H+AKGLE PVVFL      VF H            
Sbjct: 533 NVALVTDLDYYD--EGADQVALMTLHSAKGLEFPVVFLTGMEEGVFPHSRSLPEPGELEE 590

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                                L YVG+TRA ++L +    + + 
Sbjct: 591 ERR----------------------------------LCYVGVTRARERLYLTHCWSRNL 616

Query: 673 EKKSNQRTWYDMVYDSFHN 691
                       + +   +
Sbjct: 617 YGAQRCNMPSRFLEEIPPH 635


>gi|240172870|ref|ZP_04751529.1| putative ATP dependent dna helicase [Mycobacterium kansasii ATCC
           12478]
          Length = 768

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 107/656 (16%), Positives = 191/656 (29%), Gaps = 125/656 (19%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L   +   ++E I          +   +         + A Y+   +    LDF+DLI  
Sbjct: 152 LANAISNLKNELID--PHRALAHLTDDSDDLARTVASVYAEYQRRLRAANALDFDDLIGE 209

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
           T  +L+       I     +   H+L+DE QDT+  Q+ ++R L             P  
Sbjct: 210 TVAVLQTFPD---IAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDTE---DDVPPAE 263

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD  QSIY+F GA  + +   +R             + I L  ++RST +IL+  +
Sbjct: 264 LCVVGDADQSIYAFRGATIRNIEDFERDYP--------DATTILLEQNYRSTQNILSAAN 315

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            V +     +                        LW             +        + 
Sbjct: 316 SVIARNAGRREKR---------------------LW-------TDAGEGELIVGYVADNE 347

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +       AR +A  I  +              I   D+ V  R    +  +  +   
Sbjct: 348 HDE-------ARFVAEEIDALAERGE---------ITYNDVAVFYRTNNSSRSLEEVF-- 389

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 I           +   I+D++A  R + +  D +S   +L +P     +     
Sbjct: 390 --IRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSMRRILNTPRRGIGDRAEAC 447

Query: 456 ICTQRHETETVYEYIQKFA---------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
           +      T + +    + A                   ++ +  L          +    
Sbjct: 448 VAVYAENTGSSFADALQAAAEGKVPMLNTRAEKAIAGFVEILDGLRGRL-DDDLGELVEA 506

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------------EQNSYSSLQELI 551
           +L     R++  S    +    +D L+E ++                 +         L 
Sbjct: 507 VLERTGYRRELESSTDPQELARLDNLNELVSVAHEFSADQANTAALEPDNEDVPDTGVLA 566

Query: 552 SELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           + LE+            H    V +MT+HTAKGLE PVVF+      +F H         
Sbjct: 567 AFLERVSLIADSDEIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDDPT- 625

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                               E  RL YVG+TRA  +L + +   
Sbjct: 626 ---------------------------------ELSEERRLAYVGITRARQRLYVSRAMV 652

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
            S+  +         + +        ++     S +     A  +       T   
Sbjct: 653 RSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGAPRSAPTRSA 708


>gi|327473788|gb|EGF19206.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK408]
          Length = 762

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/590 (16%), Positives = 185/590 (31%), Gaps = 119/590 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVDKIRNFAASQEISLLDASANILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L          +    +L          ++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMLLDLRERLDDYKVTELVEAVLEKTGYAASLAAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            ++     +  S L +L   L +              +EV +MT+H AKGLE PVVFLV 
Sbjct: 516 FDESPDNPSDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF      +                                              Y
Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           VG+TRA   L +   ++     K+N       + +   +    + +    
Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLIEISSDLLDYQGLARPA 651


>gi|261379427|ref|ZP_05984000.1| DNA helicase II [Neisseria subflava NJ9703]
 gi|284797877|gb|EFC53224.1| DNA helicase II [Neisseria subflava NJ9703]
          Length = 735

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 196/583 (33%), Gaps = 120/583 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++  ++  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +  +             +FAVG
Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A+ I      +                  +I VL R    + +I           
Sbjct: 333 -----AQFIVDETKALEREGWNLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ- 459
            I           +   IK  +A  R  ++ +DD + + ++  P        I  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTIENLQTAS 433

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
             +  T+++     A    +K    ++ I  L +        +    IL      + + +
Sbjct: 434 NEQGITLWQAACN-AGAKATKIVAFVRLIEALRNQVGQLPLSEIIVGILKDSGLTEHYRT 492

Query: 520 RFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAH 565
           + G   + +D LDE +N  +    E +++ +L E         +++ L        +   
Sbjct: 493 QKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQA 552

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            A    V++MTVH +KGLE   VFL       F  +                        
Sbjct: 553 GAGEKAVQLMTVHASKGLEFNAVFLTGMEEGRFPSEMSL--------------------- 591

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                         ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 -------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|227501454|ref|ZP_03931503.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227077479|gb|EEI15442.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 795

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 111/771 (14%), Positives = 218/771 (28%), Gaps = 164/771 (21%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + + +  V+                + ++  +L      +     
Sbjct: 21  GAGSGKTAVLTRRIAYLMRHRGVNPWESLAITFTNKAAAEMKERVGSLVGPVAERMWVST 80

Query: 66  FSLLSSFFLTQKFTPQKNIITQ----EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
           F  +    L Q       + T     + +     L    K  Q +  K   R    ++  
Sbjct: 81  FHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDMQLDLKKYTPRVLANQISN 140

Query: 122 STLASL-----------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                +                 T    + A Y+   +    +DF+DLI     +  +  
Sbjct: 141 HKNELVGPAEAADKAQQTKNPFETTVADVYAEYQRRLRAANAVDFDDLIGEVVRIFTEH- 199

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +   H+LIDE QDT+  Q+ ++ +L     +G +       L  VGD  Q
Sbjct: 200 --KQVVEFYRRRFKHVLIDEYQDTNHAQYALVAALVGKGELGPDA----PELCVVGDSDQ 253

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY+F GA  + +   +R   +           I L  ++RST  IL   + V +  EN 
Sbjct: 254 SIYAFRGATIRNIEEFERDYPQ--------AHTILLEQNYRSTQTILNAANAVIAKNENR 305

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +  +                     LW        +  + +        +   +      
Sbjct: 306 REKN---------------------LW-------TAHGDGESIVGYVADNEHDE------ 331

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR IA  I  +                  DI V+ R    +  +  +         I  
Sbjct: 332 -ARFIAAEIDALADKGH----------SYSDIAVMYRTNNSSRALEDIF----IRSGIPY 376

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463
                    +   I+D++A  R + + +D +S   ++  P     +    +I     ++ 
Sbjct: 377 KVVGGTRFYERREIRDMVAYLRIMDNPDDTVSLRRIINVPKRAIGDKAQGQIALHAENQG 436

Query: 464 ETVYEYIQKFANCGISKFQ--------HVIKYIHELIHIAQFCS--------PHDFFTLI 507
            +  + +       +                 +  +                  +  T I
Sbjct: 437 ISFGKALADVPRGDVPGLGTRAVNAVTKFNDMMEGIRAQIPGMRDEVTGQPDLGELLTAI 496

Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNS--------------------- 543
           L A   + +       +    +D L+E ++        +                     
Sbjct: 497 LDATGYKAELEKSNDPQDGARLDNLNELVSVAREFTSEAANQLAAAGADAVDPNELLEEG 556

Query: 544 ---YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                SLQ  + ++       +    +    V +MT+HTAKGLE PVVF+       F H
Sbjct: 557 EAAPGSLQAFLEKVSLVADADQI-PDSETGVVTMMTLHTAKGLEFPVVFVAGWEDGQFPH 615

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                        E  RL YVG+TRA +
Sbjct: 616 MRSLGNP----------------------------------KELSEERRLAYVGITRARE 641

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +L + +    S             + +   +    ++    + +       
Sbjct: 642 KLYLTRAILRSAWGNPVTNPASRFLAEIPEDLIDWRREDSDSDLTGSWGAD 692


>gi|297201841|ref|ZP_06919238.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
 gi|197717318|gb|EDY61352.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
          Length = 826

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 120/724 (16%), Positives = 224/724 (30%), Gaps = 135/724 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 128 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 182

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + K  +LK +L   +D               ++T   
Sbjct: 183 RLMALVCRDLDLDP-KRYPPKSFSAKISNLKNELIDEEDF------------AAQATDGF 229

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 230 EKTLAQAYAMYQSRLREANALDFDDLIMTTVNLLR---AFPDVSEHYRRRFRHVLVDEYQ 286

Query: 187 DTSLIQWEVIRSLTEDFFVGKN-----THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           DT+  Q+ ++R L        +         P  L  VGD  QSIY+F GA  + +L+ +
Sbjct: 287 DTNHAQYALVRELVGTSEHPVDVPPSEHDLPPAELCVVGDADQSIYAFRGATIRNILQFE 346

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         + I L  ++RST  ILT  + V    E+ +  +             
Sbjct: 347 EDYPN--------ATTILLEQNYRSTQTILTAANAVIERNESRRPKN------------- 385

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW        +     + +         +       A+ +A  I  +     
Sbjct: 386 --------LW-------TNAGAGARITGYVADTEHDE-------AQFVADEIDRLTDAG- 422

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                     +A D+ V  R    + +   +         +           +   ++D+
Sbjct: 423 --------DAKAGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDV 470

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480
           +A  R + + ED +    +L  P     +     I    + E  +  + +++        
Sbjct: 471 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALSQREKISFPQALKRVDEAYGMA 530

Query: 481 FQ--HVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
            +  + +K  + L+   +        P      +L       +  +    +    I+ L 
Sbjct: 531 ARSTNAVKRFNVLMEELRTIVESGAGPATVLEAVLERTGYLAELQASTDPQDETRIENLQ 590

Query: 531 EFLNFTLRNEQ-----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           E     L  EQ         SL + +    L      I          + +MT+HTAKGL
Sbjct: 591 ELAAVALEFEQESGEGEETGSLSDFLERVALVADSDQIPDEDEDGSGVITLMTLHTAKGL 650

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL      VF H                                       +   
Sbjct: 651 EFPVVFLTGMEDGVFPHMRALG----------------------------------QTKE 676

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            EE  RL YVG+TRA ++L + + S  S   + +       + +        K+     +
Sbjct: 677 LEEERRLAYVGITRARERLYLTRSSLRSAWGQPSYNPPSRFLEEIPAQHVDWKRTGAVAA 736

Query: 704 INKD 707
               
Sbjct: 737 PAGP 740


>gi|114565925|ref|YP_753079.1| superfamily I DNA/RNA helicase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336860|gb|ABI67708.1| ATP-dependent DNA helicase PcrA [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 696

 Score =  289 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 115/646 (17%), Positives = 210/646 (32%), Gaps = 125/646 (19%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKK 142
           + + ++  D + K ++    F + ++     + +  + A     K     + + Y    K
Sbjct: 120 KTLLREENDYETKAEELLYIFKQAKNSLEKPEKYFYSFAVPDFIKERNCRVFSLYNSRLK 179

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              VLDFEDLI+    L ++      +  K      +I++DE QDT+  Q+   R L   
Sbjct: 180 NLNVLDFEDLIVLCIRLFQQNPD---VLEKYQGWFQYIMVDEYQDTNYSQYFWARLLA-- 234

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   S    +F VGD  QSIYS+ GAEP  + R                 +I+L +
Sbjct: 235 --------SRHHNIFVVGDPDQSIYSWRGAEPYNIKRFLGDYP--------DSRLIKLEM 278

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS+ +IL+  + V    E  +                                   + 
Sbjct: 279 NYRSSGNILSAANAVICNNEEREEKQLY----------------------------TQKG 310

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             ++       DS  +       AR IA  I+ ++ ++             +D  V  R 
Sbjct: 311 QGEKLVHFCAGDSFQE-------ARFIADEINQLLRSENR---------HFQDFAVFYRT 354

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +  +            I           +   IKD++A  R + +  D LSF  ++ 
Sbjct: 355 HAQSRALEEAL----LYRNIPYHIVGARKFYERKEIKDILAYLRLVSNNNDLLSFERVIN 410

Query: 443 SPLFNFSEDDIFKICTQRHETE-------TVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
            P     E  + +I     E            E I       ++  +     +  L  + 
Sbjct: 411 VPRRGIGEKTLGRIKAYSEERGISLLDVLAEAESIPGIGRKMLTAMEDFYGMLKYLTDLV 470

Query: 496 QF-CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELI 551
               S  +    ++      ++       +     + L E  +  +  E+     L+E  
Sbjct: 471 TSGASLMELLEQVIEVTGYIEELKKSKATDAEARIENLQELRSLVVEFEREGGQGLEEF- 529

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             L Q     +     N + V +MT+H AKGLE PVVF+      VF             
Sbjct: 530 --LSQTALVQESDELDNSDHVLLMTLHGAKGLEFPVVFITGLEEGVFPS----------- 576

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT- 670
                                    +       EE  RL YVG+TRA ++L +    +  
Sbjct: 577 ------------------------YRSQTAEEMEEERRLCYVGITRAQERLYLSHALSRL 612

Query: 671 --SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
               E+ +    +   + +      + KK+        D  +  ++
Sbjct: 613 LYGYERSNPPSRFLYEIPEELLLSPQQKKVAKPVFQAGDRVLHAKF 658


>gi|292492977|ref|YP_003528416.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
 gi|291581572|gb|ADE16029.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
          Length = 1159

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 169/949 (17%), Positives = 303/949 (31%), Gaps = 113/949 (11%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            S   I +DLW  P  Q+  + +++ L+          + Q  +          R      
Sbjct: 261  SPIGICRDLWARPGIQIESLPQWLGLAQLLLTCEGEWRRQATKAIGFPAPSAARNQE-EK 319

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             FL  +     N + +   K      E  +++      +     T   +    A   L  
Sbjct: 320  QFLKAQKQSFLNFLGRLGEK------EDFRQALHSLRSLPPAHYTEAQWALMEALFQLLP 373

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
               A  +   ++   +DF ++       L + +    +   +D +I H+L+DE QDTSL 
Sbjct: 374  LAVAQLQLVFQERGEVDFTEVAQRAVVALGEAEAPTDLALTLDYQIRHLLMDEFQDTSLS 433

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+ ++  LT  +  G       RTL  VGD  QSIY F  AE    L+  R         
Sbjct: 434  QYILLERLTTGWEPGDG-----RTLLVVGDPMQSIYRFREAEVGLYLQAWRQ-----GVG 483

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                  + L ++FRS   ++  V+  F     A    E +T  + + +S        +  
Sbjct: 484  QLPLVPLTLSVNFRSHQGVVDWVNHAFRQILPATE--EIATGAVPYSASHAFHPPRAEQA 541

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             QV          + E                    R+   I                  
Sbjct: 542  VQVHPFFGKDLAEEAEVVV-----------------RLVEKIKQ--------------AA 570

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                I +LVR R     I  L R       +     +   L     ++DL+AL + +   
Sbjct: 571  LNSTIAILVRSRGHLAEIVPLLRE----AGLRFRALEIEPLGSRPVVQDLLALTKALFHL 626

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKI-----CTQRHETETVYEYIQKFANCGISKFQHVIK 486
             D LS++ +L++P    +  D++ +          +     + IQ+ +  G  +   V +
Sbjct: 627  GDRLSWLTILRAPWCGLTLADLYILAGEDQQAAIWDRIQDEDCIQRLSGEGRQRLARVRR 686

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLNFTLRNEQNSYS 545
             + +     +  SP  +      A  G           E    LD      + +E   + 
Sbjct: 687  VLAKAFAGRRRVSPRRWVEGAWLALGGPACVPESTALEEASVYLDLLEQEAVADEILDFR 746

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            +L E +  L   P  +          ++IMT+H AKGLE   V +   G       H   
Sbjct: 747  ALDEGVGRLFAPPDKL------ADETLQIMTIHRAKGLEFDTVIVPGLGRSPRYESHQLL 800

Query: 606  MHIMPSLNDDP-------GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +      +D P        +       +  + I   +    ++    E  RLLYV +TRA
Sbjct: 801  LWAERPASDSPSGNDNQLLLAPIAETGQQPDAIYHYIKGLHEEKASFENGRLLYVAVTRA 860

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
              QL +          +        ++   +   +   ++   +          E S   
Sbjct: 861  KHQLHLLGQVVLDKTDQPKAPPKRSLLASLWPAVKEEFEVAAPSRRETCTQEEREDSLSF 920

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
             E     R     Q  +     K     +    +                 +E   +   
Sbjct: 921  SEGGLFSRLSIQWQCPEPMPGVKTDIGGLPEAAS-------------ALDPIEFDWAGET 967

Query: 779  TFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                G ++H+ LQ+I                   +        +   A E +N L     
Sbjct: 968  ARYMGTVVHRYLQLIAQEGLEHWNPARITGLGPALRRAL--MGQGVAANELENALERTQE 1025

Query: 831  L----LENPMMTTAMS---CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI-FIFE 882
            +    LE+P     +S     + +E  +SG +N      II   ID+  + Q+ + +I +
Sbjct: 1026 VLKQTLEDPRGRWILSSDHRQALNEYPLSGILN----GRIIRAVIDRTFVDQEGVRWIVD 1081

Query: 883  YKTHHHVPQEIEHI----PYTHIAQLSIYEKILKDSYPN-KSLVCLLIY 926
            YKT  H   + E         +  QL  Y  ++    P  + +   L Y
Sbjct: 1082 YKTGSHEGSDREAFLDREQERYRLQLESYGALVALKEPETQKIRLGLYY 1130


>gi|91217344|ref|ZP_01254304.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755]
 gi|91184452|gb|EAS70835.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755]
          Length = 772

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/696 (14%), Positives = 210/696 (30%), Gaps = 128/696 (18%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150
           K   +  ++   ++  I +       ++ ++   +       +   Y +   K+  +DF+
Sbjct: 135 KYKQILSRISSFKNSLITVNAYLKNPELQEADAMAKRPRLGEIYQEYVDRCFKSGAMDFD 194

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN+LL +      +  K  Q+  +IL+DE QDT+  Q+ ++R+L++         
Sbjct: 195 DLLLRTNELLTRFPE---VLAKYQQKFKYILVDEYQDTNHSQYLIVRALSD--------- 242

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              + +  VGD+ QSIY F GA    +L  ++                 L  ++RST +I
Sbjct: 243 -RYQNICVVGDDAQSIYGFRGANINNILNFQKDY--------SDVKSFRLEQNYRSTKNI 293

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + +    +                           +W              +    
Sbjct: 294 VDAANSIIEKNKTKLDKV---------------------VW-------TENLEGSKIHVN 325

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
              +   +        R +A ++              +   +  +  VL R    +  I 
Sbjct: 326 RLVNDAEEG-------RFVANSV---------TEKCMQEGAKNGEFAVLYRTNAQSRSIE 369

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               +KD++A  R I++ +D+ +   ++ +P     +
Sbjct: 370 DALR----RKDIPYRIYGGLSFYQRKEVKDIIAYLRLIVNPKDEEALKRVINNPSRGIGQ 425

Query: 451 DDIFKICTQRHET--------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             I K+    +          E + +          +K  + +  I          +   
Sbjct: 426 TTIDKLILAANHYKRTIFEIIENINKLDLSINKGTKTKLVNFVNMIKSFKVQNDSLNAFQ 485

Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSSLQELISELEQ 556
              ++       Q+F      E    I+ ++E LN        ++    +   L   LE 
Sbjct: 486 ITEIVSKKTGLLQEFKKDGTPEGIARIENIEELLNGISDFVEGQKELVDAKGSLTEFLED 545

Query: 557 YPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                      A+ + V +MT+H AKGLE P VF+V     +F                 
Sbjct: 546 IALATSLDKETADEDRVALMTIHLAKGLEFPYVFIVGLEEDLFPS--------------- 590

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                               +    +S  EE  RL YV +TRA  +  +    +     K
Sbjct: 591 -------------------AMSLSTRSELEEERRLFYVALTRAEKEAYLTYVVSRYRWGK 631

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                    + +           K                    +      +  ++Q   
Sbjct: 632 LIDAEPSRFIEEIDEKYLDYMIPKDDYRYKPL---------IDKDIFDEVDKSKLRQTKP 682

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
           E   P     P +  +     + P    T  +    
Sbjct: 683 ENGTPPPSHKPTEQQLKRLRKIKPEGDSTPTQKAKP 718


>gi|319405990|emb|CBI79622.1| DNA helicase II [Bartonella sp. AR 15-3]
          Length = 781

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 184/550 (33%), Gaps = 109/550 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + L   Y++  K     DF DL++++  + +       I  +   +  +IL+DE QDT
Sbjct: 174 IGRELYRSYQDRLKNLNACDFGDLLLHSISIFQNNPD---ILREYHNKFRYILVDEYQDT 230

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+  +R L +        H     L  VGD+ QSIY + GA+   +LR ++      
Sbjct: 231 NTAQYLWLRLLAQ-------RHEKQINLCCVGDDDQSIYGWRGAKVDNILRFEKDF---- 279

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   II L  ++RST+ IL     + S   +  G +  S                 
Sbjct: 280 ----FPAKIIRLERNYRSTSHILKTASHLISHNRDRLGKTLFSDQI-------------- 321

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                         + ++    + +DS  +       AR I   I          ++   
Sbjct: 322 ------------NSDDEKVKIHAAWDSAEE-------ARAIGQEIEQAQRAGHSLNH--- 359

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  I +LVR              L     ++          +   I+D +A  R +
Sbjct: 360 -------IAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERREIRDALAYLRVV 408

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY------EYIQKFANCGISKF 481
           +   DDL+F  ++  P     +  +  +    R  +  ++          +      +  
Sbjct: 409 VQPADDLAFERIINIPKRGLGDATLHHLYNSARARSIPLFVAAAEIIATDELKPKIRNAL 468

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           + V++  +   ++ Q     +   +IL        +     +E    L+         EQ
Sbjct: 469 RDVVENFYRWQNMLQHTPHTELAEIILDDSGYTAMWQEDRSSEAPIRLENLKEMIRSMEQ 528

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 + L+S LE     +    +   N V IMT+H+AKGLE   VFL      +F H+
Sbjct: 529 -----FESLLSFLEHVSLVMDSESNEKMNAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 583

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +S  EE  RL YVG+TRA   
Sbjct: 584 RSLD--------------------------------EGGRSGLEEERRLAYVGITRAKKY 611

Query: 662 LIICKHSNTS 671
           L I   SN  
Sbjct: 612 LHIWCVSNRR 621


>gi|260774493|ref|ZP_05883407.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP
           69.14]
 gi|260610620|gb|EEX35825.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP
           69.14]
          Length = 718

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 183/549 (33%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L + Y+EA  +  ++DF ++++ T++LL+       IR        HIL+DE QDT+ I
Sbjct: 167 QLYSAYQEACDRAGLVDFAEILLRTHELLRD---KQHIREHYQARFKHILVDEFQDTNNI 223

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L                +  VGD+ QSIY + GA    + +            
Sbjct: 224 QYAWLRMLAG----------PECHVMIVGDDDQSIYGWRGANIANIEKFTLEFP------ 267

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 268 --SVNTIRLEQNYRSTKTILQASNALIANNTERMGK---------------------ELW 304

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++ S  S ++ L +       AR     I        +         
Sbjct: 305 -------TDGNEGERISVYSAYNDLDE-------ARFTVTKIKEWRDNGGLL-------- 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R I ++
Sbjct: 343 --NDCAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDSLSYLRLIANR 396

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD +F  ++ +P+    +  +  I    R    T+++      N               
Sbjct: 397 HDDSAFERVINTPVRGLGDKTLETIRFAARDRGCTLWDASIALLNEQVLTGRAAGALSRF 456

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ I+ L   +     +     ++        +    G +    I+ L+E +  T + E+
Sbjct: 457 VELINALEDDSAEMPLYVQTDHVIKTSGLYAMYEQEKGEKSKARIENLEELVTATRQFEK 516

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 517 PEEADEMSMLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 576

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 577 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 602

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 603 QKLYITHAE 611


>gi|296118283|ref|ZP_06836864.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968841|gb|EFG82085.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM
           20306]
          Length = 926

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 114/782 (14%), Positives = 237/782 (30%), Gaps = 159/782 (20%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-------TQCIEERFSLLS 70
           + + P     ++  NK  +   E     +   A+ +  A+         +   +    L+
Sbjct: 176 RGVAPWEILAITFTNKAAAEMKERVGQLVGPVAERMWVATFHSICVRILRQQAQLVPGLN 235

Query: 71  SFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKSTLA 125
           + F        + ++T   +++         ++  +Q  +   ++          + T  
Sbjct: 236 TNFTIYDGDDSRRLLTMIAKDMQLDIKKFTSRVLANQISNHKNELTSPDTALAEAEKTKN 295

Query: 126 SLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
              L    + A Y+   +    +DF+DLI     +  +      +     +   H+LIDE
Sbjct: 296 PFELTVARVFAEYQRRLRAANAVDFDDLIGEVVRIFVQHP---QVVEFYRRRFKHVLIDE 352

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+  Q+ ++ +L  D         +   L  VGD  QSIY+F GA  + +   +R  
Sbjct: 353 YQDTNHAQYSLVAALVGD------DRENGPELCVVGDSDQSIYAFRGATIRNIEDFERDY 406

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  IL+  + V +  EN +  +                
Sbjct: 407 P--------GARTILLEQNYRSTQTILSAANAVIAQNENRRKKN---------------- 442

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW       D     +   + +  +           AR IA  I  +        
Sbjct: 443 -----LW------TDHGEGEKVIGYVADNEHDE--------ARFIASEIDALADKGR--- 480

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                     D+ ++ R    +  +  +         I           +   I+D++A 
Sbjct: 481 -------NYSDLAIMYRTNNASRALEDIF----VRSGIPYKVVGGTRFYERREIRDIIAY 529

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-----TETVYEYIQKFANCGIS 479
            R + + +D +S   ++  P     +    +I T          + +Y   Q       +
Sbjct: 530 LRIMDNPDDSVSLRRIINVPKRAIGDKAQAQIATHADNLNISFGKALYFAEQGEVPGLGT 589

Query: 480 KFQHVIKYIHELIHIAQFCSPH------------DFFTLILGAKKGRQQFISRFGNE--- 524
           +  + +   ++++   +   P             +  + IL A   + +  +    +   
Sbjct: 590 RAVNAVTKFNDMMSGIREQIPAMINDVTKQPDLGELVSAILDATGYKAELEASNDPQDGA 649

Query: 525 VIDVLDEFLNFTLRNEQN-------------------------SYSSLQELISELEQYPP 559
            +D L+E ++                                 +  SLQ  + ++     
Sbjct: 650 RLDNLNELVSVAREFSSEAANQLAFDGSDSDIEVAPELSEGEAAPGSLQAFLEKVSLVAD 709

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             +         V +MT+HTAKGLE PVVFL       F H                   
Sbjct: 710 ADQI-PENESGVVTLMTLHTAKGLEFPVVFLTGWEEGQFPHMRSLGDP------------ 756

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                                     E  RL YVG+TRA ++L + +    S+       
Sbjct: 757 ----------------------KELSEERRLAYVGITRAREELYLTRAILRSSWGNPMTN 794

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                + +   +    ++ +  +S+         +S     ++         +       
Sbjct: 795 PASRFLGEIPEDLIDWRREEPQSSMGSAWDYDDSYSYGRSYDSSWSGWGRSSRSAATSPS 854

Query: 740 PK 741
            +
Sbjct: 855 QR 856


>gi|307246245|ref|ZP_07528326.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307255229|ref|ZP_07537044.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259663|ref|ZP_07541387.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306852854|gb|EFM85078.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306861778|gb|EFM93757.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866308|gb|EFM98172.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 732

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/611 (18%), Positives = 208/611 (34%), Gaps = 121/611 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L + +     I  +  Q    ILIDE QDT+ I
Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L                +  VGD+ QSIY + GA+ + + R     QK     
Sbjct: 233 QYDLIRLLAG----------KTGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ S  E+  G +                     LW
Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    Q +         F+ L +       AR +A  I      +           
Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  I    R    T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRDRQITLWQAIQVAVQEEQLSGRAASALLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ I+ L    +     +    ++      + +    G +    I+ L+E +  T +   
Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    S L   ++             S + + V +MT+H+AKGLE P VF+V     +
Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGET--QASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGI 583

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          +   +E  RL YVG+TR
Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L I          K  +      + +      R  +++ + +       +  ++ +
Sbjct: 609 AKKKLTISYAELRRLYGKEERHIASRFIAELPEQHIREVRLRGSINRAASFAPSTPFAKN 668

Query: 718 HPENTPLEREE 728
             + T    E+
Sbjct: 669 SAKTTASCLED 679


>gi|90021650|ref|YP_527477.1| DNA helicase/exodeoxyribonuclease V subunit A [Saccharophagus
            degradans 2-40]
 gi|89951250|gb|ABD81265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Saccharophagus
            degradans 2-40]
          Length = 1155

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 162/971 (16%), Positives = 314/971 (32%), Gaps = 128/971 (13%)

Query: 17   YKDLWPLPYFQVSDINKYVSL-SMETGNPTILKKAQTLQQASQT--QCIEERFSLLSSFF 73
             ++   +    + ++  + +    E G+   +   +     + T  + +E  +  L+   
Sbjct: 243  VQESLQIFEGPLLELAHFAAGKLKEDGSTHPITLLEDQFTFTDTSFETLESFWVPLTKLL 302

Query: 74   LTQKFTPQKNIIT------------QEINKKSPDL----------KEKLKKSQDEFIKIR 111
            LT+  T +K +              + I ++                 L+ +  +     
Sbjct: 303  LTESGTFRKTVNKNTGFPTSKDKNEKAILQERKTAFLNLLGEIKSIPGLEAALAQLSSFP 362

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIR 170
             +  T + +++  A + L     AH +   K++   DF ++ ++    L  + D    + 
Sbjct: 363  VKGYTEQQWQTLDALIQLLPLCTAHLKLVFKESSQTDFTEITLSALRALGSESDTPTDLS 422

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              +D  +NH+LIDE QDTS IQ  +++ LT+++   +      RTLF VGD  QS Y F 
Sbjct: 423  LILDYRLNHVLIDEFQDTSSIQLNLLKLLTQEWQPDEG-----RTLFIVGDGMQSCYGFR 477

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
             A     L  +              S + L ++FRS   ++  V+ VF            
Sbjct: 478  NANVGIFLNIR-----DNGLENVPMSAVNLCVNFRSNQAVVNWVNDVFK----------- 521

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                +   +      G V     V        +   E      D+  +       A+ + 
Sbjct: 522  ----VAFPAQNDINRGAVSYQPSVPFDTKELLSSHVECHGFVGDNGNE-----AEAQFVT 572

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              I+  +            V   + I +LVR R     I    R       I+    D  
Sbjct: 573  SIIAQQLE-----------VNPNQSIAILVRNRPHLTKIITALRS----QNIAYQAVDID 617

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             L     ++DL+ + R +  Q D L+++  L++P    S  ++  +       +T     
Sbjct: 618  PLLARPCVQDLLTITRVMQDQSDYLAWLAFLRAPWCGLSLSELTVLLGDHIYADTQPATH 677

Query: 471  QKFANCGIS------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
              FA                 + Q     + +  H  Q          +  A  G    I
Sbjct: 678  NVFATLHNEDLLSLLNTDTKNRVQRARMLLAQSFHQTQRKPLAALVESLWFALGG--ALI 735

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
            +   NE+ D        T   +           + L++          AN   V++MT+H
Sbjct: 736  ADNSNELDDARTYLQLLTKHEKGGRIRQWDAFYAGLQKLYAR-PTPVDANVQPVQLMTMH 794

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK----SRNNIVSD 634
             +KGLE   VF+        +             +      +  P S       + + + 
Sbjct: 795  KSKGLEFDTVFVCGLSRPSKADDSPLLFWHERLNSYSEPQTLLSPLSPKIESEADPVYAF 854

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            L +  K+S   E  RLLYV  TRA  +L I      +   +        M+   +     
Sbjct: 855  LKEEGKQSRLLEDTRLLYVACTRAKARLYITAALTETPAAEIKPPANNTMLARIW----- 909

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                   ++I +      + +   P N  +E   +        +    L   + + +   
Sbjct: 910  -------DAIQEQIITHVDPNVDMPSNDSVE-TGSNYVRFLTPEAISGLHGLVDSALVTE 961

Query: 755  YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---------NFI 805
                 +  D       E    DN     G ++H++L VI                   + 
Sbjct: 962  TEKQKTVFDNSDINIFEDREVDNTAAAIGTLMHRILAVICDDGLDAWPLEKLAGMHKPWR 1021

Query: 806  TSYCTKNAKLWPAKEYKN-LLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKD 861
                        A++    +  S+ ++L++      +S     S+ E  V          
Sbjct: 1022 AQLTANGVPAATAEQALQTITQSVLKMLDDETARWLLSNSHPVSHCEWVVHYGSQPRDA- 1080

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQE-----IEHIPYTHIAQLSIYEKILKDSYP 916
                  ID+  I     +I +YKT      E     +      +  Q+  Y+K++K+  P
Sbjct: 1081 -----VIDRFFIEGNTAWIVDYKTSTPNKGETLEQFVSAQQAEYQPQVDFYQKLVKEIVP 1135

Query: 917  NK-SLVCLLIY 926
             + ++   L +
Sbjct: 1136 PEITIKKALYF 1146


>gi|302877434|ref|YP_003845998.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302580223|gb|ADL54234.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 723

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 97/629 (15%), Positives = 201/629 (31%), Gaps = 118/629 (18%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           ++ Q+     +++       ++          + A Y+   ++  V+DF +L++   +LL
Sbjct: 149 REMQNFISGSKEQGLRAHDVEAFDPYTRRKVDVYAEYDAQCQREGVVDFSELLLRCFELL 208

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            + +    +R    +  +HIL+DE QDT+ +Q++ ++ L                LFAVG
Sbjct: 209 SRNES---LRTHYQERFHHILVDEFQDTNPLQYQWLKLLAGQ----------HNALFAVG 255

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +    R  +  A        +I+L  ++RS  +IL   + + S 
Sbjct: 256 DDDQSIYAFRGANVGNMKDLLRDFKVEA--------VIKLEQNYRSHGNILDAANALISN 307

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             N  G +                     LW         Q   +   + +  D      
Sbjct: 308 NRNRLGKN---------------------LW------TSEQGGEKLRVYEAPTDVEE--- 337

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   I  +              ++  ++ +L R    + ++           
Sbjct: 338 -----ANFIVGEIRQLKTEG----------LKLTEMALLYRSNAQSRVLEHAL----VSA 378

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            +S          +   IK  +A  R + + +DD + + ++  P        I +I  + 
Sbjct: 379 GLSYRVYGGLRFFERQEIKHALAYLRLMQNTDDDNALLRIINYPTRGIGARSIEQIQDSA 438

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           +    T+++   +       K    +  I  +          +    +L      + + S
Sbjct: 439 KMHGTTLWDAAARAG----GKVSAFVGLIEAMRSATSALPLPEIMEHVLVHSGLIEHYQS 494

Query: 520 RFG------NEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
             G       E ++ L E +        +N   SL   ++                 + +
Sbjct: 495 EKGAKKREAEERLENLKELVTAATLFVHENEDDSLTSFLTHASLEAGE--HQAGDQDDAL 552

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MTVH AKGLE   VF+      +F H++                              
Sbjct: 553 HLMTVHAAKGLEFNAVFITGLEENLFPHQNS----------------------------- 583

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                       +E  RL+YV +TRA  +L +          + +       + +   + 
Sbjct: 584 -----QRVDGGLDEERRLMYVAITRARRRLYMSFAQRRMLNGQVSYGAPSSFLKELPEDL 638

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            +    +         +     +     +
Sbjct: 639 LQWLSAREAPRNPFASFGYSAPAAPVQHS 667


>gi|255326665|ref|ZP_05367741.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296]
 gi|255295882|gb|EET75223.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296]
          Length = 990

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 127/818 (15%), Positives = 236/818 (28%), Gaps = 149/818 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   + P   +  +S  + +    +          A  L+         +  
Sbjct: 206 AAAEMRERIEALVGPRAKHMWISTFHSFCVRVLRR-----EAAALGLKSTFTIYDSTDS- 259

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L S  + +     K    + +  +   LK +L  +         R  +   ++ T   
Sbjct: 260 QRLLSLIIKELNLDTKKFTAKAVGNRISALKNELVSA----EAYASRVASDNPYEKT--- 312

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  +    LDF+DLI  T  LLKK      I     ++  HIL+DE Q
Sbjct: 313 ---IAQIYTVYTQRLRAANSLDFDDLIGRTVFLLKKFPE---IANYYRRKFRHILVDEYQ 366

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRT------LFAVGDEKQSIYSFHGAEPKRVLRE 240
           DT+  Q++++R L                      L  VGD  QSIY+F GA+ + +   
Sbjct: 367 DTNHAQYQLVRELVGAHTKAPADRGPYPDAVPPAELTVVGDSDQSIYAFRGADIRNITDF 426

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           ++               I L  ++RST +IL+  + V     + +               
Sbjct: 427 EKDYPN--------AHTILLEQNYRSTQNILSAANAVIERNPDRRPKK------------ 466

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW        S    +   + +         S    AR I   I  +    
Sbjct: 467 ---------LW------TASGAGAKIIGYVA--------ESEHAEARYITREIDRLADE- 502

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +Q  D+ +  R    +  +  +         +           +   IKD
Sbjct: 503 --------HGVQPGDVAIFYRTNAQSRTLEDML----MRAGLPYRVVGGTRFYERKEIKD 550

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI- 478
            +A  R + + +DD++   +L  P           +         + Y   ++ A+    
Sbjct: 551 ALAYLRALSNPDDDVNVRRILNEPKRGIGAKSESVVAEYASANRISFYVAARQAADIPAL 610

Query: 479 -----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
                 K+   ++ + +L  IA+          +L          +    +    ++ L 
Sbjct: 611 GAAAVKKYAEFVRLMDDLAQIARTEPAATCLEAVLEQTGYLAALRASKDIQDESRVENLS 670

Query: 531 EFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANH-------------------- 569
           E L+  +  E  +  + L++ +  +          +                        
Sbjct: 671 ELLDAMVEFETENPGADLEQFLEHVALVADADSIPNRPASAEGENASAAQIAAEAAEAKA 730

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V +MT+HTAKGLE PVVFL      +F H+                           
Sbjct: 731 QGMVTLMTLHTAKGLEFPVVFLTGMEHGLFPHQRALT----------------------- 767

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                       +    E  RL YVG+TRA ++L + +    +   KS        + + 
Sbjct: 768 -----------DEKEMSEERRLAYVGLTRAMERLYLTRSETRTMWGKSQFNPPSPFLEEI 816

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                  K+    +        AY                         +          
Sbjct: 817 PEELIEWKRTAGFSGFGASGMGAYGARGGGSYGGSSYGNSYGGGYSGGSRSGYGSGGYSG 876

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR-GLI 785
              +  Y    S        +  +  S+  T +  G  
Sbjct: 877 GYGSGGYSFGGSRGSYDPYESRPARRSEPSTADINGSA 914


>gi|293401242|ref|ZP_06645386.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305368|gb|EFE46613.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 759

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 106/607 (17%), Positives = 196/607 (32%), Gaps = 119/607 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A+YE+  K+   LDF+DL+I    +LK ++    +R K  +   +I +DE QD
Sbjct: 167 QIKADVYAYYEKRLKEMYGLDFDDLLIFAYRILKDKEE---VRAKWQRRFTYIHVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
              +Q+ +IR L  D             L  VGD  Q+IY++ GA+   ++  +R     
Sbjct: 224 VDNLQYAIIRLLVGD----------HSYLCVVGDPDQTIYTWRGAQVDIIMNFERDFP-- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RST  IL   + +     N                        
Sbjct: 272 ------DSKTVILNQNYRSTQPILNGANALIRNNRNRIEKDLF----------------- 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                      + + +     +T+  D+             +A  I  +  +        
Sbjct: 309 ----------TEVEGDNPIIHFTAMDDANEPV--------WVASRIMALSHSG------- 343

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  +DI VL R    +  +         D++I           D   IKD ++  R 
Sbjct: 344 ---VCYRDIAVLYRSNYLSRGLEKAL----LDFRIPYRIYGGIRFYDRAEIKDALSYLRL 396

Query: 428 ILSQEDD--------LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           +  +++D        LS   ++  P        +  I  Q     T    I K    G  
Sbjct: 397 LAPKQEDDEKELYKNLSIKRIINMPKRGIGAKTMELIEQQAEHDNTNMYEIIKQYEIGKG 456

Query: 480 K----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
           K     Q  +  I E   +    S       +L               E ++ + E ++ 
Sbjct: 457 KAKANIQAFVALIEECRQLVNEISIDQLLEKVLEDSGYLDMLREDKEIERLENIKELISD 516

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                +N+      L   L++      +   ++ + V++MT+H AKGLE   VF+     
Sbjct: 517 IADYVENNPQG--SLQEYLQEISLYTDKEADSSGDFVQLMTIHAAKGLEFDNVFVYSLCE 574

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F +                                        ++  EE  RL YV  
Sbjct: 575 GIFPNDKSVI--------------------------------EGGQAALEEERRLAYVAF 602

Query: 656 TRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           TRA  QL +     +S   ++ K+  R   ++  +         +    + ++     A+
Sbjct: 603 TRARKQLFLSDSYGYSYVLDKLKTTSRFVKELPEEYLEEVGAKPRNHFASDVDTFSGNAF 662

Query: 713 EWSTHHP 719
             S    
Sbjct: 663 LSSQAPQ 669


>gi|325689990|gb|EGD31994.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK115]
          Length = 766

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 121/819 (14%), Positives = 243/819 (29%), Gaps = 161/819 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53
           G    ++  L ++  + +    V+  N             + ++A+ L            
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKTEAQDCLIATF 87

Query: 54  -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEF 107
                +   +           +     ++ T  K I+    ++ K  + +  L    +  
Sbjct: 88  HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKNLNLDPKKWNERAILGTISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D      +         +       Y++  +++  +DF+DLI+ T  L  +     
Sbjct: 148 NDLIDEVAYANLADDMYT--EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD-- 203

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 204 -VLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++           +  ++ L  ++RST  IL   ++V     N +  
Sbjct: 253 GWRGADMQNILDFEKDYP--------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW           + ++  +    D   +       A 
Sbjct: 305 N---------------------LW-------TQNEDGEEIVYYRANDEQDE-------AL 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TI  +                 KD  VL R    +  +            I     
Sbjct: 330 FVARTIDQLSREG----------YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMV 375

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     I+D+++    I +  D++S+  ++  P        + KI      +  ++
Sbjct: 376 GGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISL 435

Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                        + +L       +  +    +L          ++ 
Sbjct: 436 LDASANILLSPVKGKAAQAVYDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQA 495

Query: 522 GNE---VIDVLDEFLNFTLRNEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEV 572
             E    I+ ++EFL+ T   +++       S L +L   L +              +EV
Sbjct: 496 TLESQARIENIEEFLSVTKNFDESPDNPTDESGLDKLSRFLNDLALIADTDDGDTESSEV 555

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFLV     VF      +                           
Sbjct: 556 TLMTLHAAKGLEFPVVFLVGMEENVFPLSRASEDEDELEEERRL---------------- 599

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                              YVG+TRA   L +   ++     K+N       + +   + 
Sbjct: 600 ------------------AYVGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDL 641

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
              + +                    P N+  +   T      +     +  S  +    
Sbjct: 642 LDYQGLA------------------RPSNSSFKVSYTNSDTNSDTSQFGQGMSLAQALQE 683

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQ----TFNRGLIIH 787
                 PS+I T      +S  S        +  G I H
Sbjct: 684 RKRQAAPSSISTGSLPFGKSGQSQPSKPEVAWAIGDIAH 722


>gi|165976747|ref|YP_001652340.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165876848|gb|ABY69896.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 732

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 112/551 (20%), Positives = 192/551 (34%), Gaps = 121/551 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L + +     I  +  Q    ILIDE QDT+ I
Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L  +             +  VGD+ QSIY + GA+ + + R     QK     
Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ S  E+  G +                     LW
Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    Q +         F+ L +       AR +A  I      +           
Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  I    R+   T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ I+ L    +     +    ++      + +    G +    I+ L+E +  T +   
Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    S L   ++             S + + V +MT+H+AKGLE P VF+V     +
Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          +   +E  RL YVG+TR
Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608

Query: 658 ASDQLIICKHS 668
           A  +L I    
Sbjct: 609 AKKKLTISYAE 619


>gi|190150646|ref|YP_001969171.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|307263993|ref|ZP_07545594.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189915777|gb|ACE62029.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306870682|gb|EFN02425.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 732

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/611 (18%), Positives = 210/611 (34%), Gaps = 121/611 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L + +     I  +  Q    ILIDE QDT+ I
Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L  +             +  VGD+ QSIY + GA+ + + R     QK     
Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ S  E+  G +                     LW
Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    Q +         F+ L +       AR +A  I      +           
Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  I    R+   T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ I+ L    +     +    ++      + +    G +    I+ L+E +  T +   
Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    S L   ++             S + + V +MT+H+AKGLE P VF+V     +
Sbjct: 526 PDETEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          +   +E  RL YVG+TR
Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L I          K  +      + +      R  +++ + +       +  ++ +
Sbjct: 609 AKKKLTISYAELRRLYGKEERHIASRFIAELPEQHIREVRLRGSINRAASFAPSTPFAKN 668

Query: 718 HPENTPLEREE 728
             + T    E+
Sbjct: 669 SAKTTASCLED 679


>gi|118602354|ref|YP_903569.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567293|gb|ABL02098.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 718

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/545 (17%), Positives = 183/545 (33%), Gaps = 110/545 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE   ++N ++DF +L+I + +LLK       +         HIL+DE QDT+ +
Sbjct: 173 EVFELYEAYCQENDLIDFAELLIRSYELLKNN---TDLLNHYQARFEHILVDEFQDTNTV 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q++ I+ L           +    +F VGD+ QSIY + GA+ + + +            
Sbjct: 230 QYKWIKLLF----------NGHNKIFCVGDDDQSIYGWRGAKIENITKLCTDF------- 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +   N  G S                     LW
Sbjct: 273 -TPIETIRLKQNYRSTGNILNASNALITHNVNRMGKS---------------------LW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      N +            +       A  +   I  +I              
Sbjct: 311 -------TDAGNGELIDVYEARTETDE-------ANYVISNIQKLITNG----------A 346

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + +           Y I  +        ++  IKD ++  R I + 
Sbjct: 347 SPSDCSILYRFNAQSRIFEEAL----IKYNIPYIIYGGLKFFEYTEIKDALSYLRLIENS 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK----FANCGISKFQHVIK 486
            D+++F  ++  P        + KI    +    ++++   +          +     I 
Sbjct: 403 ADNVAFERVVNFPTRGIGNVTVKKIRTFAQDNHTSLFQAAIQISSILPTRAANALSSFIN 462

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            I ++    +  +  +  T +L        + +       + L + +  T +      + 
Sbjct: 463 LIKQITDDTKHLNLSEKVTNLLNTSGLIMHYSNDKIGSKKENLKKLITITKQYNHEQDNK 522

Query: 547 LQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           + E++  +           +A+ N  V++MT+H+AKGLE P VFLV     +F  +  K 
Sbjct: 523 MSEVMGFISLTSLDSSGNTNASINQNVQLMTIHSAKGLEFPCVFLVGMEEDLFPSRQSKN 582

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +                                   +E  RL YVGMTRA  +L + 
Sbjct: 583 EPHLT----------------------------------DEERRLCYVGMTRAMKKLSLS 608

Query: 666 KHSNT 670
                
Sbjct: 609 YAIKR 613


>gi|268680252|ref|YP_003304683.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618283|gb|ACZ12648.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
          Length = 681

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/619 (15%), Positives = 204/619 (32%), Gaps = 126/619 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIK-IRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           K  I + +N  S      +      +   + D    ++  +       +   L   YE+ 
Sbjct: 115 KKRILKSLNTSSELPTSMIASEISRYKTSLLDPKMAWEKAEQHH--YQVIAKLYEQYEDY 172

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
              N ++DF+DL++    +L+  +    +  +  +   +I++DE QDT+ +Q++++R L 
Sbjct: 173 LLSNNLVDFDDLLVLPYKILESDE---RLCEETSRRYQYIMVDEYQDTNELQYKLLRKLC 229

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                      +   L  VGD+ QSIY + GA  K +L      +           I++L
Sbjct: 230 H----------THSNLCVVGDDDQSIYGWRGANIKNILEFHESFEN--------VKIVKL 271

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  IL   + +        G   +ST          G+   + +          
Sbjct: 272 EKNYRSTTQILKAANDLIEHNRGRIGKVLEST---------KGEGKAIDVL--------- 313

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                            +    +  A  IA  I  +I +           +  +DI VL 
Sbjct: 314 -----------------ESHDENQEALSIARKIRKLIESG----------VSPRDIAVLY 346

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +  +       K    I           +   +KD+++  R I +  DD S   +
Sbjct: 347 RINALSRSLEEGLNKEK----IPYNMVGGVKFYERAEVKDVISYLRVIANPHDDFSIKRI 402

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK---------FQHVIKYIHEL 491
           +  P     +  + +I    ++               I K          +  ++ I  +
Sbjct: 403 INRPKRGLGKVTMERIFKAAYDNSQSIYAYITCNESAIEKEATKKAALALKAFVENIAHM 462

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYS-SLQE 549
            +  Q  S +D    +  A   ++ + ++  + E +  +DEF        + +    + +
Sbjct: 463 QN-VQQNSTYDMIDAMEEAFAIKEYYNNQPDSLERLSNIDEFYGLFRDYVKQNPHMGVDD 521

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++EL                 + IM++H +KGLE   +F++      F           
Sbjct: 522 FLNELALQSDQDHIDSE----NISIMSIHASKGLEFEYLFVIGLEEGFFPLVGDGS---- 573

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                              EE  RL YV +TRA  +L +    +
Sbjct: 574 ---------------------------------DIEEERRLGYVAITRAKKELTLSFSGS 600

Query: 670 TSNEKKSNQRTWYDMVYDS 688
              + +  + +    + ++
Sbjct: 601 RFYKGRRTELSKSRFLKEA 619


>gi|125717696|ref|YP_001034829.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis SK36]
 gi|125497613|gb|ABN44279.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis SK36]
          Length = 762

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 95/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +  +    +L          ++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMLLDLRERLDDFTVTELVEAVLEKTGYSAALAAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            +++       S L +L   L +              +EV +MT+H AKGLE P+VFLV 
Sbjct: 516 FDESPDNPADESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPIVFLVG 575

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF      +                                              Y
Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           VG+TRA   L +   ++     K+N       + +   +    + +    
Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNQPTRFLREISSDLLDYQGLARPA 651


>gi|169831771|ref|YP_001717753.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638615|gb|ACA60121.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 718

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/548 (18%), Positives = 182/548 (33%), Gaps = 118/548 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   + A Y+   ++N  LDF+DL+     L ++      +  +  +   H+L+DE QD
Sbjct: 172 ELTARVYAAYQARLERNNALDFDDLLFLAVRLFREFP---PVLEQYRRRFLHLLVDEYQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++  L +          + R L  VGD  Q IY + GA+ + +L  +R     
Sbjct: 229 TNHAQYVLVNLLAQ----------THRNLTVVGDPDQCIYGWRGADLRNILNFERDYP-- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +++L  ++RST  IL   + V     + +                      
Sbjct: 277 ------DARVVKLEQNYRSTGRILEAANHVIRFNRHRKEK-------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +LW        ++   +        D   +       AR +A  I  +           
Sbjct: 311 -ELW-------TARGAGEAPVLHQARDERAE-------ARFVAREIRRLRAQGR------ 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 +D  V  R    + ++          + +           D   IKDL+A  + 
Sbjct: 350 ----SYRDFAVFYRTHAQSRVLEDEL----LRHGVPYTIIGGVKFYDRKEIKDLLAYLKL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISK 480
           I++ +DD++   ++  P     +  + K             +     + I+  +      
Sbjct: 402 IVNPDDDVALTRIINVPRRGVGKASLVKFFAYVRESSVACADALREADRIRGLSAGVREA 461

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537
              + + +                  +L          +    E     + L EFL+ T 
Sbjct: 462 MGALGEQLARWRER--EGGVTGLTEQVLEESGYLTALEAERTVEARTRMENLSEFLSVTR 519

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     +L E +++L  Y    +    ++   V +MT+H+AKGLE PVVFL      V
Sbjct: 520 EFDLQRGGTLAEFLNDLALYTDLDRFDGESSQ--VTLMTLHSAKGLEFPVVFLTGMEEGV 577

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H       +                                    EE  RL YVG+TR
Sbjct: 578 FPHTRAFSEPV----------------------------------EMEEERRLCYVGITR 603

Query: 658 ASDQLIIC 665
           A ++L + 
Sbjct: 604 ARERLFLT 611


>gi|254497559|ref|ZP_05110348.1| DNA-dependent helicase II [Legionella drancourtii LLAP12]
 gi|254353217|gb|EET11963.1| DNA-dependent helicase II [Legionella drancourtii LLAP12]
          Length = 725

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 111/580 (19%), Positives = 196/580 (33%), Gaps = 117/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + + YE+A +   V+DF +L++ T++LL+       I     Q    IL+DE QDT+ I
Sbjct: 172 AIYSAYEQACQTAGVIDFAELLLRTHELLRDNPE---ILAHYRQRFQAILVDEFQDTNTI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  +             + AVGD+ QSIY + GA+ + + +            
Sbjct: 229 QYAWIRLLAGEGSA----------VLAVGDDDQSIYGWRGAKVENIQQFANDF------- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +   II L  ++RST+ IL   + + +   +  G                       LW
Sbjct: 272 -KGTKIIRLEQNYRSTSTILDAANALITHNNSRMGK---------------------DLW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   +    ++    S F+ L +       AR ++  I   I             +
Sbjct: 310 -------TAGSAGEKILVFSAFNELEE-------ARFVSERIMMEINQG----------V 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A +I +L R    + +I            I+          D   +KD +A  R +++ 
Sbjct: 346 SADEIAILYRSNAQSRVIEEAL----LRAGIAYRIYGGLRFFDRAEVKDTLAYLRLLVNP 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ------KFANCGISKFQHV 484
            DD +F  ++  P     E  +  +    + E  ++++  +      +            
Sbjct: 402 GDDTAFERVVNFPTRGIGEKTLEDVRHYAKSEQCSLWQAAKTLLQSGEMPQRAGLALAKF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFISRFGNEVIDVLDEFLNFTLRN-- 539
           +  I EL          +  + ++          +         +D L E +N   +   
Sbjct: 462 VDLIEELQRNTVEMELDEQLSSVIQMSGLYAHFSKIKGDKSESRLDNLQELINAAKQFRY 521

Query: 540 EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           EQ+    L  + + L        +    A+   V +MT+H AKGLE P+VFLV     VF
Sbjct: 522 EQDEEEELPLVNAFLAHASLEAGEMQADAHERSVHLMTLHAAKGLEFPIVFLVGLEEGVF 581

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             K                                      +    EE  RL YVGMTRA
Sbjct: 582 PGKQS----------------------------------MEEPGRLEEERRLCYVGMTRA 607

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +LI+          +         + +         ++
Sbjct: 608 MQKLILSYAEVRRQYGREEYHRPSRFLRELPQELLDEVRV 647


>gi|258625863|ref|ZP_05720738.1| DNA helicase II [Vibrio mimicus VM603]
 gi|262163724|ref|ZP_06031464.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223]
 gi|258581827|gb|EEW06701.1| DNA helicase II [Vibrio mimicus VM603]
 gi|262027704|gb|EEY46369.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223]
          Length = 723

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/690 (16%), Positives = 220/690 (31%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++ T +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRTLELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +                + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARVENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLIANRNDDTAFERVINTPPRGLGDKTLDTIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N               ++ I+ L         H      +      + +    G 
Sbjct: 441 SIGLLNDQVLTGRAAGALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLFEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P+VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPLVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|217967779|ref|YP_002353285.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724]
 gi|217336878|gb|ACK42671.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724]
          Length = 625

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/589 (17%), Positives = 210/589 (35%), Gaps = 113/589 (19%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKS--TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +  +++  +++D+  T + F +  + +   +   +   YE+  +KN  LDF DL++ + +
Sbjct: 137 RDIKEKISRLKDQLITPQEFSNIISNSFDEIVLEVYKKYEKELRKNNALDFADLLLYSIN 196

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL ++     I   +  +I ++L+DE QDT+  Q+E+ + +  D           +    
Sbjct: 197 LLYEKPA---ICGFLQDKIEYVLVDEYQDTNKAQYELFKIIVLD----------KQKFSV 243

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD+ QSIYSF GA+ + + + ++  +           II L  ++RST  IL + + + 
Sbjct: 244 VGDDDQSIYSFRGADYQNIFKLEKDFKN--------LKIIFLTKNYRSTQQILEIANALI 295

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +  +                          +LW           + +  ++   F +L +
Sbjct: 296 ANNDKRYPK---------------------ELW----------SDKRDGTYPILFRALNE 324

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
           E      A  +   I   +              +  +I +L R  + +            
Sbjct: 325 EDE----ANFVIRQIRLELAKGR----------KLSEIAILYRTNRQSRPFEEAL----I 366

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I           D   +KD++A    I +  D +S   ++  P     E     I  
Sbjct: 367 RNNIPYKVIGGLSFFDRKEVKDIVAYLNIIYNPNDLISLKRIINVPKRGIGEATFNMIRE 426

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
             ++  ++ E I + +       +         + +    +  +    I+       +F 
Sbjct: 427 YYNKGYSLLEAIGEVSRIKRE-VKSFYDLWKYFLDLKSSLNIRELIATIIDKTNYLSEFQ 485

Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           ++   E    +D L E ++F       +  +L + +S L      ++ +       V ++
Sbjct: 486 NQGKEELTIRMDNLMELMDFADNFPGKTQDTLGDFLSHLSLTSSKLESSLEEGK--VSLI 543

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+ KGLE  VVFLV     +  H                                   
Sbjct: 544 TLHSVKGLEFEVVFLVGMEEGLLPH----------------------------------- 568

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                +   +E  RL YVG+TRA ++L +       N  +   R   ++
Sbjct: 569 YNAATREEIQEERRLCYVGITRAKEKLYLSYAVKRYNRYQEPSRFIEEI 617


>gi|222149095|ref|YP_002550052.1| DNA helicase II [Agrobacterium vitis S4]
 gi|221736080|gb|ACM37043.1| DNA helicase II [Agrobacterium vitis S4]
          Length = 858

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 101/597 (16%), Positives = 184/597 (30%), Gaps = 111/597 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y+   K     DF DL+++   + +       +     Q   +IL+DE QDT+ 
Sbjct: 246 RELYAAYQARLKSLNACDFGDLLLHPIRMFRANPD---VLKDYHQRFRYILVDEYQDTNT 302

Query: 191 IQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            Q+  +R L +            +    +  VGD+ QSIY + GAE   +LR ++     
Sbjct: 303 AQYMWLRLLAQRPSTKTADGKVTNGTVNICCVGDDDQSIYGWRGAEVDNILRFEKDFP-- 360

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST  IL     + +  E   G +  +                
Sbjct: 361 ------GAKVIKLERNYRSTEHILGAAGFLIAHNEGRLGKTLFTDRV------------- 401

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                          N ++    + +DS  +       AR +   I  +           
Sbjct: 402 -------------DPNDEKVVVHAAWDSEEE-------ARAVGEEIEQLQRNQH------ 435

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D+ +LVR              L     ++          + L I+D MA  R 
Sbjct: 436 ----KLNDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRM 487

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISK 480
           +    DDL+F  ++ +P     +  +  +    R     +           +        
Sbjct: 488 VCQPADDLAFERIVNTPKRGLGDTTVRTLHDYARKRDIPMLAAASDIIETDELKPKARKA 547

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
              V+        + +     +    IL        + +    E    ++ L E +    
Sbjct: 548 LFDVVTDFRRWQDLLENTPHTELAEQILDESGYTAMWQNDKSAEAPGRLENLKELIRSME 607

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E         + S +E     +    + N + V IMT+H+AKGLE   VFL      +
Sbjct: 608 AFES--------MRSFMEHVSLVMDAETNENLDAVSIMTLHSAKGLEFETVFLPGWEEGL 659

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H+                                  +    ++  EE  RL YVG+TR
Sbjct: 660 FPHQR--------------------------------ALDEGGRAALEEERRLAYVGLTR 687

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           A  +  +   SN               + +       V +++ +             
Sbjct: 688 AKRRCHLWFVSNRRIHGLWQSTMPSRFLDELPPAHVEVAEVETSYGGYGRGGYGQSR 744


>gi|157151050|ref|YP_001450617.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157075844|gb|ABV10527.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 762

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 94/592 (15%), Positives = 186/592 (31%), Gaps = 123/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +       +L      +   ++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMLLDLRERLDDFTVTKLVEAVLEKTGYIEALATQATLESQARIENIEEFLSVTKN 515

Query: 539 N--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    +++    L   +++L     T      ++   V +MT+H AKGLE PVVFL
Sbjct: 516 FDESPDNPADESGLDKLSRFLNDLALIADTDDGDMESSE--VTLMTLHAAKGLEFPVVFL 573

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V     VF      +                                             
Sbjct: 574 VGMEENVFPLSRASEDEDELEEERRL---------------------------------- 599

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     K+N       + +   +    + +    
Sbjct: 600 AYVGITRAEKILYLTNANSRMLYGKTNFNHPTRFLREISSDLLNYQGLARPA 651


>gi|255994849|ref|ZP_05427984.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989]
 gi|255993562|gb|EEU03651.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989]
          Length = 753

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 100/561 (17%), Positives = 180/561 (32%), Gaps = 122/561 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +++ +   Y+   K N  +DF+DL++NT  L  K      I     +   +I++DE QD
Sbjct: 180 QISQQVYEAYQNVLKANNAMDFDDLLLNTVILFSKYPD---ILKIYAERFKYIMVDEYQD 236

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS +Q+E+I  L              + +  VGD+ Q IY + GA  + +L  +++    
Sbjct: 237 TSSLQFELINKLAH----------VHKNICVVGDDDQCIYEWRGATIENILSFEKVY--- 283

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   II+L  ++RST +IL     V S     +                      
Sbjct: 284 -----KGTKIIKLERNYRSTKNILDAAHAVISNNSKRKEKK------------------- 319

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW   V                   S+    +A   A  I   I   +  +       
Sbjct: 320 --LWTGSVEGEKI--------------SIEVYENAHAEAEFIVDKIRQAVAEEGK----- 358

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KDI +L R    + L     +     + +           +   I D++A  R 
Sbjct: 359 ----TYKDIAILYRNNSQSRLFEEALK----RWDVPYRILSGIRFYERSEIVDMLAYLRV 410

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYIQKFANCGISK 480
             +  DD++F+  +  P     +  + K+    R    +++      E + + +      
Sbjct: 411 TENPFDDIAFLRCINEPARGLGKKALEKVASFARERGISLFAGLLMDECLAELSAAARRG 470

Query: 481 FQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNF 535
            +  IK I     +   +     +    I+      ++       E     + + E +  
Sbjct: 471 AEEFIKMIKHAQDMLLDENTRISNVLKYIIETSGYERKLKLADTLESDAKLENIYELVAS 530

Query: 536 TLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
               E +S        L   + E+               + V +MT+H++KGLE  VVF+
Sbjct: 531 VADREGSSAGDDEKLTLSAFLEEIALISDVDNHD--ETADAVVLMTLHSSKGLEFNVVFI 588

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 +F                                              EE  RL
Sbjct: 589 PGMEEGIFPSGQGDDNPG----------------------------------KIEEERRL 614

Query: 651 LYVGMTRASDQLIICKHSNTS 671
            YVG TRA ++L +       
Sbjct: 615 CYVGFTRAKEELFLSAAKWRR 635


>gi|85711578|ref|ZP_01042636.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145]
 gi|85694730|gb|EAQ32670.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145]
          Length = 724

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 114/690 (16%), Positives = 227/690 (32%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L  +S        
Sbjct: 30  GAGSGKTRVLVHRIAWLIQERRYSPYSILAVTFTNKAASEMRGRVEQLLGSSVRNMWIGT 89

Query: 66  FSLLS---------SFFLTQKFTPQKNIITQEINKKS------PDLKEKLKKSQDEFIKI 110
           F  L+            L Q F    +   Q + K+        + +   K++Q      
Sbjct: 90  FHGLAHRLLRAHYMDVGLPQNFQILDSDDQQRLVKRLIKSMNLDEKRWPAKQAQWYINGK 149

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D     +  ++   +    K +   Y+E+  +  ++DF +L++  ++LL+       +R
Sbjct: 150 KDEGLRAQHIETFDPTEQTLKQIYEAYQESCDRAGLVDFAELLLRAHELLRDN---KTVR 206

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               +   HIL+DE QDT+ IQ+  IR L+               +  VGD+ QSIY + 
Sbjct: 207 EHYQKRFRHILVDEFQDTNSIQYAWIRLLSGQD----------NIVTIVGDDDQSIYGWR 256

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +                  I L  ++RST +IL   + V +   +  G    
Sbjct: 257 GARVENIQQFLDDYPA--------AMTIRLEQNYRSTGNILRAANSVIANNSDRLGK--- 305

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW             +  S  + F+ + +       AR I 
Sbjct: 306 ------------------DLW-------TEGNEGEPISLYAAFNEMDE-------ARYIV 333

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                    +D+ +L R    + ++           ++        
Sbjct: 334 GRIEEWRDQGGAL----------QDVALLYRSNAQSRVLEEAL----LHARLPYRIYGGL 379

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY 469
              +   IKD +A  R + +++DD +   ++ +P        +  I    R + +++++ 
Sbjct: 380 RFFERQEIKDALAYLRLVSNRDDDAAIERVINTPTRGIGNRTLDIIRQTAREQKKSLWQA 439

Query: 470 ------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                  ++ A    +     I+ I+      +  +       ++        + +  G 
Sbjct: 440 ATQLVDEKQLAGRARNAVASFIELINTTDDETEDFTLGRLSNEVISRSGLLAMYEAEKGE 499

Query: 524 EVI---DVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +     + L E ++      Q+     L  L + L        +       + V++MT+H
Sbjct: 500 KAETRVENLKELVSACENFTQDETEEDLTPLNAFLAHAALEAGEEQADEYQDAVQLMTLH 559

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P+VF+      VF  +                                     
Sbjct: 560 SAKGLEFPMVFMTGVEEGVFPSQQSMDEPG------------------------------ 589

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                 EE  RL YVGMTRA  +L+I    
Sbjct: 590 ----RLEEERRLCYVGMTRAMQKLVITYAE 615


>gi|327402801|ref|YP_004343639.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
 gi|327318309|gb|AEA42801.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
          Length = 771

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 95/558 (17%), Positives = 176/558 (31%), Gaps = 121/558 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y     K   +DF+DL+  TN LL+       +      +  +IL+DE QDT+
Sbjct: 174 LARIYKAYAVRCFKAGAMDFDDLLYQTNILLRDFPD---VLSYYQHKFKYILVDEYQDTN 230

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +++ L   F            +  VGD+ QSIYSF GA  + +L  +        
Sbjct: 231 FAQYLIVKKLAAVFE----------NICVVGDDAQSIYSFRGANIQNILNFRNDYP---- 276

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                + + +L  ++RST +I+   + + S  +            I+         G   
Sbjct: 277 ----DYKLYKLEQNYRSTQNIVEAANSIISKNK----------EQIQKNVWTNNDKGN-- 320

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L   + +  D++                         R IA  I         F    + 
Sbjct: 321 LIRVIRAMTDNEEG-----------------------RIIANKI---------FDVKHQE 348

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D  +L R  + +       R       I               IKDL++  R   
Sbjct: 349 TGDWTDFAILYRTNRQSRAFEEALR----KMNIPYKIYGGLSFYQRKEIKDLLSYFRLTA 404

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCG-------ISKF 481
           +Q+D+ +   ++  P     +      I    H    +++ I +F             K 
Sbjct: 405 NQKDEEALKRVINYPKRGIGKTSWENIIIAANHHDVAIWDIISEFGKYPVSIPSATKQKI 464

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-----EVIDVLDEFLNFT 536
              +  I       Q  + +     I  +    ++  S         E    ++E L   
Sbjct: 465 SEFVIMIQSFTAQLQSQNGYQLAQTIAKSSGILKELYSEKDKGPEEVERYQNIEELLAAI 524

Query: 537 LRNE----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                   +    +L + + ++             + N++ +MT+H++KGLE   V+LV 
Sbjct: 525 KEFTVQRGEEDPGTLADFMMDVALLTDAD-NETEEDKNKISLMTIHSSKGLEFKHVYLVG 583

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F  +                                  +    ++  EE  RL Y
Sbjct: 584 LEENLFPSQ----------------------------------LSINSRTELEEERRLFY 609

Query: 653 VGMTRASDQLIICKHSNT 670
           V +TRA     I   ++ 
Sbjct: 610 VAVTRAEKNCTISYAASR 627


>gi|260770702|ref|ZP_05879632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972]
 gi|260614283|gb|EEX39472.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972]
 gi|315178541|gb|ADT85455.1| DNA-dependent helicase II [Vibrio furnissii NCTC 11218]
          Length = 724

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/569 (17%), Positives = 186/569 (32%), Gaps = 116/569 (20%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +             L   Y++A  +  ++DF ++++   +LL+       IR 
Sbjct: 153 EGLRPAHIDAYRDPVTQTYLQLYTAYQDACDRAGLVDFAEILLRALELLRDN---KHIRE 209

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                  HIL+DE QDT+ IQ+  +R +                +  VGD+ QSIY + G
Sbjct: 210 HYQARFKHILVDEFQDTNNIQYAWLRMMAG----------PQSHVMIVGDDDQSIYGWRG 259

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + + +                + I L  ++RST  IL   + + +      G     
Sbjct: 260 AKVENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNTLIANNTERMGK---- 307

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            +LW                S  S ++ L +       AR +  
Sbjct: 308 -----------------ELW-------TDGNVGDPISVYSAYNELDE-------ARFVVG 336

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I        I            D  +L R    + ++            ++        
Sbjct: 337 KIKEWQDKGGIL----------NDCAILYRNNAQSRVLEEAL----LQTGLAYRIYGGMR 382

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYI 470
             +   IKD ++  R + ++ DD +F  ++ +P     +  +  +    R    T+++  
Sbjct: 383 FFERQEIKDALSYLRLMNNRNDDTAFERVVNTPTRGLGDKTLDTVRFAARDRGCTLWQAS 442

Query: 471 QKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            +            S     ++ I+ L   +   S H     ++      + +    G +
Sbjct: 443 VQLLEEKVLTGRAASALSRFVELINALEDDSAEMSLHSQTDHVIKTSGLFEMYQQEKGEK 502

Query: 525 ---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
               I+ L+E +  T + E+      +  L + L        +       + V++MT+H+
Sbjct: 503 SKARIENLEELVTATRQFEKPEEADEMTMLTAFLTHAALEAGEGQADEFDDAVQLMTLHS 562

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF+V     +F  +                                      
Sbjct: 563 AKGLEFPLVFMVGVEEGMFPSQMS----------------------------------AE 588

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHS 668
           +    EE  RL YVGMTRA  +L I    
Sbjct: 589 EAGRLEEERRLCYVGMTRAMQKLYITYAE 617


>gi|265753474|ref|ZP_06088829.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235188|gb|EEZ20712.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 796

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/680 (14%), Positives = 206/680 (30%), Gaps = 126/680 (18%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           A +   + +   Y E  +++  +DF+DL++ T  L +       I  K  ++  ++L+DE
Sbjct: 169 AKVPATRDIYRQYWERCRQSDAMDFDDLLLYTYMLFRDHPE---ICRKYAEQFRYVLVDE 225

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA    +L+  ++ 
Sbjct: 226 YQDTNFAQHSIVLQLTQE----------HQRVCVVGDDAQSIYSFRGANIDNILKFTQLY 275

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                   +   + +L  ++RST  I+   + +             S             
Sbjct: 276 --------KGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIKKEVFS------------- 314

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                           +   +     + +  + +          +A  I  +   +    
Sbjct: 315 ---------------EKAKGEPIGVFNAYSDVEEG-------EIVANQIVKLRSREH--- 349

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                     D  +L R    + +     R       +               IKD+++ 
Sbjct: 350 ------YSYNDFAILYRTNAQSRIFEEALR----KRSLPYKIYGGLSFYQRKEIKDVISY 399

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQKFANC 476
            R  ++  D+ +F  +L  P     +  + K I        +++        Y       
Sbjct: 400 FRLAVNPNDEEAFKRVLNYPARGIGDTTLNKVIDAAAQHHVSLWMVLEEPLAYGLNINKG 459

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
             +K Q   + +   I      + ++   +I+       +       E     + ++E +
Sbjct: 460 MHTKLQGFRELVKSFIVEIPKKNAYELGAMIVRQSGIMNEIYQSNDPENLSRQENIEELI 519

Query: 534 N------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           N           E N    L + +SE+             +  ++ +MT+H+AKGLE   
Sbjct: 520 NGMHDFCAIREEEGNENILLTDFLSEVSLLTDQD-NEKEEDAEKIILMTIHSAKGLEFKN 578

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VF+V     +F        +                                     EE 
Sbjct: 579 VFVVGLEENLFPSALSLNSY----------------------------------KELEEE 604

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA +   +    +     K    +    + D   +  ++ + +       +
Sbjct: 605 RRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRFLKDIDVHFLKLPQEEQMARRIDE 664

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPSTIDTK 765
               +    +   +  L  E   +                      P    + PS     
Sbjct: 665 RASRFCREQNERASRFLFDESASQPSYGRSSSNLSGGQKSFFIGERPKAEIIRPSVPRNL 724

Query: 766 GKTNLESLLSDNQTFNRGLI 785
            K  L ++   +     G +
Sbjct: 725 TKVGLATVSKPSAA---GTL 741


>gi|160945249|ref|ZP_02092475.1| hypothetical protein FAEPRAM212_02768 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442980|gb|EDP19985.1| hypothetical protein FAEPRAM212_02768 [Faecalibacterium prausnitzii
           M21/2]
          Length = 892

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/646 (16%), Positives = 197/646 (30%), Gaps = 121/646 (18%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            I+ K   +K  + +      ++             + S      + A YE+  K+    
Sbjct: 187 SIDDKFLPIKAAINQMSRWKDQLVSPEQALADHARDVKSTQ-TARIYAAYEKKLKEAGAF 245

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI  T  LL +      +R     +  ++L+DE QDTS+ Q+ ++  LT       
Sbjct: 246 DFDDLIYQTVQLLAEHPD---VREFYQNKYRYLLVDEYQDTSVAQFRLVSLLTG------ 296

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                 R +  VGD+ QSIY F GA  + +L  +++              I L  ++RST
Sbjct: 297 ----PERNICVVGDDDQSIYRFRGATIENILNFEKLYP--------GTKTIRLEQNYRST 344

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           ++IL   + V       +G +                     LW              + 
Sbjct: 345 SNILNAANCVIQHNTERKGKT---------------------LW-------TDNGEGDKV 376

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
              +  +   +       A  IA  I   +                 D  +L R    + 
Sbjct: 377 QVYTAENEQDE-------ASHIADIIGQHLKEGG----------HLADHAILYRMNAQSA 419

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            I            I           D   +KD+ +    + +  DD+    ++  P   
Sbjct: 420 PIESYF----TRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEPARK 475

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSPH 501
                +  I     +       I   A+                +    L       +  
Sbjct: 476 IGATTVDVIADLAGQQGVSMLDIISHADQYAKLSRAVMPLLKFWQIYQRLQDSLATRTLD 535

Query: 502 DFFTLILGAKKGRQQFIS------RFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISE 553
           +F + ++     +    +          + +  L + +N       +    ++L+  + +
Sbjct: 536 EFASDVIELTGYKAMLEADAAKGHEDAADRLQNLGQLVNNVKNYCDQHGEEATLEGYLED 595

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +             + ++V +MT+H+AKGLE P VFL+     VF  +  K         
Sbjct: 596 IALISDIDSYN--ESSDQVVLMTIHSAKGLEFPYVFLIGMEEGVFPSEMSK--------- 644

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                      ++  EE  RL YVG+TRA  +L I         
Sbjct: 645 -------------------------YSEADLEEERRLAYVGITRAKKELYISNSVTRMLY 679

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            ++ +      + +         +  +    +       E+S   P
Sbjct: 680 GRTQRNEPSRFLREIEPEYIEETRSPVLEQRSHMGGWGSEYSDTVP 725


>gi|119964268|ref|YP_946829.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1]
 gi|119951127|gb|ABM10038.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1]
          Length = 848

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 119/783 (15%), Positives = 236/783 (30%), Gaps = 136/783 (17%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   +        +S  +      +      +      L          +  
Sbjct: 132 AAAEMRERIEALVGARAKGMWISTFHSSCVRILRREAANV-----GLNSNFSIYDSADSL 186

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P+K    + I  K   LK +L           D  +           
Sbjct: 187 RLITLVAKNLDLDPKK-FAPKAIQHKISALKNEL----------IDADSYVSSANHNDPF 235

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  ++   +DF+DLI  T  + +       +     +   H+L+DE Q
Sbjct: 236 EQAVAEVFKGYTQRLRQANAMDFDDLIAETVYMFRAFPA---LAESYRRRFRHVLVDEYQ 292

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R +     +G +T   P  L  VGD  QSIY+F GA+ + ++  +     
Sbjct: 293 DTNHAQYALVREIVG---LGTDTGVEPSELTVVGDSDQSIYAFRGADIRNIVEFEADYPN 349

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I+L  ++RST +IL+  + V S   N Q                     
Sbjct: 350 --------ARTIKLEQNYRSTQNILSAANSVISRNPNRQEKR------------------ 383

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW        ++ + ++       +   +       A+ IA  I  +   +      
Sbjct: 384 ---LW-------TAEGDGEKIVGYVGENEHDE-------AQFIAKEIDRLQDEE------ 420

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               ++  D+ +  R    +  I  +         +           +   IKD +A  R
Sbjct: 421 ---GLRPGDVAIFYRTNAQSRSIEDVL----VRVGLPYKVVGGTRFYERKEIKDALAYLR 473

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479
            +++ +DD++   +L  P     +     +        T +    + A+          +
Sbjct: 474 VLVNPDDDVNLRRVLNEPKRGIGDRAEGAVAALAERERTSFMTAARRADQAPGMATRSVN 533

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                +K + +L  +A           +L          +    +    ++ L E +   
Sbjct: 534 AVLGFVKLLDDLAEVASGSGAAAALEAVLEQTGYLAGLRASNDPQDESRVENLAELVAVV 593

Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSANHN------------EVRIMTVHTAKGL 583
              E+++   SL E + ++       +   +   +             V +MT+HTAKGL
Sbjct: 594 REYERDNPDGSLGEFLEQVSLVADADQIPDAPGADIDAAVAEAKRMGVVTLMTLHTAKGL 653

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL      +F H+                                          
Sbjct: 654 EFPVVFLTGMEHGIFPHQ----------------------------------RSATDPKE 679

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             E  RL YVG+TRA  +L + +    S   +S        + +        K+  ++  
Sbjct: 680 LAEERRLAYVGLTRARQRLYVTRSEVRSMWGQSQYNPASQFLEEIPSELVEWKREGMSRQ 739

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
                  A   S  +  +                     + + +  +  +P     S + 
Sbjct: 740 AAGGWGSAPIGSNRYGGSFWGAGTSRGAAASPTAGFDADVPAAVVRNRVQPQKEVISVVV 799

Query: 764 TKG 766
              
Sbjct: 800 GDK 802


>gi|195978018|ref|YP_002123262.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974723|gb|ACG62249.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 765

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 124/780 (15%), Positives = 241/780 (30%), Gaps = 135/780 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--------- 56
           G    ++  L ++  + +    V+  N             + ++A  L  A         
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERALALSPATKDTLIATF 87

Query: 57  ----SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIR 111
                +    E      +  F       Q+ ++ + +   + D K+  ++         +
Sbjct: 88  HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVKALNLDPKKWSERSILATISNAK 147

Query: 112 DRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +     + ++   + L           Y+E  +++  +DF+DLI+ T  L  +      +
Sbjct: 148 NDLLDERAYELGASDLYSQTVARCYKAYQEELRRSEAMDFDDLIMMTLRLFDQNPD---V 204

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                Q   +I +DE QDT+  Q++++  L   F          + +  VGD  QSIY +
Sbjct: 205 LAYYQQRYQYIHVDEYQDTNHAQYQLVTLLASRF----------KNICVVGDADQSIYGW 254

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +L  ++              ++ L  ++RST  IL   ++V     + +    
Sbjct: 255 RGADMQNILDFEKDYP--------DARVVLLEENYRSTKKILQAANEVIQHNRHRRPKK- 305

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW           + +Q  +    D   +       A  +
Sbjct: 306 --------------------LW-------TQNADGEQIVYYRANDERDE-------AVFV 331

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A TISNM           +     KD  VL R    +  I            I       
Sbjct: 332 ASTISNM---------CLELGKSFKDFAVLYRTNAQSRTIEEAL----LKSNIPYTMVGG 378

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
                   I+D++A    + +  D++SF  ++  P        + K+      + +++ E
Sbjct: 379 TKFYSRKEIRDVIAYLTVVANPSDNISFERIVNEPKRGVGPGTLDKLRQFAYGQEQSLLE 438

Query: 469 YIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                               +   + +L       S       +L           +   
Sbjct: 439 AASSLEQSPLKGKAAQAMLALASLLSDLRADLDRLSITALAEALLEKSGYLDMLRVQNTL 498

Query: 524 E---VIDVLDEFLNFTLRNE------QNSYSSLQELISEL-EQYPPTIKRAHSANHNEVR 573
           E    I+ ++EFL+ T   +      Q   + +  L   L +          +A   EV 
Sbjct: 499 ESQARIENIEEFLSVTKSFDDVSAQQQEHEAGIDRLGRFLNDLALIADSDDGNAETAEVT 558

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE PVVFL+     VF                                   
Sbjct: 559 LMTLHAAKGLEFPVVFLIGMEEGVFP---------------------------------- 584

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   EE  RL YVG+TRA + L +   +  +   KS+       + +   N  
Sbjct: 585 LARAAEDQDELEEERRLAYVGITRAEECLFLTNANTRTLFGKSSYNRPTRFLKEMSENLL 644

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             + +      +     + +          L      ++ M +        +P+    N 
Sbjct: 645 SFQGLARPAHASFGVTFSQQGQRQFCAGMSLSEAIQSRKSMAQPARAASKPTPLPFGPNA 704


>gi|212692987|ref|ZP_03301115.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855]
 gi|237725615|ref|ZP_04556096.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212664456|gb|EEB25028.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855]
 gi|229436302|gb|EEO46379.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 796

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 98/680 (14%), Positives = 206/680 (30%), Gaps = 126/680 (18%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           A +   + +   Y E  +++  +DF+DL++ T  L +       I  K  ++  ++L+DE
Sbjct: 169 AKVPATRDIYRQYWERCRQSDAMDFDDLLLYTYMLFRDHPE---ICRKYAEQFRYVLVDE 225

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA    +L+  ++ 
Sbjct: 226 YQDTNFAQHSIVLQLTQE----------HQRVCVVGDDAQSIYSFRGANIDNILKFTQLY 275

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                   +   + +L  ++RST  I+   + +             S             
Sbjct: 276 --------KGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIKKEVFS------------- 314

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                           +   +     + +  + +          +A  I  +   +    
Sbjct: 315 ---------------EKAKGEPIGVFNAYSDVEEG-------EIVANQIVKLRSREH--- 349

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                     D  +L R    + +     R       +               IKD+++ 
Sbjct: 350 ------YSYNDFAILYRTNAQSRIFEEALR----KRSLPYKIYGGLSFYQRKEIKDVISY 399

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQKFANC 476
            R  ++  D+ +F  +L  P     +  + K I        +++        Y       
Sbjct: 400 FRLAVNPNDEEAFKRVLNYPARGIGDTTLNKVIDAAAQHHVSLWMVLEEPLAYGLNINKG 459

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
             +K Q   + +   I      + ++   +I+       +       E     + ++E +
Sbjct: 460 MHTKLQGFRELVKSFIVEIPKKNAYELGAMIVRQSGIMNEIYQSNDPENLSRQENIEELI 519

Query: 534 N------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           N           E N    L + +SE+             +  ++ +MT+H+AKGLE   
Sbjct: 520 NGMHDFCAIREEEGNENILLTDFLSEVSLLTDQD-NEKEEDAEKITLMTIHSAKGLEFKN 578

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VF+V     +F        +                                     EE 
Sbjct: 579 VFVVGLEENLFPSALSLNSY----------------------------------KELEEE 604

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA +   +    +     K    +    + D   +  ++ + +       +
Sbjct: 605 RRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRFLKDIDVHFLKLPQEEQMARRIDE 664

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPSTIDTK 765
               +    +   +  L  E   +                      P    + PS     
Sbjct: 665 RASRFCREQNERASRFLFDESASQPSYGRSSSNLSGGQKSFFVGERPKAEIIRPSVPRNL 724

Query: 766 GKTNLESLLSDNQTFNRGLI 785
            K  L ++   +     G +
Sbjct: 725 TKVGLATVSKPSAA---GTL 741


>gi|114564558|ref|YP_752072.1| DNA-dependent helicase II [Shewanella frigidimarina NCIMB 400]
 gi|114335851|gb|ABI73233.1| ATP-dependent DNA helicase UvrD [Shewanella frigidimarina NCIMB
           400]
          Length = 727

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/579 (17%), Positives = 194/579 (33%), Gaps = 116/579 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     +     +   HIL+DE QDT+ IQ
Sbjct: 173 IYKVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFRHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L  +             +  VGD+ QSIY + GA+ + + R  +          
Sbjct: 230 YAWIRVLAGN----------TANVMIVGDDDQSIYGWRGAQIENLHRFLKDF-------- 271

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L  ++RSTA+IL   + V +   +  G                      +LW 
Sbjct: 272 SGATTIRLEQNYRSTANILNASNAVIANNPDRLGK---------------------ELW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +  S    F+ + +       A+ I   IS+                 
Sbjct: 310 ------TEDKDGEPISVYCAFNEMDE-------AKFIVGRISDWHEKGGSL--------- 347

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +  +L R    + ++            ++          +   IKD M   R I +Q 
Sbjct: 348 -SECAILYRSNAQSRVLEEAF----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLINNQN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD +F  ++ +P     +  +  I  T R    T+++           A    +     +
Sbjct: 403 DDAAFERVVNTPARGIGDRTLDIIRSTARQHELTLWQACVSLIEEKVLAGRAANAINGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541
           + I  +         +     ++     R  + +  G +     + L+E +      E  
Sbjct: 463 ELIIAMRTDTADMLLYRMADDVIDRSGLRTMYEAEKGEKAQARIENLNELVTAARSFEMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL + L        +    A  + V++MT+H+AKGLE P+VF+      +F  
Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                           +E  RL YVGMTRA  
Sbjct: 583 KMALDEG----------------------------------DRLDEERRLCYVGMTRAMQ 608

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +L I    +     + +  +    + +         +I+
Sbjct: 609 KLYISYAESRRIYGREDYASPSRFINEIPEKFVEQIRIR 647


>gi|313632856|gb|EFR99807.1| ATP-dependent DNA helicase PcrA [Listeria seeligeri FSL N1-067]
          Length = 545

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/565 (17%), Positives = 185/565 (32%), Gaps = 115/565 (20%)

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F  
Sbjct: 1   ALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF-- 55

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                   + L  VGD  QSIY + GA+   ++  ++               I L  ++R
Sbjct: 56  --------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEENYR 99

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           ST  IL   ++V     N +  +                     LW        S    +
Sbjct: 100 STKRILEAANRVIENNGNRKPKN---------------------LW-------TSNAEGK 131

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
           +  +        +       A  +   I   +   +             D  +L R    
Sbjct: 132 KIFYHKALTEKEE-------AAYVVMKIQEEVNNSSR---------PLSDFAILYRTNAQ 175

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
           + ++            ++          D   IKD++A  R I + EDD+S   ++  P 
Sbjct: 176 SRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINVPK 231

Query: 446 FNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCS 499
                  + K+         +++E + +                    +     +  F S
Sbjct: 232 RGVGPGTLEKLNNVATAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDFLS 291

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQN-SYSSLQELISELE 555
             +    IL     R    +    E     + +DEFL+ T   E+     +L   +++L 
Sbjct: 292 VTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENEDKTLIAFLTDLA 351

Query: 556 QYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                 K    +   +  V +MT+H+AKGLE PVVFLV     +F H             
Sbjct: 352 LVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS------------ 399

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                     ++   EE  RL YVG+TRA ++L +    +    
Sbjct: 400 ----------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLY 437

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKI 698
            + +       + +   +   +   
Sbjct: 438 GRPSSNQESRFIGEIPRDLLELANE 462


>gi|328945990|gb|EGG40137.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1087]
          Length = 762

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 97/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLIYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEMSLLDASANILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +  D    +L          ++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMLLDLRERLDDYTVTDLVEAVLEKTGYAASLAAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            ++     +  S L +L   L +              +EV +MT+H AKGLE PVVFLV 
Sbjct: 516 FDESPDNPSDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF      +                                              Y
Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           VG+TRA   L +   ++     K+N       + +   +    + +    
Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLNYQGLARPA 651


>gi|295105534|emb|CBL03078.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii
           SL3/3]
          Length = 892

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 104/646 (16%), Positives = 199/646 (30%), Gaps = 121/646 (18%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            I+ K   +K  + +      ++             + S      + A YE+  K+    
Sbjct: 187 SIDDKFLPIKAAINQMSRWKDQLVSPEQALADHARDVKSTQ-TARIYAAYEKKLKEAGAF 245

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI  T  LL +      +R     +  ++L+DE QDTS+ Q+ ++  LT       
Sbjct: 246 DFDDLIYQTVQLLAEHPD---VREFYQNKYRYLLVDEYQDTSVAQFRLVSLLTG------ 296

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                 R +  VGD+ QSIY F GA  + +L  +++              I L  ++RST
Sbjct: 297 ----PERNICVVGDDDQSIYRFRGATIENILNFEKLYP--------GTKTIRLEQNYRST 344

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           ++IL   + V       +G +                     LW              + 
Sbjct: 345 SNILNAANCVIQHNTERKGKT---------------------LW-------TDNGEGDKV 376

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
              +  +   +       A  IA  I   +                 D  +L R    + 
Sbjct: 377 QVYTAENEQDE-------ASHIADVIGQHLKEGG----------HLADHAILYRMNAQSA 419

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            I            I           D   +KD+ +    + +  DD+    ++  P   
Sbjct: 420 PIESYF----TRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEPARK 475

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSPH 501
                +  I     +       I   A+                +    L       +  
Sbjct: 476 IGATTVDVIADLAGQQGVSMLDIISHADQYAKLSRAVMPLLKFWQIYQRLQDSLATRTLD 535

Query: 502 DFFTLILGAKKGRQQFIS------RFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISE 553
           +F + ++     +    +          + +  L + +N       +    ++L+  + +
Sbjct: 536 EFASDVIELTGYKAMLEADAAKGHEDAADRLQNLGQLVNNVKNYCDQHGEEATLEGYLED 595

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +             ++++V +MT+H+AKGLE P VFL+     VF  +  K         
Sbjct: 596 IALISDIDSYN--ESNDQVVLMTIHSAKGLEFPYVFLIGMEEGVFPSEMSK--------- 644

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                      ++  EE  RL YVG+TRA  +L I         
Sbjct: 645 -------------------------YSEADLEEERRLAYVGITRAKKELYISNSVTRMLY 679

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            ++ +      + +         +  +    ++      E+S   P
Sbjct: 680 GRTQRNEPSRFLREIEPEYIEETRSPVLEQRSRMGGWGSEYSDTVP 725


>gi|302524115|ref|ZP_07276457.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4]
 gi|302433010|gb|EFL04826.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4]
          Length = 804

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 121/790 (15%), Positives = 232/790 (29%), Gaps = 143/790 (18%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL------LS 70
            + + P     ++  NK  +   E     + K+A  +  ++                 +S
Sbjct: 66  ERGVHPGEIMAITFTNKAAAEMRERVAALVGKRANAMWVSTFHSMCVRILRREAKTLDMS 125

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKSTLA--SL 127
           S F        K +IT        D K+   +        +++     +   S  A    
Sbjct: 126 SSFSIYDSDDTKRLITLVARDLDIDPKKYAARTLAVHISNLKNELVDPEQAASKAANDLE 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                + A Y+         DF+DLI+ T  LL+       +     +   H+L+DE QD
Sbjct: 186 RRVAEVYAEYQRRLSSANAFDFDDLIMRTVSLLQ---AFPDVAEYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R+L            +   L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYTLVRALAGTEATDTGIEPAE--LCVVGDADQSIYAFRGATIRNIEEFERDFPN- 299

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL+  + V +   N +                      
Sbjct: 300 -------AHTILLEQNYRSTQTILSAANAVIARNPNRRAKR------------------- 333

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW       DS    +   + S  D           A  +A  I ++           
Sbjct: 334 --LW------TDSGDGEKIVGYVSDNDHDE--------AAFVAGEIDSLAEKGE------ 371

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D+ V  R    + +   +         +           +   ++D++A  R 
Sbjct: 372 ---ADYSDVAVFYRTNNQSRVFEEIF----IRLGLPYKVVGGVRFYERREVRDMIAYLRV 424

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK--------FANCGI 478
           + + +D +S   +L  P     +     +      E  + +  ++               
Sbjct: 425 LANPDDTVSLRRILNVPKRGIGDRAEAVVATHAERERISFWAALRDAVDDKVALLNPRSA 484

Query: 479 SKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
                 +  + EL  +A   +  HD    +L     R +       +    ++ L E + 
Sbjct: 485 KAITGFVTLLDELQEMASSGTEVHDLLEAVLERTGYRAELEESDDPQDASRVENLTELVT 544

Query: 535 FTLRNEQ----------------NSYSSLQELISELEQYPPTIKRAHSANHNE------- 571
                 +                +   +   L + LE+           + +        
Sbjct: 545 VAREFAEFTAEVTNDENAELVLDDGVPAPGSLPAFLERVSLVADADSIPSPDGGEEGDGG 604

Query: 572 ---VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V +MTVHTAKGLE PVVF       VF H                            
Sbjct: 605 AGVVTLMTVHTAKGLEYPVVFCTGWEDGVFPHMRALGDP--------------------- 643

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                        +   E  RL YV +TRA  +L + +    S   +         + + 
Sbjct: 644 -------------AELAEERRLAYVAITRARQRLYVSRALTRSAWGQPQMNPASRFLDEL 690

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
             +    ++++ ++    +   +   S+     T   R  +           K     + 
Sbjct: 691 PPDLVDWRRLEPSSPGFGNFGSSSGSSSGPRAATTWGRRSSSSSTSSSSPFGKAWKDTVA 750

Query: 749 NDINEPYILN 758
             ++    ++
Sbjct: 751 LKLDVGDRVS 760


>gi|218289369|ref|ZP_03493603.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240475|gb|EED07656.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 757

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 126/767 (16%), Positives = 240/767 (31%), Gaps = 146/767 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  + ++ +   +V                 + ++ + L     +      
Sbjct: 34  GAGSGKTSVLTRRIVYLIAERRVPPWAILAITFTNKAAREMEERIERLVGPVASDIWTST 93

Query: 66  FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           F  + +  L +                       ++ +    I+ +  + +  L      
Sbjct: 94  FHAMCARILRRDIHHLGYTSAFTVLDAADQVSLVRRLMQEMNIDVRKFEPRAVLHAISQH 153

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++R       +  S      +   +   YE   ++N  LDF+DL++ T +L +K    
Sbjct: 154 KNELRSAEKALDLAGSPYD--KMVGDVYLAYERRLRENQALDFDDLLVKTVELFRK---V 208

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +        +HI +DE QDT+  Q+ +++ L E            R L  VGD  QSI
Sbjct: 209 PDVLAYYQHRFSHIHVDEYQDTNHAQYVLVKLLAE----------RRRNLCVVGDSDQSI 258

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +R              +I L  ++RST  IL + ++V    +    
Sbjct: 259 YGWRGADIRNILEFQRDYP--------DARVIRLEQNYRSTGRILRIANQVIQHNQMRLE 310

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW        ++     +                + A
Sbjct: 311 KN---------------------LWTDRGEGEKAKLFVAPD--------------ERVEA 335

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I+ M+              + +D+ +L R    + ++            I    
Sbjct: 336 DLVADEIARMVADGR----------RYRDVAILYRTNAQSRVLEEAF----LQRGIPYRI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  +   +KD++A  R I +  DD+SF+ ++  P     +  + K+    R    +
Sbjct: 382 YGGLRFYERREVKDVIAYLRLIANPNDDVSFLRVVNVPKRGIGDTTLEKLADYARQRGTS 441

Query: 466 VYEYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++E     A  GISK      Q  ++ I  L     F    D    +L     R+   + 
Sbjct: 442 LFEAALHAAEAGISKKAASALQSFVELIQTLQLQRAFLPLTDLTDELLERSGYREALRAE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYS--SLQELISELEQYPPTIKRAHS-------AN 568
              E     + LDEFL+ T   ++N      +  L   L                    +
Sbjct: 502 RSLEAENRLENLDEFLSLTREFDENGVPEGEMGALEQFLTHVALVSDADLPGGRPGRRED 561

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            +EV +MT+H AKGLE PVVFLV     VF H+                           
Sbjct: 562 LDEVSMMTLHAAKGLEFPVVFLVGLEEGVFPHRRALDGGEELEEERRL------------ 609

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMV 685
                                  YVG+TRA ++L +    +       +      +   +
Sbjct: 610 ----------------------CYVGITRAMERLYLTTCRSRMLFGERRSFTPSRFLSEM 647

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +       +         +D         H   +T      ++ +
Sbjct: 648 PAADIERVGEEDAAFGRGGWRDSHAGVRAPAHVVADTASAPRLSVPR 694


>gi|256847800|ref|ZP_05553245.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715489|gb|EEU30465.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis
           101-4-CHN]
          Length = 759

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 125/774 (16%), Positives = 229/774 (29%), Gaps = 148/774 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   +             + ++   L   S        
Sbjct: 28  GAGSGKTRVLTHRVAYLIEEKNVLPWHILAITFTNKAAREMKERIGKLLGDSANDIWVST 87

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDE 106
           F  L               + F       Q+ ++ +      I+ K  D ++ L    + 
Sbjct: 88  FHALCVRILRRDIDKLGFNTAFTIADPGEQRTLMKRICAELNIDTKKFDPRQILSAISNA 147

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +       K  +       +       Y+   + N  LDF+DLI+ T  L K     
Sbjct: 148 KNAMMTPDEYEK--RYQDPFRKMVGRAYRLYQRELETNQTLDFDDLIMKTIQLFKAD--- 202

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           A        +  +I +DE QDT+  Q+E++  L + +            L  VGD  QSI
Sbjct: 203 AETLQYYQDKFQYIHVDEYQDTNDAQYELVHMLADGY----------HNLCVVGDADQSI 252

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA    +L  ++             + I L  ++RST  IL   ++V +  +  + 
Sbjct: 253 YGWRGANMNNILNFEKDYPN--------ATTIMLEQNYRSTQTILNAANEVIANNQKRKD 304

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW              + S+           S    A
Sbjct: 305 KN---------------------LW-------TENGQGDKISYYRA-------QSEHDEA 329

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +   I   +              +  D  VL R    + +I            +    
Sbjct: 330 YYVVKKIQEQMRE---------HGYKYGDFAVLYRTNAQSRIIEETF----LKSSVPYTM 376

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  D   I+D++A    + +  D +SF  ++ +P        I K+         +
Sbjct: 377 VGGHKFYDRKEIRDILAYLTLVANPNDSMSFERVVNTPKRGIGPTSIEKLRDFAATNNMS 436

Query: 466 VYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           +    Q      + +    +K     + +  +   A   S  +   LIL     R+    
Sbjct: 437 LLTATQNIMLANQISTSVRNKLDGFAQEMRTIQDQADELSITELTDLILERTGYRKALQD 496

Query: 520 R-----FGNEVIDVLDEFLNFTLRNEQNSYSS-------LQELISELEQYPPTIKRAHSA 567
                      +D LDEF + T   ++N+          L   +++L    P        
Sbjct: 497 EAEKSLQAQSRLDNLDEFKSVTQEFDKNNADDAANAQEKLTRFLTDLALVSPQD--DIED 554

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             N V +MT+H AKGLE PVVFL+     +F                             
Sbjct: 555 QENTVTLMTLHAAKGLEFPVVFLIGMEQSIFPM--------------------------- 587

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDM 684
                           +EE  RL YVG+TRA  +L +    +       +++ +  + D 
Sbjct: 588 -------ARALNNAEEEEEERRLAYVGITRAQKKLFLTNAMSRVLYGRIQRNPESEFVDE 640

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
           + D   + +  + I+           A   +T                      
Sbjct: 641 IDDKLLDFDSQQSIRTPFGNGGRNNYAQRAATATTYGASRRSHSYASAGKRVAP 694


>gi|197334387|ref|YP_002155339.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11]
 gi|197315877|gb|ACH65324.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11]
          Length = 1208

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 150/916 (16%), Positives = 301/916 (32%), Gaps = 155/916 (16%)

Query: 86   TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
            T++       + + +     + ++I+    +  + +                ++AK++  
Sbjct: 306  TKKGEAPEHAVFKLIDDFLAQPLEIKQPLLSLAIHQCRKTL-----------QQAKEQKN 354

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
             L F+DL+   +    +   +A +  KI ++    LIDE QDT  +Q+ +  +L +D   
Sbjct: 355  WLSFDDLLTQLSQA-TENQDNALLLEKIREQYPVALIDEFQDTDPLQYSIFSTLYQD--- 410

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                      LF +GD KQ+IY+F GA+    ++ +R      T          L  ++R
Sbjct: 411  -----QPQCGLFMIGDPKQAIYAFRGADIFTYIQARRQVADHYT----------LDTNWR 455

Query: 266  STADILTVVDKVFSIPENAQGLSED-STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            STAD+++ V+++F   +      +D     +++      Q              D+Q  P
Sbjct: 456  STADMVSSVNRIFEHGKQPFLYDDDIPFYPVKYNPVNAEQKSW---------ALDNQTQP 506

Query: 325  QQESWTSYF---DSLPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDI 376
                W       + + + S   ++A   A  I  ++     G+  + +  KK+ I+A DI
Sbjct: 507  AMTFWLLESKDGNPVNKTSYQRVMAESTAAQIQTILTGAQQGSAYLQNGEKKQAIKAGDI 566

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             VLVR  K+  L+      L      SV  ++R  +      KD++ L +  ++  D  +
Sbjct: 567  AVLVRTGKEGKLVRE---ALSKQGIASVYLSNRDSVFSSPLAKDVLRLLQAAMTPTDARA 623

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
                L S LF ++ D + +      +                  ++  +          Q
Sbjct: 624  VRSALASSLFAYTADQLHQFNVDEMQ------------------WEQAVNEFRAYRKHWQ 665

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSY---SSLQE 549
                      I+  +   ++ +   G E        + E L  T +   + Y     L +
Sbjct: 666  QRGIMPMLHQIITQQGISERLLVENGGERQLTDLLHIGELLQQTSQTLDSDYGLLRWLSD 725

Query: 550  LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
             ISEL            +  N V+I+T+H +KGLE  +VFL    S     K  +     
Sbjct: 726  SISELNGDSEEQTVRLESERNLVQIVTIHKSKGLEYDLVFLPFVCSYRAIDKKGEVSFYD 785

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHS 668
                      +    S           +  +K    E  RL+YV +TRA     I     
Sbjct: 786  EDNRYSVLDLLKEDDSV----------EKAEKERLAEDLRLIYVALTRAVYACYIGMAPI 835

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                 KK         +       +     +L   + K            P+ T  E  +
Sbjct: 836  TKGISKKPPTGVHLSGLGYLIQQADECNVEELKVCLEKLIAGNSPMVIQSPQTTTDELYQ 895

Query: 729  TIKQ---------LMDEQKIPKKLFS---------PIKNDINEPYILNPSTIDTKGKTNL 770
             ++          L++  K    + S            +   E   L+  + + K    L
Sbjct: 896  EVQDEHIELHANKLIEPVKSNWWMTSYSGLVKQGNHHNDASLELINLDIDSAEDKDDKEL 955

Query: 771  ESLLSD-----NQTFNRGLIIHKLLQVIFTLPEHKRKN---FITSYCTKNAKLWPAKEYK 822
            +           +    G  +H L + +        +     I     K    + A+  +
Sbjct: 956  DLEPERTIFTFPRGARAGTFLHSLFEEVEFTQPITSEENTQIIIKLLEKE--NYDAEWLE 1013

Query: 823  NLLLSITRLLENP------MMTTAMSCDSYSEVSVSGKINCPKKDII------------- 863
             + + + R+L+ P       + +        E+     I      ++             
Sbjct: 1014 VVRIMMQRVLDCPLDGENLRLASKGPTQRLVEMEFLLPIELLNSSLVNKTIAKHDEVSAR 1073

Query: 864  ------------ISGRIDQISISQQNIFIFEYKTHHH--VPQE-------IEHIPYTHIA 902
                        + G ID +   +   ++ ++K++H    P +            + +  
Sbjct: 1074 AGELGFSTVSGMLKGFIDLVFEHEGKYYVLDWKSNHLGDSPDDYGGDALVEAMRDHRYDF 1133

Query: 903  QLSIYEKILKDSYPNK 918
            Q  +Y   L     ++
Sbjct: 1134 QYQLYALALHRFLKSR 1149


>gi|330470059|ref|YP_004407802.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032]
 gi|328813030|gb|AEB47202.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032]
          Length = 797

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 112/713 (15%), Positives = 209/713 (29%), Gaps = 137/713 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + K + P       S  +      +   +         L+        ++  
Sbjct: 92  AAGEMKERVAKLVGPRARLMWVSTFHSACVRILRAEHEH-----AGLKSTFSIYDADDSR 146

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+          P K    + +  +  +LK +L           + F       +  A 
Sbjct: 147 RLMQMVARELDLDP-KRYPARGLAAQVSNLKNELVDP--------EAFAARASGPNERAL 197

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   ++   LDF+DLI+ T  LL+       +     +   H+L+DE Q
Sbjct: 198 ----AEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH---VAETYRRRFRHVLVDEYQ 250

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ +I+ L       +        L  VGD  QSIY+F GA  + +L  +R    
Sbjct: 251 DTNHAQYVLIKELVSGTEGLEPAE-----LCVVGDADQSIYAFRGATIRNILEFERDF-- 303

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I L  ++RST  IL   + V     + +     S               
Sbjct: 304 ------ADARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS--------------- 342

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +            +       A  +A  I  ++         
Sbjct: 343 -------------DAGTGEPIVAYVADTEHAE-------ADWVAREIDRLVDDGET---- 378

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  D+ V  R    + +   +         +           +   ++D +A  R
Sbjct: 379 -----RPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLR 429

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479
            +++ +D +S   +L +P     E     +          +    + A           +
Sbjct: 430 AVVNDDDTVSLRRILNTPRRGIGERAEACVEALAGRDRISFGAALRRAKDAPGISSRAAN 489

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                +  +     +    +P +    +L       +       +    +D L E ++  
Sbjct: 490 GIADFVALLDSARELTVDGTPEEVLEAVLTRSGYLTELEESLDPQDAGRVDNLQELVSVA 549

Query: 537 LRN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                      E+   ++L   + +  L      +      +   V +MT+HTAKGLE P
Sbjct: 550 REYTERIESTGEEGERATLAGFLEQVALVADADQVPTDDPDHQGVVTLMTLHTAKGLEFP 609

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VVFL      VF H                                  L         EE
Sbjct: 610 VVFLTGLEDGVFPH----------------------------------LRSLGDTRELEE 635

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             RL YVG+TRA  +L + +    S   + +       V +      R ++ +
Sbjct: 636 ERRLAYVGITRARQRLYLSRAVTRSAWGQPSYNPPSRFVEELPPELVRWERTE 688


>gi|125624253|ref|YP_001032736.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493061|emb|CAL98025.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071034|gb|ADJ60434.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 758

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 214/700 (30%), Gaps = 145/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53
           G    ++  L ++  + +    V+  N             + ++A +L            
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSLTPRAQDTLIATF 87

Query: 54  -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEF 107
                +   +           +      + +  K I+ +        + K  L    +  
Sbjct: 88  HSMCVRILRRDADHIGYNRNFTIIDPGDQKSLMKRILKEANLDPKKWEPKGLLNAISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D         +      +   +   Y++  +K   +DF+DLI+ T  L  +     
Sbjct: 148 NDLLDETAYEAQITARHPYEMVVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPD-- 205

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +      +  +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 206 -VLAYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRF----------QNICVVGDADQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++   K          ++ L  ++RST  IL   + V       +  
Sbjct: 255 GWRGADMQNILDFEKDYPK--------AKVVLLEENYRSTKTILDAANNVIKNNLKRRPK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                +LW              +  +    +   +       A 
Sbjct: 307 ---------------------ELW-------TQNDEGDKIVYFRAGNEQEE-------AN 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
           +++  IS+ + +               D  VL R    +  I            I     
Sbjct: 332 KVSEIISSGVRSGR----------SYADYAVLYRTNAQSRTIEDSF----VKSNIPYTMV 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                     I+D++A    + +  D++SF  ++  P        + K+         ++
Sbjct: 378 AGTKFYSRKEIRDVIAYLNVVANPADNMSFERIVNEPKRGVGPRALEKLRRFAESRNLSL 437

Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                +  ++      L   ++  +  +    +L      +      
Sbjct: 438 ADSSFDIMLSDIRGKAAGEIYNLAMAFDLLRTHSESSTITELVEEMLERTGYLKALQLMP 497

Query: 522 GNE---VIDVLDEFLNFTLRNEQNS-------------YSSLQELISELEQYPPTIKRAH 565
             E    I+ ++EFL+ T   ++ S              + L +L   L +     +   
Sbjct: 498 SIENQARIENIEEFLSVTKGFDEKSEVPLDEETGEPIIETGLDKLSRFLNEVSLLSETDA 557

Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                ++V +MT+H AKGLE P+VFL+     +F    +                     
Sbjct: 558 YEEESDQVTMMTLHAAKGLEFPIVFLIGMEENIFPLSRVN-------------------- 597

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                               EE  RL YVG+TRA + L +
Sbjct: 598 --------------EDIDELEEERRLAYVGITRAEETLYL 623


>gi|311112208|ref|YP_003983430.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931]
 gi|310943702|gb|ADP39996.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931]
          Length = 957

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 125/750 (16%), Positives = 217/750 (28%), Gaps = 154/750 (20%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   + P   +  +S  + +    +          A  L+         +  
Sbjct: 174 AAAEMRERIQALIGPRAQHMWISTFHSFCVRVLRREAK-----ALGLKSTFTIYDSADS- 227

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L +  + +     K    + +  +   LK +L                Y    +    
Sbjct: 228 QRLLTLIIKELNLDTKKFAPKAVGHRISALKNELVS-----------AEEYSAAAANNPW 276

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  +    LDF+DLI  T  LLKK      I     ++  HIL+DE Q
Sbjct: 277 EKTIAQIYTVYTQRLRAANSLDFDDLIGKTVFLLKKFPE---IANYYRRKFRHILVDEYQ 333

Query: 187 DTSLIQWEVIRSLTEDFFVG-------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           DT+  Q+ ++R L      G             P  L  VGD  QSIY+F GA+ + +  
Sbjct: 334 DTNHAQYALVRELVGAHPQGNAREQGPYPDAPPPGELTVVGDSDQSIYAFRGADIRNITD 393

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +               II L  ++RST +IL+  + V     N +              
Sbjct: 394 FESDYPN--------AHIILLEQNYRSTQNILSAANAVIERNPNRRPKK----------- 434

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW              +              S    AR IA  I  +   
Sbjct: 435 ----------LWTASGEGTKIVGYVAE--------------SEHAEARYIAQEIDRLADE 470

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      I+  D+ +  R    +         L     +           +   IK
Sbjct: 471 ---------HGIKPSDVAIFYRTNAQSR----ALEELLMRAGLPYRVVGGTRFYERKEIK 517

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSED-DIFKICTQRHETETVYEYIQKFANCG- 477
           D +A  R + + +DD+S   +L  P        +         +  + +   +  A    
Sbjct: 518 DALAYLRALTNPDDDVSVRRILNEPKRGIGAKSETVVADYASAQRISFFAAARAAAAEPG 577

Query: 478 ---------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
                    + K+   +K + +L  IA+  S       +L               +    
Sbjct: 578 SVPGLGAAAVKKYAEFVKLMDDLAQIARTESAATTLEAVLEQSGYLAALRESKDIQDESR 637

Query: 526 IDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANH--------------- 569
           ++ L E L+  +  E  +  + L++ +  +                              
Sbjct: 638 VENLSELLDAMVEFEAENPGADLEQFLEHVSLVADADSIPSRGASADGQTPSAAQIAAEA 697

Query: 570 ------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                   + +MT+HTAKGLE PVVFL      +F H+                      
Sbjct: 698 AEAKAQGMITLMTLHTAKGLEFPVVFLTGLEHGLFPHQRALT------------------ 739

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                            +    E  RL YVG+TRA  +L + +    +   KS       
Sbjct: 740 ----------------DEGEMSEERRLAYVGLTRAMQRLYVTRSETRTMWGKSQFNPPSP 783

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            + +        +++            AY 
Sbjct: 784 FLEEIPEELIEWRRLGGFAGFGASGMGAYA 813


>gi|296314732|ref|ZP_06864673.1| DNA helicase II [Neisseria polysaccharea ATCC 43768]
 gi|296838466|gb|EFH22404.1| DNA helicase II [Neisseria polysaccharea ATCC 43768]
          Length = 735

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 99/550 (18%), Positives = 190/550 (34%), Gaps = 120/550 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +ILT  + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILTAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           A+ I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------AQFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   +K  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRNGIPYKIYGGLRFYERQEVKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D + + ++  P        I  + T    +  T+++     A    +K    ++ I  L 
Sbjct: 407 DNALLRVINFPPRGIGARTIENLQTASNEQGITLWQAACN-AGAKATKIAAFVRLIEALR 465

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQ 548
           +        +    IL      + + ++ G   + +D LDE +N  +    E +++ +L 
Sbjct: 466 NQVGQMPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLP 525

Query: 549 E---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +         +++ L        +    A    V++MTVH AKGLE   VFL       F
Sbjct: 526 DNISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRF 585

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                      ++   EE  RL+YV +TRA
Sbjct: 586 PSEMSL----------------------------------AERGGLEEERRLMYVAITRA 611

Query: 659 SDQLIICKHS 668
             +L I    
Sbjct: 612 RKRLYITMAQ 621


>gi|227505537|ref|ZP_03935586.1| superfamily I DNA and RNA helicase [Corynebacterium striatum ATCC
            6940]
 gi|227197834|gb|EEI77882.1| superfamily I DNA and RNA helicase [Corynebacterium striatum ATCC
            6940]
          Length = 1069

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 143/1011 (14%), Positives = 304/1011 (30%), Gaps = 184/1011 (18%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            +           + + + +  V +    +S S   G+ T           +     +E  
Sbjct: 137  VEPTARIIT-DAERYAIAHDVVVNYGGKLSASQSLGHVTDTLLKLAQAMDNGLLDPDEIR 195

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
               +  F    +  +K   ++   + + +++  L K Q     +                
Sbjct: 196  EH-ARIFTATAYDLEKT--SKNGPEFAKEVQNFLNKQQLRVEYL---------------- 236

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                  L    +E +    V+ F + +     L +       +  +  Q  N +++DE Q
Sbjct: 237  -----PLVEALKEEQAARGVITFGEQMAIAAALAESHP---QVGEQQSQRFNVVMLDEYQ 288

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DTS  Q  ++RSL      G        ++ AVGD  QSIY + GA  + +        +
Sbjct: 289  DTSHAQRVLLRSLFGGVRPG-------VSVTAVGDPMQSIYGWRGATAENLAAFVEDFPQ 341

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                 G      +L +S+R+    LT+ + V                   H  +  G   
Sbjct: 342  ---ADGSPAPKDQLTISWRNPQQTLTLANDV-----------------AGHLFAETGGPR 381

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             V    ++  + ++     + ++ +  +   +          +A  + + +         
Sbjct: 382  PVD---ELSPRDNAPEGEVKLAYFASENEERE---------FVANHLKSQLDA------- 422

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                       VLVR  K +PLI+     +     +         L     I+DL+A+  
Sbjct: 423  -CEEPSRFSAAVLVRTNKQSPLISQALDAV----GVPNEIVGLGGLLWQPEIQDLIAVAT 477

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY----------------- 469
             +L  +D  + + +L  P+      D+ ++  ++       +                  
Sbjct: 478  ILLRPQDTNAALRVLTGPMCGLGVKDLKELLARQRNLAGASDESAGRLRWEGGDPVEHLA 537

Query: 470  --------------------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                                       ++++  G+++ + +   +  L   +   S  D 
Sbjct: 538  AQLAELTKEDTSQVLGLADALADLGERERYSAAGLARMEELSAKLRHLRTYSLSKSLSDL 597

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL----EQYPP 559
            F  I      R + ++         LD F +           SL  L+  L    E    
Sbjct: 598  FADIEAMFNIRTEVLANGQLGGTTHLDTFADIVAGF---HGDSLGALLDYLSMAREHEDG 654

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                   A    V+IMTVH +KGLE   V ++   S  +  +    + ++     D  + 
Sbjct: 655  LTPGEVPAVDGRVQIMTVHKSKGLEWKHVCVLHADSSSYKAQAETFLTLVEKAPTDADVI 714

Query: 620  IWIPQSKSRNN---IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
               P +  R+          + ++++ +EE  RL YV MTR    L +          K+
Sbjct: 715  ELEPDAVKRSAFGKACEAYKESVRQNQREEAARLFYVAMTRTESTLTVTGSGTNRKGGKA 774

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL------------ 724
             +  +  +      + + V    +  +  + E +        P                 
Sbjct: 775  QKGPYEYLELLREKHSDLVSHWDVPATPEEAEALTTLREGTFPSLRANPDALRGADLVLD 834

Query: 725  -------------------EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                               E    I++    +     +  P +   ++   L+   I   
Sbjct: 835  AMEELPTLRAGETFELWEQEAGALIEEYAALKAPVVDVELPTELTASDMVSLSSDPIQFA 894

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
             +         N    RG   H  L+  F  P         +  ++N      ++ +  L
Sbjct: 895  RRQRRPVPFKPNAYAKRGTAFHAWLEERFGSP---------ALLSENELPGSDEQPEQDL 945

Query: 826  LSI-TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEY 883
             S+    L +P           +   V         + ++ GR+D +         I ++
Sbjct: 946  ESLKDAFLNSPWAQ-------RTPEYVEAPFEITVGESVVRGRMDAVFREADGTWLIVDW 998

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
            KT                 QL++Y +  +  +  +++     YV +   F 
Sbjct: 999  KTGRPPAGAAMRAAE---IQLAVYAEAWRRVHKAENVRAAFFYVRDGYFFE 1046


>gi|307261810|ref|ZP_07543476.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306868628|gb|EFN00439.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 732

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 114/582 (19%), Positives = 199/582 (34%), Gaps = 121/582 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L + +     I  +  Q    ILIDE QDT+ I
Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L  +             +  VGD+ QSIY + GA+ + + R     QK     
Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ S  E+  G +                     LW
Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    Q +         F+ L +       AR +A  I      +           
Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  I    R+   T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ I+ L    +     +    ++      + +    G +    I+ L+E +  T +   
Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    S L   ++             S + + V +MT+H+AKGLE P VF+V     +
Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          +   +E  RL YVG+TR
Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           A  +L I          K         + +      R  +++
Sbjct: 609 AKKKLTISYAELRRLYGKEEHHIASRFIAELPEQHIREVRLR 650


>gi|223041651|ref|ZP_03611848.1| DNA helicase II [Actinobacillus minor 202]
 gi|223017515|gb|EEF15929.1| DNA helicase II [Actinobacillus minor 202]
          Length = 731

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 115/604 (19%), Positives = 210/604 (34%), Gaps = 117/604 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I T ++LK + +   I  +  Q   HILIDE QDT+ I
Sbjct: 175 EIYQLYQDACDRAGLLDFAELLIRTYEMLKNQPL---ILQRYQQRFQHILIDEFQDTNNI 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  L                +  VGD+ QSIY + GA+ + + R  +   +     
Sbjct: 232 QYDLIHLLAGQ----------HGKVMIVGDDDQSIYGWRGAQVENIQRFLKDYDQ----- 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ +  +N  G    +           G    V+++
Sbjct: 277 ---AQTIRLEQNYRSTGHILASANELIANNDNRLGKKLWTE---------SGDGDPVEIY 324

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  +                          AR +A  I      +           
Sbjct: 325 CAFNELDE--------------------------ARFVASQIQQWKEDEG---------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 349 SFSECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLISNR 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  I    R  + T+++ IQ      + +    S     
Sbjct: 405 QDDAAFERVINTPPRGIGERTLETIRQLTRTRSITLWQAIQVAIQEEQLSGRAASALLRF 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
           ++ I+ L +  +  S  D    ++      + +    G++    ID L+E +  T +   
Sbjct: 465 VELINALDNETEQMSLADQTDFVIRKSGLYEMYKQEKGDKGEVRIDNLEELVTATKQFTP 524

Query: 541 QNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +    L  L + L            S + + V +MT+H+AKGLE P VF+V     +F 
Sbjct: 525 PDEAEDLTPLTAFLTHASLEAGDAQASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGIFP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                    +   +E  RL YVG+TRA 
Sbjct: 585 SGMS-----------------------------------HDEGRLQEERRLAYVGITRAK 609

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L I          K  +      + +      R  +++   +       +  ++   P
Sbjct: 610 KKLTISYAELRRLYGKEERHIPSRFIAELPEEHIREIRLRGNINRAASFASSSPFAKTAP 669

Query: 720 ENTP 723
           + T 
Sbjct: 670 KTTA 673


>gi|15673102|ref|NP_267276.1| ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724080|gb|AAK05218.1|AE006344_7 ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406669|gb|ADZ63740.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lactococcus
           lactis subsp. lactis CV56]
          Length = 758

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 214/700 (30%), Gaps = 145/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53
           G    ++  L ++  + +    V+  N             + ++A +L            
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSLTPRAQDTLIATF 87

Query: 54  -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEF 107
                +   +           +      + +  K I+ +        + K  L    +  
Sbjct: 88  HSMCVRILRRDADHIGYNRNFTIIDPGDQKSLMKRILKEANLDPKKWEPKGLLNAISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D         +      +   +   Y++  +K   +DF+DLI+ T  L  +     
Sbjct: 148 NDLLDESAYEAQTSARHPYEMVVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPD-- 205

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +      +  +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 206 -VLSYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRF----------QNICVVGDADQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++   K          ++ L  ++RST  IL   + V       +  
Sbjct: 255 GWRGADMQNILDFEKDYPK--------AKVVLLEENYRSTKTILDAANNVIKNNLKRRPK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                +LW              +  +    +   +       A 
Sbjct: 307 ---------------------ELW-------TQNDAGDKIVYFRAGNEQEE-------AN 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
           +++  I++ I +               D  VL R    +  I            I     
Sbjct: 332 KVSEIITSGIRSGR----------SYADYAVLYRTNAQSRTIEDSF----VKSNIPYTMV 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                     I+D++A    + +  D++SF  ++  P        + K+         ++
Sbjct: 378 AGTKFYSRKEIRDVIAYLNVVANPADNMSFERIVNEPKRGVGPGALEKLRRFADSRGLSL 437

Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                +  ++      L   ++  +  +    +L      +      
Sbjct: 438 ADSSFDIMLSDIRGKAAGEIYNLAMAFDLLRTHSESSTITELVEEMLERTGYVKALQMMP 497

Query: 522 GNE---VIDVLDEFLNFTLRNEQNS-------------YSSLQELISELEQYPPTIKRAH 565
             E    I+ ++EFL+ T   ++ S              + L +L   L +     +   
Sbjct: 498 SIENQARIENIEEFLSVTKGFDEKSEIPLDEETGEPIVETGLDKLSRFLNEVSLLSETDA 557

Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                ++V +MT+H AKGLE P+VFL+     +F    +                     
Sbjct: 558 YEEESDQVTMMTLHAAKGLEFPIVFLIGMEENIFPLSRVN-------------------- 597

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                               EE  RL YVG+TRA + L +
Sbjct: 598 --------------EDIDELEEERRLAYVGITRAEETLYL 623


>gi|281491616|ref|YP_003353596.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375334|gb|ADA64847.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis
           KF147]
          Length = 758

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 103/700 (14%), Positives = 214/700 (30%), Gaps = 145/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53
           G    ++  L ++  + +    V+  N             + ++A +L            
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSLTPRAQDTLIATF 87

Query: 54  -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEF 107
                +   +           +      + +  K I+ +        + K  L    +  
Sbjct: 88  HSMCVRILRRDADHIGYNRNFTIIDPGDQKSLMKRILKEANLDPKKWEPKGLLNAISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D         +      +   +   Y++  +K   +DF+DLI+ T  L  +     
Sbjct: 148 NDLLDESAYEAQTSARHPYEMVVARVYKIYQKELRKAESMDFDDLIMQTLRLFDENPD-- 205

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +      +  +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 206 -VLSYYQGKFQYIHVDEYQDTNHAQYQLVKLLASRF----------QNICVVGDADQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++   K          ++ L  ++RST  IL   + V       +  
Sbjct: 255 GWRGADMQNILDFEKDYPK--------TKVVLLEENYRSTKTILDAANNVIKNNLKRRPK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                +LW              +  +    +   +       A 
Sbjct: 307 ---------------------ELW-------TQNDAGDKIVYFRAGNEQEE-------AN 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
           +++  I++ I +               D  VL R    +  I            I     
Sbjct: 332 KVSEIITSGIRSGR----------SYADYAVLYRTNAQSRTIEDSF----VKSNIPYTMV 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                     I+D++A    + +  D++SF  ++  P        + K+         ++
Sbjct: 378 AGTKFYSRKEIRDVIAYLNVVANPADNMSFERIVNEPKRGVGPGALEKLRRFADSRGLSL 437

Query: 467 YEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                +  ++      L   ++  +  +    +L      +      
Sbjct: 438 ADSSFDIMLSDIRGKAAGEIYNLAMAFDLLRTHSESSTITELVEEMLERTGYVKALQMMP 497

Query: 522 GNE---VIDVLDEFLNFTLRNEQNS-------------YSSLQELISELEQYPPTIKRAH 565
             E    I+ ++EFL+ T   ++ S              + L +L   L +     +   
Sbjct: 498 SIENQARIENIEEFLSVTKGFDEKSEIPLDEETGEPIVETGLDKLSRFLNEVSLLSETDA 557

Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                ++V +MT+H AKGLE P+VFL+     +F    +                     
Sbjct: 558 YEEESDQVTMMTLHAAKGLEFPIVFLIGMEENIFPLSRVN-------------------- 597

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                               EE  RL YVG+TRA + L +
Sbjct: 598 --------------EDIDELEEERRLAYVGITRAEETLYL 623


>gi|261213182|ref|ZP_05927465.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341]
 gi|260837600|gb|EEX64294.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341]
          Length = 723

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 116/690 (16%), Positives = 219/690 (31%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++ T +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRTLELLRGN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +                + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARIENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLDTIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N               ++ I+ L         H      +      + +    G 
Sbjct: 441 SIGLLNDQVLTGRAAGALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLFEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +    I+ L+E +  T + E+      +  L + L        +     + + V++MT+H
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEAQEMTTLTAFLTHAALEAGEGQADEHDDAVQLMTLH 560

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P VF+V     +F  +                                     
Sbjct: 561 SAKGLEFPQVFMVGVEEGMFPSQMS----------------------------------A 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +    EE  RL YVGMTRA  +L I    
Sbjct: 587 EEAGRLEEERRLCYVGMTRAMQKLYITYAE 616


>gi|302536344|ref|ZP_07288686.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
 gi|302445239|gb|EFL17055.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
          Length = 825

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 124/762 (16%), Positives = 233/762 (30%), Gaps = 133/762 (17%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P      VS  +      +   +  +         +       +  
Sbjct: 125 AAGEMKERVEGLVGPRANAMWVSTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 179

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P+K    +  N K  +LK +L                   F+ T   
Sbjct: 180 RLMALVCRDLDLDPKK-FPPKSFNAKISNLKNELIDEDA------FAAQAADGFEKT--- 229

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+D+I+ T  LL+       +     +   H+L+DE Q
Sbjct: 230 ---LAQAYAMYQGRLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 283

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L    +        P  L  VGD  QSIY+F GA  + +L+ +     
Sbjct: 284 DTNHAQYTLVRELVGPGYP----DLPPAELCVVGDADQSIYAFRGATIRNILQFEEDY-- 337

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                 +  + I L  ++RST  IL+  + V    EN +  +                  
Sbjct: 338 ------KDATTILLEQNYRSTQTILSAANAVIERNENRRAKN------------------ 373

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW        +        + +  +           A+ +A  I  +          
Sbjct: 374 ---LW------TQAGTGAVITGYVADTEHDE--------AQFVADEIDRLTDAG------ 410

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +A D+ +  R    + +   +         +           +   ++D++A  R
Sbjct: 411 ---DAKAGDVAIFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 463

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--H 483
            + + ED++    +L  P     E     I      E  T  + +++         +  +
Sbjct: 464 VLANPEDNVPLRRILNVPKRGIGERAEAMIDALAMREKITFPQALRRVDEAFGMAARSTN 523

Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
            +K  + L+   +        P      +L       +  +    +    I+ L E    
Sbjct: 524 AVKRFNVLMEELRTIVDSGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 583

Query: 536 TLRNEQ----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            L  EQ    ++  +L E + +  L      I    +     + +MT+HTAKGLE PVVF
Sbjct: 584 ALEFEQARDESNPGTLAEFLEQVALVADSDQIPDEDTDGSGVITLMTLHTAKGLEFPVVF 643

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L      VF H                                       +    EE  R
Sbjct: 644 LTGMEDGVFPHMRALG----------------------------------QTKELEEERR 669

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA ++L + + S  S     +       + +      + K+            
Sbjct: 670 LAYVGITRARERLYLTRSSMRSAWGTPSYNPPSRFLEEIPAEYLQWKRTGAAQKPAGPVR 729

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            +   S+    +     E  +                  +  
Sbjct: 730 GSGYGSSSGKSSFGTSPEAFLSSSRTRSGPSGFATRRAADKP 771


>gi|239929399|ref|ZP_04686352.1| ATP-dependent DNA helicase II [Streptomyces ghanaensis ATCC 14672]
 gi|291437725|ref|ZP_06577115.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340620|gb|EFE67576.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 835

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 122/769 (15%), Positives = 230/769 (29%), Gaps = 142/769 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 183

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + K  +LK +L   +D              F+ T   
Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELVDEED------FAARAADGFEKT--- 233

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 234 ---LAQAYALYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS-----PRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           DT+  Q+ ++R L        +   +     P  L  VGD  QSIY+F GA  + +L+ +
Sbjct: 288 DTNHAQYALVRELVGSSEQPVDAPGNAGETAPAELCVVGDADQSIYAFRGATIRNILQFE 347

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         + I L  ++RST  IL   + V    E+ +  +             
Sbjct: 348 EDYP--------DATTILLEQNYRSTQTILGAANAVIERNESRRPKN------------- 386

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW        +     + +         +       A+ +A  I  +     
Sbjct: 387 --------LW-------TNAGAGARITGYVADTEHDE-------AQFVADEIDRLTDAGQ 424

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                     +A D+ V  R    + +   +         +           +   ++D+
Sbjct: 425 ---------AKAGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDV 471

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480
           +A  R + + ED +    +L  P     +     I    + E  +  + + +        
Sbjct: 472 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMIDALAQRERISFPQALGRVDEAYGMA 531

Query: 481 FQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
            +           + +L  IA+  + P      +L       +  +    +    I+ L 
Sbjct: 532 ARSVNAVKRFNTLMEDLRTIAESGAGPATVLEAVLERTGYLAELQASTDPQDETRIENLQ 591

Query: 531 EFLNFTLRNEQNSYSS------------LQELISE--LEQYPPTIKRAHSANHNEVRIMT 576
           E     L  EQ                 L + + +  L      I          + +MT
Sbjct: 592 ELAAVALEFEQGRGEGAVPPGATAPGGTLADFLEQVALVADSDQIPDEDEDGSGVITLMT 651

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +HTAKGLE PVVFL      VF H                                  L 
Sbjct: 652 LHTAKGLEFPVVFLTGMEDGVFPH----------------------------------LR 677

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +    EE  RL YVG+TRA ++L + + +  S   + +       + +        K
Sbjct: 678 ALGQTKELEEERRLAYVGITRARERLYLTRSTMRSAWGQPSYNPPSRFLEEIPATHLEWK 737

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +    +            S     +       +        + P    +
Sbjct: 738 RTGGGSPAASGPVSGVAASLSSSRSRSSAAGASGFATRRAAEQPAASLA 786


>gi|118581858|ref|YP_903108.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
 gi|118504568|gb|ABL01051.1| ATP-dependent DNA helicase PcrA [Pelobacter propionicus DSM 2379]
          Length = 762

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 96/595 (16%), Positives = 183/595 (30%), Gaps = 117/595 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + A Y+E  +K   LDF D++I T  LL++      +R +  +    I++DE QDT+ +
Sbjct: 170 QIYAAYQERLRKCNALDFGDMLIQTVRLLEQFPE---VRQRCQERFQWIMVDEYQDTNPV 226

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ +IR L  +           R L  VGD+ QSIYS+ GA+ + +L  ++         
Sbjct: 227 QYRLIRLLAGE----------RRNLCVVGDDDQSIYSWRGADIRNILEFEKDFP------ 270

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +++ L  ++RST  IL     V S     +G +  +                    
Sbjct: 271 --DVAVVRLEQNYRSTTTILKAAGAVVSRNIGRRGKTLWTENP----------------- 311

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +        D           AR +A  I ++              I
Sbjct: 312 ----------EGEKIRYHRVESDREE--------ARLVAREIVSLRSRG----------I 343

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +++ V  R    + L+            +             + +KD++A  R + + 
Sbjct: 344 PLEEMAVFYRTNAQSRLVEEALVSEA----LPYHIVGGVRFYARMEVKDILAYLRILDNP 399

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANC------GISKFQHV 484
            D++S   ++  P        I +I  +      + Y  + + A          ++    
Sbjct: 400 ADEISLKRIINVPSRGIGGATIDRISQRVASSGASFYAAMAECAGSGLLGSGPRARVASF 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRN-E 540
           +  +     +       +    ++       +          E ++ L++ L       E
Sbjct: 460 VDMMERFREMVALRGLPELCQTVMEESGYLARLRESRDQEDSERLENLEQLLAAMEEFCE 519

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +   + L   + ++                 V +MT+H AKGLE   VF++    ++F H
Sbjct: 520 KEPQAGLSAFLEQVSLVSDLE--QGGQGKPSVTLMTLHAAKGLEFRAVFMIGMEERLFPH 577

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                       EE  RL YVGMTRA +
Sbjct: 578 VRALDDLDG----------------------------------MEEERRLCYVGMTRARE 603

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           +L +          +         + D                +           
Sbjct: 604 RLYLLNTRRRYLFGQEQCNPPSRFLKDIPAGLLDDGGEPSQPGLGFRSAAEQAGR 658


>gi|303250592|ref|ZP_07336789.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307252961|ref|ZP_07534849.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650580|gb|EFL80739.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306859599|gb|EFM91624.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 732

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 112/551 (20%), Positives = 192/551 (34%), Gaps = 121/551 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L + +     I  +  Q    ILIDE QDT+ I
Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFQDKP---PILQRYQQRFRQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L  +             +  VGD+ QSIY + GA+ + + R     QK     
Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ S  E+  G +                     LW
Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    Q +         F+ L +       AR +A  I      +           
Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  I    R+   T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ I+ L    +     +    ++      + +    G +    I+ L+E +  T +   
Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    S L   ++             S + + V +MT+H+AKGLE P VF+V     +
Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGET--QASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGI 583

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          +   +E  RL YVG+TR
Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608

Query: 658 ASDQLIICKHS 668
           A  +L I    
Sbjct: 609 AKKKLTISYAE 619


>gi|163868698|ref|YP_001609910.1| DNA helicase II [Bartonella tribocorum CIP 105476]
 gi|161018357|emb|CAK01915.1| DNA helicase II [Bartonella tribocorum CIP 105476]
          Length = 787

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 107/579 (18%), Positives = 191/579 (32%), Gaps = 108/579 (18%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + L   Y+   K     DF DL++++  + +       I  +   +  +IL+DE QDT
Sbjct: 216 MGRELYRSYQNRLKDLNACDFGDLLLHSISIFQHNPD---ILREYHSQFRYILVDEYQDT 272

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+  +R L +              L  VGD+ QSIY + GA+ + +LR ++      
Sbjct: 273 NTAQYLWLRLLAQHP------QDQNVNLCCVGDDDQSIYGWRGAKVENILRFEKDFP--- 323

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   II L  ++RST+ IL     + +  E   G    S                 
Sbjct: 324 -----SAKIIRLERNYRSTSHILKAASHLIAHNEERLGKVLFSAQI-------------- 364

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                       +   ++    S +DS  +       AR I   I     +    ++   
Sbjct: 365 ------------KSEEEKVKIHSAWDSAEE-------ARAIGEEIERAQQSGHALNH--- 402

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  + +LVR              L     ++          + + I+D MA  R +
Sbjct: 403 -------MAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDAMAYLRVV 451

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKF 481
           +   DDL+F  ++ +P     +  +  +    R    +++          +      S  
Sbjct: 452 VHPADDLAFERIINTPKRGIGDATLRILYESARARAVSLFSAAADIIETDELKPKARSAL 511

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           + +I+      ++ Q     +   +IL        ++     E    L+         EQ
Sbjct: 512 RSLIENFRRWQNMLQCTPHRELAEIILDDSGYTTMWLEDRSPEAPTRLENLKEMIRSIEQ 571

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 + L + LE     ++  ++ N + V IMT+H+AKGLE   VFL      +F H+
Sbjct: 572 -----FENLQNFLEHVALVMETENNENMDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQ 626

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +S  EE  RL YVG+TRA   
Sbjct: 627 RSLD--------------------------------EGGRSGLEEERRLAYVGLTRAKKH 654

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           L I   SN               + +       V  ++ 
Sbjct: 655 LHIWFVSNRRVHGLWQSALPSRFLDELPAEHIEVIAMET 693


>gi|255973804|ref|ZP_05424390.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2]
 gi|255966676|gb|EET97298.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2]
          Length = 746

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 216/635 (34%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 25  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 84

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 85  FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 144

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 145 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 202

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 203 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 251

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 252 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 302

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 303 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 328

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 329 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 375

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 376 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 435

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L+    + +  +     L     R+  +++  
Sbjct: 436 EAAQNVDLANISGKAGKELGNFGMMIQDLMKTVPYLTITELVKETLQRSGYREALMAQNN 495

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 496 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 553

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 554 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 588


>gi|313674951|ref|YP_004052947.1| uvrd/rep helicase [Marivirga tractuosa DSM 4126]
 gi|312941649|gb|ADR20839.1| UvrD/REP helicase [Marivirga tractuosa DSM 4126]
          Length = 754

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 99/550 (18%), Positives = 186/550 (33%), Gaps = 115/550 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +   ++  +DF+DL+ NTN L +       +  K  Q   +++IDE QDT++ 
Sbjct: 176 AIYKEYVQRCFRSGAMDFDDLLFNTNVLFRDH---LDVLNKYQQRFKYVMIDEFQDTNIS 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ + + L+             + +  VGD+ QSIY+F GA  + +L  ++         
Sbjct: 233 QYLITKRLSA----------VNQNICIVGDDAQSIYAFRGANIQNILNFEKDYP------ 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RST +I+   + V             +    +   ++      V L 
Sbjct: 277 --DLRVIKLEQNYRSTQNIVNAANSVILKN---------AAQLKKKVWTQNDDGELVHLI 325

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           +      +                           R +A +I         F +   + +
Sbjct: 326 KSTSDNEEG--------------------------RLVASSI---------FEDKNNKKL 350

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + KD  +L R    +  +    R       I               IKDL+A  RF ++ 
Sbjct: 351 ENKDFAILYRTNSQSRAMEEALR----KSNIPYRIYGGLSFYQRKEIKDLLAYLRFTINH 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-----VYEYIQKFANCGISKFQHVIK 486
            D+ SF  ++  P        + KI     E +      + +  +   N   +   + + 
Sbjct: 407 NDEQSFRRIINLPKRGIGASSVDKIVVAAFENDLGIWDVLQKSQRVLPNRAANAVDNFVT 466

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---E 540
            I       +    +D    I       ++       E     + + E LN        E
Sbjct: 467 LIKTFKIRLEKADAYDTAAFIAKQSGLLKELYDDKTIEGLNRYENVQELLNAIKEFVDDE 526

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           Q    SL+  I+++             N + V +MT+H+AKGLE   VF+V     +F  
Sbjct: 527 QQEDKSLEAFIADVALLTDADNEDKDNN-DHVNLMTIHSAKGLEFKHVFIVGMEEDLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           + +                                     ++  EE  RL YV +TRA +
Sbjct: 586 QMMLNS----------------------------------RADLEEERRLFYVALTRAME 611

Query: 661 QLIICKHSNT 670
           ++ +      
Sbjct: 612 KVTLSYALTR 621


>gi|52629180|gb|AAU27921.1| DNA dependent ATPase I and helicase II [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 730

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 109/580 (18%), Positives = 191/580 (32%), Gaps = 117/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+  + + V+DF +L++ T++LL+  +    I     +    IL+DE QDT+ I
Sbjct: 181 AIYKAYEDVCQTSGVIDFAELLLRTHELLRDNEE---ILAHYRERFQAILVDEFQDTNTI 237

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             + AVGD+ QSIY + GA+ + + +            
Sbjct: 238 QYAWIRLLAGDHTA----------VLAVGDDDQSIYGWRGAKVENIQQFVHDF------- 280

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +   II L  ++RSTA IL   + +        G                      +LW
Sbjct: 281 -KDTHIIRLEQNYRSTAMILNAANALILNNSTRMGK---------------------ELW 318

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   +    ++    S F+ L +       AR +   I   +              
Sbjct: 319 -------TAGSEGEKILVYSAFNELDE-------ARFVTERIGMELNQG----------A 354

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A +I VL R    + ++            I+          D   IKD +A  R +++ 
Sbjct: 355 SADEIAVLYRSNAQSRVLEEAL----LRAGIAYRIYGGVRFFDRAEIKDTLAYLRLLVNP 410

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++  P     E  + ++    R E  +++   +           G       
Sbjct: 411 NDDTAFERVVNFPTRGIGEKTLDEVRQYARAEQCSLWGASKGILQSTGLGQRGSLALAKF 470

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFISRFGNEVIDVLDEFLNFTLRN-- 539
           I  I +L  +       +  + ++          +         +D L E +N   +   
Sbjct: 471 IDLIEKLQVVVANKELDEQISDVIQHSGLYAHFSKIKGDKSESRVDNLQELINAAKQFRY 530

Query: 540 EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E +    L  + S L              +   V +MT+H AKGLE P+VFLV     +F
Sbjct: 531 EYDEEEELPLVNSFLAHASLESGELQADEHERSVHLMTLHAAKGLEFPIVFLVGMEEGIF 590

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +   +                                       EE  RL YVGMTRA
Sbjct: 591 PGRQSLEEPG----------------------------------RLEEERRLCYVGMTRA 616

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +L++          +         + +         ++
Sbjct: 617 MRKLVLSYAEVRRQYGREEYHRSSRFLREIPQQFLDEVRV 656


>gi|325696764|gb|EGD38652.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK160]
          Length = 762

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 96/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLIYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEMSLLDASANILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +  D    +L          ++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMLLDLRERLDDYTVTDLVEAVLEKTGYAASLAAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            ++     +  S L +L   L +              +EV +MT+H AKGLE PVVFL+ 
Sbjct: 516 FDESPDNPSDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLIG 575

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF      +                                              Y
Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           VG+TRA   L +   ++     K+N       + +   +    + +    
Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLNYQGLARPA 651


>gi|197334239|ref|YP_002154837.1| DNA helicase II [Vibrio fischeri MJ11]
 gi|197315729|gb|ACH65176.1| DNA helicase II [Vibrio fischeri MJ11]
          Length = 733

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 117/691 (16%), Positives = 224/691 (32%), Gaps = 132/691 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   Q S  +             +  + + L   S        
Sbjct: 30  GAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTNKAAAEMRGRIEELMHGSAGGMWNGT 89

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
           F              + L   F       Q+ ++ + I  ++ D K    +    FI  +
Sbjct: 90  FHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKAQNLDDKNWPARQAAWFINGK 149

Query: 112 --DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +    +++             + + Y+EA  +  ++DF ++++  ++LL+       I
Sbjct: 150 KDEGLRPHQINSFNDPITQTWLKVYSAYQEACDRAGLVDFAEILLRAHELLRDH---KHI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R        HIL+DE QDT+ IQ+  +R +            S   +  VGD+ QSIY +
Sbjct: 207 REHYQARFKHILVDEFQDTNNIQYAWLRMMAG----------SDCDVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                  I L  ++RSTA+IL   +++ S      G   
Sbjct: 257 RGAQIENIQKFLDEF--------VGAKTIRLEQNYRSTANILNAANELISNNTERMGKK- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW                S  S ++ L +       AR  
Sbjct: 308 --------------------LW-------TEGVEGDLISIYSAYNELDE-------ARFA 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     D   L R    + ++            +       
Sbjct: 334 VGKIKEWRDNGGALE----------DSAFLYRNNAQSRVLEEAL----IQAGLPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
               +   IKD ++  R + ++ DD +F  ++ +P     +  +  +    R    T+++
Sbjct: 380 MRFFERQEIKDALSYLRLMNNRNDDAAFERVVNTPTRGLGDKTLETVRFAARERGATMWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                                 I+ I+ L    + C  H+    ++ +      +    G
Sbjct: 440 ASIALIEEQVLPGRAAGALSRFIELINALEDDTRDCRLHEQTDQVIKSSGLFAMYEQEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    I+ L+E +  T + E+      + +L + L        +       + V++MT+
Sbjct: 500 EKSKARIENLEELVTATRQFEKPEEAEEMTDLTAFLTHAALEAGEGQADEFEDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPLVFMVGVEEGMFPSQMS---------------------------------- 585

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             +    EE  RL YVGMTRA ++L I    
Sbjct: 586 AEEAGRLEEERRLCYVGMTRAMEKLYITYAE 616


>gi|73748886|ref|YP_308125.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1]
 gi|73660602|emb|CAI83209.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1]
          Length = 738

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 108/634 (17%), Positives = 205/634 (32%), Gaps = 120/634 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   YE+  K+N  LDF+DL++    L K+      +     +   H+++DE QD
Sbjct: 167 EMVGRVYELYEKRLKQNKALDFDDLLLKVVQLFKQYPE---VLAGYQERYLHVMVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+L+Q+E+++ L+  +          R +  VGD  QSIYS+  A+ + V   +      
Sbjct: 224 TNLVQYELVKMLSAKY----------RNICVVGDPDQSIYSWRSADLRNVFNFETD---- 269

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST +IL     V +     + +S                   
Sbjct: 270 ----NPGAKVVLLEQNYRSTKNILEAASCVIAPNSGRKPIS------------------- 306

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + Q  +    F+   +       A+ +   I  +           
Sbjct: 307 --LW-------TENESGQPIAVVETFNEQEE-------AQFVVSEIEKLTR--------- 341

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI +L R    +  +          Y +               +KD++A  R 
Sbjct: 342 YEKFSPGDIAILYRTNAQSRALEEAF----IRYGMPYRLVSGTRFYQRREVKDIVAYLRL 397

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480
           + + +D +S   ++  P        +  +    R +  ++Y+ +   ++    K      
Sbjct: 398 LQNPQDSVSLQRVINIPTRGIGAKTLSDLAQFAREQDISLYQSLINLSDENAPKPPIPSR 457

Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
                      +  LI  AQ     +    +L     R+    S  G E  D + E    
Sbjct: 458 GLKPLIDFGALLKSLIIDAQTLPLLNLLDRLLEGISYREFLFASEDGEERWDNILELRTV 517

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             + ++      + L + LE               + V ++T+H AKGLE PVVF+V   
Sbjct: 518 AQQYQEILPP--EGLSAFLESVALVSDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGME 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H                                         +  +E  RL YVG
Sbjct: 576 EGVLPHNRSFDDP----------------------------------AQMQEERRLCYVG 601

Query: 655 MTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           +TRA  +L + +    +   +   N+ + Y           R K+  L         +  
Sbjct: 602 VTRAKKRLYLVRAFRRSLMGQSNVNEPSRYLKDIPQSITKGREKQPLLGQQTPGQAVLPV 661

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                     P++   +    + E +   ++  P
Sbjct: 662 IKQHVQSAGMPVKSAPSPAPKLLELEAGDRVLHP 695


>gi|258616015|ref|ZP_05713785.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO]
          Length = 706

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 117/732 (15%), Positives = 237/732 (32%), Gaps = 138/732 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 91  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +A    A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKEFQYNQCMDFDDLIMNTIRLFEEHPDS-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +  +
Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +        R 
Sbjct: 310 ---------------------LW-------TENKEGNKITYYRADNERDET-------RF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I ++              D  +L R    + ++            I      
Sbjct: 335 IVDRMQEEIRSNHR---------NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VY 467
                D   IKD++A    +++ +D +SF  ++ SP        I K+ +     E  + 
Sbjct: 382 GHKFYDRKEIKDILAYLNVLVNPQDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLL 441

Query: 468 EYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q      I      +     + I E+  +  + +  +    +L      +    +  
Sbjct: 442 EAAQNVDLANIGGKAGQQLGAFGEMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNT 501

Query: 523 NEVI---DVLDEFLNFT----LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHN 570
            E     + L+EFL  T     + EQ +         +L     +    +       + +
Sbjct: 502 LEAQARIENLEEFLTVTQEFDKQFEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDAS 561

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H AKGLE PVVFL+     VF                                
Sbjct: 562 QVTLMTLHAAKGLEFPVVFLIGLEEGVFPLSRALMEESELEEERRL-------------- 607

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA + L +    + +   ++        V +   
Sbjct: 608 --------------------AYVGITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQ 647

Query: 691 NDERVKKIKLTN 702
               ++ ++ T 
Sbjct: 648 ELLEIEGMRPTP 659


>gi|298208568|ref|YP_003716747.1| putative helicase [Croceibacter atlanticus HTCC2559]
 gi|83848491|gb|EAP86360.1| putative helicase [Croceibacter atlanticus HTCC2559]
          Length = 773

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 114/705 (16%), Positives = 222/705 (31%), Gaps = 132/705 (18%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150
           K   +  ++   ++  I ++  F   ++ ++   +       +   Y E   K   +DF+
Sbjct: 136 KYKQVYSRISSYKNSLITVKAYFQNPELIEADAMAKRPRLGDIYKEYVERCFKAGAMDFD 195

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN+LL +      +  K      +IL+DE QDT+  Q+ ++R+L++ F       
Sbjct: 196 DLLLRTNELLNRFPE---VLNKYQNRFKYILVDEYQDTNHSQYLIVRALSDKF------- 245

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              + +  VGD+ QSIY+F GA    +L  +R              +  L  ++RST +I
Sbjct: 246 ---QNICVVGDDAQSIYAFRGANINNILNFQRDYDN--------VEMYRLEQNYRSTKNI 294

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + +    +                           +W        +   P+     
Sbjct: 295 VNAANSIIDKNKTKLDKV---------------------VW------TANDEGPKIRVNR 327

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
              D            R +A +I         F N  +  ++     +L R    +  + 
Sbjct: 328 LINDGEEG--------RFVASSI---------FENKMEHQLRNGQFAILYRTNAQSRAME 370

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD+++  R I +  D+ +   ++  P     +
Sbjct: 371 DALR----KKDIPYRIYGGLSFYQRKEIKDVISYLRLIANPNDEEALKRVINYPTRGIGQ 426

Query: 451 DDIFKICTQRHE-TETVYEYIQKFAN-------CGISKFQHVIKYIHELIHIAQFCSPHD 502
             I K+    +    +++E +               +K ++ +  IH    + +      
Sbjct: 427 TTIDKVAIAANHYKRSMFEVMANIDKVDIGVNTGTKNKLKNFVNMIHHFQILNKESDAFS 486

Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS------SLQELISE 553
               +       Q        E    I+ ++E LN      +          SL E + +
Sbjct: 487 VAEAVAKKTGLIQDLKKDGTPEGVARIENVEELLNGIKDFVEGQVELADATGSLAEFLED 546

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +     T       + + V +MT+H AKGLE P V++V     +F               
Sbjct: 547 IALA--TDMDKEVGDDDRVALMTIHLAKGLEFPYVYIVGMEEDLFPS------------- 591

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                 +    +S  EE  RL YV +TRA  Q  +    +    
Sbjct: 592 ---------------------AMSMNTRSELEEERRLFYVALTRAEKQAYLTYTQSRYRW 630

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K         + +          I   +   K       W            +   +Q 
Sbjct: 631 GKLIDAEPSRFIEEIDEQY-IDWMIPQDDYKYKPLVSPDLWGDVD--------KSKFRQT 681

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
             ++  P     P    + +   L P+    + +      LS+ Q
Sbjct: 682 KPKKGTPPPSHKPTDEQLRKLRRLRPTDASKEVQKAAPISLSEGQ 726


>gi|240950109|ref|ZP_04754404.1| DNA-dependent helicase II [Actinobacillus minor NM305]
 gi|240295410|gb|EER46179.1| DNA-dependent helicase II [Actinobacillus minor NM305]
          Length = 731

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 115/604 (19%), Positives = 210/604 (34%), Gaps = 117/604 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I T ++LK + +   I  +  Q   HILIDE QDT+ I
Sbjct: 175 EIYQLYQDACDRAGLLDFAELLIRTYEMLKNKPL---ILQRYQQRFQHILIDEFQDTNNI 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  L                +  VGD+ QSIY + GA+ + + R  +  ++     
Sbjct: 232 QYDLIHLLAGQ----------HGKVMIVGDDDQSIYGWRGAQVENIQRFLKDYEQ----- 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ +  +N  G    +           G    V+++
Sbjct: 277 ---AQTIRLEQNYRSTGHILASANELIANNDNRLGKKLWTE---------SGDGDPVEIY 324

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  +                          AR +A  I      +           
Sbjct: 325 CAFNELDE--------------------------ARFVAAQIQQWKEDEG---------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 349 SFSECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLISNR 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  I    R  + T+++ IQ      + +    S     
Sbjct: 405 QDDAAFERVINTPPRGIGERTLETIRQLTRTRSITLWQAIQVAIQEEQLSGRAASALLRF 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
           ++ I+ L    +  S  D    ++      + +    G++    ID L+E +  T +   
Sbjct: 465 VELINALDSETEQMSLADQTDFVIRKSGLYEMYKQEKGDKGEVRIDNLEELVTATKQFTP 524

Query: 541 QNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +    L  L + L            S + + V +MT+H+AKGLE P VF+V     +F 
Sbjct: 525 PDEAEDLTPLTAFLTHASLEAGEAQASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGIFP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                    +   +E  RL YVG+TRA 
Sbjct: 585 SGMS-----------------------------------HDEGRLQEERRLAYVGITRAK 609

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L I          K  +      + +      R  +++   +       +  ++   P
Sbjct: 610 KKLTISHAELRRLYGKEERHIPSRFIAELPEEHIREIRLRGNINRAASFASSSPFAKTAP 669

Query: 720 ENTP 723
           + T 
Sbjct: 670 KTTA 673


>gi|324993214|gb|EGC25134.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK405]
 gi|327461484|gb|EGF07815.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1]
          Length = 762

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 109/729 (14%), Positives = 222/729 (30%), Gaps = 139/729 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53
           G    ++  L ++  + +    V+  N             + ++A+ L            
Sbjct: 28  GAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKTEAQDCLIATF 87

Query: 54  -----QQASQTQCIEERFSLLSSFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEF 107
                +   +           +     ++ T  K I+    ++ K  + +  L    +  
Sbjct: 88  HSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRILKNLNLDPKKWNERAILGTISNAK 147

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             + D      +         +       Y++  +++  +DF+DLI+ T  L  +     
Sbjct: 148 NDLIDEVAYANLADDMYT--EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD-- 203

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   +I +DE QDT+  Q+++++ L   F          + +  VGD  QSIY
Sbjct: 204 -VLTYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNICVVGDADQSIY 252

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L  ++           +  ++ L  ++RST  IL   ++V     N +  
Sbjct: 253 GWRGADMQNILDFEKDYP--------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPK 304

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW           + ++  +    D   +       A 
Sbjct: 305 N---------------------LW-------TQNEDGEEIVYYRANDEQDE-------AL 329

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TI  +                 KD  VL R    +  +            I     
Sbjct: 330 FVARTIDQLSREG----------YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMV 375

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                     I+D+++    I +  D++S+  ++  P        + KI      +  ++
Sbjct: 376 GGTKFYSRKEIRDVISYLNLIANPSDNISYERVVNEPKRGVGPGTVEKIRDFAASQEISL 435

Query: 467 YEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +                        + +L       +  D    +L          ++ 
Sbjct: 436 LDASANILLSPVKGKAAQAVYDFANMLLDLRECLDDYTVTDLVEAVLEKTGYAAALAAQA 495

Query: 522 GNE---VIDVLDEFLNFTLRNEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEV 572
             E    I+ ++EFL+ T   +++       S L +L   L +              +EV
Sbjct: 496 TLESKARIENIEEFLSVTKNFDESPDNPTDESGLDKLSRFLNDLALIADTDDGDTESSEV 555

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFLV     VF      +                           
Sbjct: 556 TLMTLHAAKGLEFPVVFLVGMEENVFPLSRASEDEDELEEERRL---------------- 599

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                              YVG+TRA   L +   ++     K+N       + +   + 
Sbjct: 600 ------------------AYVGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDL 641

Query: 693 ERVKKIKLT 701
              + +   
Sbjct: 642 LDYQGLARP 650


>gi|262038007|ref|ZP_06011419.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264]
 gi|261747960|gb|EEY35387.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264]
          Length = 733

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 119/693 (17%), Positives = 224/693 (32%), Gaps = 137/693 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  + Y+    +    +S +N             + ++A+ L  A     +   
Sbjct: 27  GAGSGKTRTVTYRIAHMIKEIGISPMNILALTFTNKAAREMKERAEALIGADSYNLVVST 86

Query: 66  FSLLSSFFLTQKFTP--------------QKNIITQEINKKSPDLKEKLK--KSQDEFIK 109
           F   S   L                    QK+IIT+ I K      + L   K   +  K
Sbjct: 87  FHSFSVKLLKTYADRIGFGRNFNIYDVDDQKSIITK-IKKDLNTGNDDLTPGKIAGKISK 145

Query: 110 IRDRFNTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
           ++++       +  +        L   +   Y E  K N  +DF DL++N   LL     
Sbjct: 146 LKEQGIGINELEEEIDLKLPWNKLFYDIYKQYNEVLKANNAMDFSDLLLNARKLLDDP-- 203

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             ++  ++     +I++DE QDT+ IQ+++I  +   +          + +  VGDE QS
Sbjct: 204 --YVLERVQDRYRYIVVDEYQDTNDIQYQIISIIAAKY----------KNICVVGDEDQS 251

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY+F GA    +L  +R              +++L  ++RST  IL V ++V    E+++
Sbjct: 252 IYAFRGANINNILNFERDYPDAL--------VVKLERNYRSTKRILDVANEVIKNNESSK 303

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
           G                       LW         +    +  +                
Sbjct: 304 GKK---------------------LWTDGDEGEKIKIFNAENVYD--------------E 328

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  I   I                    KD+ +L R    + ++            I   
Sbjct: 329 ADYIVENIRAKHLQGKA----------YKDMTILYRTNAQSRVLEEKLLA----SNIPYK 374

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464
                       IKD++A    + ++ D+ +F+ ++  P  +  +  + KI    + +  
Sbjct: 375 IYGGMQFFQRKEIKDILAYLSLLNNKNDNHNFLRIINVPKRSIGDKTLEKINNLAQKKGL 434

Query: 465 TVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
           ++++       I +          +    +  +       S  + F  ++   K      
Sbjct: 435 SMFDSLKFINEISELRAGVRETLANFYNMMQGIYESLDELSVKEVFDEVMSKTKYIDCI- 493

Query: 519 SRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                + +  ++E LN     + QN   SL E +  +     T         N V++MTV
Sbjct: 494 EDNKEDRVKNIEELLNSITEAQKQNEGLSLSEYLDMVSLSTSTDGMEDEE--NFVKLMTV 551

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H++KGLE   VF+      +F   + +                                 
Sbjct: 552 HSSKGLEFDYVFIAGMEDGLFPSCNFETPEEDIEEE------------------------ 587

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                      RL YV +TRA  +L I   S  
Sbjct: 588 ----------RRLCYVAVTRAKKELFISHVSER 610


>gi|269796104|ref|YP_003315559.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542]
 gi|269098289|gb|ACZ22725.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542]
          Length = 857

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 127/808 (15%), Positives = 247/808 (30%), Gaps = 157/808 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  +      +     ++      L+Q+       +  
Sbjct: 87  AAAEMRERVAAIVGPAAGRMWVSTFHSACVRILRREAKSL-----GLRQSFSIYDSADSQ 141

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P+K    +++  K   LK++L    + +    +   +     S    
Sbjct: 142 RLITMVLRELDLDPKK-FPAKQLQNKISSLKDELVT-PERYAA--ESGASSPQGSSANEV 197

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +   + + Y+   ++   LDF+DLI++T  LL++      +     +   H+L+DE Q
Sbjct: 198 DQVLSDVYSRYQARLRQAHALDFDDLIMSTVTLLQEHP---PVAEHYRRRFRHVLVDEYQ 254

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHS----------------------------SPRTLFA 218
           DT+  Q+ ++R L        + H                              P  L  
Sbjct: 255 DTNHAQYILVRELAGSPARSASAHDESSPHDESSPHDGDAAPAPTEPAAAPTLPPGELTV 314

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  QSIY+F GA  + +L  +                I L  ++RST +ILT  + V 
Sbjct: 315 VGDADQSIYAFRGATIRNILEFEADYP--------DARTILLEQNYRSTQNILTAANAVI 366

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           S   + +                        LW       D+    +   + +  +    
Sbjct: 367 SRNTDRKPKR---------------------LW------TDAGEGAKIIGYVADNEHEE- 398

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  AR IA  I  +         G    ++  D+ +  R    +  +  +      
Sbjct: 399 -------ARFIAQEIDRL---------GDAEKVRPGDVAIFYRTNAQSRALEEVL----I 438

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              +           +   IKD++A  R + + +DD++   +L  P     E     I  
Sbjct: 439 RVGLPYKVVGGTRFYERREIKDVIAYLRAVANPDDDVNLRRILNVPKRGLGERAESMIVA 498

Query: 459 QRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGA 510
           Q     + +       + I        +  +     +  L  +A+  + P +    +L  
Sbjct: 499 QAERDRSSFGEALDRLDEIPGLTARSRTPLKAFRDLMDGLRELAEGGAGPAEVIGEVLDR 558

Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHS 566
               +   +    +    ++ L E        E++     L + +  +     + +   +
Sbjct: 559 TGYLKDLRASDDPQDESRVENLAELHAVAAEFEESEPEGTLADFLERVSLVADSDQIPSA 618

Query: 567 A----------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      +   V +MT+HTAKGLE PVVFL       F H                
Sbjct: 619 DDSGHEGTPVVDPGVVTLMTLHTAKGLEFPVVFLTGMEDGTFPHMRSLH----------- 667

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   +    E  RL YVG+TRA ++L I + +  S    +
Sbjct: 668 -----------------------DEVELAEERRLAYVGITRARERLYISRSAVRSAWGMA 704

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
           N+      + +        ++ + + S  +               +   R  +       
Sbjct: 705 NEFPASRFLDEVPEELWDWRRRESSMSALRGPGGYSGGYGSGGYGSGQRRRSSDDDDFAP 764

Query: 737 QKIPKKLFSP----IKNDINEPYILNPS 760
                   S     I     +P    PS
Sbjct: 765 PIGGSGYRSSKTTTIPAWKKQPEDAAPS 792


>gi|315166930|gb|EFU10947.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1341]
          Length = 791

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 70  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTICLFNEQPDT-- 247

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 420

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 421 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 480

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 481 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 540

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 541 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 598

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 599 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 633


>gi|319761999|ref|YP_004125936.1| uvrd/rep helicase [Alicycliphilus denitrificans BC]
 gi|317116560|gb|ADU99048.1| UvrD/REP helicase [Alicycliphilus denitrificans BC]
          Length = 796

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 102/690 (14%), Positives = 209/690 (30%), Gaps = 143/690 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K+        ++     +  ++  +       L   YEE  ++  V+DF +L++ + +LL
Sbjct: 148 KQLAYFIAGCKEEGLRPRDVEAHDSDTRKKVELYQLYEEQCQREGVVDFGELMLRSFELL 207

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  D    +R    +   HIL+DE QDT+ +Q+  ++ L  D         +  ++ AVG
Sbjct: 208 RDND---PVRVHYQRRFRHILVDEFQDTNRLQYAWLKQLAGDVV--DGRLVTQGSVIAVG 262

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +    R    R          I+L  ++RS ++IL   + + + 
Sbjct: 263 DDDQSIYAFRGARVGNMQDFVREFDVR--------HQIKLEQNYRSYSNILDSANALIAH 314

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +                            +           + +  D      
Sbjct: 315 NSRRLGKNL---------------------------RTTQGPGEPVRVYEAPTDLAE--- 344

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A+ I   I  ++             +   +I VL R    + +I         + 
Sbjct: 345 -----AQWIVDEIRQLVREG---------PMPRSEIAVLYRSNAQSRVIESAL----FNA 386

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            +           +   IK  +A  R + +  DD SF+ ++  P        + ++    
Sbjct: 387 SVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFMRVVNFPPRGIGARTLEQLQDAA 446

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R    ++++ +              +  +  +    Q  +       +L +    + + +
Sbjct: 447 RGSGCSLHDAVSSVPGKAGVNLGAFVAMVDVMREQTQGRNLRAIIGQVLESSGLLEHYRN 506

Query: 520 RF-GNEVIDVLDEFLNFTLRN--------------------------------------- 539
              G + ++ LDE ++                                            
Sbjct: 507 EKEGADRLENLDELISAAESFVTQEGFGRDAVALPLDETGAALTQSPASQGLDPNRPLLQ 566

Query: 540 ----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               + ++  +L  L + L             A  + V++MTVH +KGLE   VF+    
Sbjct: 567 QPLVDTDTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDCVFIGGME 626

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F H++                                      +   EE  RL+YV 
Sbjct: 627 EGLFPHEN----------------------------------AMSDQGGLEEERRLMYVA 652

Query: 655 MTRASDQLIICKHSNT--SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           +TRA  +L +          + + N R+ +              + +   S   D   A 
Sbjct: 653 ITRARKRLYLSHAQTRLLHGQTRYNVRSRFFDELPEEALKWLTPRQQGFGSYAPDSRAAS 712

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            +                   +  +K    
Sbjct: 713 AYGAGARAGFGFNAAAFASPPVPPRKEEPA 742


>gi|289432882|ref|YP_003462755.1| UvrD/REP helicase [Dehalococcoides sp. GT]
 gi|288946602|gb|ADC74299.1| UvrD/REP helicase [Dehalococcoides sp. GT]
          Length = 738

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 101/551 (18%), Positives = 182/551 (33%), Gaps = 118/551 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   YE+  K+N  LDF+DL++    L K+      +     +   H+++DE QD
Sbjct: 167 EMVGRVYELYEKRLKQNKALDFDDLLLKVVQLFKQHPE---VLAGYQERYLHVMVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+L+Q+E+++ L+  +          R +  VGD  QSIYS+  A+ + V   +      
Sbjct: 224 TNLVQYELVKMLSAKY----------RNICVVGDPDQSIYSWRSADLRNVFNFETD---- 269

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST +IL     V +     + +S                   
Sbjct: 270 ----NPGAKVILLEQNYRSTKNILEAASCVIAPNSGRKPIS------------------- 306

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + Q  +    F+   +       A+ +   I  +           
Sbjct: 307 --LW-------TENESGQPIAVVETFNEQEE-------AQFVVSEIEKLTR--------- 341

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI +L R    +  +          Y +               +KD++A  R 
Sbjct: 342 YEKFSPGDIAILYRTNAQSRALEEAF----IRYGMPYRLVSGTRFYQRREVKDIVAYLRL 397

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480
           + + +D +S   ++  P        +  +    R +  ++Y+ +   ++    K      
Sbjct: 398 LQNPQDSVSLQRVINIPTRGIGAKTLSDLAQFAREQDISLYQSLINLSDENAPKPPIPSR 457

Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
                      +  LI  AQ     +    +L     R     S  G E  D + E    
Sbjct: 458 GLKPLTDFGALLKSLIIDAQTLPLLNLLDRLLEGISYRGFLFASEDGEERWDNILELRTV 517

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             + ++      + L + LE               + V ++T+H AKGLE PVVF+V   
Sbjct: 518 AQQYQEILPP--EGLSAFLESVALVSDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGME 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H                                         +  +E  RL YVG
Sbjct: 576 EGVLPHNRSFDDP----------------------------------AQMQEERRLCYVG 601

Query: 655 MTRASDQLIIC 665
           +TRA  +L + 
Sbjct: 602 VTRAKKRLYLV 612


>gi|323494180|ref|ZP_08099295.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546]
 gi|323311574|gb|EGA64723.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546]
          Length = 723

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 102/549 (18%), Positives = 182/549 (33%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+       IR        HIL+DE QDT+ I
Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRD---KKHIREHYQARFKHILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +  R         
Sbjct: 229 QYAWLRMMAG----------PDSHVMIVGDDDQSIYGWRGAKIENIEKFTREFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I                  
Sbjct: 310 -------TEGVEGEPISVYSAYNELDE-------ARFAVNKIKEWQEKGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R + ++
Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMTNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T++E           A          
Sbjct: 402 NDDSAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWEASVALLDEKVLAGRAAGALSRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ I  L       S H+    ++        +    G +    I+ L+E +  T + E+
Sbjct: 462 VELILALEDDTCEMSLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 522 PEEAEDMTLLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 582 SQMSV----------------------------------EEAGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHS 668
           ++L I    
Sbjct: 608 EKLYITYAE 616


>gi|24379604|ref|NP_721559.1| ATP-dependent DNA helicase [Streptococcus mutans UA159]
 gi|24377553|gb|AAN58865.1|AE014954_4 ATP-dependent DNA helicase [Streptococcus mutans UA159]
          Length = 733

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 106/665 (15%), Positives = 206/665 (30%), Gaps = 121/665 (18%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +  L    +    + D          +     L       Y+   +++  +DF+DLI+ T
Sbjct: 112 RAVLAAISNAKNDLLDEIAYENRAGDSYT--QLVAKCYKAYQSELRQSEAMDFDDLIMLT 169

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L  +      +     Q   +I +DE QDT+  Q+++++ L   F          + +
Sbjct: 170 LRLFDQNPD---VLAYYQQRYQYIHVDEYQDTNHAQYQLVKLLASRF----------KNI 216

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD  QSIY + GA+ + +L  ++   +          ++ L  ++RS+  IL   + 
Sbjct: 217 CVVGDADQSIYGWRGADMQNILDFEKDYPE--------AKVVLLEENYRSSKKILQAAND 268

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V     N +                        LW           + +Q  +    D  
Sbjct: 269 VIKNNRNRRDKK---------------------LW-------TQNDDGEQIVYYRADDEQ 300

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +       A  +A TI+N++                KD  VL R    +  I       
Sbjct: 301 DE-------AVFVASTIANIVRE---------MGKNFKDFAVLYRTNAQSRTIEEAL--- 341

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                I               I+D++A    I +  D++SF  ++  P        + KI
Sbjct: 342 -LKSNIPYTMVGGTKFYSRKEIRDIIAYLNVIANTADNISFERIVNEPKRGVGPGTLEKI 400

Query: 457 -CTQRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                 +  ++ E  +           +     +   I +L       S  +    +L +
Sbjct: 401 RNFANLQGMSLLEASENIMLSSIKGKAVQAVYELANMIIDLRSKLDHYSITEVVEAVLDS 460

Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS------SLQELISEL-EQYPPT 560
               +    +   E    I+ ++EFL+ T   +  +         L+ L   L +     
Sbjct: 461 SGYLEVLEIQKTLESQTRIENIEEFLSVTKNFDDTTDDVPENETGLERLSRFLNDLALIA 520

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                 +   EV +MT+H AKGLE P+VFL+     VF      +               
Sbjct: 521 DTDEAESESAEVTLMTLHAAKGLEFPIVFLIGLEEGVFPLSRSMEEESELEEERRL---- 576

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                          YVG+TRA   L I   ++ +   +++   
Sbjct: 577 ------------------------------AYVGITRAEQMLFITNANSRTLYGRTSYNR 606

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
               + +   +    + +      +          T   +   L +    +++  + K  
Sbjct: 607 ESRFIQEISEDLLVHQGLARPARASFKVSYQDSNETKFGQGMSLAQALQARKVASQPKKS 666

Query: 741 KKLFS 745
               S
Sbjct: 667 PFSNS 671


>gi|182436526|ref|YP_001824245.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326777148|ref|ZP_08236413.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465042|dbj|BAG19562.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657481|gb|EGE42327.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus
           XylebKG-1]
          Length = 813

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 117/709 (16%), Positives = 221/709 (31%), Gaps = 134/709 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 126 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 180

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +    K  +LK +L        +          F+ T   
Sbjct: 181 RLMALVCRDLDLDP-KQFPPKSFTAKVSNLKNEL------IDEETFAGQAADGFEKT--- 230

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+D+I+ T  LL+       +     +   H+L+DE Q
Sbjct: 231 ---LAQAYALYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 284

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L          + +P  L  VGD  QSIY+F GA  + +L+ +     
Sbjct: 285 DTNHAQYTLVRELVG----PAGENDAPAELCVVGDADQSIYAFRGATIRNILQFEEDYP- 339

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    + I L  ++RST  IL+  + V    E+ +  +                  
Sbjct: 340 -------SATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------------ 374

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW        +  +  + +         +       A+ +A  I  +          
Sbjct: 375 ---LW-------TNAGSGARITGYVADTEHDE-------AQFVADEIDRLTDAG------ 411

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +A D+ V  R    + +   +         +           +   ++D++A  R
Sbjct: 412 ---DAKAGDVAVFYRTNAQSRVFEEIL----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 464

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--- 482
            + + ED +    +L  P     +     I      E  +  + +++         +   
Sbjct: 465 VLANPEDTVPLRRILNVPKRGIGDRAEAMIDALSMREKISFPQALRRVDEAYGMAARSSN 524

Query: 483 ---HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                   + EL  I +  + P      +L       +  +    +    I+ L E    
Sbjct: 525 AVKRFNTLMEELRTIVESGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 584

Query: 536 TLRNEQNSYS-----SLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            L  EQ         +L E + +  L      I          + +MT+HTAKGLE PVV
Sbjct: 585 ALEFEQERGDEEGAGTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVV 644

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FL      VF H                                       +    EE  
Sbjct: 645 FLTGMEDGVFPHMRALG----------------------------------QTKELEEER 670

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           RL YVG+TRA ++L + + +  S   + +       + +        ++
Sbjct: 671 RLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPEAHLDWRR 719


>gi|306835515|ref|ZP_07468529.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
            49726]
 gi|304568572|gb|EFM44123.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
            49726]
          Length = 1059

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 134/1019 (13%), Positives = 269/1019 (26%), Gaps = 158/1019 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +          L       +    S  + T           ++        E+    ++ 
Sbjct: 114  TVATYDSYAGELVREYGLLVPVEPSARIITEAERFAIAYDVVKNYGGKLSDEKTLGSITE 173

Query: 72   FFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              L        ++   + I + + D +  +   +       +     + + +        
Sbjct: 174  VLLKITSDMDNSLKDPDDIAEFARDFRADIDNLEKAPRTKGEYSKDLQKYINVQDLRVQY 233

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              L    +  + +  V+ F + +     L ++      +  +  Q    +++DE QDTS 
Sbjct: 234  VPLIEELKRTQAEQQVITFGEQMSVAARLAQEHPA---VGKQQAQRYRVVMLDEYQDTSY 290

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q  ++RSL               ++ AVGD  Q+IY + GA  + +        +    
Sbjct: 291  AQRVLLRSLF-------GGEHKDISVTAVGDPMQAIYGWRGATSENLTAFVEDFPQ---A 340

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             G      +L  S+R+ +  L + + V +          D      H+       G ++L
Sbjct: 341  DGTPAPKDQLTTSWRNPSGALELANSVAAGVFGGGPRPVDELHAAPHK-----GEGEIEL 395

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                    +                             IA  +                 
Sbjct: 396  GYFASEDEE--------------------------HEFIAQKLRQQWDAREGDGFRA--- 426

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                   VLVR  + T  I        +   +    N    L     I+DL+AL   ++ 
Sbjct: 427  ------AVLVRTNRQTAAIAAA----LDAVDVPNEINGLGGLLWQPEIQDLVALATMLVR 476

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS----------- 479
             ED  + + +   P+      DI  +  ++       +   ++                 
Sbjct: 477  PEDAQAALRIFAGPICGLGMGDIQALAARQKNLAGAKQERLQWEEGMDPEEYLRAQLAQL 536

Query: 480  ------------------------------KFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                                          + + V   +  L   +      D F  I  
Sbjct: 537  TAEGPDQTVGLADALADLGERDRYTPQGLARMEEVSAKLRYLRTYSLSKPLSDLFADIEA 596

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
                R + ++R        LD+F +           SL  L+  LE              
Sbjct: 597  IFNIRTEVLARGSAGGATHLDKFADIVAGF---HGDSLYALLDYLELAREHEDGLGLGEV 653

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ- 624
             A+ + V+IMTVH AKGLE   V++V   S  +  +    +  +  +  D       P  
Sbjct: 654  PASTDRVQIMTVHKAKGLEWEHVYVVHADSSSYKAQAETFLSKIEKVPGDNDYIEVSPDA 713

Query: 625  --SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                         +   +    EE  RL YV +TR    L +      +   K+ +  + 
Sbjct: 714  VTRSEFEKACKAFLDDDRAHNAEEAARLFYVALTRTESTLTVTGSGTNNRTGKAKKGPYE 773

Query: 683  DM----------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +          V +    +E V+             +  +  +    +  L   E + +
Sbjct: 774  YLERLKETFPQYVGEWTVPEEPVETSAHAAESGLFPALEADPDSLAGADAVLAAMEDLPE 833

Query: 733  LMDEQKIPKK------------LFSPIKNDINEPYILNPST--------IDTKGKTNLES 772
            L   +                        D+  P  L  S         +    +     
Sbjct: 834  LSHGETFELWEQDVGALIEEYKSLQQPVVDVELPSELTASDMVALGSDPLQFARRQRRPV 893

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                N    RG   H  L+        +R         +        E  +L       L
Sbjct: 894  PFKPNSYAKRGTAFHAWLE--------ERFGSPALLGEEELPGIDEPEDFDLEELKESFL 945

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQ 891
             +                V           ++ GR+D +   +     + ++KT      
Sbjct: 946  NSEWAQ-------RQPDFVEAPFEITIGSAVVRGRMDAVFRLADDTWMVVDWKTGRPPKG 998

Query: 892  EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                       QL++Y +  +  +    +     YV +   F        +    +   
Sbjct: 999  TAMEAA---KIQLAVYAEAWRRIHGGDKIRAAFHYVHDGYTFEPDTLAQGEELRSLLES 1054


>gi|261250055|ref|ZP_05942632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891]
 gi|260939559|gb|EEX95544.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891]
          Length = 723

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 187/549 (34%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L + Y+EA  +  ++DF ++++  ++LL+       IR        HIL+DE QDT+ I
Sbjct: 172 QLYSAYQEACDRAGLVDFAEILLRAHELLRD---KKHIREHYQARFKHILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +  +         
Sbjct: 229 QYAWLRMMAG----------PDSHVMIVGDDDQSIYGWRGAKIENIEKFTQEFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I        +         
Sbjct: 310 -------TDGAEGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGVL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R + ++
Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMSNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R +  T+++        Q  A          
Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRFAARDQGSTMWQASLHLLENQVLAGRAAGALSRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ ++ L       S H+    ++        +    G +    I+ L+E +  T + E+
Sbjct: 462 IELVNALEDDTCELSLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 522 PEEAEDMTLLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHS 668
           ++L I    
Sbjct: 608 EKLYITYAE 616


>gi|300718152|ref|YP_003742955.1| Exodeoxyribonuclease V beta chain [Erwinia billingiae Eb661]
 gi|299063988|emb|CAX61108.1| Exodeoxyribonuclease V beta chain [Erwinia billingiae Eb661]
          Length = 1181

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 144/962 (14%), Positives = 315/962 (32%), Gaps = 140/962 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             K  W         I           +  +    + L Q +  +  +  F      F  +
Sbjct: 232  LKAAWLAAGNLHDVIANSGVDKRSYSSKHLPNWLEKLNQWATEETQDYSFPKDLERFSQR 291

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
                +    T++       L +++ +   E + +R+      + +   A+          
Sbjct: 292  VLLEK----TKKGEAPQHPLFDEIDRFLAEPLSLRELVIARALSEIRFAT---------- 337

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
             ++ K+ N +L F+DL+   +  L++      +   I       LIDE QDT   Q+ + 
Sbjct: 338  -QKEKQLNALLGFDDLLGRLDSALQQP-AGGALAEAIRGRYPVALIDEFQDTDPQQYRIF 395

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            R+L                L  +GD KQ+IY+F GA+    ++ +       T       
Sbjct: 396  RTLYGK--------QPENALLLIGDPKQAIYAFRGADIFTYMKARNEVSAHYT------- 440

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L  ++RS+  ++  V+++FS  ++    S+     I   + +            +  
Sbjct: 441  ---LETNWRSSPGMVNSVNRLFSQQQHPFLFSD-----IPFIAVQPAGPNA-----ALSF 487

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKKRVI 371
              D    P    W    D +        +AR+ A  I + +         I    K R +
Sbjct: 488  TLDGTEQPALRFWLQPGDGVGVSDYQQFMARQCAAEICHWLTAGQQGTALIGKGEKHRPV 547

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILS 430
            QA DI +LVR R +      + R   N   I  V  ++R  +      ++++ L + +L+
Sbjct: 548  QASDITILVRSRGEAS----VMREALNGLNIPSVYLSNRDSVFTTPEAREMLWLLQAVLA 603

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             E +      L + +F      +  +       + + +    +    +   + V+  + E
Sbjct: 604  PEQERVLRSALATSIFGLDAVTLDALNQNERAWDALVDEFDGYRQRWLK--RGVLPMLRE 661

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSL 547
            L+              +L ++ G ++            L E L      L +E      L
Sbjct: 662  LMINRN------IAEDLLASESGERRLTDLL------HLGELLQEASAQLDSEHALVRWL 709

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             + +++      + +    ++ + V+I+T+H +KGL+ P+V+L    +            
Sbjct: 710  AQEVAQPNGQSSSQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVAN------------ 757

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                            Q+        + ++  ++    E  RLLYV +TR+     +   
Sbjct: 758  -YREAGQGIYHDRESYQALLDLRDDEESVELAEQERLAEDLRLLYVALTRSVWHCSVGIA 816

Query: 668  --SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW-STHHPENTPL 724
                 + +K+ N       +     + E     +L + +   E  + E  +   P+ TP 
Sbjct: 817  PLVKGNRKKEGNSDLHRSALGYLVQHGEAADASQLLSHLQSLENDSIEVIAAAAPDATPW 876

Query: 725  EREETIKQLMDEQKIPKKLF---------------SPIKNDINEPYILNPSTIDTKGKTN 769
            +  +  +Q++  Q+I + L                  +  D+     ++ +        +
Sbjct: 877  QPVQDEEQVLSSQQIGRTLRDEWRVTSYSGLQQHGQSVTFDLLPKLDVDAAGEGQNPLMS 936

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
              +  S  +    G  +H L + +      + +        +   L      K  L  I 
Sbjct: 937  QLTPHSFPRGAAPGTFLHGLFENLDFTQPVEDEWLSEQLLAQGHDLAWLPVMKAWLERIL 996

Query: 830  RL-LENPM--MTTAMSCDSYSE----VSVSGKINCPKKDIIIS----------------- 865
            +  L++    ++   +     E    + +   +     D +I                  
Sbjct: 997  QTPLDDSGVSLSQLPADKRQVELQFYLPIQQMLTASGLDKLIRHHDPLSAECPPLNFQQV 1056

Query: 866  -----GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKIL 911
                 G ID +   Q   ++ +YK++       ++ P           +  Q  +Y   L
Sbjct: 1057 QGMLKGFIDLVFCWQGKYYLLDYKSNWLGASAEDYTPEAMALAMQSHRYDLQYQLYSLAL 1116

Query: 912  KD 913
              
Sbjct: 1117 HR 1118


>gi|327489339|gb|EGF21132.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1058]
          Length = 762

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 96/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +  +    +L          ++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            +++       S L +L   L +              +EV +MT+H AKGLE PVVFLV 
Sbjct: 516 FDESPDNPTDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF      +                                              Y
Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           VG+TRA   L +   ++     K+N       + +   +    + +    
Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLDYQGLARPA 651


>gi|291295604|ref|YP_003507002.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
 gi|290470563|gb|ADD27982.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
          Length = 706

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 125/744 (16%), Positives = 234/744 (31%), Gaps = 135/744 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  ++++  + L   +V                 + ++ + +            
Sbjct: 28  GAGSGKTRTVVHRIAYLLRERRVYPAEILAVTFTNKAAGEMKERLEKMVGRPARDLWVST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F   +   L         +   +  + + ++  LKE LK+ + E      R    ++   
Sbjct: 88  FHAAAVRILRTYGEYVGLRPGFVIYDEDDQNTLLKEVLKELELEAKPGPFRAMIDRIKNR 147

Query: 123 TLASLT---------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                                 A  +   Y+   +    LDF DL++ T +L ++     
Sbjct: 148 GAGLAEYMREAPDFIGGVPKDAAAEVYRKYQSGLRMQGALDFNDLLLLTIELFEQHPE-- 205

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            + +K+ Q    I +DE QDT+ +Q+++ R L  +             L  VGD  QSIY
Sbjct: 206 -VLHKVQQRARFIHVDEYQDTNPVQYKLTRLLAGE----------RPNLMVVGDPDQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F  A+   +L   +              +I L  ++RS++ IL V + V          
Sbjct: 255 GFRSADINNILDFTKDYP--------GARVIRLEENYRSSSSILRVANAVIEKNALRLEK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
               T               V+L+    ++ +                          A 
Sbjct: 307 VLRPTRP---------GGEPVRLYRAPNAREE--------------------------AA 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I  +                 + I VL R    + L+    R       + V   
Sbjct: 332 FVAREIVKL--------------GNFQQIAVLYRTNAQSRLLEEHLR----RANVPVRLV 373

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                 +   IKDL+A GR  ++  D ++   ++ +P        + ++    +    TV
Sbjct: 374 GAVGFFERREIKDLLAYGRVAVNPADSINLRRIVNTPPRGIGATTVSRLVEHAQKTGTTV 433

Query: 467 YEYIQ--KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGN 523
           +E  +  +       + Q  ++ + ELI  A    P  FF  +L     R+       G 
Sbjct: 434 FEAFRVAEQVISRPQQVQAFVRLLDELIEAAFESGPTAFFQRVLEQTGFREALKQEPDGE 493

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           + +  ++E L      E+    SL + +  +       +    A    V +MT+H AKGL
Sbjct: 494 DRLQNVEELLRAAQDWEEEEGGSLSDFLDSVALTAKAEEPQGDAPAEAVTLMTLHNAKGL 553

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P VFLV     +  H++                                     +   
Sbjct: 554 EFPTVFLVGLEENLLPHRNSLH----------------------------------RLED 579

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            EE  RL YVG+TRA ++L +          K         + D   +      +K   +
Sbjct: 580 LEEERRLFYVGITRAQERLYLSYAEERETYGKREYTRPSRFLEDIPQDL-----LKEVGA 634

Query: 704 INKDEWIAYEWSTHHPENTPLERE 727
               E      +   P+      E
Sbjct: 635 FGDSEVRVLPQARPEPKPRTQLAE 658


>gi|296393904|ref|YP_003658788.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296181051|gb|ADG97957.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 789

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 115/806 (14%), Positives = 226/806 (28%), Gaps = 161/806 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  +  +  W L                      + ++   L      +     
Sbjct: 31  GAGSGKTSVITRRVAWLLAEGHARPGEILAITFTNKAAGELKERVGALVGGRMWEMWVST 90

Query: 66  FSLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQD--------EFIKIRDRF 114
           F    +  L  +  PQ       T      S  L   + +  +          +  +   
Sbjct: 91  FHSSCARLLRAEAGPQAGFDQNFTIYDADDSKRLLAMVAEELELDTNRFPPRMLAAKISD 150

Query: 115 NTYKMFKSTLASLTL-------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
              ++     A + +          +   Y+E       +DF+DLI+   +LL+    +A
Sbjct: 151 LKNELIAPEAALVGVEDPFDLVLGQVYRRYQERLALANAMDFDDLIMRAVELLQTNPEAA 210

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
               +      H+L+DE QDT+  Q+ +IR L      G    +    L  VGD  QSIY
Sbjct: 211 Q---RWRGRFRHVLVDEYQDTNHAQYVLIRELVG-AGAGTQVGAETSALTVVGDSDQSIY 266

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA  + +   +R               + L  ++RST +IL+  + V +  +  +  
Sbjct: 267 RFRGATIRNIEEFERDFPN--------ARTVLLEQNYRSTQNILSAANAVIAHNQGRREK 318

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW        +    Q   + +              A 
Sbjct: 319 R---------------------LW------TQAGDGQQIIGYVA--------DHEHDEAS 343

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I+ ++ +            +  D+ V  R    + +           + +     
Sbjct: 344 FVATEITELVRSG----------AKHGDVAVFYRTNNASRVFEEAF----IRHAVPYRVV 389

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETV 466
                 D   ++D++A  R I +  D +S   ++ +P     +    +I        +T 
Sbjct: 390 GGQRFYDRREVRDIIAYLRVIANPSDAVSLSRIINTPRRGLGDRAQAQIAAWAGSRGQTF 449

Query: 467 YE--------YIQKFANCGISKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQ 516
           ++         +   A          +  I  L     A   +  +     +     R  
Sbjct: 450 WDACQAAAGGAVAALAARSQRAVADFVAMIAGLRAELAAGDITVGELVARTVERSGYRAV 509

Query: 517 FISRFGNE---VIDVLDEFLNFTLRN-------------------------EQNSYSSLQ 548
                  +    ++ LDE ++  +                           E +      
Sbjct: 510 LADSTDPQDGARLENLDELISVAVEYGELVAAREGGPVADGFAGELRVNLPEADENEGHA 569

Query: 549 ELISELEQ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +L   LEQ              +    V +MT+HTAKGLE PVVF+       F H    
Sbjct: 570 KLRDFLEQVSLVADSDRLPEGGSQSGVVTLMTLHTAKGLEFPVVFVTGLEEGQFPHLRSL 629

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
              +                                     E  RL YVG+TRA +QL +
Sbjct: 630 GDPV----------------------------------ELAEERRLAYVGITRAREQLYV 655

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
            +    +             + +   +    ++           W  +  S     + P 
Sbjct: 656 SRSITRTLRGSPMTNPPSRFLLEIPPHLVSWRR-----GGPDQAWAGFTRSDFGSVSAPR 710

Query: 725 EREETIKQLMDEQKIPKKLFSPIKND 750
                +       +   +    ++++
Sbjct: 711 AAGNAVSARKPAAERGARPRPNLRHE 736


>gi|77164502|ref|YP_343027.1| UvrD/REP helicase [Nitrosococcus oceani ATCC 19707]
 gi|254433459|ref|ZP_05046967.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76882816|gb|ABA57497.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosococcus oceani
            ATCC 19707]
 gi|207089792|gb|EDZ67063.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 1146

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 155/976 (15%), Positives = 311/976 (31%), Gaps = 135/976 (13%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT-QCIEERFSLLSS 71
             E +  ++  L  F         S    T   + ++  + L             +  L+ 
Sbjct: 236  PESMLAEILELARF-------AASNVAATAPASPIQACRDLWNWPGIQAEALPHWLGLAQ 288

Query: 72   FFLTQKFTPQKNI-----ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS---- 122
              LT +   ++              +  + ++ LK+ +   +    R    +  +     
Sbjct: 289  LLLTDEGEWRQQANKNIGFPAPSAARGQEERQFLKEQKRALLDCLARLEGEEALRRALHG 348

Query: 123  ---------TLASLTLAKYLN-------AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                     T A   L + L        A  +   ++   +DF ++       L + +  
Sbjct: 349  LRFLPSASYTAAQWQLMEALFQLLPLAVAQLQLVFQEQGEVDFTEVAQRAVVALGEAEAP 408

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   +D +I H+L+DE QDTSL Q+ ++  LT  +  G+      RTL  VGD  QSI
Sbjct: 409  TDLALALDYQIRHLLMDEFQDTSLSQYILLERLTLGWEAGEG-----RTLLVVGDPMQSI 463

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F  AE    L+                + + L ++FRS   I+  V++ F        
Sbjct: 464  YRFREAEVGLYLQA-----WWQGVGLLPLTPLTLSVNFRSQQGIVDWVNQSFRQILPVAQ 518

Query: 287  LSEDSTTT--IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                        H          VQ+         ++                       
Sbjct: 519  EIATGAVPYSQSHAFHPPLMAPAVQIHPFFEKGSLAE----------------------- 555

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A+R+ + +              ++      I +LVR R     I  L R       +  
Sbjct: 556  -AKRVVHLVQQ-----------TRQAAPNSTIAILVRSRGHLAGIVPLLRE----AGVGF 599

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
               +   L     ++DL+AL + +    D LS++ +L++P    +  D++ +     +  
Sbjct: 600  RALEIEPLGSRPIVQDLLALTKALFHLGDRLSWLTVLRAPWCGLTLADLYVL-AGEDKQA 658

Query: 465  TVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
             V++ IQ+ A        G  +   + +   + +   +  SP      +  A  G     
Sbjct: 659  AVWDRIQEDACIQGLSEEGRERLGRLRQVFAKALGERRRTSPRRQVEGVWLALGGPACVT 718

Query: 519  SRFG-NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                  E    LD      +  E   + +L+E +++L                 ++IMT+
Sbjct: 719  DSIALEEASVYLDLLEREAVAGEILDFRALEESVAQLFA------PPDKEADETLQIMTI 772

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQ--SKSRNN 630
            H AKGLE   V +   G       H   +      +     DD  + +       +S+++
Sbjct: 773  HRAKGLEFDTVIVPGLGRPPRHESHQLLLWAERPTVHYPTGDDGALLLAPISGAGRSQDS 832

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
            I   + +  ++  + E  RLLYV +TRA  +L +    +  +  K    + + ++   + 
Sbjct: 833  IYQYIKRLHEEKGEFENGRLLYVAVTRAKHRLHLFGQVDLDDTGKPKVPSKHSLLASLWP 892

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              +   +         +             +  + R  T  Q        K     +   
Sbjct: 893  AVKGKFEATALLQRETENREEGRDPGDSSISGFISRLSTQWQCPAPIAGVKADIEVLPEA 952

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR--------K 802
             +                 +E   +     + G ++H+ LQ+I                 
Sbjct: 953  AS-------------ALDPIEFDWAGETARHIGTVVHRYLQIIAGEGPEHWSLARITALA 999

Query: 803  NFITSYCTKNAKLWPAKE--YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
              +     +   +    E   +     + + LE+P     ++ + Y +      ++    
Sbjct: 1000 PALRQALMQQGVMPNEMENAIERAREVLRQTLEDPRGRWILASN-YRQARNEYSLSGVLN 1058

Query: 861  DIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHI----PYTHIAQLSIYEKILKDSY 915
              II   ID+  I +  + +I +YKT  H     E         +  QL  Y  ++    
Sbjct: 1059 GRIIRAVIDRTFIDEAGVRWIVDYKTGVHEGGGREEFLNREQERYHPQLERYAALMALKV 1118

Query: 916  PN-KSLVCLLIYVSEP 930
            P  + +   L Y    
Sbjct: 1119 PGTEKIRLGLYYPQIG 1134


>gi|258510684|ref|YP_003184118.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477410|gb|ACV57729.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 756

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 122/778 (15%), Positives = 234/778 (30%), Gaps = 143/778 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +   +V                 + ++ + L     +      
Sbjct: 34  GAGSGKTSVLTRRIAYLIAERRVPPWAILAITFTNKAAREMEERIERLVGPVASDIWTST 93

Query: 66  FSLLSSFFLTQK-------------------FTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           F  + +  L +                       ++ +    I+ +  + +  L      
Sbjct: 94  FHAMCARILRRDIHHLGYTSAFTVLDAADQVSLVRRLMQEMNIDVRKFEPRAVLHAISQH 153

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++R       +  S      +   +   YE   ++N  LDF+DL++ T +L +K    
Sbjct: 154 KNELRSAEKALDLAGSPYD--KMVGDVYLAYERRLRENQALDFDDLLVKTVELFRK---V 208

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +        +HI +DE QDT+  Q+ +++ L E            R L  VGD  QSI
Sbjct: 209 PDVLAYYQHRFSHIHVDEYQDTNHAQYVLVKLLAE----------RRRNLCVVGDSDQSI 258

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +R              +I L  ++RST  IL + ++V    +    
Sbjct: 259 YGWRGADIRNILEFQRDYP--------DARVIRLEQNYRSTGRILRIANQVIQHNQMRLE 310

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW        ++     +                + A
Sbjct: 311 KN---------------------LWTDRGEGEKAKLFVAPD--------------ERVEA 335

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I+ M+              + +D+ +L R    + ++            I    
Sbjct: 336 DWVADEIARMVANGR----------EYRDVAILYRTNAQSRVLEEAF----LQRGIPYRI 381

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  +   +KD++A  R I +  DD+SF+ ++  P     +  + K+    RH   +
Sbjct: 382 YGGLRFYERREVKDVIAYLRLIANPNDDVSFLRVVNVPKRGIGDTTLEKLAEYARHRGTS 441

Query: 466 VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++E          +    S  Q  ++ I  L     F    D    +L     R+   + 
Sbjct: 442 LFEAALHALEAGISKKAASALQSFVELIQTLQLQRAFLPLTDLTDELLDRSGYREALRAE 501

Query: 521 FGNEVI---DVLDEFLNFTLRNEQNSYSS--LQELISELEQYPPTIKRAHS-------AN 568
              E     + LDEFL+ T   +++      +  L   L                    +
Sbjct: 502 RSLEAENRLENLDEFLSLTREFDEDGVPDGEMGALEQFLTHVALVSDADLPGGRPGRRED 561

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            +EV +MT+H AKGLE PVVFLV     VF H+                           
Sbjct: 562 LDEVSMMTLHAAKGLEFPVVFLVGLEEGVFPHRRALDGGEELEEERRL------------ 609

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                                  YVG+TRA ++L +    +     +    T    + + 
Sbjct: 610 ----------------------CYVGITRAMERLYLTTCRSRMLFGERRSFTPSRFLSEM 647

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
             +D      +                              +             + P
Sbjct: 648 PASDIERAGEEDAMFGWGWRDARAGVRAPAHAVADAASGPRMSVPRSFGADLSVPYEP 705


>gi|163788705|ref|ZP_02183150.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1]
 gi|159875942|gb|EDP70001.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1]
          Length = 776

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 102/597 (17%), Positives = 188/597 (31%), Gaps = 127/597 (21%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      M +           +   Y +   K   +DF+DL++ TN+LL +      +  
Sbjct: 162 ELMEADAMARRPR-----LGDIYKEYVDRCFKAGAMDFDDLLLRTNELLTRFP---NVLA 213

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +      +IL+DE QDT+  Q+ ++R+L++ F          + +  VGD+ QSIY+F G
Sbjct: 214 QYQNRFRYILVDEYQDTNHSQYLIVRALSDRF----------QNICVVGDDAQSIYAFRG 263

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A    +L  ++              +  L  ++RST +I+   + V    +        +
Sbjct: 264 ANINNILNFQKDYD--------GVKVYRLEQNYRSTKNIVGAANSVIEHNKTKLDKIVWT 315

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
              I            V++   +    +                           R +A 
Sbjct: 316 ANDI---------GEKVKVHRSLTDGDEG--------------------------RYVAS 340

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           TI         +     + +   D  VL R    +  I    R       I         
Sbjct: 341 TI---------WETKMNKQLHNSDFAVLYRTNAQSRAIEDALR----KRDIPYRIYGGLS 387

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYI 470
                 IKD+ A  R IL+  D+ +   ++  P     +  + ++    +    T+Y+ I
Sbjct: 388 FYQRKEIKDVTAYLRLILNSADEEALKRVINYPARGIGQTTVDRLVVAANVTGRTIYDVI 447

Query: 471 QKFA-------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           +          N   +K +  +  I     + Q  +  D    +       ++       
Sbjct: 448 KDIDNVTININNGTKNKLRDFVTLIESYKVMNQNANAFDLAEHVTKTSGLIRELNKDGTP 507

Query: 524 E---VIDVLDEFLNFTLRNEQNS------YSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           E    +D + E LN      +          SL E + ++             + + V +
Sbjct: 508 EGVTRMDNVQELLNGIKDFVEGQIELADAGDSLAEFLEDVALATDLDG--DKGDPDHVAL 565

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE   VF+V     +F                                    
Sbjct: 566 MTIHLAKGLEFGHVFIVGMEEDLFPS---------------------------------- 591

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            +    +S  EE  RL YV +TRA  Q  +    +     K         + +    
Sbjct: 592 AMSMNTRSELEEERRLFYVALTRAEKQAYLTYTLSRYRWGKLIDAEPSRFIEEIDEE 648


>gi|326390898|ref|ZP_08212449.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993046|gb|EGD51487.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW
           200]
          Length = 711

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 102/555 (18%), Positives = 189/555 (34%), Gaps = 112/555 (20%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+D+II T +L K+      +     ++  +I++DE QDT++ Q+  +  L + +
Sbjct: 183 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNMPQYHFVNMLAQKY 239

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     R L  VGD+ QSIY + GA+ K +L  ++   +          +I+L  +
Sbjct: 240 ----------RNLCVVGDDDQSIYGWRGADVKNILNFEKDYPE--------AKVIKLEQN 281

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   + V       +  +                     LW        +   
Sbjct: 282 YRSTKTILEAANYVIDNNIRRKKKT---------------------LW-------TNNEE 313

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++       +   +          +   I N+   +             +D  +L R  
Sbjct: 314 GERIILCELENEREEAE-------FVIQEIINLKERENR---------SFRDFAILYRTN 357

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +              +I           D   IKD++A  R +++  DD+SF  ++  
Sbjct: 358 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 413

Query: 444 PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSP 500
           P        I  +      +  +++  I        +K       ++I ELI      + 
Sbjct: 414 PKRGIGAATIEALEATALEKDTSLFFAIDDAKVSQRAKNSLLEFKEFILELIDKKDTMTV 473

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556
            +    IL      ++       +     + L+EFLN     E+ +   SL+  +S +  
Sbjct: 474 SEVINYILEETGYIEELEKEESEQAEGRIENLNEFLNAAYEFEESSEDKSLEAFLSGITL 533

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                          V +MT+H+AKGLE P+VF+V     +F                  
Sbjct: 534 VSDIDL--AGEIGESVVLMTLHSAKGLEFPIVFMVGMEEGIFPS---------------- 575

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   +   EE  RL YVG+TR+ ++L +      +   KS
Sbjct: 576 ------------------FKSFTDEYELEEERRLCYVGITRSKEKLYLTYARRRNLYGKS 617

Query: 677 NQRTWYDMVYDSFHN 691
              ++   + +    
Sbjct: 618 QYSSYSRFISEIPER 632


>gi|330826182|ref|YP_004389485.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329311554|gb|AEB85969.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 796

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 103/690 (14%), Positives = 209/690 (30%), Gaps = 143/690 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K+        ++     +  +   +       L   YEE  ++  V+DF +L++ + +LL
Sbjct: 148 KQLAYFIAGCKEEGLRPRDVEVHDSDTRKKVELYQLYEEQCQREGVVDFGELMLRSFELL 207

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  D    +R    +   HIL+DE QDT+ +Q+  ++ L  D   G+        + AVG
Sbjct: 208 RDND---PVRVHYQRRFRHILVDEFQDTNRLQYAWLKQLAGDVVDGRLVTQGG--VIAVG 262

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +    R    R          I+L  ++RS ++IL   + + + 
Sbjct: 263 DDDQSIYAFRGARVGNMQDFVREFDVR--------HQIKLEQNYRSYSNILDSANALIAH 314

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +                            +           + +  D      
Sbjct: 315 NSRRLGKNL---------------------------RTTQGPGEPVRVYEAPTDLAE--- 344

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A+ I   I  ++             +   +I VL R    + +I         + 
Sbjct: 345 -----AQWIVDEIRQLVREG---------PMPRSEIAVLYRSNAQSRVIESAL----FNA 386

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            +           +   IK  +A  R + +  DD SF+ ++  P        + ++    
Sbjct: 387 SVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFMRVVNFPPRGIGARTLEQLQDAA 446

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R    ++++ +        +     +  +  +    Q  +       +L +    + + +
Sbjct: 447 RGSGCSLHDAVSSVPGKAGANLGAFVAMVDVMREQTQGRNLRAIIGQVLESSGLLEHYRN 506

Query: 520 RF-GNEVIDVLDEFLNFTLRN--------------------------------------- 539
              G + ++ LDE ++                                            
Sbjct: 507 EKEGADRLENLDELISAAESFVTQEGFGRDAVALPLDETGAALTQSPASQGLDPNRPLLQ 566

Query: 540 ----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               + ++  +L  L + L             A  + V++MTVH +KGLE   VF+    
Sbjct: 567 QPLVDTDTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDCVFIGGME 626

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F H++                                      +   EE  RL+YV 
Sbjct: 627 EGLFPHEN----------------------------------AMSDQGGLEEERRLMYVA 652

Query: 655 MTRASDQLIICKHSNT--SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           +TRA  +L +          + + N R+ +              + +   S   D   A 
Sbjct: 653 ITRARKRLYLSHAQTRLLHGQTRYNVRSRFFDELPEEALKWLTPRQQGFGSYAPDSRAAS 712

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            +                   +  +K    
Sbjct: 713 AYGAGARAGFGFNAAAFASPPVPPRKEEPA 742


>gi|86141573|ref|ZP_01060119.1| putative helicase [Leeuwenhoekiella blandensis MED217]
 gi|85832132|gb|EAQ50587.1| putative helicase [Leeuwenhoekiella blandensis MED217]
          Length = 773

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 115/726 (15%), Positives = 232/726 (31%), Gaps = 133/726 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-ASLTLAKYLNAHYEEA 140
           K +   +   K   +  ++   ++  I ++  F   ++ ++   A       +   Y + 
Sbjct: 126 KEMGLDKDVYKYKQVHSRISSFKNSLITVKAYFQNPELMEADAMAKKPRLGEIYKEYVDR 185

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
             K   +DF+DL++ TN+LL +      +  K  +   +IL+DE QDT+  Q+ ++++L 
Sbjct: 186 CFKAGAMDFDDLLLRTNELLARFPE---VLAKYQKRFQYILVDEYQDTNHSQYLIVKALA 242

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           +            + +  VGD+ QSIY+F GA    +L  +R              +  L
Sbjct: 243 D----------RYQNICVVGDDSQSIYAFRGANINNILNFQRDYD--------DVQVYRL 284

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST +I+   + V    +                       G              
Sbjct: 285 EQNYRSTKNIVEAANSVIEHNQTKLDKVV----------WTANDPG-------------- 320

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              P+     S  D            R +A  I         F     + ++  D  +L 
Sbjct: 321 ---PKIVVHRSLTDGEEG--------RYVASNI---------FETKMNQQLKHSDFAILY 360

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +  +    R      +I               IKD++A  R +++  D+ +   +
Sbjct: 361 RTNAQSRAMEDALR----KREIPYRIFGGLSFYQRKEIKDVLAYLRILINPNDEEALKRV 416

Query: 441 LKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN-------CGISKFQHVIKYIHELI 492
           +  P        + ++     +   +++E ++   +          +K  + +  IH   
Sbjct: 417 INYPARGIGATTLDRLTIASKQYNRSIFEVMENIQHLDININNSTKNKLYNFVNMIHSFK 476

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSS 546
            +++          +       Q+       E    I+ ++E LN        ++    +
Sbjct: 477 IMSENQDAFAVAETVARKTGLLQELKKDGTPEGIARIENIEELLNGMRDFVEGQKEIADA 536

Query: 547 LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
              L   LE            +  + V +MT+H AKGLE P V++V     +F       
Sbjct: 537 TGSLTEFLEDVALATDMDKEVDDIDRVSLMTIHLAKGLEFPYVYIVGMEEDLFPSGMSMN 596

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              +S  EE  RL YV +TRA  Q  + 
Sbjct: 597 T----------------------------------RSELEEERRLFYVALTRAEKQAYLT 622

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              +     K         +      DE+   I+      + + +        P+ + L 
Sbjct: 623 YTESRYRWGKLIDAEPSRFIE---EIDEQFLDIQTPMDTYRYKPMIDSDIFGEPDKSKLR 679

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-----DNQTF 780
            ++ +         P  +  P +  + +   L P          L   L      ++  F
Sbjct: 680 LKKPVS------GTPPIMGKPSEEQLRKLRKLRPQAASAPQTDELNGKLQKGMHVEHSRF 733

Query: 781 NRGLII 786
            RG ++
Sbjct: 734 GRGQVL 739


>gi|121604380|ref|YP_981709.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120593349|gb|ABM36788.1| ATP-dependent DNA helicase UvrD [Polaromonas naphthalenivorans CJ2]
          Length = 781

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 103/695 (14%), Positives = 209/695 (30%), Gaps = 141/695 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+  ++  V+DF +L++ + +LL+     A IR    +   HILIDE QDT+ +
Sbjct: 154 EIYDLYEQQCQREGVVDFGELMLRSYELLRDN---APIREHYQRRFRHILIDEFQDTNKL 210

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  I+ L         +     ++ AVGD+ QSIY+F GA    +    R         
Sbjct: 211 QYAWIKMLAGQGADAMESMPGG-SVVAVGDDDQSIYAFRGARVGNMADFVREF------- 262

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  ++RS  +IL   + + S      G +  +           G+   V   
Sbjct: 263 -NVTHQIKLERNYRSFGNILDSANALISHNTQRLGKNLSTEAG-------PGEPVRV--- 311

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                     + +S    A+     +  ++              
Sbjct: 312 -------------------------YESASDFAEAQWFVDEVRQLVRDG----------A 336

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + K+I +L R    + ++         +  I           +   IK  +A  R + + 
Sbjct: 337 ERKEIALLYRSNAQSRVMESAL----FNASIPYRVYGGLRFFERAEIKHALAYLRLLDNP 392

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD SF+ ++  P        I ++         ++++ +        +     +  +  
Sbjct: 393 HDDTSFMRVVNFPPRGIGARTIEQLQDISNASGCSLHDGVSAVPGKAGANLGAFVAKLDV 452

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNS------ 543
           +      C+  +   L+L      + + + + G + ++ L E +N               
Sbjct: 453 IREQTAGCTLREIIELVLQQSSLVEHYTLDKDGQDRLENLAELVNAAESFVSQEGFGRDA 512

Query: 544 -----------------------------------YSSLQELISELEQYPPTI-KRAHSA 567
                                                +L  L++ L             A
Sbjct: 513 VALPVDELGAGLTQSPASQGLDEPLSEQLAPNLETGETLSPLVAFLTHAALESGDNQAQA 572

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + V++MTVH++KGLE   VF+      +F H++                         
Sbjct: 573 GQDAVQLMTVHSSKGLEFDCVFITGLEDGIFPHENALN---------------------- 610

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                            EE  RL+YV +TRA  +L +          ++          +
Sbjct: 611 ------------DAGGIEEERRLMYVAITRARKRLYLSHSQTRMLHGQTRYNRKSRFFDE 658

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS-- 745
                 +    +     +     +  W           R +        +    + F+  
Sbjct: 659 LPEGALKWLTPRNRGFASGLGSGSGNWGGASNSGAGSARGDWAGGGFHSKSGSAERFASP 718

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
           P+    + P     S ++       E  +   +  
Sbjct: 719 PVPAQKSAPSHGLKSGMNVFHAKFGEGRVEMLEGT 753


>gi|307610545|emb|CBX00132.1| DNA helicase II [Legionella pneumophila 130b]
          Length = 721

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 111/604 (18%), Positives = 198/604 (32%), Gaps = 121/604 (20%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +R +      +  T   ++    +   YE+  + + V+DF +L++ T++LL+  +   
Sbjct: 152 EGLRPQHINALHYGPTKTLVS----IYKAYEDVCQTSGVIDFAELLLRTHELLRDNEE-- 205

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I     +    IL+DE QDT+ IQ+  IR L  D             + AVGD+ QSIY
Sbjct: 206 -ILAHYRERFQAILVDEFQDTNTIQYAWIRLLAGDHTA----------VLAVGDDDQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + + +             +   II L  ++RSTA IL   + +        G 
Sbjct: 255 GWRGAKVENIQQFIHDF--------KDTQIIRLEQNYRSTAMILNAANALIHNNSTRMGK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                +LW        +    ++    S F+ L +       AR
Sbjct: 307 ---------------------ELW-------TAGSEGEKILVYSAFNELDE-------AR 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I   +               A +I VL R    + ++            I+    
Sbjct: 332 FVTERIGMELNQG----------ASADEIAVLYRSNAQSRVLEEAL----LRAGIAYRIY 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                 D   IKD +A  R +++  DD +F  ++  P     E  + ++    R E  ++
Sbjct: 378 GGVRFFDRAEIKDTLAYLRLLVNPNDDTAFERVVNFPTRGIGEKTLDEVRQYARAEQCSL 437

Query: 467 YEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QF 517
           +   +           G       I  I +L  +       +  + ++          + 
Sbjct: 438 WGASKGILQSTGLGQRGSLALAKFIDLIEKLQVVVANKELDEQISDVIQHSGLYAHFSKI 497

Query: 518 ISRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRI 574
                   +D L E +N   +   E +    L  + S L              +   V +
Sbjct: 498 KGDKSESRVDNLQELINAAKQFRYEYDEEEKLPLVNSFLAHASLESGELQADEHERSVHL 557

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE P+VFLV     +F  +                                 
Sbjct: 558 MTLHAAKGLEFPIVFLVGMEEGIFPGRQS------------------------------- 586

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                +    EE  RL YVGMTRA  +L++          +         + +       
Sbjct: 587 ---IEEPGRLEEERRLCYVGMTRAMRKLVLSYAEVRRQYGREEYHRSSRFLREIPQQFLD 643

Query: 695 VKKI 698
             ++
Sbjct: 644 EVRV 647


>gi|237709818|ref|ZP_04540299.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455911|gb|EEO61632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 796

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 99/680 (14%), Positives = 207/680 (30%), Gaps = 126/680 (18%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           A +   + +   Y E  +++  +DF+DL++ T  L +       I  K  ++  ++L+DE
Sbjct: 169 AKVPATRDIYRQYWERCRQSDAMDFDDLLLYTYMLFRDHPE---ICRKYAEQFRYVLVDE 225

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA    +L+  ++ 
Sbjct: 226 YQDTNFAQHSIVLQLTQE----------HQRVCVVGDDAQSIYSFRGANIDNILKFTQLY 275

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                   +   + +L  ++RST  I+   + +             S             
Sbjct: 276 --------KGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIKKEVFS------------- 314

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                           +   +     + +  + +          +A  I  +   +    
Sbjct: 315 ---------------EKAKGEPIGVFNAYSDVEEG-------EIVANQIVKLRSREH--- 349

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                     D  +L R    + +     R       +               IKD+++ 
Sbjct: 350 ------YSYNDFAILYRTNAQSRIFEEALR----KRSLPYKIYGGLSFYQRKEIKDVISY 399

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQKFANC 476
            R  ++  D+ +F  +L  P     +  + K I        +++        Y       
Sbjct: 400 FRLAVNPNDEEAFKRVLNYPARGIGDTTLNKVIDAAAQHHVSLWMVLEEPLAYGLNINKG 459

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
             +K Q   + +   I      + ++   +I+       +       E     + ++E +
Sbjct: 460 MHTKLQGFRELVKSFIVEIPKKNAYELGAMIVRQSGIMNEIYQSNDPENLSRQENIEELI 519

Query: 534 N------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           N           E N    L + +SE+             +  ++ +MT+H+AKGLE   
Sbjct: 520 NGMHDFCAIREEEGNENILLTDFLSEVSLLTDQD-NEKEEDAEKIILMTIHSAKGLEFKN 578

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VF+V     +F        +                                     EE 
Sbjct: 579 VFVVGLEENLFPSALSLNSY----------------------------------KELEEE 604

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA +   +    +     K    +    + D   +  ++ + +       +
Sbjct: 605 RRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRFLKDIDVHFLKLPQEEQMARRIDE 664

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPSTIDTK 765
               +    +   +  L  E   +                      P    + PS     
Sbjct: 665 RASRFCREQNERASRFLFDESASQPSYGRSSSNLSGGQKSFFIGERPKAEIIRPSVPRNL 724

Query: 766 GKTNLESLLSDNQTFNRGLI 785
            K  L    + ++ F  G +
Sbjct: 725 TKVGL---ATVSKPFAAGTL 741


>gi|297564148|ref|YP_003683121.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848597|gb|ADH70615.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 781

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 110/743 (14%), Positives = 212/743 (28%), Gaps = 133/743 (17%)

Query: 1   LKNRFGLSLNESYE-LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           L    G+   E                ++  +    + +            + L++ +  
Sbjct: 47  LMAARGVRPGEILAITFTNKAAAEMRERIQALLGVRAANSMWTMTFHSACVRILRREAAR 106

Query: 60  QCIEERFSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                 F++  S    +      K +              ++   ++E +       T+ 
Sbjct: 107 LGYPSSFTIYDSADSARLMQLVCKEMDLDPKRFPPKSFSAQVSNLKNELVDYD----TFA 162

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
               T     LA+     Y+    +   +DF+DLI+ T +L +   +   +     +   
Sbjct: 163 GQAQTEQEKKLAEA-YQLYQRRLHEAGAMDFDDLIMVTVNLFQ---MFPDVAEYYRRRFR 218

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           H+++DE QDT+  Q+  IR L         +   P  L  VGD  QSIY+F GA  + +L
Sbjct: 219 HVMVDEYQDTNHAQYVFIRELVGVAEGSDTSVVPPAELCVVGDADQSIYAFRGATIRNIL 278

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             +R               I L  ++RST  IL+  + V    E     +  S       
Sbjct: 279 EFERDFP--------DARTILLEQNYRSTQTILSAANAVIDRNEGRPAKNLWS------- 323

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                               +    P    + +         +    A  +   I  +  
Sbjct: 324 --------------------EQGDGPAIVGYVA--------DNEHDEAAFVVGEIDKLTD 355

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T         +    + V  R    + +   +         +           +   I
Sbjct: 356 DGT---------LTPSQVAVFYRTNAQSRVFEDVF----IRTGLPYKIVGGVRFYERKEI 402

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG 477
           +D++A  R + + ED +S   +L  P           I      E  +    +++     
Sbjct: 403 RDVLAYLRVLANPEDTVSLRRILNVPKRGIGARAEESIELFAARERISFSRALRRVEEIP 462

Query: 478 ISKFQ------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDV 528
               +      +    + EL       +P +    +L       +       +    ++ 
Sbjct: 463 GMAARSVKAVLNFTALLEELEQTVPEGTPAEIVEAVLSKTGYLSELAESKDLQDESRVEN 522

Query: 529 LDEFLNFTLRNEQN----------------------SYSSLQELISELEQ-YPPTIKRAH 565
           L+EF++     E                           +L + +  +            
Sbjct: 523 LEEFVDVAREFEHTFAALLEEEPTEDGEEAAGAVDPGAPTLVDFLERISLVADTDQIPDE 582

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                 V +MT+H AKGLE P VFL      VF H                         
Sbjct: 583 DDEGGVVTLMTLHAAKGLEFPAVFLTGMEDGVFPHTRTLG-------------------- 622

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                          K+  EE  RL YVG+TRA   L + + +  S     +       +
Sbjct: 623 --------------DKTQLEEERRLAYVGLTRAQRLLYVSRAAVRSAWGTPSYNPASRFL 668

Query: 686 YDSFHNDERVKKIKLTNSINKDE 708
            +   +    ++ + T +     
Sbjct: 669 DEIPSSLVDWRRAESTLAAPPSR 691


>gi|225849851|ref|YP_002730085.1| putative UvrD/REP helicase [Persephonella marina EX-H1]
 gi|225645334|gb|ACO03520.1| putative UvrD/REP helicase [Persephonella marina EX-H1]
          Length = 1021

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 154/949 (16%), Positives = 325/949 (34%), Gaps = 123/949 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ-ASQTQCIEERFSLLSSFFL 74
            IY +LW +  ++   I +            +      ++         +E          
Sbjct: 158  IYANLWKIERYRKESIEEREGYIKRLKEKALKLLDDFIKDHYRDFVDSQEFLKTDLKDIY 217

Query: 75   TQKFTPQKNIITQEINKKSPDL----------------KEKLKKSQDEFIKIRDRFNTYK 118
            T+    +   I  E NK  P L                KEK+ + +D+ I   +      
Sbjct: 218  TKIKQERFTQIKVEKNKNFPKLLKHKNVKNHRSLKSLDKEKVLELEDQLINTLEELRNNA 277

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            ++ + L  L         +EE K++N ++ + D+I+ + ++  +      +  +  +   
Sbjct: 278  LYLNFLIILDNFDEFLQIFEEKKRENHLITYSDIILRSKEIFLRYPD---LLEEYRERFK 334

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
               IDE QDT  IQ ++IR L+E              L   GD KQ IY +  A+    +
Sbjct: 335  AFFIDEFQDTDQIQTDIIRMLSE-----------RSDLIVFGDPKQCIYEWRSADLYNYI 383

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                  ++R            L + +RS   ++   +  F   +    L+ D +      
Sbjct: 384  SFTEDFEER-----------TLNVCYRSGPSLVGFFNLFFVEND---FLNRDYSNRKVKE 429

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
               + +    +L+           + +    T   + +  ES    +A  +A  I  ++ 
Sbjct: 430  LYHLEEKYIPELFY---------SSEKSLDITDPVEIVKTESDTEPVA--LAEKIKQLLN 478

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +              +DILVL R R  T       R       I  +        + + +
Sbjct: 479  SG----------YSPEDILVLFRSRSKTDRYIQELR----KSNIPFISFLSSNFYNSVEV 524

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
              ++ + + I    D L+ + +LKSP+F+FS+ +I++I                     I
Sbjct: 525  ITVLNILKLIQYPYDQLTLLKVLKSPVFSFSDKEIYQIR-------------NDLYIDRI 571

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTL 537
             + +     I  L  I    +       +       + F +   G + +  L++      
Sbjct: 572  PQLKE----IKRLEEIKDSLNISQILDRVYRDLPVLEIFSLYPDGKQKVANLEKLKFIAD 627

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAH--SANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            R E  ++  L++ I  LE      +     + +   V++MT+H +KGLE+ VV +     
Sbjct: 628  RLEGENFQ-LRDFIQFLEDNRYKDEEDALITTDDRFVKVMTMHRSKGLEAKVVIIPGLSE 686

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            ++    +        ++ D+  + I    ++     ++   + +K+    E  RLLYV  
Sbjct: 687  RINRSTNG-----FFTVEDEIMVRIRDDYNREVARTLNFDEEKVKRKIYLEEKRLLYVAF 741

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA ++LI+    +     +           +     +  K +     I   E      +
Sbjct: 742  TRAKERLILFYSGSKGYMNEIETVIERINGKEVTVYTQDRKPVSFKLEIKMTEPSGISNN 801

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-----------PSTIDT 764
              +  +    ++  I + +   K  ++             I              S ++ 
Sbjct: 802  IRYWSDIIKRQDRNIMEKLKLLKDEEEGRKEEFEKAVSAKIFTTVSALIDEKNEKSVVEE 861

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKN 823
               +  +SL   +     G+I+HK+L+         + +N I     + + L        
Sbjct: 862  FQISEDDSLKERDIPVETGIIVHKILEYFSFPEDLKEAENEIEELFERFSGLITEDNRDK 921

Query: 824  L----LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPKKDIIISGRIDQISISQQNI 878
            +    L  + R + +       S    + E+  +      +    I G+ID +      I
Sbjct: 922  VRDISLEKLKRFIRSDAYKDISSSRIIFREMPFT----LKEGGRYIEGKIDIVYEKNGVI 977

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            ++ +YKT     +        +  Q   Y +++K  +P++ +    IY+
Sbjct: 978  YVGDYKTGRIKDE------EKYRPQERYYTEVIKKIFPDREMKFRFIYL 1020


>gi|261378597|ref|ZP_05983170.1| DNA helicase II [Neisseria cinerea ATCC 14685]
 gi|269144930|gb|EEZ71348.1| DNA helicase II [Neisseria cinerea ATCC 14685]
          Length = 735

 Score =  287 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 100/582 (17%), Positives = 194/582 (33%), Gaps = 118/582 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++  ++  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +  +             +FAVG
Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A+ I      +                  +I VL R    + +I           
Sbjct: 333 -----AQFIVDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IK  +A  R  ++ +DD + + ++  P        I  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTIENLQTAS 433

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E           A+   +K    ++ I  L +        +    IL      + + ++
Sbjct: 434 NEQGITLWQAACNASAKAAKVAAFVRLIEALRNQVGQMPLSEIIVGILKDSGLTEHYQTQ 493

Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566
            G   + +D LDE +N  +    E +++ +L E         +++ L        +    
Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQAG 553

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A    V++MTVH +KGLE   VFL       F  +                         
Sbjct: 554 AGEKAVQLMTVHASKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                        ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|213962690|ref|ZP_03390951.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno]
 gi|213954685|gb|EEB66006.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno]
          Length = 783

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 195/615 (31%), Gaps = 127/615 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFEDL 152
           K+ Q     +++   T + + +    +             +   Y E   K   +DF+DL
Sbjct: 141 KQIQQRISSLKNNLITVRAYFNNPELVENDAIRKQPRFGEIYQEYVERCFKAGAMDFDDL 200

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           ++ TN+LL    V   +  K      +IL+DE QDT+  Q+ ++++L + F         
Sbjct: 201 LLKTNELLN---VYPEVLAKYQNRFQYILVDEYQDTNHSQYLIVKALADRF--------- 248

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
              +  VGD+ QSIY+F GA    +L  K    +            +L  ++RST +I+ 
Sbjct: 249 -HNICVVGDDAQSIYAFRGANINNILNFKSDYPE--------AKEYKLEQNYRSTKNIVE 299

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
             + V    +                                    +++     +   S 
Sbjct: 300 AANSVIEHNKVRLDKVVF---------------------------TENEMGELIKVHRSP 332

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
            D+           R +A +I         F N  +  +      VL R    +  I   
Sbjct: 333 TDADEG--------RFVASSI---------FENKMQHQLANGKFAVLYRTNSQSRAIEDA 375

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R       I               IKD++A  R I++  D+ + V ++  P     E  
Sbjct: 376 LR----KRDIPYRIYGGLSFYQRKEIKDMLAYLRLIINPNDEEALVRIINFPARGIGETT 431

Query: 453 IFKICTQRHE-TETVYEYIQK--------FANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
           + K+    +   ++++E +            +    K    +  I  L  + Q  +  + 
Sbjct: 432 MEKLTLAANHYKKSIFEIMYNVNKLPELHINSTTKQKLTDFVVMIFNLQALNQRANVFEV 491

Query: 504 FTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN---EQNSYSSLQELISELEQY 557
              +       Q+F      E    ++ ++E LN        +++   S   L   LE  
Sbjct: 492 AEQVAKKTGLLQEFKKDGTPEGIAKMENIEEMLNGMKDFVIGQEDVADSTGSLAEYLEDV 551

Query: 558 PPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      + + V +MT+H AKGLE P V++V     +F                  
Sbjct: 552 SLATDSDKEIGDDDRVALMTIHLAKGLEFPYVYIVGMEEDLFP----------------- 594

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   +   EE  RL YV +TRA  Q  +            
Sbjct: 595 -----------------LAKSIQSRDELEEERRLFYVALTRAEKQAYLTYAERRYRFGNL 637

Query: 677 NQRTWYDMVYDSFHN 691
           +       + +    
Sbjct: 638 SDTEPSRFIEEIDER 652


>gi|255037536|ref|YP_003088157.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
 gi|254950292|gb|ACT94992.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
          Length = 755

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 107/656 (16%), Positives = 214/656 (32%), Gaps = 116/656 (17%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           +  ++  +++  I   D  N   + +   A+ +     L   Y     +   +DF+DL+ 
Sbjct: 141 VFNRISGAKNRLISADDYINNAIIQQDDEAAKMKEIGRLYKTYATRCFQANAMDFDDLLF 200

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
           NTN L +       + YK   +  H+++DE QDT++ Q+ + R L+             R
Sbjct: 201 NTNVLFRDFPD---VLYKYQHKFQHVMVDEFQDTNVSQYLITRKLSA----------VHR 247

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIY+F GA  + +L  ++              +I+L  ++RST+ I+   
Sbjct: 248 NIVVVGDDAQSIYAFRGANIENILNFEKDFP--------DVRVIKLEQNYRSTSTIVNAA 299

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + V +  ++             H  +   +   + + +      +               
Sbjct: 300 NSVIARNKSQLEK---------HTFTSNEEGSLIDVIKAGSDNEEG-------------- 336

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                       R IA  I         F    ++ ++ +   +L R    +       R
Sbjct: 337 ------------RLIATAI---------FEEKMQKALRNEHFAILYRTNAQSRSFEEALR 375

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            L     I               IKDL+A  RF ++Q D+ +F  ++  P     +  + 
Sbjct: 376 KL----GIKYRIVGGQSFYQRKEIKDLLAYLRFTVNQRDEEAFKRIINLPKRGIGDTTVA 431

Query: 455 KI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLIL 508
           KI  T       +++ +      G  +    I+    LI   +         ++  + I 
Sbjct: 432 KIAVTASENNVAIWDVVANINQYGTGRTIAPIEGFGTLIKSFKILVEEGKDAYEISSHIA 491

Query: 509 GAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTIK 562
            A    ++       E     + + E LN        ++    SL   +  +       +
Sbjct: 492 KASGILRELYEDKTVEGLSRYENVQELLNGIKEFVDSDETEDKSLSAFLQSVSLLTNADE 551

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
              + +H+ V +MT+H+AKGLE   VF+V     +F  + +                   
Sbjct: 552 PDDNNDHDRVTMMTIHSAKGLEFRNVFIVGLEEDLFPSQMML------------------ 593

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                             +   EE  RL YV +TRA  +L      +     +       
Sbjct: 594 ----------------ESRQDLEEERRLFYVAITRAEKKLSFSYAESRYQWGRLKMCEPS 637

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
             + +       V K+  +            ++ +  +     +            
Sbjct: 638 RFLLEVEQKYLNVNKMVQSALERDTTPPVTTFARNLVQRKTEAKPAVTAATSHVPS 693


>gi|111022536|ref|YP_705508.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110822066|gb|ABG97350.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 828

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 99/639 (15%), Positives = 189/639 (29%), Gaps = 141/639 (22%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +     +    K       L   +  HY++  +    LDF+DLI  T  +L+       +
Sbjct: 179 VDPDQASADADKDPAELPRLIAKVYGHYQQRLRSANALDFDDLIGETVAMLQ---AFPQV 235

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS--PRTLFAVGDEKQSIY 227
                +   H+L+DE QDT+  Q+ ++R L      G++      P  L  VGD  QSIY
Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGTADGEDADHRVAPAELCVVGDADQSIY 295

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA  + +   +R               I L  ++RST +IL+  + V S     +  
Sbjct: 296 AFRGATIRNIEEFERDYP--------DARTILLEQNYRSTQNILSAANSVISKNTGRREK 347

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW             +  +     +   +       A 
Sbjct: 348 R---------------------LW-------TDSGVGELITGYVADNEHDE-------AS 372

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I  ++ +            +  D+ V  R    +  +  +         +     
Sbjct: 373 FVASEIDKLVDSG---------DAKFGDVAVFYRTNNSSRALEEIF----IRLGVPYKVV 419

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                 +   ++D++A  R + ++ D +S   +L +P     +     +         + 
Sbjct: 420 GGVRFYERKEVRDIVAYLRVLANENDTVSLRRILNTPRRGIGDRAEACVAVHSEQRGISF 479

Query: 467 YEYIQK--------FANCGISKFQHVIKYIHELIHIAQFCS------------PHDFFTL 506
            E ++                     ++ +  L  +    +              D    
Sbjct: 480 AEALRDGGEGRVPLLNTRSQKAIASFLELMDGLRVLLPPETTADDVVPDQLGDIGDVVEA 539

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--------------------EQNS 543
           +L     R +  +    +    +D L+E ++                          ++ 
Sbjct: 540 VLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARNAAGLVEPPEDGDVDARDG 599

Query: 544 YSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + LE+             +   V +MT+HTAKGLE PVVF+       F H 
Sbjct: 600 EPDPGSLAAFLERVSLVADSDQLPDNDEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHM 659

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                       E  RL YVG+TRA  +
Sbjct: 660 RALGDPT----------------------------------ELSEERRLAYVGITRARQR 685

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           L + +    S   +  Q      + +   +    ++   
Sbjct: 686 LYLTRAVMRSAWGQPIQNPESRFLQEIPSDLVHWRREDP 724


>gi|89901667|ref|YP_524138.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89346404|gb|ABD70607.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
          Length = 1165

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 160/952 (16%), Positives = 322/952 (33%), Gaps = 105/952 (11%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
             D       +   +    +        T   K   L+ A  +  +   F+ L    LT K
Sbjct: 281  DDFLRDQPQRWQILLDAAAALGRASAKTFAAKGVELEMALSSGDLSAAFAAL----LTDK 336

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
              P+K               E ++++QD  +++      +  +        L + L   +
Sbjct: 337  DAPRKFSEKIAG-------IEAVREAQDLVLRVVAARLQHAAWTYQQRMARLTRALLKEF 389

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
               K+++  +D  D+      +L    +  W++ ++D  I H+LIDE QDT+ +QW+ ++
Sbjct: 390  AALKREHGWVDMNDVERAALVMLSDPVLCGWVQERLDARIKHLLIDEFQDTNPLQWQALK 449

Query: 198  SL-----TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            S                 ++   +F VGD KQSIY F  AEP+          K     G
Sbjct: 450  SWLSGYAGTGGGASGGAGATAPRVFIVGDPKQSIYRFRRAEPQVFKAA-----KAFVRDG 504

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                ++    + R+   ++ VV+ V +    A G          H +S        +L  
Sbjct: 505  LNGDLLSCDHTRRNATGVIAVVNAVMTQAVQADGYEGFRA----HTTSASELGLVCKLPP 560

Query: 313  QVVSQ----------HDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGT 359
                +                     W    D    LP+E+  ++ AR+ A+ I+  + +
Sbjct: 561  IARPERLAGAASSGDETEGGGTASAGWRDSLDTPRELPEETLRTLEARQAAHWIAQQLAS 620

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                   + R +QA D++VL RKR     +    R L    +I     ++  L D   ++
Sbjct: 621  AETPDT-EGRGLQAADVMVLSRKRAGLLPLQLELRKLHIAAQI----GEKTNLIDCCEVQ 675

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            DL+AL   ++S   DLS   +LKSPLF+ ++  + ++                F     S
Sbjct: 676  DLVALLDVLVSPRHDLSLARVLKSPLFDMTDAALVQLAQAVRAQSQPPADGSWFDVLQKS 735

Query: 480  KF-----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLD 530
            +      + +   +           PHD    I        +F +       D     L 
Sbjct: 736  ELSTQDGRGLAACLMRWKGWLDQWPPHDALQAIYFDGDVLARFAAAAPASQRDAVLANLT 795

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              L  +L+ +   +S+    +         +    + N   VR++TVH AKGLE+ VV L
Sbjct: 796  ALLGMSLQLDGGRFSTPYAFVR--ALKGGGVLAPAAVNPQAVRLLTVHGAKGLEAQVVLL 853

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            +DT +   +   +  +   P     P   +++             ++  +   Q E    
Sbjct: 854  LDTDTPERNADTMGVLIDWPGEAAWPSKFVFLASESQPPACAVPTLEAERLERQREELNA 913

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV +TRA   L I   +   + ++S  +   D+   +           L +++   + +
Sbjct: 914  LYVALTRARRTLAISSIAPYRSAERSWWQRLSDLAQPAVPAGAAALAAPLPDAVTVADAV 973

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
             Y                                     +  +  I + + +      + 
Sbjct: 974  FYIKELPL----------------------------APVEYRQVAIKSEANLGGSRGGDD 1005

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
             +  +D  +   G  +H+LL+                +          ++         R
Sbjct: 1006 ANADADALSARLGKAMHRLLEW-GDATPANTAACAREFA------LTPEQGAQAAAMAAR 1058

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-----ISQQNIFIFEYKT 885
            +L+      A      +      ++    + + +    D++          + ++ +YK+
Sbjct: 1059 ILQGE-GAWAWDNTRLAWQGNEIELLYQGQCLRL----DRLVQRTDAQHAGHWWVLDYKS 1113

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
                P E   +    +AQL  Y   ++  YP+  +    +  +   +  + +
Sbjct: 1114 -APAPHEQAEL----LAQLRDYRAAVQAIYPDAVVKAAFL-TAHGALIEVNE 1159


>gi|54297755|ref|YP_124124.1| DNA-dependent helicase II [Legionella pneumophila str. Paris]
 gi|148359389|ref|YP_001250596.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str.
           Corby]
 gi|296107435|ref|YP_003619135.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella
           pneumophila 2300/99 Alcoy]
 gi|53751540|emb|CAH12958.1| DNA helicase II [Legionella pneumophila str. Paris]
 gi|148281162|gb|ABQ55250.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str.
           Corby]
 gi|295649336|gb|ADG25183.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 721

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 111/604 (18%), Positives = 199/604 (32%), Gaps = 121/604 (20%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +R +      +  T   ++    +   YE+  + + V+DF +L++ T++LL+  +   
Sbjct: 152 EGLRPQHINALHYGPTKTLVS----IYKAYEDVCQTSGVIDFAELLLRTHELLRDNEE-- 205

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I     +    IL+DE QDT+ IQ+  IR L  D             + AVGD+ QSIY
Sbjct: 206 -ILAHYRERFQAILVDEFQDTNTIQYAWIRLLAGDHTA----------VLAVGDDDQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + + +             +   II L  ++RSTA IL   + +        G 
Sbjct: 255 GWRGAKVENIQQFVHDF--------KDTQIIRLEQNYRSTAMILNAANALIHNNSTRMGK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                +LW        +    ++    S F+ L +       AR
Sbjct: 307 ---------------------ELW-------TAGSEGEKILVYSAFNELDE-------AR 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I   +               A +I VL R    + ++            I+    
Sbjct: 332 FVTERIGMELNQG----------ASADEIAVLYRSNAQSRVLEEAL----LRVGIAYRIY 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                 D   IKD +A  R +++  DD +F  ++  P     E  + ++    R E  ++
Sbjct: 378 GGVRFFDRAEIKDTLAYLRLLVNPNDDTAFERVVNFPTRGIGEKTLDEVRQYARAEQCSL 437

Query: 467 YEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QF 517
           ++  +           G       I  I +L  +       +  + ++          + 
Sbjct: 438 WDASKGILQSTGLGQRGSLALAKFIDLIEKLQVVVANKELDEQISDVIQHSGLYAHFSKI 497

Query: 518 ISRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRI 574
                   +D L E +N   +   E +    L  + S L              +   V +
Sbjct: 498 KGDKSESRVDNLQELINAAKQFRYEYDEEEELPLVNSFLAHASLESGELQADEHERSVHL 557

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE P+VFLV     +F  +                                 
Sbjct: 558 MTLHAAKGLEFPIVFLVGMEEGIFPGRQS------------------------------- 586

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                +    EE  RL YVGMTRA  +L++          +         + +       
Sbjct: 587 ---IEEPGRLEEERRLCYVGMTRAMRKLVLSYAEVRRQYGREEYHRSSRFLREIPQQFLD 643

Query: 695 VKKI 698
             ++
Sbjct: 644 EVRV 647


>gi|256380499|ref|YP_003104159.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827]
 gi|255924802|gb|ACU40313.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827]
          Length = 781

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 96/616 (15%), Positives = 186/616 (30%), Gaps = 128/616 (20%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
            +    +          +   Y+    ++  +DF+DLI+ T +LL+       +     +
Sbjct: 170 AHAAEVAGNDLERRVAEVYGAYQRRLVESNSMDFDDLIMRTVELLQNNPA---VAEHYHR 226

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
              H+L+DE QDT+  Q+ ++R L      G      P  L  VGD  QSIY+F GA  +
Sbjct: 227 RFRHVLVDEYQDTNHAQYTLVRELVGTGSDGV----PPAELCVVGDADQSIYAFRGATIR 282

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            ++  +R   +         + + L  ++RST  ILT  + V S   + +     S    
Sbjct: 283 NIVEFERDYPQ--------ATTVLLEQNYRSTQTILTAANAVISRNPDRRDKRLWSDL-- 332

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                                      + ++       +   +       A  +A  I  
Sbjct: 333 --------------------------GDGEKIVGYVADNEHDE-------AAFVAREIDR 359

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           ++      +          +I V  R    + +   +         +           + 
Sbjct: 360 LVDGGDANN---------GEIAVFYRTNNQSRVFEEIF----IRLGLPYKVVGGVRFYER 406

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA- 474
             ++D +A  R + + +D +S   +L  P     +     + T        +    + A 
Sbjct: 407 REVRDALAYLRVLSNPDDTVSLRRVLNVPKRGIGDRAEACVATYAERERVSFATALRAAV 466

Query: 475 --------NCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE- 524
                             ++ + EL    +           +L     R +  +    + 
Sbjct: 467 AGKVPLLNPRSQRAISGFVELLDELRAGVERGDDVASVLEEVLDRTAYRAELEASDDPQD 526

Query: 525 --VIDVLDEFLNFTLRNEQNS------------------YSSLQELISELEQYPPTIKRA 564
              ++ L+E +       + S                    SL   +  +       +  
Sbjct: 527 HTRVENLNELVTVAREFGELSAVEPDGEPVEEPDPGQPVAGSLDAFLERVSLVADADQVP 586

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            + +   V +MT+HTAKGLE PVVF       VF H                        
Sbjct: 587 DAESDGVVTLMTLHTAKGLEYPVVFCTGWEDGVFPHTRALGDP----------------- 629

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                            +   E  RL YVG+TRA  +L + +    S   +         
Sbjct: 630 -----------------AELSEERRLAYVGITRAQQRLYLSRALVRSAWGQPAANPASRF 672

Query: 685 VYDSFHNDERVKKIKL 700
           + +   +    K+ + 
Sbjct: 673 LDEIPADLLEWKRAEP 688


>gi|59710675|ref|YP_203451.1| DNA-dependent helicase II [Vibrio fischeri ES114]
 gi|59478776|gb|AAW84563.1| DNA-dependent ATPase I and helicase II [Vibrio fischeri ES114]
          Length = 733

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 117/691 (16%), Positives = 224/691 (32%), Gaps = 132/691 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   Q S  +             +  + + L   S        
Sbjct: 30  GAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTNKAAAEMRGRIEELMHGSAGGMWNGT 89

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
           F              + L   F       Q+ ++ + I  ++ D K    +    FI  +
Sbjct: 90  FHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKAQNLDDKNWPARQAAWFINGK 149

Query: 112 --DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +    +++             + + Y+EA  +  ++DF ++++  ++LL+       I
Sbjct: 150 KDEGLRPHQINSFNDPITQTWLKVYSAYQEACDRAGLVDFAEILLRAHELLRDH---KHI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R        HIL+DE QDT+ IQ+  +R +            S   +  VGD+ QSIY +
Sbjct: 207 REHYQARFKHILVDEFQDTNNIQYAWLRMMAG----------SDCDVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                  I L  ++RSTA+IL   +++ S      G   
Sbjct: 257 RGAQIENIQKFLDEF--------VGAKTIRLEQNYRSTANILNAANELISNNTERMGKK- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW                S  S ++ L +       AR  
Sbjct: 308 --------------------LW-------TEGVEGDLISIYSAYNELDE-------ARFA 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     D   L R    + ++            +       
Sbjct: 334 VGKIKEWRDNGGALE----------DSAFLYRNNAQSRVLEEAL----IQAGLPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
               +   IKD ++  R + ++ DD +F  ++ +P     +  +  +    R    T+++
Sbjct: 380 MRFFERQEIKDALSYLRLMNNRNDDAAFERVVNTPTRGLGDKTLETVRFAARERGATMWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                                 I+ I+ L    + C  H+    ++ +      +    G
Sbjct: 440 ASIALIEEQVLPGRAAGALSRFIELINALEDDTRDCRLHEQTDQVIKSSGLFAMYEQEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    I+ L+E +  T + E+      + +L + L        +       + V++MT+
Sbjct: 500 EKSKARIENLEELVTATRQFEKPEEAEEMTDLTAFLTHAALEAGEGQADEFEDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPLVFMVGVEEGMFPSQMS---------------------------------- 585

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             +    EE  RL YVGMTRA ++L I    
Sbjct: 586 AEEAGRLEEERRLCYVGMTRAMEKLYITYAE 616


>gi|256112427|ref|ZP_05453348.1| ATP-dependent nuclease subunit A [Brucella melitensis bv. 3 str.
           Ether]
          Length = 440

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 129/434 (29%), Positives = 196/434 (45%), Gaps = 25/434 (5%)

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           EF N+ L  E+     LQ  +  LE   P IKR      +EVRIMTVH AKGLE  VVFL
Sbjct: 1   EFQNYALSAERAGLPGLQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFL 60

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           VD GS V++     K+       D P +   +W P S  +    +  I+ LK   +EEY 
Sbjct: 61  VDPGSAVWTGSRAPKLIPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYR 120

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           RLLYVGMTRA D+LIIC +       + +  TW+ +V D+           +T       
Sbjct: 121 RLLYVGMTRAEDRLIICGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV----- 171

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
             A       P +     EE         ++P     P+K +   P  L PS      + 
Sbjct: 172 --AARRYRKTPRSFIEINEEDQAGATSLPQLPHDYRQPMKAEPGLPRPLAPSGASALIEA 229

Query: 769 NLESLLS------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
           + E  L                   RG  IH LLQ +  +   KR++    Y  + A  W
Sbjct: 230 DEEPPLDLSSPVLQPGTGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADW 289

Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
           P  E      S+  +L++P      +  S  EV+V G I+   +D  +SG+ID+IS+ + 
Sbjct: 290 PDAERLKAWQSVHAILDDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDES 349

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            + I +YKT+   P+ +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P
Sbjct: 350 RVLIVDYKTNRPPPKTLEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVP 409

Query: 937 QNKLNKAFAEISTK 950
              L+ A   +   
Sbjct: 410 DAVLDDAMGALKDT 423


>gi|227502912|ref|ZP_03932961.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227076334|gb|EEI14297.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 1059

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 134/1019 (13%), Positives = 269/1019 (26%), Gaps = 158/1019 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +          L       +    S  + T           ++        E+    ++ 
Sbjct: 114  TVATYDSYAGELVREYGLLVPVEPSARIITEAERFAIAYDVVKNYGGKLSDEKTLGSITE 173

Query: 72   FFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              L        ++   + I + + D +  +   +       +     + + +        
Sbjct: 174  VLLKITSDMDNSLKDPDDIAEFARDFRADIDNLEKAPRTKGEYSKDLQKYINVQDLRVQY 233

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              L    +  + +  V+ F + +     L ++      +  +  Q    +++DE QDTS 
Sbjct: 234  VPLIEELKRTQAEQQVITFGEQMSVAARLAQEHPA---VGKQQAQRYRVVMLDEYQDTSY 290

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q  ++RSL               ++ AVGD  Q+IY + GA  + +        +    
Sbjct: 291  AQRVLLRSLF-------GGEHKDISVTAVGDPMQAIYGWRGATSENLTAFVEDFPQ---A 340

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             G      +L  S+R+ +  L + + V +          D      H+       G ++L
Sbjct: 341  DGTPAPKDQLTTSWRNPSGALELANSVAAGVFGGGPRPVDELHAAPHK-----GEGEIEL 395

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                    +                             IA  +                 
Sbjct: 396  GYFASEDEE--------------------------HEFIAQKLKQQWDAREGDGFRA--- 426

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                   VLVR  + T  I        +   +    N    L     I+DL+AL   ++ 
Sbjct: 427  ------AVLVRTNRQTAAIAAA----LDAVDVPNEINGLGGLLWQPEIQDLVALATMLVR 476

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS----------- 479
             ED  + + +   P+      DI  +  ++       +   ++                 
Sbjct: 477  PEDAQAALRIFAGPICGLGMGDIQALAARQKNLAGAKQERLQWEEGMDPEEYLRAQLAQL 536

Query: 480  ------------------------------KFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                                          + + V   +  L   +      D F  I  
Sbjct: 537  TAEGPDQTVGLADALADLGERDRYTPQGLARMEEVSAKLRYLRTYSLSKPLSDLFADIEA 596

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AH 565
                R + ++R        LD+F +           SL  L+  LE              
Sbjct: 597  IFNIRTEVLARGSAGGATHLDKFADIVAGF---HGDSLYALLDYLELAREHEDGLELGEV 653

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ- 624
             A+ + V+IMTVH AKGLE   V++V   S  +  +    +  +  +  D       P  
Sbjct: 654  PASTDRVQIMTVHKAKGLEWEHVYVVHADSSSYKAQAETFLSKIEKVPGDNDYIEVSPDA 713

Query: 625  --SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                         +   +    EE  RL YV +TR    L +      +   K+ +  + 
Sbjct: 714  VTRSEFEKACKAFLDDDRAHNAEEAARLFYVALTRTESTLTVTGSGTNNRTGKAKKGPYE 773

Query: 683  DM----------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +          V +    +E V+             +  +  +    +  L   E + +
Sbjct: 774  YLERLKETFPQYVGEWTVPEEPVETSAHAAESGLFPALEADPDSLAGADAVLAAMEDLPE 833

Query: 733  LMDEQKIPKK------------LFSPIKNDINEPYILNPST--------IDTKGKTNLES 772
            L   +                        D+  P  L  S         +    +     
Sbjct: 834  LSHGETFELWEQDAGALIEEYKSLQQPVVDVELPSELTASDMVALGSDPLQFARRQRRPV 893

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                N    RG   H  L+        +R         +        E  +L       L
Sbjct: 894  PFKPNSYAKRGTAFHAWLE--------ERFGSPALLGEEELPGIDEPEDFDLEELKESFL 945

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQ 891
             +                V           ++ GR+D +   +     + ++KT      
Sbjct: 946  NSEWAQ-------RQPDFVEAPFEITIGSAVVRGRMDAVFRLADDTWMVVDWKTGRPPKG 998

Query: 892  EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                       QL++Y +  +  +    +     YV +   F        +    +   
Sbjct: 999  TAMEAA---KIQLAVYAEAWRRIHGGDKIRAAFHYVHDGYTFEPDTLAQGEELRSLLES 1054


>gi|209693834|ref|YP_002261762.1| DNA-dependent helicase II [Aliivibrio salmonicida LFI1238]
 gi|208007785|emb|CAQ77907.1| DNA helicase II UvrD [Aliivibrio salmonicida LFI1238]
          Length = 734

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 114/694 (16%), Positives = 226/694 (32%), Gaps = 132/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   Q S  +             +  + + L   S        
Sbjct: 30  GAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTNKAAAEMRGRIEELMHGSAGGMWNGT 89

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
           F              + L   F       Q+ ++ + I  ++ D K    +    FI  +
Sbjct: 90  FHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKAQNLDDKNWPARQAAWFINGK 149

Query: 112 --DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +    +++             +   Y+EA  ++ ++DF ++++  ++LL+      +I
Sbjct: 150 KDEGLRPHQINSFNDPIAETWLKVYRAYQEACDRSGLVDFAEILLRAHELLRDH---QYI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    HIL+DE QDT+ IQ+  +R +            S   +  VGD+ QSIY +
Sbjct: 207 CEHYQARFKHILVDEFQDTNNIQYAWLRMMAG----------SDCKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R                  I L  ++RSTA+IL   +++ S      G   
Sbjct: 257 RGAQIENIQRFLNEF--------VGAKTILLEQNYRSTANILNAANELISNNTERMGK-- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW           + +  S  S ++ + +       AR  
Sbjct: 307 -------------------ELW-------TEDADGELISIYSAYNEMDE-------ARFA 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     D   L R    + ++            +       
Sbjct: 334 VGKIKEWRDNGGALE----------DTAFLYRNNAQSRVLEEAL----IQAGLPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IKD ++  R + ++ DD +F  ++ +P     +  +  +    R    T+++
Sbjct: 380 MRFFERQEIKDALSYLRLMNNRNDDAAFERVVNTPTRGLGDKTLETVRLAARERGATMWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                                 ++ I+ L    + C  H+    ++ +      +    G
Sbjct: 440 ASIALIEEQVLPGRAAGALGRFVELINALEDDTRDCRLHEQTDQVIKSSGLFTMYEQEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    I+ L+E +  T + ++      + +L + L                + V++MT+
Sbjct: 500 EKSKARIENLEELVTATRQFDKPEEAEEMTDLTAFLTHAALEAGDGQADEFEDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPLVFMVGVEEGMFPSQMS---------------------------------- 585

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             +    EE  RL YVGMTRA ++L I       
Sbjct: 586 AEEAGRLEEERRLCYVGMTRAMEKLYILYAETRR 619


>gi|56461651|ref|YP_156932.1| DNA-dependent helicase II [Idiomarina loihiensis L2TR]
 gi|56180661|gb|AAV83383.1| Superfamily I DNA helicase, UvrD [Idiomarina loihiensis L2TR]
          Length = 723

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 117/690 (16%), Positives = 227/690 (32%), Gaps = 131/690 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   Q S  +             +  + + L  +S        
Sbjct: 30  GAGSGKTRVLVHRIAWLIQERQYSPFSILAVTFTNKAAAEMRGRVEQLVGSSVRGMWIGT 89

Query: 66  FSLLS---------SFFLTQKFTPQKNIITQEINKKS------PDLKEKLKKSQDEFIKI 110
           F  L+            L Q F    +   Q + K+        D +   K++Q      
Sbjct: 90  FHGLAHRLLRAHYMDVGLPQNFQIIDSDDQQRLIKRLIKSLNLDDKRWPAKQAQWYINGK 149

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D     +  ++   +    K +   Y+E+  +  ++DF +L++  ++LL+   +   +R
Sbjct: 150 KDEGLRPQHIETYDPTEQTLKEIYTLYQESCDRAGLVDFAELLLRAHELLRNNRI---VR 206

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  IR L            S  ++  VGD+ QSIY + 
Sbjct: 207 EHYQNRFRHILVDEFQDTNSIQYAWIRLLAG----------SQNSVTIVGDDDQSIYGWR 256

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+ + + +     +            I L  ++RST+ IL   + V S      G    
Sbjct: 257 GAKVENIHQFLSDFE--------GSETIRLEQNYRSTSTILRAANSVISNNSGRLGK--- 305

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW           + +  S  + F+ + +       AR I 
Sbjct: 306 ------------------DLW-------TDGNDGEPISLYAGFNEMDE-------ARYIV 333

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                    +D  +L R    + ++           ++        
Sbjct: 334 ARIEEWRDQGGSL----------QDSAILYRSNAQSRILEEAL----LHARVPYRIYGGL 379

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              D   IKD +A  R + +++DD +   ++ +P        +  I    R   E++++ 
Sbjct: 380 RFFDRQEIKDALAYLRILGNRDDDAAIERVINTPTRGIGNRTMDMIRQAAREREESLWQA 439

Query: 470 ------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                  ++ A    +     + +I  L    +  S       ++        + +  G 
Sbjct: 440 AKYMVNEKQLAGRARNAVGSFLDFIENLDDETEEFSLGRLSDEVIKKSGLMAMYEAEKGE 499

Query: 524 EVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           +     + L E +         +    +  L + L        +       + V++MT+H
Sbjct: 500 KAETRVENLKELVTACENFTLDDDEEDMTPLNAFLAHASLEAGEEQADEYQDAVQLMTLH 559

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P+VF+      +F  +                                     
Sbjct: 560 SAKGLEFPLVFMTGVEEGLFPSQQSMDEPG------------------------------ 589

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                 EE  RL YVGMTRA ++L++    
Sbjct: 590 ----RLEEERRLCYVGMTRAMEKLVLTYAE 615


>gi|297184355|gb|ADI20471.1| superfamily I DNA and RNA helicases [uncultured alpha
           proteobacterium EB080_L58F04]
          Length = 781

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 120/743 (16%), Positives = 219/743 (29%), Gaps = 134/743 (18%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS- 103
           + A+ L+Q+ +       F  +    L +       + +    + + +   LK+ L  S 
Sbjct: 94  RVAELLRQSVEGMPWMGTFHSICVKLLRRHAELVGLKSSFTILDTDDQIRLLKQLLVASD 153

Query: 104 -------QDEFIKIRDRFNTYKMFKSTLASLTL------AKYLNAHYEEAKKKNCVLDFE 150
                    +   I D++         + +         A    A Y+E  K    +DF 
Sbjct: 154 VDDKRWPARQLAGIIDQWKNRAWGPENVPAAEAGAFNHRATEFYAAYQERLKALNAVDFG 213

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL+++   + + +     +  +  Q   +IL+DE QDT++ Q+  +R L           
Sbjct: 214 DLLLHVVKIFQTQPD---VLQQYQQWFKYILVDEYQDTNVAQYLWLRLLAG--------- 261

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              + +  VGD+ QSIY + GAE   +L+ ++               + L  ++RST  I
Sbjct: 262 -GHKNICCVGDDDQSIYGWRGAEVGNILKFEKDF--------AGAKTVRLEQNYRSTPHI 312

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           L     V S      G                      +LW       + +       W 
Sbjct: 313 LAAASAVISGNTGRLGK---------------------ELW---TDLDEGEKLRLIGHWD 348

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           +              AR I   I  +                   + +LVR         
Sbjct: 349 A-----------EEEARWIGDEIEALQQGSRGLDK-----FSPDQMAILVRASHQMRAFE 392

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                      +           + + ++D MA  R + S  DDL+F  ++ +P     +
Sbjct: 393 DRF----LTIGLPYRVIGGPRFYERMEVRDAMAYFRLVCSPSDDLAFERIVNTPKRGLGD 448

Query: 451 DDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVIKYIHELI--HIAQFCSPH 501
               KI +          E   +    +  +  G  +   ++  +         Q  S  
Sbjct: 449 KAQQKIQSMARQEGIALTEGARLLLEAKGLSGKGALELGRLVDGLGRWRKTMQDQSISHQ 508

Query: 502 DFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
           +   +IL      + + +    E     + L E +    + E         L   LE   
Sbjct: 509 ELAEVILDESGYTEMWQNDKTPEAAGRLENLKELVKALDQFEN--------LQGFLEHVS 560

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
             +         +V IMT+H AKGLE P VFL      +F  +                 
Sbjct: 561 LVMDNERDEAGEKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRS--------------- 605

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                            +    +   EE  RL YVG+TRA     IC   N     +   
Sbjct: 606 -----------------MDETGQRGLEEERRLAYVGITRAERLCTICFAGNRRIFGQWQS 648

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                 + +   +   V                        EN          + +  Q 
Sbjct: 649 SMPSRFIDELPADHVDVLTPPGLYGGAYGMQSEASNLAVDIENIGGGYASPGWKRLQSQS 708

Query: 739 IPKKLFSPIKNDINEPYILNPST 761
             + +  P ++       +  S+
Sbjct: 709 AERPISQPRESAHMTIDAVAVSS 731


>gi|319788731|ref|YP_004090046.1| UvrD/REP helicase [Ruminococcus albus 7]
 gi|315450598|gb|ADU24160.1| UvrD/REP helicase [Ruminococcus albus 7]
          Length = 1231

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 139/918 (15%), Positives = 276/918 (30%), Gaps = 138/918 (15%)

Query: 113  RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
            R N   + K  +A   L K +     + K +   +DF D+ + T +LL +     + R +
Sbjct: 336  RDNLVLVQKLFMAVCRLEKRVEEVSYDIKLEKNAVDFGDIELMTKNLLVRETDDGFERTE 395

Query: 173  IDQEIN------HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
            + +EI        I+IDE QD + IQ  + +++++      +        F VGD KQ+I
Sbjct: 396  LAEEIRSGGAYKLIVIDEYQDVNDIQEMIFKAVSD----TDDLTVMGSNTFIVGDMKQAI 451

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ- 285
            Y F    P+       + Q+      +K   I L  +FRS  +++ + + +F    ++  
Sbjct: 452  YGFRKTNPELFKNCIELAQRY--GEEKKLEHIGLQKNFRSRGEVIALSNFIFETLMSSGC 509

Query: 286  -GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
              +  D +  +   +    +    ++                       D+  ++S   +
Sbjct: 510  GQVDYDGSERLEAGAVYTDRSCPAEV--------------------MLVDAPDEKSGIPL 549

Query: 345  LARRIAYTISNMIGTDTIF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              R  A  I  MI +       G  R  +  D  +LV    +    T           + 
Sbjct: 550  EFRCTAKRIREMIDSGEPVCDGGVDRPCRQSDFCILVNTNDNIRQATDALSA----AGLR 605

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC------ 457
                D         I   + L R + +  +D+S   ++ SP+  F+ D++  I       
Sbjct: 606  AFCEDTEGYIKSREISLALDLLRCVDNPMNDISLTAVMMSPVMGFTPDEMVHIRLKCKAA 665

Query: 458  ----------------TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
                             ++   E   +Y+   ++    K +   + I  L + +   S  
Sbjct: 666  NPKKPDHIYQILAGASREKGTDEKYAKYVDMGSDVLQEKCRKAFEMIESLRYCSMSMSLE 725

Query: 502  DFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                 I  A              +    L   L +    E++    +   +  ++     
Sbjct: 726  KLIRRIFNAADLMALTSIYLDSAKKRANLRLLLQYAGDYERSGNEGVTGFLRYIDSVSGN 785

Query: 561  IK-----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
             K      + +A  + V + T H +KGLE P VF+      +      + + +  ++   
Sbjct: 786  DKAFRNAVSVTAGGDSVNVKTYHKSKGLEYPFVFMCTLSKPLVRDDTRELIKLHKTMGCA 845

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--IICKHSNTSNE 673
              +       K  +     L   + +  + E  RL YVG TRA ++L  ++         
Sbjct: 846  FVLKDRRLNVKRADLYYDHLSDMIVREHKSERMRLFYVGCTRAKEKLMFVLSNEKTGHVT 905

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKI----------------KLTNSINKDEWIAYEWSTH 717
            +        D V  S   D     I                KL      +EW+     T 
Sbjct: 906  RSRIMEKLRDAVKASAKYDRIPADIVSAQENVLTWTVMCLSKLKERSALEEWLGMPLDTV 965

Query: 718  HPENTPL------------------EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                                     E+ E   +   +  +  +L +      + P    P
Sbjct: 966  PVSENAEGISISYHVCSEDTDTEVSEQNEKTVRAAADPALVARLRNIYAASADRPETRLP 1025

Query: 760  STIDTKGK--------------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            + +                           L   L       RG   HK +++       
Sbjct: 1026 AKLTVTEIVAAEKAKDQGDKNTEFFPNLPRLNDELDKLSAAERGTYTHKFMELADYSKAR 1085

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-CDSYSEVSVSGKINCP 858
            +  +           +   +        +   + + +    MS  D   E      +   
Sbjct: 1086 ESVDAELDRLVSRGCMSEREAKGVYTDKLKIFVNSSLFDRMMSSDDLRREQKFLASVKDL 1145

Query: 859  K----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                           I G  D I        + +YKT +    +       +  QL +Y+
Sbjct: 1146 GLTEELSEYTTNKGYIQGIADCIFKEPDGWVLVDYKTDNFKSTDEMK---RYKTQLMLYK 1202

Query: 909  KILKDSYPNKSLVCLLIY 926
               +     + +    IY
Sbjct: 1203 AAFELLL-GERVKSSYIY 1219


>gi|257420982|ref|ZP_05597972.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98]
 gi|257162806|gb|EEU92766.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98]
          Length = 752

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 91  FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 150

Query: 111 RDRFNTY-KMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 151 KNELQTLEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 209 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 258 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 309 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 335 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 382 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 441

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 442 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 501

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 502 LESQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEES 559

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 560 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 594


>gi|120611309|ref|YP_970987.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120589773|gb|ABM33213.1| DNA helicase/exodeoxyribonuclease V, subunit A [Acidovorax citrulli
            AAC00-1]
          Length = 1168

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 143/959 (14%), Positives = 308/959 (32%), Gaps = 94/959 (9%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSM-ETGNPTILKKAQTL-QQASQTQCIEERFSLLSS 71
              +      L            + ++      T  K A  +      T  ++ER   L  
Sbjct: 243  AGLEHPAQALAAEDCRARWLAWAAALGSESAKTPQKAADAIVTAFCDTAGLQERLEALRG 302

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                 K       + +          ++ ++        R +   +   +       L +
Sbjct: 303  ALFVAKEDRLTRHLEK------FAAAQEAERELQALCLARRQHEAWLHQQR---MARLTR 353

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L A +   K+    +D  D+      +L    +S W++ ++D  + H+LIDE QDT+ +
Sbjct: 354  ALVAAFGALKRDRGWVDMNDVERTALVMLSDPVLSGWVQERLDARVRHLLIDEFQDTNPL 413

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW+ + +    +  G      P ++F VGD KQSIY F  AEP+     +          
Sbjct: 414  QWQALHAWLAGYV-GTGGGQHPPSVFIVGDPKQSIYRFRRAEPQVFRAAQ-----AFVRQ 467

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            G    ++    + R+  +++  V+ V    +     +        H +        ++L 
Sbjct: 468  GLGGDLLACDHTRRNAPEVIAAVNAVMGAAQAQGDYAGFRD----HTTESRDAGVLLRLP 523

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +  + +             +                 +          ++     +
Sbjct: 524  PIEDTADEDENGDGAPDARPDPLAWRDSLVQPRHEAEETLRMRECQQAARWVADRIAAGV 583

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             A+ I+VL RKR     +    R L     +  V  ++  L +   ++D++AL   ++S 
Sbjct: 584  PARQIMVLARKRDRLSALQDALRDL----HLPCVQPEKVELCEAPEVQDVVALLDVLVSP 639

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------------ 479
              DLS    L+SPLF   +  + ++   R E E       +                   
Sbjct: 640  GHDLSLARALRSPLFGVDDALLVRVAVARREAERGAARGPQEGGAPGWMELLADRALLDA 699

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNF 535
            +   +   +    H  +   PHD    I   +    ++ +         V+  L   L+ 
Sbjct: 700  EMPGLSHDLRLYRHWVEQWPPHDALDAIYRHRDVLARYAAASPAPLRAGVLANLRALLSA 759

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             L+ +   Y +    +  L++          A  + VR++T+H AKGLE+  V L+DT  
Sbjct: 760  ALQQDGGRYLTPYAFVRALKRPGQRAPGRVDA--DAVRLLTIHGAKGLEADAVLLLDTDG 817

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +    + +  +   P     P   +++    S     +D +   +   Q E    LYV M
Sbjct: 818  RAQKAETMGVLVDWPGELPAPRRFVFLASEASPPPSAADALAAEQAERQREEINTLYVAM 877

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA   L +     + +   S       +  D   +                        
Sbjct: 878  TRARHCLALSCVRASQSAPGSWWNRVAPLAADVPQDLSGPMGGAEDGLG----------- 926

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                            QL +       +  P+                       E    
Sbjct: 927  -----------AAVDAQLPELPGWQDAVPLPMGLPPVAEAGAGAQAEAAVAGLPRERRAP 975

Query: 776  DNQTFNRGLIIHKLLQV------IFTLPEHKRKNFITSYCTKNAKL--WPAKEYKNLLLS 827
                  +G  +H+LL+       +          +  +   + A+    PA+  ++  + 
Sbjct: 976  STPVSRQGEAMHQLLEQAGLAGTLPGGAAGGSAGWPRARLQQLARDFELPAELAEHAAVM 1035

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG---RIDQISI--SQQ--NIFI 880
              R+L+           +++  S   ++   +  I+  G   RID++    +      ++
Sbjct: 1036 AARILQ--------GEGAWAWSSAEIELAMDEAPIVHRGQTLRIDRLVRRSTDGGAEWWV 1087

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
             +YK+  +  ++ E +      Q+  Y + ++  +P + +    +   + ++  +  + 
Sbjct: 1088 LDYKSAANPERQAELV-----EQMRRYRQAVQGQFPGEPVRAAFL-TGDGRMVEVDSSA 1140


>gi|307250580|ref|ZP_07532522.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306857396|gb|EFM89510.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 699

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 112/551 (20%), Positives = 192/551 (34%), Gaps = 121/551 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L + +     I  +  Q    ILIDE QDT+ I
Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L  +             +  VGD+ QSIY + GA+ + + R     QK     
Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ S  E+  G +                     LW
Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    Q +         F+ L +       AR +A  I      +           
Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  I    R+   T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ I+ L    +     +    ++      + +    G +    I+ L+E +  T +   
Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    S L   ++             S + + V +MT+H+AKGLE P VF+V     +
Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          +   +E  RL YVG+TR
Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608

Query: 658 ASDQLIICKHS 668
           A  +L I    
Sbjct: 609 AKKKLTISYAE 619


>gi|260220810|emb|CBA28747.1| DNA helicase II [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 872

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 101/586 (17%), Positives = 189/586 (32%), Gaps = 143/586 (24%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+  ++  V+DF +L++ + +LL+     A IR    +   HILIDE QDT+ +
Sbjct: 235 EIYQLYEDQCQREGVVDFGELMLRSFELLRDN---APIREHYQRRFRHILIDEFQDTNKL 291

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  I+ +      G +      ++ AVGD+ QSIY+F GA    +    R    R    
Sbjct: 292 QYAWIKMIAGVGQGGSDA--GAGSVLAVGDDDQSIYAFRGARVGNMTDFVREFAVR---- 345

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  ++RS ++IL   + + S      G +                       
Sbjct: 346 ----QQIKLEQNYRSYSNILDSANALISHNSRRLGKNL---------------------- 379

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                + D         + +  D           A+ +   +  +I  D          +
Sbjct: 380 -----RTDQGAGEPVRVYEAPSDFAE--------AQWMVDEMKQLIRDD----------V 416

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VL R    + +I         +  I           +   IK  +A  R + + 
Sbjct: 417 PRSEIAVLYRSNAQSRVIETGL----FNAGIPYRVYGGLRFFERAEIKHALAYLRLLENP 472

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD SF+ ++  P        I ++    R    ++++ +        +     +  +  
Sbjct: 473 NDDTSFLRVVNFPARGIGARSIEQLQDLARATGCSLHDAVSTLTGRPGAVIAGFVAKLDV 532

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN---------- 539
           +       +  D   L+L      + + + R G + ++ LDE +N               
Sbjct: 533 MREQTADLNLKDIIKLMLEHSGLLEHYRNEREGEDRVENLDELVNAAESFVMQEGFGREA 592

Query: 540 ----------------------------------EQNSYSSLQELISELEQYPPTIKRAH 565
                                               ++  +L  L + L           
Sbjct: 593 PGMAPLVSSPEALLSQSPASQGLSGEALETAPDEFGDTGETLSPLQAFLTHAALEAGDNM 652

Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            +A  + +++MTVH++KGLE   VF+      +F H++                      
Sbjct: 653 AAAGQDAIQLMTVHSSKGLEFDCVFITGMEEGLFPHENS--------------------- 691

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                               EE  RL YV +TRA  +L +      
Sbjct: 692 -------------MSDHDGLEEERRLAYVAITRARKRLYLSHSQTR 724


>gi|51473636|ref|YP_067393.1| DNA helicase II [Rickettsia typhi str. Wilmington]
 gi|81390099|sp|Q68WT1|UVRD_RICTY RecName: Full=DNA helicase II
 gi|51459948|gb|AAU03911.1| DNA helicase II [Rickettsia typhi str. Wilmington]
          Length = 658

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 112/567 (19%), Positives = 185/567 (32%), Gaps = 121/567 (21%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                + L    +AK +   Y++    + VLDF DL++  N+L  K      I     ++
Sbjct: 164 LSASDTNLPLQRVAKLIYEEYQKNLLISNVLDFGDLLLYNNELFIKNPE---ILKYYQEK 220

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +ILIDE QDT++ Q+   R L   +          R +  VGD+ QSIY + GAE   
Sbjct: 221 YRYILIDEYQDTNIAQYLWARMLASLY----------RNICCVGDDDQSIYGWRGAEVGN 270

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +LR ++             +II+L  ++RST  IL     V +  +N    +        
Sbjct: 271 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHSKT-------- 314

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW       DS    + +  +   D           AR IA  I  +
Sbjct: 315 -------------LW------TDSASGEKIKIISCLSDKEE--------ARYIACEIDKL 347

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +  +            A +I +LVR    T            +  +           + +
Sbjct: 348 VREER---------YHAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 394

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475
            I+D++A  R  L+Q D+L+   ++  P        + KI         + +  I++   
Sbjct: 395 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRSYALERNISNFVAIKEILE 454

Query: 476 ------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
                       + ++  I          +P +    IL               E    I
Sbjct: 455 TGIFKAKSYESLKDLLTKIDNWYEKFITDTPINVVKTILDDSGYLSMLQEEKTEEAFGRI 514

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584
           + ++E L               ++   +E     ++           V IMT+H AKGLE
Sbjct: 515 ENINEMLRAIAEF--------NDIHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 566

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVFL      VF  +                                       +   
Sbjct: 567 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGEKGL 594

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671
           EE  R+ YVG+TRA   L I    +  
Sbjct: 595 EEERRIAYVGITRAKKDLYITHAESRK 621


>gi|90415966|ref|ZP_01223899.1| UvrD/REP helicase family protein [marine gamma proteobacterium
            HTCC2207]
 gi|90332340|gb|EAS47537.1| UvrD/REP helicase family protein [marine gamma proteobacterium
            HTCC2207]
          Length = 1147

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 159/987 (16%), Positives = 308/987 (31%), Gaps = 121/987 (12%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ++   + + L P+    ++ I+  V       N  + +     +          ++ L+ 
Sbjct: 223  DNLLELDEALQPVAGEFIALIDFAVQHIAPKDNLALSQLGSFSELPEIGLEGVAQWKLIL 282

Query: 71   SFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIK-------------IRDRFNT 116
               +T+   P+K I  +        ++K ++    D   +             + D    
Sbjct: 283  GLLVTKSNEPRKTINVKQGFPSDQKEIKARIIVLLDWCRERPELNEIIANVMHLPDAEID 342

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKI 173
                K   A   L   L A  +   ++    D+  + +   + L+      V + I  ++
Sbjct: 343  QSQQKMLDALGFLLPLLAAQLDVIFQQQGQCDYPAITLAALNALEPEAGDGVVSDITLRL 402

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            D ++ HIL+DE QDTS  Q +++  L   +          RTLF VGD  QS+Y F  A 
Sbjct: 403  DYQLRHILVDEFQDTSAAQIKLLEQLIGGW-----QPDDGRTLFLVGDAMQSLYGFRNAN 457

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                L  +R           +   + L  +FRS   I+  V+  F+              
Sbjct: 458  VGLFLNAQRH-----PVGPVQCRPLTLSSNFRSQLGIIEWVNSAFTDA------------ 500

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                 +      G +     V  +            +  F     ++     A  IA   
Sbjct: 501  ---FPAHADISRGAIPYSPSVAVKAADNAQ------SVSFQGFSGDNHKLDEAAYIAKLC 551

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            S++       S           I +LVR R     I    R  K          D   L 
Sbjct: 552  SDLRDHKPDES-----------IAILVRGRGHLRSIIPALREAKLF----WQAIDITPLA 596

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----- 468
              + + DL++L R +LS  D ++++ +L++P    S  D+  +     + +         
Sbjct: 597  SRMPVIDLLSLTRALLSPADKIAWLAVLRAPFCGLSLGDLLAVANSLGDNKENPHKPNNA 656

Query: 469  ----------------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                            ++   +  G    Q ++  +          +       +     
Sbjct: 657  VLAQLIELLGVSASQLHLSHLSQDGQQCLQRIVPLLESAWANRGRTNLRASVEQLWIDLG 716

Query: 513  GRQQFISRFG-NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ----YPPTIKRAHSA 567
            G          ++    LD   N+      + ++S +  + +L                +
Sbjct: 717  GPATLKDSADLSDARSYLDLLENWQTGATVSDWNSFKLAVDKLYAAPSPDDGGSDNTDGS 776

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---Q 624
              + ++IMT+H AKGLE   V L        S K                  I  P    
Sbjct: 777  QKSVIQIMTIHKAKGLEFDHVILPGLSRGSGSDKKQLMRWQQHIDEHSDSSLIMAPLGAH 836

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
             +  +++ S L +     T+ E  R+LYV  TRA  +L +C         +        +
Sbjct: 837  DEEDDSVYSYLKREDSLKTRLESTRVLYVAATRAVRRLYLCGAVKQLKNGQWQPTGKTTL 896

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +   + + E      L         +A + S   P    + R +   Q          L 
Sbjct: 897  LTPIWKSIETGLDQGLYAVQQSATELADKDSKEVPSLRHIRRLDGQFQSPQRPDTSANLG 956

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL--------QVIFTL 796
            +P      E      S ID+            ++  + G ++H+ L        +     
Sbjct: 957  TP------ETSAETGSDIDSSL---------SSRARSMGTVLHRTLKQLANEGVEQWPES 1001

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
               +      +   +   L    E K+LL ++  +L +      +     ++   +    
Sbjct: 1002 RISQLPATWGAQLKELGMLARPDELKSLLDAVNSMLADQRGRWILQHHEQAQCEQALGYR 1061

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE-----HIPYTHIAQLSIYEKIL 911
               +  + +  ID+  +     +I +YK       E E          + AQLS Y K+ 
Sbjct: 1062 YSDRGHVGTSVIDRTFVENGTRWIIDYKLSQPAEGESETQFIVRQSSAYSAQLSHYAKLY 1121

Query: 912  KDSYPNKSLVCLLIYVSEPKVFIIPQN 938
            +    N  + C L +   P    +   
Sbjct: 1122 RSMQAN-PVHCALYFPQIPMFIELEAE 1147


>gi|54294730|ref|YP_127145.1| DNA-dependent helicase II [Legionella pneumophila str. Lens]
 gi|53754562|emb|CAH16046.1| DNA helicase II [Legionella pneumophila str. Lens]
          Length = 721

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 111/604 (18%), Positives = 198/604 (32%), Gaps = 121/604 (20%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +R +      +  T   ++    +   YE+  + + V+DF +L++ T++LL+  +   
Sbjct: 152 EGLRPQHINALHYGPTKTLVS----IYKAYEDVCQTSGVIDFAELLLRTHELLRDNEE-- 205

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I     +    IL+DE QDT+ IQ+  IR L  D             + AVGD+ QSIY
Sbjct: 206 -ILAHYRERFQAILVDEFQDTNTIQYAWIRLLAGDHTA----------VLAVGDDDQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + + +             +   II L  ++RSTA IL   + +        G 
Sbjct: 255 GWRGAKVENIQQFVHDF--------KDTQIIRLEQNYRSTAMILNAANALIHNNSTRMGK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                +LW        +    ++    S F+ L +       AR
Sbjct: 307 ---------------------ELW-------TAGSEGEKILVYSAFNELDE-------AR 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I   +               A +I VL R    + ++            I+    
Sbjct: 332 FVTERIGMELNQG----------ASADEIAVLYRSNAQSRVLEEAL----LRAGIAYRIY 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                 D   IKD +A  R +++  DD +F  ++  P     E  + ++    R E  ++
Sbjct: 378 GGVRFFDRAEIKDTLAYLRLLVNPNDDTAFERVVNFPTRGIGEKTLDEVRQYARAEQCSL 437

Query: 467 YEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QF 517
           +   +           G       I  I +L  +       +  + ++          + 
Sbjct: 438 WGASKGILQSTGLGQRGSLALAKFIDLIEKLQIVVANKELDEQISDVIQHSGLYAHFSKI 497

Query: 518 ISRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRI 574
                   +D L E +N   +   E +    L  + S L              +   V +
Sbjct: 498 KGDKSESRVDNLQELINAAKQFRYEYDEEEELPLVNSFLAHASLESGELQADEHERSVHL 557

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE P+VFLV     +F  +                                 
Sbjct: 558 MTLHAAKGLEFPIVFLVGMEEGIFPGRQS------------------------------- 586

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                +    EE  RL YVGMTRA  +L++          +         + +       
Sbjct: 587 ---IEEPGRLEEERRLCYVGMTRAMRKLVLSYAEVRRQYGREEYHRSSRFLREIPQQFLD 643

Query: 695 VKKI 698
             ++
Sbjct: 644 EVRV 647


>gi|189218845|ref|YP_001939486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Methylacidiphilum
            infernorum V4]
 gi|189185703|gb|ACD82888.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Methylacidiphilum
            infernorum V4]
          Length = 1055

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 160/943 (16%), Positives = 320/943 (33%), Gaps = 109/943 (11%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ--------ASQTQCIEERFSLLS 70
            D W  P        K   L+ E G  T+L++ ++L +          + +     F  L 
Sbjct: 196  DFWGEPG----SFQKEEELTKEAGFLTLLERIESLLKTAGIPTKTWEEQKLKISSFPRLY 251

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
               L              + +K  DL E+L  S     +    F   K  + T A   L 
Sbjct: 252  RNLLEAYDPQTGRCPQIRLERKRYDLNEELASSLGMLAQKTIDFFIEKSHRRTKAVAQLL 311

Query: 131  KYLNAHYEEAKKKNCVLDFEDL---IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             + +  Y +  ++  +  FED+   I+   DL    +      YK+D++ +H+LIDE QD
Sbjct: 312  SFYDLLYRKTVERQAICSFEDIPRIILQAVDL----NCPQPFLYKLDRKWDHLLIDEFQD 367

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            TSL+QW+VI+   ++    ++     R+ F VGD KQSIY + GA    +   +   +  
Sbjct: 368  TSLLQWKVIKLFVDEIIQHED---GSRSFFCVGDPKQSIYGWRGAYSGLIDSLEVEYR-- 422

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                       +L  S RS+  +L +V+++    E    L  +S    + R         
Sbjct: 423  -------MEKRQLSGSRRSSKAVLELVNRLLGNFEKIGKLLPESLERWKKRWVYQEA--R 473

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             +  E        Q    +    S  +    E   +  +      I  ++  +       
Sbjct: 474  DEELEGYGCFLCVQLPQGEAKGDSPEEGNNGEEKETGGSLLRYEAIKKLLVDEIKPHQ-- 531

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGR 426
                +A    VLV+  K+      + ++L     + V    +     D+L  K   AL +
Sbjct: 532  ----RALSCAVLVQTNKEA---EAIFQYLSLCSALRVSLEGKIYPGKDNLMAKLFFALVQ 584

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +    D L+   +  SP+ +                    +   +     +        
Sbjct: 585  SLAHPADSLALGWLQASPIGSI-----------------FKDEQWRKEFWRVFSLAGFEA 627

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                 +   +  SP + F                      + ++  L      +      
Sbjct: 628  LAFRFLAALKENSPGEDFQ--------------------NERMEMILQICRSFDNTGSRD 667

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS-HKHIKK 605
              + ++  + Y        S + + V++ TVH+AKGLE  VV + +      +    +++
Sbjct: 668  CDQFLNYYKNYSL----PLSEDPSSVQVRTVHSAKGLEFDVVLVTELAGSRNTAMNQLRE 723

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSD--LIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            + +    +       ++P+ +    +     L K L    + E   LLYV MTRA   L 
Sbjct: 724  LPVAYKSSSRDWKLFFLPRREVAEKVPRLSCLYKELLAEEELEKLSLLYVAMTRARQGLY 783

Query: 664  ICKHSNTSNEKKSNQR---TWYDMVYDSFHNDERVKKIKLTN-SINKDEWIAYEWSTHHP 719
            +         K S Q+    W D++++     E   +    +  +           T  P
Sbjct: 784  LLGEVREKKSKPSTQKKLVYWQDLLFEVLGRGEDTSRWFFPDFPLLTVFETGKRRWTPRP 843

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
             N    RE+        + +  +        ++    ++PS++  +            + 
Sbjct: 844  RNELFRREK-------YKAMESQDLLFPPRALSRTSFVSPSSVGVQAAELDLFSRVKEKG 896

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
             + GL++HK+L  +    E  ++                 E KN    +   L++  +  
Sbjct: 897  LDYGLLVHKILAQVERFSEAIKEKLEKRALE----YAKGDEEKNPFKEVLECLQSAAIKP 952

Query: 840  AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-----IFIFEYKTHHHVPQEIE 894
              S +  ++V +            + G  D++ I +         ++++KT        E
Sbjct: 953  IFSPEEGTKVWIERSFCVELDGRWLRGTFDRVHIKEDPTGELMCTLYDFKTDFVTEDRKE 1012

Query: 895  HIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFII 935
             +   +  QL  Y+K L      P   +   ++ +S  ++  +
Sbjct: 1013 ELAQKYRLQLEYYQKALCRLLGIPAWRVKVFIVSLSLKELIAL 1055


>gi|221134097|ref|ZP_03560402.1| DNA helicase II [Glaciecola sp. HTCC2999]
          Length = 722

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 110/722 (15%), Positives = 222/722 (30%), Gaps = 132/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    +S  +             +  + + L+  S        
Sbjct: 30  GAGSGKTRVLVHRIAWLMEVENLSPFSILAVTFTNKAAREMRGRIEQLKGQSLHHMWIGT 89

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI------------ 110
           F  L+   L     +    +N    + + +   +K  +K    +                
Sbjct: 90  FHGLAHRLLRAHYAEANLPENFTILDSDDQHRLIKRIIKSMNLDEKDWPAKQSQWYINGN 149

Query: 111 -RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +      +     A+    + +   Y++   ++ ++DF +L++   +L +  D    I
Sbjct: 150 KDEGLRPKDIDTYGDANQQKMRDIYQAYQQTCDRSGLIDFAELLLRAYELWRDND---RI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R    +    +L+DE QDT+ IQ+  +R L+               +  VGD+ QSIY +
Sbjct: 207 RQHYQERFRAVLVDEFQDTNNIQYAWLRLLSA----------PSNNMMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + +    +               I L  ++RST  IL   + V        G   
Sbjct: 257 RGANVENISHFLKDFP--------SADTIRLEQNYRSTGHILKAANAVIDNNAGRLGK-- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW           + ++    + F+ L +       AR I
Sbjct: 307 -------------------ELW-------TEDADGEKIKLYAGFNELDE-------ARFI 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I   +                 D  +L R    + ++            I       
Sbjct: 334 VARIKEWMDQGYAL----------SDCAILYRNNAQSRVLEEAL----LQEAIPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD +A  R I    DD +F  ++ +P     +  + +I    R   +++++
Sbjct: 380 QRFFERQEIKDALAYLRMINHPLDDAAFERVVNTPTRGMGDKTLSQIREVARETEQSMWQ 439

Query: 469 ------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                   ++      +  Q  +  I  + +  +          ++ A      + +  G
Sbjct: 440 TSVMMLQEKRLKGRAGNALQGFVDLIMNMSNDIKPLPLEQQTDHVIKASGLVAMYQAEKG 499

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +     + L+E +    + E       +  L + L        +     + + V++MT+
Sbjct: 500 EKAKARVENLEELVTACKQFEVPEEADDMTPLSAFLAHASLEAGEGQAEKHQDAVQMMTI 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           HTAKGLE  +VFL      +F                                       
Sbjct: 560 HTAKGLEFSLVFLAGVEEGMFPSAMTNDEPG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVGMTRA  +L I          +    T    + +         +
Sbjct: 591 -----RLEEERRLCYVGMTRAMQKLYITHAETRRVYGQDKFHTASRFIREIPKECIEEIR 645

Query: 698 IK 699
           ++
Sbjct: 646 LR 647


>gi|284040435|ref|YP_003390365.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
 gi|283819728|gb|ADB41566.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
          Length = 764

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/629 (16%), Positives = 200/629 (31%), Gaps = 113/629 (17%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y         +DF+DL+ NTN L +       I +K   +  H+++DE QDT++ Q
Sbjct: 177 IYKQYALRCFAANAMDFDDLLFNTNVLFRDH---LDILHKYQHKFQHVMVDEFQDTNVSQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + + R L              + +  VGD+ QSIY+F GA  + +L  +R   K      
Sbjct: 234 YLITRKLAA----------VHQNICIVGDDAQSIYAFRGANIENILNFQRDYGK------ 277

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           +   I++L  ++RST  I+   + + S  +N    S  +                + L +
Sbjct: 278 ENVKIVKLEQNYRSTKTIVEAANSIISRNKNQLEKSVFTAN---------EDGPLIDLIK 328

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                 +                           R +A +I         F       + 
Sbjct: 329 ASSDNEEG--------------------------RLVASSI---------FEAKMNESLT 353

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    +       R       I               IKDL+   RF ++Q+
Sbjct: 354 NNDFAILYRTNAQSRAFEEALR----KVSIKYRIIGGLSFYQRKEIKDLIGYLRFTVNQQ 409

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK----FQHVIKY 487
           D+ +F  ++  P     +  + KI      + E+++E +         +     +     
Sbjct: 410 DEEAFKRIINLPKRGIGDTTVAKISVIAAEKQESIWEIVANIGQHVAGRSAIPIEGFANL 469

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQ 541
           I     +       +  + I       ++       E     + + E LN          
Sbjct: 470 IKSYKLLLDQKDAFEVASHIAKTSGLLKELYDDKTVEGLARYENVQELLNAIKEFVDNPD 529

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           N   SL   +  +       ++    ++++V +MT+H AKGLE   V +V     +F  +
Sbjct: 530 NEEKSLSAFLQSVSLLTTADEKEDDGDNDKVTLMTIHAAKGLEFKNVHIVGLEEDLFPSQ 589

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            +                                     +S  EE  RL YV +TRA  +
Sbjct: 590 MML----------------------------------ESRSDLEEERRLFYVAITRAEKR 615

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST-HHPE 720
           L +       +  +         + +      ++ K++   S    +    + S      
Sbjct: 616 LTVSYAETRYHYGRLKMCEPSRFLMEIDQKYMKMSKLRSAPSRTDFDRPERDRSESTSTG 675

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKN 749
           +    R    K    +   P    +P  +
Sbjct: 676 SMSFVRSLAQKTARSQAPQPTVSHTPSAD 704


>gi|21673182|ref|NP_661247.1| DNA helicase II [Chlorobium tepidum TLS]
 gi|21646262|gb|AAM71589.1| DNA helicase II [Chlorobium tepidum TLS]
          Length = 759

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/635 (16%), Positives = 202/635 (31%), Gaps = 118/635 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y    ++N  LDF+DL+I   +L  ++     +  ++     ++LIDE QDT+ +Q
Sbjct: 184 VYERYVHKLRENNALDFDDLLIKPIELFTEQP---RVLEQLQDYFKYLLIDEYQDTNRVQ 240

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + V + + E            R +F VGD+ QSIYS+ GA+   +L              
Sbjct: 241 YLVAKMIAE----------KHRNIFVVGDDAQSIYSWRGADISNILNFNDDY-------- 282

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               + +L  ++RST  IL   + V S   +       +   +                 
Sbjct: 283 GDAQVFKLVDNYRSTKTILDAANSVISRNTHQIKKELVANAGM----------------- 325

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +  +    F+   +       A ++A  I ++            +  Q
Sbjct: 326 -----------GEPITLIEAFNEKRE-------AEKVAEHIKSI---------RLSKGAQ 358

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +   V  R    + +I  + R      +I               IKD +A  R +L+  
Sbjct: 359 YRSFAVFYRTNAQSRVIEDMMR----QNRIPYKIFGSVSFYKRKEIKDAVAYMRLVLNDR 414

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKFQHVIK 486
           D  S + ++  P     +  I K+         ++YE +++     F    ++       
Sbjct: 415 DSESLLRVINFPPRKIGDVSINKLKEFAEERNISLYEAVKRAGEGGFQARLVNALTQFTD 474

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNS 543
            I  +   A+  + +D  +++                E     + L E L+ T     ++
Sbjct: 475 LIEAMRKQAEEGTAYDVLSMLYETTGLLSLLKEENTPEALARHENLQELLSMTRDFADHN 534

Query: 544 YSS--LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            +S  L + +S +             + N V +MTVH AKGLE PVVF+     ++F   
Sbjct: 535 PNSATLGDFLSTISLASD--YDETQESDNYVSLMTVHAAKGLEFPVVFVTGMEEKLFPLN 592

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                 +    EE  RL YV +TRA ++
Sbjct: 593 S------------------------------------YEPGELEEERRLFYVAITRAREK 616

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +    +     +         + +   N    +  +  +   K              +
Sbjct: 617 LFLSWAQSRYMYGQPQMCMRSTFINEINPNIIVTEGGRKLSESPKKVAATAMAGRPVFGS 676

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
           +   +             P     P     +E   
Sbjct: 677 SLRPQPGGSPAAKVPTVKPAGSARPTGAAKSEYRP 711


>gi|261493261|ref|ZP_05989788.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311111|gb|EEY12287.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 734

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 111/580 (19%), Positives = 204/580 (35%), Gaps = 117/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L K +     I  +  Q    ILIDE QDT+ I
Sbjct: 178 EIYQIYQDACDRAGLLDFAELLIRAYELFKTKPT---ILQRYQQRFQQILIDEFQDTNNI 234

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L  D             +  VGD+ QSIY + GA+ + + R            
Sbjct: 235 QYDLIRLLAGDV----------GKVMIVGDDDQSIYGWRGAQVENIQRFLNDYDN----- 279

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL+  +++ +  +N  G +                     LW
Sbjct: 280 ---AQTIRLEQNYRSTGNILSCANELIANNDNRLGKN---------------------LW 315

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +       F+ L +       AR +A  I      +           
Sbjct: 316 -------TDSGDGEPVDIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 353

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 354 --AECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 407

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     +  +  +    R    T+++ IQ      + +    S     
Sbjct: 408 QDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQEEQLSGRATSSLLRF 467

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ I+ L    +  S  +    ++      + +    G +    I+ L+E +  T +  +
Sbjct: 468 VELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFVK 527

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +    L +L + L        +   S + + V +MT+H+AKGLE P VF+V     +F 
Sbjct: 528 PDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSAKGLEFPRVFIVGVEEGIFP 587

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                    +   +E  RL YVG+TRA 
Sbjct: 588 SGMSFD-----------------------------------EGRLQEERRLAYVGITRAK 612

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +L I    +     K  +      + +      R  +++
Sbjct: 613 KKLTISYAESRRLYGKEERHVPSRFIAELPEEHIREVRLR 652


>gi|260775103|ref|ZP_05884002.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609020|gb|EEX35180.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 723

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/549 (17%), Positives = 183/549 (33%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+      ++R        HIL+DE QDT+ I
Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +  R         
Sbjct: 229 QYAWLRMMAG----------PESHVMIVGDDDQSIYGWRGAKIENIEKFTREFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I                  
Sbjct: 310 -------TDGVEGEPISVYSAYNELDE-------ARFAVNKIKEWQEKGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R + ++
Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMANR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T+++      +               
Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWQASVALLDEQVLAGRAAGALSRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ +  L       S H+    ++        +    G +    I+ L+E +  T + E+
Sbjct: 462 VELVSALEDDTCEMSLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 522 PEEAEEMTLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHS 668
           ++L I    
Sbjct: 608 EKLYITYAE 616


>gi|281420327|ref|ZP_06251326.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205]
 gi|281405629|gb|EFB36309.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205]
          Length = 836

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 124/729 (17%), Positives = 224/729 (30%), Gaps = 140/729 (19%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--RDRFNTYKM 119
            E     L    + +     K      ++ K    K  L  +          ++    +M
Sbjct: 112 DESDSRSLIKAIVKEMGLDDKKYKPAAVHAKISMAKNNLMSAAAYESDATIFEQNKRAQM 171

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            +           +   Y +  K+   +DF+DL++ T  L ++ +    IR+K     ++
Sbjct: 172 PE--------VGKIFVAYVQRCKQANAMDFDDLLMLTYQLFREHED---IRHKYAARFDY 220

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++  L ++           + + AVGD+ QSIYSF GA    +L 
Sbjct: 221 VLVDEYQDTNHVQMSIVMQLCQE----------KQRVCAVGDDSQSIYSFRGANIDNILN 270

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +R  Q           + +L  ++RST  I+   + +     N           I    
Sbjct: 271 FQRQFQ--------GTRLFKLEQNYRSTQTIVEAANSLIKHNRNQ----------IPKDV 312

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                 G    ++   S  +                          A  +A  +  +   
Sbjct: 313 FSENAKGEKIQYKPAYSDKE-------------------------EAAIVAKDVKRIRRE 347

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
           D           Q  D  +L R    +       R       I               IK
Sbjct: 348 D---------GCQYSDFAILYRTNSQSRSFEEEFR----KQGIPYRIYGGLSFYQRKEIK 394

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC-- 476
           D++A  R + +  D+ +   ++  P        + KI         + +E I        
Sbjct: 395 DIIAYFRLVANPNDEEAIKRIINYPARGIGATTVLKIADCAHQNQVSFWEVIGAPERYGL 454

Query: 477 -----GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDV 528
                 ++K +     I   I  AQ    ++    I+      Q  +S    +     + 
Sbjct: 455 AVNKGTMNKLETFRLLISSFIERAQTTDVYELGDAIIKESGISQDIMSGKDADDLARQEN 514

Query: 529 LDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIKRAHSANHN--EVRIMTVHTAK 581
           L+EFL+          E+  +  L  L   L+            + +   V +MTVH AK
Sbjct: 515 LEEFLSGMSAFVEERREEGKFDELF-LQDYLQDVALLTDADSDGDKDEPRVSLMTVHAAK 573

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE P VF+V     +F                                     +     
Sbjct: 574 GLEFPTVFVVGLEENIFPSP----------------------------------LSATSL 599

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              EE  RLLYV +TRA    I+    N     K         +             KL 
Sbjct: 600 RDLEEERRLLYVAITRAEKHCILTNAKNRWRYGKMEFDNPSRFI--------DEIDGKLI 651

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
           +S+++     +   +  PE    +R     +  ++ +   +  +             PS 
Sbjct: 652 DSLDEAGGSLFGSMSDQPEWARAQRPRRPWEDAEQPRYSSRYQNSKPVASQFVADPKPSL 711

Query: 762 IDTKGKTNL 770
            D + +T+ 
Sbjct: 712 FDDEPETSR 720


>gi|284033229|ref|YP_003383160.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283812522|gb|ADB34361.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 1079

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 142/986 (14%), Positives = 273/986 (27%), Gaps = 195/986 (19%)

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             L +  L+       +++  +      ++++  +  + E      +    K    T    
Sbjct: 182  TLVNSLLSLDGELADHLLRAD------EIRDHDEAVRQEVAAAPKQTVEVKKLAETALKR 235

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                 L   Y+  K +  V+DF D +     L ++      I          +L+DE QD
Sbjct: 236  GEILQLVEEYQAYKAERGVVDFADQMALGARLAEQCPEVPAI---ERSRYKVVLLDEYQD 292

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            TS+ Q    R LT  F      H     + AVGD  Q+IY + GA    +       +  
Sbjct: 293  TSVSQ---RRMLTALFAGPDPEHGRGHPVTAVGDPCQAIYGWRGASVANLDEFPEHFRN- 348

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                G       L ++ R  + IL   +      E+A  L E     I   +      G 
Sbjct: 349  --ADGTPARRYVLSVNRRCGSRILAAAN------EHATELYEQHPGVIPLEAPDGAPEGA 400

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            + +        +                             IA +I             K
Sbjct: 401  ITVGLFETRSQEI--------------------------EWIADSIVA---------AHK 425

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                + KDI +L+R   D   +       K    + V       L     + D++A  + 
Sbjct: 426  TPNRRWKDIGILMRTNVDLSAVHEALIARK----VPVEVVGLGGLLALPEVVDVVATLQA 481

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------------------------- 461
            +     + + + +L  P +     D+  +  +                            
Sbjct: 482  VNDLTANAAMLRILTGPRYRIGHRDLALLANRSRALADGGDRPAADDLVAALDAAVAGMD 541

Query: 462  --ETETVYEYIQK-------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
              E  ++ E +         ++   + +FQ +   + EL   A      D    ++    
Sbjct: 542  STEVISLAEAVDDPGPAGWGYSPEALERFQELSTELRELRAHAGE-PLLDLVRRVISTIG 600

Query: 513  GRQQFISRFGN---EVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPT---IKRAH 565
               +  +   +      D L  FL+            SL  L++ L         +  A 
Sbjct: 601  LDVELTATPDHVDSGRRDHLAAFLDAVGNFVSTESDGSLDGLLAYLAAEEEYAAGLDLAV 660

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK-------MHIMPSLNDDPGI 618
             +  + V+++T H +KGLE PVVF+    ++VF     +        +   P   D   +
Sbjct: 661  PSEADSVKLLTTHRSKGLEWPVVFVPTLVNKVFPSDRGRDKWTTNAKVLPWPLRGDADTL 720

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
            P +       N  +       K+    E  RL YV  TRA + LI   H     +K+   
Sbjct: 721  PDFH---DLSNAGLKAFSDECKQVNSLEERRLGYVAFTRAKEVLIATGHWWGPTQKRPRG 777

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER------------ 726
             + Y  +      D  +          ++  +A +     P     E             
Sbjct: 778  PSAYLEMLKKHAGDRVIAWAPQPELSEENPELAEQTQAAWPAPYDAEAYRRRLEGAALVQ 837

Query: 727  -----------------------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI- 762
                                        +L       ++  S    D+  P  L+ + + 
Sbjct: 838  QARAEGPSAEAEESLLLDEQATVARWDSELERLLSEARESRSRKAYDVELPRTLSATQVM 897

Query: 763  -------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
                       +         N+    G   H  ++  F                    L
Sbjct: 898  RLAKDPDGLATELARPMPRKPNRAARFGTRFHAWVESYFG----------------QQFL 941

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSC------DSYSEVSVSGKINCPKKDIIISGRID 869
                +          ++++  +T  M           +   +           ++ GRID
Sbjct: 942  LDPDDLPGAADE--GIVDDTDLTELMDAFRVGPYGEKAPYEIEAPFALSIGGRVVRGRID 999

Query: 870  QIS--ISQQ---NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVC 922
             +   +         + ++KT      +          QL+IY     +    P   +  
Sbjct: 1000 AVYQVVRPDGSRGYDVVDWKTSRSETADP--------LQLAIYRVAWAELLGIPLTQVGA 1051

Query: 923  LLIYVSEPKVFIIPQNKLNKAFAEIS 948
               YV    +         +    + 
Sbjct: 1052 AFYYVRTGDIVRPDNLPTKQELVTLL 1077


>gi|147669647|ref|YP_001214465.1| UvrD/REP helicase [Dehalococcoides sp. BAV1]
 gi|146270595|gb|ABQ17587.1| UvrD/REP helicase [Dehalococcoides sp. BAV1]
          Length = 738

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/551 (18%), Positives = 183/551 (33%), Gaps = 118/551 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   YE+  K+N  LDF+DL++    L K+      +     +   H+++DE QD
Sbjct: 167 EMVGRVYELYEKRLKQNKALDFDDLLLKVVQLFKQHPE---VLAGYQERYLHVMVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+L+Q+E+++ L+  +          R +  VGD  QSIYS+  A+ + V   +      
Sbjct: 224 TNLVQYELVKMLSAKY----------RNICVVGDPDQSIYSWRSADLRNVFNFETD---- 269

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST +IL     V +     + +S                   
Sbjct: 270 ----NPGAKVILLEQNYRSTKNILEAASCVIAPNSGRKPIS------------------- 306

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + Q  +    F+   +       A+ +   I  +           
Sbjct: 307 --LW-------TENESGQPIAVVETFNEQEE-------AQFVVSEIEKLTR--------- 341

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  +I +L R    +  +          Y +               +KD++A  R 
Sbjct: 342 YEKFSPGNIAILYRTNAQSRALEEAF----IRYGMPYRLVSGTRFYQRREVKDIVAYLRL 397

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480
           + + +D +S   ++  P        +  +    R +  ++Y+ +   ++    K      
Sbjct: 398 LQNPQDSVSLQRVINIPTRGIGAKTLSDLAQFAREQDISLYQSLINLSDENAPKPPIPSR 457

Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
                      +  LI  AQ     +    +L     R+    S  G E  D + E    
Sbjct: 458 GLKPLTDFGALLKSLIIDAQTLPLLNLLDRLLEGISYREFLFASEDGEERWDNILELRTV 517

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             + ++      + L + LE               + V ++T+H AKGLE PVVF+V   
Sbjct: 518 AQQYQEILPP--EGLSAFLESVALVSDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGME 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H                                         +  +E  RL YVG
Sbjct: 576 EGVLPHNRSFDDP----------------------------------AQMQEERRLCYVG 601

Query: 655 MTRASDQLIIC 665
           +TRA  +L + 
Sbjct: 602 VTRAKKRLYLV 612


>gi|32034174|ref|ZP_00134396.1| COG0210: Superfamily I DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208790|ref|YP_001054015.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae L20]
 gi|126097582|gb|ABN74410.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 732

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 112/551 (20%), Positives = 192/551 (34%), Gaps = 121/551 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L + +     I  +  Q    ILIDE QDT+ I
Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L  +             +  VGD+ QSIY + GA+ + + R     QK     
Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ S  E+  G +                     LW
Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    Q +         F+ L +       AR +A  I      +           
Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  I    R+   T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ I+ L    +     +    ++      + +    G +    I+ L+E +  T +   
Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    S L   ++             S + + V +MT+H+AKGLE P VF+V     +
Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGI 583

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          +   +E  RL YVG+TR
Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608

Query: 658 ASDQLIICKHS 668
           A  +L I    
Sbjct: 609 AKKKLTISYAE 619


>gi|189463105|ref|ZP_03011890.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136]
 gi|189430084|gb|EDU99068.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136]
          Length = 784

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 112/772 (14%), Positives = 227/772 (29%), Gaps = 135/772 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQV--SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  E  E I + +       +     +   S  + T        A             + 
Sbjct: 63  AAREMKERIARRVGAERARYLWMGTFHSIFSRILRT-----EAAAIGFSANFTIYDAADS 117

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            SL+ +    ++      +    + +      +      D +   R+ +   +      A
Sbjct: 118 KSLIKAII--KEMQLDDKVYKPGVVQSRISNAKNHLMLPDAYAASRELYENDQA-----A 170

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            +   + +   Y E  +++  +DF+DL++ T  L +          K      ++L+DE 
Sbjct: 171 KIPAVRDIYRRYWERCRQSDAMDFDDLLVYTYILFQTHPELCD---KYASRFRYVLVDEY 227

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q  ++  LTE +          R +  VGD+ QSIYSF GA    +L+   +  
Sbjct: 228 QDTNYAQHCIVLQLTEKY----------RHVCVVGDDAQSIYSFRGANIDNILKFTSLY- 276

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                  +   + +L  ++RST  I+   + +             S              
Sbjct: 277 -------KDARLFKLEQNYRSTQTIVKAANSLIEKNREQIRKEVFS-------------- 315

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                        ++        + +Y D    E         +A  I+ +         
Sbjct: 316 -------------ENDKGEPITVFNAYSDVEEGEI--------VANKIAQL--------- 345

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K+     +  VL R    + +     R       +               IKD++A  
Sbjct: 346 RTKKGYSYDEFAVLYRTNAQSRIFEEALR----KRGVPYRIYGGLSFYQRKEIKDVIAYF 401

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQK-------FANCG 477
           R  ++  D+ +F  ++  P        + KI    +    ++++ + +            
Sbjct: 402 RLAVNPNDEEAFKRVINYPARGIGNTTLNKIIDAANVHRVSLWKVLNEPLTYGVSLTKGT 461

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
            +K Q     I   +        ++    I+               E     + ++E +N
Sbjct: 462 HTKLQAFRDLIAGFVEAVSHTGAYELGKDIVRQSGIINDIYQDRSPENLSRQENIEELIN 521

Query: 535 FTLRNE---QNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVF 589
                    +   ++   L   L +      +      +   V +MT+H+AKGLE   VF
Sbjct: 522 GMHDFCAGREEEGNTHILLTDYLSEVSLLTDQDSEGADDAPKVTLMTIHSAKGLEFKNVF 581

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +V     +F        +                                     EE  R
Sbjct: 582 VVGLEENLFPSPMAGDSY----------------------------------KQLEEERR 607

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YV +TRA +   +          K         + D       + +  + +   K E 
Sbjct: 608 LFYVAITRAEEHCFLSFAKTRFKYGKVEFSNPSRFLKDIDARYLNLPQEDIVSR--KVEE 665

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
            A  +      +TP         + D  +IP++    +K          P+ 
Sbjct: 666 GAKRFRREMDSDTPRYISGNSPSMFDGGEIPEEPRRFVKPAAPRVLRRIPAA 717


>gi|269798726|ref|YP_003312626.1| recombination helicase AddA [Veillonella parvula DSM 2008]
 gi|269095355|gb|ACZ25346.1| recombination helicase AddA [Veillonella parvula DSM 2008]
          Length = 1288

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/664 (17%), Positives = 210/664 (31%), Gaps = 53/664 (7%)

Query: 52  TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL----KEKLKKSQDEF 107
             Q  +      +           +  + +  +    +  +   L    K+ LK  Q   
Sbjct: 272 AAQSWNDMGDACKHMDTFIKDQF-RMGSKEAQVYDPILVAEFKSLGVQNKDDLKAMQTAI 330

Query: 108 IKIRDRFNTYK---MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL---- 160
             + +     +    +      + L    +  Y + K++  ++DF DL      LL    
Sbjct: 331 FTVPEATLQEQFKAQYPIIEGLVELTIAFHKAYRDMKQEQGIMDFSDLEHLCLALLVEPG 390

Query: 161 -KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            +     + +  ++      I++DE QDT+ +Q  +I  +           S     F V
Sbjct: 391 TEDDPQPSEVAKELQDTFKEIMVDEYQDTNGVQETIINLI-----------SRVDNRFYV 439

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD KQ+IYSF  A+    + +                 I+L  +FRS A+IL   + +F 
Sbjct: 440 GDVKQAIYSFRMADSSLFMEKYNTY----GGTDAVERRIDLAKNFRSDANILAATNFLFY 495

Query: 280 IPENAQGLSEDSTTTIRHRSSR-------IGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
                     + T        R           G V+L    VS+     +   E     
Sbjct: 496 QIMTEDAAELNYTEAESLIPGRIVEDVPEDWVGGDVELQLLDVSKDTLGASESDE----- 550

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIF--SNGKKRVIQAKDILVLVRKRKDTPLIT 390
            D      +       I   I  +          +G  R I+ +D  +L R         
Sbjct: 551 -DEGDDPENNERELDFIIQKIKEIHAAKKQVQNPDGTFRQIEWRDFAILRRSLAGWGTRA 609

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                      I  V N+R    +   I+ L+AL   I + E DL    +L S L     
Sbjct: 610 V---EAMRQAGIPAVVNERDGYFEAQEIQLLLALLSIIDNPEQDLPMAAVLHSGLVGLDA 666

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           +++  +     E                 +    I ++     +++     D    I  +
Sbjct: 667 NELGALRLS-GEGSLWSLMPAYAEVAQDERLLAFIGHMERWRTLSRRHGVTDLLWDIYES 725

Query: 511 KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---- 565
           +           G      +    +     E + +  L   +  +E    + +       
Sbjct: 726 QDYVNYVGAMPNGLVRRANVLALYDRAKGYEASGFRGLFRFLRFVESLRDSNQDMPLANV 785

Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            S   N VR+MT+H +KGLE PVVFL     +        ++ I  +            +
Sbjct: 786 VSEADNVVRLMTIHKSKGLEFPVVFLSGVQKRFNMMDLRSELLIDKNAGLGLKGYFPDIR 845

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                     +    + + + E  R+LYV +TRA D+L +          K    T  ++
Sbjct: 846 VSFPTMPWFYVKDVKEAALKAEEQRILYVALTRARDKLFMTGFIKGFKNSKGVLSTMGEL 905

Query: 685 VYDS 688
           + ++
Sbjct: 906 IKNA 909



 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 53/171 (30%), Gaps = 13/171 (7%)

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                L+S          G ++H+ +Q +  +   +               +  +E   L 
Sbjct: 1110 KPQALQSKEDVLTGAQWGTLMHEAMQWLPLVKYTQASLTKELDALVAKGTFTEEERNLLS 1169

Query: 826  L-SITRLLENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQ 875
              S+ +   + +    + +     E+  S               +++ + G ID      
Sbjct: 1170 DTSLYKFFSSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGIIDTAFEES 1229

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                + +YKT        E +   +  Q+ +Y++ L+       +    IY
Sbjct: 1230 GEWVLVDYKTDRVTSG--EDLIKRYKIQMDLYKEALQRL-TGMPVKACYIY 1277


>gi|291166490|gb|EFE28536.1| ATP-dependent DNA helicase PcrA [Filifactor alocis ATCC 35896]
          Length = 725

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/549 (18%), Positives = 177/549 (32%), Gaps = 113/549 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y++       +DF+D+I  T  +L++ +    I +    +  HIL+DE QDT+ 
Sbjct: 167 QEIYDMYQKRLYSANAIDFDDIIFYTVKILEEYEE---ISFFYQGKFKHILVDEYQDTNY 223

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+  I+ L+E            + L  VGD+ QSIY + GA+ + +L  ++        
Sbjct: 224 LQYRFIKILSE----------KHQNLCVVGDDDQSIYRWRGADVRNILEFEKD------- 266

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +   II+L  ++RST  IL V   V S                  +       G + +
Sbjct: 267 -HKDTKIIKLEQNYRSTQTILNVAYDVISKNIGRMNK----------KLWTENGTGELII 315

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            +++ S+ +                             +A  I  ++             
Sbjct: 316 LKKLYSEKEEGA-------------------------WVANQIKELVDK---------FD 341

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +I VL R    +  I            +           D   IKDL+A  R I +
Sbjct: 342 YSLDEIAVLYRANAQSRAIEDAF----VLKDMPYQVFGGIKFYDRKEIKDLLAYLRLISN 397

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------VYEYIQKFANCGISKFQHV 484
             D  SF  ++  P        I KI               + + +  F+       +++
Sbjct: 398 TSDISSFRRIINIPKRGIGIKTIEKIEFNALSDSKTVYEYLLSDELLDFSVKVRKNLKNL 457

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
           I  +     +++     +    IL     R++       E     + L EFL+      Q
Sbjct: 458 ISMMETFRSMSELIPLDELIETILDHTGYRKELEEEKTEEANNRLENLREFLSVAKDFYQ 517

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 + L   L       ++       +V +MT+H+AKGLE   VF+V     +F   
Sbjct: 518 TKEKE-EGLSDFLFGLSLATEQDEDETEGKVSLMTLHSAKGLEFRAVFIVGMEEGLFPIS 576

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                             YVG+TRA ++
Sbjct: 577 RAVYDEYELEEERRL----------------------------------CYVGITRAKEK 602

Query: 662 LIICKHSNT 670
           L +      
Sbjct: 603 LYLTYTGER 611


>gi|86739360|ref|YP_479760.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3]
 gi|86566222|gb|ABD10031.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3]
          Length = 838

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/780 (13%), Positives = 217/780 (27%), Gaps = 144/780 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + NE  E +   + P      VS  +      + +    +                 +  
Sbjct: 121 AANEMRERVSALVGPRARAMWVSTFHSACVRILRSEAKRL-----GFGSTFSIYDAADAQ 175

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P+           +  L  ++   ++E I      +     ++T   
Sbjct: 176 RLITLVTRDLDLDPK--------RHPARGLAAQISNLKNELIDWEAARD-----RATNHL 222

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + A Y++   +   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 223 ERTVAEVYAAYQQRLAQANALDFDDLIMMTVNLLQSFPD---VAEHYRRRFRHVLVDEYQ 279

Query: 187 DTSLIQWEVIRSL-------------------TEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
           DT+  Q+ ++R L                           +    P  L  VGD  QSIY
Sbjct: 280 DTNHAQYVLVRELVGQPAYFGGGSAPVEPAEPAAGPGTWASGAVPPAELCVVGDADQSIY 339

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA  + ++  +              ++I L  ++RST  IL+  + + +     +  
Sbjct: 340 AFRGANIRNIVEFEEDFPN--------AAVILLEQNYRSTQTILSAANAMIARNNQRKAK 391

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              S                               + ++    +  +   +       A 
Sbjct: 392 RLWS----------------------------DAGDGEKIVGFAADNEHDE-------AA 416

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  +  +            ++ +  D+ V  R    + +   +         +     
Sbjct: 417 FVAEEVDRLSDA---------KLARPADVAVFYRTNAQSRVFEEIF----VRVGLPYRVV 463

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                 +   I+DL+A  R + +  D ++   +L  P     E     +          +
Sbjct: 464 GGVRFYERKEIRDLLAYLRVLANPSDTVNLRRILNVPRRGIGERAEAALAGFADVERIGF 523

Query: 468 EYIQK-------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
               +        A       +     + EL  +A           +L       + ++ 
Sbjct: 524 AQALERVDEVPGIAARSAKAVREFTALLAELRAVAADNPV-AVVEGVLERTGYLSELLAE 582

Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNE-VRIM 575
              E    ++ L E +       +      L E + ++       +       +  V +M
Sbjct: 583 DTVESQGRVENLQELVGVVQEFARRLPEGTLAEFLEQVSLVADADQVPTDDGSDGVVTLM 642

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVFL      VF H                                   
Sbjct: 643 TLHSAKGLEFPVVFLTGLEDGVFPHLRTLGDPT--------------------------- 675

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    EE  RL YVG+TRA  +L + +    S   +         + +        
Sbjct: 676 -------QLEEERRLAYVGVTRARIRLYLTRAVMRSAWGQPAYNPPSRFLGEVPDTLVDW 728

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
           +++                                 +             P    + E  
Sbjct: 729 RRLADPPPAPAGTSWGSSGGFGSGATGRGAAGAPAARKPLPNSPFSGRARPAARAVLELR 788


>gi|329770497|ref|ZP_08261875.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325]
 gi|328836246|gb|EGF85915.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325]
          Length = 728

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/544 (17%), Positives = 182/544 (33%), Gaps = 112/544 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +  HY+   KKN VLDF+DL++ T  L +K      +      +  +I +DE QDT+
Sbjct: 168 VSEIYGHYQNYLKKNSVLDFDDLMLKTIVLFEKHPE---VLSIYQNKFQYIHVDEYQDTN 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           +IQ+++I+ L+             + +  VGD+ QSIYS+ GA    ++  ++       
Sbjct: 225 VIQYKLIKMLSA----------VHKNVCVVGDDDQSIYSWRGACSDNIINFEKDYDN--- 271

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L  ++RS + IL   + V       +  +                     
Sbjct: 272 -----VELIFLDQNYRSNSTILDAANAVIKNNTERKEKA--------------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW       +++ N +   + +  D    +         IA  I  +             
Sbjct: 306 LWS------ENKSNRKISIYGALNDKDETDD--------IARKILELNKEG--------- 342

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I+ +D+ +L R    +  +          + I               ++DL+A    I+
Sbjct: 343 -IKFRDMAILYRANFLSRSMENS----CLSFGIPYKLIGSLKFLQRQEVRDLLAYLNVIV 397

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANC-GISKFQHVIKY 487
           ++ D+ S   ++  P        + KI         +++E ++         K    +  
Sbjct: 398 NRADEFSLRRIINVPKRGIGATSMEKIDKYANEYGLSLFEALENIDMIGVSKKITTNVHL 457

Query: 488 IHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
           +  LI      +  S  +    I                      + + E ++   +   
Sbjct: 458 LTNLIKKYSNTENYSIDELIIGIYKDSGYENMLKESSDPYAESRIENISELVSSAKQFSS 517

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            +      LI  + +   T         + V + TVH AKGLE  VVF++     +F   
Sbjct: 518 MN----DSLIDFISEMSLTSDADDENIEDAVVLSTVHAAKGLEYDVVFIMGLEESLFPS- 572

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                        I        +++  EE  RL YV +TRA ++
Sbjct: 573 -----------------------------IRDADSSEDERNKMEEERRLAYVAITRAKER 603

Query: 662 LIIC 665
           L + 
Sbjct: 604 LFMS 607


>gi|256957408|ref|ZP_05561579.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5]
 gi|257077596|ref|ZP_05571957.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1]
 gi|294779926|ref|ZP_06745307.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1]
 gi|256947904|gb|EEU64536.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5]
 gi|256985626|gb|EEU72928.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1]
 gi|294452975|gb|EFG21396.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1]
          Length = 752

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 91  FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 150

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 151 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 209 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 258 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 309 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 335 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 382 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 441

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 442 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 501

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 502 LESQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEES 559

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 560 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 594


>gi|257066475|ref|YP_003152731.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
 gi|256798355|gb|ACV29010.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
          Length = 731

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 185/578 (32%), Gaps = 118/578 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YEE K     LDF+DLI     L  +            ++  ++ +DE QDT+  
Sbjct: 169 EIYKKYEEKKFYYNALDFDDLIDKVLYLFVRS---KETLDFYQKKFEYVFVDEYQDTNNS 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E+I+                  +  VGD  QSIYSF GA    +L  ++         
Sbjct: 226 QYELIKYFAGF----------HNNVTVVGDADQSIYSFRGANISNILNFEKDF------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +    I+L  ++RST +IL   + +       +                       +LW
Sbjct: 269 -KDAETIKLEQNYRSTKNILETANLLIENNSERKDK---------------------ELW 306

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                         +  + +      +       A+ +   I +++              
Sbjct: 307 -------TENKGGDRVIYKANSVESEE-------AKFVLDNIKSLMQEG----------Y 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            AKD  +L R    +     +      D              D   IKDL++  + +++ 
Sbjct: 343 DAKDFAILYRTNAQSRPFEEILMKNLLD----YKVVGGLKFYDRKEIKDLVSYLKILVNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484
           +DDLS   ++  P        I ++    +       +  T   +    ++      +  
Sbjct: 399 KDDLSLKRIINEPKRGIGNKSIEELQRVANLHNIAILDLITDDSFNTLISDRIKKSTEKF 458

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
              + E+          D    +L      +   S +  E    ID ++EF++     ++
Sbjct: 459 YLPLREIFDNVDNYKIVDLIEDVLDKSGYMKSLESSYSVEDRARIDNINEFISSASEYQE 518

Query: 542 NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           N+      +   LE            +  N + +MT+H AKGLE PVVF+V     +F  
Sbjct: 519 NNPED--NIYDYLENLSLLSDLDKTESTDNSISLMTMHAAKGLEFPVVFVVGLDEGLFPG 576

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                       +   EE  RL YV +TRA +
Sbjct: 577 KRSID-----------------------------------EGNIEEERRLFYVAITRAQE 601

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           +L +       N  K         + +   N +  +KI
Sbjct: 602 KLFLSSAEARRNYGKPVFYKPSRFIDEIIDNIKVEEKI 639


>gi|322515360|ref|ZP_08068354.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus
           ureae ATCC 25976]
 gi|322118587|gb|EFX90815.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus
           ureae ATCC 25976]
          Length = 732

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 110/551 (19%), Positives = 190/551 (34%), Gaps = 121/551 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++   +  +LDF +L+I   +L + +     I  +  Q    ILIDE QDT+ I
Sbjct: 176 QIYQIYQDVCDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L  +             +  VGD+ QSIY + GA+ + + R     QK     
Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ S  E+  G +                     LW
Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    Q +         F+ L +       AR +A  I      +           
Sbjct: 314 -------TDQDDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGSL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  I    R+   T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ I+ L    +     +    ++      + +    G +    I+ L+E +  T +   
Sbjct: 466 VELINALEQETEQMPLFEKTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    S L   ++               + + V +MT+H+AKGLE P VF+V     +
Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QAFPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          +   +E  RL YVG+TR
Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608

Query: 658 ASDQLIICKHS 668
           A  +L I    
Sbjct: 609 AKKKLTISYAE 619


>gi|255971180|ref|ZP_05421766.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1]
 gi|256761491|ref|ZP_05502071.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3]
 gi|255962198|gb|EET94674.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1]
 gi|256682742|gb|EEU22437.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3]
 gi|323479917|gb|ADX79356.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis 62]
          Length = 746

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 25  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 84

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 85  FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 144

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 145 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 202

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 203 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 251

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 252 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 302

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 303 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 328

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 329 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 375

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 376 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 435

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 436 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 495

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 496 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 553

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 554 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 588


>gi|270308367|ref|YP_003330425.1| UvrD/REP helicase [Dehalococcoides sp. VS]
 gi|270154259|gb|ACZ62097.1| UvrD/REP helicase [Dehalococcoides sp. VS]
          Length = 738

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 185/551 (33%), Gaps = 118/551 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   YE+  K+N  LDF+DL++    L K+      +  +  +   H+++DE QD
Sbjct: 167 EVVGRVYELYEKRLKQNKALDFDDLLLKVVQLFKQHPE---VLARYQERYLHVMVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+L+Q+E+++ L+  +          + +  VGD  QSIYS+  A+ + V   +      
Sbjct: 224 TNLVQYELVKMLSAKY----------KNICVVGDPDQSIYSWRSADLRNVFNFETD---- 269

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST +IL     V +     + +S                   
Sbjct: 270 ----NPGAKVILLEQNYRSTKNILEAASCVIAPNSGRKPIS------------------- 306

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + Q  +    F+   +       A+ +   I  +           
Sbjct: 307 --LW-------TENESGQPIAVVETFNEQEE-------AQFVVSEIEKLTR--------- 341

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI +L R    +  +          Y +               +KD++A  R 
Sbjct: 342 YEKFSPGDIAILYRTNAQSRALEEAF----IRYGMPYRLVSGTRFYQRREVKDIVAYLRL 397

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480
           + + +D +S   ++  P        +  +    R +  ++YE +   ++    K      
Sbjct: 398 LQNPQDSVSLQRVINIPTRGIGAKTLSDLGQFAREQDISLYESLVNLSDENAPKPPIPSR 457

Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
                      +  L+  A+     +    +L     R+    S  G E  D + E    
Sbjct: 458 GLKPLTDFGLLLKSLVADARNLPLLNLLDRLLEGINYREFLFASEDGEERWDNILELRTV 517

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             + ++ +    + L + LE               + V ++T+H AKGLE PVVF+V   
Sbjct: 518 AQQYQEIAPP--EGLSAFLESVALVSDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGME 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H                                         +  +E  RL YVG
Sbjct: 576 EGVLPHSRSFDDP----------------------------------AQMQEERRLCYVG 601

Query: 655 MTRASDQLIIC 665
           +TRA  +L + 
Sbjct: 602 VTRARKRLYLV 612


>gi|149914444|ref|ZP_01902975.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b]
 gi|149811963|gb|EDM71796.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b]
          Length = 786

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 111/636 (17%), Positives = 193/636 (30%), Gaps = 117/636 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   ++   +DF DL+++   + +  +    +  +  +    IL+DE QDT++ 
Sbjct: 195 ALYMQYQARLRELNAVDFGDLLLHVVTIFQTHED---VLAQYQRRFRFILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L            + R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLAG----------AHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL     V +  +   G                       LW
Sbjct: 296 --GAKVIRLEQNYRSTPHILAAAGGVIAANKGRLGK---------------------DLW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++     ++D   +       AR I   I  M            R  
Sbjct: 333 -------TEAEAGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGMRPF 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + + I+D MA  R ++S 
Sbjct: 374 SLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRLVISP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGISKFQHV 484
            DDL+F  ++ +P     +    KI  T R     + E        +     G ++   +
Sbjct: 430 ADDLAFERIVNTPKRGLGDKAQQKIQVTARQHGVPLVEGAAILLREKGLTGKGATELATL 489

Query: 485 IKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           +  +     +      S  D   +IL        + +    E    ++ L E +    + 
Sbjct: 490 LDGLARWGRMTHDADLSHVDLAEIILDESGYTGMWQADKTPEAPGRLENLKELVKALEQF 549

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +         +V IMT+H AKGLE PVVFL      +F 
Sbjct: 550 EN--------LSGFLEHVSLIMDNESEEQGEKVSIMTLHAAKGLEFPVVFLPGWEDGLFP 601

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +    +   EE  RL YVG+TRA 
Sbjct: 602 SQRS--------------------------------MDESGQKGVEEERRLAYVGITRAE 629

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +   I    N     +   +     + +       V               A        
Sbjct: 630 EICTISFAGNRRVYGQWQSQMPSRFIDELPQAHVDVLTPPGLYGGAYGAAAASAGPAVQS 689

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                  E  +      +++  +      +   E  
Sbjct: 690 GLEQAAAEANVYNSPGWRRLQARAGERPVSQPREQR 725


>gi|257080987|ref|ZP_05575348.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol]
 gi|256989017|gb|EEU76319.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol]
          Length = 752

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 91  FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 150

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 151 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 209 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 258 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 309 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 335 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 382 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 441

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 442 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 501

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 502 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 559

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 560 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 594


>gi|282600070|ref|ZP_05972885.2| DNA helicase II [Providencia rustigianii DSM 4541]
 gi|282566938|gb|EFB72473.1| DNA helicase II [Providencia rustigianii DSM 4541]
          Length = 764

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 118/694 (17%), Positives = 223/694 (32%), Gaps = 132/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +     S  +             +  +   L   S+       
Sbjct: 74  GAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRINHLIGTSEGGMWIGT 133

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L Q        ++    + + +   ++  LK    +  +   R         
Sbjct: 134 FHGLAHRLLRQHYLDANLPQDFQILDSDDQYRLIRRLLKAMNLDEKQWPPRQGMWYINGK 193

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +           + +   Y+EA  +  ++DF +L++  ++L   +     +
Sbjct: 194 KDEGLRPQHIESYGNPVEATWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---V 250

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   +IL+DE QDT+ IQ+  IR L  D             +  VGD+ QSIY +
Sbjct: 251 LQHYRERFTNILVDEFQDTNSIQYAWIRILAGD----------TGKVMIVGDDDQSIYGW 300

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R                  I L  ++RST +IL   + + +   +  G + 
Sbjct: 301 RGAQVENIQRFLNDFP--------GAETIRLEQNYRSTNNILKAANTLIANNSDRLGKN- 351

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW           + +  S    F+ L +       AR +
Sbjct: 352 --------------------LW-------TEDGDGEPISLYCAFNELDE-------ARYV 377

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                    +D  +L R    + ++            ++      
Sbjct: 378 VGRIKQWHENGGAL----------QDCAILYRSNAQSRVLEEAL----IQSAMAYRIYGG 423

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD ++  R I ++ DD SF  ++ +P     E  +  +    R +  T++E
Sbjct: 424 QRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGERTLDTVRQTARDQQLTLWE 483

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +             S  +  ++ I  L    Q    H     ++     R  +    G
Sbjct: 484 ACEYLLREQVLGGRAASSIERFLELIDALAKETQDMPLHVQADRVIKDSGLRAMYEQEKG 543

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +     + L+E +N T     Q+    L  L + L        +     + + V++MT+
Sbjct: 544 EKAQARIENLEELVNATRDFSYQDEDQDLMPLQAFLSHAALESGESQADVSQDAVQLMTL 603

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE PVVF+V     +F  +                                    
Sbjct: 604 HSAKGLEFPVVFMVGVEEGMFPSQMSMDESG----------------------------- 634

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                  EE  RL YVG+TRA ++L I    +  
Sbjct: 635 -----RLEEERRLAYVGITRAMEKLTITYAESRR 663


>gi|116490506|ref|YP_810050.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1]
 gi|290889906|ref|ZP_06552993.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429]
 gi|116091231|gb|ABJ56385.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1]
 gi|290480516|gb|EFD89153.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429]
          Length = 748

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/608 (17%), Positives = 203/608 (33%), Gaps = 119/608 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    YE    ++  +DF+DLI+ T  L K+   +  + +    +  +I +DE QD
Sbjct: 168 EAVSESYDLYERRLTQSQSMDFDDLIMRTIQLFKQ---APDVLHYYQHKFKYIHVDEYQD 224

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q++++  L    F         R L  VGD  QSIY + GA+   +L  ++     
Sbjct: 225 TNGAQYKLVEMLAAGDF-------GSRNLAVVGDSDQSIYGWRGADMNNILNFEKDFP-- 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RST  IL   ++V       +  +                   
Sbjct: 276 ------GAKTVLLEQNYRSTKHILMAANQVIQNNIERKPKN------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +  +     +           S S  A  +   I   +          
Sbjct: 311 --LW-------TNNQDGNLIHYYRA-------QSESDEAHYVLTKIQAGVKKGRSL---- 350

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  +L R    + +   +    K    I           +   I+D++A  + 
Sbjct: 351 ------NDFAILFRTNAQSRIFEQVFNSNK----IQYTMVGGTRFFERKEIQDIVAYLQL 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISK 480
             + ++D +F  ++  P  +     I K+      +  ++       +   + +    S 
Sbjct: 401 TANLDNDTAFERIVNEPKRSIGSSSIEKLRSFAAKKGLSLMKSIVVLDDESRLSKKAQSN 460

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
           F+   + I      + F S  +    I      R+Q++ +   E    ++ LDEFL+ T 
Sbjct: 461 FRKFAQMIQVFSDQSHFLSLTELANEIFDQTGIREQYVKKDDLESQSRVENLDEFLSQTK 520

Query: 538 RNEQNSYSSLQE----LISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVD 592
           + +Q+      E    L+  L Q            +  +V +MTVH AKGLE PVVF+V 
Sbjct: 521 QFDQDYDEEASETNNPLVDFLGQTALVSDLDSYDESAGQVTLMTVHAAKGLEFPVVFIVG 580

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F                                        +++   EE  RL Y
Sbjct: 581 LEEGIFPS----------------------------------ARAMMERDGLEEERRLAY 606

Query: 653 VGMTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           V +TRA ++L +            + +    + D + DS  + E     +     + D  
Sbjct: 607 VAITRAQEELYLTNAFGRLLYGRAQSNKPSMFLDEIDDSLLDKENPSSSRTQTLSDYDRP 666

Query: 710 IAYEWSTH 717
           + ++  + 
Sbjct: 667 MPFDRKSE 674


>gi|326336392|ref|ZP_08202563.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325691566|gb|EGD33534.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 773

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/689 (16%), Positives = 215/689 (31%), Gaps = 122/689 (17%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150
           K   +  ++   ++  I ++  F  + + ++   +       +  +Y E   K   +DF+
Sbjct: 135 KYKQIASRISSYKNNLITVKAYFENHDLQEADAMAKRPRIGDIYRNYVERCFKAGAMDFD 194

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN+LL +      +  K      +IL+DE QDT+  Q+ ++R+L + F       
Sbjct: 195 DLLLRTNELLNRFPE---VLAKYQNRFRYILVDEYQDTNHSQYLIVRALADRF------- 244

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              + +  VGD+ QSIY+F GA    +   ++   K          I  L  ++RST +I
Sbjct: 245 ---QNICVVGDDAQSIYAFRGANIDNIFNFQKDYPK--------VGIYRLEQNYRSTKNI 293

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + V    +                                V   +++   + +   
Sbjct: 294 VEAANNVIEHNKARLEK---------------------------VVWTENENGSRIKVHR 326

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           S  D+           R +A          TIF    ++     D  VL R    +  I 
Sbjct: 327 SPTDADEG--------RFVA---------GTIFETAMQKQRSYGDFAVLYRTNSQSRAIE 369

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I            H  IKD++A  R + ++ D+ +   ++  P     +
Sbjct: 370 DALR----KRDIPYYIYGGLSFYQHKEIKDILAYFRLVANENDEEALQRIINFPARGIGD 425

Query: 451 DDIFKICTQRHE----------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
             + K+    +E               +Y  K  +   ++       I     + +    
Sbjct: 426 TTMEKLTLCANEFKVPIFTIIKNLATMDYGLKINSATRNRLLEFANMILSFRIMMETHDA 485

Query: 501 HDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISEL 554
                 I        +F       G E +  ++E LN        +Q    +   L+  L
Sbjct: 486 FSLAEHITKRTGILNEFKKDGTPEGVERMQNIEELLNGIRDFVEGQQEVEDASNSLVEFL 545

Query: 555 EQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +             + N V +MT+H AKGLE P VF+V     +F               
Sbjct: 546 QDVALATDMDKEVEDDNRVSLMTIHLAKGLEFPYVFIVGMEEDLFPS------------- 592

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                 +    ++  EE  RL YV +TRA  Q  +    N    
Sbjct: 593 ---------------------ALSQNTRAELEEERRLFYVALTRAEKQAYLTYTENRYRW 631

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K         + +           K      K       ++         ++       
Sbjct: 632 GKLMDAEPSRFIEEIDERYLEYLTSKENYRY-KPLINVDTFAPIDKSKLRQQKPTNTPPP 690

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTI 762
             ++   ++L         +   ++   I
Sbjct: 691 AYKKPNEEQLKKLRLQKPEQAKAISVGDI 719


>gi|330813748|ref|YP_004357987.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486843|gb|AEA81248.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 744

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 116/595 (19%), Positives = 200/595 (33%), Gaps = 114/595 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+E  K    +DF DLI++   + K       IR    +   +IL+DE QDT+
Sbjct: 176 ALKIYRIYQERLKMMNCVDFGDLILHCVTIFKN---FKEIRESFKRNFKYILVDEFQDTN 232

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ   +  +T D           + +  VGD+ QSIYS+ GAE K +L  ++       
Sbjct: 233 FIQNLWLNYITGD----------TKNICVVGDDDQSIYSWRGAEVKNILDFEKNFSN--- 279

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +IL     + S  ++  G                       
Sbjct: 280 -----TKTIKLEQNYRSTKNILNTASSLISNNDDRLGKK--------------------- 313

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W           + ++    SY D   +       A   +  I   +      +N    
Sbjct: 314 IW-------SDFSDGEKVWINSYSDGRDE-------ASGTSDIIEKELAKQFSLNN---- 355

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 I +LVR    T               +           +   IKD +   R I 
Sbjct: 356 ------ISILVRASFQTREFEERF----IRIGLPYRVIGGVKFYERAEIKDALCYLRLIH 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQ 482
            + DDL+F  ++ +P  +  +  + KI    R+  + +++         +         +
Sbjct: 406 QKNDDLAFERIVNTPKRSIGDTTLKKIHEFSRNSNQNLFDTSVSLLDGDELKPKTKESLK 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            +IK +++   +++     +    +L      +  I     E    L+          ++
Sbjct: 466 LLIKNLNQWTKLSEKLDHVELLERVLDESGYTKMLIDEKSPEAEARLENLKEL-----RS 520

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           S  +   LI  LE            +  ++ +MT+H AKGLE   +FL      +F H+ 
Sbjct: 521 SMKNYSNLIEFLENISLQTAIDEEWDGEKINLMTIHAAKGLEFECIFLPGWEEGMFPHQK 580

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                            I+       +E  RL YV +TRA  +L
Sbjct: 581 S--------------------------------IEEKGDVAVQEERRLAYVAITRAKQRL 608

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            I   +N       N    +     S   DE  KK    N I +D    +E+S  
Sbjct: 609 FISFANNRKFFGNKNDNNDWMPSMPSRFIDELDKKYLKINEIAEDPHQDFEFSQD 663


>gi|154174762|ref|YP_001408534.1| UvrD/Rep family helicase [Campylobacter curvus 525.92]
 gi|112803087|gb|EAU00431.1| helicase, UvrD/Rep family [Campylobacter curvus 525.92]
          Length = 689

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/546 (19%), Positives = 194/546 (35%), Gaps = 124/546 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   YEE  + N ++DF+DL++ T  +L + +    +  +I     +I++DE QDT+
Sbjct: 172 AAAIYDKYEEYLRANNLVDFDDLLVLTYKILDENED---LAREISNRYRYIMVDEYQDTN 228

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q++++R L            +   +  VGD+ QSIY + GA+ + +L  K   +    
Sbjct: 229 DLQYKLLRKLCL----------THENICVVGDDDQSIYGWRGAKIENILNFKDQFKN--- 275

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  II L  ++RST  IL   +++     N  G    S           G+   V 
Sbjct: 276 -----TKIIRLEQNYRSTTPILKAANELIDHNRNRLGKKLLSV---------KGEGEGVN 321

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L                           +    S+ A +IA +I  ++            
Sbjct: 322 LL--------------------------ESLDESVEAGKIAKSIKELLEKG--------- 346

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             QAKDI +L R    +  +           +I           +   +KD+++  R I+
Sbjct: 347 -AQAKDIAILYRINALSRSLEDGL----TKERIPYKMVGGVKFYERAEVKDVISYLRLII 401

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--------EYIQKFANCGISKF 481
           +Q DD S   ++  P     +  + K+    +E +T          +  + F+    +  
Sbjct: 402 NQNDDFSLKRIINRPKRGLGKVSLDKLEKMAYEGKTSMFDAILNIDDKDEAFSKKIKTAL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNE 540
               + + EL       S ++    +      ++ + S   GNE    +DEF        
Sbjct: 462 VEFTQILKELQE---TNSLYELIDKMEAKFGIKKYYESLPDGNERAANIDEFYAMLKDQI 518

Query: 541 QNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + + S  L+E ++EL             +   + IM+VH +KGLE   +F++      F 
Sbjct: 519 KQNPSFELEEFLNELALVSEQDNI----SSEAISIMSVHASKGLEFEYLFVIGLEEGFFP 574

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                     S  EE  RL YV +TRA 
Sbjct: 575 -------------------------------------LIGDGSDIEEERRLAYVAITRAK 597

Query: 660 DQLIIC 665
             L + 
Sbjct: 598 KLLTLS 603


>gi|29375317|ref|NP_814471.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583]
 gi|256617608|ref|ZP_05474454.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200]
 gi|256854412|ref|ZP_05559776.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8]
 gi|256959857|ref|ZP_05564028.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96]
 gi|256964441|ref|ZP_05568612.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704]
 gi|257083649|ref|ZP_05578010.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1]
 gi|257086081|ref|ZP_05580442.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6]
 gi|257089148|ref|ZP_05583509.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188]
 gi|257415291|ref|ZP_05592285.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis AR01/DG]
 gi|257418333|ref|ZP_05595327.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11]
 gi|300861762|ref|ZP_07107842.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11]
 gi|29342777|gb|AAO80541.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583]
 gi|256597135|gb|EEU16311.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200]
 gi|256709972|gb|EEU25016.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8]
 gi|256950353|gb|EEU66985.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96]
 gi|256954937|gb|EEU71569.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704]
 gi|256991679|gb|EEU78981.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1]
 gi|256994111|gb|EEU81413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6]
 gi|256997960|gb|EEU84480.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188]
 gi|257157119|gb|EEU87079.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ARO1/DG]
 gi|257160161|gb|EEU90121.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11]
 gi|300848287|gb|EFK76044.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11]
          Length = 752

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 91  FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 150

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 151 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 209 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 258 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 309 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 335 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 382 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 441

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 442 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 501

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 502 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 559

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 560 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 594


>gi|327459916|gb|EGF06256.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1057]
          Length = 762

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYKAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLIYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+++++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRNVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEMSLLDASANILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +  D    +L          ++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMLLDLRERLDDYTVTDLVEAVLEKTGYAASLAAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQ-----NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            ++     +  S L +L   L +              +EV +MT+H AKGLE PVVFLV 
Sbjct: 516 FDESPDNPSDESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF      +                                              Y
Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           VG+TRA   L +   ++     K+N       + +   +    + +    
Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLNYQGLARPA 651


>gi|295697356|ref|YP_003590594.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912]
 gi|295412958|gb|ADG07450.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912]
          Length = 755

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 121/743 (16%), Positives = 234/743 (31%), Gaps = 133/743 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +                  + ++   L      +     
Sbjct: 38  GAGSGKTRVLTHRVAYLVATRKAPPWGILAITFTNKAAREMRERIGRLVGPEAEEIWVST 97

Query: 66  FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT------ 116
           F       L +   P    ++    + + ++  +K+ L +   +  K   R         
Sbjct: 98  FHSYCVRVLRRHIEPLGFTRSFSILDASDQTTAVKQVLGEMNLDTKKFDPRRMAGAISAL 157

Query: 117 -------YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                   +  +        +   +   Y++  + N  LDF+DL++ T +L    D    
Sbjct: 158 KNELITPSQAAERARDFFQEVVAQVYERYQQKLRVNNALDFDDLLVKTVELW---DAFPE 214

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 +   ++ +DE QDT+  Q+E+++ L +            R L  VGD  Q+IY 
Sbjct: 215 TLEDQQRRFVYLHVDEYQDTNHAQYELVKRLAQ----------RRRNLCVVGDSDQAIYG 264

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +               +I+L  ++RST  IL   + V +     +   
Sbjct: 265 WRGADVRNILDFEADYP--------DAKVIKLEQNYRSTGRILAAANAVIAHNRQRKEKR 316

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                 +        D   +       A  
Sbjct: 317 LWSDRP----------------------------QGEPVIVHEAMDEQGE-------AYF 341

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I N +              +  D+ VL R    + ++  +         I  V   
Sbjct: 342 VVEEIRNHVEQGG----------RYGDVAVLYRMGAQSRVLEEMM----MKASIPYVMVG 387

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                +   IKDL+A  R +++  DD S   ++  P     E  + K          ++Y
Sbjct: 388 GVKFYERKEIKDLLAYLRILVNPRDDFSTERVINVPKRGIGEGTLTKAAAFAAERNLSLY 447

Query: 468 EYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E ++K     +S       +  +     L  +  + S  +    +L     R+  I    
Sbjct: 448 EALEKVDQLDVSARAAAGIRQFVDLTAALRAMMPYLSVTELVEEVLNRTGYREALIREDT 507

Query: 523 NEVI---DVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
            E     + L+EFL+ T   ++    ++   L + L           +   + V +MT+H
Sbjct: 508 LEAQSRLENLEEFLSVTQEFDRRQDTAAEGGLEAFLADVALVSDLDMAETEDGVVLMTLH 567

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE PVVFLV     +F H  +                                   
Sbjct: 568 SAKGLEFPVVFLVGMEEGIFPHSRVLDDP------------------------------- 596

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN--DERVK 696
                 EE  RL YVG+TRA D+L+I +    +   +         + +           
Sbjct: 597 ---DQMEEERRLCYVGITRAMDRLLITRAQQRNLYGRWQANPPSRFLEEIPEALLQWSAP 653

Query: 697 KIKLTNSINKDEWIAYEWSTHHP 719
           +  L +     E  A + +   P
Sbjct: 654 RRSLRDRAAAPEPAAGKGALAWP 676


>gi|262201311|ref|YP_003272519.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247]
 gi|262084658|gb|ACY20626.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247]
          Length = 828

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/650 (16%), Positives = 192/650 (29%), Gaps = 148/650 (22%)

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++       +   S   +      + A Y+   +     DF+DLI  T  LL        
Sbjct: 172 ELVGPEQAVEAAASDEPAAQQIARIYAEYQRRLRAANAFDFDDLIGETVALLHAHPE--- 228

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     +   H+L+DE QDT+  Q+ +IR L  +         S   L  VGD  QSIY+
Sbjct: 229 VAEYYRRRFRHVLVDEYQDTNHAQYVLIRELVGEVPTAGGLEPSE--LCVVGDADQSIYA 286

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F GA  + +   +R               I L  ++RST  IL+  + V +  EN +   
Sbjct: 287 FRGATIRNIEEFERDFPN--------AETILLEQNYRSTQTILSAANAVIARNENRRDKR 338

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       DS        + +  D              
Sbjct: 339 ---------------------LW------TDSGDGELIVGYVADSDRDEST--------F 363

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I ++      +S G     +  DI V  R    +  +  +       + I      
Sbjct: 364 IAKEIESLTD----YSIGGSSSHKYSDIAVFYRTNTGSRALEEVF----VRHGIPYKVVG 415

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                +   ++D++A  R + + +D +S   +L +P     +     +     +   + Y
Sbjct: 416 GTKFYERKEVRDVVAYLRVVANPDDAVSLRRILNTPRRGIGDRAEACVAVHSENTGRSFY 475

Query: 468 EYIQKFA--------NCGISKFQHVIKYIHELIHIAQF---------------------C 498
           E +   A           I +    +  I  L                            
Sbjct: 476 ESLIDAAAGKVAMLNTRAIKQIGGFVDLIEGLRTDFLTAFGAAGESDEDVAFIDATEEGA 535

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---------------- 539
              +    I+     R +  +    +    +D L+E ++                     
Sbjct: 536 DIGELVDAIVERTGYRGELEASNDPQDGARLDNLNELISVAQEFSRDAAELAEDEAADDD 595

Query: 540 -------EQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFL 590
                  +         L + LE+                 V +MT+HTAKGLE PVVF+
Sbjct: 596 DPLESGRDTEGEPDPGSLAAFLERVSLVADADQLPDEGEGVVTMMTLHTAKGLEFPVVFV 655

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F H                                  +      +   E  RL
Sbjct: 656 TGWEDGHFPH----------------------------------MRAMGDPAELSEERRL 681

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            YVG+TRA ++L + +    ++  +         + +   +    ++ + 
Sbjct: 682 AYVGITRAKERLYLTRSITRASWGQPVSNPESRFLQEIPQHLLDWRRTEP 731


>gi|296127315|ref|YP_003634567.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
 gi|296019131|gb|ADG72368.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
          Length = 666

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/593 (16%), Positives = 190/593 (32%), Gaps = 123/593 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           AK +   Y+   K    +DF DLI  T DL         +  K  +   +I++DE QDT+
Sbjct: 163 AKRVYEVYQNYLKGYNAVDFNDLINLTIDL---YIEFPEVLNKYQERFRYIMVDEYQDTN 219

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++   L   +          R +  VGD+ QSIY+F GA+   +L  +        
Sbjct: 220 FAQYKLTSLLASKY----------RNIAVVGDDDQSIYAFRGADVSNILSFENEYP---- 265

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  I+ L  ++RST  IL     V S     +     +              G   
Sbjct: 266 ----DAKIVTLTKNYRSTKAILEAAHSVISNNTQRKNKEVVAE-------------GDEG 308

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +   ++   D +                        A+ +A +I          +    +
Sbjct: 309 IPPTIMPCEDERE----------------------EAQFVADSI---------INYSISK 337

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +  +D  VL R    + L     R       +       F   +   IKD++A     +
Sbjct: 338 RLNYEDFAVLFRMNAQSRLFEEAFR----LRGLPYTVVGAFQFYERKEIKDILAYLNLFV 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-------YEYIQKFANCGISKFQ 482
           + ED++S + ++  P        I  +     +           YE ++  +    +  +
Sbjct: 394 NPEDEVSLLRVINIPKRGIGAVAINNLNEASIKNGVSLYQTLLNYESMEDISPKAKAGIK 453

Query: 483 HVIKYIHELIHI-------AQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLD 530
             ++ I    ++        +    ++     L       + ++       G + ++ ++
Sbjct: 454 DFLEIIEHYHNLFTVDKNDIERPKLYENINKFLDVIAYHNEILNSSDTKEQGAKKMENVE 513

Query: 531 EFLNFTLRNEQNS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
             +N  L  E+++  ++L+  +  +       +         + +M++H AKGLE P V+
Sbjct: 514 SLMNGILEYEKSNKNATLKNYLDRILLMSIEEQNDDEEKKKGIMLMSIHAAKGLEFPYVY 573

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +      +  H                                        +   EE  R
Sbjct: 574 ICGMEDGIMPH----------------------------------HKSSSDEMGIEEERR 599

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           L YV MTRA   L +    + +   K  + T    + +   N      +    
Sbjct: 600 LCYVAMTRAKKHLTLTYCRSRTKMGKKVECTPSIFLEEMSENLPEEMSMNEEE 652


>gi|324995484|gb|EGC27396.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK678]
          Length = 762

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/589 (16%), Positives = 186/589 (31%), Gaps = 119/589 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFASSQEISLLDASANILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +  +    +L          ++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMLLDLRERLDDFTVTELVEAVLEKTGYAAALAAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            +++       + L +L   L +              +EV +MT+H AKGLE PVVFLV 
Sbjct: 516 FDESPDNPADETGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF      +                                              Y
Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           VG+TRA   L +   ++     K+N       + +   +    + +   
Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNHPTRFLREISSDLLDYQGLARP 650


>gi|312872971|ref|ZP_07733031.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091493|gb|EFQ49877.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners LEAF
           2062A-h1]
          Length = 779

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 132/804 (16%), Positives = 257/804 (31%), Gaps = 110/804 (13%)

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD KQSIY F  A+P   L++         +       I L  +FRS+ ++  +V+ +
Sbjct: 1   MVGDVKQSIYGFRQAQPHLFLQKYHQFSNEVQS-----ERIILSDNFRSSKNVTQIVNNI 55

Query: 278 FSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           F     EN  G++      +++ +      +GT   +    S  D Q    ++   +  D
Sbjct: 56  FDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKQSIADEDEEVNDLD 115

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391
            +            +   I  +   D    +     KR I+  DI +L R + +      
Sbjct: 116 EIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE----NL 161

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                  + K+ +  +D         +  +    + I + + D+  V +++SPL+ F+E 
Sbjct: 162 KLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEP 221

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLI 507
           +  KI      + + Y+ I  +      +     ++ I  +    + +      +    I
Sbjct: 222 EFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCKNFINELSHFRNFSIDHRISELICDI 280

Query: 508 LGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561
                  +       G +    L+         E + +  L + I+ +++        + 
Sbjct: 281 FQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQ 340

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             +     + +++MT+H +KGLE P+VFL+    +           I        G+ I 
Sbjct: 341 PLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLGLTIT 398

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-- 679
               +  + + S      K    EE  R+LYVG+TRA  +LI+             Q   
Sbjct: 399 TADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANEKIIPDFQNQL 458

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT----------------- 722
             ++ +     ++       L   +   +      S    E                   
Sbjct: 459 DAHNQLPFIDKSNAISPMSFLGPELFAHQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQP 518

Query: 723 ----------------------------PLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                                       P +   T        +I K    P   + +  
Sbjct: 519 SVQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNS 578

Query: 755 YILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809
            ++N +       ++  + L          G  +H LLQ              + I +  
Sbjct: 579 KLINSANKYLMPISDKPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLV 638

Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857
            +N          +L               A    S + Y E+  S            N 
Sbjct: 639 LQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFND 696

Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKD 913
               I++ G ID   I    I +F+YKT       +E    ++   +  QLS+Y   L +
Sbjct: 697 VNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNN 756

Query: 914 SYPNKSLVC-LLIYVSEPKVFIIP 936
              +K +    LI +S  K+  + 
Sbjct: 757 L-SDKKVKAKYLILLSINKIVKVD 779


>gi|291615299|ref|YP_003525456.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
 gi|291585411|gb|ADE13069.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
          Length = 722

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/653 (15%), Positives = 208/653 (31%), Gaps = 119/653 (18%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           ++ Q+     +++       ++          + A Y+   ++  V+DF +L++   +LL
Sbjct: 139 REMQNFISGSKEQGLRAHEVEAYDPYTRRKVEVFAEYDAQCQREGVVDFSELLLRCYELL 198

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +      +R    +   HIL+DE QDT+ +Q+  ++ L                LFAVG
Sbjct: 199 SRN---QPLREHYQERFKHILVDEFQDTNPLQYRWLKLLAGQ----------NNALFAVG 245

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +    R  Q          ++I+L  ++RS  +IL   + +   
Sbjct: 246 DDDQSIYAFRGANVGNMQELLRDFQVE--------NVIKLEQNYRSHGNILDAANALIQN 297

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             N  G +                     LW       D+    Q   + +  D      
Sbjct: 298 NRNRLGKN---------------------LW------TDADKGEQIRVYEAGTD------ 324

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  +   I  +              ++  ++ +L R    + ++           
Sbjct: 325 --VDEAAFLVEEIRQLNREG----------VRLSEMALLYRSNAQSRVLEHAL----VSA 368

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            +S          +   IK  +A  R + + +DD + + ++  P        I ++    
Sbjct: 369 GLSYRVYGGLRFFERQEIKHALAYLRLMENTDDDNALLRIINFPTRGIGARSIEQLQEAA 428

Query: 461 HE-TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
            +   T+++   +       K    +  I  L    Q     +    +L        + +
Sbjct: 429 KQYNTTLWDAAARAG----GKVTAFVGIIESLRSGTQNLPLPEIIEHVLQHSGLADHYKN 484

Query: 520 RFG------NEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
             G       E ++ L+E +        +N   SL   ++               + + +
Sbjct: 485 ETGAKKREAEERLENLNELITAATMFVHENEDDSLTAFLTHASLEAGE--HQAGDSEDAL 542

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MTVH AKGLE   VF+      +F H++                              
Sbjct: 543 HLMTVHAAKGLEFHTVFITGLEESLFPHQNSID--------------------------- 575

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                       +E  RL+YV +TRA  +L +    +     +++       + +     
Sbjct: 576 --------NGDLDEERRLMYVAITRARRRLYLTFAQSRMLHGQTHYGMASSFLRELPEEL 627

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                 +++             S  +        E+         +I +++F 
Sbjct: 628 LHWITPRVSARKTFHTSSFETNSYVNAFAATPALEKAPPAPSSVWRIGQRVFH 680


>gi|161723247|ref|YP_095868.2| DNA-dependent helicase II [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 721

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/580 (18%), Positives = 191/580 (32%), Gaps = 117/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+  + + V+DF +L++ T++LL+  +    I     +    IL+DE QDT+ I
Sbjct: 172 AIYKAYEDVCQTSGVIDFAELLLRTHELLRDNEE---ILAHYRERFQAILVDEFQDTNTI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             + AVGD+ QSIY + GA+ + + +            
Sbjct: 229 QYAWIRLLAGDHTA----------VLAVGDDDQSIYGWRGAKVENIQQFVHDF------- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +   II L  ++RSTA IL   + +        G                      +LW
Sbjct: 272 -KDTHIIRLEQNYRSTAMILNAANALILNNSTRMGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   +    ++    S F+ L +       AR +   I   +              
Sbjct: 310 -------TAGSEGEKILVYSAFNELDE-------ARFVTERIGMELNQG----------A 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A +I VL R    + ++            I+          D   IKD +A  R +++ 
Sbjct: 346 SADEIAVLYRSNAQSRVLEEAL----LRAGIAYRIYGGVRFFDRAEIKDTLAYLRLLVNP 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++  P     E  + ++    R E  +++   +           G       
Sbjct: 402 NDDTAFERVVNFPTRGIGEKTLDEVRQYARAEQCSLWGASKGILQSTGLGQRGSLALAKF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFISRFGNEVIDVLDEFLNFTLRN-- 539
           I  I +L  +       +  + ++          +         +D L E +N   +   
Sbjct: 462 IDLIEKLQVVVANKELDEQISDVIQHSGLYAHFSKIKGDKSESRVDNLQELINAAKQFRY 521

Query: 540 EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E +    L  + S L              +   V +MT+H AKGLE P+VFLV     +F
Sbjct: 522 EYDEEEELPLVNSFLAHASLESGELQADEHERSVHLMTLHAAKGLEFPIVFLVGMEEGIF 581

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +   +                                       EE  RL YVGMTRA
Sbjct: 582 PGRQSLEEPG----------------------------------RLEEERRLCYVGMTRA 607

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +L++          +         + +         ++
Sbjct: 608 MRKLVLSYAEVRRQYGREEYHRSSRFLREIPQQFLDEVRV 647


>gi|226365048|ref|YP_002782831.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4]
 gi|226243538|dbj|BAH53886.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4]
          Length = 827

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/643 (15%), Positives = 191/643 (29%), Gaps = 141/643 (21%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +     +    K       L   +  HY++  +    LDF+DLI  T  +L+       +
Sbjct: 179 VDPEQASADADKDPAELPRLIAKVYGHYQQRLRSANALDFDDLIGETVAMLQ---AFPQV 235

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS--PRTLFAVGDEKQSIY 227
                +   H+L+DE QDT+  Q+ ++R L      G++      P  L  VGD  QSIY
Sbjct: 236 AEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGSTADGEDADHRVAPAELCVVGDADQSIY 295

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA  + +   +R               I L  ++RST +IL+  + V S     +  
Sbjct: 296 AFRGATIRNIEEFERDYP--------DARTILLEQNYRSTQNILSAANSVISKNTGRREK 347

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW             +  +     +   +       A 
Sbjct: 348 R---------------------LW-------TDSGEGELITGYVADNEHDE-------AS 372

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I  ++ +            +  D+ V  R    +  +  +         +     
Sbjct: 373 FVASEIDKLVDSG---------DAKFGDVAVFYRTNNSSRALEEIF----IRLGVPYKVV 419

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                 +   ++D++A  R + +++D +S   +L +P     +     +         + 
Sbjct: 420 GGVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEQRGISF 479

Query: 467 YEYIQK--------FANCGISKFQHVIKYIHELIHIAQFCS------------PHDFFTL 506
            E ++                     ++ +  L  +    +              D    
Sbjct: 480 AEALRDGGEGRVRLLNTRSQKAIASFLELMDGLRVLMPPETTADDIVPDQLGDIGDVVEA 539

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--------------------EQNS 543
           +L     R +  +    +    +D L+E ++                          ++ 
Sbjct: 540 VLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARNAAGLVEPPEDGDVDARDG 599

Query: 544 YSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + LE+             +   V +MT+HTAKGLE PVVF+       F H 
Sbjct: 600 EPDPGSLAAFLERVSLVADSDQLPDNDEGVVTLMTLHTAKGLEFPVVFVTGWEDGQFPHM 659

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                       E  RL YVG+TRA  +
Sbjct: 660 RALGDPT----------------------------------ELSEERRLAYVGITRARQR 685

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           L + +    S   +  Q      + +   +    ++      +
Sbjct: 686 LYLTRAVMRSAWGQPIQNPESRFLQEIPSDLVHWRREDPGPRL 728


>gi|300114627|ref|YP_003761202.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
 gi|299540564|gb|ADJ28881.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
          Length = 1147

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 163/951 (17%), Positives = 310/951 (32%), Gaps = 110/951 (11%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
               S     +DLW  P  Q   +  ++ LS          + Q  +          R   
Sbjct: 258  APASPIQACRDLWKRPGTQAEALPHWLGLSQLLLTNGGEWRRQANKNIGFPAPSAARGQE 317

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
               F    K   +  +      +    L+  L   +     +     T   ++   A   
Sbjct: 318  EKQFL---KEQKRAFLDFLARLEGEEALRCALHDLRF----LPSASYTATQWQLMEALFQ 370

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            L     A  + A ++   +DF ++       L + +    +   +D +I H+L+DE QDT
Sbjct: 371  LLPLAVAQLQLAFQERGEVDFTEVAQRAVAALGEAEAPTDLALALDYQIRHLLMDEFQDT 430

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            SL Q+ ++  LT  +  G+      RTL  VGD  QSIY F  AE    L+  R      
Sbjct: 431  SLSQYILLERLTIGWEAGEG-----RTLLVVGDPMQSIYRFREAEVGLYLQAWRQ----- 480

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   + + L ++FRS   I+  V++ F                              
Sbjct: 481  GIGQLPLTPLTLSVNFRSQQGIVNWVNQSFRQI----------------------LPAAQ 518

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            ++    V    S       +  +       E  +   A R+ + I              +
Sbjct: 519  EIATGAVPYSQSHAFHPLLAAPAVQVHPFFEKDSLTEAERVVHLIQQ-----------TR 567

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            +      I +LVR R     I  L R       +     +   L     ++DL+AL + +
Sbjct: 568  QATPNSTIAILVRSRGHLAGIVPLLRE----AGLGFRALEIEPLGSRPVVQDLLALTKAL 623

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKI-----CTQRHETETVYEYIQKFANCGISKFQH 483
                D LS++ +L++P    +  D++ +          +       IQ+ +  G  +   
Sbjct: 624  FHLGDRLSWLTVLRAPWCGLTLADLYVLAGEDKQAAIWDRIQEDACIQRLSEEGRERLGR 683

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLNFTLRNEQN 542
            + +   + +   +  SP      +  A  G           E    LD      + +E  
Sbjct: 684  LRQVFAKALEERRRTSPRRQVEGVWLALGGPACVADSIALEEASVYLDLLEGEAVADEIL 743

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
             + +L+E ++ L                 ++IMT+H AKGLE   V +   G       H
Sbjct: 744  DFRALEESVARLFA------PPDREADETLQIMTIHRAKGLEFDTVIVPGLGCPPRHESH 797

Query: 603  IKKMH-------IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
               +                  +        S+++I   + +  ++  + E  RLLYV +
Sbjct: 798  QLLLWAERPTAHYSAGNKGALLLAPITGVGGSQDSIYQHIKRLHEEKGEFENGRLLYVAV 857

Query: 656  TRASDQLIICKHSNTSNE-KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            TRA  +L +       +  KK+   +   ++   +        +K             E 
Sbjct: 858  TRAKHRLHLLGQVELDDTGKKTKMPSKRSLLASLW------PAVKEKFEAAALLQRETEI 911

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                 +         I +L  + + P  +     +  + P +            ++E   
Sbjct: 912  REEGTDLADSPISGFISRLSTQWQCPAPMAGVRVDIGDLPEV-------APALDSIEFDW 964

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRK--------NFITSYCTKNAKLWPAKE--YKNL 824
            +     + G ++H+ LQ+I                   +     +   +    E   +  
Sbjct: 965  AGETARHIGTVVHRYLQIIAEEGPEHWGLTRIMALAPALRQALRQQGVVADEMENAMERA 1024

Query: 825  LLSITRLLENPMMTTAMS---CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI-FI 880
               + + LENP     ++     + +E ++SG +N      II   ID+  I +  + +I
Sbjct: 1025 REVLGQTLENPRGRWILASNHRQARNEYALSGVLN----GRIIRAVIDRTFIDEAGVRWI 1080

Query: 881  FEYKTHHHVPQEIEHI----PYTHIAQLSIYEKILKDSYPN-KSLVCLLIY 926
             +YKT  H   + E         + AQL  Y  ++    P  + +   L Y
Sbjct: 1081 VDYKTGTHEGGDREEFLNREQERYHAQLERYAALMALKAPETEKIRLGLYY 1131


>gi|322385749|ref|ZP_08059393.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC
           51100]
 gi|321270487|gb|EFX53403.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC
           51100]
          Length = 762

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/592 (16%), Positives = 187/592 (31%), Gaps = 123/592 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKANIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ E                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFAASQEISLLEASANIMLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I +L       S  +   L+L          ++   E    I+ ++EFL+ T  
Sbjct: 456 YEFANLILDLRDRLDDYSVTELVELVLKKTGYAAALAAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQN--------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            ++N            L   +++L     T      ++   V +MT+H AKGLE PVVFL
Sbjct: 516 FDENPDNPADETGLDKLSRFLNDLALIADTDDGDMESSE--VTLMTLHAAKGLEFPVVFL 573

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V     VF      +                                             
Sbjct: 574 VGMEENVFPLSRASEDEDELEEERRL---------------------------------- 599

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            YVG+TRA   L +   ++     ++N       + +   +    + +    
Sbjct: 600 AYVGITRAEKILYLTNANSRLLYGRTNYNQPTRFLREISSDLLNYQGLARPA 651


>gi|324990953|gb|EGC22888.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK353]
          Length = 762

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/590 (16%), Positives = 186/590 (31%), Gaps = 119/590 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVDKIRDFASSQEISLLDASANILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +  +    +L          ++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMLLDLRERLDDYTVTELVEAVLEKTGYAAALAAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            +++       S L +L   L +              +EV +MT+H AKGLE PVVFLV 
Sbjct: 516 FDESPDNPADESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF      +                                              Y
Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           VG+TRA   L +   ++     K+N       + +   +    + +    
Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNQPTRFLREISSDLLDYQGLARPA 651


>gi|118587527|ref|ZP_01544951.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163]
 gi|118431978|gb|EAV38720.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163]
          Length = 748

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/608 (17%), Positives = 203/608 (33%), Gaps = 119/608 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    YE    ++  +DF+DLI+ T  L K+   +  + +    +  +I +DE QD
Sbjct: 168 EAVSESYDLYERRLTQSQSMDFDDLIMRTIQLFKQ---APDVLHYYQHKFKYIHVDEYQD 224

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q++++  L    F         R L  VGD  QSIY + GA+   +L  ++     
Sbjct: 225 TNGAQYKLVEMLAAGDF-------GSRNLAVVGDSDQSIYGWRGADMNNILNFEKDFP-- 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RST  IL   ++V       +  +                   
Sbjct: 276 ------GAKTVLLEQNYRSTKHILMAANQVIQNNIERKPKN------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +  +     +           S S  A  +   I   +          
Sbjct: 311 --LW-------TNNQDGNLIHYYRA-------QSESDEAHYVLTKIQEGVKKGRSL---- 350

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  +L R    + +   +    K    I           +   I+D++A  + 
Sbjct: 351 ------NDFAILFRTNAQSRIFEQVFNSNK----IQYTMVGGTRFFERKEIQDIVAYLQL 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY------EYIQKFANCGISK 480
             + ++D +F  ++  P  +     I K+      +  ++       +   + +    S 
Sbjct: 401 TANLDNDTAFERIVNEPKRSIGSSSIEKLRSFAAKKGLSLMKSIVVLDDESRLSKKAQSN 460

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
           F+   + I      + F S  +    I      R+Q++ +   E    ++ LDEFL+ T 
Sbjct: 461 FRKFAQMIQVFSDQSHFLSLTELANEIFDQTGIREQYVKKDDLESQSRVENLDEFLSQTK 520

Query: 538 RNEQNSYSSLQE----LISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVD 592
           + +Q+      E    L+  L Q            +  +V +MTVH AKGLE PVVF+V 
Sbjct: 521 QFDQDYDEEASETNNPLVDFLGQTALVSDLDSYDESAGQVTLMTVHAAKGLEFPVVFIVG 580

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F                                        +++   EE  RL Y
Sbjct: 581 LEEGIFPS----------------------------------ARAMMERDGLEEERRLAY 606

Query: 653 VGMTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           V +TRA ++L +            + +    + D + DS  + E     +     + D  
Sbjct: 607 VAITRAQEELYLTNAFGRLLYGRAQSNEPSMFLDEIDDSLLDKENPSSSRTQTLSDYDRP 666

Query: 710 IAYEWSTH 717
           + ++  + 
Sbjct: 667 MPFDRKSE 674


>gi|89894431|ref|YP_517918.1| hypothetical protein DSY1685 [Desulfitobacterium hafniense Y51]
 gi|122483028|sp|Q24WW8|ADDA_DESHY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|89333879|dbj|BAE83474.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1392

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 142/849 (16%), Positives = 274/849 (32%), Gaps = 107/849 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
              P+     S +  ++    E G  + ++ A     A+           L    + ++ +
Sbjct: 250  YLPVLEDDQSRL-GFLREMAEKGTWSDIETAFK-SAAAFPGLPRGSKKNLPDSLIDEENS 307

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
             +    +++   ++    E++K +              KM +       + ++    Y++
Sbjct: 308  KRLREESKKARDEAKKKLEEIKNTVFSVPLTDQLPFLNKMGELVGTLAQVTQHFAREYQK 367

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            AK++   +DF DL      LL K      I  K+      +L+DE QD + +Q  +++ +
Sbjct: 368  AKRQRNCVDFSDLEHYALQLLAKDKQPTEIALKLQAYYAEVLVDEYQDINPVQERILQLV 427

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS-II 258
            +               LF VGD KQSIY F  A+P   LR+           G   + +I
Sbjct: 428  SR-------QEEGKANLFMVGDVKQSIYRFRMADPGLFLRKYGEFPHYQEGGGAAPNLVI 480

Query: 259  ELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQV------GTVQL 310
            +L  +FRS  +++  ++ +F     E A  +  D    +R  +  +         G +++
Sbjct: 481  DLNQNFRSRPEVIQGINYLFYQIMTEGAGEIIYDEQAALRPGAKFVSDGELRTAEGPIEV 540

Query: 311  W--------------------------EQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                                              + + N + ES      SL +  +A I
Sbjct: 541  HLFDPKAIDLSLGQKRGAEDAATGADSPAKGEGEEFEQNREPESGDDES-SLEEAETARI 599

Query: 345  LARRIAYTISNMIGTD----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
             AR +A  I  M+            G  R +Q  DI++L+R       +  +        
Sbjct: 600  EARLVAARIQKMVLEREFQIHDKELGDYRPVQYADIVILMRS---LASVASVYAEEFQKA 656

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC--- 457
             I V             +  +++L + I +   D+ F  +L+SPL   +  ++ K+    
Sbjct: 657  GIPVYAETNSGYFGTNEVDTVLSLLKIIDNPRLDIPFAAVLRSPLVGMNGTELGKLRSLL 716

Query: 458  ------------------TQRHETETVYEYIQKFANCGISKFQ----------------- 482
                               ++ E    Y  I++                           
Sbjct: 717  PQGDFYETLVLTFWAGDAHRQEEGHEFYSEIREILGKHWESLPQLEVKVRHILETSPEIK 776

Query: 483  ----HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTL 537
                     + E  H ++  S  D    +               G +    L    +   
Sbjct: 777  EKVDAFFPKLQEWRHRSRRTSLADLLWHLYEDTGYLAYVGTLPAGAQRQANLRVLYDRAC 836

Query: 538  RNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            R E  +Y  L   +  LE+                  N VR +TVH++KGLE PVVF+  
Sbjct: 837  RYEATNYRGLFRFLRFLEKFQSQGKDLGNASIVGEKENVVRFITVHSSKGLEFPVVFIAG 896

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
             G +  +     ++ +   L     +     Q +  + I   + + L +    E  R+LY
Sbjct: 897  LGKKFNTRSLSSQLLLHSHLGVGIPLIDIENQVRYPSVIQYAVKERLWQEALAEELRILY 956

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V +TR  ++L +  H +   E  +  R+           D      +L  +    +W+  
Sbjct: 957  VALTRGKERLFLFGHQHKLAEAINKWRSLALSC-----PDTAFPDGQLRGAKTYLDWLGP 1011

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                H  +   L    T  +L D     K +                S  +       + 
Sbjct: 1012 ALVRHPEDLFKLGSFPTASELPDSSSQWKVILHDQIAGKGPVQEATSSQDEI--ILPDQE 1069

Query: 773  LLSDNQTFN 781
             L + +   
Sbjct: 1070 TLGEREASE 1078



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 98/303 (32%), Gaps = 22/303 (7%)

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               +    E K+++ T       +            T ++ ++ +    W   +PE    
Sbjct: 1089 SGKTEIPGETKNSEETKTSEDKKNLEAQTPETADLDTKNLQEEVFRQLNWQYPYPEGVNQ 1148

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
              + ++ +L   Q +            +     +  +  +  +        +     RG 
Sbjct: 1149 SAKTSVSELK-RQSLWYMDNEYSSPSSSSSSSPSALSAPSFLRPQFIVSRKELTPAERGT 1207

Query: 785  IIHKLLQVIF-----TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-------SITRLL 832
             +H  +Q +         E   +    S   ++      +E  +           +  LL
Sbjct: 1208 AVHAAIQHLPLALWRDTWEELAQEVRESMLQEHIDSLIRREILSAEQGGAVSVSQLKNLL 1267

Query: 833  ENPMMTTAM-SCDSYSEVSV--SGKINCPKKDIIISGRIDQISIS--QQNIFIFEYKTH- 886
            ++        + +   EV    S ++   K+ +++ G ID + +S  +    + ++KT  
Sbjct: 1268 DSTSGKRLWEAEEVRREVPFTLSLRLRAQKEPVLVQGIIDAVLLSHQEHEAQVMDFKTDN 1327

Query: 887  -HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFIIPQNKLNKAF 944
               VP     +   +  QL +Y   ++       +   +IY  S  + F++ +  +  A 
Sbjct: 1328 LAGVPDPELVLTQRYGLQLGLYALAVERLLKV-PVRECIIYATSLNREFVMQREAVQAAL 1386

Query: 945  AEI 947
              +
Sbjct: 1387 ESV 1389


>gi|150024958|ref|YP_001295784.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771499|emb|CAL42968.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum
           JIP02/86]
          Length = 777

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/636 (16%), Positives = 201/636 (31%), Gaps = 122/636 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y E   K   +DF+DL++ TN+LL +      +  K      +IL+DE QDT+
Sbjct: 175 LGEIYQQYVERCFKAGAMDFDDLLLKTNELLTRFPE---VLLKYQDRFRYILVDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++R+L++ F          + +  VGD+ QSIY F GA    +L  ++  +    
Sbjct: 232 HSQYLIVRALSDRF----------QNICVVGDDAQSIYGFRGANINNILNFQKDYEN--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +  L  ++RS+ +I+   + V    +                           
Sbjct: 279 -----VKMFRLEQNYRSSKNIVEAANSVIDKNKTKLDKV--------------------- 312

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W         +              + +  + +   R +A  I         ++     
Sbjct: 313 VWTANDFGQKIK--------------VNRSVTDNDEGRFVAGEI---------WTQKMTN 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +      +L R    +  +    R       I               IKD++   R ++
Sbjct: 350 QMTNGQFAILYRTNAQSRAMEDALR----KRDIPYRIYGGLSFYQRKEIKDVLCYLRLVI 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ-------KFANCGISKF 481
           + +D+ + + ++  P     +  I K+    +    +++E +Q       K  +   +K 
Sbjct: 406 NPKDEEALIRVINYPARGIGDTTIEKLTIAANHYKRSIFEVMQVIDKIDLKLNSGTKAKL 465

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
           Q  +  I     I +          +       Q+       E    I+ ++E LN    
Sbjct: 466 QDFVTMIKSFQAINETQDAFYLADHVAKKTGYIQELKKDGTPEGIARIENIEELLNGIKD 525

Query: 539 NEQNSYS------SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                        +L E + ++     T     +++ + V +MT+H AKGLE P VF+V 
Sbjct: 526 FTDGQVEVDGARGALSEFLEDVALA--TDLDKDTSDDDRVALMTIHLAKGLEFPTVFVVG 583

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F                                     +    +S  EE  RL Y
Sbjct: 584 MEEDLFPS----------------------------------AMSMSTRSELEEERRLFY 609

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V +TRA  Q  +    +     K         + +             TN   K +    
Sbjct: 610 VALTRAEHQAYLTYAQSRYRWGKLTDSEPSRFIEEINGEYLEYITPPETNYRYKPQIDHD 669

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
            +         L +  T            KL + I+
Sbjct: 670 IFGDVDKSKLRLAKPITGTPPKYIANNEPKLDTNIR 705


>gi|325679430|ref|ZP_08159015.1| putative ATP-dependent DNA helicase PcrA [Ruminococcus albus 8]
 gi|324109027|gb|EGC03258.1| putative ATP-dependent DNA helicase PcrA [Ruminococcus albus 8]
          Length = 782

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/615 (16%), Positives = 192/615 (31%), Gaps = 113/615 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y+   + +  +DF+D+I +T DL +K+     +         +I++DE QDT+ 
Sbjct: 222 ARIYKRYQAELRASNAMDFDDIICHTVDLFEKQPD---VLDHYQNLYKYIMVDEYQDTNK 278

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+ ++  L++ +            +  VGD+ QSIY F GA  + +L  +     R  +
Sbjct: 279 VQFRLVSLLSQKY----------GNICVVGDDDQSIYRFRGATIENILNFEEEFGCRPED 328

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST +ILT  +K+ S     +G +                     L
Sbjct: 329 ------VIKLEQNYRSTQNILTCANKLISHNVGRKGKN---------------------L 361

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + ++           +       A  IA  I+                
Sbjct: 362 W-------TDSGDGEKVIVHKSMTEREE-------ASYIAKIITENTEKGR--------- 398

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +  D  +L R    +  +            I           D   +KD++A    I +
Sbjct: 399 -RYGDHAILYRMNAQSNALEQAM----IKASIPYKIFGGLKFYDRKEVKDILAYLEVINN 453

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHV 484
             D      ++  P     +  +  I     +      YI + +   +            
Sbjct: 454 HSDMFRLRRIINEPKRGIGDATVRVIDQIVSDLGEDAIYIMEHSPEYVPLAKKSKALTEF 513

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRN-EQ 541
              I +L  +A   +  +    ++         + +   G   ++ ++E  +   +  E+
Sbjct: 514 AFMIDDLTDLADISTLPELLDAVVDKTGYGSYLLQQGLEGEARLENIEELKSTMAKYEEE 573

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               SL+  + E+  Y          N + V +MT+H AKGLE PVVF+      VF   
Sbjct: 574 AEEPSLEGFLEEVALYTDIDT--LDENGDYVALMTMHAAKGLEFPVVFVAGLEDNVFPSS 631

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                      EE  RL YV +TRA ++
Sbjct: 632 ----------------------------------RSMESDIEIEEERRLAYVALTRAKEE 657

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +             +      + +    +   +  KL+                    
Sbjct: 658 LHLVYAGERMIFGNVQRNRESMFLRELPKENIEEQVPKLSEGAAPTANPNLSLGKQIAMY 717

Query: 722 TPLEREETIKQLMDE 736
              +R ET       
Sbjct: 718 NAAKRSETSASSESY 732


>gi|95930575|ref|ZP_01313310.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
 gi|95133410|gb|EAT15074.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
          Length = 747

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/641 (16%), Positives = 196/641 (30%), Gaps = 116/641 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +  HY++  ++   LDF DL++    L  + +    IR +      H+L+DE QD
Sbjct: 164 QVIADVYRHYQQRLQQANALDFGDLLLMCVKLFDEHEE---IRQRYAGRFLHLLVDEFQD 220

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+++Q+ +++ L  +             L  VGD+ QSIY + GAE   +L  +R     
Sbjct: 221 TNMVQYRLVQQLASE----------HGNLCVVGDDDQSIYRWRGAEVGNILGFERDYP-- 268

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I L  ++RST  IL     V +     +G +                   
Sbjct: 269 ------GCTTIRLEQNYRSTTTILDAAGAVVANNVGRKGKT------------------- 303

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +  +  +  D L +       AR +   +  +           
Sbjct: 304 --LW-------TENPDGEAITLEALPDDLEE-------ARYVVDQLKALQQGGR------ 341

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 +DI +L R    + ++           +I  V          + +KD++A  R 
Sbjct: 342 ----HLRDIAMLYRTNAQSRVLEEAL----VRERIPYVMFGGMRFFARMEVKDVLAYLRV 393

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK------F 481
           + +  D +S   ++  P        + KI T   + +  +   +     G+ K       
Sbjct: 394 LTNPADTISCQRIINVPTRGIGATTVAKIATLEQQAQGFFPACRLAVEQGVLKGAAAKKV 453

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              +  + +     +          ++      Q   S    E  D LD  ++  L   +
Sbjct: 454 AAFVAMMEDFASRLERLPYPQLAAELIEETGYAQMLKSENTQEARDRLDN-IDQLLAGME 512

Query: 542 NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                   L   LEQ           ++ + V +MT+H AKGLE PVVF+      +F  
Sbjct: 513 EHRDEDTTLQDYLEQVALVTDLDAYDSSLDRVTLMTLHAAKGLEFPVVFMTGMEDGIFP- 571

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                +      EE  RL YVGMTRA +
Sbjct: 572 ---------------------------------AARSNDGGEQLEEERRLCYVGMTRAME 598

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK----DEWIAYEWST 716
           +L +                    V +           K  ++ +K      +       
Sbjct: 599 KLYLTHARRRRVYGSYQFNPPSRFVGEIPEGLLADVAKKPLHATSKHNLASLFDQLPMQA 658

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
              E +                 P     P     +    +
Sbjct: 659 PESETSSAPASTPAADSASVPDQPVIEVEPAAPVDDGTLRI 699


>gi|317495616|ref|ZP_07953983.1| UvrD/REP helicase [Gemella moribillum M424]
 gi|316914235|gb|EFV35714.1| UvrD/REP helicase [Gemella moribillum M424]
          Length = 1214

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 167/1034 (16%), Positives = 344/1034 (33%), Gaps = 155/1034 (14%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
            +  D        + D ++ V L+ +    T  K A  ++     +          S  L 
Sbjct: 221  LLHDFLLNNEIVIDDFSELVELATKESLNTARKFAIHVKNFLVKKDNGNIVERYLSKSLL 280

Query: 76   QKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL---- 129
                 +K      +     S  + E+ +   +    + +  N      +T     +    
Sbjct: 281  DDNKKEKIRKYFIENDVNISTSILEQGQCLDNIINSLDNELNKNDNIYNTTLLNNIFNDL 340

Query: 130  ------------AKYLNAHYE-----------EAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                            +  Y+           + K++   LDF DL       L K +  
Sbjct: 341  NNYYSMFQTAKKLDTFSTAYQTTLLELNNEFLKRKRELNFLDFSDLNHLAIKALTKIENG 400

Query: 167  AWIR----YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
              +              I +DE QD + +Q  ++  +  +              F VGD 
Sbjct: 401  KIVLSEAAEYYRNHFLEIYVDEYQDNNNLQEYILNLIKGE----------NTKFFRVGDV 450

Query: 223  KQSIYSFHGAEPKRVLREKRINQK-----------RATNAGQKFSIIELPLSFRSTADIL 271
            KQ+IY F G+ P     +    ++            A +   +   + L  +FRS  +IL
Sbjct: 451  KQAIYGFRGSNPDLFEEKYNSYKQLDIKNYDANIDYAISDEAEGVCVVLKENFRSDENIL 510

Query: 272  TVVDKVFSIPEN--AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
               + VF+        G+S D  + + + S +  Q   V +          Q    + ++
Sbjct: 511  KSSNYVFNRLMGDKNAGVSYDEQSALYYPSVKEKQ---VNVIPT-------QLINGKINY 560

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
             +    + ++         IAY I N +                 D  +LVR        
Sbjct: 561  FTKEKLVDKKEYRVQSIENIAYEILNGVKNGK----------NYSDYAILVRNSAKMTTY 610

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
              +     + Y I +   ++   T       L  L RF+ +   D S + +L S +F++S
Sbjct: 611  KQIF----SKYNIPLFFKEKVGFTTSNCFNILYNLFRFLDNTTRDASLIALLHSEIFDYS 666

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
             D++  +    ++ +T++E   K A     K ++ +  +++ +  +   S  D    I+ 
Sbjct: 667  NDELLNL--SLNKGKTLFE---KLALSNSVKSKNTVNLLNKWLDFSLNNSLSDILERIVS 721

Query: 510  AKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--HS 566
                    ++   N+   D  + F++     E      L   +  L+             
Sbjct: 722  DIDFVNYLVTIDINDDEVDYYENFIDLVQEYENTDNK-LSGFVQYLKNIKDDEVFETKKR 780

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-------PGIP 619
              +N V + T+H +KGLE   VF+ D  +      +  ++    +               
Sbjct: 781  TPNNSVTLSTIHISKGLEYKEVFVADLDTSFNKKGYGGEVLFTENFGFSINIDNFIQKYN 840

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS--NEKKSN 677
            I +       ++       +K   +EE  R LYV +TRA   L +   +     NEK ++
Sbjct: 841  ILLQDKDYFESLYKLNSILIKLREREEEVRNLYVALTRAEKILYLVSPNGIELQNEKAAD 900

Query: 678  QRTWYDMVYDSFH-----NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
            +  +  ++ +        N        L  +  +     Y  +    E   ++ +  +  
Sbjct: 901  KSIYQALLEEDNFEKILNNVLSNYGEFLFENEREANITEYSLTEEKDEQKYVDIDFDLSD 960

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG---------------------KTNLE 771
               + K+  +     +  I     + P+                           K +  
Sbjct: 961  FHKKFKVKHQELDNSEKSIEVQNKIFPAKTSYSSLKKINNNYEIHDSKTKETNYLKLSTL 1020

Query: 772  SLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCT---KNAKLWPAKEYKNLLLS 827
            +  S N+   +G +IHKL +  I  +  + +   + SY     K   L    + K +L  
Sbjct: 1021 NKTSANKAILKGNVIHKLFERIINDIRNNIKIEDVNSYLDGLIKTGNLLTDIKEKRILTE 1080

Query: 828  -----ITRLLENPMMTTAMSCD----------SYSEVSVS--------GKINCPKKDIII 864
                 I   ++N  ++  ++ D            +EV+ +           +  + ++I+
Sbjct: 1081 DDYNLIDNDIDNERISNFIANDFMDKIKVAQNCQAEVTFTTMQKASELYNDSMSESEVIL 1140

Query: 865  SGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVC 922
             G +D +    + N FI +YKT + V ++ E  +   H  QL IY+  ++D Y  K++  
Sbjct: 1141 QGIVDLLVREDENNAFIVDYKTDNVVGKDAEKILIERHKEQLKIYKDAVEDYYNLKNVKT 1200

Query: 923  LLI-YVSEPKVFII 935
             +  Y    K+  +
Sbjct: 1201 YIYSYT-LSKLIEV 1213


>gi|297192605|ref|ZP_06910003.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151430|gb|EFH31159.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 811

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 121/719 (16%), Positives = 225/719 (31%), Gaps = 134/719 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 125 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 179

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+S         P+K    +  + K  +LK +L        +          F+ T   
Sbjct: 180 RLMSLVCRDLDLDPKK-FPPKSFSAKISNLKNEL------IDEETFADQAVDGFEKT--- 229

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   ++   LDF+D+I+ T  LL+       +     +   H+L+DE Q
Sbjct: 230 ---LAEAYRMYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYQRRFRHVLVDEYQ 283

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L    +        P  L  VGD  QSIY+F GA  + +L+ +     
Sbjct: 284 DTNHAQYTLVRELVGKGYE----DLEPAELCVVGDADQSIYAFRGATIRNILQFEEDYP- 338

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    + I L  ++RST  IL+  + V    E+ +  +                  
Sbjct: 339 -------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------------ 373

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW        +     Q +         +       A+ +A  I  +          
Sbjct: 374 ---LW-------TNAGAGAQITGYVADTEHDE-------AQFVADEIDRLTDAGE----- 411

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +A D+ V  R    + +   +         +           +   ++D++A  R
Sbjct: 412 ----AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 463

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK--FANCGISKFQH 483
            + + ED++    +L  P     +     I      E  T  + +++   A    ++  +
Sbjct: 464 VLANPEDNVPLRRILNVPKRGIGDRAEAMIDALALREKITFPQALRRVDEAYGMAARSAN 523

Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
            +K  + L+   +        P      +L       +  +    +    I+ L E    
Sbjct: 524 AVKRFNVLMEELRTIVDSGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 583

Query: 536 TLRNEQ-----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            L  EQ         +L E + +  L      I          + +MT+HTAKGLE PVV
Sbjct: 584 ALEFEQARGEEEGTGTLAEFLEQVALVADSDQIPDEDEEGTGVITLMTLHTAKGLEFPVV 643

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FL      VF H                                       +    EE  
Sbjct: 644 FLTGMEDGVFPHMRALG----------------------------------QTKELEEER 669

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           RL YVG+TRA ++L + + S  S   + +       + +        K+     +    
Sbjct: 670 RLAYVGITRARERLYLTRSSMRSAWGQPSYNPPSRFLEEIPGQHLTWKRTGPMAAPAGP 728


>gi|224539562|ref|ZP_03680101.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518843|gb|EEF87948.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 667

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/603 (16%), Positives = 191/603 (31%), Gaps = 122/603 (20%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y +  ++   +DF+DL+  T  L +       +  +  ++  +IL+D
Sbjct: 170 AAKMPAIRDIYHRYWDRCRQADAMDFDDLLFYTFILFRDHPE---VLARYQEQFRYILVD 226

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  L +D           + +  VGD+ QSIYSF GA+   +L   ++
Sbjct: 227 EYQDTNYAQHSIVLQLAKD----------HQHVCVVGDDAQSIYSFRGADIDNILYFTKV 276

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E        S            
Sbjct: 277 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKEVFS------------ 316

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +   I+ +  ++   
Sbjct: 317 ---------------EKEKGEAIGVFQAYSDVEEGDI--------VVNKIAELRRSEH-- 351

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       +               IKD +A
Sbjct: 352 -------YAYSDFAILYRTNAQSRVFEEAMR----KRGMPYRIYGGLSFYQRKEIKDAIA 400

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI T       +++  + +       F  
Sbjct: 401 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIITAATENNISLWAVLCEPLTYGLNFNK 460

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              SK Q     I   I      + ++  T I+               E     + ++E 
Sbjct: 461 GTHSKLQIFRDLIGGFIEGTVEKNAYEIGTEIIRQSGIINDVCQDNSPENLSRKENIEEL 520

Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N           E N   SL + +SE+         + + +  ++ +MTVH+AKGLE  
Sbjct: 521 VNGMSDFCALRMEEGNLNISLTDFLSEVSLLTDQD--SDNGDDEKITLMTVHSAKGLEFR 578

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 579 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 604

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   +          K    +    + D      R+ +     S   
Sbjct: 605 ERRLFYVAITRAEEHCFLSYARTRFRYGKMEFGSPSRFLKDIDIRFLRLPQDAGIGSKID 664

Query: 707 DEW 709
           +E 
Sbjct: 665 EEA 667


>gi|157164973|ref|YP_001467057.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Campylobacter
           concisus 13826]
 gi|157101490|gb|EAT97790.2| ATP-dependent DNA helicase PcrA [Campylobacter concisus 13826]
          Length = 689

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/546 (19%), Positives = 187/546 (34%), Gaps = 124/546 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   YE+  K N ++DF+DL+  T  +L + +    +  +I     +I++DE QDT+
Sbjct: 172 AAQIYEKYEDYLKANNLVDFDDLLGLTYKILDENED---LAREISNRYKYIMVDEYQDTN 228

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+++++ L                +  VGD+ QSIY + GA+   +L  K        
Sbjct: 229 DLQYKLLKKLCLC----------HENICVVGDDDQSIYGWRGAKIDNILNFKDQF----- 273

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               +  II L  ++RS+  IL   +++     N  G     T          G+   V 
Sbjct: 274 ---SEVKIIRLEKNYRSSEAILKAANELIDHNRNRLGKKLVGT---------KGEGEAVN 321

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L                           +    ++ A +IA  I  ++            
Sbjct: 322 LI--------------------------ESFDENLEAGKIAKNIKELLSKG--------- 346

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +QAKDI +L R    +  +        N  +I+          +   IKD+++  R I 
Sbjct: 347 -VQAKDIAILYRINALSRSLEDGL----NKEQIAYKMVGGVKFYERAEIKDIISYLRLIN 401

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-ETVYEY-------IQKFANCGISKF 481
           +  DD S   ++  P     +  + K+     E   +++E         + F+    S  
Sbjct: 402 NPNDDFSIRRIINRPKRGLGKVSLDKLEKMAFEGKISIFEAISNISDNDEAFSKKVKSAL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNE 540
                 + EL       S  D           ++ + S   G E    +DEF        
Sbjct: 462 LEFANNLKELQE---SSSVFDLIDKFEAKFGVKKYYESLPDGAERAANIDEFYAVLKDQI 518

Query: 541 QNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + + S  L+E ++E+         +       + IM+VH +KGLE   +F++      F 
Sbjct: 519 KQNPSFDLEEFLNEITLTSEQDGISDE----AISIMSVHASKGLEFEHLFVIGLEEGFFP 574

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                     S  EE  RL YV +TRA 
Sbjct: 575 -------------------------------------LIGDGSDIEEERRLAYVAITRAK 597

Query: 660 DQLIIC 665
             L + 
Sbjct: 598 KTLSLS 603


>gi|239815308|ref|YP_002944218.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239801885|gb|ACS18952.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 1087

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 144/918 (15%), Positives = 302/918 (32%), Gaps = 88/918 (9%)

Query: 25   YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
                       +      N T  K A  +     T          +   L + F      
Sbjct: 250  EQARRRWLDRAAALGREANKTPQKAADAVIDVFGTGEPPRESLAAALAHLRKNFFVATED 309

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
               +  +K P  +E  +         + +   +   +       L   L A + E K+ +
Sbjct: 310  RLNKNLQKYPAAQEA-EAELQTLCAAQAQHAAWLYQQRMTRLTRL---LIAAFAEVKRAH 365

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
              +D  D+      LL +  +S W++ ++D  I H+LIDE QDT+ +QW+   +L     
Sbjct: 366  GWVDMNDVEQAAQLLLGQSALSGWVQERLDARIAHLLIDEFQDTNPLQWQ---ALYGWLS 422

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                       +F VGD KQSIY F  AEP+  +       K+    G    ++    + 
Sbjct: 423  AYTGAGGKAPRVFIVGDPKQSIYRFRRAEPQVFIAA-----KKFVREGLGGELLNCDHTH 477

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            R+   ++ +V++     ++A            H + R  Q   ++L        D+    
Sbjct: 478  RNARAVVGLVNQAMLAAQDAGEF----DGYRAHTTERNDQGDLLKLPPIDRGALDTTAEA 533

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                           +   +   ++              +         + I+VL R+R 
Sbjct: 534  APADDGMLHWRDSLVTPRVLPEEQLLQ--KECEQAARWVAQRIADGTPPRQIMVLARRRN 591

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                +    R       I V   ++  L D   ++D++AL   ++S   DLS    LKSP
Sbjct: 592  RLSAMQDALR----QRHIPVQQPEKNELHDAPEVQDVVALIDALVSPAHDLSLARGLKSP 647

Query: 445  LFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            LF   +D + ++   QR +  + +  + +      ++       + +         PHD 
Sbjct: 648  LFGIGDDALVQLALRQREQPSSSWFALIQKGEGLPAELVAAGARLKQWQRWLAALPPHDA 707

Query: 504  FTLILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             + I        +F +          +  L   L  +L  E   +++   L+  L     
Sbjct: 708  LSAIFHDGDVLARFGAAMPSAMRQSALANLRGLLAASLEIEGARFATPYALVRALRAGG- 766

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             ++    A  + V+++TVH AKGLE+  V ++D  +     + +  +      +  P   
Sbjct: 767  -VRAPSVAVPDAVQLLTVHGAKGLEADTVLMLDCDAPPPRAQTMGVLVEWKGSDSAPTRF 825

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
            +++   K+     + L++  +++   E    LYV  TRA ++L++          ++N+ 
Sbjct: 826  VFLASEKTPPGCAATLLEEEQRARHREELNGLYVATTRARERLVLSSVQPA----RANEG 881

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
            +W+  +       E  + +                                         
Sbjct: 882  SWWSRLESMCEPVEADEPLLALPVETGGG------------------------------- 910

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                       + +  +L P+  ++       S   D +    G  +H+LL+    LP  
Sbjct: 911  --------SFSMKKMPVLAPAAKESPATRKAASATVDARAAAFGQAMHRLLEW--ALPGE 960

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
                       +   L   +     +  +   +       A              +    
Sbjct: 961  ALPPAHVRAAAREFMLDAQQARGAAV--LAERIRAGAGAWAWDERMIDWHGNEVTLVHEG 1018

Query: 860  KDIIISGRIDQISISQ--QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
            + +    RID++   +     +I +YK+     ++ E I      Q+  Y   ++ +YP 
Sbjct: 1019 ETL----RIDRLVRERASGAWWILDYKSAARPERDAELIA-----QMQRYRAAVQHAYPG 1069

Query: 918  KSLVCLLIYVSEPKVFII 935
              +    +   + ++  +
Sbjct: 1070 ALVRAAFL-TGQGELVTL 1086


>gi|188585469|ref|YP_001917014.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350156|gb|ACB84426.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 1161

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 158/1002 (15%), Positives = 324/1002 (32%), Gaps = 122/1002 (12%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
              EL  ++L  L     +++          G      KA+           E    LLS 
Sbjct: 198  DLELALQELKELIDKAKANLPDKEPPKGYDGLQRATLKAKRYLSYFDMNRDERIVELLSQ 257

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
            F       P+  +        + +L+++  +  +E                    +    
Sbjct: 258  F-----EKPKITLNRWPEKDIAYELRDEANRLAEEI---IQPIMEEWRRYCHYHIMRFLI 309

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                 YE  +++   ++F DL++   ++L+       +R    ++   IL+DE QDT  I
Sbjct: 310  PAVEFYEHKREELSYMNFNDLLLRARNMLRDYPE---VRQYFQRKYRTILVDEFQDTDPI 366

Query: 192  QWEVIRSLTEDFF---VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            Q E++  LT +        N    P +LF VGD KQSIY F  A+       K +   R 
Sbjct: 367  QSELLFYLTGEEVQEKTWYNLSPRPGSLFVVGDPKQSIYRFRRADIDTYNLVKDLIVDR- 425

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ--VG 306
                    I+EL  +FRS   +   ++ VF      +     +         R  +    
Sbjct: 426  -----GGEILELTANFRSVNSLGEWLNPVFQELLPEESDKYQAKHAPLETIKRDEEVIGE 480

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
               L   +  +   +     +  +   + +  +      AR+IA +I  ++ +       
Sbjct: 481  QSDLAGLLSKRLGVRKLSVPQGLSKKEEVMEAD------ARQIAQSIRRLLNSSG----- 529

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                 QA D ++++R ++              +  I V       + D   +++L  L  
Sbjct: 530  ---GYQASDFMIILRYKEGMDKYARALE----NEGIPVAMTGGSSMGDCFELQELYKLLL 582

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +   ++ +  + +L+   F   +D +++   +   +  +Y  + +  N    K    + 
Sbjct: 583  CLKEPDNQVYLIAVLRGLFFGLDDDTLYQ-FKENGGSFNIYSSLPETDNKSTQKVAQALD 641

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKG--RQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
             + + +      SP      ++                      L + L    + E    
Sbjct: 642  RLKKYLSWKNKYSPSICLEKLVSELGLFPYTFTCGEMEESRSGYLYQLLEIVKQTEIEGE 701

Query: 545  SSLQELISELEQ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +    ++ ++E      P       S   N V++M +H AKGL++PVVFL +   +V   
Sbjct: 702  TDFVSMVEKIEDVLTINPEEELDIFSQKQNAVQLMNLHKAKGLQAPVVFLANPVKKVNPE 761

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSR------NNIVSDLIKHLKKSTQEEYNRLLYVG 654
            K + K     +     G   +      R       +      +   K  + E NRLLYV 
Sbjct: 762  KFVTKHIKRTAGTTPTGYFTFSEVRNFRRKEIGIPSDWEKYREEELKYLESEENRLLYVA 821

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
             TRA + L+I    ++   K      W  ++ +S      ++     N    D  +  + 
Sbjct: 822  ATRAEELLVIS---DSEESKVRKYNPWCSLLDNSPEEVLELELEVNDNDQQFDGVLLGDN 878

Query: 715  STHH-PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID---------- 763
                  E    + ++  +Q     +  +K    +    +     + S             
Sbjct: 879  QEQVNGEELTEQLQKIREQKYKWIEPHEKPSYLLHTPSSLEKTASESKTSSSDFFQISIE 938

Query: 764  ----------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                      T+     +S   + +    G I+H+  +++       +   IT    +  
Sbjct: 939  SIIQSREDELTEEIDPEKSDRGELKGAVLGNIVHRAFELLIKDCYQDKIT-ITGLLQEYR 997

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSV-------------------- 851
            +  P  + + L+  +    +   +   +S      +EV                      
Sbjct: 998  EEDPDGKKEALIQELIYKFKASQLWDKISRSDQVLTEVPFHLKTEPQESLHEFISNNIKD 1057

Query: 852  SGKINCPKKD--------IIISGRIDQISISQQ-----NIFIFEYKTH-------HHVPQ 891
            S KI    K+        I+ SG ID +             I +YKT             
Sbjct: 1058 SIKIKDSIKENENLDHVSIVFSGTIDLVFKDPDSVRDSEWVIVDYKTDLIEASNEQQKNH 1117

Query: 892  EIEHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKV 932
             I+ +   +  QLS Y+++ +     +++    +       +
Sbjct: 1118 AIDQLKNQYSPQLSAYQQVFEKL-TRETVQASAIYIARTGDL 1158


>gi|325694248|gb|EGD36164.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK150]
          Length = 762

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/590 (16%), Positives = 185/590 (31%), Gaps = 119/590 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q   +I +DE QD
Sbjct: 166 EIVAKCYTAYQKELRQSEAMDFDDLIMLTLRLFDQNPD---VLTYYQQRYQYIHVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L   F          + +  VGD  QSIY + GA+ + +L  ++     
Sbjct: 223 TNHAQYQLVKLLASRF----------KNICVVGDADQSIYGWRGADMQNILDFEKDYP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  ++ L  ++RST  IL   ++V     N +  +                   
Sbjct: 271 ------EAKVVLLEENYRSTKTILQAANEVIRNNRNRRPKN------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + ++  +    D   +       A  +A TI  +           
Sbjct: 306 --LW-------TQNEDGEEIVYYRANDEQDE-------ALFVARTIDQLSREG------- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  +            I               I+D+++    
Sbjct: 343 ---YSHKDFAVLYRTNAQSRTVEEAL----LKSNIPYTMVGGTKFYSRKEIRDVISYLNL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG-----ISKF 481
           I +  D++S+  ++  P        + KI      +  ++ +                  
Sbjct: 396 IANPSDNISYERVVNEPKRGVGPGTVEKIRDFAASQEISLLDASANILLSPVKGKAAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 + +L       +       +L          ++   E    I+ ++EFL+ T  
Sbjct: 456 YDFANMLLDLRERLDDFTVTKLVEAVLEKTGYAAALAAQATLESQARIENIEEFLSVTKN 515

Query: 539 NEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            +++       S L +L   L +              +EV +MT+H AKGLE PVVFLV 
Sbjct: 516 FDESPDNPADESGLDKLSRFLNDLALIADTDDGDTESSEVTLMTLHAAKGLEFPVVFLVG 575

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF      +                                              Y
Sbjct: 576 MEENVFPLSRASEDEDELEEERRL----------------------------------AY 601

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           VG+TRA   L +   ++     K+N       + +   +    + +    
Sbjct: 602 VGITRAEKILYLTNANSRMLYGKTNYNQPTRFLREISSDLLDYQGLARPA 651


>gi|301156005|emb|CBW15476.1| DNA-dependent ATPase I and helicase II [Haemophilus parainfluenzae
           T3T1]
          Length = 725

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 112/602 (18%), Positives = 206/602 (34%), Gaps = 117/602 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L  K+ V   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRAYELFAKKPV---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  I+ L  +             +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 234 YVWIKILAGN----------TGKVMIVGDDDQSIYGWRGAQVENIQKFLKDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL   +++ S   +  G +                     LW 
Sbjct: 276 -NAETIRLEQNYRSTGNILKSANQLISNNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +     + F+ L +       A+ +A  I N +               
Sbjct: 313 ------TDGEMGEPVGIYAAFNELDE-------AKFVASQIQNWVDDGGKLD-------- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q             +      
Sbjct: 406 DDAAFERVINTPTRGIGDRTLDVLRNLTRERQITLWQAVQVAIQENMLTGRASTALLRFQ 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++        +    G +    I+ L+E +  T    + 
Sbjct: 466 ELINSLQVDTAEMPLFAQTDFVIKHSGLYDMYKQEKGEKGEVRIENLEELVTATREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           N    + +L + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 526 NEAEDMTDLTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGIFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKQ 611

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L IC   +     K  +      + +      +  +++ T +   ++      ST  PE
Sbjct: 612 KLTICYAESRRVYTKEERHLPSRFITELPSECIQEIRLRGTVTRALNQAKVGSLSTSLPE 671

Query: 721 NT 722
           N 
Sbjct: 672 NE 673


>gi|71906108|ref|YP_283695.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
 gi|71845729|gb|AAZ45225.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
          Length = 1134

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 142/967 (14%), Positives = 289/967 (29%), Gaps = 108/967 (11%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER----FSL 68
              LI +DL  +       +   +                 +   S            +  
Sbjct: 224  AALIERDLAAVGGLLDGRMQSLLMPLARFAAANAPGLLDAIADWSSPLTAAIADLPTWQA 283

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-- 126
            L+   LT   T +K++  +       +L ++ K   +    +R            +    
Sbjct: 284  LAGLLLTGTGTLRKSVDKRIGFPADKELADQKKAMLELLGDLRSVDGLEAALAMLVKLPQ 343

Query: 127  --------------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                            L +        A ++   +DF ++       L   D    +   
Sbjct: 344  PELSEAEWATVECFSRLLRLAAGQLWLAFQEAGEVDFIEIAARAGLALGDDDAPTDLAQA 403

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            +D  I H+L+DE QDTS  Q  +I  LT  +          RTLF VGD  QSIY F  A
Sbjct: 404  LDYRIRHLLVDEFQDTSPSQVGLIEKLTRGWM-----PDDGRTLFVVGDPMQSIYRFRKA 458

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +    LR +            +   + L  + RS   I+  V+  F     A+   E   
Sbjct: 459  DVGLFLRVRER-----GIGDIRLGHLRLFRNNRSYPGIVDWVNAAFPSIFPAEDSPEAGA 513

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                                   S                        +A   ARR+   
Sbjct: 514  ------------------VRYAESAATRSPRADSGVVVHPVIEHEGGDAAGEEARRVLTI 555

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            I              +R   A+ I VLVR R     +    R    + +      D   L
Sbjct: 556  IRE-----------ARRAAPAERIAVLVRARSHLDALVSEIRRSAPELR--FQAVDIEGL 602

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----Y 467
                 ++DL+ L R +  + D + ++ +L++P       D+  +     ++         
Sbjct: 603  DGRQHVQDLLTLFRALHHRADRVHWLALLRAPWCGLKLADLHALAADDKKSTIWQLMQDE 662

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
              + + ++ G  + +HV+  +H+         P  +   +     G +   +    E ++
Sbjct: 663  ARLARLSDDGQQRLRHVLGVLHQAFAGRDRQHPRRWLEGVWLMLGGPRCLEA---PEALN 719

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
             ++ F     +   +   S       L  +   +        + V++MTVH +KGLE   
Sbjct: 720  DVEAFFALVDKLVASRTLS----AETLAAHAAELYAPSDPLGDAVQMMTVHKSKGLEFDT 775

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK-----SRNNIVSDLIKHLKKS 642
            V L     +   +     +    +  D     +  P  +             L K   + 
Sbjct: 776  VILPGLHRETGGNDSSLLLWDEVAGADGDEHLLVAPIKQKGAGNGEPTAYDYLKKLEAER 835

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
               E  RLLYV  TRA  +L +   +    +K+   ++  +            ++  L  
Sbjct: 836  AAHEDERLLYVAATRAIRRLHLLGIAVADAKKEEGLKSPANGTLLKLLWPGVAQREFLAA 895

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                +       S       P         +    + P +   P  N ++     +  ++
Sbjct: 896  LTEGESGEPARASIDPATFVPPLVRLREVHVPPALRSPAEGVRPADNPVDLDTPESTLSL 955

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--------FITSYCTKNAK 814
            +                 + G ++H+ L++I         +            +      
Sbjct: 956  E----------------ASVGTLVHRCLELIAKNGLPAWSDKRISGLQPVYQRWLQAQGH 999

Query: 815  LWPAKE--YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
                 E     ++ ++   L +      ++    S  +     +     + ++  ID++ 
Sbjct: 1000 SEADAESGAGEVVAALVSTLASDTGRWLLTDHPQS--AAEQAWSSTDGSLTVNHVIDRVF 1057

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            ++    +I +YKT      E+     ++  QL  Y  +         L   + +  + ++
Sbjct: 1058 VADACRWIIDYKTVRLPDAELPQRAESYRPQLERYASLFAG--DPLPLRLAIYFPLQGRL 1115

Query: 933  FIIPQNK 939
              +P   
Sbjct: 1116 IELPAAM 1122


>gi|327399219|ref|YP_004340088.1| UvrD/REP helicase [Hippea maritima DSM 10411]
 gi|327181848|gb|AEA34029.1| UvrD/REP helicase [Hippea maritima DSM 10411]
          Length = 667

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 113/680 (16%), Positives = 218/680 (32%), Gaps = 125/680 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L +K  + L                      + ++   L  +  +      
Sbjct: 31  GAGSGKTKTLTHKIAFILNEGLAKPYQILALTFTNKAAGEMKERIGKLIGSQASDMWIGT 90

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKIRDRFNT 116
           F  ++   L ++        +++      ++ +KL         +        ++ +   
Sbjct: 91  FHSIALKILRKEGFRPTIYDSKDQENLIKEILKKLNIDSKKYTPRAFCSSISSLKLKLTK 150

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            +  K         K +   YEE+  K   +DF+++I+   +LL++ +    +R K   +
Sbjct: 151 PEDLKVNSPFEKYLKSVYRLYEESLAKANAVDFDNIILRVIELLEENED---VRKKYSNK 207

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +I IDE QDT+  Q+  +R L           +S   + AVGDE QSIY F GA+   
Sbjct: 208 FKYIFIDEYQDTNYPQYLFVRLLY----------NSSNIVCAVGDEDQSIYGFRGAQIDN 257

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L+  R  +           II+L  ++RS  +IL + + + S     +     S     
Sbjct: 258 ILKFDREYEN--------CKIIKLEKNYRSAQEILNIANTLISKNNLRKEKRLYSDKI-- 307

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                    G + +        +                          A+ +A  I  +
Sbjct: 308 --------GGRISIVNLATETEE--------------------------AKFVAEQIQKL 333

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                             DI VL R    +  I          Y I           +  
Sbjct: 334 KLEGENLY----------DIAVLYRTNFQSRTIEEAL----IRYSIPYNIIGSKRFLERK 379

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN 475
            IKD++A  + +++  DD++F+  + S         +  I   +     +++E  +    
Sbjct: 380 EIKDVIAYLKLLVNPNDDIAFLRAIGSHPRGIGAKFLEVISKAKDSLNTSMFEASKWLIE 439

Query: 476 CGI--SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                 + +  +K    +  I    S       I+     +         + I  + E  
Sbjct: 440 KKKVTPRQEKALKQFLSVFDINTAKSVDKIIDEIIQISGLKNHLEQTDDFDRIANIMELK 499

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           N        + ++L+  + +L                 VR+MT+H +KGLE   VF+V  
Sbjct: 500 N------TGNLNNLESFLEDLSLLD--YSNELEEQKESVRLMTIHASKGLEFNTVFIVGV 551

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F ++++K                                    +   EE  RL YV
Sbjct: 552 EEGLFPNENLK----------------------------------RDELDIEEERRLFYV 577

Query: 654 GMTRASDQLIICKHSNTSNE 673
            +TRA   L I   S+    
Sbjct: 578 AITRAKTNLFISHASSRRRG 597


>gi|323342307|ref|ZP_08082539.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463419|gb|EFY08613.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 1040

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 152/922 (16%), Positives = 309/922 (33%), Gaps = 130/922 (14%)

Query: 30   DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT--- 86
            D+   +++S E+ +P   K  +  +Q+S    + E    L S    Q  +    I T   
Sbjct: 228  DVQGIIAISDESYDPNDKKGKKYFEQSSMLLQVTEGLRTLESLIHQQDISFYDQIPTVCN 287

Query: 87   -QEINK--------KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-TLAKYLNAH 136
             + I          +   +++ + +  + ++ + + F        T++ L  + +     
Sbjct: 288  FKVIADTKNDVYTEQRKRIEKTVNRIFENYMPLDEHFRLLNNQIETVSLLIKMTQDYIEA 347

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            +   K++   LDF D       +L + D    I   +  +   I++DE QDT+  Q E+I
Sbjct: 348  FSSLKEEENCLDFNDFESMALRILNEND--GEISELVKHKYKEIMVDEFQDTNEYQDEII 405

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
              +           S+   +F VGD KQSIY F GA+P  +                   
Sbjct: 406  TKI-----------STGNNIFRVGDIKQSIYRFRGAKPNIMQNLMLD---------DTTQ 445

Query: 257  IIELPLSFRSTADILTVVDKVFSIPEN-AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             + L  ++RS  DI+   + VF    N   G++ D    +                   +
Sbjct: 446  NLYLSFNYRSKKDIVEYNNYVFDKLMNLTFGITYDEHDHVN----------------VGI 489

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                   +P +       D+  +++S  + A+ IA  I N                + KD
Sbjct: 490  PAQSEDTHPVEIHIIEKHDNRFKKTSDQLRAQHIAQEIINYHSQG----------YRFKD 539

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            +++LVR            +    +Y I    +D+        I  ++AL  +  +  D  
Sbjct: 540  MVILVRSHASKGY----LKEAFEEYNIPHYIDDQSGFYKSEIIASVVALLNYATTFHDFY 595

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                +L SP +N+S+D I  +      +       +         +Q +   +       
Sbjct: 596  LVP-VLTSPFYNYSDDQIAALKLMDASSIR-----KALEIENPELYQSLDDMVLSWRSK- 648

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                  D  ++I    +    + +    +    LD  L   ++ +  S  +LQ  +  + 
Sbjct: 649  ------DLISIIQEIIQLNDVYNNTLSLQDKTNLDFLLEKAIQYQAVSVPTLQGFVRFVA 702

Query: 556  QYPPTIKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            ++        S    + + V  MT+H +KGL+ P+VFL   G       H   +    + 
Sbjct: 703  EFKDDTSSEASPLNKDADIVTAMTIHQSKGLQFPIVFLWGMGRHAV-RDHSDILLNDDTF 761

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                       +  SRN I + +         EE  RLLYV +TR    LI+        
Sbjct: 762  GIGLNHVELPMRFVSRNLIRTVMEIKQDNEEIEENLRLLYVALTRPQKHLILV------- 814

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
                      D+V +        + ++           A   +T       +E  E   +
Sbjct: 815  ----------DVVKEYQPTSLDYQLLRNHKRKVDLLLAASPHNTVIRVIDGMELTENSLK 864

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
             +++++I       +   +++   +           +L    S       G  +H+ ++ 
Sbjct: 865  PIEQEEISTIFTEKLPLTLDQEVPI------LTKNRDLNFDKSFEFATGFGSTLHEAVEK 918

Query: 793  IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS 852
            +                    +LW   + +N      R L+      + + + Y    + 
Sbjct: 919  LPH------------------RLWTEADLENFESKFKRRLQ-AYNQHSFTQELYRYPHIQ 959

Query: 853  GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
             ++          G ID    ++  + + ++K+ +     +E I   +  Q+  Y+K L 
Sbjct: 960  QEVPYLIDGDA--GVIDFYVYNETELILVDFKSDNAP---LEIIVERYEDQIKAYKKALG 1014

Query: 913  DSYPNKSLVCLLIYVSEPKVFI 934
              YP   +   +          
Sbjct: 1015 IIYPELLIKTYIYSFHLNHYIP 1036


>gi|253574626|ref|ZP_04851966.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str.
            D14]
 gi|251845672|gb|EES73680.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str.
            D14]
          Length = 1341

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 143/932 (15%), Positives = 278/932 (29%), Gaps = 116/932 (12%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQAS 57
             L  +   + +  D        +S + +  +L++  G P          L   ++LQ+A 
Sbjct: 217  ALEKSAWVQSLLADTKLALGGAISLLTQAKALALSPGGPEPYAVTLEDDLNVVRSLQEAV 276

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI-------KI 110
                    +         +    +K+    E+ ++   L+E+ KK+  +           
Sbjct: 277  AGGAWASLYDAFQGVNFGKLKPVKKDQTDPEVQERVKALREEAKKTVTDLRTQLYGRPPE 336

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV----- 165
                  + M     A   L       Y   K     LDF DL      +L+  D      
Sbjct: 337  AFLREMHDMAPLLGALSELVSEFGERYRLQKVSKGWLDFSDLEHYCLQILRHPDSEPGEL 396

Query: 166  -SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
              +    +  ++ + +L+DE QDT+ +Q  ++R ++ +         +P   F VGD KQ
Sbjct: 397  RPSDAALEYRRQFDEVLLDEYQDTNTVQETIVRLISRE---------NPGNRFMVGDVKQ 447

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PE 282
            SIY F  AEP   L + RI       AG     I+L  +FRS  +++  V+ +F     E
Sbjct: 448  SIYRFRLAEPGLFLEKYRIYGDNFDGAGL---RIDLARNFRSRREVVDAVNLLFRQIMNE 504

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE--- 339
            +   +S D+   + +      +       E ++   D+  +   +S     +        
Sbjct: 505  SVAEISYDTRAELVYGEGFPPEGAEDYRPELLLIDRDNGSSGGSDSSERGDNEWTDGDGG 564

Query: 340  ---------SSASILARRIAYTISNMIGTD------TIFSNGKKRVIQAKDILVLVRKRK 384
                      +  + AR IA  I  M+G                R +  +D+++L+R   
Sbjct: 565  DEEDEAALIEAVRLEARAIAARIRGMLGEGGEPLRIYDKQLQAMRPVAFRDMVILLRS-- 622

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
             T               I   G           ++ +++L + I +   D+    +L+SP
Sbjct: 623  -TLTWAPAMIEELRVEGIPAYGELSQGYFQASEVETMLSLLQVIDNPLQDIPLAAVLRSP 681

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------------------------- 479
            L++FSE+++  I             + + A                              
Sbjct: 682  LYDFSEEELADIRLASPSGRYYEAVLARAAAGNAESALSDSRGGDAGEASVYHPETGQIE 741

Query: 480  ---------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVL 529
                     K Q  ++ +     +A+     D    I       +       G +    L
Sbjct: 742  PSANDALALKLQAFLRQLEAWRSMARVGQLGDLIREIYRETGYLEWVGGLPGGTQRQSNL 801

Query: 530  DEFLNFTLRNE-QNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGL 583
               L+   + E  +S   L   +  + +                  + VRIMT+H +KGL
Sbjct: 802  QALLDRARQYEVSSSAPGLFRFLRYVTRLRENGGDLGAPGDAGEQGDGVRIMTIHKSKGL 861

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E PVVF+     Q           +   L   P       +          + +  +   
Sbjct: 862  EFPVVFVAGLSKQFNRQDLNAPFLMHKELGFGPKYVDANTRVSYPTLPNLAIRRRAQMEL 921

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNE-----KKSNQRTWYDMVYDSFHNDERVKKI 698
              E  R+LYV +TR  D+L++        +       + + +   +              
Sbjct: 922  LAEEMRVLYVALTRPKDKLVLVSSVKNLTKSVEAWGGALEASEQQLPDYLLARGRCYLDW 981

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                 I              PE  P    ++           +        +        
Sbjct: 982  IGPALIRHPSARELRQFAGLPEVGPAVLADSPSDWHIAFLSARSAGQNGGAETEAAATAE 1041

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
             + +DT     L S             +  L +        + +  + S  +       A
Sbjct: 1042 ATAVDTAQIKALLSGQP--------TAV--LAEDADGTEAAEMRAMVESRLSWTYPYAAA 1091

Query: 819  KEYKNLLL----SITRLLENPMMTTAMSCDSY 846
                            +L+   +    +    
Sbjct: 1092 SRIAAKTSVTEMKALLMLQEEPVRDVFAEAEL 1123



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 67/201 (33%), Gaps = 34/201 (16%)

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR---KNFITSYCTKNAKLWPAKEYKN 823
            +              RG+  H L+Q +    E      +  +     +  K+  A++   
Sbjct: 1143 RRPRFMEQRKLTPTERGVAYHTLMQHLPFDAEPGIAVVQATLARLIER--KIMTAEQAAA 1200

Query: 824  L-LLSITRLLENPMMTTAMSCD-SYSEVSVSGKINC------------------------ 857
            + + SI RLL++P+       D    E+  S  +                          
Sbjct: 1201 IEVDSIARLLQSPLGELLRQADWVKREMPFSYGLPAAEASPQLGGLEAMQDGTAGDAIRE 1260

Query: 858  -PKKDIIISGRIDQISISQQNIFIFEYKTHHHVP--QEIEHIPYTHIAQLSIYEKILKDS 914
               + ++I G +D +  +   +++ +YK+   +        +  ++  QL +Y K +++ 
Sbjct: 1261 LDGETVLIQGIVDCLFAAGGKVYLLDYKSDRVLEHRGGAAALAESYRFQLELYAKAVEEI 1320

Query: 915  YPNKSLVCLLIYVSEPKVFII 935
              +      L +    +   +
Sbjct: 1321 TGSTVDEKWLYFFDGGQAVRL 1341


>gi|219668857|ref|YP_002459292.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2]
 gi|251764522|sp|B8FXD7|ADDA_DESHD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|219539117|gb|ACL20856.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2]
          Length = 1392

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 140/848 (16%), Positives = 274/848 (32%), Gaps = 105/848 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
              P+     S +  ++    E G  + ++ A     A+           L    + ++ +
Sbjct: 250  YLPVLEDDQSRL-GFLREMAEKGTWSDIETAFK-SAAAFPGLPRGSKKNLPDSLIDEENS 307

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
             +    +++   ++    E++K +              KM +       + ++    Y++
Sbjct: 308  KRLREESKKARDEAKKKLEEIKNTVFSVPLTDQLPFLNKMGELVGTLAQVTQHFAREYQK 367

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            AK++   +DF DL      LL K      I  K+      +L+DE QD + +Q  +++ +
Sbjct: 368  AKRQRNCVDFSDLEHYALQLLAKDKQPTEIALKLQAYYAEVLVDEYQDINPVQERILQLV 427

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS-II 258
            +               LF VGD KQSIY F  A+P   LR+           G   + +I
Sbjct: 428  SR-------QEEGKANLFMVGDVKQSIYRFRMADPGLFLRKYGEFPHYQEGGGAAPNLVI 480

Query: 259  ELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQV------GTVQL 310
            +L  +FRS  +++  ++ +F     E A  +  D    +R  +  +         G +++
Sbjct: 481  DLNQNFRSRPEVIQGINYLFYQIMTEGAGEIVYDEQAALRPGAKFVSDGELRTAEGPIEV 540

Query: 311  WEQVVSQHDSQCNPQQESWTSYFD-------------------------SLPQESSASIL 345
                    D     ++ +  +  +                         SL +  +A I 
Sbjct: 541  HLFDPKAIDLSLGQKRGAEDAATEVDSPAKGEGEEFEQNREPESGDDESSLEEAETARIE 600

Query: 346  ARRIAYTISNMIGTD----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            AR +A  I  M+            G  R +Q  DI++L+R       +  +         
Sbjct: 601  ARLVAARIQKMVLEREFQIHDKELGDYRPVQYADIVILMRS---LASVASVYAEEFQKAG 657

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC---- 457
            I V             +  +++L + I +   D+ F  +L+SPL   +  ++ K+     
Sbjct: 658  IPVYAETNSGYFGTNEVDTVLSLLKIIDNPRLDIPFAAVLRSPLVGMNGTELGKLRSLLP 717

Query: 458  -----------------TQRHETETVYEYIQKFANCGISKFQ------------------ 482
                              ++ E    Y  I++                            
Sbjct: 718  QGDFYETLVLTFWAGDAHRQEEGHEFYSEIREILGKHWESLPQLEVKVRHILETSPEIKE 777

Query: 483  ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLR 538
                    + E  H ++  S  D    +               G +    L    +   R
Sbjct: 778  KVDAFFPKLQEWRHRSRRTSLADLLWHLYEDTGYLAYVGTLPAGAQRQANLRVLYDRACR 837

Query: 539  NEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             E  +Y  L   +  LE+                  N VR +TVH++KGLE PVVF+   
Sbjct: 838  YEATNYRGLFRFLRFLEKFQSQGKDLGNASIVGEKENVVRFITVHSSKGLEFPVVFIAGL 897

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            G +  +     ++ +   L     +     Q +  + I   + + L +    E  R+LYV
Sbjct: 898  GKKFNTRSLSSQLLLHSHLGVGIPLIDIENQVRYPSVIQYAVKERLWQEALAEELRILYV 957

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
             +TR  ++L +  H +   E  +  R+           D      +L  +    +W+   
Sbjct: 958  ALTRGKERLFLFGHQHKLAEAINKWRSLALSC-----PDTAFPDGQLRGAKTYLDWLGPA 1012

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
               H  +   L    T  +L D     K +                S  +       +  
Sbjct: 1013 LVRHPEDLFKLGSFPTASELPDSSSQWKVILHDQIAGKGPVQEATSSQDEI--ILPDQET 1070

Query: 774  LSDNQTFN 781
            L + +   
Sbjct: 1071 LGEREASE 1078



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 98/303 (32%), Gaps = 22/303 (7%)

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               +    E K+++ T       +            T ++ ++ +    W   +PE    
Sbjct: 1089 SGKTEIPGETKNSEETKTSEDKKNLEAQTPETADLDTKNLQEEVFRQLNWQYPYPEGVNQ 1148

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
              + ++ +L   Q +            +     +  +  +  +        +     RG 
Sbjct: 1149 SAKTSVSELK-RQSLWYMDNEYSSPSSSSSSSPSALSAPSFLRPQFIVSRKELTPAERGT 1207

Query: 785  IIHKLLQVIF-----TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-------SITRLL 832
             +H  +Q +         E   +    S   ++      +E  +           +  LL
Sbjct: 1208 AVHAAIQHLPLALWRDTWEELAQEVRESMLQEHIDSLIRREILSAEQGGAVSVSQLKNLL 1267

Query: 833  ENPMMTTAM-SCDSYSEVSV--SGKINCPKKDIIISGRIDQISIS--QQNIFIFEYKTH- 886
            ++        + +   EV    S ++   K+ +++ G ID + +S  +    + ++KT  
Sbjct: 1268 DSTSGKRLWEAEEVRREVPFTLSLRLRAQKEPVLVQGIIDAVLLSHQEHEAQVMDFKTDN 1327

Query: 887  -HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFIIPQNKLNKAF 944
               VP     +   +  QL +Y   ++       +   +IY  S  + F++ +  +  A 
Sbjct: 1328 LAGVPDPELVLTQRYGLQLGLYALAVERLLKV-PVRECIIYATSLNREFVMQREAVQAAL 1386

Query: 945  AEI 947
              +
Sbjct: 1387 ESV 1389


>gi|313894359|ref|ZP_07827924.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441183|gb|EFR59610.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 1304

 Score =  286 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 115/733 (15%), Positives = 231/733 (31%), Gaps = 53/733 (7%)

Query: 28  VSDINKYVSLSMET-GNPTILKKAQTLQQASQTQCIEERFSLLSSF------FLTQK--- 77
              + +   + +++ G             A       + +  +         F+  +   
Sbjct: 237 RERLERMEQILLDSVGPHKWQNIYDNQLAALGMLSSAQTWDDMGEACKHTDTFIKDQFRM 296

Query: 78  FTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRD---RFNTYKMFKSTLASLTLA 130
            + +       +  +   L    K+ LK  Q     + +   +      +      + L 
Sbjct: 297 GSKEAQAFDPILVAEFKSLGSQNKDDLKAMQGAVFTVSEATLQDQFKAQYPIIEGLVELT 356

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEV 185
              +  Y + K++  ++DF DL      LL     +     + +  ++      I++DE 
Sbjct: 357 IAFHKAYRDMKQEQGIMDFSDLEHLCLALLVEPGTEDDPQPSDVAKELQDTFKEIMVDEY 416

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q  +I  +           S     F VGD KQ+IYSF  A+    + +     
Sbjct: 417 QDTNGVQETIINLI-----------SRVDNRFYVGDVKQAIYSFRMADSSLFMEKYNTYG 465

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
               +       I+L  +FRS  +IL   + +F      +    + T        RI + 
Sbjct: 466 ----DTDAVERRIDLAKNFRSHENILAATNFLFYQIMTEEAAELNYTEAESLIPGRIVED 521

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA--SILARRIAYTISNMIGTDTIF 363
              + W     +       +     S  D    +           I   I  +       
Sbjct: 522 AP-EDWVGGDVELQILDVSKDTLGASESDEDEGDDPENNERELDFIIQKIKEIHAAKKQV 580

Query: 364 --SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +G  R I+ +D  +L R                    I  V N+R    +   I+ L
Sbjct: 581 QNPDGTFRQIEWRDFAILRRSLAGWGTRAV---EAMRQAGIPAVVNERDGYFEAQEIQLL 637

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           +AL   I + E DL    +L S L     +++  +     E                 + 
Sbjct: 638 LALLSIIDNPEQDLPMAAVLHSGLVGLDANELGALRLS-GEGSLWSLMPAYAEESQDERL 696

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE 540
              I ++     +++     D    I  ++           G      +    +     E
Sbjct: 697 LAFIGHMERWRTLSRRHGVTDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYDRAKGYE 756

Query: 541 QNSYSSLQELISELEQYPPTIKRAH-----SANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            + +  L   +  +E    + +        S   N VR+MT+H +KGLE PVVFL     
Sbjct: 757 ASGFRGLFRFLRFVESLRDSNQDMPLANVVSEADNVVRLMTIHKSKGLEFPVVFLSGVQK 816

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
           +        ++ I  +            +          +    + + + E  R+LYV +
Sbjct: 817 RFNMMDLRSELLIDKNAGLGLKGYFPDIRVSFPTMPWFYVKDVKEAALKAEEQRILYVAL 876

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYD-SFHNDERVKKIKLTNSINKDEWIAYEW 714
           TRA D+L +               +  +++ + +    +++    +T +    EW+   +
Sbjct: 877 TRARDKLFLTGFVKGFKNSGGKLSSLGELINNVATVEGQQLPTDIITQANTYLEWLIMSF 936

Query: 715 STHHPENTPLERE 727
           + H     PL   
Sbjct: 937 TRHLDGGNPLRVA 949



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 13/171 (7%)

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                L+S          G ++H+ +Q +      +               +  +E   L 
Sbjct: 1126 KPQALQSEEDVLTGAQWGTLMHEAMQWLPLAKYTQASLTKELDALVTKGTFTEEERNLLS 1185

Query: 826  L-SITRLLENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQ 875
              S+ +   + +    + +     E+  S               +D+ + G ID      
Sbjct: 1186 DTSLYKFFSSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGEDLFLQGIIDTAFEED 1245

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                + +YKT        E +   +  Q+ +Y++ L+       +    IY
Sbjct: 1246 GGWVLVDYKTDRVKSG--EDLIKRYKIQMDLYKEALQRL-TGMPVKVCYIY 1293


>gi|300779590|ref|ZP_07089446.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium ATCC
            33030]
 gi|300533700|gb|EFK54759.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium ATCC
            33030]
          Length = 1100

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 128/965 (13%), Positives = 258/965 (26%), Gaps = 167/965 (17%)

Query: 84   IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
            +    + +++    + +                 + +            L        ++
Sbjct: 193  MPPSRVREEAEAFIDNVAAL-PRGRAKEQYAKEVRGWIDKQRLRAAYTDLAEELSRELRE 251

Query: 144  NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              V+ F + +     L         +          +++DE QDTS  Q  ++RSL  + 
Sbjct: 252  RGVVTFNEQMSVAAQLASNHPS---VGESQRGRFRVVMLDEYQDTSHAQRVLLRSLFGEN 308

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                  H  P T+ AVGD  Q+IY + GA    +              G      +L  S
Sbjct: 309  RDDLARHPHPLTVTAVGDPMQAIYGWRGATAANLQAFVDDFP---LADGASAPKAQLTTS 365

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            +R+  ++L + + V S    A G             +     G V++             
Sbjct: 366  WRNPPEVLALANSVSSAVLGAPG---PQRAVEPLNPNPASDPGNVEV------------- 409

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                 +    D      +  + A         +     + S             VLVRK 
Sbjct: 410  ----GFYGPVDEEIAAVADMLAADFH----EQLAEHGDVSS------------AVLVRKN 449

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            K + LI            I         L     + D +A+ + ++  +D  + + +L  
Sbjct: 450  KQSALIAEALEE----RGIPYEIVGLAGLLTVPEVADAVAVAKMLVHPQDSAAALRILAG 505

Query: 444  PLFNFSEDDIFKICTQ-------------------------------------------- 459
            P       DI  +  +                                            
Sbjct: 506  PACGLGLKDITALSRRAVNLAGGRAHDQDDSAVAGLGPDADPRERLQAQLTDLIREAENA 565

Query: 460  ---RHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                  +  + + +              ++ Q +   +  L   +      D F  I+  
Sbjct: 566  VGENERSVGLADAVADLGEPERYTEEGLARLQVLSSQLRALRMRSLGKRLPDLFDDIVSI 625

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA--- 567
               R + +SR  +     LD+F            + L+  ++ LE               
Sbjct: 626  FGIRTEVLSRPSDTGTVHLDKFAETVASY---PGADLEGFLNYLELATEHEDGLAPGTVA 682

Query: 568  -NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
               + V+I+T H AKGLE   V +    +  +       +  + ++ DD    +    ++
Sbjct: 683  NTGDRVQILTAHKAKGLEWRTVAVAHADAATYGGTAETFLGYVATVPDDSYTALAEADTR 742

Query: 627  SRNNIVSDLIKHLKKSTQEEY-NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            S    +++  K  K +   E   RL YV +TRA  +L++     +   KK  +   + + 
Sbjct: 743  SDFQKLTNQYKKDKTAELAEESARLFYVAVTRAERRLLVTASGISPTRKKPVEPYSHFLP 802

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE-------TIKQLMDEQK 738
            +             +T+ +         W  +  E   ++  E        + QL   + 
Sbjct: 803  FRDMAEVLSWWDGTVTDELTDIREREGFWPHYSAEPAAVDAAERVNAALKDLPQLTAGEL 862

Query: 739  IPKKLFSPIKNDINEPYILNPST--------------------IDTKGKTNLESLLSDNQ 778
                              ++PS                          +         N 
Sbjct: 863  YGLWERDVTALIEEHEATMSPSVPVIMPAMLTASDIVALRANPEQFARRARRPVPFKPNS 922

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               RG   H+ ++  F                    L    E                + 
Sbjct: 923  YAKRGTAFHEWIEGFFGARP----------------LLDDDELPGNTEPDVDATTLARLK 966

Query: 839  TAMSCDS---YSEVSVSGKINCPKKDIIISGRIDQISISQ-------QNIFIFEYKTHHH 888
             +         +   +            + GRID +            +  I ++KT   
Sbjct: 967  ASFEASHWAQRAPAHIEHPFEIDLGSASVRGRIDAVYRDAPTPEAPHGSWTIVDWKTGAK 1026

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPN-KSLVCLLIYVSEPKVFIIPQNKLNK-AFAE 946
                          QL++Y +  K    +   +  +  YV   + F  P +   +    E
Sbjct: 1027 PQATEMRAA---KLQLAVYREAWKRIAGDGLPVNAVFFYVRTGEDFA-PHDLPERGELEE 1082

Query: 947  ISTKI 951
            +    
Sbjct: 1083 LLQTA 1087


>gi|222086413|ref|YP_002544947.1| DNA helicase II protein [Agrobacterium radiobacter K84]
 gi|221723861|gb|ACM27017.1| DNA helicase II protein [Agrobacterium radiobacter K84]
          Length = 828

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/551 (18%), Positives = 179/551 (32%), Gaps = 109/551 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+   K     DF DL+++  ++ ++      +     Q   +IL+DE QDT+ 
Sbjct: 220 RELYFAYQARLKTLNACDFGDLLLHPINMFRQNPD---VLKDYHQRFRYILVDEYQDTNT 276

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +            + +  VGD+ QSIY + GAE + +LR ++        
Sbjct: 277 AQYMWLRLLAQRP------KGELQNVCCVGDDDQSIYGWRGAEVENILRFEKDFP----- 325

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL     + +  E   G +  +  T                
Sbjct: 326 ---GAKVIKLERNYRSTEHILGAAAHLITHNEGRLGKTLFTDRT---------------- 366

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                       +  +    + +DS  +       AR I   I  +        N     
Sbjct: 367 ----------DPDDIKVQVHASWDSEEE-------ARAIGEEIEQLQRG-----NSSGVK 404

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +  D+ +LVR              L     ++          + L I+D MA  R +  
Sbjct: 405 HRLNDMAILVRASFQMREFEDRFVTL----GLNYRVVGGPRFYERLEIRDAMAYFRLVCQ 460

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++ +P     +  +  +    R     +           +           
Sbjct: 461 PADDLAFERIVNTPKRGLGDTTVRALHDYARVRNIPMLAASADIIETDEMKPKPRKALFD 520

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
           V++       + +     +    IL        + +    E    ++ L E +      E
Sbjct: 521 VVQSFRRWQGLLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSMDSFE 580

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    +   LE     +    + N + V IMT+H+AKGLE   VFL      +F H
Sbjct: 581 S--------MRGFLEHVSLVMDVEQNENLDAVSIMTLHSAKGLEFETVFLPGWEEGLFPH 632

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       ++  EE  RL YVG+TRA  
Sbjct: 633 QRSLD--------------------------------ESGRAGLEEERRLAYVGLTRAKR 660

Query: 661 QLIICKHSNTS 671
           +  I   SN  
Sbjct: 661 RCHIWFVSNRR 671


>gi|218281364|ref|ZP_03487842.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989]
 gi|218217456|gb|EEC90994.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989]
          Length = 725

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/587 (17%), Positives = 188/587 (32%), Gaps = 120/587 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  + +   +DF+DL++  + LL      + ++ K    +++I +DE QD  
Sbjct: 170 LAKIYAGYEARRNEMKAMDFDDLLLEGHRLLNS---VSSVKEKWQNRLDYIHVDEFQDVD 226

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ+ +I+ LT               L  VGD  Q+IY++ GA    +L+  +  +    
Sbjct: 227 PIQYGIIKLLTG----------KNTHLCVVGDPDQTIYTWRGASVDIILKFNKDFE---- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   + L  ++RST  IL   + V    +                           
Sbjct: 273 ----PCKTVILNENYRSTQPILDASNAVIKYNKERIDK---------------------D 307

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L+ ++           +E                     +A  I+             K+
Sbjct: 308 LYTKLPGDEKITMFEGKEDSEEPI--------------FVARQINE----------KHKK 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            ++ KD+ +L R    +     + + +     I  V        +   IKD +   R   
Sbjct: 344 GLEYKDMAILYRSNYSSRAFERIFKSV----GIPYVIYGGIRFYERQEIKDALCYLRLCT 399

Query: 430 SQED--------DLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK---FANCG 477
           ++ +        DL+ + ++  P        I  +          +Y+ ++     +   
Sbjct: 400 NRNEEDPDQMALDLAVLRVINVPRRGIGARTIENLQKQAAERHMNLYDVMKDPIGLSTAV 459

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFL-N 534
             K +  +  I +L    +  +  DF   +L               G + ID L E   +
Sbjct: 460 TKKCEMFVDLIEDLRENREHYALEDFLDYVLDTTGYISMLKEDRESGQDRIDNLKELKED 519

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                 ++   +L+  + ++  +          + N V +MTVH AKGLE   VFLV+  
Sbjct: 520 IAQSMIEDPEMTLESYLQDIALFTDKT---QETSENTVSLMTVHAAKGLEFDTVFLVNFN 576

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             VF                                              EE  RLLYV 
Sbjct: 577 DGVFPSSR--------------------------------ACDEGGMKALEEERRLLYVA 604

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           MTRA   L I  ++  S  + + +               + +K +  
Sbjct: 605 MTRAKKTLYITWNTGFSYMQDAFKTPSRFRAEIPMEYIVQEEKEEAP 651


>gi|309801365|ref|ZP_07695494.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium
           JCVIHMP022]
 gi|308222254|gb|EFO78537.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 794

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 113/728 (15%), Positives = 217/728 (29%), Gaps = 124/728 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  +      +           ++      T   E   
Sbjct: 74  AAAEMRERLAALVGPEAERMWISTFHSACVRILRRDG--DQIGLKSGFSIYDTADSERLI 131

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK---MFKST 123
            L+ +          K    + I  K  D K  L   +D+       +   +        
Sbjct: 132 KLIGADLNID----LKRYTPRMILGKISDYKNSLISWKDQLKTYAADYRPGQRGYQLGRF 187

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   + + Y+    +   +DF+DLI+ T +L +    ++        +  +I +D
Sbjct: 188 DNVEELFAVVYSEYQYRLAQANAVDFDDLIMRTVELFRTCPQASDY---YRHKFRYIFVD 244

Query: 184 EVQDTSLIQWEVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L+        D          P  +  VGD  QSIY+F GA+ + 
Sbjct: 245 EYQDTNHAQYVLVRELSGIDSGEQADPHATGAGRVGPSWVTVVGDSDQSIYAFRGADIRN 304

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   +                I L  ++RST  IL   + V +  EN +           
Sbjct: 305 IQDFEEDFPN--------AKTIMLEQNYRSTQTILDAANAVIAKNENRKPKK-------- 348

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +                +  +       A   A  IA  I+ +
Sbjct: 349 -------------LWTAL-------GKGDPIIGYAADN-------AQQEAGYIASEITRL 381

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +          I   D+ ++ R    +  +         +  +           +  
Sbjct: 382 HTEE---------GIAYSDMAIMYRANAQSRSLEETM----INANLPYQLVGGTKFYERR 428

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            +KD +A  + I++  DD++   +L  P           +        T +    +  + 
Sbjct: 429 EVKDAIAYLQAIVNPADDVNMRRILNVPKRGLGARAEGLVAMYADRHGTTFFDGIEHLDQ 488

Query: 477 GISKFQHVIKYIHELIHIAQFC---------SPHDFFTLILGAKKGRQQFISRFGNE--- 524
                    K +     +              P +    +L      ++       +   
Sbjct: 489 IEGMTGRTAKPLGAFRDLMHELVDFAKAHDAKPSEVVAEVLSRSGLLEELQRSEDPQDAS 548

Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKG 582
            +D L +  +     EQN+   +L   +        + +      +  +V +MT+HTAKG
Sbjct: 549 RVDNLSQLQSVAAEFEQNTPDATLAGFLETTALVADSDQLPGENEDSGKVTMMTLHTAKG 608

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFL       F H                                         S
Sbjct: 609 LEYPVVFLTGMEQGTFPHS----------------------------------RAMEDTS 634

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E  RL YVG+TRA  +L + + +  +   ++N+      + +   +    K+ +   
Sbjct: 635 ELSEERRLAYVGITRAKRRLYVTRAAVRAQWGQANEMMPSQFLDEIPEDLIDWKRKEAGM 694

Query: 703 SINKDEWI 710
              +  W 
Sbjct: 695 ERMRGGWQ 702


>gi|91787605|ref|YP_548557.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666]
 gi|91696830|gb|ABE43659.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666]
          Length = 825

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/682 (14%), Positives = 203/682 (29%), Gaps = 151/682 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + A YEE  ++  V+DF +L++ + +LL+       +R    +   HILIDE QDT+ +
Sbjct: 184 EIYALYEEQCQREGVVDFGELMLRSYELLRDNTA---VREHYQRRFRHILIDEFQDTNKL 240

Query: 192 QWEVIRSLTEDFFVGKNTHS--SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           Q+  I+ L           +     ++ AVGD+ QSIY+F GA    +    R    +  
Sbjct: 241 QYAWIKMLAGQGPEATQGAAVMPGGSVVAVGDDDQSIYAFRGARVGNMTDFVREFDVQ-- 298

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RS  +IL   +++ S      G +  +           G+   V 
Sbjct: 299 ------HQIKLERNYRSFGNILDSANELISHNSKRLGKNLRTEAG-------PGEPVRV- 344

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                       + +S    A+     +  ++            
Sbjct: 345 ---------------------------YEATSDFAEAQWFVDEVKQLVRDG--------- 368

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + K+I +L R    + ++         +  +           +   IK  +A  R + 
Sbjct: 369 -AERKEIALLYRSNAQSRVMETAL----FNAGVPYRVYGGLRFFERAEIKHALAYLRLLE 423

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           +  DD SF+ ++  P        I ++    R    ++++ +        +     +  I
Sbjct: 424 NPHDDTSFLRVVNFPPRGIGARSIEQLQDISRASGCSLHDGVSAVTGKAGANLGAFVAKI 483

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN-------- 539
             L       +  +   L+L      + + + + G + ++ L E +N             
Sbjct: 484 DVLREQTTGLTLREIIELVLQHSGLEEHYKLEKEGQDRLENLAELVNAAESFVSQEGFGR 543

Query: 540 --------------------------------------------EQNSYSSLQELISELE 555
                                                       +  +  +L  L + L 
Sbjct: 544 DAVALPVDELGSRANLALGQSPASQGLDPSAALLSEPLPELLAPDTETGETLSPLAAFLT 603

Query: 556 QYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                       A  + V++MTVH++KGLE   VF+      +F H++            
Sbjct: 604 HAALESGDNQAQAGQDAVQLMTVHSSKGLEFDCVFVTGMEEGLFPHENS----------- 652

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                         EE  RL+YV +TRA  +L +          
Sbjct: 653 -----------------------MSDHDGLEEERRLMYVAITRARKRLYLSYSQTRMLHG 689

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           ++          +      +    K     +     +  W           R +    + 
Sbjct: 690 QTRYHLKSRFFDELPEAALKWITPKNQGFASGLGMGSSGWGGAGNSGASGTRGDWASNVF 749

Query: 735 DEQKIPKKLFSPIKNDINEPYI 756
             +    + F+           
Sbjct: 750 SSKSGSSERFANPPVPPQRNAP 771


>gi|295114066|emb|CBL32703.1| ATP-dependent DNA helicase PcrA [Enterococcus sp. 7L76]
          Length = 752

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 215/635 (33%), Gaps = 108/635 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 91  FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 150

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 151 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 209 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 258 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 309 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I   +  +              D  VL R    + ++  +         I      
Sbjct: 335 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A    I + +D +SF  ++  P     +  I K+          + 
Sbjct: 382 GHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALL 441

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  Q       +     +  +    I +L     + +  +     L     R+  +++  
Sbjct: 442 EAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNN 501

Query: 523 NE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSAN 568
            E    ++ LDEFL+ T   ++              + L + +++L             +
Sbjct: 502 LESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--LEES 559

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 560 SSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 594


>gi|325570044|ref|ZP_08145969.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC
           12755]
 gi|325156872|gb|EGC69043.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC
           12755]
          Length = 785

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/636 (16%), Positives = 210/636 (33%), Gaps = 108/636 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L  +         
Sbjct: 69  GAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVSQLLGSGGEDVWVST 128

Query: 66  FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +        KN    + ++++  +K  LK+                    
Sbjct: 129 FHSMCVRILRRDVDRIGYSKNFTIIDSSEQNTLMKRVLKELNIDPKKYDPRSILGTISHA 188

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + +++   SL   +       Y++  + N  +DF+DLI+NT  L +  + +  
Sbjct: 189 KNELLTPEAYQAMEGSLFEQIVGRCYEKYQKELRNNQCMDFDDLIMNTIRLFQDNEDA-- 246

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 ++ ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 247 -LQFYQRKFHYIHVDEYQDTNHAQYTLVNLLAARF----------RNLCVVGDADQSIYG 295

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++             + I L  ++RST  IL   ++V     N    +
Sbjct: 296 WRGANMQNILDFEKDYP--------DAATILLEQNYRSTQTILNAANQVIKNNRNRPDKN 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW           + ++ ++        +  S    AR 
Sbjct: 348 ---------------------LW-------TENRDGEKITYY-------RGDSERDEARF 372

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I           +  +  D  +L R    + +I  +         +      
Sbjct: 373 IVSEMQKQIAE---------KNRKFGDFAILYRTNAQSRIIEEML----LKANVPYTMVG 419

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I+D++A    I +  D +S   ++  P        + K+         ++ 
Sbjct: 420 GRKFYDRKEIRDILAYLSAIANPRDSISLERIINVPKRGIGATSVEKLRDFANLHEWSLL 479

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E          +     +       +     +  + S  +    IL     RQ+ +++  
Sbjct: 480 EAAMNVELANISGKAGKELGSFGMMMDGFAQMVPYLSVTELTKEILEKTGYRQELVNQNN 539

Query: 523 NEVI---DVLDEFLNFTLRNEQNSYSS-----------LQELISELEQYPPTIKRAHSAN 568
            E     + L+EFL+ T   ++   +            L   +++L            ++
Sbjct: 540 LEAQARLENLEEFLSVTQEFDKRFEAQNEDDADAPDEKLSVFLNDLALLSDVDSYEEESS 599

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
              V +MT+H AKGLE PVVFL+     +F      
Sbjct: 600 Q--VTLMTLHAAKGLEFPVVFLIGLEENIFPLSRAL 633


>gi|261496496|ref|ZP_05992876.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307699|gb|EEY09022.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 732

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 111/580 (19%), Positives = 203/580 (35%), Gaps = 117/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L K +     I  +  Q    ILIDE QDT+ I
Sbjct: 176 EIYQIYQDACDRAGLLDFAELLIRAYELFKTKPT---ILQRYQQRFQQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L  D             +  VGD+ QSIY + GA+ + + R            
Sbjct: 233 QYDLIRLLAGDV----------GKVMIVGDDDQSIYGWRGAQVENIQRFLNDYDN----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL+  +++ +  +N  G +                     LW
Sbjct: 278 ---AQTIRLEQNYRSTGNILSCANELIANNDNRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +       F+ L +       AR +A  I      +           
Sbjct: 314 -------TDSGDGEPVDIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --AECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     +  +  +    R    T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQEEQLSGRATSSLLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ I+ L    +  S  +    ++      + +    G +    I+ L+E +  T +  +
Sbjct: 466 VELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFVK 525

Query: 542 -NSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +    L +L + L            S + + V +MT+H+AKGLE P VF+V     +F 
Sbjct: 526 PDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSAKGLEFPRVFIVGVEEGIFP 585

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                    +   +E  RL YVG+TRA 
Sbjct: 586 SGMSFD-----------------------------------EGRLQEERRLAYVGITRAK 610

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +L I    +     K  +      + +      R  +++
Sbjct: 611 KKLTISYAESRRLYGKEERHVPSRFIAELPEEHIREVRLR 650


>gi|83309824|ref|YP_420088.1| superfamily I DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82944665|dbj|BAE49529.1| Superfamily I DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 864

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/658 (17%), Positives = 206/658 (31%), Gaps = 120/658 (18%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                 + +DR  T     +   +   AK L   Y++  +     DF DL+++   +   
Sbjct: 271 LMATIQRWKDRAVTPDKAAADGGAEGQAKTLYRAYQDRLRSLNACDFGDLLLHVLTVFLS 330

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
              +     +      ++L+DE QDT++ Q+  +R L +          + R +  VGD+
Sbjct: 331 DAEA---LARWQGRFRYLLVDEYQDTNVAQYLWLRLLAQ----------THRNICCVGDD 377

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIYS+ GAE   +LR ++              ++ L  ++RST  IL     + +  E
Sbjct: 378 DQSIYSWRGAEVGNILRFEKDFP--------GAKVVRLESNYRSTPHILAAASTLIANNE 429

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G +      I H    I ++ T  +W+                              
Sbjct: 430 GRLGKTLR--PGIIHEPEAIEKIRTKAVWDG----------------------------- 458

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +A  I  +               +   + +LVR    T               I
Sbjct: 459 EAEARMVAEEIETLQRRGE----------KLSSMAILVRAGFQTREFEERL----ITTGI 504

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRH 461
                      + L I+D MA  R ++S  D L+F  ++ +P     E  +  I    R 
Sbjct: 505 PYRVIGGPRFYERLEIRDAMAYLRLVVSAADGLAFERVVNTPKRGLGEAAVQTIHMVARA 564

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           E   + E  +      +            I+ +     + +     +    IL       
Sbjct: 565 EQVPLLEAARRLVDTDELKPKARQALARFIEDVDRWRSLLESMPHPELAATILDESGYVD 624

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
            + +    +    ++ L E +      +         L S LE     ++    A+ + V
Sbjct: 625 MWKADKSADAPGRVENLKELVAALEEYDS--------LASFLEHVALVMENDSRADLDSV 676

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            IMT+H AKGLE   VFL     +VF H                                
Sbjct: 677 VIMTLHGAKGLEFDSVFLPGWEEEVFPHSR------------------------------ 706

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS----NEKKSNQRTWYDMVYDS 688
              +        EE  RL YVG+TRA  ++++   +N       + +   R   ++    
Sbjct: 707 --ALAESGTKGLEEERRLAYVGLTRARKRVLVSFAANRRIYNQWKSQLPSRFVEELPESH 764

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                         + +K  W    WS         E          + +     F P
Sbjct: 765 VERSGERGLHGGGLAESKAAWNDPAWSRARFGQPRRETAAAPSWGQAKPRESAGGFKP 822


>gi|116493558|ref|YP_805293.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
           pentosaceus ATCC 25745]
 gi|122264978|sp|Q03D71|ADDA_PEDPA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116103708|gb|ABJ68851.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus
           pentosaceus ATCC 25745]
          Length = 1235

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 118/710 (16%), Positives = 244/710 (34%), Gaps = 50/710 (7%)

Query: 39  METGNPTILKKAQTLQQASQT-----QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKS 93
           ++        +   L+    +       +++  S +    L +    +            
Sbjct: 246 LKNAAEKFQNEVDDLKTIIDSLNGSWDDVQQAVSKMKFAQLPRGKKEEVQEFNAYAKSIR 305

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            D K++     D++ K+                +  + +       + + K     LDF 
Sbjct: 306 NDFKDEFNTIADKYFKLSSEQMIAVFKDAHDLMMKLIEVQNQFAERFLQEKLTRRSLDFS 365

Query: 151 DLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           DL      + L   +    IR    Q+ N +++DE QD + +Q  ++ S+          
Sbjct: 366 DLEHFALQIVLDDSEEGQAIRRDFQQKFNEVIVDEYQDINPLQETILTSVAS-------- 417

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
              P  +F VGD KQSIY+F  A+P   + +    +    +  Q    I L  +FRS  +
Sbjct: 418 -PDPGNMFMVGDVKQSIYAFRMADPSLFISKNNQFK----DEEQADERIILAENFRSMRN 472

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           +    + +F+   + +    +     + +         VQ   +V+   DSQ +   +  
Sbjct: 473 VDDFTNLIFNQVMDTEVGEIEYDDDAQLQFGAKYYPDEVQNNTEVMIYDDSQTDINDKEA 532

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDT 386
           T    +           + IA  I  +    T   + K    R ++  DI +L     + 
Sbjct: 533 TPIISNKNDGQL-----QMIAQRIQKLFADHTQIYDKKEQKMRDLEYSDIALLHSTGSNN 587

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             I    +     Y I +  N+         +  +MAL + I +   D+    +L+SP+ 
Sbjct: 588 LEIVDTFK----KYGIPIQVNNAQDYFQTTEVSIMMALLKIIDNPYQDIPLAAVLRSPMV 643

Query: 447 NFSEDDIFKICTQRHETETVY-----------EYIQKFANCGISKFQHVIKYIHELIHIA 495
              E+++  +   +                  +   +F     +K  H ++ +     +A
Sbjct: 644 GLKENELAFLRIGKKNGHYFEALLYFLNEAKLDSNNEFQMQLKTKITHFLEQLDHFSKLA 703

Query: 496 QFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           +  +  D    I               G +  + L    +     E++S+  L + +  +
Sbjct: 704 RQSTLVDLLWAIYDETGYLDYVGGMPDGPQRQNNLHALYDRAKGYEESSFKGLFQFVRFV 763

Query: 555 EQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           E+     K         +   V++MT+H +KGLE P+VFL+D      +     +  +  
Sbjct: 764 EKMRDKNKDLAENPVVTDVKAVKLMTIHGSKGLEFPIVFLIDAEHGFNTMDEKGRYVLDR 823

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                  +  +I + +      + +I   K+    E  R+LYV +TRA  +LII    N+
Sbjct: 824 DAGMGITLKDFIHRLEIDTVQKNWIISIKKQKALAEKLRVLYVALTRAEQKLIITGAVNS 883

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +++  +      D        + R K     + I             + +
Sbjct: 884 ADDTLNKWAEAVDTDETLIPAEARSKVSNFLDWIGMAIMRVPSVVEKYAD 933



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 79/242 (32%), Gaps = 22/242 (9%)

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST---IDTKGKTNL 770
            +  H    T     +++ ++      P K      ++++    + P      ++      
Sbjct: 995  FKYHDEAATTTTAYQSVSEIKRVFDDPDKFELNF-SEVDADQHIKPQNRFVTESLMAPRF 1053

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SI 828
             +  +  +    G   H +LQ +                         ++  N +   +I
Sbjct: 1054 MNEATKPKAAEIGTATHLILQQLDLNQPINETIIKDKIGELVMNRVLDEQVANRIRISTI 1113

Query: 829  TRLLENPMMTTAMS--CDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNI 878
                ++ +    ++   + + E + S  +             D++I G ID     +  +
Sbjct: 1114 LDFFDSDLGQLMINHPENVHREEAFSLLLPAKGLFPKVKGDDDVLIHGIIDAYFEMEDRV 1173

Query: 879  FIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVF 933
             + +YKT   +P  +E     +   +  Q+++Y + L      + +    L  +S  ++ 
Sbjct: 1174 ILLDYKTDFVLPGSVEQGIEKVINRYQGQVNLYAQALGSIL-KRPVNEKYLYLLSIGRLV 1232

Query: 934  II 935
             I
Sbjct: 1233 EI 1234


>gi|254491461|ref|ZP_05104640.1| UvrD/REP helicase domain protein [Methylophaga thiooxidans DMS010]
 gi|224462939|gb|EEF79209.1| UvrD/REP helicase domain protein [Methylophaga thiooxydans DMS010]
          Length = 723

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 120/692 (17%), Positives = 225/692 (32%), Gaps = 140/692 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +     S  N             +  + + +            
Sbjct: 30  GAGSGKTRVLVHRIAWLIQAEDFSPANILAVTFTNKAAAEMRGRIEDILGYPPGGMWVGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR------------ 113
           F  L+   L  +   +   + Q       D + ++ K     +++ +             
Sbjct: 90  FHGLAHRLL--RSHWKDADLPQSFQILDSDDQLRMIKRIVRAMELDEAQWPPKQAQWYIN 147

Query: 114 ------FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVS 166
                      +             +   YE+A ++  V+DF ++++ +++L LK+ D  
Sbjct: 148 GQKDEGLRAKDIQAGNDPYSQKMLAIYQAYEQACQRAGVIDFAEILLRSHELWLKRPD-- 205

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             I  +  Q    IL+DE QDT+ +Q+  +R LT               LF VGD+ QSI
Sbjct: 206 --ILAQYQQRFRQILVDEFQDTNTLQYAWLRLLTGH----------SGNLFIVGDDDQSI 253

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + +L+                + I L  ++RST +IL   + V +      G
Sbjct: 254 YGWRGARIENILQFDNDYPNS--------TTIRLEQNYRSTGNILKAANAVIANNSERLG 305

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                 +LW           +       + F+   +       A
Sbjct: 306 K---------------------ELW-------TDGEDGTPIQVYNAFNERDE-------A 330

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +   I+  +              Q  D  VL R    + +I            +    
Sbjct: 331 SYLVSQINKWVDDGK----------QRSDTAVLYRSNAQSRVIEEAL----LQANMPYRV 376

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  +   IKD++A  R + +++DD +F  ++ +P        + ++    R    T
Sbjct: 377 YGGLRFFERAEIKDVLAYLRLVANRQDDAAFERIVNTPTRGIGAATLTQLRQYARERGIT 436

Query: 466 VYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           +++  ++      FA    +     I  I  L         H+   L++     R  F  
Sbjct: 437 MWQSSREMLDAKAFAARAGNALAGFITLIDSLTPEQPDMPLHELTQLVIDETGLRAHFAK 496

Query: 520 ---RFGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEV 572
                G   I+ LDE    T +    +   + S+ +L + L        +       + V
Sbjct: 497 DKSEKGQGRIENLDELATATRQFVRPQDEEFESMSDLDAFLSHAALEAGENQGDRWEDCV 556

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H+AKGLE P+VF+V     +F  +      +                        
Sbjct: 557 QLMTLHSAKGLEFPMVFMVGMEEGLFPGQKSSDDPL------------------------ 592

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                        E  RL YVGMTRA   L +
Sbjct: 593 ----------RLAEERRLCYVGMTRARQTLYL 614


>gi|309805630|ref|ZP_07699672.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165068|gb|EFO67309.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners
           LactinV 09V1-c]
          Length = 779

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 133/804 (16%), Positives = 257/804 (31%), Gaps = 110/804 (13%)

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD KQSIY F  A+P   L++         +       I L  +FRS+ ++  +V+ +
Sbjct: 1   MVGDVKQSIYGFRQAQPHLFLQKYHQFSNEVQS-----ERIILSDNFRSSKNVTQIVNNI 55

Query: 278 FSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           F     EN  G++      +++ +      +GT   +    S  D      +E   +  D
Sbjct: 56  FDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEVNDLD 115

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391
            +            +   I  +   D    +     KR I+  DI +L R + +      
Sbjct: 116 EIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE----NL 161

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                  + K+ +  +D         +  +    + I + + D+  V +++SPL+ F+E 
Sbjct: 162 KLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEP 221

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDFFTLI 507
           +  KI      + + Y+ I  +      +      + I  +    + +      +    I
Sbjct: 222 EFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELSHFRNFSIDHRISELICDI 280

Query: 508 LGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561
                  +       G +    L+         E + +  L + I+ +++        + 
Sbjct: 281 FQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQ 340

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             +     + +++MT+H +KGLE P+VFL+    +           I        G+ I 
Sbjct: 341 PLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLGLTIT 398

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-- 679
               +  + + S      K    EE  R+LYVG+TRA  +LI+       N     Q   
Sbjct: 399 TADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANENIIPDFQNKL 458

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT----------------- 722
             ++ +     ++       L   +  ++      S    E                   
Sbjct: 459 DAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQA 518

Query: 723 ----------------------------PLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                                       P +   T        +I K    P   + +  
Sbjct: 519 SVKISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNS 578

Query: 755 YILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809
            ++N +       ++  + L          G  +H LLQ              + I +  
Sbjct: 579 KLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLV 638

Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857
            +N          +L               A    S + Y E+  S            N 
Sbjct: 639 LQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFND 696

Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKD 913
               I++ G ID   I    I +F+YKT       +E    ++   +  QLS+Y   L +
Sbjct: 697 VNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNN 756

Query: 914 SYPNKSLVC-LLIYVSEPKVFIIP 936
              +K +    LI +S  K+  + 
Sbjct: 757 L-SDKKVKAKYLILLSINKIVKVD 779


>gi|17546954|ref|NP_520356.1| DNA helicase II protein [Ralstonia solanacearum GMI1000]
 gi|17429255|emb|CAD15942.1| probable dna helicase II protein [Ralstonia solanacearum GMI1000]
          Length = 829

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 125/840 (14%), Positives = 248/840 (29%), Gaps = 174/840 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W +   +VS                +  +   +   +        
Sbjct: 63  GAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTNKAAKEMTARLSAMLPINTRGMWIGT 122

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  L +  L    +     +     +   +   +K  LK              Q      
Sbjct: 123 FHGLCNRLLRAHYRDAGLPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPPKNVQYFINGA 182

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++       +           L A Y+   ++  V+DF +L++   +LL+  D    IR
Sbjct: 183 KEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVDFSELLLRCYELLRYNDA---IR 239

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               +   HIL+DE QDT+ +Q+  ++ L      G     +P  +FAVGD+ QSIY+F 
Sbjct: 240 AHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEAGV----TPNAIFAVGDDDQSIYAFR 295

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    ++  +R  +            I+L  ++RS  +IL   + + +      G +  
Sbjct: 296 GANVGNMVDFEREFR--------VAHRIKLEQNYRSHGNILDTANHLIAHNTRRLGKNLR 347

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++       +                          A  I 
Sbjct: 348 TD---------AGHGEPVRVYPSATDGQE--------------------------AGWIV 372

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I   I + T             +I +L R    + +I            I        
Sbjct: 373 EEIRERIASGTA----------RSEIAILYRSNAQSRVIEHAL----FSVGIPYKVYGGL 418

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEY 469
              +   IK  +A  + + + ++D +F  ++  P        + ++         ++   
Sbjct: 419 RFFERAEIKHALAYLQLLENPDNDAAFGRVVNFPARGVGARSLEQLQDAAKLYGVSLAAS 478

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528
           +        +K    ++ I ++    +  +  +    ++ A      +     G + I+ 
Sbjct: 479 VPYLTGAAGTKLAAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQGEKEGLDRIEN 538

Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549
           L E +             +                                         
Sbjct: 539 LQELVTAAQAFVAEEGYGVDAIATALPMRHDAMLRIEGGETDSDAVTELVADETPTEMTP 598

Query: 550 LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           L++ L             A  + V++MTVH AKGLE  VVF+      +F H++      
Sbjct: 599 LVAFLTHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFHVVFITGLEEGLFPHENSL---- 654

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                         L     EE  RL+YV +TRA ++L +    
Sbjct: 655 ------------------------------LDTDGLEEERRLMYVAITRARERLYLS--- 681

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                           V           +          +W+    +  H   +P  R +
Sbjct: 682 -----------FAQSRVLHGQIRYHIRSRFFDELPEATLKWL----TPQHTGYSPTRRAQ 726

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG-LIIH 787
             + +  +    ++ F   +   NE Y   P+     G T  ++  +    F  G  + H
Sbjct: 727 GGQGMQGDSAWGREWFKRPERGDNEAYTGRPTGGMDTGNTYADTKRAAGTGFRVGQSVFH 786


>gi|255066057|ref|ZP_05317912.1| DNA helicase II [Neisseria sicca ATCC 29256]
 gi|255049602|gb|EET45066.1| DNA helicase II [Neisseria sicca ATCC 29256]
          Length = 736

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/550 (17%), Positives = 188/550 (34%), Gaps = 120/550 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           A+ I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------AQFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D + + ++  P        +  + T    +  T+++     A    +K    ++ I  L 
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACN-AGAKATKIAAFVRLIEALR 465

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQ 548
           +        +    IL      + + ++ G   + +D LDE +N  +    E +++  L 
Sbjct: 466 NQVGQMPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILP 525

Query: 549 E---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +         +++ L        +    A    V++MTVH AKGLE   VFL       F
Sbjct: 526 DNISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRF 585

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                      ++   EE  RL+YV +TRA
Sbjct: 586 PSEMSL----------------------------------AERGGLEEERRLMYVAITRA 611

Query: 659 SDQLIICKHS 668
             +L I    
Sbjct: 612 KKRLYITMAQ 621


>gi|297158179|gb|ADI07891.1| ATP-dependent DNA helicase II [Streptomyces bingchenggensis BCW-1]
          Length = 829

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/717 (17%), Positives = 227/717 (31%), Gaps = 132/717 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      VS  +      +   +  +         +       +  
Sbjct: 127 AAGEMKERVEELVGPRANAMWVSTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 181

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + K  +LK +L        +          F+ T   
Sbjct: 182 RLMALVCRDLDLDP-KRYPPKSFSAKVSNLKNEL------IDEETFAGQASDGFEKT--- 231

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+D+I+ T +LL+       +     +   H+L+DE Q
Sbjct: 232 ---LAEAYAMYQSRLREANALDFDDIIMTTVNLLQ---AFPDVAEHYRRRFRHVLVDEYQ 285

Query: 187 DTSLIQWEVIRSLTED---FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           DT+  Q+ ++R L        V       P  L  VGD  QSIY+F GA  + +L+ +  
Sbjct: 286 DTNHAQYTLVRELVGPGSVATVDGGEVIPPAELCVVGDADQSIYAFRGATIRNILQFEED 345

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       + I L  ++RST  IL+  + V    EN +  +               
Sbjct: 346 YP--------DATTILLEQNYRSTQTILSAANAVIERNENRRPKN--------------- 382

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 LW       D+        + +  +           A+ +A  I  +       
Sbjct: 383 ------LW------TDAGAGATITGYVADTEHDE--------AQFVADEIDRLTDAG--- 419

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   ++ D+ V  R    + +   +         +           +   ++D++A
Sbjct: 420 ------DARSGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDVLA 469

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ 482
             R + + ED +    +L  P     E     I      E  T  + +++         +
Sbjct: 470 YLRVLANPEDTVPLRRILNVPKRGIGERAEAMIDALSLREKITFPQALRRVDEAYGMAAR 529

Query: 483 ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
                      + EL  IA+  + P      ++       +  +    +    I+ L E 
Sbjct: 530 SANAVKRFNVLMEELRTIAESGAGPATVLEAVMERTGYLAELQASTDPQDETRIENLQEL 589

Query: 533 LNFTLRNEQ----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
               L  EQ     +  +L E + +  L      I    +     + +MT+HTAKGLE P
Sbjct: 590 AAVALEYEQERGEENPGTLAEFLEQVALVADSDQIPDDDTEGTGVITLMTLHTAKGLEFP 649

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VVFL      VF H                                       +    EE
Sbjct: 650 VVFLSGMEDGVFPHMRALG----------------------------------QTKELEE 675

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             RL YVG+TRA ++L + + +  S   +         + +      R ++   +  
Sbjct: 676 ERRLAYVGITRARERLYLTRSTMRSAWGQPAYNPPSRFLEEIPDQFVRWQRTGPSTP 732


>gi|294671393|ref|ZP_06736243.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306941|gb|EFE48184.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 735

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/549 (17%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGAHVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           A+ I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------AQFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I +L R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAILYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        I  + T  +E           A    +K    ++ I  + +
Sbjct: 407 DNALLRVINFPPRGIGARTIENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEAMRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 467 QVGQMPLSEIIVGILKDSGLTEHYKTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH +KGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHASKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|315653553|ref|ZP_07906473.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC
           55195]
 gi|315488915|gb|EFU78557.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC
           55195]
          Length = 779

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 132/804 (16%), Positives = 256/804 (31%), Gaps = 110/804 (13%)

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD KQSIY F  A+P   L++         +       I L  +FRS+ ++  +V+ +
Sbjct: 1   MVGDVKQSIYGFRQAQPHLFLQKYHQFSNEVQS-----ERIILSDNFRSSKNVTQIVNNI 55

Query: 278 FSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           F     EN  G++      +++ +      +GT   +    S  D      +E   +  D
Sbjct: 56  FDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEVNDLD 115

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391
            +            +   I  +   D    +     KR I+  DI +L R + +      
Sbjct: 116 EIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE----NL 161

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                  + K+ +  +D         +  +    + I + + D+  V +++SPL+ F+E 
Sbjct: 162 KLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEP 221

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDFFTLI 507
           +  KI      + + Y+ I  +      +      + I  +    + +      +    I
Sbjct: 222 EFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELSHFRNFSIDHRISELICDI 280

Query: 508 LGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561
                  +       G +    L+         E + +  L + I+ +++        + 
Sbjct: 281 FQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQ 340

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             +     + +++MT+H +KGLE P+VFL+    +           I        G+ I 
Sbjct: 341 PLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLGLTIT 398

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-- 679
               +  + + S      K    EE  R+LYVG+TRA  +LI+             Q   
Sbjct: 399 TADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANEKIIPDFQNQL 458

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT----------------- 722
             ++ +     ++       L   +  ++      S    E                   
Sbjct: 459 DAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQA 518

Query: 723 ----------------------------PLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                                       P +   T        +I K    P   + +  
Sbjct: 519 SVKISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNS 578

Query: 755 YILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809
            ++N +       ++  + L          G  +H LLQ              + I +  
Sbjct: 579 KLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLV 638

Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857
            +N          +L               A    S + Y E+  S            N 
Sbjct: 639 LQN--KLNPDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFND 696

Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKD 913
               I++ G ID   I    I +F+YKT       +E    ++   +  QLS+Y   L +
Sbjct: 697 VNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNN 756

Query: 914 SYPNKSLVC-LLIYVSEPKVFIIP 936
              +K +    LI +S  K+  + 
Sbjct: 757 L-SDKKVKAKYLILLSINKIVKVD 779


>gi|261880622|ref|ZP_06007049.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361]
 gi|270332663|gb|EFA43449.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361]
          Length = 847

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/679 (15%), Positives = 207/679 (30%), Gaps = 130/679 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           + A Y++  ++   +DF+DL+  T  +LK  +    IR K   +  ++L+DE QDT+  Q
Sbjct: 182 VYAEYQQRLRQANAMDFDDLLTVTYRMLKNDEA---IRKKYVGQFQYVLVDEYQDTNFAQ 238

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            +++  LT++           + +  VGD+ QSIY+F GA+   +L   +I         
Sbjct: 239 QQIVTLLTKE----------QQRICVVGDDYQSIYAFRGAKIDNILNFNKIYP------- 281

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               + +L  ++RST  I+   + +                 ++   S+  +   V ++ 
Sbjct: 282 -GAKLFKLEQNYRSTQLIVAAANSLMKHNSR---------QILKDVYSKNEKGEKVTVF- 330

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                    +  S    A  +   I  +   +           +
Sbjct: 331 -------------------------ETVSDKREAAMVCQEIKRIKKEE---------SCR 356

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    +       R  +         +          IKD++A  R +++  
Sbjct: 357 WSDFAILYRTNAQSRTFEDEMRKPEVGMGNCYRIHGGLSFYQRKEIKDIIAYFRLVVNPS 416

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYE-------YIQKFANCGISKFQHV 484
           D+ +F  ++  P        + KI     + + +++E       Y        +SK    
Sbjct: 417 DEEAFRRIINYPARGIGNTTLQKIIAAAQQHQVSLWEVVCNPHVYQLDVNKGTLSKLSSF 476

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
              I   I  ++          I+     +   IS    E     + +D  ++       
Sbjct: 477 QALIEGFITKSKTSDALTLGNEIIEQSGIKADLISDKSPEGDSRRENVDALVSGIADFVQ 536

Query: 540 -----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                +Q  Y+ L + +S +         +   N +++ +MT+H+AKGLE P VF+V   
Sbjct: 537 GQREDDQAEYAGLADYLSTVSLMTDVD--SDDGNGDKLTLMTIHSAKGLEFPTVFVVGME 594

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                                     YV 
Sbjct: 595 ENIFPSIMSSGTPRELEEERRLL----------------------------------YVA 620

Query: 655 MTRASDQLIICKHS-----NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           +TRA     +            +   +  R   D+           +++      + DE 
Sbjct: 621 ITRAEKHCYLTWSHSRWLYGKMDAFVNPSRFLNDIDPKYMTVRTEGRRMSGRWFDDDDED 680

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK------NDINEPYILNPSTID 763
           I   W      N P  R          +    +   P+           E     P    
Sbjct: 681 ICRPWDEDVELNQPYARSRQWGGGFSRRSDRLQNSRPVAGQFMADPKPKETASRRPEQAI 740

Query: 764 TKGKTNLESLLSDNQTFNR 782
                  E  L  +  + R
Sbjct: 741 NPFSPAFEERLKQSGRWKR 759


>gi|30250100|ref|NP_842170.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
 gi|30139207|emb|CAD86077.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
          Length = 1155

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 160/982 (16%), Positives = 314/982 (31%), Gaps = 126/982 (12%)

Query: 2    KNRF-GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            ++R   +      E I +    +P    S+I + +  +    +      + T++      
Sbjct: 227  RDRLESVLSGRIAEAIERLADAVPAGCQSEIIELMQFAAVNLSEAGSADSNTVRWPGNAL 286

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKK-----SPDLKEKLKKSQDEFIKIRDRFN 115
                 +  ++ F LTQ    +K +               D+KE L   +    ++     
Sbjct: 287  EDRLVWESMADFLLTQTGDWRKQVTKANGFPAPSSVRDADVKEYLNGMKQRMSELLVALQ 346

Query: 116  TYKMF--------------------KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
            + + F                    ++  A  +L K    +     +++  +DF ++ + 
Sbjct: 347  SEETFRQQLQLLRQLPPERYTDEEWETLQALFSLLKVAAGYLLLVFRQHGQVDFTEIAMA 406

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
                L + ++   +   +D  I+H+L+DE QDTS  Q E+++ LT  +  G       RT
Sbjct: 407  AVRALGEPEMPTDLALALDYRIHHLLVDEFQDTSSSQAELLQRLTAGWQTGDG-----RT 461

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            LF VGD  QSIY F  AE    L  +            +   + L ++FRS + I+  V+
Sbjct: 462  LFLVGDPMQSIYRFRQAEVGLFLDIRD----SGYFGQIQMRFLRLSVNFRSQSGIVEWVN 517

Query: 276  KVFSIP-ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + F     +   +S  + +     +      G                      +    D
Sbjct: 518  RYFPRILPDTDSVSTGAVSYASSVAFHAASSGEAVRIYP---------------YLQKDD 562

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                E   +I+A+  A                         I VLVR R     I    R
Sbjct: 563  RAEAEQVGAIVAQARAAQ-------------------PDGRIAVLVRNRSHLASIVVHLR 603

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                   +     +   L   + I+DLMAL R ++   D ++++ +L++P    S  D+ 
Sbjct: 604  ----RKGLRFQAVEIEQLAQRVVIRDLMALTRALVHPADRIAWLALLRAPFCGLSLQDLH 659

Query: 455  KICTQRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
             +     +   +            +  G  +   V+  +   + +    S       I  
Sbjct: 660  TVANTLPQHVLIDSLRACAGSGVLSEEGGQRVNRVLPILERALMLYDRMSLRRCVEGIWV 719

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSAN 568
            +  G     +       +V  + L      +   Y   +QEL   L +          A 
Sbjct: 720  SLGGPASVQNETDLADAEVYFQLLE---NFDVTGYRPDIQELDERLVRL---FALPDVAA 773

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS--- 625
             + +++MT+H AKGLE   V L   G      +      +           +  P S   
Sbjct: 774  DDSLQLMTLHKAKGLEFDTVILPGLGKSPRRDQEKLLNWLEFHDQSQHPGLLCAPISAAG 833

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
              +N I + ++   KK T  E  RLLYV +TRA   L +  H     + + N        
Sbjct: 834  SDKNPISAYILSEEKKRTALEEARLLYVAVTRAKHNLHLLGHLRIDPDMQEN-------- 885

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                 +  +  +  L   +       +   +       L        L     +      
Sbjct: 886  -----DALKPPEDTLLARLWPAVAADFLARSREAAIGDLPASNVHTGLQLVGMVRLVSGW 940

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL--------QVIFTLP 797
                      +   +      +  ++   +       G+++H LL        + +    
Sbjct: 941  QPPPLPKAVAVAMHANEAGTTEEPVDFDWAGEPARLVGVVVHCLLHRIGLIGVENVDHQD 1000

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL-----ENPMMTTAMSCD---SYSEV 849
                K    S   ++      +  +  +  + R L     E+      +S     +  E 
Sbjct: 1001 LEALKLAGRSLLIQSG--ITPRHLEKAVQQVARALRTMCVEDETGRWILSNRHQEARCEW 1058

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPY----THIAQL 904
            ++S          I    ID+  +    + +I +YKT  H    +E         +  QL
Sbjct: 1059 ALSVPTAIAAGHSISVSIIDRTFVDAAGVRWIIDYKTGSHTGGSLEEFLDREQLRYRPQL 1118

Query: 905  SIYEKILKDSYPNKSLVCLLIY 926
              Y ++L+    ++ +   L +
Sbjct: 1119 DRYAQVLQRM-EDRPMHLALYF 1139


>gi|317476225|ref|ZP_07935476.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907636|gb|EFV29339.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 760

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/620 (15%), Positives = 188/620 (30%), Gaps = 121/620 (19%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y E  ++   +DF+DL+  T  L +       +  +   +  +IL+D
Sbjct: 169 AAKMPAIRDIYRRYWERCRQADAMDFDDLLFYTFLLFRDHPD---VLARYQSQFRYILVD 225

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  L ++           R +  VGD+ QSIYSF GA+   +L   ++
Sbjct: 226 EYQDTNFAQHSIVLQLAKE----------HRHVCVVGDDAQSIYSFRGADIDNILYFTKV 275

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I++  + +    +        S            
Sbjct: 276 YP--------GTKVFKLEQNYRSTQTIVSAANSLIEKNQRQIRKEVFS------------ 315

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +   I+ +       
Sbjct: 316 ---------------EKEKGEAIGVYQAYSDVEEGDI--------VINKIAELRRQG--- 349

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       +               IKD +A
Sbjct: 350 ------NYAYSDFAILYRTNAQSRVFEEAMR----KRSMPYRIYGGLSFYQRKEIKDTIA 399

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R  ++  D+ +F  ++  P     +  + KI         +++  + +          
Sbjct: 400 YFRLTVNPNDEEAFKRIINYPARGIGDTTVSKITAAATDHNVSLWTVLCEPLTYGVNINK 459

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
             ++K Q     +   I      + ++  T I+               E     + ++E 
Sbjct: 460 GTVTKLQSFRDLMTGFIESVSEKNAYELGTEIIRQSGIIGDVCQDNSPENLSRKENIEEL 519

Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            N           E N+  +L + +SE+             +  ++ +MTVH+AKGLE  
Sbjct: 520 ANGMSDFCAQRQEEGNNNITLGDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEFR 578

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 579 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 604

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA D   +    +     K    +    + D      ++ +         
Sbjct: 605 ERRLFYVAITRAEDHCFLTYAKSRYRYGKMEFGSPSRFLKDIDVRFLKLPQDAGLGRRVD 664

Query: 707 DEWIAYEWSTHHPENTPLER 726
           +   ++   T      P   
Sbjct: 665 ESAASFRSRTRQEVIAPTVP 684


>gi|218550068|ref|YP_002383859.1| exonuclease V subunit beta [Escherichia fergusonii ATCC 35469]
 gi|218357609|emb|CAQ90248.1| exonuclease V (RecBCD complex), beta subunit [Escherichia fergusonii
            ATCC 35469]
          Length = 1186

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 126/878 (14%), Positives = 266/878 (30%), Gaps = 129/878 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +       D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 309  RHPLFDAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDAALR-S 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +                L  +GD K
Sbjct: 368  ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HQQPETALLLIGDPK 419

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 420  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGVVNSVNKLFSQTDD 469

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++      G    V          + +  P  + W    +        S
Sbjct: 470  AFMFREIPFVPVKSAGKNRGLHFAV----------NGEKQPAMKMWLMDGEYCSVGDYQS 519

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 520  TMAQVCAMQIRDWLQAGQRGDALLMNGDTSRPVRASDISVLVRSRQEASLIRDALTLL-- 577

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  + T
Sbjct: 578  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMTPEREDTLRSALATSMMGLNALDIENLNT 636

Query: 459  QRHETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                 ET ++ + +  +     ++   V+  +  L       S  +    +L    G ++
Sbjct: 637  ----NETAWDAVVEEFDGYRQLWRKRGVMPMLRAL------MSARNIAENLLATAGGERR 686

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 687  LTDIL------HISELLQQAGTQLESEHALVRWLSQHILEPDSNAASQQMRLESDKHLVQ 740

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L    +     +                      ++    +   
Sbjct: 741  IVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------QSFEAMLDLSEAK 787

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            + ++  +     E  RLLYV +TR+     L +        +KK         +      
Sbjct: 788  ESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGPTDVHQSALGRLLQK 847

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPEN------TPLEREETIKQLMDEQKIPKKLFS 745
             E      L   I           T    +           EE   + +          +
Sbjct: 848  GEPQDAAGLRACIESLCDDDITCQTPPRPDNIRWHMVESASEELSARNLQRSPGDNWRVT 907

Query: 746  PIK------------NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                                      + +  K +    +     +  + G  +H L + +
Sbjct: 908  SYSGLQQRGHGIAQDLLPRLDIDAAGTAVSEKSEEPQLTPHQFPRGASPGTFLHSLFETL 967

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVS 850
                                + W        + +I R   N     ++     D   E+ 
Sbjct: 968  DFSQPVDSAWVREKLELDGFETWWEPVLTEWIDAILRAPLNETGISLSQLTERDKQVEME 1027

Query: 851  VSG--------------------------KINCPKKDIIISGRIDQISISQQNIFIFEYK 884
                                          ++  +   ++ G ID +   Q   ++ +YK
Sbjct: 1028 FYLPITKPLIASQLDTLIRQFDSLSAGCPPLDFLQVRGMLKGFIDLVFRHQGRYYLLDYK 1087

Query: 885  THHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
            ++        +             +  Q  +Y   L  
Sbjct: 1088 SNWLGEDSSAYTQQAMAAAMQEHRYDLQYQLYTLALHR 1125


>gi|296130376|ref|YP_003637626.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109]
 gi|296022191|gb|ADG75427.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109]
          Length = 858

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 131/809 (16%), Positives = 238/809 (29%), Gaps = 148/809 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P       S  +      +     T+      L+ +       +  
Sbjct: 135 AAAEMRERVEQLVGPSAQRMWVSTFHSACVRILRREAATL-----GLRTSFSIYDQADSQ 189

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            LL+      +  P K    + +  K   LK++L           D F        +   
Sbjct: 190 RLLTLVARELELDP-KRYPAKALGHKISALKDELVDP--------DAFAASNGGGRSDEF 240

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            T+   +   Y++  ++   LDF+DLI+ T  LL+       +     +   H+L+DE Q
Sbjct: 241 DTVLAQVYTRYQQRLQQANALDFDDLIMRTVHLLQ---AFPQVAEHYRRRFRHVLVDEYQ 297

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L       +        L  VGD  QSIY+F GA  + ++  +     
Sbjct: 298 DTNHAQYVLVRELAGVGEATEGGVGRG-ELTVVGDADQSIYAFRGASIRNIMEFEEDYP- 355

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    + I L  ++RST  IL+  + V S     Q                     
Sbjct: 356 -------DATTILLEQNYRSTQTILSAANAVISKNSGRQAKR------------------ 390

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW       DS   PQ  ++ +  +           AR +A  I  +         G
Sbjct: 391 ---LW------TDSGAGPQIVAYVADTEHEE--------ARFVAEEIDRL---------G 424

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               ++  D+ V  R    +  +  +         +           +   IKD +A  R
Sbjct: 425 DSESVRPGDVAVFYRANAQSRALEEVL----VRVGLPYKVVGGTRFYERKEIKDAIAYLR 480

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479
            + + +DD+S   +L  P     E     +          +       +          +
Sbjct: 481 AVANPDDDVSTRRILNEPKRGLGERSEAMVAAFAERERVSFGAALARLDEVPGLGSRALT 540

Query: 480 KFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
             +     + EL  +A   + P       L          S    +    +D L E    
Sbjct: 541 GLRAFASMLDELRDLAVSGAGPAQVLGAALDRSGYLATLRSSDDPQDGSRVDNLAELHAV 600

Query: 536 TLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNE------------VRIMTVHTAKG 582
               E++     L + +  +     + +       ++            V +MT+HTAKG
Sbjct: 601 AAEFEESDPEGDLTDFLERVSLVADSDQIPVPDGADDEATVAAARDAGVVTLMTLHTAKG 660

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFL       F H                                          
Sbjct: 661 LEFPVVFLTGMEDGTFPHMRSL----------------------------------ADPD 686

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E  RL YVG+TRA  +L + + +  +             V + F     +  I    
Sbjct: 687 QLAEERRLAYVGLTRARQRLYVSRAAVRT----------AWGVPNEFPPSRFLDDIPDEL 736

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
              +    +         +              E+        P+  +  EP     ++ 
Sbjct: 737 VDWRRRESSTSRLRGSWGSGFGSGGGRSGSSWGERGGSGSSSGPVTREKREPLPRTGASF 796

Query: 763 DTKGKTNLESLLS-----DNQTFNRGLII 786
            +         LS      +  +  G ++
Sbjct: 797 GSATPRGDVPDLSVGDKVTHDAYGLGTVV 825


>gi|260914154|ref|ZP_05920627.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
 gi|260631787|gb|EEX49965.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
          Length = 725

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 186/551 (33%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L++   +L  K+ V   I  +  +   HIL+DE QDT+ IQ
Sbjct: 177 IYQIYQDTCDRAGLVDFAELLLRAYELWIKKPV---ILQRYQERFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  ++ L                +  VGD+ QSIY + GA+ + + R      K      
Sbjct: 234 YAWVKLLAGQ----------QGNVMIVGDDDQSIYGWRGAKIENIQRFLDDFPK------ 277

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL   + + +   N  G +                     LW 
Sbjct: 278 --AETIRLEQNYRSTGNILESANHLIANNTNRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             + F+ L +       A  +A  I   I              +
Sbjct: 314 ------TEGEKGDPVGIYAAFNELDE-------ALFVAAQIKQWIENGG----------K 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 351 LNDCAVLYRSNSQSRVIEEAL----IRSQIPYRIYGGMRFFERQEIKDALAYLRLIANRD 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P     +  +  +    R  + T+++  Q             +     +
Sbjct: 407 DDAAFERVINTPARGIGDRTLDILRNLTRERSVTLWQATQLAIQENLLTGRAATALLRFM 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + IH L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 467 ELIHSLQQDTAEMPLFAQTDFVIKHSGLYEMYKQEKGEKGEVRIENLEELVTATKEFVKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    L +L + L           ++ H   V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 DEAEDLSDLTAFLTHASLEAGEEQASPHQEYVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKQ 612

Query: 661 QLIICKHSNTS 671
           +L IC   +  
Sbjct: 613 KLTICYAESRR 623


>gi|330812675|ref|YP_004357137.1| putative DNA helicase II [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380783|gb|AEA72133.1| putative DNA helicase II [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 727

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 115/641 (17%), Positives = 210/641 (32%), Gaps = 124/641 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        LS  F       Q+ ++ + I +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LSQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    L   + +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYEAACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 HPG---LLAHYQKRFRHVLVDEFQDTNAVQYAWLRLLAK----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + + +   
Sbjct: 252 DQSIYGWRGAKIENIHQYSADFP--------DAEVIRLEQNYRSTAGILKAANALIANNT 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW             +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDGGEGEAINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           +   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------LARSDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R I  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPTRGIGEKTVEAIRDHARH 434

Query: 462 ETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E + +               +  +  I +L         H     ++       
Sbjct: 435 CHVSMWEAMHQLVANKGMTGRAAGALKAFMDLIEDLAAKCGEMPLHLMTQTVIEQSGLIA 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570
             +      G   ++ L+E ++     E       L  L + L              + +
Sbjct: 495 YHEAEKGEKGQARVENLEELVSAARNFESTEEDEDLTPLSAFLGHASLEAGDTQADEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                         EE  RL YVG+TRA   L++       
Sbjct: 593 ------------RLEEERRLAYVGITRAMQNLVLTYAETRR 621


>gi|310766602|gb|ADP11552.1| exonuclease V subunit beta [Erwinia sp. Ejp617]
          Length = 1178

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 137/968 (14%), Positives = 311/968 (32%), Gaps = 143/968 (14%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +   + K  W         I+          +  +    + +   +Q +  + +      
Sbjct: 228  ARISMLKQAWLAAGNLQQVIDASGVDRRSYNSKHLPNWLEKISLWAQAETQDYQLPKDLE 287

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             F  +    +    T++       L +++     E + +RD      + +     +    
Sbjct: 288  RFGQRILLEK----TKKGEPPRHPLFDQIDAFLAEPLSLRDLVIARALQQ-----VRFVT 338

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                  ++ K+ +  L F+DL+   +  L++      +   I Q     LIDE QDT   
Sbjct: 339  ------QQEKRLHGQLGFDDLLGRFDFALQQPG-GEALASAIRQRYPVALIDEFQDTDPQ 391

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+ + R+L            +   L  +GD KQ+IY+F GA+    ++ +       T  
Sbjct: 392  QYRIFRTLYR--------RQADSALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYT-- 441

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                    L  ++RS+  ++  V+++F   +N    +E     +   +   G   +VQ  
Sbjct: 442  --------LETNWRSSPAMVNAVNQLFLRQKNPFLFNEIPFINVNPAAPNHGLNFSVQ-- 491

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNG 366
                     +  P  + W    + +        +AR+ A  I   +         I + G
Sbjct: 492  --------GKVQPALQFWLQPGNGVGVSDYQQFMARQCAAEICRWLTAGQQGEALIGNAG 543

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            K+  +QA DI VLVR R +  ++      L      SV  ++R  +      ++++ L +
Sbjct: 544  KQSPVQASDITVLVRSRSEAAVVREALNAL---AIPSVYLSNRDSVFTTPEAREMLWLLQ 600

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +L+ E +      L + LF      +  +       + + +    +    +   + V+ 
Sbjct: 601  AVLAPEQERVLRSALATSLFGTDALALDALSQDERAWDALVDEFVDYRQRWLQ--RGVLP 658

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNS 543
             + EL+              +L +  G ++            + E L      L +E   
Sbjct: 659  MLRELMMKR------QIAENLLASDSGERRLTDLL------HVGELLQEASATLDSEHAL 706

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               L + + + +      +    ++ + V+I+T+H +KGL+ P+V+L    +        
Sbjct: 707  VRWLAQQVEQPDGQSSVQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVAN-------- 758

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                     N+          +        + I+  ++    E  RLLYV +TR+     
Sbjct: 759  -----FREANNGVYHDRQTFTALLDLQQSEESIELAEQERLAEDLRLLYVALTRSVFHCS 813

Query: 664  ICKHS--NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP-E 720
            +        + +K+ N       +       E      L  ++      A         +
Sbjct: 814  VGIAPLIKGARKKEGNSDLHCSALGYLVQQGEPADASGLLAALQALNGDAIALMRPAEAD 873

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKN-------------DINEPYILNPSTIDTKGK 767
             TP + ++T  Q++  + +P+ L    +               +     L+         
Sbjct: 874  ATPWQAQQTEPQILSSRTLPRSLRDNWRVTSYSGLQQHGHSIALELLPRLDVDAAGEASN 933

Query: 768  TNLES--LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
              +      +  +    G  +H L + +        +         +++    +    + 
Sbjct: 934  EPVPQLTPHTFPRGAGPGTFLHGLFETLEFTTPLDEEWLAQQL---SSQGLGDEWQPVMR 990

Query: 826  LSITRLLENPM------MTTAMSCDSYSE----VSVSGKINCPKKDIIIS---------- 865
              + R+L  P+      +    +    +E    + +S  +     D ++           
Sbjct: 991  DWVERILHTPLNETGVSLYQLPAQARKAELQFYLPISRLLTAEALDRVVRQDPLSQPCPP 1050

Query: 866  -----------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLS 905
                       G ID +   Q   ++ +YK++        +             +  Q  
Sbjct: 1051 LDFHQVQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTREAMAQAMQAHRYDLQYQ 1110

Query: 906  IYEKILKD 913
            +Y   L  
Sbjct: 1111 LYTLALHR 1118


>gi|160889899|ref|ZP_02070902.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC 8492]
 gi|317478904|ref|ZP_07938052.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
 gi|156860891|gb|EDO54322.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC 8492]
 gi|316904938|gb|EFV26744.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
          Length = 784

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/664 (14%), Positives = 199/664 (29%), Gaps = 123/664 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y E  ++   +DF+DL+  T  L +       +  +  ++  +IL+D
Sbjct: 169 AAKVPALRDIYQRYWERCRRADAMDFDDLLFYTFLLFRDHPE---VLARYQEQFRYILVD 225

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  L ++           + +  VGD+ QSIYSF GA+   +L   ++
Sbjct: 226 EYQDTNFAQHSIVLQLAKN----------HQHVCVVGDDAQSIYSFRGADIDNILYFTKV 275

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    +                     
Sbjct: 276 YP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNQ--------------------- 306

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                  W+        +   +       +  + +          +   I+ +       
Sbjct: 307 -------WQIRKEVFSEKEKGEAIGVYQAYSDVEEGDI-------VVNKIAELRRE---- 348

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                +     D  +L R    + +     R       +               IKD++A
Sbjct: 349 -----KRYAYSDFAILYRTNAQSRIFEEAMR----KRSMPYRIYGGLSFYQRKEIKDVIA 399

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVY-------EYIQKFAN 475
             R I++  D+ +F  ++  P     +  + KI         +++        Y   F  
Sbjct: 400 YFRLIVNPNDEEAFKRIINYPARGIGDTTVGKIIAAATGHNVSLWTVLCEPLAYGLNFNK 459

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
             + K Q   + I   I  A   + ++    I+               E     + ++E 
Sbjct: 460 GTVGKLQAFRELISAFITDAAEKNAYEIGADIIRQSGIINDVCQDNSPENLSRKENIEEL 519

Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N           E      L + +SE+             +  ++ +MTVH+AKGLE  
Sbjct: 520 VNGMSDFCAQRQEEGKPNVLLGDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEFK 578

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 579 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 604

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   +          K    +    + D      R+ +        +
Sbjct: 605 ERRLFYVAITRAEEHCFLSYAKTRFRYGKMEFGSPSRFLKDIDIRFLRLPQDAGMFRRVE 664

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           +E  A+     +      +RE+      +   +  K              + PS      
Sbjct: 665 EEAAAFRR--ENARGFAPDREDAPYGGKERVSVRPKQQIIAPTVPRNLKRVAPSANTAST 722

Query: 767 KTNL 770
             + 
Sbjct: 723 SPSA 726


>gi|114330786|ref|YP_747008.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114307800|gb|ABI59043.1| ATP-dependent DNA helicase UvrD [Nitrosomonas eutropha C91]
          Length = 748

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/584 (15%), Positives = 182/584 (31%), Gaps = 116/584 (19%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           ++ Q      ++         +  +           YE    +   +DF +L++   +LL
Sbjct: 138 RQLQWFINNAKEEGLRASQVDTRGSFNRTLAECYQVYEAVSMRGGTVDFAELLLRCYELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            + ++   +R        HIL+DE QDT+ +Q++ I+ L        +       +FAVG
Sbjct: 198 SRNEI---LRDHYRGRFEHILVDEFQDTNRLQYQWIKLLAG------SGSQQHAAIFAVG 248

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   ++              II L  ++RS  +IL   + +   
Sbjct: 249 DDDQSIYAFRGAHVGNMRDLEKDF--------SVPKIIRLEQNYRSQGNILDAANALIEN 300

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                     LW        +        + +  D      
Sbjct: 301 NKGRLGKN---------------------LW------TAAGKGESVRIYYAATDVDETS- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                   I   I  +              +   +I +L R    + ++         + 
Sbjct: 333 -------FIVDEIKALHAEG----------LSLSEIALLYRSNAQSRVLEHGL----FNA 371

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            IS          D   +K  +A  R + S +DD + + ++  P        + ++  Q 
Sbjct: 372 SISYRVYGGMRFFDRQEVKHALAYLRLVASPDDDNALLRVINFPPRGIGARTLEQLQDQA 431

Query: 461 HE-TETVYEYIQK----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                ++++   K            +         +  +  +    +     +    ++ 
Sbjct: 432 EILGTSLWQAALKVCEGRKAVTTRGDQPGRGIAGFVNLVLSMQQACEGQPLPEIIRRVVD 491

Query: 510 AKKGRQQFISRF--GNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS 566
                  + +     NE ++ L E +N       +    SL   ++              
Sbjct: 492 QSGLVAHYQAEREGNNERLENLKELVNAATSFVHEAEDDSLTAFLAHASLEGGE--HQAE 549

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
              + V++MTVH AKGLE   VF+      +F H++ +                      
Sbjct: 550 GYQDAVQLMTVHAAKGLEFHSVFISGLEEGLFPHENSRNEPNG----------------- 592

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                             EE  RL+YV MTRA  +L +    + 
Sbjct: 593 -----------------LEEERRLMYVAMTRARQRLYLSYAESR 619


>gi|302340417|ref|YP_003805623.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637602|gb|ADK83029.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 1137

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 155/986 (15%), Positives = 295/986 (29%), Gaps = 99/986 (10%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVS--LSMETGNPTILKKAQTL-------QQASQTQ 60
             E      + L       +S ++      L ++ G    +  A  L       +      
Sbjct: 174  GELLARQEEHLRSEIPRLLSGLDALSQQILRLDPGAHKQIADAHALFSEHDIGELFEAGV 233

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +  S+L S        P+  I   E N  + + ++ ++  ++          T   +
Sbjct: 234  DRPDDLSVLLSQLTADLKKPRGRI--AEGNVDALEYRDLVENWREGAGLAVSAAETLLAW 291

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                    +     + YE+ K+   ++ F D+      LL++       R        +I
Sbjct: 292  PLFQELGEVIDRFRSSYEQEKRMTGIVTFRDVPAMAVRLLEEDPE---FRSSWKHAFRYI 348

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-----PRTLFAVGDEKQSIYSFHGAEPK 235
            +IDE QD + +Q +++  L E     +          P  LF VGDEKQSIY F GAE  
Sbjct: 349  MIDEFQDNNDLQRKLLYLLAERPERMEKGVPRADELVPGKLFFVGDEKQSIYRFRGAEVG 408

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
               R                  ++L  ++RS   ++   +  F         S ++    
Sbjct: 409  VFKRLGEEL------VSAGGVSLDLSRNYRSEPALIGFFNDFFPRVFADADRSYEAR--- 459

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA-SILARRIAYTIS 354
                                 +     +P+   +     S  +   A    A  +A  I 
Sbjct: 460  --------------FRPLSSREKTEGVSPRISLFYYPGSSEEEALPAPEAEAWYLARRIR 505

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
             M+    +   G        DI +L+R   +        R L     I         L  
Sbjct: 506  EMVEKKELTIAGG--AADYGDIALLMRSSGNQISFERAFRRL----GIPYTVQSARALFL 559

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEYIQ 471
                 D   L +  L  ED L++  +L+SP    S+D I  +  +  E        +   
Sbjct: 560  EAPASDFYQLLQLALYPEDRLAYFSLLRSPFAALSDDVIAAVMLREQEIHAAPFALDPDD 619

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLD 530
                    +++   +    +   A      +    +      R   +      V  +  D
Sbjct: 620  PILGDEGERYRLAGQAWRMVRQEADRVPISELIRRLWTGFGYRYAVLRNPDYHVYLEYYD 679

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLES 585
                F L  ++    +L   +  L +                    VRIM++H +KGL+ 
Sbjct: 680  YLFEFALLADRRG-ENLVTFLRFLRKNLGKYEKVEEVEPSRQEERGVRIMSIHKSKGLQF 738

Query: 586  PVVFLVDTGS-QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVVF+   GS     H+      + P L      P    +S   N      ++   +   
Sbjct: 739  PVVFVAGCGSTGRREHEGASPFQLHPELGVTLSAPSRERKSGKANFFYRQGLELENEQEV 798

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             E  RLLYV  TRA   L    +   SN K      +  + +          + +   + 
Sbjct: 799  AELKRLLYVAATRAECHLFFSGYHGRSNRKMDGLGRFALLNWIGKGFGAESDQWECDPAF 858

Query: 705  NKDEWIAYEWSTHHPENTPL--EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-- 760
                 I    +    E   +   +   + +  +E +  + L  P   +   P +++ +  
Sbjct: 859  ESHIEIIPPVTIEEIERNVVSKRQGPPLPEAAEEYRKAEILAFPAPVEAFSPSLVSAAIS 918

Query: 761  ----------------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-----IFTLPEH 799
                            +           L  + +    G + H+L++      +      
Sbjct: 919  RLSVPQMADLKGQRDLSASDSELPVDRYLGGEERITAFGSLCHRLIEEGITQGVVKGDVR 978

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
                   +   K + L            +             +  S SEV+    +    
Sbjct: 979  DLPTPFRALSDKASSLILDTAVDLARSFMDAPFGRLARQEQQAGGSVSEVAF---LFLTP 1035

Query: 860  KDIIISGRIDQISI---SQQ-NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
                + G ID +            + ++K+           P  H+ QL++Y +      
Sbjct: 1036 AGRFVDGSIDLLLERGPDGGAEAVVVDFKSDRGDD------PEHHLPQLAMYREAASHL- 1088

Query: 916  PNKSLVCLLIYVSEPKVFIIPQNKLN 941
              K +   L Y+ + K   I  + L+
Sbjct: 1089 TKKPVRTFLWYLRKKKAVEIETDGLD 1114


>gi|307257392|ref|ZP_07539162.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306864242|gb|EFM96155.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 732

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 112/551 (20%), Positives = 190/551 (34%), Gaps = 121/551 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L + +     I  +  Q    ILIDE QDT+ I
Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQRFQQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L                +  VGD+ QSIY + GA+ + + R     QK     
Sbjct: 233 QYDLIRLLAG----------KTGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ S  E+  G +                     LW
Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    Q +         F+ L +       AR +A  I      +           
Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++  P     E  +  I    R+   T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINIPPRGIGERTLDTIRQITRNRQITLWQAIQVAVQEEQLSGRAASALLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ I+ L    +     +    ++      + +    G +    I+ L+E +  T +   
Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    S L   ++             S + + V +MT+H+AKGLE P VF+V     +
Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGET--QASPHQDYVELMTLHSAKGLEFPRVFIVGVEEGI 583

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          +   +E  RL YVG+TR
Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608

Query: 658 ASDQLIICKHS 668
           A  +L I    
Sbjct: 609 AKKKLTISYAE 619


>gi|309811913|ref|ZP_07705685.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185]
 gi|308434125|gb|EFP57985.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185]
          Length = 897

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 120/812 (14%), Positives = 244/812 (30%), Gaps = 144/812 (17%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + +        VS  +      +      +      L+         +  
Sbjct: 164 AAAEMRERVEQLVGGAANAMWVSTFHSACVRILRREAKHV-----GLRSTFSIYDAADSQ 218

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + +  +LK +L  +++   +                 
Sbjct: 219 RLMAMVTRDLDLDP-KRYPPKSFSFQVSNLKNELIDAEEAAKRAETDQE----------- 266

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y++  ++   LDF+D+I+ T  +L+       +     +   HIL+DE Q
Sbjct: 267 -RKVAEAYRLYQQRLRQANALDFDDIIMTTVTILQ---AFPQVAEHYRRRFRHILVDEYQ 322

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSP-------------RTLFAVGDEKQSIYSFHGAE 233
           DT+  Q+ ++R L           S                 L  VGD  QSIY+F GA 
Sbjct: 323 DTNHAQYVLVRELAGGEHASGGMASQDAEGDSRATSAVPMADLCVVGDADQSIYAFRGAT 382

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            + ++  +              + I L  ++RST +IL   + V       +  +  S  
Sbjct: 383 IRNIVEFEEDYPN--------ATTILLEQNYRSTQNILGAANSVIERNPERRKKNLWS-- 432

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                                    D     +   + +         S    A  +A TI
Sbjct: 433 -------------------------DQGDGEKIVGYVA--------DSEHDEAAFVARTI 459

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +         G    ++ KD+ V  R    +  +  +         +           
Sbjct: 460 DKL---------GDDHGVKPKDVAVFYRTNAQSRALEEVF----VRVGLPYKVVGGTRFY 506

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK 472
           +   IKD +A  R I +  D ++   +L +P     +     +      E  T  E + +
Sbjct: 507 ERKEIKDALAYLRVISNPADTVNLRRILNTPKRGIGDRAEACLGALAERERITFIEALAR 566

Query: 473 ------FANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE- 524
                  A   +S  +   + +  L    +  S        IL      ++  +    + 
Sbjct: 567 ADEAPGIATRSVSAVKGFTEILESLRQTRESGSGVGPLIEAILERTGYLKELRTSKDPQD 626

Query: 525 --VIDVLDEFLNFTLRNEQNSY-SSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTA 580
              I+ L E +      + N   ++L++ + ++            + +   V +MT+HTA
Sbjct: 627 ETRIENLAELVAVANEFDDNYPGATLEDFLEQVSLVADADEIPKDAEDQGVVTLMTLHTA 686

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE PVVFL       F H                                        
Sbjct: 687 KGLEFPVVFLTGMEDGTFPHMRALG----------------------------------D 712

Query: 641 KSTQEEYNRLLYVGMTRASDQLIIC--KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
               EE  RL YVG+TRA ++L +      +     + N  + +             +  
Sbjct: 713 TKELEEERRLAYVGITRARERLHLSRAAVRSAWGAPQYNPPSRFLGEIPEEFVHWEREAT 772

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
              +S  +              +     ++    +        ++ S  ++     +   
Sbjct: 773 AFASSQPRGYAAFGSGGGSPYGSGGSRHDDDGPVIGRGSAPVARMSSSGRSSGAGSFSTT 832

Query: 759 PSTIDTKGKTNLESLLSDN----QTFNRGLII 786
            ++   +G   + +L + +     +F  G ++
Sbjct: 833 KNSAVGRGMREIPNLDAGDKVTHDSFGLGTVV 864


>gi|309809879|ref|ZP_07703729.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169831|gb|EFO71874.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners SPIN
           2503V10-D]
          Length = 779

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 133/804 (16%), Positives = 258/804 (32%), Gaps = 110/804 (13%)

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD KQSIY F  A+P   L++         +       I L  +FRS+ ++  +V+ +
Sbjct: 1   MVGDVKQSIYGFRQAQPHLFLQKYHQFSNEVQS-----ERIILSDNFRSSKNVTQIVNNI 55

Query: 278 FSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           F     EN  G++      +++ +      +GT   +    S  D      +E   +  D
Sbjct: 56  FDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEVNDLD 115

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391
            +            +   I  +   D    +     KR I+  DI +L R + +      
Sbjct: 116 EIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE----NL 161

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                  + K+ +  +D         +  +    + I + + D+  V +++SPL+ F+E 
Sbjct: 162 KLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEP 221

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDFFTLI 507
           +  KI      + + Y+ I  +      +      + I  +    + +      +    I
Sbjct: 222 EFAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCNNFINELSHFRNFSIDHRISELICDI 280

Query: 508 LGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTI 561
                  +       G +    L+         E + +  L + I+ +++        + 
Sbjct: 281 FQNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQ 340

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             +     + +++MT+H +KGLE P+VFL+    +           I        G+ I 
Sbjct: 341 PLSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLGLTIT 398

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR-- 679
               +  + + S      K    EE  R+LYVG+TRA  +LI+       N     Q   
Sbjct: 399 TADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANENIIPDFQNKL 458

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT----------------- 722
             ++ +     ++       L   +  ++      S    E                   
Sbjct: 459 DAHNQLPFIDKSNAISPMSFLGPELFANQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQA 518

Query: 723 ----------------------------PLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                                       P +   T        +I K    P   + +  
Sbjct: 519 SVKISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNS 578

Query: 755 YILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809
            ++N +       ++  + L          G  +H LLQ              + I +  
Sbjct: 579 KLINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLV 638

Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINC 857
            +N          +L  +            A    S + Y E+  S            N 
Sbjct: 639 LQN--KLNPDIIPHLSKNDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFND 696

Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKD 913
               I++ G ID   I    I +F+YKT       +E    ++   +  QLS+Y   L +
Sbjct: 697 VNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNN 756

Query: 914 SYPNKSLVC-LLIYVSEPKVFIIP 936
              +K +    LI +S  K+  + 
Sbjct: 757 L-SDKKVKAKYLILLSINKIVKVD 779


>gi|319638964|ref|ZP_07993722.1| DNA helicase II [Neisseria mucosa C102]
 gi|317399868|gb|EFV80531.1| DNA helicase II [Neisseria mucosa C102]
          Length = 735

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/582 (17%), Positives = 193/582 (33%), Gaps = 118/582 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++  ++  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +  +             +FAVG
Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGNNAA----------VFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A+ I      +                  +I VL R    + +I           
Sbjct: 333 -----AQFIVDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IK  +A  R  ++ +DD + + ++  P        I  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHTLAYLRLAVNPDDDNALLRVINFPPRGIGARTIENLQTAS 433

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E           A    +K    ++ I  L +        +    IL      + + ++
Sbjct: 434 NEQGITLWQAACNAGAKAAKIAAFVRLIEALRNQVGQMPLSEIIVGILKDSGLTEYYRTQ 493

Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566
            G   + +D LDE +N  +    E +++ +L E         +++ L        +    
Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQAG 553

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A    V++MTVH +KGLE   VFL       F  +                         
Sbjct: 554 AGEKAVQLMTVHASKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                        ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|332139606|ref|YP_004425344.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549628|gb|AEA96346.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype']
          Length = 723

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 114/704 (16%), Positives = 215/704 (30%), Gaps = 138/704 (19%)

Query: 1   LKNRF---GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57
           L N     G    ++  L+++  W +    ++  +             +  + ++L   S
Sbjct: 22  LSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILAVTFTNKAAKEMRGRIESLMGRS 81

Query: 58  QTQCIEERFSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR- 113
                   F  L+   L     +    +N    + + +   ++  LK    +      R 
Sbjct: 82  LHNMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLIRRILKAMNLDEKHWAPRQ 141

Query: 114 ------------FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                            +           + + A Y++A  ++ ++DF +L++  ++L  
Sbjct: 142 IQWYINGNKDEGLRPQHIETHGDHIQKTMREVYAAYQDACDRSGLVDFAELLLRAHELWA 201

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           K      +     +    +L+DE QDT+ IQ+  +R L                +  VGD
Sbjct: 202 KNPE---VLAHYQRRFRAVLVDEFQDTNNIQYAWLRMLCS---------GGDNNIMIVGD 249

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GA    +    +   K         + I L  ++RST +IL   + V    
Sbjct: 250 DDQSIYGWRGANVDNIQHFLKDFNK--------PNTIRLEQNYRSTGNILKAANTVIDNN 301

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
               G                      +LW             +  S  + F+ L +   
Sbjct: 302 TGRLGK---------------------ELW-------TEDAQGELISVYAGFNELDE--- 330

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR I   I + +                 D  +L R    + ++            
Sbjct: 331 ----ARFIVSKIKDWLNQGNAL----------SDTAILYRNNAQSRVLEEAL----LHEG 372

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          +   IKD +   R +    DD +F  ++ +P     E  + ++    R
Sbjct: 373 LAYRIYGGLRFFERQEIKDALGYLRMVSHPHDDAAFERVVNTPSRGIGEKTLSQVRDAAR 432

Query: 461 HETETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               ++++  Q   N G  K       Q  +  I EL                +      
Sbjct: 433 MHNCSMWQACQLLINEGGFKGRALNAMQSFVLLITELEQTTLDEPLDQQADKAIKQSGLY 492

Query: 515 QQFISRFGNEVI---DVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSA 567
             + +  G +     + L+E +          E    + L   ++               
Sbjct: 493 AMYQAERGEKAQARLENLEELVTACKTFIVPEEAEEMTPLAAFLAHASLEAGET--QADK 550

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           + + V++MT+HTAKGLE P+VFL      +F  +                          
Sbjct: 551 DQDAVQMMTIHTAKGLEFPLVFLAGVEEGMFPSQMTNDEPG------------------- 591

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                            EE  RL YVGMTRA  +L I    +  
Sbjct: 592 ---------------RMEEERRLCYVGMTRAMQKLYITYAESRR 620


>gi|300932549|ref|ZP_07147805.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
           DSM 45100]
          Length = 864

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 114/757 (15%), Positives = 215/757 (28%), Gaps = 173/757 (22%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +   + P                      T       + +A+          
Sbjct: 108 AAGEMRERVVDLVGPQAEKMW--------------VSTFHSMCVRILRANANLVPG---- 149

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKE-----KLKKSQDEFIKIRDRFNTYKMFKS 122
            L++ F        K +IT  I     DLKE      L    +   ++          ++
Sbjct: 150 -LNTNFTIYDSDDSKRLITMVIKDAGMDLKEFAPRSVLSVISNWKNELVGPEAALAEAQA 208

Query: 123 TLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                T+    L A Y+   +    +DF+DLI     +L+       +     +   H+L
Sbjct: 209 DSNPHTINIATLYATYQRRLRAANAVDFDDLIGEVVGILRSNPA---VTEHYRRRFRHVL 265

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+  Q+ ++ +L         T      L  VGD  QSIY+F GA  + +   +
Sbjct: 266 VDEYQDTNHAQYVLVSTLV-------GTGEEAGELCVVGDADQSIYAFRGATIRNIEEFE 318

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R             + I L  ++RST  ILT  ++V    +  +                
Sbjct: 319 RDYPN--------ATTILLEQNYRSTQTILTAANRVIERNQGRREKK------------- 357

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW           + ++       +   +       A  +   I +++    
Sbjct: 358 --------LW-------TDLGDGERIGGYVADNEHDE-------ANFVVEQIDDLVDN-- 393

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                        DI V+ R    +  I  +         +           +   I+D+
Sbjct: 394 -------HGYSYSDIAVMYRTNSASRAIEDVL----VRSGLPYKVVGGTRFYERREIRDI 442

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN----- 475
           +A  + I +  D ++   ++ +P     +  I ++      +     + +   A      
Sbjct: 443 VAYLKVIDNPNDTVALRRIINTPRRGIGDRAIAQVTVHTEAQGIGFADALVDAAQGRVPL 502

Query: 476 ---CGISKFQHVIKYIHELIHIAQFC-------------SPHDFFTLILGAKKGRQQFIS 519
               G +     ++ +  L   A+                       +L     + +   
Sbjct: 503 LSGRGKNAIAGFLELMEALRAEAEASELKASDGSGLDVRDLGRIVGTVLDMTGYKAELEK 562

Query: 520 RFGNE---VIDVLDEFLNFTLRNEQN----------------------SYSSLQELISEL 554
               +    +D L+E ++      Q                          S+Q  +  +
Sbjct: 563 SNDPQDGTRLDNLNELISVGHEFSQEAANQRAYIEWSEAEQQLAEGEAPVGSIQAFLERV 622

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                  +       N V +MT+HTAKGLE PVVFL       F H              
Sbjct: 623 SLVADADQIPVDQ-QNMVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMRALGDP------- 674

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                          E  RL YVG+TRA  +L + +    S   
Sbjct: 675 ---------------------------RELNEERRLAYVGITRAKQRLFLSRAITRSGWG 707

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +         + +         + + +   +   W  
Sbjct: 708 QPVNNPPSRFLSEVPDELVEWIREEPSWGGSSSAWNG 744


>gi|254362319|ref|ZP_04978431.1| DNA helicase II [Mannheimia haemolytica PHL213]
 gi|153093899|gb|EDN74827.1| DNA helicase II [Mannheimia haemolytica PHL213]
          Length = 732

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 111/580 (19%), Positives = 203/580 (35%), Gaps = 117/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L K     + I  +  Q    ILIDE QDT+ I
Sbjct: 176 EIYQIYQDACDRAGLLDFAELLIRAYELFKT---KSTILQRYQQRFQQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L  D             +  VGD+ QSIY + GA+ + + R            
Sbjct: 233 QYDLIRLLAGDV----------GKVMIVGDDDQSIYGWRGAQVENIQRFLNDYDN----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL+  +++ +  +N  G +                     LW
Sbjct: 278 ---AQTIRLEQNYRSTGNILSCANELIANNDNRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +       F+ L +       AR +A  I      +           
Sbjct: 314 -------TDSGDGEPVDIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --AECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     +  +  +    R    T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQEEQLSGRATSSLLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ I+ L    +  S  +    ++      + +    G +    I+ L+E +  T +  +
Sbjct: 466 VELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFVK 525

Query: 542 -NSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +    L +L + L            S + + V +MT+H+AKGLE P VF+V     +F 
Sbjct: 526 PDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSAKGLEFPRVFIVGVEEGIFP 585

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                    +   +E  RL YVG+TRA 
Sbjct: 586 SGMSFD-----------------------------------EGRLQEERRLAYVGITRAK 610

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +L I    +     K  +      + +      R  +++
Sbjct: 611 KKLTISYAESRRLYGKEERHVPSRFIAELPEEHIREVRLR 650


>gi|259909490|ref|YP_002649846.1| exonuclease V subunit beta [Erwinia pyrifoliae Ep1/96]
 gi|224965112|emb|CAX56644.1| Exodeoxyribonuclease V beta chain [Erwinia pyrifoliae Ep1/96]
 gi|283479564|emb|CAY75480.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Erwinia pyrifoliae DSM 12163]
          Length = 1178

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 136/968 (14%), Positives = 311/968 (32%), Gaps = 143/968 (14%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +   + K  W         I+          +  +    + +   +Q +  + +      
Sbjct: 228  ARISMLKQAWLAAGNLQQVIDASGVDRRSYNSKHLPNWLEKISLWAQAETQDYQLPKDLE 287

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             F  +    +    T++       L +++     E + +RD      + +     +    
Sbjct: 288  RFGQRILLEK----TKKGEPPRHPLFDQIDAFLAEPLSLRDLVIARALQQ-----VRFVT 338

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                  ++ K+ +  L F+DL+   +  L++      +   I Q     LIDE QDT   
Sbjct: 339  ------QQEKRLHGQLGFDDLLGRFDFALQQPG-GEALASAIRQRYPVALIDEFQDTDPQ 391

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+ + R+L            +   L  +GD KQ+IY+F GA+    ++ +       T  
Sbjct: 392  QYRIFRTLYR--------RQADSALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYT-- 441

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                    L  ++RS+  ++  V+++F   +N    +E     +   +   G   +VQ  
Sbjct: 442  --------LETNWRSSPAMVNAVNQLFLRQKNPFLFNEIPFINVNPAAPNHGLNFSVQ-- 491

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNG 366
                     +  P  + W    + +        +AR+ A  I   +         I + G
Sbjct: 492  --------GKVQPALQFWLQPGNGVGVSDYQQFMARQCAAEICRWLTAGQQGEALIGNTG 543

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            K+  +QA DI VLVR R +  ++      L      SV  ++R  +      ++++ L +
Sbjct: 544  KQSPVQASDITVLVRSRSEAAVVREALYAL---AIPSVYLSNRDSVFTTPEAREMLWLLQ 600

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +L+ E +      L + LF      +  +       + + +    +    +   + V+ 
Sbjct: 601  AVLAPEQERVLRSALATSLFGTDALALDALSQDERAWDALVDEFVDYRQRWLQ--RGVLP 658

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNS 543
             + EL+              +L +  G ++            + E L      L +E   
Sbjct: 659  MLRELMMKR------QIAENLLASDNGERRLTDLL------HVGELLQEASATLDSEHAL 706

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               L + + + +      +    ++ + V+I+T+H +KGL+ P+V+L    +        
Sbjct: 707  VRWLAQQVEQPDGQSSVQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVAN-------- 758

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                     ++          +        + I+  ++    E  RLLYV +TR+     
Sbjct: 759  -----FREADNGVYHDRQTFTALLDLQQSEESIELAEQERLAEDLRLLYVALTRSVFHCS 813

Query: 664  ICKHS--NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP-E 720
            +        + +K+ N       +       E      L  ++      A         +
Sbjct: 814  VGIAPLIKGARKKEGNSDLHCSALGYLVQQGEPADASGLLAALQALNGDAIALMRPAEAD 873

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKN-------------DINEPYILNPSTIDTKGK 767
             TP + ++T  Q++  + +P+ L    +               +     L+         
Sbjct: 874  ATPWQAQQTEPQILSSRTLPRSLRDNWRVTSYSGLQQHGHSIALELLPRLDVDAAGEASN 933

Query: 768  TNLES--LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
              +      +  +    G  +H L + +        +         +++    +    + 
Sbjct: 934  EPVPQLTPHTFPRGAGPGTFLHGLFETLEFTTPLDEEWLAQQL---SSQGLGDEWQPVMR 990

Query: 826  LSITRLLENPM------MTTAMSCDSYSE----VSVSGKINCPKKDIIIS---------- 865
              + R+L  P+      +    +    +E    + +S  +     D ++           
Sbjct: 991  DWVERILHTPLNETGVSLYQLPAQARKAELQFYLPISRLLTAEALDRVVRQDPLSQPCPP 1050

Query: 866  -----------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLS 905
                       G ID +   Q   ++ +YK++        +             +  Q  
Sbjct: 1051 LDFHQVQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTREAMAQAMQAHRYDLQYQ 1110

Query: 906  IYEKILKD 913
            +Y   L  
Sbjct: 1111 LYTLALHR 1118


>gi|254230196|ref|ZP_04923589.1| DNA helicase II [Vibrio sp. Ex25]
 gi|262392860|ref|YP_003284714.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25]
 gi|151937281|gb|EDN56146.1| DNA helicase II [Vibrio sp. Ex25]
 gi|262336454|gb|ACY50249.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25]
          Length = 724

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 97/549 (17%), Positives = 180/549 (32%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+      ++R        HIL+DE QDT+ I
Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +            
Sbjct: 230 QYAWLRMMAG----------PDCHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I                  
Sbjct: 311 -------TDGNVGEPISVYSAYNELDE-------ARFAVNKIKEWQENGGAL-------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   I+D ++  R + ++
Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIRDALSYLRLMANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T++E      +               
Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRRAARDRGCTMWEASLAMLDEQVLTGRAAGALSRF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ I  L         H+    ++        +    G +    I+ L+E +  T + E+
Sbjct: 463 VELITALEDDTLEMPLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 523 PEEAEEMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 609 QKLYITYAE 617


>gi|325137063|gb|EGC59659.1| DNA helicase II [Neisseria meningitidis M0579]
 gi|325202934|gb|ADY98388.1| DNA helicase II [Neisseria meningitidis M01-240149]
 gi|325207267|gb|ADZ02719.1| DNA helicase II [Neisseria meningitidis NZ-05/33]
          Length = 735

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 187/550 (34%), Gaps = 120/550 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHINAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D + + ++  P        I  + T    +  T+++     A    +K    ++ I  L 
Sbjct: 407 DNALLRVINFPPRGIGARTIENLQTASNEQGITLWQAACN-AGAKATKVAAFVRLIEALR 465

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQ 548
           +        +    IL      + + ++ G   + +D LDE +N  +    E +++  L 
Sbjct: 466 NQVGQMPLPEIIVGILKDSGLTEHYKTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILP 525

Query: 549 E---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E         +++ L        +         V++MTVH AKGLE   VFL       F
Sbjct: 526 ENISDDPAFPILAFLSNATLESGENQAGVGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRF 585

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                      ++   EE  RL+YV +TRA
Sbjct: 586 PSEMSL----------------------------------AERGGLEEERRLMYVAITRA 611

Query: 659 SDQLIICKHS 668
             +L I    
Sbjct: 612 RKRLYITMAQ 621


>gi|187477915|ref|YP_785939.1| DNA helicase II [Bordetella avium 197N]
 gi|115422501|emb|CAJ49026.1| DNA helicase II [Bordetella avium 197N]
          Length = 750

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 103/664 (15%), Positives = 212/664 (31%), Gaps = 134/664 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     +    K ++  +            +  Q      ++
Sbjct: 94  LRAHHRDAGLPQAFQILDTA---DQLAAIKRLLKAQGIDDEKYPP---RDVQRFINGSKE 147

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   ++  A       +   YE   ++  V+DF +L++   +LL +    A +R  
Sbjct: 148 DGLRPAEVEAWDAHRRKLVEIYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 204

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   HIL+DE QDT+ +Q++ +R L                +FAVGD+ QSIY+F GA
Sbjct: 205 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------GGAAIFAVGDDDQSIYAFRGA 254

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R   +          +I L  ++RS   IL   + +        G +  + 
Sbjct: 255 NVGNMADFERDYAQ--------GRVIRLEQNYRSFGHILDAANALIGHNSGRLGKNLWTD 306

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                        G  +L   +                       ++ S  + A+ +   
Sbjct: 307 Q------------GEGELIRII-----------------------EQPSDGMEAQWVVDE 331

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I                 +I VL R    + ++            ++         
Sbjct: 332 IRSLINEGRAR----------SEIAVLYRSNAQSRVLEHAL----FSAGVAYKVYGGLRF 377

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQ 471
            +   IK  +A  R I + +DD S + ++  P        +  +      ++ +++  + 
Sbjct: 378 FERQEIKHALAYLRLIANPDDDTSLMRVVNFPTRGIGARTLELLADAASSSQTSLFGAVA 437

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530
           +    G +      + I  L    +     +    I+     +  + + R G E ++ L+
Sbjct: 438 RVPGKGGANLAQFAQLIGRLAAETRDLPLPEMVGHIIEESGLKAHYQAEREGAERLENLN 497

Query: 531 EFLNFTLRNEQNS---------------------YSSLQELISELEQYPPTI-KRAHSAN 568
           E +                                 S+  L + L             A 
Sbjct: 498 ELVTAAAVFAAEENFDSLPAGVALQTDAAEGEPPVPSMSPLAAFLSHAALEAGDNQAQAG 557

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V++MTVH AKGLE   VF+      +F H++                          
Sbjct: 558 QDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENSILEP--------------------- 596

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                        +  EE  RL+YV +TRA ++L +    +     ++        + + 
Sbjct: 597 -------------AGLEEERRLMYVAITRARERLYLTLAQSRMLHGQTRYAMRSRFLEEI 643

Query: 689 FHND 692
             + 
Sbjct: 644 PESH 647


>gi|254470528|ref|ZP_05083932.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062]
 gi|211960839|gb|EEA96035.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062]
          Length = 812

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/547 (17%), Positives = 178/547 (32%), Gaps = 117/547 (21%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L + L   Y+E        DF DL+++   + K+ D    +         ++L+DE QDT
Sbjct: 211 LGRKLYQTYQERLSILNACDFGDLLLHCITIFKEHDD---VLKSFQSRFRYMLVDEYQDT 267

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           ++ Q+  +R L +              +  VGD+ QSIY + GAE   +LR ++      
Sbjct: 268 NIAQYMWLRLLAQ----------GNSNVACVGDDDQSIYGWRGAEVDNILRFEQDFP--- 314

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  +++ L  ++RST+ IL+    + +  +   G +  +                 
Sbjct: 315 -----GATVVRLERNYRSTSHILSAASHLIAHNQGRLGKTLFTDQV-------------- 355

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                         +  +    S +DS  +       AR I   I  +            
Sbjct: 356 -----------GSEDEDKVQVASAWDSQEE-------ARSIGDEIEALQNHGHSL----- 392

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 ++ +LVR              L     ++          + + I+D +A  R +
Sbjct: 393 -----NEMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDALAYFRCV 443

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKF 481
           +   DDL+F  ++ +P     E  +  +    R     +           +      +  
Sbjct: 444 MQPSDDLAFERIVNTPKRGLGEATLKIVHAYARERAIPLMIAAGELVQTNELRPKARAAL 503

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
             V+       +  +  S  +   +IL      Q +      E    +D L E +     
Sbjct: 504 ADVLGMFENWRNQVETMSHTELAEIILDESGYTQMWRQDRSAEAPGRLDNLKELIRSMEE 563

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E         +   LE     + +      + V IMT+H+AKGLE   VFL      VF
Sbjct: 564 FES--------MAGFLEHISLVMDKDSDVEEDAVSIMTLHSAKGLEFDTVFLPGWEEGVF 615

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            ++                                  +    ++  EE  RL YVG+TR 
Sbjct: 616 PNQR--------------------------------ALDETGQAGLEEERRLAYVGLTRG 643

Query: 659 SDQLIIC 665
             ++ + 
Sbjct: 644 RKRVKVW 650


>gi|95929583|ref|ZP_01312325.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
 gi|95134280|gb|EAT15937.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
          Length = 1101

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 146/953 (15%), Positives = 286/953 (30%), Gaps = 129/953 (13%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER---FSLL 69
             E + +    +P     ++      + E         +  LQ     +   E    +  L
Sbjct: 226  AEHLAEAARAVPLACRDEVMALGRFAAEQLADEQRPISHLLQAECFPEADLEALPVWRGL 285

Query: 70   SSFFLTQKFTPQKNI-----ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY------- 117
            +   LT +   +K                  +K+++ +          +           
Sbjct: 286  AELLLTSEGQWRKACNKNIGFPAGKKDPFASMKQRMLELLKRVSDEDCQALAQVVSLPSG 345

Query: 118  ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                + +++  A L +   L A      +    +DF ++ +     L            +
Sbjct: 346  GYSDQQWQTLDALLDVLPALVAQLWWVFRHCAEVDFTEVALKARQALVDSGQPTEQLLAL 405

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            D++I+HIL+DE QDTS +Q++++ +L   +          RTLF VGD  QSIY F  AE
Sbjct: 406  DRQIDHILVDEFQDTSWLQFDLLSTLVSGW-----QPDDGRTLFVVGDPMQSIYRFREAE 460

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                L+  +               ++L  +FRS   I+  ++  F               
Sbjct: 461  VGLFLQAGQQ-----GIGPVSLQSLQLSANFRSQQGIVDAINGWF--------------- 500

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                 +      G V  +      +             + +   +       A  +   I
Sbjct: 501  PDIFPAQEDAGRGAVCYFPAQPVLNRGMGEAVSVYPDYHNNPDEE-------AAEVVELI 553

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
              +                A+ I VLVR R     I    +     + I  +  D  +LT
Sbjct: 554  KVLRDRHP-----------AESIAVLVRSRTHLKSILPHLQ----KHAIGYMAQDIDVLT 598

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR----HETETVYEY 469
                + DL AL + +L   DDLS++ +L++P    + D++      +     +  T    
Sbjct: 599  QCPVVSDLTALTKALLHGGDDLSWLTVLRAPWCGLTLDELIHFAPSKTTTVAQLATTEAV 658

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            +         +   VI  + E                      G   +  +  ++V +  
Sbjct: 659  LSALPPASQQRVAAVIAIVVEYRRRRGRVPLRQLVESCWRDLDGPCYYGGQAVHDV-EPF 717

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
               L+       +    L  +    E           +  + V++MT+H AKGLE   V 
Sbjct: 718  WALLDRL-----DYGGDLLAIEQLDESLQQLFATPVVSGESAVQVMTIHKAKGLEFDHVV 772

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L   G +     H     +    +     PI  P     + I   L +  ++    E  R
Sbjct: 773  LPSLGRKPRRSDHPLMRWLEHPTHGLLMAPITAP-GDVADPIYGLLGQLEQRKEDYEVAR 831

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV +TRA   L +   +  + + ++   +   +                       E 
Sbjct: 832  LLYVALTRARRTLHLFGQAALARDGQAQPASGSLLATLWPAIGHHFVPDDSQTLQGDSEQ 891

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
             A  +                                    +     L            
Sbjct: 892  DARRYG--------------------------------PPLLRRAEPLYAVQPKRAEADG 919

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEH----KRKNFITSYCTKNAKLWPAKE----- 820
            +    S     + G ++H   +     P+      +    ++   +  +L    E     
Sbjct: 920  VTPWRSGTIASHVGTLVHHWFERFALDPQAIENYHQVEQRSALIGRQVRLLGLAEHHIEP 979

Query: 821  -YKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPKKDIIISGRIDQISISQQN 877
                +   I  +L +      ++      +E ++SG++        ++  ID+  I +  
Sbjct: 980  MVGRINQLIDTMLSSDRGRWILAPHPQGRNEYALSGEL----DGQFVNVVIDRTFIHETE 1035

Query: 878  IFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             +I +YKT       +E         +  QL  Y ++L    P     C L +
Sbjct: 1036 RWIIDYKTSVPGRLSMEEFYQQQAEIYADQLHRYAQLLGRLDPEHRCRCALYF 1088


>gi|218130915|ref|ZP_03459719.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697]
 gi|217987259|gb|EEC53590.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697]
          Length = 760

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/620 (15%), Positives = 188/620 (30%), Gaps = 121/620 (19%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y E  ++   +DF+DL+  T  L +       +  +   +  +IL+D
Sbjct: 169 AAKMPAIRDIYRRYWERCRQADAMDFDDLLFYTFLLFRDHPD---VLARYQSQFRYILVD 225

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  L ++           R +  VGD+ QSIYSF GA+   +L   ++
Sbjct: 226 EYQDTNFAQHSIVLQLAKE----------HRHVCVVGDDAQSIYSFRGADIDNILYFTKV 275

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I++  + +    +        S            
Sbjct: 276 YP--------GTKVFKLEQNYRSTQTIVSAANSLIEKNQRQIRKEVFS------------ 315

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +   I+ +       
Sbjct: 316 ---------------EKEKGEAIGVYQAYSDVEEGDI--------VINKIAELRRQG--- 349

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       +               IKD +A
Sbjct: 350 ------NYAYSDFAILYRTNAQSRVFEEAMR----KRSMPYRIYGGLSFYQRKEIKDTIA 399

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R  ++  D+ +F  ++  P     +  + KI         +++  + +          
Sbjct: 400 YFRLTVNPNDEEAFKRIINYPARGIGDTTVSKITAAATDHNVSLWTVLCEPLTYGVNINK 459

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
             ++K Q     +   I      + ++  T I+               E     + ++E 
Sbjct: 460 GTVTKLQSFRDLMTGFIESVSEKNAYELGTEIIRQSGIIGDVCQDNSPENLSRKENIEEL 519

Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            N           E N+  +L + +SE+             +  ++ +MTVH+AKGLE  
Sbjct: 520 ANGMSDFCAQRQEEGNNNITLGDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEFR 578

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 579 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 604

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA D   +    +     K    +    + D      ++ +         
Sbjct: 605 ERRLFYVAITRAEDHCFLTYAKSRYRYGKMEFGSPSRFLKDIDVRFLKLPQDAGLGRRVD 664

Query: 707 DEWIAYEWSTHHPENTPLER 726
           +   ++   T      P   
Sbjct: 665 ESAASFRSRTRQEVIAPTVP 684


>gi|57234053|ref|YP_181909.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195]
 gi|57224501|gb|AAW39558.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195]
          Length = 738

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 183/551 (33%), Gaps = 118/551 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   YE+  K+N  LDF+DL++    L K+      +  +  +   H+++DE QD
Sbjct: 167 EVVGRVYELYEKRLKQNKALDFDDLLLKVVQLFKQHPE---VLARYQERYLHVMVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+L+Q+E+++ L+  +          + +  VGD  QSIYS+  A+ + V   +      
Sbjct: 224 TNLVQYELVKMLSAKY----------KNICVVGDPDQSIYSWRSADLRNVFNFETD---- 269

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST +IL     V +     + +S                   
Sbjct: 270 ----NPGAKVILLEQNYRSTKNILEAASCVIAPNSGRKPIS------------------- 306

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + Q  +    F+   +       A+ +   I  +           
Sbjct: 307 --LW-------TENESGQPIAVVETFNEQEE-------AQFVVSEIEKLTR--------- 341

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI +L R    +  +          Y +               +KD++A  R 
Sbjct: 342 YEKFSPGDIAILYRTNAQSRALEEAF----IRYGMPYRLVSGTRFYQRREVKDIVAYLRL 397

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480
           + + +D +S   ++  P        +  +    R +  ++YE +   ++    K      
Sbjct: 398 LQNPQDSVSLQRVINIPTRGIGAKTLSDLGQFAREQDISLYESLVNLSDENTPKPPIPSR 457

Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
                      +  L+  A+     +    +L     R+    S  G E  D + E    
Sbjct: 458 GLKPLTDFGLLLKSLVADARNLPLLNLLDRLLEGINYREFLFASEDGEERWDNILELRTV 517

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             + ++      + L   LE               + V ++T+H AKGLE PVVF+V   
Sbjct: 518 AQQYQEIVPP--EGLSVFLESVALVSDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGME 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H                                         +  +E  RL YVG
Sbjct: 576 EGVLPHSRSFDDP----------------------------------AQMQEERRLCYVG 601

Query: 655 MTRASDQLIIC 665
           +TRA  +L + 
Sbjct: 602 VTRARKRLYLV 612


>gi|150006034|ref|YP_001300778.1| putative helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934458|gb|ABR41156.1| putative helicase [Bacteroides vulgatus ATCC 8482]
          Length = 796

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 109/799 (13%), Positives = 232/799 (29%), Gaps = 138/799 (17%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFL 74
           + +   P     ++  NK      E     +  +A+ L   +              +   
Sbjct: 45  LERGYTPWSILALTFTNKAAREMKERIARQVGDQARYLWMGTFHSIFSRILRCEAQAVGF 104

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKK------SQDEFIKIRDRFNTYKMFKSTLASLT 128
           T  FT   +  ++ + K      +   K       Q      ++       + S      
Sbjct: 105 TSNFTIYDSSDSKSLIKSIVKEMQLDDKTYKPGVIQARISNAKNHLVFPDAYVSNAELYQ 164

Query: 129 --------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                     + +   Y E  +++  +DF+DL++ T  L +       I  K  ++  ++
Sbjct: 165 YDLNAKVPATRDIYRRYWERCRQSDAMDFDDLLVYTYMLFRDHPE---ICRKYAEQFRYV 221

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA    +L+ 
Sbjct: 222 LVDEYQDTNFAQHSIVLQLTQE----------HQRVCVVGDDAQSIYSFRGANIDNILKF 271

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            ++         +   + +L  ++RST  I+   + +             S         
Sbjct: 272 TQLY--------KGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIRKEVFS--------- 314

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                               +   +     + +  + +          +A  I  +   +
Sbjct: 315 -------------------EKAKGEPIGVFNAYSDVEEG-------EIVANQIVKLRSRE 348

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                         D  +L R    + +     R       +               IKD
Sbjct: 349 H---------YSYNDFAILYRTNAQSRIFEEALR----KRALPYKIYGGLSFYQRKEIKD 395

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQK 472
           +++  R  ++  D+ +F  +L  P     +  + K I        +++        Y   
Sbjct: 396 VISYFRLAVNPNDEEAFKRVLNYPARGIGDTTLNKVIDAAAQHHVSLWMVLEEPLAYGLN 455

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
                 +K Q   + +   I      + ++   +I+       +       E     + +
Sbjct: 456 INKGMHTKLQGFRELVESFIVEVPKKNAYELGAMIVRQSGIMNEIYQSNDPENLSRQENI 515

Query: 530 DEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           +E +N           E N    L + +SE+             +  ++ +MT+H+AKGL
Sbjct: 516 EELINGMHDFCATREEEGNENILLTDFLSEVSLLTDQD-NEKEGDAEKITLMTIHSAKGL 574

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   VF+V     +F        +                                    
Sbjct: 575 EFKNVFVVGMEENLFPSALSLNSY----------------------------------KE 600

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            EE  RL YV +TRA +   +    +     K    +    + D   +  ++ + +    
Sbjct: 601 LEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRFLKDIDVHFLKLPQEEQMAR 660

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPST 761
              +    +    +      L  E   +                      P +  + PS 
Sbjct: 661 RIDERASRFCREQNERAARSLFDEPASQSSYGRSSSNISGGQKTFLVGERPKVEIIRPSI 720

Query: 762 IDTKGKTNLESLLSDNQTF 780
                K   E++   +   
Sbjct: 721 PRNLTKVGPETVSKPSAAR 739


>gi|328471315|gb|EGF42214.1| DNA-dependent helicase II [Vibrio parahaemolyticus 10329]
          Length = 723

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 102/549 (18%), Positives = 181/549 (32%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+      ++R        HIL+DE QDT+ I
Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +  R         
Sbjct: 229 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTREFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 273 --SVTTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I                  
Sbjct: 310 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R + ++
Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALAYMRLMANR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T++E           A          
Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRRAARDRGCTMWEASVAMLDEQVLAGRAAGALGRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ I  L         H+    ++        +    G +    I+ L+E +  T + E+
Sbjct: 462 IELITALEDDTLEMPLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 522 PEEAEEMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 608 QKLYITYAE 616


>gi|313898067|ref|ZP_07831606.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2]
 gi|312957095|gb|EFR38724.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2]
          Length = 763

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/630 (16%), Positives = 200/630 (31%), Gaps = 121/630 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   YE+  K+   LDF+DL+I  + +LK ++    +R K  +   ++ +DE QD
Sbjct: 167 QIKADVYEFYEKRLKEMYALDFDDLLIFAHRILKSKEE---VRAKWQRRFTYLHVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
              +Q+ +I+ L ++             L  VGD  Q+IY++ GA+   ++  +R     
Sbjct: 224 VDNLQYAIIKLLVKE----------GSYLCVVGDPDQTIYTWRGAQVDIIMNFERDFP-- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RST  IL   + +     N                        
Sbjct: 272 ------DSHTVVLNENYRSTQQILNGANALIKNNRNRIDKDLF----------------- 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                        +   +   +++  D+             +A  I  +           
Sbjct: 309 ----------TRVESEDKIIHFSAMDDANEPV--------WVASKIMTLH---------- 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  +DI +L R    +  +  +      D+ I           D   IKD ++  R 
Sbjct: 341 HDHVDYRDIAILYRSNFLSRGLEKVL----LDFHIPYRIYGGVRFYDRAEIKDALSYLRL 396

Query: 428 ILSQED---------DLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQKFANCG 477
           +    D         +L+   ++ SP        +  I  Q +  ET +Y+ + ++    
Sbjct: 397 LA-PFDEQDPKALYKNLAVKRVINSPKRGIGAKTLETIELQANHDETNMYDVLCEYEIGK 455

Query: 478 ISK---FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                  Q  +  I E   +    S       +L               E ++ + E + 
Sbjct: 456 GKARANIQAFVAMIEECRMLVDTISIDQLLEKVLEDSGYLDMLREDKEIERLENIKELIG 515

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                 +        L   L++      +    N + V++MT+H AKGLE   VF+    
Sbjct: 516 DISDYVEAHPEG--TLNEYLQEISLYSDKEEQENGDFVQLMTIHAAKGLEFDNVFVYSLC 573

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F ++        P                                  EE  RL YV 
Sbjct: 574 EGIFPNERSVGEGGQP--------------------------------ALEEERRLAYVA 601

Query: 655 MTRASDQLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            TRA  QL +     +S   ++ K+  R   ++  D   +     +   ++ ++      
Sbjct: 602 FTRAKKQLFLSDSYGYSYVLDKIKTTSRFIKELPEDCIEDVGAKPRNTFSSDVDTFSGSD 661

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPK 741
           +             +E +      E+K+  
Sbjct: 662 FLSMHSSDMVQHRPQESSGYARQAERKLSD 691


>gi|81429165|ref|YP_396166.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610808|emb|CAI55859.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K]
          Length = 749

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/630 (15%), Positives = 192/630 (30%), Gaps = 103/630 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V                 + ++   L            
Sbjct: 30  GAGSGKTRVLTHRVAYLIEEKHVLPWRILAITFTNKAAREMRERVGNLLGEGAQDVWVST 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE----------FIKIRDRFN 115
           F  L    L  +   ++    +      P  +  L +                 I    +
Sbjct: 90  FHALCVRIL--RREIEQIGYNRAFTIADPSEQLTLMRHVCRDLNIDTKKYEPKAILGTIS 147

Query: 116 TYKMFKSTLASLT---------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             K    T A            +A      Y++   +N  LDF+DLI+ T  L ++    
Sbjct: 148 KAKNALQTPADYQGLANGPFEKMAAKCYTEYQKRLHQNQALDFDDLIMQTIRLFREN--- 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                   ++  +I +DE QDT+  Q+ ++  L E +          + L  VGD  QSI
Sbjct: 205 KETLAHYQEKFQYIHVDEYQDTNEAQYTLVNMLAEKY----------QNLCVVGDADQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   ++  +                + L  ++RST  IL   + V +     + 
Sbjct: 255 YGWRGADISNIMNFEHDYP--------DAKSVMLEQNYRSTKTILEAANGVINRNTFRKP 306

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                 +LW             Q  ++        +        
Sbjct: 307 K---------------------ELW-------TQNEEGQPITYYRGQSERDESL------ 332

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +   I   +  +           +  D  VL R    +  I            +    
Sbjct: 333 -FVITKIQEEMQKNHR---------KYGDFAVLYRTNAQSRTIEEAF----VKANMPYKM 378

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R +++  D +SF  ++ SP        + K+         +
Sbjct: 379 VGGHKFYDRKEIKDILAYLRLVVNAADSMSFERIVNSPKRGIGPGTLEKLGQFADDHQWS 438

Query: 466 VYEYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           + E  Q      I              I +L  + +F +  D    +L     ++     
Sbjct: 439 LLEAAQNAELSTIPARSRNTLIDFGNVIGDLAKMREFLNVTDLTEQLLDKTGYKKALEVE 498

Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSSLQE---LISELEQYPPTIKRAH-SANHNEVR 573
              E    ++ ++E L+ T + +++     ++    +  L +              +EV 
Sbjct: 499 NTLESQTRLENIEELLSVTKQFDEHYEPEEEDSDLFVDFLAELSLVSDLDSVEEEASEVT 558

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           +MT+H AKGLE PVVFL+     +F     
Sbjct: 559 MMTLHAAKGLEFPVVFLMGMEEGIFPLSRA 588


>gi|313618386|gb|EFR90413.1| ATP-dependent DNA helicase PcrA [Listeria innocua FSL S4-378]
          Length = 543

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/563 (17%), Positives = 185/563 (32%), Gaps = 115/563 (20%)

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F    
Sbjct: 1   DFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF---- 53

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                 + L  VGD  QSIY + GA+   ++  ++               I L  ++RST
Sbjct: 54  ------KNLCVVGDSDQSIYGWRGADISNIMSFEKDYP--------SAKTILLEENYRST 99

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             IL   ++V     N +  +                     LW        S    ++ 
Sbjct: 100 KRILEAANRVIENNGNRKPKN---------------------LW-------TSNAEGKKI 131

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
            +        +       A  +   I   +   +             D  +L R    + 
Sbjct: 132 FYHKALTEKEE-------AAYVVMKIQEEVNNSSR---------PLSDFAILYRTNAQSR 175

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           ++            ++          D   IKD++A  R I + EDD+S   ++  P   
Sbjct: 176 VMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINVPKRG 231

Query: 448 FSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPH 501
                + K+         +++E + +                    +     +  F S  
Sbjct: 232 VGPGTLEKLNNVAAAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDFLSVT 291

Query: 502 DFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISELEQY 557
           +    IL     R    +    E     + +DEFL+ T   E+ +   +L   +++L   
Sbjct: 292 ELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLLAFLTDLALV 351

Query: 558 PPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
               K    +   +  V +MT+H+AKGLE PVVFLV     +F H               
Sbjct: 352 ADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS-------------- 397

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                   ++   EE  RL YVG+TRA ++L +    +     +
Sbjct: 398 --------------------RAIYEEEEMEEERRLAYVGITRAEEELFLTSAYSRMLYGR 437

Query: 676 SNQRTWYDMVYDSFHNDERVKKI 698
            +       + +   +   +   
Sbjct: 438 PSSNQESRFIGEIPRDLLELGNE 460


>gi|153839103|ref|ZP_01991770.1| DNA helicase II [Vibrio parahaemolyticus AQ3810]
 gi|149747399|gb|EDM58363.1| DNA helicase II [Vibrio parahaemolyticus AQ3810]
          Length = 723

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 102/549 (18%), Positives = 181/549 (32%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+      ++R        HIL+DE QDT+ I
Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +  R         
Sbjct: 229 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTREFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 273 --SVTTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I                  
Sbjct: 310 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R + ++
Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALAYMRLMANR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T++E           A          
Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRRAARDRGCTMWEASVAMLDEQVLAGRAAGALGRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ I  L         H+    ++        +    G +    I+ L+E +  T + E+
Sbjct: 462 IELITALEDDTLEMPLHEQTDHVIKYSGLFTMYEQEKGEKSKARIENLEELVTATRQFEK 521

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 522 PEEAEEMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 608 QKLYITYAE 616


>gi|52425423|ref|YP_088560.1| DNA-dependent helicase II [Mannheimia succiniciproducens MBEL55E]
 gi|52307475|gb|AAU37975.1| UvrD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 727

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 191/551 (34%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF ++++   +L  K+ V   I  +  Q    IL+DE QDT+ IQ
Sbjct: 178 IYRIYQDTCDRAGLVDFAEILLRAYELFLKKPV---ILQRYRQRFQQILVDEFQDTNKIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L  +             +  VGD+ QSIY + GA+ + + R      K      
Sbjct: 235 YAWIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLDDFHK------ 278

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL   +++ S   N  G                       LW 
Sbjct: 279 --AKTIRLEQNYRSTGNILQSANQLISNNSNRLGK---------------------DLW- 314

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +     + F+ L +       A  ++  I                  +
Sbjct: 315 ------TEGDKGEPVGIYAAFNELDE-------ALFVSSQIKIWWEDGG----------E 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 LNDCAVLYRSNSQSRVIEEAL----IRAQIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 407

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++  Q      K A    +      
Sbjct: 408 DDAAFERVINTPTRGIGDRTLDVLRNLTREREITLWQATQLAIGENKLAGRSATALLRFC 467

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L    +          ++      + +    G +    I+ L+E ++ T    + 
Sbjct: 468 ELINSLAQETEEMPLFAQTDFVIKHSGLYEMYKQEKGEKGEVRIENLEELVSATREFIKP 527

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    + +L + L           ++ H + V++MT+H+AKGLE P VF+V     +F  
Sbjct: 528 DDAEDMSDLSAFLTHASLEAGEEQASPHQSCVQMMTLHSAKGLEFPRVFMVGVEEGLFPS 587

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              +   +    EE  RL YVG+TRA  
Sbjct: 588 ----------------------------------FMSLEEPGRLEEERRLAYVGITRAKQ 613

Query: 661 QLIICKHSNTS 671
           +L IC   +  
Sbjct: 614 KLTICYAESRR 624


>gi|282855099|ref|ZP_06264431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139]
 gi|282581687|gb|EFB87072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139]
          Length = 810

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 99/633 (15%), Positives = 194/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A Y+   +    LDF+DLI+ T  +L++      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYAEYQRRLRAANALDFDDLIMYTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  + + I + +      +  + IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDDHIAMVEQGKRADEIASSILKESGYITELENSKDPQDETRLENLIELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLESSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +      
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPERLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|238018401|ref|ZP_04598827.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748]
 gi|237864872|gb|EEP66162.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748]
          Length = 1266

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 120/774 (15%), Positives = 242/774 (31%), Gaps = 72/774 (9%)

Query: 1   LKNRFG-------LSLNESY--ELIYKDLWPLPYFQVSDINKYVSLSMET-GNPTILKKA 50
           L+           ++ +++   + ++     +       + +   + ++  G        
Sbjct: 201 LRKALAPYKEAMEINPSDTLWGQYMWDQHIAVIDRIRERLERMEQILLDPVGPHKWQNIY 260

Query: 51  QTLQQASQTQCIEERFSLLSSF------FLTQK---FTPQKNIITQEINKKSPDL----K 97
                A       + +  +         F+  +    + +       +  +   L    K
Sbjct: 261 DNQLAALGMLSNAQTWDDMGEACKHIDTFIKDQFRMGSKEAQSYDPILVAEFKSLGAQNK 320

Query: 98  EKLKKSQDEFIKIRDRFNTYK---MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           + LK  Q     + +     +    +      + L    +  Y + K++  ++DF DL  
Sbjct: 321 DDLKAMQASVFTVPEATLQEQFKAQYPIIEGLVELTIAFHQAYRDMKQEQGIMDFSDLEH 380

Query: 155 NTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
               LL     +     + +  ++      I++DE QDT+ +Q  +I  +          
Sbjct: 381 LCLALLVEPGTEDDPQPSDVAKELQDTFKEIMVDEYQDTNGVQETIINLI---------- 430

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
            S     F VGD KQ+IYSF  A+    + +                 I+L  +FRS  +
Sbjct: 431 -SRVDNRFYVGDVKQAIYSFRMADSSLFMEKYNTYG----GNDAVERRIDLAKNFRSHEN 485

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR-------IGQVGTVQLWEQVVSQHDSQC 322
           IL   + +F      +    + T        R           G V+L    VS+     
Sbjct: 486 ILAATNFLFYQIMTEEAAELNYTEAESLIPGRIVENAPEDWVGGDVELQLLDVSKDTLGA 545

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--SNGKKRVIQAKDILVLV 380
           +   E      D      +       I   I  +          +G  R I+ +D  +L 
Sbjct: 546 SESDE------DEGDDPENNERELDFIIQKIKEIHAAKKQVQNPDGTFRQIEWRDFAILR 599

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R              +     I  V N+R    +   I+ L+AL   I + E DL    +
Sbjct: 600 RSLAGWGTRAV---EVMRQAGIPAVVNERDGYFEAQEIQLLLALLSIIDNPEQDLPMAAV 656

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           L S L     +++  +     E                 +    I ++     +++    
Sbjct: 657 LHSGLVGLDANELGALRLS-GEGSLWSLMPAYAEEAQDERLLSFIGHMERWRTLSRRHGV 715

Query: 501 HDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
            D    I  ++           G      +    +     E + +  L   +  +E    
Sbjct: 716 TDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYDRAKGYEASGFRGLFRFLRFVESLRD 775

Query: 560 TIKRAH-----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           + +        S   N VR+MT+H +KGLE PVVFL     +        ++ I  +   
Sbjct: 776 SNQDMPLANVVSEADNVVRVMTIHKSKGLEFPVVFLSGMQKKFNMMDLRSELLIDKNAGL 835

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                    +          +    + + + E  R+LYV +TRA D+L +          
Sbjct: 836 GLKGYFTDIRVSFPTMPWFYVKDVKEAALKAEEQRILYVALTRARDKLFMTGFVKGFKNS 895

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD-EWIAYEWSTHHPENTPLERE 727
           K    T  +++ ++   + +     +    N   +W+   ++ H     PL   
Sbjct: 896 KGGLSTLGELIKNAASVEGQQLPTDIITQANTYLDWLIMGFARHLDGGNPLRVA 949



 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 52/171 (30%), Gaps = 13/171 (7%)

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                L+S          G ++H+ +Q +      +               +  +E   L 
Sbjct: 1088 KPQALQSEEDVLTGAQWGTLMHEAMQWLPLAEYTQDSLTKELDALVTKGTFTEEERNLLS 1147

Query: 826  L-SITRLLENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQ 875
              S+ +   + +    + +     E+  S               +++ + G ID      
Sbjct: 1148 DTSLYKFFNSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGIIDTAFEED 1207

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                + +YKT        E +   +  Q+ +Y++ L+       +    IY
Sbjct: 1208 GEWVLVDYKTDRVKSG--EDLIKRYKIQMDLYKEALQRL-TGMPVKACYIY 1255


>gi|312898542|ref|ZP_07757932.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359]
 gi|310620461|gb|EFQ04031.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359]
          Length = 738

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 102/668 (15%), Positives = 189/668 (28%), Gaps = 119/668 (17%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           ++ K    +  L         +       K                  YE+  K N  +D
Sbjct: 136 LDDKQFPPRTVLGTVSSAKNALLRADEFAKSADDFYTLK--VSEAYTLYEKKLKDNNAVD 193

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F+DL++              IR K  +   +IL+DE QDT+  Q+ + + L   +     
Sbjct: 194 FDDLLLLAVK---LLQERQDIREKYQERFRYILVDEYQDTNKAQYLLTQILAAKW----- 245

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                R +  VGD  QSIY++ GA+ + ++   R             + ++L  ++RST 
Sbjct: 246 -----RNICVVGDADQSIYAWRGADIQNIMDFMRDYP--------DGTNVKLEQNYRSTK 292

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            +L   + V    E     +  +     H+                              
Sbjct: 293 TVLQAANAVIDNNEARLKKALWTENPQGHKIVHYHA------------------------ 328

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                       +    A  IA           I++           + +L R    + +
Sbjct: 329 -----------QTEHDEADYIA---------GVIYNRHSIENEPYGHMAILFRTNSQSRV 368

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
           +          Y I           D   IKD++A  R + + ED LS V +L  P  + 
Sbjct: 369 LEEKL----MRYGIPYTMVGGTKFYDRKEIKDVIAYLRVLYNPEDSLSLVRILNVPKRSI 424

Query: 449 SEDDIFKI-CTQRHETETVYEY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
               I  +         ++++               +  +     I  L+          
Sbjct: 425 GATSIEHLTDYAEENGISLFDALSTTEDLPVTKRVKTALEDFAALIFSLLGEVSKTDVPT 484

Query: 503 FFTLILGAKKGRQQF-----ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
               ++                  G    + + + +N      +++      L   LE  
Sbjct: 485 LIERVVKETGYGDMLDKEAAQDPQGESRKENVGQLINAAQEYMRDNPDG--NLQDFLENV 542

Query: 558 PPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                       +  V +MT+H AKGLE PVVFL      +F H                
Sbjct: 543 ALVSDVDEFEGSDSKVTLMTLHAAKGLEFPVVFLAGLDEGLFPHSRTL------------ 590

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                 +  +  EE  RL YVG+TRA   L +   S  +   + 
Sbjct: 591 ----------------------MDSAQIEEERRLAYVGITRAEQYLYVTNASTRTMYGRV 628

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
           +       + +         + +      + +    +  +   +    +  +      D 
Sbjct: 629 SAYLPSRFLNEIPEELMEEYRRRAEMPRGERQVPGEQRVSILTKAVTSQLPKAHHVDGDW 688

Query: 737 QKIPKKLF 744
           Q   K   
Sbjct: 689 QAGDKVRH 696


>gi|254881794|ref|ZP_05254504.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641188|ref|ZP_07995889.1| helicase [Bacteroides sp. 3_1_40A]
 gi|254834587|gb|EET14896.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387162|gb|EFV68040.1| helicase [Bacteroides sp. 3_1_40A]
          Length = 796

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 109/799 (13%), Positives = 232/799 (29%), Gaps = 138/799 (17%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFL 74
           + +   P     ++  NK      E     +  +A+ L   +              +   
Sbjct: 45  LERGYTPWSILALTFTNKAAREMKERIARQVGDQARYLWMGTFHSIFSRILRCEAQAVGF 104

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKK------SQDEFIKIRDRFNTYKMFKSTLASLT 128
           T  FT   +  ++ + K      +   K       Q      ++       + S      
Sbjct: 105 TSNFTIYDSSDSKSLIKSIVKEMQLDDKTYKPGVIQARISNAKNHLVFPDAYVSNAELYQ 164

Query: 129 --------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                     + +   Y E  +++  +DF+DL++ T  L +       I  K  ++  ++
Sbjct: 165 YDLNAKVPATRDIYRRYWERCRQSDAMDFDDLLVYTYMLFRDHPE---ICRKYAEQFRYV 221

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA    +L+ 
Sbjct: 222 LVDEYQDTNFAQHSIVLQLTQE----------HQRVCVVGDDAQSIYSFRGANIDNILKF 271

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            ++         +   + +L  ++RST  I+   + +             S         
Sbjct: 272 TQLY--------KGAKLFKLEQNYRSTQTIVCAANSLIEKNSEQIRKEVFS--------- 314

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                               +   +     + +  + +          +A  I  +   +
Sbjct: 315 -------------------EKAKGEPIGVFNAYSDVEEG-------EIVANQIVKLRSRE 348

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                         D  +L R    + +     R       +               IKD
Sbjct: 349 H---------YSYNDFAILYRTNAQSRIFEEALR----KRALPYKIYGGLSFYQRKEIKD 395

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQK 472
           +++  R  ++  D+ +F  +L  P     +  + K I        +++        Y   
Sbjct: 396 VISYFRLAVNPNDEEAFKRVLNYPARGIGDTTLNKVIDAAAQHHVSLWMVLEEPLAYGLN 455

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
                 +K Q   + +   I      + ++   +I+       +       E     + +
Sbjct: 456 INKGMHTKLQGFRELVESFIVEVPKKNAYELGAMIVRQSGIMNEIYQSNDPENLSRQENI 515

Query: 530 DEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           +E +N           E N    L + +SE+             +  ++ +MT+H+AKGL
Sbjct: 516 EELINGMHDFCATREEEGNENILLTDFLSEVSLLTDQD-NEKEGDAEKITLMTIHSAKGL 574

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   VF+V     +F        +                                    
Sbjct: 575 EFKNVFVVGMEENLFPSALSLNSY----------------------------------KE 600

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            EE  RL YV +TRA +   +    +     K    +    + D   +  ++ + +    
Sbjct: 601 LEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEFSSPSRFLKDIDVHFLKLPQEEQMAR 660

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPST 761
              +    +    +      L  E   +                      P +  + PS 
Sbjct: 661 RIDERASRFCREQNERAARSLFDEPASQSSYGRSSSNISGGQKTFLVGERPKVEIIRPSI 720

Query: 762 IDTKGKTNLESLLSDNQTF 780
                K   E++   +   
Sbjct: 721 PRNLTKVGPETVSKPSAAR 739


>gi|152964726|ref|YP_001360510.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans
           SRS30216]
 gi|151359243|gb|ABS02246.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans
           SRS30216]
          Length = 773

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 104/703 (14%), Positives = 222/703 (31%), Gaps = 119/703 (16%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           ++ +       +   L++         P+K+   + +     +LK +L           +
Sbjct: 138 MRTSFSIYDSADSQRLMAMVGRELDLDPKKH-APRAMAAMVSNLKNELVDE--------E 188

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
            F      +    +  +   +   Y++  ++   +DF+DLI++T  LL+       +   
Sbjct: 189 TFFDRANSEGGTETERVLARVYRTYQQRLRQANAMDFDDLIMSTVHLLQ---AFPDVAEH 245

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   H+L+DE QDT+  Q+ +++ L                L  VGD  QSIY+F GA
Sbjct: 246 YRRRFRHVLVDEYQDTNHAQYVLVKELVG----TGEGPVPRGELTVVGDADQSIYAFRGA 301

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             + ++  ++             + + L  ++RST +ILT  ++V  + ++ +  +    
Sbjct: 302 TIRNIVEFEQDYP--------DATTVLLEQNYRSTQNILTAANEVIKLNDDRRPKN---- 349

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW        +    +Q       D   +       A  +A  
Sbjct: 350 -----------------LW-------TAAGAGEQIVGYVADDEHDE-------AAFVAEE 378

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +  +              ++ KD+ V  R    +  +  +         +          
Sbjct: 379 VDRLHDAG---------ALKYKDVAVFYRTNAQSRSLEEVF----IRTGLPYKVVGGTRF 425

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            +   +KD +A  R + + +D ++   ++  P     E     +          +    +
Sbjct: 426 YERREVKDAVAYLRVLDNPDDTVNLRRVINVPKRGIGERAEAALVVLADRERIGFNAALE 485

Query: 473 FANC-------GISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE 524
            A+         ++  +   + I +L  +A+   +P      +L       +  +    +
Sbjct: 486 RADEAIGLVSRSLNAIKGFAQLIADLRTLAESGAAPSVVLEAVLEQTGYLAELRASADPQ 545

Query: 525 ---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHT 579
               ++ L E +       E+N   +L + +  +       +    + +   V +MT+HT
Sbjct: 546 DESRVENLSELVAVAEEFSEENPEGTLSDFLERVSLVADADQIPVGAEDDGVVTLMTLHT 605

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFL       F H                                       
Sbjct: 606 AKGLEFPVVFLTGMEDGTFPHTRSLGDP-------------------------------- 633

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                 E  RL YVG+TRA ++L + + +  S      Q      + +        K+ +
Sbjct: 634 --DQLAEERRLAYVGLTRARERLYLSRSAVRSAWGAPQQYPPSRFLDEVPATLVDWKRGE 691

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                      +   +      +   R        D       
Sbjct: 692 SAFQDVTSTSASTRVAQRPGVRSAGSRPVIALNPGDRVTHDSF 734


>gi|296268638|ref|YP_003651270.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833]
 gi|296091425|gb|ADG87377.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833]
          Length = 786

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 110/666 (16%), Positives = 206/666 (30%), Gaps = 121/666 (18%)

Query: 101 KKSQDEFIKIRDRF--NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +    +    ++    +     ++              Y+    +   +DF+DLI+ T  
Sbjct: 179 RSFAAQVSAFKNELIDHETAASRAQTHLERTLAEAYRIYQTRLTEAGAMDFDDLIMQTVA 238

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE-------DFFVGKNTHS 211
           L +   +   +     +   H+++DE QDT+  Q+ ++R L         D  V +   +
Sbjct: 239 LFQ---LFPEVAEHWRRRFRHVMVDEYQDTNHAQYVLVRELVGRPEVRTVDGDVVREGVA 295

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
            P  L  VGD  QSIY+F GA  + +L  +R               I L  ++RST  IL
Sbjct: 296 DPAELVVVGDADQSIYAFRGATIRNILEFERDFP--------DARTILLEQNYRSTQTIL 347

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              + V S  +  +  +  S                           D    P+   + +
Sbjct: 348 DAANAVISRNQGRKPKNLWS---------------------------DQGPGPKIVGYVA 380

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
             +           A  +A  +  +   +          I+  D+ V  R    + +   
Sbjct: 381 DNEHDE--------ALFVAQEVDRLADEE---------GIKPGDVAVFYRTNAASRVFEE 423

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
           +     +   +           D   +KDL+A  R +++  D +S   +L  P     E 
Sbjct: 424 VF----SRTGLPYRIVGGVRFFDRKEVKDLLAYLRILVNPNDTVSLRRILNVPKRGIGER 479

Query: 452 DIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
               I      E    +E +++       A   ++  +  +  I +L   A+     D  
Sbjct: 480 AEAMIEAFAARERIPFWEGLKRAQEAPGLATRSLNAIRDFVALIEDLR--ARELPLRDLV 537

Query: 505 TLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQ-YPP 559
             +  A   R +       +    +D + E ++     E  +    L   + ++      
Sbjct: 538 EEVANATGYRVELEESDDPQDANRLDNIKELVSMAAEYEAANPDGGLVGFLEQVSLVSDA 597

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                   +   V +MT+HTAKGLE PVVFL      VF H+                  
Sbjct: 598 DEIPDGEDHGGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPHQRSMTDP------------ 645

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                                    EE  RL YVG+TRA  +L   +    S     +  
Sbjct: 646 ----------------------KELEEERRLAYVGITRAKQRLYFSRAVVRSAWGAPSFN 683

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                +     ++   + I+      K  W A         +          + +     
Sbjct: 684 PASRFL-----DEVPAELIEWRTDPGKTPWTAATERREPGRSRTAGPARPGARPIPALAP 738

Query: 740 PKKLFS 745
             ++  
Sbjct: 739 GDRVAH 744


>gi|284047984|ref|YP_003398323.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM
           20731]
 gi|283952205|gb|ADB47008.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM
           20731]
          Length = 750

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 101/602 (16%), Positives = 195/602 (32%), Gaps = 121/602 (20%)

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
           K   ++ +    +++K   L   L    +      D     +  +   A       + A 
Sbjct: 118 KNVLKEALKKLNLDEKFYPLPGLLATISNAKNAQVDAAAFARQAEDYHAKK--VAEIYAE 175

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   ++  +DF+DL++ T            +R K   + +++LIDE QDT+ +Q+ + 
Sbjct: 176 YQKHLVQSNAVDFDDLLLLTVK---LLQTVPEVREKYQNKFHYVLIDEYQDTNHVQYLLA 232

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L+               L AVGD  QSIY + GA+   +L  ++   +          
Sbjct: 233 KLLSA----------PENNLCAVGDIDQSIYGWRGADISNILDFEKDYPQ--------AR 274

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           I +L  ++RST  IL   ++V       +  +                     LW     
Sbjct: 275 IFKLEQNYRSTQVILDAANEVIKHNAARRPKN---------------------LW----- 308

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                 N Q  ++    D   +       A  +   I  +    T          +  D+
Sbjct: 309 --TENGNGQPIAYYQARDDREE-------AEFVVGQIRKLQREGT----------KLGDM 349

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R    + +          +  +  V        D   +KD ++  RF+ ++ D   
Sbjct: 350 AILYRTNAQSRMFEENL----INNGVPYVMVGSLKFYDRKEVKDTLSYLRFLSNERDIQG 405

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYE------YIQKFANCGISKFQHVIKYIHE 490
              ++  P        + K+ T   ++             ++       K Q     I E
Sbjct: 406 LERIINEPKRGIGAATVAKVRTLLEDSGMTLPEVLQTVQARELLGRAFPKIQAFSDMIQE 465

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE----QNS 543
           L  +       D    +L      +       ++    +D L+EFL           + +
Sbjct: 466 LARVKDTLPVKDLMEQVLEKSGYLEALRLEGSDQSKSRLDNLNEFLRIADEFAKDPGEEN 525

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +L++ ++ +               + V +MT+H+AKGLE PVVF+      +F  +  
Sbjct: 526 NKTLEDFLNHVALVADID--DAKLTQDSVTLMTLHSAKGLEFPVVFIGGMEDGLFPSQRS 583

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            +                                           RL YVG+TRA  +L 
Sbjct: 584 LEDEDKLEEE----------------------------------RRLCYVGITRAKKRLY 609

Query: 664 IC 665
           + 
Sbjct: 610 LT 611


>gi|149191373|ref|ZP_01869625.1| DNA-dependent helicase II [Vibrio shilonii AK1]
 gi|148834790|gb|EDL51775.1| DNA-dependent helicase II [Vibrio shilonii AK1]
          Length = 723

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 116/691 (16%), Positives = 225/691 (32%), Gaps = 132/691 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +     S  +             +  + + L   S +      
Sbjct: 30  GAGSGKTRVLVHRIAWLMSVENASPFSIMSVTFTNKAAAEMRGRIEELMMGSSSGMWNGT 89

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
           F              + L   F       Q+ ++ + I  ++ D K+   +    +I  +
Sbjct: 90  FHGICHRILRAHYLDAKLPEDFQILDSDDQQRLLKRLIKAQNLDEKQWPARQAAWWINGK 149

Query: 112 --DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +      +             +   Y+EA  +  ++DF ++++  ++LL+      ++
Sbjct: 150 KDEGLRPQHIDSYQDPVTKTYLQIYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFV 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R        HIL+DE QDT+ IQ+  +R +T               +  VGD+ QSIY +
Sbjct: 207 REHYQARFKHILVDEFQDTNNIQYAWLRMMTG----------PDCKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                + I L  ++RST  IL   +++ +      G   
Sbjct: 257 RGAKVENIQKFLDEY--------LGATTIRLEQNYRSTKTILEAANELIANNTERMGK-- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW             ++ S  S ++ L +       AR  
Sbjct: 307 -------------------ELW-------TDGNEGEKISVYSAYNELDE-------ARFA 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I     T               D  +L R    + ++           ++       
Sbjct: 334 VNKIKEWQETGGSL----------TDCAMLYRNNAQSRVLEEAL----IQAQLPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
               +   IKD +   R I ++ DD +F  ++ +P     +  +  I    R    T++E
Sbjct: 380 MRFFERQEIKDALGYLRLIANRNDDAAFERIVNTPTRGLGDKTLDTIRFAARDRGATLWE 439

Query: 469 YIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                      A          I+ I+ L       + H+    ++        +    G
Sbjct: 440 ASNALLEEKVFAGRAAGALSRFIELINALEDDTFESALHEQTDHVIKTSGLFLMYEQEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    I+ L+E +  T + E+      +  L + L        +       + V++MT+
Sbjct: 500 EKSKARIENLEELVTATRQFEKPEEAEDMTLLTAFLTHAALEAGEGQADEFDDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPMVFMVGVEEGMFPSQMS---------------------------------- 585

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             +    EE  RL YVGMTRA ++L I    
Sbjct: 586 AEEAGRLEEERRLCYVGMTRAMEKLFITYAE 616


>gi|325578673|ref|ZP_08148749.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392]
 gi|325159712|gb|EGC71843.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392]
          Length = 725

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 111/602 (18%), Positives = 205/602 (34%), Gaps = 117/602 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L  K+ V   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRAYELFAKKPV---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  I+ L  +             +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 234 YAWIKILAGN----------TGKVMIVGDDDQSIYGWRGAQVENIQKFLKDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL   +++ S   +  G +                     LW 
Sbjct: 276 -NAETIRLEQNYRSTGNILKSANQLISNNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +     + F+ L +       A+ +A  I N +               
Sbjct: 313 ------TDGEMGEPVGIYAAFNELDE-------AKFVASQIQNWVDDGGKLD-------- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q             +      
Sbjct: 406 DDAAFERVINTPTRGIGDRTLDVLRNLTRERQITLWQAVQVATQENMLTGRASTALLRFQ 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++        +    G +    I+ L+E +  T    + 
Sbjct: 466 ELINSLQVDTAEMPLFAQTDFVIKHSGLYDMYKQEKGEKGEVRIENLEELVTATREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    + +L + L           ++ H + V +MT+H+AKGLE P VF+V     VF  
Sbjct: 526 DEAEDMTDLTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGVFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKQ 611

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L IC   +     K  +      + +      +  +++ T +   ++      S   PE
Sbjct: 612 KLTICYAESRRVYTKEERHLPSRFITELPSECIQEIRLRGTVTRALNQAKVGSLSASLPE 671

Query: 721 NT 722
           N 
Sbjct: 672 NE 673


>gi|270294147|ref|ZP_06200349.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275614|gb|EFA21474.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 784

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 100/664 (15%), Positives = 200/664 (30%), Gaps = 123/664 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y E  ++   +DF+DL+  T  L +       +  +  ++  +IL+D
Sbjct: 169 AAKVPALRDIYQRYWERCRRADAMDFDDLLFYTFLLFRDHPE---VLARYQEQFRYILVD 225

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  L ++           + +  VGD+ QSIYSF GA+   +L   ++
Sbjct: 226 EYQDTNFAQHSIVLQLAKN----------HQHVCVVGDDAQSIYSFRGADIDNILYFTKV 275

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    +                     
Sbjct: 276 YP--------DTKVFKLEQNYRSTQTIVRAANSLIEKNQ--------------------- 306

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                  W+        +   +       +  + +          +   I+ +       
Sbjct: 307 -------WQIRKEVFSEKEKGEAIGVYQAYSDVEEGDI-------VVNKIAELRRE---- 348

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                +     D  +L R    + +     R       +               IKD++A
Sbjct: 349 -----KRYAYSDFAILYRTNAQSRIFEEAMR----KRSMPYRIYGGLSFYQRKEIKDVIA 399

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVY-------EYIQKFAN 475
             R I++  D+ +F  ++  P     +  + KI         +++        Y   F  
Sbjct: 400 YFRLIVNPNDEEAFKRIINYPARGIGDTTVGKIIAAATGHNVSLWTVLCEPLAYGLNFNK 459

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
             + K Q   + I   I  A   + ++    I+               E     + ++E 
Sbjct: 460 GTVGKLQVFRELISAFITDAAEKNAYEIGADIIRQSGIINDVCQDNSPENLSRKENIEEL 519

Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N           E N    L + +SE+             +  ++ +MTVH+AKGLE  
Sbjct: 520 VNGMSDFCAQRQEEGNPNVLLGDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEFK 578

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 579 NVFVVGMEENLFPSGMVGDSP----------------------------------RALEE 604

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   +          K    +    + D      R+ +        +
Sbjct: 605 ERRLFYVAITRAEEHCFLSYAKTRFRYGKMEFGSPSRFLKDIDIRFLRLPQDAGMFRRVE 664

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           +E  A+     +      +RE+      +   +  K              + PS      
Sbjct: 665 EEAAAFRR--ENARGFAPDREDAPYGGKERVSVRPKQQIIAPTVPRNLKRVAPSANTAST 722

Query: 767 KTNL 770
             + 
Sbjct: 723 SPSA 726


>gi|118475254|ref|YP_891891.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414480|gb|ABK82900.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus
           82-40]
          Length = 685

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 110/544 (20%), Positives = 191/544 (35%), Gaps = 125/544 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE    N ++DF+DL+  T  +L   +    +  +I     +I++DE QDT+ 
Sbjct: 172 AKAYKLYEEYLAANNLVDFDDLLALTYKILLNNND---LANEISNRYKYIMVDEYQDTND 228

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++R L E              L  VGD+ QSIY + GA+ + +L  K         
Sbjct: 229 LQYKLLRKLCEC----------HENLVVVGDDDQSIYGWRGAKIENILNFKDQFNN---- 274

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL   +++     +  G    ST                  
Sbjct: 275 ----VKLIKLEENYRSTPSILKAANELIDHNRSRLGKQLFSTKK---------------- 314

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                Y   + +    +I AR IA  I  ++G+           
Sbjct: 315 -------------------DEYPIQIIENGDENIEARVIAGQIQKLLGSG---------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++A +I +L R    +  +        N  +I           + + IKD+++  R IL+
Sbjct: 346 VKADEIAILYRVNALSRSLEDGL----NKARIPYKMVGGVKFYERMEIKDIISYLRLILN 401

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK-----FQHV 484
             DD S   ++  P     +  + K+         ++Y  I    +  I K         
Sbjct: 402 PNDDFSLNRIINRPKRGLGKVSLAKLEKFAYENKTSIYNAIYMIDDDTIGKKLRVVLLDF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQN 542
              + EL  +A      +     L    G +++      G + +  +DEF        QN
Sbjct: 462 ANELKELSSLAPNNLLAN-----LEKSFGIKEYYKNLPDGVDRVANIDEFYALIKDQIQN 516

Query: 543 SYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
             S +L+E ++EL       +     + + + IM+VH +KGLE   +F++      F   
Sbjct: 517 DESFALEEFLNELALESEQDRI----SDDAISIMSVHASKGLEFEHLFVIGLEEGFFP-- 570

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                          G                        S  EE  RL YV +TRA   
Sbjct: 571 -----------LIGDG------------------------SDIEEERRLAYVAITRAKSG 595

Query: 662 LIIC 665
           L + 
Sbjct: 596 LNLS 599


>gi|257865963|ref|ZP_05645616.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30]
 gi|257872296|ref|ZP_05651949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10]
 gi|257875590|ref|ZP_05655243.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20]
 gi|257799897|gb|EEV28949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30]
 gi|257806460|gb|EEV35282.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10]
 gi|257809756|gb|EEV38576.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20]
          Length = 747

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 115/803 (14%), Positives = 239/803 (29%), Gaps = 142/803 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L  +         
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVSQLLGSGGEDVWVST 90

Query: 66  FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +        KN    + ++++  +K  LK+                    
Sbjct: 91  FHSMCVRILRRDVDRIGYSKNFTIIDSSEQNTLMKRVLKELNIDPKKYDPRSILGTISHA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + +++   SL   +       Y++  + N  +DF+DLI+NT  L +  + +  
Sbjct: 151 KNELLTPEAYQAMEGSLFEQIVGRCYEKYQKELRNNQCMDFDDLIMNTIRLFQDNEDA-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 ++ ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 209 -LQFYQRKFHYIHVDEYQDTNHAQYTLVNLLAARF----------RNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++             + I L  ++RST  IL   ++V     N    +
Sbjct: 258 WRGANMQNILDFEKDYP--------DAATILLEQNYRSTQTILNAANQVIKNNRNRPDKN 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW           + ++ ++        +  S    AR 
Sbjct: 310 ---------------------LW-------TENHDGEKITYY-------RGDSERDEARF 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I           +  +  D  +L R    + +I  +         +      
Sbjct: 335 IVSEMQKQIAE---------KNRKFGDFAILYRTNAQSRIIEEML----LKANVPYTMVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   I+D++A    I +  D +S   ++  P        + K+         ++ 
Sbjct: 382 GRKFYDRKEIRDILAYLSAIANPRDSISLERIINVPKRGIGATSVEKLRAFANLHEWSLL 441

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E          +     +       +     +  + S  +    IL     RQ+ +++  
Sbjct: 442 EAAMNVELANISGKAGKELGSFGMMMDGFAQMVPYLSVTELTKEILEKTGYRQELVNQNN 501

Query: 523 NEVI---DVLDEFLNFTLRNEQNSYSS-----------LQELISELEQYPPTIKRAHSAN 568
            E     + L+EFL+ T   ++   +            L   +++L            ++
Sbjct: 502 LEAQARLENLEEFLSVTQEFDKRFEAQNEDDADAPDEKLSVFLNDLALLSDVDSYEEESS 561

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V +MT+H AKGLE PVVFL+     +F                              
Sbjct: 562 Q--VTLMTLHAAKGLEFPVVFLIGLEENIFPLSRALMEESELEEERRL------------ 607

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                                  YVG+TRA ++L +    + +   ++        + + 
Sbjct: 608 ----------------------AYVGITRAEEELFMTNAFSRTLYGRTQYNRPSRFIEEI 645

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
             +  +    +                ++          +             +     K
Sbjct: 646 EQDLLQSLGERSQPKAAAPFQPKVFKPSYTQPRQTTVASKQQTSAAGNTWQVGEKVQHKK 705

Query: 749 NDINEPYILNPSTIDTKGKTNLE 771
             I        S  D +      
Sbjct: 706 WGIGTVVRTTGSAQDVELDVAFP 728


>gi|28899787|ref|NP_799392.1| DNA-dependent helicase II [Vibrio parahaemolyticus RIMD 2210633]
 gi|260362520|ref|ZP_05775446.1| DNA helicase II [Vibrio parahaemolyticus K5030]
 gi|260877200|ref|ZP_05889555.1| DNA helicase II [Vibrio parahaemolyticus AN-5034]
 gi|260897243|ref|ZP_05905739.1| DNA helicase II [Vibrio parahaemolyticus Peru-466]
 gi|260901376|ref|ZP_05909771.1| DNA helicase II [Vibrio parahaemolyticus AQ4037]
 gi|28808039|dbj|BAC61276.1| DNA helicase II [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088957|gb|EFO38652.1| DNA helicase II [Vibrio parahaemolyticus Peru-466]
 gi|308094142|gb|EFO43837.1| DNA helicase II [Vibrio parahaemolyticus AN-5034]
 gi|308107188|gb|EFO44728.1| DNA helicase II [Vibrio parahaemolyticus AQ4037]
 gi|308112661|gb|EFO50201.1| DNA helicase II [Vibrio parahaemolyticus K5030]
          Length = 724

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 103/549 (18%), Positives = 182/549 (33%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+      ++R        HIL+DE QDT+ I
Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +T               +  VGD+ QSIY + GA+ + + +  R         
Sbjct: 230 QYAWLRMMTG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTREFP------ 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 274 --SVTTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I                  
Sbjct: 311 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R + ++
Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALAYMRLMANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T++E           A          
Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRRAARDRGCTMWEASVAMLDEQVLAGRAAGALGRF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ I  L         H+    ++        +    G +    I+ L+E +  T + E+
Sbjct: 463 IELITALEDDTLEMPLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 523 PEEAEEMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 609 QKLYITYAE 617


>gi|226327092|ref|ZP_03802610.1| hypothetical protein PROPEN_00957 [Proteus penneri ATCC 35198]
 gi|225204310|gb|EEG86664.1| hypothetical protein PROPEN_00957 [Proteus penneri ATCC 35198]
          Length = 1203

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 144/978 (14%), Positives = 302/978 (30%), Gaps = 156/978 (15%)

Query: 21   WPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
            W     ++        +   + +   L K  + +   + T   +           +Q+  
Sbjct: 242  WHAHQHEIEAWITASGVDKRSYSSRFLPKWIEEITLWASTAETKSYQLPDCLVRFSQETL 301

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
             +K+  T+    +     E             +R     +    +  +     +    E 
Sbjct: 302  NEKS--TKGPAPEHILFVE------------IERLTKQSLTLRDVILINAIPEIRRGIEN 347

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K +   + F+DL+   +  LK+ +    +   I +     +IDE QDT   Q+ +  ++
Sbjct: 348  EKMRRGEMGFDDLLTRLDRALKR-EGGEALAQAIRERYPVAMIDEFQDTDPQQYRIFDAI 406

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
              ++            L  +GD KQ+IY+F GA+    ++ ++          Q      
Sbjct: 407  YGEY--------ENSGLLFIGDPKQAIYAFRGADIFTYIQARK----------QTSHHYT 448

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  ++RS   ++  V+K+F                +                        
Sbjct: 449  LNTNWRSAPGMVNAVNKLFMRSNAPFLFEHIPFIEVSSAEKNQDMAFVYHDKPISPFN-- 506

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKKRVIQAK 374
                     W +  +S+   +   I+A + A  I + +         +   G K+ + + 
Sbjct: 507  --------FWLAEGESVSTGNYEQIMAAQCAAQIRDWLSAGDQQQAWLIEQGTKKTVTSA 558

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            DI+VLVR R++  LI+     L      SV  ++R  + +    KDL+ L + +++ E +
Sbjct: 559  DIMVLVRSRREAILISDALNLLSIQ---SVFLSNRESVFETNEAKDLLWLLQAVVTPEKE 615

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                  L S LF FS   I  +        +  E    +      +          L  +
Sbjct: 616  RVLRASLASRLFGFSAKQIDDLNRSEAHWNSYVEKFADYYVLWQKR--------GVLPML 667

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL---NFTLRNEQNSYSSLQELI 551
             +    +     +L +  G ++            + E L   +  L +E      L + I
Sbjct: 668  RKIMMDNQIAENLLASIGGERRLTDIM------HIGELLQETSLQLDSEHALIRWLAQQI 721

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            S  +      +    ++ N VRI T+H +KGLE P+V L    +               +
Sbjct: 722  SHPDAQSENQQMRLESDRNLVRICTIHKSKGLEYPIVCLPFACNYQEQKG---------A 772

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC------ 665
            L  D           SR     + ++   +    E  RLLYV +TR+     +       
Sbjct: 773  LYHDREKFYAKLDIFSRP----ESLRLADEERLAEDLRLLYVALTRSKFCCYVGVAPLVK 828

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-------DEWIAYEWSTHH 718
             +   S     ++     ++      +  +    +   ++        D   A+ + +  
Sbjct: 829  GNKRKSGLTDLHKNALGYLLQQGEEGNSELLHQAIHALLDDNISVTTLDNISAHRYQSQL 888

Query: 719  PENTPLEREETIKQLMDEQKIPKK-------LFSPIKNDINEPYILNPS-----TIDTKG 766
               T LE     +Q+ D  +I                 D+ +   L  S       D KG
Sbjct: 889  APETKLEAAIFKRQIHDNWRITSYSGLTYQHSNRHYHFDLGDIESLVQSIAPGLDTDAKG 948

Query: 767  KTNLESLLS-----DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
            +     +         +    G  +H LL+V+    +   + ++    +     +  K  
Sbjct: 949  EKRQGEVDENSIHHFPRGAVAGTFLHSLLEVL-DFSQPIDEQWMQGQLSVQG--FDEKWA 1005

Query: 822  KNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKK--------------- 860
              L+  +  L   P+      +          E+     I                    
Sbjct: 1006 PLLVTWMETLFHTPLNSQGLCLADIPKSQQLDELQFYLPIEKELSSTQLTQLISQFDPLS 1065

Query: 861  -----------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------TH 900
                       + ++ G ID +   +   ++ +YK++       ++             +
Sbjct: 1066 RHCPALQFQQVEGMLKGFIDLVFSWEGKYYVVDYKSNWLGESSEDYTQEAMMNAMMDHRY 1125

Query: 901  IAQLSIYEKILKDSYPNK 918
              Q  +Y   L      +
Sbjct: 1126 DLQYQLYILALHRFLQQR 1143


>gi|218767076|ref|YP_002341588.1| DNA helicase II [Neisseria meningitidis Z2491]
 gi|6900436|emb|CAB72035.1| DNA helicase II [Neisseria meningitidis]
 gi|121051084|emb|CAM07354.1| DNA helicase II [Neisseria meningitidis Z2491]
          Length = 735

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 101/582 (17%), Positives = 192/582 (32%), Gaps = 118/582 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++  ++  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +                +FAVG
Sbjct: 204 QSNEI---LRRHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNTA----------VFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILASANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A+ I      +                  +I VL R    + +I           
Sbjct: 333 -----AQFIVDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IK  +A  R  ++ +DD + + ++  P        I  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTIENLQTAS 433

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            E           A    +K    ++ I  L +     S  +    IL      + + ++
Sbjct: 434 QEQGITLWQAACNAGAKATKIAAFVRLIEALRNQVGQMSLSEIIVGILKDSGLTEHYRTQ 493

Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566
            G   + +D LDE +N  +    E +++ +L +         +++ L        +    
Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFETLPDNISDDPAFPILAFLSNAALESGENQAG 553

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A    V++MTVH AKGLE   VFL       F  +                         
Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                        ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|294792591|ref|ZP_06757738.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27]
 gi|294456490|gb|EFG24853.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27]
          Length = 1251

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 116/699 (16%), Positives = 224/699 (32%), Gaps = 64/699 (9%)

Query: 28  VSDINKYVSLSME-TGNPTILKKAQTLQQASQTQCIEERFSLLSSF------FLTQK--- 77
              + +   + ++ TG             A       + +  +         F+  +   
Sbjct: 237 RERLERMEQILLDPTGPHKWQNIYDNQLAALGMLSAAQTWDDMGEACKHVDTFIKDQFRM 296

Query: 78  FTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRD---RFNTYKMFKSTLASLTLA 130
            + +       +  +   L    K+ LK  Q     + +   +      +      + L 
Sbjct: 297 GSKEAQAYDPILVAEFKSLGGQNKDDLKAMQAAIFTVPEATLQDQFKAQYPIIEGLVELT 356

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEV 185
              +  Y + K++  ++DF DL      LL     +     + +  ++      I++DE 
Sbjct: 357 IAFHQAYRDMKQEQGIMDFSDLEHLCLALLVEPGTEDDPQPSDVAKELQDTFKEIMVDEY 416

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q  +I  +           S     F VGD KQ+IYSF  A+    + +     
Sbjct: 417 QDTNGVQETIINLI-----------SRIDNRFYVGDVKQAIYSFRMADSSLFMEKYNTYG 465

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR---- 301
                       I+L  +FRS A+IL   + +F           + T        R    
Sbjct: 466 ----GNDAVERRIDLAKNFRSDANILAATNFLFYQIMTEDAAELNYTEAESLIPGRIVED 521

Query: 302 ---IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                  G V+L    VS+     +   E      D      +       I   I  +  
Sbjct: 522 APEDWIGGDVELQLLDVSKDTLGASESDE------DEGDDPENNERELDFIIQKIKEIHA 575

Query: 359 TDTIF--SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                   +G  R I+ +D  +L R                    I  V N+R    +  
Sbjct: 576 AKKQVQNPDGTFRQIEWRDFAILRRSLAGWGTRAV---EAMRQAGIPAVVNERDGYFEAQ 632

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            I+ L+AL   I + E DL    +L S L     +++  +        +++  +  +A  
Sbjct: 633 EIQLLLALLSVIDNPEQDLPMAAVLHSGLVGLDANELGALRLS--GDGSLWSLMPAYAQE 690

Query: 477 -GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLN 534
               +    I ++     +++     D    I  ++           G      +    +
Sbjct: 691 AQDERLLAFIGHMERWRTLSRRHGVTDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYD 750

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAH-----SANHNEVRIMTVHTAKGLESPVVF 589
                E + +  L   +  +E    + +        S   N VR+MT+H +KGLE PVVF
Sbjct: 751 RAKGYEASGFRGLFRFLRFVESLRDSNQDMPLANVVSEADNVVRLMTIHKSKGLEFPVVF 810

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L     +        ++ I  +            +          +    + + + E  R
Sbjct: 811 LSGVQKRFNMMDLRSELLIDKNAGLGLKGYFPDIRVSFPTMPWFYVKDVKEAALKAEEQR 870

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           +LYV +TRA D+L +          K    T  +++ ++
Sbjct: 871 ILYVALTRARDKLFMTGFIKGFKNSKGVLSTIGELIKNA 909



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 67/224 (29%), Gaps = 14/224 (6%)

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
            + +    + +  E +   ++   E      L  PI         L  S    +    L+S
Sbjct: 1021 DATRRTAKISVSELKRRFQERELEAGTIDTLNEPIATVEVSADALANSVFG-RKPQALQS 1079

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-SITRL 831
                      G ++H+ +Q +  +   +               +  +E   L   S+ + 
Sbjct: 1080 EDDVLTGAQWGTLMHEAMQWLPLVKYTQASLTKELDALVAKGTFTEEERNLLSDTSLYKF 1139

Query: 832  LENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFE 882
                +    + +     E+  S               +++ + G ID          + +
Sbjct: 1140 FNFDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGIIDTAFEEDGEWVLVD 1199

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            YKT        E +   +  Q+ +Y++ L+       +    IY
Sbjct: 1200 YKTDRVTSG--EELIKRYKIQMDLYKEALQRL-TGMPVKACYIY 1240


>gi|282860904|ref|ZP_06269970.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE]
 gi|282564640|gb|EFB70176.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE]
          Length = 815

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 114/655 (17%), Positives = 204/655 (31%), Gaps = 128/655 (19%)

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              +   L++         P K    +    K  +LK +L        +          F
Sbjct: 178 DAADSKRLMALVCRDLDLDP-KRYPPKSFTAKVSNLKNEL------IDEETFAGQAADGF 230

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           + T           A Y+   ++   LDF+D+I+ T  LL+       +     +   H+
Sbjct: 231 EKT------LAQAYALYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHV 281

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+  Q+ ++R L            +P  L  VGD  QSIY+F GA  + +L+ 
Sbjct: 282 LVDEYQDTNHAQYTLVRELVG----PAGEKDAPGELCVVGDADQSIYAFRGATIRNILQF 337

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           +              + I L  ++RST  IL+  + V    E+ +  +            
Sbjct: 338 EEDYP--------DATTIMLEQNYRSTQTILSAANAVIERNESRRPKN------------ 377

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW    +                        +    A+ IA  I  +    
Sbjct: 378 ---------LWTNAGAGTRITGYVA--------------DTEHDEAQFIADEIDRLTDAG 414

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                      +A D+ V  R    + +   +         +           +   ++D
Sbjct: 415 E---------AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRD 461

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS 479
           ++A  R + + ED +    +L  P     +     I      E  +  + +++       
Sbjct: 462 VLAYLRVLANPEDTVPLRRILNVPKRGIGDRAEAMIDALSLREKISFPQALRRVDEAYGM 521

Query: 480 KFQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
             +           + EL  I +  + P      +L       +  +    +    ++ L
Sbjct: 522 AARSANAVKRFNTLMEELRTIVESGAGPAVVLEAVLERTGYLAELQASTDPQDETRVENL 581

Query: 530 DEFLNFTLRNEQ-----NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
            E     L  EQ         +L E + +  L      I          + +MT+HTAKG
Sbjct: 582 QELAAVALEFEQDRAEEEGAGTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKG 641

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVFL      VF H                                       +  
Sbjct: 642 LEFPVVFLTGLEDGVFPHMRALG----------------------------------QVK 667

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             EE  RL YVG+TRA ++L + + +  S   + +       + +        K+
Sbjct: 668 ELEEERRLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPDQHLEWKR 722


>gi|320157772|ref|YP_004190151.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O]
 gi|319933084|gb|ADV87948.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O]
          Length = 724

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 182/549 (33%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL++     +IR        HIL+DE QDT+ I
Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLREN---KFIREHYQARFKHILVDEFQDTNNI 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +            
Sbjct: 230 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I        +         
Sbjct: 311 -------TDGVEGEPISIYSAYNELDE-------ARFAVNKIKEWQDKGGVL-------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R I ++
Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLIANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T++E                      
Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETVRFAARDRGCTLWEASIALIEEKVLTGRAAGALSRF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ I  L   +     H     ++ +      +    G +    I+ L+E +  T + E+
Sbjct: 463 IELITALEDDSFEMPLHIQTDHVIKSSGLYTMYEQEKGEKSKARIENLEELVTATRQFEK 522

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 523 PEEAEEMSLLTAFLTHAALEAGEGQADDFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 609 QKLYITYAE 617


>gi|239625645|ref|ZP_04668676.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519875|gb|EEQ59741.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1326

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 139/735 (18%), Positives = 265/735 (36%), Gaps = 86/735 (11%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKA----QTLQQASQTQCIEERFSLLSS 71
           +++D           ++  + +  E   P   +      +   QA  T   E R+  L  
Sbjct: 216 LFQDTARQMEELGGQLDTALEVCREENGPLAYEPMLMSDRAKIQAIGTAACEGRYEQLYQ 275

Query: 72  FFLTQKFTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRDRFNTYKMFKSTLA-- 125
             L   F    +I ++EI+          ++++KK+  +  ++    +  ++ +S     
Sbjct: 276 RLLNMSFDRLASIRSKEIDGDKKSFVTVCRDRVKKAVGKCRELYGSQSPDEVVESIRGTR 335

Query: 126 -----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDV------------SA 167
                 L L +  +  Y  AKK+  VLDF DL     + LL+K                +
Sbjct: 336 VVIQKLLELTERFDNEYRAAKKERNVLDFNDLEHLALEVLLEKDPDWEEGEDEGAARRPS 395

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +  ++ ++   IL+DE QD++ +Q  +I S++ +             +F VGD KQSIY
Sbjct: 396 PVADELSRQYEEILVDEYQDSNYVQEALITSISRE-------RYGHPNVFMVGDVKQSIY 448

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQ 285
            F  A P+  + +             ++ +IEL  +FRS   +LT V+ VF      N  
Sbjct: 449 RFRLARPELFMEKYESYAS----VDGQYQMIELQQNFRSRESVLTSVNDVFYQIMTKNLG 504

Query: 286 GLSEDSTTTIRHRSSRIG-QVGTVQ--LWEQVVSQHDSQCNPQQ-------ESWTSYFDS 335
           G++    T +   +        TV    WE+      +    +        ES     + 
Sbjct: 505 GITYTRDTALYPGAVFKEVGPDTVTGMDWEKEGGALSAGTPTELLLVDTGSESLKQLDED 564

Query: 336 LPQESSASILARRIAYTISNMIGTDTIF-----SNGKKRVIQAKDILVLVRKRKDTPLIT 390
               ++  + AR  A  I  ++  D             R  +  DI++L+R         
Sbjct: 565 ALDYTARELEARMAARRIRELVSGDEGLMVWDKEKEAYRRARLGDIVILLRSMTGWS--- 621

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
            +   +  +  I      R    + + ++ +++L   I +   D+    +++SP+   S+
Sbjct: 622 EVFVNVLMNEGIPASAQTRTGYFNTVEVETILSLLSVIDNPMQDIPLAAVMRSPIVGMSD 681

Query: 451 DDIFKI---------------------CTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +++  +                          E+ T ++   + A     K  H+   ++
Sbjct: 682 EEMAWMVAAFKKNSKKGQDRGVYGAWSMWMEAESGTFHKVPGEAAASIRKKLSHLSGLLN 741

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            L   A++   H+    +               G      LD  +      E  SY  L 
Sbjct: 742 GLRREARYLPIHELLYRVYRDSGYYDYVSAMPAGETRRGNLDMLVEKAAAYEATSYKGLF 801

Query: 549 ELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +  +E+                  N VRIM++H +KGLE PVVFL   G +       
Sbjct: 802 HFVRYIERLKKFDTDFGEAATAGEQDNTVRIMSIHKSKGLEFPVVFLSGMGKRFNKQDAY 861

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            ++ +   L           + K+       L + ++  T  E  R+LYV MTRA ++LI
Sbjct: 862 GRILLDADLGVAADYLDLDLRVKAPTLKKQALKRRMELETMGEELRVLYVAMTRAKEKLI 921

Query: 664 ICKHSNTSNEKKSNQ 678
           +     +   K +  
Sbjct: 922 MTATDRSLEAKLAKW 936



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 99/355 (27%), Gaps = 22/355 (6%)

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                     H++   I         +   I +  +R ++++     +      E      
Sbjct: 963  MAKPAIPDDHMQLQCIQVRELVGEEVGRQIVRQMTREDLLAVDRNQVYDREFGERLEAAV 1022

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
                   D   +    + S  KK +Q    +    + + +     ++    +       Y
Sbjct: 1023 NYRYPHMDDTGLYAMVSVSELKKQSQIGRSEDTIGTGNVETEGVGLEYLGKLAGGAGQEY 1082

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI----KNDINEPYILNPSTIDTKGKT 768
                          +       +  K P     P      + + +P       +     +
Sbjct: 1083 PGQPAGGTGQEHLEQPAGGTGQEYLKQPAGGTGPEQLKQPDALTQPQKRPAPEVRAVPDS 1142

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS- 827
                  + ++   RG   H  L+ I        +    +  T   + +  +E +  + + 
Sbjct: 1143 GRIQPGTPSRGALRGTAYHAALEHISFQDIKSLEETEAALETLVEQGYLNQETRGFIRAG 1202

Query: 828  -ITRLLENPMMTTAMSCDS----YSEVSVSGKINCPKKD-------IIISGRIDQISISQ 875
             I   LE+P+        +    + E      I             ++I G ID      
Sbjct: 1203 DIWAFLESPLGRRMAQAQAEGRIHKEQQFIIGIPARDMGRGDSDELVLIQGIIDAYLEEP 1262

Query: 876  QNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
              + + +YKT H   +  E     +   +  QL  YE+ L      K +   +IY
Sbjct: 1263 DGLVLIDYKTDHVPKENREQGAAMLAARYRVQLDYYERALTQL-TGKKVKERVIY 1316


>gi|91228031|ref|ZP_01262116.1| DNA helicase II [Vibrio alginolyticus 12G01]
 gi|269964541|ref|ZP_06178780.1| DNA helicase II [Vibrio alginolyticus 40B]
 gi|91188260|gb|EAS74559.1| DNA helicase II [Vibrio alginolyticus 12G01]
 gi|269830668|gb|EEZ84888.1| DNA helicase II [Vibrio alginolyticus 40B]
          Length = 724

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 179/549 (32%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+      ++R        HIL+DE QDT+ I
Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +            
Sbjct: 230 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNTLIANNTERMGK---------------------ELW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I                  
Sbjct: 311 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R I ++
Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLIANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T++E           A          
Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWEASVAMLDEKVLAGRAAGALSRF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ +  L         H     ++        +    G +    I+ L+E +  T + E+
Sbjct: 463 IELVTALEDDTLEMPLHHQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 523 PEEAEDMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 609 QKLYITYAE 617


>gi|269218850|ref|ZP_06162704.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211961|gb|EEZ78301.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 831

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 95/597 (15%), Positives = 185/597 (30%), Gaps = 120/597 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +  +  A Y+   ++   +DF+DLI++T D+L+       +     +   HIL+DE QD
Sbjct: 172 QVLAHAYAAYQIRLRQANAMDFDDLIMSTVDVLRSHPD---VADHYRRRFRHILVDEYQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E++R+LT     G     +   L  VGD  QSIY+F GA  + +   ++     
Sbjct: 229 TNRAQYELVRALT-----GTAEDDNHGELTVVGDADQSIYAFRGATIRNIEDFEKDFP-- 281

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +   I L  ++RST  IL+  + + +     +                      
Sbjct: 282 ------EARTILLEQNYRSTQSILSAANGIIANNSGRRPKR------------------- 316

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW         + + ++           + +        +   I  +           
Sbjct: 317 --LW-------TDRGDGEKIVGYVADSEADESA-------FVVSEIDRLRDDA------- 353

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +  +  +         I           +   IKD +A    
Sbjct: 354 --GISYGDVAVFYRTNAQSRAVEDMF----VRSGIPYRVIGGTRFYERREIKDALAYLHA 407

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480
           I++++D +S   +L  P           +         +    +    +    +      
Sbjct: 408 IVNRDDTVSIRRILNMPKRGLGAKSEEAVAMHAARWDVSFGAALCDVGDPHPERGPVSGI 467

Query: 481 -------FQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
                      +  +     +A+   +P       +          S    +    ++ L
Sbjct: 468 GKKASATMAGFVSMLQSGRGMAEAGAAPDAILDFAMEESGYLDMLRSSDDPQDESRLENL 527

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPV 587
            E  +  +   + +      L   L+Q             +  EV +MTVHTAKGLE PV
Sbjct: 528 AELHSVAVDFHKANPD--ATLADWLDQVSLVSDADQLADGDEGEVTLMTVHTAKGLEFPV 585

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VF+       F H                                         +   E 
Sbjct: 586 VFVTGLEDGTFPHMRSLIDP----------------------------------AELAEE 611

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            RL YV +TRA  +L I + +  ++     +      + +   +    ++ + +   
Sbjct: 612 RRLAYVAVTRARQRLYITRAAARASWGAPQEFPPSRFIEEIPDSLIDWRRSESSADA 668


>gi|149372162|ref|ZP_01891432.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49]
 gi|149354929|gb|EDM43491.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49]
          Length = 780

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 107/654 (16%), Positives = 197/654 (30%), Gaps = 133/654 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y +   K   +DF+DL++ TN+LL +      +  K      +IL+DE QDT+
Sbjct: 183 LGDIYQRYVDKCFKAGAMDFDDLLLKTNELLTRFP---QVLAKYQDRFRYILVDEYQDTN 239

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++++L++ F          + +  VGD+ QSIY+F GA    +L  ++       
Sbjct: 240 HSQYLIVKALSDRF----------QNICVVGDDAQSIYAFRGANINNILNFQKDYDN--- 286

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                     L  ++RST +I+   + +    +        +                ++
Sbjct: 287 -----VKTFRLEQNYRSTKNIVNAANSIIEKNKTRLDKVVWTAN---------DDGAKIR 332

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +   +    +                           R +A  I         F N    
Sbjct: 333 VNRTMTDGDEG--------------------------RFVASDI---------FENAMNE 357

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +      +L R    +  +    R       I               IKD++A  R +L
Sbjct: 358 QLPFDKFAILYRTNAQSRAMEDALR----KKDIPYRIYGGLSFYQRKEIKDVIAYLRLVL 413

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET--------VYEYIQKFANCGISKF 481
           + +D+ +   ++  P     +  I K+    +  E         +     K       K 
Sbjct: 414 NPKDEEALKRVINYPARGIGQTTIDKLIVAANHYERSMFEVMQVLDRVDLKINKGTRGKL 473

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
           Q  +  I     +            I        +       E    ++ ++E LN    
Sbjct: 474 QDFVTMIQSFQVLNNGYDAFMMAEHITKKTGLVTELKKDGTPEGIARMENIEELLNGMSD 533

Query: 539 N--EQNSYS----SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
              EQ   +    SL E + ++             + N+V +MTVH AKGLE P V++V 
Sbjct: 534 FVEEQKEIADTNGSLAEFMEDVALATDADN--DKGDDNKVALMTVHLAKGLEFPYVYIVG 591

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
              ++F                                          +S  EE  RL Y
Sbjct: 592 MEEELFPSGMSMNT----------------------------------RSELEEERRLFY 617

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V +TRA  Q  +               + Y           R       + +     I  
Sbjct: 618 VAVTRAEKQATLTYTQ-----------SRYRWGKLIDAEPSRFITEIDESFLEYLTPITE 666

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           +      ++      +  K  + +    K    P +  + +   L P   DT  
Sbjct: 667 QRYKPLIDSDIFGEVDKSKLRLKKPTAGKAPSGPTEEQLRKLRRLRPVKSDTDK 720


>gi|227892257|ref|ZP_04010062.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
 gi|227865898|gb|EEJ73319.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741]
          Length = 747

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 119/807 (14%), Positives = 243/807 (30%), Gaps = 133/807 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L            
Sbjct: 33  GAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERVNNLMGEGAEDIWVST 92

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L +        ++      +++   +K+ L     +  K   R     +  +
Sbjct: 93  FHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQVLNDLNIDTKKYDPRAILSVISNA 152

Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L               +       Y+     N  +DF+DLI+ T  L  +   +  
Sbjct: 153 KNDLLDPKDYAQQANGPFEEIVSKAYFEYQNQLANNQAMDFDDLIMQTIRLFNESPET-- 210

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 ++ ++I +DE QDT+  Q+E++  L   +          R L  VGD  QSIY 
Sbjct: 211 -LEFYQRKFHYIHVDEYQDTNEAQYELVNKLARKY----------RNLCVVGDADQSIYG 259

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + ++  +              ++I+L  ++RST +IL   + V     N +  +
Sbjct: 260 WRGANMENIMNFEEDYP--------DATVIKLEQNYRSTKNILAAANNVIENNVNRKDKT 311

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              +  +    ++  +       A  
Sbjct: 312 ---------------------LW-------TDNKQGDKIHYYRANNANEE-------AYY 336

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   I  +              D  +L R    + +I            I      
Sbjct: 337 VVKKIQEQIRNNGR---------HYGDFAILYRTNAQSRIIEETF----VKTNIPYKLVG 383

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I D +A  R + +  D +SF  ++  P  +     + K+    +    ++ 
Sbjct: 384 AHKFYDRKEIMDTLAYLRLVTNPADSMSFERIVNEPKRSIGSVTVGKLRTFSQIHGMSML 443

Query: 468 EYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  +  A         ++ +   + I +L    +  +  +    IL     +        
Sbjct: 444 EASKSAALAGVSAKASNELEKFAEMIEQLHEYQKAHNVTEVTERILDVTGYKANLQREDT 503

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQE---LISELEQYPPTIKRAH-SANHNEVRIM 575
            E    ++ L+EFL  T + +Q+     +E    +  L        +       +EV +M
Sbjct: 504 LENRNRLENLEEFLTVTKQFDQDWEPEDEESDPFVDFLADLALVSDQDSVEEEPDEVTLM 563

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE PVVFL+     +F                                     
Sbjct: 564 TLHAAKGLEFPVVFLMGLEEGIFPLS---------------------------------- 589

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
              + ++  EE  RL YVG+TRA ++L +    +     KS        + +      + 
Sbjct: 590 RAVMDENELEEERRLAYVGITRAEEELYLTNSISRMLYGKSQNNPASRFIEEIDEELIQS 649

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
               + ++    +           +        T+++  +     +      K       
Sbjct: 650 DNQTVASTTLTSKRTRSREVPFSKKPKYRMPAGTVERPKETGADKQSWNIGDKISHKAWG 709

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNR 782
                 +   G+     +  + +   R
Sbjct: 710 TGTIVKVSGDGEDTELDIAFEGKGIKR 736


>gi|308069947|ref|YP_003871552.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681]
 gi|305859226|gb|ADM71014.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681]
          Length = 1339

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 129/856 (15%), Positives = 264/856 (30%), Gaps = 112/856 (13%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERF 66
             I  D         S + +    +M+ G P              + L Q  +TQ     +
Sbjct: 230  SILADAALSLRGAASLLEQAHETAMQPGGPAPYAVTLQEDAAMVKGLLQELETQPWASLY 289

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                +    +    +K+     + ++   L+E  KK   +              +   A+
Sbjct: 290  DHFQAAAFGKLKPVKKDQTEPALQERVKTLREAAKKMITDMKASLFGRRAEAYLEELHAA 349

Query: 127  LTLAKYLNA-------HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR------YKI 173
              L   L          +++ K+   ++DF DL      +L+  D + +         + 
Sbjct: 350  APLMDELVETVIVFGERFQQHKQSKGLVDFGDLEHYCLKILRHPDSTPYKLLPSDAALEY 409

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
              + + +L+DE QDT+ +Q +++R ++ +          P   F VGD KQSIY F  AE
Sbjct: 410  KAQFDEVLLDEYQDTNTVQEDIVRLVSRE---------EPGNRFMVGDVKQSIYRFRLAE 460

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDS 291
            P          Q+ +    +   +I+L  +FRS  +++  V+ VF      +   +  D 
Sbjct: 461  PGL---FLNKYQRYSMQEQEDGFLIDLARNFRSRQEVVDAVNLVFRQIMSVDVAEIEYDE 517

Query: 292  TTTIRHRSSRIGQVG-------TVQLWEQV-------VSQHDSQCNPQQESWTSYFDSLP 337
               + H +S               +L            +   S+   +     S    L 
Sbjct: 518  RAWLVHGASYPDPSDQDAASVYAPELLLVDKGGQGLSEASELSETGDESALQESELAELA 577

Query: 338  QESSASILARRIAYTISNMIGT------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
            +  +A + AR IA  I  + G                R     DI++L+R      +   
Sbjct: 578  ELETAQLEARAIAQRIKELTGDTGQPLLIYDRGLKAMRPAVYGDIVILLRS---ASVWAP 634

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
            L         I   G           ++ +++L   I + + D+    +L+SP+   +ED
Sbjct: 635  LIVEELRLEGIPASGEQTTGFFKATEVEVMLSLLHIIDNPQQDIPLASVLRSPIVGLTED 694

Query: 452  DIFKICTQRHETETVYEYIQKFANCGIS-------------------------------- 479
            ++ +I  ++ +       +       +                                 
Sbjct: 695  ELAQIRLEKPDGLFYGALLAAAEADPLEESEKGISAEIMELDLFPKDSFSSSDFGNRNDG 754

Query: 480  -----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFL 533
                 + +  ++ +      A+  S       +L              G++  + L    
Sbjct: 755  NTLSARLRSFLRNLEAWRQEARQGSLSALIWNVLEETGYLDWVGGLPGGSQRQNNLRALY 814

Query: 534  NFTLRNEQN-SYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +   + E + S   L   ++ + +              +     VRIMT+H +KGLE P+
Sbjct: 815  DRARQYETSTSNRGLFRFLAFISRLRERGGDLGSISGGTEPDQAVRIMTIHKSKGLEFPI 874

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            VF+  T              +   L   P       +          + +  +     E 
Sbjct: 875  VFIAGTAKMFNQQDLNAPFLMHKELGFGPKYVEEQNRVSYPTLPNLAIRRRSQLELLAEE 934

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             R+LYV +TR  ++LI+         + +      +       +          + +   
Sbjct: 935  MRVLYVALTRPREKLIMTGTVKDLASRAAGWARAKEHTEIVLPDYMLAAGRSYLDWVGSA 994

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--DTK 765
                         +  L RE    Q     ++     +     I     L+ S +  D +
Sbjct: 995  LIRHP--------SATLLREAAGDQDGYYHRLEHMPGTDWLFKIVASETLSGSRVNSDHE 1046

Query: 766  GKTNLESLLSDNQTFN 781
             + + E      +   
Sbjct: 1047 EEVSGEERQKKTEALR 1062



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/368 (9%), Positives = 101/368 (27%), Gaps = 38/368 (10%)

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            ++ +   +       +    S    +  + L++         Y+RL ++  T    +++ 
Sbjct: 973  EIVLPDYMLAAGRSYLDWVGSALIRHPSATLLREAAGDQDGYYHRLEHMPGTDWLFKIVA 1032

Query: 665  CKHSNTSN-EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
             +  + S       +    +            + + L      D   A  W+  +     
Sbjct: 1033 SETLSGSRVNSDHEEEVSGEERQKKTEALRNAELVDLNEESETDIEAALSWTYPYERAGK 1092

Query: 724  LEREETIKQLMDEQKIP-----KKLFSPIKNDINEPYILNPSTIDTKG---KTNLESLLS 775
                 ++ ++    ++        L          P     S         +        
Sbjct: 1093 TAANTSVTEMKRWLEMQEMGSDDWLNLSTSLLAELPEDQEDSHTGGSQLHLRRPKFMGNQ 1152

Query: 776  DNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                  RG + H L+  +     +     +        +   L            I R  
Sbjct: 1153 RLTPTERGTVYHTLMLHLPLDGGMSAEVIEETKARLLNQRM-LLDVHAKALDTDKILRFF 1211

Query: 833  ENPMMTTAMSC-DSYSEVSVSGKINC-----------------------PKKDIIISGRI 868
             + + +  +       E+  +  +                             ++++G I
Sbjct: 1212 TSELGSRMLGASHVQRELPFTYTMRAADYWNHSLPSVLPGQETDSEVGQDGDKVLMNGII 1271

Query: 869  DQISISQQNIFIFEYKTHHHVP-QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            D +  + + + + +YKT      + + H+   +  QL +Y +++++    K     L ++
Sbjct: 1272 DCLFETPEGLVLVDYKTDRISEYRTLSHLTDQYRFQLELYARVIEEITGKKVAEKWLYFL 1331

Query: 928  SEPKVFII 935
               +   +
Sbjct: 1332 EAGESVRL 1339


>gi|269128418|ref|YP_003301788.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183]
 gi|268313376|gb|ACY99750.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183]
          Length = 768

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 117/760 (15%), Positives = 216/760 (28%), Gaps = 159/760 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V                 + ++ Q L            
Sbjct: 34  GAGSGKTRVLTHRIAYLLAERDVHPAQILAITFTNKAAGEMRERVQALVGPRSGAMWVMT 93

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM------ 119
           F       L ++           I   +    ++L       + +  R    K       
Sbjct: 94  FHSACVRILRREARRLGFPSNFSIYDAAD--AQRLMALVCRELDLDPRRYPPKSFSAQVS 151

Query: 120 -------------FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                         +++             Y+   ++   +DF+DLI+ T  LL+    +
Sbjct: 152 NLKNELIDYEAFKARASTHLEQKLAEAYEMYQARLQQAGAMDFDDLIMTTVHLLQAFPEA 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           A       +   HIL+DE QDT+  Q+E++R LTE           P  L  VGD  QSI
Sbjct: 212 A---EHYRRRFRHILVDEYQDTNHAQYELVRLLTE----SPGEDVGPAELCVVGDADQSI 264

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+F GA  + +L  +R             + I L  ++RST  IL+  + V     + + 
Sbjct: 265 YAFRGATIRNILEFERDFP--------DATTILLEQNYRSTQTILSAANAVIERNAHRKP 316

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               S                             Q   ++       +   +       A
Sbjct: 317 KRLWS----------------------------DQGEGEKIVGYVADNEHDE-------A 341

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  +  +             + +  D+ V  R    + +   +         +    
Sbjct: 342 AFVAAEVDRLTDAG---------LARPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKV 388

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  +   ++DL+A  R + +  D +S   +L  P     +     +      E  T
Sbjct: 389 VGGVRFYERKEVRDLLAYLRVLANPADTVSLRRILNVPRRGIGDRAEACVEAHAARERIT 448

Query: 466 VYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
            +E ++        A       +  +  + +L   A   +P +    +L       +  +
Sbjct: 449 FWEALRTPEQVPGMAPRSAKAVREFVALMDDLRERAATATPAELIEAVLTETGYLAELQN 508

Query: 520 RFGNE---VIDVLDEFLNFTLRNEQN------------------SYSSLQELISELEQYP 558
               +    I+ L E        E                    +   L + + ++    
Sbjct: 509 SRDPQDETRIENLRELEAVAREFEDRLAERVPAAEEEEEEAPSGAAGRLVDFLEQISLVA 568

Query: 559 PTIKRA-------------HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
                                     V +MT+HTAKGLE PVVFL      VF H     
Sbjct: 569 DADAIPGTKGAPIPPGERAPEDEQGVVTLMTLHTAKGLEFPVVFLTGMEDGVFPH----- 623

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                        L         EE  RL YVG+TRA  +L + 
Sbjct: 624 -----------------------------LRAMSNPQELEEERRLAYVGITRARQRLYLT 654

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           +    S             + +   +  + ++     +  
Sbjct: 655 RAVMRSAWGAPQVNPASRFLSEVPSSLVKWEREAAMPAPG 694


>gi|327451777|gb|EGE98431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA2]
          Length = 810

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +    LDF+DLI+ T  +L++      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  + + I +        +    IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +   +  
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|325498396|gb|EGC96255.1| exonuclease V subunit beta [Escherichia fergusonii ECD227]
          Length = 1173

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 126/878 (14%), Positives = 266/878 (30%), Gaps = 129/878 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +       D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 296  RHPLFDAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDAALR-S 354

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +                L  +GD K
Sbjct: 355  ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HQQPETALLLIGDPK 406

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 407  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 456

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++      G    V          + +  P  + W    +        S
Sbjct: 457  AFMFREIPFVPVKSAGKNRGLHFAV----------NGEKQPAMKMWLMDGEYCSVGDYQS 506

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 507  TMAQVCAMQIRDWLQAGQRGDALLMNGDTSRPVRASDISVLVRSRQEASLIRDALTLL-- 564

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  + T
Sbjct: 565  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMTPEREDTLRSALATSMMGLNALDIENLNT 623

Query: 459  QRHETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                 ET ++ + +  +     ++   V+  +  L       S  +    +L    G ++
Sbjct: 624  ----NETAWDAVVEEFDGYRQLWRKRGVMPMLRAL------MSARNIAENLLATAGGERR 673

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 674  LTDIL------HISELLQQAGTQLESEHALVRWLSQHILEPDSNAASQQMRLESDKHLVQ 727

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L    +     +                      ++    +   
Sbjct: 728  IVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------QSFEAMLDLSEAK 774

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            + ++  +     E  RLLYV +TR+     L +        +KK         +      
Sbjct: 775  ESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGPTDVHQSALGRLLQK 834

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPEN------TPLEREETIKQLMDEQKIPKKLFS 745
             E      L   I           T    +           EE   + +          +
Sbjct: 835  GEPQDAAGLRACIESLCDDDITCQTPPRPDNIRWHMVESASEELSARNLQRSPGDNWRVT 894

Query: 746  PIK------------NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                                      + +  K +    +     +  + G  +H L + +
Sbjct: 895  SYSGLQQRGHGIAQDLLPRLDIDAAGTAVSEKSEEPQLTPHQFPRGASPGTFLHSLFETL 954

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVS 850
                                + W        + +I R   N     ++     D   E+ 
Sbjct: 955  DFSQPVDSAWVREKLELDGFETWWEPVLTEWIDAILRAPLNETGISLSQLTERDKQVEME 1014

Query: 851  VSG--------------------------KINCPKKDIIISGRIDQISISQQNIFIFEYK 884
                                          ++  +   ++ G ID +   Q   ++ +YK
Sbjct: 1015 FYLPITKPLIASQLDTLIRQFDSLSAGCPPLDFLQVRGMLKGFIDLVFRHQGRYYLLDYK 1074

Query: 885  THHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
            ++        +             +  Q  +Y   L  
Sbjct: 1075 SNWLGEDSSAYTQQAMAAAMQEHRYDLQYQLYTLALHR 1112


>gi|326317369|ref|YP_004235041.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374205|gb|ADX46474.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1182

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 145/960 (15%), Positives = 309/960 (32%), Gaps = 94/960 (9%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSM-ETGNPTILKKAQTL-QQASQTQCIEERFSLLSS 71
              +      L            + ++      T  K A  +      T  +EER   L  
Sbjct: 243  AGLEHPAQALAAEDCRARWLAWAAALGSESGKTPQKAADAIVTAFCDTTDLEERLEALRG 302

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                 +       + +          ++ ++        R +   +   +       L +
Sbjct: 303  ALFVAREDRLTRHLEK------FAAAQEAERELQALCLARRQHEAWLHQQR---MARLTR 353

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L A +   K+    +D  D+      +L    +S W++ ++D  + H+LIDE QDT+ +
Sbjct: 354  ALVAAFGALKRDRGWVDMNDVERTALVMLSDPVLSGWVQERLDARVRHLLIDEFQDTNPL 413

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW+ + +    +  G      P ++F VGD KQSIY F  AEP+     +          
Sbjct: 414  QWQALHAWLASYV-GTGGGQHPPSVFIVGDPKQSIYRFRRAEPQVFRAAQ-----AFVRQ 467

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            G    ++    + R+  +++  V+ V    +     +        H +      G ++L 
Sbjct: 468  GMGGDLLACDHTRRNAPEVIAAVNAVMGAAQAQGDYAGFRD----HTTESRDAGGLLRLP 523

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +  D +             +                 +          +      +
Sbjct: 524  PIEDAADDDENEAGGPDARPDRLAWRDSLVQPRHEAEETLRMRECQQAARWVAGQIAAGV 583

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             A+ I+VL RKR     +    R L     +  V  ++  L +   ++D++AL   ++S 
Sbjct: 584  PARQIMVLARKRDRLSALQDALRDL----HLPCVQPEKVELCEAPEVQDVVALLDVLVSP 639

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------------ 479
              DLS    L+SPLF   +  + ++   R + E       +                   
Sbjct: 640  GHDLSLARALRSPLFGMDDALLVRVAVARRDAERGAARGLQEGGVPGWLELLADRALLDA 699

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNF 535
            +   +   +    H  +   PHD    I   +    ++ +       + V+  L   L+ 
Sbjct: 700  EMPGLSHDLRLYRHWVEQWPPHDALDAIYRHRDVLARYAAASPAPLRSGVLANLRALLSA 759

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             L+ +   Y +    +  L++          A  + VR++T+H AKGLE+  V L+DT  
Sbjct: 760  ALQQDGGRYLTPYAFVRALKRPGQRAPGRVDA--DAVRLLTIHGAKGLEADAVLLLDTDG 817

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +    + +  +   P     P   +++    S     +D +   +   Q E    LYV M
Sbjct: 818  RAQKAETMGVLVDWPGELPAPRRFVFLASEASPPPSAADALAAEQAERQREEINTLYVAM 877

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA   L +          +S   +W++ V     +  +        + +    +     
Sbjct: 878  TRARHCLALSCVR----ASQSAPGSWWNRVAPLAADVPQDLSGPAGGAEDGLRAVVDAQL 933

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
               P                E +   +  +             PST              
Sbjct: 934  PELPGWQDAPPLPMGPPPGAEAEAGAQAEAGAAVAGLPRERRAPSTP------------- 980

Query: 776  DNQTFNRGLIIHKLLQVI---------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                  +G  +H+LL+                            ++ +  P +  +   +
Sbjct: 981  ---ASRQGEAMHQLLEQAGLAGRLRGGAAGSSAGWPRARLLQLARDFE-LPPELAERAAV 1036

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG---RIDQISI----SQQNIF 879
               R+L+        S D         ++   +  I+  G   RID++       +   +
Sbjct: 1037 MAARILQGEGAWAWNSAD--------IELAMDEAPIVHRGQTLRIDRLVRRSTGGRGEWW 1088

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            + +YK+  +  ++ E +      Q+  Y + ++  +P + +    +   + ++  +  + 
Sbjct: 1089 VLDYKSAANPERQAELV-----EQMRRYRQAVQGQFPGEPVRAAFL-TGDGRMVEVDSSA 1142


>gi|163857120|ref|YP_001631418.1| DNA helicase II [Bordetella petrii DSM 12804]
 gi|163260848|emb|CAP43150.1| DNA helicase II [Bordetella petrii]
          Length = 752

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 103/661 (15%), Positives = 209/661 (31%), Gaps = 131/661 (19%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +   T +    K ++               +  Q      ++
Sbjct: 93  LRAHHRDAGLPQTFQILDT---TDQLAAIKRLLKANGIDDEKYPP---RDVQRFINGAKE 146

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   ++  +       +   YE   ++  V+DF +L++   +LL +    A +R  
Sbjct: 147 DGLRPGDVEAHDSHRRRLIEIYQLYEAQCQREGVVDFAELLLRAYELLSRN---APVREH 203

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   HIL+DE QDT+ +Q++ +R L               ++FAVGD+ QSIY+F GA
Sbjct: 204 YQRRFRHILVDEFQDTNTLQYKWLRLLAG----------GGASIFAVGDDDQSIYAFRGA 253

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R   +         ++I L  ++RS   IL   + +        G +    
Sbjct: 254 NVGNMADFEREYAR--------GTVIRLEQNYRSYGHILDSANALIGHNSGRLGKN---- 301

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW       +              D +         A+ +   
Sbjct: 302 -----------------LW------TEQGEGEPVRVIEQPSDGIE--------AQWLVDE 330

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           + ++I   ++           ++I VL R    + ++            I          
Sbjct: 331 VRSLINEGSLR----------REIAVLYRSNAQSRVLEHAL----FSAGIPYKVYGGLRF 376

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   IK  +A  R + + +DD S++ ++  P        + ++    R +  +++  + 
Sbjct: 377 FERQEIKHALAYLRLMANPDDDTSWMRVVNFPTRGIGARTLEQLTDAARAQDTSLFGAVA 436

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
           + A  G +      + I  + H  +     +    +L A      +   R G E ++ L+
Sbjct: 437 RVAGKGGANLAQFAQLIGRMAHDTRDLPLPELVEHMLDASGLVAHYKTEREGAERLENLN 496

Query: 531 EFLNFTLRNEQNS------------------YSSLQ-ELISELEQYPPTIKRAHSANHNE 571
           E +                               L                    A  + 
Sbjct: 497 ELITAAAVFASEENFDGLPAGRVPDLGADVPPDGLTPLAAFLAHAALEAGDNQAQAGQDA 556

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MTVH AKGLE   VF+      +F H++                             
Sbjct: 557 VQLMTVHAAKGLEFDAVFITGLEEGLFPHENSLLEP------------------------ 592

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                     +  EE  RL+YV +TRA  +L +    +     ++        + +    
Sbjct: 593 ----------AGLEEERRLMYVAITRARQRLYLSLAQSRMLHGQTRYAMRSRFLDEIPEQ 642

Query: 692 D 692
            
Sbjct: 643 H 643


>gi|119475194|ref|ZP_01615547.1| DNA helicase II [marine gamma proteobacterium HTCC2143]
 gi|119451397|gb|EAW32630.1| DNA helicase II [marine gamma proteobacterium HTCC2143]
          Length = 725

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 120/728 (16%), Positives = 230/728 (31%), Gaps = 141/728 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    +S  +             +  +   L  +S +     R
Sbjct: 30  GAGSGKTRVLVHRIAWLIQAEGLSPFSILSVTFTNKAAKEMRARIDELLGSSASGLGAPR 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE-----KLKKSQDEFIKIRDRF------ 114
             +    F        K    Q    ++  + +     +L K       + +        
Sbjct: 90  -GMWVGTFHGIAHRLLKAHWKQAGLPQNFQILDSDDQLRLVKRIHREFDLDESRWPPRQS 148

Query: 115 ------------NTYKMFKSTLAS-LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                           +         +    +   YE+A  +  V+DF +L++  ++L  
Sbjct: 149 QWFINGQKDEGKRAAHIEDYGKDLNHSTMLRVYLAYEQACDRQGVVDFAELLLRAHELWL 208

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           K+     I     +   HIL+DE QDT+ IQ+  +R L                + AVGD
Sbjct: 209 KQPA---ILQHYQERFKHILVDEFQDTNTIQYAWLRVLAG----------KNIPVVAVGD 255

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GA+ + + +  +              I+ L  ++RST+ IL   + V    
Sbjct: 256 DDQSIYGWRGAKIENIQQYSKDFPN--------TQIVRLEQNYRSTSTILNAANAVIDNN 307

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
            +  G                      +LW             +  S  + F+   +   
Sbjct: 308 TDRLGK---------------------ELW-------TDGGEGELISVYAGFNEQDE--- 336

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR I   I   +      S+            +L R    + ++            
Sbjct: 337 ----ARFIVERIEEWVKDGHDRSSS----------AILYRSNAQSRVLEEAM----IRGG 378

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           I           D L IK+ +A  R   +++DD +   ++ +P        I  I    R
Sbjct: 379 IPYRIYGGQRFYDRLEIKNALAYMRLTNNRDDDTATERVINTPTRGIGSKTIEVIRAYAR 438

Query: 461 HETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
              ++++             N   S  Q  I+ I  +       +  +    ++ A    
Sbjct: 439 EHNQSLWRAAVNIIDNKLLPNRASSALQGFIEMIDVMDKNTDDVTLEELADHVVNASGLI 498

Query: 515 Q---QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHN 570
           +   +     G   I+ L E +    + E +  + +  L   L+       ++      +
Sbjct: 499 EFHKKEKGEKGQARIENLQELVVAARQFESSDEA-ISPLQEFLDSAALDAGEQQADEFED 557

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V++MT+H+AKGLE P+VFLV     +F HK                             
Sbjct: 558 SVQLMTLHSAKGLEFPLVFLVGMEENLFPHKMS--------------------------- 590

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                    +    EE  RL YVG+TRA ++L I    +       N  +    + +   
Sbjct: 591 -------MEESGRLEEERRLCYVGITRAMEKLYITYAESRRMYGNENYNSPSRFIREIPQ 643

Query: 691 NDERVKKI 698
              +  ++
Sbjct: 644 ELMQEVRL 651


>gi|269962274|ref|ZP_06176626.1| DNA helicase II [Vibrio harveyi 1DA3]
 gi|269832977|gb|EEZ87084.1| DNA helicase II [Vibrio harveyi 1DA3]
          Length = 724

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 179/549 (32%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+      ++R        HIL+DE QDT+ I
Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +            
Sbjct: 230 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I                  
Sbjct: 311 -------TDGVVGEPISIYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R I ++
Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLIANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T++E           A          
Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWEASVAMLDEKVLAGRAAGALSRF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ +  L         H     ++        +    G +    I+ L+E +  T + E+
Sbjct: 463 IELVTALEDDTIEMPLHHQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 523 PEEAEDMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 609 QKLYITYAE 617


>gi|92117527|ref|YP_577256.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91800421|gb|ABE62796.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
          Length = 1110

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 157/927 (16%), Positives = 293/927 (31%), Gaps = 92/927 (9%)

Query: 31   INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEIN 90
            + + +++    G    +     L  A      E  F+        +  T  +    +   
Sbjct: 241  LGEIIAIFQGHGLAVPIPSNAALVAALGFHRHETCFTQDGKRRQLRASTKWQEAAAKAGR 300

Query: 91   KKS--PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
             K+      E L    D               +  L        L   +   K+   +LD
Sbjct: 301  PKAAGKMASEALVLRYDACHGAISTLIGAVSRELLLRLCNEMAQLREDWRGYKRAAALLD 360

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK- 207
            F+DL+    DLL      A +R  + +   H+L+DE QDT  +Q E++  L  D   G+ 
Sbjct: 361  FDDLLYKARDLLAND---AEVRNALSKRFRHVLVDEFQDTDPLQTEILWLLCGDDSAGEP 417

Query: 208  -NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
             +    P  LF VGD KQ+IY F GA+    +         A  A    S++++  +FRS
Sbjct: 418  LSRPLRPGALFLVGDPKQAIYRFRGADVNAYIA--------ARAAIAPGSLLKITANFRS 469

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
               IL  V+K F                    S   GQ G  +L     +  D       
Sbjct: 470  VEPILAFVNKKFEHV----------------LSESAGQPGFSELSPIHPASADPAVVAL- 512

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK--RVIQAKDILVLVRKRK 384
               T   +     +     A  +A     + G   +  +     R  +  DI +L     
Sbjct: 513  -DVTVNEEKPSAGAMRDAEALAVADLCGRLAGNMMVRDHHTNELRKCRFGDIALLAPVGT 571

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            +          L     I V             I+DL+AL   +    D L+    L+ P
Sbjct: 572  ELWRFEEALEDL----GIPVSTQAGKGFFRRQEIQDLVALTCALADPRDSLALGAFLRGP 627

Query: 445  LFNFSEDDIFKICT------QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
            +   +E ++  I         +     +            +   + I+ +  L +     
Sbjct: 628  MVGLTETELLDIAEQLPSDPDQPNQLPMLSLRTDPDQIANATASNAIRILAFLRNRGGKT 687

Query: 499  SPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
            +P+   +  + A   R Q   RF       +  +D FL      +      L+    ++ 
Sbjct: 688  TPYSLLSDAVAALHVRPQLRQRFKEGTERAVANVDLFLELARAYD---VRGLRAFARDMR 744

Query: 556  QYPPTIKRAHSANHNE----VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                   R      +     + ++TVH+AKGLE  VV  ++   +  S   +        
Sbjct: 745  ANWEETVRQVEGRPDAEEQSISLITVHSAKGLEWSVVIPLNMTGKPQSESGL-------- 796

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              D       IP   +       +       +  E  RL YV  TRA D LI+       
Sbjct: 797  AYDRSSNRFSIPVLGNDPPDYDGIKSKNVVESARERVRLWYVATTRARDLLIL-----PR 851

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
            +  K  + +W  +V     +        L  +       A   S  + +   +   E  +
Sbjct: 852  HSAKLAEDSWTRIVELGLEHLPA-----LDGAALGAPGQAPAKSGENLQTREIFAAEASR 906

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
             L D + +  +  S  + D ++   +  +      +     ++  +    RG+I+HKL++
Sbjct: 907  ILADRKAVTWRRPSRAELDPHQSGNVEAAVASEAVEIPPSVVVGSST---RGVILHKLIE 963

Query: 792  VIFTLPEHKRKNFIT----SYCTKNAKLWPAKEY-----KNLLLSITRLLENPMMTTAMS 842
             I +         +        T+                 L  ++ R L    +     
Sbjct: 964  EILSGETQDTLERLEIRAGELLTQIGSGAAQNTQAGISPAELSATVMRTLALSEIKEL-R 1022

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI--FIFEYKTHHHVP----QEIEHI 896
                +E+ V G       + +ISG  D +++ +      + ++K+               
Sbjct: 1023 HRLVAELPVFGCSITVDGETLISGLADAVALDESGAIDVVIDWKSDVAPDVAALDHYRQQ 1082

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCL 923
               +  Q++    ++      K +   
Sbjct: 1083 IGDYRKQMNAKRALVVLMTSGKVIEVA 1109


>gi|227872193|ref|ZP_03990560.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium
            sinus F0268]
 gi|227841976|gb|EEJ52239.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium
            sinus F0268]
          Length = 1283

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 160/1116 (14%), Positives = 333/1116 (29%), Gaps = 229/1116 (20%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEE 64
             + +Y D+            + + L  E   P            +   L      + +  
Sbjct: 204  EKDLYIDMKSRLENLSLLYEEALDLCREPNGPIEYEERILEERDQCLALSNTDSLEELVR 263

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
                LS   L       K ++ + + ++     +  +++     +  +     K  K  L
Sbjct: 264  GLENLSFGRLKSTKAEGKELV-KSLRERGKKTLKTWQENYRLLPEELEEEVEEKGQKRIL 322

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR--------------------- 163
              + L      HY++ K++  VLDF DL      LL K                      
Sbjct: 323  ELVRLCLLFLEHYQKEKEERAVLDFSDLEHFALKLLYKDGEDKSIEEEAEIEAEEEIGAD 382

Query: 164  -----------------------DVSAWIRYKIDQEINH-------------ILIDEVQD 187
                                   D +  I    +Q++ +             IL+DE QD
Sbjct: 383  AKIEEETKIEADAETEHEIEVGKDGAKEIARGKEQKVRYSALADELAKSYREILVDEYQD 442

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            ++L+Q  ++R+L+++             +F VGD KQSIY F  A P+  L +       
Sbjct: 443  SNLVQEYIVRALSQE-------RFGRPNVFQVGDVKQSIYRFRMARPELFLEKYHD---- 491

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQV 305
                 + +  I L  +FRS   +L+ V+ +F         G+  D   ++     R  + 
Sbjct: 492  -----ESYPKIFLRKNFRSDEGVLSAVNALFFRIMKKAFGGIEYDLENSLFLGKGRTEEA 546

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES------------------------- 340
               +       + D       E   + F     +                          
Sbjct: 547  RQEEESITGKQRRDQTELLLLELEKTAFTGEEGDEGEDSKEESNSSSNSSSDGASNSSSG 606

Query: 341  ----SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                   +  + IA  +  ++                KD+++L+R       ++     +
Sbjct: 607  KSLSKLELECKMIAAKVRELLEKG----------YAYKDMVILLRSPHG---VSREMVDI 653

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 I      +      + ++ +++    I +   D+    +L+SPLF+FS++++ +I
Sbjct: 654  FGKEGIPAYAELKTGYYSAVEVETVLSFLAIIDNPRQDIPMAAVLRSPLFSFSDEELGEI 713

Query: 457  CTQRHET-------------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
               +                    +  +        K+Q+    +     +++    H  
Sbjct: 714  VLAKGGLYEKPYDKSKENAVNLSLQAEKALTPALEEKWQNFQNKLERYRRLSRSLRLHSL 773

Query: 504  FTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
             +LI           +   G +    LD+ L    + E+ SYS L   I  +E+     +
Sbjct: 774  LSLIYEETDYYNYVRALPLGEKRQANLDQLLEDAKQFEKGSYSGLFHFIRYIEKVKKQEQ 833

Query: 563  RAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                        + +RIM++H +KGL+  VVFL              KM +   L     
Sbjct: 834  DQGEATVFSEKDDLLRIMSIHHSKGLQFKVVFLSQLHKTFNKMDSKAKMLMDAELGLAAD 893

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                  + K  +     + +  ++ +  E  R+LYV MTRA ++LI+        +    
Sbjct: 894  YLDLETRIKYPSLHKIAIKEKGERESLGEELRVLYVAMTRAEEKLILTAVCKNEEDLIKK 953

Query: 678  QR--------------------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
                                        ++++           + K  L  +  K    A
Sbjct: 954  FPVQDRLSLEDIRGATSYLAWICMAYSKSFFESTKTGEIALRFLSKEDLEENEGKAMGEA 1013

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
                    E    ERE+T  + + E+        P +   +     + S +  K      
Sbjct: 1014 ISLEKKLYEFLGKEREKTEAEKLMEEHFS--YVYPYEKSTHRSPKYSVSLLKMKAMEEHG 1071

Query: 772  SLLSDNQTFNR---GLIIHKLLQVIFTLPEHKRK-------------------------N 803
              L +         G  +    +      E +++                         +
Sbjct: 1072 EKLGEQLGTEIEQEGRAV--APEWDEGKAEARQQAKDKSDSPLIRKMKAEGKNIGAAIGD 1129

Query: 804  FITSYCTKNAKLWPAKEYKNLL----------LSITRLLENPMMT----TAMSCDSYSEV 849
                            +  + L            + + L++P+             Y E 
Sbjct: 1130 SYHHALAFYDYFKDISQLSDFLSPEEYGLLNQEKLQKFLDSPLGQLFAKAYKENTLYREQ 1189

Query: 850  SVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
                ++              + +I+ G ID   + ++ I + +YKT     ++   +   
Sbjct: 1190 HFMQEVEYEKLFPEDGGDTVEKVILQGIIDAFIMEEEGIILVDYKTDRV--KDGAELRNR 1247

Query: 900  HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            +  Q+ +Y + L+     K    +L   S  +   +
Sbjct: 1248 YQKQIDLYSEALEQILGKKVKRRVLYSFSLGEEVDL 1283


>gi|189346089|ref|YP_001942618.1| UvrD/REP helicase [Chlorobium limicola DSM 245]
 gi|189340236|gb|ACD89639.1| UvrD/REP helicase [Chlorobium limicola DSM 245]
          Length = 741

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 107/628 (17%), Positives = 209/628 (33%), Gaps = 121/628 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y    ++N  LDF+DL+I   +L +  +    +  ++ +   +ILIDE QDT+
Sbjct: 170 AAKVYELYTRKLRENNALDFDDLLIKPLELFRAHEA---VLGELQETFRYILIDEYQDTN 226

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+   + L           +  R +F VGD+ QSIYS+ GA+   +L  +   Q    
Sbjct: 227 RAQYLAAKML----------GAKHRNIFVVGDDAQSIYSWRGADITNILNFQDDYQ---- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                    +L  ++RST  IL   + V             S                  
Sbjct: 273 ----DSQTFKLVENYRSTGTILQAANSVIRNNHRQIKKDLIS------------------ 310

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                     ++   +  +    ++   +         ++   I +M   D         
Sbjct: 311 ----------NRSAGEPVTLIEAYNERQEG-------EKVVEHIRSMRQKD--------- 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                   V  R    + ++  + R      +I               IKD +A  RFI+
Sbjct: 345 GHDYSGFAVFYRTNAQSRVLEDVMR----QNRIPYRIFGSVSFYKRKEIKDAVAYLRFIV 400

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA-----NCGISKFQH 483
           ++ D+ S + ++  P     +  I K+      +  ++Y+ I+  A        ++  + 
Sbjct: 401 NERDNESLLRIINFPPRKIGDVSIAKLKEYAVLQDVSLYDAIRNAAEGGFQQRLVNALES 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               I +L  ++++ S +D  + +        Q  +    E     D L E L+      
Sbjct: 461 FSSVIEQLRELSEYGSVYDVLSELYSLTAIPAQLQAENTAESLARYDNLQELLSMARDFS 520

Query: 541 QNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++  S   L   LE          +  + N V +MTVH +KGLE PVVF+     ++F 
Sbjct: 521 DHNPDS-SSLGDFLENISLASDYDETRESDNYVSLMTVHASKGLEFPVVFITGMEERLFP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                               +   ++   EE  RL YV MTRA 
Sbjct: 580 ------------------------------------LSTYEQDELEEERRLFYVAMTRAQ 603

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +++ +          +         +   F  +     ++  +        + E ++   
Sbjct: 604 EKIFLSWAR-----SRYQYGQPQQCLRSMFVTEIDASIVRTESGELLSVRGSSERASSAG 658

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPI 747
            +     +  +    +  + P++   P 
Sbjct: 659 SSPARGVQPRVPSPQNGIQAPRQESKPA 686


>gi|330998558|ref|ZP_08322378.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329568156|gb|EGG49975.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 819

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 103/663 (15%), Positives = 201/663 (30%), Gaps = 121/663 (18%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             +     N  +M     A + +   +   Y    ++  V+DF+DL++ T  LLK+    
Sbjct: 158 LPEAYLSDNAVRMADQ-AAKIPMTGEIYLRYMSRLRQADVMDFDDLLLYTYILLKEHPE- 215

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +  +   + + +L+DE QDT+  Q  ++  LT+            + +  VGD+ QSI
Sbjct: 216 --VCGRYADKFDFVLVDEYQDTNYAQHCIVWELTQ----------KKQQVCVVGDDAQSI 263

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YSF GA    +L   +              + +L  ++RST  I++  + + S  +    
Sbjct: 264 YSFRGANIDNILNFTQKYNN--------AKLFKLEQNYRSTKTIVSAANSLISHNDRQIP 315

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               S                           D +       +++Y D           A
Sbjct: 316 KDVFS---------------------------DKEKGSPLHVYSAYSDIEE--------A 340

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +   I+ +   + +  +G           +L R    +       R       +    
Sbjct: 341 EIVVNQIAALRRKEKMEYDG---------FAILYRTNAQSRTFEEALR----KRGMPYRI 387

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465
                      IKD++A  R  ++  D+ +F  ++  P     +  + KI +    +  +
Sbjct: 388 YGGLSFYQRKEIKDVIAYCRLAVNPHDEEAFKRVINYPARGIGQTTVDKIVSVASTDGVS 447

Query: 466 VYEYIQKFANCGIS-------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
           ++E + +     +        K +     I   I   +          I+      ++  
Sbjct: 448 LWEVVSRPEEHSLPVNKGTMGKLKSFTDIISGFIEETEQMDAVFLTQEIIRESGIMREIF 507

Query: 519 SRFGNE---VIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                E     + + E LN          E+   + L + + E+       +      H 
Sbjct: 508 QDMSPEGMSRQENVQELLNGVQEFVSRRLEEGQSTGLSDFLQEVSLLSDLDEDESDEQH- 566

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +MT+H+AKGLE PVVF+V     +F                                
Sbjct: 567 KVTLMTIHSAKGLEFPVVFIVGMEENLFPSPMAGNS------------------------ 602

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                     +   EE  RL YV +TRA     +    +     K+        ++D   
Sbjct: 603 ----------QRALEEERRLFYVAITRAERYCYLSFARSRYRFGKTEFSNPSRFLHDIDP 652

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               +      +                   + L     + +  DE              
Sbjct: 653 RYVEMDAQDGFSFGQTRRRKFASERAQTELRSSLPSVSKLCKYEDEDDYGTSYRERHHRA 712

Query: 751 INE 753
             E
Sbjct: 713 YGE 715


>gi|314982168|gb|EFT26261.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA3]
 gi|315090399|gb|EFT62375.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA4]
          Length = 810

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 99/633 (15%), Positives = 194/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A Y+   +    LDF+DLI+ T  +L++      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYAEYQRRLRAANALDFDDLIMYTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  + + I + +      +  + IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDDHIAMVEQGKRADEIASSILKESGYITELENSKDPQDETRLENLIELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLESSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +      
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPERLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|241759542|ref|ZP_04757645.1| DNA helicase II [Neisseria flavescens SK114]
 gi|241320099|gb|EER56460.1| DNA helicase II [Neisseria flavescens SK114]
          Length = 735

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 100/582 (17%), Positives = 192/582 (32%), Gaps = 118/582 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++  ++  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +  +             +FAVG
Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGANVGNMTALMNEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A+ I      +                  +I VL R    + +I           
Sbjct: 333 -----AQFIVDETKALERDGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IK  +A  R  ++ +DD + + ++  P        I  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTIENLQTAS 433

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            E           A    +K    ++ I  L +        +    IL      + + ++
Sbjct: 434 SEQGITLWQAACNAGAKAAKVAAFVRLIEALRNQVGQMPLPEIIVGILKDSGLTEHYETQ 493

Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566
            G   + +D LDE +N  +    E +++ +L E         +++ L        +    
Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQAG 553

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A    +++MTVH AKGLE   VFL       F  +                         
Sbjct: 554 AGEKAIQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                        ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|225023085|ref|ZP_03712277.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944308|gb|EEG25517.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 894

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 114/737 (15%), Positives = 214/737 (29%), Gaps = 152/737 (20%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKSTL-ASLTLAKY 132
                   +I +++   +     +L  +       ++ D         +T          
Sbjct: 207 DDSKRLLGMIAKDLQINAQKFPPRLLAAAISALKTELTDPDAASDEAAATRNPFDRTIAE 266

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+   +    LDF+DLI  T  +         I     +   H+LIDE QDT+  Q
Sbjct: 267 VYTEYQRRLRAANALDFDDLIGETVRVFTTHPE---IAAYYRKRFRHVLIDEYQDTNHAQ 323

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +I +L           S    L  VGD  QSIY+F GA  + +   +R   +      
Sbjct: 324 YVLISTLV-------GIGSDASELSVVGDSDQSIYAFRGATIRNIEEFERDYPQ------ 370

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL+  + V S     +                        LW 
Sbjct: 371 --ARTILLEQNYRSTQNILSAANAVISHNHGRREKK---------------------LW- 406

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                        + +     +   +       AR IA  I  +  T           + 
Sbjct: 407 ------TDHGAGAKITGYVADNEHDE-------ARFIATEIDALFDTG----------VG 443

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             DI V+ R    +  I  +         I           +   I+DL+A  R + +  
Sbjct: 444 YGDIAVMYRTNNSSRAIEEVF----IRTGIPYKVVGGTRFYERKEIRDLIAYLRVLDNPT 499

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKF--------QH 483
           D++S   ++ +P     +  I  +     +   +  + +   A+  ++            
Sbjct: 500 DEISLRRIINTPRRGIGDRAIATVNLYAENFGMSFADALVDAAHGKVTALGTRAKNAIAA 559

Query: 484 VIKYIHELIHIAQFCS--------PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
            ++ +  L   A   +             + IL A   + +  +    +    +D L+E 
Sbjct: 560 FLELMDGLRADAAEATNAITGLPDIGVVVSRILDATGYKAELEASTDPQDGARLDNLNEL 619

Query: 533 LNFTLRNEQN---------------------------SYSSLQELISELEQYPPTIKRAH 565
           ++                                      S+   + ++     + +   
Sbjct: 620 VSVAREFSSEAANLMAYAAMGAGVEGNDPAEPMVGEPQPGSIHAFLEKVSLVADSDQLPD 679

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            +  N V +MT+HTAKGLE PVVFL+      F H                         
Sbjct: 680 DS-TNVVTLMTLHTAKGLEFPVVFLIGWEDGQFPH------------------------- 713

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                    L          E  RL YVG+TRA + L + +    ++   +        +
Sbjct: 714 ---------LRALGDPQELAEERRLAYVGITRARETLYLTRAMLRASWGNAVANPASRFL 764

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
            D        ++ +       D+W A  W                       +     + 
Sbjct: 765 EDIPEKLMYWRREEPGAGGWDDDWGASGWGGGSFVAGYGGYGGYGGSGGYSGRKSGGSYR 824

Query: 746 PIKNDINEPYILNPSTI 762
             K   +       + +
Sbjct: 825 KPKTPRSSRSSTPAANL 841


>gi|72160928|ref|YP_288585.1| DNA helicase [Thermobifida fusca YX]
 gi|71914660|gb|AAZ54562.1| putative DNA helicase [Thermobifida fusca YX]
          Length = 1108

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 140/968 (14%), Positives = 270/968 (27%), Gaps = 169/968 (17%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            D++      ++   +++      +   +          L   + + K +  V+D+ D + 
Sbjct: 184  DVRAYGDWLRERAAQLKKTPALVRDLLAVQRHREQLLPLLEQFAQLKAEREVMDYSDQVA 243

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
                + ++      I     +    +L+DE QDTS  Q  +++SL  +            
Sbjct: 244  LAARIAQRHPEVGRI---ERERYAVVLLDEYQDTSHAQLVLLQSLFGN----------GH 290

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             + AVGD  QSIY + GA    + R      ++     +   + +L  SFR+   IL V 
Sbjct: 291  PVTAVGDPCQSIYGWRGASAGNLSRFPVDFPEK---PDRPAPVRQLSTSFRNGERILEVA 347

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             ++      A          + +        G V          +++   +Q       D
Sbjct: 348  KRIAEPLRAA-----ARDVPVLYPGPARAGRGRVTCALLRTETEEAEWIAEQI------D 396

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
               +ES+    A                     +  +   DI VL RKR   P    + R
Sbjct: 397  RALRESAEHHTAP----------DGLPWPEQEHRGPLSYGDIAVLCRKRAQFP----VIR 442

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                +  I V       L +   ++D++A  R +           +L  P +     D+ 
Sbjct: 443  RALEERGIPVEVVGLGGLIEVPEVRDIVATLRVLHDPTAANELARILTGPRWRLGPRDLV 502

Query: 455  KICTQRHETETVYEY----------------------------------------IQKFA 474
             +  +  E                                                ++++
Sbjct: 503  ALNQRAKELAEEARRDLRGEAAEARVDEEDPLRQTVLDLTAEAGSLLDALDDLGPPERYS 562

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDF--FTLILGAKKGRQQFISRFGNEVIDVLDEF 532
              G  + Q + + +  L        P        +LG          R  +     LD F
Sbjct: 563  ATGYQRLQALSEELRTLRTRISQPLPDLIMEVERVLGLDIEVGARPGRDQSAARADLDAF 622

Query: 533  LNFTLRNE-QNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPV 587
            ++  +R        +L   ++ L     T           + N V++MTVH AKGL+ P+
Sbjct: 623  VDAAVRFSGSTDTPTLSAFLAYLTSAEDTEHGLEPGERVGSSNTVKLMTVHAAKGLQWPM 682

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN-----IVSDLIKHLKKS 642
            V +       F                 P        S           +       +  
Sbjct: 683  VVIPGLSRGQFPGVPKTVKGWTGKAASLPFALRGDRDSLPELADVTVQEIKQFTAAERAR 742

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
               E  RL YV +TRA+  L+   H      ++S   + +             +    T+
Sbjct: 743  ELMEQRRLAYVAVTRAAFSLVCTGHWWGQETQRSRGPSEFLEEIREVCETGVGQVALWTD 802

Query: 703  SINKDEWIAYEWSTHHPENTP----------------------------------LEREE 728
              ++ E      + +     P                                  L R  
Sbjct: 803  PPDEGEPNPQLVADNSVVWPPQTDERRDAAERAAALVARYRNGEWERELALMNRALLRPA 862

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--------- 779
              +++ D  +  + L      +   P ++     D    + L SL  D            
Sbjct: 863  ANRRIRDWARDVELLLRHRDQEEGAPRVIEVELPDHLTVSALVSLARDPAALAQQIRRPL 922

Query: 780  -------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                     RG   H  L+                   +   + P +       + T   
Sbjct: 923  PRPPAPHARRGTAFHTWLE---------------RRFGQETLIDPHELPGAADETATGDA 967

Query: 833  ENPMMTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS--QQNIFIFEYKTHH 887
            +   +        ++    + V         D ++ GR+D +          + ++KT  
Sbjct: 968  DLDELQRQFEQSVWADRVPLEVEVPFETIIGDRLVRGRMDAVFHDPEDDVYEVVDWKTGR 1027

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNK-AF 944
                E E        QL+ Y          P + +     YV        P++ L+    
Sbjct: 1028 LPATERERRAAA--VQLAAYRVAWARIADIPLERVRAAFHYVRANVTV-YPEDLLDADGL 1084

Query: 945  AEISTKIP 952
            A +   +P
Sbjct: 1085 AALIAAVP 1092


>gi|229495094|ref|ZP_04388840.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121]
 gi|229318025|gb|EEN83900.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121]
          Length = 830

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 111/742 (14%), Positives = 216/742 (29%), Gaps = 152/742 (20%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF--L 74
            + + P     ++  NK  +   E     +  +A  +  ++            ++    L
Sbjct: 74  ERGVTPGQILAITFTNKAAAEMRERVAALVGPRANAMWVSTFHSSCVRILRAQAALLPGL 133

Query: 75  TQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKIR----------DRFNTYKMFKST 123
              F+   +  ++ +    S DL+   K+     +                      +  
Sbjct: 134 NSNFSIYDSDDSRRLLTMISKDLELDTKRFSARLLATHISNLKNELVGPEEAVVAADQDP 193

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   +  HY++  +    LDF+DLI  T  LL+       I     +   H+L+D
Sbjct: 194 AELPRLIAKVYGHYQQRLRAANALDFDDLIGETVALLQ---AFPQIAEYYRRRFRHVLVD 250

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q+ ++R L        +   +P  L  VGD  QSIY+F GA  + +   +R 
Sbjct: 251 EYQDTNHAQYMLVRELVGGAGE-SDHAVAPAELCVVGDADQSIYAFRGATIRNIEEFERD 309

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         I L  ++RST +IL+  + V S     +                  
Sbjct: 310 YP--------DARTILLEQNYRSTQNILSAANSVISKNTGRREKR--------------- 346

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 LW             +        +   +       A  +A  I  ++      
Sbjct: 347 ------LW-------TDSGEGELIVGYVADNEHDE-------ASFVASEIDRLVDQGET- 385

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +  DI V  R    +  +  +         +           +   ++D++A
Sbjct: 386 --------KFADIAVFYRTNNSSRALEEIF----IRLGVPYKVVGGVRFYERKEVRDIVA 433

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK---------FA 474
             R + +++D +S   +L +P     +     +          +    +           
Sbjct: 434 YLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEHRNISFAAALRDGAEGKVALLN 493

Query: 475 NCGISKFQHVIKYIHELIHI-----AQFCSPHDF------FTLILGAKKGRQQFISRFGN 523
                     ++ +  L  +     A    P +          +L     R +  +    
Sbjct: 494 TRSQKAIASFLEMMDGLRALLPTAAADEDEPFELGDIGEVAEAVLERTGYRAELAASSDP 553

Query: 524 E---VIDVLDEFLNFTLRNE--------------------QNSYSSLQELISELEQYPPT 560
           +    +D L+E ++                          +        L + LE+    
Sbjct: 554 QDGARLDNLNELVSVAREFSSDARNAAGLIDPDDEETAAMREGEPDPGSLAAFLERVSLV 613

Query: 561 IKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                   ++   V +MT+HTAKGLE PVVF+       F H                  
Sbjct: 614 ADADQLPDSDDGVVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDP----------- 662

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                  +   E  RL YVG+TRA  +L + +    S   +  Q
Sbjct: 663 -----------------------AELSEERRLAYVGITRARQRLYLTRAIMRSAWGQPIQ 699

Query: 679 RTWYDMVYDSFHNDERVKKIKL 700
                 + +   +    ++   
Sbjct: 700 NPASRFIQEIPEDLINWRREDP 721


>gi|149910376|ref|ZP_01899018.1| putative exodeoxyribonuclease V [Moritella sp. PE36]
 gi|149806524|gb|EDM66493.1| putative exodeoxyribonuclease V [Moritella sp. PE36]
          Length = 1190

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 133/992 (13%), Positives = 305/992 (30%), Gaps = 129/992 (13%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L++  G   N   E I K            +   + L  +          + +Q  +   
Sbjct: 200  LRDISGYLSNTDIEFIAKTGSNDIEQDYDKLISSIQLVKDAWFKNASDLCELIQAGNLNG 259

Query: 61   CIEE--RFSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
                    +   +  L      T++     +I+    +  +   K+  +  +       +
Sbjct: 260  NSYRVASVAKWLNEMLSWSQSETKQNDLPDSIVKFAQHALTAKTKKGKQSPEHPVFSDIE 319

Query: 113  RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                  +       +   +Y+     + K ++ +L F+DL+   +  L   + +  +   
Sbjct: 320  TLLEQPLSLKDCFIVKAVEYVRVRVMKTKNQSQLLSFDDLLSGLSAALVG-EQAESLAEC 378

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            I  +    +IDE QDT   Q+++  ++          +     LF +GD KQ+IYSF GA
Sbjct: 379  IRSQYPVAMIDEFQDTDQQQYDIFNTIYG--------NQDGAGLFMIGDPKQAIYSFRGA 430

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +    ++ +       T          L  ++RS+  +++ V++VF              
Sbjct: 431  DIFTYMQARENVDDHYT----------LAKNWRSSTAMVSAVNRVFEHA----NKPFIYE 476

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             +I  +           L   V          ++E   +    L Q+  A   A +IA  
Sbjct: 477  DSISFQPVESQGKSKPLLLNGVEPAALQLWLHEEEGQKNITKGLYQQVYAKATANQIATL 536

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +       +    R ++A DI +LVR   +  L+      L      SV  ++R  +
Sbjct: 537  ---LTDAQQGNAMLSGRAVKAGDIAILVRTGAEARLVRDQLDALSIP---SVYMSNRESV 590

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  ++L  +   IL+ ED+      L + +F     ++ ++       E      ++
Sbjct: 591  FATREARELYHIFAAILNPEDEGLLRAALATSIFEKPAIELDQLSNDEKVWEQTVAEFKQ 650

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            +      ++Q  +  +  L++            ++L  + G ++            L E 
Sbjct: 651  Y--QNTLQWQGFLPALRLLLNQQN------IAAIMLSGQGGDRRLTDVL------HLGEL 696

Query: 533  LNFTLRNEQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            L          YS  +    ++E              +  + V+++T+H +KGLE  +VF
Sbjct: 697  LQEASLELDGEYSLFRWFGEKIENPNSDAQEQLVRLESEADLVQVVTIHKSKGLEYNLVF 756

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L    +   +   +        ++ D                +    +   +    E  R
Sbjct: 757  LPFICATRQASTPLYHQDGHTYVHLDL----------DDEEALESAKEQADQERLAEDLR 806

Query: 650  LLYVGMTRASD--QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK- 706
            LLYV +TR      L +      ++  K +      ++       +   K  +     + 
Sbjct: 807  LLYVALTRGVYATWLGLGAVKMGNSHNKMHLNAMGYLLQQGEECKDTEFKACVEKLAEQQ 866

Query: 707  ---DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
               D       +    +           + M          +         +    S+ D
Sbjct: 867  TCVDVVSPPLAAVDAYQPIVAPPVVYQARTMTNPISKNWWVTSYSALSRHSHGNRHSSYD 926

Query: 764  TKGKTNLESLL----------------SDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFI 805
               +                       S  +    G ++H + + I    + E      I
Sbjct: 927  ASLELPGFDAEVDTEKEDEHEASWDIFSFPRGAAAGTLLHTVFEHIDFANVDEDMLTEQI 986

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCDSYSEVSV--------- 851
                 +    +       LL  + ++L+ P+     +          E+           
Sbjct: 987  LQLLEREG--YDLAWLPVLLKLVNQVLDCPLQDGFSLRQLTPTQKKVEMEFFMPISSLNC 1044

Query: 852  ----------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE- 894
                            +G+++  +   ++ G ID + + +   ++ +YK++H    + + 
Sbjct: 1045 DDLNTLIKQHDDLSQQAGELDFQQVSGMLKGFIDLVFVYEGRYYVLDYKSNHLGDSQADY 1104

Query: 895  --------HIPYTHIAQLSIYEKILKDSYPNK 918
                     + + +  Q  +Y   L     ++
Sbjct: 1105 TCDAINQVMVEHRYELQYQLYTLALHRFLRSR 1136


>gi|324114889|gb|EGC08855.1| exodeoxyribonuclease V [Escherichia fergusonii B253]
          Length = 1183

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 126/878 (14%), Positives = 266/878 (30%), Gaps = 129/878 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +       D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFDAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDAALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +                L  +GD K
Sbjct: 365  ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HQQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++      G    V          + +  P  + W    +        S
Sbjct: 467  AFMFREIPFVPVKSAGKNRGLHFAV----------NGEKQPAMKMWLMDGEYCSVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  TMAQVCAMQIRDWLQAGQRGDALLMNGDTSRPVRASDISVLVRSRQEASLIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  + T
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMTPEREDTLRSALATSMMGLNALDIENLNT 633

Query: 459  QRHETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                 ET ++ + +  +     ++   V+  +  L       S  +    +L    G ++
Sbjct: 634  ----NETAWDAVVEEFDGYRQLWRKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQQAGTQLESEHALVRWLSQHILEPDSNAASQQMRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L    +     +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------QSFEAMLDLSEAK 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            + ++  +     E  RLLYV +TR+     L +        +KK         +      
Sbjct: 785  ESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGPTDVHQSALGRLLQK 844

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPEN------TPLEREETIKQLMDEQKIPKKLFS 745
             E      L   I           T    +           EE   + +          +
Sbjct: 845  GEPQDAAGLRACIESLCDDDITCQTPPRPDNIRWHMVESASEELSARNLQRSPGDNWRVT 904

Query: 746  PIK------------NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                                      + +  K +    +     +  + G  +H L + +
Sbjct: 905  SYSGLQQRGHGIAQDLLPRLDIDAAGTAVSEKSEEPQLTPHQFPRGASPGTFLHSLFETL 964

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVS 850
                                + W        + +I R   N     ++     D   E+ 
Sbjct: 965  DFSQPVDSAWVREKLELDGFETWWEPVLTEWIDAILRAPLNETGISLSQLTERDKQVEME 1024

Query: 851  VSG--------------------------KINCPKKDIIISGRIDQISISQQNIFIFEYK 884
                                          ++  +   ++ G ID +   Q   ++ +YK
Sbjct: 1025 FYLPITKPLIASQLDTLIRQFDSLSAGCPPLDFLQVRGMLKGFIDLVFRHQGRYYLLDYK 1084

Query: 885  THHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
            ++        +             +  Q  +Y   L  
Sbjct: 1085 SNWLGEDSSAYTQQAMAAAMQEHRYDLQYQLYTLALHR 1122


>gi|319778234|ref|YP_004129147.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis
           MCE9]
 gi|317108258|gb|ADU91004.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis
           MCE9]
          Length = 735

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 112/630 (17%), Positives = 204/630 (32%), Gaps = 127/630 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   +   F +L               +  + +K  P     ++  Q      ++
Sbjct: 97  LRAHHKEVGLPAAFQILDMADQKSMLKRILKSMKLDDDKLYP-----IRDVQYGINNKKE 151

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                +    T         +   YE+  +K  V+DF +L++ T +LL+       IR  
Sbjct: 152 SGLRAEQVIPTYEFDETYVEIYKTYEKQCQKEGVVDFAELLLRTVELLENN---KTIRGH 208

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            +    HILIDE QDT+ +Q++ +  L                +FAVGD+ QSIYSF GA
Sbjct: 209 YNLRFKHILIDEFQDTNFLQYKWLNLLAGPSTS----------IFAVGDDDQSIYSFRGA 258

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             + +   +R   K         +++ L  ++RS   IL   +++ +   N  G +    
Sbjct: 259 NVEHMRNFERKYAKE--------NLVRLEQNYRSYNHILCAANELIANNTNRLGKN---- 306

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW         +   +Q S  S +D   +       A+ I   
Sbjct: 307 -----------------LW-------SDKGQGEQISIASLYDQNEE-------AQWILEE 335

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
              +I                + I +L R    +  I            +  V       
Sbjct: 336 TKQLIREG----------FDHRQIAILYRSNAQSRAIEHSF----ARAGVKYVVYGGLRF 381

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IK ++A  + I +   D +F+ ++  P  +     I K+    +    ++     
Sbjct: 382 YERQEIKHVVAYLQLIHNLNSDNAFLRVVNFPARSIGNRTIEKLDEIAKSVGCSLALAAG 441

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLD 530
                   K    I  I  L  +A   +  +    ++      + + +   G E ++ L 
Sbjct: 442 GLNGEAAKKVNGFIYLIKRLQEVAAESTLPELVEAVIEQTGIDEYYNNEQDGEERLENLS 501

Query: 531 EFLNFTLRN---------------EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRI 574
           E ++                    E     ++  L   L           S  + + V++
Sbjct: 502 ELIDAAKVFCKEEGIAFLKSIEVIEGVDAKNMTPLALFLSTASLEAGDNQSKRNLDAVQL 561

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MTVH++KGLE   VF+      +F H +                                
Sbjct: 562 MTVHSSKGLEFDAVFIAGLEQGLFPHDNSISEPGG------------------------- 596

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                     EE  RL+YV MTRA  +L +
Sbjct: 597 ---------LEEERRLMYVAMTRARKRLYL 617


>gi|17986879|ref|NP_539513.1| DNA helicase II [Brucella melitensis bv. 1 str. 16M]
 gi|17982519|gb|AAL51777.1| DNA helicase ii [Brucella melitensis bv. 1 str. 16M]
          Length = 827

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 181 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 237

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 238 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 297

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 298 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 349

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 350 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 380

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 381 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 422

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 423 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 482

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 483 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 542

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 543 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 594

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 595 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 625

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 626 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 668

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 669 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 728

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 729 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 762


>gi|296118828|ref|ZP_06837404.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306]
 gi|295968317|gb|EFG81566.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306]
          Length = 1087

 Score =  284 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 129/915 (14%), Positives = 255/915 (27%), Gaps = 158/915 (17%)

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L    +  + +  V+ F + +     +   +     I+    Q    +++DE QDTS  
Sbjct: 235  ELVEELQRQQHELGVVSFGEQMTFAARVASAQPGIGAIQ---RQRYRVVMLDEYQDTSHS 291

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q  ++RSL         T     ++ AVGD  Q+IY + GA  + +    R         
Sbjct: 292  QRVLLRSLFG------GTPHPELSVTAVGDPMQAIYGWRGATTENLNAFIRDFP---LED 342

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   +L +S+R+ + +L + + V                              V   
Sbjct: 343  DTPAPQDQLTVSWRNPSRVLELANVVADDI------------------FAGAHPRPVDRL 384

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   +                   +             I        I   G+    
Sbjct: 385  SARPGADEGDVQ---------LGYFETQEQEREFVALHMKKIYEQSQQVEIDDTGRATKK 435

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                  +LVR  +    I    +     + +         L     I+D++A+   ++  
Sbjct: 436  SLS-AAILVRTNRHAAEIGRHLQA----HGVPYEIVGLGGLLWEPEIQDMVAIATMLVRP 490

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI--------------------- 470
            +D  + + +L  PL      DI  +  +        E                       
Sbjct: 491  QDSAAALRILAGPLCGLGMTDINALHKRVENMTGAAEERIVYSPGDDPLDHLRAQLQQQV 550

Query: 471  ------------------------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                                    +++ + G  + + +   +  L   +   S  D F  
Sbjct: 551  DNATTKRPEQILGLADAVADMGEAERYTDEGRERIEKLASKLRHLRGYSLGKSLSDLFAD 610

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAH 565
            I      R + ++R        LD+F +     + ++   L + +    E          
Sbjct: 611  IETTFNLRTEVLARDSVGGATHLDKFADIVASYQGDTVGGLLDYLDLAREHENGLDPGEV 670

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ- 624
             A  + V ++TVH +KGLE   V ++   S  +  K    +  +  + D+  +    PQ 
Sbjct: 671  PAVDDRVLVLTVHKSKGLEWEHVCVLHADSTTYGAKANSFITKVEQVPDEDDVIEPEPQY 730

Query: 625  ----------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS----NT 670
                                L +  K    EE  RL YV MTR    L +          
Sbjct: 731  DKNGEPKPITRTDYGKAAKALEQQYKADNAEESARLFYVAMTRTEKSLTVTGGGTNSFKP 790

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             +  K     + +M+ + F +      +      +              E TP       
Sbjct: 791  GHGSKKGPYLYLEMLAEKFPDLVVEWTVPDEEPEDATGQGLESGVFPFLEPTPAAVRGAK 850

Query: 731  KQLMDEQKIPK---------------------KLFSPIKNDINEPYILNPSTI------- 762
                    +P+                     +  +    ++  P  L  S +       
Sbjct: 851  LVEAARADLPEAQSGEEFGLWESDATALIEEHRALTTPVLEVPMPSELTASDVVNLATDP 910

Query: 763  -DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
             +   +         N    RG   H  L+        +R                    
Sbjct: 911  DEFARRRRRPVPFKPNSYAKRGTAFHSWLE--------ERFGMEALLEEDELPGTGEVPV 962

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFI 880
             ++     + LE+          + S  +V           I++GR+D +        F+
Sbjct: 963  ADVEALKEKFLESEW-------ANRSPYAVETPFRFNSGGQILNGRMDAVFKEPDGSWFV 1015

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN-KSLVCLLIYVSEPKVFI---IP 936
             ++KT                 QL+IY +  +    + + +     YVS+   F    +P
Sbjct: 1016 VDWKTGRPPQGRDMEHA---ALQLAIYREGWRRIIADGQPIRAGFHYVSDNFTFEPRNLP 1072

Query: 937  Q-NKLNKAFAEISTK 950
               +L +  + ++TK
Sbjct: 1073 DGEELARLLSTVTTK 1087


>gi|314979801|gb|EFT23895.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA2]
 gi|315090029|gb|EFT62005.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA1]
          Length = 810

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +    LDF+DLI+ T  +L++      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  + + I +        +    IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMGDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +   +  
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|295098966|emb|CBK88055.1| Superfamily I DNA and RNA helicases [Eubacterium cylindroides
           T2-87]
          Length = 564

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 107/573 (18%), Positives = 189/573 (32%), Gaps = 116/573 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YE+A+ +   +DF+DL+I  + LL        +R K    +++I +DE QD  
Sbjct: 14  LANIYKFYEDARLEMKAMDFDDLLIEAHKLLNHN---VDVRTKWQNRLDYIHVDEFQDVD 70

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+ +IR +T               L  VGD  Q+IY++ GA    +LR  +  +    
Sbjct: 71  PVQYGIIRLITG----------KHAFLCVVGDPDQTIYTWRGASVDIILRFNKDFEN--- 117

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   + L  ++RST  IL   +KV S  ++                      G  +
Sbjct: 118 -----CETVILDQNYRSTKPILEASNKVISYNQDRIKKDL-----------YTQIPGDDK 161

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +     S+   +                           +A  IS               
Sbjct: 162 ILLHASSEEGDEPL------------------------FVAREISKRHKNG--------- 188

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  KDI +L R    +     + R +     I  +        +   IKD +A  +   
Sbjct: 189 -IDYKDIAILYRSNYSSRSFERVFRTV----GIPYIIYGGIRFYERQEIKDALAYLKLCT 243

Query: 430 SQED--------DLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ---KFANCG 477
             ++        DL+ + ++  P     +  I  +          ++E ++     +N  
Sbjct: 244 YPDENDPEQFSLDLAILRVINQPRRGIGQKSIDALREEAASRHINLFEEMRDPLDISNAI 303

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             K +  +  I +L    +  S  DF   +L      +        E I+ L E  +   
Sbjct: 304 KRKCEGFVSLILDLRSHRKDYSLEDFLDYVLDKTGYLKMLEDENETERIENLKELKSDIA 363

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           ++ +        L + L+       +      N V +MTVH AKGLE   VFLV+    +
Sbjct: 364 QSLKEDPD--MTLETYLQDVSLFTDKTSDLALNSVSLMTVHAAKGLEFDTVFLVNFNDGI 421

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                      +   + + EE  RL YV MTR
Sbjct: 422 FPSARSV--------------------------------QEGGRKSLEEERRLCYVAMTR 449

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           A   LII  ++  S    + + +   ++     
Sbjct: 450 AKRNLIITWNTGYSYMLDTYKTSSRFLMEIPKE 482


>gi|160947380|ref|ZP_02094547.1| hypothetical protein PEPMIC_01314 [Parvimonas micra ATCC 33270]
 gi|158446514|gb|EDP23509.1| hypothetical protein PEPMIC_01314 [Parvimonas micra ATCC 33270]
          Length = 750

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 126/697 (18%), Positives = 239/697 (34%), Gaps = 139/697 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  K  + +    VS+               + ++ + + +   +      
Sbjct: 27  GAGSGKTKVLTTKIAYAVLEKNVSEYEILAITFTNKAGKEMKERIENIFKRDISSMWIGT 86

Query: 66  FSLLSSFFLTQKFTP-------------QKNIITQEINKKSPDLKEKLKKSQDEFIKIR- 111
           F  + S  L                    + ++ +EI K++   +  L + ++  I I  
Sbjct: 87  FHSICSKILRFNIEKIGYSNNFTIYDRDDQKLVLKEIFKQNLTWESVLGEFKNAIIGIIS 146

Query: 112 -DRFNTYKMFKSTLASL-----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
             +    K  + +          + + +   YEE   KN  LDF+DLI  T +L KK   
Sbjct: 147 DAKGKNVKSSEFSKYFSFGNNTDVVEKIYKKYEEILIKNNALDFDDLIFKTIELFKK--- 203

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +     ++  +I +DE QDT+  Q+E+I+ L   +          + + AVGD  QS
Sbjct: 204 CPEVLDYYSEKFKYIYVDEYQDTNDAQYEIIKLLASKY----------KNVCAVGDIDQS 253

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY + GA    +L  +               II L  ++RST  IL   +++     N +
Sbjct: 254 IYGWRGANISNILNFENDFPNS--------KIILLEENYRSTQKILDCANELIKNNVNRK 305

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             +                     LW         +    +  + SY +        +  
Sbjct: 306 EKN---------------------LW-------TKKEGGDEIIYKSYQN-------ENYE 330

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  +A  +SN+I                 DI VL R    +  I    R       I+  
Sbjct: 331 AIEVAQNVSNLIFEG----------YNLSDIAVLYRANFQSFAIENALR----KNSIAYR 376

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETE 464
                   D   IKD++A  + I + +DD +F  ++  P  +     + K+      E  
Sbjct: 377 MVGGLKFYDRKEIKDILAYLKLIANPKDDNAFRRIINYPKRSIGNVSLQKLEEYCYSENI 436

Query: 465 TVY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK---KGRQ 515
           +++      E++   +    ++F++    I   I   +          +L +       +
Sbjct: 437 SLFDGLFRNEFLDSVSKKLRTEFENFRDMIFGFITCVEDTEVEILIKELLDSIKFVDYLR 496

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-HNEVRI 574
           +   +   +  + ++ FL        NSY  ++ L+  LE          + +  + V +
Sbjct: 497 ENEKKEFEKKAENINLFLEEI----SNSYKGIK-LLEYLETNSLLSDIDKTEDSDDTVTL 551

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            T+H+AKGLE  VVF++     +F  +   K                             
Sbjct: 552 TTIHSAKGLEYKVVFIIGMDEGIFPSERSIK----------------------------- 582

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                +    EE  RL YV +TRA ++L I    + +
Sbjct: 583 ----ERDDGLEEERRLFYVAITRAKEKLFISSTKSMT 615


>gi|314969858|gb|EFT13956.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA1]
          Length = 810

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +    LDF+DLI+ T  +L++      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  + + I +        +    IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +   +  
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSPSASGRSQSARGALRDDTPA 742


>gi|297538865|ref|YP_003674634.1| Exodeoxyribonuclease V [Methylotenera sp. 301]
 gi|297258212|gb|ADI30057.1| Exodeoxyribonuclease V [Methylotenera sp. 301]
          Length = 1158

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 152/970 (15%), Positives = 325/970 (33%), Gaps = 105/970 (10%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
            +   L P     +  I +Y + ++E     I       Q  +        +  L++F +T
Sbjct: 244  VLDTLTPRVQSLLMPIARYAASNLEADAE-IAPLRDWQQPITAEAECLPDWQALANFLVT 302

Query: 76   Q-KFTPQKNIIT----------QEINKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKS 122
            + + T +K++            +   +   ++   L+ SQ     + +    N  +  + 
Sbjct: 303  KSERTFRKSLNKNIGFPATPEGKTYKEAYSEIVSSLESSQVIASVLDLPALANIAENQEI 362

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
              A   L      H     +    +DF  +  +    L+    +  +  K+D +I+H+LI
Sbjct: 363  IKALTRLLILAERHLWIVFQAAGEVDFVAIAQSAQLALENEQGATDLALKLDYKISHLLI 422

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDTS +Q  +I  L E +          RTLF VGD  QSIY F  A+    L+   
Sbjct: 423  DEFQDTSPVQTRLIEKLIEGW-----QPDDGRTLFCVGDPMQSIYRFRKADVSLFLQASE 477

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSR 301
                         + ++L  + RS   ++  ++  F         +++ + +  +  ++R
Sbjct: 478  -----FGIGHLPLTRLQLSRNNRSHPAVVDWINNAFKQVFPANDNINQGAISYRKFTATR 532

Query: 302  IGQVGT-VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                G  V L   ++   D +                +     I A  +A  I  +   +
Sbjct: 533  PNVAGEGVTLHPLILEVTDQE-------------ESQKADLKQIEANYVADLIVKLRSEN 579

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                N          I VLVR R     +    R  +N   +     +   L +   ++D
Sbjct: 580  GAHYN----------IAVLVRSRSHLKELVSEIR--RNHPALKFQAVEIEHLNERQTVQD 627

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN----- 475
             ++L   +  + D   ++ +L++P    +  D+  +    +   T+++ +Q  A      
Sbjct: 628  ALSLVCALHHRADRTHWLNVLRAPWCGLTLADLHAL-AADNHRATIWQLMQDKARLSRLS 686

Query: 476  -CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
              G  +  HV   +    +         +         G +  +    N  + V  + + 
Sbjct: 687  EDGQLRLAHVNSVLTTAFNGQGRMPLRRWIESTWLQLGGGKCLVDAGDNRDVQVFFDLVE 746

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             T R+     +SL+  + +L        +        V+ +T+H +KGLE   V L    
Sbjct: 747  KTGRSGHLDIASLELGMQKLYA------KPDIEADGSVQFLTIHKSKGLEFDAVILPALN 800

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS------KSRNNIVSDLIKHLKKSTQEEYN 648
             Q  +  +   +     +++   + +   +S       +  ++   L    K   + E  
Sbjct: 801  RQPRNGDNELVLWQEVVVDNHLHLIVAPLKSKAVAKTNTGADVYDFLKNLEKTRAENELV 860

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            RLLYV  TRA  QL +      +N++   + T   ++   +   E           N + 
Sbjct: 861  RLLYVAATRAHRQLHLIASM-QANKEGEIKPTANSLLQGLWPAVEADFAQATPVKQNVNA 919

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                +     P+   L  E  +            +  P+         L  +      ++
Sbjct: 920  QAGLDIKQFKPQLQRLPSEHFVHISNSTLIGDDIVGRPLARHEGLKADLQMNE-----QS 974

Query: 769  NLESLLSDNQTFNR------GLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAK 814
            ++    S  +          G + H  +++                 +  +  +  +   
Sbjct: 975  DVLGDFSSERAREIDFQKHCGTLAHLYMELFAKTDLQSWTYQRLEQCQPAMQKWLAQQGH 1034

Query: 815  --LWPAKEYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPKKDIIISGRIDQ 870
                  +    +L ++   L +      +     S SE+S+        K+ +    ID+
Sbjct: 1035 VKQLADQGAMQVLAALQTTLASAAGQWVLQNHTDSVSELSLLQTQEDGVKNHV----IDR 1090

Query: 871  ISISQQNIFIFEYK-T----HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
              I     +I +YK T          ++  +   H  QL  Y  +    + N  +   ++
Sbjct: 1091 TFIENDVRWIVDYKLTTLDEAKSTTDDLSLMAEQHRPQLERYAGLFS--HENLPIKKAVL 1148

Query: 926  YVSEPKVFII 935
            ++S  K+  +
Sbjct: 1149 FLSAGKLVEL 1158


>gi|313817909|gb|EFS55623.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA2]
          Length = 810

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 191/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +    LDF+DLI+ T  +L++      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFL 533
           +++ +  +  + + I +        +    IL       +  +    +     + L E +
Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETMLENLVELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +   +  
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|300742291|ref|ZP_07072312.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567]
 gi|300381476|gb|EFJ78038.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567]
          Length = 844

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 126/750 (16%), Positives = 217/750 (28%), Gaps = 154/750 (20%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   + P   +  +S  + +    +          A  L+         +  
Sbjct: 61  AAAEMRERIQALIGPRAQHMWISTFHSFCVRVLRREAK-----ALGLKSTFTIYDSADS- 114

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L +  + +     K    + +  +   LK +L                Y    +    
Sbjct: 115 QRLLTLIIKELNLDTKKFAPKAVGHRISALKNELVS-----------AEEYSAAAANNPW 163

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  +    LDF+DLI  T  LLKK      I     ++  HIL+DE Q
Sbjct: 164 EKTIAQIYTVYTQRLRAANSLDFDDLIGKTVFLLKKFPE---IANYYRRKFRHILVDEYQ 220

Query: 187 DTSLIQWEVIRSLTEDFFVG-------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           DT+  Q+ ++R L      G             P  L  VGD  QSIY+F GA+ + +  
Sbjct: 221 DTNHAQYALVRELVGAHPQGNTREQGPYPDAPPPGELTVVGDSDQSIYAFRGADIRNITD 280

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +               II L  ++RST +IL+  + V     N +              
Sbjct: 281 FESDYSN--------AHIILLEQNYRSTQNILSAANAVIERNPNRRPKK----------- 321

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW              +              S    AR IA  I  +   
Sbjct: 322 ----------LWTASGEGTKIVGYVAE--------------SEHAEARYIAQEIDRLADE 357

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      I+  D+ +  R    +         L     +           +   IK
Sbjct: 358 ---------HGIKPSDVAIFYRTNAQSR----ALEELLMRAGLPYRVVGGTRFYERKEIK 404

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSED-DIFKICTQRHETETVYEYIQKFANCG- 477
           D +A  R + + +DD+S   +L  P        +         +  + +   +  A    
Sbjct: 405 DALAYLRALSNPDDDVSVRRILNEPKRGIGAKSETVVADHASAQRISFFAAARAAAAEPG 464

Query: 478 ---------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---V 525
                    + K+   +K + +L  IA+  S       +L               +    
Sbjct: 465 SVPGLGAAAVKKYAQFVKLMDDLAQIARTESAATTLEAVLEQSGYLAALRESKDIQDESR 524

Query: 526 IDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANH--------------- 569
           ++ L E L+  +  E  +  + L++ +  +                              
Sbjct: 525 VENLSELLDAMVEFEAENPGADLEQFLEHVSLVADADSIPSRGASADGQTPSAAQIAAEA 584

Query: 570 ------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                   + +MT+HTAKGLE PVVFL      +F H+                      
Sbjct: 585 AEAKAQGMITLMTLHTAKGLEFPVVFLTGLEHGLFPHQRALT------------------ 626

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                            +    E  RL YVG+TRA  +L I +    +   KS       
Sbjct: 627 ----------------DEGEMSEERRLAYVGLTRAMQRLYITRSETRTMWGKSQFNPPSP 670

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            + +        +++            AY 
Sbjct: 671 FLEEIPEELIEWRRLGGFAGFGASGMGAYA 700


>gi|325266832|ref|ZP_08133503.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella
           denitrificans ATCC 33394]
 gi|324981573|gb|EGC17214.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella
           denitrificans ATCC 33394]
          Length = 782

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 222/694 (31%), Gaps = 136/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L        N             +  +   +   S        
Sbjct: 80  GAGSGKTRVLTTRIAWLLQNGMAGVNNILAVTFTNKAAKEMQTRLGAMLPVSLRAMWLGT 139

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  L   FL    +     ++    + + +   +K  LK+             Q      
Sbjct: 140 FHGLCHRFLCLHYRDAQLPQSFQILDASDQLAVVKRLLKQLGIAEETVAPRVLQGFINAQ 199

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           ++     +  ++            A Y+E  ++  V+DF +L++ + ++L++    A +R
Sbjct: 200 KESGLRAEQLEAPDHHTKQLIECYAQYDELCRREGVVDFAELMLRSYEVLQRN---AALR 256

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               Q   HIL+DE QDT+ +Q+E ++ +  D             +FAVGD+ QSIY F 
Sbjct: 257 THYQQRFRHILVDEFQDTNTLQYEWLKLMAGDGAA----------VFAVGDDDQSIYRFR 306

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    + R  R     A         I+L  ++RS   IL   + V +   +  G +  
Sbjct: 307 GANVGNMTRLMREFGIDAP--------IKLEQNYRSVGTILQAANAVIAHNTDRLGKNLH 358

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                                       +++   +   ++++ D           A+ + 
Sbjct: 359 ---------------------------TEAEAGEKIRFFSAFNDLEE--------AKWMV 383

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I ++ G               + I +L R    + ++            I        
Sbjct: 384 DEIKSLHGEGHAL----------QQIALLYRGNAQSRVLEQQL----FQSGIPYKIYGGL 429

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEY 469
              +   +K  +A  R  ++ +DD + + ++  P        +  I      +  ++++ 
Sbjct: 430 RFYERQEVKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENIQAAAQGQGTSLWKA 489

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVI 526
               A     K    ++ +  L       +  +    IL      Q +  +      E  
Sbjct: 490 ACTLA-AKQQKVAAFVRLVDGLTEQVGVIALPEILQNILDDSGLYQHYRQQKQPAEQERT 548

Query: 527 DVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHSANHNEVRI 574
           + LDE +N       E++++  L E         +++ L        +       + V++
Sbjct: 549 ENLDELVNAAHFFKPEESAFEILPENAEALPEFPILAFLSNAALESGEAQAEQGQDAVQL 608

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE   VFL       F  +   K                             
Sbjct: 609 MTIHAAKGLEFDTVFLSGLEEGRFPSEFSLK----------------------------- 639

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                ++    E  RL+YV +TRA  +L +    
Sbjct: 640 -----EQGGIAEERRLMYVAITRARRRLYLSMAQ 668


>gi|240129046|ref|ZP_04741707.1| UvrD [Neisseria gonorrhoeae SK-93-1035]
 gi|268687424|ref|ZP_06154286.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035]
 gi|268627708|gb|EEZ60108.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035]
          Length = 735

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        I  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTIENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|225375922|ref|ZP_03753143.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM
            16841]
 gi|225212243|gb|EEG94597.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM
            16841]
          Length = 1182

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 136/916 (14%), Positives = 293/916 (31%), Gaps = 130/916 (14%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ----KFTPQKNIITQEINKKSPD 95
            E    + L+K ++L + +    +    S +    L      +  P K  + + + +++ D
Sbjct: 248  EKAVRSDLEKYESLSKLTSFCELSVALSDIKYDRLASSRGFEGDPDKLELVKSLREQAKD 307

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
            + +KL K               +        + L K     +  AK++  ++DF D+   
Sbjct: 308  VVKKLCKQYFFCSPEMMIEQLERTEPMLEEVVRLTKQFADEFAAAKRRKNLVDFHDVEHF 367

Query: 156  TNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
               +L   +   +     +       I+IDE QD++ +Q  ++RS++ +           
Sbjct: 368  ALQILVDEETEKAKKTAEEFRDTFEEIMIDEYQDSNEVQETLLRSISRE-------ERGE 420

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              +F VGD KQSIY F  A P+  +++                 I+L  +FRS  ++LT 
Sbjct: 421  NNIFMVGDVKQSIYRFRLARPELFMKKYDSYS----LEESTTQRIDLHKNFRSREEVLTC 476

Query: 274  VDKVFSIPENA--QGLSEDSTTTIRHRSSRIG-----QVGTVQLWEQVVSQHDSQCNPQQ 326
             + +F          +  D+   +   +S          G  +  E+   Q  +   P+ 
Sbjct: 477  TNDIFYKIMARSLGNVEYDAEAALYPGASYPAIEMKKTAGKEETAEEQTKQSIADFTPEI 536

Query: 327  ESWTSYFDSLPQE---SSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVR 381
                S  + L         ++ A+ +A  I +++ T  +     G+ R  +  DI++L+R
Sbjct: 537  LLADSNDELLEDTEFSDKKTLEAKIVAEEIRHLMKTQPVTDKATGELRAARYSDIVILLR 596

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                          + N   I             + ++ ++++ R + +   D+    +L
Sbjct: 597  SLSGWA---DSLVEVLNGNGIPAHTVSSTGYFSTVEVQTVLSMLRLLDNPRQDIPMAAVL 653

Query: 442  KSPLFNFSEDDIFKICTQRH-------------------------ETETVYEYIQKFANC 476
            +SP+   +++++  +  +                           ++E   E  QK    
Sbjct: 654  RSPMAGLTDEELAVLRLEDGSVPFHEAVLELAEGLYEEDGQKEISDSEADSEADQKQGRN 713

Query: 477  GISKFQHVIKY------------IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GN 523
               K ++ I+               +L  +      H+   +IL          +   GN
Sbjct: 714  ADEKTENHIEITAHRKLLKFYKKYKQLRQLVPDTPIHELIEIILRETGYGHYVAAMPAGN 773

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVH 578
                 L+  L      E+ SY  L   +  +++                N + VRIM++H
Sbjct: 774  RRTANLNMLLEKAAAYEKTSYKGLFHFVRYIDELQKYDVDFGEADMVGENEDVVRIMSIH 833

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V +   G          KM + P L           + KS       + K 
Sbjct: 834  KSKGLEFPIVIVSGMGKNFNKQDTRSKMVLHPELGIGLDYMDGKKRIKSPTIAKKAIAKQ 893

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----------------------KS 676
            +      E  R+LYV +TRA ++LI+      + EK                      + 
Sbjct: 894  IDLENLGEELRVLYVALTRAKEKLILTGTLKDAPEKLEFFRQQANLSKAADRPLSYLTRE 953

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                + D +  +  +      +++  +              + + T    E         
Sbjct: 954  GASGYLDWILPAVLSYGDKYPVRIVEAAELVLDEVENQLEQNEDLTERIEEIEAADTQLV 1013

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN------------------- 777
             ++ ++         +       S  + K +   E   ++                    
Sbjct: 1014 GQLKQRFSQRYPYQTDILRKNKYSVSELKHRAMREKFEAEQEETIPAFLEEPVTPTIPLF 1073

Query: 778  -------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                         +   RG  +H++++      E      + +   K  K+         
Sbjct: 1074 IQREESVEQETANRGALRGTAVHRVMECYDFASEKSVHEQMEAM-EKEEKITADMRALVR 1132

Query: 825  LLSITRLLENPMMTTA 840
              ++   + +      
Sbjct: 1133 EQTVADFVSSETGKRM 1148


>gi|156972692|ref|YP_001443599.1| DNA-dependent helicase II [Vibrio harveyi ATCC BAA-1116]
 gi|156524286|gb|ABU69372.1| hypothetical protein VIBHAR_00351 [Vibrio harveyi ATCC BAA-1116]
          Length = 724

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 179/549 (32%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+      ++R        HIL+DE QDT+ I
Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +            
Sbjct: 230 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I                  
Sbjct: 311 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R I ++
Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLIANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T++E           A          
Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWEASVAMLDEKVLAGRAAGALSRF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ +  L         H     ++        +    G +    I+ L+E +  T + E+
Sbjct: 463 IELVTALEDDTIEMPLHHQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 523 PEEAEDMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 609 QKLYITYAE 617


>gi|325205321|gb|ADZ00774.1| DNA helicase II [Neisseria meningitidis M04-240196]
          Length = 735

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 99/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T   E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASQEQGVSLWQAACNAGAKAAKVAAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L +
Sbjct: 467 QVGQMPLPEIIAGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPD 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|257092577|ref|YP_003166218.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045101|gb|ACV34289.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 724

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 111/628 (17%), Positives = 213/628 (33%), Gaps = 112/628 (17%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + E F +L +     + +  K ++ + +N        +  +        ++
Sbjct: 96  LRAHHREAGLPETFQILDAA---DQLSAIKRLL-KNLNVDDEKFPPR--ELMHFINAHKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +       ++     +    L   YE   ++  V+DF +L++ + +LL++ +    +   
Sbjct: 150 QGIRAAQAEAYDHYTSRRVELYTEYEGQCQREGVVDFAELLLRSYELLQRNE---PLCRH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   HIL+DE QDT+ +Q+  ++ L     V     +    +FAVGD+ QSIY+F GA
Sbjct: 207 YQERFRHILVDEFQDTNRLQYAWLKLLAGRGSVR--PETPGACVFAVGDDDQSIYAFRGA 264

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E   +   +R  +          S+I L  ++RS  +IL   + +        G +  + 
Sbjct: 265 EIGNMRDLQREFE--------LPSVIRLEQNYRSHGNILDAANALIKQNVGRLGKNLWTE 316

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G+   V                             +  S    AR I   
Sbjct: 317 AG-------AGEPIRVF----------------------------EGISDFDEARFIVDE 341

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           IS ++             I    I +L R    + ++            +    +     
Sbjct: 342 ISELLREG----------IGRDQIALLYRSNAQSRVLEHQL----FTAGVPYRVHGGLRF 387

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ 471
            D   IK  +A  R I + +DD +F  ++  P        +  +         ++Y    
Sbjct: 388 FDRQEIKHALAYLRLIANPDDDTAFARVVNFPTRGIGTRSLEALQEAAQRNNASLYNAAA 447

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLD 530
             A    +     +  I +L    +  S  +    ++     RQ +++   G + ++ LD
Sbjct: 448 SLAGKAGTAVARFVALIEDLRADTRARSLPEVVDHLIDKTGLRQHYLAEKEGQDRLENLD 507

Query: 531 EFLNFTLRN--EQNSYSSLQE-----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKG 582
           E +N       E +            L S L        +         V++MTVH AKG
Sbjct: 508 ELINAATTFLYEDSDQDGEPAANGGPLASFLAHASLEAGEHQAGEGETAVQLMTVHAAKG 567

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE  VVF+      +F H++                                     +++
Sbjct: 568 LEFDVVFITGLEQGLFPHEN----------------------------------AAQERA 593

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNT 670
             EE  RL+YV +TRA  +L +      
Sbjct: 594 GLEEERRLMYVAVTRARQRLYLTHAQTR 621


>gi|254392029|ref|ZP_05007220.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC
           27064]
 gi|294814551|ref|ZP_06773194.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|326442941|ref|ZP_08217675.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705707|gb|EDY51519.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC
           27064]
 gi|294327150|gb|EFG08793.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 825

 Score =  284 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 118/737 (16%), Positives = 227/737 (30%), Gaps = 137/737 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 130 AAGEMKERVEQLVGPRAQAMWVLTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 184

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P+K    +  + K  +LK +L        +     +    F+ T   
Sbjct: 185 RLMALVCRDLDLDPKK-FPPKSFSAKISNLKNEL------IDEESFADSAADGFEKT--- 234

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   ++   LDF+D+I+ T  +L+       +     +   H+L+DE Q
Sbjct: 235 ---LAQAYRMYQARLREANALDFDDIIMTTVHMLQ---AFPDVAEHYRRRFRHVLVDEYQ 288

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L    +        P  L  VGD  QSIY+F GA  + +L+ +    +
Sbjct: 289 DTNHAQYTLVRELVGPGYE----DLPPAELCVVGDADQSIYAFRGATIRNILQFEEDYPE 344

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    + + L  ++RS+  IL+  + V    E+ +  +                  
Sbjct: 345 --------ATTVMLEQNYRSSQTILSAANAVIERNESRRPKN------------------ 378

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW        +  +  Q           +       A+ +A  I  +          
Sbjct: 379 ---LW-------TNAGDGAQIIGYVADTEHDE-------AQFVADEIDRLTDASE----- 416

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               ++A D+ V  R    + +   +         +           +   ++D++A  R
Sbjct: 417 ----VKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERREVRDVLAYLR 468

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY--IQKFANCGISKFQH 483
            + + ED +    +L  P     E     I      E  T  +       A    ++  +
Sbjct: 469 VLANPEDSVPLRRILNVPKRGIGERAEAMIDALSLREKITFPQALIRVDEAYGMAARSAN 528

Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
            +K  + L+   +        P      +L       +  +    +    I+ L E    
Sbjct: 529 AVKRFNVLMGELRTIVDSGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 588

Query: 536 TLRNEQ--------NSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            L  EQ            +L E + +  L      I          + +MT+HTAKGLE 
Sbjct: 589 ALEFEQARAEGEGEGGAGTLAEFLEQVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEF 648

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVFL      VF H                                       +K   E
Sbjct: 649 PVVFLSGMEDGVFPHMRALS----------------------------------QKKELE 674

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YVG+TRA ++L + + +  S   +         + +        ++   + +  
Sbjct: 675 EERRLAYVGITRARERLYLTRSTMRSAWGQPAYNPPSRFLEEIPVRHLEWRRTGPSAAPA 734

Query: 706 KDEWIAYEWSTHHPENT 722
                        P + 
Sbjct: 735 GPVAGFGSRLPSAPSSR 751


>gi|256821408|ref|YP_003145371.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
 gi|256794947|gb|ACV25603.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
          Length = 726

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 105/582 (18%), Positives = 187/582 (32%), Gaps = 120/582 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEEA K+  ++DF +L++   +L         +         HIL+DE QDT+ IQ
Sbjct: 173 VYYAYEEACKRGGLVDFNELLLRAYELWANNPH---LLKHYQDRFQHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L           +    +  VGD+ QSIY + GA  + + + ++          
Sbjct: 230 YAWIRLLC----------NDNNRITIVGDDDQSIYGWRGARIENIQQFEKDFP------- 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +  L  ++RST+ IL   + V +      G S                     LW 
Sbjct: 273 -DCKVSRLEQNYRSTSTILKAANAVIANNHERMGKS---------------------LW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +     S F+   +       AR IA  I + I               
Sbjct: 310 ------TDGNQGEPIILYSAFNEQEE-------ARFIAARIEDWIQQGN----------S 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             DI +L R    + ++            I           +   IKD +A  R + +++
Sbjct: 347 YDDIAILYRSNAQSRILEDAM----LQKGIPYRIYGGLRFFERAEIKDTLAYMRLMANRD 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD SF  ++  P     E  +  I    R E  ++++   K            +     +
Sbjct: 403 DDTSFERVVNQPARGLGEKSVDLIRAQAREEQTSLWQAANKMVVEQLLPPRAKTAMAGFL 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE-- 540
             I+EL          +   +++      + +    G +     + L E +N T   +  
Sbjct: 463 HLINELESSTAELDLWEQTDIVIEHSGLLEMYSKEKGEKGQARKENLQELVNATREFDPD 522

Query: 541 ---QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               +    +  L + +        +         V++MT+H+AKGLE P+VF+     +
Sbjct: 523 EVVPDELPDMSPLQAFIAHATLEAGETQADEYQESVQLMTLHSAKGLEFPLVFIAGVEEK 582

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H+                                           EE  RL YVG+T
Sbjct: 583 LFPHQMSVDEPGG----------------------------------LEEERRLAYVGIT 608

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           RA  QL +          +         + +         ++
Sbjct: 609 RAMKQLYLTFAEKRRIFGRETYPQQSRFIREIPDELLTEVRL 650


>gi|88608415|ref|YP_506245.1| UvrD/Rep family helicase [Neorickettsia sennetsu str. Miyayama]
 gi|88600584|gb|ABD46052.1| helicase, UvrD/Rep family [Neorickettsia sennetsu str. Miyayama]
          Length = 630

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 114/668 (17%), Positives = 212/668 (31%), Gaps = 135/668 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + NE  + + + +  + +  +   +   +  +      +  K            ++++  
Sbjct: 72  AANEMIQRVNEIVGEMKFHWIGTFHAAAAKILRIEAEKLGFKPD-----FTILDVDDQVR 126

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           +L           +K    + + KK   +    K       ++R        F+      
Sbjct: 127 MLQKV-----AQEKKIEADKALLKKYLSVISAWKDKAFTPSRVRFNNAANTWFEKQ---- 177

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  +   Y++  K+N  +DF DL+++   L  K    A    K  ++  +I++DE QD
Sbjct: 178 --ALSVYDTYQKKLKENNSMDFGDLLMHNVTLFNKD---AETLEKYKEKFRYIMVDEYQD 232

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+L Q+  +R L +              +  VGD+ QSIY + GAE   +LR  +  +  
Sbjct: 233 TNLCQYLWLRLLAQ----------KHSNICCVGDDDQSIYGWRGAEVGNILRFAKDFE-- 280

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST  ILT    +    ++       +                
Sbjct: 281 ------GAKVIKLEQNYRSTNKILTAAHNIIKNNQSRLTKKLWTAYP------------- 321

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            ++    +Y DS  +       AR I   I             +
Sbjct: 322 ---------------GGEEIQIFTYMDSEQE-------ARAIIRMIKE-----------R 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           K + +  D  +LVR    T               +           +   I+D++A  R 
Sbjct: 349 KLLCRYSDTAILVRAGFQTRAFEEA----AIHENVPYRVVGGLKFYERKEIRDIIAYLRL 404

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK---FQH 483
           +++  D+L+F  ++ +P     +  + KI      E  +++E ++K       K      
Sbjct: 405 VVNPNDNLAFERIINTPKRGLGQASLNKIYNYSLEEGCSMFEAVRKLEENEKLKSTALLT 464

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
            +K + +    +   S HD    I                  I+ +DE        +   
Sbjct: 465 FVKQVRKWQEESLNHSLHDLLKKITLESGYISAL-KEQDETRIENVDELFRVIQEFDDA- 522

Query: 544 YSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                     L+      +      N + V +MT+H +KGLE   VFL       F H  
Sbjct: 523 -------TDFLQHVSLLTESDAQINNSDAVNMMTLHASKGLEFEQVFLPGWEDGTFPH-- 573

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                           +         EE  RL YVG+TRA   L
Sbjct: 574 --------------------------------VRSLCSTEQIEEERRLAYVGITRAKRFL 601

Query: 663 IICKHSNT 670
            I      
Sbjct: 602 TITSAHRR 609


>gi|330718929|ref|ZP_08313529.1| ATP-dependent DNA helicase PcrA [Leuconostoc fallax KCTC 3537]
          Length = 745

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 104/693 (15%), Positives = 204/693 (29%), Gaps = 136/693 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC-IEE 64
           G    ++  L ++    +    +                 + ++   L      +     
Sbjct: 30  GAGSGKTRVLTHRIAHLIEDLNIFPWRILAITFTNKAAKEMKERIARLVDEDVARDIWVS 89

Query: 65  RFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            F  L+   L +             + T         +   L    +++           
Sbjct: 90  TFHALAVRILRRDGEKIGLSRNFTIVDTSAQRTLMKRVINDLNLDTNQYDPRAILGAISN 149

Query: 119 MFKSTLASLTLAKYLNAHYEE-----------AKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                L+    AK     Y+E             K+   +DF+DLI+ T +L ++     
Sbjct: 150 AKNDMLSPQDFAKQAGNIYQETVAEAYAAYQAELKRAQSVDFDDLIMLTIELFRQSPD-- 207

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +  +   +  ++ +DE QDT+  Q+ ++  L              + L  VGD  QSIY
Sbjct: 208 -VLERYQNQFEYLHVDEYQDTNDAQYTIVNMLAA----------RSKNLAVVGDADQSIY 256

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA    +L  ++              ++ L  ++RST +IL   + V +     +  
Sbjct: 257 GWRGANMNNILNFEQDYP--------DAHVVLLEQNYRSTQNILDAANDVIANNNERRPK 308

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                QLW             ++ ++        +       A 
Sbjct: 309 ---------------------QLW-------TQNGEGEKITYYRAQTERDE-------AN 333

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I  +                  D  +L R    +  +            +     
Sbjct: 334 FVLAKIQKLREEQ---------KHAYSDFAILYRTNAQSRNMEEAL----VKANMPYTMV 380

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                 +   I D+++    I +  D+ +F  ++  P        I  +    +  E  Y
Sbjct: 381 GGHKFYERKEILDIISYLNLIANPNDNAAFERVVNEPKRGIGPTSINHLREFANRMEWSY 440

Query: 468 -------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                  E   +     ++K       +H L   A+F +  +   +++     R+    +
Sbjct: 441 MTAIDSIELAPELTARAVTKLLAFADLMHTLQQQAEFLTVTELAEMVMTRSGYRKMLQDK 500

Query: 521 FGNE---VIDVLDEFLNFTLRNE----QNSYSSLQELISEL-EQYPPTIKRAHSANHNEV 572
              +    ++ L+EFL+ T   +     +   ++  LI  L      +           V
Sbjct: 501 NDPDSQARLENLEEFLSVTKEFDDKYNADDIDAVNPLIDFLGSTALMSDLDDFEEGDGAV 560

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVF+V     +F                                  
Sbjct: 561 TLMTLHAAKGLEFPVVFMVGLEEGIFP--------------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                       EE  RL YVG+TRA  +L + 
Sbjct: 588 -LARATQDDDQLEEERRLAYVGITRAMKKLFLT 619


>gi|254670947|emb|CBA07597.1| DNA helicase II [Neisseria meningitidis alpha153]
          Length = 735

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 99/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T   E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASQEQGVSLWQAACNAGAKAAKVAAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L +
Sbjct: 467 QVGQMPLPEIIAGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPD 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|114798822|ref|YP_761616.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444]
 gi|114738996|gb|ABI77121.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444]
          Length = 781

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 115/645 (17%), Positives = 202/645 (31%), Gaps = 114/645 (17%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A      Y+   +     DF DL+I+   + ++      I  +      +IL+DE QDT+
Sbjct: 198 AIKCYEIYQARLRVLNACDFGDLLIHNITIFQESPD---ILREYHDRFRYILVDEYQDTN 254

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q+  +R L +            + L  VGD+ QSIY + GAE   +LR ++       
Sbjct: 255 VAQYLWLRLLAQ----------GSKNLCCVGDDDQSIYGWRGAEVDNILRFEKDFP---- 300

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RST  IL     V +  +   G +                     
Sbjct: 301 ----GAKVVRLERNYRSTRHILAAASSVIAHNKGRLGKT--------------------- 335

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L+    S  +   +  +      +D   +        R IA  I + +            
Sbjct: 336 LYVGNDSAVNEDTDAPKVKVRGLWDGEAES-------RLIADDIESWVRGGG-------- 380

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +     VLVR              L     I           +   I+D MA  R I 
Sbjct: 381 --RHDGCAVLVRASWQMRAFEERFILL----GIPYRVIGGPRFFERAEIRDAMAYLRLIR 434

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQ 482
           S +DDL+F  ++  P     +  + K+    R +  +++            K        
Sbjct: 435 SPDDDLAFERVVNEPKRGVGDTSLAKLQSYARQDGRSLFTLTPMVLQTDEIKGGAKRGLT 494

Query: 483 HVIKYIHELI-HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
             I  I+     +A      +   +IL               +    LD           
Sbjct: 495 TFIDQINLWRGKLAGGMPHTELAEMILEESGYTDMLQKDRSPQAQTRLDNLKELVRAM-- 552

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
             + +L   +  +E        A     ++V+I+T+H AKGLE PVVFL     +VF  +
Sbjct: 553 GEFDTLAGFLEHVELVMDAS--AGGNGEDQVQILTLHAAKGLEWPVVFLPGWEEEVFPSR 610

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                  +                                   EE  RL YVG+TRA ++
Sbjct: 611 RSLDESGL--------------------------------KGLEEERRLAYVGITRARER 638

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
             I   +N     +     W  ++   F ++   + +   +        A   +      
Sbjct: 639 CYISFVAN-----RQIYGRWQAVMPSRFIDELPPEHVDAVSETGYSGLPASADAFSGTIE 693

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
              ER +   Q    +++ +    P      +   L  +   T G
Sbjct: 694 DLGERSD--YQSPGWKRLKENAGRPTGAPPRDAAGLTATASGTSG 736


>gi|254674097|emb|CBA09881.1| DNA helicase II [Neisseria meningitidis alpha275]
          Length = 735

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKIAAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 467 QVGQLPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|294794377|ref|ZP_06759513.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44]
 gi|294454707|gb|EFG23080.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44]
          Length = 1251

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 116/698 (16%), Positives = 219/698 (31%), Gaps = 62/698 (8%)

Query: 28  VSDINKYVSLSME-TGNPTILKKAQTLQQASQTQCIEERFSLLSSF------FLTQK--- 77
              + +   + ++ TG             A       + +  +         F+  +   
Sbjct: 237 RERLERMEQILLDPTGPHKWQNIYDNQLAALGMLSAAQTWDDMGEACKHMDTFIKDQFRM 296

Query: 78  FTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRDRFNTYK---MFKSTLASLTLA 130
            + +       +  +   L    K+ LK  Q     + +     +    +      + L 
Sbjct: 297 GSKEAQAYDPILVAEFKSLGGQNKDDLKAMQAAIFTVPEATLQEQFKAQYPIIEGLVELT 356

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEV 185
              +  Y + K++  ++DF DL      LL     +     + +  ++      I++DE 
Sbjct: 357 IAFHQAYRDMKQEQGIMDFSDLEHLCLALLVEPGTEDDPQPSEVAKELQDTFKEIMVDEY 416

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q  +I  +           S     F VGD KQ+IYSF  A+    + +     
Sbjct: 417 QDTNGVQETIINLI-----------SRIDNRFYVGDVKQAIYSFRMADSSLFMEKYNTYG 465

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR---- 301
                       I+L  +FRS A+IL   + +F           + T        R    
Sbjct: 466 ----GNDAVERRIDLAKNFRSDANILAATNFLFYQIMTEDAAELNYTEAESLIPGRIVED 521

Query: 302 ---IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                  G V+L    VS+     +   E      D      +       I   I  +  
Sbjct: 522 APEDWVGGDVELQLLDVSKDTLGASESDE------DEGDDPENNERELDFIIQKIKEIHA 575

Query: 359 TDTIF--SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                   +G  R I+ +D  +L R                    I  V N+R    +  
Sbjct: 576 AKKQVQNPDGTFRQIEWRDFAILRRSLAGWGTRAV---EAMRQAGIPAVVNERDGYFEAQ 632

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            I+ L+AL   I + E DL    +L S L     +++  +     E              
Sbjct: 633 EIQLLLALLSVIDNPEQDLPMAAVLHSGLVGLDANELGALRLS-GEGSLWSLMPAYAEEA 691

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
              +    I ++     +++     D    I  ++           G      +    + 
Sbjct: 692 QDERLLAFIGHMERWRTLSRRHGVTDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYDR 751

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAH-----SANHNEVRIMTVHTAKGLESPVVFL 590
               E + +  L   +  +E    + +        S   N VR+MT+H +KGLE PVVFL
Sbjct: 752 AKGYEASGFRGLFRFLRFVESLRDSNQDMPLANVVSEADNVVRLMTIHKSKGLEFPVVFL 811

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                +        ++ I  +            +          +    + + + E  R+
Sbjct: 812 SGVQKRFNMMDLRSELLIDKNAGLGLKGYFPDIRVSFPTMPWFYVKDVKEAALKAEEQRI 871

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           LYV +TRA D+L +          K    T  +++ ++
Sbjct: 872 LYVALTRARDKLFMTGFIKGFKNSKGVLSTIGELIKNA 909



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 68/224 (30%), Gaps = 14/224 (6%)

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
            + +    + +  E +   ++   E      L  PI         L  S    +    L+S
Sbjct: 1021 DATRRTAKISVSELKRRFQERELEAGTIDTLNEPIATVEVSADALANSVFG-RKPQALQS 1079

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-SITRL 831
                      G ++H+ +Q +  +   +               +  +E   L   S+ + 
Sbjct: 1080 EDDVLTGAQWGTLMHEAMQWLPLVKYTQASLTKELDALVAKGTFTEEERNLLSDTSLYKF 1139

Query: 832  LENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFE 882
              + +    + +     E+  S               +++ + G ID          + +
Sbjct: 1140 FNSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGIIDTAFEEDGEWVLVD 1199

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            YKT        E +   +  Q+ +Y++ L+       +    IY
Sbjct: 1200 YKTDRVTSG--EELIKRYKIQMDLYKEALQRL-TGMPVKACYIY 1240


>gi|290958050|ref|YP_003489232.1| ATP-dependent DNA helicase II [Streptomyces scabiei 87.22]
 gi|260647576|emb|CBG70681.1| putative ATP-dependent DNA helicase II [Streptomyces scabiei 87.22]
          Length = 836

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 116/738 (15%), Positives = 225/738 (30%), Gaps = 143/738 (19%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 183

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + K  +LK +L   +D               ++T   
Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEEDF------------AAQATDGF 230

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 231 EKTLAQAYALYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287

Query: 187 DTSLIQWEVIRSLTEDFFV-----GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           DT+  Q+ ++R L                  P  L  VGD  QSIY+F GA  + +L+ +
Sbjct: 288 DTNHAQYALVRELVGTSEHPVDVPPDEWDVPPAELCVVGDADQSIYAFRGATIRNILQFE 347

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         + I L  ++RST  IL+  + V    E+ +  +             
Sbjct: 348 EDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------- 386

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW        +     Q +         +       A+ +A  I  +     
Sbjct: 387 --------LW-------TNAGAGAQITGYVADTEHDE-------AQFVADEIDRLTDAG- 423

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                     +A D+ V  R    + +   +         +           +   ++D+
Sbjct: 424 --------DAKAGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDV 471

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK 480
           +A  R + + ED +    +L  P     +     +    + E  +  + +++        
Sbjct: 472 LAYLRVLANPEDSVPLRRILNVPKRGIGDRAEAMVDALSQREKISFPQALKRVDEAYGMA 531

Query: 481 FQ--HVIKYIHELIHIAQF-----CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
            +  + +K  + L+            P      +L       +  +    +    I+ L 
Sbjct: 532 ARSTNAVKRFNTLMDDLCTVVESGAGPATILEAVLERTGYLAELQASTDPQDETRIENLQ 591

Query: 531 EFLNFTLRNEQN-------------SYSSLQELISELEQYPPTIKRAHSANHNE--VRIM 575
           E     L  EQ              + + L   +  +     + +           + +M
Sbjct: 592 ELAAVALEFEQESGAAEAEGEEAAANPAGLPAFLERVALVADSDQIPDEEEDGSGVITLM 651

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+HTAKGLE PVVFL      VF H                                   
Sbjct: 652 TLHTAKGLEFPVVFLTGMEDGVFPHMRALG------------------------------ 681

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
               +    EE  RL YVG+TRA ++L + + S  S   + +       + +        
Sbjct: 682 ----QTKELEEERRLAYVGITRARERLYLTRSSLRSAWGQPSYNPPSRFLEEIPATHLEW 737

Query: 696 KKIKLTNSINKDEWIAYE 713
           K+   +  ++        
Sbjct: 738 KRTGASTPVSSGPASGVA 755


>gi|289424917|ref|ZP_06426696.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187]
 gi|289427700|ref|ZP_06429412.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165]
 gi|295131282|ref|YP_003581945.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137]
 gi|289154616|gb|EFD03302.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187]
 gi|289159191|gb|EFD07383.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165]
 gi|291375534|gb|ADD99388.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137]
 gi|313763127|gb|EFS34491.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA1]
 gi|313773164|gb|EFS39130.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL074PA1]
 gi|313793367|gb|EFS41425.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA1]
 gi|313800989|gb|EFS42257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA2]
 gi|313808729|gb|EFS47183.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA2]
 gi|313810354|gb|EFS48068.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA1]
 gi|313816467|gb|EFS54181.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA1]
 gi|313819821|gb|EFS57535.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA1]
 gi|313823311|gb|EFS61025.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA2]
 gi|313824786|gb|EFS62500.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA1]
 gi|313828273|gb|EFS65987.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA2]
 gi|313830207|gb|EFS67921.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL007PA1]
 gi|313832960|gb|EFS70674.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL056PA1]
 gi|313838057|gb|EFS75771.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL086PA1]
 gi|314917767|gb|EFS81598.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA1]
 gi|314919507|gb|EFS83338.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA3]
 gi|314925815|gb|EFS89646.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA3]
 gi|314930099|gb|EFS93930.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL067PA1]
 gi|314957100|gb|EFT01205.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA1]
 gi|314957690|gb|EFT01793.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA1]
 gi|314960758|gb|EFT04859.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA2]
 gi|314972985|gb|EFT17081.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA1]
 gi|314975621|gb|EFT19716.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL045PA1]
 gi|314984812|gb|EFT28904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA1]
 gi|314986165|gb|EFT30257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA2]
 gi|314988777|gb|EFT32868.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA3]
 gi|315079961|gb|EFT51937.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL078PA1]
 gi|315083289|gb|EFT55265.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA2]
 gi|315086938|gb|EFT58914.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA3]
 gi|315096648|gb|EFT68624.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL038PA1]
 gi|315097877|gb|EFT69853.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA2]
 gi|315100641|gb|EFT72617.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA1]
 gi|315109268|gb|EFT81244.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA2]
 gi|327325064|gb|EGE66870.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA3]
 gi|327325309|gb|EGE67114.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA2]
 gi|327443823|gb|EGE90477.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA1]
 gi|327449135|gb|EGE95789.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA2]
 gi|327449263|gb|EGE95917.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA2]
 gi|327451317|gb|EGE97971.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA3]
 gi|327451706|gb|EGE98360.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL092PA1]
 gi|328752262|gb|EGF65878.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA1]
 gi|328755353|gb|EGF68969.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA2]
 gi|328756392|gb|EGF70008.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL020PA1]
 gi|328761099|gb|EGF74648.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL099PA1]
          Length = 810

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +    LDF+DLI+ T  +L++      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  + + I +        +    IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +   +  
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|308388456|gb|ADO30776.1| DNA helicase II [Neisseria meningitidis alpha710]
          Length = 735

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 467 QVGQMPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|295100618|emb|CBK98163.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii L2-6]
          Length = 887

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 108/635 (17%), Positives = 204/635 (32%), Gaps = 124/635 (19%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            ++ K   +K  + +      ++       K          LA  + A YE+  K+    
Sbjct: 187 SVDDKFFPVKSAINQMSRWKDQLISPAEALKTPARDTK-GALAAKVYAAYEKKLKEAGAF 245

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI  T  LL + +    +R     +  ++L+DE QDTS+ Q+ ++  LT       
Sbjct: 246 DFDDLIYQTVILLSEHED---VREFYQNKYKYLLVDEYQDTSVAQFRLVSLLTG------ 296

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                 + +  VGD+ QSIY F GA  + +L  +RI         +    I L  ++RST
Sbjct: 297 ----PEKNICVVGDDDQSIYRFRGATIENILNFERIY--------KGTRTIRLEQNYRST 344

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           ++IL   + V       +G +                     LW +       Q      
Sbjct: 345 SNILNAANCVIQHNTERKGKT---------------------LWTKNGEGDKVQ------ 377

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   +    +    A  IA  I   +                 D  +L R    + 
Sbjct: 378 --------VYTAENEQDEASHIADVIGQHLKEGG----------HLADHAILYRMNAQSA 419

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            I            I           D   +KD+ +    + +  DD+    ++  P   
Sbjct: 420 PIESYF----TRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEPARK 475

Query: 448 FSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPH 501
                I  I      +  ++ + I            I+          +L    +  +  
Sbjct: 476 IGATTIEVIADLAAQQGISMLDVISHADQYAKLSRAIAPLFKFWDIYQKLQESLETKTLD 535

Query: 502 DFFTLILGAKKGRQQFIS------RFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISE 553
           +F + ++     R    +          + +  L + +N       +    +SL+  + +
Sbjct: 536 EFASDVIEITGYRAMLEADAAKGHEDAADRLQNLGQLVNNVKSYCDQHGEEASLEGYLED 595

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +             + ++V +MT+H+AKGLE P VFL+     VF  +  K         
Sbjct: 596 IALISDIDSYN--ESADQVVLMTIHSAKGLEFPYVFLIGMEEGVFPSEMSK--------- 644

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT--- 670
                                      ++  EE  RL YVG+TRA  +L I         
Sbjct: 645 -------------------------YSEADLEEERRLAYVGITRAKKELYISNSVTRMLY 679

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
              +++    +   +   +  + R   ++  + + 
Sbjct: 680 GRTQRNEPSRFLREIEPEYIEETRSPVLEQRSRLG 714


>gi|284043266|ref|YP_003393606.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283947487|gb|ADB50231.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 1184

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 136/946 (14%), Positives = 291/946 (30%), Gaps = 116/946 (12%)

Query: 25   YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
               ++ +     +++     ++ +    L +  +        S     +        +  
Sbjct: 193  ALAIARVQAEAEVAVARDGRSVFRARLALAECERLLERVAAASAGDPGYAPSPGEVARLA 252

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            + +     + +  E  + +   ++      +   +     A L         Y EAK++ 
Sbjct: 253  LPRNGRALAGEGCEGYRTALQAYVDACADAHAVPVHGLLDALLR---GFGRRYAEAKQRA 309

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
              +DFEDL +  N LL++ +    +R +  +   H+++DE QDT+ +Q E++  +  +  
Sbjct: 310  SAVDFEDLELRANRLLREHEE---LRARYAERFVHVMVDEFQDTNPLQLELLERIAGE-- 364

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                       LF VGDE QSIY F  A+ +         ++R     +  +   L  +F
Sbjct: 365  ----------RLFTVGDELQSIYGFRHADVEL-------FRRRRKALAEHGAAASLATNF 407

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A+IL  ++  F+           +    R  +  +     V+L    V    +    
Sbjct: 408  RSHAEILETLNVAFAPRFGESFTPLVAGREERADALPVAGP-RVELLVVDVRADWANAGL 466

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
              E   +              AR +A  +  ++              +A D+++L+R   
Sbjct: 467  LPEGMAAP-----APLWRVAEARALAARVRELLDGGR----------RAGDVVLLLRATG 511

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            D  +       L     +               ++DL+A    + +  D ++   +L SP
Sbjct: 512  DLAVYERALTDLA----VPTYVIGGRGYWAQQQVRDLVAYLGVLANPRDGVALQSLLASP 567

Query: 445  LFNFSEDDIFKICTQ----RHETETVYEYIQ---------KFANCGISKFQHVIKYIHEL 491
            L   S D + ++       R E E    +           + A     + + +  ++   
Sbjct: 568  LVGLSSDGLVQVVAAARASRREGEPPDPWWVLTEGRELLARLAPDDAERVEELRAWLPAE 627

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
               A   S       +L       + +    G   +  + + +      E      L+  
Sbjct: 628  RATAPRHSLESLLDRVLDQTGYDVELLRLPSGARRLANVRKLMRLAREFEAEEGRDLRGF 687

Query: 551  ISEL-----------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +  +           EQ   +         + VR+MT+H AKGLE PVV + D G     
Sbjct: 688  VDMVMELGGGLESSREQDRESEAPVEGEALDAVRLMTIHRAKGLEFPVVCVADLGRGS-P 746

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                  + +         +      +         + +   ++  +E  RL YV MTRA 
Sbjct: 747  AAGSDVVRVGRDGRVGIKLKTLDGSAPRPALAYRPIGEARARAESDEEARLYYVAMTRAR 806

Query: 660  DQLIICKHSNTSNEKKS----------NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            +QLI+     T    +                 ++   +  + E    +           
Sbjct: 807  EQLILSGAVPTEPWPEPKLGAPAITWIGPAFVPEIARLAAPDGEPSGVVSNEGQAVAYSV 866

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP-----------YILN 758
            +    +   P     E +         ++ P    + ++     P             L+
Sbjct: 867  VRPGAAALAPSLAGSEGDRGRVLSHARERTPAGRRAHVRARATRPIGDGGGTAPPVATLS 926

Query: 759  PSTID-------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL-PE 798
             +++                                      RG+I H LL+ +  +  +
Sbjct: 927  YTSLADHARCGYRFYLERVLRLPPVDDAPRGRGGRHGLAASTRGVIAHALLEQVDFVRAQ 986

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
                  +     +      A+E   +   + R L +P+     S             +  
Sbjct: 987  PPDAELVRRAAVRAGADPTAEELDEIRGLVVRFLASPLRERLASARDLR---REQAFSFA 1043

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI-EHIPYTHIAQ 903
              ++ + G  D I+       I ++K+      +  E +   +  Q
Sbjct: 1044 LDELPLVGVFDAIAREGNRTLIVDWKSDRLEGADPGETVARAYGLQ 1089


>gi|327332323|gb|EGE74059.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL097PA1]
          Length = 810

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +    LDF+DLI+ T  +L++      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  + + I +        +    IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +   +  
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|238020268|ref|ZP_04600694.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC 51147]
 gi|237868662|gb|EEP69666.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC 51147]
          Length = 746

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 121/770 (15%), Positives = 224/770 (29%), Gaps = 140/770 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L     S  +             +  +   +   +        
Sbjct: 36  GAGSGKTRVLTTRVAWLLQNQMASVRSILAVTFTNKAAKEMQTRLSAMLPLNLRAMWLGT 95

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L   FL    ++    +     + + +   +K  LK+       +  R     +   
Sbjct: 96  FHGLCHRFLRLHYREAGLPQTFQILDSSDQLSLIKRLLKQLNISEESLAPRVLQGFINAQ 155

Query: 123 TLASLTL---------AKYL---NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             A L            + L    A YE+  ++  V DF +L++ + ++L   +V   +R
Sbjct: 156 KEAGLRAGSLNAPDPHLQRLILCYAEYEKQCQQEGVADFAELMLRSYEVLNANEV---LR 212

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                  NHIL+DE QDT+ +Q+  ++ +  +             +FAVGD+ QSIY F 
Sbjct: 213 THYQNRFNHILVDEFQDTNKLQYAWLKLIAGEQSA----------IFAVGDDDQSIYRFR 262

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +    R     A         I+L  ++RS  +IL   + V        G +  
Sbjct: 263 GANVGNMTDLMREFHIAAP--------IKLERNYRSVGNILAAANAVIQNNSERLGKNL- 313

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                                     + +++   +   + +Y D           A+ I 
Sbjct: 314 --------------------------RTEAESGDKIRYFCAYNDYEE--------AQFIT 339

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
               ++    T              I +L R    + +I            I        
Sbjct: 340 EECRHLQRHGTPLDQ----------IAILYRSNAQSRIIEQQL----FQAAIPYRIYGGL 385

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469
              +   IK  +A  R  ++  DD + + ++  P        +  I      +  ++++ 
Sbjct: 386 RFYERQEIKHALAYLRLAVNPNDDNALLRVINFPPRGIGTRSVENIQAAAAEQGISLWQA 445

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVI 526
                    SK    ++ I             +    IL        + ++      E  
Sbjct: 446 ACGMG-AKASKIAAFVQLIDSFQQQIPHFRLPEILQTILQDSGLYAHYQAQKQASERERT 504

Query: 527 DVLDEFLNFTLRN-----------EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRI 574
           + LDE +N                E N+ S    +++ L        +    A    V++
Sbjct: 505 ENLDELINAAEYFRPEDSPFETQPENNTDSPEFPILAFLSNASLESGETQAGAGQEAVQL 564

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MTVH AKGLE   VFL       F  +                                 
Sbjct: 565 MTVHAAKGLEFDNVFLSGMEEGRFPSEMSL------------------------------ 594

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                +    +E  RL+YV +TRA  +L I        +++    T   +V         
Sbjct: 595 ----AEHGGLQEERRLMYVAITRARKRLYISMAQ----QRQLYGITQTSIVSRFIDEIPG 646

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                L+             S  H  +   + E          +      
Sbjct: 647 ELLHHLSPPKPTGSLKTASASASHWAHPQKQPENECNATSHTPRDYHGYT 696


>gi|238792776|ref|ZP_04636407.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia intermedia ATCC 29909]
 gi|238727884|gb|EEQ19407.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia intermedia ATCC 29909]
          Length = 1202

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 131/976 (13%), Positives = 297/976 (30%), Gaps = 146/976 (14%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
            + I   +  +     +  ++  +L   +G       ++ L    +   I           
Sbjct: 221  QQIVVQIDAVKAQWRAVAHELEALISASGVDKRSYSSRYLPNWLEKVGIWAVQETGDYQL 280

Query: 74   LTQKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              +    +++I+   T++       +   +    ++ + +RD                  
Sbjct: 281  PKELEKFRQSILFEKTKKGAAPQHSVFSAIDSIFEQPLTLRDLI-----------LARAI 329

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              +    ++ K++   L F+DL+   +  L++      +   I       +IDE QDT  
Sbjct: 330  SEIRTSVQQEKRQRAELGFDDLLSKLDAALQQPG-GELLAQSIRTRYPVAMIDEFQDTDP 388

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q+ +  +L          + S   L  +GD KQ+IY+F GA+    +R +       T 
Sbjct: 389  QQYRIFHTLYG--------NQSECGLLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT- 439

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                     L  ++RS+  ++  V+++FS  E      +     +             + 
Sbjct: 440  ---------LETNWRSSFPMVQSVNRLFSSVEVPFLFEQIPFIKVA----------AAEK 480

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSN 365
              ++  +   +  P    W    + +       ++AR+ A  I + +         + + 
Sbjct: 481  NSRLSFEIKGKKQPAISFWLQPGEGVGVSEYQQLMARQCASQIRDWLVDGQKGLAQLVTT 540

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
               R +QA DI +LVR R +  L+      L      SV  ++R  + D    KDL+ L 
Sbjct: 541  AGSRPVQASDITILVRSRAEAALVRDALSAL---AIPSVYLSNRDSVFDTAEAKDLLWLL 597

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
            + +L+ E + +    + + +       +  +       +T+ +    +        + V+
Sbjct: 598  QAVLAPEQERALRSAMATGMLGLDAQMLDALNHDERAWDTLVDEFDGYRQHWQR--RGVL 655

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQN 542
              + E++              +L    G ++            L E L      L +E  
Sbjct: 656  PMLREIMAQRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSEHA 703

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                L + I++        +    ++ + V+++T+H +KGLE P+V+L   G+       
Sbjct: 704  LIRWLAQQIAQPNHQSDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVGNFRQQQDV 763

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
            +                          N   +     ++    E  RLLYV +TRA    
Sbjct: 764  LYHDRHSFEAL-------------LDLNADEESQSLAEEERLAEDLRLLYVALTRAVYHC 810

Query: 663  ------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDER-----VKKIKLTNSINKDEWIA 711
                  +I        E   +      +V      D +     + ++  ++  +    +A
Sbjct: 811  SIGIAPLIKGGRKKQGESDMHLSALGYLVQHGQAGDAQYLADKLAELTASSGGDIAVLLA 870

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK--------------NDINEPYIL 757
                    +  P    E   +  + Q       +                         L
Sbjct: 871  ERPDATAWQPRPEILPELAARQFNRQMHDFWRVTSYSGLQQHGSKSQALNIPLQELLPRL 930

Query: 758  NPSTIDTKG--KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
            +   +  +        +  +  +    G  +H LL+ +      +          +    
Sbjct: 931  DSDAVGEQAPIAAADLTPHTFPRGAAPGTFLHDLLEPLDFSQPIEPDWLAEQLQQQGFGE 990

Query: 816  WPAKEYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSVSGKINCPKK------------ 860
              +      L  I  + L +    +         +E+     I+   +            
Sbjct: 991  QWSPMLYQWLSDIMHVPLNDTGVTLAGLTPDSKQAELQFYLPIDTLLRANQLDALIKHYD 1050

Query: 861  --------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY-------- 898
                            ++ G ID +   Q   ++ +YK++        +           
Sbjct: 1051 PLSRQCPVLDFQQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTAQLMAQAMAE 1110

Query: 899  -THIAQLSIYEKILKD 913
              +  Q  +Y   L  
Sbjct: 1111 HRYDLQYQLYTLALHR 1126


>gi|27364389|ref|NP_759917.1| DNA-dependent helicase II [Vibrio vulnificus CMCP6]
 gi|37681375|ref|NP_935984.1| DNA-dependent helicase II [Vibrio vulnificus YJ016]
 gi|27360508|gb|AAO09444.1| DNA helicase II [Vibrio vulnificus CMCP6]
 gi|37200127|dbj|BAC95955.1| DNA helicase II [Vibrio vulnificus YJ016]
          Length = 724

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 182/549 (33%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL++     +IR        HIL+DE QDT+ I
Sbjct: 173 QLYTAYQEACDRAGLVDFAEILLRAHELLREN---KFIREHYQARFKHILVDEFQDTNNI 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +            
Sbjct: 230 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 274 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I        +         
Sbjct: 311 -------TDGVEGEPISIYSAYNELDE-------ARFAVNKIKEWQDKGGVL-------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R I ++
Sbjct: 349 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLIANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T++E                      
Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETVRFAARDRGCTLWEASIALIEEKVLTGRAAGALSRF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ I  L   +     H     ++ +      +    G +    I+ L+E +  T + E+
Sbjct: 463 IELITALEDDSFEMPLHIQTDHVIKSSGLYTMYEQEKGEKSKARIENLEELVTATRQFEK 522

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 523 PEEAEEMSLLTAFLTHAALEAGEGQADDFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 609 QKLYITYAE 617


>gi|313637420|gb|EFS02884.1| ATP-dependent DNA helicase PcrA [Listeria seeligeri FSL S4-171]
          Length = 544

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 181/562 (32%), Gaps = 115/562 (20%)

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L   F     
Sbjct: 3   FDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKLLASRF----- 54

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                + L  VGD  QSIY + GA+   ++  ++               I L  ++RST 
Sbjct: 55  -----KNLCVVGDSDQSIYGWRGADISNIMSFEKDYPN--------AKTILLEENYRSTK 101

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL   ++V     N +  +                     LW        S    ++  
Sbjct: 102 RILEAANRVIENNGNRKPKN---------------------LW-------TSNAEGKKIF 133

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
           +        +       A  +   I   +   +             D  +L R    + +
Sbjct: 134 YHKALTEKEE-------AAYVVMKIQEEVNNSSR---------PLSDFAILYRTNAQSRV 177

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
           +            ++          D   IKD++A  R I + EDD+S   ++  P    
Sbjct: 178 MEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINVPKRGV 233

Query: 449 SEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHD 502
               + K+         +++E + +                    +     +  F S  +
Sbjct: 234 GPGTLEKLNNVATAYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDFLSVTE 293

Query: 503 FFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQN-SYSSLQELISELEQYP 558
               IL     R    +    E     + +DEFL+ T   E+     +L   +++L    
Sbjct: 294 LVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENEDKTLIAFLTDLALVA 353

Query: 559 PTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
              K           V +MT+H+AKGLE PVVFLV     +F H                
Sbjct: 354 DVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS--------------- 398

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                  ++   EE  RL YVG+TRA ++L +    +     + 
Sbjct: 399 -------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRP 439

Query: 677 NQRTWYDMVYDSFHNDERVKKI 698
           +       + +   +   +   
Sbjct: 440 SSNQESRFIGEIPRDLLELANE 461


>gi|88608144|ref|YP_506352.1| ATP-dependent DNA helicase UvrD [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600313|gb|ABD45781.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia sennetsu
           str. Miyayama]
          Length = 907

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 174/848 (20%), Positives = 333/848 (39%), Gaps = 92/848 (10%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE-E 139
           +K        K    L   L     ++ KI ++     + +    S+ +        E  
Sbjct: 151 KKTAEKTTERKLHETLASLLSNFHLDYRKIIEKLKNDPLEQLATESIDILSAFTQFLEIN 210

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
                  +    +I    ++        W  Y+I  +I+HIL+DE QD S+ QW +I +L
Sbjct: 211 QNISKHYISHNGIIETAIEM------EIWNVYEIAAKIDHILLDEAQDNSIKQWYIISNL 264

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             DF + +  +   +++F VGD KQSIY F GA P+  L    I ++R  +   K   ++
Sbjct: 265 CRDFLIDETHN---KSIFVVGDYKQSIYGFQGASPEMYLAFYDILKQR--DPQNKLVQVK 319

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
              S+RS+  IL  VD VF   +    L + S+  IRH +SR    G +++   +     
Sbjct: 320 TAKSYRSSTAILQFVDSVFENIQ----LCKTSSEKIRHTTSRTEAPGYIEVIPLL----- 370

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                             +  +   LA  I  TI + +         K R ++  DIL+L
Sbjct: 371 ---------------QYGEVDAELQLAISIRETIQSWLKIGRTL-KAKNRPVKGSDILIL 414

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           V  R +   +            I V    +F + ++   + L+ LG+F++ + DD + + 
Sbjct: 415 VAHRTN---LVDHIYTQLTAINIPVNFTGKFTVKNNPLFELLINLGKFLIYKHDDEALIT 471

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +LKSP+F +S   + K+  ++ +     +    +A   + ++               + +
Sbjct: 472 LLKSPIFAWSHSALLKLKAEKKKEWLFEQICATYAGKVLKRWLEF------------YGT 519

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             D ++ +L A+         +G+E    +D FL+ TL +E             +     
Sbjct: 520 TFDIYSQVLDARTVTT-LAKYYGSETPYYIDIFLDNTLEHECIHD------FIYIFSGED 572

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              +  S N N V I TVH +KG +SP+VF+VD+     +               + G P
Sbjct: 573 ATLKIKSKNENGVTISTVHGSKGTQSPIVFIVDSNYVPQNRDIF--------FFTEDGTP 624

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
           +   ++  R  +V ++    K+S + E+ RLLYV +TRA D+L I      + +    + 
Sbjct: 625 LLSSETHVR--VVQEMRDVKKESIRYEHLRLLYVALTRAEDELYIMGIGKQAKKNSWYEA 682

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
               +V     N +                   +      EN  L RE    + M   + 
Sbjct: 683 CSNGIVKIGSQNQDGAYYYTNDLLYP---IKIKQKVDKSDENPSLHRERDSNRRMKNTQE 739

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            +   S + N    PY  + +  +     ++  +        RG +IHK+L+ I  + + 
Sbjct: 740 LQNKESDLANSYEFPYKRDETFDNGIIDDDVTKVSEKTFQIIRGKLIHKILEYISKVEKA 799

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
             + ++  +  + +     ++   +  ++   LE          D  +EV V        
Sbjct: 800 --EKWMNLFLEEYSPELSNEQKNEIKRTVLLFLEKNH-----RADGKNEVEVYF------ 846

Query: 860 KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
              ++  R+D +   +  I I +YKT      ++         Q+  Y++ ++  YP K+
Sbjct: 847 DGKLL--RMDNVKFEKDTITIRDYKTGKDKSVDLA-----IEKQMHRYKEAMQAIYPEKN 899

Query: 920 LVCLLIYV 927
           ++  +I++
Sbjct: 900 VITEIIWL 907


>gi|313812190|gb|EFS49904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA1]
          Length = 810

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 193/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +    LDF+DLI+ T  +L++      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +           I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 PR--------ARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  + + I +        +    IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +   +  
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|257054747|ref|YP_003132579.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017]
 gi|256584619|gb|ACU95752.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017]
          Length = 1090

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 142/1040 (13%), Positives = 292/1040 (28%), Gaps = 156/1040 (15%)

Query: 2    KNRFGLSLNE-SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            + R  ++  E +    +     L       +       + +   +     + +       
Sbjct: 111  RRRLAVASGEPTVLTYHAYAGRLLAEYGLRLPVQPGARILSETASWQLAYRVVSSWDADL 170

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR-FNTYKM 119
              ++    ++   L       +++++ E  ++       L ++       R +       
Sbjct: 171  DTDKAPMTVTEHLLALAGELGEHLVSPERLREYTTWFCDLVENAPRAKGQRAKPKKELLD 230

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
              +          L   YE  K+    LDF D +     L + +     +     +    
Sbjct: 231  IVAAQRLRLQLLPLVEAYEHRKRAEGALDFADQMSLAARLAETQPD---VVASERERYGA 287

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +L+DE QDT   Q  ++RSL            +P  + AVGD  Q+IY + GA    + R
Sbjct: 288  VLLDEYQDTGHAQRVLLRSLFGG--------PAPMPVTAVGDPAQAIYGWRGASAANLPR 339

Query: 240  EKRINQKRATNAGQ--KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                  +     GQ        +  SFR+  ++LT+ +   + P  A+GL       +R 
Sbjct: 340  FTTDFPRLDERTGQPVPAREYGMLTSFRNPPEVLTLANS-IAEPLRAKGL---GVQELRA 395

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            R+        V L   VVS+ +   +     W +  D+     +A               
Sbjct: 396  RADAGPADIRVALLPDVVSEREWVADQIATRWFAERDATGTAPTA--------------- 440

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                                VLVR+R D   +    R       + V       L D   
Sbjct: 441  -------------------AVLVRRRVDMAPMAAALRA----RGLPVEVVGLGGLLDEPE 477

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--------- 468
            + DL+A  R +       + V +L    +     D+  +  +  E     +         
Sbjct: 478  VADLVATLRVLAEPLSGTAAVRLLTGARWRLGAADLGALWRRAGELSAADDTVVAERAEQ 537

Query: 469  -----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                          +++  G ++ + + + +  L          +    +        + 
Sbjct: 538  AGLVDAIDDPGEPSRYSEEGYARIRRLSRELEALRRR-MDQPLPELVADVERTMLLDVEA 596

Query: 518  ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQY----PPTIKRAHSANHNEV 572
            ++R G      LD F +      E +  ++L   +  L                   + V
Sbjct: 597  LARPGAVGRAHLDAFADVVNDYAENSPTATLLSFVDYLAAATRAEDGLEPGEVEVVPDRV 656

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI-------MPSLNDDPGIPIWIPQS 625
            +++T H+AKGLE  +V +     + F ++      +            D   +P    + 
Sbjct: 657  QVLTAHSAKGLEWRIVAVPHLVDRTFPNERKTSSWLKTVTELPAALRGDAQDLPQLALRG 716

Query: 626  KSRNNIVSDLIKHLKK----STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                  V + +   ++       EE  RL YV +TR+   L++  +          +   
Sbjct: 717  GEDRKQVEEALAEHEEGFRRRHAEEERRLCYVALTRSEHCLVVSGYRWGDANATEPKAPS 776

Query: 682  YDMVYDSFHNDER------------VKKIKLTNSINKDEWIAYEWSTHHPENTPLER--- 726
              +   +    E               +  L     + EW         P      R   
Sbjct: 777  PFLTEVAERVREDPTVGVVEHWCSEPGENPLAGVSRETEWPVDPLGARRPAVDEGARLVL 836

Query: 727  -------------------------------EETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                                           +  + +    ++   ++  P K  +++  
Sbjct: 837  EALEELESGADAETDEEITEEDDPDNWVSDTDVLLAERARAREPQVEIELPGKLSVSQLV 896

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
             L     D   +         N    RG   H  L+  F   +    + +      +   
Sbjct: 897  DLAGEPEDLARRLRRPLPFPPNAYARRGTEFHGWLERRFASDKLFDLDELPGAADADVGD 956

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS- 874
                + + L  +  R   +P               V    +     I + GRID +    
Sbjct: 957  ADPADLEALKEAFER---SPWAQ-------RVPHDVEVPFSTAIDGITVRGRIDAVFADP 1006

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKV 932
                 + ++KT                 QL+ Y     +    P + +     YV   + 
Sbjct: 1007 DGGWTVVDWKTGALPD---AERMPALAVQLAAYRLAWANLSGAPLEKVRAAFHYVRANRT 1063

Query: 933  FIIPQNKLNKAFAEISTKIP 952
                          +   +P
Sbjct: 1064 VRPVDLADADGLRALLRTVP 1083


>gi|226307919|ref|YP_002767879.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4]
 gi|226187036|dbj|BAH35140.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4]
          Length = 830

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 111/742 (14%), Positives = 216/742 (29%), Gaps = 152/742 (20%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF--L 74
            + + P     ++  NK  +   E     +  +A  +  ++            ++    L
Sbjct: 74  ERGVTPGQILAITFTNKAAAEMRERVAALVGPRANAMWVSTFHSSCVRILRAQAALLPGL 133

Query: 75  TQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKIR----------DRFNTYKMFKST 123
              F+   +  ++ +    S DL+   K+     +                      +  
Sbjct: 134 NSNFSIYDSDDSRRLLTMISKDLELDTKRFSARLLATHISNLKNELVGPEEAVVAADQDP 193

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   +  HY++  +    LDF+DLI  T  LL+       I     +   H+L+D
Sbjct: 194 AELPRLIAKVYGHYQQRLRAANALDFDDLIGETVALLQ---AFPQIAEYYRRRFRHVLVD 250

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q+ ++R L        +   +P  L  VGD  QSIY+F GA  + +   +R 
Sbjct: 251 EYQDTNHAQYMLVRELVGGAGE-SDHAVAPAELCVVGDADQSIYAFRGATIRNIEEFERD 309

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         I L  ++RST +IL+  + V S     +                  
Sbjct: 310 YP--------DARTILLEQNYRSTQNILSAANSVISKNTGRREKR--------------- 346

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 LW             +        +   +       A  +A  I  ++      
Sbjct: 347 ------LW-------TDSGEGELIVGYVADNEHDE-------ASFVASEIDRLVDQGET- 385

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +  DI V  R    +  +  +         +           +   ++D++A
Sbjct: 386 --------KFADIAVFYRTNNSSRALEEIF----IRLGVPYKVVGGVRFYERKEVRDIVA 433

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK---------FA 474
             R + +++D +S   +L +P     +     +          +    +           
Sbjct: 434 YLRVLANEDDTVSLRRILNTPRRGIGDRAEACVAVHSEHRNISFAAALRDGAEGKVALLN 493

Query: 475 NCGISKFQHVIKYIHELIHI-----AQFCSPHDF------FTLILGAKKGRQQFISRFGN 523
                     ++ +  L  +     A    P +          +L     R +  +    
Sbjct: 494 TRSQKAIASFLEMMDGLRALLPTPAADEDEPFELGDIGEVAEAVLERTGYRAELAASSDP 553

Query: 524 E---VIDVLDEFLNFTLRNE--------------------QNSYSSLQELISELEQYPPT 560
           +    +D L+E ++                          +        L + LE+    
Sbjct: 554 QDGARLDNLNELVSVAREFSSDARNAAGLIDPDDEETAAMREGEPDPGSLAAFLERVSLV 613

Query: 561 IKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                   ++   V +MT+HTAKGLE PVVF+       F H                  
Sbjct: 614 ADADQLPDSDDGVVTMMTLHTAKGLEFPVVFVTGWEDGQFPHMRALGDP----------- 662

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                  +   E  RL YVG+TRA  +L + +    S   +  Q
Sbjct: 663 -----------------------AELSEERRLAYVGITRARQRLYLTRAIMRSAWGQPIQ 699

Query: 679 RTWYDMVYDSFHNDERVKKIKL 700
                 + +   +    ++   
Sbjct: 700 NPASRFIQEIPEDLINWRREDP 721


>gi|120610596|ref|YP_970274.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1]
 gi|120589060|gb|ABM32500.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1]
          Length = 818

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 97/588 (16%), Positives = 187/588 (31%), Gaps = 144/588 (24%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YEE  ++  V+DF +L++ + +LL+  D    IR    +   HIL+DE QDT+ +
Sbjct: 196 ELYQLYEEQCQREGVVDFGELMLRSYELLRDND---PIRAHYQRRFQHILVDEFQDTNKL 252

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ +  D         +  ++ AVGD+ QSIY+F GA    +    R    R    
Sbjct: 253 QYAWLKQIAGDVV--DGRLVTHGSVLAVGDDDQSIYAFRGARVGNMQDFVREFDVR---- 306

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  ++RS ++IL   + + S      G +                       
Sbjct: 307 ----HQIKLEQNYRSYSNILDSANALISHNSRRLGKNL---------------------- 340

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +           + +  D           A+ +   I  +   D           
Sbjct: 341 -----RTTQGPGEPVRVYEAPTDLAE--------AQWMVDEIRQLARND---------GF 378

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + ++I VL R    + +I         +  +           +   IK  +A  R + + 
Sbjct: 379 ERREIAVLYRSNAQSRVIESAL----FNAAVPYRVYGGLRFFERAEIKHALAYLRLLENP 434

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD SF+ ++  P        +  +    R    ++++ +        +     +  +  
Sbjct: 435 HDDTSFMRVVNFPPRGIGARTVEVLQDAARQAGCSLHDAVSAVPGKAGANLGAFVAMVDV 494

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539
           +    Q  +       +L +    + + +   G + ++ LDE +N               
Sbjct: 495 MREQTQGQTLRGIIGQMLESSGLVEHYRAEKEGADRLENLDELINAAESFVTQEGFGRDA 554

Query: 540 ------------------------------------EQNSYSSLQELISELEQYPPTI-K 562
                                               + ++  +L  L + L         
Sbjct: 555 VALPVDEHGASLRQSPASQGIDPSLPVVDEPLPGGVDADTGETLSPLAAFLTHAALEAGD 614

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
               A  + V++MTVH +KGLE   VF+      +F H++                    
Sbjct: 615 NQAQAGQDAVQLMTVHASKGLEFDAVFIGGMEEGLFPHENS------------------- 655

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                             +   EE  RL+YV +TRA  +L +      
Sbjct: 656 ---------------MSDRDGLEEERRLMYVAITRARKRLYLSHSQTR 688


>gi|326318047|ref|YP_004235719.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374883|gb|ADX47152.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 818

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 97/588 (16%), Positives = 187/588 (31%), Gaps = 144/588 (24%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YEE  ++  V+DF +L++ + +LL+  D    IR    +   HIL+DE QDT+ +
Sbjct: 196 ELYQLYEEQCQREGVVDFGELMLRSYELLRDND---PIRAHYQRRFQHILVDEFQDTNKL 252

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ +  D         +  ++ AVGD+ QSIY+F GA    +    R    R    
Sbjct: 253 QYAWLKQIAGDMV--DGRLVTHGSVLAVGDDDQSIYAFRGARVGNMQDFVREFDVR---- 306

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  ++RS ++IL   + + S      G +                       
Sbjct: 307 ----HQIKLEQNYRSYSNILDSANALISHNSRRLGKNL---------------------- 340

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +           + +  D           A+ +   I  +   D           
Sbjct: 341 -----RTTQGPGEPVRVYEAPTDLAE--------AQWMVDEIRQLARND---------GF 378

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + ++I VL R    + +I         +  +           +   IK  +A  R + + 
Sbjct: 379 ERREIAVLYRSNAQSRVIESAL----FNAAVPYRVYGGLRFFERAEIKHALAYLRLLENP 434

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD SF+ ++  P        +  +    R    ++++ +        +     +  +  
Sbjct: 435 HDDTSFMRVVNFPPRGIGARTVEVLQDAARQAGCSLHDAVSAVPGKAGANLGAFVAMVDV 494

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539
           +    Q  +       +L +    + + +   G + ++ LDE +N               
Sbjct: 495 MREQTQGQTLRGIIGQMLESSGLVEHYRAEKEGADRLENLDELINAAESFVTQEGFGRDA 554

Query: 540 ------------------------------------EQNSYSSLQELISELEQYPPTI-K 562
                                               + ++  +L  L + L         
Sbjct: 555 VALPVDEHGASLRQSPASQGIDPSLPVVDEPLPVGVDADTGETLSPLAAFLTHAALEAGD 614

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
               A  + V++MTVH +KGLE   VF+      +F H++                    
Sbjct: 615 NQAQAGQDAVQLMTVHASKGLEFDAVFIGGMEEGLFPHENS------------------- 655

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                             +   EE  RL+YV +TRA  +L +      
Sbjct: 656 ---------------MSDRDGLEEERRLMYVAITRARKRLYLSHSQTR 688


>gi|261391767|emb|CAX49221.1| DNA helicase II [Neisseria meningitidis 8013]
          Length = 735

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 467 QVGQMPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|254428788|ref|ZP_05042495.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881]
 gi|196194957|gb|EDX89916.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881]
          Length = 757

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 122/740 (16%), Positives = 234/740 (31%), Gaps = 132/740 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   Q S                +  + + L   S        
Sbjct: 68  GAGSGKTRVLVHRIAWQIATEQASPFGILAVTFTNKAAAEMRGRIEQLLDMSADGMWVGT 127

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINKK-SPDLKEKLKKSQDE-----FIKI 110
           F         +      L Q F          + K+ S +L    ++             
Sbjct: 128 FHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSKELGLDEQRWPARQATWFINGQ 187

Query: 111 RDRFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +D     +          L  + +   YE+A ++  ++DF ++++   +L +  D    +
Sbjct: 188 KDEGLRARHMDVGGDLFALTMQKIYFAYEDACERGGLVDFNEMLLRVLELFRDND---NL 244

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R    +   HIL+DE QDT+ IQ+  +R L ++             +  VGD+ QSIY +
Sbjct: 245 RGHYQRRFRHILVDEFQDTNSIQYAWLRLLADE----------NNAVTIVGDDDQSIYGW 294

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +  R               I L  ++RST  IL   + V     +  G   
Sbjct: 295 RGAKIENIHKFSRDFP--------DTRTIRLEQNYRSTGTILKAANAVIGNNSDRLGK-- 344

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW           +       S F+ + +       AR I
Sbjct: 345 -------------------ELW-------TEGGDGDPIRLYSGFNEVDE-------ARFI 371

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  +  +    T            +++ VL R    + ++            I       
Sbjct: 372 AGRMDKLFQEGTA----------RREMAVLYRSNAQSRVLEEAF----LQAGIPYRIYGG 417

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               + + IK+ +A  R +  +  D +F  ++ +P        +  +    R  + +++E
Sbjct: 418 QRFFERVEIKNALAYLRLLSHRHADAAFERVVNTPTRGIGNKTLETLREVARQRSVSLWE 477

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFIS 519
             Q        +   I+     +  I +L    +  S  +    ++ A    +   +   
Sbjct: 478 AAQAVVGEQLLSARAINALAVFLNLIAQLEQQCEGLSLAETTEHVIEASGLLEFHGKEKG 537

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
             G + ++ L E L+ T         S L  L + L+       +    A+ + V++MT+
Sbjct: 538 EKGQQRLENLRELLSATREFGDEDEDSELDSLTAFLDHAALESGEGQADAHEDAVQMMTL 597

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE PVVF+      +F HK   +                                
Sbjct: 598 HSAKGLEFPVVFITGMEEGLFPHKMSSEEPG----------------------------- 628

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                   E  RL YVG+TRA  +L +    +       N       + +         +
Sbjct: 629 -----RLAEERRLCYVGLTRAMRELYLTHAESRRLYGNENYNPPSRFLREIPAETLEEIR 683

Query: 698 IKLTNSINKDEWIAYEWSTH 717
            +   S            T 
Sbjct: 684 ARAGFSRPMGGAARPIRETE 703


>gi|163803195|ref|ZP_02197077.1| DNA helicase II [Vibrio sp. AND4]
 gi|159173016|gb|EDP57850.1| DNA helicase II [Vibrio sp. AND4]
          Length = 724

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 108/693 (15%), Positives = 207/693 (29%), Gaps = 136/693 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------------ 53
           G    ++  L+++  W +   Q S  +             +  + + L            
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTNKAAAEMRGRIEELMMGSTGGMWNGT 90

Query: 54  ------QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
                 +         +            +    K +I  +          ++    +  
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAQNLDDKQWPARQVAWWINAK 150

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
               +      +             L   Y+EA  +  ++DF ++++  ++LL+      
Sbjct: 151 KD--EGLRPSHIDAYHDPVTKTYLQLYTAYQEACDRAGLVDFAEILLRAHELLRDN---K 205

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
           ++R        HIL+DE QDT+ IQ+  +R +                +  VGD+ QSIY
Sbjct: 206 FVREHYQARFKHILVDEFQDTNNIQYAWLRMMAG----------PECHVMIVGDDDQSIY 255

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + + +                + I L  ++RST  IL   + + +      G 
Sbjct: 256 GWRGAKVENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNALIANNTERMGK 307

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                +LW             +  S  S ++ L +       AR
Sbjct: 308 ---------------------ELW-------TDGVVGEPISIYSAYNELDE-------AR 332

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
                I                     D  +L R    + ++            +     
Sbjct: 333 FAVNKIKEWQDKGGAL----------NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIY 378

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                 +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+
Sbjct: 379 GGMRFFERQEIKDALSYMRLIANRNDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTM 438

Query: 467 YEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E           A          I+ +  L         H     ++        +   
Sbjct: 439 WEASVAMLDEKVLAGRAAGALSRFIELVTALEDDTMEMPLHHQTDHVIKYSGLFSMYEQE 498

Query: 521 FGNE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575
            G +    I+ L+E +  T + E+      +  L + L        +       + V++M
Sbjct: 499 KGEKSKARIENLEELVTATRQFEKPEEADDMSLLTAFLTHAALEAGEGQADEFEDAVQLM 558

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P+VF+V     +F  +                                  
Sbjct: 559 TLHSAKGLEFPLVFMVGVEEGMFPSQMS-------------------------------- 586

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
               +    EE  RL YVGMTRA  +L I    
Sbjct: 587 --AEEAGRLEEERRLCYVGMTRAMQKLYIIYAE 617


>gi|163748667|ref|ZP_02155920.1| DNA helicase II [Shewanella benthica KT99]
 gi|161331777|gb|EDQ02581.1| DNA helicase II [Shewanella benthica KT99]
          Length = 721

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 101/595 (16%), Positives = 194/595 (32%), Gaps = 120/595 (20%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +R +      F      L     +   Y+E+  ++ ++DF ++++  ++L   +     +
Sbjct: 154 LRPKHIDAAGFPIEQNLLQ----IYQVYQESCDRSGLVDFAEILLRAHELWLNKPH---V 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    +IL+DE QDT+ IQ+  IR L  +             +  VGD+ QSIY +
Sbjct: 207 LKHYQDRFKNILVDEFQDTNAIQYAWIRVLAGE----------GANVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +      K         + I L  ++RST  IL   + + +   +  G   
Sbjct: 257 RGAQVENLHKFLVDFPK--------ATTIRLEQNYRSTGHILKASNALIANNPDRLGKK- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW           + +  S    F+ + +       AR I
Sbjct: 308 --------------------LW-------TQDKDGEPISIYCAFNEMDE-------ARFI 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              IS+                      +L R    + ++            ++      
Sbjct: 334 VGRISDWHDMGGGL----------SGCAILYRSNAQSRVLEEAL----LHKGLAYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD M+  R I +++DD +F  ++ +P        +  +    R +  T+++
Sbjct: 380 LRFFERQEIKDAMSYLRLINNKDDDAAFERVVNTPARGIGGRTLDILRATARQQQLTLWQ 439

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              +       +    +  +  +  I E+    Q  + H     I+     +  + +  G
Sbjct: 440 TCLRAIEEKLLSGRAANAVRGFMDLIVEMQQDTQEMTLHRTTDHIIAKSGLKAMYEAEKG 499

Query: 523 NEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTV 577
            +     + LDE +              + EL + L             A  + V++MT+
Sbjct: 500 EKARSRVENLDELVTAARTFIMPEEIEDMGELSAFLSHAALEAGEGQADAFTDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE PVVF+      +F  +                                    
Sbjct: 560 HSAKGLEFPVVFMSGVEEGLFPSQMAMDEG------------------------------ 589

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                  +E  RL YVGMTRA ++L I          + N       + +     
Sbjct: 590 ----DRLDEERRLCYVGMTRAMEKLYITHAETRRIYGRENISRPSRFIKEIPTEH 640


>gi|153834693|ref|ZP_01987360.1| DNA helicase II [Vibrio harveyi HY01]
 gi|148868889|gb|EDL67949.1| DNA helicase II [Vibrio harveyi HY01]
          Length = 723

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 179/549 (32%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+      ++R        HIL+DE QDT+ I
Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRDN---KFVREHYQARFKHILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +            
Sbjct: 229 QYAWLRMMAG----------PECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I                  
Sbjct: 310 -------TDGVVGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R I ++
Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLIANR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T++E           A          
Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTMWEASVAMLDEKVLAGRAAGALSRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ +  L         H     ++        +    G +    I+ L+E +  T + E+
Sbjct: 462 IELVTALEDDTIEMPLHHQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 522 PEEAEDMSLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 608 QKLYITYAE 616


>gi|28493047|ref|NP_787208.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
 gi|28476087|gb|AAO44177.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
          Length = 743

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 103/588 (17%), Positives = 194/588 (32%), Gaps = 114/588 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               ++   Y+E  K+    DF+DLI  T  LL+K      I         ++L+DE QD
Sbjct: 181 QFILHVFRRYQEILKEANAFDFDDLISETVFLLQKSPE---ISAMYRNRWKYLLVDEYQD 237

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +I  LT+      +       L AVGD  QSIY+F GA+   ++  +      
Sbjct: 238 TNHAQYRLILELTKGDKSDMS-------LTAVGDSDQSIYAFRGADIANIVNFENDFP-- 288

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RS  +IL   + + S  +N +  +                   
Sbjct: 289 ------DCHTILLEQNYRSCQNILLAANALISNNQNRKDKN------------------- 323

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW       +     +  ++ +        SSA    R +A  + +++          
Sbjct: 324 --LWS------ELGAGEKVIAYCA--------SSAEEEGRFVADRVRHLVDQGESL---- 363

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI V  R    + +I            I           +   IKD++A    
Sbjct: 364 ------SDIAVFYRSNTQSRVIEESL----IRQSIPYRVVGGTKFYERAEIKDILAYLTV 413

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF-ANCGISKFQHVI 485
           I++ +D L+   +L  P          ++         T+ + + +          +  +
Sbjct: 414 IVNPDDTLALRRILNVPKRGVGTVSENRLVEFASARGITLMQALSRIDEINIQPSAKSAL 473

Query: 486 KYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNE 540
           + +  L++         ++    +L A     +F +    +       + +F++      
Sbjct: 474 RDLFYLLNRFAGSSMPANELLDDLLKATDLLSRFNNTDDPQNEARKINIGDFVDSVEDFA 533

Query: 541 QNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +    L + ++ +     T          ++ +MT+H AKGLE   VFL      +  
Sbjct: 534 KENPGGTLSDFMTNIALM--TSYDQSDDAPGQITLMTLHMAKGLEFDFVFLTGLEEGILP 591

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+   K                                  +K+  EE  RL YVGMTRA 
Sbjct: 592 HEMSLK----------------------------------EKNGIEEERRLAYVGMTRAK 617

Query: 660 DQLII---CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             L +         ++  +   R W ++         R    + T  +
Sbjct: 618 KVLHLSFSSYRKRYTDGVRLPSRFWDEIPQHLLRWHSRFTHKRFTGPL 665


>gi|300214971|gb|ADJ79387.1| ATP-dependent DNA helicase [Lactobacillus salivarius CECT 5713]
          Length = 744

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 119/807 (14%), Positives = 243/807 (30%), Gaps = 133/807 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L            
Sbjct: 30  GAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERVNNLMGEGAEDIWVST 89

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L +        ++      +++   +K+ L     +  K   R     +  +
Sbjct: 90  FHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQVLNDLNIDTKKYDPRAILSVISNA 149

Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L               +       Y+     N  +DF+DLI+ T  L  +   +  
Sbjct: 150 KNDLLDPKDYAQQANGPFEEIVSKAYFEYQNQLANNQAMDFDDLIMQTIRLFNESPET-- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 ++ ++I +DE QDT+  Q+E++  L   +          R L  VGD  QSIY 
Sbjct: 208 -LEFYQRKFHYIHVDEYQDTNEAQYELVNKLARKY----------RNLCVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + ++  +              ++I+L  ++RST +IL   + V     N +  +
Sbjct: 257 WRGANMENIMNFEEDYP--------DATVIKLEQNYRSTKNILAAANNVIENNVNRKDKT 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              +  +    ++  +       A  
Sbjct: 309 ---------------------LW-------TDNKQGDKIHYYRANNANEE-------AYY 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   I  +              D  +L R    + +I            I      
Sbjct: 334 VVKKIQEQIRNNGR---------HYGDFAILYRTNAQSRIIEETF----VKTNIPYKLVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I D +A  R + +  D +SF  ++  P  +     + K+    +    ++ 
Sbjct: 381 AHKFYDRKEIMDTLAYLRLVTNPADSMSFERIVNEPKRSIGSVTVGKLRTFSQIHGMSML 440

Query: 468 EYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  +  A         ++ +   + I +L    +  +  +    IL     +        
Sbjct: 441 EASKSAALAGVSAKASNELEKFAEMIEQLHEYQKAHNVTEVTERILDVTGYKANLQREDT 500

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQE---LISELEQYPPTIKRAH-SANHNEVRIM 575
            E    ++ L+EFL  T + +Q+     +E    +  L        +       +EV +M
Sbjct: 501 LENRNRLENLEEFLTVTKQFDQDWEPEDEESDPFVDFLADLALVSDQDSVEEEPDEVTLM 560

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE PVVFL+     +F                                     
Sbjct: 561 TLHAAKGLEFPVVFLMGLEEGIFPLS---------------------------------- 586

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
              + ++  EE  RL YVG+TRA ++L +    +     KS        + +      + 
Sbjct: 587 RAVMDENELEEERRLAYVGITRAEEELYLTNSISRMLYGKSQNNPASRFIEEIDEELIQS 646

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
               + ++    +           +        T+++  +     +      K       
Sbjct: 647 DNQTVASTTLTSKRTRSREVPFSKKPKYRMPAGTVERPKETGADKQSWNIGDKISHKAWG 706

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNR 782
                 +   G+     +  + +   R
Sbjct: 707 TGTIVKVSGDGEDTELDIAFEGKGIKR 733


>gi|298524440|ref|ZP_07011849.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|298494234|gb|EFI29528.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A]
          Length = 695

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 108/684 (15%), Positives = 190/684 (27%), Gaps = 136/684 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +      +              +            + L         ++   
Sbjct: 79  AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + +          +    
Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L        N    P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +     +                      
Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +  +  +         I           +   I+D++A  R 
Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478
           + +  D +S   +L +P     +     +     +      + +   A            
Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 ++   EL          +    +L     R++  +    +    +D L+E ++ 
Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542

Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581
                           +         L   LE+            H    V +MT+HTAK
Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE PVVF+      +F H                                         
Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPT--------------------------------- 629

Query: 642 STQEEYNRLLYVGMTRASDQLIIC 665
               E  RL YVG+TRA  +L + 
Sbjct: 630 -ELSEERRLAYVGITRARQRLYVS 652


>gi|311896487|dbj|BAJ28895.1| putative ATP-dependent DNA helicase PcrA [Kitasatospora setae
           KM-6054]
          Length = 885

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 122/731 (16%), Positives = 222/731 (30%), Gaps = 151/731 (20%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P      VS  +      +      +      +  +       +  
Sbjct: 161 AAGEMRERVEALVGPRAKAMWVSTFHSACVRILRREAKQL-----GMNSSFSIYDSADSQ 215

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +    K  +LK +L               TY    S    
Sbjct: 216 RLMALVCRDLDLDP-KQFPPKSFTSKISNLKNELIDE-----------ETYADQASNPTE 263

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             LA+     Y+   ++   LDF+D+I+ T +LL+       +     +   HIL+DE Q
Sbjct: 264 KKLAEAYF-LYQRRLREANALDFDDIIMATVNLLQAFPA---VAEHYRRRFRHILVDEYQ 319

Query: 187 DTSLIQWEVIRSLTE----------------DFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
           DT+  Q+ ++R L+                 +    +     P  L  VGD  QSIY+F 
Sbjct: 320 DTNHAQYTLVRELSGGSAGQAPRMTADGEYVNPAEAQLAQLPPAELCVVGDADQSIYAFR 379

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + +L+ +              + I L  ++RST  ILT  + V     N +  +  
Sbjct: 380 GATIRNILQFEEDYPN--------ATTILLEQNYRSTQTILTAANSVIERNTNRRKKN-- 429

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW        +    +Q       D   +       A+ IA
Sbjct: 430 -------------------LW-------TAGDQGEQVVGYVADDEHGE-------AQFIA 456

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +               +  D+ +  R    + +   +         +        
Sbjct: 457 EEIDRLTDGGH---------ARPGDVAIFYRTNAQSRVFEEVF----IRVGLPYKVVGGV 503

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
              +   +KD++A  R + + ED +    +L  P     E     I          +   
Sbjct: 504 RFYERKEVKDVLAYLRVLSNPEDTVPLRRILNVPKRGIGERAEAMIDALASRERISFAAA 563

Query: 471 QKF-------ANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFG 522
            +        A    +  +   + +  L  + +  + P      +L       +  S   
Sbjct: 564 LRRVDEAYGMAARSANAVKKFNELLAGLRQVVESGAGPAAVLEAVLEETGYLAELQSSTD 623

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYS-----------SLQELISELEQYPPTIKRAHSAN 568
            +    ++ L E  +  L  E++              SL + +  +     + +     +
Sbjct: 624 PQDETRVENLQELASVALEYEKDPGERPEGDEGPPVGSLADFLERVALVADSDQIPDDED 683

Query: 569 HNEV-RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            + V  +MT+HTAKGLE PVVFL      +F H                           
Sbjct: 684 GSGVITMMTLHTAKGLEFPVVFLTGMEDGIFPHMRALD---------------------- 721

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                       K    EE  RL YVG+TRA  +L + +    S   + +       + +
Sbjct: 722 ------------KVKELEEERRLAYVGLTRARQRLYLTRSVLRSAWGQPSYNPASRFLEE 769

Query: 688 SFHNDERVKKI 698
                   K+ 
Sbjct: 770 IPEKLIEWKRT 780


>gi|239998017|ref|ZP_04717941.1| UvrD [Neisseria gonorrhoeae 35/02]
 gi|240113875|ref|ZP_04728365.1| UvrD [Neisseria gonorrhoeae MS11]
 gi|240116607|ref|ZP_04730669.1| UvrD [Neisseria gonorrhoeae PID18]
 gi|240124760|ref|ZP_04737646.1| UvrD [Neisseria gonorrhoeae SK-92-679]
 gi|268593866|ref|ZP_06128033.1| DNA helicase II [Neisseria gonorrhoeae 35/02]
 gi|268599941|ref|ZP_06134108.1| DNA helicase II [Neisseria gonorrhoeae MS11]
 gi|268602276|ref|ZP_06136443.1| DNA helicase II [Neisseria gonorrhoeae PID18]
 gi|268683334|ref|ZP_06150196.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679]
 gi|268547255|gb|EEZ42673.1| DNA helicase II [Neisseria gonorrhoeae 35/02]
 gi|268584072|gb|EEZ48748.1| DNA helicase II [Neisseria gonorrhoeae MS11]
 gi|268586407|gb|EEZ51083.1| DNA helicase II [Neisseria gonorrhoeae PID18]
 gi|268623618|gb|EEZ56018.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679]
          Length = 735

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|240015007|ref|ZP_04721920.1| UvrD [Neisseria gonorrhoeae DGI18]
 gi|240122076|ref|ZP_04735038.1| UvrD [Neisseria gonorrhoeae PID24-1]
 gi|254494631|ref|ZP_05107802.1| DNA helicase II [Neisseria gonorrhoeae 1291]
 gi|226513671|gb|EEH63016.1| DNA helicase II [Neisseria gonorrhoeae 1291]
          Length = 735

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|303253078|ref|ZP_07339228.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307248354|ref|ZP_07530377.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302648063|gb|EFL78269.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306855092|gb|EFM87272.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 732

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 112/551 (20%), Positives = 191/551 (34%), Gaps = 121/551 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  +LDF +L+I   +L + +     I  +  Q    ILIDE QDT+ I
Sbjct: 176 QIYQIYQDACDRAGLLDFAELLIRAYELFRDKP---PILQRYQQLFQQILIDEFQDTNNI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++IR L  +             +  VGD+ QSIY + GA+ + + R     QK     
Sbjct: 233 QYDLIRLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLNDYQK----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ S  E+  G +                     LW
Sbjct: 278 ---AETIRLEQNYRSTGHILATANELISNNEDRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    Q +         F+ L +       AR +A  I      +           
Sbjct: 314 -------TDQGDGDPVEIYCAFNELDE-------ARFVASQIKQWKEDEGDL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  VL R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --NECAVLYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  I    R    T+++ IQ      + +    S     
Sbjct: 406 QDDAAFERVINTPPRGIGERTLDTIRQITRDRQITLWQAIQVAVQEEQLSGRAASALLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ I+ L    +     +    ++      + +    G +    I+ L+E +  T +   
Sbjct: 466 VELINALEQETEQMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFSK 525

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    S L   ++             S + + V +MT+H+AKGLE P VF+V     +
Sbjct: 526 PDEAEEMSDLTAFLTHASLEAGEA--QASPHQDYVELMTLHSAKGLEFPRVFMVGVEEGI 583

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                          +   +E  RL YVG+TR
Sbjct: 584 FPSGMSFD-----------------------------------EGRLQEERRLAYVGITR 608

Query: 658 ASDQLIICKHS 668
           A  +L I    
Sbjct: 609 AKKKLTISYAE 619


>gi|149928113|ref|ZP_01916360.1| UvrD/REP helicase [Limnobacter sp. MED105]
 gi|149823199|gb|EDM82436.1| UvrD/REP helicase [Limnobacter sp. MED105]
          Length = 743

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 95/578 (16%), Positives = 189/578 (32%), Gaps = 110/578 (19%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               +D+    K  ++      +   L   YE   ++  V+DF +L++ + +LL      
Sbjct: 143 VGSAKDQGLRPKDVEAHDEYHRMMVRLYEAYEAQCQREGVVDFAELLLRSFELLGANPA- 201

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R        +IL+DE QDT+ +Q+  ++ L                +FAVGD+ QSI
Sbjct: 202 --LREHYQARFKYILVDEFQDTNSLQYNWLKRLAG----------PQGCIFAVGDDDQSI 249

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+F GA    +++ +     +        + I+L  ++RS  ++L   + + +  +   G
Sbjct: 250 YAFRGARVANMVQFENDFNVQ--------NRIKLEQNYRSVGNVLKAANVLIAHNKARLG 301

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                 +LW       ++        + +  D           A
Sbjct: 302 K---------------------ELW------TEAGEGEAIRVYEATSDQDE--------A 326

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I   I  ++  +              DI +L R    + ++         +  +    
Sbjct: 327 AFIIDRIKKLVLEE---------GYGRSDIAILYRSNAQSRVVEQAL----FNAGMPYRV 373

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  +   IK  +A  R + + +DD SF  ++  P        + ++      +  +
Sbjct: 374 YGGLRFFERAEIKHALAYLRLMDNADDDNSFSRVVNFPARGIGARSVEQLQDISTAQGTS 433

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNE 524
           +Y  I +      +  +     I  +    +  S  D    ++        F +   G +
Sbjct: 434 LYRAIHRMEGRAQAGLKKFADLIERMRFETRGLSLADLVDKVINESGLVAHFQADKDGED 493

Query: 525 VIDVLDEFLNFTLRNE-------------QNSYSSLQELISELEQYPPTI-KRAHSANHN 570
            ++ L E +N                    +    +  L   L          A +A   
Sbjct: 494 RVENLKELVNAAASFAIAEGYYQDAAATMVDEEKLITPLADFLSHASLEAGDNAAAAGQE 553

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT H+AKGLE   VF+      +F H++     +                      
Sbjct: 554 AIQLMTAHSAKGLEFKCVFVTGLEEGLFPHENSIGNSVEGGDGTSV-------------- 599

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                         EE  RL+YV +TRA +QL +    
Sbjct: 600 -----------EAVEEERRLMYVAITRAREQLFLSHAQ 626


>gi|120436669|ref|YP_862355.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella
           forsetii KT0803]
 gi|117578819|emb|CAL67288.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella
           forsetii KT0803]
          Length = 787

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/678 (16%), Positives = 221/678 (32%), Gaps = 134/678 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y +   K   +DF+DL++ TN+LL +      + +K      +IL+DE QDT+
Sbjct: 189 LGEIYKAYVDRCFKAGAMDFDDLLLKTNELLNRFPE---VLHKYQSRFKYILVDEYQDTN 245

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++R+L++ F          + +  VGD+ QSIY+F GA    +L  ++       
Sbjct: 246 HSQYLIVRALSDKF----------QNICVVGDDAQSIYAFRGANINNILNFQKDYDN--- 292

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +  L  ++RS+ +I+   + +    +                           
Sbjct: 293 -----VQMYRLEQNYRSSKNIVEAANSIIDKNQTKLDKI--------------------- 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W        ++  P+        D            R +A +I         F N  + 
Sbjct: 327 VW------TANEDGPKIIVNRLLTDGEEG--------RYVASSI---------FENKMQN 363

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D  +L R    +  +    R       I               IKD++A  R IL
Sbjct: 364 QMDNGDFAILYRTNAQSRAMEDALR----KKDIPYRIYGGLSFYQRKEIKDVLAYLRLIL 419

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA-------NCGISKF 481
           + +D+ +   ++  P     +  + ++         +++E I+              +K 
Sbjct: 420 NPKDEEALKRVINYPSRGIGQTTMDRLAIAANQHKISMFEVIKNIDKLELKINRGTQTKL 479

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
            + +  I     + +          +       Q+       E    I+ ++E LN    
Sbjct: 480 VNFVNMIRSFAIMNETSDAFQIAETVTKKTGLVQELKKDGTPEGIARIENIEELLNGMRD 539

Query: 539 NEQNS------YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +          SL E + ++     T     + + + V +MT+H AKGLE P V++V 
Sbjct: 540 FVEGQKELADATGSLSEFLEDVALA--TDLDNDTGDDDRVALMTIHLAKGLEFPYVYIVG 597

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F                                          +S  EE  RL Y
Sbjct: 598 MEEDLFPSGMSMNT----------------------------------RSELEEERRLFY 623

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V +TRA  Q  +    +     K         +       E +    L   + +D++   
Sbjct: 624 VAITRAEKQAYLTYTLSRYRWGKLVDAEPSRFI-------EEIDDQYLDLMVPQDDYKYK 676

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                      +++ + ++Q   +   P     P +  + +   L P+  +     N   
Sbjct: 677 PLIDTDIFGDAVDKSK-LRQTKPKSGTPPPAHKPSEEQLRKLRKLKPAATEPSKARNTLD 735

Query: 773 LLSDNQ----TFNRGLII 786
           L   N+     F RG ++
Sbjct: 736 LAEGNEVEHMRFGRGTVM 753


>gi|237746997|ref|ZP_04577477.1| DNA helicase II [Oxalobacter formigenes HOxBLS]
 gi|229378348|gb|EEO28439.1| DNA helicase II [Oxalobacter formigenes HOxBLS]
          Length = 762

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/610 (16%), Positives = 200/610 (32%), Gaps = 144/610 (23%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +         ++R     + ++          L   YEE  ++  V+DF +L++ + +LL
Sbjct: 138 RNLMYFINGAKERGFRASVIEAQDDYERKMVELYGLYEEQCQREGVVDFGELLLRSCELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +K  V   +R    +   HIL+DE QDT+ +Q++ ++ +  +             +FAVG
Sbjct: 198 EKNPV---LREHYQERFRHILVDEFQDTNNLQYKWLKLMAGNNTA----------IFAVG 244

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +L  +     +        ++I L  ++RS  +IL   + + + 
Sbjct: 245 DDDQSIYAFRGANVGNMLSFQHDFNVQ--------NLIRLEQNYRSHGNILEAANTLIAH 296

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             +  G +        H  +  G+   V                             +  
Sbjct: 297 NTHRLGKNL-------HTDAGEGEPIRVC----------------------------EAP 321

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           S     + I   ++++IG            +   +I VL R    + +I           
Sbjct: 322 SDLNEVQWILDEVNHLIGDG----------MSRSEIAVLYRSNAQSRVIEHGL----FSA 367

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-Q 459
            I           +   IK  +A  + I + +++ +F+ ++  P        + ++    
Sbjct: 368 GIPYRVYGGLRFFERAEIKHAIAYLQLIDNPDNNAAFLRVVNFPARGIGARTVEQLQEMS 427

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R    ++Y  I   +    +     ++ I  +    +  +        L        + S
Sbjct: 428 RIHDVSLYGAIPYVSGKAGTALASFVRIIQTIRAEVKEMNLPSLIQTTLEKSGLLLHYQS 487

Query: 520 RF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549
              G + I+ L++ ++           SL+                              
Sbjct: 488 EKEGADRIENLEQLVSAATLFLSEEGFSLEAPALLTEKMTDGLNAGNPLLAVDSVIGADI 547

Query: 550 --------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                   L + L        +       + +++MTVH+AKGLE   VF+      +F H
Sbjct: 548 PLPMIMSPLAAFLTHASLEAGENQADEGQDALQLMTVHSAKGLEFDAVFITGLEEGLFPH 607

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           ++                                     ++   EE  RL+YV +TRA  
Sbjct: 608 ENS----------------------------------AREEDGLEEERRLMYVAITRAKK 633

Query: 661 QLIICKHSNT 670
           +L +      
Sbjct: 634 RLYLSYAQTR 643


>gi|126662607|ref|ZP_01733606.1| ATP-dependent helicase [Flavobacteria bacterium BAL38]
 gi|126625986|gb|EAZ96675.1| ATP-dependent helicase [Flavobacteria bacterium BAL38]
          Length = 1062

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 145/868 (16%), Positives = 304/868 (35%), Gaps = 106/868 (12%)

Query: 82   KNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
            K+  ++ +++   D  ++    +  S     +   + + Y+ F   L  L+L   +   +
Sbjct: 284  KSPYSKSVSQFDKDFIDENASEILASVVAINEKAGKISMYEAFLQNLNPLSLLNTIYQEF 343

Query: 138  EEAKKKNCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
            ++ +++  ++   DF  +I N          + +I  ++ ++  H  IDE QDTS++QW+
Sbjct: 344  KQIQEEQNLVSISDFNKIIHNEIQ----NQPAPFIYERLGEKYRHYFIDEFQDTSVMQWQ 399

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
             +  L ++   G++      TL  VGD KQ+IY + G + ++ +   + ++K    + + 
Sbjct: 400  NLIPLIDNALSGQDDFGQQGTLMLVGDPKQAIYRWRGGKAEQFIDLAKEDKKHNPFSNKD 459

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               + L  ++RS ++++   +  F    +       ++    + H+     + G V L  
Sbjct: 460  KETLRLGTNYRSFSEVIHFNNAFFYQLSDKFQNEDYKNLYENLSHQEVNSKKGGYVNLSF 519

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
              V + +++            D+            +   TI   I              +
Sbjct: 520  IEVPEDETEVEGFD------SDNDSITIKDKYYLNQTLRTIEKCIANG----------FE 563

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             KDI++L R +     +            + ++ ++  ++ +   +K L+AL R++ + +
Sbjct: 564  YKDIVLLTRTKAPGIKLANFLTE----NSVPILSSETLLIQNATEVKLLIALLRYLKNPK 619

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
            DD S V  L            + I         ++++I    +    + +  +K I   I
Sbjct: 620  DDESKVYFL------------YFIAKYLQSELEIHDFILAAKDKNSEELESFLKTIGIEI 667

Query: 493  HIAQ--FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                    S ++    IL A     +  +         L  FL+  L  +    SS+ + 
Sbjct: 668  SFKNCKKKSLYEAVE-ILIATFLNDKVNTS-------YLQYFLDLVLEKDVKVQSSISDF 719

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +   ++             N VRIMT+H +KGLE PVV               K    + 
Sbjct: 720  LEYWDKIGYQKSIPSPEGTNAVRIMTIHKSKGLEFPVVIFPFAEEDFSRKIKDKLWIPLE 779

Query: 611  SLNDDPGIPIWIPQSKSRN--NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
              N D    +   + +     N    + +   +    +   +LYV +TRA +QL +  + 
Sbjct: 780  DSNIDLPKALINNRKEVETYGNEAKTIFQTKNQEEVLDTINVLYVALTRAEEQLYVISNK 839

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
              + +                  +     ++      K E    E+    P    + +  
Sbjct: 840  LVTKKGDLVTN------------NLSYYFLEFLQICEKYEETKLEYEFGTPTRISVNKAH 887

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
              K         K               LNP  I    +  L          N G I+H+
Sbjct: 888  QGKNNQIGIVTHK---------------LNPKNIKIAQREALMWGTLQQDAINFGNILHE 932

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
            ++  I    +      I         L    +      +I +++ +  +      D  ++
Sbjct: 933  IMAFIH--TKEDVDLAIQK--ATEFGLITFSQNPIFKETIGKIVNHEELNLFF--DVEAK 986

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            V     I    K    + + D++ I     ++ +YKT              H AQL  YE
Sbjct: 987  VYNEQNI---IKKATKNSKPDRVVIKDNLAYLLDYKTG--------EKHNKHKAQLEEYE 1035

Query: 909  KILKDS-YPNKSLVCLLIYVSEPKVFII 935
              L++  Y    +  +LIY+   +   I
Sbjct: 1036 LALQEMNYT--VVKKVLIYI--GESIEI 1059


>gi|260892971|ref|YP_003239068.1| UvrD/REP helicase [Ammonifex degensii KC4]
 gi|260865112|gb|ACX52218.1| UvrD/REP helicase [Ammonifex degensii KC4]
          Length = 707

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 111/741 (14%), Positives = 224/741 (30%), Gaps = 137/741 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+  + + Y  V                 +  +  +L            
Sbjct: 27  GAGSGKTRVLTYRIAYLITYRGVPPEAILALTFTNKAAEEMRARVTSLLPREAEDLWVMT 86

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK------- 118
           F    +  L Q+         ++      D +  L +     + + ++            
Sbjct: 87  FHAACARLLRQEIHHLGR--DRDFAIYDEDDRRALMRECLRELDLDEQRFPPAGIIGAIS 144

Query: 119 -----------MFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                      M +   +        + A Y++  ++   LDF+DL++    L ++    
Sbjct: 145 WAKNWLVTPEIMAERARSIYEEKVAKIFALYQQKLRQYNALDFDDLLVEAVRLFREHPE- 203

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +  +  +   +IL+DE QDT+  Q+  +  L +            R +  VGD  Q+I
Sbjct: 204 --VLARWQRRFRYILVDEYQDTNHAQYVWLNLLAQ----------GHRNITVVGDPDQAI 251

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +R           +  +I+L  ++RSTA IL + D++    +  + 
Sbjct: 252 YGWRGADIRNILSFERDYP--------EARVIKLEKNYRSTAPILALADEIIKYNQLRKE 303

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                                 +        D + +       A
Sbjct: 304 KVLRPVKP----------------------------GGELPVVYVATDEVGE-------A 328

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A TI  +  +              +D  VL R    + ++  +         I    
Sbjct: 329 NFVAETIKRLRAS---------HGYSWRDFAVLYRTNAQSRVLEEVF----LVAGIPYFI 375

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-- 464
                      IKD++A  R +++  D LS   ++  P     E    ++          
Sbjct: 376 VGGVQFYARKEIKDVLAYLRLVVNPADALSLKRVINVPPRGIGEGYYNRLLNFASSQGLS 435

Query: 465 -----TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                   E I        +  + + + + EL   A           IL     R   + 
Sbjct: 436 PALALLQAEDIPGLPRRVKAAMRELGELLTELRSRAM-GPVKPLVEEILSRTGYRTHLLK 494

Query: 520 RFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
               E    ++ L E ++     +     +L + ++ +  +    K       + V +MT
Sbjct: 495 EGTPEALARLENLQELISVAWEFDMEVGGNLSDFLASIALFSEVDKYDPET--DAVVLMT 552

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE PVVFLV     +F H                                    
Sbjct: 553 LHSAKGLEFPVVFLVGMEEGLFPH----------------------------------AR 578

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
               ++  EE  RL YVG+TRA ++L + +        ++        + +       + 
Sbjct: 579 CLGDRAALEEERRLCYVGITRAKERLYLVRSQERRLYGEARANPPSRFLREIPAELYELY 638

Query: 697 KIKLTNSINKDEWIAYEWSTH 717
                 + ++      E    
Sbjct: 639 SPPPVPACSERAAEDLEPGDR 659


>gi|254508570|ref|ZP_05120687.1| DNA helicase II [Vibrio parahaemolyticus 16]
 gi|219548512|gb|EED25520.1| DNA helicase II [Vibrio parahaemolyticus 16]
          Length = 723

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/549 (17%), Positives = 183/549 (33%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+       IR        HIL+DE QDT+ I
Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRD---KKHIREHYQARFKHILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +            
Sbjct: 229 QYAWLRMMAG----------PDSHVMIVGDDDQSIYGWRGAKIENIEKFTLEFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     +                  
Sbjct: 310 -------TEGAEGEPISVYSAYNELDE-------ARFAVNKVKEWQDKGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R + ++
Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMANR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R +  T++E   +       A          
Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRFAARDQGCTMWEASIRLLDDKVLAGRAAGALSRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ ++ L         H+    ++        +    G +    I+ L+E +  T + E+
Sbjct: 462 VELVNALEDDTCEMPLHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 522 PEEAEEMTLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHS 668
           ++L I    
Sbjct: 608 EKLYITYAE 616


>gi|256824633|ref|YP_003148593.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547]
 gi|256688026|gb|ACV05828.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547]
          Length = 831

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 111/760 (14%), Positives = 209/760 (27%), Gaps = 144/760 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P      VS  +      +     T+      L+         +  
Sbjct: 132 AAAEMRERVEALVGPPARAMWVSTFHSACVRILRREAKTV-----GLRSTFSIYDAADSQ 186

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+S         P++       ++ S    E L                          
Sbjct: 187 RLISLVLRELDLDPKRFPPGAVSHRISGAKNELLDAEAF-----------ANAVNENNPY 235

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  ++   LDF+DLI+ T ++L+       +     +   HIL+DE Q
Sbjct: 236 DRAIAEVYTRYSQRLREANALDFDDLIMMTVNILQAFPA---VAEHYRRRFRHILVDEYQ 292

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPR---------TLFAVGDEKQSIYSFHGAEPKRV 237
           DT+  Q+ ++R LT             +          L  VGD  QSIY+F GA  + +
Sbjct: 293 DTNHAQYVLVRELTGGAGSTGGVEPGQQPAEHQVPPAELCVVGDADQSIYAFRGATIRNI 352

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           +  +            +   I L  ++RST  ILT  + +    E  +  +  S      
Sbjct: 353 VEFETDYP--------EARTILLEQNYRSTQTILTAANTLIGRNERRRAKNLWSEA---- 400

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                                    +  +       +   +       A  +A  I  ++
Sbjct: 401 ------------------------GDGDRIVGYVADNEHDE-------ASFVAERIDQLV 429

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                            D+ V  R    +  +  +         +           +   
Sbjct: 430 DRGEAV---------PGDVAVFYRTNAQSRALEEVF----VRVGLPYRVVGGTRFYERRE 476

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYI 470
           IKD +A  R +++  D ++   +L  P     +     +          +       E  
Sbjct: 477 IKDALAYLRVLVNPTDTVNLRRILNVPKRGIGDRAEGALVALAERERIPFVAALGRAEDA 536

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
              A   +   Q     +  L  +A+      D    +L      QQ       +    +
Sbjct: 537 PGLATRSLKAVQSFASLLEALRTVAEAGGGVADVLEAVLEQTGYAQQLRDSDDPQDESRL 596

Query: 527 DVLDEFLNFTLRNEQ-------------NSYSSLQELISELEQ-YPPTIKRAHSANHNEV 572
           + L E ++     ++                + L   + ++             +    V
Sbjct: 597 ENLAELVSVAREFDEAAADPDSPTAGEVGGAAHLAAFLEQVSLVADTDAGADEDSEQGVV 656

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H+AKGLE PVVFL       F H                                
Sbjct: 657 TLMTLHSAKGLEFPVVFLTGLEDGTFPHMRSLNDP------------------------- 691

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                       EE  RL YVG+TRA ++L + + S  S             + +   + 
Sbjct: 692 ---------DELEEERRLAYVGITRARERLHLSRASVRSAYGSPQYNPPSRFLGELPEHL 742

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
              ++     +       A                  ++ 
Sbjct: 743 LHWEREGAVGAHAPTSQPAVARLAGRIAPERTRTVVQLEA 782


>gi|221124374|ref|XP_002163232.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 815

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/586 (17%), Positives = 189/586 (32%), Gaps = 143/586 (24%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+  ++  V+DF +L++ + +LL+     A IR    +   HILIDE QDT+ +
Sbjct: 178 EIYQLYEDQCQREGVVDFGELMLRSFELLRDN---APIREHYQRRFRHILIDEFQDTNKL 234

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  I+ +      G +      ++ AVGD+ QSIY+F GA    +    R    R    
Sbjct: 235 QYAWIKMIAGVGQGGSDA--GAGSVLAVGDDDQSIYAFRGARVGNMTDFVREFAVR---- 288

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  ++RS ++IL   + + S      G +                       
Sbjct: 289 ----QQIKLEQNYRSYSNILDSANALISHNSRRLGKNL---------------------- 322

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                + D         + +  D           A+ +   +  +I  D          +
Sbjct: 323 -----RTDQGAGEPVRVYEAPSDFAE--------AQWMVDEMKQLIRDD----------V 359

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VL R    + +I         +  I           +   IK  +A  R + + 
Sbjct: 360 PRSEIAVLYRSNAQSRVIETGL----FNAGIPYRVYGGLRFFERAEIKHALAYLRLLENP 415

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD SF+ ++  P        I ++    R    ++++ +        +     +  +  
Sbjct: 416 NDDTSFLRVVNFPARGIGARSIEQLQDLARATGCSLHDAVSTLTGRPGAVIAGFVAKLDV 475

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN---------- 539
           +       +  D   L+L      + + + R G + ++ LDE +N               
Sbjct: 476 MREQTADLNLKDIIKLMLEHSGLLEHYRNEREGEDRVENLDELVNAAESFVMQEGFGREA 535

Query: 540 ----------------------------------EQNSYSSLQELISELEQYPPTIKRAH 565
                                               ++  +L  L + L           
Sbjct: 536 PGMAPLVSSPEALLSQSPASQGLSGEALETAPDEFGDTGETLSPLQAFLTHAALEAGDNM 595

Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            +A  + +++MTVH++KGLE   VF+      +F H++                      
Sbjct: 596 AAAGQDAIQLMTVHSSKGLEFDCVFITGMEEGLFPHENS--------------------- 634

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                               EE  RL YV +TRA  +L +      
Sbjct: 635 -------------MSDHDGLEEERRLAYVAITRARKRLYLSHSQTR 667


>gi|222111848|ref|YP_002554112.1| uvrd/rep helicase [Acidovorax ebreus TPSY]
 gi|221731292|gb|ACM34112.1| UvrD/REP helicase [Acidovorax ebreus TPSY]
          Length = 826

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/617 (16%), Positives = 200/617 (32%), Gaps = 142/617 (23%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K+        ++     +   +  A       L   YEE  ++  V+DF +L++ + +LL
Sbjct: 177 KQLAYFIAGCKEEGMRPRDVPAHDADTRKKVELYQLYEEQCQREGVVDFGELMLRSFELL 236

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  D    +R    +   HIL+DE QDT+ +Q+  ++ +  D   G     +  ++ AVG
Sbjct: 237 RDND---PVRAHYQRRFAHILVDEFQDTNKLQYAWLKQMAGDVVDGCLH--TQGSVLAVG 291

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +    R    +          I+L  ++RS ++IL   + + S 
Sbjct: 292 DDDQSIYAFRGARVGNMQDFVREFDVQ--------HQIKLEQNYRSYSNILDSANALISH 343

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +  +T          G    V+++                          + +
Sbjct: 344 NSRRLGKNLRTTQ---------GPGEPVRIY--------------------------EAN 368

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           S    A+ +   I  ++    +           K+I VL R    + +I         + 
Sbjct: 369 SDLAEAQWMVDEIKQLVRDGEMP---------RKEIAVLYRSNAQSRVIESAL----FNA 415

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            +           +   IK  +A  R + +  DD SF+ ++  P        +  +    
Sbjct: 416 SVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLRVVNFPPRGIGARTLEVLQDAA 475

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R    ++++ +        +     +  +  L    Q  +       +L +    + +  
Sbjct: 476 RSSGCSLHDAVSAVPGKAGTNLGAFVALVQVLREQTQGQNLRGIIGQVLESSGLLEHYRH 535

Query: 520 RF-GNEVIDVLDEFLNFTLRN--------------------------------------- 539
              G + ++ LDE +N                                            
Sbjct: 536 EKEGADRLENLDELINAAESFVTQEGFGRDAVALPLDEHGNALTQSPASQGLDPDAPMLN 595

Query: 540 -----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                + ++  +L  L + L             A  + V++MTVH +KGLE   VF+   
Sbjct: 596 APGNVDADTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDCVFIGGM 655

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F H++                                      +   EE  RL+YV
Sbjct: 656 EEGLFPHENS----------------------------------MSDRDGLEEERRLMYV 681

Query: 654 GMTRASDQLIICKHSNT 670
            +TRA  +L +      
Sbjct: 682 AITRARKRLYLSHSQTR 698


>gi|113460642|ref|YP_718708.1| DNA-dependent helicase II [Haemophilus somnus 129PT]
 gi|112822685|gb|ABI24774.1| ATP-dependent DNA helicase UvrD [Haemophilus somnus 129PT]
          Length = 726

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/550 (19%), Positives = 187/550 (34%), Gaps = 120/550 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++A  +  ++DF +L++   +L  K      I     Q   H+LIDE QDT+ IQ
Sbjct: 177 IYKIYQDACDRAGLVDFAELLLRAYELWLKNPH---ILQYYQQRFQHVLIDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  I+ L            S   +  VGD+ QSIY + GA+ + + R  +   K      
Sbjct: 234 YAWIKLLAG----------SQGNVMIVGDDDQSIYGWRGAQIENIHRFLKDFAK------ 277

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               II L  ++RST +IL   +++ S   N  G                       LW 
Sbjct: 278 --AKIIRLEQNYRSTGNILESANRLISNNSNRLGK---------------------DLW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  +    +     + F+ L +       A  ++  + N +               
Sbjct: 314 ------TAGEKGEPVGIYAAFNELDE-------ALFVSGQVQNWLDNGGKVD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           KI           +   IKD +A  R I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAF----LRAKIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ------HVI 485
           DD +F  ++ +P     E  +  +    R    T+++  Q      +   +        I
Sbjct: 407 DDAAFERVVNTPPRGIGERTLDILRNLTRERQVTLWQATQLAIQENLIPIRSVTVLLRFI 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--- 539
           + I+ L               ++        +    G++    I+ L+E +  T      
Sbjct: 467 ELINSLQQETAEMPLFVQTDFVIKHSGLYDMYKQEKGDKGEVRIENLEELVTATREFIKP 526

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E    S L   ++             +++   V++MT+H+AKGLE P VF+V     +F
Sbjct: 527 DEAEDMSDLVAFLTHASLESGEE--QAASHQPCVQMMTLHSAKGLEFPRVFIVGMEEGLF 584

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                      +  EE  RL YVG+TRA
Sbjct: 585 PS----------------------------------FRSGEDLARLEEERRLAYVGITRA 610

Query: 659 SDQLIICKHS 668
             +L +C   
Sbjct: 611 KQKLTLCYAE 620


>gi|194100011|ref|YP_002003150.1| UvrD [Neisseria gonorrhoeae NCCP11945]
 gi|193935301|gb|ACF31125.1| UvrD [Neisseria gonorrhoeae NCCP11945]
          Length = 735

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|59802078|ref|YP_208790.1| hypothetical protein NGO1757 [Neisseria gonorrhoeae FA 1090]
 gi|240017454|ref|ZP_04723994.1| UvrD [Neisseria gonorrhoeae FA6140]
 gi|240118830|ref|ZP_04732892.1| UvrD [Neisseria gonorrhoeae PID1]
 gi|260439632|ref|ZP_05793448.1| UvrD [Neisseria gonorrhoeae DGI2]
 gi|268604542|ref|ZP_06138709.1| DNA helicase II [Neisseria gonorrhoeae PID1]
 gi|291042871|ref|ZP_06568612.1| DNA helicase II [Neisseria gonorrhoeae DGI2]
 gi|293398115|ref|ZP_06642320.1| DNA helicase II [Neisseria gonorrhoeae F62]
 gi|59718973|gb|AAW90378.1| putative DNA helicase II [Neisseria gonorrhoeae FA 1090]
 gi|268588673|gb|EEZ53349.1| DNA helicase II [Neisseria gonorrhoeae PID1]
 gi|291013305|gb|EFE05271.1| DNA helicase II [Neisseria gonorrhoeae DGI2]
 gi|291611378|gb|EFF40448.1| DNA helicase II [Neisseria gonorrhoeae F62]
          Length = 735

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|282849710|ref|ZP_06259094.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745]
 gi|282580647|gb|EFB86046.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745]
          Length = 1251

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/698 (16%), Positives = 218/698 (31%), Gaps = 62/698 (8%)

Query: 28  VSDINKYVSLSME-TGNPTILKKAQTLQQASQTQCIEERFSLLSSF------FLTQK--- 77
              + +   + ++ TG             A       + +  +         F+  +   
Sbjct: 237 RERLERMEQILLDPTGPHKWQNIYDNQLAALGMLSAAQTWDDMGEACKHMDTFIKDQFRM 296

Query: 78  FTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRDRFNTYK---MFKSTLASLTLA 130
            + +       +  +   L    K+ LK  Q     + +     +    +      + L 
Sbjct: 297 GSKEAQAYDPILVAEFKSLGGQNKDDLKAMQAAIFTVPEATLQEQFKAQYPIIEGLVELT 356

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEV 185
              +  Y + K++  ++DF DL      LL     +     + +  ++      I++DE 
Sbjct: 357 IAFHQAYRDMKQEQGIMDFSDLEHLCLALLVEPGTEDDPQPSDVAKELQDTFKEIMVDEY 416

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q  +I  +           S     F VGD KQ+IYSF  A+    + +     
Sbjct: 417 QDTNGVQETIINLI-----------SRVDNRFYVGDVKQAIYSFRMADSSLFMEKYNTYG 465

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR---- 301
                       I+L  +FRS  +IL   + +F           + T        R    
Sbjct: 466 ----GNDAVERRIDLAKNFRSHENILAATNFLFYQIMTEDAAELNYTEAESLIPGRIVED 521

Query: 302 ---IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                  G V+L    VS+     +   E      D      +       I   I  +  
Sbjct: 522 APEDWVGGDVELQLLDVSKDTLGASESDE------DEGDDPENNERELDFIIQKIKEIHA 575

Query: 359 --TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                   +G  R I+ +D  +L R                    I  V N+R    +  
Sbjct: 576 TKKQVQNPDGTFRQIEWRDFAILRRSLAGWGTRAV---EAMRQAGIPAVVNERDGYFEAQ 632

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            I+ L+AL   I + E DL    +L S L     +++  +     E              
Sbjct: 633 EIQLLLALLSIIDNPEQDLPMAAVLHSGLVGLDANELGALRLS-GEGSLWSLMPTYAEET 691

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
              +    I ++     +++     D    I  ++           G      +    + 
Sbjct: 692 QDERLLAFIGHMERWRTLSRRHGVTDLLWDIYESQDYVNYVGAMPNGLVRRANVLALYDR 751

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAH-----SANHNEVRIMTVHTAKGLESPVVFL 590
               E + +  L   +  +E    + +        S   N VR+MT+H +KGLE PVVFL
Sbjct: 752 AKGYEASGFRGLFRFLRFVESLRDSNQDMPLANVVSEADNVVRLMTIHKSKGLEFPVVFL 811

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                +        ++ I  +            +          +    + + + E  R+
Sbjct: 812 SGVQKRFNMMDLRSELLIDKNAGLGLKGYFPDIRVSFPTMPWFYVKDVKEAALKAEEQRI 871

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           LYV +TRA D+L +          K    T  +++ ++
Sbjct: 872 LYVALTRARDKLFMTGFIKGFKNSKGVLSTIGELIKNA 909



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 67/224 (29%), Gaps = 14/224 (6%)

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
            + +    + +  E +   ++   E      L  PI         L  S    +    L+S
Sbjct: 1021 DATRRTAKISVSELKRRFQERELEAGTIDTLNEPIATVEVSADDLANSVFG-RKPQALQS 1079

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-ITRL 831
                      G ++H+ +Q +  +   +               +  +E   L    + + 
Sbjct: 1080 EDDVLTGAQWGTLMHEAMQWLPLVTYTQASLTKELDALVAKGTFTEEERNLLSDMSLYKF 1139

Query: 832  LENPMMTTAM-SCDSYSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFE 882
              + +    + +     E+  S               +++ + G ID          + +
Sbjct: 1140 FSSDLGKRLINAKRIERELPFSMLFEGKRVYDTLEDGENLFLQGIIDTAFEEDGEWVLVD 1199

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            YKT        E +   +  Q+ +Y++ L+       +    IY
Sbjct: 1200 YKTDRVTSG--EELIKRYKIQMDLYKEALQRL-TGMPVKACYIY 1240


>gi|297537598|ref|YP_003673367.1| UvrD/REP helicase [Methylotenera sp. 301]
 gi|297256945|gb|ADI28790.1| UvrD/REP helicase [Methylotenera sp. 301]
          Length = 732

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/585 (16%), Positives = 195/585 (33%), Gaps = 119/585 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K+ Q+     +D        ++     T  + +   Y++  +++ V DF +L++   +LL
Sbjct: 141 KQVQNFINGCKDEGLRAHAVEAYDPHSTKMREIFDEYDKQCQRDGVADFAELLLRCYELL 200

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           ++      IR        +IL+DE QDT+ +Q+  ++ L  +             +FAVG
Sbjct: 201 ERD---TNIRGHYQSRFKYILVDEFQDTNRLQYLWLKLLAGED----------NCMFAVG 247

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +   ++  + +        ++++L  ++RS ++IL   + + S 
Sbjct: 248 DDDQSIYGFRGARVGNMRDFEKDFKVQ--------NVVKLEENYRSHSNILDAANAIISH 299

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             N  G +                     LW        S    +       ++   +  
Sbjct: 300 NNNRLGKN---------------------LW-------TSAGAGEPVRVYDAYNDTDE-- 329

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A+ I   I  +    T             +I +L R    + ++         + 
Sbjct: 330 -----AQFIVDEIKMLHCEGTSL----------GEIALLYRSNAQSRILEQAL----FNA 370

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-Q 459
            +           +   IK  +A  R I +  DD + + ++  P        + ++    
Sbjct: 371 NLPYRVYGGLRFFERAEIKHALAYMRLIANANDDTALLRVINFPTRGIGARSLEQLQEVA 430

Query: 460 RHETETVYEYIQKFANCGI---SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
           R E  ++++        G       +  +  I +++  A   S  +   L +        
Sbjct: 431 RAENCSIWQAAINKVGNGKLGAKGIEGFVALIRQMVDNAYGISLRELTELAITMSGLVAH 490

Query: 517 FISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE---------LISELEQYPPTI-KRAH 565
           + +   G + I+ L E +   +      + +            L   L        +   
Sbjct: 491 YENDKEGEDRIENLKELVTAAVSFTNRDFGNHNNVDGETEQDLLTQFLSHASLEAGEHQA 550

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                 +++MTVH +KGLE   VF+      +  H+                        
Sbjct: 551 DVGREALQLMTVHASKGLEFKAVFISGLEEGLCPHEQSL--------------------- 589

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                         + +  EE  RL+YV +TRA  +L +    + 
Sbjct: 590 -------------FENAGLEEERRLMYVAVTRARQRLYLSHAQSR 621


>gi|307824211|ref|ZP_07654437.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
 gi|307734591|gb|EFO05442.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
          Length = 725

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 117/729 (16%), Positives = 235/729 (32%), Gaps = 137/729 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    VS  +             +  + + L   S        
Sbjct: 30  GAGSGKTRVLVHRIAWQIQVLGVSAHSILAVTFTNKAAKEMRGRIEELLNMSAQSMWIGT 89

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI- 110
           F              + L   F       Q  +I + +   + D  +   +    +I   
Sbjct: 90  FHGVAHRLLRRHAKQAKLPETFQVMDSGDQLRLIKRLLATLNLDADKWPPRQVQWYINAQ 149

Query: 111 -RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +      M ++          +   YE+   ++ ++DF +L++  ++LL+       +
Sbjct: 150 KDEGIRARHMMETGDPYQRQMLIIYKAYEQLCDRSGLVDFAELLLRAHELLRDNPD---V 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                Q    + +DE QDT+ IQ+  +R LTE              +F VGD+ QSIY +
Sbjct: 207 LDFYQQRFRQVHVDEFQDTNTIQYAWLRLLTE----------GKDNIFVVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +   ++              +I+L  ++RST +IL   +KV S+ +   G   
Sbjct: 257 RGAKIENIYSFQKHYPNH--------QVIKLEQNYRSTGNILKAANKVISVNDGRMGK-- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW           +    S  + F+   +       A  +
Sbjct: 307 -------------------ELW-------TDAGDGDLISLYAAFNEQDE-------AHFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I   +    +           KD+ +L R    +                       
Sbjct: 334 VERIRAWVNEGGL----------RKDVAILYRSNAQSRQFEERLMTT----GTPYRVYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               + + IK+ +A  R + +++DD SF  ++ +P        I  I    R ++ +++ 
Sbjct: 380 LRFFERVEIKNALAYLRLMSNRDDDASFERVINTPTRGIGAKTIDDIRNIARDQSLSLWA 439

Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519
                   +  +    +     ++ I      A+     +   L++         Q+  +
Sbjct: 440 AAIVLINQRTLSARATNALIGFLELIKRFDGQAEGLELFEKVKLVVEKSGLIELYQKDKA 499

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQ------ELISELEQYPPTIKR-AHSANHNEV 572
             G E ++ L+E +N     + ++   L+      EL   L                + V
Sbjct: 500 DKGEEKVENLEELVNAARLFDASTIGDLEDQENLGELDMFLANATLESGELQGDDFDDCV 559

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H+AKGLE   VFLV     +F  +                               
Sbjct: 560 QLMTLHSAKGLEFKQVFLVGMEEGLFPSQQSVDDVG------------------------ 595

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                       EE  RL YVG+TRA  QL +    +     +         + +     
Sbjct: 596 ----------RLEEERRLCYVGITRAMKQLYLTYAESRRLYGRETYPRPSRFLREIPSEH 645

Query: 693 ERVKKIKLT 701
            +  +++ T
Sbjct: 646 IQEVRMRAT 654


>gi|271500543|ref|YP_003333568.1| exodeoxyribonuclease V subunit beta [Dickeya dadantii Ech586]
 gi|270344098|gb|ACZ76863.1| exodeoxyribonuclease V, beta subunit [Dickeya dadantii Ech586]
          Length = 1230

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 136/1048 (12%), Positives = 285/1048 (27%), Gaps = 169/1048 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +         K  W     ++ D+      + +     +  +              ++  
Sbjct: 235  AEKTRQLAALKAPWTQWCDELRDLLNAAVAAKKADGRKLQAR--------YFDPWLDKLQ 286

Query: 68   LLSSFFLT--QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
              +S   T     T    +  Q + +      E         ++   +  +      +  
Sbjct: 287  HWASSDETTLDIGTGWTRLTPQGLRECWKIPDEAPSHPALRAMETLAQQLSDLPEPRSQL 346

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                 ++++  +   ++    + F+DL+   +  L+  D    +  +I ++    +IDE 
Sbjct: 347  LRHACRWIHQRFRSEQESRAQMGFQDLLTRLDGALRG-DNGERLAQRIRRQFPVAMIDEF 405

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT  +Q+ +  +L          +   + L  +GD KQ+IY+F GA+    LR +R   
Sbjct: 406  QDTDPLQYRIFDTLYRVAT-----NDPQQGLILIGDPKQAIYAFRGADIYTYLRARRD-- 458

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG-------LSEDSTTTIRHR 298
                          L  +FRST  ++  V++VF   EN             D    +   
Sbjct: 459  -------TDGRHYTLGTNFRSTQAMVDAVNQVFMQAENRANGAGAFLFRQPDGDNPVPFL 511

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMI 357
              +    G   +W       +         WT   D  L        +A   A  +  ++
Sbjct: 512  PVQAN--GRDDIW-----VQEGTPAAALTCWTLETDEPLSSSEYRQRMAAGCAREMVRLL 564

Query: 358  G------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                      + S+ + R ++  D+ VLV   ++   +             SV  +DR  
Sbjct: 565  QLGEQGQAGFVSSDQRWRPVKPGDMAVLVNTGREAMAVRAQLSA---RGVRSVYLSDRES 621

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D     +L          E+D      L +PL   S   + ++     E         
Sbjct: 622  VFDSPLAGELHCWLSACADPENDRLLRAALATPLLGLSWQALDRLNHDEQE--------- 672

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---V 528
                    +    ++Y                   +L      ++ ++      +     
Sbjct: 673  -----WERRVMQFVRYQQCWRQQ----GVLPMLRRLLWEFDVPRRLLAADNARALTDVLH 723

Query: 529  LDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            L E L      L  E      L E          ++K    ++ + V+++TVH +KGLE 
Sbjct: 724  LSELLQQASVHLDGEHALIRYLAEQCQADNPGSDSLKVRLESDADLVKVVTVHKSKGLEY 783

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            P+VFL    +          +             I             + +         
Sbjct: 784  PLVFLPFACAFRTVSHRDVPLKFHDDDGQPRLELI----------ASDEAVARADHERLG 833

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT---------------------WYDM 684
            E  R  YV +TRA   L +        EK +                          +  
Sbjct: 834  EDLRKFYVALTRARYALWLGVAPLKELEKSAPGYLLGAGEPVEAGQLASCLSLWIGPHSQ 893

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +     +D+ V +          E    +   H    T     +   +   +++      
Sbjct: 894  IAPLPESDDAVYRAARETPALGQEPPLPDIRRHRWRITSYSGLQLAPEGQYQERRESAAH 953

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLE---SLLSDNQTFNRGLIIHKLLQVIFTLP---- 797
               +         +      +    L     + S  +    G  +H LL+          
Sbjct: 954  DAAEVQSARQETFSEPQETAERLPPLPVGYDMYSFPRGAVPGSFLHGLLEWAGKEGFAAL 1013

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----------MTTAMSCDSY 846
               R         +  +         L   +   L  P+           +         
Sbjct: 1014 AADRPRVEDQVARRCNRQGWTPWIPMLTDWLMAQLNQPLALPASPAGTVSLAGLTQYQVE 1073

Query: 847  SEVSVS-----------------------GKINCPKKDIIISGRIDQISISQQNIFIFEY 883
             E   +                         +     + ++ G ID +   Q   ++ +Y
Sbjct: 1074 MEFWFALNQVDTQRLDQQVSAATLAGAPRVPLMRDALNGMLKGFIDLVFEHQGRYYVLDY 1133

Query: 884  KTHHHVPQEIE---------HIPYTHIAQLSIYEKILKDSYP--------NKSLVCLLI- 925
            K++       +          + + +  QL++Y   L             ++ +   L  
Sbjct: 1134 KSNWLGADAADYDLAHMARAMLDHRYDLQLALYLFALHRLLRSRLPDYDYDRHVGGALYL 1193

Query: 926  YVS------EPKVFIIPQNKLNKAFAEI 947
            ++              P   L  A   +
Sbjct: 1194 FLRGSQAPGGGVYAERPDRTLIDALDRL 1221


>gi|237736785|ref|ZP_04567266.1| ATP-dependent DNA helicase pcrA [Fusobacterium mortiferum ATCC
           9817]
 gi|229420647|gb|EEO35694.1| ATP-dependent DNA helicase pcrA [Fusobacterium mortiferum ATCC
           9817]
          Length = 726

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/609 (17%), Positives = 212/609 (34%), Gaps = 122/609 (20%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT---LAK 131
           T         I +++  K   LKE L        K+++   +   +++T        +  
Sbjct: 113 TDDQKRVAKNIMKDLVVKDKSLKEGL--VASIISKLKEDGISPDEYETTEKYNDNGKIVA 170

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y    K N  +DF D+++NT+ LL   D    +  K+ ++  +I++DE QDT+ I
Sbjct: 171 EVYRRYNSVLKNNNAMDFSDILVNTDRLLDIPD----VLDKVQEKFRYIMVDEYQDTNNI 226

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q++++  + + +            +  VGDE QSIY F GA  + +L  ++         
Sbjct: 227 QYKIVNKIAKKY----------GNICVVGDENQSIYGFRGANIQNILDFEKDYPN----- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               ++++L  ++RST+ IL   + V     +A+                        LW
Sbjct: 272 ---ATVVKLEENYRSTSVILDAANSVIRNNSSARDKK---------------------LW 307

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +   ++ +    +D   +       A  +   I            GK +  
Sbjct: 308 -------TKKTVGEKITVEGCYDGREE-------AGFVVGEI----------IKGKAKGA 343

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + KD  +L R    + +             I               IKD++A    I + 
Sbjct: 344 KYKDFTILYRTNAQSRMFEEKL----LRENIPYKIFGGMQFYQRAEIKDIVAYLAVINNT 399

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            D+L+   +L  P     +  + KI    + +  +++  + +       +          
Sbjct: 400 TDNLNLARILNVPKRKIGDKTVEKIEDFAKEQNLSLFSALGRANEIAGLSANLKITLLDF 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQ- 541
              + E I +++  +  + F  I+   K     I+         + ++E  N  +  E+ 
Sbjct: 460 YNMMREFIELSEGINVSELFDTIVREIKYSDYLIANYEDYEARKENIEELKNSIVELEKV 519

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +L+E +  +     T         + V++MT+H +KGLE P VF+V     +F   
Sbjct: 520 VENLTLREYLENISLVSATDNLEDE--KDYVKLMTIHNSKGLEFPTVFVVGVEEGLFPGS 577

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                   +  EE  RL YV +TRA D+
Sbjct: 578 ----------------------------------RADFDSNELEEERRLCYVAITRAEDK 603

Query: 662 LIICKHSNT 670
           L +    + 
Sbjct: 604 LYMTYAKSR 612


>gi|320009010|gb|ADW03860.1| ATP-dependent DNA helicase PcrA [Streptomyces flavogriseus ATCC
           33331]
          Length = 812

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 116/709 (16%), Positives = 221/709 (31%), Gaps = 134/709 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVS-DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P          +      +   +  +         +       +  
Sbjct: 126 AAGEMKERVEDLVGPRANAMWVMTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 180

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +    K  +LK +L        +          F+ T   
Sbjct: 181 RLMALVCRDLDLDP-KRYPPKSFTAKVSNLKNEL------IDEETFAGQAADGFEKT--- 230

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+D+I+ T  LL+       +     +   H+++DE Q
Sbjct: 231 ---LAQAYALYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVMVDEYQ 284

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L            +P  L  VGD  QSIY+F GA  + +L+ +     
Sbjct: 285 DTNHAQYTLVRELVG----PAGEADAPGELCVVGDADQSIYAFRGATIRNILQFEEDYP- 339

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    + I L  ++RST  IL+  + V    E+ +  +                  
Sbjct: 340 -------DATTIMLEQNYRSTQTILSAANAVIERNESRRPKN------------------ 374

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW       ++    +   + +  +           A+ +A  I  +          
Sbjct: 375 ---LW------TNAGTGTRITGYVADTEHDE--------AQFVADEIDRLTDAG------ 411

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +A D+ V  R    + +   +         +           +   ++D++A  R
Sbjct: 412 ---DAKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 464

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--- 482
            + + ED +    +L  P     +     I      E  +  + +++         +   
Sbjct: 465 VLSNPEDTVPLRRILNVPKRGIGDRAEAMIDALSMREKISFPQALRRVDEAYGMAARSAN 524

Query: 483 ---HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                   + EL  I +  + P      ++       +  +    +    I+ L E  + 
Sbjct: 525 AVKRFNTLMEELRTIVESGAGPAVVVEAVMERTGYLAELQASTDPQDETRIENLQELASV 584

Query: 536 TL-----RNEQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            L     R E+    +L E + +  L      I          V +MT+HTAKGLE PVV
Sbjct: 585 ALEFEQERAEEEGAGTLAEFLEKVALVADADQIPDEDEDGSGVVTLMTLHTAKGLEFPVV 644

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FL      VF H                                       +    EE  
Sbjct: 645 FLTGMEDGVFPHMRALG----------------------------------QVKELEEER 670

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           RL YVG+TRA ++L + + +  S   + +       + +        K+
Sbjct: 671 RLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPDQHLEWKR 719


>gi|301299732|ref|ZP_07205982.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852663|gb|EFK80297.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 744

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 119/807 (14%), Positives = 243/807 (30%), Gaps = 133/807 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L            
Sbjct: 30  GAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERVNNLMGEGAEDIWVST 89

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L +        ++      +++   +K+ L     +  K   R     +  +
Sbjct: 90  FHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQVLNDLNIDTKKYDPRAILSVISNA 149

Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L               +       Y+     N  +DF+DLI+ T  L  +   +  
Sbjct: 150 KNDLLDPKDYAQQANGPFEEIVSKAYFEYQNQLANNQAMDFDDLIMQTIRLFNESPET-- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 ++ ++I +DE QDT+  Q+E++  L   +          R L  VGD  QSIY 
Sbjct: 208 -LEFYQRKFHYIHVDEYQDTNEAQYELVNKLARKY----------RNLCVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + ++  +              ++I+L  ++RST +IL   + V     N +  +
Sbjct: 257 WRGANMENIMNFEEDYP--------DATVIKLEQNYRSTKNILAAANNVIENNVNRKDKT 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              +  +    ++  +       A  
Sbjct: 309 ---------------------LW-------TDNKQGDKIHYYRANNANEE-------AYY 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   I  +              D  +L R    + +I            I      
Sbjct: 334 VVKKIQEQIRNNGR---------HYGDFAILYRTNAQSRIIEETF----VKTNIPYKLVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I D +A  R + +  D +SF  ++  P  +     + K+    +    ++ 
Sbjct: 381 AHKFYDRKEIMDTLAYLRLVTNPADSMSFERIVNEPKRSIGSVTVGKLRTFSQIHGMSML 440

Query: 468 EYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  +  A         ++ +   + I +L    +  +  +    IL     +        
Sbjct: 441 EASKSAALAGVSAKASNELEKFAEMIEQLHEYQKAYNVTEVTERILDVTGYKANLQREDT 500

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQE---LISELEQYPPTIKRAH-SANHNEVRIM 575
            E    ++ L+EFL  T + +Q+     +E    +  L        +       +EV +M
Sbjct: 501 LENRNRLENLEEFLTVTKQFDQDWEPEDEESDPFVDFLADLALVSDQDSVEEEPDEVTLM 560

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE PVVFL+     +F                                     
Sbjct: 561 TLHAAKGLEFPVVFLMGLEEGIFPLS---------------------------------- 586

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
              + ++  EE  RL YVG+TRA ++L +    +     KS        + +      + 
Sbjct: 587 RAVMDENELEEERRLAYVGITRAEEELYLTNSISRMLYGKSQNNPASRFIEEIDEELIQS 646

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
               + ++    +           +        T+++  +     +      K       
Sbjct: 647 DNQTVASTTLTSKRTRSREVPFSKKPKYRMPAGTVERPKETGADKQSWNIGDKISHKAWG 706

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNR 782
                 +   G+     +  + +   R
Sbjct: 707 TGTIVKVSGDGEDTELDIAFEGKGIKR 733


>gi|314963433|gb|EFT07533.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA1]
          Length = 810

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 191/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +    LDF+DLI+ T  +L++      +R +      H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRCRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  + + I +        +    IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +   +  
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|300173630|ref|YP_003772796.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888009|emb|CBL91977.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG
           18811]
          Length = 747

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/501 (16%), Positives = 165/501 (32%), Gaps = 84/501 (16%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++  A       +   Y+   K++  +DF+DLI+ T DL +       +  +  ++  
Sbjct: 161 AKQADNAFQETVAEVYTAYQAELKRSQSVDFDDLIMLTIDLFQSSPE---VLERYQKQFE 217

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           ++ +DE QDT+  Q+ ++  L +            + L  VGD  QSIY + GA    +L
Sbjct: 218 YLHVDEYQDTNDAQYTIVNLLAK----------RSQNLAVVGDADQSIYGWRGANMNNIL 267

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             ++               + L  ++RST +IL   + V +                   
Sbjct: 268 NFEKDYPT--------AHTVMLEQNYRSTQNILDAANAVINHNNERVPK----------- 308

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                     +LW              + ++        +       A  I   I  M  
Sbjct: 309 ----------ELW-------TQNGKGDKITYYRAQTEHDE-------ANFILSNILKMRS 344

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
              +            D  VL R    +  +            +           +   I
Sbjct: 345 ESKMA---------YSDFAVLYRTNAQSRNVEESL----VKANMPYTMVGGHKFYERKEI 391

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQ 471
            D+M+    I + +++ +F  ++  P        + ++    +     Y       E   
Sbjct: 392 LDIMSYMNLITNPDNNAAFERVVNEPKRGIGATSLIRLRELANRLNVSYMTAIDSIELAP 451

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDV 528
           + +    +KF    + +HEL   ++F +  +   + +     RQ    +   +    ++ 
Sbjct: 452 EISTRAATKFLTFAEMMHELRQQSEFLNVTELAEMAMTKSGYRQMLAEKNDPDSQARLEN 511

Query: 529 LDEFLNFTLRNE----QNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           L+EFL+ T   +         ++  +   L      +           V +MT+H AKGL
Sbjct: 512 LEEFLSVTTEFDGKYNSEDPEAVDPMTDFLGSTALMSDLDDFEEGDGSVTLMTLHAAKGL 571

Query: 584 ESPVVFLVDTGSQVFSHKHIK 604
           E PVVFL+     +F      
Sbjct: 572 EFPVVFLIGMEEGIFPLSRSL 592


>gi|294142649|ref|YP_003558627.1| DNA helicase II [Shewanella violacea DSS12]
 gi|293329118|dbj|BAJ03849.1| DNA helicase II [Shewanella violacea DSS12]
          Length = 721

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/579 (17%), Positives = 192/579 (33%), Gaps = 116/579 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+E+  +  ++DF ++++  ++L         +         +IL+DE QDT+ I
Sbjct: 172 QIYQVYQESCDRAGLVDFAEILLRAHELWLNNPH---VLKHYQDRFKNILVDEFQDTNAI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L           S+   +  VGD+ QSIY + GA+ + + +      +     
Sbjct: 229 QYAWIRVLA----------SAGANVMIVGDDDQSIYGWRGAQVENLHKFLVDFPQ----- 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               S I L  ++RST  IL   +++ +   +  G                       LW
Sbjct: 274 ---ASTIRLEQNYRSTGHILKASNELIANNPDRLGKK---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  S    F+ + +       AR I   IS+                
Sbjct: 310 -------TQDKDGEPISVYCAFNEMDE-------ARFIVGRISDWHDMGGDL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    + ++            ++          +   IKD M+  R I ++
Sbjct: 348 --SGCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMSYLRLINNK 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
           +DD +F  ++ +P        +  +    R +  T+++   +       +    +  +  
Sbjct: 402 DDDAAFERVVNTPARGIGGRTLDILRATARQQKLTLWQTCLRAIEEKLLSGRAANAVRGF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-E 540
           +  I E+    Q  + H     I+     +  + +  G +     + LDE +        
Sbjct: 462 MDLIVEMQQDTQEMTLHRTTDHIIAKSGLKAMYEAEKGEKARSRVENLDELVTAARTFIM 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 + EL + L        +    A  + V++MT+H+AKGLE PVVF+      +F 
Sbjct: 522 PEDIEDIGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPVVFMSGVEEGIFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           +E  RL YVGMTRA 
Sbjct: 582 SQMAMDEG----------------------------------DRLDEERRLCYVGMTRAM 607

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           ++L I          + N       + +         ++
Sbjct: 608 EKLYITYAETRRIYGRENFARPSRFIKEIPTEHVEEIRL 646


>gi|225852895|ref|YP_002733128.1| ATP-dependent DNA helicase PcrA [Brucella melitensis ATCC 23457]
 gi|256045044|ref|ZP_05447945.1| DNA helicase II [Brucella melitensis bv. 1 str. Rev.1]
 gi|256263623|ref|ZP_05466155.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|260565357|ref|ZP_05835841.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|265991470|ref|ZP_06104027.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1]
 gi|225641260|gb|ACO01174.1| ATP-dependent DNA helicase pcrA [Brucella melitensis ATCC 23457]
 gi|260151425|gb|EEW86519.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M]
 gi|263002254|gb|EEZ14829.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093675|gb|EEZ17680.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409437|gb|ADZ66502.1| ATP-dependent DNA helicase PcrA [Brucella melitensis M28]
 gi|326539143|gb|ADZ87358.1| ATP-dependent DNA helicase pcrA [Brucella melitensis M5-90]
          Length = 858

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|224024112|ref|ZP_03642478.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM
           18228]
 gi|224017334|gb|EEF75346.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM
           18228]
          Length = 793

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/625 (15%), Positives = 186/625 (29%), Gaps = 127/625 (20%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTL--------AKYLNAHYEEAKKKNCVLDFEDLII 154
            Q    + ++       + ++               + +   Y E  +++  +DF+DL++
Sbjct: 140 VQSRISQAKNHLILPDAYAASGELYRADADAKMPQLRDIYLRYWERCRQSDAMDFDDLLV 199

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            T  L K       I  K      ++L+DE QDT+  Q  +++ LT             R
Sbjct: 200 YTYQLFKSHPE---ICDKYATHFEYVLVDEYQDTNYAQHCIVQLLTG----------KHR 246

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIYSF GA    +L    + +        +  + +L  ++RST  I+   
Sbjct: 247 RVCVVGDDAQSIYSFRGANIDNILNFTNLYR--------EARLFKLEQNYRSTQTIVKAA 298

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + + +           S                           + +       + +Y D
Sbjct: 299 NSLIAKNREQIRKEVFS---------------------------EKETGEPITVFCAYSD 331

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                      A  +   I  +   +              D  +L R    + +     R
Sbjct: 332 LEE--------AEIVGNRIMQLHSREH---------YGYSDCAILYRTNAQSRVFEETLR 374

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  I               IKD++A  R  ++  D+ +F  +L  P     +  + 
Sbjct: 375 ----KKNIPYRIYGGLSFYQRKEIKDIIAYFRLAVNPNDEEAFKRVLNYPARGIGDTTLN 430

Query: 455 KI-CTQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
           K+         +++        Y         +K Q     I   +      +  +    
Sbjct: 431 KLVDAANRHKVSLWTVVNEPLAYGVDINKGAHTKLQGFRALIAGFVEAVPQKNAFELGKE 490

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE---QNSYSSLQELISELEQYPPT 560
           I+      ++       E     + ++E +N         Q   ++   L   L +    
Sbjct: 491 IVFQSGIGREITQDRSPENLSRQENVEELMNGIHDFCATRQEEGNTHWLLSDYLSEVSLL 550

Query: 561 IKRAHSANHN--EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
             +    + +  +V +MT+H+AKGLE   VF+V     +F                    
Sbjct: 551 TDQDSDRDADLPKVTLMTIHSAKGLEFRNVFVVGLEENLFPG------------------ 592

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                     EE  RL YV +TRA D   +          KS  
Sbjct: 593 ----------------ASAASSYKELEEERRLFYVALTRAEDYCFLSYAKTRFKYGKSEF 636

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNS 703
            T    + D       + + ++   
Sbjct: 637 CTPSRFLKDIDSRYLNMPQEEMLAR 661


>gi|212219550|ref|YP_002306337.1| DNA-dependent helicase II [Coxiella burnetii CbuK_Q154]
 gi|212013812|gb|ACJ21192.1| DNA helicase II [Coxiella burnetii CbuK_Q154]
          Length = 723

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/579 (18%), Positives = 188/579 (32%), Gaps = 115/579 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE+  +++ ++DF          L+    SA +R    Q   HIL+DE QDT+ IQ
Sbjct: 177 VYKAYEDVCRQSGLVDFA---ELLLRTLELLRDSATLREHYQQRFQHILVDEFQDTNTIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +++L  +  V            AVGD+ QSIYS+ GA+ + +    R          
Sbjct: 234 YAWLKALAGEQTV----------FMAVGDDDQSIYSWRGAKIENIHHFSRDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL   + V    +N  G                       LW 
Sbjct: 276 AGVKTIRLEQNYRSTQTILDAANAVIDNNKNRFGKK---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +  +  + F+   +       A  +   I   +               
Sbjct: 314 ------TDSRTGEPITLYTAFNERDE-------AFYVISCIDAWVRQGH----------S 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D+ +L R    + L          D +I           +   IKD +A  R + ++ 
Sbjct: 351 YNDVAILYRSNAQSRLFEECL----IDRQIPYRIYGGLKFFERAEIKDALAYLRLMANRN 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++  P        +  +  T R    ++++  Q            ++  QH I
Sbjct: 407 DDAAFERVVNVPTRGIGNTTLVALRTTARDHAVSLWQATQHLITNQTLNARALNALQHFI 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQN 542
           + +  L    +     +    +L        +       G   ++ L+E +N T +    
Sbjct: 467 ELVDRLQDETKNLPLAEQTEKMLMGSGLLALYKKDNSEKGLSRVENLEELINATSQFTPT 526

Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              +L  L + L           ++ H + V +MT+H AKGLE P+V +      +F H+
Sbjct: 527 DDLALSPLDAFLSHVALETGEEQASAHSDCVSLMTLHAAKGLEFPLVIISGLEEDLFPHR 586

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                   +  EE  RL YVGMTRA ++
Sbjct: 587 MSID----------------------------------AANGLEEERRLCYVGMTRAREK 612

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           LI+    +               + +         +   
Sbjct: 613 LILTYTESRRLHGLEKFNQPSRFIQEIPPELIDAVRPTP 651


>gi|312171298|emb|CBX79557.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Erwinia amylovora ATCC BAA-2158]
          Length = 1134

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 137/968 (14%), Positives = 306/968 (31%), Gaps = 143/968 (14%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +     K  W         I+          +  +    + +   +Q +  +        
Sbjct: 184  ARISTLKQAWLAAGDLQQVIDASGVDRRSYNSKHLPNWLEKISLWAQAETQDYEVPKDLE 243

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             F  +    +    T++       L +++     E + +RD      + +     +    
Sbjct: 244  RFGQRLLLEK----TKKGEPPRHPLFDRIDAFLAEPLSLRDLVIARALQQ-----VRFVT 294

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                  ++ K+ +  L F+DL+   +  L++      +   I Q     LIDE QDT   
Sbjct: 295  ------QQQKRLHAQLGFDDLLGRFDAALQQPG-GEALASAIRQRYPVALIDEFQDTDPQ 347

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+ + R+L                L  +GD KQ+IY+F GA+    ++ +       T  
Sbjct: 348  QYRIFRTLYR--------RQPDSALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYT-- 397

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                    L  ++RS+  ++  V+++FS  +N    SE     +   +   G   +VQ  
Sbjct: 398  --------LETNWRSSPAMVNAVNQLFSGQQNPFLFSEIPFINVNPAAPNHGLNFSVQ-- 447

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-----NG 366
                     +  P  + W    D +        +AR+ A  I   +            +G
Sbjct: 448  --------GKVQPALQFWLQPGDGVGVSDYQQFMARQCAAEICRWLSAGQKGEALMGKSG 499

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            ++R +QA DI VLVR R +  +I      L      SV  ++R  +      ++++ L +
Sbjct: 500  QQRAVQASDITVLVRSRSEAAVIREALNAL---AIPSVYLSNRDSVFTTPEAREMLWLLQ 556

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +L+ E +      L + LF      +  +       + + +    +    +   + V+ 
Sbjct: 557  AVLAPEQERILRSALATSLFGTDALALDALSQDERAWDALVDEFVDYRQRWLQ--RGVLP 614

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNS 543
             + EL+              +L +  G ++            L E L      L +E   
Sbjct: 615  MLRELMMKR------QIAENLLASGNGERRLTDLL------HLGELLQEASATLDSEHAL 662

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               L + I + +    + +    ++ + V+I+T+H +KGL+ P+V+L    +        
Sbjct: 663  VRWLAQQIEQPDGQSASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVAN-------- 714

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                     ++          +        + I+  ++    E  RLLYV +TR+     
Sbjct: 715  -----FREADNGVYHDRQTFTALLDLQQSEESIELAEQERLAEDLRLLYVALTRSIFHCS 769

Query: 664  ICKHS--NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            +        + +K+ N       +       E      L  ++      A         +
Sbjct: 770  VGIAPLIKGTRKKEGNSDLHRSALGYLVQQGEPADATGLLAALQVLNSDATALIMAAEAD 829

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKN----------------DINEPYILNPSTIDTK 765
             P  + +  +  +   +   +                       +      ++ +   + 
Sbjct: 830  APPWQTQQEEVGILSSRTLPRSLRDNWRVTSYSGLQQHGHSIVMEWLPRLDVDAAGEASI 889

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
             +    +  +  +    G  +H L + +        +         +A+    +    + 
Sbjct: 890  ERVPQLTPHTFPRGAGPGTFLHGLFETLEFSAPLDEEWLAQQL---SAQALGEEWQPVMR 946

Query: 826  LSITRLLENPM------MTTAMSCDSYSE----VSVSGKINCPKKDIIIS---------- 865
              I R+L+ P+      +    +    +E    + +S  +     D ++           
Sbjct: 947  DWIERILQTPLNETGVSLYQLPAPARKAELQFYLPISRLLTSEALDRVVRQDPLSQPCPP 1006

Query: 866  -----------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLS 905
                       G ID +   Q   ++ +YK++        +             +  Q  
Sbjct: 1007 LDFHQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTQEAMAQAMQAHRYDLQYQ 1066

Query: 906  IYEKILKD 913
            +Y   L  
Sbjct: 1067 LYTLALHR 1074


>gi|225620088|ref|YP_002721345.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
 gi|225214907|gb|ACN83641.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
          Length = 665

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/602 (15%), Positives = 193/602 (32%), Gaps = 124/602 (20%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +       +AK +   Y+   K    +DF DLI  T DL         +  K  +   +I
Sbjct: 154 EPHDDLEKIAKRVYEVYQSYLKGYNAVDFNDLINLTIDL---YVEFPEVLNKYQERFRYI 210

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++DE QDT+  Q+++   L   +          R +  VGD+ QSIY+F GA+   +L  
Sbjct: 211 MVDEYQDTNFAQYKLTTLLASKY----------RNIAVVGDDDQSIYAFRGADVSNILSF 260

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           +               I+ L  ++RST  IL     V S     +     +         
Sbjct: 261 ENEYP--------DAKIVTLTKNYRSTKAILEAAHSVISNNTQRKDKKVVAE-------- 304

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                G   +   ++   D +                        A+ +A +I       
Sbjct: 305 -----GEEGIPPTIMPCEDERE----------------------EAQFVADSI------- 330

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
              +    + +  +D  VL R    + L     R       +       F   +   IKD
Sbjct: 331 --INYSISKRLNYEDFAVLFRMNAQSRLFEEAFR----LRGLPYTVVGAFQFYERKEIKD 384

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-------YEYIQKF 473
           ++A     ++ ED++S + ++  P        I  +     +           YE +   
Sbjct: 385 ILAYLNLFVNPEDEVSLLRVINIPKRGIGAVAINNLNEASIKNGVSLYETLLNYESMDDI 444

Query: 474 ANCGISKFQHVIKYIHELIHI-------AQFCSPHDFFTLILGAKKGRQQFIS-----RF 521
           +    +  +  ++ I    ++        +    ++     L       + ++       
Sbjct: 445 SPKAKAGIKDFLEVIDHYHNLFTVDKNALERPKLYENINKFLDVIAYHNEILNSSDTKEQ 504

Query: 522 GNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
           G + ++ ++  +N  L  E+++  ++L+  +  +       +         + +M++H A
Sbjct: 505 GAKKMENVESLMNGILEYEKSNKNATLKNYLDRILLMSIEEQNDDEDKKKGIMLMSIHAA 564

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE P V++      +  H+                                       
Sbjct: 565 KGLEFPYVYICGMEDGIMPHQKSLD----------------------------------- 589

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           ++  EE  RL YV MTRA   L +    + +   K  + T    + +   N      +  
Sbjct: 590 ENGLEEERRLCYVAMTRAKKHLTLTYCRSRTKMGKKVECTPSVFLEEMSANLPEEMAMNE 649

Query: 701 TN 702
             
Sbjct: 650 EE 651


>gi|241763721|ref|ZP_04761769.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241367026|gb|EER61411.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 821

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/592 (17%), Positives = 190/592 (32%), Gaps = 148/592 (25%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YEE  ++  V+DF +L++ + +LL+  D    IR    +   HIL+DE QDT+ +
Sbjct: 193 EIYQLYEEQCQREGVVDFGELMLRSYELLRDND---PIREHYQRRFQHILVDEFQDTNKL 249

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  +       + +  ++ AVGD+ QSIY+F GA    +    R    +    
Sbjct: 250 QYAWLKQLAGNDV--GGRYEARGSVIAVGDDDQSIYAFRGARVGNMTDFVREFDVQ---- 303

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  ++RS ++IL   + + S      G +  +T          G+   V   
Sbjct: 304 ----RQIKLEQNYRSYSNILDSANALISHNSRRLGKNLRTTQG-------AGEPVRV--- 349

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                     + SS    A+ +   I  ++  D           
Sbjct: 350 -------------------------YEASSDLAEAQWMLDEIKQLVRND---------GF 375

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + K+I VL R    + +I         +  +           +   IK  +A  R + + 
Sbjct: 376 ERKEIAVLYRSNAQSRVIESAL----FNASVPYRVYGGLRFFERAEIKHALAYLRLLENP 431

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD SF  ++  P        I  +    R    ++++ +        +     +  +  
Sbjct: 432 HDDTSFTRVVNFPPRGIGARSIEVLQDAARAAGCSLHDAVSAVPGKAGANLGAFVAMVDV 491

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539
           L    Q  +       +L +    + F +   G + I+ L E +N               
Sbjct: 492 LREQTQGLNLRGIIEQMLESTGLVEHFRTEKEGADRIENLQELVNAAESFVTQEGFGRDA 551

Query: 540 ----------------------------------------EQNSYSSLQELISELEQYPP 559
                                                   + ++  +L  L + L     
Sbjct: 552 VALPLDEHGTPLTQSAVSQGIDPHAPLLDEPLKPAVPGIVDADTGETLSPLAAFLTHAAL 611

Query: 560 TI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                   A  + V++MTVH +KGLE   VF+      +F H +                
Sbjct: 612 EAGDNQAQAGQDAVQLMTVHASKGLEFDCVFIGGMEEGLFPHDNSSS------------- 658

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                 +   EE  RL+YV +TRA  +L +      
Sbjct: 659 ---------------------DRDGLEEERRLMYVAITRARKRLYLSHSQTR 689


>gi|326334139|ref|ZP_08200365.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1]
 gi|325948064|gb|EGD40178.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1]
          Length = 819

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/731 (15%), Positives = 227/731 (31%), Gaps = 144/731 (19%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQ 76
           +   P     ++  NK  +   +     + K+A+ +  ++            +    L  
Sbjct: 83  RGAHPGSILAITFTNKAAAEMKQRVEALVGKRARIMWVSTFHSACVRILRKEIDKVGLKS 142

Query: 77  KFTPQKNIITQ----------EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            F+       +          +++ +     + L    D+  ++RD     K  ++    
Sbjct: 143 NFSIYDAQDQKRLMQLVLSDLDLDPRHYQPGQVLNWVSDQKNELRDVEAAEKDARN--HL 200

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y++  ++   LDF+DLI++T +L +       +R    +   H+L+DE Q
Sbjct: 201 EQTYVAAYKEYQKRLRQANALDFDDLIMSTVELFR---AYPEVREVYRRRFRHVLVDEYQ 257

Query: 187 DTSLIQWEVIRSLTED---------FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
           DT+  Q+ ++  L  D          +  +   S P  L  VGD  QSIY+F GA  + +
Sbjct: 258 DTNHAQYALVHELCADRMDDTALTDSYADEAPRSEPAELMVVGDADQSIYAFRGANIRNI 317

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L  ++             + I L  ++RST  ILT  + V    +  +  +  S      
Sbjct: 318 LDFEQDFP--------DATTILLEQNYRSTQTILTAANAVIKHNKGRKEKALWS------ 363

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                                    N ++       D   +       AR ++  I  ++
Sbjct: 364 ----------------------DAGNGERIVGYVADDERDE-------ARFVSDEIDKLV 394

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                        ++A DI V  R    + +   +                     +   
Sbjct: 395 DGG----------LKAADIAVFYRTNAQSRVFEEVF----IRTGQPYKVVGGVRFYERKE 440

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANC 476
           ++D +A  R + + +D +S   +L +P     +  +  +      +  T +E +QK  + 
Sbjct: 441 VRDALAYLRTLANPDDQVSLRRILNTPKRGIGDRAVACVNALAERDGLTFWEALQKAEDA 500

Query: 477 GISKFQH------VIKYIHELIHIAQFCSPHDFF-TLILGAKKGRQQFISRFGNE---VI 526
                +        +  + EL+ +       D     +L               +    +
Sbjct: 501 PGMATRSLTNIKVFVAMVEELLQMVDAGERADVILETVLDRSGYLASLEESDDPQDETRV 560

Query: 527 DVLDEFLNFTLRNEQNS----------------YSSLQELISELEQYPPTIKRAHSANHN 570
           + L E +        +                    L + +  +     T +     +  
Sbjct: 561 ENLAELVAVAREFSDDPVAAPSADPADVDAGTVEPGLADFLERVALVADTDQIPDDEDG- 619

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V +MT+HTAKGLE P VFL      VF H                              
Sbjct: 620 VVTLMTLHTAKGLEFPAVFLTGMEDGVFPHSRALGDGT---------------------- 657

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  +L I +    S     +       + +   
Sbjct: 658 ------------ELEEERRLAYVGITRAEKRLFISRAVVRSAWGAPSHNPGSRFLDELPV 705

Query: 691 NDERVKKIKLT 701
           +    ++ +  
Sbjct: 706 DLVDWRRTEKE 716


>gi|91774719|ref|YP_544475.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT]
 gi|91708706|gb|ABE48634.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT]
          Length = 731

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/627 (15%), Positives = 207/627 (33%), Gaps = 124/627 (19%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   +   F +L +     + +  K ++ + +N          K+        ++
Sbjct: 103 LRAHHREAELPPTFQILDTA---DQLSAIKRVM-KAMNIDDEKFPP--KQVLGYINSCKE 156

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                    +  +     + +   Y++  ++  V+DF +L++   +LL        IR  
Sbjct: 157 EGLRAYAVDAYDSHSQRMREIFEEYDKQCQREGVVDFAELLLRCYELLSSN---KSIREH 213

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             Q   +IL+DE QDT+ +Q+  ++ L            +   +FAVGD+ QSIY+F GA
Sbjct: 214 YQQRFKYILVDEFQDTNRLQYLWLKLLAG----------TNNCIFAVGDDDQSIYAFRGA 263

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +     +        ++++L  ++RS ++IL   + +     N  G +    
Sbjct: 264 RVGNMRDFEHDFNVQ--------NVVKLEQNYRSHSNILDAANAIIMHNRNRLGKN---- 311

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW                        + +  +    A  I   
Sbjct: 312 -----------------LWTSAGKGE--------------PIRIYEGYNDKDEAVFIVDE 340

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  +              I+   I +L R    + ++            +          
Sbjct: 341 IKALHKEG----------IELSQIALLYRSNAQSRILEHEL----FSAGLPYRVYGGLRF 386

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   +K  +A  R I + +DD + + ++  P        + ++    R +  ++++   
Sbjct: 387 FERAEVKHALAYLRLIANGDDDTALLRVINFPTRGIGARSLEQLQELARQQDSSLWQAAC 446

Query: 472 KFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528
             A  G      +  +  + ++   +   +  +   L       R  + +   G + +  
Sbjct: 447 AKAGDGRPGRGLEGFVALVKQMQEESIGLTLAEQVELATRLSGLRDHYAADKEGEDRLAN 506

Query: 529 LDEFLNFTLRN---------EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
           LDE +N  +           ++N   ++  L   L        +       + +++MTVH
Sbjct: 507 LDELVNAAIAFMNQDIGMPVDENGEVAMSMLAQFLAHASLEAGEHQADVGRDALQLMTVH 566

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGLE   VF+      +F H+                                     
Sbjct: 567 AAKGLEFHTVFISGLEEGLFPHEQS----------------------------------S 592

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIIC 665
            + +  EE  RL+YV +TRA  +L + 
Sbjct: 593 YESNGLEEERRLMYVAVTRARQRLYLS 619


>gi|329118654|ref|ZP_08247358.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465389|gb|EGF11670.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 805

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/643 (15%), Positives = 206/643 (32%), Gaps = 122/643 (18%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++        ++            A Y++  ++  V+DF +L++ + +LL
Sbjct: 217 RTLQGFINAQKESGLRANAIEAPDPHTRRLIECYAEYDKVCQREGVVDFAELMLRSYELL 276

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +                +FAVG
Sbjct: 277 QNNEM---LRRHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNAA----------VFAVG 323

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +                    ++L  ++RS  +IL   + V   
Sbjct: 324 DDDQSIYRFRGAHVGNMAALMNEFHISEP--------VKLEQNYRSVGNILAAANAVIEN 375

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   +++  D      
Sbjct: 376 NDERLGKNL---------------------------RTDAEAGDKIRFFSAPSDFDE--- 405

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A+ +     ++                  +  VL R    + +I           
Sbjct: 406 -----AQFVIEETKSLQREGKSL----------NETAVLYRSNAQSRVIEQAL----FRS 446

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            +           +   IK  +A  R  ++ +DD + + ++  P        I  + T  
Sbjct: 447 GLPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINMPPRGIGARTIENLQTAS 506

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            ET          A    +K    ++ I  L          +  + I+      + + ++
Sbjct: 507 AETGVSLWQAACAAGAKAAKVAAFVRLIENLRTQVGQMPLAEIMSGIVRDSGLVEYYQTQ 566

Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566
            G   + +D LDE +N  +    E++++  L E         +++ L        +    
Sbjct: 567 KGDHQDRLDNLDELVNAAIAFKPEESNFEILPENAAADPAFPILAFLSNAALESGENQAG 626

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
              + V++MTVH AKGLE   VFL       F  +                         
Sbjct: 627 EGEDAVQLMTVHAAKGLEFDTVFLTGMEEGRFPSE------------------------- 661

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                    +   ++   +E  RL+YV +TRA  +L I        ++  + +T + +  
Sbjct: 662 ---------LSLAERGGLQEERRLMYVAITRARKRLYISMAQ----QRMLHGQTQFGVPS 708

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                        L+       +      +  P     +  ++
Sbjct: 709 RFVEEIPPEVLHFLSPHKTATTFADKPRRSDIPAADTYQPAQS 751


>gi|90962321|ref|YP_536237.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
 gi|90821515|gb|ABE00154.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118]
          Length = 744

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/807 (14%), Positives = 236/807 (29%), Gaps = 133/807 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L            
Sbjct: 30  GAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERVNNLMGEGAEDIWVST 89

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L +        ++      +++   +K+ L     +  K   R     +  +
Sbjct: 90  FHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQVLNDLNIDTKKYDPRAILSVISNA 149

Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L               +       Y+     N  +DF+DLI+ T  L  +    + 
Sbjct: 150 KNDLLDPKDYAQQANGPFEEIVSKAYFEYQNQLANNQAMDFDDLIMQTIRLFNES---SE 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 ++ ++I +DE QDT+  Q+E++  L   +          R L  VGD  QSIY 
Sbjct: 207 TLEFYQRKFHYIHVDEYQDTNEAQYELVNKLARKY----------RNLCVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + ++  +              ++I+L  ++RST +IL   + V     N +  +
Sbjct: 257 WRGANMENIMNFEEDYP--------DATVIKLEQNYRSTKNILAAANNVIENNVNRKDKT 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              +  +    ++  +       A  
Sbjct: 309 ---------------------LW-------TDNKQGDKIHYYRANNANEE-------AYY 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   I  +              D  +L R    + +I            I      
Sbjct: 334 VVKKIQEQIRNNGR---------HYGDFAILYRTNAQSRIIEETF----VKTNIPYKLVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I D +A  R + +  D +SF  ++  P  +     + K+    +    ++ 
Sbjct: 381 AHKFYDRKEIMDTLAYLRLVTNPADSMSFERIVNEPKRSIGSVTVGKLRTFSQIHGMSML 440

Query: 468 EYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E  +  A         ++ +   + I +L    +  +  +    IL     +        
Sbjct: 441 EASKSAALAGVSAKASNELEKFAEMIEQLHEYQKAHNVTEVTERILDVTGYKANLQREDT 500

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQE---LISELEQYPPTIKRAH-SANHNEVRIM 575
            E    ++ L+EFL  T + +Q+     +E    +  L        +       +EV +M
Sbjct: 501 LENRNRLENLEEFLTVTKQFDQDWEPEDEESDPFVDFLADLALVSDQDSVEEEPDEVTLM 560

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE PVVFL+     +F                                     
Sbjct: 561 TLHAAKGLEFPVVFLMGLEEGIFPLSRAVMDENELEEERRL------------------- 601

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                           YVG+TRA ++L +    +     KS        + +      + 
Sbjct: 602 ---------------AYVGITRAEEELYLTNSISRMLYGKSQNNPASRFIEEIDEELIQS 646

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
               + ++    +           +        T+++  +     +      K       
Sbjct: 647 DNQTVASTTLTSKRTRSREVPFSKKPKYRMPAGTVERPKETGADKQSWNIGDKISHKAWG 706

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNR 782
                 +   G+     +  + +   R
Sbjct: 707 TGTIVKVSGDGEDTELDIAFEGKGIKR 733


>gi|83951554|ref|ZP_00960286.1| DNA helicase II, putative [Roseovarius nubinhibens ISM]
 gi|83836560|gb|EAP75857.1| DNA helicase II, putative [Roseovarius nubinhibens ISM]
          Length = 782

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/636 (17%), Positives = 197/636 (30%), Gaps = 121/636 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   ++   +DF DL+++   + +       I  +  +   +IL+DE QDT++ 
Sbjct: 195 ALYTLYQTRLRELNAVDFGDLLLHMVVIFQSH---QDILDRYQRWFRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L           S  R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLA----------SGHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RSTA IL     V +  +   G                      +LW
Sbjct: 296 --GAHVVRLEQNYRSTAHILAAASGVIAGNKGRLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++     ++D   +       AR I   I +M            R I
Sbjct: 333 -------TEAEGGEKVRLIGHWDGEEE-------ARWIGEEIDSMQRG-----TRGMRPI 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + L I+D MA  R ++S 
Sbjct: 374 GLDDMAILVRASHQMRAFEDRF----LTIGMPYRVIGGPRFYERLEIRDAMAYFRLVVSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE------YIQKFANCGISKFQHV 484
            DDL+F  ++ +P     +    KI  T R  +  + E        +     G ++    
Sbjct: 430 SDDLAFERVVNTPKRGLGDKAQQKIQMTARENSVPLLEGARILLEQKGLGGKGGAELGRF 489

Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           ++ I     +   +  S  +   +IL      + + +    E    ++ L E +    + 
Sbjct: 490 VENITRWGRMVGDEAISHIELAEMILDESGYTEMWQNDKTPEAPGRLENLKELVKALEQF 549

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +         +V IMT+H AKGLE P VFL      +F 
Sbjct: 550 EN--------LQGFLEHVSLIMDNEQEEAGEKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 601

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 602 SQRS--------------------------------MDESGLKGVEEERRLAYVGITRAE 629

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +   I      +  ++   +    M               LT                  
Sbjct: 630 EICTIS----FAGNRRVFGQWQSQMPSRFIDELPEEHVEVLTPPGLYGGGYGAAGMGVTG 685

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
           +                +++  +      +   E  
Sbjct: 686 DIESRVAAADGYNSPGWRRLQARASERPISQPRESK 721


>gi|153806585|ref|ZP_01959253.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185]
 gi|149131262|gb|EDM22468.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185]
          Length = 817

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/611 (15%), Positives = 191/611 (31%), Gaps = 121/611 (19%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y E  +    +DF+DL++ T  L +       +  +   +  ++L+D
Sbjct: 197 AAKMPAIRDIYTRYWERCRWAGAMDFDDLLVYTYILFRDFPD---VLARYRDQFRYVLVD 253

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +I
Sbjct: 254 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKI 303

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E     +  S            
Sbjct: 304 YP--------DTKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 343

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +A  I+ +       
Sbjct: 344 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 376

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      +  +L R    + +     R       +               IKD++A
Sbjct: 377 -----FRYGYAEFAILYRTNAQSRVFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 427

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI +       +++  + +          
Sbjct: 428 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATDNGVSLWAALCEPLSYGLNINK 487

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +K Q   + I   I      + ++  T I+               E     + ++E 
Sbjct: 488 GTHAKLQGFRELIEGFITGQADKNAYEIGTDIIRRSGIINDVCQDTSPENLSRKENIEEL 547

Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N         + E N   SL + +SE+           + +  ++ +MTVH+AKGLE  
Sbjct: 548 VNGMNDFCALRQEEGNPNISLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSAKGLEFK 606

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F                                              EE
Sbjct: 607 NVFVVGLEENLFPSGMAGDSP----------------------------------RALEE 632

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   +          K    +    + D   +  ++      +    
Sbjct: 633 ERRLFYVAITRAEEHCYLSFAKTRFRYGKMEFGSPSRFLRDIDVHYLQLPHEAGVSRSVD 692

Query: 707 DEWIAYEWSTH 717
           +    +     
Sbjct: 693 EGAGRFRREIE 703


>gi|158317729|ref|YP_001510237.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec]
 gi|158113134|gb|ABW15331.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec]
          Length = 851

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/710 (14%), Positives = 203/710 (28%), Gaps = 142/710 (20%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
              +  L   +   ++E +      +     ++T         + A Y++   +   LDF
Sbjct: 197 RHTARGLAAAISALKNELVDWETARD-----RATNHIERTVAEVYAAYQQRLTQANALDF 251

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+ T +LL+       +     +   H+L+DE QDT+  Q+ +IR L        + 
Sbjct: 252 DDLIMTTVNLLQ---AFPDVAEHYRRRFRHVLVDEYQDTNHAQYVLIRELVGRSASSADE 308

Query: 210 HSSPR-------------------------------TLFAVGDEKQSIYSFHGAEPKRVL 238
            ++                                  L  VGD  QSIY+F GA  + ++
Sbjct: 309 PAAGSGEAVYSGGSAEPDGAGWPAKAVPPSGAVPSAELCVVGDADQSIYAFRGANIRNIV 368

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             ++             ++I L  ++RST  IL+  + V +     +     S       
Sbjct: 369 EFEQDFPN--------AAVILLEQNYRSTQTILSAANAVIARNAQRKPKRLWS------- 413

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                   + ++       +   +       A  +A  I  +  
Sbjct: 414 ---------------------DAGDGERIVGFVADNEHDE-------AAFVAEEIDRL-- 443

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                  G + + +  D+ V  R    + +   +         +           +   I
Sbjct: 444 -------GDENLARPADVAVFYRTNAQSRVFEEIF----IRVGLPYRVVGGVRFYERREI 492

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQ 471
           +DL+A  R +++  D ++   +L  P     +     +          +       + + 
Sbjct: 493 RDLLAYLRVLVNPTDTVNLRRILNVPRRGIGDRAEAMVSAFAERERIAFSEALSRVDEVP 552

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DV 528
             A       +  +  +  L                L       + ++    E     + 
Sbjct: 553 GVATRSARSIRDFVALLEGLREQLPAGPL-AVIEATLERTGYLSELVAEDTIEAQGRVEN 611

Query: 529 LDEFLNFTLRN-EQNSYSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           L E +       E+    +L E + ++              +   V +MT+H+AKGLE P
Sbjct: 612 LRELVGVVQEFTERRPDGTLAEFLEQVALVADADQIPDDDGSDGVVTLMTLHSAKGLEFP 671

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VVFL      VF H                                            EE
Sbjct: 672 VVFLTGLEDGVFPHMRTLGDPTG----------------------------------LEE 697

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YVG+TRA  +L + +    S   +         + +   +    +++        
Sbjct: 698 ERRLAYVGVTRARARLYLTRSQVRSAWGQPAYNPPSRFLGEVPDSLVEWRRLPEPAPAAG 757

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
               +   S      +     +        +         I+    +   
Sbjct: 758 GGRFSGGGSAGAGNGSGGSGGKLPSSPFGAKPSRPAARPIIELTPGDRVT 807


>gi|160872666|ref|ZP_02062798.1| UvrD/REP helicase [Rickettsiella grylli]
 gi|159121465|gb|EDP46803.1| UvrD/REP helicase [Rickettsiella grylli]
          Length = 1135

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 161/979 (16%), Positives = 317/979 (32%), Gaps = 140/979 (14%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER-- 65
            S ++  + + + LW L    V  +N+ ++         +L  +   +Q S  +  ++   
Sbjct: 212  SPDDLRKTLEQSLWDLNQNNVKQLNQLINPHDAQKLLKLLNFSLQQRQRSPLKRHDDLTF 271

Query: 66   FSLLSSFFLTQKFTPQKNIITQ-----EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
            ++  S   LT + T ++ +        +   K+  LK ++ + + + + +    +     
Sbjct: 272  WNAASHLVLTAQDTFRQRLGKAEGFTIDATSKNKILKTEINRLKSQLLDLIHDLSQQPGV 331

Query: 121  KST--------------------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
            K T                     +   L   L AH +   ++   +D  ++++     L
Sbjct: 332  KETFIALKHAPPSHYTETQWKILKSLFELLPVLVAHLKIVFQQQKKVDHTEVLLAACSAL 391

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
               +    +   +D  I H+L+DE QDTS +Q  +I  L   +          RTLF VG
Sbjct: 392  GHPENPTDLALALDYHIQHLLVDEFQDTSPLQLRLIEKLITGW-----EKQDGRTLFLVG 446

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D  QSIY F  AE    L  ++               + L ++FRST+ I+  V+  FS 
Sbjct: 447  DPMQSIYRFRKAEVCLFLEVRQR-----GIGSFPLQPLTLRVNFRSTSGIVDWVNHSFSQ 501

Query: 281  ----PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
                  N    +   + +  +  S   +      W+        +               
Sbjct: 502  LLPDNPNRSIDAIGYSPSDAYTCSSQAEKSVFTYWQLAEDSVLGEIAE------------ 549

Query: 337  PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                     A +I  TI  +   D               I +LVR R     I    R  
Sbjct: 550  ---------AEQIVTTIQKIKREDPS-----------GSIALLVRSRSHLHPILPRLRQA 589

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
            K    I     +   L +  A++DL++L R +    D +S++ +L+SP    S  D+++I
Sbjct: 590  K----IPYQALEIDSLAEKSALQDLLSLTRALHHFGDSISWLALLRSPYCGLSLRDLYQI 645

Query: 457  CTQRHETE--TVYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                 + +  T++E +++F           + + ++  +   +      S   +      
Sbjct: 646  IQWNDKNKKTTIWEQLKEFEKIPLSLKTKQRLRRIVPVLKYSLQQQGRVSFPQWVKQTWL 705

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
               G          E +D ++ + NF     +    S  + +   E+      ++ S + 
Sbjct: 706  YLGGPTTLSH---WEEMDDIETYFNFLATKLKTEGDSF-DFLRIHEELQTLYTQSTSHDT 761

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSK 626
            + V+IMT+H AKGLE   V L           +   ++            +  P     +
Sbjct: 762  HAVQIMTLHKAKGLEFDHVILPGLHRSNRPEPYPLLLYSEQRSVLHQKNFLLAPIPIDPQ 821

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
              + I + L+   +K  Q E  RLLYV  TR    L +       +  K        +++
Sbjct: 822  EPDLIYNYLLAEEQKKNQAERIRLLYVACTRTKKSLHLFGTFTQDSAGKLQSPDKQSLLH 881

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
              +                    ++          T    +             K    P
Sbjct: 882  HLWPILSIKS--------EHLLSVSKSRVNQKNSTTQTVLKRLPATWQSPVSPMKSFEIP 933

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR----- 801
                         S  +                   G +IH+LL  I             
Sbjct: 934  TTMPSQPVVYHWHSHTE----------------RIFGTVIHRLLYQISQDGLEHWIKKIN 977

Query: 802  --KNFITSYCTKNAKLWPA--KEYKNLLLSITRLLENPMMTTAMSCDSY---SEVSVSGK 854
              +  +         L          L   + +++  P     +S   +   SE +++  
Sbjct: 978  QSQTLLAGLLAHYGLLDSEIPNVLITLKRCLEKVIACPRARWILSQQHWMAESEYAITVI 1037

Query: 855  INCPKKDIIISGRIDQISISQQN--IFIFEYKT----HHHVPQEIEHIPYTHIAQLSIYE 908
            ++   ++      ID+  I       +I +YKT     +     ++     H  QL+ Y 
Sbjct: 1038 LHGKCENF----IIDRTFIDPATCSRWIIDYKTTNYQGNQPDLFLKEAKQRHQEQLNGYA 1093

Query: 909  KILKDSYPN-KSLVCLLIY 926
            +     +   K + C L +
Sbjct: 1094 RAF--LHDKPKKICCGLYF 1110


>gi|161829860|ref|YP_001595927.1| DNA-dependent helicase II [Coxiella burnetii RSA 331]
 gi|161761727|gb|ABX77369.1| DNA helicase II [Coxiella burnetii RSA 331]
          Length = 720

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/579 (18%), Positives = 188/579 (32%), Gaps = 115/579 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE+  +++ ++DF          L+    SA +R    Q   HIL+DE QDT+ IQ
Sbjct: 174 VYKAYEDVCRQSGLVDFA---ELLLRTLELLRDSATLREHYQQRFQHILVDEFQDTNTIQ 230

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +++L  +  V            AVGD+ QSIYS+ GA+ + +    R          
Sbjct: 231 YAWLKALAGEQTV----------FMAVGDDDQSIYSWRGAKIENIHHFSRDF-------- 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL   + V    +N  G                       LW 
Sbjct: 273 AGVKTIRLEQNYRSTQTILDAANAVIDNNKNRFGKK---------------------LW- 310

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +  +  + F+   +       A  +   I   +               
Sbjct: 311 ------TDSPTGEPITLYTAFNERDE-------AFYVISCIDAWVRQGH----------S 347

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D+ +L R    + L          D +I           +   IKD +A  R + ++ 
Sbjct: 348 YNDVAILYRSNAQSRLFEECL----IDRQIPYRIYGGLKFFERAEIKDALAYLRLMANRN 403

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++  P        +  +  T R    ++++  Q            ++  QH I
Sbjct: 404 DDAAFERVVNVPTRGIGNTTLVALRTTARDHAVSLWQATQHLITNQTLNARALNALQHFI 463

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQN 542
           + +  L    +     +    +L        +       G   ++ L+E +N T +    
Sbjct: 464 ELVDRLQDETKNLPLAEQTEKMLMGSGLLALYKKDNSEKGLSRVENLEELINATSQFTPR 523

Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              +L  L + L           ++ H + V +MT+H AKGLE P+V +      +F H+
Sbjct: 524 DDLALSPLDAFLSHVALETGEEQASAHSDCVTLMTLHAAKGLEFPLVIISGLEEDLFPHR 583

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                   +  EE  RL YVGMTRA ++
Sbjct: 584 MSID----------------------------------AANGLEEERRLCYVGMTRAREK 609

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           LI+    +               + +         +   
Sbjct: 610 LILTYTESRRLHGLEKFNQPSRFIQEIPPELIDAVRPTP 648


>gi|298530047|ref|ZP_07017449.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509421|gb|EFI33325.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1142

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 141/968 (14%), Positives = 312/968 (32%), Gaps = 129/968 (13%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK-KAQTLQQASQT-----QCIEERF 66
             E + +    +P  ++  I +    +         K   + L           +      
Sbjct: 230  EEELKEVSRLMPLEELPRIARLAGFAASNLQDEDQKSTLERLAGLDSLPGCNCRDHPAWL 289

Query: 67   SLLSSFFLTQKFTPQKNI-----ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
              L+ F LT+  T ++              + P+LK +L++ + +F             +
Sbjct: 290  D-LARFCLTKGGTIRRTADKSLGFPAPSGTRDPELKVRLEEMKAQFKACMQTLACIPGLE 348

Query: 122  S--------------------TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                                   A   + +   A  +   +    +DF ++       L 
Sbjct: 349  MRLQEVRLLPGTTYSGSQWQTLEALFDVLRLAAACLQLEFQDQGSVDFTEITTRARQALG 408

Query: 162  KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
              +    +   +D  I H+L+DE QDTS+ Q++++ +LT  +  G       RT FAVGD
Sbjct: 409  TDEDPTDLALVLDSRIQHLLMDEFQDTSISQYQLLLALTAGWTPGDG-----RTFFAVGD 463

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
              QSIY F  AE    L+ +                + L ++FRS A I+   ++ F  P
Sbjct: 464  PMQSIYGFREAEVGLFLQARSQ-----GLDHIPLEPLRLTVNFRSQAGIVDWANQAF--P 516

Query: 282  ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                 + +  T ++ +  S            QV    D+   P+                
Sbjct: 517  RVLPEVEDQMTGSVPYSGSHAFLPPLEDPAVQVHPFFDADFQPE---------------- 560

Query: 342  ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                    +  I +++        G         + +LVR R          R       
Sbjct: 561  --------SSRIVSLVQQARQEDPG-------GTVAILVRSRPHLQAALPALR----QSG 601

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            +     +   L+    I+DL +L R +     +L+++ +L++P      +D+  +   + 
Sbjct: 602  LEYQAVEIDPLSRRPVIQDLCSLARALTHPGHNLAWLAVLRAPWCGLDLEDLAILAADKD 661

Query: 462  ----ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                      + +   +  G  +   V + + + +   Q             A  G    
Sbjct: 662  AFIVNRIQDQDILSSLSPQGRRRLDRVREILLKFLQQRQRSGLRSQVESCWKALGGPDCL 721

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMT 576
             S+      DV    L   L +      S   ++ ELE           ++   ++++MT
Sbjct: 722  HSQSQRRDADVFFRLLQQRLEH------SPHRVVDELENAVAGLYAGPDTSAGQDLQVMT 775

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ---SKSRNNIVS 633
            +H AKGLE   V +   G    S ++   + +  +        +  P+    + ++ + +
Sbjct: 776  IHKAKGLEFDTVIIPGLGRAPGSDENPLLVWMERTSPRGHTDLLMAPKTATGEDKDPVYA 835

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
             + + + + T  E  RLLYV  TRA  +L +  H+  + +   ++     ++   +   +
Sbjct: 836  YIQRLMARKTSHEDGRLLYVACTRARKRLHLLGHTGLTEKGLPSKPAGGSLLESLWPAVK 895

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                              +E +   P +    REE             + + P +     
Sbjct: 896  D----------------EFERAAATPRDDADTREEHGASAGQTLYRLHQDWQPPRLPAGI 939

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-----QVIFTLPEHKRKNF---- 804
                + S  D   ++ +     +      G  +H+ +     + I      K +      
Sbjct: 940  TTP-SDSRPDPGQESIVFDWAGETIRLA-GTCVHRWMLTMAEEGIHKWSVKKIRGLKSVF 997

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                          +E  +L+       L +      +     +       ++       
Sbjct: 998  ARQLMDLGMLEKSLEEGVDLVQQALENTLNHDTGRWILGPRQRA--RNEYALSGLDNGQA 1055

Query: 864  ISGRIDQISISQQNI-FIFEYK----THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            ++  +D+  +    + +I +YK    +   V + ++     +  ++  Y ++++ + P  
Sbjct: 1056 VAVSMDRTFVDDAGLRWIIDYKISRHSGKDVQRFLDQEQARYQERMQTYARLMQAAEPG- 1114

Query: 919  SLVCLLIY 926
             +   L +
Sbjct: 1115 PVELGLYF 1122


>gi|257054559|ref|YP_003132391.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM
           43017]
 gi|256584431|gb|ACU95564.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM
           43017]
          Length = 817

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/622 (16%), Positives = 173/622 (27%), Gaps = 142/622 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A      Y+    +   LDF+DLI  T +L +       +     +   H+L+DE QD
Sbjct: 184 RRAAEAYREYQNRLAQANALDFDDLIARTVELFQ---AFPDVAEHYRRRFRHVLVDEYQD 240

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +IR L            S   L  VGD  QSIY+F GA  + +   +R     
Sbjct: 241 TNHAQYTLIRELVGTGPTESGLPPSE--LCVVGDADQSIYAFRGATIRNIEEFERDFP-- 296

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL+  + V S     +                      
Sbjct: 297 ------DARTILLEQNYRSTQTILSAANAVISRNPGRREKR------------------- 331

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW       D+    +   + +         S    A  +A  I  ++          
Sbjct: 332 --LW------TDAGQGERIVGYVA--------DSEHDEAAFVAEEIDALVDRGE------ 369

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D+ V  R    + +   +         +           +   +KD +A  R 
Sbjct: 370 ---AKYSDVAVFYRTNNQSRVFEEIF----IRLGLPYRVVGGVRFYERKEVKDALAYLRV 422

Query: 428 ILSQEDDLSFVCMLKSPLFNFS---------EDDIFKICTQRHETETVYEYIQKFANCGI 478
           + + ED +S   +L  P                +  +I       + V   I        
Sbjct: 423 LANPEDTVSLRRILNVPKRGIGERAEAVVATHAERERISFASALRDAVAGRIPLLNPRSQ 482

Query: 479 SKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
                 ++ I  L  +    +   D    +L     R +       +    ++ LDE + 
Sbjct: 483 KAITAFVELIDGLRELVDEGTDVADVLEAVLDRTGYRAELEGSDDPQDASRLENLDELVT 542

Query: 535 FTLRN--------------------------EQNSYSSLQELISELEQYPPTIKR----- 563
                                          +     SL   +  +              
Sbjct: 543 VAREFTEFARSVGEDTGTSEDTDVATDFEDADVAEPGSLSAFLERVSLVADADSVPSPDG 602

Query: 564 ---AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                +     V +MTVHTAKGLE PVVF       VF H                    
Sbjct: 603 EGADEADEDGVVTLMTVHTAKGLEYPVVFCTGWEDGVFPHLRALGEP------------- 649

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                    E  RL YV +TRA  +L + +    +   +     
Sbjct: 650 ---------------------KELAEERRLAYVAITRAQRRLYVSRALVRNAWGQPMSNP 688

Query: 681 WYDMVYDSFHNDERVKKIKLTN 702
               + +        +++  + 
Sbjct: 689 ASRFLDEIPAELVDWRRLAPSG 710


>gi|258406095|ref|YP_003198837.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798322|gb|ACV69259.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 1132

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 144/971 (14%), Positives = 301/971 (30%), Gaps = 135/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSL 68
            + +   +          ++ ++ +Y + ++E    T+L     +++           +  
Sbjct: 225  SRALAELTVFFGDERGEELLELLRYAAANLERDGKTLLANCLGVEEFPDPDPAALPFWRD 284

Query: 69   LSSFFLTQKFTPQKNIIT--------------QEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            +  F LT     +K++                +   K S +  + L     +   + +  
Sbjct: 285  VCDFLLTDSNQWRKSVTKGLGFPAPSSVGTAQKAQAKDSKERWQSLVADLADEEGLLETL 344

Query: 115  NTYKMFKS----------TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
               +                A L + K   A      +    +DF ++ +     L +  
Sbjct: 345  QMVRGLPEGNYSDAQWTVLQALLAVLKLATAQLLLVFQGAGEVDFIEIGMQARHALGEPQ 404

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                +   +D  I HIL+DE QDTS+ Q+E++  L   +          RT F VGD  Q
Sbjct: 405  APTDLALSLDYRIQHILMDEFQDTSVTQFELLERLVAGW-----QPDDGRTFFGVGDPMQ 459

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            SIY F  AE    L+       R          + L ++FRS A ++  V+ VF      
Sbjct: 460  SIYRFREAEVGLFLQA-----ARNGIGDIPLEPLVLSVNFRSQAGVVNWVNAVFPDVM-- 512

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                                    +     V    SQ      +  +      + ++ + 
Sbjct: 513  --------------------PTQPEAMTGAVPYTPSQTIRAANAEHAVSVHPRRAANEAA 552

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A  +A +I   + T                I VL R       I    R       I  
Sbjct: 553  EAEEVAASIQTTLETVPQHER----------IAVLARAANHLVPIVQRLR----RDGIPF 598

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
               D   + +   + DL+AL R +    D L+++ +L++P    S  D+      +  + 
Sbjct: 599  QAVDIDPVIEKPVVSDLLALTRALARPADRLAWLAVLRAPWCGLSAGDL--CTVAQECSG 656

Query: 465  TVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
             ++  ++              + Q V+  +  ++   ++ + +    +   A  G     
Sbjct: 657  PLWPALEGAVQEQTVSASGQHRLQRVVGSLRPVLEQREYIAFYKGVEMAWHALGGPACLT 716

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 E   V  E L            S +E+   L       +         V++MT+H
Sbjct: 717  DADEQEAARVFFELLRHLST--GGRTPSPEEVEEGLANLRARPEPD---GAARVQLMTIH 771

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI---WIPQSKSRNNIVSDL 635
             AKGLE   V +   G           M      +      +     P           +
Sbjct: 772  KAKGLEFETVIIPGLGRGTPPVDRRLLMWQEVPRDTGGEDLLLAPVPPTGGKPEATYRYI 831

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
             +  K  T+ E  R+LYV +TRA ++L +   +    +      +               
Sbjct: 832  QQLEKTKTRLEEGRVLYVAVTRARERLHLFGAAKQRADGTLAPVS--------------- 876

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                   S+ +  W   +      +    ++E    +      + +   +     +  P 
Sbjct: 877  ------GSLLELLWPHVKDRFEACQGAAEDQEGVQPEAQQGYWLRRLPANWEVPAV--PV 928

Query: 756  ILNPSTIDTKGKTNLESLLSDNQT---FNRGLIIHKLL--------QVIFTLPEHKRKNF 804
             +  S    +G++ +E    D         G +IH+ L        Q        + +  
Sbjct: 929  RVGGSARGVEGQSRVERPEFDWAGRTVRRIGTVIHRWLMRVAQETEQHWHERSLARCREA 988

Query: 805  ITSYCTKNAKLWPA--KEYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKK 860
                      + P        +  ++ ++L +      ++  S    E  ++G ++    
Sbjct: 989  FRRDLVGEGVVGPELSAAVDRVEQALAQILSDRRGQWLLASHSEARCEYPLTGALDGELH 1048

Query: 861  DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHI----PYTHIAQLSIYEKILKDSY 915
             +++    D+  +      +I +YK   H   ++E         +  QL  Y +++   +
Sbjct: 1049 SVVL----DRTFVDGQGQRWIVDYKAGRHSGSDLEAFLDREQERYREQLETYARLVA-LW 1103

Query: 916  PNKSLVCLLIY 926
              + +   L +
Sbjct: 1104 EKRPIRLGLYF 1114


>gi|314914443|gb|EFS78274.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA4]
          Length = 810

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +    LDF+DLI+ T  +L++      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  + + I +        +    IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +   +  
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYTPPSRFIDEIPEHLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|300782729|ref|YP_003763020.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
           mediterranei U32]
 gi|299792243|gb|ADJ42618.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis
           mediterranei U32]
          Length = 804

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/750 (15%), Positives = 217/750 (28%), Gaps = 143/750 (19%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL------LSS 71
           + + P     ++  NK  +   E     + ++A  +  ++                 +SS
Sbjct: 68  RRVHPGEIMAITFTNKAAAEMRERVAALVGRRANAMWVSTFHSMCVRILRREAKVLDMSS 127

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKSTL--ASLT 128
            F        K +IT        D K    +        +++     +   +        
Sbjct: 128 SFSIYDSDDTKRLITLVARDLDIDPKRYAARTLAVHISNLKNELTDPETAAANAGNDLER 187

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               +   Y+    +    DF+DLI+ T  LL+       +     +   H+L+DE QDT
Sbjct: 188 RVAEVYGEYQRRLNQANAFDFDDLIMRTVSLLQTFPD---VAEYYRRRFRHVLVDEYQDT 244

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ ++R L             P  L  VGD  QSIY+F GA  + +   +R      
Sbjct: 245 NHAQYTLVRELAG--TAPNEAGVEPAELVVVGDADQSIYAFRGATIRNIEEFERDFPN-- 300

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I L  ++RST  IL   + V     N +                       
Sbjct: 301 ------AHTILLEQNYRSTQTILNAANAVIERNPNRRAKR-------------------- 334

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW       DS    +   + +  D           A  +A  I  +            
Sbjct: 335 -LW------TDSGDGEKIVGYVADNDHDE--------AAFVAGEIDALAEKGE------- 372

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 D+ V  R    + +   +         +           +   ++D++A  R +
Sbjct: 373 --ADYSDVAVFYRTNNQSRVFEEIF----IRLGLPYKVVGGVRFYERREVRDMIAYLRVL 426

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK--------FANCGIS 479
            + ED +S   +L  P     +     +      E  +  + ++              + 
Sbjct: 427 ANPEDTVSLRRVLNVPKRGIGDRAEAVVATHAERERISFAQALRDAVEGKVPLLNPRSVK 486

Query: 480 KFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                +  + EL  + A     HD    +L     R +       +    ++ LDE +  
Sbjct: 487 AIGGFVAMLDELGMLVADGAEVHDVLEAVLDKTGYRIELEESEDPQDHTRVENLDELVTV 546

Query: 536 TLRNE----------------QNSYSSLQELISELEQYPPTIKRAHSANHNE-------- 571
                                ++   +   L + LE+           + +         
Sbjct: 547 AREFTEITAEVAADENAEPVVEDGVPAPGSLPAFLERVSLVADADSVPSPDGGEEGDGGA 606

Query: 572 --VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             V +MTVHTAKGLE PVVF       VF H                             
Sbjct: 607 GVVTLMTVHTAKGLEYPVVFCTGWEDGVFPHMRALGDP---------------------- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                       +   E  RL YV +TRA  +L + +    S   + +       + +  
Sbjct: 645 ------------AELAEERRLAYVAITRARKRLYVSRAITRSAWGQPSMNPASRFLDELP 692

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +    ++++ ++S           +    
Sbjct: 693 PDLVDWRRLEPSSSGFGSFGSGSRGTPRAA 722


>gi|320527942|ref|ZP_08029108.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei
           F0204]
 gi|320131568|gb|EFW24132.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei
           F0204]
          Length = 743

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/694 (16%), Positives = 215/694 (30%), Gaps = 132/694 (19%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           L+   G    ++  L  + +  +    V                 + ++ + +  +  + 
Sbjct: 40  LRIIAGAGSGKTRVLTMRIVHLIEDEDVWPTKILAITFTNKAANEMKERVRNMLASQTSA 99

Query: 61  CIEERFSLLSSFFLTQK----FTPQ-----KNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
                   L    L +       P+          + + K++  L + +  +   +  + 
Sbjct: 100 PWVSTIHSLCVRILREDIIAMGYPRNFTIMDTEDQKSVLKEAYKL-QGIDATTYSYSSML 158

Query: 112 DRFNTYKMFKST-LASLTLA---------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
           D     K    T   +L LA           +   Y++ ++    LDF+DLI+ T  +  
Sbjct: 159 DYIANNKTADITPERALVLAGDYHADKVKAEVYTFYDKRQRDLYALDFDDLILWTVRMFA 218

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           K      I  K  +  N+IL+DE QD    Q+E+I  +T               L  VGD
Sbjct: 219 KFPE---ILEKWQRHFNYILVDEFQDIDKKQYELINQITG----------PMNNLLVVGD 265

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q+IY++ GA+   ++   +   +           I L  ++RS   IL   + V    
Sbjct: 266 PDQTIYTWRGADVNIIMNFAKDYPQ--------AKTIILNENYRSVEAILNGANSVIKNN 317

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           +        +                               + +   +++  D       
Sbjct: 318 KYRVDKELFTNRH---------------------------SDEKITHYSAASDE------ 344

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               A  IA  IS++                  DI +L R    +  +         D +
Sbjct: 345 --YQAAWIASKISSLHREGK----------SYHDIAILYRSNYLSRSLEKAL----LDER 388

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QR 460
           I  +        +   +KD +   R + +  DDL+   +L  P        +  I    R
Sbjct: 389 IPYIIYGGTRFYERQEVKDALCYLRMVTT-ADDLALQRILNRPKRGIGNKTMDLIVETAR 447

Query: 461 HETETVYEYIQK---FANCGISKFQHVIKYIHELIHIAQFCSP--HDFFTLILGAKKGRQ 515
               ++YE ++    F+   ++  ++ +  +      A          F  I+     R 
Sbjct: 448 ARNTSMYEVLKDSSLFSGKMLTTMENFVNMVESWRKRANSGEVEIFKLFEKIIEESGYRA 507

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                   + I+ L E ++      +    S   L   L+       R  +   + V++M
Sbjct: 508 MLEEAKEQDRIENLKELIDDVKEFSETYPES--TLDEYLQLVSLYGDREETLASDFVQLM 565

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH AKGLE   VF+ D    +F ++                                  
Sbjct: 566 TVHAAKGLEFDTVFISDMNEGIFPNERAVN------------------------------ 595

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                    EE  RL YV  TRA ++L + +   
Sbjct: 596 ---ESHRGVEEERRLAYVAFTRARNKLYLTEAGG 626


>gi|254383079|ref|ZP_04998433.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1]
 gi|194341978|gb|EDX22944.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1]
          Length = 847

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 123/721 (17%), Positives = 225/721 (31%), Gaps = 145/721 (20%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P      VS  +      +   +  +         +       +  
Sbjct: 125 AAGEMRERVEGLVGPRANAMWVSTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 179

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P+K    +  N K  +LK +L                   F+ T   
Sbjct: 180 RLMALVCRDMDLDPKK-FPPKAFNAKISNLKNEL------IDDEAFAAQAVDGFEKT--- 229

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+D+I+ T  LL+       +     +   H+L+DE Q
Sbjct: 230 ---LAQAYALYQGRLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 283

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L             P  L  VGD  QSIY+F GA  + +L+ +     
Sbjct: 284 DTNHAQYTLVRELVG----TGYPDLPPAELCVVGDADQSIYAFRGATIRNILQFEEDY-- 337

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                 +  + I L  ++RST  IL+  + V    EN +  +                  
Sbjct: 338 ------KDATTILLEQNYRSTQTILSAANAVIERNENRRAKN------------------ 373

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW       ++        + +  +           A+ +A  I  +   D      
Sbjct: 374 ---LW------TEAGSGAVITGYVADTEHDE--------AQFVADEIDRLTDAD------ 410

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +A D+ +  R    + +   +         +           +   ++D++A  R
Sbjct: 411 ---DAKAGDVAIFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 463

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--H 483
            + + ED++    +L  P     E     I      E  T  + +++         +  +
Sbjct: 464 VLANPEDNVPLRRILNVPKRGIGERAEAMIDALAMREKITFPQALRRVDEAFGMAARSTN 523

Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
            +K  + L+   +        P      +L       +  +    +    I+ L E    
Sbjct: 524 AVKRFNVLMEELRTIVDSGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 583

Query: 536 TLRNEQN----------------SYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTV 577
            L  EQ                    +L E + +  L      I    +     + +MT+
Sbjct: 584 ALEFEQARATAAAEAAENGAPPVGPGTLSEFLEQVALVADSDQIPDEDTEGTGVITLMTL 643

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           HTAKGLE PVVFL      VF H                                     
Sbjct: 644 HTAKGLEFPVVFLTGMEDGVFPHMRSLG-------------------------------- 671

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             +    EE  RL YVG+TRA ++L + + S  S     +       + +      + K+
Sbjct: 672 --QTKELEEERRLAYVGITRARERLYLTRSSMRSAWGTPSYNPPSRFLEEIPAEYLQWKR 729

Query: 698 I 698
            
Sbjct: 730 T 730


>gi|256113967|ref|ZP_05454750.1| DNA helicase II [Brucella melitensis bv. 3 str. Ether]
 gi|265995308|ref|ZP_06107865.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether]
 gi|262766421|gb|EEZ12210.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether]
          Length = 858

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 196/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA + L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKNNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|261400922|ref|ZP_05987047.1| DNA helicase II [Neisseria lactamica ATCC 23970]
 gi|269209154|gb|EEZ75609.1| DNA helicase II [Neisseria lactamica ATCC 23970]
          Length = 735

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/582 (16%), Positives = 190/582 (32%), Gaps = 118/582 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++  ++  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +  +             +FAVG
Sbjct: 204 QSNEM---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A+ I      +                  +I VL R    + +I           
Sbjct: 333 -----AQFIVDETKALEREGRNLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IK  +A  R  ++ +DD + + ++  P        +  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            E           A    +K    ++ I    +        +    IL      + + ++
Sbjct: 434 QEQGVSLWQAACNAGAKAAKVAAFVRLIEAFRNQVGQMPLPEIIVGILKDSGLTEYYKTQ 493

Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566
            G   + +D LDE +N  +    E +++  L +         +++ L        +    
Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFEILPDNISDDPAFPILAFLSNAALESGENQAG 553

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A    V++MTVH AKGLE   VFL       F  +                         
Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                        ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|41406991|ref|NP_959827.1| hypothetical protein MAP0893 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395342|gb|AAS03210.1| UvrD [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 774

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/749 (14%), Positives = 207/749 (27%), Gaps = 141/749 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + +    +     +        +            + L         ++   
Sbjct: 77  AAAEMRERVVR---LVGNRARAMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRR 133

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + D          +    
Sbjct: 134 LLQMIGRDMGLDI-KRYSPRLLANAISNLKNELIDPAAAVANLTD---------GSDELS 183

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 184 RTVASVYGEYQRRLRAANALDFDDLIGETVAVLR---AFPQIAQHYRRRFRHVLVDEYQD 240

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L             P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 241 TNHAQYVLVRELVG---TDTEDGVPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 295

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I L  ++RST +IL+  + V +     +                      
Sbjct: 296 ------DATTILLEQNYRSTQNILSAANSVIARNSGRRDKR------------------- 330

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 331 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAQKGE------ 368

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +     +         I           +   I+D++A  R 
Sbjct: 369 ---ITYNDVAVFYRTNNSSRSFEEVF----IRAGIPYKVVGGVRFYERKEIRDIIAYLRV 421

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIK 486
           + +  D +S   +L +P     +     +     +   +  + +   A   +       +
Sbjct: 422 LDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNSRAE 481

Query: 487 Y-------IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                   + + +         D    +L     R++  S    +    +D L+E ++  
Sbjct: 482 KAIAGFVELLDDLRGRLDDDLGDLVESVLERTGYRRELESSTDPQELARLDNLNELVSVA 541

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRA--------------------HSANHNEVRIMT 576
                   ++   L   L+                                    V +MT
Sbjct: 542 HEF-STDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTLMT 600

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +HTAKGLE PVVF+      +F H       +                            
Sbjct: 601 LHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPV---------------------------- 632

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                    E  RL YVG+TRA  +L + +    S+  +         + +        +
Sbjct: 633 ------ELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLNPESRFLREIPQELIEWR 686

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725
           +     S +     A  + T     T   
Sbjct: 687 RTAPAPSFSAPVSGAGRFGTPRAAPTRAA 715


>gi|254719445|ref|ZP_05181256.1| ATP-dependent DNA helicase pcrA [Brucella sp. 83/13]
 gi|265984450|ref|ZP_06097185.1| UvrD/REP helicase [Brucella sp. 83/13]
 gi|306839222|ref|ZP_07472039.1| DNA helicase II [Brucella sp. NF 2653]
 gi|264663042|gb|EEZ33303.1| UvrD/REP helicase [Brucella sp. 83/13]
 gi|306405769|gb|EFM62031.1| DNA helicase II [Brucella sp. NF 2653]
          Length = 858

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 196/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                       +   L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPRGAGERSELGVSENKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAKTILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|325143147|gb|EGC65493.1| DNA helicase II [Neisseria meningitidis 961-5945]
 gi|325197521|gb|ADY92977.1| DNA helicase II [Neisseria meningitidis G2136]
          Length = 735

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T   E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASQEQGVSLWQAACNAGAKAAKVAAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 467 QVGQMPLPEIIAGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEESRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|292487197|ref|YP_003530069.1| DNA helicase [Erwinia amylovora CFBP1430]
 gi|292900427|ref|YP_003539796.1| exodeoxyribonuclease V subunit beta [Erwinia amylovora ATCC 49946]
 gi|291200275|emb|CBJ47403.1| exodeoxyribonuclease V beta chain [Erwinia amylovora ATCC 49946]
 gi|291552616|emb|CBA19661.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Erwinia amylovora CFBP1430]
          Length = 1178

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 139/968 (14%), Positives = 303/968 (31%), Gaps = 143/968 (14%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +     K  W         I+          +  +    + +   +Q +  +        
Sbjct: 228  ARISTLKQAWLAAGDLQQVIDASGVDRRSYNSKHLPNWLEKISLWAQAETQDYEVPKDLE 287

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             F  +    +    T++       L +++     E + +RD      + +     +    
Sbjct: 288  RFGQRLLLEK----TKKGEPPRHPLFDRIDAFLAEPLSLRDLVIARALQQ-----VRFVT 338

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                  ++ K+ +  L F+DL+   +  L++      +   I Q     LIDE QDT   
Sbjct: 339  ------QQQKRLHAQLGFDDLLGRFDAALQQPG-GEALASAIRQRYPVALIDEFQDTDPQ 391

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+ + R+L                L  +GD KQ+IY+F GA+    ++ +       T  
Sbjct: 392  QYRIFRTLYR--------RQPDSALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYT-- 441

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                    L  ++RS+  ++  V+++FS  +N    SE     +   +   G   +VQ  
Sbjct: 442  --------LETNWRSSPAMVNAVNQLFSGQQNPFLFSEIPFINVNPAAPNHGLNFSVQ-- 491

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-----NG 366
                     +  P  + W    D +        +AR+ A  I   +            +G
Sbjct: 492  --------GKVQPALQFWLQPGDGVGVSDYQQFMARQCAAEICRWLSAGQKGEALMGKSG 543

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            ++R +QA DI VLVR R +  +I      L      SV  ++R  +      ++++ L +
Sbjct: 544  QQRAVQASDITVLVRSRSEAAVIREALNAL---AIPSVYLSNRDSVFTTPEAREMLWLLQ 600

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +L+ E +      L + LF      +  +       + + +    +    +   + V+ 
Sbjct: 601  AVLAPEQERILRSALATSLFGTDALALDALSQDERAWDALVDEFVDYRQRWLQ--RGVLP 658

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNS 543
             + EL+              +L +  G ++            L E L      L +E   
Sbjct: 659  MLRELMMKR------QIAENLLASGNGERRLTDLL------HLGELLQEASATLDSEHAL 706

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               L + I + +    + +    ++ + V+I+T+H +KGL+ P+V+L    +        
Sbjct: 707  VRWLAQQIEQPDGQSASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVAN-------- 758

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL- 662
                     ++          +        + I+  ++    E  RLLYV +TR+     
Sbjct: 759  -----FREADNGVYHDRQTFTALLDLQQSEESIELAEQERLAEDLRLLYVALTRSIFHCS 813

Query: 663  -----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                 +I            ++     +V      D       L    +    +       
Sbjct: 814  VGIGPLIKGTRKKEGNSDLHRSALGYLVQQGEPADATGLLAALQALNSDATALIIAAEAD 873

Query: 718  HPEN-TPLEREETIKQLMDEQKIPKKLF-----------SPIKNDINEPYILNPSTIDTK 765
             P   T  E    +      + +                  I  +      ++ +   + 
Sbjct: 874  APPWQTQQEEVGILSSRTLPRSLRDNWRVTSYSGLQQHGHSIVMEWLPRLDVDAAGEASI 933

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
             +    +  +  +    G  +H L + +        +         +A+    +    + 
Sbjct: 934  ERVPQLTPHTFPRGAGPGTFLHGLFETLEFSAPLDEEWLAQQL---SAQALGEEWQPVMR 990

Query: 826  LSITRLLENPM------MTTAMSCDSYSE----VSVSGKINCPKKDIIIS---------- 865
              I R+L+ P+      +    +    +E    + +S  +     D ++           
Sbjct: 991  NWIERILQTPLNETGVSLYQLPAPARKAELQFYLPISRLLTSEALDRVVRQDPLSQPCPP 1050

Query: 866  -----------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLS 905
                       G ID +   Q   ++ +YK++        +             +  Q  
Sbjct: 1051 LDFHQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTQEAMAQAMQAHRYDLQYQ 1110

Query: 906  IYEKILKD 913
            +Y   L  
Sbjct: 1111 LYTLALHR 1118


>gi|169628149|ref|YP_001701798.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus
           ATCC 19977]
 gi|169240116|emb|CAM61144.1| Putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus]
          Length = 807

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/622 (16%), Positives = 182/622 (29%), Gaps = 134/622 (21%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +       +   +   Y+   +    LDF+DLI  T  +L++      I     ++  HI
Sbjct: 189 ELRGDLPQIVADVYGEYQRRLRAANALDFDDLIGETVAVLQQFP---QIAQFYRRKFRHI 245

Query: 181 LIDEVQDTSLIQWEVIRSLTED--FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           L+DE QDT+  Q+ ++R L               P  L  VGD  QSIY+F GA  + + 
Sbjct: 246 LVDEYQDTNHAQYVLVRELVGAHVDRTVDPDGPEPAELCVVGDADQSIYAFRGATIRNIE 305

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             +R               I L  ++RST +IL+  + V +   N +             
Sbjct: 306 EFERDYPN--------AKTILLEQNYRSTQNILSAANSVIAKNANRREKR---------- 347

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                      LW             +        +   +       A  IA  I  +  
Sbjct: 348 -----------LW-------TDSGEGELIVGYVADNEHDE-------ASFIAREIDGLFD 382

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                           DI V  R   ++  +  +         I           +   I
Sbjct: 383 RS---------DANYGDIAVFYRTNNNSRSLEEIF----IRTGIPYKVVGGVRFYERKEI 429

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--- 474
           +D++A  R + +  D +S   +L +P     +     +            E +   A   
Sbjct: 430 RDIVAYLRVLTNPGDAVSLRRILNTPRRGIGDRAEACVAVHAETNGIGFGEALADAAAGK 489

Query: 475 -----NCGISKFQHVIKYIHELIHIAQFCSP------HDFFTLILGAKKGRQQFISRFGN 523
                +         +  + ++    +   P       D    +L     R +  +    
Sbjct: 490 VAMLNSRSEKAIAAFMDMLDQIRVTLRTDDPGALPDIGDVVEAVLNHTGYRYELENSSDP 549

Query: 524 E---VIDVLDEFLNFTLRNEQ--------------------NSYSSLQELISELEQYPPT 560
           +    +D L+E ++                               SL+  +  +      
Sbjct: 550 QELARLDNLNELVSVAHEFSADAANAQAAGEDVPGDDEDVGAPPGSLEAFLERVSLVADA 609

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
            +    ++   V +MT+HTAKGLE PVVF+      +F H       +            
Sbjct: 610 DEL-PESSAGVVTMMTLHTAKGLEFPVVFVTGWEDGMFPHMRALGDPV------------ 656

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                    E  RL YVG+TRA  +L + +    S+  +     
Sbjct: 657 ----------------------ELAEERRLAYVGITRARQRLYLSRAKVRSSWGQPMMNP 694

Query: 681 WYDMVYDSFHNDERVKKIKLTN 702
               + +        ++     
Sbjct: 695 ESRFLQEIPQELIDWRRTDPLP 716


>gi|303229716|ref|ZP_07316502.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515613|gb|EFL57569.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 1273

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 119/714 (16%), Positives = 217/714 (30%), Gaps = 55/714 (7%)

Query: 1   LKNRF-GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT----LQQ 55
           L++   G ++ +  +     +          +   V              A       Q 
Sbjct: 216 LRDTLWGRAMWDDQQAEIDRIADRIEQMEPLLESPVGPKKWDKVYQEQLAALAQLKGAQT 275

Query: 56  ASQTQCIEERFSLLSSFFLTQKFT-PQKNIITQEINKKSPDLKEKLKKSQ-------DEF 107
            S    +       +    T      +K  +   +  +   L  + K S           
Sbjct: 276 WSDMVDVCRNLDTFTKASFTSLGKALEKGEVDGALADEFKSLGSQNKDSLKGMKNGLFHI 335

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KK 162
            +   +      +      + L    +  Y+EAKK+  ++DF DL      LL     + 
Sbjct: 336 DESVLQQQFKDQYPLIHNLVELTIAFHKAYDEAKKEQGIMDFSDLEHLCLALLVEPGTED 395

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               + +  ++      I++DE QDT+ +Q  +I  +           S     F VGD 
Sbjct: 396 DPQPSEVALELQDTFKEIMVDEYQDTNGVQETIINLI-----------SRVDNRFYVGDV 444

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQ+IYSF  A+                        I+L  +FRS  +ILT  + +F    
Sbjct: 445 KQAIYSFRMADSSL---FMNKYNTYGLMNDAVERRIDLAKNFRSHENILTTTNFIFYQIM 501

Query: 283 NAQGLSEDSTTTIRHRSSR-------IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +    D          R           G V+L     S  +       +S T+  + 
Sbjct: 502 TQEAAELDYGEKESLIPGRIVEEAPSDWVGGAVELHLLDTSDTNRSDETDGDSETAGDEP 561

Query: 336 LPQESSASILARRIAYTISNMIGTDTIF--SNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
              E         I   I  +  +      ++G  R IQ +D  VL R            
Sbjct: 562 ENNERELD----FIIQKIKELHASKKQVQNADGSFRQIQWRDFAVLRRSLAGWGTRAV-- 615

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   I  V N+R    +   I+ L++L + I + E DL    +L S L     +++
Sbjct: 616 -AAMRQAGIPAVVNERDGYFEAQEIQLLLSLLQIIDNPEQDLPMAAVLHSGLVGLDANEL 674

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             +     +                 +    I +I     +++     D    I      
Sbjct: 675 GAL-RLTGDGSLWSVMPLYAERAQDEQLLQFIAHIERWRTLSRRHGVADLLWDIYEILDY 733

Query: 514 RQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSA 567
                    G      +          E + +  L   +  +E          +    + 
Sbjct: 734 VNYVGAMPNGLVRRANVMALYERAKGFESSGFRGLFRFLRFVESLRDSNQDMAVANVVTE 793

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + VR+MT+H +KGLE PVVFL     +  +      + +  +            +   
Sbjct: 794 ADDVVRLMTIHKSKGLEFPVVFLSGVQKKFNTMDFNSPLLVDKNGGIGLKGYYPDIRVSY 853

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
            +            + + E  R+LYV +TRA D+L +  + N   +K+      
Sbjct: 854 PSMPWLYCKSIKSDAMKAEEQRILYVALTRARDKLFLTGYINKEIKKEKGVGAH 907



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 52/159 (32%), Gaps = 13/159 (8%)

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-ITRLLENPM 836
                 G ++H+ +Q +      ++         +    +  +E   L    +     + +
Sbjct: 1108 TGAQWGTLMHEAMQWLPVKKYTQKSMTDMLDSLQAEGKFSDEERSLLSDRSLYGFFNSDL 1167

Query: 837  MTTAMS-CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHH 887
                ++      E+  S   +           + + + G ID + +      + +YKT  
Sbjct: 1168 GQRLIASKRVERELPFSMLFDGNRVYPDVENGERLFLQGIIDTVFVEDDQWVLVDYKTDR 1227

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                +   +   +  Q+ +Y++ L+    N  +    IY
Sbjct: 1228 VKSGD--ELIRRYKIQMDLYKEALERL-TNMPVKASYIY 1263


>gi|239995580|ref|ZP_04716104.1| DNA helicase II [Alteromonas macleodii ATCC 27126]
          Length = 723

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 115/704 (16%), Positives = 216/704 (30%), Gaps = 138/704 (19%)

Query: 1   LKNRF---GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57
           L N     G    ++  L+++  W +    ++  +             +  + ++L   S
Sbjct: 22  LSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILAVTFTNKAAKEMRGRIESLMGRS 81

Query: 58  QTQCIEERFSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR- 113
                   F  L+   L     +    +N    + + +   ++  LK    +      R 
Sbjct: 82  LHNMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLIRRILKAMNLDEKHWAPRQ 141

Query: 114 ------------FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                            +           + + A Y++A  ++ ++DF +L++  ++L  
Sbjct: 142 IQWYINGNKDEGLRPQHIETHGDHIQKTMREVYAAYQDACDRSGLVDFAELLLRAHELWA 201

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           K      +     +    +L+DE QDT+ IQ+  +R L                +  VGD
Sbjct: 202 KNPE---VLVHYQRRFRAVLVDEFQDTNNIQYAWLRMLCS---------GGNNNIMIVGD 249

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GA    +    +           + + I L  ++RST +IL   + V    
Sbjct: 250 DDQSIYGWRGANVDNIQHFLKDF--------NEPTTIRLEQNYRSTGNILKAANTVIDNN 301

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
               G                      +LW             +  S  + F+ L +   
Sbjct: 302 TGRLGK---------------------ELW-------TEDAQGELISVYAGFNELDE--- 330

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR I   I + +                 D  +L R    + ++            
Sbjct: 331 ----ARFIVSKIKDWLNQGNAL----------TDTAILYRNNAQSRVLEEAL----LHEG 372

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          +   IKD +   R +    DD +F  ++ +P     E  + ++  T R
Sbjct: 373 LAYRIYGGLRFFERQEIKDALGYMRMVSHPHDDAAFERVVNTPSRGIGEKTLSQVRDTAR 432

Query: 461 HETETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               ++++  Q   N G  K       Q  +  I EL                +      
Sbjct: 433 MHNCSMWQACQLLINEGGFKGRALNAMQSFVLLITELEQSTLDEPLDQQADKAIRQSGLY 492

Query: 515 QQFISRFGNEVI---DVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSA 567
             + +  G +     + L+E +          E    S L   ++               
Sbjct: 493 AMYQAERGEKAQARLENLEELVTACKTFIVPEEAEEMSPLAAFLAHASLEAGET--QADK 550

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           + + V++MT+HTAKGLE P+VFL      +F  +                          
Sbjct: 551 DQDAVQMMTIHTAKGLEFPLVFLAGVEEGMFPSQMTNDEPG------------------- 591

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                            EE  RL YVGMTRA  +L I    +  
Sbjct: 592 ---------------RMEEERRLCYVGMTRAMQKLYITYAESRR 620


>gi|254702135|ref|ZP_05163963.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 5 str. 513]
 gi|261752704|ref|ZP_05996413.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513]
 gi|261742457|gb|EEY30383.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513]
          Length = 858

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTEDFFVGK-----------------------------NTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERGELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|30249444|ref|NP_841514.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
 gi|30138807|emb|CAD85384.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718]
          Length = 744

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/583 (15%), Positives = 179/583 (30%), Gaps = 115/583 (19%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           ++ Q      ++                        YE    +   +DF +L++   +LL
Sbjct: 138 RQLQWFINNAKEEGLRASQVDVHGGFNQTLAECYQAYEIVSMREGTVDFAELLLRCYELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            + ++   +R        HIL+DE QDT+ +Q++ I+ L                +FAVG
Sbjct: 198 SRNEI---LRDHYRSRFEHILVDEFQDTNRLQYKWIKLLAG------PGSQQHAAIFAVG 248

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   ++              II L  ++RS  +IL   + +   
Sbjct: 249 DDDQSIYAFRGAHVGNMRDLEKDF--------SVPKIIRLEQNYRSHGNILDAANALIEH 300

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                     LW        +        + +  D      
Sbjct: 301 NKGRLGKN---------------------LW------TAAGKGEPVRVYHAATDMDETS- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                   I   I  +              +   DI +L R    + ++         + 
Sbjct: 333 -------FIIDEIKALHADG----------LALSDIALLYRSNAQSRVLEHGL----FNA 371

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            +S          D   +K  +A  R I   +DD + + ++  P        + ++    
Sbjct: 372 SVSYRVYGGMRFFDRQEVKHALAYLRLIALPDDDNALLRIINFPPRGIGARTLEQLQDQA 431

Query: 460 RHETETVYEYIQK----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                ++++   K            +         +  +  +    +     +    ++ 
Sbjct: 432 AMLGTSLWQAAFKVYEGGKAVATRNSQPGRGIAGFVSLVLSMQQDGEGLPLPEIIRRVID 491

Query: 510 AKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSA 567
                  + + R G E ++ L E +N       ++   SL   ++               
Sbjct: 492 QSGLAAHYQAEREGGERLENLKELINAATSFVHESEDDSLTAFLAHASLEGGE--HQAEG 549

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + V++MTVH AKGLE   VF+      +F H++ +                       
Sbjct: 550 YQDAVQLMTVHAAKGLEFHSVFISGLEEGLFPHENSRNEPDG------------------ 591

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                            EE  RL+YV MTRA  +L +    + 
Sbjct: 592 ----------------LEEERRLMYVAMTRARQRLYLSYAESR 618


>gi|119773559|ref|YP_926299.1| DNA-dependent helicase II [Shewanella amazonensis SB2B]
 gi|119766059|gb|ABL98629.1| ATP-dependent DNA helicase UvrD [Shewanella amazonensis SB2B]
          Length = 721

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 115/721 (15%), Positives = 232/721 (32%), Gaps = 132/721 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  W L     S  +             + ++ + +   +  +     
Sbjct: 30  GAGSGKTRVLTHRIAWLLQVENQSPYSILAVTFTNKAAAEMRERVEKIVGHNTGRMWIGT 89

Query: 66  FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L+   L    Q     ++    + + +   LK  LK    +  +   R     +   
Sbjct: 90  FHGLAHRLLRTHWQDAGLPQSFQIMDSDDQQRLLKRILKSMNLDEKQYPPRLVAGYINGK 149

Query: 123 TLASLTLAK-------------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
               L  A               L   Y+++  +  ++DF ++++  ++L   +     +
Sbjct: 150 KDQGLRPAHIDAGPFPMEQKLLELYRIYQDSCDRAGLVDFAEILLRAHELWLNKPH---L 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    HIL+DE QDT+ IQ+  IR L  +             +  VGD+ QSIY +
Sbjct: 207 LAHYQDRFRHILVDEFQDTNAIQYAWIRVLAGN----------TANVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R  +               I L  ++RST +IL   +++ +   +  G   
Sbjct: 257 RGAQIENLHRFLQDFP--------GAKTIRLEQNYRSTGNILKASNELIANNPDRMGK-- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW           + +  S    F+ + +       AR I
Sbjct: 307 -------------------ELW-------TEDKDGEPISLYCAFNEMDE-------ARFI 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              IS+      +            +  +L R    + ++            +       
Sbjct: 334 VGRISDWQDKGGML----------GECAILYRSNAQSRVLEEAL----LHKGMPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IKD M   R I +++DD +F  ++ +P     E  +  +  T R E  T+++
Sbjct: 380 LRFFERQEIKDAMGYLRLISNRDDDAAFERVVNTPARGIGERTLDILRSTARKEQLTLWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              +            +  +  +  I +L         +     ++     +  + +  G
Sbjct: 440 TSLRLLEEKVLSGRAANAVKGFLDLIVQLRSDTDELPLYRVADHVIQHSGLKAMYEAEKG 499

Query: 523 NEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
                  + L+E +      E       + EL + L        +    A+ + V++MT+
Sbjct: 500 ENAQARVENLEELVTAARSFEMPEELEDMGELNAFLSHAALEAGEGQADAHTDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+VF+      +F  K                                  + 
Sbjct: 560 HSAKGLEFPMVFMAGVEEGIFPSK----------------------------------LA 585

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             +    EE  RL YVGMTRA  +L I    +     + +       + +         +
Sbjct: 586 LEEGDRLEEERRLCYVGMTRAMQKLYITYAESRRIYGREDYARPSRFIREIPPEYVEEIR 645

Query: 698 I 698
           +
Sbjct: 646 L 646


>gi|189183408|ref|YP_001937193.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda]
 gi|189180179|dbj|BAG39959.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda]
          Length = 716

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/552 (19%), Positives = 193/552 (34%), Gaps = 119/552 (21%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
               +A+ +  HY+   +++ V+DF DL++    +  +      +      +  ++ IDE
Sbjct: 160 PIYQVAQKIYQHYQTELQQSNVVDFGDLLLYNMKIFSEYPD---VLNFYQTKFKYVFIDE 216

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+ +Q+   ++L           +    L  VGD+ QSIYS+ GA  + +L+ K   
Sbjct: 217 YQDTNNVQYFWAKALV----------NLHENLCCVGDDDQSIYSWRGANIENILKFKDDF 266

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
           +           +I+L  ++RST  ILT    +    +                      
Sbjct: 267 KN--------AKLIKLEQNYRSTNSILTAASSIICNNKYRHDKK---------------- 302

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW       + Q +        Y D           AR I+  I  +I      S
Sbjct: 303 -----LW------TNKQSDQPIRIVYCYNDREE--------ARFISSEIKKLITKSPNLS 343

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      I VLVR      ++            I       F   D + I D++A 
Sbjct: 344 -----------IAVLVRSSSQAHVLEESF----FSNNIKYQVIGGFRFFDRMEIADMIAY 388

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFANCGISK--- 480
            R +++  D+L+   ++  P  +     +  I     + E +++  I++  +  + K   
Sbjct: 389 LRVLVNHNDNLALTRIINVPKRSIGPATLHTIKEYAQQHESSMFTAIEQILSKKLLKPQL 448

Query: 481 ---FQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
               Q++I    E   + +   +P     +I       Q       ++    I+ + E +
Sbjct: 449 ELTLQNLINKFKEWRSLYKAGYTPAKVTEIICDDSNYLQMLKDDKSSQSDRRIENIQEMI 508

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              L       SS++E +     +       ++ +++ V +MT+H +KGLE  VVFL   
Sbjct: 509 RAMLDY-----SSIEEFLEHASLFLERDNGINAKDNSVVSLMTLHASKGLEFDVVFLPGW 563

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF H+    +                                  +   EE  R+ YV
Sbjct: 564 EEGVFPHQKSLIV--------------------------------EDQRALEEERRIAYV 591

Query: 654 GMTRASDQLIIC 665
           G+TRA   L I 
Sbjct: 592 GITRAKQSLYIS 603


>gi|325107376|ref|YP_004268444.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis
           DSM 5305]
 gi|324967644|gb|ADY58422.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis
           DSM 5305]
          Length = 770

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/651 (15%), Positives = 222/651 (34%), Gaps = 117/651 (17%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+Q +    +++ F++L S    Q    ++ +   + +       + L    +    
Sbjct: 99  ANVLRQRANVVGLQQNFTILDSADQKQA--IKQVLSELDFDAAHYPPGKILATISNAKND 156

Query: 110 IRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           +       + F+ ++A     +   +   Y++   ++  +DF+DL+++   L ++ +   
Sbjct: 157 LVSADAFNQQFEESVADHFTAVVARVYPAYQKFLMESNAVDFDDLLLHVVRLFEENEE-- 214

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +R + D+   +IL+DE QDT+  Q+ ++R+L+++           R L   GD  QSIY
Sbjct: 215 -LRARYDERYQYILVDEYQDTNEAQYRIVRALSQN----------ARNLSVTGDPDQSIY 263

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+   +LR ++  +           +I+L  +FRST  IL   D + +     +  
Sbjct: 264 GWRGAKIDNILRFEKDFE--------DAKVIKLEQNFRSTKLILAAADSLITHNRLRKAK 315

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              +            +   V+L     S  +                          A 
Sbjct: 316 ELTTDN---------DEGEPVELLHFPDSGTE--------------------------AD 340

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            IA  I +++  +              D  +  R    +  +          + +     
Sbjct: 341 SIARHIRHLVEEEGR---------DWSDFAIFYRVNSLSRQLELAL----GRHHVPYQVA 387

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                     ++D++     I +  +  +F+ ++ +PL    +    ++ +   +    Y
Sbjct: 388 AGVAFYQRAEVRDVLQYLELINNPRNRPAFMRVVNTPLRGIGKTSQNRLMSYAEQHNMSY 447

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHI------AQFCSPHDFFTLILGAKKGRQQFIS-- 519
                 A+      +     +     +      A   S  +    ++      +Q++S  
Sbjct: 448 LEAAAEADKVPKMSKRAAASLKAFSRMMSGFSLANSGSVANLIEDVVTQTDYCKQWLSNP 507

Query: 520 -RFGNEVIDVLDEFLNFTLRNEQNSYS--SLQELISELEQ-YPPTIKRAHSANHNEVRIM 575
                +    +DE ++    ++    +  SL+  +               + N  +V +M
Sbjct: 508 SEQDLQRQANVDELISAARNHDTIYDADTSLEGFLETTSLVSDLDALEQQNNNSGKVTLM 567

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE PVV++V     +  H+                                  
Sbjct: 568 TLHAAKGLEFPVVYIVGVEQNLLPHERS-------------------------------- 595

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           ++       EE  RL +VG+TRA  QL +          +S      D + 
Sbjct: 596 LREGNPREYEEERRLFFVGITRAMQQLYVTSSRYRDLHGRSMPTIPSDFLS 646


>gi|298372853|ref|ZP_06982843.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275757|gb|EFI17308.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 776

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/635 (16%), Positives = 188/635 (29%), Gaps = 123/635 (19%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-SLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
            +  ++   ++  I   D      M +            + A Y    ++   +DF+D++
Sbjct: 146 AVFNRISAMKNRLIASDDYRADSDMNRDDYHRGWQYFSEIFAAYCTRCRQANAMDFDDIL 205

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           ++T  LLK       I  K       IL+DE QDT++ Q  +I  L ++           
Sbjct: 206 LHTYLLLKNNPD---ILAKYRNRFAFILVDEYQDTNIAQHRIINLLAKE----------H 252

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           R +  VGD+ QSIYSF GA    +L  ++  +           I +L  ++RST +I+  
Sbjct: 253 RRISVVGDDAQSIYSFRGANIDNILSFQKNFE--------GCRIFKLEENYRSTQNIVDA 304

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + + +           S                                 + +  + + 
Sbjct: 305 ANSLIAKNRFQIPKRVYSNLP---------------------------KGDKIKVLSCFT 337

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           D           A  IA  I          S    R     DI VL R    +  +    
Sbjct: 338 DR--------NEAEVIADEIK---------SAAADRDAHYSDIAVLYRTNAQSRALEDAL 380

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
           R    +  I               IKD++A  R +++  D  S   ++  P     +  +
Sbjct: 381 R----NDNIPYRIYGGLSFYSRKEIKDVLAYMRLVINHLDAESLRRIINYPARTIGDKTV 436

Query: 454 FKICT-QRHETETVYEYIQKFANCGIS-------KFQHVIKYIHELIHIAQFCSPHDFFT 505
            K+         +  + I    N           K +   + I  L  + +    +    
Sbjct: 437 AKLIDLSSKHRISPLDCIFDIDNIPNDFNAGTRTKLKKFGELISNLTEVYRSSDAYSTAN 496

Query: 506 LILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ------NSYSSLQELISELEQ 556
            I+ A    ++  S    E     + + E LN      +          SL E +SE+  
Sbjct: 497 AIITASGIMEELSSNDDIENVSRRENIHELLNAIHEYCEQKKSLGEDNPSLSEFLSEVSL 556

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +MT+H+AKGLE   VF+      +                   
Sbjct: 557 LTDQD-TDRDGQRDCVTLMTIHSAKGLEFAYVFVAGIEEDLLPSSM-------------- 601

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   +   EE  RLLYV +TRA  +  +            
Sbjct: 602 ---------------------CQTEYEIEEERRLLYVAITRAKRRCFLSYSKTRFRWGNV 640

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
              +    + D       + +           +  
Sbjct: 641 CYCSPSRFLSDIDEQYLDMPQAFAQYPDEAPSFER 675


>gi|157803783|ref|YP_001492332.1| DNA helicase II [Rickettsia canadensis str. McKiel]
 gi|157785046|gb|ABV73547.1| DNA helicase II [Rickettsia canadensis str. McKiel]
          Length = 661

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/554 (20%), Positives = 187/554 (33%), Gaps = 119/554 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +AK +   Y++    +  LDF D ++  N+L  K      I      +  +ILIDE QD
Sbjct: 180 RVAKLVYQEYQQNLLISNALDFGDFLLYNNELFIKNPD---ILKYYQDKYRYILIDEYQD 236

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+++Q+   R L   +          + +  VGD+ QSIY + GAE   +LR ++     
Sbjct: 237 TNIVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGNILRFEKDF--- 283

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   +II+L  ++RST  IL     V +  +N  G +                   
Sbjct: 284 -----SGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT------------------- 319

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW       D +   + +  + + D           AR IA  I  ++  D       
Sbjct: 320 --LW------TDRENGEKIKIVSCWSDKEE--------ARYIAGEIERLVREDR------ 357

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                A +I +LVR    T            +  +           + + I+D++A  R 
Sbjct: 358 ---YNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERMEIRDVIAYIRI 410

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK----FQ 482
            L+Q D+ +   ++  P        + KI      +  + +  I+K    G +K     +
Sbjct: 411 SLNQNDNFALERIVNVPKRAIGAATLSKIKAYAIEQNISHFAAIKKMLEKGKAKSYETLK 470

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
             +  I          +P +    IL      +        E    I+ ++E L      
Sbjct: 471 DFVTKIDNWHERFNTDAPINVVKAILHDSGYLEMLKEEQTEEAFGRIENINEMLRAIAEF 530

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                    ++   +E     ++      H    V IMT+H AKGLE  VVFL      V
Sbjct: 531 --------NDIHDFIEHSSLVMENESLETHYGGSVTIMTLHAAKGLEFDVVFLPGWEEGV 582

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F  +                                       +   EE  R+ YVG+TR
Sbjct: 583 FPSQKSLD--------------------------------EDGEKGLEEERRIAYVGITR 610

Query: 658 ASDQLIICKHSNTS 671
           A   L I    +  
Sbjct: 611 AKKDLYITYAESRK 624


>gi|258510954|ref|YP_003184388.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477680|gb|ACV57999.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 705

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/643 (18%), Positives = 225/643 (34%), Gaps = 115/643 (17%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  +    + ++   T  + +S  + L +A  +   Y +       +DF+DLI +T  LL
Sbjct: 141 RSIKHRISQWKNEGATRVVNESNPSDL-IADRVMELYNKRLFAANAMDFDDLIGHTVRLL 199

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           ++ D    +R K  ++  H+L+DE QDT+ IQ+ ++R L              R L AVG
Sbjct: 200 EQNDD---LRDKYQEKFRHVLVDEYQDTNGIQFRLLRLLCA----------KHRNLCAVG 246

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  Q+IY++ GA+ + +LR +R              I+ L  ++RST +IL   + V + 
Sbjct: 247 DADQAIYAWRGADSEHMLRFERDFP--------DAKIVVLTRNYRSTQEILDAANSVIAH 298

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
               +     ST     +   +                                      
Sbjct: 299 NPRRRPKELRSTRGHGDKPLVVRLPDG--------------------------------- 325

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
             +  A  +A  I   +              + +D  VL R    +  I         + 
Sbjct: 326 --AAEAHYVAEAIEEHVRNGG----------RYEDCAVLYRANAQSRAIEEKL----LER 369

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQ 459
            I           D   +KD++A  R +++ +D++S + ++  P     +  + + +   
Sbjct: 370 AIPYTVVGGMTFYDRREVKDVLAYLRVLVNPQDEISLLRIINRPKRGLGDTAVDRLLEFA 429

Query: 460 RHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
             E  ++YE +        +       +     + EL    +  +  +F   +L A + R
Sbjct: 430 HAEGMSLYEALAHGEEAGLSERTAEAARQFHASLQELALWMEGMAVSEFLAEVLHATRYR 489

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
           + ++     E    ++ +DE  + T   ++    ++ E ++E+      I +        
Sbjct: 490 EMYLESGKKEDLARVENIDELFSVTRSFDERRGGTVAEFLAEVSLLS-DIDKERDRGKGS 548

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           VR+MT+H +KGLE PVVFLV     +F H       +                       
Sbjct: 549 VRLMTLHASKGLEFPVVFLVGMEEGLFPHARSMDDPL----------------------- 585

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE   L YVG+TRA D+L++   +  +   ++  R     + +   +
Sbjct: 586 -----------RIEEERNLCYVGLTRAMDRLVLTHAAWRTLYGQTVAREPSRFLAEIRED 634

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                 +                   H +   L  E    +  
Sbjct: 635 LVVRVDLAEALEPEVLRPGDRVVHPQHGQGIVLSVESHAGEER 677


>gi|258647140|ref|ZP_05734609.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259]
 gi|260853104|gb|EEX72973.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259]
          Length = 794

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 115/800 (14%), Positives = 226/800 (28%), Gaps = 127/800 (15%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
                         +++ + +  +++M          A+ L+       +   FS+  + 
Sbjct: 54  ALTFTNKAAREMRERIAQLVEPAAVAMLWAGTFHSIFARILRIEHAALGLPSTFSIYDAA 113

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY--KMFKSTLASLTLA 130
                       +  +     P             + + D +     +M +     LT  
Sbjct: 114 DAKSLVKSIIRELKLDDKIYRPGTVAARISDAKNHLMLPDEYAADVDRMNRDKRDGLTEL 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y E  ++   LDF+DL++ T  L         I  K  ++  ++L+DE QDT+ 
Sbjct: 174 VRIYNIYIERCRQANALDFDDLLLRTYLLFHD---RPDICEKYVRKFRYVLVDEYQDTNA 230

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+ +IR L                L  VGD+ QSIY+F GA+   +L  +         
Sbjct: 231 VQYRIIRYLC----------PGEARLCVVGDDAQSIYAFRGADIGNILNFQTHYP----- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST +I+   + + S  +N    +  S           G    V +
Sbjct: 276 ---SAKLIKLERNYRSTENIVQAANSIISRNKNRIPKTIYSEN---------GAGDKVCI 323

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 + +S                           ++   I  +              
Sbjct: 324 ISAYTDKDES--------------------------AKVVKEIFKLRRQHH--------- 348

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I    + +L R    +       R    +  +               IKD++A  R + +
Sbjct: 349 ISLDQVAILYRTNAQSRAFEDALR----NAALPYRVYGGLSFYQRKEIKDIIAYCRVVCN 404

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE-------YIQKFANCGISKFQ 482
            +D+ + + ++  P     +  + K+    R   E ++        +        + K  
Sbjct: 405 PQDEEALLRIVNYPTRGIGQTTMSKLIAAARGNGEPLWSVLLAPDKFGVALNRRTLEKLY 464

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN 539
              + I      A     +D  + +L A    Q+       E     + + E LN     
Sbjct: 465 AFAELIRSFQARADVMGVYDLVSELLEASGITQELQGDRTPEGLSKWENIQELLNSIKGF 524

Query: 540 EQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E    + +  L   L +    T +     +  +V +MTVH AKGLE   VF+      +F
Sbjct: 525 ESEQETGVVLLADYLPQVVLLTDQDQQDDDEPKVTLMTVHAAKGLEFEAVFVTGLEDGLF 584

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                         EE  RL YV +TRA
Sbjct: 585 PGT----------------------------------AAKYSARELEEERRLFYVAVTRA 610

Query: 659 SDQLIICKHSNTSNEKK----SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                I          +           ++       D    +   +     +  +A  +
Sbjct: 611 KAHCFITYAKTRYIYGRLEFCEPSLFLQEIDPQYVETDSSSARDFSSFGHLNNGRMAGLF 670

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI-----DTKGKTN 769
                +  P   +                      + +                      
Sbjct: 671 DAAKVDRKPAPSDFHSPTSSSFVADKAFSHRSSAFEADSSRTTVQQGRLRRLSQAATTVK 730

Query: 770 LESLLSDNQTFNRG-LIIHK 788
                S++     G  I+H+
Sbjct: 731 NTDAESESSGLQVGATILHE 750


>gi|254796825|ref|YP_003081662.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii
           str. Illinois]
 gi|254590070|gb|ACT69432.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii
           str. Illinois]
          Length = 905

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 179/850 (21%), Positives = 334/850 (39%), Gaps = 98/850 (11%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE-E 139
           +K        K    L   L     ++ KI ++     + +    S+ +        E  
Sbjct: 151 KKTAENTTERKLHEMLASLLSNFHLDYRKIIEKLKNDPLEQLATESIDILSAFAEFLEIN 210

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
                  +    +I    ++        W  Y+I  +INHIL+DE QD +L QW +I +L
Sbjct: 211 QNISKHYISHNGIIETAINM------EIWNAYEIVAKINHILLDEAQDNNLKQWYIISNL 264

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             DF + +   ++ +++F VGD KQSIY F GA P   L    I ++R  +   K   + 
Sbjct: 265 CRDFLIDE---TNNKSIFVVGDYKQSIYGFQGASPDIYLAFYDILKQR--DPQNKLVQVT 319

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
              S+RS+A IL  VD VF   +    L   S+  I H ++R    G ++L   +     
Sbjct: 320 TAKSYRSSAAILRFVDSVFENVQ----LCTTSSEKICHNTNRAEAPGYIELIPLL----- 370

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                             +  +   LA  I  TI N +    +    K R ++  DIL+L
Sbjct: 371 ---------------QDREVDAELQLAISIRETIENWLKRSRML-KAKNRPVKGSDILIL 414

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           V  R +   +        +   I V    +F + ++   + L+ LG+F++ + DD + + 
Sbjct: 415 VAHRTN---LVDHIYTQLSAVNIPVNFTGKFTVKNNPLFELLINLGKFLIYKHDDEALIT 471

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +LKSP+F +S + + K+  ++ +     +    +A   + K+  +            + +
Sbjct: 472 LLKSPIFAWSHNALLKLKAEKRKERLFEQICGTYAGKVLKKWLEL------------YGT 519

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             D ++ +L A+         +G+E    +D FL+ TL  E             +     
Sbjct: 520 TFDIYSRVLDARTVNT-LAKHYGSETPYYIDIFLDNTLEQECIHD------FVYIFSGED 572

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              +  S N N V I TVH +KG +SP+VF+VD+     +               + G P
Sbjct: 573 ASLKIKSNNENGVTISTVHGSKGTQSPIVFIVDSNYVPQNRDIF--------FFTEDGTP 624

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
           +   ++  R  +V ++    K+S + E+ RLLYV +TRA D+L I        +K S   
Sbjct: 625 LLSSENHIR--VVQEIRNIKKESLRYEHLRLLYVALTRAEDELYIMGTGKQV-KKNSWYE 681

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET--IKQLMDEQ 737
              + +      D+        + +   E       +H   +   ER+     K   + Q
Sbjct: 682 ACSNGIVKIGSQDQDGAYYHTNDLLYPVEIKKKVDRSHENRSLLRERDSDCCKKNTQELQ 741

Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                L +  K    E      S       T +           RG +IHK+L+ I  + 
Sbjct: 742 NKESDLANSYKFPCKEDET---SENGIDDVTKVSEKTFQ---IVRGELIHKILEYISKVE 795

Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
           +   + +   +  + +    +++   +  ++   LE             +E+ V     C
Sbjct: 796 KA--EEWTDLFLEEYSPELSSEQKNEIKKTVLLFLEKNR-----KAGGKNELEV-----C 843

Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              +++   R+D +   +  I I +YKT     + I+        Q+  Y++ ++  YP 
Sbjct: 844 FDGELL---RMDNVKFEKDTITIRDYKTGK--DKNIDLAIEK---QMHRYKEAMQAIYPE 895

Query: 918 KSLVCLLIYV 927
           K+++  +I++
Sbjct: 896 KNIITEIIWL 905


>gi|229822911|ref|ZP_04448981.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271]
 gi|229787724|gb|EEP23838.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271]
          Length = 1311

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 120/698 (17%), Positives = 238/698 (34%), Gaps = 51/698 (7%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +     + + +         +  +   +   ++        + Q LQ     Q + + F+
Sbjct: 235 ASLSHAQHLLEQALAG----LESLTDAMISKLQPLLEAERSQVQALQTVLTNQDLAQVFA 290

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-- 125
                   +  + +K    +E+ ++   L+++ K+  +   ++        ++    A  
Sbjct: 291 HFQKIAFDRWPSGKKAEEDKELLEQVKALRDQAKEQIERVRQLMVLDYDTTVYVEGQAGA 350

Query: 126 ----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV------SAWIRYKIDQ 175
                  L         +AK     +D+ DL   T D+L   D        +        
Sbjct: 351 SIQDLAHLTLEFRQALWQAKVAQNCIDYNDLEHLTLDILAPYDADLGQRQPSEAALYYQD 410

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
               +L+DE QD + IQ  ++  L+ +     +       LF VGD KQSIY F  AEP 
Sbjct: 411 LFREVLVDEYQDINDIQATILSFLSRERRQDLSG-----NLFMVGDVKQSIYGFRMAEPS 465

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
             L + +  Q+     G+   +I L  ++RS  +IL   + VF    +            
Sbjct: 466 LFLAKYQAYQE-----GKGGHLIVLDANYRSRDEILQFTNFVFQRLMDPGFGEMQYGAME 520

Query: 296 RHR----SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +    S            E ++ +  +    + E      +   + S  +  A  I  
Sbjct: 521 SLKTGNHSFLPAPPDPKFDIEFLLYESSAADEGEPEDQELDLEQGVETSLEA-EAWLIGR 579

Query: 352 TISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            I   +       +   G++R +  +D ++L   R     +  +   L     I ++  +
Sbjct: 580 DIQARVQAGWQIYDKELGQQRPVTYQDFVILSSTRHPFQPVKQVFEQL----GIPLLSQN 635

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                    I+ ++AL + I +   D+  V +L+S     S++ + +I  +   + + YE
Sbjct: 636 VENYFQRQEIRLMLALLKLIDNPHQDIPLVAILRSHFVGLSDEQLSQIRIRVPSSGSFYE 695

Query: 469 YIQKFA-------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-R 520
             Q+                 + +  + E   +AQ          +              
Sbjct: 696 ACQQVLLIEEASLVALQETLGNFMGKLKEWRQLAQRVDLVTLIWTLYQETYFLDYVAGLD 755

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIM 575
            G++    L  F    +  E  +Y  L   +  +EQ              S + N VR+M
Sbjct: 756 QGDQRQANLHAFYERVVEFEAGNYKGLTAFVGFIEQIMAHDQDLAEPLLLSEDQNFVRVM 815

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH +KGLE P V+L+ TG +       K                   Q +  + I   +
Sbjct: 816 TVHASKGLEFPFVYLMQTGKRFNIQDTQKVYVPSKRYGLGLDYLDIKHQLQYPSFIKEAI 875

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
               +   + E  R LYV +TR   +L+I     + ++
Sbjct: 876 KLERRGQLKSEEMRKLYVALTRCEQKLVIVGSVKSQDQ 913



 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 92/343 (26%), Gaps = 53/343 (15%)

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E  RL YV        L          + ++        V       E    I+      
Sbjct: 966  EQVRLTYVAEAELLPLLKASTSRPWLQDDQNWLADLKLTVDQHEVTSEVGAFIQSLLESQ 1025

Query: 706  KDEWIAYEWSTHHP--------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
             D  +A + S++          E    E+          Q     L    +    E    
Sbjct: 1026 YDYGLASKTSSYQSVSELKRLYEEPHNEKLSHFTDRRPGQISWDWLTQEDEERAEESETG 1085

Query: 758  NPSTI-------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP---------EHKR 801
              + I       DT                  G   H ++Q +                 
Sbjct: 1086 QKAGIQSIRFTGDTFQAPRFVRERQAYTAAQIGTFTHYVMQQLDFSALEGLDVSDYPAAI 1145

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSGKINCP- 858
            +    ++           E   L  SI + L + +    +  +   + E + S ++    
Sbjct: 1146 QEQAQAWLAAGFMEASQWEAVKLA-SICQFLASDLGQVLIKQAKSLHCEQAFSYRLPAAK 1204

Query: 859  ---------------KKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVP-------QEIEH 895
                              +++ G +D    +    + + +YKT  + P        +I+ 
Sbjct: 1205 LFARQLGADQLQELADSQLLVHGVVDNYLNLPDGRLILIDYKTDRYRPWANLTKSAQIDQ 1264

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIPQ 937
            I   +  Q+S+Y + L      K++    L+ +   +V  +  
Sbjct: 1265 IVDKYRFQMSLYARALS-LAKGKAVTDVYLVLLDFDQVVPVTD 1306


>gi|225627865|ref|ZP_03785902.1| DNA helicase II [Brucella ceti str. Cudo]
 gi|254710455|ref|ZP_05172266.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis B2/94]
 gi|254714448|ref|ZP_05176259.1| ATP-dependent DNA helicase pcrA [Brucella ceti M644/93/1]
 gi|254717346|ref|ZP_05179157.1| ATP-dependent DNA helicase pcrA [Brucella ceti M13/05/1]
 gi|256031949|ref|ZP_05445563.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis M292/94/1]
 gi|256061471|ref|ZP_05451615.1| ATP-dependent DNA helicase pcrA [Brucella neotomae 5K33]
 gi|256160148|ref|ZP_05457842.1| ATP-dependent DNA helicase pcrA [Brucella ceti M490/95/1]
 gi|256255354|ref|ZP_05460890.1| ATP-dependent DNA helicase pcrA [Brucella ceti B1/94]
 gi|260169086|ref|ZP_05755897.1| ATP-dependent DNA helicase pcrA [Brucella sp. F5/99]
 gi|261219176|ref|ZP_05933457.1| UvrD/REP helicase [Brucella ceti M13/05/1]
 gi|261222555|ref|ZP_05936836.1| UvrD/REP helicase [Brucella ceti B1/94]
 gi|261318026|ref|ZP_05957223.1| UvrD/REP helicase [Brucella pinnipedialis B2/94]
 gi|261322237|ref|ZP_05961434.1| UvrD/REP helicase [Brucella ceti M644/93/1]
 gi|261325477|ref|ZP_05964674.1| UvrD/REP helicase [Brucella neotomae 5K33]
 gi|261758591|ref|ZP_06002300.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|265989057|ref|ZP_06101614.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1]
 gi|265998520|ref|ZP_06111077.1| UvrD/REP helicase [Brucella ceti M490/95/1]
 gi|294852740|ref|ZP_06793413.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL
           07-0026]
 gi|225617870|gb|EEH14915.1| DNA helicase II [Brucella ceti str. Cudo]
 gi|260921139|gb|EEX87792.1| UvrD/REP helicase [Brucella ceti B1/94]
 gi|260924265|gb|EEX90833.1| UvrD/REP helicase [Brucella ceti M13/05/1]
 gi|261294927|gb|EEX98423.1| UvrD/REP helicase [Brucella ceti M644/93/1]
 gi|261297249|gb|EEY00746.1| UvrD/REP helicase [Brucella pinnipedialis B2/94]
 gi|261301457|gb|EEY04954.1| UvrD/REP helicase [Brucella neotomae 5K33]
 gi|261738575|gb|EEY26571.1| UvrD/REP helicase [Brucella sp. F5/99]
 gi|262553144|gb|EEZ08978.1| UvrD/REP helicase [Brucella ceti M490/95/1]
 gi|264661254|gb|EEZ31515.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1]
 gi|294821329|gb|EFG38328.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL
           07-0026]
          Length = 858

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|315077282|gb|EFT49344.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA2]
          Length = 810

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +    LDF+DLI+ T  +L++      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANALDFDDLIMCTVTVLRQFPE---VREQYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKGF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDGLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  + + I +        +    IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDDHIAMVGQGKRADEIANSILKESGYITELENSKDPQDETRLENLVELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +   +  
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|329121403|ref|ZP_08250028.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister
           micraerophilus DSM 19965]
 gi|327469693|gb|EGF15160.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister
           micraerophilus DSM 19965]
          Length = 1285

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 132/674 (19%), Positives = 234/674 (34%), Gaps = 61/674 (9%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL--------TQKFTPQK-NIIT 86
             ++     T+ ++   +      +  +E    ++            TQ   P+   I  
Sbjct: 249 EKALMNYTETLSEELAAISILCNAKTWKEWHETINEITFRSLKPVKKTQAENPEALEIYK 308

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKK 143
             I     ++K+KLK+    +  I +        K   +      +       Y + K+K
Sbjct: 309 TTILSTRKNIKDKLKEIAAMYFAIDETRWIEEMKKTCPTIEILSKITTEFYNEYLKRKQK 368

Query: 144 NCVLDFEDLIINTNDLL---------KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
              ++F D      ++L         K+    +    ++ ++   I+IDE QDT+ IQ  
Sbjct: 369 ESTMEFSDTTHYALNILIKKHKLENGKQEIELSEAAKELQKKYKEIMIDEYQDTNSIQEL 428

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +   +           S+ R LF VGD KQSIY F  A+    L +     K        
Sbjct: 429 ITTLI-----------SNGRNLFMVGDLKQSIYRFRMADHTIFLDKYSTFTKDENAKN-- 475

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV------GTV 308
             +I L  +FRS   +L+ ++ +F    N + L           + R+ +       G  
Sbjct: 476 -RLIVLNKNFRSDHALLSSINYIFRQIMNPEILELSYNDDEALHAGRLQETPPDTYIGNK 534

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--SNG 366
           +     ++  +++   ++ S          E+        IA  I N+I  +      +G
Sbjct: 535 EHGSVSINIINNKELEEKISDQDKSQIENGETEII----YIAEEIKNIINNELTVTNPDG 590

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
             R  + KDI +L R          L   + N+Y I     +     D    K L AL  
Sbjct: 591 TYRKAEYKDIAILARS---LSKKASLFLKIFNEYNIPAATQNDDNFLDATETKILRALLE 647

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISK 480
            I +   DL  V +L+S   N  E +  KI   ++E       ET+    +  +     K
Sbjct: 648 IIDNPYRDLPLVAVLRSYFANMDETEFAKIAIAKNELKTQTWWETLPLTEKYVSEKTFEK 707

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539
            +  I+  +     +   S  +    IL              G      ++ F    L  
Sbjct: 708 IKKFIEKYNNWKDYSLNNSISELLQRILEETGYMTYISGLAEGTFRKSHIENFYKLALDF 767

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           ++   + L   +  LE+     +           N V+IMT+H +KGLE P+VFLV+   
Sbjct: 768 DEKEKNGLYRFLYMLEKLTEEGRTPEGKSIKTETNAVQIMTIHKSKGLEYPIVFLVNCNK 827

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                 +        ++            +           +   +S + E  RLLYV M
Sbjct: 828 TFNETDYKPSYITHKTMGLGLHYYSKEHTAHWPTLYWYATKEDSIRSNKAEEARLLYVAM 887

Query: 656 TRASDQLIICKHSN 669
           TRA D+L I   + 
Sbjct: 888 TRAKDKLYITGTTK 901



 Score =  115 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 22/193 (11%)

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP---EHKRKNFITSY------CTKNA 813
            + + +             + G ++HK ++++       E +    IT          +  
Sbjct: 1094 EFRAEPEFMQENKPITGTSYGTLMHKTMELLPFEKLENETEITTEITKLKNNNSITDEEY 1153

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPK--------KDIII 864
            ++   K   + +  I   +++P+ +   +      E+  S  +            + I +
Sbjct: 1154 EILTQKGKHSPVTKIMTFIKSPLGSELKNASEIKKEMPFSILLPADDFYKNCEKGEKIFM 1213

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
             G ID +  +   I I +YKT     +  E +   +  QL IY          K +  + 
Sbjct: 1214 QGIIDCMFETDGKITIIDYKTDKT--KNEEKLINHYKTQLQIYANAASKIL-KKEIKNIY 1270

Query: 925  IY-VSEPKVFIIP 936
            I+  S  K   +P
Sbjct: 1271 IWSFSMGKAIKVP 1283


>gi|254689608|ref|ZP_05152862.1| DNA helicase II [Brucella abortus bv. 6 str. 870]
 gi|254694098|ref|ZP_05155926.1| DNA helicase II [Brucella abortus bv. 3 str. Tulya]
 gi|256257857|ref|ZP_05463393.1| DNA helicase II [Brucella abortus bv. 9 str. C68]
 gi|260755135|ref|ZP_05867483.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870]
 gi|260884147|ref|ZP_05895761.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68]
 gi|261214396|ref|ZP_05928677.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya]
 gi|297248693|ref|ZP_06932411.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus
           bv. 5 str. B3196]
 gi|260675243|gb|EEX62064.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870]
 gi|260873675|gb|EEX80744.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68]
 gi|260916003|gb|EEX82864.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya]
 gi|297175862|gb|EFH35209.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus
           bv. 5 str. B3196]
          Length = 858

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|319955254|ref|YP_004166521.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237]
 gi|319423914|gb|ADV51023.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237]
          Length = 794

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 127/728 (17%), Positives = 241/728 (33%), Gaps = 134/728 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEA 140
           K +   +   K   ++ ++   ++  I +R  FN  ++ ++   +       +  +Y + 
Sbjct: 144 KEMGLDKDVYKYKQVQNRISSYKNSLITVRAYFNDAELQEADAMAKRPRMGDIYQNYVDR 203

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
             K   +DF+DL++ TN+LL K      +  K      +IL+DE QDT+  Q+ +I++L+
Sbjct: 204 CFKAGAMDFDDLLLRTNELLNKFPE---VLAKYQDRFRYILVDEYQDTNHSQYLIIKALS 260

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           + F          + +  VGD+ QSIYSF GA    +L  ++              +  L
Sbjct: 261 DKF----------QNICVVGDDAQSIYSFRGANISNILNFQKDYDN--------VVMYRL 302

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST +I+   + + +   N                          +W       D+
Sbjct: 303 EQNYRSTRNIVNAANSIIAKNTNQLEKV---------------------VW------TDN 335

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              P  +   S  D+           R +A          +IF N  +  +      VL 
Sbjct: 336 DDGPAIKVHRSTTDAEEG--------RFVA---------GSIFENRMQHQMSNGSFAVLY 378

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +  I    R       I               IKD++   R +++ +D+ +   +
Sbjct: 379 RTNSQSRAIEDALR----KRDIPYRIYGGLSFYQRKEIKDVLYYLRLVINPKDEEALKRV 434

Query: 441 LKSPLFNFSEDDIFKICTQRHET--------ETVYEYIQKFANCGISKFQHVIKYIHELI 492
           +  P        + K+    +          E +     K       K       I    
Sbjct: 435 INFPARGIGMSTLDKLTVAANHYGRSIFEVIENLDRINLKINAGTKRKLVDFTNMIKGFQ 494

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSS 546
            + +  +  +    +        +F      E    +D ++E LN        ++    +
Sbjct: 495 IMNETVNAFEISEHVTKKTGILLEFKKDGTPEGIARMDNIEELLNGIKDFVEGQKEVVDA 554

Query: 547 LQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
              +   LE     T     + + + V +MT+H AKGLE P V++V     +F       
Sbjct: 555 TGNISEFLEDVALATDLDNDTGDDDRVALMTIHLAKGLEFPHVYIVGMEEDLFPSGMS-- 612

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              +S  EE  RL YV +TRA  Q  + 
Sbjct: 613 --------------------------------MSTRSELEEERRLFYVAITRAEKQAYLT 640

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              N           W  ++             K   ++   +   Y + +    +   E
Sbjct: 641 YTQNR--------YRWGKLIDAEPSRFLEEIDEKYIENLTPIDNPGYRYKSMIDTDIFGE 692

Query: 726 REET-IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN------LESLLSDNQ 778
            +++ ++Q+     IP     P +N + +   L P      G TN       E  L ++ 
Sbjct: 693 VDKSRLRQIKPTSGIPPSTAKPNENQLRKLRKLKPELAQPIGNTNTVDPNLAEGSLINHT 752

Query: 779 TFNRGLII 786
            F RG ++
Sbjct: 753 RFGRGTVV 760


>gi|242310501|ref|ZP_04809656.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
 gi|239522899|gb|EEQ62765.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489]
          Length = 702

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/607 (16%), Positives = 198/607 (32%), Gaps = 126/607 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEE 139
            +  T++I K+       L     E  + ++   + +                +  +Y+E
Sbjct: 115 DSDDTKKIIKELNAELAPLPLVVSEISRYKNSQISPQEASKNAHNEIYKHIAKVYENYQE 174

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           +  +N ++DF+DL++    + +       +  +I Q+  +I++DE QDT+ +Q+++++ L
Sbjct: 175 SLLQNNMVDFDDLLLLPIQIFQNH---KEVATEISQKYQYIMVDEYQDTNDLQYQLLKYL 231

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                      ++ + L  VGD+ QSIYS+ GA  + +L   +  Q            I+
Sbjct: 232 C----------TTHQNLCVVGDDDQSIYSWRGANIQNILNFSKHFQN--------AKTIK 273

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS+  IL   + + +  +   G +  ST                           
Sbjct: 274 LEENYRSSKHILRAANNLITNNKERLGKTLKSTL-------------------------- 307

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                +       FD   +        R +   I N++             I  KDI +L
Sbjct: 308 --GEGKPIEILHSFDEQEE-------VRNLCKIIKNLLSNG----------INPKDIAIL 348

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  +        N   I  +        +   IKD+++  R +++  DD S + 
Sbjct: 349 FRLNALSRSLEEGF----NREGIPYILVGAIRFYERSEIKDVISYFRVLINLNDDFSLLR 404

Query: 440 MLKSPLFNFSEDDIFK-----------ICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           +L  P     +  I K           I              ++      +  +   + +
Sbjct: 405 ILNKPKRGIGKTTIEKLKNLTQIHLCSIYELFAHPHLQESLQKEIGKKAHTTIKDFFEIL 464

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSY-SS 546
            +L   +   S   F             F+      + +  ++EF        + +    
Sbjct: 465 KDLQE-SHKQSSLRFLDDFEEKIGLCNAFLQNNDEIDRVSNIEEFYGLYREYIKQNPLME 523

Query: 547 LQELISELEQYPPTIKRAHSANHNEV---RIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           L++ ++EL                 V     M+VH++KGLE   VF++      F     
Sbjct: 524 LEDFLNELALRSDQEDMEMRQEKKGVEGISCMSVHSSKGLEFDYVFIIGLEEGFFPMVR- 582

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                               + S  +E  RL YV  TRA  +L 
Sbjct: 583 ------------------------------------EDSNIQEERRLGYVAFTRAKKELY 606

Query: 664 ICKHSNT 670
           +    + 
Sbjct: 607 LSYVDSR 613


>gi|189499756|ref|YP_001959226.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
 gi|189495197|gb|ACE03745.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
          Length = 735

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/626 (18%), Positives = 205/626 (32%), Gaps = 123/626 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y    ++N  LDF+DL+I   +L +++     +  ++     +I+IDE QDT+
Sbjct: 170 AAGIYEVYARRLRENNALDFDDLLIKPLELFQEQPA---VLEQLQDYFRYIMIDEYQDTN 226

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ V +SL              R +F VGD+ QSIYS+ GA+   +L  +        
Sbjct: 227 RAQYLVAKSLAA----------VHRNIFVVGDDAQSIYSWRGADITNILNFQDDYP---- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 S  +L  ++RST  IL   + +             S                  
Sbjct: 273 ----DVSAFKLVENYRSTQTILQAANGIIKRNSRQIEKELVSH----------------- 311

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                      Q   +  +    F+   +       A ++   I ++            +
Sbjct: 312 -----------QSTGEPLTLLESFNEKRE-------AEKVGENIQSL---------KLVK 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  V  R    + ++  + R      +I               IKD +A  RFI 
Sbjct: 345 GYDYRDFAVFYRTNAQSRVLEDIFR----IQRIPYRIFGSVSFYKRKEIKDAVAYLRFIR 400

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGIS-----KFQH 483
           + +D  S + ++  P     E  I K+      +  +VYE I K    G         Q 
Sbjct: 401 NDQDTESLLRIINFPPRKIGEVSIGKLRDYAASQGISVYEAILKAEEAGFPARLKNALQG 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               I +L HIA   S +D  + +  +             E     + L E L+      
Sbjct: 461 FSVVIEQLKHIAVDGSVYDVLSSLYESTGITSLLKDENTPESMARHENLQELLSMARDFS 520

Query: 541 QNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++    SL E ++ +     T       + N V +MTVH AKGLE PVVF+     ++F
Sbjct: 521 DHNPEANSLDEFLNGISLA--TDYNEVQESDNYVSLMTVHAAKGLEFPVVFITGLEERLF 578

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                + + +    EE  RL YV +TRA
Sbjct: 579 P------------------------------------LNYYETDELEEERRLFYVAVTRA 602

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             ++ +        + + N       +   F ++     +        +           
Sbjct: 603 QQKVFLSWS-----KSRYNYGQPQTCLRSMFIDEIDSSILVTEGGGEHEPGSGRSAGREG 657

Query: 719 PENTPLEREETIKQLMDEQKIPKKLF 744
             N+     + +    + +  PK+  
Sbjct: 658 FSNSRPAVPDFVSGRRERENRPKEAS 683


>gi|257869252|ref|ZP_05648905.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2]
 gi|257803416|gb|EEV32238.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2]
          Length = 750

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/755 (14%), Positives = 236/755 (31%), Gaps = 142/755 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L  +         
Sbjct: 35  GAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVNQLLGSGGEDVWVST 94

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +         
Sbjct: 95  FHSMCVRILRRDVDQIGYSRNFTIIDTSEQNTLMKRVLKELNIDPKKYDPRSILGAISNA 154

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T   +++   SL   +     A Y++  + N  +DF+DLI+NT  L K+ + +  
Sbjct: 155 KNELLTPADYENQQGSLFEQIVGRCYALYQKELRNNQCMDFDDLIMNTIRLFKENEDA-- 212

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 ++ ++I +DE QDT+  Q+ ++  L + F          + L  VGD  QSIY 
Sbjct: 213 -LQFYQRKFHYIHVDEYQDTNHAQYTLVNLLADRF----------KNLCVVGDADQSIYG 261

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++             ++I L  ++RST  IL   ++V     N    +
Sbjct: 262 WRGANMQNILDFEKDYP--------DAAVILLEQNYRSTQTILNAANQVIKNNRNRPDKN 313

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW             ++ ++        +  S    AR 
Sbjct: 314 ---------------------LW-------TENSAGEKITYY-------RGDSERDEARF 338

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   +   I           +  +  D  VL R    + +I  +         +      
Sbjct: 339 IVSEMQKQIAD---------KGRKFGDFAVLYRTNAQSRVIEEML----LKANVPYTMVG 385

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVY 467
                D   I+D++A    I +  D LS   ++  P        + K+         ++ 
Sbjct: 386 GRKFYDRKEIRDILAYLSAIANPSDSLSLERIINVPKRGIGATSVEKLREFASLHEWSLL 445

Query: 468 EYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           E          +     +       + +   +  + S  +    IL     +Q  I++  
Sbjct: 446 EAAMNVDLANISGKAGKELGSFGMMMDQFAQMIPYLSVTELTKEILDKTGYKQDLINQNN 505

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSS-----------LQELISELEQYPPTIKRAHSAN 568
            E    ++ L+EFL  T   ++   +            L   +++L            ++
Sbjct: 506 LESQSRLENLEEFLTVTQEFDKRFEAQNEDDADAPEEKLTVFLNDLALLSDVDSYEEESS 565

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V +MT+H AKGLE PVVFL+     +F                              
Sbjct: 566 Q--VTLMTLHAAKGLEFPVVFLIGLEENIFPLSRALMEESELEEERRL------------ 611

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                                  YVG+TRA ++L +    + +   ++        V + 
Sbjct: 612 ----------------------AYVGITRAEEELFLTNAFSRTLYGRTQYNRPSRFVEEI 649

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
             +  +    +         +    +   + +   
Sbjct: 650 EQDLLQSLGERTQPKGAAASFQPKVFKPTYTQPRQ 684


>gi|289573579|ref|ZP_06453806.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           K85]
 gi|289538010|gb|EFD42588.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           K85]
          Length = 694

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/684 (15%), Positives = 190/684 (27%), Gaps = 136/684 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +      +              +            + L         ++   
Sbjct: 79  AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + +          +    
Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L        N    P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +     +                      
Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +  +  +         I           +   I+D++A  R 
Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478
           + +  D +S   +L +P     +     +     +      + +   A            
Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 ++   EL          +    +L     R++  +    +    +D L+E ++ 
Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542

Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581
                           +         L   LE+            H    V +MT+HTAK
Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE PVVF+      +F H                                         
Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPT--------------------------------- 629

Query: 642 STQEEYNRLLYVGMTRASDQLIIC 665
               E  RL YVG+TRA  +L + 
Sbjct: 630 -ELSEERRLAYVGITRARQRLYVS 652


>gi|209364296|ref|YP_001425453.2| DNA-dependent helicase II [Coxiella burnetii Dugway 5J108-111]
 gi|207082229|gb|ABS78395.2| DNA helicase II [Coxiella burnetii Dugway 5J108-111]
          Length = 723

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/579 (18%), Positives = 188/579 (32%), Gaps = 115/579 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE+  +++ ++DF          L+    SA +R    Q   HIL+DE QDT+ IQ
Sbjct: 177 VYKAYEDVCRQSGLVDFA---ELLLRTLELLRDSATLREHYQQRFQHILVDEFQDTNTIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +++L  +  V            AVGD+ QSIYS+ GA+ + +    R          
Sbjct: 234 YAWLKALAGEQTV----------FMAVGDDDQSIYSWRGAKIENIHHFSRDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL   + V    +N  G                       LW 
Sbjct: 276 AGVKTIRLEQNYRSTQTILDAANAVIDNNKNRFGKK---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +  +  + F+   +       A  +   I   +               
Sbjct: 314 ------TDSRTGEPITLYTAFNERDE-------AFYVISCIDAWVRQGH----------S 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D+ +L R    + L          D +I           +   IKD +A  R + ++ 
Sbjct: 351 YNDVAILYRSNAQSRLFEECL----IDRQIPYRIYGGLKFFERAEIKDALAYLRLMANRN 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++  P        +  +  T R    ++++  Q            ++  QH I
Sbjct: 407 DDAAFERVVNVPTRGIGNTTLVVLRTTARDHAVSLWQATQHLITNQTLNARALNALQHFI 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQN 542
           + +  L    +     +    +L        +       G   ++ L+E +N T +    
Sbjct: 467 ELVDRLQDETKNLPLAEQTEKMLMGSGLLDLYKKDNSEKGLSRVENLEELINATSQFTPT 526

Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              +L  L + L           ++ H + V +MT+H AKGLE P+V +      +F H+
Sbjct: 527 DDLALSPLDAFLSHVALETGEEQASAHSDCVSLMTLHAAKGLEFPLVIISGLEEDLFPHR 586

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                   +  EE  RL YVGMTRA ++
Sbjct: 587 MSID----------------------------------AANGLEEERRLCYVGMTRAREK 612

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           LI+    +               + +         +   
Sbjct: 613 LILTYTESRRLHGLEKFNQPSRFIQEIPPELIDAVRPTP 651


>gi|237785085|ref|YP_002905790.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757997|gb|ACR17247.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 870

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/753 (12%), Positives = 214/753 (28%), Gaps = 125/753 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +   + P+           + + +             L         ++   
Sbjct: 80  AATEMKERVADLIGPIAERMWVSTFHSMCVRILRAQAN---LIPGLNTNFTIYDSDDSRR 136

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL+           K   ++ +     +LK +L+   +      +  N +          
Sbjct: 137 LLTMIARDMNLDL-KRFASRTVASAISNLKNELRTPDEALADAEEDKNPFN--------- 186

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                + A Y++  + +  +DF+DLI     + ++      +     +   H+L+DE QD
Sbjct: 187 ETVAQIFAEYQKRLRASNAVDFDDLIGEVVRIFREYPE---VALYYRRRFRHVLVDEYQD 243

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++ +L  D    +     P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 244 TNHAQYVLVSTLVGDEGS-EGDSIPPSELCVVGDADQSIYAFRGATIRNIEEFERDYPH- 301

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL+  + V S     +  +                   
Sbjct: 302 -------AETILLEQNYRSTQTILSAANAVISQNSGRREKN------------------- 335

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW  +          ++       +   +       AR +A  I  ++   T      
Sbjct: 336 --LWTAL-------GEGERIVGYVADNEHDE-------ARFVAREIDQLVDNST------ 373

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   DI V  R    +  +  +         +           +   I+D++A  + 
Sbjct: 374 ---INYGDIAVFYRTNNASRALEDIF----IRNGLPYKVVGGTRFYERKEIRDIIAYLKV 426

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKF----- 481
           + + +D +S   ++ +P        +  +         ++   ++  A+  I        
Sbjct: 427 LDNPDDSVSLRRIINTPRRGIGNRALSLLSLYAADHGVSMGAALRAAADGDIPALGSRGN 486

Query: 482 ---QHVIKYIHELIHIAQFC-------------SPHDFFTLILGAKKGRQQFISRFGNE- 524
                 ++ +  L                            ++      +        + 
Sbjct: 487 KAVGRFVEMMDGLREDTADNQLVSHDGDDLGIPDLGAIVNDVIERSGYLESLEGSNDPQD 546

Query: 525 --VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              +D L E ++        +   L            +   A + + + V    V ++  
Sbjct: 547 GARLDNLRELVSVAREFASEAAHQLAYERMPSATASESAPGAGAEDGSSVGSDGVDSSGT 606

Query: 583 LE--------------------------SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                                          V LV    Q+   ++     +        
Sbjct: 607 DSGGGIDTAGDEAFLEEGEPQPGSLQAFLERVSLVSDADQIPDEENGVITLMTLHTAKGL 666

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
             P+        +     +      S   E  RL YVG+TRA  +L I +     +  + 
Sbjct: 667 EFPVVFLTGW-EDGQFPHMRALGDPSELSEERRLAYVGITRAQRRLYISRAVTRGSWGQP 725

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
                   + +   +    ++ +   S +  +W
Sbjct: 726 VNNPASRFIAEIPEDLIHWEREEPQQSWDSGDW 758


>gi|110835551|ref|YP_694410.1| DNA helicase II [Alcanivorax borkumensis SK2]
 gi|110648662|emb|CAL18138.1| DNA helicase II [Alcanivorax borkumensis SK2]
          Length = 720

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 119/722 (16%), Positives = 231/722 (31%), Gaps = 132/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   Q S                +  + + L   S        
Sbjct: 31  GAGSGKTRVLVHRIAWQIATEQASPFGILAVTFTNKAAAEMRGRIEQLLDMSADGMWVGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINKK-SPDLKEKLKKSQDE-----FIKI 110
           F         +      L Q F          + K+ S +L    ++             
Sbjct: 91  FHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSKELGLDEQRWPARQATWFINSQ 150

Query: 111 RDRFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +D     +   +      L  + +   YEEA ++  ++DF ++++   +L +  D    +
Sbjct: 151 KDEGLRARHMDTGGDLFALTMQKIYFAYEEACERGGLVDFNEMLLRVLELFRDND---NL 207

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R    +   HIL+DE QDT+ IQ+  +R L ++             +  VGD+ QSIY +
Sbjct: 208 RGHYQRRFRHILVDEFQDTNSIQYAWLRLLADE----------NNAVTIVGDDDQSIYGW 257

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +  R               I L  ++RST  IL   + V     +  G   
Sbjct: 258 RGAKIENIHKFSRDFP--------DTRTIRLEQNYRSTGTILKAANAVIGHNSDRLGK-- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW           +       S F+ + +       AR I
Sbjct: 308 -------------------ELW-------TEGGDGDLIRLYSGFNEVDE-------ARFI 334

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  +  +    T            +++ VL R    + ++            I       
Sbjct: 335 AGRMDKLFQEGTA----------RREMAVLYRSNAQSRVLEEAF----LQAGIPYRIYGG 380

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               + + IK+ +A  R +  +  D +F  ++ +P        +  +    R    ++++
Sbjct: 381 QRFFERVEIKNALAYLRLLSHRHADAAFERVVNTPTRGIGNKTLETLREVARQRNVSLWD 440

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFIS 519
             Q   +  +      +     +  I +L       S  +    ++ A    +   +   
Sbjct: 441 AAQAVVSEQLLTARAINALAVFLNLIAQLEQQCDGLSLAETTEHVIEASGLLEFHGKEKG 500

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
             G + ++ L E L+ T         S L  L + L+       +    A+ + V++MT+
Sbjct: 501 EKGQQRLENLRELLSATREFGDEDEDSELDSLTAFLDHAALESGEGQADAHEDAVQMMTL 560

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE PVVF+      +F HK   +                                
Sbjct: 561 HSAKGLEFPVVFITGMEEGLFPHKMSSEEPG----------------------------- 591

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                   E  RL YVG+TRA  +L +    +       N       + +         +
Sbjct: 592 -----RLAEERRLCYVGLTRAMRELYLTHAESRRLYGNENYNPPSRFLREIPAETLEEVR 646

Query: 698 IK 699
            +
Sbjct: 647 AR 648


>gi|317165456|gb|ADV08997.1| hypothetical protein NGTW08_2046 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 735

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/584 (17%), Positives = 194/584 (33%), Gaps = 118/584 (20%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L+  Q      ++      +  +     +      A Y++  ++  V+DF +L++ + +
Sbjct: 142 ALRSLQGFINAQKESGLRASVLSAPDPHTSRMIECYAEYDKICQREGVVDFAELMLRSYE 201

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           +L+  ++   +R       NHIL+DE QDT+ +Q+  ++ +                +FA
Sbjct: 202 MLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNAA----------VFA 248

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD+ QSIY F GA    +          A         ++L  ++RS  +IL   + V 
Sbjct: 249 VGDDDQSIYRFRGAHVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVI 300

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
              +   G +                            + D++   +   ++++ D    
Sbjct: 301 ENNDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE- 332

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A+ I      +                  +I VL R    + +I         
Sbjct: 333 -------AQFIVDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----F 371

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I           +   IK  +A  R  ++ +DD + + ++  P        +  + T
Sbjct: 372 RSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQT 431

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
             +E           A    +K    ++ I  L +        +    IL      + + 
Sbjct: 432 ASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRNQVGQMHLSEIIVGILKDSGLTEHYR 491

Query: 519 SRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRA 564
           ++ G   + +D LDE +N  +    E +++ +L E         +++ L        +  
Sbjct: 492 TQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNAALESGENQ 551

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             A    V++MTVH AKGLE   VFL       F  +                       
Sbjct: 552 AGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL-------------------- 591

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                          ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 --------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|260887265|ref|ZP_05898528.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185]
 gi|260863327|gb|EEX77827.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185]
          Length = 766

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/753 (14%), Positives = 218/753 (28%), Gaps = 137/753 (18%)

Query: 34  YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP----QKNIITQEI 89
                       + ++   +            F    + FL ++       +KN +  + 
Sbjct: 65  LAITFTNKAAAEMRERVDRMIGGLGKDVWLSTFHSFCARFLRREIEAGEVYKKNFVIYDT 124

Query: 90  NKKSPDLKEKLKKS------------QDEFIKIRDRFNTYKMFKSTLASLTL--AKYLNA 135
           +     +K  LK+             Q+     ++     + +     +        L +
Sbjct: 125 SDSKTVIKACLKELNLDDKQFAPAKVQNAISNAKNLMLGPRAYARQADTFHAKKIAELFS 184

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  ++N  L   D        +   + +  +R K  +   +ILIDE QDT+  Q+ +
Sbjct: 185 LYDKKLRENNAL---DFDDLLLLAVDLLENNDELRQKYQRRFRYILIDEYQDTNGAQYRL 241

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
              L                L  VGD  QSIY + GA+   +L  ++   +         
Sbjct: 242 TTLLAG----------GHHNLCVVGDADQSIYGWRGADISNILNFEKDFPE--------A 283

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             I+L  ++RST +IL   + V    EN +                        LW    
Sbjct: 284 KTIKLEQNYRSTKNILAAANAVIRNNENRKPKK---------------------LW---- 318

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    ++ +     D   +       AR +  T+                 +   D
Sbjct: 319 ---TENAVGEKIALYQANDERDE-------ARFVVDTVQK---------QKTLFSVDYGD 359

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           I VL R    + ++            I           D + IKD++A    + +  D +
Sbjct: 360 IAVLYRTNAQSRVLEEAM----MTAGIPYTMVGGLKFYDRMEIKDIIAYLHVLYNPFDTV 415

Query: 436 SFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE--------YIQKFANCGISKFQHVIK 486
           S + ++  P        I K+        +++++            F     +  +    
Sbjct: 416 SLLRIINVPKRGIGTSTIAKLTEYAAMREDSLFDVLSSPEALEAMGFKTRTKNLLEAFAA 475

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-N 542
            + +L+          F   +L      +    +   E     + L EF+      E+  
Sbjct: 476 LLFDLMGKLAAMPLSSFIEALLDDTGYIKDLEKQDTPEAQTRIENLREFVGVAREFEKTE 535

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              +L+  ++++               + V +MT+H+AKGLE PVVFLV     +F H  
Sbjct: 536 EEPTLENFLNQIALVSDVDTANME--DDRVTLMTLHSAKGLEFPVVFLVGMEEGIFPHAR 593

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  R  YVG+TRA  +L
Sbjct: 594 TLLEPS----------------------------------EIEEERRTCYVGITRAERKL 619

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            +      +   K N       + +         +    ++  +         +      
Sbjct: 620 YLSYARYRTLYGKGNVYPPSRFLAEIPETYLEKAQAFGRSAFLESR-GMGRPQSAFEILQ 678

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
            L+R               +   P  +    P 
Sbjct: 679 SLQRTTAPSASPSPVPSSPREVRPATSAAIRPS 711


>gi|330838978|ref|YP_004413558.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185]
 gi|329746742|gb|AEC00099.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185]
          Length = 755

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/753 (14%), Positives = 218/753 (28%), Gaps = 137/753 (18%)

Query: 34  YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP----QKNIITQEI 89
                       + ++   +            F    + FL ++       +KN +  + 
Sbjct: 54  LAITFTNKAAAEMRERVDRMIGGLGKDVWLSTFHSFCARFLRREIEAGEVYKKNFVIYDT 113

Query: 90  NKKSPDLKEKLKKS------------QDEFIKIRDRFNTYKMFKSTLASLTL--AKYLNA 135
           +     +K  LK+             Q+     ++     + +     +        L +
Sbjct: 114 SDSKTVIKACLKELNLDDKQFAPAKVQNAISNAKNLMLGPRAYARQADTFHAKKIAELFS 173

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  ++N  L   D        +   + +  +R K  +   +ILIDE QDT+  Q+ +
Sbjct: 174 LYDKKLRENNAL---DFDDLLLLAVDLLENNDELRQKYQRRFRYILIDEYQDTNGAQYRL 230

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
              L                L  VGD  QSIY + GA+   +L  ++   +         
Sbjct: 231 TTLLAG----------GHHNLCVVGDADQSIYGWRGADISNILNFEKDFPE--------A 272

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             I+L  ++RST +IL   + V    EN +                        LW    
Sbjct: 273 KTIKLEQNYRSTKNILAAANAVIRNNENRKPKK---------------------LW---- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    ++ +     D   +       AR +  T+                 +   D
Sbjct: 308 ---TENAVGEKIALYQANDERDE-------ARFVVDTVQK---------QKTLFSVDYGD 348

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           I VL R    + ++            I           D + IKD++A    + +  D +
Sbjct: 349 IAVLYRTNAQSRVLEEAM----MTAGIPYTMVGGLKFYDRMEIKDIIAYLHVLYNPFDTV 404

Query: 436 SFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE--------YIQKFANCGISKFQHVIK 486
           S + ++  P        I K+        +++++            F     +  +    
Sbjct: 405 SLLRIINVPKRGIGTSTIAKLTEYAAMREDSLFDVLSSPEALEAMGFKTRTKNLLEAFAA 464

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-N 542
            + +L+          F   +L      +    +   E     + L EF+      E+  
Sbjct: 465 LLFDLMGKLAAMPLSSFIEALLDDTGYIKDLEKQDTPEAQTRIENLREFVGVAREFEKTE 524

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              +L+  ++++               + V +MT+H+AKGLE PVVFLV     +F H  
Sbjct: 525 EEPTLENFLNQIALVSDVDTANME--DDRVTLMTLHSAKGLEFPVVFLVGMEEGIFPHAR 582

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  R  YVG+TRA  +L
Sbjct: 583 TLLEPS----------------------------------EIEEERRTCYVGITRAERKL 608

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            +      +   K N       + +         +    ++  +         +      
Sbjct: 609 YLSYARYRTLYGKGNVYPPSRFLAEIPETYLEKAQAFGRSAFLESR-GMGRPQSAFEILQ 667

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
            L+R               +   P  +    P 
Sbjct: 668 SLQRTTAPSASPSPVPSSPREVRPATSAAIRPS 700


>gi|317052675|ref|YP_004113791.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
 gi|316947759|gb|ADU67235.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
          Length = 1123

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 154/965 (15%), Positives = 300/965 (31%), Gaps = 134/965 (13%)

Query: 24   PYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER----FSLLSSFFLTQKFT 79
                 + +     L+    +             SQ    E      +  LSS  LTQK T
Sbjct: 229  AGLDEATVASLAELAAYAASNLDENHPLARIDWSQGLGFEAAYTGAWIALSSLLLTQKGT 288

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
             +++      N   P  K  L  +      +          ++   +L     + A Y++
Sbjct: 289  WRRSFTK---NDGFPPPKNALIPA---IKALLQELAASPQAENLCWALQALALIPATYDD 342

Query: 140  -------------AKK---------KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                          K          ++  +DF  + +   + L   D    +  K+D  +
Sbjct: 343  DQWPVLHAINELLLKAVGHLWLVFGRSGCVDFSQMSLAAVEGLGSDDEPTDLALKLDYRL 402

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            NHIL+DE QDTS  Q+ ++R LT  +  G       RTLF VGD  QSIY F  AE    
Sbjct: 403  NHILVDEFQDTSASQYRLLRKLTAGWQPGDG-----RTLFVVGDPMQSIYRFRQAEVGLF 457

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L+ ++           +   + L ++FRSTA I+   +++FS    A             
Sbjct: 458  LQARQQ-----GIGNVQLEPLSLSVNFRSTAAIVHWNNQIFSRVFPAVEEISSGAIAYSA 512

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S+  G+        Q      ++   +                    AR I   I ++ 
Sbjct: 513  SSAFHGEAEGPDCAVQAHLLPTAKAQEE--------------------ARAILACIEDIR 552

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                            + I +L R R            L      S    D   L    A
Sbjct: 553  SRHPG-----------ETIAILARNRTHL----DEIISLLKGGATSFSAIDIAPLAHSGA 597

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-- 475
            ++DL  + R +    D ++++ +L++P    +  D+  +        T+++ +Q+     
Sbjct: 598  VRDLQIITRALCHPGDSIAWLALLRAPWCGLTLADLQLLTAGAD-GRTLWQCLQEATCVE 656

Query: 476  ----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
                 G ++   +   + + +          +         G          E   V   
Sbjct: 657  PLSADGQARLLRIRPALIQAMEERGRQGLARWVEGTWRQLGGPAFLERPAQLEDARV--- 713

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            FL+     E+  +  +Q +   L            +  + +++MT+H AKGLE   V + 
Sbjct: 714  FLHILHSLEEEPFPEIQHMEEALASV---YCSEDPSADSSLQLMTIHKAKGLEFDHVIIP 770

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPI----WIPQSKSRNNIVSDLIKHLKKSTQEEY 647
                   S                    +       + +  +++   + +  ++  + E 
Sbjct: 771  GLCGGSRSESKPLLAWHEGPHRSADMELLLAIARRGRDQKESSLYEYIRQMHQRCMENEQ 830

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             RLLYV  TRA   L +          +         +        +     L ++   +
Sbjct: 831  KRLLYVACTRARKGLHLFARLRPDRSGEDWASPRSGSLLRHIWEQLQPLAPPLPDAPEAE 890

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E    +     P        +     +  + +P    +P ++D  EP             
Sbjct: 891  E----QQQAQPPVPLKRVHSDWQIPRVAPRILPNLAITPAQHDEGEPQP----------- 935

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK----RKNFITSYC--TKNAKLWPAKEY 821
               E   +       G++ H+ ++ +    E +        +      +      P +  
Sbjct: 936  ---EFQWAGEMARLVGVLFHQWVRRLGEKNERESLSGDMEELRKNLRWSTYQLGVPHELR 992

Query: 822  KNLLLSITRLLE----NPMMTTAMS---CDSYSEVSVSGKINCPKKDIIISGRIDQISIS 874
             +++      L     +      +S    DS  E  ++G     ++  I++  ID++ I 
Sbjct: 993  ASVVERTITALGNMGVDQRGRWILSSSHQDSRWEYPLTGT---DQRGHIVNIIIDRMFID 1049

Query: 875  Q-QNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
                 +I +YKT  H    +E         +  QL  Y  +     P   +   L +   
Sbjct: 1050 DQGTRWIIDYKTGQHEGGGLEHFLREEQQRYAPQLERYGFLAGKLGPQ-PVRLGLYFPFH 1108

Query: 930  PKVFI 934
             +   
Sbjct: 1109 QRFVE 1113


>gi|212213503|ref|YP_002304439.1| DNA-dependent helicase II [Coxiella burnetii CbuG_Q212]
 gi|215919328|ref|NP_821025.2| DNA-dependent helicase II [Coxiella burnetii RSA 493]
 gi|206584213|gb|AAO91539.2| DNA helicase II [Coxiella burnetii RSA 493]
 gi|212011913|gb|ACJ19294.1| DNA helicase II [Coxiella burnetii CbuG_Q212]
          Length = 723

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/579 (18%), Positives = 188/579 (32%), Gaps = 115/579 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE+  +++ ++DF          L+    SA +R    Q   HIL+DE QDT+ IQ
Sbjct: 177 VYKAYEDVCRQSGLVDFA---ELLLRTLELLRDSATLREHYQQRFQHILVDEFQDTNTIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +++L  +  V            AVGD+ QSIYS+ GA+ + +    R          
Sbjct: 234 YAWLKALAGEQTV----------FMAVGDDDQSIYSWRGAKIENIHHFSRDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL   + V    +N  G                       LW 
Sbjct: 276 AGVKTIRLEQNYRSTQTILDAANAVIDNNKNRFGKK---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +  +  + F+   +       A  +   I   +               
Sbjct: 314 ------TDSRTGEPITLYTAFNERDE-------AFYVISCIDAWVRQGH----------S 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D+ +L R    + L          D +I           +   IKD +A  R + ++ 
Sbjct: 351 YNDVAILYRSNAQSRLFEECL----IDRQIPYRIYGGLKFFERAEIKDALAYLRLMANRN 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++  P        +  +  T R    ++++  Q            ++  QH I
Sbjct: 407 DDAAFERVVNVPTRGIGNTTLVALRTTARDHAVSLWQATQHLITNQTLNARALNALQHFI 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQN 542
           + +  L    +     +    +L        +       G   ++ L+E +N T +    
Sbjct: 467 ELVDRLQDETKNLPLAEQTEKMLMGSGLLALYKKDNSEKGLSRVENLEELINATSQFTPT 526

Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              +L  L + L           ++ H + V +MT+H AKGLE P+V +      +F H+
Sbjct: 527 DDLALSPLDAFLSHVALETGEEQASAHSDCVSLMTLHAAKGLEFPLVIISGLEEDLFPHR 586

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                   +  EE  RL YVGMTRA ++
Sbjct: 587 MSID----------------------------------AANGLEEERRLCYVGMTRAREK 612

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           LI+    +               + +         +   
Sbjct: 613 LILTYTESRRLHGLEKFNQPSRFIQEIPPELIDAVRPTP 651


>gi|23502284|ref|NP_698411.1| DNA helicase II [Brucella suis 1330]
 gi|161619361|ref|YP_001593248.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365]
 gi|254704671|ref|ZP_05166499.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 3 str. 686]
 gi|260566081|ref|ZP_05836551.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
 gi|261755364|ref|ZP_05999073.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686]
 gi|23348259|gb|AAN30326.1| DNA helicase II [Brucella suis 1330]
 gi|161336172|gb|ABX62477.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365]
 gi|260155599|gb|EEW90679.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40]
 gi|261745117|gb|EEY33043.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686]
          Length = 858

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 195/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEVP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|260577850|ref|ZP_05845783.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734]
 gi|258604009|gb|EEW17253.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734]
          Length = 950

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/759 (13%), Positives = 208/759 (27%), Gaps = 180/759 (23%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  + +    +          A  L         ++  
Sbjct: 191 AAAEMRERVVDMVGPQAERMWVSTFHSFCVRVLRANAH----LAPGLNTNFSIYDSDDS- 245

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L +  +       K    + +     + K +L        + +   N +    +T   
Sbjct: 246 KRLMTMIIKDASLDLKEFSPRGVLNVISNWKNELVGPAGALEEAQRDSNPHTAQIAT--- 302

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 L   Y+   +    +DF+DLI     +L        +R    +   HI++DE Q
Sbjct: 303 ------LYKTYQNRLRAANAVDFDDLIGEVVAILNNNPD---VREHYRRRFRHIMVDEYQ 353

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+E++ +L                L  VGD  QSIY+F GA  + +   +R    
Sbjct: 354 DTNHAQYELVAALAGKGKA-------ECELCVVGDADQSIYAFRGATIRNIEEFERDYP- 405

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I L  ++RST  IL+  + V    +  +                     
Sbjct: 406 -------DAHTILLEQNYRSTQKILSAANAVIDRNQGRRPKK------------------ 440

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW           + +        +   +       A  I   I +++  +      
Sbjct: 441 ---LW-------TDLGDGELIGGYVADNEHDE-------ANFIVEQIDDLVDNE------ 477

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   DI ++ R    +  I  +         +           +   I+D++A  +
Sbjct: 478 ---GYSYGDISIMYRTNNASRAIEDVL----VRSGMPYKVVGGTRFYERREIRDIVAYLK 530

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK--------FANCG 477
            + + +D ++   ++ +P     +  I ++      +       +           +  G
Sbjct: 531 VLDNADDTVALRRIINTPRRGIGDKAIAQVTVHAEGQGIGFSAALGDAAAGKVAGLSARG 590

Query: 478 ISKFQHVIKYIHELIHIAQFC-------------SPHDFFTLILGAKKGRQQFISRFGNE 524
            +     ++ +  L    +                     + +L     ++        +
Sbjct: 591 RNSIGKFLEMMDALRAETESMEMTASDGSGLGLPDLGRVISAVLDMTGYKELLEKSNDPQ 650

Query: 525 ---VIDVLDEFLNFTLRNEQNS-------------------------------------- 543
               +D L+E ++      Q S                                      
Sbjct: 651 DGARLDNLNELVSVGHEFSQESANLKAYEEMPGGGTAGSAGSSDGSAGDTADAMLTEGEA 710

Query: 544 -YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              SLQ  +  +       +       + V +MT+HTAKGLE PVVFL       F H  
Sbjct: 711 PLGSLQAFLERVSLVADADQIPADE-QDMVTLMTLHTAKGLEFPVVFLTGWEDGQFPHMR 769

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                      E  RL YVG+TRA  +L
Sbjct: 770 ALGDPT----------------------------------ELAEERRLAYVGITRAKQRL 795

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            + +    S             + +   +     + +  
Sbjct: 796 FLTRAITRSGWGAPVNNPPSRFLSEVPEDLMEWIREEPA 834


>gi|313835931|gb|EFS73645.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA2]
 gi|314927226|gb|EFS91057.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL044PA1]
 gi|314970659|gb|EFT14757.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA3]
 gi|328906126|gb|EGG25901.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. P08]
          Length = 810

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/601 (16%), Positives = 190/601 (31%), Gaps = 128/601 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + A Y+   +    LDF+DLI+ T  LL++      +R +  +   H+L+DE QDT+  
Sbjct: 208 EVYAEYQRRLRAANALDFDDLIMCTVTLLRQFPE---VREQYRRRFRHVLVDEYQDTNTA 264

Query: 192 QWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           Q++ IR L  D             P  L  VGD  QSIY+F GA  + +L  ++      
Sbjct: 265 QYQFIRELCGDDPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNILDFEKDFP--- 321

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I L  ++RST  IL+  + +  +  +    +                    
Sbjct: 322 -----GARTILLEQNYRSTQTILSAANNLIKMNPSRPVKN-------------------- 356

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW         Q +  +           +       A  +A  I  ++           
Sbjct: 357 -LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT------ 395

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  + V  R    +     +         +           +   ++D ++  R I
Sbjct: 396 ---SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSYLRAI 448

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKF 481
            +  DD+S   +L +P           +         + +E +++       A   +++ 
Sbjct: 449 ANPSDDVSLRRILNTPRRGIGTRAEAAVEMFATARRISFWEALKRIDEIDALATRSVNQI 508

Query: 482 QHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
           +  +  + + I + +      +  + IL       +  +    +    ++ L E  +   
Sbjct: 509 RAFVSLMDDHIAMVEQGKRADEIASSILKESGYIAELENSKDPQDETRLENLIELASVAQ 568

Query: 538 RN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                                 E +   SL   + ++     + +    ++   V +MT+
Sbjct: 569 EFVARVHTVDIEEAEQDTVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVTLMTL 627

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           HTAKGLE   VF+      VF H                                     
Sbjct: 628 HTAKGLEFDTVFITGFEDGVFPHMRSL--------------------------------- 654

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
               +   E  RL YVG+TRA  QL + + S  +   ++        V +        ++
Sbjct: 655 -ADATELSEERRLAYVGITRARKQLFLSRASVRTMWGEAQYNPPSRFVDEIPPRLIDWER 713

Query: 698 I 698
           I
Sbjct: 714 I 714


>gi|28572258|ref|NP_789038.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27]
 gi|28410389|emb|CAD66775.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27]
          Length = 743

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/588 (17%), Positives = 191/588 (32%), Gaps = 114/588 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               ++   Y+E  K+    DF+DLI  T  LL+K      I         ++L+DE QD
Sbjct: 181 QFILHVFRRYQEILKEANAFDFDDLISETVFLLQKSPE---ISAMYRNRWKYLLVDEYQD 237

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +I  LT+      +       L AVGD  QSIY+F GA+   ++  +      
Sbjct: 238 TNHAQYRLILELTKGDKSDMS-------LTAVGDSDQSIYAFRGADIANIVNFENDFP-- 288

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RS  +IL   + + S  +N +  +                   
Sbjct: 289 ------DCHTILLEQNYRSCQNILLAANALISNNQNRKDKN------------------- 323

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW ++          ++        +  +        R +A  + +++          
Sbjct: 324 --LWSEL-------GAGEKVVAYCASSAEEEG-------RFVADRVRHLVDQGESL---- 363

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI V  R    +  I            I           +   IKD++A    
Sbjct: 364 ------SDIAVFYRSNTQSRAIEESL----IRQSIPYRVVGGTKFYERAEIKDILAYLTV 413

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF-ANCGISKFQHVI 485
           I++ +D L+   +L  P          ++         T+ + + +          +  +
Sbjct: 414 IVNPDDTLALRRILNVPKRGVGTVSENRLVEFASARGITLMQALSRIDEINIQPSAKSAL 473

Query: 486 KYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNE 540
           + +  L++         ++    +L A     +F +    +       + +F++      
Sbjct: 474 RDLFYLLNRFAGSSMPANELLDDLLKATDLLSRFNNTDDPQNEARKINIGDFVDSVEDFA 533

Query: 541 QNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +    L + ++ +     T          ++ +MT+H AKGLE   VFL      +  
Sbjct: 534 KENPGGTLSDFMTNIALM--TSYDQSDDAPGQITLMTLHMAKGLEFDFVFLTGLEEGILP 591

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+   K                                  +K+  EE  RL YVGMTRA 
Sbjct: 592 HEMSLK----------------------------------EKNGIEEERRLAYVGMTRAK 617

Query: 660 DQLII---CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             L +         ++  +   R W ++         R    + T  +
Sbjct: 618 KVLHLSFSSYRKRYTDGVRLPSRFWDEIPQHLLRWHSRFTHKRFTGPL 665


>gi|302343284|ref|YP_003807813.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
 gi|301639897|gb|ADK85219.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
          Length = 1159

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 138/982 (14%), Positives = 281/982 (28%), Gaps = 104/982 (10%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             + +   P    S       L+          KA+  Q  +      E++  L       
Sbjct: 189  AELIDAGPKALASMDQAARDLATALAAVAPKNKAKPPQYFNDLTAFLEQWPELRPKLAQS 248

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST----LASLTLAKY 132
            +      ++  ++        E++  ++        +     M             L + 
Sbjct: 249  EPDLATAMLAHKMLGGDRGKDERIVNARAILKNEATKIAQAAMAPLAGGLADDLFVLQER 308

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            L+        +   L F+D        L+       +   +      +++DE QD + +Q
Sbjct: 309  LSQAVATECARLAALSFDD---LLLGALRLLRQRPELLPALRGRFRALMVDEFQDVNPVQ 365

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
              ++  L        +       L  VGD KQSIY+F GA+     +     +      G
Sbjct: 366  GALVGLLCG--LGSDDPGPDAPLLLIVGDRKQSIYAFRGADVSLYNQTMADFE-----GG 418

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                +  L  +FRS   ++   +++F                 +H               
Sbjct: 419  GPGVLAALRRNFRSDPRLVEFFNRLFDQVFAQG-------KNRQHAPHAYVDFRDDDRQR 471

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
               +  D    P  E      D    E   +  A  +A  ++ ++             ++
Sbjct: 472  PGRAAGDFSGGPALELLHCGGDDQNAEQRRAREATALAAHLAGLVAGGQ---------VR 522

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
               I +L+RK     +     R       +               + D++   R +L  +
Sbjct: 523  PGQIAILLRKLTAVRVYEEALR----RQDLDFCTVKGKGFFGCQEVADVVMAMRALLWPD 578

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV------YEYIQKFANCGISKFQHVIK 486
            DDL+   +L+SPL   S++ +  +     + +                     +     +
Sbjct: 579  DDLAVTALLRSPLVGLSDESLLAMAHHGPQLKPSQALAQGRALPDWLPTEQHERLSMARR 638

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYS 545
             + +L   A+  +P +  T ++ A    Q       G +    L + +      +    +
Sbjct: 639  LLADLGPRARRMTPAELITAVIEAGDYMQVLAGLPSGEQKAANLRKLIETAREYDDGVEA 698

Query: 546  SLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             L+ L++ L Q P   +   + +  + VRIMT+H AKGL+ PVV L D   Q        
Sbjct: 699  CLRRLMAMLAQDPGDAQAPLAGDDGQIVRIMTIHQAKGLQFPVVVLADLAGQAGGGPRAL 758

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
             +    +    P    +    +    I   L +      + E  RL YV  TRA ++L++
Sbjct: 759  -VGPDQNGVISPRPIDFASGQRLETAIHQRLSQRATAIEEAESARLFYVACTRAQERLVL 817

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
            C  +                   +       +     +     + +A   +       P 
Sbjct: 818  CMSAGKRPGP---------WQKWADAFIAGDELASHVDLGVVGDAVADAPALGPAAAWPD 868

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL---------- 774
                    L +E ++  +               + S ++          L          
Sbjct: 869  YLPAEAGPLAEEGRMLAQRCLIRPALGPAAVRASVSAVEDFWACPRRFFLTQRLGLDTAL 928

Query: 775  ----------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                         Q    G + H LLQ +           +T       K          
Sbjct: 929  LPGMGGTGGDDPAQAARLGSLAHMLLQQVDLAAGAAGLELLTESLLAAGK-ADGGLLTQA 987

Query: 825  LLSITRLLEN---PMMTTAMSCDSYSEVSVSG--KINCPKKDIIISGRIDQIS-ISQQNI 878
             L      +      +     C  + E               + + G  D ++ +     
Sbjct: 988  SLMAGHFFQTDLAAALAQLPPCTVFREQPFLLCLPGQGGGPGLELRGEFDLLAPMEDGRW 1047

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL------KDSYPNKSL-------VCLLI 925
             I +YK    +       P  +  Q+ IY   L      +   P +++          L 
Sbjct: 1048 LIVDYKVGRRLD------PAKYHGQMLIYAAALWSGGKDQAMAPPRAVLAHLGPERAALH 1101

Query: 926  YVSEPKVFIIPQNKLNKAFAEI 947
            Y+           +L++A  ++
Sbjct: 1102 YL------EFTAAQLDQALEDL 1117


>gi|70733445|ref|YP_263220.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf-5]
 gi|68347744|gb|AAY95350.1| DNA helicase II [Pseudomonas fluorescens Pf-5]
          Length = 727

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/641 (18%), Positives = 211/641 (32%), Gaps = 124/641 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        LS  F       Q+ ++ + I +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LSQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    L   + +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPQHIQASGDLFLATMRGIYEAYEAACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 HPG---LLAHYQKRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + + +   
Sbjct: 252 DQSIYGWRGAKIENIHQYSADFP--------DTEVIRLEQNYRSTAGILKAANALIANNT 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDGGDGEAINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           +   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------LARSDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E +++                  I+ I  L         H     ++       
Sbjct: 435 SDVSMWEAMRQLVANKGLTGRAAGALGAFIELIENLAAKTLEMPLHLMTQTVIEQSGLIA 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570
             +      G   ++ L+E ++     E       L  L + L              + +
Sbjct: 495 YHEAEKGEKGQARVENLEELVSAARNFENTEEDEDLTPLAAFLGHASLEAGDTQADEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SVQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                         EE  RL YVG+TRA   L++       
Sbjct: 593 ------------RLEEERRLAYVGITRAMQNLVMTYAETRR 621


>gi|33152168|ref|NP_873521.1| DNA-dependent helicase II [Haemophilus ducreyi 35000HP]
 gi|33148390|gb|AAP95910.1| DNA helicase II [Haemophilus ducreyi 35000HP]
          Length = 729

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/549 (19%), Positives = 186/549 (33%), Gaps = 117/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  +LDF +L+I   +L K   V   I  +       ILIDE QDT+ I
Sbjct: 176 QIYQIYQEACDRAGLLDFAELLIRAYELFKNNRV---ILERYQHRFQQILIDEFQDTNHI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I+ L                +  VGD+ QSIY + GA+ + + R  +  ++     
Sbjct: 233 QYDLIQLLAG----------KTGNVVIVGDDDQSIYGWRGAQVENIQRFLQDYRQ----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ +   +  G +                     LW
Sbjct: 278 ---AQTIRLEQNYRSTGHILASANQLIANNNDRLGKN---------------------LW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    + +         F+ L +       AR +A  I                  
Sbjct: 314 -------TDKGDGDPVDIYCAFNELDE-------ARFVASQIKQWKEEQGSL-------- 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + +I            I           +   IKD +A  R I ++
Sbjct: 352 --NDCAILYRSNSQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLISNR 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQHV 484
           +DD +F  ++ +P     +  +  +    R    T+++        Q  +    S     
Sbjct: 406 DDDAAFERVINTPPRGIGDRTLEGLRQLTRSRQVTLWQAVQIAIQEQHLSARAASALLRF 465

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ I+ L       S  +    ++      + +    G +    I+ L E +  T    +
Sbjct: 466 VELINALEQETTQMSLCEQTDFVIKTSGLYEMYKQEKGEKGEVRIENLAELVTATKEFCK 525

Query: 542 NSYS-SLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              +  L +L + L           ++ + + V +MT+H AKGLE P VF+V     +F 
Sbjct: 526 PDDAIELSDLTAFLTHASLEAGENQASLHQDYVELMTLHAAKGLEFPRVFIVGMEEGLFP 585

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                    +P                                   E  RL YVG+TRA 
Sbjct: 586 SGISFDEGRLP-----------------------------------EERRLAYVGITRAK 610

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 611 QRLTISYAE 619


>gi|325955681|ref|YP_004239341.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
 gi|323438299|gb|ADX68763.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
          Length = 772

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/622 (16%), Positives = 197/622 (31%), Gaps = 125/622 (20%)

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKS-TLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
             +  ++ + ++  I +R  FN  ++ ++ T A       +   Y +   K+  +DF+DL
Sbjct: 138 KQVLNRISQFKNNLITVRAYFNNPQLIEADTEAMKPRMGDIYKAYVDRCYKSGAMDFDDL 197

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           ++ TN++L        +  K      +I++DE QDT+  Q+ ++++L   +         
Sbjct: 198 LLRTNEILT---CFPEVLAKYQDRFRYIMVDEYQDTNHSQYLIVKALASRYE-------- 246

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
              +  VGD+ QSIY+F GA  + +L  ++              +  L  ++RST  I+ 
Sbjct: 247 --NVCVVGDDAQSIYAFRGANIRNILSFQKDYP--------DAKVFPLEQNYRSTKIIVG 296

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
             +++ +  ++    +                     +W       D++   +   + + 
Sbjct: 297 AANQLIAHNQDQLKKN---------------------VW------TDNEEGDKITVYRAL 329

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
            D+          AR IA  I         F       +   D  +L R    +  +   
Sbjct: 330 SDADE--------ARYIASRI---------FETQMSEQLPLSDFAILYRTNAQSRALEEA 372

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R       I               IKD+++  R +++Q D+ + + ++  P     +  
Sbjct: 373 LR----KKGIPYRVFGGISFYQRKEIKDMVSYMRLLINQNDEEALLRVINYPARGIGQTT 428

Query: 453 IFKICTQRH----------ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           I K+    +          E    Y           +K       I     + Q    ++
Sbjct: 429 INKLLLAANQYNIHIFQLLENIQFYAPNISINTATANKLNDFAVMIKRFQLMLQTHDVYE 488

Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISE 553
               +  + K           E    ++ + E LN            ++   SL   +  
Sbjct: 489 VTMELAKSTKFLSTLKEDDTPEGISRLENVQELLNSIQGYVDEQKQLEDGDPSLAGFLEN 548

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +                 V +MTVH AKGLE P VF+      +F               
Sbjct: 549 IALATDADTDNDDTEK--VSLMTVHLAKGLEFPHVFIAGLEENLFPSMMNLNT------- 599

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                      +   EE  RL YV +TRA     +    +    
Sbjct: 600 ---------------------------RQDLEEERRLFYVALTRAEKNAYLTYSVSRFRW 632

Query: 674 KKSNQRTWYDMVYDSFHNDERV 695
            K         + +   N  + 
Sbjct: 633 GKIIDSEPSRFLEEIDDNHLQW 654


>gi|118466048|ref|YP_880325.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104]
 gi|118167335|gb|ABK68232.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104]
          Length = 774

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/749 (14%), Positives = 207/749 (27%), Gaps = 141/749 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + +    +     +        +            + L         ++   
Sbjct: 77  AAAEMRERVVR---LVGNRARAMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRR 133

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + D          +    
Sbjct: 134 LLQMIGRDMGLDI-KRYSPRLLANAISNLKNELIDPAAAVANLTDD---------SDELS 183

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 184 RTVASVYGEYQRRLRAANALDFDDLIGETVAVLR---AFPQIAQHYRRRFRHVLVDEYQD 240

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L             P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 241 TNHAQYVLVRELVG---TDTEDGVPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 295

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I L  ++RST +IL+  + V +     +                      
Sbjct: 296 ------DATTILLEQNYRSTQNILSAANSVIARNSGRRDKR------------------- 330

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 331 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAQKGE------ 368

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +     +         I           +   I+D++A  R 
Sbjct: 369 ---ITYNDVAVFYRTNNSSRSFEEVF----IRAGIPYKVVGGVRFYERKEIRDIIAYLRV 421

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIK 486
           + +  D +S   +L +P     +     +     +   +  + +   A   +       +
Sbjct: 422 LDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNSRAE 481

Query: 487 Y-------IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                   + + +         D    +L     R++  S    +    +D L+E ++  
Sbjct: 482 KAIAGFVELLDDLRGRLDDDLGDLVESVLERTGYRRELESSTDPQELARLDNLNELVSVA 541

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRA--------------------HSANHNEVRIMT 576
                   ++   L   L+                                    V +MT
Sbjct: 542 HEF-STDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTLMT 600

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +HTAKGLE PVVF+      +F H       +                            
Sbjct: 601 LHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPV---------------------------- 632

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                    E  RL YVG+TRA  +L + +    S+  +         + +        +
Sbjct: 633 ------ELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLNPESRFLREIPQELIEWR 686

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725
           +     S +     A  + T     T   
Sbjct: 687 RTAPAPSFSAPVSGAGRFGTPRAAPTRAA 715


>gi|309379347|emb|CBX22120.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 735

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 188/583 (32%), Gaps = 120/583 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++   +  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICHREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +                +FAVG
Sbjct: 204 QSNEI---LRRHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNTA----------VFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                AR I   I  +                  +I VL R    + +I           
Sbjct: 333 -----ARFIVDEIKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ- 459
            I           +   IK  +A  R  ++ +DD + + ++  P        +  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           + +  ++++                ++ I  L +        +    IL      + + +
Sbjct: 434 QEQGVSLWQAACNTGAKAAKV-AAFVRLIEALRNQVGQMPLPEIIAGILKDSGLTEYYQT 492

Query: 520 RFG--NEVIDVLDEFLNFTLRN-----------EQNSYSSLQELISELEQYPPTI-KRAH 565
           + G   + +D LDE +N  +             +  S      +++ L        +   
Sbjct: 493 QKGDNQDRLDNLDELVNAAVEFKPEDSNFGIMPDNISDDPAFPILAFLSNAALESGENQA 552

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            A    V++MTVH AKGLE   VFL       F  +                        
Sbjct: 553 GAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL--------------------- 591

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                         ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 -------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|163843668|ref|YP_001628072.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445]
 gi|163674391|gb|ABY38502.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445]
          Length = 858

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 194/694 (27%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +  L +                                           L  VGD
Sbjct: 269 AQYLWLHLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|262276890|ref|ZP_06054683.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114]
 gi|262223993|gb|EEY74452.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114]
          Length = 742

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/607 (18%), Positives = 203/607 (33%), Gaps = 123/607 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y++       +DF DLI++   +LKK +    I     +   +IL+DE QDT+
Sbjct: 170 ALKVYKIYQKKLLVMNCVDFGDLILHVVTILKKFEDIKKI---YQRNFKYILVDEFQDTN 226

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q   ++ LT +           + +  VGD+ QSIYS+ GAE K +L  K   Q    
Sbjct: 227 YVQNFWLQLLTSE----------KKNICVVGDDDQSIYSWRGAEVKNILEFKNNYQN--- 273

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +IL     + S  E+    +                     
Sbjct: 274 -----TQTIKLEQNYRSTENILNSATSLISNNEDRLEKN--------------------- 307

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W ++        + ++    SYFD + +       A  ++  I   +           +
Sbjct: 308 IWSEL-------GDGEKVKIKSYFDGISE-------ATGVSDIIEQNLS----------K 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  +I +LVR    T               +           +   IKD +   R I 
Sbjct: 344 KFKLNEISILVRAAFQTREFEERF----IKIGLPYRIIGGLKFYERSEIKDALGYLRLIN 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQ 482
              DD+SF  ++ +P  +  +  I KI    R +  ++++  ++     I K       +
Sbjct: 400 QSSDDISFERIINNPKRSIGDSSIKKIHDFAREKDLSLFDASKEILKENILKPKTIQNLK 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539
             +  +       +         ++L          +    E     + L E  +     
Sbjct: 460 SFLVNMISWKQKCKDIDHISLLEIVLDESGYSSMLKNERTPEADARLENLKELKSSMKNY 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                     L   LE            +  ++ IMT+H+AKGLE   VFL      +F 
Sbjct: 520 --------SSLNEFLENISLQTAIDEEWDGEKINIMTIHSAKGLEFDAVFLPGWEEGLFP 571

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                  I        EE  RL YV +TRA 
Sbjct: 572 HQKS--------------------------------IDEKGADGIEEERRLAYVAITRAK 599

Query: 660 DQLIICKHSNTSNEKKSNQRTWYD---MVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            +L I   +      + N    +            D++  KI + +S   +     +++ 
Sbjct: 600 KELFISFANQRKFYGRQNDNYDFYSSLQSRFIDEIDDKYTKISIDDSTEDEFIFDQDFNI 659

Query: 717 HHPENTP 723
              +N+P
Sbjct: 660 EGKKNSP 666


>gi|291327137|ref|ZP_06127128.2| DNA helicase II [Providencia rettgeri DSM 1131]
 gi|291311697|gb|EFE52150.1| DNA helicase II [Providencia rettgeri DSM 1131]
          Length = 723

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/694 (16%), Positives = 220/694 (31%), Gaps = 132/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +     S  +             +  +   L   S+       
Sbjct: 33  GAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRINQLIGTSEGGMWIGT 92

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L Q        ++    + + +   ++  LK    +  +   R         
Sbjct: 93  FHGLAHRLLRQHYMDANLPQDFQILDSDDQYRLIRRLLKAMNLDEKQWPPRQGMWYINGK 152

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +             +   Y+EA  +  ++DF +L++  ++L   +     +
Sbjct: 153 KDEGLRPQHIEAYGNPVEATWLKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---V 209

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   +IL+DE QDT+ IQ+  IR L  +             +  VGD+ QSIY +
Sbjct: 210 LQHYRERFTNILVDEFQDTNNIQYAWIRVLAGE----------TGKVMIVGDDDQSIYGW 259

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R                  I L  ++RST +IL   + + +   +  G + 
Sbjct: 260 RGAQVENIQRFLNDFP--------GAETIRLEQNYRSTNNILKAANALIANNSDRLGKN- 310

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW           + +  S    F+ L +       AR +
Sbjct: 311 --------------------LW-------TEGGDGEPISLYCAFNELDE-------ARYV 336

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                    +D  +L R    + ++            +       
Sbjct: 337 VGRIKQWHENGGAL----------QDCAMLYRSNAQSRVLEEAL----IQGAMPYRIYGG 382

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD ++  R I ++ DD SF  ++ +P     +  +  +    R +  T++E
Sbjct: 383 QRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGDRTLDTVRQTARDQQLTLWE 442

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +             +  +  ++ +  L    Q    H     ++     R  +    G
Sbjct: 443 SCEYLLREQVLGGRAAAAIERFLELVDALAKETQDMPLHVQADRVINDSGLRAMYEQEKG 502

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +     + L+E +N T     Q+    L  L + L              + + V++MT+
Sbjct: 503 EKAQARIENLEELVNATRDFSYQDEDQDLMPLQAFLSHAALEAGDGQADVSQDAVQLMTL 562

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE PVVF+V     +F  +                                    
Sbjct: 563 HSAKGLEFPVVFIVGMEEGMFPSQMSMDESG----------------------------- 593

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                  EE  RL YVG+TRA ++L I    +  
Sbjct: 594 -----RLEEERRLAYVGITRAMEKLTITYAESRR 622


>gi|316985163|gb|EFV64115.1| DNA helicase II [Neisseria meningitidis H44/76]
 gi|325141072|gb|EGC63575.1| DNA helicase II [Neisseria meningitidis CU385]
 gi|325199439|gb|ADY94894.1| DNA helicase II [Neisseria meningitidis H44/76]
          Length = 735

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/582 (17%), Positives = 193/582 (33%), Gaps = 118/582 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++  ++  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +  +             +FAVG
Sbjct: 204 QNNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                AR I      +                  +I VL R    + +I           
Sbjct: 333 -----ARFILDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IK  +A  R  ++ +DD + + ++  P        +  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E           A    +K    ++ I  L +     S  +    IL      + + ++
Sbjct: 434 NEQGITLWQAACNAGAKAAKVVAFVRLIEALRNQVGQLSLSEIIVGILKDSGLTEHYRTQ 493

Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566
            G   + +D LDE +N  +    E +++  L E         +++ L        +    
Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFEILPENISDDPAFPILAFLSNAALESGENQAG 553

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A    V++MTVH AKGLE   VFL       F  +                         
Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                        ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|312881427|ref|ZP_07741222.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370909|gb|EFP98366.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 724

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 182/549 (33%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++   +LL+       IR        HIL+DE QDT+ I
Sbjct: 173 QLYRAYQEACDRAGLVDFAEILLRAQELLRDN---KHIRQHYQTRFKHILVDEFQDTNNI 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +            
Sbjct: 230 QYAWLRLMAGPDTH----------VMIVGDDDQSIYGWRGAKVENIEKFTVEFP------ 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 274 --SVNTIRLEQNYRSTKTILDASNALIANNTERMGK---------------------ELW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I        +         
Sbjct: 311 -------TDGSAGEPISVYSAYNELDE-------ARFAVSKIKEWQEKGGVL-------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R + ++
Sbjct: 349 --TDTAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T+++                      
Sbjct: 403 NDDAAFERVVNTPTRGLGDKTLETIRFAARDRGCTLWKASTSLLEEQVLPGRAAGALGRF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ +H L    +  S H     ++ +      +    G +    I+ L+E +  T + E+
Sbjct: 463 IELVHALEDDTKEMSLHQQTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 522

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 523 PEEAEDMPLLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 582

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 583 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 608

Query: 660 DQLIICKHS 668
           ++L I    
Sbjct: 609 EKLYITYAE 617


>gi|304389059|ref|ZP_07371104.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC
           13091]
 gi|304336989|gb|EFM03178.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC
           13091]
          Length = 735

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                S  +    IL      + + ++ G   + +D LDE +N  +    E +++  L E
Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|148978468|ref|ZP_01814942.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3]
 gi|145962375|gb|EDK27655.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3]
          Length = 724

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/548 (18%), Positives = 186/548 (33%), Gaps = 116/548 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           + + Y+EA  +  ++DF ++++ +++LL+       IR        HIL+DE QDT+ IQ
Sbjct: 174 IYSAYQEACDRAGLVDFAEILLRSHELLRD---KKHIREHYQARFKHILVDEFQDTNNIQ 230

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R +                +  VGD+ QSIY + GA+ + + +             
Sbjct: 231 YAWLRMMAG----------PDCRVMIVGDDDQSIYGWRGAKIENIQKFLDEFP------- 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              S I L  ++RST  IL   +++ S      G                      +LW 
Sbjct: 274 -GASTIRLEQNYRSTKTILQASNELISNNTERMGK---------------------ELW- 310

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +  S  S ++ L +       AR     I                   
Sbjct: 311 ------TDGNDGEPISVYSAYNELDE-------ARFTVSKIKEWQEKGGALE-------- 349

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            +           +   IKD ++  R + ++ 
Sbjct: 350 --DTAMLYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYLRLMGNRN 403

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P     +  +  I    R    T+++                      I
Sbjct: 404 DDAAFERVVNTPTRGLGDKTLETIRFAARDRGATMWQASIALLEEQVLPGRAAGALSRFI 463

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L       + H+    ++ +      +    G +    I+ L+E +  T + E+ 
Sbjct: 464 ELINALEDDTLELNLHEQTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKP 523

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F  
Sbjct: 524 EEADEMSMLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPS 583

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                      +    EE  RL YVGMTRA +
Sbjct: 584 QMS----------------------------------AEEAGRLEEERRLCYVGMTRAME 609

Query: 661 QLIICKHS 668
           +L I    
Sbjct: 610 KLYITYAE 617


>gi|295133070|ref|YP_003583746.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia
           profunda SM-A87]
 gi|294981085|gb|ADF51550.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia
           profunda SM-A87]
          Length = 773

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/644 (16%), Positives = 207/644 (32%), Gaps = 128/644 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +   K   +DF+DL++ TN+LL +      +  K      +IL+DE QDT+  
Sbjct: 177 DIYQEYVQRCFKAGAMDFDDLLLKTNELLNRFPE---VLQKYQNRFRYILVDEYQDTNHS 233

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ ++++L++ F          + +  VGD+ QSIY+F GA    +L  ++         
Sbjct: 234 QYLIVKALSDKF----------QNICVVGDDAQSIYAFRGANINNILNFQKDYD------ 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +  L  ++RST +I+   + +    +        +                    
Sbjct: 278 --GVEMYRLEQNYRSTGNIVNAANSIIDKNQTKLDKVVWTA------------------- 316

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   +   P+        D            R +A +I         F N  ++ +
Sbjct: 317 --------NDDGPKIVVNRLLTDGEEG--------RFVASSI---------FENKMQQQM 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    +  +    R       I               IKD+++  R +++ 
Sbjct: 352 ANGDFAILYRTNAQSRAMEDALR----KKDIPYRIYGGLSFYQRKEIKDVLSYLRLLINP 407

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGISKFQ 482
           +D+ +   ++  P        + ++        ++++E ++   +           +K  
Sbjct: 408 KDEEALKRVINYPARGIGATTMDRLSIAANKYGKSIFEVLENLDHLPELKITKSTRTKLD 467

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           + +  I     +AQ          +       Q+       E    I+ ++E LN     
Sbjct: 468 NFVNMIKHFTILAQNADAFTVADTVTKKTGLVQELKKDGTPEGIARIENIEELLNGIKDF 527

Query: 540 --EQNSYSSLQE-LISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             EQ   +     +   LE             + + V +MT+H AKGLE P V++V    
Sbjct: 528 VEEQKELADANGSIAEFLEDVALATDMDKDTEDEDRVALMTIHLAKGLEFPYVYIVGMEE 587

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                     +    +S  EE  RL YV +
Sbjct: 588 DLFPS----------------------------------AMSMNTRSELEEERRLFYVAV 613

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVY---------DSFHNDERVKKIKLTNSINK 706
           TRA  Q  +    +     K         +              +D + K +  T+    
Sbjct: 614 TRAEKQAFLTYTQSRYRWGKLVDAEPSRFIEEIDDKYLDYMIPQDDYKYKPLINTDIFGD 673

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
           +   +    T     TP   + T +QL   +K+      P K  
Sbjct: 674 EVDKSKLRQTKPKAGTPPAHKPTEEQLRKLRKLRPAASEPEKAS 717


>gi|261868383|ref|YP_003256305.1| DNA-dependent helicase II [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413715|gb|ACX83086.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 724

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 185/551 (33%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++A  +  ++DF ++++ + +L   + +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 176 IYQIYQDACDRAGLVDFAEILLRSYELFLHKPL---ILQRYQQRFQHILVDEFQDTNKIQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E IR L                +  VGD+ QSIY + GA+ + +    +          
Sbjct: 233 YEWIRLLAG----------KTGKVMIVGDDDQSIYGWRGAKIENIQLFLKDFAN------ 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL   +++     N  G +  S                     
Sbjct: 277 --AQTIRLEQNYRSTMNILQAANELIVNNSNRLGKNLWS--------------------- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +     + F+ L +       A  +A  I   +              +
Sbjct: 314 -------EGNQGEPVGIYAAFNELDE-------ALFVASQIKTWVEDGG----------K 349

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + +I           +I           +   IKD +A  R I +++
Sbjct: 350 LNDCAILYRSNSQSRVIEEAL----IRSQIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++         K A    +     +
Sbjct: 406 DDAAFERVINTPPRGIGDRTLDTLRNLTREHQITLWQATNLALQENKLAGRAATALLRFM 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L    +          ++      Q +    G +    I+ L+E ++      + 
Sbjct: 466 ELINSLQRDTEEMPLFAQTDFVIKHSGLYQMYKQEKGEKGEVRIENLEELVSAAREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + +L + L           +A H   V +MT+H+ KGLE P VF++     +F  
Sbjct: 526 EDAEDMTDLTAFLTHASLEAGEEQAAPHQACVEMMTLHSVKGLEFPRVFMIGVEEGLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEAGRLEEERRLAYVGITRAKQ 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTISYAESRR 622


>gi|153206879|ref|ZP_01945697.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177']
 gi|165918247|ref|ZP_02218333.1| DNA helicase II [Coxiella burnetii RSA 334]
 gi|120576952|gb|EAX33576.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177']
 gi|165918107|gb|EDR36711.1| DNA helicase II [Coxiella burnetii RSA 334]
          Length = 720

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/579 (18%), Positives = 188/579 (32%), Gaps = 115/579 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE+  +++ ++DF          L+    SA +R    Q   HIL+DE QDT+ IQ
Sbjct: 174 VYKAYEDVCRQSGLVDFA---ELLLRTLELLRDSATLREHYQQRFQHILVDEFQDTNTIQ 230

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +++L  +  V            AVGD+ QSIYS+ GA+ + +    R          
Sbjct: 231 YAWLKALAGEQTV----------FMAVGDDDQSIYSWRGAKIENIHHFSRDF-------- 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL   + V    +N  G                       LW 
Sbjct: 273 AGVKTIRLEQNYRSTQTILDAANAVIDNNKNRFGKK---------------------LW- 310

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +  +  + F+   +       A  +   I   +               
Sbjct: 311 ------TDSRTGEPITLYTAFNERDE-------AFYVISCIDAWVRQGH----------S 347

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D+ +L R    + L          D +I           +   IKD +A  R + ++ 
Sbjct: 348 YNDVAILYRSNAQSRLFEECL----IDRQIPYRIYGGLKFFERAEIKDALAYLRLMANRN 403

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++  P        +  +  T R    ++++  Q            ++  QH I
Sbjct: 404 DDAAFERVVNVPTRGIGNTTLVALRTTARDHAVSLWQATQHLITNQTLNARALNALQHFI 463

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQN 542
           + +  L    +     +    +L        +       G   ++ L+E +N T +    
Sbjct: 464 ELVDRLQDETKNLPLAEQTEKMLMGSGLLALYKKDNSEKGLSRVENLEELINATSQFTPT 523

Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              +L  L + L           ++ H + V +MT+H AKGLE P+V +      +F H+
Sbjct: 524 DDLALSPLDAFLSHVALETGEEQASAHSDCVSLMTLHAAKGLEFPLVIISGLEEDLFPHR 583

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                   +  EE  RL YVGMTRA ++
Sbjct: 584 MSID----------------------------------AANGLEEERRLCYVGMTRAREK 609

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           LI+    +               + +         +   
Sbjct: 610 LILTYTESRRLHGLEKFNQPSRFIQEIPPELIDAVRPTP 648


>gi|116669378|ref|YP_830311.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24]
 gi|116609487|gb|ABK02211.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24]
          Length = 830

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 114/715 (15%), Positives = 215/715 (30%), Gaps = 140/715 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   +         S  +      +      +      L+         +  
Sbjct: 118 AAAEMRERIEALVGGRAKIMWISTFHSSCVRILRQEAANV-----GLKSNFSIYDSADSL 172

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++    +    P+K    + I  K   LK +L           D  +           
Sbjct: 173 RLVTQVSKSLDLDPKK-FAPKAIQHKISALKNEL----------IDADSYSSSANHNDPF 221

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            +    +   Y +  ++   +DF+DLI  T  + +       +     +   H+L+DE Q
Sbjct: 222 ESAVADVFKGYTQRLRQANAMDFDDLIAETVYMFRAFPA---LAESYRRRFRHVLVDEYQ 278

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R +  +             L  VGD  QSIY+F GA+ + ++  ++    
Sbjct: 279 DTNHAQYALVREIVGEG-------PGASELTVVGDSDQSIYAFRGADIRNIVEFEKDYPN 331

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I+L  ++RST +ILT  + V S   N       +     H+       G
Sbjct: 332 --------ARTIKLEQNYRSTQNILTAANSVISRNPNRPEKRLWTAEGEGHKII-----G 378

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                                +    A+ IA  I  +   D      
Sbjct: 379 YV------------------------------GENEHDEAQFIAKEIDRLQDED------ 402

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               ++  D+ +  R    +  I  +         +           +   IKD +A  R
Sbjct: 403 ---NLRPGDVAIFYRTNAQSRSIEDVL----VRVGLPYKVVGGTRFYERKEIKDALAYLR 455

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479
            +++ +DD++   +L  P     +     +        T +    + A+          +
Sbjct: 456 VLVNPDDDVNLRRVLNEPKRGIGDRAEGAVAALAERERTSFMAAARRADQAPGMATRSVN 515

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                +K + +L  +A           +L          S    +    ++ L E +   
Sbjct: 516 AVLGFVKLLDDLAEVASGSGAAAALEAVLEQTGYLAGLRSSTDPQDESRVENLAELVAVV 575

Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSANHN------------EVRIMTVHTAKGL 583
              EQ +   SL   + ++       +   +   +             V +MT+HTAKGL
Sbjct: 576 REYEQENPEGSLGAFLEQVSLVADADQIPDAPGADIDAAVAEAKRLGVVTLMTLHTAKGL 635

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL      +F H+                                          
Sbjct: 636 EFPVVFLTGMEHGLFPHQ----------------------------------RSATDPKE 661

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             E  RL YVG+TRA  +L + +    S   +S        + +        ++ 
Sbjct: 662 LAEERRLAYVGLTRARKRLYVTRSEVRSMWGQSQYNPASQFIEEIPAELVEWRRE 716


>gi|240081594|ref|ZP_04726137.1| UvrD [Neisseria gonorrhoeae FA19]
 gi|240124369|ref|ZP_04737325.1| UvrD [Neisseria gonorrhoeae PID332]
 gi|268597691|ref|ZP_06131858.1| DNA helicase II [Neisseria gonorrhoeae FA19]
 gi|268682996|ref|ZP_06149858.1| DNA helicase II [Neisseria gonorrhoeae PID332]
 gi|268551479|gb|EEZ46498.1| DNA helicase II [Neisseria gonorrhoeae FA19]
 gi|268623280|gb|EEZ55680.1| DNA helicase II [Neisseria gonorrhoeae PID332]
          Length = 735

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRRHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 467 QVGQMHLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|91791848|ref|YP_561499.1| DNA-dependent helicase II [Shewanella denitrificans OS217]
 gi|91713850|gb|ABE53776.1| ATP-dependent DNA helicase UvrD [Shewanella denitrificans OS217]
          Length = 722

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 113/705 (16%), Positives = 226/705 (32%), Gaps = 136/705 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + K              +      + T       +   L Q+ Q    +++ 
Sbjct: 66  AAAEMRERVEKVAGSNMGRMWIGTFHGLAHRLLRTHF-----QDANLPQSFQIIDSDDQL 120

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            LL    L      +K    ++        K++          +R +      F      
Sbjct: 121 RLLKRI-LKSLNLDEKQYPPRQAQGYINGKKDQ---------GLRPKHIDAGGFPIEQNL 170

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L     +   Y+E+  +  ++DF ++++  ++L   +     +     +   HIL+DE Q
Sbjct: 171 LN----IYKVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQ 223

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ IQ+  IR L  +             +  VGD+ QSIY + GA+ + + +  +    
Sbjct: 224 DTNAIQYAWIRVLAGN----------SANVMIVGDDDQSIYGWRGAQVENLHKFLQDFP- 272

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    S I L  ++RS+A+IL   +++ +   +  G                    
Sbjct: 273 -------GSSTIRLEQNYRSSANILNASNELIANNPDRLGKK------------------ 307

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW           + +  S    F+ + +       AR I   I +           
Sbjct: 308 ---LW-------TEDKDGEPISIYCAFNEMDE-------ARYIVSRIQDWQEKGGAL--- 347

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   D  +L R    + ++            ++          +   IKD M   R
Sbjct: 348 -------TDCAILYRSNAQSRVLEEAF----LHKGMAYRIYGGLRFFERQEIKDAMGYMR 396

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGIS 479
            I +  DD +F  ++ +P     +  +  +  T R    T+++   +       A    +
Sbjct: 397 LINNHNDDAAFERIVNTPTRGIGDRTLDIMRTTARQHQLTLWQASLRLLEEKVLAGRAAN 456

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536
             +  +  I +L    +          ++     R  + +  G +     + L+E +   
Sbjct: 457 AVRGFMDLIVDLKVDTEAMQLFTMVDTVVNTSGLRSMYQAEKGEKAQSRIENLNELVTAA 516

Query: 537 LRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              E       + EL + L        +    A  + V++MT+H+AKGLE P+VF+    
Sbjct: 517 RSFEMPEELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVE 576

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F  K                                           +E  RL YVG
Sbjct: 577 EGIFPSKMALDEG----------------------------------DRLDEERRLCYVG 602

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           MTRA ++L I    +     + +  +    + +         +++
Sbjct: 603 MTRAMEKLTISYAESRRIYGREDYASPSRFIGEIPAKYVEEIRLR 647


>gi|261365712|ref|ZP_05978595.1| DNA helicase II [Neisseria mucosa ATCC 25996]
 gi|288565733|gb|EFC87293.1| DNA helicase II [Neisseria mucosa ATCC 25996]
          Length = 735

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEILQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGAHVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +ILT  + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILTAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           A+ I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------AQFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        I  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTIENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++  L +
Sbjct: 467 QVGQMPLPEIIVGILKDSGLTEHYKTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPD 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SE----------------------------------YSLTERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|325135039|gb|EGC57667.1| DNA helicase II [Neisseria meningitidis M13399]
          Length = 735

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/582 (17%), Positives = 192/582 (32%), Gaps = 118/582 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++  ++  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +                +FAVG
Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNAA----------VFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                AR I      +                  +I VL R    + +I           
Sbjct: 333 -----ARFILDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IK  +A  R  ++ +DD + + ++  P        +  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E           A    +K    ++ I  L +        +    IL      + + ++
Sbjct: 434 NEQGITLWQAACNAGAKAAKVVAFVRLIEALRNQVGQMPLSEIIVGILKDSGLTEHYRTQ 493

Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566
            G   + +D LDE +N  +    E +++ +L E         +++ L        +    
Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFETLPENISDDPAFPILAFLSNATLESGENQAG 553

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A    V++MTVH AKGLE   VFL       F  +                         
Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                        ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|308234140|ref|ZP_07664877.1| UvrD/REP helicase [Atopobium vaginae DSM 15829]
 gi|328943635|ref|ZP_08241100.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829]
 gi|327491604|gb|EGF23378.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829]
          Length = 868

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 97/733 (13%), Positives = 209/733 (28%), Gaps = 141/733 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+  + +    VS  +             + ++ + L            
Sbjct: 64  GAGSGKTRVLTYRIAYLIEEQGVSPWSILAITFTNKAAKEMRERIEALLPGRTQGMWVST 123

Query: 66  FSLLSSFFLTQKFTP---QKNII---TQEINKKSPDLKEKLK---------KSQDEFIKI 110
           F  +    L          KN     T +  +    +   L            ++   + 
Sbjct: 124 FHAMCVRILRTHAERLGYSKNFTIYDTDDTKRLIKHIMGDLNLDPKKYAPNAIRERISQA 183

Query: 111 RDRFNTYKMFKSTL---ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++   T +  + T    A L     +   +E+  +    +DF+DL++ T +L  K     
Sbjct: 184 KNAAQTPQDMEETAGGSALLETTAEVYRIFEQRLRTANAMDFDDLLVKTYELFSKNPD-- 241

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +         +I +DE QDT+ +Q+ +   L   +          + L  VGD+ QSIY
Sbjct: 242 -VLEYYQNIFKYISVDEYQDTNAVQYALTNLLARKY----------QNLMVVGDDDQSIY 290

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           S+ GA+   +L  ++   +          +++L  ++RST  IL   + V       +  
Sbjct: 291 SWRGADITNILSFRKDYPQ--------AHVVKLEQNYRSTGHILHAANAVVKHNSRREAK 342

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              +         + G    V++++    + +                           R
Sbjct: 343 ELFT---------KAGDGQKVEVFQASDERDEG--------------------------R 367

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I  +  +               DI V  R    + ++  +         +     
Sbjct: 368 WIGAEIEKLHDSG----------CAYSDIAVFYRMNAQSRILEDMF----LRAGVPYKIV 413

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                 D   I+D++A  + +++  DD+S + ++ +P        I KI         + 
Sbjct: 414 GGTRFFDRAEIRDVLAYLKVVVNPFDDVSVLRIINTPRRGIGTTSIDKIQSYANDRNISF 473

Query: 467 YEYIQKFANCGISKFQHVIKYIHEL-----IHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           +E +    +        +   + E                   + IL          S  
Sbjct: 474 FEAVCACCDEKDLLNARLRTKLSEFVSCIQKAQTMHGDLSKVVSAILDETHLVDALKSEG 533

Query: 522 GNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
             E     + + EFL+     E +  +  + L+S  +     +  +   +   V  +   
Sbjct: 534 SVEAESRIENIQEFLSVAAEFEASHDNMEETLMSLQDLAEAGLIDSQQLDELGVPTLDSQ 593

Query: 579 TAKGLES---------------------PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
            +  + +                       V +  +            +           
Sbjct: 594 ASSAVNARPSAQVKDIIAVNQQGNSQTLDTVQVAASEHTADQGAVDANLAAFIEWLALRS 653

Query: 618 IPIWIPQSK-----------------------SRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
               +                             + I   +     +S  EE  RL YV 
Sbjct: 654 DLDTLSGQTSAITMMTVHAAKGLEFPVVFVAGMEDGIFPHVAFDRSESLIEEERRLAYVA 713

Query: 655 MTRASDQLIICKH 667
           +TRA  +L +   
Sbjct: 714 ITRARKRLFLSYA 726


>gi|88811691|ref|ZP_01126945.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus
            mobilis Nb-231]
 gi|88791082|gb|EAR22195.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus
            mobilis Nb-231]
          Length = 1117

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 153/936 (16%), Positives = 294/936 (31%), Gaps = 98/936 (10%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSF-----FLTQKFTPQKNIITQEINKKSPD--- 95
              +    Q  ++A Q          L+         TQK T +K     +    +     
Sbjct: 239  AELRALVQVYRRALQHGASPRALMALAFVPPRCSAHTQKLTFRKWGRQGKWQSAATASGL 298

Query: 96   -------LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
                   L  + +                    +        + L   Y++ K+   +LD
Sbjct: 299  SKAAGTALSREGEALYQVVGAACTALQGAVAIGAFEQLAESLRPLLERYQDYKRAAALLD 358

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F+DL+     LL+    +  +R  +     +IL+DE QDT  +Q E++  L  +      
Sbjct: 359  FDDLLATACALLRDP-ANEPVRRALSARYRYILVDEFQDTDPLQVEILWRLCGEGTHDTP 417

Query: 209  THS---SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                      LF VGD KQ+IY F GA+    +  +   +           I+E+  +FR
Sbjct: 418  WQERVLRSGALFCVGDPKQAIYRFRGADVATYVAARERLKAADPEC-----ILEVTANFR 472

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            S   IL  V++ F+ P  A G           R+        V+L   V           
Sbjct: 473  SYRPILEWVNERFAAPLTAVGQPGF-QPLAPTRTPPDDAPRVVRLTVPVA---------- 521

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                 +  D           A+R+A     +IG   I +  + R  +  DI++L     +
Sbjct: 522  -----AADDKPRPSECREAEAQRVAELCQRLIGGYPIHTGRRPRPCRPGDIVLLAPSGTE 576

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                         D  ++V             I+DL+A+ R +    D ++   +L+ PL
Sbjct: 577  LWRYERALE----DRGVAVASQAGKGFFRRQEIQDLIAITRVLADARDTVALGALLRGPL 632

Query: 446  FNFSEDDIFKICTQRHETETVYEY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
               +E+ +  I  Q    E            + A    +  +  ++ +  L   A   +P
Sbjct: 633  VGLTEEALLDIVDQLPPPEDCAGSARLTLWTEPAYVADTLARTTLEILQALAARALDTTP 692

Query: 501  HDFFTLILGAKKGRQQFISRFG---NEVIDVLDEFLNFTLRNEQNSYSSL-QELISELEQ 556
                   +     R   I R        +  ++ FL  +         +   ++ +  E 
Sbjct: 693  FALLGQAVAELHVRPLLIHRHSGGAERALANVELFLEMSKPYAARGLFAFAADMRTRWED 752

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               + +    A  + V ++T+H+AKGLE P+V  V+T S+  +            L D  
Sbjct: 753  AEASTEGRPDAQEHAVHLITMHSAKGLEWPIVIPVNTVSEGRAAGGP--------LFDRS 804

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
               I       R       +   K   + E  RLLYV  TRA   L++ +     +    
Sbjct: 805  DQRIHYCLGAFRAERYVTALDEEKAEQRREQVRLLYVAFTRAEQLLVLPQPLEAESGWFG 864

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                  D +             +   +   +      +           R          
Sbjct: 865  LLDLRLDQLPTLDDGGWGSSLPERIPAQIINGQDRVRFQHEAQRIQAARRA--------- 915

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
                     P +++                +   +++        RG ++HKL++ + T 
Sbjct: 916  ----LVWRRPSEHEPAGAAPSMAEESSVFAEPAADAMSPAEGGALRGTVLHKLMEEVLTE 971

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYK---------NLLLSITRLLENPMMTTAMSCDSYS 847
               +    + +   +          +          L   + R L  P++         +
Sbjct: 972  EVDEAAQVLQTRAAELLAQLAPAPVEAPPISDSPAELAEVVRRTLALPVVVAL-RTRLLA 1030

Query: 848  EVSV---SGKINCPKKDIIISGRIDQISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIA 902
            EV +         P+ + +ISG  D +++        + ++K+        E +   +  
Sbjct: 1031 EVPIYDCYKVAEAPRAETLISGVADALALGVDGTVEAVIDWKSDIAPS---ERVRRLYRE 1087

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
            Q+  Y    +          L++Y+S  +V  I   
Sbjct: 1088 QVRAYLVATQAK------RGLVVYMSLAEVDEITAA 1117


>gi|293392075|ref|ZP_06636409.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952609|gb|EFE02728.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 724

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/551 (18%), Positives = 187/551 (33%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++A  +  ++DF ++++ + +L   + +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 176 IYQIYQDACDRAGLVDFAEILLRSYELFLHKPL---ILQRYQQRFQHILVDEFQDTNKIQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E IR L                +  VGD+ QSIY + GA+ + +    +          
Sbjct: 233 YEWIRLLAG----------KTGDVMIVGDDDQSIYGWRGAKIENIQLFLKDFAN------ 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL   +++ +   N  G +  S                     
Sbjct: 277 --AQTIRLEQNYRSTMNILQAANELIANNSNRLGKNLWS--------------------- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +     + F+ L +       A  +A  I   I              +
Sbjct: 314 -------EGNQGEPVGIYAAFNELDE-------ALFVASQIKTWIEDGG----------K 349

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + +I           +I           +   IKD +A  R I +++
Sbjct: 350 LNDCAILYRSNSQSRVIEEAL----IRSQIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ I       K A    +     +
Sbjct: 406 DDAAFERVINTPPRGIGDRTLDTLRNLTREHQITLWQAINLALQENKLARRAATALLRFM 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L    +          ++      Q +    G +    I+ L+E ++      + 
Sbjct: 466 ELINSLQRDTEEMPLFAQTDFVIKHSGLYQMYKQEKGEKGEVRIENLEELVSAAREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + +L + L           +A H   V +MT+H+ KGLE P VF++     +F  
Sbjct: 526 EDAEDMTDLTAFLTHASLEAGEEQAAPHQACVEMMTLHSVKGLEFPRVFMIGVEEGLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEAGRLEEERRLAYVGITRAKQ 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTISYAESRR 622


>gi|15676157|ref|NP_273289.1| DNA helicase II [Neisseria meningitidis MC58]
 gi|7225454|gb|AAF40687.1| DNA helicase II [Neisseria meningitidis MC58]
          Length = 735

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 102/582 (17%), Positives = 193/582 (33%), Gaps = 118/582 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++  ++  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +  +             +FAVG
Sbjct: 204 QNNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLIAGN----------HAAVFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGASVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                AR I      +                  +I VL R    + +I           
Sbjct: 333 -----ARFILDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IK  +A  R  ++ +DD + + ++  P        +  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E           A    +K    ++ I  L +     S  +    IL      + + ++
Sbjct: 434 NEQGITLWQAACNAGAKAAKVVAFVRLIEALRNQVGQLSLSEIIVGILKDSGLTEHYRTQ 493

Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566
            G   + +D LDE +N  +    E +++  L E         +++ L        +    
Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFEILPENISDDPAFPILAFLSNAALESGENQAG 553

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A    V++MTVH AKGLE   VFL       F  +                         
Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                        ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|251792813|ref|YP_003007539.1| DNA-dependent helicase II [Aggregatibacter aphrophilus NJ8700]
 gi|247534206|gb|ACS97452.1| DNA helicase II [Aggregatibacter aphrophilus NJ8700]
          Length = 724

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 103/552 (18%), Positives = 186/552 (33%), Gaps = 116/552 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  ++DF ++++ + +L   + +   I  +  Q   HIL+DE QDT+ I
Sbjct: 175 RIYQIYQDACDRAGLVDFAEILLRSYELFLHKPL---ILQRYQQRFQHILVDEFQDTNKI 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E IR L                +  VGD+ QSIY + GA+ + +    +         
Sbjct: 232 QYEWIRLLAG----------KTGKVMIVGDDDQSIYGWRGAKIENIQLFLKEFDN----- 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   +++ S   N  G +  S                    
Sbjct: 277 ---AHTIRLEQNYRSTMNILQAANELISNNNNRLGKNLWS-------------------- 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              + F+ L +       A  +A  I   I              
Sbjct: 314 --------EGNQGDPVGIYAAFNELDE-------ALFVASQIKTWIEDGG---------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D  +L R    + +I           +I           +   IKD +A  R I ++
Sbjct: 349 KLNDCAILYRSNSQSRVIEEAL----IRSQIPYRIYGGMRFFERQEIKDALAYLRLIANR 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQHV 484
           +DD +F  ++ +P     E  +  +    R    T+++         K A    +     
Sbjct: 405 QDDAAFERVINTPPRGIGERTLDTLRNLTREHQITLWQATNLALQENKLAGRAATALLRF 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ I+ L    +          ++      + +    G +    I+ L+E ++      +
Sbjct: 465 MELINSLQRDTEEMPLFAQTDFVIKHSGLYEMYKQEKGEKGEVRIENLEELVSAAREFIK 524

Query: 542 -NSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 + EL + L           +A H   V +MT+H+AKGLE P VF++     +F 
Sbjct: 525 PEEAEDMTELTAFLTHASLEAGEEQAAPHQACVEMMTLHSAKGLEFPRVFMIGVEEGLFP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                   +    EE  RL YVG+TRA 
Sbjct: 585 S----------------------------------FRSFEEAGRLEEERRLAYVGITRAK 610

Query: 660 DQLIICKHSNTS 671
            +L I    +  
Sbjct: 611 QKLTISYAESRR 622


>gi|256369829|ref|YP_003107340.1| DNA helicase II [Brucella microti CCM 4915]
 gi|255999992|gb|ACU48391.1| DNA helicase II [Brucella microti CCM 4915]
          Length = 858

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 196/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL    ++ +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAARLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|161870830|ref|YP_001600003.1| DNA helicase II [Neisseria meningitidis 053442]
 gi|161596383|gb|ABX74043.1| DNA helicase II [Neisseria meningitidis 053442]
          Length = 694

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 136 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 192

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 193 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 238

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 239 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 270

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 271 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 310

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 311 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 365

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 366 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKIAAFVRLIEALRN 425

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++ +L E
Sbjct: 426 QVGQLPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFETLPE 485

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 486 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 545

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 546 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 571

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 572 KRLYITMAQ 580


>gi|222053487|ref|YP_002535849.1| UvrD/REP helicase [Geobacter sp. FRC-32]
 gi|221562776|gb|ACM18748.1| UvrD/REP helicase [Geobacter sp. FRC-32]
          Length = 746

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 103/717 (14%), Positives = 218/717 (30%), Gaps = 129/717 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  ++++  + +    V                 +  + + L        +   
Sbjct: 27  GAGSGKTRVIVHRIAYLITERGVPPWQILAVTFTNKAAAEMRGRVEKLLP-GGETPLIST 85

Query: 66  FSLLSSFFLTQK------FTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F    +  L ++       +       ++  K   ++  +L         K       + 
Sbjct: 86  FHSACARILRREIHHLGYDSSFAIYDDKDGEKLIKEIVAELHLDEKRFPAKLFTAAIDEC 145

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           ++   T                + A Y++  ++   LDF DL++ T  L ++      + 
Sbjct: 146 KNAGRTPDDLPMGDYMADKIGQVYAAYQKRLQQCNALDFGDLVLLTVRLFEEFPE---VL 202

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            +       I +DE QDT+ IQ+ +++ L  +           + L  VGD+ QSIY + 
Sbjct: 203 ARYQDRYRWIQVDEYQDTNPIQYRLVKLLAGN----------RQNLCVVGDDDQSIYRWR 252

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+ + +L  +    +          +++L  ++RST+ IL+    V +     +  +  
Sbjct: 253 GADIRNILDFEDDFPR--------VKVVKLEQNYRSTSTILSAAGAVVAKNRGRKAKT-- 302

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW             +   +    D   +       AR + 
Sbjct: 303 -------------------LW-------TENPPGEPVVYRRLMDEREE-------ARFVC 329

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I   +      +           + V  R    + ++            I        
Sbjct: 330 RQIEQYVRKGGDLAG----------VAVFYRANAQSRVVEDAMVAD----GIPYHMIGGM 375

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY 469
                  IKD++A  R +++  D++S   ++ +P        + KI    R +   +YE 
Sbjct: 376 RFYARQEIKDILAYLRVLVNPADEVSLKRIVNTPARGIGHATMEKITELARRKGILLYEA 435

Query: 470 IQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           + +       A     K    ++ + +   +       +  + I+       +      +
Sbjct: 436 LSEAAEGGLLAAGPRGKIAGFVELLEQFRQLMDAVPLTELTSRIIQETGYAMKLKEERTD 495

Query: 524 EVIDVL-DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAK 581
           E  D L +     +   E    +  + L + LEQ                  +MT+H+AK
Sbjct: 496 EAQDRLANLEELLSALEEFERRTEERTLAAFLEQVALISDLEQEGKGSESATLMTLHSAK 555

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE P+VF++    ++F H    +                                    
Sbjct: 556 GLEFPLVFMIGMEEKLFPHSRSLEEPEQMEEE---------------------------- 587

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                  RL YVGMTRA ++L +          +         + D       V+  
Sbjct: 588 ------RRLCYVGMTRARERLFLTNARRRRIFGQEQYNPPSRFLADIPRELLDVEDE 638


>gi|94311565|ref|YP_584775.1| ATP-dependent DNA helicase UvrD [Cupriavidus metallidurans CH34]
 gi|93355417|gb|ABF09506.1| DNA-dependent ATPase I and helicase II [Cupriavidus metallidurans
           CH34]
          Length = 787

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 106/652 (16%), Positives = 206/652 (31%), Gaps = 145/652 (22%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F++L S     + +  K ++ + +N          K  Q      ++
Sbjct: 96  LRAHFRDAGLPQTFAILDS---QDQLSAIKRLL-KGLNVDDEKYPP--KNLQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +       ++          L A Y+E  ++  V+DF +L++   +LL+  D    IR  
Sbjct: 150 QGLRPADVEANDDFNRRFVDLYAAYDEQCQREGVVDFAELLLRCYELLRYNDA---IRQH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 H+L+DE QDT+++Q++ ++ L            +   +FAVGD+ QSIY+F GA
Sbjct: 207 YQHRFRHVLVDEFQDTNVLQYQWLKLLAG------YGSGNAAAVFAVGDDDQSIYAFRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   ++  + R         +I+L  ++RS   IL   + + S      G +  + 
Sbjct: 261 NVGNMRDFEQEFRVR--------HLIKLEQNYRSHGHILDSANHLISHNARRLGKNLRTD 312

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V++++      +                          A  I   
Sbjct: 313 ---------AGHGEPVRVFQAGSDGQE--------------------------ASWIVEE 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I + I             +   +I +L R    + +I            I          
Sbjct: 338 IRDQIAQG----------MSRSEIAILYRSNAQSRVIEHAL----FSSGIPYRVYGGLRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471
            +   +K  +A  + I +  +D +F  ++  P        +  +    R    ++ E + 
Sbjct: 384 FERAEVKHALAYLQLIENPRNDAAFGRVVNFPTRGIGAKSLEVLQDAARQYNCSLAEAVA 443

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLD 530
                  S     I+ I ++       +       +         + +   G + I+ L 
Sbjct: 444 YVPGKAGSSLGAFIRLIEQMRAETSRMTLAQTVEYVTNTSGLMTHYQTEKEGQDRIENLQ 503

Query: 531 EFLNFTLRNEQNSYSSLQELIS------------------------------------EL 554
           E +             L+ L                                       L
Sbjct: 504 ELVTAAQAFVVEEGYGLEALGRMLPANRDAMPALAQGEQDQQVLDPEQLPVVMTPLVAFL 563

Query: 555 EQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                        A  + V++MTVH AKGLE  VVF+      +F H++           
Sbjct: 564 THASLEAGDNQAQAGQDAVQMMTVHAAKGLEFNVVFITGLEEGLFPHENS---------- 613

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                    ++    EE  RL+YV +TRA  +L + 
Sbjct: 614 ------------------------AMEADGLEEERRLMYVAITRARARLYLS 641


>gi|261400846|ref|ZP_05986971.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970]
 gi|269209307|gb|EEZ75762.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970]
          Length = 733

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  K    +DF+DLI 
Sbjct: 126 KEAIFKAQHQISLWKNDLKTPEDVLQTASNIWEQQTARVYASYQETLKSYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +++L  ++RSTA IL + 
Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVVKLEQNYRSTARILKIA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 285 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 312

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 313 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 360

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 361 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 416

Query: 453 IFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 417 LGKLNTYAHEHECSLYEAAQNEEALAALNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 476

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + E +++  R       ++ EL   +       
Sbjct: 477 SLLEEIGYENHLMQNEEGKAGEIKWRNVGELVSWFARKGGEDGKNIIELAQTVALMTLLE 536

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 537 GKD-EEEADAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 575

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  +L +        +        
Sbjct: 576 ---------------DSIEEGNVEEERRLMYVGITRAKRRLTLTHCVKRKKQGIWQFPEP 620

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 621 SRFIGEMPQED 631


>gi|34495660|ref|NP_899875.1| DNA helicase II [Chromobacterium violaceum ATCC 12472]
 gi|34101515|gb|AAQ57884.1| DNA helicase II [Chromobacterium violaceum ATCC 12472]
          Length = 713

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/544 (18%), Positives = 187/544 (34%), Gaps = 111/544 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+   ++  V+DF +L++ + +LL + +    +R       +HIL+DE QDT+ +
Sbjct: 170 ELYAAYDAQCRREGVVDFAELLLRSYELLSRNEA---LRAHYSSRFSHILVDEFQDTNRL 226

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  +             LFAVGD+ QSIY+F GAE   +              
Sbjct: 227 QYAWLKLLAGE----------HGALFAVGDDDQSIYAFRGAEVGNMRALLSDFH------ 270

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + L  ++RS  +IL   + +    +   G +                     LW
Sbjct: 271 --VAEPVRLEQNYRSMGNILNAANALIEQNDGRLGKN---------------------LW 307

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  D+    +   + +  D           A  I     ++              +
Sbjct: 308 ------TDAGEGDKIRFFQAGSDGEE--------AEFIVDEAKSLHRDG----------L 343

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              DI VL R    + L+  +      + +I           +   IK  +A  R + + 
Sbjct: 344 ALSDIAVLYRSNAQSRLLEHVL----VNAQIPYRIYGGLRFFERQEIKHALAYLRLVANP 399

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYE-YIQKFANCGISKFQHVIKYIH 489
           +DD + + ++  P        +  +    R +  T+++   Q       +K    +  I 
Sbjct: 400 DDDNALLRVINVPARGIGARSVENLQAASREQGVTLWQAACQSGGGRTAAKIGEFVLLIE 459

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +L    +  +  +  +L++     R  +      G E +  LDE +N       +     
Sbjct: 460 KLREQCRDFNLAETISLVIDRSGLRDMYEQDKKDGEERLANLDELVNAAASFLPDQPE-- 517

Query: 548 QELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           Q L   L        +    A  + +++MTVH AKGLE   VF+      +F H++    
Sbjct: 518 QALTEFLAAASLEAGEHQADAGSDALQLMTVHAAKGLEFDAVFVSGLEEGLFPHENSV-- 575

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                           +     +E  RL+YV +TRA  +L +  
Sbjct: 576 --------------------------------MDGKGLQEERRLMYVAITRARKRLYLSS 603

Query: 667 HSNT 670
             + 
Sbjct: 604 AQSR 607


>gi|269101917|ref|ZP_06154614.1| exodeoxyribonuclease V beta chain [Photobacterium damselae subsp.
            damselae CIP 102761]
 gi|268161815|gb|EEZ40311.1| exodeoxyribonuclease V beta chain [Photobacterium damselae subsp.
            damselae CIP 102761]
          Length = 1221

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 127/878 (14%), Positives = 263/878 (29%), Gaps = 130/878 (14%)

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK--KRDVSAWIRYKIDQEINHILID 183
                         EAK +   L F+DL+      L+      ++ +  +I       +ID
Sbjct: 334  LADAITSCRELLAEAKLRKGWLSFDDLLTQLAAALQANDNASASKLAQRIRTLYPVAMID 393

Query: 184  EVQDTSLIQWEVIRSLTEDFF----------VGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            E QDT  +Q+ +  ++                  +    P  LF +GD KQ+IY+F GA+
Sbjct: 394  EFQDTDPLQYYIFNTVYGHSSLVEDENFSEGSDSDAARGPSGLFMIGDPKQAIYAFRGAD 453

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                ++ +R      T          L  ++RS+AD++  V+ +F+ P+       D   
Sbjct: 454  IFTYIQARRQVSAHYT----------LATNWRSSADMIAAVNTIFATPDRPFIYDSDIPF 503

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                 ++        +    +                +    + +      +A   A  I
Sbjct: 504  -----AAVNHSPKATERGWILDGVDQKALTFWLAQEEAPIAPISKGDYNKQMAEATASEI 558

Query: 354  SNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
              ++           +  ++  IQA DI VLVR   +  +I    + L      SV  ++
Sbjct: 559  QRILTLAQQDKAHFVNGSEQNKIQAGDIAVLVRTGSEGAMIR---QALAQQGIASVYLSN 615

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            R  +   +   D+  L + +L  E++ +    L S  F  +  ++ ++  +  E E    
Sbjct: 616  RDSVFSSIEAADIERLLQAVLLPENERTLRAALASSFFALTATELDRLNQEEDEWERWVG 675

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
              + +     ++          L  +    + H     +L    G +             
Sbjct: 676  AFRDYRTLWQNR--------GVLPMLRHVIAKHQIAERLLTHNGGERSLTDIL------H 721

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYP---PTIKRAHSANHNEVRIMTVHTAKGLES 585
            + E L    +   + Y  ++ L   +E         +    ++ N V+I+T+H +KGLE 
Sbjct: 722  IGELLQQASQTLDSDYGLIRWLAERIESPNGNLDEEQLRLESDRNLVQIVTIHKSKGLEY 781

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             +VFL                 +         I                 +   ++    
Sbjct: 782  DLVFLPFVC-----GYRAVDRALYHDEETQQAIFDVKGG--------EASMALAEQERLA 828

Query: 646  EYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            E  RL+YV +TRA     I          +K      +  +     N +      LT ++
Sbjct: 829  EDLRLIYVALTRAVYGCYIGMAPVRNGMSRKEPTGLHHCAIGWLVQNGKEGGVADLTAAL 888

Query: 705  NKDEWIAYEWSTHHP---------ENTPLEREETIKQLMDEQKIPKKLFS---------- 745
            N  +  A   +   P          +  + +E    +   + +    + S          
Sbjct: 889  NLLQTNAQVMTIAEPPKCSSELWQADEEIPQELVASRFQRDIERNWWITSYSGLVKQGNK 948

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                    P     S+ D      +        +  +    G  +H + + I        
Sbjct: 949  HHDASFEAPGFDVDSSQDKADDEPVLVPERSIYTFPKGARPGTFLHTIFEEIEFTTSADS 1008

Query: 802  KNFIT-SYCTKNAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVSVSGK 854
                         +    +    L   I  +++ P       +    +    +E+     
Sbjct: 1009 DETRQILLELLRLENLEPEWLPILQQLIVDVMQCPLDGQALRLGQIGANRRLAEMEFMLP 1068

Query: 855  INCPKKDII-------------------------ISGRIDQISISQQNIFIFEYKTHHHV 889
            I      ++                         + G ID +   Q   ++ ++K+++  
Sbjct: 1069 IELLSSRLVNKTLARHDELSAKAGELGFATVSGMLKGFIDLVFEYQGKYYVLDWKSNYLG 1128

Query: 890  PQEI----EHIPY-----THIAQLSIYEKILKDSYPNK 918
                    E +        +  Q  IY   L     N+
Sbjct: 1129 DDPELYRGEMLKEAMRDHRYDFQYQIYALALHRFLKNR 1166


>gi|237749150|ref|ZP_04579630.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter formigenes
           OXCC13]
 gi|229380512|gb|EEO30603.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter formigenes
           OXCC13]
          Length = 757

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/577 (16%), Positives = 190/577 (32%), Gaps = 142/577 (24%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L + YE+  ++  V+DF +L++ + +LL++      +R        HIL+DE QDT+ +
Sbjct: 169 ELYSLYEDQCQREGVVDFAELLLRSYELLERN---QTLREHYQDRFRHILVDEFQDTNNL 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q++ ++ L  +             +FAVGD+ QSIY+F GA    +L  ++    +    
Sbjct: 226 QYKWLKLLAGNDSS----------IFAVGDDDQSIYAFRGANVGNMLSFQQDFNVQ---- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               ++I L  ++RS  +IL   + + +   N  G +                       
Sbjct: 272 ----NLIRLEQNYRSHGNILEAANTLIAHNRNRLGKNLH--------------------- 306

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +          + +  S     + I   ++++I             +
Sbjct: 307 -------TDAGEGEPI-------RICEAPSDLNEVQWILEEVNHLIREG----------M 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + K I VL R    + +I            I           +   IK  +A  + I + 
Sbjct: 343 ERKQIAVLYRSNAQSRVIEHGL----FSAGIPYRVYGGLRFFERAEIKHAIAYLQLIDNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            ++ +F+ ++  P        I  +    R    +++E I   +  G +     I+ I  
Sbjct: 399 ANNAAFLRVVNFPARGIGARTIENLQEMARMHDISLFEAIPYVSGKGGTALGSFIRLIQS 458

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           +    Q  +       +L        + +   G + ++ L++ ++  +        S + 
Sbjct: 459 IRAEVQPMNLPTLIQTVLEKSGLMMHYQTEKEGADRLENLEQLVSAAMLFLSEEGFSQEA 518

Query: 550 -----------------------------------LISELEQYPPTI-KRAHSANHNEVR 573
                                              L + L        +       + ++
Sbjct: 519 PALMTEAVTPAGEKSMLTVDEVMDADVPLSMIMSPLSAFLTHASLEAGENQAQEGQDALQ 578

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MTVH+AKGLE   VF+      +F H++                               
Sbjct: 579 LMTVHSAKGLEFDAVFITGLEEGLFPHENS------------------------------ 608

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                 +    EE  RL+YV +TRA  +L +      
Sbjct: 609 ----AREDGGLEEERRLMYVAITRARKRLYLSYAQTR 641


>gi|319793174|ref|YP_004154814.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315595637|gb|ADU36703.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 1086

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 143/925 (15%), Positives = 312/925 (33%), Gaps = 92/925 (9%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQK 77
                    +   +++  +L  ET N T  K A+ +           E  S   +      
Sbjct: 245  QALRGDSVRRRWLDRAAALGRET-NKTPQKAAEAIIDVFGVGEPAVESLSAALAHLRKNF 303

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
            F   ++ +T+ + K      ++ +         + +   +   +       L   L A +
Sbjct: 304  FVASEDRLTKNLQKF--PAAQEAEAELQVLCAAQAQHAAWLYQQRMTRLTRL---LIAAF 358

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             + K+ +  +D  D+      LL +  +S W++ ++D  I H+LIDE QDT+ +QW+   
Sbjct: 359  ADVKRAHGWVDMNDVEQAAQLLLGQSALSGWVQERLDARIAHLLIDEFQDTNPLQWQ--- 415

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            +L           SS   +F VGD KQSIY F  AEP+  +       K+    G    +
Sbjct: 416  ALYGWLSSYTGAGSSAPRVFIVGDPKQSIYRFRRAEPQVFIAA-----KKFVREGLDGEL 470

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            +    + R+   ++ +V++     ++A            H + R  +   ++L       
Sbjct: 471  LNCDHTHRNARAVVGLVNQAMLAAQDAGEF----DGYRAHTTERGDEGELLKLPAIDRDA 526

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                                  +   +   ++              +      I  + I+
Sbjct: 527  LGDAAEAAPADDGMLHWRDSLVTPRVLPEEQLLQ--KECEQAARWVAQRIADGIPPRQIM 584

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VL R+R     +    R       I V   ++  L D   ++D++AL   ++S   DLS 
Sbjct: 585  VLARRRNRLSAMQDALR----QRHIPVQQPEKNELHDAPEVQDMVALIDALVSPTHDLSL 640

Query: 438  VCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
               LKSPLFN  ++ + ++   QR  + + +  + +               + +      
Sbjct: 641  ARALKSPLFNIDDEVLVQLALRQRAHSSSSWFALIQKGEGLPPVLVETGVSLKKWQRWLV 700

Query: 497  FCSPHDFFTLILGAKKGRQQF----ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
               PHD    I        +F     +      +  L   ++ +L  E   +++   L+ 
Sbjct: 701  TLPPHDAIDAIFHDGDVLAKFGAAVPAAMRQSALANLRGLMSASLEIEGARFATPYALVR 760

Query: 553  ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
             L      ++    A  + V+++TVH AKGLE+  V ++D  +     + +  +      
Sbjct: 761  ALRAGG--VRAPSVAAPDAVQLLTVHGAKGLEADTVLMLDCDAAPPRAQTMGVLVEWKGS 818

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
            +  P   +++   K+     + L++  +++   E    LYV  TRA ++L++        
Sbjct: 819  DSAPTRFVFLASEKTPPACAASLLEEEQRARHREELNGLYVATTRARERLVLSSVKPA-- 876

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
              ++N+ +W+  +  +                                  P E +E + +
Sbjct: 877  --RANEGSWWARLESACE--------------------------------PTEADEPLVE 902

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
            L  E  +       +              +D            D +    G  +H+LL+ 
Sbjct: 903  LPVETGVRSFSMKQMPPAAA--------AVDQPSAKKAADATVDARAAAFGQAMHRLLEW 954

Query: 793  IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS 852
                   +              +   ++ +       R +                    
Sbjct: 955  AV---PGETLPSAHVRAAAREFMLDPQQARGAATLAER-IRAGAGAWVWDDRRVDWHGNE 1010

Query: 853  GKINCPKKDIIISGRIDQISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              +    + +    RID++   ++    +I +YK+     ++   I      Q+  Y   
Sbjct: 1011 VTLVHEGETL----RIDRLVRERETGAWWILDYKSAARPERDATLIA-----QMQRYRAA 1061

Query: 911  LKDSYPNKSLVCLLIYVSEPKVFII 935
            ++ +YP  ++    +   + ++  +
Sbjct: 1062 VQHAYPGATVRVAFL-TGQGELVNL 1085


>gi|224418472|ref|ZP_03656478.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253827786|ref|ZP_04870671.1| ATP-dependent DNA helicase PcrA [Helicobacter canadensis MIT
           98-5491]
 gi|313142003|ref|ZP_07804196.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
 gi|253511192|gb|EES89851.1| ATP-dependent DNA helicase PcrA [Helicobacter canadensis MIT
           98-5491]
 gi|313131034|gb|EFR48651.1| ATP-dependent DNA helicase [Helicobacter canadensis MIT 98-5491]
          Length = 702

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 108/626 (17%), Positives = 210/626 (33%), Gaps = 133/626 (21%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEE 139
            +  T++I K+       L     E  + ++   T +                +  +Y+E
Sbjct: 115 DSDDTKKILKELNCDLAPLPLIISEISRYKNSQITPQEALKNAHNELYKHIAKVYLNYQE 174

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
              +N ++DF+DL++   ++LK       +  +I Q+  +I++DE QDT+ +Q+++++ L
Sbjct: 175 TLLQNNMVDFDDLLLLPIEILKSNP---NVATEISQKYQYIMVDEYQDTNDLQYQLLKYL 231

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                      ++   +  VGD+ QSIYS+ GA  + +L   +          +    I+
Sbjct: 232 C----------TTHNNICVVGDDDQSIYSWRGANIQNILNFSQHF--------KGAKTIK 273

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS+  IL   + + S  +   G +  ST                           
Sbjct: 274 LEENYRSSKSILNAANHLISNNKERLGKTLKSTL-------------------------- 307

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                +       +D   +       A+ ++  I  ++             I  KDI +L
Sbjct: 308 --DEGKPIEVLHSYDEQEE-------AKNLSKIIKKLLQNG----------INPKDIAIL 348

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  +        N  +I  V        +   IKD+++  R + +  DD S + 
Sbjct: 349 FRLNALSRSLEEGF----NRERIPYVLVGTIRFYERSEIKDVISYFRVLTNINDDFSLLR 404

Query: 440 MLKSPLFNFSEDDIFKIC-------------TQRHETETVYEYIQKFANCGISKFQHVIK 486
           ++  P     +  + K+                    + + + I K     I +F   IK
Sbjct: 405 IINKPKRGIGKTTLEKLKSLSQIHHCSIYELFSNQSPQLLQQEISKKTYNTIWEFFKTIK 464

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRN-EQNS 543
            + +L   +      DF   I     G  + +S+   EV     ++EF        +QN 
Sbjct: 465 ELQDLQAQSSLKFLDDFEEKI-----GLCKALSQNSEEVDRVSNIEEFYGLYREYVKQNP 519

Query: 544 YSSLQELISELEQYPPTIKRAHSANH---NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              L++ ++EL                    V  M+VH++KGLE   VF++      F  
Sbjct: 520 LMELEDFLNELALRSDQEDTELRNEQKGVEGVSCMSVHSSKGLEFDYVFIIGLEEGFFPM 579

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  + +  +E  RL YV  TRA  
Sbjct: 580 -------------------------------------AREDTNLQEERRLGYVAFTRAKK 602

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVY 686
           +L +    +               + 
Sbjct: 603 ELYLSYVDSRFYRGNRTSLYPSRFLA 628


>gi|319947691|ref|ZP_08021905.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319438641|gb|EFV93547.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 824

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/751 (13%), Positives = 213/751 (28%), Gaps = 157/751 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +   + P        +  + S+ +                 +     + R  
Sbjct: 78  AAAEMRERVAALVGPHAERMW--VATFHSICVRILRAQSALLGTRNSNFTIYDSDDSRR- 134

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L      ++    K    + +     + K +L+   +            +  + +  + 
Sbjct: 135 -LLGMIAKEQQLEVKKFTPRMLASAISNHKNELRDPAEAMD---------RALEDSDRTA 184

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +     DF+DLI  T  LL+       +     +   H+++DE QD
Sbjct: 185 QTVAAVFTEYQARLQAANAFDFDDLIGETVALLRAHPE---VAAYYRRRFRHVMVDEYQD 241

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+ ++R+L        +     P  L  VGD  QSIY+F GA  + +   +     
Sbjct: 242 TNHAQYVLVRTLVGGAEGDDDEVGVPPAELCVVGDADQSIYAFRGATIRNIEDFEHDYP- 300

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I L  ++RST  IL+  + V +     +  +                  
Sbjct: 301 -------DARSILLEQNYRSTQTILSAANAVIARNAGRREKN------------------ 335

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW        ++   +        +   +       AR IA  I  ++ +       
Sbjct: 336 ---LW-------TAEGAGELLVGYVADNEHDE-------ARFIAGEIDRLVDSGE----- 373

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   D+ V  R    + +I  +   L     +           +   ++D++A  +
Sbjct: 374 ----ASYSDVAVFYRTNNSSRVIEDVFVRL----GLPYKVVGGTRFYERKEVRDVVAYLK 425

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQK--------FANCG 477
            + + +D ++   +L +P     +      +           + ++              
Sbjct: 426 VLNNPDDAVAIRRILNTPRRGIGDRAEACVVVHAEQRGIGFAQALRDASEGKVSLLPTRS 485

Query: 478 ISKFQHVIKYIHELIHIAQFCSPH----------DFFTLILGAKKGRQQFISRFGNE--- 524
           +      ++ + +L                         +L     R +  +    +   
Sbjct: 486 VKAIAGFVEMLDDLRGRLDGDDHAGGHDSAPDVGALVEAVLERTGYRAELEASNDPQDAA 545

Query: 525 VIDVLDEFLNFTLRNEQN---------------------------SYSSLQELISELEQY 557
            +D L+E +                                       SL   +  +   
Sbjct: 546 RLDNLNELVGVGREFSSEAALQRSAREQGFVEEADADADLDEGLAEPGSLAAFLERVSLV 605

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
               +     +  +V +MT+HTAKGLE PVVFL+     +F H                 
Sbjct: 606 ADADEIPDD-DQGQVTLMTLHTAKGLEFPVVFLIGMEDGLFPHMRALGDP---------- 654

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                                   +   E  RL YVG+TRA  +L + +    S+  +  
Sbjct: 655 ------------------------AELSEERRLAYVGITRARRRLYLTRAMMRSSWGQPM 690

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
                  + +        ++ +        +
Sbjct: 691 TNPGSRFLEEIPSEAIEWQREEPAGGTGFGD 721


>gi|42526415|ref|NP_971513.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405]
 gi|41816608|gb|AAS11394.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405]
          Length = 662

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/592 (15%), Positives = 184/592 (31%), Gaps = 120/592 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K L   Y++  K    +DF+DLI+    + K+      +  +  +   +I++DE QDTS 
Sbjct: 161 KALYKEYQDGLKLYNAVDFDDLIMLPIKIFKEHPE---VLAEYRERYRYIMVDEFQDTST 217

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  ++ + +            + +  VGD+ QSIYS+ GA  + +   ++   +    
Sbjct: 218 QQYNFMKLIAD------------KNICVVGDDDQSIYSWRGASFENIRNFEKDFPEMIE- 264

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I+L  ++RST  IL   + V S   N +  +  S                +++
Sbjct: 265 -------IKLEQNYRSTGTILAAANGVISHNVNRKVKALWSE---------KDSGRPIEI 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           +                             + +  A  I+  I ++   +          
Sbjct: 309 FIP--------------------------ENEAAEADFISDMILSLKQRE---------G 333

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +  D  VL+R    +  +         +  I    +          IKDL++  R + +
Sbjct: 334 FKYSDFGVLIRANSLSRPLEESF----LEVNIPYRMSGGTSFFQRKEIKDLISYLRVVAN 389

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK---------F 481
            +DD++ + ++ +P     +  +  +     E         +       +          
Sbjct: 390 PDDDVNLLRIINTPRRGIGKKTLETLSALATENSCSMRTAIRLLLENPPEDMRGKSIEDL 449

Query: 482 QHVIKYIHELI-HIAQFCSPHDFFTLILGAKKGRQQFISRFG------NEVIDVLDEFLN 534
           +   + I      +            +L      +  I+ +          +  ++ FL+
Sbjct: 450 KEFAELISTHRTQLLSGKGLAQKVRKLLDDIAYNEYLIAEYQKSEKAAQFKMMNIESFLH 509

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E N  +    L   L +     +        EV IMT+H++KGLE PVVF+    
Sbjct: 510 SMDDWENNPDNLDGSLYDYLNRITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAE 569

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +  H                                            EE  RL YV 
Sbjct: 570 DGLIPHARSV---------------------------------EENDGDVEEERRLFYVA 596

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +TRA  +L I        +    +      + +   +     +        +
Sbjct: 597 ITRAQQKLFITSCRQRRKQGGITECAPSPFLDEIPADLVEYHEPDAQAEEER 648


>gi|325129035|gb|EGC51885.1| DNA helicase II [Neisseria meningitidis N1568]
          Length = 735

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                S  +    IL      + + ++ G   + +D LDE +N  +    E +++  L E
Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +         V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGVGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|297516694|ref|ZP_06935080.1| DNA-dependent helicase II [Escherichia coli OP50]
          Length = 695

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 146 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 202

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 203 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 247

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 248 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 283

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 284 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 322

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 323 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 375

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 376 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 435

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 436 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 495

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 496 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 555

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 556 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 581

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 582 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 624


>gi|312869874|ref|ZP_07730014.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3]
 gi|311094614|gb|EFQ52918.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3]
          Length = 1386

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 123/757 (16%), Positives = 257/757 (33%), Gaps = 74/757 (9%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT----ILKKAQTLQQASQTQCIEERFS 67
              +     L           ++  +  ++    T     L++    +Q           +
Sbjct: 329  DKDAALAQLDQFSARFQELRDRAAAAQLDDKTLTSLDKDLQQFAQARQLLVPDSWNAVRA 388

Query: 68   LLSSF-FLTQKFTPQKNIITQEI-------NKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
            ++    F T    P+ + +  ++        +        ++ S   + + + +  +++ 
Sbjct: 389  IIRGAKFRTMAGKPKGDPVAADVYATLTASRQALKKQLTGIQDSFFAYDEDQFQEISHQS 448

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY---KIDQE 176
             +       +       Y++ K    VL+F DL      +L         +     + + 
Sbjct: 449  QRLLTKLSQVTVAFRRAYQQVKLSRHVLEFSDLEHYAYQILTPPADQPDWQELVANLQRH 508

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
               I++DE QDT+ +Q  ++  LT         +     +F VGD KQSIY F  A+P  
Sbjct: 509  YQEIMVDEYQDTNRLQEAILTRLT---------NPDQHNMFMVGDVKQSIYRFRQADPSL 559

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTT 294
             L + +  ++     G     I L  +FRS +++    + +F+    A    +  D    
Sbjct: 560  FLHKYQRYRQ----PGAGDEAIVLGENFRSMSNVTDFTNLLFAQLMGADVGEIEYDQAAH 615

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            +++ ++            +++    +      +          ++   +   + +   I 
Sbjct: 616  LKYAATYYETADNQPRPTEILLYDANADQGAIKESPDQH----EDDKLAGELKMVGMRIK 671

Query: 355  NMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             M+  +    +    + R I   DI++L R +     I        +  +I +  +D   
Sbjct: 672  QMVANEEQIFDPATQQLRPINYGDIVLLERTKS----INNTLMEEFSKLEIPLTVHDVES 727

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
                  ++ +MAL R I +   D+  V +L+SPL   S  ++  I  Q            
Sbjct: 728  YFQATEVRVMMALLRLIDNPHQDIPLVAVLRSPLVGLSTKELAFIRLQNRSANYYGALQT 787

Query: 472  KFANCGI---------------------------SKFQHVIKYIHELIHIAQFCSPHDFF 504
              +N                               K  H +  +      AQ  S  D  
Sbjct: 788  FKSNYANADRHLIKPELLNATATADQPDPVAVLYDKVSHFLDQLATFRQTAQQQSLVDLI 847

Query: 505  TLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I               G +    L  F       EQ+S+  L + I  +E+     K 
Sbjct: 848  WQIYNETGYLDYVGAMPGGAQRQANLHAFYQRAHDYEQSSFKGLYQFIRFIEKMQEHDKD 907

Query: 564  AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
               A      N V +MT+H +KGL+ P+VFL+D     F+ +  ++  ++ ++N      
Sbjct: 908  LGVAPTQLVKNTVNVMTIHGSKGLQFPIVFLIDATHG-FNQQATRETAVVDAVNKVGIEY 966

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                + +        +I  +++  + E  R+LYV +TRA  +L+I    N  N +++   
Sbjct: 967  TDPEEVRYDTPQRQAIISAVQQGERAEDLRVLYVALTRAEQRLVITGSFNEENRRQNLAS 1026

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
             W             +      N+ +  +WI    + 
Sbjct: 1027 AWTRWQKAFQSPATLLGPQLRVNARSFMDWIGLALAR 1063



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 70/235 (29%), Gaps = 17/235 (7%)

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-ESLLSD 776
              + T  +    +K+L +      +     +    E         +   +    +     
Sbjct: 1152 ATKTTAYQSVTDVKRLFEYPDNAVEAQWDYEQQQREKQAQGIYFNNHFAEPAFIKQADEQ 1211

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK---NAKLWPAKEYKNLLLSITRLLE 833
                  G   H + Q +           +     +      + PA   K  +  + R  +
Sbjct: 1212 PAATTIGTATHLVFQKLPLTAGEVSPTLVADEVQRLVDQGLMTPAVAAKINVTGVARFFQ 1271

Query: 834  NPMMTTAMS--CDSYSEVSVSGKINCPK----------KDIIISGRIDQISISQQNIFIF 881
              +    ++     + E   +  +N  +          + +++ G ID    +   I + 
Sbjct: 1272 TAVGQQVLAVPEHYHREEPFAMVMNGAELFKEIKTSDQEQVLLHGIIDGYLETPTGIILV 1331

Query: 882  EYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            +YKT H  P      I   +  QL++Y++ L    P   +   L  V   +   I
Sbjct: 1332 DYKTDHLRPGFGEAEIVDRYRGQLNLYKEALGLMKPLPVVQMGLYLVESEQFITI 1386


>gi|40063254|gb|AAR38081.1| DNA helicase II [uncultured marine bacterium 577]
          Length = 749

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/639 (15%), Positives = 206/639 (32%), Gaps = 138/639 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   Q   + + F +L S     +    K ++ ++IN  S     +  +        +D
Sbjct: 96  LRAHYQDAGLPQAFQILDSA---DQLAVIKRVL-KDINADSEKFPPRQVQWF--INNAKD 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   +++             YE+   K  V+DF +L++ + +LL + ++   ++  
Sbjct: 150 GGIRGSQVEASDDFTRKMAEFYLVYEQQCNKEGVVDFAELLLRSYELLTRNEI---LQKH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                +HIL+DE QDTS +Q++ +R L                +F VGD+ QSIY+F GA
Sbjct: 207 YSGRFSHILVDEFQDTSQLQYKWLRLLAGVEAS----------VFVVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R              II+L  ++RS  +IL   + +          +    
Sbjct: 257 NTGNMKDFERDFHIS--------EIIKLEQNYRSHGNILDAANTLIRNNSGRLDKN---- 304

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW                 + +  D           A  I   
Sbjct: 305 -----------------LW------TSEGDGELLRVYNAPTDLDE--------AAFIVKE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
             ++              I+   I +L R    + ++         +  +S         
Sbjct: 334 TKSLQEEG----------IKLSQIGLLYRSNAQSRVLEHAL----FNASLSYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY-- 469
            +   IK  +A  R I +  DD + + ++  P        + ++  + + +  ++++   
Sbjct: 380 FERQEIKHALAYLRMIANPNDDNALLRIINFPARGIGARSLEQLQDSAKEKGGSLWQAAI 439

Query: 470 ---------------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                                  + A          +  I  +       +  +    +L
Sbjct: 440 ENRGGVALNQGLKGGNLVPNIENRAAGIPKKGLNSFVFLIESMQQSCLELTLPEIIKHML 499

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS 566
                   +   R G   ++ L+E +N      ++   SSL   ++              
Sbjct: 500 EHSGLVPYYNSQREGANRLENLNELINAVTSYIQEAEDSSLTAFLAHASLEAGE--HQSG 557

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +H+ +++MTVH++KGLE   VFL      +F H + +                      
Sbjct: 558 NDHDAIQLMTVHSSKGLEFHSVFLSGLEEGLFPHDNSRN--------------------- 596

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                        +    +E  RL+YV +TRA  ++ + 
Sbjct: 597 -------------EAGGLDEERRLMYVALTRAQRRMYLS 622


>gi|86358422|ref|YP_470314.1| DNA helicase II protein [Rhizobium etli CFN 42]
 gi|86282524|gb|ABC91587.1| DNA helicase II protein [Rhizobium etli CFN 42]
          Length = 808

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 112/669 (16%), Positives = 205/669 (30%), Gaps = 113/669 (16%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+         DF DL+++   + +K      +  +      +IL+DE QDT+ 
Sbjct: 205 RDLYFAYQARLSTLNACDFGDLLMHPIAIFRKNPD---LLKEYHGRFRYILVDEYQDTNT 261

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +       +   P+ +  VGD+ QSIY + GAE   +LR ++        
Sbjct: 262 AQYMWLRLLAQR------SKGEPQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 310

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL     + +  E   G +  +  T                
Sbjct: 311 ---GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDRT---------------- 351

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                       +  +    + +DS  +       AR I   I  +     +        
Sbjct: 352 ----------DPDDVKVQVHASWDSEEE-------ARAIGEEIEQLQRGKHLL------- 387

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D+ +LVR              L     ++          + L I+D MA  R I  
Sbjct: 388 ---NDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLIAQ 440

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++ +P     +  +  +    R     +           +           
Sbjct: 441 PADDLAFERIINTPKRGLGDTTVRALHDYARARDIPMLAAAADIIETDELKPKARKALFD 500

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           VI+       + +     +    IL        + +    E    L+         E   
Sbjct: 501 VIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSME--- 557

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S + +   LE     +    + N + V IMT+H+AKGLE   VFL      +F H+  
Sbjct: 558 --SFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRS 615

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                ++  EE  RL YVG+TRA  +  
Sbjct: 616 LD--------------------------------ESGRAGLEEERRLAYVGITRAKRRCH 643

Query: 664 ICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           I   SN       + +    + D + ++      +++              ++ +     
Sbjct: 644 IWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFAN 703

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLSDNQT 779
           +      +  +    +                  Y  + P      G+   +S  S    
Sbjct: 704 SYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRTIDGELVAKSTSSQPSR 763

Query: 780 FNRG-LIIH 787
           F  G  + H
Sbjct: 764 FTLGDRVFH 772


>gi|300690847|ref|YP_003751842.1| DNA helicase II [Ralstonia solanacearum PSI07]
 gi|299077907|emb|CBJ50546.1| DNA helicase II [Ralstonia solanacearum PSI07]
          Length = 795

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 109/733 (14%), Positives = 209/733 (28%), Gaps = 152/733 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K  Q      +++       +           L A Y+   ++  V+DF +L++   +LL
Sbjct: 138 KNVQYFINGAKEQGRRAGDLEIANEFDRRMADLYAAYDAQCQREGVVDFAELLLRCYELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  D    IR    +   HIL+DE QDT+ +Q+  ++ L      G     +P  +FAVG
Sbjct: 198 RYNDA---IRVHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEAGA----TPNAIFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    ++  +R               I+L  ++RS  +IL   + + + 
Sbjct: 251 DDDQSIYAFRGANVGNMVDFEREFH--------VGHRIKLEQNYRSHGNILDTANHLIAH 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +  +           G    V++++      +                     
Sbjct: 303 NTRRLGKNLRTD---------AGHGEPVRVYQSATDGQE--------------------- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   I + I + T             +I +L R    + +I           
Sbjct: 333 -----AGWIVDEIRDRIASGTA----------RSEIAILYRSNAQSRVIEHAL----FSV 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            I           +   IK  +A  + + + ++D +F  ++  P        + ++    
Sbjct: 374 GIPYKVYGGLRFFERAEIKHALAYLQLLENPDNDAAFGRVVNFPARGVGARSLEQLQDAA 433

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R    ++   +        +K    ++ I ++    +  +  +    ++ A      +  
Sbjct: 434 RLYGVSLAASVPYLTGAAGTKLAAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQG 493

Query: 520 RF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549
              G + I+ L E +             +                               
Sbjct: 494 EKEGLDRIENLQELVTAAQAFVAEEGYGVDAVATALPTRHDGMLRIEGGEAGELRGSDAV 553

Query: 550 --------------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                         L++ L             A  + V++MTVH AKGLE  VVF+    
Sbjct: 554 AELVADGVPMEMTPLVAFLTHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFHVVFITGLE 613

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F H++                                          EE  RL+YV 
Sbjct: 614 EGLFPHENSL----------------------------------QDTDGLEEERRLMYVA 639

Query: 655 MTRASDQLIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +TRA ++L +                  +       + +             +       
Sbjct: 640 ITRARERLYLSFAQSRVLHGQIRYHIRSRFFDELPEETLKWLTPQHAGYSPTRRAQGAQG 699

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           D     +W                   MD                     +  S      
Sbjct: 700 DSAWGRDWFKRPERGDGEAYTGRPTGGMDTGNTYADTKRAAGTGFRVGQSVFHSKFGEGV 759

Query: 767 KTNLESLLSDNQT 779
            T LE   +D + 
Sbjct: 760 ITTLEGEGADARA 772


>gi|294778328|ref|ZP_06743753.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510]
 gi|294447835|gb|EFG16410.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510]
          Length = 796

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 97/704 (13%), Positives = 206/704 (29%), Gaps = 131/704 (18%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           Q      ++       + S                + +   Y E  +++  +DF+DL++ 
Sbjct: 140 QARISNAKNHLVFPDAYASNAELYQYDVNAKVPATRDIYRRYWERCRQSDAMDFDDLLVY 199

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
           T  L +       I  K  ++  ++L+DE QDT+  Q  ++  LT +           + 
Sbjct: 200 TYLLFRDYPE---ICRKYAEQFRYVLVDEYQDTNFAQHSIVLQLTRE----------HQR 246

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +  VGD+ QSIYSF GA    +L+  ++         +   + +L  ++RST  I+   +
Sbjct: 247 VCVVGDDAQSIYSFRGANIDNILKFTQLY--------KGAKLFKLEQNYRSTQTIVCAAN 298

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +             S                             +   +     + +  
Sbjct: 299 SLIEKNSEQIRKEVFS----------------------------EKAKGEPIGVFNAYSD 330

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           + +          +A  +  +   +              D  +L R    + +     R 
Sbjct: 331 VEEG-------EIVANQMVKLRSREH---------YSYNDFAILYRTNAQSRIFEEALR- 373

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +               IKD+++  R  ++  D+ +F  +L  P     +  + K
Sbjct: 374 ---KRSLPYKIYGGLSFYQRKEIKDVISYFRLAVNPNDEEAFKRVLNYPARGIGDTTLNK 430

Query: 456 -ICTQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            I        +++        Y         +K Q   + +   I      + ++   +I
Sbjct: 431 VIDAAAQHHVSLWMVLEEPLAYGLNINKGMHTKLQGFRELVESFIVEVPKKNAYELGAMI 490

Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYP 558
           +       +       E     + ++E +N           E N    L + +SE+    
Sbjct: 491 VRQSGIMNEIYQSNDPENLSRQENIEELINGMHDFCATREEEGNENILLTDFLSEVSLLT 550

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                    +  ++ +MT+H+AKGLE   VF+V     +F        +           
Sbjct: 551 DQD-NEKEGDAEKITLMTIHSAKGLEFKNVFVVGMEENLFPSALSLNSY----------- 598

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                     EE  RL YV +TRA +   +    +     K   
Sbjct: 599 -----------------------KELEEERRLFYVAITRAEEHCYLSFAKSRFKYGKMEF 635

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
            +    + D   +  ++ + +       +    +    +      L  E   +       
Sbjct: 636 SSPSRFLKDIDVHFLKLPQEEQMARRIDERASRFCREQNERAARSLFDEPASQSSYGRSS 695

Query: 739 IPKKLFSPIKNDINEPYI--LNPSTIDTKGKTNLESLLSDNQTF 780
                          P +  + PS      K   E++   +   
Sbjct: 696 SNISGGQKTFLVGERPKVEIIRPSIPRNLTKVGPETVSKPSAAR 739


>gi|305681998|ref|ZP_07404802.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658471|gb|EFM47974.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium
           matruchotii ATCC 14266]
          Length = 898

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 114/741 (15%), Positives = 214/741 (28%), Gaps = 156/741 (21%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKSTL-ASLTLAKY 132
                   +I +++   +     +L  +       ++ D         +T          
Sbjct: 207 DDSKRLLGMIAKDLQINAQKFPPRLLAAAISALKTELTDPDAASDEAAATRNPFDRTIAE 266

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+   +    LDF+DLI  T  +         I     +   H+LIDE QDT+  Q
Sbjct: 267 VYTEYQRRLRAANALDFDDLIGETVRVFTTHPE---IAAYYRKRFRHVLIDEYQDTNHAQ 323

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +I +L         T      L  VGD  QSIY+F GA  + +   +R   +      
Sbjct: 324 YVLISTLV-------GTGPDASELSVVGDSDQSIYAFRGATIRNIEEFERDYPQ------ 370

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL+  + V S     +                        LW 
Sbjct: 371 --ARTILLEQNYRSTQNILSAANAVISHNHGRREKK---------------------LW- 406

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                        + +     +   +       AR IA  I  +              + 
Sbjct: 407 ------TDHGAGAKITGYVADNEHDE-------ARFIATEIDALFDMG----------VG 443

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             DI V+ R    +  I  +         I           +   I+DL+A  R + +  
Sbjct: 444 YGDIAVMYRTNNSSRAIEEVF----IRTGIPYKVVGGTRFYERKEIRDLIAYLRVLDNPT 499

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKF--------QH 483
           D++S   ++ +P     +  I  +     +   +  + +   A+  ++            
Sbjct: 500 DEISLRRIINTPRRGIGDRAIATVNLYAENFGMSFADALVDAAHGKVTALGTRAKNAIAA 559

Query: 484 VIKYIHELIHIAQFCS--------PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
            ++ +  L   A   +             + IL A   + +  +    +    +D L+E 
Sbjct: 560 FLELMDGLRVDAAEATNAITGLPDIGVVVSRILDATGYKAELEASTDPQDGARLDNLNEL 619

Query: 533 LNFTLRNEQN-------------------------------SYSSLQELISELEQYPPTI 561
           ++                                          S+   + ++     + 
Sbjct: 620 VSVAREFSSEAANLMAYAAMGAGTGAGVEGNDPAEPMVGEPQPGSIHAFLEKVSLVADSD 679

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           +    +  N V +MT+HTAKGLE PVVFL+      F H                     
Sbjct: 680 QLPDDS-TNVVTLMTLHTAKGLEFPVVFLIGWEDGQFPH--------------------- 717

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                        L          E  RL YVG+TRA + L + +    ++   +     
Sbjct: 718 -------------LRALGDPQELAEERRLAYVGITRARETLYLTRAMLRASWGNAVANPA 764

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              + D        ++ +       D+W A  W                       + P 
Sbjct: 765 SRFLEDIPEKLMYWRREEPGAGGWDDDWGASGWGGGSFVGGYGGYGGYGGAGGYSGRKPG 824

Query: 742 KLFSPIKNDINEPYILNPSTI 762
             +   K   +       + +
Sbjct: 825 GSYRKPKIPRSSRSSTPAANL 845


>gi|238796584|ref|ZP_04640091.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia mollaretii ATCC 43969]
 gi|238719562|gb|EEQ11371.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia mollaretii ATCC 43969]
          Length = 1200

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 125/982 (12%), Positives = 285/982 (29%), Gaps = 142/982 (14%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMET-GNPTILKKAQTLQQASQTQCIEERFSL 68
            +E+    ++ +        +      S       +  + K++ + +           ++ 
Sbjct: 213  DETILSRHQQIVVQIDTVKAQWRAAASELEALISSSGVDKRSYSTKHLPNWLEKVGAWAE 272

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
              +         +K   +    K            Q     + DR     +    L    
Sbjct: 273  QETGDYQLPKELEKFRQSVLFEKTKKGAAP-----QHALFSVIDRIFEQPLTLRDLILAR 327

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
                +    ++ K++   L F+DL+   + +L++      +   I       +IDE QDT
Sbjct: 328  AISEIRTSVQQEKRQRAELGFDDLLSKLDAVLQQSG-GELLAKSIRTRYPVAMIDEFQDT 386

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
               Q+ +  +L                L  +GD KQ+IY+F GA+    +R +       
Sbjct: 387  DPQQYRIFHTLYGG--------QEECGLLLIGDPKQAIYAFRGADIFTYIRARSEVSAHY 438

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
            T          L  ++RS+  ++  V+++FS+ +      +     +             
Sbjct: 439  T----------LETNWRSSFPMVQSVNRLFSLVDVPFLFEQIPFIAVS----------AA 478

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIF 363
            +    +  +      P    W    + +       ++AR+ A  I + +         + 
Sbjct: 479  EKNSHLSFEIKGDKQPAISFWLQPGEGIGVSEYQQLMARQCAAQIRDWLTAGQNGLAQLV 538

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
            +    R +QA DI +LVR R +  L+      L      SV  ++R  + D    KDL+ 
Sbjct: 539  TVDGSRPVQASDITILVRSRAEAALVRDALSAL---AIPSVYLSNRDSVFDTAEAKDLLW 595

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            L + +L+ E + +    + + +       +  +       + + E   ++        + 
Sbjct: 596  LLQAVLAPEQERALRSAMATGVLGLDAKMLDALNHNERAWDALVEEFDRYRQHWQR--RG 653

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNE 540
            V+  + E++              +L    G ++            L E L      L +E
Sbjct: 654  VLPMLREIMACRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSE 701

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                  L + I++        +    ++ + V+++T+H +KGLE P+V+L   G+     
Sbjct: 702  HALIRWLAQQIAQPNHQLDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVGNFRQQQ 761

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
              +                          N   +     ++    E  RLLYV +TRA  
Sbjct: 762  DVLYHDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRAVY 808

Query: 661  QL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDE--------------------- 693
                    +I        +   ++     ++      D                      
Sbjct: 809  HCSVGIAPLIKGGRKKQGDSDVHRSALGYLLQQGQAGDAQYLADKLAELTASSGGDISVS 868

Query: 694  -RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
               +          +   A      + +     R  +   L             +   + 
Sbjct: 869  LAERPDDTPWQPQPEIVPALAARQFNRQVQDYWRVTSYSGLQQHGSSKSGASQSLSVPLQ 928

Query: 753  EPYILNPSTIDTKGKTNLE---SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
            E      +    +     E   +  +  +    G  +H LL+ +       +        
Sbjct: 929  ELLPRLDTDAVGEQALATEISLTPHTFPRGAAPGTFLHDLLESMDFSQPIDQSWLAEQLQ 988

Query: 810  TKNAKLWPAKEYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSVSGKINCPKK------ 860
             +             +  I ++ L      +         +E+     I+   +      
Sbjct: 989  RQGFGDQWLPMLSQWINDILQVPLNTTGVTLAGLSPQSKQAELQFYLPIDTLLRASELDS 1048

Query: 861  --------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY-- 898
                                  ++ G ID +   +   ++ +YK++    +   +     
Sbjct: 1049 LIKHYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWEGKYYLLDYKSNWLGAESSAYTLEAM 1108

Query: 899  -------THIAQLSIYEKILKD 913
                    +  Q  +Y   L  
Sbjct: 1109 THAMAEHRYDLQYQLYTLALHR 1130


>gi|306844312|ref|ZP_07476904.1| DNA helicase II [Brucella sp. BO1]
 gi|306275384|gb|EFM57125.1| DNA helicase II [Brucella sp. BO1]
          Length = 858

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 112/694 (16%), Positives = 196/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                       +   L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPRGAGERSELGVSENKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|315634405|ref|ZP_07889692.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC
           33393]
 gi|315476995|gb|EFU67740.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC
           33393]
          Length = 724

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 102/552 (18%), Positives = 186/552 (33%), Gaps = 116/552 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  ++DF ++++ + +L   + +   I  +  Q   HIL+DE QDT+ I
Sbjct: 175 RIYQIYQDACDRAGLVDFAEILLRSYELFLHKPL---ILQRYQQRFQHILVDEFQDTNKI 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E IR L                +  VGD+ QSIY + GA+ + +    +         
Sbjct: 232 QYEWIRLLAG----------KTGKVMIVGDDDQSIYGWRGAKIENIQLFLKEFAN----- 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   +++ S   N  G +  S                    
Sbjct: 277 ---AQTIRLEQNYRSTMNILQAANELISNNNNRLGKNLWS-------------------- 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              + F+ L +       A  +A  I   I              
Sbjct: 314 --------EGNQGDPVGIYAAFNELDE-------ALFVASQIKTWIEDGG---------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D  +L R    + +I           +I           +   IKD +A  R I ++
Sbjct: 349 KLNDCAILYRSNSQSRVIEEAL----IRSQIPYRIYGGMRFFERQEIKDALAYLRLIANR 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQHV 484
           +DD +F  ++ +P     +  +  +    R    T+++         K A    +     
Sbjct: 405 QDDAAFERVINTPPRGIGDRTLDTLRNLTREHQITLWQATNLALQENKLAGRAATALLRF 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ I+ L    +          ++      + +    G +    I+ L+E ++      +
Sbjct: 465 MELINSLQRDTEEMPLFAQTDFVIKHSGLYEMYKQEKGEKGEVRIENLEELVSAAREFIK 524

Query: 542 -NSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 + EL + L           +A H   V +MT+H+AKGLE P VF++     +F 
Sbjct: 525 PEEAEDMTELTAFLTHASLEAGEEQAAPHQACVEMMTLHSAKGLEFPRVFMIGVEEGLFP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                   +    EE  RL YVG+TRA 
Sbjct: 585 S----------------------------------FRSFEEAGRLEEERRLAYVGITRAK 610

Query: 660 DQLIICKHSNTS 671
            +L I    +  
Sbjct: 611 QKLTISYAESRR 622


>gi|300930020|ref|ZP_07145453.1| DNA helicase II [Escherichia coli MS 187-1]
 gi|300462110|gb|EFK25603.1| DNA helicase II [Escherichia coli MS 187-1]
          Length = 700

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 151 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 207

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 208 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 252

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 253 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 288

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 289 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 327

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 328 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 380

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 381 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 440

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 441 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 500

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 501 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 560

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 561 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 586

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 587 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 629


>gi|323499636|ref|ZP_08104604.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326]
 gi|323315237|gb|EGA68280.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326]
          Length = 723

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 184/549 (33%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+EA  +  ++DF ++++  ++LL+       IR        HIL+DE QDT+ I
Sbjct: 172 QLYTAYQEACDRAGLVDFAEILLRAHELLRD---KKHIREHYQARFKHILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + +            
Sbjct: 229 QYAWLRMMAG----------PDAHVMIVGDDDQSIYGWRGAKIENIEKFTLEFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I L  ++RST  IL   + + +      G                      +LW
Sbjct: 273 --SVNTIRLEQNYRSTKTILEASNALIANNTERMGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S ++ L +       AR     I                  
Sbjct: 310 -------TEGAEGEPISVYSAYNELDE-------ARFAVNKIKEWQDKGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R + ++
Sbjct: 348 --NDAAMLYRNNAQSRVLEEAL----IQASLPYRIYGGMRFFERQEIKDALSYLRLMANR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R +  T++E   +       A          
Sbjct: 402 NDDAAFERVVNTPTRGLGDKTLETIRFAARDQGSTMWEASIRLLDDKVLAGRAAGALSRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           ++ I+ L       + H+    ++        +    G +    I+ L+E +  T + E+
Sbjct: 462 VELINALEDDTCEMALHEQTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEK 521

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 522 PEEAEEMTLLTAFLTHAALEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      +    EE  RL YVGMTRA 
Sbjct: 582 SQMS----------------------------------AEEAGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHS 668
           ++L I    
Sbjct: 608 EKLYITYAE 616


>gi|294787676|ref|ZP_06752920.1| DNA helicase II [Simonsiella muelleri ATCC 29453]
 gi|294483969|gb|EFG31652.1| DNA helicase II [Simonsiella muelleri ATCC 29453]
          Length = 735

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 98/584 (16%), Positives = 186/584 (31%), Gaps = 124/584 (21%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A YE+  ++  V+DF +L++ + ++L
Sbjct: 145 RTLQGFINAQKEAGLRANVLDAPDPFTQRLIKCYAEYEQLCQREGVVDFAELLLRSYEIL 204

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                   +         HIL+DE QDT+ +Q+  ++ L +              +FAVG
Sbjct: 205 NANPA---LLAHYQSRFTHILVDEFQDTNKLQYAWLKLLAD----------GGAAVFAVG 251

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    + +  R  Q            I+L  ++RS  +IL   + V   
Sbjct: 252 DDDQSIYRFRGANVGNMTQFLRDFQINQP--------IKLEQNYRSVGNILAAANAVIQN 303

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             +  G +                                    ++ S+ + ++ + +  
Sbjct: 304 NTDRLGKNL----------------------------RTDAEAGEKISFFAAYNDIAE-- 333

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   I  +               Q   I +L R    + ++           
Sbjct: 334 -----ADFIVNEIKELKRE----------NWQLNQIALLYRSNAQSRVLEQAL----FQA 374

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            IS          + L +K  +A  R  ++  DD + + ++  P        I  I    
Sbjct: 375 AISYKIYGGLRFYERLEVKHALAYLRLAINPNDDNALLRVINFPPRGIGTRSIENIQAAA 434

Query: 461 -HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
             +  ++++     A     K    I+ + +L       S  +    +L      + + +
Sbjct: 435 QQQNSSLWQA----AQGMGKKIAPFIELVEQLRGQVGVVSLAELVKSVLDLSGLIKHYQN 490

Query: 520 RFG---NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTIKRAH 565
           +      E ++ L+E +N       E      L E         +I+ L           
Sbjct: 491 QKQISEQERVENLEELVNAATGFRVEDVQLDMLPENLADNPALPVIAFLSNAALESGENQ 550

Query: 566 SANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
           + + +  V++MTVH AKGLE   VF+       F  +                       
Sbjct: 551 AGSGDQAVQLMTVHAAKGLEFDAVFISGMEEGRFPSE----------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                      +   +     E  RL+YV +TRA  +L I    
Sbjct: 588 -----------LSMNEAGGLAEERRLMYVAITRARKRLYISMAQ 620


>gi|191637996|ref|YP_001987162.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|190712298|emb|CAQ66304.1| ATP-dependent DNA helicase [Lactobacillus casei BL23]
 gi|327382072|gb|AEA53548.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei LC2W]
 gi|327385216|gb|AEA56690.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei BD-II]
          Length = 751

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 120/699 (17%), Positives = 214/699 (30%), Gaps = 133/699 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +A       E+ +L+          P K    + I       K +L   Q          
Sbjct: 110 RAFTIADPAEQLTLVKHILADFNLDP-KRYDPKSILGAISSAKNELVDPQ---------- 158

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            TY   ++      +   + A Y++  + +  LDF+DLI+ T  L +K            
Sbjct: 159 -TYANEQANSPFTKVVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKD---KETLAFYQ 214

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++  +I +DE QDT+  Q++++  L E +            L  VGD  QSIY + GA  
Sbjct: 215 RKFRYIHVDEYQDTNEAQYQLVHMLAEGY----------HNLCVVGDADQSIYGWRGANM 264

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + +L  K+   K          +I L  ++RST  IL+  + V    +N Q  +      
Sbjct: 265 QNILDFKKDYPK--------AQVILLEQNYRSTKTILSAANNVIQNNQNRQAKT------ 310

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                          LW       +++   +   + +      +   A  + RRI   I+
Sbjct: 311 ---------------LW------TENREGDKITYYRA----QSETDEAIFVIRRIEAEIA 345

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           +                +  D  +L R    +  I            I           D
Sbjct: 346 DNHR-------------KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYD 388

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK- 472
              I+D +A  R +++ EDD+SF  ++  P        + K+         ++ E     
Sbjct: 389 RKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRGIGNTSVEKLEAFANEHDWSLLEAAANA 448

Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-- 526
                A     +     K I +L    +  +  +    IL          +    E    
Sbjct: 449 ELSPIAGKARGQLAKFGKMIQQLGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTR 508

Query: 527 -DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            + L+E L+ T         E        + ++EL             +  EV +MT+H 
Sbjct: 509 IENLEELLSVTQGFDSRYQPENEDSDIFVDFLAELALLSDQD--DVEEDAQEVTLMTLHA 566

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFLV     +F                                         
Sbjct: 567 AKGLEFPVVFLVGMEEGLFPLSRASMDESELEEERRL----------------------- 603

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                       YVG+TRA  +L +          +         + +   +   V    
Sbjct: 604 -----------AYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPDLLEVIGTT 652

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
              S +       + +   P +   +++      +    
Sbjct: 653 QPKS-DIPFINRTDRAFSSPYSRHADQKTATPVTVQAAP 690


>gi|319411282|emb|CBY91690.1| DNA helicase II [Neisseria meningitidis WUE 2594]
          Length = 735

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 186/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                S  +    IL      + + ++ G   + +D LDE +N  +    E +++  L E
Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|317493212|ref|ZP_07951635.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918872|gb|EFV40208.1| exodeoxyribonuclease V [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1191

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 142/1001 (14%), Positives = 309/1001 (30%), Gaps = 159/1001 (15%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ------------TQ 60
             E +  DL P  + ++  + + ++   ET      +  + +                   
Sbjct: 189  PEQLLADLQPYLHGELPMLRQAIA-DDETLTQRHQQIIERIDAVKAHWREVAGEIESLIV 247

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS---------------QD 105
                     SS FL +  T   +  T E       L ++LK+                Q 
Sbjct: 248  DSGVDKRSYSSRFLPKWLTTVGDWATSETRD--YQLPDELKRFGQNLLLEKTKKGTPPQH 305

Query: 106  EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                  D+     +    L        +    ++ K+++  L F+DL+   +  L +   
Sbjct: 306  ALFVAIDQLLAEPLSLRDLLLSRALSEVRTSVQQEKRQHAQLGFDDLLSRLSQALNQSG- 364

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +   I Q     +IDE QDT   Q+ + +++       K + S+   L  +GD KQ+
Sbjct: 365  GDVLAQAIRQRYPVAMIDEFQDTDPQQYGIFQAIYLQPQSDKQSDSA---LLLIGDPKQA 421

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY+F GA+    +  +   +              L  ++RS+  +++ V++VFS  E+  
Sbjct: 422  IYAFRGADIFTYMYARSEVK----------HHYTLGTNWRSSPGMVSAVNQVFSAVESPF 471

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              ++     +   +++  Q    ++                  W    +          L
Sbjct: 472  LFADIPFLPVS--AAKKNQALRFEI--------AGDIQKAMHIWLQPGEGCGTVEYQQSL 521

Query: 346  ARRIAYTISNMIGTDTI------------FSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
            A + A  I + +                       + ++A DI +LVR R +  L+    
Sbjct: 522  AAQCAAQIRDWLTAGQQGKALLYTDKKDSLGREIAKPVEASDITILVRSRAEAALVRDAL 581

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
              L      SV  ++R  +      +DL+ L + +L+ E +      L + L   +   +
Sbjct: 582  SAL---AIPSVYLSNRDNVFQTPEARDLLWLLQAVLAPEQERLLRSALATSLMGLNSQQL 638

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAK 511
             ++    ++ E +++ +    +    ++Q   V+  + E++              +L ++
Sbjct: 639  NEL----NQDERLWDALVDEFDAYRQQWQKQGVLPMLREIMGRRH------LAENLLASE 688

Query: 512  KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSAN 568
             G ++            + E L        +  + L+ L  +++         +    ++
Sbjct: 689  GGERRLTDVL------HIGELLQEASLTLDSEPALLRWLAQQIDSPEVQSENQQLRLESD 742

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             + V+++T+H +KGLE P+V+L   GS     + +                     +   
Sbjct: 743  RHLVQVVTIHKSKGLEFPIVWLPFIGSYRLQKQPLYHDRD-------------SFNAVLD 789

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII------CKHSNTSNEKKSNQRTWY 682
             N   D +K  ++    E  RLLYV +TR+     +              E   +     
Sbjct: 790  LNYSDDAVKLAEEERLAEDLRLLYVALTRSVYHCSLGLAPLFLGGRKKQGETDVHNSAIG 849

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIP 740
             ++      D  +    L    N D  +    +        T  E +E   +L   +   
Sbjct: 850  HLLQKGEPGDAAMLLACLERLQNDDILVTTVEAQDGSPWVATAQEAQELQAKLFTRKMQD 909

Query: 741  KKLFSPIK----------NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                +              D+     ++             +  +  +    G  +H LL
Sbjct: 910  DWRVTSYSGLQQHGSSQFLDLLPKLDVDAVGESEVESIPALTPHTFPKGAAPGTFLHSLL 969

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LEN--PMMTTAMSCDSYS 847
            + +                 +           + L +I R  L    P +         +
Sbjct: 970  EPMDFTQPRDITGLTEQVTQQGLNTEWVPVLDSWLDAILRAPLAESGPCLAQLAPSQVQA 1029

Query: 848  EVSVSGKINCPKK--------------------------DIIISGRIDQISISQQNIFIF 881
            E+     I    +                            ++ G ID +   Q   ++ 
Sbjct: 1030 ELQFYLPIEQLVRSAELDALIKRYDPLSAQCAPLDFRQVRGMLKGFIDLVFFWQGRFYVL 1089

Query: 882  EYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
            +YK++        +             +  Q  +Y   L  
Sbjct: 1090 DYKSNWLGEDASAYTQEAMVAAMAEHRYDFQYQLYSLALHR 1130


>gi|300950421|ref|ZP_07164344.1| DNA helicase II [Escherichia coli MS 116-1]
 gi|300450267|gb|EFK13887.1| DNA helicase II [Escherichia coli MS 116-1]
          Length = 689

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 140 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 196

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 197 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 241

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 242 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 277

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 278 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 316

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 317 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 369

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 370 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 429

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 430 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 489

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 490 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 549

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 550 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 575

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 576 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 618


>gi|325283117|ref|YP_004255658.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
 gi|324314926|gb|ADY26041.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
          Length = 767

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 114/743 (15%), Positives = 223/743 (30%), Gaps = 134/743 (18%)

Query: 1   LKNRFGLSLNESYE-----LIYKDLWPLPYFQVSDINK-YVSLSMETGNPTILKKAQT-- 52
           L N +G+   E            ++       V + ++ ++S     G   +    +   
Sbjct: 75  LINHYGVDAGEILAVTFTNKAAAEMRERAGRLVPEADRLWMSTFHSAGVRILRAYGEHIG 134

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L++       +++  +L                     +    L ++ K + +       
Sbjct: 135 LKRGFVIYDDDDQLDILKQITGGMSG-----FGPDTNLRAVRGLIDRAKSNLE----TPA 185

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +               L       YE  KK    +DF DLI  T  L ++      +  K
Sbjct: 186 QMERSGEPYLAGIPRELMAETYRQYEARKKAQNAIDFGDLITETVRLFQE---VPAVLDK 242

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +      I +DE QDT+  Q+E+ R L           S    L  VGD  QSIY F GA
Sbjct: 243 VQNRARFIHVDEYQDTNKAQYELTRLLA----------SRDSNLLVVGDPDQSIYRFRGA 292

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + +L  ++              +  L  ++RS+A++LT  +++          +    
Sbjct: 293 DIQNILDFQKDYP--------DAKVYRLESNYRSSANVLTAANRLIENNAERLDKTLRPV 344

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
               H                               +    D   +          +A  
Sbjct: 345 KEGGH----------------------------PVVFHRASDHRGEGD-------FVADW 369

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           ++ + G                D+ VL R    + +I    R       I          
Sbjct: 370 LTRLHGEGR----------SFSDMAVLYRTNAQSRVIEESLR----RVGIPARIVGGVGF 415

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQ 471
            D   IKD+++  R  L+  DD++   ++  P     +  + + +   R    +V E   
Sbjct: 416 YDRREIKDILSYARLALNPADDVALRRIVGRPRRGIGDSSLARLLDWARANGVSVLEACA 475

Query: 472 KFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNE 524
           +         G +K       +  +   A    P  F   ++               G  
Sbjct: 476 RAEQDSVLERGANKATEFAALMAAMSEAADNYEPAPFLRFVMETSGYLDMLRQEGTEGQV 535

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHT 579
            ++ L+E ++      Q +  ++ + + +            +        + V +MT+H 
Sbjct: 536 RLENLEELISAAEEWSQENQGTIGDFLDDAALVASVDDMRAAQENKGVPEDAVTLMTLHN 595

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVF+V     +   ++                                     
Sbjct: 596 AKGLEFPVVFIVGVEEGLLPSRNSLN---------------------------------- 621

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           ++   EE  RL YVG+TRA ++L +    N     ++N       + +   + E      
Sbjct: 622 ERGGIEEERRLFYVGITRAMERLFLTAAENRMQYGRTNAAEDSRFLEEIGQDFETWNSFG 681

Query: 700 LTNSINKDEWIAYEWSTHHPENT 722
                 +  W  +  +     + 
Sbjct: 682 QPVDYKQKTWKDFRPAAVPQVSA 704


>gi|325962273|ref|YP_004240179.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468360|gb|ADX72045.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 830

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 112/715 (15%), Positives = 212/715 (29%), Gaps = 140/715 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   +         S  +      +      +      L+         +  
Sbjct: 119 AAAEMRERIEALVGGRAKIMWISTFHSSCVRILRQEAANV-----GLKSNFSIYDSADSL 173

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P+K    + I  K   LK +L              +           
Sbjct: 174 RLVTQVSKGLDLDPKK-FAPKAIQHKISALKNELIDV----------DSYASAANYNDPF 222

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  ++   +DF+DLI  T  + +       +     +   H+L+DE Q
Sbjct: 223 EQAVADVYKGYTQRLRQANAMDFDDLIAETVYMFRAFPA---LAESYRRRFRHVLVDEYQ 279

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R +                L  VGD  QSIY+F GA+ + ++  ++    
Sbjct: 280 DTNHAQYALVREIV-------GQGPGASELTVVGDSDQSIYAFRGADIRNIVEFEKDYP- 331

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                  +   I+L  ++RST +IL+  + V S   N       +     H+       G
Sbjct: 332 -------EARTIKLEQNYRSTQNILSAANSVISRNPNRPEKRLWTAEGEGHKII-----G 379

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                                +    A+ IA  I  +   D      
Sbjct: 380 YV------------------------------GENEHDEAQFIAKEIDRLQDED------ 403

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               ++  D+ +  R    +  I  +         +           +   IKD +A  R
Sbjct: 404 ---NLRPGDVAIFYRTNAQSRSIEDVL----VRVGLPYKVVGGTRFYERKEIKDALAYLR 456

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479
            +++ +DD++   +L  P     +     +        T +    + A+          +
Sbjct: 457 VLVNPDDDVNLRRVLNEPKRGIGDRAEGAVAALAQRERTSFMAAARRADQAPGMATRSVN 516

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                +K + +L  +A           +L          S    +    ++ L E +   
Sbjct: 517 AVLGFVKLLDDLAEVAAGSGAAAALEAVLEQTGYLATLRSSTDPQDESRVENLAELVAVV 576

Query: 537 LRNEQNSYSS-LQELISELEQYPPTIKRAHSANHN------------EVRIMTVHTAKGL 583
              EQ +    L+  + ++       +   +   +             V +MT+HTAKGL
Sbjct: 577 REYEQENPEGTLEAFLEQVSLVADADQIPDAPGADIDEAVAEAKRLGVVTLMTLHTAKGL 636

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL      +F H+                                          
Sbjct: 637 EFPVVFLTGMEHGLFPHQ----------------------------------RSATDPKE 662

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             E  RL YVG+TRA  +L + +    S   +S        + +        K+ 
Sbjct: 663 LAEERRLAYVGLTRARKRLYVTRSEVRSMWGQSQYNPASQFLEEIPAELLEWKRE 717


>gi|157960297|ref|YP_001500331.1| DNA-dependent helicase II [Shewanella pealeana ATCC 700345]
 gi|157845297|gb|ABV85796.1| DNA helicase II [Shewanella pealeana ATCC 700345]
          Length = 721

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 96/586 (16%), Positives = 189/586 (32%), Gaps = 116/586 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+++  +  ++DF ++++  ++L   +     I         HIL+DE QDT+ IQ
Sbjct: 173 IYQIYQDSCDRAGLVDFAEILLRAHELWLNKPH---ILDHYQDRFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            S   +  VGD+ QSIY + GA+ + + +             
Sbjct: 230 YAWIRVLAG----------STANVMIVGDDDQSIYGWRGAQVENLHKFLADFPA------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RS+ +IL   +++ +   +  G                       LW 
Sbjct: 274 --AQTIRLEQNYRSSGNILNASNELIANNPDRMGKK---------------------LW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +       F+ + +       AR I   I++                 
Sbjct: 310 ------TDDKDGEPIGLYCAFNEMDE-------ARFIVGRITDWQDEGGKLE-------- 348

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            I+          +   IKD M   R I ++ 
Sbjct: 349 --DCAILYRSNAQSRVLEEAL----LHKGIAYRIYGGLRFFERQEIKDAMGYLRLINNKN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P     +  +  I  T R +  T++E   +            +  +  +
Sbjct: 403 DDAAFERVVNTPTRGIGDRTLDIIRTTARQQEMTLWEASLRLLEEKVLNGRAANAVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQ 541
             I  +       S H     ++     +  + +    +     + L+E +         
Sbjct: 463 DLIVAMRMDTDEQSLHRMTDHVIQTSGLKAMYEAEKSEKARARVENLEELVTAARSFVMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL + L        +       + V++MT+H+AKGLE P+VF+      +F  
Sbjct: 523 EEIEDMGELNAFLSHAALEAGEGQADEFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                           +E  RL YVGMTRA  
Sbjct: 583 QMAIDEG----------------------------------DRLDEERRLCYVGMTRAMQ 608

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +L I    +     + +       V +      +  +++   S   
Sbjct: 609 KLYITYAESRRIYGRESFARPSRFVKEIPEQYVQEIRMRTQVSAPA 654


>gi|325145300|gb|EGC67578.1| DNA helicase II [Neisseria meningitidis M01-240013]
          Length = 735

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                S  +    IL      + + ++ G   + +D LDE +N  +    E +++  L E
Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +         V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGVGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|145219316|ref|YP_001130025.1| ATP-dependent DNA helicase PcrA [Prosthecochloris vibrioformis DSM
           265]
 gi|145205480|gb|ABP36523.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeovibrioides DSM
           265]
          Length = 728

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/552 (18%), Positives = 183/552 (33%), Gaps = 118/552 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y    K+N  LDF+DL+I   +L         +  ++ +   +ILIDE QDT+
Sbjct: 170 ASQIYELYARKLKENNALDFDDLLIKPLELFGNHPE---VLEELQELFRYILIDEYQDTN 226

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ V + L           S  R +F VGD+ QSIYS+ GA+   +L  +   +    
Sbjct: 227 RAQYLVTKMLA----------SRHRNIFVVGDDAQSIYSWRGADISNILNFQDDYE---- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                    +L  ++RST  IL   + V S  +                           
Sbjct: 273 ----DARTFKLVENYRSTGTILQAANSVISRNQRQIKK---------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
             E V      +     E++                A ++   I  +           ++
Sbjct: 307 --ELVAKGATGEPLTLIEAFN-----------ERQEAEKVGEWIRKL---------SLEK 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +  +   +  R    + ++    R     +++               IKD +A  RF+ 
Sbjct: 345 QLDFRSFAIFYRTNAQSRVLEDTMR----QHRLPYKIFGSVSFYKRKEIKDAVAYLRFVQ 400

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK-----FANCGISKFQH 483
           +  D  S + ++  P     +  I K+    R    ++YE I+      +    +S    
Sbjct: 401 NDRDSESLLRIINFPPRKIGDVSIGKLRDFARERGISLYEAIRCAPQGGYQQRLVSALSS 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               I  L  IA+  + ++    +           +    E     D L E L+      
Sbjct: 461 FSSVIESLREIAETGTVYEVLNSLFVQTGLLSLLQAENTPESMARHDNLQELLSMARDFS 520

Query: 541 QNSYSS--LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++  +  L + +  +             + N V +MTVH +KGLE PVVF+     ++F
Sbjct: 521 DHNPDAGMLGDFLENIALASD--YDETQESDNFVSLMTVHASKGLEFPVVFITGLEERLF 578

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                +   +    EE  RL YV +TRA
Sbjct: 579 P------------------------------------LNCYEPEQMEEERRLFYVAVTRA 602

Query: 659 SDQLIICKHSNT 670
            +++ +    + 
Sbjct: 603 REKIFLSWAQSR 614


>gi|148285059|ref|YP_001249149.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong]
 gi|146740498|emb|CAM81056.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong]
          Length = 716

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 105/554 (18%), Positives = 191/554 (34%), Gaps = 119/554 (21%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
               +A+ +  HY+   +K+ V+DF DL++    +  +      +      +  ++ IDE
Sbjct: 160 PIYQVAQKIYQHYQTELQKSNVVDFGDLLLYNMKIFSEYPD---VLNFYQTKFKYVFIDE 216

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+ +Q+   ++L           +    L  VGD+ QSIYS+ GA  + +L+ K   
Sbjct: 217 YQDTNNVQYFWAKALV----------NLHENLCCVGDDDQSIYSWRGANIENILKFKDDF 266

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
           +           +I+L  ++RST  ILT    +    +                      
Sbjct: 267 KN--------AKLIKLEQNYRSTNSILTAASSIICNNKYRHDKK---------------- 302

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW       + Q +        Y D           AR I+  I  +I      S
Sbjct: 303 -----LW------TNKQSDQPIRIVYCYNDREE--------ARFISSEIKKLITKSPNLS 343

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      I VLVR      ++            I       F   D + I D++A 
Sbjct: 344 -----------IAVLVRSSSQAHVLEESF----FSNNIKYQVIGGFRFFDRMEIADMIAY 388

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFANCGISK--- 480
            R +++  D+L+   ++  P  +     +  I     + E +++  I++  +  + K   
Sbjct: 389 LRVLVNHNDNLALTRIINVPKRSIGPATLHTIKEYAQQHESSMFTAIEQILSKKLLKPQL 448

Query: 481 ---FQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
               Q +I    E   + +   +P     +I       Q       ++    I+ + E +
Sbjct: 449 ELTLQSLINKFKEWHSLYKAGYTPAKVTEIICEDSNYLQMLKDDKSSQSDRRIENIQEMI 508

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              L       +S++E +     +       ++ +++ V +MT+H +KGLE  VVFL   
Sbjct: 509 RAMLDY-----NSIEEFLEHTSLFLERDNGINAKDNSAVSLMTLHASKGLEFDVVFLPGL 563

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF H+                                       +   EE  R+ YV
Sbjct: 564 EEGVFPHQKSLI--------------------------------AEDQRALEEERRIAYV 591

Query: 654 GMTRASDQLIICKH 667
           G+TRA   L I   
Sbjct: 592 GITRAKQSLYISYA 605


>gi|293407440|ref|ZP_06651360.1| DNA helicase II [Escherichia coli FVEC1412]
 gi|291425551|gb|EFE98589.1| DNA helicase II [Escherichia coli FVEC1412]
          Length = 722

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +    +I     +   +IL+DE QDT+ 
Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---YILQHYRERFTNILVDEFQDTNN 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 311 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDKGGAL------- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 462

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 463 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 522

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 582

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 583 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 608

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 609 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 651


>gi|150398844|ref|YP_001322611.1| UvrD/REP helicase [Methanococcus vannielii SB]
 gi|150011547|gb|ABR53999.1| UvrD/REP helicase [Methanococcus vannielii SB]
          Length = 1016

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 149/907 (16%), Positives = 299/907 (32%), Gaps = 165/907 (18%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           +  D     ++ ++  +   ++ +  ++         L       YEE K+KN ++D++D
Sbjct: 146 QFYDFLISPEELKNYVLGELEKTDDPELILELDKLHDL-SKFYMAYEEYKRKNDLIDYDD 204

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           ++     LLK   V   I+ ++    ++IL+DE QDT+  Q  +I  LT++         
Sbjct: 205 MVAIACKLLKSNPV---IQKQLQNRFDYILVDEFQDTNYSQLYLINMLTKNGM------- 254

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               L  V D+ Q IY F GA    + + +                I L +++RST +I+
Sbjct: 255 ----LTCVADDDQCIYQFRGAYLTNINQLEEYYP--------DLKKIPLEINYRSTENIV 302

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
            +  ++    E  +  +                               ++ + ++ +  S
Sbjct: 303 NLSQELIKNNEKREKKT----------------------------VKSNKSSEEKVNVVS 334

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
             D   +       A  ++  + N+I             +  KDI +L RK  D    + 
Sbjct: 335 MPDDYSE-------AEWVSNEVQNLIKKG----------LTPKDIFILTRKTADGKKFSD 377

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
             +    +  I       + L D   IKD ++    I    +       + +      E 
Sbjct: 378 SLK----NRLIPSEYIGNYRLQDFPVIKDTLSYISAISDPFNSGIDFKKIFT-REGLFEH 432

Query: 452 DIFKICTQRHETET-------------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
           DI KI  +  E                + + + +     +   + + + I+EL+   +  
Sbjct: 433 DIQKINKKAKELTYSNPEISGDGIFYVLEKNLSELNLENLEIAKSIFENINELLIYKKNH 492

Query: 499 SPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            P D    +L  K    +           + I++L+  ++     E    +  +E+   L
Sbjct: 493 LPSDTLKHLLIEKTDIYKLEIHQNTLNSRKNIELLNSLISLVEEFESVRKTEFEEISEYL 552

Query: 555 E-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++      ++ V+IMT+H +KG E+  VF+ D   +    ++ KK   +P   
Sbjct: 553 NILSDFEVEPEDFLENDTVKIMTIHQSKGKEAKAVFVCDVSERHLPLQYRKKEFTVPLDL 612

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                             +       KK   EE  RLLYV MTRA D+L +      S  
Sbjct: 613 QKG---------------IKKDNFDEKKLYLEEELRLLYVAMTRAKDKLYLTYPKIFSGN 657

Query: 674 KKSNQRTWY---------DMVYDSFHNDERVKKIKLTNSINK--DEWIAYEWSTHHPENT 722
           KK ++ + +         D V            + + + INK   E+          +  
Sbjct: 658 KKESKPSLFLDGISYLQNDKVNFFETEKFEKPVMSVESPINKKISEYERLVIKYSVQKQY 717

Query: 723 PLEREETIK------------------------QLMDEQKIPKKLFSPIKNDINEPYILN 758
               E  I                          + D  ++ + L   +   +++    +
Sbjct: 718 KKAIESIITLVKINELEKSGNLSNFDLNDFLKIDIPDISELSELLTVKLPPLVDKSMKFS 777

Query: 759 PSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITS 807
            S I       L                    G  +HK+ + +       E        S
Sbjct: 778 ASKIKQYIGCPLNFKYNYVLNIPTPKKAHLTVGTDVHKIFEDLGILKNKGEAIDLELAKS 837

Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV-SVSGKINCPKKDIIISG 866
             ++N K +            ++ L+           + +++ +   K N        +G
Sbjct: 838 MLSENLKEFSFNSKTEFEEEYSKSLKMIEYWFDFESKNKNKILATEEKFNLDLGGFTFTG 897

Query: 867 RIDQISIS-QQNIFIFEYKTHH-----HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
            ID+I ++      I +YKT         P+  E +      Q+++Y   + + Y    +
Sbjct: 898 IIDRIDVTPDGEYIILDYKTGKKSSVLTKPKMAEDV------QMALYAMAVFEKYGKYPV 951

Query: 921 VCLLIYV 927
               +YV
Sbjct: 952 KMGQLYV 958


>gi|171920710|ref|ZP_02695904.2| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|185179010|ref|ZP_02964760.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024022|ref|ZP_02996781.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518328|ref|ZP_03003841.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188524317|ref|ZP_03004355.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195867968|ref|ZP_03079965.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273561|ref|ZP_03206097.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209554036|ref|YP_002284945.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225550706|ref|ZP_03771655.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551585|ref|ZP_03772531.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903451|gb|EDT49740.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|184209099|gb|EDU06142.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188019050|gb|EDU57090.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188998009|gb|EDU67106.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660157|gb|EDX53537.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660364|gb|EDX53624.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198250081|gb|EDY74861.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|209541537|gb|ACI59766.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|225379400|gb|EEH01765.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225379860|gb|EEH02222.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 743

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 104/615 (16%), Positives = 186/615 (30%), Gaps = 116/615 (18%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
             +   +L      Q    +K+ I ++  K    +K K     D   +        ++  
Sbjct: 113 DADDQEVLLKEIFDQLSIEKKSPIIKKTIKMISKVKNKFFDQSDIMNE--KNRKYLEIVD 170

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              A       +   Y +   K   +DF+DLI  T  L  +      +  K   + ++IL
Sbjct: 171 RNDA--QKLADIYTIYCDRCFKLNYVDFDDLINLTYKLFAEFPE---VLEKWQNKFDYIL 225

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ IQ+++I  L              + LF VGD  Q IYSF GAE   +    
Sbjct: 226 VDEFQDTNKIQYDLISLLAA----------KHQNLFVVGDPDQMIYSFRGAEQWIINNFN 275

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +  +           +  L  ++RST  IL   +++     N+   +  +  T  H    
Sbjct: 276 QNFKN--------TKVTILKTNYRSTQPILDTANRLIDANNNSYKKNLTAFNTNDHN--- 324

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                                      +    + + +       A  IA T+  ++   T
Sbjct: 325 ------------------------IPIYLRGQNQIDE-------ANWIARTVKELLEEGT 353

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                      A  I +L R    +  I            I           +   IKD+
Sbjct: 354 P----------ANQIAILFRSNHYSRTIEQSM----MRESIPYTILGSKKFYERAEIKDM 399

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG--- 477
           +A  + + +  D+LSF+ ++ +P           +     +    ++E + +        
Sbjct: 400 IAYLKVV-NDLDELSFLRIINTPRRAIGPTTFEHVKHYAINNNLFLFEALAEVEKNHLIN 458

Query: 478 ---ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFL 533
                   + +  I E+    +    H+   LI          + +    + ID + E  
Sbjct: 459 NTQKKNILNFVNLIKEIRDEMEDLKLHEVLELIYKKVNYEAYLLENERAEDKIDNVSELK 518

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                           +   L      + +    +   V +MTVH +KGLE   VF+V  
Sbjct: 519 RAMKMYVDRHPDD--TINDYLNSIALYLNKDSKDSKENVLLMTVHNSKGLEYENVFVVGM 576

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                          +                                   EE  R+ YV
Sbjct: 577 NEGHLPSDRAIDDDPI--------------------------------KGVEEERRIAYV 604

Query: 654 GMTRASDQLIICKHS 668
            +TRA   L I    
Sbjct: 605 ALTRAKKNLYISSAC 619


>gi|325473361|gb|EGC76556.1| ATP-dependent DNA helicase PcrA [Treponema denticola F0402]
          Length = 674

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/592 (15%), Positives = 184/592 (31%), Gaps = 120/592 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K L   Y+E  K    +DF+DLI+    + K+      +  +  +   +I++DE QDTS 
Sbjct: 161 KALYKEYQEGLKLYNAVDFDDLIMLPIKIFKEHPE---VLAEYRERYRYIMVDEFQDTST 217

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  ++ + +            + +  VGD+ QSIYS+ GA  + +   ++   +    
Sbjct: 218 QQYNFMKLIAD------------KNICVVGDDDQSIYSWRGASFENIRNFEKDFPEMIE- 264

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I+L  ++RST  IL   + V S   N +  +  S                +++
Sbjct: 265 -------IKLEQNYRSTGTILAAANGVISHNVNRKVKALWSE---------KDSGRPIEI 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           +                             + +  A  I+  I ++   +          
Sbjct: 309 FIP--------------------------ENEAAEADFISDMILSLKQRE---------G 333

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +  D  VL+R    +  +         +  I    +          IKDL++  R + +
Sbjct: 334 FKYSDFGVLIRANSLSRPLEESF----LEVNIPYRMSGGTSFFQRKEIKDLISYLRVVAN 389

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK---------F 481
            +DD++ + ++ +P     +  +  +     E         +       +          
Sbjct: 390 PDDDVNLLRIINTPRRGIGKKTLETLSALATENSCSMRTAIRLLLENPPEDMRGKSIEDL 449

Query: 482 QHVIKYIHELI-HIAQFCSPHDFFTLILGAKKGRQQFISRFG------NEVIDVLDEFLN 534
           +   + I      +            +L      +  I+ +          +  ++ FL+
Sbjct: 450 KEFAELISAHRTQLLSGKGLAQKVRKLLDDIAYNEYLIAEYQKSEKAAQFKMMNIESFLH 509

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E N  +    L   L +     +        EV IMT+H++KGLE PVVF+    
Sbjct: 510 SMDDWENNPDNWDASLYDYLNRITLLTRDDTEEEKGEVNIMTIHSSKGLEFPVVFIAGAE 569

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +  H                                            EE  RL YV 
Sbjct: 570 DGLIPHARSV---------------------------------EENDGDIEEERRLFYVA 596

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +TRA  +L I        +    +      + +   +     +        +
Sbjct: 597 ITRAQQKLFITSCRQRRKQGGITECAPSPFLDEIPADLVEYHEPDAQAEEER 648


>gi|256831910|ref|YP_003160637.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603]
 gi|256685441|gb|ACV08334.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603]
          Length = 833

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 119/790 (15%), Positives = 232/790 (29%), Gaps = 137/790 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + + P        ++ + S  +          A  L+         +   
Sbjct: 108 AAAEMRERVIQIVGPSAQRMW--VSTFHSTCVRI--LRAHASALGLKSTFSIYDSADSQR 163

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL       +  P K    + + ++   LK++L    D             +   +    
Sbjct: 164 LLGLVVRELELDP-KRFTPKGVAQRISGLKDELMTPADHL-----------VRAGSNDYE 211

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y++       LDF+D+I+ T DLL++      +R    +   HIL+DE QD
Sbjct: 212 VMIGRIFERYQQRLATAHALDFDDIIVRTVDLLRQFPE---VRDHYQRRFRHILVDEYQD 268

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +IR L      G         L  VGD  QSIY+F GA  + +L  ++   + 
Sbjct: 269 TNHAQYALIRELVGTDHDGLTASE----LTVVGDSDQSIYAFRGASIRNILEFEQDYPQ- 323

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL+  + V S   + +                      
Sbjct: 324 -------ARTILLEQNYRSTQTILSAANAVISRNNDRRPKK------------------- 357

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +   P    +           +    AR IA  I +++          
Sbjct: 358 --LW------TAAGDGPAIVGYV--------GDTEHDEARWIAREIDSLMDK-------- 393

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              ++  D+ V  R    +  +  +         +           +   IKD++A    
Sbjct: 394 -HGVRPGDVAVFYRTNNQSRALEEVL----IRVGLPYKVVGGTRFYERKEIKDVLAYLHA 448

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN------CGISK 480
           + + +DD++   ++  P     +     I         +  + +++              
Sbjct: 449 VNNSDDDVNVRRIINVPKRGLGDRSEAVIAQFAAAHDISFADALRRIDTIPGLTARSTKP 508

Query: 481 FQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
            +   + +            P    + IL      +        +    ++ L E     
Sbjct: 509 ARAFAQLLDTWQQNVDQGVGPAGLISAILDDTGYLELLRDSEDPQDQSRVENLAELHAVA 568

Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSA----------NHNEVRIMTVHTAKGLES 585
           +  E+      L   +  +           S           +   + +MT+HTAKGLE 
Sbjct: 569 MEYEKEDPEGGLGGFLERVSLVADADSVPSSDDAGHEDTPVVDPGVITLMTLHTAKGLEF 628

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PV FL       F H                                  +   L  S   
Sbjct: 629 PVAFLTGLEDGTFPH----------------------------------MRALLDDSELS 654

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           E  RL YVG+TRA ++L + + +  S     +    + +     +   + R +       
Sbjct: 655 EERRLAYVGVTRARERLYLTRATTRSAWGSAQQFPPSRFLDDIPAELIEWRRQYSTTEVL 714

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
           +N          +        + ++    +   +      +           +  P   D
Sbjct: 715 MNSGSRSGSSGYSGDRSRALRDDDDFGAPIGSGRSQGLPAWKKSAAAPPPARVGAPQAKD 774

Query: 764 TKGKTNLESL 773
                 L   
Sbjct: 775 EADIPVLRQG 784


>gi|188582350|ref|YP_001925795.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179345848|gb|ACB81260.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 1047

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 158/901 (17%), Positives = 286/901 (31%), Gaps = 97/901 (10%)

Query: 1    LKNR--FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
            L+ R           +              S ++   +   E    TI+++   +  A  
Sbjct: 195  LRRRPTLAAPPVSPLDGCLTTFRQAAADFASFMDGAAAA--EPETVTIVERLAEMATAVA 252

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQE---------------------INKKSPDLK 97
                    + L    LT +  P  ++ T+                             L 
Sbjct: 253  NGPDPATPAGLVR-LLTARPHP--DLCTKAGAFASYRKKGKWAAAAKEAGLSKADGDRLN 309

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +  +                    +  A +  A+ +   Y + K+ +  LDF+DLI    
Sbjct: 310  DAAETHYTACCDAWVALVQAAAGHALAALIDEARPILQRYRDHKRASAQLDFDDLIFAAR 369

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT----HSSP 213
            DLL+  D    +R  + Q   H+L+DE QDT  +Q E+   L  +   G +        P
Sbjct: 370  DLLRDHDA---VRRALGQRFAHVLVDEFQDTDPLQTEIFWRLCGEPVDGDDDWIWFQIRP 426

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              LF VGD KQ+IY F GA+    ++ +   + +   +     ++ +  +FRS A ILT 
Sbjct: 427  GALFLVGDPKQAIYRFRGADVGAYVQARDAFRAQNPGS-----LLSISTNFRSCASILTF 481

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            V++ F    +A                  GQ G   L      +          +     
Sbjct: 482  VNERFEAVLSA-----------------DGQPGFTALDPFHDDRGGLCVAALDIAVADEN 524

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITF 391
                 E      A  IA   + +I +  I    +G +R  Q  DI +L     +      
Sbjct: 525  GKASAERQRDAEADAIAELCARLIESHPIVDRRSGSERPCQPGDIALLAPTGAELWRYEE 584

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                      I V       L     I+DL+AL R +  + D L+   +L+ PL   +E+
Sbjct: 585  ALE----RRGIPVATQAGKGLFRRQEIQDLIALTRVLADRRDTLALGALLRGPLVGLTEE 640

Query: 452  DIFKICTQRHETETVYEYIQKFANCGISKF------QHVIKYIHELIHIAQFCSPHDFFT 505
            ++  I      +E   + I +               + VI+ +  L       +PH+  +
Sbjct: 641  ELLDIIWGLPRSEERPDRIPRLDLSIDPAVIAHPLAREVIERLQSLSRRGNSTTPHELLS 700

Query: 506  LILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSL-QELISELEQYPPTI 561
              +   + R   + R   +       +D +L+ +         +  + + +        +
Sbjct: 701  HAVDVMRVRPLLLERHRGQAERALANIDLYLSLSTGYAVRGLRAFAEAMTAAWSDEARAV 760

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +    A    V + T+H AKGLE P+V  V+T + V +  +         + D      +
Sbjct: 761  EGRPDAQEEAVALFTMHAAKGLEWPIVIPVNTMTGVMAPDNA--------VVDRQTETFF 812

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
             P             +  K     E  RL YV  TRA + L++        +   ++  W
Sbjct: 813  CPVLGIPPEGYETAREAEKDELDRERIRLWYVAATRARELLVL-----PRLDTTPSKSAW 867

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              +V  S      +   +L   +           T        E     +  +      +
Sbjct: 868  IGLVDLSLAELPGLDVSQLPAGLTATGAGVGNTQTRASFAAEAETIAAAQTRLTWLAPSR 927

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
               +       E   L   + D      LE+         RGLI+HKL++ + T    + 
Sbjct: 928  DENAAGTVLREEEAALWTGSAD-DQPPELEAAAFVQGGRERGLILHKLMEEVLTGETLEA 986

Query: 802  KNFITSYCTKNAKLWPAKEYK---------NLLLSITRLLENPMMTTAMSCDSYSEVSVS 852
            +  +T       +                  L   + R L  P +         +E  V 
Sbjct: 987  EAALTERAADLIRALGRSSVADPATGLSAQELAACVARTLALPDIAAL-RPGLLAEFPVY 1045

Query: 853  G 853
             
Sbjct: 1046 A 1046


>gi|220911705|ref|YP_002487014.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6]
 gi|219858583|gb|ACL38925.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6]
          Length = 837

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 115/776 (14%), Positives = 225/776 (28%), Gaps = 142/776 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   +         S  +      +      +      L+         +  
Sbjct: 126 AAAEMRERIEALVGGRAKIMWISTFHSSCVRILRQEAANV-----GLKSNFSIYDAADSL 180

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P+K    + I  K   LK +L           D  +           
Sbjct: 181 RLVTQVSKALDLDPKK-FAPKAIQHKISALKNEL----------IDADSYASDANYNDPF 229

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  ++   +DF+DLI  T  + +       +     +   H+L+DE Q
Sbjct: 230 EQAVAEVYKGYTQRLRQANAMDFDDLIAETVYMFRAFPA---LAESYRRRFRHVLVDEYQ 286

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R +  +             L  VGD  QSIY+F GA+ + ++  ++   +
Sbjct: 287 DTNHAQYALVREIVGEG-------PGASELTVVGDSDQSIYAFRGADIRNIVEFEKDYPE 339

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I+L  ++RST +IL+  + V S   N       +     H+       G
Sbjct: 340 --------ARTIKLEQNYRSTQNILSAANSVISRNPNRPEKRLWTAEGEGHKII-----G 386

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                                +    A+ IA  I  +   D      
Sbjct: 387 YV------------------------------GENEHDEAQFIAKEIDRLQDED------ 410

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               ++  D+ +  R    +  I  +         +           +   IKD +A  R
Sbjct: 411 ---NLRPGDVAIFYRTNAQSRSIEDVL----VRVGLPYKVVGGTRFYERKEIKDALAYLR 463

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQH-- 483
            +++ +DD++   +L  P     +     +      E  +     ++         +   
Sbjct: 464 VLVNPDDDVNLRRVLNEPKRGIGDRAEGAVAALASRERISFMAAARRAEQAPAMATRSVN 523

Query: 484 ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                +K + +L  +A           +L          S    +    ++ L E +   
Sbjct: 524 AVLGFVKLLDDLAEVAAGSGAAAALEAVLEQTGYLAGLRSSTDPQDESRVENLAELVAVV 583

Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSANHN------------EVRIMTVHTAKGL 583
              EQ +   SL   + ++       +   +   +             V +MT+HTAKGL
Sbjct: 584 REYEQENPEGSLGAFLEQVSLVADADQIPDAPGADIDAAVAEAKRLGVVTLMTLHTAKGL 643

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL      +F H+                                          
Sbjct: 644 EFPVVFLTGMEHGLFPHQ----------------------------------RSATDPKE 669

Query: 644 QEEYNRLLYVGMTRASDQLIIC--KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             E  RL YVG+TRA  +L +   +  N   + + N  + +     +   + + +     
Sbjct: 670 LAEERRLAYVGLTRARKRLYVTRSEVRNMWGQSQYNPASQFLEEIPAELLEWKREGTSRQ 729

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
            +       +  +S                       +P  +         E   +
Sbjct: 730 AAWGGGSISSGRYSGSFWGAGTSRGAAADPSAGFNADVPAAIARNRVQPQKEIIAV 785


>gi|157144441|ref|YP_001451760.1| DNA-dependent helicase II [Citrobacter koseri ATCC BAA-895]
 gi|157081646|gb|ABV11324.1| hypothetical protein CKO_00155 [Citrobacter koseri ATCC BAA-895]
          Length = 720

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 102/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R  +        
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLKDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANTLIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGIDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            I+ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FIELIDALAQETADMPLHVQTDRVIKDSGLRMMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +   +     +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEDCVEEVRLRAT 649


>gi|331655498|ref|ZP_08356491.1| DNA helicase II [Escherichia coli M718]
 gi|331046819|gb|EGI18903.1| DNA helicase II [Escherichia coli M718]
          Length = 722

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 311 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 ---TECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 462

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 463 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 522

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 582

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 583 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 608

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 609 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 651


>gi|218560877|ref|YP_002393790.1| DNA-dependent helicase II [Escherichia coli S88]
 gi|218367646|emb|CAR05431.1| DNA-dependent ATPase I and helicase II [Escherichia coli S88]
          Length = 720

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|293417279|ref|ZP_06659904.1| DNA helicase II [Escherichia coli B185]
 gi|291431047|gb|EFF04042.1| DNA helicase II [Escherichia coli B185]
          Length = 720

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|209921291|ref|YP_002295375.1| DNA-dependent helicase II [Escherichia coli SE11]
 gi|209914550|dbj|BAG79624.1| DNA helicase II [Escherichia coli SE11]
 gi|324016210|gb|EGB85429.1| DNA helicase II [Escherichia coli MS 117-3]
          Length = 720

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|254464957|ref|ZP_05078368.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I]
 gi|206685865|gb|EDZ46347.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I]
          Length = 789

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 104/650 (16%), Positives = 196/650 (30%), Gaps = 117/650 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
             A Y+   ++   +DF DL+++   + +       +  +  +   +I++DE QDT++ Q
Sbjct: 196 FYAQYQTRLRELNAVDFGDLLLHMVTIFQNHPD---VLEQYQRWFRYIMVDEYQDTNVAQ 252

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R L              + +  VGD+ QSIY + GAE   +LR ++          
Sbjct: 253 YLWLRLLAG----------KHKNVCCVGDDDQSIYGWRGAEVGNILRFEKDFP------- 295

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RST  IL     V    +   G                      +LW 
Sbjct: 296 -GAMVVRLEQNYRSTGHILAAAAGVIRGNQGRLGK---------------------ELW- 332

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + ++     ++D   +       AR I   I  M           +  + 
Sbjct: 333 ------TEAGDGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGQAPLG 374

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              + +LVR                    +           + + I+D MA  R ++S +
Sbjct: 375 LDQMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRIVVSPD 430

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVI 485
           DDL+F  ++ +P     +     I    R    ++ E  +      +    G    + + 
Sbjct: 431 DDLAFERIVNTPKRGLGDKAQQTIQGLAREHGVSLVEGARIAVESGQIKGKGGGALRELA 490

Query: 486 KYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
           + I     +A     +  +   +IL        + +    E    ++ L E +      E
Sbjct: 491 EGIARWGRMAGDPDLTHMELAEIILDESGYTAMWQNDKTPEAPGRLENLKELVKALESFE 550

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L   LE     +         +V IMT+H AKGLE P VFL      +F  
Sbjct: 551 N--------LQGFLEHVSLVMDNDKQDADEKVSIMTLHAAKGLEFPAVFLPGWEDGLFPS 602

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                  +        EE  RL YVG+TRA  
Sbjct: 603 QRS--------------------------------MDESGLKGLEEERRLAYVGITRAEQ 630

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
              I    N     +   +     + +       V                         
Sbjct: 631 ICTISFAGNRRVFGQWQSQLPSRFIDELPEEHVEVLTPPGLYGGGYGAAAPGAAMGAGQV 690

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
            + +E +       +     +      +  +++P       ID    ++ 
Sbjct: 691 RSSIEEKMAQADGYNSPGWKRMQARAGQRGLSQPKESKHQVIDLTATSSF 740


>gi|121595626|ref|YP_987522.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42]
 gi|120607706|gb|ABM43446.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42]
          Length = 816

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/617 (16%), Positives = 199/617 (32%), Gaps = 142/617 (23%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K+        ++     +   +  A       L   YEE  ++  V+DF +L++ + +LL
Sbjct: 167 KQLAYFIAGCKEEGMRPRDVPAHDADTRKKVELYQLYEEQCQREGVVDFGELMLRSFELL 226

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  D    +R    +   HIL+DE QDT+ +Q+  ++ +  D         +  ++ AVG
Sbjct: 227 RDND---PVRAHYQRRFAHILVDEFQDTNKLQYAWLKQMAGDVV--DGRLHTQGSVLAVG 281

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +    R    +          I+L  ++RS ++IL   + + S 
Sbjct: 282 DDDQSIYAFRGARVGNMQDFVREFDVQ--------HQIKLEQNYRSYSNILDSANALISH 333

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +  +T          G    V+++                          + +
Sbjct: 334 NSRRLGKNLRTTQ---------GPGEPVRIY--------------------------EAN 358

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           S    A+ +   I  ++    +           K+I VL R    + +I         + 
Sbjct: 359 SDLAEAQWMVDEIKQLVRDGEMP---------RKEIAVLYRSNAQSRVIESAL----FNA 405

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            +           +   IK  +A  R + +  DD SF+ ++  P        +  +    
Sbjct: 406 SVPYRVYGGLRFFERAEIKHALAYLRLLENPHDDTSFLRVVNFPPRGIGARTLEVLQDAA 465

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R    ++++ +        +     +  +  L    Q  +       +L +    + +  
Sbjct: 466 RSSGCSLHDAVSAVPGKAGTNLGAFVALVQVLREQTQGQNLRGIIGQVLESSGLLEHYRH 525

Query: 520 RF-GNEVIDVLDEFLNFTLRN--------------------------------------- 539
              G + ++ LDE +N                                            
Sbjct: 526 EKEGADRLENLDELINAAESFVTQEGFGRDAVALPLDEHGNALTQSPASQGLDPDAPMLN 585

Query: 540 -----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                + ++  +L  L + L             A  + V++MTVH +KGLE   VF+   
Sbjct: 586 APGNVDADTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDCVFIGGM 645

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F H++                                      +   EE  RL+YV
Sbjct: 646 EEGLFPHENS----------------------------------MSDRDGLEEERRLMYV 671

Query: 654 GMTRASDQLIICKHSNT 670
            +TRA  +L +      
Sbjct: 672 AITRARKRLYLSHSQTR 688


>gi|301066102|ref|YP_003788125.1| superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang]
 gi|300438509|gb|ADK18275.1| Superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang]
          Length = 751

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 121/699 (17%), Positives = 214/699 (30%), Gaps = 133/699 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +A       E+ +L+          P K    + I       K +L + Q          
Sbjct: 110 RAFTIADPAEQLTLVKHILADFNLDP-KRYDPKSILGAISSAKNELVEPQ---------- 158

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            TY   ++      +   + A Y++  + +  LDF+DLI+ T  L +K            
Sbjct: 159 -TYANEQANSPFTKVVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKD---KETLAFYQ 214

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++  +I +DE QDT+  Q++++  L E +            L  VGD  QSIY + GA  
Sbjct: 215 RKFRYIHVDEYQDTNEAQYQLVHMLAEGY----------HNLCVVGDADQSIYGWRGANM 264

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + +L  K+   K          +I L  ++RST  IL+  + V    +N Q  +      
Sbjct: 265 QNILDFKKDYPK--------AQVILLEQNYRSTKTILSAANDVIQNNQNRQAKT------ 310

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                          LW       +++   +   + +      +   A  + RRI   I+
Sbjct: 311 ---------------LW------TENREGDKITYYRA----QSETDEAIFVIRRIEAEIA 345

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           +                +  D  +L R    +  I            I           D
Sbjct: 346 DNHR-------------KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYD 388

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK- 472
              I+D +A  R +++ EDD+SF  ++  P        + K+         ++ E     
Sbjct: 389 RKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRGIGNTSVEKLEAFANEHDWSLLEAAANA 448

Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-- 526
                A     +     K I EL    +  +  +    IL          +    E    
Sbjct: 449 ELSPIAGKARGQLAKFGKMIQELGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTR 508

Query: 527 -DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            + L+E L+ T         E        + ++EL             +  EV +MT+H 
Sbjct: 509 IENLEELLSVTQGFDSRYQPENEDSDIFVDFLAELALLSDQD--DVEEDAQEVTLMTLHA 566

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFLV     +F                                         
Sbjct: 567 AKGLEFPVVFLVGMEEGLFPLSRASMDESELEEERRL----------------------- 603

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                       YVG+TRA  +L +          +         + +   +   V    
Sbjct: 604 -----------AYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPDLLEVIGTT 652

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
              S +       + +   P +    ++      +    
Sbjct: 653 QPKS-DIPFINRTDRAFSSPYSRHAAQKTATPVTVQAAP 690


>gi|298369602|ref|ZP_06980919.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282159|gb|EFI23647.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314]
          Length = 735

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 98/549 (17%), Positives = 185/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------IFAVGDDDQSIYRFRGAHVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANTVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           A+ I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------AQFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVAAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++  L +
Sbjct: 467 QVGQMPLPEIIVGILKDSGLTEHYRAQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPD 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDAPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|325130964|gb|EGC53691.1| DNA helicase II [Neisseria meningitidis OX99.30304]
          Length = 735

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFIVDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                S  +    IL      + + ++ G   + +D LDE +N  +    E +++  L E
Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +         V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGVGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|82779008|ref|YP_405357.1| DNA-dependent helicase II [Shigella dysenteriae Sd197]
 gi|309784529|ref|ZP_07679167.1| DNA helicase II [Shigella dysenteriae 1617]
 gi|81243156|gb|ABB63866.1| DNA-dependent ATPase I and helicase II [Shigella dysenteriae Sd197]
 gi|308927635|gb|EFP73104.1| DNA helicase II [Shigella dysenteriae 1617]
          Length = 720

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTCQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|299140726|ref|ZP_07033864.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735]
 gi|298577692|gb|EFI49560.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735]
          Length = 761

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 109/662 (16%), Positives = 206/662 (31%), Gaps = 123/662 (18%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +  +        +      + K +   Y++  +K   +DF+DL++    L K+ D  
Sbjct: 151 LPDLYAQDQAALKRDNHNHQPEIYK-IYQTYQQRCQKANAMDFDDLLVLIWRLFKEHDD- 208

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             IR K  +   ++L+DE QDT+ +Q  ++  LT++           R +  VGD+ QSI
Sbjct: 209 --IRKKYAERFKYVLVDEYQDTNFVQQCIVLQLTQE----------HRRVCVVGDDAQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F GA    +L  ++I  +          + +L  ++RST  I+   + +    +    
Sbjct: 257 YGFRGANIDNILDFQKIYPE--------TKLFKLEQNYRSTQHIVQAANSLIQHNK---- 304

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                   I          G   +   V S  +                          A
Sbjct: 305 ------RQIPKDVFSCNDKGERLILRPVYSDKE-------------------------EA 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +   I  +   +                 +L R    +       R       I    
Sbjct: 334 AVVCRYIKRLKQKE---------DFNYDSYAILYRTNSQSRSFEEEMR----KQSIPYRI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465
                      IKD++A  R + + ED+ +   ++  P     +  + KI    +    +
Sbjct: 381 FGGMSFYQRKEIKDILAYFRMVANPEDEEAIRRIINYPTRGIGDTTVAKIAACAQANDVS 440

Query: 466 VYE-------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            ++       Y     N  ++K +   + I   I  +     +   T I+   K      
Sbjct: 441 FWQIVNSPVKYGLNVTNSTVNKLRSFAELISSFIEKSASTDAYQLGTAIIQESKINADIF 500

Query: 519 SRFGNE---VIDVLDEFLNFTLRN-------EQNSYSSLQELISELEQYPPTIKRAHSAN 568
           S    E     + ++EFL+             Q  Y+ L + + E+             +
Sbjct: 501 SSNDPEALSRQENVEEFLSGLQDFVEGRREEGQEEYTGLTDFLQEVSLLTDVE-SDDDKD 559

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            N+V +MT+H+AKGLE PVVF+V     +F                              
Sbjct: 560 GNKVSLMTIHSAKGLEFPVVFIVGMEENIFPSPMSANNPRELEEERRLL----------- 608

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                                  YV +TRA    I+    N     K         ++D 
Sbjct: 609 -----------------------YVAITRAEKYCILTCAKNRWRFGKLEFGAPSRFLHDI 645

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
             +  R++   LT+ I     I          ++   R   +  ++ +    +   +P+ 
Sbjct: 646 DPSFLRIENDNLTDDILFKNSIPKSAKPTTGIHSSPLRPARVGPIVPKSISKEPSKTPVL 705

Query: 749 ND 750
             
Sbjct: 706 TP 707


>gi|298383180|ref|ZP_06992774.1| DNA helicase II [Escherichia coli FVEC1302]
 gi|298276416|gb|EFI17935.1| DNA helicase II [Escherichia coli FVEC1302]
          Length = 722

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +    +I     +   +IL+DE QDT+ 
Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---YILQHYRERFTNILVDEFQDTNN 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 311 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDKGGAL------- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 462

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 463 FMELIDVLAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 522

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 582

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 583 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 608

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 609 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 651


>gi|51893964|ref|YP_076655.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51857653|dbj|BAD41811.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 825

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 121/787 (15%), Positives = 225/787 (28%), Gaps = 130/787 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + + P               +        +++    +         E   
Sbjct: 107 AAAEMRERVEQLVGPRA---REVWAATFHSTCVRMLRRDIERLGYGRNFVIL--DAEDQQ 161

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +    L +    ++      +     + K  +         +  R    +         
Sbjct: 162 AVIRDCLKRLGLSERQFQPGAVLGTISNAKNAM---------LDPRRFADRAGDYWR--- 209

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                + A Y+E  +    LDF+DL++   +LL++ D    +R    ++  +IL+DE QD
Sbjct: 210 QQVAKVYALYQEQLRSGNALDFDDLLLKAVELLERFDD---VREYYQRKFEYILVDEYQD 266

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q   +  L  +           + L  VGD+ Q IYS+ GA+   +L  +      
Sbjct: 267 TNHVQNRWVFLLAGE----------KQNLAVVGDDDQGIYSWRGADISNILEFEAQFP-- 314

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I+L  ++RST +IL+    V       +            R       G 
Sbjct: 315 ------GCRTIKLEQNYRSTQNILSAAYAVVRHNTGRKEK----------RLWTAAGPGD 358

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                    + D                          A  +A  +  ++          
Sbjct: 359 PVYHFTAADERD-------------------------EAAFVAREVERLVAEGLPDGTR- 392

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  +D  VL R    +  +            I           +   IKD++A  R 
Sbjct: 393 ---LDYQDFAVLYRTHAQSRALEEAM----VRRSIPYGIYGGLRFFERKEIKDVLAYLRI 445

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISK 480
           I +  D +SF   +  P        + K+     + +            +   +     +
Sbjct: 446 IANPADIVSFRRAVGVPKRGIGPATVDKLVDYAEQWQVPVALAALDCSMVPGLSGTYQKR 505

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537
            +     I EL +++  C+       +L      ++  +    E     + + E  +   
Sbjct: 506 MEEFGALIEELTNLSAHCTVGQLIDAVLERTGILEELRADTSLEAAARLENVQELRSMAA 565

Query: 538 RNE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             E         L++L S L      T         N+V +MT+H+AKGLE PVVFLV  
Sbjct: 566 EFEPPAGEELDGLRDLDSFLATVALLTDADQVGEGQNKVTLMTLHSAKGLEFPVVFLVGL 625

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF H                                        +   EE  RL YV
Sbjct: 626 EEGVFPHNRALT----------------------------------DEVQMEEERRLCYV 651

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYD-MVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           GMTRA  +L +    + +   +SN       ++       E V      +   +  W   
Sbjct: 652 GMTRARLRLYLTNAVSRNLWGQSNYNAPSRFLLEIPAELVEEVTPAAGASGPRRSAWDDG 711

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                          +   +    ++     FSP               +    +   E 
Sbjct: 712 AAWEDAGAAVRRPAWDGGARAARRREWEDDDFSPAIGAAGWGRTAQARRLQKALEPPSEE 771

Query: 773 LLSDNQT 779
                  
Sbjct: 772 TPQFQPG 778


>gi|331649638|ref|ZP_08350720.1| DNA helicase II [Escherichia coli M605]
 gi|331675280|ref|ZP_08376031.1| DNA helicase II [Escherichia coli TA280]
 gi|331041508|gb|EGI13656.1| DNA helicase II [Escherichia coli M605]
 gi|331067566|gb|EGI38970.1| DNA helicase II [Escherichia coli TA280]
          Length = 722

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 311 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 462

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 463 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 522

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 582

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 583 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 608

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 609 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 651


>gi|289523886|ref|ZP_06440740.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC
            BAA-1850]
 gi|289502542|gb|EFD23706.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC
            BAA-1850]
          Length = 1191

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 149/898 (16%), Positives = 287/898 (31%), Gaps = 88/898 (9%)

Query: 75   TQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
                  +K + +          LK   +    E    +     ++        L  A  L
Sbjct: 312  KGGGKFKKELESLLSDRFGHKGLKIHRESLSQEVALAKWSKEAHEDRPLRETLLKFASML 371

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
             A +EE KK+  +L F+DL+    D++ K   +        +   +IL+DE QD + +Q 
Sbjct: 372  WALWEEQKKRKNILSFDDLLTKAKDMVNKYPKAV-------ERYKYILVDEFQDINGVQN 424

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +I+++                LF VGD KQSIY F  A+ +         +K       
Sbjct: 425  LLIKNIAA-------GKEGATKLFIVGDLKQSIYRFRHADLRI---FADYIEK---AKSG 471

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                + L  SFR T D+L  ++ +F     +      ++    + +  +   +  +  L 
Sbjct: 472  AGKYVALKESFRMTRDLLERINDLFEYIWKDGISSSLKEIYEPLVYPETLKNENSSGDLK 531

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              + +  + +            +        + LA ++A+                   +
Sbjct: 532  ILLETNAEDEDG----------NKASSAQRKNSLATKLAHRFRMFHEGG----------V 571

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              KD++VLV  R                 +I  V  D+          D  AL   + + 
Sbjct: 572  FWKDMVVLVPTRN----YFDTLEEAFEREEIPAVFVDQRSFFSRSETLDATALLTALNNP 627

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            EDD + + ML SP    S++ + K  +            +          +   + I  L
Sbjct: 628  EDDFALIGMLSSPFLRLSQERVSKALSSIEGEGGEGRIWRYLKTN----LKGTAEKIEYL 683

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
               A    P D    +L          S         +   ++F    E      L    
Sbjct: 684  RRRAILRGPSDVLNYLLEEPLWLLALPSNKRMRAFSNIRYLIHFLRGYEDAFGKDLAGAA 743

Query: 552  SELEQYPP-----TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
              L++                + + VRIMTVH AKGLE PVV +               +
Sbjct: 744  DYLKKTARLNAPYEEATPLGEDEDVVRIMTVHAAKGLEFPVVAVFGLEYARHPRSGSSLV 803

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
              +              + K+  +  +          +EE  RL YV  TRA   LI+C 
Sbjct: 804  PSIFVGTVASSYGDPFDRKKNPPSKAAHDYLEG-LKQEEENLRLFYVACTRAKKHLILCG 862

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
            +    ++   +++T   +   +  N E  ++    + I++ E I  + S    +   L  
Sbjct: 863  NYEIDSQGNPSKKTGLWL--KTVLNWEGARRYADPDDIDEAEIITPKTSDAGSKKNKLSH 920

Query: 727  EETIK-----QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
               I      + + +  + K   +        P+    S               +    +
Sbjct: 921  SRGISLKKLIRPIADSPLDKFSATEYALISWCPHAYRMSCRQGLPLKWELPRSEEYGGPD 980

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLS-----ITRLLEN 834
             G ++H +L       E   + F  +     +  ++ P      L        + R L  
Sbjct: 981  VGSLVHWILSRWDLKEESLVRFFPENDENLERTLRMLPTGLRPILKDKSHWPLLQRWLTA 1040

Query: 835  -------PMMTTAMSC-----DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
                     +   +S       +Y E+    ++        ++G+ID + +      I++
Sbjct: 1041 FAGSFLGSTLRRILSSKDPEYKTYREIPFDFELES---GTRLAGQIDLLYLDDATAHIWD 1097

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
            YK       +       +  QL  Y   +   +P K+L+  L  + E +  ++    +
Sbjct: 1098 YK--ITEDLDEGSFMELYRKQLEFYGYAVNREFPQKNLLMGLYMLRESREILLDAEDI 1153


>gi|170718056|ref|YP_001785094.1| DNA-dependent helicase II [Haemophilus somnus 2336]
 gi|168826185|gb|ACA31556.1| DNA helicase II [Haemophilus somnus 2336]
          Length = 726

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 108/550 (19%), Positives = 187/550 (34%), Gaps = 120/550 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++A  ++ ++DF +L++   +L  K      I     Q   H+LIDE QDT+ IQ
Sbjct: 177 IYKIYQDACDRSGLVDFAELLLRAYELWLKNPH---ILQYYQQRFQHVLIDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  I+ L            S   +  VGD+ QSIY + GA+ + + R  +   K      
Sbjct: 234 YAWIKLLAG----------SQGNVMIVGDDDQSIYGWRGAQIENIHRFLKDFAK------ 277

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               II L  ++RST +IL   +++ S   N  G                       LW 
Sbjct: 278 --VKIIRLEQNYRSTGNILESANRLISNNSNRLGK---------------------DLW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  +          + F+ L +       A  ++  + N +               
Sbjct: 314 ------TAGEKGDPVGIYAAFNELDE-------ALFVSGQVQNWLDNGGKVD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           KI           +   IKD +A  R I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAF----LRAKIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ------HVI 485
           DD +F  ++ +P     E  +  +    R    T+++  Q      +   +        I
Sbjct: 407 DDAAFERVVNTPPRGIGERTLDILRNLTRERQVTLWQATQLAIQENLIPIRSVTVLLRFI 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--- 539
           + I+ L               ++        +    G++    I+ L+E +  T      
Sbjct: 467 ELINSLQQETAEMPLFVQTDFVIKHSGLYDMYKQEKGDKGEVRIENLEELVTATREFIKP 526

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E    S L   ++             +++   V++MT+H+AKGLE P VF+V     +F
Sbjct: 527 DEAEDMSDLVAFLTHTSLEAGEE--QAASHQPCVQMMTLHSAKGLEFPRVFIVGMEEGLF 584

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                      +  EE  RL YVG+TRA
Sbjct: 585 PS----------------------------------FRSGEDLARLEEERRLAYVGITRA 610

Query: 659 SDQLIICKHS 668
             +L +C   
Sbjct: 611 KQKLTLCYAE 620


>gi|89901806|ref|YP_524277.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89346543|gb|ABD70746.1| ATP-dependent DNA helicase UvrD [Rhodoferax ferrireducens T118]
          Length = 814

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 100/588 (17%), Positives = 191/588 (32%), Gaps = 143/588 (24%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+  ++  V+DF +L++ + ++L+  D    IR    +   HILIDE QDT+ +
Sbjct: 192 EIYQLYEDQCQREGVVDFGELMLRSYEVLRDND---PIREHYQRRFRHILIDEFQDTNKL 248

Query: 192 QWEVIRSLTE---DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           Q+  I+ L            + +    + AVGD+ QSIY+F GA    +    R  + + 
Sbjct: 249 QYAWIKMLAGTGAHSTADDASFNPTGCVLAVGDDDQSIYAFRGARVGNMADFVREFKVK- 307

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I+L  +FRS ++IL   +++ S      G +  +           G+   V
Sbjct: 308 -------HQIKLEENFRSGSNILDSANELISYNTKRLGKNLRTAQG-------PGEPVRV 353

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                                        + +S    A+ +   +  ++           
Sbjct: 354 F----------------------------EATSDFAEAQWMVEEMRQLVREG-------- 377

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             ++ K++ VL R    + +I         +  I           +   IK+ +A  R +
Sbjct: 378 --MERKEVAVLYRSNAQSRVIETAL----FNAGIPYKVYGGLRFFERAEIKNALAYLRLL 431

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKY 487
            +  DD SF+  +  P        + ++    R    ++ + +        +     +  
Sbjct: 432 ENPRDDTSFLRAVNFPPRGIGLRSLEQLQDVARASGCSLSDAVSGLGGKAGANIGAFLAG 491

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN------- 539
           I  L          +    +L      Q + + R G + ++ L+E +N            
Sbjct: 492 IDVLREQTSGMKLSEIVERVLEHSGLIQHYKADREGADRVENLEELVNAAESFVSLENFG 551

Query: 540 ---------EQNS---------------------YSSLQE------LISELEQYPPTI-K 562
                    EQ                          L+       L + L         
Sbjct: 552 RDAAALPVDEQGHALTQSPASQGLDLSQPVLDEPVPDLETGETQSPLAAFLSHAALEAGD 611

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
               A  + +++MTVH++KGLE   VF+      +F H++                    
Sbjct: 612 NQAQAGQDAIQLMTVHSSKGLEFDCVFITGIEEGLFPHENS------------------- 652

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                             +   EE  RL+YV +TRA  +L +      
Sbjct: 653 ---------------MSDRDGLEEERRLMYVAITRARKRLYLSHSQTR 685


>gi|331644546|ref|ZP_08345666.1| DNA helicase II [Escherichia coli H736]
 gi|331679923|ref|ZP_08380586.1| DNA helicase II [Escherichia coli H591]
 gi|331036218|gb|EGI08453.1| DNA helicase II [Escherichia coli H736]
 gi|331072470|gb|EGI43802.1| DNA helicase II [Escherichia coli H591]
 gi|332105031|gb|EGJ08377.1| DNA helicase II [Shigella sp. D9]
          Length = 722

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 311 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 462

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 463 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 522

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 582

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 583 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 608

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 609 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 651


>gi|329737718|gb|EGG73961.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus
           epidermidis VCU028]
          Length = 1046

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 110/600 (18%), Positives = 209/600 (34%), Gaps = 47/600 (7%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            K   L  K+K           + +  ++         + + +   +   K+   +LDF 
Sbjct: 307 DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 366

Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           D       +L   D   + I     +    IL+DE QDT+ +Q +++  +       K  
Sbjct: 367 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 LF VGD KQSIY F  A+P   + +          +G     I+L  +FRS  +
Sbjct: 420 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 476

Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           +L+  + +F     E    +S D    +   +        VQL   V +  ++       
Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 529

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385
                       + +   A  I   + ++I    ++    G+ R    KDI++L R    
Sbjct: 530 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                   +    +  I    N +    +   ++ +++  R I +   D+  V +++S +
Sbjct: 581 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
           + F+E+++ +I       +  Y+ I+ +            K    I+ I +  + +Q   
Sbjct: 637 YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696

Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
            +             Q F    G +     L    N  +  E +S+  L + I  +++  
Sbjct: 697 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756

Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              K     N      N VR+MT+H++KGLE P V       +         + +     
Sbjct: 757 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                          +          +K    E  RL+YV +TRA +QLI+         
Sbjct: 817 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 876


>gi|187733738|ref|YP_001882507.1| DNA-dependent helicase II [Shigella boydii CDC 3083-94]
 gi|187430730|gb|ACD10004.1| DNA helicase II [Shigella boydii CDC 3083-94]
 gi|320176055|gb|EFW51124.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella dysenteriae CDC
           74-1112]
          Length = 720

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|328948419|ref|YP_004365756.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
 gi|328448743|gb|AEB14459.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
          Length = 675

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/564 (17%), Positives = 180/564 (31%), Gaps = 122/564 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + L   Y+   K    +DF+DLI+    L K+      +         +I++DE QD
Sbjct: 161 DMYRSLYEEYQSGLKLFNSVDFDDLIVLPIKLFKENPE---VLEAYRNRFRYIMVDEFQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS  Q+E++  L              + +  VGD+ QSIYS+ GA+ + ++  ++     
Sbjct: 218 TSHQQYEMMHLLA------------NKNIAVVGDDDQSIYSWRGADFQNIINFEKDFP-- 263

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I L  ++RST  IL   + V     N +                      
Sbjct: 264 ------DVTEIRLEQNYRSTGTILAAANGVIKHNTNRKDK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +LW           N +     S  +   +       A  IA  I              
Sbjct: 298 -ELW-------SGNGNGKPIELYSPENEAAE-------ADFIAEGI---------LGISV 333

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  VL+R    +  I         +  I    +      +   IKD+++  R 
Sbjct: 334 DEKRNYDDFGVLIRANTQSRAIEEAF----LENNIPYTMSGGTSFFERKEIKDIISYLRV 389

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------ 480
           I + +DD++ + ++ +P     +  I  I         +++E IQ   +    +      
Sbjct: 390 IANHDDDINLLRIINTPRRGIGKAAIESINKVASTMNFSLWESIQAILSSSEEECPVSEK 449

Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVLD 530
               F+     I     +            ++         IS               ++
Sbjct: 450 TKADFEVFSNIIENSKSMLSGKGLAKKVRALVDEINYFDYLISENPKSEKSARFKYMNIE 509

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             +    + E N       L + L +             +  +V +MT+H +KGLE PVV
Sbjct: 510 SLIKSMEQWENNPNYDDTSLYAYLNRITLISRDDMDDEQDKGKVNLMTIHASKGLEFPVV 569

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F+      +  H H                                 ++    +  EE  
Sbjct: 570 FIAGAEEGLMPHAH--------------------------------AVEEGGDAAIEEER 597

Query: 649 RLLYVGMTRASDQLIICKHSNTSN 672
           RL YV +TRA D+L+I   S+   
Sbjct: 598 RLFYVAVTRARDRLLISSCSHRRK 621


>gi|262039829|ref|ZP_06013104.1| exodeoxyribonuclease subunit V beta [Klebsiella pneumoniae subsp.
            rhinoscleromatis ATCC 13884]
 gi|259042829|gb|EEW43825.1| exodeoxyribonuclease subunit V beta [Klebsiella pneumoniae subsp.
            rhinoscleromatis ATCC 13884]
          Length = 1178

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 130/872 (14%), Positives = 282/872 (32%), Gaps = 128/872 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 +      +  + L        +       K++   L F+D++   ++ L+  D  
Sbjct: 309  LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I Q     +IDE QDT   Q+ + R +                L  +GD KQ+I
Sbjct: 368  ETLASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------RQPETALLLIGDPKQAI 419

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    ++ +          G   +   L  ++RS+  ++  V+++FS+ +N   
Sbjct: 420  YAFRGADIFTYMKAR----------GDVAAHYTLDTNWRSSPGMVGSVNRLFSLSDNPFM 469

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
              E     ++  +   G   TV          D+   P    W    D++      + +A
Sbjct: 470  FHEIPFLPVKEAAKNKGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519

Query: 347  RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            +  A  I + +         ++     R +QA DI VLVR R +   +    + L     
Sbjct: 520  QLCATQIRDWLSAGQRGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  + + L  ++L+ L + +L+ E + +    L + +F  +  DI  +     
Sbjct: 578  -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
              + + E   ++        + V+  +  L+              +L  + G ++     
Sbjct: 637  AWDALVEEFSEYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688

Query: 522  GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                   + E L      L +E      L + I+E +    + +    ++ + V+I+T+H
Sbjct: 689  ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V+L          +         ++  D G                  ++ 
Sbjct: 743  KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAVVLDLGQD-------------EASLEL 789

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +     E  RLLYV +TRA     +   +  S+ K  N       +       E +   
Sbjct: 790  AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848

Query: 699  KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
             L   +              E     W         L   E  +++ D+ ++        
Sbjct: 849  GLAARLADFCHGDIALQRPGELDLTPWQAPAATIPRLSARELQRRIADDWRVTSYSGLQQ 908

Query: 748  K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
                   D+     ++ + +    +    +     +    G  +H L + +         
Sbjct: 909  HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHQFPRGAAPGTFLHSLFEELDFTQPVPEG 968

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854
                         + A+    L   +  +L+  +      +    + D   E++      
Sbjct: 969  WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGPDIALNQLAARDKQVEMAFYLPIA 1025

Query: 855  ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
                                    ++  +   ++ G ID +   +   ++ +YK++    
Sbjct: 1026 QLLTAECLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085

Query: 891  QEIEHI---------PYTHIAQLSIYEKILKD 913
                +           + +  Q  +Y   L  
Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117


>gi|225872585|ref|YP_002754040.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
            capsulatum ATCC 51196]
 gi|225792506|gb|ACO32596.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
            capsulatum ATCC 51196]
          Length = 1201

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 147/962 (15%), Positives = 305/962 (31%), Gaps = 90/962 (9%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                + VS++   V  ++       L    TL++ S +   E  +  L +F L      +
Sbjct: 263  AEGGWLVSELMAVVQYALRHRTDGELAALATLRELSASSSPEH-WKSLCAFLLKVDGEWR 321

Query: 82   KNIITQEI---------NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF----------KS 122
            K+   ++           K+     +KL  S      +       +            ++
Sbjct: 322  KSFNVKDGIPPASKGPEAKQWKARLDKLMDSCRRTPGLLAAMQQIQTLPGVHYEDAQWET 381

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                    +   A       +   +DF ++     ++L + +       +  +++ HIL+
Sbjct: 382  LRHLFVALRRALAELRVVFAEYNQVDFLEISRAALEVLGQSESG----MRWSEQLRHILV 437

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDTS  Q +++ SL E +          RT F VGD  QSIY F  AE +   R + 
Sbjct: 438  DEFQDTSRQQHQLLESLVEHWM-----PEDGRTFFLVGDPMQSIYLFRQAEVELFERVRE 492

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                           ++L ++FRS A +   ++ VF                    ++  
Sbjct: 493  Q----GLGESLTAETLKLRVNFRSHARLTEPLNDVFE---------------PVFAATAG 533

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI--AYTISNMIGTD 360
                 V+      +  +     +               +    A R+  A T++ +I   
Sbjct: 534  AAGARVEFEASSAAVEEVATIYEPPLQVHAQLCSTDADAEQKRALRLTEAETVAEIIEQH 593

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                   +   +   + VLVR R     I    R       I+    +   L     + D
Sbjct: 594  AERIAAARAAGEEYRVAVLVRNRSHLAWIVPALR----RRGIAFRAVEIESLAARQEMLD 649

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI----CTQRHETETVYEYIQKFANC 476
            LMAL R ++   D ++++ +L++P    S +++ ++      +      +    Q  A  
Sbjct: 650  LMALVRALVHPMDRIAWLSLLRAPWCGLSLEELHRLAGGDDAESSRHPMLELMQQNLARL 709

Query: 477  GISKFQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFL 533
            G      V + +  +    A    P +  +     ++           E    +  + F 
Sbjct: 710  GEEAQARVRRVLAVMERAAAARTRPGETASFSAWVERTWHALGGPLCLEGAERENAEVFF 769

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            +       +    L    S+  +          +    V+IMT+H AKGL   VV +   
Sbjct: 770  SLLDEVSPDGAELLTREFSQKLERLFAQPDPAVSERCGVQIMTMHKAKGLGFDVVIVPGL 829

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPG-----IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                   K      +     +         PI    S +++ + + + K  ++   EE  
Sbjct: 830  ERGSGREKQPLVTSLQRPNPETGKDVFFVAPIGAKGSGTKDPLYAWVQKQKQQRYGEERK 889

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            RL YV  TRA  +L +   +    EK   + +   ++  ++   E   ++ +  +  +  
Sbjct: 890  RLFYVACTRARQELHLIGTATY-GEKGLRKPSAGSLLATAWPALEGAFEMAMPKAETERT 948

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                E+    P    LE            +          ++  +  +   +      +T
Sbjct: 949  GEVIEFPAARPVPGVLEEIAAAAASGTRVRRLPLSAEWTLDEGKDARMEARALQSPGRET 1008

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI----TSYCTKNAKLWPAKEYKNL 824
                          G ++H +L+ +       R +                   ++ +  
Sbjct: 1009 CFRRPEGSRLARAVGQVLHTMLERMGAEIAAGRWDAAGFEVKVLRLLGDHALIQEQVREA 1068

Query: 825  LLSITRLLE----NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI------- 873
            +  + R+LE    +      +      E   S         ++ + R D++         
Sbjct: 1069 VREVLRMLEQCAADEEARWILGEHEGGESEPSWT-GRGPDGVLRTLRADRVFQAGARPLE 1127

Query: 874  -SQQNIFIFEYKTHHHVPQEIEH-----IPYTHIAQLSIYEKILKDSYP-NKSLVCLLIY 926
             S   ++I +YKT   +  E            +  QL  Y ++L+ +   N  +   L Y
Sbjct: 1128 ASDGYLWIVDYKTSTPMGGESAEDFLRRERSVYAPQLQAYAQVLRTARGTNLPVRLALYY 1187

Query: 927  VS 928
              
Sbjct: 1188 PR 1189


>gi|218707447|ref|YP_002414966.1| DNA-dependent helicase II [Escherichia coli UMN026]
 gi|331665463|ref|ZP_08366362.1| DNA helicase II [Escherichia coli TA143]
 gi|218434544|emb|CAR15471.1| DNA-dependent ATPase I and helicase II [Escherichia coli UMN026]
 gi|331057361|gb|EGI29350.1| DNA helicase II [Escherichia coli TA143]
          Length = 720

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +    +I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---YILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDKGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|91784462|ref|YP_559668.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400]
 gi|91688416|gb|ABE31616.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400]
          Length = 783

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 122/809 (15%), Positives = 231/809 (28%), Gaps = 171/809 (21%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W + +   S                ++ +   L            
Sbjct: 28  GAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAAREMMSRLSALLPIDTRGMWIGT 87

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F  L +  L             + + T +       L + L         K  Q      
Sbjct: 88  FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++    K   +T         L   Y++  ++  V+DF +L++   +LL        +R
Sbjct: 148 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L  +            ++FAVGD+ QSIY+F 
Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKLLAGE----------ANSIFAVGDDDQSIYAFR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +   +     R         +I+L  ++RS   IL   +++ +      G +  
Sbjct: 255 GANVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + ++ S  A  I 
Sbjct: 307 TD---------AGHGEPVRVY--------------------------ESATDSQEAGWIV 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +I T T             +I +L R    +  I         +  I+       
Sbjct: 332 EEIKALISTGT----------SRSEIAILYRSNAQSRTIEHTL----VNAGIAYRVYGGL 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   
Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARQYNCSMAAA 437

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
           I   A    S        I ++    Q  S  +    ++ A    + + + R G + ++ 
Sbjct: 438 IPYVAGKAGSSLAGFANLIGKMRAETQQMSLPETVEYVVRASGLSEFYQNEREGQDRLEN 497

Query: 529 LDEFLNFTLRNEQNS--------------------------------------------- 543
           L E +N                                                      
Sbjct: 498 LQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATDDPNTIVFDAPGIADPAQ 557

Query: 544 -YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              ++  L   L             A    V++MTVH AKGLE   VF+      +F H+
Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                    ++    EE  RL+YV +TRA ++
Sbjct: 618 NS----------------------------------AMESDGLEEERRLMYVAITRAKER 643

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +    +     ++                +   K           W     +  +  +
Sbjct: 644 LYLSFAQSRMLHGQTRYNIRS---RFFDELPQETLKWLTPKIEPGARWGGRSDNAGYGRD 700

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKND 750
                  T         +P         +
Sbjct: 701 WFARPGYTGAASSTPAPLPAFANEQRAAE 729


>gi|157163290|ref|YP_001460608.1| DNA-dependent helicase II [Escherichia coli HS]
 gi|170022164|ref|YP_001727118.1| DNA-dependent helicase II [Escherichia coli ATCC 8739]
 gi|188494883|ref|ZP_03002153.1| DNA helicase II [Escherichia coli 53638]
 gi|193067953|ref|ZP_03048918.1| DNA helicase II [Escherichia coli E110019]
 gi|218556376|ref|YP_002389290.1| DNA-dependent helicase II [Escherichia coli IAI1]
 gi|260857781|ref|YP_003231672.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O26:H11 str. 11368]
 gi|260870538|ref|YP_003236940.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O111:H- str. 11128]
 gi|157068970|gb|ABV08225.1| DNA helicase II [Escherichia coli HS]
 gi|169757092|gb|ACA79791.1| DNA helicase II [Escherichia coli ATCC 8739]
 gi|188490082|gb|EDU65185.1| DNA helicase II [Escherichia coli 53638]
 gi|192958573|gb|EDV89011.1| DNA helicase II [Escherichia coli E110019]
 gi|218363145|emb|CAR00786.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI1]
 gi|257756430|dbj|BAI27932.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O26:H11 str. 11368]
 gi|257766894|dbj|BAI38389.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O111:H- str. 11128]
 gi|323155219|gb|EFZ41403.1| DNA helicase II [Escherichia coli EPECa14]
 gi|323173428|gb|EFZ59057.1| DNA helicase II [Escherichia coli LT-68]
 gi|323177826|gb|EFZ63410.1| DNA helicase II [Escherichia coli 1180]
          Length = 720

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|226356134|ref|YP_002785874.1| DNA helicase [Deinococcus deserti VCD115]
 gi|226318124|gb|ACO46120.1| putative DNA helicase UvrD [Deinococcus deserti VCD115]
          Length = 744

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 105/608 (17%), Positives = 186/608 (30%), Gaps = 117/608 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A      YE  K+    +DF DLI  T  L         +   +      I +DE QD
Sbjct: 178 EVAAEAYRRYEARKRSQNAIDFGDLITETVRLF---HEVPAVLNAVQNRARFIHVDEYQD 234

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+ R L           S  R L  VGD  QSIY F GA+ + +L  ++     
Sbjct: 235 TNKAQYELTRLLA----------SRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYP-- 282

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +  L  ++RS+A +L + +K+          +        H          
Sbjct: 283 ------DAKVYMLEHNYRSSARVLNLANKLIENNTERLDKTLKPVKEEGH---------- 326

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                +    D   +          +A  ++ M G         
Sbjct: 327 ------------------PVMFHRAMDHRGEG-------EFVAEWLTRMRGEGR------ 355

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D+ +L R    + +I    R      +I           D   I+D++A  R 
Sbjct: 356 ----KFADMAILYRTNAQSRVIEESLR----RVQIPAKIVGGVGFYDRREIRDILAYARL 407

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI-----QKFANCGISKF 481
            ++  DD++   ++  P     +  + K+    R    ++         +   + G  K 
Sbjct: 408 AINPSDDVALRRIIGRPKRGIGDTALEKLMEWARLNETSLLTACANASERNILDRGAQKP 467

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRN 539
               + +  +   A    P  F   ++               G   ++ L+E +N     
Sbjct: 468 VDFAELMQAMADAADNYEPAPFLRYVIENSGYLDLLRQEGQEGQVRMENLEELVNAAEEW 527

Query: 540 EQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            Q +  ++ + + +                     + V +MT+H AKGLE PVVF+V T 
Sbjct: 528 SQTNEGTIADFLDDAALLSSVDDMRTRKENKDVPEDAVTLMTLHNAKGLEFPVVFIVGTE 587

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +   K                                      +    EE  RL YVG
Sbjct: 588 EGLLPSKGALV----------------------------------EAGGIEEERRLFYVG 613

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +TRA ++L +    N     K+N       + +     E +             W  Y  
Sbjct: 614 ITRAMERLFLTAAQNRMQYGKTNAAEDSRFLEEIEGGFETIDPYGQVIEYRATTWKQYRP 673

Query: 715 STHHPENT 722
           +     + 
Sbjct: 674 TVPAAPSA 681


>gi|304414043|ref|ZP_07395411.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Candidatus
            Regiella insecticola LSR1]
 gi|304283257|gb|EFL91653.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Candidatus
            Regiella insecticola LSR1]
          Length = 1196

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 126/891 (14%), Positives = 273/891 (30%), Gaps = 141/891 (15%)

Query: 105  DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
            D      D+     +    L      + +    ++ K++  VL F+DL+   +  L++  
Sbjct: 306  DALFLAIDQLFADPLTLRDLIITKAIREIREAVQQEKRQRAVLGFDDLLSRLDMALQQS- 364

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                +   I  +    +IDE QDT   Q+ +   +          +     L  +GD KQ
Sbjct: 365  AGESLAAAIRSKYPLAMIDEFQDTDPQQYRIFNRIY--------ANQEHCGLLLIGDPKQ 416

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            +IY+F GA+    +R +       T          L  ++RS+  ++  V+++F   +  
Sbjct: 417  AIYAFRGADIFTYIRARAEINAHYT----------LSTNWRSSHQMVRSVNRLF--NQVN 464

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                 +    I   +++       ++        D +  P    W    + +       +
Sbjct: 465  VPFLFEQIPFINVIAAKKNAELAFEI--------DKKIQPALHFWVQPGEKVNLGEYQQL 516

Query: 345  LARRIAYTISNMIGTDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            +A++ A  I + +    +           R +QA DI +LVR R +  ++      L   
Sbjct: 517  MAQQCATQIRDWLTAGQLGRANLITQKGSRPVQASDITILVRNRTEAMVVRKALNMLAIP 576

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
            +   +  + +  + D    KDL  L + +L+ E + +  C + + L       + ++   
Sbjct: 577  F---IYLSSQDSVFDTPEAKDLFWLLQAVLAPEQERTLRCAMATSLLGLDIKKLDQLNHN 633

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                + + +    +          ++  + E+I         +    +L +  G ++   
Sbjct: 634  EQAWDALVDEFDGYRQHWRK--HGILPMLREIITRR------ELAENLLASPGGERRLTD 685

Query: 520  RFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                     L E L      L +E      + + IS+ E+     +    ++   V+++T
Sbjct: 686  LL------HLGELLQTAATQLDSEHALVRWIAQQISQPERQAEHQQLRLESDAPLVKVVT 739

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P+V+L    +    H+                       +    N   +  
Sbjct: 740  IHKSKGLEYPLVWLPFIVNFRQQHEAFYHDR-------------QNFTAMLDLNPNDESK 786

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            K  ++    E  RLLYV +TR+     I     T   +K      +              
Sbjct: 787  KLAQQERLAEDLRLLYVALTRSVYHCSIGIAPLTKGSRKQGNSDLHQTAIGYLLQRGESG 846

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                              S     +     ++ I Q     KIP    +  +   +   +
Sbjct: 847  DGDYLVEQLAILMTTDSKSDDIAVSVVAALDKQIWQPQKSTKIPLAAKTFTRQIQDHWRV 906

Query: 757  LNPSTIDTKGKTNLES------------------------------------LLSDNQTF 780
             + S +    ++++E                                          +  
Sbjct: 907  TSYSALQQAFQSSVEPISQPQGVVKSVDKLTWLTPLNNDTASKTVSLVNNLTPHHFPRGA 966

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---M 837
              G  +H LL+++        +        K      +      L  I     N     +
Sbjct: 967  IAGTFLHGLLELLDFSQPIDLEWLTDQLLQKGFDTIWSPVLHQWLTDILHTPLNETGVSL 1026

Query: 838  TTAMSCDSYSEVSVSGKINCPKK--------------------------DIIISGRIDQI 871
             +    +  +E+     IN   +                            ++ G ID +
Sbjct: 1027 ASLTPANKQAELQFHLPINSLLQANELDNLIKQYDPISARCQALNFQQVQGMLKGFIDLV 1086

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSIYEKILKD 913
               Q   ++ +YK++        + P         + +  Q  +Y   L  
Sbjct: 1087 FCWQGKFYLLDYKSNWLGEDSRAYHPTAMTMSMAEHRYDLQYQLYTLALHR 1137


>gi|212710171|ref|ZP_03318299.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM
           30120]
 gi|212687170|gb|EEB46698.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM
           30120]
          Length = 723

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 119/694 (17%), Positives = 221/694 (31%), Gaps = 132/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +     S  +             +  +   L   S+       
Sbjct: 33  GAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRINQLVGTSEGGMWIGT 92

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L Q        ++    + + +   ++  LK    +  +   R         
Sbjct: 93  FHGLAHRLLRQHYLDANLPQDFQILDSDDQYRLIRRLLKAMNLDEKQWPPRQGMWYINGK 152

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +             +   Y+EA  +  ++DF +L++  ++L   +     +
Sbjct: 153 KDEGLRPQHIESYGNPVEATWLKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---V 209

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   +IL+DE QDT+ IQ+  IR L  D             +  VGD+ QSIY +
Sbjct: 210 LQHYRERFTNILVDEFQDTNSIQYAWIRVLAGD----------TGKVMIVGDDDQSIYGW 259

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R                  I L  ++RST +IL   + + +   +  G + 
Sbjct: 260 RGAQVENIQRFLNDFP--------GAETIRLEQNYRSTNNILKSANTLIANNSDRLGKN- 310

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW           + +  S    F+ L +       AR +
Sbjct: 311 --------------------LW-------TEGGDGEPISLYCAFNELDE-------ARYV 336

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                    +D  +L R    + ++            ++      
Sbjct: 337 VGRIKQWHENGGAL----------QDCAILYRSNAQSRVMEEAL----IQGAMAYRIYGG 382

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD ++  R I ++ DD SF  ++ +P     E  +  +    R +  T++E
Sbjct: 383 QRFFERQEIKDALSYLRLIANRNDDASFERVVNTPTRGIGERTLDTVRQTARDQQLTLWE 442

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +             S  +  ++ I  L    Q    H     ++     R  +    G
Sbjct: 443 SCEYLLREQVLGGRAASSIERFLELIEALAKETQEMPLHVQADRVINDSGLRAMYEQEKG 502

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +     + L+E +N T     Q+    L  L + L        +     N + V++MT+
Sbjct: 503 EKAQARIENLEELVNATRDFSYQDEDQDLMPLQAFLSHAALESGEGQADVNQDAVQLMTL 562

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE PVVF+V     +F  +                                    
Sbjct: 563 HSAKGLEFPVVFIVGMEEGMFPSQMSMDESG----------------------------- 593

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                  EE  RL YVG+TRA  +L I    +  
Sbjct: 594 -----RLEEERRLAYVGITRAMVKLTITYAESRR 622


>gi|191166051|ref|ZP_03027886.1| DNA helicase II [Escherichia coli B7A]
 gi|190903827|gb|EDV63541.1| DNA helicase II [Escherichia coli B7A]
          Length = 720

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 102/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  +LDF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLLDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|262273203|ref|ZP_06051019.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP
           101886]
 gi|262222781|gb|EEY74090.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP
           101886]
          Length = 725

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 111/583 (19%), Positives = 192/583 (32%), Gaps = 121/583 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + A Y+EA  +  ++DF +L++  ++LL+     A IR        HIL+DE QDT+ I
Sbjct: 172 RVYAAYQEACDRAGLVDFAELLLRCHELLRD---KAHIREHYQARFKHILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +  +             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWLRMMAGN----------SANVMIVGDDDQSIYGWRGAKIENITRFLQDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + +        G S                     LW
Sbjct: 273 --GAETIRLEQNYRSTGNILKASNHLIENNAERMGKS---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S F+ L +       AR +   I                  
Sbjct: 310 -------TEGQEGELISVYSAFNELDE-------ARFVVGKIKAWQDEGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R I ++
Sbjct: 348 --NDTAILYRNNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALAYLRLIGNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQHV 484
            DD +F  ++ +P     +  +  I    R    T++E        Q  A    +  +  
Sbjct: 402 FDDAAFERVVNTPARGLGDRTLDTIRLAARDRGATMWEASNQLLEEQALAGRAANSLRRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE- 540
           I+ ++ L    +  +       ++     R  + +  G +     D L+E +  T + E 
Sbjct: 462 IELVNALEDDTREMALFQQTDYVILHSGLRAMYEAEKGEKAQARIDNLEELVTATRQFEV 521

Query: 541 ----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               Q   S L   +S                 +  ++MT+H+AKGLE PVVF+V     
Sbjct: 522 PEDVQEEMSPLSAFLSHAALEAGE--GQADEFEDAAQLMTLHSAKGLEFPVVFMVGVEEG 579

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F  +                                      +    EE  RL YVGMT
Sbjct: 580 MFPSQMS----------------------------------AEEAGRLEEERRLCYVGMT 605

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           RA  +L I          K         + +         +++
Sbjct: 606 RAMQKLYITHAEMRRVYGKDMFHKASRFIRELPEECLEEVRMR 648


>gi|168467634|ref|ZP_02701471.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195629989|gb|EDX48649.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 720

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 99/583 (16%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +    +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTAARQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|330837379|ref|YP_004412020.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
 gi|329749282|gb|AEC02638.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
          Length = 1218

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 147/1005 (14%), Positives = 298/1005 (29%), Gaps = 152/1005 (15%)

Query: 48   KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE--INKKSPDLKEKLKKSQD 105
              A +           + F+ +  F    +   +K    +      +  D+  +    +D
Sbjct: 247  DIASSFLSLVNGWRASKDFAAIGDFCQDAETKWRKPGQVKAGSALAELKDITPEYVVMRD 306

Query: 106  EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
            +        +      + L      +     +   K+   +L F D+     D+L     
Sbjct: 307  KVGLFA---SALSSRGNLLPIYRFLQRYQEEFFLRKRAAGILTFSDVARLAVDILLTNPA 363

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT-----LFAVG 220
               +R       +HI+IDE QD + +Q +++  L E   +        R      LF VG
Sbjct: 364  ---VRTFYKNRFSHIMIDEFQDNNHLQKDLLYLLAERQDLCGAAIPVARELEKGKLFFVG 420

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            DEKQSIY F GA+     +     +            +EL  ++R+   ++++ + +F  
Sbjct: 421  DEKQSIYRFRGADVSVFKQLGHEIE------EAGGIALELGTNYRTEPALISLFNTLFPG 474

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
               + G  ED     R   SR    G +  +  +  + +   +  ++ W +  ++     
Sbjct: 475  VMGSGG--EDYEADFRPLGSRSPSPGLLSRFTMMHQELNDLEDDPEDPWLATDEA----- 527

Query: 341  SASILARRIAYTISNMIGTDT---IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                 A  +A  I  M+ TD        G  R     +I +L R            R   
Sbjct: 528  ----EASAVADIIEEMLATDAYCVPDGTGGLRRPHPLEIGLLFRTGGGQISYEKAFRA-- 581

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                I         L     + DL +  +      D +++   L+SPL    +  +  I 
Sbjct: 582  --RHIPYSLQVSRALLLEAPVNDLYSWLQLCAYPSDGIAYAAALRSPLCGIMDASLVPIL 639

Query: 458  TQRHETETVYEYIQK--------------------------------------------- 472
               +  ++  +  +                                              
Sbjct: 640  RAYNGLDSTNDSTRDPKGQSQDDDQNERQTDRQTDRQNERHERKYPMWVPFAEPATADIP 699

Query: 473  ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-D 527
                 A     ++ H      +L    +  S  D  + +      R   +S     V  +
Sbjct: 700  CFGSVAPDVKERYLHGCSLYRKLHEKVEAGSVADALSFLWHEGGYRLFLVSHASYHVYLE 759

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              D      L+ +++   SL   +  L     +                V+++T+H +KG
Sbjct: 760  HFDSLWELALQFDRSG-RSLLAFLDYLRPRLGQNEKLDEMELLREEPEGVQMLTIHKSKG 818

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---------PGIPIWIPQSKSRNNIVS 633
            LE P+V +   G    + K      +    +           P         K+ N +  
Sbjct: 819  LEFPIVIISGMGKGGANQKTPAWFPLELEPSSALPQGRTVPVPLHMDPENSFKTGNAVYY 878

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-----SNTSNEKKSNQRTWYDMVYDS 688
               + L+   + E  RLLYV +TRA   L++        S   +EKK       + +  +
Sbjct: 879  QAKEELRSREEAELKRLLYVALTRAQYHLVLSGSDTAKTSGKDSEKKYLYSMVAENLDGN 938

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
               D     +  + +I       +   +  P  + +  +   +           L   + 
Sbjct: 939  LQGDGLSYPLCDSRTIEPVRRKDFYGQSFTPSVSSIVVKAWYEDGQAVHVDTTTLRRAVT 998

Query: 749  NDINEPYILNPSTID----------TKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLP 797
                     +   ++                 + L  ++N     G  +H L+    T  
Sbjct: 999  APSENLTTASIVEVEREMEGEAEGAELPACPSDGLIRTNNLQARFGTYVHALISHALTSS 1058

Query: 798  EHKRKNFITSYCTKN----AKLWPAKEYKNL----------LLSITRLLEN-PMMTTAMS 842
                +   +                K+ + L            + TR+L +   +     
Sbjct: 1059 AQGLQAQESQSPELQSSGSYVFPQGKKREKLFPDGMPEGVDARAFTRMLHDGEQLARNFL 1118

Query: 843  CDS------------YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
              +             SEV    + +   ++I+  G  D +      + + ++KT     
Sbjct: 1119 ESTFWKNVSAQMVSCESEVPFFMRRDENGRNIVYEGIADLVVTLPDRVLVVDFKTDTF-- 1176

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                 +P  H  QL IY +        K+    + Y+  P    +
Sbjct: 1177 ----RVPRIHERQLGIYREAFSRLTRKKT-EAAVCYLRSPDDVAL 1216


>gi|254468181|ref|ZP_05081587.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13]
 gi|207086991|gb|EDZ64274.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13]
          Length = 715

 Score =  281 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 189/547 (34%), Gaps = 113/547 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+  ++  V DF +L++ + +LL   +    +R       NH+L+DE QDTS +
Sbjct: 170 EIYLEYEKQCQREGVADFGELLLRSYELLISNET---LRTHYQNRFNHVLVDEFQDTSEL 226

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ LT               +FAVGD+ QSIY+F GA    +   +          
Sbjct: 227 QYRWLKLLTG----------KNNIIFAVGDDDQSIYAFRGANVGNMQSLQHDFNIE---- 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RS  +IL+  +++    E   G                       LW
Sbjct: 273 ----KVIKLEQNYRSKNNILSAANEIIKNNEKRLGK---------------------DLW 307

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   +  +              +       A+ I   I                  
Sbjct: 308 -------TASGDGDPIKVFRALSDSDE-------AQYILDEIKMWHRKGK---------- 343

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             ++I +L R    + ++            I           +   +K  +A  R I ++
Sbjct: 344 SYQNIAILYRSNAQSRILEHSM----VSNNIPYRVYGGLRFFERAEVKHALAYLRLIANK 399

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK--FQHVIKYI 488
           +DD +F+ ++  P        +  +    +    +++E  +       S+    + I  I
Sbjct: 400 QDDNAFLRIVNFPTRGIGNRSLESLQDISKINNTSLWEAAKSSYKTPTSEKGISYFIDLI 459

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQN---SY 544
            ++    Q  +  +   +++     +  +++   G + +  L+E ++      +N     
Sbjct: 460 RKIEDEIQGLTLAESMDVVINFSGLKNHYMNDKDGQDRVSNLEELVSAATTFSENFNGED 519

Query: 545 SSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            +L+ L   L             AN + +++MT+H+AKGLE  VVF+      +  H+  
Sbjct: 520 KNLE-LTEFLNYTSLESGELQAKANQDALQLMTIHSAKGLEFDVVFITGLEEGLCPHEQS 578

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              ++    EE  RL+YV +TRA + L 
Sbjct: 579 L----------------------------------IEADGLEEERRLMYVAVTRARENLY 604

Query: 664 ICKHSNT 670
           +    + 
Sbjct: 605 LTYAQSR 611


>gi|206576716|ref|YP_002236758.1| exodeoxyribonuclease V, beta subunit [Klebsiella pneumoniae 342]
 gi|206565774|gb|ACI07550.1| exodeoxyribonuclease V, beta subunit [Klebsiella pneumoniae 342]
          Length = 1178

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 131/872 (15%), Positives = 282/872 (32%), Gaps = 128/872 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 +      +  + L        +       K++   L F+D++   ++ L+  D  
Sbjct: 309  LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I Q     +IDE QDT   Q+ + R +                L  +GD KQ+I
Sbjct: 368  ETLASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------RQPETALLLIGDPKQAI 419

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    ++ +          G   +   L  ++RS+  +++ V+++FS+ +N   
Sbjct: 420  YAFRGADIFTYMKAR----------GDVTAHYTLDTNWRSSPGMVSSVNRLFSLSDNPFM 469

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
              E     ++  +   G   TV          D+   P    W    D++      + +A
Sbjct: 470  FREIPFLPVKAAAKNQGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519

Query: 347  RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            +  A  I + +         ++     R +QA DI VLVR R +   +    + L     
Sbjct: 520  QLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  + + L  ++L+ L + +L+ E + +    L + +F  +  DI  +     
Sbjct: 578  -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
              + + E    +        + V+  +  L+              +L  + G ++     
Sbjct: 637  AWDALVEEFSDYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688

Query: 522  GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                   + E L      L +E      L + I+E +    + +    ++ + V+I+T+H
Sbjct: 689  ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V+L          +         +   D G                  ++ 
Sbjct: 743  KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAAVLDLGQD-------------EASLEL 789

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +     E  RLLYV +TRA     +   +  S+ K  N       +       E +   
Sbjct: 790  AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848

Query: 699  KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
             L   +              E     W        PL   E  +++ D+ ++        
Sbjct: 849  GLAARLADFCHGDIALQRPGELDLTPWQAPAATIPPLSARELQRRIADDWRVTSYSGLQQ 908

Query: 748  K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
                   D+     ++ + +    +    +     +    G  +H L + +         
Sbjct: 909  HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHQFPRGAAPGTFLHSLFEELDFTQPVPDG 968

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854
                         + A+    L   +  +L+  +      +    + D   E++      
Sbjct: 969  WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGADIALNQLAARDKQVEMAFYLPIA 1025

Query: 855  ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
                                    ++  +   ++ G ID +   +   ++ +YK++    
Sbjct: 1026 QLLTAERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085

Query: 891  QEIEHI---------PYTHIAQLSIYEKILKD 913
                +           + +  Q  +Y   L  
Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117


>gi|282890111|ref|ZP_06298642.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499962|gb|EFB42250.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 721

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 112/619 (18%), Positives = 186/619 (30%), Gaps = 125/619 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + + A Y+    +   LDF+DL+  T  L ++      I          +LIDE QDT+ 
Sbjct: 164 QKVYAAYQRRMSEYNALDFDDLLYLTVRLFREYPE---ILAYYQNRWQFLLIDEYQDTND 220

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+ ++  L E              LF VGD  QSIYS+ GA+   +L  ++        
Sbjct: 221 AQYAMVTHLVE----------KTHNLFVVGDPDQSIYSWRGAKIYNILNFEKDFP----- 265

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I L  ++RS ++IL   + +    +N    S                     L
Sbjct: 266 ---GAQVIHLEQNYRSRSNILDASNALIDNNQNRLKKS---------------------L 301

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W    +    +  P +                   A  IA  I N               
Sbjct: 302 WSDRGAGEKIKLFPAET--------------ERFEAGFIAERIQNYHEQG---------- 337

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I   +++V  R    + +             I  V            IKD++A  R    
Sbjct: 338 IPYNEMVVFYRTNFQSRVFEDTF----LHNDIPYVIVGGVSFYQRKEIKDILAFLRIANE 393

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-------------VYEYIQKFANCG 477
             D +SF   +  P     +  + KI     +                   +I K     
Sbjct: 394 ASDYVSFARTINLPKRGIGDTTLEKIRVHAQKNRMSILSFAQALIEQQPLPFIFKLNQKQ 453

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI--SRFGNEVIDVLDEFLNF 535
               +  ++ I  L  I+   +  +     +            +    +    L+E ++ 
Sbjct: 454 QEGLKEYLQVIARLQEISAKGTIQEGVEAAIKESGYLGLLKEDAETFQDRKANLEELVSK 513

Query: 536 TLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E ++   SL   + EL             + N V +MT+H  KGLE   VFL    
Sbjct: 514 ANEWETSTPEPSLSAFLEELSLKSTID--DTHHSKNRVNLMTIHNGKGLEFTAVFLAGME 571

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F H + +                                        EE  RL YVG
Sbjct: 572 EDLFPHANSRGNF----------------------------------DALEEERRLCYVG 597

Query: 655 MTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           MTRA + L +    N       +      +   +  +F     + +   +      E+  
Sbjct: 598 MTRAKEYLYLTFARNRHLWGTIRSQRASRFLSEIPPNFIEKIILNRRPDSYRPPIPEYKM 657

Query: 712 YEWSTHHPENTPLEREETI 730
            E      E   LE  +TI
Sbjct: 658 VEPVIAVEEPESLETGDTI 676


>gi|145596329|ref|YP_001160626.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440]
 gi|145305666|gb|ABP56248.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440]
          Length = 795

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 111/772 (14%), Positives = 223/772 (28%), Gaps = 137/772 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P       S  +      +   +         L+        ++  
Sbjct: 92  AAGEMKERVAQLVGPRARLMWVSTFHSACVRILRAEHEH-----AGLKSTFSIYDADDSR 146

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+          P K    + +  +  +LK +L           + F       +  A 
Sbjct: 147 RLMQLVARELDLDP-KRYPARGLAAQVSNLKNELVDP--------EEFAARAKGPNERAL 197

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   ++   LDF+DLI+ T  LL+       +     +   H+L+DE Q
Sbjct: 198 ----AEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH---VAETYRRRFRHVLVDEYQ 250

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ +I+ L                L  VGD  QSIY+F GA  + +L  +R    
Sbjct: 251 DTNHAQYVLIKELVSGTDGLDPAE-----LCVVGDADQSIYAFRGATIRNILEFERDF-- 303

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I L  ++RST  IL   + V     + +     S               
Sbjct: 304 ------TDARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS--------------- 342

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                       ++        + +         +    A  +A  I  ++         
Sbjct: 343 ------------EAGTGDPIVGYVA--------DTEHTEADWVAREIDRLVDDGDT---- 378

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  D+ V  R    + +   +         +           +   ++D +A  R
Sbjct: 379 -----RPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLR 429

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479
            +++++D +S   +L +P     +     +          +    + A           +
Sbjct: 430 ALVNEDDTVSLRRVLNTPRRGIGDRAEACVEALASRDRISFGAALRRARDAPGISTRAAN 489

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                +  +  +  +A+  +P +    +L       +       +    +D L E ++  
Sbjct: 490 GIAEFVALLDGVREVAETSAPEEVLEALLNRSGYLTELEESLDPQDAGRVDNLQELVSVA 549

Query: 537 LRN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                      E+   +++   + +  L      +      +   V +MT+HTAKGLE P
Sbjct: 550 REYTERVEGLGEEGERATVAGFLEQVALVADADQLPADDPEHQGVVTLMTLHTAKGLEFP 609

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VVFL      VF H                                            EE
Sbjct: 610 VVFLTGMEDGVFPHARTFG----------------------------------DNHELEE 635

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YVG+TRA  +L + +    S   +         + +      R ++ + + +   
Sbjct: 636 ERRLAYVGITRARQRLYLSRAVTRSAWGQPAYNAPSRFLEELPAELVRWERTEGSYTSWA 695

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                        +           QL     +     +      + P  + 
Sbjct: 696 GGGGGVGGRADRGQGGFTGGTPKAAQLARRLGVDGSRLATASELPSAPPRVA 747


>gi|300921476|ref|ZP_07137824.1| DNA helicase II [Escherichia coli MS 115-1]
 gi|300411593|gb|EFJ94903.1| DNA helicase II [Escherichia coli MS 115-1]
          Length = 720

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAIAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|300900636|ref|ZP_07118795.1| DNA helicase II [Escherichia coli MS 198-1]
 gi|300355867|gb|EFJ71737.1| DNA helicase II [Escherichia coli MS 198-1]
          Length = 695

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +    +I     +   +IL+DE QDT+ 
Sbjct: 146 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---YILQHYRERFTNILVDEFQDTNN 202

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 203 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 247

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 248 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 283

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 284 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDKGGAL------- 322

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 323 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 375

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 376 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 435

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 436 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 495

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 496 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 555

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 556 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 581

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 582 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 624


>gi|116617682|ref|YP_818053.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096529|gb|ABJ61680.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 766

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 177/551 (32%), Gaps = 118/551 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A Y+   ++   +DF+DLI++T DL K+   +  +  +   +  ++ +DE QDT+
Sbjct: 189 VAEVYAAYQAELRRAQSVDFDDLIMSTIDLFKQ---APDVLERYQNQFEYLHVDEYQDTN 245

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++  L +            R L  VGD  QSIY + GA    +L  ++       
Sbjct: 246 DAQYTIVNLLAK----------RSRNLAVVGDADQSIYGWRGANMNNILNFEKDYP---- 291

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   + L  ++RST +IL   + V +        S                     
Sbjct: 292 ----DAHTVLLEQNYRSTQNILDAANAVINNNNERIDKS--------------------- 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW              + ++        +       A  +   I           + +++
Sbjct: 327 LW-------TENGKGDKITYYRAQTERDE-------ANFVLANIQK---------SRQEK 363

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D  VL R    +  I            +           +   I D+M+    + 
Sbjct: 364 NAAYSDFAVLYRTNAQSRGIEEAL----VKANMPYTMVGGHKFYERKEILDIMSYMNLMT 419

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQ 482
           +  D+ +F  ++  P        I ++    +     Y       E   +      SK  
Sbjct: 420 NPADNAAFERVVNEPKRGIGATSINRLRDFANRMNLSYMGAIENIELAPEITAKAASKLI 479

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
              + +H L    +F +  +   L +     RQ+   +   E    ++ L+EFL+ T   
Sbjct: 480 QFAEMMHNLRQQTEFLTVTELAELAMTKSGYRQKLAEKNDPESQGRLENLEEFLSVTKEF 539

Query: 540 EQ----NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTG 594
           +     +   S+  +   L                  V +MT+H AKGLE PVVFLV   
Sbjct: 540 DSKYNPDDPESVDPMTDFLSSTALMSDLDDFEEGDGAVTLMTLHAAKGLEFPVVFLVGME 599

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                        +     EE  RL YVG
Sbjct: 600 EGIFPLS----------------------------------RAMMDDDQLEEERRLAYVG 625

Query: 655 MTRASDQLIIC 665
           +TRA  +L + 
Sbjct: 626 ITRAMKKLYLT 636


>gi|239832290|ref|ZP_04680619.1| DNA helicase II [Ochrobactrum intermedium LMG 3301]
 gi|239824557|gb|EEQ96125.1| DNA helicase II [Ochrobactrum intermedium LMG 3301]
          Length = 859

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 111/695 (15%), Positives = 196/695 (28%), Gaps = 152/695 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTEDFFVGK------------------------------NTHSSPRTLFAVG 220
            Q+  +R L +                                        +   L  VG
Sbjct: 269 AQYLWLRLLAQRPQSRNTSATTQNTNAPIQPARASEGPRGAGERSELGVSENKVNLCCVG 328

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + + 
Sbjct: 329 DDDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGAAAHLIAH 380

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            E   G +  +                               +  +    + +DS  +  
Sbjct: 381 NEGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE-- 412

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                AR +   I        + +N          + +LVR              L    
Sbjct: 413 -----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL---- 453

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            ++          + L I+D MA  R +    DDL+   ++ +P     E  I ++    
Sbjct: 454 GLNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQVHDYA 513

Query: 460 RHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
           R    +++          +      S  + V++       +       +    IL     
Sbjct: 514 RARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSMIDNTPHTELAETILDESGY 573

Query: 514 RQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
              + +    E    ++ L E +      E         L   LE     +    + + +
Sbjct: 574 TAMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQNEDLD 625

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V IMT+H+AKGLE   VFL      +F H+                             
Sbjct: 626 AVNIMTLHSAKGLEFETVFLPGWEEGLFPHQR---------------------------- 657

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                +    +S  EE  RL YVG+TRA   L I   SN                     
Sbjct: 658 ----ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMW 699

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                 +          E    E +         +                      +N 
Sbjct: 700 QSTIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNTYSTPGWQRAQQNR 759

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
            +       S   ++ +              RG +
Sbjct: 760 SDATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 794


>gi|303231758|ref|ZP_07318481.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513707|gb|EFL55726.1| ATP-dependent nuclease subunit A [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 1273

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 114/714 (15%), Positives = 215/714 (30%), Gaps = 55/714 (7%)

Query: 1   LKNRF-GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT----LQQ 55
           L++   G ++ +  +     +          +   V              A       + 
Sbjct: 216 LRDTLWGRAMWDDQQAEINRIADRIEQMEPLLESPVGPKKWDKVYQEQLAALAQLKGAET 275

Query: 56  ASQTQCIEERFSLLSSFFLTQKFT-PQKNIITQEINKKSPDLKEKLKKSQ-------DEF 107
            S    +       +    T      +K  +   +      L  + K S           
Sbjct: 276 WSDMVDVCRNLDTFTKASFTSLGKALEKGEVDGALADGFKSLGSQNKDSLKGMKNGLFHI 335

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KK 162
            +   +      +      + L    +  Y+EAKK+  ++DF DL      LL     + 
Sbjct: 336 DESVLQQQFKDQYPLIHNLVELTIAFHKAYDEAKKEQGIMDFSDLEHLCLALLVEPGTED 395

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               + +  ++      I++DE QDT+ +Q  +I  +           S     F VGD 
Sbjct: 396 DPKPSEVALELQDTFKEIMVDEYQDTNGVQETIINLI-----------SRVDNRFYVGDV 444

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQ+IYSF  A+                        I+L  +FRS  +ILT  + +F    
Sbjct: 445 KQAIYSFRMADSSL---FMNKYNTYGLMNDAVERRIDLAKNFRSHENILTTTNFIFYQIM 501

Query: 283 NAQGLSEDSTTTIRHRSSR-------IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +    D          R           G V++   + +   ++ +       +  D 
Sbjct: 502 TQEAAELDYGEKESLIPGRIVEKAPSDWVGGAVEIH-LLDTSDTNRSDEADGDSETAGDE 560

Query: 336 LPQESSASILARRIAYTISNMIGTDTIF--SNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                        I   I  +  +      ++G  R IQ +D  VL R            
Sbjct: 561 PENN---ERELDFIIQKIKELYASKKQVQNADGSFRQIQWRDFAVLRRSLAGWGTRAV-- 615

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   I  V N+R    +   I+ L++L + I + E DL    +L S L     +++
Sbjct: 616 -AAMRQAGIPAVVNERDGYFEAQEIQLLLSLLQIIDNPEQDLPMAAVLHSGLVGLDANEL 674

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             +     +                 +    I +I     +++     D    I      
Sbjct: 675 GAL-RLTGDGSLWSVMPTYAEQDQDERLLQFIAHIERWRTLSRRHGVADLLWDIYETLDY 733

Query: 514 RQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSA 567
                    G      +          E + +  L   +  +E          +    + 
Sbjct: 734 VNYVGAMPNGLVRRANVMALYERAKGFESSGFRGLFRFLRFVESLRDSNQDMAVANVVTE 793

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + VR+MT+H +KGLE PVVFL     +  +      + +  +            +   
Sbjct: 794 ADDVVRLMTIHKSKGLEFPVVFLSGVQKKFNTMDFNSPLLVDKNGGIGLKGYYPDIRVSY 853

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
            +            + + E  R+LYV +TRA D+L +  + N   +K+      
Sbjct: 854 PSMPWLYCKSIKSDAMKAEEQRILYVALTRARDKLFLIGYINKEIKKEKGVGAH 907



 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 52/159 (32%), Gaps = 13/159 (8%)

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-ITRLLENPM 836
                 G ++H+ +Q +      ++         +    +  +E   L    +     + +
Sbjct: 1108 TGAQWGTLMHEAMQWLPVKKYTQQSMTDMLDSLQAEGKFSDEERSLLSDRSLYGFFNSDL 1167

Query: 837  MTTAMS-CDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHH 887
                ++      E+  S   +           + + + G ID + +      + +YKT  
Sbjct: 1168 GQRLIASKRVERELPFSMLFDGNRVYPDVENGERLFLQGIIDTVFVEDDQWVLVDYKTDR 1227

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                +   +   +  Q+ +Y++ L+    N  +    IY
Sbjct: 1228 VKSGD--ELIRRYKIQMDLYKEALERL-TNMPVKASYIY 1263


>gi|315501309|ref|YP_004080196.1| ATP-dependent DNA helicase pcra [Micromonospora sp. L5]
 gi|315407928|gb|ADU06045.1| ATP-dependent DNA helicase PcrA [Micromonospora sp. L5]
          Length = 803

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 115/793 (14%), Positives = 225/793 (28%), Gaps = 137/793 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  +      +   +         L+        ++  
Sbjct: 100 AAGEMKERVAALVGPRARLMWVSTFHSACVRILRAEHEH-----AGLKSTFSIYDADDSR 154

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+          P K    + +  +  +LK +L           + F       +  A 
Sbjct: 155 RLMQMVARELDLDP-KRYPARGLAAQVSNLKNELVDP--------EEFAGRAKGPNERAL 205

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   ++   LDF+DLI+ T  LL+       +     +   H+L+DE Q
Sbjct: 206 ----AEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH---VAESYRRRFRHVLVDEYQ 258

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ +I+ L                L  VGD  QSIY+F GA  + +L  +R    
Sbjct: 259 DTNHAQYVLIKELVSGTEGIPPAE-----LCVVGDADQSIYAFRGATIRNILEFERDF-- 311

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I L  ++RST  IL   + V     + +     S               
Sbjct: 312 ------TDARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS--------------- 350

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                       D+    Q   + +         +    A  +A  I  ++         
Sbjct: 351 ------------DAGSGEQIVGYVA--------DTEHAEADWVAREIDRLVDDGET---- 386

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  D+ V  R    + +   +         +           +   ++D +A  R
Sbjct: 387 -----RPGDVAVFYRTNAMSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLR 437

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479
            +++ +D +S   +L +P     E     +          +    + A           +
Sbjct: 438 AVVNDDDTVSLRRVLNTPRRGIGERAEACVEALSARDRISFGAALRRAKDAPGISTRAAN 497

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                +  +     +A   +P +    +L       +       +    +D L E ++  
Sbjct: 498 GIAEFVALLDAARELAGTGTPEEVLEAVLTRSGYLAELEESLDPQDAGRVDNLQELVSVA 557

Query: 537 LRN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                        +  ++L   + +  L      I      +   V +MT+HTAKGLE P
Sbjct: 558 REYTERIEALGADDERATLAGFLEQVALVADADQIPSDDPDHQGVVTLMTLHTAKGLEFP 617

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VVFL      VF H                                  L         EE
Sbjct: 618 VVFLTGLEDGVFPH----------------------------------LRSLGDTRELEE 643

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YVG+TRA  +L + +    S             + +      R ++ + + +   
Sbjct: 644 ERRLAYVGITRARQRLYLSRAVTRSAWGAPAYNPPSRFLEELPPELVRWERTEGSYTSWG 703

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                          +           + ++           +++ +   +         
Sbjct: 704 GGGGGVGGRADRLGRSGFAGGTPKATELAKRLGVDASRLATASELKQAPKVAVGDRVNHQ 763

Query: 767 KTNLESLLSDNQT 779
           +  L  +L+    
Sbjct: 764 RYGLGRVLAVEGA 776


>gi|227535467|ref|ZP_03965516.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227186877|gb|EEI66944.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 751

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 117/662 (17%), Positives = 204/662 (30%), Gaps = 132/662 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +A       E+ +L+          P K    + I       K +L   Q          
Sbjct: 110 RAFTIADPAEQLTLVKHILADFNLDP-KRYDPKSILGAISSAKNELVDPQ---------- 158

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            TY   ++      +   + A Y++  + +  LDF+DLI+ T  L +K            
Sbjct: 159 -TYANEQANSPFTKVVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKD---KETLAFYQ 214

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++  +I +DE QDT+  Q++++  L E +            L  VGD  QSIY + GA  
Sbjct: 215 RKFRYIHVDEYQDTNEAQYQLVHMLAEGY----------HNLCVVGDADQSIYGWRGANM 264

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + +L  K+   K          ++ L  ++RST  IL+  + V    +N Q  +      
Sbjct: 265 QNILDFKKDYPK--------AQVVLLEQNYRSTKTILSAANDVIQNNQNRQAKT------ 310

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                          LW       +++   +   + +      +   A  + RRI   I+
Sbjct: 311 ---------------LW------TENREGDKITYYRA----QSETDEAIFVIRRIEAEIA 345

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           +                +  D  +L R    +  I            I           D
Sbjct: 346 DNHR-------------KYSDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYD 388

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK- 472
              I+D +A  R +++ EDD+SF  ++  P        + K+         ++ E     
Sbjct: 389 RKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRGIGNTSVEKLEAIANEHDWSLLEAAANA 448

Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-- 526
                A     +     K I +L    +  +  +    IL          +    E    
Sbjct: 449 ELSPIAGKARGQLAKFGKMIQQLGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTR 508

Query: 527 -DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            + L+E L+ T         E        + ++EL             +  EV +MT+H 
Sbjct: 509 IENLEELLSVTQGFDSRYQPENEDSDIFVDFLAELALLSDQD--DVEEDAQEVTLMTLHA 566

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFLV     +F                                         
Sbjct: 567 AKGLEFPVVFLVGMEEGLFPLSRASMDESELEEERRL----------------------- 603

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                       YVG+TRA  +L +          +         + +   +   V    
Sbjct: 604 -----------AYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPDLLEVIGTT 652

Query: 700 LT 701
             
Sbjct: 653 QP 654


>gi|324007528|gb|EGB76747.1| DNA helicase II [Escherichia coli MS 57-2]
          Length = 696

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 147 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 203

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 204 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 248

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 249 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 284

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 285 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 323

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 324 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 376

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 377 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 436

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 437 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 496

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 497 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 556

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 557 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 582

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 583 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 625


>gi|68536650|ref|YP_251355.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
 gi|68264249|emb|CAI37737.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
          Length = 830

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 199/703 (28%), Gaps = 171/703 (24%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKE-----KLKKSQDEFIKIRDRFNTYKMFKST 123
           L++ F        K ++T  I   S DLKE      L    +   ++       +  +  
Sbjct: 114 LNTNFSIYDSDDSKRLMTMIIKDASLDLKEFSPRGVLNVISNWKNELVGPVGALEEAQRD 173

Query: 124 LASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
               T     L   Y+   +    +DF+DLI     +L        +R    +   HI++
Sbjct: 174 SNPHTAQIATLYKTYQNRLRAANAVDFDDLIGEVVAILNNNPD---VREHYRRRFRHIMV 230

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q+E++ +L                L  VGD  QSIY+F GA  + +   +R
Sbjct: 231 DEYQDTNHAQYELVAALAGKGKA-------ECELCVVGDADQSIYAFRGATIRNIEEFER 283

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                          I L  ++RST  IL+  + V    +  +                 
Sbjct: 284 DYP--------DAHTILLEQNYRSTQKILSAANAVIDRNQGRRPKK-------------- 321

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  LW           + +        +   +       A  I   I +++  +  
Sbjct: 322 -------LW-------TDLGDGELIGGYVADNEHDE-------ANFIVEQIDDLVDNE-- 358

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                       DI V+ R    +  I  +         +           +   I+D++
Sbjct: 359 -------GYSYGDISVMYRTNNASRAIEDVL----VRSGMPYKVVGGTRFYERREIRDIV 407

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK--------F 473
           A  + + + +D ++   ++ +P     +  I ++      +       +           
Sbjct: 408 AYLKVLDNADDTVALRRIINTPRRGIGDKAIAQVTVHAEGQGIGFSAALGDAAAGKVAGL 467

Query: 474 ANCGISKFQHVIKYIHELIHIAQFC-------------SPHDFFTLILGAKKGRQQFISR 520
           +  G +     ++ +  L    +                     + +L     ++     
Sbjct: 468 SPRGRNSIGKFLEMMDALRAETESMEMTASDGSGLGLPDLGRVISAVLDVTGYKELLEKS 527

Query: 521 FGNE---VIDVLDEFLNFTLRNEQNS---------------------------------- 543
              +    +D L+E ++      Q S                                  
Sbjct: 528 NDPQDGARLDNLNELVSVGHEFSQESANLKAYEEMPGGGAGDAESDSSSDSAESAEAMLA 587

Query: 544 -----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  SLQ  +  +       +       + V +MT+HTAKGLE PVVFL       F
Sbjct: 588 EGEAPLGSLQAFLERVSLVADADQIPADE-QDMVTLMTLHTAKGLEFPVVFLTGWEDGQF 646

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                             E  RL YVG+TRA
Sbjct: 647 PHMRALGDPT----------------------------------ELAEERRLAYVGITRA 672

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L + +    S             + +   +     + +  
Sbjct: 673 KQRLFLTRAITRSGWGAPVNNPPSRFLSEVPEDLMEWIREEPA 715


>gi|330427927|gb|AEC19261.1| DNA helicase II [Pusillimonas sp. T7-7]
          Length = 761

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/696 (15%), Positives = 234/696 (33%), Gaps = 140/696 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L S    Q  + ++ +    I+ +    ++     Q      ++
Sbjct: 93  LRAHHRDAGLPQTFQILDSA--DQLASIKRLLKGAGIDDEKFPPRDV----QRFINGAKE 146

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   +   A       +   Y++  ++  V+DF +L++   +LL++    A IR  
Sbjct: 147 DGQRPADVEIYDAHRRRLVDIYQLYQDQCEREGVVDFAELLLRAYELLQRN---APIREH 203

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   HIL+DE QDT+++Q+  +  L                +FAVGD+ QSIY+F GA
Sbjct: 204 YQRRFQHILVDEFQDTNMLQYRWLILLAG----------GGAHMFAVGDDDQSIYAFRGA 253

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R   K         ++I L  ++RS   IL   + + +      G +  + 
Sbjct: 254 NVGNMADFERDYAK--------GNVIRLEQNYRSYGHILDSANALIAHNSARLGKNLWTE 305

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G+   V                             +++S  + A+ I   
Sbjct: 306 QG-------EGEPVRV----------------------------IEQASDLLEAQWIIDE 330

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  +I    +           ++I VL R    + +I            +          
Sbjct: 331 IKALINDGRLR----------REIAVLYRSNAQSRIIEHAL----FSAGVPYKVYGGLRF 376

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R + +  DD S++ ++  P        + ++    R +  +++  + 
Sbjct: 377 FERQEVKHALAYLRLMDNPHDDTSWLRVVNFPTRGIGARTLEQLADVARQQGGSLFRAVP 436

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530
             +  G +      + I ++ H AQ  S  +    ++      + + + R G + ++ L 
Sbjct: 437 AMSGKGGNNLARFAELIQQMAHEAQVLSLPELIEHVVHHSGLLEHYQNDREGADRLENLQ 496

Query: 531 EF-------------------------LNFTL--RNEQNSYSSLQELISELEQYPPTI-K 562
           E                          L       +   + +++  L + L         
Sbjct: 497 ELVNAAAAFVAEANFEGLPAGRIPDDALAAASLGADASEALAAMSPLAAFLTHASLEAGD 556

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
               A  + V++MTVH AKGLE   VF+      +F H++                    
Sbjct: 557 NQAQAGQDAVQLMTVHAAKGLEFDSVFITGVEEGLFPHENSL------------------ 598

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                           L+ +  EE  RL+YV +TRA ++L +    +     ++      
Sbjct: 599 ----------------LEAAGLEEERRLMYVAITRARERLYLTLAQSRMLHGQTRYAMRS 642

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             + +      +    +   +  + +  A+  +   
Sbjct: 643 RFLDEIPDEHLKWLTPREGRAPVQAQQNAWSGAFRR 678


>gi|30064891|ref|NP_839062.1| DNA-dependent helicase II [Shigella flexneri 2a str. 2457T]
 gi|56480441|ref|NP_709620.2| DNA-dependent helicase II [Shigella flexneri 2a str. 301]
 gi|110807496|ref|YP_691016.1| DNA-dependent helicase II [Shigella flexneri 5 str. 8401]
 gi|30043151|gb|AAP18873.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str.
           2457T]
 gi|56383992|gb|AAN45327.2| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str.
           301]
 gi|110617044|gb|ABF05711.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 5 str.
           8401]
 gi|281603206|gb|ADA76190.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2002017]
 gi|313647145|gb|EFS11600.1| DNA helicase II [Shigella flexneri 2a str. 2457T]
          Length = 720

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 102/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAEIIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|325499218|gb|EGC97077.1| DNA helicase II [Escherichia fergusonii ECD227]
          Length = 738

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 189 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 245

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 246 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 290

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 291 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 326

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 327 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 365

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 366 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 418

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 419 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 478

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 479 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 538

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 539 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 598

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 599 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 624

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 625 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 667


>gi|282859649|ref|ZP_06268751.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010]
 gi|282587567|gb|EFB92770.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010]
          Length = 839

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 108/554 (19%), Positives = 170/554 (30%), Gaps = 119/554 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE   K+   +DF+D+++NT  LL+       +R K      +IL+DE QDT+  Q
Sbjct: 176 IYQAYEARCKQANAMDFDDILVNTYVLLRDN---QEVRQKYATLFEYILVDEYQDTNFAQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +I+ L E            + +  VGD+ QSIYSF GA    +L  K+          
Sbjct: 233 VSIIQQLAEL----------HQRVCVVGDDYQSIYSFRGANIDNILDFKQKF-------- 274

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 +L  ++RST  I+   + +    E            I          G    ++
Sbjct: 275 IGAKTFKLERNYRSTQLIVQAANSLMKHNE----------RQIPKEVYSQEDEGDKLQYK 324

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
              S  +                          A  +A  I  +   D            
Sbjct: 325 PCYSDKE-------------------------EALIVAKEIQRIKRAD---------NAT 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    +       R       +               IKD++A  R + + +
Sbjct: 351 YSDFAILYRTNAQSRTFEDELR----KQTVPYKIIGGLSFYQRKEIKDIIAYFRLVANND 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE-------YIQKFANCGISKFQHV 484
           D+ +F  ++  P        I KI         ++++       Y        ++K    
Sbjct: 407 DEEAFRRIINYPARGIGNTTIQKIVDCASKNNVSLWQIITNPSLYDLNVNKGTLAKINGF 466

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           I+ I   I        +     I+          S    E     + L+EFL+       
Sbjct: 467 IELISNFIDRLSTTDAYLLGKDIIQLSGISADIYSSTDPEALSRQENLEEFLSAMQDFVE 526

Query: 540 --EQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              +        L   L++            N  +V +MTVH AKGLE P VF+V     
Sbjct: 527 TGREEGREDYLYLTDYLQEVALYSDADKADDNSPKVTLMTVHAAKGLEFPTVFIVGLEEN 586

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F                                          K   EE  RLLYV +T
Sbjct: 587 IFPSPMS----------------------------------ASSKREIEEERRLLYVAIT 612

Query: 657 RASDQLIICKHSNT 670
           RA    II    N 
Sbjct: 613 RAERHCIITNAKNR 626


>gi|239631845|ref|ZP_04674876.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239526310|gb|EEQ65311.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 751

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 118/662 (17%), Positives = 204/662 (30%), Gaps = 132/662 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +A       E+ +L+          P K    + I       K +L   Q          
Sbjct: 110 RAFTIADPAEQLTLVKHILADFNLDP-KRYDPKSILGAISSAKNELVDPQ---------- 158

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            TY   ++      +   + A Y++  + +  LDF+DLI+ T  L +K            
Sbjct: 159 -TYANEQANSPFTKVVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKD---KETLAFYQ 214

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++  +I +DE QDT+  Q++++  L E +            L  VGD  QSIY + GA  
Sbjct: 215 RKFRYIHVDEYQDTNEAQYQLVHMLAEGY----------HNLCVVGDADQSIYGWRGANM 264

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + +L  K+   K          +I L  ++RST  IL+  + V    +N Q  +      
Sbjct: 265 QNILDFKKDYPK--------AQVILLEQNYRSTKTILSAANDVIQNNQNRQAKT------ 310

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                          LW       +++   +   + +      +   A  + RRI   I+
Sbjct: 311 ---------------LW------TENREGDKITYYRA----QSETDEAIFVIRRIEAEIA 345

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           +                +  D  +L R    +  I            I           D
Sbjct: 346 DNHR-------------KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYD 388

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK- 472
              I+D +A  R +++ EDD+SF  ++  P        + K+         ++ E     
Sbjct: 389 RKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRGIGNTSVEKLEAFANEHDWSLLEAAANA 448

Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-- 526
                A     +     K I +L    +  +  +    IL          +    E    
Sbjct: 449 ELSPIAGKARGQLAKFGKMIQQLGTRRKDLNVTEMMQAILEDSGYLSTLRAAHNLEADTR 508

Query: 527 -DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            + L+E L+ T         E        + ++EL             +  EV +MT+H 
Sbjct: 509 IENLEELLSVTQGFDSRYQPENEDSDIFVDFLAELALLSDQD--DVEEDAQEVTLMTLHA 566

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFLV     +F                                         
Sbjct: 567 AKGLEFPVVFLVGMEEGLFPLSRASMDESELEEERRL----------------------- 603

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                       YVG+TRA  +L +          +         + +   +   V    
Sbjct: 604 -----------AYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPDLLEVIGNT 652

Query: 700 LT 701
             
Sbjct: 653 QP 654


>gi|121634106|ref|YP_974351.1| DNA helicase II [Neisseria meningitidis FAM18]
 gi|120865812|emb|CAM09544.1| DNA helicase II [Neisseria meningitidis FAM18]
 gi|325131618|gb|EGC54325.1| DNA helicase II [Neisseria meningitidis M6190]
 gi|325139127|gb|EGC61673.1| DNA helicase II [Neisseria meningitidis ES14902]
          Length = 735

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFILDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKIAAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                   +    IL      + + ++ G   + +D LDE +N  +    E +++  L E
Sbjct: 467 QVGQLPLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +    A    V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNAALESGENQAGAGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|218692089|ref|YP_002400301.1| DNA-dependent helicase II [Escherichia coli ED1a]
 gi|218429653|emb|CAR10617.2| DNA-dependent ATPase I and helicase II [Escherichia coli ED1a]
          Length = 720

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|15804402|ref|NP_290442.1| DNA-dependent helicase II [Escherichia coli O157:H7 EDL933]
 gi|15833997|ref|NP_312770.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. Sakai]
 gi|74314325|ref|YP_312744.1| DNA-dependent helicase II [Shigella sonnei Ss046]
 gi|110644138|ref|YP_671868.1| DNA-dependent helicase II [Escherichia coli 536]
 gi|117626072|ref|YP_859395.1| DNA-dependent helicase II [Escherichia coli APEC O1]
 gi|161486051|ref|NP_756593.2| DNA-dependent helicase II [Escherichia coli CFT073]
 gi|162138327|ref|YP_543324.2| DNA-dependent helicase II [Escherichia coli UTI89]
 gi|168750375|ref|ZP_02775397.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113]
 gi|168753710|ref|ZP_02778717.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401]
 gi|168768094|ref|ZP_02793101.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486]
 gi|168775636|ref|ZP_02800643.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196]
 gi|168780712|ref|ZP_02805719.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076]
 gi|168786651|ref|ZP_02811658.1| DNA helicase II [Escherichia coli O157:H7 str. EC869]
 gi|168801123|ref|ZP_02826130.1| DNA helicase II [Escherichia coli O157:H7 str. EC508]
 gi|170679582|ref|YP_001746130.1| DNA-dependent helicase II [Escherichia coli SMS-3-5]
 gi|191174264|ref|ZP_03035773.1| DNA helicase II [Escherichia coli F11]
 gi|194438675|ref|ZP_03070763.1| DNA helicase II [Escherichia coli 101-1]
 gi|195938102|ref|ZP_03083484.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. EC4024]
 gi|208807358|ref|ZP_03249695.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206]
 gi|208813979|ref|ZP_03255308.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045]
 gi|208819804|ref|ZP_03260124.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042]
 gi|209396002|ref|YP_002273330.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115]
 gi|215489141|ref|YP_002331572.1| DNA-dependent helicase II [Escherichia coli O127:H6 str. E2348/69]
 gi|218550963|ref|YP_002384754.1| DNA-dependent helicase II [Escherichia fergusonii ATCC 35469]
 gi|227888602|ref|ZP_04006407.1| excision endonuclease subunit UvrD [Escherichia coli 83972]
 gi|253775563|ref|YP_003038394.1| DNA-dependent helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163755|ref|YP_003046863.1| DNA-dependent helicase II [Escherichia coli B str. REL606]
 gi|254795809|ref|YP_003080646.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. TW14359]
 gi|261225587|ref|ZP_05939868.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255633|ref|ZP_05948166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285227|ref|YP_003502045.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615]
 gi|293413255|ref|ZP_06655917.1| DNA helicase II [Escherichia coli B354]
 gi|301025742|ref|ZP_07189257.1| DNA helicase II [Escherichia coli MS 69-1]
 gi|301047305|ref|ZP_07194391.1| DNA helicase II [Escherichia coli MS 185-1]
 gi|306815148|ref|ZP_07449301.1| DNA-dependent helicase II [Escherichia coli NC101]
 gi|312969459|ref|ZP_07783661.1| DNA helicase II [Escherichia coli 2362-75]
 gi|331660158|ref|ZP_08361094.1| DNA helicase II [Escherichia coli TA206]
 gi|12518681|gb|AAG59006.1|AE005612_9 DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. EDL933]
 gi|13364219|dbj|BAB38166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. Sakai]
 gi|73857802|gb|AAZ90509.1| DNA-dependent ATPase I and helicase II [Shigella sonnei Ss046]
 gi|110345730|gb|ABG71967.1| DNA helicase II [Escherichia coli 536]
 gi|115515196|gb|ABJ03271.1| DNA-dependent ATPase I and helicase II [Escherichia coli APEC O1]
 gi|170517300|gb|ACB15478.1| DNA helicase II [Escherichia coli SMS-3-5]
 gi|187768818|gb|EDU32662.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196]
 gi|188015427|gb|EDU53549.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113]
 gi|189001426|gb|EDU70412.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076]
 gi|189359023|gb|EDU77442.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401]
 gi|189362636|gb|EDU81055.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486]
 gi|189373276|gb|EDU91692.1| DNA helicase II [Escherichia coli O157:H7 str. EC869]
 gi|189376660|gb|EDU95076.1| DNA helicase II [Escherichia coli O157:H7 str. EC508]
 gi|190905447|gb|EDV65077.1| DNA helicase II [Escherichia coli F11]
 gi|194422479|gb|EDX38478.1| DNA helicase II [Escherichia coli 101-1]
 gi|208727159|gb|EDZ76760.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206]
 gi|208735256|gb|EDZ83943.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045]
 gi|208739927|gb|EDZ87609.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042]
 gi|209157402|gb|ACI34835.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115]
 gi|209753228|gb|ACI74921.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753230|gb|ACI74922.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753232|gb|ACI74923.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753234|gb|ACI74924.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|209753236|gb|ACI74925.1| hypothetical protein ECs4743 [Escherichia coli]
 gi|215267213|emb|CAS11661.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218358504|emb|CAQ91151.1| DNA-dependent ATPase I and helicase II [Escherichia fergusonii ATCC
           35469]
 gi|227834441|gb|EEJ44907.1| excision endonuclease subunit UvrD [Escherichia coli 83972]
 gi|242379343|emb|CAQ34155.1| DNA-dependent ATPase I and helicase II, subunit of UvrABC
           Nucleotide Excision Repair Complex [Escherichia coli
           BL21(DE3)]
 gi|253326607|gb|ACT31209.1| DNA helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975656|gb|ACT41327.1| DNA-dependent ATPase I and helicase II [Escherichia coli B str.
           REL606]
 gi|253979812|gb|ACT45482.1| DNA-dependent ATPase I and helicase II [Escherichia coli BL21(DE3)]
 gi|254595209|gb|ACT74570.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7
           str. TW14359]
 gi|281180862|dbj|BAI57192.1| DNA helicase II [Escherichia coli SE15]
 gi|284923921|emb|CBG37020.1| DNA helicase II [Escherichia coli 042]
 gi|290765100|gb|ADD59061.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615]
 gi|291468203|gb|EFF10700.1| DNA helicase II [Escherichia coli B354]
 gi|294492576|gb|ADE91332.1| DNA helicase II [Escherichia coli IHE3034]
 gi|300300824|gb|EFJ57209.1| DNA helicase II [Escherichia coli MS 185-1]
 gi|300395865|gb|EFJ79403.1| DNA helicase II [Escherichia coli MS 69-1]
 gi|305851517|gb|EFM51971.1| DNA-dependent helicase II [Escherichia coli NC101]
 gi|307555939|gb|ADN48714.1| DNA helicase II [Escherichia coli ABU 83972]
 gi|307628876|gb|ADN73180.1| DNA-dependent helicase II [Escherichia coli UM146]
 gi|312286006|gb|EFR13924.1| DNA helicase II [Escherichia coli 2362-75]
 gi|315296794|gb|EFU56086.1| DNA helicase II [Escherichia coli MS 16-3]
 gi|320197622|gb|EFW72234.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli WV_060327]
 gi|320639296|gb|EFX08918.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. G5101]
 gi|320644681|gb|EFX13731.1| DNA-dependent helicase II [Escherichia coli O157:H- str. 493-89]
 gi|320650006|gb|EFX18509.1| DNA-dependent helicase II [Escherichia coli O157:H- str. H 2687]
 gi|320655352|gb|EFX23294.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320660978|gb|EFX28421.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666102|gb|EFX33116.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. LSU-61]
 gi|323167561|gb|EFZ53267.1| DNA helicase II [Shigella sonnei 53G]
 gi|323189761|gb|EFZ75040.1| DNA helicase II [Escherichia coli RN587/1]
 gi|323949303|gb|EGB45193.1| DNA helicase II [Escherichia coli H252]
 gi|323954020|gb|EGB49818.1| DNA helicase II [Escherichia coli H263]
 gi|323959068|gb|EGB54737.1| DNA helicase II [Escherichia coli H489]
 gi|323969346|gb|EGB64645.1| DNA helicase II [Escherichia coli TA007]
 gi|323974395|gb|EGB69523.1| DNA helicase II [Escherichia coli TW10509]
 gi|324111038|gb|EGC05025.1| DNA helicase II [Escherichia fergusonii B253]
 gi|326344269|gb|EGD68029.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str.
           1125]
 gi|326347903|gb|EGD71617.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str.
           1044]
 gi|330908113|gb|EGH36632.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli AA86]
 gi|331052726|gb|EGI24761.1| DNA helicase II [Escherichia coli TA206]
          Length = 720

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|152971748|ref|YP_001336857.1| exonuclease V subunit beta [Klebsiella pneumoniae subsp. pneumoniae
            MGH 78578]
 gi|238896335|ref|YP_002921071.1| exonuclease V subunit beta [Klebsiella pneumoniae NTUH-K2044]
 gi|150956597|gb|ABR78627.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Klebsiella pneumoniae subsp. pneumoniae MGH
            78578]
 gi|238548653|dbj|BAH65004.1| exonuclease V beta subunit [Klebsiella pneumoniae subsp. pneumoniae
            NTUH-K2044]
          Length = 1178

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 130/872 (14%), Positives = 281/872 (32%), Gaps = 128/872 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 +      +  + L        +       K++   L F+D++   ++ L+  D  
Sbjct: 309  LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I Q     +IDE QDT   Q+ + R +                L  +GD KQ+I
Sbjct: 368  ETLASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------RQPETALLLIGDPKQAI 419

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    ++ +          G   +   L  ++RS+  ++  V+++FS+ +N   
Sbjct: 420  YAFRGADIFTYMKAR----------GDVAAHYTLDTNWRSSPGMVGSVNRLFSLSDNPFM 469

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
              E     ++  +   G   TV          D+   P    W    D++      + +A
Sbjct: 470  FHEIPFLPVKAAAKNKGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519

Query: 347  RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            +  A  I + +         ++     R +QA DI VLVR R +   +    + L     
Sbjct: 520  QLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  + + L  ++L+ L + +L+ E + +    L + +F  +  DI  +     
Sbjct: 578  -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
              + + E   ++        + V+  +  L+              +L  + G ++     
Sbjct: 637  AWDALVEEFSEYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688

Query: 522  GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                   + E L      L +E      L + I+E +    + +    ++ + V+I+T+H
Sbjct: 689  ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V+L          +         +   D G                  ++ 
Sbjct: 743  KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAAVLDLGQD-------------EASLEL 789

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +     E  RLLYV +TRA     +   +  S+ K  N       +       E +   
Sbjct: 790  AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848

Query: 699  KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
             L   +              E     W         L   E  +++ D+ ++        
Sbjct: 849  GLAARLADFCHGDIALQIPGELDLTPWQAPAATIPRLSARELQRRIADDWRVTSYSGLQQ 908

Query: 748  K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
                   D+     ++ + +    +    +     +    G  +H L + +         
Sbjct: 909  HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHQFPRGAAPGTFLHSLFEELDFTQPVPEG 968

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854
                         + A+    L   +  +L+  +      +    + D   E++      
Sbjct: 969  WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGPDIALNQLAARDKQVEMAFYLPIA 1025

Query: 855  ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
                                    ++  +   ++ G ID +   +   ++ +YK++    
Sbjct: 1026 QLLTAERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085

Query: 891  QEIEHI---------PYTHIAQLSIYEKILKD 913
                +           + +  Q  +Y   L  
Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117


>gi|148558984|ref|YP_001259307.1| DNA helicase II [Brucella ovis ATCC 25840]
 gi|148370241|gb|ABQ60220.1| DNA helicase II [Brucella ovis ATCC 25840]
          Length = 858

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 196/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALIMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           + IMT+H+AKGLE   VFL      +F H+                              
Sbjct: 626 INIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +        + E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAQVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|16131665|ref|NP_418258.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. MG1655]
 gi|89110206|ref|AP_003986.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. W3110]
 gi|170083295|ref|YP_001732615.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. DH10B]
 gi|193065672|ref|ZP_03046737.1| DNA helicase II [Escherichia coli E22]
 gi|194429230|ref|ZP_03061758.1| DNA helicase II [Escherichia coli B171]
 gi|194434041|ref|ZP_03066311.1| DNA helicase II [Shigella dysenteriae 1012]
 gi|218697531|ref|YP_002405198.1| DNA-dependent helicase II [Escherichia coli 55989]
 gi|238902889|ref|YP_002928685.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952]
 gi|256021443|ref|ZP_05435308.1| DNA-dependent helicase II [Shigella sp. D9]
 gi|256026160|ref|ZP_05440025.1| DNA-dependent helicase II [Escherichia sp. 4_1_40B]
 gi|260846411|ref|YP_003224189.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O103:H2 str. 12009]
 gi|293468131|ref|ZP_06664543.1| DNA helicase II [Escherichia coli B088]
 gi|300818716|ref|ZP_07098923.1| DNA helicase II [Escherichia coli MS 107-1]
 gi|300823349|ref|ZP_07103480.1| DNA helicase II [Escherichia coli MS 119-7]
 gi|300923317|ref|ZP_07139365.1| DNA helicase II [Escherichia coli MS 182-1]
 gi|300955181|ref|ZP_07167578.1| DNA helicase II [Escherichia coli MS 175-1]
 gi|301646119|ref|ZP_07246019.1| DNA helicase II [Escherichia coli MS 146-1]
 gi|307140512|ref|ZP_07499868.1| DNA-dependent helicase II [Escherichia coli H736]
 gi|307313613|ref|ZP_07593233.1| DNA helicase II [Escherichia coli W]
 gi|312971900|ref|ZP_07786074.1| DNA helicase II [Escherichia coli 1827-70]
 gi|331670659|ref|ZP_08371496.1| DNA helicase II [Escherichia coli TA271]
 gi|137194|sp|P03018|UVRD_ECOLI RecName: Full=DNA helicase II
 gi|43299|emb|CAA27671.1| unnamed protein product [Escherichia coli]
 gi|2367296|gb|AAC76816.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. MG1655]
 gi|85676237|dbj|BAE77487.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K12
           substr. W3110]
 gi|169891130|gb|ACB04837.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12
           substr. DH10B]
 gi|192926639|gb|EDV81268.1| DNA helicase II [Escherichia coli E22]
 gi|194412742|gb|EDX29036.1| DNA helicase II [Escherichia coli B171]
 gi|194417699|gb|EDX33798.1| DNA helicase II [Shigella dysenteriae 1012]
 gi|218354263|emb|CAV00941.1| DNA-dependent ATPase I and helicase II [Escherichia coli 55989]
 gi|238860998|gb|ACR62996.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952]
 gi|257761558|dbj|BAI33055.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli
           O103:H2 str. 12009]
 gi|260451344|gb|ACX41766.1| DNA helicase II [Escherichia coli DH1]
 gi|291321509|gb|EFE60947.1| DNA helicase II [Escherichia coli B088]
 gi|300317898|gb|EFJ67682.1| DNA helicase II [Escherichia coli MS 175-1]
 gi|300420403|gb|EFK03714.1| DNA helicase II [Escherichia coli MS 182-1]
 gi|300524135|gb|EFK45204.1| DNA helicase II [Escherichia coli MS 119-7]
 gi|300528682|gb|EFK49744.1| DNA helicase II [Escherichia coli MS 107-1]
 gi|301075645|gb|EFK90451.1| DNA helicase II [Escherichia coli MS 146-1]
 gi|306906594|gb|EFN37106.1| DNA helicase II [Escherichia coli W]
 gi|309704248|emb|CBJ03596.1| DNA helicase II [Escherichia coli ETEC H10407]
 gi|310334277|gb|EFQ00482.1| DNA helicase II [Escherichia coli 1827-70]
 gi|315063105|gb|ADT77432.1| DNA-dependent ATPase I and helicase II [Escherichia coli W]
 gi|315138390|dbj|BAJ45549.1| DNA-dependent helicase II [Escherichia coli DH1]
 gi|315618489|gb|EFU99075.1| DNA helicase II [Escherichia coli 3431]
 gi|320198480|gb|EFW73081.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli EC4100B]
 gi|323161123|gb|EFZ47041.1| DNA helicase II [Escherichia coli E128010]
 gi|323182585|gb|EFZ67989.1| DNA helicase II [Escherichia coli 1357]
 gi|323380831|gb|ADX53099.1| DNA helicase II [Escherichia coli KO11]
 gi|323934201|gb|EGB30632.1| DNA helicase II [Escherichia coli E1520]
 gi|323938949|gb|EGB35168.1| DNA helicase II [Escherichia coli E482]
 gi|324115724|gb|EGC09659.1| DNA helicase II [Escherichia coli E1167]
 gi|331062132|gb|EGI34054.1| DNA helicase II [Escherichia coli TA271]
 gi|332084961|gb|EGI90143.1| DNA helicase II [Shigella dysenteriae 155-74]
          Length = 720

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|237702822|ref|ZP_04533303.1| DNA helicase II [Escherichia sp. 3_2_53FAA]
 gi|26110983|gb|AAN83167.1|AE016769_282 DNA helicase II [Escherichia coli CFT073]
 gi|91074912|gb|ABE09793.1| DNA helicase II [Escherichia coli UTI89]
 gi|226902993|gb|EEH89252.1| DNA helicase II [Escherichia sp. 3_2_53FAA]
          Length = 738

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 189 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 245

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 246 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 290

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 291 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 326

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 327 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 365

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 366 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 418

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 419 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 478

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 479 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 538

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 539 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 598

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 599 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 624

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 625 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 667


>gi|148212|gb|AAA67609.1| DNA helicase II [Escherichia coli str. K-12 substr. MG1655]
          Length = 720

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|82546164|ref|YP_410111.1| DNA-dependent helicase II [Shigella boydii Sb227]
 gi|81247575|gb|ABB68283.1| DNA-dependent ATPase I and helicase II [Shigella boydii Sb227]
 gi|320185474|gb|EFW60243.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella flexneri CDC 796-83]
 gi|332089046|gb|EGI94157.1| DNA helicase II [Shigella boydii 3594-74]
          Length = 720

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|254039025|ref|ZP_04873076.1| DNA helicase II [Escherichia sp. 1_1_43]
 gi|226838716|gb|EEH70744.1| DNA helicase II [Escherichia sp. 1_1_43]
          Length = 738

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 189 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 245

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 246 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 290

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 291 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 326

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 327 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 365

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 366 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 418

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 419 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 478

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 479 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 538

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 539 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 598

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 599 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 624

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 625 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 667


>gi|323964058|gb|EGB59548.1| DNA helicase II [Escherichia coli M863]
 gi|327250663|gb|EGE62369.1| DNA helicase II [Escherichia coli STEC_7v]
          Length = 720

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDKGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|302869847|ref|YP_003838484.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC
           27029]
 gi|302572706|gb|ADL48908.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC
           27029]
          Length = 803

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 113/713 (15%), Positives = 209/713 (29%), Gaps = 137/713 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  +      +   +         L+        ++  
Sbjct: 100 AAGEMKERVAALVGPRARLMWVSTFHSACVRILRAEHEH-----AGLKSTFSIYDADDSR 154

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+          P K    + +  +  +LK +L           + F       +  A 
Sbjct: 155 RLMQMVARELDLDP-KRYPARGLAAQVSNLKNELVDP--------EEFAGRAKGPNERAL 205

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   ++   LDF+DLI+ T  LL+       +     +   H+L+DE Q
Sbjct: 206 ----AEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH---VAESYRRRFRHVLVDEYQ 258

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ +I+ L                L  VGD  QSIY+F GA  + +L  +R    
Sbjct: 259 DTNHAQYVLIKELVSGTEGIPPAE-----LCVVGDADQSIYAFRGATIRNILEFERDF-- 311

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I L  ++RST  IL   + V     + +     S               
Sbjct: 312 ------TDARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS--------------- 350

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                       D+    Q   + +         +    A  +A  I  ++         
Sbjct: 351 ------------DAGSGEQIVGYVA--------DTEHAEADWVAREIDRLVDDGET---- 386

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  D+ V  R    + +   +         +           +   ++D +A  R
Sbjct: 387 -----RPGDVAVFYRTNAMSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLR 437

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------S 479
            +++ +D +S   +L +P     E     +          +    + A           +
Sbjct: 438 AVVNDDDTVSLRRVLNTPRRGIGERAEACVEALSARDRISFGAALRRAKDAPGISTRAAN 497

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                +  +     +A   +P +    +L       +       +    +D L E ++  
Sbjct: 498 GIAEFVALLDAARELAGTGTPEEVLEAVLTRSGYLAELEESLDPQDAGRVDNLQELVSVA 557

Query: 537 LRN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                        +  ++L   + +  L      I      +   V +MT+HTAKGLE P
Sbjct: 558 REYTERIEALGADDERATLAGFLEQVALVADADQIPSDDPDHQGVVTLMTLHTAKGLEFP 617

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VVFL      VF H                                  L         EE
Sbjct: 618 VVFLTGLEDGVFPH----------------------------------LRSLGDTRELEE 643

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             RL YVG+TRA  +L + +    S             + +      R ++ +
Sbjct: 644 ERRLAYVGITRARQRLYLSRAVTRSAWGAPAYNPPSRFLEELPPELVRWERTE 696


>gi|146300673|ref|YP_001195264.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
 gi|146155091|gb|ABQ05945.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
          Length = 778

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 98/572 (17%), Positives = 185/572 (32%), Gaps = 118/572 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y E   K   +DF+DL++ TN+LL +      +  K      +IL+DE QDT+
Sbjct: 175 LGDIYQQYVERCFKAGAMDFDDLLLKTNELLTRFPE---VLAKYQDRFRYILVDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++R+L++ F          + +  VGD+ QSIY+F GA    +L  ++  +    
Sbjct: 232 HSQYLIVRALSDRF----------QNICVVGDDAQSIYAFRGANINNILNFQKDYE---- 277

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +  L  ++RST +I+   + V    +                           
Sbjct: 278 ----GVVMFRLEQNYRSTRNIVEAANTVMEHNKTKLDKV--------------------- 312

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W        ++  P+ +   S  D+           R +A TI         F    + 
Sbjct: 313 VW------TANEFGPKIKVHRSLTDAEEG--------RFVASTI---------FEQKMQN 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +      +L R    +  +    R       I               IKD++   R ++
Sbjct: 350 QLHNGSFAILYRTNAQSRAMEDALR----KRDIPYRIYGGLSFYQRKEIKDVLCYLRLVI 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCG-------ISKF 481
           + +D+ + + ++  P     +  + K+    +    +++E +               +K 
Sbjct: 406 NPKDEEALIRVINYPARGIGDTTVEKLTIAANHYKRSIWEVMVNIDKIDLKLTSGTKNKL 465

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLR 538
           +  +  I     I Q          +       Q+       E +     ++E LN    
Sbjct: 466 KDFVTMIQSFQVIDQNQDAFYITDHVAKKTGLVQELKKDATPEGMAKIQNIEELLNGIKD 525

Query: 539 N---EQNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               ++    +   L   +E             + + V +MT+H AKGLE P VF+V   
Sbjct: 526 FTEGQKEIDGARGALSEFMEDVALATDLDKDTTDEDRVALMTIHLAKGLEFPHVFVVGME 585

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                     +    +S  EE  RL YV 
Sbjct: 586 EDLFPS----------------------------------AMSMSTRSELEEERRLFYVA 611

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           +TRA  Q  +    +     K         + 
Sbjct: 612 LTRAEHQAYLTYAQSRYRWGKLTDSEPSRFIE 643


>gi|161505541|ref|YP_001572653.1| DNA-dependent helicase II [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866888|gb|ABX23511.1| hypothetical protein SARI_03706 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 720

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETANMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|332084670|gb|EGI89858.1| DNA helicase II [Shigella boydii 5216-82]
          Length = 720

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|300904068|ref|ZP_07121948.1| DNA helicase II [Escherichia coli MS 84-1]
 gi|301303709|ref|ZP_07209830.1| DNA helicase II [Escherichia coli MS 124-1]
 gi|300403948|gb|EFJ87486.1| DNA helicase II [Escherichia coli MS 84-1]
 gi|300841009|gb|EFK68769.1| DNA helicase II [Escherichia coli MS 124-1]
 gi|315254178|gb|EFU34146.1| DNA helicase II [Escherichia coli MS 85-1]
          Length = 720

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 102/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L Q      +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSQAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|299532528|ref|ZP_07045918.1| UvrD/REP helicase [Comamonas testosteroni S44]
 gi|298719475|gb|EFI60442.1| UvrD/REP helicase [Comamonas testosteroni S44]
          Length = 827

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 105/597 (17%), Positives = 190/597 (31%), Gaps = 153/597 (25%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YEE  ++  V+DF +L++ + +LL+       +R+   +   HIL+DE QDT+ +
Sbjct: 191 ELYQLYEEQCQREGVVDFGELMLRSYELLRDD---VHLRHHYQRRFQHILVDEFQDTNKL 247

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q++ ++ L  D       + S  ++ AVGD+ QSIY+F GA    +    R    +    
Sbjct: 248 QYQWLKQLAGDDV--GGRYESAASVIAVGDDDQSIYAFRGARVGNMADFIREFDVK---- 301

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I+L  ++RS ++IL   + + S   N  G +                       
Sbjct: 302 ----NQIKLEQNYRSYSNILDCANALISHNSNRLGKNL---------------------- 335

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +           + +  D           A  +   I  ++  D           
Sbjct: 336 -----RTSQGPGEPVRIYEAPSDLAE--------AAWMVDEIKQLVRND---------GF 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             ++I VL R    + +I         + KI           +   IK  +A  R + + 
Sbjct: 374 TRQEIAVLYRSNAQSRVIESAL----FNSKIPYRVYGGLRFFERAEIKHALAYLRLLENP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD SF+ ++  P        I  +  T R    ++ + +        +K Q  +  I  
Sbjct: 430 HDDTSFLRVVNFPARGIGARTIEVLQDTARSSGTSLSDAVTAVGGTAGTKLQGFVAQIDV 489

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539
           L    Q  +  +    +       + + +   G + I+ L E +                
Sbjct: 490 LREQTQGRTLREIIETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFVTQEGFGRDA 549

Query: 540 ------EQNSYSSLQE---------------------------------------LISEL 554
                 EQ +   L +                                       L + L
Sbjct: 550 VAMPLDEQQNAPQLSQSPVSQGLDPNQPQLDEALKAPAGTAASMVNADTGETLSPLQAFL 609

Query: 555 EQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                        A  + V++MTVH +KGLE   VF+      +F H++           
Sbjct: 610 VHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDAVFIGGVEEGLFPHEN----------- 658

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                    + +   EE  RL YV +TRA  +L +      
Sbjct: 659 -----------------------AMMDRGGLEEERRLAYVAITRARKRLYLSHSQTR 692


>gi|294674328|ref|YP_003574944.1| UvrD/REP family ATP-dependent DNA helicase [Prevotella ruminicola 23]
 gi|294472390|gb|ADE81779.1| ATP-dependent DNA helicase, UvrD/REP family [Prevotella ruminicola
            23]
          Length = 1075

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 133/849 (15%), Positives = 274/849 (32%), Gaps = 90/849 (10%)

Query: 97   KEKLKKSQDEFIKIRDRFNTYKMFKST-LASLTLAKYLNAHYEEAKKKNCVLD--FEDLI 153
               L+  +        ++  ++    T      L   L +  E+  ++    D  F  L+
Sbjct: 309  ASLLQILKCAVEAQEKQWKIFQSANLTLRHLNQL--RLLSSIEKKVREINETDNRF--LL 364

Query: 154  INTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
             +T  LL        S +I  KI  ++ H++IDE QDTS IQW+  + L  +     +  
Sbjct: 365  SDTQQLLHSLIDGSDSPFIFEKIGTQLKHVMIDEFQDTSTIQWQNFKVLLSETMSHDDGS 424

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
            +       VGD KQSIY +   + + +   ++              I  L  ++RST ++
Sbjct: 425  N-----LIVGDVKQSIYRWRSGDWRLLNGIEQQFNSML------MEIKSLSTNYRSTRNV 473

Query: 271  LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
            +   ++ F+   N +  S +                  QL +          + + +   
Sbjct: 474  IDFNNQFFTHAANLEYASLEEL----------NCDERDQLKKAYADVTQQVPDGKPQEGK 523

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
               + LP E     +   +   +S +I             +  KDI +LVR     P+I 
Sbjct: 524  ITIELLPSEEYQEEVLAHMTENVSELISQG----------VSQKDIAILVRYNFHIPIIA 573

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                       +S+V ++ F L    A+  ++   + +L+ +D L+   ++K+ L     
Sbjct: 574  QYFLEHLP--SVSIVSDEAFRLDASSAVCLMIQALQLLLTPDDQLTKAAIVKTWLCTVQG 631

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             ++        + E +            +   H  + +            ++    I   
Sbjct: 632  KEL-------SDNEFMIAGANLDTYLPEAYIAHFDELL--------TLPLYELAEKIYAI 676

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
             +     + R   +    L  F +        + + +Q  ++E E+             N
Sbjct: 677  FE-----LHRLEGQG-AYLCAFYDQLANYVNENTTDIQAFLTEWEESLCKKTIQSDE-TN 729

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGS--QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             +R++++H +KGLE   V +       +  +   I         ND P +PI   Q    
Sbjct: 730  GIRLISIHKSKGLEFDHVIIPFCDWPLEKTTDNIIWCQPNEAPFNDLPIVPIDYSQKAML 789

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
              I      H       +   LLYV  TRA+  L +       N + +       +V   
Sbjct: 790  GTIYEGDYLHEHLQNMVDNLNLLYVAFTRAAKSLYVIGKRGVKNSRSALIELCLPLVAGD 849

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
              + +         +I          +T   E  P +     K       I         
Sbjct: 850  MPDAQLEGMENNDAAIVFSMGSFSVGATEQKEKAPSKNPFLQKSEAVHVAI--------- 900

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
             +         S          E L   ++    G ++H++   I    E      +   
Sbjct: 901  RNFESKVNFRQSNRSRDFIEGDE-LDQQHRYIQAGSVLHEIFSTI--QTEKDIPEALQRL 957

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI 868
              +          + +   + + L +P + +  S      +     I   +   +   R 
Sbjct: 958  QFEGILYDEEMTAEKITTMLRKRLADPRVASWFSP--RWTLFNECTILSVEDGEVKEHRP 1015

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            D++        + ++K  H  P+        + AQ+  Y  +L+    ++++   L YV 
Sbjct: 1016 DRVMTDGNEWIVVDFKFGHPSPE--------YHAQVRRYMDLLQSM-GHQNIKGYLWYVY 1066

Query: 929  EPKVFIIPQ 937
              ++  +  
Sbjct: 1067 SNQIEEVEH 1075


>gi|254476738|ref|ZP_05090124.1| UvrD/REP helicase domain protein [Ruegeria sp. R11]
 gi|214030981|gb|EEB71816.1| UvrD/REP helicase domain protein [Ruegeria sp. R11]
          Length = 786

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 103/552 (18%), Positives = 176/552 (31%), Gaps = 117/552 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
              A Y+   K+   +DF DL+++   + +       +  +  +    I++DE QDT++ 
Sbjct: 195 DFYAQYQTRLKELNAVDFGDLLLHMVTIFQDHPD---VLGQYQRWFRFIMVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYMWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V        G                      +LW
Sbjct: 296 --GAMVVRLEQNYRSTGHILAAAGGVIRGNAARLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + ++     ++D   +       AR I   I  M              +
Sbjct: 333 -------TEAGDGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGMAPV 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + L I+D MA  R ++S 
Sbjct: 374 DLNDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRVVVSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHV 484
           +DDL+F  ++ +P     +     I T  R    ++ E  +      +    G    + +
Sbjct: 430 DDDLAFERIVNTPKRGLGDKAQQTIQTIARANGVSLVEGARLAVESGQIKGKGGKALREL 489

Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           I+ +     +A     +  +   +IL        + +    E    ++ L E +      
Sbjct: 490 IEGLIRWGRLAGDADMTHMELAEVILDESGYTGMWQADKTPEAPGRLENLKELVKALEAF 549

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +         +V IMT+H AKGLE P VFL      +F 
Sbjct: 550 EN--------LQGFLEHVSLIMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 601

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 602 SQRS--------------------------------MDESGLKGLEEERRLAYVGITRAE 629

Query: 660 DQLIICKHSNTS 671
               I    N  
Sbjct: 630 QICTISFAGNRR 641


>gi|310643059|ref|YP_003947817.1| recombination helicase adda [Paenibacillus polymyxa SC2]
 gi|309248009|gb|ADO57576.1| Recombination helicase AddA [Paenibacillus polymyxa SC2]
          Length = 1339

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 126/854 (14%), Positives = 264/854 (30%), Gaps = 108/854 (12%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERF 66
             I  D         S + +    +++ G P              + L Q  +TQ     +
Sbjct: 230  SILADAALSLRGAASLLEQAHETAIQAGGPAPYAMTLQEDAAMVKELLQELETQPWASLY 289

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA- 125
                +    +    +K+     + ++   L+E  KK   +              +   A 
Sbjct: 290  DHFQAASFGKLKPVKKDQTEPALQERVKTLREAAKKMITDMKASLFGRRAEAYLEELHAT 349

Query: 126  ------SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR------YKI 173
                   +         +++ K+   ++DF DL      +L+  D + +         + 
Sbjct: 350  APLMDELVETVIAFGERFQQHKQSKGLVDFGDLEHYCLKILRHPDSTPYKLLPSDAALEY 409

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
              + + +L+DE QDT+ +Q +++R ++ +          P   F VGD KQSIY F  AE
Sbjct: 410  KAQFDEVLLDEYQDTNTVQEDIVRLVSRE---------EPGNRFMVGDVKQSIYRFRLAE 460

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDS 291
            P   L + +    +     +   +I+L  +FRS  +++  V+ VF      +   +  D 
Sbjct: 461  PGLFLNKYQRYGMQ---EQEDGFLIDLARNFRSREEVVDAVNLVFRQIMSVDVAEIEYDE 517

Query: 292  TTTIRHRSSRIGQ-------VGTVQLWEQV-------VSQHDSQCNPQQESWTSYFDSLP 337
               + H +S   +           +L            +    +   +     S    L 
Sbjct: 518  RAWLVHGASYPEKTEQEAASAYAPELLLVDKGGRGLSETLELPEMGDESALQESELAELA 577

Query: 338  QESSASILARRIAYTISNMIGT------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
            +  +A + AR IA  I  + G                R     DI++L+R      +   
Sbjct: 578  ELETAQLEARAIAQRIKELTGDTGQPLLIYDRGLKAMRPAVYGDIVILLRS---ASVWAP 634

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
            L         I   G           ++ +++L   I + + D+    +L+SP+   +ED
Sbjct: 635  LIVEELRLEGIPASGEQTTGFFKATEVEVMLSLLHIIDNPQQDIPLASVLRSPIVGLTED 694

Query: 452  DIFKICTQRHETETV-------------------------------------YEYIQKFA 474
            ++ +I  ++ +                                         +   +   
Sbjct: 695  ELAQIRLEKPDGLFYDALLAAAETEQVDQSVKGTSADVLEMDLFTEDSLSPPHSVHRDDG 754

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFL 533
            N   ++ +  ++ +      A+  S       +L              G++    L    
Sbjct: 755  NTLSARLRSFLRNLDAWRQEARQGSLSALIWNVLEETGYLDWVGGLPGGSQRQSNLRALY 814

Query: 534  NFTLRNEQN-SYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +   + E + S   L   ++ + +              +     VRIMT+H +KGLE PV
Sbjct: 815  DRARQYETSTSNRGLFRFLTFISRLRERGGDLGSISGGTEPDQAVRIMTIHKSKGLEFPV 874

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            VF+  T              +   L   P       +          + +  +     E 
Sbjct: 875  VFIAGTAKMFNQQDLNAPFLMHKELGFGPKYVEEQNRVSYPTLPNLAIRRRSQLELLAEE 934

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             R+LYV +TR  ++LI+         + +             H +  +    L    +  
Sbjct: 935  MRVLYVALTRPREKLIMTGTVKDLASRAAG------WARAKEHTETVLPDYILAAGRSYL 988

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            +W+      H    +  +     +      +         K   +E    +    D + +
Sbjct: 989  DWVGPALIRHPSATSLRKAAGDQEGDYHRLEHMPGADWLFKIVASETLSGSRVNSDREEE 1048

Query: 768  TNLESLLSDNQTFN 781
             + E      +   
Sbjct: 1049 VSAEERQKKTEALR 1062



 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 88/304 (28%), Gaps = 43/304 (14%)

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
              S   +  +    +    ++ + ++    I  DE    + +       P ER       
Sbjct: 1037 SGSRVNSDREEEVSAEERQKKTEALRNVELIELDEESETDIAAALSWTYPYERAGKTAAN 1096

Query: 734  MDEQKIPKKLF------------SPIKNDINEPYILNPSTIDTKG---KTNLESLLSDNQ 778
                ++ + L             S I    + P     S         +           
Sbjct: 1097 TSVTEMKRWLEMQEIGSDDWLNLSSISQQADLPEDCENSDTGGSQLHLRRPKFMGNQRLT 1156

Query: 779  TFNRGLIIHKLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
               RG + H L+  +     +     +        +   L    E  +    I R   + 
Sbjct: 1157 PTERGTVYHTLMLHLPLDGVMSAEIIEETKARLLNQRILLDVHAEALD-TDKILRFFSSE 1215

Query: 836  MMTTAM-SCDSYSEVSVSGKINCPK----------------------KDIIISGRIDQIS 872
            + +  + S     E+  +  +                            ++++G ID + 
Sbjct: 1216 LGSRMLRSSRIQRELPFTYTMRATDYWNHSLPVMLPEQKTVTEGGQDDKVLMNGIIDCLF 1275

Query: 873  ISQQNIFIFEYKTHHHVP-QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
             + + + + +YKT      + + H+   +  QL +Y +++++   NK     L ++   +
Sbjct: 1276 ETPEGLVLLDYKTDRVSEYRTLSHLTDQYRFQLELYARVIEEITGNKVAEKWLYFIEAEE 1335

Query: 932  VFII 935
               +
Sbjct: 1336 SVRL 1339


>gi|312114573|ref|YP_004012169.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219702|gb|ADP71070.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100]
          Length = 793

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 113/657 (17%), Positives = 201/657 (30%), Gaps = 126/657 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y++  K    +DF DL++    L +       +  +  +   +I++DE QDT++ 
Sbjct: 202 ELYAAYQKRLKDLNAVDFGDLLLENIRLFQNNPD---VLKQYHRWFTYIMVDEYQDTNVA 258

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +            R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 259 QYLWLRLLAQ----------GSRNICCVGDDDQSIYGWRGAEVDNILRFEQDFP------ 302

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL    K+ +      G +                     L 
Sbjct: 303 --GAHVIRLEQNYRSTPHILGAASKLIANNAGRLGKT---------------------LR 339

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +      +    +  W                AR  A  I                 I
Sbjct: 340 TGIDGADMGEKLAVRGIWDD-----------DEEARLAAEDIDRFRREG----------I 378

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              DI +LVR              +     +           +   IKD +A    + + 
Sbjct: 379 ALNDIAILVRASFQMRAFEDRFVTM----GMPYRVIGGPRFYERQEIKDAIAYLEVLQNP 434

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQHV 484
             DL F  ++  P     E  +  I    R E  +++   ++       K       + +
Sbjct: 435 AADLRFERIVNVPKRGLGEQAVQTIFGHARAEGLSLFHAARQITETEELKPAARRSLRAL 494

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
                    +       +   LIL      + +      +     + L E + F  + + 
Sbjct: 495 TDCFERWRSLMGAMPHTELAELILDESGYTEMWQKDKSPQAQTRLENLKELIRFMDQFDN 554

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                   L + LE     +    +A+ + V +MT+H AKGLE  VVFL      +F H+
Sbjct: 555 --------LAAFLEHVSLVMDADQAADGDRVSLMTLHGAKGLEFGVVFLPGWEEGLFPHQ 606

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             +    +   EE  RL YVG+TRA  +
Sbjct: 607 R--------------------------------ALDENGQEGLEEERRLAYVGITRAKRR 634

Query: 662 LIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
           L I    N     + + +    + D +       +                         
Sbjct: 635 LTISFAQNRRVHGSWQSALPSRFLDELAVEHAELKIESGGYGYGRFGAANGGYGASRFDE 694

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
           PE +P + EE            K+  +  +++        P   +  G+   +S+  
Sbjct: 695 PEVSPFDYEERG------TPGWKRAQTNWRSEGAAKNRQRPVPREIDGELVAKSVAE 745


>gi|315293210|gb|EFU52562.1| DNA helicase II [Escherichia coli MS 153-1]
          Length = 699

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 150 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 206

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 207 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 251

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 252 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 287

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 288 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 326

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 327 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 379

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 380 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 439

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 440 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 499

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 500 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 559

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 560 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 585

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 586 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 628


>gi|300939966|ref|ZP_07154595.1| DNA helicase II [Escherichia coli MS 21-1]
 gi|300455228|gb|EFK18721.1| DNA helicase II [Escherichia coli MS 21-1]
 gi|315284765|gb|EFU44210.1| DNA helicase II [Escherichia coli MS 110-3]
          Length = 695

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 146 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 202

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 203 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 247

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 248 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 283

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 284 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 322

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 323 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 375

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 376 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 435

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 436 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 495

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 496 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 555

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 556 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 581

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 582 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 624


>gi|300985670|ref|ZP_07177557.1| DNA helicase II [Escherichia coli MS 45-1]
 gi|300408054|gb|EFJ91592.1| DNA helicase II [Escherichia coli MS 45-1]
          Length = 699

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 150 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 206

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 207 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 251

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 252 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 287

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 288 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 326

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 327 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 379

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 380 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 439

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 440 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 499

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 500 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 559

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 560 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 585

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 586 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 628


>gi|300979415|ref|ZP_07174544.1| DNA helicase II [Escherichia coli MS 200-1]
 gi|300308006|gb|EFJ62526.1| DNA helicase II [Escherichia coli MS 200-1]
          Length = 698

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 149 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 205

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 206 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 250

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 251 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 286

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 287 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 325

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 326 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 378

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 379 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 438

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 439 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 498

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 499 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 558

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 559 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 584

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 585 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 627


>gi|167622483|ref|YP_001672777.1| DNA-dependent helicase II [Shewanella halifaxensis HAW-EB4]
 gi|167352505|gb|ABZ75118.1| DNA helicase II [Shewanella halifaxensis HAW-EB4]
          Length = 721

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 95/586 (16%), Positives = 189/586 (32%), Gaps = 116/586 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+++  +  ++DF ++++  ++L   +     I         HIL+DE QDT+ IQ
Sbjct: 173 IYQIYQDSCDRAGLVDFAEILLRAHELWLNKPH---ILDHYQDRFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            S   +  VGD+ QSIY + GA+ + + +             
Sbjct: 230 YAWIRVLAG----------STANVMIVGDDDQSIYGWRGAQVENLHKFLADFPA------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RS+ +IL   +++ +   +  G                       LW 
Sbjct: 274 --AQTIRLEQNYRSSGNILNASNQLIANNPDRMGKK---------------------LW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +       F+ + +       AR I   I++                 
Sbjct: 310 ------TDDKDGEPIGLYCAFNEMDE-------ARFIVGRITDWQDEGGKLE-------- 348

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            I+          +   IKD M   R I ++ 
Sbjct: 349 --DCAILYRSNAQSRVLEEAL----LHKGIAYRIYGGLRFFERQEIKDAMGYLRLINNKN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P     +  +  I  T R +  T++E   +            +  +  +
Sbjct: 403 DDAAFERVVNTPTRGIGDRTLEIIRTTARQQEMTLWEASLRLIEEKVLNGRAANAVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQ 541
             I  +   +   S       ++     +  + +    +     + L+E +         
Sbjct: 463 DLIIAMRMDSDELSLQRTTDHVIQTSGLKAMYEAEKSEKARARVENLEELVTAARSFVMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL + L        +       + V++MT+H+AKGLE P+VF+      +F  
Sbjct: 523 EEIEDMGELNAFLSHAALEAGEGQADEFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                           +E  RL YVGMTRA  
Sbjct: 583 QMAIDEG----------------------------------DRLDEERRLCYVGMTRAMQ 608

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +L I    +     + +       V +      +  +++   S   
Sbjct: 609 KLYITYAESRRIYGRESFARPSRFVKEIPEQYVQEIRMRTQVSAPA 654


>gi|116494556|ref|YP_806290.1| superfamily I DNA/RNA helicase [Lactobacillus casei ATCC 334]
 gi|116104706|gb|ABJ69848.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei ATCC 334]
          Length = 751

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 120/699 (17%), Positives = 212/699 (30%), Gaps = 133/699 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +A       E+ +L+          P K    + I       K +L   Q          
Sbjct: 110 RAFTIADPAEQLTLVKHILADFNLDP-KRYDPKSILGAISSAKNELVDPQ---------- 158

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            TY   ++      +   + A Y++  + +  LDF+DLI+ T  L +K            
Sbjct: 159 -TYANEQANSPFTKVVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKD---KETLAFYQ 214

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++  +I +DE QDT+  Q++++  L E +            L  VGD  QSIY + GA  
Sbjct: 215 RKFRYIHVDEYQDTNEAQYQLVHMLAEGY----------HNLCVVGDADQSIYGWRGANM 264

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + +L  K+   K          +I L  ++RST  IL+  + V    +N Q  +      
Sbjct: 265 QNILDFKQDYPK--------AQVILLEQNYRSTKTILSAANDVIQNNQNRQAKT------ 310

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                          LW       +++   +   + +      +   A  + RRI   I+
Sbjct: 311 ---------------LW------TENREGDKITYYRA----QSETDEAIFVIRRIEAEIA 345

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           +                +  D  +L R    +  I            I           D
Sbjct: 346 DNHR-------------KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYD 388

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK- 472
              I+D +A  R +++ EDD+SF  ++  P        + K+         ++ E     
Sbjct: 389 RKEIRDALAYFRLVVNPEDDMSFNRIVNEPKRGIGNTSVEKLEAFANEHDWSLLEAAANA 448

Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-- 526
                A     +     K I +L    +  +       IL          +    E    
Sbjct: 449 ELSPIAGKARGQLAKFGKMIQQLGTRRKDLNVTKMMQAILEDSGYLSTLRAAHNLEADTR 508

Query: 527 -DVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            + L+E L+ T         E        + ++EL             +  EV +MT+H 
Sbjct: 509 IENLEELLSVTQGFDSRYQPENEDSDIFVDFLAELALLSDQD--DVEEDAQEVTLMTLHA 566

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFLV     +F                                         
Sbjct: 567 AKGLEFPVVFLVGMEEGLFPLSRASMDESELEEERRL----------------------- 603

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                       YVG+TRA  +L +          +         + +   +   V    
Sbjct: 604 -----------AYVGITRAKQKLYLSNAYGRMLYGQRQNNPASRFIEEINPDLLEVIGTT 652

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
              S +       + +   P +    ++      +    
Sbjct: 653 QPKS-DIPFINRTDRAFSSPYSRHAAQKTATPVTVQAAP 690


>gi|320178104|gb|EFW53084.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella boydii ATCC 9905]
          Length = 720

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|313202687|ref|YP_004041344.1| ATP-dependent DNA helicase pcra [Paludibacter propionicigenes WB4]
 gi|312442003|gb|ADQ78359.1| ATP-dependent DNA helicase PcrA [Paludibacter propionicigenes WB4]
          Length = 769

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 93/600 (15%), Positives = 178/600 (29%), Gaps = 121/600 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L K +   Y    K+   +DF+DL++ TN L +    +     K  Q   +IL+DE QDT
Sbjct: 175 LMKDIYQIYCNRCKQADAMDFDDLLLQTNILFRNHPDT---LQKYQQLFGYILVDEYQDT 231

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ +++ L E              +  VGD+ QSIYSF GA    +L+ K   +   
Sbjct: 232 NFAQYLIVKKLAEQ----------HEKICVVGDDAQSIYSFRGANIDNILKFKSSYKN-- 279

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   + +L  ++RST  I+   + +          +                    
Sbjct: 280 ------ARVFKLEQNYRSTQTIVNAANSLIDKNAQQIRKT-------------------- 313

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                   +   +       +T + +              +A  IS++            
Sbjct: 314 ----VFSEKETGKPIKVLSVFTDFEEGFI-----------VANNISDL---------RFS 349

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                +DI +L R    + ++    R       I               IKD++A  R +
Sbjct: 350 DKYHYQDIAILYRTNSQSRVMEEALR----KQGIPYRIYGGLSFYQRKEIKDVIAYCRLV 405

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFANCGIS-------K 480
            +  D+ +   ++  P     +  + K+         + +E +       +        K
Sbjct: 406 CNPNDEEALKRIINYPARGIGDTTVNKLIECSQLHAVSAWEVLSDMLKYNLPVNAGTANK 465

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
                  I          + +D    ++          +    E     + + E L    
Sbjct: 466 LAQFRSMIDVFAEQITTQNAYDLANSVVKVSGVIADTYTDHSPESMSRQENVQELLKAIH 525

Query: 538 RNEQNSYSS------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
              +   ++      L + +SE+             + ++V +MTVH AKGLE   VF+V
Sbjct: 526 EFCETKQANGEPTALLPDFLSEVSLLTDQD-TDKETDKDKVTLMTVHAAKGLEFKAVFIV 584

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++F      +                                              
Sbjct: 585 GMEEELFPSPFCTQSERELEEERRL----------------------------------F 610

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YV +TRA +   I    +     K+N       + D       +           ++W  
Sbjct: 611 YVALTRAEELCYISYAKSRFKNGKTNFSNPSRFIKDIDEQYLDMPAEAKPKQARINDWDD 670


>gi|188534866|ref|YP_001908663.1| exonuclease V subunit beta [Erwinia tasmaniensis Et1/99]
 gi|188029908|emb|CAO97792.1| Exodeoxyribonuclease V beta chain [Erwinia tasmaniensis Et1/99]
          Length = 1178

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 138/963 (14%), Positives = 301/963 (31%), Gaps = 143/963 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             K  W         I           +  +    + +   +Q++             L +
Sbjct: 233  LKRAWLAADNLQQLIEASGIDRRSYNSKHLPNWLEKITLWAQSET----LDYEVVKELER 288

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
                     T++       L +++     E + +RD      + +     +         
Sbjct: 289  FGQRVLLEKTKKGEPPRHPLFDRIDDFLAEPLSLRDLVIARALQQ-----VRFVT----- 338

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
             ++ K+ +  L F+DL+   +  L++      +   I Q     LIDE QDT   Q+ + 
Sbjct: 339  -QQEKRLHAQLGFDDLLGRFDAALQQPG-GEMLASAIRQRYPVALIDEFQDTDPQQYRIF 396

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            R+L                L  +GD KQ+IY+F GA+    ++ +       T       
Sbjct: 397  RTLYR--------RQPGSALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYT------- 441

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L  ++RS+  ++  V+++F   +N    SE     I+  +        VQ       
Sbjct: 442  ---LETNWRSSPAMVDGVNQLFLKQKNPFLFSEIPFVHIKPAAPNDSLKFNVQ------- 491

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-----NGKKRVI 371
                +  P    W    D +        +AR+ A  I   +             GK+R +
Sbjct: 492  ---GEVQPALTFWLQPGDGVGVSDYQQFMARQCAAEICRWLSAGQRGEALIGKAGKQRPV 548

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            QA DI VLVR R +  ++      L      SV  ++R  +      ++++ L + +L+ 
Sbjct: 549  QASDITVLVRSRSEAAVMREAFNALTIP---SVYLSNRDSVFTTPEAREMLWLLQAVLAP 605

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            E +      L + LF      +  +       + + +    +    +   + V+  + EL
Sbjct: 606  EQERILRSALATSLFGVDALALDALTQDERAWDALVDEFVDYRQRWLK--RGVLPMLREL 663

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
            +              +L +  G ++            L E L        + ++ ++ L 
Sbjct: 664  MMKR------AIAENLLASDSGERRLTDLL------HLGELLQEASATLDSEHALVRWLA 711

Query: 552  SELEQYPPTIKRAH---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
             ++EQ    +        ++ + V+I+T+H +KGL+ P+V+L    +   +   +     
Sbjct: 712  QQVEQPDGQVANQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFVANFREADNAVYHDRQ 771

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
              +   D                  + I+  ++    E  RLLYV +TR+     +    
Sbjct: 772  TFTALLDLQQ-------------SEESIELAEQERLAEDLRLLYVALTRSVFHCSVGIAP 818

Query: 669  --NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK------DEWIAYEWSTHHPE 720
                + +K+ N       +       E      L  ++            A E      +
Sbjct: 819  LIKGTRKKEGNSDLHRSALGYLVQQGEPADASGLLAALQALNSDATALVTAAEADAAPWQ 878

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTIDTKGKTNL 770
                ER+    + +          +              ++     ++ +   +  +  L
Sbjct: 879  GPQAERQILSSRALPRSPRDSWRVTSYSGLQQHGSAGALELLPRLDVDAAGEASGEQVPL 938

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
             +  +  +    G  +H L + +        +         + +    +    +   I R
Sbjct: 939  LTPHTFPRGAGPGTFLHGLFETLEFSAPLDEEWLSQQL---SGQGLGEEWTPVMRDWIDR 995

Query: 831  LLENPM------MTTAMSCDSYSE----VSVSGKINCPKKDIIIS--------------- 865
            +L+ P+      +    +     E    + +S  +     D ++                
Sbjct: 996  ILQTPLNETGVSLHQLPAQARRVELQFYLPISRLLTAEALDRVVRQDPLSMACPPLDFYQ 1055

Query: 866  ------GRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIAQLSIYEKI 910
                  G ID +   Q   ++ +YK++                    + +  Q  +Y   
Sbjct: 1056 VQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTQQAMAQAMQAHRYDLQYQLYTLA 1115

Query: 911  LKD 913
            L  
Sbjct: 1116 LHR 1118


>gi|325203353|gb|ADY98806.1| DNA helicase II [Neisseria meningitidis M01-240355]
          Length = 735

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 102/582 (17%), Positives = 192/582 (32%), Gaps = 118/582 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++  ++  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICQREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +                +FAVG
Sbjct: 204 QSNEI---LRQHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNAA----------VFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                AR I      +                  +I VL R    + +I           
Sbjct: 333 -----ARFIVDETKALEREGWDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IK  +A  R  ++ +DD + + ++  P        +  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E           A    +K    ++ I  L +     S  +    IL      + + ++
Sbjct: 434 NEQGITLWQAACNAGAKAAKVVAFVRLIEALRNQVGQLSLSEIIVGILKDSGLTEHYRTQ 493

Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566
            G   + +D LDE +N  +    E +++  L E         +++ L        +    
Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFEILPENISDDPAFPILAFLSNATLESGENQAG 553

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A    V++MTVH AKGLE   VFL       F  +                         
Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                        ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|254805722|ref|YP_003083943.1| DNA helicase II [Neisseria meningitidis alpha14]
 gi|254669264|emb|CBA08172.1| DNA helicase II [Neisseria meningitidis alpha14]
          Length = 735

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 185/549 (33%), Gaps = 118/549 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y++  ++  V+DF +L++ + ++L+  ++   +R       NHIL+DE QDT+ +Q+
Sbjct: 177 YAEYDKICQREGVVDFAELMLRSYEMLQSNEI---LRQHYQNRFNHILVDEFQDTNKLQY 233

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ +                +FAVGD+ QSIY F GA    +          A     
Sbjct: 234 AWLKLMAGGNAA----------VFAVGDDDQSIYRFRGANVGNMTALMEEFHIDAP---- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               ++L  ++RS  +IL   + V    +   G +                         
Sbjct: 280 ----VKLEQNYRSVGNILAAANAVIENNDERLGKNL------------------------ 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + D++   +   ++++ D           AR I      +                 
Sbjct: 312 ---RTDAEAGDKIRYYSAFTDLEE--------ARFILDETKALEREGWDLD--------- 351

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R    + +I            I           +   IK  +A  R  ++ +D
Sbjct: 352 -EIAVLYRSNAQSRVIEQSL----FRSGIPYKIYGGLRFYERQEIKHALAYLRLAVNPDD 406

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D + + ++  P        +  + T  +E           A    +K    ++ I  L +
Sbjct: 407 DNALLRVINFPPRGIGARTVENLQTASNEQGITLWQAACNAGAKAAKVVAFVRLIEALRN 466

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE 549
                S  +    IL      + + ++ G   + +D LDE +N  +    E +++  L E
Sbjct: 467 QVGQLSLSEIIVGILKDSGLTEHYRTQKGDNQDRLDNLDELVNAAIEFKPEDSNFEILPE 526

Query: 550 ---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                    +++ L        +         V++MTVH AKGLE   VFL       F 
Sbjct: 527 NISDDPAFPILAFLSNATLESGENQAGVGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                      ++   EE  RL+YV +TRA 
Sbjct: 587 SEMSL----------------------------------AERGGLEEERRLMYVAITRAR 612

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 613 KRLYITMAQ 621


>gi|309796243|ref|ZP_07690653.1| DNA helicase II [Escherichia coli MS 145-7]
 gi|308120125|gb|EFO57387.1| DNA helicase II [Escherichia coli MS 145-7]
          Length = 720

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 99/553 (17%), Positives = 179/553 (32%), Gaps = 116/553 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTS 671
             +L +       
Sbjct: 607 MQKLTLTYAETRR 619


>gi|326629622|gb|EGE35965.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 720

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPKRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|324014655|gb|EGB83874.1| DNA helicase II [Escherichia coli MS 60-1]
          Length = 672

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 123 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 179

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 180 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 224

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 225 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 260

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 261 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 299

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 300 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 352

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 353 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 412

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 413 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 472

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 473 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 532

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 533 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 558

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 559 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 601


>gi|325109169|ref|YP_004270237.1| exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305]
 gi|324969437|gb|ADY60215.1| Exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305]
          Length = 1168

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 145/895 (16%), Positives = 301/895 (33%), Gaps = 96/895 (10%)

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--RDRFNTYKMFKSTLASLTLAKYLN 134
            +   + +    E++ +  +  E+L+K     I +   D        +  + +L + + + 
Sbjct: 272  QGARENHWPDPEVHHQVKEACERLRKEVGALIDVLTLDEEAVRLAARYGMQALRITESVV 331

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
            A YE+AK+   +    D      +L          + ++ +    +L+DE QDT  +Q E
Sbjct: 332  AAYEQAKQDRAM---LDFDDLLLNLRDLLQTRPAAKEQLQKSTKFLLLDEFQDTDPVQSE 388

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++R++  D             LF VGD KQSIY F  A+P    + +    ++       
Sbjct: 389  IVRAICGDRLTSGG-------LFLVGDVKQSIYRFRRADPTVFRQLRSEIPQKGQ----- 436

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
               + L  +FRS   +L  V+ +F      +  + ++     +                 
Sbjct: 437  ---LALTKNFRSQQGVLDFVNFLFGPAMGEEYDALEAFDQTDYPP--------------- 478

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK------ 368
                 ++      +            +  + A  IA  I  ++   T     +       
Sbjct: 479  -----AEKTEFLFANDPELTKPSAGEARVVEAEWIAARIEELLSDPTPRVRKRDKATGEV 533

Query: 369  --RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R ++  DI VL R   +  L     R       +               + D++ L R
Sbjct: 534  TLRRVEPGDITVLFRAFSNLGLYEDALR----KRHLDYYVVAGRAFFAQQEVFDMVNLCR 589

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY---EYIQKFANCGISKFQH 483
            ++    D+ + V +L+SPLF +++D I ++  Q  E        E          S  + 
Sbjct: 590  YLDDDTDETTLVGVLRSPLFGWNDDTIMQMGRQFGEFSPALLSDEMPAGVTTDQASAVKS 649

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQN 542
              + + EL+               +         ++   G   +  L + L+     +Q 
Sbjct: 650  ARRVLRELLGRRLSSGIGPLLRFAVEQTAYDAALMTEFLGERKVANLRKLLDMADDFDQV 709

Query: 543  SYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +  + E    L     E+    +   H  + N VR+MTVH +KGLE PVVF+ D     
Sbjct: 710  GFLGMSEFADRLLESISEEAKEELAATHPESGNVVRLMTVHQSKGLEFPVVFVADVNR-- 767

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
               ++     ++  +           +++ +N  +           Q E  RL YV  TR
Sbjct: 768  -PSRNNTDTAVLSPVLGPLLGLPRGAETEQKNPGMMMHSHAEGLEDQAESIRLFYVATTR 826

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A+D LI+  + +   +   +        +D         ++         E         
Sbjct: 827  AADLLILSAYFDEETKASGSWMKLLQERFDLQTGLPHGDQLLGQTQQAGIERDRIPRIAV 886

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFS-----------PIKNDINEPYILNPSTIDT-- 764
              E   + + + + + +        L +           P++ D       + S +++  
Sbjct: 887  RSEIPQVAKPKKVPRKLKLADWDDVLATTEPVAPPAIALPLEPDRAYRERFSVSELESVD 946

Query: 765  -----------KGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKNFITSYCTKN 812
                              + +   +    G ++H  L+     LP      FI    T  
Sbjct: 947  SSFHSAMVTSGSTSNEASAAVRLREAELLGNLLHAALEQFDPALPPDNLSEFIERLATGF 1006

Query: 813  AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPKKDI--IISGRID 869
            +        +  +    +LL++  +    +    Y E     + + P+      I+G +D
Sbjct: 1007 SDYIAPDLRETAVSRFRQLLDSDFILELKTAGRLYRETEFLLRWSRPEVGRPAFIAGTVD 1066

Query: 870  QISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLV 921
             +    +    + +YKT  ++P E   +      Q+++Y K ++     P +S+ 
Sbjct: 1067 CLLQDSEGAWHLIDYKTG-NLPAEPSAVVDKFGLQMTLYAKAIEQLTGNPPRSIR 1120


>gi|251810340|ref|ZP_04824813.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251806148|gb|EES58805.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 1224

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 110/600 (18%), Positives = 209/600 (34%), Gaps = 47/600 (7%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            K   L  K+K           + +  ++         + + +   +   K+   +LDF 
Sbjct: 313 DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 372

Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           D       +L   D   + I     +    IL+DE QDT+ +Q +++  +       K  
Sbjct: 373 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 425

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 LF VGD KQSIY F  A+P   + +          +G     I+L  +FRS  +
Sbjct: 426 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 482

Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           +L+  + +F     E    +S D    +   +        VQL   V +  ++       
Sbjct: 483 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 535

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385
                       + +   A  I   + ++I    ++    G+ R    KDI++L R    
Sbjct: 536 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 586

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                   +    +  I    N +    +   ++ +++  R I +   D+  V +++S +
Sbjct: 587 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 642

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
           + F+E+++ +I       +  Y+ I+ +            K    I+ I +  + +Q   
Sbjct: 643 YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 702

Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
            +             Q F    G +     L    N  +  E +S+  L + I  +++  
Sbjct: 703 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 762

Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              K     N      N VR+MT+H++KGLE P V       +         + +     
Sbjct: 763 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 822

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                          +          +K    E  RL+YV +TRA +QLI+         
Sbjct: 823 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 882



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 75/225 (33%), Gaps = 20/225 (8%)

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                   ++ ++L +   N   +        + +  +    +     +    G ++H ++
Sbjct: 1002 PSKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVM 1061

Query: 791  QVIFTLPEHKRKNFITSYCTKNAK--LWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSY 846
            Q +    +   K+ +  Y  +     L      +++ +  I   ++ P+      + + Y
Sbjct: 1062 QHLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVY 1121

Query: 847  SEVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE- 894
            +E+           +    +D+ II G ID I  S    +  +YKT          + E 
Sbjct: 1122 TELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEI 1181

Query: 895  --HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
               +   +  Q++ Y   L+     + +   L +     +  I  
Sbjct: 1182 GNQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1224


>gi|197247460|ref|YP_002148876.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197211163|gb|ACH48560.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 720

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|313205710|ref|YP_004044887.1| uvrd/rep helicase [Riemerella anatipestifer DSM 15868]
 gi|312445026|gb|ADQ81381.1| UvrD/REP helicase [Riemerella anatipestifer DSM 15868]
          Length = 779

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 101/656 (15%), Positives = 196/656 (29%), Gaps = 131/656 (19%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             A++ L   +   Y E   KN  +DF+DL++ TN+LL +      +  K      +IL+
Sbjct: 168 ARANMKLIGQIYQKYVEVCFKNGAMDFDDLLLRTNELLTRFPE---VLAKYQDRFRYILV 224

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q+ ++++L   F            +  VGD+ QSIYSF GA    +L  K+
Sbjct: 225 DEYQDTNHSQYLIVKALASKFE----------NICVVGDDAQSIYSFRGANIYNILNFKK 274

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                          + L  ++RST +I+   + V +  +     +  S           
Sbjct: 275 DYP--------DAVTVSLEQNYRSTQNIVNAANVVIAKNQQQFKKNVFSA---------- 316

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                            ++   + + + S  D+          A  +A  I  +  +   
Sbjct: 317 -----------------NEEGEKLKVYRSLSDADE--------ANFVAANIWELHNSQQR 351

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                       +  +L R    T       R       I               +KDL+
Sbjct: 352 M---------FNEFAILYRTNSQTRAFEDALR----RKNIPYRVYGGLSFYQRKEVKDLL 398

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI--- 478
           A  R ++++ D  +   ++  P+    E    K+      +  ++ + +           
Sbjct: 399 AYLRLLVNENDAEALTRIINYPVRGIGETTQNKLIVYADGQGLSLAQVLSDLPFHTPRLG 458

Query: 479 ------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
                 +K     + I     + +  + +     +       +        E    ++ +
Sbjct: 459 LNNSALNKLNDFWQMIKAFQVMLKTENAYTVAMEVAKRSGLIKNLKDDQTPEGISRLENI 518

Query: 530 DEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            E +N            +   +SL   +  +     T  +    + + V +MT+H +KGL
Sbjct: 519 QELMNSMQGFIEEQQQLEEGDASLSNFLENIALSADTQDK-PDGSEDMVSLMTIHLSKGL 577

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVV LV     +F                                             
Sbjct: 578 EFPVVHLVGLEENLFPSFMSSSSREELEEERRL--------------------------- 610

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
                   YV +TRA  Q  +    +     K         + +            L  S
Sbjct: 611 -------FYVALTRAEKQAYLSYAVSRFQWGKITDSEPSRFLSEIDAQYLD----FLNAS 659

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
           + +         ++  ++TP            ++       +       EP  L P
Sbjct: 660 MERHFVNHSGIKSNIFDDTPSAPIAF----KKKEPKKTLNRAETSLQPKEPKKLKP 711


>gi|300021793|ref|YP_003754404.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523614|gb|ADJ22083.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 818

 Score =  280 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 106/581 (18%), Positives = 179/581 (30%), Gaps = 120/581 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L A Y+   K     DF DL++    L ++      +     +   +IL+DE QDT++
Sbjct: 230 AALYAAYQARLKDLNACDFGDLLLECIRLFREHPD---VLADYHRRFRYILVDEYQDTNV 286

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +              +  VGD+ QSIY + GAE   +LR ++        
Sbjct: 287 AQYLWLRLLAQGC----------PNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 331

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I L  ++RSTA+IL     + +      G +                      
Sbjct: 332 ---GAKVIRLERNYRSTANILAAASGLIAKNAGRLGKTLF-------------------- 368

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                          +    +++D   +       AR I   I                 
Sbjct: 369 --------TDGSAGSKIGVANFWDDEAE-------ARAIGEDIEQFQRAQE--------- 404

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +  DI VLVR       I      L     +           +   IKD +A    I +
Sbjct: 405 -KLNDIAVLVRASSQMRAIEDRFITL----GLPYRVIGGPRFYERQEIKDAIAYFDVIAN 459

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483
             +DL F  ++  P     +  I +I    R +   +Y+  ++       +N        
Sbjct: 460 SSNDLKFERIVNVPKRGLGDTSIKRIHELARVQGVPLYQAAREIVETDELSNKARKSLGD 519

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
           +++               D   L+L        + +    +     + L E + F    E
Sbjct: 520 LMQAFERWRGNLDRIRHTDLAELVLDESGYTAMWQADKSPQAQTRLENLKELVRFMHDFE 579

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L   LE     +     ++ + V +MT+H AKGLE  +VFL      +F H
Sbjct: 580 T--------LQGFLEHVSLVMDADQGSDGDRVSLMTLHAAKGLEFGIVFLPGWEEGLFPH 631

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       K+  EE  RL YVG+TRA  
Sbjct: 632 QRSLD--------------------------------ESGKAGLEEERRLAYVGLTRARR 659

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           +  I    N               V +       V + ++ 
Sbjct: 660 RAKISFAQNRRTHGLYQSALPSRFVDELPEATVDVIESEMP 700


>gi|225010856|ref|ZP_03701324.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
 gi|225005064|gb|EEG43018.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
          Length = 773

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/680 (15%), Positives = 214/680 (31%), Gaps = 127/680 (18%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTL--------AKYLNAHYEEAKKKNCVLDFEDL 152
           K+ Q+     ++   T K + +    L             +   Y +   K   +DF+DL
Sbjct: 138 KQIQNRISSYKNSLITVKAYHNNPDLLEADAMAKRPQTGAIYKAYVDRCFKAGAMDFDDL 197

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           ++ TN+LL +      +  K      +IL+DE QDT+  Q+ ++++L++ +         
Sbjct: 198 LLRTNELLTRFPE---VLMKYQNRFKYILVDEYQDTNHSQYLIVKALSDRY--------- 245

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
            + +  VGD+ QSIYSF GA    +L  ++   +         +   L  ++RST  I+ 
Sbjct: 246 -QNICVVGDDAQSIYSFRGANIDNILNFQKDYDQ--------VAQYRLEQNYRSTDTIVK 296

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
             + + S   N                      G  +L     S  D++           
Sbjct: 297 AANSIISNNTNQLDKVV----------WTSNDPG--ELITVHRSPTDAEEG--------- 335

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                         R +A          +I     +  +      VL R    +  I   
Sbjct: 336 --------------RFVA---------GSILETKMQEQLPNSSFAVLYRTNSQSRAIEDA 372

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R       I+              IKD++A  R +++ +D+ +   ++  P     +  
Sbjct: 373 LR----KRDIAYRIFGGLSFYQRKEIKDVLAYLRLVINPKDEEALKRIINFPARGIGQST 428

Query: 453 IFKICTQRHE-TETVYEYIQKFANCGIS-------KFQHVIKYIHELIHIAQFCSPHDFF 504
           + K+    +    +++E ++      +        K +  +  I     + +        
Sbjct: 429 VDKLVVAANHYGRSIFEVMEHLDTIPLQINSGTKRKLEDFVTMIKSYQVLNETADAFVLS 488

Query: 505 TLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN---EQNSYSSLQELISELEQYP 558
             +        +F      E    ++ ++E LN        +Q    +   +   LE   
Sbjct: 489 EHVAKKAGLLLEFKKDGTPEGIAKMENIEELLNGIKDFVEGQQELADATGGIAEFLEDVS 548

Query: 559 PTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                     + + V +MT+H AKGLE PVV++V     +F                   
Sbjct: 549 LATDLDKEVGDEDRVALMTIHMAKGLEFPVVYVVGMEEDLFPS----------------- 591

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                             +    +S  EE  RL YV +TRA  +  +          K  
Sbjct: 592 -----------------AMSMNTRSELEEERRLFYVALTRAEKKAYLTYAQTRYRWGKLV 634

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  + +   +   + ++ + +   K    A  +           +  +I      +
Sbjct: 635 DAEPSRFIEEIDDSFLDM-QVPIDSYRYKPMIDADIFGDIDKSKLRQTKPVSIAPPSSFR 693

Query: 738 KIPKKLFSPIKNDINEPYIL 757
               +L    K   +    +
Sbjct: 694 PKENQLRKLRKIKPDLSNPI 713


>gi|297571848|ref|YP_003697622.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932195|gb|ADH93003.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 836

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 121/804 (15%), Positives = 229/804 (28%), Gaps = 143/804 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   L  +      S  +      + T +      A  ++ +       +  
Sbjct: 112 AAKEMRERLEGLLGDVARRMWISTFHSACVRILRTEHK-----ALGMRSSFTIYDAADSA 166

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+      ++    K    + +++K  DLK  +           DR +           
Sbjct: 167 RLMKIVAQEEQIDI-KAFSPKMLSRKVSDLKNSMVTVAQAKGHAIDRDD----------- 214

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +     A Y+   +    +DF+DLI+ T  LL+       I     +   H+L+DE Q
Sbjct: 215 -QVIAQAYAGYQRRLRAANAVDFDDLIMLTVGLLRDNPA---IAEHYRRRFRHVLVDEYQ 270

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q++++R L  +             L  VGD  QSIY+F GA  + +    +    
Sbjct: 271 DTNTAQYQLVRELVGEET-----DPIHGELTVVGDADQSIYAFRGATIRNIEDFDQDFPN 325

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    + + L  ++RST +ILT  + + +  +  +                     
Sbjct: 326 --------ATSVVLEQNYRSTQNILTAANSLIANNQGRRPKK------------------ 359

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW        +   P+   + +         +    +  +   I             
Sbjct: 360 ---LW------TAAGDGPKLVGYVA--------DAEVDESAFVVEEIDA---------VR 393

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            K   +  DI V  R    +  I  +         I           +   IKD +A   
Sbjct: 394 TKHGYKYGDIAVFYRANAQSRAIEEMF----VRSGIPYKVVGGTKFYERKEIKDALAYLH 449

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-------- 477
            + + +D +S   +L  P           +         +  + +   A+          
Sbjct: 450 AVANPDDTVSIRRILNEPKRGLGAKAEETVAFHAEKYGISFGQSLLDVAHPETAVAEGRS 509

Query: 478 ---------ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE--- 524
                     +        +      A+   +P D    ++ A             +   
Sbjct: 510 AVDGLQKRAANAMIAFATILETARKEAEEGAAPADILDSLMDASGYLDVLQESKDPQDEV 569

Query: 525 VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAK 581
            ++ L EF          +    L E + ++     + +    A     EV +MT+HTAK
Sbjct: 570 RVENLAEFHAVASDFRVRNPEGTLAEFLDQISLVADSDQIPDEAEGYEGEVVLMTIHTAK 629

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE PVVF        F H                                         
Sbjct: 630 GLEFPVVFATGFEDGTFPHIRSLGSPT--------------------------------- 656

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
               E  RL YV +TRA ++L I + +  S      +      + +        ++ + +
Sbjct: 657 -ELAEERRLAYVALTRARERLYITRSATRSQWGAPQELPRSRFLDEIPDGVIEWRREESS 715

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI-LNPS 760
               +         +   +                    K  F+P K   +EP     P+
Sbjct: 716 MDTVRGSSWGSARDSWGSKRNSWSSAGDDSDFAPAIGSGKASFTPGKILDDEPAASTQPA 775

Query: 761 TIDTKGKTNLESLLSDNQTFNRGL 784
             +    T   S     +    G 
Sbjct: 776 ASNGDVVTGGISAGDTVRHAKFGT 799


>gi|319401754|gb|EFV89962.1| recombination helicase AddA [Staphylococcus epidermidis FRI909]
          Length = 1218

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/600 (18%), Positives = 210/600 (35%), Gaps = 47/600 (7%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            K   L  K+K           + +  ++         + + +   +   K+   +LDF 
Sbjct: 307 DKYKSLVMKVKNDYFSRNADDLKRDMQQLAPRVAYLAQIVQDVIHSFGVQKRSRNILDFS 366

Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           D       +L   D   + I     +    IL+DE QDT+ +Q +++  +       K  
Sbjct: 367 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 LF VGD KQSIY F  A+P   + +        T++G     I+L  +FRS  +
Sbjct: 420 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGTDSGL---RIDLSQNFRSRQE 476

Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           +L+  + +F     E    +S D    +   +        VQL   V    ++       
Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDKVSHPVQLRALVEESSEN------- 529

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385
                       + +   A  I   + ++I    ++    G+ R    KDI++L R    
Sbjct: 530 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                   +    +  I    N +    +   ++ +++  R I +   D+  V +++S +
Sbjct: 581 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
           + F+E+++ KI       +  Y+ I+ +            K    I+ I +  + +Q   
Sbjct: 637 YQFTEEELAKIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696

Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
            +             Q F    G +     L    N  +  E +S+  L + I  +++  
Sbjct: 697 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756

Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              K     N      N VR+MT+H++KGLE P V       +         + +     
Sbjct: 757 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                          +          +K    E  RL+YV +TRA +QLI+         
Sbjct: 817 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLVYVALTRAKEQLILVGRVKDEKS 876


>gi|288933724|ref|YP_003437783.1| exodeoxyribonuclease V subunit beta [Klebsiella variicola At-22]
 gi|288888453|gb|ADC56771.1| exodeoxyribonuclease V, beta subunit [Klebsiella variicola At-22]
          Length = 1178

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 131/872 (15%), Positives = 282/872 (32%), Gaps = 128/872 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 +      +  + L        +       K++   L F+D++   ++ L+  D  
Sbjct: 309  LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I Q     +IDE QDT   Q+ + R +                L  +GD KQ+I
Sbjct: 368  EALASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------QQPETALLLIGDPKQAI 419

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    ++ +          G   +   L  ++RS+  ++  V+++FS+ +N   
Sbjct: 420  YAFRGADIFTYMKAR----------GDVAAHYTLDTNWRSSPGMVGSVNRLFSLSDNPFM 469

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
              E     ++  +   G   TV          D+   P    W    D++      + +A
Sbjct: 470  FREIPFLPVKAAAKNQGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519

Query: 347  RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            +  A  I + +         ++     R +QA DI VLVR R +   +    + L     
Sbjct: 520  QLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  + + L  ++L+ L + +L+ E + +    L + +F  +  DI  +     
Sbjct: 578  -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
              + + E   ++        + V+  +  L+              +L  + G ++     
Sbjct: 637  AWDALVEEFSEYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688

Query: 522  GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                   + E L      L +E      L + I+E +    + +    ++ + V+I+T+H
Sbjct: 689  ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V+L          +         +   D G                  ++ 
Sbjct: 743  KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAAVLDLGQD-------------EASLEL 789

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +     E  RLLYV +TRA     +   +  S+ K  N       +       E +   
Sbjct: 790  AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848

Query: 699  KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
             L   +              E     W        PL   E  +++ D+ ++        
Sbjct: 849  GLAARLADFCHGDIALQRPGELDLTPWQAPAATIPPLSARELQRRIADDWRVTSYSGLQQ 908

Query: 748  K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
                   D+     ++ + +    +    +     +    G  +H L + +         
Sbjct: 909  HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHQFPRGAAPGTFLHSLFEELDFTQPVPDG 968

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854
                         + A+    L   +  +L+  +      +    + D   E++      
Sbjct: 969  WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGADIALNQLAARDKQVEMAFYLPIA 1025

Query: 855  ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
                                    ++  +   ++ G ID +   +   ++ +YK++    
Sbjct: 1026 QLLTAERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085

Query: 891  QEIEHI---------PYTHIAQLSIYEKILKD 913
                +           + +  Q  +Y   L  
Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117


>gi|170079561|ref|YP_001736194.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002]
 gi|169887230|gb|ACB00939.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002]
          Length = 1075

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 151/938 (16%), Positives = 295/938 (31%), Gaps = 114/938 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
            +  + W      ++         +E    T+ +    L++           S L +    
Sbjct: 190  LASETWQETQALITQYQGAPGDKLELVRQTLAELMSDLERNQDDITSVPFQSTLQALKSL 249

Query: 76   QKFT--PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA--- 130
            +  +   +KN ++++I K         +    +F  I     T                 
Sbjct: 250  KVGSVGSKKNWLSEDILKTVRSQAIACRDFVQKFPDISLLGLTLGELDERETQWVTTLQG 309

Query: 131  --KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
              +++    +E K++  VLDF DL I     L+       +R    +     LIDE QDT
Sbjct: 310  AFQWVEQRLKEIKQQARVLDFNDLEIYALKALEDP----AVRDYYKERWRAYLIDEFQDT 365

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            +  Q +++ +LT               L  VGD+KQSIY F  A+ +     +       
Sbjct: 366  NPTQGKLLEALT-------GRSEEQSKLTIVGDDKQSIYGFRRADVEVFRAWRSQLNNG- 417

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                     + L  SFR+   ++  ++ VF        L E       HR         +
Sbjct: 418  ---------VALTQSFRTHESLVKNINTVF-----RPVLGELHQDLDAHRQEAPHDPLHL 463

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            +++                   +  + +    +  + A++IA  I  M+  + +  +   
Sbjct: 464  EIYRF-----------------APKEKMAIAEARKVEAQQIAQLIYEMLSQEMLVWDKAT 506

Query: 369  RVIQ---AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            R ++    KDI +L R      + +         ++I  + +    L D     D ++L 
Sbjct: 507  RKLRAIAPKDIAILSRTWDPLDIYSQAL----AQWQIPFLQSSGGNLLDTPEALDGLSLL 562

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
            +FI +  DDL+ V +L+SP    S+  ++++  Q+ + +          +    + Q  +
Sbjct: 563  QFIANPNDDLALVAVLRSPFLTLSDRLLYELRPQKKDKKW----WSCLKDSQQPEVQQRV 618

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSY 544
              + +L++     +P     L            +    E        FL      EQ + 
Sbjct: 619  TILKQLLNKRDIFTPSQLLQLADQLTGYSAVITNLPQAERRLADWRGFLELLRHLEQGTG 678

Query: 545  SSLQ--ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              L     +   +++   I R      N V +MT+H AKGLE  VV + D   ++    +
Sbjct: 679  DVLSVVRRLQRFQRHGVKIPRPPLEAENAVSLMTIHAAKGLEWSVVIVPDLTRKL---SN 735

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                 +                   ++ +   L  H K+    E  R+LYV +TRA D+L
Sbjct: 736  TSSSILFDPEFGVALKQRDDQGKLQKSVLFQLLEGHQKERETAEAKRVLYVALTRARDRL 795

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            I+             Q    D        D                           E  
Sbjct: 796  ILTTPKEKGGGLDLLQPGLEDFAIKDISPDLYPPAEPWC------------------EGD 837

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
               + +   QL+ E      L  P+               +   +    +    N     
Sbjct: 838  ESSKPQQPPQLLLEPARSYGLELPMTALTTYARCPKKFYFEQIIRHPGLTEGESNYGAAI 897

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            G + H  L+          +              P  + +  L        +P+     +
Sbjct: 898  GSLTHTALEK-------DYQTVEQLNFHNQDLKLPPDKVQEALDLAQTFRTDPVFAAVQA 950

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
             +          +   +  ++++GR D +       F+ + KT           P  H  
Sbjct: 951  GEK------EIALELRQNQLVLNGRADLV----GTNFVLDVKTDSKPN------PIEHRF 994

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
            QL  Y +  +     K     + Y+ + +++      L
Sbjct: 995  QLWAYARAAE-----KP-TAYIAYLRQRQLYTFSPTDL 1026


>gi|239947646|ref|ZP_04699399.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921922|gb|EER21946.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 653

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/567 (19%), Positives = 187/567 (32%), Gaps = 121/567 (21%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                + L    +AK +   Y++    + VLDF DL++  N+L  K      I     ++
Sbjct: 159 LSASDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNP---KILRYYQEK 215

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +ILIDE QDT+++Q+   R L   +          + +  VGD+ QSIY + GAE   
Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +LR ++             +II+L  ++RST  IL     V +  +N  G +        
Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW     +   +       W+   +           AR IA  I  +
Sbjct: 310 -------------LW---TDRESGEKIKIISCWSDKEE-----------ARYIAGEIDKL 342

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +  D            A +I +LVR    T            +  I           + +
Sbjct: 343 VREDR---------YNAGNIAILVRAGFQTRSFEEAF----INSAIPYKIIGGLRFYERM 389

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475
            I+D++A  R  L+Q D+L+   ++  P        + KI         + +  I++   
Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRVYALERNISNFAAIKEMLE 449

Query: 476 ------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
                       + ++  I          +P +    IL      +        E    I
Sbjct: 450 IGEIKAKSYDSLKDLVTKIDNWYERFSIDAPINVVKAILDDSSYLEMLQEEKTEEALGRI 509

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584
           + ++E L               ++   +E     ++           V IMT+H AKGLE
Sbjct: 510 ENINEMLRAIAEF--------NDIHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVFL      VF  +                                       +   
Sbjct: 562 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGEKGL 589

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671
           EE  R+ YVG+TRA   L I    N  
Sbjct: 590 EEERRIAYVGITRAKKDLYITHAENRK 616


>gi|325982040|ref|YP_004294442.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
 gi|325531559|gb|ADZ26280.1| UvrD/REP helicase [Nitrosomonas sp. AL212]
          Length = 1158

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 157/936 (16%), Positives = 312/936 (33%), Gaps = 140/936 (14%)

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEFIKIRDRFNTYKMF 120
            +  ++   LT++ + +K I    IN+  P       K++ KK ++ +  +    ++ ++F
Sbjct: 278  WCGIAELLLTREGSWRKKI---SINEGFPSGGSKIEKDEAKKWKNRWSDLIAALSSEEVF 334

Query: 121  KSTLASLTLAKYLN-----------------AHYEEAK---KKNCVLDFEDLIINTNDLL 160
            + TL  + L                          + K   + +  +DF ++       L
Sbjct: 335  RQTLHDVRLLPPAYYTDKQWKILGAITRLLPNAVAQLKIIFQTSGFVDFSEVTQRALLAL 394

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
               +    +   +D  I H+LIDE QDTS+ Q+++I  L   + +G       R+LFAVG
Sbjct: 395  GDSEFPTDLALALDYRIQHLLIDEFQDTSISQFKLIEKLIAGWEMGDG-----RSLFAVG 449

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D  QSIY F  AE    L+ +                I L  +FRS   I+  V++ F+ 
Sbjct: 450  DPMQSIYRFREAEVGLFLQARNT-----GIGHLVLQPITLSSNFRSQQGIIDWVNETFTQ 504

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                +   E  +  + +  S        ++  +V    D     +               
Sbjct: 505  IMPVRD--EIESGAVSYTPSTAIHSKLTEIAVKVYPLLDKNQIVE--------------- 547

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                 AR++   I              +R      I +LVR R    +I    +      
Sbjct: 548  -----ARQVIEIIQQ-----------TRRDYPTNTIAILVRNRSHLQVIVQKLKE----S 587

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             +     D  +L     ++DL+ + R +++  D++++  +L++P   F   DI  +   R
Sbjct: 588  GLQFRAVDIELLHYRPVVQDLLIITRALINLADEVAWFALLRAPWCGFLLKDIDALLRSR 647

Query: 461  HE-----------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             E                     + Y+   A   I + +  +                + 
Sbjct: 648  KEEDCDTTISGTVLWKLIGDPNHWCYLSDDAKARIERLRDALAPCIMHRQRQPLRMTVEA 707

Query: 504  FTLILGAKK----GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                LG         ++  +       D +        + E  +   L      L+    
Sbjct: 708  MWQALGGPGCINPVIKKNRNDISATWSDAMIFLDYLEKQEESGTIRDLIGFEKGLDAL-- 765

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG-SQVFSHKHIKKMHIMPSLNDDPGI 618
                      + ++IMT+H AKGLE   V +   G  Q  + K + K    P        
Sbjct: 766  -YASQDVGADDSLQIMTIHKAKGLEFDTVIVPGLGREQRRNDKQLLKWIEQPHDRIKIES 824

Query: 619  PIWIPQ---------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             +  P+             + I   + K   K  Q E +RLLYV +TR    L +  H N
Sbjct: 825  KLVNPELLLAPIQETGLDSDPIYRWMEKIDCKKEQNEADRLLYVAVTRTRKFLHLLGHVN 884

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW-IAYEWSTHHPENTPLEREE 728
                ++         V    H    V ++   ++  K+     ++      E    + + 
Sbjct: 885  LVESEEGKYIPKKPAVGSLLHRLWPVMQLIYFDAAEKNTMGKNFKREDKDWEGFVNDIDN 944

Query: 729  T-IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
              I +L +   +P    S   N+I E   +           ++E   +     + G ++H
Sbjct: 945  QGIYRLKEGWVLPDAPKSVAWNEIYETKQVQQ---------DIEFSWASEMARHVGNVVH 995

Query: 788  KLLQVIFTLPEHKRKNFITSY--------CTKNAKLWPAKEYKNLLLSI----TRLLENP 835
            + L+ I     H                    +      KE +N +  I       + + 
Sbjct: 996  RWLKKIADDELHTWDAARIRMMHGCFKQNLLADGMNGNDKEVENAIDRIILALINTISDE 1055

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIE 894
                 +    +++     ++     + +++  ID+         ++ +YKT +H   +IE
Sbjct: 1056 RGRWILGRHRHAK--NELRVVGIVGNKLMNCVIDRTFNDSMGTRWVIDYKTGNHEGADIE 1113

Query: 895  ----HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                     +  QL+ Y K+++       +   + +
Sbjct: 1114 NFMNREQIRYYEQLNYYAKLMRQLDSQ-PIKLGIYF 1148


>gi|254773951|ref|ZP_05215467.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 710

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 111/746 (14%), Positives = 207/746 (27%), Gaps = 141/746 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + +    +     +        +            + L         ++   
Sbjct: 13  AAAEMRERVVR---LVGNRARAMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRR 69

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + D          +    
Sbjct: 70  LLQMIGRDMGLDI-KRYSPRLLANAISNLKNELIDPAAAVANLTDD---------SDELS 119

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 120 RTVASVYGEYQRRLRAANALDFDDLIGETVAVLR---AFPQIAQHYRRRFRHVLVDEYQD 176

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L             P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 177 TNHAQYVLVRELVG---TDTEDGVPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 231

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I L  ++RST +IL+  + V +     +                      
Sbjct: 232 ------DATTILLEQNYRSTQNILSAANSVIARNSGRRDKR------------------- 266

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 267 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAQKGE------ 304

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +     +         I           +   I+D++A  R 
Sbjct: 305 ---ITYNDVAVFYRTNNSSRSFEEVF----IRAGIPYKVVGGVRFYERKEIRDIIAYLRV 357

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIK 486
           + +  D +S   +L +P     +     +     +   +  + +   A   +       +
Sbjct: 358 LDNPGDAVSMRRILNTPRRGIGDRAEACVAVYAENTGASFADALVAAAEGKVPMLNSRAE 417

Query: 487 Y-------IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                   + + +         D    +L     R++  S    +    +D L+E ++  
Sbjct: 418 KAIAGFVELLDDLRGRLDDDLGDLVESVLERTGYRRELESSTDPQELARLDNLNELVSVA 477

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRA--------------------HSANHNEVRIMT 576
                   ++   L   L+                                    V +MT
Sbjct: 478 HEF-STDRANAAALDESLDAADDEDVPDTGVLAEFLERVSLVSDSDEIPEDGAGMVTLMT 536

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +HTAKGLE PVVF+      +F H       +                            
Sbjct: 537 LHTAKGLEFPVVFVTGWEDGMFPHMRSLDDPV---------------------------- 568

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                    E  RL YVG+TRA  +L + +    S+  +         + +        +
Sbjct: 569 ------ELSEERRLAYVGITRARQRLYLSRAIVRSSWGQPMLNPESRFLREIPQELIEWR 622

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENT 722
           +     S +     A  + T     T
Sbjct: 623 RTAPAPSFSAPVSGAGRFGTPRAAPT 648


>gi|313884923|ref|ZP_07818675.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619614|gb|EFR31051.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 787

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 125/719 (17%), Positives = 233/719 (32%), Gaps = 156/719 (21%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
             G    ++  L ++  + +   QV+  N             + ++ Q L   +      
Sbjct: 29  AAGAGSGKTRVLTHRIAYLVQAKQVNPWNILAITFTNKAANEMKERVQALVGPAAESIWV 88

Query: 64  ERFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS---------QDEFIKIR 111
             F  + +  L ++        N    +  +++  +K  LK+          +D    I 
Sbjct: 89  STFHAMCARILRREAAKVGYSSNFTIIDQGEQATLMKNILKELNLDGKQFNYKDFLYVID 148

Query: 112 DRFNTYKMFKSTLASLT-----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
           D  N  ++ +   AS       +   + A Y+   K N  +DF DLI+ T  LL++ + +
Sbjct: 149 DAKNKGQLPEDFAASHAGFIEDIQANVYAKYQAYLKANNSMDFNDLILLTVKLLEENEET 208

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              R     +  +I +DE QDT+  Q+ +++ LT             R +  VGD  QSI
Sbjct: 209 ---RLFYQHKFQYIHVDEYQDTNQSQYLLVQLLTGIL----------RNVCVVGDADQSI 255

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA  + +L  +              + I L  ++RST  IL   + V    ++ Q 
Sbjct: 256 YGWRGANMENILNFEEDFP--------DATTILLEQNYRSTQTILNAANSVIENNKSRQA 307

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW         +   ++ S+    +   +       A
Sbjct: 308 KK---------------------LW-------SDKAKGEKVSFYIADNDRSE-------A 332

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +  TI  +  +    +          DI VL R +  +  +            ++   
Sbjct: 333 MYVTATIERLKQSQQAKNQ---------DIAVLYRTQAQSRSLEDQF----LKANLAYRI 379

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465
                      I+D +A  R I +  D+LSF  ++  P     +  + K+         +
Sbjct: 380 VGGLKFYSRKEIQDTLAYLRLIDNPSDNLSFRRIVNVPKRGIGQTSVDKLQDLANQMGVS 439

Query: 466 VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +YE +++       +   +KF      I +L   A+F    D    +             
Sbjct: 440 LYEAMEQMVLSNIPSRTQAKFFAFKTMIDQLRQQAEFLPISDLVDQVWQQSGYLADLQKN 499

Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSS--------------------------LQELI 551
              E    I+ L+EF + T   ++   S                           L   +
Sbjct: 500 KDIESMTRIENLEEFASVTKSFDEEDQSMRLEADPDMVDPDQDDQSETDLSQRQLLTLFL 559

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           +++           + + ++V +MT+H AKGLE P VF+V     +F  +   +      
Sbjct: 560 TDISLVTDRENNE-NQDPDQVTLMTLHAAKGLEFPYVFMVGMEEGLFPLRRASENEEELE 618

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                                   YVGMTRA DQL +   +N 
Sbjct: 619 EERRL----------------------------------AYVGMTRAQDQLFLSASANR 643


>gi|290511196|ref|ZP_06550565.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. 1_1_55]
 gi|289776189|gb|EFD84188.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. 1_1_55]
          Length = 1178

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 131/872 (15%), Positives = 282/872 (32%), Gaps = 128/872 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 +      +  + L        +       K++   L F+D++   ++ L+  D  
Sbjct: 309  LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I Q     +IDE QDT   Q+ + R +                L  +GD KQ+I
Sbjct: 368  ETLASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------RQPETALLLIGDPKQAI 419

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    ++ +          G   +   L  ++RS+  +++ V+++FS+ +N   
Sbjct: 420  YAFRGADIFTYMKAR----------GDVTAHYTLDTNWRSSPGMVSSVNRLFSLSDNPFM 469

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
              E     ++  +   G   TV          D+   P    W    D++      + +A
Sbjct: 470  FREIPFLPVKAAAKNQGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519

Query: 347  RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            +  A  I + +         ++     R +QA DI VLVR R +   +    + L     
Sbjct: 520  QLCATQIRDWLSAGQQGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  + + L  ++L+ L + +L+ E + +    L + +F  +  DI  +     
Sbjct: 578  -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
              + + E    +        + V+  +  L+              +L  + G ++     
Sbjct: 637  AWDALVEEFSDYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688

Query: 522  GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                   + E L      L +E      L + I+E +    + +    ++ + V+I+T+H
Sbjct: 689  ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V+L          +         +   D G                  ++ 
Sbjct: 743  KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAAVLDLGQD-------------EASLEL 789

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +     E  RLLYV +TRA     +   +  S+ K  N       +       E +   
Sbjct: 790  AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848

Query: 699  KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
             L   +              E     W        PL   E  +++ D+ ++        
Sbjct: 849  GLAARLADFCHGDIALQRPGELDLTPWQAPAATIPPLSARELQRRIADDWRVTSYSGLQQ 908

Query: 748  K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
                   D+     ++ + +    +    +     +    G  +H L + +         
Sbjct: 909  HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHQFPRGAAPGTFLHSLFEELDFTQPVPDG 968

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854
                         + A+    L   +  +L+  +      +    + D   E++      
Sbjct: 969  WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGADIALNQLAARDKQVEMAFYLPIA 1025

Query: 855  ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
                                    ++  +   ++ G ID +   +   ++ +YK++    
Sbjct: 1026 QLLTAERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085

Query: 891  QEIEHI---------PYTHIAQLSIYEKILKD 913
                +           + +  Q  +Y   L  
Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117


>gi|301328420|ref|ZP_07221506.1| DNA helicase II [Escherichia coli MS 78-1]
 gi|300845170|gb|EFK72930.1| DNA helicase II [Escherichia coli MS 78-1]
          Length = 700

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 151 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 207

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 208 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 252

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 253 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 288

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 289 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 327

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 328 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 380

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 381 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 440

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 441 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 500

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 501 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 560

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 561 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 586

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 587 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 629


>gi|237801766|ref|ZP_04590227.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|237806704|ref|ZP_04593408.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331024625|gb|EGI04681.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331027818|gb|EGI07873.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 727

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 119/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIINNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L         H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIA 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|86148257|ref|ZP_01066553.1| DNA helicase II [Vibrio sp. MED222]
 gi|218710970|ref|YP_002418591.1| DNA-dependent helicase II [Vibrio splendidus LGP32]
 gi|85833953|gb|EAQ52115.1| DNA helicase II [Vibrio sp. MED222]
 gi|218323989|emb|CAV20351.1| DNA helicase II [Vibrio splendidus LGP32]
          Length = 724

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/548 (17%), Positives = 185/548 (33%), Gaps = 116/548 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           + + Y+EA  +  ++DF ++++ +++LL+       IR        HIL+DE QDT+ IQ
Sbjct: 174 IYSAYQEACDRAGLVDFAEILLRSHELLRD---KKHIREHYQARFKHILVDEFQDTNNIQ 230

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R +                +  VGD+ QSIY + GA+ + + +             
Sbjct: 231 YAWLRMMAG----------PDCRVMIVGDDDQSIYGWRGAKIENIQKFLDEFP------- 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              S + L  ++RST  IL   +++ S      G                      +LW 
Sbjct: 274 -GASTVRLEQNYRSTKTILQASNELISNNTERMGK---------------------ELW- 310

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +  S  S ++ L +       AR     I                   
Sbjct: 311 ------TDGNDGEPISVYSAYNELDE-------ARFTVSKIKEWQEKGGALE-------- 349

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            +           +   I+D ++  R + ++ 
Sbjct: 350 --DTAMLYRNNAQSRVLEEAL----IQGGLPYRIYGGMRFFERQEIRDALSYLRLMSNRS 403

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485
           +D +F  ++ +P     +  +  I    R    T++E                      I
Sbjct: 404 NDAAFERVVNTPTRGLGDKTLETIRLAARDRGATMWEASVALIEEQVLPGRAAGALSRFI 463

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L         H+    ++ +      +    G +    I+ L+E +  T + E+ 
Sbjct: 464 ELINALEDDTIELRLHEQTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKP 523

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F  
Sbjct: 524 EEADEMSMLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPS 583

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                      +    EE  RL YVGMTRA +
Sbjct: 584 QMS----------------------------------AEEAGRLEEERRLCYVGMTRAME 609

Query: 661 QLIICKHS 668
           +L I    
Sbjct: 610 KLYITYAE 617


>gi|330009177|ref|ZP_08306461.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. MS 92-3]
 gi|328534896|gb|EGF61433.1| exodeoxyribonuclease V, beta subunit [Klebsiella sp. MS 92-3]
          Length = 1178

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 131/872 (15%), Positives = 281/872 (32%), Gaps = 128/872 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 +      +  + L        +       K++   L F+D++   ++ L+  D  
Sbjct: 309  LFSAVESLLASSLTLTDLVLARAMVEIRDAVAREKRRRGELGFDDMLSRLDEALRG-DSG 367

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I Q     +IDE QDT   Q+ + R +                L  +GD KQ+I
Sbjct: 368  ETLASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWR--------RQPETALLLIGDPKQAI 419

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    ++ +          G   +   L  ++RS+  ++  V+++FS+ +N   
Sbjct: 420  YAFRGADIFTYMKAR----------GDVAAHYTLDTNWRSSPGMVGSVNRLFSLSDNPFM 469

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
              E     ++  +   G   TV          D+   P    W    D++      + +A
Sbjct: 470  FHEIPFLPVKAAAKNKGLRFTV----------DAADVPAMNVWLMPGDTVGSGDYQTFMA 519

Query: 347  RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            +  A  I + +         ++     R +QA DI VLVR R +   +    + L     
Sbjct: 520  QLCATQIRDWLSAGQRGRALLWRGETSRPVQASDITVLVRNRLEAAQVREALQTLGIP-- 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  + + L  ++L+ L + +L+ E + +    L + +F  +  DI  +     
Sbjct: 578  -SVYLSNRDSVFETLEAQELLWLLQAVLAPERENTLRSALATSMFGLTALDIENLNQDEQ 636

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
              + + E   ++        + V+  +  L+              +L  + G ++     
Sbjct: 637  AWDALVEEFSEYRQIWRQ--RGVMPMLRALMTARH------IAENLLATRGGERRLTDIL 688

Query: 522  GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                   + E L      L +E      L + I+E +    + +    ++ + V+I+T+H
Sbjct: 689  ------HISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQQMRLESDKHLVQIVTIH 742

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V+L          +         +   D G                  ++ 
Sbjct: 743  KSKGLEYPLVWLPFIARFRKQDQAFYHDRETFAAVLDLGQD-------------EASLEL 789

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +     E  RLLYV +TRA     +   +  S+ K  N       +       E +   
Sbjct: 790  AEAERLAEDLRLLYVALTRAVWHCSL-GVAPLSSRKSGNSDFHLSALGRLLQAGEAMDAA 848

Query: 699  KLTNSINK-----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
             L   +              E     W         L   E  +++ D+ ++        
Sbjct: 849  GLAARLADFCHGDIALQRPGELDLTPWQAPAATIPRLSARELQRRIADDWRVTSYSGLQQ 908

Query: 748  K-----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
                   D+     ++ + +    +    +     +    G  +H L + +         
Sbjct: 909  HGFSGGQDLLPRLDVDAAGVGEVVEEPQLTPHHFPRGAAPGTFLHSLFEELDFTQPVPEG 968

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK-- 854
                         + A+    L   +  +L+  +      +    S D   E++      
Sbjct: 969  WMAEKL---QLSGFDAQWAPVLTDWLGGVLKTRLPGPDIALNQLASRDKQVEMAFYLPIA 1025

Query: 855  ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
                                    ++  +   ++ G ID +   +   ++ +YK++    
Sbjct: 1026 QLLTAERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE 1085

Query: 891  QEIEHI---------PYTHIAQLSIYEKILKD 913
                +           + +  Q  +Y   L  
Sbjct: 1086 DREAYTRPAMEQAMRAHRYDLQYQLYSLALHR 1117


>gi|193216394|ref|YP_001997593.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
 gi|193089871|gb|ACF15146.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
          Length = 765

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 118/636 (18%), Positives = 204/636 (32%), Gaps = 118/636 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y E  +KN  LDF+DL+I    L  +      I     +   +I+IDE QDT+
Sbjct: 184 TAEVFYKYNERLQKNNALDFDDLLIKPIKLFNEHPE---ILAHYQERFQYIMIDEYQDTN 240

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ V + L              R +  VGD+ QSIYS+ GA+   +L  +        
Sbjct: 241 RAQYIVAKMLAGQ----------HRNICVVGDDAQSIYSWRGADIANILGFQNDY----- 285

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
              ++ +I  L  ++R T  IL V + V S  +     +                     
Sbjct: 286 ---KEATICRLEENYRCTKTILKVANTVISNNKEQLEKTLY------------------- 323

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                     S    +  +     D   +       A ++A  I                
Sbjct: 324 ---------TSNETGEPVTLFEATDERRE-------AEKVAMAIRE---------RKLSS 358

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q  D  +  R    +  +    RF      I+              IKD++A  RFIL
Sbjct: 359 GNQNSDFAIFYRTNAQSRALEDALRF----NGIAYRVFGGVSFYKRKEIKDIVAYLRFIL 414

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGIS-----KFQH 483
           +  D+ S + ++  P     E  + ++      E  ++YE I +  +  +          
Sbjct: 415 NSRDEESLLRIINFPARGVGETSLKRLKDIAIEEGFSLYEAICRATHYDLQNRLISALND 474

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
               I +L  IAQ  + ++    +L   +  +   +    E     D L EFLNF  +  
Sbjct: 475 FRMLIEDLREIAQQHTAYEVVAELLRKTRLLEILKNENTAEANARYDNLQEFLNFARQFC 534

Query: 541 QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             S      L + L+       +    AN N+V +MT+H AKGLE PVVF+     ++F 
Sbjct: 535 DKSAED-PSLNAFLQSASLATDQDNADANGNQVTLMTIHAAKGLEFPVVFVTGLEERLFP 593

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
               +   +                                           YV +TRA 
Sbjct: 594 LNPDEPRELEEERRL------------------------------------FYVALTRAE 617

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L +    +     +S        + +        +  KL + I   +  A +   H+ 
Sbjct: 618 KKLYVSFAKSRYKFGQSFPAKRSRFIEELDGGSVVTEGGKLLDEIRLQD--AEKSRYHYD 675

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
           ++    R     +    +  P           +   
Sbjct: 676 DSEYTSRSNFSDRAQSRRVAPAASRQTSLTSSSAKK 711


>gi|295095174|emb|CBK84264.1| ATP-dependent DNA helicase UvrD [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 724

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/579 (17%), Positives = 183/579 (31%), Gaps = 116/579 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ IQ
Sbjct: 177 VYKAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNNIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L  D             +  VGD+ QSIY + GA+ + + R             
Sbjct: 234 YAWIRLLVGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP------- 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST++IL+  + +        G                       LW 
Sbjct: 277 -GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +  S    F+ L +       AR +   I                   
Sbjct: 314 ------TDGVDGEPISIYCAFNELDE-------ARFVVNRIKTWQENGGALEQ------- 353

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                +L R    + ++            +           +   IKD ++  R I ++ 
Sbjct: 354 ---CAILYRSNAQSRVLEEAL----LQVSMPYRIYGGMRFFERQEIKDALSYLRLIANRN 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q  +
Sbjct: 407 DDAAFERVVNTPTRGIGDRTLDVVRQASRDRQLTLWQACRELLQEKALAGRAASALQRFL 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE-Q 541
           + I  L         H     ++     R  +    G      I+ L+E +  T +    
Sbjct: 467 ELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYN 526

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                L  L + L        +       + V++MT+H+AKGLE P VF+V     +F  
Sbjct: 527 EEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                           EE  RL YVG+TRA  
Sbjct: 587 QMSLDEGG----------------------------------RLEEERRLAYVGVTRAMQ 612

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +L +          K         + +         +++
Sbjct: 613 KLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLR 651


>gi|157964534|ref|YP_001499358.1| DNA helicase II [Rickettsia massiliae MTU5]
 gi|157844310|gb|ABV84811.1| DNA helicase II [Rickettsia massiliae MTU5]
          Length = 653

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/567 (19%), Positives = 190/567 (33%), Gaps = 121/567 (21%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +  + L    +AK +   Y++    + VLDF DL++  N+L  K      I     ++
Sbjct: 159 LSVSDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNPE---ILRYYQEK 215

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +ILIDE QDT+++Q+   R L   +          + +  VGD+ QSIY + GAE   
Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +LR ++             +II+L  ++RST  IL     V +  +N  G +        
Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW     +   +       W+   +           AR IA  I  +
Sbjct: 310 -------------LW---TDRESGEKIKIISCWSDKEE-----------ARYIAGEIDKL 342

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +  D            A +I +LVR    T            +  +           + +
Sbjct: 343 VREDR---------YNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475
            I+D++A  R  L+Q D+L+   ++  P        + KI         + +  I++   
Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGATSLNKIRVYALERNISNFAAIKEMLE 449

Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
            G  K       + ++  I          +P +    IL      +        E    I
Sbjct: 450 IGEIKAKSYETLKELVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584
           + ++E L               ++   +E     ++           V IMT+H AKGLE
Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVFL      +F  +                                       +   
Sbjct: 562 FDVVFLPGWEEGIFPSQRSLD--------------------------------EDGEKGL 589

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671
           EE  R+ YVG+TRA   L I    +  
Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616


>gi|320191094|gb|EFW65744.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str.
           EC1212]
          Length = 720

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 185/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  I  L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWISLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|315022895|gb|EFT35919.1| ATP-dependent DNA helicase UvrD/PcrA [Riemerella anatipestifer
           RA-YM]
 gi|325336848|gb|ADZ13122.1| Superfamily I DNA and RNA helicase [Riemerella anatipestifer RA-GD]
          Length = 779

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/656 (15%), Positives = 196/656 (29%), Gaps = 131/656 (19%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             A++ L   +   Y E   KN  +DF+DL++ TN+LL +      +  K      +IL+
Sbjct: 168 ARANMKLIGQIYQKYVEVCFKNGAMDFDDLLLRTNELLTRFPE---VLAKYQDRFRYILV 224

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q+ ++++L   F            +  VGD+ QSIYSF GA    +L  K+
Sbjct: 225 DEYQDTNHSQYLIVKALASKFE----------NICVVGDDAQSIYSFRGANIYNILNFKK 274

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                          + L  ++RST +I+   + V +  +     +  S           
Sbjct: 275 DYP--------GAVTVSLEQNYRSTQNIVNAANVVIAKNQQQFKKNVFSA---------- 316

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                            ++   + + + S  D+          A  +A  I  +  +   
Sbjct: 317 -----------------NEEGEKLKVYRSLSDADE--------ANFVAANIWELHNSQQR 351

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                       +  +L R    T       R       I               +KDL+
Sbjct: 352 M---------FNEFAILYRTNSQTRAFEDALR----RKNIPYRVYGGLSFYQRKEVKDLL 398

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI--- 478
           A  R ++++ D  +   ++  P+    E    K+      +  ++ + +           
Sbjct: 399 AYLRLLVNENDAEALTRIINYPVRGIGETTQNKLIVYADGQGLSLAQVLSDLPFHTPRLG 458

Query: 479 ------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
                 +K     + I     + +  + +     +       +        E    ++ +
Sbjct: 459 LNNSALNKLNDFWQMIKAFQVMLKTENAYTVAMEVAKRSGLIKNLKDDQTPEGISRLENI 518

Query: 530 DEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            E +N            +   +SL   +  +     T  +    + + V +MT+H +KGL
Sbjct: 519 QELMNSMQGFIEEQQQLEEGDASLSNFLENIALSADTQDK-PDGSEDMVSLMTIHLSKGL 577

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVV LV     +F                                             
Sbjct: 578 EFPVVHLVGLEENLFPSFMSSSSREELEEERRL--------------------------- 610

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
                   YV +TRA  Q  +    +     K         + +            L  S
Sbjct: 611 -------FYVALTRAEKQAYLSYAVSRFQWGKITDSEPSRFLSEIDAQYLD----FLNAS 659

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
           + +         ++  ++TP            ++       +       EP  L P
Sbjct: 660 MERHFVNHSGIKSNIFDDTPSAPIAF----KKKEPKKTLNRAETSLQPKEPKKLKP 711


>gi|190892554|ref|YP_001979096.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652]
 gi|190697833|gb|ACE91918.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652]
          Length = 832

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/669 (16%), Positives = 205/669 (30%), Gaps = 113/669 (16%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+         DF DL+++   + +K      +  +      +IL+DE QDT+ 
Sbjct: 229 RDLYFAYQARLSTLNACDFGDLLMHPIAIFRKNPD---LLKEYHGRFRYILVDEYQDTNT 285

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +       +   P+ +  VGD+ QSIY + GAE   +LR ++        
Sbjct: 286 AQYMWLRLLAQR------SKGEPQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 334

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL     + +  E   G +  +                   
Sbjct: 335 ---GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDR----------------- 374

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                    +  +  +    + +DS  +       AR I   I  +     +        
Sbjct: 375 ---------ADPDDVKVQVHASWDSEEE-------ARAIGEEIEQLQRNKHLL------- 411

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D+ +LVR              L     ++          + L I+D MA  R +  
Sbjct: 412 ---NDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVAQ 464

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++ +P     +  +  +    R     +           +           
Sbjct: 465 PADDLAFERIINTPKRGLGDTTVRALHDYARARDIPMLAAAADMIETDELKPKARKALFD 524

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           VI+       + +     +    IL        + +    E    L+         E   
Sbjct: 525 VIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSME--- 581

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S + +   LE     +    + N + V IMT+H+AKGLE   VFL      +F H+  
Sbjct: 582 --SFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFETVFLPGWEEGLFPHQRS 639

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                ++  EE  RL YVG+TRA  +  
Sbjct: 640 LD--------------------------------ESGRAGLEEERRLAYVGITRAKRRCH 667

Query: 664 ICKHSNTSNEK---KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           I   SN         +    + D + ++      +++              ++ +     
Sbjct: 668 IWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFAN 727

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLSDNQT 779
           +      +  +    +                  Y  + P      G+   +S  S+   
Sbjct: 728 SYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRTIDGELVAKSTSSEPSR 787

Query: 780 FNRG-LIIH 787
           F  G  + H
Sbjct: 788 FTLGDRVFH 796


>gi|282875534|ref|ZP_06284405.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135]
 gi|281295561|gb|EFA88084.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135]
          Length = 1218

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/600 (18%), Positives = 209/600 (34%), Gaps = 47/600 (7%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            K   L  K+K           + +  ++         + + +   +   K+   +LDF 
Sbjct: 307 DKYKSLVMKVKNDYFSRNAEDLQRDMQQLAPRVAYLAQIVQDVIQSFGVQKRSRNILDFS 366

Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           D       +L   D   + I     +    IL+DE QDT+ +Q +++  +       K  
Sbjct: 367 DYEHFALRILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 LF VGD KQSIY F  A+P   + +          +G     I+L  +FRS  +
Sbjct: 420 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGNESGL---RIDLSQNFRSRQE 476

Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           +L+  + +F     E    +S D    +   +        VQL   V +  ++       
Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDEVSHPVQLRALVEASSEN------- 529

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385
                       + +   A  I   + ++I    ++    G+ R    KDI++L R    
Sbjct: 530 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                   +    +  I    N +    +   ++ +++  R I +   D+  V +++S +
Sbjct: 581 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
           + F+E+++ +I       +  Y+ I+ +            K    I+ I +  + +Q   
Sbjct: 637 YQFTEEELAEIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696

Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
            +             Q F    G +     L    N  +  E +S+  L + I  +++  
Sbjct: 697 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756

Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              K     N      N VR+MT+H++KGLE P V       +         + +     
Sbjct: 757 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                          +          +K    E  RL+YV +TRA +QLI+         
Sbjct: 817 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLIYVALTRAKEQLILVGRVKDEKS 876



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 77/225 (34%), Gaps = 20/225 (8%)

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                   ++ ++L +   N   +        + +  +    +     +    G ++H ++
Sbjct: 996  PSKQSVSELKRQLETEESNTNYDRVRQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVM 1055

Query: 791  QVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA-MSCDSY 846
            Q +    +   K+ +  Y  +  + +L      +++ +  I   ++ P+      + + Y
Sbjct: 1056 QHLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVY 1115

Query: 847  SEVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVPQEIE- 894
            +E+           +    +D+ II G ID I  S    +  +YKT          + E 
Sbjct: 1116 TELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEI 1175

Query: 895  --HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
               +   +  Q++ Y   L+     + +   L +     +  I  
Sbjct: 1176 GNQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 1218


>gi|264677052|ref|YP_003276958.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
 gi|262207564|gb|ACY31662.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
          Length = 827

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 106/597 (17%), Positives = 191/597 (31%), Gaps = 153/597 (25%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YEE  ++  V+DF +L++ + +LL+     A +R+   +   HIL+DE QDT+ +
Sbjct: 191 ELYQLYEEQCQREGVVDFGELMLRSYELLRDD---AHLRHHYQRRFQHILVDEFQDTNKL 247

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q++ ++ L  D       + S  ++ AVGD+ QSIY+F GA    +    R    +    
Sbjct: 248 QYQWLKQLAGDDV--GGRYESAASVIAVGDDDQSIYAFRGARVGNMADFIREFDVK---- 301

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I+L  ++RS ++IL   + + S   N  G +                       
Sbjct: 302 ----NQIKLEQNYRSFSNILDCANALISHNSNRLGKNL---------------------- 335

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +           + +  D           A  +   I  ++  D           
Sbjct: 336 -----RTSQGPGEPVRIYEAPSDLAE--------AAWMVDEIKQLVRND---------GF 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             ++I VL R    + +I         + KI           +   IK  +A  R + + 
Sbjct: 374 TRQEIAVLYRSNAQSRVIESAL----FNSKIPYRVYGGLRFFERAEIKHALAYLRLLENP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD SF+ ++  P        I  +  T R    ++ + +        +K Q  +  I  
Sbjct: 430 HDDTSFLRVVNFPARGIGARTIEVLQDTARSSGTSLSDAVTAVGGAAGTKLQGFVAQIDV 489

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539
           L    Q  +  +    +       + + +   G + I+ L E +                
Sbjct: 490 LREQTQGRTLREIIETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFVTQEGFGRDA 549

Query: 540 ------EQNSYSSLQE---------------------------------------LISEL 554
                 EQ +   L +                                       L + L
Sbjct: 550 VAMPLDEQQNAPQLSQSPVSQGLDPNQPLLDEALRAPAGTAASMVNADTGETLSPLQAFL 609

Query: 555 EQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                        A  + V++MTVH +KGLE   VF+      +F H++           
Sbjct: 610 VHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDAVFIGGVEEGLFPHEN----------- 658

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                    + +   EE  RL YV +TRA  +L +      
Sbjct: 659 -----------------------AMMDRGGLEEERRLAYVAITRARKRLYLSHSQTR 692


>gi|170724287|ref|YP_001751975.1| DNA-dependent helicase II [Pseudomonas putida W619]
 gi|169762290|gb|ACA75606.1| UvrD/REP helicase [Pseudomonas putida W619]
          Length = 729

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 120/721 (16%), Positives = 228/721 (31%), Gaps = 131/721 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   Q S  +             + ++ + L   +        
Sbjct: 33  GAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGMWVGT 92

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--K 109
           F              + L   F       Q+ ++ + I +   D +    +    FI  +
Sbjct: 93  FHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLVKRVIRELGLDEQRWPARQAQWFINGQ 152

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +      +  S    L   + +   YE+A ++  V+DF +L++   DL +       +
Sbjct: 153 KDEGLRPQHIQASGDLFLGTMRSIYEAYEQACERAGVIDFSELLLRALDLWRDHPG---L 209

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   H+L+DE QDT+ +Q+  +R L               +L AVGD+ QSIY +
Sbjct: 210 LEHYQRRFRHLLVDEFQDTNAVQYAWLRLLAGK---------GGGSLMAVGDDDQSIYGW 260

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                 +I L  ++RST  IL   + + +      G   
Sbjct: 261 RGAKIENIHQYTADFP--------DAEMIRLEQNYRSTGGILKAANALIANNSGRLGK-- 310

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW             +  +  + ++   +       AR +
Sbjct: 311 -------------------ELW-------TDLGEGEPLTLYAAYNEHDE-------ARYV 337

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
             TI ++I                 DI +L R    + ++           +I       
Sbjct: 338 VETIESLIKQGN----------SRSDIAILYRSNAQSRVLEEAL----LRERIPYRIYGG 383

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IK+ MA  R I  + +D +   ++  P     E  +  I    RH   +++ 
Sbjct: 384 QRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWG 443

Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519
            + +       K          I+ I  L         H     ++         Q+   
Sbjct: 444 AMCQLLAAKALKGRAASALGAFIELIESLAGKVADMPLHTMTQTVVEQSGLIIYHQEEKG 503

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
             G   ++ L+E ++     E       L  L + L        +     + + +++MT+
Sbjct: 504 EKGQARVENLEELVSAARNFETTDDDADLSPLSAFLGHASLEAGEAQADEHEDSIQLMTL 563

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VFLV     +F HK   +                                
Sbjct: 564 HSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG----------------------------- 594

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA  QL +                    V +      +  +
Sbjct: 595 -----RLEEERRLAYVGITRAMRQLFMTYAETRRLYGSETYNKVSRFVREIPPGLVQEVR 649

Query: 698 I 698
           +
Sbjct: 650 L 650


>gi|222035511|emb|CAP78256.1| DNA helicase II [Escherichia coli LF82]
 gi|312948366|gb|ADR29193.1| DNA-dependent helicase II [Escherichia coli O83:H1 str. NRG 857C]
          Length = 720

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|167553866|ref|ZP_02347610.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205321791|gb|EDZ09630.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 720

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|205354488|ref|YP_002228289.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205274269|emb|CAR39288.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 720

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+   + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVDNIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPKRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|319902365|ref|YP_004162093.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108]
 gi|319417396|gb|ADV44507.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108]
          Length = 763

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/603 (15%), Positives = 182/603 (30%), Gaps = 121/603 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + +   Y E  ++   +DF+DL+  T  L +       +  +  ++  +IL+DE QDT+
Sbjct: 175 VRDIYQRYWERCRQADAMDFDDLLFYTFLLFRDHPD---VLARYQEQFRYILVDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q  ++  L ++           R +  VGD+ QSIYSF GA+   +L    +      
Sbjct: 232 FAQHSIVLQLAKN----------HRHVCVVGDDAQSIYSFRGADIDNILYFTEVYP---- 277

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  + +L  ++RST  I+   + +    +        S                  
Sbjct: 278 ----GTKVFKLEQNYRSTQTIVRAANSLIEKNQRQIHKEVFS------------------ 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                      +       + +Y D    E         +   I+ +   +         
Sbjct: 316 ---------KKEEGESIGVYQAYSDVEEGEI--------VVNKIAELHHREHCV------ 352

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D  VL R    + +     R       +               IKD++A  R  +
Sbjct: 353 ---YSDFAVLYRTNAQSRIFEEAMR----KRGMPYRIYGGLSFYQRKEIKDVIAYFRLAV 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQKFANCGIS-------KF 481
           +  D+ +F  ++  P     +  + KI         +++  + +    G+        K 
Sbjct: 406 NPNDEEAFKRIINYPARGIGDTTVGKIIAAATGNNVSLWAVLCEPLTYGLELNKGTAGKL 465

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
           Q     I   I      + ++  T I+               E     + ++E +N    
Sbjct: 466 QGFRDLISGFITDVAEKNAYETGTEIIRRSGIVNDVCQDNSPENLSRKENIEELVNGMSD 525

Query: 539 N------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E N+   L + +SE+             +  ++ +MTVH+AKGLE   VF+V 
Sbjct: 526 FCARRQEEGNANILLVDFLSEVSLLTDQDSD-KDGDDEKITLMTVHSAKGLEFKNVFVVG 584

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F    +                                         EE  RL Y
Sbjct: 585 MEENLFPSGMVGDSP----------------------------------RALEEERRLFY 610

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V +TRA     +          K    +    + D      R+ +  +      +    +
Sbjct: 611 VAITRAEKHCYLSFAKTRFRYGKMEFGSPSRFLKDIDARFLRLPQDVVVGRRIDEGAENF 670

Query: 713 EWS 715
              
Sbjct: 671 RRE 673


>gi|218701273|ref|YP_002408902.1| DNA-dependent helicase II [Escherichia coli IAI39]
 gi|218371259|emb|CAR19093.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI39]
          Length = 720

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|238897279|ref|YP_002922956.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Candidatus Hamiltonella
            defensa 5AT (Acyrthosiphon pisum)]
 gi|229465034|gb|ACQ66808.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Candidatus Hamiltonella
            defensa 5AT (Acyrthosiphon pisum)]
          Length = 1208

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 149/984 (15%), Positives = 310/984 (31%), Gaps = 150/984 (15%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
            I K +  L     + +    +L  ++G       ++ L    +           S F   
Sbjct: 228  IIKQITELKLKWQTTVPDLKTLIDKSGVDKRTYNSRYLPIWLEKITQWAYQESGSYFLPK 287

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    +++I+ ++  K  P         Q     + D      +    +      K +  
Sbjct: 288  ELNRFRQSILFEKTQKGHPP--------QHPLFSLIDFIFFQGLTLRDVVLTKAIKEIRL 339

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
              E+ K++   L F+DL+ N +  LK++     +   I ++   ++IDE QDT   Q+ +
Sbjct: 340  SLEKEKRRRGELSFDDLLKNLDTALKQKG-GNLLSETIRKQYPIVIIDEFQDTDPQQYRI 398

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
              S+                L  +GD KQ+IY+F GA+    +R +              
Sbjct: 399  FHSIY--------AKKKDCGLLLIGDPKQAIYAFRGADIFTYIRARSQI----------A 440

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
                L  ++RS+  I+  V+++F+  E     S+         +    +  T QL     
Sbjct: 441  HQYTLETNWRSSPAIVKAVNQLFTQIETPFLFSQIPFV----EAIASDKNRTYQL----- 491

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKKRV 370
               D +  P    W    + +        ++ + A  I + +         + S+   R 
Sbjct: 492  -TIDKKIQPALHFWLQKGEGITVNQYKKCMSNQCAIEIRDWLTAGQQGRAQLMSDQGVRS 550

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++A DI VLVR R +  L+      L      SV  ++R  + D    KDL+ + + +L+
Sbjct: 551  VKAADIAVLVRTRTEAALVKKALNRLSIP---SVYMSNRDSVFDTPEAKDLLWILQAVLA 607

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             E +    C + + L   + + +  + +     + + +    +      K   V+  + +
Sbjct: 608  PEIEKFLRCAMATSLLGLNTNALQALQSDGQAWDALVDEFHDYRQHWQKK--GVLPMLRK 665

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN---EQNSYSSL 547
            LI   +          +L  ++G ++            L E L         EQ     L
Sbjct: 666  LIFQRR------LAENLLKTQEGERRLTDLL------HLSELLQQISEELDSEQALVRWL 713

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF-SHKHIKKM 606
             + I+E        K     + + ++I+TVH +KGL+  +V+L   G      H    + 
Sbjct: 714  AQKITEFNAESEDQKLRLETDCDLIQIVTVHQSKGLQYSLVWLPFIGYFQHQPHDERAQK 773

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-- 664
             +     +     +    +              +K    E  RLLYV +TR+     I  
Sbjct: 774  EVFYHEPEHCTAVLDFKATHEN-------RALAEKERLSEDLRLLYVALTRSVYHCSIGI 826

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                    +K+         +              L+  + + E      S  +P +  L
Sbjct: 827  APFIKGGRKKQRESDIHLSALGYLIQKGMAGDAQYLSEKLKELEGEHIAVSLANPSDFSL 886

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE------------- 771
             +           +   +         +   + + S++       L+             
Sbjct: 887  WQPTKEPLPELTARHFTRKMQDHWQVTSYSKLQDSSSLTHSTVNRLKTDHILMQELLPSL 946

Query: 772  --------------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
                                S  +  +    G  +H LL+ +      + +         
Sbjct: 947  DTEVITDVMNDPLFSSENSLSPHTFPRGAIPGTFLHDLLERLDFSQSIEIEWLKMQLLQ- 1005

Query: 812  NAKLWPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSVSGKINCPKK---- 860
              K +  K    L   +T +L+ P+       ++     +   E+     I+   +    
Sbjct: 1006 --KGFDEKWLPMLHDWLTEILDTPLNDKRDLSLSKLTEKNKQVELQFHLPIDAMLESSNL 1063

Query: 861  ----------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
                                    I++G ID +   Q   ++ +YK++        +   
Sbjct: 1064 DVLIKKHDPLSALCSTLSFPKVQGILTGFIDLVFFWQDQFYLLDYKSNWLGTSAKAYHRQ 1123

Query: 899  ---------THIAQLSIYEKILKD 913
                      +  Q  +Y   L  
Sbjct: 1124 SIEQAMAEHRYDLQYQLYTLALHR 1147


>gi|261343070|ref|ZP_05970928.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316]
 gi|288314635|gb|EFC53573.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316]
          Length = 720

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/579 (17%), Positives = 183/579 (31%), Gaps = 116/579 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ IQ
Sbjct: 173 VYKAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNNIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L  D             +  VGD+ QSIY + GA+ + + R             
Sbjct: 230 YAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP------- 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST++IL+  + +        G                       LW 
Sbjct: 273 -GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------LW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +  S    F+ L +       AR +   I                   
Sbjct: 310 ------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ------- 349

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                +L R    + ++            +           +   IKD ++  R I ++ 
Sbjct: 350 ---CAILYRSNAQSRVLEEAL----LQVSMPYRIYGGMRFFERQEIKDALSYLRLIANRN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q  +
Sbjct: 403 DDAAFERVVNTPTRGIGDRTLDVVRQASRDRQLTLWQACRELLQEKALAGRAASALQRFL 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE-Q 541
           + I  L         H     ++     R  +    G      I+ L+E +  T +    
Sbjct: 463 ELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYN 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                L  L + L        +       + V++MT+H+AKGLE P VF+V     +F  
Sbjct: 523 EEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                           EE  RL YVG+TRA  
Sbjct: 583 QMSLDEGG----------------------------------RLEEERRLAYVGVTRAMQ 608

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +L +          K         + +         +++
Sbjct: 609 KLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLR 647


>gi|237727929|ref|ZP_04558410.1| DNA helicase II [Citrobacter sp. 30_2]
 gi|226910378|gb|EEH96296.1| DNA helicase II [Citrobacter sp. 30_2]
          Length = 738

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 102/583 (17%), Positives = 184/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 189 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 245

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 246 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLTDFP----- 290

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST +IL+  + +        G                       L
Sbjct: 291 ---GAETIRLEQNYRSTNNILSAANALIENNNGRLGKK---------------------L 326

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 327 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ----- 367

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 368 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 418

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 419 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 478

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ LDE +  T +  
Sbjct: 479 FMELIDALAQETADMPLHVQTDRVIKDSGLRMMYEQEKGEKGQTRIENLDELVTATRQFS 538

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 539 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 598

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 599 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 624

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 625 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEACVEEVRLRAT 667


>gi|72162979|ref|YP_290636.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX]
 gi|71916711|gb|AAZ56613.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX]
          Length = 754

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 113/619 (18%), Positives = 205/619 (33%), Gaps = 126/619 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    Y++   +   +DF+DLI+ T  LL+   +   +     +   H+L+DE QD
Sbjct: 171 RALAEAYQLYQQRLYEAGAMDFDDLIMVTVHLLQ---MFPEVAEHYRRRFRHLLVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +IR L  D     +  +    L  VGD  QSIY+F GA  + +L  +R   + 
Sbjct: 228 TNHAQYALIRELVGD----GDPATPGPELCVVGDADQSIYAFRGATIRNILEFERDYPQ- 282

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I L  ++RST  IL+  + V +     +  +  S                
Sbjct: 283 -------ATTILLEQNYRSTQTILSAANAVIAHNTERRPKNLWS---------------- 319

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       +Q   +        D   +       A  +   I  +    T      
Sbjct: 320 ------------AQGEGEPIVGYVADDERDE-------ATFVVQEIDALTDAGT------ 354

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D+ V  R    + ++  +         +           +   I+D++A  R 
Sbjct: 355 ---CTPGDVAVFYRTNAQSRVLEEVF----VRTGMPYRIVGGVRFYERKEIRDILAYLRV 407

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISK 480
           + + ED +S   +L  P     E     I      E  T  + +++       A   +  
Sbjct: 408 LANPEDSVSLRRILNVPKRGIGERAEQVIEQFAAQERITFAQALRRADEAPGIATRSLKA 467

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
            +  +  + EL  +A   SP +    +L      ++ ++    +    ++ L+EF+    
Sbjct: 468 IKEFVALLEELEELAATRSPAETIEAVLERTGYLEELVNSKDIQDESRVENLEEFVGVAR 527

Query: 538 RNEQNSYSSLQE---------------LISELEQ----YPPTIKRAHSANHNEVRIMTVH 578
             E +  ++L                 L+  LEQ                   V +MT+H
Sbjct: 528 EFESSFDAALAAEGADGETGRDGAEPTLVDFLEQVSLIADTDQLPDEDDQGGAVTLMTLH 587

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE PVVFL      VF H                                  L   
Sbjct: 588 SAKGLEFPVVFLTGLEDGVFPH----------------------------------LRAL 613

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +S  EE  RL+YVG+TRA ++L + + +  S+   +        + +        ++ 
Sbjct: 614 GDRSALEEERRLVYVGITRAQERLYLTRAATRSSWGAAAYNPPSRFLDEIPAELVTWRRA 673

Query: 699 KLTNSINKDEWIAYEWSTH 717
           + T    +        S  
Sbjct: 674 ESTTEALRRSVSPARTSRP 692


>gi|283787510|ref|YP_003367375.1| DNA helicase II [Citrobacter rodentium ICC168]
 gi|282950964|emb|CBG90641.1| DNA helicase II [Citrobacter rodentium ICC168]
          Length = 720

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 185/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIRDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|170769888|ref|ZP_02904341.1| DNA helicase II [Escherichia albertii TW07627]
 gi|170121326|gb|EDS90257.1| DNA helicase II [Escherichia albertii TW07627]
          Length = 720

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGELISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|281425747|ref|ZP_06256660.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302]
 gi|281400155|gb|EFB30986.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302]
          Length = 761

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/617 (16%), Positives = 194/617 (31%), Gaps = 123/617 (19%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +  +        +      + K +   Y++  +K   +DF+DL++    L K+ D  
Sbjct: 151 LPDLYAQDQAALKRDNHNHQPEIYK-IYQTYQQRCQKANAMDFDDLLVLIWRLFKEHDD- 208

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             IR K  ++  ++L+DE QDT+ +Q  ++  L+++           R +  VGD+ QSI
Sbjct: 209 --IRKKYAEQFKYVLVDEYQDTNFVQQCIVLQLSQE----------HRRVCVVGDDAQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F GA    +L  ++I  +          + +L  ++RST  I+   + +    +    
Sbjct: 257 YGFRGANIDNILDFQKIYPE--------TRLFKLEQNYRSTQHIVQAANSLIQHNK---- 304

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                   I          G   +   V S  +                          A
Sbjct: 305 ------RQIPKDVFSCNDKGERLILRPVYSDKE-------------------------EA 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +   I  +   +                 +L R    +       R       I    
Sbjct: 334 AVVCRYIKRLKQKE---------NFNYDSYAILYRTNSQSRSFEEEMR----RQSIPYRI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465
                      IKD++A    + + ED+ +   ++  P     +  + KI    +    +
Sbjct: 381 FGGMSFYQRKEIKDILAYFHMVANPEDEEAIRRIINYPTRGIGDTTVAKIAACAQANDVS 440

Query: 466 VYE-------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            ++       Y     N  ++K +   + I   I  +     +   T I+   K      
Sbjct: 441 FWQIVNSPVKYGLNVTNSTVNKLRSFAELISSFIEKSASTDAYQLGTTIIQKSKINADIF 500

Query: 519 SRFGNE---VIDVLDEFLNFTLRN-------EQNSYSSLQELISELEQYPPTIKRAHSAN 568
           S    E     + ++EFL+             Q  Y+ L + + E+             +
Sbjct: 501 SSNDPEALSRQENVEEFLSGLQDFVEGRREEGQEEYTGLTDFLQEVSLLTDVE-SDDDKD 559

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            N+V +MT+H+AKGLE PVVF+V     +F                              
Sbjct: 560 GNKVSLMTIHSAKGLEFPVVFIVGMEENIFPSPMSANNPRELEEERRLL----------- 608

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                                  YV +TRA    I+    N     K         ++D 
Sbjct: 609 -----------------------YVAITRAEKYCILTCAKNRWRFGKLEFGAPSRFLHDI 645

Query: 689 FHNDERVKKIKLTNSIN 705
             +  R++   LT+ I 
Sbjct: 646 DPSFLRIESDNLTDDIP 662


>gi|88606993|ref|YP_505476.1| UvrD/Rep family helicase [Anaplasma phagocytophilum HZ]
 gi|88598056|gb|ABD43526.1| helicase, UvrD/Rep family [Anaplasma phagocytophilum HZ]
          Length = 659

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 183/549 (33%), Gaps = 120/549 (21%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            A  +   Y+E  K     DF DL+++   +L        +     + + ++++DE QD 
Sbjct: 187 FALRVYEEYQERLKALNCADFGDLLLHNVTILSANPD---VLAHYQEHLRYVMVDEYQDI 243

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ+  +R L              + L  VGD+ QSIY++ GAE   +LR         
Sbjct: 244 NTIQYLWLRLLVR----------RHKNLCCVGDDDQSIYNWRGAEVGNILRFSDDFP--- 290

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +I L  ++RST++IL     +    ++    +                    
Sbjct: 291 -----DAKVIRLECNYRSTSNILASASAIIDNNKSRLKKT-------------------- 325

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW             Q+     +FD   +       A+ I+  I +             
Sbjct: 326 -LW-------THNQAGQKVGLMKFFDGRLE-------AQYISEHIKSSYD---------- 360

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              +  +  VLVR    T +           Y I           D + I+DL+A  + +
Sbjct: 361 --YKFSETAVLVRASFQTRVFEEFF----VRYGIPYKIIGGTKFYDRVEIRDLVAYLKVV 414

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKF 481
           ++  +D++F  ++  P        + K+    R  + ++ E           ++   +  
Sbjct: 415 VNPNNDIAFEKIINKPKRKLGTSTVNKLRAYGRKHSISLTEAGHSMIKDGLLSDNTSNIL 474

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRN 539
           Q ++K   +   +    S  +    I       +        G   I+ + E  +     
Sbjct: 475 QDLLKQFDDWREMLSRDSSVNVLKAIAHDSGYIESLKKDGESGLSRIENIKELFSAVSGF 534

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +      + + +  +         +   ++N V +MT+H AKGLE P+VFL      VF 
Sbjct: 535 D-----DVSKFLEHISLVAEND--SLEEDNNYVHVMTLHAAKGLEFPLVFLPGWEEGVFP 587

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                           EE  RL YVG+TRA 
Sbjct: 588 HEKSMNDITGN--------------------------------ALEEERRLAYVGITRAR 615

Query: 660 DQLIICKHS 668
           +QL I   +
Sbjct: 616 EQLYISCAA 624


>gi|56415805|ref|YP_152880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62182420|ref|YP_218837.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161617070|ref|YP_001591035.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168233884|ref|ZP_02658942.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168238404|ref|ZP_02663462.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168244640|ref|ZP_02669572.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168263159|ref|ZP_02685132.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168822679|ref|ZP_02834679.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194444550|ref|YP_002043181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451500|ref|YP_002047963.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470536|ref|ZP_03076520.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194734777|ref|YP_002116880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197364735|ref|YP_002144372.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198245946|ref|YP_002217880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388338|ref|ZP_03214950.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204930325|ref|ZP_03221302.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|207859153|ref|YP_002245804.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224585766|ref|YP_002639565.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912954|ref|ZP_04656791.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|56130062|gb|AAV79568.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|62130053|gb|AAX67756.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161366434|gb|ABX70202.1| hypothetical protein SPAB_04903 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403213|gb|ACF63435.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194409804|gb|ACF70023.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194456900|gb|EDX45739.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194710279|gb|ACF89500.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197096212|emb|CAR61809.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197288763|gb|EDY28138.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197940462|gb|ACH77795.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199605436|gb|EDZ03981.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204320729|gb|EDZ05931.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205332069|gb|EDZ18833.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205336527|gb|EDZ23291.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205340965|gb|EDZ27729.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205348080|gb|EDZ34711.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206710956|emb|CAR35324.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224470294|gb|ACN48124.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|320088361|emb|CBY98121.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322613028|gb|EFY09979.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617384|gb|EFY14284.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625624|gb|EFY22446.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627047|gb|EFY23840.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631237|gb|EFY28000.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638270|gb|EFY34969.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642794|gb|EFY39381.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322650351|gb|EFY46764.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656358|gb|EFY52652.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657583|gb|EFY53853.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665994|gb|EFY62175.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666733|gb|EFY62910.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671024|gb|EFY67154.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679269|gb|EFY75321.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681673|gb|EFY77700.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686000|gb|EFY81988.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716913|gb|EFZ08484.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323192626|gb|EFZ77854.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196492|gb|EFZ81642.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203756|gb|EFZ88777.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205369|gb|EFZ90343.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210738|gb|EFZ95614.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215906|gb|EGA00639.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221399|gb|EGA05817.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323231768|gb|EGA15879.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236183|gb|EGA20260.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239580|gb|EGA23628.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244324|gb|EGA28332.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249579|gb|EGA33491.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250329|gb|EGA34215.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256536|gb|EGA40267.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259766|gb|EGA43399.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265174|gb|EGA48672.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268397|gb|EGA51869.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326625668|gb|EGE32013.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 720

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|317056307|ref|YP_004104774.1| UvrD/REP helicase [Ruminococcus albus 7]
 gi|315448576|gb|ADU22140.1| UvrD/REP helicase [Ruminococcus albus 7]
          Length = 780

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/550 (17%), Positives = 173/550 (31%), Gaps = 113/550 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y++    N  +DF+D+I +T  L +       +         +I++DE QDT+
Sbjct: 220 VAKIYKKYQKELLANNAMDFDDIICHTVTLFEN---CPDVLDHYQNLYKYIMVDEYQDTN 276

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+ ++  L++ F            +  VGD+ QSIY F GA  + +L  +     R  
Sbjct: 277 RVQFRLVSLLSQKF----------GNICVVGDDDQSIYRFRGATIENILNFEDEFGCRPE 326

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           +      +I+L  ++RST +ILT  +K+ S     +G +                     
Sbjct: 327 D------VIKLEQNYRSTQNILTCANKLISNNVGRKGKN--------------------- 359

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW           +  +       +   +       A  IA T+S               
Sbjct: 360 LW-------TDCGDGDKVIVHKSMNERDE-------ASYIAKTVSENNDNGR-------- 397

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  D  VL R    +  +            I           D   IKD++A    I 
Sbjct: 398 --RFGDHAVLYRMNAQSNALEQAM----IKAGIPYKIFGGLKFYDRKEIKDILAYLEVIN 451

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQH 483
           +  D      ++  P     +  +  I     +      Y+   +   +           
Sbjct: 452 NHADMFRLQRIVNEPKRGIGDATVRTIGQVSSDLGEDPIYVMAHSTEYVPLAKKSKALTE 511

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRNEQ 541
               I +L  +++  S  +    ++           +   G   ++ + E  +   + E+
Sbjct: 512 FAFMIEDLTDLSEEASLPELLDEVVEKTGYGAMMKQQGVEGEMRLENIAELKSTMTKYEE 571

Query: 542 N-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                SL+  + E+  Y          N + V +MT+H AKGLE PVVF+      VF  
Sbjct: 572 EAEDPSLEGFLEEVALYTDIDT--LDENSDYVALMTMHAAKGLEFPVVFVAGMEDNVFPS 629

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
              +                                               YV MTRA +
Sbjct: 630 SRSRDSEAELEEERRLA----------------------------------YVAMTRAKE 655

Query: 661 QLIICKHSNT 670
           QL +      
Sbjct: 656 QLHLIYAGER 665


>gi|58616965|ref|YP_196164.1| DNA helicase II [Ehrlichia ruminantium str. Gardel]
 gi|58416577|emb|CAI27690.1| DNA helicase II [Ehrlichia ruminantium str. Gardel]
          Length = 639

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 108/558 (19%), Positives = 185/558 (33%), Gaps = 122/558 (21%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +      T+A      Y+E  K     DF DL++   ++  K+     I     ++  +I
Sbjct: 159 ELNKPINTIALSTYNIYQERLKFLNCADFGDLLLYNIEIFTKQH---NILSHYQEQFKYI 215

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++DE QD + IQ+  +R L +            + L  VGD+ QSIYS+ GAE   +L+ 
Sbjct: 216 MVDEYQDINTIQYLWLRLLAQ----------KHKNLCCVGDDDQSIYSWRGAEVGNILKF 265

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            I L  ++RST++IL V   + +  ++  G              
Sbjct: 266 SDDFPN--------AKTIRLECNYRSTSNILEVATAIINNNKSRLGKK------------ 305

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW    +  +       + W S  +           A+ I   I N+    
Sbjct: 306 ---------LW---TTNQEGNKVNLMKFWDSRIE-----------AQYICEYIKNLHD-- 340

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                      Q K+  +LVR    T +           Y I           D   I+D
Sbjct: 341 ----------YQFKETAILVRAGFQTRIFEEYF----IKYNIPYRIIGSTRFYDRQEIRD 386

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKF 473
           ++A  +  ++ + D++F  ++  P  N     + KI    +       +         + 
Sbjct: 387 IIAYLKITVNPQHDIAFDRIINKPKRNVGASTLNKIYSYAKQYNTHFLDATKILIENNQL 446

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDE 531
           +        +++  I+         S  +   +I           +    G   I+ + E
Sbjct: 447 SEKTSRSLNNLLNKINSWKESLLSDSISNTVKMIAYDSGYIDMLENEGESGLARIENIKE 506

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR-IMTVHTAKGLESPVVFL 590
             +  L           ++ + LE      +   S + +    IMT+H AKGLE PVVFL
Sbjct: 507 LFSALLNF--------NDVNAFLEHISLVTEVDISNDDDNYTCIMTLHAAKGLEFPVVFL 558

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 VF H                                   ++       EE  RL
Sbjct: 559 PGWEEGVFPH--------------------------------EKSLQDRTGEALEEERRL 586

Query: 651 LYVGMTRASDQLIICKHS 668
            YVG+TRA +QL I   +
Sbjct: 587 AYVGITRAREQLFISCVA 604


>gi|325288901|ref|YP_004265082.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964302|gb|ADY55081.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM
           8271]
          Length = 745

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/648 (15%), Positives = 202/648 (31%), Gaps = 135/648 (20%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           ++  Q      +++      F++       + A  +   Y+   K N  LDF+D+I+ T 
Sbjct: 136 IRAVQGTISDAKNKLLDVNAFEAAATDFFSSAAAKVYRLYQRKLKDNNGLDFDDIIMLTV 195

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            + +++     +     ++  +IL+DE QDT+  Q+ +I  L +            R L 
Sbjct: 196 RIFREQPD---VLGYYQEKFRYILVDEYQDTNHAQYLLINLLAK----------RRRNLC 242

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QS+Y + GA+ + +L  +R   +          +++L  ++RST  IL   + V
Sbjct: 243 VVGDDDQSVYGWRGADVQNILDFERDYPE--------AKVLKLEQNYRSTGKILEAANAV 294

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                N +  +  +   +                             +   + +  +   
Sbjct: 295 VDHNRNRKKKALWTENPV---------------------------GEELVLYRAENEHDE 327

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                   AR +  +I+++  T+   +          D  VL R    + ++        
Sbjct: 328 --------ARFVCRSINHLKDTEGRSN---------SDFTVLYRTNAQSRVLEEHL---- 366

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               I           + L IKD++A  R + +  D +SF  ++  P        + KI 
Sbjct: 367 MKEGIPYRIFSGTKFYERLEIKDILAYLRLVYNPADTVSFARVVNVPRRGIGAGSLEKIL 426

Query: 458 TQRHETE-------TVYEYIQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILG 509
               E         +  +YI      G+         + ++   A    +  +    +L 
Sbjct: 427 EYAQEQGMPVLNALSEAQYIPGLQTKGVKALDAFYHLLEDIRRKAGEGLTVTELTESLLS 486

Query: 510 AKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-----------------QNSYSSLQE 549
                 +  +    E     + L+EFL+ T   +                 Q+    L  
Sbjct: 487 ETGYLAELRAEDSPEANARLENLNEFLSVTEEFDANLEDDTEEDNENNTGVQDPMPRLAG 546

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            + ++             N + V++MT+H+AKGLE PVVF V     +F          +
Sbjct: 547 FLEQVSLVAEIDHYD--ENEDAVKLMTMHSAKGLEFPVVFTVGLEENIFPSSRSLLEEYL 604

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                                     YV +TRA ++L +     
Sbjct: 605 LEEERRL----------------------------------CYVAITRAREKLFLTYTIE 630

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                +         + +        +         +      +    
Sbjct: 631 RMIYGRIQNSLPSRFLKEIPEQLIFNQSPAAAGREKEASAAEGKVRRD 678


>gi|282881333|ref|ZP_06290013.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis
           CRIS 5C-B1]
 gi|281304809|gb|EFA96889.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis
           CRIS 5C-B1]
          Length = 808

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 122/773 (15%), Positives = 227/773 (29%), Gaps = 136/773 (17%)

Query: 8   SLNESYELIYKDLWPLPYF--QVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           + NE  E I + +         +   +   +  + +    +       +         + 
Sbjct: 63  AANEMKERIGQLVGHQTARYINMGTFHSIFARILRSEAARV-----GYRSGFTIYDESDS 117

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            SLL +    ++      I           +   +  +++  I  +      ++      
Sbjct: 118 RSLLKAII--KEMELDDKIYKPA------GVHAVISNAKNRLISPQSYAANAELMLRDQK 169

Query: 126 SLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           S       +   Y +  +K   +DF+DL++ T  L K  +    IR K  +   ++L+DE
Sbjct: 170 SRRFELHRIYDVYVQRCRKANAMDFDDLLVLTYQLFKTHED---IRQKYVERFRYVLVDE 226

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+  Q  ++  LT+D           + +  VGD+ QSIY F GA    +L  ++I 
Sbjct: 227 YQDTNYAQQCIVWELTKD----------HQHICVVGDDAQSIYGFRGANIDNMLDFEQIY 276

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
           +           + +L  ++RST  I+   + +    E            I         
Sbjct: 277 E--------GARLFKLEQNYRSTQHIVKAANSLIKHNE----------RQIPKDVYSEND 318

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            G   L++ V S  +                          A  +   I  ++ TD    
Sbjct: 319 QGEKLLFKPVYSDKE-------------------------EALVVCKDIQRIMRTD---- 349

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                     D  +L R    +               I               IKD++A 
Sbjct: 350 -----GATYSDFAILYRTNAQSRSFEEEM----LRQHIPYRIYGGLSFYQRKEIKDILAY 400

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-------NC 476
            R +++ +D+ +F  ++  P        + KI    +    + ++ I +           
Sbjct: 401 FRLVVNPDDEEAFKRIINYPTRGIGNTTLQKIAASAQEHGISFWQVIAQAPTLLPTVNKG 460

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
             +K     + I   I              IL          S    E     + ++E L
Sbjct: 461 TQTKLLRFKELIEGFIAQLNQADAFKLGRDILQTSGISTDIYSNNDPEGLARQENVNELL 520

Query: 534 NFTLRN-EQNSYSSLQE---LISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                  E      L++   L   L+     T   +   + ++V +MTVH AKGLE P V
Sbjct: 521 AGLQDYTESKREEGLEQEVYLPDYLQSVALLTDLDSDDGSDSKVSLMTVHAAKGLEFPTV 580

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F+V     +F                                              EE  
Sbjct: 581 FIVGLEENIFPSPMAIDSPC----------------------------------ELEEER 606

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN-DERVKKIKLTNSINKD 707
           RLLYV +TRA    I+    N     K    T    + D          + +  +     
Sbjct: 607 RLLYVAITRAEKHCILTSAKNRWRYGKLEFDTPSRFIKDIDSRFIHIEAEEETIDESIFA 666

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
            +    +S           + +       Q   K   + ++         + S
Sbjct: 667 PYSGSHFSGDGNRRYSDRMQNSRPVASQFQADVKPKITSVQRPEQAVDPFSSS 719


>gi|84393655|ref|ZP_00992406.1| DNA helicase II [Vibrio splendidus 12B01]
 gi|84375723|gb|EAP92619.1| DNA helicase II [Vibrio splendidus 12B01]
          Length = 724

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/548 (17%), Positives = 185/548 (33%), Gaps = 116/548 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           + + Y+EA  +  ++DF ++++ +++LL+       IR        HIL+DE QDT+ IQ
Sbjct: 174 IYSAYQEACDRAGLVDFAEILLRSHELLRD---KKHIREHYQARFKHILVDEFQDTNNIQ 230

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R +                +  VGD+ QSIY + GA+ + + +             
Sbjct: 231 YAWLRMMAG----------PDCRVMIVGDDDQSIYGWRGAKIENIQKFLDEFP------- 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              S + L  ++RST  IL   +++ S      G                      +LW 
Sbjct: 274 -GASTVRLEQNYRSTKTILQASNELISNNTERMGK---------------------ELW- 310

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +  S  S ++ L +       AR     I                   
Sbjct: 311 ------TDGNDGEPISVYSAYNELDE-------ARFTVSKIKEWQEKGGALE-------- 349

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            +           +   I+D ++  R + ++ 
Sbjct: 350 --DTAMLYRNNAQSRVLEEAL----IQGGLPYRIYGGMRFFERQEIRDALSYLRLMSNRS 403

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485
           +D +F  ++ +P     +  +  I    R    T+++                      I
Sbjct: 404 NDAAFERVVNTPTRGLGDKTLETIRLAARDRGATMWQASIALIEEQVLPGRAAGALSRFI 463

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L         H+    ++ +      +    G +    I+ L+E +  T + E+ 
Sbjct: 464 ELINALEDDTIELRLHEQTDHVIKSSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKP 523

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                +  L + L        +       + V++MT+H+AKGLE P+VF+V     +F  
Sbjct: 524 EEADEMSMLTAFLTHAALEAGEGQADEFDDAVQLMTLHSAKGLEFPMVFMVGVEEGMFPS 583

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                      +    EE  RL YVGMTRA +
Sbjct: 584 QMS----------------------------------AEEAGRLEEERRLCYVGMTRAME 609

Query: 661 QLIICKHS 668
           +L I    
Sbjct: 610 KLYITYAE 617


>gi|306843240|ref|ZP_07475850.1| DNA helicase II [Brucella sp. BO2]
 gi|306286563|gb|EFM58142.1| DNA helicase II [Brucella sp. BO2]
          Length = 863

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/699 (16%), Positives = 197/699 (28%), Gaps = 156/699 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPR----------------------------------TL 216
            Q+  +R L +          + +                                   L
Sbjct: 269 AQYLWLRLLAQRPQTRNTAPDTAQGRNAPIQPARASEPMRGPRGAGERSELGVSENKVNL 328

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ QSIY + GAE   +LR ++              +I+L  ++RSTA IL     
Sbjct: 329 CCVGDDDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAH 380

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           + +  E   G +  +                               +  +    + +DS 
Sbjct: 381 LIAHNEGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSE 414

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +       AR +   I        + +N          + +LVR              L
Sbjct: 415 EE-------ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL 457

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I
Sbjct: 458 ----GLNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQI 513

Query: 457 C-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               R    +++          +      S  + V++       +       +    IL 
Sbjct: 514 HDYARARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILD 573

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                  + +    E    ++ L E +      E         L   LE     +    +
Sbjct: 574 ESGYTAMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQN 625

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            + + V IMT+H+AKGLE   VFL      +F H+                         
Sbjct: 626 EDMDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQR------------------------ 661

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                    +    +S  EE  RL YVG+TRA   L I   SN                 
Sbjct: 662 --------ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------I 699

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                     +          E    E +         +                     
Sbjct: 700 HGMWQSTIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRA 759

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
            +N  +       S   ++ +              RG +
Sbjct: 760 QQNRSDATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 798


>gi|302187828|ref|ZP_07264501.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae 642]
          Length = 727

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 121/684 (17%), Positives = 220/684 (32%), Gaps = 125/684 (18%)

Query: 23  LPYFQVSDINKYVSLSME-TGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                   I + + +S       T    A  L +A   +        L   F       Q
Sbjct: 68  AAAEMRHRIEQLMGISPAGMWGGTFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQ 121

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           + ++ + + +   D +    +    FI  +  +      +  S    LT  K +   YE 
Sbjct: 122 QRLVKRVMRELGLDEQRWPARQAQWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEI 181

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           A ++  V+DF +L++   DL +       +     +   H+L+DE QDT+ +Q+  +R L
Sbjct: 182 ACQRAGVIDFSELLLRALDLWRDNPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLL 238

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
            +             +L  VGD+ QSIY + GA+ + + +                 +I 
Sbjct: 239 AQ----------GGDSLMVVGDDDQSIYGWRGAKIENIHQYSSDFP--------DTEVIR 280

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RSTA IL   + +        G                      +LW        
Sbjct: 281 LEQNYRSTASILKAANGLIINNSGRLGK---------------------ELW-------T 312

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
              + +  +  + F+   +       AR +  TI + + T           I   DI +L
Sbjct: 313 DVGDGELINLYAAFNEHDE-------ARYVVETIESALKTG----------ISRNDIAIL 355

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    + ++           +I           +   IK+ MA  R +  + +D +   
Sbjct: 356 YRSNAQSRVLEEAL----LRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALER 411

Query: 440 MLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELI 492
           ++  P     E  +  I    RH   +++E ++             +     I+ I  L 
Sbjct: 412 VINVPARGIGEKTVEAIREHARHADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLA 471

Query: 493 HIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQ 548
                   H     ++         +Q     G   ++ L+E ++     E +     L 
Sbjct: 472 AKVMEMPLHLMTQTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLT 531

Query: 549 ELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            L + L              + + +++MT+H+AKGLE P VFLV     +F HK   +  
Sbjct: 532 PLAAFLGHASLEAGDTQAQEHEDSIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEP 591

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                                EE  RL YVG+TRA  QL++   
Sbjct: 592 G----------------------------------RLEEERRLAYVGITRAMKQLVMTYA 617

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHN 691
                            V +    
Sbjct: 618 ETRRLYGSETYNKVSRFVREIPPA 641


>gi|118595284|ref|ZP_01552631.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
 gi|118441062|gb|EAV47689.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
          Length = 725

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/550 (18%), Positives = 189/550 (34%), Gaps = 122/550 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+   K  V+DF +L++   +L + + +   IR        HIL+DE QDTS +
Sbjct: 177 AIYKAYEDQCLKEGVVDFAELLLRCLELFQNKPM---IREHYQSIFKHILVDEFQDTSKL 233

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E ++ LT               +FAVGD+ QSIY F GA P  +   ++         
Sbjct: 234 QYEWLKLLTA----------KNSFIFAVGDDDQSIYGFRGARPGNMKDLQKDF------- 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +  +II+L  ++RS  +IL   + +     +  G +                     LW
Sbjct: 277 -KINNIIKLEQNYRSKNNILNAANAIIENNADRLGKN---------------------LW 314

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  ++        + +  D              I   I  +  + +          
Sbjct: 315 S------EAGDGDLIRQYNALDDRFETS--------YILDEIKGLHRSGS---------- 350

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +   I +L R    + +I            I           +   IK  +A  R I ++
Sbjct: 351 RYDQIAILYRNNAQSRVIEMAM----VSNNIPYRVYGGLRFFERAEIKSSLAYLRLITNK 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS-KFQHVIKYIH 489
           +DD +F+ ++  P        +  I      E  ++++  ++  +   + K    +  I 
Sbjct: 407 KDDTAFLRIINFPPRGIGAKALELIQDVANAEKISLWQSAERIESENKNTKISFFVHLIR 466

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN--------- 539
            +    +  +  +    I      +  +   + G+  I+ LDE ++              
Sbjct: 467 HIEDQIEGNNIDESIDFINSYSTLKDHYGKDKDGSSRIENLDELVSAAKAYINEFREENT 526

Query: 540 EQNSYSS----LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           E  S  S    L + +         +    SA  + +++MT+H++KGLE   VF+     
Sbjct: 527 ENESGDSKASILSDFLDFTSLESGEL--QASAGDDALQLMTIHSSKGLEFDTVFITGLEE 584

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +  H+                                      + +  EE  RL+YV +
Sbjct: 585 GLCPHERSLS----------------------------------ENNGLEEERRLMYVAV 610

Query: 656 TRASDQLIIC 665
           TRA  +L + 
Sbjct: 611 TRARQKLYLT 620


>gi|317124193|ref|YP_004098305.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043]
 gi|315588281|gb|ADU47578.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043]
          Length = 854

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 111/736 (15%), Positives = 220/736 (29%), Gaps = 151/736 (20%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P      V   +      +      +      ++         +  
Sbjct: 139 AAAEMRERVEALVGPRARSMWVMTFHSACVRILRREAAKV-----GMKSTFSIYDAADSL 193

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+S         P K    +  + +  +LK  L   +    ++ +  + +   + T+++
Sbjct: 194 RLMSLVIRDLDLDP-KRYAPRSFSAQVSNLKNDLVDEETYAAQVGEGTSAHSHHERTMSA 252

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   ++   LDF+D+I+ T ++L+       +     +   HIL+DE Q
Sbjct: 253 A------YTQYQRRLRQANALDFDDIIMMTVNMLQ---AFPDVAEYYRRRFRHILVDEYQ 303

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHS---SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           DT+L Q+++I+ L  D   G         P  L  VGD  QSIY+F GA  + +L  ++ 
Sbjct: 304 DTNLAQYQLIKELVGDGVRGPGEGDYVVPPAELCVVGDSDQSIYAFRGASIRNILEFEQD 363

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         I L  ++RST  IL   + V +  E  +  +               
Sbjct: 364 YP--------DARTILLEQNYRSTQRILRAANSVIARNEARRAKN--------------- 400

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 LW           +          +   +       A  +A  I  +       
Sbjct: 401 ------LW-------TDSGDGALIVGYVADNEHDE-------AAFVAKQIDELAEHG--- 437

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                  ++  D+ +  R    +  I  +         +           +   +KD +A
Sbjct: 438 -------VRPGDVAIFYRTNAQSRAIEEVL----VRVGLPYKVVGGTRFYERREVKDALA 486

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANC 476
             R I +  D ++   +L  P     +     +          +       E     A  
Sbjct: 487 YLRVISNPTDTVNLRRILNVPKRGIGDRAEACVAMLAERERIPFVAALGRAEDAPGIATR 546

Query: 477 GISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
            ++  +     + EL  + +  +         L       +  +    +    ++ L E 
Sbjct: 547 SVAAIKGFTSLLEELRTVYESGAGIAVLLEATLEQSGYLAELRASHDPQDETRVENLAEL 606

Query: 533 LNFTLRNEQNSYSS------------------------LQELISELEQYPPTIKRAHSAN 568
           +      ++                             L+E + ++       +   S  
Sbjct: 607 VAVAQEYDERRAEEFAVAAIEGGLAPGEEPEDVGPTGPLEEFLEQVSLVADADEIPDSPE 666

Query: 569 HNE------VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
            +       V +MT+HTAKGLE PVVFL       F H                      
Sbjct: 667 ADAGPDLGVVTLMTLHTAKGLEFPVVFLTGLEDGTFPHSRSMGDP--------------- 711

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                 EE  RL YVG+TRA ++L + + +  S           
Sbjct: 712 -------------------KELEEERRLAYVGITRARERLYLTRAAVRSAWGAPQYGAPS 752

Query: 683 DMVYDSFHNDERVKKI 698
             + +   +    +++
Sbjct: 753 RFLDEIPDDLLDWQRL 768


>gi|206890688|ref|YP_002249662.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742626|gb|ACI21683.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 699

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/546 (18%), Positives = 179/546 (32%), Gaps = 123/546 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y+   K+   LDF+DLI+    L  + +    +  +  ++  +IL+DE QDT+
Sbjct: 169 LGRIYMRYQNELKRYNALDFDDLILCVIKLFNENED---LLRRYSEQFKYILVDEFQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +++ L              + + AVGD+ QSIY F GA    +L  ++       
Sbjct: 226 KSQYMLLQLLCRY----------HKNICAVGDDDQSIYKFRGANIHNILNFEKDFP---- 271

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  I++L  ++RST  I+     + S     +                        
Sbjct: 272 ----DTKIVKLEQNYRSTKHIILASSAMISRNTMRKPKI--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW         +   ++  +    +   +       A+ IA  I  +             
Sbjct: 307 LW-------TERDWGEKIFYCQLNNEEEE-------AKYIAKNIKELYLKG--------- 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + KD  +L R       +    R       I               IKD++A  RFIL
Sbjct: 344 DYEYKDFAILYRLVLQARALEEALRME----GIPYQVISGVSFYHRKEIKDVLAYMRFIL 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQ 482
           ++ED++S + ++ +P        I KI    +    + +E I++             K  
Sbjct: 400 NKEDNVSLMRIINTPPRGIGASAISKIESEAKKYMISTFEAIKRIIKEDTVSATLKEKLV 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             +  I EL     +         IL      ++       + I  + EFL+        
Sbjct: 460 SFVTLIDEL-SEKDYKDAASMIKDILNFTGYLEEIE----EDRIQNVLEFLSSA------ 508

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               ++E + ++  +            N V ++T+H AKGLE PVVF+      +     
Sbjct: 509 EKMPVREFLDKVALFSNVDTW--ENKKNYVSLLTLHAAKGLEFPVVFIAGCEEGILP--- 563

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     +E  RL YVGMTRA + L
Sbjct: 564 -------------------------------YFKALEDPFELQEERRLFYVGMTRAKNLL 592

Query: 663 IICKHS 668
            I    
Sbjct: 593 FITSVK 598


>gi|58578906|ref|YP_197118.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
 gi|58417532|emb|CAI26736.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
          Length = 639

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 108/558 (19%), Positives = 186/558 (33%), Gaps = 122/558 (21%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +      T+A      Y+E  K     DF DL++   ++  K+     I     ++  +I
Sbjct: 159 ELNKPINTIALSTYNIYQERLKFLNCADFGDLLLYNIEIFTKQH---NILSHYQEQFKYI 215

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++DE QD + IQ+  +R L +            + L  VGD+ QSIYS+ GAE   +L+ 
Sbjct: 216 MVDEYQDINTIQYLWLRLLAQ----------KHKNLCCVGDDDQSIYSWRGAEVGNILKF 265

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            I L  ++RST++IL V   + +  ++  G              
Sbjct: 266 SDDFPN--------AKTIRLECNYRSTSNILEVATAIINNNKSRLGKK------------ 305

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW    +  +       + W S  +           A+ I   I N+    
Sbjct: 306 ---------LW---TTNQEGNKVNLMKFWDSRIE-----------AQYICEYIKNLHD-- 340

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                      Q K+  +LVR    T +           Y I           D   I+D
Sbjct: 341 ----------YQFKETAILVRAGFQTRIFEEYF----IKYNIPYRIIGSTRFYDRQEIRD 386

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KF 473
           ++A  +  ++ + D++F  ++  P  N     + KI    +       +  +      + 
Sbjct: 387 IIAYLKITVNPQHDIAFDRIINKPKRNVGASTLNKIYSYAKQYNTHFLDATKILIEDNQL 446

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDE 531
           +        +++  I+         S  +   +I           +    G   I+ + E
Sbjct: 447 SEKTSRSLNNLLNKINSWKESLLSDSISNTVKMIAYDSGYIDMLENEGESGLARIENIKE 506

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR-IMTVHTAKGLESPVVFL 590
             +  L           ++ + LE      +   S + +    IMT+H AKGLE PVVFL
Sbjct: 507 LFSALLNF--------NDVNAFLEHISLVTEVDISNDDDNYTCIMTLHAAKGLEFPVVFL 558

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 VF H                                   ++       EE  RL
Sbjct: 559 PGWEEGVFPH--------------------------------EKSLQDRTGEALEEERRL 586

Query: 651 LYVGMTRASDQLIICKHS 668
            YVG+TRA +QL I   +
Sbjct: 587 AYVGITRAREQLFISCVA 604


>gi|57238970|ref|YP_180106.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
 gi|57161049|emb|CAH57956.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden]
          Length = 639

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 108/558 (19%), Positives = 186/558 (33%), Gaps = 122/558 (21%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +      T+A      Y+E  K     DF DL++   ++  K+     I     ++  +I
Sbjct: 159 ELNKPINTIALSTYNIYQERLKFLNCADFGDLLLYNIEIFTKQH---NILSHYQEQFKYI 215

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++DE QD + IQ+  +R L +            + L  VGD+ QSIYS+ GAE   +L+ 
Sbjct: 216 MVDEYQDINTIQYLWLRLLAQ----------KHKNLCCVGDDDQSIYSWRGAEVGNILKF 265

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            I L  ++RST++IL V   + +  ++  G              
Sbjct: 266 SDDFPN--------AKTIRLECNYRSTSNILEVATAIINNNKSRLGKK------------ 305

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW    +  +       + W S  +           A+ I   I N+    
Sbjct: 306 ---------LW---TTNQEGNKVNLMKFWDSRIE-----------AQYICEYIKNLHD-- 340

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                      Q K+  +LVR    T +           Y I           D   I+D
Sbjct: 341 ----------YQFKETAILVRAGFQTRIFEEYF----IKYNIPYRIIGSTRFYDRQEIRD 386

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KF 473
           ++A  +  ++ + D++F  ++  P  N     + KI    +       +  +      + 
Sbjct: 387 IIAYLKITVNPQHDIAFDRIINKPKRNVGASTLNKIYSYAKQYNTHFLDATKILIEDNQL 446

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDE 531
           +        +++  I+         S  +   +I           +    G   I+ + E
Sbjct: 447 SEKTSRSLNNLLNKINSWKESLLSDSISNTVKMIAYDSGYIDMLENEGESGLARIENIKE 506

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR-IMTVHTAKGLESPVVFL 590
             +  L           ++ + LE      +   S + +    IMT+H AKGLE PVVFL
Sbjct: 507 LFSALLNF--------NDVNAFLEHISLVTEVDISNDDDNYTCIMTLHAAKGLEFPVVFL 558

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 VF H                                   ++       EE  RL
Sbjct: 559 PGWEEGVFPH--------------------------------EKSLQDRTGEALEEERRL 586

Query: 651 LYVGMTRASDQLIICKHS 668
            YVG+TRA +QL I   +
Sbjct: 587 AYVGITRAREQLFISCVA 604


>gi|157825751|ref|YP_001493471.1| DNA helicase II [Rickettsia akari str. Hartford]
 gi|157799709|gb|ABV74963.1| DNA helicase II [Rickettsia akari str. Hartford]
          Length = 653

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/567 (19%), Positives = 190/567 (33%), Gaps = 121/567 (21%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                + L    +AK +   Y++    + VLDF DL++  N+L  K      I     ++
Sbjct: 159 LSASDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNPA---ILRYYQEK 215

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +ILIDE QDT+++Q+   R L   +          + +  VGD+ QSIY + GAE   
Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +LR ++             +II+L  ++RST  IL     V +  +N  G +        
Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW       D +   + +  + + D           AR IA  I  +
Sbjct: 310 -------------LW------TDKESGEKIKIISCWSDKEE--------ARYIASEIDKL 342

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +  +            A +I +LVR    T            +  +           + +
Sbjct: 343 VREER---------YNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGVRFYERI 389

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475
            I+D++A  R  L+Q D+L+   ++  P        + KI         + +  I++   
Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRLYALERNISNFASIKEMLE 449

Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
            G  K       + ++  I     I    +P +    IL      +        E    I
Sbjct: 450 MGEIKAKQYETLKDLVTKIDNWHEIFNIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584
           + ++E L                    +E     ++           V IMT+H AKGLE
Sbjct: 510 ENINEMLKAIAEFNDAH--------DFIEHSSLVMENEVLETNYGGAVTIMTLHAAKGLE 561

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVFL      +F  +                                       +   
Sbjct: 562 FDVVFLPGWEEGLFPSQRSLD--------------------------------KDGEKGL 589

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671
           EE  R+ YVG+TRA   L I    +  
Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616


>gi|34580461|ref|ZP_00141941.1| DNA helicase II [Rickettsia sibirica 246]
 gi|28261846|gb|EAA25350.1| DNA helicase II [Rickettsia sibirica 246]
          Length = 653

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/567 (19%), Positives = 190/567 (33%), Gaps = 121/567 (21%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +  + L    +AK +   Y++    + VLDF DL++  N+L  K    + I     ++
Sbjct: 159 LSVSDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN---SEILRYYQEK 215

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +ILIDE QDT+++Q+   R L   +          + +  VGD+ QSIY + GAE   
Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +LR ++             +II+L  ++RST  IL     V +  +N  G +        
Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW     +   +       W+   +           AR IA  I  +
Sbjct: 310 -------------LW---TDRESGEKIKIISCWSDKEE-----------ARYIASEIDKL 342

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +               A +I +LVR    T            +  +           + +
Sbjct: 343 VRE---------NRYNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475
            I+D++A  R  L+Q D+L+   ++  P        + KI         + +  I++   
Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRGYALERNISNFAAIKEMLE 449

Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
            G  K       + ++  I          +P +    IL      +        E    I
Sbjct: 450 IGEIKAKSYETLKDLVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584
           + ++E L               ++   +E     ++           V IMT+H AKGLE
Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVFL      VF  +                                       +   
Sbjct: 562 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGEKGL 589

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671
           EE  R+ YVG+TRA   L I    +  
Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616


>gi|269977462|ref|ZP_06184434.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
 gi|306819108|ref|ZP_07452822.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
 gi|269934378|gb|EEZ90940.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
 gi|304648084|gb|EFM45395.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
          Length = 900

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/700 (14%), Positives = 201/700 (28%), Gaps = 104/700 (14%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L   +V                 + ++ +TL   +        
Sbjct: 78  GAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERVETLVGNAAKYMWVST 137

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F         +   +  +T+ F+      T+ +  +    +         K         
Sbjct: 138 FHSSCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNA 197

Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++       F    A      L   + A Y++  ++    DF+DLI     L ++     
Sbjct: 198 KNELVEPATFAEMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPE-- 255

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRTLFAVGDE 222
            I  K   +  ++L+DE QDT+  Q++++R L  D        G         L  VGD 
Sbjct: 256 -ILAKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS 314

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY+F GA  + +   ++             + + L  ++RST  IL+V + + S   
Sbjct: 315 DQSIYAFRGATIRNIEEFEQDFP--------GATTVYLEQNYRSTGTILSVANAIISENS 366

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                +                     LW       ++   P+   + +         + 
Sbjct: 367 GRHKKN---------------------LW------TEAGDGPKAIMFAA--------DTE 391

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  I   I +     T             +  V  R    +  +  +         +
Sbjct: 392 RDEAAFIIREIRDAHTAGTP----------WDEFAVFYRTNSQSRALEEML----TRENV 437

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                      D   IKD +A      +  DD + + +L  P     +    KI      
Sbjct: 438 PYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLGDVAQTKIREAARL 497

Query: 463 TETVYEYIQK-----------FANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGA 510
           + T +    +            +    +    ++  +  L  + +      +     L  
Sbjct: 498 SGTSFGQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDEAGAPLDEILGTALED 557

Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHS 566
                +  +    +    I+ L E          +   S L + +  +     T +    
Sbjct: 558 SGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFLERISLVADTDQLPDQ 617

Query: 567 ANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            +     + M  H  +      V          + +   ++ +M            +  +
Sbjct: 618 GSKEVAAKEMAPHEPE----TNVSEASGDHPNPAPETKPEVTLMTVHTAKGLEFNTVFVT 673

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              + +             EE  RL YV +TRA  QL + 
Sbjct: 674 GMEDGLFPHSRSLDDPEAIEEERRLAYVAVTRARRQLYLT 713


>gi|145218885|ref|YP_001129594.1| UvrD/REP helicase [Prosthecochloris vibrioformis DSM 265]
 gi|145205049|gb|ABP36092.1| UvrD/REP helicase [Chlorobium phaeovibrioides DSM 265]
          Length = 1065

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 137/970 (14%), Positives = 304/970 (31%), Gaps = 140/970 (14%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGN---PTILKKAQTLQQASQTQCIEERFS 67
            E  E +   L       +      +S + E        +    + L++AS++  ++  + 
Sbjct: 189  EDAETLKAALLRAVENTLEAFPLDISNTYELKAGPKKKVWNNYRLLKRASRSTTLDTDWK 248

Query: 68   LLSSF----FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            L        F  +          + + ++  D   K+  + +    +          +  
Sbjct: 249  LWHKLSQLHFYKKD---------KPLPQEYNDHIVKVIATAERL--VYHPGPLADAQEHA 297

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               L  A    A YE+ K K  +LDF D++  +  L K+      +     + +  +++D
Sbjct: 298  ARLLRAAGETLAGYEKEKGKRGLLDFMDMLSISYRLFKEHP---EVLALFRRRMECLVVD 354

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +Q+ ++ SL +                 VGD KQ+I  F  A+ + +      
Sbjct: 355  EFQDTSPLQFSLVWSLRKT--------EPTVPAIVVGDVKQAIMGFQNADERLLAEMSNK 406

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                            L  ++RS+ +++  +++V         +  +  T +  ++    
Sbjct: 407  YPTS-----------PLEGNWRSSPELMRWINQV------GGAMFHEGYTALEAKAKFRS 449

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
             +  +++        +                       +  A      I  +I T    
Sbjct: 450  SMEPLEIIAAAEPLKE-----------------------AAWASYTVNRIQELIATKQQV 486

Query: 364  SNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             + K    R I+  DI ++  K K         R       I     +   L D   ++ 
Sbjct: 487  WDKKLNVPRDIRGGDIAIICYKNKRLTFYAEALR----KAGIRCRLEEEGWL-DSRIVQL 541

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
                  ++    D       L           +    T   E   V +            
Sbjct: 542  AWQCLAYVADPGDR---HAALYLASTELGTGSLQSALTGLMEGGAVGD------------ 586

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRN 539
               +++ +  +    +  +       I+              G E    L +  +  ++ 
Sbjct: 587  --RILEKLEGVAERPKDRTVDAILDDIVTTLDLYGTITGWPDGAEARADLLKLQDECIQF 644

Query: 540  EQNSYSSLQE----------LISELEQYPPTIKRAHSA----------NHNEVRIMTVHT 579
              +S  +L             ++ L+        A             +   V++MT H 
Sbjct: 645  MTSSREALSSGGYYGSGIKTFLAWLKAKMEATDSAGRENNTRPSPSIIDEEAVQLMTWHK 704

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---PGIPIWIPQSKSRNNIVSDLI 636
            +KG E PVV +       F      K+      + D       + I    S        +
Sbjct: 705  SKGGEWPVVAVCGMDDGEFPRLPNTKVDYDDFSDLDTIMDHAWVRIHPKFSSKEKNDAFV 764

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            + LK  + E   RLLYV +TRA +++I+             Q T++     +   +   K
Sbjct: 765  EDLKPESHENTKRLLYVALTRAREKVILEWPEYLPKTNGKWQGTYWAEFCRAAKAEVTPK 824

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             + +               T   E      E ++            +  P+  +   P  
Sbjct: 825  GMSIKGVEFSCPVSTITLKT-GIEIEAASTESSLPVFGRRAIRRSTMPEPLTPEAVRPSS 883

Query: 757  L-NPSTIDTKGKTNLESLLSD-------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            L N S      + ++             +    +G I+H+  +++   PE +        
Sbjct: 884  LHNDSGAAGTPREDIRYGKGFAIDIPGVDDPMEKGKILHRAFELLSGHPERE-----ELL 938

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-SEVSVSGKINCPKKDIIISGR 867
                  L    + K +  ++     +  + +  +  +  +E+ +   +       +++G 
Sbjct: 939  AGAFEGLLAPGQLKPVYEAVRAF--DSWLGSRFTAITRHAELPL---LALDASGSVVAGF 993

Query: 868  IDQISISQQNIFIFEYKTHHHVPQE-IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI- 925
             D +  ++  ++I ++K+      E +E     ++ QL  Y   L  + P+K +  L++ 
Sbjct: 994  TDLVVETEDALWIVDHKSDQVKTDELLEERFNIYLPQLRCYADALAAARPDKPVKGLMLN 1053

Query: 926  YVSEPKVFII 935
            +VS  K+ ++
Sbjct: 1054 WVSFGKISVV 1063


>gi|163839113|ref|YP_001623518.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209]
 gi|162952589|gb|ABY22104.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209]
          Length = 797

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 118/773 (15%), Positives = 225/773 (29%), Gaps = 141/773 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   +        +S  +      +     T+      L  +       +  
Sbjct: 90  AAAEMRERIAALIGDAAKNMWISTFHSSCVRILRREASTV-----GLNSSFSIYDSADSL 144

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    + +  K   LK +L           D F            
Sbjct: 145 RLITLIARGLDLDP-KRFAPKAMQHKISALKNELIDDDAFAATATDPFEQG--------- 194

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  ++   LDF+DLI  T  L +       +     +   H+++DE Q
Sbjct: 195 ---VAEVYRGYTQRLRQANALDFDDLIAQTVWLFR---AFPGVADYYRRRFRHVMVDEYQ 248

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ +++ +       + +   P  L  VGD  QSIY+F GA+ + ++  ++    
Sbjct: 249 DTNHAQYALVKEIVG---PAEGSGDEPAELTVVGDSDQSIYAFRGADIRNIVEFEKDYPN 305

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I+L  ++RST  IL+  + V     +                       
Sbjct: 306 --------ARTIKLEQNYRSTQTILSAANAVIEKNPDRPVKR------------------ 339

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW        ++ + ++       +   +       AR IA  I  +          
Sbjct: 340 ---LW-------TAEGDGEKIIGYVAENEHEE-------ARFIAEEIDRLQDEA------ 376

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  D+ +  R    +  I  +         +           +   IKD +A  R
Sbjct: 377 ---DFRPGDVAIFYRTNAQSRSIEEIL----MRVGLPYRVVGGTRFYERKEIKDALAYLR 429

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-------NCGIS 479
            +++ EDD++   +L  P     +     +        + +    + A          ++
Sbjct: 430 VLVNPEDDVNLRRILNEPKRGIGDRAEGAVAALAERERSSFMAALRHAEDAPAIATRSLN 489

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                +K I +L  +A           +L      +   +    +    ++ L E +   
Sbjct: 490 AVNGFVKLIDDLTEVASTSGAATALEAVLEQTGYLETLRASSDPQDESRVENLAELVAVV 549

Query: 537 LRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNE------------VRIMTVHTAKGL 583
              E++    SL + +  +       +   +   +             V +MT+HTAKGL
Sbjct: 550 REYERDKPEGSLTDFLEGVALVADADQIPDAPGSDTEAAVAEARRLGVVTLMTLHTAKGL 609

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P VFL      +F                                             
Sbjct: 610 EFPAVFLTGMEHGIFPQ----------------------------------ARSATDAKE 635

Query: 644 QEEYNRLLYVGMTRASDQLIICKHS---NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
             E  RL YVG+TRA  +L + +          + +    + D V  +    +R    + 
Sbjct: 636 LAEERRLAYVGLTRARKRLYLTRAEVRSLWGQSQYNPASPFIDEVPANLIEWKREGMSRA 695

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             SI    +    +S  H             QL            P K     
Sbjct: 696 IPSIGSSGFGRDRYSGSHWGAGSAVGGRDAGQLPPSLATRSARVQPQKEIPQL 748


>gi|331685533|ref|ZP_08386117.1| DNA helicase II [Escherichia coli H299]
 gi|331077234|gb|EGI48448.1| DNA helicase II [Escherichia coli H299]
          Length = 720

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRVHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|89069676|ref|ZP_01157013.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516]
 gi|89044756|gb|EAR50862.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516]
          Length = 794

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 106/640 (16%), Positives = 197/640 (30%), Gaps = 121/640 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+   K+   +DF DL+++   + ++      +  +  +   +IL+DE QDT++ 
Sbjct: 196 ALYAQYQARLKELNAVDFGDLLLHVVTIFQQ---RPDVLEQYQRWFRYILVDEYQDTNVA 252

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 253 QYLWLRLLAG----------GHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 296

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V +  +   G +                       
Sbjct: 297 --GAEVVRLEQNYRSTGHILAAASGVIAANKGRLGKTLF--------------------- 333

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + ++     ++D   +       AR I   I  M G            +
Sbjct: 334 -------TDGEDGEKVRLIGHWDGEEE-------ARWIGEEIEAMQGG-----TRGMAPV 374

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + + I+D MA  R  +S 
Sbjct: 375 SLDDVAILVRASHQMRGFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRLAVSP 430

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHV 484
           +DDL+F  ++ +P     +  +  I    R    ++ E  +           G  + +++
Sbjct: 431 DDDLAFERIVNTPKRGLGDKAVQTIQRTARANGVSLVEGARLAVEAALLKGKGAKELRNL 490

Query: 485 IKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           ++ +        A+  +  +   +IL        + +    E    ++ L E +      
Sbjct: 491 VQSLDRWHAQVRAEADTHVELAEMILDESGYTGMWQADKTPEAPGRLENLKELVKALEGF 550

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +         L   LE     +      +  +V IMT+H AKGLE P VFL      +F 
Sbjct: 551 DN--------LQGFLEHVALIMDNETEEHGAKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 602

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 603 SQRS--------------------------------MDESGLKGLEEERRLAYVGITRAE 630

Query: 660 DQLIICKHSNTSN----EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
               I   +N       +     R   ++  D                            
Sbjct: 631 RLCTISFAANRRVYGQWQSALPSRFIDELPEDHVDVLTPPGLYGGGYGAAGMAGGLGVTG 690

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             +   T   R+         +++  +      +   E  
Sbjct: 691 GLNDAMTQRVRDADGYNSPGWKRLQSRSQQRGMSQPRESR 730


>gi|157158058|ref|YP_001465297.1| DNA-dependent helicase II [Escherichia coli E24377A]
 gi|157080088|gb|ABV19796.1| DNA helicase II [Escherichia coli E24377A]
          Length = 720

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRVHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|239943694|ref|ZP_04695631.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239990145|ref|ZP_04710809.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
 gi|291447158|ref|ZP_06586548.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998]
 gi|291350105|gb|EFE77009.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998]
          Length = 812

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 118/709 (16%), Positives = 222/709 (31%), Gaps = 134/709 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 126 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKKL-----GFTSSFSIYDAADSK 180

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +    K  +LK +L        +          F+ T   
Sbjct: 181 RLMALVCRDLDLDP-KRYPPKSFTAKVSNLKNEL------IDEETFAGQAADGFEKT--- 230

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+D+I+ T  LL+       +     +   H+L+DE Q
Sbjct: 231 ---LAQAYALYQARLREANALDFDDIIMTTVHLLQ---AFPDVAEHYRRRFRHVLVDEYQ 284

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ ++R L          + +P  L  VGD  QSIY+F GA  + +L+ +     
Sbjct: 285 DTNHAQYTLVRELVG----PAGENDAPAELCVVGDADQSIYAFRGATIRNILQFEEDYP- 339

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    + I L  ++RST  IL+  + V    E+ +  +                  
Sbjct: 340 -------SATTILLEQNYRSTQTILSAANAVIERNESRRPKN------------------ 374

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW        +  +  + +         +       A+ +A  I  +          
Sbjct: 375 ---LW-------TNAGSGARITGYVADTEHDE-------AQFVADEIDRLTDKG------ 411

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +A D+ V  R    + +   +         +           +   ++D++A  R
Sbjct: 412 ---DAKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERKEVRDVLAYLR 464

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ--- 482
            + + ED +    +L  P     +     I      E  +  + +++         +   
Sbjct: 465 VLANPEDTVPLRRILNVPKRGIGDRAEAMIDALSMREKISFPQALRRVDEAYGMAARSSN 524

Query: 483 ---HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                   + EL  I +  + P      +L       +  +    +    I+ L E    
Sbjct: 525 AVKRFNTLMEELRTIVESGAGPAVVLEAVLERTGYLAELQASTDPQDETRIENLQELAAV 584

Query: 536 TL-----RNEQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            L     R E+    +L E + +  L      I          + +MT+HTAKGLE PVV
Sbjct: 585 ALEFEQERGEEEGAGTLAEFLEKVALVADSDQIPDEDEDGSGVITLMTLHTAKGLEFPVV 644

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FL      VF H                                       +    EE  
Sbjct: 645 FLTGLEDGVFPHMRALG----------------------------------QTKELEEER 670

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           RL YVG+TRA ++L + + +  S   + +       + +        K+
Sbjct: 671 RLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPEAHLEWKR 719


>gi|77461864|ref|YP_351371.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf0-1]
 gi|77385867|gb|ABA77380.1| DNA helicase II [Pseudomonas fluorescens Pf0-1]
          Length = 727

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 116/641 (18%), Positives = 208/641 (32%), Gaps = 124/641 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        LS  F       Q+ ++ + I +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LSQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    L   + +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPQHIQASGDLFLATMRGIYEAYEAACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   HIL+DE QDT+ +Q+  +R L               +L  VGD+
Sbjct: 205 HPG---LLAHYQKRFRHILVDEFQDTNAVQYAWLRLL----------GKGGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                  I L  ++RSTA IL   + + +   
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFPDSV--------TIRLEQNYRSTAGILKAANALIANNT 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDGGDGEAINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           +   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------LARSDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGIGEKTVEAIRDHARH 434

Query: 462 ETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E + +                  I+ I  L         H     ++       
Sbjct: 435 SDVSMWEAMGQLVANKGLTGRAAGALGAFIELIENLAAKCAEMPLHLMTQTVIEQSGLIA 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570
             +      G   ++ L+E ++     E       L  L + L              + +
Sbjct: 495 YHEAEKGEKGQARVENLEELVSAARNFENTEEDEELTPLAAFLGHASLEAGDTQADEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                         EE  RL YVG+TRA   L++       
Sbjct: 593 ------------RLEEERRLAYVGITRAMQNLVMTYAETRR 621


>gi|330961415|gb|EGH61675.1| DNA-dependent helicase II [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 727

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 118/641 (18%), Positives = 212/641 (33%), Gaps = 124/641 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANALIVNNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEYDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L         H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              +  
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESDEELTPLAAFLGHASLEAGDTQAQEHEE 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                         EE  RL YVG+TRA  QL++       
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRR 621


>gi|225012823|ref|ZP_03703257.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
 gi|225003097|gb|EEG41073.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
          Length = 775

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/710 (15%), Positives = 229/710 (32%), Gaps = 130/710 (18%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFK-STLASLTLAKYLNAHYEEAKKKNCVLDFE 150
           K   ++ ++   ++  I ++  FN   + +  T++       +   Y     K   +DF+
Sbjct: 140 KYKQVRSRISAFKNSLITVKAYFNDLDLQESDTMSKRPQMGEIYKEYVARCFKAGAMDFD 199

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN+LL +      +  K      +IL+DE QDT+  Q+ ++R+L++         
Sbjct: 200 DLLLRTNELLNRYPE---VLAKYQDRFRYILVDEYQDTNHSQYLIVRALSD--------- 247

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              + +  VGD+ QSIY+F GA    +L  ++             ++  L  ++RST  I
Sbjct: 248 -RYQNICVVGDDAQSIYAFRGANINNILNFQKDYD--------GVALYRLEQNYRSTKTI 298

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + + S  +                           +W         Q         
Sbjct: 299 VNAANSIISHNKTKIDKV---------------------VWTSNTEGESIQ--------- 328

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                + + ++ +   R IA +I         F    +   +  D  +L R    +  + 
Sbjct: 329 -----VNRLATDAEEGRHIASSI---------FDFKMQEQRKNADFAILYRTNAQSRAME 374

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD++A  R +++ +D+ S   ++  P     +
Sbjct: 375 DALR----KRDIPYRIYGGLSFYQRKEIKDILAYLRILVNPKDEESLKRIINYPPRGIGQ 430

Query: 451 DDIFKICTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             + K+       +  +        E         + K       I       +  +  +
Sbjct: 431 TTVDKLVVASKHHDLPFFETIVKAKELQLPLNAGTLLKLSEFSTLIQRFQIENETLNAFE 490

Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS------SLQELISE 553
              L+       Q+       E    I+ ++E LN      +          SL E + +
Sbjct: 491 VTDLVTKKIGLVQELKKDATPEGIARIENIEELLNGIRDFTEGQEELADANGSLSEFLED 550

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +      + +    N + V +MT+H AKGLE P VF+V     +F               
Sbjct: 551 VAL-ATDLDKDDDPNSDRVALMTIHLAKGLEFPYVFIVGLEEDLFPSAMSLNT------- 602

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                      ++  EE  RL YV +TRA ++  +    +    
Sbjct: 603 ---------------------------RTELEEERRLFYVALTRAEERAFLSYTLSRYRW 635

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K         +       E +    L   + K+++           + P  + +     
Sbjct: 636 GKLIDAEPSRFI-------EEIDPQYLNKVVPKNDYSFKPLLNTSIFDEPTPQRQW-SNN 687

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
           + +    K + +P  + + +   + P+         + +   + +    G
Sbjct: 688 IKKTPKEKLITTPTSSQLKKLRKIEPTATIKSEDVIVLAEGMEVEHARFG 737


>gi|256420067|ref|YP_003120720.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
 gi|256034975|gb|ACU58519.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
          Length = 783

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/698 (14%), Positives = 202/698 (28%), Gaps = 133/698 (19%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           + +     +   A+  +   L   Y +   KN  +DF+DL+     LLK       + +K
Sbjct: 159 QHDYAVQQEDMRANRPMTGKLYDMYAKRCFKNGAMDFDDLLFKMYQLLKSFPE---VLHK 215

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
              +  +I+IDE QDT+  Q+E+I+ L           ++   +  VGD+ QSIYSF GA
Sbjct: 216 YQHKFKYIMIDEYQDTNPAQYEIIKLL----------GAAHENICVVGDDAQSIYSFRGA 265

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             + +L+ ++              +++L  ++RST  IL V ++V +  +     +    
Sbjct: 266 TIQNILQFEKDYD--------DAKVVKLEQNYRSTKSILNVANEVIANNKGQIEKN---- 313

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW           + ++           +        + +A T
Sbjct: 314 -----------------LW-------TDNADGEKIKLVRTMTDNEEG-------KFVADT 342

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I+             +     +D  +L R    +       R       I          
Sbjct: 343 IAE---------QKLRNHYANRDFAILYRTNAQSRAFEENLR----RKAIPYRIFGGLSF 389

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY---- 467
                IKD +A  R + + +++ S   ++  P+    +  + K       +  T +    
Sbjct: 390 YQRKEIKDFIAYLRIVTNPQEEESLKRIINYPVRGIGKTTVDKCSVIANDQNITFWNVLE 449

Query: 468 -EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-- 524
                 F +  +   +  +  I     +    + +D    +  +    ++  +    E  
Sbjct: 450 RAREFGFKSGTLEAIEGFVIMIRSFQAMLGKHNAYDIALQVGKSTNLVKELFNDKTTEGL 509

Query: 525 -VIDVLDEFLNFTLRNEQNSYSSLQ------ELISELEQYPPTIKRA--HSANHNEVRIM 575
              + + E LN      +      +       L S L+Q          +  + + V++M
Sbjct: 510 ARYENIQELLNSIKEFTETPTEDGELLEAEKSLGSYLQQITLLTDADKGNDEDSDVVKLM 569

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE PVVF V     +F                                     
Sbjct: 570 TIHAAKGLEFPVVFSVGLEENLFPSGLSINSREELEEERRL------------------- 610

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                           YV +TRA  +L +   ++     +         + +        
Sbjct: 611 ---------------FYVVITRAKSRLFLTYANSRYRFGQLVNNESSRFLEEMPEKYIDR 655

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                              +                ++  +     +  +  +       
Sbjct: 656 SY------AGGSGVNRSPINNGGGLWGNSGGGNMFDRMQKKTPQSSQQPAGPRPAPKPMQ 709

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN-------RGLII 786
              PST         +   +              G I 
Sbjct: 710 TAMPSTHVPSPNFTPDDPATMEAGMEVEHQKFGFGTIT 747


>gi|305667011|ref|YP_003863298.1| putative helicase [Maribacter sp. HTCC2170]
 gi|88709246|gb|EAR01480.1| putative helicase [Maribacter sp. HTCC2170]
          Length = 787

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/595 (16%), Positives = 199/595 (33%), Gaps = 119/595 (20%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150
           K   ++ ++   ++  I ++      ++ ++   +       +  HY +   K   +DF+
Sbjct: 147 KYKQVQNRISSYKNSLITVKAYMQNPELVEADAMAKRPRLGEIYQHYVDRCFKAGAMDFD 206

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN+LL +      +  K      +IL+DE QDT+  Q+ ++++L +         
Sbjct: 207 DLLLRTNELLNRHPE---VLMKYQDRFRYILVDEYQDTNHSQYLIVKALAD--------- 254

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  VGD+ QSIYSF GA    +L  +R  +           +  L  ++RST +I
Sbjct: 255 -RYHNICVVGDDAQSIYSFRGANISNILNFQRDYEN--------VGMYRLEQNYRSTKNI 305

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + + +  +N                          +W       ++   P  +   
Sbjct: 306 VNAANSIIAKNKNQLEKV---------------------VW------TENDDGPAIKVHR 338

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           S  D+           R +A          +IF N  +  +   +  +L R    +  + 
Sbjct: 339 SITDAEEG--------RFVA---------GSIFENKMQNQLLNGEFAILYRTNSQSRAME 381

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD+++  R +++ +D+ +   ++  P     +
Sbjct: 382 DALR----KRDIPYRIYGGLSFYQRKEIKDVLSYLRLVINTKDEEALKRVINFPARGIGQ 437

Query: 451 DDIFKICTQRHET--------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             + K+    +          E +     K  +    K +  +  I     + +      
Sbjct: 438 TTVDKLVVAANHYGRSIFEVIENLDRINLKINSGTKRKLEDFVTMIKSFQIMGESNDAFT 497

Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSSLQELISELEQ 556
               +        +F      E    ++ ++E LN        ++    +   +   LE 
Sbjct: 498 LAEHVAKKSGILLEFKKDGTPEGIGRMENVEELLNGIKDFVEGQKELADATGNISEFLED 557

Query: 557 YPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
               T       + + V +MT+H AKGLE P V++V     +F                 
Sbjct: 558 VALATDMDKDMGDDDRVALMTIHLAKGLEFPYVYIVGMEEDLFPS--------------- 602

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                               +    +S  EE  RL YV +TRA  Q  +    N 
Sbjct: 603 -------------------AMSMNTRSELEEERRLFYVALTRAEKQAYLTYTQNR 638


>gi|225023801|ref|ZP_03712993.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC
           23834]
 gi|224943456|gb|EEG24665.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC
           23834]
          Length = 720

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 116/764 (15%), Positives = 237/764 (31%), Gaps = 147/764 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L   Q S  +             +  + + +   +        
Sbjct: 21  GAGSGKTKVLTTRIAWLLHSGQASLHSVMAVTFTNKAAKEMRARLEAMLPLNIRAMWLGT 80

Query: 66  FSLLSSFFL----TQKFTPQKN---------IITQEINKKSPDLKEKL--KKSQDEFIKI 110
           F  L   FL     +   P             + + + K     +E +  +  Q      
Sbjct: 81  FHGLCHRFLRLHHKEAGLPAAFQILDSSDQLALVKRLLKALNISEEIIAPRALQGFINAQ 140

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           ++      +  ++           A Y+   ++  V DF +L++ + ++L+  ++   +R
Sbjct: 141 KEAGLRAAVLHASNPFEQRLIECYAEYDRLCRQEGVADFAELMLRSYEVLQSNEI---LR 197

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                  NHIL+DE QDT+ +Q++ ++ L                +FAVGD+ QSIY F 
Sbjct: 198 THYQNRFNHILVDEFQDTNKLQYDWLKLLAGQ----------HAAVFAVGDDDQSIYRFR 247

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +    R  Q  +         I+L  ++RS  +IL   + V +  +   G +  
Sbjct: 248 GARVGNMADFMREFQVASP--------IKLEQNYRSVGNILAAANAVIAHNDGRLGKNL- 298

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                                     + +++   +    +++ D           A  + 
Sbjct: 299 --------------------------RTEAEHGEKIRFLSAFTDGEE--------AEFVV 324

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +       +             VL R    + ++            +        
Sbjct: 325 EEIKALHRDGMDLAQT----------AVLYRSNAQSRVLEQTL----FRAGLPYKIYGGL 370

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEY 469
              +   IK  +A  R  ++ +DD + + ++  P        +  I      E   +++ 
Sbjct: 371 RFYERQEIKHALAYLRLAINPDDDNALLRVINVPARGIGSRTVENIQAAASQEGIPLWQA 430

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVID 527
               A     K    ++ I  L          D     + +    + + ++ G   + +D
Sbjct: 431 ACHVAVKN-GKVATFVRLIESLRGCIGQVGLPDIVAEAVRSSGLYEYYQNQKGDHQDRLD 489

Query: 528 VLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHSANHNEVRIM 575
            LDE +        E +++ +L           +++ L        +   +A+ + V++M
Sbjct: 490 NLDELIRAAEEFHPEDSTFETLPADVVESPAFPVLAFLSNAALESGENQAAADESAVQLM 549

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH AKGLE   VFL       F  +                                  
Sbjct: 550 TVHAAKGLEFDAVFLTGMEEGRFPSE---------------------------------- 575

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +   +    EE  RL+YV +TRA  +L I          +++  T    V          
Sbjct: 576 LSLAEHGGLEEERRLMYVAITRARQRLYISMAQQRMLHGQTHFGTVSRFVE--------- 626

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
              ++   +        +     PE  P +R       + +Q  
Sbjct: 627 ---EIPPDLLHLLTPVLKPRFPVPEGRPQQRRAEWVAPVAKQDY 667


>gi|221068754|ref|ZP_03544859.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
 gi|220713777|gb|EED69145.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
          Length = 827

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/597 (17%), Positives = 190/597 (31%), Gaps = 153/597 (25%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YEE  ++  V+DF +L++ + +LL+       +R+   +   HIL+DE QDT+ +
Sbjct: 191 ELYQLYEEQCQREGVVDFGELMLRSYELLRDD---VHLRHHYQRRFQHILVDEFQDTNKL 247

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q++ ++ L  D       + S  ++ AVGD+ QSIY+F GA    +    R    +    
Sbjct: 248 QYQWLKQLAGDDV--GGRYESAASVIAVGDDDQSIYAFRGARVGNMADFIREFDVK---- 301

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I+L  ++RS ++IL   + + S   N  G +                       
Sbjct: 302 ----NQIKLEQNYRSYSNILDCANALISHNSNRLGKNL---------------------- 335

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +           + +  D           A  +   I  ++  D           
Sbjct: 336 -----RTSQGPGEPVRIYEAPSDLAE--------AAWMVDEIKQLVKND---------GF 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             ++I VL R    + +I         + +I           +   IK  +A  R + + 
Sbjct: 374 TRQEIAVLYRSNAQSRVIESAL----FNSRIPYRVYGGLRFFERAEIKHALAYLRLLENP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD SF+ ++  P        I  +  T R    ++ + +        +K Q  +  I  
Sbjct: 430 HDDTSFLRVVNFPARGIGARTIEVLQDTARSSGTSLSDAVTAVGGAAGTKLQGFVAQIDV 489

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539
           L    Q  +  +    +       + + +   G + I+ L E +                
Sbjct: 490 LREQTQGRTLREIIETVEEQSGLIEHYRNEKEGADRIENLQELVTAAESFVTQEGFGRDA 549

Query: 540 ------EQNSYSSLQE---------------------------------------LISEL 554
                 EQ +   L +                                       L + L
Sbjct: 550 VAMPLDEQQNAPQLSQSPVSQGLDPNQPLLDEALRAPAGTAASMVNADTGETLSPLQAFL 609

Query: 555 EQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                        A  + V++MTVH +KGLE   VF+      +F H++           
Sbjct: 610 VHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDAVFIGGVEEGLFPHEN----------- 658

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                    + +   EE  RL YV +TRA  +L +      
Sbjct: 659 -----------------------AMMDRGGLEEERRLAYVAITRARKRLYLSHSQTR 692


>gi|296392306|ref|ZP_06881781.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAb1]
          Length = 728

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/591 (17%), Positives = 192/591 (32%), Gaps = 116/591 (19%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +       L     +   YE A  +  V+DF +L++   DL +       +  
Sbjct: 154 EGLRPQHIQPGGDLFLATMLKIYEAYEAACARAGVIDFSELLLRALDLWRDHPG---VLE 210

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +   HIL+DE QDT+ +Q+  +R L +             +L  VGD+ QSIY + G
Sbjct: 211 HYQRRFRHILVDEFQDTNAVQYAWLRILAK----------GGDSLMVVGDDDQSIYGWRG 260

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + + +                 +I L  ++RSTA IL   + + +  +   G     
Sbjct: 261 ARIENIQQFSDDF--------ADAEVIRLEQNYRSTASILKAANALIANNQGRLGK---- 308

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            +LW           + +  S  + F+   +       AR +  
Sbjct: 309 -----------------ELW-------TDGEDGESLSLYAAFNEHDE-------ARYVVE 337

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           +I + +             +   +I +L R    + ++       K    I         
Sbjct: 338 SIESALRGG----------LARSEIAILYRSNAQSRVLEEALLREK----IPYRIYGGQR 383

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470
             +   IK+ MA  R +  + +D +   ++  P     E  +  I    R    +++E I
Sbjct: 384 FFERAEIKNAMAYLRLLDGRGNDAALERVVNVPARGIGEKTVESIREFARGNDVSMWEAI 443

Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521
           +             S     ++ I  L         H     ++         ++     
Sbjct: 444 RLMIANKVLPGRAASALTGFVELIENLSAKVMDMPLHLMTQTVIEQSGLISYHKEEKGEK 503

Query: 522 GNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
           G   ++ L+E ++     E +     L  L + L        +    A+ + V++MT+H+
Sbjct: 504 GQARVENLEELVSAARAFENSEEEEDLTPLQAFLSHASLEAGETQADAHEDSVQLMTLHS 563

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VFLV     +F HK                                      
Sbjct: 564 AKGLEFPLVFLVGMEEGLFPHKMSL----------------------------------E 589

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           +    EE  RL YVG+TRA  +L++                    + +   
Sbjct: 590 ESGRLEEERRLAYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFIREIPP 640


>gi|300766625|ref|ZP_07076542.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495725|gb|EFK30876.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 759

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/752 (13%), Positives = 220/752 (29%), Gaps = 140/752 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L   S  +     
Sbjct: 34  GAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLLGESAQEVWVST 93

Query: 66  FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-------------EFIKI 110
           F  L    L +           T     +   L +++   Q+                  
Sbjct: 94  FHALCVRILRRDIEQIGYNRAFTIAGTSEQRTLVKRILTEQNIDSKKFDPRSILSAISNA 153

Query: 111 RDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +M+K + A    ++   +   Y+     +  +DF+DLI+ T  L K+   +  
Sbjct: 154 KNDLQTPEMYKESAASPFESVVADVYLQYQRELAADQAVDFDDLIMLTIQLFKQNPET-- 211

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L + +          + L  VGD  QSIY 
Sbjct: 212 -LAWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKY----------KNLCVVGDADQSIYG 260

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++   +           + L  ++RST  IL+  + V +     +   
Sbjct: 261 WRGANMENILDFEKDYPQ--------ADTVMLEQNYRSTKTILSAANAVINNNSTRRPKK 312

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       +++   +   +    +S             
Sbjct: 313 ---------------------LW------TENEPGDKISYYRGQSESDETH--------F 337

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +  D +            D  +L R    + ++            I      
Sbjct: 338 VIAKIQESMQQDKM---------DYGDFAILYRTNAQSRVMEESL----VKANIPYTMVG 384

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I+D+++     ++ +D ++F  ++  P     +  + K+         ++ 
Sbjct: 385 GNKFYDRKEIRDVLSYLTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSML 444

Query: 468 EYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           E                         ++EL  + ++ S  D    IL      +      
Sbjct: 445 EAASNVDMANGISARAKGALAKFAATMNELRAMREYLSVTDLTQEILDRTGYMKALKDAK 504

Query: 522 ------GNEVIDVLDEFLNFTLRNEQN---SYSSLQELISELEQYPPTIKRA-HSANHNE 571
                     I+ ++EFL+ T + + +         + +  L                  
Sbjct: 505 ATKSLEAQARIENIEEFLSVTKQFDDSYQPEDEDSDKFVDFLADLALVSDVDNVEEEPQA 564

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F                                 
Sbjct: 565 VTLMTLHAAKGLEFPVVFLIGMEEGIFPLSRAMMDEDELEEERRL--------------- 609

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688
                               YVG+TRA  +L +    +       + +    + + +   
Sbjct: 610 -------------------AYVGITRAEKKLYLTNAYSRMLYGRRQNNPASRFVEEIEPE 650

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
              +E       +           E     P 
Sbjct: 651 LLKNENTLDGASSTGPKVPFGADRERRAFTPS 682


>gi|170728818|ref|YP_001762844.1| DNA-dependent helicase II [Shewanella woodyi ATCC 51908]
 gi|169814165|gb|ACA88749.1| DNA helicase II [Shewanella woodyi ATCC 51908]
          Length = 721

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/604 (16%), Positives = 196/604 (32%), Gaps = 120/604 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+E+  +  ++DF ++++  ++L   +     +         +IL+DE QDT+ I
Sbjct: 172 QIYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---VLKHYQDRFKNILVDEFQDTNAI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + +      K     
Sbjct: 229 QYAWIRVLAGD----------NANVMIVGDDDQSIYGWRGAQVENLHKFLEDFPKAG--- 275

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ +      G                       LW
Sbjct: 276 -----TIRLEQNYRSTGHILKASNELIANNPERLGKK---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +Q +    F+ + +       AR I   I +                
Sbjct: 310 -------TEDKDGEQIAIYCAFNEMDE-------ARFIVGRICDWHDMGGDL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    + ++            ++          +   IKD M+  R I ++
Sbjct: 348 --SSCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMSYLRLINNK 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
           +DD +F  ++ +P        +  +    R +  T+++   +       +    +  +  
Sbjct: 402 DDDAAFERVVNTPARGIGGRTLDILRATARQQELTLWQTCLRALEEKLLSGRAANAVRGF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-- 539
           +  I E+    +  S H     ++     +  + +  G +     + LDE +        
Sbjct: 462 MDLIVEMQQDTEELSLHRTTDHVIRESGLKSMYEAEKGEKARSRVENLDELVTAARTFVM 521

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E      L   +S              A  + V++MT+H+AKGLE PVVF+      +
Sbjct: 522 PEENEDMGELNAFLSHAALEAGE--GQADAFTDAVQLMTLHSAKGLEFPVVFMSGVEEGI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F  +                                           +E  RL YVGMTR
Sbjct: 580 FPSQMAMDEG----------------------------------DRLDEERRLCYVGMTR 605

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A ++L I          + N       + +         ++K   S       ++  ST 
Sbjct: 606 AMEKLYITYAETRRIYGRENFARPSRFIKEIPTEHVEEIRLKTQVSTPSRAQPSFTRSTV 665

Query: 718 HPEN 721
             E+
Sbjct: 666 VNES 669


>gi|16762183|ref|NP_457800.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143672|ref|NP_807014.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213161539|ref|ZP_03347249.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213425413|ref|ZP_03358163.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213649574|ref|ZP_03379627.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213865062|ref|ZP_03387181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25290775|pir||AG0918 DNA helicase II [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504486|emb|CAD07941.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139307|gb|AAO70874.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 720

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 188/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+V + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSVANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGW----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|312795642|ref|YP_004028564.1| DNA helicase II [Burkholderia rhizoxinica HKI 454]
 gi|312167417|emb|CBW74420.1| DNA helicase II (EC 3.6.1.-) [Burkholderia rhizoxinica HKI 454]
          Length = 791

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 124/846 (14%), Positives = 242/846 (28%), Gaps = 176/846 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W +   + S                +L +   +   +        
Sbjct: 28  GAGSGKTRVLITRIAWLISRGEASPAGILAVTFTNKAAREMLIRLDAMLPINTRGMWIGT 87

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F  L +  L             + + T +       L + L         K  Q      
Sbjct: 88  FHGLCNRMLRAHYRDAGLPQAFQILDTADQLSAIKRLMKGLNIDDEKYPPKSLQYFINNA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++    +   ++         L A YE+  ++  V+DF +L++  ++LL++      +R
Sbjct: 148 KEQGLRPEQVDASDNFNRKCVELYAAYEQQCQREGVVDFAELLLRCHELLQRNPT---LR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F 
Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +L  +R    R         +I+L  ++RS  +IL   + + +      G +  
Sbjct: 255 GANVGNMLDFEREFNVR--------HLIKLEQNYRSHGNILDAANALIAHNSKRLGKNLR 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + ++ S  A  I 
Sbjct: 307 TD---------AGHGEPVRVY--------------------------EATTDSQEAGWIV 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +I T           +   +I VL R    + ++         +  I+       
Sbjct: 332 EEIRALIDTG----------LSRDEIAVLYRSNAQSRVVEHTL----VNAGIAYRVYGGL 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        + ++    R    ++ + 
Sbjct: 378 RFFERQEVKHALAYLRLIDNPSDDTAFARVVNFPARGIGARSLEQLADAARLYNCSMAQA 437

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
           I              +  I  +    +  S  +    ++      Q + + R G E I+ 
Sbjct: 438 IPYVTGKAGQALGGFLALIERMRGETRAMSLPETVEAVIRLSGLEQFYANDREGQERIEN 497

Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549
           L E +N            L                                         
Sbjct: 498 LQELVNAASAFVSEEGYGLDTPARSIPLAPGASRAAALRGPDDDGEQAVLDAPRIDAPAQ 557

Query: 550 -------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                  L   L             A  + V++MTVH AKGLE   VF+      +F H+
Sbjct: 558 NPDQMTPLAGFLSHASLEAGDNQAQAGEHAVQLMTVHAAKGLEFAAVFITGLEEGLFPHE 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                     ++   EE  RL+YV +TRA ++
Sbjct: 618 NSVT----------------------------------EQDGLEEERRLMYVAITRAKER 643

Query: 662 LIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           L +           +  +   +        ++       E   +         +     +
Sbjct: 644 LYLSFAQSRMLHGQTRYNVRSRFFDELPAGVLKWLTPKLEPGSRWGQRAGFGDNAGWGRD 703

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
           W                                 ++       +  +       T LE  
Sbjct: 704 WFGRGGRRDDAPYGNARFDDGAPAPAFADQQRAAQSGFRIGQPVFHAKFGEGTITALEGG 763

Query: 774 LSDNQT 779
            +D + 
Sbjct: 764 GTDAKA 769


>gi|229586731|ref|YP_002845232.1| DNA helicase II [Rickettsia africae ESF-5]
 gi|228021781|gb|ACP53489.1| DNA helicase II [Rickettsia africae ESF-5]
          Length = 653

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/567 (19%), Positives = 192/567 (33%), Gaps = 121/567 (21%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +  + L    +AK +   Y++    + VLDF DL++  N+L  K    + I     ++
Sbjct: 159 LSVSDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN---SEILRYYQEK 215

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +ILIDE QDT+++Q+   R L   +          + +  VGD+ QSIY + GAE   
Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +LR ++             +II+L  ++RST  IL     V +  +N  G +        
Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW     + + +       W+   +           AR IA  I N+
Sbjct: 310 -------------LW---TDRENGEKIKIISCWSDKEE-----------ARYIASEIDNL 342

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +               A +I +LVR    T            +  +           + +
Sbjct: 343 VRE---------NRYNAGNIAILVRAVFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475
            I+D++A  R  L+Q D+L+   ++  P        + KI         + +  I++   
Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRGYALERNISNFAAIKEMLE 449

Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
            G  K       + ++  I          +P +    IL      +        E    I
Sbjct: 450 IGEIKAKSYETLKDLVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584
           + ++E L               ++   +E     ++           V IMT+H AKGLE
Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVFL      VF  +                                       +   
Sbjct: 562 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGEKGL 589

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671
           EE  R+ YVG+TRA   L I    +  
Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616


>gi|257485680|ref|ZP_05639721.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011968|gb|EGH92024.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 727

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 120/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI N + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIENALQTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L         H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|238650278|ref|YP_002916130.1| DNA helicase II [Rickettsia peacockii str. Rustic]
 gi|238624376|gb|ACR47082.1| DNA helicase II [Rickettsia peacockii str. Rustic]
          Length = 653

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 111/567 (19%), Positives = 190/567 (33%), Gaps = 121/567 (21%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +  + L    +AK +   Y++    + VLDF DL++  N+L  K    + I     ++
Sbjct: 159 LSVSDTNLPLQRIAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN---SEILRYYQEK 215

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +ILIDE QDT+++Q+   R L   +          + +  VGD+ QSIY + GAE   
Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +LR ++             +II+L  ++RST  IL     V +  +N  G +        
Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW     + + +       W+   +           AR IA  I  +
Sbjct: 310 -------------LW---TDRENGEKIKIISCWSDKEE-----------ARYIAGEIDKL 342

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +               A +I +LVR    T            +  +           + +
Sbjct: 343 VRE---------NRYNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475
            I+D++A  R  L+Q D+L+   ++  P        + KI         + +  I++   
Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRGYALERNISNFAAIKEMLE 449

Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
               K       + ++  I          +P +    IL      +        E    I
Sbjct: 450 IDEIKAKSYETLKDLVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584
           + ++E L               ++   +E     ++           V IMT+H AKGLE
Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVFL      VF  +                                       +   
Sbjct: 562 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGEKGL 589

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671
           EE  R+ YVG+TRA   L I    +  
Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616


>gi|91205500|ref|YP_537855.1| DNA helicase II [Rickettsia bellii RML369-C]
 gi|122425652|sp|Q1RIP8|UVRD_RICBR RecName: Full=Probable DNA helicase II homolog
 gi|91069044|gb|ABE04766.1| DNA helicase II [Rickettsia bellii RML369-C]
          Length = 653

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/561 (20%), Positives = 192/561 (34%), Gaps = 121/561 (21%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            L    +AK +   Y++    + V+DF DL++  N+L  K      I     +   +ILI
Sbjct: 165 NLPLQRVAKLVYEEYQQNLLISNVVDFGDLLLYNNELFIKNPD---ILKHYQERYRYILI 221

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+++Q+   R L           S  + +  VGD+ QSIY + GAE   +LR ++
Sbjct: 222 DEYQDTNVVQYLWARMLA----------SLSKNICCVGDDDQSIYGWRGAEVGNILRFEK 271

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                        +II+L  ++RST  IL     V +  +N  G +              
Sbjct: 272 DF--------LNATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------------- 309

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  LW       D +   + +  + + D           AR IA  I+ ++     
Sbjct: 310 -------LW------TDKESGEKIKIISCWNDKEE--------ARYIAAEIARLVREGR- 347

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                     A +I +LVR    T            +  +           + + I+D++
Sbjct: 348 --------YSAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERMEIRDVL 395

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK- 480
           A  R  L+Q D+L+   ++  P        + KI      +  + +  I++    G  K 
Sbjct: 396 AYIRIALNQNDNLALERIINVPKRAIGAVTLNKIKLYAIEKNISNFAAIKEMLEDGEIKT 455

Query: 481 -----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
                 + ++  I        F +P +    IL      +        E    I+ ++E 
Sbjct: 456 KSYETLKDLVTKISNWHERFSFDAPINVTKAILDDSGYLEMLQEEKTEEALGRIENINEM 515

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLESPVVFL 590
           L               ++   +E     ++           V IMT+H AKGLE  VVFL
Sbjct: 516 LRAIAEF--------NDIHDFIEHSSLVMENESLETSYGGSVTIMTLHGAKGLEFDVVFL 567

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 VF  +          L ++                                 R+
Sbjct: 568 PGWEEGVFPSQRSLDEEGEKGLEEE--------------------------------RRI 595

Query: 651 LYVGMTRASDQLIICKHSNTS 671
            YVG+TRA  +L I    +  
Sbjct: 596 AYVGITRAKKELYITHAESRK 616


>gi|328754850|gb|EGF68466.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1]
          Length = 1072

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 147/1002 (14%), Positives = 296/1002 (29%), Gaps = 148/1002 (14%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-----ERFSLLSSF 72
               + L    V  ++K    +   G   I +    L  A  +            +     
Sbjct: 136  ARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDASPGKVRRADARWRQM 195

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
             L           T+    +  D+ + L +  +    +                      
Sbjct: 196  LL--------AAPTKRGGDRYADIDKWLSRVDEREELL---------------------D 226

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            L A Y+  KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q
Sbjct: 227  LVAAYQNLKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQ 283

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +V+ +L   F    + H     + AVGD  Q+IY + GA    +L   R    +    G
Sbjct: 284  ADVLAAL---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EG 337

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                ++ L  + R    I+   +               ++  +R   S   + G     +
Sbjct: 338  TPAQVLSLATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPAD 383

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                    Q     E       ++          +  A  +       TI         +
Sbjct: 384  DRAEVAVGQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------AR 435

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              D  +LVR+  D   +            + V   +   L     I  ++A  R ++ ++
Sbjct: 436  WSDAAILVRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQ 491

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANC 476
            DD +   +L +P    S DD+  +  +                      + + + +    
Sbjct: 492  DDAAMATLLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPG 551

Query: 477  GISKFQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
            G  + Q  +K +   I      +  SP D    I           +   +      D LD
Sbjct: 552  GHERLQCALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLD 611

Query: 531  EFLNFTLRNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESP 586
               N      ++    ++  +++ L         + RA + + + V + TVH AKGLE P
Sbjct: 612  ALWNAIREARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWP 671

Query: 587  VVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            +V + D    VF              ++PS        I  P S S  +  + +    + 
Sbjct: 672  LVIIPDMAQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKED 731

Query: 642  STQEEYNRLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            S   E  RL YV +TRA ++L++  H      +       + D++ D           + 
Sbjct: 732  SQWAEA-RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERP 790

Query: 701  TNSINKD-------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             + I                        +         +    + +  +K       +  
Sbjct: 791  DDDIQAGTPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQD 850

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIF 794
            ++  P +   ++   L+ +    +           ++    G   H+         + I 
Sbjct: 851  EVALPPRLTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIP 910

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                 +         T+ A        +   L S+ +  E      A      + ++V  
Sbjct: 911  LFDAEEIAELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEK 964

Query: 854  KINCPKKDIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
                     ++ GR+D +     +     + ++KT      +          QLSIY   
Sbjct: 965  SFVMTIGQTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLA 1016

Query: 911  LKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
               +       +  +  +V   +             A I T 
Sbjct: 1017 WAQARGIDPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|320321765|gb|EFW77863.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331515|gb|EFW87455.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 727

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 120/661 (18%), Positives = 216/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L   A     H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKAMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|313667543|ref|YP_004047827.1| DNA helicase II [Neisseria lactamica ST-640]
 gi|313005005|emb|CBN86435.1| DNA helicase II [Neisseria lactamica 020-06]
          Length = 735

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/582 (16%), Positives = 188/582 (32%), Gaps = 118/582 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q      ++      +  +            A Y++   +  V+DF +L++ + ++L
Sbjct: 144 RSLQGFINAQKESGLRASVLSAPDPHTRRMIECYAEYDKICHREGVVDFAELMLRSYEML 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  ++   +R       NHIL+DE QDT+ +Q+  ++ +                +FAVG
Sbjct: 204 QSNEI---LRRHYQNRFNHILVDEFQDTNKLQYAWLKLMAGGNAA----------VFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F GA    +          A         ++L  ++RS  +IL   + V   
Sbjct: 251 DDDQSIYRFRGANVGNMTALMEEFHIDAP--------VKLEQNYRSVGNILAAANAVIEN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                            + D++   +   ++++ D      
Sbjct: 303 NDERLGKNL---------------------------RTDAEAGDKIRYYSAFTDLEE--- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A+ I      +                  +I VL R    + +I           
Sbjct: 333 -----AQFIVDETKALEREGRDLD----------EIAVLYRSNAQSRVIEQSL----FRS 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IK  +A  R  ++ +DD + + ++  P        +  + T  
Sbjct: 374 GIPYKIYGGLRFYERQEIKHALAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTAS 433

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            E           A    +K    ++ I    +        +    IL      + + ++
Sbjct: 434 QEQGVSLWQAACNAGAKAAKVAAFVRLIEAFRNQVGQMPLPEIIVGILKDSGLTEYYKTQ 493

Query: 521 FG--NEVIDVLDEFLNFTLRN--EQNSYSSLQE---------LISELEQYPPTI-KRAHS 566
            G   + +D LDE +N  +    E +++  L +         +++ L        +    
Sbjct: 494 KGDNQDRLDNLDELVNAAIEFKPEDSNFEILPDNISDDPAFPILAFLSNAALESGENQAG 553

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A    V++MTVH AKGLE   VFL       F  +                         
Sbjct: 554 AGEKAVQLMTVHAAKGLEFNAVFLTGMEEGRFPSEMSL---------------------- 591

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                        ++   EE  RL+YV +TRA  +L I    
Sbjct: 592 ------------AERGGLEEERRLMYVAITRARKRLYITMAQ 621


>gi|296158133|ref|ZP_06840965.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295891469|gb|EFG71255.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 783

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 122/809 (15%), Positives = 230/809 (28%), Gaps = 171/809 (21%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W + +   S                ++ +   L            
Sbjct: 28  GAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAAREMMSRLSALLPIDTRGMWIGT 87

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F  L +  L             + + T +       L + L         K  Q      
Sbjct: 88  FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++    K   +T         L   Y++  ++  V+DF +L++   +LL        +R
Sbjct: 148 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L               ++FAVGD+ QSIY+F 
Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKMLAGQ----------TNSIFAVGDDDQSIYAFR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +   +     R         +I+L  ++RS   IL   +++ +      G +  
Sbjct: 255 GANVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + ++ S  A  I 
Sbjct: 307 TD---------AGHGEPVRVY--------------------------ESATDSQEAGWIV 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +I T T             +I +L R    +  I         +  I+       
Sbjct: 332 EEIKALISTGT----------SRSEIAILYRSNAQSRTIEHTL----VNAGIAYRVYGGL 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   
Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYNCSMAAA 437

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
           I   A    S        I ++    Q  S  +    ++ A    + + + R G + ++ 
Sbjct: 438 IPYVAGKAGSSLAGFANLIGKMRAETQQMSLPETVEYVVRASGLSEFYQNEREGQDRLEN 497

Query: 529 LDEFLNFTLRNEQNS--------------------------------------------- 543
           L E +N                                                      
Sbjct: 498 LQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATDDPNTVVLDAPGIADPAQ 557

Query: 544 -YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              ++  L   L             A    V++MTVH AKGLE   VF+      +F H+
Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                    ++    EE  RL+YV +TRA ++
Sbjct: 618 NS----------------------------------AMESDGLEEERRLMYVAITRAKER 643

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +    +     ++                +   K           W     +  +  +
Sbjct: 644 LYLSFAQSRMLHGQTRYNIRS---RFFDELPQETLKWLTPKIEPGARWGGRSDNAGYGRD 700

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKND 750
                  T         +P         +
Sbjct: 701 WFARPGYTGAASSTPAPLPAFANEQRAAE 729


>gi|84497950|ref|ZP_00996747.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649]
 gi|84381450|gb|EAP97333.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649]
          Length = 838

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/614 (16%), Positives = 192/614 (31%), Gaps = 113/614 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y+   ++   LDF+D+I+ T  +L+       +     +   HI++DE QD
Sbjct: 254 RLLAEAYTAYQRRLRQANALDFDDIIMLTVHMLQ---AFPDVAEHYRRRFRHIMVDEYQD 310

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++IR L             P  L  VGD  QSIY+F GA  + ++  +    + 
Sbjct: 311 TNHAQYQLIRELVGSDEKRGEHSVEPSELVVVGDADQSIYAFRGATIRNIVEFEVDYPE- 369

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  ILT  + V +  E+ +  +                   
Sbjct: 370 -------ARTILLERNYRSTQTILTAANAVIARNESRRKKN------------------- 403

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           +          +   +       A  +A TI  +         G 
Sbjct: 404 --LW-------TDSGSGAPIIGYVGDNEHDE-------ASFVARTIDKL---------GD 438

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +  ++  D+ V  R    +  +  +         +           +   +KD +A  R 
Sbjct: 439 EHGVKPGDVAVFYRTNAQSRALEEVF----VRVGLPYKVVGGTRFYERREVKDALAYLRV 494

Query: 428 ILSQEDDLSFVCMLKSPLFNFSED-DIFKICTQRHETETVYEYIQK------FANCGISK 480
           + +  D ++   +L  P     +  +         E  +  E + +       A   I+ 
Sbjct: 495 LSNPADTVNLRRILNVPKRGIGDRAEAVVAALAERERISFVEALGRPEDAPGIATRSIAC 554

Query: 481 FQHVIKYIHELIHIAQFCS--PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
            +     + +L  +    +    D    I+       +  +    +    ++ L E +  
Sbjct: 555 IKGFTALLEDLGTVRDDDNAGVADLLEAIVDKSGYLAELRASHDPQDETRVENLAELVAV 614

Query: 536 TLRN-----EQNSYSSLQELISELEQYPPTIKRAH---SANHNEVRIMTVHTAKGLESPV 587
                    E    +SL++ + ++       +      +     V +MT+HTAKGLE PV
Sbjct: 615 AREFDEARAETGEVNSLEDFLEQVSLVADADEIPDSAEAEEQGVVTLMTLHTAKGLEFPV 674

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFL       F H                                  L         EE 
Sbjct: 675 VFLTGMEDGTFPH----------------------------------LRSLADPKELEEE 700

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YVG+TRA ++L + + +  S             + +        ++     +    
Sbjct: 701 RRLAYVGITRARERLHLSRAAVRSAWGAPQYNPPSRFLDEIPTELLSWERELSGLAAIGQ 760

Query: 708 EWIAYEWSTHHPEN 721
                  ++     
Sbjct: 761 RGQRPAVASLAARP 774


>gi|186476348|ref|YP_001857818.1| UvrD/REP helicase [Burkholderia phymatum STM815]
 gi|184192807|gb|ACC70772.1| UvrD/REP helicase [Burkholderia phymatum STM815]
          Length = 790

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/705 (16%), Positives = 209/705 (29%), Gaps = 157/705 (22%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K  Q      +++    K   ++         L   Y++  ++  V+DF +L++   +LL
Sbjct: 138 KNLQYFINNAKEQGLRPKDVDASDNFNRKFIELYEAYDQQCQREGVVDFPELLLRCYELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                   +R        HIL+DE QDT+ +Q+  ++ L  +             +FAVG
Sbjct: 198 SYNP---PLRAHYQARFRHILVDEFQDTNKLQYAWLKMLAGE----------HNAIFAVG 244

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   +   + R        ++I+L  ++RS   IL   + + + 
Sbjct: 245 DDDQSIYAFRGANVGNMRDFESEFKVR--------NLIKLEQNYRSHGHILDAANHLIAN 296

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +  +           G    V+++E      +                     
Sbjct: 297 NSRRLGKNLRTD---------AGHGEPVRVYEAATDSQE--------------------- 326

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   I  +I T           +   +I VL R    +  I         + 
Sbjct: 327 -----AGWIVEEIRALINTG----------LSRSEIAVLYRSNAQSRTIEHTL----VNV 367

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQ 459
            I           +   +K  +A  R I +  DD +F  ++  P        I ++    
Sbjct: 368 GIPYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAA 427

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R    ++   I        +        I ++       S  +    ++ A    + + +
Sbjct: 428 RLYNCSMAAAIAYVTGKAGTSLGTFANLIAKMRAETAQMSLPETVEYVVRASGLSEFYQN 487

Query: 520 -RFGNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549
            R G E ++ L E +N            L                               
Sbjct: 488 EREGQERLENLQELVNAATAFVSEEGYGLDTPARSIPLRPGATSAPELVVSTDDPGIDVL 547

Query: 550 -----------------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                            L   L             A    V++MTVH AKGLE   VF+ 
Sbjct: 548 DAANPADPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFIT 607

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +F H++                                    ++    EE  RL+
Sbjct: 608 GLEEGLFPHENS----------------------------------AMESDGLEEERRLM 633

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YV +TRA ++L +      +  +  + +T Y++    F    +     LT  +       
Sbjct: 634 YVAITRAKERLYLS----FAQSRMLHGQTRYNIRSRFFDELPQETLKWLTPKVEAGARWG 689

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                         R +  ++            +P+    NE   
Sbjct: 690 GRSDNAGWGRDWFSRPDRQQKGYQGSASYATTSAPLPAFANEQRA 734


>gi|212637392|ref|YP_002313917.1| DNA-dependent helicase II [Shewanella piezotolerans WP3]
 gi|212558876|gb|ACJ31330.1| DNA helicase II [Shewanella piezotolerans WP3]
          Length = 721

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/586 (16%), Positives = 193/586 (32%), Gaps = 116/586 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+++  +  ++DF ++++  ++L   +     I         HIL+DE QDT+ IQ
Sbjct: 173 IYQVYQDSCDRAGLVDFAEILLRAHELWLNKPH---ILDHYQDRFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            S   +  VGD+ QSIY + GA+ + + +             
Sbjct: 230 YAWIRVLAG----------SSANVMIVGDDDQSIYGWRGAQVENLHKFLGDFPT------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RS+A+IL   +++ +   +  G                       LW 
Sbjct: 274 --AQTIRLEQNYRSSANILNASNELIANNPDRMGKK---------------------LW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +       F+ + +       AR I   I++                +
Sbjct: 310 ------TDDKDGEPIGLYCAFNEMDE-------ARFIVGRINDWQDEGG----------K 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            I+          +   IKD M   R I ++ 
Sbjct: 347 LADCAILYRSNAQSRVLEEAL----LHKGIAYRIYGGLRFFERQEIKDAMGYLRLISNKN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P        +  +  T R +  T+++   +            +  +  +
Sbjct: 403 DDAAFERVVNTPARGIGGRTLEIMRTTARQQELTLWDACVRLLEEKVLSGRAANAVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQ 541
             I  L    +  S H     ++ A   +  + +  G +     + L+E +         
Sbjct: 463 DLIVALRVDTEEQSLHRRTDHVIQASGLKLMYETEKGEKARARVENLEELVTAARSFVVP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL + L        +       + V++MT+H+AKGLE P+VF+      +F  
Sbjct: 523 EELEDMGELDAFLSHAALEAGEGQADEFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                           +E  RL YVGMTRA  
Sbjct: 583 QMAIDEG----------------------------------DRLDEERRLCYVGMTRAMQ 608

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           QL I    +     + +       V +      +  +++   S   
Sbjct: 609 QLYITYAESRRIYGRESFARPSRFVKEIPEQFVQEIRMRTQVSAPA 654


>gi|192360802|ref|YP_001982657.1| UvrD/REP helicase domain-containing protein [Cellvibrio japonicus
            Ueda107]
 gi|190686967|gb|ACE84645.1| UvrD/REP helicase domain protein [Cellvibrio japonicus Ueda107]
          Length = 1163

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 141/982 (14%), Positives = 302/982 (30%), Gaps = 116/982 (11%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER---FSLLSS 71
             + +         +  +    + +++       +  + L          E    +  L  
Sbjct: 238  RLLRRALSYHASDLCALADRAATNLQDEGERKNRIHELLGITHLPPTEPEALPHWLALVD 297

Query: 72   FFLTQKFTPQKNIIT----------QEINKKSPDLKEKLKKSQDEFIKIRDRFNTY---- 117
              LT   T +  +             E+ ++       L++   +   +           
Sbjct: 298  LLLTNGGTYRARLTKSEGFPTGKAGAELKEQFAGFIAVLREQNPDLETLLADTRLLPPVA 357

Query: 118  ---KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
               + +    +   L   L A      K+    D+  +       L   D    +  K+D
Sbjct: 358  YAPEQWALLESLTQLLPQLAAELMLVFKQLAATDYSAISQAALLALGDEDEPTDLALKLD 417

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
              I HIL+DE QDT+  Q E++R LT+ +  G       RTLF VGD  QS Y F  A  
Sbjct: 418  YRIRHILVDEFQDTASPQLELLRKLTQGWQTGDG-----RTLFIVGDGMQSCYGFRNANV 472

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTT 293
               L  ++               ++L ++FRS A ++  V++VF+        ++  +  
Sbjct: 473  GLFLDARQQ-----GIGNVALEAVDLCVNFRSQAGVVDWVNQVFAKAFPAQDDIARGAVH 527

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                 + +                     +  Q   T+       + +    A ++   +
Sbjct: 528  YSPSTAFKPLLANPAVQLHIAAYTSGDDEDDLQTGNTAG----SIQQARQREAAQVVALV 583

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                  +               I +LVR R     I            ++    +   L 
Sbjct: 584  RQAKAENPQ-----------GSIAILVRTRTHLREILPAL----TTAGLNYQATEIDRLA 628

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR------------- 460
              +AI DL  L R +L   D +S++ +L++P    + +D+  +   R             
Sbjct: 629  TRMAILDLRTLTRALLDPSDRISWLALLRAPWCGLTLNDMHALANTRLPESHTDNANDWP 688

Query: 461  --HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                    ++ I   +  G ++ + + + +              +   +  A  G    +
Sbjct: 689  LLWPQILHHQQITSISADGHTRLEKLRQVLANAWENRLRKPLRQWIEGVWLALGGPACLV 748

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                    D +  +L    ++E      + +  +  +          +     +++MT+H
Sbjct: 749  DANEC---DNVQSYLTLLDKHENAGR--ILDWQAFNQALQQLFAAPKADADPLLQVMTIH 803

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI---WIPQSKSRNNIVSDL 635
             +KGLE   V +          +    +             +   + P  K ++ + S +
Sbjct: 804  KSKGLEFDTVIIPGLERANRGDEKSLLLWQERINRQGERQLLLGSFAPIGKDKDPLYSFM 863

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                 K  Q E  RLLYVG TRA  +L +   +  + +          +        ++ 
Sbjct: 864  RSEADKQQQFEATRLLYVGCTRAIKRLYLLGCAKQTEDGLQLSGKRSLLACIWPQVQDQC 923

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
              I+                 H  +N        ++     Q  P    SP+ +     +
Sbjct: 924  HLIE---------------QEHQQQNLRTHPLPLLRLPSQWQAPPMDYTSPLASYRGRDF 968

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
              +P  I             +    + G++IH+ LQ             I +YC     L
Sbjct: 969  RSDP--IANPRNLPELENRRNRLARHTGILIHRALQDWVERRLLPGGEDIHAYCACLYPL 1026

Query: 816  WP-------------AKEYKNLLLSITRLLENPMMTTAMSCDSY---SEVSVSGKINCPK 859
            W               +  + +  +++  L +P     ++ D      E+++        
Sbjct: 1027 WNSSLHQRGWARDEIDQSLEKITRALSTTLNDPHGQWLLNPDHLDSQCELALVEHDTQGV 1086

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQE-----IEHIPYTHIAQLSIYEKILKDS 914
            ++      ID+  I     +I +YK+      E     +      +  QL+ Y +++ + 
Sbjct: 1087 REH----IIDRTFIDGGERWILDYKSSEPEGGESVAAFVARERELYQGQLARYRELMANL 1142

Query: 915  YPNKSLVCLLIYVSEPKVFIIP 936
              +      L +    ++  + 
Sbjct: 1143 -ESIPTRTALYFACLGRLEELS 1163


>gi|313771951|gb|EFS37917.1| UvrD/REP helicase [Propionibacterium acnes HL074PA1]
          Length = 1072

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 149/995 (14%), Positives = 298/995 (29%), Gaps = 122/995 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         I    +  +       L KA           I +    L+    +   +
Sbjct: 122  AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K +   +   +   L    K+  D +  I    +     +  L  +       A Y+ 
Sbjct: 182  PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+ +L
Sbjct: 234  LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
               F    + H     + AVGD  Q+IY + GA    +L   R    +    G    ++ 
Sbjct: 291  ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  + R    I+   +               ++  +R   S   + G     +       
Sbjct: 345  LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
             Q     E       ++          +  A  +       TI         +  D  +L
Sbjct: 391  GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            VR+  D   +            + V   +   L     I  ++A  R ++ ++DD +   
Sbjct: 443  VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498

Query: 440  MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483
            +L +P    S DD+  +  +                      + + + +    G  + Q 
Sbjct: 499  LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558

Query: 484  VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             +K +   I      +  SP D    I           +   +      D LD   N   
Sbjct: 559  ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618

Query: 538  RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               ++    ++  +++ L         + RA + + + V + TVH AKGLE P+V + D 
Sbjct: 619  EARKSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678

Query: 594  GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
               VF              ++PS        I  P S S  +  + +    + S   E  
Sbjct: 679  AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737

Query: 649  RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA ++L++  H      +       + D++ D           +  + I   
Sbjct: 738  RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797

Query: 708  -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                 +         +    + +  +K       +  ++  P +
Sbjct: 798  TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801
               ++   L+ +    +           ++    G   H+         + I      + 
Sbjct: 858  LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917

Query: 802  KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                    T+ A        +   L S+ +  E      A      + ++V         
Sbjct: 918  AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971

Query: 861  DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              ++ GR+D +     +     + ++KT      +          QLSIY      +   
Sbjct: 972  QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                +  +  +V   +             A I T 
Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|297616808|ref|YP_003701967.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144645|gb|ADI01402.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680]
          Length = 709

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 182/550 (33%), Gaps = 118/550 (21%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              + +     Y+   K    LDFEDLI+ T  L ++ +    +  K      +I+IDE 
Sbjct: 162 LREVYQKAFRLYQARLKAMNGLDFEDLILLTIRLFRENED---VLGKYRDRFKYIMIDEY 218

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+ +  +L ++           R LF VGD  QSIYS+ GAEP+ + R  R   
Sbjct: 219 QDTNYAQYVLSHTLAQE----------HRNLFIVGDPDQSIYSWRGAEPENIKRFLRDYP 268

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +          II+L  ++RST  IL   + V       +     +   +  +  R    
Sbjct: 269 E--------ARIIKLEKNYRSTKVILDAANAVIRHNCEREEKVLKTDNPVGEKLRR---- 316

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                       D   +       A+ +A TI+ ++        
Sbjct: 317 ------------------------FRAVDGQEE-------AQFVAETIAELVRQG----- 340

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 + +D+ +  R    +  +  + +       +               ++D++A  
Sbjct: 341 -----YRYRDMAIFYRTHAQSRYLEDVLK----RRLVPYYIVGARSFYQRKEVRDVLAYL 391

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGI 478
           +  ++  D LSF  ++  P     +  + +I            E       I   +    
Sbjct: 392 KLAVNPFDTLSFRRVINLPRRGVGDVTLKRIEEFAAASALPVLEALANPADIPGISRRVA 451

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNF 535
              +     I  +  + +          +L +    +    R      E I+ L E  + 
Sbjct: 452 EALEEFYGLIKFVQVLGENEPVMAVLEQLLESSGYVEDICRRDPLGAEERIENLRELKSV 511

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            L  ++    +L E ++E+     T         + V +MT H+AKGLE PVVF+     
Sbjct: 512 ALEFDRTRGGNLGEFLAEVSLVQDTDTTDV---SDAVAMMTFHSAKGLEFPVVFMTGMEE 568

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F     +    +                                       RL YVG+
Sbjct: 569 GIFPSAKAETEAEIEEE-----------------------------------RRLCYVGI 593

Query: 656 TRASDQLIIC 665
           TRA ++L + 
Sbjct: 594 TRAKERLFLS 603


>gi|322646964|gb|EFY43466.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|323227583|gb|EGA11739.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
          Length = 720

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|329964807|ref|ZP_08301830.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
 gi|328524658|gb|EGF51721.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
          Length = 767

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/619 (15%), Positives = 185/619 (29%), Gaps = 121/619 (19%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y E  ++   +DF+DL+  T  L +       +     +   +IL+D
Sbjct: 169 AAKMPAVRDIYRRYWERCRQADAMDFDDLLFYTFLLFRDHPE---VLAHYQELFRYILVD 225

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  L ++           + +  VGD+ QSIYSF GA+   +L   ++
Sbjct: 226 EYQDTNFAQHSIVLQLAKN----------HQHVCVVGDDAQSIYSFRGADIDNILYFTKV 275

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    +        S            
Sbjct: 276 YP--------GTKVFKLEQNYRSTQTIVRAANSLIEKNQRQIHKEVFS------------ 315

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +   I+ +   +   
Sbjct: 316 ---------------EKEKGESIGVYQAYSDVEEGDI--------VVNKIAELRRREH-- 350

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  VL R    + +     R       +               IKD++A
Sbjct: 351 -------YAYADFAVLYRTNAQSRVFEEAMR----KRGMPYRIYGGLSFYQRKEIKDVIA 399

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI         +++  + +          
Sbjct: 400 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIIAAATENNVSLWTVLCEPLTYGLNLNK 459

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
             + K Q     I   I      S ++  T I+               E     + ++E 
Sbjct: 460 GTVGKLQGFRDLISGFIAGVTEKSAYETGTEIIRQSGIINDVCQDNSPENLSRKENIEEL 519

Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N           E N    L + +SE+             +  ++ +MTVH+AKGLE  
Sbjct: 520 VNGMSDFCARRQEEGNPNILLGDFLSEVSLLTDQDSD-KDGDDEKITLMTVHSAKGLEFK 578

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F                                              EE
Sbjct: 579 NVFVVGMEENLFPSGMAGNS----------------------------------ARALEE 604

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA +   +          K    +    + D       + +  + +    
Sbjct: 605 ERRLFYVAITRAEEHCFLSFAKTRFRYGKMEFGSPSRFLKDIDARFLHLPQDAVVSRRID 664

Query: 707 DEWIAYEWSTHHPENTPLE 725
            E  A+         T   
Sbjct: 665 AEAGAFRPRQQIISPTVPR 683


>gi|146312904|ref|YP_001177978.1| exonuclease V subunit beta [Enterobacter sp. 638]
 gi|145319780|gb|ABP61927.1| exodeoxyribonuclease V, beta subunit [Enterobacter sp. 638]
          Length = 1181

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 118/876 (13%), Positives = 270/876 (30%), Gaps = 133/876 (15%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 +   +  +  + L        +       K +   L F+D++   +  L   +  
Sbjct: 309  LFVAIETLLSQPLTLNDLMITRAMAEIREAVAREKNRRGELGFDDMLSRLDAALS-SENG 367

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I       +IDE QDT   Q+ + R +                L  +GD KQ+I
Sbjct: 368  EALAAAIRARFPVAMIDEFQDTDPQQYRIFRRIWRK--------QPDTALLLIGDPKQAI 419

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    ++ +   +   T          L  ++RS   ++  V+ +F   + A  
Sbjct: 420  YAFRGADIFTYMKARSEVEAHYT----------LDTNWRSAPGMVASVNTLFERMDAAFM 469

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
              E   + ++                 +  ++  +  P    W    +        + +A
Sbjct: 470  FKEIPFSPVKSAPQNHA----------LRFEYQGKTQPAMNFWLMNGEGCGVSDYQNAMA 519

Query: 347  RRIAYTISNMIGTDTIFSNGKKRV-----IQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             + A  I + +           +      + A DI VLVR R++  LI      L     
Sbjct: 520  HQCAAQIRDWLSAGVRGEALLWKGEKAKSVSASDITVLVRSRQEASLIRDALTSLDIP-- 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  + + L  ++++ L + +L+ E + +    L S +   +  DI  +     
Sbjct: 578  -SVYLSNRDSVFETLEAQEMLWLLQAVLTPERESTLRSALASSMLGLNARDIDALNNDEA 636

Query: 462  ETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
            E    ++ + +       ++  + V+  + EL+              +L    G ++   
Sbjct: 637  E----WDAVVEEFVHYRERWLKRGVMAMLRELMSQRH------VAENMLATSGGERRLTD 686

Query: 520  RFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                     + E L      L +E      L + I++      + +    ++ + V+I+T
Sbjct: 687  IL------HISELLQEAGSQLESEHALVRWLSQHIADPNSNAASQQMRLESDKHLVKIVT 740

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P+V L    +     +                       +    +     I
Sbjct: 741  IHKSKGLEYPLVCLPFIANYRAQDQAFYHDRDSFE-------------AILDLSRADASI 787

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------- 683
            +  +     E  RLLYV +TR+     +          +    + +              
Sbjct: 788  ELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLFRRRGEKTGESDFHQSALGRLIQQGEP 847

Query: 684  -----MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                 +        +    ++++  I+   W   E S        + R       +    
Sbjct: 848  KDAAGLKQCLEALCDENIALQISGPIDSTRWKMPEISAPDLSARQITRGLVDDWRVTSYS 907

Query: 739  IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
              ++       ++     ++ S +    +    +     +  + G  +H L + +    +
Sbjct: 908  GLQQHGQNFAQELMPKLDVDASGVGEVIEQPELTPHQFPRGASPGTFLHSLFEEL-DFTQ 966

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVS 852
                 +++    K    + A     L   +T +L+ P+      ++   + +   E+   
Sbjct: 967  PVSPEWVSEMLQKGG--YDAHWQPVLTEWVTSILQAPLTESGISLSHLAAKEKQVEMEFY 1024

Query: 853  GKINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKTH 886
              I  P                              ++ G ID +       ++ +YK++
Sbjct: 1025 IPIAGPLTASALDGLIREYDPLSKACPALNFRQVSGMLKGFIDLVFRHDGRYYLLDYKSN 1084

Query: 887  HHVPQEIEHIPY---------THIAQLSIYEKILKD 913
                    +             +  Q  +Y   L  
Sbjct: 1085 WLGDNSEAYTQEAMAAAMQSHRYDLQYQLYTLALHR 1120


>gi|82701697|ref|YP_411263.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196]
 gi|82409762|gb|ABB73871.1| ATP-dependent DNA helicase UvrD [Nitrosospira multiformis ATCC
           25196]
          Length = 743

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/717 (14%), Positives = 222/717 (30%), Gaps = 146/717 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   Q   + + F +L S     +    K I+ + +         +  +        ++
Sbjct: 96  LRAHHQDAGLPQTFQILDSA---DQLAVIKRIL-KNLGADDEKFPPRQVQWF--INNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   ++            A YE    K  V+DF +L++ + +LL + ++   +R  
Sbjct: 150 EGLRASQVEAYDDYTRKMVEFYASYEHQCNKEGVVDFAELLLRSYELLMRNEI---VREH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDTS +Q++ +R L                +FAVGD+ QSIY+F GA
Sbjct: 207 YRSRFLHILVDEFQDTSRLQYKWLRLLAGPKTA----------VFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   ++  +           II+L  ++RS  +IL   + +        G +    
Sbjct: 257 NTGNMREFEQDFR--------IPRIIKLEQNYRSHGNILDAANTLIRNNNGRLGKN---- 304

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW                 + +  D           A  I   
Sbjct: 305 -----------------LW------TSEGRGEPIRVYNAPTDFDE--------AAFIVDE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           + ++              +Q   I +L R    + ++         +  +          
Sbjct: 334 VKSLRAEG----------VQLSQIALLYRSNAQSRVLEHAL----FNASLPYRVYGGMRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ 471
            +   IK  +A  R I + EDD + + ++  P        + ++  + R +  +++E + 
Sbjct: 380 FERQEIKHALAYLRMIANPEDDNALLRIVNFPARGIGLRSLEQLQDEVRQQGGSLWEAML 439

Query: 472 KFANCGISK------------------------FQHVIKYIHELIHIAQFCSPHDFFTLI 507
           K                                 +  +  I  +  + +     +    +
Sbjct: 440 KKCRGREPATSGLLNKSSAGVGENKEPDRPRRGIEGFVALIESMRQVCETLPLPEIVEHM 499

Query: 508 LGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH 565
           L      + + + R G + ++ L+E +        +     L   ++             
Sbjct: 500 LEHSGLIRHYQAEREGADRLENLNELVTAATAFVHEAEDDGLAVFLNHASLEAGE--HQA 557

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               + +++MTVH+AKGLE   VFL      +F H + +                     
Sbjct: 558 GGGEDALQLMTVHSAKGLEFHSVFLSGLEEGLFPHDNSRN-------------------- 597

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                         +    EE  RL+YV +TRA  +L +    +     ++        +
Sbjct: 598 --------------EAGGLEEERRLMYVAVTRAKRRLYLSFAQSRMLHGQTRYNIPTRFI 643

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                  E + +  L       +   +  +   P     +R +  +  + E      
Sbjct: 644 -------EEIPQGVLKWLQPVQKTAPWRPAPLSPTQEVAQRPQIREMGVREATASPW 693


>gi|66048289|ref|YP_238130.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae B728a]
 gi|63258996|gb|AAY40092.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae B728a]
          Length = 727

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 119/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIINNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L         H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLAAKVMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|28872621|ref|NP_795240.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28855877|gb|AAO58935.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 727

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 193/592 (32%), Gaps = 116/592 (19%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +  S    LT  K +   YE A ++  V+DF +L++   DL +       +  
Sbjct: 154 EGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDLWRDNPG---LLA 210

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+ QSIY + G
Sbjct: 211 HYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDDDQSIYGWRG 260

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + + +                 +I L  ++RSTA IL   + +        G     
Sbjct: 261 AKIENIHQYSDDFP--------DTEVIRLEQNYRSTASILKAANGLIINNSGRLGK---- 308

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            +LW           + +  +  + F+   +       AR +  
Sbjct: 309 -----------------ELW-------TDVGDGELINLYAAFNEHDE-------ARYVVE 337

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           TI + + T           I   DI +L R    + ++           +I         
Sbjct: 338 TIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERIPYRIYGGQR 383

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470
             +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH   +++E +
Sbjct: 384 FFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARHADVSMWEAM 443

Query: 471 Q------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521
           +                   I+ I  L         H     ++         +Q     
Sbjct: 444 RLLVANKGLTGRAAGALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLITYHEQEKGEK 503

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
           G   ++ L+E ++     E +     L  L + L              + + +++MT+H+
Sbjct: 504 GQARVENLEELVSAARAFENHESDEELTPLAAFLGHASLEAGDTQAQEHEDSIQLMTLHS 563

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P VFLV     +F HK   +                                  
Sbjct: 564 AKGLEFPHVFLVGMEEGLFPHKMSLEEPG------------------------------- 592

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                EE  RL YVG+TRA  QL++                    V +    
Sbjct: 593 ---RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPA 641


>gi|28197981|ref|NP_778295.1| DNA-dependent helicase II [Xylella fastidiosa Temecula1]
 gi|28056041|gb|AAO27944.1| DNA helicase II [Xylella fastidiosa Temecula1]
 gi|307579063|gb|ADN63032.1| DNA-dependent helicase II [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 728

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/629 (16%), Positives = 199/629 (31%), Gaps = 121/629 (19%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +S    +   + +   Y+E   +  ++DF +L++  ++LL+       +   
Sbjct: 154 RRPEHIQPESHDDWIETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPA---LLTH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  ILIDE QDT+ IQ+  +R L           +    +FAVGD+ Q+IY + GA
Sbjct: 211 YRSRFREILIDEFQDTNAIQYAFVRVLA----------NDTGHIFAVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V    +               I L  ++RS+A+IL   + + +   +  G      
Sbjct: 261 KVEHVQHFLKDFPN--------VQTIRLEQNYRSSANILDAANAIIAHNPDRIGKR---- 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW             +     + ++ + +       AR I   
Sbjct: 309 -----------------LW-------TESGVGESIDLYAAYNEIDE-------ARYIVER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 +I VL R    +     + +       I          
Sbjct: 338 ARQWVRDGG----------SYGEIAVLYRSNAQSRAFEEVLQSE----HIPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F  ++ +P+    E  + ++    R +   +++   
Sbjct: 384 FERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIGERTLDEVRHLARTQGLALWDAAM 443

Query: 472 KFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                        +     +  + +L          +    +L   + RQ +        
Sbjct: 444 ACTQSTTLTARARNALASFLNLLQQLALETNQMDLAERIDHMLQRSELRQHWKKEARGSL 503

Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575
                 + LDE ++   R            + EL + L             A    V++M
Sbjct: 504 DAESRQENLDELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQVQAGEEGVQLM 563

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P+VFLV   + +F                                     
Sbjct: 564 TLHSAKGLEFPLVFLVGLENGLFPS----------------------------------A 589

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
               +    EE  RL YVG+TRA  +LI+          K N       + +   +    
Sbjct: 590 RSLDEHGRLEEERRLAYVGITRARHKLILSYAQARRIHGKDNYNVPSRFLREIPQDLLHE 649

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPL 724
            +  +  S           +    +  P+
Sbjct: 650 VRPTIQVSHQPPLGATQRPAHDERDAAPI 678


>gi|327329920|gb|EGE71674.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            HL097PA1]
          Length = 1072

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 136/919 (14%), Positives = 278/919 (30%), Gaps = 119/919 (12%)

Query: 101  KKSQDEFIKIRDRFNTYKMFKSTLASLTL-----AKYLNAHYEEAKKKNCVLDFEDLIIN 155
             + +   +    +    +          +        L A Y+  KK+  +++F D ++ 
Sbjct: 190  ARWRQMLLAAPTKRRGDRYADIDKWLSRVDEREELLDLVAAYQNLKKERGLVEFGDRMVQ 249

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               L+        +  ++      +L+DE QDTS  Q +V+ +L   F    + H     
Sbjct: 250  ALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL---FSGPDSAHGMGHP 303

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            + AVGD  Q+IY + GA    +L   R    +    G    ++ L  + R    I+   +
Sbjct: 304  VMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLSLATNRRCADQIINAAN 360

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
                           ++  +R   S   + G     +        Q     E       +
Sbjct: 361  --------------VASEELRQTLSSAVESGDHDPADDRAEVAVGQPLIAPEGNRRGEVT 406

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
            +      +   +  A  +       TI         +  D  +LVR+  D   +      
Sbjct: 407  VAAYPDWAKECQTCADILVEAKERGTI--------ARWSDAAILVRRNSDVADLYDSLTA 458

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  + V   +   L     I  ++A  R ++ ++DD +   +L +P    S DD+  
Sbjct: 459  ----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMATLLAAPRLGLSTDDLAM 514

Query: 456  ICTQ----------------RHETETVYEYIQKFANCGISKFQHVIKYIHELI---HIAQ 496
            +  +                      + + + +    G  + Q  +K +   I      +
Sbjct: 515  VYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQCALKRVCAEIVEVDAHR 574

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSY-SSLQELIS 552
              SP D    I           +   +      D LD   N      ++    ++  +++
Sbjct: 575  ADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIREARRSDPTMTIAGIVT 634

Query: 553  ELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-- 607
             L         + RA + + + V + TVH AKGLE P+V + D    VF           
Sbjct: 635  WLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDMAQGVFPSTSTPDNFTS 694

Query: 608  ---IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
               ++PS        I  P S S  +  + +    + S   E  RL YV +TRA ++L++
Sbjct: 695  EAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA-RLAYVALTRAKERLVV 753

Query: 665  CKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD---------------- 707
              H      +       + D++ D           +  + I                   
Sbjct: 754  SWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAGTPWPVFAKDVGHGLID 813

Query: 708  ---EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                 +         +    + +  +K       +  ++  P +   ++   L+ +    
Sbjct: 814  NTSRSVDDPGQADRVKAWRTDADALLKDARRHIDLQDEVALPPRLTTSQIVRLHANPQAF 873

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKRKNFITSYCTKNAKLWP 817
            +           ++    G   H+         + I      +         T+ A    
Sbjct: 874  RDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEIAELDEESITQEAVAVE 933

Query: 818  AKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
                +   L S+ +  E      A      + ++V           ++ GR+D +     
Sbjct: 934  PSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIGQTVVRGRLDAVVADPD 987

Query: 877  NI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPK 931
            +     + ++KT      +          QLSIY      +       +  +  +V   +
Sbjct: 988  HPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGIDPSRVRAVFYHVGANE 1039

Query: 932  VFIIPQNKLNKAFAEISTK 950
                         A I T 
Sbjct: 1040 TISAEPLLDADQVAAILTA 1058


>gi|221234533|ref|YP_002516969.1| DNA helicase II [Caulobacter crescentus NA1000]
 gi|220963705|gb|ACL95061.1| DNA helicase II [Caulobacter crescentus NA1000]
          Length = 811

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/604 (16%), Positives = 182/604 (30%), Gaps = 120/604 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y+E  +     DF DL+++   L         +  +  Q   ++++DE QDT++ Q
Sbjct: 215 LYRQYQERLRILNACDFGDLLLHNISLFTGHPD---VLDEFQQRFKYVMVDEYQDTNVAQ 271

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R L +            + +  VGD+ QSIY + GAE   +LR +R          
Sbjct: 272 YLWLRLLAQ----------GRQNVCCVGDDDQSIYGWRGAEVDNILRFERDFP------- 314

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RST  IL     + +  +   G +                     LW 
Sbjct: 315 -GAKVVRLECNYRSTEHILAAASGLITANKGRLGKT---------------------LW- 351

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       ++   +  +D   +        R IA  I                  +
Sbjct: 352 ------TPSKGGEKVKVSGVWDGEAES-------RLIADEIERAKKAGR----------K 388

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              + +LVR              L+    I           +   I+D  A  R I S +
Sbjct: 389 YSQMAILVRASFQMRAFEERFVLLQ----IPYKVVGGPRFFERAEIRDAHAYLRLIQSPD 444

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DDL+F  ++ +P     +  + K+    R    +  E  +      +      +   + I
Sbjct: 445 DDLAFERIVNTPKRGIGDTSVQKLLQIARLGGISTVEAARQIITSDELPARTRTALSNFI 504

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN 542
           + +     +            +L             G      ++ L E +      +  
Sbjct: 505 RDLDRWRSLVGTAHHQRLLETVLEESGYTDALRLDKGPTSQTRLENLKELVQSMGAFDT- 563

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                  L + LE     +     A  + V IMT+H+AKGLE P+VFL      VF  + 
Sbjct: 564 -------LEAYLEHVSLVMDLDREATGDAVWIMTLHSAKGLEFPLVFLPGWEEGVFPSQR 616

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                            +    +   EE  RL YVG+TRA ++ 
Sbjct: 617 S--------------------------------MDDKGEKGLEEERRLAYVGITRAREEA 644

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            I   +N     +   +     V +                               P  +
Sbjct: 645 RISFVANRQVYGRWTSQLPSRFVDELPIAHVDAASETGYYGGGPGMQSTAASRWDDPGTS 704

Query: 723 PLER 726
             + 
Sbjct: 705 AFQA 708


>gi|15600636|ref|NP_254130.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAO1]
 gi|107104547|ref|ZP_01368465.1| hypothetical protein PaerPA_01005625 [Pseudomonas aeruginosa PACS2]
 gi|218894546|ref|YP_002443416.1| DNA-dependent helicase II [Pseudomonas aeruginosa LESB58]
 gi|313111618|ref|ZP_07797417.1| DNA helicase II [Pseudomonas aeruginosa 39016]
 gi|9951773|gb|AAG08828.1|AE004957_3 DNA helicase II [Pseudomonas aeruginosa PAO1]
 gi|7229494|gb|AAF42852.1| mismatch repair protein MutU [Pseudomonas aeruginosa PAO1]
 gi|218774775|emb|CAW30592.1| DNA helicase II [Pseudomonas aeruginosa LESB58]
 gi|310883919|gb|EFQ42513.1| DNA helicase II [Pseudomonas aeruginosa 39016]
          Length = 728

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/592 (17%), Positives = 192/592 (32%), Gaps = 116/592 (19%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +       L     +   YE A  +  V+DF +L++   DL +       +  
Sbjct: 154 EGLRPQHIQPGGDLFLATMLKIYEAYEAACARAGVIDFSELLLRALDLWRDHPG---VLE 210

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +   HIL+DE QDT+ +Q+  +R L +             +L  VGD+ QSIY + G
Sbjct: 211 HYQRRFRHILVDEFQDTNAVQYAWLRILAK----------GGDSLMVVGDDDQSIYGWRG 260

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + + +                 +I L  ++RSTA IL   + + +  +   G     
Sbjct: 261 ARIENIQQFSDDF--------ADAEVIRLEQNYRSTASILKAANALIANNQGRLGK---- 308

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            +LW           + +  S  + F+   +       AR +  
Sbjct: 309 -----------------ELW-------TDGEDGESLSLYAAFNEHDE-------ARYVVE 337

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           +I + +             +   +I +L R    + ++       K    I         
Sbjct: 338 SIESALKGG----------LARSEIAILYRSNAQSRVLEEALLREK----IPYRIYGGQR 383

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470
             +   IK+ MA  R +  + +D +   ++  P     E  +  I    R    +++E I
Sbjct: 384 FFERAEIKNAMAYLRLLDGRGNDAALERVVNVPARGIGEKTVESIREFARGNDVSMWEAI 443

Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521
           +             S     ++ I  L         H     ++         ++     
Sbjct: 444 RLMIANKVLPGRAASALTGFVELIENLSAKVMDMPLHLMTQTVIEQSGLISYHKEEKGEK 503

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
           G   ++ L+E ++     E +     L  L + L        +    A+ + V++MT+H+
Sbjct: 504 GQARVENLEELVSAARAFENSEEEEDLTPLQAFLSHASLEAGETQADAHEDSVQLMTLHS 563

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VFLV     +F HK                                      
Sbjct: 564 AKGLEFPLVFLVGMEEGLFPHKMSL----------------------------------E 589

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           +    EE  RL YVG+TRA  +L++                    + +    
Sbjct: 590 ESGRLEEERRLAYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFIREIPPA 641


>gi|254237872|ref|ZP_04931195.1| DNA helicase II [Pseudomonas aeruginosa C3719]
 gi|254242995|ref|ZP_04936317.1| DNA helicase II [Pseudomonas aeruginosa 2192]
 gi|126169803|gb|EAZ55314.1| DNA helicase II [Pseudomonas aeruginosa C3719]
 gi|126196373|gb|EAZ60436.1| DNA helicase II [Pseudomonas aeruginosa 2192]
          Length = 728

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 104/592 (17%), Positives = 192/592 (32%), Gaps = 116/592 (19%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +       L     +   YE A  +  V+DF +L++   DL +       +  
Sbjct: 154 EGLRPQHIQPGGDLFLATMLKIYEAYEAACARAGVIDFSELLLRALDLWRDHPG---VLE 210

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +   HIL+DE QDT+ +Q+  +R L +             +L  VGD+ QSIY + G
Sbjct: 211 HYQRRFRHILVDEFQDTNAVQYAWLRILAK----------GGDSLMVVGDDDQSIYGWRG 260

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + + +                 +I L  ++RSTA IL   + + +  +   G     
Sbjct: 261 ARIENIQQFSDDF--------ADAEVIRLEQNYRSTASILKAANALIANNQGRLGK---- 308

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            +LW           + +  S  + F+   +       AR +  
Sbjct: 309 -----------------ELW-------TDGEDGESLSLYAAFNEHDE-------ARYVVE 337

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           +I + +             +   +I +L R    + ++       K    I         
Sbjct: 338 SIESALKGG----------LARSEIAILYRSNAQSRVLEEALLREK----IPYRIYGGQR 383

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470
             +   IK+ MA  R +  + +D +   ++  P     E  +  I    R    +++E I
Sbjct: 384 FFERAEIKNAMAYLRLLDGRGNDAALERVVNVPARGIGEKTVESIREFARGNDVSMWEAI 443

Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521
           +             S     ++ I  L         H     ++         ++     
Sbjct: 444 RLMIANKVLPGRAASALTGFVELIENLSAKVMDMPLHLMTQTVIEQSGLISYHKEEKGEK 503

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
           G   ++ L+E ++     E +     L  L + L        +    A+ + V++MT+H+
Sbjct: 504 GQARVENLEELVSAARAFENSEEEEDLTPLQAFLSHASLEAGETQADAHEDSVQLMTLHS 563

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VFLV     +F HK                                      
Sbjct: 564 AKGLEFPLVFLVGMEEGLFPHKMSL----------------------------------E 589

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           +    EE  RL YVG+TRA  +L++                    + +    
Sbjct: 590 ESGRLEEERRLAYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFIREIPPA 641


>gi|291085881|ref|ZP_06354319.2| DNA helicase II [Citrobacter youngae ATCC 29220]
 gi|291069706|gb|EFE07815.1| DNA helicase II [Citrobacter youngae ATCC 29220]
          Length = 738

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 184/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 189 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 245

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 246 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 290

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST +IL+  + +        G                       L
Sbjct: 291 ---GAETIRLEQNYRSTNNILSAANALIENNNGRLGKK---------------------L 326

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 327 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ----- 367

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 368 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 418

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 419 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 478

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ +  L         H     ++     R  +    G      I+ LDE +  T +  
Sbjct: 479 FMELVDALAQETADMPLHVQTDRVIKDSGLRMMYEQEKGEKGQTRIENLDELVTATRQFS 538

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 539 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 598

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 599 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 624

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 625 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEACVEEVRLRAT 667


>gi|290513159|ref|ZP_06552521.1| DNA helicase II [Klebsiella sp. 1_1_55]
 gi|289774370|gb|EFD82376.1| DNA helicase II [Klebsiella sp. 1_1_55]
          Length = 722

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/553 (18%), Positives = 179/553 (32%), Gaps = 116/553 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 311 W-------TDGTDGEPISLYCAFNDLDE-------ARFVVNRIKTWQENGGALEQ----- 351

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 352 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++       A    S  Q 
Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLKEKVLAGRAASALQR 462

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 463 FMELIDALAQETADMPLHVQTDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFS 522

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMF 582

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 583 PSQMALDEGG----------------------------------RLEEERRLAYVGVTRA 608

Query: 659 SDQLIICKHSNTS 671
             +L +       
Sbjct: 609 MQKLTLTYAETRR 621


>gi|28377922|ref|NP_784814.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1]
 gi|308180103|ref|YP_003924231.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28270756|emb|CAD63661.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1]
 gi|308045594|gb|ADN98137.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 755

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 105/752 (13%), Positives = 220/752 (29%), Gaps = 140/752 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L   S  +     
Sbjct: 30  GAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLLGESAQEVWVST 89

Query: 66  FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-------------EFIKI 110
           F  L    L +           T     +   L +++   Q+                  
Sbjct: 90  FHALCVRILRRDIEQIGYNRAFTIAGTSEQRTLVKRILTEQNIDSKKFDPRSILSAISNA 149

Query: 111 RDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +M+K + A    ++   +   Y+     +  +DF+DLI+ T  L K+   +  
Sbjct: 150 KNDLQTPEMYKESAASPFESVVADVYLQYQRELAADQAVDFDDLIMLTIQLFKQNPET-- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L + +          + L  VGD  QSIY 
Sbjct: 208 -LAWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKY----------KNLCVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++   +           + L  ++RST  IL+  + V +     +   
Sbjct: 257 WRGANMENILDFEKDYPQ--------ADTVMLEQNYRSTKTILSAANAVINNNSTRRPKK 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       +++   +   +    +S             
Sbjct: 309 ---------------------LW------TENEPGDKISYYRGQSESDETH--------F 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +  D +            D  +L R    + ++            I      
Sbjct: 334 VIAKIQESMQQDKM---------DYGDFAILYRTNAQSRVMEESL----VKANIPYTMVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I+D+++     ++ +D ++F  ++  P     +  + K+         ++ 
Sbjct: 381 GNKFYDRKEIRDVLSYLTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSML 440

Query: 468 EYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           E                         ++EL  + ++ S  D    IL      +      
Sbjct: 441 EAASNVDMANGISARAKGALAKFAATMNELRAMREYLSVTDLTQEILDRTGYMKALKDAK 500

Query: 522 ------GNEVIDVLDEFLNFTLRNEQN---SYSSLQELISELEQYPPTIKRA-HSANHNE 571
                     I+ ++EFL+ T + + +         + +  L                  
Sbjct: 501 ATKSLEAQARIENIEEFLSVTKQFDDSYQPEDEDSDKFVDFLADLALVSDVDNVEEEPQA 560

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F                                 
Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEEGIFPLSRAMMDEDELEEERRL--------------- 605

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688
                               YVG+TRA  +L +    +       + +    + + +   
Sbjct: 606 -------------------AYVGITRAEKKLYLTNAYSRMLYGRRQNNPASRFVEEIEPE 646

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
              +E       +           E     P 
Sbjct: 647 LLKNENTLDGASSTGPKVPFGADRERRAFTPS 678


>gi|289625507|ref|ZP_06458461.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649762|ref|ZP_06481105.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330870933|gb|EGH05642.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330986942|gb|EGH85045.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 727

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 119/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L         H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|152985841|ref|YP_001351544.1| DNA-dependent helicase II [Pseudomonas aeruginosa PA7]
 gi|150960999|gb|ABR83024.1| DNA helicase II [Pseudomonas aeruginosa PA7]
          Length = 728

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/591 (17%), Positives = 192/591 (32%), Gaps = 116/591 (19%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +       L     +   YE A  +  V+DF +L++   DL +       +  
Sbjct: 154 EGLRPQHIQPGGDLFLATMLKIYEAYEAACARAGVIDFSELLLRALDLWRDHPG---VLE 210

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +   HIL+DE QDT+ +Q+  +R L +             +L  VGD+ QSIY + G
Sbjct: 211 HYQRRFRHILVDEFQDTNAVQYAWLRILAK----------GGDSLMVVGDDDQSIYGWRG 260

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + + +                 +I L  ++RSTA IL   + + +  +   G     
Sbjct: 261 ARIENIQQFSDDF--------ADAEVIRLEQNYRSTASILKAANALIANNQGRLGK---- 308

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            +LW           + +  S  + F+   +       AR +  
Sbjct: 309 -----------------ELW-------TDGEDGESLSLYAAFNEHDE-------ARYVVE 337

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           +I + +             +   +I +L R    + ++       K    I         
Sbjct: 338 SIESALKGG----------LARSEIAILYRSNAQSRVLEEALLREK----IPYRIYGGQR 383

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470
             +   IK+ MA  R +  + +D +   ++  P     E  +  I    R    +++E I
Sbjct: 384 FFERAEIKNAMAYLRLLDGRGNDAALERVVNVPARGIGEKTVESIREFARGNDVSMWEAI 443

Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521
           +             S     ++ I  L         H     ++         ++     
Sbjct: 444 RLMIANKVLPGRAASALTGFVELIENLSAKVMDMPLHLMTQTVIEQSGLIGYHKEEKGEK 503

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
           G   ++ L+E ++     E +     L  L + L        +    A+ + V++MT+H+
Sbjct: 504 GQARVENLEELVSAARAFENSEEEEDLTPLQAFLSHASLEAGETQADAHEDSVQLMTLHS 563

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VFLV     +F HK                                      
Sbjct: 564 AKGLEFPLVFLVGMEEGLFPHKMSL----------------------------------E 589

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           +    EE  RL YVG+TRA  +L++                    + +   
Sbjct: 590 ESGRLEEERRLAYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFIREIPP 640


>gi|309751169|gb|ADO81153.1| DNA helicase II [Haemophilus influenzae R2866]
          Length = 727

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 178 IYKIYQDTCDRAGLVDFAELLIRAYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 235 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 277 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 613 KLTISYAESRR 623


>gi|127514313|ref|YP_001095510.1| DNA-dependent helicase II [Shewanella loihica PV-4]
 gi|126639608|gb|ABO25251.1| ATP-dependent DNA helicase UvrD [Shewanella loihica PV-4]
          Length = 726

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 99/587 (16%), Positives = 198/587 (33%), Gaps = 116/587 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     I     +   +IL+DE QDT+ IQ
Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---ILEHYQERFKNILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            S   +  VGD+ QSIY + GA+ + + R  +          
Sbjct: 230 YAWIRVLAG----------STANVMIVGDDDQSIYGWRGAQVENLHRFLQDFPA------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RS+ +IL   +++ +   +  G                       LW 
Sbjct: 274 --AQTIRLEQNYRSSGNILNASNELIANNPDRLGKK---------------------LW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + ++      F+ + +       AR I   I++                 
Sbjct: 310 ------TEDKDGEKIGLYCAFNEMDE-------ARFIVGRITDWQDMGG----------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            ++          +   IKD M   R I ++ 
Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGMAYRIYGGLRFFERQEIKDAMGYLRLISNKN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P     +  +  +  T R +  T+++   +  +         +  +  +
Sbjct: 403 DDAAFERIINTPTRGIGDRTLDILRSTARQQELTLWQTCLRLLDEKVLSGRAANAVRSFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQ 541
             I  L       S H     ++ A   +  + +  G +     + L+E +         
Sbjct: 463 DLIVTLQQETAEQSLHRMTDHVIQASGLKAMYEAEKGEKARARVENLEELVTAARTFVMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL + L        +    A  + V++MT+H+AKGLE P+VF+      +F  
Sbjct: 523 EDLEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                           +E  RL YVGMTRA  
Sbjct: 583 QMAMDEG----------------------------------DRLDEERRLCYVGMTRAMK 608

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           QL I    +     + N       + +   +  +  +++ + S    
Sbjct: 609 QLYITYAESRRIYGRENYARPSRFIKEIPGDYVQEIRMRTSVSAPAS 655


>gi|121533515|ref|ZP_01665343.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1]
 gi|121308074|gb|EAX48988.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1]
          Length = 733

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/630 (16%), Positives = 202/630 (32%), Gaps = 121/630 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y++  ++N  +DF+DL++    LL++ +    +R +   +  +ILIDE QDT+
Sbjct: 169 VAEVYRLYQQKLQQNNAVDFDDLLLLAVRLLERNEE---VRRRYQDKFQYILIDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + R L              R +  VGD  QSIY++ GA+ + +L  +        
Sbjct: 226 RAQYLLARLLAA----------KHRNICVVGDADQSIYAWRGADIRNILDFEADYP---- 271

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V       +  +                     
Sbjct: 272 ----DAKVIKLEQNYRSTQTILAAANAVIENNTGRKPKA--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW             +  +    FD   +       AR IA T++ +             
Sbjct: 307 LW-------TENSRGEPITHYLAFDERDE-------ARFIADTVTKLH---------TVY 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 + VL R    + +I            I           D   IKD++A  R IL
Sbjct: 344 RASYGSMAVLYRTNAQSRVIEEAL----MRNGIPYTIVGGVKFYDRKEIKDILAYLRVIL 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQ 482
           +  D +S + ++  P     +  I ++         ++++ +                 +
Sbjct: 400 NPADAVSLLRIINVPRRGVGDATIARLTDYAAQNGISLFDVVSNPDMVPGLTARAKRPLE 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539
           ++ + I  LI +       D    ++       +       +     + L E L+     
Sbjct: 460 NLAELIFNLIAVKDQLPVADLIERVMQDSGYLAELEKEQTPQADGRIENLRELLSVAKEF 519

Query: 540 EQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
               +  +L+  ++ +           +     V +MT+H+AKGLE P VFL      +F
Sbjct: 520 ATTAAEDTLENFLAHVALVSDIDTAELA--DERVTLMTLHSAKGLEFPYVFLAGMEEGIF 577

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                      + +   EE  RL YVG+TRA
Sbjct: 578 PHSRTL----------------------------------MDEEEIEEERRLCYVGITRA 603

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH-----NDERVKKIKLTNSINKDEWIAYE 713
             +L +      +    +        + +        +    ++     +++        
Sbjct: 604 ERKLYLTNARLRTIYGNTVMYPPSRFLAEIPAELFERHGGPARQTAAGAAVSPAPAATPR 663

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKL 743
            +   P    + R    +  + ++    K 
Sbjct: 664 PAPVRPSAAAVSRPSAREWRVGDKAQHAKW 693


>gi|330952409|gb|EGH52669.1| DNA-dependent helicase II [Pseudomonas syringae Cit 7]
 gi|330970255|gb|EGH70321.1| DNA-dependent helicase II [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 727

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 119/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIINNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L         H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLAAKVMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|291529911|emb|CBK95496.1| ATP-dependent DNA helicase PcrA [Eubacterium siraeum 70/3]
          Length = 792

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 92/551 (16%), Positives = 174/551 (31%), Gaps = 116/551 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L+ AK +   Y+   +    LDF+D+I+ T  L  +      +         +I++DE Q
Sbjct: 224 LSTAKTIYTDYQARLEAANALDFDDIIMLTVKLFAQ---CPDVLSHWQNRFKYIMVDEYQ 280

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q++++  L E              L  VGDE QSIY F GA  + +L  +     
Sbjct: 281 DTNAAQYKLVSLLAE----------GSGNLCVVGDEDQSIYRFRGATIENILSFEEQFG- 329

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RSTA IL   + V +     +  +                  
Sbjct: 330 --------AEVIKLEQNYRSTATILKAANAVIANNTQHKDKN------------------ 363

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW  +      + +              + S+    A  I   I + +         
Sbjct: 364 ---LWSDLGDGDKIRMD--------------RFSTEQEEAMFITERILDGVKQGK----- 401

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  D ++L R    +  +            I           +   IKD++A   
Sbjct: 402 -----KYADHVILYRNNAQSRTVETTL----AKSGIPYKIIGGVRFYERKEIKDIIAYLC 452

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISK 480
            + +  D++ F  ++  P+       + ++         +  + + +       +     
Sbjct: 453 VLNNNYDEVRFGRIVNEPVRGIGAATLDELNRVVSGMGISYVQAMCESDSLPSLSRKAKG 512

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR 538
              + +   EL       S       IL     R+    +   G   ++ ++E  +  + 
Sbjct: 513 LVPLGETFSELSQHTDDISDGSLIDDILDRFGYREAMQRQGLEGEVRLENINELKSNMIT 572

Query: 539 NEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +    + L E + ++            A+ ++  +MT+H+AKGLE   VF+V     +
Sbjct: 573 FAKENEGAGLSEFLEQVALVSDMDSF--EADDDKAVLMTMHSAKGLEFDTVFVVGAEENI 630

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                              EE  RL YV +TR
Sbjct: 631 FPG----------------------------------YRSQFDPMEIEEERRLAYVAITR 656

Query: 658 ASDQLIICKHS 668
           A   L      
Sbjct: 657 AKRHLYFTCAK 667


>gi|16767221|ref|NP_462836.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167993889|ref|ZP_02574982.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197263905|ref|ZP_03163979.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|17865684|sp|Q05311|UVRD_SALTY RecName: Full=DNA helicase II
 gi|6960251|gb|AAF33441.1| 98% identity with E. coli DNA helicase (UVRD) (SP:P03018); contains
           similarity to Pfam family PF00580 (UvrD/REP helicase),
           score=812.9, E=1.2e-240, N=1 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16422515|gb|AAL22795.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197242160|gb|EDY24780.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205328129|gb|EDZ14893.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249074|emb|CBG26935.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996230|gb|ACY91115.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160466|emb|CBW19996.1| DNA helicase II [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915069|dbj|BAJ39043.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225469|gb|EFX50526.1| ATP-dependent DNA helicase UvrD/PcrA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132298|gb|ADX19728.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 720

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQVCRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|313809680|gb|EFS47414.1| UvrD/REP helicase [Propionibacterium acnes HL083PA1]
          Length = 1072

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 149/995 (14%), Positives = 298/995 (29%), Gaps = 122/995 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         I    +  +       L KA           I +    L+    +   +
Sbjct: 122  AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K +   +   +   L    K+  D +  I    +     +  L  +       A Y+ 
Sbjct: 182  PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+ +L
Sbjct: 234  LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
               F    + H     + AVGD  Q+IY + GA    +L   R    +    G    ++ 
Sbjct: 291  ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  + R    I+   +               ++  +R   S   + G     +       
Sbjct: 345  LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
             Q     E       ++          +  A  +       TI         +  D  +L
Sbjct: 391  GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            VR+  D   +            + V   +   L     I  ++A  R ++ ++DD +   
Sbjct: 443  VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498

Query: 440  MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483
            +L +P    S DD+  +  +                      + + + +    G  + Q 
Sbjct: 499  LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558

Query: 484  VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             +K +   I      +  SP D    I           +   +      D LD   N   
Sbjct: 559  ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618

Query: 538  RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               ++    ++  +++ L         + RA + + + V + TVH AKGLE P+V + D 
Sbjct: 619  EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678

Query: 594  GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
               VF              ++PS        I  P S S  +  + +    + S   E  
Sbjct: 679  AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737

Query: 649  RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA ++L++  H      +       + D++ D           +  + I   
Sbjct: 738  RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797

Query: 708  -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                 +         +    + +  +K       +  ++  P +
Sbjct: 798  TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801
               ++   L+ +    +           ++    G   H+         + I      + 
Sbjct: 858  LTTSQIVRLHANPQAFQDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917

Query: 802  KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                    T+ A        +   L S+ +  E      A      + ++V         
Sbjct: 918  AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971

Query: 861  DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              ++ GR+D +     +     + ++KT      +          QLSIY      +   
Sbjct: 972  QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                +  +  +V   +             A I T 
Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|269103724|ref|ZP_06156421.1| ATP-dependent DNA helicase UvrD/PcrA [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163622|gb|EEZ42118.1| ATP-dependent DNA helicase UvrD/PcrA [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 686

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/569 (17%), Positives = 189/569 (33%), Gaps = 116/569 (20%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +    +++           + + A Y+EA  +  ++DF +L++   +L++      +IR 
Sbjct: 115 EGLRPHQIETFNDPVEQTWQRIYAAYQEACDRAGLVDFAELLLRAFELVRDN---KFIRE 171

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                  HIL+DE QDT+ IQ+  +R +                +  VGD+ QSIY + G
Sbjct: 172 HYQARFKHILVDEFQDTNSIQFAWLRLMAG----------PDCHVMIVGDDDQSIYGWRG 221

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + + R  R               I L  ++RST +IL   +++ +      G +   
Sbjct: 222 AKVENISRFLREFH--------DAKSIFLEQNYRSTGNILKAANELIANNNERMGKN--- 270

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                             LW           +  + S  S F+ L +       AR    
Sbjct: 271 ------------------LW-------TDGADGDRISLYSAFNELDE-------ARFAVG 298

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I                     ++  L R    + ++            +         
Sbjct: 299 KIKEWRDQGGTL----------NEVAFLYRSNAQSRVLEEAL----IQAGMPYRIYGGMR 344

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470
             +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R  + T+++  
Sbjct: 345 FFERQEIKDALSYLRLISNRNDDTAFERVVNTPTRGIGDRTLETIRLAARDRSMTMWQAS 404

Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
                    A    +  +  I+ +  L       + +     ++     R  +    G +
Sbjct: 405 IALLDDQVLAGRAANALRRFIELVDALEDDTAELALYQQTDDVIRNSGLRAMYEQEKGEK 464

Query: 525 VI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
                + L+E +  T + E       +  L + L        +       + V++MT+H+
Sbjct: 465 AQARIENLEELVTATRQFEIPEEAQEMTHLAAFLSHAALEAGEGQADDFEDAVQLMTMHS 524

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF+V     +F                                         
Sbjct: 525 AKGLEFPLVFMVGMEEGMFPSSRTT----------------------------------E 550

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHS 668
           +    EE  RL YVGMTRA  +L +    
Sbjct: 551 EVGRLEEERRLCYVGMTRAMQKLYLTHAE 579


>gi|312972963|ref|ZP_07787136.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 1827-70]
 gi|310332905|gb|EFQ00119.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 1827-70]
          Length = 854

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 122/853 (14%), Positives = 270/853 (31%), Gaps = 129/853 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +       K++   L F+D++   +  L+  +    +   I       +IDE QD
Sbjct: 4   RALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQD 62

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T   Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +      
Sbjct: 63  TDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 114

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            T          L  ++RS   ++  V+K+FS  ++A    E     ++           
Sbjct: 115 YT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA---- 160

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362
                 +      +  P  + W    +S       S +A+  A  I + +         +
Sbjct: 161 ------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 214

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
            +    R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++
Sbjct: 215 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEML 271

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            L + +++ E + +    L + +   +  DI  +           E+           ++
Sbjct: 272 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDVVVEEFDGYR 323

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539
            + +    +  +    S  +    +L    G ++            + E L      L +
Sbjct: 324 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLES 377

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E      L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +    
Sbjct: 378 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 437

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                      ++    N   + +   +     E  RLLYV +TR+ 
Sbjct: 438 EQAFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 484

Query: 660 DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
               L +        +KK +       +       E      L   I         W T 
Sbjct: 485 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 544

Query: 718 ------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPST 761
                   +   +   E   + +          +              D+     ++ + 
Sbjct: 545 QTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 604

Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
           + +  +    +     +  + G  +H L + +         N++          + ++  
Sbjct: 605 VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREKLELGG--FESQWE 661

Query: 822 KNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK---------------- 859
             L   IT +L+ P+      ++   + +   E+     I+ P                 
Sbjct: 662 PVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS 721

Query: 860 ----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTH 900
                        ++ G ID +   +   ++ +YK++                    + +
Sbjct: 722 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 781

Query: 901 IAQLSIYEKILKD 913
             Q  +Y   L  
Sbjct: 782 DLQYQLYTLALHR 794


>gi|168763938|ref|ZP_02788945.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501]
 gi|217325077|ref|ZP_03441161.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588]
 gi|189365967|gb|EDU84383.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501]
 gi|217321298|gb|EEC29722.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588]
          Length = 720

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMLLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|260592441|ref|ZP_05857899.1| ATP-dependent DNA helicase [Prevotella veroralis F0319]
 gi|260535487|gb|EEX18104.1| ATP-dependent DNA helicase [Prevotella veroralis F0319]
          Length = 843

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 105/640 (16%), Positives = 195/640 (30%), Gaps = 120/640 (18%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTL-ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           +   +  +++  I   +        +    A +     +   YE   ++   +DF+D+++
Sbjct: 146 VHNVISNAKNHLITASEYAEDRAAIERDRSAKMPAISMIYKAYEARCRQANAMDFDDILL 205

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            T  L +       +R +  ++  +IL+DE QDT+  Q  +I  L E            R
Sbjct: 206 YTYILFRDH---QEVRNRYGEQFEYILVDEYQDTNYAQVSIISQLAE----------IHR 252

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIYSF GA    +L  K            +  + +L  ++RST  I+   
Sbjct: 253 RVCVVGDDYQSIYSFRGANIDNILDFKNKFD--------EAKLFKLERNYRSTQLIVQAA 304

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +    E            I          G   L++   S  +               
Sbjct: 305 NSLMKHNE----------RQIPKNVYSKEDEGDKVLYKPCYSDRE--------------- 339

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                      A  +A  +  +                  +  +L R    +       R
Sbjct: 340 ----------EAMVVAKELKRI---------KHMDDCDYSNFAILYRTNAQSRAFEDEFR 380

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
               +  I               IKD++A  R + +  D+ +F  ++  P     +  + 
Sbjct: 381 ----NQGIPYKIIGGLSFYQRKEIKDIIAYFRLVTNPNDEEAFRRIINYPTRGIGDATVK 436

Query: 455 K-ICTQRHETETVYEYIQKFANC-------GISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
           K I   +    +++E I              ++K       I E I        +     
Sbjct: 437 KIIDCAQMNGVSLWETIMDPVTHGLNVNKGTMTKLFTFRALISEFIKDVAQTDAYTLGCK 496

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQE---LISELEQYPP 559
           I+     +   +     E     + L EF++      + N     +E   L   L++   
Sbjct: 497 IIEESGIKADLMLGSEPEDLARRENLAEFMSALQGFVDTNREEGREENVYLTDYLQEVAL 556

Query: 560 TIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                   +   +V +MT+H AKGLE P VF+V     +F                    
Sbjct: 557 YTDADKEDDNAPKVTLMTIHAAKGLEFPTVFVVGLEENIFPSPMSSDS------------ 604

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                 K   EE  RLLYV +TRA    I+    N         
Sbjct: 605 ----------------------KRGLEEERRLLYVAITRAERHCILTNAKNRFRFGTMQI 642

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +    + D   +   V+             ++++   + 
Sbjct: 643 DSPSRFLRDIDASLLHVEDSASGLLGENRRRLSWDEDANE 682


>gi|187929519|ref|YP_001900006.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|309781705|ref|ZP_07676438.1| DNA helicase II [Ralstonia sp. 5_7_47FAA]
 gi|187726409|gb|ACD27574.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|308919346|gb|EFP65010.1| DNA helicase II [Ralstonia sp. 5_7_47FAA]
          Length = 786

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 113/715 (15%), Positives = 222/715 (31%), Gaps = 153/715 (21%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W +   +VS                +  + Q +   +        
Sbjct: 28  GAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTNKAAKEMTARLQAMLPINTRAMWIGT 87

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  L +  L    +     +     +   +   +K  LK              Q      
Sbjct: 88  FHGLCNRLLRAHYRDAGLPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPPKNVQYFINGA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++       +           L A Y+   ++  V+DF +L++   +LL+  D    IR
Sbjct: 148 KEQGLRAGDLEIANEYDRRMADLYAAYDAQCQREGVVDFAELLLRCYELLRYNDA---IR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               +   HIL+DE QDT+ +Q+  ++ L      G     +P  +FAVGD+ QSIY+F 
Sbjct: 205 AHYQRRFKHILVDEFQDTNKLQYAWLKILAGLGEPGV----TPNAIFAVGDDDQSIYAFR 260

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    ++  +R  +            I+L  ++RS   IL   + + S      G +  
Sbjct: 261 GANVGNMVDFEREFRVE--------HRIKLEQNYRSHGHILDTANHLISHNTRRLGKNLR 312

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V++++      +                          A  I 
Sbjct: 313 TD---------AGHGEPVRVYQAATDGQE--------------------------AGWIV 337

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I + I T           +   +I +L R    + +I            I        
Sbjct: 338 DEIRDRIATG----------MSRSEIAILYRSNAQSRVIEHAL----FSAGIPYKVYGGL 383

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469
              +   IK  +A  + + + ++D +F  ++  P        + ++    R    ++   
Sbjct: 384 RFFERAEIKHALAYLQLLENPDNDAAFGRVVNFPARGVGARSLEQLQDAARLYGISLAAA 443

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528
           +        +K    ++ I ++    +  +  +    ++ A      +     G + I+ 
Sbjct: 444 VPYLTGAAGTKLSAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQGEKEGQDRIEN 503

Query: 529 LDEFLNFTLRNEQNS-------------------------------------YSSLQELI 551
           L E +                                                + +  L+
Sbjct: 504 LQELVTAAQAFVAEEGYGVDAIATALPVRHDAMLRIEGGEIDTASELVTDETPAEMTPLV 563

Query: 552 SELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + L             A  + V++MTVH AKGLE  VVF+      +F H++        
Sbjct: 564 AFLTHASLEAGDNQAQAGQDAVQMMTVHAAKGLEFHVVFITGLEEGLFPHENS------- 616

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                       ++K   EE  RL+YV +TRA ++L + 
Sbjct: 617 ---------------------------QMEKDGLEEERRLMYVAITRARERLYLS 644


>gi|289761084|ref|ZP_06520462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM
           1503]
 gi|289708590|gb|EFD72606.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM
           1503]
          Length = 702

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 110/724 (15%), Positives = 202/724 (27%), Gaps = 136/724 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +      +              +            + L         ++   
Sbjct: 79  AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + +          +    
Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L        N    P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +     +                      
Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +  +  +         I           +   I+D++A  R 
Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478
           + +  D +S   +L +P     +     +     +      + +   A            
Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 ++   EL          +    +L     R++  +    +    +D L+E ++ 
Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542

Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581
                           +         L   LE+            H    V +MT+HTAK
Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE PVVF+      +F H                                         
Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPT--------------------------------- 629

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
               E  RL YVG+TRA  +L + +    S+   ++ +    +   +     R+   +  
Sbjct: 630 -ELSEERRLAYVGITRARQRLYVSRAIVRSSWGPADAQPGVAVSAGNPAGAHRLAAHRPE 688

Query: 702 NSIN 705
             + 
Sbjct: 689 AVVQ 692


>gi|62290306|ref|YP_222099.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941]
 gi|82700230|ref|YP_414804.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308]
 gi|189024540|ref|YP_001935308.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237815813|ref|ZP_04594810.1| DNA helicase II [Brucella abortus str. 2308 A]
 gi|254730639|ref|ZP_05189217.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
 gi|260546849|ref|ZP_05822588.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260758354|ref|ZP_05870702.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
 gi|62196438|gb|AAX74738.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941]
 gi|82616331|emb|CAJ11388.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella
           melitensis biovar Abortus 2308]
 gi|189020112|gb|ACD72834.1| UvrD/REP helicase [Brucella abortus S19]
 gi|237789111|gb|EEP63322.1| DNA helicase II [Brucella abortus str. 2308 A]
 gi|260095899|gb|EEW79776.1| UvrD/REP helicase [Brucella abortus NCTC 8038]
 gi|260668672|gb|EEX55612.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292]
          Length = 858

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 195/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAELDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V I+T+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIITLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|126030797|pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex
 gi|126030798|pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex
 gi|126030803|pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex
 gi|126030804|pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex
 gi|126030807|pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 gi|126030808|pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 gi|126030811|pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
 gi|126030812|pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
          Length = 680

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 187/583 (32%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I++
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIVN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|261380715|ref|ZP_05985288.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703]
 gi|284796427|gb|EFC51774.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703]
          Length = 666

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/611 (17%), Positives = 205/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T A         + A Y+E  +    +DF+DLI 
Sbjct: 126 KEAIFKAQHQISLWKNDLKTPEDVVQTAANVWEQQTARVYASYQETLQSYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV             S              G  ++ + V  Q++               
Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 317

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                      A  +   I    ++G D           Q  D  VL R      +    
Sbjct: 318 --------QHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      ++    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 361 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         +      Q  +  I      A+     +   
Sbjct: 417 LGKLNTYAHEHECSLYEAAQTEEALALLNHTNRQHLQAFMDMIESYRAKAETSEAGELIH 476

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + +   +  R  +    ++ EL   +       
Sbjct: 477 NLLREIDYENHLLANEEGKAGEIKWRNVTDLTGWLERKGEQDGKNIIELAQTIALMTLLE 536

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V++ T+H +KGLE P VFLV     +  H                     
Sbjct: 537 GK-SEEEIDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 575

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCLKRKKQGTWQFPEP 620

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 621 SRFIDEMPQED 631


>gi|145627832|ref|ZP_01783633.1| DNA helicase II [Haemophilus influenzae 22.1-21]
 gi|145639293|ref|ZP_01794899.1| DNA helicase II [Haemophilus influenzae PittII]
 gi|144979607|gb|EDJ89266.1| DNA helicase II [Haemophilus influenzae 22.1-21]
 gi|145271596|gb|EDK11507.1| DNA helicase II [Haemophilus influenzae PittII]
          Length = 726

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYKIYQDTCDRAGLVDFAELLIRAYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 276 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 526 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTISYAESRR 622


>gi|260062807|ref|YP_003195887.1| putative helicase [Robiginitalea biformata HTCC2501]
 gi|88784375|gb|EAR15545.1| putative helicase [Robiginitalea biformata HTCC2501]
          Length = 771

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 111/721 (15%), Positives = 224/721 (31%), Gaps = 123/721 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEA 140
           K +   +   K   +++++   ++  I ++  F   ++ ++   +       +  HY + 
Sbjct: 124 KEMGLDKDVYKYKQIQQRISSYKNSLITVKAYFQNPELMEADAMAKRPRLGEIYRHYVDR 183

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
             K   +DF+DL++ TN+LL +      + +K  +   +IL+DE QDT+  Q+ ++R+L 
Sbjct: 184 CFKAGAMDFDDLLLRTNELLNRFPE---VLHKYQERFRYILVDEYQDTNHSQYLIVRALA 240

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           + F          + +  VGD+ QSIYSF GA    +L  +R             ++  L
Sbjct: 241 DRF----------QNICVVGDDAQSIYSFRGANITNILNFQRDYD--------DVAVYRL 282

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST +I+   + V +  +N                               V    +
Sbjct: 283 EQNYRSTKNIVGAANSVIARNKNQLEK---------------------------VVWTSN 315

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P+ +   S  D+           R +A +I         F    +  +      VL 
Sbjct: 316 EEGPRIKLHRSPTDAEEG--------RFVASSI---------FEEKMRHQMPNGHFAVLY 358

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +  I    R       I               IKD++A  R I++  D+ +   +
Sbjct: 359 RTNSQSRAIEDALR----KRDIPYRIYGGLSFYQRKEIKDVLAYLRLIVNPGDEEALKRV 414

Query: 441 LKSPLFNFSEDDIFKICTQR--------HETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           +  P     +  + K+               E +             K       I    
Sbjct: 415 VNFPTRGIGQTTMDKLTVAANASGRTIFEHIENLESEPLGLNRGTRGKLSDFATMIRSFQ 474

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN---EQNSYSS 546
            + Q          +        +F      E    ++ ++E LN        ++    +
Sbjct: 475 VLNQSADAFTLAEHVAKKSGLLLEFKKDGTPEGIARMENIEELLNGIKDFVEGQKEVADA 534

Query: 547 LQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             +L   LE             + + V +MT+H AKGLE P V++V     +F       
Sbjct: 535 KGDLSEFLEDVALATDMDKDTGDEDRVALMTIHLAKGLEFPYVYIVGMEEDLFPS----- 589

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                         +    +S  EE  RL YV +TRA  Q  + 
Sbjct: 590 -----------------------------AMSMNTRSELEEERRLFYVALTRAEKQAYLT 620

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              N     K          +     +  ++ +   ++      I  +      ++   +
Sbjct: 621 YTQNRYRWGKLIDAEPSR--FIEEIEESYIENLTPVDNYRYRPLIDSDIFGDVDKSRLRQ 678

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           ++              +    ++    +      S            +         G +
Sbjct: 679 KKPVAGTPPSRTGPKPEQLRRLRKLKPDIASPKGSDTVIADLQEGTRVDHSRFGA--GTV 736

Query: 786 I 786
           +
Sbjct: 737 L 737


>gi|299066163|emb|CBJ37346.1| DNA helicase II [Ralstonia solanacearum CMR15]
          Length = 794

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 113/730 (15%), Positives = 221/730 (30%), Gaps = 159/730 (21%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K  Q      +++       +           L A Y+   ++  V+DF +L++   +LL
Sbjct: 138 KSVQYFINGAKEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVDFSELLLRCYELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  D    IR    +   HIL+DE QDT+ +Q+  ++ L      G     +P  +FAVG
Sbjct: 198 RYNDA---IRVHYQRRFKHILVDEFQDTNKLQYAWLKILAGLGEAGV----TPNAIFAVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    ++  +R  +            I+L  ++RS  +IL   + + + 
Sbjct: 251 DDDQSIYAFRGANVGNMVDFEREFR--------VAHRIKLEQNYRSHGNILDTANHLIAH 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +  +           G    V+++       +                     
Sbjct: 303 NTRRLGKNLRTD---------AGHGEPVRVYPSATDGQE--------------------- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   I   I + T             +I +L R    + +I           
Sbjct: 333 -----AGWIVEEIRERIASGTA----------RSEIAILYRSNAQSRVIEHAL----FSV 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   IK  +A  + + + ++D +F  ++  P        + ++    
Sbjct: 374 GIPYKVYGGLRFFERAEIKHALAYLQLLENADNDAAFGRVVNFPARGVGARSLEQLQDAA 433

Query: 461 H-ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                ++   +        +K    ++ I ++    +  +  +    ++ A      +  
Sbjct: 434 KLYGVSLAASVPYLTGAAGTKLAAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQG 493

Query: 520 RF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549
              G + I+ L E +             +                               
Sbjct: 494 EKEGLDRIENLQELVTAAQAFVAEEGYGVDAIATALPMRHDAMLRIEGGETDSDAVTELV 553

Query: 550 ----------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                     L++ L             A  + V++MTVH AKGLE  VVF+      +F
Sbjct: 554 ADETPTEMTPLVAFLTHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFHVVFITGLEEGLF 613

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H++                                          EE  RL+YV +TRA
Sbjct: 614 PHENSL----------------------------------QDTDGLEEERRLMYVAITRA 639

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            ++L +                    V           +          +W+    + + 
Sbjct: 640 RERLYLS--------------FAQSRVLHGQIRYHIRSRFFDELPEATLKWLTPPQAGY- 684

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
              +P  R +  +    +    ++ F   +   NE Y   P+     G T  ++  +   
Sbjct: 685 ---SPTRRAQGGQGGQGDSAWGREWFKRPERGDNEAYTGRPTGGMDTGNTYADTKRAAGT 741

Query: 779 TFNRG-LIIH 787
            F  G  + H
Sbjct: 742 GFRVGQSVFH 751


>gi|54310566|ref|YP_131586.1| DNA-dependent helicase II [Photobacterium profundum SS9]
 gi|46915009|emb|CAG21784.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           SS9]
          Length = 724

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 101/551 (18%), Positives = 181/551 (32%), Gaps = 119/551 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++   +L++       IR        HIL+DE QDT+ I
Sbjct: 172 RIYTAYQEACDRAGLVDFAELLLRAFELVRDN---KHIREHYQARFKHILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + R  R         
Sbjct: 229 QFAWLRLMAG----------VDCNVMIVGDDDQSIYGWRGAQVENIQRFLRDF------- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               S I L  ++RST +IL   +++ +      G                       LW
Sbjct: 272 -TNASSIFLEQNYRSTGNILNAANELIANNNERMGKK---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  S  S F+ L +       AR     I               +  
Sbjct: 310 -------TDGEDGELISLYSAFNELDE-------ARFAVGKIKEWRNE---------KGG 346

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D   L R    + ++            +           +   +KD +A  R + ++
Sbjct: 347 SLSDTAFLYRSNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEVKDSLAYLRLMANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD SF  ++ +P     +  +  I    R  + T+++                +  +  
Sbjct: 403 NDDASFERVVNTPTRGLGDRTLETIRLAARDRSVTMWQASVSLLEEQVLAGRAANSLRRF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-- 539
           I+ ++ L    +          ++     R  +    G +     + L+E +  T +   
Sbjct: 463 IELVNALEDDTRDLPLFQQTDDVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFVV 522

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    + L   +S         +       + V++MT+H+AKGLE P+VF+V     +
Sbjct: 523 PEEAEEMTPLAAFLSHAALEAGEGQADDFE--DAVQLMTMHSAKGLEFPIVFMVGVEEGM 580

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                         +    EE  RL YVGMTR
Sbjct: 581 FPSSRTT----------------------------------EEVGRLEEERRLCYVGMTR 606

Query: 658 ASDQLIICKHS 668
           A  +L I    
Sbjct: 607 AMKKLYITYAE 617


>gi|313891437|ref|ZP_07825053.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII
           345-E]
 gi|313120212|gb|EFR43388.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII
           345-E]
          Length = 1283

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 131/670 (19%), Positives = 226/670 (33%), Gaps = 53/670 (7%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL--------TQKFTPQK-NIIT 86
             ++     T+ ++   +      +  +E    ++            TQ   P+   I  
Sbjct: 249 EKALMNYTETLSEELAAISILCNAKTWKEWHETINEITFRSLKPVKKTQAENPEALEIYK 308

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKK 143
             I     ++K+KL +    +  I +        K   +      +       Y + K+K
Sbjct: 309 TTIQNARQNIKKKLTEISTMYFAIDEARWIEEMKKTCPTIEILSKITTEFYNEYLKRKQK 368

Query: 144 NCVLDFEDLIINTNDLL---------KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
              ++F D      ++L         K+    +    ++ ++   I+IDE QDT+ IQ  
Sbjct: 369 ESTMEFSDTTHYALNILIKKHKLENGKQEIELSEAAKELQKKYKEIMIDEYQDTNSIQEL 428

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +   +           S+ R LF VGD KQSIY F  A+    L +     K        
Sbjct: 429 ITTLI-----------SNGRNLFMVGDLKQSIYRFRMADHTIFLDKYSTFTKDENAKN-- 475

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR-IGQVGTVQLWEQ 313
             +I L  +FRS   +L+ ++ +F    N + L           + R         +  +
Sbjct: 476 -RLIVLNKNFRSDHALLSSINYIFRQIMNPEILELSYNDDEALHAGRLQETPPETYIGNK 534

Query: 314 VVSQHDSQCNPQQESWTSYFDSL-PQESSASILARRIAYTISNMIGTDTIF--SNGKKRV 370
                       +E      D    Q  +     R IA  I N+I         +G  R 
Sbjct: 535 EHGSVSINIINNKELEEKISDQDKSQIENGETEIRYIAEEIKNIINNKLTVTNPDGTYRK 594

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KDI +L R          L   + N+Y I     +     D    K L AL   I +
Sbjct: 595 AEYKDIAILARS---LSKKASLFLKIFNEYNIPAATQNDDNFLDATETKILRALLEIIDN 651

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQKFANCGISKFQHV 484
              DL  V +L+S   +  E +  KI   ++E       ET+    +  +     K +  
Sbjct: 652 PYRDLPLVAVLRSYFADMDETEFAKIAIAKNELKTQTWWETLPLTEKYVSEKTFEKIKKF 711

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543
           I+  +     +   S  +    IL              G      ++ F    L  ++  
Sbjct: 712 IEKYNNWKDYSLNNSISELLQHILEETGYMTYISGLAEGTFRKSHIENFYKLALDFDEKE 771

Query: 544 YSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            + L   +  LE+     +           N V+IMT+H +KGLE P+VFLV+       
Sbjct: 772 KNGLYRFLYMLEKLTEEGRTPEGKSIKTETNAVQIMTIHKSKGLEYPIVFLVNCNKTFNE 831

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             +        ++            +           +   +S + E  RLLYV MTRA 
Sbjct: 832 TDYRTSYITHKTMGLGLHYYSKEHTAHWPTLYWYATKEDSIRSNKAEEARLLYVAMTRAK 891

Query: 660 DQLIICKHSN 669
           D+L I   + 
Sbjct: 892 DKLYITGTTK 901



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 93/291 (31%), Gaps = 24/291 (8%)

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK--DEWIAYEWSTHHPENTPL 724
            ++ T+ ++ + + T  + +      ++     +L   +        A +          +
Sbjct: 994  YAQTNEQQNTKENTEENALEFFKPENDTTVPERLNRQLTWTYPYPQATKTPVKLTATQAV 1053

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
              +   +    E+     +     ++  E    N    + + +             + G 
Sbjct: 1054 AMKNLEENRWTEENENDTVLVTEIDETKENETTNEIPPEFRAEPEFMQESKPITGTSYGT 1113

Query: 785  IIHKLLQVIFTLP---EHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENP 835
            ++HK ++++       E +    IT          +  ++   K   + +  I   +++P
Sbjct: 1114 LMHKTMELLPFEKLENETEITTEITKLKNNNSITDEEYEILTQKGKHSPVTKIMTFIKSP 1173

Query: 836  MMTTAMSCDS-YSEVSVSGKINC--------PKKDIIISGRIDQISISQQNIFIFEYKTH 886
            +     +      E+  S  +            + I + G ID +  +   I I +YKT 
Sbjct: 1174 LGNELKNASEIKKEMPFSILLPANDFYKNCEKGEKIFMQGIIDCMFETDGKITIIDYKTD 1233

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFIIP 936
                +  E +   +  QL IY          K +  + I+  S  K   +P
Sbjct: 1234 KT--KNEEKLVNHYKTQLQIYANAASKIL-KKEIKNIYIWSFSIGKAIKVP 1281


>gi|260911425|ref|ZP_05918016.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634472|gb|EEX52571.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 823

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/667 (14%), Positives = 199/667 (29%), Gaps = 130/667 (19%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   +   A       + A Y +  +    +DF+DL++ T  L  + +    +R  
Sbjct: 162 ELMERDARERMPAVHK----VYATYMQRCRLANAMDFDDLLLLTYQLFAEHED---VRKI 214

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   ++L+DE QDT+ +Q  ++  LT++           R +  VGD+ QSIY F GA
Sbjct: 215 YAERFQYVLVDEYQDTNHVQQLIVTQLTKE----------HRRICVVGDDAQSIYGFRGA 264

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +   +L  ++   +          + +L  ++RST +I+   + + S  +        S 
Sbjct: 265 DIDNILDFQQQFPE--------ARLFKLEQNYRSTQNIVKAANSLISHNQRQIKKDVYSQ 316

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                          + L      + +                          A  +   
Sbjct: 317 N---------DLGEKITLKPVYSDKEE--------------------------ALVVCND 341

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  ++ ++           Q  D  +L R    +       R       I          
Sbjct: 342 IKRIMKSEEG---------QYSDFAILYRTNSQSRSFEDELR----RQSIPYRIYGGMSF 388

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQ 471
                IKD++A  R +++ +D+ +F  ++  P     +  + K+     + E + ++ + 
Sbjct: 389 YQRKEIKDIIAYFRLVMNVDDEEAFKRIVNYPARGIGDTTLAKVTMAAQQNEVSCWQVLA 448

Query: 472 KFANCG-------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
             A+          +K Q     ++  +        ++    I+     +    +    E
Sbjct: 449 DPAHYHLDVNKGTWTKLQKFRDMVNGFVAEVATLDAYELGIKIIKESGIQADLYATSDTE 508

Query: 525 ---VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMT 576
                + L E +           +        L + L++           +    V +MT
Sbjct: 509 SLSRQENLQELVGGLKEFVDIRREEGNEDEVFLGNYLQEVSLLSDLDSEGDEESRVVLMT 568

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           VH+AKGLE P VF+V     +F          +                           
Sbjct: 569 VHSAKGLEFPTVFVVGLEENIFPSPRSTDSPRLLEEERRLL------------------- 609

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND---- 692
                          YV +TRA    I+    N     +    T    + D   N     
Sbjct: 610 ---------------YVAITRAEKHCILTCAKNRYRFGRMEFDTPSRFISDIDPNLLNVQ 654

Query: 693 ---ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
                    +    +  DE  +  +          E+     + ++ + +  +  +    
Sbjct: 655 NPMAEYSTPRFERRLQSDEQPSARYYGGRDTAGTYEKRSANPRFLNSRPVASQFMADPIP 714

Query: 750 DINEPYI 756
           +   P  
Sbjct: 715 NPAHPRK 721


>gi|145637060|ref|ZP_01792723.1| DNA helicase II [Haemophilus influenzae PittHH]
 gi|145269714|gb|EDK09654.1| DNA helicase II [Haemophilus influenzae PittHH]
          Length = 726

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 193/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYKIYQDTCDRAGLVDFAELLIRAYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 276 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             + F+ L +       A+ +A  I + +               
Sbjct: 313 ------TEGEKGDPVGIYAAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 526 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTISYAESRR 622


>gi|167750343|ref|ZP_02422470.1| hypothetical protein EUBSIR_01317 [Eubacterium siraeum DSM 15702]
 gi|167656703|gb|EDS00833.1| hypothetical protein EUBSIR_01317 [Eubacterium siraeum DSM 15702]
          Length = 792

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 92/551 (16%), Positives = 173/551 (31%), Gaps = 116/551 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L+ AK +   Y+   +    LDF+D+I+ T  L         +         +I++DE Q
Sbjct: 224 LSTAKTIYTDYQARLEAANALDFDDIIMLTVKLFAH---CPDVLSHWQNRFRYIMVDEYQ 280

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q++++  L E              L  VGDE QSIY F GA  + +L  +     
Sbjct: 281 DTNAAQYKLVSLLAE----------GSGNLCVVGDEDQSIYRFRGATIENILSFEEQFG- 329

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RSTA IL   + V +     +  +                  
Sbjct: 330 --------AEVIKLEQNYRSTATILKAANAVIANNTQHKDKN------------------ 363

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW  +      + +              + S+    A  I   I + +         
Sbjct: 364 ---LWSDLGDGDKIRMD--------------RFSTEQEEAMFITERILDGVKQGK----- 401

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  D ++L R    +  +            I           +   IKD++A   
Sbjct: 402 -----KYADHVILYRNNAQSRTVETTL----AKSGIPYKIIGGVRFYERKEIKDIIAYLC 452

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISK 480
            + +  D++ F  ++  P+       + ++         +  + + +       +     
Sbjct: 453 VLNNNYDEVRFGRIVNEPVRGIGAATLDELNRVVSGMGISYVQAMCESDSLPSLSRKAKV 512

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR 538
              + +   EL       S       IL     R+    +   G   ++ ++E  +  + 
Sbjct: 513 LVPLGETFSELSQHTDDISDGSLIDDILDRFGYREAMQRQGLEGEVRLENINELKSNMIT 572

Query: 539 NEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +    + L E + ++            A+ ++  +MT+H+AKGLE   VF+V     +
Sbjct: 573 FAKENEGAGLSEFLEQVALVSDMDSF--EADDDKAVLMTMHSAKGLEFDTVFVVGAEENI 630

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                              EE  RL YV +TR
Sbjct: 631 FPG----------------------------------YRSQFDPMEIEEERRLAYVAITR 656

Query: 658 ASDQLIICKHS 668
           A   L      
Sbjct: 657 AKRHLYFTCAK 667


>gi|238783717|ref|ZP_04627737.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia bercovieri ATCC 43970]
 gi|238715430|gb|EEQ07422.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia bercovieri ATCC 43970]
          Length = 1148

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 131/977 (13%), Positives = 298/977 (30%), Gaps = 144/977 (14%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
            + I   +  L         +  +L   +G       A+ L    +               
Sbjct: 169  QQIIVQIDALKTQWCEAAPELEALISSSGVDKRSYSARYLPSWLEKVGAWAEQETTDYQL 228

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
              +    +++I++++  K +          Q       DR     +    L        +
Sbjct: 229  PKELEKFRQSILSEKTKKGA--------APQHALFGAIDRIFEQPLTLRDLILARAISEI 280

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                ++ K++   L F+DL+   +  L++      +   I       +IDE QDT   Q+
Sbjct: 281  RTSVQQEKRQRAELGFDDLLSKLDVALQQPG-GELLAQSIRSRYPVAMIDEFQDTDPQQY 339

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +  +L                L  +GD KQ+IY+F GA+    +R +       T    
Sbjct: 340  RIFHTLYSG--------QKECGLLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT---- 387

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RS+  ++  V+++FS+ +      +     +             +   +
Sbjct: 388  ------LETNWRSSFPMVQSVNRLFSLVDVPFLFEQIPFINVS----------AAEKNSR 431

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKK 368
            +  +   +  P    W    + +       ++A++ A  I + +         + +    
Sbjct: 432  LSFEIKGKKQPAISFWLQPGEGVGVSEYQQLMAQQCAAQIRDWLTAGQNGLAQLVTVDGS 491

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R +QA DI +LVR R +  L+      L      SV  ++R  + D    KDL+ L + +
Sbjct: 492  RPVQASDITILVRSRAEAALVRDALSAL---AIPSVYLSNRDSVFDTAEAKDLLWLLQAV 548

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L+ E + +    + + +       +  +       + +      +        + V+  +
Sbjct: 549  LAPEQERALRSAMATGVLGLDAKMLDALNHDERAWDALVAEFDGYRQHWQR--RGVLPML 606

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYS 545
             E++              +L    G ++            L E L      L +E     
Sbjct: 607  REIMAHRH------LAENLLATPGGERRLTDVL------HLGELLQEAASQLDSEHALIR 654

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             L + I++        +    ++ + V+++T+H +KGLE P+V+L   G+     + +  
Sbjct: 655  WLAQQIAQPNHQSDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVGNFRQQQEVLYH 714

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII- 664
              +                     N  ++     ++    E  RLLYV +TRA     + 
Sbjct: 715  DRLSFEAL-------------LDLNADAESQALAEEERLAEDLRLLYVALTRAVYHCSVG 761

Query: 665  CKHSNTSNEKKSNQRTWYD----------MVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                     KK  +   +           +  D+ +  +++ ++      +    +A   
Sbjct: 762  IAPLIKGGRKKQGESDMHRSALGYLVQQGLAGDAQYLADKLAELTAVTDGDISVSLAERP 821

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKK-----------------LFSPIKNDINEPYIL 757
                 +  P        +  + Q                         P+   + E    
Sbjct: 822  DDTPWQPQPEILPALAARQFNRQVQDYWRVTSYSGLQQHGSGKGGASQPLNVPLQELLPR 881

Query: 758  NPSTIDTKGKTNLES---LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKNA 813
              +    +     E+     +  +    G  +H LL+ +      ++             
Sbjct: 882  LDTDAVGEQVLITEANLTPHTFPRGAAPGTFLHDLLEQMNFSQPIEQSWLAEQLQLQGFG 941

Query: 814  KLWPAKEYKNLLLSITRLLENP--MMTTAMSCDSYSEVSVSGKINCPKK----------- 860
            + W    Y+ L  ++   L      +         +E+     I+   +           
Sbjct: 942  EQWSPMLYQWLNDTVQVPLNKSGVTLAGLTPQSKQAELQFYLPIDTLLRASELDALIKSY 1001

Query: 861  ---------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY------- 898
                             ++ G ID +   Q   ++ +YK++    +   +          
Sbjct: 1002 DSLSRQCPALDFLQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEESSAYTQEAMAQAMA 1061

Query: 899  --THIAQLSIYEKILKD 913
               +  Q  +Y   L  
Sbjct: 1062 EHRYDLQYQLYTLALHR 1078


>gi|313113915|ref|ZP_07799473.1| UvrD/REP helicase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623754|gb|EFQ07151.1| UvrD/REP helicase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 892

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/628 (16%), Positives = 194/628 (30%), Gaps = 124/628 (19%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           ++ K   +K  + +      ++                  L   + A YE+  K+    D
Sbjct: 188 VDDKFLPIKAAINQMSRWKDQLVSPEQALASPAKDTK-GALTARIYAAYEKRLKEAGAFD 246

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F+DLI  T  LL +      +R     +  ++L+DE QDTS+ Q+ ++  LT        
Sbjct: 247 FDDLIYQTVQLLAEH---KDVRDFYQNKYRYLLVDEYQDTSVAQFRLVSLLTG------- 296

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                + +  VGD+ QSIY F GA  + +L  +RI              I L  ++RST+
Sbjct: 297 ---PEKNICVVGDDDQSIYRFRGATIENILNFERIYP--------GTKTIRLEQNYRSTS 345

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
           +IL   + V       +G +                     LW         Q       
Sbjct: 346 NILNAANCVIQHNTERKGKT---------------------LWTSNGEGDKVQ------- 377

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                  +    +    A  IA  I   +                 D  +L R    +  
Sbjct: 378 -------VYTAENEQDEASHIADVIGQHLKEGG----------HLADHAILYRMNAQSAP 420

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
           I            I           D   +KD+ +    + +  DD+    ++  P    
Sbjct: 421 IESYF----TRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVANPRDDVRLRRIINEPARKI 476

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQHVIKYIHELIHIAQFCSPHD 502
               +  I     +       I   A+                +    L    +  +  +
Sbjct: 477 GATTVEVIADLATQEGVSMLDIIGHADQYAKLSRAVMPLLKFWQIYQRLQDSLETRTLDE 536

Query: 503 FFTLILGAKKGRQQFIS------RFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISEL 554
           F   ++     +    +          + +  L + +N       +    ++L+  + ++
Sbjct: 537 FAADVIELTGYKAMLEADAAKGHEDAADRLQNLGQLVNNVKNYCDQHGEEATLEGYLEDI 596

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        + ++V +MT+H+AKGLE P VFL+     VF  +  K          
Sbjct: 597 ALISDIDSYN--ESADQVVLMTIHSAKGLEFPYVFLIGMEEGVFPSEMSK---------- 644

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---S 671
                                     ++  EE  RL YVG+TRA  +L I    +     
Sbjct: 645 ------------------------YSEADLEEERRLAYVGITRAKKELYISNSVSRMLYG 680

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +++    +   +   +  + R   ++
Sbjct: 681 RTQRNEPSRFLREIEPEYIEETRSPVLE 708


>gi|315615205|gb|EFU95842.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 3431]
          Length = 854

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 122/853 (14%), Positives = 271/853 (31%), Gaps = 129/853 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +       K++   L F+D++   +  L+  +    +   I       +IDE QD
Sbjct: 4   RALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQD 62

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T   Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +      
Sbjct: 63  TDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 114

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            T          L  ++RS   ++  V+K+FS  ++A    E     ++           
Sbjct: 115 YT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA---- 160

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362
                 +      +  P  + W    +S       S +A+  A  I + +         +
Sbjct: 161 ------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 214

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
            +    R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++
Sbjct: 215 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEML 271

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            L + +++ E + +    L + +   +  DI  +           E+           ++
Sbjct: 272 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDVVVEEFDGYR 323

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539
            + +    +  +    S  +    +L    G ++            + E L      L +
Sbjct: 324 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLES 377

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E      L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +    
Sbjct: 378 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 437

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                      ++    N   + +   +     E  RLLYV +TR+ 
Sbjct: 438 EQAFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 484

Query: 660 DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
               L +        +KK +       +       E      L   I         W T 
Sbjct: 485 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 544

Query: 718 ------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPST 761
                   +   +   E   + +          +              D+     ++ + 
Sbjct: 545 QTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 604

Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
           + +  +    +     +  + G  +H L + +         N++     +    + ++  
Sbjct: 605 VASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVRE--KQELGGFESQWE 661

Query: 822 KNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK---------------- 859
             L   IT +L+ P+      ++   + +   E+     I+ P                 
Sbjct: 662 PVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLS 721

Query: 860 ----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTH 900
                        ++ G ID +   +   ++ +YK++                    + +
Sbjct: 722 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 781

Query: 901 IAQLSIYEKILKD 913
             Q  +Y   L  
Sbjct: 782 DLQYQLYTLALHR 794


>gi|254556106|ref|YP_003062523.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1]
 gi|254045033|gb|ACT61826.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1]
          Length = 755

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 105/752 (13%), Positives = 219/752 (29%), Gaps = 140/752 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++   L   S  +     
Sbjct: 30  GAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLLGESAQEVWVST 89

Query: 66  FSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQD-------------EFIKI 110
           F  L    L +           T     +   L +++   Q+                  
Sbjct: 90  FHALCVRILRRDIEQIGYNRAFTIAGTSEQRTLVKRILTEQNIDSKKFDPRSILSAISNA 149

Query: 111 RDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +M+K + A    ++   +   Y+     +  +DF+DLI+ T  L K+   +  
Sbjct: 150 KNDLQTPEMYKESAASPFESVVADVYLQYQRELAADQAVDFDDLIMLTIQLFKQNPET-- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L + +          + L  VGD  QSIY 
Sbjct: 208 -LAWYQNKFHYIHVDEYQDTNNAQYTLVNLLADKY----------KNLCVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++   +           + L  ++RST  IL+  + V +     +   
Sbjct: 257 WRGANMENILDFEKDYPQ--------ADTVMLEQNYRSTKTILSAANAVINNNSTRRPKK 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW       +++   +   +    +S             
Sbjct: 309 ---------------------LW------TENEPGDKISYYRGQSESDETH--------F 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   +  D +            D  +L R    + ++            I      
Sbjct: 334 VIAKIQESMQQDKM---------DYGDFAILYRTNAQSRVMEESL----VKANIPYTMVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I+D+++     ++ +D ++F  ++  P     +  + K+         ++ 
Sbjct: 381 GNKFYDRKEIRDVLSYLTLAVNDQDSMNFERVVNEPKRGIGQTSVEKLRLFADEAGYSML 440

Query: 468 EYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           E                         ++EL  + ++ S  D    IL      +      
Sbjct: 441 EAASNVDMANGISARAKGALAKFAATMNELRAMREYLSVTDLTQEILDRTGYMKALKDAK 500

Query: 522 ------GNEVIDVLDEFLNFTLRNEQN---SYSSLQELISELEQYPPTIKRA-HSANHNE 571
                     I+ ++EFL+ T + + +         + +  L                  
Sbjct: 501 ATKSLEAQARIENIEEFLSVTKQFDDSYQPEDEDSDKFVDFLADLALVSDVDNVEEEPQA 560

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE PVVFL+     +F                                 
Sbjct: 561 VTLMTLHAAKGLEFPVVFLIGMEEGIFPLSRAMMDEDELEEERRL--------------- 605

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDS 688
                               YVG+TRA  +L +    +       + +    + + +   
Sbjct: 606 -------------------AYVGITRAEKKLYLTNAYSRMLYGRRQNNPASRFVEEIEPE 646

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
              +E                   E     P 
Sbjct: 647 LLKNENTLDGASNTGPKVPFGEDRERRAFTPS 678


>gi|199597352|ref|ZP_03210783.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
 gi|199591868|gb|EDY99943.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001]
          Length = 750

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 122/673 (18%), Positives = 207/673 (30%), Gaps = 135/673 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + K +   P                      + K     +A       E+ +
Sbjct: 66  AAREMRERVGKLV--DPEIARDIWVSTFHALCVRILRRDIDKL-GYNRAFTIADPAEQLT 122

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L+          P K    + I       K +L   Q           TY   ++     
Sbjct: 123 LVKHILADFNLDP-KRYDPKSILGAISGAKNELIDPQ-----------TYSDEQANSPFT 170

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                + A Y++  + +  LDF+DLI+ T  L +K   +        ++  +I +DE QD
Sbjct: 171 KTVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET---LGFYQRKFRYIHVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++  L E +            L  VGD  QSIY + GA  + +L  K+   K 
Sbjct: 228 TNEAQYRLVHMLAEGY----------HNLCVVGDADQSIYGWRGANMQNILDFKKDYPK- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST  IL+  + V     N Q  +                   
Sbjct: 277 -------AQVILLEQNYRSTKTILSAANDVIKNNLNRQAKT------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW       ++    +   + +         S +  A  +   I   +  +       
Sbjct: 311 --LW------TENATGDKITYYRA--------QSETDEAIFVIRRIEAEMAQNHR----- 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  I            I           D   I+D +A  R 
Sbjct: 350 ----KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYDRKEIRDALAYFRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKF 481
           +++ +DD+SF  ++  P        + K+         ++ E          +       
Sbjct: 402 VVNPDDDMSFNRIVNEPKRGIGNTSVAKLEAFANQHDWSLLEAAANAELSPISGKARGNL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
               K I  L    +  +  +    IL          +    E     + L+E L+ T  
Sbjct: 462 AEFGKMIQRLGQRRKDLNVTEMMQAILDDSGYLGALRAANTLEAETRVENLEELLSVTQG 521

Query: 539 N------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E        + ++EL             +  EV +MT+H AKGLE PVVFLV 
Sbjct: 522 FDARYQPENEDSDIFVDFLAELALLSDQD--EVEEDAQEVTLMTLHAAKGLEFPVVFLVG 579

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F                                        + +   EE  RL Y
Sbjct: 580 MEEGLFPLS----------------------------------RAAMDEGELEEERRLAY 605

Query: 653 VGMTRASDQLIIC 665
           VG+TRA  +L + 
Sbjct: 606 VGITRAKQKLYLT 618


>gi|124010006|ref|ZP_01694669.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134]
 gi|123983964|gb|EAY24352.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134]
          Length = 743

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/581 (16%), Positives = 194/581 (33%), Gaps = 114/581 (19%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLII 154
           +  ++  +++  I  R+  N     +   A        +   Y+E   K+  +DF+DL+ 
Sbjct: 139 VLNRISGAKNRLISYREYLNNPIYAEDDRAYRRPEIGRIYKIYQERAIKSNAMDFDDLLF 198

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
           NTN L +    +     K  Q+  ++LIDE QDT+L Q+ ++R L            +  
Sbjct: 199 NTNILFRDHPAA---LQKYQQKFKYLLIDEFQDTNLSQYLIVRRLAA----------AHH 245

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIY+F GA+ + +L  ++               I L  ++RST  I+   
Sbjct: 246 NICVVGDDAQSIYAFRGADIQNILNFEKDYPT--------LQTIRLEQNYRSTKTIVKAA 297

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + + +  +                           +W           + +  +    F 
Sbjct: 298 NSLIAKNKAQLQK---------------------DVW----------TSNEDGNLIRLFK 326

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           ++       ++A+ I                  +  +   D  +L R    +  I    R
Sbjct: 327 AMSDNEEGKMVAQSIFEE-------------KMQHQLGNNDFAILYRTNAQSRSIEEALR 373

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  I               IKDL++  R+ ++ +D+ +   ++  P        + 
Sbjct: 374 ----KANIKYKIIGGLSFYQRREIKDLISYLRYTVNHKDEEALKRIINLPKRGIGNTTLQ 429

Query: 455 K-ICTQRHETETVYEYIQKFANCGISK----FQHVIKYIHELIHIAQFCSPHDFFTLILG 509
           K + T       ++E I         +         + I +    +      +  +L+  
Sbjct: 430 KVLATAYESELPLWEVISNIRKYVTGRATTAIAGFAELIKKFEDASTKLDAFETASLVAK 489

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                +        E     + + E LN       N  +  ++L + L++         +
Sbjct: 490 ESGLLKDLYEDKTIEGLSRYENVQELLNAIKEFVDNPDNQEKDLSAFLQEVSLATSADEA 549

Query: 567 AN--HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            +    +V +MT+H AKGLE   V++V    ++F  +                       
Sbjct: 550 EDDGEEKVTLMTIHAAKGLEFQQVYVVGLEEELFPSQMALSS------------------ 591

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                           ++  EE  RL YV +TRA  +L + 
Sbjct: 592 ----------------RNELEEERRLFYVAITRAEKKLTLS 616


>gi|50842799|ref|YP_056026.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            KPA171202]
 gi|289425489|ref|ZP_06427266.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|295130853|ref|YP_003581516.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|50840401|gb|AAT83068.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            KPA171202]
 gi|289154467|gb|EFD03155.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|291376029|gb|ADD99883.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|313764135|gb|EFS35499.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1]
 gi|313819377|gb|EFS57091.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2]
 gi|313820642|gb|EFS58356.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1]
 gi|313822553|gb|EFS60267.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2]
 gi|313827479|gb|EFS65193.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2]
 gi|313830016|gb|EFS67730.1| UvrD/REP helicase [Propionibacterium acnes HL007PA1]
 gi|313832980|gb|EFS70694.1| UvrD/REP helicase [Propionibacterium acnes HL056PA1]
 gi|313838405|gb|EFS76119.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1]
 gi|314914865|gb|EFS78696.1| UvrD/REP helicase [Propionibacterium acnes HL005PA4]
 gi|314918020|gb|EFS81851.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1]
 gi|314920396|gb|EFS84227.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3]
 gi|314924885|gb|EFS88716.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3]
 gi|314929976|gb|EFS93807.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1]
 gi|314956488|gb|EFT00776.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1]
 gi|314957332|gb|EFT01435.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1]
 gi|314960467|gb|EFT04569.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2]
 gi|314972837|gb|EFT16934.1| UvrD/REP helicase [Propionibacterium acnes HL053PA1]
 gi|314975741|gb|EFT19836.1| UvrD/REP helicase [Propionibacterium acnes HL045PA1]
 gi|314983661|gb|EFT27753.1| UvrD/REP helicase [Propionibacterium acnes HL005PA1]
 gi|314986296|gb|EFT30388.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2]
 gi|314989617|gb|EFT33708.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3]
 gi|315080858|gb|EFT52834.1| UvrD/REP helicase [Propionibacterium acnes HL078PA1]
 gi|315084654|gb|EFT56630.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2]
 gi|315085339|gb|EFT57315.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3]
 gi|315095786|gb|EFT67762.1| UvrD/REP helicase [Propionibacterium acnes HL038PA1]
 gi|315101553|gb|EFT73529.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1]
 gi|315105905|gb|EFT77881.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1]
 gi|327329833|gb|EGE71588.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            HL096PA2]
 gi|327442647|gb|EGE89301.1| UvrD/REP helicase [Propionibacterium acnes HL043PA1]
 gi|327443715|gb|EGE90369.1| UvrD/REP helicase [Propionibacterium acnes HL043PA2]
 gi|327452206|gb|EGE98860.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3]
 gi|327452695|gb|EGE99349.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2]
 gi|328752851|gb|EGF66467.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2]
 gi|328753882|gb|EGF67498.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1]
 gi|328761486|gb|EGF75010.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            HL099PA1]
          Length = 1072

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 149/995 (14%), Positives = 298/995 (29%), Gaps = 122/995 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         I    +  +       L KA           I +    L+    +   +
Sbjct: 122  AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K +   +   +   L    K+  D +  I    +     +  L  +       A Y+ 
Sbjct: 182  PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+ +L
Sbjct: 234  LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
               F    + H     + AVGD  Q+IY + GA    +L   R    +    G    ++ 
Sbjct: 291  ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  + R    I+   +               ++  +R   S   + G     +       
Sbjct: 345  LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
             Q     E       ++          +  A  +       TI         +  D  +L
Sbjct: 391  GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            VR+  D   +            + V   +   L     I  ++A  R ++ ++DD +   
Sbjct: 443  VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498

Query: 440  MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483
            +L +P    S DD+  +  +                      + + + +    G  + Q 
Sbjct: 499  LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558

Query: 484  VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             +K +   I      +  SP D    I           +   +      D LD   N   
Sbjct: 559  ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618

Query: 538  RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               ++    ++  +++ L         + RA + + + V + TVH AKGLE P+V + D 
Sbjct: 619  EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678

Query: 594  GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
               VF              ++PS        I  P S S  +  + +    + S   E  
Sbjct: 679  AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737

Query: 649  RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA ++L++  H      +       + D++ D           +  + I   
Sbjct: 738  RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797

Query: 708  -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                 +         +    + +  +K       +  ++  P +
Sbjct: 798  TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801
               ++   L+ +    +           ++    G   H+         + I      + 
Sbjct: 858  LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917

Query: 802  KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                    T+ A        +   L S+ +  E      A      + ++V         
Sbjct: 918  AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971

Query: 861  DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              ++ GR+D +     +     + ++KT      +          QLSIY      +   
Sbjct: 972  QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                +  +  +V   +             A I T 
Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|68249734|ref|YP_248846.1| DNA-dependent helicase II [Haemophilus influenzae 86-028NP]
 gi|68057933|gb|AAX88186.1| DNA helicase II [Haemophilus influenzae 86-028NP]
          Length = 727

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 194/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L+               +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 235 YKWIKILSG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 277 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             + F+ L +       A+ +A  I + +               
Sbjct: 314 ------TEGEKGDPVGIYAAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 613 KLTISYAESRR 623


>gi|331643504|ref|ZP_08344635.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H736]
 gi|331036975|gb|EGI09199.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H736]
          Length = 1183

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 309  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 368  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 420  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 470  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 520  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 580  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 637  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 689  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 743  TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 790  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 850  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 909

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 910  SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 970  PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1026

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1027 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123


>gi|160877119|ref|YP_001556435.1| DNA-dependent helicase II [Shewanella baltica OS195]
 gi|160862641|gb|ABX51175.1| DNA helicase II [Shewanella baltica OS195]
 gi|315269321|gb|ADT96174.1| DNA helicase II [Shewanella baltica OS678]
          Length = 722

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/551 (17%), Positives = 185/551 (33%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     +         HIL+DE QDT+ IQ
Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQDRFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L                +  VGD+ QSIY + GA+ + + R  +          
Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLKDFP------- 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L  ++RS  +IL   + + +      G                      +LW 
Sbjct: 273 -SATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + +    S    F+ + +       AR I   I++                 
Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            ++          +   IKD M   R I +++
Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKD 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +  T R    T+++   +       A    +  +  +
Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQHELTLWQASMRLLDEKVLAGRAANSVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541
             I  +    Q    +     ++ A   +  + +  G +     + L+E +      E  
Sbjct: 463 DLIMTMREDTQDMVLYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL   L        +    A  + V++MT+H+AKGLE  +VF+      +F  
Sbjct: 523 EELEDMGELNGFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                      +    +E  RL YVGMTRA +
Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 609 KLYITYAESRR 619


>gi|213968510|ref|ZP_03396653.1| DNA helicase II [Pseudomonas syringae pv. tomato T1]
 gi|301384752|ref|ZP_07233170.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato Max13]
 gi|302133168|ref|ZP_07259158.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213926798|gb|EEB60350.1| DNA helicase II [Pseudomonas syringae pv. tomato T1]
 gi|330878141|gb|EGH12290.1| DNA-dependent helicase II [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330964448|gb|EGH64708.1| DNA-dependent helicase II [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 727

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 193/592 (32%), Gaps = 116/592 (19%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +  S    LT  K +   YE A ++  V+DF +L++   DL +       +  
Sbjct: 154 EGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDLWRDNPG---LLA 210

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+ QSIY + G
Sbjct: 211 HYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDDDQSIYGWRG 260

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + + +                 +I L  ++RSTA IL   + +        G     
Sbjct: 261 AKIENIHQYSDDFP--------DTEVIRLEQNYRSTASILKAANGLIINNSGRLGK---- 308

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            +LW           + +  +  + F+   +       AR +  
Sbjct: 309 -----------------ELW-------TDVGDGELINLYAAFNEHDE-------ARYVVE 337

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           TI + + T           I   DI +L R    + ++           +I         
Sbjct: 338 TIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERIPYRIYGGQR 383

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470
             +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH   +++E +
Sbjct: 384 FFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARHADVSMWEAM 443

Query: 471 Q------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521
           +                   I+ I  L         H     ++         +Q     
Sbjct: 444 RLLVANKGLTGRAAGALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLITYHEQEKGEK 503

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
           G   ++ L+E ++     E +     L  L + L              + + +++MT+H+
Sbjct: 504 GQARVENLEELVSAARAFENHESDEELTPLAAFLGHASLEAGDTQAQEHEDSIQLMTLHS 563

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P VFLV     +F HK   +                                  
Sbjct: 564 AKGLEFPHVFLVGMEEGLFPHKMSLEEPG------------------------------- 592

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                EE  RL YVG+TRA  QL++                    V +    
Sbjct: 593 ---RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPA 641


>gi|163758971|ref|ZP_02166057.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43]
 gi|162283375|gb|EDQ33660.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43]
          Length = 840

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/635 (17%), Positives = 191/635 (30%), Gaps = 114/635 (17%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +    +DF DL+     L +       +  +  Q+   IL+DE QDT+ 
Sbjct: 223 RVLYTAYQERLQTLNAVDFGDLLCLPIRLFRANPD---VLKEYQQKFRFILVDEYQDTNT 279

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +              +  VGD+ QSIY + GAE + +LR ++        
Sbjct: 280 AQYMWLRLLAQRPT------GERPNICCVGDDDQSIYGWRGAEVENILRFEKDFP----- 328

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I L  ++RST  IL     + S  E   G +  +                   
Sbjct: 329 ---GAKVIRLERNYRSTEHILGAAGHLISHNEGRLGKTLFT------------------- 366

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                    S  + ++    + +DS  +       AR I   I          +N     
Sbjct: 367 -------EQSDPDHERVMVHAAWDSEEE-------ARAIGEEIEQAQIKGRALNN----- 407

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                + +LVR              L     ++          + L I+D MA  R +  
Sbjct: 408 -----MAILVRASFQMREFEERFVTL----GLNYRVIGGPRFYERLEIRDAMAFFRVVCQ 458

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ------H 483
             DDL+F  ++  P     E  + ++    R     + E  +        K +       
Sbjct: 459 PADDLAFERIVNVPKRGLGEAAVRQVHDVARGRGVPMLEAARDLILTDEMKARPRKSLTD 518

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
           V++       + +    H+    IL      + + +    +    ++ L E +      E
Sbjct: 519 VVEMFTRWQSMLENTPGHELAETILEESGYTEMWQNDRSADAPTRLENLKELVETISGFE 578

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    + + LE     +   ++ + + V IMT+H+AKGLE   VFL      +F H
Sbjct: 579 S--------MRAFLEHVALVMDTDNNPDLDAVSIMTLHSAKGLEFETVFLPGWEEGLFPH 630

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                  +    +S  EE  RL YVG+TRA  
Sbjct: 631 QR--------------------------------ALDEGGRSGLEEERRLAYVGLTRAKL 658

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
              I   SN               + +       V ++                   H  
Sbjct: 659 FCHIWFVSNRRIHGLWQSTLPSRFLDELPEAHVEVAEMDTGYGGYGRGGRFGASGGGHSG 718

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                      +                N  +   
Sbjct: 719 GPYGASRFDKAEPFAGNYNTPGWKRAQANKTDAAR 753


>gi|71275503|ref|ZP_00651789.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
 gi|71900751|ref|ZP_00682872.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|170729288|ref|YP_001774721.1| DNA-dependent helicase II [Xylella fastidiosa M12]
 gi|71163803|gb|EAO13519.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
 gi|71729481|gb|EAO31591.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|167964081|gb|ACA11091.1| DNA helicase II [Xylella fastidiosa M12]
          Length = 723

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 105/629 (16%), Positives = 199/629 (31%), Gaps = 121/629 (19%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +S    +   + +   Y+E   +  ++DF +L++  ++LL+       +   
Sbjct: 149 RRPEHIQPESHDDWIETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPA---LLTH 205

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  ILIDE QDT+ IQ+  +R L           +    +FAVGD+ Q+IY + GA
Sbjct: 206 YRSRFREILIDEFQDTNAIQYAFVRVLA----------NDTGHIFAVGDDDQAIYGWRGA 255

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V    +               I L  ++RS+A+IL   + + +   +  G      
Sbjct: 256 KVEHVQHFLKDFPN--------VQTIRLEQNYRSSANILDAANAIIAHNPDRIGKR---- 303

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW             +     + ++ + +       AR I   
Sbjct: 304 -----------------LW-------TESGVGESIDLYAAYNEIDE-------ARYIVER 332

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 +I VL R    +     + +       I          
Sbjct: 333 ARQWVRDGG----------SYGEIAVLYRSNAQSRAFEEVLQSE----HIPYRVYGGMRF 378

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F  ++ +P+    E  + ++    R +   +++   
Sbjct: 379 FERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIGERTLDEVRHLARTQGLALWDAAM 438

Query: 472 KFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                        +     +  + +L          +    +L   + RQ +        
Sbjct: 439 ACTQSTTLTARARNALASFLNLLQQLAVETNQMGLAERIDHMLQRSELRQHWKKEARGSL 498

Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575
                 + LDE ++   R            + EL + L             A    V++M
Sbjct: 499 DAESRQENLDELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQVQAGEEGVQLM 558

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P+VFLV   + +F                                     
Sbjct: 559 TLHSAKGLEFPLVFLVGLENGLFPS----------------------------------A 584

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
               +    EE  RL YVG+TRA  +LI+          K N       + +   N    
Sbjct: 585 RSLDEHDRLEEERRLAYVGITRARHKLILSYAQARRIHGKDNYNVPSRFLREIPQNLLHE 644

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPL 724
            +  +  S           +    +  P+
Sbjct: 645 VRPTIQVSHQTPLGAVQRPAHDERDAAPI 673


>gi|325294300|ref|YP_004280814.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325064748|gb|ADY72755.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 705

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 102/552 (18%), Positives = 182/552 (32%), Gaps = 115/552 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K +   Y +  K+N   DF+DL+I   +LLK  +    ++ K      ++LIDE QDT+ 
Sbjct: 164 KDIFEIYNKRLKENNAFDFDDLLIYGRELLKSEE----LQRKYSDFFQYVLIDEYQDTNR 219

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+E+ R+LT+D             +  VGDE Q IY++ GA  + +L  ++  Q     
Sbjct: 220 IQYEIARALTKD----------KGNICVVGDEDQCIYTWRGANIENILSFEKDFQN---- 265

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II+L  ++R T  IL   + V    +  +G                        
Sbjct: 266 ----AKIIKLEKNYRCTKVILDAANAVIENNKLRKGKKLY-------------------- 301

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                         +               S    AR ++ T+   +             
Sbjct: 302 --------TDNPAGEPIRLYVA-------ESDVDEARFVSKTVKQFLKKG---------- 336

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++  DI +  R    + ++    R       IS          +   IKD++A  R +L 
Sbjct: 337 VKPADIAIFYRTNSQSRVVEDALR----REGISYKIVGGLKFYERKEIKDIIAYLRVVLF 392

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC-----GISKFQHVI 485
           ++D +S + +L  P          K+     +  +    ++  ++           + +I
Sbjct: 393 EKDTISLLRILNVPKRGLGSAVEKKLKEILQQETSNIGALKLLSDELRMEKQKKAIEDLI 452

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQ 541
             + E+        P+D    I  +    +        +     + + E  N      E+
Sbjct: 453 DIVEEIRKKLYNLKPYDLIKFITVSIGYEKYLRKEHPEDWESRVENIKELGNTIQEFSER 512

Query: 542 NSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    +  L      + +        +V +MTVH +KGLE P+VF+      +F H
Sbjct: 513 EKLQGEDLYLEFLSTITLSSDQDELDEEDEKVTLMTVHASKGLEFPIVFITGLEEGLFPH 572

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                             +     K   EE  RL YV +TRA  
Sbjct: 573 ----------------------------------IKSLDTKEEIEEERRLFYVAITRAKR 598

Query: 661 QLIICKHSNTSN 672
            L +       +
Sbjct: 599 LLSLSYAKKRRS 610


>gi|126172693|ref|YP_001048842.1| DNA-dependent helicase II [Shewanella baltica OS155]
 gi|217974967|ref|YP_002359718.1| DNA-dependent helicase II [Shewanella baltica OS223]
 gi|125995898|gb|ABN59973.1| ATP-dependent DNA helicase UvrD [Shewanella baltica OS155]
 gi|217500102|gb|ACK48295.1| DNA helicase II [Shewanella baltica OS223]
          Length = 722

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/551 (17%), Positives = 185/551 (33%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     +         HIL+DE QDT+ IQ
Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQDRFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L                +  VGD+ QSIY + GA+ + + R  +          
Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPT------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L  ++RS  +IL   + + +      G                      +LW 
Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + +    S    F+ + +       AR I   I++                 
Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            ++          +   IKD M   R I +++
Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKD 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +  T R    T+++   +       A    +  +  +
Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQHELTLWQASVRLLDEKVLAGRAANSVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541
             I  +    Q    +     ++ A   +  + +  G +     + L+E +      E  
Sbjct: 463 DLIMTMREDTQDMVLYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL   L        +    A  + V++MT+H+AKGLE  +VF+      +F  
Sbjct: 523 EELEDMGELNGFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                      +    +E  RL YVGMTRA +
Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 609 KLYITYAESRR 619


>gi|153009094|ref|YP_001370309.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188]
 gi|151560982|gb|ABS14480.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188]
          Length = 864

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 115/700 (16%), Positives = 197/700 (28%), Gaps = 157/700 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTEDFFVGKNTH-----------------------------------SSPRT 215
            Q+  +R L +                                            S+   
Sbjct: 269 AQYLWLRLLAQRPQTRNTAPAPIPTEGRQARPGVAPDGAPPRSEPRSGDSVSANKSAQVN 328

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + GAE   +LR ++              +I+L  ++RSTA IL    
Sbjct: 329 LCCVGDDDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGAAA 380

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            + +  E   G +  +                               +  +    + +DS
Sbjct: 381 HLIAHNEGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDS 414

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +       AR +   I        + +N          + +LVR              
Sbjct: 415 EEE-------ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVT 457

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
           L     ++          + L I+D MA  R +    DDL+   ++ +P     E  I +
Sbjct: 458 L----GLNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQ 513

Query: 456 IC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           I    R    +++          +      S  + V++       +       +    IL
Sbjct: 514 IHDYARARDISMFSAACDLIETEELKPKPRSALREVVENFLRWQSLIDNTPHTELAETIL 573

Query: 509 GAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
                   + +    E    ++ L E +      E         L   LE     +    
Sbjct: 574 DESGYTAMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVALVMDAEQ 625

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
           + + + V IMT+H+AKGLE   VFL      +F H+                        
Sbjct: 626 NEDLDAVNIMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------- 662

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                     +    +S  EE  RL YVG+TRA   L I   SN                
Sbjct: 663 ---------ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR-------------- 699

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                      +          E    E +         +                    
Sbjct: 700 IHGMWQSTIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQR 759

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
             +N  +       S   +K +              RG I
Sbjct: 760 AQQNRSDATRNNWGSRSGSKVERIGYGETDSGFGAGRGSI 799


>gi|71734750|ref|YP_277224.1| DNA-dependent helicase II [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555303|gb|AAZ34514.1| DNA helicase II [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 727

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 120/661 (18%), Positives = 216/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L   A     H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKAMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|88861280|ref|ZP_01135912.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2]
 gi|88816761|gb|EAR26584.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2]
          Length = 721

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/582 (16%), Positives = 196/582 (33%), Gaps = 121/582 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++A  +  ++DF ++++   +LLK       +     Q   H+L+DE QDT+ IQ
Sbjct: 172 VYTAYQDACDRAGLVDFAEILLRCYELLKNSPT---LLRHYQQRFPHMLVDEFQDTNTIQ 228

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  ++ +            +   +  VGD+ QSIY + GA+ + + R             
Sbjct: 229 YAWLKLIAG----------TGGNVMIVGDDDQSIYGWRGAKIENIRRFLTDF-------- 270

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST+ ILT  + + +      G S                     LW 
Sbjct: 271 -DAQTIRLEQNYRSTSTILTAANALIANNSERMGKS---------------------LW- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                          S  + ++ L +       AR I   I   +               
Sbjct: 308 ------TEGSEGDPISIYAAYNELDE-------ARFIVGKIKTWLNAGNAL--------- 345

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +D  +L R    + ++            +           +   IKD ++  R + +++
Sbjct: 346 -QDAAILYRNNAQSRILEEAL----LQEGLKYRIYGGMRFFERQEIKDALSYLRLVSNRQ 400

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQHVI 485
           DD +F  ++ +P     E  +  I    R+E+  ++         +       +     I
Sbjct: 401 DDAAFERVINTPTRGIGERTLSLIRDCARNESIPLWYAAKALIEHKHLTGRAANAVNSFI 460

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE-- 540
           + I ++  ++      +     +        + +  G +    ++ L+E +N   + E  
Sbjct: 461 ELIEKVEKVSIDLPLEEQAKQAIHTSGLMAMYQAEKGEKGQARVENLEELINACSQFELP 520

Query: 541 -QNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +  ++S L   +S               + + V++MT+H+AKGLE P+VF+      +F
Sbjct: 521 NEEEFASPLTGFLSYTALESGE--GQAEEHEDAVQMMTLHSAKGLEFPLVFMAGVEEGMF 578

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                      +    EE  RL YVGMTRA
Sbjct: 579 PSQQSN----------------------------------EESGRLEEERRLCYVGMTRA 604

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            ++L I          +    +    + +         +I+ 
Sbjct: 605 MEKLYISHAETRRLYGQEKYHSPSRFLREIPEACVEEIRIRT 646


>gi|255321476|ref|ZP_05362634.1| ATP-dependent DNA helicase PcrA [Campylobacter showae RM3277]
 gi|255301332|gb|EET80591.1| ATP-dependent DNA helicase PcrA [Campylobacter showae RM3277]
          Length = 694

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/543 (17%), Positives = 188/543 (34%), Gaps = 118/543 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YEE    N ++DF+DL+  +  +L + +    +  +I +   ++++DE QDT+
Sbjct: 173 LANIYKLYEEYLAANNLVDFDDLLCLSYKILDEDEA---LAREISRRYAYVMVDEYQDTN 229

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+ ++R L            +   +  VGD+ QSIY + GA+ + +L  K        
Sbjct: 230 DLQYRLLRKLCL----------THENIAVVGDDDQSIYGWRGAKIENILNFKDQF----- 274

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
              +   +I L  ++RST+ IL   +++     N  G    ST                 
Sbjct: 275 ---KDAKVIRLEQNYRSTSQILRAANELIDHNRNRLGKELKSTK---------------- 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          +  +     D   +         ++A  I  ++ +          
Sbjct: 316 ------------EGGEDVALMESDDETMESL-------KVAKRIKKLLDSG--------- 347

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             QA DI +L R    +  +       K    I           +   +KD+++  R + 
Sbjct: 348 -AQASDIAILYRINALSRSLEEGLTKEK----IPYKMVGGVKFYERAEVKDVISYLRLVA 402

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYI 488
           ++ DD S   ++  P     +  + KI         +++E I           + ++  +
Sbjct: 403 NENDDFSLKRVINRPKRGLGKVSLAKIEKIAFEHKFSLFEAISSLDENDKDLSKKIVSSL 462

Query: 489 HE----LIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNS 543
            E    L  + +  SP++    +      ++ + S   G+E +  +DEF        + +
Sbjct: 463 GEFAANLRELKECDSPYELVDKLEAKFGIKKYYESLPDGSERVANIDEFYATIKDQIRQN 522

Query: 544 YS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            S S++E ++E+                 + IM++H +KGLE   +F++      F    
Sbjct: 523 PSFSIEEFLNEIALQSEQDNI----GGEAISIMSIHASKGLEFEHLFVIGLEEGFFPLLG 578

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YV +TRA   L
Sbjct: 579 DGS-------------------------------------DIEEERRLAYVAITRAKKTL 601

Query: 663 IIC 665
            + 
Sbjct: 602 TLS 604


>gi|256024679|ref|ZP_05438544.1| exonuclease V subunit beta [Escherichia sp. 4_1_40B]
 gi|301645213|ref|ZP_07245166.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 146-1]
 gi|307139504|ref|ZP_07498860.1| exonuclease V subunit beta [Escherichia coli H736]
 gi|301076483|gb|EFK91289.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 146-1]
          Length = 1180

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 967  PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|148828339|ref|YP_001293092.1| DNA-dependent helicase II [Haemophilus influenzae PittGG]
 gi|148719581|gb|ABR00709.1| DNA helicase II [Haemophilus influenzae PittGG]
          Length = 726

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 192/551 (34%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 234 YKWIKILAG----------KTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 276 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P        +  +    R    T+++ +Q        A    +      
Sbjct: 406 DDAAFERVINTPTRGIGNRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 526 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTISYAESRR 622


>gi|296270932|ref|YP_003653564.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296093719|gb|ADG89671.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 1128

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 140/1074 (13%), Positives = 289/1074 (26%), Gaps = 155/1074 (14%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
                  + +    +       P     +       +      T       L+ A +    
Sbjct: 84   AELAERVRKRLGQLAASGLIPPELLDHEPAVSTYHAYAARLFTDHALRDGLEPAMRLATP 143

Query: 63   EERFSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
               + L +           K ++    +     +L  +L +   E   +R      +   
Sbjct: 144  AVAWQLAAQVVGQYDGPMDKVDLTPPSVTAAVLELAGELAEHLCEPDDVRGFGRWLRDRF 203

Query: 122  STLASLTLAKY---------------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            + L    +A                 L   Y+  K++  +LD  D +     +  +    
Sbjct: 204  AELPGKPIAAQRKVIERQEVREQLLPLVEAYQRLKRERGLLDHGDQVALAARIALRHPEV 263

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +          +L+DE QDTS  Q E++R+L                + AVGD  QSI
Sbjct: 264  GAV---ERGRYAVVLLDEYQDTSHAQLELLRALYG----------GGHPVTAVGDPCQSI 310

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y + GA    +LR       R    G+   +  L +SFR+   +L V     +  +    
Sbjct: 311  YGWRGASAGNLLRFPGHFPTR---TGEPAPVKCLSVSFRNGERVLGVA----ARIQEPLR 363

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                    +    +R G+ G V       ++ +++            +      S+  +A
Sbjct: 364  AEAREVPVLTPGPNRRGR-GRVVCAFHRTAEEEAEWIAGLVDGLLRGEGAAAAGSSLGVA 422

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
                     +   +      +   +  KDI +LVRKR          R    D  I V  
Sbjct: 423  VPREGAPDGLPWPEGERDPDRP-AVSPKDIAILVRKRSQFA----ALRRALEDRGIPVEV 477

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF-----------K 455
                 L     + D++A  R +       + + +L  P +     D+            +
Sbjct: 478  VGLGGLLMVPEVADIVATLRALYDPTAGDALLRLLAGPRWRIGPADLKTLGDLARELTKE 537

Query: 456  ICTQRHETETVYEYIQKFANCG------------------------ISKFQHVIKYIHEL 491
            +   R E + +   + + A                             +   +   +  L
Sbjct: 538  LREGRREGDPLENAVAELAEEQGNLIDALDELPDRPDWLARFSPRARERLPALALELRAL 597

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--VIDVLDEFLNFTLRNE-QNSYSSLQ 548
               A      +    +    +   +  ++ GN       LD FL+   R   ++   +L 
Sbjct: 598  RAHAGR-PLPELIGEVERRLRLDIEVAAKGGNPLAARADLDAFLDIAARFAGESEDGTLG 656

Query: 549  ELISELEQYPPTIKR------AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              ++ L+                    + V++MTVH AKGLE PVV +            
Sbjct: 657  AFLAYLKAAETEEFGLKTAEAGQVGETDTVKLMTVHMAKGLEWPVVIVPGLSQATTQKGW 716

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRN----------------NIVSDLIKHLKKSTQEE 646
            + K  + P+           P+                     + ++   +  +     E
Sbjct: 717  VTKGSLFPAAPVTNPRWTENPRKLPYPLRGDRTDLPRLPSLERDALTAFEEDCRTRDLLE 776

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RL YV +TRA   L+       ++ +      + + +        R        +   
Sbjct: 777  ERRLAYVAVTRAHYLLVASGFRWGTSSRPLEPSMFLEEIRAKGAEVARWWDGDEEENPLL 836

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +    +W      +   E    +++ +  +       +       E         D  G
Sbjct: 837  ADPPRADWPQVGVPDPVREGARLVEEALAARAEQDAAGAERDAAEAERDTAGAVFADPVG 896

Query: 767  KTNLESLLSDNQTFNRGLII---------HKLLQVIF----------------------- 794
              +        + + R   +         H+  QV+                        
Sbjct: 897  DLS-PEDRERMRAWARDTELLLRERAEHHHRAGQVVELPDRLTVSSLVTLAADPVAFAQS 955

Query: 795  --------TLPEHKRKNFITSYCTK---NAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
                      P  +R      +        +L    +        +   +   +      
Sbjct: 956  VRRPLPRKPAPHARRGTAFHRWLETRWGQQRLLDESDLPGAADEQSGDADLAELQELFER 1015

Query: 844  DSYS---EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
              ++    V           D ++ GR+D +        + +++T      E        
Sbjct: 1016 SEWARRTPVDQEVPFQMVIGDRLVRGRMDAVFREGDGYVVVDWRTGRRPQGEEAEAAAVQ 1075

Query: 901  IAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
            +A    Y          P + +     YV   +               +  +IP
Sbjct: 1076 LA---AYRLAWSALAGVPLEKVSAAFHYVRYNETHRPVDLLDAAGLTALIERIP 1126


>gi|182680607|ref|YP_001828767.1| DNA-dependent helicase II [Xylella fastidiosa M23]
 gi|182630717|gb|ACB91493.1| DNA helicase II [Xylella fastidiosa M23]
          Length = 723

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 104/629 (16%), Positives = 199/629 (31%), Gaps = 121/629 (19%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +S    +   + +   Y+E   +  ++DF +L++  ++LL+       +   
Sbjct: 149 RRPEHIQPESHDDWIETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPA---LLTH 205

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  ILIDE QDT+ IQ+  +R L           +    +FAVGD+ Q+IY + GA
Sbjct: 206 YRSRFREILIDEFQDTNAIQYAFVRVLA----------NDTGHIFAVGDDDQAIYGWRGA 255

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V    +               I L  ++RS+A+IL   + + +   +  G      
Sbjct: 256 KVEHVQHFLKDFPN--------VQTIRLEQNYRSSANILDAANAIIAHNPDRIGKR---- 303

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW             +     + ++ + +       AR I   
Sbjct: 304 -----------------LW-------TESGVGESIDLYAAYNEIDE-------ARYIVER 332

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 +I VL R    +     + +       I          
Sbjct: 333 ARQWVRDGG----------SYGEIAVLYRSNAQSRAFEEVLQSE----HIPYRVYGGMRF 378

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F  ++ +P+    E  + ++    R +   +++   
Sbjct: 379 FERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIGERTLDEVRHLARTQGLALWDAAM 438

Query: 472 KFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                        +     +  + +L          +    +L   + RQ +        
Sbjct: 439 ACTQSTTLTARARNALASFLNLLQQLAVETNQMGLAERIDHMLQRSELRQHWKKEARGSL 498

Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575
                 + LDE ++   R            + EL + L             A    V++M
Sbjct: 499 DAESRQENLDELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQVQAGEEGVQLM 558

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P+VFLV   + +F                                     
Sbjct: 559 TLHSAKGLEFPLVFLVGLENGLFPS----------------------------------A 584

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
               +    EE  RL YVG+TRA  +LI+          K N       + +   +    
Sbjct: 585 RSLDEHGRLEEERRLAYVGITRARHKLILSYAQARRIHGKDNYNVPSRFLREIPQDLLHE 644

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPL 724
            +  +  S           +    +  P+
Sbjct: 645 VRPTIQVSHQPPLGATQRPAHDERDAAPI 673


>gi|251789629|ref|YP_003004350.1| exodeoxyribonuclease V subunit beta [Dickeya zeae Ech1591]
 gi|247538250|gb|ACT06871.1| exodeoxyribonuclease V, beta subunit [Dickeya zeae Ech1591]
          Length = 1224

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 135/1051 (12%), Positives = 287/1051 (27%), Gaps = 167/1051 (15%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
            F ++ +E    +     P P +     +   +   +        +A+  +         +
Sbjct: 224  FSVARDEKTRRLAALKAPWPQWCGELRDVLHTAVAQKKADGRKLQARYFEAWL------D 277

Query: 65   RFSLLSSFFLT--QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            +    ++   T     T    +  Q + +     +E  +      ++   +  +      
Sbjct: 278  KLHHWATSDETTLDIGTGWMRLTPQGLRECWKVPEEAPQHPALTAMETLAQQLSELPEPR 337

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            +       ++++  +   ++    + F+DL+   +  L+  D    +  +I ++    +I
Sbjct: 338  SRLLRHACRWVSQRFRHEQESRAQMGFQDLLTRLDAALRG-DNGERLAQRIRRQFPLAMI 396

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT  +Q+ +  +L +        +   + L  +GD KQ+IY+F GA+    LR +R
Sbjct: 397  DEFQDTDPLQYRIFDTLYQ-----VADNDPQQGLILIGDPKQAIYAFRGADIYTYLRARR 451

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG-------LSEDSTTTI 295
                             L  +FRST  ++  V++VF   EN             D    +
Sbjct: 452  D---------TDGRHYTLGTNFRSTQAMVDAVNQVFMQAENRADGAGAFLFRQPDGDNPV 502

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTIS 354
                 +    G  ++W       +         WT   D  +        +A   A  + 
Sbjct: 503  PFLPVQAN--GRDEVW-----MQEGSTAAALTCWTLETDEPVSSAEYRQRMAAGCAREMV 555

Query: 355  NMIG------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
             ++                 R ++  D+ VLV   ++   +             SV  +D
Sbjct: 556  RLLQLGVQGLAGFAAPGQALRPVRPGDMAVLVNTGREAMAVRAQLSA---RGVRSVYLSD 612

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            R  + D     +L          E+D      L +PL   S   +  +     E      
Sbjct: 613  RESVFDSPQAGELRCWLAACADPENDRLLRAALATPLLGLSWQALDCLNHDERE------ 666

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID- 527
                       +    + Y +                 +L A    ++ ++      +  
Sbjct: 667  --------WERRVMQFVGYQNCWRQQ----GVLPMLRRLLWAFDVPRRLLAADNARALTD 714

Query: 528  --VLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
               L E L      L  E      L E          T+K    ++ + V+++TVH +KG
Sbjct: 715  VLHLSELLQQASVHLDGEHALIRYLAEQCQAENPGGDTLKLRLESDADRVKVVTVHKSKG 774

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE P+VFL    +          +                             ++     
Sbjct: 775  LEYPLVFLPFACAFRAVSPRDIPLKFHDDDGQPRLEL----------TASDAAVQRADHE 824

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-----------QRTWYDMVYDSFHN 691
               E  R  YV +TRA   L +        EK +                   +      
Sbjct: 825  RLGEDLRKFYVALTRARYALWLGIAPLKELEKSAPGYLLGVGEPLAPGQLTQQLSVWCGA 884

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET----------IKQLMDEQKIPK 741
              +   +  T+        A       P    + R               +   + +   
Sbjct: 885  HSQRVPLPETDEARYRAVQASPSLGQEPPLPDIRRHRWRITSYSGLQRAPEGQFQAQRES 944

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS---DNQTFNRGLIIHKLLQVIFTLP- 797
                  +         +      +    L +        +    G  +H LL+       
Sbjct: 945  SENEAAEVQSARQETFSEPQDVAERLPPLPTGYDMYGFPRGAVPGSFLHGLLEWAGETGF 1004

Query: 798  ---EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----------MTTAMSC 843
                  R         +  +         L   +  LL  P+           +      
Sbjct: 1005 AALAADRDRVEDQVARRCNRQGWTPWIPMLTDWLMALLRQPLTLPGSSGGAVSLAGLTQY 1064

Query: 844  DSYSEVSVS-----------------------GKINCPKKDIIISGRIDQISISQQNIFI 880
                E   +                         +   + + ++ G ID +   Q   ++
Sbjct: 1065 QVEMEFWFALNQVDTQALDNQVRAATLAGEPRATLMREQLNGMLKGFIDLVFEHQGRYYV 1124

Query: 881  FEYKTHHHVPQEIE---------HIPYTHIAQLSIYEKILKDSYP--------NKSLVCL 923
             +YK++       +          + + +  QL++Y   L             ++ +   
Sbjct: 1125 LDYKSNWLGANAADYDGLRMAHAMLEHRYDLQLALYLFALHRLLKSRLPDYDYDRHVGGA 1184

Query: 924  LI-YVS------EPKVFIIPQNKLNKAFAEI 947
            L  ++              P   L +A   +
Sbjct: 1185 LYLFLRGSQASGGGVYAERPDRSLIEALDRL 1215


>gi|313812634|gb|EFS50348.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1]
          Length = 1072

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 149/995 (14%), Positives = 299/995 (30%), Gaps = 122/995 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         I    +  +       L KA           I +    L+    +   +
Sbjct: 122  AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K +   +   +   L    K+  D +  I    +     +  L  +       A Y+ 
Sbjct: 182  PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+ +L
Sbjct: 234  LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
               F    + H     + AVGD  Q+IY + GA    +L   R    +    G    ++ 
Sbjct: 291  ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  + R    I+   +               ++  +R   S   + G     +       
Sbjct: 345  LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
             Q     E       ++      +   +  A  +       TI         +  D  +L
Sbjct: 391  GQPLIAPEGNRRGEVTVAAYPDWAKECQTCADILVEAKERGTI--------ARWSDAAIL 442

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            VR+  D   +            + V   +   L     I  ++A  R ++ ++DD +   
Sbjct: 443  VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498

Query: 440  MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483
            +L +P    S DD+  +  +                      + + + +    G  + Q 
Sbjct: 499  LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558

Query: 484  VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             +K +   I      +  SP D    I           +   +      D LD   N   
Sbjct: 559  ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618

Query: 538  RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               ++    ++  +++ L         + RA + + + V + TVH AKGLE P+V + D 
Sbjct: 619  EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678

Query: 594  GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
               VF              ++PS        I  P S S  +  + +    + S   E  
Sbjct: 679  AQGVFPSTSTSDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737

Query: 649  RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA ++L++  H      +       + D++ D           +  + I   
Sbjct: 738  RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797

Query: 708  -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                 +         +    + +  +K       +  ++  P +
Sbjct: 798  TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADALLKDARRHIDLQDEVALPPR 857

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801
               ++   L+ +    +           ++    G   H+         + I      + 
Sbjct: 858  LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917

Query: 802  KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                    T+ A        +   L S+ +  E      A      + ++V         
Sbjct: 918  AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971

Query: 861  DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              ++ GR+D +     +     + ++KT      +          QLSIY      +   
Sbjct: 972  QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                +  +  +V   +             A I T 
Sbjct: 1024 DPSRVRAVFYHVGANETISAEPLLDADQVAAILTA 1058


>gi|309785129|ref|ZP_07679760.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 1617]
 gi|308926249|gb|EFP71725.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 1617]
          Length = 860

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 125/861 (14%), Positives = 276/861 (32%), Gaps = 133/861 (15%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             L        +       K++   L F+D++   +  L+  +    +   I       +
Sbjct: 4   RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAM 62

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDT   Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +
Sbjct: 63  IDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKAR 114

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                  T          L  ++RS   ++  V+K+FS  ++A    E     ++     
Sbjct: 115 SEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKN 164

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                       +      +  P  + W    +S       S +A+  A  I + +    
Sbjct: 165 QA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQ 214

Query: 362 -----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                + +    R ++A DI VLVR R++   +      L+     SV  ++R  + + L
Sbjct: 215 RGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETL 271

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
             ++++ L + +++ E + +    L + +   +  DI  +    +  E  ++ + +  + 
Sbjct: 272 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETL----NNDEHAWDAVVEEFDG 327

Query: 477 GISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
               ++   V+  +  L       S  +    +L    G ++            + E L 
Sbjct: 328 YRQIWRKRGVMPMLRAL------MSARNIAENLLATAGGERRLTDIL------HISELLQ 375

Query: 535 FT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                L +E      L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L 
Sbjct: 376 EAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLP 435

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
              +     +                      ++    N   + +   +     E  RLL
Sbjct: 436 FITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLL 482

Query: 652 YVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           YV +TR+     L +        +KK +       +       E      L   I     
Sbjct: 483 YVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCD 542

Query: 710 IAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINE 753
               W T         +   +   E   + +          +              D+  
Sbjct: 543 DDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMP 602

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
              ++ + + +  +    +     +  + G  +H L + +         N++        
Sbjct: 603 RLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVREKLELGG 661

Query: 814 KLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK-------- 859
             + ++    L   IT +L+ P+      ++   + +   E+     I+ P         
Sbjct: 662 --FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTL 719

Query: 860 ------------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE------- 894
                                ++ G ID +   +   ++ +YK++               
Sbjct: 720 IRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMA 779

Query: 895 --HIPYTHIAQLSIYEKILKD 913
                + +  Q  +Y   L  
Sbjct: 780 AAMQAHRYDLQYQLYTLALHR 800


>gi|309973348|gb|ADO96549.1| DNA helicase II [Haemophilus influenzae R2846]
          Length = 727

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 106/551 (19%), Positives = 192/551 (34%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 235 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 277 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           N    + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 NDAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 613 KLTISYAESRR 623


>gi|226226951|ref|YP_002761057.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
 gi|226090142|dbj|BAH38587.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
          Length = 820

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 121/787 (15%), Positives = 227/787 (28%), Gaps = 133/787 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    I K L   P          +   M  G   ++ + Q      +   I     
Sbjct: 85  AAGEMRARIAKFLGHEPKGMWCGTFHALGARMLRGVAPLVGREQNFTIYDEDDAIGAVKR 144

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           ++    L+      K    + I       K  L    +     RD F T           
Sbjct: 145 VMERRNLS-----PKEFAPKAILSAISSAKNALISPSEFARNARDTFATA---------- 189

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +    E A ++   + F+DL++     L+  +    +R    +   ++L+DE QD
Sbjct: 190 --VAGVYTDLEVALQQANAVTFDDLLVLPVRALETDEA---LRAHYQRRFRYLLVDEYQD 244

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+  ++ +              R +  VGD+ QSIY + GA+ + +L  +R     
Sbjct: 245 TNAAQYRFVQLM----------GGGYRNVMVVGDDDQSIYGWRGADIRNILDFERDFP-- 292

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    I+ L  ++RST ++L + + V +     +G +  +T               
Sbjct: 293 ------GARIVRLEENYRSTPNVLALANAVIAENTERRGKTLRATRP------------- 333

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            +  +     D   +       A  IA TI   +          
Sbjct: 334 ---------------AGEAVTLIEALDERDE-------ADFIAETILTRMSRS------- 364

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  +D  +L R    +  I    R       I           D   I+DLMA  + 
Sbjct: 365 --DLARRDCAILYRTNAQSRAIEDAFR----RRNIPYRLIGAVRFYDRREIRDLMAYLKL 418

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISK 480
           + +  DD +F   +  P     +  I  +  Q         E  T ++ +        + 
Sbjct: 419 VANPADDEAFRRAVNVPKRGLGDATIALLAEQAIAEGKPMLEMATRFDVLSGMRPAARAA 478

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR 538
            +     +  L  +A   +  +    ++   K      +    G E I+ + E +     
Sbjct: 479 LEDFGNLVQRLRTMAVDAAVDELLRELVQVIKYADHLRAEGPEGLERIENVREMIAGAAE 538

Query: 539 --NEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
              ++     L  L   L+             N + V  MT+H AKGLE P+VF+     
Sbjct: 539 VVADEGGEVGLTPLDHFLQSSTLVAGVDKLDPNADAVTCMTMHNAKGLEFPLVFVCGLED 598

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           +  EE  RL YVG+
Sbjct: 599 GLFP----------------------------------LARAAEDPAQLEEERRLFYVGI 624

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +          +         +     +     K     S  +  +  Y   
Sbjct: 625 TRAEEKLYLTCAEQRRRNGELMYSMPSRFLEVIKPSLAERGKTARAKSEGRSGFGGYGSG 684

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                        +           K+   P  +    P   +    ++      ++   
Sbjct: 685 YGSRRGNDDGWGRSGNSAGAGTGGAKRSVGPYGSAGYRPSG-SGVGANSGDIPFGKAPGG 743

Query: 776 DNQTFNR 782
            +    R
Sbjct: 744 FSTPARR 750


>gi|116253019|ref|YP_768857.1| ATP-dependent DNA helicase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257667|emb|CAK08764.1| putative ATP-dependent DNA helicase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 829

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 111/669 (16%), Positives = 206/669 (30%), Gaps = 113/669 (16%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+         DF DL+++   + +K      +  +      +IL+DE QDT+ 
Sbjct: 226 RDLYFAYQARLTTLNACDFGDLLMHPIAIFRKNPD---LLKEYHGRFRYILVDEYQDTNT 282

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +           P+ +  VGD+ QSIY + GAE   +LR ++        
Sbjct: 283 AQYMWLRLLAQRP------KGEPQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 331

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL     + +  E   G +  +                   
Sbjct: 332 ---GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDR----------------- 371

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                    S  +  +    + +DS  +       AR I   I  +     +        
Sbjct: 372 ---------SDPDDVKVQVHASWDSEEE-------ARAIGEEIEQLQRGKHLL------- 408

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D+ +LVR              L     ++          + L I+D MA  R +  
Sbjct: 409 ---NDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVAQ 461

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++ +P     +  +  +    R     +           +           
Sbjct: 462 ASDDLAFERIVNTPKRGLGDTTVRALHDYARARDIPMLAAAADIIETDELKPKARKALFD 521

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           VI+       + +     +    IL        + +    E    L+         E   
Sbjct: 522 VIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSME--- 578

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S + +   LE     +    + N + V IMT+H+AKGLE   VFL      +F H+  
Sbjct: 579 --SFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRS 636

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                ++  EE  RL YVG+TRA  +  
Sbjct: 637 LD--------------------------------ESGRAGLEEERRLAYVGITRAKHRCH 664

Query: 664 ICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           I   SN       + +    + D + ++      +++              ++ +     
Sbjct: 665 IWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFAN 724

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLSDNQT 779
           +      +  +    +                  Y  + P     +G+   +S  S+   
Sbjct: 725 SYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRTIEGELVAKSTSSEPSR 784

Query: 780 FNRG-LIIH 787
           F  G  + H
Sbjct: 785 FALGDRVFH 793


>gi|237740038|ref|ZP_04570519.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31]
 gi|229422055|gb|EEO37102.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31]
          Length = 735

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/545 (19%), Positives = 183/545 (33%), Gaps = 117/545 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y  +  ++  +DF D+++NT  LL+       I  KI ++  +I+IDE QDT+ +
Sbjct: 167 EVYEKYNRSLIESNAMDFSDILLNTYKLLQNSS----ILEKIQKKYKYIMIDEYQDTNNL 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +   +      
Sbjct: 223 QYKIIDLIAR----------KSANLCVVGDENQSIYGFRGANILNILNFENNYKN----- 267

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST+ IL   +++    ++++                        LW
Sbjct: 268 ---AKIIKLEENYRSTSTILDAANELIKNNKSSKDKR---------------------LW 303

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                 ++  + S       +I   I                 I
Sbjct: 304 -------TQNGKGDLIKVLVCDNARDEVS-------KIIDIIKENHQNG----------I 339

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             KD+ +L R    + +           Y I               IKD++A    I++ 
Sbjct: 340 PYKDMTILYRTNMQSRVFEEGL----LRYNIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 395

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
           +D+L+   ++  P     E  I KI    R     + + +            G  K   +
Sbjct: 396 QDELNLQRIVNVPKRKVGEKGIEKIIAFARENNLNLLDALSHIKDISGLTATGKEKLSEM 455

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQN 542
              I EL  ++   +       +L   K            +  I+ ++EF N  L  E  
Sbjct: 456 YDIIKELKDLSYSETASYIVETLLDKIKYIDYVKETYDDADARIENIEEFKNSILELE-- 513

Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +   +  L   LE               + +++MT+H +KGLE P+VFLV   +++F   
Sbjct: 514 NVVGVLRLSEYLENVSLVSATDDLEDEKDYIKLMTIHNSKGLEFPIVFLVGFENEIFPG- 572

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +   EE  RL YV +TRA  +
Sbjct: 573 ---------------------------------ARASFDEKEMEEERRLCYVALTRAEKK 599

Query: 662 LIICK 666
           L +  
Sbjct: 600 LYLSH 604


>gi|145631236|ref|ZP_01787009.1| DNA helicase II [Haemophilus influenzae R3021]
 gi|144983163|gb|EDJ90658.1| DNA helicase II [Haemophilus influenzae R3021]
          Length = 726

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 276 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFK 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 526 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTISYAESRR 622


>gi|291556400|emb|CBL33517.1| Superfamily I DNA and RNA helicases [Eubacterium siraeum V10Sc8a]
          Length = 792

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 92/551 (16%), Positives = 173/551 (31%), Gaps = 116/551 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L+ AK +   Y+   +    LDF+D+I+ T  L         +         +I++DE Q
Sbjct: 224 LSTAKTIYTDYQARLEAANALDFDDIIMLTVKLFAH---CPDVLSHWQNRFKYIMVDEYQ 280

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q++++  L E              L  VGDE QSIY F GA  + +L  +     
Sbjct: 281 DTNAAQYKLVSLLAE----------GSGNLCVVGDEDQSIYRFRGATIENILSFEEQFG- 329

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RSTA IL   + V +     +  +                  
Sbjct: 330 --------AEVIKLEQNYRSTATILKAANAVIANNTQHKDKN------------------ 363

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW  +      + +              + S+    A  I   I + +         
Sbjct: 364 ---LWSDLGDGDKIRMD--------------RFSTEQEEAMFITERILDGVKQGK----- 401

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  D ++L R    +  +            I           +   IKD++A   
Sbjct: 402 -----KYADHVILYRNNAQSRTVETTL----AKSGIPYKIIGGVRFYERKEIKDIIAYLC 452

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISK 480
            + +  D++ F  ++  P+       + ++         +  + + +       +     
Sbjct: 453 VLNNNYDEVRFGRIVNEPVRGIGAATLDELNRVVSGMGISYVQAMCESDSLPSLSRKAKV 512

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR 538
              + +   EL       S       IL     R+    +   G   ++ ++E  +  + 
Sbjct: 513 LVPLGETFSELSQHTDDISDGSLIDDILDRFGYREAMQRQGLEGEVRLENINELKSNMIT 572

Query: 539 NEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +    + L E + ++            A+ ++  +MT+H+AKGLE   VF+V     +
Sbjct: 573 FAKENEGAGLSEFLEQVALVSDMDSF--EADDDKAVLMTMHSAKGLEFDTVFVVGAEENI 630

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                              EE  RL YV +TR
Sbjct: 631 FPG----------------------------------YRSQFDPMEIEEERRLAYVAITR 656

Query: 658 ASDQLIICKHS 668
           A   L      
Sbjct: 657 AKRHLYFTCAK 667


>gi|291288294|ref|YP_003505110.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885454|gb|ADD69154.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809]
          Length = 703

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 104/660 (15%), Positives = 207/660 (31%), Gaps = 136/660 (20%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-- 94
           L++   N    +  + + +    +  +       S  L      +++     +       
Sbjct: 56  LAVTFTNKAAGEMKERILKLVDYEDADIWIGTFHSICL---RLLRRDPEKAGLEPGFGIL 112

Query: 95  DLKEKLKKSQDEFIKI---------RDRFNTYKMFKSTLA---------SLTLAKYLNAH 136
           D  ++L   +D    +         +   NT   +K+T            L +   + A 
Sbjct: 113 DQDDRLATIRDIIKNLNIDHKKYPPKKYMNTISTYKNTRPYVDGKKPEELLHMFADVFAA 172

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++  K   ++DF+D++  T  + K    +     ++     +IL+DE QDT+ IQ+  +
Sbjct: 173 YQQRLKDQKLVDFDDMLALTIRMFKNHPDTVGYYKEL---FRYILVDEYQDTNDIQFLFL 229

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                L  VGD+ QSIY + GA+ + +L    I         +   
Sbjct: 230 HLLAGLD----------GNLCVVGDDDQSIYGWRGADIRNILEFDTIF--------KGTK 271

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           II L  ++RS   IL   +K+    +  +G    +            + G VQ+      
Sbjct: 272 IIRLLENYRSRPQILQAANKLIRNNKLRKGKDLVAAR---------DEGGLVQVLPVSRE 322

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
             +                          A  +   ++  +             ++  +I
Sbjct: 323 TDE--------------------------AEFVIDQVNKYLEEG----------VKGSEI 346

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R    +         L N   ++              IKD+++  R   +  D +S
Sbjct: 347 AILYRTNGQSRNFEV----LLNRQGVAYKVIGSVGFYQRREIKDILSYLRLFDNPYDSVS 402

Query: 437 FVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQH-VIKYIHELIHI 494
           F   +K+P     +  I KI         ++ E +    +      +     Y+     +
Sbjct: 403 FRRSVKAPPRGIGDTTINKITDYASGNGISILEAVYAMNDQLRGAQKESFRGYLKIFNEL 462

Query: 495 AQFCSPHDFFTLIL---GAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQEL 550
           A      +    ++         +++      E     ++E  N  +  E ++  ++  +
Sbjct: 463 AACLKVSEMVKTVMDMTDYSGYVKRYEDEQEAERRISNIEELYNAAVSFENSNSDAM--I 520

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              L            A+   V++MT+H+AKGLE   VFL    + +F      +     
Sbjct: 521 TDFLAATAIATSSDEPADS-CVQLMTIHSAKGLEFESVFLTGLENGLFPLHGSLEEPDEL 579

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                                 RL YVG+TRA   L +   S  
Sbjct: 580 EEE----------------------------------RRLCYVGVTRAKQNLHMTYASTR 605


>gi|225075883|ref|ZP_03719082.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens
           NRL30031/H210]
 gi|224952829|gb|EEG34038.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens
           NRL30031/H210]
          Length = 666

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/611 (17%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 126 KEAIFKAQHQISLWKNDLKTPEDVVQTASNVWEQQTARVYASYQETLQSYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV             S              G  ++ + V  Q                 
Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQ----------------- 315

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 S    A  +   I    ++G D           Q  D  VL R      +    
Sbjct: 316 ------SEQHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      ++    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 361 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         +      Q  +  I      A+     +   
Sbjct: 417 LGKLNTYAHEHECSLYEAAQTEEALALLNHTNRQYLQAFMDMIESYRAKAETSEAGELIH 476

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + +   +  R  +    ++ EL   +       
Sbjct: 477 NLLKEIDYENHLLDNEEGKAGEIKWRNVTDLTGWLERKGEQDGKNIIELAQTIALMTLLE 536

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V++ T+H +KGLE P VFLV     +  H                     
Sbjct: 537 GK-SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 575

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCLKRKKQGTWQFPEP 620

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 621 SRFIDEMPQED 631


>gi|68171270|ref|ZP_00544672.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657941|ref|YP_507655.1| UvrD/Rep family helicase [Ehrlichia chaffeensis str. Arkansas]
 gi|67999317|gb|EAM85964.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599398|gb|ABD44867.1| helicase, UvrD/Rep family [Ehrlichia chaffeensis str. Arkansas]
          Length = 639

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 184/550 (33%), Gaps = 120/550 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           T+A      Y+E  K    +DF DL++    +   +     +     ++  +I++DE QD
Sbjct: 166 TVALSTYHIYQERLKFLNCVDFGDLLLYNIQIFTTQH---NVLSHYQEQFKYIMVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + IQ+  +R L + +          + L  VGD+ QSIYS+ GAE   +L+        
Sbjct: 223 INTIQYLWLRLLAQKY----------KNLCCVGDDDQSIYSWRGAEVGNILKFSDDFPN- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    I+ L  ++RST++IL V   + +  ++  G                     
Sbjct: 272 -------AKIVRLECNYRSTSNILDVATAIINNNKSRLGKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW    +    Q     + W S              A+ I   I N+           
Sbjct: 306 --LW---TTNEKGQKVNLMKFWDS-----------KAEAQYICEYIKNLHD--------- 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q  +  +LVR    T +           Y I           D   I+D++A  + 
Sbjct: 341 ---YQFNETAILVRAGFQTRIFEEYF----IKYSIPYKIIGGTRFYDRQEIRDIIAYLKI 393

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISK 480
            ++  +D++F  ++  P  +     + KI     +  T +           +  +     
Sbjct: 394 TVNPNNDIAFERIINKPKRHIGASTLNKIYLCAKQNNTYFLNAAKILISNNQLPDKASRS 453

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLR 538
             +++  I          S  +   +I           +    G   I+ + E  +  L 
Sbjct: 454 LNNLLNKIDSWKESLSSDSISNTVKMIAYDSGYVDMLENEGENGLARIENIKELFSALLS 513

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 + + E +  +     T   + + N N   IMT+H AKGLE P+VFL      VF
Sbjct: 514 F-----NDVNEFLEHISLVTETD--SLNYNDNYTYIMTLHAAKGLEFPIVFLPGWEEGVF 566

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                   ++       EE  RL YVG+TRA
Sbjct: 567 PH--------------------------------EKSLQDRTGEALEEERRLAYVGITRA 594

Query: 659 SDQLIICKHS 668
            +QL I   +
Sbjct: 595 REQLFISCVA 604


>gi|301026211|ref|ZP_07189677.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 196-1]
 gi|299879803|gb|EFI88014.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 196-1]
          Length = 1170

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 296  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 354

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 355  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 406

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 407  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 456

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 457  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 506

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 507  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 566

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 567  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 623

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 624  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 675

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 676  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 729

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 730  TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 776

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 777  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 836

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 837  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 896

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 897  SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 956

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 957  PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1013

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1014 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1073

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1074 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1110


>gi|296105303|ref|YP_003615449.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059762|gb|ADF64500.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 720

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/579 (17%), Positives = 183/579 (31%), Gaps = 116/579 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ IQ
Sbjct: 173 VYKAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNNIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L  D             +  VGD+ QSIY + GA+ + + R             
Sbjct: 230 YAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP------- 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST++IL+  + +        G                       LW 
Sbjct: 273 -GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------LW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +  S    F+ L +       AR +   I                   
Sbjct: 310 ------TDGVDGEPISIYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ------- 349

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                +L R    + ++            +           +   IKD ++  R I ++ 
Sbjct: 350 ---CAILYRSNAQSRVLEEAL----LQVSMPYRIYGGMRFFERQEIKDALSYLRLIANRN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q  +
Sbjct: 403 DDAAFERVVNTPTRGIGDRTLDVVRQASRDRQLTLWQACRELLQEKALAGRAASALQRFL 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE-Q 541
           + I  L         H     ++     R  +    G      I+ L+E +  T +    
Sbjct: 463 ELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYN 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                L  L + L        +       + V++MT+H+AKGLE P VF+V     +F  
Sbjct: 523 EEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                           EE  RL YVG+TRA  
Sbjct: 583 QMSLDEGG----------------------------------RLEEERRLAYVGVTRAMQ 608

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +L +          K         + +         +++
Sbjct: 609 KLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLR 647


>gi|292493733|ref|YP_003529172.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
 gi|291582328|gb|ADE16785.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4]
          Length = 715

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/684 (15%), Positives = 212/684 (30%), Gaps = 98/684 (14%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    +S  +             +  + + L            
Sbjct: 30  GAGSGKTRVLVHRIAWLIRSQGISPFSLLAVTFTNKAAGEMRGRIEELLGMPAGGMWMGT 89

Query: 66  FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L    Q+    ++    +   +   ++  L+    +  +   R         
Sbjct: 90  FHGLAHRLLRTHWQEAQLPQDFQILDSEDQYRLIRRILQNLNLDETRWPPRQAQWFINGR 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +       L     +   Y+   +++ ++DF +L++  ++L +       +
Sbjct: 150 KDEGLRPQHLEDDGNPYLRQQIRIYHSYQSHCERSGLVDFAELLLRAHELWRDHPA---L 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    HIL+DE QDT+ IQ+  +R L  +             LF VGD+ QSIY +
Sbjct: 207 LGHYQNRFTHILVDEFQDTNAIQYAWLRLLAGN----------QGKLFIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + + +  +               + L  ++RST  IL   + V +      G + 
Sbjct: 257 RGARIENIQQLTQDFPT--------VRTVRLEQNYRSTGTILAAANTVIAHNAQRLGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +       F+   +       A  +
Sbjct: 308 --------------------LW-------TDGEEGEPIQIYRAFNERDE-------AHFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                  +  DI VL R    +     +      +  I    +  
Sbjct: 334 VERIQAWQNQGE----------RRADIAVLYRSNAQSR----ILEAALVEAGIPYRVHGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IKD +A  R +  Q DD +F  ++ +P     E  + ++    R    ++++
Sbjct: 380 LRFFERAEIKDALAYLRLVAHQNDDSAFERVVNTPPRGIGERTLSQVREQARQAGLSLWQ 439

Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519
                   +  +    +  Q   + I  +    +  +  +   L+L         ++  S
Sbjct: 440 AATQLINTRTLSPRSANALQKFHRLIEGMATAIKALTLPEKMELVLEQSGLFDHYRKDRS 499

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
             G   +D L E +N   +  +    SL+ L   L                + V++MT+H
Sbjct: 500 EKGQSRLDNLKELINAASQF-KAEDPSLETLPEFLAHAALEAGDTQAEDREDCVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGLE P+VF+V     +F                                I ++    
Sbjct: 559 AAKGLEFPLVFIVGMEEGLFPSPQSLNEPRRLEEERRLCYVGMTRARYHLYLIHAEHRWL 618

Query: 639 LKKSTQEEYNRLLYVGMTRASDQL 662
               +  + +R LY   T  + +L
Sbjct: 619 YGSESYPKPSRFLYEIPTELTHEL 642


>gi|152978934|ref|YP_001344563.1| DNA-dependent helicase II [Actinobacillus succinogenes 130Z]
 gi|150840657|gb|ABR74628.1| DNA helicase II [Actinobacillus succinogenes 130Z]
          Length = 731

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 186/551 (33%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF ++++   +L   + +   I     +    IL+DE QDT+ IQ
Sbjct: 177 IYRIYQDTCNRAGLVDFAEILLRAYELFLHKPL---ILQNYQRRFGQILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E IR L                +  VGD+ QSIY + GA+ + + +      +      
Sbjct: 234 YEWIRLLAG----------KTGNVMIVGDDDQSIYGWRGAQIENIQKFLDDFSQ------ 277

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL   +++ S   N  G                       LW 
Sbjct: 278 --AQTIRLEQNYRSTGNILQAANQLISHNSNRLGK---------------------DLW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +     + F+ L +       A  ++  I   +               
Sbjct: 314 ------TEDDKGEPVGIYAAFNELDE-------ALFVSSQIKIWLEDGGKLD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +  VL R    + ++           +I           +   IKD +A  R + ++ 
Sbjct: 353 --ECAVLYRSNSQSRVLEEAL----IRAQIPYRIYGGMRFFERQEIKDALAYLRLVNNRH 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     E  +  +    R    T+++  Q      K A    +     +
Sbjct: 407 DDAAFERVVNTPTRGIGERTLETLRQFTRERQITLWQATQIAIQENKLAGRAATALMRFV 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L    +          ++      Q +    G +    I+ L+E ++      + 
Sbjct: 467 ELINSLAQETEEMPLFAQTDFVIKHSGLYQMYEQEKGEKGEVRIENLEELVSAAREFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + +L + L           +  H + V++MT+H+AKGLE P VF+V     +F  
Sbjct: 527 EEADDMSDLTAFLTHASLEAGEEQAGPHQSCVQMMTLHSAKGLEFPRVFMVGVEEGIFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              +   +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FMSLEEPGRLEEERRLAYVGVTRAKK 612

Query: 661 QLIICKHSNTS 671
           +L IC   +  
Sbjct: 613 KLTICYAESRR 623


>gi|330937394|gb|EGH41379.1| DNA-dependent helicase II [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 727

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 119/661 (18%), Positives = 214/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIINNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK  MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKSAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L         H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLAAKVMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|313792361|gb|EFS40460.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1]
 gi|313801691|gb|EFS42931.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2]
 gi|314962480|gb|EFT06580.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1]
 gi|315077696|gb|EFT49747.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2]
 gi|327453453|gb|EGF00108.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1]
          Length = 1072

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 148/995 (14%), Positives = 297/995 (29%), Gaps = 122/995 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         I    +  +       L KA           I +    L+    +   +
Sbjct: 122  AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K +   +   +   L    K+  D +  I    +     +  L  +       A Y+ 
Sbjct: 182  PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+ +L
Sbjct: 234  LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
               F    + H     + AVGD  Q+IY + GA    +L   R    +    G    ++ 
Sbjct: 291  ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  + R    I+   +               ++  +R   S   + G     +       
Sbjct: 345  LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
             Q     E       ++          +  A  +       TI         +  D  +L
Sbjct: 391  GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            VR+  D   +            + V   +   L     I  ++A  R ++ ++DD +   
Sbjct: 443  VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498

Query: 440  MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483
            +L +P    S DD+  +  +                      + + + +    G  + Q 
Sbjct: 499  LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558

Query: 484  VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             +K +   I      +  SP D    I           +   +      D LD   N   
Sbjct: 559  ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618

Query: 538  RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               ++    ++  +++ L         + RA + + + V + TVH AKGLE P+V + D 
Sbjct: 619  EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678

Query: 594  GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
               VF              ++PS        I  P S S  +  + +    + S   E  
Sbjct: 679  AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737

Query: 649  RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA ++L++  H      +       + D++ D           +  +     
Sbjct: 738  RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDTQAG 797

Query: 708  -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                 +         +    + +  +K       +  ++  P +
Sbjct: 798  TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801
               ++   L+ +    +           ++    G   H+         + I      + 
Sbjct: 858  LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917

Query: 802  KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                    T+ A        +   L S+ +  E      A      + ++V         
Sbjct: 918  AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971

Query: 861  DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              ++ GR+D +     +     + ++KT      +          QLSIY      +   
Sbjct: 972  QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                +  +  +V   +             A I T 
Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|319638182|ref|ZP_07992945.1| ATP-dependent DNA helicase [Neisseria mucosa C102]
 gi|317400455|gb|EFV81113.1| ATP-dependent DNA helicase [Neisseria mucosa C102]
          Length = 666

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 126 KEAIFKAQHQISLWKNDLKTPEEAVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV             S              G  ++ + V  Q                 
Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQ----------------- 315

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 S    A  +   I    ++G D           Q  D  VL R      +    
Sbjct: 316 ------SEQHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 361 LRS----ARIPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         +      Q  +  I      A+     +   
Sbjct: 417 LGKLNTYAHEHECSLYEAAQTEEALALLNHTNRQHLQAFMDMIESYRAKAEISEAGELIH 476

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + +   +     +    ++ EL   +       
Sbjct: 477 NLLREIDYENHLLANEEGKAGEIKWRNVTDLTGWLEHKGEQDGKNIIELAQTIALMTLLE 536

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V++ T+H +KGLE P VFLV     +  H                     
Sbjct: 537 GK-GEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 575

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCLKRKKQGTWQFPEP 620

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 621 SRFIDEMPQED 631


>gi|260581112|ref|ZP_05848933.1| DNA helicase II [Haemophilus influenzae RdAW]
 gi|260092241|gb|EEW76183.1| DNA helicase II [Haemophilus influenzae RdAW]
          Length = 727

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 235 YKWIKILAG----------KTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 277 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKK 612

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 613 KLTISYAESRR 623


>gi|121608662|ref|YP_996469.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121553302|gb|ABM57451.1| ATP-dependent DNA helicase UvrD [Verminephrobacter eiseniae EF01-2]
          Length = 793

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 103/574 (17%), Positives = 194/574 (33%), Gaps = 130/574 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YEE  ++  V+DF +L++ + +LL+  D    +R    +   HIL+DE QDT+ +
Sbjct: 182 EIYQLYEEQCQREGVVDFGELMLRSYELLRDNDH---LRAHYQRRFAHILVDEFQDTNQL 238

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  +       + +  ++ AVGD+ QSIY+F GA    +    R    +    
Sbjct: 239 QYAWLKQLAGNVV--DGRYQAHGSVLAVGDDDQSIYAFRGARVGNMADFVREFGVQ---- 292

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  ++RS + IL   + + S   +  G +  +T          G+   V   
Sbjct: 293 ----QQIKLEQNYRSYSHILDSANALISHNSSRLGKNLRTTQG-------PGEPVRV--- 338

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                     + SS    A+ +   I  ++ +D           
Sbjct: 339 -------------------------YEASSDLAEAQWMVDEIKQLLRSD---------GF 364

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + ++I VL R    + +I         +  +           +   IK  +A  R + + 
Sbjct: 365 EHREIAVLYRSNAQSRVIESAL----FNAGVPYRVYGGLRFFERAEIKHALAYLRLLENP 420

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
           +DD SF  ++  P        I  +    R    ++Y+ +              +  +  
Sbjct: 421 QDDTSFARVVNFPPRGIGARSIEVLQDAARAAGCSLYDGVSAVPGKAGINLGAFVALVDG 480

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRN---------- 539
           L    +  +       +L + +    F +   G + I+ L E +N               
Sbjct: 481 LRAQTRGLNLRSIIEQMLESTRLVAHFCTEKEGADRIENLQELINAAESFVTQEGFGRDA 540

Query: 540 ----------------------EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                                 + ++  +L  L + L             A  N V++MT
Sbjct: 541 VALPLDEHGGAAPPKPPMPGIVDADTGETLSPLAAFLTHAALEAGDNQAQAGQNAVQLMT 600

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           VH +KGLE   VF+      +F H++                                  
Sbjct: 601 VHASKGLEFDGVFIGGMEEGLFPHEN---------------------------------- 626

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              ++ T EE  RL+YV +TRA  +L +      
Sbjct: 627 AASERDTLEEERRLMYVAITRARRRLYLSHSQTR 660


>gi|319776569|ref|YP_004139057.1| DNA helicase II [Haemophilus influenzae F3047]
 gi|319897345|ref|YP_004135541.1| DNA helicase ii [Haemophilus influenzae F3031]
 gi|317432850|emb|CBY81215.1| DNA helicase II [Haemophilus influenzae F3031]
 gi|317451160|emb|CBY87393.1| DNA helicase II [Haemophilus influenzae F3047]
          Length = 727

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 235 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 277 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 613 KLTISYAESRR 623


>gi|254697750|ref|ZP_05159578.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260762180|ref|ZP_05874523.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260672612|gb|EEX59433.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 853

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 195/694 (28%), Gaps = 151/694 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAELDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             + +    E    ++ L E +      E         L   LE     +    + + + 
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYES--------LRGFLEHVTLVMDAEQNEDMDA 625

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V I+T+H+AKGLE   VFL      +F H+                              
Sbjct: 626 VNIITLHSAKGLEFETVFLPGWEEGLFPHQR----------------------------- 656

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +S  EE  RL YVG+TRA   L I   SN                      
Sbjct: 657 ---ALDEGGRSGLEEERRLAYVGVTRAKKNLHIWFVSNRR--------------IHGMWQ 699

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                +          E    E +         +                      +N  
Sbjct: 700 STIPSRFLEELPEAHVEVAELEGNYGGYGGGYGQSRFDKADPFQNSYSTPGWQRAQQNRS 759

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +       S   ++ +              RG +
Sbjct: 760 DATRNNWGSRSGSRVERIGYGETDSGFGAGRGSV 793


>gi|238897902|ref|YP_002923581.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465659|gb|ACQ67433.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 731

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 112/554 (20%), Positives = 192/554 (34%), Gaps = 117/554 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++   +L         I     Q  +HIL+DE QDT+ 
Sbjct: 171 RDIYQSYQEATDRAGLVDFSELLLRAYELWLNH---TNILDHYQQRWSHILVDEFQDTNT 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+  IR+L E              +  VGD+ QSIY + GA+   +    +  +     
Sbjct: 228 VQYAWIRALAE----------KRAKVMIVGDDDQSIYGWRGAQVGNIQSFLKDFE----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L  ++RST  ILT  + + +  E   G +                     L
Sbjct: 273 ---GAETVRLEQNYRSTPHILTAANTLIANNEGRMGKN---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W        +Q   +  S    F+ L +       AR +A+ I                 
Sbjct: 309 W-------TAQKEGEPISLYHAFNELDE-------ARFVAHQIKKWHEKGG--------- 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            Q KD  +L R    + ++            I           +   IKD +A  R I +
Sbjct: 346 -QLKDCAILYRSNAQSRVLEEAF----LQGNIPHRIYGGHRFFERQEIKDALAYLRLISN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------FQH 483
           + DD SF  ++ +P     E  +  +    R   +T++E IQ   +  I         + 
Sbjct: 401 RHDDASFERVINTPARGIGERTLSVLRQAARDREKTLWETIQILLHEKILAGRAASGLRR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
            I+ I  L +       H     ++        +    G       + L+E +N T + +
Sbjct: 461 FIELIDSLAYETSEMPLHLQTDRVIKDSGLWLMYQEEKGERAQGRIENLEELVNATQQYD 520

Query: 541 --QNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             Q    +L  L + L +      +    A+ + V++MT+H+AKGLE   +F+V     +
Sbjct: 521 YRQYEDDTLSPLQAFLSDAVLEAGEGQADASQDSVQMMTLHSAKGLEFFKIFIVGMEEGM 580

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F  K                                           EE  RL YVG+TR
Sbjct: 581 FPSKMALNESG----------------------------------RLEEERRLAYVGLTR 606

Query: 658 ASDQLIICKHSNTS 671
           A  +L +       
Sbjct: 607 AMKELTLSYAERRR 620


>gi|157372049|ref|YP_001480038.1| exonuclease V subunit beta [Serratia proteamaculans 568]
 gi|157323813|gb|ABV42910.1| exodeoxyribonuclease V, beta subunit [Serratia proteamaculans 568]
          Length = 1183

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 139/967 (14%), Positives = 311/967 (32%), Gaps = 137/967 (14%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
            E I   +  +    ++      +L  ++G       ++ L    Q               
Sbjct: 224  EQIVARIDAIKAQWLAAAGDLEALISQSGVDKRSYSSKHLPNWLQKVGEWVVLETQDYQL 283

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
              +    +++++  +  K  P              ++ D   T +      A   +   +
Sbjct: 284  PKELDKFRQSVLLDKTKKGEPPH----HALFVAIDELFDEPLTLRDLIMARALSEIRLSI 339

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                ++ K++   L F+DL+   +  L+  +    +   I Q     +IDE QDT   Q+
Sbjct: 340  ----QQEKRQRAELGFDDLLSRLDSALQ-SEGGERLAQAIRQRYPVAMIDEFQDTDPQQY 394

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             + + L                L  +GD KQ+IY+F GA+    +R +       T    
Sbjct: 395  RIFQKLY--------VGRPECGLLLIGDPKQAIYAFRGADIFTYMRARSEVSAHYT---- 442

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RS+  ++  V+ +F+  E      +     +             +    
Sbjct: 443  ------LETNWRSSPAMVNSVNHLFAQVEKPFLFGQIPFIEVA----------AAEKNRG 486

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKK 368
            +  +  +Q +P  + W    + +       ++AR  A  I + +         +    K+
Sbjct: 487  LAFELQNQPHPAMQFWLQQGEGVGVSEYQQLMARLCATQIRDWLSAGQNQQAWLVDGEKR 546

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R ++A DI VLVR R +  L+      L      SV  ++R  + D    KDL+ L + +
Sbjct: 547  RAVEASDITVLVRSRNEAALVRDALSAL---AIPSVYLSNRDSVFDTPEAKDLLWLLQAV 603

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L+ E + +    + + L       +  +       + +     K+    +   + V+  +
Sbjct: 604  LAPEQERTLRSAMATGLMGLDAQALDGLNRDERAWDALVNEFDKYRTLWLR--RGVLPML 661

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYS 545
             E+++             +L +  G ++            L E L      L +E     
Sbjct: 662  REVMNQRH------LAENLLASLGGERRLTDVM------HLGELLQEASAQLDSEHALVR 709

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             L + I++  +     +    ++ + V+++T+H +KGLE  +V+L   G+     + +  
Sbjct: 710  WLAQQIAQPNRQSDNQQLRLESDRHLVQVITIHKSKGLEFDLVWLPFVGNFRQQQQVLYH 769

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662
                              Q+    N     I+  ++    E  RLLYV +TR+       
Sbjct: 770  DR-------------HSFQALLDLNADEQSIEWAEEERLAEDLRLLYVALTRSVYHCSIG 816

Query: 663  ---IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-------DEWIAY 712
               +I        +   ++     +V      D    +  L             +     
Sbjct: 817  IAPLIQGTRKKQGDSDLHRSALGYLVQAGQAGDAAYLQQCLQQLAVDGVALSLVESLDEQ 876

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKK-----LFSPIKNDINEPYILNPSTIDTKGK 767
             W    P+ T L  +  ++Q+ D  ++          + +  D+     ++ +    +  
Sbjct: 877  PWQPQTPDLTELSAKHFMRQVQDFWRVTSYTGLQQHGTSLMQDLLPRLDVDAAGEQAQDS 936

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                +  +  +    G  +H L + I    +   + ++     +    +       LL  
Sbjct: 937  EPALTPHTFPRGAGPGTFLHSLFETI-DFTQPLDEAWLLEQLQQQG--FGEHWQPILLAW 993

Query: 828  ITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKKDI------------------- 862
            +  LL  P+      ++        +E+     I    +                     
Sbjct: 994  MQVLLNTPLNDTGVALSALAPQHKQAELQFYLPIEQLLQARELDKLVKSYDPLSARCPEL 1053

Query: 863  -------IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSI 906
                   ++ G ID +   Q   ++ +YK++        +           + +  Q  +
Sbjct: 1054 DFQQVQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTQPAMEQAMAEHRYDLQYQL 1113

Query: 907  YEKILKD 913
            Y   L  
Sbjct: 1114 YTLALHR 1120


>gi|241663638|ref|YP_002981998.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240865665|gb|ACS63326.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 786

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 116/715 (16%), Positives = 222/715 (31%), Gaps = 153/715 (21%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W +   +VS                +  + Q +   +        
Sbjct: 28  GAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTNKAAKEMTARLQAMLPINTRAMWIGT 87

Query: 66  FS----LLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F      L          PQ    + TQ+       L + L         K  Q      
Sbjct: 88  FHGLCNRLLRAHFRDAGLPQTFQILDTQDQLSAVKRLLKSLNIDDEKYPPKNVQYFINGA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++       +           L A Y+   ++  V+DF +L++   +LL+  D    IR
Sbjct: 148 KEQGLRAGDLEIANEYDRRMADLYAAYDAQCQREGVVDFAELLLRCYELLRYNDA---IR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               +   HIL+DE QDT+ +Q+  ++ L      G     +P  +FAVGD+ QSIY+F 
Sbjct: 205 AHYQRRFKHILVDEFQDTNKLQYAWLKILAGLGEPGV----TPNAIFAVGDDDQSIYAFR 260

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    ++  +R  +            I+L  ++RS   IL   + + S      G +  
Sbjct: 261 GANVGNMVDFEREFRVE--------HRIKLEQNYRSHGHILDTANHLISHNTRRLGKNLR 312

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V++++      +                          A  I 
Sbjct: 313 TD---------AGHGEPVRVYQAATDGQE--------------------------AGWIV 337

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I + I T           +   +I +L R    + +I            I        
Sbjct: 338 DEIRDRIATG----------MSRSEIAILYRSNAQSRVIEHAL----FSAGIPYKVYGGL 383

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469
              +   IK  +A  + + + ++D +F  ++  P        + ++    R    ++   
Sbjct: 384 RFFERAEIKHALAYLQLLENPDNDAAFGRVVNFPARGVGARSLEQLQDAARLYGISLAAA 443

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528
           +        +K    ++ I ++    +  +  +    ++ A      +     G + I+ 
Sbjct: 444 VPYLTGAAGTKLSAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQGEKEGQDRIEN 503

Query: 529 LDEFLNFTLRNEQNS-------------------------------------YSSLQELI 551
           L E +                                                + +  L+
Sbjct: 504 LQELVTAAQAFVAEEGYGVDAIATALPVRHDAMLRIEGGETDTASELVTDETPAEMTPLV 563

Query: 552 SELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + L             A  + V++MTVH AKGLE  VVF+      +F H++        
Sbjct: 564 AFLTHASLEAGDNQAQAGQDAVQMMTVHAAKGLEFHVVFITGLEEGLFPHENS------- 616

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                       ++K   EE  RL+YV +TRA ++L + 
Sbjct: 617 ---------------------------QMEKDGLEEERRLMYVAITRARERLYLS 644


>gi|319943193|ref|ZP_08017476.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia
           mirabilis ATCC 51599]
 gi|319743735|gb|EFV96139.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia
           mirabilis ATCC 51599]
          Length = 808

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 113/774 (14%), Positives = 217/774 (28%), Gaps = 151/774 (19%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   +   F ++ S             +  +  +  P   +            ++
Sbjct: 97  LRAHHRDAGLPASFQIMDSADQLGAIKRLLRGLNVDDQQFQPKAVQHF------INGSKE 150

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                       +       L   Y+E  ++  V+DF +L++   +LL++      +R  
Sbjct: 151 AGLRAADVSGHDSHSRRLAELYGAYDEQCQREGVVDFAELLLRAYELLQRN---QPLRQH 207

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             Q   HILIDE QDT+ +Q+  +  L               +LFAVGD+ QSIY+F GA
Sbjct: 208 YQQRFRHILIDEFQDTNDLQYRWLTLLAG----------GGASLFAVGDDDQSIYAFRGA 257

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R              +I L  ++RS A IL   + +     +  G      
Sbjct: 258 NVGNMAAFERDY--------AGPQLIRLEQNYRSHAHILDSANHLIRQNAHRLGK----- 304

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW       D+        + ++ D           A+ +   
Sbjct: 305 ----------------DLW------TDAGEGEPVRIFAAFSDRDE--------AQWLLEE 334

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  ++             +   +I +L R    + ++            +          
Sbjct: 335 IRALVADG----------MSRSEIAILYRSNAQSRILEHTL----FSAGVPYKVYGGLRF 380

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471
            +   IK  +A  R I + +DD +F+ ++  P        +  +  T R    ++Y  + 
Sbjct: 381 FERAEIKHALAYLRLIENPDDDGAFLRVVNFPARGIGARTLENLQDTARTHGISLYRAVP 440

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLD 530
             +  G S+    +  I  +   +      +    ++G       +   R G E I+ L 
Sbjct: 441 MTSGAGGSRLLQFVMLIELMRQNSARLPLSESIDDVIGRSGLMTHYEQEREGQERIENLK 500

Query: 531 EFLNFTLRNEQNSYSS------------------------------------LQELISEL 554
           E +N  L  +                                          +  L + L
Sbjct: 501 ELVNAALAFQAEGGIDAATPASVGLAGTTAGTALPAASDGAVLPADAAPVVQVSPLAAFL 560

Query: 555 EQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                           + V++MTVH AKGLE   VF+      +F H++           
Sbjct: 561 AHASLESGDGQAEEGVDAVQLMTVHAAKGLEFETVFVTGLEEGLFPHENSASDPGG---- 616

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL+YV MTRA  +L +         
Sbjct: 617 ------------------------------LEEERRLMYVAMTRARRRLYLSLAQTRMLH 646

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            ++        + +      +      + S      +  +  +                 
Sbjct: 647 GQTRYNMQSRFLSELPERSLKWLSEMPSASAQGSLGLGADRGSRG--YYGGGGYGGGGYG 704

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
                        + + ++E    +                S      R    H
Sbjct: 705 SGSGNGGGNWRPRLDSAVHERNRQSGWVRPADPGIPASGDASGKARAGRDSRYH 758


>gi|116053593|ref|YP_793920.1| DNA-dependent helicase II [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588814|gb|ABJ14829.1| DNA helicase II [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 728

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 103/591 (17%), Positives = 192/591 (32%), Gaps = 116/591 (19%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +       L     +   YE A  +  V+DF +L++   DL +       +  
Sbjct: 154 EGLRPQHIQPGGDLFLATMLKIYEAYEAACARAGVIDFSELLLRALDLWRDHPG---VLE 210

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +   HIL+DE QDT+ +Q+  +R L +             +L  VGD+ QSIY + G
Sbjct: 211 HYQRRFRHILVDEFQDTNAVQYAWLRILAK----------GGDSLMVVGDDDQSIYGWRG 260

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + + +                 +I L  ++RSTA IL   + + +  +   G     
Sbjct: 261 ARIENIQQFSDDF--------ADAEVIRLEQNYRSTASILKAANALIANNQGRLGK---- 308

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            +LW           + +  S  + F+   +       AR +  
Sbjct: 309 -----------------ELW-------TDGEDGESLSLYAAFNEHDE-------ARYVVE 337

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           +I + +             +   +I +L R    + ++       K    I         
Sbjct: 338 SIESALRGG----------LARSEIAILYRSNAQSRVLEEALLREK----IPYRIYGGQR 383

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470
             +   IK+ MA  R +  + +D +   ++  P     E  +  I    R    +++E I
Sbjct: 384 FFERAEIKNAMAYLRLLDGRGNDAALERVVNVPARGIGEKTVESIREFARGNDVSMWEAI 443

Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521
           +             S     ++ I  L         H     ++         ++     
Sbjct: 444 RLMIANKVLPGRAASALTGFVELIENLSAKVMDMPLHLMTQTVIEQSGLISYHKEEKGEK 503

Query: 522 GNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
           G   ++ L+E ++     E +     L  L + L        +    A+ + +++MT+H+
Sbjct: 504 GQARVENLEELVSAARAFENSEEEEDLTPLQAFLSHASLEAGETQADAHEDSIQLMTLHS 563

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VFLV     +F HK                                      
Sbjct: 564 AKGLEFPLVFLVGMEEGLFPHKMSL----------------------------------E 589

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           +    EE  RL YVG+TRA  +L++                    + +   
Sbjct: 590 ESGRLEEERRLAYVGVTRAMQRLVLTYAETRRLYGSETYNKVSRFIREIPP 640


>gi|314967655|gb|EFT11754.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1]
          Length = 1072

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 149/995 (14%), Positives = 299/995 (30%), Gaps = 122/995 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         I    +  +       L KA       +   I +    L+    +   +
Sbjct: 122  AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMEPTFIAQAVVKLAGAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K +   +   +   L    K+  D +  I    +     +  L  +       A Y+ 
Sbjct: 182  PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+ +L
Sbjct: 234  LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
               F    + H     + AVGD  Q+IY + GA    +L   R    +    G    ++ 
Sbjct: 291  ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  + R    I+   +               ++  +R   S   + G     +       
Sbjct: 345  LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
             Q     E       ++          +  A  +       TI         +  D  +L
Sbjct: 391  GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            VR+  D   +            + V   +   L     I  ++A  R ++ ++DD +   
Sbjct: 443  VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498

Query: 440  MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483
            +L +P    S DD+  +  +                      + + + +    G  + Q 
Sbjct: 499  LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558

Query: 484  VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             +K +   I      +  SP D    I           +   +      D LD   N   
Sbjct: 559  ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618

Query: 538  RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               ++    ++  +++ L         + RA + + + V + TVH AKGLE P+V + D 
Sbjct: 619  EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678

Query: 594  GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
               VF              ++PS        I  P S S  +  + +    + S   E  
Sbjct: 679  AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737

Query: 649  RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA ++L++  H      +       + D++ D           +  + I   
Sbjct: 738  RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797

Query: 708  -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                 +         +    + +  +K       +  ++  P +
Sbjct: 798  TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801
               ++   L+ +    +           ++    G   H+         + I      + 
Sbjct: 858  LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917

Query: 802  KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                    T+ A        +   L S+ +  E      A      + ++V         
Sbjct: 918  AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971

Query: 861  DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              ++ GR+D +     +     + ++KT      +          QLSIY      +   
Sbjct: 972  QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                +  +  +V   +             A I T 
Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|153002398|ref|YP_001368079.1| DNA-dependent helicase II [Shewanella baltica OS185]
 gi|151367016|gb|ABS10016.1| DNA helicase II [Shewanella baltica OS185]
          Length = 722

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 96/551 (17%), Positives = 185/551 (33%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     +         HIL+DE QDT+ IQ
Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQDRFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L                +  VGD+ QSIY + GA+ + + R  +          
Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPT------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L  ++RS  +IL   + + +      G                      +LW 
Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + +    S    F+ + +       AR I   I++                 
Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            ++          +   IKD M   R I +++
Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKD 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +  T R    T+++   +       A    +  +  +
Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQHELTLWQASVRLLDEKVLAGRAANSVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-Q 541
             I  +    Q    +     ++ A   +  + +  G +     + L+E +      E  
Sbjct: 463 DLIMTMREDTQDMVLYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFELP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL   L        +    A  + V++MT+H+AKGLE  +VF+      +F  
Sbjct: 523 EELEDMGELNGFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                      +    +E  RL YVGMTRA +
Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 609 KLYITYAESRR 619


>gi|16273110|ref|NP_439344.1| DNA-dependent helicase II [Haemophilus influenzae Rd KW20]
 gi|1174922|sp|Q02322|UVRD_HAEIN RecName: Full=DNA helicase II
 gi|1574115|gb|AAC22841.1| DNA helicase II (uvrD) [Haemophilus influenzae Rd KW20]
          Length = 727

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 235 YKWIKILAG----------KTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 277 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKK 612

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 613 KLTISYAESRR 623


>gi|315655665|ref|ZP_07908563.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333]
 gi|315489729|gb|EFU79356.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333]
          Length = 877

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 104/707 (14%), Positives = 199/707 (28%), Gaps = 144/707 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L   ++                 + ++ ++L   +        
Sbjct: 85  GAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLVGNAAKYMWVST 144

Query: 66  FSLLSSFFL---------TQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F       L         T+ F+      T+ +  +    +         K    +  + 
Sbjct: 145 FHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIKGRGLDPKRFPPKSFAAKISQA 204

Query: 111 RDRF---NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++       + +         L   +   Y++  ++    DF+DLI +T  L K      
Sbjct: 205 KNELITPEVFAVGAGVDKMSQLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPD-- 262

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I  +   +  H+L+DE QDT+  Q+E+IR LT            P  L  VGD  QSIY
Sbjct: 263 -ILARYRAKFRHVLVDEYQDTNPAQYELIRLLT---VGATGDAQPPAELTVVGDSDQSIY 318

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA  + +   +              + + L  ++RST  IL+V + + S  E  +  
Sbjct: 319 AFRGATIRNIEEFESDFP--------GATTVYLEQNYRSTGTILSVANAIISENEGRRKK 370

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +  +      ++                                    L    +    A 
Sbjct: 371 NLWTDAGQGMQAV-----------------------------------LYAADTDRDEAA 395

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   +  +    +             +  V  R    +  +  +         I     
Sbjct: 396 FIVRELQKLRQEGS----------SWDEFAVFYRTNAQSRSLEEML----TREGIPYRVV 441

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC---------- 457
                 D   IKD +A      +  DD + + +L  P     +  +  I           
Sbjct: 442 GGTKFYDRREIKDAIAYLCAAANPADDGNLLRVLNEPKRGLGDKAVQTIREVSLSENLDF 501

Query: 458 -TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQ 515
                +      +    +    +     +  +  +  + A      +     L       
Sbjct: 502 GQALRQFLPGGTHHGDLSAKASAGITEFVGVLDAMRALDAAGAPLDEILDTALEDSGYLP 561

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSAN--- 568
           +       +    ++ L E  N       +   + L + +  +       +   +A    
Sbjct: 562 KLRKSNDPQDDARVENLAELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAGQPE 621

Query: 569 ----------HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                       EV +MTVHTAKGLE   VF+      +F H    +             
Sbjct: 622 RPADPVHPAAPPEVTLMTVHTAKGLEFNTVFVTGMEDGLFPHSRSLESP----------- 670

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                      E  RL YV +TRA  +L + 
Sbjct: 671 -----------------------QDIAEERRLAYVAVTRARQRLYLT 694


>gi|16130724|ref|NP_417297.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
            K-12 substr. MG1655]
 gi|89109603|ref|AP_003383.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
            K-12 substr. W3110]
 gi|157162272|ref|YP_001459590.1| exonuclease V subunit beta [Escherichia coli HS]
 gi|170018937|ref|YP_001723891.1| exonuclease V subunit beta [Escherichia coli ATCC 8739]
 gi|170082388|ref|YP_001731708.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
            K-12 substr. DH10B]
 gi|188492424|ref|ZP_02999694.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 53638]
 gi|238901955|ref|YP_002927751.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
            BW2952]
 gi|256019384|ref|ZP_05433249.1| exonuclease V subunit beta [Shigella sp. D9]
 gi|300950553|ref|ZP_07164460.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 116-1]
 gi|300958138|ref|ZP_07170295.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 175-1]
 gi|119668|sp|P08394|EX5B_ECOLI RecName: Full=Exodeoxyribonuclease V beta chain; AltName:
            Full=Exodeoxyribonuclease V 135 kDa polypeptide
 gi|56966626|pdb|1W36|B Chain B, Recbcd:dna Complex
 gi|56966629|pdb|1W36|E Chain E, Recbcd:dna Complex
 gi|266618790|pdb|3K70|B Chain B, Crystal Structure Of The Complete Initiation Complex Of
            Recbcd
 gi|266618793|pdb|3K70|E Chain E, Crystal Structure Of The Complete Initiation Complex Of
            Recbcd
 gi|5923820|gb|AAD56369.1|AF179304_1 RecB2109 [Escherichia coli]
 gi|42682|emb|CAA28250.1| unnamed protein product [Escherichia coli]
 gi|882712|gb|AAB40467.1| exonuclease V subunit [Escherichia coli str. K-12 substr. MG1655]
 gi|1789183|gb|AAC75859.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
            K-12 substr. MG1655]
 gi|85675636|dbj|BAE76889.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
            K12 substr. W3110]
 gi|157067952|gb|ABV07207.1| exodeoxyribonuclease V, beta subunit [Escherichia coli HS]
 gi|169753865|gb|ACA76564.1| exodeoxyribonuclease V, beta subunit [Escherichia coli ATCC 8739]
 gi|169890223|gb|ACB03930.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli str.
            K-12 substr. DH10B]
 gi|188487623|gb|EDU62726.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 53638]
 gi|238861053|gb|ACR63051.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
            BW2952]
 gi|260448132|gb|ACX38554.1| exodeoxyribonuclease V, beta subunit [Escherichia coli DH1]
 gi|300315160|gb|EFJ64944.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 175-1]
 gi|300450121|gb|EFK13741.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 116-1]
 gi|315137424|dbj|BAJ44583.1| exonuclease V subunit beta [Escherichia coli DH1]
 gi|323935821|gb|EGB32124.1| exodeoxyribonuclease V [Escherichia coli E1520]
 gi|323941572|gb|EGB37753.1| exodeoxyribonuclease V [Escherichia coli E482]
 gi|332102855|gb|EGJ06201.1| exonuclease V (RecBCD complex) beta subunit [Shigella sp. D9]
          Length = 1180

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 967  PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|167855351|ref|ZP_02478118.1| DNA-dependent helicase II [Haemophilus parasuis 29755]
 gi|167853499|gb|EDS24746.1| DNA-dependent helicase II [Haemophilus parasuis 29755]
          Length = 727

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 110/581 (18%), Positives = 193/581 (33%), Gaps = 121/581 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               Y+EA  +  +LDF +L+I   +L K   +   I  +  Q   HILIDE QDT+ IQ
Sbjct: 178 FYQIYQEASDRAGLLDFAELLIRAYELFKHNPL---ILQRYQQRFQHILIDEFQDTNNIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++I  L                +  VGD+ QSIY + GA+ + + R             
Sbjct: 235 YDLIHLLAG----------KTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYDN------ 278

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL   + + S  +N  G +                     LW 
Sbjct: 279 --AQTIRLEQNYRSTGHILNSANALISNNDNRLGKN---------------------LW- 314

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + +         F+ L +       AR +A  I      +            
Sbjct: 315 ------TDKGDGDPVDIYCAFNELDE-------ARFVASQIKQWKEDEG----------D 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                VL R    + +I            I           +   IKD +A  R I +++
Sbjct: 352 FNQCAVLYRGNAQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 407

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ IQ        +    S     +
Sbjct: 408 DDAAFERVVNTPPRAIGDRTLDILRQLTRTRQITLWQAIQVAVQEEHLSGRSASALLRFV 467

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--- 539
           + I+ L    +     +    ++      + +    G +    I+ L+E +  T +    
Sbjct: 468 ELINALEQETEEMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATRQFVKP 527

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E    + L   ++             S + + V +MT+H+AKGLE P VF+V     +F
Sbjct: 528 DEAEEMTDLTAFLTHASLEAGET--QASLHQDYVELMTLHSAKGLEFPRVFIVGVEEGIF 585

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                     +   +E  RL YVG+TRA
Sbjct: 586 PSGMSFD-----------------------------------EGRLQEERRLAYVGITRA 610

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +L I    +     K  +      + +      R  +++
Sbjct: 611 KKKLTISYAESRRLYGKEERHLPSRFIGELPEEHIREVRLR 651


>gi|87199314|ref|YP_496571.1| ATP-dependent DNA helicase Rep [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134995|gb|ABD25737.1| ATP-dependent DNA helicase, Rep family [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 765

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 105/646 (16%), Positives = 189/646 (29%), Gaps = 118/646 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           +   A Y+   ++    DF DL+++  ++ ++      +     Q   ++++DE QDT+ 
Sbjct: 183 QRFYALYQNRLRELNACDFGDLLMHMLNIFRRE---REVLEMWQQRFKYVMVDEYQDTNA 239

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+  +R L ++           + +  VGD+ QSIYS+ GAE   +LR ++        
Sbjct: 240 VQYLWLRLLAQN----------RKNICVVGDDDQSIYSWRGAEVANILRFEKDFP----- 284

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I L  ++RST  IL     + +      G +                     L
Sbjct: 285 ---GAKVIRLEQNYRSTPHILGAASGLIAENSERLGKT---------------------L 320

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W                 W +  +           ARRI   I  +              
Sbjct: 321 W---TEVDGGDKVRVIGVWDAPEE-----------ARRIGDEIERLEREGAPLDR----- 361

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                + +LVR +  T  I            +       F   +   I+D +A  R I S
Sbjct: 362 -----VAILVRAQFQTRTIEDRF----IQIGLGYRIVGGFRFYERAEIRDALAYLRIIAS 412

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
            +DDL+F  +  +P     +  + K+    R  +  +           +           
Sbjct: 413 PQDDLAFERIYNTPKRGLGDKTLEKLHRHARARSIPLSLASVEILDTDELPARARGTLAA 472

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +++        ++   P +    IL          +    E    L+         E+  
Sbjct: 473 LMRDFGRWRDASKSLVPAELARTILDESGYTAALQAEKTAEAAGRLENLTELARAMEE-- 530

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               + L   LE     +     A+  +V IMT+H AKGLE   VFL      VF  +  
Sbjct: 531 ---YETLGDFLEHVSLVMDNEAVADEEKVTIMTIHAAKGLEFDNVFLPGWEEGVFPSQRS 587

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                +                                ++ EE  RL YV +TRA     
Sbjct: 588 LDEGGL--------------------------------ASLEEERRLAYVAITRARRHCT 615

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           I   +N    ++   +    +              + T            WS        
Sbjct: 616 ILHAAN----RQIYGQWTSSIPSRFIGELPAEHIEEETTLSGGASMWRANWSEREDPFAH 671

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
           + +    +         +    P             S      K  
Sbjct: 672 VAQATPSRGASRGPGWQRAAAQPYNPQPRRIAETTRSAASFAAKPR 717


>gi|157157251|ref|YP_001464155.1| exonuclease V subunit beta [Escherichia coli E24377A]
 gi|300923197|ref|ZP_07139252.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 182-1]
 gi|301326148|ref|ZP_07219534.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 78-1]
 gi|157079281|gb|ABV18989.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E24377A]
 gi|300420506|gb|EFK03817.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 182-1]
 gi|300847113|gb|EFK74873.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 78-1]
          Length = 1180

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 967  PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|331017795|gb|EGH97851.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 727

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 193/592 (32%), Gaps = 116/592 (19%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +  S    LT  K +   YE A ++  V+DF +L++   DL +       +  
Sbjct: 154 EGLRPKHIQASGDLFLTTMKSVYEAYEAACQRAGVIDFSELLLRALDLWRDNPG---LLA 210

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+ QSIY + G
Sbjct: 211 HYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDDDQSIYGWRG 260

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + + +                 +I L  ++RSTA IL   + +        G     
Sbjct: 261 AKIENIHQYSDDFP--------DTEVIRLEQNYRSTASILKAANGLIINNSGRLGK---- 308

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            +LW           + +  +  + F+   +       AR +  
Sbjct: 309 -----------------ELW-------TDVGDGELINLYAAFNEHDE-------ARYVVE 337

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           TI + + T           I   DI +L R    + ++           +I         
Sbjct: 338 TIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERIPYRIYGGQR 383

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470
             +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH   +++E +
Sbjct: 384 FFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARHADVSMWEAM 443

Query: 471 Q------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521
           +                   I+ I  L         H     ++         +Q     
Sbjct: 444 RLLVANKGLTGRAAGALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLITYHEQEKGEK 503

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
           G   ++ L+E ++     E +     L  L + L              + + +++MT+H+
Sbjct: 504 GQARVENLEELVSAARAFENHESDEELTPLAAFLGHASLEAGDTQAQEHEDSIQLMTLHS 563

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P VFLV     +F HK   +                                  
Sbjct: 564 AKGLEFPHVFLVGMEEGLFPHKMSLEEPG------------------------------- 592

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                EE  RL YVG+TRA  QL++                    V +    
Sbjct: 593 ---RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPPA 641


>gi|228474096|ref|ZP_04058837.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274610|gb|EEK13451.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC
           33624]
          Length = 772

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 111/702 (15%), Positives = 218/702 (31%), Gaps = 125/702 (17%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150
           K   +  ++   ++  I ++  +   ++ ++   +       + A+Y +   K   +DF+
Sbjct: 135 KYKQIASRISSYKNNLITVKAYYENPELQEADAMAKRPRLGDIYANYVDRCFKAGAMDFD 194

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN+LL    V   +  K      +IL+DE QDT+  Q+ ++R+L + F       
Sbjct: 195 DLLLRTNELLN---VFPEVLAKYQHRFRYILVDEYQDTNHSQYLIVRALADRF------- 244

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              + +  VGD+ QSIY+F GA    +   ++              +  L  ++RST +I
Sbjct: 245 ---QNICVVGDDAQSIYAFRGANIDNIFNFQKDYPN--------VGVYRLEQNYRSTKNI 293

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + V    +                                V   D++   + +   
Sbjct: 294 VEAANNVIEHNKARLEK---------------------------VVWTDNESGNRIKVHR 326

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           S  D+           R +A          TIF +  +  +   +  VL R    +  I 
Sbjct: 327 SPTDADEG--------RFVA---------GTIFESAMQEQLPYGNFAVLYRTNSQSRAIE 369

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD++A  R ++++ D+ +   ++  P     +
Sbjct: 370 DALR----KRDIPYRIYGGLSFYQRKEIKDILAYFRLVINENDEEALQRVINFPARGIGD 425

Query: 451 DDIFKICTQRHE----------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
             + K+    +E             V +Y  K  +    +       I     + +    
Sbjct: 426 TTMEKLTLCANEFKLPIFEIIKNLEVMDYGLKINSATRVRLLEFANMILSFRIMMETQDA 485

Query: 501 HDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQNSYSSLQ---ELISEL 554
                 I        +F       G E +  ++E LN      +      +    L   L
Sbjct: 486 FTLAEHIAKRTGILNEFKKDGTPEGVERMQNIEELLNGIRDFVEGQEQVEEEGNSLAEFL 545

Query: 555 EQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +             + N V +MT+H AKGLE P VF+V     +F               
Sbjct: 546 QDVALATDMDKEVEDENRVSLMTIHLAKGLEFPHVFIVGMEEDLFPS------------- 592

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK----HSN 669
                                 +    ++  EE  RL YV +TRA  Q  +      +  
Sbjct: 593 ---------------------ALSQNTRTELEEERRLFYVALTRAEKQAYLTYTESRYRW 631

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                    R   ++              +    ++ D +   + S    +         
Sbjct: 632 GKLMDAEPSRFIDEIEERYLEYLTPKDNYRYRPLVDIDAFAPVDKSKLRQQKPTNSPPPA 691

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
            K+  ++Q    +L  P +        +    +         
Sbjct: 692 YKKPNEDQLKKLRLQKPEQAKPIATGDIPKVAVGNIIDHERF 733


>gi|216673|dbj|BAA00048.1| uvrD [Escherichia coli]
 gi|355936|prf||1207236A helicase II
          Length = 720

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 185/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+ +  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLRQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|301169926|emb|CBW29530.1| DNA-dependent ATPase I and helicase II [Haemophilus influenzae
           10810]
          Length = 727

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 193/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 235 YKWIKILAG----------KTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 277 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             + F+ L +       A+ +A  I + +               
Sbjct: 314 ------TEGEKGDPVGIYAAFNELDE-------AKFVASQIQDWVENGGKLD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 613 KLTISYAESRR 623


>gi|218289816|ref|ZP_03494016.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240107|gb|EED07292.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 705

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 119/672 (17%), Positives = 233/672 (34%), Gaps = 116/672 (17%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
           F       Q++++ Q +     DLK    +  +    + ++      + +S  + L +A 
Sbjct: 112 FTILDSEDQESLVQQCLLDLGYDLKAHDARSIKHRISQWKNEGAHRVVNESNPSDL-IAD 170

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++       +DF+DLI +T  L +  +    +R +  ++  H+L+DE QDT+ I
Sbjct: 171 RVMELYDKRLFAANAMDFDDLIGHTVRLFEAHED---VRDRYQEKFRHVLVDEYQDTNGI 227

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ ++R L              R L AVGD  Q+IY++ GA+ + ++R +R         
Sbjct: 228 QFRLLRLLCA----------KHRNLCAVGDADQAIYAWRGADSEHMMRFERDFP------ 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I+ L  ++RST +IL   + V +     +     ST     +   +         
Sbjct: 272 --DAKIVLLTRNYRSTQEILDAANSVIAHNPRRRPKELRSTRGHGDKPLAVRLPDGG--- 326

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                             A  +A  I   +              
Sbjct: 327 --------------------------------AEALYVAEAIEEHVRNGG---------- 344

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + +D  VL R    +  I         +  I           D   +KD++A  R I++ 
Sbjct: 345 RYEDCAVLYRANAQSRAIEEKL----LERAIPYTVVGGMTFYDRREVKDVLAYLRVIVNP 400

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK-----FANCGISKFQHVI 485
           +D++S + ++  P     E  + ++      E  ++YE +        +       +   
Sbjct: 401 QDEISLLRIINRPKRGLGEAAVDRLLEFAHAEGMSLYEALAHGEEAGLSERAAEAARQFH 460

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             + EL    +  +  +F   +L A   R+ ++     E    ++ +DE  + T   ++ 
Sbjct: 461 ASLQELALWMEGMAVSEFLAEVLHATHYREMYLESGKKEDLARVENIDELFSVTRSFDER 520

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              ++ E ++E+      I +        VR+MT+H +KGLE PVVFLV     +F H  
Sbjct: 521 RGGTVAEFLAEVSLLS-DIDKERDRGKGSVRLMTLHASKGLEFPVVFLVGMEEGLFPHAR 579

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                +                                    EE   L YVG+TRA D+L
Sbjct: 580 SMDDPL----------------------------------RIEEERNLCYVGLTRAMDRL 605

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
           ++   +  +   ++  R     + +   +      +      +            H +  
Sbjct: 606 VLTHAAWRTLYGQTVAREPSRFLAEIRDDLVVRVDLAEALEPDVLRPGDRVVHPQHGQGI 665

Query: 723 PLEREETIKQLM 734
            L  E    +  
Sbjct: 666 VLAVETHAGEER 677


>gi|90414255|ref|ZP_01222235.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
 gi|90324702|gb|EAS41243.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
          Length = 724

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 101/551 (18%), Positives = 180/551 (32%), Gaps = 119/551 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++   +L++       IR        HIL+DE QDT+ I
Sbjct: 172 RIYTAYQEACDRAGLVDFAELLLRAFELVRDN---KHIREHYQARFKHILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + R  R         
Sbjct: 229 QFAWLRLMAG----------VDCNVMIVGDDDQSIYGWRGAQVENIQRFLRDFAN----- 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               S I L  ++RST +IL   +++ +      G                       LW
Sbjct: 274 ---ASSIFLEQNYRSTGNILNAANELIANNNERMGKK---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S F+ L +       AR     I               +  
Sbjct: 310 -------TDGEEGELISLYSAFNELDE-------ARFAVGKIKEWRNE---------KGG 346

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D   L R    + ++            +           +   +KD +A  R + ++
Sbjct: 347 SLNDTAFLYRSNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEVKDSLAYLRLMANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD SF  ++ +P     +  +  I    R  + T+++                +  +  
Sbjct: 403 NDDASFERVVNTPTRGLGDRTLETIRLAARDRSVTMWQASVSLLEEQVLAGRAANSLRRF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-- 539
           I+ ++ L    +          ++     R  +    G +     + L+E +  T +   
Sbjct: 463 IELVNALEDDTRDLPLFQQTDDVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFVV 522

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E    + L   +S         +       + V++MT+H+AKGLE P+VF+V     +
Sbjct: 523 PEEAEEMTPLAAFLSHAALEAGEGQADDFE--DAVQLMTMHSAKGLEFPIVFMVGVEEGM 580

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                         +    EE  RL YVGMTR
Sbjct: 581 FPSSRTT----------------------------------EEVGRLEEERRLCYVGMTR 606

Query: 658 ASDQLIICKHS 668
           A  +L I    
Sbjct: 607 AMKKLYITYAE 617


>gi|29830006|ref|NP_824640.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29607116|dbj|BAC71175.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 861

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 123/744 (16%), Positives = 226/744 (30%), Gaps = 165/744 (22%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      V   +      +   +  +         +       +  
Sbjct: 129 AAGEMKERVEQLVGPRANAMWVMTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 183

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + K  +LK +L   +D              F+ T   
Sbjct: 184 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEED------FAAQAADGFEKT--- 233

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 234 ---LAQAYAMYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 287

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHS----------SPRTLFAVGDEKQSIYSFHGAEPKR 236
           DT+  Q+ ++R L      G                P  L  VGD  QSIY+F GA  + 
Sbjct: 288 DTNHAQYALVRELVGVPGPGGGARPEDEPPREDDLEPAELCVVGDADQSIYAFRGATIRN 347

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L+ +              + I L  ++RST  IL+  + V    E+ +  +        
Sbjct: 348 ILQFEEDYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN-------- 391

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW        +     Q +         +       A+ +A  I  +
Sbjct: 392 -------------LW-------TNAGAGAQITGYVADTEHDE-------AQFVADEIDRL 424

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                          +A D+ V  R    + +   +         +           +  
Sbjct: 425 TDAGE---------AKAGDVAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRFYERK 471

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN 475
            ++D++A  R + + ED +    +L  P     +     I    + E  +  + +++   
Sbjct: 472 EVRDVLAYLRVLSNPEDSVPLRRILNVPKRGIGDRAEAMIDALSQREKISFAQALRRVDE 531

Query: 476 CGISKFQ------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---V 525
                 +           + +L  IA+  + P      +L       +  +    +    
Sbjct: 532 AYGMAARSTNAVKRFNTLMEDLRTIAESGAGPATVLEAVLERTGYLAELQASTDPQDETR 591

Query: 526 IDVLDEFLNFTLRNEQNSYSS-------------------------------LQELISEL 554
           I+ L E     L  EQ S +                                L   +  +
Sbjct: 592 IENLQELAAVALEFEQESGAGEEAATGDAAGDAAGDAAGDAPGGAPGAASGDLSAFLERV 651

Query: 555 EQYPPTIKRAHSANHNEV-RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                + +     + N V  +MT+HTAKGLE PVVFL      VF H             
Sbjct: 652 ALVADSDQIPDEEDGNGVITLMTLHTAKGLEFPVVFLTGMEDGVFPHMRSLG-------- 703

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                     +    EE  RL YVG+TRA ++L + + S  S  
Sbjct: 704 --------------------------QTKELEEERRLAYVGITRARERLYLTRSSLRSAW 737

Query: 674 KKSNQRTWYDMVYDSFHNDERVKK 697
            + +       + +        K+
Sbjct: 738 GQPSYNPPSRFLEEIPDAHLEWKR 761


>gi|291461061|ref|ZP_06026707.2| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC
           33693]
 gi|291379194|gb|EFE86712.1| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC
           33693]
          Length = 739

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 105/545 (19%), Positives = 182/545 (33%), Gaps = 117/545 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y     ++  +DF D+++NT  LL+       I  KI ++  +I+IDE QDT+ +
Sbjct: 171 EVYEKYNRNLIESNAMDFSDILLNTYKLLQNSS----ILEKIQKKYKYIMIDEYQDTNNL 226

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +          
Sbjct: 227 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYSN----- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST+ IL   +++    ++++                        LW
Sbjct: 272 ---AKIIKLEENYRSTSTILDAANELIKNNKSSKDKR---------------------LW 307

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                 ++  + S       +I   I                 I
Sbjct: 308 -------TQNGKGDLIKVLVCDNARDEVS-------KIIDIIKENHQNG----------I 343

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             KD+ +L R    + +           Y I               IKD++A    I++ 
Sbjct: 344 PYKDMTILYRTNMQSRVFEEGL----LRYNIPHKIFGGISFYSRAEIKDIIAYLSIIVNP 399

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
           +D+L+   ++  P     E  I KI    R     + + +            G  K   +
Sbjct: 400 QDELNLQRIVNVPKRKVGEKGIEKIIAFARENNLNLLDALSHIKDISGLTATGKEKLSEM 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQN 542
              I EL  ++   +       +L   K            +  I+ ++EF N  L  E  
Sbjct: 460 YDIIKELKDLSYSETASYIVETLLDKIKYIDHIKETYDDADARIENIEEFKNSILELE-- 517

Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +   +  L   LE               + +++MT+H +KGLE P+VFLV   +++F   
Sbjct: 518 NVVGVLRLSEYLENVSLVSATDDLEDEKDYIKLMTIHNSKGLEFPIVFLVGFENEIFPG- 576

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                            +     +   EE  RL YV +TRA  +
Sbjct: 577 ---------------------------------VRASFDEKEMEEERRLCYVALTRAEKK 603

Query: 662 LIICK 666
           L +  
Sbjct: 604 LYLSH 608


>gi|300931283|ref|ZP_07146623.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 187-1]
 gi|300460937|gb|EFK24430.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 187-1]
          Length = 1180

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 277/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++  L+      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAALVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQIGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 967  PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|15602276|ref|NP_245348.1| DNA-dependent helicase II [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720662|gb|AAK02495.1| UvrD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 726

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 192/551 (34%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L++   +L  K+ V   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYQIYQDTCDRAGLVDFAELLLRAYELWLKKPV---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  ++ L  +             +  VGD+ QSIY + GA+ + + R             
Sbjct: 234 YAWVKLLAGE----------QGKVMIVGDDDQSIYGWRGAKIENIQRFLDDFSN------ 277

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL   +++ S   N  G +                     LW 
Sbjct: 278 --AQTIRLEQNYRSTGNILASANQLISNNSNRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +     + F+ L +       A  ++  I   I              +
Sbjct: 314 ------TDGEKGEPVGIYAAFNELDE-------ALFVSSQIKQWIENGG----------K 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            KD  +L R    + +I           ++           +   IKD +A  R I +++
Sbjct: 351 LKDCAILYRSNSQSRVIEEAL----IRSQLPYRIYGGMRFFERQEIKDALAYLRLIANRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD +F  ++ +P  +  E  +  + +  R    T+++  Q   +         +  Q  +
Sbjct: 407 DDAAFERVVNTPPRSIGERTLDMLRSVTREREVTLWQATQLAIHENLLTARAATALQRFL 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++        +    G +    I+ L+E +  T    + 
Sbjct: 467 ELINSLQQDTSEMPLFAQTDFVIKHSGLYAMYQQEKGEKGEVRIENLEELVTATKEFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    L +L + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 DEAEQLSDLTAFLTHASLEAGEEQASPHQDYVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKQ 612

Query: 661 QLIICKHSNTS 671
           +L IC   +  
Sbjct: 613 KLTICYAESRR 623


>gi|241760514|ref|ZP_04758607.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114]
 gi|241319018|gb|EER55520.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114]
          Length = 666

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 108/609 (17%), Positives = 204/609 (33%), Gaps = 116/609 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T A         + A Y+E  +    +DF+DLI 
Sbjct: 126 KEAIFKAQHQISLWKNDLKTPEEAVQTAANVWEQQTARVYASYQETLQSYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV             S              G  ++ + V  Q++               
Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 317

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                      A  +   I   +    + S+      Q  D  VL R      +     R
Sbjct: 318 --------QHEADWVVSQI---VKQKLVGSDKT----QYADFAVLYRGNHQARIFEEALR 362

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 ++    +      D   IKD+++  R + +  DD +F+  + +P     +  + 
Sbjct: 363 S----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPRRGIGDVTLG 418

Query: 455 KIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           K+         ++YE  Q         N      Q  +         A+     +    +
Sbjct: 419 KLNTYAHEHECSLYEAAQTEEALALLNNTNRQHLQAFMDMFGSYRAKAETSEAGELINSL 478

Query: 508 LGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           L         ++      G      + +   +  R  +    ++ EL   +        +
Sbjct: 479 LKEIDYENHLLASEEGKAGEIKWRNVSDLTGWLERKGEQDGKNIIELAQTVALMTLLEGK 538

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + V++ T+H +KGLE P VFLV     +  H                       
Sbjct: 539 -SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN---------------------- 575

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                          +++   EE  RL+YVG+TRA  QL +        +          
Sbjct: 576 -------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCLKRKKQGTWQFPEPSR 622

Query: 684 MVYDSFHND 692
            + +    D
Sbjct: 623 FIDEMPQED 631


>gi|187924773|ref|YP_001896415.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187715967|gb|ACD17191.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 783

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 123/807 (15%), Positives = 236/807 (29%), Gaps = 178/807 (22%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W + +   S                ++ +   L            
Sbjct: 28  GAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAAREMMSRLSALLPIDTRGMWIGT 87

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F  L +  L             + + T +       L + L         K  Q      
Sbjct: 88  FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++    K   +T         L   Y++  ++  V+DF +L++   +LL        +R
Sbjct: 148 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L               ++FAVGD+ QSIY+F 
Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKMLAGQ----------TNSIFAVGDDDQSIYAFR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +   +     R         +I+L  ++RS   IL   +++ +      G +  
Sbjct: 255 GANVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + ++ S  A  I 
Sbjct: 307 TD---------AGHGEPVRVY--------------------------ESATDSQEASWIV 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +I T T             +I +L R    +  I         +  I+       
Sbjct: 332 EEIKALISTGT----------SRSEIAILYRSNAQSRTIEHTL----VNAGIAYRVYGGL 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   
Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYNCSMAAA 437

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
           I   A    S        + ++    Q  S  +    ++      + + + R G + ++ 
Sbjct: 438 IPYVAGKAGSSLAAFANLVGKMRAETQQMSLPETVEYVVRTSGLSEFYQNEREGQDRLEN 497

Query: 529 LDEFLNFTLRNEQNS--------------------------------------------- 543
           L E +N                                                      
Sbjct: 498 LQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATDDPNTVVLDAPGIADPAQ 557

Query: 544 -YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              ++  L   L             A    V++MTVH AKGLE   VF+      +F H+
Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                    ++    EE  RL+YV +TRA ++
Sbjct: 618 NS----------------------------------AMESDGLEEERRLMYVAITRAKER 643

Query: 662 LIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI--KLTNSINKDEWIA 711
           L +           +  +   +       + +       E   +   +  N+    +W A
Sbjct: 644 LYLSFAQSRMLHGQTRYNIRSRFFDELPQETLKWLTPKVEAGARWGGRSDNAGYGRDWFA 703

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQK 738
               T    +TP +      +    + 
Sbjct: 704 RPGYTGPASSTPAQLPAFANEQRAAET 730


>gi|209550144|ref|YP_002282061.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535900|gb|ACI55835.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 825

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 112/669 (16%), Positives = 204/669 (30%), Gaps = 113/669 (16%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+         DF DL+++   + +K      +  +      +IL+DE QDT+ 
Sbjct: 222 RDLYFAYQARLTTLNACDFGDLLMHPIAIFRKNPD---LLKEYHGRFRYILVDEYQDTNT 278

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +           P+ +  VGD+ QSIY + GAE   +LR ++        
Sbjct: 279 AQYMWLRLLAQR------AKGEPQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 327

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL     + +  E   G +  +                   
Sbjct: 328 ---GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDR----------------- 367

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                    S     +    + +DS  +       AR I   I  +     +        
Sbjct: 368 ---------SDPEDVKVQVHASWDSEEE-------ARAIGEEIEQLQRGKHLL------- 404

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D+ +LVR              L     ++          + L I+D MA  R +  
Sbjct: 405 ---NDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVAQ 457

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++ +P     +  +  +    R     +           +           
Sbjct: 458 ASDDLAFERIINTPKRGLGDTTVRALHDYARARDIPMLAAAADIIETDELKPKARKALFD 517

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           VI+       + +     +    IL        + +    E    L+         E   
Sbjct: 518 VIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSME--- 574

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S + +   LE     +    + N + V IMT+H+AKGLE   VFL      +F H+  
Sbjct: 575 --SFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRS 632

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                ++  EE  RL YVG+TRA  +  
Sbjct: 633 LD--------------------------------ESGRAGLEEERRLAYVGITRAKHRCH 660

Query: 664 ICKHSNTSNEK---KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           I   SN         +    + D + ++      +++              ++ +     
Sbjct: 661 IWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEPFAN 720

Query: 721 NTPLE-REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
           +      +       D  +      S    +        P     +G+   +S  S+   
Sbjct: 721 SYSTPGWKRAQANKTDATRDNWGSRSGHAVERIGYGESGPKGRTIEGELVAKSTSSEPSR 780

Query: 780 FNRG-LIIH 787
           F  G  + H
Sbjct: 781 FTLGDRVFH 789


>gi|160914437|ref|ZP_02076652.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991]
 gi|158433595|gb|EDP11884.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991]
          Length = 729

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/564 (16%), Positives = 183/564 (32%), Gaps = 116/564 (20%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                + ++      +   + A YE+   +   LDF+DL+I T  +LK+      +R K 
Sbjct: 152 DANSALARANYEGERIMANVYAFYEKRLAEMFGLDFDDLLIFTYHILKEH---VEVRKKW 208

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            +   ++ +DE QD  ++Q+++I+ L ++             L  VGD  Q+IY++ GA+
Sbjct: 209 QRRFTYLHVDEFQDVDMLQYQIIKMLVKEDSY----------LCVVGDPDQTIYTWRGAQ 258

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
              ++  ++               + L  ++RST  IL   +++     N       +  
Sbjct: 259 VDIIMNFEKDFPHS--------HTVILNENYRSTQPILQASNELIKNNRNRIEKELFTR- 309

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                                     ++ + +   +T+  D              +A  I
Sbjct: 310 --------------------------NESDERIVHFTAMDDYNEPI--------WVAGKI 335

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            ++              ++ +DI VL R    +  +         D  I           
Sbjct: 336 LSLHHNG----------VKYRDIAVLYRSNYLSRGLEKAL----LDQHIPYRIYGGVRFY 381

Query: 414 DHLAIKDLMALGRFIL--------SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464
           D   IKD ++  R +             +L+   ++  P        +  +      +  
Sbjct: 382 DRAEIKDALSYLRLLAPKVEGDDKELFKNLAVKRIINLPKRGIGAKTLETLEQEAAAKDT 441

Query: 465 TVYEYIQKFAN---CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            +YE +++               ++ I          S     + +L      +   +  
Sbjct: 442 NMYEILKQGGFGKGKAKESIAKFVEVIEACRSCVDTISIDQLLSKVLEDSGYMEMLRNDA 501

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
             E ++ L E ++      +N+      L+  L++      +    N   V++MT+H AK
Sbjct: 502 EIERLENLKELISDIANYVENNPDG--SLLDYLQEISLYSDKEDLDNGEFVQLMTIHAAK 559

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VF+      +F ++                                  I    +
Sbjct: 560 GLEFDRVFVYSLCDGIFPNERS--------------------------------INEGGQ 587

Query: 642 STQEEYNRLLYVGMTRASDQLIIC 665
              EE  RL YV  TRA  QL + 
Sbjct: 588 QALEEERRLAYVAFTRAKKQLFLS 611


>gi|329955139|ref|ZP_08296096.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056]
 gi|328526138|gb|EGF53157.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056]
          Length = 785

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/609 (15%), Positives = 187/609 (30%), Gaps = 121/609 (19%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y E  ++   +DF+DL+  T  L +       +  +   +  +IL+D
Sbjct: 173 AAKMPALRDIYRRYWERCRQADAMDFDDLLFYTFLLFRDHPD---VLARYQSQFRYILVD 229

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  L ++           + +  VGD+ QSIYSF GA+   +L   ++
Sbjct: 230 EYQDTNFAQHSIVLQLAKE----------HQHVCVVGDDAQSIYSFRGADIDNILYFTKV 279

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I++  + +    +        S            
Sbjct: 280 YP--------GTKVFKLEQNYRSTQTIVSAANSLIEKNQRQIRKEVFS------------ 319

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +   I+ +   +   
Sbjct: 320 ---------------EKERGEAIGVYQAYSDVEEGDI--------VINKIAELRRQE--- 353

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       +               IKD++A
Sbjct: 354 ------NYAYSDFAILYRTNAQSRVFEEAMR----KRSMPYRIYGGLSFYQRKEIKDVIA 403

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R  ++  D+ +F  ++  P     +  + KI         +++  + +          
Sbjct: 404 YFRLAVNPNDEEAFKRIINYPARGIGDTTVSKITAAATDNNVSLWTVLCEPLTYGVNINK 463

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
               K Q     I   I      + ++  T I+               E     + ++E 
Sbjct: 464 GTAGKLQGFRDLIAGFIEGVTEKNAYELGTEIIRQSGIINDVCQDNSPENLSRKENIEEL 523

Query: 533 LNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            N           E N+  +L + +SE+             +  ++ +MTVH+AKGLE  
Sbjct: 524 ANGMGDFCAQRQEEGNANITLSDFLSEVSLLTDQDSDKDGDDA-KITLMTVHSAKGLEFK 582

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V    ++F                                              EE
Sbjct: 583 NVFVVGMEEELFPSGMAGDSP----------------------------------KALEE 608

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA D   +    +     K         + D      ++ +    +    
Sbjct: 609 ERRLFYVAITRAEDHCFLTYAKSRYRYGKMEFGNPSRFLKDIDVRFLKLPQDAGLSRRID 668

Query: 707 DEWIAYEWS 715
           +  +++   
Sbjct: 669 ENAMSFRRE 677


>gi|126735359|ref|ZP_01751105.1| UvrD/REP helicase [Roseobacter sp. CCS2]
 gi|126715914|gb|EBA12779.1| UvrD/REP helicase [Roseobacter sp. CCS2]
          Length = 676

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 100/552 (18%), Positives = 182/552 (32%), Gaps = 117/552 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+   +    +DF D++++T  + ++    A +  +  +   +IL+DE QDT++ 
Sbjct: 76  ELYAEYQRRLRVLNAVDFGDILLHTVTIFQEN---ADVLERWRRTFKYILVDEYQDTNVA 132

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +            + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 133 QYLWLRLLAD----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 176

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V +  +   G +                       
Sbjct: 177 --GAHVVRLEENYRSTPHILAAASGVIAANKGRLGKTLF--------------------- 213

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   S+ + ++     ++D   +       AR I   +  M              I
Sbjct: 214 -------TSRTDGEKVRLIGHWDGEEE-------ARWIGEEVEAMQRG-----TRGMSPI 254

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + + I+D+MA  R  +S 
Sbjct: 255 GLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDVMAYFRLAVSP 310

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484
           EDDL+F  ++ +P     +  +  I            E   +    +     G+ +   +
Sbjct: 311 EDDLAFERIVNTPKRGLGDKAVQTIQRTARSNGVSLVEGARLVCQGKLLGGRGLKELTIL 370

Query: 485 IKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           +  +        A+  +  +   +IL        + +    E    ++ L E +      
Sbjct: 371 VAGLDRWHGQVRAEADTHVELAEMILDESGYTGFWQNDKTPEAPGRLENLKELVKALENF 430

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +         +V IMT+H AKGLE P VFL      +F 
Sbjct: 431 EN--------LQGFLEHVSLIMDNETEEQGEKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 482

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 483 SQRS--------------------------------MDESGMKGLEEERRLAYVGITRAE 510

Query: 660 DQLIICKHSNTS 671
           +   +   +N  
Sbjct: 511 EICTVSFAANRR 522


>gi|329124082|ref|ZP_08252629.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus
           aegyptius ATCC 11116]
 gi|327467507|gb|EGF13005.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus
           aegyptius ATCC 11116]
          Length = 727

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 235 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 277 -KAETILLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 613 KLTISYAESRR 623


>gi|73666864|ref|YP_302880.1| ATP-dependent DNA helicase Rep [Ehrlichia canis str. Jake]
 gi|72394005|gb|AAZ68282.1| ATP-dependent DNA helicase, Rep family [Ehrlichia canis str. Jake]
          Length = 639

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 107/551 (19%), Positives = 182/551 (33%), Gaps = 122/551 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           T+A      Y+E  K    +DF DL++    +L  +     I     ++  +I++DE QD
Sbjct: 166 TVALSTYHVYQERLKFLNCVDFGDLLLYNIQILTTQHD---ILSHYQEQFKYIMVDEYQD 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + IQ+  +R L + +          + L  VGD+ QSIYS+ GAE   +L+        
Sbjct: 223 INTIQYLWLRLLAQKY----------KNLCCVGDDDQSIYSWRGAEVGNILKFSDDFPN- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST++IL V   + +  ++  G                     
Sbjct: 272 -------AKVVRLECNYRSTSNILNVATAIINNNKSRLGKK------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW    +    Q     + W S              A+ I   I N            
Sbjct: 306 --LW---TTNEKGQKVNLMKFWDS-----------KAEAQYICEYIKNSHD--------- 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q  +  +LVR    T +           Y I           D   I+D++A  + 
Sbjct: 341 ---YQFNETAILVRAGFQTRIFEEYF----IKYNIPYKIIGGTRFYDRQEIRDIIAYLKI 393

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISK 480
             +  +D++F  ++  P  +     + KI     +  T +           + ++     
Sbjct: 394 TANPNNDIAFERIINKPKRHIGASTLNKIYLCAKQNNTYFLNAAKLLVSGNQLSDKVSRS 453

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLR 538
             H++  I          S  +   +I           +    G   I+ + E  +  L 
Sbjct: 454 LNHLLNKIDSWKESLLSDSISNTVKMIAYDSGYIDMLENEGENGLARIENIKELFSALLS 513

Query: 539 NEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                     ++   LE      +      N+N   IMT+H AKGLE P+VFL      +
Sbjct: 514 F--------NDVNEFLEHISLVTEMDSLDYNNNYTYIMTLHAAKGLEFPIVFLPGWEEGI 565

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H                                   ++       EE  RL YVG+TR
Sbjct: 566 FPH--------------------------------EKSLQDRTGEALEEERRLAYVGITR 593

Query: 658 ASDQLIICKHS 668
           A +QL I   +
Sbjct: 594 AREQLFISCAA 604


>gi|255535683|ref|YP_003096054.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium
           3519-10]
 gi|255341879|gb|ACU07992.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium
           3519-10]
          Length = 775

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 103/670 (15%), Positives = 201/670 (30%), Gaps = 131/670 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +A  KN  +DF+DL++ TN+LL +      +  K      +IL+DE QDT+  
Sbjct: 176 AIYQKYVDACFKNGAMDFDDLLLRTNELLTRFPE---VLAKYQDRFRYILVDEYQDTNHS 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ ++++L   F            +  VGD+ QSIYSF GA    +L  K+         
Sbjct: 233 QYLIVKALASKFE----------NICVVGDDAQSIYSFRGANIFNILNFKKDYP------ 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + L  ++RST +I+   + V S        +  S                    
Sbjct: 277 --DAVTVALEQNYRSTQNIVNAANVVISKNVQQFKKNVFS-------------------- 314

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  D++   + + + S  D+          A  +A  I     +            
Sbjct: 315 -------DNEEGEKIKVYRSLSDADE--------ANFVASNIWEQHNS---------FQR 350

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D  +L R    T       R       I               +KDL+   R ++++
Sbjct: 351 KFTDFAILYRTNSQTRAFEDALR----RKNIPYRVFGGLSFYQRKEVKDLIGYLRLLVNE 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGIS---------KF 481
            D  +   ++  P+    E    K+      +  ++ E +    +             K 
Sbjct: 407 NDAEALSRVINYPVRGIGETTQNKLIVFADKKNVSITEILGNLGHYAPELGLNNGILTKL 466

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I     + +  + +     +       +        E    ++ + E +N    
Sbjct: 467 SDFWAMIKAFQVMLKTENAYTVAMEVAKRSGLIKFLNDDQTPEGISRVENVQELMNSMQG 526

Query: 539 NEQN------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +          SL   +  +     T         ++V +MT+H +KGLE PVV LV 
Sbjct: 527 YIEEQQQLEDGDPSLSGFLENIALSADTQ-NDKKDGGDQVSLMTIHLSKGLEFPVVHLVG 585

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F                                                   L Y
Sbjct: 586 LEENLFPSFMSSSTREEIEEERR----------------------------------LFY 611

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V +TRA  Q             +       D     F ++   + ++  N   +  ++ +
Sbjct: 612 VALTRAEKQAFFSYAV-----SRFQWGKITDAEPSRFLSEVDPQYLEFINPAIESRFVNH 666

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI---LNPSTIDTKGKTN 769
                   +       +  +   ++ I +    P+  ++        +NPS   ++    
Sbjct: 667 SGLKSSIFDDEPTAPRSFSKKAQKKTIERSEPQPVPQNLKPVATARIINPSGASSENIEV 726

Query: 770 LESLLSDNQT 779
            + +  D   
Sbjct: 727 GDQVRHDRFG 736


>gi|229844857|ref|ZP_04464995.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1]
 gi|229812238|gb|EEP47929.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1]
          Length = 726

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 192/551 (34%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 276 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 526 DDAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTISYAESRR 622


>gi|209920268|ref|YP_002294352.1| exonuclease V subunit beta [Escherichia coli SE11]
 gi|209913527|dbj|BAG78601.1| exonuclease V beta subunit [Escherichia coli SE11]
 gi|324016326|gb|EGB85545.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 117-3]
          Length = 1180

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 967  PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|219871258|ref|YP_002475633.1| DNA-dependent helicase II [Haemophilus parasuis SH0165]
 gi|219691462|gb|ACL32685.1| DNA-dependent helicase II [Haemophilus parasuis SH0165]
          Length = 727

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 109/581 (18%), Positives = 193/581 (33%), Gaps = 121/581 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               Y+EA  +  +LDF +L+I   +L K   +   I  +  Q   HILIDE QDT+ IQ
Sbjct: 178 FYQIYQEACDRAGLLDFAELLIRAYELFKYNPL---ILQRYQQRFQHILIDEFQDTNNIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++I  L                +  VGD+ QSIY + GA+ + + R             
Sbjct: 235 YDLIHLLAG----------KTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYDN------ 278

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL   + + +  +N  G +                     LW 
Sbjct: 279 --AQTIRLEQNYRSTGHILNSANALIANNDNRLGKN---------------------LW- 314

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + +         F+ L +       AR +A  I      +            
Sbjct: 315 ------TDKGDGDPVDIYCAFNELDE-------ARFVASQIKQWKEDEG----------D 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                VL R    + +I            I           +   IKD +A  R I +++
Sbjct: 352 FNQCAVLYRGNAQSRVIEEAL----IQANIPYRIYGGMRFFERQEIKDALAYLRLIANRQ 407

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ IQ        +    S     +
Sbjct: 408 DDAAFERVVNTPPRAIGDRTLDILRQLTRTRQITLWQAIQVAVQEEHLSGRSASALLRFV 467

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--- 539
           + I+ L    +     +    ++      + +    G +    I+ L+E +  T +    
Sbjct: 468 ELINALEQETEEMPLFEQTDFVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATRQFVKP 527

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E    + L   ++             S + + V +MT+H+AKGLE P VF+V     +F
Sbjct: 528 DEAEEMTDLTAFLTHASLEAGET--QASLHQDYVELMTLHSAKGLEFPRVFIVGVEEGIF 585

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                     +   +E  RL YVG+TRA
Sbjct: 586 PSGMSFD-----------------------------------EGRLQEERRLAYVGITRA 610

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +L I    +     K  +      + +      R  +++
Sbjct: 611 KKKLTISYAESRRLYGKEERHLPSRFIGELPEEHIREVRLR 651


>gi|325287669|ref|YP_004263459.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
 gi|324323123|gb|ADY30588.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
          Length = 773

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 108/682 (15%), Positives = 222/682 (32%), Gaps = 127/682 (18%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFE 150
           K   ++ ++   ++  I ++  FN   + ++   +       +  +Y E   K   +DF+
Sbjct: 136 KYKQIQNRISSYKNSLITVKAYFNNPDLMEADAMAKRPRTGEIYKNYVERCFKAGAMDFD 195

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL++ TN+LL    V   +  K      +I++DE QDT+  Q+ ++++L++ F       
Sbjct: 196 DLLLKTNELLN---VFPEVLQKYQNRFQYIMVDEYQDTNHSQYLIVKALSDKF------- 245

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              + +  VGD+ QSIYSF GA    +L  ++             ++  L  ++RST +I
Sbjct: 246 ---QNICVVGDDAQSIYSFRGANISNILNFQKDYDN--------VAMYRLEQNYRSTGNI 294

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + +    +N       ++               +++   +    +           
Sbjct: 295 VNAANSIIEKNKNQLEKVVWTSN---------DDGPLIKVHRSITDAEEG---------- 335

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                           R +A          TIF       +   +  VL R    +  I 
Sbjct: 336 ----------------RFVA---------GTIFETRMNEQLHNGEFAVLYRTNSQSRSIE 370

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       I               IKD++A  R +++ +D+ +   ++  P     +
Sbjct: 371 DALR----KRDIPYRIYGGLSFYQRKEIKDVLAYLRLVINPKDEEALKRVINFPGRGIGQ 426

Query: 451 DDIFK-ICTQRHETETVYEYIQKFANCGIS-------KFQHVIKYIHELIHIAQFCSPHD 502
             I K + T  H   +++E ++      +        +    +  I     + +      
Sbjct: 427 ATIDKLLVTANHYGRSMFEVMENIDKIELKINAGTKRRLTEFVNMIKGFQIMNKGADAFS 486

Query: 503 FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRNEQNSYS------SLQELISE 553
               +        +F      E    ++ ++E LN      +          ++ E + +
Sbjct: 487 LSEHVAKKTGILLEFKKDGTPEGIAKMENIEELLNGIKDFVEGQMELADATGNIAEFLED 546

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +     T       + + V +MT+H AKGLE P VF+V     +F               
Sbjct: 547 VALA--TDLDNDKGDDDRVALMTIHMAKGLEFPHVFIVGMEEDLFPS------------- 591

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK----HSN 669
                                 +    ++  EE  RL YV +TRA  Q  +      +  
Sbjct: 592 ---------------------AMSMNTRTELEEERRLFYVALTRAEKQAYLTYTESRYRW 630

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                    R   ++      N   V   K  + I+K+ +   + S             +
Sbjct: 631 GKLVDAEPSRFIEEIDEKYIENLTPVSNYKYKSLIDKNIFGEVDKSKLRQVKPVSGIPPS 690

Query: 730 IKQLMDEQKIPKKLFSPIKNDI 751
             +  + Q    +   P     
Sbjct: 691 APKPNENQLRKLRKLKPELAQP 712


>gi|254037871|ref|ZP_04871929.1| exodeoxyribonuclease subunit V beta [Escherichia sp. 1_1_43]
 gi|226839495|gb|EEH71516.1| exodeoxyribonuclease subunit V beta [Escherichia sp. 1_1_43]
          Length = 1180

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 122/877 (13%), Positives = 275/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 967  PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023

Query: 852  SGK--------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                                         +   +   ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPIIEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|329576879|gb|EGG58364.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1467]
          Length = 604

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 94/513 (18%), Positives = 179/513 (34%), Gaps = 92/513 (17%)

Query: 112 DRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +     K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +    
Sbjct: 5   ELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT---L 61

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY + 
Sbjct: 62  AFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYGWR 111

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+ + +L  ++             S+I L  ++RST +IL   + V     N +     
Sbjct: 112 GADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK--- 160

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             +LW           + ++  +        +        + I 
Sbjct: 161 ------------------ELW-------TENIDGEKIVYYRGDTERDET-------QFIV 188

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I   +  +              D  VL R    + ++  +         I        
Sbjct: 189 SQIQKEMRENDRI---------YGDFAVLYRTNAQSRVVEEML----LKSNIPYTMVGGH 235

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469
              D   IKD++A    I + +D +SF  ++  P     +  I K+          + E 
Sbjct: 236 KFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGWALLEA 295

Query: 470 IQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            Q       +     +  +    I +L     + +  +     L     R+  +++   E
Sbjct: 296 AQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMAQNNLE 355

Query: 525 ---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAHSANHN 570
               ++ LDEFL+ T   ++              + L + +++L             + +
Sbjct: 356 SQARLENLDEFLSVTQEFDKRFEAQNNDDSNGEETKLADFLTDLALVSDLDN--LEESSS 413

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           +V +MT+H AKGLE PVVFL+     VF     
Sbjct: 414 QVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 446


>gi|194439867|ref|ZP_03071931.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 101-1]
 gi|253772326|ref|YP_003035157.1| exonuclease V subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS
            AG']
 gi|254162748|ref|YP_003045856.1| exonuclease V subunit beta [Escherichia coli B str. REL606]
 gi|194421204|gb|EDX37227.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 101-1]
 gi|242378368|emb|CAQ33146.1| recB, subunit of RecBCD [Escherichia coli BL21(DE3)]
 gi|253323370|gb|ACT27972.1| exodeoxyribonuclease V, beta subunit [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gi|253974649|gb|ACT40320.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli B str.
            REL606]
 gi|253978814|gb|ACT44484.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
            BL21(DE3)]
 gi|323960737|gb|EGB56360.1| exodeoxyribonuclease V [Escherichia coli H489]
 gi|323971651|gb|EGB66881.1| exodeoxyribonuclease V [Escherichia coli TA007]
          Length = 1180

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQIGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 967  PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|170726988|ref|YP_001761014.1| exodeoxyribonuclease V subunit beta [Shewanella woodyi ATCC 51908]
 gi|169812335|gb|ACA86919.1| exodeoxyribonuclease V, beta subunit [Shewanella woodyi ATCC 51908]
          Length = 1229

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 146/970 (15%), Positives = 302/970 (31%), Gaps = 132/970 (13%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             K +WP     +  +   + L          KK     + +      + +   S      
Sbjct: 234  LKLIWPRERENIEALLHALPL----NGVRFGKKPDGYPKLAVMLDAMDNWCKFSDSLPPM 289

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
            K     ++   ++NK      E     Q   +   +R  +              + ++  
Sbjct: 290  KVMESLSLSELKLNKGG----EIPTPEQAPVLDHIERLCSLINDFIPSFLYCAREGISRR 345

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-------WIRYKIDQEINHILIDEVQDTS 189
            + + K +  +L  +DL+      L+  +           +   I +     LIDE QDT 
Sbjct: 346  FIQQKSERNLLTPDDLLTTLEQALRPNEHGESTLANTAQLAATIAKRFPVALIDEFQDTD 405

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPR-TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
             +Q+ +   + +          +   +L  +GD KQ+IY+F GA+    ++ +   Q   
Sbjct: 406  PLQFAIFSRIYQMQANIPAKAGAGNLSLLMIGDPKQAIYAFRGADIHTYIQARTQTQDHY 465

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                       L  ++RS+ +++  V+ +F   ++           +        +    
Sbjct: 466  N----------LDTNYRSSRNMIVGVNALFENRDDPFISQAIPFEPVHPSPFADKK---- 511

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                 + S  D      +         L + ++   LA   A  I  ++           
Sbjct: 512  ---VFIESGGDDSALKIKLLSEDPEKGLNKTTARKRLAEDAAAEICRLLTQSQAGECSIS 568

Query: 369  -RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             + ++AKDI VLVR R +      + +   +D +I  V   R  + + L  +++  +   
Sbjct: 569  GQPLKAKDIAVLVRDRNEAA----VIKQSLSDRQIGAVFLSRDSVFNTLEAREMALVLHA 624

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + + +D+ +    L + L  F    I          +T+ E   +     + +       
Sbjct: 625  LATPKDERALRSALATSLLGFDALSIHSFNQDEMVRQTLLEQFDELHKNWLRR-----GV 679

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +  L+++A           +L  + G ++            L E L      +      +
Sbjct: 680  MPALLNLANETK---LIERLLQDEDGERRLTD------FRHLAELLQQ----KATELDGI 726

Query: 548  QELISELEQ------YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              L++  EQ           +    +  N V+I+T+H +KGLE PV F+           
Sbjct: 727  SALVNWYEQALIENNANEEAQLRLESEQNLVQIVTIHKSKGLEYPVCFIPFVSLA----- 781

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
               +    P L  +    +W               +  K+    E  RLLYV MTR   Q
Sbjct: 782  RDNRRKPAPMLYHENNKLVWDIAQSDEG------WERHKRENLAEDLRLLYVAMTRPVYQ 835

Query: 662  LIICKHSNTSNEKKSNQRTWYD-----MVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
              +   +++   KK+   +         +           +I+       ++ I+     
Sbjct: 836  CYLYVANHSRFTKKAGITSQLHETGIGYLLGIEDKACEFSRIQSQAQKLMEQAISVIQMG 895

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIK----------------NDINEPYILNPS 760
                  PL+    I+  +  +++ +KL++P +                    +       
Sbjct: 896  DDASTQPLDNISDIELKLAPKELKRKLYTPWRVGSYSGLVKDLPHEHIAPGADDEAFPEL 955

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
             I         S  +  +  N G  +H +L++I   P+ + +  I               
Sbjct: 956  EIIQDEVDPTPSRFTFERGANAGSFMHLVLELI-DFPQAETELPIHLPIAMEKYGIDESW 1014

Query: 821  YKNLLLSITRLLENP-------MMTTAMSCDSYSEVSVSGKINCPKK------------- 860
            Y+ L +    LL +P        +          E+     IN                 
Sbjct: 1015 YEVLNIWYRDLLASPLVADGSLKLAQLAHAQKLVEMEFYLPINQLIAVKLNTLLETHGYS 1074

Query: 861  --------DIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQ 903
                      ++ G ID     Q   +I +YK++H             +     + +  Q
Sbjct: 1075 AGLNFESLKGMLKGFIDLTFEHQGQFYIADYKSNHLGDDVSHYGFDAMKGAIRSHRYDLQ 1134

Query: 904  LSIYEKILKD 913
              IY   L  
Sbjct: 1135 YIIYTLALHR 1144


>gi|315109404|gb|EFT81380.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2]
          Length = 1072

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 149/995 (14%), Positives = 298/995 (29%), Gaps = 122/995 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         I    +  +       L KA           I +    L+    +   +
Sbjct: 122  AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K +   +   +   L    K+  D +  I    +     +  L  +       A Y+ 
Sbjct: 182  PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+ +L
Sbjct: 234  LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
               F    + H     + AVGD  Q+IY + GA    +L   R    +    G    ++ 
Sbjct: 291  ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  + R    I+   +               ++  +R   S   + G     +       
Sbjct: 345  LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
             Q     E       ++          +  A  +       TI         +  D  +L
Sbjct: 391  GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            VR+  D   +            + V   +   L     I  ++A  R ++ ++DD +   
Sbjct: 443  VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498

Query: 440  MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483
            +L +P    S DD+  +  +                      + + + +    G  + Q 
Sbjct: 499  LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558

Query: 484  VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             +K +   I      +  SP D    I           +   +      D LD   N   
Sbjct: 559  ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRDHLDALWNAIR 618

Query: 538  RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               ++    ++  +++ L         + RA + + + V + TVH AKGLE P+V + D 
Sbjct: 619  EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678

Query: 594  GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
               VF              ++PS        I  P S S  +  + +    + S   E  
Sbjct: 679  AQSVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737

Query: 649  RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA ++L++  H      +       + D++ D           +  + I   
Sbjct: 738  RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797

Query: 708  -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                 +         +    + +  +K       +  ++  P +
Sbjct: 798  TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801
               ++   L+ +    +           ++    G   H+         + I      + 
Sbjct: 858  LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917

Query: 802  KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                    T+ A        +   L S+ +  E      A      + ++V         
Sbjct: 918  AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971

Query: 861  DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              ++ GR+D +     +     + ++KT      +          QLSIY      +   
Sbjct: 972  QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                +  +  +V   +             A I T 
Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|291618660|ref|YP_003521402.1| RecB [Pantoea ananatis LMG 20103]
 gi|291153690|gb|ADD78274.1| RecB [Pantoea ananatis LMG 20103]
          Length = 1179

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 151/975 (15%), Positives = 291/975 (29%), Gaps = 147/975 (15%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEER 65
            + N       K  W      V  +     +   + +   L    A+  Q A       + 
Sbjct: 224  AANLERINALKQQWQAASADVEGLISASGVDKRSYSSKHLPNWVAKVTQWAQSETLDYQL 283

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L  F          +  T++       L + + +   E + +RD             
Sbjct: 284  PKELERF-----GQQVLHEKTKKGEAPQHALFDAVDRFLAEPLTLRDVI----------- 327

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                   +    +  K++  +L F+DL+   ++ L++    A +   I       LIDE 
Sbjct: 328  IWQALTEVREAVQREKRQRALLGFDDLLSRLDEALQQPG-GALLAETIRGRFPVALIDEF 386

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT   Q+ + R+L          H     L  +GD KQ+IY+F GA+    LR +    
Sbjct: 387  QDTDPQQYRIFRTLY--------LHQPELALLLIGDPKQAIYAFRGADIFTYLRARSEVS 438

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
               T          L  ++RS+  ++  V+++FS  ++    S      +   +      
Sbjct: 439  AHYT----------LDTNWRSSPGMVDSVNRLFSQVDSPFLFSSIPFLPVSPAAPNQA-- 486

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---- 361
                    +   +  Q  P    W    + +        +A++ A  IS  +        
Sbjct: 487  --------LKLIYQQQPQPALRFWLQPGEGVGVSDYQQFMAQQCAADISRWLVAGQQGQA 538

Query: 362  -IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             I      + ++A DI VLVR R +  LI      L      SV  + R  +      ++
Sbjct: 539  LIGKGDALQPVKASDITVLVRSRNEASLIRDALNSLSIP---SVYLSSRDSVYTTPEARE 595

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+ L + + S E +      L + +F     ++  +       + + E            
Sbjct: 596  LLWLLQAVQSPEQERLLRSALATSIFAIDAAELDALAQNERHWDALVEQFV--------S 647

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---L 537
            +Q +      L  +            +L +  G ++            L E L      L
Sbjct: 648  WQQIWHQRGVLPMLRDVMITRQLAENMLASDNGERRLTDLM------HLGELLQEAAVQL 701

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +       L + I+  +    + +    ++ + V+I+T+H +KGL+ P+V+L       
Sbjct: 702  DSTHALVRFLAQQIARPDSQAASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAG-- 759

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                                       +          +   ++    E  RLLYV +TR
Sbjct: 760  -----------FRESASALYHDRESFAAMLDVQGDEYSLTLAEEERLAEDLRLLYVALTR 808

Query: 658  ASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL-------TNSI 704
            +          +I      + E   ++     +V      D       L          I
Sbjct: 809  SVHHCSVGIAPLIKGARKKAGESDLHKSALGFLVQRGEIADAAQLSQHLQALEGAGIEVI 868

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
            +        W      N  L   E  + L D  ++                 L    ID 
Sbjct: 869  SSALQPGAIWHEGQGSNDALSSREMTRALADSWRVTSYSGLQQHGSSPLLDALPKFDIDA 928

Query: 765  KGKTNLES-----LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
             G+T  E           +    G  +H L + I      +   ++     +N       
Sbjct: 929  AGETADEEDTLLTPHHFPRGAAPGTFLHGLFESIDFTEPPE-ALWLEDQLQQNGYSLS-- 985

Query: 820  EYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK------------------- 854
                +   I R+L  P+      + +  S D   E+                        
Sbjct: 986  WLPVIQQWIARVLTTPLNKEGVTLASINSRDRLIEMEFYLPINNLLTATDLDALVRRYDP 1045

Query: 855  -------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY--------- 898
                   ++  +   ++ G ID +   Q   ++ +YK++        + P          
Sbjct: 1046 LSQRGPALDFRQVKGMLKGFIDLVFRWQGKYYLLDYKSNWLGESHAAYTPEAMEQAMIDH 1105

Query: 899  THIAQLSIYEKILKD 913
             +  Q  +Y   L  
Sbjct: 1106 RYDLQYQLYTLALHR 1120


>gi|206579213|ref|YP_002241124.1| DNA helicase II [Klebsiella pneumoniae 342]
 gi|288937764|ref|YP_003441823.1| DNA helicase II [Klebsiella variicola At-22]
 gi|206568271|gb|ACI10047.1| DNA helicase II [Klebsiella pneumoniae 342]
 gi|288892473|gb|ADC60791.1| DNA helicase II [Klebsiella variicola At-22]
          Length = 720

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 100/553 (18%), Positives = 179/553 (32%), Gaps = 116/553 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNDLDE-------ARFVVNRIKTWQENGGALEQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++       A    S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLKEKVLAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMALDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTS 671
             +L +       
Sbjct: 607 MQKLTLTYAETRR 619


>gi|323357219|ref|YP_004223615.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323273590|dbj|BAJ73735.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 826

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 127/809 (15%), Positives = 239/809 (29%), Gaps = 144/809 (17%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF-LTQ 76
           ++ +P     ++  NK      E  +  I +KA  +  ++            +  F  T+
Sbjct: 79  REAYPSQILAITFTNKAAGEMRERVHQLIGQKADGMWISTFHSACVRILRREAEQFGFTK 138

Query: 77  KFTPQKNIITQEINKKS------PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            FT   +  ++ + K+                +Q    K+++     + +  +      A
Sbjct: 139 AFTIYDSGDSRALIKRLVKEHEGDSFGLTPAGTQSRISKLKNELADAESYARSANMSDPA 198

Query: 131 KYLNAH----YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + +       Y+   ++    DF+DLI  T  L +       +  +  +   HIL+DE Q
Sbjct: 199 ERIFVEIFSSYQRELQRANAFDFDDLIAQTVYLFR---AFPQVADRYRKRFRHILVDEYQ 255

Query: 187 DTSLIQWEVIRSLTE-------------------DFFVGKNTHSSPRTLFAVGDEKQSIY 227
           DT+  Q+ +I  LT                    D   G  T     +L  VGD  QSIY
Sbjct: 256 DTNHAQYALIHELTRPVGSDAEPFSSGGMMIFDADPSTGSGTDGGAASLTVVGDSDQSIY 315

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA+ + +   +R              ++ L  ++RST +IL+  + V S   + +  
Sbjct: 316 AFRGADIRNISEFERDYP--------GAKVVLLEQNYRSTQNILSAANAVISNNFDRKDK 367

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW       D         +T          S    A+
Sbjct: 368 K---------------------LW------TDVGAGDPIIGFT--------GYSQHDEAQ 392

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I  +              +    I V  R    +  +  +         +     
Sbjct: 393 FVADEIEALHKKG----------VDYSGIAVFYRTNSQSRALEEIF----IRSAVPYKIM 438

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                 +   IKD +A    + +  D +S   +L  P     +     I         T 
Sbjct: 439 GGTKFYERAEIKDALAYLVAVANPADGMSVRRILNRPRRGIGDVTETAIARYAAEHDITF 498

Query: 467 YEYIQKFANC-GISKFQHVIKYIHELI------------HIAQFCSPHDFFTLILGAKKG 513
            + +   A      K Q  I  +  ++             +A   S  +  TL+L     
Sbjct: 499 RDALANSAQIGVGPKLQKAIDQLDAVLTEATAIMLPASGELAPSTSVTEGLTLLLNKSGY 558

Query: 514 RQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANH 569
                +    +    ++ LDE +  T    +N+    + + ++E+           ++  
Sbjct: 559 FDALRASKDPQDEARLENLDELIAVTREFARNNPEGTVIDFLTEVTLVADADDLDDASGS 618

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             V +MT+HTAKGLE   VFL      +  H+        P                   
Sbjct: 619 --VSLMTLHTAKGLEYDAVFLTGVEEDLLPHRISANEPGGP------------------- 657

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                          +E  RL YVG+TRA  +L +      +   +         + +  
Sbjct: 658 ---------------QEERRLFYVGITRARKRLHVSLAMTRAQFGEVTVAMPSRFLQEIP 702

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
            +    ++     +           +       P         L+   K      S   N
Sbjct: 703 ADLIDWRQSPGDVNGRGGSQSRALNARGRRPGQPGGGSRYGDDLVPLPKRAPADPSKFPN 762

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            I      N   +   G         + +
Sbjct: 763 RIPAKVRDNGDMVLASGDRIRHDDFGEGR 791


>gi|289677452|ref|ZP_06498342.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae FF5]
          Length = 727

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 118/661 (17%), Positives = 214/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEIACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIINNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + +             I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKIG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L         H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLAAKVMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|111023339|ref|YP_706311.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110822869|gb|ABG98153.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 1115

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 143/1063 (13%), Positives = 273/1063 (25%), Gaps = 214/1063 (20%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
              +  + +      +LW L +  VS  +  +       + T    A + Q A      ++
Sbjct: 134  LPIEPSATLLS-ETELWQLAHRVVSSWDGDLDTDRNPASVTEAVLALSGQLAEHLVEPDD 192

Query: 65   RFSL---LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                   L     T    P++            +L + L         +           
Sbjct: 193  LREAHTELDKLVHTLPAGPRQRGGP------GKELLDILDTQHRRVELL----------- 235

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                       L     +  ++   LDF   +     +         +          +L
Sbjct: 236  ----------PLVQRLADTLRREGALDFGSQMSLAARVAADHPE---VGLAERTRFRVVL 282

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   Q  ++ SL      G+        L AVGD  QSIY + GA    + R  
Sbjct: 283  LDEYQDTGHSQRVLLSSLFGGGLDGELA------LTAVGDPMQSIYGWRGASAANLPRFA 336

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                      G     +EL  S+R+  + L + +        +  L E   +    R+  
Sbjct: 337  TDFP---LANGDPAPTLELLTSWRNPPEALALAN------MASASLRERGVSVSTLRARP 387

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V+L        +                             +A  I+       
Sbjct: 388  QAVPGDVRLALTGDVVQER--------------------------EWVADRIAE------ 415

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             +++   R        VL+R+  D   I  + R       + V       L     + D+
Sbjct: 416  QYADATSRGEDPPTAAVLIRRNADAAPIAEVLRS----RGLPVEVVGLGGLLHTPEVADV 471

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            +A+ R +       + V ML    +     D+  +  +  E      Y    A    S  
Sbjct: 472  IAMLRVVADPMAGSAAVRMLTGARWQIGAADLTALSRRASELAIGTGYGTTGAVTDSSAL 531

Query: 482  QHVI---------------------------------------KYIHELIHIAQFCSPHD 502
               +                                         +  L          +
Sbjct: 532  ADAVGQALPGEHAEQAGLADALADPGPAERYSQVGYARITAVAAELASLRERIGQ-PLTE 590

Query: 503  FFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                +  A     +  +R      G+   + LD F +        + +++  L++ L   
Sbjct: 591  LVAEVERALGIGIEAQARTRRSARGSAGREHLDAFADVVAGYASRTSATVTGLLAFLSAG 650

Query: 558  PPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                          + + V+++TVH+AKGLE  VV +    + VF  +      +     
Sbjct: 651  ESVEKGLAPGEVEVDPHRVQVLTVHSAKGLEWEVVAVPHLTAGVFPSRTASGSWLGAVGE 710

Query: 614  DDPGIPIWIPQ------------------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              P +     +                   K     V      L     +E  RL YV +
Sbjct: 711  LPPSLRGDRARPGESADGVPVLELENLYDRKDLEEAVKAHKAALAARKLDEDRRLFYVAL 770

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWY-------------------DMVYDSFHNDERVK 696
            TR    L    H    +  +    + +                   D+   +   DE+  
Sbjct: 771  TRTERVLFASGHHWAESGTEPKGPSEFLTELRDTVTDEEHEGIGIVDIWAPAPEPDEQNP 830

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK--------------- 741
                  S                    L      +                         
Sbjct: 831  LTSTPKSAVWPRDPLGLRRESVERGAALVVAALKRAGAPTPAGEDDDPENWAADVDALLA 890

Query: 742  --KLFSPIKNDINEPYILNPSTIDTKGKTN--------LESLLSDNQTFNRGLIIHKLLQ 791
              +  +  + ++  P  L+ S +                      N    RG   H  ++
Sbjct: 891  EREARANARTEVVLPGQLSVSQLVELEADPDALAARLRRPLPFPPNPLARRGTAFHAWVE 950

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851
                     R+   T     +  L  A +      +    L++  + ++ +  + +EV  
Sbjct: 951  ---------RRFGATRLLDLDE-LPGAADTDAGPDTDLATLQDAFLRSSWADRNPTEV-- 998

Query: 852  SGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
                       ++ GRID +         + ++KT        E      + QL+ Y   
Sbjct: 999  EVPFETSVAGTVLRGRIDAVFTDPDGGWTVIDWKTGAEPSAANEKAV---VMQLAAYRLA 1055

Query: 911  LKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
              +    P + +     YV   +           A A +    
Sbjct: 1056 WAELMDVPIERVRAAFHYVRTGRTIAPDHLPDADALARLLRSA 1098


>gi|308176361|ref|YP_003915767.1| ATP-dependent DNA helicase PcrA [Arthrobacter arilaitensis Re117]
 gi|307743824|emb|CBT74796.1| ATP-dependent DNA helicase PcrA [Arthrobacter arilaitensis Re117]
          Length = 792

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 108/638 (16%), Positives = 205/638 (32%), Gaps = 129/638 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K    + I  K   LK +L           D  +      +          +   Y    
Sbjct: 153 KRFTPKAIAHKISSLKNEL----------IDDEDYASTINANDPFSRAVSEVYRGYTRRL 202

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    +DF+DLI     + +       +     +   H+LIDE QDT+  Q+ ++R LT 
Sbjct: 203 RAANAMDFDDLIGQVVYMFR---AFPRVADNYRRRFRHVLIDEYQDTNHAQYSLVRELT- 258

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
               G    ++P  L  VGD  QSIY+F GA+ + ++  ++             + I+L 
Sbjct: 259 ----GVEGDTTPGELTVVGDSDQSIYAFRGADIRNIIDFEKDYPN--------AATIKLE 306

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL+  ++V     +                          LW        + 
Sbjct: 307 QNYRSTQTILSAANEVIKRNPDRNDKK---------------------LW-------TAS 338

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
            + ++ +            S S  AR IA  I  +   D          ++  D+ +  R
Sbjct: 339 GDGEKITGYV-------GESESDEARWIAEEILRLNDDDE---------VRPGDVAIFYR 382

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +            +           D   IKD +A  R +++ +DD++   +L
Sbjct: 383 TNAQSRALEEQL----MRVDLKYRVVGGTRFYDRKEIKDALAYLRALVNPDDDINVRRIL 438

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494
             P     +     +      +  +  + +++          GI      +  + +L  +
Sbjct: 439 NEPKRGIGDRAEGAVAALAERDRISFMDALRRSDEAPGLGTRGIKMTAAFVSMMDDLKTV 498

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS-SLQEL 550
           A+   P +    +L      +        +    ++ L E +        +     L+  
Sbjct: 499 AEGSGPAEALEAVLEQTGYLETLRLSSDPQDESRVENLAELVAVVRDYVNDEPEGGLEGF 558

Query: 551 ISELEQYPPTIKRAHSANHNE----------VRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +  +       +   + + +E          V +MT+HTAKGLE PVVFL      VF H
Sbjct: 559 LERVALVADADQIPEAPSDDEGAAMAAQEGVVTLMTLHTAKGLEFPVVFLTGMEHGVFPH 618

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       +    E  RL YVG+TRA +
Sbjct: 619 Q----------------------------------RSMTDEKELAEERRLAYVGLTRARE 644

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           +L + +    S   ++        + +        K+ 
Sbjct: 645 RLYLTRAEQRSLWGQAQYNPASQFLEEVPSELIDWKRE 682


>gi|145635037|ref|ZP_01790743.1| DNA helicase II [Haemophilus influenzae PittAA]
 gi|145267645|gb|EDK07643.1| DNA helicase II [Haemophilus influenzae PittAA]
          Length = 726

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 192/551 (34%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +  +       
Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDFKT------ 277

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 278 ---ETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 526 DDAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTISYAESRR 622


>gi|146313611|ref|YP_001178685.1| DNA-dependent helicase II [Enterobacter sp. 638]
 gi|145320487|gb|ABP62634.1| ATP-dependent DNA helicase UvrD [Enterobacter sp. 638]
          Length = 720

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 101/581 (17%), Positives = 184/581 (31%), Gaps = 116/581 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRMLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST +IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTNNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGVDGEPISIYCAFNELDE-------ARFVVNRIKTWQDNGGALEK----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQVSMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQAARERQLTLWQSCRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            I+ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FIELIDALAQETADMPLHVQTDRVVKDSGLRMMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            ++L +          K         + +         +++
Sbjct: 607 MEKLTLTYAETRRLYGKEVYHRPSRFIGELPEACVEEVRLR 647


>gi|85708952|ref|ZP_01040018.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
 gi|85690486|gb|EAQ30489.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
          Length = 771

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 109/640 (17%), Positives = 191/640 (29%), Gaps = 121/640 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y++  K     DF DL+++  ++ +K      +     Q   +IL+DE QDT+ 
Sbjct: 189 AEFYRLYQDRLKALNACDFGDLMLHMLNIFRKH---TDVLADYQQRFKYILVDEYQDTNA 245

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+  +R L +          S + +  VGD+ QSIYS+ GAE   +LR ++        
Sbjct: 246 VQYLWLRLLAQ----------SHKNICVVGDDDQSIYSWRGAEVANILRFEKDFP----- 290

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 ++ L  ++RST  IL     +          +                     L
Sbjct: 291 ---GAHVVRLEQNYRSTPHILGAASGLIRANSQRHEKT---------------------L 326

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W      +          W +  +           ARR++  I  +              
Sbjct: 327 W---TEVNGGDKVRVIGVWDAPEE-----------ARRVSEEIERLEREGAPLDQ----- 367

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                + +LVR +  T               I+      F   +   I+D +A  R I  
Sbjct: 368 -----VAILVRAQYQTREFEDRF----IQTGINYRIIGGFRFYERAEIRDALAYLRVIAQ 418

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHV----- 484
            +DDL+F  +   P        + K+    R     +     + A+      +       
Sbjct: 419 PQDDLAFERIYNQPKRGLGAKTLEKMHQHARRVGMPLAAASLELADSDELPKRAANTIGS 478

Query: 485 -IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            ++        ++  +P D   L+L          +    E     + L E        E
Sbjct: 479 LMRSFLAWREASEQMTPSDLLRLVLDESGYNDMLAADRSAESAGRAENLSELARAMEEYE 538

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L   LE     +        + V IMT+H AKGLE   VF V     VF  
Sbjct: 539 T--------LGDFLEHVSLVMDNDRGDEEDTVTIMTIHAAKGLEFDHVFCVGWEEGVFPS 590

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                  I     ++ EE  RL YV +TRA  
Sbjct: 591 QR--------------------------------AIDEGGLASLEEERRLAYVAITRARR 618

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           + +I   +N     +         + +        ++  +T   +       E       
Sbjct: 619 RCMILHAANRRIYGQWTSSIPSRFIEELPEEH-IEQETTMTGGASLWRANWSENEDPFAH 677

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                 +    +    Q+     + P +  + EP     S
Sbjct: 678 VARDRPDRAQARGPGWQRAVATGYEPRQKRVAEPGRSAAS 717


>gi|157373608|ref|YP_001472208.1| DNA-dependent helicase II [Shewanella sediminis HAW-EB3]
 gi|157315982|gb|ABV35080.1| DNA helicase II [Shewanella sediminis HAW-EB3]
          Length = 721

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 101/597 (16%), Positives = 198/597 (33%), Gaps = 116/597 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+E+  +  ++DF ++++  ++L   +     +         +IL+DE QDT+ I
Sbjct: 172 QIYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---VLQHYQDRFKNILVDEFQDTNAI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + +      K     
Sbjct: 229 QYAWIRVLAGD----------SANVMIVGDDDQSIYGWRGAQVENLHKFLVDFPK----- 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL   +++ +      G                       LW
Sbjct: 274 ---AETIRLEQNYRSTGHILKASNELIANNPERLGKK---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +Q S    F+ + +       AR I   I++                
Sbjct: 310 -------TEDKDGEQISLYCAFNEMDE-------ARFIVGRINDWHDMGGDL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    + ++            ++          +   IKD M+  R I ++
Sbjct: 348 --SSCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMSYLRLINNK 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHV 484
           +DD +F  ++ +P        +  +  T R +  T+++   +       +    +  +  
Sbjct: 402 DDDAAFERVVNTPARGIGGRTLDILRSTARQQELTLWQTCLRALEEKLLSGRAANAVRGF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-E 540
           +  I E+       + H     ++     +  + +  G +     + LDE +        
Sbjct: 462 MDLIVEMQQDTDEMTLHRTTDHVIRESGLKAMYEAEKGEKARSRVENLDELVTAARTFIM 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 + EL + L        +    A  + V++MT+H+AKGLE PVVF+      +F 
Sbjct: 522 PEDSEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPVVFMSGVEEGIFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           +E  RL YVGMTRA 
Sbjct: 582 SQMAMDEG----------------------------------DRLDEERRLCYVGMTRAM 607

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           ++L I          + N       + +         ++K   +  +    ++  ST
Sbjct: 608 EKLYITYAETRRIYGRENFARPSRFIKEIPTEHVEEIRLKTQVTAPQRAKPSFSRST 664


>gi|134097674|ref|YP_001103335.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291006367|ref|ZP_06564340.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910297|emb|CAM00410.1| probable ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL
            2338]
          Length = 1078

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 139/1047 (13%), Positives = 275/1047 (26%), Gaps = 199/1047 (19%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R  +             W L +  VS   + +         T    +   + A      +
Sbjct: 130  RVPVEPGARLLT-ETAAWQLAHRVVSTWTEDLDTDKVPSTVTGYLLSLAGELAEHLVRPD 188

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            +  +   +   T +  P+      E+ K    +                         +T
Sbjct: 189  DLRAHAEALCRTIENAPRAKRQKAELPKDLQKVV------------------------AT 224

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                     L A Y + K++   +DF D +     L  +      +     +    +L+D
Sbjct: 225  QRLRVALLPLLAEYAQRKRREAAMDFADQMSLAAGLAAEHP---EVVAGERERFGAVLLD 281

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT   Q  ++RSL                + +VGD  Q+IY + GA    + R    
Sbjct: 282  EYQDTGHAQRVLLRSLFG--------QGRTMPVTSVGDPAQAIYGWRGASAANLPRFTTD 333

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              K +           L  SFR+  ++L V + V +                        
Sbjct: 334  FPKDSMA---PARRYGLLTSFRNPPEVLRVANAVSA------------------------ 366

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                        +  + +    ++   +    +            +A  I+        +
Sbjct: 367  --------PLREAGLEVEELRAKDGAEAGDIRVALADDVRQERDWVADRIAA------QW 412

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                    +     VLVR+R D   +    R    D  + V       L D   ++DL++
Sbjct: 413  HAALDENGRPPTAAVLVRRRADMADLAAALR----DRGLPVEVVGLGGLLDEAEVRDLVS 468

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI------------ 470
              R ++      + + +L    +     DI  +    R   E  +               
Sbjct: 469  ALRMLVDPLAGTAAMRLLTGSRWRLGAADIAALWDRARELGERAFGAPESEDPTAAVAAA 528

Query: 471  ---------------------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                                 ++++  G  + + + + +  L          +    +  
Sbjct: 529  LPGEHAEQAGLVDALDDPGNAERYSEPGYQRIRRLGRELANLRRRL-EQPLPELVADVER 587

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQY----PPTIKRA 564
                  + +SR G      LD F +        S  ++L  L+  L              
Sbjct: 588  TLLLDIESLSRPGGAGRIHLDAFADVVTDFATASPSATLPALLDYLAAAERAEDGLEPGE 647

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM-------------PS 611
                 + V+++TVH AKGLE  VV L      VF  K      +                
Sbjct: 648  VEVADDRVQVLTVHAAKGLEWEVVALPHLVRDVFPGKRKASSWLRAVTELPARLRGDAQD 707

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            L       +     K     +       +     E  RLLYV +TR+   L++  H    
Sbjct: 708  LPRLDLDRLQGMDRKEIVEALEAHDDEFEDRRLTEERRLLYVAVTRSERSLLLSGHWWAE 767

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----- 726
               K    + + +          V  ++  +    ++              P++      
Sbjct: 768  GGDKPKGPSDFLLQLAEVVKSPDVGVVEQWSPQPPEDAPNPLAEAVRSAEWPVDPLGTRR 827

Query: 727  ----------------------------------EETIKQLMDEQKIPKKLFSPIKNDIN 752
                                              +  + +     +   ++  P    ++
Sbjct: 828  DAVAEGANLVLAALDAVDSAAPDEEDEDGWARDVDVLLAERAAAARRRDQVRLPEHLSVS 887

Query: 753  EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
            +   L         +         N    RG   H  L+  FT                 
Sbjct: 888  QLVELADDADALARRLRRPLPYPPNPMTRRGTAFHSWLEHRFTSTA-------------- 933

Query: 813  AKLWPAKEYKNLLLSITRLLEN-PMMTTAMSCDSYSE---VSVSGKINCPKKDIIISGRI 868
              L    E            ++  M+  A    S++E     V        + +++ GR+
Sbjct: 934  --LLDFDELPGAADESATPHDDLEMLQQAFLAGSWAERTPHRVEVPFETQVEGVVVRGRM 991

Query: 869  DQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLI 925
            D +         + ++KT      +          QL+ Y          P + +     
Sbjct: 992  DAVFADSDGGWTVVDWKTGAVPAGD---QVRALSVQLAAYRLAWSALSGAPLEKVRAAFH 1048

Query: 926  YVSEPKVFIIPQNKLNKAFAEISTKIP 952
            YV   +          +   E+   +P
Sbjct: 1049 YVRHDRTLRPADLLDAEGLRELLRSVP 1075


>gi|296327497|ref|ZP_06870043.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155323|gb|EFG96094.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 739

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 106/546 (19%), Positives = 182/546 (33%), Gaps = 117/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y  A  ++  +DF D+++NT  LL+K +    I  K+  +  +I+IDE QDT+ +
Sbjct: 171 EVYDKYNRALLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 226

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +          
Sbjct: 227 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYNN----- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I++L  ++RST  IL   +++    ++++                        LW
Sbjct: 272 ---AKIVKLEENYRSTTTILDAANELIKNNKSSKDKK---------------------LW 307

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              +  +   + S       RI   I                 +
Sbjct: 308 -------TQNGKGDLIKVLACDNGRDEVS-------RIIEFIRENHQNG----------V 343

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D+ +L R    + +           Y I               IKD++A    I++ 
Sbjct: 344 AYRDMTILYRTNAQSRIFEEGL----LRYSIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 399

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHV 484
           +D+L+   ++  P     E  I KI    R     + E +            G  K   +
Sbjct: 400 QDELNLQRIINVPKRKVGEKGIEKIITYARENNLNLLEALSHIKEISGLTVVGKEKLLEM 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN 542
              I EL  ++   +       ++   K        +      I+ +DEF N  L  E  
Sbjct: 460 YDIIKELKDLSYTETTSYIVQTLIDKIKYIDYIKDNYDDAEARIENIDEFKNSILELE-- 517

Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      L   LE     +         + V++MT+H +KGLE P+VFLV   +++F   
Sbjct: 518 NVVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGT 577

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +   EE  RL YV +TRA  +
Sbjct: 578 ----------------------------------RAMFDEKEMEEERRLCYVALTRAEKK 603

Query: 662 LIICKH 667
           L +   
Sbjct: 604 LYLSHA 609


>gi|145633082|ref|ZP_01788814.1| DNA helicase II [Haemophilus influenzae 3655]
 gi|144986308|gb|EDJ92887.1| DNA helicase II [Haemophilus influenzae 3655]
          Length = 726

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 192/551 (34%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 276 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 526 DDAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTISYAESRR 622


>gi|46445668|ref|YP_007033.1| ATP-dependent DNA helicase [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399309|emb|CAF22758.1| probable ATP-dependent DNA helicase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 761

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 104/582 (17%), Positives = 186/582 (31%), Gaps = 121/582 (20%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
            ++   +   +  + N +   + T        ++ A Y++  ++   +DF+DL+  T  +
Sbjct: 171 FRQMISQAKNMLQQPNPHYDKEVTSDFDEAFPHVYALYQKKLQEYQAVDFDDLLFLTAKI 230

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            ++      +          +LIDE QDT+ +Q+ +   L E            R LF V
Sbjct: 231 WREYPS---VLNYYQDRWPFVLIDEYQDTNAVQYTMTTLLVE----------KRRNLFVV 277

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  QSIYS+ GA  + +L  +R              +I+L  ++RS  +IL   + + S
Sbjct: 278 GDPDQSIYSWRGANVQNILNFERDYP--------GAKVIQLEQNYRSRTNILNAANALIS 329

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
              N                         +LW ++ +    +              L   
Sbjct: 330 HNTNRFEK---------------------ELWSELGAGEKVK--------------LFIG 354

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A  +A  I           + K+  I   ++++  R    + +           
Sbjct: 355 DDDRAEAEFVASQI---------SYHHKEHQISLSEMVIFYRTNAQSRVFEDYL----LY 401

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I  V            IKD++A  RF  S  D ++F   +  P     E  I KI   
Sbjct: 402 RGIPYVIVGGISFYQRREIKDILAFLRFAQSGADFVAFARTINLPKRGLGETTIEKIRQS 461

Query: 460 RHETETVYEYIQK-------------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
            +E         +                         +  + EL  +++  S  +    
Sbjct: 462 ANEERMTIYAFCEALLKNTPMKSIVRLTAKQREGLTEYLAIVQELRTLSKAGSVRELVLA 521

Query: 507 ILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKR 563
            +   K     +       +  + LDE +   +  E   +  SL+  + EL         
Sbjct: 522 AIEKTKYLNYLMEDKESYEDRRENLDELITKAVEWEISATDPSLEAFLEELSLKSSLD-- 579

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             +     + +MT+H  KGLE    FLV     +F H + K                   
Sbjct: 580 EANQAVERLSLMTIHNGKGLEFTTTFLVGLEEDLFPHVNSKN------------------ 621

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                            +   EE  RL YVG+TRA + L + 
Sbjct: 622 ----------------NREDVEEERRLCYVGITRAKEYLYLS 647


>gi|254292798|ref|YP_003058821.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
 gi|254041329|gb|ACT58124.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
          Length = 793

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 112/654 (17%), Positives = 194/654 (29%), Gaps = 125/654 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+   +     DF DL+++   + +K      I     +   +IL+DE QDT++ 
Sbjct: 199 EIYKTYQHRLRVLNACDFGDLLMHCIAIFQKSPD---ILADYHKRFKYILVDEYQDTNVA 255

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +              +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 256 QYLWLRLLAQ----------GTGNICCVGDDDQSIYGWRGAEVDNILRFEKDFP------ 299

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RSTA IL     + +  ++  G +                       
Sbjct: 300 --GAKVIRLERNYRSTAKILACASHLITANQDRLGKTLH--------------------- 336

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      +         +D   +       AR I   I +   +            
Sbjct: 337 -------TEDEDGDAVKVRGLWDGEAE-------ARLIGEDIESWRSSGR---------- 372

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  +  V+VR      L       L     I           +   I+D MA  R I S+
Sbjct: 373 KYAECAVMVRASWQMRLFEERFIML----GIPYKVIGGPRFFERAEIRDAMAYLRLIRSE 428

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-------VYEYIQKFANCGISKFQHV 484
            DDL+F  ++  P        I KI     E E        +     +      +  +  
Sbjct: 429 NDDLAFERVVNQPKRGVGATSIQKIQVVAREMERPLTVTAEIMLRGNEIRGKAQTGIRAF 488

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
           +  +      A+         +IL          +    +     + L E +      E 
Sbjct: 489 LNDLERWRAQAREMEHPRIMEIILDESGYTAMLKADKTPQAQTRLENLKELVRAMGEFE- 547

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               SL   +  +E          + + ++V+I+T+H AKGLE P VFL     +VF  K
Sbjct: 548 ----SLNAFMEHVELVMDAS--QGNESDDQVQILTLHGAKGLEWPQVFLPGWEEEVFPSK 601

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I      + EE  RL YVG+TRA ++
Sbjct: 602 R--------------------------------AIDEGGIKSLEEERRLAYVGITRARER 629

Query: 662 LIICKHSNT----SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             I   +N       +     R   ++  +              + +N   +        
Sbjct: 630 CYISFVANRMIFGRWQSVMPSRFVDELPPEHVDAVSETGYSAAPDGLNSAGFGGVSRFDS 689

Query: 718 HPE--NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                 +  E     +          +           P  +NPS   T     
Sbjct: 690 DESFGGSTYESPGWKRAQAARNTTDGRAQYGNWPQKKRPPDINPSGRLTATSDP 743


>gi|304392202|ref|ZP_07374144.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130]
 gi|303296431|gb|EFL90789.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130]
          Length = 860

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 107/573 (18%), Positives = 176/573 (30%), Gaps = 130/573 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y++  K     DF DL++    L K+      +  +  +   +IL+DE QDT++
Sbjct: 202 RELYRAYQDRLKILNACDFGDLLVECIRLFKENPD---VLLEYRERFKYILVDEYQDTNV 258

Query: 191 IQWEVIRSLTE----------------------DFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            Q+  +R L                        +        ++   +  VGD+ QSIY 
Sbjct: 259 AQYLWLRLLAGKGDSASKSASDNPAVLSSPDNIEPTKQIADDTTEPNICCVGDDDQSIYG 318

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GAE   +LR  +              +I+L  ++RST  IL     + +  E   G +
Sbjct: 319 WRGAEVDNILRFDKDFP--------GSKVIKLERNYRSTTHILKAASHLIAHNEGRLGKT 370

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             +  T                                    +    +     +   AR 
Sbjct: 371 LFTDDTDT---------------------------------DAPKVKVAAGWDSEEEARA 397

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I  +                  DI +L+R              L     ++     
Sbjct: 398 IGEEIEAVQRKGHAL----------NDIAILMRASFQMREFEDRFVSL----GLNYRVIG 443

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                + L I+D MA  R +    DDL+F  ++ +P     +  I KI    R     + 
Sbjct: 444 GPRFYERLEIRDAMAYFRVVCQPADDLAFERIVNTPKRGLGDTTIKKIRDHARVRRIPML 503

Query: 468 EYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
             +Q      +         + +         +    S  D   +IL      + + +  
Sbjct: 504 VAVQEMVETSELGAKQRGTLKTLALNFERWAQLIDSTSHTDLAEIILDESGYTEFWQNDR 563

Query: 522 GNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
             E    +D L E +      E         L   LE     +   ++ N + V +MT+H
Sbjct: 564 SAEAPGRLDNLKELVRSMHEFEN--------LRGFLEHVSLVMDTENNPNLDAVTLMTLH 615

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGLE   VFL      +F H+                                     
Sbjct: 616 GAKGLEFDTVFLPGWEEGLFPHQRSLD--------------------------------E 643

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             +S  EE  RL YVG+TRA     I   SN  
Sbjct: 644 GGRSGLEEERRLAYVGITRAKKNCHIWFVSNRR 676


>gi|311739798|ref|ZP_07713632.1| superfamily I DNA and RNA helicase [Corynebacterium pseudogenitalium
            ATCC 33035]
 gi|311304871|gb|EFQ80940.1| superfamily I DNA and RNA helicase [Corynebacterium pseudogenitalium
            ATCC 33035]
          Length = 1059

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 139/959 (14%), Positives = 273/959 (28%), Gaps = 150/959 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIK 109
              ++  +     +   + ++   L         +     I + + D +  +         
Sbjct: 153  DVVRNYTGQLEDDRALATITETLLKFSQDIDNGLKDTSHIAEHARDFRADIDNLDKSQKN 212

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
              +       +  T         L    ++ + +  V+ F + +     + +   V   +
Sbjct: 213  GPEYSKALLGYIQTQERRVQYVPLLEALKKEQSERQVITFGEQMAVAARVARDHPV---V 269

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              +  Q    +++DE QDTS  Q  ++RSL               ++ AVGD  Q+IY +
Sbjct: 270  GKQQSQRYKVVMLDEYQDTSYAQRVLLRSLF-------GGDQEDLSVTAVGDPMQAIYGW 322

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA  + +              G      +L  S+R+ +  L + + V            
Sbjct: 323  RGATSENLTAFVEDFPV---APGTSAPKDQLTTSWRNPSGALDLANSVAEGVFEGVERPV 379

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            D  +   H+       G +QL        + +   +                        
Sbjct: 380  DELSAAPHK-----GEGEIQLAYFESEVREREFVAE------------------------ 410

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                        +    +KR        VLVRK + +  I        +   +       
Sbjct: 411  -----------YLKEQWEKREGDTFSAAVLVRKNRHSAPIAAAL----DKAGVPNEIIGL 455

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              L     I+DL+A+   ++  ED  + V +L  P+      DI  + +++       E 
Sbjct: 456  GGLLWQPEIQDLVAIATMLVRPEDLPAAVRLLAGPICGLGISDIQALASRQRNLAGAREE 515

Query: 470  IQKFANCGIS-----------------------------------------KFQHVIKYI 488
              ++                                               + + V   +
Sbjct: 516  RLRWEPGMDPEDYLRAQLEDVTAEEPDQRVGLADALADLGERDRYTPQGLARMEEVSAKL 575

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSL 547
              L   +      D F  I      R + ++R        LD+F +       +S Y+ L
Sbjct: 576  RHLRTYSLSKPLVDIFADIEALFNIRTEVLARGSAGGATHLDKFADIVAGFHGDSLYALL 635

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV---FSHKHIK 604
                  LE+          A  + V+IMT H AKGLE   V +V   S      +   + 
Sbjct: 636  DYFALALEKEDGLDLGEVPAATDRVQIMTAHKAKGLEWEHVCVVHADSSSYSAKAETFLS 695

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            ++  +P  +D   +P    +     N   +  K       EE  RL YV +TR    L +
Sbjct: 696  RIDKVPGDDDYIEVPEDAQKRSHFQNACEEFKKADSAIKAEESARLFYVALTRTESTLTV 755

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA------------- 711
                  +   K+ +  +  +        + V +  + +  ++D++               
Sbjct: 756  TGSGTNNLNGKNKKAPYEYLERLKEQFPQYVVEWSVPDEPSEDDFGESAQFPALQASPEA 815

Query: 712  -------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST--- 761
                    E     P+ +  E  E  +Q         K       D+  P  L  S    
Sbjct: 816  VAGADLVLEAMEELPDLSRGETFELWEQEAGALIEEYKALQQPVVDVELPSELTASDMVA 875

Query: 762  -----IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
                 +    +         N    RG   H  L+         R         +     
Sbjct: 876  LRADPLQFARRQRRPVPFKPNSYAKRGTAFHAWLE--------DRFGSPALLGEEELPGI 927

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQ 875
               E  +L       L +         +   E  V         + ++ GR+D +     
Sbjct: 928  DEPEDFDLEELKEAFLNSEW------AERQPEH-VEAPFEITIGESVVRGRMDAVFRLED 980

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
                + ++KT      E          QL++Y +  +  +  + +     YV +   F 
Sbjct: 981  GTWMVVDWKTGRPPQGEAMDAA---KIQLAVYAEAWRRIHGGEKIRAAFYYVHDGYTFE 1036


>gi|327395040|dbj|BAK12462.1| exodeoxyribonuclease V beta chain RecB [Pantoea ananatis AJ13355]
          Length = 1179

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 152/975 (15%), Positives = 293/975 (30%), Gaps = 147/975 (15%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEER 65
            + N       K  W      V  +     +   + +   L    A+  Q A       + 
Sbjct: 224  AANLERINALKQQWQAASADVEGLISASGVDKRSYSSKHLPNWVAKVTQWALDDTLDYQL 283

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L  F          +  T++       L + + +   E + +RD             
Sbjct: 284  PKELERF-----GQQVLHEKTKKGEAPQHALFDAVDRFLAEPLTLRDVI----------- 327

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                   +    +  K++  +L F+DL+   ++ L++    A +   I       LIDE 
Sbjct: 328  IWQALTEVREAVQREKRQRALLGFDDLLSRLDEALQQPG-GALLAETIRGRFPVALIDEF 386

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT   Q+ + R+L          H     L  +GD KQ+IY+F GA+    LR +    
Sbjct: 387  QDTDPQQYRIFRTLY--------LHQPELALLLIGDPKQAIYAFRGADIFTYLRARSEVS 438

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
               T          L  ++RS+ D++  V+++FS  ++    S      +   +      
Sbjct: 439  AHYT----------LDTNWRSSPDMVDSVNRLFSQVDSPFLFSSIPFLPVSPAAPNQA-- 486

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---- 361
                    +   +  Q  P    W    + +        +A++ A  IS  +        
Sbjct: 487  --------LKLIYQQQPQPALRFWLQPGEGVGVSDYQQFMAQQCAADISRWLVAGQQGQA 538

Query: 362  -IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             I      + ++A DI VLVR R +  LI      L      SV  + R  +      ++
Sbjct: 539  LIGKGDALQPVKASDITVLVRSRNEASLIRDALNSLSIP---SVYLSSRDSVYTTPEARE 595

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+ L + + S E +      L + +F     ++  +       + + E            
Sbjct: 596  LLWLLQAVQSPEQERLLRSALATSIFAIDAAELDALAQNERHWDALVEQFV--------S 647

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---L 537
            +Q +      L  +            +L +  G ++            L E L      L
Sbjct: 648  WQQIWHQRGVLPMLRDVMITRQLAENMLASDNGERRLTDLM------HLGELLQEAAVQL 701

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +       L + I+  +    + +    ++ + V+I+T+H +KGL+ P+V+L       
Sbjct: 702  DSTHALVRFLAQQIARPDSQAASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAG-- 759

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                                       +          +   ++    E  RLLYV +TR
Sbjct: 760  -----------FREAASALYHDRESFAAMLDVQGDEYSLTLAEEERLAEDLRLLYVALTR 808

Query: 658  ASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL-------TNSI 704
            +          +I      + E   ++     +V      D       L          I
Sbjct: 809  SVHHCSVGIAPLIKGARKKAGESDLHKSALGYLVQRGEIADAAQLSQHLQALEGAGIEVI 868

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
            +        W      N  L   E  + L D  ++                 L    ID 
Sbjct: 869  SSALQPGAIWHEGLGSNDALSSREMTRALADSWRVTSYSGLQQHGSSPLLDALPKFDIDA 928

Query: 765  KGKTNLES-----LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
             G+T  E           +    G  +H L + I      +   ++     +N       
Sbjct: 929  AGETADEEDTLLTPHHFPRGAAPGTFLHGLFESIDFTEPPE-ALWLEDQLQQNGYSLS-- 985

Query: 820  EYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK------------------- 854
                +   I R+L  P+      +++  S D   E+                        
Sbjct: 986  WLPVIQQWIARVLTTPLNKEGVTLSSINSRDRLIEMEFYLPINNLLTATDLDALVRRYDP 1045

Query: 855  -------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY--------- 898
                   ++  +   ++ G ID +   Q   ++ +YK++        + P          
Sbjct: 1046 LSQRGPALDFRQVKGMLKGFIDLVFRWQGKYYLLDYKSNWLGESHAAYTPEAMEQAMIDH 1105

Query: 899  THIAQLSIYEKILKD 913
             +  Q  +Y   L  
Sbjct: 1106 RYDLQYQLYTLALHR 1120


>gi|293416064|ref|ZP_06658704.1| exodeoxyribonuclease V [Escherichia coli B185]
 gi|291432253|gb|EFF05235.1| exodeoxyribonuclease V [Escherichia coli B185]
          Length = 1183

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 278/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 309  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 368  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 420  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 470  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +  + R ++A DI VLVR R++   +      L+ 
Sbjct: 520  TMAQVCAAQIRDWLQAGQRGEALLMNGDEARPVRASDISVLVRSRQEAAQVRDALTLLEI 579

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 580  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 637  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 689  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 743  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            ++  +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 790  VELAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 850  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 909

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 910  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 970  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1026

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123


>gi|237807125|ref|YP_002891565.1| DNA helicase II [Tolumonas auensis DSM 9187]
 gi|237499386|gb|ACQ91979.1| DNA helicase II [Tolumonas auensis DSM 9187]
          Length = 729

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 110/705 (15%), Positives = 215/705 (30%), Gaps = 131/705 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    I + L     F    +       +             L +  Q    +++  
Sbjct: 66  AAAEMRGRIERLLGNSLGFGRGGMWIGTFHGLAHRLLRAHPLDANLPEDFQIIDSDDQLR 125

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL           ++ +                +         +D               
Sbjct: 126 LLKRILRNLNLDEKQWVP---------------RAVAGYINSKKDEGLRPHHIDVYDPVG 170

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              + + A Y+E   +  ++DF +L++  ++L   +     +     Q   HIL+DE QD
Sbjct: 171 RTYQKIYATYQETCDRAGLVDFAELLLRAHELWLHKPH---LLEHYQQRFRHILVDEFQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ+  IR L  D             +  VGD+ QSIY + GA  + + R  +     
Sbjct: 228 TNGIQYAWIRMLAGD----------SSKVMIVGDDDQSIYGWRGARVENIQRFMQDFD-- 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST+ IL   +++ +      G                     
Sbjct: 276 ------DVQTIRLEQNYRSTSTILKAANQLIANNSARLGK-------------------- 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +LW             +  S  + F+ + +       AR +   +              
Sbjct: 310 -ELW-------TDGVAGESISVYAAFNEIDE-------ARFVVSRLKAWREQGNSLL--- 351

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  +L R    + ++           ++           +   IKD +A  R 
Sbjct: 352 -------DAAILYRNNAQSRILEEAL----MQEQLPYRIYGGLRFFERQEIKDAIAYLRL 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISK 480
           + +  DD SF  ++ +P     +  +  I    R  +  +++   +       A    + 
Sbjct: 401 LSNHSDDASFERVVNTPTRGIGDRTLGLIREAARDRSLNLWQSAWQLCEQGVLAGRAANA 460

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTL 537
            ++ +  I++L         H     ++        + +  G      I+ L+E +N T 
Sbjct: 461 VRNFLALINQLETDTSELPLHVQVDRVIRQSGLWTHYENEKGEKGQSRIENLEELVNATR 520

Query: 538 RNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                  Y  +  L + L         +        V++MT+H+AKGLE P+VF+V    
Sbjct: 521 LFRPAEEYLDMSPLTAFLAHATLESGDKQADEFDEAVQLMTLHSAKGLEFPLVFMVGVEE 580

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F  +   +                                       EE  RL YVGM
Sbjct: 581 GMFPSQQSSEEPG----------------------------------RLEEERRLCYVGM 606

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           TRA  +L +    +     K +       + +   +     +++ 
Sbjct: 607 TRAMQKLYLTHAESRRLYGKESYNRPSRFLKELPSDCLEEIRLRT 651


>gi|154245373|ref|YP_001416331.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154159458|gb|ABS66674.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 817

 Score =  277 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 113/658 (17%), Positives = 204/658 (31%), Gaps = 119/658 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+   K    +DF DL++    L ++      +  +  +   ++L+DE QDT++ Q
Sbjct: 209 LYAAYQARLKALNAVDFGDLLLEGIRLFRENPD---VLAEYHKRFKYLLVDEYQDTNVAQ 265

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R L +            + +  VGD+ QSIY + GAE   +LR +           
Sbjct: 266 YLWLRLLAQ----------GSKNVCCVGDDDQSIYGWRGAEVDNILRFESDFP------- 308

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +I L  ++RST  IL     + +  E   G +  S                     
Sbjct: 309 -GAKVIRLERNYRSTGHILASAAHLIAHNEGRLGKTLFS--------------------- 346

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +Q + T  +DS  +       AR +   I  +               +
Sbjct: 347 -------EGEDGEQVTVTGAWDSGEE-------ARAVGEEIEALQRAGH----------K 382

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +I +LVR              L     +           +   I+D +A  R + S  
Sbjct: 383 LSEIAILVRASFQMREFEDRFVTL----GLPYRVIGGPRFYERAEIRDALAYLRCVNSSA 438

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DDL+F  ++  P     +  + +I    R     + E  +      +      +  + V+
Sbjct: 439 DDLAFERIVNVPKRGIGDATVKQIHDVARAVGLPLQEATRVLTESEELKPKVRATLRGVV 498

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           +        A+  S  +   ++L      + +      E    L+         E     
Sbjct: 499 EAFGRWREQARVLSHTELAEIVLDESGYTEMWQKDRSAEAAGRLENLKELVRSME----- 553

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             + L   LE     +   + A  + V+IMT+H+AKGLE   VFL      +F H+    
Sbjct: 554 PFENLSGFLEHISLVMDTDNGAGEDAVQIMTLHSAKGLEFDTVFLPGWEEGLFPHQR--- 610

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                         +    K+  EE  RL YVG+TRA       
Sbjct: 611 -----------------------------ALDEQGKAGLEEERRLAYVGITRAR-----A 636

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                    +     W   V   F ++     +++  S     W    +       +  +
Sbjct: 637 SARIFVASNRRIHGMWNSTVPSRFLDELPDAHVRVEESRGGAGWGGSSYGGGSYGQSRFD 696

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
           R E            ++  +         +    S     G +          +  RG
Sbjct: 697 RAEPFSASSYSTPGWQRAQANRGRTDQGGFAGASSGSSRSGFSERGGRYDAGGSARRG 754


>gi|302346510|ref|YP_003814808.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica
           ATCC 25845]
 gi|302150595|gb|ADK96856.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica
           ATCC 25845]
          Length = 851

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 113/689 (16%), Positives = 197/689 (28%), Gaps = 124/689 (17%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                      +     +   +   YE   ++   +DF+D+++ T  L +       IR 
Sbjct: 164 AEDRAAIERDRSARMPAI-HMIYKAYEARCRQANAMDFDDILLYTFLLFRDN---KEIRE 219

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           K  Q+  +IL+DE QDT+  Q  +I  L E          + R +  VGD+ QSIYSF G
Sbjct: 220 KYGQQFEYILVDEYQDTNYAQVSIISQLAE----------THRRICVVGDDYQSIYSFRG 269

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A    +L  K               + +L  ++RST  I+   + +    E         
Sbjct: 270 ANIDNILDFKHKFD--------DAKLFKLERNYRSTQLIVQAANSLMKHNE--------- 312

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
              I          G   L++   S  +                          A  +A 
Sbjct: 313 -RQIPKDVFSKEAEGDKILYKPCYSDRE-------------------------EAMVVAN 346

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +  +   D              +  +L R    +       R       I         
Sbjct: 347 ELKRIKRND---------DCDYGNFAILYRTNAQSRSFEDEFR----KQGIPYKIIGGLS 393

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE-- 468
                 IKD++A  R + +  D+ +F  ++  P        I K I   +  + +++E  
Sbjct: 394 FYQRKEIKDIIAYFRLVSNPNDEEAFRRIINYPTRGIGNTTIQKIIDCAQRNSVSLWETI 453

Query: 469 -----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                Y        ++K       I   I        ++    I+          S    
Sbjct: 454 LNPIQYGLDVNKGTMTKLFAFRTLISGFIKNVALKDAYELGKEIIEESGLSADIRSGSEP 513

Query: 524 E---VIDVLDEFLNFTLRNEQNSYSSLQE----LISELEQYPPTIKRAHSANH-NEVRIM 575
           E     + L+EF++       +     +E    L   L++           +   +V +M
Sbjct: 514 EDLARRENLEEFMSAMQGFVDSGREEGREENVYLTDYLQEVALYTDADKEDDDTPKVTLM 573

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE P VF+V     +F                                     
Sbjct: 574 TIHAAKGLEFPTVFVVGLEENIFPSPMS-------------------------------- 601

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHND 692
                K   EE  RLLYV +TRA    I+    N     + +  N   + +    +  + 
Sbjct: 602 --ASSKREIEEERRLLYVAITRAERHCILTNAKNRFRYGSMQVDNPSRFLNDFDPALIHV 659

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           E            K  W     S +       E      +        +      +   +
Sbjct: 660 EDEANSAFGGERRKMPWDEDNSSRNAWGRNRSEDNFREYEPNKAYTGSRPWGQEYRQMGS 719

Query: 753 EPYILNPSTIDTKGKT-NLESLLSDNQTF 780
                NP     +       +     +  
Sbjct: 720 RWQNSNPVASQFRADPKPKITERKRPEAA 748


>gi|304410803|ref|ZP_07392420.1| DNA helicase II [Shewanella baltica OS183]
 gi|307305026|ref|ZP_07584776.1| DNA helicase II [Shewanella baltica BA175]
 gi|304350700|gb|EFM15101.1| DNA helicase II [Shewanella baltica OS183]
 gi|306912428|gb|EFN42852.1| DNA helicase II [Shewanella baltica BA175]
          Length = 722

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 96/551 (17%), Positives = 185/551 (33%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     +         HIL+DE QDT+ IQ
Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQDRFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L                +  VGD+ QSIY + GA+ + + R  +          
Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLKDFP------- 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L  ++RS  +IL   + + +      G                      +LW 
Sbjct: 273 -SATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + +    S    F+ + +       AR I   I++                 
Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            ++          +   IKD M   R I +++
Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYLRLINNKD 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +  T R    T+++   +       A    +  +  +
Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQHELTLWQASVRLLDEKVLAGRAANSVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541
             I  +    Q    +     ++ A   +  + +  G +     + L+E +      E  
Sbjct: 463 DLIMTMREDTQDMVLYRMADTVIQASGLKVMYEAEKGEKAHARIENLEELVTAARTFEMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL   L        +    A  + V++MT+H+AKGLE  +VF+      +F  
Sbjct: 523 EELEDMGELNGFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                      +    +E  RL YVGMTRA +
Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 609 KLYITYAESRR 619


>gi|317049330|ref|YP_004116978.1| exodeoxyribonuclease V subunit beta [Pantoea sp. At-9b]
 gi|316950947|gb|ADU70422.1| exodeoxyribonuclease V, beta subunit [Pantoea sp. At-9b]
          Length = 1179

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 132/878 (15%), Positives = 275/878 (31%), Gaps = 124/878 (14%)

Query: 101  KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
            +          D F    +    L        + A   + K+ + +L F+DL+   ++ L
Sbjct: 302  EAPHHALFTAIDHFLAQPITLRDLVIARALTEVRAAVRKEKRLHALLGFDDLLSRLDEAL 361

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            ++   +  +   I Q     LIDE QDT  +Q+ +  +L          +     L  +G
Sbjct: 362  QQPGGAQ-LAEAIRQRFPVALIDEFQDTDPLQYRIFSTLY--------VNQPEHALLLIG 412

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D KQ+IY+F GA+    +R +       T          L  ++RS+  ++T V+++FS 
Sbjct: 413  DPKQAIYAFRGADIFTYIRARNDVSAHYT----------LDTNWRSSPPMVTSVNQLFSR 462

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             +     ++     +   ++             +    D Q       W    D      
Sbjct: 463  LDAPFLFADIPFLAVNFATANQA----------LTLNLDQQPQAALRFWLQPGDGCSVGD 512

Query: 341  SASILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
               +LA++ A  IS  +         +      R +QA DI VLVR R +  LI      
Sbjct: 513  YQQLLAQQCAADISRWLQAGQEQRAMLGKAPALRPVQASDITVLVRSRNEANLIREALNQ 572

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            L      SV  ++R  +      ++L+ L + IL+ E +      L + LF F    +  
Sbjct: 573  L---AIPSVYLSNRDSVYTTPEARELLWLLQAILAPEQERMLRTALATSLFAFDAAQLDM 629

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            +       + + +          +++Q + +    L  + Q          +L ++ G +
Sbjct: 630  LDQDARGWDQLVDTF--------ARWQLLWQQRGVLPMLRQMMLERQLAENLLASENGER 681

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNS---YSSLQELISELEQYPPTIKRAHSANHNEV 572
            +            L E L        +       L + I+  +    + +    ++ + V
Sbjct: 682  RLTDLL------HLGELLQEAASQLDSPHALVRHLAQQIARPDSQAASQQLRLESDRHLV 735

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +I+T+H +KGL+ P+V+L       F+    +    +    ++ G  + +          
Sbjct: 736  QIVTIHKSKGLQYPLVWLP------FAAGFREADTALYHDRENFGAVLDLQND------- 782

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC------KHSNTSNEKKSNQRTWYDMVY 686
               +   ++    E  RLLYV +TR+     +                  ++     ++ 
Sbjct: 783  EASLALAEQERLAEDLRLLYVALTRSVYHCSVGVAPLFRGTRKKEGASDLHKSALGYLLQ 842

Query: 687  DSFHNDE-------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                                 T  +   E  A  W         L   E  + L D  ++
Sbjct: 843  RGEAATASQLAMLLAEMNTDGTEVVLAGESDAMRWQAQAVSEEALSAREVTRMLADPWRV 902

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------DNQTFNRGLIIHKLLQVI 793
                            ++    +D  G    E   S        +    G  +H+L + +
Sbjct: 903  TSYSGLQQHGSSRLLEVMPGFDVDASGDAAGEPPPSALTPHHFPRGAAPGTFLHELFESL 962

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVS 850
                    +            L       + +  +     +     +    + D   E++
Sbjct: 963  DFTQPPTAEALEQHLQQNGYPLHWQPMLSDWIARVVSTPLDAQGIHLAGVQAQDRLVEMA 1022

Query: 851  V--------------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
                                       +  ++  +   ++ G ID +   Q   ++ +YK
Sbjct: 1023 FFLPIDGMLQAATLDALVKSHDTLSEQAPPLDFRQVQGMLKGFIDLVFRWQGKYYLLDYK 1082

Query: 885  THHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
            ++        + P           +  Q  +Y   L  
Sbjct: 1083 SNWLGDSHGAYTPQAMAQAMIDHRYDLQYQLYSLALHR 1120


>gi|254796731|ref|YP_003081567.1| DNA helicase II, UvrD/Rep family, N-terminal fragment
           [Neorickettsia risticii str. Illinois]
 gi|254589979|gb|ACT69341.1| DNA helicase II, UvrD/Rep family, N-terminal fragment
           [Neorickettsia risticii str. Illinois]
          Length = 481

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 107/546 (19%), Positives = 176/546 (32%), Gaps = 119/546 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+E  K+N  +DF DL+++   L  K    A    K  ++  +I++DE QDT+
Sbjct: 29  ALSVYDAYQEKLKENNSMDFGDLLMHNVTLFNKD---AETLEKYKEKFRYIMVDEYQDTN 85

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L Q+  +R L +              +  VGD+ QSIY + GAE   +LR  +  +    
Sbjct: 86  LCQYLWLRLLAQ----------KHSNICCVGDDDQSIYGWRGAEVGNILRFAKDFE---- 131

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT    V    ++       +                  
Sbjct: 132 ----GAKVIKLEQNYRSTNKILTAAHNVIKNNQSRLTKKLWTAYP--------------- 172

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          ++    +Y DS  +       AR I   I             +K 
Sbjct: 173 -------------GGEEIQIFTYMDSEQE-------ARAIIRMIKE-----------RKL 201

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
           V +  D  +LVR    T               +           +   I+D++A  R ++
Sbjct: 202 VCRYSDTAILVRAGFQTRAFEEA----AIHENVPYRVVGGLKFYERKEIRDVIAYLRLVV 257

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK---FQHVI 485
           +  D+L+F  ++ +P     +  + KI      E  +++E  +K       K       +
Sbjct: 258 NPNDNLAFERIINTPKRGLGQASLNKIYNYSLEEGCSMFEAARKLEENEKLKSTALLTFV 317

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           K + +    +   S HD    I                  I+ +DE        +     
Sbjct: 318 KQVRKWQEESLNHSLHDLLKKITLESGYISAL-REQDETRIENVDELFRVIQEFDDA--- 373

Query: 546 SLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                   L+      +      N + V +MT+H +KGLE   VFL       F H    
Sbjct: 374 -----TDFLQHVSLLTESDAQINNTDAVNVMTLHASKGLEFEQVFLPGWEDGTFPH---- 424

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL YVG+TRA   L I
Sbjct: 425 ------------------------------ARSLFSTEQIEEERRLAYVGITRAKRFLTI 454

Query: 665 CKHSNT 670
                 
Sbjct: 455 TSAHRR 460


>gi|296104480|ref|YP_003614626.1| exonuclease V subunit beta [Enterobacter cloacae subsp. cloacae ATCC
            13047]
 gi|295058939|gb|ADF63677.1| exonuclease V subunit beta [Enterobacter cloacae subsp. cloacae ATCC
            13047]
          Length = 1180

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 120/871 (13%), Positives = 274/871 (31%), Gaps = 133/871 (15%)

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            +      +  + L        +       K++   L F+D++   +  L   +    +  
Sbjct: 314  ETLLAEPLTLNDLMITRAMAEIREAVSREKRRRGELGFDDMLSRLDAALC-SENGEALAA 372

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
             I       +IDE QDT   Q+ + R +                L  +GD KQ+IY+F G
Sbjct: 373  AIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------QQPNTALLLIGDPKQAIYAFRG 424

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A+    ++ +   +   T          L  ++RS+  ++  V+ +FS  ++A    E  
Sbjct: 425  ADIFTYMKARSEVEAHYT----------LDTNWRSSPGMVESVNALFSRMDSAFMFREIP 474

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
               ++  +              +  + +    P    W    +          +A+  A 
Sbjct: 475  FQPVKFAARNAS----------LRFEFNGVNQPAMNFWLLDGEGCGVTDYQHAMAQHCAA 524

Query: 352  TISNMIGTDTIFSNGKKR-----VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I + +   T       +      ++A DI VLVR R++  LI      L      SV  
Sbjct: 525  QIRDWLSAGTRGEALLWKGNTSAPVKASDITVLVRSRQEAALIRDALTSLNIP---SVYL 581

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
            ++R  + + L  ++++ + + +L+ E + +    L S +   +  DI  +       E  
Sbjct: 582  SNRDSVFETLEAQEMLWVLQAVLAPERESTLRSALASSMLGLNARDIDALNC----DEAA 637

Query: 467  YEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            ++ + +       ++Q   V+  + EL+              +L    G ++        
Sbjct: 638  WDAVVEEFVQYRERWQKRGVMAMLRELMRQRH------IAENMLATAGGERRLTDIL--- 688

Query: 525  VIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                + E L      L +E      L + I++      + +    ++ + V+I+T+H +K
Sbjct: 689  ---HISELLQEAGTQLESEHALVRWLAQQIADPNSNSSSQQMRLESDKHLVQIVTIHKSK 745

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE P+V+L    +     +                       +    +     ++  + 
Sbjct: 746  GLEYPLVWLPFIANYRVQDQAFYHDRESFE-------------AVLDLSKAESSVELAEA 792

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM----------------- 684
                E  RLLYV +TR+     +          +    T + +                 
Sbjct: 793  ERLAEDLRLLYVALTRSVWHCSLGIAPLFRRRGEKAGETDFHLSALGRLIQLGEPKDAAG 852

Query: 685  -VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                          + + +  +   W   E      +   + R       +      ++ 
Sbjct: 853  LRQCIETLCGEHIALHIPSQPDNSRWQLPEQQITDLQARQITRTVADDWRVTSYSGLQQH 912

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
               I  D+     ++ +   +     + +     +  + G  +H L + +    +   + 
Sbjct: 913  GQSIAQDLMPKLDVDAAGTGSVPDEPVLTPHQFPRGASPGTFLHSLFEEL-DFTQPVSEE 971

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINC 857
            ++       +  + A+    L   IT +L  P+      ++   + D   E+     I  
Sbjct: 972  WVLKML--QSGGYDAQWQPVLSEWITAILHAPLTAQGVSLSQLTARDKQVEMEFYLPIAS 1029

Query: 858  PKK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
            P +                            ++ G ID +   +   ++ +YK++     
Sbjct: 1030 PLRAEALDALIREHDPLSAGCPPLNFRQVQGMLKGFIDLVFRHEGRYYLLDYKSNWLGEN 1089

Query: 892  EIEHIPY---------THIAQLSIYEKILKD 913
               +             +  Q  +Y   L  
Sbjct: 1090 SEAYTQQAMASAMQMHRYDLQYQLYTLALHR 1120


>gi|238787258|ref|ZP_04631057.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia frederiksenii ATCC 33641]
 gi|238724520|gb|EEQ16161.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia frederiksenii ATCC 33641]
          Length = 1206

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 128/986 (12%), Positives = 293/986 (29%), Gaps = 148/986 (15%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
             +E+    ++ +                 L        + K++ + +         E ++
Sbjct: 212  EDETILSRHQQIVLQIDAVKEQWRAAAHELEALISGSGVDKRSYSTKHLPNWLGKVEVWA 271

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
              ++         +K   +    K            Q       DR     +    L   
Sbjct: 272  EQATGDYQLPKELEKFRQSVLFEKTKKGAAP-----QHALFSAIDRIYEQPLTLRDLILA 326

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                 +    ++ K++   L F+DL+   +  L++      +   I       +IDE QD
Sbjct: 327  RAISEIRTSVQQEKRQRAELGFDDLLSKLDAALQQPG-GELLAQAIRTRYPVAMIDEFQD 385

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T   Q+ +  +L                L  +GD KQ+IY+F GA+    +R +      
Sbjct: 386  TDPQQYRIFHTLYGG--------QGDCGLLLIGDPKQAIYAFRGADIFTYIRARSEVSAH 437

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
             T          L  ++RS+  ++  V+++FS+ +      +     +            
Sbjct: 438  YT----------LETNWRSSFPMVQSVNRLFSLVKVPFLFEQIPFINVA----------P 477

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TI 362
             +   Q+  +   +  P    W    + +       ++AR+ A  I + +         +
Sbjct: 478  AEKNSQLSFEIKGKKQPAISFWLQPGEGVGVSEYQQLMARQCAAQIRDWLTAGQQGLAQL 537

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
             +    + +QA DI +LVR R +  L+      L      SV  ++R  + D    KDL+
Sbjct: 538  VTAESSKPVQASDITILVRSRAEAALVRDALSAL---AIPSVYLSNRDSVFDTAEAKDLL 594

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L + +L+ E + +    + + +       +  +       +T+ +    +        +
Sbjct: 595  WLLQAVLAPEQERALRSAMATGILGLDAKMLDALNHDERAWDTLVDEFDGYRQHWQR--R 652

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539
             V+  + E++              +L    G ++            L E L      L +
Sbjct: 653  GVLPMLREIMAHRH------LAENLLATPGGERRLTDVL------HLGELLQEAASQLDS 700

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            E      L + I++        +    ++ + V+++T+H +KGLE P+++L   G+    
Sbjct: 701  EHALIRWLAQQIAQPNHQSDNQQLRLESDRHLVQVITIHKSKGLEYPLIWLPFVGNFRQQ 760

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
               +                          +   +     ++    E  RLLYV +TRA 
Sbjct: 761  QDVLYHDRHSFEAL-------------LDLSADEESQALAEEERLAEDLRLLYVALTRAV 807

Query: 660  DQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW---- 709
                     +I        +   +      +V      D +    KL   +         
Sbjct: 808  YHCSVGIAPLIKGGRKKQGDSDMHLSALGYLVQRGQAGDAQYLADKLAELVTLAAGDISV 867

Query: 710  -IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK---------------NDINE 753
                + +    +           +  + Q       +                   ++  
Sbjct: 868  SAVGQLNETPWQPQSEALPALAARQFNRQIQDYWRVTSYSGLQQHGSSKSGLSSVLNVPL 927

Query: 754  PYILNPSTIDTKGKTNL-----ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
              +L     D  G+  +      +  +  +    G  +H LL+ +       ++      
Sbjct: 928  QELLPRLDTDAAGEQAVITDNHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIDQEWLTEQL 987

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKKDI 862
                 + +  +    L   +  +L+ P+      +         +E+     I+   +  
Sbjct: 988  ---QQQGFGEQWSAMLYQWLYDVLQVPLNETGVTLAGLTPQSKQAELQFYLPIDALLQAR 1044

Query: 863  --------------------------IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                                      ++ G ID +   Q   ++ +YK++        + 
Sbjct: 1045 ELDALIKHYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYT 1104

Query: 897  PY---------THIAQLSIYEKILKD 913
                        +  Q  +Y   L  
Sbjct: 1105 AEAMTQAMAEHRYDLQYQLYTLALHR 1130


>gi|254462521|ref|ZP_05075937.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206679110|gb|EDZ43597.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 817

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 107/664 (16%), Positives = 199/664 (29%), Gaps = 143/664 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
              A Y++   +   +DF DL+++   + +  D    +  +  +   +IL+DE QDT++ 
Sbjct: 197 EFYAMYQKRLLELNAVDFGDLLLHVVTIFQTHDD---VLNQYQRWFRYILVDEYQDTNVA 253

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 254 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 297

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V +  E   G                       LW
Sbjct: 298 --GAKVVRLEQNYRSTPHILAAASNVIAGNEGRLGK---------------------DLW 334

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   +    ++     ++D   +       AR I   +  M              I
Sbjct: 335 -------TASEEGEKVRLIGHWDGEEE-------ARWIGEELEAMQSG-----TRGMNPI 375

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + + I+D MA  R + S 
Sbjct: 376 SLNDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRIVTSP 431

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE------YIQKFANCGISKFQHV 484
           +DDL+F  ++ +P     +    KI    R    ++ E        +     G ++   +
Sbjct: 432 DDDLAFERIVNTPKRGLGDKAQQKIQMAARANGVSLVEGARIVVENKAIGGKGGAELAKL 491

Query: 485 IKYIHELIHIA----------------------------QFCSPHDFFTLILGAKKGRQQ 516
           +  +     +                                S  +   +IL        
Sbjct: 492 VDGLDRWAALTRGPRVATIIDDDAVLDDGPQMSEPEFGPPEMSHVELAQVILDESGYTAH 551

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           + +    E    ++ L E +    + E         L   LE     +         +V 
Sbjct: 552 WQNDKTPEGPGRLENLKELVKALEQFEN--------LQGFLEHVSLIMDNTQEDEAAKVS 603

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           IMT+H AKGLE P VFL      +F  +                                
Sbjct: 604 IMTLHGAKGLEFPAVFLPGWEDGLFPSQRS------------------------------ 633

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
             +        EE  RL YVG+TRA D   I   +N     +   +     + +   +  
Sbjct: 634 --MDESGLKGLEEERRLAYVGITRAEDICTISFTANRMVFGQWQSQLPSRFIDELPEDHV 691

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
            V         N          +   +     ++  +      +++  +  +   +   E
Sbjct: 692 EVLTPPGLYGGNYGAAGMGMGGSGQSDLEKRVQDANVYNSPGWKRLQARKDNRPMSQPAE 751

Query: 754 PYIL 757
              +
Sbjct: 752 SKNI 755


>gi|157828499|ref|YP_001494741.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933219|ref|YP_001650008.1| DNA helicase II [Rickettsia rickettsii str. Iowa]
 gi|157800980|gb|ABV76233.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908306|gb|ABY72602.1| DNA helicase II [Rickettsia rickettsii str. Iowa]
          Length = 653

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 110/567 (19%), Positives = 189/567 (33%), Gaps = 121/567 (21%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +  + L    +AK +   Y++    + VLDF DL++  N+L  K    + I     ++
Sbjct: 159 LSVSDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN---SEILRYYQEK 215

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +ILIDE QDT+++Q+   R L   +          + +  VGD+ QSIY + GAE   
Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +LR ++             +II+L  ++RST  IL     V +  +N    +        
Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHSKT-------- 309

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW     + + +       W+   +           AR IA  I  +
Sbjct: 310 -------------LW---TDRENGEKIKIISCWSDKEE-----------ARYIAGEIDKL 342

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +               A +I +LVR    T            +  +           + +
Sbjct: 343 VRE---------NRYNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475
            I+D++A  R  L++ D+L+   ++  P        + KI         + +  I++   
Sbjct: 390 EIRDVLAYIRISLNKNDNLALERIINVPKRAIGAASLNKIRGYALERNISNFAAIKEMLE 449

Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
            G  K       + ++  I          +P +    IL      +        E    I
Sbjct: 450 IGEIKAKSYETLKDLVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584
           + ++E L               ++   +E     ++           V IMT+H AKGLE
Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVFL      VF  +                                           
Sbjct: 562 FDVVFLPGWEEGVFPSQRSLD--------------------------------EDGDKGL 589

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671
           EE  R+ YVG+TRA   L I    +  
Sbjct: 590 EEERRIAYVGITRAKKDLYITHAESRK 616


>gi|295677083|ref|YP_003605607.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295436926|gb|ADG16096.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 795

 Score =  277 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 120/724 (16%), Positives = 214/724 (29%), Gaps = 168/724 (23%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W +     S                ++ +   L            
Sbjct: 38  GAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTNKAAREMMARLSALLPIDTRGMWIGT 97

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F  L +  L             + + T +       L + L         K  Q      
Sbjct: 98  FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 157

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++    K   +T         L   Y++  ++  V+DF +L++   +LL        +R
Sbjct: 158 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 214

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F 
Sbjct: 215 AHYQARFRHILVDEFQDTNKLQYAWLKLLAGQ----------HNAIFAVGDDDQSIYAFR 264

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +   +     R        ++I+L  ++RS   IL   +++ +      G +  
Sbjct: 265 GANVGNMRDFEHEFNVR--------NLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 316

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + ++ S  A  I 
Sbjct: 317 TD---------AGHGEPVRVY--------------------------ESATDSQEAGWIV 341

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +I T           +   +I VL R    +  I         +  I+       
Sbjct: 342 EEIRALINTG----------LSRSEIAVLYRSNAQSRTIEHTL----VNAGIAYRVYGGL 387

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   
Sbjct: 388 RFFERQEVKHALAYLRLIDNPNDDTAFGRVVNFPTRGIGARSIEQLADAARLYNCSMAAA 447

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
           I   A    S        I ++    Q  S  +    ++ A      + + R G E ++ 
Sbjct: 448 IPYVAGKAGSSLAAFANLIGKMRADTQQMSLPETVEYVVRASGLADFYQNEREGQERLEN 507

Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549
           L E +N            L                                         
Sbjct: 508 LQELVNAAAAFVSEEGYGLDTPARSIPLRPGASAAPELAVATDDPNTVVLDAPSIADPAQ 567

Query: 550 -------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                  L   L             A    V++MTVH AKGLE   VF+      +F H+
Sbjct: 568 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 627

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                    ++    EE  RL+YV +TRA ++
Sbjct: 628 NS----------------------------------AMEADGLEEERRLMYVAITRAKER 653

Query: 662 LIIC 665
           L + 
Sbjct: 654 LYLS 657


>gi|24372062|ref|NP_716104.1| DNA-dependent helicase II [Shewanella oneidensis MR-1]
 gi|24345940|gb|AAN53549.1|AE015495_3 DNA helicase II [Shewanella oneidensis MR-1]
          Length = 722

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 98/551 (17%), Positives = 189/551 (34%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     +     +   HIL+DE QDT+ IQ
Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L                +  VGD+ QSIY + GA+ + + R  +          
Sbjct: 230 YAWIRMLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLKDFPT------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L  ++RS  +IL   + + +      G                      +LW 
Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERLGK---------------------ELW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + + +  S    F+ + +       AR I   I++                 
Sbjct: 310 ------TDEADGEPISLYCAFNEMDE-------ARFIVGRINDWYEKGG----------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            ++          +   IKD M   R I ++ 
Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +  T R +  T+++   +       A    S  +  +
Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRTTARQQELTLWQACLRLLDEKVLAGRAASAVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541
             I  L    Q  + +     ++ A   +  + +  G +     + L+E +      E  
Sbjct: 463 DLIVTLQEDTQDMALYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL + L        +    A  + V++MT+H+AKGLE  +VF+      +F  
Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                      +    +E  RL YVGMTRA +
Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 609 KLYITYAESRR 619


>gi|239979932|ref|ZP_04702456.1| ATP-dependent DNA helicase II [Streptomyces albus J1074]
 gi|291451787|ref|ZP_06591177.1| ATP-dependent DNA helicase II [Streptomyces albus J1074]
 gi|291354736|gb|EFE81638.1| ATP-dependent DNA helicase II [Streptomyces albus J1074]
          Length = 840

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 123/767 (16%), Positives = 226/767 (29%), Gaps = 144/767 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      VS  +      +   +  +         +       +  
Sbjct: 131 AAGEMKERVEELVGPRANAMWVSTFHSACVRILRRESKHL-----GFTSSFSIYDAADSK 185

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +    K  +LK +L                   F+ T   
Sbjct: 186 RLMALVCRDLDLDP-KRYPPKSFTAKVSNLKNEL------VDPEDFAAQAADGFEKT--- 235

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   ++   LDF+D+I+ T  LL+       +     +   H+L+DE Q
Sbjct: 236 ---LAQAYTMYQSRLREANALDFDDIIMTTVHLLQ---AFPDVADHYRRRFRHVLVDEYQ 289

Query: 187 DTSLIQWEVIRSL--------------TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           DT+  Q+ ++R L               E      +    P  L  VGD  QSIY+F GA
Sbjct: 290 DTNHAQYSLVRELVGTPADRPVDVPEGAESDHDPLHPAPEPAELCVVGDADQSIYAFRGA 349

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             + +L+ +              + I L  ++RST  ILT  + V    EN +  +    
Sbjct: 350 TIRNILQFEEDYPN--------ATTILLERNYRSTQTILTAANAVIERNENRRPKN---- 397

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW       D+        + +  +           A+ +A  
Sbjct: 398 -----------------LW------TDAGAGAGITGYVADTEHDE--------AQFVAEE 426

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  +               +A DI V  R    + +   +         +          
Sbjct: 427 IDRLTDAG---------DAKAGDIAVFYRTNAQSRVFEEIF----IRVGLPYKVVGGVRF 473

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED---DIFKICTQRHETETVYEY 469
            +   ++D++A  R + + ED +S   +L +P     +     I  +  +   +      
Sbjct: 474 YERKEVRDVLAYLRVLANPEDSVSLRRILNTPKRGIGDRAEAMIDALSQRERVSFPQALR 533

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQF-----CSPHDFFTLILGAKKGRQQFISRFGNE 524
               A    ++  + +K  + L+   +        P      ++       +  +    +
Sbjct: 534 RVDEAYGMAARSANAVKRFNTLMEELRTVVESGAGPATVLEAVMERTGYLAELQASTDPQ 593

Query: 525 ---VIDVLDEFLNFTLRNEQ--NSYSSLQELISELE-----QYPPTIKRAHSANHNEVRI 574
               I+ L E     L  EQ  +       L   LE          I          + +
Sbjct: 594 DETRIENLQELAAVALEFEQDRSEEEGAGTLPEFLEQVALVADSDQIPDEDEDGSGVITL 653

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+HTAKGLE PVVFL      VF H                                  
Sbjct: 654 MTLHTAKGLEFPVVFLTGMEDGVFPHMRALG----------------------------- 684

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                +    EE  RL YVG+TRA ++L + + +  S   + +       + +      +
Sbjct: 685 -----QTKELEEERRLAYVGITRARERLYLTRAAMRSAWGQPSYNPPSRFLEEIPEQHLK 739

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
            K+     +           S     ++    +              
Sbjct: 740 WKRTGSMGAPAAASPRGPAGSVASSLSSSTRAKGAPAFATRRAAEQP 786


>gi|90580937|ref|ZP_01236738.1| putative exodeoxyribonuclease V [Vibrio angustum S14]
 gi|90437815|gb|EAS63005.1| putative exodeoxyribonuclease V [Vibrio angustum S14]
          Length = 1203

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 146/897 (16%), Positives = 287/897 (31%), Gaps = 132/897 (14%)

Query: 101  KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
            +  Q                          ++      +AK     L F+DL+      +
Sbjct: 307  EAPQHAVFVAVADLLDNPATLRDPLLAHAIEHCRILLAQAKAHKGWLSFDDLLTQLGAAI 366

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
               D    +  KI  +    +IDE QDT  +Q+ +  S+  D             LF +G
Sbjct: 367  -DNDQDDLLASKIRSQYPVAMIDEFQDTDPLQYGIFSSVYND--------HPECGLFMIG 417

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D KQ+IY+F GA+    ++ +R  Q   T          L  ++RSTAD++  V+ VF  
Sbjct: 418  DPKQAIYAFRGADIFTYIQARRQVQDHYT----------LGTNWRSTADMIASVNSVFDT 467

Query: 281  PENAQGLSED-STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
            P +     +D +   + H      +      W     Q  +     Q+S       + + 
Sbjct: 468  PNSPFIYDQDITFDPVSHSPKAPDRS-----WWLNGEQQHALTFWLQDSLDGK--PITKG 520

Query: 340  SSASILARRIAYTISNMIG-----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
               S +A   A  I +++               +  +QA DI VLVR  ++  L+     
Sbjct: 521  DYESTMATATAAQIQHILEQSQQGQGYFLDKETQHPVQAGDIAVLVRTGREGKLVRE--- 577

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
             L      SV  ++R  +       D+  L + +L+ +DD +    L S LF+ +  ++ 
Sbjct: 578  ALAKQGIASVYLSNRDSVFSTAEAADVQRLLQAVLTPDDDRALRAALASGLFSLTAIELD 637

Query: 455  KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
             +    +E E      +++    +   + V+  +  ++              +L  + G 
Sbjct: 638  TLNNDENEWEIAVNSFKQYRQQWLK--RGVMPMLRSVMAKNN------IAERLLVEEGGE 689

Query: 515  QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNE 571
            ++            + E L    +   + Y+ L+ L   + +             +  N 
Sbjct: 690  RRLTDLL------HIGELLQEASQTLDSDYALLRWLAENVAEPNGNSDEQILRLESERNL 743

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            V+I+T+H +KGLE  +VF+    S     +   K  +     DD    + I +       
Sbjct: 744  VQIVTIHKSKGLEYDLVFMPFVCSY---REVDSKGEVKYHDEDDNVTILDITK------- 793

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFH 690
             +D I    +    E  RL+YV +TRA     +           K         +     
Sbjct: 794  HADSISKADRERLAEDLRLIYVALTRAVYGCFVGMAPVRNGRSSKEPTGLHKSAMGYLIQ 853

Query: 691  NDER-------------VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL---- 733
            N E               +              AY+W+  + +   L R E  +Q+    
Sbjct: 854  NGEECGVAALELALAKLSEAQPTITIAEPPVLPAYKWAGQNEQTDALNRREFERQIERNW 913

Query: 734  ----------MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-SLLSDNQTFNR 782
                         Q            DI+      P   +T+ +   E S+ +  +    
Sbjct: 914  WMTSYSNLVKQGHQAHHDSSLDLPGFDIDSVQKETPENSETEVELEPEYSIYTFPRGARP 973

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCT----KNAKLWPAKEYKNLLLSITRL-LENP-- 835
            G  +H + + I           +         ++ +L      + L+  +    L+    
Sbjct: 974  GTFLHTVFEEIEFTRPVDSPETVAKLTELLQLEHYELAWLPVLQQLINDVLHCPLDGEQL 1033

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQ 870
             +         +E+     I   +  ++                         + G ID 
Sbjct: 1034 RLAEKTPQQRLTEMEFLLPIEMLQSPLLNKVIAKHDSISAKAGELGFSTVSGMLKGFIDL 1093

Query: 871  ISISQQNIFIFEYKTHHHVPQ----EIEHIPY-----THIAQLSIYEKILKDSYPNK 918
            +   Q   ++ ++K+++          E +        +  Q  IY   L+    ++
Sbjct: 1094 VFEHQGKYYVLDWKSNYLGDDPQVYRGEQLVEAMRDHRYDLQYQIYALALQRFLRSR 1150


>gi|298345243|ref|YP_003717930.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063]
 gi|298235304|gb|ADI66436.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063]
          Length = 877

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 201/707 (28%), Gaps = 144/707 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L   ++                 + ++ ++L   +        
Sbjct: 85  GAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLVGNAAKYMWVST 144

Query: 66  FSLLSSFFL---------TQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F       L         T+ F+      T+ +  +    +         K    +  + 
Sbjct: 145 FHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIKGRGLDPKRFPPKSFAAKISQA 204

Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++   T ++F           L   +   Y++  ++    DF+DLI +T  L K      
Sbjct: 205 KNELITPEVFALGAGVDKMSQLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPD-- 262

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I  +   +  H+L+DE QDT+  Q+E+IR LT            P  L  VGD  QSIY
Sbjct: 263 -ILARYRAKFRHVLVDEYQDTNPAQYELIRLLT---VGATGDAQPPAELTVVGDSDQSIY 318

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA  + +   +              + + L  ++RST  IL+V + + S  E  +  
Sbjct: 319 AFRGATIRNIEEFESDFP--------GATTVYLEQNYRSTGTILSVANAIISENEGRRKK 370

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +  +      ++                                    L    +    A 
Sbjct: 371 NLWTDAGQGMQAV-----------------------------------LYAADTDRDEAA 395

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   +  +    +             +  V  R    +  +  +         I     
Sbjct: 396 FIVRELQKLRQEGS----------SWDEFAVFYRTNAQSRSLEEML----TREGIPYRVV 441

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC---------- 457
                 D   IKD +A      +  DD + + +L  P     +  +  I           
Sbjct: 442 GGTKFYDRREIKDAIAYLCAAANPADDGNLLRVLNEPKRGLGDKAVQTIREVSLSENLDF 501

Query: 458 -TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQ 515
                +      +    +    +     +  +  +  + A      +     L       
Sbjct: 502 GQALRQFLPGGTHHGDLSAKASAGITEFVGVLDAMRALDAAGAPLDEILDTALEDSGYLP 561

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSAN--- 568
           +       +    ++ L E  N       +   + L + +  +       +   +A    
Sbjct: 562 KLRKSNDPQDDARVENLAELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAGQPE 621

Query: 569 ----------HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                       EV +MTVHTAKGLE   VF+      +F H    +             
Sbjct: 622 RPADPVHPAAPPEVTLMTVHTAKGLEFNTVFVTGMEDGLFPHSRSLESP----------- 670

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                      E  RL YV +TRA  +L + 
Sbjct: 671 -----------------------QDIAEERRLAYVAVTRARQRLYLT 694


>gi|188026352|ref|ZP_02961779.2| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827]
 gi|188020076|gb|EDU58116.1| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827]
          Length = 723

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 103/551 (18%), Positives = 184/551 (33%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+EA  +  ++DF +L++  ++L   +     +     +   +IL+DE QDT+ IQ
Sbjct: 176 VYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---VLQHYRERFTNILVDEFQDTNSIQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L  D             +  VGD+ QSIY + GA+ + + R             
Sbjct: 233 YAWIRVLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL   + + +   +  G +                     LW 
Sbjct: 276 -GAETIRLEQNYRSTNNILKAANALIAHNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +  S    F+ L +       AR I   I                   
Sbjct: 313 ------TEGGDGEPISLYCAFNELDE-------ARYIVSRIKQWQENGGAL--------- 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +D  +L R    + ++            +           +   IKD ++  R I ++ 
Sbjct: 351 -QDCAMLYRSNAQSRVLEEAL----IQSAMPYRIYGGQRFFERQEIKDALSYLRLIANRN 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVI 485
           DD SF  ++ +P     E  +  +    R +  T++E  +             +  +  +
Sbjct: 406 DDASFERVVNTPTRGIGERTLDTVRQTARDQQLTLWESCEYLLREQVLGGRAAAAIERFL 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-Q 541
           + +  L    Q    H     ++     R  +    G +     + L+E +N T     Q
Sbjct: 466 ELVDALAKETQEMPLHVQTDRVINDSGLRAMYEQEKGEKAQARIENLEELVNATRDFSYQ 525

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    L  L + L              + + V++MT+H+AKGLE P VF+V     +F  
Sbjct: 526 DEDQDLMPLQAFLSHAALESGDGQADIHQDAVQLMTLHSAKGLEFPNVFIVGMEEGMFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                           EE  RL YVG+TRA  
Sbjct: 586 QMSMDESG----------------------------------RLEEERRLAYVGITRAMQ 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTITYAESRR 622


>gi|82778196|ref|YP_404545.1| exonuclease V subunit beta [Shigella dysenteriae Sd197]
 gi|81242344|gb|ABB63054.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella dysenteriae
            Sd197]
          Length = 1180

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 967  PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|78186341|ref|YP_374384.1| DNA helicase II [Chlorobium luteolum DSM 273]
 gi|78166243|gb|ABB23341.1| ATP-dependent DNA helicase PcrA [Chlorobium luteolum DSM 273]
          Length = 735

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 106/552 (19%), Positives = 185/552 (33%), Gaps = 118/552 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y    ++N  LDF+DL+I   +L ++      + +++ +   +ILIDE QDT+
Sbjct: 170 AALVYELYTRKLRENNALDFDDLLIKPLELFREHPD---VLHELQELFRYILIDEYQDTN 226

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ V + L E            R +F VGD+ QSIYS+ GA+   +L  +   ++   
Sbjct: 227 RAQYLVTKQLAE----------RYRNIFVVGDDAQSIYSWRGADISNILNFQDDYRES-- 274

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                    +L  ++RSTA ILT  + V S                              
Sbjct: 275 ------ETFKLVDNYRSTATILTAANSVISRNSRQIKK---------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
             E V            E++                A ++   I +M            +
Sbjct: 307 --ELVPQGAKGDPLTLIEAYN-----------ERNEAEKVGERILSMHRE---------K 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            ++ +   V  R    + ++    R      +I               IKD +A  RFI 
Sbjct: 345 GLEFRSFAVFYRTNAQSRVLEDAMR----QSRIPYKIFGSVSFYKRREIKDAVAYLRFIQ 400

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKFQH 483
           +  D  S + ++  P     +  I K+         T+YE I+      F    ++    
Sbjct: 401 NDRDSESLLRIINFPPRKIGDVSITKLRQFAEERGLTLYEAIRSAGEGGFPQRLLTALGS 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               I +L   A   + +D    +           +    E     + L E L+      
Sbjct: 461 FSAVIEKLRETAVDGTVYDVLHELFELTAIPSLLQAENTPESLARHENLQELLSMARDFS 520

Query: 541 QNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++    SL + +  +             + N V +MTVH +KGLE PVVF+     ++F
Sbjct: 521 DHNPDRGSLGDFLENIALASD--YDETQESDNFVSLMTVHASKGLEFPVVFITGLEERLF 578

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                +   +    EE  RL YV +TRA
Sbjct: 579 P------------------------------------LNCFEPEQLEEERRLFYVAVTRA 602

Query: 659 SDQLIICKHSNT 670
            +++ +    + 
Sbjct: 603 REKIFLSWAQSR 614


>gi|242242257|ref|ZP_04796702.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           W23144]
 gi|242234273|gb|EES36585.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis
           W23144]
          Length = 1218

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 112/600 (18%), Positives = 211/600 (35%), Gaps = 47/600 (7%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            K   L  K+K           + +  ++         + + +   +   K+   +LDF 
Sbjct: 307 DKYKSLVMKVKNDYFSRNADDLKRDMQQLAPRVAYLAQIVQDVIHSFGVQKRSRNILDFS 366

Query: 151 DLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           D       +L   D   + I     +    IL+DE QDT+ +Q +++  +       K  
Sbjct: 367 DYEHFALCILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCI-------KTG 419

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 LF VGD KQSIY F  A+P   + +        T++G     I+L  +FRS  +
Sbjct: 420 EEHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGTDSGL---RIDLSQNFRSRQE 476

Query: 270 ILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           +L+  + +F     E    +S D    +   +        VQL   V +  ++       
Sbjct: 477 VLSTTNYLFKHMMDEQVGEISYDDAAQLYFGAPYDKVSHPVQLRALVEASSEN------- 529

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKD 385
                       + +   A  I   + ++I    ++    G+ R    KDI++L R    
Sbjct: 530 ---------SDLTGSEQEANYIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQ 580

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                   +    +  I    N +    +   ++ +++  R I +   D+  V +++S +
Sbjct: 581 ARN----LQQAFKNNDIPFHVNSKEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVI 636

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
           + F+E+++ KI       +  Y+ I+ +            K    I+ I +  + +Q   
Sbjct: 637 YQFTEEELAKIRVVSPHDDYFYQSIKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQP 696

Query: 500 PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
            +             Q F    G +     L    N  +  E +S+  L + I  +++  
Sbjct: 697 VYQLIDKFYNDHFVIQYFSGLIGGKGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELI 756

Query: 559 PTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              K     N      N VR+MT+H++KGLE P V       +         + +     
Sbjct: 757 DRKKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYG 816

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                          +          +K    E  RL+YV +TRA +QLI+         
Sbjct: 817 LGMDYFDVNKDMAFPSLASVAYRAINEKELISEEMRLVYVALTRAKEQLILVGRVKDEKS 876


>gi|319427815|gb|ADV55889.1| DNA helicase II [Shewanella putrefaciens 200]
          Length = 722

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 98/551 (17%), Positives = 188/551 (34%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     +     +   HIL+DE QDT+ IQ
Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L                +  VGD+ QSIY + GA+ + + R  +          
Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLQDFPT------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L  ++RS  +IL   + + +      G                      +LW 
Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + +    S    F+ + +       AR I   I++                 
Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            ++          +   IKD M   R I ++ 
Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +  T R +  T+++   +       A    S  +  +
Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRTTARQQDLTLWQACLRLLDEKVLAGRAASAVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541
             I  L    Q  + +     ++ A   +  + +  G +     + L+E +      E  
Sbjct: 463 DLIVTLQEDTQDMALYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL + L        +    A  + V++MT+H+AKGLE  +VF+      +F  
Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                      +    +E  RL YVGMTRA +
Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 609 KLYITYAESRR 619


>gi|16125775|ref|NP_420339.1| DNA helicase II [Caulobacter crescentus CB15]
 gi|13422909|gb|AAK23507.1| DNA helicase II [Caulobacter crescentus CB15]
          Length = 805

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 102/604 (16%), Positives = 182/604 (30%), Gaps = 120/604 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y+E  +     DF DL+++   L         +  +  Q   ++++DE QDT++ Q
Sbjct: 209 LYRQYQERLRILNACDFGDLLLHNISLFTGHPD---VLDEFQQRFKYVMVDEYQDTNVAQ 265

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R L +            + +  VGD+ QSIY + GAE   +LR +R          
Sbjct: 266 YLWLRLLAQ----------GRQNVCCVGDDDQSIYGWRGAEVDNILRFERDFP------- 308

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RST  IL     + +  +   G +                     LW 
Sbjct: 309 -GAKVVRLECNYRSTEHILAAASGLITANKGRLGKT---------------------LW- 345

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       ++   +  +D   +        R IA  I                  +
Sbjct: 346 ------TPSKGGEKVKVSGVWDGEAES-------RLIADEIERAKKAGR----------K 382

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              + +LVR              L+    I           +   I+D  A  R I S +
Sbjct: 383 YSQMAILVRASFQMRAFEERFVLLQ----IPYKVVGGPRFFERAEIRDAHAYLRLIQSPD 438

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DDL+F  ++ +P     +  + K+    R    +  E  +      +      +   + I
Sbjct: 439 DDLAFERIVNTPKRGIGDTSVQKLLQIARLGGISTVEAARQIITSDELPARTRTALSNFI 498

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN 542
           + +     +            +L             G      ++ L E +      +  
Sbjct: 499 RDLDRWRSLVGTAHHQRLLETVLEESGYTDALRLDKGPTSQTRLENLKELVQSMGAFDT- 557

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                  L + LE     +     A  + V IMT+H+AKGLE P+VFL      VF  + 
Sbjct: 558 -------LEAYLEHVSLVMDLDREATGDAVWIMTLHSAKGLEFPLVFLPGWEEGVFPSQR 610

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                            +    +   EE  RL YVG+TRA ++ 
Sbjct: 611 S--------------------------------MDDKGEKGLEEERRLAYVGITRAREEA 638

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            I   +N     +   +     V +                               P  +
Sbjct: 639 RISFVANRQVYGRWTSQLPSRFVDELPIAHVDAASETGYYGGGPGMQSTAASRWDDPGTS 698

Query: 723 PLER 726
             + 
Sbjct: 699 AFQA 702


>gi|77164123|ref|YP_342648.1| DNA-dependent helicase II [Nitrosococcus oceani ATCC 19707]
 gi|254435365|ref|ZP_05048872.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
 gi|76882437|gb|ABA57118.1| ATP-dependent DNA helicase UvrD [Nitrosococcus oceani ATCC 19707]
 gi|207088476|gb|EDZ65748.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27]
          Length = 717

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/736 (15%), Positives = 224/736 (30%), Gaps = 134/736 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    ++ +N             +  + + L +          
Sbjct: 30  GAGSGKTRVLVHRMAWLIRSQGIAPVNLLAVTFTNKAAGEMRGRIEELLETPVGGMWVGT 89

Query: 66  FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  ++   L    Q+    ++    +   +   ++  L+    +  +   R         
Sbjct: 90  FHGIAHRLLRAHWQEAQLPQDFQILDSEDQYRLIRRILQNLNLDESRWPPRQAQWFINSH 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    + + T   +     +   Y+   +++ ++DF +L++  ++LL+     A +
Sbjct: 150 KDKGLRPQHLEEGTNPHVRQQIRIYHDYQSHCERSGLVDFAELLLRAHELLRDH---AHV 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    H+L+DE QDT+ IQ+  +R L                LF VGD+ QSIY +
Sbjct: 207 LQHYQNRFTHVLVDEFQDTNAIQYAWLRLLAGH----------QGELFIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +  R               + L  ++RST  IL   + V +      G + 
Sbjct: 257 RGAQIENIQQLSRDFPA--------IRTLRLEQNYRSTGVILAAANAVIANNTERLGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW           + +       F+   +       A  I
Sbjct: 308 --------------------LW-------TESEDGEPIQIYQAFNERDE-------AHFI 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I        +            D  VL R    + ++            I    +  
Sbjct: 334 TERIHAWKAQGGMG----------ADTAVLYRSNAQSRIVEAALVE----AGIPYRVHGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IKD +A  R +  Q DD +F  ++ +P     E  + ++    R    ++++
Sbjct: 380 LRFFERAEIKDALAYLRLVTHQNDDSAFERIVNTPPRGIGERTLSQVREHARQAGVSLWQ 439

Query: 469 ------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                   Q       +  +H    +  +       S       +L        +    G
Sbjct: 440 ATVQLVAQQHLPGRSATALRHFHSLMERMATDIMGLSLPAQIESVLDHSGLLNHYRKDRG 499

Query: 523 N---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
                 +D L E +N   +  +    SL+ L   L                + V++MT+H
Sbjct: 500 EKSQSRLDNLKELINAASQF-KPEDPSLETLSEFLAHAALESGGTQAEGWEDCVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGLE P+VF++     +F     +                                  
Sbjct: 559 AAKGLEFPLVFMIGMEEGLFPSPQSRNEPG------------------------------ 588

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                 EE  RL YVGMTRA   L +               Q + +     +    E+  
Sbjct: 589 ----RLEEERRLCYVGMTRAQRHLYLIYATRRWLYGSDSYPQPSRFLHEIPTELTSEQQP 644

Query: 697 KIKLTNSINKDEWIAY 712
            I + +     +  A 
Sbjct: 645 HIDIIHPGGAPQPTAP 660


>gi|58698849|ref|ZP_00373722.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534628|gb|EAL58754.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 450

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 151/476 (31%), Positives = 246/476 (51%), Gaps = 28/476 (5%)

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
           +     +I T+ I +K  D ++ ++  Q+         N+Y++FK T + L + K     
Sbjct: 3   EKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQIFKRTSSLLGVFKVYVDL 62

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y   K KN +LD+ D+I    +LL   D   W+ + +DQ+I+HIL+DE QD S+ QW++I
Sbjct: 63  YNSEKSKNALLDYNDIIDLATNLLSDPDHKDWVLFNLDQKIDHILVDEAQDNSISQWKII 122

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            +L ++FF G   +   RTLF VGD KQSIY F GA P      ++    +    G+ + 
Sbjct: 123 TNLCDEFFAG---NDEKRTLFVVGDVKQSIYRFQGANPHLFNYMQQYFHTKTG--GRDWI 177

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
             +L  SFRST ++L +VD++F+     +     +   I+H   R    G +++W  +  
Sbjct: 178 SCQLEKSFRSTPEVLMLVDRIFNN---FRAEISFNDNEIKHVPHRENDQGYIEIWPALPR 234

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
           + + +    Q   T          +  +LA+ IA  I N +    I    K R I+ +DI
Sbjct: 235 RKEKEQRALQIPLTC---KEGYTIADRLLAQTIANRIHNWLNEGRIL-VAKDRHIEPRDI 290

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
           ++LVR      ++            + VVG D F + D++A++DL+AL  F+L Q +DL+
Sbjct: 291 MILVR---QRNVLVDYIISELKKANVPVVGRDYFRIMDYIAVQDLIALAEFLLLQANDLA 347

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
               LKSPLFNF+EDD+F I   R E  +++E IQ ++    S+       ++ LI++++
Sbjct: 348 LANALKSPLFNFTEDDLFNIAYDRKEH-SLWERIQDYSVVIYSE-------LNYLINLSR 399

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
             SP   FT IL    G+++F +R G E  +VLDEF+N  L+ E     SLQ  + 
Sbjct: 400 TESPLALFTHILRT--GKKKFAARLGLECFEVLDEFMNLVLQFEN---PSLQAFVQ 450


>gi|269137484|ref|YP_003294184.1| DNA-dependent helicase II [Edwardsiella tarda EIB202]
 gi|267983144|gb|ACY82973.1| DNA-dependent helicase II [Edwardsiella tarda EIB202]
 gi|304557557|gb|ADM40221.1| ATP-dependent DNA helicase UvrD/PcrA [Edwardsiella tarda FL6-60]
          Length = 719

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/693 (16%), Positives = 213/693 (30%), Gaps = 131/693 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLAVENCSPFSIMAVTFTNKAAAEMRHRIEALIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    +   +   LK  +K    +  +   R         
Sbjct: 90  FHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +             +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 150 KDDGLRPQHIESYGNPVEQTWLRIYQAYQEACDRAGLVDFAELLLRAHELWLHKP---QI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                   N+IL+DE QDT+ IQ+  IR L  D             +  VGD+ QSIY +
Sbjct: 207 LEHYRARFNNILVDEFQDTNRIQYAWIRMLAGD----------SGRVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                  I L  ++RS+ +IL   + +    +   G   
Sbjct: 257 RGAQVENIQKFLDDFP--------GAQTIRLEQNYRSSGNILRAANALIENNDGRLGKK- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +       AR +
Sbjct: 308 --------------------LW-------TEDGEGEPISLYCAFNELDE-------ARFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                    K+  +L R    + ++                    
Sbjct: 334 VNRIKAWQDNGGAL----------KECAILYRSNAQSRVLEEAL----LQAATPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD +A  R + ++ DD +F  ++ +P+    +  +  +    R    T+++
Sbjct: 380 MRFFERQEIKDALAYLRLLSNRNDDAAFERVVNTPVRGIGDRTLDVVRQTARDRQLTLWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +             +  +  ++ I  L   +     H     ++     RQ +    G
Sbjct: 440 ATRALLQEQVFPGRAANALRRFLELIEALAQDSDDLPLHVQTDRVIRDSGLRQMYEQEKG 499

Query: 523 N---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
                 I+ L+E +  T +        L  L + L        +    A  + V++MT+H
Sbjct: 500 EKGQTRIENLEELVTATRQFSYEDDDDLSPLQAFLSHAALESGEGQADAYQDAVQLMTLH 559

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P VF+V     +F  +                                     
Sbjct: 560 SAKGLEFPQVFIVGMEEGMFPSQMSLDEGG------------------------------ 589

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                 EE  RL YVG+TRA  +L +    +  
Sbjct: 590 ----RLEEERRLAYVGVTRAMRKLTLTYAESRR 618


>gi|157148363|ref|YP_001455682.1| exonuclease V subunit beta [Citrobacter koseri ATCC BAA-895]
 gi|157085568|gb|ABV15246.1| hypothetical protein CKO_04185 [Citrobacter koseri ATCC BAA-895]
          Length = 1181

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/876 (13%), Positives = 262/876 (29%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       +      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIEELLAEPLTIKDLLITRALAEIRETVAQEKQRRGELGFDDMLSRLDVALRSN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                 +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 366  S-GDALASAIRGRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+ +FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNTLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +    + +  P    W    +S       S
Sbjct: 467  AFMFREIPFAPVKSAQKNQS----------LRFVLNGETQPAMNMWLMEGESCGIGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++   I      L  
Sbjct: 517  YMAQVCATQIRDWLKAGQTGDALLVSEKTSRPVRASDISVLVRSRQEAAQIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    + + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWILQAVMTPERENTLRSAMAASMMGLTAQDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLSQHILEPDSNAASQQLRLESDKHLVK 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                       +    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------NSFDAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + ++  +     E  RLLYV +TR+     +          +   +   +Q     ++  
Sbjct: 785  ESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS-- 745
                D    +  +     +D                 E           +++P   +   
Sbjct: 845  GEPKDAAGLRACIDALCGEDITCRTPAEPDSERWQVTEASRAALSARALRRMPADNWRVT 904

Query: 746  ----------PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                       +  D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQQGHSVAQDLIPRLDVDAAGVGDVVEEPELTPHQFPRGASPGTFLHSLFEDLDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVS 852
                                         L ++ +         +    + +   E++  
Sbjct: 965  TQPVDPAWVREKLELGGYDAHWEPVLTQWLDAVLQAPLTERGVSLRHLSAREKQVEMAFY 1024

Query: 853  GKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKTH 886
              I  P                              ++ G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLIASQLDALIRRFDPLSAGCPPLDFMQVRGMLKGFIDLVFRHEGRYYLLDYKSN 1084

Query: 887  HHVPQEIEHIPY---------THIAQLSIYEKILKD 913
                    +             +  Q  +Y   L  
Sbjct: 1085 WLGEDSTAYTQEAMASAMQAHRYDLQYQLYTLALHR 1120


>gi|298489453|ref|ZP_07007464.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156027|gb|EFH97136.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 727

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 118/661 (17%), Positives = 214/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L         H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE   VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFAHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|157827215|ref|YP_001496279.1| DNA helicase II [Rickettsia bellii OSU 85-389]
 gi|157802519|gb|ABV79242.1| DNA helicase II [Rickettsia bellii OSU 85-389]
          Length = 653

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 113/561 (20%), Positives = 192/561 (34%), Gaps = 121/561 (21%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            L    +AK +   Y++    + V+DF DL++  N+L  K      I     +   +ILI
Sbjct: 165 NLPLQRVAKLVYEEYQQNLLISNVVDFGDLLLYNNELFIKNPD---ILKHYQERYRYILI 221

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+++Q+   R L           S  + +  VGD+ QSIY + GAE   +LR ++
Sbjct: 222 DEYQDTNVVQYLWARMLA----------SLSKNICCVGDDDQSIYGWRGAEVGNILRFEK 271

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                        +II+L  ++RST  IL     V +  +N  G +              
Sbjct: 272 DF--------LNATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------------- 309

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  LW       D +   + +  + + D           AR IA  I+ ++     
Sbjct: 310 -------LW------TDKESGEKIKIISCWNDKEE--------ARYIAAEIAILVREGR- 347

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                     A +I +LVR    T            +  +           + + I+D++
Sbjct: 348 --------YSAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERMEIRDVL 395

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK- 480
           A  R  L+Q D+L+   ++  P        + KI      +  + +  I++    G  K 
Sbjct: 396 AYIRIALNQNDNLALERIINVPKRAIGAVTLNKIKLYAIEKNISNFAAIKEMLEDGEIKT 455

Query: 481 -----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
                 + ++  I        F +P +    IL      +        E    I+ ++E 
Sbjct: 456 KSYETLKDLVTKISNWHERFSFDAPINVTKAILDDSGYLEMLQEEKTEEALGRIENINEM 515

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLESPVVFL 590
           L               ++   +E     ++           V IMT+H AKGLE  VVFL
Sbjct: 516 LRAIAEF--------NDIHDFIEHSSLVMENESLETSYGGSVTIMTLHGAKGLEFDVVFL 567

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 VF  +          L ++                                 R+
Sbjct: 568 PGWEEGVFPSQRSLDEEGEKGLEEE--------------------------------RRI 595

Query: 651 LYVGMTRASDQLIICKHSNTS 671
            YVG+TRA  +L I    +  
Sbjct: 596 AYVGITRAKKELYITHAESRK 616


>gi|229821506|ref|YP_002883032.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333]
 gi|229567419|gb|ACQ81270.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333]
          Length = 829

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 120/805 (14%), Positives = 219/805 (27%), Gaps = 137/805 (17%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P      VS  +      +   +         L+ +       +  
Sbjct: 118 AAAEMRERVEALVGPPARAMWVSTFHSACVRILRREHA-----VLGLRSSFSIYDAADSL 172

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +    +  DLK +L           D          +   
Sbjct: 173 RLMTLVCRELGLDP-KRYPPKAFIHRVSDLKNEL----------VDPDAFAAGVGGSNPY 221

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y +  ++   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 222 EENLAEAYRMYAQRLRQANALDFDDLIMTTVNLLQAFPA---VAEHYRRRFRHVLVDEYQ 278

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS-----------PRTLFAVGDEKQSIYSFHGAEPK 235
           DT+  Q+ ++R L        +               P  L  VGD  QSIY+F GA  +
Sbjct: 279 DTNHAQYVLVRELAGVATQAYDDGGDSDLDRGPAPVLPAELTVVGDADQSIYAFRGATIR 338

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +L  +              + I L  ++RST +IL+  + V +   + +  +  +    
Sbjct: 339 NILEFEADYP--------DATTILLEQNYRSTQNILSAANAVIARNPDRKAKNLWTA--- 387

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                                   +   P+   + +  D           AR +A  I  
Sbjct: 388 ------------------------AGAGPKIIGYVADSDHEE--------ARFVAEEIDR 415

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           +         G    ++  D+ V  R    +  +  +         I           + 
Sbjct: 416 L---------GDASGVRPGDVAVFYRTNAQSRALEEVL----IRAGIPYKVVGGTRFYER 462

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK--- 472
             +KD +A  R I + +D ++   +L  P     E     I          +    +   
Sbjct: 463 REVKDAIAYLRAIANPDDAVNVRRILNVPKRGLGERSEAVIAAYAERERISFGAALEAAA 522

Query: 473 ----FANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524
                A   +       + + +L  + A   +P +     L       +  +    +   
Sbjct: 523 DVPGLATRALGIVTEFARLLADLRAMAAGGATPAEVLDSALDRSGYLAELRASDDPQDAT 582

Query: 525 VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKG 582
            ++ L E         +      L + +  +             A+   V +MTVHTAKG
Sbjct: 583 RVENLAELHAVAAEFSEADPDGDLGDFLERVALVADTDQLPDDDASGGVVTLMTVHTAKG 642

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVF+       F H                                         +
Sbjct: 643 LEFPVVFVTGLEDGTFPH----------------------------------ARSLADPA 668

Query: 643 TQEEYNRLLYVGMTRASDQLIIC--KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
              E  RL YV +TRA ++L I                 + +         D R  +  +
Sbjct: 669 ELSEERRLAYVALTRARERLYISRAAVRTAFGVPHELPASRFLDDIPDELLDWRRAESSM 728

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                                T      T                     ++    +   
Sbjct: 729 QQLRGSWGSGGVGSGRVRSGATGGTGPRTAPSQATGATFGSATPRADVPSLDVGDRVTHD 788

Query: 761 TIDTKGKTNLESLLSDNQT-FNRGL 784
                    LE   S      + G 
Sbjct: 789 AYGLGTVVALEGAGSSQVAKIDFGT 813


>gi|114707166|ref|ZP_01440064.1| DNA helicase II [Fulvimarina pelagi HTCC2506]
 gi|114537362|gb|EAU40488.1| DNA helicase II [Fulvimarina pelagi HTCC2506]
          Length = 849

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/675 (17%), Positives = 205/675 (30%), Gaps = 114/675 (16%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
           + A     + L A Y+E  +     DF DL+++   + +       +     +   +IL+
Sbjct: 192 SRAFAGKGRDLYAAYQERLRTLNACDFGDLLMHPIAIFRAHPD---VLADYHRRFRYILV 248

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q+  +R L +    GK+   +P  +  VGD+ QSIY + GAE   +LR  +
Sbjct: 249 DEYQDTNTAQYLWLRLLAQ--RPGKDNEQAPVNICCVGDDDQSIYGWRGAEVDNILRFDK 306

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                        ++I L  ++RST  IL     +    E+  G +  +           
Sbjct: 307 EFST--------ATVIRLERNYRSTGHILGAASHLIGHNEDRLGKTLFTDHPDP------ 352

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                                            +     +   AR I   I ++   +  
Sbjct: 353 ---------------------------EDPKVEVNAGWDSEEEARAIGEAIEDLQRRE-- 383

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                       D+ +LVR              +     ++          + + I+D +
Sbjct: 384 -------NHNLNDMAILVRASFQMRTFEDRFVTM----GLNYRVIGGPRFYERMEIRDTL 432

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFAN 475
           A  R +    DDL+F  ++ +P     +  I  +    R     +          ++   
Sbjct: 433 AYFRCVCQPADDLAFERIVNTPKRGLGDATIRLLHEYARERQIPLIPAALEIVETEELKP 492

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +  + V+  +     +       +    IL      + + +    E    ++ L E 
Sbjct: 493 KPRNALRRVVLDMKRWSELLPSTKHTELAEQILEESGYTEMWQNDRSAEAPGRLENLKEL 552

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           +      E         L S LE     +    +A  + V IMT+H+AKGLE   VFL  
Sbjct: 553 IRSMEEYES--------LPSFLEHVALVMDTEQNAEMDAVSIMTLHSAKGLEFDTVFLPG 604

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F H+                                  +    +S  EE  RL Y
Sbjct: 605 WEEGLFPHQR--------------------------------ALDEGGRSGLEEERRLAY 632

Query: 653 VGMTRASDQLIICKHSNTS----NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           VG+TRA  +  I   SN       +     R   ++        E         +     
Sbjct: 633 VGITRAKRRAKIWFVSNRRIHGLWQSTIPSRFLDELPDAHVDVMEANTSYGGYGAGGFGG 692

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           + A  W      N    R    K+    +               E    +  T    G+ 
Sbjct: 693 YGASRWDGAAAFNEGAYRTPGWKRAQAAKASQGGGDGWSGGRTREITYESDQTSGFSGRF 752

Query: 769 NLESLLSDNQTFNRG 783
             +         +RG
Sbjct: 753 TAD-GAERQGRASRG 766


>gi|255067137|ref|ZP_05318992.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256]
 gi|255048505|gb|EET43969.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256]
          Length = 666

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 204/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE L K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 126 KEALFKAQHQISLWKNDLKTPEDMLQTTSNAWEEQIARVYASYQETLQSYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV             S              G  ++ + V  Q++               
Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 317

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                      A  +   I    ++G D           Q  D  VL R      +    
Sbjct: 318 --------QHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      ++    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 361 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +   
Sbjct: 417 LGKLNTYAHEHECSLYEAAQNEEALALLNNTNRQHLQAFMDMFGSYRAKAETSEAGELIN 476

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + +   +  R  +    ++ EL   +       
Sbjct: 477 SLLKEIDYENHLLASEEGKAGEIKWRNVSDLTGWLERKGEQDGKNIIELAQTVALMTLLE 536

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V++ T+H +KGLE P VFLV     +  H                     
Sbjct: 537 GK-SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 575

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 620

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 621 SRFIDEMPQED 631


>gi|253995787|ref|YP_003047851.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
 gi|253982466|gb|ACT47324.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
          Length = 736

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 204/633 (32%), Gaps = 125/633 (19%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   +   F +L              ++  +  K  P      K+ Q+     +D
Sbjct: 103 LRAHHREAGLPASFQILDIADQLSMIKRLMKLMNVDDEKFPP------KQVQNYINGCKD 156

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                    +        + +   Y++  +++ V DF +L++   +LL++      IR  
Sbjct: 157 EGLRAHAVDAYDPHSQKLREIFEEYDKQCQRDGVADFAELLLRCYELLERD---TNIRQH 213

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 +IL+DE QDT+ +Q++ ++ L                +FAVGD+ QSIY F GA
Sbjct: 214 YQSRFRYILVDEFQDTNRLQYQWLKLLAG----------KDNCMFAVGDDDQSIYGFRGA 263

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +     +        SI++L  ++RS ++IL   + + S  +N  G +    
Sbjct: 264 RVGNMRDFETDFNVQ--------SIVKLEENYRSHSNILDAANAIISHNKNRLGKNL--- 312

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                  +  G    V++++      +                          A+ I   
Sbjct: 313 ------WTSAGAGEPVRVYQAYNDNDE--------------------------AQFIVDE 340

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  +    T          +  ++ +L R    + ++            +          
Sbjct: 341 IKMLHAEGT----------ELGEMAMLYRSNAQSRVLEHAL----FSANLPYRVYGGLRF 386

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY-- 469
            +   IK  +A  R I +  DD + + ++  P        + ++    R    ++++   
Sbjct: 387 FERAEIKHALAYMRLIANANDDTALLRVINFPARGIGARSLEQLQEAARAGNCSLWQAAI 446

Query: 470 -IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVID 527
                   G       +  I +++  A   S  +   L       +  + +   G + I 
Sbjct: 447 NKVGNGKVGGKGIDGFVALIRQMVDEAYGISLAELAELATTLSGLKAHYQNEKEGEDRIA 506

Query: 528 VLDEFLNFTLRNEQNSYSSLQE---------LISELEQYPPTI-KRAHSANHNEVRIMTV 577
            L+E +   +      + +            L   L        +         +++MTV
Sbjct: 507 NLEELVTAAVAFTNQDFGNHSNADGETEQDLLTQFLSHASLEAGEHQADVGREALQLMTV 566

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE  VVF+      +  H+                                    
Sbjct: 567 HASKGLEFKVVFISGLEEGLCPHEQST--------------------------------- 593

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             + +  EE  RL+YV +TRA  +L +    + 
Sbjct: 594 -YEANGLEEERRLMYVAVTRARQRLYLSHAQSR 625


>gi|254304235|ref|ZP_04971593.1| superfamily I ATP-dependent helicase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148324427|gb|EDK89677.1| superfamily I ATP-dependent helicase [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 737

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/546 (19%), Positives = 181/546 (33%), Gaps = 117/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +A  ++  +DF D+++NT  LL+K +    I  K+  +  +I+IDE QDT+ +
Sbjct: 169 EVYDKYNKALLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 224

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +          
Sbjct: 225 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYNN----- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I++L  ++RST  IL   +++    ++++                        LW
Sbjct: 270 ---AKIVKLEENYRSTTTILDAANELIKNNKSSKDKK---------------------LW 305

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              +  +   + S       RI   I                 +
Sbjct: 306 -------TQNGKGDLIKVLACDNGRDEVS-------RIIEFIRENHQNG----------V 341

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D+ +L R    + +           Y I               IKD++A    I++ 
Sbjct: 342 PYRDMTILYRTNAQSRIFEEGL----LRYNIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 397

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484
           +D+L+   ++  P     E  I KI    R     + E +               K   +
Sbjct: 398 QDELNLQRIINVPKRKVGEKGIEKIIAYARENDLNLLEALSHIKEISGLTAVGKEKLLEM 457

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQN 542
              I EL  +A   +       ++                   I+ +DEF N  L  E  
Sbjct: 458 YDIIKELKDLAYTETASYIVQTLIDKIHYIDYINENYDDAEARIENIDEFKNSILELE-- 515

Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      L   LE     +         + V++MT+H +KGLE P+VFLV   +++F   
Sbjct: 516 NVVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGT 575

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                L +   EE  RL YV +TRA  +
Sbjct: 576 ----------------------------------RAMLDEKEMEEERRLCYVALTRAEKK 601

Query: 662 LIICKH 667
           L +   
Sbjct: 602 LYLSHA 607


>gi|289428125|ref|ZP_06429828.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|289158725|gb|EFD06926.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|313807183|gb|EFS45676.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2]
 gi|313825512|gb|EFS63226.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1]
 gi|327327125|gb|EGE68904.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            HL096PA3]
 gi|327443750|gb|EGE90404.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2]
          Length = 1072

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 148/995 (14%), Positives = 297/995 (29%), Gaps = 122/995 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         I    +  +       L KA           I +    L+    +   +
Sbjct: 122  AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K +   +   +   L    K+  D +  I    +     +  L  +       A Y+ 
Sbjct: 182  PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+ +L
Sbjct: 234  LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
               F    + H     + AVGD  Q+IY + GA    +L   R    +    G    ++ 
Sbjct: 291  ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  + R    I+   +               ++  +R   S   + G     +       
Sbjct: 345  LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
             Q     E       ++          +  A  +       TI         +  D  +L
Sbjct: 391  GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            VR+  D   +            + V   +   L     I  ++A  R ++ ++DD +   
Sbjct: 443  VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498

Query: 440  MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483
            +L +P    S DD+  +  +                      + + + +    G  + Q 
Sbjct: 499  LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558

Query: 484  VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             +K +   I      +  SP D    I           +   +        LD   N   
Sbjct: 559  ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRGHLDALWNAIR 618

Query: 538  RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               ++    ++  +++ L         + RA + + + V + TVH AKGLE P+V + D 
Sbjct: 619  EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678

Query: 594  GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
               VF              ++PS        I  P S S  +  + +    + S   E  
Sbjct: 679  AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737

Query: 649  RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA ++L++  H      +       + D++ D           +  + I   
Sbjct: 738  RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797

Query: 708  -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                 +         +    + +  +K       +  ++  P +
Sbjct: 798  TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801
               ++   L+ +    +           ++    G   H+         + I      + 
Sbjct: 858  LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917

Query: 802  KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                    T+ A        +   L S+ +  E      A      + ++V         
Sbjct: 918  AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971

Query: 861  DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              ++ GR+D +     +     + ++KT      +          QLSIY      +   
Sbjct: 972  QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                +  +  +V   +             A I T 
Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|313668563|ref|YP_004048847.1| ATP-dependent DNA helicase [Neisseria lactamica ST-640]
 gi|313006025|emb|CBN87484.1| ATP-dependent DNA helicase [Neisseria lactamica 020-06]
          Length = 671

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 113/611 (18%), Positives = 204/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  K    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVLQTASNIWEQQTARVYASYQETLKSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFVLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +++L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVVKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D          IQ  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEAEWVVSEIVKQKLIGGD---------KIQYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + + +DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPDDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALAALNNTNRQHLQAFMDMFGNCRAKAETGDTGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + E +++  R       ++ EL   +       
Sbjct: 478 SLLKEIGYENHLMQNEEGKAGEIKWRNVGELVSWFARKGGEDGKNIIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEEADAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  +L +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRRLTLTHCVKRKKQGIWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|224826111|ref|ZP_03699214.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
 gi|224601748|gb|EEG07928.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
          Length = 715

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/630 (16%), Positives = 195/630 (30%), Gaps = 112/630 (17%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  Q+     ++         +  A       L A Y+   ++  V+DF +L++ + ++L
Sbjct: 138 RAVQNFINGNKESGVRADALSAHDAYTKKLIELYAAYDAQCQREGVVDFAELLLRSYEVL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +    A +          IL+DE QDT+ +Q+  ++ L                LFAVG
Sbjct: 198 SRN---AALAEHYKSRFRFILVDEFQDTNRLQYAWLKLLAG----------RDNALFAVG 244

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GAE   +                    + L  ++RS  +ILT  + +   
Sbjct: 245 DDDQSIYAFRGAEVGNMRSLLVDFGIDGP--------VRLEQNYRSAGNILTAANALIEK 296

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +   G +                     LW       ++        + +Y D      
Sbjct: 297 NDGRLGKN---------------------LW------TEAGEGEPIRLYDAYSDGDE--- 326

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   +  +               +  DI VL R    +  +         + 
Sbjct: 327 -----AEFICDEVKALQRDG----------WRLSDIAVLYRSNAQSRALEHAL----VNA 367

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ- 459
           K+           +   IK  +A  R I + +DD + + ++  P        +  +    
Sbjct: 368 KLPYRVYGGLRFFERQEIKHALAYLRLIANPDDDNALLRVINIPARGIGARTVEGLQAAS 427

Query: 460 RHETETVYE-YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
           R +  ++++      +    +     +  I +L       +  +  +L+L     +  + 
Sbjct: 428 REQGISLWQAACASGSGRAAASLGKFVLLIDQLRARTSTLNLAETVSLLLDDSGLKAMYE 487

Query: 519 SRF--GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575
           +      E +  LDE +N             Q ++  L        +    A  + +++M
Sbjct: 488 ADKKESEERLANLDELINAAAGFFPQDPE--QAVVEFLSAASLEAGEHQAEAGQDALQLM 545

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH AKGLE   VF+      +F H++                                 
Sbjct: 546 TVHAAKGLEFDAVFVSGLEEGLFPHENSFNDP---------------------------- 577

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    EE  RL+YV +TRA  +L +    +      S        V +       V
Sbjct: 578 ------KGLEEERRLMYVAVTRARKRLYLSSAQSRMLHGLSRYPIRSRFVDEVPGQLLHV 631

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                   +         W    P + P  
Sbjct: 632 -LSATVKPLPVSHNARAPWLEQPPPSRPSA 660


>gi|260582117|ref|ZP_05849911.1| DNA helicase II [Haemophilus influenzae NT127]
 gi|260094749|gb|EEW78643.1| DNA helicase II [Haemophilus influenzae NT127]
          Length = 727

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 235 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +K+ +   +  G +                     LW 
Sbjct: 277 -KAETIRLEQNYRSTANILNSANKLIANNSDRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 612

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 613 KLTISYAESRR 623


>gi|227357154|ref|ZP_03841523.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906]
 gi|227162686|gb|EEI47653.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906]
          Length = 718

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 117/724 (16%), Positives = 221/724 (30%), Gaps = 132/724 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L   Q S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVEQASPFSIMAVTFTNKAAAEMRHRIEDLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    + + +   ++  +K    +  +   R         
Sbjct: 90  FHSLAHRLLRAHYLDAGLPQDFQIIDSDDQYRLIRRIVKSMALDDKQWPPRQGMWYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +        T    +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 150 KDEGLRPQHIQTYGNPVETTWLKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---QI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    +IL+DE QDT+ IQ+  IR L                +  VGD+ QSIY +
Sbjct: 207 LEHYQHRFTNILVDEFQDTNRIQYAWIRMLAGQ----------TGKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +                    I L  ++RST++IL   + + +   +  G + 
Sbjct: 257 RGAQVENIQNFLNEFP--------GAETIRLEQNYRSTSNILKAANALIANNSDRLGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +       AR +
Sbjct: 308 --------------------LW-------TEGAEGEPISLYCAFNDLDE-------ARYV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     D  +L R    + ++            +       
Sbjct: 334 VGRIKRWHEEGGAL----------ADCAILYRSNAQSRIMEEAL----LQANMPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD ++  R   ++ DD SF  ++ +P     +  +  +    R    T++E
Sbjct: 380 QRFFERQEIKDALSYMRLTANRHDDASFERVVNTPTRGIGDRTLDVVRQVARDNQITLWE 439

Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                   +  A   I+     ++ I  L +       H     I+     +  +    G
Sbjct: 440 SALQVIEHKMLAGRAIAAIARFLELIETLANETADMPLHVQTDRIIRDSGLKAMYEQEKG 499

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTV 577
            +     + L+E +  T +   Q+    L  L + L             A  + V++MT+
Sbjct: 500 EKAQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAALESGEGQADAYQDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE   VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFSQVFIVGVEEGMFPSQMSLDEGG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA  +L +    N     K         + +         +
Sbjct: 591 -----RLEEERRLAYVGVTRAMKKLTLTYAENRRLYGKEVSHRPSRFIGELPKECVEEVR 645

Query: 698 IKLT 701
           ++ T
Sbjct: 646 LRAT 649


>gi|291544571|emb|CBL17680.1| ATP-dependent DNA helicase PcrA [Ruminococcus sp. 18P13]
          Length = 781

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 97/584 (16%), Positives = 182/584 (31%), Gaps = 119/584 (20%)

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
             +  ++ +++D+ +               LA       +   Y+   KK+  +DF+D+I
Sbjct: 188 KSILGEISRAKDKLLDPDQLEAQASGDYRRLAI----AKIYREYQNRLKKSNAVDFDDII 243

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             T  +  +   +     K   +  +IL+DE QDT+  Q+ ++  L+           + 
Sbjct: 244 RLTVQIFSEFPDA---LEKYRSKYKYILVDEYQDTNQAQFRLVSLLSA----------AH 290

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           + L  VGD+ QSIY F GA  + +L  +               +I L  ++RST  IL  
Sbjct: 291 QNLCVVGDDDQSIYKFRGATIENILNFEEQF--------TGSKVIRLEQNYRSTGTILDA 342

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + V     + +                        LW              +  W    
Sbjct: 343 ANSVIRHNRSRKEKK---------------------LW-------TQGDKGSKIYWYRAM 374

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           + + +       A+ +A TI   +   +                VL R    + ++    
Sbjct: 375 NEMDE-------AKFVAQTILEHVQQGS----------TYSSHAVLYRMNAQSNMLERAF 417

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   +           D   IKD+ A    I +  D L F  ++  P     +  +
Sbjct: 418 ----VQSGVPYRVYGGMRFFDRKEIKDITAYLSVIDNSNDMLRFRRIINEPKRGIGDATL 473

Query: 454 FKICTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             +     +       + + A          +  + V K    L   A+     +FF L+
Sbjct: 474 SMLDDITRDLGLSPMEVLRNAGDYPVLSKKAASLRSVAKMFDALTEAAETLPLDEFFDLL 533

Query: 508 LGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRA 564
           L     +    +    G   ++ ++E  +  L   E     +L   + E+  Y    +  
Sbjct: 534 LEKTGYKAMLTAMGDEGVTKLENVEELKSTLLTYMEGAEEPTLSGFLEEISLYTDQDRN- 592

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                + V +MT+H+AKGLE   VFL+     +F      +                   
Sbjct: 593 -EEADDAVTLMTIHSAKGLEYDTVFLIGMEDGIFPGVRSMESEESLEEERRL-------- 643

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      YV +TRA  QL +   +
Sbjct: 644 --------------------------AYVAITRAKRQLYLVSAA 661


>gi|193065093|ref|ZP_03046167.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E22]
 gi|194426185|ref|ZP_03058740.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B171]
 gi|260845482|ref|YP_003223260.1| exonuclease V, beta subunit RecB [Escherichia coli O103:H2 str.
            12009]
 gi|192927224|gb|EDV81844.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E22]
 gi|194415493|gb|EDX31760.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B171]
 gi|257760629|dbj|BAI32126.1| exonuclease V, beta subunit RecB [Escherichia coli O103:H2 str.
            12009]
          Length = 1180

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 132/971 (13%), Positives = 299/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      ++ S  
Sbjct: 215  DETLASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++          +V 
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK----------SVG 482

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
              + +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 483  KNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872

Query: 720  ENTPLER------EETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
             +    +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDKQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          + ++    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      +      D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|330880966|gb|EGH15115.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 727

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/661 (18%), Positives = 215/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L   GD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVGGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L   A     H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKAMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|90581055|ref|ZP_01236855.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
 gi|90437751|gb|EAS62942.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
          Length = 723

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/549 (18%), Positives = 177/549 (32%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++ + +LL+       IR        HIL+DE QDT+ I
Sbjct: 172 RIYTAYQEACDRAGMVDFAELLLRSYELLRDN---KHIREHYQARFKHILVDEFQDTNSI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + R            
Sbjct: 229 QFAWLRLMAG----------PDCHVMIVGDDDQSIYGWRGAKIENIQRFLNEF------- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +  S I L  ++RST +IL   +++ +      G                       LW
Sbjct: 272 -KDASSIFLEQNYRSTGNILNAANELIANNNERMGKK---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S F+ L +       AR     I                  
Sbjct: 310 -------TDGGEGEPISLYSAFNELDE-------ARFAVGKIKEWRDQGGSL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +   L R    + ++            +           +   IKD ++  R I ++
Sbjct: 348 --NETAFLYRSNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD SF  ++ +P     +  +  I    R    T+++                +  +  
Sbjct: 402 NDDASFERVVNTPTRGLGDRTLETIRLAARDRGLTMWQSSIALLEEQVLAGRAANSLRRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE- 540
           I+ I+ L         +     ++     R  +    G +     + L+E +  T + E 
Sbjct: 462 IELINALEDDTADLPMYQQTDEVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFEI 521

Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            + + S                        + V++MT+H+AKGLE PVVF+V     +F 
Sbjct: 522 PEEAESMTPLAAFLAHAALEAGDGQADDFEDAVQLMTMHSAKGLEFPVVFMVGVEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                   +    EE  RL YVGMTRA 
Sbjct: 582 SSRTT----------------------------------EEVGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 608 QKLYITYAE 616


>gi|157375075|ref|YP_001473675.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3]
 gi|157317449|gb|ABV36547.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3]
          Length = 1251

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 149/982 (15%), Positives = 312/982 (31%), Gaps = 144/982 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             K +WP     +  +   + LS         KKA    + +      + +   S+     
Sbjct: 251  LKLIWPRERDAIETLLHALPLS----GVRFGKKADAYPKLAIMLDAMDNWCKFSNSLPPM 306

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
            K     ++   ++NK      E     Q   +   +R                   ++A 
Sbjct: 307  KVMESLSLSELKLNKGG----EVPTPEQAPVLDHIERLCALIKDFIPSFLFCARNGISAR 362

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLI 191
            + + K +  +L  +DL+I     L+         +  +   I +     LIDE QDT  +
Sbjct: 363  FAQQKSERNLLTPDDLLITLEQALRPNQEEVSGQAISLANTIAKRFPVALIDEFQDTDPL 422

Query: 192  QWEVIRSLTED---------------FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            Q+ +   + +                      T S   +L  +GD KQ+IY+F GA+   
Sbjct: 423  QFAIFNRIYQQPSVDAMGSDDSLIAIDEATAGTSSKNLSLLMIGDPKQAIYAFRGADIHT 482

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
             ++ +           Q      L  ++RS+ +++  V+ +F   ++A         ++ 
Sbjct: 483  YIQAR----------EQTSEHYNLDTNYRSSRNMILAVNALFENRDDAFISQAIPFESVL 532

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                   +         V     +     +         L + ++   LA   A  I+ +
Sbjct: 533  PSPFADNK-------VLVEKSTTTSALKIKLLSEDPEKGLNKTTARKHLAEDAASEIARL 585

Query: 357  I-GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            +  +        ++ ++AKDI VLVR R +      + +   ++ +I  V   R  + + 
Sbjct: 586  LTESQDGECTISEKPLKAKDIAVLVRDRNEAA----VIKESLSNRQIGAVFLSRDSVFNT 641

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            L  +++  +   + + +D+ +    L + L  ++   I          +T+ E      +
Sbjct: 642  LEAREMALVLHALATPKDERALRSALATSLLGYNALAIHGFNQDEMVRQTLLEQFDGLHH 701

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
              + +       +  L+++A           +L ++ G ++            L E L  
Sbjct: 702  NWLRR-----GVMPALLNLANETK---LIERLLQSEDGERRLTD------FRHLAELLQQ 747

Query: 536  TLRNEQNSYSSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                +      +  L++  E            +    +  N V+I+T+H +KGLE PV F
Sbjct: 748  ----KATELDGISALVNWYEQALIENHANEEAQLRLESEQNLVQIVTIHKSKGLEYPVCF 803

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +              +    P L  +    +W  +            +  K+    E  R
Sbjct: 804  IPFVSLA-----RDNRRKPAPMLYHENNKLVWDIEQSDEG------WERHKRENLAEDLR 852

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD-----MVYDSFHNDERVKKIKLTNSI 704
            LLYV MTR   Q  +   ++    KK+   +         +            I+ +   
Sbjct: 853  LLYVAMTRPVYQCYLYIANHCRFTKKAGITSQLHETGIGYLLGIEEKACEFSLIETSAKR 912

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN--------DINEPYI 756
               E I+         +  LE+    ++L+  + + ++L++P +         D+    +
Sbjct: 913  LMSEAISVCEMADDVSSQVLEKMSDDQELLAPKVLKRRLYTPWRVGSYSGLVKDLPHERV 972

Query: 757  LNPSTIDTKGKT--------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            L  +  +   +          L S  +  +  N G  +H +L++I    + +        
Sbjct: 973  LPGADDEAFPELEEIKDELDPLPSRFTFERGANAGSFMHLVLELI-DFTQAENGLTEQLP 1031

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENP-------MMTTAMSCDSYSEVSVSGKINCPKKD 861
                           L      LL+ P        +    +     E+     I   K D
Sbjct: 1032 VAMERYGIDESWLDVLTHWYLDLLDAPIVQDGSLKLGQLTNNQKLVEMEFYLPIAALKAD 1091

Query: 862  ---------------------IIISGRIDQISISQQNIFIFEYKTHHHVPQ--------- 891
                                  ++ G ID     Q   +I +YK++H             
Sbjct: 1092 KLNALLQEYGYSAGLNFESLKGMLKGFIDLTFEHQGQFYIADYKSNHLGDDFTHYGPDSM 1151

Query: 892  EIEHIPYTHIAQLSIYEKILKD 913
                  + +  Q  IY   L  
Sbjct: 1152 RGAIRSHRYDLQYIIYTLALHR 1173


>gi|120597399|ref|YP_961973.1| DNA-dependent helicase II [Shewanella sp. W3-18-1]
 gi|146294460|ref|YP_001184884.1| DNA-dependent helicase II [Shewanella putrefaciens CN-32]
 gi|120557492|gb|ABM23419.1| ATP-dependent DNA helicase UvrD [Shewanella sp. W3-18-1]
 gi|145566150|gb|ABP77085.1| ATP-dependent DNA helicase UvrD [Shewanella putrefaciens CN-32]
          Length = 722

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/551 (17%), Positives = 188/551 (34%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     +     +   HIL+DE QDT+ IQ
Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L                +  VGD+ QSIY + GA+ + + R  +          
Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLQDFPT------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L  ++RS  +IL   + + +      G                      +LW 
Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERMGK---------------------ELW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + +    S    F+ + +       AR I   I++                 
Sbjct: 310 ------TDEADGDPISLYCAFNEMDE-------ARFIVGRINDWHEKGG----------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            ++          +   IKD M   R I ++ 
Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +  T R +  T+++   +       A    S  +  +
Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRTTARQQELTLWQACLRLLDEKVLAGRAASAVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541
             I  L    Q  + +     ++ A   +  + +  G +     + L+E +      E  
Sbjct: 463 DLIVTLQEDTQDMALYRMADTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL + L        +    A  + V++MT+H+AKGLE  +VF+      +F  
Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                      +    +E  RL YVGMTRA +
Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 609 KLYITYAESRR 619


>gi|317494833|ref|ZP_07953244.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917158|gb|EFV38506.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 720

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 116/728 (15%), Positives = 221/728 (30%), Gaps = 144/728 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D  ++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHLDANLPQDFQILDSDDQLRLLKRIVKALNLDEKQWPPRQGM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   D      +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINNKKDDGLRPQHIESYGNPVEQTWLRVYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I     +   +IL+DE QDT+ IQ+  I+ L  +             +  VGD+ 
Sbjct: 204 P---QILNHYRERFTNILVDEFQDTNRIQYAWIQMLAGN----------TGKVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + + R                  I L  ++RST++IL   + +    + 
Sbjct: 251 QSIYGWRGAQVENIQRFLDDFP--------GAETIRLEQNYRSTSNILKAANALIENNDG 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G                       LW           + ++ S    F+ L +     
Sbjct: 303 RLGKK---------------------LW-------TEDGDGEKISLYCAFNELDES---- 330

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              R +   I                     D  +L R    + ++            + 
Sbjct: 331 ---RFVVNRIKAWQDNGGSL----------NDCAILYRSNAQSRVLEEAL----LQVAMP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHE 462
                     +   IKD +A  R I ++ DD ++  ++ +P     +  +  I    R  
Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNRNDDAAYERVVNTPTRGIGDRTLDVIRQAARDR 433

Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++   +               Q  I+ I  L         H     ++     RQ 
Sbjct: 434 QLTLWQATHELIQEKVFAGRASGALQRFIELIDALASDTADMPLHVQTDRVVRDSGLRQM 493

Query: 517 FISRFGN---EVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G      I+ L+E +  T +   ++    L  L + L        +    A  + 
Sbjct: 494 YEQEKGEKGQTRIENLEELVTATRQYSYEDEDEDLLPLQAFLSHAALEAGEGQADAYQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA  +L I          K         + +    
Sbjct: 591 -----------RLEEERRLAYVGVTRAMRKLTITYAETRRLYGKEVYHRPSRFIGELPEE 639

Query: 692 DERVKKIK 699
                +++
Sbjct: 640 CVEEVRLR 647


>gi|227875827|ref|ZP_03993953.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243]
 gi|227843575|gb|EEJ53758.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243]
          Length = 900

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/730 (15%), Positives = 205/730 (28%), Gaps = 164/730 (22%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L   +V                 + ++ +TL   +        
Sbjct: 78  GAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERVETLVGNAAKYMWVST 137

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F         +   +  +T+ F+      T+ +  +    +         K         
Sbjct: 138 FHSSCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNA 197

Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++       F    A      L   + A Y++  ++    DF+DLI     L ++     
Sbjct: 198 KNELVEPATFAEMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPE-- 255

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRTLFAVGDE 222
            I  K   +  ++L+DE QDT+  Q++++R L  D        G         L  VGD 
Sbjct: 256 -ILAKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS 314

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY+F GA  + +   ++             + + L  ++RST  IL+V + + S   
Sbjct: 315 DQSIYAFRGATIRNIEEFEQDFP--------GATTVYLEQNYRSTGTILSVANAIISENS 366

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                +                     LW       ++   P+   + +         + 
Sbjct: 367 GRHKKN---------------------LW------TEAGDGPKAIMFAA--------DTE 391

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  I   I +     T             +  V  R    +  +  +         +
Sbjct: 392 RDEAAFIIREIRDAHTAGTP----------WDEFAVFYRTNSQSRALEEML----TRENV 437

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                      D   IKD +A      +  DD + + +L  P     +    KI      
Sbjct: 438 PYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLGDVAQTKIREAARL 497

Query: 463 TETVYEYIQK-----------FANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGA 510
           + T +    +            +    +    ++  +  L  + +      +     L  
Sbjct: 498 SGTSFGQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDEAGAPLDEILGTALED 557

Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHS 566
                +  +    +    I+ L E          +   S L + +  +     T +    
Sbjct: 558 SGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFLERISLVADTDQLPDQ 617

Query: 567 ANHN-------------------------------EVRIMTVHTAKGLESPVVFLVDTGS 595
            +                                 EV +MTVHTAKGLE   VF+     
Sbjct: 618 GSKEVAAKEMAPREPETNVSEASGDHPNPAPETKPEVTLMTVHTAKGLEFNTVFVTGMED 677

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F H                                            EE  RL YV +
Sbjct: 678 GLFPHSRSLDDP----------------------------------EAIEEERRLAYVAV 703

Query: 656 TRASDQLIIC 665
           TRA  QL + 
Sbjct: 704 TRARRQLYLT 713


>gi|159185029|ref|NP_355024.2| DNA helicase II [Agrobacterium tumefaciens str. C58]
 gi|159140303|gb|AAK87809.2| DNA helicase II [Agrobacterium tumefaciens str. C58]
          Length = 824

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/548 (18%), Positives = 179/548 (32%), Gaps = 108/548 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y+   K     DF DL+++   + ++      I  +  Q+  +IL+DE QDT+ 
Sbjct: 220 RELYAAYQARLKTLNACDFGDLLLHPISIFRRH---TDILKEYHQKFRYILVDEYQDTNT 276

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +           P+ +  VGD+ QSIY + GAE   +LR  +        
Sbjct: 277 AQYMWLRLLAQR------AKDEPQNVCCVGDDDQSIYGWRGAEVDNILRFDKDFP----- 325

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL     + +  E   G +  +  +                
Sbjct: 326 ---GAKVIKLERNYRSTEHILGAAGHLIAHNEGRLGKTLFTERSSP-------------- 368

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                       + ++    + +DS  +       AR +   I  +            + 
Sbjct: 369 ------------DDEKVVVHAAWDSEEE-------ARAVGEEIEQLQR----------KN 399

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +  D+ +LVR              L     ++          + L I+D MA  R +  
Sbjct: 400 YKLNDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVCQ 455

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++ +P     +  I  +    R     +           +           
Sbjct: 456 PADDLAFERIVNTPKRGLGDTTIRNLHDYARARDIPMLAAAADIIETDELKPKARKALFD 515

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           V++       + +          IL        + +    E    L+         E   
Sbjct: 516 VVQDFRRWQGLLENTEHTTLAEQILDESGYTAMWQADKTAEAPGRLENLKELIRSME--- 572

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S + +   LE     +    +A  + V IMT+H+AKGLE   VFL      +F H+  
Sbjct: 573 --SFESMRGFLEHVALVMDAEQNAELDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQR- 629

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                           +    +S  EE  RL YVG+TRA     
Sbjct: 630 -------------------------------ALDEGGRSGLEEERRLAYVGITRAKKLCH 658

Query: 664 ICKHSNTS 671
           I   SN  
Sbjct: 659 IWFVSNRR 666


>gi|21323542|dbj|BAB98169.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC
            13032]
          Length = 1073

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 142/1025 (13%), Positives = 285/1025 (27%), Gaps = 156/1025 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +          L       +    S  + T           +          +  + ++ 
Sbjct: 118  TVSTYDSYAGTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTE 177

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-A 130
            + L        +++T E  ++  D   KL     +    RD  N             L  
Sbjct: 178  YLLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 237

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              L    +E      V+ F + +     L         + Y   +    +++DE QDTS 
Sbjct: 238  LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHP---QVGYSQRRRFRVVMLDEYQDTSH 294

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q  ++ SL      G   +       AVGD  Q+IY + GA    +            +
Sbjct: 295  SQRVLLSSLFGGTDPGLTVN-------AVGDPMQAIYGWRGATAANLENFVDDFPVIHLD 347

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
               +    EL  S+R+  ++LT+ + V        G  +  T T++    R G       
Sbjct: 348  GKTRAPKNELTTSWRNPPEVLTLANAV---SREVLGSPDAPTRTVQPLQPREGAP----- 399

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                              W        +  +  ++    A          T  +      
Sbjct: 400  -----------TGEVSLGWFGTAAQEREFVADEMVKHWNARE-----EKGTFTA------ 437

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                   VLVRK++ +  +            I V       L D   I DL++L   ++ 
Sbjct: 438  ------AVLVRKKRHSAPMAEEL----TKRGIPVEIVGLSGLLDIPEIADLISLATMLVR 487

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKIC-------------TQRHETETVYEYI------- 470
              D+ + + +L  P       D+ ++               +    + + E         
Sbjct: 488  PHDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSRERREKNPDPLAELDAIIEEAT 547

Query: 471  --------------------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                                 +F+  G+S+ + +   +  L   +   S  D F  I   
Sbjct: 548  AIEPEAVVGLADAVADLGEGDRFSEEGLSRLKRLATQLRYLRKYSLGRSVADIFADIETV 607

Query: 511  KKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT----I 561
               R + +SR             LD+F         +    L EL+   E          
Sbjct: 608  FNIRTEVLSRQDPHADGAAGTVHLDKF---AEEVASHGGIGLPELLDYFELAKDQEEGLE 664

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDD 615
                +   + V+I+TVH AKGLE  +V ++   +  +  K    +            +  
Sbjct: 665  PGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKASTWLKNVTMIPSSLRGDAG 724

Query: 616  PGIPIWIPQSKSRNNIVS----DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             G P            +     +    +++  +EE +RL YVG+TR+   L++   +   
Sbjct: 725  TGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFYVGITRSERVLLVTGSALDE 784

Query: 672  NEKKSNQR----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            +  K+                   +W++         +  + +                 
Sbjct: 785  SGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAEGVFPQLLAADSSGADLVRG 844

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------DTKGK 767
                 N     E   ++ +       +  S    ++  P  L  + +            +
Sbjct: 845  PRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRELTATDLVSMKNNPEQFARR 904

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                     N    RG + H+ L+         R                     +  + 
Sbjct: 905  MRRPVPFKPNTYAKRGTLFHQWLE--------DRFGSTALLDETELPGIDEDYSDDAFIE 956

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
                L +  + +       +   V         + +I GR+D +  +     + ++KT  
Sbjct: 957  ----LRDAFLGSTWEN--RTPEFVEHPFEVTIGEHVIRGRMDAVFHTDGTWMVVDWKTGR 1010

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFA 945
                         I QL++Y          +   +     YV+    F        +  A
Sbjct: 1011 TPTGPEMDAA---IIQLAVYRLAWARLKGLEPEEVRAAFHYVAHDHTFEPNDLPTQEELA 1067

Query: 946  EISTK 950
             + ++
Sbjct: 1068 RLLSQ 1072


>gi|145641213|ref|ZP_01796793.1| DNA helicase II [Haemophilus influenzae R3021]
 gi|145274050|gb|EDK13916.1| DNA helicase II [Haemophilus influenzae 22.4-21]
          Length = 726

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/551 (19%), Positives = 193/551 (35%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +K+ +   +  G +                     LW 
Sbjct: 276 -KAETIRLEQNYRSTANILNSANKLIANNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 526 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTISYAESRR 622


>gi|294085888|ref|YP_003552648.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665463|gb|ADE40564.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 743

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/545 (18%), Positives = 160/545 (29%), Gaps = 121/545 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+        +DF DL+++   + +       +       I HI++DE QDT++
Sbjct: 180 QQLYKDYQARLLTLNAVDFGDLLLHMLTIFQHHPD---VLADYHGRITHIMVDEYQDTNV 236

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R LT               L  VGD+ QSIY + GAE   +LR +         
Sbjct: 237 AQYLWLRLLTGQ----------RNNLCCVGDDDQSIYGWRGAEVGNILRFESDFP----- 281

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L  ++RST  IL     V +  E   G +                      
Sbjct: 282 ---GAKTVRLEENYRSTGHILAAASTVIARNETRLGKT---------------------- 316

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                S  D +       W    +           AR I+  + +M              
Sbjct: 317 --LFTSADDGEKVRVNGYWDGADE-----------ARSISSHVESMQQNG---------- 353

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                I VLVR    T               +           +   I+D +A  R I  
Sbjct: 354 AHLSQIAVLVRAGFQTREFEERFIA----IGLPYRVVGA-RFYERAEIRDAIAYLRLIAQ 408

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++  P        I  I    R   + +          ++      +    
Sbjct: 409 PADDLAFERIINVPKRGLGTASIQAIHIQARASQKPLLAAAIDLVETEELRPAARTALGR 468

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
            ++ I    +        D   ++L        +      +     + L E ++     +
Sbjct: 469 FVQDIGRWRNQIGSLHQGDLARMVLDESGYTTMWQMDKSPDAEGRLENLTELVSAMQDFD 528

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L   LE     +     +   EV +MT+H AKGLE   VFL      +F  
Sbjct: 529 S--------LQGFLEHISLVMDGDTVSEQGEVTLMTLHAAKGLEFDTVFLPGWEEGIFPS 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                  +        EE  RL YVG+TRA  
Sbjct: 581 QRT--------------------------------MDENGAIGLEEERRLAYVGITRARK 608

Query: 661 QLIIC 665
            + I 
Sbjct: 609 NVHIS 613


>gi|284052478|ref|ZP_06382688.1| ATP-dependent nuclease subunit A [Arthrospira platensis str. Paraca]
 gi|291571372|dbj|BAI93644.1| putative helicase [Arthrospira platensis NIES-39]
          Length = 1070

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 161/979 (16%), Positives = 302/979 (30%), Gaps = 148/979 (15%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ--QASQTQC--------I 62
               I       P      +N+ +  S              +   Q  + +          
Sbjct: 149  LSRILATFLDDPLMAERSLNQQIDWSELAQKLRDRALEDLINHPQWRELKDILTSNIGKP 208

Query: 63   EERFSLLSSFFLTQKFTPQKNI-----------------ITQEINKKSPDLKEKLKKSQD 105
            E++  ++    ++   + +                      +   +    +K+ LK  ++
Sbjct: 209  EDKLEVIRQATVSAMLSLENGDNVSENLQVFNKINIRYGSKKNWGENLQTVKDALKALRE 268

Query: 106  EFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK-------KNCVLDFEDLIINT 156
            E +K  I++     ++ ++      +   L   Y E K        +  VL F DL I  
Sbjct: 269  ELVKPCIKENLINAEVGEADHKLAEMLAALKEAYREVKDYLQQLKWQARVLTFADLEIGA 328

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
               L+       I+    Q     L+DE QDT+ IQ E++  LT+              L
Sbjct: 329  LTALQNNPT---IQLYYQQRWRTFLVDEFQDTNPIQGEILELLTQ-----------TADL 374

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
              VGD+KQSIY F  A+ +   + ++           +   I L  SFR+   ++  +++
Sbjct: 375  TIVGDKKQSIYGFRRADIQVFNKFRKRI------IDNQGDEIILNQSFRTHQQLINQINQ 428

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
            VFS                   + RI      +  +  V    ++ +  Q          
Sbjct: 429  VFS--------PLLGDLRQDLEAVRIDSPSPRETLQIFVIPKTAETDVTQR--------- 471

Query: 337  PQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLT 393
                      + IA T+  M+   T   + +    R IQ  DI +L R            
Sbjct: 472  -----RIAEGKLIAKTLKEMLDNQTPVFDKETQQLRPIQPGDIAILTRTWGPLDSYGEAL 526

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   +I +  +    L +    KD  +L +F+    DD++ V +L+SP F  S+  +
Sbjct: 527  AA----AQIPLAPSGGGNLLETQEAKDAWSLLKFLADPGDDIALVALLRSPFFTISDRLL 582

Query: 454  FK----ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
            FK    +      T     + +   +    +F   I  +  L+       P      I  
Sbjct: 583  FKVSSNLKLSHQSTSENMSWWKFLNSGSPVEFTKAIDPLKRLLKKRHIEPPSRLL-QIAD 641

Query: 510  AKKGRQQFISRFGNEVIDVLD-----EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
               G    I+        + D     E +   L    +    +   +  L+    T++R 
Sbjct: 642  RLTGYTATIANLPASNRRLADFNGFRELV-QILEQGTDDLFGVVRRLKRLKDKAVTVERP 700

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 N V +MT+  AKGLE P+V + D         +                     Q
Sbjct: 701  PINTSNAVSLMTIFAAKGLEWPMVVVADLSR---PTPNSSVPVYFDPEYGVAIACKDEDQ 757

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
             +    I + L    ++  + E  R+LYV +TR+ D +++       N            
Sbjct: 758  DRKDPVIYNWLKYRHQQREEAEALRILYVALTRSRDYILLTASQEKGN-----------Y 806

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +   +   +       T  IN D+ I     +             I   +  + +   LF
Sbjct: 807  LNKLYLGLQAANIPITTLEINSDDIIPPVPPSPL--------PPAINPPLLTEAMTSGLF 858

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSD-NQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                  ++E     P+               + NQ    G ++HK L+         R  
Sbjct: 859  ELPVTSLSEYKR-CPTRFKFIYILGHPGFSEEANQGMRIGQLVHKALEY------DIRD- 910

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
             I             +     +                      E++   ++      + 
Sbjct: 911  -IDKLQKFAEYGTDEQLLSEAICLAIDFDNTEEFK-IFRDH---EINREIELKLDILGVS 965

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
             +G  D I     + ++ +YK+   +       P  H  QL  Y K L   Y        
Sbjct: 966  FNGIADLI----GDNWVLDYKSDRVM------RPEHHNLQLWAYAKALN--YS----EAH 1009

Query: 924  LIYVSEPKVFIIPQNKLNK 942
            + Y+   +++ +P   L K
Sbjct: 1010 IAYLRHKQLYTLPPKLLEK 1028


>gi|123440590|ref|YP_001004584.1| DNA-dependent helicase II [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087551|emb|CAL10332.1| DNA helicase II [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 720

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/700 (17%), Positives = 223/700 (31%), Gaps = 144/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D  ++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I     +   +IL+DE QDT+ IQ+  IR L  D             +  VGD+ 
Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGD----------RSNVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + + R  +               I L  ++RST++ILT  + + +  + 
Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILTAANTLIANNDG 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RMGKN---------------------LW-------TDGAQGEPISLYCAFNELDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR +   I                     D  +L R    + ++            + 
Sbjct: 330 --ARFVVNRIKAWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD +A  R I ++ DD +F  ++ +P     +  +  I    R  
Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVIRQTARDR 433

Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +        A    S  Q  ++ +  L H       H     ++        
Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLAHETADMPLHVQTDRVIRDSGLWSM 493

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G +    ++ L+E +N T +   Q+    L  L + L        +    A  + 
Sbjct: 494 YEQEKGEKGQARVENLEELVNATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTIHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        EE  RL YVG+TRA  +L +C   +  
Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619


>gi|314966448|gb|EFT10547.1| UvrD/REP helicase [Propionibacterium acnes HL082PA2]
 gi|315092775|gb|EFT64751.1| UvrD/REP helicase [Propionibacterium acnes HL060PA1]
 gi|327327270|gb|EGE69046.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
            HL103PA1]
          Length = 1071

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 149/997 (14%), Positives = 293/997 (29%), Gaps = 139/997 (13%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-----ERFSLLSS 71
                + L    +  +NK    +   G   I +    L  A  +            +    
Sbjct: 135  AARAYQLAAEVIMGLNKAPLAATHMGPTFIAQAVVKLAGAMASHDASPGKVRRADARWRQ 194

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
              L        +  T+    +  D+ + L +  +    +                     
Sbjct: 195  MLL--------DAPTKRGGDRYADIDKWLSRVDEREELL--------------------- 225

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L A Y+  KK+  +++F D ++    L+        +  ++      +L+DE QDTS  
Sbjct: 226  DLVAAYQNLKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSA 282

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q +V+ +L   F    + H     + AVGD  Q+IY + GA    +L   R    +    
Sbjct: 283  QADVLAAL---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---E 336

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            G    ++ L  + R    I+   +               ++  +R   S   +       
Sbjct: 337  GTPAQVLSLATNRRCADQIINAAN--------------VASEELRQTLSSAAESDDHDPA 382

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                     Q     E       ++          +  A  +       TI         
Sbjct: 383  GDRAEVAVGQPLIAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------A 434

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  D  +LVR+  D   +            + V   +   L     I  ++A  R ++ +
Sbjct: 435  RWSDAAILVRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRLLVDR 490

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKIC----------------TQRHETETVYEYIQKFAN 475
            +DD +   +L +P    S DD+  +                         + + + +   
Sbjct: 491  QDDAAMATLLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDPDDVDIHLSDAVMEGRP 550

Query: 476  CGISKFQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
             G  + Q  +K +   I      Q  SP D    I           +   +      D L
Sbjct: 551  GGHERLQCAVKRVCAEIVEVDAHQGDSPDDLVLRIEAITGLIDDIAADDPHRSAARRDHL 610

Query: 530  DEFLNFTLRNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLES 585
            D   N      ++    ++  +++ L         + RA + + + V + TVH AKGLE 
Sbjct: 611  DALWNAIREVRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEW 670

Query: 586  PVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            P+V + D    VF              ++PS        I  P S S  +  + +    +
Sbjct: 671  PLVIIPDMAQGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKE 730

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-----DMVYDSFHNDERV 695
             S   E  RL YV +TRA ++L++  H      K S     Y     DM+   + +    
Sbjct: 731  DSQWAEA-RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGER 789

Query: 696  K--------KIKLTNSINKDEWIAYEWSTHHPENTPLERE------ETIKQLMDEQKIPK 741
                        +   +          S   P      R         +K       +  
Sbjct: 790  PDNVIQAGTPWPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQD 849

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHK 800
            ++  P +   ++   L+ +    +           ++    G   H+ + Q +       
Sbjct: 850  EVALPPRLTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIP 909

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINC 857
              +                       + +R L +  +  A     ++    ++V      
Sbjct: 910  LFDAEEVAELDEENTTQEAVAAEPSGAESRALRS--LCQAFEESRWAGATVLAVEKSFVM 967

Query: 858  PKKDIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 ++ GR+D +     +     + ++KT      +          QLSIY      +
Sbjct: 968  TIGQTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQA 1019

Query: 915  YPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                   +  +  +V   +             A I T
Sbjct: 1020 RGIDPSRVRAVFHHVGANETISAEPLLDADQVAAILT 1056


>gi|104784398|ref|YP_610896.1| DNA-dependent helicase II [Pseudomonas entomophila L48]
 gi|95113385|emb|CAK18113.1| DNA-dependent ATPase I and helicase II [Pseudomonas entomophila
           L48]
          Length = 727

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 106/572 (18%), Positives = 194/572 (33%), Gaps = 116/572 (20%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +  S    LT  + + + YE+A ++  V+DF +L++   DL + +     +  
Sbjct: 155 EGLRPRHIQASGDLFLTTMRDIYSAYEQACERAGVIDFSELLLRALDLWRDQPG---LLE 211

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +   HIL+DE QDT+ +Q+  +R L               +L AVGD+ QSIY + G
Sbjct: 212 HYQRRFRHILVDEFQDTNAVQYAWLRLLAG----------GGDSLMAVGDDDQSIYGWRG 261

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + + +                 +I L  ++RST  IL   + + +      G     
Sbjct: 262 AKIENIHQYTADFP--------DAELIRLEQNYRSTGGILKAANALIANNSGRLGK---- 309

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            +LW             +  +  + F+   +       AR +  
Sbjct: 310 -----------------ELW-------TDLGEGEPLTLYAAFNEHDE-------ARYVVE 338

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           TI ++I                 DI +L R    + ++           +I         
Sbjct: 339 TIESLIKQGNA----------RSDIAILYRSNAQSRVLEEAL----LRERIPYRIYGGQR 384

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470
             +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH   ++++ +
Sbjct: 385 FFERAEIKNAMAYLRLLEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQSSMWDAM 444

Query: 471 QKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRF 521
            +       K          I+ +  L         H     ++         Q+     
Sbjct: 445 CQLLAAKALKGRAASALGAFIELLDNLAAKVLDMPLHLMTQTVIEQSGLIIYHQEEKGEK 504

Query: 522 GNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
           G   ++ L+E ++     E +   + L  L + L              + + +++MT+H+
Sbjct: 505 GQARVENLEELVSAARNFETSDEDADLTPLSAFLGHASLEAGDSQADEHEDSIQLMTLHS 564

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P VFLV     +F HK   +                                  
Sbjct: 565 AKGLEFPYVFLVGMEEGLFPHKMSLEEPG------------------------------- 593

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                EE  RL YVG+TRA  QL++       
Sbjct: 594 ---RLEEERRLAYVGITRAMRQLVMTYAETRR 622


>gi|309703175|emb|CBJ02509.1| exodeoxyribonuclease V beta subunit [Escherichia coli ETEC H10407]
          Length = 1180

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDATGVASVIEEPTLTSHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++   + +   E+  
Sbjct: 967  PVD-PNWVREKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|288802440|ref|ZP_06407879.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18]
 gi|288334968|gb|EFC73404.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18]
          Length = 851

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 113/693 (16%), Positives = 200/693 (28%), Gaps = 128/693 (18%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                      +     +   +   YE   ++   +DF+D+++ T  L +       IR 
Sbjct: 164 AEDRAAIERDRSTRMPAI-HMIYKAYEARCRQANAMDFDDILLYTFLLFRDN---KEIRE 219

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           K  Q+  +IL+DE QDT+  Q  +I  L E          + R +  VGD+ QSIYSF G
Sbjct: 220 KYGQQFEYILVDEYQDTNYAQVSIISQLAE----------THRRICVVGDDYQSIYSFRG 269

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A    +L  K   +           + +L  ++RST  I+   + +    E         
Sbjct: 270 ANIDNILDFKNKFE--------DAKLFKLERNYRSTQLIVQAANSLMKHNE--------- 312

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
              I          G   L++   S  +                          A  +A 
Sbjct: 313 -RQIPKDVFSKEAEGDKILYKPCYSDRE-------------------------EAMVVAN 346

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +  +   D              +  +L R    +       R       I         
Sbjct: 347 ELKRIKRND---------DCDYGNFAILYRTNAQSRSFEDEFR----KQGIPYKIIGGLS 393

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE-- 468
                 IKD++A  R + + +D+ +F  ++  P        I K I   +  + +++E  
Sbjct: 394 FYQRKEIKDIIAYFRLVSNPDDEEAFRRIINYPTRGIGNTTIQKIIDCAQRNSVSLWETI 453

Query: 469 -----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                Y        ++K       I   I        ++    I+          S    
Sbjct: 454 LNPIQYGLDVNKGTMTKLFAFRTLISGFIKNVALKDAYELGKEIIEESGVSADIRSGSEP 513

Query: 524 E---VIDVLDEFLNFTLRNEQNSYSSLQE----LISELEQYPPTIKRAHSANH-NEVRIM 575
           E     + L+EF++       +     +E    L   L++           +   +V +M
Sbjct: 514 EDLARRENLEEFMSAMQGFVDSGREEGREENVYLTDYLQEVALYTDADKEDDDTPKVTLM 573

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE P VF+V     +F                                     
Sbjct: 574 TIHAAKGLEFPTVFVVGLEENIFPSPMS-------------------------------- 601

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT--------SNEKKSNQRTWYDMVYD 687
                K   EE  RLLYV +TRA    I+    N          N  +        +++ 
Sbjct: 602 --ASSKREIEEERRLLYVAITRAERHCILTNAKNRFRYGTMQIDNPSRFLNDFDPALIHV 659

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
               +      +     ++D      W  +   +   E E             +      
Sbjct: 660 EDEANSAFGGERRKMPWDEDNSARSPWGHNGSGDNFREYEPNKAYTGSRPWGQEYRQMGS 719

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
           +   + P             T  +   +    F
Sbjct: 720 RWQNSNPVASQFRADPKPKITERKRPEAAVDPF 752


>gi|170684073|ref|YP_001744988.1| exonuclease V subunit beta [Escherichia coli SMS-3-5]
 gi|170521791|gb|ACB19969.1| exodeoxyribonuclease V, beta subunit [Escherichia coli SMS-3-5]
          Length = 1170

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 132/973 (13%), Positives = 292/973 (30%), Gaps = 151/973 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC----IEERFS 67
              + + +          + I        +       K    +   ++ +     + E   
Sbjct: 218  RIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLE 277

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
              S  FL  +        T+   +            +    +  D+     +    L   
Sbjct: 278  KFSQCFLEDR--------TKAGGE----------TPRHPLFEAIDQLLAEPLSIRDLVIT 319

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                 +       K++   L F+D++   +  L+  +    +   I       +IDE QD
Sbjct: 320  RALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQD 378

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T   Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +      
Sbjct: 379  TDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 430

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
             T          L  ++RS   ++  V+K+FS  ++A    E     ++           
Sbjct: 431  YT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA---- 476

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362
                  +      +  P  + W    +S       S +A+  A  I + +         +
Sbjct: 477  ------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 530

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
             +    R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++
Sbjct: 531  MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEML 587

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L + +++ E + +    L + +   +  DI  +           E+           ++
Sbjct: 588  WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYR 639

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539
             + +    +  +    S  +    +L    G ++            + E L      L +
Sbjct: 640  QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLES 693

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            E      L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +    
Sbjct: 694  EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 753

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             +                      ++    N   + +   +     E  RLLYV +TR+ 
Sbjct: 754  DQAFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 800

Query: 660  DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                L +        +KK +       +       E      L   I         W T 
Sbjct: 801  WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 860

Query: 718  ------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPST 761
                    +       E   + +          +              D+     ++ + 
Sbjct: 861  QTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 920

Query: 762  IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
            + +  +    +     +  + G  +H L + +         N++          +  +  
Sbjct: 921  VVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWE 977

Query: 822  KNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK---------------- 859
              L   IT +L+ P+      +      D   E+     I+ P                 
Sbjct: 978  PVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLS 1037

Query: 860  ----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTH 900
                         ++ G ID +   +   ++ +YK++                    + +
Sbjct: 1038 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 1097

Query: 901  IAQLSIYEKILKD 913
              Q  +Y   L  
Sbjct: 1098 DLQYQLYTLALHR 1110


>gi|304321353|ref|YP_003854996.1| DNA helicase II [Parvularcula bermudensis HTCC2503]
 gi|303300255|gb|ADM09854.1| DNA helicase II [Parvularcula bermudensis HTCC2503]
          Length = 775

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 112/642 (17%), Positives = 201/642 (31%), Gaps = 120/642 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  L   Y+E  +     DF DL+++   + ++      I     +   +I++DE QDT+
Sbjct: 189 AIDLYTAYQERLRTFNAADFGDLLVHNLTIFRQE---TDILNAFRRRFRYIMVDEYQDTN 245

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q+  +R L  D             +  VGD+ QSIY + GAE + +LR ++  Q    
Sbjct: 246 IAQYLWLRLLGTDDEGRSGG-----NICVVGDDDQSIYGWRGAEVENILRFEKDFQ---- 296

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L  ++RST  IL+    + S  ++  G +  +                V 
Sbjct: 297 ----GAKVIRLEQNYRSTGAILSAATHIISHNKDRLGKTLWTD---------ADHGAAVT 343

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L               +  W +  +           AR I   I             + +
Sbjct: 344 L---------------RGVWDAPEE-----------ARVICDEIEA----------AQVK 367

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                DI +LVR                N   +           +    +D +A  R + 
Sbjct: 368 GRSLSDIAILVRASFQMRAFEERL----NTAGLPYKVVGGPRFYEREETRDALAYLRLVR 423

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------TETVYEYIQKFANCGISKFQ 482
           + +DDLSF  ++  P   F +  + ++     +                +      S  +
Sbjct: 424 NPDDDLSFSRIINKPRRGFGDKTLTQLSQVARQMGASLSAAGAALLETNELKGKSRSALK 483

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN 539
             +  I      A   +P      +L        + +    +     + L E +      
Sbjct: 484 EFLDNIARWRSAAADLAPGRLVETVLEESGYIAFWKASKTAQAQGKLENLKELVQAAEEF 543

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E             L+      +R+      +V +MT+H AKGLE PVVFL      +F 
Sbjct: 544 ETLEG--------YLDHVSLVAERSGDTGEGQVWLMTLHAAKGLEFPVVFLPGWEEDIFP 595

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                               I    +   EE  RL YVG+TRA 
Sbjct: 596 SGR--------------------------------AINDNGQVGLEEERRLAYVGVTRAR 623

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           ++  I   +N     +     W   +   F ++   K+I++ +        A E   +  
Sbjct: 624 ERCHISFAAN-----RQVYGRWQSSLPSRFIDELPEKEIEVLSEPGLYGVKAAELPAYSR 678

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                   E   +    Q+  +   +     +     L  S+
Sbjct: 679 FADIAADPERSYRTPGWQRAQRARGASTAPALEGAARLVASS 720


>gi|126741390|ref|ZP_01757064.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6]
 gi|126717526|gb|EBA14254.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6]
          Length = 794

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/712 (16%), Positives = 214/712 (30%), Gaps = 128/712 (17%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           +K  +   + +  +             L ++    + I  +    +   L   +   ++ 
Sbjct: 117 VKLLRRHAELAGLKSNFTILDTDDQIRLLKQLIKAEGIDDKRWPARM--LANIIDDWKNR 174

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            +   DR                   L A Y+   K+   +DF DL+++   + ++    
Sbjct: 175 ALT-PDRLPAADAGAYNHR----GTALYAQYQTRLKELNAVDFGDLLLHMVTIFQEH--- 226

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           + I  +  +    I++DE QDT++ Q+  +R L              R +  VGD+ QSI
Sbjct: 227 SDILLQYQRWFRFIMVDEYQDTNIAQYLWLRLLAG----------GHRNICCVGDDDQSI 276

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GAE   +LR ++              ++ L  ++RST  IL     V        G
Sbjct: 277 YGWRGAEVGNILRFEKDFP--------GAKVVRLEQNYRSTEHILAAASNVIRGNAGRLG 328

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                 +LW        +    ++     ++D   +       A
Sbjct: 329 K---------------------ELW-------TAAKGGEKVRLIGHWDGEEE-------A 353

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R I   I +M           +R +   ++ +LVR                    +    
Sbjct: 354 RWIGEEIESMQRG-----TRGQRPVDLNEMAILVRASHQMRAFEDRF----LTIGLPYRV 404

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  + L I+D MA  R ++S EDDL+F  ++ +P     +    KI    R    +
Sbjct: 405 IGGPRFYERLEIRDAMAYFRLVVSPEDDLAFERIVNTPKRGLGDKAQQKIQLMARSNGIS 464

Query: 466 VYEYIQ------KFANCGISKFQHVIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQF 517
           + E  +      +    G +  +  ++ I     +      S  +   +IL        +
Sbjct: 465 LLEGARLAVESGEIKGKGGTALRQFVEDIARWGRMTGDADISHMELAEIILDESGYTTMW 524

Query: 518 ISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
                 +    ++ L E +      E         L   LE     +         +V I
Sbjct: 525 QLDKNPDSPGRLENLKELVKALENFEN--------LQGFLEHVSLVMDNDKQDAEQKVSI 576

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE P VFL      +F  +                                 
Sbjct: 577 MTLHAAKGLEFPAVFLPGWEDGLFPSQRS------------------------------- 605

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            +        EE  RL YVG+TRA +   I      +  ++   +    +          
Sbjct: 606 -MDESGLKGLEEERRLAYVGITRAEEICTIS----FAGNRRVFGQWQSQLPSRFVDELPE 660

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                LT                   ++         ++ +         SP
Sbjct: 661 AHVEVLTPPGLYGGGYGAAAPGGLSASSGFSEAPVKSRIEERMAQADGYNSP 712


>gi|238793575|ref|ZP_04637199.1| DNA helicase II [Yersinia intermedia ATCC 29909]
 gi|238727165|gb|EEQ18695.1| DNA helicase II [Yersinia intermedia ATCC 29909]
          Length = 720

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 118/700 (16%), Positives = 222/700 (31%), Gaps = 144/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D  ++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDDKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I     +   +IL+DE QDT+ IQ+  IR L  D             +  VGD+ 
Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGD----------RSNVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + + R  +               I L  ++RST++ILT  + + +  + 
Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILTAANTLIANNDG 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RMGKN---------------------LW-------TDGAEGEPISLYCAFNELDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR +   I                     D  +L R    + ++            + 
Sbjct: 330 --ARFVVNRIKAWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD +A  R I +  DD +F  ++ +P     +  +  +    R  
Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNCNDDAAFERVVNTPTRGIGDRTLDVVRQTARDR 433

Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +        A    S  Q  ++ +  L H       H     ++        
Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLAHETADMPLHVQSDRVIRDSGLWSM 493

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G +    ++ L+E +N T +   Q+    L  L + L        +    A  + 
Sbjct: 494 YEQEKGEKGQARVENLEELVNATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        EE  RL YVG+TRA  +L +C   +  
Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619


>gi|148263393|ref|YP_001230099.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
 gi|146396893|gb|ABQ25526.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
          Length = 678

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/598 (14%), Positives = 193/598 (32%), Gaps = 120/598 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +A  +   Y+ A K    +DF+D+I+ T DLL+       +     +   ++++DE QDT
Sbjct: 168 MAAEVYPRYQSALKAFNAIDFDDIIMLTADLLQNHPE---VLQHWQERFRYVMVDEYQDT 224

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ ++  L   +            L  VGD+ QSIY + GA+   +L  ++      
Sbjct: 225 NASQYLLVNLLAGGY----------GNLCVVGDDDQSIYGWRGADVGNILDFEKDF---- 270

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               ++  +++L  ++RST +IL   + V       +     +           G    +
Sbjct: 271 ----KECRVVKLEQNYRSTGNILEAANHVIGHNAKRKEKRLWTA---------SGSGRPL 317

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            L      + ++    +                                    +     K
Sbjct: 318 DLIVMQDDEEEATTVVE-----------------------------------RMQMERFK 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             +   D  +L R    +       RF      I  V        +   +KD ++  + I
Sbjct: 343 HNLAYSDFAILYRTNAQSRPFEEQLRFE----DIPYVLIGGMQFYERKEVKDAISYLKVI 398

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKF 481
            +  D+++ + ++  P     +  + KI      +   + E   +            ++ 
Sbjct: 399 GNSNDEIALLRIVNFPRRGIGDSTVVKINQWSMEQGCPLLEAFGRVNEIEGIVEATRNRV 458

Query: 482 QHVIKYIH-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNF 535
           Q   + +   +   +      +    +        +      +  +     + +++ +N 
Sbjct: 459 QDFYRLLQGAVEEFSGEGDLAEKGRRLFKQLGLEDELYRTIDDPALARRKVENVEQIINS 518

Query: 536 TLRNEQNSY-SSLQELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLV 591
               E+     +L   + ++                  + V +M++H++KGLE P VFLV
Sbjct: 519 MAAYEERIPKPTLSGFLEKVSLMDEDRFSGKDKKEHGRDAVTLMSLHSSKGLEFPYVFLV 578

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  HK                                      +  T +E  RL 
Sbjct: 579 GMEEEILPHK----------------------------------RSIYEDFTVDEERRLC 604

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           YVG+TRA   LI+ +        K  +R     + +   +    +K      + ++E 
Sbjct: 605 YVGITRARKHLIMTRCLQRKKYGKLQERVPSRFLEEIPGHLLNEQKGAAAKVLTEEEA 662


>gi|229551867|ref|ZP_04440592.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1]
 gi|258539285|ref|YP_003173784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705]
 gi|229314811|gb|EEN80784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1]
 gi|257150961|emb|CAR89933.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705]
          Length = 750

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 138/795 (17%), Positives = 243/795 (30%), Gaps = 161/795 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + K +   P                      + K     +A       E+ +
Sbjct: 66  AAREMRERVGKLV--DPEIARDIWVSTFHALCVRILRRDIDKL-GYNRAFTIADPAEQLT 122

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L+          P K    + I       K +L   Q           TY   ++     
Sbjct: 123 LVKHILADFNLDP-KRYDPKSILGAISGAKNELIDPQ-----------TYSDEQANSPFT 170

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                + A Y++  + +  LDF+DLI+ T  L +K   +        ++  +I +DE QD
Sbjct: 171 KTVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET---LGFYQRKFRYIHVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++  L E +            L  VGD  QSIY + GA  + +L  K+   K 
Sbjct: 228 TNEAQYRLVHMLAEGY----------HNLCVVGDADQSIYGWRGANMQNILDFKKDYPK- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST  IL+  + V     N Q  +                   
Sbjct: 277 -------AQVILLEQNYRSTKTILSAANDVIKNNLNRQAKT------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW       ++    +   + +         S +  A  +   I   +          
Sbjct: 311 --LW------TENATGDKITYYRA--------QSETDEAIFVIRRIEAEMAEHHR----- 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  I            I           D   I+D +A  R 
Sbjct: 350 ----KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYDRKEIRDALAYFRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKF 481
           +++ +DD+SF  ++  P        + K+         ++ E          +       
Sbjct: 402 VVNPDDDMSFNRIVNEPKRGIGNTSVAKLEAFANQHDWSLLEAAANAELSPISGKARGNL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
               K I  L    +  +  +    IL          +    E     + L+E L+ T  
Sbjct: 462 AQFGKMIQRLGQRRKDLNVTEMMQAILDDSGYLGTLRAANTLEAETRVENLEELLSVTQG 521

Query: 539 N------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E        + ++EL             +  EV +MT+H AKGLE PVVFLV 
Sbjct: 522 FDARYQPENEDSDIFVDFLAELALLSDQD--EVEEDAQEVTLMTLHAAKGLEFPVVFLVG 579

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F                                        + +   EE  RL Y
Sbjct: 580 MEEGLFPLS----------------------------------RAAMDEGELEEERRLAY 605

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA  +L +                +  M+Y    N+   + I+  +    D   A 
Sbjct: 606 VGITRAKQKLYLT-------------NAYARMLYGQRQNNPASRFIEEIDPELLDISGAA 652

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
           +  +  P     +R  +              +S        P  + P+     GKT+ E+
Sbjct: 653 QPKSDIPFINRTDRAFSSP------------YSRHPETTGTPVTVKPAPTTGAGKTSWEA 700

Query: 773 LLS-DNQTFNRGLII 786
               +++ +  G ++
Sbjct: 701 GDKVEHRKWGIGTVV 715


>gi|149204193|ref|ZP_01881161.1| UvrD/REP helicase [Roseovarius sp. TM1035]
 gi|149142635|gb|EDM30680.1| UvrD/REP helicase [Roseovarius sp. TM1035]
          Length = 779

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 110/645 (17%), Positives = 198/645 (30%), Gaps = 117/645 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   K+   +DF DL+++   + ++ D    +  +  +   +IL+DE QDT++ 
Sbjct: 195 ALYHQYQARLKELNAVDFGDLLLHVVTIFQRHDD---VLRQYQRWFRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               ++I L  ++RST  IL     V +   +  G                      +LW
Sbjct: 296 --GAAVIRLEQNYRSTPHILAAASGVIAGNRDRLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++     ++D   +       AR I   I  M            R  
Sbjct: 333 -------TEAEEGEKLRLIGHWDGEEE-------ARWIGEEIDAMQRG-----TRGMRPY 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               + +LVR                    +           + L I+D MA  R ++S 
Sbjct: 374 SLDAMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRLVVSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484
            DDL+F  ++ +P     +    KI  T R     + E  +   +          + + +
Sbjct: 430 SDDLAFERIVNTPKRGLGDKAQQKIQMTARQHGVPLVEGARLLLDDKGITGKAAGELRLL 489

Query: 485 IKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           I  +     +      S  +   +IL        + +    E    ++ L E +      
Sbjct: 490 IDGLGRWGRMVGDADISHVELAEMILDESGYTGMWQNDKTPEAPGRLENLKELVKALEGF 549

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +         +V +MT+H AKGLE P VFL      +F 
Sbjct: 550 EN--------LQGFLEHVSLIMDNEAGEEGEKVTLMTLHAAKGLEFPAVFLPGWEDGLFP 601

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +       +                                   EE  RL YVG+TRA 
Sbjct: 602 SQRSMDESGVRG--------------------------------LEEERRLAYVGITRAE 629

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +   I    N     +   +     + +       V               +    +   
Sbjct: 630 EVCTISFAGNRRVYGQWQSQMPSRFIDELPEGHVDVLTPPGLYGGGYGAAASSGIESRAA 689

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
           E          +      + P    S  ++ + +   ++  T+  
Sbjct: 690 EANVYNSPGWRRLQARGAERPLSQPSEARHSVIDLQAMSAHTVGE 734


>gi|145294939|ref|YP_001137760.1| hypothetical protein cgR_0885 [Corynebacterium glutamicum R]
 gi|140844859|dbj|BAF53858.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1070

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 142/1025 (13%), Positives = 287/1025 (28%), Gaps = 156/1025 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +          L       +    S  + T           +          +  + ++ 
Sbjct: 115  TVSTYDSYAGTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTE 174

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-A 130
            + L        +++T E  ++  D   KL     +    RD  N             L  
Sbjct: 175  YLLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 234

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              L    +E      V+ F + +     L         + Y   +    +++DE QDTS 
Sbjct: 235  LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHP---QVGYSQRRRFRVVMLDEYQDTSH 291

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q  ++ SL      G   +       AVGD  Q+IY + GA    +            +
Sbjct: 292  SQRVLLSSLFGGTDPGLTVN-------AVGDPMQAIYGWRGATAANLENFVDDFPVIHLD 344

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
               +    EL  S+R+  ++LT+ + V        G  +  T T++    R G       
Sbjct: 345  GKTRAPKNELTTSWRNPPEVLTLANAV---SREVLGSPDAPTRTVQPLQPREGAP----- 396

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                              W        +  +  ++    A          T  +      
Sbjct: 397  -----------TGEVSLGWFGTAAQEREFVADEMVKHWNARE-----EKGTFTA------ 434

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                   VLVRK++ +  +            I V       L D   I DL++L   ++ 
Sbjct: 435  ------AVLVRKKRHSAPMAEEL----TKRGIPVEIVGLSGLLDIPEIADLISLATMLVR 484

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKIC-------------TQRHETETVYEYI------- 470
             +D+ + + +L  P       D+ ++               +   ++ + E         
Sbjct: 485  PQDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSRERREKNSDPLAELDAIIEEAT 544

Query: 471  --------------------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                                 +F+  G+S+ + +   +  L   +   S  D F  I   
Sbjct: 545  AVEPEAVVGLADAVADLGEGDRFSEEGLSRLKRLATQLRYLRKYSLGRSVADIFADIETV 604

Query: 511  KKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT----I 561
               R + +SR             LD+F         +    L EL+   E          
Sbjct: 605  FNIRTEVLSRQDPHADGAAGTVHLDKF---AEEVASHGGIGLPELLDYFELAKDQEEGLE 661

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDD 615
                +   + V+I+TVH AKGLE  +V ++   +  +  K    +            +  
Sbjct: 662  PGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKASTWLKNVTMIPSSLRGDAG 721

Query: 616  PGIPIWIPQSKSRNNIVS----DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             G P            +     +    +++  +EE +RL YVG+TR+   L++   +   
Sbjct: 722  TGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFYVGITRSERVLLVTGSALDE 781

Query: 672  NEKKSNQR----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            +  K+                   +W++         +  + +                 
Sbjct: 782  SGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAEGVFPQLLATDSSGADLVRG 841

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------DTKGK 767
                 N     E   ++ +       +  S    ++  P  L  + +            +
Sbjct: 842  PRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRELTATDLVSMKNNPEQFARR 901

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                     N    RG + H+ L+         R                     +  + 
Sbjct: 902  MRRPVPFKPNTYAKRGTLFHQWLE--------DRFGSTALLDETELPGIDEDYSDDAFIE 953

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
                L +  + +       +   V         + +I GR+D +  +     + ++KT  
Sbjct: 954  ----LRDAFLGSTWEN--RTPEFVEHPFEVTIGEHVIRGRMDAVFHTDGTWMVVDWKTGR 1007

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFA 945
                         I QL++Y          +   +     YV+    F        +  A
Sbjct: 1008 TPTGPEMDAA---IIQLAVYRLAWARLKGLEPEEVRAAFHYVAHDHTFEPNDLPTQEELA 1064

Query: 946  EISTK 950
             + ++
Sbjct: 1065 RLLSQ 1069


>gi|241896132|ref|ZP_04783428.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC
           33313]
 gi|241870646|gb|EER74397.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC
           33313]
          Length = 759

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/695 (17%), Positives = 215/695 (30%), Gaps = 139/695 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL-QQASQTQCIEE 64
           G    ++  L ++    +    V                 + ++   L +++        
Sbjct: 28  GAGSGKTRVLTHRVAHLIQDLDVLPWRILAITFTNKAAREMKERISQLVEESDAEAVWVS 87

Query: 65  RFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF- 120
            F  L+   L +       +K+    + + +   +K  LK    +  K   R     +  
Sbjct: 88  TFHALAVRILRRDIDKLGYKKDFSIIDASAQRTLIKRILKDFNVDIEKYAPRSVLGAISN 147

Query: 121 -------------KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                        K+T     +       Y+        LDF+DLI+ T +LL K     
Sbjct: 148 AKNAMEGPEEYVKKATGPFEEIVGKAYKEYQHRLALAQSLDFDDLIMLTIELLHKD---Q 204

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     ++  ++ +DE QDT+  Q+E++  L+             R L  VGD  QSIY
Sbjct: 205 EVLSYYQEKFLYVHVDEYQDTNDAQYELVTLLSA----------KHRNLAVVGDSDQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA  + +L   +               + L  ++RST  IL   + V          
Sbjct: 255 GWRGANMQIILNFSKEYP--------DAKTVMLEQNYRSTQTILDAANAVIRNNNERIAK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW       D+    +   +    D           A 
Sbjct: 307 K---------------------LW------TDNGEGEKITYYRGQSDRSE--------AL 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I + + T              KD  VL R    +  +            +     
Sbjct: 332 FVIKEIRDAVDTQQH---------DYKDFAVLYRTNAQSRGVEEAL----VKANMPYTVV 378

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                 D   I+D++A    + +  D+ +F+ ++  P     +  + K+         T+
Sbjct: 379 GGSKFYDRKEIRDVLAYLSLVTNPADNENFLRIVNEPKRGIGQTSLEKLRRFALENNWTL 438

Query: 467 YEYIQK------FANCGISKFQHVIKYIHELI-HIAQFCSPHDFFTLILGAKKGRQQFIS 519
            +           +    +K     K I + I  ++   S  D    IL       Q   
Sbjct: 439 LDSAANATLIPGLSARAANKLTDFAKMISDFIKQMSFDLSLTDLTKSILEKSGYEAQLKK 498

Query: 520 RFGNE---VIDVLDEFLNFTLRNEQNSYSSLQ------ELISELEQYPPTIKRAHSANHN 570
               E    ++ L EFL+ T   ++N   S +      + + EL           ++N N
Sbjct: 499 SPTPENEGRLENLSEFLSVTEEFDKNYEPSDESISKYVDFLGELALVSDLDNVDENSN-N 557

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++ +MT+H AKGLE PVVFLV     +F                                
Sbjct: 558 QITLMTLHAAKGLEFPVVFLVGMEENIFPLS----------------------------- 588

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                         EE  RL YVG+TRA ++L + 
Sbjct: 589 -----RAAADDDQLEEERRLAYVGITRAKEKLFLT 618


>gi|111220613|ref|YP_711407.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111148145|emb|CAJ59814.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 847

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/722 (14%), Positives = 203/722 (28%), Gaps = 134/722 (18%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
              +  L  ++   ++E I      +     +           + A Y++   +   LDF
Sbjct: 183 RHPARGLAAQISNLKNELIDWEAARDRASSHQE-----RTLAEVYAAYQQRLAQANALDF 237

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+ T +LL+       +     +   H+L+DE QDT+  Q+ ++R L          
Sbjct: 238 DDLIMMTVNLLQ---AFPDVAEHYRRRFRHVLVDEYQDTNHAQYVLVRELVGQPAHADAD 294

Query: 210 HS----------------------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
                                    P  L  VGD  QSIY+F GA  + ++  +      
Sbjct: 295 ADVPGPGAAADAAVSTVTWASGAVPPAELCVVGDADQSIYAFRGANIRNIVEFEEDFP-- 352

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I L  ++RST  IL+  + V +     +     S                
Sbjct: 353 ------DAAVILLEQNYRSTQTILSAANAVIARNNQRKAKRLWS---------------- 390

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                          + ++       +   +       A  +A  +  +           
Sbjct: 391 ------------DAGDGEKIVGFVADNEHDE-------AAFVAEEVDRLTDAG------- 424

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             + +  D+ V  R    + +   +         +           +   I+DL+A  R 
Sbjct: 425 --LARPADVAVFYRTNAQSRVFEEIF----VRVGLPYRVVGGVRFYERREIRDLLAYLRV 478

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISK 480
           + +  D ++   +L  P     +     +          +    +        A      
Sbjct: 479 LANPNDTVNLRRILNVPRRGIGDRAEAALAGFAEVERIGFAAALERVGEVPGIATRSAKA 538

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537
            +     + EL    +   P      +L       + ++    E     + L E +    
Sbjct: 539 VREFAALLAELRA-IEADGPVAVVEAVLERTGYLSELLAEDTVEAQGRVENLQELVGVVQ 597

Query: 538 RN-EQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGS 595
              E+N   +L E + ++       +       +  V +MT+H+AKGLE PVVFL     
Sbjct: 598 EFTERNPQGTLAEFLEQVSLVADADQVPTDDGSDGVVTLMTLHSAKGLEFPVVFLTGLED 657

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            VF H                                            EE  RL YVG+
Sbjct: 658 GVFPHLRTLGDPT----------------------------------QLEEERRLAYVGV 683

Query: 656 TRASDQLIIC-KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           TRA  +L +      ++  + +       +        +  + ++         W     
Sbjct: 684 TRARSRLYLTRSVVRSAWGQPAYNPPSRFLGEVPDALVDWRRLVEAAPEPAARPWGGSGG 743

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
           S      +      +  Q                 +        PS          + + 
Sbjct: 744 SGPGGFGSGGFGSGSAGQGAGRAGGGSAPARKPLPNSPFAGRGRPSARPVLELRQGDRVT 803

Query: 775 SD 776
            D
Sbjct: 804 HD 805


>gi|119964140|ref|YP_948452.1| UvrD/REP helicase [Arthrobacter aurescens TC1]
 gi|119950999|gb|ABM09910.1| UvrD/REP helicase [Arthrobacter aurescens TC1]
          Length = 1167

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 144/1050 (13%), Positives = 259/1050 (24%), Gaps = 177/1050 (16%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI--NKKSPDL 96
            +  G    +      Q       + E +      F   K T    +I       +   D 
Sbjct: 153  LRLGIERDVVLLGGAQSWQLASEVVEAYDGEYQHFTAAKSTLVTAVIQLAGECAEHLQDP 212

Query: 97   KEKLKKSQDEFIKIRD-------RFNTYKMFKSTLASLTL---AKYLNAHYEEAKKKNCV 146
             E      +      +       + N  +      A L        +   Y+EAK++  V
Sbjct: 213  GEVRDWVLERVQTFEELPYVAGAKKNPTQAAGELAAMLRTRGSVADMVVRYQEAKRQRGV 272

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            LDF DL+     +     ++A            +L+DE QDTS  Q  +   L       
Sbjct: 273  LDFGDLVALAARIASDIPLAATT---ERARYKVVLLDEFQDTSHAQLVLFSRLFGQ---- 325

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII------EL 260
                     + AVGD  QSIY F GA   ++    +    R  +               L
Sbjct: 326  ------GHAVTAVGDPNQSIYGFRGASAGQLFHFVQEFPVRHADHSGDNESYSVAPTSYL 379

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              ++R+  +IL   + + +          +        +      G V +   V S    
Sbjct: 380  TTAWRNGRNILQAANTIAA--------PLNRAAASEGPAGDRKTAGNVSVPALVPSPAAV 431

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              +     + +  D           A  IA  +       T+F   K        + VL 
Sbjct: 432  DGSVVIGRFGTDEDE----------ATAIARDVRRY--QRTVFEEEKDGTPVKPTMAVLC 479

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R+R          R       I         L D   I DL+A  R +       + + +
Sbjct: 480  RRRAQM----ECLRREFELQGIPYEIVGLGGLLDTPEIVDLVATLRVLADPGRSDALMRL 535

Query: 441  LKSPLFNFSEDDIF---KICTQRHETETVYEYIQKFANCGISKF---------------- 481
            L    +     D+              +  E   +  +                      
Sbjct: 536  LAGARWRIGPADLMAFSDWSRFLARRRSAPEAHPESFDDNEEPAGVVVESDITDAASLVE 595

Query: 482  -------------------QHVIKYIHELIHIAQFCS------PHDFFTLILGAKKGRQQ 516
                                  +  +  L    +                +  A     +
Sbjct: 596  ALDFLPRPGWTSGHGRSLSAAALDRLTSLASELRSLRSYIGDDLTTLLGEVERAMLLDIE 655

Query: 517  FISRFG---NEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPT----IKRAHSAN 568
              ++ G   ++    LD F +      Q S    L   +S LE                N
Sbjct: 656  VAAKPGISIHQARRNLDAFQDAAAGFLQTSQRIDLLAFLSWLEAAASEEGGLDVAPVETN 715

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDDPGIPIWI 622
               V+++TVH +KGLE  VVF+    +  F      +          P   D   +P W 
Sbjct: 716  REAVQLLTVHASKGLEWDVVFVPGLNAGSFPSNRDSRWSTGAAALPWPLRGDRADLPQWD 775

Query: 623  PQSKSRNNIVSD---LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                 +   +         ++   + E  RL YV  TRA   L     +   +       
Sbjct: 776  LDQPDQKGWLDAEKDFKSEVQHHGEAEERRLAYVAYTRAKFVLWASSAAWNGSRSGMAGM 835

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
            + +            V+             I  E                ++        
Sbjct: 836  SAFLSELAPLAAVAAVEDGAARMQSLASAVIHAESVAEEALPEESPLTAALEVAQFPYDP 895

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN---RGLI----------- 785
             +    P             S +D         +       +    G+            
Sbjct: 896  LEGPSDPRTGARLRLTPGRRSAMDRAAALVRGYIEEPGHAPSNDLTGVAGKWSQEAELLL 955

Query: 786  -----------IH------------------KLLQVI----FTLP--EHKRKNFITSYCT 810
                       +H                   +L  +       P    ++     ++  
Sbjct: 956  DRQRQAKTVQDVHLPSHISASLFVDLGADPAAVLSQLRRPVPREPGISARKGTAFHAWVE 1015

Query: 811  KNA---KLWPAKEYKNLLLSITRLLENPMMTTAMSCDS---YSEVSVSGKINCPKKDIII 864
            +      +    E       I           A         +   V   +     D+++
Sbjct: 1016 EYFGTTGMLDLDEAPGSDSHIDEAYGLDDTVAAFKKSEWAQRAPAFVEVPVETRIGDVVV 1075

Query: 865  SGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLV 921
             GRID +         + ++KT      +   I      QL++Y          P + + 
Sbjct: 1076 RGRIDAVFRDADGRWQLIDWKTGRRPAGQQLAIR---AVQLAVYRLAWARLKDVPLEDVS 1132

Query: 922  CLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                YV++  V         +    I  K 
Sbjct: 1133 AAFYYVADDAVVRPHDLGSAEELELIVAKA 1162


>gi|188585100|ref|YP_001916645.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349787|gb|ACB84057.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 726

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/639 (17%), Positives = 203/639 (31%), Gaps = 123/639 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM------FKSTLASLTLAKYLNA 135
           K+ +  +   K+  +K+ L     +  K   +    K+       +           +  
Sbjct: 108 KDFLIYDTRDKTKIVKDLLADFNLDKKKYPHQAVAKKISGVKNNLQDPRELFYPYDEVFE 167

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  KK   LDF+DL++ T  L ++             +  +IL+DE QDT+  Q  +
Sbjct: 168 AYQKRLKKENALDFDDLLLLTLRLFEQYPDR---LQYYQNKFQYILVDEFQDTNPAQNRL 224

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I  L+               +F VGD+ QSIY F GA+ K +L  ++             
Sbjct: 225 ISLLS----------PPQDNVFVVGDDDQSIYLFRGADVKNILEFEKTYPN--------A 266

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            + +L  ++RS+  IL   ++V +   + +                       +LW    
Sbjct: 267 QVYKLEKNYRSSKTILEAANQVVTNNPSRKSK---------------------ELW---- 301

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                        +    D   +       A  IA  I                  Q   
Sbjct: 302 ---TDNDEGYPLQYYEADDERDE-------AYFIAEEIRA-------------NRYQLPL 338

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           I VL R    + ++  + R       IS          D   +KD+MA    +   + D 
Sbjct: 339 IAVLYRTNAQSRVLEDIFR----KMGISYEVVGGTGFYDRKEVKDIMAYLMVVQCPQSDS 394

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK-----FQHVIKYIH 489
               ++  P     +  + K+         T+++ + +     ISK      +     I 
Sbjct: 395 QLERIINEPKRGIGKTSVDKLKDYANRNNITLFDALLEVDYTDISKRGKNSVKKFTDMIG 454

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSS 546
               + ++ +  +    +       +   S+   E     + + E  +     E     +
Sbjct: 455 NFRKMREYLTVRELIEEVAEKSGYLEALRSQNTKEAETRMENVREIYSMAKEFEAEGGET 514

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           LQE ++                  +V +MT+H+AKGLE P VFL      VF H      
Sbjct: 515 LQEFLTHSTLMGDIDTWE-DEEQAQVVMMTLHSAKGLEFPGVFLTGLEEGVFPH------ 567

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                       +  +  +++ EE  RL YVG+TRA   L +  
Sbjct: 568 ----------------------------IRTYDSEASMEEERRLCYVGITRAEQVLYLTW 599

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
               +    +        V +   + +  +   L+    
Sbjct: 600 ARERTLNGMTRMLQPSRFVSEIGEDLKDTQHQTLSGQGQ 638


>gi|89074458|ref|ZP_01160935.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
 gi|89049746|gb|EAR55296.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
          Length = 723

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 177/549 (32%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++ + +LL+       IR        HIL+DE QDT+ I
Sbjct: 172 RIYTAYQEACDRAGMVDFAELLLRSYELLRDN---KHIREHYQARFKHILVDEFQDTNSI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + R            
Sbjct: 229 QFAWLRLMAG----------PDCHVMIVGDDDQSIYGWRGAKIENIQRFLNEF------- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +  S I L  ++RST +IL   +++ +      G                       LW
Sbjct: 272 -KGASSIFLEQNYRSTGNILNAANELIANNNERMGKK---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S F+ + +       AR     I                  
Sbjct: 310 -------TDGGEGEPISLYSAFNEIDE-------ARFAVGKIKEWRDQGGSL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +   L R    + ++            +           +   IKD ++  R I ++
Sbjct: 348 --NETAFLYRSNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD SF  ++ +P     +  +  I    R    T+++                +  +  
Sbjct: 402 NDDASFERVVNTPTRGLGDRTLETIRLVARDRGLTMWQSSIALLEEQVLAGRAANSLRRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE- 540
           I+ I+ L         +     ++     R  +    G +     + L+E +  T + E 
Sbjct: 462 IELINALEDDTADLPMYQQTDEVIRHSGLRAMYEQEKGEKAQARIENLEELVTATRQFEI 521

Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            + + S                        + V++MT+H+AKGLE PVVF+V     +F 
Sbjct: 522 PEEAESMTPLAAFLAHAALEAGDGQADDFEDAVQLMTMHSAKGLEFPVVFMVGVEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                   +    EE  RL YVGMTRA 
Sbjct: 582 SSRTT----------------------------------EEVGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 608 QKLYITYAE 616


>gi|256397096|ref|YP_003118660.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM
           44928]
 gi|256363322|gb|ACU76819.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM
           44928]
          Length = 806

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/622 (18%), Positives = 196/622 (31%), Gaps = 117/622 (18%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
              T A   LA+ +   Y +       LDF+D+I+ T  LL+       I     +   +
Sbjct: 216 RAQTEAERQLAQ-VYRLYADRLTAAKALDFDDIIMTTVHLLQ---AFPMIAEHYRRRFRN 271

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVG-----------KNTHSSPRTLFAVGDEKQSIYS 228
           IL+DE QDT+  Q+++++ L                        P  L  VGD  QSIY+
Sbjct: 272 ILVDEYQDTNTAQYQLVKELVGQHEKRTVDGDLVRPGLNTEDLPPAELCVVGDADQSIYA 331

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F GA  + ++  +R              +I+L  ++RST  ILT  + V    +  +  +
Sbjct: 332 FRGATIRNIIEFERDYP--------DAKVIKLEQNYRSTQTILTAANAVIENNKGRRAKN 383

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW           + +  +     D   +       A+ 
Sbjct: 384 ---------------------LW-------TDSGDGKLITGYVADDEHSE-------AQF 408

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I  +                   + V  R    + +   +         +      
Sbjct: 409 VAEEIDRLSDAKET---------TYGGVAVFYRTNAQSRVFEEVF----VRVGLPYRVVG 455

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                +   ++D +A  R + +++D +S   +L +P     E     +      E  T  
Sbjct: 456 GVRFYERKEVRDALAYLRALANEDDIVSVRRVLNTPKRGIGEKAEESLERLSARERITFG 515

Query: 468 EYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           + +++       A   +   Q   + + EL  +A    P      IL      Q+     
Sbjct: 516 DALRRADEAPGLAARSVKAVQGFTQMMDELREMAAEYGPAHVLEAILERTGLLQELQDSD 575

Query: 522 GNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNE-VRIMT 576
             +    I+ L E L   L  EQ      L E +  +     + +     +H   V +MT
Sbjct: 576 DPQDETRIENLRELLAVALEFEQGQPEGRLPEFLERVALVADSDQIPDGEDHEGMVTLMT 635

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE PVVFL      VF H                                  + 
Sbjct: 636 LHSAKGLEFPVVFLTGMEDGVFPH----------------------------------MR 661

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
               K   EE  RL YVG+TRA +QL + +    S             + +        +
Sbjct: 662 SMGDKKEMEEERRLAYVGITRAREQLYVSRSVYRSAWGAPQYNPPSKFLGEIPEPLVEWE 721

Query: 697 KIKLTNSINKDEWIAYEWSTHH 718
           +        +         T  
Sbjct: 722 RTAPEPKTGERSPFGDRRGTSR 743


>gi|89076421|ref|ZP_01162746.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34]
 gi|89047889|gb|EAR53482.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34]
          Length = 1203

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 143/862 (16%), Positives = 281/862 (32%), Gaps = 138/862 (16%)

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            +AK     L F+DL+      +   D    +  KI  +    +IDE QDT  +Q+ +  S
Sbjct: 345  QAKAHKGWLSFDDLLTQLGAAI-DNDQDDLLASKIRSQYPVAMIDEFQDTDPLQYGIFSS 403

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +  D             LF +GD KQ+IY+F GA+    ++ +R  Q   T         
Sbjct: 404  VYND--------HPECGLFMIGDPKQAIYAFRGADIFTYIQARRQVQDHYT--------- 446

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSSRIGQVGTVQLWEQVVSQ 317
             L  ++RSTAD++  V+ VF  P +     +D +   + H      +      W      
Sbjct: 447  -LGTNWRSTADMIASVNSVFDTPNSPFIYDQDITFDPVGHSPKAPDRS-----WWL---- 496

Query: 318  HDSQCNPQQESWTSYF---DSLPQESSASILARRIAYTISNMIG-----TDTIFSNGKKR 369
             + +  P    W         + +    S +A   A  I +++               + 
Sbjct: 497  -NDEQQPAITFWLQDSLDGKPITKGDYESTMATATAAQIQHILEQSQQGQGYFLDKEAQH 555

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +QA DI VLVR  ++  L+      L      SV  ++R  +       D+  L + +L
Sbjct: 556  PVQAGDIAVLVRTGREGKLVRE---ALAKQGIASVYLSNRDSVFSTAEAADVQRLLQAVL 612

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
            + +DD +    L S LF+ +  ++  +    +E E      +++    +   + V+  + 
Sbjct: 613  TPDDDRALRAALASGLFSLTAIELDTLNNDENEWEVAVNSFKQYRQQWLK--RGVMPMLR 670

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
             ++              +L  + G ++            + E L    +   + Y+ L+ 
Sbjct: 671  SVMAKNN------IAERLLVEEGGERRLTDLL------HIGELLQEASQTLDSDYALLRW 718

Query: 550  LISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            L   + +             +  N V+I+T+H +KGLE  +VF+    S     +   K 
Sbjct: 719  LAENVAEPNGNSDEQILRLESERNLVQIVTIHKSKGLEYDLVFMPFVCSY---REVDSKG 775

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-C 665
             +     DD    + I +        +D I    K    E  RL+YV +TRA     +  
Sbjct: 776  EVKYHDEDDNVTVLDITK-------HADSISKADKERLAEDLRLIYVALTRAVYSCFVGM 828

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDER-------------VKKIKLTNSINKDEWIAY 712
                     K         +     N E               +                
Sbjct: 829  APVRNGRSSKEPTGLHKSAMGYLIQNGEECGVAALELALAKLSEAQPTITIAEPPVLPVD 888

Query: 713  EWSTHHPENTPLEREETIKQL--------------MDEQKIPKKLFSPIKNDINEPYILN 758
            +W+  + +   L R E  +Q+                 Q            DI+      
Sbjct: 889  KWAGQNEQTDALNRREFERQIERNWWMTSYSNLVKQGHQAHHDSSLDLPGFDIDSVQKET 948

Query: 759  PSTIDTKGKTNLE-SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT----KNA 813
            P   +T+ +   E S+ +  +    G  +H + + I           +         ++ 
Sbjct: 949  PENSETEVELEPEYSIYTFPRGARPGTFLHTVFEEIEFTRPVDSPETVAKLTELLQLEHY 1008

Query: 814  KLWPAKEYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSVSGKINCPKKDII------- 863
            +L      + L+  +    L+     +   +     +E+     I   +  ++       
Sbjct: 1009 ELAWLTVLQQLINDVLHCPLDGEQLRLAEKIPQQRLTEMEFLIPIEMLQSPLLNKVIVKH 1068

Query: 864  ------------------ISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPY--- 898
                              + G ID +   Q   ++ ++K+++          E +     
Sbjct: 1069 DSISAKAGELGFSTVSGMLKGFIDLVFEHQGKYYVLDWKSNYLGDDPQVYRGEQLVEAMR 1128

Query: 899  --THIAQLSIYEKILKDSYPNK 918
               +  Q  IY   L+    ++
Sbjct: 1129 DHRYDLQYQIYALALQRFLRSR 1150


>gi|304396685|ref|ZP_07378565.1| exodeoxyribonuclease V, beta subunit [Pantoea sp. aB]
 gi|304355481|gb|EFM19848.1| exodeoxyribonuclease V, beta subunit [Pantoea sp. aB]
          Length = 1179

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 130/906 (14%), Positives = 279/906 (30%), Gaps = 127/906 (14%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKL----KKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                 +   + +E+ +    + ++     +  +    +  D+F    +    +       
Sbjct: 274  ASSETRDYQLPKELERFGQQVLDEKTKKGEAPRHSLFEAVDQFLAEPLSLRDVIIAQALT 333

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             + A  +  K+   +L F+DL+   ++ L++      +   I       LIDE QDT   
Sbjct: 334  DVRATVQREKRLRALLGFDDLLSKLDEALQQPG-GVLLAETIRARFPVALIDEFQDTDPQ 392

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+ + R+L          +   + LF +GD KQ+IY+F GA+    LR +       T  
Sbjct: 393  QYRIFRTLY--------INQPEQALFLIGDPKQAIYAFRGADIFTYLRARNEVSAHYT-- 442

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                    L  ++RS+ +++  V+++FS  ++    S      +   +            
Sbjct: 443  --------LDTNWRSSPEMVESVNRLFSQIDSPFLFSAIPFQPVMPAAPNQS-------- 486

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNG 366
              +    D Q  P    W    + +        +A++ A  IS  +         +    
Sbjct: 487  --LKLIFDEQQQPALRFWLQPGEGVGNSDYQQFMAQQCAADISRWLVAGQQGRACLGKGD 544

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              + ++A DI VLVR R +  LI      L      SV  + R  +      ++L+ L +
Sbjct: 545  ALQPVRASDITVLVRSRNEAGLIRDALNALSIP---SVYLSSRDSVYTTPEARELLWLLQ 601

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             I + E +      L + +F      +  +     E + + E            +Q +  
Sbjct: 602  AIQAPEQERLLRSALATSIFAIDAATLDALTQNEREWDALVEQFAV--------WQQLWH 653

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNS 543
                L  +            +L ++ G ++            L E L      L +    
Sbjct: 654  QRGVLPMLRDVMIKRQLAENMLASENGERRLTDLM------HLGELLQEASVQLESPHAL 707

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               L + I+       + +    ++ + V+I+T+H +KGL+ P+V+L        +   +
Sbjct: 708  VRFLAQQIARPNSQAASQQLRLESDRHLVQIVTIHKSKGLQYPLVWLPFAAGFREAASAL 767

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL- 662
                       D                 +  +   ++    E  RLLYV +TR+     
Sbjct: 768  YHDRDNFMALLDVQGD-------------AQSLALAEEERLAEDLRLLYVALTRSIYHCS 814

Query: 663  -----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDE------------RVKKIKLTNSIN 705
                 +I        E   ++     +V      D                 +   + + 
Sbjct: 815  VGIAPLIKGTRKKEGESDLHKSALGYLVQQGEAADAQQLSQKLNALTGEGIALVEADLMP 874

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
             + W   E       +  + R       +      ++  S    D    + ++ +  D  
Sbjct: 875  GERWQDAEQGDEVLSSRDVTRALADAWRVTSYSGLQQHHSSSLLDALPNFDIDAAGEDES 934

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
            G+    +     +    G  +H L + I       R                    +  +
Sbjct: 935  GEEAALTPHHFPRGAAPGTFLHGLFESIDFTELPDRVWLEDQLQHNGYPSDWLPVLEQWI 994

Query: 826  LSITRL-LENP--MMTTAMSCDSYSEVSV--------------------------SGKIN 856
              +    L      ++   S +   E+                            +  ++
Sbjct: 995  ERVLHTPLNAEGLTLSAIKSSERLIEMEFYLPINNLLTAADLDDLLRQHDSLSLQAAPLD 1054

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIY 907
              +   ++ G ID +   Q   ++ +YK++        + P           +  Q  +Y
Sbjct: 1055 FRQVRGMLKGFIDLVFRWQGKYYLLDYKSNWLGDSHAAYTPEAMAQAMIGHRYDLQYQLY 1114

Query: 908  EKILKD 913
               L  
Sbjct: 1115 TLALHR 1120


>gi|218193239|gb|EEC75666.1| hypothetical protein OsI_12457 [Oryza sativa Indica Group]
          Length = 963

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 133/967 (13%), Positives = 294/967 (30%), Gaps = 137/967 (14%)

Query: 14  ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
           E I   +  +     +      +L  ++G       ++ L                    
Sbjct: 4   EQIVARIDAIKAQWRAAAGDLEALIAQSGVDKRSYSSKHLPNWLNKVGEWSGQETQDYQL 63

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
             +    +++++ ++  K  P         +       D      +    L        +
Sbjct: 64  PKELDKFRQSVLLEKTKKGEPP--------RHALFTAIDELFDEPLTLRDLIMARALSEI 115

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
               ++ K++   L F+DL+   +  L+       +   I Q     +IDE QDT   Q+
Sbjct: 116 RTSIQQEKRQRAELGFDDLLSRLDSALQ-SGGGEQLAQAIRQRYPVAMIDEFQDTDPQQY 174

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            + + L                L  +GD KQ+IY+F GA+    +R +       T    
Sbjct: 175 RIFQKLY--------VGRPDCGLLLIGDPKQAIYAFRGADIFTYMRARSEVSAHYT---- 222

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                 L  ++RS+  ++  V+ +FS  E  +         I   ++   Q    +L   
Sbjct: 223 ------LETNWRSSPSMVASVNHLFSQVE--KPFLFGQIPFIEVNAAEKNQGLAFELH-- 272

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKK 368
                  +  P  + W    +         ++AR  A  I + +         + S    
Sbjct: 273 ------GKPQPAMQFWLQQGEGAGVSGYQQLMARLCATQIRDWLSAGQQGLARLQSGKAS 326

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           R +QA DI VLVR R +  L+      L      SV  ++R  + D    KDL+ L + +
Sbjct: 327 RPVQASDITVLVRSRNEAALVRDALSALSIP---SVYLSNRDSVFDTPEAKDLLWLLQAV 383

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           L+ E + +    + + L       +  +       E  ++ +    +   + +       
Sbjct: 384 LAPEQERTLRSAMATGLMGLDAPTLDGL----SRDERAWDALVNEFDNYRTLWLRR---- 435

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYS 545
             L  +++          +L +  G ++            L E L      L +E     
Sbjct: 436 GVLPMLSEVMKARHLAENLLASAGGERRLTDVL------HLGELLQEAAAQLDSEHALVR 489

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L + I++  +     +    ++ + V+++T+H +KGLE  +V+L   G+     + +  
Sbjct: 490 WLAQQIAQPNRQSDNQQLRLESDRHLVQVITIHKSKGLEFDLVWLPFVGNFRQQQQALYH 549

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                             Q+    +   +     ++    E  RLLYV +TR+     I 
Sbjct: 550 DR-------------HSFQALLDLDADEESQAWAEEERLAEDLRLLYVALTRSVYHCSIG 596

Query: 666 ------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
                        +   ++     +V      D    + +L   +     ++        
Sbjct: 597 IAPLFQGTRKKQGDTDLHRSALGYLVQGGQPGDAVYLQERLQQLVGGGIALSLVEPPDAE 656

Query: 720 ENTPLE-REETIKQLMDEQKIPKKLF-----------SPIKNDINEPYILNPSTIDTKGK 767
              P     E +      ++I                + +  D+     ++ +    +  
Sbjct: 657 PWQPQASLAEALAAKSFTRRIQDFWRVTSYTGLQQHGASLMQDLLPRLDVDAAGERGEES 716

Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
               +  +  +    G  +H L + +        +  +        + +       LL  
Sbjct: 717 EPALTPHTFPRGATPGTFLHSLFETLDFTQPLDEQWLLE---QLQQQGFAEHWQPILLAW 773

Query: 828 ITRLLENPM------MTTAMSCDSYSEVSVSGK--------------------------I 855
           +  LL  P+      +         +E+                               +
Sbjct: 774 MQVLLNTPLDDSGVTLAALTPQHKQAELQFYLPINRLLQAKELDALVKRYDPLSARCPAL 833

Query: 856 NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSI 906
           +  +   ++ G ID +   Q   ++ +YK++        +           + +  Q  +
Sbjct: 834 DFHQVQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTRPAMEQAMAEHRYDLQYQL 893

Query: 907 YEKILKD 913
           Y   L  
Sbjct: 894 YTLALHR 900


>gi|261365097|ref|ZP_05977980.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996]
 gi|288566523|gb|EFC88083.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996]
          Length = 666

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 205/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE L K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 126 KEALFKAQHQISLWKNDLKTPEDVLQTASNAWEEQIARVYASYQETLQSYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV             S              G  ++ + V  Q++               
Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 317

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                      A  +   I    ++G D           Q  D  VL R      +    
Sbjct: 318 --------QHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      ++    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 361 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +   
Sbjct: 417 LGKLNTYAHEHECSLYEAAQTEEALALLNNTNRQHLQAFMDMFGSYRAKAETSEAGELIN 476

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + +   +  R  + +  ++ EL   +       
Sbjct: 477 SLLKEIDYENHLLASEEGKAGEIKWRNVSDLTGWLERKGEQNGKNIIELAQTVALMTLLE 536

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V++ T+H +KGLE P VFLV     +  H                     
Sbjct: 537 GK-SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 575

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 620

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 621 SRFIDEMPQED 631


>gi|170765721|ref|ZP_02900532.1| exodeoxyribonuclease V, beta subunit [Escherichia albertii TW07627]
 gi|170124867|gb|EDS93798.1| exodeoxyribonuclease V, beta subunit [Escherichia albertii TW07627]
          Length = 1180

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 134/973 (13%), Positives = 301/973 (30%), Gaps = 136/973 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSL--SMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +E+    +  +              V    ++   +    +K     QA     I     
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAE 274

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
              ++ +  Q   P +    + +  ++    E     +    +  D+     +    L   
Sbjct: 275  EETNSY--QLPEPLEKFSQRFLEDRTKAGGE---TPRHPLFEAVDQLLAEPLSIRDLVIT 329

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                 +       K++   L F+D++   +  L+  +    +   I       +IDE QD
Sbjct: 330  RALAEIRETVASEKRRRGELGFDDMLSRLDSALR-SESGEALASAIRARFPVAMIDEFQD 388

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T   Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +      
Sbjct: 389  TDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 440

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
             T          L  ++RS   ++  V+K+FS  ++A    E     ++           
Sbjct: 441  YT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALH-- 488

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362
                         +  P  + W    ++   +   S +A+  A  I + +         +
Sbjct: 489  --------FVFKGETQPAMKMWLMEGENCGVDDYQSTMAQVCAAQIRDWLQAGQRGEALL 540

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
             +    R ++A DI VLVR R++   +      L      SV  ++R  + + L  ++++
Sbjct: 541  MNGDAARPVRASDISVLVRSRQEAAQVRDALTLLDIP---SVYLSNRDSVFETLEAQEML 597

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L + +++ E + +    L + +   +  DI  +           E+           ++
Sbjct: 598  WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYR 649

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539
             + +    +  +    S  +    +L    G ++            + E L      L +
Sbjct: 650  QIWRKRGVMPMLRTLMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLES 703

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            E      L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +    
Sbjct: 704  EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRIQ 763

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             +                      ++    N   + +   +     E  RLLYV +TR+ 
Sbjct: 764  DQAFYHDR-------------HSFEAVLDLNEAPESVDLAEAERLAEDLRLLYVALTRSV 810

Query: 660  DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                L +        ++K         +       E +    L   I         W T 
Sbjct: 811  WHCSLGVAPLVRRRGDRKGPTDVHQSALGRLLQKGEPLDAAGLRACIEALCDEDIAWQTA 870

Query: 718  HPENTPLEREETIKQLM------DEQKIPKKLFSPI----------KNDINEPYILNPST 761
               +    R  T+                    +              ++     ++ + 
Sbjct: 871  QIGDNQPWRVNTVSTAELNVKTLQRLPGDNWRVTSYSGLQQRGHGIAQELMPRLDVDAAG 930

Query: 762  IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
            I +  +    +     +  + G  +H L + +      +  N++          +  +  
Sbjct: 931  IASVVEEPTLTPHQFPRGASPGTFLHSLFENLDFTQPVE-PNWVREKLELGG--FEPQWE 987

Query: 822  KNLLLSITRLLENPM------MTTAMSCDSYSEVSV----SGKINCPKKDIIIS------ 865
              L   IT +L+ P+      ++   + D   E+      S  +   + D +I       
Sbjct: 988  PVLTEWITAILQAPLNESGVSLSQLSARDKQVEMEFYLLISEPLIASRLDALIRQFDPLS 1047

Query: 866  ----------------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTH 900
                            G ID +   +   ++ +YK++        +           + +
Sbjct: 1048 AGCPPLEFMQVCGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTRQAMAAAMQAHRY 1107

Query: 901  IAQLSIYEKILKD 913
              Q  +Y   L  
Sbjct: 1108 DLQYQLYTLALHR 1120


>gi|323183364|gb|EFZ68761.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 1357]
          Length = 1180

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDKQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQE---------IEHIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAEAMQAHRYDLQYQLYTLALHR 1120


>gi|331674305|ref|ZP_08375065.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA280]
 gi|331068399|gb|EGI39794.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA280]
          Length = 1183

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 132/971 (13%), Positives = 296/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 218  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 275

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 276  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 334

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 335  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 393

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 394  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 445

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 446  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 489

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 490  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 545

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 546  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 602

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 603  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 654

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S       +L    G ++            + E L      L +E 
Sbjct: 655  WRKRGVMPMLRALMSARKIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 708

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 709  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 768

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 769  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 815

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 816  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 875

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 876  GDNQPWQVNDAITAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 935

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          + ++    
Sbjct: 936  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 992

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      ++   + D   E+     I+ P                   
Sbjct: 993  LTEWITAVLQAPLNETGVSLSQLSARDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1052

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1053 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1112

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1113 QYQLYTLALHR 1123


>gi|311744700|ref|ZP_07718497.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272]
 gi|311312009|gb|EFQ81929.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272]
          Length = 774

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/618 (16%), Positives = 183/618 (29%), Gaps = 132/618 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y+        +DF+DLI+NT  L +       +     +   H+L+DE QD
Sbjct: 190 ELYAEAYGTYQRRLIAANAMDFDDLIMNTVHLFQAFPA---VAESYRRRFRHVLVDEYQD 246

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +IR L +              L  VGD  QSIY+F GA  + +L  +      
Sbjct: 247 TNHAQYSLIRELCD----------PESDLLVVGDSDQSIYAFRGASIRNILEFEDDFP-- 294

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL+  + V S  E     +  S                
Sbjct: 295 ------DARTILLEQNYRSTQTILSAANAVISRNEGRPEKNLWS---------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       ++   ++       D   +       A+ IA  I  +         G 
Sbjct: 333 ------------AEGEGEKIVGYVADDERDE-------AQFIADEIDTLTDDGAATPAG- 372

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                   + V  R    + +   +         +           +   ++D +A  R 
Sbjct: 373 --------VAVFYRTNAQSRIFEEVF----IRVGLPYRVVGGVRFYERKEVRDALAYLRA 420

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISK 480
           +++  D +S   ++  P     +     +      E  + +E +++       A    + 
Sbjct: 421 LVNPRDTVSMRRIVNEPKRGIGDRAEASLEVFAAREGVSFWEAMRRCDEVADLATRSRTA 480

Query: 481 FQHVIKYIHELIHIAQFCSPHD-FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                  + EL+ +A+  +P D      L               +    ++ L E +   
Sbjct: 481 VAGFAGTMAELMELAESGAPADQVLEAALTRSGYLAALEKSDDPQDESRVENLAELVAVA 540

Query: 537 LRN-----------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                                  +  SL   +  +            +    V +MT+HT
Sbjct: 541 REFVTAAATVDDDAPADPDDVDLTPGSLAAFLERVSLVADADSI-PDSGDGVVTLMTLHT 599

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFL      +F H                                       
Sbjct: 600 AKGLEFPVVFLTGLEDGIFPHMRSMGDP-------------------------------- 627

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +   E  RL YVG+TRA ++L + + ++ S     +       V +   +    ++  
Sbjct: 628 --AELAEERRLAYVGITRARERLYLTRATSRSAWGAPSYNPASRFVEEVPDHLVDWRREA 685

Query: 700 LTNSINKDEWIAYEWSTH 717
              +       +      
Sbjct: 686 SPPTQWMPSTPSVTARAQ 703


>gi|238892413|ref|YP_002917147.1| DNA-dependent helicase II [Klebsiella pneumoniae NTUH-K2044]
 gi|238544729|dbj|BAH61080.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 722

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/553 (18%), Positives = 179/553 (32%), Gaps = 116/553 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 173 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 230 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 274

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 275 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 311 W-------TDGADGEPISLYCAFNDLDE-------ARFVVNRIKTWQENGGALEQ----- 351

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 352 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++       A    S  Q 
Sbjct: 403 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQR 462

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 463 FMELIDALAQETTDMPLHVQTDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFS 522

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 523 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMF 582

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 583 PSQMALDEGG----------------------------------RLEEERRLAYVGVTRA 608

Query: 659 SDQLIICKHSNTS 671
             +L +       
Sbjct: 609 MQKLTLTYAETRR 621


>gi|261342239|ref|ZP_05970097.1| exodeoxyribonuclease V, beta subunit [Enterobacter cancerogenus ATCC
            35316]
 gi|288315575|gb|EFC54513.1| exodeoxyribonuclease V, beta subunit [Enterobacter cancerogenus ATCC
            35316]
          Length = 1180

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 125/903 (13%), Positives = 286/903 (31%), Gaps = 142/903 (15%)

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA---------SLTLAKYLNAHYEE 139
            +        ++    + +   I      +   ++ LA                +      
Sbjct: 282  LPDALEKFSQRFLAERTKADGIVPEHPLFVSIEALLAEPLSLNDLIITRAMAEIRDAVAR 341

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K++   L F+D++   ++ L+  +    + + I       +IDE QDT   Q+ + R +
Sbjct: 342  EKRRRGELGFDDMLSRLDEALR-SENGEALAHAIRTRFPVAMIDEFQDTDPQQYRIFRRI 400

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                            L  +GD KQ+IY+F GA+    ++ +   +   T          
Sbjct: 401  WR--------QQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVEAHYT---------- 442

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  ++RS+  ++  V+ +F   + A    E     ++  S              +  +++
Sbjct: 443  LDTNWRSSPGMVESVNALFERMDAAFMFREIPFKPVKSASKNAD----------LRFEYN 492

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR-----VIQAK 374
                P    W    +        + +A+  A  I + +   +       +      ++A 
Sbjct: 493  GAVQPAMRFWLLDGEGYGVADYQTAMAQHCAAQIRDWLSAGSRGEALLWKGENATPVKAS 552

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            DI VLVR R++  LI      L      SV  ++R  + D L  ++++ L + +L+ E +
Sbjct: 553  DITVLVRSRQEAALIRDALTLLTIP---SVYLSNRDSVFDTLEAQEMLWLLQAVLAPERE 609

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH--VIKYIHELI 492
             +    L S +   +  DI  +    +  ET ++ +         ++Q   V+  + EL+
Sbjct: 610  STLRSALASSMLGLNARDIDAL----NNNETAWDEVVDEFVHYRERWQKRGVMAMLRELM 665

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQE 549
               +          +L    G ++            + E L      L +E      L +
Sbjct: 666  AQRR------IAENLLATAGGERRLTDIL------HISELLQEAGSQLESEHALVRWLSQ 713

Query: 550  LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
             I++      + +    ++ + V+I+T+H +KGLE P+V+L    +     +        
Sbjct: 714  QIADPNSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFIANYRVQDQAFYHDRET 773

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                           +    +     ++  +     E  RLLYV +TR+     +     
Sbjct: 774  FE-------------AVLDLSKAETSVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPL 820

Query: 670  TSNEKKSNQRTWYD------------------MVYDSFHNDERVKKIKLTNSINKDEWIA 711
                 +    T +                   +             + +    +   W  
Sbjct: 821  FRRRGEKTGETDFHLSALGRLIQRGEPKDAAGLRQCIESLCGDHIALHVPELPDNRRWHL 880

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
             E +       P+ R       +      ++    I  D+     ++ + +       + 
Sbjct: 881  PEQAEPDLNARPIVRTVADDWRVTSYSGLQQHGQSIAQDLMPKLDIDAAGVGEVPVEPVL 940

Query: 772  SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
            +     +  + G  +H L + +    +   + ++       +  + AK    L   +  +
Sbjct: 941  TPHQFPRGASPGTFLHSLFEEL-DFTQPVSEAWVEKML--QSGGYEAKWQPVLTEWVNAI 997

Query: 832  LENPM------MTTAMSCDSYSEVSVSGKINCPKK------------------------- 860
            L+ P+      ++   + D   E+     I  P +                         
Sbjct: 998  LQAPLTEEGISLSQLTAKDKQVEMEFYLPIASPLRAEALDALIREYDPLSAGCPPLNFRQ 1057

Query: 861  -DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKI 910
               ++ G ID +   Q   ++ +YK++        +             +  Q  +Y   
Sbjct: 1058 VQGMLKGFIDLVFRHQGRYYLLDYKSNWLGENSDAYTQQAMASAMQMHRYDLQYQLYTLA 1117

Query: 911  LKD 913
            L  
Sbjct: 1118 LHR 1120


>gi|238918094|ref|YP_002931608.1| DNA-dependent helicase II [Edwardsiella ictaluri 93-146]
 gi|238867662|gb|ACR67373.1| DNA helicase II, putative [Edwardsiella ictaluri 93-146]
          Length = 719

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/693 (16%), Positives = 213/693 (30%), Gaps = 131/693 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLAVENCSPFSIMAVTFTNKAAAEMRHRIEALIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    +   +   LK  +K    +  +   R         
Sbjct: 90  FHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +             +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 150 KDDGLRPQHIESYGNPVEQTWLRIYQAYQEACDRAGLVDFAELLLRAHELWLHKP---QI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                   N+IL+DE QDT+ IQ+  IR L  D             +  VGD+ QSIY +
Sbjct: 207 LEHYRARFNNILVDEFQDTNRIQYAWIRMLAGD----------SGRVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                  I L  ++RS+ +IL   + +    +   G   
Sbjct: 257 RGAQVENIQKFLDDFP--------GAQTIRLEQNYRSSGNILRAANALIENNDGRLGKK- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +       AR +
Sbjct: 308 --------------------LW-------TEDGEGEPISLYCAFNELDE-------ARFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                    K+  +L R    + ++                    
Sbjct: 334 VNRIKAWQDNGGAL----------KECAILYRSNAQSRVLEEAL----LQAATPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD +A  R + ++ DD +F  ++ +P+    +  +  +    R    T+++
Sbjct: 380 MRFFERQEIKDALAYLRLLSNRNDDAAFERVVNTPVRGIGDRTLDVVRQTARDRQLTLWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +             +  +  ++ I  L   +     H     ++     RQ +    G
Sbjct: 440 ATRALLQEQVFPGRAANALRRFLELIEALAQDSDDLPLHVQTDRVIRDSGLRQMYEQEKG 499

Query: 523 N---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
                 I+ L+E +  T +        L  L + L        +    A  + V++MT+H
Sbjct: 500 EKGQTRIENLEELVTATRQFSYEDDDELSPLQAFLSHAALESGEGQADAYQDAVQLMTLH 559

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE P VF+V     +F  +                                     
Sbjct: 560 SAKGLEFPQVFIVGMEEGMFPSQMSLDEGG------------------------------ 589

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                 EE  RL YVG+TRA  +L +    +  
Sbjct: 590 ----RLEEERRLAYVGVTRAMRKLTLTYAESRR 618


>gi|330890591|gb|EGH23252.1| DNA-dependent helicase II [Pseudomonas syringae pv. mori str.
           301020]
          Length = 727

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 119/661 (18%), Positives = 216/661 (32%), Gaps = 124/661 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L   F       Q+ ++ + + +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LVQTFQILDSDDQQRLVKRVMRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    LT  K +   YE A ++  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPKHIQASGDLFLTTMKSVYEAYEVACQRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                 +I L  ++RSTA IL   + +     
Sbjct: 252 DQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASILKAANGLIVNNS 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDVGDGELINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           I   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P  +  E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARSIGEKTVEAIREHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++             +     I+ I  L         H     ++       
Sbjct: 435 ADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLSAKVMEMPLHLMTQTVIEQSGLIT 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHN 570
             +Q     G   ++ L+E ++     E +     L  L + L              + +
Sbjct: 495 YHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASLEAGDTQAQEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YVG+TRA  QL++                    V +   
Sbjct: 593 ------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIPP 640

Query: 691 N 691
            
Sbjct: 641 A 641


>gi|241205526|ref|YP_002976622.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859416|gb|ACS57083.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 826

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/597 (17%), Positives = 181/597 (30%), Gaps = 108/597 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+         DF DL+++   + +K      +  +      +IL+DE QDT+ 
Sbjct: 223 RDLYFAYQARLTTLNACDFGDLLMHPIAIFRKNPD---LLKEYHGRFRYILVDEYQDTNT 279

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +            + +  VGD+ QSIY + GAE   +LR ++        
Sbjct: 280 AQYMWLRLLAQRP------KGELQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 328

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL     + +  E   G +  +                   
Sbjct: 329 ---GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDR----------------- 368

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                    S  +  +    + +DS  +       AR I   I  +     +        
Sbjct: 369 ---------SDPDDAKVQVHASWDSEEE-------ARAIGEEIEQLQRGKHLL------- 405

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D+ +LVR              L     ++          + L I+D MA  R +  
Sbjct: 406 ---NDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVAQ 458

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++ +P     +  +  +    R     +           +           
Sbjct: 459 SADDLAFERIVNTPKRGLGDTTVRALHDYARARDIPMLAAAADIIETDELKPKARKALFD 518

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           VI+       + +     +    IL        + +    E    L+         E   
Sbjct: 519 VIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSME--- 575

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S + +   LE     +    + N + V IMT+H+AKGLE   VFL      +F H+  
Sbjct: 576 --SFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRS 633

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                ++  EE  RL YVG+TRA  +  
Sbjct: 634 LD--------------------------------ESGRAGLEEERRLAYVGITRAKHRCH 661

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           I   SN               + +       V +++ +                   
Sbjct: 662 IWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAEP 718


>gi|113968817|ref|YP_732610.1| DNA-dependent helicase II [Shewanella sp. MR-4]
 gi|113883501|gb|ABI37553.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-4]
          Length = 722

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 189/551 (34%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     +     +   HIL+DE QDT+ IQ
Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L                +  VGD+ QSIY + GA+ + + R  R          
Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLRDFPT------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L  ++RS  +IL   + + +      G                      +LW 
Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERLGK---------------------ELW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + + +  S    F+ + +       AR I   I++                 
Sbjct: 310 ------TDEADGEPISLYCAFNEMDE-------ARFIVGRINDWYEKGG----------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            ++          +   IKD M   R I ++ 
Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +  T R +  T+++   +       A    S  +  +
Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQQELTLWQACLRLLDEKVLAGRAASAVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541
             I  L    Q  + +     ++ A   +  + +  G +     + L+E +      E  
Sbjct: 463 DLIVTLQEETQDMALYRMTDTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL + L        +    A  + V++MT+H+AKGLE  +VF+      +F  
Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                      +    +E  RL YVGMTRA +
Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 609 KLYITYAESRR 619


>gi|93569010|gb|ABF13475.1| helicase [Arcanobacterium pyogenes]
          Length = 868

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/739 (15%), Positives = 209/739 (28%), Gaps = 126/739 (17%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKS--TLA 125
           + S F          ++T    +++ D+K+  +KK       +++   T   F+      
Sbjct: 165 MRSTFTIYDSADSNRLMTMVAREENIDIKQFPVKKLLRRVSDLKNDMVTASAFEMRNLNP 224

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +     + Y+   K    +DF+DLI+ T +LLK   +   I     +   HIL+DE 
Sbjct: 225 EERVIAQAYSGYQRRLKAANAVDFDDLIMLTVNLLKDNPL---IAEHYRRRFRHILVDEY 281

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT++ Q+E+IR L      G  +      L  VGD  QSIY+F GA  + +   ++   
Sbjct: 282 QDTNVAQYELIRVLV-----GGESDEPHGELTVVGDADQSIYAFRGATIRNIQDFEQDFP 336

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                     + I L  ++RST +IL+  + V +     +                    
Sbjct: 337 N--------ATSILLEQNYRSTQNILSAANAVIANNLGRRPKR----------------- 371

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW       DS    +   + +         + S  A  +   I  +         
Sbjct: 372 ----LW------TDSGSGEKIVGYVA--------DAESDEASFVVEEIDQLRDKGFA--- 410

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                     + V  R    +  +  +         I           +   IKD +A  
Sbjct: 411 -------YGQVAVFYRTNAQSRALEEMF----VRSGIPYKVVGGTKFYERKEIKDAIAYL 459

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------ 478
           + + + +D +S   +L  P           +         +    +   A+         
Sbjct: 460 QAVANPDDTVSVRRILNEPRRGLGAKAEETVAAHAARYGISFGAALTDVAHPDDAASAGR 519

Query: 479 ----------SKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE--- 524
                     +     +  + E+   A     P D    I+               +   
Sbjct: 520 ATVGLQARSANAITDFVVMLEEIRAKAVAGAPPADILDEIMDRSGYLVSLQRSNDPQDEV 579

Query: 525 VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKG 582
            ++ L E  +        + +  L + + ++                 EV +MTVHTAKG
Sbjct: 580 RVENLAELHSVASDFSVVNEAGTLGDFLDQVSLVADSDQIPDEDGGEGEVVLMTVHTAKG 639

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVF+       F H                                          
Sbjct: 640 LEFPVVFVTGMEDGTFPHIRAMNAPEELEEERRL-------------------------- 673

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                    YV  TRA  +L I   + + ++  + Q        +    D  V +   ++
Sbjct: 674 --------AYVAFTRARQRLYIT-RAGSRSQWGAPQELPASRFLEEIPEDVIVWRRDESS 724

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                    +  S          +  +      +       F              PS  
Sbjct: 725 MQTLRNGSGWGGSRSSWGGARSGQTSSRYSQSWDDDDFAPAFGTAGATAANKGKFVPSKF 784

Query: 763 DTKGKTNLESLLSDNQTFN 781
             K         +      
Sbjct: 785 GAKSAPASGEADASKTRAE 803


>gi|26249249|ref|NP_755289.1| exonuclease V subunit beta [Escherichia coli CFT073]
 gi|26109656|gb|AAN81859.1|AE016765_261 Exodeoxyribonuclease V beta chain [Escherichia coli CFT073]
          Length = 1183

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/877 (14%), Positives = 275/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 309  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 368  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 420  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 470  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 520  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 580  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 637  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 689  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 743  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KKS+       +       E
Sbjct: 790  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGE 849

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 850  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSY 909

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 910  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      +      D   E+  
Sbjct: 970  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1026

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123


>gi|330827780|ref|YP_004390732.1| DNA helicase II [Aeromonas veronii B565]
 gi|328802916|gb|AEB48115.1| DNA helicase II [Aeromonas veronii B565]
          Length = 723

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/723 (14%), Positives = 228/723 (31%), Gaps = 132/723 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + +            
Sbjct: 30  GAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVIGDGVRGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  ++   L          ++    + + +   ++  LK    +      R         
Sbjct: 90  FHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLIRRVLKALNLDEKHWAPRAVMGYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +           + +   Y+E   ++ ++DF +L++  ++L   +     I
Sbjct: 150 KDEGLRPGDIDLYGDPVTRTYQQIYETYQETCDRSGLVDFAELLLRAHELWLNKPH---I 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    +IL+DE QDT+ IQ+  +R L  +             +  VGD+ QSIY +
Sbjct: 207 LEHYRDRFQNILVDEFQDTNGIQYAWLRMLAGN----------SGKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R     Q            I L  ++RSTA+IL   + V +      G   
Sbjct: 257 RGAKIENIQRFLTDYQ--------GAETIRLEQNYRSTANILKAANSVIANNAERLGK-- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW             +  S  + F+ + +       AR +
Sbjct: 307 -------------------ELW-------TEGAEGEPISLYAAFNEVDE-------ARFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              + +      +            D  +L R    + ++                    
Sbjct: 334 VGRLKDWKEKGGLL----------ADCAILYRSNAQSRVLEEALMQDAM----PYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IKD MA  R I ++ DD SF  ++ +P     +  +  +    R +   +++
Sbjct: 380 LRFFERQEIKDAMAYLRLINNRGDDASFERVVNTPTRGIGDRTLEILRGNARDQGLNLWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +   N         +  +  +  I  L         H    + +     +  +++  G
Sbjct: 440 SAKALLNDKVLTGRAGNAVRGFVDLIDALEEQVSLLPLHQQADIAIQNSGLKAMYLAEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    ++ LDE +    + ++ +    + +L + L        +       + V++MT+
Sbjct: 500 EKSQARVENLDELVTACRQYQRPDELEDMSDLSAFLAHAALESGENQADEYADAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+V LV     +F  +                                    
Sbjct: 560 HSAKGLEFPLVLLVGVEEGMFPSQQST--------------------------------- 586

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             +    EE  RL YVGMTRA ++L IC   +     +         + +         +
Sbjct: 587 -EESGRLEEERRLCYVGMTRAMEKLYICYAESRRIYGREMFHKPSRFIREMPAECLEEIR 645

Query: 698 IKL 700
           ++ 
Sbjct: 646 LRT 648


>gi|227888383|ref|ZP_04006188.1| exodeoxyribonuclease V [Escherichia coli 83972]
 gi|300980536|ref|ZP_07175062.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 45-1]
 gi|301049388|ref|ZP_07196352.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 185-1]
 gi|227834652|gb|EEJ45118.1| exodeoxyribonuclease V [Escherichia coli 83972]
 gi|300298830|gb|EFJ55215.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 185-1]
 gi|300409236|gb|EFJ92774.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 45-1]
 gi|307554813|gb|ADN47588.1| exodeoxyribonuclease V beta chain [Escherichia coli ABU 83972]
          Length = 1180

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/877 (14%), Positives = 275/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KKS+       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      +      D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|148826204|ref|YP_001290957.1| DNA-dependent helicase II [Haemophilus influenzae PittEE]
 gi|229846218|ref|ZP_04466330.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1]
 gi|148716364|gb|ABQ98574.1| DNA helicase II [Haemophilus influenzae PittEE]
 gi|229811222|gb|EEP46939.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1]
          Length = 726

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 192/551 (34%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 177 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 234 YKWIKILAG----------KTGKVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 276 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 313 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   IKD +A  R I +++
Sbjct: 352 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFERQEIKDALAYLRLINNRQ 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A    +      
Sbjct: 406 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRASTALLRFQ 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 466 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 526 DDAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 586 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAQK 611

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 612 KLTISYAESRR 622


>gi|315103757|gb|EFT75733.1| UvrD/REP helicase [Propionibacterium acnes HL050PA2]
          Length = 1071

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 149/997 (14%), Positives = 295/997 (29%), Gaps = 139/997 (13%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-----ERFSLLSS 71
                + L    +  +NK    +   G   I +    L  A  +            +    
Sbjct: 135  AARAYQLAAEVIMGLNKAPLAATHMGPTFIAQAVVKLAGAMASHDASPGKVRRADARWRQ 194

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
              L        +  T+    +  D+ + L +  +    +                     
Sbjct: 195  MLL--------DAPTKRGGDRYADIDKWLSRVDEREELL--------------------- 225

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L A Y+  KK+  +++F D ++    L+        +  ++      +L+DE QDTS  
Sbjct: 226  DLVAAYQNLKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSA 282

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q +V+ +L   F    + H     + AVGD  Q+IY + GA    +L   R    +    
Sbjct: 283  QADVLAAL---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---E 336

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            G    ++ L  + R    I+   +               ++  +R   S   +       
Sbjct: 337  GTPAQVLSLATNRRCADQIINAAN--------------VASEELRQTLSSAAESDDHDPA 382

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                     Q     E       ++          +  A  +       TI         
Sbjct: 383  GDRAEVAVGQPLIAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------A 434

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  D  +LVR+  D   +            + V   +   L     I  ++A  R ++ +
Sbjct: 435  RWSDAAILVRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRLLVDR 490

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFAN 475
            +DD +   +L +P    S DD+  +  +                      + + + +   
Sbjct: 491  QDDAAMATLLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRP 550

Query: 476  CGISKFQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
             G  + Q  +K +   I      Q  SP D    I           +   +      D L
Sbjct: 551  GGHERLQCAVKRVCAEIVEVDAHQGDSPDDLVLRIEAITGLIDDIAADDPHRSAARRDHL 610

Query: 530  DEFLNFTLRNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLES 585
            D   N      ++    ++  +++ L         + RA + + + V + TVH AKGLE 
Sbjct: 611  DALWNAIREVRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEW 670

Query: 586  PVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            P+V + D    VF              ++PS        I  P S S  +  + +    +
Sbjct: 671  PLVIIPDMAQGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKE 730

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-----DMVYDSFHNDERV 695
             S   E  RL YV +TRA ++L++  H      K S     Y     DM+   + +    
Sbjct: 731  DSQWAEA-RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGER 789

Query: 696  K--------KIKLTNSINKDEWIAYEWSTHHPENTPLER------EETIKQLMDEQKIPK 741
                        +   +          S   P      R      +  +K       +  
Sbjct: 790  PDNVIQAGTPWPVFADVGHGLIDNASRSVDDPGQADRVRVWWTDADALLKDARRHIDLQD 849

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHK 800
            ++  P +   ++   L+ +    +           ++    G   H+ + Q +       
Sbjct: 850  EVALPPRLTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIP 909

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINC 857
              +                       + +R L +  +  A     ++    ++V      
Sbjct: 910  LFDAEEVAELDEENTTQEAVAAEPSGAESRALRS--LCQAFEESRWAGATVLAVEKSFVM 967

Query: 858  PKKDIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 ++ GR+D +     +     + ++KT      +          QLSIY      +
Sbjct: 968  TIGQTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQA 1019

Query: 915  YPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                   +  +  +V   +             A I T
Sbjct: 1020 RGIDPSRVRAVFHHVGANETISAEPLLDADQVAAILT 1056


>gi|13471509|ref|NP_103075.1| DNA helicase II [Mesorhizobium loti MAFF303099]
 gi|14022251|dbj|BAB48861.1| DNA helicase II [Mesorhizobium loti MAFF303099]
          Length = 817

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/550 (19%), Positives = 178/550 (32%), Gaps = 113/550 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+ +   + +       +     +   +IL+DE QDT+ 
Sbjct: 182 RELYKAYQERLQTLNACDFGDLLCHPIRIFRANPD---VLKDYHRRFKYILVDEYQDTNT 238

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +          +   +  VGD+ QSIY + GAE   +LR  +        
Sbjct: 239 AQYMWLRLLAQRAEG-----RATVNICCVGDDDQSIYGWRGAEVDNILRFDKDFP----- 288

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +II L  ++RSTA IL     + +  E   G +  +                   
Sbjct: 289 ---GATIIRLERNYRSTAHILGAASHLIAHNEGRFGKTLFTDR----------------- 328

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                    +     + +  + +DS  +       AR I  TI                 
Sbjct: 329 ---------NDPEDGKVNVHAAWDSEEE-------ARAIGETIEAYQRQKH--------- 363

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D+ +LVR              L     ++          + + I+D +A  R + +
Sbjct: 364 -NLNDMAILVRASFQMRAFEDRFITL----GLNYRVIGGPRFYERMEIRDALAFFRVVAN 418

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++  P     E  I +I  T R     + E         +      +  + 
Sbjct: 419 SGDDLAFERIVNVPKRGLGEATIRQIHDTARALRIPMLEAAGNLAESDELKPKPRAALRE 478

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
           V           +     +    IL        + +    E    ++ L E +      E
Sbjct: 479 VAANFERWQKALETKPHTELAETILEESGYTDMWKNDRSAEAPGRLENLKELIRSMEEYE 538

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L S LE     +    +A  + V IMT+H+AKGLE   VFL      +F H
Sbjct: 539 S--------LRSFLEHVALVMDAEQNAGQDAVSIMTLHSAKGLEFETVFLPGWEEGLFPH 590

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                  +    +S  EE  RL YVG+TRA  
Sbjct: 591 QR--------------------------------ALDEGGRSGLEEERRLAYVGLTRAKK 618

Query: 661 QLIICKHSNT 670
            L I   SN 
Sbjct: 619 NLHIWFVSNR 628


>gi|56414941|ref|YP_152016.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. ATCC 9150]
 gi|197363869|ref|YP_002143506.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. AKU_12601]
 gi|56129198|gb|AAV78704.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
            Paratyphi A str. ATCC 9150]
 gi|197095346|emb|CAR60904.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
            Paratyphi A str. AKU_12601]
          Length = 1181

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 125/874 (14%), Positives = 270/874 (30%), Gaps = 123/874 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
              +  +TV E    +        + V+  +  L       S  +    +L    G ++  
Sbjct: 634  DENAWDTVVEEFDGYRQIWHK--RGVMPMLRAL------MSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L          +                      ++    +   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAEES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYDSF 689
            I   +     E  RLLYV +TRA     +         S+   E   +Q     ++    
Sbjct: 787  IALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGE 846

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
              D    +  +    ++D       +T     +       E   + +          +  
Sbjct: 847  PMDAAGFRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + +    +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV----S 850
                +           +          L ++  +  N     ++     +   E+     
Sbjct: 967  PIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLP 1026

Query: 851  VSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTHHH 888
            ++  +   + D +I                       G ID +   +   ++ +YK++  
Sbjct: 1027 IAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWL 1086

Query: 889  VPQEIE---------HIPYTHIAQLSIYEKILKD 913
                              + +  Q  +Y   L  
Sbjct: 1087 GEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|159039726|ref|YP_001538979.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205]
 gi|157918561|gb|ABV99988.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205]
          Length = 794

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/592 (16%), Positives = 182/592 (30%), Gaps = 118/592 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    Y+   ++   LDF+DLI+ T  LL+       +     +   H+L+DE QD
Sbjct: 195 RALAEAYTLYQRRLREAHALDFDDLIMTTVHLLQSHPH---VAETYRRRFRHVLVDEYQD 251

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +I+ L             P  L  VGD  QSIY+F GA  + +L  +R     
Sbjct: 252 TNHAQYVLIKELVSG-----TAGLDPAELCVVGDADQSIYAFRGATIRNILEFERDF--- 303

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL   + V     + +     S                
Sbjct: 304 -----TDARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS---------------- 342

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                      ++        + +         +    A  +A  I  ++          
Sbjct: 343 -----------EAGSGDPIVGYVA--------DTEHTEADWVAREIDRLVDDGDT----- 378

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D+ V  R    + +   +         +           +   ++D +A  R 
Sbjct: 379 ----RPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLRA 430

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------SK 480
           +++++D +S   +L +P     +     +          +    + A           + 
Sbjct: 431 LVNEDDTVSLRRVLNTPRRGIGDRAEACVEALASRDRISFGAALRRAKEAPGISTRAANG 490

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
               +  +     +A+  +P +   ++L       +       +    +D L E ++   
Sbjct: 491 IADFVALLDGAREVAENSAPEEVLEVLLNRSGYLMELEESLDPQDAGRVDNLQELVSVAR 550

Query: 538 RN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
                      +   +++   + +  L      +      +   V +MT+HTAKGLE PV
Sbjct: 551 EYTERVEALGAEGERATVAGFLEQVALVADADQVPADDPEHQGVVTLMTLHTAKGLEFPV 610

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFL      VF H                                            EE 
Sbjct: 611 VFLTGMEDGVFPHARTFG----------------------------------DNHELEEE 636

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            RL YVG+TRA  +L + +    S   +         + +      R ++ +
Sbjct: 637 RRLAYVGITRARQRLYLSRAITRSAWGQPAYNAPSRFLAELPEELVRWERTE 688


>gi|323526768|ref|YP_004228921.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
 gi|323383770|gb|ADX55861.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
          Length = 787

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 118/724 (16%), Positives = 215/724 (29%), Gaps = 168/724 (23%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W + +   S                ++ +   L            
Sbjct: 28  GAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAAREMMSRLSALLPIDTRGMWIGT 87

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F  L +  L             + + T +       L + L         K  Q      
Sbjct: 88  FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++    K   +T         L   Y++  ++  V+DF +L++   +LL        +R
Sbjct: 148 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F 
Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKLLAGQTNA----------IFAVGDDDQSIYAFR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +   +     R         +I+L  ++RS   IL   +++ +      G +  
Sbjct: 255 GANVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + ++ +  A  I 
Sbjct: 307 TD---------AGHGEPVRVY--------------------------ESATDTQEAGWIV 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +I T T             +I VL R    +  I         +  I+       
Sbjct: 332 EEIKALISTGT----------SRSEIAVLYRSNAQSRTIEHTL----VNAGIAYRVYGGL 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   
Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYNCSMAAA 437

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
           I   A    S        I ++    Q  S  +    ++ A      + + R G + ++ 
Sbjct: 438 IPYVAGKAGSSLSAFANLIGKMRAETQQMSLPETVEYVVRASGLADFYQNEREGQDRLEN 497

Query: 529 LDEFLNFTLRNEQNS--------------------------------------------- 543
           L E +N                                                      
Sbjct: 498 LQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATDDPNTVVLDAPGIADPAQ 557

Query: 544 -YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              ++  L   L             A    V++MTVH AKGLE   VF+      +F H+
Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                    ++    EE  RL+YV +TRA ++
Sbjct: 618 NS----------------------------------AMESDGLEEERRLMYVAITRAKER 643

Query: 662 LIIC 665
           L + 
Sbjct: 644 LYLS 647


>gi|253698715|ref|YP_003019904.1| UvrD/REP helicase [Geobacter sp. M21]
 gi|251773565|gb|ACT16146.1| UvrD/REP helicase [Geobacter sp. M21]
          Length = 731

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 106/736 (14%), Positives = 223/736 (30%), Gaps = 145/736 (19%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--------KKAQTLQQASQTQCIEERFS 67
           +              +++   L  E G P           K A  +++       +    
Sbjct: 22  LLVLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKAAGEMRERLAHMLGDGELP 81

Query: 68  LLSSFFLTQKFTPQKNII------------TQEINKKSPDLKEKL---------KKSQDE 106
           L+S+F  T     +  I              ++  K   D   +L         K     
Sbjct: 82  LISTFHSTCARILRSEIRHLGYDSNFAIYDDKDCEKLLKDCATELNLDEKRYPAKALAGA 141

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             + +++        +          +   Y+E  K+   +DF DL++    LL++    
Sbjct: 142 LDEFKNQGLAPDQVPADSPYQATLARVYRCYQERLKRCNAVDFGDLLLLAVQLLEQH--- 198

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R K  Q    I++DE QDT+ +Q+ +++ L  +           + L  VGD+ QSI
Sbjct: 199 REVRDKYLQRYRWIMVDEYQDTNPVQYRLVQLLAGE----------RKNLCVVGDDDQSI 248

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  ++              +++L  ++RS+  IL     V       + 
Sbjct: 249 YGWRGADIRNILEFEKDFP--------GVKVVKLEQNYRSSKTILDGAWNVVQKNRGRKP 300

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW           + ++ ++ +  +   +       A
Sbjct: 301 KR---------------------LW-------TDNPDGERIAYRTLPNEWEE-------A 325

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R +       +                 ++ V  R    +  I            I+   
Sbjct: 326 RTVCRETERFLDEGGDL----------SEVAVFYRTNAQSRAIEDAM----VSAGIAYHM 371

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465
                    L +KD++A  + + +  DD++   ++ +P        + ++      +   
Sbjct: 372 VGGVRFYARLEVKDILAYLKVLDNPSDDVALKRIINTPPRGIGNTTVQRLSEFAAEKGIP 431

Query: 466 VYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           +Y+ + + A           K     + I      A+     +  + I+       +  +
Sbjct: 432 LYDAMLEGAFGPLLSVAAKGKVAAFAQEIDGYKEKAEQMPLSELTSTIIYDSGYFARLKA 491

Query: 520 ---RFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                  E I+ L E +      E       L + + ++      +++          +M
Sbjct: 492 LGSDEAQERIENLQELVTAMQAFENGPGEKGLADFLEQVALVS-DLEQEGDGKKASATLM 550

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P+VF++    ++F H                                  +
Sbjct: 551 TLHSAKGLEFPLVFIIGMEERLFPH----------------------------------V 576

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                 +  EE  RL YVGMTRA  +L +          +         + D        
Sbjct: 577 RALEDPAQMEEERRLCYVGMTRAKKRLFLLNVRRRHIFGQEQMNPPARFIADIPRELLDT 636

Query: 696 KKIKLTNSINKDEWIA 711
                  S  ++    
Sbjct: 637 GDNWQEPSRQREFPSH 652


>gi|19703927|ref|NP_603489.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714099|gb|AAL94788.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 735

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 106/546 (19%), Positives = 181/546 (33%), Gaps = 117/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y  A  ++  +DF D+++NT  LL+K +    I  K+  +  +I+IDE QDT+ +
Sbjct: 167 EVYDKYNRALLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +          
Sbjct: 223 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYNN----- 267

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I++L  ++RST  IL   +++    ++++                        LW
Sbjct: 268 ---AKIVKLEENYRSTTIILDAANELIKNNKSSKDKK---------------------LW 303

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              +  +   + S       RI   I                 +
Sbjct: 304 -------TQNGKGDLIKVLACDNGRDEVS-------RIIEFIRENHQNG----------V 339

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D+ +L R    + +           Y I               IKD++A    I++ 
Sbjct: 340 AYRDMTILYRTNAQSRIFEEGL----LRYSIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 395

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHV 484
           +D+L+   ++  P     E  I KI    R     + E +            G  K   +
Sbjct: 396 QDELNLQRIINVPKRKVGEKGIEKIITYARENNLNLLEALSHIKEISGLTVVGKEKLLEM 455

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN 542
              I EL  ++   +       ++   K        +      I+ +DEF N  L  E  
Sbjct: 456 YDIIKELKDLSYTETTSYIVQTLIDKIKYIDYIKDNYDDAEARIENIDEFKNSILELE-- 513

Query: 543 SYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      L   LE               + V++MT+H +KGLE P+VFLV   +++F   
Sbjct: 514 NVVGELRLNEYLENVSLISATDNLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGT 573

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +   EE  RL YV +TRA  +
Sbjct: 574 ----------------------------------RAMFDEKEMEEERRLCYVALTRAEKK 599

Query: 662 LIICKH 667
           L +   
Sbjct: 600 LYLSHA 605


>gi|330444888|ref|ZP_08308543.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489198|dbj|GAA03040.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 723

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 177/549 (32%), Gaps = 116/549 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + + Y+EA  +  ++DF +L++ + +LL+       IR        HIL+DE QDT+ I
Sbjct: 172 RIYSAYQEACDRAGMVDFAELLLRSYELLRDN---KHIREHYQARFKHILVDEFQDTNSI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R +                +  VGD+ QSIY + GA+ + + R            
Sbjct: 229 QFAWLRLMAG----------PDCHVMIVGDDDQSIYGWRGAKVENIQRFLNEF------- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
             + S I L  ++RST +IL   +++ +      G                       LW
Sbjct: 272 -NEASSIFLEQNYRSTGNILNAANELIANNNERMGKK---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  S F+ L +       AR     I                  
Sbjct: 310 -------TEGGEGEPISLYSAFNELDE-------ARFAVGKIKEWRDQGGSL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +   L R    + ++            +           +   IKD ++  R I ++
Sbjct: 348 --NETAFLYRSNAQSRVLEEAL----IQAGLPYRIYGGMRFFERQEIKDALSYMRLISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD SF  ++ +P     +  +  I    R    T+++                +  +  
Sbjct: 402 NDDASFERVVNTPTRGLGDRTLETIRLAARDRGLTMWQASIALLEEQVLAGRAGNALRRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE- 540
           I+ I+ L         +     ++     R  +    G +     + L+E +  T + E 
Sbjct: 462 IELINALEDDTAELPMYQQTDEVIRNSGLRAMYEQEKGEKAQARIENLEELVTATRQFEI 521

Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            + +                          + V++MT+H+AKGLE PVVF+V     +F 
Sbjct: 522 PEEAEDMSPLAAFLAHAALEAGDGQADDFEDAVQLMTMHSAKGLEFPVVFMVGVEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                   +    EE  RL YVGMTRA 
Sbjct: 582 SSRTT----------------------------------EEVGRLEEERRLCYVGMTRAM 607

Query: 660 DQLIICKHS 668
            +L I    
Sbjct: 608 QKLYITYAE 616


>gi|304390802|ref|ZP_07372754.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304325685|gb|EFL92931.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 877

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 201/707 (28%), Gaps = 144/707 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L   ++                 + ++ ++L   +        
Sbjct: 85  GAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLVGNAAKYMWVST 144

Query: 66  FSLLSSFFL---------TQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F       L         T+ F+      T+ +  +    +         K    +  + 
Sbjct: 145 FHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIKGRGLDPKRFPPKSFAAKISQA 204

Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++   T ++F           L   +   Y++  ++    DF+DLI +T  L K      
Sbjct: 205 KNELITPEVFALGAGVDKMSQLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPD-- 262

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I  +   +  H+L+DE QDT+  Q+E+IR LT           SP  L  VGD  QSIY
Sbjct: 263 -ILARYRAKFRHVLVDEYQDTNPAQYELIRLLT---VGAAGDAQSPAELTVVGDSDQSIY 318

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA  + +   +              + + L  ++RST  IL+V + + S  E  +  
Sbjct: 319 AFRGATIRNIEEFESDFP--------GATTVYLEQNYRSTGTILSVANAIISENEGRRKK 370

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +  +      ++                                    L    +    A 
Sbjct: 371 NLWTDAGQGVQAV-----------------------------------LYAADTDRDEAA 395

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   +  +    +             +  V  R    +  +  +         I     
Sbjct: 396 FIVRELQKLRQEGS----------SWDEFAVFYRTNAQSRSLEEML----TREGIPYRVV 441

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC---------- 457
                 D   IKD +A      +  DD + + +L  P     +  +  I           
Sbjct: 442 GGTKFYDRREIKDAIAYLCAAANPADDGNLLRVLNEPKRGLGDKAVQTIREVSLRENLDF 501

Query: 458 -TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQ 515
                +      +    +    +     +  +  +  + A      +     L       
Sbjct: 502 GQALRQFLPGGTHHGDLSAKASAGIAEFVGVLDAMRALDAASAPLDEILDTALEDSGYLP 561

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANH-- 569
           +       +    ++ L E  N       +   + L + +  +       +   +A    
Sbjct: 562 KLRKSNDPQDDARVENLAELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAAQPE 621

Query: 570 -----------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                       EV +MTVHTAKGLE   VF+      +F H                  
Sbjct: 622 RPADPAHPAAPPEVTLMTVHTAKGLEFNTVFVTGMEDGLFPHSRSL-------------- 667

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                      E  RL YV +TRA  +L + 
Sbjct: 668 --------------------ENPQDIAEERRLAYVAVTRARQRLYLT 694


>gi|213424879|ref|ZP_03357629.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 923

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 48  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 106

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 107 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 158

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 159 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 208

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
           A    +   + ++           V          +    P    W    +S       S
Sbjct: 209 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 258

Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 259 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 316

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
               SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 317 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 373

Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 374 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 425

Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                       + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 426 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 479

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 480 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 526

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
           + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 527 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 586

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
               D    +  +    ++D       +T     +       E   + +          +
Sbjct: 587 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 646

Query: 746 PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                         D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 647 SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 706

Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                 +           +          L ++  +  N     ++     +   E+   
Sbjct: 707 TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 766

Query: 850 -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
             ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 767 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 826

Query: 887 HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                               + +  Q  +Y   L  
Sbjct: 827 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 862


>gi|146298462|ref|YP_001193053.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
 gi|146152880|gb|ABQ03734.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
          Length = 1052

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 142/919 (15%), Positives = 298/919 (32%), Gaps = 119/919 (12%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS------LLSSFFLTQKFTPQKNII 85
             K ++L  E  +       + L    +     + FS       L S     KF P+    
Sbjct: 219  KKMLALCKELESENEQFAIEALSLIEKNGIDLKSFSRGTFPNHLESIR-DGKFNPRNKTF 277

Query: 86   ----------TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                      T +      ++   L +   +  K  ++ + YK F   +  L+L   ++ 
Sbjct: 278  HEFDDIAINKTAKDKSLIENIIPDLLQILSKIYKNFEKRDFYKAFLKNITPLSLLNTVSN 337

Query: 136  HYEEAKKKNCVLD---FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               + + +  VL    F  +I            + +I  ++ +   H  IDE QDTS +Q
Sbjct: 338  ELAKIQSEQNVLSISEFNAIIHREIQ----NQPAPFIYERLGERYRHFFIDEFQDTSEMQ 393

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            W+ +  L ++   G +   +  TL  VGD KQSIY + G + ++ +   +          
Sbjct: 394  WQNLIPLIDNSLSGLDDLGNKGTLMIVGDPKQSIYRWRGGKAEQFIELSKDV---NPFNN 450

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH--RSSRIGQVGTVQL 310
               +I  L  ++RS ++++   +  F +  +     +       H  +++   + G V +
Sbjct: 451  PDKAIKHLNTNYRSYSEVIEFNNAFFKLISSEFSNEDYKDLYENHSFQNTNSKKGGYVNI 510

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                + +     + +          + ++S   +LA     TI  +I             
Sbjct: 511  SFLPIIEKSDFADEE---------EVIEKSDLYVLATL--NTIQKVIREG---------- 549

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
             + KDI++L RKR     I            I ++ ++  ++ +   ++ ++ L R++ +
Sbjct: 550  FEYKDIVILTRKRDQGIAIANYLTE----QNIPLLSSETLMIKNATEVRLIINLLRYLNN 605

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              D  S    L                 +    + + + + +       K+         
Sbjct: 606  NADLESKANFL--------HFLAENKEIELPVHDFIAQGMAQKFEEDFEKWLLTFDVSLS 657

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                 +  S ++   +I+              +E    +  FL+  L  +  + + + + 
Sbjct: 658  F-ENVRKKSLYEAVEIIISKFV--------LPSEGNAYVQFFLDIVLERDIRNQAGVADF 708

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +S  ++            +N VRIMT+H +KGLE PVV +             K      
Sbjct: 709  LSFWDKNSEKFSIPSPEGNNAVRIMTIHKSKGLEFPVVIMPFAEEDYNRKPKDKLWLDTE 768

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLI--KHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
              +      +    S       S  I     K+    +   +LYV +TRA +QL +   S
Sbjct: 769  ETDLGVPKALIDNSSAVEGFGESASIVFNLKKQEELLDNINVLYVALTRAEEQLYVISQS 828

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                +                 +       KL         ++    T            
Sbjct: 829  LKERKDGEMPNNMASYFIKYLMHKGIYDSEKLEYEFGNKIRLSKSEKTVDL--------- 879

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
                              +K       +LNP  I    +  L       +  + G I+H+
Sbjct: 880  ------------------VKTIPIVKEVLNPKNIKIAQREALMWGTHQQEAISYGNIVHE 921

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
            +L  +    +      +              E   +L ++  ++ +P ++     +    
Sbjct: 922  ILAFVKDKSDVDL--AVVKALENGLITIDQSEM--VLKTLKEIVNHPELSICFDGNHK-- 975

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQ-NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            V     I      I+   + D++ ++     ++ +YKT              +  Q+  Y
Sbjct: 976  VLNEQTIVQKAGKIL---KPDRVVLTNNKEAYLLDYKTG--------AFNSKYQKQIQEY 1024

Query: 908  EKILKDSYPNKSLVCLLIY 926
            +  ++D    K L   LIY
Sbjct: 1025 QDAIEDL-GYKVLKRALIY 1042


>gi|331684463|ref|ZP_08385055.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H299]
 gi|331078078|gb|EGI49284.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H299]
          Length = 1180

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 273/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFKAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDAITAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +       +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVDEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDSLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|218690946|ref|YP_002399158.1| exonuclease V subunit beta [Escherichia coli ED1a]
 gi|218428510|emb|CAR09291.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli ED1a]
          Length = 1180

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 131/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      ++ S  
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          +  +    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      +      D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|89092193|ref|ZP_01165147.1| DNA helicase II [Oceanospirillum sp. MED92]
 gi|89083281|gb|EAR62499.1| DNA helicase II [Oceanospirillum sp. MED92]
          Length = 737

 Score =  276 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 96/583 (16%), Positives = 187/583 (32%), Gaps = 119/583 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+A ++  ++DF +L++ + +L + ++    +     +   +IL+DE QDT+ I
Sbjct: 172 AMYEAYEQACERGGMIDFGELLLRSLELFRDKN--PALLEHYQERFRYILVDEFQDTNTI 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L              + L AVGD+ QSIY + GA+ + +              
Sbjct: 230 QYGWLQLLCG----------GQQKLMAVGDDDQSIYGWRGAKIENIQNLSTHFP------ 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  ++RST  IL   ++V    +   G                         
Sbjct: 274 --GVETIKLEQNYRSTETILRAANEVIRNNQGRLGKELH--------------------- 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                           S  + F+   +       AR I   I        +         
Sbjct: 311 -------TESGEGDPISLYAAFNEQDE-------ARFIVDQIGKWSQEGNL--------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             K+  +L R    + ++            +           + L IK+ ++  R + ++
Sbjct: 348 -RKECAILYRSNAQSRVLEEAL----IRSGVPYRIYGGQRFYERLEIKNALSYLRLMNNR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHV 484
           +DD S   ++  P        I  I    R +  +++    +            +  Q  
Sbjct: 403 DDDTSMERVINVPTRGIGTRTIEIIREHARSQGISMWRASNEIVELKRLPARASNALQAF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ 541
           +  I+++    +    H+    ++      +      G +     + L+E +    +   
Sbjct: 463 LDLINQMAQDTEDTLLHEQTEHVIQHSGLIEHHKKEKGEKAQSRIENLEELVTAAKQFNS 522

Query: 542 NSYSSLQE-----LISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                L E     L + L+Q              + V++MT+H+AKGLE P VFL     
Sbjct: 523 QWDEFLDEEFSSPLAAFLDQAALDAGDAQADEYQDSVQLMTLHSAKGLEFPQVFLAGVEE 582

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F HK                                      +    EE  RL YVG+
Sbjct: 583 GLFPHKMS----------------------------------IEEPGRLEEERRLCYVGI 608

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           TRA  +L I    +     +         + +         ++
Sbjct: 609 TRAMQKLFITYAESRRLHGQDTYNRPSRFISEIPSELMEEVRL 651


>gi|301029031|ref|ZP_07192184.1| putative DNA helicase II [Escherichia coli MS 196-1]
 gi|299877994|gb|EFI86205.1| putative DNA helicase II [Escherichia coli MS 196-1]
          Length = 555

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 6   QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 62

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 63  IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 107

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 108 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 143

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 144 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 182

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 183 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 235

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 236 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 295

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 296 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 355

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 356 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 415

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 416 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 441

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 442 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 484


>gi|110642987|ref|YP_670717.1| exonuclease V subunit beta [Escherichia coli 536]
 gi|110344579|gb|ABG70816.1| exodeoxyribonuclease V beta chain [Escherichia coli 536]
          Length = 1180

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 272/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLWALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          +  +    L   IT +L+ P+      +      D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FEPQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|326693832|ref|ZP_08230837.1| ATP-dependent DNA helicase PcrA [Leuconostoc argentinum KCTC 3773]
          Length = 748

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 119/768 (15%), Positives = 231/768 (30%), Gaps = 149/768 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC-IEE 64
           G    ++  L ++    +    V                 + ++   L      +     
Sbjct: 30  GAGSGKTRVLTHRIAHLVKDLNVMPWRILAITFTNKAAKEMRERIGALLSEDVARDIWVS 89

Query: 65  RFSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR-------- 113
            F  L+   L +        +N    + + +   +K  +     +  +   R        
Sbjct: 90  TFHALAVRILRRDGENIGLSRNFTIIDTSAQRTLMKRVINDLNLDTNQYEPRTVLGMISN 149

Query: 114 ------FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                        ++  A       + A Y+   K+   +DF+DLI+ T DL +     +
Sbjct: 150 AKNDMLRPKDYAQQADNAFQETVAEIYAAYQAELKRAQSVDFDDLIMLTIDLFQSS---S 206

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +  +   + +++ +DE QDT+  Q+ ++  L +            + L  VGD  QSIY
Sbjct: 207 DVLARYQNQFDYLHVDEYQDTNDAQYTIVNMLAQ----------RSQNLAVVGDADQSIY 256

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA    +L  ++               I L  ++RST +IL   + V +        
Sbjct: 257 GWRGANMNNILNFEKDYPN--------AQTILLEQNYRSTQNILDAANAVINNNNERLPK 308

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW              + ++           S    A 
Sbjct: 309 N---------------------LW-------TQNGQGDKITYYRA-------QSEHDEAN 333

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I  M            + +   D  VL R    +  +            +     
Sbjct: 334 FILANIQKMRAE---------KQMAYSDFAVLYRTNAQSRNVEEAL----VKANMPYTMV 380

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                 +   I D+MA  + + +  D+ +F  ++  P        I ++    +     Y
Sbjct: 381 GGHKFYERKEILDIMAYMQLVTNPNDNAAFERIVNEPKRGLGATSITRLRELANRLNVSY 440

Query: 468 -------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                  E     +    SKF    + +HEL   A+F +  +   +++     RQ    +
Sbjct: 441 MTAIESIELAPAISTKATSKFLEFAEMMHELRQQAEFLNVTELAEIVMTRSGYRQMLAEK 500

Query: 521 FGNE---VIDVLDEFLNFTLRNEQ----NSYSSLQELISELEQYPPTIKRAH-SANHNEV 572
              +    ++ L+EFL+ T   +     +   ++  +   L                  V
Sbjct: 501 NDPDSQARLENLEEFLSVTKEFDAKYQPDDPEAIDPMTDFLGTTALMSDLDDFEEGDGAV 560

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVFLV     +F                                  
Sbjct: 561 TLMTLHAAKGLEFPVVFLVGMEEGIFPLSRAL---------------------------- 592

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                 + +   EE  RL YVG+TRA  +L +                +  ++Y    ++
Sbjct: 593 ------MAEDQLEEERRLAYVGITRAMKKLFLT-------------NAFSRLLYGRTQSN 633

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
           E  + I   +    +             + P +R+    Q    +  P
Sbjct: 634 EASRFINEISPALLETEYGQNTRVTPRRDLPFDRKNQHAQATTYRATP 681


>gi|300920325|ref|ZP_07136763.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 115-1]
 gi|300412650|gb|EFJ95960.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 115-1]
          Length = 1180

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 131/971 (13%), Positives = 296/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      ++ S  
Sbjct: 215  DETLASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDVVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFVTNFRVQEQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872

Query: 720  ENTPLER------EETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
             +    +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDKQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          + ++    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      +      D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|197287153|ref|YP_002153025.1| DNA-dependent helicase II [Proteus mirabilis HI4320]
 gi|194684640|emb|CAR46555.1| DNA helicase II [Proteus mirabilis HI4320]
          Length = 718

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 117/724 (16%), Positives = 220/724 (30%), Gaps = 132/724 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L   Q S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVEQASPFSIMAVTFTNKAAAEMRHRIEDLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    + + +   ++  +K    +  +   R         
Sbjct: 90  FHSLAHRLLRAHYLDAGLPQDFQIIDSDDQYRLIRRIVKSMALDDKQWPPRQGMWYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +        T    +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 150 KDEGLRPQHIQTYGNPVETTWLKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---QI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    +IL+DE QDT+ IQ+  IR L                +  VGD+ QSIY +
Sbjct: 207 LEHYQHRFTNILVDEFQDTNRIQYAWIRMLAGQ----------TGKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +                    I L  ++RST++IL   + + +   +  G + 
Sbjct: 257 RGAQVENIQNFLNEFP--------GAETIRLEQNYRSTSNILKAANALIANNSDRLGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +       AR +
Sbjct: 308 --------------------LW-------TEGAEGEPISLYCAFNDLDE-------ARYV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     D  +L R    + ++                    
Sbjct: 334 VGRIKRWHEEGGAL----------ADCAILYRSNAQSRIMEEAL----LQANKPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD ++  R   ++ DD SF  ++ +P     +  +  +    R    T++E
Sbjct: 380 QRFFERQEIKDALSYMRLTANRHDDASFERVVNTPTRGIGDRTLDVVRQVARDNQITLWE 439

Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                   +  A   I+     ++ I  L +       H     I+     +  +    G
Sbjct: 440 SALQVIEHKMLAGRAIAAIARFLELIETLANETADMPLHVQTDRIIRDSGLKAMYEQEKG 499

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTV 577
            +     + L+E +  T +   Q+    L  L + L             A  + V++MT+
Sbjct: 500 EKAQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAALESGEGQADAYQDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE   VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFSQVFIVGVEEGMFPSQMSLDEGG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA  +L +    N     K         + +         +
Sbjct: 591 -----RLEEERRLAYVGVTRAMKKLTLTYAENRRLYGKEVSHRPSRFIGELPKECVEEVR 645

Query: 698 IKLT 701
           ++ T
Sbjct: 646 LRAT 649


>gi|307700275|ref|ZP_07637315.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
 gi|307614486|gb|EFN93715.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
          Length = 900

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 111/730 (15%), Positives = 205/730 (28%), Gaps = 164/730 (22%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L   +V                 + ++ +TL   +        
Sbjct: 78  GAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERVETLVGNAAKYMWVST 137

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F         +   +  +T+ F+      T+ +  +    +         K         
Sbjct: 138 FHSSCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNA 197

Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++       F    A      L   + A Y++  ++    DF+DLI     L ++     
Sbjct: 198 KNELVEPATFAEMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRRHPE-- 255

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRTLFAVGDE 222
            I  K   +  ++L+DE QDT+  Q++++R L  D        G         L  VGD 
Sbjct: 256 -ILAKYRDKFRYVLVDEYQDTNPAQYQLVRLLARDPLGDPRLDGALGAHPGAGLTVVGDS 314

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY+F GA  + +   ++             + + L  ++RST  IL+V + + S   
Sbjct: 315 DQSIYAFRGATIRNIEEFEQDFP--------GATTVYLEQNYRSTGTILSVANAIISENS 366

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                +                     LW       ++   P+   + +         + 
Sbjct: 367 GRHKKN---------------------LW------TEAGDGPKAIMFAA--------DTE 391

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  I   I +     T             +  V  R    +  +  +         +
Sbjct: 392 RDEAAFIIREIRDAHTAGTP----------WDEFAVFYRTNSQSRALEEML----TRENV 437

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                      D   IKD +A      +  DD + + +L  P     +    KI      
Sbjct: 438 PYRVVGGTKFYDRKEIKDAIAYLTAAANPADDGNLLRILNEPKRGLGDVAQTKIREAARL 497

Query: 463 TETVYEYIQK-----------FANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGA 510
           + T +    +            +    +    ++  +  L  + +      +     L  
Sbjct: 498 SGTSFGQAMRGFITGGVHEGQLSAKATTALASLVNLLDNLRGLDEAGAPLDEILGTALED 557

Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHS 566
                +  +    +    I+ L E          +   S L + +  +     T +    
Sbjct: 558 SGYLPKLRASNNPQDDARIENLLELHAVAEEFSLSEPDSRLADFLERISLVADTDQLPDQ 617

Query: 567 ANHN-------------------------------EVRIMTVHTAKGLESPVVFLVDTGS 595
            +                                 EV +MTVHTAKGLE   VF+     
Sbjct: 618 GSKEVAAKEMAPREPETNVSEASGDHPNPAPETKPEVTLMTVHTAKGLEFNTVFVTGMED 677

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F H                                            EE  RL YV +
Sbjct: 678 GLFPHSRSLDDP----------------------------------EAIEEERRLAYVAV 703

Query: 656 TRASDQLIIC 665
           TRA  QL + 
Sbjct: 704 TRARRQLYLT 713


>gi|262040875|ref|ZP_06014101.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041764|gb|EEW42809.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 720

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/553 (18%), Positives = 179/553 (32%), Gaps = 116/553 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNDLDE-------ARFVVNRIKTWQENGGALEQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++       A    S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETTDMPLHVQTDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMALDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTS 671
             +L +       
Sbjct: 607 MQKLTLTYAETRR 619


>gi|325860071|ref|ZP_08173197.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A]
 gi|325482356|gb|EGC85363.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A]
          Length = 842

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/579 (18%), Positives = 171/579 (29%), Gaps = 120/579 (20%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                                    +   YE   ++   +DF+D+++ T  L +      
Sbjct: 160 ADEYAEDRAATERDRNARM-PAVHLIYKAYEARCRQANAMDFDDILLYTYLLFRDN---R 215

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            IR K  Q+  +IL+DE QDT+  Q  +I  L E          + R +  VGD+ QSIY
Sbjct: 216 EIREKYGQQFEYILVDEYQDTNYAQVNIISLLAE----------THRRICVVGDDYQSIY 265

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF GA    +L  +               + +L  ++RST  I+   + +    E     
Sbjct: 266 SFRGANIDNILDFRNKF--------TDARLFKLERNYRSTQFIVQAANSLMKHNE----- 312

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                  I          G   L++   S  +                          A 
Sbjct: 313 -----RQIPKEVYSKEAAGDKVLYKPCYSDRE-------------------------EAM 342

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  +  +   D              +  VL R    +       R       I     
Sbjct: 343 AVAAELKRIRHGD---------SCDYDNFAVLYRTNAQSRPFEDEFR----KQGIPYKII 389

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE--- 464
                     IKD++A  R + + +D+ +F  ++  P        + KI     +     
Sbjct: 390 GGLSFYQRKEIKDIIAYFRLVANPDDEEAFRRVINYPARGIGNTTVQKIIACAQQHAVSL 449

Query: 465 -----TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                +  EY        ++K       I   I  A     ++    I+          S
Sbjct: 450 WETILSPAEYGLDVNKGTLAKLSSFRMLISSFIKKAALTDAYELGCEIIEKSGVGADIRS 509

Query: 520 RFGNE---VIDVLDEFLNFTLRNEQNSYSSLQE----LISELEQYPPTIKRAHSANH-NE 571
               E     + L+EF++             +E    L   L++           +   +
Sbjct: 510 GNEPEDLARRENLEEFMSAMQGFVDTGREEGREENVYLADYLQEVALYTDADKEEDDVPK 569

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE P VF+V     +F                                 
Sbjct: 570 VTLMTIHAAKGLEFPTVFVVGLEENIFPSPMSSGS------------------------- 604

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                    K   EE  RLLYV +TRA    I+    N 
Sbjct: 605 ---------KHGIEEERRLLYVAITRAERHCILTNAKNR 634


>gi|331658967|ref|ZP_08359909.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA206]
 gi|315295774|gb|EFU55091.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 16-3]
 gi|331053549|gb|EGI25578.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA206]
          Length = 1180

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 132/971 (13%), Positives = 297/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      ++ S  
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQEQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KKS+       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +   +   E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          + ++    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      +      D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|19552002|ref|NP_600004.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389665|ref|YP_225067.1| DNA helicase II protein [Corynebacterium glutamicum ATCC 13032]
 gi|41325000|emb|CAF19481.1| PROBABLE DNA HELICASE II PROTEIN [Corynebacterium glutamicum ATCC
            13032]
          Length = 1070

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 141/1025 (13%), Positives = 283/1025 (27%), Gaps = 156/1025 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +          L       +    S  + T           +          +  + ++ 
Sbjct: 115  TVSTYDSYAGTLIREYGLLLPVEPSARLITQTELYHIARNVVNNYDGELTATQTPATVTE 174

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-A 130
            + L        +++T E  ++  D   KL     +    RD  N             L  
Sbjct: 175  YLLKLVSEMDNHMVTAEDIREESDPFIKLFDELPKGKGQRDNLNAEMTKWRDTQVARLQY 234

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              L    +E      V+ F + +     L         + Y   +    +++DE QDTS 
Sbjct: 235  LPLVKALKEELHNQAVVTFGEQMSKAAHLASTHP---QVGYSQRRRFRVVMLDEYQDTSH 291

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q  ++ SL      G   +       AVGD  Q+IY + GA    +            +
Sbjct: 292  SQRVLLSSLFGGTDPGLTVN-------AVGDPMQAIYGWRGATAANLENFVDDFPVIHLD 344

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
               +    EL  S+R+  ++LT+ + V        G  +  T T++    R G       
Sbjct: 345  GKTRAPKNELTTSWRNPPEVLTLANAV---SREVLGSPDAPTRTVQPLQPREGAP----- 396

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                              W        +  +  ++    A          T  +      
Sbjct: 397  -----------TGEVSLGWFGTAAQEREFVADEMVKHWNARE-----EKGTFTA------ 434

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                   VLVRK++ +  +            I V       L D   I DL++L   ++ 
Sbjct: 435  ------AVLVRKKRHSAPMAEEL----TKRGIPVEIVGLSGLLDIPEIADLISLATMLVR 484

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ------------------- 471
              D+ + + +L  P       D+ ++  +           +                   
Sbjct: 485  PHDNRAALRILAGPHVGLGVADLQRLQGRARNIAGRVSRERREKNPDPLAELDAIIEEAT 544

Query: 472  ---------------------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                                 +F+  G+S+ + +   +  L   +   S  D F  I   
Sbjct: 545  AIEPEAVVGLADAVADLGEGDRFSEEGLSRLKRLATQLRYLRKYSLGRSVADIFADIETV 604

Query: 511  KKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT----I 561
               R + +SR             LD+F         +    L EL+   E          
Sbjct: 605  FNIRTEVLSRQDPHADGAAGTVHLDKF---AEEVASHGGIGLPELLDYFELAKDQEEGLE 661

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDD 615
                +   + V+I+TVH AKGLE  +V ++   +  +  K    +            +  
Sbjct: 662  PGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADASTYDAKASTWLKNVTMIPSSLRGDAG 721

Query: 616  PGIPIWIPQSKSRNNIVS----DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             G P            +     +    +++  +EE +RL YVG+TR+   L++   +   
Sbjct: 722  TGAPEMDTSEADDRKALEDSGKEYTSEVREGLREENSRLFYVGITRSERVLLVTGSALDE 781

Query: 672  NEKKSNQR----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            +  K+                   +W++         +  + +                 
Sbjct: 782  SGTKAKVPYGHLEILRDKAPECVVSWWEGEEGDVEKQKPAEGVFPQLLAADSSGADLVRG 841

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------DTKGK 767
                 N     E   ++ +       +  S    ++  P  L  + +            +
Sbjct: 842  PRAEPNNEGGLESLWEKEVSALIDEHRRLSNPIVEVETPRELTATDLVSMKNNPEQFARR 901

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                     N    RG + H+ L+         R                     +  + 
Sbjct: 902  MRRPVPFKPNTYAKRGTLFHQWLE--------DRFGSTALLDETELPGIDEDYSDDAFIE 953

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
                L +  + +       +   V         + +I GR+D +  +     + ++KT  
Sbjct: 954  ----LRDAFLGSTWEN--RTPEFVEHPFEVTIGEHVIRGRMDAVFHTDGTWMVVDWKTGR 1007

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFA 945
                         I QL++Y          +   +     YV+    F        +  A
Sbjct: 1008 TPTGPEMDAA---IIQLAVYRLAWARLKGLEPEEVRAAFHYVAHDHTFEPNDLPTQEELA 1064

Query: 946  EISTK 950
             + ++
Sbjct: 1065 RLLSQ 1069


>gi|315498764|ref|YP_004087568.1| uvrd/rep helicase [Asticcacaulis excentricus CB 48]
 gi|315416776|gb|ADU13417.1| UvrD/REP helicase [Asticcacaulis excentricus CB 48]
          Length = 772

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/608 (18%), Positives = 198/608 (32%), Gaps = 120/608 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+E  +     DF DL+++T  +  +      I     +   ++L+DE QDT++ 
Sbjct: 196 ELYAEYQERLRVLNACDFGDLLLHTLKIFSEH---TDILEHYHRRFKYVLVDEYQDTNIA 252

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R LT          ++ R L  VGD+ QSIY + GAE   +L+ +R         
Sbjct: 253 QYLWLRILT----------NANRNLCCVGDDDQSIYGWRGAEVDNILKFERDYP------ 296

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL+    +        G +                       
Sbjct: 297 --GAKVIRLERNYRSTQHILSAASGLIRANSARLGKTLF--------------------- 333

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    Q   ++      +D   +       A+ +A  I  +               
Sbjct: 334 -------TDQQGGEKVRVQGLWDGAAE-------AQGVAEDIERLKREGRA--------- 370

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ VLVR              L+    I  V        +   I+D +A  R I S+
Sbjct: 371 -YSDMAVLVRASFQMRAFEERFLMLQ----IPYVVVGGPRFFERAEIRDAIAYLRLIQSE 425

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISKFQH------V 484
           +DDL+F  ++  P     +  + K +   R   ++V   ++          +        
Sbjct: 426 DDDLAFERIVNVPKRGIGDATVQKLLMQARLAGQSVMAAVRDLVQTDELPARAKTPLIGF 485

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQN 542
           ++     +   +  S      ++L          +    G   ID L E +N     E  
Sbjct: 486 LRDYDRWVAALKSTSHDALLDMVLTESGYYDMQRADKTSGGTRIDNLKEMMNAMQDFEN- 544

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                  L + LE     +        N VRI T+H AKGLE PVVFL      VF  + 
Sbjct: 545 -------LEAYLEHVSLVMDLERDNGENSVRISTLHAAKGLEFPVVFLPGWEEGVFPSQR 597

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                            +        EE  RL YVG+TRA +  
Sbjct: 598 S--------------------------------MDENGLKGLEEERRLAYVGLTRAREIA 625

Query: 663 IICKHSNTSNEKKSNQRTWYDMV-YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            +   +N     +   +     +      + E   +     +  + +   ++ + + P +
Sbjct: 626 RVSFVANRQVFGRWTSQIPSRFIDEMPIDHVEATSQTGYNQAGWQSQESRWDRAGYQPNH 685

Query: 722 TPLEREET 729
           T  E +  
Sbjct: 686 TKSEAKAE 693


>gi|50119935|ref|YP_049102.1| exonuclease V subunit beta [Pectobacterium atrosepticum SCRI1043]
 gi|49610461|emb|CAG73906.1| exodeoxyribonuclease V beta chain [Pectobacterium atrosepticum
            SCRI1043]
          Length = 1208

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 130/870 (14%), Positives = 281/870 (32%), Gaps = 122/870 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              ++ +R     +    L  +     +     E K++   L F+DL+   +D L++    
Sbjct: 317  IFEVTERLLETPLSLRDLVIVRALSAIRDSVREEKRQRAELGFDDLLSRLDDALQQPS-G 375

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I +     +IDE QDT   Q+ + R+L                L  +GD KQ+I
Sbjct: 376  EQLASAIRERYPVAMIDEFQDTDPQQYRIFRTLY--------VGQPQCGLLLIGDPKQAI 427

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    +  +          G+  +   L  ++RS+  ++  V+++F   E++  
Sbjct: 428  YAFRGADIFTYMHAR----------GEVAAHYTLGTNWRSSHQMVRGVNRLFERLEHSFI 477

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                    ++   S+ G          +V     Q  P  + W +  + +        +A
Sbjct: 478  FHNIPFLPVKPAESKRG----------LVFDVAGQPQPALQFWLTGEEPIGVGDYQQQMA 527

Query: 347  RRIAYTISNMIGTDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            R+ A  I + +            +  + +++A D+ VLVR R++  LI      L     
Sbjct: 528  RQCAAQIRDWLAASQRNEAWLVTDDSRCLVKASDMSVLVRSRREASLIRDALSRLSIP-- 585

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +       D++ L + +L+ E + +    + + L     + +  +     
Sbjct: 586  -SVYLSNRDSVFTTPEASDILWLLQAVLAPEQERTLRSAMATALMGLDAEQVDALGQS-- 642

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                  E          + ++ + +    L  +    S H     +L +  G ++     
Sbjct: 643  ------ETAWDALVDEFAGYRALWRQRGVLPMLRALMSHHQLAENLLASADGERRITDIL 696

Query: 522  GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                   + E L      L +E      L + I +        +    ++ + V+I+T+H
Sbjct: 697  ------HIGELLQDASATLDSEHALVRWLSQQIVQPNPQAENQQLRLESDRHLVQIVTIH 750

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V+L    +     + I           D                  +    
Sbjct: 751  KSKGLEYPLVWLPFISNFRVQDQGIYHDRDSYQAVLDLQNN-------------EESQTL 797

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             ++    E  RLLYV +TR+     +       S +K  +    +  +       +    
Sbjct: 798  AEEERLAEDLRLLYVALTRSIYHCSVGVAPVQRSRKKDGSSDMHHSALGYLLQRGQESDV 857

Query: 698  IKLTNSINKD-----------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL--- 743
              L + + +               A  W    PE   L+     +QL D  ++       
Sbjct: 858  ATLVSELKEMVGDGVALTPLQTTEAQRWQPDQPELAELQARHIERQLRDGWRVTSYSGLQ 917

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTNL--ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                 N  +    L+   I  + +      +  +  +  + G  +H L + +        
Sbjct: 918  QHGSANAQDLVPRLDIEAIGERQEVGETQLTPHTFPRGASPGTFLHSLFETLDFTQPVDD 977

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCP 858
                     +  +       K  + ++     N     ++   + D  +E+     I  P
Sbjct: 978  DWLAEQLQLQGFEAHWHPVLKAWMDTLLNTPFNERGITLSALDNSDKQAELQFYIPIKAP 1037

Query: 859  KK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
             +                            ++ G ID +   +   ++ +YK++   P  
Sbjct: 1038 IQAAQLDRLAKHYDPLSAQCPSLSFQQVKGMLKGFIDLVFRWEGRYYLLDYKSNWLGPDA 1097

Query: 893  IEHIP---------YTHIAQLSIYEKILKD 913
              +           + +  Q  +Y   L  
Sbjct: 1098 SAYTQTAMAQSMAEHRYDLQYQLYSLALHR 1127


>gi|311281508|ref|YP_003943739.1| DNA helicase II [Enterobacter cloacae SCF1]
 gi|308750703|gb|ADO50455.1| DNA helicase II [Enterobacter cloacae SCF1]
          Length = 732

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 186/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 183 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 239

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 240 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 284

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 285 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 320

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 321 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALEQ----- 361

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 362 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 412

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++       A    S  Q 
Sbjct: 413 RNDDAAFERVVNTPTRGIGDRTLDIVRQTSRDRQLTLWQSCRELLKEKALAGRAASALQR 472

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ +  L         H     ++        +    G      I+ L+E +  T +  
Sbjct: 473 FMELVDALAQETADMPLHVQTDRVIKDSGLWMMYEQEKGEKGQTRIENLEELVTATRQFS 532

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 533 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 592

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 593 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 618

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 619 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEACVEEVRLRAT 661


>gi|209519276|ref|ZP_03268077.1| UvrD/REP helicase [Burkholderia sp. H160]
 gi|209500288|gb|EEA00343.1| UvrD/REP helicase [Burkholderia sp. H160]
          Length = 797

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 118/724 (16%), Positives = 215/724 (29%), Gaps = 168/724 (23%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W +     S                ++ +   L            
Sbjct: 38  GAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTNKAAREMMARLSALLPIDTRGMWIGT 97

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F  L +  L             + + T +       L + L         K  Q      
Sbjct: 98  FHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 157

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++    K   +T         L   Y++  ++  V+DF +L++   +LL        +R
Sbjct: 158 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLR 214

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F 
Sbjct: 215 AHYQARFRHILVDEFQDTNKLQYAWLKLLAGQ----------HNAIFAVGDDDQSIYAFR 264

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +   +   + R        ++I+L  ++RS   IL   +++ +      G +  
Sbjct: 265 GANVGNMRDFEHEFKVR--------NLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 316

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + ++ S  A  I 
Sbjct: 317 TD---------AGHGEPVRVY--------------------------ESATDSQEAGWIV 341

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +I T           +   +I VL R    +  I         +  I+       
Sbjct: 342 EEIRALINTG----------LSRSEIAVLYRSNAQSRTIEHTL----VNAGIAYRVYGGL 387

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        + ++    R    ++   
Sbjct: 388 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSLEQLADAARLYNCSMAAA 447

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
           I   A    S        + ++    Q  S  +    ++ A      + + R G E ++ 
Sbjct: 448 IPYVAGKAGSSLAAFANLVGKMRADTQQMSLPETVEYVVRASGLADFYQNEREGQERLEN 507

Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549
           L E +N            L                                         
Sbjct: 508 LQELVNAAAAFVSEEGYGLDTPARSIPLRPGASAAPELAVATNDPNTVVLDAPDIADPAQ 567

Query: 550 -------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                  L   L             A    V++MTVH AKGLE   VF+      +F H+
Sbjct: 568 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 627

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                    ++    EE  RL+YV +TRA ++
Sbjct: 628 NS----------------------------------AMEADGLEEERRLMYVAITRAKER 653

Query: 662 LIIC 665
           L + 
Sbjct: 654 LYLS 657


>gi|152972801|ref|YP_001337947.1| DNA-dependent helicase II [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|329997488|ref|ZP_08302790.1| DNA helicase II [Klebsiella sp. MS 92-3]
 gi|150957650|gb|ABR79680.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|328539056|gb|EGF65095.1| DNA helicase II [Klebsiella sp. MS 92-3]
          Length = 720

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/553 (18%), Positives = 179/553 (32%), Gaps = 116/553 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNDLDE-------ARFVVNRIKTWQENGGALEQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++       A    S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQASRELLKEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETTDMPLHVQTDRVIKDSGLRAMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMALDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTS 671
             +L +       
Sbjct: 607 MQKLTLTYAETRR 619


>gi|293406309|ref|ZP_06650235.1| recB [Escherichia coli FVEC1412]
 gi|298382045|ref|ZP_06991642.1| exodeoxyribonuclease V beta subunit [Escherichia coli FVEC1302]
 gi|291426315|gb|EFE99347.1| recB [Escherichia coli FVEC1412]
 gi|298277185|gb|EFI18701.1| exodeoxyribonuclease V beta subunit [Escherichia coli FVEC1302]
          Length = 1183

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 309  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 368  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 420  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 470  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 520  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 580  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 637  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 689  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 743  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 790  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 850  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDAITAELNARTLQRLPGDNWRVTSY 909

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 910  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 970  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1026

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123


>gi|71279005|ref|YP_266848.1| DNA-dependent helicase II [Colwellia psychrerythraea 34H]
 gi|71144745|gb|AAZ25218.1| DNA helicase II [Colwellia psychrerythraea 34H]
          Length = 724

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/557 (18%), Positives = 189/557 (33%), Gaps = 117/557 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y+E   +  ++DF +L++  ++L  K      +     Q   HIL+DE QD
Sbjct: 168 ELFVKVYKAYQETCDRAGLVDFAELLLRAHELWLKNPA---LLDHYQQRFGHILVDEFQD 224

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ+  +  L            +   +  VGD+ QSIY + GA+ + + R  +     
Sbjct: 225 TNAIQYAWLTML----------GKARSKVMIVGDDDQSIYGWRGAKIENIERFLQEYD-- 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RSTA+IL   +++     N  G                     
Sbjct: 273 ------DAKTIRLEQNYRSTANILKSANQLICNNNNRMGK-------------------- 306

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +LW             ++ S  + F+ + +       AR IA  I              
Sbjct: 307 -ELW-------TDGEAGEKISIYTAFNEIDE-------ARFIAGRIKQWRDDGGKLD--- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  +I +L R    + L+           ++           +   IKD +A  R 
Sbjct: 349 -------EIAILYRSNAQSRLLEEAL----LQGQLPYRIYGGQRFFERQEIKDALAYMRL 397

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKFANCGISKFQ---- 482
           I +++DD +F  ++ +P        +       R    T+++  Q+       K +    
Sbjct: 398 INNRDDDAAFERVINTPTRGIGNQTLSLVRDAARGLEVTMWQACQQMLKAEQLKGRGAKT 457

Query: 483 --HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTL 537
               I+ I +L               I+     +  + +  G    + I+ L+E +    
Sbjct: 458 ITAFIQLIEQLEDDTTNLDLDQQANFIINHSGLKAMYQAEKGERAAQRIENLNELVTACQ 517

Query: 538 RNEQNSYSSLQE--LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             E +   + ++  L + L        +         V++MT+H+AKGLE P+VF+    
Sbjct: 518 TFESDPELAEEQTPLTAFLTHAALESGESQADEFEAAVQLMTMHSAKGLEFPLVFIAGLE 577

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F  +   +                                       EE  RL YVG
Sbjct: 578 EGMFPSQQSVEEIG----------------------------------RLEEERRLCYVG 603

Query: 655 MTRASDQLIICKHSNTS 671
           MTRA  +L +C   +  
Sbjct: 604 MTRAMSKLYLCHAESRR 620


>gi|191171213|ref|ZP_03032763.1| exodeoxyribonuclease V, beta subunit [Escherichia coli F11]
 gi|300995845|ref|ZP_07181277.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 200-1]
 gi|190908513|gb|EDV68102.1| exodeoxyribonuclease V, beta subunit [Escherichia coli F11]
 gi|300304700|gb|EFJ59220.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 200-1]
 gi|324011667|gb|EGB80886.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 60-1]
          Length = 1180

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 272/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          +  +    L   IT +L+ P+      +      D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FEPQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|282853719|ref|ZP_06263056.1| UvrD/REP helicase [Propionibacterium acnes J139]
 gi|282583172|gb|EFB88552.1| UvrD/REP helicase [Propionibacterium acnes J139]
 gi|314983238|gb|EFT27330.1| UvrD/REP helicase [Propionibacterium acnes HL110PA3]
 gi|315090100|gb|EFT62076.1| UvrD/REP helicase [Propionibacterium acnes HL110PA4]
          Length = 1071

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 149/998 (14%), Positives = 294/998 (29%), Gaps = 139/998 (13%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-----ERFSLLSS 71
                + L    +  +NK    +   G   I +    L  A  +            +    
Sbjct: 135  AARAYQLAAEVIMGLNKAPLAATHMGPTFIAQAVVKLAGAMASHDASPGKVRRADARWRQ 194

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
              L        +  T+    +  D+ + L +  +    +                     
Sbjct: 195  MLL--------DAPTKRGGDRYADIDKWLSRVDEREELL--------------------- 225

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L A Y+  KK+  +++F D ++    L+        +  ++      +L+DE QDTS  
Sbjct: 226  DLVAAYQNLKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSA 282

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q +V+ +L   F    + H     + AVGD  Q+IY + GA    +L   R    +    
Sbjct: 283  QADVLAAL---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---E 336

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            G    ++ L  + R    I+   +               ++  +R   S   +       
Sbjct: 337  GTPAQVLSLATNRRCADQIINAAN--------------VASEELRQTLSSAAESDDHDPA 382

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                     Q     E       ++          +  A  +       TI         
Sbjct: 383  GDRAEVAVGQPLIAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------A 434

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  D  +LVR+  D   +            + V   +   L     I  ++A  R ++ +
Sbjct: 435  RWSDAAILVRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRLLVDR 490

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFAN 475
            +DD +   +L +P    S DD+  +  +                      + + + +   
Sbjct: 491  QDDAAMATLLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRP 550

Query: 476  CGISKFQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
             G  + Q  +K +   I      Q  SP D    I           +   +      D L
Sbjct: 551  GGHERLQCAVKRVCAEIVEVDAHQGDSPDDLVLRIEAITGLIDDIAADDPHRSAARRDHL 610

Query: 530  DEFLNFTLRNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLES 585
            D   N      ++    ++  +++ L         + RA + + + V + TVH AKGLE 
Sbjct: 611  DALWNAIREVRRSDPTMTITGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEW 670

Query: 586  PVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            P+V + D    VF              ++PS        I  P S S  +  + +    +
Sbjct: 671  PLVIIPDMAQGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKE 730

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-----DMVYDSFHNDERV 695
             S   E  RL YV +TRA ++L++  H      K S     Y     DM+   + +    
Sbjct: 731  DSQWAEA-RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGER 789

Query: 696  K--------KIKLTNSINKDEWIAYEWSTHHPENTPLERE------ETIKQLMDEQKIPK 741
                        +   +          S   P      R         +K       +  
Sbjct: 790  PDNVIQAGTPWPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQD 849

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHK 800
            ++  P +   ++   L+ +    +           ++    G   H+ + Q +       
Sbjct: 850  EVALPPRLTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIP 909

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINC 857
              +                       + +R L +  +  A     ++    ++V      
Sbjct: 910  LFDAEEVAELDEENTTQEAVAAEPSGAESRALRS--LCQAFEESRWAGATVLAVEKSFVM 967

Query: 858  PKKDIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 ++ GR+D +     +     + ++KT      +          QLSIY      +
Sbjct: 968  TIGQTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQA 1019

Query: 915  YPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                   +  +  +V   +             A I T 
Sbjct: 1020 RGIDPSRVRAVFHHVGANETISAEPLLDADQVAAILTT 1057


>gi|117619159|ref|YP_854747.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560566|gb|ABK37514.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 723

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/723 (14%), Positives = 228/723 (31%), Gaps = 132/723 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + +            
Sbjct: 30  GAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVIGDGVRGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  ++   L          ++    + + +   ++  LK    +      R         
Sbjct: 90  FHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLIRRVLKALNLDEKHWAPRAVMGYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +           + +   Y+E   ++ ++DF +L++  ++L   +     I
Sbjct: 150 KDEGLRPGDIDLYGDPVTRTYQQIYKTYQETCDRSGLVDFAELLLRAHELWLNKPH---I 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    +IL+DE QDT+ IQ+  +R L  D             +  VGD+ QSIY +
Sbjct: 207 LEHYRDRFQNILVDEFQDTNGIQYAWLRMLAGD----------TGKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R     Q            I L  ++RSTA+IL   + V +      G   
Sbjct: 257 RGAKIENIQRFLTDYQ--------GAETIRLEQNYRSTANILKAANCVIANNAERLGK-- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW             +  S  + F+ + +       AR +
Sbjct: 307 -------------------ELW-------TEGAEGEPISLYAAFNEVDE-------ARFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              + +      +            D  +L R    + ++                    
Sbjct: 334 VGRLKDWKEKGGLL----------ADCAILYRSNAQSRVLEEALMQDAM----PYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
               +   IKD MA  R I ++ DD SF  ++ +P     +  +  +    R + + +++
Sbjct: 380 LRFFERQEIKDAMAYLRLINNRGDDASFERVVNTPTRGIGDRTLEILRNNARDQGQNLWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +             +  +  +  I  L         H    + +     +  +++  G
Sbjct: 440 SAKALLGDKVLTGRAGNAVRGFVDLIDALEEQVSLLPLHQQADIAIQHSGLKAMYLAEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    ++ LDE +    + ++ +    + +L + L        +       + V++MT+
Sbjct: 500 EKSQARVENLDELVTACRQYQRPDELEDMSDLSAFLAHAALESGENQADEYADAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+V LV     +F  +                                    
Sbjct: 560 HSAKGLEFPLVLLVGVEEGMFPSQQST--------------------------------- 586

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             +    EE  RL YVGMTRA ++L IC   +     +         + +         +
Sbjct: 587 -EESGRLEEERRLCYVGMTRAMEKLYICYAESRRIYGREMFHKPSRFIREMPAECLEEIR 645

Query: 698 IKL 700
           ++ 
Sbjct: 646 LRT 648


>gi|331654302|ref|ZP_08355302.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M718]
 gi|331047684|gb|EGI19761.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M718]
          Length = 1183

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 309  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 368  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 420  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 470  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 520  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 580  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 637  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 689  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 743  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 790  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 850  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 909

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 910  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 970  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1026

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1027 YLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123


>gi|218706314|ref|YP_002413833.1| exonuclease V subunit beta [Escherichia coli UMN026]
 gi|300898119|ref|ZP_07116485.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 198-1]
 gi|218433411|emb|CAR14313.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
            UMN026]
 gi|284922756|emb|CBG35844.1| exodeoxyribonuclease V beta subunit [Escherichia coli 042]
 gi|300358177|gb|EFJ74047.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 198-1]
          Length = 1180

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDAITAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|258508010|ref|YP_003170761.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG]
 gi|257147937|emb|CAR86910.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG]
 gi|259649338|dbj|BAI41500.1| DNA helicase [Lactobacillus rhamnosus GG]
          Length = 750

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 138/795 (17%), Positives = 242/795 (30%), Gaps = 161/795 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + K +   P                      + K     +A       E+ +
Sbjct: 66  AAREMRERVGKLV--DPEIARDIWVSTFHALCVRILRRDIDKL-GYNRAFMIADPAEQLT 122

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L+          P K    + I       K +L   Q           TY   ++     
Sbjct: 123 LVKHILADFNLDP-KRYDPKSILGAISGAKNELIDPQ-----------TYSDEQANSPFT 170

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                + A Y++  + +  LDF+DLI+ T  L +K   +        ++  +I +DE QD
Sbjct: 171 KTVAQVYAEYQKRLRSDQALDFDDLIMQTIVLFEKDPET---LGFYQRKFRYIHVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++  L E +            L  VGD  QSIY + GA  + +L  K+   K 
Sbjct: 228 TNEAQYRLVHMLAEGY----------HNLCVVGDADQSIYGWRGANMQNILDFKKDYPK- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST  IL+  + V     N Q  +                   
Sbjct: 277 -------AQVILLEQNYRSTKTILSAANDVIKNNLNRQAKT------------------- 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW       ++    +   + +         S +  A  +   I   +          
Sbjct: 311 --LW------TENATGDKITYYRA--------QSETDEAIFVIRRIEAEMAEHHR----- 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  I            I           D   I+D +A  R 
Sbjct: 350 ----KYGDFAILYRTNAQSRAIEEAF----VKSNIPYKMVGGHKFYDRKEIRDALAYFRL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKF 481
           +++  DD+SF  ++  P        + K+         ++ E          +       
Sbjct: 402 VVNPADDMSFNRIVNEPKRGIGNTSVAKLEAFANQHDWSLLEAAANAELSPISGKARGNL 461

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
               K I  L    +  +  +    IL          +    E     + L+E L+ T  
Sbjct: 462 AKFGKMIQRLGQRRKDLNVTEMMQAILDDSGYLGTLRAANTLEAETRVENLEELLSVTQG 521

Query: 539 N------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E        + ++EL             +  EV +MT+H AKGLE PVVFLV 
Sbjct: 522 FDARYQPENEDSDIFVDFLAELALLSDQD--EVEEDAQEVTLMTLHAAKGLEFPVVFLVG 579

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F                                        + +   EE  RL Y
Sbjct: 580 MEEGLFPLS----------------------------------RAAMDEGELEEERRLAY 605

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA  +L +                +  M+Y    N+   + I+  +    D   A 
Sbjct: 606 VGITRAKQKLYLT-------------NAYARMLYGQRQNNPASRFIEEIDPELLDISGAA 652

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
           +  +  P     +R  +              +S        P  + P+     GKT+ E+
Sbjct: 653 QPKSDIPFINRTDRAFSSP------------YSRHPETTGTPVTVKPAPTTGAGKTSWEA 700

Query: 773 LLS-DNQTFNRGLII 786
               +++ +  G ++
Sbjct: 701 GDKVEHRKWGIGTVV 715


>gi|315293808|gb|EFU53160.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 153-1]
          Length = 1180

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/877 (14%), Positives = 275/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPEG 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KKS+       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      +      D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|85374356|ref|YP_458418.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
 gi|84787439|gb|ABC63621.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
          Length = 776

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/646 (16%), Positives = 196/646 (30%), Gaps = 118/646 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y+   K+    DF DL+++  ++ +K      +  +  +   ++L+DE QDT+ 
Sbjct: 195 AQFYELYQTRLKELNACDFGDLLLHMLNIFRKH---RDVLEQYQKRFKYVLVDEYQDTNA 251

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+  +R L ++           + +  VGD+ QSIYS+ GAE   +LR ++        
Sbjct: 252 VQYLWLRLLAQE----------RKNICVVGDDDQSIYSWRGAEVANILRFEKDFP----- 296

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL     + +      G +                     L
Sbjct: 297 ---GAKVIKLEQNYRSTPHILAAASGLITANSERLGKT---------------------L 332

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W +V +    +       W    +           ARR+   I  +              
Sbjct: 333 WTEVNAGEKVR---VIGVWDGPEE-----------ARRVGEEIERLEREGAPLD------ 372

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               ++ +LVR +  T               ++      F   +   I+D +A  R I  
Sbjct: 373 ----EVAILVRAQYQTREFEDRF----IQIGLNYRIIGGFRFYERAEIRDALAYLRVIAQ 424

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH------ 483
            +DDL+F  +   P        + K+    R     +     + A+      +       
Sbjct: 425 PQDDLAFERIYNQPKRGLGAKTLEKMHQHARRTGLPLAAASLQLADSDELPARASNTIGG 484

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           ++K        ++   P +    +L          +    E    L+         E+  
Sbjct: 485 LMKQFLHWREQSEKTEPAELLRQVLDESGYTAMLENEKTAEAKGRLENLSELARAMEE-- 542

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               + L   LE     +    + +  +V IMT+H AKGLE   VFL      VF  +  
Sbjct: 543 ---YETLGDFLEHVALVMDNDANPDEEKVTIMTMHAAKGLEFNHVFLPGWEEGVFPSQR- 598

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                           +     ++ EE  RL YV +TRA  +  
Sbjct: 599 -------------------------------ALDEGGLASLEEERRLAYVAITRARRRCT 627

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           I   +N    ++   +    +           +    T            WS        
Sbjct: 628 ILHAAN----RRIYGQWTSSIPSRFIEELPDEQVESETTLTGGASLWRANWSESDDPFAH 683

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
           + R++  +         + L S              S      +  
Sbjct: 684 VARDKPDRSAQRGPGWQRALESGYDTKQLAVKESRRSAASFAARPR 729


>gi|323966801|gb|EGB62232.1| exodeoxyribonuclease V [Escherichia coli M863]
 gi|327251567|gb|EGE63253.1| exodeoxyribonuclease V, beta subunit [Escherichia coli STEC_7v]
          Length = 1180

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 275/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARNEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER------EETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T    +    +       E   +++          +  
Sbjct: 847  PQDAAGLRTCIEALCDEDIAWQTAQTGDNQPWQFNDVFTAELNAKMLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      +      D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|62181502|ref|YP_217919.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. SC-B67]
 gi|62129135|gb|AAX66838.1| exonuclease V, beta chain [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. SC-B67]
 gi|322715985|gb|EFZ07556.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. A50]
          Length = 1181

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 122/876 (13%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                 +   + ++           V          +    P    W    +S       S
Sbjct: 467  TFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIEHI---------PYTHIAQLSIYEKILKD 913
                    +           + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAVMQAHRYDLQYQLYTLALHR 1120


>gi|332184910|ref|ZP_08386659.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
 gi|332014634|gb|EGI56690.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
          Length = 765

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 119/650 (18%), Positives = 205/650 (31%), Gaps = 125/650 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y+E  +     DF DL+++   +LK       +     Q   +I++DE QDT+ 
Sbjct: 185 AELYRQYQERLRSVNACDFGDLLLHMLTILKTH---RDVLEHYQQRFRYIMVDEYQDTNS 241

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+  +R L +          + + +  VGD+ QSIYS+ GA+ + +LR +R        
Sbjct: 242 VQYLWLRLLAQ----------ARKNIACVGDDDQSIYSWRGAQVENILRFERDFP----- 286

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I L  ++RST  IL     V +      G +                     L
Sbjct: 287 ---GAKVIRLEQNYRSTPHILGAASGVIANNGGRLGKT---------------------L 322

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W             ++      +D   +       ARR+   I     + T         
Sbjct: 323 W-------TELDVGEKVRVLGVWDGPEE-------ARRVGEEIEAARRSGT--------- 359

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               DI +LVR +  T               +       F   +   I+D +A  R +  
Sbjct: 360 -SYGDIAILVRAQHQTREFEDRFIA----IGLPYRIVGGFRFYERAEIRDALAYLRVVNQ 414

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++  P     +  + KI    R +   +           +          +
Sbjct: 415 PSDDLAFERIVNVPKRGLGDKALAKIHQLARADGLPLTLAAARILDTDELTPQARRSLGN 474

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
           +I  I     +A+     +    +L        + +    E     + L E +      E
Sbjct: 475 LIGDIARWRDMARDLPHAELARQMLDESGYTAMYQAEKSAEAAGRLENLTELVRAMEDYE 534

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L + LE     + R       EV IMT+H AKGLE   VFL      +F  
Sbjct: 535 S--------LGAFLEHVSLVMDRDGDQREPEVTIMTIHAAKGLEFDTVFLAGWEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                  I      + EE  RL YV +TRA  
Sbjct: 587 QR--------------------------------AIDEGGTRSLEEERRLAYVAITRARR 614

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           + II   +N     +     W   +   F  +   + I    S+   E +     + H +
Sbjct: 615 KAIILHAAN-----RRIYGQWTSSLPSRFVGELPPEHIDSETSMTGGESLWRANWSEHAD 669

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                   T +    ++    +   P++             +  KG+ +L
Sbjct: 670 PFANVARGTGRGPGWQRAAAGQNGLPVRPARIVESRAPSVGLGQKGRDDL 719


>gi|226365847|ref|YP_002783630.1| ATP-dependent DNA helicase [Rhodococcus opacus B4]
 gi|226244337|dbj|BAH54685.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4]
          Length = 1120

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 141/1063 (13%), Positives = 270/1063 (25%), Gaps = 214/1063 (20%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
              +  + +      +LW L +  VS  +  +       + T    A   Q A      ++
Sbjct: 134  LPIEPSATLLS-ETELWQLAHRVVSSWDGDLDTDRNPASVTEAVLALAGQLAEHLVEPDD 192

Query: 65   RFSL---LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                   L     T    P++            DL + L         +           
Sbjct: 193  LREAHTELDKLVHTLPAGPRQRGGP------GKDLLDILDTQHRRVELL----------- 235

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                       L     +  ++   LDF   +     +         +          +L
Sbjct: 236  ----------PLVQRLTDTLRREGALDFGSQMSLAARVAADHPE---VGVAERTRFRVVL 282

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   Q  ++ SL      G+        L AVGD  QSIY + GA    + R  
Sbjct: 283  LDEYQDTGHAQRVLLSSLFGGGLDGELA------LTAVGDPMQSIYGWRGASAANLPRFA 336

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                      G     +EL  S+R+  + L + +   +                  R+  
Sbjct: 337  TDFP---MANGDPAPTLELLTSWRNPPEALALANVASASLRERG------VAVSMLRARP 387

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V+L        +                             +A  I+       
Sbjct: 388  QAVPGDVRLALTADVVQER--------------------------EWVADRIAE------ 415

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             +++   R        VL+R+  D   I  + R       + V       L     + D+
Sbjct: 416  QYADAASRGEDPPTAAVLIRRNADAAPIAEVLRS----RGLPVEVVGLGGLLHTPEVADV 471

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            +A+ R +       + V ML    +     D+  +  +  E      Y    A    +  
Sbjct: 472  IAMLRVVADPMAGSAAVRMLTGARWQIGAADLTALSRRASELAIGTGYGTTGAVTDSAAL 531

Query: 482  QHVI---------------------------------------KYIHELIHIAQFCSPHD 502
               +                                         +  L          +
Sbjct: 532  ADAVGEALPGEHAEQAGLADALADPGPAERYSQVGYARITAVAAELASLRERIGQ-PLTE 590

Query: 503  FFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                +        +  +R           + LD F +        + +++  L++ L   
Sbjct: 591  LVAEVERVLGIGIEAQARTRQSARGSAGREHLDAFADVVAGYANRTSATVTGLLAFLSAA 650

Query: 558  PPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                          + + V+++TVH+AKGLE  VV +    + VF  +      +     
Sbjct: 651  ESVEKGLAPGEVEVDPHRVQVLTVHSAKGLEWEVVAVSHLTAGVFPSRTASGSWLGAVGE 710

Query: 614  DDPGIPIWIPQ------------------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              P +     +                   K     V      L     +E  RL YV +
Sbjct: 711  LPPSLRGDRARPGESADGVPVLELENLYDRKDLEEAVKAHKSALAARRLDEDRRLFYVAL 770

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWY-------------------DMVYDSFHNDERVK 696
            TR    L    H    +  +    + +                   D+   +   +E+  
Sbjct: 771  TRTERVLFASGHHWAESGTEPKGPSEFLTELRDTVTGEEHEGIGVVDLWAPAPEPEEQNP 830

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPL-----------------EREETIKQLMDEQKI 739
                  S                    L                 E  E     +D    
Sbjct: 831  LTSTPKSAVWPRDPLGLRREAVERGAALVVAALRNAGKQSPAGEDEDPENWAADVDALLA 890

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTN--------LESLLSDNQTFNRGLIIHKLLQ 791
             ++  +  + ++  P  L+ S +                      N    RG   H  ++
Sbjct: 891  EREARANARAEVVLPGQLSVSQLVELEADPDALAARLRRPLPFPPNPLARRGTAFHAWVE 950

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851
                     R+   T     +  L  A +      +    L++  + +  +  + +EV  
Sbjct: 951  ---------RRFGATRLLDLDE-LPGAADTGAGPDADLATLQDAFLRSPWADRNPTEV-- 998

Query: 852  SGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
                       ++ GRID +         + ++KT        E      + QL+ Y   
Sbjct: 999  EVPFETSVAGTVLRGRIDAVFTDPDGGWTVIDWKTGAEPSAANEKAV---VMQLAAYRLA 1055

Query: 911  LKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
              +    P + +     YV   +     +     A A +    
Sbjct: 1056 WAELMDVPIERVRAAFHYVRTGRTIAPDRLPGADALARLLRTA 1098


>gi|314923610|gb|EFS87441.1| UvrD/REP helicase [Propionibacterium acnes HL001PA1]
          Length = 1071

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 151/997 (15%), Positives = 296/997 (29%), Gaps = 139/997 (13%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-----ERFSLLSS 71
                + L    +  +NK    +   G   I +    L  A  +            +    
Sbjct: 135  AARAYQLAAEVIMGLNKAPLAATHMGPTFIAQAVVKLAGAMASHDASPGKVRRADARWRQ 194

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
              L        +  T+    +  D+ + L +  +    +                     
Sbjct: 195  MLL--------DAPTKRGGDRYADIDKWLSRVDEREELL--------------------- 225

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L A Y+  KK+  +++F D ++    L+        +  ++      +L+DE QDTS  
Sbjct: 226  DLVAAYQNLKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSA 282

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q +V+ +L   F    + H     + AVGD  Q+IY + GA    +L   R    +    
Sbjct: 283  QADVLAAL---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---E 336

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            G    ++ L  + R    I+ V +               ++  +R   S   +       
Sbjct: 337  GTPAQVLSLATNRRCADQIINVAN--------------VASEELRQTLSSAAESDDHDPA 382

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                     Q     E       ++          +  A T+       TI         
Sbjct: 383  GDRAEVAVGQPLIAPEGNRRGEVTVAAYPDWVKECQACADTLVEAKERGTI--------A 434

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  D  +LVR+  D   +            + V   +   L     I  ++A  R ++ +
Sbjct: 435  RWSDAAILVRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRLLVDR 490

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFAN 475
            +DD +   +L +P    S DD+  +  +                      + + + +   
Sbjct: 491  QDDAAMATLLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDPDDVEIHLSDAVMEGRP 550

Query: 476  CGISKFQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
             G  + Q  +K +   I      Q  SP D    I           +   +      D L
Sbjct: 551  GGHERLQCAVKRVCAEIVEVDAHQGDSPDDLVLRIEAITGLIDDIAADDPHRSAARRDHL 610

Query: 530  DEFLNFTLRNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLES 585
            D   N      ++    ++  +++ L         + RA + + + V + TVH AKGLE 
Sbjct: 611  DALWNAIREVRRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEW 670

Query: 586  PVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            P+V + D    VF              ++PS        I  P S S  +  + +    +
Sbjct: 671  PLVIIPDMAQGVFPSTSTPDNFASEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKE 730

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-----DMVYDSFHNDERV 695
             S   E  RL YV +TRA ++L++  H      K S     Y     DM+   + +    
Sbjct: 731  DSQWAEA-RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGER 789

Query: 696  K--------KIKLTNSINKDEWIAYEWSTHHPENTPLERE------ETIKQLMDEQKIPK 741
                        +   +          S   P      R         +K       +  
Sbjct: 790  PDNVIQAGTPWPVFADVGHGLIDNASRSVDDPGQADRVRAWWTDADALLKDARRHIDLQD 849

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHK 800
            ++  P +   ++   L+ +    +           ++    G   H+ + Q +       
Sbjct: 850  EVALPPRLTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIP 909

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINC 857
              +                       + +R L +  +  A     ++    ++V      
Sbjct: 910  LFDAEEVAELDEENTTQEAVAAEPSGAESRALRS--LCQAFEESRWAGATVLAVEKSFVM 967

Query: 858  PKKDIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 ++ GR+D +     +     + ++KT      +          QLSIY      +
Sbjct: 968  TIGQTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQA 1019

Query: 915  YPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                   +  +  +V   +             A I T
Sbjct: 1020 RGIDPSRVRAVFHHVGANETISAEPLLDADQVAAILT 1056


>gi|325300614|ref|YP_004260531.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
 gi|324320167|gb|ADY38058.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
          Length = 753

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 95/677 (14%), Positives = 188/677 (27%), Gaps = 126/677 (18%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTL--------AKYLNAHYEEAKKKNCVLDFEDLI 153
             Q      ++     + + +                + + A Y E  +++  +DF+DL+
Sbjct: 139 AVQSRISNAKNHLILPEAYAANAELYQSDLEAKMPSLRDIYARYWERCRQSDAMDFDDLL 198

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           + T  L ++      +R K       +L+DE QDT+  Q  ++  LTE            
Sbjct: 199 VYTYLLFERFPE---VREKYASRFRFVLVDEYQDTNFAQHRIVWQLTE----------KS 245

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           R +  VGD+ QSIYSF GA    +L+             ++  + +L  ++RST  I+  
Sbjct: 246 RRVCVVGDDAQSIYSFRGANIDNILKFTEEY--------KEARLFKLEQNYRSTQTIVNA 297

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + + +           S                             +   +     + +
Sbjct: 298 ANSLIAKNSEQIRKEVFS----------------------------EKAKGEPIPVFNAY 329

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
             + +          +A  I  +                  D  +L R    + +     
Sbjct: 330 SDVEEGDI-------VANQIVKLAAGG---------AYGYDDFAILYRTNAQSRIFEEAL 373

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
           R       +               IKD++A  R +++  D+ +F  ++  P     +  +
Sbjct: 374 R----KRGLPYRIYGGLSFYQRKEIKDIVAYFRLVVNPNDEEAFKRIINFPARGIGDTTL 429

Query: 454 FKICTQRHE-TETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
            KI         +++        Y    A    +K Q     I      A   + ++   
Sbjct: 430 NKIIDAATRANVSLWTVLNEPLAYGLSLAKNTCAKLQGFRDLIAGFAEDAVRKNAYEVGQ 489

Query: 506 LILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE---QNSYSSLQELISELEQYPP 559
            I+       +       E     + ++E +N         +   +    L   L +   
Sbjct: 490 DIVRRSGIIAEIYRDRTPENLSRQENVEELINGMHDFCASREEEGNERVSLSDYLSEISL 549

Query: 560 TIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                        + +MT+H+AKGLE   VF+V     +F        +           
Sbjct: 550 LTDLDSEEGEGARITLMTIHSAKGLEFKNVFVVGLEENLFPSPMASGSY----------- 598

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                     EE  RL YV +TRA +   +    +     K   
Sbjct: 599 -----------------------RQLEEERRLFYVAVTRAEEHCFLSFAKSRFKYGKMEF 635

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
            +    + D      ++       +  K                 L +            
Sbjct: 636 CSPSRFLRDIDACYLKLPLDGGVPASPKRVMSDAPRFAKPEPPRVLRKVSLSPAPEGMPS 695

Query: 739 IPKKLFSPIKNDINEPY 755
                   +   I    
Sbjct: 696 SKPGAAVEVGQTIEHER 712


>gi|117918924|ref|YP_868116.1| DNA-dependent helicase II [Shewanella sp. ANA-3]
 gi|117611256|gb|ABK46710.1| ATP-dependent DNA helicase UvrD [Shewanella sp. ANA-3]
          Length = 722

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 189/551 (34%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     +     +   HIL+DE QDT+ IQ
Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L                +  VGD+ QSIY + GA+ + + R  R          
Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLRDFPT------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L  ++RS  +IL   + + +      G                      +LW 
Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERLGK---------------------ELW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + + +  S    F+ + +       AR I   I++                 
Sbjct: 310 ------TDEADGEPISLYCAFNEMDE-------ARFIVGRINDWYEKGG----------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            ++          +   IKD M   R I ++ 
Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +  T R +  T+++   +       A    S  +  +
Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRSTARQQELTLWQACLRLLDEKVLAGRAASAVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541
             I  L    Q  + +     ++ A   +  + +  G +     + L+E +      E  
Sbjct: 463 DLIVTLQEETQDMALYRMTDTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL + L        +    A  + V++MT+H+AKGLE  +VF+      +F  
Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                      +    +E  RL YVGMTRA +
Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 609 KLYITYAESRR 619


>gi|321159776|pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd
          Length = 647

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 100/581 (17%), Positives = 185/581 (31%), Gaps = 116/581 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+  + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +L +          K         + +         +++
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLR 647


>gi|26992028|ref|NP_747453.1| DNA-dependent helicase II [Pseudomonas putida KT2440]
 gi|24987163|gb|AAN70917.1|AE016735_10 DNA helicase II [Pseudomonas putida KT2440]
          Length = 728

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 118/721 (16%), Positives = 229/721 (31%), Gaps = 132/721 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   Q S  +             + ++ + L   +        
Sbjct: 33  GAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGMWVGT 92

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--K 109
           F              + L   F       Q+ +I + + +   D ++   +    FI  +
Sbjct: 93  FHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMRELGLDEQKWPARQAQWFINGQ 152

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +      +       L   + +   YE+A ++  V+DF +L++   DL +       +
Sbjct: 153 KDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPG---L 209

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   H+L+DE QDT+ +Q+  +R L               +L AVGD+ QSIY +
Sbjct: 210 LEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAR----------GGDSLMAVGDDDQSIYGW 259

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                 +I L  ++RST  IL   + + +      G   
Sbjct: 260 RGAKIENIHQYTADFP--------DAEMIRLEQNYRSTGGILKAANALIANNSGRLGK-- 309

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW             +  +  + ++   +       AR +
Sbjct: 310 -------------------ELW-------TDMGEGEPLTLYAAYNEHDE-------ARYV 336

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
             TI +++                 +I +L R    + ++           +I       
Sbjct: 337 VETIESLVKQGNAR----------NEIAILYRSNAQSRVLEEAL----LRERIPYRIYGG 382

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IK+ MA  R I  + +D +   ++  P     E  +  I    RH   +++E
Sbjct: 383 QRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWE 442

Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519
            + +       K          I+ I  L         H      +         Q+   
Sbjct: 443 AMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTIEQSGLITYHQEEKG 502

Query: 520 RFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
             G   ++ L+E ++     E     + L  L + L              + + +++MT+
Sbjct: 503 EKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTL 562

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VFLV     +F HK   +                                
Sbjct: 563 HSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG----------------------------- 593

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA  QL++                    V +      +  +
Sbjct: 594 -----RLEEERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVR 648

Query: 698 I 698
           +
Sbjct: 649 L 649


>gi|257453952|ref|ZP_05619228.1| ATP-dependent DNA helicase Rep [Enhydrobacter aerosaccus SK60]
 gi|257448617|gb|EEV23584.1| ATP-dependent DNA helicase Rep [Enhydrobacter aerosaccus SK60]
          Length = 679

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 114/679 (16%), Positives = 224/679 (32%), Gaps = 126/679 (18%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
                S  L      + N+   E  +      + +   +++ I      +T    +    
Sbjct: 109 MDAEDSKRLLMDLMVRDNMSGAESRELVGKAIKMISDWKNDLIPPEKAADTLTDPEDM-- 166

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              L   L   YE   +    +DF+DLI+    LL++      +R K    I ++L+DE 
Sbjct: 167 ---LFATLYQLYERNLRAYNAVDFDDLIVMPTRLLQEN---TQVRDKWQNRIRYLLVDEY 220

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+I+ L                   VGD+ QSIY++ GA+P+ +   +    
Sbjct: 221 QDTNTAQYELIKLLVG----------VQPRFTVVGDDDQSIYAWRGAKPENMALLQEDFP 270

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           K          +++L  ++RST+ IL   + V +  E+       S              
Sbjct: 271 K--------LKVVKLEQNYRSTSRILHAANSVITNNEHLFEKKLWSDK------------ 310

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
           G  +L   +  ++D                          A R+A  I          ++
Sbjct: 311 GHGELIRIINCRNDDD-----------------------EAERVAKEI---------ITH 338

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             +     +D  VL R      ++    R L+    I    +          IKD+M+  
Sbjct: 339 KLRNANDWQDYAVLYRSNFQARMLEAQLRQLQ----IPYKLSGGTSFFARSEIKDIMSYL 394

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGI 478
           R IL+ EDD +F+ ++ +P        + K+    +    ++                  
Sbjct: 395 RLILNPEDDSAFLRIINTPKRGLGPASLEKLGLFAQEHQVSLLMASGHSGLTHVLPKKAS 454

Query: 479 SKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEF 532
            + +    +I            P      ++          S           ID ++  
Sbjct: 455 GELKEFADFIERYTQELYQHPDPVPLVKQMIDETGYIDLVRSEAKTPQQEKIRIDNIETL 514

Query: 533 L----NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                N   R + +   ++  +I +L       ++    N N+V +MT+H AKGLE   V
Sbjct: 515 YASIQNLINRADDDDDRTIDAVIRKLVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           +++    ++  HK+                                    +   + EE  
Sbjct: 575 YIMGLEEELLPHKNS-----------------------------------IIAESIEEER 599

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           RL+YVG+TRA  +L +   +      +    T    + +          +K + + ++ +
Sbjct: 600 RLMYVGITRARKELTMTMAAQRRAGGQMKTTTPSRFIDELPAEHIDAPGMKKSAAAHQPK 659

Query: 709 WIAYEWSTHHPENTPLERE 727
             A ++  +       +  
Sbjct: 660 KTADDYLANIQALLKSKAA 678


>gi|89891413|ref|ZP_01202919.1| DNA helicase [Flavobacteria bacterium BBFL7]
 gi|89516444|gb|EAS19105.1| DNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 775

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 107/725 (14%), Positives = 226/725 (31%), Gaps = 130/725 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEA 140
           K +   +   K   +  ++   ++  I +R  FN   + ++   +       +   Y E 
Sbjct: 126 KEMGLDKDVYKYKQIASRISSMKNSLITVRAYFNDADLQEADAMARRPRFGDIYKEYVER 185

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
             K   +DF+DL++ TN+LL +      +  K      +IL+DE QDT+  Q+ ++++L+
Sbjct: 186 CFKAGAMDFDDLLLKTNELLNRFPE---VLAKYQNRFQYILVDEYQDTNHSQYLIVKALS 242

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           + F          + +  VGD+ QSIY+F GA    +L  +R  +              L
Sbjct: 243 DKF----------QNICVVGDDAQSIYAFRGANINNILNFQRDYE--------GVKAYRL 284

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST +I+   + +    +        +                            +
Sbjct: 285 EQNYRSTKNIVEAANSIIDKNKTKLDKVVWTA---------------------------N 317

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              P+        D+           R +A +I         F N  ++ +      +L 
Sbjct: 318 NDGPKIIVHRLMSDAEEG--------RYVAGSI---------FENKMQKQLGNDQFAILY 360

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +  +    R       I               +KD++A  R I++ +D+ S   +
Sbjct: 361 RTNAQSRAMEDALR----KRDIPYRIYGGLSFYQRKEVKDVLAYLRVIVNPKDEESLKRI 416

Query: 441 LKSPLFNFSEDDIFKICTQRHET--------ETVYEYIQKFANCGISKFQHVIKYIHELI 492
           +  P        + K+               E +       A+   +K ++ +  I    
Sbjct: 417 INYPARGIGATTMDKLIVAAKHYDRSIFEVIEHIDRIDIGIASSTKTKLKNFVMMIKSFQ 476

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN---EQNSYSS 546
            + +  S  +    ++       +       E I   + ++E LN        ++    +
Sbjct: 477 ALEETQSVFELTEYVIKKSALINELKKDGSQEGISKVENIEELLNGMRDFVEGQKEVDEA 536

Query: 547 LQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
              L   LE         +  +  + V +MT+H AKGLE P V++V     +F       
Sbjct: 537 RGSLAEFLEDVALATDLDNEKDTDDRVSLMTIHLAKGLEFPYVYIVGMEEDLFPSGMSMN 596

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                                         YV +TRA  Q  + 
Sbjct: 597 TREELEEERRL----------------------------------FYVALTRAEHQAYLT 622

Query: 666 K----HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
                +           R   ++          +   +  +++    W   + S      
Sbjct: 623 YTLSRYRWGKLVDAEPSRFITEIDDQYLEYTTPMDDYRYKSALTDHLWDEPDKSKLRQRK 682

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
               +  ++ +  ++Q    +   P  +  N        T++         ++  +  F 
Sbjct: 683 PVSGKPPSVSRPSEDQIRKLRKIRPSSSSNNSKSSGFEGTLE-------PGMIVSHGRFG 735

Query: 782 RGLII 786
           RG ++
Sbjct: 736 RGTVV 740


>gi|237806835|ref|YP_002891275.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187]
 gi|237499096|gb|ACQ91689.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187]
          Length = 1175

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 124/826 (15%), Positives = 259/826 (31%), Gaps = 121/826 (14%)

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F+DL+ N    L   +    +  +I ++    +IDE QDT  +Q+++  +L         
Sbjct: 346  FDDLLTNLARAL-NSERGVLLAERIREQYPVAMIDEFQDTDPLQYQIFSTLY-------- 396

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
             H+     + +GD KQ+IY+F GA+    ++ K+      T          L  +FRST 
Sbjct: 397  AHNPECGFYMIGDPKQAIYAFRGADIFTYMQAKQQVAAHYT----------LQTNFRSTD 446

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            +++T V+ +F+      G        I   + R        + + +       C P + +
Sbjct: 447  ELVTAVNALFAH----SGAPFIYQQDIPFEAVRAKGKKAGFVLQGLPQTALQCCFPLEGT 502

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMI-GTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   +   +    +A   A  I   + G     +    + ++  DI VLVR  ++  
Sbjct: 503  G-----EVSGAAYQQRMALAAAAQIHTWLVGAQQQQATLDGKPLRPNDIAVLVRSGREAA 557

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            ++    R        SV  ++R  +      +D+  L    L+ +D++     + + L  
Sbjct: 558  VMQQALRECGIA---SVYLSNRESVFAQAVAQDVARLLEACLNPQDEMLIRAAMATGLQG 614

Query: 448  FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            ++   + ++    ++ ET++E   +        +++       L  + Q+   +     +
Sbjct: 615  WTVSQLARL----NDDETLWEQTVEHIRLAGELWRNR----GILPMLRQWLFWYQIPERL 666

Query: 508  LGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRA 564
            L    G +Q            L E L      L  E      L E   +        +  
Sbjct: 667  LADTNGERQLTDVL------HLGELLQTAASTLNGEHALLRWLLERCHQPNGDADEQQLR 720

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              +    V+I+T+H +KGL+  +V L    +   +         MP  +   G+ + +  
Sbjct: 721  LDSERQRVQIVTIHKSKGLQYGLVLLPFICAYRGN--------DMPRYHTGNGVQLDLTG 772

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
            S           +   +    E  RLLYV +TR      +       N K   +      
Sbjct: 773  S-------EHAWEKAAEERLAEDLRLLYVALTRGVFVTWLGLADLKINSKTKAKDDRPAA 825

Query: 685  VYDSFHNDERVK--------------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            +     ND                    +                   P   P  R  + 
Sbjct: 826  LDYLLKNDSDSALTVRFRQWLQQLNNHDRAAEVAEIAFPQTPYHEISVPLPAPQARHFSG 885

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
            +   + +       +   +       L     D + +     + S  +  + G  +H LL
Sbjct: 886  QLERNWRVTSYSALTVSHSTYQPTPPLPVVVSDEEPQAPRFDVFSFPRGAHAGTFLHSLL 945

Query: 791  QVIFTLPEH----KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAM 841
            + +    +     K           +    P      L   +T++L + +     ++   
Sbjct: 946  EDLDFGADDAFCRKWITEHLQGVQLSHDWQPEPWQPVLEQWLTQILNSELFPGLSLSQLT 1005

Query: 842  SCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISISQQ 876
                 SE+     +       +                         + G ID +   Q 
Sbjct: 1006 PQQCLSEMEFLLPLAPLSAPALNRCLAAGDALSANAPPLAFNEVQGMLKGFIDLVFEHQG 1065

Query: 877  NIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
              ++ +YK+++       +             +  Q  +Y   L  
Sbjct: 1066 RFYVVDYKSNYLGDNPAAYQQDAMAQAMLEHRYDVQYQLYTLALHR 1111


>gi|2625021|gb|AAC46278.1| DNA helicase II [Serratia marcescens]
          Length = 720

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 119/722 (16%), Positives = 226/722 (31%), Gaps = 132/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L     +    ++    + + +   LK  +K    +  +   R         
Sbjct: 90  FHGLAHRLLRAHHLEANLPQDFQILDSDDQLRLLKRIIKALNVDEKQWPPRQAMWYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +             +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 150 KDEGLRPQHVETYNNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---I 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   ++L+DE QDT+ IQ+  IR L                +  VGD+ QSIY +
Sbjct: 207 LNHYRERFTNVLVDEFQDTNSIQYAWIRLLAG----------GNSNVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R  +               I L  ++RST++IL   + + +  +   G + 
Sbjct: 257 RGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILKAANTLIANNDGRMGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +       AR +
Sbjct: 308 --------------------LW-------TEGGEGEPISLYCAFNELDE-------ARFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     D  +L R    + ++            +       
Sbjct: 334 VNRIKTWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
               +   IKD +A  R I ++ DD +F  ++ +P     +  +  +    R    T+++
Sbjct: 380 QRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRQAARDRQLTLWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG---RQQFIS 519
             ++            S  Q  I+ +  L H       H     ++         +Q   
Sbjct: 440 ATRELMQDKVLAGRAASALQRFIELVESLAHETADMPLHVQTDRVIRDSGLFIMYEQEKG 499

Query: 520 RFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
             G   I+ L+E +  T +   Q+ Y  L  L + L        +    A  + V++MT+
Sbjct: 500 EKGQARIENLEELVTATRQFSYQDEYQDLMPLQAFLSHAALEAGEGHADAYQDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPLVFIVGMEEGMFPSQMSLDEGG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA  +L +          K         + +         +
Sbjct: 591 -----RLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVR 645

Query: 698 IK 699
           ++
Sbjct: 646 LR 647


>gi|324005623|gb|EGB74842.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 57-2]
          Length = 1180

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 126/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KKS+       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
            +    N++          + ++    L   IT +L+ P+      +      D   E+  
Sbjct: 967  QVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|323180256|gb|EFZ65808.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 1180]
          Length = 1170

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 296  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 354

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 355  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 406

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 407  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 456

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 457  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 506

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 507  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 566

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 567  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 623

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 624  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 675

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 676  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 729

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 730  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 776

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            ++  +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 777  VELAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 836

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   +++          +  
Sbjct: 837  PQDAAGLCTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARMLQRLPGDNWRVTSY 896

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 897  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 956

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 957  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1013

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1014 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1073

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1074 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1110


>gi|71899705|ref|ZP_00681857.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
 gi|71730500|gb|EAO32579.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
          Length = 723

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/629 (16%), Positives = 199/629 (31%), Gaps = 121/629 (19%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +S    +   + +   Y+E   +  ++DF +L++  ++LL+       +   
Sbjct: 149 RRPEHIQPESHDDWIETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPA---LLTH 205

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  ILIDE QDT+ IQ+  +R L           +    +FAVGD+ Q+IY + GA
Sbjct: 206 YRSRFREILIDEFQDTNAIQYAFVRVLA----------NDTGHIFAVGDDDQAIYGWRGA 255

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V    +               I L  ++RS+A+IL   + + +   +  G      
Sbjct: 256 KVEHVQHFLKDFPN--------VQTIRLEQNYRSSANILDAANAIIAHNPDRIGKR---- 303

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW             +     + ++ + +       AR I   
Sbjct: 304 -----------------LW-------TESGVGESIDLYAAYNEIDE-------ARYIVER 332

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 +I VL R    +     + +                  
Sbjct: 333 ARQWVRDGG----------SYGEIAVLYRSNAQSRAFEEVLQSEHM----PYRVYGGMRF 378

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F  ++ +P+    E  + ++    R +   +++   
Sbjct: 379 FERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIGERTLDEVRHLARTQGLALWDAAM 438

Query: 472 KFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                        +     +  + +L          +    +L   + RQ +        
Sbjct: 439 ACTQSTTLTARARNALASFLNLLQQLALETNQMDLAERIDHMLQRSELRQHWKKEARGSL 498

Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575
                 + LDE ++   R            + EL + L             A    V++M
Sbjct: 499 DAESRQENLDELVSVASRFVLPQNDEDTPIMTELDAFLSYACLESGDGQVQAGEEGVQLM 558

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P+VFLV   + +F        H                            
Sbjct: 559 TLHSAKGLEFPLVFLVGLENGLFPSARCLDEHG--------------------------- 591

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    EE  RL YVG+TRA  +LI+          K N       + +   +    
Sbjct: 592 -------RLEEERRLAYVGITRARHKLILSYAQARRIHGKDNYNVPSRFLREIPQDLLHE 644

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPL 724
            +  +  S       A   +    +  P+
Sbjct: 645 VRPTIQVSHQPPLGAAQRPAHDERDAAPI 673


>gi|145301020|ref|YP_001143861.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853792|gb|ABO92113.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 723

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/723 (15%), Positives = 229/723 (31%), Gaps = 132/723 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + +  + Q       
Sbjct: 30  GAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVLGSMQRGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  ++   L          ++    + + +   ++  +K    +      R         
Sbjct: 90  FHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLIRRVIKALNLDEKHWAPRAVMSYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +           + +   Y+E   ++ ++DF +L++  ++L   +     I
Sbjct: 150 KDEGLRPGDIDLYGDPVTRTYQQIYKTYQETCDRSGLVDFAELLLRAHELWLNKPH---I 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    +IL+DE QDT+ IQ+  +R L  D             +  VGD+ QSIY +
Sbjct: 207 LEHYRDRFQNILVDEFQDTNGIQYAWLRMLAGD----------SGKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R     Q            I L  ++RSTA+IL   + V +      G   
Sbjct: 257 RGAKIENIQRFLTDYQ--------GAETIRLEQNYRSTANILKAANCVIANNSERLGK-- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW              Q S  + F+ + +       AR +
Sbjct: 307 -------------------ELW-------TEGAEGDQISLYAAFNEVDE-------ARFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              + +      +            D  +L R    + ++                    
Sbjct: 334 VGRLKDWKEKGGLL----------ADCAILYRSNAQSRVLEEALMQDAM----PYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IKD MA  R I ++ DD SF  ++ +P     +  +  +    R +   +++
Sbjct: 380 LRFFERQEIKDAMAYLRLINNRGDDASFERVVNTPTRGIGDRTLEILRTNARDQGLNLWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +   N         +  +  +  I  L         H    + +     +  +++  G
Sbjct: 440 SAKGLLNDKVLTGRAGNAVRGFVDLIDALEEQVGMLPLHQQADIAIQNSGLKAMYLAEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    ++ LDE +    +  + +    + +L + L        +       + V++MT+
Sbjct: 500 EKSQARVENLDELVTACRQYNRPDELEEMSDLSAFLAHAALESGENQADEYADAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+V LV     +F  +                                    
Sbjct: 560 HSAKGLEFPLVLLVGVEEGMFPSQQST--------------------------------- 586

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             +    EE  RL YVGMTRA ++L IC   +     +         + +         +
Sbjct: 587 -EESGRLEEERRLCYVGMTRAMEKLYICYAESRRIYGREMFHKPSRFIREMPAECLEEIR 645

Query: 698 IKL 700
           ++ 
Sbjct: 646 LRT 648


>gi|89091856|ref|ZP_01164811.1| ATP-dependent DNA helicase Rep [Oceanospirillum sp. MED92]
 gi|89083591|gb|EAR62808.1| ATP-dependent DNA helicase Rep [Oceanospirillum sp. MED92]
          Length = 669

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/652 (15%), Positives = 211/652 (32%), Gaps = 127/652 (19%)

Query: 68  LLSSFFLTQKFTPQKNIITQEINKK----SPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              +      F+   +  T+ + K       +  +++   Q++    ++   T +     
Sbjct: 96  EYKTLGFKPGFSIFDDQDTKALLKDLMLHHNEDTDQVDFVQNQISNWKNEMLTPEEALVQ 155

Query: 124 LASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                  LA      YE+  +    +DF+DLI+    L  +      +  +    + ++L
Sbjct: 156 AQLPQDILAARAYEVYEQHLRAYNAVDFDDLILVPVRLFTEHP---NVLERWQNRLRYLL 212

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+L Q+ +++ L                L  VGD+ QSIY++ GA P+ + + +
Sbjct: 213 VDEYQDTNLSQYRLVKLLVGHRGA----------LTVVGDDDQSIYAWRGARPENLNQLE 262

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +              +++L  ++RST+ IL   + + +   +    +  S   +      
Sbjct: 263 QDYP--------SLKVVKLEQNYRSTSRILKAANTLIANNPHVYEKTLWSEMGM------ 308

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            G    V                                +      RIA  I+++     
Sbjct: 309 -GDPIRV----------------------------IHTKNEDGECERIAMEITDLH---- 335

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                 +  +Q +D+ +L R      L+    +  +    +    N          IKDL
Sbjct: 336 -----LRNGVQFRDMAILYRGNFQARLLEMKLQHFQ----VPYKLNGGTSFFARAEIKDL 386

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI-- 478
           M   + +++ +DD +F+ ++  P        + K+         +++    +        
Sbjct: 387 MGYLKVLVNPDDDNAFLRIINLPRREIGPSTLQKLGQYSVDRQISMFNACSELGLEQAMP 446

Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VL 529
                + +    ++  +        P      ++              +E +       +
Sbjct: 447 ANAVERLRRFCDWMQHIYRQCHSGDPIAAINEMIRDIDYEGWIAQNSSSEAMAEKRMQNV 506

Query: 530 DEFLNFTLR-----NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
              ++          E +  + +QE I+ L       ++    + N V++MT+H +KGLE
Sbjct: 507 WFLMDSLKATLERLQEDDPDAGIQEAINRLMLIDMLDRQEEEDDSNRVQLMTLHASKGLE 566

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            P VFL+    ++  H                                      ++    
Sbjct: 567 FPHVFLMGMEEELLPH-----------------------------------RNSIETDNI 591

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
           EE  RL YVG+TRA   L I          +         + +    D  V+
Sbjct: 592 EEERRLAYVGITRAKQCLTITLAKQRKQYGEVMDCMPSRFLDELPPEDLEVE 643


>gi|309379709|emb|CBX21698.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 670

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  K    +DF+DLI 
Sbjct: 126 KEAVFKAQHQISLWKNDLKTPEDVLQTASNIWEQQTARVYASYQETLKSYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +++L  ++RSTA IL + 
Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVVKLEQNYRSTARILKIA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 285 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 312

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 313 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 360

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 361 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 416

Query: 453 IFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 417 LGKLNTYAHEHECSLYEAAQNEEALAALNNTNRQHLQAFMDMFGNYRAKAETGDAGEFIN 476

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + E +++  R       ++ EL   +       
Sbjct: 477 SLLKEIGYENHLMQNEEGKAGEIKWRNVGELVSWFARKGGEDGKNIIELAQTVALMTLLD 536

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 537 GKD-EEEADAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 575

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  +L +        +        
Sbjct: 576 ---------------DSIEEGNVEEERRLMYVGITRAKRRLTLTHCVKRKKQGIWQFPEP 620

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 621 SRFIGEMPQED 631


>gi|218701534|ref|YP_002409163.1| exonuclease V subunit beta [Escherichia coli IAI39]
 gi|218371520|emb|CAR19358.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli IAI39]
          Length = 1180

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 272/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          +  +    L   IT +L+ P+      +      D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FEPQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|301027507|ref|ZP_07190844.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 69-1]
 gi|300395015|gb|EFJ78553.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 69-1]
          Length = 1180

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 133/971 (13%), Positives = 296/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + RS+          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRSIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S       +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARKIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDAITAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          + ++    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      ++     D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|300936256|ref|ZP_07151189.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 21-1]
 gi|300458581|gb|EFK22074.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 21-1]
          Length = 1180

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 272/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          +  +    L   IT +L+ P+      +      D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FEPQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|306812276|ref|ZP_07446474.1| exonuclease V subunit beta [Escherichia coli NC101]
 gi|305854314|gb|EFM54752.1| exonuclease V subunit beta [Escherichia coli NC101]
          Length = 1180

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 132/971 (13%), Positives = 297/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      ++ S  
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KKS+       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKSDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +   +   E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDVLTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          + ++    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      +      D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYILALHR 1120


>gi|161506463|ref|YP_001573575.1| exonuclease V subunit beta [Salmonella enterica subsp. arizonae
            serovar 62:z4,z23:-- str. RSK2980]
 gi|160867810|gb|ABX24433.1| hypothetical protein SARI_04666 [Salmonella enterica subsp. arizonae
            serovar 62:z4,z23:--]
          Length = 1181

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 129/971 (13%), Positives = 285/971 (29%), Gaps = 144/971 (14%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNP-------TILKKAQTLQQASQTQCIEERF 66
            E I   +  +       +++  +L   +G            K  + +   +Q +    + 
Sbjct: 223  EQILARINQVKQQWCEAVSELEALFESSGIDRRKFNRGNQAKWIEKITAWAQEETKNYQL 282

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                  F  +    +                + L         +                
Sbjct: 283  PEALGKFSQRFLDERTKAGGVTPRHPLFVAIDNLLSEPLSIKDLV--------------L 328

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                  +     + K++   L F+D++   +  L+  +    +   I       +IDE Q
Sbjct: 329  TRALSEIRETVAQEKRRRGELGFDDMLSRLDAALR-SESGEALAAAIRTRFPVAMIDEFQ 387

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT   Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +     
Sbjct: 388  DTDPQQYRIFRRIWR--------HQPDTALLLIGDPKQAIYAFRGADIFTYMKARSEVSA 439

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
              T          L  ++RS   ++  V+K+FS   +A    +   + ++          
Sbjct: 440  HYT----------LDTNWRSAPGMVNSVNKLFSQMNDAFMFRDIPFSPVKFAQRNQSLQF 489

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN- 365
             V          +    P    W    +S       S +A+  A  I + +         
Sbjct: 490  KV----------NDVPQPAMTLWLMEGESCGSGDYQSYMAQVCATQIRDWLRAGQTGDAL 539

Query: 366  ----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                   R ++A DI VLVR R++  LI      L      SV  ++R  + + L  +++
Sbjct: 540  LMNGDASRPVRASDISVLVRSRREAALIRDALTLL---AIPSVYLSNRDSVFETLEAQEM 596

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            + + + +++ E + +    L + +   +  DI  +    +  + V E    +        
Sbjct: 597  LWVLQAVMAPERENTLRSALATSMMGLTALDIETLNNDENAWDAVVEEFDGYRQMWHK-- 654

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LR 538
            + V+  +  L       S  +    +L    G ++            + E L      L 
Sbjct: 655  RGVMPMLRAL------MSARNIAENLLATAGGERRLTDIL------HISELLQEAGSQLE 702

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +E      L + I E +    + +    ++ + V+I+T+H +KGLE  +V+L        
Sbjct: 703  SEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIVTIHKSKGLEYSLVWLPFITHFRV 762

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              +                      ++    +   + I+  +     E  RLLYV +TRA
Sbjct: 763  QDQAFYHDR-------------HSYEAVLDLSHAEESIELAEAERLAEDLRLLYVALTRA 809

Query: 659  SDQLIICKH------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
                 +         S+   E   +Q     ++      D    +  +     +D     
Sbjct: 810  VWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGEPMDAAGLRACIEALCGEDIVCRT 869

Query: 713  EWST--HHPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPS 760
              +T     +       E   + +          +              D+     +   
Sbjct: 870  PGNTDNDRWQIAAASHTELSARTLQRLPYDSWRVTSYSGLQQRGHSVAQDLIPRLDIEAV 929

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
             +    +    +     +  + G  +H L + +        +           +      
Sbjct: 930  GVGEAAEALTMTPHHFPRGASPGTFLHSLFEELDFTQPVNPQWVQEKLELSGFETRWEPM 989

Query: 821  YKNLLLSITRLLENPM---MTTAMSCDSYSEV----SVSGKINCPKKDIIIS-------- 865
                L S+  +  N     ++     +   E+     +   +   + D +I         
Sbjct: 990  LTRWLDSVLHVALNETGVSLSMLTEREKQVEMEFYLPIVQPLTAGELDALIRRYDPLSAG 1049

Query: 866  --------------GRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                          G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWLGEDSAAYTQTAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|126664112|ref|ZP_01735105.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38]
 gi|126623826|gb|EAZ94521.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38]
          Length = 778

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 107/675 (15%), Positives = 209/675 (30%), Gaps = 136/675 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y E   K+  +DF+DL++ TN+LL    +   +  K      +IL+DE QDT+  
Sbjct: 180 EIYQQYVERCFKSGAMDFDDLLLKTNELLN---LFPDVLAKYQDRFRYILVDEYQDTNHS 236

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ ++R+L++ F            +  VGD+ QSIY+F GA    +L  ++  +      
Sbjct: 237 QYLIVRALSDRF----------HNICVVGDDAQSIYAFRGANINNILNFQKDYEN----- 281

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +  L  ++RS+ +I+   + V    +        ++               +++ 
Sbjct: 282 ---VQMYRLEQNYRSSKNIVEAANNVIDKNKTKLDKIVWTSN---------DDGPKIKVH 329

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +    +                           R +A TI         F    +  +
Sbjct: 330 RSLTDGEEG--------------------------RFVAATI---------FEQKMQNQM 354

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +  +    R       I               IKD++A  R +++ 
Sbjct: 355 LNGQFAILYRTNAQSRAMEDALR----KRDIPYRIYGGLSFYQRKEIKDVLAYLRLVINP 410

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCG-------ISKFQH 483
           +D+ + V ++  P     +  + K+    +    +++E ++              +K   
Sbjct: 411 KDEEALVRVINYPARGIGDTTVEKLTVAANHYKRSIFEVMEHIDKIDLKLNSGTKAKLND 470

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  I     I +          +       Q+       E    I+ ++E LN      
Sbjct: 471 FVTMIKSFQVINENQDAFFLTDHVTKKTGLVQELKKDGTPEGIARIENIEELLNGIKDFT 530

Query: 541 QNSYS------SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
           +          +L E + ++     T     + + + V +MT+H AKGLE P VF+V   
Sbjct: 531 EGQKEIDGARGALAEFMEDVALA--TDLDKDTGDDDRVALMTIHLAKGLEFPHVFIVGLE 588

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                          +S  EE  RL YV 
Sbjct: 589 EDLFPSAMSLNT----------------------------------RSELEEERRLFYVA 614

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +TRA  Q  +    +     K         + +             +    K       +
Sbjct: 615 LTRAEHQAYLTYAQSRYRWGKLVDSEPSRFIEEINDQYLEYLNPVDSGYRYKPVMNIDVF 674

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                    L +             PK L             L P + ++     +++ L
Sbjct: 675 GDIDKSKLRLAKPTAG-------TPPKYLTQDEPVSSANIRRLKPVSSNSGSSNVVDANL 727

Query: 775 SDNQTFNRGLII-HK 788
                   G I+ H+
Sbjct: 728 ------AVGNIVMHE 736


>gi|325142627|gb|EGC65018.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 961-5945]
          Length = 671

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 111/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW ++      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKIV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + + +++  R       ++ EL   +       
Sbjct: 478 SLLEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|311278235|ref|YP_003940466.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae SCF1]
 gi|308747430|gb|ADO47182.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae SCF1]
          Length = 1179

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 112/874 (12%), Positives = 263/874 (30%), Gaps = 129/874 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 +           L        +       K++   L F+D++   +  L+  +  
Sbjct: 308  LFDAVEALLAAPPSLDDLVISRAMVEIRDAVAREKQRRGELGFDDMLSRLDKALQG-ESG 366

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I       +IDE QDT   Q+ + R +                L  +GD KQ+I
Sbjct: 367  EALAGAIRSRFPVAMIDEFQDTDPQQYRIFRRIWR--------QQPETALLLIGDPKQAI 418

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    +R +          G   +   L  ++RS   ++  V+++F + EN   
Sbjct: 419  YAFRGADIFTYMRAR----------GDVAAHYTLDTNWRSAPGVVQSVNRLFGLSENPFM 468

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
              E     +   ++        +L          +  P    W    + +        +A
Sbjct: 469  FREIPFLPV--NAAAKNHGLRFEL--------QGETQPAMSLWLMPGNGVGVGDYQHFMA 518

Query: 347  RRIAYTISNMIGTDTIFSNGKKR-----VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            +  A  I + +           R      +QA DI VLVR R +  L+      L     
Sbjct: 519  QLCAGQIRDWLSAGQRGEALLWRDSASRPVQASDITVLVRNRLEASLVRDALNAL---AI 575

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      ++L+ + + +L+ E +      L + +F  +  D+  +     
Sbjct: 576  PSVYLSNRDSVFATPEAQELLWVLQAVLAPERESLLRSALATAMFGLTARDLEALN---- 631

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                + E          + ++ + +    +  +    S       +L  + G ++     
Sbjct: 632  ----LDEQAWDDVVEEFAGYRQLWQQRGVMAMLRALMSARHIAENLLATQGGERRLTDIL 687

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT---IKRAHSANHNEVRIMTVH 578
                   + E L       ++ ++ ++ L+ ++          +    ++ + V+I+T+H
Sbjct: 688  ------HISELLQEAAGQLESEHALVRWLVVQIAGPDDGASGQQMRLESDKHLVQIVTIH 741

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE  +V+L          +                       +    +   + ++ 
Sbjct: 742  KSKGLEYSLVWLPFIAHYRKQEQAFYHDRD-------------SFAAVLDLHNGQESLEL 788

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------- 683
             +     E  RLLYV +TRA     +     +S        T                  
Sbjct: 789  AEAERLAEDLRLLYVALTRAIWHCSLGIAPLSSRRSDKAAETDLHQSALGRLVQNGEPKD 848

Query: 684  ---MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
               +        +    + +    +   W A   +    +   + R       +      
Sbjct: 849  AAGLEQCLRALCDEHIALYIPELPDAGRWQALADALPALQARDMRRRIVDDWRVTSYSGL 908

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
            ++    +  D+     ++ + +         +     +  + G  +H L + +    +  
Sbjct: 909  QQRGHSVAQDLLPRLDIDAAGVGLVASEPALTPHQFPRGASPGTFLHSLFEEM-DFTQPV 967

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK 854
               ++     +N   +  +    L   +  +L+ P+      ++     D   E+     
Sbjct: 968  AAEWVQEKLARNG--FDGQWTPVLTQWLEGILQTPLTGAGVSLSQLSDKDKQVELEFYLP 1025

Query: 855  INCPKKDI--------------------------IISGRIDQISISQQNIFIFEYKTHHH 888
            I    +                            ++ G ID +       ++ +YK++  
Sbjct: 1026 IESLLEPQQLDALIRRHDPLSAGCPPLDFRRVSGMLKGFIDLVFRHDGRYYLLDYKSNWL 1085

Query: 889  VPQEIEHIP---------YTHIAQLSIYEKILKD 913
                  +           + +  Q  +Y   L  
Sbjct: 1086 GESHEAYTRPAMEQAMQSHRYDLQYQLYSLALHR 1119


>gi|171059448|ref|YP_001791797.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
 gi|170776893|gb|ACB35032.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
          Length = 848

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 98/603 (16%), Positives = 191/603 (31%), Gaps = 135/603 (22%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               +D     K   +          +   YE+  ++  V+DF +L++ + +L++     
Sbjct: 188 IASSKDDGKRPKDLPTDDGQARTMVEIYQAYEDQCQREGVVDFAELMLRSYELMRDHPE- 246

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             IR    +   HIL+DE QDT+ +Q+  ++              +   +FAVGD+ QSI
Sbjct: 247 --IREHYQRRFRHILVDEFQDTNRLQYLWLKMFAGTPGALAGREPAA--VFAVGDDDQSI 302

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+F GA+   +   +R  + R         +I+L  ++RS  +IL   + + +      G
Sbjct: 303 YAFRGAQVGNMSDFEREYRVR--------QVIKLERNYRSFGNILDSANALIAHNSRRLG 354

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +  +           G    V+++                          + +S    A
Sbjct: 355 KNLRTE---------AGPGEPVRIF--------------------------ESTSDFAEA 379

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +   +  +              +   +  +L R    + +I         +  +    
Sbjct: 380 QWLLEELQQLHRGG----------MARSETAILYRSNAQSRVIESAL----FNAGMPYRV 425

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  +   IK  +A  R   +  DD SF+ ++  P        +  +    R    +
Sbjct: 426 YGGLRFFERAEIKHALAYLRLTENPNDDTSFLRVVNFPARGIGARSVELLQDAARASGRS 485

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNE 524
           +Y+ +        +K       +  L    +  +  +    +L A      + +   G +
Sbjct: 486 LYQSVGALGGAAGTKLAGFTALVDRLRDATRGLTLREIIERMLDASGLINFYRTEKEGQD 545

Query: 525 VIDVLDEFLNFTLRN-----------------------------------------EQNS 543
            I+ L+E +N                                              +  +
Sbjct: 546 RIENLEELVNAAEAFVTIEGFGKDAVALPVDETAPGTIAAPLPGEPEAVAAVDLLPDAET 605

Query: 544 YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              L  L + L             A  + V++MTVH+AKGLE   VF+      +F H++
Sbjct: 606 GEILSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHSAKGLEFDAVFITGLEEGLFPHEN 665

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                            I        EE  RL+YV +TRA  +L
Sbjct: 666 SLNS-----------------------------ISAGGNEGLEEERRLMYVAITRARQRL 696

Query: 663 IIC 665
            I 
Sbjct: 697 YIS 699


>gi|85703443|ref|ZP_01034547.1| DNA helicase II, putative [Roseovarius sp. 217]
 gi|85672371|gb|EAQ27228.1| DNA helicase II, putative [Roseovarius sp. 217]
          Length = 779

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 110/645 (17%), Positives = 201/645 (31%), Gaps = 117/645 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   ++   +DF DL+++   + +K D    +  +  +   +IL+DE QDT++ 
Sbjct: 195 ALYRQYQTRLRELNAVDFGDLLLHVVTIFQKHDD---VLRQYQRWFRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               ++I L  ++RST  IL     V +   +  G                      +LW
Sbjct: 296 --GAAVIRLEQNYRSTPHILAAASGVIAGNRDRLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++     ++D   +       AR I   + +M            R  
Sbjct: 333 -------TEAKEGEKVRLIGHWDGEEE-------ARWIGEEVESMRRG-----TRGMRPY 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              ++ +LVR                    ++          + L I+D MA  R ++S 
Sbjct: 374 SLDEMAILVRASHQMRAFEDRF----LTIGLAYRVIGGPRFYERLEIRDAMAYFRLVVSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGISKFQHV 484
            DDL+F  ++ +P     +    KI  T R     + E        +     G ++ +  
Sbjct: 430 ADDLAFERIVNTPKRGLGDKAQQKIQVTARQNGVPLVEGARILLEDKGITGKGAAELRRF 489

Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           I  +     +      S  +   +IL      + +      E    ++ L E +      
Sbjct: 490 IDGLARWGRMVGDAEFSHIELAEMILDESGYTEMWQLDKTPEAPGRLENLKELVKALEGF 549

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +      +  ++ +MT+H AKGLE P VFL      +F 
Sbjct: 550 EN--------LQGFLEHVSLIMDNEAGEDGEKITLMTLHAAKGLEFPAVFLPGWEDGLFP 601

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +       +                                   EE  RL YVG+TRA 
Sbjct: 602 SQRSMDESGVRG--------------------------------LEEERRLAYVGITRAE 629

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +   I    N     +   +     + +       V                    +   
Sbjct: 630 EVCTISFAGNRRVYGQWQSQMPSRFIDELPEAHVEVLTPPGLYGGAYGAAAGSGIESRAA 689

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
           E          +      + P    S  ++ + E   ++  T+  
Sbjct: 690 EANVYNSPGWRRLQARGGERPMSQPSEARHRVIEAEAISAHTVGE 734


>gi|223040423|ref|ZP_03610697.1| ATP-dependent DNA helicase PcrA [Campylobacter rectus RM3267]
 gi|222878273|gb|EEF13380.1| ATP-dependent DNA helicase PcrA [Campylobacter rectus RM3267]
          Length = 698

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 101/600 (16%), Positives = 202/600 (33%), Gaps = 121/600 (20%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
              + NI T  +  +  + K  L   +D               K           +   Y
Sbjct: 128 KGFESNIATPVLASEISNFKNSLLSVED---AAHHAAIEIDEHKFKDGYYARLANIYKLY 184

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           EE    N ++DF+DL+  +  +L + +    +  +I Q   +I++DE QDT+ +Q+++++
Sbjct: 185 EEYLAANNLVDFDDLLCLSYKILDEDEA---LAREISQRYAYIMVDEYQDTNDLQYKLLK 241

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L            +   +  VGD+ QSIY + GA+ + +L  K           +   +
Sbjct: 242 KLCL----------THENIAVVGDDDQSIYGWRGAKIENILNFKDRF--------KDVKV 283

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  ++RST+ IL   +++     N  G    ST                         
Sbjct: 284 IRLEQNYRSTSQILRAANELIDHNRNRLGKELKSTK------------------------ 319

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                  +  +     D   +         ++A  I  ++G+           + A +I 
Sbjct: 320 ----EGGEDVALIESDDETMESL-------KVAKRIKKLLGSG----------VAASEIA 358

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +L R    +  +       K    I           +   +KD+++  R + ++ DD S 
Sbjct: 359 ILYRINALSRSLEDGLNKEK----IPYKMVGGVKFYERAEVKDVISYLRLVANENDDFSL 414

Query: 438 VCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE----LI 492
             ++  P     +  + KI         +++E I           + ++  + E    L 
Sbjct: 415 KRVINRPKRGLGKISLAKIEKIAFENKFSLFEAICALDESDKELSKKIVSALDEFAANLK 474

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYS-SLQEL 550
            + +  S ++    +      ++ + S   G+E +  +DEF        +   S S++E 
Sbjct: 475 ELKECGSAYELIDKLEAKFGIKKYYESLPDGSERVANIDEFYAMIKDQIKQDPSFSIEEF 534

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           ++E+                 + IM++H +KGLE   +F++      F            
Sbjct: 535 LNEIALQSEQDNI----GGEAISIMSIHASKGLEFEHLFVIGLEEGFFPLLGDGS----- 585

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                             EE  RL YV +TRA   L +   ++ 
Sbjct: 586 --------------------------------DIEEERRLAYVAITRAKKTLGLSYANSR 613


>gi|168463851|ref|ZP_02697768.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
 gi|195633206|gb|EDX51620.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
          Length = 1181

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 125/874 (14%), Positives = 270/874 (30%), Gaps = 123/874 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
              +  +TV E    +        + V+  +  L       S  +    +L    G ++  
Sbjct: 634  DENAWDTVVEEFDGYRQIWHK--RGVMPMLRAL------MSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L          +                      ++    +   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAEES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYDSF 689
            I   +     E  RLLYV +TRA     +         S+   E   +Q     ++    
Sbjct: 787  IALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGE 846

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
              D    +  +    ++D       +T     +       E   + +          +  
Sbjct: 847  PMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + +    +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV----S 850
                +           +          L ++  +  N     ++     +   E+     
Sbjct: 967  PIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLP 1026

Query: 851  VSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTHHH 888
            ++  +   + D +I                       G ID +   +   ++ +YK++  
Sbjct: 1027 IAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWL 1086

Query: 889  VPQEIE---------HIPYTHIAQLSIYEKILKD 913
                              + +  Q  +Y   L  
Sbjct: 1087 GEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|227432451|ref|ZP_03914438.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351772|gb|EEJ42011.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 749

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 98/551 (17%), Positives = 177/551 (32%), Gaps = 118/551 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A Y+   ++   +DF+DLI++T DL K+   +  +  +   +  ++ +DE QDT+
Sbjct: 172 VAEVYAAYQAELRRAQSVDFDDLIMSTIDLFKQ---APDVLERYQNQFEYLHVDEYQDTN 228

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++  L +            R L  VGD  QSIY + GA    +L  ++       
Sbjct: 229 DAQYTIVNLLAK----------RSRNLAVVGDADQSIYGWRGANMNNILNFEKDYP---- 274

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   + L  ++RST +IL   + V +        S                     
Sbjct: 275 ----DAHTVLLEQNYRSTQNILDAANAVINNNNERIDKS--------------------- 309

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW              + ++        +       A  +   I           + +++
Sbjct: 310 LW-------TENGKGDKITYYRAQTERDE-------ANFVLANIQK---------SRQEK 346

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D  VL R    +  I            +           +   I D+M+    + 
Sbjct: 347 NAAYSDFAVLYRTNAQSRGIEEAL----MKANMPYTMVGGHKFYERKEILDIMSYMNLMT 402

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------EYIQKFANCGISKFQ 482
           +  D+ +F  ++  P        I ++    +     Y       E   +      SK  
Sbjct: 403 NPADNAAFERVVNEPKRGIGATSINRLRDFANRMNLSYMGAIENIELAPEITAKAASKLI 462

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
              + +H L    +  +  +   L +     RQ+   +   E    ++ L+EFL+ T   
Sbjct: 463 QFAEMMHNLRQQTELLTVTELAELAMTKSVYRQKLAEKNDPESQGRLENLEEFLSVTKEF 522

Query: 540 EQ----NSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTG 594
           +     +   S+  +   L                  V +MT+H AKGLE PVVFLV   
Sbjct: 523 DSKYNPDDPESVDPMTDFLSSTALMSDLDDFEEGDGAVTLMTLHAAKGLEFPVVFLVGME 582

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                        +  +  EE  RL YVG
Sbjct: 583 EGIFPLS----------------------------------RAMMDDNQLEEERRLAYVG 608

Query: 655 MTRASDQLIIC 665
           +TRA  +L + 
Sbjct: 609 ITRAMKKLYLT 619


>gi|283835413|ref|ZP_06355154.1| exodeoxyribonuclease V, beta subunit [Citrobacter youngae ATCC 29220]
 gi|291068585|gb|EFE06694.1| exodeoxyribonuclease V, beta subunit [Citrobacter youngae ATCC 29220]
          Length = 1181

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 131/973 (13%), Positives = 305/973 (31%), Gaps = 136/973 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKY---VSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            +E+    ++ +                 +   +ET      K  +  Q     +      
Sbjct: 215  DETLASRHEQILARINQIKQQWRNAVDGLDGLLETSGIDRRKFNRGNQGKWIEKISAWAQ 274

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                S+ L            QE  K      +          ++ D+  T +    T A 
Sbjct: 275  EETQSYQLPDALEKFSQRFLQERTKAGGVTPQH--PLFVAIDELLDQPLTLRDLVITRAL 332

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              +   +       K++   L F+D++   +  L+  +    +   I       +IDE Q
Sbjct: 333  AEIRTAVAEE----KRRRGELGFDDMLSRLDAALR-SESGDALATAIRTRFPVAMIDEFQ 387

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT   Q+ + R + +        H +   L  +GD KQ+IY+F GA+    ++ +     
Sbjct: 388  DTDPQQYRIFRRIWQ--------HQAETALLLIGDPKQAIYAFRGADIFTYMKAR----- 434

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                 G+  +   L  ++RS   ++  V+ +FS  ++A    E   + ++          
Sbjct: 435  -----GEVSAHYTLDTNWRSAPGMVNSVNTLFSQMDDAFMFREIPFSPVK---------- 479

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN- 365
            +    + +      +  P    W    +S       + +A+  A  I + +         
Sbjct: 480  SADKNQSLRFVLHGETQPAMTMWLMEGESCGVGDYQNYMAQVCATQIRDWLKAGHSGDAQ 539

Query: 366  ----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                   R ++A DI VLVR R++  L+      L      SV  ++R  + + L  ++L
Sbjct: 540  LVSGKTSRPVRASDISVLVRSRQEAALVRDALTQL---AIPSVYLSNRDSVFETLEAQEL 596

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            + + + +++ E + +   +L + +   +  DI  +    +  E  ++ + +  +     +
Sbjct: 597  LWVLQAVMTPERENTLRSVLATSMMGLNAQDIEAL----NNDENAWDAVVEEFDGYRQIW 652

Query: 482  --QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT--- 536
              + V+  +  L       +       +L    G ++            + E L      
Sbjct: 653  HKRGVMPMLRAL------MTTRQIAENLLATAGGERRLTDIL------HISELLQEAGSQ 700

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            L +E      L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    + 
Sbjct: 701  LESEHALVRWLSQHILEPDSNASSQQLRLESDKHLVKIVTIHKSKGLEYPLVWLPFITNF 760

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                +                       +    +   + ++  +     E  RLLYV +T
Sbjct: 761  RVQDRAFYHDRSSFE-------------AVLDLSDARESVELAEAERLAEDLRLLYVALT 807

Query: 657  RASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK---DEWIA 711
            R+     L +        +KK +       +       E +    L  +I     D+   
Sbjct: 808  RSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLVQKGEPMDAAGLRGAIEALCCDDIAC 867

Query: 712  YEWSTHHPENTPLEREETI---KQLMDEQKIPKKLFSPI----------KNDINEPYILN 758
               +    E   + +  +     +++          +              D+     ++
Sbjct: 868  LTPNQPDGERWQVAQAASGELSARMLQRTPGDSWRVTSYSGLQQRGHGIAQDLIPRLDID 927

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
             + +      +  +     +  + G  +H L + +                    +    
Sbjct: 928  AAGVGEVIAESGLTSHQFPRGASPGTFLHSLFEDLDFTQPVDPHWVEEKLALGGYEAHWE 987

Query: 819  KEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCPKK--------------- 860
                  L ++ +   N     ++   + +   E+     I+ P                 
Sbjct: 988  PVLTQWLNTVLQAPLNETGVSLSQLSAREKQVEMEFYLPISQPLMASRLDALIRQYDPLS 1047

Query: 861  -----------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTH 900
                         ++ G ID +   Q   ++ +YK++        +           + +
Sbjct: 1048 AGCPALDFMQVRGMLKGFIDLVFRHQGRYYLLDYKSNWLGEDSAAYTQQAMASAMQAHRY 1107

Query: 901  IAQLSIYEKILKD 913
              Q  +Y   L  
Sbjct: 1108 DLQYQLYTLALHR 1120


>gi|332159820|ref|YP_004296397.1| DNA-dependent helicase II [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607637|emb|CBY29135.1| ATP-dependent DNA helicase UvrD/PcrA [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664050|gb|ADZ40694.1| DNA-dependent helicase II [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862567|emb|CBX72721.1| DNA helicase II [Yersinia enterocolitica W22703]
          Length = 720

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 119/700 (17%), Positives = 223/700 (31%), Gaps = 144/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D  ++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I     +   +IL+DE QDT+ IQ+  IR L  D             +  VGD+ 
Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGD----------RSNVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + + R  +               I L  ++RST++ILT  + + +  + 
Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILTAANTLIANNDG 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RMGKN---------------------LW-------TDGAQGEPISLYCAFNELDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR +   I                     D  +L R    + ++            + 
Sbjct: 330 --ARFVVNRIKAWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD +A  R I ++ DD +F  ++ +P     +  +  I    R  
Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVIRQTARDR 433

Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +        A    S  Q  ++ +  L H       H     ++        
Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLAHETADMPLHVQTDRVIRDSGLWSM 493

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G +    ++ L+E +N T +   Q+    L  L + L        +    A  + 
Sbjct: 494 YEQEKGEKGQARVENLEELVNATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        EE  RL YVG+TRA  +L +C   +  
Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619


>gi|148273735|ref|YP_001223296.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831665|emb|CAN02634.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 816

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 118/720 (16%), Positives = 217/720 (30%), Gaps = 134/720 (18%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF-LTQ 76
           ++ WP     ++  NK  +   E     + + ++ +  ++            +  F  TQ
Sbjct: 78  REAWPSQILAITFTNKAAAEMRERVESLLGQASEGMWISTFHSACVRILRREAEAFGFTQ 137

Query: 77  KFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            FT   +  ++ + K+     +       +        K+++  +    F  T      A
Sbjct: 138 NFTIYDSADSRVLIKRIIKQLDADTLGFTVSSVSGRISKLKNELSDADTFARTANFNDPA 197

Query: 131 KY----LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           +     +   Y  +       DF+DLI  T  L +       +     +   H+L+DE Q
Sbjct: 198 EAMFVEIFRQYTRSLASANAFDFDDLIGQTVYLFR---AFPKVAALYQRRFRHVLVDEYQ 254

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS-----------PRTLFAVGDEKQSIYSFHGAEPK 235
           DT+  Q+ +IR LT           +             +L  VGD  QSIY+F GA+ +
Sbjct: 255 DTNHAQYSLIRELTRAVAPEDVPVDTRMSTNGMGGIDGASLTVVGDSDQSIYAFRGADIR 314

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +   +R   +          ++ L  ++RST +ILT  + V S   + +          
Sbjct: 315 NITEFERDFPQS--------KVVLLEQNYRSTQNILTAANAVISNNFDRKDKK------- 359

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                         LW  +                          S    A+ +A  I  
Sbjct: 360 --------------LWTSIGDGDKIVGF--------------TGYSGHDEAQFVADEIQK 391

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           +    T             +I V  R    T  +  +         +           + 
Sbjct: 392 LHEEGTA----------YSEIAVFYRTNAQTRALEEIL----IRSAVPYRIMGGTKFYER 437

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA 474
             IKD MA    + +  D L+   +L +P           +         T  E +++ +
Sbjct: 438 AEIKDAMAYLVAVANPADVLALRRILNTPKRGIGPATETALANFAESHGVTFREAMRRAS 497

Query: 475 N-CGISKFQHVIKYIHELIHIA----------QFCSPHDFFTLILGAKKGRQQFISRFGN 523
                 K    I  +  ++                S  D  T +L      Q   +    
Sbjct: 498 ELGLGPKVTQAILALSRMLDEVALLLDPDRPEGRTSVGDLVTTLLEKSGLVQALRASKDA 557

Query: 524 E---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           +     + ++E +  T    +N+    L + ++E+             +   V +MT+HT
Sbjct: 558 QDEARAENVEELVAVTKEFSRNNPEGQLVDFLTEVSLVAAAD--ELDDSSGTVSLMTLHT 615

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFL      +  H+        P                             
Sbjct: 616 AKGLEYDSVFLTGVEEDLLPHRMSANEPGGP----------------------------- 646

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                 E  RL YVG+TRA  +L I      +   + N       + +        K+  
Sbjct: 647 -----AEERRLFYVGITRARRRLFISLAMTRAQFGEVNVAMPSRYLQEIPAELIDWKQSP 701


>gi|215402750|ref|ZP_03414931.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           02_1987]
 gi|289744679|ref|ZP_06504057.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987]
 gi|289685207|gb|EFD52695.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987]
          Length = 770

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/634 (15%), Positives = 178/634 (28%), Gaps = 102/634 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +      +              +            + L         ++   
Sbjct: 79  AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + +          +    
Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L        N    P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +     +                      
Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +  +  +         I           +   I+D++A  R 
Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478
           + +  D +S   +L +P     +     +     +      + +   A            
Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 ++   EL          +    +L     R++  +    +    +D L+E ++ 
Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542

Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581
                           +         L   LE+            H    V +MT+HTAK
Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
           GLE PVVF+      +F H          S    
Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPTELSEERG 636


>gi|260869499|ref|YP_003235901.1| exonuclease V, beta subunit RecB [Escherichia coli O111:H- str.
            11128]
 gi|257765855|dbj|BAI37350.1| exonuclease V, beta subunit RecB [Escherichia coli O111:H- str.
            11128]
          Length = 1180

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 276/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            ++  +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VELAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   +++          +  
Sbjct: 847  PQDAAGLCTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARMLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|116334214|ref|YP_795741.1| superfamily I DNA/RNA helicase [Lactobacillus brevis ATCC 367]
 gi|116099561|gb|ABJ64710.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis ATCC 367]
          Length = 750

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/748 (14%), Positives = 208/748 (27%), Gaps = 140/748 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + + +  V                 + ++   L            
Sbjct: 30  GAGSGKTRVLTHRVAYLIEHNNVMPWRILAITFTNKAAKEMRERVIKLLGPDGNDVWVST 89

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKI 110
           F  L                 F       Q+ +I + + +++ D+K+   +         
Sbjct: 90  FHALCVRILRRDADKLGYNRAFTIADPGEQRTLIKRVLQQQNLDIKKFDPRSVLGAISNA 149

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  M +        T    +   Y+   + N  +DF+DLI+ T  L  +    A 
Sbjct: 150 KNALQTPAMMREAAGNPFETTVATVYESYQRELQANQAMDFDDLIMLTIKLFNQD---AD 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +      +  +I +DE QDT+  Q+ ++  L +              L  VGD  QSIY 
Sbjct: 207 VLGYYQDKFQYIHVDEYQDTNDAQYTLVNLLAK----------KHGNLCVVGDGDQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  +               +  L  ++RST  IL   + V     N +   
Sbjct: 257 WRGANMENILNFEHDYP--------DAHVTLLEQNYRSTKTILRAANDVIQRNVNRKKK- 307

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW             +  S+    +   +       A  
Sbjct: 308 --------------------DLW-------TDNAEGEPISYYRGQNENDE-------AHY 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I      +              D  +L R    + +I            I      
Sbjct: 334 VVAKIQEEREQNHH---------DYGDFAILYRTNAQSRVIEETL----VKANIPYTMVG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-- 466
                D   I+D++A    + +  D +S   ++  P        + K+       +    
Sbjct: 381 GHKFYDRKEIRDVLAYLTLVANPADSMSLERIINEPKRGIGATSVEKLRDFAEMNDWTEL 440

Query: 467 -YEYIQKFANCGISKFQHVIKY----IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                   A    ++ +  ++     +  +   A   S  D  + +L          +  
Sbjct: 441 EATQNISLATTLSARVRTAMEKFGLTLKHVQDRAATMSVSDMTSELLDQTGYMASLKASK 500

Query: 522 GNEVI---DVLDEFLNFTLRN--------EQNSYSSLQELISELEQYPPTIKRAHSANHN 570
             E     + ++EFL+ T +            +   L E +++L                
Sbjct: 501 NLEAETRIENIEEFLSVTQKFDDDWDNADHDETEDRLVEFLADLALVSAQD--DVEEEPA 558

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           EV +MT+H AKGLE PV+FL+     +F                                
Sbjct: 559 EVTLMTLHAAKGLEFPVIFLMGLEEGIFPLSRAMLEDDELEEERRL-------------- 604

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                                YVG+TRA ++L +    +     +         V +   
Sbjct: 605 --------------------AYVGITRAQEKLYLTNAYSRMLYGRRQTNPQSRFVTEIAP 644

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHH 718
               +   +  + +              
Sbjct: 645 ELLHLDYSETKSGLTPSRRDVPFARRTA 672


>gi|213418920|ref|ZP_03351986.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Typhi str. E01-6750]
          Length = 1068

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 193  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 251

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 252  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 303

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 304  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 353

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 354  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 403

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 404  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 461

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 462  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 518

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 519  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 570

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 571  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 624

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 625  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 671

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 672  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 731

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 732  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 791

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 792  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 851

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 852  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 911

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 912  LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 971

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 972  WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1007


>gi|227874195|ref|ZP_03992397.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
 gi|227839950|gb|EEJ50378.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
          Length = 793

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 112/702 (15%), Positives = 211/702 (30%), Gaps = 152/702 (21%)

Query: 10  NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--------KKAQTLQQASQTQC 61
            E   LI               ++   L +E G             K AQ ++       
Sbjct: 18  GEGPLLILAGA--GSGKTRVLTHRIAYLILEKGISPYQILAITFTNKAAQEMRDRVNQLL 75

Query: 62  IEERFSLLSSFFLTQ-KFTPQKNIITQEINKKS--PDLKEKLKKSQDEFIKIRDRFNTYK 118
            E +  +  S F +      ++ I     +      D  ++    +  F +++      K
Sbjct: 76  PERQGEIWVSTFHSMCLRILRREIGNLGYDSDFSIYDTDDQKTVMRQVFKELQIDSKMLK 135

Query: 119 MFKSTLASLTL----------------------AKYLNAHYEEAKKKNCVLDFEDLIINT 156
                 A   +                       +     YEE  K+N  LDF+DL++  
Sbjct: 136 ERLVLSALSQVKNQGRSVSDYLLEDPEDFLDGKIRACIRLYEEKLKQNNALDFDDLLLRC 195

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +L +K      +  K  +   +IL+DE QDT+ +Q+ ++  L + +          + +
Sbjct: 196 KELFEKFPA---VLEKYQERFRYILVDEYQDTNDVQFHLVYLLAKKY----------QNI 242

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ QSIY F GA  + +L  +               +++L  ++RSTA IL + + 
Sbjct: 243 CVVGDDDQSIYRFRGANVENILSFESHFPN--------CKVVKLEQNYRSTAPILDLANV 294

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V +  ++ +                        LW                         
Sbjct: 295 VIAENQHRKQKK---------------------LWTAEKEGLKVSFQ------------- 320

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +  SA   A  +   I +                  KD  VL R    + L+       
Sbjct: 321 -EYESAKEEAAAVIRGIRD-------------AGWSYKDQAVLYRTNAQSRLLEEQ---- 362

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              + I               IKD+++  + +++++DD++   ++  P     E  + K+
Sbjct: 363 CIHWNIPYQIVGGVNFYQRKEIKDILSYMKILVNKKDDVALRRIINVPKRGIGEASLLKL 422

Query: 457 CTQRHETETV---YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
                               A     K   ++    E++   +          IL   + 
Sbjct: 423 QQYGESLGGFSLVESLPFAKAAGLSGKALSMVGSFQEMLESWKDVELSALIDRILQDTEY 482

Query: 514 RQQFISRFGNEVI---DVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRAHSAN 568
            +   +    E     + + E          E     SL   + E+       +   +  
Sbjct: 483 EKDLQAEGAIEAESRMENIQELQGKLQSYIEENGDEGSLSAFLEEVSLLSDLDRSDLTE- 541

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            +++ +MT+H AKGLE PVV+LV     +F                              
Sbjct: 542 -DKITLMTLHGAKGLEFPVVYLVGLNEGLFPSAQSMFTPEEREEERR------------- 587

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                L YVG+TRA  +L +    + 
Sbjct: 588 ---------------------LFYVGITRAEKELYLTAGRDR 608


>gi|319947958|ref|ZP_08022138.1| UvrD/REP helicase [Dietzia cinnamea P4]
 gi|319438386|gb|EFV93326.1| UvrD/REP helicase [Dietzia cinnamea P4]
          Length = 1140

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 139/912 (15%), Positives = 286/912 (31%), Gaps = 93/912 (10%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
              LQ A     +   ++ L    L          I +  N    ++ + ++    +   +
Sbjct: 242  ADLQHAVDDPTVTPSWTDLLGSPLKAGN------IGKSTNWGGAEVVKDIRAEIRDLSSV 295

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             ++             L     +   + + ++++  L F D ++   +LL+  +    +R
Sbjct: 296  CEKILVDHWLPRITLVLDALIPVVRRHADERRRHGTLQFHDQLVLARELLRDSE----VR 351

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             ++      ILIDE QDT  IQ ++   LT        + + P  LF VGD KQSIY F 
Sbjct: 352  ARVRARYLRILIDEFQDTDPIQLDLAELLTSG---PGGSGTEPGRLFTVGDPKQSIYRFR 408

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
             A+    LR +      +    Q   +  L  +FR +  +L  V+ VFS    A    + 
Sbjct: 409  RADITTYLRAR----GGSATGTQGPDVERLSTNFRCSRPVLEWVNDVFSEVLTAADGIQP 464

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                +     R     +      V    +              ++          A  +A
Sbjct: 465  EYRALEPAPDRPPHDPSHGPRPFVFRSEEVPE-------HCPPEANETTRRHWAEASDVA 517

Query: 351  YTISNMIGTDTIFS--NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
              I+  I         NG+   ++  DI +L+  R   P++        +   I      
Sbjct: 518  RVIATAIREGWTHESKNGEHTPLRLGDIAILLPSRGALPMLETCL----DHAGIDFRTEA 573

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
              I+     I+DL+   R + +  D+ S V  L+SPLF   +DD+ +             
Sbjct: 574  SSIVYGTPEIRDLLLAVRAVANPADEASLVGALRSPLFGCGDDDLLRWRAGGGGWVLTAP 633

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
                 A+  +++    +  +           P +    ++  +   +          +  
Sbjct: 634  APDDLASSPVAEGMRYLSALGR-----STRRPGELLERLVHDRMVFESVAESPRRRDLWR 688

Query: 529  LDEF-LNFTLRNEQNSYS----SLQELISELEQYPPTIKRAHSA-----NHNEVRIMTVH 578
               F +    + E+++       L+E             R   A       + VRI T+H
Sbjct: 689  RIRFVIEHAWQWEESASDPARADLREYADWAMALTAEDARVPEAAIPEIGVDAVRITTIH 748

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V +       + + + + +       DDP  P     +  R+         
Sbjct: 749  ASKGLEYPMVIVAGMSRG-WPNSNERLLWTE----DDPPRPAVSFSAAVRDPAFDSAAGL 803

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             K   + E  RLLYV  TRA  +L +      + + K     W  ++       +    +
Sbjct: 804  EKLHARAERIRLLYVATTRAESRLAVSGQYAATQKGKPRSDVWASLLGSVIEEPDAPALV 863

Query: 699  KLTNSINKD-------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
            +   ++ +                    +  A          T +   + +     ++ +
Sbjct: 864  EYGENLLEAAAAPEVDVPDEAGWTERTRQIAARSAERAGWSATRIVHPDAVDATPVDEDV 923

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI------ 793
             ++   P +          P+    +               + G  +H L +        
Sbjct: 924  ERQPSLPQQLAAALRERFAPAPARPEELPPRPRYTPIASGPDVGTAVHHLAEHTDLGRLL 983

Query: 794  -----FTLPEHKRKNFITSYCTKNAKLW------PAKEYKNLLLSITRLLENPMMTTAMS 842
                           +                    +    ++      L +  +  A S
Sbjct: 984  GPAADPDSAMADWDRWAADQLVALGLGGGLQGSRNPEAVAEMVSVARTALTSEPVRRAAS 1043

Query: 843  CDSYSEVSVSGKINCPKKDII-ISGRIDQISISQQN-IFIFEYKTH-HHVPQEIEHIPYT 899
               ++E+  +G ++      + + G +D +       + I +YKT        ++     
Sbjct: 1044 RTHWAELPAAGALSTADGARVAVDGVVDLVVQEDDGSLSIIDYKTDVAVTTGTVDE---- 1099

Query: 900  HIAQLSIYEKIL 911
            ++ QL  Y  +L
Sbjct: 1100 YLLQLCAYADLL 1111


>gi|77920551|ref|YP_358366.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77546634|gb|ABA90196.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
          Length = 678

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 97/597 (16%), Positives = 194/597 (32%), Gaps = 120/597 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   +   Y+ A K    +DF+DLI+ T  LL+ +     +  K  Q   ++++DE QDT
Sbjct: 167 VVATIYPRYQRALKAFNAVDFDDLIMLTVRLLQDKPA---VLEKYRQRFRYLMVDEYQDT 223

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ ++R L E            R L  VGD+ QSIY + GA+   +L  ++      
Sbjct: 224 NAAQYRLLRLLAE----------GHRNLCVVGDDDQSIYGWRGADLGNILDFEKDFP--- 270

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +I L  ++RST +ILT  + V       +                       
Sbjct: 271 -----GTMVIRLEQNYRSTGNILTAANAVIRNNLKRK----------------------- 302

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                + +   +     +  +    D   +       AR +   I          +   K
Sbjct: 303 -----IKALWTADGPGDKIDYLLCEDDEDE-------ARVVVERI---------MAERFK 341

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             +  +D  +L R    +       R       +  V        D   +KD++A  R +
Sbjct: 342 ARLSYRDFAILFRTNVQSRAFEEQLR----YQDVPYVLIGGQQFFDRKEVKDVLAYFRVL 397

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKF 481
           L+  D+++ + +L +P     +    ++          +++ ++         +  +   
Sbjct: 398 LNPRDEVNLLRILNTPKRGIGDTSADRLIRFSAEHDIPLWQVLKNPAEVEGLGDKVMESI 457

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFT 536
              +  +       +     D    +L   +     +            +  + E +N  
Sbjct: 458 ATFVDLMQNFRRRFRVGQLSDTGRELLQELRFEDDLLRTAQDPDKARRRMANVAEVINAM 517

Query: 537 LRNEQNSY-SSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLV 591
              EQ     +L+  + ++             +     + V +M++H++KGLE P VFLV
Sbjct: 518 ASYEQREVQPTLEGFLDKVSLLDRDEPPRQDKDAKLQRDAVVLMSLHSSKGLEFPCVFLV 577

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  HK  K  +                                     EE  RL 
Sbjct: 578 GMEDELLPHKKSKGANS----------------------------------NIEEERRLC 603

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           YVG+TRA  +L +   +          R+    + +               +  ++E
Sbjct: 604 YVGITRAQKKLTLLGAARRKKFGVMQLRSPSCFLEEIPDEVLHSAASDAPTATTEEE 660


>gi|148550460|ref|YP_001270562.1| DNA-dependent helicase II [Pseudomonas putida F1]
 gi|148514518|gb|ABQ81378.1| ATP-dependent DNA helicase UvrD [Pseudomonas putida F1]
 gi|313496365|gb|ADR57731.1| UvrD [Pseudomonas putida BIRD-1]
          Length = 728

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 117/694 (16%), Positives = 224/694 (32%), Gaps = 132/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   Q S  +             + ++ + L   +        
Sbjct: 33  GAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGMWVGT 92

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--K 109
           F              + L   F       Q+ +I + + +   D ++   +    FI  +
Sbjct: 93  FHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMRELGLDEQKWPARQAQWFINGQ 152

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +      +       L   + +   YE+A ++  V+DF +L++   DL +       +
Sbjct: 153 KDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPG---L 209

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   H+L+DE QDT+ +Q+  +R L               +L AVGD+ QSIY +
Sbjct: 210 LEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAR----------GGDSLMAVGDDDQSIYGW 259

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                 +I L  ++RST  IL   + + +      G   
Sbjct: 260 RGAKIENIHQYTADFP--------DAEMIRLEQNYRSTGGILKAANALIANNSGRLGK-- 309

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW             +  +  + ++   +       AR +
Sbjct: 310 -------------------ELW-------TDMGEGEPLTLYAAYNEHDE-------ARYV 336

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
             TI +++                 +I +L R    + ++           +I       
Sbjct: 337 VETIESLVKQGNAR----------NEIAILYRSNAQSRVLEEAL----LRERIPYRIYGG 382

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IK+ MA  R I  + +D +   ++  P     E  +  I    RH   +++E
Sbjct: 383 QRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWE 442

Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519
            + +       K          I+ I  L         H      +         Q+   
Sbjct: 443 AMCQLLAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTIEQSGLITYHQEEKG 502

Query: 520 RFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
             G   ++ L+E ++     E     + L  L + L              + + +++MT+
Sbjct: 503 EKGQARVENLEELVSAARNFESTDEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTL 562

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VFLV     +F HK   +                                
Sbjct: 563 HSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG----------------------------- 593

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                  EE  RL YVG+TRA  QL++       
Sbjct: 594 -----RLEEERRLAYVGITRAMRQLVMTYAETRR 622


>gi|238060999|ref|ZP_04605708.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149]
 gi|237882810|gb|EEP71638.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149]
          Length = 799

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 98/614 (15%), Positives = 183/614 (29%), Gaps = 118/614 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    Y+   ++   LDF+DLI+ T  L +       +     +   H+L+DE QD
Sbjct: 198 RALAEAYTLYQRRLREAHALDFDDLIMTTVHLFQSHPH---VAESYRRRFRHVLVDEYQD 254

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +I+ L       +        L  VGD  QSIY+F GA  + +L  +R     
Sbjct: 255 TNHAQYTLIKELVSGTEGIEPAE-----LCVVGDADQSIYAFRGATIRNILEFERDF--- 306

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL   + V     + +     S                
Sbjct: 307 -----TDARTILLEQNYRSTQTILNAANAVIDRNTSRKPKRLWS---------------- 345

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                      D+    Q   + +         +    A  +   +  ++          
Sbjct: 346 -----------DAGAGEQIVGYVA--------DTEHAEADWVGREVDRLVDEAE------ 380

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D+ V  R    + +   +         +           +   ++D +A  R 
Sbjct: 381 ---ARPGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDALAYLRA 433

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-------NCGISK 480
           +++ +D +S   +L +P     E     +          +    + A           + 
Sbjct: 434 VVNDDDTVSLRRILNTPRRGIGERAEACVEALSSRDRISFGAALRRAGDAPGISTRAANG 493

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
               +  +     +A+  +P +    +L       +       +    +D L E ++   
Sbjct: 494 IGDFVALLDGARELAETGTPEEVLEALLTRSGYLTELEESLDPQDAGRVDNLQELVSVAR 553

Query: 538 RN--------EQNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
                     E+   +++   + +  L      I      +   V +MT+HTAKGLE PV
Sbjct: 554 EYTERIEALGEEGDRATVAGFLEQVALVADADQIPADDPDHQGVVTLMTLHTAKGLEFPV 613

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFL      VF H                                  L         EE 
Sbjct: 614 VFLTGLEDGVFPH----------------------------------LRSLGDTRELEEE 639

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YVG+TRA  +L + +    S   +         + +      R ++ + T +    
Sbjct: 640 RRLAYVGITRARQRLYLSRAVTRSAWGQPAYNPPSRFLEELPPELVRWERTEGTYTSWGG 699

Query: 708 EWIAYEWSTHHPEN 721
                         
Sbjct: 700 GGGGVGGRADRAPR 713


>gi|313816227|gb|EFS53941.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1]
 gi|315098848|gb|EFT70824.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2]
          Length = 1072

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 148/995 (14%), Positives = 297/995 (29%), Gaps = 122/995 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         I    +  +       L KA           I +    L+    +   +
Sbjct: 122  AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K +   +   +   L    K+  D +  I    +     +  L  +       A Y+ 
Sbjct: 182  PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+ +L
Sbjct: 234  LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
               F    + H     + AVGD  Q+IY + GA    +L   R    +    G    ++ 
Sbjct: 291  ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  + R    I+   +               ++  +R   S   + G     +       
Sbjct: 345  LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
             Q     E       ++          +  A  +       TI         +  D  +L
Sbjct: 391  GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            VR+  D   +            + V   +   L     I  ++A  R ++ ++DD +   
Sbjct: 443  VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498

Query: 440  MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483
            +L +P    S DD+  +  +                      + + + +    G  + Q 
Sbjct: 499  LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558

Query: 484  VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             +K +   I      +  SP D    I           +   +        LD   N   
Sbjct: 559  ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRGHLDALWNAIR 618

Query: 538  RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               ++    ++  +++ L         + RA + + + V + TVH AKGLE P+V + D 
Sbjct: 619  EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678

Query: 594  GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
               VF              ++PS        I  P S S  +  + +    + S   E  
Sbjct: 679  AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            RL YV +TRA ++L++  H      K S     Y ++             +  +   +  
Sbjct: 738  RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYAVLLADMLGTVWPDFGERPDDDIQAG 797

Query: 709  WIAYEWS--------------------THHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                 ++                        +    + +  +K       +  ++  P +
Sbjct: 798  TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801
               ++   L+ +    +           ++    G   H+         + I      + 
Sbjct: 858  LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917

Query: 802  KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                    T+ A        +   L S+ +  E      A      + ++V         
Sbjct: 918  AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971

Query: 861  DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              ++ GR+D +     +     + ++KT      +          QLSIY      +   
Sbjct: 972  QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                +  +  +V   +             A I T 
Sbjct: 1024 DPSRVRAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|308051416|ref|YP_003914982.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799]
 gi|307633606|gb|ADN77908.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799]
          Length = 721

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 105/582 (18%), Positives = 188/582 (32%), Gaps = 118/582 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            +   Y+EA  +  ++DF +L++  ++L LK+      +     Q   HIL+DE QDT+ 
Sbjct: 172 QIYQAYQEACDRAGLVDFAELLLRAHELWLKQPH----LLRHYQQRFRHILVDEFQDTNA 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA  + + +           
Sbjct: 228 IQYAWIRMLASD----------GSHIMIVGDDDQSIYGWRGARVENLQKFLDDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST+ IL+  + + +      G                      +L
Sbjct: 273 ---GAQTIRLEQNYRSTSTILSAANALIAHNAERMGK---------------------EL 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W             +  S    F+ L +       AR I   I   +             
Sbjct: 309 W-------TEGATGEPISLYCAFNELEE-------ARYIVGRIKQHLDGGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  +L R    + ++            ++          +   IKD +   R I +
Sbjct: 348 ---SDCAILYRSNAQSRVLEEAL----LHQSVAYRIYGGLRFFERQEIKDALGYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R E  T++   Q+  +         S    
Sbjct: 401 RHDDAAFERIVNTPTRGIGDRTLDIVRATARAEGITLWRACQRLLSERGLAGRAASAVAA 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
            I  I +L               ++     R  + +  G +     + L+E +      E
Sbjct: 461 FISLIDQLEEEVMDAPLKRQADHVINHSGLRAMYEAEKGEKAEARIENLNELVTAAGSFE 520

Query: 541 Q-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +      + EL + L        +     N + V++MT+H+AKGLE P+VF+      +F
Sbjct: 521 RPEDSEEMSELNAFLAHAALEAGEGQADDNDDAVQLMTLHSAKGLEFPLVFMCGVEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVGMTRA
Sbjct: 581 PSQMALDEG----------------------------------DRLEEERRLCYVGMTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
             +L I    +     +         + +         ++  
Sbjct: 607 MQKLYITYAESRRLYGRETFAKASRFIREIPQEHLDEVRLTT 648


>gi|168236044|ref|ZP_02661102.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
 gi|194736312|ref|YP_002115943.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Schwarzengrund str. CVM19633]
 gi|194711814|gb|ACF91035.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. CVM19633]
 gi|197290868|gb|EDY30222.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
          Length = 1181

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 123/876 (14%), Positives = 273/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     + +     E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQISAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPTMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTGREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|148653621|ref|YP_001280714.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
 gi|148572705|gb|ABQ94764.1| ATP-dependent DNA helicase Rep [Psychrobacter sp. PRwf-1]
          Length = 679

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 108/634 (17%), Positives = 207/634 (32%), Gaps = 126/634 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      + +   +++ I+      T    +       +   L A YE  
Sbjct: 124 RDNLSGAESRELVGKAIKFISDWKNDLIEPDKAMETLDDPEDM-----IFATLYALYERN 178

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    +L++      +R K    I ++L+DE QDT+  Q+E+I+ + 
Sbjct: 179 LRAYNAVDFDDLIVLPAKILRENP---QLRDKWQNRIRYLLVDEYQDTNTAQYELIKLIV 235

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                             VGD+ QSIY++ GA P+ +   K    K          +I+L
Sbjct: 236 G----------PTGKFTVVGDDDQSIYAWRGARPENMALLKEDFPK--------LKVIKL 277

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  IL   + V    E+    +  S              G  +    +  ++D 
Sbjct: 278 EQNYRSTNRILNAANTVIMNNEHLFEKALWSDK------------GQGEKIRIINCRNDD 325

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
             +                        R+A  I          ++  +   + +   VL 
Sbjct: 326 DES-----------------------ERVAKEI---------ITHKLRHGNEWEQYAVLY 353

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R L+    I    +          IKD+M   R IL+ EDD +F+ +
Sbjct: 354 RSNFQARMLEAQLRQLQ----IPYKLSGGQSFFARSEIKDVMGYLRLILNPEDDSAFLRI 409

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHEL-I 492
           + +P        + K+    +  + ++                  S  +    +I     
Sbjct: 410 VNTPKRGLGPATLEKLGLFSQEHSISLLASCTHGGLSHVLPIKAYSTLKEFGDFIEHYTR 469

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFL----NFTLRNEQNS 543
            + Q   P      ++          S           +D ++           R E + 
Sbjct: 470 ELDQHPDPVPLVRQMIDETGYIDFVRSDSKTPHQEKGRLDNIEVLYTSIQALINRAEDDD 529

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             ++  +I +L       ++    N N+V +MT+H AKGLE   V+++    ++  H   
Sbjct: 530 DKTIDAVIRKLVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDFVYIMGLEEELLPH--- 586

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA  +L 
Sbjct: 587 --------------------------------RNSIIAETIEEERRLMYVGITRARRELT 614

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           +   +      +    T    + +          
Sbjct: 615 LTLAAQRRGGGQMRTTTQSRFLEELPEEHLDWPA 648


>gi|325144733|gb|EGC67028.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240013]
          Length = 671

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 111/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW ++      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + + +++  R       ++ EL   +       
Sbjct: 478 SLLEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|265993865|ref|ZP_06106422.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
 gi|262764846|gb|EEZ10767.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3
           str. Ether]
          Length = 424

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 123/418 (29%), Positives = 189/418 (45%), Gaps = 25/418 (5%)

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           +Q  +  LE   P IKR      +EVRIMTVH AKGLE  VVFLVD GS V++     K+
Sbjct: 1   MQAFLETLEAAAPEIKRELDQGRDEVRIMTVHAAKGLEGAVVFLVDPGSAVWTGSRAPKL 60

Query: 607 HIMPSLNDDPGI--PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                  D P +   +W P S  +    +  I+ LK   +EEY RLLYVGMTRA D+LII
Sbjct: 61  IPYDFQGDGPPVKGFLWQPNSSCQTGFTAAEIEKLKNRAEEEYRRLLYVGMTRAEDRLII 120

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
           C +       + +  TW+ +V D+           +T         A       P +   
Sbjct: 121 CGYRG----TRESGETWHRLVEDALAAKSETFVHPVTGV-------AARRYRKTPRSFIE 169

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS--------- 775
             EE         ++P     P+K +   P  L PS      + + E  L          
Sbjct: 170 INEEDQAGATSLPQLPHDYRQPMKAEPGLPRPLAPSGASALIEADEEPPLDLSSPVLQPG 229

Query: 776 ---DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                    RG  IH LLQ +  +   KR++    Y  + A  WP  E      S+  +L
Sbjct: 230 TGAPAFALRRGTAIHMLLQYLPDVAPEKREHLAADYLARIAADWPDAERLKAWQSVHAIL 289

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
           ++P      +  S  EV+V G I+   +D  +SG+ID+IS+ +  + I +YKT+   P+ 
Sbjct: 290 DDPRFGPVFAEGSRGEVAVMGMIDIGGRDHAVSGQIDRISVDESRVLIVDYKTNRPPPKT 349

Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
           +E +P  + AQL++Y ++L+  YP + +   L++   P + ++P   L+ A   +   
Sbjct: 350 LEAVPSAYRAQLALYRELLRPLYPGRVVEAALLFTEGPFLLLVPDAVLDDAMGALKDT 407


>gi|168820281|ref|ZP_02832281.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|205342959|gb|EDZ29723.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|320087418|emb|CBY97183.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Salmonella enterica
            subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 1181

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 125/874 (14%), Positives = 270/874 (30%), Gaps = 123/874 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
              +  +TV E    +        + V+  +  L       S  +    +L    G ++  
Sbjct: 634  DENAWDTVVEEFDGYRQIWHK--RGVMPMLRAL------MSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L          +                      ++    +   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAEES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYDSF 689
            I   +     E  RLLYV +TRA     +         S+   E   +Q     ++    
Sbjct: 787  IALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGE 846

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
              D    +  +    ++D       +T     +       E   + +          +  
Sbjct: 847  PMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + +    +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV----S 850
                +           +          L ++  +  N     ++     +   E+     
Sbjct: 967  PINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLP 1026

Query: 851  VSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTHHH 888
            ++  +   + D +I                       G ID +   +   ++ +YK++  
Sbjct: 1027 IAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWL 1086

Query: 889  VPQEIE---------HIPYTHIAQLSIYEKILKD 913
                              + +  Q  +Y   L  
Sbjct: 1087 GEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|307730434|ref|YP_003907658.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
 gi|307584969|gb|ADN58367.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
          Length = 787

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 111/662 (16%), Positives = 206/662 (31%), Gaps = 159/662 (24%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   +   F +L +     + +  K ++ + +N          K  Q      ++
Sbjct: 96  LRAHHRDAGLPATFQILDTA---DQLSAIKRLM-KGLNIDDEKYPA--KNLQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    K   +T         L   Y++  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFRHILVDEFQDTNKLQYAWLKLLAGQTNA----------IFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +     R         +I+L  ++RS   IL   +++ +      G +  + 
Sbjct: 257 NVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------ESATDTQEAGWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  +I T T             +I VL R    +  I         +  I+         
Sbjct: 334 IKALINTGT----------SRSEIAVLYRSNAQSRTIEHTL----VNAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYNCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLD 530
             A    S        I ++    Q  S  +    ++ A      + + R G + ++ L 
Sbjct: 440 YVAGKAGSSLAAFANLIGKMRAETQQMSLPETVEYVVRASGLADFYQNEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNS----------------------------------------------Y 544
           E +N                                                        
Sbjct: 500 ELVNAAAAFVSEEGYGMDTPARSIPLRPGASAAPELAVATDDPNTVVLDAPGIAEPAQNP 559

Query: 545 SSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++  L   L             A    V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              ++    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------AMESDGLEEERRLMYVAITRAKERLY 645

Query: 664 IC 665
           + 
Sbjct: 646 LS 647


>gi|224584782|ref|YP_002638580.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Paratyphi C strain RKS4594]
 gi|224469309|gb|ACN47139.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
            Paratyphi C strain RKS4594]
          Length = 1162

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 122/876 (13%), Positives = 271/876 (30%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 287  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 345

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 346  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 397

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 398  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 447

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                 +   + ++           V          +    P    W    +S       S
Sbjct: 448  TFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 497

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 498  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 555

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 556  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 612

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 613  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 664

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 665  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 718

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 719  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 765

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 766  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 825

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 826  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 885

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 886  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 945

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 946  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1005

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1006 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1065

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1066 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1101


>gi|298368953|ref|ZP_06980271.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282956|gb|EFI24443.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 688

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE L K+Q +    ++   T +    T   A         A Y+E  +    +DF+DLI 
Sbjct: 144 KEALFKAQHQISLWKNDLKTPEDVLQTASNAWEEQIARAYASYQETLQSYQAVDFDDLIR 203

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 204 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 250

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 251 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 302

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV             S              G  ++ + V  Q++               
Sbjct: 303 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 335

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                      A  +   I    ++G D           Q  D  VL R      +    
Sbjct: 336 --------QHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 378

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      ++    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 379 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 434

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +   
Sbjct: 435 LGKLNTYAHEHECSLYEAAQTEEALALLNNTNRQHLQAFMDMFGSYRAKAETSEAGELIN 494

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + +   +  R  +    ++ EL   +       
Sbjct: 495 GLLKEIDYENHLLASEEGKAGEIKWRNVSDLTGWLERKGEQDGKNIIELAQTVALMTLLE 554

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V++ T+H +KGLE P VFLV     +  H                     
Sbjct: 555 GK-SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGILPHN-------------------- 593

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 594 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 638

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 639 SRFIDEMPQED 649


>gi|331664379|ref|ZP_08365285.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA143]
 gi|331058310|gb|EGI30291.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA143]
          Length = 1120

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 246  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 304

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 305  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 356

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 357  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 406

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 407  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPTMKMWLMEGESCGVGDYQS 456

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 457  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 516

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 517  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 573

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 574  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 625

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 626  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 679

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 680  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 726

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 727  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 786

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 787  PQDAAGLRTCIEALCDDDIAWQTAQMGDNQPWQVNDAITAELNARTLQRLPGDNWRVTSY 846

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 847  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 906

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 907  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 963

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 964  YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1023

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1024 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1060


>gi|307131099|ref|YP_003883115.1| exonuclease V (RecBCD complex), subunit beta [Dickeya dadantii 3937]
 gi|306528628|gb|ADM98558.1| exonuclease V (RecBCD complex), beta subunit [Dickeya dadantii 3937]
          Length = 1224

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 141/1048 (13%), Positives = 292/1048 (27%), Gaps = 169/1048 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKK-----AQTLQQASQTQCI 62
                      K  WP    ++ D+        +     +  +        LQ  + +   
Sbjct: 229  EEKTRRLSALKAPWPQWCGELRDLLNAAVAQKKADGRKLQARYFEPWLDKLQHWATSDEA 288

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
                            T    +  Q + +     +E  +      ++   +  +      
Sbjct: 289  MLDI-----------GTGWTRLTPQGLRECWKVPEEAPQHPALTAMETLAQQLSELPEPR 337

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            +       ++++  +   ++    + F+DL+   +  L+  D    +  +I ++    +I
Sbjct: 338  SQLLRHACRWVSQRFRHEQESRAQMGFQDLLTRLDAALRG-DNGERLAQRIRRQFPVAMI 396

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT  +Q+ +  +L          +   + L  +GD KQ+IY+F GA+    LR +R
Sbjct: 397  DEFQDTDPLQYRIFDTLYR-----VADNDPQQGLILIGDPKQAIYAFRGADIYTYLRARR 451

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG-------LSEDSTTTI 295
                             L  +FRST  ++  V++VF   EN             D    +
Sbjct: 452  D---------TDGRHYTLGTNFRSTQAMVGAVNQVFMQAENRADGAGAFLFRQPDGDNPV 502

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTIS 354
                 +    G  + W       D         WT   D  L        +A   A  + 
Sbjct: 503  PFLPVKAN--GRDEAWVL-----DGADAAALTCWTLATDEPLSSAEYRQRMAAGCAREMV 555

Query: 355  NMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
             ++                 R ++  D+ VLV   ++   +             SV  +D
Sbjct: 556  RLLQLGGQGRAGFAVPGQPLRPVKPGDMAVLVNTGREAMAVRAQLSA---RGVRSVYLSD 612

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            R  + D     +L          E+D      L +P    S   + ++     E      
Sbjct: 613  RESVFDSPQAGELHCWLAACADPENDRLLRAALATPALGLSWQALDRLNHDEQE------ 666

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
               +        +Q   +    L  + +     D    +L A   R              
Sbjct: 667  --WERRVMQFDHYQRCWQQQGVLPMLRRLMWDFDVPRRLLAADNTRA-LTDML------H 717

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYP---PTIKRAHSANHNEVRIMTVHTAKGLES 585
            L E L     +    ++ ++ L  + +       T+K    ++ + V+++TVH +KGLE 
Sbjct: 718  LSELLQQASVHLDGEHALIRYLAEQCQADNPGGDTLKLRLESDADLVKVVTVHKSKGLEY 777

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            P+VFL    +     +    +             I             + ++        
Sbjct: 778  PLVFLPFACAFRTVSQRDVPLKFHDDDGKPRLELI----------ASDEAVQRADHERLG 827

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT---------------------WYDM 684
            E  R  YV +TRA   + +        EK S                             
Sbjct: 828  EDLRKFYVALTRARYAMWLGMAPLKELEKSSPGYLLGAGEPLEPAQLTQQLSTWCGADSQ 887

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +      D+ V + +L       E    +  +H    T     +   +    +       
Sbjct: 888  IAPLPETDDAVYRAELHTPALGQEPPLPDMRSHRWRITSYSGLQLAPEGHYREFREPAAG 947

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLS---DNQTFNRGLIIHKLLQVIFTLP---- 797
               +    +    +      +    L S L      +    G  +H LL+          
Sbjct: 948  DEPEVQSAKQETFSEPQASAERLPPLPSGLDMYSFPRGAAPGSFLHGLLEWAGKEGFAAL 1007

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----------MTTAMSCDSY 846
               R         +  +    +    L   +  LL  P+           +         
Sbjct: 1008 AANRPRVEDQVARRCNRQGWTQWIPMLTDWLMTLLSQPLALPTQPGSAVSLARLTQYQVE 1067

Query: 847  SEVSVS-----------------------GKINCPKKDIIISGRIDQISISQQNIFIFEY 883
             E   +                         +   + + ++ G ID +   Q   ++ +Y
Sbjct: 1068 MEFWFALNQVDTQILDQQVRAATLAGEPRAALMREQLNGMLKGFIDLVFEHQGRYYVLDY 1127

Query: 884  KTHHHVPQEIE---------HIPYTHIAQLSIYEKILKDSYP--------NKSLVCLLI- 925
            K++       +          + + +  QL++Y   L             ++ +   L  
Sbjct: 1128 KSNWLGADAADYDLPRMASAMLEHRYDLQLALYLFALHRLLKSRLPDYDYDRHVGGALYL 1187

Query: 926  YVSEPKV------FIIPQNKLNKAFAEI 947
            ++   +          P   L +A   +
Sbjct: 1188 FLRGSQAPGGGVCAERPDRSLIEALDRL 1215


>gi|197286155|ref|YP_002152027.1| exonuclease V subunit beta [Proteus mirabilis HI4320]
 gi|194683642|emb|CAR44563.1| exodeoxyribonuclease V beta chain [Proteus mirabilis HI4320]
          Length = 1212

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 139/985 (14%), Positives = 301/985 (30%), Gaps = 165/985 (16%)

Query: 62   IEERFSLLSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
              +  +  ++   T+ +             +++K+            E   +  +  T +
Sbjct: 271  WIDEITAWATPLETKSYQLPDCLSRFSQATLHEKTTKGAAPEHALFAEIELLCQQSLTLR 330

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                  A   + + +    E  K +   L F+DL+   +  L++ +    +   I Q   
Sbjct: 331  DVIIANAIPEIRQGI----ENEKMRRGELGFDDLLTRLDKALQR-EGGEALADAIRQRYP 385

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
              +IDE QDT   Q+ +  ++  +             L  +GD KQ+IY+F GA+    +
Sbjct: 386  VAMIDEFQDTDPQQYRIFDTIYGEHTESG--------LLFIGDPKQAIYAFRGADIFTYI 437

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            R ++          Q      L  ++RS   +++ V+K+F   +            +   
Sbjct: 438  RARQ----------QTDHHYTLNTNWRSAPGMVSAVNKLFLRSKTPFLFDHIPFIEVN-- 485

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                    + +  + +   +  +       W +  +SL   +   ++A + A  I + + 
Sbjct: 486  --------SAEKNQHMKFIYQQKTVAPLNFWLAEGESLSTGNYEQLMASQCAMQIRDWLS 537

Query: 359  TD-----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                    +     KR + + DI+VLVR R++  LI      L      SV  ++R  + 
Sbjct: 538  AGDNQQAWLIEQDNKRAVTSADIVVLVRSRREALLIRDALDLLSIQ---SVFLSNRESVF 594

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
            +    KDL+ L + +++ E +      L S LF F+   I ++           E    +
Sbjct: 595  ETNEAKDLLWLLQAVVTPEKERVLRASLASALFGFNAQQIDELNQDEQRWNRYVEQFSDY 654

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                  +          L  + +    +     +L ++ G ++            + E L
Sbjct: 655  FVLWQKR--------GVLPMLRKVMIENQIAENLLASQAGERRLTDIM------HIGELL 700

Query: 534  ---NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
               +  L +E      L + IS  +    + +    ++ N V+I T+H +KGLE P+V L
Sbjct: 701  QETSLQLDSEHALIRWLAQQISRPDAQAESQQMRLESDKNLVQICTIHKSKGLEYPIVCL 760

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                +     +    ++               P S           +   +    E  RL
Sbjct: 761  PFACNY---QEQKGALYHDRDEFYAKLDIFNQPDSV----------RLADEERLAEDLRL 807

Query: 651  LYVGMTRASDQLIIC------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            LYV +TRA     +        +   S     ++     ++      +  +    +   +
Sbjct: 808  LYVALTRAKFCCYVGVAPLVKGNKRKSGLTDLHKNALGYLLQHGEEGNSELLHQSINQLL 867

Query: 705  NKDEWIAYE-----WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            + +  +             P  T +  +  I +           +S +    +    L  
Sbjct: 868  DDNIKVITLGDTSTHRYQSPHTTDIALDAAIFKRKINDNWRITSYSGLTAQHSARGYLFD 927

Query: 760  ST-------------------IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
            S                      T   ++  S+    +    G  +H LL+ +       
Sbjct: 928  SADLDALVQSIAPGLDTDAKGEKTAQHSDELSIHHFPRGAVAGTFLHSLLEELDFSQPID 987

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGK 854
                      +    +  K    L+  +  L   P+      +          E+     
Sbjct: 988  ESWMQEQLIAQ---GFEEKWTPLLVAWMETLFHTPLNAQGLCLADIPKEHQLDELQFYLP 1044

Query: 855  IN--------------------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
            I                             +   ++ G ID +   +   ++ +YK++  
Sbjct: 1045 IEKEMSAAQLTELTRQYDPLSAQCPALNFQQVQGMLKGFIDLVFCWEGKYYVVDYKSNWL 1104

Query: 889  VPQEIEHIPY---------THIAQLSIYEKI----LKDSYPNKSLV------CLLI---- 925
                 ++             +  Q  +Y       L+   P+          C L     
Sbjct: 1105 GESSEDYTQEAMSNAMRDHRYDLQYQLYTLALHRFLQQRLPDYDYQRHFGGICYLFLRGI 1164

Query: 926  ---YVSEPKVFIIPQNKLNKAFAEI 947
               Y        +P+ K  +A   +
Sbjct: 1165 DTDYPGNGVYTYLPEEKFVEALDAL 1189


>gi|323978565|gb|EGB73647.1| exodeoxyribonuclease V [Escherichia coli TW10509]
          Length = 1180

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 272/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I + +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILKPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSTVEEPTLTPHQFPRGASLGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          +  +    L   IT +L+ P+      +      D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FEVQWEPVLTEWITAVLQAPLNETGVSLNQLPDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|293449143|ref|ZP_06663564.1| exodeoxyribonuclease V [Escherichia coli B088]
 gi|331678798|ref|ZP_08379472.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H591]
 gi|291322233|gb|EFE61662.1| exodeoxyribonuclease V [Escherichia coli B088]
 gi|331073628|gb|EGI44949.1| exodeoxyribonuclease V, beta subunit [Escherichia coli H591]
          Length = 1183

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  ++     +    L        +       K++   L F+D++   +  L+  
Sbjct: 309  RHPLFEAIEQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 368  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 420  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 470  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 520  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 580  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 637  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 689  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 743  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 790  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 850  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 909

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 910  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 970  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1026

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123


>gi|110680547|ref|YP_683554.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114]
 gi|109456663|gb|ABG32868.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114]
          Length = 810

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 106/654 (16%), Positives = 199/654 (30%), Gaps = 131/654 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+    +   +DF DL+++   + +  +    +  +  +   +IL+DE QDT++ Q
Sbjct: 196 LYAQYQRRLIELNAVDFGDLLLHMVTIFQTHED---VLKQYQRWFAYILVDEYQDTNVAQ 252

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R L              + +  VGD+ QSIY + GAE   +LR ++          
Sbjct: 253 YLWLRLLAA----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------- 295

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RST  IL     V +  E   G +                        
Sbjct: 296 -GAHVVRLEQNYRSTPHILAAASGVIAGNEGRLGKTLF---------------------- 332

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       ++     ++D   +       AR I   I                   
Sbjct: 333 ------TDVTEGEKVRLIGHWDGEEE-------ARWIGDEIEAAQRGTRGLEK-----FS 374

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D+ +LVR                    +           + + I+D MA  R ++S +
Sbjct: 375 LDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRVVVSPD 430

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGISKFQHVI 485
           +DL+F  ++ +P     +     I  T R    +++E              G ++ + ++
Sbjct: 431 NDLAFERIVNTPKRGLGDKAQQTIQTTARANGVSLFEGARLAVAQGLIKGKGGAELRKLV 490

Query: 486 KYIHELIHIAQFC-------------------SPHDFFTLILGAKKGRQQFISRFGNE-- 524
           + I   I +                       S  +   +IL        + +    E  
Sbjct: 491 EGIDRWITMLHQRKQVDGDAVIDDGGGGALAFSHIELAEVILDESGYTTHWQNEKTPEAP 550

Query: 525 -VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
             ++ L E ++     E         L   LE     +     A   +V +MT+H AKG 
Sbjct: 551 GRLENLKELVSQLQNFEN--------LQGFLEHVSLIMDNERDAGEEKVTLMTLHAAKGT 602

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P++FL      +   +                                          
Sbjct: 603 EFPLIFLPGWEDGLLPSQRS-----------------------MDEGGTEVRNGKRIAKG 639

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            EE  RL YVG+TRA     I   +N    ++     ++     +      E V+ +   
Sbjct: 640 LEEERRLAYVGITRAKKLCTISFVANRLIFSKGMKGWQSMMPSRFIDELPPEHVEVLTPP 699

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                    A   ST H +      E  +      +++  +      +   E  
Sbjct: 700 GLYGGGYGAAAPRSTLHDQ----AAEANVYNSPGWRRLQARSQDRPVSQPRESR 749


>gi|82545121|ref|YP_409068.1| exonuclease V subunit beta [Shigella boydii Sb227]
 gi|81246532|gb|ABB67240.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella boydii
            Sb227]
 gi|332092103|gb|EGI97181.1| exodeoxyribonuclease V, beta subunit [Shigella boydii 3594-74]
          Length = 1180

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 131/971 (13%), Positives = 295/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      ++ S  
Sbjct: 215  DETLASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N     +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPKSVDLAEVERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          + ++    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      ++     D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNEKGVSLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|323167843|gb|EFZ53534.1| exodeoxyribonuclease V, beta subunit [Shigella sonnei 53G]
          Length = 1170

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 296  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 354

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 355  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 406

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 407  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 456

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 457  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 506

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 507  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 566

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 567  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 623

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 624  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 675

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 676  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 729

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 730  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 776

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 777  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 836

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 837  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 896

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 897  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 956

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 957  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1013

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1014 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1073

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1074 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1110


>gi|255004091|ref|ZP_05278892.1| DNA helicase II (uvrD) [Anaplasma marginale str. Virginia]
          Length = 661

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 107/612 (17%), Positives = 188/612 (30%), Gaps = 123/612 (20%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTL--A 125
           L   F       Q  +I   +N   P    E+ KK      + +++         T    
Sbjct: 122 LRRDFTVIGPDDQLQLIKAIVNDTQPGHPAEECKKMMHAIQRWKEKGLLPAGVTDTELQK 181

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              + + +   Y+E  K     DF DL++    +       A +     ++  ++++DE 
Sbjct: 182 CPNIVRDVYYEYQERLKALNCADFGDLLLYNVSMFSAH---ADVLSHYQEQFKYVMVDEY 238

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +Q+  +R + +            + +  VGD+ QSIYS+ GAE   +LR      
Sbjct: 239 QDINTVQYLWLRLIVQ----------KRKNICCVGDDDQSIYSWRGAEVGNILRFADDFP 288

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +          I+ L  ++RST++IL     + +  ++  G                   
Sbjct: 289 E--------AKIVRLECNYRSTSNILCAASAIINNNKSRLGKK----------------- 323

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW    + H  Q     + W              + A+ I+  I            
Sbjct: 324 ----LW---TTNHAGQKVGLMKFWDG-----------RMEAQFISEYIK----------- 354

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +  +  +LVR    T +             I           D   IKDL++  
Sbjct: 355 -GSSEYRFDETAILVRAGFQTRVFEEYL----VRCGIPYKIIGSTKFYDRQEIKDLVSYL 409

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGI 478
           R + + ++D++F  ++  P        + K+    R    ++ E                
Sbjct: 410 RVVTNPKNDIAFERIVNKPKRQLGASTVAKMRAYARDNRLSLLESGESMIRFGLLPERTS 469

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFT 536
           +  Q+++             S       I                    I+ + E     
Sbjct: 470 NTLQNLLDKFKCWRETLDTTSLTTVMQAIAEGSGYMNMLKDEGDAGASKIENIRELFAAV 529

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              E        + +  +         +     N V +MT+H AKGLE P+VFL      
Sbjct: 530 GNFENA-----TKFLEHISLVTEVD--SPEQASNHVYLMTLHAAKGLEFPLVFLPGWEEG 582

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           VF H+                                           EE  RL YVGMT
Sbjct: 583 VFPHEKSIHDSTGN--------------------------------ALEEERRLAYVGMT 610

Query: 657 RASDQLIICKHS 668
           RA +QL I   +
Sbjct: 611 RAREQLFISCVA 622


>gi|323172878|gb|EFZ58509.1| exodeoxyribonuclease V, beta subunit [Escherichia coli LT-68]
          Length = 854

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 123/853 (14%), Positives = 268/853 (31%), Gaps = 129/853 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +       K++   L F+D++   +  L+  +    +   I       +IDE QD
Sbjct: 4   RALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQD 62

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T   Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +      
Sbjct: 63  TDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAH 114

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            T          L  ++RS   ++  V+K+FS  ++A    E     ++           
Sbjct: 115 YT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA---- 160

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362
                 +      +  P  + W    +S       S +A+  A  I + +         +
Sbjct: 161 ------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALL 214

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
            +    R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++
Sbjct: 215 MNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEML 271

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            L + +++ E + +    L + +   +  DI  +           E+           ++
Sbjct: 272 WLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDVVVEEFDGYR 323

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539
            + +    +  +    S  +    +L    G ++            + E L      L +
Sbjct: 324 QIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLES 377

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E      L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +    
Sbjct: 378 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 437

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                      ++    N   + +   +     E  RLLYV +TR+ 
Sbjct: 438 DQAFYHDR-------------HSFEAVLDLNAAPESVDLAEVERLAEDLRLLYVALTRSV 484

Query: 660 DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
               L +        +KK +       +       E      L   I         W T 
Sbjct: 485 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTA 544

Query: 718 ------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPST 761
                   +       E   + +          +              D+     ++ + 
Sbjct: 545 QTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 604

Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
           + +  +    +     +  + G  +H L + +         N++          + ++  
Sbjct: 605 VVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWE 661

Query: 822 KNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK---------------- 859
             L   IT +L+ P+      ++     D   E+     I+ P                 
Sbjct: 662 PVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLS 721

Query: 860 ----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTH 900
                        ++ G ID +   +   ++ +YK++                    + +
Sbjct: 722 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 781

Query: 901 IAQLSIYEKILKD 913
             Q  +Y   L  
Sbjct: 782 DLQYQLYTLALHR 794


>gi|300815762|ref|ZP_07095986.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 107-1]
 gi|300906653|ref|ZP_07124342.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 84-1]
 gi|301302956|ref|ZP_07209083.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 124-1]
 gi|307310570|ref|ZP_07590218.1| exodeoxyribonuclease V, beta subunit [Escherichia coli W]
 gi|331669552|ref|ZP_08370398.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA271]
 gi|300401554|gb|EFJ85092.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 84-1]
 gi|300531691|gb|EFK52753.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 107-1]
 gi|300841620|gb|EFK69380.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 124-1]
 gi|306909465|gb|EFN39960.1| exodeoxyribonuclease V, beta subunit [Escherichia coli W]
 gi|315062126|gb|ADT76453.1| exonuclease V subunit beta [Escherichia coli W]
 gi|315256680|gb|EFU36648.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 85-1]
 gi|323377294|gb|ADX49562.1| exodeoxyribonuclease V, beta subunit [Escherichia coli KO11]
 gi|331063220|gb|EGI35133.1| exodeoxyribonuclease V, beta subunit [Escherichia coli TA271]
          Length = 1180

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  ++     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIEQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|114049045|ref|YP_739595.1| DNA-dependent helicase II [Shewanella sp. MR-7]
 gi|113890487|gb|ABI44538.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-7]
          Length = 722

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 189/551 (34%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF ++++  ++L   +     +     +   HIL+DE QDT+ IQ
Sbjct: 173 IYQVYQESCDRAGLVDFAEILLRAHELWLNKPH---LLAHYQERFKHILVDEFQDTNAIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L                +  VGD+ QSIY + GA+ + + R  R          
Sbjct: 230 YAWIRVLAGQ----------TANVMIVGDDDQSIYGWRGAQVENLHRFLRDFPT------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L  ++RS  +IL   + + +      G                      +LW 
Sbjct: 274 --ATTIRLEQNYRSKGNILKASNALIANNPERLGK---------------------ELW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   + + +  S    F+ + +       AR I   I++                 
Sbjct: 310 ------TDEADGEPISLYCAFNEMDE-------ARFIVGRINDWYEKGG----------N 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++            ++          +   IKD M   R I ++ 
Sbjct: 347 LSDCAILYRSNAQSRVLEEAL----LHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +  T R +  T+++   +       A    S  +  +
Sbjct: 403 DDAAFERVVNTPPRGIGDRTLDILRTTARQQELTLWQACLRLLDEKVLAGRAASAVRGFM 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ- 541
             I  L    Q  + +     ++ A   +  + +  G +     + L+E +      E  
Sbjct: 463 DLIVTLQEETQDMALYRMTDTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMP 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + EL + L        +    A  + V++MT+H+AKGLE  +VF+      +F  
Sbjct: 523 EELEDMGELNAFLSHAALEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                      +    +E  RL YVGMTRA +
Sbjct: 583 KMAL----------------------------------EEGDRLDEERRLCYVGMTRAME 608

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 609 KLYITYAESRR 619


>gi|319937196|ref|ZP_08011603.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1]
 gi|319807562|gb|EFW04155.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1]
          Length = 715

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/543 (17%), Positives = 170/543 (31%), Gaps = 112/543 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K+++ +LDF+DL++ T +L +       I  +  +   +I +DE QD S + +
Sbjct: 173 YDDYEKYKEEHFMLDFDDLLLKTVELFENFPE---ILERWQRRFQYIHVDEFQDVSEVDY 229

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           ++I+ L+               L  VGD  Q+IYSF G++   ++   +           
Sbjct: 230 KLIKYLSGQAV-----------LCVVGDPDQTIYSFRGSDIHFIMNFDKDFP-------- 270

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + L  ++RST  IL + + +    +N                              
Sbjct: 271 DTKTVILDQNYRSTKTILDISNNLIRKNKNRMEKELF----------------------- 307

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                    +  +    S  D   +       A  +  TI  +I  +          +  
Sbjct: 308 -----TELDDGPKVLHYSGVDEEAE-------ANFVCDTIEEIIHKEE--------GVNY 347

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            D  +L R    +              +I           +   IKD ++  R +++ +D
Sbjct: 348 HDFAILYRANYLSRSFEQKL----IQRQIDYRIFGGLKFFNRKEIKDALSYIRLMVN-QD 402

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVIK 486
           DLSF  ++  P        + +I         + YE +  F++          +    +K
Sbjct: 403 DLSFERIVNVPSRGVGAKTLERIQNVAIEYGISNYEALTTFSDEIGLSGKAKKQLIEFVK 462

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            I      A   S  D F  +LG     +   +   +  I  L E              +
Sbjct: 463 CIEN--AKASSLSLPDVFEKLLGDVGYFEMLRNDQDDNRIQNLMELKASIANYMNTHPDT 520

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                S L+       +    +   V +M++H AKGLE   VF+V     VF        
Sbjct: 521 -PTFESYLQDIALYTSQDDVFDDEYVSLMSIHMAKGLEFNYVFVVGLSQDVFPSFRSVSE 579

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                                 EE  RL YV  TRA  +L +  
Sbjct: 580 SGDDG--------------------------------MEEERRLAYVAFTRAKKRLYLTD 607

Query: 667 HSN 669
              
Sbjct: 608 SQG 610


>gi|213965014|ref|ZP_03393213.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46]
 gi|213952550|gb|EEB63933.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46]
          Length = 899

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/691 (14%), Positives = 196/691 (28%), Gaps = 170/691 (24%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++           L  ++   ++E I             +      +   +   Y+   
Sbjct: 199 KDMDLDAKKFTGRVLSSRISNLKNELID--PEKAIADASTTRNPFDDVVARVYLEYQTRL 256

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    +DF+DLI     +         +     +   H+L+DE QDT+  Q+ ++ +L  
Sbjct: 257 RAANAVDFDDLIGEVVRIFTSHP---QVAEYYRRRFRHVLVDEYQDTNHAQYVLVSTLVG 313

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                      P  L  VGD  QSIY+F GA  + +   ++   +         + I L 
Sbjct: 314 KP----GGDVPPSELCVVGDSDQSIYAFRGATIRNIEEFEKDYPE--------ATSILLE 361

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL+  + + +  EN +                        LW       D  
Sbjct: 362 QNYRSTQTILSAANALIARNENRREKK---------------------LW------TDLG 394

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + + + +  +           AR IA  I  ++                 D+ +  R
Sbjct: 395 EGGKIKGYVADNEHDE--------ARFIANEIEQLVDYG---------PYSYSDVAIFYR 437

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +  +         +           +   ++D++A  R I + +DD+S   ++
Sbjct: 438 TNNSSRALEDVF----IRMGVPYTVVGGTRFYERKEVRDIVAYLRVIENFDDDVSLRRII 493

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKF---------ANCGISKFQHVIKYIHELI 492
            +P     +  +  +     +    +    +          A    +     ++ I  L 
Sbjct: 494 NTPRRGIGDRAVAHVSLYAEDERCSFGTALRAVAEGKVSAVAARSRNAMAAFVEMIDGLA 553

Query: 493 HIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------- 539
                       D    I+     + +       +    +D L+E ++            
Sbjct: 554 ADMASGELADIGDLVNAIIDRSGYKSELERSNDPQDATRLDNLNELVSVAREFSAEARMM 613

Query: 540 -------------------------------EQNSYSSLQ-ELISELEQYPPTIKRAHSA 567
                                          E    + L  +  ++ +        +  A
Sbjct: 614 SSVDISADVKEGSGAAADAESGADTSGESEVESGIANDLARDFTADFDNDGEAEPGSLQA 673

Query: 568 -----------------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                            +   V +MT+HTAKGLE PVVFL+     +F H          
Sbjct: 674 FLERVSLVADADQIPDDDTGVVTLMTLHTAKGLEFPVVFLIGWEDGLFPH---------- 723

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                   L          E  RL YVG+TRA  QL + +    
Sbjct: 724 ------------------------LRALGDPKELAEERRLAYVGITRARKQLYLTRAVTR 759

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           S+            + +   +     +    
Sbjct: 760 SSWGSPQNNPPSRFLGEVPSDLIDWLREAPA 790


>gi|167645425|ref|YP_001683088.1| UvrD/REP helicase [Caulobacter sp. K31]
 gi|167347855|gb|ABZ70590.1| UvrD/REP helicase [Caulobacter sp. K31]
          Length = 804

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 101/604 (16%), Positives = 184/604 (30%), Gaps = 120/604 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+E  +     DF DL+++   +         +     +   ++++DE QDT++ 
Sbjct: 212 ALYRQYQERLRILNACDFGDLLLHNITIFTGNPD---VLADFQRRFQYVMVDEYQDTNVA 268

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +            + +  VGD+ QSIY + GAE   +LR +R         
Sbjct: 269 QYLWLRLLAQ----------GRQNVCCVGDDDQSIYGWRGAEVDNILRFERDFP------ 312

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RST  IL     +    ++  G +                     LW
Sbjct: 313 --GAKVIKLERNYRSTEHILAAASGLIDANKSRLGKT---------------------LW 349

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +   ++   +  +D   +        R +A  I                  
Sbjct: 350 -------TEETGGEKVKVSGVWDGEAES-------RMVADAIETAKKAGR---------- 385

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +   + +LVR              L+    I           +   I+D  A  R I S 
Sbjct: 386 KYSHMAILVRASFQMRAFEERFVMLQ----IPYKVVGGPRFFERAEIRDAHAYLRLIQSP 441

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHV 484
           +DDL+F  ++ +P     +  + K+    R +  +  +  +             +   + 
Sbjct: 442 DDDLAFERIVNTPKRGIGDTSVTKLLQIARSQGISTVDAARVIIGGDDLPARTRTALSNF 501

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQ 541
           ++ +     +A           +L             G      ++ L E +      + 
Sbjct: 502 LRDLDRWRALAANTPHQRVMEAVLEESGYTDALRLDKGPTSQTRLENLKELVQSMSAFDT 561

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                   L + LE     +     A  + V IMT+H+AKGLE P+VFL      VF  +
Sbjct: 562 --------LEAYLEHVSLVMDLDKGAGDDAVWIMTLHSAKGLEFPLVFLPGWEEGVFPSQ 613

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             +    +   EE  RL YVG+TRA ++
Sbjct: 614 RS--------------------------------MDDKGEKGLEEERRLAYVGITRAREE 641

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
             I   +N     +   +     V +                               P N
Sbjct: 642 ARISFVANRQVYGRWTSQLPSRFVDELPLAHVDAASETGYYGGGPGMQQTVASRWDEPAN 701

Query: 722 TPLE 725
           T   
Sbjct: 702 TFTA 705


>gi|191168612|ref|ZP_03030395.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B7A]
 gi|309793867|ref|ZP_07688292.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 145-7]
 gi|190901358|gb|EDV61124.1| exodeoxyribonuclease V, beta subunit [Escherichia coli B7A]
 gi|308122274|gb|EFO59536.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 145-7]
          Length = 1180

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER------EETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T    +    +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDKQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      +      D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|325204434|gb|ADY99887.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240355]
          Length = 671

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 110/609 (18%), Positives = 202/609 (33%), Gaps = 116/609 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW ++      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                 +    A  +   I   I    I  +      Q  D  VL R +    +     R
Sbjct: 314 ---ACQNEQHEAEWVVSQI---IKQKLIGGDKT----QYADFAVLYRGKHQARIFEEALR 363

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 +I    +      D   IKD+++  R + +  DD +F+  + +P     +  + 
Sbjct: 364 ----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVTLG 419

Query: 455 KIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           K+         ++YE  Q         N      Q  +         A+     +F   +
Sbjct: 420 KLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFINSL 479

Query: 508 LGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           L         ++      G      + + +++  R       ++ EL   +        +
Sbjct: 480 LEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLEGK 539

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + V + T+H AKGLE P VFLV     V  H                       
Sbjct: 540 D-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN---------------------- 576

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                          +++   EE  RL+YVG+TRA  QL +        +          
Sbjct: 577 -------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEPSR 623

Query: 684 MVYDSFHND 692
            + +    D
Sbjct: 624 FIDEMPQED 632


>gi|293412165|ref|ZP_06654888.1| exodeoxyribonuclease V [Escherichia coli B354]
 gi|291468936|gb|EFF11427.1| exodeoxyribonuclease V [Escherichia coli B354]
          Length = 1183

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 273/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 309  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 368  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------YHQPETALLLIGDPK 419

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 420  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 470  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 520  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 580  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 637  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 689  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 743  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 790  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 850  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 909

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 910  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 969

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      +      D   E+  
Sbjct: 970  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLNQLSGRDKQVEMEF 1026

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1086

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123


>gi|296282686|ref|ZP_06860684.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354]
          Length = 769

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 120/787 (15%), Positives = 228/787 (28%), Gaps = 126/787 (16%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL-----------QQASQTQCIEERF 66
           +  WP     V+  NK      E     I    + +           +   +   +    
Sbjct: 63  RLAWPSEILCVTFTNKAAREMRERVGRHIGDAVEGMPWLGTFHAIGAKMLRRHAELVGLQ 122

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           S  +      +    K +I +    +      +L    D +             ++   +
Sbjct: 123 SNFTIIDPDDQLRLLKTLIAEADLDEKRWPARQLAGLIDRWKNRGLNPGDLDAVENEAYA 182

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 L   Y+   +     DF DL+++  ++ ++    + +  +      +IL+DE Q
Sbjct: 183 NGRGAQLYKTYQARLQSLNACDFGDLLLHMLNIFRQH---SDVLEQYQNRFKYILVDEYQ 239

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q+  +R L +            + +  VGD+ QSIYS+ GAE   +L+ ++    
Sbjct: 240 DTNQVQYLWLRLLAQH----------RKNICVVGDDDQSIYSWRGAEVANILKFEKDFP- 288

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RST  IL     +        G                    
Sbjct: 289 -------GAKVIKLEQNYRSTPHILGAASGLIGENSQRLGK------------------- 322

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             +LW         +       W    +           ARR+   I ++    T     
Sbjct: 323 --ELW---TETDTGEKVRVIGVWDGPEE-----------ARRVGEEIESLERGGTGLD-- 364

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   +I +LVR +  T               ++      F   +   I+D +A  R
Sbjct: 365 --------EIAILVRAQYQTREFEDRF----IQIGMAYRIVGGFRFYERAEIRDALAYLR 412

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH-- 483
            I    DDL+F  +   P        + K+    R     +       A+      +   
Sbjct: 413 VIAQPADDLAFERIYNQPKRGLGAKTLEKMYQHARRTGMPLAAASLDLADSDELPARARG 472

Query: 484 ----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
               +++   +    A   +P +    +L     +    +    E    L+         
Sbjct: 473 TIGGLMRQFLQWREQADSLAPAELLRQVLEESGYQAMLENERTPEAKGRLENLSELARAM 532

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E       + L   LE     +    +A   +V IMT+H AKGLE   +FLV     VF 
Sbjct: 533 E-----DYETLGDFLEHVALVMDNDANAEDAKVTIMTIHAAKGLEFDHLFLVGWEEGVFP 587

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +       +                                ++ EE  RL YV +TRA 
Sbjct: 588 SQRSLDEGGL--------------------------------ASLEEERRLAYVAITRAK 615

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               I   +N     +         + +   +D    +  ++   +       E      
Sbjct: 616 KACTILHAANRRIYGQWTSSLPSRFIEEL-PDDHVESETTMSGGASLWRANWSENDDPFA 674

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
             T    E +  +    Q+     +      + E      S                +  
Sbjct: 675 HVTRDRPERSNNRGPGWQRALATGYETRPARVQESRRSAASFAAKPRDDIALGARVFHDK 734

Query: 780 FNRGLII 786
           F  G ++
Sbjct: 735 FGYGTVM 741


>gi|67459079|ref|YP_246703.1| DNA helicase II [Rickettsia felis URRWXCal2]
 gi|75536488|sp|Q4ULN5|UVRD_RICFE RecName: Full=Probable DNA helicase II homolog
 gi|67004612|gb|AAY61538.1| DNA helicase II [Rickettsia felis URRWXCal2]
          Length = 654

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 112/567 (19%), Positives = 189/567 (33%), Gaps = 121/567 (21%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                + L    +AK +   Y++    + VLDF DL++  N+L  K      I     ++
Sbjct: 160 LSASDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKNPE---ILRYYQEK 216

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +ILIDE QDT+++Q+   R L   +          + +  VGD+ QSIY + GAE   
Sbjct: 217 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 266

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +LR ++             +II+L  ++RST  IL     V +  +N  G +        
Sbjct: 267 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 310

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW     +   +       W+   +           AR IA  I  +
Sbjct: 311 -------------LW---TDRESGEKIKIISCWSDKEE-----------ARYIAGEIDKL 343

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +  D            A +I +LVR    T            +  +           + +
Sbjct: 344 VREDR---------YNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 390

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475
            I+D++A  R  L+Q D+L+   ++  P        + KI         + +  I++   
Sbjct: 391 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRVYALERNISNFAAIKEMLE 450

Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
            G  K       + ++  I          +P +    IL      +        E    I
Sbjct: 451 MGEIKAKPYETLKDLVTKIDNWHERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 510

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584
           + ++E L               ++   +E     ++           V IMT+H AKGLE
Sbjct: 511 ENINEMLRAIAEF--------NDIHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 562

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVFL      VF  +          L ++                             
Sbjct: 563 FDVVFLPGWEEGVFPSQRSLDEEGEKGLEEE----------------------------- 593

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671
               R+ YVG+TRA   L I    +  
Sbjct: 594 ---RRIAYVGITRAKKDLYITHAESRK 617


>gi|108803668|ref|YP_643605.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941]
 gi|108764911|gb|ABG03793.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941]
          Length = 694

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 106/631 (16%), Positives = 193/631 (30%), Gaps = 119/631 (18%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +  Q +    ++R      +              +   Y++   +N  +DF+DLI+ T  
Sbjct: 123 RSFQAQISDAKNRLLGPDDYLRHTEGYVAENVAEVYGLYQQRLYENNAMDFDDLIMQTVA 182

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           L    ++   +R +  +   +I +DE QDT+  Q+ ++  L              R L  
Sbjct: 183 LF---ELFPEVRERYQERFRYIHVDEYQDTNHAQYRLVNILAA----------RHRNLCV 229

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD+ QS+YS+ GA+ + +L  +R   +          +++L  ++RST  IL   + V 
Sbjct: 230 VGDDDQSVYSWRGADIRNILDFERDYPE--------ARVVKLEQNYRSTQTILEAANAVV 281

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +   + +                        LW        +    +     +  D   +
Sbjct: 282 ANNASRKAKR---------------------LW-------TAGEEGEPIRVFAAGDEYAE 313

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  AR +   I  ++              +  ++ V  R    +  +  +      
Sbjct: 314 -------ARFVVSEIRRLLDGG----------ARPSEVAVFYRTNAQSRALEDVL----V 352

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457
              I           +   IKD MA    I +  DD+S   +   P        + ++  
Sbjct: 353 REGIPYQVIGGLRFYERAEIKDAMAYLSVIANPADDVSLERIANVPKRGLGATSLGRLQE 412

Query: 458 TQRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
             R     +YE + +      +         + +        A    P +    ++    
Sbjct: 413 HARRTGSALYESLAEPEAAGLSGRAARACGQLRELFEGWRVAAGEVGPAELVEAVISESG 472

Query: 513 GRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSAN 568
            R +  +    E     D L+E +N     E      SL+  + E   Y      A    
Sbjct: 473 YRDELEAERTVEAEQRLDNLEELINAARAYEMADPEPSLEGFLQEQALYSEQD--ALDTG 530

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V +MT+H AKGLE P VF+V      F H                            
Sbjct: 531 GGSVTLMTLHNAKGLEFPHVFIVGMEEGTFPHARSLD----------------------- 567

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                       +   EE  RL YVG+TRA   L +      S+  +   R     + + 
Sbjct: 568 ------------EQNLEEERRLCYVGITRAMRSLTLSYARVRSSWGEREPRMPSRFLSEI 615

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               +          +        E     P
Sbjct: 616 PERFKAGGPSGGGWGLLARGRRRREEVAPPP 646


>gi|161830545|ref|YP_001597082.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331]
 gi|161762412|gb|ABX78054.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331]
          Length = 1110

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 149/910 (16%), Positives = 304/910 (33%), Gaps = 138/910 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRD 112
               + +  +++ FLT++   +K +          ++  ++  DL  +L K+ ++     +
Sbjct: 274  DEADLWRGIATLFLTKEGLWRKKLDKNDGFPVEDKKHKQRMKDLLSQLNKN-EKLRLALN 332

Query: 113  RFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                      T          +++   L A      ++   +DF ++ +     L   + 
Sbjct: 333  EVKNCPPIAYTEKQWNIIHGLVSILPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQ 392

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             +    ++D +I H+LIDE QDTS+IQ+ +I  L   +          RTLF VGD  QS
Sbjct: 393  PSDYALQLDGQIQHLLIDEFQDTSIIQFHLIEKLITGWQPKDG-----RTLFLVGDPMQS 447

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  AE    L+ K            + + + L  +FRS  +++   ++ F      +
Sbjct: 448  IYRFRQAEVGLFLQVKNE-----GLGEIQLTPLTLRNNFRSQKNLIDWFNQTFEPTFPKE 502

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              S   + +  H                     ++  N +  ++ S  ++     +A   
Sbjct: 503  ENSHLGSISYSH-----------------SFATNNSINQKNINFYSLLNA-----NALNE 540

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +I   I      +             K I +LVR R     IT   R       I   
Sbjct: 541  ATQIVKIIQGCRSENPE-----------KTIAILVRSRSQLIEITPALRS----ADIPFH 585

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
              +   L   + I+DL++L R +    D ++++ +L++P    +  D+  +    ++   
Sbjct: 586  AVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYANDKPI 645

Query: 466  VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                          + G ++   +   +              +   I  A  G     + 
Sbjct: 646  WVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGGPACLSNS 705

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                      + L         +  +L+ L  +L Q    I        N ++IMT+H A
Sbjct: 706  TELMNTQAYFQLLETL-----ENDFTLERLTQKLNQLYAQIDTDA---KNPIQIMTIHKA 757

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLIK 637
            KGLE   V L     +  S  H   + +           I  P    S+  + + + L +
Sbjct: 758  KGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKR 817

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDE 693
              K+ T  E  RLLYV  TRA + L +    N  +     K   + ++ ++++       
Sbjct: 818  IEKEKTTNEITRLLYVAATRAKESLHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQEAF 877

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                I   +++   +                   + +++L  +   P  L +    +   
Sbjct: 878  EQSIIIFDDTLPSQKGG----------------LKLLRRLTSDWAPPFILKTLPSAESKP 921

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----Y 808
                 P++                     G++IH+ L+ I                   +
Sbjct: 922  LTPFTPASSK-----------------RLGIVIHETLERIANEGLESWDKERIENNKSFW 964

Query: 809  CTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKD 861
              +  +L  + E        ++ ++++ L +      +S      SE  ++      +  
Sbjct: 965  QRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPIT----LVEDK 1020

Query: 862  IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKILKDSYP 916
             I    ID   I +    +I +YK+     + ++         H AQL  Y         
Sbjct: 1021 KIKHFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEAQLQQYANAFHALDS 1080

Query: 917  NKSLVCLLIY 926
             + +   L +
Sbjct: 1081 -RPIKLGLYF 1089


>gi|204928170|ref|ZP_03219370.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
 gi|204322492|gb|EDZ07689.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
 gi|322613394|gb|EFY10335.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315996572]
 gi|322639429|gb|EFY36117.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 531954]
 gi|322655186|gb|EFY51496.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. CASC_09SCPH15965]
 gi|322664085|gb|EFY60284.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 81038-01]
 gi|322673102|gb|EFY69209.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 414877]
 gi|322677907|gb|EFY73970.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 366867]
 gi|322681082|gb|EFY77115.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 413180]
 gi|322685678|gb|EFY81672.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 446600]
 gi|323244617|gb|EGA28623.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315731156]
          Length = 1181

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 124/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       ST     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGSTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|325132192|gb|EGC54888.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M6190]
 gi|325138125|gb|EGC60698.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ES14902]
          Length = 671

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 111/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW ++      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + + +++  R       ++ EL   +       
Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVSDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|308187972|ref|YP_003932103.1| exodeoxyribonuclease V beta chain [Pantoea vagans C9-1]
 gi|308058482|gb|ADO10654.1| exodeoxyribonuclease V beta chain [Pantoea vagans C9-1]
          Length = 1179

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 144/972 (14%), Positives = 300/972 (30%), Gaps = 141/972 (14%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEER 65
            + N +     K  W      V  +     +   + +   L    A+  Q AS      + 
Sbjct: 224  ARNLARIEAIKQQWQALSADVEGMISASGVDKRSYSSKHLPNWVAKVTQWASSETLDYQL 283

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L  F          +  T++ +     L E + +   E + +RD             
Sbjct: 284  PKELERF-----GQQVLDEKTKKGDAPRHSLFEAIDQFLAEPLSLRDVIIA--------- 329

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                   +    +  K+   +L F+DL+   ++ L++      +   I       LIDE 
Sbjct: 330  --QALTDVRTTVQREKRLRALLGFDDLLSKLDEALQQPG-GVLLAETIRARFPVALIDEF 386

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT   Q+ + R+L          +   + LF +GD KQ+IY+F GA+    LR +    
Sbjct: 387  QDTDPQQYRIFRTLY--------INQPEQALFLIGDPKQAIYAFRGADIFTYLRARSEVS 438

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
               T          L  ++RS+ +++  V+++FS  ++    S      ++  +      
Sbjct: 439  AHYT----------LDTNWRSSPEMVESVNRLFSQLDSPFLFSAIPFLPVKPAAPNES-- 486

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---- 361
                    +    D Q  P    W    + +        +A++ A  IS  +        
Sbjct: 487  --------LKLIFDEQQQPALRFWLQPGEGVGNSDYQQFMAQQCAADISRWLVAGQQGRA 538

Query: 362  -IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             +      + ++A DI VLVR R +  LI      L      SV  + R  +      ++
Sbjct: 539  WLGKGEALQPVRASDITVLVRSRNEAGLIRDALNALSIP---SVYLSSRDSVYTTPEARE 595

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+ L + I + E +      L + +F      +  +     E + + E            
Sbjct: 596  LLWLLQAIQAPEQERLLRSALATSIFAIDAATLDALTQNEREWDALVEQFAV-------- 647

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---L 537
            +Q +      L  +            +L ++ G ++            L E L      L
Sbjct: 648  WQQLWHQRGVLPMLRDVMIKRQLAENMLASENGERRLTDLM------HLGELLQEASVQL 701

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +       L + I+       + +    ++ + V+I+T+H +KGL+ P+V+L       
Sbjct: 702  ESPHALVRFLAQQIARPNSQASSQQLRLESDRHLVQIITIHKSKGLQYPLVWLPFAAGFR 761

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             +   +       +   D                 +  +   ++    E  RLLYV +TR
Sbjct: 762  EAASALYHDRDNFTALLDVQGD-------------AQSLALAEEERLAEDLRLLYVALTR 808

Query: 658  ASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL----------- 700
            +          +I        E   ++     +V      D +    +L           
Sbjct: 809  SVYHCSVGIAPLIKGTRKKEGESDLHKSALGYLVQQGQAADAQQLSQRLNALTGEGIALV 868

Query: 701  -TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
              + ++ + W   E       +  + R       +      ++  S    D    + ++ 
Sbjct: 869  EEDLLSGEMWRDAEQGDEALSSRDVTRALADVWRVTSYSGLQQHHSSPLLDALPNFDIDA 928

Query: 760  STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
            +  +  G+    +     +    G  +H L + I       R             L    
Sbjct: 929  AGEEENGEEAALTPHHFPRGAAPGTFLHGLFESIDFTEPPDRIWLEDQLQHNGYPLSWLP 988

Query: 820  EYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSV------------------------- 851
              +  +  +    L      ++   S +   E+                           
Sbjct: 989  VIEQWIDRVLHTPLNAEGLTLSAIKSSERLIEMEFYLPINNLLTAADLDDLLRRHDTLSQ 1048

Query: 852  -SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THI 901
             +  ++  +   ++ G ID +   Q   ++ +YK++        + P           + 
Sbjct: 1049 QAAPLDFRQVRGMLKGFIDLVFRWQGKYYLLDYKSNWLGESHAAYTPEAMAQAMIGHRYD 1108

Query: 902  AQLSIYEKILKD 913
             Q  +Y   L  
Sbjct: 1109 LQYQLYTLALHR 1120


>gi|304387165|ref|ZP_07369409.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC 13091]
 gi|304338769|gb|EFM04879.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC 13091]
          Length = 671

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW ++      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + + +++  R       ++ EL   +       
Sbjct: 478 SLLEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|167036387|ref|YP_001671618.1| DNA-dependent helicase II [Pseudomonas putida GB-1]
 gi|166862875|gb|ABZ01283.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 728

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 118/721 (16%), Positives = 230/721 (31%), Gaps = 132/721 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   Q S  +             + ++ + L   +        
Sbjct: 33  GAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGMWVGT 92

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--K 109
           F              + L   F       Q+ +I + + +   D ++   +    FI  +
Sbjct: 93  FHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMRELGLDEQKWPARQAQWFINGQ 152

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +      +       L   + +   YE+A ++  V+DF +L++   DL +       +
Sbjct: 153 KDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPG---L 209

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   H+L+DE QDT+ +Q+  +R L               +L AVGD+ QSIY +
Sbjct: 210 LEHYQRRFQHVLVDEFQDTNAVQYAWLRLLAR----------GGASLMAVGDDDQSIYGW 259

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                 +I L  ++RST  IL   + + +      G   
Sbjct: 260 RGAKIENIHQYTADFP--------DAEMIRLEQNYRSTGGILKAANALIANNSGRLGK-- 309

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW             +  +  + ++   +       AR +
Sbjct: 310 -------------------ELW-------TDMGEGEPLTLYAAYNEHDE-------ARYV 336

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
             TI +++                 +I +L R    + ++           +I       
Sbjct: 337 VETIESLVKQGNAR----------NEIAILYRSNAQSRVLEEAL----LRERIPYRIYGG 382

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IK+ MA  R I  + +D +   ++  P     E  +  I    RH   +++E
Sbjct: 383 QRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWE 442

Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519
            + +       K          I+ I  L         H      +         Q+   
Sbjct: 443 AMCQLLAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTIEQSGLILYHQEEKG 502

Query: 520 RFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
             G   ++ L+E ++     E  +  + L  L + L              + + +++MT+
Sbjct: 503 EKGQARVENLEELVSAARNFESADEDADLSPLSAFLGHASLEAGDTQADEHEDSIQLMTL 562

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VFLV     +F HK   +                                
Sbjct: 563 HSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG----------------------------- 593

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA  QL++                    V +      +  +
Sbjct: 594 -----RLEEERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPPGLVQEVR 648

Query: 698 I 698
           +
Sbjct: 649 L 649


>gi|255002962|ref|ZP_05277926.1| DNA helicase II [Anaplasma marginale str. Puerto Rico]
 gi|269958969|ref|YP_003328758.1| DNA helicase 2 [Anaplasma centrale str. Israel]
 gi|269848800|gb|ACZ49444.1| DNA helicase 2 [Anaplasma centrale str. Israel]
          Length = 661

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 108/612 (17%), Positives = 189/612 (30%), Gaps = 123/612 (20%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTL--A 125
           L   F       Q  +I   +N   P    E+ KK      + +++         T    
Sbjct: 122 LRRDFTVIGPDDQLQLIKAIVNDTQPGHPAEECKKMMHAIQRWKEKGLLPAGVTDTELQK 181

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              + + +   Y+E  K     DF DL++    +       A +     ++  ++++DE 
Sbjct: 182 CPNIVRDVYYEYQERLKALNCADFGDLLLYNVSMFSAH---ADVLSHYQEQFKYVMVDEY 238

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +Q+  +R + +            + +  VGD+ QSIYS+ GAE   +LR      
Sbjct: 239 QDINTVQYLWLRLIVQ----------KRKNICCVGDDDQSIYSWRGAEVGNILRFADDFP 288

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +          I+ L  ++RST++IL     + +  ++  G                   
Sbjct: 289 E--------AKIVRLECNYRSTSNILCAASAIINNNKSRLGKK----------------- 323

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW    + H  Q     + W              + A+ I+  I            
Sbjct: 324 ----LW---TTNHAGQKVGLMKFWDG-----------RMEAQFISEYIK----------- 354

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +  +  +LVR    T +             I           D   IKDL+A  
Sbjct: 355 -GSSEYRFDETAILVRAGFQTRVFEEYL----VRCGIPYKIIGSTKFYDRQEIKDLVAYL 409

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGI 478
           R + + ++D++F  ++  P        + K+    R    ++ E                
Sbjct: 410 RVVTNPKNDIAFERIVNKPKRQLGASTVAKMRAYARDNRLSLLESGESMIRFGLLPERTS 469

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFT 536
           +  Q+++             S       I                    I+ + E     
Sbjct: 470 NTLQNLLDKFKCWRETLDTTSLTTVMQAIAEGSGYMNMLKDEGDAGASKIENIRELFAAV 529

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              E        + +  +         +    +N V +MT+H AKGLE P+VFL      
Sbjct: 530 GNFENA-----TKFLEHISLVTEVD--SPEQANNHVYLMTLHAAKGLEFPLVFLPGWEEG 582

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           VF H+                                           EE  RL YVGMT
Sbjct: 583 VFPHEKSIHDSTGN--------------------------------ALEEERRLAYVGMT 610

Query: 657 RASDQLIICKHS 668
           RA +QL I   +
Sbjct: 611 RAREQLFISCVA 622


>gi|206559816|ref|YP_002230580.1| putative helicase [Burkholderia cenocepacia J2315]
 gi|198035857|emb|CAR51748.1| putative helicase [Burkholderia cenocepacia J2315]
          Length = 818

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 118/749 (15%), Positives = 223/749 (29%), Gaps = 161/749 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 127 LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 180

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T         L   Y++  ++  V+DF +L++   +LL      A +R  
Sbjct: 181 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 237

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 238 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 287

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  + 
Sbjct: 288 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 339

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + S+ S  A  I   
Sbjct: 340 ---------AGHGEPVRVY--------------------------EASTDSQEAGWIVEE 364

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I T           +   ++ VL R    +  I            I          
Sbjct: 365 IRSLINTG----------MARSEVAVLYRSNAQSRSIEHTL----MSSGIPYRVYGGLRF 410

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 411 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYGCSMAAAIP 470

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        I ++    Q  +  D    I+ A      +   R G + ++ L 
Sbjct: 471 YVTGKAGTSLGGFANLIAKMRADTQHMNLPDTVEHIVRASGLADFYQGEREGQDRLENLQ 530

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 531 ELVNAATAFIAEEGYGLDTPARSIPLRAGAIAAPELGTATDDPAVDVLDPASPADPAQNP 590

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 591 DTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 650

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 651 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 676

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++  +        A          
Sbjct: 677 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGYGRDWFARP 736

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKND 750
               RE+ +   +              + 
Sbjct: 737 GGGSREQIVDAAVSAPLPAFADKQRAADA 765


>gi|322620986|gb|EFY17844.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-1]
 gi|322624049|gb|EFY20883.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-3]
 gi|322628211|gb|EFY25000.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-4]
 gi|322633330|gb|EFY30072.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-1]
 gi|322636092|gb|EFY32800.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-2]
 gi|322643708|gb|EFY40260.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. NC_MB110209-0054]
 gi|322648821|gb|EFY45268.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. OH_2009072675]
 gi|322657983|gb|EFY54251.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 19N]
 gi|322667053|gb|EFY63225.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. MD_MDA09249507]
 gi|323194817|gb|EFZ80004.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609458-1]
 gi|323196568|gb|EFZ81716.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556150-1]
 gi|323205018|gb|EFZ90001.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609460]
 gi|323207780|gb|EFZ92726.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 507440-20]
 gi|323212667|gb|EFZ97484.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556152]
 gi|323214849|gb|EFZ99597.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB101509-0077]
 gi|323222579|gb|EGA06944.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB102109-0047]
 gi|323226458|gb|EGA10666.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB110209-0055]
 gi|323230662|gb|EGA14780.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB111609-0052]
 gi|323234987|gb|EGA19073.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009083312]
 gi|323239025|gb|EGA23075.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009085258]
 gi|323247232|gb|EGA31198.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2009159199]
 gi|323253285|gb|EGA37114.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008282]
 gi|323256408|gb|EGA40144.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008283]
 gi|323262416|gb|EGA45972.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008284]
 gi|323267488|gb|EGA50972.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008285]
 gi|323269108|gb|EGA52563.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008287]
          Length = 1181

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 124/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       ST     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGSTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|121635136|ref|YP_975381.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18]
 gi|120866842|emb|CAM10600.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18]
          Length = 690

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 111/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 146 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 205

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 206 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 252

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 253 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 304

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW ++      +             
Sbjct: 305 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 332

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 333 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 380

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 381 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 436

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 437 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 496

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + + +++  R       ++ EL   +       
Sbjct: 497 SLLEEIDYENHLMQNEEGKAGEIKWRNVSDLVSWFARKGGEDGKNIIELAQTVALMTLLE 556

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 557 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 595

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 596 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 640

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 641 SRFIDEMPQED 651


>gi|193071405|ref|ZP_03052320.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E110019]
 gi|260856932|ref|YP_003230823.1| exonuclease V, beta subunit RecB [Escherichia coli O26:H11 str.
            11368]
 gi|192955267|gb|EDV85755.1| exodeoxyribonuclease V, beta subunit [Escherichia coli E110019]
 gi|257755581|dbj|BAI27083.1| exonuclease V, beta subunit RecB [Escherichia coli O26:H11 str.
            11368]
          Length = 1180

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 275/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            ++  +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VELAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|317502698|ref|ZP_07960810.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606]
 gi|315666184|gb|EFV05739.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606]
          Length = 761

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 104/637 (16%), Positives = 190/637 (29%), Gaps = 122/637 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++  +    +DF+DL++ T  L K+ D    IR K  +   ++L+DE QDT+ +
Sbjct: 175 QIYQTYQQRLQTANAMDFDDLLVLTWRLFKEHDD---IRIKYAERFKYVLVDEYQDTNYV 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++  LT++             + AVGD+ QSIY F GA    +L  ++I  +     
Sbjct: 232 QQCIVLQLTQE----------HHHVCAVGDDAQSIYGFRGANIDNILDFQKIYPE----- 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                + +L  ++RST +I+   + +    +            I          G   + 
Sbjct: 277 ---TKLFKLEQNYRSTQNIVQAANSLILHNK----------RQIHKDVYSRNAKGEKLVL 323

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             V S  +                          A  +   I  +   +           
Sbjct: 324 RPVYSDKE-------------------------EAAVVCRYIKQLQLKEH---------F 349

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + +     R       I               IKD++A  R +++ 
Sbjct: 350 NYSDFAILYRTNSQSRIFEEEMR----RQTIPYRIFGGMSFYQRKEIKDVLAYFRVVVNP 405

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYE-------YIQKFANCGISKFQH 483
           ED+ +   ++  P        I KI    H   E+ +        +  K  N  ++K + 
Sbjct: 406 EDEEAIRRIINYPTRGIGASTIEKIIACAHLNHESFWSILNSPVKFGLKVNNGTLNKLRS 465

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN- 539
             + +   I        +     I+   +  +   S    E     + ++EF+N      
Sbjct: 466 FTELMSSFIEKVDTMDAYQLGVKIIQESEINKDIFSSTDPEAISRQENIEEFVNGLQDFV 525

Query: 540 ------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                  +  YS L + + E+                +V +MT+H AKGLE P VF+V  
Sbjct: 526 ESRCEEGREEYSKLTDFLQEVSLLTDVE-SDDDKEGEKVSLMTIHAAKGLEFPTVFIVGM 584

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F                                                     YV
Sbjct: 585 EENIFPSPMSSSSARELEEERRLL----------------------------------YV 610

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +TRA     +    N     K    T    + +       +      +           
Sbjct: 611 AITRAEQYCFLTCAKNRWRFGKLEFGTPSRFLNEIDPAFMEIFSDDFVSERPSRPVSPKP 670

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
             T         R   I  ++ +    +    PI   
Sbjct: 671 TFTAASIRPAKLRPVKIPPVVSKNHADQPTSQPISTA 707


>gi|297182254|gb|ADI18424.1| superfamily I DNA and RNA helicases [uncultured delta
           proteobacterium HF4000_08N17]
          Length = 674

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 101/611 (16%), Positives = 189/611 (30%), Gaps = 116/611 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y++  K    +DF+D++  T  L +K      +   + +   +I++DE QD
Sbjct: 167 QMIGKIYRQYQKTMKGCNAIDFDDILNLTLSLFEKHPE---VMDNLTERFRYIMVDEYQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ++++R LT+            R L  VGD+ QSIY + GAE + +   ++   + 
Sbjct: 224 TNRIQYKLLRHLTKQ----------HRNLCVVGDDDQSIYGWRGAEVRNIFDFEQDYPE- 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RST  IL   ++V SI                           
Sbjct: 273 -------VKYVRLEQNYRSTQIILQAANQVISINTQRMPKK------------------- 306

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW         +    +  W    +   +    +   RRI   I              
Sbjct: 307 --LW-------SEKQGGVKLDWLQSENEAEEVEVVT---RRIRTKILQ------------ 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  +L R    +  +    R  K    I           D   I+D +A  + 
Sbjct: 343 -HGNRYLDFSILYRSNFQSRSLEEALREAK----IPYRVVGGTSFYDRQEIRDALAYLKV 397

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH---- 483
           I +  D++S   ++ +P     +  + +  T   E       +   A       ++    
Sbjct: 398 IHNPNDEVSLHRIINTPRRGIGKTALVQANTCCQEMHLPLFKVMLRARKYEKIPKNAAFT 457

Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNF 535
                  I             + F  +L      +   ++          +  + E L+ 
Sbjct: 458 MEMFAGIIINYQQRFANERFANVFKELLDEVGYIRFLETQSGEPKLRERRVKNVLELLSG 517

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                  +         E             +  N+V IMT+H+AKGLE P VF++    
Sbjct: 518 IRTYSDKNPEDSLRQYLERTTLFTENDNDADSKANQVSIMTLHSAKGLEFPFVFMIGMSE 577

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F ++                                       +   +E  RL YVG+
Sbjct: 578 GLFPNQRSLD-----------------------------------EGRVDEERRLCYVGI 602

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA  +L      +     +  ++     + +       V  I   +   K E      S
Sbjct: 603 TRAQQELTFSMAKSRKRFGEIIRQDPSRFLLNINPELLTVPIIGEASEEVKKERRQESRS 662

Query: 716 THHPENTPLER 726
               +   +E 
Sbjct: 663 AFFTQFKQIEA 673


>gi|16761770|ref|NP_457387.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Typhi str. CT18]
 gi|29143254|ref|NP_806596.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Typhi str. Ty2]
 gi|168261856|ref|ZP_02683829.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
 gi|25289143|pir||AB0865 exonuclease V chain [imported] - Salmonella enterica subsp. enterica
            serovar Typhi (strain CT18)
 gi|16504072|emb|CAD02818.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
            Typhi]
 gi|29138887|gb|AAO70456.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
            Typhi str. Ty2]
 gi|205349278|gb|EDZ35909.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
          Length = 1181

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|74313388|ref|YP_311807.1| exonuclease V subunit beta [Shigella sonnei Ss046]
 gi|73856865|gb|AAZ89572.1| DNA helicase ATP-dependent dsDNA/ssDNA exonuclease V subunit
            [Shigella sonnei Ss046]
          Length = 1180

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|107022515|ref|YP_620842.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054]
 gi|105892704|gb|ABF75869.1| ATP-dependent DNA helicase UvrD [Burkholderia cenocepacia AU 1054]
          Length = 846

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 117/748 (15%), Positives = 223/748 (29%), Gaps = 161/748 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 155 LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 208

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T         L   Y++  ++  V+DF +L++   +LL      A +R  
Sbjct: 209 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 265

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 266 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 315

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  + 
Sbjct: 316 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 367

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + S+ S  A  I   
Sbjct: 368 ---------AGHGEPVRVY--------------------------EASTDSQEAGWIVEE 392

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I T           +   ++ VL R    +  I            I          
Sbjct: 393 IRSLINTG----------MARSEVAVLYRSNAQSRSIEHTL----MSSGIPYRVYGGLRF 438

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        + ++    R    ++   I 
Sbjct: 439 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSVEQLADAARLYGCSMAAAIP 498

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        I ++    Q  +  D    I+ A      +   R G + ++ L 
Sbjct: 499 YVTGKAGTSLGGFANLIAKMRADTQHMNLPDTVEHIVRASGLADFYQGEREGQDRLENLQ 558

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 559 ELVNAATAFIAEEGYGLDTPARSIPLRAGAIAAPELGTATDDPAVDVLDPASPADPAQNP 618

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 619 DTMTPLAGFLSHAALEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 678

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 679 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 704

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++  +        A          
Sbjct: 705 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGYGRDWFARP 764

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKN 749
               RE+ +   +              +
Sbjct: 765 GGGSREQIVDAAVSAPLPAFANKQRAAD 792


>gi|163741587|ref|ZP_02148978.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10]
 gi|161385321|gb|EDQ09699.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10]
          Length = 786

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 106/664 (15%), Positives = 192/664 (28%), Gaps = 121/664 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
              A Y+   K    +DF DL+++   + +       +  +  +    I++DE QDT++ 
Sbjct: 195 DFYAQYQARLKDLNAVDFGDLLLHMVTIFQDNPD---VLEQYQRWFRFIMVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L            + + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLAG----------AHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +++ L  ++RST  IL+    V        G                      +LW
Sbjct: 296 --GATVVRLEQNYRSTEHILSAASGVIRGNSGRLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++     ++D   +       AR I   I  M              I
Sbjct: 333 -------TESRGGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGLAPI 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              ++ +LVR                    +           + L I+D MA  R ++S 
Sbjct: 374 DLNNMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRQVISP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484
           +DDL+F  ++ +P     +     I T          E   +     +    G      +
Sbjct: 430 DDDLAFERIVNTPKRGLGDKAQQTIQTMARSNGVSLVEGARLAVESGQIKGKGGKALHQL 489

Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           +  +     +A     +  +   +IL        + +    +    ++ L E +      
Sbjct: 490 VTDLARWGRLAGDADTTHMELAEIILDESGYTTMWQTDKNPDSPGRLENLKELVKALEAF 549

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +         +V IMT+H AKGLE P VFL      +F 
Sbjct: 550 EN--------LQGFLEHVSLIMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 601

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 602 SQRS--------------------------------MDESGLKGLEEERRLAYVGITRAE 629

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +   I      +  ++   +    +               LT                  
Sbjct: 630 EICTIS----FAGNRRVFGQWQSQLPSRFIDELPEENVEVLTPPGLYGGGYGAAAPGGGG 685

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                  +             K++ S            + S++     T+   +      
Sbjct: 686 AVRSTIEDRMAAADGYNSPGWKRMQSRAGERGLSQPRESKSSVIDLTATSAFMVGERVFH 745

Query: 780 FNRG 783
              G
Sbjct: 746 QKFG 749


>gi|304313385|ref|YP_003812983.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1]
 gi|301799118|emb|CBL47361.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1]
          Length = 738

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 115/689 (16%), Positives = 217/689 (31%), Gaps = 130/689 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    +S                +  + QTL Q  Q       
Sbjct: 35  GAGSGKTRVLVHRIAWLVIARGLSPRGILAVTFTNKAAAEMRHRLQTLLQIPQGAMWVGT 94

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKI 110
           F              + L   F       Q+ ++ + + + +  + +  ++++Q      
Sbjct: 95  FHGIAHRLLRLHWQEAKLPEQFQVMDSDDQQRVLKRVMREMQLEEARWPVRQAQSYINSH 154

Query: 111 RDRFNTYKMFKSTLASL-TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +D        +            +   Y+ A +   ++DF +L++ +++L         +
Sbjct: 155 KDEGKRPAHIQHFGDVYNRTMVEVYERYQAACEVGGLVDFAELLLRSHELWLHHPE---L 211

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                Q   H+L+DE QDT+ +Q+  +R L              + +  VGD+ QSIY +
Sbjct: 212 LRHYQQRFRHVLVDEFQDTNGVQYAWLRVLVGQ----------EQGITIVGDDDQSIYGW 261

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R                  + L  ++RSTA+IL   + V        G   
Sbjct: 262 RGAKVENIQRFSEDF--------GGAETVRLEQNYRSTANILNAANAVIGCNRERLGK-- 311

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              QLW             +  S    F+ L +       AR +
Sbjct: 312 -------------------QLW-------TEGKPGEPISVYPAFNDLDE-------ARFV 338

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I   +                +DI +L R    + L+            +       
Sbjct: 339 VERIQQHL----------HESFSYRDIAILYRSNAQSRLLEEAL----MKAGVPYRIYGG 384

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               D L I++ +A  R I  + DD +F  +L  P     E  + +I    R   ++++ 
Sbjct: 385 QRFFDRLEIRNALAYMRLINYRHDDAAFERVLNVPPRGIGERTVEQIREEARRLGQSMWI 444

Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                   +  +    +  +  +  I  +       S  D    ++ A    +      G
Sbjct: 445 ASLSLLEYRGLSARAGNALRAFLGLIEHMHQETLELSLADLIDHVVNASGLYEYHEKEKG 504

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           +      + L E +N     E     +   L   + +         +     V++MT+H 
Sbjct: 505 DRGEVRTENLRELINAAREFEVEDEIAQSPLQEFISRAALEAGDGSTDTEEAVQLMTLHA 564

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VF+V     +F                                         
Sbjct: 565 AKGLEFPLVFMVGVEEGLFPSTQSN----------------------------------E 590

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             S  EE  RL YVG+TRA  +L +    
Sbjct: 591 DPSRLEEERRLCYVGITRAMKKLYMTYAE 619


>gi|218555369|ref|YP_002388282.1| exonuclease V subunit beta [Escherichia coli IAI1]
 gi|218362137|emb|CAQ99746.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli IAI1]
          Length = 1180

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  ++     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIEQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFNQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|253690332|ref|YP_003019522.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251756910|gb|ACT14986.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 720

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 116/728 (15%), Positives = 226/728 (31%), Gaps = 144/728 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  +   L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIDHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D +++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHMDANLPQDFQILDSEDQLRLLKRLIRALNLDEKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +           + +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WFINGKKDEGLRPQHIESYGNPIEQTWQRVYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                +     +   +IL+DE QDT+ IQ+  IR L  D             +  VGD+ 
Sbjct: 204 PH---VLNHYRERFTNILVDEFQDTNRIQYAWIRMLAGD----------SAKVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + +    +               I L  ++RST++IL   + + +    
Sbjct: 251 QSIYGWRGAQVENIQLFLKDF--------AGAETIRLEQNYRSTSNILKAANALIAHNGG 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RLGKN---------------------LW-------TDGVEGEPISLYCAFNELDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR +   I                    KD  +L R    + ++            + 
Sbjct: 330 --ARYVVNRIKTWQENGGAL----------KDNAILYRSNAQSRVLEEAL----LQQSMP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD ++  R I ++ DD +F  ++ +P     +  +  +    R  
Sbjct: 374 YRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDR 433

Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +             +  Q  I+ I  L +       H     ++        
Sbjct: 434 QLTLWQATRALLQEKVLAGRAAASLQRFIELIDALAYETSELPLHVQTDRVIKDSGLWSM 493

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G +    ++ L+E +  T +   Q     L  L + L        +    AN + 
Sbjct: 494 YEQEKGEKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAALEAGEGQADANQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA ++L I    +     K         V +    
Sbjct: 591 -----------RLEEERRLAYVGVTRAMEKLTITYAESRRLYGKEAYHRPSRFVGELPEE 639

Query: 692 DERVKKIK 699
                +++
Sbjct: 640 CVEEVRLR 647


>gi|34762638|ref|ZP_00143631.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887718|gb|EAA24794.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 693

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 105/546 (19%), Positives = 182/546 (33%), Gaps = 117/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y     ++  +DF D+++NT  LL+K +    I  K+  +  +I+IDE QDT+ +
Sbjct: 125 EVYDKYNRVLLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 180

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +          
Sbjct: 181 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFETNYNN----- 225

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST  IL   +++    ++++                        LW
Sbjct: 226 ---AKIIKLEENYRSTTTILDAANELIKNNKSSRDKK---------------------LW 261

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              +  ++  + S       RI   I                 I
Sbjct: 262 -------TQNGKGDLIKVLACDNARDEVS-------RIIEIIKENHQNG----------I 297

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D+ +L R    + +           Y I               IKD++A    I++ 
Sbjct: 298 AYRDMTILYRTNAQSRVFEEGL----LRYSIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 353

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484
           +D+L+   ++  P     E  + KI    R     + E +               K   +
Sbjct: 354 QDELNLQRIINVPKRKVGEKGVEKIIAYARENNLNLLEALSHIKEISGLTAVGKEKLLEM 413

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN 542
              I EL  ++   +       ++   K        +      I+ +DEF N  L  E  
Sbjct: 414 YDIIKELKDLSYTETASYIVQTLIDKIKYIDYIKENYDDAEARIENIDEFKNSILELE-- 471

Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      L   LE     +         + V++MT+H +KGLE P+VFLV   +++F   
Sbjct: 472 NVVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGS 531

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                 ++   EE  RL YV +TRA  +
Sbjct: 532 ----------------------------------RAMFEEKEMEEERRLCYVALTRAEKK 557

Query: 662 LIICKH 667
           L +   
Sbjct: 558 LYLSHA 563


>gi|302869750|ref|YP_003838387.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302572609|gb|ADL48811.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 1134

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 128/1007 (12%), Positives = 246/1007 (24%), Gaps = 174/1007 (17%)

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD--LKEKLKKSQDEFIKIRDRFN 115
                ++   S ++   L       ++++  +           +   +    +  +R    
Sbjct: 178  DMSEVDRMPSTITDAVLALAGELDEHLVDPDELAAWTGRFFADVQSRPGRVYADVRKALQ 237

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
              +     L  +         Y   K     +DF D +     + +       I      
Sbjct: 238  LQRTRLKLLPLVR-------AYARRKDDFEAMDFADQLARAARVARDHPGVGVI---ERD 287

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                +L+DE QDTS  Q  ++ +L                + AVGD  QSIY + GA   
Sbjct: 288  RFRVVLLDEYQDTSHAQVVLLNALFG----------GGHPVTAVGDPCQSIYGWRGASAG 337

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
             + R      +     G    ++ L  S+R+  +IL V + +                ++
Sbjct: 338  TLDRFPAEFAR---TDGSPADVLSLTTSWRNRPEILGVANTL----------------SV 378

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
              R++                        Q                A  +A  +   ++ 
Sbjct: 379  PLRAAGARVPELHAALSVRDPIPHRTPGGQAGGTVHCALLETYADEADWIADSV---LAA 435

Query: 356  MIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
              G   +           +     VLVR R   P I    R       + V       L 
Sbjct: 436  WRGAAGMPGALPEHIPADRRPTTAVLVRLRSQIPAIEAALRA----RGLPVDVVGLGGLL 491

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------ 461
            D   ++D++   R +    D  + + +L    +     D+  +  +              
Sbjct: 492  DTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIARSRRELTGD 551

Query: 462  ----------ETETVYEYIQKFANCGISKFQHVIKYIH------ELIHIAQFCSPHDFFT 505
                      +  T+ E +                 +        L+      S  +   
Sbjct: 552  EGPEITVDALDEATLVEALADLGPAQAYS-AEGYARLRSYGMELALLRYRLDQSLPELIA 610

Query: 506  LILGAKKGRQQFISRFGNE-------VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQY 557
             I        +   R G +           LD   +   R   +   ++L   ++ L   
Sbjct: 611  DIERTIGLDVEVAVRAGRDGAGDAGLARAHLDALGDVAARFSGETPGATLAGFLAYLAAA 670

Query: 558  PPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                              V+++T H AKGLE  VV +      V+        H +  L 
Sbjct: 671  EDEERGLAPGEVEVVAGAVQVLTAHAAKGLEWDVVAVAGMTRGVWPGPVRNSDHWLGGLG 730

Query: 614  DDPGIPIWIPQSKSRNNIVSD------------LIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              P              +                    +   + E  RL YV +TR    
Sbjct: 731  VLPFPLRGDADGLPELALPEAEDQRGVARALTDFTDAWRAHDEREERRLAYVAVTRPRRL 790

Query: 662  LIICKHSNTSNEKKSNQRTWY--------------DMVYDSFHNDERVKKIKLTNSINKD 707
            L+   +      K+    + +               +V               T ++ + 
Sbjct: 791  LLCSGYWWGEGTKRFRGPSVFLREVHDACLAGGDGHVVDAWTPEPAGDAVNPTTETVLRA 850

Query: 708  EWIA----------------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            EW A                       PE    E          +     +        +
Sbjct: 851  EWPADPLGTRRPALTEAAALVRRHLADPETARREAAVLATTGAADDAEVARWRREADLLL 910

Query: 752  NEPYILNPSTIDTKGKTN-----------------------LESLLSDNQTFNRGLIIHK 788
             E   L       + +                                N    RG   H 
Sbjct: 911  AERAELARQAEAVEVELPGQLSVTQLVALRRDPEALARTLRRPMPTEPNPYARRGTAFHA 970

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
             L+  F                   +L  A +           L+   +    +      
Sbjct: 971  WLEQRFGTD----------RLLDVDELPGAADEDAAPDEALAELQERFLAGEWAD--RVP 1018

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            V V          ++I GR+D +       + + ++KT                 QL++Y
Sbjct: 1019 VEVEVPFATVIAGVVIRGRMDAVFARPGGRYDVVDWKTGRQPAGREADAA---AVQLAVY 1075

Query: 908  EKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
                 +    P   +     YV +            +  A +   +P
Sbjct: 1076 RLAWAELAGVPVDRVGAAFHYVRDSATVRPADLLDAEGLAALVAAVP 1122


>gi|13358064|ref|NP_078338.1| DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762416|ref|YP_001752584.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171920094|ref|ZP_02931516.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|183508498|ref|ZP_02958027.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701747|ref|ZP_02971434.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|11267430|pir||D82883 DNA helicase II UU501 [imported] - Ureaplasma urealyticum
 gi|6899500|gb|AAF30913.1|AE002148_5 DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827993|gb|ACA33255.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902450|gb|EDT48739.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|182675926|gb|EDT87831.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701018|gb|EDU19300.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 743

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 103/615 (16%), Positives = 183/615 (29%), Gaps = 116/615 (18%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
             +   +L      Q    +K+ + ++I K    +K K     D   +   ++       
Sbjct: 113 DTDDQEVLLKEIFDQLNIEKKSQVIKKIIKTISKVKNKFFDQNDMLNEKNHKYLELVDLN 172

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                +     +   Y +   K   +DF+DLI  T+ L         +  K   + ++IL
Sbjct: 173 DAQRLV----DIYKIYCDRCFKLNYVDFDDLINLTHKLF---IEFPEVLEKWQNKFDYIL 225

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ IQ+++I  L           +  + LF VGD  Q IYSF GAE   +    
Sbjct: 226 VDEFQDTNKIQYDLISLLA----------TKHQNLFVVGDPDQMIYSFRGAEQWIINNFS 275

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +  +           +  L  ++RST  IL   +++     N    +             
Sbjct: 276 QNFKN--------TKVTILKTNYRSTQPILNTANRLIDANNNNYKKN------------- 314

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                            +    P      +  D           A  IA  I  ++   T
Sbjct: 315 -----------LTAFNTNDNNLPIYLRGQNPIDE----------ANWIARKIRELLEEGT 353

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                      A  I VL R    +  I            I           +   IKD+
Sbjct: 354 P----------ANQIAVLFRSNHYSRTIEQSM----MRESIPYTILGSKKFYERAEIKDM 399

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG--- 477
           +A  + + +  D+LSF+ ++ +P           +     +    ++E + +        
Sbjct: 400 IAYLKVV-NDLDELSFLRIINTPRRAIGPTTFEHVKHYAINNNLFLFEALAEVEKNHLIN 458

Query: 478 ---ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFL 533
                   + +  I E+    +    H+   LI          + +    + ID + E  
Sbjct: 459 NTQKKNILNFVNLIKEIRDEMEDLKIHEILELIYKKVNYEAYLLENEKAEDKIDNVYELK 518

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                           +   L      + +    +   V +MTVH +KGLE   VF+   
Sbjct: 519 RAMKMYVDRHPDD--TINDYLNSIALYLNKDGKDSKENVLLMTVHNSKGLEYENVFVAGM 576

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +           +                                   EE  R+ YV
Sbjct: 577 NEGLLPSDRAINDDPI--------------------------------KGVEEERRIAYV 604

Query: 654 GMTRASDQLIICKHS 668
            +TRA   L I    
Sbjct: 605 ALTRAKKNLYISSAC 619


>gi|222034534|emb|CAP77276.1| exodeoxyribonuclease V beta chain [Escherichia coli LF82]
 gi|312947371|gb|ADR28198.1| exonuclease V subunit beta [Escherichia coli O83:H1 str. NRG 857C]
          Length = 1180

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 129/971 (13%), Positives = 292/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      ++ S  
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S       +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARSIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQI 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          +  +    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGK----------------------- 854
            L   IT +L+ P+      +      D   E+                            
Sbjct: 990  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISELLIASQLDALIRQFDPLSAG 1049

Query: 855  ---INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
               +   +   ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|317050280|ref|YP_004111396.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
 gi|316945364|gb|ADU64840.1| UvrD/REP helicase [Desulfurispirillum indicum S5]
          Length = 643

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 102/553 (18%), Positives = 182/553 (32%), Gaps = 115/553 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           T+   +   Y++       +DF+DL++N  ++L      + +  K  Q+  +I +DE QD
Sbjct: 172 TVIAPVFREYQKLMLSFNAMDFDDLLLNLKEILYHS---SDVLQKYQQKFRYIHVDEYQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+E++  L              R LFAVGD+ QSIY F GA  + +L  ++     
Sbjct: 229 TNQVQFEILHLLAGQ----------HRNLFAVGDDDQSIYRFRGATIENILNFEQHYPNT 278

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
           A        I +L  ++RS   IL   + + S                  +       G 
Sbjct: 279 A--------IFKLEQNYRSPQSILDCANSIISRNPRRH----------PKQLFSDLGPGE 320

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               + + S  D                          A  I   I  ++          
Sbjct: 321 KIGLKVLPSADD-------------------------EASFIVGEIQQLLSDG------- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI VL R    + L       L     I       F       I+D++A    
Sbjct: 349 ---FAPSDIAVLYRTNAQSRLFE----ALLLRRGIPYRVVGSFEFWKRKEIQDVLAYVSL 401

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-----CTQRHETETVYEYIQKFANCGISKFQ 482
           I +  D  +F  ++  PL       + KI      + R   E                 +
Sbjct: 402 IANPRDIQAFERVVNYPLRGIGAASVEKIVSLAVDSGRPVLEAAALMAADLRGKARQSIE 461

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLR 538
           + ++++        +    D    I+      +   +R         ++ + E ++    
Sbjct: 462 NFLEFLASFQGGQDYL-ISDMIEEIVRKAGIDKDIRNREDEHQAQSRLENIGELISAATA 520

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E+   +    L   LE+    I+   +     V ++T+H+AKGLE PVVFL    + +F
Sbjct: 521 FEKERPAEQITLSHFLEEINLGIETRQNT-QEGVSLLTIHSAKGLEFPVVFLSGLENTLF 579

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                     +  QEE  RL+YV +TR 
Sbjct: 580 PSPMSMG----------------------------------NQFAQEEERRLMYVAVTRC 605

Query: 659 SDQLIICKHSNTS 671
            ++L + +  + +
Sbjct: 606 QEKLFLTRAQSRT 618


>gi|126664590|ref|ZP_01735574.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17]
 gi|126630916|gb|EBA01530.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17]
          Length = 721

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 106/580 (18%), Positives = 209/580 (36%), Gaps = 119/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            +   YE+  +++ ++DF +L++ +++L L + +    +     Q   HIL+DE QDT+ 
Sbjct: 173 RVYRQYEKLCQQSGLVDFGELLLRSHELWLHRPE----LLAHYQQRFQHILVDEFQDTNA 228

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  ++ L           S+   L  VGD+ QSIY + GA+ + + + +R        
Sbjct: 229 IQYAWLQVLA----------SNRVPLTVVGDDDQSIYGWRGAKVENIQQYQRDFPN---- 274

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RST  IL   + V    +   G                      +L
Sbjct: 275 ----ARLVKLEQNYRSTKLILKAANSVIDNNQGRLGK---------------------EL 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S  + F+   +       A  IA TI++ +    +        
Sbjct: 310 W-------SDGVDGEPVSLYAAFNEQDE-------ANYIADTITSWVQDGNL-------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            I           D   I++ +A  R +  
Sbjct: 348 --RAECAILYRSNAQSRVLEESL----MRQGIPYRVYGGLRFYDRQEIRNALAYLRLVHY 401

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------FQH 483
           + DD +F  ++  P        +  +      ++ +++E  Q+  + G  K       Q 
Sbjct: 402 RRDDAAFERVVNLPPRGIGAKSLADLRQYAGKQSISMWESAQRMLDAGQMKGRAKTGLQK 461

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +  I EL  +A+  + H      +     ++   S  G +    ++ L+E +N     E
Sbjct: 462 FLSIIEELSALAEHGTLHGLMQQTIDDSGLKEYHASEKGEKGQGRVENLEELVNALTTYE 521

Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +     L E I++              + + V++MT+H+AKGLE P+VF+      +F 
Sbjct: 522 VEEGIDPLSEFIAQAALDAGEA--QAEDHEDSVQLMTLHSAKGLEFPLVFMAGVEEGLFP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H    +                                       EE  RL YVG+TRA 
Sbjct: 580 HSMSLEEPG----------------------------------RMEEERRLAYVGITRAM 605

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +LII    +     +         V +   +  +  +++
Sbjct: 606 KKLIITYAESRRLYGQEKFNALSRFVREIPGDCIQEVRLR 645


>gi|15836655|ref|NP_297343.1| DNA-dependent helicase II [Xylella fastidiosa 9a5c]
 gi|9104818|gb|AAF82863.1|AE003859_4 DNA helicase II [Xylella fastidiosa 9a5c]
          Length = 728

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 103/629 (16%), Positives = 199/629 (31%), Gaps = 121/629 (19%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +S    +   + + A Y+E   +  ++DF +L++  ++LL+       +   
Sbjct: 154 RRPEHIQPESHDDWIETQRRIYAEYQERCNRAGLVDFAELLLRAHELLRDTPA---LLTH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  ILIDE QDT+ IQ+  +R L  +             + AVGD+ Q+IY + GA
Sbjct: 211 YRSRFREILIDEFQDTNAIQYAFVRILANE----------TGHVIAVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V    +               I L  ++RS+A+IL   + + +   +  G      
Sbjct: 261 KVEHVQHFLKDFPN--------VQTIRLEQNYRSSANILDAANAIIAHNPDRIGKR---- 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW             +     + ++ + +       AR I   
Sbjct: 309 -----------------LW-------TESGVGESIDLYAAYNEIDE-------ARYIVER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 +I VL R    +     + +       I          
Sbjct: 338 ACQWVRDGG----------SYGEIAVLYRSNAQSRAFEEVLQSE----HIPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F  ++ +P+    E  + ++    R +   +++   
Sbjct: 384 FERAEIKDALAYLRLLANRSDDAAFERVVNTPVRGIGERTLDEVRHLARTQGLALWDAAM 443

Query: 472 KFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                        +     +  + +L          +    +L   + R+ +        
Sbjct: 444 ACTQSTTLTARARNALASFLNLLQQLAVETSQMGLAERIDHMLLRSELREHWKKEARGSL 503

Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575
                 + LDE ++   R            + EL + L             A    V++M
Sbjct: 504 DAESRQENLDELVSVASRFVLPQNDEDTPIMTELDAFLSYTCLESGDGQVQAGEEGVQLM 563

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P+VFLV   + +F                                     
Sbjct: 564 TLHSAKGLEFPLVFLVGLENGLFPS----------------------------------A 589

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
               +    EE  RL YVG+TRA  +LI+          K N       + +   +    
Sbjct: 590 RSLDEHGRLEEERRLAYVGITRARHKLILSYAEARRIHGKDNYNIPSRFLREIPRDLLHE 649

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPL 724
            +  +  S           +    +  P+
Sbjct: 650 VRPTIQVSRQTPLGAVQRPAHDERDAAPI 678


>gi|283768593|ref|ZP_06341505.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa W1219]
 gi|283104985|gb|EFC06357.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa W1219]
          Length = 1039

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 130/859 (15%), Positives = 284/859 (33%), Gaps = 115/859 (13%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
            KN   + +NK+  +++  L+ S     + R    +  + +   + L L +     Y++ K
Sbjct: 286  KNEEMRYLNKQFTEIRNALEDSL--IEESRLIKESSYLHEIAQSLLFLCQETEFQYQQLK 343

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            +K   LDF D+ + + ++L+K +   ++  K+ Q+   I++DE QDTS +Q +++  +  
Sbjct: 344  EKVMGLDFNDMALFSLEILEKNN--GYLAKKLQQKYAEIMVDEFQDTSELQHKILTMI-- 399

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     S+ + LF VGD KQSIY F  A+P+ +    +          +K  +  L 
Sbjct: 400  ---------SNGKNLFRVGDLKQSIYGFRNAKPELMADLMK---------SKKDKVYHLE 441

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             ++RS   I+   + +F    N +               +       +    +       
Sbjct: 442  HNYRSKDHIVQFTNALFQCLMNYE---------------KSSVPYASEDIVTIGKPEQQD 486

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                  +               + A+ I   I  ++                +DI +L  
Sbjct: 487  KESSCVNLIQIN-----SKDNMLGAKWIGQEILRLLEEG----------YTFQDICILTP 531

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               D        R   ++  I    +++        ++ +++   +   +++D+    +L
Sbjct: 532  SHADKA----QLRRAFDEIHIPYAIDEKQGFFKSSVVQTIISFVHYFCGKQEDIHLFAVL 587

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
            +SP+F  S++   K      + +       +F+   +     + K +  L          
Sbjct: 588  QSPIFQISDEQFAKSRLSYQQEKP----NTRFSTYFLDIHPTIKKRLEALKTCFLQEGTL 643

Query: 502  DFFTLI-LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
             F   + L          +   ++     D      +   Q +  +  +    LE+    
Sbjct: 644  AFLQALSLENSFY-----AHLSSQQKTNFDFLFEKIV---QENIFTAYDFFHWLERSEDE 695

Query: 561  IKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                 ++     N V++ T+H +KGL+  VVFL     +    ++   + +         
Sbjct: 696  SSTESNSHLAEENLVKVETIHHSKGLQYKVVFLYKCDMK---SQNNGPVEVSGQYGIGLD 752

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
               +   S   + +   + +   +   EE+ RL YV +TRA ++L +   SN      + 
Sbjct: 753  YQEYTYYSYHSSLVKWMIQQDNHRKEGEEFLRLAYVAITRAEEKLYLVSPSNKKEGSLTR 812

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                           + +   +    + +        S +H             ++  + 
Sbjct: 813  ---------------DFILSNQDLGVLVQAALKDLPASLYHCIEVEELENVQEYKMQPDY 857

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
               ++L    K+  +     +PS    + K  L          N G  +H  L+ +   P
Sbjct: 858  PFVQELPHYSKDFSSIFKQDSPSHHGIELK-PLNFEKKKVTGQNFGSKVHTCLEKLPNRP 916

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKIN 856
                +                +       SI     +          D + E+       
Sbjct: 917  IQLDE-------------IDPQLPMATRESILFFQNSDWTQKIFQTMDIHRELP----YY 959

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
              +  I   G +D I+ +Q+   I +YKT H            +  QL  Y    +  YP
Sbjct: 960  YEENGIAYQGILDFIATNQKKAIILDYKTDHL--DTEAAFIARYQDQLCQYRTTFEKIYP 1017

Query: 917  NKSLVCLLIYVSEPKVFII 935
               +   +  +   +   +
Sbjct: 1018 --EIETWIYSLHLKRFIFV 1034


>gi|145642218|ref|ZP_01797785.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021]
 gi|145273078|gb|EDK12957.1| ATP-dependent DNA helicase rep [Haemophilus influenzae 22.4-21]
          Length = 670

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 115/643 (17%), Positives = 223/643 (34%), Gaps = 124/643 (19%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             +T ++ K+  DL+E +    +    +      + + +   A           Y    +
Sbjct: 118 KELTADVLKEDKDLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQIR 175

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  +
Sbjct: 176 AYNALDFDDLIMLPTLLFKQNEE---VRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVGE 232

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                           VGD+ QSIYS+ GA P+ ++R +    +         ++I+L  
Sbjct: 233 ----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLEQ 274

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RST  IL   + +    E+       S                               
Sbjct: 275 NYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------T 304

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             + E          +  +  I+A  IA+                 R  + KD  +L R 
Sbjct: 305 IGKGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYRG 350

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++ 
Sbjct: 351 NHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIVN 406

Query: 443 SPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHIA 495
           +P        + K+    + +  ++++ I +F              Q   ++I EL    
Sbjct: 407 TPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKAYDSLQKFGRWIVELNDEI 466

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYSS 546
           Q   P      +L      +       +          +    ++        E N   +
Sbjct: 467 QRSEPERAVRSMLSTIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPMN 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+     
Sbjct: 527 LNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI--I 664
                                             +   EE  RL YVG+TRA  +L   +
Sbjct: 586 ----------------------------------EDNVEEERRLAYVGITRAQKELTFSL 611

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           C+      E    + + +     +        K KLT    ++
Sbjct: 612 CRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 654


>gi|86137696|ref|ZP_01056272.1| DNA helicase II, putative [Roseobacter sp. MED193]
 gi|85825288|gb|EAQ45487.1| DNA helicase II, putative [Roseobacter sp. MED193]
          Length = 832

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 109/651 (16%), Positives = 200/651 (30%), Gaps = 121/651 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+    +   +DF DL+++   + +     + I  +  +   +I++DE QDT++ 
Sbjct: 234 ELYAQYQRRLLELNAVDFGDLLLHVVTIFQTH---SDILAQYQRWFRYIMVDEYQDTNIA 290

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 291 QYMWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 334

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V S      G                      +LW
Sbjct: 335 --GAKVVRLEQNYRSTEHILAAASGVISGNSGRLGK---------------------ELW 371

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   ++   ++     ++D   +       AR I   I       T      +R I
Sbjct: 372 -------TAEKGGEKVRLIGHWDGEEE-------ARWIGEEIEA-----TQRGTRGQRPI 412

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + L I+D M   R + S 
Sbjct: 413 GLNDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMGYFRMVTSA 468

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHV 484
           +DDL+F  ++ +P     +     I    R    ++ E  +           G +  + +
Sbjct: 469 DDDLAFERVVNTPKRGLGDKAQQTIQGYARENGVSLVEGARLAVEAGAIKGKGGAALRRL 528

Query: 485 IKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           +  +     +A     S  +   ++L        + +    +    ++ L E +      
Sbjct: 529 VDDLARWGRMAGDADISHMELAEIVLDESGYTGMWQADKNPDSPGRLENLKELVKALENF 588

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +      +  +V IMT+H AKGLE P VFL      +F 
Sbjct: 589 EN--------LQGFLEHVSLVMDNDKQDSDQKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 640

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 641 SQRS--------------------------------MDESGLKGLEEERRLAYVGITRAE 668

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +   I      +  ++   +    +               LT             S   P
Sbjct: 669 EVCTIS----FAGNRRVFGQWQSQLPSRFVDELPEEHVEVLTPPGLYGGGYGAAASRAEP 724

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
             + +E +       +     +      +    +        ID +   + 
Sbjct: 725 IGSTIEAKVAQADGYNSPGWKRMQARAGQRGTPQTAQARGQIIDLEATASF 775


>gi|168242761|ref|ZP_02667693.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL486]
 gi|194447882|ref|YP_002046963.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Heidelberg str. SL476]
 gi|194406186|gb|ACF66405.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL476]
 gi|205338102|gb|EDZ24866.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL486]
          Length = 1181

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 122/876 (13%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    ++       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGENCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLMNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQAAMATAMQAHRYDLQYQLYTLALHR 1120


>gi|37521963|ref|NP_925340.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
 gi|35212962|dbj|BAC90335.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
          Length = 793

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 114/733 (15%), Positives = 223/733 (30%), Gaps = 134/733 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E I +                        +P     A  +++          F 
Sbjct: 65  AAGEMKERILQLFCERTARSRGG-----EAFAALPDPERRAIAGRVRRELIQPLWVGTFH 119

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L +  L        +   +   +      E     QD+   I  +       +    S+
Sbjct: 120 ALCARMLRYDIDKYTDQRGRTWQRNFTIFDE--SDVQDQIKDIVTKQLNLDDRRYVPRSV 177

Query: 128 TLA---------------------------KYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
             A                             +   Y++   +N  LDF+DLI     LL
Sbjct: 178 RFAISGAKNQGLSPEEYQHSEGGSLRARTIAQVYERYQDQLARNNALDFDDLIWVPVQLL 237

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           ++      +     +   HIL+DE QDT+  Q+++IR L  +           R++F VG
Sbjct: 238 RR---RPDVLDYWHRRFRHILVDEYQDTNRTQYDLIRLLATNNQPKSEWDWRDRSVFVVG 294

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  Q+IYSF  A+ + ++  +        +   + ++I+L  ++RS+A IL V +++ + 
Sbjct: 295 DADQAIYSFRQADFRILMDFQSDFGDGLADDETE-TLIKLEENYRSSATILDVANELIAN 353

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                     +T               V L E      +++                   
Sbjct: 354 NIERIDKVLRATRPAGL---------PVSLHEAEDEVAEAE------------------- 385

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                   I   +  +   DT             D  VL R    +  I        + +
Sbjct: 386 -------YIVGQLRKLKDADTRP---------WNDFAVLYRVNAQSQPIEQAL----SRW 425

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            +           D   IKD+++  + I +  D ++    + +P     +  + K+    
Sbjct: 426 GVPYTVVGGLRFYDRREIKDVLSYLKAIHNPADSVALKRSMSAPRRGIGKTTLDKLEAGA 485

Query: 461 HETE-TVYE------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
              + ++++       I+  A          ++++  L  +A      +    +L     
Sbjct: 486 GMLQTSLWQLLTDETSIKNLAGRTSGPILQFVRFVERLQELAARVRVSELLDTVLKESGY 545

Query: 514 RQQFISRFGNEVI---DVLDEFLNFTLRNEQN----SYSSLQELISELEQYPPTIKRAHS 566
            Q        E     + + E  +   R E+       ++L+  ++ +            
Sbjct: 546 VQMLQEEGTEEAEGRLENVLELRSVVQRFEEESEDPENATLEAFLANVSLASDLDN--LE 603

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A    + +MT+H AKGLE PVVFL      +F H                          
Sbjct: 604 AGAERISLMTLHAAKGLEFPVVFLGGLEDGLFPHFR------------------------ 639

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                    I+    +  EE  RL YVG+TRA ++L +                    + 
Sbjct: 640 --------AIQDGDSAAIEEERRLCYVGITRAKERLFLSYAQARRLYGDRQPAIPSQFLK 691

Query: 687 DSFHNDERVKKIK 699
           +         +++
Sbjct: 692 ELPAEKLAGTRVR 704


>gi|89055268|ref|YP_510719.1| ATP-dependent DNA helicase Rep [Jannaschia sp. CCS1]
 gi|88864817|gb|ABD55694.1| ATP-dependent DNA helicase, Rep family [Jannaschia sp. CCS1]
          Length = 817

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 112/690 (16%), Positives = 200/690 (28%), Gaps = 149/690 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+   K     DF DL+++   + +  D    +  +  +   +IL+DE QDT++ Q
Sbjct: 199 LYAQYQARLKALNACDFGDLLLHVIQIFQDNDD---LLQQYQRWFRYILVDEYQDTNVAQ 255

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R L              + +  VGD+ QSIY + GAE   +LR ++          
Sbjct: 256 YLWLRLLAA----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------- 298

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RST  IL     V +      G +                     LW 
Sbjct: 299 -GAHVVRLEQNYRSTGHILAAASGVIAGNTGRLGKT---------------------LW- 335

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + ++     ++D   +       AR I   I  M              I 
Sbjct: 336 ------TDGEDGEKVRLIGHWDGDEE-------ARWIGEEIEAM-----GKGTRGMEPIG 377

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I +LVR                    +           + + I+D MA  R ++S +
Sbjct: 378 PNSIAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRVVVSPD 433

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVI 485
           DDL+F  ++ +P     +     I            E   +    Q     G  + + ++
Sbjct: 434 DDLAFERIVNTPKRGLGDKAQQTIQRMARSNGVSLLEGARLCVETQAIGGKGGRELRTLV 493

Query: 486 KYIHELI-----------------------HIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +                                 S  +   +IL        + +   
Sbjct: 494 DGLARWRIQLTGALRAAGPSDDLIEEDADPSEVPKISHIELAEIILDESGYTSHWQNDKT 553

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            E    ++ L E +      E         L   LE     +         +V +MT+H 
Sbjct: 554 PEGPGRLENLKELVKALENFEN--------LQGFLEHVSLIMDNEQDDQEPKVTLMTLHA 605

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P VFL      +F  +                                  +   
Sbjct: 606 AKGLEFPAVFLPGWEDGLFPSQRS--------------------------------MDES 633

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            ++  EE  RL YVG+TRA +   I    N     +     W   +   F ++     ++
Sbjct: 634 GQAGLEEERRLAYVGITRAEEVCTISFAGN-----RRVYGQWQSQMPSRFIDELPEDHVE 688

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
           +              +T  P    +      ++           +  ++    +     P
Sbjct: 689 VLTPPGLYGHQGSVSATASPVEREMAGSNLHEKAASADVYNSPGWRRLQARQGQYGTRQP 748

Query: 760 STIDTKGKTNLESLLSDNQTFNRG-LIIHK 788
           S                   F  G  + H+
Sbjct: 749 SEAKAMTI-----DAEAISAFTVGDRVFHQ 773


>gi|325293426|ref|YP_004279290.1| DNA helicase II [Agrobacterium sp. H13-3]
 gi|325061279|gb|ADY64970.1| DNA helicase II [Agrobacterium sp. H13-3]
          Length = 824

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 179/551 (32%), Gaps = 114/551 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+   K     DF DL+++   + ++      I  +  Q+  +IL+DE QDT+ 
Sbjct: 220 RELYTAYQNRLKTLNACDFGDLLLHPISIFRRNPD---ILKEYHQKFRYILVDEYQDTNT 276

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +           P+ +  VGD+ QSIY + GAE   +LR  +        
Sbjct: 277 AQYMWLRLLAQRP------KGEPQNVCCVGDDDQSIYGWRGAEVDNILRFDKDFP----- 325

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL     + +  E   G +  +  +                
Sbjct: 326 ---GAKVIKLERNYRSTEHILGTAGHLIAHNEGRLGKTLFTERSSP-------------- 368

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                       + ++    + +DS  +       AR +   I  +   +          
Sbjct: 369 ------------DDEKVVVHAAWDSEEE-------ARAVGEEIEQLQRKNH--------- 400

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +  D+ +LVR              L     ++          + L I+D MA  R +  
Sbjct: 401 -KLNDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVCQ 455

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++ +P     +  I  +    R     +           +           
Sbjct: 456 PADDLAFERIVNTPKRGLGDTTIRNLHDYARARDIPMLAAATDIIETDELKPKARKALFD 515

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
           V++       + +          IL        + +    E    ++ L E +      E
Sbjct: 516 VVQDFRRWQGLLENTEHTTLAEQILDESGYTAMWQADKTAEAPGRLENLKELIRSMEAFE 575

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L   LE     +    + N + V IMT+H+AKGLE   VFL      +F H
Sbjct: 576 S--------LRGFLEHVALVMDAEQNENLDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPH 627

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                  +    +S  EE  RL YVG+TRA  
Sbjct: 628 QR--------------------------------ALDEGGRSGLEEERRLAYVGITRAKK 655

Query: 661 QLIICKHSNTS 671
              I   SN  
Sbjct: 656 LCHIWFVSNRR 666


>gi|120556547|ref|YP_960898.1| DNA-dependent helicase II [Marinobacter aquaeolei VT8]
 gi|120326396|gb|ABM20711.1| ATP-dependent DNA helicase UvrD [Marinobacter aquaeolei VT8]
          Length = 726

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 102/579 (17%), Positives = 201/579 (34%), Gaps = 119/579 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           +   YE+  ++  ++DF +L++ +++L L + +    +     Q   HIL+DE QDT+ I
Sbjct: 179 IYRQYEKLCQQGGLVDFGELLLRSHELWLHRPE----LLSHYQQRFQHILVDEFQDTNTI 234

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L           S+   L  VGD+ QSIY + GA+ + + + +R         
Sbjct: 235 QYAWLQVLA----------SNRVPLTVVGDDDQSIYGWRGAKIENIQQYQRDFPNS---- 280

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL   + V +  +   G                      +LW
Sbjct: 281 ----RLVRLEQNYRSTKTILKAANSVIANNQGRLGK---------------------ELW 315

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S  + F+   +       A  IA +IS  +    +         
Sbjct: 316 -------TDGVEGEPISLYAAFNEQDE-------ANYIADSISAWVSEGNL--------- 352

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  +L R    + ++            I           D   I++ +A  R +   
Sbjct: 353 -RSECAILYRSNAQSRVLEEAL----MRQGIPYRVYGGLRFYDRQEIRNALAYLRLVHYH 407

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQHV 484
            DD +F  ++  P        + +I      +  +++E  ++    G  K       Q  
Sbjct: 408 RDDAAFERVVNIPTRGIGAKSLQEIREYATGQGISLWESSERLLAAGQVKGRAKTGLQQF 467

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNFTLRNE- 540
           ++ I+ L  +A   S        + +              G   ++ L+E ++     + 
Sbjct: 468 MEIINTLSEMAGHASLQGLMKQAIESSGLKDYHASEKGEKGQARVENLEELVSALADYDV 527

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +     L E I++             A+ + V++MT+H+AKGLE P+VFL      +F H
Sbjct: 528 EEGVDPLAEFIAQAALDAGES--QADAHEDSVQLMTLHSAKGLEFPMVFLAGVEEGLFPH 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               +                                       EE  RL YVG+TRA  
Sbjct: 586 SMSLEEPG----------------------------------RMEEERRLAYVGITRAMK 611

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +L++    +     +         V +   +  +  +++
Sbjct: 612 KLVLTYAESRRLYGQEKFHALSRFVREIPGDCLQEVRLR 650


>gi|260911842|ref|ZP_05918409.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
            F0295]
 gi|260634053|gb|EEX52176.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
            F0295]
          Length = 1074

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 141/946 (14%), Positives = 292/946 (30%), Gaps = 104/946 (10%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
               G    +    I +    L       ++ +                    +    Q  
Sbjct: 219  RALGKEAEQKLIGIGERFDELLEENQLSVDDF--------GYKDKGVCGYFIKLKNGQVE 270

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            +++   L+   L     P   +  +E N     L        D                 
Sbjct: 271  DDKL--LTKRVLDALEDPNAWVGKKEQNGDGHALTVVRNVLFDYLNDSEKLRKEQAKHLK 328

Query: 123  TLAS-------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYK 172
            +          L L   +     E   ++       L+ +T  LL        + +I  K
Sbjct: 329  SAKLTLRHLDQLRLLDKIETQVRELNDQSNRF----LLSDTQTLLHALIHDSDTPFIFEK 384

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            I  ++ HI+IDE QDTS +QW   + L ++      + S       VGD KQSIY +   
Sbjct: 385  IGTQLEHIMIDEFQDTSTVQWANFKVLLQECMSHSQSQS-----LIVGDVKQSIYRWRSG 439

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            + + +   ++        +   F I  +  ++RS  +I+   +  F      +    +  
Sbjct: 440  DWRLLNEIEKQF----AGSPHAFKIERMTTNYRSERNIVDFNNAFFEAACAIEQRELEVK 495

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
            + +  +  ++      QL     +                   L +E     +  ++  T
Sbjct: 496  SPMGAQQMQVAYQDVKQLVPTDKTPR----------GRVEVCLLNKEDCEQRMMAKVCDT 545

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            I N++              +AKDI +LVR      LI         +  + +V ++ F L
Sbjct: 546  IKNLLEQG----------AKAKDIAILVRNNNSIALIADYMMVHLPE--VRLVSDEGFKL 593

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
               +A++ +MA  R + +  D L    +  +   +   + I      + + +  +   ++
Sbjct: 594  QASVAVQIIMAALRVLANPADRLLQANLATTYQTHILGNAIGDREMLKRDVDVAHFLPER 653

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            F N                          +    +       Q F     +E    +  F
Sbjct: 654  FWNNH---------------QQLMAMPIFNIVEEV------YQAFQLERLSEQSAYICTF 692

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +   +   ++ + L  +I ELE              N VR++T+H +KGLE     +  
Sbjct: 693  YDRLNKFLVDNSADLSAVIDELENDMKDRAIQSDE-LNGVRLLTIHKSKGLEFAHTIVPF 751

Query: 593  TGSQV-FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               Q+  +   +         N  P IP+ +   +   ++      H       +   LL
Sbjct: 752  CDWQLERTGGTLWCQPDEAPYNALPLIPVDLYPKQLMGSVFEKDYLHEHLQNMVDNMNLL 811

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YV  TRA   L +    + S  + +      + +            +   +++       
Sbjct: 812  YVAFTRAGRNLFVMGEKDKSGSRSAVIGQCLEQL----------TGVLQGSTLETTAEED 861

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
             E++         E +           IP      +K   ++   L  S   ++     +
Sbjct: 862  LEFNYGTLSIDTAEEKAKSTSDNVFNTIPSPFTFDVKVYESKAQFL-QSNKSSEFIGGED 920

Query: 772  SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
                 N     G ++H +   I TL      N +                  L+  + + 
Sbjct: 921  EDSQQNNYIKLGSVLHAVFAQIRTL--ADVPNVLRQLEQDGVIYDSDLTKDKLVEMLNKR 978

Query: 832  LENPMMTTAMSCDSY--SEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
              +  +    S      +E S+      P  + +++ R D++  + + + + ++K     
Sbjct: 979  FADKRVKEWFSDGWQLFNECSILSI--DPVTNAVVTHRPDRVITNGEEMRVIDFKFGKP- 1035

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                      H AQ++ Y  +L+     K +   L YV   K+  +
Sbjct: 1036 -------KEEHHAQVASYMALLEMM-GYKRVSGYLWYVYSNKIEEV 1073


>gi|167563007|ref|ZP_02355923.1| DNA helicase II [Burkholderia oklahomensis EO147]
          Length = 786

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 107/747 (14%), Positives = 220/747 (29%), Gaps = 159/747 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHHRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T +       L   Y++  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPDKVDATDSFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFENEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++ T           +   ++ VL R    +  I            I          
Sbjct: 334 IRSLVNTG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIPYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPSDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        I ++       S  +    ++ A    + +   R G + ++ L 
Sbjct: 440 YVTGKAGTSLGAFANLIAKMRAETAQMSLPETVEHVVRASGLAEFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGDADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              ++    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------AVESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +    +     ++          +   +  +    K+                      P
Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFARP 705

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKND 750
               +++        +P       + +
Sbjct: 706 GGARDSVVDAAVSAPLPAFANQQREAE 732


>gi|300820608|ref|ZP_07100759.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 119-7]
 gi|300526872|gb|EFK47941.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 119-7]
          Length = 1180

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  ++     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIEQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVWDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|295097369|emb|CBK86459.1| exodeoxyribonuclease V, beta subunit [Enterobacter cloacae subsp.
            cloacae NCTC 9394]
          Length = 1180

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 124/876 (14%), Positives = 271/876 (30%), Gaps = 133/876 (15%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 D      +  + L        +       K++   L F+D++   ++ L   +  
Sbjct: 309  LFVAIDALLAEPLTLNDLMITRAMTEIRQAVAREKRRRGELGFDDMLSRLDEALS-SENG 367

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I       +IDE QDT   Q+ + R +                L  +GD KQ+I
Sbjct: 368  EALASAIRTHFPVAMIDEFQDTDPQQYRIFRRIWR--------QQPDTALLLIGDPKQAI 419

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    ++ +       T          L  ++RS   ++  V+ +FS  E A  
Sbjct: 420  YAFRGADIFTYMKARSEVVAHYT----------LDTNWRSAPGMVESVNALFSRMETAFM 469

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
             +E     ++           V           S   P    W    +        + +A
Sbjct: 470  FNEIPFLPVKSAPKNASLRFEV----------SSAVQPAMTFWLLEGEGYGVADYQAAMA 519

Query: 347  RRIAYTISNMIGTDTIFSNGKKR-----VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            +  A  I + +           +      ++A DI VLVR R++  LI      L     
Sbjct: 520  QHCAAQIRDWLSAGARGEALLWKGEQANPVKASDITVLVRSRQEAALIRDALTLLDIP-- 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  + D L  ++++ L + +L+ E + +    L S +   +  DI ++     
Sbjct: 578  -SVYLSNRDSVFDTLEAQEMLWLLQAVLAPERENTLRSALASSMLGLNARDIDELNH--- 633

Query: 462  ETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
              E  ++ + +       ++Q   V+  + EL+              +L +  G ++   
Sbjct: 634  -DENAWDTVVEEFVHYRERWQKRGVMAMLRELMTRR------QIAENMLASSGGERRLTD 686

Query: 520  RFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                     + E L      L +E      L + I++      + +    ++ + V+I+T
Sbjct: 687  IL------HISELLQEAGTQLESEHALVRWLAQQIADPNSNASSQQMRLESDKHLVQIVT 740

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P+V+L    +     +                       +    +     +
Sbjct: 741  IHKSKGLEYPLVWLPFIANYRVQDQAYYHDRETFD-------------AVLDLSKAETSV 787

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            +  +     E  RLLYV +TR+     +          +    + + +            
Sbjct: 788  ELAEAERLAEDLRLLYVALTRSVWHCSLGVAPVFRRRGEKTGESDFHLSALGRLIQRGEP 847

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF------------ 744
            K      +  +     + + H P      R E  ++   +    +               
Sbjct: 848  KDAAGLRLCIESLCGDDIALHIPSLPDNSRWEMAQEPATDLNARQITRVLADDWRVTSYS 907

Query: 745  ------SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
                    I  D+     ++ + +         +     +  + G  +H L + +    +
Sbjct: 908  GLQQHGQSIAQDLMPKLDVDAAGVGDVPVEPTLTPHQFPRGASPGTFLHSLFEEL-DFTQ 966

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVS 852
               + ++       +  + A     L   I  +L+ P+      +    + +   E+   
Sbjct: 967  PVSEEWVLKML--QSGGYDAHWQPVLTDWINAILQAPLTTQGFSLRQLTARNKQVEMEFY 1024

Query: 853  GKINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKTH 886
              +  P K                            ++ G ID +   +   ++ +YK++
Sbjct: 1025 LPVAGPLKADALDALIRQYDPLSAGCPPLNFRQVQGMLKGFIDLVFRHEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGENSEAYTQQAMAAAMQMHRYDLQYQLYTLALHR 1120


>gi|94677005|ref|YP_588596.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220155|gb|ABF14314.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 646

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/482 (18%), Positives = 173/482 (35%), Gaps = 81/482 (16%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + + A Y+EA +++ ++DF +LI+ T ++L+     A I     +   HIL+DE QDT+ 
Sbjct: 171 QRIYAVYQEACERSGLVDFAELILRTYEMLRN---KATIANYYRERFYHILVDEFQDTNH 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L           +    +  VGD+ QSIY + GA+   +    +   +    
Sbjct: 228 IQYSWIRLLA----------NCKGYITIVGDDDQSIYGWRGAKVNNMQSFIQDFPQ---- 273

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST +IL   + + +  +N    +                     L
Sbjct: 274 ----VKTISLDQNYRSTKNILKAANYLIANNKNRLIKN---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W        +    +  S     + + +       A  +   I                 
Sbjct: 309 W-------TNSDKGEYISLYCAMNEIDE-------AYFVVNKIILNHKNG---------- 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +  KD ++L R    + ++  +   L+    I           +   +KD +A  R I +
Sbjct: 345 LALKDCVILYRNNAQSRVLEEVLLHLR----IPYHIYGGIQFFERKEVKDALAYLRIINN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQH 483
           + DD ++  ++ +P        I  +    ++   T+++         + K       Q 
Sbjct: 401 RNDDAAYDRIINTPPRGIGTKTIEIVRKMAQNRQLTLWQASIVLLQEKVLKYSSNLALQE 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNE 540
            IK I  +              L++        +       G   I  L+E +N T +  
Sbjct: 461 FIKLIENIAQNIANLPLEIQTNLVIKQSGLWNMYQQEQGEKGQSRIKNLEELVNATEKYN 520

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +    +  L + L           +  N + V++MT+H AKGLE   VF+V     +F 
Sbjct: 521 NHYNKDMVPLQAFLSNIALNTSDEFTNHNKDTVQLMTLHAAKGLEFQQVFIVGLEEGIFP 580

Query: 600 HK 601
            +
Sbjct: 581 SQ 582


>gi|161615928|ref|YP_001589893.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
 gi|161365292|gb|ABX69060.1| hypothetical protein SPAB_03725 [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
          Length = 1181

 Score =  274 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 122/876 (13%), Positives = 269/876 (30%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + +   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESVALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARALQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVS 852
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 853  GKINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKTH 886
              I  P                              ++ G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPITAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|320334525|ref|YP_004171236.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211]
 gi|319755814|gb|ADV67571.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211]
          Length = 768

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 111/612 (18%), Positives = 192/612 (31%), Gaps = 116/612 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  +   YE  K+    +DF DLI  T  L K+      +  ++      I +DE QD
Sbjct: 198 DAASEVYTRYEARKRAQNAIDFGDLITETVRLFKE---VPGVLERVQDRALFIHVDEYQD 254

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+ R L           S  R L  VGD  QSIY F GA+ + +L  ++     
Sbjct: 255 TNKAQYELTRLLA----------SRDRNLLVVGDPDQSIYRFRGADIQNILDFQKDYP-- 302

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +  L  ++RS+A +L + +K+                              
Sbjct: 303 ------DAKVYRLEHNYRSSARVLNLANKLIENNTERLEKVLRPVK-------------- 342

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                          + +   +    D   +          +A  I          +   
Sbjct: 343 --------------DSGEPVLFHRANDHRGEGD-------FVAEQI----------TLHH 371

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            R I+  D+ +L R    + +I    R       I           D   I+D+++  R 
Sbjct: 372 HRGIKFSDMAILYRTNAQSRVIEESLR----RVNIPAKIVGGVGFYDRREIRDILSYARL 427

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----H 483
            ++  DD++   ++  P     +  + K+    +  +         A   + +       
Sbjct: 428 SINPADDVALRRIIGRPRRGIGDTALAKLIEWANINKVPILVACHNAEQILERGANKAVE 487

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               +       +  SP  F   ++          +   NE    I+ L+E +N      
Sbjct: 488 FANLMDAFSEAVEAYSPGAFLRYLIETSGYLDMLKAENNNEGQARIENLEELVNAAEEWA 547

Query: 541 QNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           Q+   ++ + + +                  A  + V +MT+H AKGLE PVVF+V T  
Sbjct: 548 QDHEGTIADFLDDAALLSSVDDMRTKTENKDAPEDAVTLMTLHNAKGLEFPVVFIVGTEE 607

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +   K+                                          EE  RL YVG+
Sbjct: 608 GLLPSKNALIEPGG----------------------------------VEEERRLFYVGI 633

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA D+L +    N     K+N       + +     E V +        +  W  Y  +
Sbjct: 634 TRAMDRLYLTAAQNRMQYGKTNSTEDSRFLEELGQGFESVDQYGQVVEYTQKTWRDYRPT 693

Query: 716 THHPENTPLERE 727
                NTP    
Sbjct: 694 ATRHMNTPTPTA 705


>gi|325205799|gb|ADZ01252.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M04-240196]
          Length = 671

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 204/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R+K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRHKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + + +++  R       ++ EL   +       
Sbjct: 478 SLLEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|197250871|ref|YP_002147902.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Agona str. SL483]
 gi|197214574|gb|ACH51971.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Agona str. SL483]
          Length = 1181

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 121/876 (13%), Positives = 271/876 (30%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL------------------------ 831
                  +           +          L ++  +                        
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 832  --LENPMMTTAMSCDSYSEVSVSG---KINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
              +  P++   +         +S     ++  +   ++ G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLIAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|194434344|ref|ZP_03066608.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 1012]
 gi|194417407|gb|EDX33512.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 1012]
 gi|332088590|gb|EGI93703.1| exodeoxyribonuclease V, beta subunit [Shigella dysenteriae 155-74]
          Length = 1180

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------YHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFIFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDSLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|238909771|ref|ZP_04653608.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Tennessee str. CDC07-0191]
          Length = 1181

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 122/876 (13%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + +   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESVALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|170782918|ref|YP_001711252.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157488|emb|CAQ02679.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 815

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 119/768 (15%), Positives = 223/768 (29%), Gaps = 134/768 (17%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF-LTQ 76
           ++ WP     ++  NK  +   E     + + ++ +  ++            +  F  TQ
Sbjct: 78  REAWPSQILAITFTNKAAAEMRERVESLLGQASEGMWISTFHSACVRILRREAEAFGFTQ 137

Query: 77  KFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            FT   +  ++ + K+     +       +        K+++  +    F  T      A
Sbjct: 138 NFTIYDSADSRVLIKRIIKQLDADTLGFTVSSVSGRISKLKNELSDADTFARTANFNDPA 197

Query: 131 KY----LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           +     +   Y  +       DF+DLI  T  L +       +     +   H+L+DE Q
Sbjct: 198 EAMFVEIFRQYTRSLAAANAFDFDDLIGQTVYLFR---AFPKVAALYQRRFRHVLVDEYQ 254

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSS-----------PRTLFAVGDEKQSIYSFHGAEPK 235
           DT+  Q+ +IR LT           +             +L  VGD  QSIY+F GA+ +
Sbjct: 255 DTNHAQYSLIRELTRAVAPEDVPVDTRMSTNGMGGIDGASLTVVGDSDQSIYAFRGADIR 314

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +   +R   +          ++ L  ++RST +ILT  + V S   + +          
Sbjct: 315 NITEFERDFPQS--------KVVLLEQNYRSTQNILTAANAVISNNFDRKDKK------- 359

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                         LW  +                          S    A+ +A  I  
Sbjct: 360 --------------LWTSIGDGDKIVGF--------------TGYSGHDEAQFVADEIQK 391

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           +    T             +I V  R    T  +  +         +           + 
Sbjct: 392 LHEEGTA----------YSEIAVFYRTNAQTRALEEIL----IRSAVPYRIMGGTKFYER 437

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA 474
             IKD MA    + +  D L+   +L +P           +         T  E +++ +
Sbjct: 438 AEIKDAMAYLVAVANPADVLALRRILNTPKRGIGPATETALANFAESHGVTFREAMRRAS 497

Query: 475 N-CGISKFQHVIKYIHELIHIA----------QFCSPHDFFTLILGAKKGRQQFISRFGN 523
                 K    I  +  ++                S  D  T +L      Q   +    
Sbjct: 498 ELGLGPKVTQAILTLSRMLDEVALLLDPERPEGRTSVSDLVTTLLKRSGLVQALRASKDA 557

Query: 524 E---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           +     + ++E +  T    +N+    L + ++E+             ++  V +MT+HT
Sbjct: 558 QDEARAENVEELVAVTKEFSRNNPEGQLVDFLTEVSLVAAAD--ELDDSNGTVSLMTLHT 615

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFL      +  H+        P                             
Sbjct: 616 AKGLEYDSVFLTGVEEDLLPHRMSANEPGGP----------------------------- 646

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                 E  RL YVG+TRA  +L I      +   + N       + +        K+  
Sbjct: 647 -----AEERRLFYVGITRARRRLFISLAMTRAQFGEVNVAMPSRYLQEIPAELIDWKQSP 701

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
              +           +             +          P+      
Sbjct: 702 GMATSRGGTQPRALNARREGGGYGGRSRSSSGFEDPALPPPRPKTQWA 749


>gi|167762854|ref|ZP_02434981.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC
           43183]
 gi|167699194|gb|EDS15773.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC
           43183]
          Length = 781

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 92/610 (15%), Positives = 185/610 (30%), Gaps = 121/610 (19%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
           + A +   + +   Y E  ++   +DF+DL+  T  L +       +  +   +  +IL+
Sbjct: 168 SAAKMPAIRDIYRRYWERCRQADAMDFDDLLFYTFLLFRD---RPEVLARYRSQFRYILV 224

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q  ++  L ++           + +  VGD+ QSIYSF GA+   +L   +
Sbjct: 225 DEYQDTNFAQHSIVLQLAKE----------HQHVCVVGDDAQSIYSFRGADIDNILYFTK 274

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           +             + +L  ++RST  I++  + +    +        S           
Sbjct: 275 VYP--------GTKVFKLEQNYRSTQTIVSAANSLIEKNQRQIRKEVFS----------- 315

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                           +         + +Y D    +         +   I+ +   +  
Sbjct: 316 ----------------EKDKGEPIGVYQAYSDVEEGDI--------VINKIAELRRQE-- 349

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                       D  +L R    + +     R       +               IKD++
Sbjct: 350 -------NYVYSDFAILYRTNAQSRVFEEAMR----KRSMPYRIYGGLSFYQRKEIKDVI 398

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FA 474
           A  R  ++  D+ +F  ++  P     +  + KI         +++  + +         
Sbjct: 399 AYFRLTVNPNDEEAFKRIINYPARGIGDTTVNKITAAATSHNVSLWTVLCEPLTYGVNIN 458

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
                K Q     I   I      + ++  T I+               E     + ++E
Sbjct: 459 KGTAGKLQDFRCLIAGFIESVAEKNAYELGTEIIRQSGIIADVCQDNSPENLSRKENIEE 518

Query: 532 FLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             N           E N+ ++L + +SE+             +  ++ +MTVH+AKGLE 
Sbjct: 519 LANGMSDFCAQRLEEGNANTTLSDFLSEVSLL-TDQDSDKDGDDEKITLMTVHSAKGLEF 577

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+V     +F                                              E
Sbjct: 578 KNVFVVGMEENLFPSGMAGDSP----------------------------------RALE 603

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YV +TRA D   +    +     K         + D      ++ +        
Sbjct: 604 EERRLFYVAITRAEDHCFLTYAKSRYRYGKMEFGNPSRFLKDIDVRFLKLPQDAGLVRKV 663

Query: 706 KDEWIAYEWS 715
            +   ++   
Sbjct: 664 DEYAASFRRE 673


>gi|94497982|ref|ZP_01304546.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
 gi|94422565|gb|EAT07602.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
          Length = 758

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 126/765 (16%), Positives = 228/765 (29%), Gaps = 138/765 (18%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
           +  WP     V+  NK            I    + +     T        L     L   
Sbjct: 57  RRAWPSEILAVTFTNKAAREMRARVGAMIGDAVEGM-PWLGTFHAIAARMLRRHAELVGL 115

Query: 78  FTPQKNIITQEINKKSPDLK-----EKLKKSQDEFIKIRDRFN-------TYKMFKSTLA 125
            +    + T +  +    L      ++ +    +   + D++             ++   
Sbjct: 116 QSNFTILDTDDQLRLMKQLIQAEGIDEKRWPARQLGGLIDQWKNKGLTPDEVSAGEAEGY 175

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           +    + L A Y+   +     DF DL+++   +LK       +  +  Q+  +I++DE 
Sbjct: 176 AHGKGQKLYAAYQARLRDVNACDFGDLLLHVLTILKMH---RDVLEQYQQKFRYIMVDEY 232

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+  +R L ++           + +  VGD+ QSIYS+ GAE   +LR ++   
Sbjct: 233 QDTNSSQYLWLRLLAQE----------RKNICCVGDDDQSIYSWRGAEVANILRFEKDFP 282

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                     +II L  ++RST  IL     V +   N  G +                 
Sbjct: 283 --------GATIIRLEQNYRSTPHILGAASGVIAENGNRLGKT----------------- 317

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW  +      +       W    +           ARRI+  I  +  +      
Sbjct: 318 ----LWTDIDV---GEKVKVIGVWDGPEE-----------ARRISEDIEAIERSGGSLD- 358

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D+ +LVR +  T               +       F   +   I+D +A  
Sbjct: 359 ---------DVAILVRAQHQTREFEDRF----IQIGLPYRIIGGFRFYERAEIRDALAYL 405

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGI 478
           R +    DDL+F  ++  P     +  + K+    R +   +           +      
Sbjct: 406 RLVNQPADDLAFERIVNVPKRGLGDKAVEKLHRLARAQGIPLTLAAARILDTDELTPQAR 465

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 I  +      A      +    IL          +    E    ++ L E    
Sbjct: 466 RSLGAFIGDLARWRDRAGQLPHAELARQILDESGYTAMLQADRTTESAGRLENLTELTRA 525

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +         L + LE     +     A   +V IMT+H AKGLE   VFL     
Sbjct: 526 MEEYDT--------LGAFLEHVSLVMDNEAQAEERKVTIMTIHAAKGLEFEHVFLAGWEE 577

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F  +       + S                                 EE  RL YV +
Sbjct: 578 GLFPSQRALDEGGLNS--------------------------------LEEERRLAYVAI 605

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA  +  I   +N     +     W   +   F  +   + ++  +S++    +     
Sbjct: 606 TRARRRCTILHAAN-----RRIYGQWTSSIPSRFVGELPPEHVEEESSMSGGASLWRANW 660

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
           +   +        T +    ++      FS     I E      S
Sbjct: 661 SEREDPFANVARGTGRGPGWQRAQSSGQFSAEPVRIVEARSSAVS 705


>gi|187733096|ref|YP_001881439.1| exonuclease V subunit beta [Shigella boydii CDC 3083-94]
 gi|187430088|gb|ACD09362.1| exodeoxyribonuclease V, beta subunit [Shigella boydii CDC 3083-94]
          Length = 1180

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 131/971 (13%), Positives = 295/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      ++ S  
Sbjct: 215  DETLASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N     +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPKSVDLAEVERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          + ++    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPM 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      ++     D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNEKGVSLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQE---------IEHIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSVYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|161870316|ref|YP_001599486.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442]
 gi|161595869|gb|ABX73529.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442]
          Length = 690

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 146 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 205

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 206 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 252

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 253 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 304

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW ++      +             
Sbjct: 305 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 332

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 333 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 380

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 381 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 436

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 437 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 496

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + + +++  R       ++ EL   +       
Sbjct: 497 SLLEEIDYENHLMQNEEGKAGEIKWRNVSDLVSWFARKGGEDGKNIIELAQTVALMTLLE 556

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 557 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 595

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 596 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 640

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 641 SRFIDEMPQED 651


>gi|16766296|ref|NP_461911.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Typhimurium str. LT2]
 gi|167993491|ref|ZP_02574585.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|16421543|gb|AAL21870.1| exonuclease V, beta chain [Salmonella enterica subsp. enterica
            serovar Typhimurium str. LT2]
 gi|205328446|gb|EDZ15210.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248128|emb|CBG25963.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
            Typhimurium str. D23580]
 gi|267995133|gb|ACY90018.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 14028S]
 gi|301159552|emb|CBW19071.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
            Typhimurium str. SL1344]
 gi|312914013|dbj|BAJ37987.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Typhimurium str. T000240]
 gi|323131350|gb|ADX18780.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 4/74]
          Length = 1181

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARALQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|261416924|ref|YP_003250607.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373380|gb|ACX76125.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326770|gb|ADL25971.1| ATP-dependent DNA helicase PcrA [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 843

 Score =  274 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 93/550 (16%), Positives = 187/550 (34%), Gaps = 108/550 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
               A Y++   ++  +DF+DL+ NT  +L+   +   +  ++ +   ++++DE QDT+ 
Sbjct: 200 ARYYAAYQKKLAESNAMDFDDLLFNTVRMLQ---MVPNLAEQLRERFQYVVVDEYQDTND 256

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+E+++ L          +   + +  VGD+ QSIY + GA  K +    R        
Sbjct: 257 VQYELLKLLI---------NRDTKNVTVVGDDDQSIYGWRGANIKIIRNFHRDF------ 301

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +I++L  ++RSTA+I+     V +                            V+ 
Sbjct: 302 --APVTIVKLERNYRSTANIVKGAGSVIAHN--------------------------VRP 333

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            E   +    +   +      + D   +       A  IA T++                
Sbjct: 334 AEMQKNVFSKEEAGELIHVRYFEDDRAE-------ASNIAKTVAQ------------AGP 374

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +  R    + ++      L+    I  V        D   IKD++A  R + +
Sbjct: 375 DFYAKTAIFYRTNAQSRVLEKALNDLR----IPSVIFGGTRFWDRKEIKDVLAYLRVLAN 430

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYE---YIQKFANCGISKFQHVIK 486
           ++DD +++ ++ +P     +  +  +  +    E + ++           G  K +    
Sbjct: 431 EKDDAAYLRVINTPPRAIGKTTVEGVLAKVKAGEGSFWDNLLAEANGTGRGAPKLKVFTD 490

Query: 487 YIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQ 541
            +    ++  +           I+     +           +E I  LDE +N     ++
Sbjct: 491 LVTNWKNMMTSGEYPLPILAEHIINDTGYKDFLRKEDEVTADERIANLDEMINAIREFDE 550

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               ++L   + ++       K+    +   V +MT+H AKGLE   V L     ++F  
Sbjct: 551 EHPGATLDAFLQDISLLTDGDKK-VDTSKGLVTLMTIHMAKGLEFNTVHLAGCDDEIFPL 609

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                M  M                                   EE  RL YVG TRA  
Sbjct: 610 VRGTSMLSM----------------------------AEINEQMEEERRLFYVGCTRAEK 641

Query: 661 QLIICKHSNT 670
           +L +      
Sbjct: 642 KLYLYHAERR 651


>gi|331648580|ref|ZP_08349668.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M605]
 gi|331042327|gb|EGI14469.1| exodeoxyribonuclease V, beta subunit [Escherichia coli M605]
          Length = 1183

 Score =  274 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 132/971 (13%), Positives = 295/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 218  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 275

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 276  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 334

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 335  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 393

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 394  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 445

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 446  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 489

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 490  ----LRFVFKGEMQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 545

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 546  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 602

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 603  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 654

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 655  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 708

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 709  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 768

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 769  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 815

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 816  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 875

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 876  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 935

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          + ++    
Sbjct: 936  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 992

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      +      D   E+     I+ P                   
Sbjct: 993  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1052

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1053 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1112

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1113 QYQLYTLALHR 1123


>gi|289422630|ref|ZP_06424472.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius
            653-L]
 gi|289156981|gb|EFD05604.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius
            653-L]
          Length = 1375

 Score =  274 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 120/708 (16%), Positives = 226/708 (31%), Gaps = 88/708 (12%)

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK---------MFKSTLASLTLAKYLNA 135
            I +E  +    LK+     +     I D     K         ++    A   L +   A
Sbjct: 308  IKKEYKEDYKTLKDTFDAIKKSVKSILDDLRIDKKVIERENELVYPHMRALSDLVREFRA 367

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSL 190
            +Y+  K +  +++F D+     D+L   D     V++ I     +    I  DE QD++L
Sbjct: 368  YYKGKKLQKSIVEFSDVEHFALDILTSTDDDGRIVASDIARSYQERYQEIFTDEYQDSNL 427

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +Q  ++  ++                F VGD KQSIY F  A P+  + + +       +
Sbjct: 428  VQETILDMVS---------RKDIPNRFMVGDVKQSIYMFRQAMPEIFMGKYKTYDIYEDD 478

Query: 251  AGQ----------------------------KFSIIELPLSFRSTADILTVVDKVFSIPE 282
                                           +   I L  +FRS  +IL   + VF    
Sbjct: 479  VQTGSKDSVQTGSKDSSVQTGLKMESQPPSMRDRKILLYKNFRSRKEILEASNHVFKEIM 538

Query: 283  NAQGLSEDSTTTIRHRS-----------SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
             ++    D T   R              S +G    V + +              +  T 
Sbjct: 539  TSKTGDIDYTDEERLNPGATFKENNIENSHVGGPVEVHILDTKDIDSKDLGQSLLDIKTK 598

Query: 332  YFDSLPQESSASIL-ARRIAYTISNMIGT------------DTIFSNGKKRVIQAKDILV 378
              D    E    +   R  A  I+N+I                       R ++ KDI+V
Sbjct: 599  GLDEQDIEDIKDMEKFRFEAMEIANIIDDIVNPSPEKSRYMVYDNETDDYRPVKYKDIVV 658

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            L R  K+   I      +     I             + +  ++ L + I +   D++ +
Sbjct: 659  LFRSTKNRANI---LEDMLIKRDIPAYSESGGGYFSTIEVTTIINLLKVIDNPIQDIALI 715

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS----KFQHVIKYIHELIHI 494
              ++SP+FN+++ ++ +I     E+                    K    +  + +    
Sbjct: 716  ATMRSPIFNYTDQELARIRLADKESSYYQAIKTFIETSDDKDLVVKLTEFLDRLEKYRQD 775

Query: 495  AQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
            A       F   +       +       G +    L        + E  S+  L   +  
Sbjct: 776  AFLLPIDQFMWKLYKDTGYYRYLEGLAMGEKRQANLILLHEKAKKYEAGSHKGLFNFLHY 835

Query: 554  LEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            +E+   T            + + VRIMT+H +KGLE P+V + +             + +
Sbjct: 836  IERLKMTSSEPKEASLLSEDADLVRIMTIHKSKGLEFPIVIVANMDKNFNLRGDTSVVDL 895

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
               L   P       +       ++ L K  +++ + E  R+LYV MTRA ++LI     
Sbjct: 896  DHKLGYGPKYIDINKKIFYNTTAMTILKKAKQRAVKSEEMRMLYVAMTRAKEKLIFTGCL 955

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
               ++     +  Y  +  +      +K +   + I        +   
Sbjct: 956  KDIDKNLEAWKNTYRDLDGNIDPGSILKSMTYMDWIMPTIVNLEKRQD 1003



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 108/353 (30%), Gaps = 39/353 (11%)

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
            WI +   + ++    +  LK     E   L  V + +      +  H    ++K      
Sbjct: 1022 WIIKFTDKYDVSKKYLDKLKDLEVIEMENLDSVEIKKTKYGKELIDHVELIDDKILIDHA 1081

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                       ++     +  +    +E + +++      + P     T  + +  Q+  
Sbjct: 1082 DLIDDKKLMSCEKSQDDKRPLDKDMINEILNFDYRFKSSASKPSSISVTDIKKLMAQEEN 1141

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
             ++   +   I    + +PS I     +  E +  D +   RG I H ++Q+I       
Sbjct: 1142 DQMHDKLYKTIPSNDLKSPSFIHDSKSSASEPIKHDYKANERGTIFHLVMQLIDFKAFED 1201

Query: 801  RKNFITSYCTKNAKLW--PAKEYKNLLLSIT----------------------RLLENPM 836
               +                   + ++  I                       R + + +
Sbjct: 1202 LVAYQQMSLDMIGLSNENDRPIREEIVRQIDSMVDKNILLRQEADTVNVSWIVRFIRSNI 1261

Query: 837  MTTAMSCDSYSEVSVSGKIN--------------CPKKDIIISGRIDQISI-SQQNIFIF 881
                +  D   ++     IN                 + +++ G ID        +I + 
Sbjct: 1262 YLDILEADKRGDLYKETAINYNIKMKDIYKDQGIMDDESMMMVGIIDLFYENKDGDIILL 1321

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
            +YKT +   +  + +   +  QL +Y++ ++D    K +   L   S  ++  
Sbjct: 1322 DYKTDYVGDRSDQDLIDRYKVQLDLYKRAIEDISGKKVVKKYLYMFSAGRLLE 1374


>gi|320161958|ref|YP_004175183.1| ATP-dependent DNA helicase PcrA [Anaerolinea thermophila UNI-1]
 gi|319995812|dbj|BAJ64583.1| ATP-dependent DNA helicase PcrA [Anaerolinea thermophila UNI-1]
          Length = 737

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 106/714 (14%), Positives = 214/714 (29%), Gaps = 124/714 (17%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKIRDRFN 115
           ++    E+++  L + F+      Q+ +I + +      +   +           ++   
Sbjct: 92  ARILRREQQYLPLDANFVIFDEDDQQALIKRALRDLNLDEKLYRPTSVHAAISNAKNNLI 151

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
             + + +      +   +   Y+E    +  +DF+DL++    LL +    + +R +  +
Sbjct: 152 LPEDYPTATYRDEVVARVYKRYQELLVSSNAVDFDDLLLYAWKLLNE---FSTVREQYAR 208

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
              HIL+DE QDT+L Q+E+++ L              R LF VGDE QSIY + GA+ +
Sbjct: 209 RFEHILVDEFQDTNLAQYELVKLLASY----------HRNLFVVGDEDQSIYRWRGADYR 258

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            VLR +     R          I L  ++RST  +L     V +   N       ST   
Sbjct: 259 NVLRFEEDFPDR--------QKILLEQNYRSTQRVLDAAQAVINRNRNRTPKRLKSTP-- 308

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                                        ++       D   +       A  +  TI  
Sbjct: 309 ------------------------EHGEGEKLVLYEAVDDYGE-------AAFVVDTIQQ 337

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           ++              +  D  ++ R    + L+            +             
Sbjct: 338 LVAGG---------KARPGDFAIMYRTNAQSRLLEEAF----LRAGVPYRLVGAMRFYGR 384

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY------ 469
             +KD++A  R + +  D+ S   ++  P     +     +  +   T            
Sbjct: 385 REVKDMIAYLRLVQNPADEASLGRVINVPPRGIGDKSQLALQMEAQRTGRSAGLILMELG 444

Query: 470 -------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--R 520
                    +      S        + E   +    S    F  IL     R+       
Sbjct: 445 REGKDSPHWQALGRNASLLADFGSLLGEWHRLKDEISLPSLFQRILNDLAYREYIDDNTE 504

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
            G    + + E L      E+     L   +  L             N     ++T+H A
Sbjct: 505 EGQSRWENVQELLRIAYEYEE---KGLTAFLENLALVSDQDT--LPENVEAPTLLTLHAA 559

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE P+VF+      +  H                                        
Sbjct: 560 KGLEFPIVFITGLDDGLIPHNRSLDDP--------------------------------- 586

Query: 641 KSTQEEYNRLLYVGMTRASDQLII--CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                E  RL YVG+TRA  ++ +      +T    + +  + +     +    +  +  
Sbjct: 587 -EAMAEERRLFYVGLTRAKKRVYLVRAAQRSTYGSFQDSIPSRFLKDIPADLIQQDGRGR 645

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           ++  S   +   +++ +      +  ER +     + + +    +     +   
Sbjct: 646 RMGRSWQSESRRSWDDNYAGTWGSRPERAKPSHAPILQPRFKPGMRVKHPSWGE 699


>gi|197264911|ref|ZP_03164985.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
 gi|197243166|gb|EDY25786.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
          Length = 1181

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 122/876 (13%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + +   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESVALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|222474985|ref|YP_002563400.1| DNA helicase II (uvrD) [Anaplasma marginale str. Florida]
 gi|222419121|gb|ACM49144.1| DNA helicase II (uvrD) [Anaplasma marginale str. Florida]
          Length = 671

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 107/612 (17%), Positives = 188/612 (30%), Gaps = 123/612 (20%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTL--A 125
           L   F       Q  +I   +N   P    E+ KK      + +++         T    
Sbjct: 132 LRRDFTVIGPDDQLQLIKAIVNDTQPGHPAEECKKMMHAIQRWKEKGLLPAGVTDTELQK 191

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              + + +   Y+E  K     DF DL++    +       A +     ++  ++++DE 
Sbjct: 192 CPNIVRDVYYEYQERLKALNCADFGDLLLYNVSMFSAH---ADVLSHYQEQFKYVMVDEY 248

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +Q+  +R + +            + +  VGD+ QSIYS+ GAE   +LR      
Sbjct: 249 QDINTVQYLWLRLIVQ----------KRKNICCVGDDDQSIYSWRGAEVGNILRFADDFP 298

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +          I+ L  ++RST++IL     + +  ++  G                   
Sbjct: 299 E--------AKIVRLECNYRSTSNILCAASAIINNNKSRLGKK----------------- 333

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW    + H  Q     + W              + A+ I+  I            
Sbjct: 334 ----LW---TTNHAGQKVGLMKFWDG-----------RMEAQFISEYIK----------- 364

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +  +  +LVR    T +             I           D   IKDL++  
Sbjct: 365 -GSSEYRFDETAILVRAGFQTRVFEEYL----VRCGIPYKIIGSTKFYDRQEIKDLVSYL 419

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGI 478
           R + + ++D++F  ++  P        + K+    R    ++ E                
Sbjct: 420 RVVTNPKNDIAFERIVNKPKRQLGASTVAKMRAYARDNRLSLLESGESMIRFGLLPERTS 479

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFT 536
           +  Q+++             S       I                    I+ + E     
Sbjct: 480 NTLQNLLDKFKCWRETLDTTSLTTVMQAIAEGSGYMNMLKDEGDAGASKIENIRELFAAV 539

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              E        + +  +         +     N V +MT+H AKGLE P+VFL      
Sbjct: 540 GNFENA-----TKFLEHISLVTEVD--SPEQASNHVYLMTLHAAKGLEFPLVFLPGWEEG 592

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           VF H+                                           EE  RL YVGMT
Sbjct: 593 VFPHEKSIHDSTGN--------------------------------ALEEERRLAYVGMT 620

Query: 657 RASDQLIICKHS 668
           RA +QL I   +
Sbjct: 621 RAREQLFISCVA 632


>gi|294669243|ref|ZP_06734323.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308875|gb|EFE50118.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 623

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 110/592 (18%), Positives = 203/592 (34%), Gaps = 120/592 (20%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE L K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 126 KEALFKAQHQISLWKNDLKTPEDVLQTASNAWEEQIARVYASYQETLQSYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQEDYPQ--------MKVIKLEQNYRSTARILKIA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV             S              G  ++ + V  Q++               
Sbjct: 285 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQNE--------------- 317

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                      A  +   I    ++G D           Q  D  VL R      +    
Sbjct: 318 --------QHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 360

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      ++    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 361 LRS----ARVPYQLSGGQSFFDKAEIKDVLSYLRLLANPNDDPAFLRAVTTPKRGIGDVT 416

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 417 LGKLNTYAHEHECSLYEAAQNEEALALLNNTNRQHLQAFMDMFGNYRAKAETSEAGEFIN 476

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + +   +  R  +    ++ EL   +       
Sbjct: 477 SLLKEIDYENHLLASEEGKAGEIKWRNVSDLTGWLERKGEQDGKNIIELAQTVALMTLLE 536

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V++ T+H +KGLE P +FLV     +  H                     
Sbjct: 537 GK-SEEEVDAVKLSTLHASKGLEYPYIFLVGCEEGILPHN-------------------- 575

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            +++   EE  RL+YVG+TRA  QL +       N+
Sbjct: 576 ---------------DSIEEDNVEEERRLMYVGITRAKRQLTLTHCVKRKNK 612


>gi|194290339|ref|YP_002006246.1| DNA-dependent atpase i and helicase ii [Cupriavidus taiwanensis LMG
           19424]
 gi|193224174|emb|CAQ70183.1| DNA-dependent ATPase I and helicase II [Cupriavidus taiwanensis LMG
           19424]
          Length = 782

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 108/671 (16%), Positives = 203/671 (30%), Gaps = 144/671 (21%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K  Q      +++       ++          L A Y+   ++  V+DF +L++   +LL
Sbjct: 138 KNLQYFINNAKEQGLRPADVEANDDFNKRFVDLYAAYDMQCQREGVVDFAELLLRCYELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  D    IR        H+L+DE QDT+++Q++ ++ L            +P  +FAVG
Sbjct: 198 RYNDA---IRQHYQHRFRHVLVDEFQDTNVLQYQWLKLLAGHGT------QNPAAVFAVG 248

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   +   + R         +I+L  ++RS   IL   + + S 
Sbjct: 249 DDDQSIYAFRGANVGNMRDFEHEFRVR--------RMIKLEQNYRSHGHILDSANHLISH 300

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +  +           G    V+++                          Q  
Sbjct: 301 NARRLGKNLRTD---------AGHGEPVRVF--------------------------QGG 325

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           S    A  I   I + I                 +I +L R    + +I           
Sbjct: 326 SDGQEAAWIIEEIRDQIAQG----------ASRAEIAILYRSNAQSRVIEHAL----FSA 371

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            I           +   IK  +A  + + +  +D +F  ++  P        +  +    
Sbjct: 372 GIPYRVYGGLRFFERAEIKHALAYMQLLENPRNDAAFGRVVNFPARGIGARSLEVLQDMA 431

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R     + E +        SK     + I ++    +  +  +    ++        +  
Sbjct: 432 RQYDCALAEAVAYVPGAAGSKLAAFTRLIDQMRADTRRMTLAETVEYVINHSGLITHYQG 491

Query: 520 RF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-------------------------- 552
              G + I+ L E +             L+ L +                          
Sbjct: 492 EKEGQDRIENLQELVTAAQAFVVEEGYGLEALAAVIPAERGPATPVLADGDQSQQLLDPE 551

Query: 553 -----------ELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                       L             A  + V++MTVH AKGLE  VVF+      +F H
Sbjct: 552 ALPVVMTPLVAFLTHASLEAGDNQAQAGQDAVQMMTVHAAKGLEFDVVFISGLEEGLFPH 611

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           ++                                    +     EE  RL+YV +TRA  
Sbjct: 612 ENS----------------------------------MMDPDGLEEERRLMYVAITRARK 637

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L +      +  +  + +T Y +    F          LT        +  +   +   
Sbjct: 638 RLYMS----FAQSRMLHGQTRYHVRSRFFEELPEASLKWLTPPAQSYGGVRRQERDNAWG 693

Query: 721 NTPLEREETIK 731
                + E + 
Sbjct: 694 RDWFRKPEDVP 704


>gi|289757034|ref|ZP_06516412.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85]
 gi|289712598|gb|EFD76610.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85]
          Length = 650

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 107/681 (15%), Positives = 188/681 (27%), Gaps = 136/681 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +      +              +            + L         ++   
Sbjct: 79  AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + +          +    
Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L        N    P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +     +                      
Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +  +  +         I           +   I+D++A  R 
Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478
           + +  D +S   +L +P     +     +     +      + +   A            
Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 ++   EL          +    +L     R++  +    +    +D L+E ++ 
Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542

Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581
                           +         L   LE+            H    V +MT+HTAK
Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE PVVF+      +F H                                         
Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPT--------------------------------- 629

Query: 642 STQEEYNRLLYVGMTRASDQL 662
               E  RL YVG+TRA  + 
Sbjct: 630 -ELSEERRLAYVGITRARQRC 649


>gi|238751473|ref|ZP_04612965.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia rohdei ATCC 43380]
 gi|238710340|gb|EEQ02566.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia rohdei ATCC 43380]
          Length = 1194

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 120/984 (12%), Positives = 288/984 (29%), Gaps = 142/984 (14%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDIN-KYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
              +E+    ++ +        +        L        + K++ + +           +
Sbjct: 199  DEDETLLSRHQQIVVQIDAVKAQWRVAAHELEPLISGSGVDKRSYSTKHLPNWLDKVGIW 258

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            +   +         +K   +    K            Q       D      +    L  
Sbjct: 259  AEQETGDYQLPKELEKFRQSVLFEKTKKGAAP-----QHALFNAIDHLFEQPLTLRDLIL 313

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                  +    ++ K++   L F+DL+   +  L++      +   I       +IDE Q
Sbjct: 314  ARAISEIRETVQQEKRQRAELGFDDLLSKLDAALQQPG-GELLAQTIRTRYPVAMIDEFQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT   Q+ +  +L                L  +GD KQ+IY+F GA+    +R +     
Sbjct: 373  DTDPQQYRIFHTLYGG--------QGDCGLLLIGDPKQAIYAFRGADIFTYIRARSEVSA 424

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
              T          L  ++RS+  ++  V+++FS+ +       +    I    ++     
Sbjct: 425  HYT----------LETNWRSSFPMVQSVNRLFSLVKVPFLF--EQIPFINVTPAKRNSRL 472

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----T 361
            + ++          +  P    W    + +       ++AR+ A  I + +         
Sbjct: 473  SFEI--------KGKKQPAMSFWLQPGEGVGVSEYQQLMARQCAAQIRDWLTAGQQGLAQ 524

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            + +    R +QA DI +LVR R +  L+      L      SV  ++R  + D    KDL
Sbjct: 525  LVTASSSRAVQASDITILVRSRAEAALVRNALSVL---AIPSVYLSNRDSVFDTAEAKDL 581

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            + + + +++ E + +    + + +       +  +       + + +    +        
Sbjct: 582  LWVLQAVVAPEQERALRSAMATGMLGLDAKMLDGLNHDERAWDALVDEFDGYRQHWQR-- 639

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            + V+  + E++              +L    G ++            L E L        
Sbjct: 640  RGVLPMLREMMSRRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLD 687

Query: 542  NSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            + ++ ++ L  ++ Q        +    ++ + V+++T+H +KGLE P+V+L   G+   
Sbjct: 688  SEHALIRWLAQQIAQPNPQSDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVGNFRQ 747

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                +                          N   +     ++    E  RLLYV +TRA
Sbjct: 748  QQDVLYHDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRA 794

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDM-----------VYDSFHNDERVKKIKLTNSINKD 707
                 +         +K    +   +           V ++ +  E++ ++      +  
Sbjct: 795  VYHCSLGIAPLIKGGRKKQGDSDMHLSALGYLVQQGQVGNAQYLGEKLAELAALAGGDIS 854

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI-------------------- 747
               A +      +    +           Q       +                      
Sbjct: 855  VSHAGQLDETPWQPKTADLPALAACQFSRQVHDYWRVTSYSGLQQQGSSKGSISPPLNVL 914

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
              ++      + +           +  +  +    G  +H LL+ +      ++      
Sbjct: 915  LQELLPRLDTDAAGEQAPITEAQFTPHTFPRGAAPGTFLHDLLEPLDFSQPIEQAWLTEQ 974

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLLENP---MMTTAMSCDSYSEVSVSGKINCPKKDI-- 862
               +      +      L  I ++  N     +         +E+     I+   +    
Sbjct: 975  LQLQGFGEQWSDMLYQWLNDIVQVPLNETGVTLAGLTPQSKQAELQFYLPIDSLLQAREL 1034

Query: 863  ------------------------IISGRIDQISISQQNIFIFEYKTHHHVPQEIE---- 894
                                    ++ G ID +   Q   ++ +YK++            
Sbjct: 1035 DTLIKHYDPLSRQCPALDFQQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTAE 1094

Query: 895  -----HIPYTHIAQLSIYEKILKD 913
                    + +  Q  +Y   L  
Sbjct: 1095 AMAQAMAEHRYDLQYQLYTLALHR 1118


>gi|158426099|ref|YP_001527391.1| DNA helicase II [Azorhizobium caulinodans ORS 571]
 gi|158332988|dbj|BAF90473.1| DNA helicase II [Azorhizobium caulinodans ORS 571]
          Length = 835

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 104/534 (19%), Positives = 175/534 (32%), Gaps = 114/534 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+   K    +DF DL++    L ++      +  +  ++  +IL+DE QDT++ Q
Sbjct: 238 LYAAYQARLKALNAVDFGDLLLEGIRLFRENPD---VLAEYHRKFKYILVDEYQDTNVAQ 294

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R L +            R +  VGD+ QSIY + GAE   +LR +           
Sbjct: 295 YLWLRLLAQ----------GSRNVCCVGDDDQSIYGWRGAEVDNILRFESDFP------- 337

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +I L  ++RST  IL     + +  E   G +  S                     
Sbjct: 338 -GAKVIRLERNYRSTGHILAAASHLIAFNEGRLGKTLFS--------------------- 375

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       ++ + T  +DS  +       AR I   I  +                
Sbjct: 376 -------EGEKGEKVTVTGAWDSGEE-------ARAIGDEIEALQRAGHAL--------- 412

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I +LVR              L     ++          +   I+D +A  R ++S  
Sbjct: 413 -SQIAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERAEIRDALAYLRCVISPA 467

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DDL+F  ++  P     +  I +I    R     + E  +      +      S  +  +
Sbjct: 468 DDLAFERIVNVPKRGVGDAAIKQIRDVARAAGVPLMEATRLLTESEELKPKLRSTLRGFV 527

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           +        A+     +   ++L      + +      E    L+         E     
Sbjct: 528 QSFERWREQAENMKHTELAEVVLDESGYTEMWQKDRSAEAAGRLENLKELVRSME----- 582

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             + L   LE     +     A  + V+IMT+H+AKGLE   VFL      +F H+    
Sbjct: 583 GFENLSGFLEHISLVMDVDSGAGDDAVQIMTLHSAKGLEFDTVFLPGWEEGLFPHQR--- 639

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                         +    K+  EE  RL YVG+TRA 
Sbjct: 640 -----------------------------ALDEQGKAGLEEERRLAYVGITRAR 664


>gi|315503768|ref|YP_004082655.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315410387|gb|ADU08504.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 1134

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 128/1007 (12%), Positives = 246/1007 (24%), Gaps = 174/1007 (17%)

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD--LKEKLKKSQDEFIKIRDRFN 115
                ++   S ++   L       ++++  +           +   +    +  +R    
Sbjct: 178  DMSEVDRMPSTITDAVLALAGELDEHLVDPDELAAWTGRFFADVQSRPGRVYADVRKALQ 237

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
              +     L  +         Y   K     +DF D +     + +       I      
Sbjct: 238  LQRTRLKLLPLVR-------AYARRKDDFEAMDFADQLARAARVARDHPGVGVI---ERD 287

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                +L+DE QDTS  Q  ++ +L                + AVGD  QSIY + GA   
Sbjct: 288  RFRVVLLDEYQDTSHAQVVLLNALFG----------GGHPVTAVGDPCQSIYGWRGASAG 337

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
             + R      +     G    ++ L  S+R+  +IL V + +                ++
Sbjct: 338  TLDRFPAEFAR---TDGSPADVLSLTTSWRNRPEILGVANTL----------------SV 378

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
              R++                        Q                A  +A  +   ++ 
Sbjct: 379  PLRAAGARVPELHAALSVRDPIPHRTPGGQAGGTVHCALLETYADEADWIADSV---LAA 435

Query: 356  MIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
              G   +           +     VLVR R   P I    R       + V       L 
Sbjct: 436  WRGAAGMPGALPEHIPADRRPTTAVLVRLRSQIPAIEAALRA----RGLPVDVVGLGGLL 491

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------ 461
            D   ++D++   R +    D  + + +L    +     D+  +  +              
Sbjct: 492  DTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARAIARSRRELTGD 551

Query: 462  ----------ETETVYEYIQKFANCGISKFQHVIKYIH------ELIHIAQFCSPHDFFT 505
                      +  T+ E +                 +        L+      S  +   
Sbjct: 552  EGPEITVDALDEATLVEALADLGPAQAYS-AEGYARLRSYGMELALLRYRLDQSLPELIA 610

Query: 506  LILGAKKGRQQFISRFGNE-------VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQY 557
             I        +   R G +           LD   +   R   +   ++L   ++ L   
Sbjct: 611  DIERTIGLDVEVAVRAGRDGAGDAGLARAHLDALGDVAARFSGETPGATLAGFLAYLAAA 670

Query: 558  PPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                              V+++T H AKGLE  VV +      V+        H +  L 
Sbjct: 671  EDEERGLAPGEVEVVAGAVQVLTAHAAKGLEWDVVAVAGMTRGVWPGPVRNSDHWLGGLG 730

Query: 614  DDPGIPIWIPQSKSRNNIVSD------------LIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              P              +                    +   + E  RL YV +TR    
Sbjct: 731  VLPFPLRGDADGLPELALPEAEDQRGVARALTDFTDAWRAHDEREERRLAYVAVTRPRRL 790

Query: 662  LIICKHSNTSNEKKSNQRTWY--------------DMVYDSFHNDERVKKIKLTNSINKD 707
            L+   +      K+    + +               +V               T ++ + 
Sbjct: 791  LLCSGYWWGEGTKRFRGPSVFLREVHDACLAGADGHVVDAWTPEPAGDAVNPTTETVLRA 850

Query: 708  EWIA----------------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            EW A                       PE    E          +     +        +
Sbjct: 851  EWPADPLGTRRPALTEAAALVRRHLADPETARREAAVLATTGAADDAEVARWRREADLLL 910

Query: 752  NEPYILNPSTIDTKGKTN-----------------------LESLLSDNQTFNRGLIIHK 788
             E   L       + +                                N    RG   H 
Sbjct: 911  AERAELARQAEAVEVELPGQLSVTQLVALRRDPEALARTLRRPMPTEPNPYARRGTAFHA 970

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
             L+  F                   +L  A +           L+   +    +      
Sbjct: 971  WLEQRFGTD----------RLLDVDELPGAADEDAAPDEALAELQERFLAGEWAD--RVP 1018

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            V V          ++I GR+D +       + + ++KT                 QL++Y
Sbjct: 1019 VEVEVPFATVIAGVVIRGRMDAVFARPGGRYDVVDWKTGRQPAGREADAA---AVQLAVY 1075

Query: 908  EKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
                 +    P   +     YV +            +  A +   +P
Sbjct: 1076 RLAWAELAGVPVDRVGAAFHYVRDSATVRPADLLDAEGLAALVAAVP 1122


>gi|325198582|gb|ADY94038.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis G2136]
          Length = 671

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 201/611 (32%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
               VGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTTVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW ++      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + + +++  R       ++ EL   +       
Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVSDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|315125235|ref|YP_004067238.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913]
 gi|315013748|gb|ADT67086.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913]
          Length = 721

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 100/585 (17%), Positives = 200/585 (34%), Gaps = 121/585 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A Y+EA  +  ++DF ++++ + ++LK       +     Q   H+L+DE QD
Sbjct: 167 QMMLRVYAAYQEACDRAGLVDFAEILLRSYEVLKNNPT---LLRHYQQRFAHMLVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ+  ++ L  D             +  VGD+ QSIY + GA+ + + R        
Sbjct: 224 TNTIQYAWLKLLAGDTSS----------IMIVGDDDQSIYGWRGAKIENIKRFLTDF--- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RSTA IL   + +        G S                   
Sbjct: 271 ------DAETIRLEQNYRSTATILKASNALIQNNSERMGKS------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +  S  + F+ L +       AR ++  + + +          
Sbjct: 306 --LW-------TDGNDGEPISIYAAFNELDE-------ARFVSSKLRSWLNAGNAL---- 345

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 +D  +L R    + ++            +           +   IKD ++  R 
Sbjct: 346 ------QDAAILYRSNAQSRVLEEAM----LQEGLKYRIYGGMRFFERQEIKDALSYLRL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISK 480
           + +++DD +F  ++ +P     +  +  I    R E+  ++         Q  +      
Sbjct: 396 VGNRQDDAAFERVINTPARGIGDKTLSHIRDCARAESLPLWYAAKAIVEQQHLSGRASGA 455

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
               ++ I  +       + H+     +        + +  G +    ++ L+E ++   
Sbjct: 456 VAKFVELIEHIEDKISDLTLHEQAKYAIQTSGLMAMYQAEKGEKGRARVENLEELISACD 515

Query: 538 RNE----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           + E    +   S LQ  ++               + + V++MT+H+AKGLE P+VF+V  
Sbjct: 516 QYELPEEEEFSSPLQGFLAYTSLESGE--GQADEHEDAVQMMTLHSAKGLEFPLVFMVGV 573

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F  +                                      +    EE  RL YV
Sbjct: 574 EEGMFPSQQSN----------------------------------EETGRLEEERRLCYV 599

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           GMTRA D+L I    +     +    +    + +   +     +I
Sbjct: 600 GMTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRI 644


>gi|21244868|ref|NP_644450.1| DNA-dependent helicase II [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110576|gb|AAM38986.1| DNA helicase II [Xanthomonas axonopodis pv. citri str. 306]
          Length = 730

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 100/575 (17%), Positives = 190/575 (33%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 156 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 212

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 213 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 262

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 263 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 309

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           N       + ++ + +       AR +   
Sbjct: 310 ----------------QLW-------TDSGNGDPIDLYAAYNEVDE-------ARYVVER 339

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 340 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISEQLPYRVYGGMRF 385

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 386 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARASALSLWEAAM 445

Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  I +L          +    +L     R+ +        
Sbjct: 446 LCTQQNTLAARARNALATFLSLIGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGL 505

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L             A    V++MT
Sbjct: 506 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGAGQAQAGEEGVQLMT 565

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 566 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 591

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 592 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 626


>gi|237729781|ref|ZP_04560262.1| exonuclease V subunit beta [Citrobacter sp. 30_2]
 gi|226908387|gb|EEH94305.1| exonuclease V subunit beta [Citrobacter sp. 30_2]
          Length = 1181

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 126/874 (14%), Positives = 276/874 (31%), Gaps = 123/874 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D   +  +    L        + +   E K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDELLSEPLTLRDLVITRALAEIRSAVAEEKRRRGELGFDDMLSRLDAALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R + +        H     L  +GD K
Sbjct: 365  ESGDALATAIRTRFPVAMIDEFQDTDPQQYRIFRRIWQ--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+ +FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNTLFSQMDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E   + ++          + +  + +      +  P    W    +S       S
Sbjct: 467  AFMFREIPFSPVK----------SAEKNQALRFVLHGETQPAMSMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + S      ++A DI VLVR R++  L+      L  
Sbjct: 517  YMAQVCATQIRDWLKAGHSGAAQLVSGKASSPVRASDISVLVRSRQEAALVRDALTQL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++L+ + + +++ E + +    L + +   +  DI  + T
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQELLWVLQAVMTPERENTLRSALATSMMGLNAQDIEALNT 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
              +  + V E    +        + V+  +  L       +       +L    G ++  
Sbjct: 634  DENAWDAVVEEFDGYRQIWHK--RGVMPMLRAL------MTARQIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGSQLESEHALVRWLSQHILEPDSNASSQQLRLESDKHLVKIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                       +    +   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRSSFE-------------AVLDLSDAEES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            ++  +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
             +  + L  +I           T         +       E   +++  +       +  
Sbjct: 847  PMDAVGLRGAIEALCSNDIACQTPAQPDGEPWQVAQAVSSELSAKILQRKPGDSWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + I    + +  +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGQGIAQDLIPRLDIDAAGIGEVIEESGLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGK 854
                                       L +I +   N     ++   + +   E+     
Sbjct: 967  PVDPHWVEEQLALGGYDAHWTPILTEWLDAILQAPLNETGVSLSQLSAREKQVEMEFYLP 1026

Query: 855  INCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHH 888
            I+ P                              ++ G ID +   Q   ++ +YK++  
Sbjct: 1027 ISQPLMANQLDALIRQYDPLSAGCPALDFMQVRGMLKGFIDLVFRHQGRYYLLDYKSNWL 1086

Query: 889  VPQEIEHI---------PYTHIAQLSIYEKILKD 913
                  +           + +  Q  +Y   L  
Sbjct: 1087 GEDSSAYTQQAMASAMQAHRYDLQYQLYTLALHR 1120


>gi|330908872|gb|EGH37386.1| exodeoxyribonuclease 5 beta chain [Escherichia coli AA86]
          Length = 1180

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 132/971 (13%), Positives = 295/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGEMQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQT 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          + ++    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      +      D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|110806757|ref|YP_690277.1| exonuclease V subunit beta [Shigella flexneri 5 str. 8401]
 gi|110616305|gb|ABF04972.1| ATP-dependent dsDNA/ssDNA exonuclease V subunit [Shigella flexneri 5
            str. 8401]
          Length = 1180

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 273/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLLITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                 E     ++                 +      +  P  + W    +S       S
Sbjct: 467  TFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|313159744|gb|EFR59101.1| putative ATP-dependent helicase PcrA [Alistipes sp. HGB5]
          Length = 858

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 101/676 (14%), Positives = 207/676 (30%), Gaps = 131/676 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y +  K+N  +DF+DL++ TN LL+    +  +  +  ++  +IL+DE QDT+  Q
Sbjct: 195 IYNIYCQRCKRNGAMDFDDLLLQTNILLRD---APDVLARYQEQFKYILVDEYQDTNYAQ 251

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +IR L++              +  VGD+ QSIYSF GA+ + +L  ++          
Sbjct: 252 YVIIRRLSQL----------HSKVCVVGDDAQSIYSFRGAKIENILSFQKDFP------- 294

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               + +L  ++RST  I+   + V             S                     
Sbjct: 295 -DAMVFKLEQNYRSTRTIVDAANSVIVRNSKRMEKHCFS--------------------- 332

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                 +           +Y D           A  +   + + I              +
Sbjct: 333 ------EGDKGEPIRILKAYTDREE--------AEMVVSDLRDKIRQ---------TGDE 369

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             + ++L R    + ++    R       +           DH  +KD++A  R +++  
Sbjct: 370 WSEAVILYRTNSQSAVLEDNLR----RRGVPYRIYKGSSFYDHKEVKDMLAYIRLVINPR 425

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS---------KFQ 482
           DD +F  ++  P     +  + +I         +++E +        +         K  
Sbjct: 426 DDEAFKRIVNYPARGIGDTTVQRIAELAAGRGVSMWEAVDTLVAEPAADPVQKTIARKVS 485

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
             +  I  L       S +DF   I         + +    E    +D ++E LN     
Sbjct: 486 DFVAMIRGLSLARNEKSLYDFGLEIATRSGIIAAYRTENTPEATSALDNIEELLNSMQLF 545

Query: 540 EQNSYSSLQE----------LISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPV 587
           ++   + ++           +   L+       + +    + N+V +MTVH+AKGLE   
Sbjct: 546 KEQRDAEIRSGERQEDEEATIDEWLQNVMLMTDMDKDDPEDRNKVTLMTVHSAKGLEYKY 605

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V++V     +F  +                                           EE 
Sbjct: 606 VYIVGLEENLFPSQ----------------------------------RAAESPDGIEEE 631

Query: 648 NRLLYVGMTRASDQLIICKHS---NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            RL YV +TRA  +  I          N + S    +   +   +   +     +     
Sbjct: 632 RRLFYVALTRAKVEATISYAEMRFKWGNMEFSRPSCFLREIDPKYVRADFDAGEERPRRP 691

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                 +         +   +++    +        +  F    +        + S    
Sbjct: 692 QDGAGPSAIDELRRRFDYRFQQKRQADRAGGNNGGQQGGFGGRGSSFGGRSADDQSGPAR 751

Query: 765 KGKTNLESLLSDNQTF 780
           +         +     
Sbjct: 752 RFARAAAPQGARPAGR 767


>gi|303237262|ref|ZP_07323832.1| putative ATP-dependent helicase PcrA [Prevotella disiens
           FB035-09AN]
 gi|302482649|gb|EFL45674.1| putative ATP-dependent helicase PcrA [Prevotella disiens
           FB035-09AN]
          Length = 841

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 106/728 (14%), Positives = 211/728 (28%), Gaps = 124/728 (17%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAH 136
            T  K++   +   K+  +   +  +++  I      N     +   A+ +     +   
Sbjct: 130 KTIVKSLGIDDKKYKASSVHGLISMAKNHLITADAYSNDQAAKERDRAAQMPAVSQIYTT 189

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y+   +++  +DF+DL++NT  L ++ +    I  K  +   +IL+DE QDT+++Q  ++
Sbjct: 190 YQAHCRQSNAMDFDDLLVNTYRLFQEHED---ICKKYAERFQYILVDEYQDTNVVQTAIV 246

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L +            + +  VGD+ QSIYSF GA    +L  +               
Sbjct: 247 QLLAQQ----------HQRICVVGDDYQSIYSFRGANIDNILDFQNRF--------NDVK 288

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           + +L  ++RST  I+   + +             S                         
Sbjct: 289 VFKLERNYRSTQKIVEAANSLMKHNSRQIPKDVYS------------------------- 323

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
               +    + S+   +    +       A  +   I+ +          +++  +    
Sbjct: 324 ---KESEGAKISYKPCYSDREE-------AMVVVKEINQL---------KRRQSFEYDAF 364

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R    +       R       I               IKD++A  R + +  D+ +
Sbjct: 365 AILYRTNAQSRSFEDELR----KNNIPYQIFGGTAFYQRKEIKDIIAYFRMVANPNDEEA 420

Query: 437 FVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE-------YIQKFANCGISKFQHVIKYI 488
           F  ++  P        I K +        +++E       Y        ++K       I
Sbjct: 421 FKRIVNYPARGIGNTTIQKILDCADEHQVSLWEIVSDPLKYNLAVNKGTLAKINGFTDII 480

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS 545
              I        +   + I+       +       E     + LDEFL       + +  
Sbjct: 481 TNFIKQLATTDAYTLGSEIIKESGMMAELNRGIEAEDVARRENLDEFLGSLQAFVEGNRE 540

Query: 546 S-------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                   L + + E+  Y    K   + +  +V +MT+H AKGLE PVVF+V     VF
Sbjct: 541 EGREEETFLTDFLQEVSLYSDLDK--ATEDKPKVTLMTIHAAKGLEFPVVFIVGLEENVF 598

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            ++                                                  YV MTRA
Sbjct: 599 PNQMSATSLRELEEERRLL----------------------------------YVAMTRA 624

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
               I+    N               + D         +    NS           ++  
Sbjct: 625 EQFCILTNAKNRYRYGSMQFNNPSRFIADIDPKYIAADEEMSLNSGGTGRMPWDRPASSD 684

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                   +        E    +K       +                +   E  +    
Sbjct: 685 NFRDYEPNKPYTGSREWESGNFQKGGRWQNANPVASQFRADPKPKITERKAPERAIDPLS 744

Query: 779 TFNRGLII 786
              +  ++
Sbjct: 745 ARTKQRLM 752


>gi|320539382|ref|ZP_08039051.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str.
           Tucson]
 gi|320030507|gb|EFW12517.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str.
           Tucson]
          Length = 720

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 103/580 (17%), Positives = 188/580 (32%), Gaps = 116/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   ++L+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNVLVDEFQDTNSI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  I  L            S   +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIHLLAG----------SNSNVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + L  ++RST++IL   + + +      G +                     LW
Sbjct: 273 --GAKTLRLEQNYRSTSNILEAANTLIAHNAGRMGKN---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S    F+ L +       AR +   I                  
Sbjct: 310 -------TDGGQGEPISIYCAFNELDE-------ARFVVNRIKTWQDNGGTL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +S          +   IKD +A  R I ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQAAMSYRIYGGQRFFERQEIKDALAYLRLISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHV 484
            DD +F  ++ +P        +  +    R    T++   ++  +         S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGIGGRTLDVVRQAARDRQLTLWRATRELLHEKVLAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKG---RQQFISRFGNEVIDVLDEFLNFTLRNE- 540
            + +  L H       H     ++         QQ     G   I+ L+E +  T +   
Sbjct: 462 TELVDSLAHETAEMPLHIQTDRVIRDSGLFIMYQQEKGEKGQARIENLEELVTATRQYSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q     L  L + L        +    A  + V++MT+H+AKGLE P+VF+V     +F 
Sbjct: 522 QEEDQDLMPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAKGLEFPLVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMSLDESG----------------------------------RLEEERRLAYVGVTRAM 607

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +L +          K         + +   +     +++
Sbjct: 608 QKLTLTYAETRRLYGKEVYHRPSRFIGELPEHCMEEVRLR 647


>gi|294155500|ref|YP_003559884.1| ATP-dependent DNA helicase [Mycoplasma crocodyli MP145]
 gi|291600036|gb|ADE19532.1| ATP-dependent DNA helicase [Mycoplasma crocodyli MP145]
          Length = 724

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 110/571 (19%), Positives = 187/571 (32%), Gaps = 115/571 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y E   K   LDF+DLI+    L  K      I  K  +  +HIL+DE QD
Sbjct: 171 DIVPKVYNLYTEFLIKKGCLDFDDLILKVEYLFDKNPD---IAEKWSKYFSHILVDEFQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS  Q+ +I+ +           +    L  VGD  Q+IY++ GA    +L   +     
Sbjct: 228 TSTSQYRIIQKVC----------NPNTHLTIVGDPDQTIYNWRGANVNLILDFDKDYP-- 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL   +K+     N      D                 
Sbjct: 276 ------DAKTIVLNKNYRSTKLILRAANKLIRNNNNRFSKDLD----------------- 312

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                          N +   +   F+   +       AR +   I+ +           
Sbjct: 313 -----------TDNPNGKDIEFFHAFNMEAE-------ARWVVQKINELRKQ-------- 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              IQ K+I +L R    +            +  IS    +         IKD +A  R 
Sbjct: 347 --KIQLKNIAILYRSNFYSRAFEEEL----INENISHKIFNGVKFFQRSEIKDALAFLRV 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC-------GIS 479
           I    D ++   ++  P     +  + K+         T+++Y+ KF             
Sbjct: 401 IYDGSD-IALERIINVPKRGIGDVTLAKLKKYAEDHNLTLHDYLMKFYKSLPLSPKLIKE 459

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTL 537
           +    +  I +        S     + +L      ++           ID + E +    
Sbjct: 460 QIFPFLSIIVKYRSALNNNSISIVLSKMLEEIGFYKEIKQDQNISGSAIDNVKELIRSIE 519

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             E  +    + +   LE            ++ N + +MTVH+AKGLE   VF+V    +
Sbjct: 520 NWESKNKD--KTIKEYLELVSLLSASDEFDSDPNYISLMTVHSAKGLEFDNVFVVGLTEE 577

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F  +    ++ + + +D                              EE  RL YV +T
Sbjct: 578 IFPSRKALVLNNLTNPSDG----------------------------LEEERRLAYVAIT 609

Query: 657 RASDQLIICKHSN---TSNEKKSNQRTWYDM 684
           RA D+L I         +N++K   R   +M
Sbjct: 610 RAKDRLFISDSRGLLFETNKEKEPSRFIEEM 640


>gi|289666094|ref|ZP_06487675.1| DNA-dependent helicase II [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 723

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 98/575 (17%), Positives = 191/575 (33%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 149 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 205

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 206 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 255

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 256 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 302

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR +   
Sbjct: 303 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 332

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 333 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISEQLPYRVYGGMRF 378

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 379 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 438

Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  + +L          +    +L     R+ +        
Sbjct: 439 LCTQQNTLAARARNALATFLSLVGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGL 498

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    V++MT
Sbjct: 499 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 558

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 559 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 584

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 585 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 619


>gi|255323798|ref|ZP_05364924.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum SK141]
 gi|255298978|gb|EET78269.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum SK141]
          Length = 1059

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 138/959 (14%), Positives = 272/959 (28%), Gaps = 150/959 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIK 109
              ++  +     +   + ++   L         +     I + + D +  +         
Sbjct: 153  DVVRNYTGQLEDDRALATITETLLKFSQDIDNGLKDTSHIAEHARDFRADIDNLDKSQKN 212

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
              +       +  T         L    ++ + +  V+ F + +     + +   V   +
Sbjct: 213  GPEYSQKLLEYIHTQERRVQYVPLLEALKKEQSERQVITFGEQMAVAARVARDHPV---V 269

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              +  Q    +++DE QDTS  Q  ++RSL               ++ AVGD  Q+IY +
Sbjct: 270  GKQQSQRYKVVMLDEYQDTSYAQRVLLRSLF-------GGDQEDLSVTAVGDPMQAIYGW 322

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA  + +              G      +L +S+R+ +  L + + V            
Sbjct: 323  RGATSENLTAFVEDFPV---APGTPAPKDQLTISWRNPSGALDLANSVAEGVFEGVERPV 379

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            D  +   H+       G +QL        + +   +                        
Sbjct: 380  DELSAAPHK-----GEGEIQLAYFDSEAREREFVAE------------------------ 410

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                        +     KR        VLVR  + +  I        +   +       
Sbjct: 411  -----------YLKDQWDKREGDTFSAAVLVRINRHSAPIAAAL----DKAGVPNEIIGL 455

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              L     I+DL+A+   ++  ED  + V +L  P+      DI  + ++        E 
Sbjct: 456  GGLLWQPEIQDLVAIATMLVRPEDLPAAVRVLAGPICGLGISDIQALASRLRNLAGAREE 515

Query: 470  IQKFANCGIS-----------------------------------------KFQHVIKYI 488
              ++                                               + + V   +
Sbjct: 516  RLRWEPGMDPEEYLRAQLEDVTAEEPDQRVGLADALADLGERDRYTPQGLARMEEVSAKL 575

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSL 547
              L   +      D F  I      R + ++R        LD+F +       +S Y+ L
Sbjct: 576  RHLRTYSLSKPLVDIFADIEALFNIRTEVLARGSAGGATHLDKFADIVAGFHGDSLYALL 635

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV---FSHKHIK 604
                  LE+          A  + V+IMT H AKGLE   V +V   S      +   + 
Sbjct: 636  DYFALALEKEDGLDLGEVPAATDRVQIMTAHKAKGLEWEHVCVVHADSSSYSAKAETFLS 695

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            ++  +P  +D   +P    +    +N   +  K       EE  RL YV +TR    L +
Sbjct: 696  RIDKVPGDDDYIEVPEDAEKRSDFHNACEEFKKADSAIKAEESARLFYVALTRTESTLTV 755

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA------------- 711
                  +   K+ +  +  +        + V +  + +  ++D++               
Sbjct: 756  TGSGTNNLNGKNKKAPYEYLERLKEQFPQYVVEWSVPDEPSEDDYGESAQFPALQASPEA 815

Query: 712  -------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST--- 761
                    E     P+ +  E  E  +Q         K       D+  P  L  S    
Sbjct: 816  VAGADMVLEAMEELPDLSRGETFELWEQEAGALIEEYKALQQPVVDVELPSELTASDMVA 875

Query: 762  -----IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
                 +    +         N    RG   H  L+         R         +     
Sbjct: 876  LRADPLQFARRQRRPVPFKPNSYAKRGTAFHAWLE--------DRFGSPALLGEEELPGI 927

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQ 875
               E  +L       L +         +   E  V         + ++ GR+D +     
Sbjct: 928  DEPEDFDLEELKEAFLNSEW------AERQPEH-VEAPFEITIGEAVVRGRMDAVFRLED 980

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
                + ++KT      E          QL++Y +  +  +  + +     YV +   F 
Sbjct: 981  GTWMVVDWKTGRPPQGEAMDAA---KIQLAVYAEAWRRIHGGEKIRAAFYYVHDGYTFE 1036


>gi|78049804|ref|YP_365979.1| DNA-dependent helicase II [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325926001|ref|ZP_08187367.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118]
 gi|78038234|emb|CAJ25979.1| DNA helicase II [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325543597|gb|EGD15014.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118]
          Length = 723

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 99/575 (17%), Positives = 191/575 (33%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 149 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 205

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 206 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 255

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 256 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 302

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR +   
Sbjct: 303 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 332

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 333 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISEQLPYRVYGGMRF 378

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 379 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARASALSLWEAAM 438

Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  I +L          +    +L     R+ +        
Sbjct: 439 LCTQQNTLAARARNALASFLSLIGQLHAETGQMELAERIDHVLMRSGLREHWAKESRGGL 498

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    V++MT
Sbjct: 499 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 558

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 559 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 584

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 585 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 619


>gi|218768450|ref|YP_002342962.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491]
 gi|254805228|ref|YP_003083449.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
 gi|121052458|emb|CAM08794.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491]
 gi|254668770|emb|CBA06672.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14]
 gi|325128494|gb|EGC51372.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis N1568]
          Length = 671

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 111/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW ++      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSKLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + + +++  R       ++ EL   +       
Sbjct: 478 SLLEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|312964904|ref|ZP_07779144.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 2362-75]
 gi|312290460|gb|EFR18340.1| exodeoxyribonuclease V, beta subunit [Escherichia coli 2362-75]
          Length = 1170

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 131/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 205  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 262

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  ++     +    L     
Sbjct: 263  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIEQLLAEPLSIRDLVITRA 321

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 322  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 380

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 381  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 432

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 433  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 476

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 477  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 532

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 533  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 589

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 590  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 641

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 642  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 695

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 696  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 755

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 756  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 802

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 803  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEAQDAAGLRTCIEALCDDDIAWQTAQI 862

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 863  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 922

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          +  +    
Sbjct: 923  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 979

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L  P+      ++     D   E+     I+ P                   
Sbjct: 980  LTEWITTVLLAPLNETGISLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1039

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1040 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1099

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1100 QYQLYTLALHR 1110


>gi|294012133|ref|YP_003545593.1| DNA helicase II [Sphingobium japonicum UT26S]
 gi|292675463|dbj|BAI96981.1| DNA helicase II [Sphingobium japonicum UT26S]
          Length = 758

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 107/551 (19%), Positives = 171/551 (31%), Gaps = 120/551 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y+   +     DF DL+++   +LK+      +     Q   +I++DE QDT+ 
Sbjct: 181 QKLYAAYQARLRDVNACDFGDLLLHVLTILKRH---RDVLESYQQRFRYIMVDEYQDTNS 237

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +          S + +  VGD+ QSIYS+ GAE   +LR +         
Sbjct: 238 SQYLWLRLLAQ----------SSKNICCVGDDDQSIYSWRGAEVANILRFENDFP----- 282

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II L  ++RST  IL     V +   N  G +                     L
Sbjct: 283 ---GAKIIRLEQNYRSTPHILGAASGVIAENGNRLGKT---------------------L 318

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W  +      +       W    +           ARR+   I ++              
Sbjct: 319 WTDIDVGEKVR---VIGVWDGPEE-----------ARRVGEEIESIERGGRSLD------ 358

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               ++ +LVR +  T               +       F   +   I+D +A  R +  
Sbjct: 359 ----EVAILVRAQHQTREFEDRF----IQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQ 410

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++  P     +  + K+    R E   +           +           
Sbjct: 411 PADDLAFERIVNVPKRGLGDKAVEKLHRLARTEGVPLALAAARILDTDEMTPQARRSLGA 470

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            I  +      A      +    IL          +    E    ++ L E        E
Sbjct: 471 FIGDLARWRDRAAQLPHAELARQILDESGYTAMLQAERTAESAGRLENLSELARAMEEYE 530

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L + LE     +     A+  +V IMT+H AKGLE   VFL      +F  
Sbjct: 531 T--------LGAFLEHVSLVMDNEAQADERKVTIMTIHAAKGLEFDTVFLAGWEEGIFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +       + S                                 EE  RL YV +TRA  
Sbjct: 583 QRALDEGGLNS--------------------------------LEEERRLAYVAITRARK 610

Query: 661 QLIICKHSNTS 671
             II   +N  
Sbjct: 611 SCIILHAANRR 621


>gi|167570197|ref|ZP_02363071.1| DNA helicase II [Burkholderia oklahomensis C6786]
          Length = 786

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 107/747 (14%), Positives = 220/747 (29%), Gaps = 159/747 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHHRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T +       L   Y++  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPDKVDATDSFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFENEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++ T           +   ++ VL R    +  I            I          
Sbjct: 334 IRSLVNTG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIPYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPSDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        I ++       S  +    ++ A    + +   R G + ++ L 
Sbjct: 440 YVTGKAGTSLGAFANLIAKMRAETAQMSLPETVEHVVRASGLAEFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGDADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              ++    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------AVESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +    +     ++          +   +  +    K+                      P
Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFARP 705

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKND 750
               +++        +P       + +
Sbjct: 706 GGARDSVVDAAVSAPLPAFANQQREAE 732


>gi|167769939|ref|ZP_02441992.1| hypothetical protein ANACOL_01280 [Anaerotruncus colihominis DSM
           17241]
 gi|167667930|gb|EDS12060.1| hypothetical protein ANACOL_01280 [Anaerotruncus colihominis DSM
           17241]
          Length = 788

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 109/670 (16%), Positives = 210/670 (31%), Gaps = 131/670 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L  +     +       + +       +++    +  +     +    
Sbjct: 121 AAGELRDRLAAMLGSVASDVNASTFHSACVRILR---REIERIGYGRSFAIYDTDDSIR- 176

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L    L +    +K    + I  +    K++L+   D    + + +            L
Sbjct: 177 -LIKAALKELNVDEKRFSPRSILSEIGRAKDELRTPADFAATVGEDYR-----------L 224

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +    +DF+D+I+ T  + ++   +        +   ++++DE QD
Sbjct: 225 QVVSKVYERYQRQLENANAVDFDDIIMLTVRVFQQYPDA---LETYRRRYRYVMVDEYQD 281

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E++R L  +             L  VGD+ QSIY F GA  + +L+ +      
Sbjct: 282 TNHAQFELVRLLASE----------SGNLCVVGDDDQSIYKFRGATIENILQFEDTFP-- 329

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +  L  ++RST  IL   + V       +G +  +              G 
Sbjct: 330 ------GARVFRLEQNYRSTGTILDAANAVIEHNTARKGKTLWTQN---------DTGGK 374

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V+++       +                          AR +  TI   +          
Sbjct: 375 VRVYRAADEGEE--------------------------ARFLCDTIQENVKNG------- 401

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D +VL R    +  I            I           +   IKD++A    
Sbjct: 402 ---ARYADHVVLYRMNAQSQAIERGL----TKAAIPYRIIGGLRFYERKEIKDVVAYLSV 454

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN-----CGISKF 481
           I +Q D L    ++  P     E  I  +      E +TV++ +                
Sbjct: 455 INNQADTLRLRRIINEPKRKIGESTIAAVAELAAGEGKTVFDVLAHADEYASLGRKAQDL 514

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRN 539
                 I +L+ +A      +    +L      +   ++   G   I+ ++E  +   R 
Sbjct: 515 MSFASMIQKLVDLADKVLLDELLDTLLEETGYLRMLQAQGPEGQARIENIEELKSTMHRY 574

Query: 540 EQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E+     SL   + E+  Y         +  + V +MT+H+AKGLE   VF+V     +F
Sbjct: 575 EEETDEPSLSGFLEEISLYTDLDNYD--SAADMVVLMTMHSAKGLEFDYVFVVGAEEGLF 632

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                         EE  RL YV +TRA
Sbjct: 633 PGMQAMNNP----------------------------------EQIEEERRLAYVSITRA 658

Query: 659 SDQLIICKHS 668
             QL I   +
Sbjct: 659 KKQLYISTAA 668


>gi|56416619|ref|YP_153693.1| DNA helicase II [Anaplasma marginale str. St. Maries]
 gi|56387851|gb|AAV86438.1| DNA helicase II [Anaplasma marginale str. St. Maries]
          Length = 671

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 108/612 (17%), Positives = 189/612 (30%), Gaps = 123/612 (20%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTL--A 125
           L   F       Q  +I   +N   P    E+ KK      + +++         T    
Sbjct: 132 LRRDFTVIGPDDQLQLIKAIVNDTQPGHPAEECKKMMHAIQRWKEKGLLPAGVTDTELQK 191

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              + + +   Y+E  K     DF DL++    +       A +     ++  ++++DE 
Sbjct: 192 CPNIVRDVYYEYQERLKALNCADFGDLLLYNVSMFSAH---ADVLSHYQEQFKYVMVDEY 248

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +Q+  +R + +            + +  VGD+ QSIYS+ GAE   +LR      
Sbjct: 249 QDINTVQYLWLRLIVQ----------KRKNICCVGDDDQSIYSWRGAEVGNILRFADDFP 298

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +          I+ L  ++RST++IL     + +  ++  G                   
Sbjct: 299 E--------AKIVRLECNYRSTSNILCAASAIINNNKSRLGKK----------------- 333

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW    + H  Q     + W              + A+ I+  I            
Sbjct: 334 ----LW---TTNHAGQKVGLMKFWDG-----------RMEAQFISEYIK----------- 364

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +  +  +LVR    T +             I           D   IKDL+A  
Sbjct: 365 -GSSEYRFDETAILVRAGFQTRVFEEYL----VRCGIPYKIIGSTKFYDRQEIKDLVAYL 419

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGI 478
           R + + ++D++F  ++  P        + K+    R    ++ E                
Sbjct: 420 RVVTNPKNDIAFERIVNKPKRQLGASTVAKMRAYARDNRLSLLESGESMIRFGLLPERTS 479

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFT 536
           +  Q+++             S       I                    I+ + E     
Sbjct: 480 NTLQNLLDKFKCWRETLDTTSLTTVMQAIAEGSGYMNMLKDEGDAGASKIENIRELFAAV 539

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              E        + +  +         +    +N V +MT+H AKGLE P+VFL      
Sbjct: 540 GNFENA-----TKFLEHISLVTEVD--SPEQANNHVYLMTLHAAKGLEFPLVFLPGWEEG 592

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           VF H+                                           EE  RL YVGMT
Sbjct: 593 VFPHEKSIHDSTGN--------------------------------ALEEERRLAYVGMT 620

Query: 657 RASDQLIICKHS 668
           RA +QL I   +
Sbjct: 621 RAREQLFISCVA 632


>gi|293364067|ref|ZP_06610803.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma alligatoris
           A21JP2]
 gi|292552557|gb|EFF41331.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma alligatoris
           A21JP2]
          Length = 722

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 109/566 (19%), Positives = 184/566 (32%), Gaps = 115/566 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +  HY     +   LDF+DLI+    LL+     + +  K     +HIL+DE QDTS  Q
Sbjct: 176 IYNHYTNYLVEKGYLDFDDLILKVEYLLENN---SDVAKKWSNYFSHILVDEFQDTSSSQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +++ L  +             L  VGD  Q+IY++ GA    +L   +          
Sbjct: 233 YHIVQKLCNENTH----------LTIVGDPDQTIYNWRGANVNLILDFDKEYP------- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +IL   + +    +N       +   +                 
Sbjct: 276 -DSKTIVLNHNYRSTKNILDAANMLIKHNKNRYSKDLIANNHV----------------- 317

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       + E +           S    AR +   I+ +            + IQ
Sbjct: 318 ----------GEEIEFYH--------GFSMEAEARWVVQKINELRK----------KKIQ 349

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K+I +L R    +               IS    +         IKD +A  R I    
Sbjct: 350 LKNIAILYRSNYYSRAFEEEL----LGESISHKIFNGTKFFQRSEIKDALAFLRVIYDGS 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG-------ISKFQHV 484
           D ++   ++  P     E  + KI     +   ++++Y+               +K    
Sbjct: 406 D-IALERIINVPTRGIGEVTLAKIKKEANNLNISLHDYLINHFKVMPINKNVIKNKIFPF 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRNEQN 542
           +K I +          +     +L   +  +Q            D + E +      E+ 
Sbjct: 465 LKIIVKYKSALMKNPINVVLNKMLEDLEFYKQIKQDQNLSGTATDNVQELIRSIAAWEEK 524

Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +    + +   LE               N V +MTVH+AKGLE   VF+V    ++F + 
Sbjct: 525 NPD--KGIKEYLELVSLLSASDEYDTEPNYVSLMTVHSAKGLEFDNVFVVGLTERIFPNY 582

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                +   S +D                              EE  RL YV MTRA ++
Sbjct: 583 KALDSNNFLSSSDG----------------------------LEEERRLAYVAMTRARNK 614

Query: 662 LIIC---KHSNTSNEKKSNQRTWYDM 684
           L I     +   + EKK   R   +M
Sbjct: 615 LFISDSRGYLMDTKEKKEPSRFIKEM 640


>gi|297566348|ref|YP_003685320.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
 gi|296850797|gb|ADH63812.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
          Length = 726

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 114/700 (16%), Positives = 213/700 (30%), Gaps = 134/700 (19%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
              ++      V+  NK      E     + + A  L  ++          +   +   +
Sbjct: 54  EHRVYAGEILAVTFTNKAAGEMKERLGKMVGRAAHDLWVSTFHSAALRILRVYGEWVGLK 113

Query: 77  KF----------TPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
                       T  K I+     +  P  ++  L + ++    I +       +     
Sbjct: 114 PGFVVYDDDDQNTLLKEILKDLGLEAKPGAVRAVLDRIKNRLGGISEFLRDAPDY-VAGI 172

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               A  +   Y+++ +    +DF DL++   +L +       I +K+ Q    I +DE 
Sbjct: 173 LREDAALVYQRYQQSLRAQGAVDFNDLLLLAIELFENHPE---ILHKVQQRARFIHVDEY 229

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q+ + R L  +             L  VGD  QSIY F  A+   +L   +   
Sbjct: 230 QDTNPVQYRLTRLLAGE----------NPNLMVVGDPDQSIYGFRNADINNILDFTKDYP 279

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      +  L  ++RST+ IL++ + V +        +              G  
Sbjct: 280 --------GAKVYRLEENYRSTSAILSLANAVIAKNALRLEKTLRPV---------KGGG 322

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
             V L+    ++ +                          A  +A  I+ +         
Sbjct: 323 DPVCLFRAPNAREE--------------------------AAFVAREIARL--------- 347

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                     I +L R    + L+    R      +I           +   +KD++A  
Sbjct: 348 -----GNFGQIAILYRTNAQSRLLEEHLR----RAQIPARLVGAVGFFERREVKDILAYA 398

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFAN--CGISKFQ 482
           R  ++  D +S   ++  P        + K +   +       E  ++         +  
Sbjct: 399 RLAVNPLDSISLRRIVNVPTRGIGASTVAKLLEHAQQHGIPALEAFRQAEAILSRPQQVG 458

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQ 541
             ++ + EL   A    P +F   +L A   +         E  +  L+E L      E 
Sbjct: 459 AFVELVDELAEAAFETGPAEFLERVLDATDYKTFIKDEPDAEDRLANLEELLRAARDWEA 518

Query: 542 NSYSSLQELISELEQYPPTIKR----------AHSANHNEVRIMTVHTAKGLESPVVFLV 591
               +L E +  +       +           A      EV +MT+H AKGLE P+VFLV
Sbjct: 519 EFGGTLAEFLDTIALTASIEEPAKRVQDGKLEAPREKAEEVTLMTLHNAKGLEFPIVFLV 578

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  H++                                     +    EE  RL 
Sbjct: 579 GVEENLLPHRNSLN----------------------------------RLEDLEEERRLF 604

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           YVG+TRA ++L +          K         + D    
Sbjct: 605 YVGITRAQERLYLSYAEEREIYGKRESTRPSRFLEDIPEG 644


>gi|238789384|ref|ZP_04633170.1| DNA helicase II [Yersinia frederiksenii ATCC 33641]
 gi|238722527|gb|EEQ14181.1| DNA helicase II [Yersinia frederiksenii ATCC 33641]
          Length = 720

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/700 (17%), Positives = 223/700 (31%), Gaps = 144/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D  ++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I     +   +IL+DE QDT+ IQ+  IR L  +             +  VGD+ 
Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGE----------RSNVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + + R  +               I L  ++RST++ILT  + + +  + 
Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILTAANALIAHNDG 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RMGKN---------------------LW-------TEGAEGEPISLYCAFNELDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR +   I                     D  +L R    + ++            + 
Sbjct: 330 --ARFVVNRIKAWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD +A  R I ++ DD +F  ++ +P     +  +  +    R  
Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDR 433

Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +        A    S  Q  I+ +  L H       H     ++        
Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFIELVDSLSHETADMPLHVQTDRVIRDSGLWSM 493

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G +    I+ L+E +N T +   Q+    L  L + L        +    A  + 
Sbjct: 494 YEQEKGEKGQARIENLEELVNATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        EE  RL YVG+TRA  +L +C   +  
Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619


>gi|148554134|ref|YP_001261716.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1]
 gi|148499324|gb|ABQ67578.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1]
          Length = 892

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 116/770 (15%), Positives = 219/770 (28%), Gaps = 131/770 (17%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF----SLLSSF- 72
           +  WP     V+  NK      E     + +  + +        +  R     + L    
Sbjct: 189 RRAWPSEILAVTFTNKAAREMRERVGRLLGQAVEGMPWLGTFHSVAARMLRRHAELVGLT 248

Query: 73  ----FLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                L      +  K ++      +      +L    D +             ++   +
Sbjct: 249 PSFTILDTDDQLRLLKQLLAAADLDEKRWPARQLAGLIDRWKNRGLTPAEIDAGEAEQFA 308

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 L   Y++  +     DF DL+++   +LK       +     Q   ++++DE Q
Sbjct: 309 NGRGGELYQQYQDRLRAVNACDFGDLLLHMLTILKTH---RDVLADYQQRFRYVMVDEYQ 365

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+  +R + ++           + +  VGD+ QSIYS+ GAE   +LR +R    
Sbjct: 366 DTNSSQYLWLRLIAQE----------RKNICCVGDDDQSIYSWRGAEVANILRFERDFP- 414

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    ++I L  ++RST  IL     + +      G +                  
Sbjct: 415 -------GAAVIRLEQNYRSTPHILAAASGLIAHNGGRLGKT------------------ 449

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW       + +       W    +           ARR+   I             
Sbjct: 450 ---LW---TEAAEGEKVRIVGVWDGPEE-----------ARRVGDEIEAHERGGGKLD-- 490

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   D+ +LVR +  T               +       F   +   I+D +A  R
Sbjct: 491 --------DVAILVRAQFQTREFEDRFIA----IGMPYRIVGGFRFYERAEIRDALAYLR 538

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGIS 479
            I    DDL+F  ++ +P     +  + K+    R E   +           +       
Sbjct: 539 TISQPADDLAFERIVNTPKRGLGDKAVAKLHQLARAEGIPLALAAARILGTDELTPQARR 598

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
              +++  I     +    S  +    +L          +    E    L+         
Sbjct: 599 ALGNLVGDIARWRDMLSQLSHPELTRQVLEESGYVAMLQNEKSTEAEGRLENLNELARAM 658

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +     A   +V +MT+H AKGLE   VFL      VF 
Sbjct: 659 E-----DYATLGDFLEHVSLVMDNDAEAETAKVTVMTIHAAKGLEFDTVFLPGWEEGVFP 713

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +       +                                ++ EE  RL YV +TRA 
Sbjct: 714 SQRSLDEGGL--------------------------------ASLEEERRLGYVAITRAR 741

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +  I   +N     +     W   +   F  +   + ++   +++  E   +       
Sbjct: 742 RRCTIIHAAN-----RRIYGQWTSSIPSRFVAELPDQHVEAETTMSGGE-SLWRAQWSEH 795

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
            +       +  +    Q+             +       S +       
Sbjct: 796 ADPFAHVGRSQGRGPGWQRATAAGGLGSPQAGSRVVEARASAVSFAQPPR 845


>gi|73540567|ref|YP_295087.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134]
 gi|72117980|gb|AAZ60243.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134]
          Length = 786

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 111/723 (15%), Positives = 230/723 (31%), Gaps = 154/723 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F++L S     + +  K ++ + +N          K  Q      ++
Sbjct: 96  LRAHFRDAGLPQTFAILDS---QDQLSALKRLL-KALNVDDEKYPA--KNLQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +       ++          L A Y++  ++  V+DF +L++   +LL+  D    IR  
Sbjct: 150 QGLRPADVEANDDFNRRFVDLYAAYDQQCQREGVVDFAELLLRCYELLRYNDA---IRQH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                +H+L+DE QDT+++Q++ ++ L            +P  +FAVGD+ QSIY+F GA
Sbjct: 207 YQHRFSHVLVDEFQDTNVLQYQWLKLLAGHGT------QNPAAVFAVGDDDQSIYAFRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R         +I+L  ++RS   IL   + + S      G +  + 
Sbjct: 261 NVGNMRDFEHEFRVR--------KLIKLEQNYRSHGHILDSANHLISHNSRRLGKNLRTD 312

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V++++      +                          A  +   
Sbjct: 313 ---------AGHGEPVRVFQAGSDGQE--------------------------ASWLVEE 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I + I             +   +I +L R    + +I            I+         
Sbjct: 338 IRDQIAQG----------MSRSEIAILYRSNAQSRVIEHAL----FSAGIAYRVYGGLRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471
            +   IK  +A  + + +  +D +F  ++  P        + ++    R    ++ E + 
Sbjct: 384 FERAEIKHALAYLQLLENPRNDAAFGRVVNFPARGIGARSLEQLQDAARQYNCSLAEAVA 443

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLD 530
                  SK    ++ I ++    +  +  +    +  A      +     G + I+ L 
Sbjct: 444 YVPGAAGSKLAAFVRLIEQMRAETRRMTLAEVVEHVTNASGLITHYRGEKEGQDRIENLQ 503

Query: 531 EFLNFTLRNEQNSYSSLQELIS-------------------------------------- 552
           E +             L+ L +                                      
Sbjct: 504 ELVTAAQAFVVEEGYGLEALAAVIPVGFESRAVQAVQQLAEGDQAQQVLDPEALPVVMTP 563

Query: 553 ---ELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
               L             A  + V++MTVH AKGLE  VVF+      +F H++      
Sbjct: 564 LVAFLTHASLEAGDNQAQAGQDAVQMMTVHAAKGLEFNVVFITGLEEGLFPHENS----- 618

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                         +++   EE  RL+YV +TRA ++L +    
Sbjct: 619 -----------------------------AMEQDGLEEERRLMYVAITRARERLYLS--- 646

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
             +  +  + +  Y +    F          LT        +  +   +        + E
Sbjct: 647 -FAQSRVLHGQMRYHVRSRFFEELPEEALKWLTPQQQSYGGVRRQERDNAWGRDWFRKPE 705

Query: 729 TIK 731
            + 
Sbjct: 706 DVP 708


>gi|30064162|ref|NP_838333.1| exonuclease V subunit beta [Shigella flexneri 2a str. 2457T]
 gi|56480189|ref|NP_708611.2| exonuclease V subunit beta [Shigella flexneri 2a str. 301]
 gi|30042418|gb|AAP18143.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Shigella flexneri 2a str. 2457T]
 gi|56383740|gb|AAN44318.2| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Shigella flexneri 2a str. 301]
 gi|281602176|gb|ADA75160.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Shigella flexneri 2002017]
 gi|313647883|gb|EFS12329.1| exodeoxyribonuclease V, beta subunit [Shigella flexneri 2a str.
            2457T]
          Length = 1180

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 273/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLLITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                 E     ++                 +      +  P  + W    +S       S
Sbjct: 467  TFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|261377453|ref|ZP_05982026.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685]
 gi|269146180|gb|EEZ72598.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685]
          Length = 671

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/576 (18%), Positives = 189/576 (32%), Gaps = 118/576 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A Y+E  +    +DF+DLI     LL++    + +R K  + + ++L+DE QDT+
Sbjct: 162 TARVYASYQETLQSYQAVDFDDLIRLPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTN 218

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +++ LT           +     AVGD+ QSIY++ GA  + + + +    +   
Sbjct: 219 TCQFTLMKLLTG----------AEGMFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--- 265

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RSTA IL + +KV                                
Sbjct: 266 -----MKVIKLEQNYRSTARILKIANKVIENNPKLFTKK--------------------- 299

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI--SNMIGTDTIFSNGK 367
           LW Q+      +                   +    A  +   I    +IG D       
Sbjct: 300 LWSQLGEGEPVKVV--------------ACQNEQHEADWVVSQIVKQKLIGGDKT----- 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q  D  VL R +    +     R      +I    +      D   IKD+++  R 
Sbjct: 341 ----QYADFAVLYRGKHQARIFEEALR----GARIPYRLSGGQSFFDKAEIKDVLSYVRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISK 480
           + +  DD +F+  + +P     +  + K+         ++YE  Q         N     
Sbjct: 393 LANPNDDPAFLRAVTTPKRGIGDVTLGKLNTYAHEHECSLYEAAQTEEALATLNNTNRQH 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF----GNEVIDVLDEFLNFT 536
            Q  +         A+     +    +L         ++      G      + + +++ 
Sbjct: 453 LQAFMDMFGSYRAKAETSEAGELINSLLKEIDYENHLLASEEGKAGEIKWRNVGDLVSWF 512

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            R       ++ EL   +        +      + V + T+H AKGLE P VFLV     
Sbjct: 513 ARKGGEDGKNVIELAQTVALMTLLEGKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEG 571

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           V  H                                      +++   EE  RL+YVG+T
Sbjct: 572 VLPHN-----------------------------------DSIEEGNVEEERRLMYVGIT 596

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           RA  QL +        +           + +    D
Sbjct: 597 RAKRQLTLTHCVKRKKQGTWQFPEPSRFIDEMPQED 632


>gi|90407425|ref|ZP_01215609.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3]
 gi|90311456|gb|EAS39557.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3]
          Length = 1196

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 143/927 (15%), Positives = 300/927 (32%), Gaps = 125/927 (13%)

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              ++   S  LT     QK    +++++K+P         +       +   + ++    
Sbjct: 271  SAWASKPSSSLTLPKNLQK-FSQKDLDEKTPKGAP----PKHAVFSAIEAIYSAELSLEN 325

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               +    ++ AH  + K+   VL F+DL++  +  L+K  V   +  +I       +ID
Sbjct: 326  TILIKATHWVRAHLNKNKQSQSVLGFDDLLVRLDSALQKS-VDNQLAVQIRNTYPIAMID 384

Query: 184  EVQDTSLIQWEVIRSLTE-DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            E QDT  +Q+ + +++ + +    K        LF +GD KQ+IYSF GA+    ++ ++
Sbjct: 385  EFQDTDPVQYRIFQTIYKLEADAEKEGLEKSAGLFMIGDPKQAIYSFRGADIFTYMQARQ 444

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                  +          L  ++RS+A ++  V+  FS               I     ++
Sbjct: 445  NVSAHYS----------LDFNYRSSAQMIDAVNTFFSHCPAPF----IYDNDIPFVPIKV 490

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              +   +L    V  +     P    +         ++    +       I N++     
Sbjct: 491  PDITRKRL----VIDNADDIAPSALQFFHLQGGENADAFKLSMTDACVNEIKNILLLGQQ 546

Query: 363  F------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                     G K+ I+A DI +LVR  K+  LI    R L ++   SV  + +  +    
Sbjct: 547  GKAYLEDEKGNKQAIKADDIAILVRTGKEASLIR---RALLDENINSVYLSLKESVYATS 603

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
               DL+ + +  L+ ED+      L   LF  +   IF+   Q  +  +  E I +F N 
Sbjct: 604  LGTDLLFILKACLNPEDERQLRNALGCKLFALTPYQIFE---QLSDGPSWEEKIGQFFN- 659

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                +Q +      L+ + +          +L   +G +             L E L   
Sbjct: 660  ----YQALWDKSGVLVMLHKLFHEQGITDHLLSLDQGERLLTDLL------HLTELLQKN 709

Query: 537  LRNEQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                   ++ L+    ++          K+   +  + V++ T+H +KGL+  +VF+  T
Sbjct: 710  SAEHDGGFALLRWFSEQVSVEKSQNNEQKQRLESEKDLVQVSTLHKSKGLQYNIVFMPFT 769

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            G        +                          N     +   +K    E  RLLYV
Sbjct: 770  GLYQKPRDCLFHDPTHQHQL------------YYDLNKDKAHVALTEKEQLAEDLRLLYV 817

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE----- 708
            G+TR+  +  +   S  S   K++  T   + Y      + +            +     
Sbjct: 818  GLTRSIQRCYLGIASYKSGRLKNSPLTKSALGYICLQTGKDLLAGDAQALNVHLDKMCLS 877

Query: 709  -----------WIAYEWSTHHPENTPLEREETIKQLMDEQKIPK-----KLFSPIKNDIN 752
                            ++    +N          ++     I       +L +       
Sbjct: 878  SSHISVRSAATHNELIYAAQVQQNELQAPPVFSARIERNWWISSYSSLSRLHTATTQVKT 937

Query: 753  EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH--KRKNFITSYCT 810
            E   +    I+      + +  +  +    G  +H L ++I        + +  + +  +
Sbjct: 938  ETSEVAILPIEALSDETVLTPFNFPRGAKHGTFLHLLFELIDFQGRDKLQLERLLETQLS 997

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCDSYSEVSV-------------- 851
             +             L   ++L +P+     +   +      E+                
Sbjct: 998  AHLYDDAPLWAPVFSLWFEQMLNHPLTPQISLKQLLPASKKLEMQFFLSMKTLYSAQVEK 1057

Query: 852  -----------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ--------- 891
                       +G +N       + G ID    +    +I +YK+++             
Sbjct: 1058 LIQTYDALSARAGPLNFKAVQGYLKGFIDLTFEAHGKYYIVDYKSNYLGDSLSDYSSANI 1117

Query: 892  EIEHIPYTHIAQLSIYEKILKDSYPNK 918
                I + +  Q  +Y   L     ++
Sbjct: 1118 HNAMIEHRYDFQYQLYTLALHRLLRSR 1144


>gi|238756289|ref|ZP_04617604.1| DNA helicase II [Yersinia ruckeri ATCC 29473]
 gi|238705495|gb|EEP97897.1| DNA helicase II [Yersinia ruckeri ATCC 29473]
          Length = 720

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/694 (17%), Positives = 221/694 (31%), Gaps = 132/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    + + +   LK  +K    +  +   R         
Sbjct: 90  FHGLAHRLLRAHHLDANLPQDFQILDSDDQHRLLKRIVKALNLDEKQWPPRQAMWYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +             +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 150 KDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---I 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   +IL+DE QDT+ IQ+  IR L  +             +  VGD+ QSIY +
Sbjct: 207 LNHYRERFTNILVDEFQDTNSIQYAWIRLLAGE----------RSNVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R  +               I L  ++RST+ IL   + + +  +   G + 
Sbjct: 257 RGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSTILKAANTLIANNDGRMGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +       AR +
Sbjct: 308 --------------------LW-------TEGAEGEPISIYCAFNELDE-------ARFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     D  +L R    + ++            +       
Sbjct: 334 VNRIKAWQDHGGAL----------NDCAILYRSNAQSRVLEEAL----LQTSMPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD +A  R I ++ DD +F  ++ +P     +  +  +    R    T+++
Sbjct: 380 QRFFERQEIKDSLAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRHTARDRQFTLWQ 439

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             ++       A    S  Q  ++ +  L H       H     ++        +    G
Sbjct: 440 ATRELLQSQVLAGRAASALQRFVELVDSLAHETADMPLHVQTDRVIRDSGLWIMYEQEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    I+ L+E +N T +   Q+    L  L + L        +    A  + V++MT+
Sbjct: 500 EKGQARIENLEELVNATRQYSYQDEDEDLMPLQAFLSHAALEAGEGQADAYQDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                  EE  RL YVG+TRA  +L +C   +  
Sbjct: 591 -----RLEEERRLAYVGLTRAMQKLTLCYAESRR 619


>gi|238763616|ref|ZP_04624576.1| DNA helicase II [Yersinia kristensenii ATCC 33638]
 gi|238698094|gb|EEP90851.1| DNA helicase II [Yersinia kristensenii ATCC 33638]
          Length = 672

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/700 (17%), Positives = 222/700 (31%), Gaps = 144/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D  ++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINGKKDEGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I     +   +IL+DE QDT+ IQ+  IR L  +             +  VGD+ 
Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGE----------RSNVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + + R  +               I L  ++RST++ILT  + + +  + 
Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILTAANALIANNDG 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RMGKN---------------------LW-------TEGVEGEPISLYCAFNELDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR +   I                     D  +L R    + ++              
Sbjct: 330 --ARFVVNRIRAWRDNGGAL----------NDCAILYRSNAQSRVLEEALLQTAT----P 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD +A  R I ++ DD +F  ++ +P     +  +  I    R  
Sbjct: 374 YRIYGGQRFFERQEIKDALAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVIRQTARDR 433

Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +        A    S  Q  ++ +  L H       H     ++        
Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLAHETADMPLHVQTDRVMRDSGLWSM 493

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G +    I+ L+E +N T +   Q+    L  L + L        +    A  + 
Sbjct: 494 YEQEKGEKGQARIENLEELVNATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDESG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        EE  RL YVG+TRA  +L +C   +  
Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619


>gi|91762855|ref|ZP_01264820.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718657|gb|EAS85307.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002]
          Length = 678

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/550 (19%), Positives = 185/550 (33%), Gaps = 122/550 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              + L   Y++        DF DLI++   +L+K      IR        +IL+DE QD
Sbjct: 170 RTIRPLYKIYQQKLLDLNACDFGDLILHVVKILEKN---QDIRNIYSNNFKYILVDEYQD 226

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ   +  L+E            + L  VGD+ QSIYS+ GAE K  L   ++ +  
Sbjct: 227 TNYIQSRWLNLLSE----------KHKNLCCVGDDDQSIYSWRGAEIKNFLEFDQVYKNS 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RS+ +IL+V   + +  +N  G +  +T           +   
Sbjct: 277 --------KVIRLEENYRSSQNILSVASNLIANNQNRVGKTLKTTM---------EEGDL 319

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V+L      + +                          A  ++  I   +          
Sbjct: 320 VKLNCFKNGKDE--------------------------AIGVSDEIEKKLK--------- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +     +I +LVR    T               +           +   IKD +A  R 
Sbjct: 345 -KKYSFNNIAILVRAIFQTREFEERF----LKIGLPYRILGGTKFYERAEIKDCVAYLRL 399

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------ 480
           I   +DDL+F  ++ +P     E  I  I    +    ++    +K     + K      
Sbjct: 400 IHQPKDDLAFDRIVNNPKRAIGESTIKLIHEFSKTNAVSLEIASKKLIEENLIKPKTKIG 459

Query: 481 FQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
               +  + +  +    +  +      L+L          ++   E    ++ + E L+ 
Sbjct: 460 LSSFLFLMDKWRNDINIKKINHVKLLQLVLDESGYSSMLKNKKDLENENRLENIKELLSA 519

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +         L + LE            +  +V +MT+H +KGLE  VVFL     
Sbjct: 520 MKDFDN--------LENFLEHVALATSVDQDWDGEKVNMMTMHGSKGLEFDVVFLPGWEE 571

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F H+                                  I+   ++  EE  RL YVG+
Sbjct: 572 GLFPHQKS--------------------------------IEEKGQNGLEEERRLAYVGI 599

Query: 656 TRASDQLIIC 665
           TRA  + +I 
Sbjct: 600 TRAKKKALIS 609


>gi|227357275|ref|ZP_03841632.1| exodeoxyribonuclease V beta chain [Proteus mirabilis ATCC 29906]
 gi|227162538|gb|EEI47527.1| exodeoxyribonuclease V beta chain [Proteus mirabilis ATCC 29906]
          Length = 1212

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 146/1028 (14%), Positives = 313/1028 (30%), Gaps = 173/1028 (16%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLSSFFLT 75
             K LW     +++D      +   + +   L K    +   +     +           +
Sbjct: 238  VKALWRHHCNEIADWITSSGVDKRSYSSRFLPKWIDEITAWATPLETKSYQLPDCLSRFS 297

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            Q    +K   T +       L  +++    + + +RD      + +           +  
Sbjct: 298  QATLHEK---TTKGAAPEHALFAEIELLCQQSLTLRDVIIANAIPE-----------IRQ 343

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
              E  K +   L F+DL+   +  L++ +    +   I Q     +IDE QDT   Q+ +
Sbjct: 344  GIENEKMRRGELGFDDLLTRLDKALQR-EGGEALADAIRQRYPVAMIDEFQDTDPQQYRI 402

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
              ++  +             L  +GD KQ+IY+F GA+    +R ++          Q  
Sbjct: 403  FDTIYGEHTESG--------LLFIGDPKQAIYAFRGADIFTYIRARQ----------QTD 444

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
                L  ++RS   +++ V+K+F   +            +           + +  + + 
Sbjct: 445  HHYTLNTNWRSAPGMVSAVNKLFLRSKTPFLFDHIPFIEVN----------SAEKNQHMK 494

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKKRV 370
              +  +       W +  +SL   +   ++A + A  I + +         +     KR 
Sbjct: 495  FIYQQKTVAPLNFWLAEGESLSTGNYEQLMASQCAMQIRDWLSAGDNQQAWLIEQDNKRA 554

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + + DI+VLVR R++  LI      L      SV  ++R  + +    KDL+ L + +++
Sbjct: 555  VTSADIVVLVRSRREALLIRDALDLLSIQ---SVFLSNRESVFETNEAKDLLWLLQAVVT 611

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             E +      L S LF F+   I ++           E    +      +          
Sbjct: 612  PEKERVLRASLASALFGFNAQQIDELNQDEQRWNRYVEQFADYFVLWQKR--------GV 663

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL---NFTLRNEQNSYSSL 547
            L  + +    +     +L ++ G ++            + E L   +  L +E      L
Sbjct: 664  LPMLRKVMIENQIAENLLASQAGERRLTDIM------HIGELLQETSLQLDSEHALIRWL 717

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             + IS  +    + +    ++ N V+I T+H +KGLE P+V L    +     +    ++
Sbjct: 718  AQQISRPDAQAESQQMRLESDKNLVQICTIHKSKGLEYPIVCLPFACNY---QEQKGALY 774

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-- 665
                           P S           +   +    E  RLLYV +TRA     +   
Sbjct: 775  HDRDEFYAKLDIFNQPDSV----------RLADEERLAEDLRLLYVALTRAKFCCYVGVA 824

Query: 666  ----KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE-----WST 716
                 +   S     ++     ++      +  +    +   ++ +  +           
Sbjct: 825  PLVKGNKRKSGLTDLHKNALGYLLQHGEEGNSELLHQSINQLLDDNIKVITLGDTSTHRY 884

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST--------------- 761
              P  T +  +  I +           +S +    +    L  S                
Sbjct: 885  QSPHTTNIALDAAIFKRKINDNWRITSYSGLTAQHSARGYLFDSADLDALVQSIAPGLDT 944

Query: 762  ----IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                  T   ++  S+    +    G  +H LL+ +                 +    + 
Sbjct: 945  DAKGEKTAQHSDELSIHHFPRGAVAGTFLHSLLEELDFSQPIDESWMQEQLIAQ---GFE 1001

Query: 818  AKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKIN--------------- 856
             K    L+  +  L   P+      +          E+     I                
Sbjct: 1002 EKWTPLLVAWMETLFHTPLNAQGLCLADIPKEHQLDELQFYLPIEKEMSAAQLTALTRQY 1061

Query: 857  -----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY------- 898
                         +   ++ G ID +   +   ++ +YK++       ++          
Sbjct: 1062 DPLSAQCPALNFQQVQGMLKGFIDLVFCWEGKYYVVDYKSNWLGESSEDYTQEAMSNAMR 1121

Query: 899  --THIAQLSIYEKI----LKDSYPNKSLV------CLLI-------YVSEPKVFIIPQNK 939
               +  Q  +Y       L+   P+          C L        Y        +P+ K
Sbjct: 1122 DHRYDLQYQLYTLALHRFLQQRLPDYDYQRHFGGICYLFLRGIDADYPGNGVYTYLPEEK 1181

Query: 940  LNKAFAEI 947
              +A   +
Sbjct: 1182 FVEALDAL 1189


>gi|215488138|ref|YP_002330569.1| exonuclease V subunit beta [Escherichia coli O127:H6 str. E2348/69]
 gi|215266210|emb|CAS10637.1| exonuclease V (RecBCD complex), beta subunit RecB [Escherichia coli
            O127:H6 str. E2348/69]
          Length = 1180

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 131/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  ++     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIEQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEAQDAAGLRTCIEALCDDDIAWQTAQI 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          +  +    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L  P+      ++     D   E+     I+ P                   
Sbjct: 990  LTEWITTVLLAPLNETGISLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|307718485|ref|YP_003874017.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM
           6192]
 gi|306532210|gb|ADN01744.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM
           6192]
          Length = 665

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/597 (17%), Positives = 189/597 (31%), Gaps = 118/597 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y    +    +DF+DLI+    L +       +     +   +ILIDE QD
Sbjct: 159 EVYRPVYEEYHAHLRAYHAVDFDDLIVLPIGLFETHPE---VLASYRERFRYILIDEFQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS++Q+  I+ L E+           R L  VGD+ QSIYS+ GA  +     +R   +R
Sbjct: 216 TSILQYRFIKLLAEE----------HRNLCVVGDDDQSIYSWRGANYENFALFERDFPER 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     ++L  ++RS   IL   +++ S   N +                 G+ G 
Sbjct: 266 --------KEVKLEQNYRSVQTILEAANQLISHNTNRKEKRL-----------WSGRPGK 306

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             ++    S    +                        A  IA TI  ++  +       
Sbjct: 307 TSIYLTFPSNEREE------------------------AEYIAETIRTVVLKE------- 335

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   +I VLVR       I          + I    +      +   IKD++A  R 
Sbjct: 336 --GIPYHEIGVLVRTNSLMAPIEDAF----LRHNIPYKLSGGTSFFERKEIKDIIAYLRV 389

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480
           IL+ +DD+S + ++ +P        +  +         ++Y  +                
Sbjct: 390 ILNPDDDVSLLRIINTPRRGIGRQTLHILGEYATEHELSIYSALTSLLYAQGLPPQVART 449

Query: 481 FQHVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNE------VIDVLDEFL 533
           F   +  I E         S  +    ++      +  +    +           L  F 
Sbjct: 450 FDEFVSLIEEFGERITGRTSIAETVRDLVDRIDYFEYLMQEHRDNEKVARYRYQNLMLFS 509

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLV 591
           +   R E +  +    L + L +     K          +V +MT+H AKGLE   VFL 
Sbjct: 510 DLIERWENDPDNLNPNLGAYLTRISLITKDELDEEDTKGKVNLMTIHAAKGLEFAHVFLA 569

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  H                                        ++  EE  RL 
Sbjct: 570 GVEEGIIPHARAL---------------------------------EDSETNIEEERRLF 596

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           YV +TRA + L +         ++  ++T    + +   +    +      +    E
Sbjct: 597 YVAITRAREALYLTSCRQRRVMREDQEQTPSPFLEELPDHLIETEAPPSDLTEEDVE 653


>gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp.
           Marseille]
 gi|151281327|gb|ABR89737.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp.
           Marseille]
          Length = 760

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 208/660 (31%), Gaps = 148/660 (22%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +         +D+       ++          L   Y++  ++  V+DF +L++ T +LL
Sbjct: 138 RNLMYFINGAKDQGLRASAVEAFDDYNRKMVELYEIYDQQCQREGVVDFAELLLRTYELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +      +R        HIL+DE QDT+ +Q+  ++ +            +   +FAVG
Sbjct: 198 SRN---QPLREHYQSRFRHILVDEFQDTNDLQYNWLKLMAG----------TQGAVFAVG 244

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   +R  +          ++I+L  ++RS   IL   + + + 
Sbjct: 245 DDDQSIYAFRGANVGNMSAFEREFKVE--------NLIKLEQNYRSHGHILDTANTLIAN 296

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +  +           G    V+++                          + +
Sbjct: 297 NSKRLGKNLHTD---------AGHGELVRIY--------------------------EAT 321

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           S    A+ I     ++I                 DI VL R    + +I           
Sbjct: 322 SDLQEAQWIIEEAKSLIAEGAA----------RSDIAVLYRSNAQSRVIEHAL----FSS 367

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I           +   +K  +A  + + +  +D +F+ ++  P        + ++    
Sbjct: 368 GIPYRVYGGQRFFERAEVKHAIAYLQLMDNPHNDSAFLRVVNFPTRGIGARSLEQLQDAA 427

Query: 461 HE-TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
            +   ++Y  +   A    +     IK I       Q     +   +++ A      + +
Sbjct: 428 KQYGISLYAAVPYVAGKAGTSLGAFIKLIEAARFETQNLPLPEMVQVVIDASGLITHYQN 487

Query: 520 RF-GNEVIDVLDEFLNFTLRNEQNSYSS-------------------------------- 546
              G + I+ L++ ++                                            
Sbjct: 488 EKEGADRIENLEQVVSAATLFVSEEGFGQDAPALLGPTSQQMAGPAIVTQDGVEILDADA 547

Query: 547 -----LQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                +  L + L             A  + +++MTVH+AKGLE   VF+      +F H
Sbjct: 548 PLPVVMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGLEEGLFPH 607

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           ++                                     ++   EE  RL+YV +TRA  
Sbjct: 608 ENS----------------------------------QKEEDGVEEERRLMYVAITRAKR 633

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L I      S  +  + +  +++    F          L+  + +  W A+  +     
Sbjct: 634 RLYIS----FSQTRMLHGQMRFNLKSRFFDEMPEDSLKWLSPKVQQHHWTAHPKAAWEDA 689


>gi|325273939|ref|ZP_08140102.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51]
 gi|324100910|gb|EGB98593.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51]
          Length = 728

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 118/721 (16%), Positives = 227/721 (31%), Gaps = 132/721 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   Q S  +             + ++ + L   +        
Sbjct: 33  GAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGMWVGT 92

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--K 109
           F              + L   F       Q+ +I + + +   D ++   +    FI  +
Sbjct: 93  FHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKRVMRELGLDEQKWPARQAQWFINGQ 152

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +      +       L   + +   YE+A ++  V+DF +L++   DL +       +
Sbjct: 153 KDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAGVIDFSELLLRALDLWRDHPG---L 209

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   H+L+DE QDT+ +Q+  +R L               +L AVGD+ QSIY +
Sbjct: 210 LEHYQRRFQHVLVDEFQDTNAVQYAWLRLLAR----------GGASLMAVGDDDQSIYGW 259

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                 +I L  ++RST  IL   + + +      G   
Sbjct: 260 RGAKIENIHQYTADFP--------DAEMIRLEQNYRSTGGILKAANALIANNSGRLGK-- 309

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW             +  +  + ++   +       AR +
Sbjct: 310 -------------------ELW-------TDLGEGEPLTLYAAYNEHDE-------ARYV 336

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
             TI  +I                 DI +L R    + ++           ++       
Sbjct: 337 VETIEGLIKQGNA----------RNDIAILYRSNAQSRVLEEAL----LRERVPYRIYGG 382

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IK+ MA  R I  + +D +   ++  P     E  +  I    RH   +++ 
Sbjct: 383 QRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEAIREHARHSQLSMWG 442

Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFIS 519
            + +       K          I+ I  L         H      +         Q+   
Sbjct: 443 AMCQLIAAKALKGRAASALGAFIELIEGLAAKVADMPLHTMTQTTIEQSGLITYHQEEKG 502

Query: 520 RFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
             G   ++ L+E ++     E     + L  L + L              + + +++MT+
Sbjct: 503 EKGQARVENLEELVSAARNFESTEEDADLSPLSAFLGHASLEAGDSQADEHEDSIQLMTL 562

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VFLV     +F HK   +                                
Sbjct: 563 HSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG----------------------------- 593

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA  QL++                    V +      +  +
Sbjct: 594 -----RLEEERRLAYVGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPPGLVQEVR 648

Query: 698 I 698
           +
Sbjct: 649 L 649


>gi|238784730|ref|ZP_04628733.1| DNA helicase II [Yersinia bercovieri ATCC 43970]
 gi|238714326|gb|EEQ06335.1| DNA helicase II [Yersinia bercovieri ATCC 43970]
          Length = 720

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/582 (18%), Positives = 195/582 (33%), Gaps = 116/582 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRLLAGD----------RANVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST++ILT  + + +  +   G +                     LW
Sbjct: 273 --GAETIRLEQNYRSTSNILTAANALIAHNDGRMGKN---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S    F+ L +       AR +   I                  
Sbjct: 310 -------TEGAEGEPISIYCAFNELDE-------ARFVVNRIRAWQDNGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R + ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGGQRFFERQEIKDALAYLRLVSNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++  +        A    S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQSTRSMLQEKVLAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
           ++ +  L H       H     ++        +    G +    ++ L+E +N T +   
Sbjct: 462 VELVDSLAHETADMPLHVQTDRVIRDSGLWSMYEQEKGEKGQARVENLEELVNATRQYSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +    A  + V++MT+H+AKGLE P VF+V     +F 
Sbjct: 522 QDEDQDLMPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGVTRAM 607

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            +L +C   N     K         + +         +++ T
Sbjct: 608 QKLTLCYAENRRLYGKEVNHRPSRFIGELPPECVEEVRLRAT 649


>gi|320536129|ref|ZP_08036182.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis
           F0421]
 gi|320147046|gb|EFW38609.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis
           F0421]
          Length = 664

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/598 (15%), Positives = 175/598 (29%), Gaps = 122/598 (20%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
               + L   Y+++ K    +DF+DLI+    L  +      I  +      +I++DE Q
Sbjct: 156 HDAYRLLYQEYQDSLKIYNAVDFDDLIMLPIQLFTEHPE---ILAEYKNRYRYIMVDEFQ 212

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DTS+ Q+  ++ + E+             +  VGD+ QSIYS+ GA  + +   ++   +
Sbjct: 213 DTSIQQYNFMKLIAEN------------NVCVVGDDDQSIYSWRGANFENIRMFEKDFPQ 260

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I+L  ++RST  IL   + V +   N +  +  S               
Sbjct: 261 LVE--------IKLEQNYRSTGTILAAANGVIAHNTNRKEKALWSGN---------DSGK 303

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++++                               ++ A  IA  I          +  
Sbjct: 304 PIEIFIPET--------------------------ETVEADFIADMI---------LTEK 328

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            +      D  VL+R    +  I         +  I    +          IKD+++  R
Sbjct: 329 ARENRSFSDFGVLIRANSLSRAIEESF----LNANIPYKMSGGTSFFQRKEIKDVISYLR 384

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------- 479
            + + +DD++ + ++ +P     +  +  I     E +                      
Sbjct: 385 VVANPDDDINLLRIINTPRRGIGKRTVEIISHIATEQKCSIRAAINNLLANSEGGSIKDK 444

Query: 480 ---KFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNEVID------VL 529
                Q     I     +             ++         I  +             +
Sbjct: 445 GLADVQSFADLISRHRKLLLSGKGLAQKVRKLVEEINYFDYLIQEYQKNEKAARYKFLNI 504

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVV 588
           +  +      E N  +    L   L +     +      +  EV+IMT+H AKGLE PVV
Sbjct: 505 ERLIQSIEEWEHNPDNFDVNLYDYLNRITLLTRDDMNEEDKGEVQIMTIHAAKGLEFPVV 564

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F+  T   +  H                                            EE  
Sbjct: 565 FIAGTEEGIIPHARSM---------------------------------EENDGDIEEER 591

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           RL YV +TRA  +L I             +      + +   +     +         
Sbjct: 592 RLFYVAITRAQQKLYITSCRTRKKMGTFRECAPSPFLEEIPADLVHYHEPDAQAEAAD 649


>gi|313837606|gb|EFS75320.1| UvrD/REP helicase [Propionibacterium acnes HL037PA2]
 gi|314927513|gb|EFS91344.1| UvrD/REP helicase [Propionibacterium acnes HL044PA1]
 gi|314972545|gb|EFT16642.1| UvrD/REP helicase [Propionibacterium acnes HL037PA3]
          Length = 1071

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 140/999 (14%), Positives = 299/999 (29%), Gaps = 122/999 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         +    +  + +     L KA           I +    L++   +   +
Sbjct: 122  AWDGINTGAHLMTGARAYQLASEVVVGLDKAPLAATHLGPTPIAQAVVKLAAAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKSTLASLTLAKYLNAH 136
            P       E+ K     ++ L  +  +    R         ++ +           L A 
Sbjct: 182  PD------EVRKADARWRQMLLDAPTKKGGGRYADIDTWLSRVDEREEFL-----ELVAA 230

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            Y+E KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+
Sbjct: 231  YQELKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVL 287

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             +L   F    ++H     + AVGD  Q+IY + GA    +L   R    +         
Sbjct: 288  AAL---FSGPDSSHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPDK---EWNPAQ 341

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            ++ L  + R    I+   +            + +            G    V + + +V+
Sbjct: 342  VLSLTTNRRCADQIINAANMASEELRERLSSTMNFDNDAP-----AGDRADVAVGQPLVA 396

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
               ++             ++      +   R  A  +        I            D 
Sbjct: 397  PEGNRPGEV---------TVAAYPDWAEECRACADIVVEAKERGIITH--------WSDA 439

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             +LVR+  D   +        +   + V   +   L     I  ++A  R ++ ++DD +
Sbjct: 440  AILVRRNSDVADLYDAL----STRDVPVRLANLSGLLRLPDIAMVVAHLRLLVDRQDDAA 495

Query: 437  FVCMLKSPLFNFSEDDIFKICTQR----------------HETETVYEYIQKFANCGISK 480
               +L SP      DD+  +  +                      + + + +    G  +
Sbjct: 496  MATLLASPRLGLGTDDLAMVYRRARVLAKTRAQADGLDPDDVEVHLCDAVMERRPGGHER 555

Query: 481  FQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
             QH +  +   I      Q  SP D   LI           +   +      D LD   +
Sbjct: 556  LQHALARVCAEIVDVEAHQGDSPDDLVLLIEAITGLVDDMAADDPHRSAARRDHLDALWD 615

Query: 535  FTLRNEQNSY----SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                  ++      + +   ++  E +   + RA + + + V + TVH AKGLE P+V +
Sbjct: 616  EIREARRSDPTMTTAGIVAWLAAEEDFGDGLARAATDDRDAVTVSTVHGAKGLEWPLVMI 675

Query: 591  VDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             D    VF              ++PS        +  P S S  +  + +    + S   
Sbjct: 676  PDMAQGVFPSTASPDNFTSVAAVLPSFARGDANDVNHPASGSVADAKAYVAALKEDSQWA 735

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN--- 702
            E  RL YV +TRA ++L++  H  +   K   +   Y  +       E     +  N   
Sbjct: 736  EA-RLAYVALTRAKERLVVSWHKWSPYRKAGLEPGRYAGLLADMLGTEWPDFGERPNNDV 794

Query: 703  ------SINKDEWIAYEWSTHHPENTPL-----------EREETIKQLMDEQKIPKKLFS 745
                   +  ++         +                 + +  +K       +   +  
Sbjct: 795  QAGTSWPVIAEDVDHGPIDNVYQSVDDPGQADRVNTWRSDADALLKDARRRIDLEDDVML 854

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
            P +   ++   LN +    + +         ++    G   H+ +               
Sbjct: 855  PPRLTTSQMVRLNANPRAFREELRRPMPRPADRGSGIGTAFHEWVSRRLAPTAPIPLFDA 914

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE---VSVSGKINCPKKDI 862
                      +  +                 +  A     + +   +++           
Sbjct: 915  DEIAELEEDDFAPEVVAAEPGGAEG-HALRSLCQAFEESRWVDATVLAIEKSFVMTIGQT 973

Query: 863  IISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK- 918
            ++ GR+D +     +     + ++KT      +          QLSIY      +     
Sbjct: 974  VVRGRLDAVVADPDHPGDELVIDWKTSRPGSADP--------LQLSIYRLAWAQARGIDL 1025

Query: 919  -SLVCLLIYVSEPKVFI----IPQNKLNKAFAEISTKIP 952
              +  +  +V   K       +  +++       S+  P
Sbjct: 1026 SRVRAVFHHVGANKTISAEPFLDADEVAVMLTTASSGGP 1064


>gi|92118249|ref|YP_577978.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91801143|gb|ABE63518.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis
           X14]
          Length = 833

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/579 (17%), Positives = 175/579 (30%), Gaps = 140/579 (24%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+   K     DF DL++    L ++      +  +       IL+DE QDT++ Q
Sbjct: 204 LYAAYQARLKILNAADFGDLLLENIRLFREHPD---VLRQYQGRFKFILVDEYQDTNVAQ 260

Query: 193 WEVIRSLTE------------------------------DFFVGKNTHSSPRTLFAVGDE 222
           +  +R L++                                       S P+ +  VGD+
Sbjct: 261 YLWLRLLSQAPSQSLPGLTRQSVVSPEDGSPGLDASRRPGDDALTKNISPPKNICCVGDD 320

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GAE   +LR                 +I L  ++RST  IL     + +  E
Sbjct: 321 DQSIYGWRGAEVDNILRFDHDFP--------GAKVIRLERNYRSTGHILAAASHLIAHNE 372

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G +                                  + ++ + T  +DS  +    
Sbjct: 373 GRLGKTL----------------------------RTEDVDGEKVTVTGCWDSEEE---- 400

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR I   I  +               +  +I +LVR              L     +
Sbjct: 401 ---ARGIGEEIEQLQRAGE----------KLNEIAILVRASFQMREFEDRFVTL----GL 443

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRH 461
                      +   I+D +A  R I S  DDL+F  ++  P     +  +  +    R 
Sbjct: 444 PYRVIGGPRFYERAEIRDALAYLRLINSPADDLAFERIVNVPKRGLGDATVQMLHEIARK 503

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
               + E  +      +         + ++          +     +   ++L      +
Sbjct: 504 RQIPLSEAARAVVETDELRPKARGSLRALLDSFDRWRVQRETMPHTELVEIVLDESGYTE 563

Query: 516 QFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
            +      +     + L E +      E         L   LE     + R    + + V
Sbjct: 564 MWQKDRSADAAGRLENLKELVRSMEEFEN--------LQGFLEHISLVMDRDGGPDEDAV 615

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H+AKGLE   VFL      +F H+                               
Sbjct: 616 SVMTLHSAKGLEFDNVFLPGWEEGLFPHQR------------------------------ 645

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    ++  EE  RL +VG+TRA  +  +   +N  
Sbjct: 646 --ALDEQGRAGLEEERRLAHVGLTRARRRAKLYFATNRR 682


>gi|304384333|ref|ZP_07366744.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973]
 gi|304334649|gb|EFM00931.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973]
          Length = 789

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 101/677 (14%), Positives = 191/677 (28%), Gaps = 127/677 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y E  +K+  +DF+DL++ T+ L  + D    +  K       IL+DE QDT+ +Q
Sbjct: 179 IYTTYCERCRKSNAMDFDDLLVYTHQLFNEHDD---VLQKYRDRFRFILVDEYQDTNFVQ 235

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++  L E          + R +  VGD+ QSIY F GA    +L  +           
Sbjct: 236 QSIVTRLAE----------AHRRICVVGDDAQSIYGFRGANIDNILDFQEKF-------- 277

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               + +L  ++RST  I+   + +             S         R  +   + L  
Sbjct: 278 ADAEMFKLEQNYRSTQRIVLAANSLIKHNRRQIPKDIFS---------RNDKGERLTLKP 328

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                 +                          A  +   I  +   D            
Sbjct: 329 AYSDTEE--------------------------AMIVCNDIRRIHRAD---------ACA 353

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    +       R       I               IKD++A  R + + +
Sbjct: 354 YSDFAVLYRTNSQSRSFEEQLR----KQGIPYRIYGGLSFYQRKEIKDVIAYFRLVANPD 409

Query: 433 DDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGIS-------KFQHV 484
           D+ +F  ++  P     +  + K +        + +  ++  A  G         K +  
Sbjct: 410 DEEAFRRIINYPARGIGDTTVGKILSAANAHGVSPWTVVKSPARYGADVRGTTVTKIETF 469

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
              I   +        ++    I+               E     + ++EFL        
Sbjct: 470 RTLIMNFVEAMPQTDAYELGKNIMKDSGITADIFGDTTPEGLSRQENIEEFLGAMQDFVS 529

Query: 540 -----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                 +    S+ + + E+             + + V +MT+H+AKGLE P VF+V   
Sbjct: 530 IRQEEGRGEEVSIADFLQEVALLADLD-SDDGNDSDRVALMTIHSAKGLEFPNVFIVGME 588

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                                     YV 
Sbjct: 589 ENIFPSPRACDSQRELEEERRLL----------------------------------YVA 614

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +TRA  + I+    N     +    T    + +       V+     +   +       +
Sbjct: 615 ITRAERRCILTCARNRFRYGRVEFDTPSRFLREIDPQYMTVESEMSASYGQQRYGRRGGY 674

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-----PSTIDTKGKTN 769
                +N+    +             + +              +     PS   T     
Sbjct: 675 DESRYQNSRPVADRFRADPQPRITAHRPIEPATPPASFRRAPASQPIETPSVGSTFAIAV 734

Query: 770 LESLLSDNQTFNRGLII 786
            E  + +++ F  G I+
Sbjct: 735 QEGDVIEHERFGIGRIL 751


>gi|257468110|ref|ZP_05632206.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185]
 gi|317062395|ref|ZP_07926880.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185]
 gi|313688071|gb|EFS24906.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185]
          Length = 725

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 113/578 (19%), Positives = 201/578 (34%), Gaps = 121/578 (20%)

Query: 107 FIKIRDRFNTYKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             K+++   +   ++ +         +   +   Y    KKN  +DF D++INT  LL+ 
Sbjct: 143 ISKLKEEEVSADDYEKSENKYNMNAVVVAEIYRRYNLTLKKNNGMDFSDILINTAKLLEI 202

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            D    I  K+  +  +I++DE QDT+ IQ+++I  +   +            L  VGDE
Sbjct: 203 PD----ILNKVQDKFRYIMVDEYQDTNNIQYKIINKIAGKY----------GNLCVVGDE 248

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA  + +L  ++              +++L  ++RST+ IL   + V S   
Sbjct: 249 NQSIYGFRGANIQNILDFEKDYPN--------AEVVKLEENYRSTSVILDAANAVISNNS 300

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
           +A+                        LW         +   ++ +     D   + +  
Sbjct: 301 SARDKK---------------------LW-------TKKTTGEKITLLQCNDGRQEVNII 332

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                                  GK +  + +D  +L R    + L           + I
Sbjct: 333 I-----------------EEIIKGKNQGKKYRDFTILYRTNAQSRLFEEGF----LRFNI 371

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH- 461
                          IKD++A    I + +D L+   +L  P     +  + KI      
Sbjct: 372 PYKIFGGMQFYQRAEIKDIVAYLAVINNPKDSLNLSRILNVPKRKIGDKSLEKINEFASV 431

Query: 462 ETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
              T++E + +               +   K + ELI +++     + F  ++ + K   
Sbjct: 432 NGLTLFEALGRANEIDTLTANMKIVLEEFHKMMMELIEMSESEPVSELFDKVIKSIKYFD 491

Query: 516 QFIS--RFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEV 572
              S        I  ++E  N     E+     +L+E +  +     T         + V
Sbjct: 492 YLESNYEDSENRISNIEELRNSITEMEKIIETLTLREYLENISLVSATDN--LEEEKDYV 549

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P VFLV T  +VF  K                               
Sbjct: 550 KLMTIHNSKGLEFPTVFLVGTEDEVFPGK------------------------------- 578

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                  +    EE  RL YV +TRA D+L I   ++ 
Sbjct: 579 ---KADFEPRELEEERRLCYVAITRAEDKLYISYAASR 613


>gi|328907789|gb|EGG27552.1| putative ATP-dependent DNA helicase [Propionibacterium sp. P08]
          Length = 1071

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 140/999 (14%), Positives = 299/999 (29%), Gaps = 122/999 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         +    +  + +     L KA           I +    L++   +   +
Sbjct: 122  AWDGINTGAHLMTGARAYQLASEVVVGLDKAPLAATHLGPTPIAQAVVKLAAAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKSTLASLTLAKYLNAH 136
            P       E+ K     ++ L  +  +    R         ++ +           L A 
Sbjct: 182  PD------EVRKADARWRQMLLDAPTKKGGGRYADIDTWLSRVDEREEFL-----ELVAA 230

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            Y+E KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+
Sbjct: 231  YQELKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVL 287

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             +L   F    ++H     + AVGD  Q+IY + GA    +L   R    +         
Sbjct: 288  AAL---FSGPDSSHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPDK---EWNPAQ 341

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            ++ L  + R    I+   +            + +            G    V + + +V+
Sbjct: 342  VLSLTTNRRCADQIINAANMASEELRERLSSTMNFDNDAP-----AGDRADVAVGQPLVA 396

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
               ++             ++      +   R  A  +        I            D 
Sbjct: 397  PEGNRPGEV---------TVAAYPDWAEECRACADIVVEAKERGIITH--------WSDA 439

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             +LVR+  D   +        +   + V   +   L     I  ++A  R ++ ++DD +
Sbjct: 440  AILVRRNSDVADLYDAL----STRDVPVRLANLSGLLRLPDIAMVVAHLRLLVDRQDDAA 495

Query: 437  FVCMLKSPLFNFSEDDIFKICTQR----------------HETETVYEYIQKFANCGISK 480
               +L SP      DD+  +  +                      + + + +    G  +
Sbjct: 496  MATLLASPRLGLGTDDLAMVYRRARVLAKTRAQADGLDPDDVEVHLCDAVMERRPGGHER 555

Query: 481  FQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
             QH +  +   I      Q  SP D   LI           +   +      D LD   +
Sbjct: 556  LQHALARVCAEIVDVEAHQGDSPDDLVLLIEAITGLVDDMAADDPHRSAARRDHLDALWD 615

Query: 535  FTLRNEQNSY----SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                  ++      + +   ++  E +   + RA + + + V + TVH AKGLE P+V +
Sbjct: 616  EIREARRSDPTMTTAGIVAWLAAEEDFGDGLARAATDDRDAVTVSTVHGAKGLEWPLVMI 675

Query: 591  VDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             D    VF              ++PS        +  P S S  +  + +    + S   
Sbjct: 676  PDMAQGVFPSTAGPDNFTSVAAVLPSFARGDANDVNHPASGSVADAKAYVAALKEDSQWA 735

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN--- 702
            E  RL YV +TRA ++L++  H  +   K   +   Y  +       E     +  N   
Sbjct: 736  EA-RLAYVALTRAKERLVVSWHKWSPYRKAGLEPGRYAGLLADMLGTEWPDFGERPNNDV 794

Query: 703  ------SINKDEWIAYEWSTHHPENTPL-----------EREETIKQLMDEQKIPKKLFS 745
                   +  ++         +                 + +  +K       +   +  
Sbjct: 795  QAGTSWPVIAEDVDHGPIDNVYQSVDDPGQADRVNTWRSDADALLKDARRRIDLEDDVML 854

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
            P +   ++   LN +    + +         ++    G   H+ +               
Sbjct: 855  PPRLTTSQMVRLNANPRAFREELRRPMPRPADRGSGIGTAFHEWVSRRLAPTAPIPLFDA 914

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE---VSVSGKINCPKKDI 862
                      +  +                 +  A     + +   +++           
Sbjct: 915  DEIAELEEDDFAPEVVAAEPGGAEG-HALRSLCQAFEESRWVDATVLAIEKSFVMTIGQT 973

Query: 863  IISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK- 918
            ++ GR+D +     +     + ++KT      +          QLSIY      +     
Sbjct: 974  VVRGRLDAVVADPDHPGDELVIDWKTSRPGSADP--------LQLSIYRLAWAQARGIDL 1025

Query: 919  -SLVCLLIYVSEPKVFI----IPQNKLNKAFAEISTKIP 952
              +  +  +V   K       +  +++       S+  P
Sbjct: 1026 SRVRAVFHHVGANKTISAEPFLDADEVAVMLTTASSGGP 1064


>gi|229593437|ref|YP_002875556.1| DNA-dependent helicase II [Pseudomonas fluorescens SBW25]
 gi|229365303|emb|CAY53652.1| DNA helicase II [Pseudomonas fluorescens SBW25]
          Length = 727

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 115/641 (17%), Positives = 207/641 (32%), Gaps = 124/641 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        LS  F       Q+ ++ + I +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LSQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    L   + +   YE A  +  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYEAACVRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   HIL+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAK----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                  I L  ++RSTA IL   + + +   
Sbjct: 252 DQSIYGWRGAKIENIYQYSEDFP--------DAVTIRLEQNYRSTAGILKAANALIANNT 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW             +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDGGEGEAINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           +   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------LARSDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINIPARGIGEKTVEAIRDHARH 434

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E ++                   ++ I  L         H     ++       
Sbjct: 435 ADVSMWEAMRLLIANKGLTGRAAGALGVFVELIENLAAKCAEMPLHLMTQTVIEQSGLIA 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570
             +      G   ++ L+E ++     E       L  L + L              + +
Sbjct: 495 YHEAEKGEKGQARVENLEELVSAARAFENTEEDEELTPLAAFLGHASLEAGDTQADEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                         EE  RL YVG+TRA   L++       
Sbjct: 593 ------------RLEEERRLAYVGITRAMQNLVMTYAETRR 621


>gi|289753005|ref|ZP_06512383.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054]
 gi|289693592|gb|EFD61021.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054]
          Length = 650

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/634 (15%), Positives = 179/634 (28%), Gaps = 102/634 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +      +              +            + L         ++   
Sbjct: 79  AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + +          +    
Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L        N    P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +     +                      
Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +  +  +         I           +   I+D++A  R 
Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478
           + +  D +S   +L +P     +     +     +      + +   A            
Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 ++   EL          +    +L     R++  +    +    +D L+E ++ 
Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542

Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581
                           +         L   LE+            H    V +MT+HTAK
Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
           GLE PVVF+      +F H          S +  
Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPTELSRSGG 636


>gi|295688867|ref|YP_003592560.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756]
 gi|295430770|gb|ADG09942.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756]
          Length = 806

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 101/604 (16%), Positives = 182/604 (30%), Gaps = 120/604 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y+E  +     DF DL+++   L         +  +  +   ++++DE QDT++ Q
Sbjct: 209 LYRQYQERLRILNACDFGDLLLHNISLFTGHPD---VLDEFQRRFKYVMVDEYQDTNVAQ 265

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R L +            + +  VGD+ QSIY + GAE   +LR +R          
Sbjct: 266 YLWLRLLAQ----------GRQNVCCVGDDDQSIYGWRGAEVDNILRFERDFP------- 308

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RST  IL     + +  +   G +                     LW 
Sbjct: 309 -GAKVVRLERNYRSTEHILAAASGLITTNKGRLGKT---------------------LW- 345

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       ++   +  +D   +        R +A  I                  +
Sbjct: 346 ------TEAKGGEKVKVSGVWDGEAES-------RLVADEIERAKKAGR----------K 382

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              + +LVR              L+    I           +   I+D  A  R I S +
Sbjct: 383 YSQMAILVRASFQMRAFEERFVMLQ----IPYKVVGGPRFFERAEIRDAHAYLRLIQSPD 438

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DDL+F  ++ +P     +  + K+    R E  +  E  +             +   + I
Sbjct: 439 DDLAFERIVNTPKRGIGDTSVQKLLQIARLEGISTVEAARVIIGSDDLPARTRTALSNFI 498

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN 542
           + +     +            +L             G      ++ L E +      +  
Sbjct: 499 RDLDRWRSMVGSVHHQRLLETVLEESGYTDALRLDKGPTSQTRLENLKELVQSMGAFDT- 557

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                  L + LE     +     A  + V IMT+H+AKGLE P+VFL      VF  + 
Sbjct: 558 -------LEAYLEHVSLVMDLDREATGDAVWIMTLHSAKGLEFPLVFLPGWEEGVFPSQR 610

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                            +    +   EE  RL YVG+TRA ++ 
Sbjct: 611 S--------------------------------MDDKGEKGLEEERRLAYVGITRAREEA 638

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            I   +N     +   +     V +                               P  +
Sbjct: 639 RISFVANRQVYGRWTSQLPSRFVDELPIAHVDAASETGYYGGGPGMQSTAASRWDDPGTS 698

Query: 723 PLER 726
             + 
Sbjct: 699 AFQA 702


>gi|291303528|ref|YP_003514806.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM
           44728]
 gi|290572748|gb|ADD45713.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM
           44728]
          Length = 762

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 104/758 (13%), Positives = 221/758 (29%), Gaps = 127/758 (16%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL------LS 70
            + + P     ++  NK  +   +  +  +  +A+ +   +                 L 
Sbjct: 62  VRGVHPGEILAITFTNKAAAEMRDRVSSVVGNRARMMWVLTFHAACMRILRREHERLNLK 121

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF--NTYKMFKSTLASLT 128
           S F        + ++ Q       D +   +       ++++        M         
Sbjct: 122 STFTVYDSDDSRRLMQQVARDMELDKRHTPRGLLASVSRLKNELIDPDAAMAAVETPHHR 181

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
                   Y+E  +    LDF+D+I +T  L +       +  +  +   H+++DE QDT
Sbjct: 182 TVAEAYKRYDERLRAAHALDFDDIIGHTVHLFR---AYPQVAREYRRRFRHVMVDEYQDT 238

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+E++R+L  D    +    S   L  VGD  QSIY+F GA  + +L  +R      
Sbjct: 239 NHAQYELVRALVGDDATDEEVPPSQ--LCVVGDADQSIYAFRGATIRNILEFERDFP--- 293

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  + I L  ++RST  IL   + V     + +     + +    +  R       
Sbjct: 294 -----DATTILLEQNYRSTQTILDAANGVIRKNPSRKDKKLWTDSGPGAKIKRYDA---- 344

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                                           +    A  +A  I  +  +D        
Sbjct: 345 -------------------------------DNEHDEAAWVAERIDALADSD-------- 365

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             ++ +D+ V  R    + +             I           +   ++D +A  R  
Sbjct: 366 -GVKPRDVAVFYRTNAQSRVFEDAF----IRRGIPYKVVGGVRFYERKEVRDALAYLRLT 420

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISKF 481
           ++++D +S   ++  P     +  +  +       +  +    +        +       
Sbjct: 421 VNEDDIVSGRRVVNVPKRGIGDRAVACVDALADREQISFGAALRRVDEAVGISTRAAGGV 480

Query: 482 QHVIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
           +  +  +           P +     +L       +  +    +    +D L E ++   
Sbjct: 481 KKFVAVLDAARERVDAGEPPEVVLETLLNDSGYLAELNASTDPQDEARVDNLQELVSVAR 540

Query: 538 RNEQN-----------SYSSLQELISELEQ-YPPTIKRAHSANHNEV-RIMTVHTAKGLE 584
              +               ++   + ++             A+ + V  +MT+HTAKGLE
Sbjct: 541 EYTERVEAEVDVDSDVPGPTVANFLEQVSLVADADQIPDPEADSDGVVTLMTLHTAKGLE 600

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVFL      VF H+                                      +    
Sbjct: 601 FDVVFLSGMDQGVFPHERSLG----------------------------------EAKEM 626

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           EE  RL YVG+TRA   L + +    S   +         + +        ++    +++
Sbjct: 627 EEERRLAYVGITRARQLLHVSRAETRSAWGQPQFHPPSQFLEEMPGELLEAERAVAKSAL 686

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                     +           +  +    D     K 
Sbjct: 687 GIPGVRRGMSTAELTTPKRPAGDIPVLSAGDRVSHDKW 724


>gi|209761118|gb|ACI78871.1| DNA helicase RecB [Escherichia coli]
 gi|320645713|gb|EFX14698.1| exonuclease V subunit beta [Escherichia coli O157:H- str. 493-89]
 gi|320651013|gb|EFX19453.1| exonuclease V subunit beta [Escherichia coli O157:H- str. H 2687]
          Length = 1180

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVSAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMMRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQARGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|327314684|ref|YP_004330121.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289]
 gi|326946329|gb|AEA22214.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289]
          Length = 842

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/579 (18%), Positives = 173/579 (29%), Gaps = 120/579 (20%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                                    +   YE   ++   +DF+D+++ T  L +      
Sbjct: 160 ADEYAEDRAATERDRNARM-PAVHLIYKAYEARCRQANAMDFDDILLYTYLLFRDN---R 215

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            IR K  Q+  +IL+DE QDT+  Q  +I  L E          + R +  VGD+ QSIY
Sbjct: 216 EIREKYGQQFEYILVDEYQDTNYAQVNIISLLAE----------THRRICVVGDDYQSIY 265

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF GA    +L  +               + +L  ++RST  I+   + +    E     
Sbjct: 266 SFRGANIDNILDFRNKF--------TDARLFKLERNYRSTQFIVQAANSLMKHNE----- 312

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                  I          G   L++   S  +                          A 
Sbjct: 313 -----RQIPKEVYSKEAAGDKVLYKPCYSDRE-------------------------EAM 342

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  +  +   D              +  VL R    +       R       I     
Sbjct: 343 AVAAELKRIRHGD---------SCDYDNFAVLYRTNAQSRPFEDEFR----KQGIPYKII 389

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE--- 464
                     IKD++A  R + + +D+ +F  ++  P  +     + KI     +     
Sbjct: 390 GGLSFYQRKEIKDIIAYFRLVANPDDEEAFRRVINYPARSIGNTTVQKIIACAQQHAVSL 449

Query: 465 -----TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                +  EY        ++K       I   I  A   + ++    I+          S
Sbjct: 450 WETILSPAEYGLDVNKGTLAKLSSFRMLISSFIKKAALTNAYELGCEIIEKSGVGADIRS 509

Query: 520 RFGNE---VIDVLDEFLNFTLRNEQNSYSSLQE----LISELEQYPPTIKRAHSANH-NE 571
               E     + L+EF++             +E    L   L++           +   +
Sbjct: 510 GNEPEDLARRENLEEFMSAMQGFVDTGREEGREENVYLADYLQEVALYTDADKEEDDVPK 569

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H AKGLE P VF+V     +F                                 
Sbjct: 570 VTLMTIHAAKGLEFPTVFVVGLEENIFPSPMSSGS------------------------- 604

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                    K   EE  RLLYV +TRA    I+    N 
Sbjct: 605 ---------KRGIEEERRLLYVAITRAERHCILTNAKNR 634


>gi|238760477|ref|ZP_04621614.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia aldovae ATCC 35236]
 gi|238701319|gb|EEP93899.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia aldovae ATCC 35236]
          Length = 1182

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/887 (13%), Positives = 268/887 (30%), Gaps = 142/887 (16%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               + D      +    L        +    ++ K++   L F+DL+   +  L+++   
Sbjct: 294  LFSVIDTIYEQPLTLRDLILARAISEIRTSVQQEKRQRAQLGFDDLLSKLDAALQQQG-G 352

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I       +IDE QDT   Q+ +  +L                L  +GD KQ+I
Sbjct: 353  ELLAQSIRSRYPVAMIDEFQDTDPQQYRIFHTLYGG--------QGECGLLLIGDPKQAI 404

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    +R +       T          L  ++RS+  ++  V+++FS+ ++   
Sbjct: 405  YAFRGADIFTYIRARSEVSAHYT----------LETNWRSSFPMVRSVNRLFSLVDSPFL 454

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
              +     +             +    +  +   +  P    W    + +       ++A
Sbjct: 455  FEQIPFINVA----------AAEKNSGLSFEIKGKKQPAMHFWLQSGEGVGVSEYQQLMA 504

Query: 347  RRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            R+ A  I + +         + +    R +QA DI +LVR R +  L+      L     
Sbjct: 505  RQCAAQIRDWLTAGQQGLANLVTATGSRPVQASDITILVRSRAEAALVRDALSAL---AI 561

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  + D    KDL+ L + +L+ E + +    + + +       +  +     
Sbjct: 562  PSVYLSNRDSVFDTAEAKDLLWLLQAVLAPEQERALRSAMATGMLGLDAQMLDALNHDER 621

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
              + + +   ++        + V+  + E+I              +L    G ++     
Sbjct: 622  AWDALVDEFDRYRQHWQR--RGVLPMLREIIARRH------VAENLLATAGGERRLTDLL 673

Query: 522  GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                   L E L      L +E      L + I++        +    ++ + V+++T+H
Sbjct: 674  ------HLGELLQEAASQLDSEHALIRWLAQQIAQPNHQSDNQQLRLESDRHLVQVITIH 727

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V+L    +       +                          N  ++    
Sbjct: 728  KSKGLEYPLVWLPFIANFRQQQDVLYHDRHSFEAL-------------LDLNADAESQAL 774

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-----------VYD 687
             ++    E  RLLYV +TRA     I         +K    +   +             D
Sbjct: 775  AEEERLAEDLRLLYVALTRAVYHCSIGIAPLIKGGRKKQGESDMHLSALGYLVQRGQAGD 834

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
            + +  E++ ++            A        +  P    E   +    Q       +  
Sbjct: 835  AQYLSEKLAELAALQGGEISVSPAGHLDDVPWQPAPETLPELAARQFTRQLQDHWRVTSY 894

Query: 748  --------------------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
                                  ++     ++          +  +  S  +    G  +H
Sbjct: 895  SGLQQHGSTKGGVVPMLNIALQELLPRLDIDVVGEQALMAESRLTPHSFPRGAAPGTFLH 954

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAM 841
             LL+ +                    + +  +    L   +  +++ P+      +    
Sbjct: 955  DLLEPLDFSQPIDAGWLAEQL---QQQGFGEQWSVMLYQWLNDIVQTPLNETGVTLAQLT 1011

Query: 842  SCDSYSEVSVSGK--------------------------INCPKKDIIISGRIDQISISQ 875
                 +E+                               ++  +   ++ G ID +   Q
Sbjct: 1012 PHSKLAELQFYLPIDTLLCANELDALIKHYDPLSRQCPALDFQQVRGMLKGFIDLVFCWQ 1071

Query: 876  QNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
               ++ +YK++        +             +  Q  +Y   L  
Sbjct: 1072 GKYYLLDYKSNWLGEDSSAYTYDAMAQAMAEHRYDLQYQLYTLALHR 1118


>gi|327395987|dbj|BAK13409.1| DNA helicase II UvrD [Pantoea ananatis AJ13355]
          Length = 720

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/580 (17%), Positives = 188/580 (32%), Gaps = 116/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +  ++IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFSNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRMLAGD----------SGKVIIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 273 --GADTIRLEQNYRSTNNILKSANALIANNNGRLGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  S    F+ L +        R +   I   +              
Sbjct: 310 -------TDGSDGEPISVYCAFNELDES-------RFVVNRIKAWMENGNAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R + ++
Sbjct: 348 --ADCAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALAYLRLMANR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R +  T+++  ++       A    S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGVGDRTLDVVRQTAREKQITLWQATRELLQSRALAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L         H     ++        +    G +    I+ L+E +  T +   
Sbjct: 462 CELVDSLASETVDMPLHVQTDRVIKDSGLWIMYEQEKGEKGQARIENLEELVTATRQFSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H+AKGLE   VF+V     +F 
Sbjct: 522 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMALDEGG----------------------------------RLEEERRLAYVGVTRAM 607

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +L +          K         + +         +++
Sbjct: 608 MKLTLTYAETRRLYGKEVYHRPSRFIGELPEACIEEVRLR 647


>gi|227550044|ref|ZP_03980093.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
            44291]
 gi|227077890|gb|EEI15853.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM
            44291]
          Length = 1096

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/926 (12%), Positives = 251/926 (27%), Gaps = 156/926 (16%)

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                 ++ T         L        ++  ++ F + +     L    +   ++     
Sbjct: 220  KEMAGWRDTQQLRRAYLPLVEELNAQLRERGLVTFNEQMSVAARLAHDHE---FVGASQR 276

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            Q    +++DE QDTS  Q  ++RSL             P T+ AVGD  Q+IY + GA  
Sbjct: 277  QRYRVVMLDEYQDTSHAQRVLLRSLFGQGRNADQPRRHPLTVTAVGDPMQAIYGWRGATA 336

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
              +              G      +L  S+R+ A++L + ++V                 
Sbjct: 337  ANLAAFVEDFP---EPTGAPAPTKQLTTSWRNPAEVLALANRVSDSLLGTGS----DRVV 389

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                       G V+L        +        +          E               
Sbjct: 390  AALDPRPGAGAGEVELGFFEHEDEEIDFVADNLAAQYDAARAAGE--------------- 434

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                                   VLVRK K +P +            +         L D
Sbjct: 435  ------------------PFSAAVLVRKNKTSPEVAEALEE----RGVPFEIVGLAGLLD 472

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY----- 469
               + D +A+   ++   D  + + +L  P       D+  +  +               
Sbjct: 473  VPEVADTIAIASMLVRPGDSAAALRILAGPAVGLGLADLDALSRRAANLRGAAPAAPKPD 532

Query: 470  ------------------------------------------IQKFANCGISKFQHVIKY 487
                                                       +++   G+ + + V   
Sbjct: 533  EAADPTTHFEAQLEESVAEAQRITAGADTPAGLTDAVADLGETERYTPDGLRRIKAVASK 592

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +  L   A      D F  I+     R + ++R  +     LD  L           +SL
Sbjct: 593  LRWLRTHALGKRLPDVFADIISVFGIRTEVLARPSSTGTVHLDRLLEEVSSY---PGTSL 649

Query: 548  QELISELEQYPPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
              L+   E                  + V+I+T H AKGLE   V ++   ++ +  +  
Sbjct: 650  TALLDYFELTREHEGGLAPGNVPVRTDRVQILTAHKAKGLEWDTVAVIRADAETYKARTA 709

Query: 604  KKMHIMPSLNDDP-GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
              +     + D+                     +  ++    EE  RL YV +TR++ +L
Sbjct: 710  TFLTQPQLVPDEDFDAFADAENRTEFAKAAKAYVAAVRTKLAEESARLFYVAVTRSARKL 769

Query: 663  IICKHSNTSNEKKSNQRTWY-----DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            I+   +     KK  +   +     D+V ++             +    D   A    T 
Sbjct: 770  IVTGSAVKPGRKKVAEPYEHFAAIRDLVPETSVVHWYDGSSADVDEQEDDHDNAVPQRTG 829

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFS-------------------------------- 745
               +  +E  +     +  +                                        
Sbjct: 830  LWPHLQVEPGDAETAELVARARESLPEYIDGELYGLWERDTSALIEEHLAAASGEVPVMM 889

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
            P +   ++   L+  +     +         N    RG   H+ L+  +       ++  
Sbjct: 890  PGELTASDVVALSADSEQFARRARRPVPFKPNTYAKRGTAFHEWLEEFYGARPLLTEDE- 948

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
                       P  +   +       L+N    +  +    +   V         + ++ 
Sbjct: 949  ----------LPGVDEPEVETRTLEKLKNNFERSHWAR--RTPAFVEHPFELALGESVVR 996

Query: 866  GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN-KSLVCLL 924
            GR+D + +      + ++KT          +    + QL++Y +  +    +   +  + 
Sbjct: 997  GRMDAVFMDDNGWTVVDWKTGTKPA--PAQMKSA-MLQLAVYREAWRRIAGDGLDVRAVF 1053

Query: 925  IYVSEPKVFIIPQNKLNKAFAEISTK 950
             YV   + F+      +    ++  +
Sbjct: 1054 FYVRTGEDFVPSDLPGSDELEQLLRQ 1079


>gi|261822628|ref|YP_003260734.1| exonuclease V subunit beta [Pectobacterium wasabiae WPP163]
 gi|261606641|gb|ACX89127.1| exodeoxyribonuclease V, beta subunit [Pectobacterium wasabiae WPP163]
          Length = 1203

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/870 (13%), Positives = 280/870 (32%), Gaps = 122/870 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +  ++     +    L  +     +     E K++   L F+DL+   +D L++    
Sbjct: 317  VFEATEQLLVAPLSLRDLVIVRALSAIRGSVREEKRQRAELGFDDLLSRLDDALQQP-AG 375

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I +     +IDE QDT   Q+ + R+L                L  +GD KQ+I
Sbjct: 376  ERLADAIRERYPVAMIDEFQDTDPQQYRIFRTLY--------VGQPQCGLLLIGDPKQAI 427

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    +  +          G+  +   L  ++RS+  ++  V+++F   E+   
Sbjct: 428  YAFRGADIFTYMHAR----------GEVAAHYTLGTNWRSSHQMVGGVNRLFERLEHPFI 477

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                    +             +    +V     Q  P  + W +  + +        +A
Sbjct: 478  FHNIPFLPVS----------PAESKRSLVFDVAGQPQPALQFWLTGAEPIGVGDYQQQMA 527

Query: 347  RRIAYTISNMIGTDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            R+ A  I + +            +  +R+++A D+ VLVR R++  LI      L     
Sbjct: 528  RQCAAQIRDWLAASQRNEAWLITDDSQRLVKASDMSVLVRSRREASLIRDALSRLSIP-- 585

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +       D++ + + +L+ E + +    + + L       +  +     
Sbjct: 586  -SVYLSNRDSVFSTPEASDILWVLQAVLAPEQERTLRSAMATALMGLDAAQVDAL----G 640

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            ++E+ ++ +        + ++ + +    L  +    S H     +L + +G ++     
Sbjct: 641  QSESAWDALVDEF----AGYRALWRQRGVLPMLRALMSQHQLSENLLASTEGERRITDIL 696

Query: 522  GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                   + E L      L +E      L + I +      + +    ++ + V+I+T+H
Sbjct: 697  ------HIGELLQDASATLDSEHALVRWLSQQIVQPNPQAESQQLRLESDRHLVQIVTIH 750

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V+L    +     + I           D                  +    
Sbjct: 751  KSKGLEYPLVWLPFISNFRVQDQGIYHDRDSYQAVLDLQNN-------------EESQAL 797

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             ++    E  RLLYV +TR+     +       S +K  +    +  +       +    
Sbjct: 798  AEEERLAEDLRLLYVALTRSIYHCSVGVAPVQRSRKKDGSSDMHHSALGYLLQRGQEADV 857

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP----------- 746
              L + +          +       P  + ++ +      +  ++               
Sbjct: 858  ATLVSELEGMVGDGVALTRLQTTEAPRWQPDSPELTALRARHIERPLRDNWRVTSYSGLQ 917

Query: 747  ---IKNDINEPYILNPSTIDTKGKTNL--ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                 N  +    L+   I  + +      +  +  +  + G  +H L + +        
Sbjct: 918  QHGSTNTQDLVPRLDIEAIGERQEVGETQLTPHTFPRGASPGTFLHSLFETLDFTQPVDD 977

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCP 858
                     +  +       K  + ++     +     ++   + D  +E+     I  P
Sbjct: 978  DWLAEQLQLQGFEAHWHPVLKVWMDTLLTTPLDEQGITLSALENQDKQAELQFYIPIEAP 1037

Query: 859  KK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
             +                            ++ G ID +   +   ++ +YK++   P  
Sbjct: 1038 MQAAQLDRLAKCYDPLSAQCPVLSFQQVKGMLKGFIDLVFRWEGRYYLLDYKSNWLGPDA 1097

Query: 893  IEHI---------PYTHIAQLSIYEKILKD 913
              +           + +  Q  +Y   L  
Sbjct: 1098 SAYTHTAMAQSMAEHRYDLQYQLYTLALHR 1127


>gi|314978138|gb|EFT22232.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2]
 gi|315088601|gb|EFT60577.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1]
          Length = 1072

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 148/995 (14%), Positives = 296/995 (29%), Gaps = 122/995 (12%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             W         I    +  +       L KA           I +    L+    +   +
Sbjct: 122  AWDGISTGAHLITGARAYQLAAEVVMGLDKAPLAATHMGPTFIAQAVVKLAGAMASHDAS 181

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            P K +   +   +   L    K+  D +  I    +     +  L  +       A Y+ 
Sbjct: 182  PGK-VRRADARWRQMLLAAPTKRGGDRYADIDKWLSRVDEREELLDLV-------AAYQN 233

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             KK+  +++F D ++    L+        +  ++      +L+DE QDTS  Q +V+ +L
Sbjct: 234  LKKERGLVEFGDRMVQALHLVTHHP---RVGEELRARYRVVLLDEYQDTSSAQADVLAAL 290

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
               F    + H     + AVGD  Q+IY + GA    +L   R    +    G    ++ 
Sbjct: 291  ---FSGPDSAHGMGHPVMAVGDPLQAIYEWRGAAASNILEFHRRFPNK---EGTPAQVLS 344

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  + R    I+   +               ++  +R   S   + G     +       
Sbjct: 345  LATNRRCADQIINAAN--------------VASEELRQTLSSAVESGDHDPADDRAEVAV 390

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
             Q     E       ++          +  A  +       TI         +  D  +L
Sbjct: 391  GQPLVAPEGNRRGEVTVAAYPDWVKECQACADILVEAKERGTI--------ARWSDAAIL 442

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            VR+  D   +            + V   +   L     I  ++A  R ++ ++DD +   
Sbjct: 443  VRRNSDVADLYDSLTA----RDVPVRFANLSGLLRLPDIAMVVAHLRVLVDRQDDAAMAT 498

Query: 440  MLKSPLFNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQH 483
            +L +P    S DD+  +  +                      + + + +    G  + Q 
Sbjct: 499  LLAAPRLGLSTDDLAMVYRRARALAKARAKDDGLDLDDVEIHLSDAVMEGRPGGHERLQC 558

Query: 484  VIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             +K +   I      +  SP D    I           +   +        LD   N   
Sbjct: 559  ALKRVCAEIVEVDAHRADSPDDLVLRIEAITGLVDDMAADDPHRSAARRGHLDALWNAIR 618

Query: 538  RNEQNSY-SSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               ++    ++  +++ L         + RA + + + V + TVH AKGLE P+V + D 
Sbjct: 619  EARRSDPTMTIAGIVTWLAAEEDVGDGLPRAATDDRDAVTVSTVHGAKGLEWPLVIIPDM 678

Query: 594  GSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
               VF              ++PS        I  P S S  +  + +    + S   E  
Sbjct: 679  AQGVFPSTSTPDNFTSEAAVLPSFARGDASDISHPLSGSVVDTKAYVAALKEDSQWAEA- 737

Query: 649  RLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV +TRA ++L++  H      +       + D++ D           +  + I   
Sbjct: 738  RLAYVALTRAKERLVVSWHQWRPRRKGSLGPGRYADLLADMLGTVWPDFGERPDDDIQAG 797

Query: 708  -------------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                                 +         +    + +  +K       +  ++  P +
Sbjct: 798  TPWPVFAKDVGHGLIDNTSRSVDDPGQADRVKAWRTDADTLLKDARRHIDLQDEVALPPR 857

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL-------LQVIFTLPEHKR 801
               ++   L+ +    +           ++    G   H+         + I      + 
Sbjct: 858  LTTSQIVRLHANPQAFRDDLRRPMPRPADRGAGIGTAFHEWVSQRLAPAEPIPLFDAEEI 917

Query: 802  KNFITSYCTKNAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                    T+ A        +   L S+ +  E      A      + ++V         
Sbjct: 918  AELDEESITQEAVAVEPSGAENRALRSLCQAFEESRWAGA------TVLAVEKSFVMTIG 971

Query: 861  DIIISGRIDQISISQQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              ++ GR+D +     +     + ++KT      +          QLSIY      +   
Sbjct: 972  QTVVRGRLDAVVADPDHPGDELVIDWKTSPPRSADP--------LQLSIYRLAWAQARGI 1023

Query: 918  KSLV--CLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                   +  +V   +             A I T 
Sbjct: 1024 DPSRVWAVFHHVGANETISAEPLLDADQVAAILTA 1058


>gi|324119859|gb|EGC13738.1| exodeoxyribonuclease V [Escherichia coli E1167]
          Length = 1180

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   + F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGEVGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGEMQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|330807373|ref|YP_004351835.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas brassicacearum
            subsp. brassicacearum NFM421]
 gi|327375481|gb|AEA66831.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas brassicacearum
            subsp. brassicacearum NFM421]
          Length = 1229

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 134/1049 (12%), Positives = 292/1049 (27%), Gaps = 147/1049 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSME---TGNPTILKKAQTLQQASQTQCI 62
            GL   E      ++         +   ++    ++    G  +     + +Q A   +  
Sbjct: 212  GLEPAELIAAALQERSAALLDLKAPWRQWAVELLQICQQGVASKSVDGRKMQ-ARYFEPW 270

Query: 63   EERFSLL---SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             ++ +      S  L    T    +  + + +      +       + +           
Sbjct: 271  FQKITAWVDDESLELLDIGTGFSRLTPEGMAEAWKG--DVPNHPGLDAMASLKASLDALP 328

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                      A+++ A +E  K++   + F+D+++  +  L+  D    +   I ++   
Sbjct: 329  TPDAAVLQHAAQWVGARFEAEKRRRAEMGFDDMLLRLDAALQA-DGGERLASLIREQFPV 387

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
             LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F GA+    LR
Sbjct: 388  ALIDEFQDTDPVQYRIFESIYR-----IEDNDPGTGLFLIGDPKQAIYAFRGADIYTYLR 442

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +               +  L  +FRS+  ++  V+ VF   E+                
Sbjct: 443  AREA---------TAGRLHTLGTNFRSSHAMVGAVNHVFQNAESRPKGRGAFLFREPSGE 493

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIG 358
            + +  +       +   +   Q       W    +  L        +A   A  I+ ++ 
Sbjct: 494  NPVPFLSVESQGRKESLRVAGQVVAALNIWHLSSEQPLSGAVYRQSMAAACASEITALLN 553

Query: 359  TDTIFSNGKK------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                  +G        R ++  DI +LVR  K+   +             SV  +D+  +
Sbjct: 554  GGQSGRDGFTVDGKVLRGVRPADIAILVRDGKEAQAVRDALSA---RGVRSVYLSDKDSV 610

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  +DL+   +     + +      L S   N S  ++ ++           E   +
Sbjct: 611  FASQEARDLLVWLKACAEPDAERPLRAALASITLNLSLTELERLNQD--------ELAWE 662

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                    ++ V +    L  + +     +    ++    G +   +         L E 
Sbjct: 663  ARVMQFRGYRTVWRSQGVLPMLRRLLHDFELPQALMVRSDGERVLTNLL------HLCEL 716

Query: 533  LNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            L           + ++ L   L               ++   V+++T+H +KGLE P+VF
Sbjct: 717  LQQAAGELDGEQALIRHLSEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVF 776

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L    S          +H     N                   ++LI         E  R
Sbjct: 777  LPFICSTKPVDGSRLPLHYHDEANKAQISL----------KPTAELIAKADDERLAEDLR 826

Query: 650  LLYVGMTRASDQLIICKHSNTSNE----------------KKSNQRTWYDMVYDSFHNDE 693
            LLYV +TRA     +                           +      ++        +
Sbjct: 827  LLYVALTRAQHACWLGVADLKRGSNNRSILHVSALGYLLGGGAPLTESVELRRWLEDLQQ 886

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                +         +              PL       +            S   ++ ++
Sbjct: 887  GSDAVSYQPMPEATDEHYRPPRNEAVLLEPLVPLRKASENWWIASYSALRISESLSEGSD 946

Query: 754  PYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQVIF----TLP 797
                +P          L+                  +  N G  +H LL+       +  
Sbjct: 947  TAPESPQAQKLFDDERLDPDAPRETIAIGGDIHRFPRGPNPGTFLHGLLEWAAGEGFSSA 1006

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-------PMMTTAMSCDSYSEVS 850
                ++ I   C +           + L  + ++  +        ++          E  
Sbjct: 1007 PADIEDAIARRCNRRGWKGWITTLSDWLQHLIKMPMHVGNDQAPVVLEDLSQFQVEMEFW 1066

Query: 851  VS-------------------GKINCPKKDIIIS----GRIDQISISQQNIFIFEYKTH- 886
             +                   G      + ++++    G ID         ++ +YK++ 
Sbjct: 1067 FASHKVDVQKLDQLVCRFSHGGVARVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNW 1126

Query: 887  --------HHVPQEIEHIPYTHIAQLSIYEKILKDSYP--------NKSLVCLLI-YVSE 929
                         E   + + +  Q  +Y   L             ++ +   L  ++  
Sbjct: 1127 LGVDDMAYTVPAMEQSILDHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRG 1186

Query: 930  ------PKVFIIPQNKLNKAFAEISTKIP 952
                     F  P   L +    +    P
Sbjct: 1187 TRSASQGVYFAKPPRALIEQLDRLFQGAP 1215


>gi|302338886|ref|YP_003804092.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301636071|gb|ADK81498.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 670

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 100/597 (16%), Positives = 188/597 (31%), Gaps = 119/597 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L K L   Y         +DF+DLI+    L ++      +     +   +I++DE QD
Sbjct: 159 KLYKPLFEEYLANLHAYNAVDFDDLIMLPIRLFEEFPE---VLDAYRRRYRYIMVDEFQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TSL Q+ +++ L +            R +  VGD+ QSIYS+ GA  + ++  ++   + 
Sbjct: 216 TSLAQYHLMKLLAK----------KERNICVVGDDDQSIYSWRGANYQNIVNFEKDFPEL 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I+L  ++RST +IL   ++V +  +N +                      
Sbjct: 266 LE--------IKLEQNYRSTGNILAAANQVIANNKNRKSK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +LW  +            E +    D           A  IA  I+ +           
Sbjct: 298 -ELWTGL------DNGRSIEIFYPDDDLKE--------AEFIAQLIATL---------SM 333

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +   +  D  VLVR       I            I    +          IKD++A  R 
Sbjct: 334 REGYKYHDFGVLVRTNSLAATIENAFLAE----NIPYKVSGGQSFFQRKEIKDIIAYLRV 389

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---------VYEYIQKFANCGI 478
           + + +DD++F+ ++ +P        + K+     E E           Y      ++   
Sbjct: 390 LSNPDDDVNFLRIINTPRRGIGRVSLEKLRELADEKEWSLYSAASAIRYAEDAPVSDKVK 449

Query: 479 SKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNEVID------VLDE 531
           +     + +I              D    ++         I                +  
Sbjct: 450 AALGEFVTFIEYYREQILTGKKMADTTRSLVDKVDYWGYLIMENQKNERAARWKYKNIGI 509

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFL 590
           FL+   R E++  +    + + L +     +      N++ V +MTVH +KGLE  +VFL
Sbjct: 510 FLDLFERWEKDPDNDDPNIYNYLNRITLITRDDDQEENNDMVNLMTVHASKGLEFEIVFL 569

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 +  H                                            EE  RL
Sbjct: 570 AGVEDTIMPHARSL---------------------------------EEDPDNIEEERRL 596

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            YV +TRA  +L +         ++    +    + +   +     + +      + 
Sbjct: 597 FYVAITRAKQKLYLTSCKTRRVSREVIDSSPSRFLEEIPDHLIEYHQPEEEVESGEA 653


>gi|308183581|ref|YP_003927708.1| DNA helicase II [Helicobacter pylori PeCan4]
 gi|308065766|gb|ADO07658.1| DNA helicase II [Helicobacter pylori PeCan4]
          Length = 681

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 96/572 (16%), Positives = 187/572 (32%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIK 486
                 +L  P     +     I +    E   + E ++      K         +  + 
Sbjct: 388 RFFIKRVLNKPSRGLGKITQEWIFSLLDDEGLNLEEALKLGVFKGKLNPKNEHALKKFMA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVEEFCERFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +    +    + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDVHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA ++L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEELQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQLLQQEKPP 619


>gi|330469984|ref|YP_004407727.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328812955|gb|AEB47127.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 1114

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 145/959 (15%), Positives = 247/959 (25%), Gaps = 168/959 (17%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
                Q    +I          + T   L     L   Y   K     +DF D +     +
Sbjct: 216  FADVQSRPGRIYADVRKALALQQTRLKL---LPLVRAYARRKDDFEAMDFADQLARAARV 272

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
             +       I          +L+DE QDTS  Q  ++R+L  D             + AV
Sbjct: 273  ARDHPGVGEI---ERDRYRVVLLDEYQDTSHAQVVLLRALFGD----------GHPVTAV 319

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD  QSIY + GA    + R          + G    ++ L  S+R+  +IL V + + +
Sbjct: 320  GDPCQSIYGWRGASAGTLDRFPTEF---VGSDGSPARVLGLTTSWRNRPEILAVANALAT 376

Query: 280  IPENAQGLSEDS------TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
                A     +          I HRS R    GTV          ++             
Sbjct: 377  PLRAAGARVPELHAALSVDEPIAHRSPRGAAAGTVHCALLSTYADEADWIADSL------ 430

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
              L     A+ + R +   I                V       VLVR R   P I    
Sbjct: 431  --LAAWQGAARMPRALPEQI---------------PVTARPTTAVLVRLRSQIPAIAAAL 473

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       + V       L D   ++D++   R +    D  + + +L    +     D+
Sbjct: 474  RE----RGLPVEVVGLGGLLDTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDL 529

Query: 454  FKICT----------------------QRHETETVYEY------IQKFANCGISKFQHVI 485
              +                         R +  T+ E        Q ++  G ++ +   
Sbjct: 530  VALHRRAKAIAAARRQLADDGDPEIVPDRLDEATLVEALADLGPAQAYSAEGYARLRAYA 589

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-------IDVLDEFLNFTLR 538
            + +  L +     S  +    I        +   R G E           LD   +   R
Sbjct: 590  RELGLLRYRLDQ-SLPELIADIERTTGLDVEVAVRAGGEGAGDAGLARAHLDALGDVAAR 648

Query: 539  NE-QNSYSSLQELISELEQYPPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               +   ++L   ++ L                     V+I+T H AKGLE  VV +   
Sbjct: 649  FSGETPGATLAGFLAYLAAAEDEERGLAPGEVEVVEGAVQILTAHAAKGLEWDVVAVAGL 708

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL------------KK 641
               V+        H +  L   P              +     +              + 
Sbjct: 709  SRGVWPGPVRNSDHWLGGLGVLPFPLRGDADGLPELALAEAADQRAVARTMAEFTDAWRA 768

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------WYDMVYD 687
              + E  RL YV +TR    L+   H      K+    +                 +V +
Sbjct: 769  HDEREERRLAYVAVTRPRRLLLCSGHWWGEGTKRPRGPSALLREIHDACLDGGPGHLVDE 828

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER--------EETIKQLMDEQKI 739
                         T  + + EW A       P               E            
Sbjct: 829  WTPEPTPDAVNPTTEVVLRAEWPADPLGVRRPALAEAAALVRRFLTGEGGPDNSAASDPQ 888

Query: 740  PKKLFSPIKNDINEPYILN-----------------------PSTIDTKGKTNLESLLSD 776
              +        + E   L+                                         
Sbjct: 889  VARWRREADLLLAERAELSRLSGPIDVVLPEQLSVTQLVSLRRDPAALARTLRRPLPAEP 948

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
            N    RG   H  L+  F                 +  L  A +           L+   
Sbjct: 949  NPYARRGTAFHAWLEQRFG---------ADRLLDTDE-LPGAADEDAAPDEALAELQRRF 998

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEH 895
            + +  +    + + V          +++ GR+D +         + ++KT          
Sbjct: 999  LASEWAD--RTPIEVEVPFATVIGGVVVRGRMDAVFRRPGDRFDVVDWKTGARPTGASAE 1056

Query: 896  IPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
            +      QL++Y     +    P   +     YV E                 + T IP
Sbjct: 1057 VA---AVQLAVYRLAWAELAGVPVDRVGAAFHYVREGVTVRPADLLDLDGLTTLITSIP 1112


>gi|200389247|ref|ZP_03215859.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
 gi|199606345|gb|EDZ04890.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
          Length = 1181

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHNLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|281358424|ref|ZP_06244905.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548]
 gi|281315047|gb|EFA99079.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548]
          Length = 679

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/602 (16%), Positives = 195/602 (32%), Gaps = 119/602 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  L   Y+   +    LDF+D+++    L  +      +  +  +   ++LIDE QDT+
Sbjct: 171 AAQLYEEYQTLLEMQNSLDFDDMLLLVYRLFTEHPD---VLERYRETYQYLLIDEYQDTN 227

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +++ LT D             L  VGD+ QSIYS+ GA+   +L           
Sbjct: 228 AAQFTIVKLLTGD----------RCNLCVVGDDDQSIYSWRGADISNILGFPDHFP---- 273

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +++L  ++RST  IL   + V     N                         Q
Sbjct: 274 ----GAKVVKLEQNYRSTTSILNAANVVIGSNANRHEK---------------------Q 308

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW  +        + +     +  +   +       A  I   I+ M             
Sbjct: 309 LWSNL-------GDGEPVKIVTTENGESE-------AEFIGSMITQMKNDKP-------- 346

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            ++ +D  +L R    +  +    R      +I               IKD +A  + ++
Sbjct: 347 ELRYQDFAILYRSNHLSRQLEQTLR----RQQIPYRLVGGQEFFKRREIKDAVAYLKLLV 402

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQ 482
           +  DD S + +L +P    ++  +  + T R        E     E+ ++      +  +
Sbjct: 403 NPCDDQSLLRILGTPPRGLAQKAVDSLKTGRRAKHKPMFELLAEEEFQKELTPKAAAAAR 462

Query: 483 HVIKYIHELIHI-----AQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
              +   +         A      +F   I      ++ +          + +DEF+   
Sbjct: 463 EFAEVYAKYKERFAEPGALAWKITEFLKEIGYLDGLQRIYKDLKDAMKRRENVDEFITAI 522

Query: 537 LRNE--QNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDT 593
            + E  Q    +L+  +  L     + K        + V +MTVH +KGLE PVVF+V  
Sbjct: 523 TQYEERQAEPPTLEAYLENLALLEESDKVEEETGTVDAVTLMTVHASKGLEFPVVFVVAM 582

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F H+                                     L++ + EE  RL YV
Sbjct: 583 ERNIFPHER-----------------------------------ALEEGSVEEELRLFYV 607

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +TRA   L + +         +        ++            +       ++ +   
Sbjct: 608 AITRARKYLYLLRAKERMQRGITRATLPSPFLHLLTDEVAERTTPEELLRPASEDEVRQA 667

Query: 714 WS 715
           ++
Sbjct: 668 FA 669


>gi|320539715|ref|ZP_08039379.1| exonuclease V (RecBCD complex), beta subunit [Serratia symbiotica
            str. Tucson]
 gi|320030327|gb|EFW12342.1| exonuclease V (RecBCD complex), beta subunit [Serratia symbiotica
            str. Tucson]
          Length = 1181

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 133/967 (13%), Positives = 298/967 (30%), Gaps = 138/967 (14%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
            E I   +  +            +L  ++G       ++ L               L    
Sbjct: 224  EQIVARIDAIKAHWQKVAGDLETLIRQSGADKRSYSSKHLPNWLGKVGEWAMKETLDYQL 283

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
              +    +++++ ++  +         +  +       D      +    L        +
Sbjct: 284  PKELDKFRQSVLLEKTKQG--------EAPRHALFTAIDELFAAPLTLRDLIIARALSEI 335

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                ++ K++   L F+DL+   +  L+       +   I Q     +IDE QDT   Q+
Sbjct: 336  RRSIQQEKRQRAELGFDDLLSRMDSALQ-NVGGEQLAQAIRQRYPVAMIDEFQDTDPQQY 394

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             + + L                L  +GD KQ+IY+F GA+    +R +       T    
Sbjct: 395  RIFQKLY--------VGQQDCGLLLIGDPKQAIYAFRGADIFTYMRARSEVSAHYT---- 442

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RS+  ++  V+ +F   E      +     +             +  + 
Sbjct: 443  ------LETNWRSSPAMVASVNTLFCQLEKPFLFGQIPFIEVS----------AAEKNQG 486

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKK 368
            +V +  +Q  P  + W    + +       ++AR  A  I + +         + +   +
Sbjct: 487  LVFELYNQSQPAMQFWLQQGEGVGVSDYQQLMARLCATQIRDWLSAGQQGQAWLDNGKCR 546

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R +QA +I VLVR R +  L+      L      SV  ++R  + D    KDL+ L + +
Sbjct: 547  RPVQASNITVLVRSRNEAALVRDALSALSIP---SVYLSNRDSIFDTPEAKDLLWLLQAV 603

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L  E   +    + + L       +           +  E           K++ + ++ 
Sbjct: 604  LVPEQGRTLRSAMATGLMGLDAPMLA--------GLSSDELAWDALVDEFDKYRTLWRHR 655

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYS 545
              L  +++          +L +  G ++            L E L      L +E     
Sbjct: 656  GVLPMLSEVMKTRYLAENLLASPGGERRLTDVL------HLGELLQEAAAQLDSEHALVR 709

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             L + I++  +     +    ++ + V+++T+H +KGLE  +V+L   G+          
Sbjct: 710  WLAQQIAQPNRQSDNQQLRLESDRHLVQVITIHKSKGLEFDLVWLPFVGNFRQQQALYHD 769

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662
             H   +L D                +  D +   ++    E  RLLYV +TR+       
Sbjct: 770  RHSFQALLDLN--------------VNEDSLAWAEEERLAEDLRLLYVALTRSVYHSSIG 815

Query: 663  ---IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI-------AY 712
               +I            ++     +V      D       L         +         
Sbjct: 816  IAPLIQGARKKQGGTDVHRSALGYLVQAGQAGDAAYLHECLQQLAGSGVVLSRVETLNEQ 875

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIP-----KKLFSPIKNDINEPYILNPSTIDTKGK 767
             W      +T L  ++  +Q+ D  ++      ++    +  D+     ++ +    +  
Sbjct: 876  PWQPQAAISTKLAAKDFTRQIQDFWRVTSYTGLRQHGGNLMQDLLPQLDIDAAGEQAEKG 935

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
              + +  +  +    G  +H + + +         +          + +       LL  
Sbjct: 936  EPVLTPHTFPRGAAPGTFLHSVFETLDFTQP---LDEQWLLKQLQQQGFADHWQPILLAW 992

Query: 828  ITRLLENPM------MTTAMSCDSYSEVSVSGK--------------------------I 855
            +  LL  P+      +         +E+                               +
Sbjct: 993  VQVLLTTPLNDSGVTLAALAPQHKQAELQFYLPINRVLQAHELDELVKRHDPLSARCPVL 1052

Query: 856  NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSI 906
            +  +   ++ G ID +   Q   ++ +YK++        +           + +  Q  +
Sbjct: 1053 DFQQVQGMLKGFIDLVFCWQDKYYLLDYKSNWLGEDSSAYTRPAMERAMAEHRYDLQYQL 1112

Query: 907  YEKILKD 913
            Y   L  
Sbjct: 1113 YTLALHR 1119


>gi|261855720|ref|YP_003263003.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
 gi|261836189|gb|ACX95956.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
          Length = 728

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/632 (16%), Positives = 196/632 (31%), Gaps = 130/632 (20%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                +  S          +   YE+  ++  ++DF +L++   +LL+  D    +R   
Sbjct: 161 LRARHLATSGDHLNDAIMPVYQAYEDICQRGGLVDFTELLLRATELLRDHDT---LRQHY 217

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            +    +LIDE QDT+ +Q+   R L  +             +FAVGD+ QSIY + GA+
Sbjct: 218 QRRFRQVLIDEFQDTNSLQYAWARLLVGED----------NGIFAVGDDDQSIYGWRGAK 267

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            + +    R              ++ L  ++RST  IL   + + +  +   G +     
Sbjct: 268 IEHIHDFARDFSN--------THLVRLEQNYRSTGHILDAANAIITRNQGRLGKT----- 314

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                           LW             Q   +   F+   +       A  +   I
Sbjct: 315 ----------------LW-------TEGERGQPIRYYLAFNEQDE-------AYFVTQQI 344

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
              +             +   +  +L R    +  I            +           
Sbjct: 345 EQAVRDG----------LPRSECAILYRANAQSRAIEEAL----IRAGLPYRVYGGLRFF 390

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ- 471
           D   I+D +A  R + +++DD +F  ++ +P     +  +  +    R    ++++    
Sbjct: 391 DRAEIRDALAYLRLVANRDDDAAFERVINNPARGLGDKSLQALRDQARTAATSLWQASIN 450

Query: 472 -----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
                 F        +  I  I  L   +   +  D   + +     R+Q       E  
Sbjct: 451 LLASGAFPPRASGGLRQFIDLIDSLAVDSATQTLSDRVAICIDRSGLREQHKKDRDQERA 510

Query: 527 ----DVLDEFLNFTLR--NEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
               + LDE +N       + +    + EL + L Q           A  + V++MT+H 
Sbjct: 511 QSKLENLDELVNAARGFVFDPDESPGMSELDAFLSQTSLDAGDAQGEAWEDCVQLMTLHA 570

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE  +VFLV     +F H+                                      
Sbjct: 571 AKGLEFEMVFLVGMEEGLFPHQMSIDEPG------------------------------- 599

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL YVG+TRA   L +    +     +         +             +
Sbjct: 600 ---RLEEERRLCYVGITRAQKVLTLTSTESRRLHGRQMFPMPSRFLG------------E 644

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
           L   +  +     + +       P + E T  
Sbjct: 645 LPGKLIDEIRPRAQQAFRAQSGLPGKPESTEA 676


>gi|307292736|ref|ZP_07572582.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1]
 gi|306880802|gb|EFN12018.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1]
          Length = 770

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/551 (18%), Positives = 173/551 (31%), Gaps = 120/551 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y+   +     DF DL+++   +LK+      +     Q   +I++DE QDT+ 
Sbjct: 193 QKLYAAYQARLRDVNACDFGDLLLHVLVILKRH---RDVLESYQQRFRYIMVDEYQDTNS 249

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +          + + +  VGD+ QSIYS+ GAE   +LR ++        
Sbjct: 250 SQYLWLRLLAQ----------TRKNICCVGDDDQSIYSWRGAEVANILRFEKDFP----- 294

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 I+ L  ++RST  IL     V +   N  G +                     L
Sbjct: 295 ---GAKIVRLEQNYRSTPHILGAASGVIAENGNRLGKT---------------------L 330

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W  +      +       W    +           ARR+   I ++              
Sbjct: 331 WTDIDVGEKVR---VIGVWDGPEE-----------ARRVGDEIESIERNGGSLD------ 370

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               ++ +LVR +  T               +       F   +   I+D +A  R +  
Sbjct: 371 ----EVAILVRAQHQTREFEDRF----IQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQ 422

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++  P     +  + K+    R E   +           +           
Sbjct: 423 PADDLAFERIVNVPKRGLGDKAVEKLHRLARAEGIPLALAAARILDTDEMTPQARRSLGA 482

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            I  +      A      +    IL          +    E    ++ L+E        E
Sbjct: 483 FIGDLARWRDRAAQLPHAELARQILDESGYTAMLQAERTTESAGRLENLNELTRAMEEYE 542

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L + LE     +     A+  ++ IMT+H AKGLE   VFL      +F  
Sbjct: 543 T--------LGAFLEHVSLVMDNEAQADERKITIMTIHAAKGLEFDTVFLAGWEEGIFPS 594

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +       + S                                 EE  RL YV +TRA  
Sbjct: 595 QRALDEGGLNS--------------------------------LEEERRLAYVAITRARK 622

Query: 661 QLIICKHSNTS 671
             +I   +N  
Sbjct: 623 LCLILHAANRR 633


>gi|294785780|ref|ZP_06751068.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27]
 gi|294487494|gb|EFG34856.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27]
          Length = 737

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 105/546 (19%), Positives = 180/546 (32%), Gaps = 117/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y     ++  +DF D+++NT  LL+K +    I  K+  +  +I+IDE QDT+ +
Sbjct: 169 EVYDKYNRVLLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 224

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +          
Sbjct: 225 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFETNYNN----- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST  IL   +++    ++++                        LW
Sbjct: 270 ---AKIIKLEENYRSTTTILDAANELIKNNKSSKDKK---------------------LW 305

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              +  ++  + S       RI   I                 I
Sbjct: 306 -------TQNGKGDLIKVLACDNARDEVS-------RIIEIIKENHQNG----------I 341

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D+ +L R    + +           Y I               IKD++A    I++ 
Sbjct: 342 AYRDMTILYRTNAQSRVFEEGL----LRYSIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 397

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484
           +D+L+   ++  P     E  + KI    R     + E +               K   +
Sbjct: 398 QDELNLQRIINVPKRKVGEKGVEKIIAYARENNLNLLEALSHIKEISGLTAVGKEKLLEM 457

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN 542
              I EL  ++           ++   K        +      I+ +DEF N  L  E  
Sbjct: 458 YDIIKELKDLSYTEIASYIVQTLIDKIKYIDYIKENYDDAEARIENIDEFKNSILELE-- 515

Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      L   LE     +         + V++MT+H +KGLE P+VFLV   +++F   
Sbjct: 516 NIVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGS 575

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +   EE  RL YV +TRA  +
Sbjct: 576 ----------------------------------RAMFDEKEMEEERRLCYVALTRAEKK 601

Query: 662 LIICKH 667
           L +   
Sbjct: 602 LYLSHA 607


>gi|332109888|gb|EGJ10516.1| ATP-dependent DNA helicase UvrD [Rubrivivax benzoatilyticus JA2]
          Length = 784

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/650 (16%), Positives = 209/650 (32%), Gaps = 144/650 (22%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L S             +  +  +  P        +Q E     +
Sbjct: 100 LRAHWKAAGLPQSFQILDSGDQLSAVKRVVKAMNLDEERFVPKQVAWFIAAQKE-----E 154

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                 +      +  L + +   YEE  ++  V+DF +L++ + +LL+  +    +R  
Sbjct: 155 GRRPAAVEAFDEHTRKLVQ-VYEAYEEQCRREGVVDFAELMLRSYELLRDDE---PLREH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   H+L+DE QDT+ +Q+  ++        G+        +FAVGD+ QSIY+F GA
Sbjct: 211 YRRRFGHVLVDEFQDTNRLQYAWLKMFAPPGAQGQG-------VFAVGDDDQSIYAFRGA 263

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R  + R        S+I+L  ++RS  +IL   + + +      G +  + 
Sbjct: 264 RVGNMADFEREYRVR--------SVIKLEQNYRSFGNILDAANALIAHNAQRLGKNLRTD 315

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G+   VQ                            + +S    A+ +   
Sbjct: 316 AG-------PGEPIRVQ----------------------------EAASDYAEAQWLLDE 340

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
              +              +   +I VL R    + +I         +  I          
Sbjct: 341 ARELHRGG----------MPRSEIAVLYRSNAQSRVIESAL----FNAGIPYRVYGGLRF 386

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471
            +   +K  +A  R + + +DD SF+ ++  P        I ++    R    ++ + + 
Sbjct: 387 FERAEVKHALAYLRLLENPDDDTSFLRVVNFPARGIGARSIEQLQDAARASGRSLAQSVG 446

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLD 530
                     Q  +  +  +    Q  +  +    ++        + +   G + I+ L 
Sbjct: 447 AVPGKAGLNLQGFVHKLDTMRSATQGLTLREIIEHVVHESGLLDFYRTEKEGQDRIENLQ 506

Query: 531 EFLNFTLRN---------------EQNSYSSLQE-------------------LISELEQ 556
           E +N                    +++   +L                     L + L  
Sbjct: 507 ELVNAAESFVTQEGFGKDAVALPLDEHGPGTLAGGGETAIPSPDAETGEIVSPLAAFLTH 566

Query: 557 YPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                      A  + V++MTVH+AKGLE   VF+      +F H+              
Sbjct: 567 ASLEAGDNQAQAGTDAVQLMTVHSAKGLEFDAVFITGIEEGLFPHEQSLS---------- 616

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                        EE  RL+YV +TRA  +L + 
Sbjct: 617 ------------------------DADGVEEERRLMYVAITRARKRLYLS 642


>gi|22127040|ref|NP_670463.1| exonuclease V subunit beta [Yersinia pestis KIM 10]
 gi|45442649|ref|NP_994188.1| exonuclease V subunit beta [Yersinia pestis biovar Microtus str.
            91001]
 gi|21960090|gb|AAM86714.1|AE013917_2 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia pestis KIM 10]
 gi|45437515|gb|AAS63065.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia pestis biovar Microtus str. 91001]
          Length = 1241

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 128/989 (12%), Positives = 295/989 (29%), Gaps = 164/989 (16%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
            +   +  L         +  +L   +G       ++ L    +   +             
Sbjct: 247  VVTQIDALKAEWRLAAPELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPK 306

Query: 76   QKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
            +    +++++   T++       L   +    ++ + +RD      + +   +       
Sbjct: 307  ELEKFRQSVLLEKTKKGAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSV------ 360

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                 ++ K++   L F+DL+   +  L++      +   I       +IDE QDT   Q
Sbjct: 361  -----QQEKRQRAELGFDDLLSKLDAALQQSG-GELLAQSIRTRYPVAMIDEFQDTDPQQ 414

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + +  ++                L  +GD KQ+IY+F GA+    +R +       T   
Sbjct: 415  YRIFHTVYGG--------QEACALLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT--- 463

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                   L  ++RS+  ++  V+++FS+         +    I   +++     + ++  
Sbjct: 464  -------LETNWRSSFPMVQSVNRLFSLVNTPFLF--EQIPFINVAAAKKNHDLSFEI-- 512

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGK 367
                    +  P    W    D +       ++AR+ A  I + +         + +   
Sbjct: 513  ------KGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELLTTKG 566

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             + +QA DI +LVR R +  LI      L      SV  ++R  + +    KDL+ L + 
Sbjct: 567  PKPVQASDITILVRSRAEAALIRDALSAL---AIPSVYLSNRDSVFETTEAKDLLWLLQA 623

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +L+ E + +    + + +       +  +       + + +    +        + V+  
Sbjct: 624  VLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQR--RGVLPM 681

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            + E++              +L    G ++            L E L        + ++ +
Sbjct: 682  LREMMARRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSEHALI 729

Query: 548  QELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            + L  ++ Q      + +    ++ + VR++T+H +KGLE P+V+L   G+       + 
Sbjct: 730  RWLAQQIAQPNPQSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLY 789

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-- 662
                                     N   +     ++    E  RLLYV +TR+      
Sbjct: 790  HDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRSVYHCSV 836

Query: 663  ----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW-----IAYE 713
                +I        E   ++     +V      D  V   KLT                 
Sbjct: 837  GIAPLIKGGRKKQGESDMHRSALGYLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEP 896

Query: 714  WSTHHPENTPLEREETIKQ--LMDEQKIPKKLFSPIKNDINEPYILNPSTID-------- 763
                  +  P    E   +      Q   +               L  S           
Sbjct: 897  PDDKPWQPQPEALPELTARHFTRKMQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGA 956

Query: 764  ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
                                 + +  +  +  +    G  +H LL+ +      +     
Sbjct: 957  PLQVLLPRLDIDAVGEQAVVTEDDHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLS 1016

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK 859
                    + +  +    L   +  +++ P+      +         +E+     I+   
Sbjct: 1017 ERL---QQQGFSEQWAPVLHQWLNDIVQTPLTDTGATLAGLSPERKQAELQFYLPIDSLL 1073

Query: 860  K--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
            +                            ++ G ID +   Q   ++ +YK++       
Sbjct: 1074 RAEVLDRLIKQYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSR 1133

Query: 894  EHIPY---------THIAQLSIYEKILKD 913
             +             +  Q  +Y   L  
Sbjct: 1134 AYTVEAMTQAMAEHRYDLQYQLYTLALHR 1162


>gi|307625588|gb|ADN69892.1| exonuclease V subunit beta [Escherichia coli UM146]
          Length = 1180

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 132/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQICDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCNDDIAWQTAQI 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          +  +    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPID-PNWVQEKLELGG--FEPQWELV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      +      D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|298293080|ref|YP_003695019.1| UvrD/REP helicase [Starkeya novella DSM 506]
 gi|296929591|gb|ADH90400.1| UvrD/REP helicase [Starkeya novella DSM 506]
          Length = 833

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 111/651 (17%), Positives = 202/651 (31%), Gaps = 114/651 (17%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+   K    +DF DL++    LL++      +     +   +IL+DE QDT++
Sbjct: 235 QKLYTDYQARLKALNAVDFGDLLLEGIRLLRENPD---VLADYHRRFRYILVDEYQDTNV 291

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +            R +  VGD+ QSIY + GAE   +LR +         
Sbjct: 292 AQYLWLRLLAQ----------GSRNVCCVGDDDQSIYGWRGAEVDNILRFESDFP----- 336

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 ++ L  ++RST  IL     + +  E   G +  S                   
Sbjct: 337 ---GAKVVRLERNYRSTGHILGAAAHLIAHNEGRLGKTLFS------------------- 374

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                       N ++ + T  +DS  +       AR I   I  +       +      
Sbjct: 375 ---------EGENGEKVTVTGAWDSQEE-------ARAIGEEIEALQREGHALTQ----- 413

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                + +LVR              L     ++          +   I+D +A  R I S
Sbjct: 414 -----VAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERAEIRDALAYLRVIAS 464

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQH 483
             DDL+F  ++  P     +  + +I    R     + E  ++       K       + 
Sbjct: 465 PADDLAFERIVNVPKRGLGDAALRQIHDHARAAQLPLIEAARELVGSEELKPKVRLTLRD 524

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           ++               H+   ++L      + +      +    L+         E   
Sbjct: 525 LVASFDRWREQMATLPHHELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSME--- 581

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               + LI  LE     +        + V IMT+H+AKGLE   VFL      VF ++  
Sbjct: 582 --PFENLIGFLEHISLVMDVDSGNGGDAVNIMTLHSAKGLEFDTVFLPGWEEGVFPNQR- 638

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                           +    ++  EE  RL YVG+TRA  +  
Sbjct: 639 -------------------------------ALDEQGRAGLEEERRLAYVGITRARRRAK 667

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +   SN               + +    D  V + +  +     +   Y     +  +  
Sbjct: 668 VFFASNRRIHGLWQSAVPSRFLDELSEKDVEVTESRGGSGWGGGQGGGYAGRYGYGPSRF 727

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
            + E              +  +   +  +E      ++   +G   +E  L
Sbjct: 728 DQAETFGSSYSTPGWQRAQNAAKSGSGFSEGRSRYAASESARGGRIIEGEL 778


>gi|261344760|ref|ZP_05972404.1| hypothetical protein PROVRUST_06024 [Providencia rustigianii DSM
            4541]
 gi|282567204|gb|EFB72739.1| exodeoxyribonuclease V, beta subunit [Providencia rustigianii DSM
            4541]
          Length = 1201

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 133/981 (13%), Positives = 305/981 (31%), Gaps = 153/981 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFFL 74
             K+ W   +     +     +   + +   L    A+    A Q     +    +   F 
Sbjct: 241  VKEAWKAHHGDFEKLITDSDVDKRSYSSRFLPSWLAKITDWAHQETEDYQLPQEILERFT 300

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
              +   +    ++  +  + ++  ++ +   + + +RD      + +           + 
Sbjct: 301  QSRLDEK----SKSGSGPAHEVFRQIDELLAQTLTLRDLIIPQAISE-----------VR 345

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
                  K+    L F+DL+   +  L++ D    +   I +     +IDE QDT   Q+ 
Sbjct: 346  QTIAREKQSRGELGFDDLLTRLDKALQQ-DGGTLLAEAIAKRFPVAMIDEFQDTDPQQYR 404

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            + + + +        ++    L  +GD KQ+IY+F GA+    +  K+      T     
Sbjct: 405  IFQRIYQ--------NTGDSALLFIGDPKQAIYAFRGADIFTYIAAKKQVSAHYT----- 451

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                 L  ++RS+ +++  V+++FS   N     +     + +    I +          
Sbjct: 452  -----LETNYRSSQNMVEAVNRIFSHCNNPFIFEQIPFQKVNYAPHNINK---------- 496

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKKR 369
               H          W    +++        ++++ A  I+  +           +  K+ 
Sbjct: 497  TLFHQGSEVKALTFWLQNSEAVSVAEYEQAISQQCAAQIAQYLSGGLQGTTYFVNQQKQT 556

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             ++A DI VLVR R++  LI      L      SV  ++R  +      K+L+ L + +L
Sbjct: 557  PVEASDITVLVRSRREAILIRDALNQLNIP---SVFQSNRESVFATQEAKELLWLLQAVL 613

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
            + E +      L + LF  +  DI  +       E V +   ++A     +         
Sbjct: 614  TPEKERVLRSALATGLFGLTAQDIDNLNYDEKVWENVVDEFARYAVIWHKR--------G 665

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSS 546
             L  +    S       +L    G ++ +          + E L      L  E      
Sbjct: 666  VLPMLRVVMSQRHIAETLLSGVDGERRLMDIM------HIGELLQAMSLQLEGEHTLTRW 719

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            L + I+  +      +    ++ + V+I T+H +KGLE  +V+L    + +   + +   
Sbjct: 720  LAQQIAHPDHQSDAQQMRLESDRHLVQISTIHKSKGLEYKIVWLPFASNFLPQSQGLFHD 779

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL---- 662
                              +K   +   + +    +    E  RLLYV +TR         
Sbjct: 780  R-------------EDFITKLDLDDAKEYVDLADEERLAEDLRLLYVALTRGIYHCSVGI 826

Query: 663  --IICKHSNTSNEKKSNQRTWYDMVYDSFHNDE-------RVKKIKLTNSINKDEWIAYE 713
              +I  +   +     +      ++      D             +  +    + + A  
Sbjct: 827  APLIKGNRKKAGNSDLHLSALGYLLQKGQEGDSVLLTNMLTELSNETIDVQRIESFDAER 886

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKK----LFSPIKNDINEPYILNPST-------- 761
             +        L  +E  +   D  ++              +      L  +         
Sbjct: 887  LNLTITSTDDLSAKEISRHFDDHWRVTSYSGLSYHGSYSEEEQTLSALQFANSLAPKMDI 946

Query: 762  ------IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
                     + + NL +     +    G  +H L++ +    +   +            +
Sbjct: 947  EASSDLALIESEDNLFTPHRFPKGAAPGTFLHGLMEEVDFSGDISSEWLEEQLQAAGFDI 1006

Query: 816  WPAKEYKNLLLSITRL-LENPM--MTTAMSCDSYSEVSVSGKIN---------------- 856
               +  +  L +I  + L +    ++  +  D   E+     I+                
Sbjct: 1007 QWVEMLQAWLNAILTVPLADDELCLSALLPQDRLDEMQFYLPIDSLLSAKDVDAVTHQHD 1066

Query: 857  ----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPY---- 898
                        +   I+ G ID     +   ++ +YK+++          E +      
Sbjct: 1067 PLSKRCPPLNFEQVQGILKGFIDLTFCWKGKFYLLDYKSNYLGEDASFYTQEAMAEAMID 1126

Query: 899  -THIAQLSIYEKILKDSYPNK 918
              +  Q  +Y   L     ++
Sbjct: 1127 HRYDLQYQLYSLALHRFLQHR 1147


>gi|114326871|ref|YP_744028.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1]
 gi|114315045|gb|ABI61105.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1]
          Length = 759

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 111/744 (14%), Positives = 230/744 (30%), Gaps = 135/744 (18%)

Query: 8   SLNESYELIYKDLWP-LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   L   +    +   +   +  +      +      L         +++ 
Sbjct: 84  AAREMRERVGAILGEKVEGLWLGTFHALCARMLRRHAEYV-----GLSSNFSILDSDDQM 138

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            LL     T +   ++  +        P L   +++ +D  +             ++   
Sbjct: 139 RLLKQVAETFRVDTKRWPL--------PGLMAAIQRWKDRGLTPERVTPAEDTDYASGH- 189

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              A  +   Y+E  +     DF DL++   ++L+       +  +  +   +IL+DE Q
Sbjct: 190 ---AVAIYRAYQERLRALNAADFGDLLLFMTEILRS---RPEVLSQYHRAFRYILVDEYQ 243

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+L+Q+  +R L +         +  + +  VGD+ QSIYS+ GAE + +LR ++    
Sbjct: 244 DTNLVQYLWLRLLAQ------GRQNGDQNICCVGDDDQSIYSWRGAEVENILRFEKDFP- 296

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     ++ L  ++RSTA IL     + +  E   G +                  
Sbjct: 297 -------GAHVVRLESNYRSTAPILGAAAGLIAHNEGRLGKTLRPGR------------- 336

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                        +    ++    S +DS  +       AR +   I             
Sbjct: 337 -------------ANAEGEKVDVISLWDSDEE-------ARMVGDRIETARRNRHPL--- 373

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   +I VLVR    T         L     +           +   I+D +A  R
Sbjct: 374 -------SEIAVLVRAGFQTRSFEERLITL----GVPYRVIGGLRFYERAEIRDAIAYAR 422

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGIS 479
            +    DDL+F  ++  P     E  +  +  +         E  +      K       
Sbjct: 423 LLAQPSDDLAFERIVNVPRRGVGEVALRGLHERARADSVPLLEAASRQLADGKLRGKVKE 482

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
                ++ +     +            +L      + +      E    ++ L E L   
Sbjct: 483 GIAAFLQGLESWRRMLGSEGHVATMATMLDESGYTEMWKQDKSPEAPGRLENLKELLRAM 542

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              +         L   L+     ++    A  ++V +M++H AKGLE  +VFL      
Sbjct: 543 AEFD--------ALPGFLDHVSLVMENEQDAGDDKVSLMSLHAAKGLEFDMVFLPGWEEG 594

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H+                                  +      + EE  RL YVG+T
Sbjct: 595 LFPHQR--------------------------------ALDEGGLKSLEEERRLAYVGLT 622

Query: 657 RASDQLIICKHSNTS---NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           RA  + +I   +N     N + +    + + +       +    ++    +        +
Sbjct: 623 RARQKAVISHAANRRIYANWQSAIPSRFIEELPPDCIQSQGSAVMEREQRLRGGFGAGVQ 682

Query: 714 WSTHHPENTPLEREETIKQLMDEQ 737
           +      + P      +++  ++ 
Sbjct: 683 FPMLATRHAPRAAAPRVREAWEQP 706


>gi|212212385|ref|YP_002303321.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212]
 gi|212010795|gb|ACJ18176.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212]
          Length = 1110

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 148/910 (16%), Positives = 304/910 (33%), Gaps = 138/910 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRD 112
               + +  +++ FLT++   +K +          ++  ++  DL  +L K+ ++     +
Sbjct: 274  DEADLWRGIATLFLTKEGLWRKKLDKNDGFPVEDKKHKQRMKDLLSQLNKN-EKLRLALN 332

Query: 113  RFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                      T          +++   L A      ++   +DF ++ +     L   + 
Sbjct: 333  EVKNCPPIAYTEKQWNIIHGLVSILPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQ 392

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             +    ++D++I H+LIDE QDTS+IQ+ +I  L   +          RTLF VGD  QS
Sbjct: 393  PSDYALQLDEQIQHLLIDEFQDTSIIQFHLIEKLITGWQPKDG-----RTLFLVGDPMQS 447

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  AE    L+ K            + + + L  +FRS  +++   ++ F      +
Sbjct: 448  IYRFRQAEVGLFLQVKNE-----GLGEIQLTPLTLRNNFRSQKNLIDWFNQTFEPTFPKE 502

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              S   + +  H                     ++  N +  ++ S  ++     +A   
Sbjct: 503  ENSHLGSISYSH-----------------SFATNNSINQKNINFYSLLNA-----NALNE 540

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +I   I      +             K I +LVR R     IT   R       I   
Sbjct: 541  ATQIVKIIQGCRSENPE-----------KTIAILVRSRSQLIEITPALRS----ADIPFH 585

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
              +   L   + I+DL++L R +    D ++++ +L++P    +  D+  +    ++   
Sbjct: 586  AVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYANDKPI 645

Query: 466  VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                          + G ++   +   +              +   I  A  G     + 
Sbjct: 646  WVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGGPACLSNS 705

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                      + L         +  +L+ L  +L Q    I        N ++IMT+H A
Sbjct: 706  TELMNTQAYFQLLETL-----ENDFTLERLTQKLNQLYAQIDTDA---KNPIQIMTIHKA 757

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLIK 637
            KGLE   V L     +  S  H   + +           I  P    S+  + + + L +
Sbjct: 758  KGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKR 817

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDE 693
              K+ T  E  RLLYV  TRA +   +    N  +     K   + ++ ++++       
Sbjct: 818  IEKEKTTNEITRLLYVAATRAKESFHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQEAF 877

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                I   +++   +                   + +++L  +   P  L +    +   
Sbjct: 878  EQSIIIFDDTLPSQKGG----------------LKLLRRLTSDWAPPFILKTLPSPESKP 921

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----Y 808
                 P++                     G++IH+ L+ I                   +
Sbjct: 922  LTPFTPASSK-----------------RLGIVIHETLERIANEGLESWDKERIENNKSFW 964

Query: 809  CTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKD 861
              +  +L  + E        ++ ++++ L +      +S      SE  ++      +  
Sbjct: 965  QRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPIT----LVEDK 1020

Query: 862  IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKILKDSYP 916
             I    ID   I +    +I +YK+     + ++         H AQL  Y         
Sbjct: 1021 KIKHFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSVHEAQLQQYANAFHALDS 1080

Query: 917  NKSLVCLLIY 926
             + +   L +
Sbjct: 1081 -RPIKLGLYF 1089


>gi|77359094|ref|YP_338669.1| DNA-dependent helicase II [Pseudoalteromonas haloplanktis TAC125]
 gi|76874005|emb|CAI85226.1| DNA-dependent ATPase I and helicase II; highly similar to
           PSHA_1_2804 [Pseudoalteromonas haloplanktis TAC125]
          Length = 721

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/585 (17%), Positives = 201/585 (34%), Gaps = 121/585 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A Y+EA  +  ++DF ++++ + ++LK       +     Q   H+L+DE QD
Sbjct: 167 QMMLRVYAAYQEACDRAGLVDFAEILLRSYEVLKNNPT---LLRHYQQRFAHMLVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ+  ++ L  D            ++  VGD+ QSIY + GA+ + + R        
Sbjct: 224 TNTIQYAWLKLLAGD----------SNSIMIVGDDDQSIYGWRGAKIENIKRFLTDFS-- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RSTA IL   + +        G S                   
Sbjct: 272 -------AETIRLEQNYRSTATILKASNALIQNNSERMGKS------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +  S  + F+ L +       AR ++  + + +          
Sbjct: 306 --LW-------TDGNEGEPISIYAAFNELDE-------ARFVSSKLRSWLNAGNAL---- 345

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 +D  +L R    + ++            +           +   IKD ++  R 
Sbjct: 346 ------QDAAILYRSNAQSRVLEEAM----LQEGLKYRIYGGMRFFERQEIKDALSYLRI 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISK 480
           I +++DD +F  ++ +P     +  +  I    R E+  ++         Q  +      
Sbjct: 396 IGNRQDDAAFERVINTPARGIGDKTLSHIRDCARAESLPLWYAAKAIVEQQHLSGRASGA 455

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
               ++ +  +       + H+    ++        + +  G +    ++ L+E ++   
Sbjct: 456 VSKFVELVEHIEDKISDLTLHEQAKYVIQTSGLMAMYQAEKGEKGRARVENLEELISACD 515

Query: 538 RNE----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           + E    +   S LQ  ++               + + V++MT+H+AKGLE P+VF+V  
Sbjct: 516 QYELPEEEEYSSPLQGFLAHTSLESGE--GQAEEHEDAVQMMTLHSAKGLEFPLVFMVGV 573

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F  +                                      +    EE  RL YV
Sbjct: 574 EEGMFPSQQSN----------------------------------EESGRLEEERRLCYV 599

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           GMTRA D+L I    +     +    T    + +   +     +I
Sbjct: 600 GMTRAMDKLYISHAESRRLYGQEKYHTPSRFLREIPEDCVEEIRI 644


>gi|257456971|ref|ZP_05622152.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580]
 gi|257445680|gb|EEV20742.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580]
          Length = 661

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/581 (17%), Positives = 177/581 (30%), Gaps = 121/581 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + L   Y+   K    +DF+DLI+    L  +      +         ++++DE QD
Sbjct: 156 AVYRPLYNEYQAGLKLFNAVDFDDLIMLPIKLFTEHPD---VLAVYKNRYRYVMVDEFQD 212

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS+ Q++++  + +D             +  VGD+ QSIYS+ GA  + +   ++     
Sbjct: 213 TSIQQYQMMHLIADD------------NVCVVGDDDQSIYSWRGANYENIRLFEKDFPHL 260

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I+L  ++RST  IL   + V S   N +  +                   
Sbjct: 261 VE--------IKLEQNYRSTGTILAAANGVISHNTNRKEKA------------------- 293

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +        +   +       A  IA TI          +   
Sbjct: 294 --LW-------SGNGSGKPIEIFIPENEAAE-------ADFIADTI---------LTEKM 328

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +      D  VL+R       I         D  I    +          IKD+++  R 
Sbjct: 329 RENRSYADFGVLIRTNGLGRAIEEAF----LDANIPYRMSGGTSFFQRKEIKDIISYLRV 384

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQ---- 482
           I + +DD++ + ++ +P     +  +  +      +  ++   I          F+    
Sbjct: 385 IANPDDDINLLRIINTPRRGIGKKTLEVLSAIATEKDCSIRMAIHALLERPPDDFREKSL 444

Query: 483 ----HVIKYIHELIHIAQF-----CSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDE 531
                 ++ I                       I       Q+F             ++ 
Sbjct: 445 ADLEEFVELISSERKQLLSGKGLANKVRKLVERIQYFDYLTQEFQKNEKAARFKFLNIES 504

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFL 590
            L      E N  +    L + L +     +      +  EV IMT+H AKGLE PVVF+
Sbjct: 505 LLQSIDTWETNPDNFDPSLYTYLNRITLLSRDDQNEEDTGEVNIMTIHAAKGLEFPVVFI 564

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 +  H                                            EE  RL
Sbjct: 565 AGAEEGIIPHARSM---------------------------------EENAGDVEEERRL 591

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            YV +TRA D+LII        +    + +    + +    
Sbjct: 592 FYVAITRARDKLIITSCRTRRRQAGLLECSPSPFLEEIPAE 632


>gi|238750684|ref|ZP_04612183.1| DNA helicase II [Yersinia rohdei ATCC 43380]
 gi|238711074|gb|EEQ03293.1| DNA helicase II [Yersinia rohdei ATCC 43380]
          Length = 720

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/552 (19%), Positives = 187/552 (33%), Gaps = 116/552 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRLLAGD----------RANVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST++ILT  + + +  +   G +                     LW
Sbjct: 273 --GAETIRLEQNYRSTSNILTAANALIAHNDGRMGKN---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S    F+ L +       AR +   I                  
Sbjct: 310 -------TEGAEGEPISLYCAFNELDE-------ARFVVSRIKAWQDNGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           D   IKD +A  R I ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGGQRFFDRQEIKDALAYLRMISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++  +             S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQSTRALLQEKVLAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
           ++ +  L H       H     ++        +    G +    ++ L+E +N T +   
Sbjct: 462 VELVDSLAHETADMPLHIQTDRVIRDSGLWSMYEQEKGEKGQARVENLEELVNATRQYSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +    A  + V++MT+H+AKGLE P VF+V     +F 
Sbjct: 522 QDEDQDLTPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGVTRAM 607

Query: 660 DQLIICKHSNTS 671
            +L +C   +  
Sbjct: 608 QKLTLCYAESRR 619


>gi|254503334|ref|ZP_05115485.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11]
 gi|222439405|gb|EEE46084.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11]
          Length = 822

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/561 (18%), Positives = 183/561 (32%), Gaps = 114/561 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y++        DF DL+++   L K       +     +   ++L+DE QDT++
Sbjct: 226 RKLYQEYQDRLSILNAADFGDLLLHVITLFKT---RTDVLADYQRRFRYMLVDEYQDTNI 282

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +              +  VGD+ QSIY + GAE   +LR +         
Sbjct: 283 AQYMWLRLLAQ----------GNPNVCCVGDDDQSIYGWRGAEVDNILRFEHDF------ 326

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +   +I L  ++RST+ IL     + S  E   G +  +                   
Sbjct: 327 --KGAEVIRLERNYRSTSHILAAASHLISFNEGRLGKTLFTDFH---------------- 368

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                     + +    S  S +DS  +       AR I   I  +              
Sbjct: 369 ----------EPDHDLVSVASVWDSEEE-------ARTIGDEIEALQTKGHAL------- 404

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               ++ VLVR              L     ++          + + I+D MA  R ++ 
Sbjct: 405 ---NEMAVLVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDAMAYFRCVMQ 457

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++ +P     +  +  +    R E   + +        ++      +  + 
Sbjct: 458 PADDLAFERIVNTPKRGLGDATLKLVHELARAERIPLMQAASQLIDSEELKPKPRNSLKT 517

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           V+                D   +IL      + +      E    LD         E+  
Sbjct: 518 VLDNFERWRRQLDSMKHTDLAEIILDESGYTEMWRQDRSAEAPGRLDNLKELIRSMEE-- 575

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               + +   LE     + R  +   + V IMT+H+AKGLE   VFL      +F H+  
Sbjct: 576 ---FESMAGFLEHISLVMDRDSADAQDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQR- 631

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
                                           +    ++  EE  RL YVG+TRA  +  
Sbjct: 632 -------------------------------ALDESGRAGLEEERRLAYVGVTRAKKRAK 660

Query: 662 LIICKHSNTSNEKKSNQRTWY 682
           L    +     + +S+  + +
Sbjct: 661 LYFASNRRIHGQWQSSIPSRF 681


>gi|91212215|ref|YP_542201.1| exonuclease V subunit beta [Escherichia coli UTI89]
 gi|91073789|gb|ABE08670.1| exodeoxyribonuclease V beta chain [Escherichia coli UTI89]
          Length = 1183

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 132/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 218  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 275

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 276  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 334

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 335  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 393

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 394  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 445

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 446  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 489

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 490  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQICDWLQAGQRGEALLMN 545

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 546  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 602

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 603  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 654

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 655  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 708

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 709  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 768

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 769  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 815

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 816  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCNDDIAWQTAQI 875

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 876  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 935

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          +  +    
Sbjct: 936  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPID-PNWVQEKLELGG--FEPQWELV 992

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      +      D   E+     I+ P                   
Sbjct: 993  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1052

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1053 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1112

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1113 QYQLYTLALHR 1123


>gi|56696067|ref|YP_166421.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3]
 gi|56677804|gb|AAV94470.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3]
          Length = 779

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 110/664 (16%), Positives = 189/664 (28%), Gaps = 139/664 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+   ++   +DF DL+++   + +       +  +  +   ++L+DE QDT++ 
Sbjct: 176 ELYAQYQTRLRELNAVDFGDLLLHMVTIFQTHPD---VLEQYQRWFRYVLVDEYQDTNIA 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 233 QYLWLRLLAG----------GHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V    E   G                      +LW
Sbjct: 277 --GAHVVRLEQNYRSTPHILAAASNVIRGNEGRLGK---------------------ELW 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++     ++D   +       AR I   I  M G          R I
Sbjct: 314 -------TDAQEGEKVRLIGHWDGEEE-------ARWIGEEIEAMQGG-----TRGVRPI 354

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              ++ +LVR                    +           + + I+D MA  R + S 
Sbjct: 355 SLDEMAILVRAAHQMRAFEDRF----LTIGLPYKVIGGPRFYERMEIRDAMAYFRLVTSP 410

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
           EDDL+F  ++ +P     +     I    R    ++ E              G      +
Sbjct: 411 EDDLAFERIVNTPKRGLGDKAQQAIRAVARENGVSLVEGARIAVENGLIKGKGGKALGEL 470

Query: 485 IKYIHELIHI------------------------AQFCSPHDFFTLILGAKKGRQQFISR 520
              +     +                        A   S  +   +IL        + + 
Sbjct: 471 TDGLARWAALTRGPRIEIDDDSVIEDGAAPIQFGAPEMSHIELAQVILDESGYTAMWQND 530

Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
              E    ++ L E +N     E         L   LE     +     +   +V IMT+
Sbjct: 531 KTPEAPGRLENLKELVNQLDNFEN--------LQGFLEHVSLVMDNEQDSGGAKVSIMTL 582

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE P VFL      +F  +                                  + 
Sbjct: 583 HAAKGLEFPAVFLPGWEDGLFPSQRS--------------------------------MD 610

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA +   I   +N     +         + +   +   V  
Sbjct: 611 ESGLKGLEEERRLAYVGITRAEEVCTISFAANRRVFGQWQNALPSRFIDELPEDHVEVLT 670

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
                            +           +    +         +       D+      
Sbjct: 671 PPGLYGGGLSSPGIESRAAAADGYNSPGWKRLQARQGQHGLSQPRESRNTVIDLAAVASF 730

Query: 758 NPST 761
             S 
Sbjct: 731 TLSA 734


>gi|294635091|ref|ZP_06713603.1| exodeoxyribonuclease V, beta subunit [Edwardsiella tarda ATCC 23685]
 gi|291091513|gb|EFE24074.1| exodeoxyribonuclease V, beta subunit [Edwardsiella tarda ATCC 23685]
          Length = 1186

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 130/971 (13%), Positives = 277/971 (28%), Gaps = 141/971 (14%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLS 70
            +     K  W     QV+ +     +   + +   L K    +   +Q + ++ +     
Sbjct: 226  ARIEALKAAWREQGGQVAALIADSGVDKRSYSSRHLPKWLDEMAAWAQQETLDYQLPGSI 285

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              F       +    +                 +       +      +    +      
Sbjct: 286  ERFAQATLEQKTTKGSAP---------------RHALFAAVEALLAEPLSLRDVLLAQAL 330

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              +    ++ K++   L F+DL+      L        +   I Q     +IDE QDT  
Sbjct: 331  VAVRESVQQEKRRRAELGFDDLLSRLAQAL-DAQAGEALAAAIRQRYPVAMIDEFQDTDP 389

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q+ +   +            +   L  +GD KQ+IY+F GA+    L+ +   +     
Sbjct: 390  QQYRIFHHIYG------GAAQAETALLLIGDPKQAIYAFRGADIFTYLQARAAVEA---- 439

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                     L  ++RS   ++  V+++FS+        E     +            +  
Sbjct: 440  ------CYTLGTNWRSAPGMVQAVNRLFSLSPAPFLFDEIPFLPVAAAPKNAHHRLLI-- 491

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF------- 363
                    D       + W        Q+    ++A+R A  I + +             
Sbjct: 492  --------DDVAQAALDLWLYDVPGCSQQEYLHVMAQRCATQIRDWLSAGQRGEARLIGE 543

Query: 364  -SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
              + + R + A D+ +LVR R +  ++      L      SV  ++R  +      +DL+
Sbjct: 544  DESAEGRPLCAADMTILVRSRHEATVMRDALSALNIP---SVYLSNRDSVFSTPEARDLL 600

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L + IL+     +    L   L   S  ++  +       + V +    +        +
Sbjct: 601  WLLQAILAPAQSRTLRSALAVGLLGLSAAELDALNQDERRWDAVVDEFDDYRRHWQR--R 658

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             V+  + ELI   +          +L    G ++            L E L    +  ++
Sbjct: 659  GVLPMLRELIGRRR------LAENLLATSGGERRLTDVL------HLGELLQEAAQQLES 706

Query: 543  SYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              + ++ L  +++       + +    ++ + V+++T+H +KGLE PVVFL    +    
Sbjct: 707  EPALVRWLAQQIDSPQPQAESQQMRLESDRHLVQVVTIHKSKGLEFPVVFLPFVATFRRQ 766

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             +                      Q+          +    +    E  RLLYVG+TR+ 
Sbjct: 767  RQ-------------GLYHESHSLQAVWDLCADEQALARADQERLAEDLRLLYVGVTRSI 813

Query: 660  DQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD-EWIAY 712
                     ++  +     E   +      ++      D       L    + D      
Sbjct: 814  YYCALGIAPLVLGNRKKQGESDLHHSALGYLLQRGDACDAEGLHQALQALQDDDIRLTRL 873

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLF-------SPIKNDINEPYILNPSTIDTK 765
                      PL    T+      + +                +      +L    ID  
Sbjct: 874  APVDVEAWQGPLATARTLCAKAFNRSLRDTWRVTSYSALQQHGSSGRYLELLPHLDIDAA 933

Query: 766  GKTNLES-----LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
            G+            S  +    G  +H LL+ +                 +         
Sbjct: 934  GEHRAPPAPSLDAHSFPRGAAPGTFLHSLLEALDFTQPIDELWLAERCQEQGLAPEWVPA 993

Query: 821  YKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCPKK----------------- 860
              + L  I +   +     ++         E+     I  P                   
Sbjct: 994  LAHWLTQILQAPLDAQGVSLSQLAPTHCQPELQFYLPIARPLDPARLDEVIRRHDALSAQ 1053

Query: 861  ---------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                     D ++ G ID +   +   ++ +YK++                  + + +  
Sbjct: 1054 SPPLAFNAVDGMLKGFIDLVFCHRGRYYLLDYKSNWLGETGEAYSDAAMAAAMVSHRYDL 1113

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1114 QYQLYSLALHR 1124


>gi|71082723|ref|YP_265442.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061836|gb|AAZ20839.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062]
          Length = 678

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 105/550 (19%), Positives = 185/550 (33%), Gaps = 122/550 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              + L   Y++        DF DLI++   +L+K      IR        +IL+DE QD
Sbjct: 170 RTIRPLYKIYQQKLLDLNACDFGDLILHVVKILEKNHD---IRNIYSNNFKYILVDEYQD 226

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ   +  L+E            + L  VGD+ QSIYS+ GAE K  L   ++ +  
Sbjct: 227 TNYIQSRWLNLLSE----------KHKNLCCVGDDDQSIYSWRGAEIKNFLEFDQVYKNS 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RS+ +IL+V   + +  +N  G +  +T           +   
Sbjct: 277 --------KVIRLEENYRSSQNILSVASNLIANNQNRVGKTLKTTM---------EEGDL 319

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V+L      + +                          A  ++  I   +          
Sbjct: 320 VKLNCFKNGKDE--------------------------AIGVSDEIEKKLK--------- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +     +I +LVR    T               +           +   IKD +A  R 
Sbjct: 345 -KKYSFNNIAILVRAIFQTREFEERF----LKIGLPYRILGGTKFYERAEIKDCVAYLRL 399

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------ 480
           I   +DDL+F  ++ +P     E  I  I    +    ++    +K     + K      
Sbjct: 400 IHQPKDDLAFDRIVNNPKRAIGESTIKLIHEFSKTNAVSLEIASKKLIEENLIKPKTKIG 459

Query: 481 FQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
               +  + +  +    +  +      L+L          ++   E    ++ + E L+ 
Sbjct: 460 LSSFLFLMDKWRNDINIKKINHVKLLQLVLDESGYSSMLKNKKDLENENRLENIKELLSA 519

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +         L + LE            +  +V +MT+H +KGLE  VVFL     
Sbjct: 520 MKDFDN--------LENFLEHVALATSVDQDWDGEKVNMMTMHGSKGLEFDVVFLPGWEE 571

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F H+                                  I+   ++  EE  RL YVG+
Sbjct: 572 GLFPHQKS--------------------------------IEEKGQNGLEEERRLAYVGI 599

Query: 656 TRASDQLIIC 665
           TRA  + +I 
Sbjct: 600 TRAKKKALIS 609


>gi|168231088|ref|ZP_02656146.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
 gi|194468697|ref|ZP_03074681.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|194455061|gb|EDX43900.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|205334551|gb|EDZ21315.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
          Length = 1181

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 122/876 (13%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          ++     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSMAQELIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPINPQWVQEKLELSGFETRWQPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|261392291|emb|CAX49817.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 8013]
 gi|325134572|gb|EGC57216.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M13399]
          Length = 671

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 113/611 (18%), Positives = 204/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T   A       L A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARLYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV             S              G  ++ + V  Q                 
Sbjct: 286 NKVIENNPKLFTKKLWSQF------------GEGEIVKVVACQ----------------- 316

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 S    A  +   I    ++G D           Q  D  VL R      +    
Sbjct: 317 ------SEQHEADWVVSQIVKQKLVGGDKT---------QYADFAVLYRGNHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +   
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALALLNNTNRQHLQTFMDMFGSYRAKAETGEAGELIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L     +   +       G      + + +++  R       ++ EL   +       
Sbjct: 478 NLLEEIDYKNHLMQNEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTIALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V++ T+H +KGLE P VFLV     V  H                     
Sbjct: 538 GK-SEEEVDAVKLSTLHASKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCIKRKKQGIWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|197116476|ref|YP_002136903.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem]
 gi|197085836|gb|ACH37107.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem]
          Length = 732

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 101/695 (14%), Positives = 214/695 (30%), Gaps = 145/695 (20%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--------KKAQTLQQASQTQCIEERFS 67
           +              +++   L  E G P           K A  +++       +    
Sbjct: 22  LLVLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKAAGEMRERLAHMLGDGELP 81

Query: 68  LLSSFFLTQKFTPQKNII------------TQEINKKSPDLKEKL---------KKSQDE 106
           L+S+F  T     +  I              ++  K   D   +L         K     
Sbjct: 82  LISTFHSTCARILRSEIRHLGYDSNFAIYDDRDCEKLLKDCAAELNLDEKRYPAKALAGA 141

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             + +++        +          +   Y+E  K+   +DF DL++         +  
Sbjct: 142 LDEFKNQGLAPDDVPTDSPYQATLARVYRCYQERLKRCNAVDFGDLLLLAVQ---LLEQV 198

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R K  Q    I++DE QDT+ +Q+ +++ L  +           + L  VGD+ QSI
Sbjct: 199 KEVRDKYLQRYRWIMVDEYQDTNPVQYRLVQLLAGE----------RKNLCVVGDDDQSI 248

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  ++              +++L  ++RST  IL     V       + 
Sbjct: 249 YGWRGADIRNILEFEKDFP--------GVKVVKLEQNYRSTKTILDGAWNVVQKNRGRKP 300

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW           + ++  + +  +   +       A
Sbjct: 301 KR---------------------LW-------TDNPDGERIVYRTLPNEWEE-------A 325

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R +       +                 ++ V  R    +  +            ++   
Sbjct: 326 RTVCRETERFLDEGGDL----------SEVAVFYRTNAQSRAVEDAM----VSAGVAYHM 371

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465
                    L +KD++A  + + +  DD++   ++ +P        + ++      +   
Sbjct: 372 VGGVRFYARLEVKDILAYLKVLDNPSDDVALKRIINTPPRGIGNTTVQRLSEFAAEKGIP 431

Query: 466 VYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           +Y+ + + A           K     + I      A+     +  + I+       +  +
Sbjct: 432 LYDAMLEGAFGPLLSVAAKGKVAAFAQEIDGYKEKAEQMPLSELTSTIIYESGYFARLKA 491

Query: 520 ---RFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                  E I+ L E +      E       L + + ++      +++      +   +M
Sbjct: 492 LGSDEAQERIENLQELVTAMQAYESGPGEKGLADFLEQVALVS-DLEQEGDGKKSSATLM 550

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P+VF++    ++F H                                  +
Sbjct: 551 TLHSAKGLEFPLVFIIGMEERLFPH----------------------------------V 576

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                 +  EE  RL YVGMTRA  +L +      
Sbjct: 577 RALEDPAQMEEERRLCYVGMTRAKKRLFLLNVRRR 611


>gi|218559832|ref|YP_002392745.1| exonuclease V subunit beta [Escherichia coli S88]
 gi|218366601|emb|CAR04355.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli S88]
 gi|294491122|gb|ADE89878.1| exodeoxyribonuclease V, beta subunit [Escherichia coli IHE3034]
 gi|315289392|gb|EFU48787.1| exodeoxyribonuclease V, beta subunit [Escherichia coli MS 110-3]
 gi|323951722|gb|EGB47597.1| exodeoxyribonuclease V [Escherichia coli H252]
          Length = 1180

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 132/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQICDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCNDDIAWQTAQI 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          +  +    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPID-PNWVQEKLELGG--FEPQWELV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      +      D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|15892547|ref|NP_360261.1| DNA helicase II [Rickettsia conorii str. Malish 7]
 gi|81595570|sp|Q92HZ6|UVRD_RICCN RecName: Full=Probable DNA helicase II homolog
 gi|15619709|gb|AAL03162.1| DNA helicase II [Rickettsia conorii str. Malish 7]
          Length = 653

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 111/567 (19%), Positives = 191/567 (33%), Gaps = 121/567 (21%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +  + L    +AK +   Y++    + VLDF DL++  N+L  K    + I     ++
Sbjct: 159 LSVSDTNLPLQRVAKLVYEEYQKNLLISNVLDFGDLLLYNNELFIKN---SEILRYYQEK 215

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +ILIDE QDT+++Q+   R L   +          + +  VGD+ QSIY + GAE   
Sbjct: 216 YRYILIDEYQDTNVVQYLWARMLASLY----------KNICCVGDDDQSIYGWRGAEVGN 265

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +LR ++             +II+L  ++RST  IL     V +  +N  G +        
Sbjct: 266 ILRFEKDF--------AGATIIKLEQNYRSTLPILAAASNVINNNKNRHGKT-------- 309

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW     + + +       W+   +           AR IA  I  +
Sbjct: 310 -------------LW---TDRENGEKIKIISCWSDKEE-----------ARYIAGEIDKL 342

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +               A +I +LVR    T            +  +           + +
Sbjct: 343 VRE---------NRYNAGNIAILVRAGFQTRSFEEAF----INSAMPYKIIGGLRFYERM 389

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN 475
            I+D++A  R  L+Q D+L+   ++  P        + KI         + +  I++   
Sbjct: 390 EIRDVLAYIRISLNQNDNLALERIINVPKRAIGAASLNKIRGYALERNISNFAAIKEMLE 449

Query: 476 CGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
            G  K       + ++  I          +P +    IL      +        E    I
Sbjct: 450 IGEIKAKSYETLKDLVTKIDNWYERFSIDAPINVVKAILDDSGYLEMLQEEKTEEAFGRI 509

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLE 584
           + ++E L               ++   +E     ++           V IMT+H AKGLE
Sbjct: 510 ENINEMLRAIAEF--------NDVHDFIEHSSLVMENEVLETNYGGSVTIMTLHAAKGLE 561

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             VVFL      VF  +          L ++                             
Sbjct: 562 FDVVFLPGWEEGVFPSQRSLDEEGEKGLEEE----------------------------- 592

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTS 671
               R+ YVG+TRA   L I    +  
Sbjct: 593 ---RRIAYVGITRAKKDLYITHAESRK 616


>gi|332087360|gb|EGI92488.1| exodeoxyribonuclease V, beta subunit [Shigella boydii 5216-82]
          Length = 1180

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 125/875 (14%), Positives = 274/875 (31%), Gaps = 129/875 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------YHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFIFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKIL 911
            +                    + +  Q  +Y   L
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLAL 1118


>gi|205353934|ref|YP_002227735.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 287/91]
 gi|205273715|emb|CAR38708.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
            Gallinarum str. 287/91]
 gi|326629048|gb|EGE35391.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 9]
          Length = 1181

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHNLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQAAMATAMQAHRYDLQYQLYTLALHR 1120


>gi|198242178|ref|YP_002216966.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Dublin str. CT_02021853]
 gi|207858257|ref|YP_002244908.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Enteritidis str. P125109]
 gi|197936694|gb|ACH74027.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Dublin str. CT_02021853]
 gi|206710060|emb|CAR34415.1| exonuclease V subunit [Salmonella enterica subsp. enterica serovar
            Enteritidis str. P125109]
 gi|326624733|gb|EGE31078.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Dublin str. 3246]
          Length = 1181

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHNLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQAAMATAMQAHRYDLQYQLYTLALHR 1120


>gi|15612436|ref|NP_224089.1| putative ATP-dependent DNA helicase [Helicobacter pylori J99]
 gi|4155998|gb|AAD06960.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
          Length = 681

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/572 (16%), Positives = 182/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    +  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLCLSLKILQDNE---KLAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKQLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              I++L  ++RS+A+IL   + + S  ++    +  S                 +    
Sbjct: 257 GAKIVKLETNYRSSAEILACANSLISHNQHRHIKTLQSFKGSHKSVICKEYPTQKE---- 312

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                           +  +AY I  ++       N        
Sbjct: 313 -------------------------------ESLDVAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +AL   +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALALMHVVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQHVIK 486
                 +L  P     +     I +    E   + E         K         +    
Sbjct: 388 RFFIKRVLNKPPRGLGKITQEWIFSLLDEEGLNLEEALKIGAFKDKLNPKNEYALKKFTA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVEKFCERFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +    +    + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESALDVHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA ++L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEELQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQLLQQDKPP 619


>gi|238027765|ref|YP_002911996.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1]
 gi|237876959|gb|ACR29292.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1]
          Length = 789

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 111/736 (15%), Positives = 214/736 (29%), Gaps = 158/736 (21%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K  Q      +++       ++  +   +   L   Y++  ++  V+DF +L++   +LL
Sbjct: 138 KNVQYFINNAKEQGLRPDKVEANDSFNRMFVQLYQAYDQQCQREGVVDFPELLLRCFELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                   +R        HIL+DE QDT+ +Q+  ++ L  +             +FAVG
Sbjct: 198 SYNPA---LRAHYQARFRHILVDEFQDTNKLQYAWLKLLAGE----------QNAIFAVG 244

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   +   + R        ++I+L  ++RS  +IL   + + + 
Sbjct: 245 DDDQSIYAFRGANVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANHLIAH 296

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +  +           G    V+++E      +                     
Sbjct: 297 NSRRLGKNLRTD---------AGHGEPVRVYEAATDSQE--------------------- 326

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   I ++I             +   ++ VL R    +  I           
Sbjct: 327 -----AGWIVEEIRSLINGG----------MARSEVAVLYRSNAQSRAIEHTL----MTA 367

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQ 459
            I+          +   IK  +A  R I +  DD +F  ++  P        I ++    
Sbjct: 368 GIAYRVYGGLRFFERQEIKHALAYLRLIDNPSDDTAFARVVNFPTRGIGARSIEQLADAA 427

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518
           R     +   I        +        I +L    +  S  +    ++ A      +  
Sbjct: 428 RLHNCAMAAAIPYVTGKAGTSLGAFANLIAKLRAETRQMSLPEMVEYVVRASGLADFYQG 487

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549
            R G + ++ L E +N            L                               
Sbjct: 488 EREGQDRLENLQELVNAAAAFVSEEGYGLDTPARSIPLRPGASAAPELAAGGDAAGAVLA 547

Query: 550 ----------------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                           L   L             A  + V++MTVH AKGLE   VF+  
Sbjct: 548 PAAPDDPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITG 607

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F H++                                    L+    EE  RL+Y
Sbjct: 608 LEEGLFPHENS----------------------------------ALETDGLEEERRLMY 633

Query: 653 VGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYD---SFHNDERVKKIKLTNSINK 706
           V +TRA ++L +    +       + + +  ++D +      +   +     +     + 
Sbjct: 634 VAITRAKERLYLSFAQSRLLHGQTRYNIRSRFFDELPQQVLKWLTPQVEAGSRWGGRADN 693

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             W    ++                 +               N       +  +      
Sbjct: 694 AGWGRNWFARPGGAAGGTRDAVVDAAVTAPLPAFANAQRAAGNGFKVGQPVFHTKFGEGT 753

Query: 767 KTNLESLLSDNQTFNR 782
            T LE   +D +   R
Sbjct: 754 VTALEGEGADAKAQVR 769


>gi|269127954|ref|YP_003301324.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268312912|gb|ACY99286.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 1128

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 151/1104 (13%), Positives = 285/1104 (25%), Gaps = 232/1104 (21%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
              +  + +  +        VS  + Y +                L+   +       + L
Sbjct: 92   PQDELDRLGGEAALDGEPAVSTYHSYAARLF-----GDHALRAALEPTMRLISPAMAWQL 146

Query: 69   LSSFFLTQKF-----TPQKNIITQEINKKSPDLKEKLK----------KSQDEFIKIRDR 113
             +               + + + + +   S +L E L+          + + +F  +  R
Sbjct: 147  AARVVDDYDGAMDGIDWRPDTVVRAVLDLSGELAEHLRTPEDVREIGRRLRAQFDALPGR 206

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                K   +T         L   Y+ AK +  VLD+ D +     + +       I    
Sbjct: 207  RGAAKNVLATQEIRERLLPLVEAYQRAKIEREVLDYGDQVALAARIARDHPDVGMI---E 263

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
                  +L+DE QDTS  Q  ++ SL                + AVGD  QSIY + GA 
Sbjct: 264  RSRYAVVLLDEYQDTSHAQLVLLTSLFG----------GGHPVTAVGDPCQSIYGWRGAG 313

Query: 234  PKRVLREKRINQ------------------KRATNAGQKFSIIELPLSFRSTADILTVVD 275
               +                          +R     +      L +S+R+   IL V  
Sbjct: 314  SGNLTGFPEDFPLAPAVPSRVAAVPPPRPGRRPPRHARPAPTATLSISWRNGERILEVAA 373

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            ++    +  +  + +          R        L   V +                   
Sbjct: 374  RI---QQGLRADTANVPRLRPGEGRRGRGRVECALLPTVTA------------------- 411

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNG----KKRVIQAKDILVLVRKRKDTPLITF 391
                      A  IA  I  +   D   +       +  ++   I VLVR+R   P    
Sbjct: 412  ---------EAEHIAERIRRLRAADPELAPDGLPWDEGPLKYSHIAVLVRRRSQIPP--- 459

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
              R    +  I V       L     ++D++A  R +       S   +L  P +     
Sbjct: 460  -LRKALEERDIPVEVVGLGGLLTVPEVQDVVATLRVVHDPTAGASLARLLTGPRWRIGPR 518

Query: 452  DIFKICTQRHETETVYEY------------------------------------------ 469
            D+  +  +     +                                              
Sbjct: 519  DLVALGRRARRLASENTRDITPPPDASELRPEPAANAEETDPLRQVVIELTQETGSLVDA 578

Query: 470  ------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                     ++  G+++ + +   +  L          D    +        +  +R G 
Sbjct: 579  LDDLGDPSAYSPEGLARLRRLAAELRTLRSQVG-LPLPDLVAEVERTLGLDIEVAARSGL 637

Query: 524  E---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS---ANHNEVRIMT 576
            +       LD F+       E++   +L   ++ L+          +   +  + V+++T
Sbjct: 638  DPAGARADLDAFIETAASFAEESENPTLGAFLAYLKAAESEEFGLPAGRVSESDSVKLLT 697

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ------------ 624
            VH AKGLE PVV +              K  I PS           P+            
Sbjct: 698  VHAAKGLEWPVVVVPGLCYLPSGSGRPVKGSIFPSPPQQSTRWTDNPRLLPFELRGDYEK 757

Query: 625  ------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                  +      +             E  RL YV +TRAS  LI   H   +  +  + 
Sbjct: 758  GNLPRLNGLTKADLDRFKDECADRDLREERRLAYVAVTRASHLLIATGHRWGATARPLHP 817

Query: 679  RTWYDMVYDSFH-----------NDERVKKIKLTNSINKDEWIAYEWSTHHP-------- 719
              + + +  +               E      L        W A      +         
Sbjct: 818  SPFLEEIRQACETGAGRVVSWADPPEEGAANPLQAEAEPGRWPATPEGRRYAAIVEGAEM 877

Query: 720  -------------------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                               E          + +        +        +  P  L  S
Sbjct: 878  VRDAMVGRIAPWAGDDGLTEADRRRMTAWARDVELLLAERDRGRGGDVLQVELPAKLTVS 937

Query: 761  TIDTKGKTNLE--------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
            T+    +   E                  RG   H+ L+        +          + 
Sbjct: 938  TLVALSRDPQEVARSIRRPMPRPPAPYARRGTAFHRWLE-------SRWGQQRLLDPDEL 990

Query: 813  AKLWPAKEYKN-LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
                      + +L  + R  E           S   + +         D ++ GR+D +
Sbjct: 991  PGAADEGAADDSMLTELQRRFEESEWA------SRRPLDIEVTFETVLGDRVLRGRMDAV 1044

Query: 872  SIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVS 928
              +      + ++KT      E          QL+ Y     D    P + +     YV 
Sbjct: 1045 FTAPDGGYEVVDWKTGRPPADEDFRHA---AVQLAAYRLAWADLAGVPLEKVSAAFHYVR 1101

Query: 929  EPKVFIIPQNKLNKA-FAEISTKI 951
              +    P + L++A    +   I
Sbjct: 1102 YNRTIR-PADLLDRAGLTALLENI 1124


>gi|43297|emb|CAA25321.1| pot. DNA helicase II [Escherichia coli]
          Length = 720

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/583 (16%), Positives = 184/583 (31%), Gaps = 116/583 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE Q+T+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQNTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL   + +        G                       L
Sbjct: 273 ---GAETIRLEQNYRSTSNILNARNALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +        R +   I                 
Sbjct: 309 W-------TDGADGEPISLYCAFNELDET-------RFVVNRIKTWQDNGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---AECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +       + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAAVEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +L +          K         + +         +++ T
Sbjct: 607 MQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 649


>gi|254670269|emb|CBA05543.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha153]
 gi|325136509|gb|EGC59113.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M0579]
          Length = 671

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 113/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGDPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + + +++  R       ++ EL   +       
Sbjct: 478 NLLKEIDYENHLLASEESKAGEIKWRNVGDLVSWFARKGGEDGKNVIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|319782887|ref|YP_004142363.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168775|gb|ADV12313.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 861

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 115/557 (20%), Positives = 179/557 (32%), Gaps = 115/557 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  K     DF DL+ +   +L+       +  +  +   +IL+DE QDT+ 
Sbjct: 210 RELYKAYQERLKTLNACDFGDLLCHPIRILRANPD---VLKEYHKRFKYILVDEYQDTNT 266

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPR-------TLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            Q+  +R L +                     +  VGD+ QSIY + GAE   +LR  + 
Sbjct: 267 AQYMWLRLLAQRPQGKPGEIGRSSAETRATVNICCVGDDDQSIYGWRGAEVDNILRFDKD 326

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       +II L  ++RSTA IL     + +  E   G +  +            
Sbjct: 327 FP--------GATIIRLERNYRSTAHILGAASHLIAHNEGRFGKTLFTDR---------- 368

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                           +     + +  + +DS  +       AR I  TI          
Sbjct: 369 ----------------NDPEDGKVNVHAAWDSEEE-------ARAIGETIEAYQRQKH-- 403

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D+ +LVR              L     ++          + L I+D MA
Sbjct: 404 --------NLNDMAILVRASFQMRAFEDRFITL----GLNYRVIGGPRFYERLEIRDAMA 451

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NC 476
             R +    DDL+F  ++  P     E  I +I  T R     + E   K A        
Sbjct: 452 FFRVVAQGADDLAFERIVNVPKRGLGEATIRQIHDTARALRIPMLEAAAKLAESDELKPK 511

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
             +  + V           +     +    IL        + +    E    ++ L E +
Sbjct: 512 PRAALREVAANFERWQKALETTPHTELAETILEESGYTDMWKNDRSVEAPGRLENLKELI 571

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 E         L S LE     +    +A  + V IMT+H+AKGLE   VFL   
Sbjct: 572 RSMEEYES--------LRSFLEHVALVMDAEQNAGLDAVSIMTLHSAKGLEFETVFLPGW 623

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F H+                                  +    +S  EE  RL YV
Sbjct: 624 EEGLFPHQR--------------------------------ALDEGGRSGLEEERRLAYV 651

Query: 654 GMTRASDQLIICKHSNT 670
           G+TRA   L I   SN 
Sbjct: 652 GLTRAKKNLHIWFVSNR 668


>gi|217327692|ref|ZP_03443775.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|217320059|gb|EEC28484.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
           TW14588]
          Length = 860

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 124/859 (14%), Positives = 269/859 (31%), Gaps = 129/859 (15%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             L        +       K++   L F+D++   +  L+  +    +   I       +
Sbjct: 4   RDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAM 62

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDT   Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +
Sbjct: 63  IDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKAR 114

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                  T          L  ++RS   ++  V+K+FS  ++A    E     ++     
Sbjct: 115 SEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKN 164

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                       +      +  P  + W    +S       S +A+  A  I + +    
Sbjct: 165 QA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVSAAQIRDWLQAGQ 214

Query: 362 -----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                + +    R ++A DI VLVR R++   +      L+     SV  ++R  + + L
Sbjct: 215 RGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETL 271

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
             ++++ L + +++ E + +    L + +   +  DI  +           E+       
Sbjct: 272 EAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVE 323

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
               ++ + +    +  +    S  +    +L    G ++            + E L   
Sbjct: 324 EFDGYRQIWRKRGVMPMMRALMSARNIAENLLATAGGERRLTDIL------HISELLQEA 377

Query: 537 ---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              L +E      L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L   
Sbjct: 378 GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI 437

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            +     +                      ++    N   + +   +     E  RLLYV
Sbjct: 438 TNFRVQDQAFYHDR-------------HSFEAVLDLNAAPESVDLAEVERLAEDLRLLYV 484

Query: 654 GMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            +TR+     L +        +KK +       +       E      L   I       
Sbjct: 485 ALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDD 544

Query: 712 YEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPY 755
             W T         +       E   + +          +              D+    
Sbjct: 545 IAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRL 604

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
            ++ + + +  +    +     +  + G  +H L + +         N++          
Sbjct: 605 DVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQPVD-PNWVQEKLELGG-- 661

Query: 816 WPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK---------- 859
           + ++    L   IT +L+ P+      ++     D   E+     I+ P           
Sbjct: 662 FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEFYLPISEPLIASQLDALIR 721

Query: 860 ----------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE--------- 894
                              ++ G ID +   +   ++ +YK++                 
Sbjct: 722 QFDPLSAGCPPLEFMQARGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAA 781

Query: 895 HIPYTHIAQLSIYEKILKD 913
              + +  Q  +Y   L  
Sbjct: 782 MQAHRYDLQYQLYTLALHR 800


>gi|294666234|ref|ZP_06731487.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604007|gb|EFF47405.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 728

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/575 (17%), Positives = 191/575 (33%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 154 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 261 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 307

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR +   
Sbjct: 308 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 338 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISEQLPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 384 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARASALSLWEAAM 443

Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  I +L          +    +L     R+ +        
Sbjct: 444 LCTQQNTLAARARNALATFLSLIGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGL 503

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    V++MT
Sbjct: 504 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 563

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 564 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 589

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 590 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 624


>gi|160881547|ref|YP_001560515.1| recombination helicase AddA [Clostridium phytofermentans ISDg]
 gi|251764520|sp|A9KTE6|ADDA_CLOPH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|160430213|gb|ABX43776.1| recombination helicase AddA [Clostridium phytofermentans ISDg]
          Length = 1377

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 130/836 (15%), Positives = 279/836 (33%), Gaps = 119/836 (14%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
            +  +  + L   +     +  +      F    F     + T++    + + KE++K  +
Sbjct: 254  SDQEIIERL--LNSDAGSQHSYEEYQDAFSNITFA---RLSTKKWPDATEERKEEVKAIR 308

Query: 105  DEFIKIRDRFN--------------TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
                KI    +                K+ +  L  L+L        + +K++N ++DF 
Sbjct: 309  QMVKKILSDLSDDFFFQPMEDMLTDMRKVRRPMLVLLSLTHDFLERLDASKEENNLVDFS 368

Query: 151  DLIINTNDLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            D+     ++L        V   +  ++ ++   I+IDE QD++ +Q  ++ S+++     
Sbjct: 369  DIEHFALNILVTKEDGNLVPTKVATEMSEQFVEIMIDEYQDSNYVQEYILSSISK----- 423

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                     +F VGD KQSIY F  A P+  + +              +  I+L  +FRS
Sbjct: 424  --VTRGCPNVFMVGDVKQSIYKFRMARPELFMEKYEQYSTE----EGLYRRIDLSKNFRS 477

Query: 267  TADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC-- 322
             A++L  ++ VF         G+      ++   +        +     + S   ++   
Sbjct: 478  RAEVLDSINGVFEKIMTKAMGGIEYTKEVSLYPGAQFPEIGMDLDNTSFLFSDTKTELII 537

Query: 323  ---NPQQESWTSYFDSLP---------QESSASILARRIAYTISNMIGTDTIF------- 363
                 ++ S     D L          + S   + A+ +A  I  ++  +  F       
Sbjct: 538  LDLKEEEASIPDSMDRLDVMALEEDAIELSKRELEAKAVAMRIKQLVHGERGFSVTKRNG 597

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                 +  Q +DI++L+R              +     I    + +      L +K ++ 
Sbjct: 598  EEQDLKRCQYRDIVILLRTMSGWS---ETFTEILKQEGIPAYSDTQTGYFQTLEVKTVLN 654

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE---TVYEYIQKFA------ 474
              R + +   D     +L SP+   S + +  +  +  +     ++Y+  ++ A      
Sbjct: 655  YLRILDNPRQDAPLTAILYSPIVGLSAEQLSFLRVKPGKGAEKLSIYDAARECALNYLEI 714

Query: 475  ---------------------------------------NCGISKFQHVIKYIHELIHIA 495
                                                        K +       +L   A
Sbjct: 715  QDEVTQPEETQPVYDSIIQADLMYEKSSAEKTVSMDKNLIETGEKLKRFFATYDKLREKA 774

Query: 496  QFCSPHDFFTLILGAKKG-RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
             +   H+               +    G +  + L+  +   L  E++SY  L + I  +
Sbjct: 775  IYLPVHEIILEFFKETGYDLFVYAMPGGEQRRNNLNLLVQHALSFEESSYHGLFQFIRYI 834

Query: 555  E-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            E     +         S N N VRIM++H +KGLE PVV L   G Q  +    +K+ + 
Sbjct: 835  ERLLKFEIDYGEAGGLSENDNAVRIMSIHKSKGLEFPVVILAGMGKQFNTMDAREKIVLH 894

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                  P    +  ++K    +   + K++      E  R+LYV +TRA ++LI+   +N
Sbjct: 895  ADYGIGPECIDYQLRTKCPTLLKQVIKKNIVLDNLGEELRVLYVALTRAKEKLIMIGSAN 954

Query: 670  TSNE-----KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
             +N+     ++ +      + + +    +         ++          + +       
Sbjct: 955  DANDVFDKWRQDSTPGVTPLRFQTLAMAKDYFSFVGPAALYDSRIRVITLTPNDLLEDEY 1014

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
            E++  IK   +E      L S  +    +          + G+ +        Q  
Sbjct: 1015 EKQTDIKNKQEELNPYNFLQSFEEESDEQSDEERSDEERSDGEQSDGEQSDGEQPR 1070



 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 80/308 (25%), Gaps = 48/308 (15%)

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                 S+ ++  +     + +   +  E +  IK T S  K      +           +
Sbjct: 1059 SDGEQSDGEQPRKDLLTKLSFRYPYEHEAMLPIKTTVSELKKLSQQVDEELTETFTQVKD 1118

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
                    +DE+   K        + + P       +             + +   RG +
Sbjct: 1119 ELTKTWPQVDEELTEKYPQVEELIETSPPVKEESQMLIEPTIPKFLKEEKELRGTERGNL 1178

Query: 786  IHKLLQVIFTLPEHKRKNFIT--SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
             HK+L++I       + N     S       +            ++R  E+ +       
Sbjct: 1179 YHKILELIDFSDNKTKLNLREFVSQLANRGLIQEESISSINFERLSRFFESELYQRIQIA 1238

Query: 844  D----SYSEVSVSGKINCP----------------------------------------- 858
                  Y E      I                                            
Sbjct: 1239 YQKGYLYREQPFVIGIPVREISTQKFVRTTQAQASSILSKNEDFSHANLCSCPNSQDYEN 1298

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
               ++I G ID     +  I + +YKT        E +   +  Q+  YE+ L     +K
Sbjct: 1299 DDLVLIQGIIDVYFEEEDGIVLVDYKTDAVGELGEEELIRRYQEQIRYYERALNQLL-DK 1357

Query: 919  SLVCLLIY 926
            ++   +IY
Sbjct: 1358 TVKEKIIY 1365


>gi|291615722|ref|YP_003518464.1| UvrD [Pantoea ananatis LMG 20103]
 gi|291150752|gb|ADD75336.1| UvrD [Pantoea ananatis LMG 20103]
          Length = 723

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/580 (17%), Positives = 188/580 (32%), Gaps = 116/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +  ++IL+DE QDT+ I
Sbjct: 175 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFSNILVDEFQDTNNI 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 232 QYAWIRMLAGD----------SGKVIIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 275

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 276 --GADTIRLEQNYRSTNNILKSANALIANNNGRLGK---------------------ELW 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  S    F+ L +        R +   I   +              
Sbjct: 313 -------TDGSDGEPISVYCAFNELDES-------RFVVNRIKAWMENGNAL-------- 350

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R + ++
Sbjct: 351 --ADCAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALAYLRLMANR 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R +  T+++  ++       A    S  Q  
Sbjct: 405 NDDAAFERVVNTPTRGVGDRTLDVVRQTAREKQMTLWQATRELLQSRALAGRAASALQRF 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L         H     ++        +    G +    I+ L+E +  T +   
Sbjct: 465 CELVDSLASETVDMPLHVQTDRVIKDSGLWIMYEQEKGEKGQARIENLEELVTATRQFSY 524

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H+AKGLE   VF+V     +F 
Sbjct: 525 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 585 SQMALDEGG----------------------------------RLEEERRLAYVGVTRAM 610

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +L +          K         + +         +++
Sbjct: 611 MKLTLTYAETRRLYGKEVYHRPSRFIGELPEACIEEVRLR 650


>gi|189009944|ref|ZP_02803819.2| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|189404465|ref|ZP_02789656.2| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4501]
 gi|189003309|gb|EDU72295.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|189365388|gb|EDU83804.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4501]
          Length = 1183

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 309  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 368  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 420  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 470  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 519

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 520  TMAQVSAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 580  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 637  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMMRALMSARNIAENLLATAGGERRLT 688

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 689  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 743  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 790  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 850  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 909

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 910  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQ 969

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 970  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1026

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1027 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQARGMLKGFIDLVFRHEGRYYLLDYKS 1086

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1087 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1123


>gi|110634338|ref|YP_674546.1| ATP-dependent DNA helicase Rep [Mesorhizobium sp. BNC1]
 gi|110285322|gb|ABG63381.1| ATP-dependent DNA helicase, Rep family [Chelativorans sp. BNC1]
          Length = 876

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 108/701 (15%), Positives = 205/701 (29%), Gaps = 146/701 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y++  K     DF DL+++   + ++      +  +   +  +IL+DE QDT+ 
Sbjct: 209 RALYAAYQQRLKTLNATDFGDLLLHPIRIFREHPD---VLREYHAKFKYILVDEYQDTNT 265

Query: 191 IQWEVIRSLTEDFFV------------------------------------GKNTHSSPR 214
            Q+  +R L +                                             ++  
Sbjct: 266 AQYMWLRLLAQRPGSPGTGGLPAEGRARGHALGDVSQAHAAGGPGASPGQRPGGASANKV 325

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIY + GAE   +LR ++             ++I L  ++RSTA IL   
Sbjct: 326 NICCVGDDDQSIYGWRGAEVDNILRFEKDFP--------GATVIRLERNYRSTAHILGAA 377

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             + +  E   G +  +                            S  +  +    + +D
Sbjct: 378 SHLIAHNEGRLGKTLFTEH--------------------------SDPDAPRVKVHAAWD 411

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           S  +       AR +   I  +                  D+ +LVR             
Sbjct: 412 SEEE-------ARALGEEIEALQAKGHAL----------NDMAILVRASFQMREFEDRFV 454

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            L     +S          +   I+D +A  R +    DDL+F  ++  P     E  + 
Sbjct: 455 TL----GLSYRVIGGPRFYERQEIRDALAYFRVVAQGADDLAFERIVNVPKRGLGESAVR 510

Query: 455 KICT-QRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           +I    R     + +  +      +      +  +++++       +       +    I
Sbjct: 511 QIHDVARMRGVPLLQAARDLVGTEELKPKPRASLRNLVESFERWQGLLDRTRHIELAETI 570

Query: 508 LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           L        + +    E    ++ L E +      E         L + LE     +   
Sbjct: 571 LEESGYTDMWKNDRSAEAPGRLENLKELIRSMEEYES--------LRAFLEHVALVMDAE 622

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                + V +MT+H+AKGLE   VFL      +F H+                       
Sbjct: 623 RDEELDAVSLMTLHSAKGLEFDTVFLPGWEEGLFPHQRSLD------------------- 663

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                           +S  EE  RL YVG+TRA   L I     ++       ++    
Sbjct: 664 -------------EGGRSGLEEERRLAYVGVTRAKKNLHI--WFTSNRRIHGLWQSTIPS 708

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +     ++ V+      S         +     P      R + + ++           
Sbjct: 709 RFLDELPEKHVEVTDDGGSFGGYGRPIADRQPGRPNPYGSSRFDNMGEVFSNSYATPGWQ 768

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
              KN          S    + +              +G +
Sbjct: 769 RAQKNRTEATARNWGSRSGHQVERIGYGEPDSGYGLGKGSV 809


>gi|312963948|ref|ZP_07778419.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
 gi|311281983|gb|EFQ60593.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas
           fluorescens WH6]
          Length = 727

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/641 (17%), Positives = 206/641 (32%), Gaps = 124/641 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L+  F       Q+ ++ + I +   D +    +  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LAQTFQILDSDDQQRLVKRVIRELGLDEQRWPARQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  +      +  S    L   + +   YE A  +  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYEAACVRAGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +     +   HIL+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 NPG---LLAHYQKRFRHILVDEFQDTNAVQYAWLRLLAK----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA+ + + +                  I L  ++RSTA IL   + + +   
Sbjct: 252 DQSIYGWRGAKIENIYQYSEDFP--------DAVTIRLEQNYRSTAGILKAANALIANNT 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW             +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDGGEGEAINLYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + + T           +   DI +L R    + ++           +I
Sbjct: 332 ---ARYVVETIESALKTG----------LARSDIAILYRSNAQSRVLEEAL----LRERI 374

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    RH
Sbjct: 375 PYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINIPARGIGEKTVEAIRDHARH 434

Query: 462 ETETVYE------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
              +++E        +             ++ I  L         H     ++       
Sbjct: 435 ADVSMWESMRLLIANKGLTGRAAGALGVFVELIENLAAKCADMPLHLMTQTVIEQSGLIA 494

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTI-KRAHSANHN 570
             +      G   ++ L+E ++     E       L  L + L              + +
Sbjct: 495 YHEAEKGEKGQARVENLEELVSAARAFENTEEDEELTPLAAFLGHASLEAGDTQADEHED 554

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++MT+H+AKGLE P VFLV     +F HK   +                         
Sbjct: 555 SIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPG---------------------- 592

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                         EE  RL YVG+TRA   L++       
Sbjct: 593 ------------RLEEERRLAYVGITRAMQNLVMTYAETRR 621


>gi|308389552|gb|ADO31872.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha710]
          Length = 671

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 113/611 (18%), Positives = 202/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGDPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYQLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQTFMDMFGSYRAKAETSEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + + +++  R       ++ EL   +       
Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|330445114|ref|ZP_08308766.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi
            subsp. mandapamensis svers.1.1.]
 gi|328489305|dbj|GAA03263.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi
            subsp. mandapamensis svers.1.1.]
          Length = 1210

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 156/993 (15%), Positives = 310/993 (31%), Gaps = 165/993 (16%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFFLT 75
            K LW   +  +  +     ++  +     L    AQ  + A+      E    L     +
Sbjct: 238  KTLWKEHFADLEALIANSDVNKRSYTKKSLPTWLAQVNEWANAATDSYELPDKLDK--FS 295

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            Q+   +K   T +       +   +    D    +RD    + + +     L        
Sbjct: 296  QRVLIEK---TPKGEAPQHSVFVAIDDLIDNPATLRDPLLAHAI-ERCRTLLA------- 344

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
               +AK     L F+DL+      ++  D    +  KI  +    +IDE QDT  +Q+ +
Sbjct: 345  ---QAKAHKGWLSFDDLLTQLGAAIE-HDQDDLLASKIRSQYPVAMIDEFQDTDPLQYGI 400

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
              ++ +D             LF +GD KQ+IY+F GA+    ++ +R  Q   T      
Sbjct: 401  FSAVYKD--------HPECGLFMIGDPKQAIYAFRGADIFTYIQARRQVQDHYT------ 446

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSSRIGQVGTVQLWEQV 314
                L  ++RSTAD++  V+ VF+ P +     +D +   + H               + 
Sbjct: 447  ----LGTNWRSTADMIASVNSVFAHPNSPFIYDQDITFEPVGHSPKA----------PER 492

Query: 315  VSQHDSQCNPQQESWTSYFDS---LPQESSASILARRIAYTISNMIGTDT-------IFS 364
                + +       W    D    + +    S +A+  A  I +++              
Sbjct: 493  SWWLNGEKQHALTFWLQDSDEGKPVTKGEYESTMAQATAAQIQHILERSQQGQGYFLDKE 552

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI-SVVGNDRFILTDHLAIKDLMA 423
             G+ + ++A DI VLVR  ++      L R       I SV  ++R  +       D+  
Sbjct: 553  GGEAKAVKAGDIAVLVRTGREG----KLVREALARQGIASVYLSNRDSVFSTAEAADVQR 608

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            L + +L+ EDD +    L S LF  +  ++  +    +E E      +++        + 
Sbjct: 609  LLQAVLTPEDDRALRAALASGLFALTAIELDTLNNDENEWEIAVNSFKQYRQQWQK--RG 666

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
            V+  +  ++              +L  + G ++            + E L    +   + 
Sbjct: 667  VMPMLRSVMAKNN------IAERLLVEEGGERRLTDLL------HIGELLQEASQTLDSD 714

Query: 544  YSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            Y+ L+ L   + +             +  N V+I+T+H +KGLE  +VF+    S     
Sbjct: 715  YALLRWLAENVAEPNGNSDEQILRLESERNLVQIVTIHKSKGLEYDLVFMPFVCSF---- 770

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                        +D+      +  +K  +++V             E  RL+YV +TRA  
Sbjct: 771  -RAVDNKGEVKYHDEAENVTILDITKHEDSVVKADK-----ERLAEDLRLIYVALTRAVY 824

Query: 661  QLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK------------------IKLT 701
               +           K         +     N E                      I   
Sbjct: 825  GCFVGMAPVRNGRSTKEPTGLHKSAMGYLIQNGEECGVAALELALAKLSETQPTITIAEP 884

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIK---------QLMDEQKIPKKLFSPIKNDIN 752
              + +D+W A +  +H       ER+                  Q            DI+
Sbjct: 885  PVLPEDKWEALDEQSHALTRREFERQIERNWWMTSYSNLVKQGHQAHHDSSLDLPGFDID 944

Query: 753  EPYIL------NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFI 805
                       + S           S+ +  +    G  +H + + I    P    +   
Sbjct: 945  SVQTDALQNDGSESPDVEVELEPEYSIYTFPRGARPGTFLHTVFEEIEFTRPVDSPETVA 1004

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK 859
                    + +       L   I  +L   +      +         +E+     I   +
Sbjct: 1005 KLTELLELEHYELAWLPVLQQLIQDVLNCALDGEQLLLAEKTPQQRLTEMEFLLPIEMLQ 1064

Query: 860  KDII-------------------------ISGRIDQISISQQNIFIFEYKTHHHVPQ--- 891
              ++                         + G ID +   Q   ++ ++K+++       
Sbjct: 1065 SPLLNKVIAKHDSISAKAGELGFSSVSGMLKGFIDLVFEHQGKYYVLDWKSNYLGDDPQV 1124

Query: 892  -EIEHIPY-----THIAQLSIYEKILKDSYPNK 918
               E +        +  Q  IY   L+    ++
Sbjct: 1125 YRGEQLVEAMRDHRYDLQYQIYALALQRFLRSR 1157


>gi|15803339|ref|NP_289372.1| exonuclease V subunit beta [Escherichia coli O157:H7 EDL933]
 gi|15832931|ref|NP_311704.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. Sakai]
 gi|168751034|ref|ZP_02776056.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|168758203|ref|ZP_02783210.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|168766791|ref|ZP_02791798.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|168777659|ref|ZP_02802666.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|168788082|ref|ZP_02813089.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|168801682|ref|ZP_02826689.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|195936421|ref|ZP_03081803.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. EC4024]
 gi|208808569|ref|ZP_03250906.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208814260|ref|ZP_03255589.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208818406|ref|ZP_03258726.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209398198|ref|YP_002272283.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4115]
 gi|254794758|ref|YP_003079595.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. TW14359]
 gi|261226118|ref|ZP_05940399.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
            O157:H7 str. FRIK2000]
 gi|261256626|ref|ZP_05949159.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
            O157:H7 str. FRIK966]
 gi|12517302|gb|AAG57931.1|AE005510_3 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Escherichia coli O157:H7 str. EDL933]
 gi|13363149|dbj|BAB37100.1| DNA helicase RecB [Escherichia coli O157:H7 str. Sakai]
 gi|187767152|gb|EDU30996.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|188014874|gb|EDU52996.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|189354956|gb|EDU73375.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|189363675|gb|EDU82094.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|189372121|gb|EDU90537.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|189376191|gb|EDU94607.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|208728370|gb|EDZ77971.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208735537|gb|EDZ84224.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208738529|gb|EDZ86211.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209159598|gb|ACI37031.1| exodeoxyribonuclease V, beta subunit [Escherichia coli O157:H7 str.
            EC4115]
 gi|209761120|gb|ACI78872.1| DNA helicase RecB [Escherichia coli]
 gi|209761122|gb|ACI78873.1| DNA helicase RecB [Escherichia coli]
 gi|209761126|gb|ACI78875.1| DNA helicase RecB [Escherichia coli]
 gi|254594158|gb|ACT73519.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli
            O157:H7 str. TW14359]
 gi|320640467|gb|EFX10006.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. G5101]
          Length = 1180

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVSAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMMRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQARGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|27381672|ref|NP_773201.1| DNA helicase II [Bradyrhizobium japonicum USDA 110]
 gi|27354841|dbj|BAC51826.1| DNA helicase II [Bradyrhizobium japonicum USDA 110]
          Length = 872

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/583 (17%), Positives = 182/583 (31%), Gaps = 144/583 (24%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y+E  K     DF DL++    + ++      I  +  Q   +IL+DE QDT++ Q
Sbjct: 220 LYTSYQERLKILNAADFGDLLLENIRIFREHPD---ILRQYQQRFKYILVDEYQDTNVAQ 276

Query: 193 WEVIRSLTE---------------------------------DFFVGKNTHSSP-RTLFA 218
           +  +R L++                                 +   G  T +   + +  
Sbjct: 277 YLWLRLLSQAPSPKVVIPGRVEDANPESRDSGFDAPHRPGMTEQTAGTPTATPHVKNICC 336

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD+ QSIY + GAE   +LR +               +I L  ++RST  IL     + 
Sbjct: 337 VGDDDQSIYGWRGAEVDNILRFEHDFP--------GAKVIRLERNYRSTGHILAAASHLI 388

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +  E   G +                                  + ++ + T  +DS  +
Sbjct: 389 AHNEGRLGKTL----------------------------RTEDQDGEKVTVTGSWDSEEE 420

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  AR I   I  +               +  +I +LVR              L  
Sbjct: 421 -------ARGIGEEIEQIQRQGE----------KLNEIAILVRASYQMREFEDRFVTL-- 461

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457
              +           +   I+D +A  R I S  DDL+F  ++ +P     +  +  +  
Sbjct: 462 --GLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNTPKRGLGDATVQMLHD 519

Query: 458 TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
             R     ++E  +      +         + ++          +  +  D   ++L   
Sbjct: 520 HARKRRIPLFEAARAVVETDELKPKARGSLRDLVAQFDRWRAQREVTAHTDLAQIVLDES 579

Query: 512 KGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
              + +      +     + L E +      E         L   LE     + R   A 
Sbjct: 580 GYTEMWQKDRSADAAGRLENLKELVRSMEEFEN--------LQGFLEHISLVMDRDGGAE 631

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V +MT+H+AKGLE   VFL      +F  +                           
Sbjct: 632 EDAVSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLD----------------------- 668

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                       ++  EE  RL +VG+TRA  + +I   +N  
Sbjct: 669 ---------EQGRAGLEEERRLGHVGITRARRRAMIYFATNRR 702


>gi|294637961|ref|ZP_06716228.1| DNA helicase II [Edwardsiella tarda ATCC 23685]
 gi|291088893|gb|EFE21454.1| DNA helicase II [Edwardsiella tarda ATCC 23685]
          Length = 720

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/694 (16%), Positives = 217/694 (31%), Gaps = 132/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L   Q S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLAVEQCSPFSIMAVTFTNKAAAEMRHRIEALIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    +   +   LK  +K    +  +   R         
Sbjct: 90  FHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPARQGMWYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +             +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 150 KDDGLRPQHIESYGNPVEQTWLRIYQAYQEACDRAGLVDFAELLLRAHELWLHKP---QI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                   ++IL+DE QDT+ IQ+  IR L  D             +  VGD+ QSIY +
Sbjct: 207 LEHYRARFSNILVDEFQDTNRIQYAWIRMLAGD----------SGRVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                  I L  ++RS+ +IL   + +    +   G   
Sbjct: 257 RGAQVENIQKFLDDFP--------GAQTIRLEQNYRSSGNILRAANALIENNDGRLGKK- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +       AR +
Sbjct: 308 --------------------LW-------TEDGEGEPISLYCAFNELDE-------ARFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                    K+  +L R    + ++            +       
Sbjct: 334 VNRIKAWQDNGGAL----------KECAILYRSNAQSRVLEEAL----LQAAMPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD +A  R + ++ DD +F  ++ +P+    +  +  +    R    T+++
Sbjct: 380 MRFFERQEIKDALAYLRLLANRNDDAAFERVVNTPVRGIGDRTLDVVRQTARDRQLTLWQ 439

Query: 469 YIQKFANC------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +             +  +  ++ I  L   +     H     ++     RQ +    G
Sbjct: 440 ATRALLQEAVFPGRAANALRRFLELIDALEQQSLDLPLHVQTDRVIRDSGLRQMYEQEKG 499

Query: 523 N---EVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
                 I+ L+E +  T +   ++    L  L + L        +    A  + V++MT+
Sbjct: 500 EKGQTRIENLEELVTATRQFSYEDDDEDLPPLQAFLSHAALESGEGQADAYQDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                  EE  RL YVG+TRA  +L +    +  
Sbjct: 591 -----RLEEERRLAYVGVTRAMRKLTLTYAESRR 619


>gi|320667103|gb|EFX34066.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. LSU-61]
          Length = 1180

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 123/877 (14%), Positives = 273/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVSAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMMRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SG--------------------------KINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                                         +   +   ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLAISEPLIASQLDALIRQFDPLSAGCPPLEFMQARGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|50843216|ref|YP_056443.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202]
 gi|50840818|gb|AAT83485.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202]
 gi|315106181|gb|EFT78157.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA1]
          Length = 810

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/633 (15%), Positives = 194/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +   VLDF+DLI+ T  +L+K      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANVLDFDDLIMYTVTVLRKFPE---VRERYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDGPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDSLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  +   I + +      +  + IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDGHIAMVEQGKRADEIASSILKESGYITELENSKDPQDETRLENLIELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +   +  
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPEHLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|289670782|ref|ZP_06491857.1| DNA-dependent helicase II [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 728

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/575 (17%), Positives = 191/575 (33%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 154 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 261 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 307

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR +   
Sbjct: 308 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVEG 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 338 ARQWVRDGG----------SYGEVAVLYRSNVQSRALEEAL----ISEQLPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 384 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 443

Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  + +L          +    +L     R+ +        
Sbjct: 444 LCTQQNTLAARARNALATFLSLVGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGL 503

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    V++MT
Sbjct: 504 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 563

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 564 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 589

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 590 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 624


>gi|159045024|ref|YP_001533818.1| DNA helicase II [Dinoroseobacter shibae DFL 12]
 gi|157912784|gb|ABV94217.1| DNA helicase II [Dinoroseobacter shibae DFL 12]
          Length = 807

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 115/649 (17%), Positives = 196/649 (30%), Gaps = 111/649 (17%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+E  K     DF DL+++   + +K +    +  +  +   +IL+DE QDT++ 
Sbjct: 206 ELYAAYQERLKTLNATDFGDLLLHVVGIFQKHED---VLAQYQRWFRYILVDEYQDTNVA 262

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 263 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGAL--- 309

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL     V S  +   G                      +LW
Sbjct: 310 -----VIRLEQNYRSTPHILAAASGVISGNKGRLGK---------------------ELW 343

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++     ++D   +       AR I   I +M            R  
Sbjct: 344 -------TDAQEGEKVRLIGHWDGDEE-------ARWIGEEIESMQNG-----TRGMRPF 384

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I +LVR                    +           + + I+D MA  R + S 
Sbjct: 385 ALNEIAILVRASHQMRAFEDRF----LTIGLPYKVIGGPRFYERMEIRDAMAYFRVVTSP 440

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISKFQHV 484
           EDDL+F  ++ +P     +    KI            E   +    +     G ++ + +
Sbjct: 441 EDDLAFERIVNTPKRGLGDKAQAKIQAAARANGVPLKEGARILLAAKGLGGKGAAELRLL 500

Query: 485 IKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
           I  +      A+   +  +   +IL        + +    E    ++ L E +      E
Sbjct: 501 IDGLDRWSAAARDGANHVELAQVILDESGYTTHWQNDKTPEAPGRLENLKELVKALEGFE 560

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L   LE     +         +V IMT+H AKGLE P VFL      +F  
Sbjct: 561 N--------LQGFLEHVSLVMDNDKGDAGPQVSIMTLHAAKGLEFPAVFLPGWEDGIFPS 612

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                           +E  RL YVG+TRA +
Sbjct: 613 QRSIDDQTGKVEIG---------------------------READEERRLAYVGITRAEE 645

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
              I   SN     +   +     + +       V                         
Sbjct: 646 LCTISFASNRRVFGRWQDQMPSRFIDELPEAHVEVLTPPGLYGGGYGAAAPGAMPDGVFA 705

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
            + LE +     + +     +          ++P       ID      
Sbjct: 706 GSQLETKAAEANVYNSPGWRRMQARAGARGTSQPREARNMVIDATAVPA 754


>gi|323188764|gb|EFZ74049.1| exodeoxyribonuclease V, beta subunit [Escherichia coli RN587/1]
          Length = 1168

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 131/971 (13%), Positives = 296/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 203  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 260

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    ++ ++     +    L     
Sbjct: 261  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEVIEQLLAEPLSIRDLVITRA 319

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 320  LAEIRETVTREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 378

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 379  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 430

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS + ++  V+K+FS  ++A    E     ++             
Sbjct: 431  ----------LDTNWRSASGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 474

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 475  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 530

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 531  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 587

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 588  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 639

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 640  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 693

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 694  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 753

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 754  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 800

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 801  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCNDDIAWQTTQI 860

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 861  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 920

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          +  +    
Sbjct: 921  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 977

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L  P+      ++     D   E+     I+ P                   
Sbjct: 978  LTEWITTVLLAPLNETGISLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1037

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1038 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1097

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1098 QYQLYTLALHR 1108


>gi|119387000|ref|YP_918055.1| UvrD/REP helicase [Paracoccus denitrificans PD1222]
 gi|119377595|gb|ABL72359.1| ATP-dependent DNA helicase, Rep family [Paracoccus denitrificans
           PD1222]
          Length = 799

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 113/647 (17%), Positives = 188/647 (29%), Gaps = 119/647 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+    +   +DF DL+++  +L +       +         +IL+DE QDT++ 
Sbjct: 204 RLYAAYQRRLLELNAVDFGDLLMHCVNLFQAHPD---VLRTWQDRFRYILVDEYQDTNVA 260

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          + R +  VGD+ QSIY + GAE   +LR +          
Sbjct: 261 QYMWLRLLAQ----------AHRNICCVGDDDQSIYGWRGAEVGNILRFESDFP------ 304

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL     + +  +   G +                     LW
Sbjct: 305 --GAQVIRLEQNYRSTPHILAAASGLIAANKGRLGKT---------------------LW 341

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  + +       W S              AR I   I    G        +    
Sbjct: 342 ---TEAEEGERVRLIGHWDS-----------EAEARWIGEEIEAFQGGHRHSIGRR---- 383

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              DI +LVR                    +           +   I+D MA  R  +S 
Sbjct: 384 SLNDIAILVRASHQMRAFEDRF----MTIGLPYRVIGGPRFYERQEIRDAMAYFRLAVSP 439

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGISKFQHV 484
            DDL+F  ++  P     +  + KI    R    ++ E              G    +  
Sbjct: 440 TDDLAFERIVNVPKRGLGDKAVQKIQVEARERGLSLLEGAASAVASGALGGKGAGALRQF 499

Query: 485 IKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
            + +      A     +  +    IL        + +    +    +D L E +      
Sbjct: 500 TEAMGRWHADALDSRMNHVELAERILDESGYTAMWQNDKSPDAPGRLDNLKELIKALEEF 559

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +         EV IMT+H AKGLE P+VFL      +F 
Sbjct: 560 EN--------LQGFLEHVALVMDNDRGEQSEEVSIMTLHAAKGLEYPIVFLPGWEDGLFP 611

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TR  
Sbjct: 612 SQRS--------------------------------MDESGMKGLEEERRLAYVGITRGE 639

Query: 660 DQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           + + I    N       + S    + D + +          +         +  A     
Sbjct: 640 ELVTISFAGNRRMYGQWQSSLPSRFIDELPEDHVEVLTPPGLYGGGYGAAVQPFAQSVMH 699

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
                  +      K++ +      +        I+       S  D
Sbjct: 700 ERAARADVYNSPGWKRMQERSAQRAQPVHRTPVVIDAEPAARFSVGD 746


>gi|254446951|ref|ZP_05060418.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium HTCC5015]
 gi|198263090|gb|EDY87368.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium HTCC5015]
          Length = 1215

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/894 (13%), Positives = 276/894 (30%), Gaps = 124/894 (13%)

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
            +  +    +   F T      T+A    A ++       K++  ++ F+D+I    + L 
Sbjct: 312  ELFESIPALEALFATLDENADTIALHA-AHWVAERIATHKQRRSLIGFDDMISQLAEALD 370

Query: 162  KRDVSAWIRY-KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
              D S      +I Q+    L+DE QDT   QW + + L  +             L  +G
Sbjct: 371  TPDASDTALAQRIRQQYPIALVDEFQDTDPKQWRIFQRLYPEIET------RQNALVMIG 424

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D KQ+IY F GA+    L  +R                 LP ++RS+  ++  V+ VF+ 
Sbjct: 425  DPKQAIYQFRGADIYTYLDARRSID--------DTRRYTLPCNYRSSEPMVAAVNHVFNQ 476

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                +         I   + +          ++     + +       +     ++ +  
Sbjct: 477  GNQHKS-GAFMEADIPFEAVQANG------RKERFVVMEKEHCALTLWYRDSDVAVGKNQ 529

Query: 341  SASILARRIAYTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                 A   A  I  ++          I   G+   +   DI +LVR   +  ++     
Sbjct: 530  YLQQSAADTASEIVRLLNLARDRRAGFINEAGQFTALAPSDIAILVRSGSEAQVMRDALA 589

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
              +     S   +++  + D    +D++   R      +D      L +   +    D+ 
Sbjct: 590  ERQLR---SAYLSNKESVFDSPEARDVLHWLRACHEPRNDRHMRAALGTITLDLPWADLD 646

Query: 455  KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
             +                      + +    +   E   + Q          ++      
Sbjct: 647  ALNHD------------------EASWNRRYEQFAEYHQLWQRSGVLAVIYHLVWDFHLA 688

Query: 515  QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL----EQYPPTIKRAHSANHN 570
             +  +      I  L E L             L+ L   +    +           ++  
Sbjct: 689  ARQNAERSLSNILQLAELLQSASGQVDGEAGLLRWLEEHITEERDASSDEQVLRLESDDE 748

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
             ++I+T+H +KGLE P+VF+    +   ++          + ++  G       ++   +
Sbjct: 749  LIKIVTLHKSKGLEYPLVFMPFCATFRPANAKD----FPQAYHNGEGQLQLALSAEEIVS 804

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII------CKHSNTSNEKKSNQRTWYDM 684
              +  ++   +    E  RLLYVGMTR    L +         ++ S   +S      ++
Sbjct: 805  DSTTALEQCDRERLAEDLRLLYVGMTRPRHALWLGLAPTTLGRAHKSKIGQSVWGHLLNL 864

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH---------HPENTPLEREETIKQLMD 735
              D        + IK       +   + ++ST          H + TPL +    ++   
Sbjct: 865  PADDIDKKTFQEVIKAPFQALAEGAPSVQFSTPELNSEPYLGHLDATPLGQPRECQRAQP 924

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGK----------TNLESLLSDNQTFNRGLI 785
             +       + ++         +        +           + E L    +    G  
Sbjct: 925  PRWWMASYSALLRGADPIAETASGFDERLADEGERRKASTELPSPEGLHPFPRGAMPGDF 984

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLW----PAKEYKNLLLSITRLLENPM----- 836
            +H+ L+++      + +  +  + ++                L  ++  +++  +     
Sbjct: 985  LHRQLELMGEAHFERAEQRLAEFKSELLPKLQLRQWEHWQDRLPQALLGIVQQALPLPDN 1044

Query: 837  ----MTTAMSCDSYSEVSV--------SGKINCPKK-----------DIIISGRIDQISI 873
                +        ++E+          S  I+               + ++ G ID +  
Sbjct: 1045 QRVALADLKPAQYHTEMEFHFAAHGCRSTDIDRLIGHDPSGLKPQSLNGLLKGFIDLVFE 1104

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
             +   ++ +YK+++  P +  +             +  Q ++Y   L      +
Sbjct: 1105 HEGRYYVLDYKSNYLGPDDSAYTQDAMAESVREHRYDLQYALYSLALHRLLKQR 1158


>gi|300703480|ref|YP_003745082.1| DNA helicase II [Ralstonia solanacearum CFBP2957]
 gi|299071143|emb|CBJ42456.1| DNA helicase II [Ralstonia solanacearum CFBP2957]
          Length = 791

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 120/839 (14%), Positives = 233/839 (27%), Gaps = 163/839 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W +   +VS                +  +   +   +        
Sbjct: 28  GAGSGKTRVLTTRIAWLIQSSRVSPSGVLAVTFTNKAAKEMTARLSAMLPINTRAMWIGT 87

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  L +  L    +     +     +   +   +K  LK              Q      
Sbjct: 88  FHGLCNRLLRAHYRDAGLPQTFQILDTQDQLSAVKRLLKSLNIDDEKFPPKNVQYFINGA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++       +           L A Y+   ++  V+DF +L++   +LL+  D    IR
Sbjct: 148 KEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVDFAELLLRCYELLRYNDA---IR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               +   HIL+DE QDT+ +Q+  ++ L      G      P  +FAVGD+ QSIY+F 
Sbjct: 205 AHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEPGVA----PNAIFAVGDDDQSIYAFR 260

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    ++  +R  +            I+L  ++RS  +IL   + + +      G +  
Sbjct: 261 GANVGNMVDFEREFRVE--------HRIKLEQNYRSHGNILDTANHLIAHNTRRLGKNLR 312

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V++++      +                          A  I 
Sbjct: 313 TD---------AGLGEPVRVYQSATDGQE--------------------------AGWIV 337

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I   I + T             +I +L R    + +I            I        
Sbjct: 338 DEIRERIASGTA----------RSEIAILYRSNAQSRVIEHSL----FSVGIPYKVYGGL 383

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469
              +   IK  +A  + + + ++D +F  ++  P        +  +    R    ++   
Sbjct: 384 RFFERAEIKHALAYLQLLENVDNDAAFGRVVNFPARGVGARSLELLQDAARLYGASLAAS 443

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528
           +        +K    ++ I ++    +  +  +    ++ A      +     G + I+ 
Sbjct: 444 VPYLTGAAGTKLAAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHYQGEKEGLDRIEN 503

Query: 529 LDEFLNFTLRNEQNS---------------------------------------YSSLQE 549
           L E +                                                    +  
Sbjct: 504 LQELVTAAQAFVAEEGYGADAIATALPVRHDAMLRIEGGETDGDVVAELVAGEAPMEMTP 563

Query: 550 LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           L++ L             A  + V++MTVH AKGLE  VVF+      +F H++      
Sbjct: 564 LVAFLTHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFHVVFITGLEEGLFPHENSL---- 619

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC--- 665
                                               EE  RL+YV +TRA ++L +    
Sbjct: 620 ------------------------------QDTDGLEEERRLMYVAITRARERLYLSFAQ 649

Query: 666 -----KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                         +         +             +       D     +W      
Sbjct: 650 SRVLHGQIRYHIRSRFFDELPEATLKWLTPQHAGYSPTRRAQGAQGDNAWGRDWFKRPER 709

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                        MD  K         +        +  S       T LE   +D + 
Sbjct: 710 GDDEAYTGRPTGGMDTGKNYADAKRAAETGFRVGQSVFHSKFGEGVITTLEGEGTDARA 768


>gi|281179845|dbj|BAI56175.1| exonuclease V beta subunit [Escherichia coli SE15]
          Length = 1180

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 132/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGEMQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDVAGLRTCIEALCDDDIAWQTAQI 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          +  +    
Sbjct: 933  SVVEVPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FEPQWEPV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L  P+      ++     D   E+     I+ P                   
Sbjct: 990  LTEWITAVLLAPLNETGISLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|288927884|ref|ZP_06421731.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon
            317 str. F0108]
 gi|288330718|gb|EFC69302.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon
            317 str. F0108]
          Length = 1075

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 135/844 (15%), Positives = 275/844 (32%), Gaps = 93/844 (11%)

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            EKL+K Q +         + K+    L  L L   +     E  +++       L+ +T 
Sbjct: 318  EKLRKEQAKL------LKSAKLTLRHLDQLRLLDKIETQVRELNEQSNRF----LLSDTQ 367

Query: 158  DLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
             LL        S +I  KI  ++ HI+IDE QDTS +QW   + L ++      + S   
Sbjct: 368  TLLHALIHDSDSPFIFEKIGTQLEHIMIDEFQDTSTVQWANFKVLLQECMSHNQSQS--- 424

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
                VGD KQSIY +   + + +   ++        +   F I  +  ++RS  +I+   
Sbjct: 425  --LIVGDVKQSIYRWRSGDWRLLNEIEKQF----AGSPHAFKIERMTTNYRSERNIVDFN 478

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            +  F      +    +  +    +  ++      QL                        
Sbjct: 479  NAFFEAACAIEQRELEGKSPTGAQQMQVAYQDVKQLVPTSKEPK----------GRVEVC 528

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
             L +E+    +  ++ +TI  ++              +AKD+ +LVR      LI     
Sbjct: 529  LLDKENCEQRMLAKVCHTIKTLLEQG----------ARAKDVAILVRNNNSIALIAGYMM 578

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                +  + +V ++ F L   +A++ +M   R + +  D L    +  +   +   + I 
Sbjct: 579  VHLPE--VRLVSDEGFKLQASIAVQIIMGALRVLANPADRLLQANLATTYQTHILGNAIG 636

Query: 455  KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                 + + +       KF N                          +    +       
Sbjct: 637  DREMLKRDADVASFLPNKFWNNH---------------QQLMAMPIFNIVEEV------Y 675

Query: 515  QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
            Q F     +E    +  F +   +   ++ + L  +I E E              N VR+
Sbjct: 676  QAFQLERLSEQSAYICTFYDRLNKFLVDNSADLNAVIDEWENDMKDRAIQSDE-LNGVRL 734

Query: 575  MTVHTAKGLESPVVFLVDTGSQV-FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            +T+H +KGLE     +     Q+  +   +      P  N  P +P+ +   +   ++  
Sbjct: 735  LTIHKSKGLEFAHTIVPFCDWQLERTGGTLWCQPDEPPFNALPLVPVDLYPKQLMGSVYE 794

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                H    T  +   LLYV  TRA   L +    + +  + +      + +        
Sbjct: 795  KDYLHEHLQTMVDNMNLLYVAFTRAGRNLFVMGEKDKAGSRSAVIGQCIEQLMGMLPG-- 852

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                    +++        E+          E +           IP      +K   ++
Sbjct: 853  --------STLETTAEEDLEFKYGTLSIDTAEEKAKSTSDNVFNTIPSPFTFDVKVYESK 904

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
               L  S   +      +     N     G ++H +   I TL      N +        
Sbjct: 905  ALFL-QSNKSSDFIGGEDDNAQQNNYIKLGRVLHAVFAQIRTL--ADVPNVLRQLEQDGV 961

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCPKKDIIISGRIDQI 871
                    + L+  + +   +  +    S      +E S+      P  + +++ R D++
Sbjct: 962  IYDSNLTKEKLIEMLNKRFADKRVKEWFSDGWQLFNECSILSV--DPVTNAVVTHRPDRV 1019

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
              + + + + ++K               H AQ++ Y  +L+     K +   L YV   K
Sbjct: 1020 ITNGEEMRVIDFKFGKP--------KEEHHAQVASYMALLETM-GYKRVSGYLWYVYSNK 1070

Query: 932  VFII 935
            +  +
Sbjct: 1071 IEEV 1074


>gi|117625073|ref|YP_854061.1| exonuclease V subunit beta [Escherichia coli APEC O1]
 gi|115514197|gb|ABJ02272.1| exodeoxyribonuclease V beta chain [Escherichia coli APEC O1]
          Length = 1180

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 132/971 (13%), Positives = 294/971 (30%), Gaps = 132/971 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 215  DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 272

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273  AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332  LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391  PQQYRIFRRIW--------HHQPEIALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 443  ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 486

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
                +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 487  ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQICDWLQAGQRGEALLMN 542

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 543  GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 599

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 600  LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 651

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
             +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 652  WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 706  ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 765

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                  ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 766  AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 812

Query: 662  --LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH-- 717
              L +        +KK +       +       E      L   I         W T   
Sbjct: 813  CSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCNDDIAWQTAQI 872

Query: 718  ----HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTID 763
                  +       E   + +          +              D+     ++ + + 
Sbjct: 873  GDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVV 932

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
            +  +    +     +  + G  +H L + +         N++          +  +    
Sbjct: 933  SVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPID-PNWVQEKLELGG--FEPQWELV 989

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK------------------ 859
            L   IT +L+ P+      +      D   E+     I+ P                   
Sbjct: 990  LTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAG 1049

Query: 860  --------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIA 902
                       ++ G ID +   +   ++ +YK++                    + +  
Sbjct: 1050 CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDL 1109

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1110 QYQLYTLALHR 1120


>gi|75676545|ref|YP_318966.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255]
 gi|74421415|gb|ABA05614.1| ATP-dependent DNA helicase, Rep family [Nitrobacter winogradskyi
           Nb-255]
          Length = 816

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 176/562 (31%), Gaps = 123/562 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+   K     DF DL++    L ++      +  +       IL+DE QDT++ Q
Sbjct: 204 LYAAYQARLKILNAADFGDLLLENIRLFREHPD---VLRQYQNRFKFILVDEYQDTNVAQ 260

Query: 193 WEVIRSLTEDFFVGKNTHS-------------SPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +  +R L++                         R +  VGD+ QSIY + GAE   +LR
Sbjct: 261 YLWLRLLSQAPPSSHALFPAPVAAEGPDPRTARSRNICCVGDDDQSIYGWRGAEVDNILR 320

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                            +I L  ++RST  IL     + +  E+  G +           
Sbjct: 321 FDHDFP--------GAKVIRLERNYRSTGHILAAASHLIAHNEDRLGKTL---------- 362

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                  + ++ + T  +DS  +       AR I   I  +   
Sbjct: 363 ------------------RTEDVDGEKVTVTGSWDSEEE-------ARAIGEEIEQLQRA 397

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                       +  +I +LVR              L     +           +   I+
Sbjct: 398 GE----------KLNEIAILVRASFQMREFEDRFLTL----GLPYRVIGGPRFYERAEIR 443

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------K 472
           D +A  R I S  DDL+F  ++  P     +  +  +    R     + E  +      +
Sbjct: 444 DALAYLRLINSPADDLAFERIVNVPKRGLGDATVKMLHEIARKRQIPLSEAARAVVETDE 503

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529
                    + +++         +     +   ++L      + +      +     + L
Sbjct: 504 LKPKARGSLRALLESFDRWRIQREAMRHTELAEIVLDESGYTEMWQKDRSADAAGRLENL 563

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            E +      E         L   LE     + R   A+ + V +MT+H+AKGLE   VF
Sbjct: 564 KELIRSMDEFEN--------LQGFLEHISLVMDRDGGADEDAVSVMTLHSAKGLEFDTVF 615

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L      +F H+                                  +    +S  EE  R
Sbjct: 616 LPGWEEGLFPHQR--------------------------------ALDEQGRSGLEEERR 643

Query: 650 LLYVGMTRASDQLIICKHSNTS 671
           L +VG+TRA  +  +   +N  
Sbjct: 644 LAHVGLTRARRRAKLYFATNRR 665


>gi|123443510|ref|YP_001007483.1| exonuclease V subunit beta [Yersinia enterocolitica subsp.
            enterocolitica 8081]
 gi|122090471|emb|CAL13339.1| exodeoxyribonuclease V beta chain [Yersinia enterocolitica subsp.
            enterocolitica 8081]
          Length = 1209

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 126/991 (12%), Positives = 297/991 (29%), Gaps = 160/991 (16%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSL--SMETGNPTILKK--AQTLQQASQTQCIEER 65
            +E+    ++ +        +          ++ +G+    +   A+ L    +       
Sbjct: 216  DETILSRHQQIVVQIEAVKAQWRAAAPELEALISGSGVDKRSYSARYLPGWLEKVGSWAE 275

Query: 66   FSLLSSFFLTQKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
                      +    +++++   T++      D+   + +  ++ + +RD          
Sbjct: 276  QETGDYQLPKELEKFRQSVLFEKTKKGEAPQHDVFHAIDRIFEQPLTLRDLI-------- 327

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                      +    ++ K++   L F+DL+   +  L++      +   I       +I
Sbjct: 328  ---LARAISEIRISVQQEKRQRAELGFDDLLSKLDAALQQ-AGGELLAQSIRTRYPVAMI 383

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT   Q+ +  +L                L  +GD KQ+IY+F GA+    +R + 
Sbjct: 384  DEFQDTDPQQYRIFHTLYGG--------QEECGLLLIGDPKQAIYAFRGADIFTYIRARS 435

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                  T          L  ++RS+  ++  V+++FS+ +      +     +       
Sbjct: 436  EVSAHYT----------LETNWRSSFPMVQSVNRLFSLVDVPFLFQQIPFINVAPAQKNK 485

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-- 360
                       +  +   +  P    W    + +       ++AR+ A  I + +     
Sbjct: 486  Q----------LSFEIKGKKQPAMSFWLQPGEGVGVSEYQQLMARQCAAQIRDWLTAGQK 535

Query: 361  ---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                + +    R +QA DI +LVR R +  L+      L      SV  ++R  + D   
Sbjct: 536  GLAQLVTATSSRPVQASDITILVRSRAEAALVRDALSAL---AIPSVYLSNRDSVFDTAE 592

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
             KDL+ L + +L+ E + +    + + +       + ++       + + +    +    
Sbjct: 593  AKDLLWLLQAVLAPEQERALRSAMATGILGLDARMLDELNHDERAWDALVDEFDGYRQHW 652

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT- 536
                + V+  + E++              +L  + G ++            L E L    
Sbjct: 653  QR--RGVLPVLREIMAQRH------LAENLLATQGGERRLTDLL------HLGELLQEAA 698

Query: 537  --LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L +E      L + I++        +    ++ + V+++T+H +KGLE P+V+L   G
Sbjct: 699  SQLDSEHALIRWLAQQIAQPNHQSDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVG 758

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            +       +                          N   +     ++    E  RLLYV 
Sbjct: 759  NFRQQQDVLYHDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVA 805

Query: 655  MTRASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            +TRA          +I        E   +      +V      D +    KL       +
Sbjct: 806  LTRAVYHCSIGIAPLIKGGRKKQGESDMHLSALGYLVQQGQAGDAQYLADKLAGLAALAD 865

Query: 709  W-----IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI---------------- 747
                   A +      +    E      +    Q       +                  
Sbjct: 866  GEISVSQAGQLDETPWQPQQDELPALAARQFSRQIHDFWRVTSYSGLQQHGSSKSVASQA 925

Query: 748  ----KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                  ++      +     T       +  +  +    G  +H L + +      ++  
Sbjct: 926  LSVLLQELLPRLDTDAVGEQTLITEPQLTPHTFPRGAAPGTFLHDLFEPLDFSQPIEQGW 985

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINC 857
                      + +  +    L   +T +++ P+      +         +E+     I+ 
Sbjct: 986  LTEQL---QQQGFGEQWSSMLYQWLTDIVQTPLNETGVTLAQLTPQSKQAELQFYLPIDA 1042

Query: 858  PKKDI--------------------------IISGRIDQISISQQNIFIFEYKTHHHVPQ 891
              +                            ++ G ID +   +   ++ +YK++     
Sbjct: 1043 LLQARELDTLIKRYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWRGKYYLLDYKSNWLGED 1102

Query: 892  EIEHIPY---------THIAQLSIYEKILKD 913
               +             +  Q  +Y   L  
Sbjct: 1103 SSAYTHDAMAQAMAEHRYDLQYQLYTLALHR 1133


>gi|227114721|ref|ZP_03828377.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 720

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 116/728 (15%), Positives = 225/728 (30%), Gaps = 144/728 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  +   L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIDHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D +++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHMDANLPQDFQILDSEDQLRLLKRLIRALNLDEKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +           + +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WFINGKKDEGLRPQHIESYGNPIEQTWQRVYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                +     +   +IL+DE QDT+ IQ+  IR L  D             +  VGD+ 
Sbjct: 204 PH---VLNHYRERFTNILVDEFQDTNRIQYAWIRMLAGD----------SAKVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + +    +               I L  ++RST++IL   + + +    
Sbjct: 251 QSIYGWRGAQVENIQLFLKDF--------AGAETIRLEQNYRSTSNILKAANALIAHNGG 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RLGKN---------------------LW-------TDGVEGEPISLYCAFNELDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR +   I                    KD  +L R    + ++            + 
Sbjct: 330 --ARYVVNRIKTWHENGGAL----------KDNAILYRSNAQSRVLEEAL----LQQSMP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD ++  R I ++ DD +F  ++ +P     +  +  +    R  
Sbjct: 374 YRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDR 433

Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +             +  Q  I+ I  L +       H      +        
Sbjct: 434 QLTLWQSTRALLQEKALAGRAAASLQRFIELIDALAYETSELPLHIQTDRAIKDSGLWSM 493

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G +    ++ L+E +  T +   Q     L  L + L        +    AN + 
Sbjct: 494 YEQEKGEKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAALEAGEGQADANQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA ++L I    +     K         V +    
Sbjct: 591 -----------RLEEERRLAYVGVTRAMEKLTITYAESRRLYGKEAYHRPSRFVGELPEE 639

Query: 692 DERVKKIK 699
                +++
Sbjct: 640 CVEEVRLR 647


>gi|114570609|ref|YP_757289.1| ATP-dependent DNA helicase Rep [Maricaulis maris MCS10]
 gi|114341071|gb|ABI66351.1| ATP-dependent DNA helicase, Rep family [Maricaulis maris MCS10]
          Length = 763

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 116/665 (17%), Positives = 201/665 (30%), Gaps = 126/665 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+   K     DF DL+++T  + K       +      +  ++L+DE QDT++
Sbjct: 186 QDLYRIYQSRLKTLNACDFGDLLLHTLHIFKDNPD---VLKFYHDKFRYLLVDEYQDTNI 242

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +              +  VGD+ QSIY + GAE   +LR ++        
Sbjct: 243 AQYLWLRLLAQ----------GTGNICCVGDDDQSIYGWRGAEVDNILRFEKDF------ 286

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++I L  ++RSTA IL     + +   +  G +                     L
Sbjct: 287 --SGATVIRLERNYRSTAHILGAASGLIAANRSRLGKT---------------------L 323

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W             ++      +D   +       AR +A  I N +             
Sbjct: 324 W-------TDDAEGEKVQVRGIWDGEAE-------ARFVAEEIENWVSGQRA-------- 361

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VLVR              L     +           +   ++D  A  R + S
Sbjct: 362 --YSDSAVLVRAAWQMRAFEDRFIML----GLPYKVIGGPRFFERAEVRDAHAYLRLVRS 415

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ------KFANCGISKFQH 483
            EDDL+F  ++ +P     +  + KI  T R     + E  +      +      +    
Sbjct: 416 PEDDLAFERIVNTPKRGIGDTTVQKIAVTARAMGVPMTEATRVMLGTDEIRGKARTALGV 475

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
            ++ +      ++     +   +IL        +      +     + L E +      +
Sbjct: 476 FLRDVERWREQSEQSRLDELAEIILDESGYTAMWREDKTPQAAGKLENLKELVRSMGEYD 535

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L + LE            + +E+ +MT+H AKGLE P+VFL      VF  
Sbjct: 536 T--------LEAYLEHVALLTDADRKPDEDEISLMTLHGAKGLEFPLVFLPGWEETVFPS 587

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                         + EE  RL YVG+TRA +
Sbjct: 588 QRSLDEGGT--------------------------------RSLEEERRLAYVGITRARE 615

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           + II   +N            +  V  S   DE         S          + +   +
Sbjct: 616 RAIITFTANRM------IYGRWQTVIPSRFIDEMPVDHVEARSETGYYDSGPGFESVSQQ 669

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
              +    +       Q   +         IN    L  S       T        +  F
Sbjct: 670 PDAMASSYSSPGWKRYQANQQSGRRSAPPTINAKATLIESGGSDTQGTWRAGDRVFHDKF 729

Query: 781 NRGLI 785
             G +
Sbjct: 730 GYGTV 734


>gi|170695890|ref|ZP_02887030.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
 gi|170139188|gb|EDT07376.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
          Length = 787

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/724 (16%), Positives = 217/724 (29%), Gaps = 168/724 (23%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W + +   S                ++ +   L            
Sbjct: 28  GAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAAREMMSRLSALLPIDTRGMWIGT 87

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F  L +  L             + + T +       L + L         K  Q      
Sbjct: 88  FHGLCNRMLRAHHRDAALPATFQILDTADQLSAIKRLMKGLNIDDEKYPAKNLQYFINNA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++    K   +T         L   Y++  ++  V+DF +L++   +LL      A +R
Sbjct: 148 KEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVDFPELLLRCYELLAHN---APLR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L               ++FAVGD+ QSIY+F 
Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKLLAGQ----------TNSIFAVGDDDQSIYAFR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +   +     R         +I+L  ++RS   IL   +++ +      G +  
Sbjct: 255 GANVGNMRDFEHEFNVR--------HLIKLEQNYRSHGHILDAANQLIANNSRRLGKNLR 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + ++ +  A  I 
Sbjct: 307 TD---------AGHGEPVRVY--------------------------EAATDTQEAGWIV 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +I T T             ++ VL R    +  I         +  I+       
Sbjct: 332 EEIKALINTGT----------SRSEVAVLYRSNAQSRTIEHTL----VNAGIAYRVYGGL 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   
Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYNCSMAAA 437

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
           I   A    S        I ++    Q  S  D    ++ A      + + R G + ++ 
Sbjct: 438 IPYVAGKAGSSLAAFANLIGKMRAETQQMSLPDTVEYVVRASGLADFYQNEREGQDRLEN 497

Query: 529 LDEFLNFTLRNEQNS--------------------------------------------- 543
           L E +N                                                      
Sbjct: 498 LQELVNAAAAFVSEEGYGMNTPARSIPLRPGATAAPELAVATDDPNVVVLDAPGIADPAQ 557

Query: 544 -YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              ++  L   L             A    V++MTVH AKGLE   VF+      +F H+
Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                    ++    EE  RL+YV +TRA ++
Sbjct: 618 NS----------------------------------AMESDGLEEERRLMYVAITRAKER 643

Query: 662 LIIC 665
           L + 
Sbjct: 644 LYLS 647


>gi|222055070|ref|YP_002537432.1| UvrD/REP helicase [Geobacter sp. FRC-32]
 gi|221564359|gb|ACM20331.1| UvrD/REP helicase [Geobacter sp. FRC-32]
          Length = 678

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 92/597 (15%), Positives = 191/597 (31%), Gaps = 120/597 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           LA  +   Y+ A K    +DF+D+I+ T DLL+       +     +   ++++DE QDT
Sbjct: 168 LAAEVYPRYQSALKAFNAIDFDDIIMLTADLLQNHPE---VLKHWQERFRYVMVDEYQDT 224

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ ++  L   +            L  VGD+ QSIY + GA+   +L  ++      
Sbjct: 225 NASQYLLVHLLAGGY----------GNLCVVGDDDQSIYGWRGADVGNILDFEKDF---- 270

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               ++  +I+L  ++RST +IL   + V    E  +                       
Sbjct: 271 ----KECRVIKLEQNYRSTGNILEAANHVIGHNEKRKEKR-------------------- 306

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW            P         +         +   R+A+                 
Sbjct: 307 -LW-----TASGSGRPLDIIVVQDDEEEATTVVERVQVERLAH----------------- 343

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             +   D  +L R    +       RF      I  V        +   +KD ++  + I
Sbjct: 344 -NLAYSDFAILYRTNAQSRAFEEQLRFE----DIPYVLIGGMQFFERKEVKDAISYLKVI 398

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +  D+++ + ++  P     +  + +I      +   ++E   +            +K 
Sbjct: 399 GNANDEIALLRIVNFPKRGIGDSTVVRINQWSMEQGCPLFEAFGRVDEIEGVAEATKLKV 458

Query: 488 IHELIHIAQFCSPHD----FFT---LILGAKKGRQQFISR-----FGNEVIDVLDEFLNF 535
                 +A+  +  +           +        +               + +++ +N 
Sbjct: 459 RDLHRLLAEEMTIFEQEGELAEKGKRLFKRLGLEDELYRTIDDPVLARRKAENIEQIVNS 518

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLV 591
               E+     SL   + ++                  + V +M++H++KGLE P VFLV
Sbjct: 519 MAAYEERIPMPSLSGFLEKVSLMDEDRFSGKDKKEHGRDAVTLMSLHSSKGLEFPFVFLV 578

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  HK                                           +E  RL 
Sbjct: 579 GMEEEILPHKRSIYEDFS----------------------------------VDEERRLC 604

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           YVG+TRA   L++ +        K  +R     + +   +  + ++     ++ ++E
Sbjct: 605 YVGITRARKHLVMTRCLQRKKYGKLQERVPSRFLEEIPAHLVKEQQGIAAKTLTEEE 661


>gi|288801211|ref|ZP_06406666.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331822|gb|EFC70305.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 803

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/575 (18%), Positives = 186/575 (32%), Gaps = 121/575 (21%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L   +   Y +       +DF+DL++NT  L K+ +    IR K     ++IL+DE QDT
Sbjct: 173 LTYSIYKIYTQRCVNANCMDFDDLLMNTYRLFKEHET---IRQKYANLFSYILVDEYQDT 229

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q  ++  LT++           + +  VGD+ QSIY F GA    +L  +++     
Sbjct: 230 NSVQQHIVSLLTKE----------KQHICVVGDDAQSIYGFRGANIDNILSFQKVYP--- 276

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   + +L  ++RST +I+   + +    ++       S                 
Sbjct: 277 -----DSKLFKLEQNYRSTQNIVQAANGLIKYNKHQIPKDVYSMQ--------------- 316

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                           ++       ++      ASI+ R I   I      +        
Sbjct: 317 ----------------EKGEKLVVKEAASDREEASIVCRDI-NKIRRNFDDE-------- 351

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                KD  +L R    +       R      +I  V            IKD++A  R +
Sbjct: 352 ----YKDFAILYRTNSQSRSFEDELR----KMQIPYVIYGGLSFYQRKEIKDVIAYFRLV 403

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY-------EYIQKFANCGISK 480
           ++  D+ +   ++  P        I K I   R    +++       +Y        I+K
Sbjct: 404 VNPSDEEALKRIINYPTRGIGNTTIQKVIDAARLHNVSLWKVISSPAKYNVSLNKGTITK 463

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
               +  I   I +            I+          S  G E     + + EF+N   
Sbjct: 464 LSGFVNLIRGFIELLDKKDAFVLGMQIIKESGITADIFSSTGVEGLSRQENIQEFINSLQ 523

Query: 538 RN-----EQNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                  E+    S+  L   L+Q    +   ++    N+V +MT+H +KGLE P +F+V
Sbjct: 524 EFVDARKEEGEGDSI-GLPDFLQQVALLSDSDSNDDTDNKVSLMTIHASKGLEYPNIFIV 582

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +F    +                                         EE  RLL
Sbjct: 583 GLEENIFPSPMMCDSL----------------------------------RKLEEERRLL 608

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           YV +TRA  +  I    N               V 
Sbjct: 609 YVAITRAEKRCTITFAKNRYRFGNVEFNNRSRFVE 643


>gi|332034801|gb|EGI71338.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 721

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 99/585 (16%), Positives = 201/585 (34%), Gaps = 121/585 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A Y+EA  +  ++DF ++++ + ++LK       +     Q   H+L+DE QD
Sbjct: 167 QMMLRVYAAYQEACDRAGLVDFAEILLRSYEVLKNNPT---LLRHYQQRFAHMLVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ+  ++ L  D             +  VGD+ QSIY + GA+ + + R        
Sbjct: 224 TNTIQYAWLKLLAGDTSS----------IMIVGDDDQSIYGWRGAKIENIKRFLTDFS-- 271

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RSTA IL   + +        G S                   
Sbjct: 272 -------AETIRLEQNYRSTATILKASNALIQNNSERMGKS------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           + +  S  + F+ L +       AR ++  + + +          
Sbjct: 306 --LW-------TDGNDGEPISIYAAFNELDE-------ARFVSSKLRSWLNAGNAL---- 345

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 +D  +L R    + ++            +           +   IKD ++  R 
Sbjct: 346 ------QDAAILYRSNAQSRVLEEAM----LQEGLKYRIYGGMRFFERQEIKDALSYLRL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISK 480
           + +++DD +F  ++ +P     +  +  I    R E+  ++         Q  +      
Sbjct: 396 VGNRQDDAAFERVINTPARGIGDKTLSHIRDCARAESLPLWYAAKAIVEQQHLSGRASGA 455

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
               ++ + ++       + H+     +        + +  G +    ++ L+E ++   
Sbjct: 456 VSKFVELVEQIEDKISDLTLHEQAKYTIQTSGLMAMYQAEKGEKGRARVENLEELISACD 515

Query: 538 RNE----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           + E    +   S LQ  ++               + + V++MT+H+AKGLE P+VF+V  
Sbjct: 516 QYELPEDEEYSSPLQGFLAHTSLESGE--GQAEEHEDAVQMMTLHSAKGLEFPLVFMVGV 573

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F  +                                      +    EE  RL YV
Sbjct: 574 EEGMFPSQQSN----------------------------------EESGRLEEERRLCYV 599

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           GMTRA D+L I    +     +    +    + +   +     +I
Sbjct: 600 GMTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRI 644


>gi|270264844|ref|ZP_06193108.1| hypothetical protein SOD_j00590 [Serratia odorifera 4Rx13]
 gi|270041142|gb|EFA14242.1| hypothetical protein SOD_j00590 [Serratia odorifera 4Rx13]
          Length = 1183

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 133/967 (13%), Positives = 295/967 (30%), Gaps = 137/967 (14%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
            E I   +  +     +      +L  ++G       ++ L                    
Sbjct: 224  EQIVARIDAIKAQWQAAAGDLEALISQSGVDKRSYSSKHLPNWLHKVGEWVVLETQDYQL 283

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
              +    +++++  +  K  P              ++ D   T +      A   +   +
Sbjct: 284  PKELEKFRQSVLLDKTKKGDPP----RHALFVAIDELFDEPLTLRDLIMARALSEIRLSI 339

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                ++ K++   L F+DL+   +  L+  +    +   I Q     +IDE QDT   Q+
Sbjct: 340  ----QQEKRQRAELGFDDLLSRLDSALQ-SEGGERLAQAIRQRYPVAMIDEFQDTDPQQY 394

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             + + L            S   L  +GD KQ+IY+F GA+    +R +       T    
Sbjct: 395  RIFQKLY--------VGRSECGLLLIGDPKQAIYAFRGADIFTYMRARSEVSAHYT---- 442

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RS+  ++  V+ +F+  E      +     +             +    
Sbjct: 443  ------LETNWRSSPAMVGSVNHLFTQVEKPFLFGQIPFIEVA----------AAEKNRG 486

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKK 368
            +  + + Q  P  + W    + +       ++AR  A  I + +         +    K+
Sbjct: 487  LAFELNDQPQPAMQFWLQQGEGVGVSEYQQLMARLCATQIRDWLSAGQRQQAWLVDGEKR 546

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R +QA DI VLVR R +  L+      L      SV  ++R  + D    KDL+ L + +
Sbjct: 547  RAVQASDITVLVRSRNEAALVRDALSAL---AIPSVYLSNRDSVFDTPEAKDLLWLLQAV 603

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L+ E + +    + + L       +  +       + +     ++    +   + V+  +
Sbjct: 604  LAPEQERTLRSAMATGLMGLDAQALDGLNRNERAWDMLVNEFDEYRTLWLR--RGVLPML 661

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYS 545
             E+++             +L +  G ++            L E L      L +E     
Sbjct: 662  REVMNERH------LAENLLASPGGERRLTDVM------HLGELLQEASAQLDSEHALVR 709

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             L + I++  +     +    ++ + V+++T+H +KGLE  +V+L   G+     + +  
Sbjct: 710  WLAQQIAQPNRQSDNQQLRLESDRHLVKVITIHKSKGLEFDLVWLPFVGNFRQQQQVLYH 769

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662
                                    N   + I+  ++    E  RLLYV +TR+       
Sbjct: 770  DRQSFQAL-------------LDLNADEESIEWAEEERLAEDLRLLYVALTRSVYHCSIG 816

Query: 663  ---IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               +I        +   ++     +V      D    + +L         ++        
Sbjct: 817  MAPLIQGTRKKQGDTDLHRSALGYLVQAGQAGDAAWLQQRLQQLAGGGIALSLVEQLDEQ 876

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIK------------NDINEPYILNPSTIDTKGK 767
               P     T        +  +  +                 D+     ++ +       
Sbjct: 877  AWLPQAPALTELAAKSFTRPVQDFWRVTSYTGLQQHGSGLMQDLLPRLDVDAAGEQALDS 936

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                +  +  +    G  +H L + +        +           + +       LL  
Sbjct: 937  EPALTPHTFPRGAAPGTFLHSLFETLDFTQPLDEQWLFEQL---QQQGFAEHWQPILLAW 993

Query: 828  ITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKK--------------------- 860
            +  LL  P+      ++        +E+     I    +                     
Sbjct: 994  MQVLLNVPLNDAGVSLSALAPQHKQAELQFYLPIEKLLQAGELDKLVKKHDPLSARCPTL 1053

Query: 861  -----DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSI 906
                   ++ G ID +   Q   ++ +YK++        +             +  Q  +
Sbjct: 1054 NFQQVQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTRAAMEQAMAEHRYDLQYQL 1113

Query: 907  YEKILKD 913
            Y   L  
Sbjct: 1114 YTLALHR 1120


>gi|260430925|ref|ZP_05784896.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414753|gb|EEX08012.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 800

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 106/621 (17%), Positives = 191/621 (30%), Gaps = 139/621 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+   ++   +DF DL+++   + +     A +  +  +   +IL+DE QDT++ 
Sbjct: 197 ELYAQYQTRLRELNAVDFGDLLLHVVTIFQTH---ADVLEQYQRWFRYILVDEYQDTNIA 253

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 254 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 297

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V    E+  G                      +LW
Sbjct: 298 --GAHVVRLEQNYRSTPHILAAASNVIRGNESRLGK---------------------ELW 334

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +   ++     ++D   +       AR I   I  M G          R +
Sbjct: 335 -------TDKPEGEKVRLIGHWDGEEE-------ARWIGEEIDAMQGG-----TRGVRPM 375

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I +LVR                    +           + + I+D MA  R ++S 
Sbjct: 376 NLDEIAILVRASHQMRAFEDRF----LTIGLPYKVIGGPRFYERMEIRDAMAYFRLVVSP 431

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
           EDDL+F  ++ +P     +     I    R    ++ +              G +  + +
Sbjct: 432 EDDLAFERIVNAPKRGLGDKAQQTIQRTAREHGVSLVQGARIAVEQGLIKGKGGAALREL 491

Query: 485 IKYIHELIHIA------------------------QFCSPHDFFTLILGAKKGRQQFISR 520
           ++ +     +                            S  +   ++L        + + 
Sbjct: 492 VEGLARWNALTRGPRIEIEDDAVIDDGTAPVRYGPPEVSHIELAQIVLDESGYTAHWQND 551

Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
              E    ++ L E +N     E         L   LE     +     +   +V IMT+
Sbjct: 552 KTPEAPGRLENLKELVNQLDNFEN--------LQGFLEHVSLVMDNEQDSGGPKVSIMTL 603

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE P VFL      +F  +                                  + 
Sbjct: 604 HAAKGLEFPAVFLPGWEDGLFPSQRS--------------------------------MD 631

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA +   I   +N     +         + +   +   V  
Sbjct: 632 ESGLKGLEEERRLAYVGITRAEEVCTISFAANRRVFGQWQNAMPSRFIDELPEDHVEVLT 691

Query: 698 IKLTNSINKDEWIAYEWSTHH 718
                   +        +   
Sbjct: 692 PPGLYGGGQMSAGIESRAAQA 712


>gi|114766608|ref|ZP_01445560.1| DNA helicase II, putative [Pelagibaca bermudensis HTCC2601]
 gi|114541148|gb|EAU44201.1| DNA helicase II, putative [Roseovarius sp. HTCC2601]
          Length = 816

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 105/669 (15%), Positives = 196/669 (29%), Gaps = 153/669 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   ++    DF DL+++   + +       I  +  +   +IL+DE QDT++ 
Sbjct: 195 ELYEQYQTRLRELNACDFGDLLLHVVTIFQAHPD---ILEQYQRWFRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V    E   G                      +LW
Sbjct: 296 --GAHVVRLEQNYRSTEHILAAAGGVIRGNEGRLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   +    ++     ++D   +       AR I   I ++               
Sbjct: 333 -------TAAEGGEKVRLIGHWDGEEE-------ARWIGEEIESLQKGTRGLD-----PK 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + + I+D MA  R ++S 
Sbjct: 374 SLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRLVVSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHV 484
           +DDL+F  ++ +P     +     I    R    ++ +  +   + G  K       + +
Sbjct: 430 DDDLAFERIVNTPKRGLGDKAQQLIQHTARQFGVSLLDGARIAVDEGRIKGKGGGHLRQL 489

Query: 485 IKYIHELIHIA-----------------------------------QFCSPHDFFTLILG 509
            + +                                             +  +   +IL 
Sbjct: 490 CENLARWREAMLGPVLRGGEVPDDGIEDAVIDNEEPLTVGETRRGTPRMTHMELAEMILD 549

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                  + +    E    ++ L E +    + E         L   LE     +     
Sbjct: 550 ESGYTAMWQNDKTPEAPGRLENLKELVKALEQFEN--------LQGFLEHVALIMDNETE 601

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +  +V IMT+H AKGLE PVVFL      +F  +                         
Sbjct: 602 ESGAKVSIMTLHAAKGLEFPVVFLPGWEDGLFPSQRS----------------------- 638

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                    +    +   EE  RL YVG+TRA     I    N     +         + 
Sbjct: 639 ---------MDESGQKGLEEERRLAYVGITRAEQLCTISFAGNRRVFGQWQSALPSRFI- 688

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                 E+  ++     +    + A               E  +      +++ ++    
Sbjct: 689 --DELPEQHVEVLTPPGLYGGGFGAAAPYGAGSGLETRAAEANVYNSPGWKRLQERSGQR 746

Query: 747 IKNDINEPY 755
             +   E  
Sbjct: 747 PMSQPRESR 755


>gi|194444795|ref|YP_002042242.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Newport str. SL254]
 gi|194403458|gb|ACF63680.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL254]
          Length = 1181

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 121/876 (13%), Positives = 271/876 (30%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                 +   + ++           V          +    P    W    +S       S
Sbjct: 467  TFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + +   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESVALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHNLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPINPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|29654533|ref|NP_820225.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493]
 gi|29541800|gb|AAO90739.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493]
          Length = 1110

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 148/910 (16%), Positives = 304/910 (33%), Gaps = 138/910 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRD 112
               + +  +++ FLT++   +K +          ++  ++  DL  +L K+ ++     +
Sbjct: 274  DEADLWRGIATLFLTKEGLWRKKLDKNDGFPVEDKKHKQRMKDLLSQLNKN-EKLRLALN 332

Query: 113  RFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                      T          +++   L A      ++   +DF ++ +     L   + 
Sbjct: 333  EVKNCPPIAYTEKQWNIIHGLVSILPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQ 392

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             +    ++D++I H+LIDE QDTS+IQ+ +I  L   +          RTLF VGD  QS
Sbjct: 393  PSDYALQLDEQIQHLLIDEFQDTSIIQFHLIEKLITGWQPKDG-----RTLFLVGDPMQS 447

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  AE    L+ K            + + + L  +FRS  +++   ++ F      +
Sbjct: 448  IYRFRQAEVGLFLQVKNE-----GLGEIQLTPLTLRNNFRSQKNLIDWFNQTFEPTFPKE 502

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              S   + +  H                     ++  N +  ++ S  ++     +A   
Sbjct: 503  ENSHLGSISYSH-----------------SFATNNSINQKNINFYSLLNA-----NALNE 540

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +I   I      +             K I +LVR R     IT   R       I   
Sbjct: 541  ATQIVKIIQGCRSENPE-----------KTIAILVRSRSQLIEITPALRS----ADIPFH 585

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
              +   L   + I+DL++L R +    D ++++ +L++P    +  D+  +    ++   
Sbjct: 586  AVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYANDKPI 645

Query: 466  VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                          + G ++   +   +              +   I  A  G     + 
Sbjct: 646  WVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGGPACLSNS 705

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                      + L         +  +L+ L  +L Q    I        N ++IMT+H A
Sbjct: 706  TELMNTQAYFQLLETL-----ENDFTLERLTQKLNQLYAQIDTDA---KNPIQIMTIHKA 757

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLIK 637
            KGLE   V L     +  S  H   + +           I  P    S+  + + + L +
Sbjct: 758  KGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKR 817

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDE 693
              K+ T  E  RLLYV  TRA +   +    N  +     K   + ++ ++++       
Sbjct: 818  IEKEKTTNEITRLLYVAATRAKESFHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQEAF 877

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                I   +++   +                   + +++L  +   P  L +    +   
Sbjct: 878  EQSIIIFDDTLPSQKGG----------------LKLLRRLTSDWAPPFILKTLPSAESKP 921

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----Y 808
                 P++                     G++IH+ L+ I                   +
Sbjct: 922  LTPFTPASSK-----------------RLGIVIHETLERIANEGLESWDKERIENNKSFW 964

Query: 809  CTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKD 861
              +  +L  + E        ++ ++++ L +      +S      SE  ++      +  
Sbjct: 965  QRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPIT----LVEDK 1020

Query: 862  IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKILKDSYP 916
             I    ID   I +    +I +YK+     + ++         H AQL  Y         
Sbjct: 1021 KIKHFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEAQLQQYANAFHALDS 1080

Query: 917  NKSLVCLLIY 926
             + +   L +
Sbjct: 1081 -RPIKLGLYF 1089


>gi|153950402|ref|YP_001399975.1| exonuclease V subunit beta [Yersinia pseudotuberculosis IP 31758]
 gi|152961897|gb|ABS49358.1| exodeoxyribonuclease V, beta subunit [Yersinia pseudotuberculosis IP
            31758]
          Length = 1220

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 128/989 (12%), Positives = 295/989 (29%), Gaps = 164/989 (16%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
            +   +  L         +  +L   +G       ++ L    +   +             
Sbjct: 226  VVTQIDALKAEWRLAAPELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPK 285

Query: 76   QKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
            +    +++++   T++       L   +    ++ + +RD      + +   +       
Sbjct: 286  ELEKFRQSVLLEKTKKGAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSV------ 339

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                 ++ K++   L F+DL+   +  L++      +   I       +IDE QDT   Q
Sbjct: 340  -----QQEKRQRAELGFDDLLSKLDAALQQSG-GELLAQSIRTRYPVAMIDEFQDTDPQQ 393

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + +  ++                L  +GD KQ+IY+F GA+    +R +       T   
Sbjct: 394  YRIFHTVYGG--------QEACALLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT--- 442

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                   L  ++RS+  ++  V+++FS+         +    I   +++     + ++  
Sbjct: 443  -------LETNWRSSFPMVQSVNRLFSLVNTPFLF--EQIPFINVAAAKKNHDLSFEI-- 491

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGK 367
                    +  P    W    D +       ++AR+ A  I + +         + +   
Sbjct: 492  ------KGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELLTTKG 545

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             + +QA DI +LVR R +  LI      L      SV  ++R  + +    KDL+ L + 
Sbjct: 546  PKPVQASDITILVRSRAEAALIRDALSAL---AIPSVYLSNRDSVFETTEAKDLLWLLQA 602

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +L+ E + +    + + +       +  +       + + +    +        + V+  
Sbjct: 603  VLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQR--RGVLPM 660

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            + E++              +L    G ++            L E L        + ++ +
Sbjct: 661  LREMMARRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSEHALI 708

Query: 548  QELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            + L  ++ Q      + +    ++ + VR++T+H +KGLE P+V+L   G+       + 
Sbjct: 709  RWLAQQIAQPNPQSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLY 768

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-- 662
                                     N   +     ++    E  RLLYV +TR+      
Sbjct: 769  HDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRSVYHCSV 815

Query: 663  ----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW-----IAYE 713
                +I        E   ++     +V      D  V   KLT                 
Sbjct: 816  GIAPLIKGGRKKQGESDMHRSALGYLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEP 875

Query: 714  WSTHHPENTPLEREETIKQ--LMDEQKIPKKLFSPIKNDINEPYILNPSTID-------- 763
                  +  P    E   +      Q   +               L  S           
Sbjct: 876  PDDKPWQPQPEALPELTARHFTRKMQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGA 935

Query: 764  ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
                                 + +  +  +  +    G  +H LL+ +      +     
Sbjct: 936  PLQVLLPRLDIDAVGEQAVVTEDDHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLS 995

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK 859
                    + +  +    L   +  +++ P+      +         +E+     I+   
Sbjct: 996  ERL---QQQGFSEQWAPVLHQWLNDIVQTPLTDTGATLAGLSPERKQAELQFYLPIDSLL 1052

Query: 860  K--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
            +                            ++ G ID +   Q   ++ +YK++       
Sbjct: 1053 RAEVLDRLIKQYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSR 1112

Query: 894  EHIPY---------THIAQLSIYEKILKD 913
             +             +  Q  +Y   L  
Sbjct: 1113 AYTVEAMTQAMAEHRYDLQYQLYTLALHR 1141


>gi|323345466|ref|ZP_08085689.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269]
 gi|323093580|gb|EFZ36158.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269]
          Length = 790

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 116/697 (16%), Positives = 208/697 (29%), Gaps = 131/697 (18%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            + +   A + +   + A Y    K++  +DF+DL++ T  L  + D    IR K     
Sbjct: 163 AIRRDQEAHVPMVGAIYAAYARQCKQSNAMDFDDLLLLTYRLFNEHDD---IRTKYADRF 219

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            ++L+DE QDT+  Q  V+  LT++           R +  VGD+ QSIY F GA    +
Sbjct: 220 RYVLVDEYQDTNYAQQCVVLQLTKE----------HRQICVVGDDAQSIYGFRGANIDNM 269

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L  ++I         ++  + +L  ++RST  I+   + +    E            I  
Sbjct: 270 LGFRQIY--------KEVRLFKLEQNYRSTQRIVQAANSLIKHNE----------RQIPK 311

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                   G   +++   S  +                          A  +   I  + 
Sbjct: 312 EIFSKNDEGEKIVYKPAYSDKE-------------------------EAIIVCKDIKRIK 346

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
             D           +  D  +L R    +       R       I               
Sbjct: 347 RQD---------DCEYNDFAILYRTNSQSRSFEEEMR----RQHIPYRIYGGLSFYQRKE 393

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY-------EY 469
           IKD++A  R  ++  D  +   ++  P        + KI  T    + +++       +Y
Sbjct: 394 IKDIIAYFRMAVNPFDSEALKRIINYPTRGIGNTTMSKITSTANKHSVSLWNVILDPQQY 453

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VI 526
                N  + K       I E +        +     ++ A     +  S    +     
Sbjct: 454 GLDINNTTLQKLHGFKTLITEFVERVATADAYTLGKEMIKASGISAEIYSGTDPDDLSRQ 513

Query: 527 DVLDEFLNFTLRN-EQNSYSSLQE---LISELEQYP-PTIKRAHSANHNEVRIMTVHTAK 581
           + LDEFL       E      L+    L   L++    T   +   + ++V +MT+H AK
Sbjct: 514 ENLDEFLAGMQDFVEGRKEEGLENEVYLTDFLQEVSLLTDIDSEDDSDSKVSLMTIHAAK 573

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VF+V     +F                                           
Sbjct: 574 GLEFSTVFVVGLEENIFPSPLSCNSMRELEEERRLL------------------------ 609

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                     YV +TRA    I+    N     +    T    + D      +++     
Sbjct: 610 ----------YVAITRAKKHCILTNAKNRYRFGRMEFDTPSRFLRDLDAKYLKIESETEE 659

Query: 702 NSINKDEWIA------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                  +              +P N       +            +   P+ +      
Sbjct: 660 EDATTSYFARSRNQWSERREQKYPANRSYMERHSWGDANYGYNDHIQNNRPVASQFRADI 719

Query: 756 I-----LNPSTIDTKGKTNL-ESLLSDNQTFNRGLII 786
                  +PS I T     L E  + ++Q F  G +I
Sbjct: 720 KPKITGRHPSDISTANSVLLSEGDIIEHQRFGVGTVI 756


>gi|51597340|ref|YP_071531.1| exonuclease V subunit beta [Yersinia pseudotuberculosis IP 32953]
 gi|108806489|ref|YP_650405.1| exonuclease V subunit beta [Yersinia pestis Antiqua]
 gi|108813141|ref|YP_648908.1| exonuclease V subunit beta [Yersinia pestis Nepal516]
 gi|145598977|ref|YP_001163053.1| exonuclease V subunit beta [Yersinia pestis Pestoides F]
 gi|149366978|ref|ZP_01889011.1| exodeoxyribonuclease V beta chain [Yersinia pestis CA88-4125]
 gi|162420885|ref|YP_001607582.1| exonuclease V subunit beta [Yersinia pestis Angola]
 gi|165927070|ref|ZP_02222902.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
            Orientalis str. F1991016]
 gi|166011533|ref|ZP_02232431.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166212838|ref|ZP_02238873.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|167399985|ref|ZP_02305503.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167419811|ref|ZP_02311564.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
            Orientalis str. MG05-1020]
 gi|167425407|ref|ZP_02317160.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
            Mediaevalis str. K1973002]
 gi|167468472|ref|ZP_02333176.1| exonuclease V subunit beta [Yersinia pestis FV-1]
 gi|170023292|ref|YP_001719797.1| exonuclease V subunit beta [Yersinia pseudotuberculosis YPIII]
 gi|186896447|ref|YP_001873559.1| exonuclease V subunit beta [Yersinia pseudotuberculosis PB1/+]
 gi|218928189|ref|YP_002346064.1| exonuclease V subunit beta [Yersinia pestis CO92]
 gi|229837728|ref|ZP_04457888.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
            Pestoides A]
 gi|229840949|ref|ZP_04461108.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis biovar
            Orientalis str. PEXU2]
 gi|229843049|ref|ZP_04463199.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis biovar
            Orientalis str. India 195]
 gi|229903584|ref|ZP_04518697.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
            Nepal516]
 gi|270487366|ref|ZP_06204440.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis KIM D27]
 gi|51590622|emb|CAH22263.1| exodeoxyribonuclease V beta chain [Yersinia pseudotuberculosis IP
            32953]
 gi|108776789|gb|ABG19308.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Yersinia pestis
            Nepal516]
 gi|108778402|gb|ABG12460.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Yersinia pestis
            Antiqua]
 gi|115346800|emb|CAL19686.1| exodeoxyribonuclease V beta chain [Yersinia pestis CO92]
 gi|145210673|gb|ABP40080.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Yersinia pestis
            Pestoides F]
 gi|149290592|gb|EDM40668.1| exodeoxyribonuclease V beta chain [Yersinia pestis CA88-4125]
 gi|162353700|gb|ABX87648.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis Angola]
 gi|165920966|gb|EDR38190.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
            Orientalis str. F1991016]
 gi|165989481|gb|EDR41782.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166206130|gb|EDR50610.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|166962552|gb|EDR58573.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
            Orientalis str. MG05-1020]
 gi|167050693|gb|EDR62101.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167055807|gb|EDR65591.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis biovar
            Mediaevalis str. K1973002]
 gi|169749826|gb|ACA67344.1| exodeoxyribonuclease V, beta subunit [Yersinia pseudotuberculosis
            YPIII]
 gi|186699473|gb|ACC90102.1| exodeoxyribonuclease V, beta subunit [Yersinia pseudotuberculosis
            PB1/+]
 gi|229679354|gb|EEO75457.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
            Nepal516]
 gi|229689925|gb|EEO81984.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis biovar
            Orientalis str. India 195]
 gi|229697315|gb|EEO87362.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis biovar
            Orientalis str. PEXU2]
 gi|229704105|gb|EEO91117.1| exonuclease V (RecBCD complex), beta subunit [Yersinia pestis
            Pestoides A]
 gi|270335870|gb|EFA46647.1| exodeoxyribonuclease V, beta subunit [Yersinia pestis KIM D27]
          Length = 1220

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 128/989 (12%), Positives = 295/989 (29%), Gaps = 164/989 (16%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
            +   +  L         +  +L   +G       ++ L    +   +             
Sbjct: 226  VVTQIDALKAEWRLAAPELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPK 285

Query: 76   QKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
            +    +++++   T++       L   +    ++ + +RD      + +   +       
Sbjct: 286  ELEKFRQSVLLEKTKKGAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSV------ 339

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                 ++ K++   L F+DL+   +  L++      +   I       +IDE QDT   Q
Sbjct: 340  -----QQEKRQRAELGFDDLLSKLDAALQQSG-GELLAQSIRTRYPVAMIDEFQDTDPQQ 393

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + +  ++                L  +GD KQ+IY+F GA+    +R +       T   
Sbjct: 394  YRIFHTVYGG--------QEACALLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT--- 442

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                   L  ++RS+  ++  V+++FS+         +    I   +++     + ++  
Sbjct: 443  -------LETNWRSSFPMVQSVNRLFSLVNTPFLF--EQIPFINVAAAKKNHDLSFEI-- 491

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGK 367
                    +  P    W    D +       ++AR+ A  I + +         + +   
Sbjct: 492  ------KGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELLTTKG 545

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             + +QA DI +LVR R +  LI      L      SV  ++R  + +    KDL+ L + 
Sbjct: 546  PKPVQASDITILVRSRAEAALIRDALSAL---AIPSVYLSNRDSVFETTEAKDLLWLLQA 602

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +L+ E + +    + + +       +  +       + + +    +        + V+  
Sbjct: 603  VLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQR--RGVLPM 660

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            + E++              +L    G ++            L E L        + ++ +
Sbjct: 661  LREMMARRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSEHALI 708

Query: 548  QELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            + L  ++ Q      + +    ++ + VR++T+H +KGLE P+V+L   G+       + 
Sbjct: 709  RWLAQQIAQPNPQSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLY 768

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-- 662
                                     N   +     ++    E  RLLYV +TR+      
Sbjct: 769  HDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRSVYHCSV 815

Query: 663  ----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW-----IAYE 713
                +I        E   ++     +V      D  V   KLT                 
Sbjct: 816  GIAPLIKGGRKKQGESDMHRSALGYLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEP 875

Query: 714  WSTHHPENTPLEREETIKQ--LMDEQKIPKKLFSPIKNDINEPYILNPSTID-------- 763
                  +  P    E   +      Q   +               L  S           
Sbjct: 876  PDDKPWQPQPEALPELTARHFTRKMQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGA 935

Query: 764  ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
                                 + +  +  +  +    G  +H LL+ +      +     
Sbjct: 936  PLQVLLPRLDIDAVGEQAVVTEDDHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLS 995

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK 859
                    + +  +    L   +  +++ P+      +         +E+     I+   
Sbjct: 996  ERL---QQQGFSEQWAPVLHQWLNDIVQTPLTDTGATLAGLSPERKQAELQFYLPIDSLL 1052

Query: 860  K--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
            +                            ++ G ID +   Q   ++ +YK++       
Sbjct: 1053 RAEVLDRLIKQYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSR 1112

Query: 894  EHIPY---------THIAQLSIYEKILKD 913
             +             +  Q  +Y   L  
Sbjct: 1113 AYTVEAMTQAMAEHRYDLQYQLYTLALHR 1141


>gi|311696294|gb|ADP99167.1| UvrD/REP helicase [marine bacterium HP15]
          Length = 721

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 102/587 (17%), Positives = 204/587 (34%), Gaps = 119/587 (20%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILID 183
             L++   +   YE+  ++  ++DF +L++ +++L L + +    +         HIL+D
Sbjct: 166 HFLSIMLKIYRQYEKLCQQGGLVDFGELLLRSHELWLHRPE----LLAHYQSRFQHILVD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ IQ+  ++ L           S+   +  VGD+ QSIY + GA+ + + + +R 
Sbjct: 222 EFQDTNTIQYAWLQVLA----------SNRVPMTVVGDDDQSIYGWRGAKVENIQQYQRD 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        ++ L  ++RST  IL   + V +  +   G                 
Sbjct: 272 FPN--------ARLVRLEQNYRSTQMILKAANAVIANNQGRLGK---------------- 307

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                +LW             +  S  + F+   +       A  IA +IS  +    + 
Sbjct: 308 -----ELW-------TDGPEGEPISLYAAFNEQDE-------ANYIADSISAWVQDGNL- 347

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      +  +L R    + ++            I           D   I++ +A
Sbjct: 348 ---------RSESAILYRSNAQSRVLEESL----MRQGIPYRVYGGLRFYDRQEIRNALA 394

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK-- 480
             R +  + DD +F  ++  P        + ++      ++ +++E  ++  + G  K  
Sbjct: 395 YLRLVQYRRDDAAFERVVNVPPRGIGAKSLAELREYATEQSISLWESAERLLDAGQVKGR 454

Query: 481 ----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFL 533
                Q  I  I  L  +    S H      +                G   ++ L+E +
Sbjct: 455 AKTGLQSFIAIIEGLSEMVGDASLHGLMKQTIENSGLKDYHASEKGEKGQARVENLEELV 514

Query: 534 NFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           N     E ++   +L E I++              + + V++MT+H+AKGLE P+VFL  
Sbjct: 515 NALSDYEVEDGVDALSEFIAQAALDAGES--QAGDHEDSVQLMTLHSAKGLEFPLVFLAG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F H    +                                       EE  RL Y
Sbjct: 573 VEEGLFPHGMSLEEPG----------------------------------RMEEERRLAY 598

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           VG+TRA  +L++    +     +         V +   +  +  +++
Sbjct: 599 VGITRAMKKLVLTYAESRRLYGQEKFNALSRFVREIPGDCLQEVRLR 645


>gi|217031822|ref|ZP_03437325.1| hypothetical protein HPB128_199g30 [Helicobacter pylori B128]
 gi|298735552|ref|YP_003728073.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Helicobacter
           pylori B8]
 gi|216946474|gb|EEC25076.1| hypothetical protein HPB128_199g30 [Helicobacter pylori B128]
 gi|298354737|emb|CBI65609.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Helicobacter
           pylori B8]
          Length = 681

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/572 (16%), Positives = 184/572 (32%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------CTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              I++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKIVKLETNYRSSAEILACANSLISHNQHRHVKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K         +  + 
Sbjct: 388 RFFIKRVLNKPPRGLGKITQEWIFSLLDEEDLNLEEALKLGAFKDKLNPKNEYALKKFMT 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVEEFCARFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +    +    + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDVHN--AENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQLLKQDKPP 619


>gi|270264259|ref|ZP_06192526.1| DNA helicase II [Serratia odorifera 4Rx13]
 gi|270041908|gb|EFA15005.1| DNA helicase II [Serratia odorifera 4Rx13]
          Length = 723

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 116/722 (16%), Positives = 225/722 (31%), Gaps = 132/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 33  GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 92

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    + + +   LK  +K    +  +   R         
Sbjct: 93  FHGLAHRLLRAHHMDANLPQDFQILDSDDQFRLLKRIVKALNIDEKQWPPRQAMWYINGK 152

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +             +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 153 KDEGLRPQHVETYNNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---I 209

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   ++L+DE QDT+ IQ+  IR L+ +             +  VGD+ QSIY +
Sbjct: 210 LNHYRERFTNVLVDEFQDTNSIQYAWIRLLSGN----------NSNVMIVGDDDQSIYGW 259

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R  +               + L  ++RST++IL   + + +      G + 
Sbjct: 260 RGAQVENIQRFLKDFP--------GAQTVRLEQNYRSTSNILKAANTLIANNGGRMGKN- 310

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +        R +
Sbjct: 311 --------------------LW-------TEGAEGEPISIYCAFNELDES-------RFV 336

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     D  +L R    + ++            +       
Sbjct: 337 VGRIKTWQENGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGG 382

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD +A  R I ++ DD +F  ++ +P     +  + ++    R    T+++
Sbjct: 383 QRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGIGDRTLDEVRRTARDRQLTLWQ 442

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG---RQQFIS 519
             +        A    S  Q   + +  L H       H     ++         +Q   
Sbjct: 443 ATRALLQDKVLAGRAASALQRFTELVDSLAHETADMPLHVQTDRVIRDSGLFIMYEQEKG 502

Query: 520 RFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
             G   I+ L+E +  T +   Q+    L  L + L        +    A  + V++MT+
Sbjct: 503 EKGQARIENLEELVTATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDAVQLMTL 562

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+VF+V     +F  +                                    
Sbjct: 563 HSAKGLEFPLVFIVGMEEGMFPSQMSLDEGG----------------------------- 593

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA  +L +          K         + +   +     +
Sbjct: 594 -----RLEEERRLAYVGLTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEDCVEEVR 648

Query: 698 IK 699
           ++
Sbjct: 649 LR 650


>gi|304413632|ref|ZP_07395076.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella
           insecticola LSR1]
 gi|304283723|gb|EFL92117.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella
           insecticola LSR1]
          Length = 715

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 120/693 (17%), Positives = 225/693 (32%), Gaps = 133/693 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    +S  L+++  W L    +S  +             +  + + L +A         
Sbjct: 28  GAGSGKSRVLVHRIAWLLSQEDISPFSIIAVTFTNKSAAEMRHRIENLGRAH-NGMWVGT 86

Query: 66  FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L+   L          ++    + + +   +K  +K    +  K   R     +   
Sbjct: 87  FHGLAHRLLRIHHLAANLPQDFQVLDSDDQLRFVKRIIKSLDLDEKKWSPRQAISYINGK 146

Query: 123 TLASLT-------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
               L              +   +   Y +A  +   +DF +L++  ++L         I
Sbjct: 147 KDMMLRPENIENYGNPVENIWLRIYQAYHDACHRTGSVDFAELLLRAHELWLNNPC---I 203

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                Q  +HIL+DE QDT+ IQ+  I  L  D            T+  VGD+ QSIY +
Sbjct: 204 LQHYRQRFSHILVDEFQDTNKIQYAWIHLLAGD----------QATVMIVGDDDQSIYGW 253

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +                    + L  ++RST  ILT  + + +      G + 
Sbjct: 254 RGAQVENIQLFLNDF--------TGAETLRLEQNYRSTHHILTAANSLIAHNTKRMGKN- 304

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW         +   +  S  S  + L +       AR +
Sbjct: 305 --------------------LW-------TKRATGEAISLYSAINELDE-------ARFV 330

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I        +           KD  VL R    + ++           ++       
Sbjct: 331 VSKIKTWQSQGGLL----------KDCAVLYRSNAQSRVLEDAL----LQARVLYRIYGG 376

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
               +   IKD +A  R I ++ DD++F  ++ +P     +  +  I    R +  T+++
Sbjct: 377 QRFFERQEIKDALAYLRLIANRHDDVAFERVVNTPPRGIGDRTLETIRQYARDQQLTLWQ 436

Query: 469 ------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                   Q  +N   +  Q  I+ +  L +     S       ++ A      +    G
Sbjct: 437 TTLIVLQNQILSNRAAASLQRFIELVEALANETAEMSLQSQTERVIRASGLWTMYQEEKG 496

Query: 523 NE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVH 578
            +    I+ L+E +  T +   +   ++  L + L        +R    + + V++MT+H
Sbjct: 497 EKGQARIENLEELITATQQY-HHEDKTMLPLSAFLSYAALEAGERQPDGDQDAVQLMTLH 555

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE   VF+V     +F  +     +                               
Sbjct: 556 SAKGLEFLQVFIVGMEEGMFPSQMALNENG------------------------------ 585

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                 EE  RL YVG+TRA  +L +    +  
Sbjct: 586 ----RLEEERRLAYVGVTRAMQKLTLSYAESRR 614


>gi|294807341|ref|ZP_06766153.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD
           CC 1b]
 gi|294445471|gb|EFG14126.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 614

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 90/547 (16%), Positives = 179/547 (32%), Gaps = 121/547 (22%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y +  ++   +DF+DL++ T  L +       +  +   + +++L+D
Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPD---VLTRYQDQFHYVLVD 228

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  +I  LT++           + +  VGD+ QSIYSF GA+   +L   +I
Sbjct: 229 EYQDTNYAQHSIILQLTKE----------NQRICVVGDDAQSIYSFRGADIDNILYFTKI 278

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E     +  S            
Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +A  I+ +       
Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRREYH-- 353

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      +  +L R    + +     R       +               IKD++A
Sbjct: 354 -------YGYAEFAILYRTNAQSRIFEEALR----KRSMPYKIYGGLSFYQRKEIKDVIA 402

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI +   +   +++  + +          
Sbjct: 403 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATNHGVSLWAAVCEPLSYGLDINK 462

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +K Q   + I   I      + ++  T I+               E     + ++E 
Sbjct: 463 GTHAKLQGFRELIEGFIADQADKNAYEIGTDIIRQSGIINDVCQDTSPENLSRKENIEEL 522

Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +N         + E N   SL + +SE+           + +  +V +MTVH+AKGLE  
Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGEKVTLMTVHSAKGLEFK 581

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    +                                         EE
Sbjct: 582 NVFVVGLEENLFPSGMVGDSP----------------------------------RALEE 607

Query: 647 YNRLLYV 653
             RL YV
Sbjct: 608 ERRLFYV 614


>gi|290476676|ref|YP_003469581.1| exonuclease V subunit beta [Xenorhabdus bovienii SS-2004]
 gi|289176014|emb|CBJ82817.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Xenorhabdus bovienii
            SS-2004]
          Length = 1205

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 136/923 (14%), Positives = 284/923 (30%), Gaps = 151/923 (16%)

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
            L +    +    T++       +   +     + + +RD   +  + +           +
Sbjct: 290  LDKFSQSRLAEKTKKGETPQHPVFTAIDDLYQQPLTLRDIIISKAIVE-----------I 338

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                 + K     + F+DL+   +  L++ +    +   I Q     +IDE QDT   Q+
Sbjct: 339  RQSVNQEKLMRGHMGFDDLLTRLDSALQR-EGGKQLATTIRQRYPVAMIDEFQDTDPQQY 397

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             + +++  D    +   +    L  +GD KQ+IY+F GA+    +R +       T    
Sbjct: 398  RIFQAIYCDQPENEQRENG---LMFIGDPKQAIYAFRGADIFTYIRARSQVSAHYT---- 450

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RS+  ++  V+K+FS  E     S+     ++            +    
Sbjct: 451  ------LETNWRSSVPMVQAVNKLFSHTERPFLFSQIPFINVK----------AAEKNHN 494

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM-----IGTDTIFSNGKK 368
            +      Q     + W    + + +      +AR  A  I +       G   +    K 
Sbjct: 495  LRFLFHHQEQAALQFWLQPGEGVAKGGYEQSMARHCAAQIRDWLLAGQQGQALLQQAEKS 554

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            + + A DI VLVR R++  +I      LK     SV  ++R  + D    KDL+ L + +
Sbjct: 555  QPVTAADITVLVRNRREAAMIRDELNALKIP---SVFLSNRDSVFDTPEAKDLLWLLQAV 611

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            LS E +      L S LF  S   I ++           E          S +  + +  
Sbjct: 612  LSPEKERELRSALASSLFGLSAQQIDQLNHD--------ETAWDHLVDEFSGYARLWRSR 663

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL---NFTLRNEQNSYS 545
              L  +      +     +L    G ++            + E L   +  L +E     
Sbjct: 664  GVLPMLRAVMVKYQVAENLLAGYDGERRLTDVM------HIGELLQETSLQLDSEHAVVR 717

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             L + IS  +    T +    ++ + V+I T+H +KGLE P+V L    S     + I  
Sbjct: 718  WLAQQISRPDPQSETQQMRLESDKHLVQICTIHKSKGLEYPLVCLPFICSFRKQEQAIYH 777

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662
                   +                           +    E  RLLYV +TR+       
Sbjct: 778  DRQSFETHFSIFQDDEK-------------KALADEERLAEDLRLLYVALTRSIYHCSVG 824

Query: 663  ---IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-------DEWIAY 712
               +I  +   +     +      ++      D ++    L    N        +E    
Sbjct: 825  VAPLIQGNKKKAGNTDLHLSALGYLLQKGQQGDAQLLADSLNELSNDDIQVTLMEETDDV 884

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK---------------------NDI 751
            +W + +  ++ L   +  + + D+ ++                                I
Sbjct: 885  QWCSQNNNDSLLAARKFRRSIQDDWRVTSYSGLQYSSSHSISHAYTSAFGESVDVIVQSI 944

Query: 752  NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
                 ++      +  ++  +  +  +  + G  +H +L+ +      ++          
Sbjct: 945  APKLDIDARGEKQEEPSSQMTPHTFPRGASAGTFLHSILEDLDFSELPEQVWLAEKL--- 1001

Query: 812  NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVSVS------------- 852
             A  +       L   I   +          +         SE+                
Sbjct: 1002 TAAGFDENWAPVLQQWIADFVTAELDEQGIQLANVPRHQQQSEMQFYLPVDKLLHSHALS 1061

Query: 853  -------------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY- 898
                           ++  +   ++ G ID +   Q   ++ +YK++        +    
Sbjct: 1062 ALTRRYDPLSAQCAPLSFHQVKGMLKGFIDLVFCWQGKFYVVDYKSNWLGESSQSYTQEA 1121

Query: 899  --------THIAQLSIYEKILKD 913
                     +  Q  +Y   L  
Sbjct: 1122 MAKAMIEHRYDLQYQLYTLALHR 1144


>gi|326565010|gb|EGE15210.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 103P14B1]
 gi|326574116|gb|EGE24064.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 101P30B1]
          Length = 689

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/601 (17%), Positives = 203/601 (33%), Gaps = 126/601 (20%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +   +  +K+   +++ I  +D   T    +           L   YE  
Sbjct: 139 RDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLDDPEDLGFVH-----LYELYERN 193

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI     +L++      ++ K    I ++L+DE QDT+  Q+E+I+ L 
Sbjct: 194 LRAYNAVDFDDLITMPVRILRESHE---VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLV 250

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                             VGD+ QSIY++ GA+P+ +   K+              +++L
Sbjct: 251 GRL----------GRFTVVGDDDQSIYTWRGAKPENMALLKQDFPN--------LEVVKL 292

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  IL   + V +  E+    S                     LW         
Sbjct: 293 EQNYRSTNHILGAANAVIANNEHMFEKS---------------------LW-------SD 324

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           + + ++    +  +   +       A R+A  I          ++  +         VL 
Sbjct: 325 KGDGEKIRVITCNNDFDE-------AERVAKEI---------LTHRLRNNQTWDKYAVLY 368

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R       +    R L+    I    +          IKDLM   R I++ +DD +F+ +
Sbjct: 369 RSNFQARALEAQLRQLE----IPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRV 424

Query: 441 LKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI--SKFQHVIKYIHELI----- 492
           + +P        + K+         ++     +        +K   +I+   E I     
Sbjct: 425 INTPKRGIGSVTLEKLGLFAQHCGTSLLGACTRAGVKDALGAKAGAIIESFGEFINYYTH 484

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFL----NFTLRNEQNS 543
            +     P      ++              N       +D ++           R +   
Sbjct: 485 QLHDNSDPMPLVRQMITETGYIDYVKESSKNPQQEKGRLDNIEALYLSIAALINRADDEH 544

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             ++  +I ++       ++    N N+V +MT+H AKGLE   V+++    ++  H + 
Sbjct: 545 DKTIDAVIRKMVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDYVYIIGCEEKLLPHVNS 604

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                 +  EE  RL+YVG+TRA  +L 
Sbjct: 605 IMS-----------------------------------ANIEEERRLMYVGITRAKSELT 629

Query: 664 I 664
           +
Sbjct: 630 L 630


>gi|95929099|ref|ZP_01311844.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
 gi|95135000|gb|EAT16654.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684]
          Length = 676

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/596 (16%), Positives = 199/596 (33%), Gaps = 121/596 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L   +   Y+++ K    +DF+D+++ T  L ++    A +  +  Q+  +I++DE QDT
Sbjct: 166 LTAEIYPRYQKSLKACNAIDFDDILLLTIRLFER---FADVLDRYRQQFRYIMVDEYQDT 222

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q+ ++R L+          S+   L  VGD+ QSIY + GA+P  +L   +      
Sbjct: 223 NHVQYHMLRLLS----------SAHHNLCVVGDDDQSIYGWRGAKPGNILDFGKDFP--- 269

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +I+L  ++RST +IL   + +    ++  G                      
Sbjct: 270 -----GARVIKLEQNYRSTGNILAAANALIVHNQDRHGKK-------------------- 304

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW        +        +    D   +       A  +   I              +
Sbjct: 305 -LW-------TAGDAGADVVYRCCDDGEDE-------AMAVVEVIHR---------ERFR 340

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              Q +D  +L R    +       R+      I  V        D   +KD +A  + +
Sbjct: 341 HQYQYRDFAILYRTNGQSRAFEEQLRYE----NIPYVLIGGQQFFDRKEVKDALAYLKVM 396

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFA------NCGISKF 481
            +  D+++ + +L  P     E    ++       E ++++ +   A             
Sbjct: 397 ANPLDEVNLLRILNYPKRGIGETTAERLIQASVVGECSLWDVLHHSAGIEGIGEKAGEAI 456

Query: 482 QHVIKYIHELIHIAQF-----CSPHDFFTLI-LGAKKGRQQFISRFGNEVIDVLDEFLNF 535
           Q+ I  +       +       +  + F  + L  +  RQ    +     ++ L E +N 
Sbjct: 457 QNFIALMERYQRRYRQPGQLVTTTQELFRELQLEEELYRQADDPKKARRRVENLHEVVNA 516

Query: 536 TLRNEQNS-YSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFL 590
               E+    ++L+  + ++           S       + V +M++H++KGLE P VFL
Sbjct: 517 VSSYEEREAIATLESFLEKVSLLDRDEPPRGSKEEKLKQDAVVLMSLHSSKGLEFPCVFL 576

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V        H                                       +     E  RL
Sbjct: 577 VGMEEGSLPHN----------------------------------KTIEETQDVSEERRL 602

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            YVG+TRA  QL +   +      +   R     + +   +    +K     +  +
Sbjct: 603 CYVGITRARQQLTLLGAARRKKYGRLQPREVSRFLSEIPESLIFHEKGDRQAAPPE 658


>gi|262276563|ref|ZP_06054372.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886]
 gi|262220371|gb|EEY71687.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886]
          Length = 1187

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 134/972 (13%), Positives = 281/972 (28%), Gaps = 140/972 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFFL 74
             K  W      +  +     +   + +   L     +    AS+          L  F  
Sbjct: 230  VKTAWLAAVADLEALIAGSGVDKRSYSKKSLPNWLREVTDWASRPATGYGLPKNLDRFSA 289

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
            +          T++       + + +         ++D    + + +  L          
Sbjct: 290  SMLAEK-----TKKGEVPVHPVFDAIDTLVANPPTLKDALTAHAIREVRLLLA------- 337

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
                + K++   L F+DL+   +  L + +    +  +I +     +IDE QDT   Q++
Sbjct: 338  ----QEKRRFGWLSFDDLLSQLSQALVQDEQG-LLAARIRELYPVAMIDEFQDTDPQQYQ 392

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            +   +                LF +GD KQ+IY+F GA+    +  +R            
Sbjct: 393  IFSDIY--------MAQPECGLFMIGDPKQAIYAFRGADIFTYIHARRQVADHYN----- 439

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                 L +++RSTA ++  V+ VF    +     +D    I             + WE  
Sbjct: 440  -----LGINWRSTASVVDAVNHVFKEAASPFVYDDD----IPFTPVAHSPGAEKKQWEVD 490

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR-VIQA 373
              +  +      E+         +   A   A  I   ++     +  F+ G+ R  ++A
Sbjct: 491  GVKQAAMTFWLDETLGLVTRGDYETQMADATASSIREVLTKAAEGNAFFTKGEARNPVKA 550

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             DI VLVR   +   +    R L      SV  ++R  +       D+  L   +L+ + 
Sbjct: 551  GDIAVLVRTGSEAAKVK---RALARQGIASVYLSNRDSVFSSPLAADVQRLLMAVLTPDS 607

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
            + +    L S LF  +  +I  +       E        + +   S  + V+  + +++ 
Sbjct: 608  ERTLRAALASGLFALTAGEIDTLNHDEKAWERAVVEFSTYQSVWFS--RGVMPMLRQVMQ 665

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                         +L  ++G +             L E L    +   + ++ ++ L   
Sbjct: 666  RRG------IAERLLSEEQGERALTDLM------HLGELLQQASQTLDSHHALIRWLADH 713

Query: 554  LEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            ++         +    +  + V+I+T+H +KGLE  +V+L    +               
Sbjct: 714  IDNPNGNSEEQQVRLESERDLVQIVTIHKSKGLEYNLVYLPFACNF-----RPSDRPFFH 768

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              N  P + +  P            I+   K    E  RL+YV +TRA     I      
Sbjct: 769  DENHTPTLSLSEPDV---------AIEQADKERLAEDLRLVYVALTRAVYGCFIGLAPLK 819

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
              +K S     +                    +         +     P    +E    +
Sbjct: 820  DGKKSSGDTGLHKSALGYLLQKGDATDAAGLVAAVDALVANTDSMVRRPPPPRVEGLLAV 879

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS--------------- 775
            +   DE    +     I+ D                                        
Sbjct: 880  EAASDEAIEARNFTGHIRRDWRLTSYSGLVKQGHASALPDVPAFDIDAAEEKQETEETQT 939

Query: 776  --------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFI----TSYCTKNAKLWPAKEYKN 823
                      +    G  +H L + +    +   ++       +   +N         + 
Sbjct: 940  EAALSIFQFPKGARPGTFLHTLFENVGFGDDMYSEDVAGMIRHALLLENYDEHWVPVLQK 999

Query: 824  LLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCPKKDII----------------- 863
            LL  +     N     +    +    +E+     +       +                 
Sbjct: 1000 LLSDVVNQPLNAQGLTLAHIDAPARLTEMEFVMPVERLDSGRLNRLIAEHDPLSAKAGEL 1059

Query: 864  --------ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSI 906
                    + G ID +   Q   F+ ++K+++      ++             +  Q  I
Sbjct: 1060 HFETASGMLKGFIDLVFCWQGRYFVLDWKSNYLGGSPADYTEEALCQAMIEHRYDFQYQI 1119

Query: 907  YEKILKDSYPNK 918
            Y   L      +
Sbjct: 1120 YSLALHRFLRQR 1131


>gi|289705452|ref|ZP_06501846.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
 gi|289557837|gb|EFD51134.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
          Length = 963

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 107/637 (16%), Positives = 197/637 (30%), Gaps = 90/637 (14%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS-FFLTQK 77
              P     ++  NK  +   E     I   AQ +  ++            ++   L   
Sbjct: 107 RARPHEILAITFTNKAAAEMRERVAGLIGPTAQRMWISTFHSSAVRLLRNEAANIGLKST 166

Query: 78  FTPQKN------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA----SL 127
           FT   +      + T     +    +   K   +    +++       + +T+A      
Sbjct: 167 FTIYDSADSLRLVTTVAKQHELDPKRFAPKALLNRISSLKNELVEADDYAATVAEGDPWG 226

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y    ++   LDF+DLI  T  +    +    +     +   H+L+DE QD
Sbjct: 227 RAVAAVYRGYTARLRQANALDFDDLIGMTVHMF---EAFPRVLDNYRRRFRHVLVDEYQD 283

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +IR L       +   +    L  VGD  QSIY+F GA+ + ++  ++     
Sbjct: 284 TNHAQYRLIRLLAGPAGDPEGVETPGGELTVVGDSDQSIYAFRGADIRNIVEFEQDF--- 340

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I+L  ++RST  IL   + V     + +                      
Sbjct: 341 -----TDAVTIKLEQNYRSTQTILDAANAVIERNPDRRPKR------------------- 376

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW            P    + +  +S   E         IA TI  +   D       
Sbjct: 377 --LW------TAEGEGPAIVGYAAENESAEAE--------WIASTIDRLQDED------- 413

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I+  D+ V  R    +  +            I           D   IKD +A  R 
Sbjct: 414 --GIRPADVAVFYRTNAQSRALEERL----VTRGIPYRVIGGTRFYDRKEIKDALAYLRV 467

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISK 480
           I++ +DD++   +L  P     +     +        + +    +        A   +  
Sbjct: 468 IVNPDDDVNVRRILNEPKRGIGDRAEGAVAAWAERNRSTFSAALRDAENAPGMAARSLKA 527

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
            +  ++ + +L  +A+   P      +L               +     D L E +    
Sbjct: 528 VRGFVQMMDDLGQVAESAGPATVLEAVLEQSGMLAALRESEDLQDESRADNLGELVAVVR 587

Query: 538 RNEQNSYSS-LQELISELEQYPPTIKRA---------HSANHNEVRIMTVHTAKGLESPV 587
             E       L + + ++       +            +    +V +MT+HTAKGLE PV
Sbjct: 588 SFETTHPDGTLSDFLEQVALVADADQLPTAPDVEGEALAEQQGQVTLMTLHTAKGLEFPV 647

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
           VFL      VF H          +     G+     +
Sbjct: 648 VFLTGMEHGVFPHARSMTDEKELAEERRRGLRGPDAR 684


>gi|238798592|ref|ZP_04642068.1| DNA helicase II [Yersinia mollaretii ATCC 43969]
 gi|238717548|gb|EEQ09388.1| DNA helicase II [Yersinia mollaretii ATCC 43969]
          Length = 721

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 103/552 (18%), Positives = 186/552 (33%), Gaps = 116/552 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R            
Sbjct: 229 QYAWIRLLAGD----------RANVMIVGDDDQSIYGWRGAQVENIQRFLNDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST++ILT  + + +  +   G +                     LW
Sbjct: 273 --GAETIRLEQNYRSTSNILTAANALIAHNDGRMGKN---------------------LW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S    F+ L +       AR +   I                  
Sbjct: 310 -------TEGAEGEPISIYCAFNELDE-------ARFVVNRIRAWQDNGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R + ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGGQRFFERQEIKDALAYLRLVSNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++  +             S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQSTRALLQEKVLAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
           ++ +  L H       H     ++        +    G +    ++ L+E +N T +   
Sbjct: 462 VELVDSLAHETADMPLHVQTDRVIRDSGLWSMYEQEKGEKGQARVENLEELVNATRQYSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +    A  + V++MT+H+AKGLE P VF+V     +F 
Sbjct: 522 QDEDQDLMPLQAFLSHAALEAGEGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGVTRAM 607

Query: 660 DQLIICKHSNTS 671
            +L +C   +  
Sbjct: 608 QKLTLCYAESRR 619


>gi|330816643|ref|YP_004360348.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3]
 gi|327369036|gb|AEA60392.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3]
          Length = 789

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 113/707 (15%), Positives = 208/707 (29%), Gaps = 155/707 (21%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K  Q      +++        +T     +   L   Y++  ++  V+DF +L++   +LL
Sbjct: 138 KNVQYFINNAKEQGLRPDKVDATDNFNRMFVELYQAYDQQCQREGVVDFPELLLRCYELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
               ++A +R        HIL+DE QDT+ +Q+  ++ L                +FAVG
Sbjct: 198 S---LNAPLRAHYQARFRHILVDEFQDTNKLQYAWLKLLAG----------GQNAIFAVG 244

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   +   + R        ++I+L  ++RS  +IL   + + S 
Sbjct: 245 DDDQSIYAFRGANVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANHLISH 296

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             +  G +  +           G    V+++E      +                     
Sbjct: 297 NSHRLGKNLRTD---------AGHGEPVRVYEAATDSQE--------------------- 326

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   I ++I             +   ++ VL R    +  I           
Sbjct: 327 -----AGWIVEEIRSLINGG----------MARSEVAVLYRSNAQSRAIEHTL----MTA 367

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQ 459
            I+          +   IK  +A  R I +  DD +F  ++  P        I ++    
Sbjct: 368 GIAYRVYGGLRFFERQEIKHALAYLRLIDNPSDDTAFARVVNFPTRGIGARSIEQLADAA 427

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518
           R     +   I        +        I ++       S  +    ++ A      +  
Sbjct: 428 RLYNCAMAAAIPYVTGKAGTSLGTFANLIAKMRAETAQMSLPETVEYVVRASGLADFYQG 487

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE----------------------------- 549
            R G + ++ L E +N            L                               
Sbjct: 488 EREGQDRLENLQELVNAATAFVSEEGYGLDTPARSIPLRPGAIAAPEITLDGGGDEVLAP 547

Query: 550 ---------------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                          L   L             A  + V++MTVH AKGLE   VF+   
Sbjct: 548 AELGDPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFAAVFITGL 607

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F H++                                    L+    EE  RL+YV
Sbjct: 608 EEGLFPHENS----------------------------------ALESDGLEEERRLMYV 633

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +TRA ++L +      +  +  + +T Y++    F    +     LT  +         
Sbjct: 634 AITRAKERLYLS----FAQSRMLHGQTRYNIRSRFFDELPQQVLKWLTPQVEAGSRWGGR 689

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                       R          + +     S            + S
Sbjct: 690 ADNAGWGRNWFSRPGGGNGGGSRESVVDAAVSAPLPAFANAQRASGS 736


>gi|326797393|ref|YP_004315213.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1]
 gi|326548157|gb|ADZ93377.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1]
          Length = 736

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 118/731 (16%), Positives = 236/731 (32%), Gaps = 147/731 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +  +++S  +             +  + + L            
Sbjct: 30  GAGSGKTRVLVHRIAWLMHAYELSPYSLMAVTFTNKAAREMQGRIEQLVGLPPQGMWVGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + +     + +     D  ++L+  +    +              
Sbjct: 90  FHGLAHRLL------RAHWRDAGLKENFQIMDSDDQLRLVKRIMREFNIDDTRWPPKQVA 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +  S        + L  HYEEA ++N +LDF +L++  ++L+   
Sbjct: 144 WFINGQKDEGRRAAHVPDSHDPFSKGMRELYYHYEEACERNGLLDFGELLLRAHELMLTN 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                +     Q   H+L+DE QDT+ IQ+  +R +  D            T+ AVGD+ 
Sbjct: 204 PA---LLKHYQQRFVHVLVDEFQDTNTIQYAWLRVMVGD----------TGTITAVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + +    +             + I L  ++RST  IL   + +    ++
Sbjct: 251 QSIYGWRGAKIENIQNFSKHF--------NDVATIRLEQNYRSTGQILKAANGLIQNNDD 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G                      +LW           +    S  + F+   +     
Sbjct: 303 RLGK---------------------ELW-------TDSGDGDPISLYAGFNEQDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR I   I       T            KD+ +L R    + +I           ++ 
Sbjct: 330 --ARFILEIIKKWRDDGTAL----------KDMAILYRSNAQSRVIEECL----VREQLP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     D L IK+ +A  R  +   DD +   ++  P     E  I  +    R +
Sbjct: 374 YRIYGGHRFYDRLEIKNALAYARLAVDPNDDGAMERVINVPPRGIGERSIGTLREIARDQ 433

Query: 463 TETVYEYIQKFANC------GISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKK-- 512
             ++++  +             +  ++ ++ I  + +  I       D F  I+      
Sbjct: 434 GCSMWQAAEHIVQHGVMPARASNAIKNFLQIIDGMGNTLIQPDLGLGDVFEHIIQEAGLI 493

Query: 513 -GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE--LISELEQYPPTI-KRAHSAN 568
              ++     G   I+ L E ++       +         +++ L+Q      +      
Sbjct: 494 PHHEKEKGEKGEARIENLKELVSAASGFSWSEDDEEFSSPMMAFLDQAVLDAGEAQADEY 553

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V++MT+H+AKGLE P+VFL      +F  K   +                       
Sbjct: 554 QDSVQLMTLHSAKGLEFPLVFLTGVEENLFPSKMSFEEPG-------------------- 593

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                           EE  RL YVG+TRA ++L I    +       +  +    + + 
Sbjct: 594 --------------RLEEERRLCYVGITRAMEKLYITYAESRRLHGSESFNSPSRFIREI 639

Query: 689 FHNDERVKKIK 699
                   +++
Sbjct: 640 PQECIEEVRLR 650


>gi|109900377|ref|YP_663632.1| DNA helicase II [Pseudoalteromonas atlantica T6c]
 gi|109702658|gb|ABG42578.1| DNA helicase II [Pseudoalteromonas atlantica T6c]
          Length = 724

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 100/741 (13%), Positives = 231/741 (31%), Gaps = 132/741 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    ++                +  + + LQ ++ +      
Sbjct: 30  GAGSGKTRVLVHRIAWLMEVEGIAPWGILAVTFTNKAAREMRGRIEELQGSALSNMWIGT 89

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  ++   L     +    +N    + + +   ++  +K    +  +   +   + +  +
Sbjct: 90  FHGIAHRLLRTHYAEAKLPENFQILDSDDQYRLVRRVIKSMNLDEKQWAPKHVQWYINGN 149

Query: 123 TLASLTL-------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
               L                  +   Y++  ++  ++DF +L++  + L  +      +
Sbjct: 150 KDEGLRPEHIDTHGDYNQKKLCEIYQVYQQTCERAGLVDFAELLLRAHQLWVENPE---L 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                     +L+DE QDT+ IQ+  +R L                +  VGD+ QSIY +
Sbjct: 207 LKHYQTRFRAVLVDEFQDTNNIQYAWLRLLAA----------PTNNMIIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + +    R   +           I L  ++RST +IL   + V    +   G   
Sbjct: 257 RGANVQNIQHFLRDYPQ--------AKTIRLEQNYRSTGNILKAANAVIDNNQGRLGK-- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW           + +  S  + F+ L +       AR  
Sbjct: 307 -------------------ELW-------TDGVDGEPISLYAGFNELDE-------ARFA 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I +                   D  +L R    + ++            ++      
Sbjct: 334 VSRIKDWQTQGYAL----------SDCAILYRNNAQSRVLEEAL----LQESVAYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   I+D +   R I  Q DD +F  ++ +P     +  + ++    +    ++++
Sbjct: 380 LRFFERQEIRDALGYLRIINQQIDDAAFERVVNTPTRGIGDKTLSQVREQAKEHDLSMWQ 439

Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                   ++ +    +  Q  +  + +L               ++        + +  G
Sbjct: 440 ASLQLLREKRLSGRAANALQAFVDLVLKLQKDTTDLPLEQHADHVIKNSGLYAMYKAEKG 499

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTV 577
            +     + L+E +    +        ++  + + L              + + V++MT+
Sbjct: 500 EKAQARIENLEELVTACKQFAPPEEAENMSPMSAFLAHASLEAGDAQADKHQDAVQMMTI 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           HTAKGLE P+V LV     +F  +                                    
Sbjct: 560 HTAKGLEFPMVLLVGVEEGMFPSQMSNDEPG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVGMTRA  +L +    +     +    T    + +         +
Sbjct: 591 -----KIEEERRLCYVGMTRAMQKLYLTYAESRRVYGQDKYHTPSRFIKEIPTEFIEEVR 645

Query: 698 IKLTNSINKDEWIAYEWSTHH 718
           ++   ++++     ++ S  H
Sbjct: 646 LRTKATVSRPMQSRFQSSASH 666


>gi|167550134|ref|ZP_02343891.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA29]
 gi|205324737|gb|EDZ12576.1| exodeoxyribonuclease V, beta subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA29]
          Length = 1181

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 123/876 (14%), Positives = 272/876 (31%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEALAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
                                + +  Q  +Y   L  
Sbjct: 1085 WLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|154707778|ref|YP_001424668.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|154357064|gb|ABS78526.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 1110

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 148/910 (16%), Positives = 304/910 (33%), Gaps = 138/910 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRD 112
               + +  +++ FLT++   +K +          ++  ++  DL  +L K+ ++     +
Sbjct: 274  DEADLWRGIATLFLTKEGLWRKKLDKNDGFPVEDKKHKQRMKDLLSQLNKN-EKLRLALN 332

Query: 113  RFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                      T          +++   L A      ++   +DF ++ +     L   + 
Sbjct: 333  EVKNCPPIAYTEKQWNIIHGLVSILPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQ 392

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             +    ++D++I H+LIDE QDTS+IQ+ +I  L   +          RTLF VGD  QS
Sbjct: 393  PSDYALQLDEQIQHLLIDEFQDTSIIQFHLIEKLITGWQPKDG-----RTLFLVGDPMQS 447

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  AE    L+ K            + + + L  +FRS  +++   ++ F      +
Sbjct: 448  IYRFRQAEVGLFLQVKNE-----GLGEIQLTPLTLRNNFRSQKNLIDWFNQTFEPTFPKE 502

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              S   + +  H                     ++  N +  ++ S  ++     +A   
Sbjct: 503  ENSHLGSISYSH-----------------SFATNNSINQKNINFYSLLNA-----NALNE 540

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +I   I      +             K I +LVR R     IT   R       I   
Sbjct: 541  ATQIVKIIQGCRSENPE-----------KTIAILVRSRSQLIEITPALRS----ADIPFH 585

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
              +   L   + I+DL++L R +    D ++++ +L++P    +  D+  +    ++   
Sbjct: 586  AVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYANDKPI 645

Query: 466  VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                          + G ++   +   +              +   I  A  G     + 
Sbjct: 646  WVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGGPACLSNS 705

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                      + L         +  +L+ L  +L Q    I        N ++IMT+H A
Sbjct: 706  TELMNTQAYFQLLETL-----ENDFTLERLTQKLNQLYAQIDTDA---KNPIQIMTIHKA 757

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLIK 637
            KGLE   V L     +  S  H   + +           I  P    S+  + + + L +
Sbjct: 758  KGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKR 817

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDE 693
              K+ T  E  RLLYV  TRA +   +    N  +     K   + ++ ++++       
Sbjct: 818  IEKEKTTNEITRLLYVAATRAKESFHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQEAF 877

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                I   +++   +                   + +++L  +   P  L +    +   
Sbjct: 878  EQSIIIFDDTLPSQKGG----------------LKLLRRLTSDWAPPFILKTLPSAESKP 921

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----Y 808
                 P++                     G++IH+ L+ I                   +
Sbjct: 922  LTPFTPASSK-----------------RLGIVIHETLERIANEGLESWDKERIENNKSFW 964

Query: 809  CTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKD 861
              +  +L  + E        ++ ++++ L +      +S      SE  ++      +  
Sbjct: 965  QRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPIT----LVEDK 1020

Query: 862  IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKILKDSYP 916
             I    ID   I +    +I +YK+     + ++         H AQL  Y         
Sbjct: 1021 KIKHFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEAQLQQYANAFHALDS 1080

Query: 917  NKSLVCLLIY 926
             + +   L +
Sbjct: 1081 -RPIKLGLYF 1089


>gi|85060320|ref|YP_456022.1| DNA-dependent helicase II [Sodalis glossinidius str. 'morsitans']
 gi|84780840|dbj|BAE75617.1| DNA helicase II [Sodalis glossinidius str. 'morsitans']
          Length = 720

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 117/722 (16%), Positives = 222/722 (30%), Gaps = 132/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENCSPYSVMAVTFTNKAAAEMRHRIEHLVGTSQGGMWIGT 89

Query: 66  FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L    Q     ++    +   +   LK  ++    +  +   R         
Sbjct: 90  FHGLAHRLLRAHHQDANLPQDFQILDSEDQLRLLKRLIRAMNLDEKQWPPRQAMWYIGGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +           + +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 150 KDDGLRPQHVESYGNPVEATWQRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---I 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   +IL+DE QDT+ IQ+  IR L  D             +  VGD+ QSIY +
Sbjct: 207 LRHYRERFTNILVDEFQDTNQIQYAWIRMLAGDD----------GNVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R                  I L  ++RST++IL   + + +      G + 
Sbjct: 257 RGAQVENIQRFLDDFP--------GAQTIRLEQNYRSTSNILQAANALIAHNGGRLGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  +    F+ L +       A  +
Sbjct: 308 --------------------LW-------TEGAEGEPITLYCAFNELDE-------ALFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                    KD  +L R    + ++            +       
Sbjct: 334 VNRIKVSQEQGGAL----------KDCAILYRSNAQSRVLEEAL----LQTGLPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD +A  R I ++ DD ++  ++ +P     +  +  +    R    T+++
Sbjct: 380 MRFFERQEIKDALAYLRLIANRNDDAAYERVVNTPPRGLGDRTLDVVRQTARDRQLTLWQ 439

Query: 469 ------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                   +  A    +  Q  ++ I  L         H     ++        +    G
Sbjct: 440 SSRALLAERVLAGRAAAALQRFLELIDALAEETAELPLHVQTDRVIKNSGLWSMYEQEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    I+ L+E +  T +    +    L  L + L        +    +  + V++MT+
Sbjct: 500 EKGQARIENLEELVTATRQFSYNDEDQDLLPLQAFLSHAALEAGEGQADSYQDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA D+L I          K         V +         +
Sbjct: 591 -----RLEEERRLAYVGVTRAMDKLTITYAETRRLYGKEAYHRPSRFVGELPPACVEEVR 645

Query: 698 IK 699
           ++
Sbjct: 646 LR 647


>gi|254672332|emb|CBA05496.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha275]
          Length = 671

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 113/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGDPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         ++      G      + + +++  R       ++ EL   +       
Sbjct: 478 NLLKEIDYENHLLASEESKAGEIKWRNVGDLVSWFARKGGEDGKNVIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|227485018|ref|ZP_03915334.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237015|gb|EEI87030.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC
           51172]
          Length = 731

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/552 (18%), Positives = 185/552 (33%), Gaps = 118/552 (21%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             LDF+DLI    +L  K    +        + ++I +DE QDT+  Q+E+IR +     
Sbjct: 182 NALDFDDLIEKVLELFVKD---SETLRYYQNKFDYIFVDEFQDTNNSQYELIRFIAG--- 235

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                    + + AVGD  QSIYSF GA+ + +L  ++  +           II+L  ++
Sbjct: 236 -------KKQNVVAVGDADQSIYSFRGADIRNILSFEKDFKN--------TKIIKLEQNY 280

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST+ IL   + + +     +                    G   L++            
Sbjct: 281 RSTSKILETANVLIANNLERKEK----------NLWTENGDGADVLYK------------ 318

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                        + S  S  ++ +  TI N++              +  D+ +L R   
Sbjct: 319 -------------ETSIESDESKFVIDTIKNLLADG----------YKESDMAILYRTNA 355

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            +               I+          D   IKDL+A    +++ +DD+S   ++  P
Sbjct: 356 QSRPFEEAL----LKNLIAYKVVGGLKFYDRKEIKDLIAYLNILVNSKDDVSLKRIINEP 411

Query: 445 LFNFSEDDIFKICT-QRHETETVYEYIQK--FANCGISKFQ----HVIKYIHELIHIAQF 497
                +  I +I         ++ + I    F+     + +       K + E+      
Sbjct: 412 KRGIGDKSIDQIEKIAISHGISMLDLITDDNFSILMTDRLKNLTDKFYKPLEEIFINVDK 471

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
               D    +L      +        E    +D ++EF++     ++ +     +L   L
Sbjct: 472 YKIVDLINEVLEKTGYLRSLEKSLLVEDRARVDNINEFISSAADYQEANPED--DLRDYL 529

Query: 555 EQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           E             N+  + +MT+H AKGLE PVVF+V     +F  K            
Sbjct: 530 ENLSLLSDIDKTEENNESISLMTMHQAKGLEFPVVFIVGLDEGLFPSKRSLD-------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                      +   EE  RL YVG+TRA ++L +       N 
Sbjct: 582 ---------------------------EGNLEEERRLFYVGITRAEEKLFLTSAQMRRNY 614

Query: 674 KKSNQRTWYDMV 685
            K         +
Sbjct: 615 GKVTYYKPSRFI 626


>gi|326576083|gb|EGE26002.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis O35E]
          Length = 689

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 104/601 (17%), Positives = 203/601 (33%), Gaps = 126/601 (20%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +   +  +K+   +++ I  +D   T    +           L   YE  
Sbjct: 139 RDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLDDPEDLGFVH-----LYELYERN 193

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI     +L++      ++ K    I ++L+DE QDT+  Q+E+I+ L 
Sbjct: 194 LRAYNAVDFDDLIAMPVRILRESHE---VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLV 250

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                             VGD+ QSIY++ GA+P+ +   K+              +++L
Sbjct: 251 GRL----------GRFTVVGDDDQSIYTWRGAKPENMALLKQDFPN--------LEVVKL 292

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  IL   + V +  E+    S                     LW         
Sbjct: 293 EQNYRSTNHILGAANAVIANNEHMFEKS---------------------LW-------SD 324

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           + + ++    +  +   +       A R+A  I          ++  +         VL 
Sbjct: 325 KGDGEKIRVITCNNDFDE-------AERVAKEI---------LTHRLRNNQTWDKYAVLY 368

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R       +    R L+    I    +          IKDLM   R I++ +DD +F+ +
Sbjct: 369 RSNFQARALEAQLRQLE----IPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRV 424

Query: 441 LKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI--SKFQHVIKYIHELI----- 492
           + +P        + K+         ++     +        +K   +I+   E I     
Sbjct: 425 INTPKRGIGSVTLEKLGLFAQHCGTSLLGACTRAGVKDALGAKAGAIIESFGEFINYYTH 484

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFL----NFTLRNEQNS 543
            +     P      ++              N       +D ++           R +   
Sbjct: 485 QLHDNSDPMPLVRQMITETGYIDYVKESSKNPQQEKGRLDNIEALYLSIAALINRADDEH 544

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             ++  +I ++       ++    N N+V +MT+H AKGLE   V+++    ++  H + 
Sbjct: 545 DKTIDAVIRKMVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDYVYIIGCEEKLLPHVNS 604

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                 +  EE  RL+YVG+TRA  +L 
Sbjct: 605 IMS-----------------------------------ANIEEERRLMYVGITRAKSELT 629

Query: 664 I 664
           +
Sbjct: 630 L 630


>gi|99081864|ref|YP_614018.1| ATP-dependent DNA helicase Rep [Ruegeria sp. TM1040]
 gi|99038144|gb|ABF64756.1| ATP-dependent DNA helicase, Rep family [Ruegeria sp. TM1040]
          Length = 814

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 116/683 (16%), Positives = 199/683 (29%), Gaps = 143/683 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                Y+   K+   +DF DL+++  ++ +       +  +  +   +IL+DE QDT++ 
Sbjct: 195 EFYDQYQTRLKELNAVDFGDLLLHCVEIFQNNPD---LLAQYHRWFRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L           S  + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLA----------SGHKNICCVGDDDQSIYGWRGAEVGNILRFEKDF------- 294

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL+    V    E   G                      +LW
Sbjct: 295 -SGAKVIRLEQNYRSTKHILSAASGVIRGNEGRLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++     ++D   +       AR I   I  M            R  
Sbjct: 333 -------TEAEGGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGMRQY 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              ++ +LVR                    +           + L I+D MA  R ++S 
Sbjct: 374 GLNEMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRVVISP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHV 484
           EDDL+F  ++ +P     +     I T  R    ++ E  +     G+ K       + +
Sbjct: 430 EDDLAFERIVNTPKRGLGDKAQQTIQTVARANGVSLLEGARLAVEDGLIKGKGGAALRRL 489

Query: 485 IKYIHELIHIAQ--------------------------FCSPHDFFTLILGAKKGRQQFI 518
           ++ I     + +                            S  +   +IL        + 
Sbjct: 490 VENIARWGQMTRTVLADPDDPDAVVEGVQSFEAFQARTEVSHVELAEIILDESGYTSMWQ 549

Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           +    +    ++ L E +      +         L   LE     +         +V IM
Sbjct: 550 ADKNPDSPGRLENLKELVKALENFDN--------LQGFLEHVSLVMDNDKQDAEQKVSIM 601

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE P VFL      +F  +                                  
Sbjct: 602 TLHAAKGLEFPAVFLPGWEDGLFPSQRS-------------------------------- 629

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +        EE  RL YVG+TRA     I    N         ++     +     +E V
Sbjct: 630 MDESGLKGLEEERRLAYVGITRAEKVCTISFAGN--RRVFGQWQSQLPSRFIDELPEEHV 687

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             +            A   ++   E       E      D    P       +       
Sbjct: 688 DVLTPPGLYGGGFGAAAPSASAVAEPAVRSTIEERMSNADGYNSPGWKRMQARTAERGYS 747

Query: 756 ILNPSTIDTKGKTNLESLLSDNQ 778
               S   T       S     +
Sbjct: 748 KPRKSEAQTIDLAATSSFTVGER 770


>gi|294503038|ref|YP_003567100.1| exodeoxyribonuclease V beta chain [Yersinia pestis Z176003]
 gi|262365316|gb|ACY61873.1| exodeoxyribonuclease V beta chain [Yersinia pestis D182038]
 gi|294353497|gb|ADE63838.1| exodeoxyribonuclease V beta chain [Yersinia pestis Z176003]
          Length = 1159

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 128/989 (12%), Positives = 295/989 (29%), Gaps = 164/989 (16%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
            +   +  L         +  +L   +G       ++ L    +   +             
Sbjct: 165  VVTQIDALKAEWRLAAPELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPK 224

Query: 76   QKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
            +    +++++   T++       L   +    ++ + +RD      + +   +       
Sbjct: 225  ELEKFRQSVLLEKTKKGAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSV------ 278

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                 ++ K++   L F+DL+   +  L++      +   I       +IDE QDT   Q
Sbjct: 279  -----QQEKRQRAELGFDDLLSKLDAALQQSG-GELLAQSIRTRYPVAMIDEFQDTDPQQ 332

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + +  ++                L  +GD KQ+IY+F GA+    +R +       T   
Sbjct: 333  YRIFHTVYGG--------QEACALLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT--- 381

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                   L  ++RS+  ++  V+++FS+         +    I   +++     + ++  
Sbjct: 382  -------LETNWRSSFPMVQSVNRLFSLVNTPFLF--EQIPFINVAAAKKNHDLSFEI-- 430

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGK 367
                    +  P    W    D +       ++AR+ A  I + +         + +   
Sbjct: 431  ------KGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELLTTKG 484

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             + +QA DI +LVR R +  LI      L      SV  ++R  + +    KDL+ L + 
Sbjct: 485  PKPVQASDITILVRSRAEAALIRDALSAL---AIPSVYLSNRDSVFETTEAKDLLWLLQA 541

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +L+ E + +    + + +       +  +       + + +    +        + V+  
Sbjct: 542  VLAPEQERALRSAMATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQR--RGVLPM 599

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            + E++              +L    G ++            L E L        + ++ +
Sbjct: 600  LREMMARRH------LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSEHALI 647

Query: 548  QELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            + L  ++ Q      + +    ++ + VR++T+H +KGLE P+V+L   G+       + 
Sbjct: 648  RWLAQQIAQPNPQSDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLY 707

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-- 662
                                     N   +     ++    E  RLLYV +TR+      
Sbjct: 708  HDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVALTRSVYHCSV 754

Query: 663  ----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW-----IAYE 713
                +I        E   ++     +V      D  V   KLT                 
Sbjct: 755  GIAPLIKGGRKKQGESDMHRSALGYLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEP 814

Query: 714  WSTHHPENTPLEREETIKQ--LMDEQKIPKKLFSPIKNDINEPYILNPSTID-------- 763
                  +  P    E   +      Q   +               L  S           
Sbjct: 815  PDDKPWQPQPEALPELTARHFTRKMQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGA 874

Query: 764  ------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
                                 + +  +  +  +    G  +H LL+ +      +     
Sbjct: 875  PLQVLLPRLDIDAVGEQAVVTEDDHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLS 934

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK 859
                    + +  +    L   +  +++ P+      +         +E+     I+   
Sbjct: 935  ERL---QQQGFSEQWAPVLHQWLNDIVQTPLTDTGATLAGLSPERKQAELQFYLPIDSLL 991

Query: 860  K--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
            +                            ++ G ID +   Q   ++ +YK++       
Sbjct: 992  RAEVLDRLIKQYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSR 1051

Query: 894  EHIPY---------THIAQLSIYEKILKD 913
             +             +  Q  +Y   L  
Sbjct: 1052 AYTVEAMTQAMAEHRYDLQYQLYTLALHR 1080


>gi|291284146|ref|YP_003500964.1| Exodeoxyribonuclease V, beta subunit [Escherichia coli O55:H7 str.
            CB9615]
 gi|209761124|gb|ACI78874.1| DNA helicase RecB [Escherichia coli]
 gi|290764019|gb|ADD57980.1| Exodeoxyribonuclease V, beta subunit [Escherichia coli O55:H7 str.
            CB9615]
 gi|320656509|gb|EFX24405.1| exonuclease V subunit beta [Escherichia coli O55:H7 str. 3256-97 TW
            07815]
          Length = 1180

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVSAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|227325792|ref|ZP_03829816.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 720

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 117/722 (16%), Positives = 221/722 (30%), Gaps = 132/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  +   L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIDHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    + + +   LK  ++    +  +   R         
Sbjct: 90  FHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLIRALNLDEKQWPPRQAMWFINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +           + +   Y+EA  +  ++DF +L++  ++L   +     +
Sbjct: 150 KDEGLRPQHIESYGNPIEQTWQRVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---V 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   +IL+DE QDT+ IQ+  IR L  D             +  VGD+ QSIY +
Sbjct: 207 LNHYRERFTNILVDEFQDTNRIQYAWIRILAGD----------SAKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +    +               I L  ++RST++IL   + + +      G + 
Sbjct: 257 RGAQVENIQLFLKDF--------AGAETIRLEQNYRSTSNILKAANALIAHNGGRLGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +       AR +
Sbjct: 308 --------------------LW-------TDGAEGEPISLYCAFNELDE-------ARYV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     D  +L R    + ++            +       
Sbjct: 334 VNRIKAWQENGGAL----------SDNAILYRSNAQSRVLEEAL----LQQSMPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD +A  R I ++ DD +F  ++ +P     +  +  +    R    T+++
Sbjct: 380 MRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +             +  Q  I+ I  L +       H      +        +    G
Sbjct: 440 STRALLQEKVLAGRAAASLQRFIELIDALAYETSELPLHIQTDRAIKDSGLWSMYEQEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    ++ L+E +  T +   Q     L  L + L        +    AN + V++MT+
Sbjct: 500 EKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAALEAGEGQADANQDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA  +L I    +     K         V +         +
Sbjct: 591 -----RLEEERRLAYVGVTRAMQKLTITYAESRRLYGKEAYHRPSRFVGELPEECVEEVR 645

Query: 698 IK 699
           ++
Sbjct: 646 LR 647


>gi|114769364|ref|ZP_01446990.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255]
 gi|114550281|gb|EAU53162.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255]
          Length = 800

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 107/657 (16%), Positives = 203/657 (30%), Gaps = 140/657 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                Y+   K     DF DL+++  ++ +     A I  K      +IL+DE QDT++ 
Sbjct: 197 EFYTQYQSRLKALNAADFGDLLLHVVNIFQNN---ADILEKYQNGFKYILVDEYQDTNVA 253

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              R +  VGD+ QSIY + GAE   +LR +R  +      
Sbjct: 254 QYMWLRLLAA----------KHRNICCVGDDDQSIYGWRGAEVGNILRFERDFE------ 297

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST DIL     + +  ++  G +                     LW
Sbjct: 298 --GAKVVRLEQNYRSTPDILAAASGIIAGNKDRLGKT---------------------LW 334

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   ++ + ++     ++D   +       AR +   + +                
Sbjct: 335 -------TARKDGEKVRLIGHWDGEEE-------ARWVGEDLESYQRG-----TRGLPAF 375

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               + +LVR                    +           + + I+D MA  R  +S 
Sbjct: 376 GLDSMAILVRASHQMRSFEDRF----LSIGLPYRVIGGPRFYERMEIRDAMAYFRVAVSP 431

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ----------------KFA 474
           +D L+F  ++ +P     E     I  T R    ++ E  +                +  
Sbjct: 432 DDGLAFERIVNTPKRGIGEKAQQLINTTARDHGVSMLEGARILLNEGGLSSKASNSLRKL 491

Query: 475 NCGISKFQHVI-----------KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
             G  +++++I           + +  L + +   S  +    IL        + +    
Sbjct: 492 IDGFDRWKNLISNSNLANNTRSEILETLDNFSDKTSHVEIAQTILEESGYTDFWQNDKTP 551

Query: 524 EVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
           E     + L E +      E         +   LE     ++   S +  +V IMT+H A
Sbjct: 552 EAAGRLENLKELVKALEGFEN--------IQGFLEHVSLIMENDVSDSTEKVSIMTLHGA 603

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE P+VFL      +F  +                                  +    
Sbjct: 604 KGLEFPIVFLPGWEDGLFPSQRS--------------------------------MDESG 631

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           +   EE  RL YVG+TR+     I   +N    ++   +    M               L
Sbjct: 632 QKGLEEERRLAYVGITRSEAVCTISFAAN----RRVYGQWQSSMPSRFIDELPADNIEVL 687

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
           T         + +      +      +         +++  +      +    P  +
Sbjct: 688 TPPGLYGGNSSRQDIEFESDLPERAAKADAYNSPGWKRMQIRTSQRFLDSSETPQAV 744


>gi|165924171|ref|ZP_02220003.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334]
 gi|165916386|gb|EDR34990.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334]
          Length = 1110

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 148/910 (16%), Positives = 305/910 (33%), Gaps = 138/910 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRD 112
               + +  +++ FLT++   +K +          ++  ++  DL  +L K+ ++     +
Sbjct: 274  DEADLWRGIATLFLTKEGLWRKKLDKNDGFPVEDKKHKQRMKDLLSQLNKN-EKLRLALN 332

Query: 113  RFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                      T          +++   L A      ++   +DF ++ +     L   + 
Sbjct: 333  EVKNCPPIAYTEKQWNIIHGLVSILPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQ 392

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             +    ++D++I H+LIDE QDTS+IQ+ +I  L   +          RTLF VGD  QS
Sbjct: 393  PSDYALQLDEQIQHLLIDEFQDTSIIQFHLIEKLITGWQPKDG-----RTLFLVGDPMQS 447

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  AE +  L+ K            + + + L  +FRS  +++   ++ F      +
Sbjct: 448  IYRFRQAEVRLFLQVKNE-----GLGEIQLTPLILRNNFRSQKNLIDWFNQTFEPTFPKE 502

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              S   + +  H                     ++  N +  ++ S  ++     +A   
Sbjct: 503  ENSHLGSISYSH-----------------SFATNNSINQKNINFYSLLNA-----NALNE 540

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +I   I      +             K I +LVR R     IT   R       I   
Sbjct: 541  ATQIVKIIQGCRSENPE-----------KTIAILVRSRSQLIEITPALRS----ADIPFH 585

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
              +   L   + I+DL++L R +    D ++++ +L++P    +  D+  +    ++   
Sbjct: 586  AVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYANDKPI 645

Query: 466  VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                          + G ++   +   +              +   I  A  G     + 
Sbjct: 646  WVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGGPACLSNS 705

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                      + L         +  +L+ L  +L Q    I        N ++IMT+H A
Sbjct: 706  TELMNTQAYFQLLETL-----ENDFTLERLTQKLNQLYAQIDTDA---KNPIQIMTIHKA 757

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLIK 637
            KGLE   V L     +  S  H   + +           I  P    S+  + + + L +
Sbjct: 758  KGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLKR 817

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDE 693
              K+ T  E  RLLYV  TRA +   +    N  +     K   + ++ ++++       
Sbjct: 818  IEKEKTTNEITRLLYVAATRAKESFHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQEAF 877

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                I   +++   +                   + +++L  +   P  L +    +   
Sbjct: 878  EQSIIIFDDTLPSQKGG----------------LKLLRRLTSDWAPPFILKTLPSAESKP 921

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----Y 808
                 P++                     G++IH+ L+ I                   +
Sbjct: 922  LTPFTPASSK-----------------RLGIVIHETLERIANEGLESWDKERIENNKSFW 964

Query: 809  CTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKD 861
              +  +L  + E        ++ ++++ L +      +S      SE  ++      +  
Sbjct: 965  QRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPIT----LVEDK 1020

Query: 862  IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKILKDSYP 916
             I    ID   I +    +I +YK+     + ++         H AQL  Y         
Sbjct: 1021 KIKHFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEAQLQQYANAFHALDS 1080

Query: 917  NKSLVCLLIY 926
             + +   L +
Sbjct: 1081 -RPIKLGLYF 1089


>gi|162448187|ref|YP_001621319.1| DNA helicase II [Acholeplasma laidlawii PG-8A]
 gi|161986294|gb|ABX81943.1| DNA helicase II [Acholeplasma laidlawii PG-8A]
          Length = 703

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 101/543 (18%), Positives = 174/543 (32%), Gaps = 110/543 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y      N +LDF+DL I T  L  +      I      + N IL+DE QDT  +Q
Sbjct: 167 VLEKYTHELITNNLLDFDDLQILTYKLFDEH---QHILEYYQNKFNFILVDEFQDTDHLQ 223

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++++ L              + LF VGD  QSIY+F GA            +       
Sbjct: 224 YKMMKLLAG----------KQKNLFVVGDPDQSIYAFRGANYDNAKFFLNDFKNE----D 269

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + I L L++RST +IL   +K+ +  +N                             
Sbjct: 270 GSKAEIVLDLNYRSTKEILKFANKLITSNKNRP--------------------------F 303

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
               + D     +   W++  D           A+ IA  I  +I              +
Sbjct: 304 SKSLETDLGNGLKPFIWSAQSD--------LNEAQMIANEIETLIKDG---------GYK 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             DI +L R    +     +       Y I  V            IKD++A  R ++   
Sbjct: 347 YSDIAILYRNNALSRSFEDVF----MKYNIPYVLYGGISFYQRKEIKDILAYIRLVVDPN 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ--KFANCGISKFQHVIKYIH 489
            D   + ++ +P        + K+    +    ++++ I     +             I 
Sbjct: 403 LDFYLMRIINTPRRAIGPTTLNKLQSYAKEHNMSMFDAIDSFDISGKTKQSLLEFKTLIL 462

Query: 490 EL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEFLN---FTLRNEQN 542
           E+      F         +       Q   +       E I+ + E  N         + 
Sbjct: 463 EMKFDFQNFTELGKVVDYVAYKTGYNQMLETDKDEYSEERIEYIKELKNPFVQAEAYYEG 522

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           ++  L++L+  L+Q         +   + V + T H  KGLE  VVF+     Q+F    
Sbjct: 523 TF--LEKLMQLLDQIALYSDLDRNKVSDAVVLSTFHQVKGLEFKVVFMTVMEEQIFPSSQ 580

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                               +  +  EE  R+ YVG+TRA ++L
Sbjct: 581 SF----------------------------------MDLNELEEERRIAYVGVTRAKERL 606

Query: 663 IIC 665
            + 
Sbjct: 607 YLT 609


>gi|166710261|ref|ZP_02241468.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 728

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 98/575 (17%), Positives = 190/575 (33%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 154 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +      G      
Sbjct: 261 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPERIGK----- 307

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR +   
Sbjct: 308 ----------------QLW-------TDSGDGGPIDLYAAYNEVDE-------ARYVVER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 338 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISAQLPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 384 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 443

Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  + +L          +    +L     R+ +        
Sbjct: 444 LCTQQNTLAARARNALATFLSLVGQLHAETGEMELAERIDHLLMRSGLREHWAKESRGGL 503

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    V++MT
Sbjct: 504 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 563

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 564 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 589

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 590 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 624


>gi|294782871|ref|ZP_06748197.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA]
 gi|294481512|gb|EFG29287.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA]
          Length = 737

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/545 (19%), Positives = 182/545 (33%), Gaps = 117/545 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y     ++  +DF D+++NT  LL+       I  KI ++  +I+IDE QDT+ +
Sbjct: 169 EVYEKYNRNLIESNAMDFSDILLNTYKLLQNSS----ILEKIQKKYKYIMIDEYQDTNNL 224

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +   +      
Sbjct: 225 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYKN----- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST+ IL   +++    ++++                        LW
Sbjct: 270 ---AKIIKLEENYRSTSTILDAANELIKNNKSSKDKK---------------------LW 305

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                 ++  + S       +I   I                 I
Sbjct: 306 -------TQNGKGDLIKVLVCDNARDEVS-------KIIDIIKENHQNG----------I 341

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             KD+ +L R    + +           Y I               IKD++A    I++ 
Sbjct: 342 PYKDMTILYRTNMQSRVFEEGL----LRYNIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 397

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
           +D+L+   ++  P     E  I KI    R     + + +            G  K   +
Sbjct: 398 QDELNLQRIVNVPKRKVGEKGIEKIIAFARENNLNLLDALSHIKDISGLTATGKEKLSEM 457

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQN 542
              I EL  ++   +       +L   K            +  I+ ++EF N  L  E  
Sbjct: 458 YDIIKELKDLSYSETASYIVETLLDKIKYIDYVKETYDDADARIENIEEFKNSILELE-- 515

Query: 543 SYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +   +  L   LE               + +++MT+H +KGLE P+VFLV   +++F   
Sbjct: 516 NVVGVLRLSEYLENVSLVSATDDLEDEKDYIKLMTIHNSKGLEFPIVFLVGFENEIFPG- 574

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +   EE  RL YV +TRA  +
Sbjct: 575 ---------------------------------ARASFDEKEMEEERRLCYVALTRAEKK 601

Query: 662 LIICK 666
           L +  
Sbjct: 602 LYLSH 606


>gi|293393896|ref|ZP_06638203.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582]
 gi|291423723|gb|EFE96945.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582]
          Length = 723

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 103/580 (17%), Positives = 190/580 (32%), Gaps = 116/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 175 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNRI 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 232 QYAWIRLLAGD----------RANVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 275

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + L  ++RST++IL   + + +  +   G +                     LW
Sbjct: 276 --GAETVRLEQNYRSTSNILKAANTLIANNDGRMGKN---------------------LW 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S    F+ L +       AR +   I +                
Sbjct: 313 -------TDGAEGEPISLYCAFNELDE-------ARFVVNRIKSWQDNGGAL-------- 350

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R I ++
Sbjct: 351 --NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGGMRFFERQEIKDALAYLRLIANR 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++  +        A    S  Q  
Sbjct: 405 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQMTLWQATRALLQDKVLAGRAASALQRF 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKG---RQQFISRFGNEVIDVLDEFLNFTLRNE- 540
            + +  L H       H     ++         +Q     G   I+ L+E +  T +   
Sbjct: 465 SELVDALAHETADMPLHVQTDRVIRDSGLFIMYEQEKGEKGQARIENLEELVTATRQFSY 524

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +    A  + V++MT+H+AKGLE   VF+V     +F 
Sbjct: 525 QDEDQDLMPLQAFLSHAALETGEGQADAYQDAVQLMTLHSAKGLEFKQVFIVGVEEGMFP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 585 SQMSLDEGG----------------------------------RLEEERRLAYVGLTRAM 610

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           ++L +          K         + +         +++
Sbjct: 611 EKLTLTYAETRRLYGKEVYHRPSRFIGEIPEECIEEVRLR 650


>gi|307944882|ref|ZP_07660219.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4]
 gi|307771806|gb|EFO31030.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4]
          Length = 801

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 109/665 (16%), Positives = 204/665 (30%), Gaps = 115/665 (17%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E        DF DL+++   L K +     +     +   ++L+DE QDT++
Sbjct: 208 RKLYEEYQERLSILNAADFGDLLLHVITLFKTQPD---VLANYQRRFRYMLVDEYQDTNI 264

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +              +  VGD+ QSIY + GAE   +LR +         
Sbjct: 265 AQYLWLRLLAQ----------GNPNVCCVGDDDQSIYGWRGAEVDNILRFEHDF------ 308

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +  +++ L  ++RST+ IL     + +  E   G +  +                   
Sbjct: 309 --KGATVVRLERNYRSTSHILAAASHLIAHNEGRLGKTLFTDFH---------------- 350

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                     + +    S  S +DS  +       AR I   I  + G +   +      
Sbjct: 351 ----------EPDHDLVSVASVWDSEEE-------ARTIGDEIQALQGKEHSLNQ----- 388

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                I +LVR              L     ++          + + I+D +A  R ++ 
Sbjct: 389 -----IAILVRASFQMRSFEDRFVTL----GLNYRVIGGPRFYERMEIRDALAYFRCVVQ 439

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQH 483
              DL+F  ++ +P     +  +  +    R     + +   + +     K       ++
Sbjct: 440 PAYDLAFERIVNTPKRGLGDASLKLVHGLARANRIPLMQAADQLSQTEELKPKPRNTLKN 499

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           ++          +     +   +IL      + +      E    LD         E+  
Sbjct: 500 LLVDFERWRGQLETMKHTELAEIILDESCYTEMWRKDRSAEAPGRLDNLKELIRSMEE-- 557

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               + +   LE     + R  +     V IMT+H+AKGLE   VFL      +F H+  
Sbjct: 558 ---FESMAGFLEHISLVMDRDGADEQEAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRS 614

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                ++  EE  RL YVG+TRA  +  
Sbjct: 615 LD--------------------------------ESGRAGLEEERRLAYVGITRARKRAK 642

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +   SN     +         + +       + +   +                      
Sbjct: 643 LYFASNRRIHGQWQNSIPSRFLDELPAEHVEIAEPSTSYGGYGGGGYGPSRFDRADSFER 702

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
                   Q     K             +      P TI+  G+   +S+  D   F+ G
Sbjct: 703 GSYSTPGWQRAQRAKTSSGNSYGQDLKSSRAKRQGPLTIE--GELVAKSVSDDPSAFSLG 760

Query: 784 -LIIH 787
             + H
Sbjct: 761 ERVFH 765


>gi|238918750|ref|YP_002932264.1| exonuclease V subunit beta [Edwardsiella ictaluri 93-146]
 gi|238868318|gb|ACR68029.1| exodeoxyribonuclease V, beta subunit, putative [Edwardsiella ictaluri
            93-146]
          Length = 1199

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 122/877 (13%), Positives = 259/877 (29%), Gaps = 122/877 (13%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +       +      +    L        +    +  K++   L F+DL+   +      
Sbjct: 317  RHSVFTEIESLLAEPLSLRDLVLARALGEIRDGVQLEKRRRAELGFDDLLTRLDQA-LGG 375

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
               A +   I Q     +IDE QDT  +Q+ + + +        +  SS   L  +GD K
Sbjct: 376  AGGAALAAAIRQRYPVAMIDEFQDTDPLQYRIFQRIY----TADDARSSETALLLIGDPK 431

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    LR +                  L  ++RS   ++  V+ +F   E 
Sbjct: 432  QAIYAFRGADIFTYLRARAAVDA----------CYTLETNWRSAPGVVQAVNALFLRLEA 481

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                +E     +   ++  G+  T+          D +       W         +    
Sbjct: 482  PFLFAEIPFLPVASAAANAGRRLTI----------DGEPQSAMALWLYDVPGCTAQEYLQ 531

Query: 344  ILARRIAYTISNMIGTDTIF--------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +AR  A  I + +                   R + A D+ +LVR R +  ++      
Sbjct: 532  TMARCCAAQIRDWLSAGQRGTARLTGGDDGKAGRALCAADMTILVRSRHEATVMRDALSA 591

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            L      SV  ++R  +      +DL+ L + IL+     +    L   L       +  
Sbjct: 592  LNIP---SVYLSNRDSVFSTPEARDLLWLLQAILTPAQSRTLRSALAVGLLGLDAAALDA 648

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            +       + V +    +        + V+  + ELI   +          +L    G +
Sbjct: 649  LSQDERRWDAVVDEFDGYRRQWQR--RGVLPMLRELIGRRR------LAENLLATAGGER 700

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEV 572
            +            L E L        +  + ++ L  +++       + +    ++ + V
Sbjct: 701  RLTDVL------HLGELLQEAAAQLDSEPALVRWLAQQIDSPQPQAESQQMRLESDRHLV 754

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +++T+H +KGLE P+VFL    +     + +    +      D                 
Sbjct: 755  QVITIHKSKGLEFPLVFLPFVATFRRQRQGLYHDRVTHQAVLDLCAD------------- 801

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQL------IICKHSNTSNEKKSNQRTWYDMVY 686
             D +    +    E  RLLYV +TRA          ++  +    +E   +      ++ 
Sbjct: 802  DDALALADQERLAEDLRLLYVAVTRAVYHCALGIAPLVSGNRRKQDESDLHHGAIGYLLQ 861

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAY--EWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
             +   D    K  L    N    +           +  P+       +    +       
Sbjct: 862  RAEACDAEGLKQALQTLSNDPIHLEILSPCEGTPWQAEPVPPRALCARRFTRRLQDDWRV 921

Query: 745  SPIKN----------DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
            +              ++     ++ +  +      + S  +  +    G  +H LL+ + 
Sbjct: 922  TSYSALQQHGGSTYLELLPRLDIDAAGENRTAAATIFSAHTFPRGAAPGTFLHDLLEKLD 981

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---MMTTAMSCDSYSEVSV 851
                            +   L         L  I +   +     ++         E+  
Sbjct: 982  FAAAPDPVWLAEQCLAQGIDLAWVPTLAQWLTQILQTPLDESGLTLSHLAPSQRQPELQF 1041

Query: 852  SGKINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKT 885
               I  P +                          + ++ G ID +   +   ++ +YK+
Sbjct: 1042 YLPIARPLRAEALDALIRRHDALSAQCEALAFSQVEGMLKGFIDLVFCHRGRYYLLDYKS 1101

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                  I + +  Q  +Y   L  
Sbjct: 1102 NWLGEDRAAYTPPAMAAAMIAHRYDLQYQLYTLALHR 1138


>gi|253687310|ref|YP_003016500.1| exodeoxyribonuclease V, beta subunit [Pectobacterium carotovorum
            subsp. carotovorum PC1]
 gi|251753888|gb|ACT11964.1| exodeoxyribonuclease V, beta subunit [Pectobacterium carotovorum
            subsp. carotovorum PC1]
          Length = 1194

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 129/873 (14%), Positives = 282/873 (32%), Gaps = 126/873 (14%)

Query: 106  EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
               +  DR     +    L  +     +     E K++   L F+DL+   +  L++   
Sbjct: 317  ALFEETDRLLATPLSLRDLVIVRALSAIRESVSEEKRQRAELGFDDLLSRLDVALQQPG- 375

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +   I +     +IDE QDT   Q+ + R+L                L  +GD KQ+
Sbjct: 376  GERLASAIRERYPVAMIDEFQDTDPQQYRIFRTLY--------VGQPQCGLLLIGDPKQA 427

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY+F GA+    +  +          G+  +   L  ++RS+  ++  V+++F   E   
Sbjct: 428  IYAFRGADIFTYMHAR----------GEVAAHYTLGTNWRSSHQMVHGVNRLFERLEYPF 477

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                     ++   S+ G          +V +   +  P  + W +  + +        +
Sbjct: 478  IFQNIPFLPVKPAESKRG----------LVFEVAGKPQPALQFWLTGSEPIGIGDYQQRM 527

Query: 346  ARRIAYTISNMIGTDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
            AR+ A  I + +            +  +R+++A D+ VLVR R++  LI      L    
Sbjct: 528  ARQCAAQIRDWLAASQRNEAWLVTDDSQRLVKASDMSVLVRSRREASLIRDALSRLSIP- 586

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
              SV  ++R  +       D++ L + +L+ E + +    + + L       +  +    
Sbjct: 587  --SVYLSNRDSVFSTPEASDMLWLLQAVLAPEQERTLRSAMATALMGLDAGQVDAL---- 640

Query: 461  HETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
             ++ET ++ +        + ++   ++  +  L+        H     +L + +G ++  
Sbjct: 641  GQSETAWDALVDEFAGYRALWRQKGILPMLRALMSR------HQLAENLLASAEGERRLT 694

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I +        +    ++ + V+I+
Sbjct: 695  DIL------HIGELLQDASATLDSEHALVRWLSQQIVQPNPQAENQQLRLESDRHLVQIV 748

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L          + I           D                  + 
Sbjct: 749  TIHKSKGLEYPLVWLPFISHFRVQDQGIYHDRESYQAVLDLQN-------------HEES 795

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD-----MVYDSFH 690
                ++    E  RLLYV +TR+     +       + KK      +      ++     
Sbjct: 796  QTLAEEERLAEDLRLLYVALTRSIYHCSVGVAPIQRSRKKDGSSDMHQSALGYLLQRGKE 855

Query: 691  NDERVKKIKLTNSINKDEWI-------AYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
             +      +L   +     +          W    PE   L      +QL D  ++    
Sbjct: 856  AEAATLVSELEGMVGDGVALTPLQATEEQRWQPDRPELAELRARHIERQLRDGWRVTSYS 915

Query: 744  F-----SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
                  S    D+     +       +G     +  +  +  + G  +H L + +     
Sbjct: 916  GLQQHGSAGAQDLVPRLDIEAIGERQEGDETQLTPHTFPRGASPGTFLHSLFETLDFTQP 975

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKI 855
                        +  +       K  + ++ +   N     ++   + D  +E+     I
Sbjct: 976  VDDGWLAEQLQLQGFEAHWQPVLKAWMNTLLQTPLNEQGITLSALDNADKQAELQFYIPI 1035

Query: 856  NCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHV 889
              P +                            ++ G ID +   +   ++ +YK++   
Sbjct: 1036 EAPIQAAQLDRLAKHHDPLSARCPALSFQQVKGMLKGFIDLVFRWEGRYYLLDYKSNWLG 1095

Query: 890  PQEIEHIP---------YTHIAQLSIYEKILKD 913
            P    +           + +  Q  +Y   L  
Sbjct: 1096 PDASAYTQTAMMQSMAEHRYDLQYQLYTLALHR 1128


>gi|300724824|ref|YP_003714149.1| exonuclease V subunit beta [Xenorhabdus nematophila ATCC 19061]
 gi|297631366|emb|CBJ92061.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Xenorhabdus nematophila
            ATCC 19061]
          Length = 1238

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 139/924 (15%), Positives = 273/924 (29%), Gaps = 154/924 (16%)

Query: 86   TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
            T++ N     L E +       + ++D      + +           +     + K    
Sbjct: 312  TKKGNAPQHSLFEAIDDLYQLPLTLKDIIVARAIIE-----------VRQSVHQEKLMRG 360

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
             + F+DL+   +  L+  +    +   I       +IDE QDT   Q+ + +++      
Sbjct: 361  HMGFDDLLTRLDSALQ-HEGGEQLAEAIRLRYPVAMIDEFQDTDPQQYRIFQAIYRCQPE 419

Query: 206  ------------GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
                             S    L  +GD KQ+IY+F GA+    +R +       T    
Sbjct: 420  DALPESQLPENRPAENQSLKNGLLFIGDPKQAIYAFRGADIFTYIRARSNVSAHYT---- 475

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RS+A ++  V+K+FS  E      +     ++            +  + 
Sbjct: 476  ------LETNWRSSAPMVYAVNKLFSCTERPFLFEQIPFIHVK----------AAEKNQG 519

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKK 368
            +      +       W    + + +      +AR  A  I + +         +    K 
Sbjct: 520  LKFSLHDEEQVALRFWLQPGEGVSKGEYEQSMARLCAAQIRDWLQAGQDGKALLHQAEKS 579

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R + A DI VLVR R++  LI      LK     SV  ++R  + D    KDL+ L + +
Sbjct: 580  RPVVAADITVLVRDRREASLIRNELNTLKIP---SVFLSNRESVFDTPEAKDLLWLLQAV 636

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L+ E        L S LF  S   I ++       + + +    +A    S+        
Sbjct: 637  LAPEKARELRSALASSLFGLSAQQIDQLNRDETAWDHLVDEFDGYARIWRSR-------- 688

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN---EQNSYS 545
              L  +      +     +L  ++G ++            + E L    +    E     
Sbjct: 689  GVLPMMRAVMVKYQIAENLLAGEEGERRLTDIL------HIGELLQEASQQLDSEHAVAR 742

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             L + IS              ++ + V+I T+H +KGLE P+V L          +    
Sbjct: 743  WLAQQISRPNAQSEAQLMRLESDRHLVQICTIHKSKGLEYPLVCLPFICGYRKQKQ---- 798

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                 ++  D             +  +   ++   +    E  RLLYV +TR+     I 
Sbjct: 799  -----AVYHDRHNFETHLSISHDDEELKAALELADEERLAEDLRLLYVALTRSVYHCSIG 853

Query: 666  KHSNTSNEKKSNQRTWYD------------------MVYDSFHNDERVKKIKLTNSINKD 707
                    K     T                     +V       +   +I+    I   
Sbjct: 854  VAPLIKGRKSKEGETDLHLSALGYVLQKGQKGDAALLVSSLNELSDENIEIEWVGEIADA 913

Query: 708  EWIAYEWSTHHPENTPLE--------------------REETIKQLMDEQKIPKKLFSPI 747
            +W +   +    E    +                    R  +   L        +    I
Sbjct: 914  QWCSQNENHLSLEARRFQRSIRDDWRVTSYSGLQYSASRAISQAALDHRAGALSESVDVI 973

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
               I     ++        ++ L +  +  +  + G  +H +L+ I       +      
Sbjct: 974  VQSIAPKLDIDARGEKQAAQSLLMTPHTFPRGASAGTFLHSILEDIDFGHPPNQAWLSEK 1033

Query: 808  YCTKNAKLWPAKEYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSVS------------ 852
              T       A   +  +  I R  L +    +         SE+               
Sbjct: 1034 LITSGFDENWAPILEQWVDDILRAELNDQGMQLADIPRHQQQSEMQFYLPVDKLLHSTEM 1093

Query: 853  --------------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
                            +   +   ++ G ID +   Q   ++ +YK++        +   
Sbjct: 1094 DALTRRYDPLSAQCAPLAFHQVKGMLKGFIDLVFCWQDKFYVVDYKSNWLGESSQSYTQE 1153

Query: 899  ---------THIAQLSIYEKILKD 913
                      +  Q  +Y   L  
Sbjct: 1154 AMANAMIEHRYDLQYQLYSLALHR 1177


>gi|171319519|ref|ZP_02908620.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
 gi|171095259|gb|EDT40249.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
          Length = 787

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 117/748 (15%), Positives = 224/748 (29%), Gaps = 161/748 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T         L   Y++  ++  V+DF +L++   +LL      A +R  
Sbjct: 150 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  + 
Sbjct: 257 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + S+ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EASTDAQEAGWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I T           +   ++ VL R    +  I            I          
Sbjct: 334 IRSLINTG----------MSRSEVAVLYRSNAQSRAIEHTL----MTSGIPYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +FV ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFVRVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        I ++    Q  S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVTGKAGTSLGGFATLIAKMRAETQQMSLPETVEYVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDAPARSIPLRAGAIAAPELGVDASDPSVDVLDPAPLDDPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++  +        A          
Sbjct: 646 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGWGRDWFSRP 705

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKN 749
               RE+ +   +              +
Sbjct: 706 GGGSREQVVDAAVSAPLPAFANKQRAAD 733


>gi|170702107|ref|ZP_02893019.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
 gi|170132982|gb|EDT01398.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
          Length = 787

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 117/748 (15%), Positives = 224/748 (29%), Gaps = 161/748 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T         L   Y++  ++  V+DF +L++   +LL      A +R  
Sbjct: 150 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  + 
Sbjct: 257 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + S+ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EASTDAQEAGWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I T           +   ++ VL R    +  I            I          
Sbjct: 334 IRSLINTG----------MSRSEVAVLYRSNAQSRAIEHTL----MTSGIPYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +FV ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFVRVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        I ++    Q  S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVTGKAGTSLGGFATLIAKMRAETQQMSLPETVEYVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDAPARSIPLRAGAIAAPELGVDANDPSVDVLDPAPLDDPAQSP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++  +        A          
Sbjct: 646 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGWGRDWFSRP 705

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKN 749
               RE+ +   +              +
Sbjct: 706 GGGSREQVVDAAVSAPLPAFANKQRAAD 733


>gi|260440441|ref|ZP_05794257.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2]
 gi|291043739|ref|ZP_06569455.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2]
 gi|291012202|gb|EFE04191.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2]
          Length = 671

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNVWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           +  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------RYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNAYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGNYRAKAEIDEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + E +++  R  +    ++ EL   +       
Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVGELVSWFARKGERDGKNVIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|294507833|ref|YP_003571891.1| ATP-dependent exoDNAse [Salinibacter ruber M8]
 gi|294344161|emb|CBH24939.1| ATP-dependent exoDNAse [Salinibacter ruber M8]
          Length = 1141

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 147/974 (15%), Positives = 291/974 (29%), Gaps = 108/974 (11%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMET------GNPTILKKAQTLQQASQTQ 60
            L    +      DL        ++++ + +   +              +A+ L   +  +
Sbjct: 203  LDPYVNAPDTVPDLTQAAAAVRAELDAWQARCPDALPEGRDDAMQAFDRAERLIAQTGVE 262

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +R  LL   F         ++  +       D  +  +  +DE +    R       
Sbjct: 263  TPAQRAELLE-LFAGVADEESADVTLKCWRGPHTDAYDWARTLRDEHLPALVRDVVQPAL 321

Query: 121  KSTLA-----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
            +   A      +   +     +   ++    L F DL+  T DLL+       +R  I +
Sbjct: 322  RRWRAYVHEEVVAFVRPAVERFASLRQAEGRLTFHDLLACTRDLLRDHPG---LRTTIQE 378

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                +L+DE QDT  +Q E++  LT          +    P +LF VGD+KQSIY F  A
Sbjct: 379  RHPRLLVDEFQDTDPLQAELLFYLTSRNPTETTWTDCRPLPGSLFIVGDDKQSIYRFRRA 438

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            + +         +            + L  +FRS   I    D  F    +   L +   
Sbjct: 439  DMEVFEAVGERIE------DTGGEAVMLTKNFRSLDVICDWCDAAFGALFDDADLMDRQA 492

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
            T       R                 +   +  +               A+  A RIA  
Sbjct: 493  TYTPFDPQRT---------------TERDVDGVRRINLDKVRGNWGTDIAAQDAGRIARF 537

Query: 353  ISNMIGTDTIFSNGKKRVI------QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            I              +            D L+L R +    +             I    
Sbjct: 538  IQGARDGGRSGRGADRHGALFAGGADYSDFLILTRTKSRLSVYAEALAE----RGIPYTV 593

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                 L +   +K L+ L    L  +D+++ V  LK PL   S+DD+++      E   +
Sbjct: 594  TGSEDLGEAAELKALVDLLTCALRPDDEVACVAYLKGPLVGASDDDLYRFSRAGGEFGRM 653

Query: 467  YE-----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI--- 518
            +E      ++   +    +F+    ++           P      ++             
Sbjct: 654  HEPVPASVLEALPHETAQRFEEAFGHLRAARRRLHEQRPGVAIEQLIDDLGLLAGAAHPP 713

Query: 519  -SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA----HSANHNEVR 573
             +  G+     +   + +            + L           +       +   + VR
Sbjct: 714  DAAEGSLRAGRVLRTITYVQDLAAQGLGWAEVLDELQRVVDGEEEVDGMTLETGGDDAVR 773

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP--------GIPIWIPQS 625
            +M VH AKGLE+PVVFL D  S+       + +         P              P  
Sbjct: 774  VMNVHQAKGLEAPVVFLADPYSRSGGPSVRRHLRREAGELVAPIVQGSGYRERVTHPPLG 833

Query: 626  KSRN--NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
              R          +  ++    E  RLLYV  TRA + L++  +    ++          
Sbjct: 834  WERPVDGRDESFRESEERHEAAEERRLLYVAATRAQNLLVVSTYPEKPDDGP-------- 885

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                          +   +        A   S       P   ++   +    +      
Sbjct: 886  -------WAPLYPHLDAADVPELGRPDAEPSSDRPEAPAPALTDQRAGRDAQLEAQ---- 934

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ-TFNRGLIIHKLLQVIFTLPEHK-- 800
                    + P     S  D    + + S L+        G  IH+LL+           
Sbjct: 935  --------SRPSYRTESVTDGDRASPVRSSLASEGYGEAFGSAIHQLLEQCVRTGRPTPW 986

Query: 801  -RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCP 858
              ++   S   +          +     + R L++ +     + D  Y+E  ++  +   
Sbjct: 987  TDESVAASVLERTGAPNTPDAVERATTMVQRFLDSRVWARVQAADRVYAEYPIAHAVR-R 1045

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP--YTHIAQLSIYEKILKDSYP 916
            +  ++  G ID    +     + ++KT     +  E +   + ++ QL  Y +       
Sbjct: 1046 ETPVVRRGVIDLAWRADGRWTLVDHKTDRVQGRPPETLSPDHAYVQQLQAYARAWTAVV- 1104

Query: 917  NKSLVCLLIYVSEP 930
            N+ +  + +++++ 
Sbjct: 1105 NEPVAEVGLWLADA 1118


>gi|307638133|gb|ADN80583.1| ATP-dependent DNA helicase [Helicobacter pylori 908]
 gi|325996733|gb|ADZ52138.1| ATP-dependent DNA helicase /epsilon proteobacterial type 2
           [Helicobacter pylori 2018]
 gi|325998327|gb|ADZ50535.1| putative ATP-dependent DNA helicase [Helicobacter pylori 2017]
          Length = 681

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 94/564 (16%), Positives = 180/564 (31%), Gaps = 118/564 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    +  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLCLSLKILQDNE---KLAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKQLS----------CAHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +  S                 +    
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHIKTLQSFKGSHKSVVCKEYPTQKE---- 312

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                           +  +AY I  ++       N        
Sbjct: 313 -------------------------------ESLDVAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +AL      ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALALMHVAAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K         +  + 
Sbjct: 388 RFFIKRVLNKPPRGLGKITQEWIFSLLDEEGLNLEEALKLGAFKDKLNPKNEYALKKFMA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGHLRE-AFEISVEKFCERFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +    +    + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESTLDVHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSF 689
                S   +    +    + ++ 
Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQ 611


>gi|15646087|ref|NP_208269.1| DNA helicase II (uvrD) [Helicobacter pylori 26695]
 gi|2314653|gb|AAD08516.1| DNA helicase II (uvrD) [Helicobacter pylori 26695]
          Length = 682

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/573 (17%), Positives = 184/573 (32%), Gaps = 120/573 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 159 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 215

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 216 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 257

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              I++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 258 GAKIVKLETNYRSSAEILACANSLISHNQHRHIKT--------LQSFKGSHKSVVCKEYL 309

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 310 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 334

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   IKD +A    +  ++D
Sbjct: 335 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGALSFYERAEIKDALAFMHLVAKKDD 388

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K         +  I 
Sbjct: 389 RFFIKRVLNKPPRGLGKITQEWIFSLLDEEGLNLEEALKLGAFKDKLNPKNEYALKQFIA 448

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSY- 544
            I  L   A   S  +F +  L      + +       E    + E L       + +  
Sbjct: 449 MIGRLRE-AFEISVEEFCSRFLEETNLLKSYEKEDNYEEREGFVKELLTLVKEYFKTNPT 507

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            SL + ++E              N  +V  M+VH +KGLE   VF++      F H    
Sbjct: 508 HSLLDFLNESVLDAHNT-----ENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH---- 558

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                              ++S  EE  RL YV +TRA ++L +
Sbjct: 559 -------------------------------RGFNQESDLEEERRLAYVAITRAKEELQL 587

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                 S   +    +    + ++   ++    
Sbjct: 588 SYVKERSYFGRKISCSPSVFLEEAQLLNQDNPP 620


>gi|325201855|gb|ADY97309.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240149]
 gi|325208393|gb|ADZ03845.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis NZ-05/33]
          Length = 671

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 112/609 (18%), Positives = 202/609 (33%), Gaps = 116/609 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +++L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVVKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                 +    A  +   I   I    I  +      Q  D  VL R +    +     R
Sbjct: 314 ---ACQNEQHEADWVVSQI---IKQKLIGGDKT----QYADFAVLYRGKHQARIFEEALR 363

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 +I    +      D   IKD+++  R + +  DD +F+  + +P     +  + 
Sbjct: 364 ----GVRIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVTLG 419

Query: 455 KICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           K+    HE E          E +    N      Q  +         A+     +F   +
Sbjct: 420 KLNAYAHEHECSLYEAAQTEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFINSL 479

Query: 508 LGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           L         ++      G      + + +++  R       ++ EL   +        +
Sbjct: 480 LEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLEGK 539

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + V + T+H AKGLE P VFLV     V  H                       
Sbjct: 540 D-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN---------------------- 576

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                          +++   EE  RL+YVG+TRA  QL +        +          
Sbjct: 577 -------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEPSR 623

Query: 684 MVYDSFHND 692
            + +    D
Sbjct: 624 FIDEMPQED 632


>gi|148244458|ref|YP_001219152.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326285|dbj|BAF61428.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 717

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 98/544 (18%), Positives = 186/544 (34%), Gaps = 112/544 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE   K N ++DF +L+I + +       +  +         HILIDE QDT++IQ
Sbjct: 174 VFELYEVHCKTNELIDFAELLIRSYE---LLKNNVNLLNHYKNRFKHILIDEFQDTNMIQ 230

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L           S    +F VGD+ QSIY + GA  + + +             
Sbjct: 231 YKWIKLLF----------SGNNKVFCVGDDDQSIYGWRGANIENITKLCTDF-------- 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST +ILT  + + +   +  G S                     LW 
Sbjct: 273 VPIKTIRLEQNYRSTNNILTASNALIAHNTSRMGKS---------------------LW- 310

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  +  + +          + +       A  +  +I  +I             + 
Sbjct: 311 ------TNAIDGELIDMYEAQTEIDE-------ADYVVSSIQKLITNG----------VL 347

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + +   +       Y I  +        +   IK  ++  R I + +
Sbjct: 348 PNDCAILYRLNTQSRIFEEVL----IKYNIPYIIYGGLKFFERAEIKHALSYLRLIENSD 403

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK----FANCGISKFQHVIKY 487
           D+L+F  ++  P        I KI    ++   ++++   +     +    +        
Sbjct: 404 DNLAFERVVNFPTRGIGNTTINKIRIFAQNNHVSLFQATIQVSSTLSTRTTNALNGFTNL 463

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I ++    +  +  +    +L        + +   +   + L+E +    + +QN+   +
Sbjct: 464 IEKMKDDTKNLNLSEKIVNLLNMSGLMAHYSNDKTSNKKENLEELITAAKQYKQNN--DM 521

Query: 548 QELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            E+I  +           +   N  V++MT+H+AKGLE P VFL      +  ++  K  
Sbjct: 522 NEIIGFISLASIDSGGNTNTLTNQNVQLMTMHSAKGLEFPYVFLSGMEEGLSPYRQSKN- 580

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                            K    +E  RL YVGMTRA  +L +  
Sbjct: 581 ---------------------------------KPHLIDEERRLCYVGMTRAMKKLSLSY 607

Query: 667 HSNT 670
               
Sbjct: 608 TMKR 611


>gi|119356509|ref|YP_911153.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM
           266]
 gi|119353858|gb|ABL64729.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM
           266]
          Length = 734

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 111/583 (19%), Positives = 193/583 (33%), Gaps = 118/583 (20%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           L   Q    + ++ F   + F+ +       +A  +   Y    ++N  LDF+DL+I   
Sbjct: 138 LNTLQGIISRAKNSFILPEEFRRSAGDYNQQIAAKVYDLYTRKLRENNALDFDDLLIKPL 197

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
           +L ++  +   +   +     ++LIDE QDT+  Q+   + L+             R +F
Sbjct: 198 ELFREHPM---VLEALQDTFRYLLIDEYQDTNKAQYLAAKMLSA----------KHRNIF 244

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIYS+ GA+   +L  +                 +L  ++RST  IL   + V
Sbjct: 245 VVGDDAQSIYSWRGADISNILNFQDDY--------TDALTFKLVENYRSTGTILQAANSV 296

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                    L +     + HRS+                                  +L 
Sbjct: 297 IRNN-----LRQIKKELVSHRSAGDPL------------------------------TLI 321

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +    A +I   I ++           ++  + +   V  R    + ++  L R   
Sbjct: 322 EARNERHEAEKIGEYIHSI---------RIEKGYEFRSFAVFYRTNAQSRVLEDLMR--- 369

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
              +I               IKD +A  RF+L+  D  S + ++  P     E  I K+ 
Sbjct: 370 -QNRIPYKIFGSVSFYKRKEIKDAVAYLRFLLNDRDSESLLRIINFPPRKIGETSIGKLR 428

Query: 458 T-QRHETETVYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                E  T+YE I +              +     I  L  +A+  + +   T +    
Sbjct: 429 EFAEAEGITLYEAITRADEGQFQSRLVNSLKGFSSLIEALRLLAETGTVYAVLTELFSLT 488

Query: 512 KGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                       E     + L E L+       N+      L   LE          S +
Sbjct: 489 SIPLLLKEENTAESLARHENLQELLSMARDFSDNN-PDQGSLGDFLETISLASNYDESQD 547

Query: 569 HNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            +  V +MTVH +KGLE PVVF+     ++F                             
Sbjct: 548 SDNYVSLMTVHASKGLEFPVVFITGLEERLFP---------------------------- 579

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                   +   +    EE  RL YV MTRA +++ +      
Sbjct: 580 --------LNCYEPEQLEEERRLFYVAMTRAQEKIFLSWAQTR 614


>gi|21233448|ref|NP_639365.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770412|ref|YP_245174.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21115293|gb|AAM43247.1| DNA helicase II [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575744|gb|AAY51154.1| DNA helicase II [Xanthomonas campestris pv. campestris str. 8004]
          Length = 728

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 97/575 (16%), Positives = 189/575 (32%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 154 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGHVFVVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 261 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 307

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR +   
Sbjct: 308 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +       +               
Sbjct: 338 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEALIAEQL----PYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 384 FERAEIKDALAYLRMLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 443

Query: 472 KFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                     +        +  + +L          +    +L     R+ +        
Sbjct: 444 LCTQENTLAARARNALATFLSLVGQLQAETGEMDLAERIDHVLMRSGLREHWAKESRGGL 503

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    V++MT
Sbjct: 504 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 563

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 564 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 589

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 590 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 624


>gi|326559747|gb|EGE10157.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 7169]
          Length = 689

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 104/601 (17%), Positives = 203/601 (33%), Gaps = 126/601 (20%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +   +  +K+   +++ I  +D   T    +           L   YE  
Sbjct: 139 RDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLDDPEDLGFVH-----LYELYERN 193

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI     +L++      ++ K    I ++L+DE QDT+  Q+E+I+ L 
Sbjct: 194 LRAYNAVDFDDLIAMPVRILRESHE---VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLV 250

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                             VGD+ QSIY++ GA+P+ +   K+              +++L
Sbjct: 251 GRL----------GRFTVVGDDDQSIYTWRGAKPENMALLKQDFPN--------LEVVKL 292

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  IL   + V +  E+    S                     LW         
Sbjct: 293 EQNYRSTNHILGAANAVIANNEHMFEKS---------------------LW-------SD 324

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           + + ++    +  +   +       A R+A  I          ++  +         VL 
Sbjct: 325 KGDGEKIRVITCNNDFDE-------AERVAKEI---------LTHRLRNNQTWDRYAVLY 368

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R       +    R L+    I    +          IKDLM   R I++ +DD +F+ +
Sbjct: 369 RSNFQARALEAQLRQLE----IPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRV 424

Query: 441 LKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI--SKFQHVIKYIHELI----- 492
           + +P        + K+         ++     +        +K   +I+   E I     
Sbjct: 425 INTPKRGIGSVTLEKLGLFAQHCGTSLLGACTRAGVKDALGAKAGAIIESFGEFINYYTH 484

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFL----NFTLRNEQNS 543
            +     P      ++              N       +D ++           R +   
Sbjct: 485 QLHDNSDPMPLVRQMITETGYIDYVKESSKNPQQEKGRLDNIEALYLSIAALINRADDEH 544

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             ++  +I ++       ++    N N+V +MT+H AKGLE   V+++    ++  H + 
Sbjct: 545 DKTIDAVIRKMVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDYVYIIGCEEKLLPHVNS 604

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                 +  EE  RL+YVG+TRA  +L 
Sbjct: 605 IMS-----------------------------------ANIEEERRLMYVGITRAKSELT 629

Query: 664 I 664
           +
Sbjct: 630 L 630


>gi|238760176|ref|ZP_04621323.1| DNA helicase II [Yersinia aldovae ATCC 35236]
 gi|238701612|gb|EEP94182.1| DNA helicase II [Yersinia aldovae ATCC 35236]
          Length = 720

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 115/700 (16%), Positives = 221/700 (31%), Gaps = 144/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENASPYSIIAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D  ++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHMDANLPQDFQILDSDDQLRLLKRLVKALNLDEKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINGKKDEGLRPKHIESYGNPIEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I     +   +IL+DE QDT+ IQ+  IR L  D             +  VGD+ 
Sbjct: 204 PH---ILNHYRERFTNILVDEFQDTNNIQYAWIRLLAGD----------RSNVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + + R  +               I L  ++RST++IL   + + +  + 
Sbjct: 251 QSIYGWRGAQVENIQRFLKDFP--------GAETIRLEQNYRSTSNILKAANTLIANNDG 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RMGKN---------------------LW-------TEGAEGEPISLYCAFNELDES---- 330

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              R +   I                     D  +L R    + ++            + 
Sbjct: 331 ---RFVVNRIKAWQDNGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD +A  R I ++ DD +F  ++ +P     +  +  I    R  
Sbjct: 374 YRIYGGQRFFERQEIKDSLAYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVIRQTARDR 433

Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +        A    S  Q  ++ +  L +       H     ++        
Sbjct: 434 QLTLWQSTRAMLQEKVLAGRAASALQRFVELVDSLANETADMPLHVQTDRVIRDSGLWSM 493

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G +    ++ L+E +  T +   Q+    L  L + L        +   +A  + 
Sbjct: 494 YEQEKGEKGQARVENLEELVTATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQANAYQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMALDESG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        EE  RL YVG+TRA  +L +C   +  
Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLCYAESRR 619


>gi|315656421|ref|ZP_07909310.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492980|gb|EFU82582.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 877

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 106/707 (14%), Positives = 200/707 (28%), Gaps = 144/707 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L   ++                 + ++ ++L   +        
Sbjct: 85  GAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLVGNAAKYMWVST 144

Query: 66  FSLLSSFFL---------TQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F       L         T+ F+      T+ +  +    +         K    +  + 
Sbjct: 145 FHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIKGRGLDPKRFPPKSFAAKISQA 204

Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++   T ++F           L   +   Y++  ++    DF+DLI +T  L K      
Sbjct: 205 KNELITPEVFALGAGVDKMSQLTAEIYTEYQQLLRRANAFDFDDLIASTVYLWKAHPD-- 262

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I  +   +  H+L+DE QDT+  Q+E+IR LT            P  L  VGD  QSIY
Sbjct: 263 -ILARYRAKFLHVLVDEYQDTNPAQYELIRLLT---VGAAGDAQPPAELTVVGDSDQSIY 318

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA  + +   +              + + L  ++RST  IL+V + + S  E  +  
Sbjct: 319 AFRGATIRNIEEFESDFP--------GATTVYLEQNYRSTGTILSVANAIISENEGRRKK 370

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +  +      ++                                    L    +    A 
Sbjct: 371 NLWTDAGQGVQAV-----------------------------------LYAADTDRDEAA 395

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   +  +    +             +  V  R    +  +  +         I     
Sbjct: 396 FIVRELQKLRQEGS----------SWDEFAVFYRTNAQSRSLEEML----TREGIPYRVV 441

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC---------- 457
                 D   IKD +A      +  DD + + +L  P     +  +  I           
Sbjct: 442 GGTKFYDRREIKDAIAYLCAAANLADDGNLLRVLNEPKRGLGDKAVQTIREVSLRENLDF 501

Query: 458 -TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQ 515
                +      +    +    +     +  +  +  + A      +     L       
Sbjct: 502 GQALRQFLPGGTHHGDLSAKASAGIAEFVGVLDAMRALDAASAPLDEILDTALEDSGYLP 561

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANH-- 569
           +       +    ++ L E  N       +   + L + +  +       +   +A    
Sbjct: 562 KLRKSNDPQDDARVENLAELRNVAQDFSLSEPDARLADFLERISLVADADQLPDTAAQPE 621

Query: 570 -----------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                       EV +MTVHTAKGLE   VF+      +F H                  
Sbjct: 622 RPADPAHPAAPPEVTLMTVHTAKGLEFNTVFVTGMEDGLFPHSRSL-------------- 667

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                      E  RL YV +TRA  +L + 
Sbjct: 668 --------------------ENPQDIAEERRLAYVAVTRARQRLYLT 694


>gi|261823387|ref|YP_003261493.1| DNA-dependent helicase II [Pectobacterium wasabiae WPP163]
 gi|261607400|gb|ACX89886.1| DNA helicase II [Pectobacterium wasabiae WPP163]
          Length = 720

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 116/722 (16%), Positives = 222/722 (30%), Gaps = 132/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  +   L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRINHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    + + +   LK  ++    +  +   R         
Sbjct: 90  FHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLIRALNLDEKQWPPRQAMWFINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +           + +   Y+EA  +  ++DF +L++  ++L   +     +
Sbjct: 150 KDEGLRPQHIESYGNPIEQTWQRVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---V 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   +IL+DE QDT+ IQ+  I  L  D             +  VGD+ QSIY +
Sbjct: 207 LNHYRERFTNILVDEFQDTNRIQYAWIHMLAGD----------SAKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +    +               I L  ++RST++IL   + + +      G + 
Sbjct: 257 RGAQVENIQLFLKDF--------AGAETIRLEQNYRSTSNILKAANALIAHNGGRLGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +       AR +
Sbjct: 308 --------------------LW-------TDGVEGEPISLYCAFNELDE-------ARYV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                    KD  +L R    + ++            +       
Sbjct: 334 VNRIKAWQENGGAL----------KDNAILYRSNAQSRVLEEAL----LQQSMPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD ++  R I ++ DD +F  ++ +P     +  +  +    R    T+++
Sbjct: 380 MRFFERQEIKDSLSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +             +  Q  I+ I  L +       H      +        +    G
Sbjct: 440 ATRALLQEKVLAGRAAASLQRFIELIDALAYETSELPLHVQTDRAIKDSGLWSMYEQEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    ++ L+E +  T +   Q     L  L + L        +    AN + V++MT+
Sbjct: 500 EKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAALEAGEGQADANQDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA ++L I    +     K         V +         +
Sbjct: 591 -----RLEEERRLAYVGVTRAMEKLTITYAESRRLYGKEAYHRPSRFVGELPEECVEEVR 645

Query: 698 IK 699
           ++
Sbjct: 646 LR 647


>gi|188993614|ref|YP_001905624.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167735374|emb|CAP53588.1| DNA helicase II [Xanthomonas campestris pv. campestris]
          Length = 723

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 97/575 (16%), Positives = 189/575 (32%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 149 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 205

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 206 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGHVFVVGDDDQAIYGWRGA 255

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 256 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 302

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR +   
Sbjct: 303 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 332

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +       +               
Sbjct: 333 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEALIAEQL----PYRVYGGMRF 378

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 379 FERAEIKDALAYLRMLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 438

Query: 472 KFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                     +        +  + +L          +    +L     R+ +        
Sbjct: 439 LCTQENTLAARARNALATFLSLVGQLQAETGEMDLAERIDHVLMRSGLREHWAKESRGGL 498

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    V++MT
Sbjct: 499 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 558

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 559 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 584

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 585 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 619


>gi|296121114|ref|YP_003628892.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296013454|gb|ADG66693.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 845

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 106/689 (15%), Positives = 222/689 (32%), Gaps = 124/689 (17%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
           F      +      ++       Y++       +DF+DL+++   +LK+      +R  +
Sbjct: 154 FAQQAGERVGTHLDSVVAKAYGRYQQILLDANAVDFDDLLLHVVTILKENP---NLRQSL 210

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
           D+    IL+DE QDT+  Q++++ +L+++             L A GD  QSIY + GA+
Sbjct: 211 DERYRFILVDEYQDTNQAQYQIVSALSQN----------EPNLCATGDPDQSIYGWRGAQ 260

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            + +LR +R   +          ++ L  +FRST +IL   D +       +  S  ++ 
Sbjct: 261 IENILRFERDFPR--------VKMVRLEDNFRSTPEILAAADDLIRHNTQRKAKSLRTSN 312

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                         V++ +      +                          A  +A  I
Sbjct: 313 PSGL---------PVEIRQYADGFQE--------------------------ADSLAAEI 337

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
              + +            Q  D  +  R    +  I           ++           
Sbjct: 338 RERVASGER---------QYSDFAIFYRVNSLSRSIETAL----GRARVPFAITGGVAFY 384

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK 472
           +   +KDL+A  R I + +D  +F  ++ +P+    ++   K+          +++ + +
Sbjct: 385 ERTEVKDLIAYLRVIENPDDRPAFRRIVNTPVRGIGKNSQEKLDRWASARNLNLWDAVHQ 444

Query: 473 ------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-- 524
                          +     + EL   +      +   +I+      Q        E  
Sbjct: 445 IDASIGLPKKAEYSLKLFANLLDELARRSH-GPIAELLEVIVERTGYLQNLSGLEPEEYA 503

Query: 525 -VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKG 582
                ++E +    + +Q+       L   LE             +  +V++MT+H+AKG
Sbjct: 504 NRKANVEELVASARQFDQDHVEG-GSLSEFLETCSLVQDADTIDESAGQVQLMTLHSAKG 562

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE P V+LV     +  H+                                  ++     
Sbjct: 563 LEFPCVYLVGVEHGLLPHERS--------------------------------LREGDPL 590

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             EE  RLL+VGMTRA ++L +      S   +         +      +         +
Sbjct: 591 QIEEERRLLFVGMTRAREELYLTWTRLRSTHGRLLSTIASQFL---TELNVARHDYSTDD 647

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
             +  +W   E       ++ L +     +   ++       +    D       + + +
Sbjct: 648 DTSFGDWSPQEMRRGTSGDSILAQMADWGEQARKESSNPSDKATSTED-------DQADL 700

Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
              G  +     S+  T  R   I ++L+
Sbjct: 701 AEPGVDSQLFASSEEDTQPRATFIDRVLE 729


>gi|85714693|ref|ZP_01045680.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
 gi|85698578|gb|EAQ36448.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A]
          Length = 814

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 99/562 (17%), Positives = 178/562 (31%), Gaps = 123/562 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+   K     DF DL++    L ++      +  +       IL+DE QDT++ Q
Sbjct: 202 LYAAYQARLKILNAADFGDLLLENIRLFREHPD---VLRQYQNRFKFILVDEYQDTNVAQ 258

Query: 193 WEVIRSLTEDFFVG-------------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +  +R L++                      +  + +  VGD+ QSIY + GAE   +LR
Sbjct: 259 YLWLRLLSQTPPSAPALFPVPSAEEGPDARTARSKNICCVGDDDQSIYGWRGAEVDNILR 318

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +               +I L  ++RST  IL     + +  E   G +           
Sbjct: 319 FEHDF--------SGAKVIRLERNYRSTGHILAAASHLIAHNEGRLGKTL---------- 360

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                  + ++ + T  +DS  +       AR I   I  +   
Sbjct: 361 ------------------RTEDIDGEKVTVTGSWDSEEE-------ARAIGEEIEQLQRA 395

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                       +  +I +LVR              L     +           +   I+
Sbjct: 396 GE----------KLNEIAILVRASFQMREFEDRFVTL----GLPYRVIGGPRFYERAEIR 441

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI 478
           D +A  R I S  DDL+F  ++  P     +  +  +    R     + E  +       
Sbjct: 442 DALAYLRLINSPADDLAFERIVNVPKRGLGDATVQMLHGIARKRQIPLSEAARAVVETDE 501

Query: 479 SK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529
            K       + +++         +     +   ++L      + +      +     + L
Sbjct: 502 MKPKARGSLRALLESFDRWRLQRESMRHTELAEIVLDESGYTEMWQKDRSADAAGRLENL 561

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            E +      E         L   LE     + R  +A+ + V +MT+H+AKGLE   VF
Sbjct: 562 KELIRSMEEFEN--------LQGFLEHISLVMDRDGAADEDAVSVMTLHSAKGLEFDTVF 613

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L      +F H+                                  +    ++  EE  R
Sbjct: 614 LPGWEEGLFPHQR--------------------------------ALDEQGRAGLEEERR 641

Query: 650 LLYVGMTRASDQLIICKHSNTS 671
           L +VG+TRA  +  +   +N  
Sbjct: 642 LAHVGLTRARRRAKLYFATNRR 663


>gi|329894799|ref|ZP_08270599.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
           IMCC3088]
 gi|328922693|gb|EGG30027.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
           IMCC3088]
          Length = 715

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 98/575 (17%), Positives = 190/575 (33%), Gaps = 115/575 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YEEA +++ ++DF +L++  ++L   +     +         HIL+DE QDT+ +Q+
Sbjct: 174 YTAYEEACERSSLVDFAELLLRAHELWLNQPT---LLKHYQNRFRHILVDEFQDTNTVQY 230

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +R L            +   + AVGD+ QSIY + GA+ + + R  +           
Sbjct: 231 AWLRVLAG----------TQIPVMAVGDDDQSIYGWRGAKIENIQRFSQDF--------S 272

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I L  ++RST  IL   + V        G                       LW  
Sbjct: 273 DTQTIRLEQNYRSTQTILKAANGVIDNNFGRLGK---------------------DLW-- 309

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                      ++    + F+   +       AR I   I          ++        
Sbjct: 310 -----TEGDEGEKIDLYAGFNEHDE-------ARFIVDRIDAWHRDGNPRAS-------- 349

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             + VL R    + ++            I           + L I++ ++  R + ++ D
Sbjct: 350 --VAVLYRSNAQSRVLEEAF----LRADIPYRIYGGQRFYERLEIRNALSYMRLVHNRND 403

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS-----KFQHVIKY 487
           D +F  ++ +P        I  +    R  ++++++   +    G+        Q  +  
Sbjct: 404 DAAFERVINTPTRGIGAKTIETLRAVARDHSQSLWQSAIQLCGSGLPARASSALQGFLSL 463

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGR---QQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           I  L       +  +    ++         Q+     G   ++ L E +    +  +   
Sbjct: 464 IETLDEQTDGLALGELTDHVVERSGLIAFHQKEKGERGQARVENLQELVVAAGQF-RADD 522

Query: 545 SSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            S+  L   L+          + +  + V++MT+H+AKGLE P+VFL      +F H+  
Sbjct: 523 ESITPLQQFLDNAALDAGEGQAEDFEDSVQLMTLHSAKGLEFPLVFLAGMEEGLFPHQMS 582

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            +                                       EE  RL YVG+TRA  +L+
Sbjct: 583 SQDPT----------------------------------RLEEERRLCYVGITRAMQKLV 608

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           +            N       V +      +  ++
Sbjct: 609 LTYAETRRMHGSENYNAISRFVREIPDTCLQEVRL 643


>gi|153004223|ref|YP_001378548.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152027796|gb|ABS25564.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 1196

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 137/989 (13%), Positives = 282/989 (28%), Gaps = 99/989 (10%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
             D+       ++      S   +          + +++A      ++    + +  L + 
Sbjct: 211  ADVDAARARLLAAAEAIASSGPQATGAGARDLVEAVRRALDALAPDDVRGEVDAEGLRRL 270

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
                     + + K    L+E          ++           +      L     A Y
Sbjct: 271  LALGAAAKGKRLGKADGPLRELKDALAAAAEELGPLAAEGLAAATKEELCLLVAEAEARY 330

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
               K+    +DF+DL++   DLL+       +R ++      +L+DE QD + +Q E+  
Sbjct: 331  AATKRAARAVDFDDLLVRARDLLRHDGA---LRAELRARYRALLVDEYQDVNGVQQELFE 387

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
             L+           +   L AVGD KQSIY F GA+     R  R  +           +
Sbjct: 388  LLSG------PGGPAGPLLVAVGDLKQSIYRFRGADVAVFARLIRRLEA------GDGRV 435

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            + L  + RS   ++ +V++VF+        +      IR   +        +        
Sbjct: 436  LHLSDNHRSAPAVVELVNEVFARCMRPPDGAPPRDDEIRFSDADRLVPRRPEGARPACEL 495

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN--------MIGTDTIFSNGKKR 369
             +   +                      A  IA  I           +         + R
Sbjct: 496  LEDHEDG------------NAAERRRREAGAIARRIRAVVSGAAGVAVRERGEGGAERVR 543

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
              +  D+ +L R+           R       I               ++DL  L   + 
Sbjct: 544  RPRLSDVAILFRRLTQIGEYERALRA----AGIPYRLARGGGFYQAPEVRDLGELLATLA 599

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQ---------------------------RHE 462
               D + +  +L+SP+   S+  +F +                                 
Sbjct: 600  DPSDAIGWAAVLRSPMCGVSDATLFLLARAGLARLARVSPERLAAEVARALGEGGAGALA 659

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             E     +        ++   ++    EL  +    +P    T  +         ++   
Sbjct: 660  PEAAERAVASVPAEDWARLTRLLDAWRELHALRDRLAPDALLTRAVERLDLDAVLLAGPD 719

Query: 523  NEVID-VLDEFLNFTLRNEQNSY--SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
             E     + + +    R   +    + L   +      PP    A     + V ++TVH 
Sbjct: 720  GERRAVNVAKAIALAARFGSDGGTAAELARHLRAQASRPPREPEAEVEAGDAVALLTVHQ 779

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            AKGLE PVVF+ D           ++  +                       V D   H 
Sbjct: 780  AKGLEWPVVFVPDL--GARPRSDARRALLDAEGRLCAMRYDPAADRFEETASVRDARAHE 837

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK----KSNQRTWYDMVYDSFHNDERV 695
            +++   E  RLLYV MTRA D+L++   ++   E               +      +E  
Sbjct: 838  RRAAAAESRRLLYVAMTRARDRLVLSGEASNGAESWRGLVEVAAEARAELVRRIALEEAG 897

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                    ++ D+  A                      +   ++ +    P ++ +    
Sbjct: 898  SAPACGPPVDGDDAPAPAEPPAVAPPRLAGAPRVAAVRVAVTELAEYARCPRRHLLGRVL 957

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAK 814
             L                    +   RG + H +L       P  +R+  + +   +   
Sbjct: 958  GLP-----EPHGARGAPADDPGRATARGTLAHAMLAEADLAAPPLERRAQLAAAAARRGY 1012

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINCPKKD---IIISGR 867
               +   + +L  + R                     EV    ++    +    + + G 
Sbjct: 1013 DPRSPGVRRILGEVARFANAEGGRALAEAARDGRLRREVPFLLRLPSRTRGDPSVYLVGA 1072

Query: 868  IDQISIS--QQNIFIFEYK--THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
            ID + +    + + + +YK  T              +  QL  Y    + ++P+  +   
Sbjct: 1073 IDALMVDRRARALTVVDYKYATWRP------DAADRYRLQLLAYVLAARRAHPDARVRAR 1126

Query: 924  LIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
            L ++       +      +     +   P
Sbjct: 1127 LQFLRGDC-RAVDVTPGERELTRFAADAP 1154


>gi|326387191|ref|ZP_08208801.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208372|gb|EGD59179.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 764

 Score =  271 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 119/787 (15%), Positives = 233/787 (29%), Gaps = 126/787 (16%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--SQTQCIEERFSLLSSFFLT 75
           +  WP     V+  NK      E     I    + +           +          LT
Sbjct: 59  RLAWPSEILCVTFTNKAAREMRERVGHLIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLT 118

Query: 76  QKFTPQKNIITQEINKKS--PDLKEKLKKSQDEFIKIRDRFNT-------YKMFKSTLAS 126
             FT         + K+    +  +  +    +   + DR+             ++   +
Sbjct: 119 SNFTILDTDDQLRLLKQLIQAEGVDDKRWPARQLAGLIDRWKNRGLNPADLDALENEAYA 178

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
               +   A Y++  +     DF DL+++  ++ ++      +  +  Q   ++++DE Q
Sbjct: 179 NGRGQRFYALYQDRLRSINACDFGDLLLHMLNIFRRE---RDVLEQYQQRFRYVMVDEYQ 235

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q+  +R L +            R +  VGD+ QSIYS+ GAE   +LR ++    
Sbjct: 236 DTNAVQYLWLRLLAQ----------GRRNICVVGDDDQSIYSWRGAEVANILRFEKDFP- 284

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I L  ++RST  IL     +        G +                  
Sbjct: 285 -------GAKVIRLEQNYRSTPHILGAASGLIEENSERLGKTLW---------------- 321

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                 W +  +           ARR+   I  +          
Sbjct: 322 --------TELDGGDKVRIVGVWDAPEE-----------ARRVGEEIERLEREGCPLDA- 361

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    I +LVR +  T               ++      F   +   I+D +A  R
Sbjct: 362 ---------IAILVRAQFQTREFEDRF----LQIGLAYRIVGGFRFYERAEIRDALAYLR 408

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQ--- 482
            I S  DDL+F  +  +P     +  + K+    R ++  +     + A+      +   
Sbjct: 409 LIASPSDDLAFERIWNTPKRGLGDKTLEKLHRYARAQSIPLLRAAIEIADTDELPARARG 468

Query: 483 ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
               + +        +   +P +    +L          +    +    L+         
Sbjct: 469 TLVALARDFARWRDESARLTPAELARTVLDESGYTAALQAERSTDANGRLENLSELARAM 528

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E+      + L   LE     +   +SA+  +V +MT+H AKGLE   VFL      VF 
Sbjct: 529 EE-----YETLSDFLEHVSLVMDNDNSADEAKVTVMTMHGAKGLEFDQVFLPGWEEGVFP 583

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +       +                                ++ EE  RL YV +TRA 
Sbjct: 584 SQRSLDEGGL--------------------------------ASLEEERRLAYVAITRAR 611

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +  I   +N     +         + +       V++  ++   +       E S    
Sbjct: 612 KRCTILHAANRRIYGQWTSSIPSRFIAELPEVH-VVEESSMSGGASLWRAQWSEQSDPFA 670

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                +  +   +    Q+   +  +     I E      S                ++ 
Sbjct: 671 HVARNQPGKVASRGPGWQRAAAQPLNTAPRRIAETGRSAASMAGKARPEFARGTRVFHEK 730

Query: 780 FNRGLII 786
           F  G ++
Sbjct: 731 FGYGTVV 737


>gi|296113478|ref|YP_003627416.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4]
 gi|295921172|gb|ADG61523.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4]
 gi|326559400|gb|EGE09825.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 46P47B1]
 gi|326566037|gb|EGE16197.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 12P80B1]
 gi|326568114|gb|EGE18198.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC7]
 gi|326568531|gb|EGE18603.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC1]
 gi|326572434|gb|EGE22426.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC8]
 gi|326572519|gb|EGE22508.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis CO72]
          Length = 689

 Score =  271 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 104/601 (17%), Positives = 203/601 (33%), Gaps = 126/601 (20%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +   +  +K+   +++ I  +D   T    +           L   YE  
Sbjct: 139 RDNLSGAERRELVHEAIKKISDWKNDLIAPKDAAETLDDPEDLGFVH-----LYELYERN 193

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI     +L++      ++ K    I ++L+DE QDT+  Q+E+I+ L 
Sbjct: 194 LRAYNAVDFDDLIAMPVRILRESHE---VKDKWQNRIRYLLVDEYQDTNTAQYELIKLLV 250

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                             VGD+ QSIY++ GA+P+ +   K+              +++L
Sbjct: 251 GRL----------GRFTVVGDDDQSIYTWRGAKPENMALLKQDFPN--------LEVVKL 292

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  IL   + V +  E+    S                     LW         
Sbjct: 293 EQNYRSTNHILGAANAVIANNEHMFEKS---------------------LW-------SD 324

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           + + ++    +  +   +       A R+A  I          ++  +         VL 
Sbjct: 325 KGDGEKIRVITCNNDFDE-------AERVAKEI---------LTHRLRNNQTWDKYAVLY 368

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R       +    R L+    I    +          IKDLM   R I++ +DD +F+ +
Sbjct: 369 RSNFQARALEAQLRQLE----IPYKLSGGTSFFARTEIKDLMGYLRIIINPDDDAAFLRV 424

Query: 441 LKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI--SKFQHVIKYIHELI----- 492
           + +P        + K+         ++     +        +K   +I+   E I     
Sbjct: 425 INTPKRGIGSVTLEKLGLFAQHCGTSLLGACTRAGVKDALGAKAGAIIESFGEFINYYTH 484

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFL----NFTLRNEQNS 543
            +     P      ++              N       +D ++           R +   
Sbjct: 485 QLHDNSDPMPLVRQMITETGYIDYVKESSKNPQQEKGRLDNIEALYLSIAALINRADDEH 544

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             ++  +I ++       ++    N N+V +MT+H AKGLE   V+++    ++  H + 
Sbjct: 545 DKTIDAVIRKMVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDYVYIIGCEEKLLPHVNS 604

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                 +  EE  RL+YVG+TRA  +L 
Sbjct: 605 IMS-----------------------------------ANIEEERRLMYVGITRAKSELT 629

Query: 664 I 664
           +
Sbjct: 630 L 630


>gi|209523272|ref|ZP_03271828.1| UvrD/REP helicase [Arthrospira maxima CS-328]
 gi|209496423|gb|EDZ96722.1| UvrD/REP helicase [Arthrospira maxima CS-328]
          Length = 1070

 Score =  271 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 144/879 (16%), Positives = 267/879 (30%), Gaps = 119/879 (13%)

Query: 85   ITQEINKKSPDLKEKLKKSQDEF--IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              +   +    +K+ LK  ++E     + +     ++ ++      +   L   Y E K 
Sbjct: 248  SKKNWGENIQTVKDALKALREELVKPSLNENLINAEVGEADHKLAEMLAALKEAYREVKD 307

Query: 143  -------KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
                   +  VL F DL I     L+       I+    Q     L+DE QDT+ IQ E+
Sbjct: 308  HLQKLKWQGRVLTFADLEIGALTALQNNPT---IQLYYQQRWRSFLVDEFQDTNPIQGEI 364

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +  LT+              L  VGD+KQSIY F  A+     + ++       +     
Sbjct: 365  LELLTQ-----------TGDLTIVGDKKQSIYGFRRADIGVFNKFRKRIIDHQGD----- 408

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
              I L  SFR+   ++  +++VFS                   + RI      +  +  V
Sbjct: 409  -EIILNQSFRTHQKLINQINQVFS--------PLLGDLRQDLEAVRIDPPSPRETLQVFV 459

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK---RVIQ 372
                ++ +  Q                      IA T+  M+       + +    R IQ
Sbjct: 460  IPKTAETDINQR--------------RIAEGNLIAKTLKEMLDNQIPVFDKQTQQLRPIQ 505

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              DI +L R  +                +I +  +    L +    KD  +L +F+    
Sbjct: 506  PGDIAILTRTWEPLDSYGEALAA----AQIPLAPSGGGNLLETQEAKDAWSLLKFLADPG 561

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICT----QRHETETVYEYIQKFANCGISKFQHVIKYI 488
            DD++ V +L+SP F  S+  +F +          T     + Q       ++F   I  +
Sbjct: 562  DDIALVALLRSPFFAISDRLLFNVSRQSQLSHKSTSENISWWQILTTASPAEFAKAIDTL 621

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD-----EFLNFTLRNEQNS 543
              L+   Q   P      I     G    I+        + D     E +   L    + 
Sbjct: 622  KTLLKQRQIEPPSRLL-QIADQLTGYTAIIANLPASNRRLADFSGFRELV-QILEQGTDD 679

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               +   +  L+    T++R      N V +MT+  AKGLE P+V + D         + 
Sbjct: 680  LFGVVRRLKRLKDKAVTVERPPINTSNAVSLMTIFAAKGLEWPMVVVADLSR---PSPNS 736

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                +      + + L    ++  + E  R+LYV +TR+ D ++
Sbjct: 737  SVPVYFDPEYGVAIRCKDDDKDLKDPVLYNWLKYRNQQREEAEALRILYVALTRSRDYIL 796

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            +                   +       +  +  +++ +                     
Sbjct: 797  LTAPQEKG-------NYLDKLYLGLQAANIPITTLEINSDDIIPPVPPSPPPPAINPPLL 849

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
                 +    +    + +    P +             +   G   L      NQ    G
Sbjct: 850  TNAMTSGLFELPVTSLSEYKRCPARFQF----------MYILGHPGLSEEA--NQGMIIG 897

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
             ++H  L+         R   I             +  +  +               +  
Sbjct: 898  QLVHNALEY------DIRD--IDQLGKFAQNGSNEQSLREAIYLAQEFDNTEEFKRFIHP 949

Query: 844  DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
             +  EV    ++      +  +G  D I     + ++ +YKT   +       P  H  Q
Sbjct: 950  KNQREV----ELKLDILGVTFNGVADLI----GDNWVLDYKTDKVM------RPEHHNLQ 995

Query: 904  LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            L  Y K L  S         + Y+   K +      L K
Sbjct: 996  LWAYAKALNCS------EAHIAYLRHKKCYSFSPEILAK 1028


>gi|325130511|gb|EGC53266.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis OX99.30304]
          Length = 670

 Score =  271 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 112/609 (18%), Positives = 202/609 (33%), Gaps = 116/609 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 126 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 186 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +++L  ++RSTA IL + 
Sbjct: 233 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVVKLEQNYRSTARILKIA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 285 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 312

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                 +    A  +   I   I    I  +      Q  D  VL R +    +     R
Sbjct: 313 ---ACQNEQHEADWVVSQI---IKQKLIGGDKT----QYADFAVLYRGKHQARIFEEALR 362

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 +I    +      D   IKD+++  R + +  DD +F+  + +P     +  + 
Sbjct: 363 ----GVRIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVTLG 418

Query: 455 KICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           K+    HE E          E +    N      Q  +         A+     +F   +
Sbjct: 419 KLNAYAHEHECSLYEAAQTEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFINSL 478

Query: 508 LGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           L         ++      G      + + +++  R       ++ EL   +        +
Sbjct: 479 LEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLEGK 538

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + V + T+H AKGLE P VFLV     V  H                       
Sbjct: 539 D-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN---------------------- 575

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                          +++   EE  RL+YVG+TRA  QL +        +          
Sbjct: 576 -------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEPSR 622

Query: 684 MVYDSFHND 692
            + +    D
Sbjct: 623 FIDEMPQED 631


>gi|254252587|ref|ZP_04945905.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
 gi|124895196|gb|EAY69076.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
          Length = 786

 Score =  271 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 122/810 (15%), Positives = 229/810 (28%), Gaps = 168/810 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W +     S                ++ +   +            
Sbjct: 28  GAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTNKAAREMMARLSAMMPIDTRGMWIGT 87

Query: 66  FSLLS----SFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIK---------I 110
           F  L              PQ    + T +       L + L    +++            
Sbjct: 88  FHGLCNRMLRAHYRDAGLPQTFQILDTADQLSAIKRLMKTLNVDDEKYPPKNVQYFINNA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++        ++         L   Y++  ++  V+DF +L++   +LL      A +R
Sbjct: 148 KEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F 
Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKMLAG----------GQNAIFAVGDDDQSIYAFR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  
Sbjct: 255 GANVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLR 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + S+ +  A  I 
Sbjct: 307 TD---------AGHGEPVRVY--------------------------EASTDAQEAGWIV 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I ++I T           +   +I VL R    +  I            I        
Sbjct: 332 EEIRSLINTG----------LSRSEIAVLYRSNAQSRAIEHTL----MTSGIPYRVYGGL 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   
Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYGCSMAAA 437

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDV 528
           I        +        I ++    Q  S  +    ++ A      +   R G + ++ 
Sbjct: 438 IPYVTGKAGTSLGAFANLIAKMRAETQQMSLPETVEYVVRASGLADFYQGEREGQDRLEN 497

Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549
           L E +N            L                                         
Sbjct: 498 LQELVNAATAFVSEEGYGLDTPARSIPLRAGAIAAPELGVAADDASADVLAPASLDDPAQ 557

Query: 550 -------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                  L   L             A  + V++MTVH AKGLE   VF+      +F H+
Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHE 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                    L+    EE  RL+YV +TRA ++
Sbjct: 618 NSV----------------------------------LESDGLEEERRLMYVAITRAKER 643

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +    +     ++          +   +  +    K+                     
Sbjct: 644 LYLSFAQSRMLHGQTRYNVRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFA 703

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            P    E I        +P         D 
Sbjct: 704 RPGAGREQIVDAAVSAPLPAFANQQRAADA 733


>gi|254491825|ref|ZP_05105004.1| exodeoxyribonuclease V, beta subunit [Methylophaga thiooxidans
            DMS010]
 gi|224463303|gb|EEF79573.1| exodeoxyribonuclease V, beta subunit [Methylophaga thiooxydans
            DMS010]
          Length = 1164

 Score =  271 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 134/877 (15%), Positives = 269/877 (30%), Gaps = 125/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
             + F++   + N  +        + LA YL     + K+K  +  F+DL++N    L   
Sbjct: 287  AERFLQSHQQLNQCRDIALQQLRMQLANYLRQELPKRKQKLKLQAFDDLLLNLQQAL-HS 345

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +  +I Q+    LIDE QDT  IQ++  R++  D             +F VGD K
Sbjct: 346  EQGDVLVAQIRQQFQAALIDEFQDTDPIQYDCFRTVFADSGSP---------VFFVGDPK 396

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IYSF GA+    L  K+ +Q+             L  ++RS   ++  V+ +F   E 
Sbjct: 397  QAIYSFRGADIFTYLDAKQASQREFN----------LDTNWRSHPLLVGAVNTLFEQVE- 445

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             +    D       +++R             +S+                 ++ +    +
Sbjct: 446  -KPFIYDDIPFYPVKAARPDTP------ALTLSKQALPPLEFVWVADDGDKAINKGDMLT 498

Query: 344  ILARRIAYTISNMIGTDTIFS------NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
              A   A  I++++   +          G  R +   DI VLVR       I    R   
Sbjct: 499  TAANSTASQIADLMQQSSQGEVTLTDKEGDSRALNGGDIAVLVRSHSQATAIQQALR--- 555

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                I+ V   R  +        L  +   +    ++      L +P+F  +  DI+++ 
Sbjct: 556  -QRGINSVQQSRDNVFKSEQAVMLEQVLLAVAKPGNNSLIATALATPIFAKTALDIYQL- 613

Query: 458  TQRHETETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                + ++++             +Q    I     L+         D    IL    G +
Sbjct: 614  ---QQDDSLWLEQTDLFQSLHDSWQQDGFIVMFRRLMEQL------DIQRRILQQSDGER 664

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-------QYPPTIKRAHSAN 568
            Q            L               S+++ +++ L              +    ++
Sbjct: 665  QLT---------NLMHLAELVQAYASRRNSTIEAILTWLAGQRQASSAAQDMAQIRLESD 715

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
               V+++T+HT+KGLE P+VF      Q    +  + M       +   +    P     
Sbjct: 716  EQLVKVITIHTSKGLEYPIVFCPFLWHQGKPKQKPELMFFHRDETNQACVAFGEPG---- 771

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV--- 685
                S+     +  ++ E  RLLYV +TRA ++ +I   +  + E  +     +  +   
Sbjct: 772  ---FSEAEPIAEAESRAEDLRLLYVALTRARERCVIIWGAAKNCEDTAMFGLLHRDLDTL 828

Query: 686  ---YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                      E   +      +                   L   E   +++   +I   
Sbjct: 829  NPAQMHSDLAELSAEHPKFIRLQTVNEEVENAPVKPATEVALSAREFKGRILPPWQISSF 888

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTN--LESLLSDNQTFNRGLIIHKLLQVIFTLPE-H 799
                  + + +P     S +                 +  N G  +H L +         
Sbjct: 889  SGLTRGHHVEQPDYDADSVLSEWQTPVETRHDRFGFPKGANAGTCLHSLFEHWDFQTTGD 948

Query: 800  KRKNFITSYCTKNAKLWP-----AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
            + +  I    ++                +++ S         +          E++    
Sbjct: 949  EWQQLIQKTLSQYGIDTDWTDVVEHWLPSVVSSPLSTESALTLNCISQDKRLDEMAFYFP 1008

Query: 855  -----------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                                         +N       + G ID I   +   +I +YK+
Sbjct: 1009 VSQLKAQKLKTTLTGFVTEMPVLKTVLNQLNFNDVTGFMKGFIDLIFEFEGRFYIADYKS 1068

Query: 886  HHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            +    +         +   + + +  Q  IY   L  
Sbjct: 1069 NWLGDKAEDYDKVALDEAMVTHGYPLQYLIYSLALHR 1105


>gi|313673050|ref|YP_004051161.1| ATP-dependent DNA helicase pcra [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939806|gb|ADR18998.1| ATP-dependent DNA helicase PcrA [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 677

 Score =  271 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 103/575 (17%), Positives = 189/575 (32%), Gaps = 116/575 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++  KK  V+DF+D++     LLK+      I+Y   Q   ++L+DE QDT+ I
Sbjct: 169 EIFRTYQDTLKKMAVVDFDDMLSLVVRLLKRNPD---IKYFYRQLFRYLLVDEFQDTNAI 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E + +L +              + AVGD+ QSIY + GAE K +L  +          
Sbjct: 226 QMEFLTNLVD----------KDGFITAVGDDDQSIYGWRGAEIKNILNFENYFPN----- 270

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RS   IL   +++    +  +G        I+         G V + 
Sbjct: 271 ---ARIIKLVDNYRSGFSILDTANRLICNNKYRKGKDLKPYKNIK---------GDVFVH 318

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  +                          A  ++  IS ++             +
Sbjct: 319 RFENEMEE--------------------------ASFVSNKISELLRN----------NV 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I +L R    +           N   I               IKD+++  R   + 
Sbjct: 343 PPDEIAILYRANAQSRNFEVEL----NKKGIPFKVMGSVGFYGRKEIKDILSYLRLFSNP 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            D  SF   +K P     +  I KI     +    ++  I++F++   +K +  +     
Sbjct: 399 YDIQSFKRAVKIPHRGIGDATIDKISQFAINNGVDIWTAIKEFSDGLTAKAKKSLDDFLN 458

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFG----NEVIDVLDEFLNFTLRNEQNSYSS 546
           + +  ++ S  +    I+                   + ++ ++E +N   + E+    +
Sbjct: 459 IFNNFEYLSVSEMIRRIVEEVDYETFLSQYEDQFEVEKRMENVNELVNAAAQQEEQGELT 518

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L +    L                 V++MT+H+AKGLE   VFL      VF      + 
Sbjct: 519 LSDF---LATTTLQTSIDEDT-SGFVKLMTIHSAKGLEFDTVFLTGLEEGVFPLYRAMEN 574

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                                     RL YVG+TR+ ++L I  
Sbjct: 575 EWEMEEE----------------------------------RRLCYVGITRSKERLYITH 600

Query: 667 HSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                     +      + D +   F  D    ++
Sbjct: 601 VDRRLFYGKAQFLKPSPFIDEIKSVFSRDHTYGRV 635


>gi|328950824|ref|YP_004368159.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
 gi|328451148|gb|AEB12049.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
          Length = 716

 Score =  271 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 112/721 (15%), Positives = 205/721 (28%), Gaps = 128/721 (17%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P      VS  +      +      I      L+        +++ 
Sbjct: 63  AAGEMKERLARMVGPAARELWVSTFHSAALRILRVYGEYI-----GLKPGFVVYDEDDQL 117

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           +LL           +         + +  + +++K               +         
Sbjct: 118 ALLKEVLGGLGLETR--------PQYARGVIDRIKNRMWSVDAFLREAEDWVGGLPKEQM 169

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   YE   +    +DF DL++    L +       + +++ Q    I +DE Q
Sbjct: 170 ----AAVYQAYEARMRALGAVDFNDLLLKVIGLFEAHPE---VLHRVQQRARFIHVDEYQ 222

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ + R L            + R L  VGD  QSIY F  A+   +L  ++    
Sbjct: 223 DTNPAQYRLTRLLAG----------AERNLMVVGDPDQSIYGFRNADIHNILNFEKDYP- 271

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +  L  ++RST  IL V + V          +                  
Sbjct: 272 -------DARVYRLEENYRSTEAILRVANAVIEKNALRLEKTLRPVR------------- 311

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                      D   +       A  +A  +  + G        
Sbjct: 312 ---------------SGGDPVFLYRAPDHREE-------AAFVAREVQRLKGRGR----- 344

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  +I VL R    + ++    R       + V         +   +KD++A  R
Sbjct: 345 -----RLDEIAVLYRTNAQSRVLEEAFR----RQNLGVRIVGGVGFYERREVKDVLAYAR 395

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-----ETVYEYIQKFANCGISKF 481
             ++  DDL+   +L  P     +  + K+            E +    +  A       
Sbjct: 396 AAVNPADDLAVKRVLNVPARGIGQTSLAKLSQLAETARVSFFEALRRAGEVLARPQAQAV 455

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNE 540
           Q  +  I  L + A    P  F  L+L               E   + L+E L      E
Sbjct: 456 QRFVALIEGLANAAYDTGPDAFLRLVLAETGYADMLRREPDGEARLENLEELLRAAREWE 515

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    ++ + + E+       +         V +MT+H AKGLE PVVF+V     +  H
Sbjct: 516 EQHAGTIADFLDEVALTARAEEPEGEVPAEAVTLMTLHNAKGLEFPVVFIVGVEEGLLPH 575

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                      +    EE  RL YVG+TRA +
Sbjct: 576 RSST----------------------------------ARVEDLEEERRLFYVGITRAQE 601

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L +          +         + D      +             E +A   +     
Sbjct: 602 RLYLTLSEERETYGRREAVRASRFLEDIPEAFLQPLSPFGEPLGAGREPVAVRPTRRSSA 661

Query: 721 N 721
            
Sbjct: 662 A 662


>gi|91977833|ref|YP_570492.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91684289|gb|ABE40591.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           BisB5]
          Length = 847

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 109/695 (15%), Positives = 204/695 (29%), Gaps = 144/695 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+E  K     DF DL++    L ++      +  +       IL+DE QDT++ Q
Sbjct: 204 LYAAYQERLKVLNAADFGDLLLENIRLFREHPD---VLRQYQGRFKFILVDEYQDTNVAQ 260

Query: 193 WEVIRSLTE----------------------------------DFFVGKNTHSSPRTLFA 218
           +  +R L++                                  D   G    ++P+ +  
Sbjct: 261 YLWLRLLSQAPSQSSLPGSTRQSITSREDGSPGLDASRRPGDDDKASGGVQTAAPKNICC 320

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD+ QSIY + GAE   +LR                 +I L  ++RST  IL     + 
Sbjct: 321 VGDDDQSIYGWRGAEVDNILRFDHDFP--------GAKVIRLERNYRSTGHILAAASHLI 372

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +  E   G +                                  + +  + T  +DS  +
Sbjct: 373 AHNEGRLGKTL----------------------------RTEDVDGEMVTVTGAWDSEEE 404

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  AR I   I  +               +  +I +LVR              L  
Sbjct: 405 -------ARGIGEEIEQLQRQGH----------KLNEIAILVRASFQMREFEDRFVTL-- 445

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457
              +           +   I+D +A  R I S  DDL+F  ++  P     +  +  +  
Sbjct: 446 --GLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNVPKRGLGDATVQMLHD 503

Query: 458 TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
             R     ++E  +      +      S  + +I+            S  +   ++L   
Sbjct: 504 HARKRKMPLFEAARLVIDTDEMKPKARSSLRGLIENFERWQVQRNALSHTELAEIVLDES 563

Query: 512 KGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
              + +      +     + L E +      E         L   LE     + R  +A+
Sbjct: 564 GYTEMWQKDRSADAAGRLENLKELVRSMEEFEN--------LQGFLEHISLVMDRDGAAD 615

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V +MT+H+AKGLE   VFL      +F H+                           
Sbjct: 616 EDAVSVMTLHSAKGLEFETVFLPGWEEGLFPHQR-------------------------- 649

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                  +    ++  EE  RL +VG+TRA  +  +   +N       N       + + 
Sbjct: 650 ------ALDDQGRAGLEEERRLAHVGITRARRRAKLYFATNRRIHGTWNTTIPSRFLDEL 703

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
              +  + + K  +              +             ++   ++       S   
Sbjct: 704 PQANVEITESKGGSGWGGMSGYGPSRFDNVESFGSSYSTPGWQRAQAQRGKNGGSRSGGG 763

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
                    +        +    ++  +    + G
Sbjct: 764 GFSESSSPFSDRGASPGARRAPFTIEGELVAKSTG 798


>gi|297622053|ref|YP_003710190.1| DNA helicase [Waddlia chondrophila WSU 86-1044]
 gi|297377354|gb|ADI39184.1| DNA helicase [Waddlia chondrophila WSU 86-1044]
          Length = 712

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 107/549 (19%), Positives = 175/549 (31%), Gaps = 117/549 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E  K+   LDF+DL+     L ++      +        +H+LIDE QDT+  Q
Sbjct: 168 VYRKYQERLKEYNALDFDDLLFLVVKLFRE---CPEVLKGYQDRWSHLLIDEYQDTNHAQ 224

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E++  L E            + L  VGD  QSIYS+ GA  + +L  +           
Sbjct: 225 YEIVCKLVE----------RTKNLCVVGDPDQSIYSWRGANIQNILNFENDF-------- 266

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RS A+IL   + +    +     +                     LW 
Sbjct: 267 AGAKVVRLEQNYRSRANILDAANHLIGFNQQRFEKN---------------------LWS 305

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            +      +                   S    ++ +A TI               + I 
Sbjct: 306 ALGPGEKIKH--------------YTGDSDRNESQFVADTIRYFHEE---------KGIP 342

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +++++  R    +              +I  V            IKD++A  R   S  
Sbjct: 343 YQEMVIFYRTNFQSRAFEDRL----LSSRIPYVIVGGISFYQRKEIKDVLAFLRMTYSDS 398

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ---------KFANCGISKFQ 482
           D +SF   +  P        I KI      E  T+ EY Q         +         +
Sbjct: 399 DFISFQRTINLPRRGLGNATIEKIRLGATQEGMTILEYCQALVDGGVSLRMTTKQKEGLE 458

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNE 540
             +  I +L  I   CS  +     +                ++    LDE     +  E
Sbjct: 459 GYLSMIRKLKRIYAECSLKELVIAAVEETGYLNHLSEDPETVDDRKANLDELRTKAMEWE 518

Query: 541 QN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q    + L + + EL       +       + V +MT+H  KGLE  +VFLV     +F 
Sbjct: 519 QERDSAELADFLEELSLKSSLDEADA-GLVDRVNLMTIHNGKGLEYTLVFLVGMEEDLFP 577

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H + +                                    +   EE  RL YVGMTRA 
Sbjct: 578 HANSRGS----------------------------------QEALEEERRLCYVGMTRAK 603

Query: 660 DQLIICKHS 668
           + L I    
Sbjct: 604 EYLYITDAR 612


>gi|314924241|gb|EFS88072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL001PA1]
          Length = 810

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 100/633 (15%), Positives = 193/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +   VLDF+DLI+ T  +L+K      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANVLDFDDLIMYTVTVLRKFPE---VRERYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDGPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDSLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  +   I + +      +  + IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDGHIAMVEQGKRADEIASSILKESGYITELENSKDPQDETRLENLIELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +      
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPERLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|325923795|ref|ZP_08185410.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865]
 gi|325545728|gb|EGD16967.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865]
          Length = 723

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 97/575 (16%), Positives = 190/575 (33%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 149 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 205

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 206 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------TGHVFVVGDDDQAIYGWRGA 255

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 256 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 302

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR +   
Sbjct: 303 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 332

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 333 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISEQLPYRVYGGMRF 378

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 379 FERAEIKDALAYLRLLSNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 438

Query: 472 KFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                     +        +  + +L          +    +L     R+ +        
Sbjct: 439 LCTQENTLAARARNALATFLSLVGQLHAETGDMELAERIDHVLMRSGLREHWAKESRSGL 498

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    V++MT
Sbjct: 499 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 558

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 559 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 584

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 585 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 619


>gi|314964915|gb|EFT09014.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA2]
 gi|315103904|gb|EFT75880.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA2]
 gi|327325604|gb|EGE67403.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL103PA1]
          Length = 810

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 100/633 (15%), Positives = 193/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +   VLDF+DLI+ T  +L+K      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANVLDFDDLIMYTVTVLRKFPE---VRERYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDGPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDSLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  +   I + +      +  + IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDGHIAMVEQGKRADEIASSILKESGYITELENSKDPQDETRLENLIELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +      
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPERLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|83814136|ref|YP_445923.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
 gi|83755530|gb|ABC43643.1| probable ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
          Length = 1114

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 151/995 (15%), Positives = 292/995 (29%), Gaps = 128/995 (12%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQ--------VSDINKYVSLSMET--------------- 41
             GL   E  +  ++ L   P           V D+ +  +                    
Sbjct: 156  LGLEP-EDLDAYFERLCEHPELDPYVNAPDTVPDLTQAAAAVRAELDAWQARRPDALPEG 214

Query: 42   --GNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
                     +A+ L   +  +   +R  LL   F         ++  +       D  + 
Sbjct: 215  RDDAMQAFDRAEKLIAQTGVETPAQRAELLE-LFAGVADEESADVTLKCWRGPHTDAYDW 273

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLA-----SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
             +  +DE +    R       +   A      +   +     +   ++    L F DL+ 
Sbjct: 274  ARTLRDEHLPALVRDVVQPALRRWRAYVHEEVVAFVRPAVERFASLRQAEGRLTFHDLLA 333

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF---FVGKNTHS 211
             T DLL+       +R  I +    +L+DE QDT  +Q E++  LT          +   
Sbjct: 334  CTRDLLRDHPG---LRTTIQERHPRLLVDEFQDTDPLQAELLFYLTSRNPTETTWTDCRP 390

Query: 212  SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
             P +LF VGD+KQSIY F  A+ +         +            + L  +FRS   I 
Sbjct: 391  LPGSLFIVGDDKQSIYRFRRADMEVFEAVGERIE------DTGGEAVMLTKNFRSLDVIC 444

Query: 272  TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               D  F    +   L +   T       R                 +   +  +     
Sbjct: 445  DWCDAAFGALFDDADLMDRQATYTPFDPQRT---------------TERDVDGVRRINLD 489

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI------QAKDILVLVRKRKD 385
                      A+  A RIA  I              +            D L+L R +  
Sbjct: 490  KVRGNWGTDIAAQDAGRIARFIQGARDGGRSGRGADRHGALFAGGADYSDFLILTRTKSR 549

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              +             I         L +   +K L+ L    L  +D+++ V  LK PL
Sbjct: 550  LSVYAEALAE----RGIPYTVTGSEDLGEAAELKALVDLLTCALRPDDEVACVAYLKGPL 605

Query: 446  FNFSEDDIFKICTQRHETETVYE-----YIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
               S+DD+++      E   ++E      ++   +    +F+    ++           P
Sbjct: 606  VGASDDDLYRFSRAGGEFGRMHEPVPASVLEALPHETAQRFEEAFGHLRAARRRLHEQRP 665

Query: 501  HDFFTLILGAKKGRQQFI----SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                  ++              +  G+     +   + +            + L      
Sbjct: 666  GVAIEQLIDDLGLLAGAAHPPDAAEGSLRAGRVLRTITYVQDLAAQGLGWAEVLDELQRV 725

Query: 557  YPPTIKRA----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                 +       +   + VR+M VH AKGLE+PVVFL D  S+       + +      
Sbjct: 726  VDGEEEVDGMTLETGGDDAVRVMNVHQAKGLEAPVVFLADPYSRSGGPSVRRHLRREAGE 785

Query: 613  NDDP--------GIPIWIPQSKSRN--NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
               P              P    R          +  ++    E  RLLYV  TRA + L
Sbjct: 786  LVAPIVQGSGYRERVTHPPLGWERPVDGRDESFRESEERHEAAEERRLLYVAATRAQNLL 845

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            ++  +    ++                        +   +        A   S       
Sbjct: 846  VVSTYPEKPDDGP---------------WAPLYPHLDAADVPELGRPDAEPSSDRPEAPA 890

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ-TFN 781
            P   ++   +    +              + P     S  D    + + S L+       
Sbjct: 891  PALTDQRAGRDAQLEAQ------------SRPSYRTESVTDGDRASPVRSSLASEGYGEA 938

Query: 782  RGLIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
             G  IH+LL+             ++   S   +          +     + R L++ +  
Sbjct: 939  FGSAIHQLLEQCVRTGRPTPWTDESVAASVLERTGAEDTPDAVERATTMVQRFLDSRVWG 998

Query: 839  TAMSCD-SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                 D  Y+E  ++  +   +  ++  G ID    +     + ++KT     +  E + 
Sbjct: 999  RVQGADRVYAEYPIAHAVR-RETPVVRRGVIDLAWRADGRWTLVDHKTDRVQGRPPETLS 1057

Query: 898  --YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
              + ++ QL  Y +       N+ +  + +++++ 
Sbjct: 1058 PDHAYVQQLQAYARAWAAVV-NEPVAEVGLWLADA 1091


>gi|83720350|ref|YP_443147.1| DNA helicase II [Burkholderia thailandensis E264]
 gi|167582159|ref|ZP_02375033.1| DNA helicase II [Burkholderia thailandensis TXDOH]
 gi|167620316|ref|ZP_02388947.1| DNA helicase II [Burkholderia thailandensis Bt4]
 gi|257139377|ref|ZP_05587639.1| DNA helicase II [Burkholderia thailandensis E264]
 gi|83654175|gb|ABC38238.1| DNA helicase II [Burkholderia thailandensis E264]
          Length = 787

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 112/736 (15%), Positives = 220/736 (29%), Gaps = 161/736 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHFRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T +       L   Y++  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPDKVDATDSFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFENEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++ +           +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNSG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
             A    S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVAGKAGSSLASFANLIAKMRAETAQMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFAAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------ALESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++           A          
Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFARP 705

Query: 722 TPLEREETIKQLMDEQ 737
               RE  +   +   
Sbjct: 706 GGGARESVVDAAVSAP 721


>gi|194098703|ref|YP_002001765.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999007|ref|ZP_04718931.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|240080641|ref|ZP_04725184.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19]
 gi|240123598|ref|ZP_04736554.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332]
 gi|193933993|gb|ACF29817.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
           NCCP11945]
 gi|317164300|gb|ADV07841.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 671

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNVWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           +  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------RYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNAYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGNYRAKAEIDEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + E +++  R  +    ++ EL   +       
Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVGELVSWFARKGERDGKNVIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|218696416|ref|YP_002404083.1| exonuclease V subunit beta [Escherichia coli 55989]
 gi|218353148|emb|CAU99002.1| exonuclease V (RecBCD complex), beta subunit [Escherichia coli 55989]
          Length = 1180

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 124/877 (14%), Positives = 274/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   + F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGEVGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGEMQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAAGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|240014083|ref|ZP_04720996.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI18]
 gi|240121644|ref|ZP_04734606.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID24-1]
          Length = 671

 Score =  271 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 205/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +++       + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNVREQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           +  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------RYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNAYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGNYRAKAEIDEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + E +++  R  +    ++ EL   +       
Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVGELVSWFARKGERDGKNVIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|325675756|ref|ZP_08155440.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
 gi|325553727|gb|EGD23405.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
          Length = 1125

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 141/1077 (13%), Positives = 273/1077 (25%), Gaps = 228/1077 (21%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
              +  + +      +LW L Y  VS  +  +       + T    A + Q A       +
Sbjct: 139  LPIEPSATLLS-ETELWQLAYRVVSAWDDDLDTDRNPASITESVLALSGQLAEHLVEPAD 197

Query: 65   RFSL---LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                   L     T    P      ++    S  L + L+        +           
Sbjct: 198  LREAHTELDKLIHTLPAGP------KQRGGPSKTLLDLLEVQHQRLDLL----------- 240

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                       L     +  ++   LDF   +     +  +      +          +L
Sbjct: 241  ----------PLVQRLADTLRREGALDFGSQMSLAARVASEHPE---VGRSERARFRVVL 287

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   Q  ++ SL            +   L AVGD  QSIY + GA    + R  
Sbjct: 288  LDEYQDTGHAQRVLLSSLFG------GGEDAGLALTAVGDPMQSIYGWRGASAANLPRFA 341

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                      G     +EL  S+R+  + L + + +     +            + R+  
Sbjct: 342  TDFP---LADGTPAPKLELLTSWRNPPEALELANMISEPLRDRG------VEVSKLRARP 392

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V+L      + +                             +A  I+       
Sbjct: 393  AAVPGDVRLALLDTVETER--------------------------AWVADRIAEQYEAAR 426

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            +         +     VLVR+  D   I    R       ++V       L     + D+
Sbjct: 427  VD------GAKPPTAAVLVRRNADAAPIAEELRA----RGLAVEVVGLGGLLHTPEVADV 476

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            +A+ R +       + V +L    +     DI  +  +  E     ++    A    +  
Sbjct: 477  VAMLRLVADPMAGSAAVRVLTGARWQIGAADIRALWKRAGELGIRSDHGATGAVTDAAAL 536

Query: 482  QHVI---------------------------------------KYIHELIHIAQFCSPHD 502
               +                                         +  L          +
Sbjct: 537  DDALGSALPGEQSEQAGLADALADPGPAHRYSEAGYVRICAVAAELASLRERLGQ-PLTE 595

Query: 503  FFTLILGAKKGRQQFISRF-----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                +        +  +R      G    + LD F +        + ++L  L+S L   
Sbjct: 596  LVAEVERVIGIGIEAQARTRQSEVGGAGREHLDAFADVVSGYANRTSATLTGLLSFLAAA 655

Query: 558  PPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI----- 608
                            + V+++TVH+AKGLE  VV +    + VF         +     
Sbjct: 656  EHVENGLAPGEVEVAPDRVQVLTVHSAKGLEWEVVAVPHLTAGVFPSSQASATWLGSVAE 715

Query: 609  MPSLNDDPGIPI-------------WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +P                        +   K   + +      L     +E  RL YV +
Sbjct: 716  LPPTLRGDRAYPGESADGVPVLDLENLYHRKDLEDAIKSHKDALSTRRLDEDRRLFYVAL 775

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI-------KLTNSINKDE 708
            TR    L +  H    +       + + +  +   +    +++          +   ++ 
Sbjct: 776  TRTERALFVSGHHWAESGADPKGPSPFLLELEELVSTWEGERLGAIDVWAPAPDDGAENP 835

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE--------------- 753
              A   S   P +    R   +++  +  +           +                  
Sbjct: 836  LTATPRSALWPRDPLGRRRADVERGAELVRGALAGLGKAAPEPEAADGDPDNWAADVDAL 895

Query: 754  ----------------PYILNPSTI--------DTKGKTNLESLLSDNQTFNRGLIIHKL 789
                            P  L+ S +            +         N    RG   H  
Sbjct: 896  LAERRERGHGGTDVEMPAQLSVSQLVDLAADPDALAARLRRPLPFPPNPLARRGTAFHAW 955

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
            ++  F           T     +  L  A +      +   LL++  + +  +    S V
Sbjct: 956  VEQRFG---------ATRLLDFDE-LPGAADTGVGTETELALLQDAFLRSPWAD--RSPV 1003

Query: 850  SVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
             V           ++ GRID +         + ++KT        E      + QL+ Y 
Sbjct: 1004 EVEVPFETSVAGTVLRGRIDAVFADADGGWTVIDWKTGAEPSAANERAV---VMQLAAYR 1060

Query: 909  KILKDSY--------------PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                +                P   +     YV   +             A + T  
Sbjct: 1061 IAWAELMAARQSRLTGRPVEPPLDKVRAAFHYVRTGRTIAPEDLPDADRLARLITTA 1117


>gi|227498096|ref|ZP_03928269.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
 gi|226832489|gb|EEH64872.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
          Length = 972

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 107/663 (16%), Positives = 194/663 (29%), Gaps = 151/663 (22%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+         +    L +  + +     K    +    +  DLK +L         
Sbjct: 230 AAGLRSTFSIYDSADS-QRLITLIVKELGIDSKRFTPKTFANRISDLKNEL------ITP 282

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            +               +     +   Y         LDF+DLI+ T  LL+ +     +
Sbjct: 283 AQYAERALTSNPLERHLV----EVYRAYAARLVAANALDFDDLIMRTVQLLQTKPA---V 335

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-FVGKNTHSSPRTLFAVGDEKQSIYS 228
                +   HIL+DE QDT+  Q+ ++R LT      G+ +      L  VGD  QSIY+
Sbjct: 336 AEMYRRRFRHILVDEYQDTNHAQYVLVRELTGGPGTSGEGSAVPAAELTVVGDSDQSIYA 395

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F GA  + +   ++               I L  ++RST +IL   + V S     +  +
Sbjct: 396 FRGATIRNIEEFEQDYPA--------ARTILLEQNYRSTQNILDAANAVISRNSGRRKKN 447

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                         +S        + +         S    AR 
Sbjct: 448 LF---------------------------TESGAGTPVIGYVA--------DSEHDEARW 472

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I+  I  +   +          ++ +D+ V  R    +  +                   
Sbjct: 473 ISSEIDRLADEE---------GVRPRDVAVFYRTNAQSRALEEAF----LRSGQPYKVVG 519

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------ 462
                +   IKD +A  R + + +DD++   +L  P     +     +            
Sbjct: 520 GTRFYERREIKDAIAYLRAVDNPDDDVNIRRILNVPKRGLGDKAEAVLAEHAARYGVSFG 579

Query: 463 ------------------------TETVYEYIQKFANCGISKFQHVIKYIHELI-HIAQF 497
                                     T    ++  A    ++     + +  L   +A  
Sbjct: 580 TAVADAAGALRPLEQGEGAGDLDAGGTEAPAVEGLATRARTQVTKFHELLTGLRHQLAAG 639

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISE 553
               D    +L A     +  +    +    ++ L E  +     +  +  + L + +  
Sbjct: 640 DGVADLLDSVLDASGYLAELRASDDPQDATRVENLAELHSVAADFQAANPDAVLADFLER 699

Query: 554 LEQYPPTIKRAHSAN-----------HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           +       +   SA+             +V +MTVHTAKGLE PVVF+       F H  
Sbjct: 700 VSLVADADQLPDSADLGDEAARKAAEDGQVTLMTVHTAKGLEFPVVFVTGMEDGTFPHSR 759

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                  +   E  RL YV +TRA ++L
Sbjct: 760 SL----------------------------------ADDAELAEERRLAYVALTRARERL 785

Query: 663 IIC 665
            + 
Sbjct: 786 YVT 788


>gi|294625145|ref|ZP_06703789.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600564|gb|EFF44657.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 728

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 99/575 (17%), Positives = 191/575 (33%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 154 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 261 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 307

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR +   
Sbjct: 308 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYVVER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 338 ARQWVRDGG----------SYGEVAVLYRSNARSRALEEAL----ISEQLPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 384 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARASALSLWEAAM 443

Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  I +L          +    +L     R+ +        
Sbjct: 444 LCTQQNTLAARARNALATFLSLIGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGL 503

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    V++MT
Sbjct: 504 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 563

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 564 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 589

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 590 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 624


>gi|152998439|ref|YP_001343274.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
 gi|150839363|gb|ABR73339.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
          Length = 737

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 118/731 (16%), Positives = 231/731 (31%), Gaps = 147/731 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +  +++S  +             +  + + L            
Sbjct: 30  GAGSGKTRVLVHRIAWLMHAYELSPYSLMAVTFTNKAAREMQGRIEQLVGVPPQGMWVGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + +     + +     D  ++L+  +    ++             
Sbjct: 90  FHGLAHRLL------RAHWRDAGLKENFQIMDSDDQLRLIKRIMRELNIDDTRWPPKQVS 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +  S        + L  HYEEA ++  +LDF +L++  ++L+   
Sbjct: 144 WFINAQKDEGRRAAHVPDSHDPFSKGMRELYYHYEEACERGGLLDFGELLLRAHELMLST 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                +     +   H+L+DE QDT+ IQ+  +R +            S  T+ AVGD+ 
Sbjct: 204 PA---LLRHYQERFRHVLVDEFQDTNTIQYAWLRIMVG----------SQGTITAVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + +    +          +  S I L  ++RST  IL   + +    ++
Sbjct: 251 QSIYGWRGAKIENIQNFTKDF--------KDVSTIRLEQNYRSTGHILNAANGLIKHNDD 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G                      +LW                S  + F+   +     
Sbjct: 303 RLGK---------------------ELW-------TDSGEGDPISLYAGFNEQDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR I   I       T             D+ +L R    + +I           +I+
Sbjct: 330 --ARFIIGIIKQWRDKGTSL----------TDMAILYRSNAQSRVIEECL----VREQIA 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     D L IK+ +A  R  L   DD +   ++  P     E  I  +    R  
Sbjct: 374 YRIYGGHRFYDRLEIKNALAYARLALDPNDDGAMERVINVPPRGIGERSIGTLREIARDN 433

Query: 463 TETVYEYIQK------FANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGR 514
             ++++  Q+            +  +  +  I  L         + +D F  I+      
Sbjct: 434 GCSMWQAAQEVVRQSLMPGRATNAIKAFLHLIEGLSTTVQQPDLNLNDIFEQIIEEAGLI 493

Query: 515 ---QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE--LISELEQYPPTI-KRAHSAN 568
              ++     G   I+ L E +        +         L++ L++             
Sbjct: 494 PFHEKEKGEKGEARIENLKELVGAAGGFSWSDEDEEFSSPLMAFLDKAVLDAGDAQADEY 553

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V++MT+H+AKGLE P+VFL      +F  K   +                       
Sbjct: 554 QDAVQLMTLHSAKGLEFPLVFLTGVEENIFPSKMSFEEPG-------------------- 593

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                            E  RL YVG+TRA ++L I    +       +  +    + + 
Sbjct: 594 --------------RLAEERRLCYVGITRAMEKLYITYAESRRLFGSESFNSPSRFIKEL 639

Query: 689 FHNDERVKKIK 699
                   +++
Sbjct: 640 PPECLEEVRLR 650


>gi|319789207|ref|YP_004150840.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
 gi|317113709|gb|ADU96199.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
          Length = 709

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 91/606 (15%), Positives = 183/606 (30%), Gaps = 116/606 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y    ++   +DF+DL++   +LL + +     R        ++L+DE QDT+ +
Sbjct: 165 QLFELYNRRLRELNAVDFDDLLLYGRELLSREE----WRDYYSNYFRYVLVDEYQDTNAV 220

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q++++++LT               + AVGD+ Q IYS+ GA    +L  +R  +      
Sbjct: 221 QYDIVKALTL----------RKGNICAVGDDDQCIYSWRGANINNILSFERDFKN----- 265

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++R +  IL   + V +     +G                         
Sbjct: 266 ---AKVIKLEQNYRCSKKILEAANAVIANNRERKGKVL---------------------- 300

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  ++        + +  D           A+ +   +  +I             +
Sbjct: 301 -----YTENPEGDDIRLFRASSDVEE--------AQFLVAAVKRLIERG----------V 337

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               I V  R    + +     R       I           +   +KD++A  R  +S 
Sbjct: 338 SPSSIAVFYRTNALSRIFEDALR----RAGIPYQIVGGVRFYERREVKDVIAYLRLAVSP 393

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC-----GISKFQHVIK 486
            D LS + +L +P          K+     E +  +E + + +              +++
Sbjct: 394 SDLLSLLRVLNTPRRGLGPAVEAKVKELFAELKDAFEVLGRLSRELRLEKQRRGVSELLE 453

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNS 543
            +  +    +   P+D    ++      +     +  E     + + E  N      +  
Sbjct: 454 VLERIREKVETLPPYDLVKFVVSTVGYEEFLKEEYPQEWEQRLENVLELGNTLQEFAEKE 513

Query: 544 YSS--LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
             +     L         + +         V +MTVH +KGLE PVVF+      +F H 
Sbjct: 514 GLTGRELLLEFLSSLALSSDQDQLEEGQERVTLMTVHASKGLEFPVVFITALEEGIFPHS 573

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                      EE  RL YV +TRA ++
Sbjct: 574 RSSGSP----------------------------------RELEEERRLFYVAVTRAKER 599

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +             +      + +        +  +             +     PE 
Sbjct: 600 LFLSYAKRRRVFGSYRETKPSRFLSE-IPQHLLCEVRRRQRVAPSGSDPRVKARAPRPEG 658

Query: 722 TPLERE 727
           +    +
Sbjct: 659 SAARPK 664


>gi|59801156|ref|YP_207868.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|240016517|ref|ZP_04723057.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA6140]
 gi|240112994|ref|ZP_04727484.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11]
 gi|240118044|ref|ZP_04732106.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1]
 gi|240125781|ref|ZP_04738667.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128301|ref|ZP_04740962.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|293399023|ref|ZP_06643188.1| ATP-dependent DNA helicase Rep [Neisseria gonorrhoeae F62]
 gi|59718051|gb|AAW89456.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA 1090]
 gi|291610437|gb|EFF39547.1| ATP-dependent DNA helicase Rep [Neisseria gonorrhoeae F62]
          Length = 671

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 205/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +++       + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNVREQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           +  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------RYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 418 LGKLNAYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGNYRAKAEIDEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + E +++  R  +    ++ EL   +       
Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVGELVSWFARKGERDGKNVIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|289446520|ref|ZP_06436264.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289419478|gb|EFD16679.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           CPHL_A]
          Length = 702

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 107/682 (15%), Positives = 189/682 (27%), Gaps = 136/682 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +      +              +            + L         ++   
Sbjct: 79  AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + +          +    
Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L        N    P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +     +                      
Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +  +  +         I           +   I+D++A  R 
Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478
           + +  D +S   +L +P     +     +     +      + +   A            
Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 ++   EL          +    +L     R++  +    +    +D L+E ++ 
Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542

Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581
                           +         L   LE+            H    V +MT+HTAK
Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE PVVF+      +F H                                         
Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALDNPT--------------------------------- 629

Query: 642 STQEEYNRLLYVGMTRASDQLI 663
               E  RL YVG+TRA   ++
Sbjct: 630 -ELSEERRLAYVGITRAPAAVV 650


>gi|296135521|ref|YP_003642763.1| UvrD/REP helicase [Thiomonas intermedia K12]
 gi|295795643|gb|ADG30433.1| UvrD/REP helicase [Thiomonas intermedia K12]
          Length = 781

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 98/598 (16%), Positives = 189/598 (31%), Gaps = 134/598 (22%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               +D+       ++          +   YE    ++ V DF +L++ + ++L+     
Sbjct: 144 INGAKDQGLRPGDVEARDPQSRQLAEIYLAYEAQCTRDGVADFAELMLRSYEILRDN--- 200

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           A IR    Q   HIL+DE QDT+ +Q++ ++ L           +    +FAVGD+ QSI
Sbjct: 201 AAIRSHYRQRFRHILVDEFQDTNRLQYQWLKLLAG------PEDAQGACVFAVGDDDQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+F GA    +   +R  + R         +I+L  ++RS   IL   + + +      G
Sbjct: 255 YAFRGAHAGNMDDYQREFRVR--------HLIKLERNYRSHGHILDSANTLIANNARRLG 306

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                            + ++        + +  D           A
Sbjct: 307 KNL---------------------------RTEAGAGEPVRVFEAPSDYAE--------A 331

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +   I  ++             +   +I VL R    + +I         +  +    
Sbjct: 332 QWLIEEIRQLLREG----------LAHSEIAVLYRANALSRVIEGAL----FNAGLPYRV 377

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  +   +K  +A  R + + +DD +F+ ++  P        + ++    R     
Sbjct: 378 YGGLRFFERAEVKHALAYLRLLDNPQDDTAFLRVVNFPARGIGARTLEQLQDAARLRATP 437

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNE 524
           + E +      G +  Q  +  + ++       S  +    +L A      +   R G E
Sbjct: 438 LSEAVDALGGRGAASLQAFLDLVAQMRFQTAAMSLPELVRHVLEASGLNAHYREEREGQE 497

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQE-------------------------------LISE 553
            ++ L+E +N            LQ                                L + 
Sbjct: 498 RLENLEELVNAAAAFVTQEGFGLQATAQQRQALGAAPDSFAATDGIDPATGETLSPLTAF 557

Query: 554 LEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           L                + +++MTVH AKGLE   VF+      +F H++          
Sbjct: 558 LTHAALEAGDNQAQNGQDAIQMMTVHAAKGLEFDAVFITGLEEGLFPHENALSETDG--- 614

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                           EE  RL+YV +TRA  +L +      
Sbjct: 615 -------------------------------VEEERRLMYVAITRARKRLYLSLAQTR 641


>gi|90019833|ref|YP_525660.1| ATP-dependent DNA helicase Rep [Saccharophagus degradans 2-40]
 gi|89949433|gb|ABD79448.1| ATP-dependent DNA helicase Rep [Saccharophagus degradans 2-40]
          Length = 672

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 96/596 (16%), Positives = 189/596 (31%), Gaps = 123/596 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y +A K    +DF+DLI   + L  +      +  +  Q I ++L+DE QDT+ 
Sbjct: 166 ALVFERYNKALKAYNAVDFDDLIRLPSKLFSEHPE---VLNRWQQRIRYLLVDEYQDTNS 222

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q++V++ L  D            TL  VGD+ QSIY++ GA P+ +   K         
Sbjct: 223 SQYKVVQQLIGD----------RGTLTVVGDDDQSIYAWRGARPENMSLLKVDFP----- 267

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RSTA IL   + + +   +    +                     L
Sbjct: 268 ---SLHVIKLEQNYRSTARILKAANVLIANNPHEFDKT---------------------L 303

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W  +      +                        A R+A  I          +   +R 
Sbjct: 304 WSDLGMGETIRVIKCPT--------------EDAEAERVATEI---------LTQRLRRQ 340

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + KD  VL R      L+    +     ++I    +          IKD+M   R I +
Sbjct: 341 CKFKDFAVLYRGNHQARLMELKLQ----HHQIPYNISGGTSFFARAEIKDIMGYLRLIAN 396

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQH 483
             DD +F+ ++ +P        +  +         +++    +          G+ + + 
Sbjct: 397 PADDNAFLRVVNTPRRQIGTGTLEALGRYSTERDISLWAACDEMGLQALIPKQGLERIRK 456

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTL- 537
              +++ +        P      ++                    +  + ++  +     
Sbjct: 457 FSGWLNSVRSNCHNGDPVQAIREMIDDIDYEGWLHQNASSPKVAEKRFENVNILVESIKN 516

Query: 538 ---RNEQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
              R+E       + + + +          ++      + V++MT+H +KGLE P VFL+
Sbjct: 517 SLERDENEDADGEERINTAISKLLLQDMLERQEEEDETDRVQLMTLHASKGLEFPHVFLL 576

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      +++   EE  RL 
Sbjct: 577 GLEEEILPH-----------------------------------RNSIEEDNIEEERRLA 601

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           YVG+TRA   L +          +    T    + +    D   +          +
Sbjct: 602 YVGITRAQRTLTMTLAGTRKQFGEKQTTTPSRFLDELPPEDVEREGFSEATPEQIE 657


>gi|253583576|ref|ZP_04860774.1| ATP-dependent DNA helicase pcrA [Fusobacterium varium ATCC 27725]
 gi|251834148|gb|EES62711.1| ATP-dependent DNA helicase pcrA [Fusobacterium varium ATCC 27725]
          Length = 725

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 118/599 (19%), Positives = 212/599 (35%), Gaps = 120/599 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K ++ ++ N     +   + K ++E I   +   +   +        +   +   Y    
Sbjct: 125 KELVVKDKNLTEGMVVSLISKLKEEEISADEYEKSENKYNMNA---VVVAEIYRRYNITL 181

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K N  +DF D++INT  LL+  D    I  K+  +  +I++DE QDT+ IQ+++I  +  
Sbjct: 182 KNNNGMDFSDILINTAKLLEIPD----ILNKVQDKFRYIMVDEYQDTNNIQYKIINKIAS 237

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +            L  VGDE QSIY F GA  + +L  ++              +++L 
Sbjct: 238 KY----------GNLCVVGDENQSIYGFRGANIQNILDFEKDYPN--------AEVVKLE 279

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST+ IL   + V S   +A+                        LW         +
Sbjct: 280 ENYRSTSVILDAANAVISNNSSARDKK---------------------LW-------TKK 311

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              ++ +     D   +          +   I  +I        GK +  + +D  +L R
Sbjct: 312 TTGEKITLLQCNDGRQE----------VNTIIEEII-------KGKNQGKKYRDFTILYR 354

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L           + I               IKD++A    I + +D L+   +L
Sbjct: 355 MNAQSRLFEEGF----LRFNIPYKIFGGMQFYQRAEIKDIVAYLAVINNTKDSLNLSRIL 410

Query: 442 KSPLFNFSEDDIFKICTQRH-ETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494
             P     +  + KI         T++E + +               +   K + ELI I
Sbjct: 411 NVPKRKIGDKSLEKINEFASVNGLTLFEALGRAKEIDTLTANMKLVLEEFYKMMTELIEI 470

Query: 495 AQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELI 551
           ++     + F  ++ + K      +        I+ ++E  N     E+     +L+E +
Sbjct: 471 SESEPVSELFDKVIKSIKYFDYLEANYEDSENRINNIEELRNSITEMEKIIETLTLREYL 530

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             +     T         + V++MT+H +KGLE P VFLV T  +VF  K          
Sbjct: 531 ENISLVSATDN--LEEEKDYVKLMTIHNSKGLEFPTVFLVGTEDEVFPGK---------- 578

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                       +    EE  RL YV +TRA D+L I   ++ 
Sbjct: 579 ------------------------KADFEPRELEEERRLCYVAITRAEDKLYISYAASR 613


>gi|319442768|ref|ZP_07991924.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile
           DSM 44702]
          Length = 931

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 107/818 (13%), Positives = 226/818 (27%), Gaps = 182/818 (22%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +   + P+       ++ + SL +           + L         +++  
Sbjct: 171 AAAEMRERVTDLVGPVAERMW--LSTFHSLCVRILRANAQ-LIEGLNTNFTIYDSDDQKR 227

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L++           K    + +     + K +L+   +   + ++  N ++         
Sbjct: 228 LITMVLKDHDCDL-KEFAPRAVLSVISNWKNELQGPAEALKETQEDGNRHREQ------- 279

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +++  +DF+DLI     +L+       +     +   H+L+DE QD
Sbjct: 280 --IALVYRDYQARLRESNAVDFDDLIGEVVWMLQANPA---VADHYRRRFRHVLVDEYQD 334

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++ +L  +             L  VGD  QSIY+F GA  + +   +R     
Sbjct: 335 TNHAQYVLVSTLVGEG-------PDAGELCVVGDADQSIYAFRGATIRNIEEFERDYPH- 386

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +  +  +                      
Sbjct: 387 -------AETILLEQNYRSTQNILSAANAVIARNQGRREKK------------------- 420

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           +          +   +       AR IA TI  ++          
Sbjct: 421 --LW-------TDSGDGPLIGGYVADNEHDE-------ARFIAQTIDQLVDDG------- 457

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI V+ R    + ++  +         +           +   I+D++A  + 
Sbjct: 458 --DATYGDIAVMYRTNNSSRVVEDVL----VRSGLPYKVVGGTRFYERREIRDVVAYLKV 511

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK---------FANCGI 478
           + + ED +    ++ +P     +  I ++       +  +    +          ++ G 
Sbjct: 512 LDNAEDTMGLRRIINTPRRGIGDRAISQVSVHAENMDLSFAGGLRAAAAGEVPGLSSRGR 571

Query: 479 SKFQHVIKYIHELIHIAQFC-------------SPHDFFTLILGAKKGRQQFISRFGNE- 524
           +     ++ +  L                            +L       +       + 
Sbjct: 572 NAIAGFLELMDGLREDLPGHVMEASDGSSLEIPDLGAVIRDVLDRTGYTTELEKSNDPQD 631

Query: 525 --VIDVLDEFLNFTLRNEQN---------------------------------------- 542
              +D L E ++      Q                                         
Sbjct: 632 GSRLDNLHELVSVGHEFSQEAANLAAYEAMPDTAGGTAAQQESGAASDADAAADAVLSEG 691

Query: 543 --SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             +  SLQ  +  +       +         + +MT+HTAKGLE PVVFL       F H
Sbjct: 692 EPAPGSLQAFLERVSLVADADQIPGEE-QELITLMTLHTAKGLEFPVVFLTGWEDGQFPH 750

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                            E  RL YVG+TRA  
Sbjct: 751 QRALGDPT----------------------------------ELSEERRLAYVGITRARQ 776

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L + +    S+            + +         + +         W +     +   
Sbjct: 777 RLYLSRAVTRSSWGTPANNPPSRFLDEIPGELIDWIREE-PTPSWGGGWGSSTSGGYADG 835

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            +                  ++  SP          L+
Sbjct: 836 TSFGGGGFGGGYGGGSGYGSRQSSSPAPRRKAPSSPLS 873


>gi|315093785|gb|EFT65761.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL060PA1]
          Length = 810

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 101/633 (15%), Positives = 192/633 (30%), Gaps = 128/633 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+   +   VLDF+DLI+ T  +L+K      +R +  +   H+L+DE QD
Sbjct: 204 RINGDVYVEYQRRLRAANVLDFDDLIMYTVTVLRKFPE---VRERYRRRFRHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T+  Q++ IR L  D             P  L  VGD  QSIY+F GA  + ++  ++  
Sbjct: 261 TNTAQYQFIRELCGDGPVELDDGARSVDPPELMVVGDSDQSIYAFRGATIRNIIDFEKDF 320

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  ++RST  ILT  + +  +  N    +                
Sbjct: 321 P--------GARTILLEQNYRSTQTILTAANNLIKVNLNRPAKN---------------- 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW         Q +  +           +       A  +A  I  ++       
Sbjct: 357 -----LW-------TDQGDGDKIVGYVADTEHDE-------AAWVARRIDELVDEGRT-- 395

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V  R    +     +         +           +   ++D ++ 
Sbjct: 396 -------SYGQVAVFYRTNAQSRAFEDVF----IRTGLPYRVVGGVRFYERKEVRDAVSY 444

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            R I +  DD+S   +L +P           +         + +E +++       A   
Sbjct: 445 LRAIANPSDDVSLRRILNTPRRGIGARAEAAVEMFATARRISFWEALKRIDEIDSLATRS 504

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTL-ILGAKKGRQQFISRFGNE---VIDVLDEFL 533
           +++ +  +  +   I + +     D     IL       +  +    +    ++ L E +
Sbjct: 505 VNQIRAFVSLMDGHIAMVEQGKRADEIARSILKESGYITELENSKDPQDETRLENLIELV 564

Query: 534 NFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           +                         E +   SL   + ++     + +    ++   V 
Sbjct: 565 SVAQEFVARVHAVDIDEAEQGNVEDLELSGDDSLPAFLEQIALVADSDQVPADSDG-VVT 623

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VF+      VF H                                 
Sbjct: 624 LMTLHTAKGLEFDTVFITGFEDGVFPHMRSL----------------------------- 654

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +   E  RL YVG+TRA  QL + + S  +   ++        + +      
Sbjct: 655 -----ADATELSEERRLAYVGITRARKQLFVSRASVRTMWGQAQYNPPSRFIDEIPERLI 709

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             ++I   +            S           
Sbjct: 710 EWERIGQASVGWSTSASGRSQSARGALRDDTPA 742


>gi|197117725|ref|YP_002138152.1| UvrD superfamily ATP-dependent helicase [Geobacter bemidjiensis
           Bem]
 gi|197087085|gb|ACH38356.1| ATP-dependent helicase, UvrD superfamily [Geobacter bemidjiensis
           Bem]
          Length = 678

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 92/599 (15%), Positives = 193/599 (32%), Gaps = 120/599 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +A  +   Y+ A K    +DF+D+I+ T +LL+   +   +     +   +I++DE QDT
Sbjct: 168 MAGLVYPRYQSALKAFNAIDFDDIIMLTAELLEHHPL---VLKHWQERFRYIMVDEYQDT 224

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ ++  L                L  VGD+ QSIY + GA+   +L  ++      
Sbjct: 225 NSSQYLLVNLLAAGC----------GNLCVVGDDDQSIYGWRGADVGNILDFEKDF---- 270

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               +    I+L  ++RST +IL   + V    +  +                       
Sbjct: 271 ----KGCRTIKLEQNYRSTGNILEAANSVIGNNKVRKAKR-------------------- 306

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW        +             D   +       A  +   I              K
Sbjct: 307 -LW-------TASGEGPLIDLCIVQDDEEE-------ATSVVERIQ---------LERYK 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +        +L R    +       RF      I  V        +   +KD ++  + I
Sbjct: 343 KDAPYSQFAILYRTNAQSRPFEEQLRFE----DIPYVLVGGTQFFERKEVKDSLSYLKVI 398

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKF 481
            +  D+++ + ++  P     +  + +I      +   ++E   +       ++    K 
Sbjct: 399 ANPLDEVALLRIVNFPKRGIGDSTVIRINQWSLEKEIPLFEAFSRVEEIEGISDIIKDKV 458

Query: 482 QHVIK-YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-----EVIDVLDEFLNF 535
           +      +             +    +    K  ++      +       ++ +++ +N 
Sbjct: 459 RAFHHTLLDAAEAFRAEGGLAEKGKALFEKLKIEEEIFRTIDDAKAARRKVENVEQIINS 518

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLV 591
               E+    ++L   I ++                  + V +M++H++KGLE P VFLV
Sbjct: 519 MAAYEERVPEATLGGFIEKVSLMDEDRFSGKDKKEHGKDAVTLMSLHSSKGLEFPFVFLV 578

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  HK                                      +  + +E  RL 
Sbjct: 579 GMEDEILPHK----------------------------------RAIYEDDSIDEERRLC 604

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           YVG+TRA  QL++ +        K  +R     + +       V++  +   +  +E  
Sbjct: 605 YVGITRARQQLVMTRTLFRKKYGKLEERVPSRFLEEIPGGVLNVQQSGVVKEVTPEEAE 663


>gi|157368435|ref|YP_001476424.1| DNA-dependent helicase II [Serratia proteamaculans 568]
 gi|157320199|gb|ABV39296.1| DNA helicase II [Serratia proteamaculans 568]
          Length = 723

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 116/722 (16%), Positives = 222/722 (30%), Gaps = 132/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 33  GAGSGKTRVLVHRIAWLLAVENCSPYSIMAVTFTNKAAAEMRHRIEHLIGTSQGGMWIGT 92

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    + + +   LK  +K    +  +   R         
Sbjct: 93  FHGLAHRLLRAHHLDANLPQDFQILDSDDQFRLLKRIVKALNIDEKQWPPRQAMWYINGK 152

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +             +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 153 KDEGLRPQHVETYNNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---I 209

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   ++L+DE QDT+ IQ+  IR L  +             +  VGD+ QSIY +
Sbjct: 210 LNHYRERFTNVLVDEFQDTNSIQYAWIRLLAGN----------NSNVMIVGDDDQSIYGW 259

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R  +               + L  ++RST++IL   + + +      G + 
Sbjct: 260 RGAQVENIQRFLKDFP--------GAQSVLLEQNYRSTSNILKSANTLIANNGGRMGKN- 310

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +        R +
Sbjct: 311 --------------------LW-------TEGGEGEPISVYCAFNELDES-------RFV 336

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     D  +L R    + ++            +       
Sbjct: 337 VGRIKAWQENGGAL----------NDCAILYRSNAQSRVLEEAL----LQTAMPYRIYGG 382

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD +A  R I ++ DD +F  ++ +P     +  + ++    R    T+++
Sbjct: 383 QRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGIGDRTLDEVRRTARDRQLTMWQ 442

Query: 469 YIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG---RQQFIS 519
             +        A    S  Q   + +  L H       H     ++         +Q   
Sbjct: 443 ATRVLLQDKVLAGRAASALQRFTELLDSLAHETADMPLHVQTDRVIRDSGLFIMYEQEKG 502

Query: 520 RFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
             G   I+ L+E +  T +   Q+    L  L + L        +    A  + V++MT+
Sbjct: 503 EKGQARIENLEELVTATRQYSYQDEDQDLMPLQAFLSHAALEAGEGQADAYQDAVQLMTL 562

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VF+V     +F  +                                    
Sbjct: 563 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 593

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA  +L +          K         + +         +
Sbjct: 594 -----RLEEERRLAYVGLTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVR 648

Query: 698 IK 699
           ++
Sbjct: 649 LR 650


>gi|172060415|ref|YP_001808067.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
 gi|171992932|gb|ACB63851.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
          Length = 787

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 116/748 (15%), Positives = 222/748 (29%), Gaps = 161/748 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T         L   Y++  ++  V+DF +L++   +LL      A +R  
Sbjct: 150 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  + 
Sbjct: 257 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + S+ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EASTDAQEAGWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I T           +   ++ VL R    +  I            I          
Sbjct: 334 IRSLINTG----------MSRSEVAVLYRSNAQSRAIEHTL----MTSGIPYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        I ++    Q  S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVTGKAGTSLGGFATLIAKMRAETQQMSLPETVEYVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDAPARSIPLRAGAIAAPELGVDANDPSVDVLDPAPLDDPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++           A          
Sbjct: 646 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGARWGGRSDNAGWGRDWFSRP 705

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKN 749
               RE+ +   +              +
Sbjct: 706 GGGSREQVVDAAVSAPLPAFANKQRAAD 733


>gi|296532805|ref|ZP_06895482.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC
           49957]
 gi|296266866|gb|EFH12814.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC
           49957]
          Length = 745

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 114/629 (18%), Positives = 201/629 (31%), Gaps = 119/629 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ L A Y+E  K+    DF DL+++  ++L+       +  +  +   +IL+DE QDT+
Sbjct: 183 ARSLYAAYQERLKQLNATDFGDLMLHVVEVLRGHPD---VLAQYHRNFRYILVDEYQDTN 239

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+  +R L +        + + R +  VGD+ QSIYS+ GAE + +LR ++       
Sbjct: 240 TVQYLWLRLLAQRP------NQTERNICCVGDDDQSIYSWRGAEVENILRFEKDFP---- 289

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 +I+ L  ++RSTA IL     + +      G +         R  R    G   
Sbjct: 290 ----GATIVRLESNYRSTAPILAAASGLIAKNSGRLGKT--------LRPGRKDASG--- 334

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          ++    S +DS  +       AR +   I                
Sbjct: 335 ---------------EKVRVVSLWDSEEE-------ARMVGSRIEAARRDGQSL------ 366

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                +I +LVR    T         L     I           +   I+D MA  R + 
Sbjct: 367 ----AEIAILVRAGFQTRAFEERLITL----GIPYRVVGGQKFYERAEIRDAMAYLRVVN 418

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-------YEYIQKFANCGISKFQ 482
              DDL+F  ++ +P     +  + ++     E                           
Sbjct: 419 QPADDLAFERIVNTPKRGLGDTALRQLHEAAREQGVPLVAAAGGMVASGGMRPKPRQALH 478

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
            +++       +            +L      + +      E    +D L E L      
Sbjct: 479 ELLEGFARWREMLSREGHVVVAATLLDESGYTEMWKQDKSPEAPGRLDNLKELLRAMAEF 538

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     ++    +   +V +MT+H AKGLE  +VFL      +F 
Sbjct: 539 ES--------LAGFLEHVALVMENDEQSEDGKVSLMTLHAAKGLEFDMVFLPGWEEGLFP 590

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                  +    +   EE  RL YVG+TRA 
Sbjct: 591 HQR--------------------------------ALDEGGEKGLEEERRLAYVGITRAR 618

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               I   +N     +     W   +   F ++   +++ +     +    A   +    
Sbjct: 619 KYCTISHAAN-----RRIYANWTSAIPSRFLDELPPEQVTVEGGQRRQPMAAMPSAFSGQ 673

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                 +   I+    E        +PI 
Sbjct: 674 FPLIARKPRVIEAGSWEVSERPAKTAPIP 702


>gi|78486038|ref|YP_391963.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2]
 gi|78364324|gb|ABB42289.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2]
          Length = 1182

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 155/994 (15%), Positives = 334/994 (33%), Gaps = 115/994 (11%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+    L +++        L+P+    +  I ++ + +M+   P +             +
Sbjct: 244  LEKALALLVSQEKSQAIDTLYPVMPL-LQQIAEFAAFAMQNDQPQLKPLVD---DPLTKE 299

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP--------------------DLKEKL 100
                 +  L  + L+ +    K +  ++                          D++ + 
Sbjct: 300  SDLAAWQALGDWILSTQGKFLKTVTVKKGFPAGKGENKEQKDAFLALLAELNVADIRGQY 359

Query: 101  KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
             ++     ++ +   + + +++    + L +   AH +   +     DF ++    +  L
Sbjct: 360  AEALVLLSQLPEGHYSDEQWQNLRHLIQLLRRTVAHLKLCFQTEGETDFIEVAQAASQAL 419

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                    +  ++D  + H+LIDE QDTS+ Q+++++ +   +     +     +LF VG
Sbjct: 420  GHELEPTDLAQQLDYTLKHLLIDEFQDTSVAQYDLVKKIVAGW-----SQEDAHSLFIVG 474

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D  QSIY F  AE        +  + R        + + L ++FRS+  ++  V++ F+ 
Sbjct: 475  DPMQSIYRFREAEVGN---FLQAWKGRLG--EVPLTPLSLEVNFRSSKGVVDWVNQTFAK 529

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                + L E                G V     V    ++              ++    
Sbjct: 530  VFPKKSLIEQ---------------GAVSYAPAVAFSEEASP------------AVYTHW 562

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
            +    A   A  I  +I                  I VL R R     +    +      
Sbjct: 563  ALQQSAWEEAADILTLIQERLSTLKTDAA------IGVLGRSRSHLMCVAIQLK----QA 612

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             I+    +   L D   I+D  AL R +L   D  +++ +L+SPL   S  D++++  + 
Sbjct: 613  GIAFRAVELEGLKDRQEIQDCEALTRSLLHLGDRPAWIALLRSPLVGLSLTDLYRLLGEN 672

Query: 461  HE----------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             +           +  +   Q+ ++ G  +    +  + + ++     +          A
Sbjct: 673  DDYFQTPVWETLQDKTHSGWQQLSDAGRQQLGRSLPVLEKALNSMGSYALEVLAHETWLA 732

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
              G Q   S    + +D     L         S  + + L   LE          S    
Sbjct: 733  LDGPQTVESAMALQNVDAFWMMLGNLEAQHDVSALTAKGLSDTLET--LYALPDASEASQ 790

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP------Q 624
            ++ +MT+H +KGLE   V L   G    S +      +      +    +  P       
Sbjct: 791  KIELMTMHKSKGLEFDTVILPGLGRPPRSDEKQLLSWLSFKGQHEQSYLVIAPFEQKGKA 850

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD- 683
            ++ +  + + + ++ +     E +RLLYV  TRA  QL +      S +  +        
Sbjct: 851  AQKQPGLANVIKRYEEIKQSYELSRLLYVACTRAKQQLHLFGSVAVSEKAFNGDAALMPK 910

Query: 684  ---MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
               ++   +  +    ++ LT+   KD     +         PLER+   +   +E ++ 
Sbjct: 911  KKSLLECLWSLEAPAFEVLLTDYQFKDVEDNTQELLPKVSRLPLERQGFWQTQREESELV 970

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
            K     +  D +   +L    +     T L SL         G  +H + +         
Sbjct: 971  KAARMGVVEDEDTDELLKV-DVAAPSATPLSSLHGGVLAKTVGNFVHAVFEQWAQQDLSS 1029

Query: 801  R-KNFITSYCTKNA-----KLWPAKEYKNLLLSIT----RLLENPMMTTAMSCDSYSEVS 850
                 + S   +            +  K  L  +       L NP +  A+S + ++E +
Sbjct: 1030 WDATLLESQRERYRYGLMQMGLNRELLKTALERVMMSLSHALHNPKVRWALSRE-HTESA 1088

Query: 851  VSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT--------HI 901
            V   ++  ++    +  ID+  + +    +I +YKT      + E             + 
Sbjct: 1089 VELPLSAKEETGQSNHIIDRTFVDEQNTRWIIDYKTSVFDLDKSEQDKKAFLQSQIDVYT 1148

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             QL  Y ++L     N+    +L +    +   +
Sbjct: 1149 PQLERYGQLLGAI-ENRPQKRVLYFSYLDEWIEL 1181


>gi|300721452|ref|YP_003710727.1| DNA-dependent ATPase I and helicase II [Xenorhabdus nematophila
           ATCC 19061]
 gi|297627944|emb|CBJ88490.1| DNA-dependent ATPase I and helicase II [Xenorhabdus nematophila
           ATCC 19061]
          Length = 721

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 114/694 (16%), Positives = 222/694 (31%), Gaps = 132/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENASPFSIMAVTFTNKAAAEMRHRIENLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    +   +   +K  +K    +  +   R         
Sbjct: 90  FHSLAHRLLRAHHLDANLPQDFQILDSEDQHRLIKRIIKAMNLDDKQWPARQGMWYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +             +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 150 KDEGLRPQHIESYGNPVEATWLKIYQAYQEACDRAGLVDFAELLLRAHELWLNKP---QI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   +IL+DE QDT+ IQ+  I  L  +             +  VGD+ QSIY +
Sbjct: 207 LQHYRERFTNILVDEFQDTNSIQYAWIHLLAGE----------SGKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R                  I L  ++RST++IL   + + +   +  G + 
Sbjct: 257 RGAQVENIQRFLNDFP--------GAETIRLEQNYRSTSNILKAANVLIAHNSDRLGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +        R +
Sbjct: 308 --------------------LW-------TEGGEGEPISLYCAFNELDES-------RYV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I + +                K+  +L R    + ++            +       
Sbjct: 334 VGRIKHWLDNGGAL----------KECAILYRSNAQSRVLEEAL----LQASMPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
               +   IKD ++  R + +++DD +F  ++ +P     +  +  +    R + +T++E
Sbjct: 380 QRFFERQEIKDALSYLRLVSNRQDDAAFERVVNTPTRGIGDRTLDVVRQAARDQQKTLWE 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             Q             S  Q  I+ I+ L    Q    H     I+        +    G
Sbjct: 440 SSQLLIQEKVLAGRAASALQRFIELINALESETQDMPLHVQADRIVRDSGLWAMYQQEKG 499

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +     + L+E +  T +    +   +L  L + L        +    A  + V++MT+
Sbjct: 500 EKAQARIENLEELVTATRQFSYTDEDENLLPLQAFLSHAALESGESQADAYQDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMS---------------------------------- 585

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             +    EE  RL YVG+TRA ++L +    +  
Sbjct: 586 IEEGDRLEEERRLAYVGVTRAMEKLTLTYAESRR 619


>gi|319410695|emb|CBY91074.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis WUE 2594]
          Length = 671

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 112/609 (18%), Positives = 202/609 (33%), Gaps = 116/609 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T   A       + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNAWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +++L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVVKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                 +    A  +   I   I    I  +      Q  D  VL R +    +     R
Sbjct: 314 ---ACQNEQHEADWVVSQI---IKQKLIGGDKT----QYADFAVLYRGKHQARIFEEALR 363

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 +I    +      D   IKD+++  R + +  DD +F+  + +P     +  + 
Sbjct: 364 ----GVRIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVTLG 419

Query: 455 KICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           K+    HE E          E +    N      Q  +         A+     +F   +
Sbjct: 420 KLNAYAHEHECSLYEAAQTEEALATLNNTNRQHLQAFMDMFGSYRAKAETGEAGEFINSL 479

Query: 508 LGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           L         ++      G      + + +++  R       ++ EL   +        +
Sbjct: 480 LEEIDYENHLLASEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLEGK 539

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + V + T+H AKGLE P VFLV     V  H                       
Sbjct: 540 D-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN---------------------- 576

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                          +++   EE  RL+YVG+TRA  QL +        +          
Sbjct: 577 -------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEPSR 623

Query: 684 MVYDSFHND 692
            + +    D
Sbjct: 624 FIDEMPQED 632


>gi|296314222|ref|ZP_06864163.1| ATP-dependent DNA helicase Rep [Neisseria polysaccharea ATCC 43768]
 gi|296839123|gb|EFH23061.1| ATP-dependent DNA helicase Rep [Neisseria polysaccharea ATCC 43768]
          Length = 671

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 107/576 (18%), Positives = 189/576 (32%), Gaps = 118/576 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A Y+E  +    +DF+DLI     LL++    + +R K  + + ++L+DE QDT+
Sbjct: 162 TARVYASYQETLQSYQAVDFDDLIRLPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTN 218

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +++ LT           +     AVGD+ QSIY++ GA  + + + +    +   
Sbjct: 219 TCQFTLMKLLTG----------AEGMFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--- 265

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RSTA IL + +KV                                
Sbjct: 266 -----MKVIKLEQNYRSTARILKIANKVIENNPKLFTKK--------------------- 299

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI--SNMIGTDTIFSNGK 367
           LW Q+      +                   +    A  +   I    +IG D       
Sbjct: 300 LWSQLGEGDPVKVV--------------ACQNEQHEADWVVSQIVKQKLIGGDKT----- 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q  D  VL R +    +     R      +I    +      D   IKD+++  R 
Sbjct: 341 ----QYADFAVLYRGKHQARIFEKALR----GARIPYRLSGGQSFFDKAEIKDVLSYVRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISK 480
           + +  DD +F+  + +P     +  + K+         ++YE  Q         N     
Sbjct: 393 LANPNDDPAFLRAVTTPKRGIGDVTLGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQH 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF----GNEVIDVLDEFLNFT 536
            Q  I         A+     +F   +L         +       G      + + +++ 
Sbjct: 453 LQAFIDMFGSYRAKAETGEAGEFINSLLEEIDYENHLMQNEEGKAGEIKWRNVSDLVSWF 512

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            R       ++ EL   +        +      + V + T+H AKGLE P VFLV     
Sbjct: 513 ARKGGEDGKNIIELAQTVALMTLLEGKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEG 571

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           V  H                                      +++   EE  RL+YVG+T
Sbjct: 572 VLPHN-----------------------------------DSIEEGNVEEERRLMYVGIT 596

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           RA  QL +        +           + +    D
Sbjct: 597 RAKRQLTLTHCVKRKKQGIWQFPEPSRFIDEMPQED 632


>gi|172040209|ref|YP_001799923.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
 gi|171851513|emb|CAQ04489.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
          Length = 1022

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 107/749 (14%), Positives = 215/749 (28%), Gaps = 173/749 (23%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQ-------ASQTQCIEERFSLLSSFFLTQKF 78
             ++  NK  +   E     +   A+ +             +      + L++ F     
Sbjct: 215 LAITFTNKAAAEMRERVADLVGPAAERMWVSTFHSMCVRILRSNAHLVAGLNTNFTIYDS 274

Query: 79  TPQKNIITQEINKKSPDLKE-----KLKKSQDEFIKIRDRFNTYKMFKSTLASL-TLAKY 132
              K +IT  I   + D+KE      L    +   ++           +           
Sbjct: 275 DDSKRLITMVIKDHNLDVKEFAPRGVLSTISNWKNELVGPTAAKAEADADSNFHKQTVAS 334

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y++  +    +DF+DLI     +L+       +     +   H+L+DE QDT+  Q
Sbjct: 335 LYADYQKRLRAANAVDFDDLIGEVVGILRNNP---QVAEHYRRRFRHVLVDEYQDTNHAQ 391

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + ++ +L           S    L  VGD  QSIY+F GA  + +   +R          
Sbjct: 392 YVLVSTLV------GEEGSGGGELAVVGDADQSIYAFRGATIRNIEEFERDYPN------ 439

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL+  + V       +                        LW 
Sbjct: 440 --AHTILLEQNYRSTQTILSAANAVIDRNTERRPKK---------------------LW- 475

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       ++ +     +   +       AR IA  I  ++             + 
Sbjct: 476 ------TDLGQGEKIAGYVADNEHDE-------ARFIAGEIDRLVDEG----------VA 512

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             DI ++ R    +  +  +         +           +   I+D+++  + + + E
Sbjct: 513 YGDISIMYRTNNASRALEDVL----MRSGLPYKVVGGTRFYERKEIRDIVSYLKVLDNPE 568

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKF--------QH 483
           D ++   ++ +P     +  + ++      +  +  + ++  A   +++           
Sbjct: 569 DTVALRRIINTPRRGIGDRALAQVTVHAEAQGVSFAQGLRDAAEDKVARLGGRGRNAIAG 628

Query: 484 VIKYIHELIHIAQFC-------------SPHDFFTLILGAKKGRQQFISRFGNE---VID 527
            +  +  L    +                       I+     R +       +    +D
Sbjct: 629 FLSMMDGLRKTVEDAELRASDGSPLGLPDLGAIIAAIVEQSGYRAELEKSNDPQDQTRLD 688

Query: 528 VLDEFLNFTLRNEQ---------------------------------NSYSSLQELISEL 554
            ++E ++      Q                                    + L  + + L
Sbjct: 689 NVNELISVGHEFSQEAAHQKAYEEMPAGKAVQPEVQLTQDVADAMLDEGEAPLGSVQAFL 748

Query: 555 EQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           E+                ++ +MT+HTAKGLE PVVFL       F H            
Sbjct: 749 ERVSLVADADQIPEEGAGQITLMTLHTAKGLEFPVVFLTGWEDGQFPHMRALSDPT---- 804

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                            E  RL YVG+TRA ++L IC+    S 
Sbjct: 805 ------------------------------ELAEERRLAYVGITRAKEKLYICRAITRSG 834

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                       + +         + +  
Sbjct: 835 WGAPVNNPPSRFLSEVPEELVEWLREEPD 863


>gi|25027347|ref|NP_737401.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
            YS-314]
 gi|23492628|dbj|BAC17601.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
            YS-314]
          Length = 1175

 Score =  270 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 134/1030 (13%), Positives = 270/1030 (26%), Gaps = 159/1030 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +          L       +    S  + T         Q +          +  + ++ 
Sbjct: 212  TVSTYDSYAGSLLREYGLLLPVEPSARLITQTELYHIARQVVDNYRGELTATQSPATVTE 271

Query: 72   FFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            + L        +++T + I ++S       ++      K          ++ T  +    
Sbjct: 272  YLLDLVSEMDNHMVTPDEIREESQPFINLFEELPTHNGKDTPLPQEMARWRDTQITRLQY 331

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              L    ++      V+ F + +     L  +      + Y   +    +++DE QDTS 
Sbjct: 332  LPLVEQLKQELHDRAVITFGEQMSKAARLASRHP---QVGYSQRRRFRVVMLDEYQDTSH 388

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q  ++RSL      G        T+ AVGD  Q+IY + GA    +          + +
Sbjct: 389  SQRVLLRSLFGGTDPGL-------TVTAVGDPMQAIYGWRGATAANLENFVGDFPVISLD 441

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            A       EL  S+R+  ++L + + V             +   +  R            
Sbjct: 442  ARTDAPKRELTTSWRNPPEVLELANAVSREVLGPADAPTRTVQPLEPRPGAP-------- 493

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                           Q  W +                 +A  +       +         
Sbjct: 494  -----------TGEVQIGWFATAQEERA---------FVADELKKYWDARSEKFTA---- 529

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                   VLVRKR+ +  +    R       I V       L D   + D++A+   ++ 
Sbjct: 530  ------AVLVRKRRHSEPMAAELRA----RGIPVEIVGLSGLLDVPEVADMVAIATMLVR 579

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--TETVYEYIQKFANCGISKFQHVIKYI 488
             +D+ + + +L  P       DI  +  +             ++         + +   I
Sbjct: 580  PQDNRAALRILGGPHVGLGIADIQVLQRRAANLAGRVRPGSPKEKEPLPEEPLERLAAQI 639

Query: 489  HE------------------------------------------LIHIAQFCSPHDFFTL 506
             +                                          L   +   S  D F  
Sbjct: 640  ADTVPTEPEEIVGLTDAVSDLGEATNFSLEGLRRLRRLAAQLRHLRTNSLGHSVADIFAD 699

Query: 507  ILGAKKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQE-LISELEQYPPT 560
            I      R + ++R             LD F +    +   S   L +      +Q    
Sbjct: 700  IEEVFGIRTEVLARENPRADGATGTVHLDRFADEVAAHSSVSLPELLDYFQLARDQEDGL 759

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH------KHIKKMHIMPSLND 614
                 +   + V+I+TVH AKGLE  +V ++   +  +        K++K +      + 
Sbjct: 760  EPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADANTYDAKAFTWLKNVKHIPSSLRGDA 819

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ----EEYNRLLYVGMTRASDQLIICKHSNT 670
              G P            +    K      +    EE +RL YVG+TR+   L++   +  
Sbjct: 820  GEGSPELDTSGVENRRDLQAAEKEYTAEVRSSLAEENSRLFYVGITRSERALMVTGSAID 879

Query: 671  SNEKKSNQRTWY----------DMVYDSFHNDERVKKIKLTN--------SINKDEWIAY 712
                ++     +           +V      +  V+K+                 E    
Sbjct: 880  GTTTRAKVPYAHLETLKATAPDAVVTWWEGEEADVEKLPAEEAMYPAVTIPPGVAEGAEL 939

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------DT 764
              +T    +     EE  ++ +       +       ++     L  + +          
Sbjct: 940  VRATPSDASFDGGIEELWEREVTVLIDEHRRLQSPTLEVEISRELTATDLVNLKNNPEQF 999

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
              +         N    RG   H+ L+         R                 +  +  
Sbjct: 1000 ARRLRRPVPFKPNTYAKRGTQFHQWLE--------DRFGASALLDEDQLPGMDEELSEQT 1051

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEY 883
               +                  +   V           +I GR+D +         + ++
Sbjct: 1052 FEELRAAFLESRWAD------RTPNYVEHPFEVVIGRHVIRGRMDAVFHEPDDTWLVVDW 1105

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLN 941
            KT               I QL++Y              +     YV+    F        
Sbjct: 1106 KTGQTPRGAEMDAA---IIQLAVYRIAWASLRGIDPQQVRGAFHYVAHNHTFEPDHLPDA 1162

Query: 942  KAFAEISTKI 951
               A +    
Sbjct: 1163 GELALLLDGA 1172


>gi|124266334|ref|YP_001020338.1| ATP-dependent DNA helicase UvrD [Methylibium petroleiphilum PM1]
 gi|124259109|gb|ABM94103.1| ATP-dependent DNA helicase UvrD [Methylibium petroleiphilum PM1]
          Length = 788

 Score =  270 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 99/678 (14%), Positives = 207/678 (30%), Gaps = 147/678 (21%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               ++     +  +         + +   YE+  ++  V+DF +L++ T +L++     
Sbjct: 158 IAGAKEDGLRPQHIEVRDELTRTQQAIYQAYEDQCQREGVVDFAELMLRTYELMRDH--- 214

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           A +R    +   HIL+DE QDT+ +Q+  ++              +   + AVGD+ QSI
Sbjct: 215 AELRQHYQRRFRHILVDEFQDTNRLQYAWLKMFAG----------TDNNVLAVGDDDQSI 264

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+F GA    +   +R    +         +++L  ++RS  +IL   + + +      G
Sbjct: 265 YAFRGARVGNMADFEREFHVQ--------QVVKLERNYRSFGNILDSANALIAHNSRRLG 316

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +  +           G+   V                             + +S    A
Sbjct: 317 KNLRTEAG-------PGEPVRVF----------------------------EATSDFAEA 341

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           +        +    +             +I VL R    + +I         +  +    
Sbjct: 342 QWFLDEARQLQRDGSP----------RSEIAVLYRSNAQSRVIESAL----FNAGVPYRV 387

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  +   IK  +A  R I +  DD SF+ ++  P        +  +    R    +
Sbjct: 388 YGGLRFFERAEIKHALAYLRLIENPNDDTSFLRVVNFPTRGIGTRTMELLQDAARSSGRS 447

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNE 524
           +++ +   A  G S        +  +    +  +  +    ++ +      + +   G E
Sbjct: 448 LWQSVGAIAGKGGSNLGAFTALVDAMRDATRGLTLREIIEHVVQSSGLADFYRNEKEGAE 507

Query: 525 VIDVLDEFLNFTLRN-------------------------------------EQNSYSSL 547
            ++ LDE +N                                          +  +   +
Sbjct: 508 RLENLDELVNAAEAFVTQEGFGKDAVALPVDEQAGRIAERLPAAVALVDTQPDAETGEIM 567

Query: 548 QELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
             L + L             A  + V++MTVH AKGLE   VF+      +F H++    
Sbjct: 568 SPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHAAKGLEFDQVFITGLEEGLFPHEN---- 623

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                                 EE  RL+YV +TRA  +L +  
Sbjct: 624 ------------------------------AAADLDGLEEERRLMYVAITRARKRLYLSF 653

Query: 667 HSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
                     + + +  ++D + ++       K     +   +D   A++  T       
Sbjct: 654 SQTRMLHGQTRYNLKSRFFDELPEAALKWLTPKLQGFGSGYARDYQAAWQRGTGLGSMVG 713

Query: 724 LEREETIKQLMDEQKIPK 741
             R          +   +
Sbjct: 714 AGRVVPASAPAAFEAQAR 731


>gi|308185248|ref|YP_003929381.1| putative ATP-dependent DNA helicase [Helicobacter pylori SJM180]
 gi|308061168|gb|ADO03064.1| putative ATP-dependent DNA helicase [Helicobacter pylori SJM180]
          Length = 681

 Score =  270 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 97/572 (16%), Positives = 184/572 (32%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    +  +I +   +I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLCLSLKILQDNE---KLAKEISERYYYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKQLS----------CTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              I++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKIVKLETNYRSSAEILACANSLISHNQHRHIKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHVVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K         +  I 
Sbjct: 388 RFFIKRVLNKPPRGLGKITQEWIFSLLDDEDLNLEEALKLVAFKDKLNPKNEYALKQFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVEEFCERFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +    +    + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDVHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQLLQQDRPP 619


>gi|254297873|ref|ZP_04965326.1| DNA helicase II [Burkholderia pseudomallei 406e]
 gi|157806965|gb|EDO84135.1| DNA helicase II [Burkholderia pseudomallei 406e]
          Length = 787

 Score =  270 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 112/736 (15%), Positives = 218/736 (29%), Gaps = 161/736 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R          I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVRNP--------IKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
             A    S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVAGKAGSSLASFANLIAKMRAETARMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------ALESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++           A          
Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFARP 705

Query: 722 TPLEREETIKQLMDEQ 737
               R+  +   +   
Sbjct: 706 GGGARQGVVDAAVSAP 721


>gi|260583198|ref|ZP_05850977.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae NT127]
 gi|260093755|gb|EEW77664.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae NT127]
          Length = 677

 Score =  270 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 115/644 (17%), Positives = 223/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 124 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 181

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 182 RAYNALDFDDLIMLPTLLFKRNEE---VRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 238

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 239 D----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 280

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    ++       S                              
Sbjct: 281 QNYRSTQRILHCANILIDNNDHVFDKKLFS------------------------------ 310

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 311 TIGEGEKLLIIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 356

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 357 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 412

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  ++++ I +F              Q   ++I EL   
Sbjct: 413 NTPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 472

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L      +       +          +    ++        E N   
Sbjct: 473 IQRSEPERAVRSMLSVIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 532

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 533 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 592

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 593 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 618 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 661


>gi|116689464|ref|YP_835087.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424]
 gi|116647553|gb|ABK08194.1| ATP-dependent DNA helicase UvrD [Burkholderia cenocepacia HI2424]
          Length = 787

 Score =  270 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 117/748 (15%), Positives = 223/748 (29%), Gaps = 161/748 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T         L   Y++  ++  V+DF +L++   +LL      A +R  
Sbjct: 150 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  + 
Sbjct: 257 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + S+ S  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EASTDSQEAGWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I T           +   ++ VL R    +  I            I          
Sbjct: 334 IRSLINTG----------MARSEVAVLYRSNAQSRSIEHTL----MSSGIPYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        + ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSVEQLADAARLYGCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        I ++    Q  +  D    I+ A      +   R G + ++ L 
Sbjct: 440 YVTGKAGTSLGGFANLIAKMRADTQHMNLPDTVEHIVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFIAEEGYGLDTPARSIPLRAGAIAAPELGTATDDPAVDVLDPASPADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DTMTPLAGFLSHAALEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++  +        A          
Sbjct: 646 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGYGRDWFARP 705

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKN 749
               RE+ +   +              +
Sbjct: 706 GGGSREQIVDAAVSAPLPAFANKQRAAD 733


>gi|119503960|ref|ZP_01626041.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080]
 gi|119459963|gb|EAW41057.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080]
          Length = 1115

 Score =  270 bits (689), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 144/946 (15%), Positives = 305/946 (32%), Gaps = 90/946 (9%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            + E +   +    +  +   ++ +    +     + K   +L            +   + 
Sbjct: 216  TVEALIASVVRRLHESLEPWSEELQALAQLSADELDKPEVSL---CSNYQALASWQYAAH 272

Query: 72   FFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKI-----RDRFNTYKMFKSTL 124
              LT     +K   +  +       + K +L+       ++             +     
Sbjct: 273  ILLTGTNEWRKPGGVNIKLGFPAKSEAKARLQSLLTSLSELPVPSALLELRALPVLSDND 332

Query: 125  ASLTLAKY-------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
             S  L          L A      ++   +DF  + +  +  L   +    +  ++D +I
Sbjct: 333  TSWRLVLRLSRLLPVLQAQLLLVFQREGRVDFTHVALAASQALGSDEEPTDLALRLDYQI 392

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             HIL+DE QDTS  Q+++++ L   +     T + PRT F VGD  QSIY F  A+    
Sbjct: 393  AHILVDEFQDTSNQQFKLLKKLMRGWHEHNVTGAPPRTAFIVGDGMQSIYGFRYADVGLF 452

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L+ K          G     +EL  +FRS A ++  V++VF+                  
Sbjct: 453  LQAKAR-----GIGGLPLESLELTQNFRSQAGVVDWVNRVFAQVF--------------- 492

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                             VS   +          +    L  + +    A  IA  I ++ 
Sbjct: 493  -------PKVNDAERSEVSHTSAVPVNAALPGNAVEAHLFPDDAGLAEANWIAGKIGHIY 545

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
             ++               I VL+R R                + +  +G D   +    +
Sbjct: 546  QSEPD-----------ATIAVLIRARSHAAP----IIAALQQHDLPFLGRDLEKIQHSAS 590

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            + DL++L R++ +  D+++ + +L++P       +I+ +   +    ++ + +++ ++  
Sbjct: 591  VMDLLSLCRWLSNPADEVAALALLRAPFCGLLLSEIYALIEDQPRPLSLRKILRRASDLL 650

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             +        +   +  A+         + +     + Q  S    +       F +   
Sbjct: 651  DADAAIRAGSLEAALDWAESRRDRLSLRIWVEQIWLQLQAASTLSMQGRADAMSFFDLLA 710

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            R +             LE+       +H      V +MT+H AKGL+   VF+       
Sbjct: 711  RADAEGVG---LDPDWLERALEQRYASHEHGQFGVELMTLHKAKGLQFDYVFMPALHKGT 767

Query: 598  FSHKHIKKMHIMPSLNDDPGIPI-WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              ++         +   +    I    + K    + + L    K     E  RLLYVG+T
Sbjct: 768  RGNQRELLRWHFQAREGERSFLIAADDRLKKAPTLYNYLSWLQKGKEAAELRRLLYVGVT 827

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA  ++ +       N   S           ++        I            A   + 
Sbjct: 828  RARCRVWLSGAGRVDNTDGSQL---------TWPGSASPLGILREALSGNAVEHASSITE 878

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
               E    E + ++      +     L +   +D     I     I  +    ++     
Sbjct: 879  TPREEKDSETQPSLPTCQLLRLPLANLVAHKPDDGALASIERQQGIQAEQLALIQHAGHF 938

Query: 777  NQTFNRGLIIHKLLQVIFTLP--EHKRKNFITSYCT---KNAKLWPAKEYKNLL---LSI 828
            N+    G+++H+ L+++       ++    I         +A L+     ++L+     I
Sbjct: 939  NE-RTVGVVVHRALELLSQRDVLPNEVDTAIRRGLQFGLADAGLYGDSLTESLVVAETMI 997

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ--QNIFIFEYKTH 886
               L +      +S  S +   +    +       +   ID+  +       ++ +YKT 
Sbjct: 998  AATLNDERGRWILSQRSDAHSELVLM-SSGVNGAPVQNIIDRTFLDSETGKRWVIDYKTS 1056

Query: 887  HHVPQEIEHI-----PYTHIAQLSIYEKILKDSYPNKS-LVCLLIY 926
               P E E          +  QL+ Y  +++   P  S +   L +
Sbjct: 1057 RPNPLETEQQFLAREVQHYAPQLTRYRALIEAFDPAASAVKTALYF 1102


>gi|163738701|ref|ZP_02146115.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
 gi|161388029|gb|EDQ12384.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107]
          Length = 787

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/652 (16%), Positives = 196/652 (30%), Gaps = 119/652 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
              A Y+   K    +DF DL+++   + +       +  +  +    I++DE QDT++ 
Sbjct: 195 DFYAQYQARLKDLNAVDFGDLLLHMVTIFQDNPD---VLEQYQRWFRFIMVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L            + + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLAG----------AHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +++ L  ++RST  IL+    V        G                      +LW
Sbjct: 296 --GANVVRLEQNYRSTEHILSAASGVIRGNSGRLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++     ++D   +       AR I   I  M              +
Sbjct: 333 -------TEARGGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGLAPV 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              ++ +LVR                    +           + L I+D MA  R ++S 
Sbjct: 374 DLNNMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRQVISP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484
           +DDL+F  ++ +P     +     I T          E   +     +    G      +
Sbjct: 430 DDDLAFERIVNTPKRGLGDKAQQTIQTMARSNGVSLVEGARLAVESGQIKGKGGKALHQL 489

Query: 485 IKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           +  +     +A     +  +   +IL        + +    +    ++ L E +      
Sbjct: 490 VTDLARWGRLAGDADTTHMELAEIILDESGYTTMWQADKNPDSPGRLENLKELVKALEAF 549

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +         +V IMT+H AKGLE P VFL      +F 
Sbjct: 550 EN--------LQGFLEHVSLIMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 601

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 602 SQRS--------------------------------MDESGLKGLEEERRLAYVGITRAE 629

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +   I    N         ++     +     +E V+ +            A        
Sbjct: 630 EICTISFAGN--RRVFGQWQSQLPSRFIDELPEENVEVLTPPGLYGGGYGAAAPSGGGGA 687

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
             + +E         +     +      +  +++P     S ID    +   
Sbjct: 688 VRSTIEDRMAAADGYNSPGWKRMQSRAGERGLSQPRESKSSVIDLTATSAFM 739


>gi|119468303|ref|ZP_01611429.1| DNA-dependent ATPase I and helicase II [Alteromonadales bacterium
           TW-7]
 gi|119448296|gb|EAW29560.1| DNA-dependent ATPase I and helicase II [Alteromonadales bacterium
           TW-7]
          Length = 721

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/585 (16%), Positives = 198/585 (33%), Gaps = 121/585 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A Y+EA  +  ++DF ++++ + ++LK       +     Q   H+L+DE QD
Sbjct: 167 QMMLRVYAAYQEACDRAGLVDFAEILLRSYEVLKNNPT---LLRHYQQRFAHMLVDEFQD 223

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ+  ++ L  D             +  VGD+ QSIY + GA+ + + R        
Sbjct: 224 TNTIQYAWLKLLAGDTSS----------IMIVGDDDQSIYGWRGAKIENIKRFLTDF--- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RSTA IL   + +        G S                   
Sbjct: 271 ------DAETIRLEQNYRSTATILKASNALIKNNSERMGKS------------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +  S  + F+ L +       AR ++  + + +          
Sbjct: 306 --LW-------TDGNEGEPISIYAAFNELDE-------ARFVSSKLRSWLNAGNAL---- 345

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 +D  +L R    + ++            +           +   IKD ++  R 
Sbjct: 346 ------QDAAILYRSNAQSRVLEEAM----LQEGLKYRIYGGMRFFERQEIKDALSYLRL 395

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISK 480
           + +++DD +F  ++ +P     +  +  I    R E+  ++         Q  +      
Sbjct: 396 VGNRQDDAAFERVINTPARGIGDKTLSHIRDCARAESLPLWYAAKAIVEQQHLSGRAAGA 455

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
               ++ +  +       +  +     +        + +  G +    ++ L+E ++   
Sbjct: 456 VTKFVELVEHIEDKISDLTLQEQAKYTIQTSGLMAMYQAEKGEKGRARVENLEELISACD 515

Query: 538 RNE----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           + E    +   S LQ  ++               + + V++MT+H+AKGLE P+VF+V  
Sbjct: 516 QYELPEEEEFSSPLQGFLAYTSLESGE--GQADEHEDAVQMMTLHSAKGLEFPLVFMVGV 573

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F  +                                      +    EE  RL YV
Sbjct: 574 EEGMFPSQQSN----------------------------------EESGRLEEERRLCYV 599

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           GMTRA D+L I    +     +    +    + +   +     +I
Sbjct: 600 GMTRAMDKLYISHAESRRLYGQEKYHSPSRFLREIPEDCVEEIRI 644


>gi|78066057|ref|YP_368826.1| ATP-dependent DNA helicase UvrD [Burkholderia sp. 383]
 gi|77966802|gb|ABB08182.1| ATP-dependent DNA helicase UvrD [Burkholderia sp. 383]
          Length = 787

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 117/749 (15%), Positives = 224/749 (29%), Gaps = 161/749 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        ++         L   Y++  ++  V+DF +L++   +LL      A +R  
Sbjct: 150 QGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  + 
Sbjct: 257 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + S+ S  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EASTDSQEAGWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I T           +   ++ VL R    +  I            I          
Sbjct: 334 IRSLINTG----------MARSEVAVLYRSNAQSRSIEHTL----MSSGIPYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +FV ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFVRVVNFPTRGIGARSIEQLADAARLYGCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        + ++    Q  +  D    I+ A      +   R G + ++ L 
Sbjct: 440 YVTGKAGTSLGGFANLVAKMRADTQHMNLPDTVEHIVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFIAEEGYGLDTPARSIPLRAGAIAAPELGTATDDPAVDVLDPVSPADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++  +        A          
Sbjct: 646 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGYGRDWFARP 705

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKND 750
               RE+ +   +              + 
Sbjct: 706 GGGSREQIVDPAVSAPLPAFANKQRAADA 734


>gi|312140617|ref|YP_004007953.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311889956|emb|CBH49273.1| putative UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi
            103S]
          Length = 1116

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 141/1077 (13%), Positives = 273/1077 (25%), Gaps = 228/1077 (21%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
              +  + +      +LW L Y  VS  +  +       + T    A + Q A       +
Sbjct: 130  LPIEPSATLLS-ETELWQLAYRVVSAWDDDLDTDRNPASITESVLALSGQLAEHLVEPAD 188

Query: 65   RFSL---LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                   L     T    P      ++    S  L + L+        +           
Sbjct: 189  LREAHTELDKLIHTLPAGP------KQRGGPSKTLLDLLEVQHQRLDLL----------- 231

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                       L     +  ++   LDF   +     +  +      +          +L
Sbjct: 232  ----------PLVQRLADTLRREGALDFGSQMSLAARVASEHPE---VGRSERARFRVVL 278

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   Q  ++ SL            +   L AVGD  QSIY + GA    + R  
Sbjct: 279  LDEYQDTGHAQRVLLSSLFG------GGEDAGLALTAVGDPMQSIYGWRGASAANLPRFA 332

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                      G     +EL  S+R+  + L + + +     +            + R+  
Sbjct: 333  TDFP---LADGTPAPKLELLTSWRNPPEALELANMISEPLRDRG------VEVSKLRARP 383

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V+L      + +                             +A  I+       
Sbjct: 384  AAVPGDVRLALLDTVETER--------------------------AWVADRIAEQYEAAR 417

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            +         +     VLVR+  D   I    R       ++V       L     + D+
Sbjct: 418  VD------GAKPPTAAVLVRRNADAAPIAEELRA----RGLAVEVVGLGGLLHTPEVADV 467

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            +A+ R +       + V +L    +     DI  +  +  E     ++    A    +  
Sbjct: 468  VAMLRLVADPMAGTAAVRVLTGARWQIGAADIRALWKRAGELGIRSDHGATGAVTDAAAL 527

Query: 482  QHVI---------------------------------------KYIHELIHIAQFCSPHD 502
               +                                         +  L          +
Sbjct: 528  DDALGSALPGEQSEQAGLADALADPGPAHRYSEAGYVRICAVAAELASLRERLGQ-PLTE 586

Query: 503  FFTLILGAKKGRQQFISRF-----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                +        +  +R      G    + LD F +        + ++L  L+S L   
Sbjct: 587  LVAEVERVIGIGIEAQARTRQSEVGGAGREHLDAFADVVSGYANRTSATLTGLLSFLAAA 646

Query: 558  PPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI----- 608
                            + V+++TVH+AKGLE  VV +    + VF         +     
Sbjct: 647  EHVENGLAPGEVEVAPDRVQVLTVHSAKGLEWEVVAVPHLTAGVFPSSQASATWLGSVAE 706

Query: 609  MPSLNDDPGIPI-------------WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +P                        +   K   + +      L     +E  RL YV +
Sbjct: 707  LPPTLRGDRAYPGESADGVPVLDLENLYHRKDLEDAIKSHKDALSTRRLDEDRRLFYVAL 766

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI-------KLTNSINKDE 708
            TR    L +  H    +       + + +  +   +    +++          +   ++ 
Sbjct: 767  TRTERALFVSGHHWAESGADPKGPSPFLLELEELVSTWEGERLGAIDVWAPAPDDGAENP 826

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE--------------- 753
              A   S   P +    R   +++  +  +           +                  
Sbjct: 827  LTATPRSALWPRDPLGRRRADVERGAELVRGALAGLGKAAPEPEAVDGDPDNWAADVDAL 886

Query: 754  ----------------PYILNPSTI--------DTKGKTNLESLLSDNQTFNRGLIIHKL 789
                            P  L+ S +            +         N    RG   H  
Sbjct: 887  LAERRERGHGGTDVEMPAQLSVSQLVDLAADPDALAARLRRPLPFPPNPLARRGTAFHAW 946

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
            ++  F           T     +  L  A +      +   LL++  + +  +    S V
Sbjct: 947  VEQRFG---------ATRLLDFDE-LPGAADTGVGTETELALLQDAFLRSPWAD--RSPV 994

Query: 850  SVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
             V           ++ GRID +         + ++KT        E      + QL+ Y 
Sbjct: 995  EVEVPFETSVAGTVLRGRIDAVFADADGGWTVIDWKTGAEPSAANERAV---VMQLAAYR 1051

Query: 909  KILKDSY--------------PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                +                P   +     YV   +             A + T  
Sbjct: 1052 IAWAELMAARQSRLTGRPVEPPLDKVRAAFHYVRTGRTIAPEDLPDADRLARLITTA 1108


>gi|1075208|pir||D64084 helicase (EC 3.6.1.-) rep - Haemophilus influenzae (strain Rd KW20)
          Length = 698

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 118/644 (18%), Positives = 224/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 146 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 203

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 204 RTYNALDFDDLIMLPTLLFKQNEE---VRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 260

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 261 D----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 302

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 303 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 332

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 333 TIGKGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 378

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 379 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 434

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  +++E I +F              Q   ++I EL   
Sbjct: 435 NTPKREIGTATLQKLGELAQEKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 494

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L A    +       +          +    ++        E N   
Sbjct: 495 IQRSEPERAVRSMLSAIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 554

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 555 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 614

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 615 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 639

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 640 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 683


>gi|50123099|ref|YP_052266.1| DNA-dependent helicase II [Pectobacterium atrosepticum SCRI1043]
 gi|49613625|emb|CAG77076.1| DNA helicase II [Pectobacterium atrosepticum SCRI1043]
          Length = 720

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 114/722 (15%), Positives = 223/722 (30%), Gaps = 132/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  +   L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRINHLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    + + +   LK  ++    +  +   R         
Sbjct: 90  FHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLIRALNLDEKQWPPRQAMWFINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +           + +   Y+EA  +  ++DF +L++  ++L   +     +
Sbjct: 150 KDEGLRPQHIESYGNPIEQTWQRVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---V 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   +IL+DE QDT+ IQ+  I  L  D             +  VGD+ QSIY +
Sbjct: 207 LNHYRERFTNILVDEFQDTNRIQYAWIHMLAGD----------SAKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +    +               I L  ++RST++IL   + + +      G + 
Sbjct: 257 RGAQVENIQLFLKDF--------AGAETIRLEQNYRSTSNILKAANALIAHNGGRLGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +       AR +
Sbjct: 308 --------------------LW-------TEGVEGEPISLYCAFNELDE-------ARYV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I        +           KD  +L R    + ++            +       
Sbjct: 334 VNRIKAWQEKGGVL----------KDNAILYRSNAQSRVLEEAL----LQQSMPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   I+D ++  R I ++ DD +F  ++ +P     +  +  +    R    T+++
Sbjct: 380 MRFFERQEIRDSLSYLRLISNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +             +  Q  ++ I  L +       H      +        +    G
Sbjct: 440 STRVLLQEKVLAGRAAASLQRFVELIDALAYETSELPLHVQTDRAIKDSGLWSMYEQEKG 499

Query: 523 NE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +    ++ L+E +  T +   Q     L  L + L        +    AN + V++MT+
Sbjct: 500 EKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAALEAGEGQADANQDAVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VF+V     +F  +                                    
Sbjct: 560 HSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA ++L I    +     K         V +         +
Sbjct: 591 -----RLEEERRLAYVGVTRAMEKLTITYAESRRLYGKEAYHRPSRFVGELPEECVEEVR 645

Query: 698 IK 699
           ++
Sbjct: 646 LR 647


>gi|327482104|gb|AEA85414.1| exodeoxyribonuclease V beta chain [Pseudomonas stutzeri DSM 4166]
          Length = 1227

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 131/955 (13%), Positives = 280/955 (29%), Gaps = 106/955 (11%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
                      L     +     +       +                +  ++    ++++
Sbjct: 229  PADWAAQCVALEAQARAAWANDIVALEALLHSARSALNGKSYPTKTPETFDQMLGDIAAW 288

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
                + +       Q   K +         +        D   + +  ++ L    L + 
Sbjct: 289  SQGGEASSHVRKCGQARFKLNKGGAIGTHPAFRAIDAWVDHEESKQDIRAQLLLHAL-RE 347

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            +   +EE K +   + F+DL+      L+       +   I Q+    LIDE QDT  +Q
Sbjct: 348  VQGAFEEEKLRRAQIGFDDLLNRLGRALEGPS-GPRLAQTIRQQYPVALIDEFQDTDPVQ 406

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + +   +          +     LF +GD KQ+IYSF GA+    L+ +           
Sbjct: 407  YGIFGKIY-----CIGENLPDCGLFMIGDPKQAIYSFRGADIYTYLKAREA--------- 452

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
             K     L  ++RST  ++   +  F   E     +       +         G      
Sbjct: 453  TKGRHYTLGTNYRSTQAMVDAANHCFKFAEAHPRAAFRFAEEGKENPVPFE--GVDAKGR 510

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI-AYTISNMIG------TDTIFSN 365
                + + +       W    + +   ++    A  + A  I   +       +    S+
Sbjct: 511  SDTLEIEGEKQKALTLWQLQTNGVINNATYLREASEVCASAIQAWLDRSAEKPSGLRNSD 570

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            G+   ++  DI +LVR RK+      + + L      SV  +DR  + +     DL+ + 
Sbjct: 571  GQLTALKPADIAILVRSRKEA---EAIRKALARRKLASVYLSDRDSVFESEEATDLLCIL 627

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
            R       D      L +     S  D+ ++           E   +        F+ + 
Sbjct: 628  RACAQPTSDRLLRAALATRSVGISWQDLEQLNQN--------ELCWEAHVQWFRDFRVLW 679

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
            +    L  + +  +       +L  ++G ++  +         L E+L  +       ++
Sbjct: 680  QQQGVLPMLRRLLATFKVPARLLAEEQGERRLTNLL------HLAEWLQRSAAELDGEHA 733

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             ++ L  ++++          ++ + ++++TVH +KGLE P+V L    S        K 
Sbjct: 734  LIRHLAEQIKEQSEEEILRLESDSDLIKVVTVHKSKGLEYPLVMLPFACSARAVDGRSKA 793

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +     D+    +                K        E  RLLYV +TRA     IC
Sbjct: 794  PPMFHERQDEHYSLVLELAKGDP---AKPAQKRADDERMGEEMRLLYVALTRARYATWIC 850

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK----------DEWIAYEWS 715
                      S+       +      +  V    L   ++            +  A    
Sbjct: 851  VAPQGFKTGGSSIDLHKSGLGYLLAGEGTVAPDWLAEVVDAFAKGCDDIAVCKAPAQTEG 910

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
             H     P   E                +S +    +   +   S +  +  T LE+ L 
Sbjct: 911  VHVAPARPTVSEALRPLHALATNWWIASYSALAIADDRARMGAESPVAPEPATALEANLQ 970

Query: 776  D----------------NQTFNRGLIIHKLLQVIFTL----PEHKRKNFITSYCTKNAKL 815
            +                 +    G  +H L +              +    +   +    
Sbjct: 971  EQDDEQNPPAGVGIHAFPRGAGPGTFLHGLFEWAGDEGFGNAASDEQALHDAVARRCNLR 1030

Query: 816  WPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGK-INCPKKDIIIS- 865
               +    L   ++  L+ P+        +    +     E   S + +N  + D ++  
Sbjct: 1031 GWERWIDPLSAWLSHYLKAPLRFNGTQCTLAGLSTYQVEMEFWFSSRNVNVERLDALVRE 1090

Query: 866  ---------------------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
                                 G ID     +   ++ +YK++     +  ++   
Sbjct: 1091 HTLGGTPRLILAPNQLNGMFKGFIDLTFEHEGRYYVADYKSNWLGSTDSAYVAEA 1145


>gi|254493798|ref|ZP_05106969.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 1291]
 gi|268594855|ref|ZP_06129022.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|268596765|ref|ZP_06130932.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19]
 gi|268682226|ref|ZP_06149088.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332]
 gi|226512838|gb|EEH62183.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 1291]
 gi|268548244|gb|EEZ43662.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02]
 gi|268550553|gb|EEZ45572.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19]
 gi|268622510|gb|EEZ54910.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332]
          Length = 690

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 146 KEAVFKAQHQISLWKNDLKTPEDVVQTASNVWEQQTARVYASYQETLQSYQAVDFDDLIR 205

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 206 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 252

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 253 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 304

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 305 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 332

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           +  D  VL R +    +    
Sbjct: 333 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------RYADFAVLYRGKHQARIFEEA 380

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 381 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 436

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 437 LGKLNAYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGNYRAKAEIDEAGEFIN 496

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + E +++  R  +    ++ EL   +       
Sbjct: 497 SLLEEIDYENHLMQNEEGKAGEIKWRNVGELVSWFARKGERDGKNVIELAQTVALMTLLE 556

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 557 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 595

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 596 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 640

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 641 SRFIDEMPQED 651


>gi|168703681|ref|ZP_02735958.1| ATP-dependent DNA helicase [Gemmata obscuriglobus UQM 2246]
          Length = 755

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 101/705 (14%), Positives = 226/705 (32%), Gaps = 128/705 (18%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A+ L+Q ++    +  F++  +     +    K+ +            E++        K
Sbjct: 93  ARLLRQYAERLGFDRNFTIYDT---DDRNKLVKDALEAAGIDNVKFTPERI---AGAISK 146

Query: 110 IRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            +++  T   ++ T           +   YE+  +    +DF+DL+      LK+ +   
Sbjct: 147 AKNQLVTPPQYERTATDFFQKTVAAVYPRYEKRLRSANAMDFDDLLYLPAMALKQNEE-- 204

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +R ++D    +I+IDE QDT+  Q+++++ L+           +   +  VGD  QSIY
Sbjct: 205 -LRAELDSRFRYIMIDEYQDTNSAQYQIVKQLS----------INNPNVCVVGDPDQSIY 253

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + G++ K +L  +R               I L  ++RST  I+     +    +  +  
Sbjct: 254 KWRGSDIKIILDFERDFPN--------ARTITLAQNYRSTKSIIRAASVLIDHNKQRKKK 305

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                                +  +  ++ + L +       A 
Sbjct: 306 DLV----------------------------TDNPQGEPVNVITFDNGLDE-------AE 330

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I   +   T          + +D  + +R    T  +          + +     
Sbjct: 331 GVVVRIKEAVKAGT---------FKYRDHAIFMRINALTRSLESAF----VKHGVPFQIV 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                 +    +D++A  R + +  D +SF+ ++ +P     +  + K+      +   +
Sbjct: 378 KGLAFFERKENRDVLAYLRLLTNPHDGVSFLRVVNAPARGIGKVSLDKLQSFAASQEIGL 437

Query: 467 YEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                + A     K       +   + + +L        PH+   L+L            
Sbjct: 438 LAAAGQIAKITEIKGKAATGLRDFHRLMTDLRSK-MDQPPHELVRLVLDKSGYEAMLRDS 496

Query: 521 FGNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
              E    +  + E +    +  ++++  ++ + + ++     T         + V +MT
Sbjct: 497 TDEEDADRLANVSELVTAAKQFWDEDNSRTITDFLEQITLASDTDGWD--EQADHVSVMT 554

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE P V+++     +  H+                                   
Sbjct: 555 LHASKGLEFPAVYILAVEQGLLPHERSL-------------------------------- 582

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                   EE  RL +VGMTRA  +L +C         + N   +  +          V+
Sbjct: 583 --ANDEEIEEERRLCFVGMTRAMKELYLCHARMREFRGQLN---YCIVSQFIQELPRDVR 637

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
            I  + + N     A EW            +  ++ L+       
Sbjct: 638 FIDPSMARNVARTAADEWRVKSSAAAKDWADTGLRPLIPPASRKP 682


>gi|15677304|ref|NP_274459.1| ATP-dependent DNA helicase [Neisseria meningitidis MC58]
 gi|7226688|gb|AAF41807.1| ATP-dependent DNA helicase [Neisseria meningitidis MC58]
 gi|316984578|gb|EFV63543.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis H44/76]
 gi|325140608|gb|EGC63128.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis CU385]
 gi|325199937|gb|ADY95392.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis H44/76]
          Length = 671

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 203/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNIWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 285

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 286 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 313

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           Q  D  VL R +    +    
Sbjct: 314 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------QYADFAVLYRGKHQARIFEEA 361

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 362 LR----GARIPYQLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 417

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +      +  A+     +F  
Sbjct: 418 LGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQTFMDMFVSYLAKAETSEAGEFIN 477

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + + +++  R       ++ EL   +       
Sbjct: 478 SLLEEIDYENHLMQNEEGKAGEIKWRNVGDLVSWFARKGGEDGKNIIELAQTVALMTLLE 537

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 538 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 576

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 577 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEP 621

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 622 SRFIDEMPQED 632


>gi|149177760|ref|ZP_01856360.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
 gi|148843410|gb|EDL57773.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
          Length = 755

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 110/621 (17%), Positives = 207/621 (33%), Gaps = 116/621 (18%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
               +A  +   Y++   ++  +DF+DL+++   LLK       +R  +D+   +IL+DE
Sbjct: 164 HLQAVAARVYPMYQKLLLESNAVDFDDLLLHVASLLKGSPE---LRATLDERYQYILVDE 220

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+L Q+++I  L+ +           R L   GD  QSIY + GA+ + +L+ +R  
Sbjct: 221 YQDTNLAQYQIIMGLSLN----------TRNLCVTGDPDQSIYGWRGAKIENILQFERDF 270

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I L  +FRST +IL V D + S  +  +  S  +            +
Sbjct: 271 P--------DCKTIRLEQNFRSTKEILRVADDLISHNQRRKVKSLFTEN---------EE 313

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              V+L                                   A  IA  I N +       
Sbjct: 314 GSPVELLCF--------------------------QDERHEADDIARRIRNAVDQGKQ-- 345

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                  +  D  +  R    +  +          +KI           +   +KDL++ 
Sbjct: 346 -------EYTDYAIFYRVNSLSRELELAL----ARHKIPYQLAGSVAFYERTEVKDLLSY 394

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISK--- 480
            + + + +D ++F  ++  PL    +    K I        ++ E   + A+C       
Sbjct: 395 LKLVNNPDDRVAFSRIVNKPLRGIGKTTQNKLIRWADERGISLLEAAHQAADCPKLSKRA 454

Query: 481 ---FQHVIKYIHELIHIAQFCSPHDFFTLILGAK---KGRQQFISRFGNEVIDVLDEFLN 534
                   K I+    +A   S       I+ +       ++       + I  ++E L+
Sbjct: 455 ATMVARFAKMINGF-SMADSGSVAHLMENIIDSTRMVDSWKESPDEADQQRIANVNELLS 513

Query: 535 FTLRNEQ--NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
              + +      ++L+  +        T       +   V +MT+H AKGLE PVVF+V 
Sbjct: 514 TAKKYDDIYGEETTLEGFLEVSTLASATD--QLDTDAGRVTLMTLHAAKGLEYPVVFIVG 571

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+ + +                                       EE  RL +
Sbjct: 572 VEQNLIPHERVLREEFRDG--------------------------------LEEERRLFF 599

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA   L + +    S   +  +    D + +           +L  S +  +    
Sbjct: 600 VGITRAEQNLYLTQTRERSMRGRPWRTITSDFLKEIDVEFNDQSTDELFESRSHFDEFVE 659

Query: 713 EWSTHHPENTPLEREETIKQL 733
                  +   L+     + L
Sbjct: 660 SVKRGEIDTAALKAANPERPL 680


>gi|126441559|ref|YP_001058711.1| DNA helicase II [Burkholderia pseudomallei 668]
 gi|126221052|gb|ABN84558.1| DNA helicase II [Burkholderia pseudomallei 668]
          Length = 787

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 112/736 (15%), Positives = 220/736 (29%), Gaps = 161/736 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
             A    S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVAGKAGSSLASFANLIAKMRAETAQMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------ALESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++           A          
Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVETGARWGGRSDNAGWGRDWFARP 705

Query: 722 TPLEREETIKQLMDEQ 737
               R+  +   +   
Sbjct: 706 GGGARQGVVDAAVSAP 721


>gi|119947075|ref|YP_944755.1| ATP-dependent DNA helicase Rep [Psychromonas ingrahamii 37]
 gi|119865679|gb|ABM05156.1| ATP-dependent DNA helicase Rep [Psychromonas ingrahamii 37]
          Length = 669

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/666 (14%), Positives = 223/666 (33%), Gaps = 128/666 (19%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           L   +   +    +     F    +  L ++ T ++    +++ K    L  ++   ++ 
Sbjct: 89  LDIIKREVKTLGMKTGFTLFDGQDTLALLKELTEKQLKEDKDLLKA---LMSQISNWKNA 145

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            +         K  +       +  +    Y+   K    LDF+DLI+    LL  ++  
Sbjct: 146 LVLPPQAIKQAKGEREV-----IFAHCYDLYQRQLKAYNALDFDDLIVLPTLLLTHKEE- 199

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R +  + I ++L+DE QDT+  Q+E+I++L  +                VGD+ QSI
Sbjct: 200 --VRLRWQKRIRYLLVDEYQDTNTSQYELIKALVGE----------RARFTVVGDDDQSI 247

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YS+ GA P+ +L  ++   +          +++L  ++RS+  +L   + + +   +   
Sbjct: 248 YSWRGARPENLLLLQKDFPQ--------LKVVKLEQNYRSSQRVLKSANVLIANNPHEFE 299

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               S              G     + + + ++                          A
Sbjct: 300 KRLFSEL------------GYGDALKVLFANNE-----------------------QHEA 324

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            R+            +  +        KD  VL R    + L+  +        +I    
Sbjct: 325 ERVVME---------LSGHKFMNGCSFKDYAVLYRGNHQSRLLEKVMMA----NRIPYRI 371

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
           +          +KD+MA  + +++ EDD +F+ ++ +P        + K+          
Sbjct: 372 SGGTSFFARSEVKDIMAYLKLLVNHEDDNAFLRIVNTPRRGIGPTSLEKLGSYANMRHSR 431

Query: 466 VYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           ++    +           +   +   +++ +L    +     D    ++           
Sbjct: 432 LFTCSFEMGLEQTLTGKGLQSLRAFTRWLVDLNDRLKRDPAIDVVRDLIRDIGYEDWLYE 491

Query: 520 R-----FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                      +  +     +        + +   +L+++++ L       +       +
Sbjct: 492 SSPSPKAAEMGMKNVSTLFKWVTEMLKGDDLDEEMTLEQVVARLTLRDMLSRNEAEEELD 551

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V++MT+H +KGLE P V+++     +  H+                             
Sbjct: 552 QVQLMTLHASKGLEFPYVYMIGMEEGILPHQIS--------------------------- 584

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                   +++   EE  RL YVG+TRA  +L        +   ++ + T    +++   
Sbjct: 585 --------IEEDNVEEERRLTYVGITRAKKELTFTLAKERTQYGETIKPTPSRFLFELPQ 636

Query: 691 NDERVK 696
           +D   +
Sbjct: 637 DDLDWE 642


>gi|229847430|ref|ZP_04467530.1| ATP-dependent DNA helicase [Haemophilus influenzae 7P49H1]
 gi|229809668|gb|EEP45394.1| ATP-dependent DNA helicase [Haemophilus influenzae 7P49H1]
          Length = 671

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 115/644 (17%), Positives = 223/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--GAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K  ++I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRSKWQEKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +              ++I+L 
Sbjct: 233 D----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFP--------SLNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    ++       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNDHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGEGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  ++++       IQ+         Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFDAIFEFKLIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L      +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSTIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|320662029|gb|EFX29430.1| exonuclease V subunit beta [Escherichia coli O55:H7 str. USDA 5905]
          Length = 1180

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 125/877 (14%), Positives = 273/877 (31%), Gaps = 129/877 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVSAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L   +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEVLWLLLAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLNFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSV 851
                 N++          + ++    L   IT +L+ P+      ++     D   E+  
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEF 1023

Query: 852  SGKINCPK--------------------------KDIIISGRIDQISISQQNIFIFEYKT 885
               I+ P                              ++ G ID +   +   ++ +YK+
Sbjct: 1024 YLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKS 1083

Query: 886  HHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            +                    + +  Q  +Y   L  
Sbjct: 1084 NWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 1120


>gi|196228173|ref|ZP_03127040.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
 gi|196227576|gb|EDY22079.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
          Length = 678

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/598 (16%), Positives = 184/598 (30%), Gaps = 112/598 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           TLA  + A Y+   K    +DF+DL++    +L +    A +R +  +   ++++DE QD
Sbjct: 163 TLAGAVFARYQAELKTLNAVDFDDLLLLAVKVLSEH---ADVRDRWHRRFRYLMVDEFQD 219

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q E++  L +              +  VGD+ QSIY + GAE   +L  +      
Sbjct: 220 TNRLQLELVSMLAKPAEGTGG----RPNVAVVGDDDQSIYGWRGAEVSNILEFEAHFP-- 273

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +++L  ++RST  IL   + +       +                      
Sbjct: 274 ------DPVVVKLEQNYRSTNAILNTANFLIKNNPRRRPKK------------------- 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW         +                  S     A  IA  I+             
Sbjct: 309 --LWSSAGDGDKVRIVG--------------MSDDRQEAEFIANEIAQ---------RSV 343

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 ++  +L R    + L+    R L     I           D   +KDL+A    
Sbjct: 344 TESAPHEEFAILFRMNAQSRLLETNLRQL----NIPYRIIGGKSFFDRREVKDLLAYANC 399

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN------CGISK 480
           +++ +DD+S + ++ +P    S + + K       +  +V++ +   A         +  
Sbjct: 400 LVNTDDDVSLLRIINTPARGISSNTVEKATDFSAKQKCSVFDVLTNEAFRGTLTKRTVES 459

Query: 481 FQHVIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFL 533
               ++ +                    ++       +        +        L + L
Sbjct: 460 LDRFVEMLDRFETKLNTPLSDHAAVLREMMKETGYLDELKRTCKTPQEALSRETNLMDLL 519

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 +  S   L+  + E+       +    A    V ++T+H AKGLE P V+L+  
Sbjct: 520 KSFEDYQGRSSEGLRGFLDEMSLRQEREEDDDDARGTGVTLITLHAAKGLEYPHVYLIGL 579

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +  H   K                                    + T +E  RLLYV
Sbjct: 580 EEGLLPHDRSKL-----------------------------------EGTVDEERRLLYV 604

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           G+TRA   L +    +          T    + +        +           E  A
Sbjct: 605 GITRARRTLALSWCRHRIRYGSPMPCTPSSFIKELPPEWIIHRDATQILQAPVSEAAA 662


>gi|283769206|ref|ZP_06342110.1| putative ATP-dependent helicase PcrA [Bulleidia extructa W1219]
 gi|283104182|gb|EFC05561.1| putative ATP-dependent helicase PcrA [Bulleidia extructa W1219]
          Length = 710

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/545 (17%), Positives = 180/545 (33%), Gaps = 112/545 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +  +Y   +K+   LDF+DLI+ T  L  + +V   +  K  Q  ++IL+DE QD   IQ
Sbjct: 172 IYEYYLHRQKELFALDFDDLILWTVRLFDRFEV---VLQKWQQHFHYILVDEFQDIDRIQ 228

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++I+ LT              +L  VGD  Q+IY++ GA+ + ++  ++          
Sbjct: 229 YQLIKQLTG----------KDNSLLVVGDPDQTIYTWRGADVRIIVNFEKDFSN------ 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST+ IL   + V    +                              
Sbjct: 273 --TKTILLTQNYRSTSSILKGANSVIKNNKQRVDKELF---------------------- 308

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                 D+Q   +   +++  D           A  IA  + ++          + +   
Sbjct: 309 -----TDNQSKEKIYHFSAGSDE--------YQAAWIAQEMKSI----------RLKTGT 345

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             ++ VL R    +  +         D +I  +        +   +KD ++  R I+   
Sbjct: 346 YSEMAVLYRANYLSRALEKAL----MDERIPYIIYGGLRFFERQVVKDALSYLRLIV-VG 400

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETET----VYEYIQKFANCGISKFQHVIKYI 488
           DDLS   +L  P        +  I  +  E       + +  + F        +  ++ +
Sbjct: 401 DDLSLTRVLNRPKRGLGLKTVEMIAHRARELNCSQFELLQKEELFKGKTQDTIRQFVQRV 460

Query: 489 HELIHIAQF--CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                + Q       DFF L++     R    +    + +  L   +       +     
Sbjct: 461 ERWRSLQQKGGLELFDFFELVMDESGYRAFLEAEKDTDNLGHLKSLMEDIRDFSRYHPE- 519

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
              L   L+       +     ++ V++MTVH +KGLE   VF+ D    +F  +   + 
Sbjct: 520 -ATLEEYLQSVALYGDKEELVENDFVQLMTVHASKGLEFDTVFVSDLNEGIFPSERSLQE 578

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                                 EE  RL YV  TRA   L +  
Sbjct: 579 GYHG---------------------------------VEEERRLAYVAFTRARKHLYLTD 605

Query: 667 HSNTS 671
               S
Sbjct: 606 AGGYS 610


>gi|268599073|ref|ZP_06133240.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11]
 gi|268603757|ref|ZP_06137924.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1]
 gi|268684377|ref|ZP_06151239.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268686698|ref|ZP_06153560.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035]
 gi|268583204|gb|EEZ47880.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11]
 gi|268587888|gb|EEZ52564.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1]
 gi|268624661|gb|EEZ57061.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679]
 gi|268626982|gb|EEZ59382.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035]
          Length = 690

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 112/611 (18%), Positives = 205/611 (33%), Gaps = 120/611 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +++       + A Y+E  +    +DF+DLI 
Sbjct: 146 KEAVFKAQHQISLWKNDLKTPEDVVQTASNVREQQTARVYASYQETLQSYQAVDFDDLIR 205

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 206 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 252

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + +    +          +I+L  ++RSTA IL + 
Sbjct: 253 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQNYRSTARILKIA 304

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +KV                                LW Q+      +             
Sbjct: 305 NKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV----------- 332

Query: 335 SLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 +    A  +   I    +IG D           +  D  VL R +    +    
Sbjct: 333 ---ACQNEQHEADWVVSQIVKQKLIGGDKT---------RYADFAVLYRGKHQARIFEEA 380

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            R      +I    +      D   IKD+++  R + +  DD +F+  + +P     +  
Sbjct: 381 LR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVTTPKRGIGDVT 436

Query: 453 IFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           + K+         ++YE  Q         N      Q  +         A+     +F  
Sbjct: 437 LGKLNAYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGNYRAKAEIDEAGEFIN 496

Query: 506 LILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +L         +       G      + E +++  R  +    ++ EL   +       
Sbjct: 497 SLLEEIDYENHLMQNEEGKAGEIKWRNVGELVSWFARKGERDGKNVIELAQTVALMTLLE 556

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +      + V + T+H AKGLE P VFLV     V  H                     
Sbjct: 557 GKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN-------------------- 595

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            +++   EE  RL+YVG+TRA  QL +        +        
Sbjct: 596 ---------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGIWQFPEP 640

Query: 682 YDMVYDSFHND 692
              + +    D
Sbjct: 641 SRFIDEMPQED 651


>gi|221197704|ref|ZP_03570750.1| DNA helicase II [Burkholderia multivorans CGD2M]
 gi|221204738|ref|ZP_03577755.1| DNA helicase II [Burkholderia multivorans CGD2]
 gi|221175595|gb|EEE08025.1| DNA helicase II [Burkholderia multivorans CGD2]
 gi|221181636|gb|EEE14037.1| DNA helicase II [Burkholderia multivorans CGD2M]
          Length = 786

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 121/810 (14%), Positives = 229/810 (28%), Gaps = 168/810 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W +     S                ++ +   +            
Sbjct: 28  GAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTNKAAREMMARLSAMMPIDTRGMWIGT 87

Query: 66  FSLLS----SFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIK---------I 110
           F  L              PQ    + T +       L + L    +++            
Sbjct: 88  FHGLCNRMLRAHYRDAGLPQTFQILDTADQLSAIKRLMKTLNVDDEKYPPKNVQYFINNA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++        ++         L   Y++  ++  V+DF +L++   +LL      A +R
Sbjct: 148 KEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F 
Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKMLAG----------GQNAIFAVGDDDQSIYAFR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  
Sbjct: 255 GANVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLR 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + S+ +  A  I 
Sbjct: 307 TD---------AGHGEPVRVY--------------------------EASTDAQEAGWIV 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I ++I T           +   +I VL R    +  I            I        
Sbjct: 332 EEIRSLINTG----------LSRSEIAVLYRSNAQSRAIEHTL----MTSGIPYRVYGGL 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   
Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYGCSMAAA 437

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDV 528
           I        +        I ++    Q  S  +    ++ A      +   R G + ++ 
Sbjct: 438 IPYVTGKAGTSLGAFANLIAKMRAETQQMSLPETVEYVVRASGLSDFYQGEREGQDRLEN 497

Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549
           L E +N            L                                         
Sbjct: 498 LQELVNAATAFVSEEGYGLDTPARSIPLRAGAIAAPEIGAARDDASVDVLAPASLDDPAQ 557

Query: 550 -------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                  L   L             A  + V++MTVH AKGLE   VF+      +F H+
Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHE 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                    L+    EE  RL+YV +TRA ++
Sbjct: 618 NSV----------------------------------LESDGLEEERRLMYVAITRAKER 643

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +    +     ++          +   +  +    K+                     
Sbjct: 644 LYLSFAQSRMLHGQTRYNVRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFA 703

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            P    E          +P         D+
Sbjct: 704 RPGAGREQYVDAAVSAPLPAFADQQRAADV 733


>gi|332160569|ref|YP_004297146.1| exonuclease V subunit beta [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
 gi|325664799|gb|ADZ41443.1| exonuclease V subunit beta [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
          Length = 1148

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 129/991 (13%), Positives = 301/991 (30%), Gaps = 160/991 (16%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSL--SMETGNPTILKK--AQTLQQASQTQCIEER 65
            +E+    ++ +        +          ++ +G+    +   A+ L    +       
Sbjct: 155  DETILSRHQQIVVQIEAVKAQWRAAAPELEALISGSGVDKRSYSARYLPNWLEKVGSWAE 214

Query: 66   FSLLSSFFLTQKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
                      +    +++++   T++      D+   + +  ++ + +RD          
Sbjct: 215  QETGDYQLPKELEKFRQSVLFEKTKKGEAPQHDVFHTIDRIFEQPLTLRDLI-------- 266

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                      +    ++ K++   L F+DL+   +  L++      +   I       +I
Sbjct: 267  ---LARAISEIRISVQQEKRQRAELGFDDLLSKLDAALQQ-AGGELLAQSIRTRYPVAMI 322

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT   Q+ +  +L                L  +GD KQ+IY+F GA+    +R + 
Sbjct: 323  DEFQDTDPQQYRIFHTLYGG--------QEECGLLLIGDPKQAIYAFRGADIFTYIRARS 374

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                  T          L  ++RS+  ++  V+++FS+ +      +     +       
Sbjct: 375  EVSAHYT----------LDTNWRSSFPMVQSVNRLFSLVDVPFLFKQIPFINVAPAQKNK 424

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-- 360
                       +  +   +  P    W    D +       ++AR+ A  I + +     
Sbjct: 425  Q----------LSFEIKGKKQPAMSFWLQSGDGVGVSEYQQLMARQCAAQIRDWLTAGQK 474

Query: 361  ---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                + +    R +QA DI +LVR R +  L+      L      SV  ++R  + D   
Sbjct: 475  GLAQLVTATSSRPVQASDITILVRSRAEAALVRDALSTL---AIPSVYLSNRDSVFDTAE 531

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
             KDL+ L + +L+ E + +    + + +       + ++       + + +    +    
Sbjct: 532  AKDLLWLLQAVLAPEQERALRSAMATGILGLDARMLDELNHDERAWDALVDEFDGYRQHW 591

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT- 536
                + V+  + E++              +L  + G ++            L E L    
Sbjct: 592  QR--RGVLPMLREIMAQRH------LAENLLATQGGERRLTDLL------HLGELLQEAA 637

Query: 537  --LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L +E      L + I++        +    ++ + V+++T+H +KGLE P+V+L    
Sbjct: 638  SQLDSEHALIRWLAQQIAQPNHQSDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVS 697

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            +       +                          N   +     ++    E  RLLYV 
Sbjct: 698  NFRQQQDVLYHDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVA 744

Query: 655  MTRASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            +TRA          +I        E   +      +V      D +    KL       +
Sbjct: 745  LTRAVYHCSIGIAPLIKGGRKKQGESDMHLSALGYLVQQGQAGDAQYLADKLAGLAALAD 804

Query: 709  W-----IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK--------------- 748
                   A +      +    E      +    Q       +                  
Sbjct: 805  GEISVSQAGQLDETPWQPQQDELPALAARQFSRQIHDFWRVTSYSGLQQHGSSKSVASQA 864

Query: 749  ---NDINEPYILNPSTIDTKG--KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                       L+   +  +        +  +  +    G  +H LL+ +    +   ++
Sbjct: 865  LSVPLQELLPRLDTDAVGEQTLMTEPQLTPHTFPRGAAPGTFLHDLLEPL-DFSQPIEQD 923

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINC 857
            ++T    +    +  +    L   +T +++ P+      +         +E+     I+ 
Sbjct: 924  WLTEQLQQQG--FGEQWSSMLYQWLTDIVQTPLNETGVTLAQLTPQSKQAELQFYLPIDT 981

Query: 858  PKKDI--------------------------IISGRIDQISISQQNIFIFEYKTHHHVPQ 891
              +                            ++ G ID +   Q   ++ +YK++     
Sbjct: 982  LLQARELDTLIKRYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGED 1041

Query: 892  EIEHIPY---------THIAQLSIYEKILKD 913
               +             +  Q  +Y   L  
Sbjct: 1042 SSAYTHDAMAQAMAEHRYDLQYQLYTLALHR 1072


>gi|163846878|ref|YP_001634922.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222524699|ref|YP_002569170.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
 gi|163668167|gb|ABY34533.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222448578|gb|ACM52844.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
          Length = 746

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 114/692 (16%), Positives = 219/692 (31%), Gaps = 122/692 (17%)

Query: 107 FIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
             + ++     + F  T  S    +       Y++   ++  LDF+DL++ T  L ++  
Sbjct: 146 ISRAKNELVDPEAFARTARSYFDEIVARCYTRYQQLLIESNALDFDDLLVETVRLFQEHP 205

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               I +   Q    +L+DE QDT+  Q+ ++R+L E            R LF VGDE Q
Sbjct: 206 A---ILHHYHQRYRFLLVDEYQDTNRAQYLIVRALAE----------RDRNLFVVGDEAQ 252

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY++ GA+ + +L+ +               +I L  ++RST  IL     +       
Sbjct: 253 SIYAWRGADIRNILQFEHDYP--------DARVILLEQNYRSTQAILDAAQALMHASPQR 304

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +          ++  +  G+   V L+                          + S    
Sbjct: 305 K--------YAKNLWTVNGKGEAVTLY--------------------------EASDEED 330

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             + +   I  +I              +  D  ++ R    + L+            +  
Sbjct: 331 EVQFVVDEILRLIAEG---------KARPGDCAIMYRTNAQSRLVEEAL----IHAGVPY 377

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463
                    +   IKD++A  R I +  D +S   ++  P     E  + ++    R   
Sbjct: 378 YVVGGVRFYERKEIKDVLAYLRLIANPYDSVSLQRIINWPGRGIGERTVAELIAWARTLG 437

Query: 464 ETVYEYIQKFANCG----------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             +Y+ +++ A+             +      + + EL  +    +  D    +L     
Sbjct: 438 LPLYQALREIADNDAISHPFGGRARTALTEFYRLLSELHQLHGMMALSDLIDYLLNRIDV 497

Query: 514 RQQFISRFG----NEVIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSAN 568
           R    S +     ++    + E  N  L+       + L   + E+             N
Sbjct: 498 RATLYSEYDGDEADDRWRNVQELRNAALKYVNLPVETQLTAFLEEIALVADVDAIDR--N 555

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V  +T+H AKGLE P VFL+     +  H                            
Sbjct: 556 SDTVTCITLHQAKGLEFPCVFLLGIEEGLLPHSRSLD----------------------- 592

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                       + + EE  RLLYVGMTRA  +L +C  +  +   + N       + D 
Sbjct: 593 -----------NRDSIEEERRLLYVGMTRAQRRLYLCHATKRTMFGRVNIGARSRFLNDI 641

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                +    +   +I       +++ T                L   QK        ++
Sbjct: 642 PPTLVQQVHRRGYRAIPAVAGTTWQFRTSGQSEQNRRTSRNQAPLPTPQKAVFFPGQRVR 701

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
           +      I+  S +    +          +  
Sbjct: 702 HATFGEGIVVDSRLIEGDEEVTVRFADRERRL 733


>gi|153209587|ref|ZP_01947447.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat Q177']
 gi|212218647|ref|YP_002305434.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154]
 gi|120575306|gb|EAX31930.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat Q177']
 gi|212012909|gb|ACJ20289.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154]
          Length = 1110

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 146/911 (16%), Positives = 300/911 (32%), Gaps = 140/911 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIKIRD 112
               + +  +++ FLT++   +K +          ++  ++  DL  +L K+ ++     +
Sbjct: 274  DEADLWRGIATLFLTKEGLWRKKLDKNDGFPVEDKKHKQRMKDLLSQLNKN-EKLRLALN 332

Query: 113  RFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                      T          +++   L A      ++   +DF ++ +     L   + 
Sbjct: 333  EVKNCPPIAYTEKQWNIIHGLVSILPILTAQLNVIFQERNAVDFTEVTLGAIRALGDSEQ 392

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
             +    ++D++I H+LIDE QDTS+IQ+ +I  L   +          RTLF VGD  QS
Sbjct: 393  PSDYALQLDEQIQHLLIDEFQDTSIIQFHLIEKLITGWQPKDG-----RTLFLVGDPMQS 447

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  AE    L+ K            + + + L  +FRS  +++   ++ F      +
Sbjct: 448  IYRFRQAEVGLFLQVKNE-----GLGEIQLTPLILRNNFRSQKNLIDWFNQTFEPTFPKE 502

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              S   + +  H                     ++  N +  ++ S  ++     +A   
Sbjct: 503  ENSHLGSISYSH-----------------SFATNNSINQKNINFYSLLNA-----NALNE 540

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +I   I      +             K I +LVR R     IT   R       I   
Sbjct: 541  ATQIVKIIQGCRSENPE-----------KTIAILVRSRSQLIEITPALRS----ADIPFH 585

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
              +   L   + I+DL++L R +    D ++++ +L++P    +  D+  +    ++   
Sbjct: 586  AVEIEKLAHRIEIQDLLSLTRALHHLGDRIAWLALLRAPWCGLTLQDLHAVSRYANDKPI 645

Query: 466  VYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                          + G ++   +   +              +   I  A  G       
Sbjct: 646  WVALQNASEIAVLTSDGKNRINRIFSILSAAFDNRDRLLLAQWIEGIWTALGGPACLS-- 703

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHT 579
                      E +N     +             L Q    +      +  N ++IMT+H 
Sbjct: 704  -------NSTELMNTQAYFQLLETLENDFTSERLTQKLNQLYAQIDTDAKNPIQIMTIHK 756

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLI 636
            AKGLE   V L     +  S  H   + +           I  P    S+  + + + L 
Sbjct: 757  AKGLEFDHVILPGLEKRPRSDDHDLLLWLERHTKAGNNELILAPLKAASEKADPVYNYLK 816

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHND 692
            +  K+ T  E  RLLYV  TRA +   +    N  +     K   + ++ ++++      
Sbjct: 817  RIEKEKTTNEITRLLYVAATRAKESFHLLTSLNKEDPQSPIKLPPKGSFAEILWPVCQEA 876

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                 I   +++   +                   + +++L  +   P  L +    +  
Sbjct: 877  FEQSIIIFDDTLPSQKGG----------------LKLLRRLTSDWAPPFILKTLPSAESK 920

Query: 753  EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS----- 807
                  P++                     G++IH+ L+ I                   
Sbjct: 921  PLTPFTPASSK-----------------RLGIVIHETLERIANEGLESWDKERIENNKSF 963

Query: 808  YCTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKK 860
            +  +  +L  + E        ++ ++++ L +      +S      SE  ++      + 
Sbjct: 964  WQRRLIQLGTSPEQLAHYLNGIITAVSQTLCDAKGRWILSHRHNQKSEYPIT----LVED 1019

Query: 861  DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKILKDSY 915
              I    ID   I +    +I +YK+     + ++         H AQL  Y        
Sbjct: 1020 KKIKHFIIDCTFIDEAGTRWIIDYKSATPNDEPLDLFLQRQRSLHEAQLQQYANAFHALD 1079

Query: 916  PNKSLVCLLIY 926
              + +   L +
Sbjct: 1080 S-RPIKLGLYF 1089


>gi|167756539|ref|ZP_02428666.1| hypothetical protein CLORAM_02076 [Clostridium ramosum DSM 1402]
 gi|237733137|ref|ZP_04563618.1| ATP-dependent DNA helicase [Mollicutes bacterium D7]
 gi|167702714|gb|EDS17293.1| hypothetical protein CLORAM_02076 [Clostridium ramosum DSM 1402]
 gi|229383819|gb|EEO33910.1| ATP-dependent DNA helicase [Coprobacillus sp. D7]
          Length = 714

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/566 (15%), Positives = 172/566 (30%), Gaps = 109/566 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y E ++ + +LDF+DL++    + +       +  K   +  +I +DE QD   
Sbjct: 170 AKVYKEYLEYQENHFMLDFDDLLLKAVYIFENYPD---VLEKWQHKFQYIHVDEFQDVGN 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           I++ +++ +++D                VGD  Q+IYSF GA    +L   +        
Sbjct: 227 IEYRLVKLMSQDAIT-----------CVVGDPDQTIYSFRGANVNYILDFDKDF------ 269

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +    + L  ++RST +IL + + +     N                           
Sbjct: 270 --KPCKTVILDQNYRSTGNILNISNSLIRKNRNRLEKDL--------------------- 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                   ++    +   +           S    A  I   I  +I             
Sbjct: 307 ------YTEATGGSEVIHYM--------GKSEQEEADYICSQIEKIISE--------VDG 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +  +D  +L R    +  I          + I               +KD ++  + + +
Sbjct: 345 VNYRDFAILYRANYLSRTIEQSM----ISHGIDYRIFGGLKFFSRKEVKDALSYLQLVCN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
            ED L+F  ++  P     +  +  I     +   ++YE +  F++      +   + I 
Sbjct: 401 DED-LAFERIINVPARGIGKKTLENIQLVALNNQVSLYEALTLFSDQIKLSSKAKKEIIT 459

Query: 490 ELI----HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
            +             H+ F  ++              +  ID + E        +  +  
Sbjct: 460 LVKAVETAKQSSLPLHEMFENLMNDVGYIDMLKKDLEDNRIDNIHELQRSIYEFQNQN-P 518

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            +  + + L++        +  +   V +M++H AKGLE   VF++     +F       
Sbjct: 519 DIATIENYLQEISLYTDNDNLDDGQYVSLMSIHMAKGLEFDYVFVLGLSEGIFPSFRALS 578

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                                  EE  RL YV  TRA  QL + 
Sbjct: 579 ---------------------------------ESDEGLEEERRLAYVAFTRARKQLFLT 605

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHN 691
                S    S + +   +       
Sbjct: 606 DSEGFSFVTDSPKISSRFIDEIGSEG 631


>gi|115351375|ref|YP_773214.1| UvrD/REP helicase [Burkholderia ambifaria AMMD]
 gi|115281363|gb|ABI86880.1| ATP-dependent DNA helicase UvrD [Burkholderia ambifaria AMMD]
          Length = 840

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 117/748 (15%), Positives = 223/748 (29%), Gaps = 161/748 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 149 LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 202

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T         L   Y++  ++  V+DF +L++   +LL      A +R  
Sbjct: 203 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 259

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 260 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 309

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  + 
Sbjct: 310 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 361

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + S+ +  A  I   
Sbjct: 362 ---------AGHGEPVRVY--------------------------EASTDAQEAGWIVEE 386

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I T           +   ++ VL R    +  I            I          
Sbjct: 387 IRSLINTG----------MSRSEVAVLYRSNAQSRAIEHTL----MTSGIPYRVYGGLRF 432

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +FV ++  P        I ++    R    ++   I 
Sbjct: 433 FERQEVKHALAYLRLIDNPNDDTAFVRVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 492

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        I ++    Q  S  +    ++ A      +   R G + ++ L 
Sbjct: 493 YVTGKAGTSLGGFATLIAKMRAETQQMSLPETVEYVVRASGLADFYQGEREGQDRLENLQ 552

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 553 ELVNAATAFVSEEGYGLDAPARSIPLRAGAIAAPELGVDANDPSVDVLDPAPLDDPAQNP 612

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 613 DTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHENS 672

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 673 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 698

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++           A          
Sbjct: 699 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGARWGGRSDNAGWGRDWFSRP 758

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKN 749
               RE+ +   +              +
Sbjct: 759 GGGSREQVVDAAVSAPLPAFANKQRAAD 786


>gi|118590879|ref|ZP_01548279.1| DNA helicase II protein [Stappia aggregata IAM 12614]
 gi|118436401|gb|EAV43042.1| DNA helicase II protein [Stappia aggregata IAM 12614]
          Length = 812

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 111/670 (16%), Positives = 210/670 (31%), Gaps = 122/670 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E        DF DL+++   L K +     +  +  +   ++L+DE QDT++
Sbjct: 216 RKLYQEYQERLSILNAADFGDLLLHVITLFKTQPD---VLKEYQRRFRYMLVDEYQDTNI 272

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +              +  VGD+ QSIY + GAE   +LR +         
Sbjct: 273 AQYLWLRLLAQ----------GNPNVCCVGDDDQSIYGWRGAEVDNILRFEHDF------ 316

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +   +I L  ++RST+ IL     + +  E   G +  +                   
Sbjct: 317 --KGAVVIRLERNYRSTSHILAAASHLIAFNEGRLGKTLFTDF----------------- 357

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                     + +    S TS +DS  +       AR I   I ++       +      
Sbjct: 358 ---------EEPDHDLVSVTSVWDSEEE-------ARTIGDEIESLQSRGHSLNQ----- 396

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                + VLVR              L     ++          + + I+D MA  R +  
Sbjct: 397 -----MAVLVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDAMAYFRCVAQ 447

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++ +P     +  +  +    R E   + +        ++      +  + 
Sbjct: 448 PADDLAFERIVNTPKRGLGDATLKLVHGVARAERIPLMQAASQLIDTEELKPKPRNALKT 507

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            +                +   +IL      + +      E    +D L E +      E
Sbjct: 508 ALDNFERWRRQLDQMKHTELAEIILDESGYTEMWRQDRSAEAPGRLDNLKELIRSMDEFE 567

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L   LE     + R  +   + V IMT+H+AKGLE   VFL      +F H
Sbjct: 568 S--------LAGFLEHISLVMDRDSADATDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPH 619

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                  +    ++  EE  RL YVG+TRA  
Sbjct: 620 QR--------------------------------ALDESGRAGLEEERRLAYVGITRAKK 647

Query: 661 Q--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
           +  L    +       +S   + + +      + E  +            +    + +H 
Sbjct: 648 RAKLYFASNRRIHGLWQSTVPSRF-LDELPPDHVEIAEASSNYGGYGGGGYGPSRFDSHD 706

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
           P +         ++    ++                       +  +G+   +S+     
Sbjct: 707 PFDKGSYSTPGWQRAQRARQSSSGFSDGGGRGYQSARQKRQGPLTIEGELVAKSVSDTPS 766

Query: 779 TFNRG-LIIH 787
            F+ G  + H
Sbjct: 767 DFSVGERVFH 776


>gi|224369743|ref|YP_002603907.1| RecB [Desulfobacterium autotrophicum HRM2]
 gi|223692460|gb|ACN15743.1| RecB [Desulfobacterium autotrophicum HRM2]
          Length = 1242

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 146/1060 (13%), Positives = 301/1060 (28%), Gaps = 175/1060 (16%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGN-----PTILKKAQTLQQASQTQC 61
            L    S     + +W   + +  D+ +         N      ++      +      Q 
Sbjct: 226  LEQRRSAIEKARRVWQAGFKEAIDLVQKARADKTLNNNRYRPASLDTWIADMDSWVNGQG 285

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                 ++L  F  T          +++    +    + L +  D    +  +   +    
Sbjct: 286  DLPTDTVLEKFSATG----LAQGTSKKGTPPAHPAFDALDRLNDSLGSLDVKQALFAHG- 340

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                    A+ +N     AK +   + F DLI      L + D    +   I  +    +
Sbjct: 341  --------AREINDRVMAAKARLSRMGFNDLITRLGQALARPDTC--LAQLIRAQFPVAM 390

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT  +Q+ +  ++  D             LF +GD KQ+IY+F GA+    LR +
Sbjct: 391  IDEFQDTDPVQYTLFNTIYLD--------QEQSGLFMIGDPKQAIYAFRGADIHTYLRAR 442

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            +    R            L  +FRS++ ++  V+++FS        +      I      
Sbjct: 443  QDAGDRL---------YTLDKNFRSSSGMVAAVNQIFSHGAKFPLGAFLFKEMIPFDPVL 493

Query: 302  IGQVGTVQLWEQVVSQH----DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                    + E   +        Q  P  +     + S    ++AS + R +        
Sbjct: 494  AQDRDETFMVEGQAAVPMTLWQMQDGPVAKGGPDGYLSTMAGAAASEMVRLLNLGQQRPQ 553

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
            G   +  +G    +   DI VLVR   +   I      L      SV  +DR  + +   
Sbjct: 554  GAGFLQKDGSFVPLVPSDIAVLVRDVNEARHIRS---ALDLRGVRSVYLSDRESVFESQE 610

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
               L+ + +      ++ +    L +PL + S   +  +           E   + A   
Sbjct: 611  AVSLVYILKACFDPTNERAVRAALATPLLDLSLKTLETLNND--------ESAWETAVIQ 662

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
               FQ   +    L  +       D    +L    G ++  +       ++L    +  L
Sbjct: 663  FKSFQKTWRTKGVLPMVRALVFEFDVGARLLSTLAGERKLTNLLHL--GEILQA-ESAAL 719

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              EQ     L + I+  +           ++   VR++T+H +KGLE P+VFL    S  
Sbjct: 720  DGEQGVIRWLGDQIARPQISVEDDILRLESDQRLVRVITIHKSKGLEYPLVFLPFACSAR 779

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
               +    +      +  P + +            +  ++   +    E  R+LYV +TR
Sbjct: 780  KLTQANASVVTAHDPDGTPFLVVNPD---------AKALEAADQERLAEELRMLYVALTR 830

Query: 658  ASDQLII----CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +     +       +  S E  +   +    +       E  +   L N +         
Sbjct: 831  SCFACFLGIGVMGKTLKSGEVTTLHESAMGYLMAGQTMVETAQLPGLLNELKGGSDAIVI 890

Query: 714  WSTHHPENTPLEREETIKQLMDE----------------------QKIPKKLFSPIKNDI 751
                 P          +  L+                          +P+K       D+
Sbjct: 891  TPLPPPGKEMFVPGSELPSLLPARLFNGTIPNNWRITSYSGILANAAMPEKGVVAFPVDV 950

Query: 752  NEPYILNPSTIDTKGK------------------------TNLESLLSDNQTFNRGLIIH 787
              P   +   +                             +   S+    +    G  +H
Sbjct: 951  EVPDSASQDQLQEAQLQEAQIQEEQIQEQQIQMAMVSNIHSPALSIHGFPRGPEPGTFLH 1010

Query: 788  KLLQVIF----TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------- 836
             LL+             R   +                  L+  +   +  P+       
Sbjct: 1011 DLLEWAAIQGFDRVAQDRPLALDHIQRACVARGWEPWTGVLVDWLMDFVTVPLTVDGVTF 1070

Query: 837  -MTTAMSCDSYSEVSVS-----------------GKINCPKKDII--------ISGRIDQ 870
             +          E+                      +    + ++        + G ID 
Sbjct: 1071 TLADLGKQQCRPEMEFMFASHGVAVGKVDQLVCSHVLPGNLRPVLNPNRLNGMVKGFIDL 1130

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
            +   +   +I +YK++H   +             + + +  Q  +Y   L     ++ + 
Sbjct: 1131 VFCFKDRYYILDYKSNHLGDEAGAYDAAAMNQAMLGHRYDLQYVLYTLALHRLLKSRVVD 1190

Query: 922  ---------CLLIYVSE------PKVFIIPQNKLNKAFAE 946
                      + +++           F  P   L +    
Sbjct: 1191 YDYDRDLGGAVYLFLRGVNSTGQGVYFDRPPKDLIETLDR 1230


>gi|149371101|ref|ZP_01890696.1| ATP-dependent helicase [unidentified eubacterium SCB49]
 gi|149355887|gb|EDM44445.1| ATP-dependent helicase [unidentified eubacterium SCB49]
          Length = 1056

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 145/873 (16%), Positives = 303/873 (34%), Gaps = 130/873 (14%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRD-------RFNTYKMFKSTLASLTLAKYLN 134
            KN+ TQ+  K+SP+  E ++     FI+  +         +        +  L+    + 
Sbjct: 286  KNLYTQKRKKESPESIEAIESLMPLFIEAVESTTSQIPTLHFLAAILRKITPLSAINLVQ 345

Query: 135  AHYEEAKKKNCVLD---FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
               E+ K+   VL    F  +I            + +I  ++ +   H  IDE QDTS++
Sbjct: 346  QELEKIKEDQNVLPLFQFNAIINKEIK----NQPAPFIYERMGERYRHFFIDEFQDTSVM 401

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QWE +  L ++    +   S   +L  VGD KQSIY + G +P++ L             
Sbjct: 402  QWENLHPLIDNTLT-QTEDSKEGSLLLVGDVKQSIYRWRGGKPEQFLDMTNGYS---PFP 457

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQ 309
                 +  LP+++RS  ++++  +  F+   +       +D      H+ S     G V 
Sbjct: 458  SIPPKVENLPVNYRSLKEVVSFNNNFFTYVSSLFKNKTHQDLYLEGNHQKSIKENDGYVS 517

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
            L     S    +                        A +   T+ N+I            
Sbjct: 518  LSFVNSSDTKEKQEE--------------------YAEKTLSTVLNLIENG--------- 548

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 DI +L R+  D   ++         ++I VV ++  +L     ++ ++ L +  +
Sbjct: 549  -FNYGDICILTRRSADGIFLSEHLME----HQIPVVSSETLLLEQSGFVQVIVGLLKVSV 603

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY-- 487
            + +D  + V +L         D ++     + E  T +    K      + F   I+   
Sbjct: 604  NPKDKETLVLVL---------DFLYDYLEIKAEKHTFFTAFTK---ENTALFSETIQQYG 651

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            I       +  S ++    I+       +            L  F++F    E  + +  
Sbjct: 652  IDFSWEKIKESSVYESAEYIIERFGFSDK--------ADAYLFGFMDFIFEYELQAGADT 703

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               I+  ++       +  A  + V+ MT+H +KGLE PVV        ++         
Sbjct: 704  LGFIAHWDKKREKASISSGAGSDGVQFMTIHKSKGLEFPVVIFPFANVNIYKENQATTWI 763

Query: 608  IMPSLNDD--PGIPIWIPQSKSRNNIVSDLIKHLKKSTQE-EYNRLLYVGMTRASDQLII 664
             +P    +      I      +  +  +  I  L++ T + +   LLYV +TRA +QL I
Sbjct: 764  PIPETWQESFEKSLINYSSKIAGYSDAAAAIHTLREETLQLDNFNLLYVTLTRAVEQLYI 823

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               +  +N+K +  +++  +       +          ++ + E   Y + T   +    
Sbjct: 824  FSETQKTNKKDNEIKSFPKVFKGFLEAE----------NLWEGEDKEYTFGTFQKKIELK 873

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
            + ++           P +                   I            +  +  + G 
Sbjct: 874  KEDDIAVSCPSYISNPPEQH----------------DIKVITTDAKLWDTTTQKALDIGN 917

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-- 842
            ++H  ++ I    ++       +   +N       E  +L   + +++ +P++T+     
Sbjct: 918  LVHDTMEQIHH--KNDIAKVFDTIEERN--SLSKIELTSLKEIVNKIVNHPVLTSLYENF 973

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQ-ISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
              S +E  +       K   ++  R D+ +    + + I +YKT        E       
Sbjct: 974  ASSLNERDI-----ITKDHYVL--RPDRLVFHKDKTVTIIDYKTGTPNYDHEE------- 1019

Query: 902  AQLSIYEKILKDSYPNKSLVCL-LIYVSEPKVF 933
             Q++ YEK + +      +    L+Y +E  + 
Sbjct: 1020 -QINSYEKAIIEM--GFQVKEKILVYTNEEIIV 1049


>gi|295696731|ref|YP_003589969.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912]
 gi|295412333|gb|ADG06825.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912]
          Length = 1259

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 123/815 (15%), Positives = 250/815 (30%), Gaps = 105/815 (12%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
            + +D       +   + + +  +         K + T +   +       +  +     
Sbjct: 202 AVSRDALAREAKRWLQVREALLEAGRRMVEDGQKVSPTTKAYEKITRFTASWPEMEEALA 261

Query: 75  TQKF------TPQKNIITQEI--NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           +           +   + +E+        L + + K +       +      +   T   
Sbjct: 262 SWDGRVTEEWEERLRRLDKEMWSGNAPKALGDAVAKWKAAVKAAAETVQAADLPHVTEGL 321

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             L + +   YE+ K  +  LD+ DL +    LL+  +    +R      + ++++DE Q
Sbjct: 322 CRLWERVAQRYEKKKAGHRALDYTDLQLRAVRLLEDSE----VRRHWTASLRYVMVDEFQ 377

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q  ++  L +              LF VGD KQSIY F GA+    +  +R  Q+
Sbjct: 378 DTNRLQARLVGLLLD----------GGARLFVVGDGKQSIYRFRGADVSVFVETRRQVQE 427

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVF------SIPENAQGLSEDSTTTIRHRSS 300
           +          + L  +FRS   IL  V++V       S                    +
Sbjct: 428 K------GGVAVSLRHNFRSQGPILDFVNRVLGPVMGESANGENAAPPSFKIEYEPLVPT 481

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
           R    G+V++          +     E+                 AR I   +       
Sbjct: 482 REKMGGSVEIVHIDSEGLAGRLVEATEA-----------------ARWIQRFVE---SGG 521

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
           T+      R  +  D+ +L+      P+     +       +               ++D
Sbjct: 522 TVGGESGLRPARYGDVAMLLAVSTHLPVYELALQE----AGVPYRIAGSRNFFRRQEVRD 577

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET--------------V 466
           L+ + R++    D+++ +  L+SPLF  S+D +  I       +                
Sbjct: 578 LIQVLRWVYDPGDEVAMIGALRSPLFGMSDDGLTIIALATGRGKERGLLAFSADPLGWVD 637

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEV 525
                  +       +   + + +    A + S       I+         +    G + 
Sbjct: 638 GSRKLPLSPWDRRAAEDAARQVAKWRRRAAWESAGALVERIVDETGIVPTLLQTSGGRQK 697

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAK 581
            + +  F+      E     SL   +S ++                  + V +MTVH +K
Sbjct: 698 AENVRRFIEMAYEREAEGRVSLSAFLSWIQWQIEDDTDEEEARVVDGDDAVTVMTVHQSK 757

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE PVV L D           ++       +    +        +       + +   +
Sbjct: 758 GLEFPVVVLPDLARPF----RSRREMWCMDEDGALAVKWPGVGEYAGFGWYERVREGEAR 813

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-----QRTWYDMVYDSFHNDERVK 696
             +EE  R  YV +TRA D L +       ++KK        R+W+D +  S    +   
Sbjct: 814 KDREEEMRKFYVALTRARDHLALFGTRKLPSKKKDPLTVDTARSWFDWLICSLAQGDLSG 873

Query: 697 KIKLTNSINKD-EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             +L     +   W           +    R +     + E++  K              
Sbjct: 874 AEELVGRAGEGVIWTRVAAPDGAAGSIDAARPQLKDSGISEERPGK-------------- 919

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
             +P  I++       +         R  +IH +L
Sbjct: 920 --SPEVIESPDSGAQTADGQAKGAAAR--LIHHIL 950



 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 19/199 (9%), Positives = 71/199 (35%), Gaps = 10/199 (5%)

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE--HKRKNFITSYCTKNAKLW 816
            P  +    +   E          RG ++H++ +          +    +  +  +     
Sbjct: 1025 PDPLMGGDQGPAEMERVGWSPLLRGTVVHRVCERWTGAEPILDRLDQVLEEF--RLTGPL 1082

Query: 817  PAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
              +  + +   + R  +  +      +   +SE     ++   ++   + G++D+I ++ 
Sbjct: 1083 GRRAREEVREELLRYADGELSKRLNRAQHVWSEWPFYLRLQGAQRVWDLHGQVDKIFVAD 1142

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFI 934
                + ++KT+   P+ +  +   +  Q+ +Y   ++       +    L +    ++  
Sbjct: 1143 GRTVVVDFKTNRTAPEGVGALVDHYRLQVQLYAWAVER--NLAPVDEAYLYFTDPGELAP 1200

Query: 935  IPQNK--LNKAFAEISTKI 951
            +P +   + +A   +  ++
Sbjct: 1201 VPVDPGNVREALERVDARL 1219


>gi|323136051|ref|ZP_08071134.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322399142|gb|EFY01661.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 778

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 107/666 (16%), Positives = 201/666 (30%), Gaps = 121/666 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L A Y+E  K    +DF DL++ +  L ++      +  +  +   +IL+DE QDT++
Sbjct: 195 AALYALYQERLKILNAVDFGDLLLESLRLFRENPD---VLAEYQKRFKYILVDEYQDTNV 251

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R +++            R +  VGD+ QS+Y + GAE + +LR ++        
Sbjct: 252 AQYLWLRLISQ----------GRRNVCCVGDDDQSVYGWRGAEVENILRFEQDFP----- 296

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II L  ++RST  IL     + +  E+  G +                      
Sbjct: 297 ---GARIIRLERNYRSTGHILAAASHLIAHNEDRLGKTLF-------------------- 333

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                          + + T  +DS  +       AR I   I  +              
Sbjct: 334 --------TDGAAGDKVTLTGVWDSQEE-------ARVIGEDIEQLHRKSHSLE------ 372

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +I +LVR                    +           + + I+D +A  R +  
Sbjct: 373 ----EIAILVRASFQMREFEERFVE----IGLPYRIIGGPRFYERMEIRDALAYLRCVAQ 424

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQH 483
             DDL+F  ++ +P     +  +  +    R E   + +  +      +         + 
Sbjct: 425 PSDDLAFERIVNTPKRGLGDATVQMLHEYGRRERIPLMQAARVLVETEELKPKPRGALRA 484

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +I        +      H+   ++L      + +      E    L+         E+  
Sbjct: 485 LICDFDRWRELIDVKPQHELAEMVLDESGYTEMWRQDKTPEAAGRLENLKELVRAMEE-- 542

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                +L + LE     ++   +     V IMT+H AKGLE   V+L      +F H+  
Sbjct: 543 ---FPDLAAFLEHVSLVMEADEAKEQERVSIMTLHAAKGLEFETVYLPGWEEGLFPHQRS 599

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                ++  EE  RL YVG+TRA  +  
Sbjct: 600 LD--------------------------------EQGRAGLEEERRLAYVGITRAKRRAK 627

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN-- 721
           I   SN               V +   +   V +    +         +     +  +  
Sbjct: 628 IFFASNRRIRGLWQPTVPSRFVDNLPSDHVEVVEAPGGSQYGSYGVSRFANLDVYGSDYS 687

Query: 722 -----TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                       + +     +  P +   P+  D       + +   T G   L      
Sbjct: 688 TPGWKRAKAGATSARSEPARETRPSRAKQPLTIDGEVISRASTAGRYTAGARVLHLKFGP 747

Query: 777 NQTFNR 782
                 
Sbjct: 748 GTVAAV 753


>gi|298246492|ref|ZP_06970298.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297553973|gb|EFH87838.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 837

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/662 (15%), Positives = 212/662 (32%), Gaps = 92/662 (13%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + K +       +S    +   +              L ++      +++ S
Sbjct: 67  AAREMRERMEKLVGVSASKDMSIGTFHAICARVLRMEADALLPLGLNRSFVILDTDDQLS 126

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L+           +              +  ++ ++++E +         + +       
Sbjct: 127 LVKQAIRELNLDEKLYRPNA--------IHGQISRAKNEMLGPDQMAEQARKYSE----- 173

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A  +   Y+   + N  +DF+DL++ T  L ++      I  +  +   +I +DE QD
Sbjct: 174 EVAARVYKVYQRLLRANNSVDFDDLLMLTEQLWRREPE---ILQRYQRHWQYIHVDEFQD 230

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            +L Q+++IR L        +     R +  VGD+ Q IY++ GA  + V+R +R     
Sbjct: 231 CNLPQYKLIRLL---GSGTADRQEGLRNVCVVGDDDQMIYTWRGASAENVVRFERDFPH- 286

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST +IL    ++       +  +                   
Sbjct: 287 -------TKVILLEQNYRSTQNILDAAQEIVQQNRLRKQKN------------------- 320

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        +Q   ++ +    F+   +        +  A+ I  ++    +   G 
Sbjct: 321 --LW-------TAQGQGEKITIYEAFNEEMEG-------QFTAHEIIRLLARGDVGGRG- 363

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI V+ R    +  +            I           +   IKD++A  R 
Sbjct: 364 -------DIAVMYRTNAQSRALEEQF----LRMNIPYKVIGSRKFYERKEIKDMIAYLRL 412

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISK 480
           + +  DDLSF  ++  P        I ++    + +  ++YE +Q+            + 
Sbjct: 413 LANPHDDLSFERIVNVPNRKIGPKTIGELKKWTKQQGISLYEAVQRVEKHTTLGTAARNS 472

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--VIDVLDEFLNFTLR 538
            Q+  K I +L    +     +    I        +  +    E      + E       
Sbjct: 473 LQNFSKLIVDLQSAVEELPLPELLDRIAERTGYGPELRANAEEELDRWANVLELRRVAED 532

Query: 539 NEQNSYS-SLQELISELEQYPPTIKRAHSANH--------NEVRIMTVHTAKGLESPVVF 589
             +     +L+  +  +           S N         + V ++T+H AKGLE PVVF
Sbjct: 533 YSEIETPVALELFLENVALVGGADTAQTSENGALVNEEQNDSVTLITLHAAKGLEYPVVF 592

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +V        H                    +    K    + +       ++   E +R
Sbjct: 593 IVGMDEGSLPHSRSINTPEELEEERRLAYVGFTRAMKRLYLVRARRRSLWGETQYTEPSR 652

Query: 650 LL 651
            L
Sbjct: 653 FL 654


>gi|161525045|ref|YP_001580057.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
 gi|189350212|ref|YP_001945840.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Burkholderia
           multivorans ATCC 17616]
 gi|160342474|gb|ABX15560.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
 gi|189334234|dbj|BAG43304.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Burkholderia
           multivorans ATCC 17616]
          Length = 786

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 122/810 (15%), Positives = 229/810 (28%), Gaps = 168/810 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W +     S                ++ +   +            
Sbjct: 28  GAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTNKAAREMMARLSAMMPIDTRGMWIGT 87

Query: 66  FSLLS----SFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIK---------I 110
           F  L              PQ    + T +       L + L    +++            
Sbjct: 88  FHGLCNRMLRAHYRDAGLPQTFQILDTADQLSAIKRLMKTLNVDDEKYPPKNVQYFINNA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++        ++         L   Y++  ++  V+DF +L++   +LL      A +R
Sbjct: 148 KEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F 
Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKMLAG----------GQNAIFAVGDDDQSIYAFR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  
Sbjct: 255 GANVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLR 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + S+ +  A  I 
Sbjct: 307 TD---------AGHGEPVRVY--------------------------EASTDAQEAGWIV 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I +MI T           +   +I VL R    +  I            I        
Sbjct: 332 EEIRSMINTG----------LSRSEIAVLYRSNAQSRAIEHTL----MTSGIPYRVYGGL 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   
Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYGCSMAAA 437

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDV 528
           I        +        I ++    Q  S  +    ++ A      +   R G + ++ 
Sbjct: 438 IPYVTGKAGTSLGAFANLIAKMRAETQQMSLPETVEYVVRASGLADFYQGEREGQDRLEN 497

Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549
           L E +N            L                                         
Sbjct: 498 LQELVNAATAFVSEEGYGLDTPARSIPLRPGAIAAPEIGAARDDASVDVLAPASLDDPAQ 557

Query: 550 -------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                  L   L             A  + V++MTVH AKGLE   VF+      +F H+
Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHE 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                    L+    EE  RL+YV +TRA ++
Sbjct: 618 NSV----------------------------------LESDGLEEERRLMYVAITRAKER 643

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +    +     ++          +   +  +    K+                     
Sbjct: 644 LYLSFAQSRMLHGQTRYNVRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFA 703

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            P    E          +P         D+
Sbjct: 704 RPGAGREQYVDAAVSAPLPAFADQQRAADV 733


>gi|84501742|ref|ZP_00999914.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597]
 gi|84390363|gb|EAQ02922.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597]
          Length = 862

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/687 (15%), Positives = 206/687 (29%), Gaps = 118/687 (17%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+    +   +DF DL+++   + +K +    +  +  +   +IL+DE QDT++ 
Sbjct: 195 ELYDQYQRRLLELNAVDFGDLLLHVVTIFQKHED---VLAQYQRWFRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLAG----------GHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT----TIRHRSSRIGQVGT 307
                ++ L  ++RST  IL     V    E   G    +       +R      G+   
Sbjct: 296 --GAKVVRLEQNYRSTEHILAAAGGVIRGNEGRLGKELWTEAGEGWKVRLIGHWDGEEEA 353

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI--------LARRIAYT------- 352
             + E++      +    +  +    +S  QE               + +          
Sbjct: 354 RWIGEKIEDHQSGRSEEAKNRYNPRLNSFQQELDRRAKSGLGPVDEHQYVRDAFESGSVY 413

Query: 353 --------ISNMIGTDT----------IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                   +  ++  D              +         +I +LVR             
Sbjct: 414 SDMKTFNLVKQLLDRDKYSARYGNMLGALGDYVVHRFSLDEIAILVRASHQMRAFEDRF- 472

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  +           + L I+D MA  R ++S  DDL+F  ++ +P     +    
Sbjct: 473 ---LTIGLPYRVIGGPRFYERLEIRDAMAYFRLVVSPADDLAFERIVNTPKRGLGDKAQQ 529

Query: 455 KIC-TQRHETETVYE------YIQKFANCGISKFQHVIKYIHELIHIAQF--CSPHDFFT 505
           KI    R     + E              G  + + +I  +     +      S  +   
Sbjct: 530 KIQVCARDNGVPLVEGARILLAEGGIGGKGAGELRALIDNLDRWGRMTGHADLSHVELAE 589

Query: 506 LILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
            +L        + +    E    ++ L E +      +         L   LE     + 
Sbjct: 590 QVLDESGYTAMWQNDKTPEAPGRLENLKELVKALENFDN--------LQGFLEHVSLIMD 641

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
            A      +V IMT+H AKGLE P VFL      +F  +                     
Sbjct: 642 NASEDQGAKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRS------------------- 682

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                        +        EE  RL YVG+TRA +   I      +  ++   +   
Sbjct: 683 -------------MDESGPKGLEEERRLAYVGITRAEEVCTIS----FAGNRRVFGQWQS 725

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            +               LT               +    + +++  +   + +     + 
Sbjct: 726 QIPSRFIDELPGEHVEVLTPPGLYGGGFGAAAPGYDGIQSTVDKRASEANVYNSPGWKRM 785

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN 769
                +  +++P       ID +  + 
Sbjct: 786 QARAGQRPMSQPRETRSQVIDLEAVSR 812


>gi|88858638|ref|ZP_01133279.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas tunicata D2]
 gi|88818864|gb|EAR28678.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas tunicata D2]
          Length = 671

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 99/652 (15%), Positives = 203/652 (31%), Gaps = 122/652 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +  +E+ K    L     +  +    + +     +  ++          L A Y+   
Sbjct: 118 AELTEKELKKDKDQLNLLKMQISNWKNDLINPERAIR--EAQEPQKAQFALLYARYQNQL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    LL        +R +      ++L+DE QDT+  Q+ +++ L  
Sbjct: 176 RAYNALDFDDLIMVPTVLLANYPD---VRERWQNRFRYLLVDEYQDTNTSQYLLVKYLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA+P+ ++   +              +I+L 
Sbjct: 233 E----------RARFTVVGDDDQSIYSWRGAKPQNLVLLSKDFPA--------LRLIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS   IL   + + +   +       S                              
Sbjct: 275 QNYRSAGRILKAANILIANNPHVFEKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E        +         A R+   I          S+   +    KD  +L R
Sbjct: 305 -----ELAYGEQIKVIGTRDEEHEAERVIAEI---------ISHKFTKRTNYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                 +            +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQARIFEKALMA----NRIPYKISGGMSFFSRSEIKDIMAYLRLLVNQDDDNAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHI 494
            +P        + K+      +  +++    +            +  Q   +++ EL   
Sbjct: 407 NTPRREIGTTTLEKLGTFANEKHISLFAACFEPDLNHSLTGRGYNALQGFGRWVVELSDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRN----EQNSYS 545
           A      +    ++                      +  + E   +        E N   
Sbjct: 467 AVRGDTLEAVKTLVRQINYEDYLYESSPSPKAAEMRMKNVSELYRWITDMITGNEDNPPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L E++++L       +       + V+++T+H +KGLE P VF+V     +  H+    
Sbjct: 527 TLAEVVTKLTLRDMMERNEGEDESDAVQLLTLHASKGLEYPYVFMVGMEEGLLPHQVSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              +   +E  RL YVG+TRA  +LI  
Sbjct: 587 -----------------------------------EDNVDEERRLAYVGITRAQQELIFT 611

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                    +++       V +   +D   +  +  +S  +          +
Sbjct: 612 YAKVRRQFGETSNTEISRFVQELPQDDLAYESRQQPSSQAERMEKGQARVAN 663


>gi|253701545|ref|YP_003022734.1| UvrD/REP helicase [Geobacter sp. M21]
 gi|251776395|gb|ACT18976.1| UvrD/REP helicase [Geobacter sp. M21]
          Length = 678

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/599 (15%), Positives = 193/599 (32%), Gaps = 120/599 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +A  +   Y+ A K    +DF+D+I+ T +LL++      +     +   +I++DE QDT
Sbjct: 168 MAGLVYPRYQSALKAFNAIDFDDIIMLTAELLEQHP---PVLKHWQERFRYIMVDEYQDT 224

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ ++  L                L  VGD+ QSIY + GA+   +L  ++      
Sbjct: 225 NSSQYLLVNLLAAGC----------GNLCVVGDDDQSIYGWRGADVGNILDFEKDF---- 270

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               +    I+L  ++RST +IL   + V    +  +                       
Sbjct: 271 ----KGCRTIKLEQNYRSTGNILEAANSVIGNNKVRKAKR-------------------- 306

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW        +             D   +       A  +   I              K
Sbjct: 307 -LW-------TASGEGPLIDLCIVQDDEEE-------ATSVVERIQ---------LERYK 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +        +L R    +       RF      I  V        +   +KD ++  + I
Sbjct: 343 KDAPYSQFAILYRTNAQSRAFEEQLRFE----DIPYVLVGGTQFFERKEVKDSLSYLKVI 398

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKF 481
            +  D+++ + ++  P     +  + +I      +   ++E   +       ++    K 
Sbjct: 399 ANSLDEVALLRIVNFPKRGIGDSTVIRINQWSLEKEIPLFEAFSRVEEIEGISDVIKDKV 458

Query: 482 QHVIK-YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-----EVIDVLDEFLNF 535
           +      +             +    +    K  ++      +       ++ +++ +N 
Sbjct: 459 RAFHHTLLDAAEAFKGEGGLAEKGKALFEKLKIEEEIFRTIDDAKAARRKVENVEQIINS 518

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLV 591
               E+    ++L   I ++                  + V +M++H++KGLE P VFLV
Sbjct: 519 MSAYEERVPEATLGGFIEKVSLMDEDRFSGKDKKDHGKDAVTLMSLHSSKGLEFPFVFLV 578

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  HK                                      +  + +E  RL 
Sbjct: 579 GMEDEILPHK----------------------------------RAIYEDDSIDEERRLC 604

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           YVG+TRA  QL++ +        K  +R     + +       V++  +   +  +E  
Sbjct: 605 YVGITRARQQLVMTRTLFRKKYGKLEERVPSRFLDEIPGGVLNVQQSGVVKEVTPEEAE 663


>gi|108563860|ref|YP_628176.1| DNA helicase II [Helicobacter pylori HPAG1]
 gi|107837633|gb|ABF85502.1| DNA helicase II [Helicobacter pylori HPAG1]
          Length = 682

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 98/572 (17%), Positives = 187/572 (32%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 159 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSEHYHYIMVDEYQDTNALQL 215

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 216 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 257

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +  S           G   +V   E 
Sbjct: 258 GAKVVKLETNYRSSAEILACANSLISHNQHRHVKTLQS---------FKGSHKSVICKEY 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           +  + +S                            +AY I  ++       N        
Sbjct: 309 LTQKEESLD--------------------------VAYQIKALLKKGENLEN-------- 334

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 335 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHVVAKKDD 388

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K         +  + 
Sbjct: 389 RFFIKRVLNKPPRGLGKITQEWIFSLLDDEGLNLEEALKLGAFKDKLNPKNEYALKKFMA 448

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F    L      + +       E    + E L     + + + +
Sbjct: 449 MIGRLRE-AFEISVEEFCARFLEETNLLKSYEKEDNYEEREGFVKELLTLLKEHFKTNPT 507

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +    +    + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 508 --HSLLDFLNESVLDVHN--AENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 558

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 559 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 588

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 589 YVKERSYFGRKISCSPSVFLEEAQLLQQDKPP 620


>gi|291280321|ref|YP_003497156.1| ATP-dependent DNA helicase PcrA [Deferribacter desulfuricans SSM1]
 gi|290755023|dbj|BAI81400.1| ATP-dependent DNA helicase PcrA [Deferribacter desulfuricans SSM1]
          Length = 683

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/548 (18%), Positives = 176/548 (32%), Gaps = 118/548 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y E  K++ ++DF+D++  T  L  +      I         +IL+DE QDT+ I
Sbjct: 168 DVFYLYNEELKRSALIDFDDMLSLTLRLFYEN---KDILQFYSHLFEYILVDEFQDTNNI 224

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E +++L                +  VGD+ QSIY + GAE   ++   +  +      
Sbjct: 225 QFEFLKAL----------RILKDKICVVGDDDQSIYGWRGAEVGNIVFFDKYFKN----- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II L  ++RS   IL + + + S  +  +G S      I                
Sbjct: 270 ---TKIIRLENNYRSAPKILYLANNLISNNKFRKGKSLKPEINI---------------- 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                         +    S  D   +       A  +   I  ++             I
Sbjct: 311 ------------DAEILLNSCLDEKDE-------ANFVVKKIEKLVQE---------YSI 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VL R    +           N   I               IKD+++  RF  ++
Sbjct: 343 PLNEIAVLYRTNAQSRNFEVAL----NHKNIPYQVIGSISFYQRKEIKDILSYLRFYNNK 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-----ETVYEYIQKFANCGISKFQHVIK 486
            D  S +  LK+P     +  I +I    +E      +++     K       + Q+ I 
Sbjct: 399 FDTTSMIRALKNPPKGIGDKTIAQIIEIMNEKNLSAYDSIVLLTSKKTAAASKRLQNFID 458

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLDEFLNFTLRNEQN 542
            I  +          D    I+                + D     ++E +N  +  E++
Sbjct: 459 IIDGIKQ---HTKISDMIKHIVDKTDYINHIKKTEDIFMADNRIYNINELINSAVSYEES 515

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + +    L   L             ++  V++MT+H+AKGLE   VFLV     +F    
Sbjct: 516 TEN--ISLTDFLATTTLQTSTD-EMDNGSVKLMTLHSAKGLEFEAVFLVGLEDGLFP--- 569

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                +    EE  RL YVG+TRA   L
Sbjct: 570 -------------------------------LFSSMDEDEKLEEERRLCYVGITRAKRFL 598

Query: 663 IICKHSNT 670
            +    + 
Sbjct: 599 YLTYAKSR 606


>gi|237811975|ref|YP_002896426.1| DNA helicase II [Burkholderia pseudomallei MSHR346]
 gi|237506796|gb|ACQ99114.1| DNA helicase II [Burkholderia pseudomallei MSHR346]
          Length = 787

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/736 (15%), Positives = 220/736 (29%), Gaps = 161/736 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
             A    S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVAGKAGSSLASFANLIAKMRAETARMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------ALESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++           A          
Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFARP 705

Query: 722 TPLEREETIKQLMDEQ 737
               R+  +   +   
Sbjct: 706 GGGARQGVVDAAVSAP 721


>gi|147921573|ref|YP_684610.1| putative ATP-dependent DNA helicase [uncultured methanogenic
           archaeon RC-I]
 gi|56295579|emb|CAH04821.1| ATP-dependent DNA helicase [uncultured archaeon]
 gi|110620006|emb|CAJ35284.1| putative ATP-dependent DNA helicase [uncultured methanogenic
           archaeon RC-I]
          Length = 1075

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 149/972 (15%), Positives = 286/972 (29%), Gaps = 157/972 (16%)

Query: 7   LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           L   ES   I +    L       I     L  E G P     +  +    + + +   +
Sbjct: 102 LVAGESDTGIDERYRLLDEKDGGFI-----LCKEAGVP-PRLASHYITSIQRAKDMGLTW 155

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           +    +    + + ++    ++I   +     +L+  Q +  + R+       F      
Sbjct: 156 ADYEGYLGQLEASMREICPEEDIESAAGAATVRLRTEQFKDKQAREEKKKITEFLELFEE 215

Query: 127 LTLAKYLNAH---YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                        YE+ K +  +LD+ D+I  T          A     +  + +++++D
Sbjct: 216 YKGYLKFLEAWKKYEQIKAQKLLLDYADMIRLTI-----DYARARGHEVLADKFDYVIVD 270

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q+E+++ L  D           + +  VGD  QSIY F GA P+ +   K  
Sbjct: 271 EFQDTNRQQYELLKILAGD----------GKGITVVGDVNQSIYGFRGAYPENIDTFKEE 320

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
            +          +  +L  ++RST  IL    ++           + +      ++    
Sbjct: 321 YR---------PATFDLTENYRSTDSILRTAYRLIRNN------YQKADDARLLQAFDHR 365

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
           +   V L + +                               ARRI   I  ++      
Sbjct: 366 EGTRVMLLKTLNQNE--------------------------QARRIVEEIDRLLAEG--- 396

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                  +  ++I VL R       I    +       I    +          I+  +A
Sbjct: 397 -------VAPEEIAVLFRSYSSLRPIEAALK----QRAIPYQVSTTTGFLKRPEIRTALA 445

Query: 424 LGRFILSQEDDLSF----VCMLKSPLFNFSEDDIFKICTQRH----ETETVYEYIQKFAN 475
               + S E            L    +  S  D+  +         +        +  + 
Sbjct: 446 YLYVLASLEMPRHGADQLWYKLLQYRYGVSIRDVHLLSAAAKRDSIQGVLTGSLPRGLSE 505

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEF 532
            G  K +H++  I EL        P D    I       ++F     +E       L   
Sbjct: 506 EGRVKIRHLVDRIMELRASTNKELP-DLLLDIYELSGLSREFTHDNSSESKTSLLNLKAL 564

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPP---TIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +     +    + LQ  I  +E         +         V + T H AKGLE   VF
Sbjct: 565 HDIVTGFQDLYGTDLQGFIEYVELLDEIGDDGELPRQEKAGGVVLKTCHGAKGLEYSHVF 624

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +VD     F      +  ++P   +D    ++         I   L K  +    +E  R
Sbjct: 625 VVDLAKDKFPLSRGGREPLVPDQLNDRYADVFSLP---EAEIEEALKKRKQDFKLKEERR 681

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YV  TRA D+L +C  ++    ++       +  Y+S      ++ ++          
Sbjct: 682 LAYVAFTRAKDRLYLCYPASYGESERPPSMFIAEACYNSGELHPDMELVEDAEEKAAVAT 741

Query: 710 IAYEWSTHHPENT---------------------------------PLEREETIKQLMDE 736
              +      E                                   P       +  +  
Sbjct: 742 RDSDLDRKKNEIKRQILSTIDSEPDLALYNLLLYQHLCGRPIAINCPQAAMAGEEAAVIR 801

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL-------------SDNQTFNRG 783
            ++   +   ++ D  E   L+ S + T  +   +  L                   + G
Sbjct: 802 AELDAGIPRGMQFDPKE-VRLSYSGLKTYEECPKKYELQYLLNIPSRTKDSEGESPLSFG 860

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
             IHK L++        R+  + +   K + L              R+ +  +       
Sbjct: 861 NYIHKTLELAVKQQISTREE-LDAIAEKTSLLPDFAGVDK--DKAKRIFD--VFWARNKD 915

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISI--SQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
                V V    N        +G+ID++       +  I +YKT      E         
Sbjct: 916 TIRRSVGVEQFFNFTMDGFQFTGKIDRVDQLSENGDAEIIDYKTGREPGTEDRE------ 969

Query: 902 AQLSIYEKILKD 913
            Q+++Y   L+ 
Sbjct: 970 RQITMYMLALQR 981


>gi|237744963|ref|ZP_04575444.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 7_1]
 gi|229432192|gb|EEO42404.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 7_1]
          Length = 735

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 114/596 (19%), Positives = 194/596 (32%), Gaps = 117/596 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K I+   +  ++  +       +D    I       K              +   Y  A 
Sbjct: 117 KRIVKAILKGQNLSINGVKLTERDLVSMISKIKEQIKTLDEYSVMNKQIVEVYDKYNRAL 176

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            ++  +DF D+++NT  LL+K +    I  K+  +  +I+IDE QDT+ +Q+++I  +  
Sbjct: 177 LESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNLQYKIIDLIAR 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                         L  VGDE QSIY F GA    +L  +               II+L 
Sbjct: 233 ----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYNN--------AKIIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   +++    ++++                        LW          
Sbjct: 275 ENYRSTTTILDAANELIKNNKSSKDKK---------------------LW-------TQN 306

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                    +  ++  + S       RI   I                 I  +D+ +L R
Sbjct: 307 GKGDLIKVLACDNARDEVS-------RIIEIIKENHQNG----------IAYRDMTILYR 349

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L           Y I               IKD++A    I++ +D+L+   ++
Sbjct: 350 TNAQSRLFEEGF----LRYNIPHKVFGGISFYSRAEIKDIIAYLSIIVNPQDELNLQRII 405

Query: 442 KSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494
             P     E  I KI    R     + E +            G  K   +   I EL  +
Sbjct: 406 NVPKRKVGEKGIEKIITYARENNLNLLEALSHIKEISGLTVVGKEKLLEMYDIIKELKDL 465

Query: 495 AQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
           +   +       ++   K               I+ +DEF N  L  E  +      L  
Sbjct: 466 SYTETASYIVQTLIDKIKYIDYIKENYSDAEARIENIDEFKNSILELE--NVVGELRLNE 523

Query: 553 ELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            LE     +         + V++MT+H +KGLE P+VFLV   +++F             
Sbjct: 524 YLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGS---------- 573

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                       ++   EE  RL YV +TRA  +L +   
Sbjct: 574 ------------------------RAMFEEKEMEEERRLCYVALTRAEKKLYLSHA 605


>gi|85059951|ref|YP_455653.1| exonuclease V subunit beta [Sodalis glossinidius str. 'morsitans']
 gi|84780471|dbj|BAE75248.1| exodeoxyribonuclease V beta subunit [Sodalis glossinidius str.
            'morsitans']
          Length = 1180

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 124/875 (14%), Positives = 267/875 (30%), Gaps = 126/875 (14%)

Query: 106  EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
            E       F  ++     L  +     +    E+ K++   L F+DL+   +  L  R  
Sbjct: 306  ELFAAVQAFYQHRTSLRDLIFVMALAEMRQALEQEKQRRAELGFDDLLNRLDRALAGRG- 364

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +   +       +IDE QDT   Q+ + R +                L  +GD KQ+
Sbjct: 365  GEALAESVRSRYPVAMIDEFQDTDPQQYRIFRHVYGG--------KPDCALLLIGDPKQA 416

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY+F GA+    +R +       T          L  ++RS   ++  V+++F       
Sbjct: 417  IYAFRGADIFTYMRARSEVDAHYT----------LYTNWRSAPGMINAVNQLFQSLPAPF 466

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              S      +    S       V+              P    W      +        +
Sbjct: 467  IFSAIPFLPVAAAESNACLRLVVERQP----------QPALRVWLQPGAGVGVSEYQQCM 516

Query: 346  ARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
             ++ A TI + +         +     ++ +QA DI VLVR R +  L+      L    
Sbjct: 517  VQQCAATIRDWLDAAREGEAWLEGRRGRQPLQASDITVLVRNRHEAALMRDALAALMIPA 576

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
               V  ++R  + D    ++L+ + + +L+ E D +    L + L  F    I  +    
Sbjct: 577  ---VYLSNRDSVFDTPEARELLWILQAVLTPEKDTALRTALATGLLGFDAVAIDALNND- 632

Query: 461  HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                   E   +      + ++   +    L  + Q    H     +L ++ G ++    
Sbjct: 633  -------ERRWEQRVEEFAGYRQRWQKSGVLPMLRQMMMNHRIAENLLASQGGERRLTDV 685

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---SANHNEVRIMTV 577
                    L E L       +N Y+ ++ L  ++    P          ++ + V+I+TV
Sbjct: 686  L------HLGELLQEASTQLENEYALVRWLALQIASPNPQAANQQLRLESDRHLVQIITV 739

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KG E P+VFL          + +                     +        + ++
Sbjct: 740  HKSKGREFPLVFLPFAADFRVQKRPLFHDR-------------EAYGAWLDLRAAQESLR 786

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIIC------KHSNTSNEKKSNQRTWYDMVYDSFHN 691
              ++    E  RLLYV +TR+     +            +     +      ++    + 
Sbjct: 787  LAEEERLAEDLRLLYVAVTRSIYHCSLGIAPLYRGSRKKTGASDLHLSAPGYLIQQGQNG 846

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN-- 749
            D    +  L    ++ +              PL       Q +  ++ P+    P +   
Sbjct: 847  DADDLRECLAALASRADGDIVLCEAQAAPAQPLTPAAAPAQALSARRWPEPPCDPWRVTS 906

Query: 750  -------------DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
                         ++     ++ +    + +T   +  +  +    G  +H L + +   
Sbjct: 907  YSGLQRHGSSVVMELQPRLDIDAAGEGRQQETLQLTPHTFPRGAAPGTFLHGLFETLDFN 966

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LE--NPMMTTAMSCDSYSEVSVSG 853
                 +        +   +       + +  I  + L+  +  +         +E+    
Sbjct: 967  RPLDPQWLSEQLAQQGIDVVWLPVITDWIEKIIAMPLDGGSLSLARLTPDSRQAELQFYL 1026

Query: 854  KINCPKKDI--------------------------IISGRIDQISISQQNIFIFEYKTH- 886
             I+   +                            ++ G ID +   Q   ++ ++K++ 
Sbjct: 1027 PIDALVQARDLDQICKRYDPLSARCPALDFPQIKGMLKGFIDLVFRWQGRYYLLDHKSNW 1086

Query: 887  --------HHVPQEIEHIPYTHIAQLSIYEKILKD 913
                         E   I + +  Q  +Y   L  
Sbjct: 1087 LGEESAAYTRPAMEQAMIAHRYDLQYQLYTLALHR 1121


>gi|15965897|ref|NP_386250.1| DNA helicase II protein [Sinorhizobium meliloti 1021]
 gi|307308207|ref|ZP_07587916.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
 gi|307319674|ref|ZP_07599099.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
 gi|15075166|emb|CAC46723.1| Probable DNA helicase II [Sinorhizobium meliloti 1021]
 gi|306894605|gb|EFN25366.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
 gi|306901205|gb|EFN31811.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
          Length = 857

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 117/709 (16%), Positives = 208/709 (29%), Gaps = 150/709 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y+         DF DL+++   + +       +  +   +  +IL+DE QDT+ 
Sbjct: 211 RELYAAYQNRLLTLNACDFGDLLLHPIRMFRANPD---VLKEYHAKFRYILVDEYQDTNT 267

Query: 191 IQWEVIRSLTE-------------------------------------DFFVGKNTHSSP 213
            Q+  +R L +                                     +   G+      
Sbjct: 268 AQYMWLRLLAQQTQASRNRPSSGLPATFSPSDGEKGQAARSQSPLSPSERGEGRGEGQPT 327

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             +  VGD+ QSIY + GAE   +LR ++              +I+L  ++RST  IL  
Sbjct: 328 VNICCVGDDDQSIYGWRGAEVDNILRFEKDFP--------GAKVIKLERNYRSTEHILGA 379

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
              + +  E   G +  +  T                            + ++    + +
Sbjct: 380 AAHLIAHNEGRLGKTLFTERT--------------------------NPDDEKVHVHAAW 413

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           DS  +       AR I   I  +                  DI +LVR            
Sbjct: 414 DSEEE-------ARAIGEEIEQLQRKKH----------NLNDISILVRASFQMREFEDRF 456

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
             L     ++          + L I+D MA  R +    DDL+F  ++ +P     E  +
Sbjct: 457 VTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGETTV 512

Query: 454 FKIC-TQRHETETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTL 506
             +    R     +             K         V+        + +     +    
Sbjct: 513 RTLHDYARARDIPMLAAASDIVETDELKPKARKGLFDVVADFRRWQTLLETTPHTELAER 572

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           IL        + +    E    ++ L E +      E         +   LE     +  
Sbjct: 573 ILDESGYTAMWQADKSAEAPGRLENLKELIRSMEAFES--------MRGFLEHVALVMDA 624

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             + N + V IMT+H+AKGLE   VFL      +F H+                      
Sbjct: 625 EQNENMDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQR--------------------- 663

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK---KSNQRT 680
                       +    ++  EE  RL YVG+TRA  +  I   SN         +    
Sbjct: 664 -----------ALDEGGRAGLEEERRLAYVGITRAKRRCHIWFVSNRRIHGLWQSTLPSR 712

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
           + D +  +       +               ++ +     N      +  +Q   E    
Sbjct: 713 FLDELPIAHVEVAEQEVSYGGYGRGGYGQSRFDKADPFENNYQTPGWKRAQQHRSEATRD 772

Query: 741 KKLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLSDNQTFNRG-LIIH 787
                         Y  + P T   +G+   +S  ++   FN G  + H
Sbjct: 773 NWGTRSGHAIERIGYGESGPRTRTIEGELVAKSTSAEPSRFNVGDRVFH 821


>gi|254198264|ref|ZP_04904686.1| DNA helicase II [Burkholderia pseudomallei S13]
 gi|169655005|gb|EDS87698.1| DNA helicase II [Burkholderia pseudomallei S13]
          Length = 787

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/736 (15%), Positives = 220/736 (29%), Gaps = 161/736 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
             A    S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVAGKAGSSLASFANLIAKMRAETARMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------ALESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++           A          
Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFARP 705

Query: 722 TPLEREETIKQLMDEQ 737
               R+  +   +   
Sbjct: 706 GGGARQGVVDAAVSAP 721


>gi|83816263|ref|YP_444681.1| ATP-dependent DNA helicase pcrA [Salinibacter ruber DSM 13855]
 gi|83757657|gb|ABC45770.1| ATP-dependent DNA helicase pcrA [Salinibacter ruber DSM 13855]
          Length = 786

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/609 (15%), Positives = 199/609 (32%), Gaps = 118/609 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   YE A K+   LDF+DL++   +L ++ +    +  K      ++ IDE QD
Sbjct: 188 EIVAEVYPAYERALKQANALDFDDLLLKPIELFEQHED---VLEKYQTRWQYVHIDEYQD 244

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ + R L+             + L  VGD+ QSIY+F GA+   +L         
Sbjct: 245 TNQAQYVLARKLSA----------RHKNLCVVGDDAQSIYAFRGADITNILNFDNDYP-- 292

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I L  ++RST +I+ + D +    ++    S                   
Sbjct: 293 ------DATTIRLERNYRSTENIIRLADSIIEENDDQIEKS------------------- 327

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           +  +  + +  ++L ++      A++I   + ++   D       
Sbjct: 328 --LW----------TDNAEGEYVALMEALSEKDE----AQKIERRVRDLHLRD------- 364

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              ++  D  VL R    +  I    R       +           +   IKD++A  + 
Sbjct: 365 --GMEYGDFAVLYRTNAQSRAIEEALR----KENVPYRVIGGTSFYERKEIKDVLAYLKL 418

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISK 480
           +++  D  S   ++  P     +    ++    +  + ++++ +++              
Sbjct: 419 LVNPNDTASLQRVINYPTRGIGDKTQARLQRYAQQHSLSLWQAVERVEEIETLGTRAERA 478

Query: 481 FQHVIKYIHELIHIAQFCSP--HDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                + I      A   S    +    ++       +       E     + + E ++ 
Sbjct: 479 VGKFRRLIARYASKAGTGSVPADELARDLIQDAGLLSELRKEHTRENLQRWENVQELISA 538

Query: 536 TLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E    +++   + E+               ++V +MT+H AKG E PVVF+    
Sbjct: 539 LAEYVESTEDATISTFLQEVALMTDQD--EAEEGDDKVTLMTLHAAKGTEFPVVFVAGLE 596

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F  +                                      +K+  EE  RL YVG
Sbjct: 597 EGLFPLEQ----------------------------------ATQEKAELEEERRLFYVG 622

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +TRA ++L +    +     +    T    + +   +  R +                  
Sbjct: 623 VTRAEERLYLSWARSRYRYGEQTSNTRSRFLEEVDSDVVRTEAGGELEQQTDRFSAEEGP 682

Query: 715 STHHPENTP 723
           S  + E  P
Sbjct: 683 SADYDEMDP 691


>gi|37528453|ref|NP_931798.1| DNA-dependent helicase II [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787891|emb|CAE17008.1| DNA helicase II [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 720

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/531 (17%), Positives = 181/531 (34%), Gaps = 82/531 (15%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I         +IL+DE QDT+ 
Sbjct: 171 QKIYQAYQEACDRAGLVDFAELLLRAHELWLNKP---QILQHYRGRFTNILVDEFQDTNS 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  I  L  +             +  VGD+ QSIY + GA+ + + R  +        
Sbjct: 228 IQYAWIHLLAGE----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLKDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL V + + +   +  G +                     L
Sbjct: 273 ---GAETIRLEQNYRSTSNILKVANTLIANNSDRLGKN---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W             +  S    F+ L +       AR +   I N +             
Sbjct: 309 W-------TDGVEGEPISLYCAFNELDE-------ARYVVSRIKNWLENGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              K+  +L R    + ++            +           +   IKD +A  R I +
Sbjct: 348 ---KNCAILYRSNAQSRVLEEAL----LQASMPYRIYGGQRFFERQEIKDALAYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R   +T+++  Q             +  Q 
Sbjct: 401 RHDDAAFERVVNTPTRGIGDRTLDIVRQAARERQQTLWDCCQILLQEKVLAGRAAASLQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
            I+ I  L    +    H     I+     R  +    G +     + L+E +  T +  
Sbjct: 461 FIELIDALSTETEDMPLHVQTDRIIRDSGLRAMYQQEKGEKAQARIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            Q+   +   L + L        +    A  + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YQDEDENFTPLQAFLSHAALESGEGQADAYQDSVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
             +   +                    +      ++  +   K      +R
Sbjct: 581 PSQMSIEEGGRLEEERRLAYVGLTRAMEKLTITYAESRRLYGKEVYHRPSR 631


>gi|256028421|ref|ZP_05442255.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11]
          Length = 737

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/546 (19%), Positives = 182/546 (33%), Gaps = 117/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y     ++  +DF D+++NT  LL+K +    I  K+  +  +I+IDE QDT+ +
Sbjct: 169 EVYDKYNRVLLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 224

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +          
Sbjct: 225 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFETNYNN----- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST  IL   +++    ++++                        LW
Sbjct: 270 ---AKIIKLEENYRSTTTILDAANELIKNNKSSKDKK---------------------LW 305

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              +  ++  + S       RI   I                 I
Sbjct: 306 -------TQNGKGDLIKVLACDNARDEVS-------RIIEIIKRNHQNG----------I 341

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D+ +L R    + L           Y I               IKD++A    I++ 
Sbjct: 342 AYRDMTILYRTNAQSRLFEEGF----LRYNIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 397

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHV 484
           +D+L+   ++  P     E  I KI    R     + E +            G  K   +
Sbjct: 398 QDELNLQRIINVPKRKVGEKGIEKIITYARENNLNLLEALSHIKEISGLTVVGKEKLLEM 457

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQN 542
              I EL  ++   +       ++   K               I+ +DEF N  L  E  
Sbjct: 458 YDIIKELKDLSYTETASYIVQTLIDKIKYIDYIKENYSDAEARIENIDEFKNSILELE-- 515

Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      L   LE     +         + V++MT+H +KGLE P+VFLV   +++F   
Sbjct: 516 NVVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGP 575

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                 ++   EE  RL YV +TRA  +
Sbjct: 576 ----------------------------------RAMFEEKEMEEERRLCYVALTRAEKK 601

Query: 662 LIICKH 667
           L +   
Sbjct: 602 LYLSHA 607


>gi|229845640|ref|ZP_04465765.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
 gi|229811440|gb|EEP47144.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1]
          Length = 670

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 116/644 (18%), Positives = 223/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRAKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 E----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGEGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  +++E I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQKKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L      +       +          +    ++        E N   
Sbjct: 467 IQRSEPERALRSMLSTIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|192360051|ref|YP_001984019.1| DNA-dependent helicase II [Cellvibrio japonicus Ueda107]
 gi|190686216|gb|ACE83894.1| DNA helicase II [Cellvibrio japonicus Ueda107]
          Length = 769

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 106/606 (17%), Positives = 193/606 (31%), Gaps = 123/606 (20%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      + ++    +     +   YEE   +  V+DF +L++  ++L   +     I  
Sbjct: 190 EGLRPQHIEETADPFVRTMLSIYRAYEEDCARAGVVDFAELLLRAHELWLNKPH---ILE 246

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              Q    IL+DE QDT+ +Q+  +R L                + AVGD+ QSIY + G
Sbjct: 247 HYRQRFPFILVDEFQDTNSVQYAWLRVLAG----------KESVVTAVGDDDQSIYGWRG 296

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + + +                 +I L  ++RST +IL   + V +      G     
Sbjct: 297 AKIENIRQFSEDFPN--------TQLIRLEQNYRSTGNILHAANAVIAHNYGRLGK---- 344

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                             LW             +  S  + F+   +       AR I  
Sbjct: 345 -----------------DLW-------TQGAKGEPISLYAAFNEQDE-------ARFIVE 373

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I + +      +             +L R    + ++            I         
Sbjct: 374 RIQSWVKQGKAKNT----------CAILYRSNAQSRVLEEAL----LREAIPYRIYGGQR 419

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470
             D L IK+ +A  R I ++ DD +F  ++ +P        +  I    R +  ++++  
Sbjct: 420 FYDRLEIKNAIAYMRLISNRHDDAAFERVINTPTRGIGGKTVDDIRLFAREQGCSLWQAC 479

Query: 471 ------QKFANCGISKFQHVIKYIHELIHIAQFCSPH------DFFTLILGAKKGRQQF- 517
                 +  +    +  Q  +  + +L   A   + H      D    ++    G   F 
Sbjct: 480 EQIIAQKALSARAANAVQTFLALVQQLARAANDINIHGDTPSLDEIARLVIEDTGLLDFH 539

Query: 518 ---ISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI-KRAHSANHNEV 572
                  G    + L E +N     +       +  L   L+       +       + V
Sbjct: 540 QSEKGEKGQARGENLQELINACRAFDAEDAEEGVTPLQQFLDTAALDAGETQADEFEDAV 599

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H+AKGLE P+VFL      +F HK                               
Sbjct: 600 QLMTLHSAKGLEFPLVFLAGVEEGLFPHKMS----------------------------- 630

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                       EE  RL YVG+TRA ++LII               +    V +   + 
Sbjct: 631 -----ADDPDRLEEERRLAYVGITRAMEKLIITYAETRRMYGSETFNSVSRFVKEIPADC 685

Query: 693 ERVKKI 698
               ++
Sbjct: 686 IEEVRL 691


>gi|90416555|ref|ZP_01224486.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2207]
 gi|90331754|gb|EAS46982.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2207]
          Length = 676

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 113/632 (17%), Positives = 214/632 (33%), Gaps = 132/632 (20%)

Query: 87  QEINKKSPDLKEKLKKSQD-----EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           +E+  ++ +L EKL  +           + +         S          L   Y+ A 
Sbjct: 120 KELLARNTELDEKLIDTAQNTISNWKNGLLEPHQVASASASNSE--QATAMLYERYQRAL 177

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    +DF+DLI+    L + +     +  K  + I ++L+DE QDT+L Q+E++R+L  
Sbjct: 178 KAYNAVDFDDLIMTPVLLFRNKPE---VLDKWKRRIRYLLVDEYQDTNLAQYELVRTLV- 233

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +  + L  VGD+ QSIY++ GA P+ +++ +              +II+L 
Sbjct: 234 ---------NDKQALTVVGDDDQSIYAWRGARPENLMQLQTDFPT--------LNIIKLE 276

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + + +   +    +  S              G       + S ++  
Sbjct: 277 QNYRSTGRILKAANTLIANNPHLISKALWSEL------------GPGDPLRFISSDNEDD 324

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                                     R+   I +M           KR  +  D  VL R
Sbjct: 325 -----------------------ECERVVNEIIDM---------RLKRRCKYSDFAVLYR 352

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                 +I    +       I               IKD+MA  R I++ +DD + + ++
Sbjct: 353 GNYQAKIIEIKLQS----QSIPYEITGGQSFYAKTEIKDIMAYLRLIINPDDDNAMLRII 408

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494
            +P        + K+       T ++Y+ I +           + + +    ++  +   
Sbjct: 409 NTPRRQIGPTTLEKLGEYSNKRTLSLYDAIDEVGLTATMPANSLERLKRFKHWVQNINRN 468

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRN---------E 540
                P +    +L   +          ++       D +   L    +          E
Sbjct: 469 VYNGKPIEAINEMLDDIEYLDWLKQNASSDHVAHKRWDNVQFLLKQLAQVLKNDETATDE 528

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +   S ++  IS+L       +    +  ++V++MT+H AKGLE   VF+V     +  H
Sbjct: 529 EKGDSKIENAISKLILRDLLDREKEESADDKVQLMTLHAAKGLEFLHVFMVGMEEDILPH 588

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K+  +                                       EE  RL YVG+TRA  
Sbjct: 589 KNSVEGG-----------------------------------AIEEERRLAYVGITRAQR 613

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
            L +      +    ++  T    V +   +D
Sbjct: 614 TLTMTSARQRTQFGDTSPTTPSRFVDELPEDD 645


>gi|94984975|ref|YP_604339.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300]
 gi|94555256|gb|ABF45170.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300]
          Length = 741

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 113/735 (15%), Positives = 214/735 (29%), Gaps = 136/735 (18%)

Query: 6   GLSLNESYE------LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQAS 57
           G+   E            +      +        ++S     G   +    +   L++  
Sbjct: 54  GVDPGEILAVTFTNKAAAEMRERARHLVEGADRLWMSTFHSAGVRILRAYGEHIGLKRGF 113

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                +++  +L             +I           L+  L +++     +       
Sbjct: 114 VIYDDDDQLDILKEIM--------GSIPGIGAETHPRVLRGILDRAKSNL--LTPADLAR 163

Query: 118 KMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                       +A      YE  KK    +DF DLI  T  L ++      +  ++   
Sbjct: 164 HPEPFISGLPREVAAEAYRRYEARKKGQNAIDFGDLITETVRLFQE---VPAVLERVQDR 220

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
              I +DE QDT+  Q+E+ R L           S  R L  VGD  QSIY F GA+ + 
Sbjct: 221 ARFIHVDEYQDTNKAQYELTRLLA----------SRDRNLLVVGDPDQSIYRFRGADIQN 270

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L  ++              +  L  ++RS+A +LT+ +K+          +        
Sbjct: 271 ILDFQKDY--------LDAKVYMLEQNYRSSARVLTIANKLIENNAERLEKTLRPVKEDG 322

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
           H                               +    D   +          +A  ++ +
Sbjct: 323 H----------------------------PVLFHRATDQRAEGD-------FVAEWLTRL 347

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                         ++  D+ VL R    + +I    R      +I           D  
Sbjct: 348 HAEG----------MRFSDMAVLYRTNAQSRVIEESLR----RVQIPAKIVGGVGFYDRR 393

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------VYEYI 470
            IKD++A  R  ++ +DD++   ++  P     +  + ++        T       +   
Sbjct: 394 EIKDVLAYARLAINPDDDVALRRIIGRPKRGIGDTALERLMEWARVNGTSILTACAHAQE 453

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDV 528
                 G  K       +H +   A    P  F   ++               G   ++ 
Sbjct: 454 LNILERGAQKAVEFAGLMHAMSEAADNDEPGPFLRYVIETSGYLDLLRQEGQEGQVRLEN 513

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGL 583
           L+E ++      + +  ++ + + +                     + V +MT+H AKGL
Sbjct: 514 LEELVSAAEEWSRENEGTIGDFLDDAALLSSVDDMRTKQENKDVPEDAVTLMTLHNAKGL 573

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVF+V T   +   K+                                         
Sbjct: 574 EFPVVFIVGTEEGLLPSKNALLEPGG---------------------------------- 599

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            EE  RL YVG+TRA ++L +    N     K+        + +     + V        
Sbjct: 600 IEEERRLFYVGITRAMERLFLTAAQNRMQYGKTLATEDSRFLEEIKGGFDTVDAYGQVID 659

Query: 704 INKDEWIAYEWSTHH 718
                W  Y  +   
Sbjct: 660 DRPKSWKEYRPTESA 674


>gi|254480724|ref|ZP_05093971.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
            HTCC2148]
 gi|214039307|gb|EEB79967.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
            HTCC2148]
          Length = 1115

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 143/932 (15%), Positives = 283/932 (30%), Gaps = 132/932 (14%)

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
            + +    E +  +   FLTQ  + +K++    +    P   +  K  +  F+ +  R   
Sbjct: 262  AASADNMELWRFMGQLFLTQGGSFRKSV---NVRNGFPTGDDDAKARKAHFVDLVARMGQ 318

Query: 117  Y--------------------KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                                   ++  L    +   L A      ++  ++D   + ++ 
Sbjct: 319  VKGLAGELGGLAWLPRMDNHNDAWQMVLHLSHVLPLLAACLLLVFERRSLVDHSQVALSA 378

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRT 215
             D L + D    +  ++D  I HILIDE QDT++ Q+ ++  LT  +      +  +PRT
Sbjct: 379  LDALGEDDEPTELALRLDYSIEHILIDEFQDTAINQYNLVSKLTRGWGQHNALNPAAPRT 438

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            LF VGD  QSIY F  A     L+ ++         G     + L  +FRS   I+  V+
Sbjct: 439  LFIVGDGMQSIYGFRNANVGLFLKARQE-----GFNGVTLQALSLRCNFRSEQGIVDWVN 493

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
              F     A+                            V         P         + 
Sbjct: 494  DSFRDAFPAEDNVYRGR---------------------VSFTDAIAVKPAGAELAVSLNG 532

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
               E +    A+ +   ++  +                  I +L R R     I  L R 
Sbjct: 533  FWGEQAKEQEAQWLVEQVALGLAD-----------PNLGSIAILGRSRPQLAPILELLR- 580

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  I     +   L    AI DLM L R +++  D +++  +L++P    +  D+  
Sbjct: 581  ---QRDIPFASQEMDALAGSPAIVDLMTLCRALVNPGDRVAWYAVLRAPWCALNLADMKC 637

Query: 456  ICTQRHETETV--------YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            +     +             E     +  G  +  HV + +              +   +
Sbjct: 638  LADSAQDPRWQNVYGALCNRELPAGLSAEGKQRLLHVGQCLLWAQQRRDRLGLRAWIEQL 697

Query: 508  LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                 G   F  +      +     L             L   I  LEQ    +  +  A
Sbjct: 698  WLHLGGPACFTQQRFLADAERFLSLLQLA----DAEGKGLN--IDWLEQRISRLYASGDA 751

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
                +++MT+H +KGLE   V +               +    +        +      S
Sbjct: 752  PDARLQVMTLHKSKGLEFDWVLIPALARATRGDSRDILLWDEHNSKTGELGFMLAADDHS 811

Query: 628  R---NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                  + + L K  K+ ++ E  RLLYVG TRA  +L +        +           
Sbjct: 812  DDKTPGLYNFLKKQRKEKSRLETTRLLYVGATRAVKKLTLSACLGGGEDAGPQD------ 865

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                                  +     + +   P     ER+  +   M   +   K+ 
Sbjct: 866  --------------------EPEFKPPGDGALLAPIWATFERQAVVHVPMTSVQPQSKIS 905

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV------IFTLPE 798
              +      P  L     D+    N+     +      G +IH++L+       +     
Sbjct: 906  RGLLRLSQSPATLPLMPKDSPQGANIPDPALNWLDRYVGTVIHEVLEQLSLLASLPDELP 965

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSC-DSYSEVSVS 852
             +         +  +     ++ +     ++  + + +         +S   + +   ++
Sbjct: 966  VRLAELARHSLS--SMGLAEEQLEAAFGRVSHAVASTLADESGGRWVLSAQHAQAHSELT 1023

Query: 853  GKINCPKKDIIISGRIDQISISQQN--IFIFEYKTHHHVPQEIEH-----IPYTHIAQLS 905
              I    +   I   ID+  + +     +I +YK+                   +  QLS
Sbjct: 1024 LTIQEAGQPRDI--VIDRTFVDRDTGIRWIIDYKSSTPEAGVSAASFLQVEAGRYKNQLS 1081

Query: 906  IYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
             Y   + +  P + + C L +     +  + +
Sbjct: 1082 CYRDAMSEIGP-EPVRCALYFTGMACLHHLSE 1112


>gi|297562750|ref|YP_003681724.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
            43111]
 gi|296847198|gb|ADH69218.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
            43111]
          Length = 1150

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 133/981 (13%), Positives = 258/981 (26%), Gaps = 161/981 (16%)

Query: 91   KKSPDLKEKLKKSQDEF--IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
            ++   +   L+ + D           N           L L       YE AK     +D
Sbjct: 209  EQVRGIGRWLRAAVDALPRKPAVPTRNLLNAQLRREQLLPLV----EGYEHAKHVREAMD 264

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F D +     + +       I          +L+DE QDTS  Q  ++R+L  +      
Sbjct: 265  FGDQVSLAARIAQNHPEVGLI---ERGRFRVVLLDEYQDTSHAQLVLLRALFGE------ 315

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                   + AVGD  QSIY + GA    +              G+  S+  L  SFR+  
Sbjct: 316  ----GHAVTAVGDPCQSIYGWRGAIAANLANFPNDFPA---APGRAASVRRLATSFRNGE 368

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
             IL V                     +    +R G+ G V+    +  + +++   +Q +
Sbjct: 369  RILEVA----KHISEPLRAESAEVPVLYPGPARRGR-GAVRTGLFIGQREEARWIAEQVA 423

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                       S+ +            +              +   D+ VL RKR   P 
Sbjct: 424  GYLRAAPGRAGSATTAP--------DGLPWPPGESGGAADGGVSPGDVAVLCRKRSQFPA 475

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            I      L     I V       L     ++D++A  R +           +L  P +  
Sbjct: 476  IREALEEL----DIPVEVVGLGGLMMVPEVRDIIATLRVVHDASAGNELARLLTGPRWRI 531

Query: 449  SEDDIFKICTQR---------------------------------HETETVYEYI----- 470
               D+  +  +                                   E+ ++ + +     
Sbjct: 532  GPRDLAALGARAAELARQTRRDLTGPEPDQSAEDDILRRTVLDLTAESGSLVDAVDDPGP 591

Query: 471  -QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF---TLILGAKKGRQQFISRFGNEVI 526
             ++++     +   + + +  L  +       D       +LG          R      
Sbjct: 592  AERYSATAYERLGRLAEELRSLRKLVGQ-PLPDLVTETERMLGLDIEVGARSGRDPLSAR 650

Query: 527  DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI----KRAHSANHNEVRIMTVHTAK 581
              LD F++  +R    +   +L   +S L                   + V++MTVH +K
Sbjct: 651  ADLDAFVDHAVRFAGSSEDPTLGSFLSYLRAASERESGLAPGERVGGSDTVKLMTVHASK 710

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI---------V 632
            GL+ PVV +       ++      +           +  +  +   +N           +
Sbjct: 711  GLQWPVVVVPGVSGGKYAPLFPTSLSEGDMWIKGEHLLPYRLRGDRQNLPELLAVDKKGI 770

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-----DMVYD 687
                +  ++    E  RL YV +TRAS  L+   H   ++       + +          
Sbjct: 771  EAFKEAERERHLLEERRLAYVAVTRASFALLCTGHWWGTDAASERGPSPFLEEIRLACEG 830

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                    +     +    +E           E+      E   +    +    ++    
Sbjct: 831  GAGEVAHWEPRPDPDDNPYEEEDDGTAVWPPQEDDGSGPPEEGAEPDRPRDRRAQIAEGA 890

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDN-QTFNRGL---IIHKLLQ------------ 791
                     L     D   +      L      + R     + H+  +            
Sbjct: 891  AMVERARARLLAGEADPAEEAAPPPGLRRRIGGWERDTELLLAHRRAEGPGSGDGTVQVE 950

Query: 792  -----------VIFTLPEH-----------------KRKNFITSYCTKNAKLWPA--KEY 821
                        +   P                   +R     ++  +      A   E 
Sbjct: 951  LPAHLSVSSMVWLARDPSALARQIRRPLPRPPAPHTRRGTAFHAWLEQRFGQRAALLDEL 1010

Query: 822  KNLLLSITRLLENPMMTTAMSC------DSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
                       ++  +    S        S   V V         D ++ GR+D +    
Sbjct: 1011 PGAADETAG--QDEDLADLQSRFEESEWGSRVPVEVEVPFETVIGDRLVRGRMDAVFHDP 1068

Query: 876  --QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPK 931
                  + ++KT        E        QL+ Y     D      + +     YV    
Sbjct: 1069 ASGRYDVVDWKTGSPPGNGPERRAVG--VQLAAYRLAWADLAGVSLEEVSAAFHYVRAGL 1126

Query: 932  VFIIPQNKLNKAFAEISTKIP 952
                      +  A +   +P
Sbjct: 1127 TVRPADLLDAEGLAALIDAVP 1147


>gi|253988072|ref|YP_003039428.1| exonuclease V subunit beta [Photorhabdus asymbiotica subsp.
            asymbiotica ATCC 43949]
 gi|253779522|emb|CAQ82683.1| exodeoxyribonuclease V beta chain [Photorhabdus asymbiotica]
          Length = 1201

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 136/907 (14%), Positives = 286/907 (31%), Gaps = 149/907 (16%)

Query: 86   TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
            T++ N     L   +     + + +RD   +  + +           +     + K    
Sbjct: 302  TKKGNVPEHSLFVAIDNLYQQPLTLRDLIISKAIIE-----------VRQSIRQEKLMRG 350

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
             + F DL+   +D LK    S  +   I Q     LIDE QDT   Q+ +  ++      
Sbjct: 351  QMGFGDLLTRLDDALKGPG-SDLLAQTIRQRYPVALIDEFQDTDPQQYRIFHTIYG---- 405

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                +     L  +GD KQ+IY+F GA+    +R +       T          L  ++R
Sbjct: 406  ----NQPENGLLFIGDPKQAIYAFRGADIFTYIRARSQVSAHYT----------LETNWR 451

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            S   ++  V+K+F   EN     +     +             +        + ++    
Sbjct: 452  SAESMVRAVNKLFMRSENPFLFEQIPFVEVS----------AAEKNRGFAFSYGTKEQAA 501

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLV 380
               W    + +       +++R  A  I + +   +     +  + K R + A DI VLV
Sbjct: 502  LNFWLQPGEGVSTGDYEQMMSRFCAAQIRDWLQAGSEGRALLHKDEKVRPVTAADITVLV 561

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R RK+  LI      L      SV  ++R  + D    KD++ L + +LS E +      
Sbjct: 562  RSRKEAILIRDALNLLSIP---SVFLSNRESVFDTAEAKDILWLLQAVLSPEKERILRSA 618

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            L S LF  +   I K+       + + E    +          + +    L  +    + 
Sbjct: 619  LASGLFGLTARQIDKLNHDEKAWDQLVEEFDGYF--------RLWQRRGVLPMLRAVMTN 670

Query: 501  HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQY 557
            H     +L +  G ++ +          + E L      L +E      L + IS  +  
Sbjct: 671  HHIAENLLASYDGERRLMDVM------HIGELLQEISLQLDSEHAVTRWLAQQISHPDPQ 724

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                +    ++ + V+I T+H +KGLE  +V+L    +     + I    +         
Sbjct: 725  SENQQMRLESDRHLVQICTIHKSKGLEYSLVWLPFACNFRMQKQAIYHDRV--------- 775

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL------IICKHSNTS 671
                   +        + IK  ++    E  RLLYV +TR+          +I  +    
Sbjct: 776  ----SFDACLDIFPGEETIKLAEQERLAEDLRLLYVALTRSVYHCSVGVAPLIKGNKKKV 831

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD-------EWIAYEWSTHHPENTPL 724
             +   +Q     ++ +    D       L              +   + W +    +  L
Sbjct: 832  GDTDLHQCALGYLLQNGAKGDADFLATCLKELSGDGIAVSSINDMGDHPWESQSQHDLGL 891

Query: 725  EREETIKQLMDEQKIP--------------------KKLFSPIKNDINEPYILNPSTIDT 764
              ++  +++ D+ +I                     ++    I   I     ++ +    
Sbjct: 892  SAKQFKRRIQDDWRITSYSGLQNAVVHRGTVFPFAGEESIDVIVQSIAPKLDVDANGEKQ 951

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK-LWPAKEYKN 823
              +    +  +  +  + G  +H +L+ +        +  +    +      W     + 
Sbjct: 952  IAEQYEMTPHTFPRGASAGTFLHSILEELNFSQLPDEEWLVEQLKSAGFDEHWSEILRQW 1011

Query: 824  LLLSITRLLENP--MMTTAMSCDSYSEVSVSGKINCPKKDI------------------- 862
            ++   T  L++    ++         E+     +    +                     
Sbjct: 1012 MVDIFTTPLDDEGMQLSEIPLHHQQDEMQFYLPVEQLLRSQELDAVMRRYDPISARCPQL 1071

Query: 863  -------IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSI 906
                   ++ G ID +   Q   ++ +YK++        +             +  Q  +
Sbjct: 1072 EFQQVKGMLKGFIDLVFCWQNRFYVLDYKSNWLGNDSQAYTREAMETAMIEHRYDLQYQL 1131

Query: 907  YEKILKD 913
            Y   L  
Sbjct: 1132 YTLALHR 1138


>gi|145637780|ref|ZP_01793430.1| ATP-dependent DNA helicase [Haemophilus influenzae PittHH]
 gi|145269025|gb|EDK08978.1| ATP-dependent DNA helicase [Haemophilus influenzae PittHH]
          Length = 671

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 117/644 (18%), Positives = 224/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--GAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRAKWQTKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 D----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGKGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  ++++ I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L A    +       +          +    ++        E N   
Sbjct: 467 IQRSEPERALRSMLSAIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|84687310|ref|ZP_01015190.1| Putative uvrD/DNA Helicase II [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84664743|gb|EAQ11227.1| Putative uvrD/DNA Helicase II [Rhodobacterales bacterium HTCC2654]
          Length = 794

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/648 (15%), Positives = 200/648 (30%), Gaps = 92/648 (14%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+   K    +DF DL+++   +L++ +    +  +  +   +IL+DE QDT++ 
Sbjct: 178 ELYAAYQVRLKTLNAVDFGDLLLHMVTILREHED---VLAQYQRWFRYILVDEYQDTNVA 234

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +            R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 235 QYLWLRLLAQ----------GHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 278

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL   + V +      G    +      +   IG     +  
Sbjct: 279 --GAKVIRLEQNYRSTEHILEAANAVIAGNAERLGKELFTEEGQGDKVRLIGHWDGEEEA 336

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---------------ARRIAYTISNM 356
             +  + ++  +       +  ++     +                     ++    +  
Sbjct: 337 RWIGDEVEAMQSGSSRYSRTRHNARSTSEAQETERLSKRGSTQKVREDDIHQVNLDRAQT 396

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +      +          +I +LVR                    +           + +
Sbjct: 397 LTDAGRDNLPLPNNYSLDEIAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERM 452

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------Y 469
            I+D MA  R  +S +DDL+F  ++ +P     +  +  I    R     + +       
Sbjct: 453 EIRDAMAYFRLAVSPDDDLAFERIVNTPRRGLGDKAVQTIQRVARAGNVPLVDGAAKCVN 512

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFISRFGNE--- 524
             +    G      +++ I+      +    +  +   +IL      + + +    E   
Sbjct: 513 QGEIKGKGGKGLSDLVQNIYRWHSQVRDEADTHVELAEMILEESGYTEMWQNDKTPEAPG 572

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
            ++ L E +      +         L   LE     +  +      +V IMT+H AKGLE
Sbjct: 573 RLENLKELVKALEEFDN--------LQGFLEHVALIMDNSSGEEEEKVTIMTLHAAKGLE 624

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            P VFL      +F  +       +                                   
Sbjct: 625 YPAVFLPGWEDGLFPSQRSMDETGL--------------------------------KGL 652

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           EE  RL YVG+TRA +   I   +N     +   +     + +   +   V         
Sbjct: 653 EEERRLAYVGITRAEEMCTISFAANRRVFGQWQSQMPSRFIDELPEDHVEVLTPPGLYGG 712

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                 ++   +   E                Q    +      N+  
Sbjct: 713 GYGATASFGSGSSLEEKAARADAYNSPGWKRMQARGAERHMHSPNESR 760


>gi|289766345|ref|ZP_06525723.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11]
 gi|289717900|gb|EFD81912.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11]
          Length = 735

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/546 (19%), Positives = 182/546 (33%), Gaps = 117/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y     ++  +DF D+++NT  LL+K +    I  K+  +  +I+IDE QDT+ +
Sbjct: 167 EVYDKYNRVLLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +          
Sbjct: 223 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFETNYNN----- 267

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST  IL   +++    ++++                        LW
Sbjct: 268 ---AKIIKLEENYRSTTTILDAANELIKNNKSSKDKK---------------------LW 303

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              +  ++  + S       RI   I                 I
Sbjct: 304 -------TQNGKGDLIKVLACDNARDEVS-------RIIEIIKRNHQNG----------I 339

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D+ +L R    + L           Y I               IKD++A    I++ 
Sbjct: 340 AYRDMTILYRTNAQSRLFEEGF----LRYNIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 395

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHV 484
           +D+L+   ++  P     E  I KI    R     + E +            G  K   +
Sbjct: 396 QDELNLQRIINVPKRKVGEKGIEKIITYARENNLNLLEALSHIKEISGLTVVGKEKLLEM 455

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQN 542
              I EL  ++   +       ++   K               I+ +DEF N  L  E  
Sbjct: 456 YDIIKELKDLSYTETASYIVQTLIDKIKYIDYIKENYSDAEARIENIDEFKNSILELE-- 513

Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      L   LE     +         + V++MT+H +KGLE P+VFLV   +++F   
Sbjct: 514 NVVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGP 573

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                 ++   EE  RL YV +TRA  +
Sbjct: 574 ----------------------------------RAMFEEKEMEEERRLCYVALTRAEKK 599

Query: 662 LIICKH 667
           L +   
Sbjct: 600 LYLSHA 605


>gi|221214933|ref|ZP_03587901.1| DNA helicase II [Burkholderia multivorans CGD1]
 gi|221165160|gb|EED97638.1| DNA helicase II [Burkholderia multivorans CGD1]
          Length = 786

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 121/810 (14%), Positives = 229/810 (28%), Gaps = 168/810 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +  W +     S                ++ +   +            
Sbjct: 28  GAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTNKAAREMMARLSAMMPIDTRGMWIGT 87

Query: 66  FSLLS----SFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIK---------I 110
           F  L              PQ    + T +       L + L    +++            
Sbjct: 88  FHGLCNRMLRAHYRDAGLPQTFQILDTADQLSAIKRLMKTLNVDDEKYPPKNVQYFINNA 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++        ++         L   Y++  ++  V+DF +L++   +LL      A +R
Sbjct: 148 KEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F 
Sbjct: 205 AHYQARFRHILVDEFQDTNKLQYAWLKMLAG----------GQNAIFAVGDDDQSIYAFR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  
Sbjct: 255 GANVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLR 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +           G    V+++                          + S+ +  A  I 
Sbjct: 307 TD---------AGHGEPVRVY--------------------------EASTDAQEAGWIV 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I ++I T           +   +I VL R    +  I            I        
Sbjct: 332 EEIRSLINTG----------LSRSEIAVLYRSNAQSRAIEHTL----MTSGIPYRVYGGL 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   
Sbjct: 378 RFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYGCSMAAA 437

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDV 528
           I        +        I ++    Q  S  +    ++ A      +   R G + ++ 
Sbjct: 438 IPYVTGKAGTSLGAFANLIAKMRAETQQMSLPETVEYVVRASGLADFYQGEREGQDRLEN 497

Query: 529 LDEFLNFTLRNEQNSYSSLQE--------------------------------------- 549
           L E +N            L                                         
Sbjct: 498 LQELVNAATAFVSEEGYGLDTPARSIPLRAGAIAAPEIGAARDDASVDVLAPASLDDPAQ 557

Query: 550 -------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                  L   L             A  + V++MTVH AKGLE   VF+      +F H+
Sbjct: 558 NPDTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFSAVFITGLEEGLFPHE 617

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                    L+    EE  RL+YV +TRA ++
Sbjct: 618 NSV----------------------------------LESDGLEEERRLMYVAITRAKER 643

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +    +     ++          +   +  +    K+                     
Sbjct: 644 LYLSFAQSRMLHGQTRYNVRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFA 703

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            P    E          +P         D+
Sbjct: 704 RPGAGREQYVDAAVSAPLPAFADQQRAADV 733


>gi|299131903|ref|ZP_07025098.1| UvrD/REP helicase [Afipia sp. 1NLS2]
 gi|298592040|gb|EFI52240.1| UvrD/REP helicase [Afipia sp. 1NLS2]
          Length = 830

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/577 (17%), Positives = 176/577 (30%), Gaps = 138/577 (23%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y+E  K     DF DL++    + ++      +  +      +IL+DE QDT++ Q
Sbjct: 204 LYTAYQERLKILNAADFGDLLLENIRIFREHPD---VLRQYQHRFKYILVDEYQDTNVAQ 260

Query: 193 WEVIRSLT----------------------------EDFFVGKNTHSSPRTLFAVGDEKQ 224
           +  +R L                                       + P+ +  VGD+ Q
Sbjct: 261 YLWLRLLAQAPSQSPVIPGRTEGASPESAGQQLLDSGSAPAAHPGMTKPKNICCVGDDDQ 320

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY + GAE   +LR +               ++ L  ++RST  IL     + +  E  
Sbjct: 321 SIYGWRGAEVDNILRFEHDFP--------GAKVVRLERNYRSTGHILAAASHLIAHNEGR 372

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
            G +                                  + ++ + T  +DS  +      
Sbjct: 373 LGKTL----------------------------RTEDVDGEKVTVTGSWDSEEE------ 398

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR I   I     T            +  +I +LVR              L     +  
Sbjct: 399 -ARSIGEEIEQFQRTGQ----------KLNEIAILVRASFQMREFEDRFVTL----GLPY 443

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463
                    +   I+D +A  R I S  DDL+F  ++ +P     +  +  +    R   
Sbjct: 444 RVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNTPKRGLGDATVQLLHDIARKRR 503

Query: 464 ETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
             + E  +      +         + +I             S  +    +L      + +
Sbjct: 504 IPLTEAARQVIETDELKPKARGSLRDLIASFDRWTTQRDIISHTELAETVLDESGYTEMW 563

Query: 518 ISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
                 +     + L E +      E         L   LE     + R   A+ + V +
Sbjct: 564 QKDRSADAAGRLENLKELVRSMEEFEN--------LHGFLEHISLVMDREGGADEDAVSV 615

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H+AKGLE   VFL      +F H+                                 
Sbjct: 616 MTLHSAKGLEFDNVFLPGWEEGLFPHQR-------------------------------- 643

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            +    ++  EE  RL +VG+TRA  +  I   +N  
Sbjct: 644 ALDEQGRAGLEEERRLAHVGITRARRRAKIYFATNRR 680


>gi|294506436|ref|YP_003570494.1| DNA helicase II [Salinibacter ruber M8]
 gi|294342764|emb|CBH23542.1| DNA helicase II [Salinibacter ruber M8]
          Length = 786

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/631 (15%), Positives = 202/631 (32%), Gaps = 118/631 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   YE A K+   LDF+DL++   +L ++ +    +  K  +   ++ IDE QD
Sbjct: 188 EIVAEVYPAYERALKQANALDFDDLLLKPIELFEQHED---VLEKYQRRWQYVHIDEYQD 244

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ + R L+             + L  VGD+ QSIY+F GA+   +L         
Sbjct: 245 TNQAQYVLARKLSG----------RHKNLCVVGDDAQSIYAFRGADITNILNFDTDYP-- 292

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I L  ++RST +I+ + D +    ++    S                   
Sbjct: 293 ------DATTIRLERNYRSTENIIRLADSIIEENDDQIEKS------------------- 327

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           +  +  + +  ++L ++      A++I   + ++   D +     
Sbjct: 328 --LW----------TDNAEGEYVALMEALSEKDE----AQKIERRVRDLHLRDGM----- 366

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  D  VL R    +  I    R       +           +   IKD++A  + 
Sbjct: 367 ----EYGDFAVLYRTNAQSRAIEEALR----KENVPYRVIGGTSFYERKEIKDVLAYLKL 418

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISK 480
           +++  D  S   ++  P     +    ++    +    ++++ +++              
Sbjct: 419 LVNPNDTASLQRVINYPTRGIGDKTQERLQRYAQQHNLSLWQAVERVEEIETLGTRAERA 478

Query: 481 FQHVIKYIHELIHIAQFCSP--HDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                + I      A   S    +    ++       +       E     + + E ++ 
Sbjct: 479 VGKFRRLIARYASKAGTGSVPADELARDLIQDAGLLSELRKEHTRENLQRWENVQELISA 538

Query: 536 TLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E    +++   + E+               ++V +MT+H AKG E PVVF+    
Sbjct: 539 LAEYVESTEDATISTFLQEVALMTDQD--EAEEGDDKVTLMTLHAAKGTEFPVVFVAGLE 596

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F  +                                      +K+  EE  RL YVG
Sbjct: 597 EGLFPLEQ----------------------------------ATQEKAELEEERRLFYVG 622

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +TRA ++L +    +     +    T    + +   +  R +                  
Sbjct: 623 VTRAEERLYLSWARSRYRYGEQTSNTRSRFLEEVDSDVVRTEAGGELEQQTDRFSAEEGP 682

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           S  + E  P    + +            L  
Sbjct: 683 SADYDEMDPHYYRQDLSGDGGASGSSDGLRR 713


>gi|289450713|ref|YP_003474825.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185260|gb|ADC91685.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 849

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/604 (17%), Positives = 195/604 (32%), Gaps = 132/604 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y    +    +DF+D++     L  +      +RY   Q  N+IL+DE QDT+
Sbjct: 206 VADVYRLYAAKLQSADAMDFDDILYYAVRLFTEH---KDVRYHYCQLFNYILVDEYQDTN 262

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +I+ LT          S    L  VGD+ QSIYSF GA+   +L  ++       
Sbjct: 263 GAQYRLIKLLT----------SGKNNLCVVGDDDQSIYSFRGADITNILNFEKDFPA--- 309

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + + +     +  +               + G  +
Sbjct: 310 -----CEVIKLEQNYRSTESILGAANAIIAHNTERKDKTL-----------WTAKAGGNK 353

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +    ++  D++                        A+ +A  I +M   D         
Sbjct: 354 IKLLNLANQDAE------------------------AKYVAAQIIDMRRADPT------- 382

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D  +L R    +  + F  R    D  I           D   IKD++A  R + 
Sbjct: 383 -LNYSDFAILYRLNALSRSLEFALR----DQGIEYRIYGSVRFFDRKEIKDVLAYLRLLA 437

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------KFQH 483
           +  D +SF  ++  P     +     +             + + A    S      K Q 
Sbjct: 438 NPYDGISFSRIINVPRRGIGDITQAAVLNLAETASITPLEVCRRAGDFPSLERAAYKLQT 497

Query: 484 VIKYIHELIHIAQFCSPHD-FFTLILGAKKGRQQFIS------RFGNEVIDVLDEFLNFT 536
               + EL    Q       F   ++     + + I+          + +  L E ++  
Sbjct: 498 FAALMDELAASLQNAKTFAMFIDGVINDTGLQAEIINQAKKTGEDPADRVANLQELVSDV 557

Query: 537 LRNEQNSYS-----------------SLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           ++ E N                      + L + L++         + + + V++MT+H+
Sbjct: 558 VQFEHNPLPPDVVMLEAENDEVTTWSRSELLDAYLDRVALISGNDQTEDADAVKLMTIHS 617

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFL+     +F                                         
Sbjct: 618 AKGLEFANVFLIGMEEGIFPG----------------------------------FRSLE 643

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            ++  EE  RL YV +TRA  +L I          +++       V +        ++I 
Sbjct: 644 TENGVEEERRLAYVAVTRAMRRLFITMVRERMLYGRTSHEIPSRFVAEIPTEFLETQRIA 703

Query: 700 LTNS 703
             N 
Sbjct: 704 DANE 707


>gi|238754830|ref|ZP_04616181.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia ruckeri ATCC 29473]
 gi|238706990|gb|EEP99356.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA
            endonuclease [Yersinia ruckeri ATCC 29473]
          Length = 1193

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 132/977 (13%), Positives = 291/977 (29%), Gaps = 141/977 (14%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            E ++ I   +  L  F   +   + +L   +G       ++ L               + 
Sbjct: 220  ERHQQIIAKIDALKDFWCENAPNFAALISNSGVDKRSYSSKHLPNWLAKVGEWAGQETVD 279

Query: 71   SFFLTQKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 +    +++++   T++       +   +    ++ + +RD               
Sbjct: 280  YTLPKELEKFRQSVLFEKTKKGVAPEHPVFMAVDVLFEQSLTLRDLL-----------LA 328

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               + + A  ++ K+    L F+DL+   +  L+       +   I       +IDE QD
Sbjct: 329  RAIREIRASVQQEKQHRAELGFDDLLSRLDIALQ-PPEGDALSEAIRHRYPVAMIDEFQD 387

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T   Q+ +  ++                L  +GD KQ+IY+F GA+    ++ +      
Sbjct: 388  TDPQQYRIFNAVYGG--------QKDCGLLLIGDPKQAIYAFRGADIFTYIKARSEVSAH 439

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
             T          L  ++RS+  ++  V+++FS  +      +     +            
Sbjct: 440  YT----------LETNWRSSLPMVRSVNRLFSRVKVPFLFEQIPFIEVN----------A 479

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----I 362
             +    +  Q D +  P    W    + +       +++R+ A  I + +         +
Sbjct: 480  AEKNRVLDFQIDGETQPALHFWLQQGEGVGVTEYQQLMSRQCAMQIRDWLTAGQQGKAIL 539

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
             +      +QA DI +LVR R +  LI      L      SV  ++R  + D    KDL+
Sbjct: 540  HTAKGPSSVQASDITILVRSRAEAALIREALSSLSIP---SVYLSNRDSVFDTPEAKDLL 596

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L + +L+ E + +    + + L       +  +       + +     ++        +
Sbjct: 597  WLLQAVLAPEQERALRSAMATSLLGLDAQMLDALNHDEKAWDALVNEFDRYRQHWQK--R 654

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             V+  + EL+              +L ++ G ++         +   +      L +E  
Sbjct: 655  GVLPMLRELLACRG------LAENLLASEGGERRLTDVLHLGELLQEE---ESQLESEHG 705

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                L + I++        +    ++ + V+++T+H +KGLE P+V+L   G+       
Sbjct: 706  LVRWLAQQIAQPNHQSENQRLRLESDRHLVQVITIHKSKGLEYPLVWLPFVGNFRQQQDV 765

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
            I                          N   +  +  ++    E  RLLYV +TR+    
Sbjct: 766  IYHDRQSFEAL-------------LDLNASDESKQLAEEERLAEDLRLLYVALTRSIYHC 812

Query: 663  ------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
                  +I        +   +      +V  S   D      KL    +KD  ++     
Sbjct: 813  SLGIAPLIKGGRKKQGDSDMHLSALGYLVQCSQAGDAAYLAEKLAELSDKDIAVSLVDRL 872

Query: 717  HHPENTPLER--EETIKQLMDEQKIPKKLFSPIKNDINEPYILN---------------- 758
                  P      E   +    Q       +            +                
Sbjct: 873  DDKVWQPHNELIPELSARQFTRQIFDYWRVTSYSGLQQHGSSRSINIPGDELLPLELLPR 932

Query: 759  ----PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                 +         + +  +  +    G  +H LL+ I                     
Sbjct: 933  LDTDAAGEQGLSDERILTPHTFPRGAAPGTFLHDLLEQIDFSQPLDELWLAEQLLQYGLD 992

Query: 815  LWPAKEYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSVSGKINCPKK----------- 860
                   +  L  I  + L      + +    D  +E+     I+   +           
Sbjct: 993  EEWCPVLRQWLTDIASVPLNQSGVTLGSLPPKDKQAELQFYLPIDGLLQAEELDLLVKKY 1052

Query: 861  ---------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY------- 898
                             ++ G ID +   Q   ++ +YK++        +          
Sbjct: 1053 DPLSTRCPKLDFKQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSHAYTREAMAQAMA 1112

Query: 899  --THIAQLSIYEKILKD 913
               +  Q  +Y   L  
Sbjct: 1113 EHRYDLQYQLYTLALHR 1129


>gi|149198486|ref|ZP_01875531.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa
            HTCC2155]
 gi|149138492|gb|EDM26900.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa
            HTCC2155]
          Length = 1198

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 130/880 (14%), Positives = 263/880 (29%), Gaps = 138/880 (15%)

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               K     YE  K+K  V+ F+DLII  ++ L +   +  +   I       L+DE QD
Sbjct: 302  RFLKSFREKYEAKKEKLNVMTFDDLIIKLHEALVRDQANGPLHSLIRDNFKVALVDEFQD 361

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T  IQ+++ +SL      G  +H++    + +GD KQSIY F GA+    L+ K    ++
Sbjct: 362  TDPIQYQIFKSLF-----GDKSHATEHAFYMIGDPKQSIYRFRGADIFAYLQAKNDADEQ 416

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
             T          L  ++RS A ++  V+  FS     +  +          +        
Sbjct: 417  FT----------LQDNYRSEAAMVDAVNHFFSQRGADEAFAFAPAHESEGITFEPVGAKA 466

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFD--SLPQESSASILARRIAYTISNMIGTDTI--- 362
                ++   +   Q    Q  W    +   L +    +++   +   I +++        
Sbjct: 467  ----DKNTLKITGQPESLQLRWYRADEDKDLSKTDLQNLMPSLVTEEIISLLNKSQQGSA 522

Query: 363  -FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             F + +K+ ++  DI +LV K      +            I  V      +        L
Sbjct: 523  YFESEEKQALKPGDICILVNKNNQATAMKQSLNE----NGIPAVVAKSGNVFKSAEANAL 578

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
                  ++  +D      +L S LF  + ++I ++     + E      +        + 
Sbjct: 579  ERFLNAVIDPKDSSLIP-LLLSELFTLTAEEIKEL----GDQERFELLTEFVDYHREWEK 633

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +  ++ + + I        H  +T  L   +G +             L +        EQ
Sbjct: 634  RGFLRTLQKFIDR------HQLYTRTLEQDQGERSLS---------NLYQLREILHEEEQ 678

Query: 542  NSYSSLQELISELEQ------YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            +       L+  L++            +    + N V+IMT+H +KGLE PVVF     S
Sbjct: 679  SKGLGPSGLLRFLQEKTQADKVDDQYLQRLETDDNAVKIMTIHKSKGLEFPVVFCPYMWS 738

Query: 596  QVFSHKHIKKMHIMPSLND---DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            + F              ND        +             +     ++    E  RLLY
Sbjct: 739  ESFEESSYGSFGESNKKNDFEYHDDSRLASLSIDPDEEFRQEKRYLWRREILSEKLRLLY 798

Query: 653  VGMTRASDQLII--------------------CKHSNTSNEKKSNQRTWYDMVYDSFHND 692
            V +TR++ +  +                                   +    ++     +
Sbjct: 799  VALTRSAHRCYLYWGDVNVSNTPFEYLANPEVTGADIADGTSTKLDSSQRRSIWQDQVAN 858

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                K     +I++     Y          P E +      +D                 
Sbjct: 859  TSHTKFCELGNIDQMSPCFYRPKNDLELRKPKELKFEFPIWVDGSYSGLIRSHDKVQFTP 918

Query: 753  EPYILNPS-----TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
            +   L+         + + +   E   +  +    G  IH++ + I    E   +  I  
Sbjct: 919  DQAPLDDEGEKIPNAEPEEEIIPEGFFAFPRGAVPGTCIHEIFEHIDFQDERGWEEIIAD 978

Query: 808  YCTKNAKLWPA------------KEYKNLLLSITR---LLENPMMTTAMSCDSYSEVSVS 852
                                    + K++L  +     +  +  + +        E+   
Sbjct: 979  RLKHYQLHETELANQEEFFAKRIADCKDMLRKVLSTTLVHNDFALDSIPRHQRLDELEFH 1038

Query: 853  GK-------------------------------INCPKKDIIISGRIDQISISQQNIFIF 881
                                             +N   ++   +G ID         +I 
Sbjct: 1039 YPVKDIQLKKLQKLFLAHYSDGFPHDYSLDLEKLNYRMEEGYFNGSIDLSFQKDGKFYIV 1098

Query: 882  EYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILK 912
            ++K+++  P+  ++             +  Q  IY     
Sbjct: 1099 DWKSNYLGPRYEDYHGEALQRAVREHFYFLQYHIYTLAFH 1138


>gi|294339627|emb|CAZ87986.1| DNA helicase II [Thiomonas sp. 3As]
          Length = 781

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 104/688 (15%), Positives = 206/688 (29%), Gaps = 136/688 (19%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               +D+       ++          +   YE    ++ V DF +L++ + ++L+     
Sbjct: 144 INGAKDQGLRPGDVEARDPQSRQLAEIYLAYEAQCTRDGVADFAELLLRSYEILRDN--- 200

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           A IR    Q   HIL+DE QDT+ +Q++ ++ L           +    +FAVGD+ QSI
Sbjct: 201 AAIRSHYRQRFRHILVDEFQDTNRLQYQWLKQLAG------PEDAQGACVFAVGDDDQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+F GA    +   +R  + R         +I+L  ++RS   IL   + + +      G
Sbjct: 255 YAFRGAHAGNMDDYQREFRVR--------HLIKLERNYRSHGHILDSANTLIANNARRLG 306

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                            + ++        + +  D           A
Sbjct: 307 KNL---------------------------RTEAGAGEPVRVFEAPSDYAE--------A 331

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +   I  ++             +   +I VL R    + +I         +  +    
Sbjct: 332 QWLIEEIRQLLREG----------LVHSEIAVLYRANALSRVIEGAL----FNAGLPYRV 377

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  +   +K  +A  R + + +DD +F+ ++  P        + ++    R     
Sbjct: 378 YGGLRFFERAEVKHALAYLRLLDNPQDDTAFLRVVNFPARGIGARTLEQLQDAARLRATP 437

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNE 524
           + E +      G +  Q  +  + ++       S  +    +L A      +   R G E
Sbjct: 438 LSEAVDALGGRGAASLQAFLDLVAQMRFQTAAISLPELVRHVLEASGLNAHYREEREGQE 497

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQE-------------------------------LISE 553
            ++ L+E +N            LQ                                L + 
Sbjct: 498 RLENLEELVNAAAAFVTQEGFGLQATAQQRQALGAAPDSFAATDGIDPATGETLSPLTAF 557

Query: 554 LEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           L                + +++MTVH AKGLE   VF+      +F H++          
Sbjct: 558 LTHAALEAGDNQAQNGQDAIQMMTVHAAKGLEFDAVFITGLEEGLFPHENALSETDG--- 614

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS- 671
                                           EE  RL+YV +TRA  +L +        
Sbjct: 615 -------------------------------VEEERRLMYVAITRARKRLYLSLAQTRML 643

Query: 672 -NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             + + N R+ +     +        K+         +  +    T            + 
Sbjct: 644 HGQTRYNLRSRFFDELPAESLKWLSAKLPGFGGGFGADQHSSWSYTPKVSVPSFTPATSN 703

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILN 758
                             +    P+ L 
Sbjct: 704 AGSPSSTGFSPAGVRGASSSGARPHGLR 731


>gi|317178183|dbj|BAJ55972.1| DNA helicase II [Helicobacter pylori F16]
          Length = 681

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/572 (17%), Positives = 186/572 (32%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIK 486
                 +L  P     +     I +    E   + E ++      K  +         I 
Sbjct: 388 RFFIRRVLNKPSRGLGKITQEWIFSLLDDENLNLEEALKLGVFKGKLNHKNEYALNKFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F T  L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVEEFCTRFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVQERSYFGRKISCSPSVFLEEAKLLKQDNPP 619


>gi|254994829|ref|ZP_05277019.1| DNA helicase II (uvrD) [Anaplasma marginale str. Mississippi]
          Length = 660

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/612 (17%), Positives = 189/612 (30%), Gaps = 124/612 (20%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTL--A 125
           L   F       Q  +I   +N   P    E+ KK      + +++         T    
Sbjct: 122 LRRDFTVIGPDDQLQLIKAIVNDTQPGHPAEECKKMMHAIQRWKEKGLLPAGVTDTELQK 181

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              + + +   Y+E  K     DF DL++    +       A +     ++  ++++DE 
Sbjct: 182 CPNIVRDVYYEYQERLK-VNCADFGDLLLYNVSMFSAH---ADVLSHYQEQFKYVMVDEY 237

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +Q+  +R + +            + +  VGD+ QSIYS+ GAE   +LR      
Sbjct: 238 QDINTVQYLWLRLIVQ----------KRKNICCVGDDDQSIYSWRGAEVGNILRFADDFP 287

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +          I+ L  ++RST++IL     + +  ++  G                   
Sbjct: 288 E--------AKIVRLECNYRSTSNILCAASAIINNNKSRLGKK----------------- 322

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW    + H  Q     + W              + A+ I+  I            
Sbjct: 323 ----LW---TTNHAGQKVGLMKFWDG-----------RMEAQFISEYIK----------- 353

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +  +  +LVR    T +             I           D   IKDL++  
Sbjct: 354 -GSSEYRFDETAILVRAGFQTRVFEEYL----VRCGIPYKIIGSTKFYDRQEIKDLVSYL 408

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGI 478
           R + + ++D++F  ++  P        + K+    R    ++ E                
Sbjct: 409 RVVTNPKNDIAFERIVNKPKRQLGASTVAKMRAYARDNRLSLLESGESMMRFGLLPERTS 468

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFT 536
           +  Q+++             S       I                    I+ + E     
Sbjct: 469 NTLQNLLDKFKCWRETLDTTSLTTVMQAIAEGSGYMSMLKDEGDAGASKIENIRELFAAV 528

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              E        + +  +         +    +N V +MT+H AKGLE P+VFL      
Sbjct: 529 GNFENA-----TKFLEHISLVTEVD--SPEQANNHVYLMTLHAAKGLEFPLVFLPGWEEG 581

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           VF H+                                           EE  RL YVGMT
Sbjct: 582 VFPHEKSIHDSTGN--------------------------------ALEEERRLAYVGMT 609

Query: 657 RASDQLIICKHS 668
           RA +QL I   +
Sbjct: 610 RAREQLFISCVA 621


>gi|82701856|ref|YP_411422.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196]
 gi|82409921|gb|ABB74030.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosospira
            multiformis ATCC 25196]
          Length = 1196

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 150/1006 (14%), Positives = 291/1006 (28%), Gaps = 155/1006 (15%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER----F 66
                 ++    P+   ++  + +Y   ++  G    ++  + L         EE+    +
Sbjct: 243  RRVRALWASHPPVAQDELLALVRYAGSNLANGASLSIEY-ERLGALDILPGCEEQDVFCW 301

Query: 67   SLLSSFFLTQKFTPQK----------NIITQEINKKSPDLKEKLKKSQDEFIK------- 109
              +S   LT+    +K             T+   + +   KE+  +   +  +       
Sbjct: 302  CAISELLLTRGGDWRKQHTVREGFPPGSGTKAEKEIAKSWKERALRLISQLAENDEGSLR 361

Query: 110  -IRDRFNTYKMFKSTLASLTLAKYLNA----HYEEAK---KKNCVLDFEDLIINTNDLLK 161
                          T     +   +         + K   +++  +DF ++       L 
Sbjct: 362  QSLHDIRLLPPPAYTEGQWKILGSITRLLPYAVAQLKLVFQQHGKVDFTEVAQAALRALG 421

Query: 162  KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
              +    +   +D  I H+LIDE QDTS+ Q+E++  LT  +  G       R++F VGD
Sbjct: 422  DPEAPTDLALALDYRIRHLLIDEFQDTSISQYELVTKLTTGWEPGDG-----RSMFVVGD 476

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
              QSIY F  AE    LR +      A         + L  +FRS   I+  V+  F+  
Sbjct: 477  PMQSIYRFRQAEVGLFLRARA-----AGFGNVTLGPVSLSANFRSQRGIVDWVNATFASV 531

Query: 282  -ENAQGLSEDSTTTIRHRSSRIGQVGT-VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                + +S  S       + R       V +       H ++     E            
Sbjct: 532  MPQRENISTGSVRYSPSVAVRTALPDPAVSVHPFFNDDHGAEGAKVVEIVARA------- 584

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                                        +R        +LVR R     I    +     
Sbjct: 585  ----------------------------QRDENCSTTAILVRNRSHLAEILPRLK----K 612

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              +     +   L     ++DL+ L R ++   D L++  +L++P    +  D+  + + 
Sbjct: 613  AGLRFRAIEIEGLGRQPVVQDLLVLTRALMHPADRLAWFALLRAPWCGLTLADLHALVSA 672

Query: 460  RHE---------------------TETVYEYIQKF------ANCGISKFQHVIKYIHELI 492
              +                       TV+E++Q        +  G  +   V   +   +
Sbjct: 673  APDQSDEASAPGTVQEGEENAGPGRGTVWEWLQDENRIAFVSADGYERLLRVRNVLKACM 732

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELI 551
                  S          A  G        G E     LD   +     E  S  SL  L 
Sbjct: 733  ANRNRQSLRATVEAAWLALGGPACLEDEAGLEDASAYLDYLES---HEEAGSIRSLAALE 789

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
              L           +     ++IMT+H AKGLE   V +   G    S +    M +   
Sbjct: 790  EGLTGLSA---LPDAKADGTLQIMTIHKAKGLEFDCVIVPGLGRLSRSDEKKLFMWMEHL 846

Query: 612  LNDDPGIPIWIPQSKSR-------------NNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             ++ P         ++              + I S + K   +    E  RLLYV  TRA
Sbjct: 847  RDEWPETEEEESGGRNDLLLAPIQETGSGSDPIYSWIEKLDDEKECLEDGRLLYVAATRA 906

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
              +L +   +   +  +                     +     +  K  +   + ++  
Sbjct: 907  RKRLHLLGSTGVISGNEGGAELRPPPARTLLSKIWPAVESFYREAAAKAVFS--DPASCG 964

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                   R++ +      + +      P    +      +P          +E   +   
Sbjct: 965  DNKEQEARDKPVIDQSLRRLVSGWELPPAPRALQWEAGPSP----LPPWREVEYSWAGET 1020

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNF---------ITSYCTKNAKLWPAKEYKNLLLSIT 829
                G I+HK LQ I                            A      +    +  + 
Sbjct: 1021 ARLVGNIVHKWLQRIAEDGLADWNAARIIDLRDVFRRQLIACGAISTGKDDSDVAVKRVM 1080

Query: 830  RLLEN----PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYK 884
              L +    P     +      E     ++        +   ID+         ++ +YK
Sbjct: 1081 AALTHAVSEPRGRWLLGPQQ--EARSELRMTGHIGGQYMDFVIDRTFRDVAGQRWVVDYK 1138

Query: 885  THHHVPQE----IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            T  H   +    ++     +  QL  Y  +++     + +   L +
Sbjct: 1139 TSSHEGADMGEFLDREQERYRDQLDRYAALVQAV-EGQPVRRGLYF 1183


>gi|163786810|ref|ZP_02181258.1| hypothetical protein FBALC1_16532 [Flavobacteriales bacterium ALC-1]
 gi|159878670|gb|EDP72726.1| hypothetical protein FBALC1_16532 [Flavobacteriales bacterium ALC-1]
          Length = 1043

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 152/947 (16%), Positives = 323/947 (34%), Gaps = 132/947 (13%)

Query: 1    LKNRFG---LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57
            LK   G   + L ++ E   +    L        + +   S+      + +     ++  
Sbjct: 217  LKKELGKQIIHLEDTIEKTAETSLTLIEECGLQFDDFNRKSLPKHFENLKE-----KRFH 271

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                   ++ LL    L  K       +T+ I      ++  L  + ++   +       
Sbjct: 272  IKFDSAWQYDLLEGNTLYPKR------VTEAIASIIESIQPNLIDAFNKTKTLVFELKLK 325

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKID 174
            K F   +  L++   +       K++   +    LI   N ++        + +I  ++ 
Sbjct: 326  KGFYKNITPLSVLNAIQNELNALKEEQNKM----LISEFNKIISNEIKDQPTPFIYERLG 381

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            ++  H  IDE QDTS +QWE +  L ++         +  +   VGD KQ+IY + G E 
Sbjct: 382  EKFKHYFIDEFQDTSKMQWENLIPLLDNALSA-----TNGSTMLVGDAKQAIYRWRGGEA 436

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
            +   +   +  K       +  ++ L  ++RS  +I+   +  F         + +    
Sbjct: 437  E---QFIDLYNKTTNPFQVEAEVLVLDTNYRSAKEIIAFNNSFFDFLSRQYFSNSEYAEL 493

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
             +                   ++ +   + +     ++ D    + S  + A  +  TI+
Sbjct: 494  YKK------------------AKQNLSSDSEGYVNLNFLDIKKDDDSLELYASEVLKTIN 535

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
              I                 DI VLVRKRK+   I            I +  ++  +L +
Sbjct: 536  KCITNGFSLD----------DICVLVRKRKEGVTIANYLSE----KDIKITSSETLLLKN 581

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
               +  + +  + +L   +D   V +L           + +      + +    Y++K  
Sbjct: 582  SNKVVFINSFLKLLLQPNNDSLKVELLSF---------LAEQYHIEDKHQFFSSYLKKNL 632

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
            +      + +  +I++          ++    I+         + +  N+    L  +++
Sbjct: 633  DDMFEGLKSIQIFINK--DEFLQLPLYELVEHIIR--------VFKLNNDSDAYLQFYMD 682

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L   Q  +S+L   IS  E+    +      N N V+IMT+H +KGLE P+V      
Sbjct: 683  IVLEFTQKHHSNLTAFISYFEKKQDNLSIVSPENMNAVKIMTIHKSKGLEFPIVIFPFAD 742

Query: 595  SQVFSHKHIKKMHIMPSL---NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
              ++     K    + +      +  +  +    +   ++ +D+ +  +   + +   LL
Sbjct: 743  LNIYRELEPKVWFPVETEKYNGFENLLLNYGKDVELFGDVGNDIYQTHQSQLELDNINLL 802

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YV +TRA +QL +    + S++   N+ T+  M         +    +L  S  K     
Sbjct: 803  YVVLTRAIEQLYVISKKDMSSKDIVNKNTYAGMFISYLQQQNKWVDNQLNYSFGKLNPKE 862

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
                           +E +   +    +PK+                   +    K  L 
Sbjct: 863  NCL-----------EKEGVSNTLQFISVPKEDH----------------NLSIITKAGLL 895

Query: 772  SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
                  +   RG ++H +L  I T+        +         +   +    L   +T +
Sbjct: 896  WDTRQEKAIERGNLVHLVLSKIKTI--EDVVFSLNDLLASGGIII--ENKNELETIVTNV 951

Query: 832  LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVP 890
            +E+P +      D    V     I      ++   R D+I+I S+    I +YKT     
Sbjct: 952  VEHPKLAKYFQGDFK--VYNERDIITNSGQLL---RPDRINISSKNEAVIIDYKTG---- 1002

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYV-SEPKVFII 935
                     + +QL+ YE +L     N ++   LL+Y+     V  +
Sbjct: 1003 ----DQKSFYNSQLNDYEAVLNRM--NLNVTHKLLVYINDTIDVVEV 1043


>gi|167894600|ref|ZP_02482002.1| DNA helicase II [Burkholderia pseudomallei 7894]
 gi|167919264|ref|ZP_02506355.1| DNA helicase II [Burkholderia pseudomallei BCC215]
          Length = 787

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/736 (15%), Positives = 219/736 (29%), Gaps = 161/736 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVGGKAGSSLASFANLIAKMRAETARMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------ALESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++           A          
Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFARP 705

Query: 722 TPLEREETIKQLMDEQ 737
               R+  +   +   
Sbjct: 706 GGGARQGVVDAAVSAP 721


>gi|262199184|ref|YP_003270393.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
 gi|262082531|gb|ACY18500.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
          Length = 787

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 116/731 (15%), Positives = 222/731 (30%), Gaps = 122/731 (16%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           LS  F       QK ++   I +   + +   K    +  + + R               
Sbjct: 103 LSRDFTIFDSDDQKRLLNALIKEHGLEDQVSAKTLAVQIDRCKSRDEDPMDRHGGWGD-D 161

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L + +   Y+    +   +DF DL++   +L +   V       +    +H+L+DE QDT
Sbjct: 162 LLREIYPLYQAGMAQQGAVDFNDLLLKVLELARDPTVGPV----LSARFDHVLVDEFQDT 217

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q+ ++R   +            R L  VGD+ QSIYS+ GAEP+ +L  KR      
Sbjct: 218 NRVQFRLVRHFAD----------VSRNLTVVGDDDQSIYSWRGAEPRNLLEFKRDYP--- 264

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +++L  ++RST+ IL   + V +   N    +                 G  
Sbjct: 265 -----DAEVVKLEQNYRSTSVILDAANAVIAKNRNRHEKAL----------WTASDGGES 309

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LWE   S  +                          A  IA  I  ++  +        
Sbjct: 310 ILWEPCPSDRE-------------------------EATFIARAIRGLVSAENR------ 338

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 D+ +L R R  +  +    R     + I               +KD+++  R +
Sbjct: 339 ---DFSDMAILYRTRAQSRQLEEQLR----RFDIHYEIIGDVSFFQRREVKDIISYLRLL 391

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK--------FANCGIS 479
           +    DL+F  ++  P     +  + ++    R     ++E  +          A    +
Sbjct: 392 VQPNADLAFERIVNVPARGIGKTTVERVRDYARRAELPLFEAARACADGSGGSLAARARN 451

Query: 480 KFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNF 535
           K +  +  +  L   +A   S  +     +               E  +    L E +++
Sbjct: 452 KLRAFLDIVDGLRDVMAAGASVAEIVIQTVERSGYSAALTKEGTLEAEERLKNLSELVSW 511

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDT 593
               ++        L+  L           + + +   V++MT+H AKGLE PVVFL   
Sbjct: 512 GSSFDEEEGED-ASLVEFLANVALQSSGDKAESGDRGKVKMMTIHAAKGLEFPVVFLCGL 570

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F     +                                      T EE  RL YV
Sbjct: 571 EEGLFPSLRERD-------------------------------DQNDGDTLEEEYRLAYV 599

Query: 654 GMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            +TRA ++L++            +      + D + D             T +   D   
Sbjct: 600 AITRARERLVLTYAMQRMIWGETRSQRPSRFLDSIPDDCLAVRAEPPPPATTTHYDDYGS 659

Query: 711 AYEWSTHHPENTPLERE-ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                     +   +R   +    +      +  + P     +              + +
Sbjct: 660 TLRRRRRPAADEYDQRVYSSAGAEVVVSDGVEYEYEPGAGSRSGRAGARAGRGTRTARPS 719

Query: 770 LESLLSDNQTF 780
                   +  
Sbjct: 720 SPLRGVSPRGA 730


>gi|145631680|ref|ZP_01787443.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021]
 gi|144982703|gb|EDJ90239.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021]
          Length = 671

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 115/644 (17%), Positives = 222/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 E----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGTGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  ++++ I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L      +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSTIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|253996791|ref|YP_003048855.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
 gi|253983470|gb|ACT48328.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
          Length = 1118

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 147/974 (15%), Positives = 308/974 (31%), Gaps = 127/974 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
               ++       +   L P   F  S++     +++     T L +          Q + 
Sbjct: 230  ELEVAAQAVPFRLQHLLMPTARFAASNLPCDHPIALLVDWETPLAQ---------KQEVL 280

Query: 64   ERFSLLSSFFLTQKFTPQKN---------IITQEINKKSPDLKEKLKKSQD-----EFIK 109
              +  L+   LT    P+K            T E   +   L E +   +D         
Sbjct: 281  PMWCALAELLLTASGEPRKEGGLNVKVGFPATDEGRAQKTALVEIIHAVEDPAALYRVKS 340

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR-DVSAW 168
            + +  N    ++       L     A      ++   +DF ++       L         
Sbjct: 341  LPNLSNENASWQIITTLSKLLTLAVAELWLVFQRAGEVDFVEIAQRATHALSDHFGEPTE 400

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +  K+D +I H+L+DE QDTS  Q  +I  LT  +          RTLFAVGD  QSIY 
Sbjct: 401  LALKLDYQIQHLLVDEFQDTSPSQVALIEQLTLGWQFDDG-----RTLFAVGDPMQSIYR 455

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F  A     +                   ++L  + RS   I++ +++ F+         
Sbjct: 456  FRKANVGLFIEA-----ADNGIGNIHLERLQLYRNNRSCPAIISWINQTFAPIFPTHDEV 510

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                             G +     + ++ +                   E++A   A  
Sbjct: 511  TQ---------------GAIHYRPFIATKQELAEAGVVVHPLIKQADESYEAAAQREAEA 555

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +  TI             ++     + I VLVR +K    +    R  +    I     +
Sbjct: 556  VIRTIQE-----------ERNRYPGQKIAVLVRSKKHLSHLVSQLR--REHQDIPFQAVE 602

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY- 467
               L     ++DL++L   +  + D + ++ +L++P    +  D++++   R    TV+ 
Sbjct: 603  IEALEGRQIVQDLLSLMHALHHRADRVHWLAILRAPWCGLTLHDLYEL-AGRDHYRTVWS 661

Query: 468  -----EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                 E IQ+ ++ G ++  H+   + E            +   +     G      +  
Sbjct: 662  LMQDSEIIQRLSDDGQARLLHLRAVLTEAYVNQGRMGVSRWIRGVWLMLNGTDCLWDKAD 721

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
                  +  F       ++++  S + + SE+ +    +  A  +    +++MT+H +KG
Sbjct: 722  V---VDVQAFFTCLDGLDRSNQFSPERMESEITK----LFAAPDSQGEHLQMMTIHKSKG 774

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMP-------SLNDDPGIPIWIPQSKSRNNIVSDL 635
            LE   V L+  G+    +   K + +                      + K   +    L
Sbjct: 775  LEFDTVMLLGLGAPTGGNNTDKPLVLWEEVKTSYSHELLAAPYIPKGARDKDNVSPYDYL 834

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                K     E  R+LYV  TR   +L +   +N + + + +      +           
Sbjct: 835  ESREKARDANESARVLYVAATRVERKLHLFGIANQNAKGEISPTKNTYL----------- 883

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                         W               E+      + D      +L  P    + +  
Sbjct: 884  ----------DLLWNEVAPVFEADAQLAFEQPAQG-DIADFTPQLIRLAQPAVPVLLQTG 932

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITS 807
               PS      K +  S L      + G + H+ +++I                +  +  
Sbjct: 933  KAAPSYAKPNVKPSYHSSLE----ADAGTLAHRYMEMIAQQGVANWTATRVATLEAAMQH 988

Query: 808  YCTKNAKLWPAKEYKN--LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
            +  +      A       ++  + + L +      +     +E      I   ++D + S
Sbjct: 989  WLRQQGHTAAAANDAAVTVVRILQQTLNSADGQWVLQARHDAES--ELAITRTEQDKVKS 1046

Query: 866  GRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKDSYPNKSLV 921
              +D+  +     +I +YK+    P   E         + +QL  Y  +    +    + 
Sbjct: 1047 YVVDRTFVEDGVRWIIDYKSVRLAPDAAEYELNAATAPYRSQLENYAMLFA--HEGLPIK 1104

Query: 922  CLLIYVSEPKVFII 935
              ++++S  K+ ++
Sbjct: 1105 KAILFLSIGKLVLV 1118


>gi|167836886|ref|ZP_02463769.1| DNA helicase II [Burkholderia thailandensis MSMB43]
          Length = 669

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 107/662 (16%), Positives = 204/662 (30%), Gaps = 159/662 (24%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T +       L   YE+  ++  V+DF +L++  ++LL        +R  
Sbjct: 150 QGLRPDKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCHELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFENEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++ T           +   ++ VL R    +  I            I          
Sbjct: 334 IRSLVNTG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIPYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVTGKAGSSLSSFANLIAKMRAETAQMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFAAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------ALESDGLEEERRLMYVAITRAKERLY 645

Query: 664 IC 665
           + 
Sbjct: 646 LS 647


>gi|160895394|ref|ZP_02076164.1| hypothetical protein CLOL250_02952 [Clostridium sp. L2-50]
 gi|156862965|gb|EDO56396.1| hypothetical protein CLOL250_02952 [Clostridium sp. L2-50]
          Length = 1247

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 126/759 (16%), Positives = 246/759 (32%), Gaps = 68/759 (8%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSMETGN-----PTILKKAQTLQQASQTQCIEERFSLL 69
            I  D       Q     +    +             L+  + L+QA       +R S  
Sbjct: 225 QIVADTLDSAIGQAEQCLEIAGEADGPAGYDPIIRLDLELLRNLRQAEDMDEAYKRVSKF 284

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
           S+        P+K    +   +      + +         I        M     A L+L
Sbjct: 285 SNLKRIAACDPEKQQYVKTTMQTYRGSVKDMMALFRPTGVILSE--CAMMKGPLSALLSL 342

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLL---KKRD---VSAWIRYKIDQEINHILID 183
            +      +E K    + +F D+     D+L      +   + +     + +    ILID
Sbjct: 343 TRSYMERLKEEKLDRNLYEFRDISEFAYDILCAGTDENGCVIPSEAGKTVARRYREILID 402

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QD++ +Q +++  +T             + +F VGD KQSIY F  A P   L +   
Sbjct: 403 EYQDSNFLQEDILNCVT-------GHGEDRKNMFMVGDIKQSIYRFRMARPDLFLNKYNT 455

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              R          I L  +FRS   ++  ++++F    +      D   + +    R  
Sbjct: 456 YSDREDAED---QKILLSNNFRSAGKVIDTINQIFEPLMSENLGGIDYDESAKLHIGRQD 512

Query: 304 QV----GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
           +     G+  L  +       +  P++    +  D         I AR IA  I  ++  
Sbjct: 513 KNNMGYGSEILIVRNDCADSEKSQPEEIRSLTNVD---------IEARMIADEIYELVKG 563

Query: 360 DTIF-----SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           D         NG+ R +  +DI VL+R  K              +  I +         D
Sbjct: 564 DKPLYIPDGDNGETRRVSYRDIAVLMRSVKKNA---KAFEEAFAERGIPLFVESESGYFD 620

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
            + I  L+ +   I +   D +   +L+SPL    E ++ +I          +E      
Sbjct: 621 AIEISTLLDMLAVIDNSHQDYALAAVLRSPLAGVKEQELAEIVGIYDRDFKDHEKNLART 680

Query: 475 NCGISK---------------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-I 518
                K                +  ++ +        + S  +    IL           
Sbjct: 681 ASFYQKVCYYAEKPDSEASEELRQFLRMLDSWKADKNYMSISELLHSILEQTGYYWFVGA 740

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVR 573
            + G      +D  +      E +S+  L   +  +++                + + V 
Sbjct: 741 MQSGKRRQANIDMLIQKADTYEDSSFRGLFNFLRYMDRLKTNDLDFAEASVLGDDDDSVV 800

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE PVVF+    ++  +   +  + +               ++K +    +
Sbjct: 801 MMTMHKSKGLEFPVVFVSGLANRFSNLDALSPVTVNADSYLAGYAIDRKNRAKKKTFARA 860

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD---MVYDSFH 690
            ++  +      E  R+LYV ++RA ++L +         +K+          ++  S  
Sbjct: 861 AMLSVMNAEKLAEEIRILYVALSRAKEKLYMTAAVKDPGAEKAVFDYPLQTDFLIEASGQ 920

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
               +  I    +    +WI    S H      + R++T
Sbjct: 921 MRMELPYITRMEAGCFMDWILSALSMHIVSEDIVCRKDT 959



 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 68/204 (33%), Gaps = 23/204 (11%)

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIFTL-- 796
            K+L    + +        P T        L S + +   +    G +IHK++++I     
Sbjct: 1039 KRLAHRGEENPGSDLYQPPVTEAELTIPVLHSRMKEEPVKGNEMGTVIHKIMELIDFTRN 1098

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCD----SYSEVSV 851
               + +  I S+          +  +++    I  ++ +P+             Y E   
Sbjct: 1099 SMDEIREQIRSFFDH--GYLEERYREHVRADKIYNMVNSPLGIRMAEAQKNHTLYREQQF 1156

Query: 852  SGKINCPK---------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
               +               +++ G ID   +    + + +YKT      +I  +   +  
Sbjct: 1157 YIGMKPEDISPEYKDSKDMVVVQGVIDAYFLEGDQVVLMDYKTDRV--DQISDLVSRYHV 1214

Query: 903  QLSIYEKILKDSYPNKSLVCLLIY 926
            QL +Y K +      + +   +IY
Sbjct: 1215 QLDMYAKTIHQL-TGRMVTEKIIY 1237


>gi|34540779|ref|NP_905258.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family [Porphyromonas
           gingivalis W83]
 gi|34397093|gb|AAQ66157.1| ATP-dependent DNA helicase UvrD/PcrA/Rep Family [Porphyromonas
           gingivalis W83]
          Length = 765

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 117/753 (15%), Positives = 230/753 (30%), Gaps = 142/753 (18%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF-L 74
           I+    P     ++  NK      E     I   A  +Q  +            ++    
Sbjct: 46  IHSGYDPARLMALTFTNKAAKEMKERVASEIGPAAYRIQMGTFHSVFSRILRENATHLGY 105

Query: 75  TQKFTPQKNIITQEINKK------SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           T+ F+      T+ + +         D   +L   Q      +++  + + + +      
Sbjct: 106 TRDFSIYDTNDTKSLLRHVMKRMNIDDKVYRLNAVQHRISMAKNQLISPESYAANKDLSR 165

Query: 129 L--------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                       + + Y    K+N  +DF+DL+   N L +       +       I+++
Sbjct: 166 YDIDCRMPRMAEIYSLYTILCKQNNAMDFDDLLFKINVLFRDFPD---VLQTYRDRIDYL 222

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           LIDE QDT+  Q+ + R L  +             +F VGD+ QSIYSF GA+ + +L  
Sbjct: 223 LIDEYQDTNFAQYLIARQLMGE----------KGKVFVVGDDAQSIYSFRGAKVENILGF 272

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +              + +L  ++RST  I+   + + +  E        S   +  R  
Sbjct: 273 SKSFP--------GSKLFKLEENYRSTQSIVNAANSLIAHNEGRIPKQVFSNKQVGER-- 322

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                              L    S  + A  +A +I      +
Sbjct: 323 ---------------------------------IRLTGCLSGYLEAYTVADSIVERRMQE 349

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                         D  +L R    + +     R     + I               IKD
Sbjct: 350 H---------CPYSDFAILYRTNAQSRVFEEALR----KHNIPFRIYGGLSFYSRKEIKD 396

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------- 472
           ++A  R I++  DD +   ++  P     +  + ++       + ++++ + +       
Sbjct: 397 VLAYFRLIVNPNDDEALRRVINYPKRGIGDTTLSRLNEIATASSRSLWDVLSESQKGLPD 456

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVL 529
            +     +    +  I EL   +++ S ++    ++       +  S    E     + L
Sbjct: 457 LSATARRRLGEFVSLIRELQE-SEYESLYEQAADVVKRSGISAEIFSDKSIEGISRQENL 515

Query: 530 DEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            E LN           E+    SL   ++E+               + V +MTVH AKGL
Sbjct: 516 KELLNGIEEYGTSYAEERGEKPSLGTFLNEVVLLTDQDT--EGVVGDYVTLMTVHAAKGL 573

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   +F+V     +F                                          +  
Sbjct: 574 EFKHIFIVGMEENLFPSMMN-----------------------------------ATEQG 598

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            EE  RL YV +TRA +   I   +  S   ++ +      +      D+   + ++   
Sbjct: 599 LEEERRLFYVAITRAKESCHISFAAERSRNGRTERSRPSRFLQ---ELDDAYVERRVPQE 655

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
           +        E   H   +   ER    + +   
Sbjct: 656 MLGGHSQGDELPIHFSRSDAFERLPQPEPIRRR 688


>gi|293394677|ref|ZP_06638969.1| exodeoxyribonuclease V beta subunit [Serratia odorifera DSM 4582]
 gi|291422803|gb|EFE96040.1| exodeoxyribonuclease V beta subunit [Serratia odorifera DSM 4582]
          Length = 1186

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 132/965 (13%), Positives = 295/965 (30%), Gaps = 132/965 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
            E I   +  +     +      +L   +G       ++ L             +      
Sbjct: 226  EQIVARIEQIKAQWQAAAPDLEALISASGVDKRSYSSKHLPNWLGKVGEWSALATQDYQL 285

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
              +    +++ + ++  K  P               + D+  T +      A   +   +
Sbjct: 286  PKELEKFRQSTLLEKTKKGEPPRHP----LFVAIDSLFDQPLTLRDLIMARALSEIRTSI 341

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                ++ K++   L F+DL+   +  L+       +   I Q     +IDE QDT   Q+
Sbjct: 342  ----QQEKRQRAELGFDDLLGRLDAALQ-SAGGEQLAQAIRQRFPVAMIDEFQDTDPQQY 396

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             + + L                L  +GD KQ+IY+F GA+    +R +       T    
Sbjct: 397  RIFQKLY--------VGREQCGLLLIGDPKQAIYAFRGADIFTYMRARSEVSAHYT---- 444

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RS+  ++  V+K+FS         +     +   +   G          
Sbjct: 445  ------LETNWRSSPAMVDSVNKLFSQVGQPFLFGQIPFVAVAAAAKNQGLG-------- 490

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKK 368
               +  +   P    W    + +       ++AR  A  I + +         + +  ++
Sbjct: 491  --FELQATVQPALHFWLQQGEGVGVSDYQQMMARWCAAQIRDWLSAGQRGEAWLLNGAQR 548

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R +QA DI +LVR R +  L+      L      SV  ++R  + D    KDL+ L + +
Sbjct: 549  RAVQASDITILVRSRAEAALVRDALSQL---AIPSVYLSNRDSVFDTPEAKDLLWLLQAV 605

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L+ E + +    + + L       +  +       + +      + +      + V+  +
Sbjct: 606  LAPEQERTLRSAMATGLLGLDAPTLDALNHDERAWDLLVNEFDGYRSHWQR--RGVLPML 663

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL---NFTLRNEQNSYS 545
             E++              +L +  G ++            L E L   +  L +E     
Sbjct: 664  REVMTRRH------LAENLLASPGGERRLTDVM------HLGELLQETSAQLDSEHALVR 711

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             L + I++  +     +    ++ + V+++T+H +KGLE P+V+L   G+     + +  
Sbjct: 712  WLAQQIAQPNRQSDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVGNFRQQQQVLYH 771

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662
                              ++    N   + +   ++    E  RLLYV +TR+       
Sbjct: 772  DR-------------NNFKALLDLNANEESLAWAEEERLAEDLRLLYVALTRSVYHCSIG 818

Query: 663  ---IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-------DEWIAY 712
               +I        +   ++     +V      D    + +L             DE    
Sbjct: 819  IAPLIQGTRKKQGDTDLHRSALGYLVQAGQAGDASYLQQRLQQLTGDGVALSPVDEPDPQ 878

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKL------FSPIKNDINEPYILNPSTIDTKG 766
             W         L      +Q+ D  ++           + I  D+     ++ +      
Sbjct: 879  PWQAQAEAAAELTARRFTRQVQDYWRVTSYTGLQQHGAAGITQDLLPRLDVDAAGEQAAD 938

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                 +  +  +    G  +H L + +           +                ++ + 
Sbjct: 939  GEPALTPHTFPRGAAPGTFLHSLFETLDFSQPLDADWLLEQLRLHGYDDHWLPVLQDWMQ 998

Query: 827  SIT-RLLENPM--MTTAMSCDSYSEVSVSGKINCPKK----------------------- 860
             +    L +    +         +E+     I    +                       
Sbjct: 999  VLLHTRLNDSGVSLAMLAPQAKQAELQFYLPIGDLLRADALDALTKRYDPLSARCPALDF 1058

Query: 861  ---DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSIYE 908
                 ++ G ID +   Q   ++ +YK++        +           + +  Q  +Y 
Sbjct: 1059 QQVQGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTQPAMAQAMAEHRYDLQYQLYT 1118

Query: 909  KILKD 913
              L  
Sbjct: 1119 LALHR 1123


>gi|262273633|ref|ZP_06051447.1| ATP-dependent DNA helicase Rep [Grimontia hollisae CIP 101886]
 gi|262222611|gb|EEY73922.1| ATP-dependent DNA helicase Rep [Grimontia hollisae CIP 101886]
          Length = 672

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 102/653 (15%), Positives = 214/653 (32%), Gaps = 123/653 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  +E++     L+  L    +    +                  L  +  A Y++  
Sbjct: 118 KDLTEKELDGDKDLLRLLLHTISNWKNDMLTPQQAQSAAMGERD--QLFAHCYAKYQKQM 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    LDF+DLI+    LLK  +    +R +   +I ++L+DE QDT+  Q+++++ L  
Sbjct: 176 KAYNALDFDDLILMPVILLKTNEE---VRERWQSKIRYLLVDEYQDTNTSQYQLVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA+PK +L   +              +I+L 
Sbjct: 233 E----------RARFTVVGDDDQSIYSWRGAQPKNLLMLSQDFPA--------LKVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST+ IL   + + +   +    +  S                              
Sbjct: 275 QNYRSTSRILRAANILIANNPHVFEKTLFSALP--------------------------- 307

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                         + + ++    A R+            + ++        KD  +L R
Sbjct: 308 --------DGEMLKVLKANNEEHEAERVV---------GELIAHKFMNRTHYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L            +I    +          IKD+MA  R + + +DD +F+ ++
Sbjct: 351 GNHQSRLFEKAL----MQNRIPYKISGGTSFFARTEIKDIMAYLRLLTNPDDDNAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHI 494
             P        + K+        ++++    +               Q   ++I EL   
Sbjct: 407 NVPRREIGPVTLEKLGTYANMRGKSLFAASFELGLQTHLSGRGLESLQRFTRWIVELSDQ 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTL-----RNEQNSY 544
            +     D    ++                +     +  + +  ++ +      N+ N  
Sbjct: 467 FERGDAVDAVRSLVRDSHYEDWLYETSSSPKAAEMRMKNVSDLYSWIVADLEGDNDDNEV 526

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            +L+E++  L       +     + ++V++MT+H +KGLE P V+LV     +  H+   
Sbjct: 527 KTLREVVQRLTLRDMMERGEDDDDADQVQLMTLHASKGLEFPYVYLVGMEEGLLPHQSSI 586

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                               +   EE  RL YVG+TRA  ++  
Sbjct: 587 D-----------------------------------EDNVEEERRLAYVGITRAQKEMTF 611

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                     +  +      + +  ++D   ++ K   +  +          +
Sbjct: 612 TLCKERRQYGELIKPMPSRFLEELPYDDVEWEEKKKPQTQEERMAKGQAAIAN 664


>gi|253991590|ref|YP_003042946.1| DNA-dependent helicase II [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211638468|emb|CAR67090.1| dna helicase ii (ec 3.6.1.-) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783040|emb|CAQ86205.1| DNA helicase II [Photorhabdus asymbiotica]
          Length = 723

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 95/529 (17%), Positives = 182/529 (34%), Gaps = 82/529 (15%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+EA  +  ++DF +L++  ++L   +     I         +IL+DE QDT+ IQ
Sbjct: 176 VYLAYQEACDRAGLVDFAELLLRAHELWLNKP---QILQHYRGRFTNILVDEFQDTNSIQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  I  L  +             +  VGD+ QSIY + GA+ + + R  +          
Sbjct: 233 YAWIHLLAGE----------TGNVMIVGDDDQSIYGWRGAQVENIQRFLKDF-------- 274

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST++IL V + + +   +  G +                     LW 
Sbjct: 275 SGAETIRLEQNYRSTSNILKVANTLIANNSDRLGKN---------------------LW- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +  S  S F+ L +       AR +   I N +               
Sbjct: 313 ------TDGVEGEPISLYSAFNELDE-------ARYVVSRIKNWLENGGAL--------- 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K+  +L R    + ++            +           +   IKD +A  R I ++ 
Sbjct: 351 -KNCAILYRNNAQSRVLEEAL----LQASMPYRIYGGQRFFERQEIKDALAYLRLIANRN 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R   +T+++  Q        A    S  Q  +
Sbjct: 406 DDAAFERVVNTPARGIGDRTLDIVRQAARERQKTLWDCCQILLQEKALAGRAASSLQRFL 465

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-Q 541
           + I  L    +    H     ++     R  +    G +     + L+E +  T +   Q
Sbjct: 466 ELIEALSTETEDMPLHIQTDRVIRDSGLRTMYQQEKGEKAQARIENLEELVTATRQFSYQ 525

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    L  L + L        +     + + V++MT+H+AKGLE P VF+V     +F  
Sbjct: 526 DEDEDLMPLQAFLSHAALESGEGQADDSQDSVQLMTLHSAKGLEFPQVFIVGMEEGMFPS 585

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +   +                    +      ++  +   K      +R
Sbjct: 586 QMSIEEGGRLEEERRLAYVGLTRAMEKLTITYAESRRLYGKEVYHRPSR 634


>gi|159902871|ref|YP_001550215.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211]
 gi|159888047|gb|ABX08261.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211]
          Length = 809

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/633 (17%), Positives = 219/633 (34%), Gaps = 99/633 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   + + Y +A   N  LDF+DL++    LLK+ +    +R        H+L+DE QD
Sbjct: 207 KLIAQVYSLYRKALAANNALDFDDLLLLPVQLLKQNE---QVRSYWHNRFKHLLVDEYQD 263

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  +       +  S R++F VGD  QSIYSF  A+ + ++  +   + 
Sbjct: 264 TNWTQYELIKLLVTNGINPSFFSSWSKRSVFVVGDADQSIYSFRAADFRILMGFQEDFKN 323

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           + +  G   ++++L  ++RST+ IL   + + S  +        +T              
Sbjct: 324 KNSLQGLS-NVVKLEENYRSTSTILDAANSLISNNKERLDKVLKATR------------- 369

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +    T   D + +       A  + + +  +          
Sbjct: 370 ---------------GEGELIKLTRCDDEISE-------AEAVVHRLRLL--------EA 399

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
             + ++  DI +L R    + +I          + I  +        D   +KD++A  R
Sbjct: 400 HNKDLKWGDIAILYRTNAQSRVIEESL----VRWNIPYIVVGGLRFYDRREVKDILAYLR 455

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + +L  P     +  + +      +    ++      E I+        
Sbjct: 456 LLINPSDSVSLLRILNVPKRGIGKTTVQRFSDASSQLGIPLWEVVSDPEAIRSLGGRSAK 515

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFT 536
                 + I +L        P     L++       + I+       E    L E +N +
Sbjct: 516 GLLKFKELIDDLRLSLNNTEPSQLIQLVMEKSGYISELIATATDEAEERRRNLQELVNAS 575

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N  + L+  ++         K+     H+ + +MT+H++KGLE P+V LV    
Sbjct: 576 LQYQEENEAADLEGFLATAALASDADKKD--TAHDRITLMTLHSSKGLEFPIVCLVGLEQ 633

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 634 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGL 659

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   +         +     +      ++     I+L            +  
Sbjct: 660 TRAKERLFLFHATERRIWGGMREPAVSSIFLSEIPSELIEGDIQLAGGAALRRERRMDRL 719

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
           T             I + +    + +K   P  
Sbjct: 720 TRVDRREDQLNSSGISKNLPTNAVRRKYSGPAP 752


>gi|90413496|ref|ZP_01221487.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK]
 gi|90325428|gb|EAS41911.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK]
          Length = 1227

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 151/992 (15%), Positives = 297/992 (29%), Gaps = 154/992 (15%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS 70
                 K LW      +  +     ++  +     L    AQ  Q A+Q     E    L 
Sbjct: 251  RIDAIKALWREHEADLEPLIANSGVNKRSYTKKSLPTWLAQVSQWAAQPTDSYELPDKLD 310

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              F  Q    +        +     + E L    +    +          +     L   
Sbjct: 311  R-FHQQTLIEKTAKGEAPEHAVFVAIGELLDNPANLHDPLM-----AHAIEQCRVLLA-- 362

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                    +AK++   L F+DL+   +  +   D    +  +I  +    +IDE QDT  
Sbjct: 363  --------QAKERKGWLSFDDLLTQLSAAI-DNDQDDLLAGRIRSQYPVAMIDEFQDTDP 413

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q+ +  ++                LF +GD KQ+IY+F GA+    ++ +R      T 
Sbjct: 414  QQYSIFSNIYR--------AQPECGLFMIGDPKQAIYAFRGADIFTYIQARRQVHDHYT- 464

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                     L  ++RSTAD++  V+ VF+ PE+      D        +           
Sbjct: 465  ---------LDTNWRSTADMIASVNSVFARPESP--FIYDQDIQFLSVNHSPKAPDRSWW 513

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI-SNMIGTDTIFSNGKKR 369
             +       +  +              QE+ A+  A +I   +     G+        K+
Sbjct: 514  LDNQAQHALTFWHQDSVDGKPVTKGRYQEAMANATAAQIQNVLTQAEQGSAFFQDKDSKK 573

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             IQA DI VLVR   +  LI    + L      SV  ++R  +       D+  L + +L
Sbjct: 574  AIQASDIAVLVRTGNEGKLIR---KALSEQGIASVYLSNRDSVFSTAEAADIQRLLQAVL 630

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
            + EDD +    L S LF  +  ++ ++                      + ++  I    
Sbjct: 631  TPEDDRALRAALASSLFALTAVELDELNNS------------------ENAWEAAINNFK 672

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYS 545
            +                ++  +K  +  ++  G E        + E L    +   + Y 
Sbjct: 673  DYRKQWLTRGVMAMIRSVMAKEKMAENLLAEEGGERRLTDLLHIAELLQEASQTLDSDYG 732

Query: 546  SLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
             L+ L   + +             +  N V+I+T+H +KGLE  +VF+    S     + 
Sbjct: 733  LLRWLAEHVAEPNGNAEDQVLRLESERNLVQIVTIHKSKGLEYDLVFMPFVCSY---REV 789

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
              K  +      +    + I +           I+   K    E  RL+YV +TRA    
Sbjct: 790  DSKGEVKYHDEAENITVLDIAKQTD-------SIEKADKERLAEDLRLIYVALTRAVYGC 842

Query: 663  II-CKHSNTSNEKKSNQRTWYDMVYDSFHND----------------ERVKKIKLTNSIN 705
             I           K      +  +     N                 E    I +     
Sbjct: 843  YIGMAPIRNGRSTKEPTGLHHSAMGHLIQNGKEGTIADLELALAKLAESQPAITIAEPPV 902

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
              E           E +P +   ++++          +    +   +    L    I++ 
Sbjct: 903  LPEDKWQPREQEDAELSPNQFTMSLERNWWMTSYSSLVKQGHQAYHDSSLDLPGFDIESA 962

Query: 766  GKTNLESLLS------------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
             +T ++   S                    +    G  +H + + I           + +
Sbjct: 963  VETAIDGETSADHDGNLVELEPEYSIYTFPRGARPGTFLHTVFEEIEFTAPVDSPETVAT 1022

Query: 808  YCT----KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSV--------- 851
                   +N  L      + L+  +     + +    +        +E+           
Sbjct: 1023 LTDLLQKENYDLVWLPVLQQLIKDVLNCSLDGLGMKLVDKNPSQRLTEMEFLLPITLLSS 1082

Query: 852  ----------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---- 891
                            +G++       ++ G ID +       ++ ++K++H        
Sbjct: 1083 RMLNKVIAKHDTVSAKAGELGFATVSGMLKGFIDLVFEHDGKYYVLDWKSNHLGDDPSVY 1142

Query: 892  EIEHIPY-----THIAQLSIYEKILKDSYPNK 918
              E +        +  Q  IY   L+    ++
Sbjct: 1143 RGEQLVEAMRDHRYDLQYQIYALALQRFLRSR 1174


>gi|76811011|ref|YP_333248.1| DNA helicase II [Burkholderia pseudomallei 1710b]
 gi|126453724|ref|YP_001065963.1| DNA helicase II [Burkholderia pseudomallei 1106a]
 gi|134282378|ref|ZP_01769083.1| DNA helicase II [Burkholderia pseudomallei 305]
 gi|167846029|ref|ZP_02471537.1| DNA helicase II [Burkholderia pseudomallei B7210]
 gi|167903003|ref|ZP_02490208.1| DNA helicase II [Burkholderia pseudomallei NCTC 13177]
 gi|167911242|ref|ZP_02498333.1| DNA helicase II [Burkholderia pseudomallei 112]
 gi|217423664|ref|ZP_03455165.1| DNA helicase II [Burkholderia pseudomallei 576]
 gi|226192893|ref|ZP_03788505.1| DNA helicase II [Burkholderia pseudomallei Pakistan 9]
 gi|242316612|ref|ZP_04815628.1| DNA helicase II [Burkholderia pseudomallei 1106b]
 gi|254180038|ref|ZP_04886637.1| DNA helicase II [Burkholderia pseudomallei 1655]
 gi|254188552|ref|ZP_04895063.1| DNA helicase II [Burkholderia pseudomallei Pasteur 52237]
 gi|254261076|ref|ZP_04952130.1| DNA helicase II [Burkholderia pseudomallei 1710a]
 gi|76580464|gb|ABA49939.1| DNA helicase II [Burkholderia pseudomallei 1710b]
 gi|126227366|gb|ABN90906.1| DNA helicase II [Burkholderia pseudomallei 1106a]
 gi|134246416|gb|EBA46505.1| DNA helicase II [Burkholderia pseudomallei 305]
 gi|157936231|gb|EDO91901.1| DNA helicase II [Burkholderia pseudomallei Pasteur 52237]
 gi|184210578|gb|EDU07621.1| DNA helicase II [Burkholderia pseudomallei 1655]
 gi|217393522|gb|EEC33543.1| DNA helicase II [Burkholderia pseudomallei 576]
 gi|225934983|gb|EEH30958.1| DNA helicase II [Burkholderia pseudomallei Pakistan 9]
 gi|242139851|gb|EES26253.1| DNA helicase II [Burkholderia pseudomallei 1106b]
 gi|254219765|gb|EET09149.1| DNA helicase II [Burkholderia pseudomallei 1710a]
          Length = 787

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 112/736 (15%), Positives = 220/736 (29%), Gaps = 161/736 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
             A    S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVAGKAGSSLASFANLIAKMRAETARMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------ALESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++           A          
Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFARP 705

Query: 722 TPLEREETIKQLMDEQ 737
               R+  +   +   
Sbjct: 706 GGGARQGVVDAAVSAP 721


>gi|269468160|gb|EEZ79862.1| ATP-dependent DNA helicase [uncultured SUP05 cluster bacterium]
          Length = 1058

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 149/905 (16%), Positives = 298/905 (32%), Gaps = 137/905 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDL------KEKLKKSQDE 106
                 +  LSS  L +    +K++          +   +    +      +E L +    
Sbjct: 262  EDLSVWKDLSSLCLKKDGLWRKSLNKNNGFPPELKVQKQAFEKILQTLGARESLTQLLGG 321

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              ++ D   +    ++      + K   A      ++    DF ++ +  +  L  R   
Sbjct: 322  VNRLPDVDFSELEIQALQDIAQVLKLCVARLNLLFEREQAHDFIEVALRADHALDDRSNI 381

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
            + +   +D ++ HILIDE QDTS  Q+ +I+ L   +          RTLF VGD  QSI
Sbjct: 382  SDMALFLDYKVQHILIDEFQDTSASQFNLIKKLIFHWQADDG-----RTLFLVGDPMQSI 436

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F  ++    L+ K         A      ++L  +FRS+  I+   ++ F        
Sbjct: 437  YRFRESQVGLFLQVKAK-----GIANTMPKSLKLSTNFRSSKSIVAGNNRFFEKIF---- 487

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                   +++  +   +S  +    +  +              A
Sbjct: 488  ------------------PHEEDVYQGAIRYSESISDSDLTNDHAIVFHPFAHDQYQAEA 529

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +   I+N +  +              +I +LVR R     I  + +     + I    
Sbjct: 530  VSVLEIINNALSENPK-----------GEIAILVRTRSHLSDIVDVLKV----HGIDFES 574

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----E 462
                 L DHL I+DL++L + +L   D L+++ +L++P      +D+            E
Sbjct: 575  IKTNPLKDHLLIRDLLSLTKALLHLGDKLAWLSVLRAPWCGLLLEDLLVFSEHDDLIIYE 634

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              +  + + +    G  + QH+ + +  +I+        +  T  +         +    
Sbjct: 635  QLSDPKILNQLTQDGKKRAQHIAQSLSSVINNQARFDFVEILTHAIDQLG----IVPSLS 690

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
             + + + ++FL      E     +++ + + LE           +   +V++MT+H +KG
Sbjct: 691  PQELMIKNQFLQIIFDCESQQLLNIETIEATLEDLY------APSKTAQVKLMTIHQSKG 744

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE   V +   G +  S           +       PI        +N  + L     + 
Sbjct: 745  LEFDTVIIPGLGRKPRSDNAPIMRMREFANRSLLLAPIKSFTDSEDSNTYNYLKFIESQQ 804

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             + E  RLLYV MTRA + L +      +N+  +N ++  +M+   +        I    
Sbjct: 805  DKFETMRLLYVAMTRAKNNLHLLGALTKNNK--ANAKSLLNMLMQFYEGHFDDVDIDNQQ 862

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
               K           H ++   E     + +   +K      S                 
Sbjct: 863  DAIKSLDAPKLERFTHLKSVLQEENGQGESVEYNKKFELLFKS----------------- 905

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                                G ++H+  +     P+ K                   +  
Sbjct: 906  ------------------LLGTLVHQYYEQGLFNPDKKNVE-----IKLIESGISPNDLD 942

Query: 823  NLLLSITRLLE----NPMMTTAM--SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
                 + +LL+    +            +  E            D +I+  ID++ I   
Sbjct: 943  QYAQYVIKLLDSTKQDSQFEWLFKQRESTLVEAEFV------NGDTVIA--IDRLFIDDD 994

Query: 877  NIFIFEYKTHHHVPQEIE-----HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
             ++I ++KT   +  E E          H  QL  Y+++L   YPN ++ C L   +  K
Sbjct: 995  VLWIIDFKTASLLDDESESQFVQRQKSEHTKQLLFYQEVLSKIYPN-NIKCALYCPAVQK 1053

Query: 932  VFIIP 936
            +  I 
Sbjct: 1054 IIEIS 1058


>gi|319897816|ref|YP_004136013.1| DNA helicase and single-stranded DNA-dependent atpase [Haemophilus
           influenzae F3031]
 gi|317433322|emb|CBY81698.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus
           influenzae F3031]
          Length = 671

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 116/644 (18%), Positives = 224/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R +   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RTYNALDFDDLIMLPTLLFKQNEE---VRSRWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 E----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGKGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  ++++ I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKTYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L A    +       N          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSAIHYEEYLYEYATNPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|145635681|ref|ZP_01791377.1| ATP-dependent DNA helicase rep [Haemophilus influenzae PittAA]
 gi|145267076|gb|EDK07084.1| ATP-dependent DNA helicase rep [Haemophilus influenzae PittAA]
          Length = 671

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 116/644 (18%), Positives = 219/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--GAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 E----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGEGEKLLIIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
            +P        + K+     E           +E IQ+         Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFNAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L      +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSVIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TR   +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRTQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELIRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|68249227|ref|YP_248339.1| ATP-dependent DNA helicase [Haemophilus influenzae 86-028NP]
 gi|68057426|gb|AAX87679.1| ATP-dependent DNA helicase rep [Haemophilus influenzae 86-028NP]
          Length = 670

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 117/644 (18%), Positives = 223/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 E----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGTGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDGAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  ++++ I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L A    +       N          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSAIHYEEYLYEYATNPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|317011613|gb|ADU85360.1| DNA helicase II [Helicobacter pylori SouthAfrica7]
          Length = 681

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/573 (17%), Positives = 187/573 (32%), Gaps = 120/573 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    +  +I +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNE---KLAKEISERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKRLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +  S           G   +V   E 
Sbjct: 257 GAKVVKLETNYRSSAEILECANALISHNQHRHKKTLQS---------FKGSHKSVICKEY 307

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           +  + +S                            +AY I  ++       N        
Sbjct: 308 LTQKEESLD--------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHAVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K         +  + 
Sbjct: 388 RFFIKRVLNKPPRGLGKITQELIFSLLDEEDLNLEEALKLEAFKDKLNPKNEYALKKFMA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSY- 544
            I  L   A   S   F    L      + +       E    + E L+    + + +  
Sbjct: 448 MIGRLRE-AFGISVEKFCERFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            SL +           +   ++ N  +V  M+VH +KGLE   VF++      F H    
Sbjct: 507 HSLLDF-----LNESVLNVHNTENTRKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH---- 557

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                              ++S  EE  RL YV +TRA ++L +
Sbjct: 558 -------------------------------RGFNQESDLEEERRLAYVAITRAKEELQL 586

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                 S   +         + ++    +    
Sbjct: 587 SYVKERSYFGRKIACLPSSFLEEAKLLQQNKPP 619


>gi|301169366|emb|CBW28966.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus
           influenzae 10810]
          Length = 670

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 115/644 (17%), Positives = 224/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R +   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRSRWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 E----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    ++       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNDHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGKGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  ++++ I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L A    +       N          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSAIHYEEYLYEYATNPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTHLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|170732770|ref|YP_001764717.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
 gi|169816012|gb|ACA90595.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
          Length = 787

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 117/749 (15%), Positives = 223/749 (29%), Gaps = 161/749 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T         L   Y++  ++  V+DF +L++   +LL      A +R  
Sbjct: 150 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  + 
Sbjct: 257 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + S+ S  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EASTDSQEAGWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I T           +   ++ VL R    +  I            I          
Sbjct: 334 IRSLINTG----------MARSEVAVLYRSNAQSRSIEHTL----MSSGIPYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        + ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSVEQLADAARLYGCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        I ++    Q  +  D    I+ A      +   R G + ++ L 
Sbjct: 440 YVTGKAGTSLGGFANLIAKMRADTQHMNLPDTVEHIVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFIAEEGYGLDTPARSIPLRAGAIAAPELGTATDDPAVDVLDPASPADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFAAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++  +        A          
Sbjct: 646 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRSDNAGYGRDWFARP 705

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKND 750
               RE+ +   +              + 
Sbjct: 706 GGGSREQIVDAAVSAPLPAFADKQRAADA 734


>gi|332171921|gb|AEE21175.1| DNA helicase II [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 724

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/741 (13%), Positives = 230/741 (31%), Gaps = 132/741 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    ++                +  + + LQ ++ +      
Sbjct: 30  GAGSGKTRVLVHRIAWLMEVEGIAPWGILAVTFTNKAAREMRGRIEELQGSALSNMWIGT 89

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  ++   L     +    +N    + + +   ++  +K    +  +   +   + +  +
Sbjct: 90  FHGIAHRLLRTHYAEAKLPENFQILDSDDQYRLVRRVIKSMNLDEKQWAPKHVQWYINGN 149

Query: 123 TLASLTL-------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
               L                  +   Y++  ++  ++DF +L++  + L  +      +
Sbjct: 150 KDEGLRPEHIDTHGDYNQKKLCEIYQVYQQTCERAGLVDFAELLLRAHQLWVENPE---L 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                     +L+DE QDT+ IQ+  +R L                +  VGD+ QSIY +
Sbjct: 207 LKHYQNRFRAVLVDEFQDTNNIQYAWLRLLAA----------PTNNMIIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + +    R   K           I L  ++RST +IL   + V    +   G   
Sbjct: 257 RGANVQNIQHFLRDYPK--------AKTIRLEQNYRSTGNILKAANAVIDNNQGRLGK-- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW           + +  S  + F+ L +       AR  
Sbjct: 307 -------------------ELW-------TEGADGEPISLYAGFNELDE-------ARFA 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I +                   D  +L R    + ++            ++      
Sbjct: 334 VSRIKDWQTQGYAL----------SDCAILYRNNAQSRVLEEAL----LQESVAYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   I+D +   R I  Q DD +F  ++ +P     +  + ++    +    ++++
Sbjct: 380 LRFFERQEIRDALGYLRIINQQIDDAAFERVVNTPTRGIGDKTLAQVREQAKESDLSMWQ 439

Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                   ++ +    +  Q  I  +  L    Q          ++        + +  G
Sbjct: 440 ASLQLLREKRLSGRAANALQGFIDLVLLLQKDTQDLPLEQHADHVIKHSGLYAMYKAEKG 499

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +     + L+E +    +        ++  + + L              + + V++MT+
Sbjct: 500 EKAQARIENLEELVTACKQFAPPEEAENMSPMSAFLAHASLEAGDAQADKHQDAVQMMTI 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           HTAKGLE P+V LV     +F  +                                    
Sbjct: 560 HTAKGLEFPMVLLVGVEEGMFPSQMSNDEPG----------------------------- 590

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVGMTRA  +L +    +     +    T    + +         +
Sbjct: 591 -----KIEEERRLCYVGMTRAMQKLFLTYAESRRVYGQDKYHTPSRFIKEIPSEYIEEVR 645

Query: 698 IKLTNSINKDEWIAYEWSTHH 718
           ++   ++ +     ++ S  H
Sbjct: 646 LRTKATVARPMQSRFQSSASH 666


>gi|83858903|ref|ZP_00952425.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633]
 gi|83853726|gb|EAP91578.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633]
          Length = 766

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 106/599 (17%), Positives = 186/599 (31%), Gaps = 114/599 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ L   Y++        DF DL+++   + +  D    +     ++  ++L+DE QDT+
Sbjct: 188 AQKLYKLYQDRLSVLNACDFGDLLLHNITIFQNHDD---VLADFHRKFRYLLVDEYQDTN 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q+  +R L                +  VGD+ QSIY + GAE   +LR ++       
Sbjct: 245 VAQYLWLRLLAR----------GSGNVCCVGDDDQSIYGWRGAEVDNILRFEQDFP---- 290

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 ++I L  ++RST  IL     + +  +   G +  +     H+    G      
Sbjct: 291 ----GATVIRLERNYRSTGHILGAAAGLITANKARLGKTLWTEDQAGHKVQVSG------ 340

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW+                                 AR +A  I   I            
Sbjct: 341 LWDG-----------------------------EAEARFVADEIEAHIKGGG-------- 363

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  DI VLVR              L     +           +   I+D +A  R + 
Sbjct: 364 --RHSDIAVLVRASWQMRAFEDRFIML----GLPYKVIGGPRFFERAEIRDALAYLRLVR 417

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQ 482
           S  DDL+F  ++ +P     +  + KI            E   +     +    G +   
Sbjct: 418 SLSDDLAFERVVNTPKRGVGDTSVQKIAMAARGAQVSMAEAARLMTQTDEIKGKGRTGLI 477

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             ++ +      A+     +   +IL        +      +    LD            
Sbjct: 478 AFLRDLERWAEQAETMRHDELAEVILDESGYTAMWREDKSPQAAGRLDNLKELVRSM--G 535

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            + SL+  +  +           + N +EV IMT+H AKGLE P+VFL      VF  + 
Sbjct: 536 EFDSLEAFLEHIALVSDA---DRTENGDEVSIMTLHAAKGLEFPLVFLPGWEETVFPSQR 592

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                            +     +  EE  RL YVG+TRA ++ 
Sbjct: 593 S--------------------------------MDEGGTAALEEERRLAYVGITRARERA 620

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +I   +N     +         + +        K                E +     +
Sbjct: 621 VISFTANRMIFGRWQSVLPSRFIDEMPAEHCEAKSETGYYDAGPGFEGVAEVADPFKSS 679


>gi|192292387|ref|YP_001992992.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
 gi|192286136|gb|ACF02517.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
          Length = 848

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 103/586 (17%), Positives = 179/586 (30%), Gaps = 147/586 (25%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+E  K     DF DL++    L ++      +          IL+DE QDT++ Q
Sbjct: 204 LYAQYQERLKILNAADFGDLLLENIRLFREHPD---VLRSYQNRFKFILVDEYQDTNVAQ 260

Query: 193 WEVIRSLTEDFFVG-------------------------------------KNTHSSPRT 215
           +  +R L++                                           +T + P+ 
Sbjct: 261 YMWLRLLSQTPSSSSLPGSTRQSISSQEDGSPGLAASRRPGDDVETSGNVVASTSAPPKN 320

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +  VGD+ QSIY + GAE   +LR                 +I L  ++RST  IL    
Sbjct: 321 ICCVGDDDQSIYGWRGAEVDNILRFDHDFP--------GAKVIRLERNYRSTGHILAAAS 372

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            + +  E   G +                                  + +  + T  +DS
Sbjct: 373 HLIAHNEGRLGKTL----------------------------RTEDVDGEMVTVTGAWDS 404

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +       AR I   I  +                  +I +LVR              
Sbjct: 405 EEE-------ARAIGEEIEQLQRQGHAL----------NEIAILVRASFQMREFEDRFVT 447

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
           L     +           +   I+D +A  R I S  DDL+F  ++  P     +  +  
Sbjct: 448 L----GLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNVPKRGLGDATVQM 503

Query: 456 IC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +    R     ++E  +      +      S  + +I+            +  +   ++L
Sbjct: 504 LHDHARKRRIPLFEAARMVIDTDELKPKARSSLRGLIENFERWQVQRDALAHTELAEIVL 563

Query: 509 GAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
                 + +      +     + L E +      E         L   LE     + R  
Sbjct: 564 DESGYTEMWQKDRSADAAGRLENLKELVRSMEEFEN--------LQGFLEHISLVMDREG 615

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            A+ + V +MT+H+AKGLE   VFL      +F H+                        
Sbjct: 616 GADEDAVSVMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------- 652

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                     +    ++  EE  RL +VG+TRA  +  +   +N  
Sbjct: 653 ---------ALDEQGRAGLEEERRLAHVGITRARKRAKLYFATNRR 689


>gi|145633860|ref|ZP_01789582.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
 gi|144985302|gb|EDJ92141.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655]
          Length = 670

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 116/644 (18%), Positives = 222/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I + L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRSKWQAKIRYFLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 E----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGKGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  +++E I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQKKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L      +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSVIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|308064238|gb|ADO06125.1| DNA helicase II [Helicobacter pylori Sat464]
          Length = 681

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/572 (16%), Positives = 183/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVGFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIK 486
                 +L  P     +     I +    E   + E ++      K            I 
Sbjct: 388 RFFIRRVLNKPSRGLGKITQEWIFSLLDGEGLNLEEALKLGVFKGKLNPKNEHALNKFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F    L      + +       E    + E L     + + + +
Sbjct: 448 MIGRLRE-AFEISVEEFCARFLEETNLLKSYEKEDNYEEREGFVKELLALVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVQERSYFGRKISCSPSVFLEEAKLLKQDNPP 619


>gi|145629666|ref|ZP_01785463.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21]
 gi|144978177|gb|EDJ87950.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21]
          Length = 671

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 117/643 (18%), Positives = 219/643 (34%), Gaps = 123/643 (19%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             +T ++ K+  DL  +L      +                 A           Y    +
Sbjct: 118 KELTADVLKEDKDLLSELISVISNWKNNLISPKQAFALAR-DAKYQTFAKCYERYAIQIR 176

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  +
Sbjct: 177 AYNALDFDDLIMLPTLLFKQNEE---VRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVGE 233

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                           VGD+ QSIYS+ GA P+ ++R +    +         ++I+L  
Sbjct: 234 ----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLEQ 275

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RST  IL   + +    E+       S                               
Sbjct: 276 NYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------T 305

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             + E          +  +  I+A  IA+                 R  + KD  +L R 
Sbjct: 306 IGEGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYRG 351

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++ 
Sbjct: 352 NHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIVN 407

Query: 443 SPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHIA 495
           +P        + K+    + +  +++E I +F              Q   ++I EL    
Sbjct: 408 TPKREIGTATLQKLGELAQEKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDEI 467

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYSS 546
           Q   P      +L A    +       +          +    ++        E N   +
Sbjct: 468 QRSEPERAVRSMLSAIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPMN 527

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++ L       +       ++V++MT+H +KGLE P V+L+     +  H+     
Sbjct: 528 LNQVVTRLTLRDMLERGEDDDESDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID- 586

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI--I 664
                                             +   EE  RL YVG+TRA  +L   +
Sbjct: 587 ----------------------------------EDNVEEERRLAYVGITRAQKELTFSL 612

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           C+  +   E    + + +     +        K KLT    ++
Sbjct: 613 CRERHQYGELIRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|145639403|ref|ZP_01795008.1| ATP-dependent DNA helicase [Haemophilus influenzae PittII]
 gi|145271450|gb|EDK11362.1| ATP-dependent DNA helicase [Haemophilus influenzae PittII]
          Length = 671

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 116/644 (18%), Positives = 222/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRAKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 E----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGKGEKLLVIKAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  +++E I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQKKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L      +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSVIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +       ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDESDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELIRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|53725443|ref|YP_102655.1| DNA helicase II [Burkholderia mallei ATCC 23344]
 gi|67642678|ref|ZP_00441431.1| DNA helicase II [Burkholderia mallei GB8 horse 4]
 gi|121601559|ref|YP_992792.1| DNA helicase II [Burkholderia mallei SAVP1]
 gi|124385882|ref|YP_001026420.1| DNA helicase II [Burkholderia mallei NCTC 10229]
 gi|126449241|ref|YP_001080308.1| DNA helicase II [Burkholderia mallei NCTC 10247]
 gi|167001551|ref|ZP_02267346.1| DNA helicase II [Burkholderia mallei PRL-20]
 gi|254178093|ref|ZP_04884748.1| DNA helicase II [Burkholderia mallei ATCC 10399]
 gi|254199592|ref|ZP_04905958.1| DNA helicase II [Burkholderia mallei FMH]
 gi|254205910|ref|ZP_04912262.1| DNA helicase II [Burkholderia mallei JHU]
 gi|254358690|ref|ZP_04974963.1| DNA helicase II [Burkholderia mallei 2002721280]
 gi|52428866|gb|AAU49459.1| DNA helicase II [Burkholderia mallei ATCC 23344]
 gi|121230369|gb|ABM52887.1| DNA helicase II [Burkholderia mallei SAVP1]
 gi|124293902|gb|ABN03171.1| DNA helicase II [Burkholderia mallei NCTC 10229]
 gi|126242111|gb|ABO05204.1| DNA helicase II [Burkholderia mallei NCTC 10247]
 gi|147749188|gb|EDK56262.1| DNA helicase II [Burkholderia mallei FMH]
 gi|147753353|gb|EDK60418.1| DNA helicase II [Burkholderia mallei JHU]
 gi|148027817|gb|EDK85838.1| DNA helicase II [Burkholderia mallei 2002721280]
 gi|160699132|gb|EDP89102.1| DNA helicase II [Burkholderia mallei ATCC 10399]
 gi|238523865|gb|EEP87301.1| DNA helicase II [Burkholderia mallei GB8 horse 4]
 gi|243062656|gb|EES44842.1| DNA helicase II [Burkholderia mallei PRL-20]
          Length = 787

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 112/736 (15%), Positives = 220/736 (29%), Gaps = 161/736 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
             A    S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVAGKAGSSLASFANLIAKMRAETAQMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------ALESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++           A          
Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDWFARP 705

Query: 722 TPLEREETIKQLMDEQ 737
               R+  +   +   
Sbjct: 706 GGGARQGVVDAAVSAP 721


>gi|254779988|ref|YP_003058095.1| DNA helicase II (UvrD) [Helicobacter pylori B38]
 gi|254001901|emb|CAX30154.1| DNA helicase II (UvrD) [Helicobacter pylori B38]
          Length = 681

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 95/563 (16%), Positives = 184/563 (32%), Gaps = 118/563 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    +  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLCLSLKILQDNE---KLAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKQLS----------CTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHIKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGALSFYERAEVKDALAFMHVVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K         +  + 
Sbjct: 388 RFFIKRVLNKPPRGLGKITQEWIFSLLDDEDLNLEEALKLGAFKDKLNPKNEYALKKFMA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F T  L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVEKFCTQFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +    +    + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDVHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA ++L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEELQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDS 688
                S   +    +    + ++
Sbjct: 588 YVKERSYFGRKISCSPSVFLEEA 610


>gi|54295644|ref|YP_128059.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Lens]
 gi|53755476|emb|CAH16972.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Lens]
          Length = 665

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 106/684 (15%), Positives = 224/684 (32%), Gaps = 140/684 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + NE    +     P    +   +  + +L +       + +   L+        E+   
Sbjct: 58  AANEMRARVSA-FLPAASRRGLKVATFHTLGLSI-IKRDVSRCD-LKPGFSIFDSEDCLQ 114

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-- 125
           +L  F            + +  +      ++ + K Q +    ++     ++        
Sbjct: 115 ILRGFL----------PVNKATD------RDFILKVQQQISLWKNNLLNPELILQNPPET 158

Query: 126 -SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                A  +   Y+EA K    +DF+DLI    DLL +    A +      +I H+L+DE
Sbjct: 159 LLCDEALTIYPRYQEALKAYNAVDFDDLIRLPVDLLNEH---ADVLEYWQNKIRHLLVDE 215

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD++  Q+ +++ L                   VGD+ QSIY++ GA+P+ + + ++  
Sbjct: 216 YQDSNTSQYLLVKKLAG----------VRAHFTVVGDDDQSIYAWRGAKPENLAQLQKDF 265

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +          II+L  ++RST+ IL   +++ +  ++       S             
Sbjct: 266 PR--------LKIIKLEQNYRSTSRILHAANQLIAHNQHLFEKKLWSDL----------- 306

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            G  +L   V  + +                          A  +   I+++I       
Sbjct: 307 -GHGELLRVVSCKDEQD-----------------------EAEHV---IADLISHKLRNR 339

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                     D  +L R      +   + R     + I    +        L ++D+ A 
Sbjct: 340 TK------YSDYAILYRGNHQARIFEKVLR----HHGIPYHISGGQSWFAKLEVRDIFAY 389

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF------ANCG 477
            + + ++ DD +F+  + +P     E  +  +    +    ++Y            A+  
Sbjct: 390 LKLLCNEADDAAFLRAITTPKRGIGESSLDALGRYAQSRGISLYHGSDHLGLSEFVADKQ 449

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-----IDVLDEF 532
              F     ++ ++       S  +    ++           +  +       +D + E 
Sbjct: 450 RMIFHDFKLWMEDIKKRISSDSVLEHLRQMVEDIGYEAYIYEQCDSPAKAQKKMDNVWEL 509

Query: 533 LNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           L +  R        SL +++++L       +    ++ + V++MT+H +KGLE P V+LV
Sbjct: 510 LEWVNRLLNKEPEQSLMDVVNKLILIDILEQSD-ESSSDVVQLMTLHASKGLEFPFVYLV 568

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      +     EE  RL 
Sbjct: 569 GMEEELLPH-----------------------------------RVSIDDDQIEEERRLA 593

Query: 652 YVGMTRASDQLIICKHSNTSNEKK 675
           YVG+TRA   L            +
Sbjct: 594 YVGITRAQKGLCFTLAKQRRRAGE 617


>gi|261840154|gb|ACX99919.1| DNA helicase II [Helicobacter pylori 52]
          Length = 681

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/572 (16%), Positives = 185/572 (32%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 ELLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A       ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLAAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K         +  I 
Sbjct: 388 RFFIKRVLNKPSRGLGKITQELIFSLLDGENLNLEEALKLGVFKGKLNPKNEYALKQFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F T  L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVEEFCTRFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA ++L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEELQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVQERSYFGRKISCSPSVFLEEAELLKQDNPP 619


>gi|148827827|ref|YP_001292580.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG]
 gi|148719069|gb|ABR00197.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG]
          Length = 670

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 117/644 (18%), Positives = 225/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RSYNALDFDDLIMLPTLLFKQNEE---VRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 E----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    ++       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNDHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGEGEKLLIIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  +++E I +FA             Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFEAIFEFALIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L A    +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSAIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|308062742|gb|ADO04630.1| DNA helicase II [Helicobacter pylori Cuz20]
          Length = 681

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/572 (16%), Positives = 183/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIK 486
                 +L  P     +     I +    E   + E ++      K            I 
Sbjct: 388 RFFIRRVLNKPSRGLGKITQEWIFSLLDDEGLNLEEALKLGVFKGKLNPKNEHALNKFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F    L      + +       E    + E L     + + + +
Sbjct: 448 MIGRLRE-AFEISVEEFCARFLEETNLLKSYEKEDNYEEREGFVKELLALVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVQERSYFGRKISCSPSVFLEEAKLLKQDNPP 619


>gi|242240423|ref|YP_002988604.1| exonuclease V subunit beta [Dickeya dadantii Ech703]
 gi|242132480|gb|ACS86782.1| exodeoxyribonuclease V, beta subunit [Dickeya dadantii Ech703]
          Length = 1189

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 122/876 (13%), Positives = 270/876 (30%), Gaps = 127/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    LA       +     E K++   L F+DL+   ++ L++ 
Sbjct: 308  QHAIFLAVDDLLQSSLTLRDLAISLALSEVRLSIREEKQRRAELGFDDLLSRLDEALQQ- 366

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +   I +     +IDE QDT   Q+ +  ++                   +GD K
Sbjct: 367  DAGQALAQAIRERYPLAMIDEFQDTDAQQYRIFSTIY--------ADQPQCGWLMIGDPK 418

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    +R +       T          L  ++RST  ++  V+++F   + 
Sbjct: 419  QAIYAFRGADIFTYMRAREDVPSHYT----------LDTNWRSTPGMVEAVNRLFQCADT 468

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+     +                  +  ++     P    W +  + +       
Sbjct: 469  PFVFSQIPFLPVN----------AADNNRSLTFEYQGSRMPAMRFWLTGREGVGVGDYQQ 518

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +AR+ A +I + +               +R + A DI VLVR R +      L R    
Sbjct: 519  AMARQCADSICSWLSAGQRGEAWLTRGEMRRPVVASDITVLVRSRYEAA----LIRQALG 574

Query: 399  DYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               I  V  ++R  +       +L+ L + +L+ E +      + + L       + ++C
Sbjct: 575  RLNIPSVYLSNRDSVFAASEATELLWLLQAVLAPEQERLLRGAMATSLMGMDAAALDELC 634

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                + + + +    + +      + V+  +  L+        H     +L + +G ++ 
Sbjct: 635  RNESQWDALVDEFAGYRHIWGQ--RGVLPMLRRLMQQ------HRLAENLLASPEGERRL 686

Query: 518  ISRFGNEVIDVLDEFL---NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
                       + E L   +  L +E      L + I++      + +    ++ + V+I
Sbjct: 687  TDVL------HIGELLQEASAALDSEHALVRWLAQQIAQPNSQSESQQLRLESDRHLVQI 740

Query: 575  MTVHTAKGLESPVVFLVD-TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            +T+H +KGLE  +V+L      +            +    D  G                
Sbjct: 741  VTIHKSKGLEYALVWLPFICNFRAQPQGIYHDRQTLLPTLDLNGG--------------E 786

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQ-------LIICKHSNTSNEKKSNQRTWYDMVY 686
            +     ++    E  RLLYV +TR+          L +       N    +    Y +  
Sbjct: 787  ESRTLAEEERLAEDLRLLYVALTRSIYHCAVGVAPLYLRSQKKEGNSDMHSSALGYLLQR 846

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-- 744
             +    + +       + +  +          P    LE    ++   +++++  +    
Sbjct: 847  GAAAPADVLVAALEAMAGDDIDIADVVAEDGEPWRPALETAPLLQVRQNKRQLHDRWRVT 906

Query: 745  ---------SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                     +    ++     L     + +      +  +  +    G  +H L + +  
Sbjct: 907  SYSGLQQHGASAIQELFPRLDLETKGEEAQAPDEAFTPHTFPRGAAPGTFLHSLFEQLEF 966

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR---LLENPMMTTAMSCDSYSEVSVS 852
                     +     +          K  L ++       E+  ++   S    SE+   
Sbjct: 967  TAAIDEPWLLEQLRQQGMAEEWQPVVKAWLATVLDTPLTPEHIRLSALESRFRQSELQFY 1026

Query: 853  GKINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKTH 886
              I                                 ++ G ID +   Q   ++ +YK++
Sbjct: 1027 LPIASMLDAGKLDRLAKTHDPLSADCPALDFQQVKGMLKGFIDLVFFWQGRYYLLDYKSN 1086

Query: 887  HHVPQEIEHIP---------YTHIAQLSIYEKILKD 913
               P    +           + +  Q  +Y   L  
Sbjct: 1087 WLGPDAGAYTQPAMHRAMAEHRYDLQYQLYSLALHR 1122


>gi|93005402|ref|YP_579839.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
 gi|92393080|gb|ABE74355.1| ATP-dependent DNA helicase Rep [Psychrobacter cryohalolentis K5]
          Length = 677

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 112/651 (17%), Positives = 215/651 (33%), Gaps = 126/651 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      + +   +++ I+      T    +       +   L A YE  
Sbjct: 124 RDNLSGAESRELVGKAIKMISDWKNDLIEPDKAMETLDDPEDM-----IFATLYALYERN 178

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    +L++      +R K    I ++L+DE QDT+  Q+E+I+ L 
Sbjct: 179 LRAYNAVDFDDLIVLPTKILREN---RELRDKWQNRIRYLLVDEYQDTNTAQYEMIKYLV 235

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                             VGD+ QSIY++ GA+P+ +   K    K          I+ L
Sbjct: 236 G----------PQGRFTVVGDDDQSIYAWRGAKPENMGLLKEDFPK--------LKIVML 277

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  ILT  + V +  E+       S              G  +    +  ++D 
Sbjct: 278 EQNYRSTTRILTSANAVITNNEHLFEKKLWSDK------------GQGEKIRIINCRNDD 325

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
             +                        R+A  I          ++  +   + +   VL 
Sbjct: 326 DES-----------------------ERVAKEI---------VTHKLRFGNEWEQYAVLY 353

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R L+    +    +          IKD+M+  R IL+ EDD +F+ +
Sbjct: 354 RSNFQARMLEAQLRQLQ----VPYKLSGGQSFFARSEIKDVMSYLRLILNPEDDSAFLRV 409

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVIKYIHEL-I 492
           + +P        + K+    +  + ++                  S  +    +I     
Sbjct: 410 INTPKRGMGPATLEKLGLFSQEHSISLLASCTHAGLAHVLPSKSYSTLKEFGDFIEHYTR 469

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFL----NFTLRNEQNS 543
            + Q   P      ++          S           ID +D       +   R E++ 
Sbjct: 470 ELDQHPDPVPIVRQMIDETGYIDFVRSDSKTPQQEKNRIDNIDMLYTSIQSLINRAEEDE 529

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             ++  +I +L       ++    N N+V +MT+H AKGLE   V+++    ++  H   
Sbjct: 530 DRTIDTIIRKLVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDFVYIMGLEEEMLPH--- 586

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA  +L 
Sbjct: 587 --------------------------------RNSILSETVEEERRLMYVGITRARRELT 614

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +   +      +    +    + +   +              KD     + 
Sbjct: 615 LTLATQRRAGGQMRVTSESRFLDELPEDHIDWPAKAKKQKATKDPAAVADE 665


>gi|215426220|ref|ZP_03424139.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
 gi|289749473|ref|ZP_06508851.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
 gi|289690060|gb|EFD57489.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T92]
          Length = 632

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 98/624 (15%), Positives = 177/624 (28%), Gaps = 102/624 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +      +              +            + L         ++   
Sbjct: 79  AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + +          +    
Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L        N    P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +     +                      
Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D+ V  R    +  +  +         I           +   I+D++A  R 
Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLRV 423

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGI 478
           + +  D +S   +L +P     +     +     +      + +   A            
Sbjct: 424 LDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAE 483

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
                 ++   EL          +    +L     R++  +    +    +D L+E ++ 
Sbjct: 484 KAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSV 542

Query: 536 TLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAK 581
                           +         L   LE+            H    V +MT+HTAK
Sbjct: 543 AHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAK 602

Query: 582 GLESPVVFLVDTGSQVFSHKHIKK 605
           GLE PVVF+      +F H     
Sbjct: 603 GLEFPVVFVTGWEDGMFPHMRALD 626


>gi|227115358|ref|ZP_03829014.1| exonuclease V subunit beta [Pectobacterium carotovorum subsp.
            brasiliensis PBR1692]
          Length = 1193

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 128/870 (14%), Positives = 276/870 (31%), Gaps = 122/870 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 +R     +    L  +     +     E K++   L F+DL+   +  L++    
Sbjct: 317  LFDETERLLEAPLSLRDLVIVRALSAIRESVSEEKRQRAELGFDDLLSRLDVALQESG-G 375

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I +     +IDE QDT   Q+ + R L            S   L  +GD KQ+I
Sbjct: 376  EQLASAIRERYPVAMIDEFQDTDPQQYRIFRMLY--------VGQSQCGLLLIGDPKQAI 427

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    +  +          G+  +   L  ++RS+  ++  V+++F   ++   
Sbjct: 428  YAFRGADIFTYMHAR----------GEVAAHYTLGTNWRSSHQMVHGVNRLFERLDSPFI 477

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                    ++   S+ G          +V +   Q  P  + W +  + +        +A
Sbjct: 478  FQNIPFLPVKPAESKRG----------LVFEVAGQPQPALQFWLTGSEPIGVGDYQQQMA 527

Query: 347  RRIAYTISNMIGTDTIFS-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            R+ A  I + +            +  +R+++A D+ VLVR R++  LI      L     
Sbjct: 528  RQCAAQIRDWLAASQRNEAWLVTDDSRRLVRASDMSVLVRSRREASLIRDALSRLSIP-- 585

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +       D++ L + +L+ E + +    + + L     + +  +     
Sbjct: 586  -SVYLSNRDSVFSTPEASDMLWLLQAVLAPEQERTLRSAMATALMGLDAEQVDALGQS-- 642

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                  E          + ++ + +    L  +    S H     +L + +G ++     
Sbjct: 643  ------EAAWDALVDEFAGYRALWRQRGVLPMLRALMSRHQLAENLLASAEGERRITDIL 696

Query: 522  GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                   + E L      L +E      L + I +        +    ++ + V+I+T+H
Sbjct: 697  ------HIGELLQDASATLDSEHALVRWLSQQIVQPNPQAENQQLRLESDRHLVQIVTIH 750

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V+L    +     + I           D                  +    
Sbjct: 751  KSKGLEYPLVWLPFISNFRVQDQGIYHDRESYQAVLDLQNN-------------EESQTL 797

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             ++    E  RLLYV +TR+     +       S +K  +       +       +  + 
Sbjct: 798  AEEERLAEDLRLLYVALTRSIYHCSVGVAPVQRSRKKDGSSDMHQSALGYLLQRGKEAEA 857

Query: 698  IKLTNSINKD-----------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL--- 743
              L + +                    W    PE   L      +QL D  ++       
Sbjct: 858  ATLVSELEGMVGDGVALTPLQAMEEQRWQPDRPELAELRARHIERQLRDGWRVTSYSGLQ 917

Query: 744  --FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
               S    D+     +       +      +  +  +  + G  +H L + +      + 
Sbjct: 918  QHGSASAQDLVPRLDIEAIGERQEADETQLTPHTFPRGASPGTFLHSLFETLDFTQPVED 977

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCP 858
                     +  +       K  + ++     N     ++   + D  +E+     I  P
Sbjct: 978  DWLAEQLQLQGFEAHWHPVLKAWMDTLLHTPLNEQGIALSALENADKQAELQFYIPIGAP 1037

Query: 859  KK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
             +                            ++ G ID +   +   ++ +YK++   P  
Sbjct: 1038 IQAAQLDRLAKHHDPLSARCPALSFQQVKGMLKGFIDLVFRWEGRYYLLDYKSNWLGPDA 1097

Query: 893  IEHIP---------YTHIAQLSIYEKILKD 913
              +           + +  Q  +Y   L  
Sbjct: 1098 SAYTQTAMMQSMAEHRYDLQYQLYTLALHR 1127


>gi|261345272|ref|ZP_05972916.1| ATP-dependent DNA helicase Rep [Providencia rustigianii DSM 4541]
 gi|282566971|gb|EFB72506.1| ATP-dependent DNA helicase Rep [Providencia rustigianii DSM 4541]
          Length = 675

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 105/640 (16%), Positives = 218/640 (34%), Gaps = 122/640 (19%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             +T ++ ++  DL ++L  +   +               T      A+     YE   K
Sbjct: 118 KELTFDLLEEDKDLLKQLISTISNWKNDLISPQQVIGQARTEKEHHFAE-CYRRYELHLK 176

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              VLDF+DLI     LL + +    +R +  Q+I ++L+DE QDT+  Q+++++ L  +
Sbjct: 177 SCNVLDFDDLISKPTLLLSQNEE---VRERWQQKIRYLLVDEYQDTNTSQYQLVKLLVGN 233

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                           VGD+ QSIYS+ GA P+ ++   +   K         ++I+L  
Sbjct: 234 ----------RARFTVVGDDDQSIYSWRGARPQNLILLNQDFPK--------LNVIKLEQ 275

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS+  IL   + + +   +       S                               
Sbjct: 276 NYRSSERILKAANILIANNPHVFEKKLFS------------------------------- 304

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
              +  + +    L   +     A R+   I  +I    I         Q KD  +L R 
Sbjct: 305 ---ELGYGAPLKVLTANN-EDHEAERV---IGELIAHHFI------NKTQYKDYAILYRG 351

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + +   +        +I    +          IKDL+A  R + + EDD +F+ ++ 
Sbjct: 352 NHQSRIFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPEDDSAFLRIVN 407

Query: 443 SPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHVIKYIHELIHIA 495
           +P        I K+        +++Y+               +   Q   +++ +++ ++
Sbjct: 408 TPRREIGPKTIQKLGEWANQRGKSLYQASFDLGLEQTLTGKGLEALQRFTRWMDDIVRVS 467

Query: 496 QFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN----EQNSYSS 546
           +          +L                +     +  +++   +        E N   +
Sbjct: 468 EREPLIA-VRDLLREMDYESWLYETSPSTKAAEMRMKNVNQLFTWMSEMIEGDELNEPMT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +     + ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LNQVVTRFTLRDMMERGEDDEDSDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             ++  +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------ENNIDEERRLAYVGITRAQRELFFSH 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                   +  +      + +   +D   ++ +   S  +
Sbjct: 612 SRERRQYGELIRPELSRFLLELPQDDIEWEQQRKVVSAEE 651


>gi|91776104|ref|YP_545860.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus
            flagellatus KT]
 gi|91710091|gb|ABE50019.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus
            flagellatus KT]
          Length = 1129

 Score =  268 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 145/976 (14%), Positives = 309/976 (31%), Gaps = 126/976 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT---ILKKAQTLQQASQTQCIEERFSLL--- 69
            + +DL          + + +              +++A  L   +      +   +    
Sbjct: 225  VIQDLKAAAEVLPERMQRVLMPVARYAAGNLACDVRQALLLDWETPLPASSQALPVWLAV 284

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS--- 126
                LT   T +K +  +     +P+ K   ++  +    ++         +   +    
Sbjct: 285  CDLLLTGTGTLRKTVNVKNGFPATPESKPFKERFAEIVATLQQTAGAEATLQRLRSLPVR 344

Query: 127  ------------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKI 173
                          L K   A      ++   +DF ++       L    D  + +  K+
Sbjct: 345  QDEHSWQMVAALAQLLKLAVAQLWLVFQQAGEVDFVEVSQRALLALGDDDDAPSELAMKL 404

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            D EI+H+L+DE QDTS  Q ++++ LT+ +  G       RTLFAVGD  QSIY F  A 
Sbjct: 405  DYEISHLLVDEFQDTSPGQVKLLQRLTQGWMPGDG-----RTLFAVGDPMQSIYRFRKAN 459

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDST 292
                L               K   ++L  + RS   ++  ++  F         + + + 
Sbjct: 460  VGLFLEVAED-----GIGALKLERLQLCRNNRSAPPVVDWINATFRHVFPAHDSVVQGAI 514

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                  ++R  + G   +   +++  D   +  +                   A  +   
Sbjct: 515  RYREFVATRENEAGADVMVHPLIAHPDEGADALRI----------------REAGTVVGI 558

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            I                      I VLVR R     +    R    D        +   L
Sbjct: 559  IR-----------HTWASRPEARIAVLVRARAHLETLVAEIRRHHPDLH--FQAVEIEPL 605

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                +++DL+AL   +L + D ++++ +L++P       D+  +   R    T++  +  
Sbjct: 606  AGRQSVQDLLALTHALLQRADRVNWLAVLRAPWCGLRLADLHVL-AGRDRYRTIWSLLHD 664

Query: 473  ------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
                   +  G  + QHV++ + E++          +         G Q           
Sbjct: 665  NALLAGMSEDGRRRSQHVVQVLSEILGQQGRMPLSRWLESAWLMLGGAQCLWQPGDV--- 721

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
              ++ F     + +Q    SL+ L+ E+E+            + +++ MT+H +KGLE  
Sbjct: 722  ADVEAFFALVDQLDQQGRFSLERLVQEVEKL---YAAPDLEANGQLQFMTIHKSKGLEFD 778

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG---------IPIWIPQSKSRNNIVSDLIK 637
             V L     +  + +    +    +++ + G                 +   +  S L  
Sbjct: 779  TVILPGLERRPRNGEMPLLLWEEVAIDTEAGVTTELVTAPFIPKGAAGRDEPSPYSYLKM 838

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              K+    E  R+LYV  TRA   L +      + + +        +             
Sbjct: 839  LEKERADHESARVLYVAATRAERCLHLLGSVVPNAKGELRPSGGTFL------------- 885

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
                       W              +   E   Q         KL    + D+   Y  
Sbjct: 886  --------DLLWPHLAGRFMEAAAQHVLPAEDASQPPLLADFVPKLVRVEEADMPSIYND 937

Query: 758  NPSTIDTKGKTNLESLLSDNQT---FNRGLIIHKLLQVIFTLPE--------HKRKNFIT 806
            +   + +  +   ++ +   Q     + G + HK +++I   P+           +  + 
Sbjct: 938  DRHEVVSYEQAPADTPVLGRQAGLEAHIGTLAHKYVEMISADPDFDGWLARLPSLRPAMV 997

Query: 807  SYCTKNAKLWPAKEYK--NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
             +  +      A +     +L  +   L++P     +S    +  +    +         
Sbjct: 998  RWLARQGHHQDAAQEAAGQVLQLLALTLQSPDGRWVLSARPQA--AAELALGHVGDAGFK 1055

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHI----PYTHIAQLSIYEKILKDSYPNKSL 920
               +D+  I     +I +YK+          I       H AQL+ Y  +  +    + +
Sbjct: 1056 QHVVDRCFIENGERWIIDYKSTRLPVNADAQIMLDAASVHAAQLTGYAALFAE--EGRPI 1113

Query: 921  VCLLIYVSEPKVFIIP 936
               + +++  K+  +P
Sbjct: 1114 RKAIYFMALGKLCELP 1129


>gi|260581374|ref|ZP_05849189.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae RdAW]
 gi|260091969|gb|EEW75917.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae RdAW]
          Length = 676

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 118/644 (18%), Positives = 224/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 124 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 181

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 182 RTYNALDFDDLIMLPTLLFKQNEE---VRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 238

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 239 D----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 280

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 281 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 310

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 311 TIGKGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 356

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 357 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 412

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  +++E I +F              Q   ++I EL   
Sbjct: 413 NTPKREIGTATLQKLGELAQEKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 472

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L A    +       +          +    ++        E N   
Sbjct: 473 IQRSEPERAVRSMLSAIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 532

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 533 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 592

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 593 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 618 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 661


>gi|257452062|ref|ZP_05617361.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R]
 gi|257466139|ref|ZP_05630450.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917297|ref|ZP_07913537.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317058610|ref|ZP_07923095.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R]
 gi|313684286|gb|EFS21121.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R]
 gi|313691172|gb|EFS28007.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 717

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 105/577 (18%), Positives = 198/577 (34%), Gaps = 119/577 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           KK      K+++   +   ++             +   Y    K    +DF D+++NT +
Sbjct: 137 KKLASLISKLKEEGVSADDYEKDAYEYEAKTIAEIYRRYNIKLKNQNGIDFSDILLNTKN 196

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL+  +    I  KI  +  +I++DE QDT+ IQ++++  + +            R +  
Sbjct: 197 LLEIPE----ILEKIQTKYQYIMVDEYQDTNNIQYQIVNKIAQ----------KHRNICV 242

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGDE QSIY F GA  + +L  ++          +   +++L  ++RSTA IL   + V 
Sbjct: 243 VGDENQSIYGFRGANIQNILNFEKDY--------KDAMVVKLEQNYRSTAIILDAANAVI 294

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
               +++  +                     LW         +    +       +   +
Sbjct: 295 RHNTSSKNKN---------------------LW-------TDKKEGDKIKVFKALNQRDE 326

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                    ++   I+                   +D+ +L R    + +          
Sbjct: 327 -------VEKVISEIAKEKQKGRA----------YRDMTILYRTNAQSRVFEEAF----L 365

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-C 457
            Y+I               IKD++A    I +  D+ + + ++  P     +  I KI  
Sbjct: 366 RYRIPYKIFGGMQFYQRAEIKDILAYLSLINNPLDETNLLRIINVPKRKIGDKSIEKIRF 425

Query: 458 TQRHETETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
             R +  T+ + + +               Q     I EL+ +A + +    F+ +L   
Sbjct: 426 FAREQGLTLLDSLARAGEISGIGSGLAVTIQQFYTLIRELMDLAPYENTSIIFSSLLEKI 485

Query: 512 KGRQQF--ISRFGNEVIDVLDEF-LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
             +Q            I  ++E   +           SL++ +  +     T       N
Sbjct: 486 GYKQYLETAYEDAEVRISNIEELGASILELENLLGNLSLRDYLENVSLVSATD--DLQEN 543

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V++MT+H AKGLE PVVFLV   ++ F                              
Sbjct: 544 QDYVKLMTIHNAKGLEFPVVFLVGVENETFPGNSKFSS---------------------- 581

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                       +   EE  RL YV +TRA ++L+I 
Sbjct: 582 ------------EDDLEEERRLCYVAITRAEERLVIS 606


>gi|254497523|ref|ZP_05110315.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            drancourtii LLAP12]
 gi|254353240|gb|EET11983.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            drancourtii LLAP12]
          Length = 1084

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 166/914 (18%), Positives = 313/914 (34%), Gaps = 141/914 (15%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT--------------QEINKKSPDLKEK 99
               +  +  ++  + LS   LT     +K+                 + +   S +L  +
Sbjct: 262  DWYNFQETNQDLVAALSKLLLTGDANFRKSFDHHVGLLSSSCPPNEYKRLKNASKELLSE 321

Query: 100  LKKSQDEFIKIRDRFNTYK------MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
            L +  D    +    N  K       ++   A   L   L  H      ++  +DF  + 
Sbjct: 322  LNEYPDFLDALLQVCNLPKPEYDPEQWEVLQALFLLLPLLVGHLHLIFSEHNEIDFTAIS 381

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
                  L + D    +   +D  I+H+L+DE QDTS+ Q+E++  L   +  G       
Sbjct: 382  QQALAALGESDCPTDLALYLDNSIHHLLVDEFQDTSITQFELLNKLVHGWQDGDG----- 436

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
            +TLF VGD  QSIY F  AE     R K              + +EL  +FRST  I+  
Sbjct: 437  KTLFIVGDPMQSIYRFRQAEVGLFFRAKEQ-----GIGPVHLNSLELSCNFRSTKTIVDW 491

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            V++ FS     Q                  + G V     V    D + +          
Sbjct: 492  VNQQFSQIFPQQVDI---------------ESGAVSFHSSVNVIQDDEHSA-----IHAV 531

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                +E  A  L + I Y +                      + +LVR R     I  L 
Sbjct: 532  QFKGKEQEAQSLIQVIHYELQTHPEQ---------------SMAILVRSRSQLVEIIRLL 576

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R     ++I   G D  +L + + ++D+ +L + +LS  + LS++ +L+SP       D+
Sbjct: 577  R----QHQIPYQGTDITLLANLVHLRDVWSLTQALLSPANRLSWLSLLRSPYCGLPLADL 632

Query: 454  FKICTQRHETETVYEY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
              I     +            IQ  +  G  + +  I+ + + +          +    L
Sbjct: 633  HIIAQFNKKKSIYSALLQLNKIQGLSEEGRIRAKFFIRIMQQALMHRYESKLSAWVIATL 692

Query: 509  GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                  +          ++ L++F +   R EQ+    L ++   L+++      +  A+
Sbjct: 693  KKLHADKIL----NQTQLNDLEQFWSLLDRYEQDGR--LADMKEFLKEF--KKLYSQQAS 744

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QS 625
             + +++MT+H +KGLE   VFL   G+Q           +         + +  P     
Sbjct: 745  PSRLQVMTIHKSKGLEFDAVFLPGLGAQPNRGDSPMLRWLNLPTQKQGNLLLMSPIQAAH 804

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                 +   L +     +  E  RLLYV +TRA  +L +       + +KS++R++  ++
Sbjct: 805  HEHCAVYDYLEQLDSVKSSYETQRLLYVAVTRAKSRLYLM-----DHSEKSSKRSFRSLL 859

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             +   + +   ++    ++   + +      +  E                         
Sbjct: 860  KNQEFSADETVQLTEEINLPLPKVMQLPLHYYQSEEG----------------------- 896

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
                           T++     N  S LS +     G+I H+LLQ I            
Sbjct: 897  ---------------TLNEPFARNAPSTLSSSIPRLIGIITHQLLQWICDNHPSTLAEVP 941

Query: 806  TSYCTKNAKLWP------AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
             +      K         A+  K L   ITRL  +      ++     E     ++   +
Sbjct: 942  WNLAHYEFKKLGFNEQMQAEALKTLQEQITRLFADTTGAWIIAKHDK-EQ-NEYELLVAQ 999

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
            +    +  ID++  +   ++I ++KT      E +     H  QL+ Y   L +      
Sbjct: 1000 QGKPTTRIIDRMFETPNKLWIIDFKTGR----EDKKAQVKHRLQLNDYALYLSER-TELP 1054

Query: 920  LVCLLIYVSEPKVF 933
            + C + Y+S     
Sbjct: 1055 IHCGIYYLSSNHWV 1068


>gi|260773436|ref|ZP_05882352.1| exodeoxyribonuclease V beta chain [Vibrio metschnikovii CIP 69.14]
 gi|260612575|gb|EEX37778.1| exodeoxyribonuclease V beta chain [Vibrio metschnikovii CIP 69.14]
          Length = 1204

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 134/891 (15%), Positives = 266/891 (29%), Gaps = 134/891 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q     I ++F    +  +         +      EAK +   L F+DL+   +  +   
Sbjct: 307  QHALFTIIEQFLQTPISLAAPLLAHAILHCRERLAEAKAQKQWLSFDDLLTQLSAAI-DH 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   +            +   L  +GD K
Sbjct: 366  DQLGLLTERIRTLYPVAMIDEFQDTDPLQYSIFSRIY--------LPKAECGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY F GA+    ++ ++      T          L  ++RS+A +++ V+++FS   +
Sbjct: 418  QAIYGFRGADIFTYIKVRQQVSAHYT----------LGTNWRSSAQMVSAVNQLFS--SS 465

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSA 342
            A     D        ++         L        + Q  P    W    D  LP+    
Sbjct: 466  ASPFMYDQDIPFLPVAASPNADKRQWLL-------NGQSQPALTYWLQEADKPLPKNEYL 518

Query: 343  SILARRIAYTISNMIG-----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            S +A+  A  I  ++           +   ++++QA DI VLVR   +  +I    + L 
Sbjct: 519  SCMAKACASHIQTILSAAQHHQAYFETGKGQKIVQAGDIAVLVRTGNEGRMIK---QALA 575

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                 SV  ++R  +      +DL  L + +L+ +DD +    L SP F F    +  + 
Sbjct: 576  EQGIASVYLSNRDSVFSSDVAQDLQRLLQAVLTPDDDRTLRACLASPFFAFDAASLDALN 635

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                      E + + A      ++ +      L  +    S        L  + G +  
Sbjct: 636  ND--------EVVWENAVNEFKAYRQLWIERGVLPMLRSVMSKRHLAERWLEEQNGDRLL 687

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP------PTIKRAHSANHNE 571
                       + E L    +  ++ +  L+ L   +              +   +  N 
Sbjct: 688  TDFM------HIGELLQQARQEIESDHGLLRWLAQSISDAEQGIGGRDEQIQRLESEQNL 741

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            V+I+T+H +KGLE  +VFL                      ++         Q+      
Sbjct: 742  VQIVTIHKSKGLEYDLVFLPFVAG-------------YREASEGKYYDSVNDQTVLDITD 788

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFH 690
             S  ++   K    E  RL+YV +TRA     I           K         +     
Sbjct: 789  SSAALEQADKERLAEDLRLIYVALTRAVYGCFIGLAPLRNGRSTKEPTGVHLSAIGYLLQ 848

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHP------ENTPLEREETIKQLMDEQKIPKKLF 744
            N +     +L +++N     A   +   P           E+     Q +          
Sbjct: 849  NGQETGIAELHSALNAQVRDAIVVTAPPPLQNEPFTALVAEKPILKAQTLHTHIDRHWRL 908

Query: 745  SPIKNDINEPYILNPSTID----------------TKGKTNLESLLSDNQTFNRGLIIHK 788
            +     +     L                              S+ +  +    G  +H 
Sbjct: 909  TSYSALVKHSSKLAYDEASLEISGFDIDSGDEQNQALLLEPERSIFTFPRGATPGTFLHS 968

Query: 789  LLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTTAM 841
            L + +                     +    +    L   +  +L  P       +    
Sbjct: 969  LFEEVEFTESASSDENQQRIIELMEREHIELEWLPVLQQLVDTVLATPLDGKALRLNQKT 1028

Query: 842  SCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISISQQ 876
            +     E+     +       +                         + G ID +   Q 
Sbjct: 1029 AQQRLVEMEFLLPVEVLSAPALNRIIQRYDPLSAKAGELGFYPVQGMLKGFIDLVFEHQG 1088

Query: 877  NIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPNK 918
              ++ ++K++H   +             + + +  Q  +Y   L     ++
Sbjct: 1089 KYYLLDWKSNHLGDEIGAYHGERLRAAMVEHRYDLQYQLYALALHRFLRSR 1139


>gi|254496066|ref|ZP_05108967.1| ATP-dependent DNA helicase Rep [Legionella drancourtii LLAP12]
 gi|254354708|gb|EET13342.1| ATP-dependent DNA helicase Rep [Legionella drancourtii LLAP12]
          Length = 686

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 107/704 (15%), Positives = 220/704 (31%), Gaps = 140/704 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + NE    +   + P    +   I  + +L +       L   + L++       E+   
Sbjct: 77  AANEMRARV-AAVLPAANRRGLKIATFHTLGLSM-IKRDLALCE-LKKGFSIFDSEDCVQ 133

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST---L 124
           +L  F    K T +                + L + Q    + ++   T +         
Sbjct: 134 ILRGFLPANKATER----------------DFLLQIQQRISRWKNDLLTPEQVFRNPPDA 177

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                A  L   Y++A K    +DF+DLI     LL++      +      +I H+L+DE
Sbjct: 178 PLYEEAALLYPRYQQALKAYNAVDFDDLIRLPVTLLQEHPA---VLEYWQNKIRHLLVDE 234

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD++  Q+  ++ LT                  VGD+ QSIY++ GA+P+ + + +   
Sbjct: 235 YQDSNTSQYLFVKLLTG----------VRAHFTVVGDDDQSIYAWRGAKPENLNQLQADY 284

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                       II+L  ++RST  IL   + + +  ++       S             
Sbjct: 285 PH--------LKIIKLEQNYRSTNIILHAANHLIANNQHLFDKKLWSEL----------- 325

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            G   L   +  + +                          A ++            + S
Sbjct: 326 -GQGDLLRVLRCKDEQD-----------------------EAEQVVT---------DMIS 352

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
           +  +   +  D  +L R    + +   + R     Y I    +          +KD  A 
Sbjct: 353 HKMRTRTEYGDYAILYRGNHQSRIFEKVLR----HYGIPYKISGSQSWFAKAEVKDAFAY 408

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYIQKFANCG 477
            + + ++ DD +F+ ++ +P     E  +  +    +    ++Y            A+  
Sbjct: 409 LKLLCNETDDAAFLRVINTPKRGIGESSLDALGHYAQGRGISLYAGADHLALTDAIADKP 468

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEF 532
                    +I  +       S  +    ++           +        + +D + E 
Sbjct: 469 RKALLQFKYWIEVIKKRIATGSIVEHLKQMIEDSGYEAHIYEQCDTPAKAQKRMDNVWEL 528

Query: 533 LNFT-LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           + +      +    +L ++I++L       +     +   +++MT+H +KGLE P V+LV
Sbjct: 529 IEWVGRLLAKKPEHTLADVINKLILIDILEQSD-EQDTESLQLMTLHASKGLEFPYVYLV 587

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      +     EE  RL 
Sbjct: 588 GMEEELLPH-----------------------------------RVSIDDDQIEEERRLA 612

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           YVG+TRA   L     +      +         + +   N    
Sbjct: 613 YVGITRAQKGLCFTLANQRRRGGEMQDCLPSRFLEELPPNHLEW 656


>gi|53719591|ref|YP_108577.1| putative helicase [Burkholderia pseudomallei K96243]
 gi|52210005|emb|CAH35978.1| putative helicase [Burkholderia pseudomallei K96243]
          Length = 787

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 112/736 (15%), Positives = 220/736 (29%), Gaps = 161/736 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
             A    S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVAGKAGSSLASFANLIAKMRAETARMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------ALESDGLEEERRLMYVAITRAKERLY 645

Query: 664 ICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    +     + + N R+ +              K++           A          
Sbjct: 646 LSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWSRDWFARP 705

Query: 722 TPLEREETIKQLMDEQ 737
               R+  +   +   
Sbjct: 706 GGGARQGVVDAAVSAP 721


>gi|53804812|ref|YP_113512.1| DNA-dependent helicase II [Methylococcus capsulatus str. Bath]
 gi|53758573|gb|AAU92864.1| DNA helicase II [Methylococcus capsulatus str. Bath]
          Length = 726

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 116/722 (16%), Positives = 225/722 (31%), Gaps = 133/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI++  W L    VS                +  + + L   S        
Sbjct: 30  GAGSGKTRVLIHRIAWLLRAEGVSPHAILAVTFTNKAANEMKARLEALLDLSTRDLWVGT 89

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          +     + + +   ++  LK  + +  +   R         
Sbjct: 90  FHGLAHRLLRRHAADAGLHEGFQILDSDDQYRLIRRLLKTLELDEARWPPRQIQWYINAQ 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +  S        + +   YEE  +++ ++DF +L++ T++ L+     A +
Sbjct: 150 KDQGRRARNLPDSYDPFERQMRRIYLAYEELCQRSGLVDFAELLLRTHEFLRDN---ADV 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   H+L+DE QDT+ +Q+  +R LT+D             L  VGD+ QSIY +
Sbjct: 207 LAHYQERFQHVLVDEFQDTNDVQYAWLRLLTQD----------RDNLSVVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R +R   +          +I L  ++RST +IL+  + + +  E   G + 
Sbjct: 257 RGAKVENLHRFRRDYPRH--------RMIRLEQNYRSTGNILSAANTLIARNEGRLGKNL 308

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                                              +  S  + F+   +       A  +
Sbjct: 309 W----------------------------TEGGRGEPISVYAAFNEQDE-------AGFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I   +              +  D  +L R    +             + I       
Sbjct: 334 VNRIGRWVREGG----------RRSDAAILYRSNAQSRQFEERLLA----HGIPYRVYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD +A  R + ++ DD  F  ++ +P        +  +    R E  +++ 
Sbjct: 380 LRFFERAEIKDALAYLRLMANRHDDPGFERVINTPTRGIGAKTLDLVRELARFERLSLWS 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +K                  +  +  +   AQ  +  +   L +      + +    G
Sbjct: 440 AARKLIADNVLPARATGALAGFLDLVETMAGAAQGRALWEQVELAVKGSGLLEHYRKEKG 499

Query: 523 NEVI---DVLDEFLNFTLRNEQNS--YSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
            +     + L+E +    + E +      L  L   L        +       + V++MT
Sbjct: 500 EQAEARVENLEELVGAARQFELSPLIDPELGGLDQFLAHAALEAGENQGETFEDCVQLMT 559

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE  +VFLV     +F                                    L 
Sbjct: 560 LHAAKGLEFDLVFLVGLEEGLFPS----------------------------------LQ 585

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                +  EE  RL YVG+TRA  +L I          K         + +   +     
Sbjct: 586 SLEDPARLEEERRLCYVGITRARRKLYITHAECRRLYGKETYPRRSRFLRELPPDCLEEV 645

Query: 697 KI 698
           ++
Sbjct: 646 RM 647


>gi|283786520|ref|YP_003366385.1| exodeoxyribonuclease V beta subunit [Citrobacter rodentium ICC168]
 gi|282949974|emb|CBG89602.1| exodeoxyribonuclease V beta subunit [Citrobacter rodentium ICC168]
          Length = 1182

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 113/872 (12%), Positives = 266/872 (30%), Gaps = 124/872 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 D      +    L        +       K++   L F+D++   +  L+  +  
Sbjct: 309  LFVAIDALLAEPLTIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDAALR-SESG 367

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +   I       +IDE QDT   Q+ + R +                L  +GD KQ+I
Sbjct: 368  DALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------QQPETALLLIGDPKQAI 419

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    ++ +     R T          L  ++RS   ++  V+++F+  ++A  
Sbjct: 420  YAFRGADIFTYMKARSEVSARYT----------LDTNWRSAPGMVNSVNRLFTQMDDAFM 469

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
              E     ++                 +  +   +  P    W    +S       S +A
Sbjct: 470  FREIPFQPVKSAGKNQS----------LRFEFHGETQPAMTMWLMEGESCGVGDYQSYMA 519

Query: 347  RRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            +  A  I + +                R + A DI VLVR R++  L+      L     
Sbjct: 520  QVCAAQIRDWLEAGQRGEALLVRGDHSRAVSASDISVLVRSRQEAALVRDALTLL---AI 576

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +     
Sbjct: 577  PSVYLSNRDSVFETLEAQEMLWILQAVMTPERENTLRSALATSVMGLNARDIETLNESES 636

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
              + V E    +        + V+  + +L+              +L    G ++     
Sbjct: 637  AWDRVVEEFVDYRQIWQK--RGVMPMLRKLMSSQH------IAENLLATPGGERRLTDIL 688

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---EQYPPTIKRAHSANHNEVRIMTVH 578
                   + E L       ++ Y+ ++ L   +   +    + +    ++ + V+I+T+H
Sbjct: 689  ------HISELLQEAASQLESEYALVRWLSQHILEPDSNAASQQMRLESDKHLVQIVTIH 742

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V+L    +     +                      ++    +   + I  
Sbjct: 743  KSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------NSFEAVLDLSHAEESIAL 789

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYDSFHND 692
             +     E  RLLYV +TR+     +          +   +   +Q     ++      D
Sbjct: 790  AEAERLAEDLRLLYVALTRSIWHCSLGVAPLVRRRGDKKGDTDIHQSALGRLLQKGEAKD 849

Query: 693  ERVKKI------------KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                +             ++ +  +     + +  +       + R       +      
Sbjct: 850  AAGLRAAIGAICDENIHCRMPDVASTASLPSSDEVSASLNARRVRRAPGDSWRVTSYSGL 909

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKT-NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            ++    I  D+     ++ + +          +     +  + G  +H L + +      
Sbjct: 910  QQRGHGIAQDLMPRLDIDATGVGEATVLAPERTPHQFPRGASPGTFLHSLFEDLDFTQPV 969

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGK-- 854
                          +          + +I R   N     ++   + +   E+       
Sbjct: 970  DAAWVREKLELGGYEEEWEPTLTAWIEAILRAPLNETGVTLSQLSAREKQVEMEFYLPIA 1029

Query: 855  ------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
                                    +   +   ++ G ID +   Q   ++ +YK++    
Sbjct: 1030 QPLIAGELDALIRQYDPLSAGCPPLEFAQVRGMLKGFIDLVFRHQGRYYLLDYKSNWLGE 1089

Query: 891  QEIEHIPY---------THIAQLSIYEKILKD 913
                + P           +  Q  +Y   L  
Sbjct: 1090 NSQAYTPEAMASAMQAHRYDLQYQLYTLALHR 1121


>gi|146280569|ref|YP_001170722.1| DNA-dependent helicase II [Pseudomonas stutzeri A1501]
 gi|145568774|gb|ABP77880.1| DNA helicase II [Pseudomonas stutzeri A1501]
          Length = 729

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 117/724 (16%), Positives = 238/724 (32%), Gaps = 136/724 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-LKKAQTLQQASQTQCIEE 64
           G    ++  L+++  W L   + + ++  +S++          ++ + L   +       
Sbjct: 32  GAGSGKTRVLVHRIAW-LHQVERASLHSILSVTFTNKAAAEMRQRIEQLLHVNPQGMWVG 90

Query: 65  RF--------------SLLSSFFLTQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIK 109
            F              + L+  F       Q+ ++ + I +    + +   +++Q     
Sbjct: 91  TFHGLAHRLLRAHWREAKLAENFQILDSDDQQRLVKRVIRELGLDEQRWPARQAQWWINA 150

Query: 110 IRDRFNTYKMFKSTLASLTLAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            +D     +  +         +  +   YEEA  +  V+DF +L++   DL +       
Sbjct: 151 QKDEGLRPRNIQPGGDLFLATQLKIYEAYEEACARAGVIDFSELLLRALDLWRDHPG--- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+ QSIY 
Sbjct: 208 LLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAK----------GGESLMVVGDDDQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + + +                  I L  ++RSTA IL   + + +  +   G  
Sbjct: 258 WRGARIENLHQFSADFP--------DAETIRLEQNYRSTACILKAANALIANNQGRLGK- 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW        S C  +  S  + F+   +       AR 
Sbjct: 309 --------------------ELW-------TSGCEGEPISLYAAFNEHDE-------ARY 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +  +I   I             +   +I +L R    + ++           KI      
Sbjct: 335 VVESIEKAIRDG----------MSRSEIAILYRSNAQSRVLEEAL----LREKIPYRIYG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                +   IK+ MA  R I ++++D +   ++  P     E  +  +    R +  +++
Sbjct: 381 GQRFFERAEIKNAMAYLRLIQTRDNDAALERVINVPARGIGEKTVECLRQLAREQGLSMW 440

Query: 468 EY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                    +  +    S     ++ +  L    +    H    L++             
Sbjct: 441 AALHQAVGTKAVSGRAASALNGFVELVDTLALKVEKLPLHSMAQLVIEESGLLAYHRDEK 500

Query: 522 GNEVI---DVLDEFLNFTLRNE---QNSYSSLQELISELEQYPPTIKRAHSAN-HNEVRI 574
           G +     + L+E ++     +   +        L + L+          + +  + V++
Sbjct: 501 GEKAQARVENLEELVSAARAFDSYSEEEDDIQSPLAAFLDHASLEAGEQQAGDHEDSVQL 560

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H+AKGLE P+VFLV     +F HK                                 
Sbjct: 561 MTLHSAKGLEFPLVFLVGMEEGLFPHKMSL------------------------------ 590

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                +    EE  RL YVG+TRA  QL+I                    V +      +
Sbjct: 591 ----EESGRLEEERRLAYVGITRAMQQLVITYAETRRLYGSETYNKVSRFVREIPPALVQ 646

Query: 695 VKKI 698
             ++
Sbjct: 647 EVRL 650


>gi|294677028|ref|YP_003577643.1| DNA helicase II [Rhodobacter capsulatus SB 1003]
 gi|294475848|gb|ADE85236.1| DNA helicase II [Rhodobacter capsulatus SB 1003]
          Length = 852

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 107/745 (14%), Positives = 208/745 (27%), Gaps = 122/745 (16%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+        +++  LL    L      ++          +  L   +   ++       
Sbjct: 133 LRSNFTILDTDDQIRLLKQLILAANMDEKRWP--------ARQLAGLIDSWKNRAWTPEH 184

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                               L A Y++  +    +DF DL+++   + ++      +  +
Sbjct: 185 VRGADTAHFDNRG-----SELYAAYQDRLRTLNAVDFGDLLLHMVTIFQRHPD---VLQQ 236

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   +IL+DE QDT+  Q+  +R L +            R +  VGD+ QSIY + GA
Sbjct: 237 YQRWFRYILVDEYQDTNTAQYLWLRLLAQ----------GHRNICCVGDDDQSIYGWRGA 286

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E   +LR ++              ++ L  ++RST  IL     + +   +  G +  + 
Sbjct: 287 EVGNILRFEKDFP--------GAVVVRLEQNYRSTEHILAAASGLIAANRDRLGKTLWTA 338

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL------- 345
                +   IG     +    +  + +   N       +  ++  +              
Sbjct: 339 DKGGEKVRLIGHWDGDEEARWIGEEIEKLYNGSHPLAKNRRNTRSKTHEQEFERRVKNQL 398

Query: 346 --------------ARRIAYTISNM--------IGTDTIFSNGKKRVIQAKDILVLVRKR 383
                          RRI   I           +   +       +     +I +LVR  
Sbjct: 399 PPMLPEIPPDTLLSDRRIFGDIHTRGLLLKQYGLEDRSSNVEALFQSFMLGEITILVRAS 458

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                             +           +   I+D MA  R  +S +DDL+F  ++  
Sbjct: 459 HQMRAFEDRF----LTIGLPYRVIGGPRFYERQEIRDAMAYFRLAVSPDDDLAFERVVNL 514

Query: 444 PLFNFSEDDIFKICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
           P     +     I T   + E                        +  +  I        
Sbjct: 515 PKRGLGDKAQAVIQTCARQAEAGLVMGAKAALQQGAIGGKAAGALRAFLDGIGRWHAAVL 574

Query: 497 FC-SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELIS 552
                      IL        +++    E    ++ L E +      E         L  
Sbjct: 575 ENADHVRLAETILEESGYTDMWLADKTPEAPGRLENLKELVKALESFEN--------LQG 626

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            LE     +      + ++V IMT+H AKGLE P VFL      +F  +           
Sbjct: 627 FLEHVALIMDNDKDQSEDKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQR---------- 676

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                  +        EE  RL YVG+TRA +   I      + 
Sbjct: 677 ----------------------ALDEGGLRALEEERRLAYVGITRAEEICTIS----FAG 710

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
            ++   +    +           +   LT              T          +  +  
Sbjct: 711 NRRVYGQWQSQLPSRFIDELPATRVEVLTPPGLYGGGFGAATQTGFGSLEARATKADVYN 770

Query: 733 LMDEQKIPKKLFSPIKNDINEPYIL 757
               +++  +  +P +        +
Sbjct: 771 SPGWKRMESRASTPPRPKARTVTTV 795


>gi|260774508|ref|ZP_05883422.1| ATP-dependent DNA helicase Rep [Vibrio metschnikovii CIP 69.14]
 gi|260610635|gb|EEX35840.1| ATP-dependent DNA helicase Rep [Vibrio metschnikovii CIP 69.14]
          Length = 672

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 221/660 (33%), Gaps = 131/660 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +A   +     F       L ++ T  +    +++ ++   L   +   +++ +  +   
Sbjct: 97  KALGLKPGFSLFDDQDQLALLKELTESQLEGDKDLLRQ---LLSTISNWKNDMVSPQQAK 153

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              K  +       L  +    Y++  +    LDF+DLI     LL+       +R +  
Sbjct: 154 AIAKGEQQ-----QLFAFCYECYQKQMQAYNALDFDDLISLPVRLLRDH---QEVRTRWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+ GA P
Sbjct: 206 SRIRYLLVDEYQDTNTSQYELVKLLVGE----------RGRLTVVGDDDQSIYSWRGARP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + +++  +              +I+L  ++RST+ IL   + + +   +       S   
Sbjct: 256 QNLVQLGQDFSH--------LKLIKLEQNYRSTSRILRAANILIANNPHVYEKVLFSD-- 305

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                                        P  E       +     +  + A  IA+   
Sbjct: 306 ----------------------------IPDGEKLKVIIANNEDHEAERVTAELIAH--- 334

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                            + +D  +L R    + LI           ++    +       
Sbjct: 335 -----------KFLNRTEYRDYAILYRGNHQSRLIEKSL----MQNRVPYKLSGGTSFFA 379

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF 473
              IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++    + 
Sbjct: 380 RAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFAASFEL 439

Query: 474 ANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFG 522
                         +   +++ E+   A+  +  +    ++               ++  
Sbjct: 440 GLEQHLSGRGLDNVRRFTQWLVEITDNAERGNTVEALRSLVRDIHYEDWLYETSSSAKAA 499

Query: 523 NEVIDVLDEFLNFTLR------NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
              +  + E   + +        +Q    +L+E++  L       +     + + V++MT
Sbjct: 500 EMRMKNVSELYAWIVADLEGDNYDQEE-KTLKEVVQRLTLRDMMERGEQDDDSDAVQLMT 558

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE P V+L+     +  H+                                   
Sbjct: 559 LHASKGLEFPYVYLIGAEEGILPHQTSID------------------------------- 587

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
               +   EE  RL+YVG+TRA  +L            +  + T    + +  ++D   +
Sbjct: 588 ----EENVEEERRLMYVGITRAQRELTFTVCKERRQFGELIKPTQSRFLDELPYDDVEWE 643


>gi|284008541|emb|CBA75080.1| exodeoxyribonuclease V beta subunit [Arsenophonus nasoniae]
          Length = 1164

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 139/986 (14%), Positives = 322/986 (32%), Gaps = 166/986 (16%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPT--ILKKAQTLQQASQTQCIEERFSLLSSFF 73
            + K+LW L      D+    +++  + +     L  A     A       +    L+   
Sbjct: 197  VVKELWLLNSANFLDLISDSAINKRSYSRRNLPLWLAAVTSWAQSATVDYKIPKELA--- 253

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
                          E+  K+P       +       +  +  T +    + A + + + +
Sbjct: 254  ---------RFSHSELLDKTPTGNVPEHEVFLVIDNLLQQSLTLRDLIISNAIINIRQTI 304

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                 + KK+   + F+DL+ + +  L+  +    +   I      ++IDE QDT   Q+
Sbjct: 305  V----KEKKRRGEIGFDDLLSHLDQALQA-EGGERLANAIRNRYPVVMIDEFQDTDPQQY 359

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             + + + +          +   L  +GD KQ+IY+F GA+    L+ K   +   T    
Sbjct: 360  RIFQFIYQG--------HNHCGLLFIGDPKQAIYAFRGADIFTYLKAKDQIESHYT---- 407

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RS+ +++  V+++FS         +    T+              + + 
Sbjct: 408  ------LDTNWRSSPNMIEAVNQLFSRVAKPFVFEQIPFNTVNPAP----------VNQH 451

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKK 368
            +   H+++            +++        +A + A  I + +         ++ +  K
Sbjct: 452  LAFIHNTERLSALNFCYLDKETVSILDYQQTMAYQCANQICDWLKGGEKGTTWLYRDNVK 511

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI-SVVGNDRFILTDHLAIKDLMALGRF 427
            + + A DI+VLVR R++      + R   + + I SV  +++  +      +DL+ L + 
Sbjct: 512  QPVTAADIMVLVRSRREA----VMIREALSKFNISSVFLSNQESVFATDEARDLLWLLQA 567

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +LS E + +  C L + L   S  DI ++    ++ E  +E   +     +  +Q     
Sbjct: 568  VLSPEKERTLRCALATRLIGLSAQDIEQL----NQDENQWEKRVEEFANYLLIWQR-HGI 622

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSY 544
            +  L  I       +    ++   +G ++ +          L E L      L +E    
Sbjct: 623  LPTLRAIIVNHRIAENL--LMDNIEGERRLMDVM------HLSELLQEAELQLDSEHALA 674

Query: 545  SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
              L   I + +      +    ++ + V I T+H +KGLE P+V+L              
Sbjct: 675  RWLARQIDQPDPLLENQQIRLESDKHLVSISTIHKSKGLEFPIVWLPFACQFSQQKLATF 734

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                        ++ I+   +    E  RLLYV +TR+     +
Sbjct: 735  HDRANFQT-------------CLDLTEQAESIRLADEERLAEDLRLLYVALTRSKYHCSV 781

Query: 665  CK-------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-------DEWI 710
                      S  S +   +Q     ++ +    +  + +  L    ++        +  
Sbjct: 782  GIAPIIKGRPSGQSGDTDLHQSALGYLLQNGQQVNAALLREALDGLASENISITAISDIN 841

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----- 765
               W     +   L       Q+ +  ++        ++  +       S ++ +     
Sbjct: 842  LSPWYPKENKPVTLLARNFTGQIQNSWRVTSYSGLTYQDIYSSSDKFTASDVNIEMAIQA 901

Query: 766  -----------------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                             G+    S+ +  +    G  +H LL+++    +H ++ ++   
Sbjct: 902  LAPKMDADAQGDSLLVQGEIADRSVHTFPKGATAGTFLHSLLELLPFN-QHPQECWLAEK 960

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS------CDSYSEVSVSGKIN------ 856
              ++   + A     L + +  + + P++               +E+     I       
Sbjct: 961  LEQSG--FSADWAPTLKMWLINIFDTPLLKNNFRLSKIAPEYQLNEMQFYLPIEKLLLSS 1018

Query: 857  --------------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                                      ++ G ID +   Q   ++ +YK++      + + 
Sbjct: 1019 ALDRLVHQYDALSQRCPPLSFEPVTGVLKGYIDLVFCWQDKFYLLDYKSNWLGENGLAYS 1078

Query: 897  PY---------THIAQLSIYEKILKD 913
                        +  Q  +Y   L  
Sbjct: 1079 QEAIQSSMIDHRYDLQYQLYTLALHR 1104


>gi|307566117|ref|ZP_07628575.1| putative phage head-tail adaptor [Prevotella amnii CRIS 21A-A]
 gi|307345305|gb|EFN90684.1| putative phage head-tail adaptor [Prevotella amnii CRIS 21A-A]
          Length = 1140

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 145/885 (16%), Positives = 289/885 (32%), Gaps = 61/885 (6%)

Query: 76   QKFTPQKNIITQEINKK-SPDLKE--KLKKSQDEFIKIR----DRFNTYKMFKSTLASLT 128
             K     +  +++ +K       E   L K   +    R     R+NT K+     + L 
Sbjct: 287  GKKQWNSSKCSKKADKDSLNSFVESIALNKIVYDMEAYRIAGWKRYNTCKVVLLHFSKLR 346

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEV 185
            L   +    EE   +N       ++ NT  LLK     +   ++  +I   + +I+IDE 
Sbjct: 347  LLHKIAKQVEEDNVENHRF----MLSNTQSLLKNLMKDNDIPFVFERIGAMLKYIMIDEF 402

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDTS +QW+  + L  +      +H+       VGD KQSIY +   + + +   +   +
Sbjct: 403  QDTSRVQWDNFKKLLLNCMAEAGSHN-----LLVGDVKQSIYRWRQGDWELLNNIEESIK 457

Query: 246  KRATNA--GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED------STTTIRH 297
                +        +  L  ++RS  +I++  +  FS   N    +ED      S  T   
Sbjct: 458  PSQGSYVDTSSIEVKTLATNYRSEKNIISFNNAFFSQAINVYAQTEDSITDNNSKKTTSS 517

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S  +      +L              ++  +           + + +   +A  I  ++
Sbjct: 518  NSKHLSTQQIDKLKLAYSDVEQQSAKSEERGFVHASLYGKDADNNAKILSDMADNIKRLL 577

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                            K I +LVR +++   I            I++V  + F L   LA
Sbjct: 578  DMGYAQ----------KSIAILVRSKREIADIVTTINSTPWGRDITIVSEEAFRLDASLA 627

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            +  L+   R I    D+L+   ++++     + D  F    +R            +    
Sbjct: 628  VNILVEALRLIAQPYDNLTRAKLVRAYYKVINHDKDFA--KERTHILVSDVVDIPYDENY 685

Query: 478  ISKFQHVIKY-IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV--LDEFLN 534
              K    I   ++  +             L +     R   + +  N   +   +  F +
Sbjct: 686  YEKKADFIAKHLNGFLPEEYVLERDKLLRLSMVDLVDRLYHLFQLHNLPTENAYISTFYD 745

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                   N+ S + + I E +          + + + +RI+T+H +KGLE   V +    
Sbjct: 746  TLNDYLSNNTSDIDDFIKEWD-DNLCGVNIQTEDVDGIRILTIHKSKGLEFDNVVIPFCD 804

Query: 595  SQV--FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
             ++  ++           +   +  I     +    N+  +   K        +   LLY
Sbjct: 805  WELEKWTTIFWVDGKKKEAPFSELPIIPVSFKKDLENSAFASDYKEEHFQNVIDNLNLLY 864

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V  TRA   L I   +   + ++S        V      +    + +       DE I +
Sbjct: 865  VAFTRAGKNLFISGKNINDSNRRSYLLWHCLEVLGKELKNAEYVEEEKQEQQGGDEPITF 924

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
             + T  P     + E   K +++   I  +         N       S          E 
Sbjct: 925  TFGTLIPAAEYDKTESQEKTMLNPFTIVPQAKELDIETFNSAVSFRQSNKSDAFIHGQE- 983

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
            +    +    G ++H +   I T      +  + +   +          K L   IT  +
Sbjct: 984  VSKRQRYMQVGSVLHNIFSSIKTF--ADIEPHLQALEAEGIIYNDDVSSKELRQQITSAV 1041

Query: 833  ENPMMTTAMSC--DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
             N  +    S     Y+E ++         D     R D++ + +  + + +YK      
Sbjct: 1042 NNEQVKEWFSQEWKVYNECAILQ--YDKTTDSCFEQRPDRVIMKEGKVVVIDYKFGSP-- 1097

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                     +  Q+  Y ++LK      ++   L YV   +V  +
Sbjct: 1098 ------REEYHEQVQRYMQLLKKM-GYCNISGYLWYVMRGEVVEV 1135


>gi|301155111|emb|CBW14574.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus
           parainfluenzae T3T1]
          Length = 670

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 111/638 (17%), Positives = 215/638 (33%), Gaps = 122/638 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +    + +    L+E +    +    +      Y + K   A          
Sbjct: 112 DQLALLKELTADVLQEDKDLLRELISVISNWKNDLVSPKQAYALAK--DAKYQTFAKCYE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y    +    LDF+DLI+    L K+ +    +R K  ++I ++L+DE QDT+  Q+E+
Sbjct: 170 RYAAQIRAYNALDFDDLIMLPTLLFKQNEE---VRSKWQEKIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I+ L  +                VGD+ QSIYS+ GA P+ ++R +    +         
Sbjct: 227 IKLLVGE----------RACFTVVGDDDQSIYSWRGARPQNMVRLRDDFPR--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST  IL   + +    E+       S                        
Sbjct: 269 QVIKLEQNYRSTHRILHCANILIDNNEHVFDKKLFSNL---------------------- 306

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    + E          +  +  I+A  IA+                 R  + KD
Sbjct: 307 --------GEGEKLQVIEAKNEEHEAERIVAELIAHR--------------FSRKTKFKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L+  +        +I    +          IKD+MA  R +++Q+DD 
Sbjct: 345 YAILYRGNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLLVNQDDDA 400

Query: 436 SFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+    + +  +++E I +F              Q   ++I
Sbjct: 401 AFLRIVNTPKREIGTATLQKLGELAQEKHISLFEAIFEFELMQRVTPKAYDALQKFGRWI 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN---- 539
            EL   +    P      +L +    +       +          +    ++        
Sbjct: 461 VELNDQSLRSDPETAVRSLLSSLHYEEYLYEYATSPKAAEMQSKNVATLFSWVEDMLKGD 520

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E N   +L ++++ L       +       ++V++MT+H +KGLE P V+L+     +  
Sbjct: 521 EVNEPMNLNQVVTRLTLRDMMERGEDDDESDQVQLMTLHASKGLEFPHVYLIGMEEGILP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 581 HQTSID-----------------------------------EDNVEEERRLAYVGITRAQ 605

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             L            +  +      + +   +D + +K
Sbjct: 606 QTLTFSLCRERRQFGELIRPEPSRFLAELPQDDVQWEK 643


>gi|121999202|ref|YP_001003989.1| UvrD/REP helicase [Halorhodospira halophila SL1]
 gi|121590607|gb|ABM63187.1| ATP-dependent DNA helicase UvrD [Halorhodospira halophila SL1]
          Length = 725

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 195/620 (31%), Gaps = 115/620 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+A ++  ++DF +L++   +LL+       +     +   HIL+DE QDT+ +
Sbjct: 172 AVYHDYEQACRRGGLVDFSELLLRAYELLRDDPE---LLGHYQRRFAHILVDEFQDTNAL 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  +             LF VGD+ QSIY + GA  + +   +R         
Sbjct: 229 QYRWLKLLGGE----------QSELFVVGDDDQSIYGWRGARVENIEHFRREM------- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL   +++        G                      QLW
Sbjct: 272 -GDVRVVRLEQNYRSTGTILDAANRLIEHNSGRLGK---------------------QLW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  +  + F+ + +       AR +   I  +               
Sbjct: 310 -------TDGWSGEPITLYAAFNEVDE-------ARWVVDRIRQLSEEGGYGH------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    +  +           ++           +   +KD +A  R + ++
Sbjct: 349 --ADFAILYRSNAQSRALEHELHA----ARLPFRVYGGLRFFERAEVKDALAYLRLVANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF------ANCGISKFQHV 484
            DD SF  ++ +P        +  +    R    +++   ++       A    +     
Sbjct: 403 HDDASFERVVNTPPRGIGAKTVDAVRYAAREADVSMWRAARELTGSRALAARARNALASF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           ++ I  L         HD    ++     R+          ++ LDE +       Q   
Sbjct: 463 LERIDALDSELTDRPLHDQVEQVIARTDLRRH--HERDEARLENLDELVTAARTFAQRDE 520

Query: 545 S--SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               L  L + L        +       + V++MT+H+AKGLE PVVFLV     +F H+
Sbjct: 521 PEDDLDPLAAFLTHAALEAGEGQADDWEHSVQLMTLHSAKGLEFPVVFLVGMEEGLFPHR 580

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              +                                       EE  RL YVGMTRA  +
Sbjct: 581 MSVEEPG----------------------------------RLEEERRLCYVGMTRARQR 606

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           LI+                    + +         + +++         A   S      
Sbjct: 607 LILTHAEKRRLHGMDQLARPSRFLTEIPGEHLEEVRPRMSVRRGPPSVPASGGSGSSLPA 666

Query: 722 TPLEREETIKQLMDEQKIPK 741
                  ++   +   +   
Sbjct: 667 DAPPEGLSLGSRVHHPRFGD 686


>gi|260428560|ref|ZP_05782539.1| DNA helicase II [Citreicella sp. SE45]
 gi|260423052|gb|EEX16303.1| DNA helicase II [Citreicella sp. SE45]
          Length = 815

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/668 (15%), Positives = 195/668 (29%), Gaps = 152/668 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   ++    DF DL+++   + +       +  +  +   +IL+DE QDT++ 
Sbjct: 195 ELYEQYQTRLRELNACDFGDLLLHMVTIFQTH---QDVLEQYQRWFRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L            + + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLAG----------AHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RSTA IL     V    E   G                      +LW
Sbjct: 296 --GAHVVRLEQNYRSTAHILAAASGVIRGNEGRLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   +    ++     ++D   +       AR I   I  +            R  
Sbjct: 333 -------TAADGGEKVRLIGHWDGEEE-------ARWIGEEIEALQKG-----TRGIRPH 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + L I+D MA  R ++S 
Sbjct: 374 SLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRLVVSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
           +DDL+F  ++ +P     +     I    R    ++ E        ++    G  + + +
Sbjct: 430 DDDLAFERIVNTPKRGLGDKAQQVIQHTAREFGVSLIEGARIAVEEERIKGKGGGQLRLL 489

Query: 485 IKYIHELIHIA----------------------------------QFCSPHDFFTLILGA 510
            + +                                            +  +   +IL  
Sbjct: 490 CENLARWRETMLGPVLRPGEIDGDDPTDVIDDEPAFVVGGTRRGRPRVTHMELAEMILDE 549

Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                 + +    E    ++ L E +    + E         L   LE     +      
Sbjct: 550 SGYTAMWQADKTPEAPGRLENLKELVKALEQFEN--------LQGFLEHVALIMDNESEE 601

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              +V IMT+H AKGLE P VFL      +F  +       +                  
Sbjct: 602 AGAKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGV------------------ 643

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                            EE  RL YVG+TRA +   I    N     +         +  
Sbjct: 644 --------------KGLEEERRLAYVGITRAEELCTISFAGNRRVFGQWQSALPSRFI-- 687

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                E   ++     +    + A               E  +      +++ ++     
Sbjct: 688 -DELPEEHVEVLTPPGLYGGGYGAAAAYGTGSGLETRAAEANVYNSPGWKRLQERSTQRP 746

Query: 748 KNDINEPY 755
            +   E  
Sbjct: 747 VSQPRESR 754


>gi|194337239|ref|YP_002019033.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309716|gb|ACF44416.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 739

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 111/632 (17%), Positives = 204/632 (32%), Gaps = 122/632 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y    K+N  LDF+DL+I   +L         +  ++ +   +I+IDE QDT+
Sbjct: 170 ASQIYELYARKLKENNALDFDDLLIKPLELFNAHPE---VLQELQETFRYIMIDEYQDTN 226

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ V + L           +  R +F VGD+ QSIYS+ GA+   +L  +        
Sbjct: 227 RAQYLVAKML----------GAKHRNIFVVGDDAQSIYSWRGADISNILNFQDDYHDAL- 275

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                    +L  ++RST +IL   + V S                              
Sbjct: 276 -------TFKLVENYRSTGNILKAANNVISCNLRQIKK---------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
             E +  +++ +     E++                A R+   I N+           K+
Sbjct: 307 --ELISHRNEGEPLTLIEAYN-----------ERNEAERVGEQIRNL---------RLKQ 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + +   V  R    + ++  + R     +KI               IKD +A  RFIL
Sbjct: 345 GFEFRSFAVFYRTNAQSRVLEDVMR----QHKIPYKIFGSVSFYKRKEIKDAVAYLRFIL 400

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKFQH 483
           +  D  S + ++  P     +  I K+         ++YE I       F    ++    
Sbjct: 401 NDRDGESLLRIINFPPRKIGDVSIAKLREFAEDRQISLYEAILHSGEGGFQPRLVNALSS 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               I  L  +A   + ++  T +           +    E     + L E L+      
Sbjct: 461 FSAVIETLRKVAVDGTVYEVLTELFTLTSIPLLLQTENTPESLVRYENLQELLSMARDFS 520

Query: 541 QNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++    SL + +  +             + N V +MTVH AKGLE PVVF+     ++F
Sbjct: 521 DHNPDTGSLGDFLENISLASD--YDETQESDNYVSLMTVHAAKGLEFPVVFITGLEERLF 578

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                +   +    EE  RL YV MTRA
Sbjct: 579 P------------------------------------LHCYEPEELEEERRLFYVAMTRA 602

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +++ +         +    +  + +        +       + +   D     + ++  
Sbjct: 603 QEKIFLSWAQ----SRYQYGQQHHCLRSMFIGEIDASIVQTESGNFLSDRQAKEKVASGF 658

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              +   + +T         +  K   P   +
Sbjct: 659 SSPSRGYQSKTATSSSAVAGVLPKSSQPAFRE 690


>gi|156932704|ref|YP_001436620.1| exonuclease V subunit beta [Cronobacter sakazakii ATCC BAA-894]
 gi|156530958|gb|ABU75784.1| hypothetical protein ESA_00489 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1180

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 135/967 (13%), Positives = 285/967 (29%), Gaps = 137/967 (14%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
            E     +  +      +  +  +L   +G       ++ L            ++   +  
Sbjct: 224  ENAIARIDEVKALWRENAEELAALIQNSGVDKRSYSSRYLPAWL---DQMAAWAQEETNS 280

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
                   +K   +  + K            +    +  D           L        +
Sbjct: 281  WQLPGALEKFAQSTLLEKTKKG-----DAPRHAVFEAIDALLAEPFTIRDLLIARAMAEI 335

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                 + K++   L F+D++   ++ L +      +   I       +IDE QDT   Q+
Sbjct: 336  RYTVAQEKRRRGELGFDDMLSRLDEALNQPG-GEALAAAIRTRYPAAMIDEFQDTDPQQY 394

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             + R +               TL  +GD KQ+IY+F GA+    +R +          G+
Sbjct: 395  RIFRRIWLG--------QQETTLLLIGDPKQAIYAFRGADIFTYMRAR----------GE 436

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +   L  ++RS   ++  V+K+FS  ENA    +     ++  +              
Sbjct: 437  VNAHYTLDTNWRSAPGMVESVNKIFSQMENAFMFRDIPFLAVKPAARNQS---------- 486

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKK 368
            +      +  P  + W    D          +AR  A  I + +         ++   + 
Sbjct: 487  LRFTFAGKTQPAMKLWLMEGDGAGVSDYQQTMARVCAQQIRDWLSAGMKGEALLWREERA 546

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R +QA DI VLVR R +  L+      L      SV  ++R  +       +++ L + +
Sbjct: 547  RPVQASDITVLVRNRIEANLVREALNALNIP---SVYLSNRDSVFATQEALEMLWLLQAV 603

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L+ E +      L + +       I  +    +  + + E    +    +   + V+  +
Sbjct: 604  LAPEVETRLRSALAASMLGLDAPAIEALNENENAWDALVEEFDGYRQIWLR--RGVMPML 661

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY---S 545
              L       +       +L    G ++            L E L        + Y    
Sbjct: 662  RAL------MTHRQVAENLLATPGGERRLTDIL------HLSELLQEASAQADSEYALVR 709

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             L + I+E +    + +    ++ + V+++T+H +KGLE P+V+L          +    
Sbjct: 710  WLAQHIAEPDASASSQQLRLESDKHLVQVVTIHKSKGLEYPLVWLPFIADFREQKQAFYH 769

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ--LI 663
                 +                  +   + ++  +     E  RLLYV +TR+     L 
Sbjct: 770  DRETFTP-------------MLDLSNAEESLELAEMERLAEDLRLLYVALTRSVWHCSLG 816

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK-----------IKLTNSINKDEWIAY 712
            +         K+         +       E +              +        E    
Sbjct: 817  VAPLFRRRGAKEGETDLHRSALGRLIQQGEALDANGLRRCIEALCDENLALEIPGEPDNT 876

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT---- 768
             W         L   E  ++++DE ++                +L    +D  G      
Sbjct: 877  PWMPPESAPPTLAARELQRRIIDEWRVTSYSGLQQHGAGRALDLLPKLDLDGAGARDVPD 936

Query: 769  -NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
              + S  +  +  + G  +H L + I        +             +       L   
Sbjct: 937  EPVMSPHTFPRGASPGTFLHSLFEEIDFTQPVSPEWVTQQL---QLGGFDEAWQPVLSRW 993

Query: 828  ITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKKD-------------------- 861
            I  +L  P+      +    + D   E+     I+   +                     
Sbjct: 994  IDDVLSAPLNETGVSLNQLGAKDKQVELEFYVPIDAALRPEALDALIREHDPFSAQCPPL 1053

Query: 862  ------IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSI 906
                   ++ G ID +   Q   ++ +YK++        +             +  Q  +
Sbjct: 1054 DFRQVRGMLKGFIDLVFRWQGRYYLLDYKSNWLGDSPEAYTVEAMSQAMQTHRYDLQYQL 1113

Query: 907  YEKILKD 913
            Y   L  
Sbjct: 1114 YTLALHR 1120


>gi|226938999|ref|YP_002794070.1| UvrD [Laribacter hongkongensis HLHK9]
 gi|226713923|gb|ACO73061.1| UvrD [Laribacter hongkongensis HLHK9]
          Length = 710

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 115/698 (16%), Positives = 215/698 (30%), Gaps = 124/698 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L     S  +             +  +   +   +        
Sbjct: 28  GAGSGKTRVLTSRIAWLLREGLASPASVLAVTFTNKAAREMQTRVGAMLPVNPRMMWIGT 87

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKL---------KKSQDEFIKI 110
           F  L+   L               + +Q+       L + L         ++      + 
Sbjct: 88  FHGLAHRLLRLHHRDAGLPATFTILDSQDQLAAIKRLLKALNLSDDTYPPRQLMQFINRH 147

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +++       ++  A       +   YE   ++  V+DF +L++ + +LL   +    +R
Sbjct: 148 KEQGLRPDRVQAASAFDGRLIDIWREYERQCRREGVVDFAELLLASFELLTGNEA---LR 204

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                  N IL+DE QDT+ +Q++ +R L               TLFAVGD+ QSIY+F 
Sbjct: 205 AHYQSRFNQILVDEFQDTNRLQYQWLRCLAG----------PAATLFAVGDDDQSIYAFR 254

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GAE   +    R               + L  ++RST  IL   + V +      G S  
Sbjct: 255 GAEIGNMHDFLRDYH--------ITEPVRLEQNYRSTGTILDAANAVIAHNHGRLGKS-- 304

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW       D         +  + D+          A  +A
Sbjct: 305 -------------------LW------TDDAAGEAIRVYRGWNDADE--------AEFVA 331

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +                 ++  D+ VL R    +  +            I+       
Sbjct: 332 EEVRLRRREG----------VELSDMAVLYRSNAQSRALEHAL----FQAGIAYRVVGGL 377

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469
              +   IK  +A  R + S +DD + + ++  P        +  I    R    ++++ 
Sbjct: 378 RFFERQEIKHALAYLRLVASPDDDNALLRVINVPARGIGARTVESIQAHAREAGTSLWQA 437

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528
             +      +     ++ I  L   A         + I+ A   R  + +   G + ++ 
Sbjct: 438 ACRTGGRAAASVGRFVQLIESLQGDAARLDFAGLVSHIIDASGLRALYQADKDGADRLEN 497

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPV 587
           LDE +N  +  + +  +  Q +   L            +     + +MTVH AKGLE   
Sbjct: 498 LDELVNAAVGFQPDDPA--QTVTEFLTHAALEAGDHEATPGETALTLMTVHAAKGLEFDS 555

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VF+      +F H+                                           EE 
Sbjct: 556 VFVTGLEEGLFPHEQSFSDPDG----------------------------------LEEE 581

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            RL+YV +TRA  +L +    +     +S        +
Sbjct: 582 RRLMYVAITRARRRLTLSCAQSRMLHGQSRYPLPSRFL 619


>gi|148951|gb|AAC36867.1| DNA helicase II [Haemophilus influenzae]
 gi|739972|prf||2004269A DNA helicase II
          Length = 727

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 102/551 (18%), Positives = 190/551 (34%), Gaps = 117/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +  ++DF +L+I   +L +K+ +   I  +  Q   HIL+DE QDT+ IQ
Sbjct: 178 IYQIYQDTCDRAGLVDFAELLIRVYELFEKKPL---ILQRYQQRFQHILVDEFQDTNKIQ 234

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ I+ L                +  VGD+ QSIY + GA+ + + +  +          
Sbjct: 235 YKWIKFL----------PGKTGQVMIVGDDDQSIYGWRGAQIENIQKFLKDF-------- 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   I L  ++RSTA+IL   +++ +   +  G +                     LW 
Sbjct: 277 -KAETIRLEQNYRSTANILNSANELIANNSDRLGKN---------------------LW- 313

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S F+ L +       A+ +A  I + +               
Sbjct: 314 ------TEGEKGDPVGIYSAFNELDE-------AKFVASQIQDWVEHGGKLD-------- 352

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VL R    + +I           +I           +   +K   A+   I +++
Sbjct: 353 --DCAVLYRSNSQSRVIEEAL----IRCQIPYRIYGGMRFFELKKLKMRYAIFVLINNRQ 406

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R    T+++ +Q        A           
Sbjct: 407 DDAAFERVINTPTRGIGDRTLDILRNLTRERQITLWQAVQVATQENMLAGRAQQALLRFQ 466

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ- 541
           + I+ L               ++      + +    G +    I+ L+E +  T    + 
Sbjct: 467 ELINSLQLDTAEMPLFAQTDFVIKHSGLYEMYQQEKGEKGEVRIENLEELVTATREFIKP 526

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   + EL + L           ++ H + V +MT+H+AKGLE P VF+V     +F  
Sbjct: 527 DNAEEMTELTAFLTHASLEAGEEQASPHQSCVEMMTLHSAKGLEFPRVFMVGVEEGLFPS 586

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +    EE  RL YVG+TRA  
Sbjct: 587 ----------------------------------FRSFEEPGRLEEERRLAYVGITRAKK 612

Query: 661 QLIICKHSNTS 671
           +L I    +  
Sbjct: 613 KLTISYAESRR 623


>gi|296444468|ref|ZP_06886433.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
 gi|296258115|gb|EFH05177.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
          Length = 777

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 121/784 (15%), Positives = 235/784 (29%), Gaps = 135/784 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ-ASQTQCIEE 64
           G    ++  L  +    L   +                  + ++ +TL    ++      
Sbjct: 54  GAGTGKTRVLTTRIAHILASAKARPWEILAVTFTNKAAREMRERVETLAGPGAEALQWLG 113

Query: 65  RFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS-----QDEFIKIRDRFNT 116
            F  +S+  L +       + N    + + +   LK+ L+       +     +  + + 
Sbjct: 114 TFHAISAKILRRHAELVGLKSNFTILDTDDQIRLLKQVLQAENVDDKRWPPRALAHQIDA 173

Query: 117 YKMFKSTLASLTLAKY----------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
           +K    + A +   +           L A Y+E  K    +DF DL++    L ++    
Sbjct: 174 WKNRGLSPAQVPAGEARSFADGKGGKLYALYQERLKALNAVDFGDLLLEALRLFREN--- 230

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           A +     Q   +IL+DE QDT+  Q+  +R + +              +  VGD+ QS+
Sbjct: 231 ADVLDDYRQRFRYILVDEYQDTNTAQYLWLRLIAQ----------GRHNVCCVGDDDQSV 280

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GAE + +LR ++              I+ L  ++RST  IL     + +  E   G
Sbjct: 281 YGWRGAEVENILRFEKDFP--------GAKIVRLERNYRSTGHILAAASHLIAHNEGRLG 332

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                              D         W S              A
Sbjct: 333 KT------------------------LFTEGADGDKPTVTGVWDS-----------EEEA 357

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R I   I  +                  ++ +LVR              L     +    
Sbjct: 358 RAIGEDIEQLQRKGQDLD----------EVAILVRASFQMREFEDRFITL----GLPYRV 403

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  + L I+D +A  R +    DDL+F  ++ +P     +  +  +    R  +  
Sbjct: 404 IGGPRFYERLEIRDALAYLRCVAQPFDDLAFERIVNTPKRGLGDATLQVLHDYSRQASVP 463

Query: 466 VYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           + +  +      +      +  ++++        +      ++   L+L      Q +  
Sbjct: 464 LTQAARVLVETEELKPKPRATLRNLMADFDRWRGLIDTTPQNELAELVLDESGYTQMWRD 523

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
               E    L+         E   +  L      LE     ++   +A+   V IMT+H 
Sbjct: 524 DKTPEAAGRLENLKELVRAME--EFPDLAGF---LEHVSLVMETDEAADQRRVSIMTLHG 578

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   V+L      +F H+                                      
Sbjct: 579 AKGLEFETVYLPGWEEGLFPHQRSLD--------------------------------DN 606

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            ++  EE  RL YVG+TRA  +L I   +N               + +   +D  V +  
Sbjct: 607 GRAGLEEERRLAYVGVTRAKRRLKIFFATNRRIHGLWQSTIPSRFLDELPASDVEVTEAA 666

Query: 700 LTNSINKDEWIAYEWSTHHPE--NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
             +         +     +    +TP  +     +    +  P            E    
Sbjct: 667 GASQYGSYGVSRFANMDSYGSSYSTPGWKRAQATRESARESGPAARRRAPLTIQGEVLAK 726

Query: 758 NPST 761
           + S+
Sbjct: 727 STSS 730


>gi|81428521|ref|YP_395521.1| ATP-dependent exonuclease, subunit A (N terminal fragment),
           authentic frameshift [Lactobacillus sakei subsp. sakei
           23K]
 gi|123564300|sp|Q38X69|ADDA_LACSS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|78610163|emb|CAI55212.1| ATP-dependent exonuclease, subunit A (N terminal fragment),
           authentic frameshift [Lactobacillus sakei subsp. sakei
           23K]
          Length = 890

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 116/657 (17%), Positives = 220/657 (33%), Gaps = 54/657 (8%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL---- 74
           +               +  + +    T       +   ++T   +     L+   L    
Sbjct: 241 EALQEAEQLSKTSENLMIYAPQI--ATTQAALTQINADAKTLNWQAWRQQLTDAQLGPAK 298

Query: 75  -TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT---YKMFKSTLASLTLA 130
            T+K  P + I    +     D+K+K++   D +    +        +  +     +++ 
Sbjct: 299 RTKKLEPDEQINKDRLKADLDDVKKKIQTLLDTYFVFDEATTANIQRQAGQLVQKLVSVT 358

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 ++  K++  +LDF DL      +L   D  A  R    Q+ + +L+DE QDT+ 
Sbjct: 359 LTFREAFQAEKERRHLLDFSDLEQLCLTILSVEDSPA--RAFYQQKFSEVLVDEYQDTNP 416

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  +I+ +T D          PR LF VGD KQSIY+F  A+P     +        T 
Sbjct: 417 LQETIIQKVTSDH---------PRNLFMVGDVKQSIYAFRLADPSLFKNKYNEFG--VTE 465

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
           A +    I L  +FRS  +I    + +F    +      D       +            
Sbjct: 466 AERDSERIILAENFRSRRNIDDFTNLIFKQLMDENLGELDYDENAALQYGARYYPDQHPT 525

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG---K 367
               +  ++++      +        PQ   +      +A  I  M+       +    K
Sbjct: 526 APTELLLYETKPEEAVAN--------PQLDKSEGQVVAVAKRIQAMMTNGEQIWDKKLEK 577

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            R I+ +DI++L   R +   I    +     + + VV  D         ++ ++AL + 
Sbjct: 578 MRPIEYRDIVLLAPTRGNNLFILDYFK----RFGLPVVIKDAQNYFQTTEVQIMLALLQV 633

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ-----------KFANC 476
           I +   D+  V +L+SP+   +E+++  I       +                       
Sbjct: 634 IDNPNQDIPLVSVLRSPIVGLNENELALIRINDKTDDYYQAVFNFIDQYNEQKVGHLGQQ 693

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
            + K  H +  +     IA+     D    I               G +    L      
Sbjct: 694 VMQKLTHFMALLTSFRTIARQQPIVDLIWTIYQETGFLDYVGGMPAGRQRQANLHALYER 753

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLV 591
               E+N +  L + I  +E+     K         N + + +MT+H +KGLE PVVFL+
Sbjct: 754 ATAYEENGFKGLFQFIQFIERLQKQDKDLAQPTSLENQDAISVMTIHGSKGLEFPVVFLI 813

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           DT  +       +   +               + K        +    +K  + E  
Sbjct: 814 DTSRRFNQQDLQRSYVLDNHGGLGVVYLDSQKRLKVPTLPELAITAQKRKKLRAEEM 870


>gi|116331818|ref|YP_801536.1| DNA/RNA helicase UvrD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125507|gb|ABJ76778.1| DNA/RNA helicase UvrD [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 674

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 105/665 (15%), Positives = 208/665 (31%), Gaps = 133/665 (20%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              FLT      K  + +    +      ++K S   + +  D                +
Sbjct: 113 QEGFLTTLLIANKVELKKAKVSEILGKISRIKNSGPAYREYLDSSLLESD--------QI 164

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+   K+   LDF+DLI+    LL+     A +R +  ++  + ++DE QDT+
Sbjct: 165 ANLIYDSYQTTLKEQNSLDFDDLILLPGILLRD---FAEVREEYHKKFQYFMVDEFQDTN 221

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+  +R+L  +           R L  VGD+ QSIY+F G++   +L  ++       
Sbjct: 222 QTQYVFLRALMGE----------NRNLCVVGDDDQSIYAFRGSDLSLILNFEKDFP---- 267

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               + +++ L  ++RST+ I+   + +     + +     S+                 
Sbjct: 268 ----EANVVRLLENYRSTSVIIQGANSLIKKNLSRRSKELFSSI---------------- 307

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          ++  +    D   +       A  +   I   I  D         
Sbjct: 308 ------------SGGRKIRYLERMDEKDE-------AAYVVDCIREEIIKDARVG----- 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 I +L R    T       R       I       +   D   ++D+++  R I 
Sbjct: 344 ----SQIAILFRTNFQTRPFEEELRS----RSIPYKLVGGYNFFDRKEVRDMISYIRLIA 395

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE----------YIQKFANCGI 478
           +  DD S + +L  P        +  I        E++YE          +I        
Sbjct: 396 NTRDDASLLRILNYPKRGIGPGSVSLIHEKASQTGESLYEILFRICESPDFIPSLQKKIQ 455

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQFISRFGNEVID-----VLDEF 532
           S+  + +  +              F     +      ++ +    +E +       L E 
Sbjct: 456 SEIYNFVNLVERTKKKFSTTPKMYFALREFIQEIGIEKEILLEEKDEKVAKARTFNLSEL 515

Query: 533 LNFTLRNEQNSY----SSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           +N     E+N       +L + I+ L       I        N ++++T+H +KGLE   
Sbjct: 516 VNMISYFEENHDSPEKPTLFDFINRLNLLMEDEIPSDEDKKDNRIQLLTIHQSKGLEFES 575

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V++      +  +  +                                    ++S+ +E 
Sbjct: 576 VYVPGMEEGILPNSRVLT----------------------------------EESSVDEE 601

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RLLYV MTRA   L +   +N     +         + +                   +
Sbjct: 602 RRLLYVAMTRARKHLCLTGVANRRKFGEQIATQASRFLMEIDPETLDWVSNDEVRQQETE 661

Query: 708 EWIAY 712
           ++ A 
Sbjct: 662 DFFAE 666


>gi|71065150|ref|YP_263877.1| ATP-dependent DNA helicase Rep [Psychrobacter arcticus 273-4]
 gi|71038135|gb|AAZ18443.1| ATP-dependent DNA helicase Rep [Psychrobacter arcticus 273-4]
          Length = 677

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 112/651 (17%), Positives = 215/651 (33%), Gaps = 126/651 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      + +   +++ I+      T    +       +   L A YE  
Sbjct: 124 RDNLSGAESRELVGKAIKMISDWKNDLIEPDKAMETLDDPEDM-----IFATLYALYERN 178

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    +L++      +R K    I ++L+DE QDT+  Q+E+I+ L 
Sbjct: 179 LRAYNAVDFDDLIVLPTKILREN---RELRDKWQNRIRYLLVDEYQDTNTAQYEMIKYLV 235

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                             VGD+ QSIY++ GA+P+ +   K    K          I+ L
Sbjct: 236 G----------PQGRFTVVGDDDQSIYAWRGAKPENMGLLKEDFPK--------LKIVML 277

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  ILT  + V +  E+       S              G  +    +  ++D 
Sbjct: 278 EQNYRSTTRILTSANAVITNNEHLFEKKLWSDK------------GQGEKIRIINCRNDD 325

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
             +                        R+A  I          ++  +   + +   VL 
Sbjct: 326 DES-----------------------ERVAKEI---------VTHKLRFGNEWEQYAVLY 353

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R L+    +    +          IKD+M+  R IL+ EDD +F+ +
Sbjct: 354 RSNFQARMLEAQLRQLQ----VPYKLSGGQSFFARSEIKDVMSYLRLILNPEDDSAFLRV 409

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHVIKYIHEL-I 492
           + +P        + K+    +  + ++                  S  +    +I     
Sbjct: 410 INTPKRGMGPATLEKLGLFSQEHSISLLASCTHAGLAHVLPSKAYSTLKEFGDFIEHYTR 469

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFL----NFTLRNEQNS 543
            + Q   P      ++          S           ID +D       +   R E++ 
Sbjct: 470 ELDQHPDPVPIVRQMIDETGYIDFVRSDSKTPQQEKNRIDNIDMLYTSIQSLINRAEEDE 529

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             ++  +I +L       ++    N N+V +MT+H AKGLE   V+++    ++  H   
Sbjct: 530 DRTIDTIIRKLVLLDMLEQQQEEENTNKVNLMTLHAAKGLEFDFVYIMGLEEEMLPH--- 586

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA  +L 
Sbjct: 587 --------------------------------RNSILSETVEEERRLMYVGITRARRELT 614

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +   +      +    +    + +   +              KD     + 
Sbjct: 615 LTLATQRRAGGQMRVTSESRFLDELPEDHIDWPAKAKKQKATKDPAAVADE 665


>gi|271502378|ref|YP_003335404.1| DNA helicase II [Dickeya dadantii Ech586]
 gi|270345933|gb|ACZ78698.1| DNA helicase II [Dickeya dadantii Ech586]
          Length = 720

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 112/728 (15%), Positives = 224/728 (30%), Gaps = 144/728 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  +   L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTNKAAAEMRHRIDQLLGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D +++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHLDAGLPQDFQILDSEDQLRLLKRLIKALNLDEKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINGKKDEGLRPQHIDSYGNPVEQTWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I        N+IL+DE QDT+ IQ+  IR L  D             +  VGD+ 
Sbjct: 204 PH---ILQHYRDRFNNILVDEFQDTNRIQYAWIRLLAGD----------SAKVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + +    R             + I L  ++RSTA+IL   + + +   +
Sbjct: 251 QSIYGWRGAQVENIQHFLRDF--------NDVTTIRLEQNYRSTANILNAANALIAHNGD 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RLGKN---------------------LW-------TDGIEGEPISLYCAFNELDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR +   I                     +  +L R    + ++            + 
Sbjct: 330 --ARFVVNRIKVWQEAGGAL----------SECAILYRSNAQSRVLEEAL----LQQSLP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD ++  R + ++ DD +F  ++ +P     +  +  +    R  
Sbjct: 374 YRIYGGMRFFERQEIKDALSYLRLMTNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDR 433

Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +             +  Q  ++ +  L         H     ++        
Sbjct: 434 QLTLWQATRALLQEKVLAGRAAAALQRFLELVDALASDTADLPLHVQTDRVIRDSGLWSM 493

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G +    ++ L+E +  T +   Q+    L  L + L        +    A  + 
Sbjct: 494 YEQEKGEKGQARVENLEELVTATRQFSYQDEDQDLLPLQAFLSHAALEAGEGQADAYQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFVVGMEEGMFPSQMSLDEGG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA  +L +    +     K         + +    
Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLTYAESRRLYGKETYHRPSRFIGELPPE 639

Query: 692 DERVKKIK 699
                +++
Sbjct: 640 CVEEVRLR 647


>gi|50955506|ref|YP_062794.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951988|gb|AAT89689.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 833

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 114/725 (15%), Positives = 219/725 (30%), Gaps = 140/725 (19%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL-TQ 76
           ++ WP     ++  NK  +   E     +  +AQ +  ++            +     TQ
Sbjct: 89  REAWPSEILAITFTNKAANEMRERVEQLLGGRAQGMWISTFHSACVRILRREAETIGKTQ 148

Query: 77  KFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKIRDRFNTYKMFKSTLASLT-- 128
            FT   +  ++ + K+     +       +  +     K+++     + F  +       
Sbjct: 149 SFTIYDSGDSRALLKRIVKELDADTLGFTVAATGGRISKLKNELTDIEAFARSTNLSDPK 208

Query: 129 --LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +   +   Y    ++    DF+DLI  T  L +       +         HIL+DE Q
Sbjct: 209 EVMFVEIFRQYTRELRRANAFDFDDLIAETVYLFR---AFPKVAALYQSRFRHILVDEYQ 265

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTH-----------------SSPRTLFAVGDEKQSIYSF 229
           DT+  Q+ +IR LT                               +L  VGD  QSIY+F
Sbjct: 266 DTNHAQYALIRELTMPIAPDIADELESYGRNIGKLRDAVGVVPSASLTVVGDSDQSIYAF 325

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + ++  +R              ++ L  ++RST +IL+  + V +   + +    
Sbjct: 326 RGADIRNIVEFERDFP--------GAKVVLLEQNYRSTQNILSAANAVIANNFDRKDKK- 376

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW  V                          S    A+ +
Sbjct: 377 --------------------LWTAVGDGEKIVG--------------YTGYSGHDEAQFV 402

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I  +              +  KDI V  R    T  +  +         +       
Sbjct: 403 ADEIEKLHSDG----------MDYKDIAVFYRTNAQTRALEEIF----IRSALPYKVMGG 448

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
               +   IKD MA    + +  D L+   +L +P          ++         T  +
Sbjct: 449 TKFYERAEIKDAMAYLITVANPADMLALRRILNTPKRGIGPATETQLASYAVDNGVTFRD 508

Query: 469 YIQKF-ANCGISKFQHVIKYIHELIHIA----------QFCSPHDFFTLILGAKKGRQQF 517
            ++   +     K    I  +  L+  A             +  D    +L      +  
Sbjct: 509 AMRDAGSLGLGPKVTAAIVQLSGLLDEATAKADPANPAGAAAVADTLMFLLDGSGYLEVL 568

Query: 518 ISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVR 573
            +    +     + ++E +  T    +N+    L + ++E+       +   S+    V 
Sbjct: 569 RNSRDPQDEARAENVEELVAVTREFARNNPDGTLVDFLTEVSLVAAADEIDDSSGS--VS 626

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+HTAKGLE   VFL      +  H+        P                       
Sbjct: 627 LMTLHTAKGLEYDAVFLTGIEEDLLPHRMSANEPGGP----------------------- 663

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                       E  RL YVG+TRA  +L +      +   ++        + +   +  
Sbjct: 664 -----------AEERRLFYVGITRAKKRLFLSLAMTRAQFGETAVAMPSRYLQEIPSDLI 712

Query: 694 RVKKI 698
             ++ 
Sbjct: 713 DWRQS 717


>gi|145219721|ref|YP_001130430.1| exodeoxyribonuclease V, beta subunit [Prosthecochloris vibrioformis
            DSM 265]
 gi|145205885|gb|ABP36928.1| exodeoxyribonuclease V, beta subunit [Chlorobium phaeovibrioides DSM
            265]
          Length = 1167

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 133/958 (13%), Positives = 288/958 (30%), Gaps = 128/958 (13%)

Query: 17   YKDLW-PLPYFQVSDINKYVSLSMETGNPTILKKAQ---TLQQASQTQCIEERFSLLSSF 72
              ++W          I++   LS   G        +    +    +       F  +  F
Sbjct: 219  IAEMWRDEGEKVKKMISEDRGLSRAAGKYREDDLVELFRGMDAFVEEALPFSLFEGIVKF 278

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
              ++     K   T   +K         +  +  F+ ++     Y               
Sbjct: 279  SASRMAEWTKKKFTPPRHKLFELCDCYHRAIRQRFLALKAELILY--------------- 323

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                  + KK+  +  F+DL+ + +  L   +     R  + +     LIDE QDT   Q
Sbjct: 324  CRDRLPKRKKEANIRFFDDLLHDMHTALFNHEEGEAFRLLLRRRWPTALIDEFQDTDARQ 383

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            +++ RS+ E              LF +GD KQ+IYSF GA+    L+  R  +       
Sbjct: 384  YDIFRSIYEKADGP---------LFLIGDPKQAIYSFRGADVFAYLKASRNVE------- 427

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
             +     L  ++RS   +L   + +FS   +     E S  ++   +        VQ  +
Sbjct: 428  -EGRRFTLTHNWRSVPQLLDAFNVLFSNVPDPFLFGEISYRSLVSGTPEREDRFVVQKDD 486

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
              V       +   +    +        ++  +A  I   + +    +T+      R ++
Sbjct: 487  GRVPLEFLVLDASMKENALFSVDEATGFASEAVAGEIFKLLRSARNGETLIGG---RPLR 543

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            A DI V+VR  +    +      L      SVV +DR  +      +++  L   ++   
Sbjct: 544  ADDIAVIVRSHRQAARVRD---ALTLFAIPSVVRSDR-SVFASNEAREIAILLAALVDPS 599

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
            D+      L + +   S +DI                +    +  + +     +     I
Sbjct: 600  DEGKIRAALITDILGRSGNDI--------------GAMMDDESLWVPQLHFFARLHSLWI 645

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                           L  +  R++ +S   G   +  L   +    + E       + L 
Sbjct: 646  ERGFMTMATVL----LREEDVRRRLLSLAEGERRLTNLLHCIELLHQKEHEEGVGPEALA 701

Query: 552  SELEQY-------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            S   Q            +     +   V+IMT+H +KGL+ PVV+     +         
Sbjct: 702  SWFTQNMVEGGQRDEEYQLRLETDEPAVKIMTIHVSKGLQFPVVYCPFLWNG------SP 755

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                + + +D+    +    S+         +    +    E  RLLYV +TRA     +
Sbjct: 756  AARDVAAFHDEGDKAVLDFGSED----FEHHLVLSHEEQLAEDIRLLYVALTRAVYSCSV 811

Query: 665  CKHSNTSNEKKSNQ-------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                    +   N         T ++ +       +    ++  +        A      
Sbjct: 812  VVAPIRKTQTALNHLLQSGTRETLHEQLNHLIARGDGAVGMRTIDQPGASVQPAALHEAF 871

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLF---SPIKNDINEPYILNPSTIDTKGKTNLESLL 774
              EN    R+    ++    +I    F       +            +    K    S++
Sbjct: 872  RRENGEAVRKVFTGRIDRSWRIASFSFFTRGSYAHPELPDRDEMQRNVPDGAKHPGPSIV 931

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPE--HKRKNFITSYCTKNA-KLWPAKEYKNLLLSITRL 831
            +       G+ +H + + +          +  I +   ++           +++ ++  +
Sbjct: 932  TFPGGAQAGIFMHSIFETLDFSRPFDDSTEEGIKNALERSGYHQQWLPVISSMVRTVLSV 991

Query: 832  -LENPMMTTA----MSCDSY-SEVSVSGKINCPKKDII---------------------I 864
             L     ++     +    + +E+     +     D +                     +
Sbjct: 992  SLGMEDGSSFTLSDLKPGEWVTEMEFFFPLRFLTPDHLSSLARTALHPAQLDFAPVRGML 1051

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILKD 913
             G ID +  +    ++ ++K++H       +             +  Q  +Y   L  
Sbjct: 1052 IGYIDMVFQAGGRYWLLDWKSNHLGESLDSYTKERMEAVMGFHHYDLQYLLYTVALHR 1109


>gi|309751752|gb|ADO81736.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae R2866]
          Length = 671

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 116/644 (18%), Positives = 222/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRAKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 E----------RACFTVVGDDDQSIYSWRGARPENMVRLRDNFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGKGEKLLVIKAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  +++E I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQKKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L      +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSVIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +       ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDESDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELIRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|254489019|ref|ZP_05102224.1| UvrD/REP helicase domain protein [Roseobacter sp. GAI101]
 gi|214045888|gb|EEB86526.1| UvrD/REP helicase domain protein [Roseobacter sp. GAI101]
          Length = 806

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 106/578 (18%), Positives = 175/578 (30%), Gaps = 143/578 (24%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+   K+    DF DL+++   + +  D    +  +  +    IL+DE QDT++ 
Sbjct: 195 EIYKQYQARLKELNACDFGDLLLHMVTIFQTHDD---LLKQYQRWFKFILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L           S  + +  VGD+ QSIY + GAE   +LR +          
Sbjct: 252 QYLWLRLLA----------SGHKNICCVGDDDQSIYGWRGAEVGNILRFETDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V +  +   G +                     LW
Sbjct: 296 --GSHVVRLEQNYRSTPHILAAASGVIAGNQGRLGKT---------------------LW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++     ++D   +       AR I   I +M               
Sbjct: 333 -------TEAREGEKVRLIGHWDGEEE-------ARWIGDEIESMQRGTRDLPK-----F 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + L I+D MA  R + S 
Sbjct: 374 SLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRVVTSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGISKFQHV 484
           +DDL+F  ++ +P     +     I  T R     + E              G ++ + +
Sbjct: 430 DDDLAFERIVNTPKRGLGDKAQQNIQKTARENGVNLVEGARILLANGGIGGKGAAQLRLL 489

Query: 485 IKYIHELIHIA----------------------------QFCSPHDFFTLILGAKKGRQQ 516
           I  I     +                                S  +   +IL        
Sbjct: 490 IDGIERWGQMMRGPRLRVEIDDDSVIDDSAPTTRYEYGPPELSHVELAQIILDESGYTGH 549

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           + +    E    ++ L E +    + E         L   LE     +         +V 
Sbjct: 550 WQNDKTPEAPGRLENLKELVKALEQFEN--------LQGFLEHVSLIMDNESDEGGAKVS 601

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           IMT+H AKGLE P VFL      +F  +                                
Sbjct: 602 IMTLHAAKGLEFPTVFLPGWEDGLFPSQRS------------------------------ 631

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             +        EE  RL YVG+TRA     I   +N  
Sbjct: 632 --MDESGLKGLEEERRLAYVGITRAEQICTISFAANRR 667


>gi|148361128|ref|YP_001252335.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Corby]
 gi|296108458|ref|YP_003620159.1| ATP-dependent DNA helicase [Legionella pneumophila 2300/99 Alcoy]
 gi|148282901|gb|ABQ56989.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Corby]
 gi|295650360|gb|ADG26207.1| ATP-dependent DNA helicase [Legionella pneumophila 2300/99 Alcoy]
          Length = 665

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 106/684 (15%), Positives = 223/684 (32%), Gaps = 140/684 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + NE    +     P    +   +  + +L +       + +   L+        E+   
Sbjct: 58  AANEMRARVSA-FLPAVSRRGLKVATFHTLGLSI-IKRDVSRCD-LKPGFSIFDSEDCLQ 114

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-- 125
           +L  F            + +  +      ++ + K Q +    ++     ++        
Sbjct: 115 ILRGFL----------PVNKATD------RDFILKVQQQISLWKNNLLNPELILQNPPET 158

Query: 126 -SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                A  +   Y+EA K    +DF+DLI    DLL      A +      +I H+L+DE
Sbjct: 159 LLCDEALTIYPRYQEALKAYNAVDFDDLIRLPVDLLNDH---ADVLEYWQNKIRHLLVDE 215

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD++  Q+ +++ L                   VGD+ QSIY++ GA+P+ + + ++  
Sbjct: 216 YQDSNTSQYLLVKKLAG----------VRAHFTVVGDDDQSIYAWRGAKPENLAQLQKDF 265

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +          II+L  ++RST+ IL   + + +  ++       S             
Sbjct: 266 PR--------LKIIKLEQNYRSTSRILHAANHLIAHNQHLFEKKLWSDL----------- 306

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            G  +L   V  + +                          A  +   I+++I       
Sbjct: 307 -GHGELLRVVSCKDEQD-----------------------EAEHV---IADLISH----- 334

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
              +      D  +L R      +   + R     + I    +        L ++D+ A 
Sbjct: 335 -KLRNRTNYSDYAILYRGNHQARIFEKVLR----HHGIPYHISGGQSWFAKLEVRDIFAY 389

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF------ANCG 477
            + + ++ DD +F+  + +P     E  +  +    +    ++Y            A+  
Sbjct: 390 LKLLCNEADDAAFLRAITTPKRGIGESSLDALGRYAQSRGISLYHGSDHLALSEFVADKQ 449

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-----IDVLDEF 532
              F     ++ ++       S  +    ++           +  +       +D + E 
Sbjct: 450 RMIFHDFKLWMEDIKKRISSDSVLEHLRQMVEDIGYEAYIYEQCDSPAKAQKKMDNVWEL 509

Query: 533 LNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           L +  R        SL +++++L       +    ++ + V++MT+H +KGLE P V+LV
Sbjct: 510 LEWVNRLLNKEPEQSLMDVVNKLILIDILEQSD-ESSSDVVQLMTLHASKGLEFPFVYLV 568

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      +     EE  RL 
Sbjct: 569 GMEEELLPH-----------------------------------RVSIDDDQIEEERRLA 593

Query: 652 YVGMTRASDQLIICKHSNTSNEKK 675
           YVG+TRA   L            +
Sbjct: 594 YVGITRAQKGLCFTLAKQRRRAGE 617


>gi|325916758|ref|ZP_08179012.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537012|gb|EGD08754.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC
           35937]
          Length = 723

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 97/575 (16%), Positives = 189/575 (32%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 149 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 205

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 206 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------TGHVFVVGDDDQAIYGWRGA 255

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 256 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 302

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR     
Sbjct: 303 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYAVER 332

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 333 ARQWVRDGG----------SYGEVAVLYRSNAQSRALEEAL----ISEQLPYRVYGGMRF 378

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 379 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 438

Query: 472 KFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                     +        +  + +L          +    +L     R+ +        
Sbjct: 439 LATQENSLAARARNALAGFLSLVGQLHAETGQMELAERIDHVLMRSGLREHWAKESRGGL 498

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    V++MT
Sbjct: 499 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGVQLMT 558

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 559 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 584

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 585 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 619


>gi|268590557|ref|ZP_06124778.1| exodeoxyribonuclease V, beta subunit [Providencia rettgeri DSM 1131]
 gi|291313944|gb|EFE54397.1| exodeoxyribonuclease V, beta subunit [Providencia rettgeri DSM 1131]
          Length = 1202

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 121/885 (13%), Positives = 265/885 (29%), Gaps = 138/885 (15%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              +  D   +  +    L        +       K     + F+DL+   +  L + +  
Sbjct: 317  VFQSIDELLSQSLTLKDLVIPLAISEVREAITNEKHNRGEMGFDDLLTRLDGALAQ-ESG 375

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             ++   I Q     +IDE QDT   Q+ + + +  +         +   L  +GD KQ+I
Sbjct: 376  KFLAQAISQRFPVAMIDEFQDTDAQQYRIFQRIYREV--------NDSALLFIGDPKQAI 427

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y+F GA+    +  K       T          L  ++RS+ +++  ++ +F   ++   
Sbjct: 428  YAFRGADIFTYIEAKNEVSAHYT----------LETNYRSSQNMVEAINHLFGRCQSPFI 477

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
              +     +       G+             HD +       W    + +         A
Sbjct: 478  FEQIPFQPVNFAKQNSGK----------KLIHDGEVVKALTFWQVEAEGVSVAEYEQATA 527

Query: 347  RRIAYTISNMIGTD-----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             + A  I+  +           + G   +++A DI VLVR R++      L R   N   
Sbjct: 528  SQCAVQIAQYLQGGFQGSSYFDNRGTHTLVEASDITVLVRSRREA----VLIRDALNRLN 583

Query: 402  IS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I  V  ++R  +      +DL+ L + +L+ E +      L + +   +   I  +    
Sbjct: 584  IPSVFQSNRESVFSTPEARDLLWLLQAVLTPEKERVLRSALATGILGLTAKQIDDLNHDE 643

Query: 461  HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
               E + +   ++      +          L  +    +       +L    G ++ +  
Sbjct: 644  KSWEKIVDEFARYGMVWQKR--------GVLPMLRMVMAQRQIAETLLSGADGERRLMDV 695

Query: 521  FGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                    + E L      L  E      L + I+  +      +    ++ + V+I T+
Sbjct: 696  M------HIGELLQEMSLQLEGEHTLTRWLAQQIAHPDHQSDVQQMRLESDKHLVQISTI 749

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE  +V+L    + +   K +       ++             +   N   + + 
Sbjct: 750  HKSKGLEYKIVWLPFASNFLPQSKGLYHDRTDYAV-------------RLDLNDSEENVA 796

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM------------- 684
               +    E  RLLYV +TRA     +         +K +  T   +             
Sbjct: 797  LADEERLAEDLRLLYVALTRAIYHCSVGIAPLIKGNRKKSGETDLHLSALGYVIQKGQAG 856

Query: 685  ------------------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                              V            ++  +S+N            H   T    
Sbjct: 857  DSLLLNDMLAEISNDVIDVAVINQPKSERVLLEQNDSVNLSARAVTRHFNDHWRVTSYSG 916

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
                    + ++    L        N     +      + ++ + +     +  + G  +
Sbjct: 917  LSYGSSHTEAEESVSALQFANSLAPNMDIEASVDVEQQEDESLILTPHQFPKGASPGTFL 976

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSC 843
            H L++ I       ++       +    +  A   +  L +I +   +     ++   + 
Sbjct: 977  HNLMEEIDFSGHVSQEWLSEKLESSGFDIQWAPMLQEWLHAIVQAPLSEDGLCLSALQAQ 1036

Query: 844  DSYSEVSVSGKIN--------------------------CPKKDIIISGRIDQISISQQN 877
            D   E+     I+                            +   I+ G ID     +  
Sbjct: 1037 DQLDEMQFYLPIDSLLSASHLDKITHQYDPLSQRCPPLNFERVQGILKGFIDLTFYWKGK 1096

Query: 878  IFIFEYKTHHHVPQ----EIEHIPY-----THIAQLSIYEKILKD 913
             ++ +YK+++          E +        +  Q  +Y   L  
Sbjct: 1097 FYLLDYKSNYLGKDASFYTQEAMAEAMIDHRYDLQYQLYSLALHR 1141


>gi|148981244|ref|ZP_01816335.1| ATP-dependent DNA helicase Rep [Vibrionales bacterium SWAT-3]
 gi|145960940|gb|EDK26267.1| ATP-dependent DNA helicase Rep [Vibrionales bacterium SWAT-3]
          Length = 672

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 109/680 (16%), Positives = 224/680 (32%), Gaps = 129/680 (18%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +A   +     F       L ++ T ++    +++ +    L   +   +++   +    
Sbjct: 97  KALGLKAGFSLFDDQDQLALLKELTERQIDGDKDLLRA---LMSAISNWKNDM--LTPEQ 151

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              +                  Y++  K    LDF+DLI     LLK       +R +  
Sbjct: 152 AKARAQGEQEQLFAFC---FEMYQKQMKAYNALDFDDLIALPVQLLKTN---QEVRERWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             I ++L+DE QDT+  Q+E++R L  +             L  VGD+ QSIYS+ GA+P
Sbjct: 206 SRIRYLLVDEYQDTNTSQYELVRLLVGE----------RGRLTVVGDDDQSIYSWRGAKP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + ++                  +I+L  ++RST+ IL   + + +   +    S  S   
Sbjct: 256 QNLVLLGEDYPN--------LRLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP 307

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              +                                     +    +    A RI   I 
Sbjct: 308 DGEKL-----------------------------------KVLNAKNEEHEAERITGEI- 331

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                    ++      + KD  VL R    + LI           ++    +       
Sbjct: 332 --------IAHKFLNRTEYKDYAVLYRGNHQSRLIEKAL----MQNRVPYKISGGTSFFA 379

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF 473
              IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++E   + 
Sbjct: 380 RAEIKDIMAYLRVLVNPDDDNAFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFEASFEM 439

Query: 474 ANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
                     +   +    +I  +   A+  +  D    ++                +  
Sbjct: 440 GLEQTLTGRGLENLRRFTDWIVRISDNAERGNTVDAVRALVRDINYEDWLYETSASPKAA 499

Query: 523 NEVIDVLDEFLNFTL-----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
              +  + +  ++ +      N      +L+E++  L       +     + ++V++MT+
Sbjct: 500 EMRMKNVSDLYSWIVADLEGDNYDKEEKTLREVVQRLTLRDMMERGEDDDDADQVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE P V+L+ T   +  H+                                    
Sbjct: 560 HASKGLEFPYVYLMGTEEGILPHQTSVD-------------------------------- 587

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              +   EE  RL+YVG+TRA  +L   K        +  + T    + +  H+D   + 
Sbjct: 588 ---EGNVEEERRLMYVGITRAQKELTFTKCRERRQFGELIKPTQSRFLDELPHDDVEWES 644

Query: 698 IKLTNSINKDEWIAYEWSTH 717
           +K   S  +          +
Sbjct: 645 VKKPQSAEERMEKGQAHIAN 664


>gi|307132967|ref|YP_003884983.1| ATP-dependent DNA helicase UvrD/PcrA [Dickeya dadantii 3937]
 gi|306530496|gb|ADN00427.1| ATP-dependent DNA helicase UvrD/PcrA [Dickeya dadantii 3937]
          Length = 720

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 111/728 (15%), Positives = 224/728 (30%), Gaps = 144/728 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  +   L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTNKAAAEMRHRIDQLLGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D +++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHLDAGLPQDFQILDSEDQLRLLKRLIKALNLDEKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINGKKDEGLRPQHIDSYGNPVEQTWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I        ++IL+DE QDT+ IQ+  IR L  D             +  VGD+ 
Sbjct: 204 PH---ILQHYRDRFSNILVDEFQDTNRIQYAWIRLLAGD----------SAKVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + +    R             + I L  ++RSTA+IL   + + +   +
Sbjct: 251 QSIYGWRGAQVENIQHFLRDF--------SDVTTIRLEQNYRSTANILNAANALIAHNGD 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RLGKN---------------------LW-------TDGIEGEPISLYCAFNELDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR +   I                     +  +L R    + ++            + 
Sbjct: 330 --ARFVVSRIKVWQEAGGAL----------SECAILYRSNAQSRVLEEAL----LQQSLP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD ++  R + ++ DD +F  ++ +P     +  +  +    R  
Sbjct: 374 YRIYGGMRFFERQEIKDALSYLRLMTNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDR 433

Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +             +  Q  ++ +  L         H     ++        
Sbjct: 434 QLTLWQSTRALLQEKVLAGRAAAALQRFLELVDALASDTADLPLHVQTDRVIRDSGLWSM 493

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G +    ++ L+E +  T +   Q+    L  L + L        +    A  + 
Sbjct: 494 YEQEKGEKGQARVENLEELVTATRQFSYQDEDQDLLPLQAFLSHAALEAGEGQADAYQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFVVGMEEGMFPSQMSLDEGG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA  +L +    +     K         + +    
Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLTYAESRRLYGKETYHRPSRFIGELPPE 639

Query: 692 DERVKKIK 699
                +++
Sbjct: 640 CVEEVRLR 647


>gi|115524150|ref|YP_781061.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gi|115518097|gb|ABJ06081.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           BisA53]
          Length = 846

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 104/584 (17%), Positives = 179/584 (30%), Gaps = 145/584 (24%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y+E  K     DF DL++    L ++      +  +      +IL+DE QDT++ Q
Sbjct: 208 LYTLYQERLKILNAADFGDLLLENIRLFREHPD---VLRQYQTRFKYILVDEYQDTNVAQ 264

Query: 193 WEVIRSLTE----------------------------------DFFVGKNTH-SSPRTLF 217
           +  +R L +                                  D   G       P+ + 
Sbjct: 265 YLWLRLLAQAPSQSSLPGSTRQSIASSQDGSPGLDASRRPGDDDRMSGNAAPAPPPKNIC 324

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIY + GAE   +LR +               +I L  ++RST  IL     +
Sbjct: 325 CVGDDDQSIYGWRGAEVDNILRFEHDFP--------GAKVIRLERNYRSTGHILAAASHL 376

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            +  E   G +                                  + ++ + T  +DS  
Sbjct: 377 IAHNEGRLGKTL----------------------------RTEDVDGEKVTVTGAWDSEE 408

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +       AR +   I  +               +  DI +LVR              L 
Sbjct: 409 E-------ARGVGEEIEQLQRQGH----------KLNDIAILVRASFQMREFEDRFVTL- 450

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               +           +   ++D +A  R I S  DDL+F  ++  P     +  +  + 
Sbjct: 451 ---GLPYRVIGGPRFYERAEVRDALAYLRVINSSADDLAFERIVNVPKRGLGDATVQLLH 507

Query: 458 -TQRHETETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
              R     ++E  +        K       + +I             S  D   ++L  
Sbjct: 508 DHGRKRKIPLFEAARAITETDELKPKARGSLRDLITSFERWRAQRDVVSHTDLAQIVLDE 567

Query: 511 KKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
               + +      +     + L E +      E         L   LE     + R   A
Sbjct: 568 SGYTEMWQKDRSADAAGRLENLKELVRSMEEFEN--------LQGFLEHISLVMDREGGA 619

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           + + V +MT+H+AKGLE   VFL      +F H+                          
Sbjct: 620 DEDAVSLMTLHSAKGLEFDSVFLPGWEEGLFPHQR------------------------- 654

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                   +    ++  EE  RL +VG+TRA  +  +   +N  
Sbjct: 655 -------ALDDQGRAGLEEERRLAHVGITRARKRAKLYFATNRR 691


>gi|269955531|ref|YP_003325320.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304212|gb|ACZ29762.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM
           15894]
          Length = 896

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 117/847 (13%), Positives = 244/847 (28%), Gaps = 160/847 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L   +                  + ++ + L   + ++     
Sbjct: 100 GAGSGKTRVLTHRIAYLLATGRARAGEILAITFTNKAAAEMRERVEHLVGPAASRMWVST 159

Query: 66  FSL--------------LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKI 110
           F                L S F        + ++T    + + D K+   +   +    +
Sbjct: 160 FHSACVRILRREYKVLGLRSSFSIYDAADSQRLVTLVTRELNLDPKKYPARGLSNRISDL 219

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           ++   T + +        +   +   Y+   ++   LDF+D+I+ T  LL+       + 
Sbjct: 220 KNELVTPEDYAEQGEKDPVLADVYTRYQARLQQASALDFDDIIMTTVHLLQ---AFPNVA 276

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS------------------- 211
               +   H+L+DE QDT+  Q+ +++ L        +T                     
Sbjct: 277 EHYRRRFRHVLVDEYQDTNHAQYVLVKELVGGVVSTGSTTGGGSTTGGGSTTGGGSTAGG 336

Query: 212 --------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                    P  L  VGD  QSIY+F GA  + +   ++  +          + I L  +
Sbjct: 337 GSTAGGDLEPGELTVVGDADQSIYAFRGATIRNIQEFEQDYR--------DATTILLEQN 388

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL+  + V S   + +                        LW        +   
Sbjct: 389 YRSTQTILSAANAVISRNADRKPKR---------------------LW-------TAAGA 420

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
             +       D           AR +A  I  +         G    ++  D+ +  R  
Sbjct: 421 GARIVGYVADD-------EHQEARFVAEEIDRL---------GDSDGVRPGDVAIFYRTN 464

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +  +         +           +   IKD +A  R + + +DD++   +L  
Sbjct: 465 AQSRSLEEVL----VRVGLPYKVVGGTRFYERREIKDAIAYLRALANPDDDVNLRRVLNV 520

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFA-------NCGISKFQHVIKYIHELIHIAQ 496
           P     E     +          +      A          ++  +     +  L  + +
Sbjct: 521 PKRGLGERAEALVAGLAERERISFGAALDRAEDVPGMSTRTLNPLRGFRDLMRGLRALVE 580

Query: 497 F-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS-SLQELI 551
               P      +L       +  +    +    ++ L E         Q     SL + +
Sbjct: 581 AGEPPAAILGAVLDRTGYLAELRASDDPQDASRVENLAELHAVATEFSQTDPEGSLVDFL 640

Query: 552 SELEQYPPTIKRAHSA------------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +     + +                 +   V +MT+HTAKGLE PVVFL       F 
Sbjct: 641 ERVSLVADSDQIPDEDVADGEAEQEPKVDQGVVTLMTLHTAKGLEFPVVFLTGMEDGTFP 700

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H                                         +   E  RL YVG+TRA 
Sbjct: 701 HMRSLH----------------------------------DDAELAEERRLAYVGITRAR 726

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           ++L + +    S    SN+      + D   +    ++ + +    +    A+  +    
Sbjct: 727 ERLYLSRAGMRSAWGMSNEMPPSRFLTDVPEDLWDWRRKESSTQYLRGGGSAW-GARGSG 785

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                 R  +  +                + I  P   +  +   +  +      ++  +
Sbjct: 786 AYGSGARGSSWGERASSSGSGAGGSGYGPSRIGRPKNASTESTGARFGSATPRTDAEIPS 845

Query: 780 FNRGLII 786
              G  +
Sbjct: 846 LAVGDRV 852


>gi|260494743|ref|ZP_05814873.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_33]
 gi|260197905|gb|EEW95422.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_33]
          Length = 737

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 114/596 (19%), Positives = 195/596 (32%), Gaps = 117/596 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K I+   +  ++  +       +D    I       K              +   Y  A 
Sbjct: 119 KRIVKAILKGQNLSINGVKLTERDLVSMISKIKEQIKTLDEYSVMNKQIVEVYDKYNRAL 178

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            ++  +DF D+++NT  LL+K +    I  K+  +  +I+IDE QDT+ +Q+++I  +  
Sbjct: 179 LESNAMDFSDILLNTYKLLQKSE----ILEKVQNKYKYIMIDEYQDTNNLQYKIIDLIAR 234

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                         L  VGDE QSIY F GA    +L  +               II+L 
Sbjct: 235 ----------KSSNLCVVGDENQSIYGFRGANILNILNFENNYNN--------AKIIKLE 276

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   +++    ++++                        LW          
Sbjct: 277 ENYRSTTTILDAANELIKNNKSSKDKK---------------------LW-------TQN 308

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                    +  ++  + S       RI   I                 I  +D+ +L R
Sbjct: 309 GKGDLIKVLACDNARDEVS-------RIIEIIKENHQNG----------IAYRDMTILYR 351

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L           Y I               IKD++A    I++ +D+L+   ++
Sbjct: 352 TNAQSRLFEEGF----LRYNIPHKVFGGVSFYSRAEIKDIIAYLSIIVNPQDELNLQRII 407

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494
             P     E  I KI    R     + E +            G  K   +   I EL  +
Sbjct: 408 NVPKRKVGEKGIEKIVTYARENNLNLLEALSHIKEISGLTVVGKEKILEMYDIIKELKDL 467

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
           +   +       ++   K        +      I+ +DEF N  L  E  +      L  
Sbjct: 468 SYTETASYIVQTLIDKIKYIDYIKENYNDAEARIENIDEFKNSILELE--NVVGELRLNE 525

Query: 553 ELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            LE     +         + V++MT+H +KGLE P+VFLV   +++F             
Sbjct: 526 YLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGS---------- 575

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                       ++   EE  RL YV +TRA  +L +   
Sbjct: 576 ------------------------RAMFEEKEMEEERRLCYVALTRAEKKLYLSHA 607


>gi|317014893|gb|ADU82329.1| putative ATP-dependent DNA helicase [Helicobacter pylori
           Gambia94/24]
          Length = 681

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 96/572 (16%), Positives = 184/572 (32%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  + ++L+  +    +  +I +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLCLSLEILQDNE---KLAKEISERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKQLS----------CAHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              I++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKIVKLETNYRSSAEILACANSLISHNQHRHIKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  +      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSVEESLNAL----NIPYRLIGAVGFYERAEVKDALAFMHVVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISKFQHVIK 486
                 +L  P     +     I +   E     E       +  K         +    
Sbjct: 388 RFFIKRVLNKPPRGLGKIAQEWIFSLLDEEGLDLEEALKLGVFKDKLNPKNEYALKKFTA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVEKFCERFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +    +    + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESALDVHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQLLQQDKPP 619


>gi|291276509|ref|YP_003516281.1| ATP-dependent DNA helicase [Helicobacter mustelae 12198]
 gi|290963703|emb|CBG39536.1| ATP-dependent DNA helicase [Helicobacter mustelae 12198]
          Length = 712

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 95/563 (16%), Positives = 191/563 (33%), Gaps = 120/563 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y++A  +  ++DF+DLI+    +L++      +  ++ +   +I++DE QDT+ 
Sbjct: 191 AKIYQGYQQALIEQNLIDFDDLILLPYQILEQN---QNLAMEVSRRYAYIMVDEYQDTNF 247

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++  L           S+ + L  VGD+ QSIY + GAE   +L   +        
Sbjct: 248 LQFKLLEKLC----------SAHQNLCVVGDDDQSIYGWRGAEIGNILNFHKFFP----- 292

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RS+ +IL   +++ +  +   G    S           G+   V+L
Sbjct: 293 ---DTKTIRLEENYRSSQEILEASNQLIAHNKQRLGKVLYS---------HKGRGENVEL 340

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                           ++ ++ +A  I +++             
Sbjct: 341 LH--------------------------NPDENLESQVLAKKIQSLLREG---------- 364

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +  +I +L R    +  +        N  KI           +   IKD++A  R++++
Sbjct: 365 ARVDEIAILFRLNALSRALEDGL----NKAKIPYCLIGTIRFYERAEIKDILAYLRYLIN 420

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQH 483
             DD S   ++  P     +     I +  +    +V E           +   +   + 
Sbjct: 421 DRDDFSLERIINQPKRGIGKTTKEAIFSLAKERRISVAEAFSLGLYEGVLSQKILKNLKG 480

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQN 542
               + EL  +     P     + L   + R  +   F GN+ +  + EF         +
Sbjct: 481 FFGTLEELRGL--EMQPERIIGVFLDRFELRNCYEDEFGGNDRLANIQEFQGLLKDYFHH 538

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + + +  L   L   P   +     +H  V+ M++HTAKGLE   VF++           
Sbjct: 539 NPTHI--LQDFLNDIPLESELDMQNDHG-VKCMSIHTAKGLEFDYVFVIGLEEGFTPLLR 595

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YV  TRA  +L
Sbjct: 596 EGV-------------------------------------DMEEERRLTYVAFTRARKKL 618

Query: 663 IICKHSNTSNEKKSNQRTWYDMV 685
            +    +  ++      +    +
Sbjct: 619 FVSYVDSRYHQGIRKPISPSRFL 641


>gi|188579188|ref|YP_001916117.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523640|gb|ACD61585.1| DNA helicase II [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 728

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 97/575 (16%), Positives = 191/575 (33%), Gaps = 120/575 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y+E   ++ +LDF +L++  ++LL+       +   
Sbjct: 154 RRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPA---LLAH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 261 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 307

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR +   
Sbjct: 308 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYMVER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 338 ARQWVRDGG----------SYGELAVLYRSNAQSRALEEAL----ISAQLPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 384 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 443

Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  + +L          +    +L     R+ +        
Sbjct: 444 LCTQQNTLAARARNALATFLSLVGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGL 503

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    +++MT
Sbjct: 504 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGMQLMT 563

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F                                      
Sbjct: 564 LHSAKGLEFPIVFLVGLEDGLFPS----------------------------------AR 589

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +    EE  RL YVG+TRA  +L++C   +  
Sbjct: 590 SLEESGRLEEERRLAYVGITRARQKLVLCYAESRR 624


>gi|319957110|ref|YP_004168373.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511]
 gi|319419514|gb|ADV46624.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511]
          Length = 685

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 106/590 (17%), Positives = 207/590 (35%), Gaps = 122/590 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+E  ++N ++DF+DL++ T  +L++ +    +R +  Q   +I++DE QDT+
Sbjct: 164 AARIYQLYQENIEENNLVDFDDLLMLTYRILEENED---LRKETSQRYQYIMVDEYQDTN 220

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q++++R L  +             L  VGD+ QSIY + GA  + +L   +       
Sbjct: 221 ELQYKLLRQLCSE----------HDNLCVVGDDDQSIYGWRGANIRNILDFHQHFDN--- 267

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +++L  ++RST  IL   + +        G    S           G    V+
Sbjct: 268 -----TKVVKLETNYRSTRPILEAANALIEHNSKRLGKKLVS---------HRGDGPEVE 313

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L   +                            +  AR IA  I  ++            
Sbjct: 314 LLHSLD--------------------------EAHEARNIAQKIKGLLAEG--------- 338

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   +I VL R    +  +        +   +           +   IKD+++  R + 
Sbjct: 339 -VDPDEIAVLYRINALSRSLEEGF----SREGLPFKLIGGMRFYERAEIKDIISYFRVLS 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ-----KFANCGISKFQH 483
           +  DD SF+ ++  P     +  I K+        +++Y+ I+     + A+    K   
Sbjct: 394 NPHDDFSFLRIINKPKRGLGKTSIDKLMRLAHERQQSLYQAIESSSEAELASAVSKKAAK 453

Query: 484 VIKYIHELIHIAQ---FCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRN 539
            +K ++E IH  Q     S ++F          +  +     G E I  +DEF  +   +
Sbjct: 454 TLKTLNETIHELQDEAEKSLYNFVDFFEEKIGLKDFYGSMVDGFERILNIDEFYGYLRDS 513

Query: 540 EQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              +   +L E ++++               + + IM++H AKGLE   ++++    + F
Sbjct: 514 VMKNPELTLDEFLNDISLQSD----QDEVEGDAITIMSIHAAKGLEFEHLYVIGMEEEFF 569

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                             G                           EE  RL YV +TRA
Sbjct: 570 P-------------LLGDGC------------------------NMEEERRLGYVAITRA 592

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
              L +C   +   + +  Q      + ++        K+       K +
Sbjct: 593 KTHLTLCYSDSRFYKGRRKQLEKSRFLGEAGLIQNASLKVTRNAEYKKGD 642


>gi|317179655|dbj|BAJ57443.1| DNA helicase II [Helicobacter pylori F30]
          Length = 681

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 97/572 (16%), Positives = 183/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVGFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIK 486
                 +L  P     +     I +    E   + E ++      K            I 
Sbjct: 388 RFFIRRVLNKPSRGLGKITQEWIFSLLDGEGLNLEEALKLGVFKGKLNPKNEYALNKFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVERFCARFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENGQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVQERSYFGRKISCSPSVFLEEAKLLKQDNPP 619


>gi|149925416|ref|ZP_01913680.1| UvrD/REP helicase [Limnobacter sp. MED105]
 gi|149825533|gb|EDM84741.1| UvrD/REP helicase [Limnobacter sp. MED105]
          Length = 666

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 100/606 (16%), Positives = 200/606 (33%), Gaps = 110/606 (18%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            + ++T         L   YE        +DF+DLI+    LL   D    +R +    +
Sbjct: 151 ALAQATTEDEGQIARLYKSYEATLAAYQAVDFDDLILKPTRLLASNDE---VRNRWQNRL 207

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            ++L+DEVQDT+  Q++++R +                  AVGD+ Q+IY++ GA  + +
Sbjct: 208 RYLLVDEVQDTNACQYDLLRLIAG----------PRAMFTAVGDDDQAIYAWRGATIENL 257

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            +      +          +I+L  ++RST  IL   +++                    
Sbjct: 258 RQLTEDYPQ--------LKVIKLEQNYRSTLRILQAANRLIENNPKLF----------PK 299

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                   G   +   +                               A ++A       
Sbjct: 300 TLWSDHGPGEPIVISPMADDE-------------------------HEAEQVAM------ 328

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               +  +  +R  +  D  +L R      ++    R      KI  + +      +   
Sbjct: 329 ---MLSGHRFERRAKYGDYAILYRSNFQARILEQALR----RQKIPYILSGGQSFFERAE 381

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---- 472
           IKD++A  R +++Q+DD +F+  + +P     +  +  +         +++E + +    
Sbjct: 382 IKDVIAYLRLLVNQDDDPAFIRAVTTPKRGIGQKTLEALGTYAGTRGVSLFEALFETGAE 441

Query: 473 --FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV----I 526
                  +   +    +I++L + AQ     D    +L   K  +    +          
Sbjct: 442 SHLNAGMVDALRTFGTFINKLEYRAQREPARDLLNELLSTIKYEEWLYEQQDERGAQAKW 501

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             + +F+ +     +   S+L +L  ++       ++      + V++ T+H AKGLE P
Sbjct: 502 QNVLDFVKWMGDKGEEEGSTLLDLTQKVALMTMLDRQDDGTRPDAVQLSTLHAAKGLEFP 561

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VFL+     +                D  G                   + L     EE
Sbjct: 562 HVFLIGCEESILPS-----------FGDGEG-------------------RELTDDRLEE 591

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL+YVG+TRA   L I         ++         + +     ++           K
Sbjct: 592 ERRLMYVGVTRAQRSLNITWCRKRKKARELVSCFPSRFIKELQLETDKDLPDDTPKMSPK 651

Query: 707 DEWIAY 712
           D   A 
Sbjct: 652 DRLSAL 657


>gi|7329749|emb|CAB82770.1| DNA helicase II [Prochlorococcus marinus str. PAC2]
          Length = 624

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 178/470 (37%), Gaps = 64/470 (13%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y +A   N  LDF+DL++    LL++ +    IR        H+L+DE QD
Sbjct: 207 RLVAETYRLYRKALAANNALDFDDLLLIPVQLLQQNE---NIRTYWHNRFKHVLVDEYQD 263

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  +     +    + R++F VGD  QSIYSF  A+ + ++  +    K
Sbjct: 264 TNWTQYELIKQLVTNGKDPSSFKDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGK 323

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           ++ +     ++++L  ++RST+ IL   + + S  +        +T              
Sbjct: 324 KSQDNTNDSTLVKLEENYRSTSTILEAANSLISNNKERIDKVLRATR------------- 370

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +    T   D + +       A  + + +  +        + 
Sbjct: 371 ---------------GEGEPIKLTRCDDEIAE-------AEAVIHRLRIL--------DA 400

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ +L R    +  I          + I  +        D   IKDL+A  R
Sbjct: 401 SNPELNWGDMAILYRTNAQSRAIEDSL----VRWSIPYIVVGGLRFYDRREIKDLLAYLR 456

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + +L  P     +  + ++     +    ++      E ++  A     
Sbjct: 457 LLINPSDSVSLLRVLNVPKRGIGKTTVQRLSDAASQLKIPLWEVVNDPEAVRSLAGRSAK 516

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFT 536
                 + I+EL       SP +   L+L       + I+       E    L E +N  
Sbjct: 517 GILIFSELINELQSHLLSSSPAELVQLVLEKSGYLSELIATGTDEAEERRRNLQELVNAA 576

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           L+  E++  ++L+  +S          +    + N V +MT+H++KGLE 
Sbjct: 577 LQYQEESEDANLEGFLSTAALSSDADNKD--TSLNRVTLMTLHSSKGLEF 624


>gi|301167220|emb|CBW26800.1| Rep helicase, a single-stranded DNA-dependent ATPase [Bacteriovorax
           marinus SJ]
          Length = 683

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 104/574 (18%), Positives = 192/574 (33%), Gaps = 118/574 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +  +Y++  K    +DF+D++  T  L         +  +  ++  +I+IDE QDT+ +Q
Sbjct: 175 VYDYYQDKLKFYNAIDFDDILFLTVKLFTDFPE---VAKQYSEQFRYIMIDEYQDTNNLQ 231

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++I  LT          S+   L  VGD+ Q+IYSF GA+   +L  +R+         
Sbjct: 232 FDLITGLT----------STHNNLCVVGDDDQAIYSFRGADITNILSFERMFP------- 274

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +++L  ++RS + IL + +KV     N +  +  S     H            LW 
Sbjct: 275 -GAKVVKLEENYRSVSSILELANKVIKENINRRDKTLWSQRKSSHTPL---------LWS 324

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
              +                             A  I+  IS                  
Sbjct: 325 MANT--------------------------EHEAEVISDEISKHQSNGG----------H 348

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             DI VL R          + R      +I           +   +KDLMA    IL+ +
Sbjct: 349 LGDIAVLYRSNTQAQPFEEVFRM----NQIPYTIIGGQKFYEKKEVKDLMAYLTVILNPK 404

Query: 433 DDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISK---FQHVIKYI 488
           D L    +L  P        + K +     E  ++YE + ++ +   ++    +     I
Sbjct: 405 DQLQLRRILNIPNRGIGSRTLEKYLEKSEQEDISLYEALYRYPDLDPNREKHIRDFTGII 464

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN----EVIDV-LDEFLNFTLRN--EQ 541
            +   +    S  +  + ++      +     + +    E     ++ F+    R     
Sbjct: 465 TKFKEVFDLQSLPEAISKLVEDIGFYEFIDKSYDSAKQVERRRNDVNFFIESAERFVKYN 524

Query: 542 NSYSSLQELISELEQYPPTIKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++++L+  + +L                  NEV +MT H++KGLE   V++V    +  
Sbjct: 525 GAHATLKNFVEKLLLQDNQDTEEDEDDDIRKNEVTMMTFHSSKGLEFDTVYMVGVEEESL 584

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            HK+                                           E  RL YVG+TRA
Sbjct: 585 PHKNT----------------------------------IKNGEDISEERRLCYVGITRA 610

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
             +LI+          K   R     + +   + 
Sbjct: 611 QQKLIMTYCKERKLYGKDTPRFISRFINELDKDG 644


>gi|284931444|gb|ADC31382.1| DNA helicase II [Mycoplasma gallisepticum str. F]
          Length = 751

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 101/665 (15%), Positives = 200/665 (30%), Gaps = 124/665 (18%)

Query: 29  SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT----PQKNI 84
              + + +  +       +     L          ++  L+     +QK+        + 
Sbjct: 86  RTFHGFCAQVLR----EEVNNVDRLNDRFNILDEVDQAKLIEDLLKSQKYEYYYSQYTDF 141

Query: 85  ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
              ++     D K       +      ++     +   T   +         YE+A K+ 
Sbjct: 142 KKNKVMSIINDAKTYNLDVAEFLASDLNKLGEDHIL--TPNLVQPLSNFYHDYEKALKEL 199

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             +DF DL+    +L     +   I  K       IL+DE QD + IQ+++++ L     
Sbjct: 200 NAIDFNDLLNIAYNLFLNDPI---ILKKWQNRYEAILVDEFQDANEIQYKIVKLL----- 251

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                         VGD  QSIY + GA  +     +               +  L  ++
Sbjct: 252 -----REKNNNFLFVGDPDQSIYGWRGANSEIGDSIRFDF--------NDLVVKYLTQNY 298

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS   IL + +    +  +    S  S                                 
Sbjct: 299 RSKQSILNLANDAIKMNNSRYFKSLLSHDLTDLGPKP----------------------- 335

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
               W ++ +   Q        R +   I  ++ +         +     D  +L R   
Sbjct: 336 ---VWINFSNIEYQN-------RFVMDKIKELVAS---------KQYTYGDFAILYRTNF 376

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            +  +  L +      +I       +       IKDL+   + ++   DD++F  ++ +P
Sbjct: 377 SSVSLERLIKE----NRIPYEIFGGYKFFLRKEIKDLIGYLK-LVDTNDDIAFDRIINTP 431

Query: 445 LFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK-----FQHVIKYIHELIHIAQFC 498
                +  I  I      ++ T +E +       I        Q+  K I +L       
Sbjct: 432 RRMIGDTSIEIIKELANKKSITEFEALDYLDESNIKANVKKSAQNFKKMIEDLRANQGNW 491

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS------LQELIS 552
           S +     I+                  D ++EF++F  + E+   +       + + I 
Sbjct: 492 SVYQTINEIIKRINYYDYL---NEPTKHDSVNEFIDFLNKYEREYENGFGTKLTINDFIQ 548

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            L           + N N +++MT+H+AKGLE   VF+++    +               
Sbjct: 549 NLALEGDLDNNQPNHNKNALKLMTIHSAKGLEFKNVFIINMNENILPSSRS--------- 599

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                 +     K+   E  R++YV  TRA   L +C + +   
Sbjct: 600 ----------------------IAASNNKAKLAEERRIVYVAYTRAKHNLWLCSNQDYDA 637

Query: 673 EKKSN 677
             K  
Sbjct: 638 RTKEP 642


>gi|242237694|ref|YP_002985875.1| DNA-dependent helicase II [Dickeya dadantii Ech703]
 gi|242129751|gb|ACS84053.1| DNA helicase II [Dickeya dadantii Ech703]
          Length = 720

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 115/728 (15%), Positives = 223/728 (30%), Gaps = 144/728 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  +   L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTNKAAAEMRHRIDQLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D +++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHLDAGLPQDFQILDSEDQLRLLKRLIKALNLDEKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +    + +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINGKKDEGLRPHHIDSYGNPVEQTWLRVYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I         +IL+DE QDT+ IQ+  IR L  D             +  VGD+ 
Sbjct: 204 PH---ILQHYRDRFTNILVDEFQDTNRIQYAWIRLLAGD----------SARVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + +    R  Q+           I L  ++RSTA IL   + + +   +
Sbjct: 251 QSIYGWRGAQVENIQHFLRDFQQ--------VETIRLEQNYRSTATILNAANALIAHNGD 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RLGKN---------------------LW-------TDGVEGEPISLYCAFNELDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR +   I                     +  +L R    + ++            + 
Sbjct: 330 --ARFVVNRIKVWQDAGGALI----------ECAILYRSNAQSRVLEEAL----LQQNLP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD ++  R I ++ DD +F  ++ +P     +  +  +    R  
Sbjct: 374 YRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDR 433

Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +             S  Q  ++ +  L         H      +        
Sbjct: 434 QLTLWQATRALLQEKVLAGRAASALQRFLELVDALASDTADLPLHVQTDRAIRDSGLWGM 493

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G +    ++ L+E +  T +   Q     L  L + L        +    A  + 
Sbjct: 494 YEQEKGEKGQARVENLEELVTATRQFSYQEEDQDLMPLQAFLSHAALEAGEGQADAYQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVG+TRA  +L +    +     K N       + +    
Sbjct: 591 -----------RLEEERRLAYVGVTRAMHKLTLTYAESRRLYGKENYHRPSRFIGELPPE 639

Query: 692 DERVKKIK 699
                +++
Sbjct: 640 CVEEVRLR 647


>gi|113868708|ref|YP_727197.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16]
 gi|113527484|emb|CAJ93829.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16]
          Length = 782

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 108/671 (16%), Positives = 202/671 (30%), Gaps = 144/671 (21%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K  Q      +++       ++          L A Y+   ++  V+DF +L++   +LL
Sbjct: 138 KNLQYFINNAKEQGLRPADVEANDDFNKRFVDLYAAYDLQCQREGVVDFAELLLRCYELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  D    IR        H+L+DE QDT+++Q++ ++ L            +P  +FAVG
Sbjct: 198 RYNDA---IRQHYQHRFRHVLVDEFQDTNVLQYQWLKLLAGYGT------QNPAAVFAVG 248

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   +   + R         +I+L  ++RS   IL   + + S 
Sbjct: 249 DDDQSIYAFRGANVGNMRDFEHEFRVR--------RLIKLEQNYRSHGHILDSANHLISH 300

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +  +           G    V+++                          Q  
Sbjct: 301 NARRLGKNLRTD---------AGHGEPVRVF--------------------------QGG 325

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           S    A  I   I + I                 +I +L R    + +I           
Sbjct: 326 SDGQEAAWIIEEIRDQIAQG----------ASRAEIAILYRSNAQSRVIEHAL----FSA 371

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQ 459
            I+          +   IK  +A  + + +  +D +F  ++  P        +  +    
Sbjct: 372 GIAYRVYGGLRFFERAEIKHALAYMQLLENPRNDAAFGRVVNFPARGIGARSLEVLQDMA 431

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R     + E +        SK     + I +     +  +  +    ++        +  
Sbjct: 432 RQYDCALAEAVAYVPGAAGSKLAAFTRLIEKTREDTRRMTLAETVEYVINHSGLITHYQG 491

Query: 520 RF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-------------------------- 552
              G + I+ L E +             L+ L +                          
Sbjct: 492 EKEGQDRIENLQELVTAAQAFVVEEGYGLEALAAVIPVDRSPAAPALADGDQAQQVLDPE 551

Query: 553 -----------ELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                       L             A  + V++MTVH AKGLE  VVF+      +F H
Sbjct: 552 ALPVVMTPLVAFLTHASLEAGDNQAQAGQDAVQMMTVHAAKGLEFDVVFITGMEEGLFPH 611

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           ++                                    +     EE  RL+YV +TRA  
Sbjct: 612 ENS----------------------------------MMDPDGVEEERRLMYVAITRARK 637

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L +      +  +  + +T Y +    F          LT        +  +       
Sbjct: 638 RLYMS----FAQSRMLHGQTRYHVRSRFFEELPEASLKWLTPPAQGYGGVRRQERDSAWG 693

Query: 721 NTPLEREETIK 731
                + E + 
Sbjct: 694 RDWFRKPEDVP 704


>gi|330432051|gb|AEC17110.1| DNA-dependent helicase II [Gallibacterium anatis UMN179]
          Length = 721

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 87/525 (16%), Positives = 181/525 (34%), Gaps = 83/525 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A  +  ++DF +L++ T +L +K+ +   I  +  Q  +HIL+DE QDT+ I
Sbjct: 174 EIYKIYQDACDRAGLVDFAELLLRTYELWQKKPL---ILQRYQQRFHHILVDEFQDTNNI 230

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E ++ L  +             +  VGD+ QSIY + GA+   + R            
Sbjct: 231 QYEWVKLLAGN----------SANVMIVGDDDQSIYGWRGAKIDNIYRFLTDYH------ 274

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +  E   G +                     LW
Sbjct: 275 ---AETIRLEQNYRSTENILQAANILIANNEGRLGKN---------------------LW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                F+   +       AR +   I   +              
Sbjct: 311 -------TEGNKGDPVGIYRAFNEHDE-------ARFVTSQIKQWVDEGG---------- 346

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 VL R  + + ++            +           +   IKD +   R + ++
Sbjct: 347 NYDQCAVLYRSNRQSRILEEAF----LQSGLPYRIYGGLRFFERQEIKDALGYLRLLANR 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484
           +DD++F  ++ +P     +  +  +    R  T T+++                S     
Sbjct: 403 QDDVAFERVVNTPTRGIGDRTLEILRDIARKRTLTLWQATHLALEEKLVQGRAASALLRF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ 541
           I+ I+ L +        +    ++     ++ +    G +    ++ LDE +      ++
Sbjct: 463 IELINALDNDTFELPLAEQTEFVIEHSGLKEMYQKEKGEKGEVRLENLDELVFAARDFQK 522

Query: 542 -NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +    + +LI+ L        +   S +   V +MT+H++KGLE   VF+V     +F 
Sbjct: 523 PDEAEEMSDLIAFLTHASLEAGEGQASPHQQCVDLMTLHSSKGLEFDRVFIVGMEEGLFP 582

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
                +   +        + I   + K           + ++  +
Sbjct: 583 SGASGEEGRIEEERRLAYVGITRARKKLTLCYAEQRRVYSQEEKR 627


>gi|325847046|ref|ZP_08169872.1| putative ATP-dependent nuclease subunit A [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481018|gb|EGC84063.1| putative ATP-dependent nuclease subunit A [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1021

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 143/812 (17%), Positives = 270/812 (33%), Gaps = 114/812 (14%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLL------SSFFLTQKFTPQKNIITQEINKKSPDLKE 98
             L     L+++      ++            + F  +K  P +++  +       D   
Sbjct: 243 EDLSYFYKLKKSVIEDEWDDSLEKFDYNLKAKTRFNKKKDDPNEDLFVKTKRNYYKDQFT 302

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +LK        I   F   K  +       L       Y+  K++   LDF D+      
Sbjct: 303 ELKNIVVNTDSITKAFFDPKEEEVLAELKNLVFEFEKIYKNKKREENYLDFSDMEHEFIK 362

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL+  D    +  K+ ++  +I  DE QD++ IQ  ++  L            +   LF 
Sbjct: 363 LLENDD----LVEKLQKQFKYIFFDEYQDSNDIQNYIVDKL-----------KNKNNLFF 407

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD KQSIY F  A P+  L +    +K           I L  +FR+  D++   + +F
Sbjct: 408 VGDVKQSIYGFRNARPELFLEKLESYEKD-----PNSVRINLSKNFRTDKDLIDFNNYIF 462

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                 +  S+ S     HR +                  +       ++  S  +    
Sbjct: 463 DRLMTKKN-SDISYKDDNHRLNYH------------FEFDEKYPKVSIKALNSSINEE-- 507

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                     +   I ++I +           +  KDI +L+R      LI    +    
Sbjct: 508 --------EYLIKEIDDLINSG----------MSYKDIAILLRSSSKAYLIENELK---- 545

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I    +   I  + + +   + + ++I + +DD + + +L+S +FNFSED++  I  
Sbjct: 546 KAGIPFSSDISKISFETVEVDFFINILKYIANPKDDFTLLSVLRSEIFNFSEDELSLISL 605

Query: 459 QRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
              +    E    Y + F +    K         +  +I  F + +DF  +I        
Sbjct: 606 SSDKKFFYEKFSLYEENFDDELSQKVSDFNTSFADFSYILNFSNMYDFANIIFEKSGYYD 665

Query: 516 QFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSAN 568
              +R  G E +  ++ F+      ++N+ +SL   ++ ++      +      R  S  
Sbjct: 666 FLKARDRGYERVQNIEAFIELMDDYDKNNENSLFGFLTYIDNLKNQNKDNLKASRNLSDE 725

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + VRIMT+H +KGLE   V L +      +    K M +   L     I  W  + K  
Sbjct: 726 EDLVRIMTIHKSKGLEFKAVILPEASKGFNTRGKSKDMLLDKDLGIGINISDWDNKIKIS 785

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           +     +++ L  + ++E  R+LYV +TRA  +L I    + + +      +   ++  S
Sbjct: 786 SIKRDLILEKLNLNDKKEEMRVLYVALTRAERKLSIIGQKDLNEKGLDKIISSDSILDLS 845

Query: 689 FHNDERVK--------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD----- 735
            + D  +K           +      D +        + E      E     + D     
Sbjct: 846 SYMDWILKILSEDKIMADFIDLDYKTDNFRNGAVKIDYIEEFNANTELDFTDVKDILDGK 905

Query: 736 ------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGK---------------------- 767
                  + I        +N  N    L  S  +                          
Sbjct: 906 NYDEKIYKNIKDIFSYSYENLENTNKSLKKSVTEIAKNYDLSNNGYEKSSFDDVEISHDF 965

Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                         +G +IHK+ Q +      
Sbjct: 966 RRPNFDQISLSPTQKGTLIHKIFQELEFKEYD 997


>gi|282163632|ref|YP_003356017.1| putative ATP-dependent DNA helicase [Methanocella paludicola SANAE]
 gi|282155946|dbj|BAI61034.1| putative ATP-dependent DNA helicase [Methanocella paludicola SANAE]
          Length = 1087

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 137/911 (15%), Positives = 264/911 (28%), Gaps = 166/911 (18%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH---- 136
           +      E    + DL +++ K+      +     T  + +         +    H    
Sbjct: 169 RLKAQLDEYAPGASDLADEVSKATVRINTMHLEPPTKALREEKNFLTAFIEAYEEHEKYT 228

Query: 137 --------YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
                   YE+ K +  +LD+ D+I             AW    + +  +++++DE QDT
Sbjct: 229 AFLEAWKGYEKLKSEKKMLDYADMIKMVI-----DYCQAWGDDALAELYDYVIVDEFQDT 283

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+++++ L                + AVGDE Q+IY+F GA P+ +       +   
Sbjct: 284 NRQQFKLLKILASKC----------GDITAVGDENQAIYAFRGAYPENIGEFTIDFKADV 333

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
            N         L  ++RST  IL    ++           +D   T   +S+   +   V
Sbjct: 334 KN---------LTENYRSTNAILRTAHRLIVNN------YDDPEETKLLKSALGVEGDKV 378

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L      +                            ARR+   I  ++  D        
Sbjct: 379 KLIRTSNPKE--------------------------QARRVIEEIERIVEDD-------- 404

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             I    I VL R       +            I               ++  +A    I
Sbjct: 405 --IDFNRIAVLFRSHSSANAVQSAFES----RSIPFQLISNNGFLKRPEVRTALAYLYVI 458

Query: 429 LSQEDDLS----FVCMLKSPLFNFSEDDIFKICTQRH----ETETVYEYIQKFANCGISK 480
            + ED           L    +  +  D   +         +   + +     +  G  K
Sbjct: 459 ANLEDPRYGADQMWWKLLHYKYGLTMKDSHILAKAAKRDTIQNVLLGKLPDALSWDGKKK 518

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537
              ++  I EL       S  +    +  A    ++               L    +   
Sbjct: 519 INSLLAKIEELRKNKNK-SLSNLLLDVYEASGLSRELSHESTRTSRIWMLNLRYLHDLVA 577

Query: 538 RNEQNSYSSLQELISE---LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             E    + L   I     L++    +          V +MT H AKGLE   VF+VD  
Sbjct: 578 GFEDFYGADLAGFIEYMRMLDELGEDLDAPTLKEAQGVVLMTCHGAKGLEYDYVFIVDLA 637

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              F      +  ++P   +D    I+  + +S   +   L    ++   +E  RL YV 
Sbjct: 638 KDKFPITAGGRAPLLPDELNDRFRDIFEAEWESDKELDEALKARKRELRLKEERRLAYVA 697

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            TRA  +L +C   +    ++S      +  ++     + ++ I+       +       
Sbjct: 698 YTRAKKELYLCHPQSYGENERSPSMFIAESCFEDNSVHDDIELIQDDEVKVGEMAKDGAL 757

Query: 715 STH---------------------------------HPENTPLEREETIKQLMDEQKIPK 741
                                                P   P          +  + I  
Sbjct: 758 DKKKDEIKRLVLSTIDSEPQLALYNLLLYQGLCCHNLPSGIPEAARAREDAALIMKDIGD 817

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD--------------NQTFNRGLIIH 787
                +K D  E  +L+ S++        +  L+                     G  +H
Sbjct: 818 GTPLGLKFDPEE-VVLSHSSLKIYRDCPKKFELARLLRMPSRYDDEEEGEGALGFGTFVH 876

Query: 788 KLLQVIFTLPEHKRKN----FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
           + L++        R+               K    K  K +  +           T +  
Sbjct: 877 EALELAAKNKVKSRQELDDIAAELLKEPGYKDIDVKRAKVIFDTFWA-----RNRTKLGN 931

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISI--SQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
              +E + S ++         SG+ID++        + I +YKT     +E         
Sbjct: 932 VVMTEQAFSFEL----GGFRFSGKIDRVDELNGNGEVEIIDYKTGREPSKEDRE------ 981

Query: 902 AQLSIYEKILK 912
           +QL +Y+   +
Sbjct: 982 SQLLLYKLAFE 992


>gi|154499859|ref|ZP_02037897.1| hypothetical protein BACCAP_03516 [Bacteroides capillosus ATCC
           29799]
 gi|150271457|gb|EDM98714.1| hypothetical protein BACCAP_03516 [Bacteroides capillosus ATCC
           29799]
          Length = 830

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 127/730 (17%), Positives = 230/730 (31%), Gaps = 131/730 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + L P      +       + +   +   L  +++               
Sbjct: 134 AAGELKERLERMLGPSANDIWASTFHSACVRILRRDIDRLGFSKSFTIYDTADAERVIKD 193

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           ++  F L  K  P K+I+             + K +                ++      
Sbjct: 194 IIKDFNLDDKAFPAKSIV---------GYISRAKDAMKLGADYLAECEKSGDYRLIK--- 241

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   YE+  +    LDF+D+I++T  LLK+ D    +R    ++  ++LIDE QD
Sbjct: 242 --IAKVYVEYEKRLRDANALDFDDIILHTVRLLKEFDE---VREYYQRKFRYVLIDEYQD 296

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+ +  +L   +            +  VGD+ QSIY F GA  + +L  +      
Sbjct: 297 TNNLQYLLASTLAGGYE----------NICVVGDDDQSIYRFRGATIENILSFESQY--- 343

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   +I L  ++RST +IL   + V    E  +G                     
Sbjct: 344 -----KGARVIRLEQNYRSTKNILEASNAVIRNNEGRKGK-------------------- 378

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +LW       D     + + +T+  +           A+ +A  I              
Sbjct: 379 -ELW------TDHGEGDKVQCYTAMNEHDE--------AQYVAAQILGSFSAGR------ 417

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    +  I    +       +           D   IKD++A    
Sbjct: 418 ----HWKDHAVLYRMNAQSNQIEQAFK----RNGVPYRIIGGIRFFDRAEIKDMLAYLCV 469

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE-----YIQKFANCGISKF 481
           I +  DDL    ++ +P        I +  T    E  +++E      +        +K 
Sbjct: 470 INNPGDDLRLQRIINNPPRGIGATTIERAQTIAAQEGRSLWEIISNARVYPELQKAAAKL 529

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
                 I EL  ++       F+  ++           +   E    ++ + E L     
Sbjct: 530 ASFTDMIAELRKLSGEMELPAFYEELVARTGYAVMLEQKNTIEDRTRLENVQELLTSING 589

Query: 539 N-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E     SL   + E+  Y            + V +MT+H+AKGLE PVVF+V     +
Sbjct: 590 YLENAVEPSLAGFLDEIALYTDLDSHDPEE--DCVVMMTMHSAKGLEFPVVFVVGVEEGI 647

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                    +    +    EE  RL YV MTR
Sbjct: 648 FPG----------------------------------IRAIGEAEEMEEERRLCYVAMTR 673

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMV-YDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           A ++L +   S      ++N       +        E+  ++  +    + +        
Sbjct: 674 AKEKLYMTCASQRMLFGRTNNNRPSRFLGEIPEEYVEKSGRLPRSERTEEKQDGEQPKKK 733

Query: 717 HHPENTPLER 726
                 P ER
Sbjct: 734 APAWRKPAER 743


>gi|119945195|ref|YP_942875.1| exodeoxyribonuclease V, beta subunit [Psychromonas ingrahamii 37]
 gi|119863799|gb|ABM03276.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Psychromonas
            ingrahamii 37]
          Length = 1226

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 138/941 (14%), Positives = 294/941 (31%), Gaps = 141/941 (14%)

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             +++L SS  L+   +  K    + +++K+P  +        E   +        +    
Sbjct: 280  SQWALTSSASLSLPKSLVK-FSQKTLDEKTPKGEIPTHPVFSEIEALL----ALDLSLEN 334

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               +    ++ AH +  K K  +L F+DL+   +  L+  +  +     I       LID
Sbjct: 335  TILVKATHWVQAHLQSNKNKQMLLGFDDLLTRLDAALQNGNEKSLALN-IRTAYPIALID 393

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            E QDT  +Q+ +  ++ +      +        LF +GD KQ+IYSF GA+    ++ ++
Sbjct: 394  EFQDTDPVQYRIFTTIYQSLEGEDSEPLDKSLGLFMIGDPKQAIYSFRGADIFTYMKARQ 453

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                  +          L  ++RST +++   +  F         ++D   +      + 
Sbjct: 454  NVSAHYS----------LDYNYRSTPEMIDASNTFFEFCPAPFIYNDDIPFSAVQAPDKR 503

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI----- 357
             +   V+        +          +         +     +       I  ++     
Sbjct: 504  RKKLVVE--------NKDDPAQSALQFIHPVGGENSQGFKDSITHACINEIKKILLLAQQ 555

Query: 358  GTDTIFSNGKKRVI-QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                +     KR I +A  I VLVR  K+  LI      L N+   SV  + +  +    
Sbjct: 556  DKAYLEDKKGKRSIIRANHIAVLVRTGKEAQLIRN---ALFNENINSVYLSLKESVYATS 612

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
              KDL+ + +  L+ E++      +   LF  +   + +I         ++E        
Sbjct: 613  HAKDLLRILQACLNPENERLLRAAIACKLFCQTPYQVHQILL----NTRLWEEKIGQFIE 668

Query: 477  GISKFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
               +++ V  +  +H+L H             +L   +G +             L E L 
Sbjct: 669  YRRQWRSVGILAMLHKLFHQQ------AISAYLLKDTQGERLLTDVL------HLAELLQ 716

Query: 535  FTLRNEQNSYSSLQELISEL---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                +    ++ L+    ++          K+   +  + V++ T+H AKGL+  +VF+ 
Sbjct: 717  KNSVDHDGEFALLRWFGEQIKQGNSGESEQKQRLESEKDLVQVSTLHKAKGLQYDIVFMP 776

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
             TG              +    D     I+  Q+   N  +++      K    E  RLL
Sbjct: 777  FTGLYQKPQA------CLYHDPDQNNALIFDLQNTKNNAALAE------KEQLAEDLRLL 824

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---------------VYDSFHNDERVK 696
            YVG+TR+  +  I   +     +K++      +                       +++ 
Sbjct: 825  YVGLTRSVYRCYIGIGNYKKGREKNSPLCKSALGYICLQAGKGLLAGDTEQLNKQLQKMA 884

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS----------- 745
               L  SI     +          + PL+    + + ++         S           
Sbjct: 885  DNSLNISIRPTPLLDETHYQARQSDQPLQAPLVLGKQVERNWWISSYSSLSRFHTQTNTQ 944

Query: 746  -----PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV--IFTLPE 798
                 P    I+               +  ++  S  +    G  +H+L ++  +  +  
Sbjct: 945  VASVTPTVMPIDNISNEQTEVSPAILTSPEKTPFSFPRGAKHGTFLHELFELTNLENMET 1004

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-------MMTTAMSCDSYSEVSV 851
                  +           P      L   I ++L +         +    +     E+  
Sbjct: 1005 ETLNELLFEQLLLRHYPDPELWAPVLTAWIEQILGHDLAAGADIKLGDLSAQQKKIEMQF 1064

Query: 852  -------------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
                                     +G++        + G ID         ++ +YK++
Sbjct: 1065 FIPMQELQANEVNNLLKKYDPLSARAGELQFRTVQGFLKGFIDLTFEKNGQYYVLDYKSN 1124

Query: 887  HH---------VPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            H             E   I + +  Q  +Y   L     ++
Sbjct: 1125 HLGDCLQDYNQTSMEQALIEHRYDFQYQLYTLALHRLLKSR 1165


>gi|33151764|ref|NP_873117.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
 gi|33147985|gb|AAP95506.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
          Length = 672

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 105/630 (16%), Positives = 212/630 (33%), Gaps = 123/630 (19%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS--LTLAKYLNAHYEEAKKKNCV 146
           + +K  + K+ LK    +    ++   + +M  +   S    +       Y+   K    
Sbjct: 121 LPEKVTEDKDLLKALMSQISYWKNDLLSPEMVINHCHSERDRIFSNFYQLYQNQLKAYNA 180

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LDF+DLI+    L ++      ++ +  Q+I ++L+DE QDT+  Q+E+I+ +       
Sbjct: 181 LDFDDLIMLPVLLFRQYPE---VKARWQQKIRYLLVDEYQDTNTSQYELIKLIVGQ---- 233

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                       VGD+ QSIYS+ GA+P+ + R +              ++I+L  ++RS
Sbjct: 234 ------NGHFTVVGDDDQSIYSWRGAKPENMQRLRDDF---------DLNVIKLEQNYRS 278

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           +  IL   + +    ++       ST     + +                          
Sbjct: 279 SQRILHSANILIDNNDHLFQKRLFSTLAEGEKLN-------------------------- 312

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                    + +  +    A R+            + ++      Q KD  +L R    +
Sbjct: 313 ---------VIEAKNEEHEAERVV---------GELIAHRFANKTQYKDYAILYRGNHQS 354

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            L+           +I    +        + IKD+MA  R I++Q DD +F+ ++ +P  
Sbjct: 355 RLLEKTL----MQNRIPYKISGGTSFFARVEIKDMMAYLRLIVNQNDDAAFLRIVNTPKR 410

Query: 447 NFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
                 + K+    +E           +E IQ+         Q+   +I  +   A+   
Sbjct: 411 EIGAATLEKLGQLANEKHISLFDTIFDFELIQRITPKAYQALQNFANWIVMIADQAERAD 470

Query: 500 PHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRN----EQNSYSSLQEL 550
           P +    +L   +                     +     +        E N   +L ++
Sbjct: 471 PLEAVKQLLANIQYEAYLYEHATTPKAAEMQSRNVQTLFEWVQNMLEGDELNEPMNLIQV 530

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           ++ L       +       ++V++MT+H +KGLE P VFL+     +  H+         
Sbjct: 531 VNRLTLRDMLERGEDDDEADQVQLMTLHASKGLEFPHVFLIGMEEGILPHQTSID----- 585

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                         +   EE  RL YVG+TRA   L        
Sbjct: 586 ------------------------------EDNVEEERRLAYVGITRAQQTLTFSLCKER 615

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
               +  +      + +   ++   ++ + 
Sbjct: 616 RQYGEIIKPEASRFLMELPQDNLVWERDRP 645


>gi|312963039|ref|ZP_07777525.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6]
 gi|311282808|gb|EFQ61403.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6]
          Length = 1224

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 144/1047 (13%), Positives = 287/1047 (27%), Gaps = 166/1047 (15%)

Query: 11   ESYELIY--KDLWPLPYFQVSDINKYVSLSMETGNPTILKKA-----QTLQQASQTQCIE 63
            E  E +   K  W     ++ DI      +       +  +      + +   +  + +E
Sbjct: 224  ERREALINIKAPWQQWAAELRDICLQAVAAKAVDGRKMQARYFEPWFEKISLWAADETLE 283

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
                      LT     +     +    + P +      +        D   T       
Sbjct: 284  HLDIGTGFSRLTPDGMAEAW---KGDPPQHPGI-----DAMARLKASLDALPTPDAA--- 332

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                  A ++   +EE K++   + F+D++   N  L+  D    +   I ++    LID
Sbjct: 333  -VLQHAAGWVGKRFEEEKRRRAEMGFDDMLTRLNAALQA-DGGERLASVIREQFPVALID 390

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT  +Q+ +  S+        + +     LF +GD KQ+IY+F GA+    LR ++ 
Sbjct: 391  EFQDTDPVQYSIFDSIYR-----IDENHLDSGLFLIGDPKQAIYAFRGADIYTYLRARK- 444

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG----LSEDSTTTIRHRS 299
                            L  +FRS+  ++  V+ VF   E  +G       +    +  + 
Sbjct: 445  --------STLGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAFLFRESNGDNPVPFQP 496

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIG 358
                         +   Q D Q  P    W    D  +        LA   A  I  ++ 
Sbjct: 497  VLSQG-------RKEQLQVDGQTLPAMNLWHLPTDQPVSNAVYRQQLASACATQIVELLN 549

Query: 359  TDTIFSNGK------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                   G        R +   DI +LVR  K+   +             SV  +D+  +
Sbjct: 550  GGQQGKAGFRQPDNSFRGVLPSDIAILVRDGKEAQAVRAELAA---RGVRSVYLSDKDSV 606

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                   DL+A  +     + +      L     + S  ++ ++     E       +Q 
Sbjct: 607  FAAQEAHDLLAWLKACAEPDVERPLRAALACVTLDLSLPELERLNQ--DELAWESRVMQF 664

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                 I + Q V+  +  L               ++    G +   +         L E 
Sbjct: 665  RGYRVIWRTQGVLPMLRRL------LHDFKLPQTLIARSDGERVLTNLL------HLSEL 712

Query: 533  LNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            L           + ++ L   L               ++   V+++T+H +KGLE  +VF
Sbjct: 713  LQQAASELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVF 772

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L    S          +H                +S+      ++LI         E  R
Sbjct: 773  LPFICSAKPVDGSRLPLHYHDEHG----------KSQVSLRPTAELIAQADDERLAEDLR 822

Query: 650  LLYVGMTRASDQLIICKHSNTSNE----------------KKSNQRTWYDMVYDSFHNDE 693
            L YV +TRA     +                           ++      + +      +
Sbjct: 823  LFYVALTRAKHACWLGVADLKRGNTHSSVLHLSALGYLLGGGASLGEPAGLAHWLQDLQQ 882

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                I   +     + + +          PL  +    +                +  N 
Sbjct: 883  GCPAIHYAHVPEAQDSVFHPPRNQATLLAPLLPKRKAAENWWIASYSALRIGDSMSVANL 942

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFN------------RGLIIHKLLQVIFTLPEHKR 801
                +P          L+         +             G  +H LL+       +  
Sbjct: 943  EAPESPQAQKLFDDERLDPDAPREVAASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFNAT 1002

Query: 802  KNFITSYC-TKNAKLWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVS 852
               I +    +  +         L   +  LL+ P+        +++        E   +
Sbjct: 1003 PQAIENAVGARCNRRNWEGWINTLSGWLGHLLQAPLPVDNAQVALSSLQRYQVEMEFWFA 1062

Query: 853  -----------------------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
                                           + +  G ID         ++ +YK++   
Sbjct: 1063 SHKVDVLALDKLVCQYTHHGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLG 1122

Query: 890  PQEIEHIPY---------THIAQLSIYEKILKDSYP--------NKSLVCLLI-YVSE-- 929
            P +  +             +  Q  +Y   L             ++ +   L  ++    
Sbjct: 1123 PDDSAYTMEAMEQSILEHRYDLQYVLYLLALHRQLKARLPDYDYDRHIGGALYVFLRGSQ 1182

Query: 930  ----PKVFIIPQNKLNKAFAEISTKIP 952
                   F  P  +L +    +    P
Sbjct: 1183 SASRGAYFTRPPRELIEGLDLLFQGKP 1209


>gi|16272592|ref|NP_438809.1| ATP-dependent DNA helicase [Haemophilus influenzae Rd KW20]
 gi|1172905|sp|P44804|REP_HAEIN RecName: Full=ATP-dependent DNA helicase rep
 gi|1573648|gb|AAC22309.1| ATP-dependent DNA helicase (rep) [Haemophilus influenzae Rd KW20]
          Length = 670

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 118/644 (18%), Positives = 224/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RTYNALDFDDLIMLPTLLFKQNEE---VRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 D----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGKGEKLLVIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  +++E I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L A    +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSAIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|329890022|ref|ZP_08268365.1| DNA helicase II [Brevundimonas diminuta ATCC 11568]
 gi|328845323|gb|EGF94887.1| DNA helicase II [Brevundimonas diminuta ATCC 11568]
          Length = 778

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 123/669 (18%), Positives = 207/669 (30%), Gaps = 129/669 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+         DF DL+++   +L K    A +  +  +   +IL+DE QDT++ 
Sbjct: 192 ALYAAYQARLATLNACDFGDLLLHNITILSKH---ADLAEEYRRRFRYILVDEYQDTNVA 248

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R LT          SS   +  VGD+ QSIY + GAE   +LR +R         
Sbjct: 249 QYLWLRLLT----------SSTGNVCCVGDDDQSIYGWRGAEVDNILRFERDFP------ 292

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL     + +  ++  G +                     LW
Sbjct: 293 --GAKVIRLERNYRSTKHILGAASALIAANQDRLGKT---------------------LW 329

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
            +  S    +     +                  AR IA  I                 +
Sbjct: 330 TEDDSGDKVRVRGVWDG--------------EAEARLIADEIETARKQG----------M 365

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             KD+ VLVR              L     I  V        +   I+D  A  R I S+
Sbjct: 366 NYKDMAVLVRASFQMRAFEERFLMLA----IPYVVIGGPRFFERAEIRDAHAYLRLIQSE 421

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQ------KFANCGISKFQHV 484
           +DDL+F  ++  P     +  + K +   R    +    ++      +      +   + 
Sbjct: 422 DDDLAFERIVNVPKRGIGDTSVQKILHIARENGVSAMRAVRHLITTDELQARTRTPLANF 481

Query: 485 IKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQ 541
           ++ +      +A   S       +L          +    G   +D L E        E 
Sbjct: 482 VRDLDRWRDLMAMGTSHWQVTETLLDESGYTAMQKADRTSGQTRLDNLKELTQSMQSFE- 540

Query: 542 NSYSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               +LQ  +  +        +  ++     V+IMT+H AKGLE P+VFL      VF  
Sbjct: 541 ----TLQAYLEHVSLVMDLERRDENADGSGSVQIMTLHGAKGLEFPLVFLPGWEEGVFPS 596

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                  I        EE  RL YVG+TRA  
Sbjct: 597 QRS--------------------------------IDEKGVKGLEEERRLAYVGVTRAKQ 624

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
              I   +N     +   +     V +        +        +     A       P 
Sbjct: 625 DARISFAANRMVYGRWTSQLPSRFVDELPIAHVEPQSDTGYYGASTGMKEAKSRWDDAPS 684

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
                               K+  +       +P     + I+ +G+    +       +
Sbjct: 685 FG----------GSYSSPGWKRAQTYTAAQTPKPAYARRAVIEGEGRLIATADPKAASGW 734

Query: 781 NRG-LIIHK 788
           +RG  + H+
Sbjct: 735 SRGDRVFHQ 743


>gi|288925108|ref|ZP_06419044.1| ATP-dependent DNA helicase PcrA [Prevotella buccae D17]
 gi|288338298|gb|EFC76648.1| ATP-dependent DNA helicase PcrA [Prevotella buccae D17]
          Length = 819

 Score =  267 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 105/693 (15%), Positives = 205/693 (29%), Gaps = 125/693 (18%)

Query: 100 LKKSQDEFIKIRD--RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           + ++++  I        +             +   +   Y +  ++   +DF+DL++ T 
Sbjct: 149 ISRAKNRLITAEKYANDSALMARDRQQNMPAI-SRIYTLYADRCRQANAMDFDDLLVLTY 207

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            L  +      IR K      ++L+DE QDT+ +Q  ++  LT D           + + 
Sbjct: 208 QLFAEHPD---IREKYAHHFEYVLVDEYQDTNYVQQCIVLQLTRD----------HQRVC 254

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIY F GA    +L+   +             + +L  ++RST +I+   + +
Sbjct: 255 VVGDDYQSIYGFRGANIDNILQFNELY--------NDPKLFKLEQNYRSTRNIVKAANSL 306

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
               E            I          G   +++   S  +                  
Sbjct: 307 MKHNE----------RQIPKDVYSENDEGEKLIYKPAYSDKE------------------ 338

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                   A  +   I  +   +             +D  +L R    +  +    +   
Sbjct: 339 -------EAVIVCNEIKRIKRKEGG---------DYRDFAILYRTNSQSRSLEEEMK--- 379

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               I               IKD++A  R +++ +D+ +F  ++  P        I KI 
Sbjct: 380 -KQHIPYRIYGGLSFYQRKEIKDIIAYFRLVINPDDEEAFKRIINYPARGIGNTTIQKIA 438

Query: 458 T-QRHETETVYEYIQKFANC-------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                +  + +  I    +         ++K       I   +  +     +    +I+ 
Sbjct: 439 ATAVEQGVSFWTVIMSPGHYGLSVNKGTLAKIDAFRSLISSFMLKSLELDAYQLGQMIIK 498

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQE---LISELEQYPPTIK 562
                +   S    E       L+EFL       E       +    L   L++      
Sbjct: 499 ESGISKDIFSGVDPESLSRQQNLEEFLAGIQDFVESQREEGNENQVFLADFLQEVSLLTD 558

Query: 563 RAHSANHN--EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  +   V +MT+H AKGLE P VF+V     +F                      
Sbjct: 559 LDSDEGDDTNRVVMMTIHAAKGLEFPTVFIVGLEENIFPSPLSANSPRELEEERRLL--- 615

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                          YV +TRA    I+    N          T
Sbjct: 616 -------------------------------YVAITRAERHCILTNAQNRWRFGSMQFDT 644

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST--HHPENTPLEREETIKQLMDEQK 738
               +YD   +    +++  + S  K         +     ++ P  R +T + + D Q 
Sbjct: 645 PSRFIYDIDPSLIEEERMGASYSGGKSFRAGRNGGSYGDAFQDLPFSRNDTPEWMEDRQG 704

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
            P+   S  +     P  +   +   +  +   
Sbjct: 705 YPRPASSSYQGHTPTPRAVYQPSQKVERGSGAP 737


>gi|322418722|ref|YP_004197945.1| UvrD/REP helicase [Geobacter sp. M18]
 gi|320125109|gb|ADW12669.1| UvrD/REP helicase [Geobacter sp. M18]
          Length = 678

 Score =  267 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 92/599 (15%), Positives = 194/599 (32%), Gaps = 120/599 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +A  +   Y+ A K    +DF+D+I+ T +LL+       +     +  ++I++DE QDT
Sbjct: 168 MAALVYPRYQSALKAFNAIDFDDIIMLTAELLQHHP---PVLKHWQERFSYIMVDEYQDT 224

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ ++  L                L  VGD+ QSIY + GA+   +L  ++      
Sbjct: 225 NSSQYLLVNLLAAGC----------GNLCVVGDDDQSIYGWRGADVGNILDFEKDF---- 270

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               +    I+L  ++RST +IL   + V    +  +                       
Sbjct: 271 ----KGCRTIKLEQNYRSTGNILEAANSVIGNNKVRKAKR-------------------- 306

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW        +             D   +       A  +   I              K
Sbjct: 307 -LW-------TASGQGPLIDLCIVQDDEEE-------ATSVVERIQ---------LERFK 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +        +L R    +       RF      I  V        +   +KD ++  + I
Sbjct: 343 KDAPYSQFAILYRTNAQSRAFEEQLRFE----DIPYVLVGGTQFFERKEVKDSLSYLKVI 398

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKF 481
            +  D+++ + ++  P     +  + +I      +   ++E   +       ++    K 
Sbjct: 399 ANPLDEVALLRIVNFPRRGIGDSTVIRINQWSLEKEIPLFEAFSRADEIEGISDAIKEKV 458

Query: 482 QHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNF 535
               + + +            +    +    K  ++      ++       + +++ +N 
Sbjct: 459 HAFHRTLLDAADSFKAEGGLAERGKALFERLKIEEEIFRTIDDQKAARRKVENVEQIINS 518

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLV 591
               E+    ++L   I ++                  + V +M++H++KGLE P VFLV
Sbjct: 519 MAAYEERVPQATLGGFIEKVSLMDEDRFSGKDKKDHGKDAVTLMSLHSSKGLEFPFVFLV 578

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  HK                                      +  + +E  RL 
Sbjct: 579 GMEDEILPHK----------------------------------RAIYEDDSIDEERRLC 604

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           YVG+TRA  QL++ +        K  +R     + +       V++  +   +  +E  
Sbjct: 605 YVGITRARQQLVMTRTLFRKKYGKLEERVPSRFLEEIPGTVLNVQQSGVAREVTPEEAE 663


>gi|160900763|ref|YP_001566345.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
 gi|160366347|gb|ABX37960.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
          Length = 822

 Score =  267 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 115/738 (15%), Positives = 227/738 (30%), Gaps = 168/738 (22%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  W L   Q +  +             +L +   +   +        
Sbjct: 45  GAGSGKTRVLTTRIAWLLQTGQATPGSILAVTFTNKAAKEMLARLSAMLPYNVRGMWIGT 104

Query: 66  FSLLSSFFL------TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
           F  L +  L       +  +  + + TQ+       L ++     + F   + ++     
Sbjct: 105 FHGLCNRLLRAHHQAAKLSSTFQILDTQDQLSAVKRLCKQFNVDDERFPPKQLQYFIAGC 164

Query: 120 FKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +  +    +            +   YEE  ++  V+DF +L++ + +LL+     A +R
Sbjct: 165 KEEGMRPGDVVANDPDTRKKVEIYQLYEEQCQRESVVDFGELMLRSYELLRDD---AALR 221

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               +   HI++DE QDT+ +Q++ ++ L  D   G+   +   ++ AVGD+ QSIY+F 
Sbjct: 222 AHYQRRFRHIMVDEFQDTNKLQYQWLKQLAGDMVDGRLQATG--SVIAVGDDDQSIYAFR 279

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA    +    R    R          I+L  ++RS ++IL   + + S      G +  
Sbjct: 280 GARVGNMQDFVREFDVR--------QQIKLEQNYRSYSNILDCANALISHNSQRLGKNL- 330

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                                     +           + +  D           A+ + 
Sbjct: 331 --------------------------RTTQGPGEPVRIYEAPTDMAE--------AQWMV 356

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  ++  D           Q ++I VL R    + +I         +  I        
Sbjct: 357 EEIQQLVKKD---------GWQRQEIAVLYRSNAQSRVIESQL----FNAAIPYRVYGGL 403

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469
              +   IK  +A  R + +  DD SF+ ++  P        +  +    R    ++++ 
Sbjct: 404 RFFERAEIKHALAYLRLLENPHDDTSFLRVVNFPPRGIGARSVETLQDAARSAGCSLHDA 463

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDV 528
           +        +K    +  I  L    Q  +  +    I       + + +   G + I+ 
Sbjct: 464 VSAVPGAPGTKLAGFVAKIDVLREQTQGRTLREIIEAIEEESGLLEHYRNEKEGADRIEN 523

Query: 529 LDEFLNFTLRN----------------EQNSYSSLQE----------------------- 549
           L E +N                     E +   +L +                       
Sbjct: 524 LQELVNAAESFVTQEGFGRDAVALPLDEHDGARALTQSPASQGLDPALPLLDTPLTPPAG 583

Query: 550 ----------------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                           L + L             A  + V++MTVH +KGLE   VF+  
Sbjct: 584 TVAGMVDADTGETLSPLAAFLTHAALEAGDNQAQAGQDAVQLMTVHASKGLEFDAVFIGG 643

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F H++                                    + +   EE  RL Y
Sbjct: 644 VEEGLFPHEN----------------------------------AMMDRGGLEEERRLAY 669

Query: 653 VGMTRASDQLIICKHSNT 670
           V +TRA  +L +      
Sbjct: 670 VAITRARKRLYLSHSQTR 687


>gi|116327571|ref|YP_797291.1| DNA/RNA helicase UvrD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120315|gb|ABJ78358.1| DNA/RNA helicase UvrD [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 674

 Score =  267 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 105/665 (15%), Positives = 208/665 (31%), Gaps = 133/665 (20%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              FLT      K  + +    +      ++K S   + +  D                +
Sbjct: 113 QEGFLTTLLIANKVELKKAKVSEILGKISRIKNSGPAYREYLDSSLLESD--------QI 164

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+   K+   LDF+DLI+    LL+     A +R +  ++  + ++DE QDT+
Sbjct: 165 ANLIYDSYQTTLKEQNSLDFDDLILLPGILLRD---FAEVREEYHKKFQYFMVDEFQDTN 221

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+  +R+L  +           R L  VGD+ QSIY+F G++   +L  ++       
Sbjct: 222 QTQYVFLRALMGE----------NRNLCVVGDDDQSIYAFRGSDLSLILNFEKDFP---- 267

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               + +++ L  ++RST+ I+   + +     + +     S+                 
Sbjct: 268 ----EANVVRLLENYRSTSVIIQGANSLIKKNLSRRSKELFSSI---------------- 307

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          ++  +    D   +       A  +   I   I  D         
Sbjct: 308 ------------SGGRKIRYLERMDEKDE-------AAYVVDCIREEIIKDARVG----- 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 I +L R    T       R       I       +   D   ++D+++  R I 
Sbjct: 344 ----SQIAILFRTNFQTRPFEEELRS----RSIPYKLVGGYNFFDRKEVRDMISYIRLIA 395

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE----------YIQKFANCGI 478
           +  DD S + +L  P        +  I        E++YE          +I        
Sbjct: 396 NTRDDASLLRILNYPKRGIGPGSVSLIHEKASQTGESLYEILFRICESPDFIPSLQKKIQ 455

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQFISRFGNEVID-----VLDEF 532
           S+  + +  +              F     +      ++ +    +E +       L E 
Sbjct: 456 SEIYNFVNLVERTKKKFSTTPKMYFALREFIQEIGIEKEILLEEKDEKVAKARTFNLSEL 515

Query: 533 LNFTLRNEQNSY----SSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           +N     E+N       +L + I+ L       I        N ++++T+H +KGLE   
Sbjct: 516 VNMMSYFEENHDSPEKPTLFDFINRLNLLMEDEIPSDEDKKDNRIQLLTIHQSKGLEFES 575

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V++      +  +  +                                    ++S+ +E 
Sbjct: 576 VYVPGMEEGILPNSRVLT----------------------------------EESSVDEE 601

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RLLYV MTRA   L +   +N     +         + +                   +
Sbjct: 602 RRLLYVAMTRARKHLCLTGVANRRKFGEQIATQASRFLMEIDPETLDWVSNDEVRQQETE 661

Query: 708 EWIAY 712
           ++ A 
Sbjct: 662 DFFAE 666


>gi|262375711|ref|ZP_06068943.1| ATP-dependent DNA helicase Rep [Acinetobacter lwoffii SH145]
 gi|262309314|gb|EEY90445.1| ATP-dependent DNA helicase Rep [Acinetobacter lwoffii SH145]
          Length = 679

 Score =  267 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 101/632 (15%), Positives = 210/632 (33%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      + +   +++ I       T +  +          +L   YE  
Sbjct: 127 RDNLSGAESKELIAKAMKMISDWKNDLIPPEQAHTTCETAEDVQ-----FAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQEN---AEVRDKWQNRVRYLLVDEYQDTNTAQYILVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   ++              +I+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLQQDFPN--------LKVIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  ++   +  ++D 
Sbjct: 281 EQNYRSTSRILKAANTVIGNNPHIFDKKLWSDK------------GHGEVIRVITCRNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A R+   + ++I    +           KD  VL 
Sbjct: 329 D-----------------------EAERV---VKDLITHKLMNGK------SWKDYAVLY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARILETHLRQMQ----IPYKLSGGQSFFARAEIKDMMSYLRLIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQHVIKYIHEL-I 492
           + +P        + K+    +    ++                  ++      +I     
Sbjct: 413 INTPKRAIGPVTLEKLGLFAQENNLSLLAAAADQRLTMAIPKKATTQLAEFADFIEGFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNFTLRN----EQNS 543
           ++     P      ++                       D ++   +         E   
Sbjct: 473 NLLDDDEPVPIIRQMMIEAGYIDYIKETAATPAQEKTKLDNIEVLYSSIQSLINRTEDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I ++       ++    + ++V ++T+H +KGLE P V+L+    ++  HK+ 
Sbjct: 533 EKNIESVIRKMVLLDMLEQQQEEEDTDKVNLLTLHASKGLEFPYVYLIGLEEEILPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IAAETVEEERRLMYVGITRARQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           I          +  Q T    + +   ++   
Sbjct: 618 ITLAEQRKAGGQMKQMTPSRFLDELPEDELEW 649


>gi|261496545|ref|ZP_05992925.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype
           A2 str. OVINE]
 gi|261307748|gb|EEY09071.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype
           A2 str. OVINE]
          Length = 672

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 107/644 (16%), Positives = 223/644 (34%), Gaps = 125/644 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K+++ + + +    LK  +    +    +          +       +  +    Y+   
Sbjct: 118 KHLLPENVTEDKDLLKALIATISNWKNDLLSPERVLTRVRDERE--RVFSHFYQLYQNQL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    LDF+DLI+    L ++   +     +  Q+I ++L+DE QDT+  Q+E+I+ +  
Sbjct: 176 KAYNALDFDDLIMLPVLLFRQFPEAK---SRWQQKIRYLLVDEYQDTNTSQYELIKLIVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA+P+ + R +               +I+L 
Sbjct: 233 N----------EPNFTVVGDDDQSIYSWRGAKPENMQRLREDF---------DLQVIKLE 273

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + +    ++       S      +                       
Sbjct: 274 QNYRSSQRILHCANILIDNNDHLFSKRLFSELGQGEKL---------------------- 311

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                         + +  +    A RI            + ++   +  + KD  +L R
Sbjct: 312 -------------QVIEAKNEEHEAERIV---------GELIAHRFSKKTKYKDYAILYR 349

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+      L    +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 350 GNHQSRLLEK----LLMQNRIPYKISGGTSFFARAEIKDMMAYLRLVVNQDDDAAFLRIV 405

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHI 494
            +P        + K+      +  +++E       IQ+         Q   ++I E+   
Sbjct: 406 NTPKREIGAATLEKLGILANEKQVSLFEAIFDFELIQRLTPKPYQALQDFARWIVEIADQ 465

Query: 495 AQFCSPHDFFTLILGAKKGRQQF--------ISRFGNEVIDVLDEFLNFTLRNEQNSYS- 545
           A    P +    +L   +             ++   +  +  L E++   L  ++     
Sbjct: 466 ADRSDPIEAVKDLLAKIQYEAYLYEMAANPKVAEMQSRNVQTLFEWVQAMLEGDEIEPPM 525

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +       ++V++MT+H +KGLE P VFL+     +  H+    
Sbjct: 526 NLVQVVNRLTLRDMLERGEEDDEADQVQLMTLHASKGLEFPHVFLIGMEEGILPHQTSLD 585

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA   L   
Sbjct: 586 -----------------------------------EDNVEEERRLAYVGITRAQQTLTFS 610

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +CK      E    + + + +       +   +K ++T    + 
Sbjct: 611 LCKERRQYGEIIKPEPSRFLLELPQDDLEWESEKPRMTEQEKEA 654


>gi|288958808|ref|YP_003449149.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp.
           B510]
 gi|288911116|dbj|BAI72605.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp.
           B510]
          Length = 773

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 118/785 (15%), Positives = 230/785 (29%), Gaps = 142/785 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +    L   + +                + ++   L            
Sbjct: 52  GAGTGKTRVLTTRLAHLLMTRRAAAFQILAVTFTNKAAREMRERVAHLVGIEPEGWWLGT 111

Query: 66  FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS--------QDEFIKIRDRF 114
           F  L++  L +       + N    + + +   +K+ L+            + +   +R+
Sbjct: 112 FHALAARILRRHAELVGLKSNFTILDTDDQVRLIKQLLEAENIDSKKWPARQILGAIERW 171

Query: 115 NTYKMFKSTLASLT-------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
               +    LA              +   Y+E  +     DF DL+++   +L+      
Sbjct: 172 KDRGLTPDRLADADGGDVAGGRVVAIYRAYQERLRSLNACDFGDLLLHNLTILQNNPD-- 229

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     ++  +IL+DE QDT++ Q+  +R L++          + + +  VGDE QSIY
Sbjct: 230 -VLADYHRKFKYILVDEYQDTNVAQYLWLRILSQ----------AHKNICCVGDEDQSIY 278

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           ++ GAE   +LR +              +II+L  ++RST  IL     + +  +   G 
Sbjct: 279 AWRGAEIGNILRFETDFP--------GATIIKLEQNYRSTGHILAAASGLIANNQGRLGK 330

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                     LW             +     + +D   +       AR
Sbjct: 331 T---------------------LW-------TEADGGEPVKVKAVWDGEEE-------AR 355

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I  +    T              I VLVR    T         L     +     
Sbjct: 356 WVGEEIEGLQRKGTPL----------SQIAVLVRAGFQTREFEERFITL----GLPYKVL 401

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                 +   I+D +A  R + S +DDL+F  ++  P        +  +    R    ++
Sbjct: 402 GGPRFYERQEIRDALAYFRVVNSGDDDLAFERIVNLPKRGVGPAAMQTLYTAARARGISL 461

Query: 467 YEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            E           K       + +++       +       +    IL      + +   
Sbjct: 462 TEAGWALTETDELKPKLRSTLRGLLQDFFRWRTLMATVPHTELARSILDESGYTRMWQED 521

Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
              E    ++ L E +      E         L   LE     ++ A +A   +V +MT+
Sbjct: 522 KTPEAPGRLENLKELITAMAEFEN--------LPGFLEHVALVMENAEAAGIEQVTVMTL 573

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE   VFL      VF ++       +                            
Sbjct: 574 HGAKGLEFDHVFLPGWEEGVFPNQRALDETGI---------------------------- 605

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT----SNEKKSNQRTWYDMVYDSFHNDE 693
               +  EE  RL YVG+TRA  +  +   +N     +       R   ++   +   + 
Sbjct: 606 ----AGLEEERRLAYVGLTRARRRAYVSHAANRRLYGNWVSAVPSRFVEEIPQANVEAEA 661

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                  +          +             R  T +    +     +    +      
Sbjct: 662 ANGLFAGSGGRAGGFGGGFGAYGAGGAGGFQFRGSTRQAPAPKTITLDQGAYAVAPRPRP 721

Query: 754 PYILN 758
                
Sbjct: 722 DAPFA 726


>gi|224371114|ref|YP_002605278.1| PcrA1 [Desulfobacterium autotrophicum HRM2]
 gi|223693831|gb|ACN17114.1| PcrA1 [Desulfobacterium autotrophicum HRM2]
          Length = 619

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 93/551 (16%), Positives = 177/551 (32%), Gaps = 119/551 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YE+   +  ++DF+++++ T D+L+       I+ +  Q+  HIL+DE QDT+ +
Sbjct: 163 DLYKAYEQRLFEANLVDFDNILLKTRDILRDFPE---IQQRYKQQFTHILVDEYQDTNNL 219

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E+ R L  D             LF VGD+ Q++Y F G+     L+            
Sbjct: 220 QDELTRLLLGD----------HGNLFCVGDDWQAVYGFRGSNVNHFLQFSNRYDN----- 264

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I  L  ++RS  +I+   + +     +              +     + G V++ 
Sbjct: 265 ---ARIFRLEENYRSADEIVQAANGLIDFNADKMDK----------KCFSQKKGGVVEIH 311

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           E      +                          A  +A  +  +              I
Sbjct: 312 EFFSEGEE--------------------------AEWVAKRLKALNCKGE--------GI 337

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               I V+ R +  +     + R  K    I           + + I D+ +        
Sbjct: 338 DFDKIAVVYRTKFCSLAFEKIFRMFK----IPYRLMGAQGFFERMEILDINSYLSAAQFP 393

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--ISKFQHVIKYIH 489
            DD+SF  ++ +P        + KI T + E  ++    +K         K    +  + 
Sbjct: 394 NDDVSFERIINTPKRGIGPAMVKKIGTMKEEGMSLSGAARKMVQERVLTPKIHGELSKLL 453

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSY 544
           EL+       P+     +L           +   E       + +++ +           
Sbjct: 454 ELLDSLWDLPPNQAMERVLDGTAYFDYLKKKVKTEAEFISKKENIEQLVYTAREKST--- 510

Query: 545 SSLQELISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                ++  LE+        +    +   V ++T+H+AKGLE   VF+V    ++F H  
Sbjct: 511 -----ILEYLEEAALIREDTKDEDDDGEGVALLTIHSAKGLEFDTVFVVGCEEKLFPHWR 565

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                 +   +E  RL+YV MTRA   L
Sbjct: 566 SID---------------------------------AGEQAIQEERRLMYVAMTRAERFL 592

Query: 663 IICKHSNTSNE 673
            +   +    +
Sbjct: 593 YLSHANYRKGQ 603


>gi|254362674|ref|ZP_04978761.1| Rep family ATP-dependent helicase [Mannheimia haemolytica PHL213]
 gi|153094293|gb|EDN75157.1| Rep family ATP-dependent helicase [Mannheimia haemolytica PHL213]
          Length = 672

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 107/644 (16%), Positives = 223/644 (34%), Gaps = 125/644 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K+++ + + +    LK  +    +    +          +       +  +    Y+   
Sbjct: 118 KHLLPENVTEDKDLLKALIATISNWKNDLLSPERVLTRVRDERE--RVFSHFYQLYQNQL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    LDF+DLI+    L ++   +     +  Q+I ++L+DE QDT+  Q+E+I+ +  
Sbjct: 176 KAYNALDFDDLIMLPVLLFRQFPEAK---SRWQQKIRYLLVDEYQDTNTSQYELIKLIVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA+P+ + R +               +I+L 
Sbjct: 233 N----------EPNFTVVGDDDQSIYSWRGAKPENMQRLREDF---------DLQVIKLE 273

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + +    ++       S      +                       
Sbjct: 274 QNYRSSQRILHCANILIDNNDHLFSKRLFSELGQGEKL---------------------- 311

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                         + +  +    A RI            + ++   +  + KD  +L R
Sbjct: 312 -------------QVIEAKNEEHEAERIV---------GELIAHRFSKKTKYKDYAILYR 349

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+      L    +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 350 GNHQSRLLEK----LLMQNRIPYKISGGTSFFARAEIKDMMAYLRLVVNQDDDAAFLRIV 405

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHI 494
            +P        + K+      +  +++E       IQ+         Q   ++I E+   
Sbjct: 406 NTPKREIGAATLEKLGILANEKQVSLFEAIFDFELIQRLTPKPYQALQDFARWIVEIADQ 465

Query: 495 AQFCSPHDFFTLILGAKKGRQQF--------ISRFGNEVIDVLDEFLNFTLRNEQNSYS- 545
           A    P +    +L   +             ++   +  +  L E++   L  ++     
Sbjct: 466 ADRSDPIEAVKDLLAKIQYEAYLYEMAANPKVAEMQSRNVQTLFEWVQAMLEGDEIEPPM 525

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +       ++V++MT+H +KGLE P VFL+     +  H+    
Sbjct: 526 NLVQVVNRLTLRDMLERGEEDDEADQVQLMTLHASKGLEFPHVFLIGMEEGILPHQTSLD 585

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA   L   
Sbjct: 586 -----------------------------------EDNVEEERRLAYVGITRAQQTLTFS 610

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +CK      E    + + + +       +   +K ++T    + 
Sbjct: 611 LCKERRQYGEIIKPEPSRFLLELPQDDLEWESEKPRMTEQEKEA 654


>gi|261838752|gb|ACX98518.1| DNA helicase II [Helicobacter pylori 51]
          Length = 681

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 96/572 (16%), Positives = 182/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++              +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHKKM--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVGFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K            I 
Sbjct: 388 RFFIRRVLNKPSRGLGKITQELIFSLLDGEGLNLEEVLKLGVFKGKLNPKNEYALNKFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVEEFCARFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA ++L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEELQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVQERSYFGRKISCSPSVFLEEAKLLKQDNPP 619


>gi|54310114|ref|YP_131134.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9]
 gi|46914553|emb|CAG21332.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9]
          Length = 1227

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 156/997 (15%), Positives = 312/997 (31%), Gaps = 164/997 (16%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLS 70
                 K LW      +  +     ++  +     L    AQ  Q A+Q     E    L 
Sbjct: 251  RLDAIKALWRDHEADLEPLIANSGVNKRSYTKKSLPTWLAQVSQWAAQPTDSYELPDKLD 310

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
             F             T +       +   + +  D    + D    + + +  +  +   
Sbjct: 311  RFHQHTLIDK-----TAKGEAPKHAVFVAIGELLDNPANLHDPLMAHAIEQCRVLLV--- 362

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                    +AK++   L F+DL+   +  +   D    +  +I  +    +IDE QDT  
Sbjct: 363  --------QAKERKGWLSFDDLLTQLSAAI-DNDQDDLLAGRIRSQYPVAMIDEFQDTDP 413

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q+ +  ++  D             LF +GD KQ+IY+F GA+    ++ +R      T 
Sbjct: 414  QQYSIFSNIYRD--------QPECGLFMIGDPKQAIYAFRGADIFTYIQARRQVHDHYT- 464

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                     L  ++RSTAD++  V+ VF+ PE+     +D      + SS+         
Sbjct: 465  ---------LDTNWRSTADMIASVNSVFARPESPFIYDQDIQFLSVNHSSKA-------- 507

Query: 311  WEQVVSQHDSQCNPQQESWTSYF---DSLPQESSASILARRIAYTISNMI-----GTDTI 362
                    D+Q       W         + + S    +A   A  I N++     G+   
Sbjct: 508  -PDRSWWLDNQAQHALTFWHQDSPDGKPVTKGSYQEAMANATAAQIQNVLTQAEQGSAFF 566

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                 K+ IQA D+ VLVR   +  L+    + L      SV  ++R  +       D+ 
Sbjct: 567  LDKDSKKAIQASDVAVLVRTGNEGKLVR---KALSEQGIASVYLSNRDSVFSTAEAADIQ 623

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF- 481
             L + +L+ EDD +    L S LF  +  ++ ++    + +E  +E           ++ 
Sbjct: 624  RLLQAVLTPEDDRALRAALASSLFALTAVELDQL----NNSENAWEAAINNFKEYRKQWL 679

Query: 482  -QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
             + V+  I  ++              +L  + G ++            + E L    +  
Sbjct: 680  TRGVMAMIRSVMAK------EKMAENLLAEEGGERRLTDLL------HIAELLQEASQTL 727

Query: 541  QNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             + Y  L+ L   + +             +  N V+I+T+H +KGLE  +VF+    S  
Sbjct: 728  DSDYGLLRWLAEHVAEPNGNAEDQVLRLESERNLVQIVTIHKSKGLEYDLVFMPFVCSY- 786

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
               +   K  +      +    + I +        +D I+   K    E  RL+YV +TR
Sbjct: 787  --REVDSKGEVKYHDEAENITVLDIAKQ-------ADSIEKADKERLAEDLRLIYVALTR 837

Query: 658  ASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHND----------------ERVKKIKL 700
            A     I           K      +  +     N                 E    I +
Sbjct: 838  AVYGCYIGMAPIRNGRSTKEPTGLHHSAMGHLIQNGKEGTIADLELALAKLAESQPAITI 897

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                   E           E +P +   ++++          +    +   +    L   
Sbjct: 898  VEPPVLPEEKWQPLDQEDAELSPNQFTMSLERNWWMTSYSSLVKQGHQAYHDSSLDLPGF 957

Query: 761  TIDTKGKTNLESLLS------------------DNQTFNRGLIIHKLLQVIFTLPEHKRK 802
             I++  +T ++   S                    +    G  +H + + I         
Sbjct: 958  DIESAAETAIDGEASVDHDGNLVELEPEYSIYTFPRGARPGTFLHTVFEEIEFTAPVDSP 1017

Query: 803  NFITSYCT----KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC---DSYSEVSV---- 851
              + +       +N  L      + L+  +     +      +        +E+      
Sbjct: 1018 ETVATLTDLLQKENYDLVWLPVLQQLIKDVLNCSLDGQGMKLVDKNPSQRLTEMEFLLPI 1077

Query: 852  ---------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
                                 +G++       ++ G ID +       ++ ++K++H   
Sbjct: 1078 TLLSSRMLNKVIAKHDTVSAKAGELGFATVSGMLKGFIDLVFEHDGKYYVLDWKSNHLGD 1137

Query: 891  QE---------IEHIPYTHIAQLSIYEKILKDSYPNK 918
                            + +  Q  IY   L+    ++
Sbjct: 1138 DPSVYRGAQLVEAMRDHRYDLQYQIYALALQRFLRSR 1174


>gi|227498671|ref|ZP_03928815.1| ATP-dependent DNA helicase pcrA [Acidaminococcus sp. D21]
 gi|226904127|gb|EEH90045.1| ATP-dependent DNA helicase pcrA [Acidaminococcus sp. D21]
          Length = 750

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 100/699 (14%), Positives = 199/699 (28%), Gaps = 132/699 (18%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           L          ++   +   F              +   YE+  ++N  +   D      
Sbjct: 139 LSAVMSVISNAKNAQLSSAAFARKADDFHAKKVAEIYLEYEKRMRQNNAV---DFDDLLL 195

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
             +        +R K   +  +++IDE QDT+ +Q+ + + ++               L 
Sbjct: 196 LSVDLLQHDRDVREKYQHKFQYVMIDEYQDTNHVQYLLAKLISA----------PENNLC 245

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           AVGD  QSIY + GA+   +L  ++              I +L  ++RST  IL   + V
Sbjct: 246 AVGDIDQSIYGWRGADISNILDFEKDYP--------DAKIYKLEQNYRSTQVILDAANAV 297

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                  +  +                     LW           N +  ++   F+   
Sbjct: 298 IEHNSARRPKN---------------------LW-------TENGNGKPITYFQAFNDRN 329

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +       A    + +  +                  D+ VL R    + +         
Sbjct: 330 E-------AEFTVHNMRRLRDEAH---------FHLGDMAVLYRTNAQSRMFEETL---- 369

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI- 456
               +  +        D   +KDL+A  R +++  D+ +   ++  P        + K+ 
Sbjct: 370 IKNGLPYIMVGSLKFYDRKEVKDLLAYLRLLVNGRDEQALERVINEPKRGIGSATVEKLK 429

Query: 457 CTQRHETETVYEYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                   +++E ++     +     + K       +  L             T IL   
Sbjct: 430 MLLNETGLSLHEALKAPSAGELLGRSLLKVTAFSTLLESLRKETDTVPVEQLMTDILEKT 489

Query: 512 KGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA- 567
                 +     +     D LDE     +  +++     + L   L           +  
Sbjct: 490 GYWDALLLEGSEQARGRMDNLDELKRIAMEFQEDENEEEKTLEDFLNHVALVSDIDDAKL 549

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           + + V +MT+H+AKGLE PVVF+      +F  +                          
Sbjct: 550 SRDAVTLMTLHSAKGLEFPVVFMAGMEEGLFPSQRSLD---------------------- 587

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                            EE  RL YVG+TRA  +L +    +           +   V  
Sbjct: 588 ------------DTDKLEEERRLCYVGITRAKKKLFLTSCRSRM--------MYGRTVMF 627

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                       L  +    +           EN P E    ++ +              
Sbjct: 628 PPSRFLEEIPRHLIETALVGQQDGSGAQRAAWENRPQEEGSGLRSIA---------RRRG 678

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
            + ++     +    D K +         ++ +  G +I
Sbjct: 679 ASILDRRDRRSEYVPDGKLEVFKAGDKVRHKAWGVGTVI 717


>gi|188528249|ref|YP_001910936.1| DNA helicase II [Helicobacter pylori Shi470]
 gi|188144489|gb|ACD48906.1| DNA helicase II [Helicobacter pylori Shi470]
          Length = 681

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 97/572 (16%), Positives = 183/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GVKVVKLETNYRSSAEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSHSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIK 486
                 +L  P     +     I +    E   + E ++      K            I 
Sbjct: 388 RFFIRRVLNKPSRGLGKITQEWIFSLLDDEGLNLEEALKLGVFKGKLNPKNEHALNKFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F    L      + +       E    + E L     + + + +
Sbjct: 448 MIGRLRE-AFEISVEEFCARFLEETNLLKSYEKEDNYEEREGFVKELLALVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVQERSYFGRKISCSPSVFLEEAKLLKQDNPP 619


>gi|327478847|gb|AEA82157.1| DNA-dependent helicase II [Pseudomonas stutzeri DSM 4166]
          Length = 729

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 117/724 (16%), Positives = 238/724 (32%), Gaps = 136/724 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-LKKAQTLQQASQTQCIEE 64
           G    ++  L+++  W L   + + ++  +S++          ++ + L   +       
Sbjct: 32  GAGSGKTRVLVHRIAW-LHQVERASLHSILSVTFTNKAAAEMRQRIEQLLHVNPQGMWVG 90

Query: 65  RF--------------SLLSSFFLTQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIK 109
            F              + L+  F       Q+ ++ + I +    + +   +++Q     
Sbjct: 91  TFHGLAHRLLRAHWREAKLAENFQILDSDDQQRLVKRVIRELGLDEQRWPARQAQWWINA 150

Query: 110 IRDRFNTYKMFKSTLASLTLAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            +D     +  +         +  +   YEEA  +  V+DF +L++   DL +       
Sbjct: 151 QKDEGLRPRNIQPGGDLFLATQLKIYEAYEEACARAGVIDFSELLLRALDLWRDHPG--- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     +   H+L+DE QDT+ +Q+  +R L +             +L  VGD+ QSIY 
Sbjct: 208 LLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAK----------GGESLMVVGDDDQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + + +                  I L  ++RSTA IL   + + +  +   G  
Sbjct: 258 WRGARIENLHQFSADFP--------DAETIRLEQNYRSTACILKAANALIANNQGRLGK- 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW        S C  +  S  + F+   +       AR 
Sbjct: 309 --------------------ELW-------TSGCEGEPISLYAAFNEHDE-------ARY 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +  +I   I             +   +I +L R    + ++       K    I      
Sbjct: 335 VVESIEKAIRDG----------MSRSEIAILYRSNAQSRVLEEALLREK----IPYRIYG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                +   IK+ MA  R I ++++D +   ++  P     E  +  +    R +  +++
Sbjct: 381 GQRFFERAEIKNAMAYLRLIQTRDNDAALERVINVPARGIGEKTVECLRQLAREQGLSMW 440

Query: 468 EY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                    +  +    S     ++ +  L    +    H    L++             
Sbjct: 441 AALHQAVGTKAVSGRAASALNGFVELVDTLALKVEKLPLHSMAQLVIEESGLLAYHRDEK 500

Query: 522 GNEVI---DVLDEFLNFTLRNE---QNSYSSLQELISELEQYPPTIKRAHSAN-HNEVRI 574
           G +     + L+E ++     +   +        L + L+          + +  + V++
Sbjct: 501 GEKAQARVENLEELVSAARAFDSYSEEEDDIQSPLAAFLDHASLEAGEQQAGDHEDSVQL 560

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H+AKGLE P+VFLV     +F HK                                 
Sbjct: 561 MTLHSAKGLEFPLVFLVGMEEGLFPHKMSL------------------------------ 590

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                +    EE  RL YVG+TRA  QL+I                    V +      +
Sbjct: 591 ----EESGRLEEERRLAYVGITRAMQQLVITYAETRRLYGSETYNKVSRFVREIPPALVQ 646

Query: 695 VKKI 698
             ++
Sbjct: 647 EVRL 650


>gi|291165683|gb|EFE27731.1| ATP-dependent nuclease subunit A [Filifactor alocis ATCC 35896]
          Length = 1224

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 130/673 (19%), Positives = 236/673 (35%), Gaps = 94/673 (13%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK--------------KSPDL 96
             LQ     + +EE F        T  F   K +   +                 ++ D+
Sbjct: 257 DKLQIQQLKKALEEGFDAFVRALGTISFGRLKTVTKAQKESGSFPEEILNTVKEIRNQDI 316

Query: 97  KEKLKKSQDEFIKIRDRFNTYKM---FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
           K+ ++  +             +M       +      +  +  Y+E KK+  +LDF DL 
Sbjct: 317 KKAVENLKKTVGTGNQERYYQQMKNMAPLMMELYRFVEQFSLRYQEKKKEQEILDFSDLE 376

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
                LL+       IR  +  +  +I  DE QD++L+Q  +I ++              
Sbjct: 377 HLVLKLLEDDS----IRQVLQHKYEYIFFDEYQDSNLVQETIIHAIC-----------RN 421

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             LF VGD KQSIY F  AEPK              +       I+L  +FRS  +IL  
Sbjct: 422 NNLFFVGDMKQSIYGFRLAEPKL---FHERYDNYKNSQDGLSVTIDLSKNFRSRKEILDF 478

Query: 274 VDKVFSIPENAQGLSEDSTTT---IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
            + +F      Q    D T     + H      Q  +V+L     S+             
Sbjct: 479 CNDIFLSLMTEQLGEIDYTQEGQALVHGLEYPEQSDSVELCLCEKSEE------------ 526

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                      ++I  + I   I  + G     + G+++ +Q +D++VL+R  K++    
Sbjct: 527 ----------VSAISYQVIVQKIQELQGRLWQNAKGEQKELQYRDMVVLMRSPKNSA--- 573

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                +  +  I    +   +  + + I  L+   R I ++  D + +  + S    F E
Sbjct: 574 KELEQILKEKGIPCYVDYSSVGFEVMEIYRLLEYLRVIDNEMQDEALLGAMVSFFGGFRE 633

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGIS------------------------KFQHVIK 486
           D++ +I + R E  + Y+ IQ +                              K +    
Sbjct: 634 DELAEIRSHRREG-SFYDAIQDYVKSSEESVLEDSSVSAENTDSVISKQRLQQKVKDFFD 692

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
            +       +F    +F   ++          +   G E  + +  F+      + +   
Sbjct: 693 KVQYWRKRERFEPLSEFLWDLVTETGYLNYNALLEKGEERTENIAGFIKKAEEYQSHEGE 752

Query: 546 SLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            L   +  +     E+       A S + N VRIM++H +KGLE PVVFL D   Q +  
Sbjct: 753 GLFGFLCYIDRILREKGDSLEVSALSESENVVRIMSIHKSKGLEFPVVFLADLQRQFYLP 812

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +    + +   L            +   +     +    K+    E  R+LYV +TRA D
Sbjct: 813 ESRDSILLHNELGIGAREVNLDRGTYCDSLGKKVIQMKKKQEQLSEEVRILYVALTRAID 872

Query: 661 QLIICKHSNTSNE 673
           +LI+    ++  +
Sbjct: 873 RLILVGEVSSIPK 885



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 60/180 (33%), Gaps = 14/180 (7%)

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
                                   +G + H +LQ +        +           +L  +
Sbjct: 1055 FEEHQQYRLPQFLQKEKPLNAAQKGTLYHFVLQSLPIKSYTTEELEEKLDELVVKELLYS 1114

Query: 819  KEYKNLLLS-ITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
            ++   +  S + +  E+      +S D  Y E          K   I+ G ID   + + 
Sbjct: 1115 EDRAQIDSSYLMKFFESEFGKRVISADKVYREKPFM----LKKDGYILEGIIDCYFLEEG 1170

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFII 935
             + +F++KT  +           H AQL +Y + L+ +Y  + +    ++++    +  +
Sbjct: 1171 KLILFDFKTDQY------RNAEKHRAQLELYAEALEKNY-GRPVDEIYVVWLRYGTISRL 1223


>gi|54298803|ref|YP_125172.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Paris]
 gi|53752588|emb|CAH14021.1| ATP-dependent DNA helicase Rep [Legionella pneumophila str. Paris]
          Length = 665

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 105/684 (15%), Positives = 223/684 (32%), Gaps = 140/684 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + NE    +     P    +   +  + +L +       + +   L+        E+   
Sbjct: 58  AANEMRARVSA-FLPAVSRRGLKVATFHTLGLSI-IKRDVSRCD-LKPGFSIFDSEDCLQ 114

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-- 125
           +L  F            + +  +      ++ + K Q +    ++     ++        
Sbjct: 115 ILRGFL----------PVNKATD------RDFILKVQQQISLWKNNLLNPELILQNPPET 158

Query: 126 -SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                A  +   Y+EA K    +DF+DLI    +LL      A +      +I H+L+DE
Sbjct: 159 LLCDEALTIYPRYQEALKAYNAVDFDDLIRLPVNLLNDH---ADVLEYWQNKIRHLLVDE 215

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD++  Q+ +++ L                   VGD+ QSIY++ GA+P+ + + ++  
Sbjct: 216 YQDSNTSQYLLVKKLAG----------VRAHFTVVGDDDQSIYAWRGAKPENLAQLQKDF 265

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +          II+L  ++RST+ IL   + + +  ++       S             
Sbjct: 266 PR--------LKIIKLEQNYRSTSRILHAANHLIAHNQHLFEKKLWSDL----------- 306

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            G  +L   V  + +                          A  +   I+++I       
Sbjct: 307 -GHGELLRVVSCKDEQD-----------------------EAEHV---IADLISH----- 334

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
              +      D  +L R      +   + R     + I    +        L ++D+ A 
Sbjct: 335 -KLRNRTNYSDYAILYRGNHQARIFEKVLR----HHGIPYHISGGQSWFAKLEVRDIFAY 389

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF------ANCG 477
            + + ++ DD +F+  + +P     E  +  +    +    ++Y            A+  
Sbjct: 390 LKLLCNEADDAAFLRAITTPKRGIGESSLDALGRYAQSRGISLYHGSDHLALSEFVADKQ 449

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-----IDVLDEF 532
              F     ++ ++       S  +    ++           +  +       +D + E 
Sbjct: 450 RMIFHDFKLWMEDIKKRISSDSVLEHLRQMVEDIGYEAYIYEQCDSPAKAQKKMDNVWEL 509

Query: 533 LNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           L +  R        SL +++++L       +    ++ + V++MT+H +KGLE P V+LV
Sbjct: 510 LEWVNRLLNKEPEQSLMDVVNKLILIDILEQSD-ESSSDVVQLMTLHASKGLEFPFVYLV 568

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      +     EE  RL 
Sbjct: 569 GMEEELLPH-----------------------------------RVSIDDDQIEEERRLA 593

Query: 652 YVGMTRASDQLIICKHSNTSNEKK 675
           YVG+TRA   L            +
Sbjct: 594 YVGITRAQRGLCFTLAKQRRRAGE 617


>gi|190576381|ref|YP_001974226.1| DNA-dependent helicase II [Stenotrophomonas maltophilia K279a]
 gi|190014303|emb|CAQ47950.1| putative DNA helicase II [Stenotrophomonas maltophilia K279a]
          Length = 730

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 106/641 (16%), Positives = 206/641 (32%), Gaps = 123/641 (19%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +   A L   +     Y+    +  ++DF +L++  ++LL+       +   
Sbjct: 154 RRPQHIQPEPHDAWLETMRQAYIEYQARCDRAGLVDFAELLLRAHELLRDNPA---LLSH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  D             +F VGD+ Q+IY + GA
Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGD----------SGHVFVVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V    R               I L  ++RSTA+IL   + V +   +  G      
Sbjct: 261 KVENVQGFLRDFP--------GAQTIRLEQNYRSTANILGAANAVIAHNPDRIGK----- 307

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           + +     + ++ + +       AR I   
Sbjct: 308 ----------------QLW-------TDSGDGEPIDLYAAYNEMDE-------ARYIVER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 338 ARQWVRDGG----------SYTEVAVLYRSNAQSRALEEAL----LSEQVPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R +  +++E   
Sbjct: 384 FERAEIKDALAYLRLLSNRNDDAAFERAVNTPTRGIGDRTLDEVRREARAQGISLWEATM 443

Query: 472 ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  ++EL       +  +    +L   + R+ +        
Sbjct: 444 LVTQGNALAARARNALAGFLGLVNELQAQTVHMTLAERVDHVLARSQLREHWSKESRNSL 503

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYS------SLQELISELEQYPPTI-KRAHSANHNEVR 573
                 D LDE ++   R  + +         + EL++ L        +    A  + V+
Sbjct: 504 DSESRTDNLDELVSVASRFVRRADDIEEVGEDMDELVAFLAYAALEAGEGQAQAGEDGVQ 563

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE P+VFL      +F                                   
Sbjct: 564 LMTLHSAKGLEFPLVFLAGMEDGLFPS--------------------------------- 590

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                 +    EE  RL YVG+TRA  +L++    +     + N       + +      
Sbjct: 591 -ARSLEESGRLEEERRLAYVGITRARQKLVLSYAESRRIHGQDNYSLPSRFLREIPRELL 649

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              + K+  S       +        E  P++    +    
Sbjct: 650 HEVRPKVQVSRPASMGASRVMGHASIEAPPVKLGALVTHPK 690


>gi|237741609|ref|ZP_04572090.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 4_1_13]
 gi|229429257|gb|EEO39469.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 4_1_13]
          Length = 735

 Score =  267 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 105/546 (19%), Positives = 182/546 (33%), Gaps = 117/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y     ++  +DF D+++NT  LL+K +    I  K+  +  +I+IDE QDT+ +
Sbjct: 167 EVYDKYNRVLLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +          
Sbjct: 223 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFETNYNN----- 267

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST  IL   +++    ++++                        LW
Sbjct: 268 ---AKIIKLEENYRSTTTILDAANELIKNNKSSKDKK---------------------LW 303

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              +  ++  + S       RI   I                 I
Sbjct: 304 -------TQNGKGDLIKVLACDNARDEVS-------RIIEIIKENHQNG----------I 339

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D+ +L R    + +           Y I               IKD++A    I++ 
Sbjct: 340 AYRDMTILYRTNAQSRVFEEGF----LRYSIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 395

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484
           +D+L+   ++  P     E  + KI    R     + E +               K   +
Sbjct: 396 QDELNLQRIINVPKRKVGEKGVEKIIAYARENNLNLLEALSHIKEISGLTAVGKEKLLEM 455

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN 542
              I EL  ++   +       ++   K        +      I+ +DEF N  L  E  
Sbjct: 456 YDIIKELKDLSYTETASYIVQTLIDKIKYIDYIKENYDDAEARIENIDEFKNSILELE-- 513

Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      L   LE     +         + V++MT+H +KGLE P+VFLV   +++F   
Sbjct: 514 NVVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGS 573

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                 ++   EE  RL YV +TRA  +
Sbjct: 574 ----------------------------------RAMFEEKEMEEERRLCYVALTRAEKK 599

Query: 662 LIICKH 667
           L +   
Sbjct: 600 LYLSHA 605


>gi|254455522|ref|ZP_05068951.1| DNA helicase II [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082524|gb|EDZ59950.1| DNA helicase II [Candidatus Pelagibacter sp. HTCC7211]
          Length = 678

 Score =  267 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 105/546 (19%), Positives = 181/546 (33%), Gaps = 122/546 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y++        DF DLI++T  +L+       IR        +IL+DE QDT+ I
Sbjct: 174 PLYKIYQQKLIDLNSCDFGDLILHTVKILENYPD---IRNIYSNNFKYILVDEYQDTNFI 230

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q + +  L+E              L  VGD+ QSIYS+ GAE K  L   ++        
Sbjct: 231 QSKWLNLLSE----------KHNNLCCVGDDDQSIYSWRGAEIKNFLEFDQVYNN----- 275

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RS+ +IL+V   + S  EN  G +  +T           +   V+L 
Sbjct: 276 ---TKVIRLEQNYRSSQNILSVASNLISNNENRVGKTLTTTM---------EEGDLVKLN 323

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                + +                          A  I+  I   I           +  
Sbjct: 324 CFKNGKDE--------------------------AIGISDEIEKNIK----------KKF 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              ++ +LVR    T               +           +   IKD +A  R I  +
Sbjct: 348 SFNNVAILVRAIFQTREFEERF----LKIGMPYRILGGTKFYERAEIKDCVAYLRLIHQE 403

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHV 484
           +DDL+F  ++ +P  +  +  I  +    +     +    ++     + K          
Sbjct: 404 KDDLAFERIVNNPKRSIGDTTIKLVHEFGKKNNLCLENAAKQMIEENLIKPKTKISLNFF 463

Query: 485 IKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEFLNFTLRN 539
           +K + +  +    +  +       +L          ++        ++ + E L      
Sbjct: 464 LKSLSKWRNDIKIKKINHIKLMQTVLDESGYSSMLKNKKDLDNESRLENIKELLTAMKEF 523

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +         L S LE            +  ++ +MT+H AKGLE   VFL      +F 
Sbjct: 524 DN--------LESFLEHVSLATSVDQEWDGEKINMMTMHAAKGLEFDAVFLPGWEEGLFP 575

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                  I+   ++  EE  RL YVG+TRA 
Sbjct: 576 HQKS--------------------------------IEEKGQNGLEEERRLAYVGITRAK 603

Query: 660 DQLIIC 665
            + II 
Sbjct: 604 KKAIIS 609


>gi|291613986|ref|YP_003524143.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
 gi|291584098|gb|ADE11756.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1]
          Length = 662

 Score =  267 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 99/695 (14%), Positives = 203/695 (29%), Gaps = 122/695 (17%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                   + K ++     G       A  +Q   +   +       S F          
Sbjct: 61  AANEMRERVGKIMNGRDAKGMTISTFHALGMQILREDGPLLGYKKQFSIFDSADTGKIIS 120

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            ++     ++    +  +   +  F+      +  +  +           L A Y+E  +
Sbjct: 121 ELLGSPDKQEIRTAQSVMSNWKAAFLTPEQAGSLAENEEQQR-----LALLYARYQETLR 175

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               +DF+DLI    +L K  + +     +      ++LIDE QDT+  Q+++++ L   
Sbjct: 176 AYQSVDFDDLIRLPVELFKTHEEA---HQRWQHRFRYLLIDEYQDTNDCQYQMMKLLAG- 231

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +  VGD+ Q+IY++ GA    +   +    +          +I+L  
Sbjct: 232 ---------PRAAVTVVGDDDQAIYAWRGASTANLQNLQNDYPQ--------LRVIKLEQ 274

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS+  IL   + +          +  S           G    V              
Sbjct: 275 NYRSSQRILQSANHLIKNNTKLFEKNLWSEHG-------PGDPVRVF------------- 314

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                                  A  +            + ++  +   +  D  +L R 
Sbjct: 315 ---------------AAKDEENEAESVVLR---------LLAHKFENNTRFSDYAILYRS 350

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + +     R  K    +    +      DH  IKDL A  R I + +DD +F+  + 
Sbjct: 351 NHLSRVFEEQLRTHK----VPYSVSGGTSFFDHAEIKDLTAYLRLIANPDDDPAFIRAIT 406

Query: 443 SPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHVIKYIHELIHIA 495
           +P        + K+         +++E   + A                 ++I+ +   A
Sbjct: 407 TPKRGIGNSTLEKLASYAGSRNVSLFEAAFESAMAHQLQPRQHEDLLTFCQFINRMQARA 466

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLDEFLNFTLRNEQNSYSSLQELI 551
           +    ++    +L A                +     + +F+ +  R  +    ++  + 
Sbjct: 467 EKEPCNEVLNDLLSAIDYEAWLFDSHEPRQAENKWKNVQDFVGWMNRKSEADEKTMIAMT 526

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             +        R      + V + T+H AKGLE   VFL+     +  H+          
Sbjct: 527 QLIALLNLLESRDQET--DAVSLSTLHAAKGLEFGHVFLIGVEEGILPHERS-------- 576

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                            EE  RL+YVG+TRA   L I   +   
Sbjct: 577 ---------------------------EAPEQIEEERRLMYVGITRAQRSLQISYCTRRK 609

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             K+         + +    D     +    +   
Sbjct: 610 RGKEFAGCDPSRFIAELPQADIVYTGVVTAGNAPA 644


>gi|152991980|ref|YP_001357701.1| ATP-dependent DNA helicase UvrD [Sulfurovum sp. NBC37-1]
 gi|151423841|dbj|BAF71344.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp.
           NBC37-1]
          Length = 688

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 101/591 (17%), Positives = 203/591 (34%), Gaps = 124/591 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y+   ++N ++DF+DL++ T  +L + +    +R +      +I++DE QDT+
Sbjct: 167 VARIYEQYQANIEENNLVDFDDLLMLTYRILDENEE---LRRETSNRYKYIMVDEYQDTN 223

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+ ++  L  +             L  VGD+ QSIY + GA  + +L      +    
Sbjct: 224 ELQFRLLEHLCSE----------HNNLCVVGDDDQSIYGWRGANIRNILEFADHFEN--- 270

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   ++L  ++RST  IL   + +        G    S                  
Sbjct: 271 -----TKTVKLETNYRSTEPILKAANALIEHNSTRLGKKLVSHK---------------- 309

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          ++       D   +       A+ IA+ I  +I +          
Sbjct: 310 ------------GEGKEIKLLHSLDESME-------AKAIAHEIHELIDSG--------- 341

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   +I VL R    +  +            ++          +   IKD+++  R + 
Sbjct: 342 -VDPDEIAVLYRINALSRSLEEGF----TKEGLAFKLIGGMRFYERAEIKDIISYFRVLT 396

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQKFANCGIS--------- 479
           +  DD S + ++  P     +  I K+         ++YEYI++ +N  +          
Sbjct: 397 NPHDDFSLIRIINKPKRGIGKASIEKLQKAAFDSHLSLYEYIEQSSNGKLPNVVSKKVSA 456

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLR 538
              ++++ I  L       S  +F TL     K +  + +   G + I  +DEF  +   
Sbjct: 457 ALANLLEDIEVLREE-MQTSLGNFITLFEERIKLKDHYAAMVDGFDRILNIDEFYGYFRD 515

Query: 539 NEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
               +   +L+E ++++       +       N + IM++H AKGLE   +F++    + 
Sbjct: 516 AVIKNPDLTLEEFLNDISLQSDQDQIE----ENAITIMSIHAAKGLEFEHLFVIGLEEEF 571

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                         + S  EE  RL YV +TR
Sbjct: 572 FP-------------------------------------LLGEGSNMEEERRLGYVAITR 594

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           A   L +C   +   + +         + ++    +   KI    +  K +
Sbjct: 595 AKSDLTLCYVDSRFYKGRRKMIDKSRFLGEAGLIQDASLKITKQAAFKKGD 645


>gi|315585865|gb|ADU40246.1| excision endonuclease subunit UvrD [Helicobacter pylori 35A]
          Length = 681

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/572 (16%), Positives = 183/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIK 486
                 +L  P     +     I +    E   + E ++      K            I 
Sbjct: 388 RFFIRRVLNKPSRGLGKITQELIFSLLDGEGLNLEEALKLGVFKGKLNPKNEYALNKFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVERFCARFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESILDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAKLIKQDNPP 619


>gi|163746115|ref|ZP_02153474.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45]
 gi|161380860|gb|EDQ05270.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45]
          Length = 805

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 103/577 (17%), Positives = 178/577 (30%), Gaps = 142/577 (24%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + A Y+    +    DF DL+++   + +       +  +  +   +IL+DE QDT++ 
Sbjct: 195 EIYAQYQRRLIELNATDFGDLLLHMVTIFQAHPD---VLAQYQRWFKYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +            + +  VGD+ QSIY + GAE   +LR +          
Sbjct: 252 QYLWLRLLAQ----------GHKNICCVGDDDQSIYGWRGAEVGNILRFETDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +++L  ++RST  IL     V +  E   G +                     LW
Sbjct: 296 --GAHVVKLEQNYRSTPHILAAASGVIAGNEGRLGKT---------------------LW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +   ++     ++D   +       AR I   I +                
Sbjct: 333 -------TEETEGEKVRLIGHWDGEEE-------ARWIGDEIESAQRGTRGLD-----PF 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + L I+D MA  R + S 
Sbjct: 374 SLDDMAILVRASHQMRAFEDRF----LTIGLPYKVIGGPRFYERLEIRDAMAYFRVVTSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
           +DDL+F  ++ +P     +    KI    R     + E              G ++ + +
Sbjct: 430 DDDLAFERIVNTPKRGLGDKAQQKIQRTARDHGVNLVEGARILLAHDGIGGKGGAQLRLL 489

Query: 485 IKYIHELIHIAQ---------------------------FCSPHDFFTLILGAKKGRQQF 517
           ++ I     +                               S  +   +IL        +
Sbjct: 490 VEGIDRWSSMLHGPRIEISEDDSVLDDGAVPLRVDYGPPEVSHVELAEMILDESGYTGMW 549

Query: 518 ISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
            +    E    ++ L E +      E         L   LE     +      +  +V I
Sbjct: 550 QNDKTPEAPGRLENLKELVKALEGFEN--------LQGFLEHVSLIMDNEQEGDGEKVSI 601

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE P+VFL      +F  +       +                         
Sbjct: 602 MTLHAAKGLEFPMVFLPGWEDGLFPSQRSMDESGI------------------------- 636

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                     EE  RL YVG+TRA     I   +N  
Sbjct: 637 -------KGLEEERRLAYVGITRAEQICTISFAANRR 666


>gi|88797135|ref|ZP_01112725.1| DNA helicase II [Reinekea sp. MED297]
 gi|88780004|gb|EAR11189.1| DNA helicase II [Reinekea sp. MED297]
          Length = 720

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 112/751 (14%), Positives = 241/751 (32%), Gaps = 134/751 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  W +     S  +             +  + + L +A         
Sbjct: 29  GAGSGKTRVLTHRIGWLIAAGLASPYSVLAVTFTNKAAREMKSRVEALLEAPSQGLWIGT 88

Query: 66  FSLLSSFFLT------QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-K 118
           F  L+   L       +     + + + +  +    +  ++    D     + ++    +
Sbjct: 89  FHGLAHRLLKAHWQQAKLPQHFQVMDSDDQLRLVKRIINEMNIEDDRIQPKQVQWFINGQ 148

Query: 119 MFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +   A+  L +          +   YE   +++ ++DF +L++  ++L         +
Sbjct: 149 KDEGRRAAYVLTQGDWYQETLKDIYVRYEALCQQSGLVDFGELLLRAHELWLNEPS---V 205

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    H+L+DE QD + IQ+  ++ L  D             L  VGD+ QSIY +
Sbjct: 206 LEHYQSRFTHVLVDEFQDINTIQYAWLKVLVGDRLS----------LTIVGDDDQSIYGW 255

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +   +   ++          +I L  ++RST  IL+  + V    +   G + 
Sbjct: 256 RGAKVENIQSFEHDFER--------TEVIRLEQNYRSTETILSAANAVIDNNQGRLGKN- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +     + F+   +       AR I
Sbjct: 307 --------------------LW-------TEGAKGEPIRLYAGFNEQDE-------ARFI 332

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  ++ +I             +   +I +L R    + ++      L+    I       
Sbjct: 333 ADEMNRLIEGG----------VNPTEIALLYRSNAQSRVLEEALIHLQ----IPYRIYGG 378

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               + + I++ +A  R IL+++DD S   ++  P           +    R +  +++ 
Sbjct: 379 VRFYERMEIRNSVAYLRLILNRQDDASMERIMNVPPRGIGNKTFETLRVLARDQGCSLWV 438

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIA-QFCSPHDFFTLILGAKK---GRQQFI 518
             Q        A    +   + ++ + +L           D    +  A       ++  
Sbjct: 439 AAQMALENGVLAKRAANALANFVQLMTDLEETVLDKEDLGDIVKFVNDASGMIDYHEKEK 498

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSAN--HNEVRIM 575
              G   ++ L+E ++       +  Y S+ EL++              A+   + V +M
Sbjct: 499 GEKGRARVENLNELISAAQSYASDQDYDSIAELLAMFISEASLDAGDAQADEFEDSVNLM 558

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE   VFL      +F HK                                  
Sbjct: 559 TLHSAKGLEFDHVFLAGLEENLFPHKMSMGDPGG-------------------------- 592

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    +E  RL YVG+TRA  +L +    +          T    V +        
Sbjct: 593 --------LQEERRLAYVGITRARKELTLTYAESRRLYGSETFNTVSRFVREIPAELLNE 644

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
            +++ + +   D  +  + +      +  +R
Sbjct: 645 VRLRASVARPVDFGLQQQVAIEDAGLSIGQR 675


>gi|251787838|ref|YP_003002559.1| DNA-dependent helicase II [Dickeya zeae Ech1591]
 gi|247536459|gb|ACT05080.1| DNA helicase II [Dickeya zeae Ech1591]
          Length = 720

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 111/700 (15%), Positives = 217/700 (31%), Gaps = 144/700 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L     S  +             +  +   L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTNKAAAEMRHRIDQLLGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D +++L+  +     +             
Sbjct: 90  FHGLAHRLL------RAHHLDAGLPQDFQILDSEDQLRLLKRLIKALNLDEKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINGKKDEGLRPQHIDSYGNPVEQTWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I        N+IL+DE QDT+ IQ+  IR L  D             +  VGD+ 
Sbjct: 204 PH---ILQHYRDRFNNILVDEFQDTNRIQYAWIRLLAGD----------SAKVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + +    R             + I L  ++RSTA+IL   + + +   +
Sbjct: 251 QSIYGWRGAQVENIQHFLRDF--------NDVTTIRLEQNYRSTANILNAANALIAHNGD 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RLGKN---------------------LW-------TDGIEGEPISLYCAFNELDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR +   I                     +  +L R    + ++            + 
Sbjct: 330 --ARFVVNRIKVWQEAGGAL----------SECAILYRSNAQSRVLEEAL----LQQSLP 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     +   IKD ++  R + ++ DD +F  ++ +P     +  +  +    R  
Sbjct: 374 YRIYGGMRFFERQEIKDALSYLRLLTNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDR 433

Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             T+++  +             +  Q  ++ +  L         H     ++        
Sbjct: 434 QLTLWQATRALLQEKVLAGRAAAALQRFLELVDALASDTADLPLHVQTDRVIRDSGLWSM 493

Query: 517 FISRFGN---EVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
           +    G      ++ L+E +  T +   Q+    L  L + L        +    A  + 
Sbjct: 494 YEQEKGEKGQTRVENLEELVTATRQFSYQDEDQDLLPLQAFLSHAALEAGEGQADAYQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P VF+V     +F  +                              
Sbjct: 554 VQLMTLHSAKGLEFPQVFVVGMEEGMFPSQMSLDEGG----------------------- 590

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        EE  RL YVG+TRA  +L +    +  
Sbjct: 591 -----------RLEEERRLAYVGVTRAMQKLTLTYAESRR 619


>gi|91069901|gb|ABE10830.1| UvrD/REP helicase [uncultured Prochlorococcus marinus clone
           ASNC2150]
          Length = 802

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/569 (17%), Positives = 191/569 (33%), Gaps = 96/569 (16%)

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSL-TEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
           +R    +   HIL+DE QDT+  Q+E+I+ +   +    K  +   R++F VGD  QSIY
Sbjct: 245 VRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWEDRSIFVVGDADQSIY 304

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF  A+ + ++  +   +    +   K S+I+L  ++RS+++IL   + +          
Sbjct: 305 SFRAADFRILIGFQEDFKTSIND-DTKSSLIKLEENYRSSSNILDAANSLIENNSERIDK 363

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              +T                                +  +  S  D + +       A 
Sbjct: 364 VLKATK----------------------------EKGELLTLLSCDDEISE-------AE 388

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I ++        N   +    K+  +L R R  + ++          ++I     
Sbjct: 389 AITNKIKSL--------NNYNQNPIWKNFAILYRTRAQSRVLEESL----VRWRIPYTIF 436

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                 D   IKD +A  + +++  D++S + ++  P     +  I K+          +
Sbjct: 437 GGLRFYDRREIKDAIAYLKVLVNSSDNVSLLRIINVPRRGIGKTTIQKLNELSNRLNIPL 496

Query: 467 YEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E +    +                + +++L+   +   P     LIL         +S 
Sbjct: 497 WEVLNDKQSLEETIGRSSKGINKFTEVMNDLLCYLENSGPAQLLQLILEKSGYLSDLLSS 556

Query: 521 FGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMT 576
              E  D    L E +N   + E+ + S   ++   L     T        N N V +MT
Sbjct: 557 GTEESEDRRNNLQELINAATQYEEETESG--DVEGFLSTAALTTDNDTKKNNPNSVTLMT 614

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE   VF+      +F          +                           
Sbjct: 615 LHNSKGLEFQNVFITGLEQGLFPSHRSIDTPSL--------------------------- 647

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                   EE  RL YVG+TRA +++ +             + T   +       D    
Sbjct: 648 -------LEEERRLCYVGITRAKERVFLSHARERRLWGGMREATIPSIFLSEIPEDLIDG 700

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725
           ++  T   +    +  +  T    N P E
Sbjct: 701 ELPQTGGASIRRDLHLDRLTRVDRNNPNE 729


>gi|148257387|ref|YP_001241972.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1]
 gi|146409560|gb|ABQ38066.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1]
          Length = 855

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 111/699 (15%), Positives = 204/699 (29%), Gaps = 144/699 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+E  K     DF DL++    L ++      +  +       IL+DE QDT++ Q
Sbjct: 206 LYASYQERLKILNAADFGDLLLENIRLFREHPD---VLRQYQSRFKFILVDEYQDTNVAQ 262

Query: 193 WEVIRSLTE----------------------------------DFFVGKNTHSSPRTLFA 218
           +  +R L++                                  D         +P+ +  
Sbjct: 263 YLWLRLLSQAPSSGSSLPGSPRPSIASSEDGSPALDAARRPGDDDKSVAVAGPAPKNICC 322

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD+ QSIY + GAE   +LR +               +I L  ++RSTA IL     + 
Sbjct: 323 VGDDDQSIYGWRGAEVDNILRFEHDFP--------GAKVIRLERNYRSTAHILAAASHLI 374

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +  E   G +                                    ++ + T  +DS  +
Sbjct: 375 THNEGRLGKTL----------------------------RTEDVEGEKVTVTGAWDSEEE 406

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  AR I   I  +                  DI +LVR              L  
Sbjct: 407 -------ARGIGEEIEELQRKGEPL----------NDIAILVRASYQMREFEDRFVTL-- 447

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457
              +           +   I+D +A  R I S  DDL+F  ++  P     +  +  +  
Sbjct: 448 --GLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIINVPKRGLGDATVQMLHD 505

Query: 458 TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
             R     ++E  +      +         + +I          +     +   ++L   
Sbjct: 506 HARKRRIPLFEAARAVVETDELKPKARGSLRGLILQFERWRTQREVTPHTELAEIVLDES 565

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
              + +      +    LD         E+      + L   LE     + R  +A+ + 
Sbjct: 566 GYTEMWQKDRSADAAGRLDNLKELIRSMEE-----FENLHGFLEHISLVMDREGAADEDA 620

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+H+AKGLE   VFL      +F  +                              
Sbjct: 621 VSLMTLHSAKGLEFDNVFLPGWEEGLFPSQRTLD-------------------------- 654

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                    ++  EE  RL +VG+TRA  +  I   +N               + +   +
Sbjct: 655 ------EQGRAGLEEERRLAHVGLTRARRRAKIYFATNRRIHGTWTTTIPSRFLDELPAD 708

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPE-----NTPLEREETIKQLMDEQKIPKKL-FS 745
              + + K  +              +        +TP  +    ++              
Sbjct: 709 SVEITESKGGSGWGGAGGYGPSRFDNVESFGSSYSTPGWQRAQARRPASRGASEGGFQEE 768

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
           P      +P+  +      + K    ++  +    + G 
Sbjct: 769 PSPFAGRDPFGGSFGGPFGRNKRGPLTIEGELVAKSTGT 807


>gi|256844935|ref|ZP_05550393.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_36A2]
 gi|256718494|gb|EEU32049.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_36A2]
          Length = 737

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/546 (19%), Positives = 182/546 (33%), Gaps = 117/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y     ++  +DF D+++NT  LL+K +    I  K+  +  +I+IDE QDT+ +
Sbjct: 169 EVYDKYNRVLLESNAMDFSDILLNTYKLLQKPE----ILEKVQNKYKYIMIDEYQDTNNL 224

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  VGDE QSIY F GA    +L  +          
Sbjct: 225 QYKIIDLIAR----------KSSNLCVVGDENQSIYGFRGANILNILNFETNYNN----- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RST  IL   +++    ++++                        LW
Sbjct: 270 ---AKIIKLEENYRSTTTILDAANELIKNNKSSKDKK---------------------LW 305

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              +  ++  + S       RI   I                 I
Sbjct: 306 -------TQNGKGDLIKVLACDNARDEVS-------RIIEIIKENHQNG----------I 341

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D+ +L R    + +           Y I               IKD++A    I++ 
Sbjct: 342 AYRDMTILYRTNAQSRVFEEGL----LRYSIPHKVFGGISFYSRAEIKDIIAYLSIIVNP 397

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQHV 484
           +D+L+   ++  P     E  + KI    R     + E +               K   +
Sbjct: 398 QDELNLQRIINVPKRKVGEKGVEKIIAYARENNLNLLEALSHIKEISGLTAVGKEKLLEM 457

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN 542
              I EL  ++   +       ++   K        +      I+ +DEF N  L  E  
Sbjct: 458 YDIIKELKDLSYTETASYIVQTLIDKIKYIDYIKENYDDAEARIENIDEFKNSILELE-- 515

Query: 543 SYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +      L   LE     +         + V++MT+H +KGLE P+VFLV   +++F   
Sbjct: 516 NVVGELRLNEYLENVSLISATDDLEEKSDYVKLMTIHNSKGLEFPIVFLVGFENEIFPGS 575

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                 ++   EE  RL YV +TRA  +
Sbjct: 576 ----------------------------------RAMFEEKEMEEERRLCYVALTRAEKK 601

Query: 662 LIICKH 667
           L +   
Sbjct: 602 LYLSHA 607


>gi|134295512|ref|YP_001119247.1| ATP-dependent DNA helicase UvrD [Burkholderia vietnamiensis G4]
 gi|134138669|gb|ABO54412.1| ATP-dependent DNA helicase UvrD [Burkholderia vietnamiensis G4]
          Length = 787

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 118/752 (15%), Positives = 228/752 (30%), Gaps = 169/752 (22%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRTHWRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +        +T         L   Y++  ++  V+DF +L++   +LL      A +R  
Sbjct: 150 QGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L            +   +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFRHILVDEFQDTNKLQYAWLKMLAG----------AGNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   +++ S   +  G +  + 
Sbjct: 257 NVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANQLISNNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + S+ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EASTDAQEAGWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++I T           +   +I VL R    +  I            I          
Sbjct: 334 IRSLINTG----------MSRSEIAVLYRSNAQSRAIEHTL----MTSGIPYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +FV ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFVRVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
                  +        I ++    +  S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVTGKAGTSLGAFATLIAKMRAETEQMSLPETVEYVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDAPARAIPLRAGAIAAPALRAEADDPSVDVLDPAPLDDPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH +KGLE   VF+      +F H++ 
Sbjct: 560 DTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHASKGLEFSAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 V----------------------------------LESDGLEEERRLMYVAITRAKERLY 645

Query: 664 IC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI--KLTNSINKDEWIAYE 713
           +           +  +   +        ++       E   +   +  N+    +W A  
Sbjct: 646 LSFAQSRMLHGQTRYNVRSRFFDELPEHVLKWLTPKVEAGSRWGGRADNAGWGRDWFARP 705

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
              H  +         +    D+Q+     F 
Sbjct: 706 GGGHREQIVDAAVSAPLPAFADKQRAADTGFR 737


>gi|212710202|ref|ZP_03318330.1| hypothetical protein PROVALCAL_01261 [Providencia alcalifaciens DSM
           30120]
 gi|212687201|gb|EEB46729.1| hypothetical protein PROVALCAL_01261 [Providencia alcalifaciens DSM
           30120]
          Length = 675

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/639 (16%), Positives = 210/639 (32%), Gaps = 120/639 (18%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             +T ++ ++  DL ++L  +   +               T      A+     YE   K
Sbjct: 118 KELTFDLLEEDKDLLQQLISAISNWKNDLISPPQVIGQAKTEKEHHFAE-CYRRYELHLK 176

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              VLDF+DLI     LL   +    +R +  Q+I ++L+DE QDT+  Q+++++ L   
Sbjct: 177 SCNVLDFDDLISKPTLLLYHNEE---VRERWQQKIRYLLVDEYQDTNTSQYQLVKLLVGQ 233

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                           VGD+ QSIYS+ GA P+ ++   +   K         ++I+L  
Sbjct: 234 ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPK--------LNVIKLEQ 275

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS+  IL   + + +   +       S                               
Sbjct: 276 NYRSSGRILKAANILIANNPHVFDKKLFS------------------------------- 304

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
              +  + +    L   +     A R+   I  +I    I         Q KD  +L R 
Sbjct: 305 ---ELGYGAPLKVLTANN-EDHEAERV---IGELIAHHFI------NKTQYKDYAILYRG 351

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + +   +        +I    +          IKDL+A  R + + EDD +F+ ++ 
Sbjct: 352 NHQSRIFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPEDDSAFLRIVN 407

Query: 443 SPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG--ISKFQHVIKYIHELIH---IAQ 496
           +P        I K+        +++Y+             K    ++     +       
Sbjct: 408 TPRREIGPKTIQKLGEWANQRGKSLYQASFDLGLEQTLTGKGLEALQRFTHWMDGIVKTS 467

Query: 497 FCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN----EQNSYSSL 547
              P      +L                +     +  +++   +        E N   +L
Sbjct: 468 EREPLIAVRDLLREMDYESWLYETSTSTKAAEMRMKNVNQLFTWMSEMIEGDELNDPMTL 527

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            ++++         +     + ++V++MT+H +KGLE P VFLV     +  H+      
Sbjct: 528 NQVVTRFTLRDMMERGEDDEDSDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID-- 585

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                            ++  +E  RL YVG+TRA  +L     
Sbjct: 586 ---------------------------------ENNIDEERRLAYVGITRAQRELFFTHS 612

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                  +  +      + +   +D   ++ +   +  +
Sbjct: 613 RERRQYGELIRPELSRFLMELPQDDLVWEQQRKVVTAEE 651


>gi|78211730|ref|YP_380509.1| ATP-dependent DNA helicase Rep [Synechococcus sp. CC9605]
 gi|78196189|gb|ABB33954.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9605]
          Length = 796

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/630 (16%), Positives = 203/630 (32%), Gaps = 99/630 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y +A   N      D        ++    +  +R    +   H+L+DE QD
Sbjct: 202 KLTADVYRRYRKALAANNA---LDFDDLLLLPVQLLQQNDQVRSYWHRRFRHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++I+ L  D    ++    S R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYDLIKLLVTDGKDPQDVEDWSGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +A +     ++++L  ++RSTA IL   + + +            T              
Sbjct: 319 QAPD-DSTQTMVKLEENYRSTATILEAANALIANNSERIDKVLRPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  + T   D + +       A  + + +  M          
Sbjct: 365 ---------------GEGELITLTRCDDEIAE-------AEAVVHRMRTM--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ VL R    +  I          + I  +        D   IKDL+A  R
Sbjct: 395 ANPELSWGDMAVLYRTNAQSRAIEESL----VRWGIPYIVVGGLRFYDRREIKDLLAYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  I ++    ++    ++      E ++        
Sbjct: 451 LLVNPADTVSLLRVINVPKRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAK 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                   +++L   ++  +P +    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCDLVNDLKARSRDVAPSELIQQVMEKSGYVSELIADGTDEAEERRRNLQELVNAA 570

Query: 537 LRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+ ++ +    L+  ++          +      + V +MT+H++KGLE PVV LV    
Sbjct: 571 LQYQEENDEGYLEGFLATAALSSDADSKD--TAADRVTLMTLHSSKGLEFPVVCLVGLEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L I             +     +             I  T           +  
Sbjct: 655 TRAKERLFISHACERRLWGGMREAAVPSVFLSELPEALIQGDIPQTGGAALRRERRLDRL 714

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFS 745
           T    + P        +       P + + 
Sbjct: 715 TRVDRDKPSSAPANAVRRRQAGPAPGRSWQ 744


>gi|294660411|ref|NP_853162.2| DNA helicase II [Mycoplasma gallisepticum str. R(low)]
 gi|284812070|gb|AAP56730.2| DNA helicase II [Mycoplasma gallisepticum str. R(low)]
 gi|284930644|gb|ADC30583.1| DNA helicase II [Mycoplasma gallisepticum str. R(high)]
          Length = 751

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/665 (15%), Positives = 198/665 (29%), Gaps = 124/665 (18%)

Query: 29  SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT----PQKNI 84
              + + +  +       +     L          ++  L+     +QK+        + 
Sbjct: 86  RTFHGFCAQVLR----EEVNNVDRLNDRFNILDEVDQAKLIEDLLKSQKYEYYYSQYTDF 141

Query: 85  ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
              ++     D K       +      ++     +   T   +         YE+A K+ 
Sbjct: 142 KKNKVMSIINDAKTYNLDVAEFLASDLNKLGEDHIL--TPNLVQPLSNFYHDYEKALKEL 199

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             +DF DL+    +L     +   I  K       IL+DE QD + IQ+++++ L     
Sbjct: 200 NAIDFNDLLNIAYNLFLNDPI---ILKKWQNRYEAILVDEFQDANEIQYKIVKLL----- 251

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                         VGD  QSIY + GA  +     +               +  L  ++
Sbjct: 252 -----REKNNNFLFVGDPDQSIYGWRGANSEIGDSIRFDF--------NDLVVKYLTQNY 298

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS   IL + +    +  +    S  S              G   +W    +        
Sbjct: 299 RSKQSILNLANDAIKMNNSRYFKSLLSHDLTDL--------GPKPIWINFSNIEYQN--- 347

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                                 R +   I  ++ +         +     D  +L R   
Sbjct: 348 ----------------------RFVMDKIKELVAS---------KQYTYGDFAILYRTNF 376

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            +  +  L +      +I       +       IKDL+   + +    +D++F  ++ +P
Sbjct: 377 SSVSLERLIKE----NRIPYEIFGGYKFFLRKEIKDLIGYLKLV-DTNNDIAFDRIINTP 431

Query: 445 LFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK-----FQHVIKYIHELIHIAQFC 498
                +  I  I      ++ T YE +       I        Q+  K I +L       
Sbjct: 432 RRMIGDTSIEIIKELANKKSITEYEALDYLDESNIKANVKKSAQNFKKMIEDLRANQGNW 491

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS------LQELIS 552
           S +     I+                  D ++EF++F  + E+   +       + + I 
Sbjct: 492 SVYQTINEIIKRINYYDYL---NEPTKHDSVNEFIDFLNKYEKEYENDFGTKLTINDFIQ 548

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            L           + N N +++MT+H+AKGLE   VF+++    +               
Sbjct: 549 NLALEGDLDNNQPNHNKNALKLMTIHSAKGLEFKNVFVINMNENILPSSRS--------- 599

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                 +     K+   E  R++YV  TRA   L +C + +   
Sbjct: 600 ----------------------IAATNNKAKLAEERRIVYVAYTRAKHNLWLCSNQDYDA 637

Query: 673 EKKSN 677
             K  
Sbjct: 638 RTKEP 642


>gi|90415401|ref|ZP_01223335.1| DNA helicase II [marine gamma proteobacterium HTCC2207]
 gi|90332724|gb|EAS47894.1| DNA helicase II [marine gamma proteobacterium HTCC2207]
          Length = 723

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 120/722 (16%), Positives = 229/722 (31%), Gaps = 136/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L    +S  +             + ++   L   S        
Sbjct: 30  GAGSGKTRVLVHRIAWKLQVDNLSPYSILAVTFTNKAAREMRERIDELMGMSLRGMWVGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF----------- 114
           F  L+   L   +   K     +I      L+  L K     + + ++            
Sbjct: 90  FHGLAHRLLKAHWKDVKLPENFQILDSDDQLR--LVKRVMRSMDLDEQRWPPKQAQWWIN 147

Query: 115 -------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                      + ++    +     +   YEE   +  V+DF +L++   +L K+     
Sbjct: 148 GQKDEGLRAAHIQETGDPHMATMLRIYREYEEVCNRLGVIDFAELLLRALELWKEHPA-- 205

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   HIL+DE QDT+ +Q+  +R L                + AVGD+ QSIY
Sbjct: 206 -VLDHYQQRFQHILVDEFQDTNAVQYAWLRILAGKVSG----------VTAVGDDDQSIY 254

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + +L                   ++L  ++RST++IL   + V S      G 
Sbjct: 255 GWRGAKVENIL--------HYEGHFSDTHTVKLEQNYRSTSNILNAANAVISKNAERLGK 306

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           S                     LW             +  +  + F+   +       AR
Sbjct: 307 S---------------------LW-------TDSGEGEPIALYAAFNEHDE-------AR 331

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            IA  + + +    +            D  +L R    +     +         I     
Sbjct: 332 YIADRLQSWVNQGNLRE----------DSAILYRSNAQSR----VLEAALLQADIPYRIY 377

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                 + L IK+ ++  R +++  DD++F  ++  P     +  +  I    R E  ++
Sbjct: 378 GGQRFYERLEIKNALSYLRLMMNCHDDVAFERVVNVPPRGIGDRTVETIRALAREEQISM 437

Query: 467 YEYIQKFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +   +K         +        ++ I+E+         ++     +      +     
Sbjct: 438 WRASEKIVTEKRMPGRAINAVAVFLELINEMSGQLDELELYEQAENAIQRSGLIEMHKRE 497

Query: 521 FGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
            G      ++ L+E +      E      L  L   L+Q       R    + + V++MT
Sbjct: 498 KGERGQARVENLEELVGACRNFEAED-KDLPILPQFLDQVALDSGDRQADEDQDAVQLMT 556

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VF+      +F HK                                   
Sbjct: 557 LHSAKGLEFPLVFIAGVEENLFPHKMSLDEPG---------------------------- 588

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                   EE  RL YVG+TRA  +L +    + S     +  +    V D         
Sbjct: 589 ------RLEEERRLAYVGITRAMQKLYLTFAESRSIYGTESFNSVSRFVRDIPKEVIEEV 642

Query: 697 KI 698
           ++
Sbjct: 643 RL 644


>gi|86742478|ref|YP_482878.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569340|gb|ABD13149.1| UvrD/REP helicase [Frankia sp. CcI3]
          Length = 1130

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 131/1040 (12%), Positives = 274/1040 (26%), Gaps = 187/1040 (17%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R GL  +                  S   K  +L+   G       A   + +       
Sbjct: 164  RLGLEPDLQLISGAARYQLAARVARSHGGKVEALTRSLGALVGELVALDAEMSEHLVDPA 223

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            +  +   +         ++    +                              +   + 
Sbjct: 224  DLVAFDGALLAEIDAALRRAEQRRGTRGVR---------------------RELRRCAAA 262

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                     L A Y  A+++  VLDF D +     L    +    +          +L+D
Sbjct: 263  ARGRRELAALVAEYRAARRERDVLDFGDQVTCAARLA---ETMPEVGRAERARAAVVLLD 319

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS+ Q  ++  L                + AVGD  Q+IY + GA    +      
Sbjct: 320  EYQDTSVAQRRMLTGLFG----------GGHPVTAVGDPCQAIYGWRGASVANLDHFPTH 369

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                    G   ++ EL ++ RS   +L + + V +       +                
Sbjct: 370  FP---GADGTPAAVYELSVNQRSGGRLLRLANTVAAQLRARHRV---------------- 410

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                V+L  +       +                   S +     IA  +  ++   T  
Sbjct: 411  ----VELRPRPDVADQGEAVVALHV------------SWADEVAWIAGQLRRVVDAGTA- 453

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                       DI VLVR R D P +    +       + V       L     + +++A
Sbjct: 454  ---------PGDIAVLVRARGDIPALFTAMQA----AGLPVEVVGLTGLLIVPEVAEIVA 500

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--------------------- 462
            +   + S   + + V +L  P       D+  +     E                     
Sbjct: 501  MLEVLDSPTANAALVRLLTGPRVRLGPRDLAALGRHAREAARVPDPVGDPDLPGRSDPLA 560

Query: 463  --------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                          ++ + +   + +  G ++ + +   I  L          D    ++
Sbjct: 561  EAVADVDPADVVALSDVLDDPGPQMSAPGRARVRRLAAEIAALRGHVGEG-LLDLLHRVV 619

Query: 509  GAKKGRQQFISRF---GNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRA 564
                   +  +          + +  FL+      + +  +SL   +  L       +  
Sbjct: 620  ATIGLDVELTATEVAVRARRQENVAAFLDVAAGFTDPDGTNSLPAFLGFLRAAREHERGL 679

Query: 565  H---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH-----KHIKKMHIMPSLNDDP 616
                 +  + + +MT+H +KGLE  VV + +  S+VF       +      ++P      
Sbjct: 680  DVAGPSGADAIALMTMHRSKGLEWEVVAVPNLTSKVFPDLTVRDQWTTSPGVLPIPLRGD 739

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
               +      +    +       ++  + E  RL YV +TRA   L    H     +K  
Sbjct: 740  ADDLPAFTVCAEKAALDAFRADARQYAEREERRLAYVAVTRAKSLLFASGHWWGPTQKTP 799

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
               + +                       +    A           P E E   ++L   
Sbjct: 800  RGASVFLDELAEHARTGGGLVDVWAPEPAERTNPALATPERFAWPIPYEPEPYARRLAAA 859

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKG------------KTNLESLLSDNQTFNRGL 784
            + +  +L +      +      P      G                  LL++ +      
Sbjct: 860  EGVMARLAALSVPGASAEPAGEPFVDGPAGMTAAERVLLAELDREARLLLAEERAARLAR 919

Query: 785  -----------------------IIHKLLQVIFTLP--EHKRKNFITSYCTKNAKLWPAK 819
                                      +L++ +   P    +R     ++  +        
Sbjct: 920  TDVALPASLTASQIVRLRADPEAFARELVRPLPRRPVAAARRGTRFHAWVEEIFDYRALI 979

Query: 820  EYKNLLLSITRLLENPMMTTAMSC------DSYSEVSVSGKINCPKKDIIISGRIDQIS- 872
            + ++L  +    L +  + +           +    ++           I+ GRID +  
Sbjct: 980  DTEDLPGAADAELTDDDLRSLQQAFLRTAYGARRPFAIEAPFELRLAGRIVRGRIDAVYD 1039

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEP 930
            +      + ++KT      +          QL IY              +    +YV   
Sbjct: 1040 LGGGRWEVVDWKTGRSDADD---------LQLGIYRLAWARLRGVDPSAVDAAFLYVRTG 1090

Query: 931  KVFIIPQNKLNKAFAEISTK 950
             V   P     +  A++   
Sbjct: 1091 AVVR-PPTLSEEELADLLAS 1109


>gi|119717815|ref|YP_924780.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614]
 gi|119538476|gb|ABL83093.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614]
          Length = 797

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 109/724 (15%), Positives = 212/724 (29%), Gaps = 127/724 (17%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           +++ K       L    ++  ++RD     K  ++              Y+   ++   L
Sbjct: 147 DLDPKRYQPGALLHWVSNQKNELRDPDEATKDARN--HLEETYAAAYTTYQRRLRQANAL 204

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE---DFF 204
           DF+DLI+ T  L ++      +R    +   H+L+DE QDT+  Q+  I  L     +  
Sbjct: 205 DFDDLIMFTVHLFQQFPE---VRETYRRRFRHVLVDEYQDTNHAQYAFIHQLCADRMEEL 261

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                   P  L  VGD  QSIY+F GA  + +L  ++             + I L  ++
Sbjct: 262 DPSAERIEPAELMVVGDADQSIYAFRGANIRNILDFEQDFPN--------ATSILLEQNY 313

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST  ILT  + V    +  +     S                               + 
Sbjct: 314 RSTQTILTAANSVIGHNQARKPKRLWS----------------------------DAGDG 345

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           ++       D   +       AR ++  I  +            +  +  D+ V  R   
Sbjct: 346 ERIVGYVADDEHDE-------ARFVSEEIDRLTDA---------KAYRPGDVAVFYRTNA 389

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            + +   +         +           +   ++D +A  R +++  D +S   +L +P
Sbjct: 390 QSRVFEEIF----IRLGMPYKVVGGVRFYERREVRDALAYLRLLVNPADQVSLRRILNTP 445

Query: 445 LFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQF 497
                +  +  +      +  T +E +++       A   +++ Q  +  I EL  +   
Sbjct: 446 KRGIGDRAVACVNALAERDRTTFWEALRRAEDAPGLATRSLTQIQGFVAMIEELQSMVDG 505

Query: 498 -CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSY--------- 544
              P       L               +    ++ L E +        +           
Sbjct: 506 GERPDVILETTLARSGYLTALEESDDPQDETRLENLAELVAVAREFADDPVAGPSADPAD 565

Query: 545 -------SSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                    L + +    L      I      +   V +MT+HTAKGLE PVVFL     
Sbjct: 566 VDAGTVAPGLADFLERVALVADADQIPDDDPEDAGVVTLMTLHTAKGLEFPVVFLTGLED 625

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            VF H                                                RL YVG+
Sbjct: 626 GVFPHARSLGEQQELEEER----------------------------------RLAYVGV 651

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L + +    S     +       + +   +    ++ +   +      +A   +
Sbjct: 652 TRARERLYVSRAVVRSAWGAPSHNPGSRFLDELPVDLVDWRRTEAAQTRWGRPDLASGSA 711

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                 T   R       +      +   +     +     +   +        LE +  
Sbjct: 712 ARLGSPTAAGRRNFSAAAVRADAAARAKPAREIPSLEPGDRVLHDSFGMGTVVALEGVAE 771

Query: 776 DNQT 779
               
Sbjct: 772 KAVA 775


>gi|241761119|ref|ZP_04759208.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374738|gb|EER64199.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 768

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/630 (16%), Positives = 192/630 (30%), Gaps = 114/630 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y++        DF DL+++   +L +      +         +I++DE QDT+ 
Sbjct: 187 AALYLAYQKRLLSLNACDFGDLLLHMLVILTQH---REVLDSYHDRFRYIMVDEYQDTNQ 243

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +            R +  VGD+ QSIYS+ GAE   +LR +         
Sbjct: 244 AQYLWLRLLAQ----------KNRNICCVGDDDQSIYSWRGAEVANILRFEEDFP----- 288

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II L  ++RST  IL     + +      G +                     L
Sbjct: 289 ---GAKIIRLEHNYRSTPQILGAASGLITHNNARLGKT---------------------L 324

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W     +   +       W    +           AR++   + N+   +   +      
Sbjct: 325 W---TERDQGEKVKIIGVWDGAEE-----------ARQLVADVQNLRRANIPLNK----- 365

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                + +L+R +  +     +         +       F   +   I+D +A  R I  
Sbjct: 366 -----MAILIRAQFQSREFEDIFIA----KNLPYRIIGGFRFYERAEIRDALAYLRVIAQ 416

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFANC------GISKFQH 483
             DDL+F  ++  P     +  + K+      +   + E  +K  +              
Sbjct: 417 PTDDLAFERIVNVPKRGIGKKAMEKLYQAAFLDRIPLAEAAEKLVSEKTLGSKITQSLGQ 476

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           ++    E        S  D    +L     +    +    +    L+         E+  
Sbjct: 477 LMNDFSEWRKSLSVVSHADVTRKMLDESGYKAMLRAVNDVQSAGRLENLTELARAMEEYD 536

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                +L S LE     +   +    +++ +MT+H AKGLE   VFL      VF  +  
Sbjct: 537 -----DLGSFLEHVSLVMDHENDPIDDKITLMTMHAAKGLEFDHVFLPGWEEGVFPSQRS 591

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                + S                                 EE  RL YVG+TRA     
Sbjct: 592 LDEGGLNS--------------------------------LEEERRLAYVGITRAKKCCT 619

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           I   +N     +    T    + +   +    K +    +    +  A + S +   N+ 
Sbjct: 620 IFHAANRRVYGQWIASTPSRFISELPDDHIDEKSLLRKKAPIWRDIWAEDRSKNPAYNSA 679

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINE 753
            E      QL   +    +         + 
Sbjct: 680 KEAITPPWQLASRRGAGWQRAQKAAASPSP 709


>gi|113460864|ref|YP_718931.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 129PT]
 gi|112822907|gb|ABI24996.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 129PT]
          Length = 670

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 108/640 (16%), Positives = 210/640 (32%), Gaps = 121/640 (18%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             IT ++ K+  +L ++   +   +                    T AK     Y    +
Sbjct: 118 KEITADLLKEDKELLQETVSAISRWKNDLILPQQAFTQVRDSKQQTFAK-CYERYNNQIR 176

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF+DLI+    L  +      +R K  ++I ++L+DE QDT+  Q+E+++ L   
Sbjct: 177 AYNALDFDDLIMLPTLLFLQN---QEVRSKWQEKIRYLLVDEYQDTNTSQYELVKLLVGQ 233

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                           VGD+ QSIYS+ GA+P+ + R K    +          +I+L  
Sbjct: 234 ----------HTHFTVVGDDDQSIYSWRGAQPQNMARLKNDFPQ--------LQVIKLEQ 275

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS   IL   + + +  ++       ST     +                        
Sbjct: 276 NYRSNQRILHCANILIANNDHVFEKRLFSTLEQGEKL----------------------- 312

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                        + +  +    A  +            + ++        +D  +L R 
Sbjct: 313 ------------QVLEAKNEEHEAELVV---------GELITHRFMYKTNYRDYAILYRG 351

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + L   +        +I    +          IKD+MA  R +++Q+DD + + ++ 
Sbjct: 352 NHQSRLFEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRVLINQDDDAALLRIIN 407

Query: 443 SPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIA 495
           +P        + K+    + +  ++++ I  F           +  Q    +I EL    
Sbjct: 408 TPKREIGSVTLAKVGKLAQEKHISLFDAIFDFDLIHQLSPKSYNALQGFAYWIVELNDEI 467

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFT----LRNEQNSYSS 546
           Q   P      +L      +       N  I       +     +       +E N   S
Sbjct: 468 QRSEPEQAIKRMLAQLHYEEYLYEHANNPKIAEMQSKNVATLFEWVAVMLKGDEFNEPMS 527

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L +++S L       +       N+V++MT+H +KGLE P VFL+     +  H+     
Sbjct: 528 LSQVVSHLTLRDMLERNETDEESNQVQLMTLHASKGLEFPHVFLIGMEENILPHQTSID- 586

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   EE  RL YVG+TRA   L    
Sbjct: 587 ----------------------------------EDNVEEERRLAYVGITRAQKSLTFSL 612

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                   +  +      + +   +D + ++ +   +  +
Sbjct: 613 CKERKQFGEIFKPEPSRFLSELPQDDLQWERNETHATEQE 652


>gi|169630596|ref|YP_001704245.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977]
 gi|169242563|emb|CAM63591.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus]
          Length = 1078

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 137/1051 (13%), Positives = 275/1051 (26%), Gaps = 204/1051 (19%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT---QC 61
              +  N         LW L +  V D +  +      G  T    A   Q +        
Sbjct: 125  LPMEPNARLLT-ETQLWQLAFRLVCDFDGDLDTEKTPGAVTAQVLALAGQLSEHLVNTTD 183

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            +      L    LT    P++                            R+R     + +
Sbjct: 184  LLSSHDELERLILTLPPGPRQREGGPS------------AWLLRLIETQRERTQLMAIVE 231

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              +A                +   VLDF   +  +  L     +    +    +    +L
Sbjct: 232  QLIAL--------------MRTRGVLDFGAQMALSARLAADHPIVGQTQ---RERYRVVL 274

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   Q  ++ SL                L AVGD  QSIY + GA    + R  
Sbjct: 275  LDEYQDTGHAQRILLSSLFGRGVDPDLA------LTAVGDPIQSIYGWRGASATNLPRFT 328

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                      G      EL  S+R+  + L + + V             S          
Sbjct: 329  TDFP---LPDGSPAPTRELRTSWRNPPEALHLANSVSEEARRR------SVAVRPLLPRP 379

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G +          +                             +A  ++       
Sbjct: 380  DAASGRIACALLGDIAAER--------------------------EWVATQLAA------ 407

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            ++    +   +     VLVR+  D   +            +         L     + D 
Sbjct: 408  VYEQAHREGNRPPSSAVLVRRNSDAAPMAEA----LAAQGVPAEVVGLTGLLGLPEVADT 463

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR--------------------- 460
            +A+ R +       + + +L  P +     D+  +  +                      
Sbjct: 464  VAMLRLVADPTAGPAALRVLTGPRWRLGAHDLVVLWRRATGFGRGGAPAVGPDVGEEADI 523

Query: 461  ---HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                +  +      +++  G  +   + + +  L          D    +        + 
Sbjct: 524  PCLADAISDPGTPDEYSPEGWKRLTALRRELSALRARLG-MPLTDLIAEVQRVLALDVEL 582

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSS---------LQELISELEQYPPTIKRAHSAN 568
            ++    E +D L  F +      +++  S         LQ L +  E          +A+
Sbjct: 583  VAGRRGEGLDQLRAFTDVAAGFAESADQSDPVGVVSAFLQYLDAAWEIEKGLAPVEVAAS 642

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
               V+I+TVH+AKGLE  VV +    + VF         +  +    P +         +
Sbjct: 643  PGRVQILTVHSAKGLEWDVVAVPHLSAGVFPSGVAAPTWLTSATELPPLVRGDRASQGDQ 702

Query: 629  -----------------NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                              + ++     L     +E  RLLYV +TR ++QL +  H    
Sbjct: 703  FGVPQLDTEGITNRKQLADAIARHKDSLATRRIDEERRLLYVAVTRCAEQLFVSGHHWGQ 762

Query: 672  NEKKSNQRT------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
               K    +                      V          ++  + +   + +W A  
Sbjct: 763  TGLKPKGPSDFLVELRDVIESAAAEGVPCGTVERWAPEPPAGERNPMLDQTVEAQWPADP 822

Query: 714  WSTHHPENTPLEREETIK--------------------------QLMDEQKIPKKLFSPI 747
             +    +     R                               +  ++     ++  P 
Sbjct: 823  LAGRRDDIEAGARLVRAALADGAALTMEDDDDTDGWEADVDALLREREQGHRRPEMTLPQ 882

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ-VIFTLPEHKRKNFIT 806
               +     L         +         +    RG   H  +Q    ++     ++   
Sbjct: 883  HLSVTSLVELRQDPQALARRLARPRPTRPDLDARRGTAFHSWVQRHYGSVRLIDFEDLP- 941

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG 866
                        ++ ++L    +  LE+            + V V          I++ G
Sbjct: 942  -----GDGYGSFEDAEDLAALQSAFLESEW-------ADRTPVEVEVPFEISVAGIVVRG 989

Query: 867  RIDQIS---ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LV 921
            RID +     ++    + ++KT H    +          QL++Y +            + 
Sbjct: 990  RIDAVFGPDSAEDTWTVVDWKTGHEPAGDEMKAA---ALQLAVYRRAWASLREIDPARVR 1046

Query: 922  CLLIYVSEPKVF---IIPQNKLNKAFAEIST 949
             +  YV   +      +P     +  AE++ 
Sbjct: 1047 AVFHYVRSGRTVAPTELPDLPHAEELAELTR 1077


>gi|269215715|ref|ZP_06159569.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122]
 gi|269131202|gb|EEZ62277.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122]
          Length = 770

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/757 (13%), Positives = 204/757 (26%), Gaps = 152/757 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+    L    +                 + ++   L   +        
Sbjct: 27  GAGSGKTRVLTYRIAHMLEDLGIQPWQILAITFTNKAAAEMRERLGRLVGPAARGMWVST 86

Query: 66  FSLL---------SSFFLTQKFTPQKNIITQEINKKS------PDLKEKLKKSQDEFIKI 110
           F  +              +Q FT   +  ++ + K           +  +   +      
Sbjct: 87  FHSMCVRILRTDCERLGFSQGFTIYDDDDSKRLVKDIMAELNIDPKRWPVNAIRSRISAA 146

Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++      +F  ++   +  +   +    +E  +     DF+DL++ T  L K       
Sbjct: 147 KNELIVPGVFADEAHDPTAKVCARVYERLQERLRAANSFDFDDLLLYTYLLFKHHPD--- 203

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +         ++L+DE QDT+  Q+E+ + L              R +  VGD+ QSIYS
Sbjct: 204 VLAAYQDRFKYLLVDEYQDTNHAQYEITKQLAA----------KNRNIMVVGDDDQSIYS 253

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  +    +           ++L  ++RST  IL   + V S   N +   
Sbjct: 254 WRGADIRNILEFESDYPQ--------ARSVKLEQNYRSTGTILAAANAVVSHNRNRKAKK 305

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                                + S     D   +        R 
Sbjct: 306 LF----------------------------TEAGEGDKISVYMAPDERDEG-------RW 330

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I  + G            I   +  V  R    +  +  +         +      
Sbjct: 331 IAGEIERLHGQG----------ISYDETAVFYRTNAQSRSLEDML----LRAGVPYRIVG 376

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   I+D+MA    I++  DD++   ++  P        I  I          + 
Sbjct: 377 GTKFFDRAEIRDVMAYLTLIVNPADDIAAKRVINVPRRGIGRTTIEHIDAVAQTLHLTFM 436

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIA-----QFCSPHDFFTLILGAKKGRQQFISRFGN 523
              +      +        +     +                 ++          +   +
Sbjct: 437 QAAQACIADETLRASTRSALASFTGLIAEAGTYAGDLRKVIEAVIDKSGLIAALEAEHTD 496

Query: 524 EVI---DVLDEFLNFTLRNEQNS----------------------YSSLQELISELEQYP 558
           +     + + EFL+      +                          S+ + I  +    
Sbjct: 497 DAQSRVENIREFLSVVDEYIETHEVDESALPPEGVRLLADVRQLSPESMADFIEWVRLRT 556

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                A +  H  V +MT+H++KGLE   VF       +F H +                
Sbjct: 557 DLDAAADADGH-AVTMMTIHSSKGLEFDAVFSAGMEESLFPHTNSSH------------- 602

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                 ++  EE  RL YV +TRA  +L +   +      ++N 
Sbjct: 603 ---------------------DEAGLEEERRLAYVAITRARKKLYLTCAATRKMYGETNA 641

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
                 V +   +      +                 
Sbjct: 642 NPVSRFVGEIPSDLRHNIGLGSEGLSGTGWEKRGSRR 678


>gi|289641103|ref|ZP_06473271.1| ATP-dependent DNA helicase PcrA [Frankia symbiont of Datisca
           glomerata]
 gi|289509044|gb|EFD29975.1| ATP-dependent DNA helicase PcrA [Frankia symbiont of Datisca
           glomerata]
          Length = 822

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 94/664 (14%), Positives = 191/664 (28%), Gaps = 131/664 (19%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            M ++T         +   Y+    ++   DF+DLI+ T +LL+       +     +  
Sbjct: 203 AMSRATGHVERAVAEVYGLYQRRLAESNAFDFDDLIMTTVNLLQ---AFPDVAEHYRRRF 259

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFF------------------VGKNTHSSPRTLFAV 219
            H+LIDE QDT+  Q+ ++R L                               P  L  V
Sbjct: 260 RHVLIDEYQDTNHAQYVLVRELVGQASRLTVDGEPVRPDPVPLGADADEPAVEPAELCVV 319

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  QSIY+F GA  + ++  ++             ++I L  ++RST  IL+  + V +
Sbjct: 320 GDADQSIYAFRGANIRNIVEFEQDYP--------DATVILLEQNYRSTQTILSAANAVIA 371

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                +     S                               + ++       +   + 
Sbjct: 372 RNARRKPKRLWS----------------------------DAGDGEKIVGCVADNEHGE- 402

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A  +A  +  +   +         + +  ++ +  R    + +   +       
Sbjct: 403 ------AAFVAAEVDRLSDAE---------LARPGEVAIFYRTNAQSRVFEEIF----IR 443

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +           +   ++DL+A  R +++  D ++   +L  P     +     +   
Sbjct: 444 VGLPYRVIGGVRFYERREVRDLLAYLRVLVNPADTVNLRRILNVPKRGIGDRAEAMLAAF 503

Query: 460 RHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                  +       + +        +  +     + EL               +L    
Sbjct: 504 AERERVPFADALNRVDEVPGLTARSANAVRGFATLLAELRAAVADGPVAAL-ETVLERTG 562

Query: 513 GRQQFISRFGNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS-- 566
              +  +    E     + L E ++      EQ    SL + + ++       +      
Sbjct: 563 YLAELAAADTLEAEGRVENLQELVSVAREFSEQFPQGSLADFLEQVSLVADADQVPDPED 622

Query: 567 ------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                      V +MT+H+AKGLE PVVFL      VF H                    
Sbjct: 623 GADGEGGAAGAVTLMTLHSAKGLEFPVVFLTGLEDGVFPHLRTLG--------------- 667

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                +  EE  RL YVG+TRA  +L + +    S   +     
Sbjct: 668 -------------------DSTELEEERRLAYVGITRARARLYLTRAEVRSAWGQPTYNP 708

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
               + +        +    +         +   S     ++        ++     +  
Sbjct: 709 PSRFLEEVPAELVDWQGNTQSAPAAAHPRTSAWGSAPAGPSSARAGGLPGRRPAPAPREI 768

Query: 741 KKLF 744
             L 
Sbjct: 769 PDLS 772


>gi|255262981|ref|ZP_05342323.1| DNA helicase II [Thalassiobium sp. R2A62]
 gi|255105316|gb|EET47990.1| DNA helicase II [Thalassiobium sp. R2A62]
          Length = 797

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 103/634 (16%), Positives = 188/634 (29%), Gaps = 117/634 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y+   K+    DF DL+++   + +  +    +  +  +   +IL+DE QDT++
Sbjct: 196 AKIYVDYQARLKQLNAADFGDLLLHVVTIFQTHED---VLKQYQRWFKYILVDEYQDTNV 252

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L  D           + +  VGD+ QSIY + GAE   +LR ++        
Sbjct: 253 AQYLWLRLLAAD----------HKNICCVGDDDQSIYGWRGAEVGNILRFEQDFP----- 297

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +++ L  ++RST  IL     V    +   G +                     L
Sbjct: 298 ---GATVVRLEQNYRSTEHILGAAAGVIDANKGRLGKT---------------------L 333

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W        +    ++     ++D   +       AR I   +  M              
Sbjct: 334 W-------TAAEGGEKVRLIGHWDGEEE-------ARWIGNEVEAMQRGTRGLD-----P 374

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D+ +LVR                    +           + L I+D MA  R  +S
Sbjct: 375 KSLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRLAVS 430

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQH 483
            +DDL+F  ++ +P     +    KI            E   +    +     G  +   
Sbjct: 431 PDDDLAFERIVNTPKRGLGDKAQQKIQIAARANGVNLIEGARILLAAKGLGGKGGVELAK 490

Query: 484 VIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
           +I+ +     + +    +  +   ++L        + +    E    ++ L E +    +
Sbjct: 491 LIEGLDRWHALIREDGQNHIEVAEIMLDESGYTGFWQNDKTPEAPGRLENLKELVKALEQ 550

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E         L   LE     +         +V IMT+H AKGLE P VFL      +F
Sbjct: 551 FEN--------LQGFLEHVSLIMDNESEQEGAKVSIMTLHAAKGLEFPAVFLPGWEDGLF 602

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                  +        EE  RL YVG+TRA
Sbjct: 603 PSQRS--------------------------------MDESGMKGLEEERRLAYVGITRA 630

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +   I   +N     +         + +   +   V                   ++  
Sbjct: 631 EEICTISFAANRRVYGQWQSSLPSRFIDELPEDHVDVLTPPGLYGGGFGAAGMSTQASPM 690

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +              D    P            
Sbjct: 691 MQEMSGSNLHQEAAQADVYNSPGWRRLQANAQKR 724


>gi|259416911|ref|ZP_05740831.1| DNA helicase II [Silicibacter sp. TrichCH4B]
 gi|259348350|gb|EEW60127.1| DNA helicase II [Silicibacter sp. TrichCH4B]
          Length = 811

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 111/668 (16%), Positives = 197/668 (29%), Gaps = 146/668 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                Y+   K+   +DF DL+++  ++ +       +  +  +   +IL+DE QDT++ 
Sbjct: 195 EFYDQYQTRLKELNAVDFGDLLLHCVEIFQNNPD---LLAQYHRWFRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L           S  + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLA----------SGHKNICCVGDDDQSIYGWRGAEVGNILRFEKDF------- 294

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL+    V    E   G                      +LW
Sbjct: 295 -SGAKVIRLEQNYRSTKHILSAASGVIRGNEGRLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++     ++D   +       AR I   I  M               
Sbjct: 333 -------TEADGGEKVRLIGHWDGEEE-------ARWIGEEIEAMQRG-----TRGMCQY 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              ++ +LVR                    +           + L I+D MA  R ++S 
Sbjct: 374 GLNEMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRVVISP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------FQHV 484
           EDDL+F  ++ +P     +     I    R    ++ E  +     G+ K       + +
Sbjct: 430 EDDLAFERIVNTPKRGLGDKAQQTIQMVARENGVSLVEGARLAVEEGLIKGKGGAALRRL 489

Query: 485 IKYIHELIHIAQ--------------------------FCSPHDFFTLILGAKKGRQQFI 518
           ++ I     + +                            S  +   +IL        + 
Sbjct: 490 VENIARWGQMTRAVIPNDDDEDAVLEGVQSFEEFQARTEVSHVELAEIILDESGYTAMWQ 549

Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           +    +    ++ L E +      +         L   LE     +         +V IM
Sbjct: 550 ADKNPDSPGRLENLKELVKALENFDN--------LQGFLEHVSLVMDNDKQDAEQKVSIM 601

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE P VFL      +F  +                                  
Sbjct: 602 TLHAAKGLEFPAVFLPGWEDGLFPSQRS-------------------------------- 629

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +        EE  RL YVG+TRA +   I    N     +     W   +   F ++   
Sbjct: 630 MDESGLKGLEEERRLAYVGITRAEEVCTISFAGN-----RRVFGQWQSQLPSRFIDELPE 684

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
           + +++              +    E +     E      D    P       +       
Sbjct: 685 EHVEVLTPPGLYGGGYGAAAPSAAEPSVRSTIEERMSNADGYNSPGWKRMQARTAERGYS 744

Query: 756 ILNPSTID 763
               S   
Sbjct: 745 KPRKSDAQ 752


>gi|322834927|ref|YP_004214954.1| DNA helicase II [Rahnella sp. Y9602]
 gi|321170128|gb|ADW75827.1| DNA helicase II [Rahnella sp. Y9602]
          Length = 720

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 103/671 (15%), Positives = 206/671 (30%), Gaps = 110/671 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L   + S  +             +  +   L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLAVEKCSPYSIMAVTFTNKAAAEMRHRIDQLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + + +   + +     D  ++++  +     +             
Sbjct: 90  FHGLAHRLL------RAHHLDANLPQDFQILDSDDQIRLIKRLIKALNIDDKQWPPRQAM 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +             +   Y+EA  +  ++DF +L++  ++L   +
Sbjct: 144 WYINGKKDEGLRPQHVETYNNPVEATWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNK 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                I     +   ++++DE QDT+ IQ+  IR L  D             +  VGD+ 
Sbjct: 204 PH---ILQHYRERFTNLMVDEFQDTNSIQYAWIRLLAGD----------NNNVMIVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + + R  +               I L  ++RST+ IL   + +      
Sbjct: 251 QSIYGWRGAQVENIQRFLKDFPN--------AQTIRLEQNYRSTSTILKAANSLIENNNG 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G +                     LW             +  S    F+ L +     
Sbjct: 303 RMGKN---------------------LW-------TEDGEGEPISLYCAFNELDES---- 330

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              R +   I                    KD  +L R    + ++      +       
Sbjct: 331 ---RFVVNRIKTWQDNGGAL----------KDCAILYRSNAQSRVLEEALLQMAM----P 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     D   IKD +A  R + ++ DD +F  ++ +P     +  +  +    R  
Sbjct: 374 YRIYGGQRFFDRQEIKDALAYLRLMSNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDR 433

Query: 463 TETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG--- 513
             T+++  +             S  Q   + +  L H       H     ++        
Sbjct: 434 QMTMWQATRALLQEKVLAGRAASSLQRFTELVDALAHETSDMPLHVQTDRVIKDSGLFIM 493

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
            +Q     G   I+ L+E +  T +   Q+    L  L + L        +    AN + 
Sbjct: 494 YEQEKGEKGQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAALEAGEGQADANQDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            ++MT+H+AKGLE P VF+V     +F  +   +                    +     
Sbjct: 554 TQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLEEGGRLEEERRLAYVGVTRAMQKLTLT 613

Query: 632 VSDLIKHLKKS 642
            ++  +   K 
Sbjct: 614 YAETRRLYGKE 624


>gi|260752918|ref|YP_003225811.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552281|gb|ACV75227.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 768

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/630 (16%), Positives = 192/630 (30%), Gaps = 114/630 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y++        DF DL+++   +L +      +         +I++DE QDT+ 
Sbjct: 187 AALYLAYQKRLLSLNACDFGDLLLHMLVILTQH---REVLDSYHDRFRYIMVDEYQDTNQ 243

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +            R +  VGD+ QSIYS+ GAE   +LR +         
Sbjct: 244 AQYLWLRLLAQ----------KNRNICCVGDDDQSIYSWRGAEVANILRFEEDFP----- 288

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II L  ++RST  IL     + +      G +                     L
Sbjct: 289 ---GAKIIRLEHNYRSTPQILGAASGLITHNNARLGKT---------------------L 324

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W     +   +       W    +           AR++   + N+   +   +      
Sbjct: 325 W---TERDQGEKVKIIGVWDGAEE-----------ARQLVADVQNLRRANIPLNK----- 365

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                + +L+R +  +     +         +       F   +   I+D +A  R I  
Sbjct: 366 -----MAILIRAQFQSREFEDIFIA----KNLPYRIIGGFRFYERAEIRDALAYLRVIAQ 416

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFANC------GISKFQH 483
             DDL+F  ++  P     +  + K+      +   + E  +K  +              
Sbjct: 417 PTDDLAFERIVNVPKRGIGKKAMEKLYQAAFLDRIPLAEAAEKLVSEKTLGSKITQSLGQ 476

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           ++    E        S  D    +L     +    +    +    L+         E+  
Sbjct: 477 LMNDFSEWRKSLSVVSHADVTRKMLDESGYKAMLRAVNDVQSAGRLENLTELARAMEEYD 536

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                +L S LE     +   +    +++ +MT+H AKGLE   VFL      VF  +  
Sbjct: 537 -----DLGSFLEHVSLVMDHENDPIDDKITLMTMHAAKGLEFDHVFLPGWEEGVFPSQRS 591

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                + S                                 EE  RL YVG+TRA     
Sbjct: 592 LDEGGLNS--------------------------------LEEERRLAYVGITRAKKCCT 619

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           I   +N     +    T    + +   +    K +    +    +  A + S +   N+ 
Sbjct: 620 IFHAANRRVYGQWIASTPSRFISELPDDHIEEKSLLRKKAPIWRDIWAEDRSKNPAYNSA 679

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINE 753
            E      QL   +    +         + 
Sbjct: 680 KEAITPPWQLASRRGAGWQRAQKAAASPSP 709


>gi|315608146|ref|ZP_07883138.1| ATP-dependent DNA helicase PcrA [Prevotella buccae ATCC 33574]
 gi|315250115|gb|EFU30112.1| ATP-dependent DNA helicase PcrA [Prevotella buccae ATCC 33574]
          Length = 819

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 104/693 (15%), Positives = 204/693 (29%), Gaps = 125/693 (18%)

Query: 100 LKKSQDEFIKIRD--RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           + ++++  I        +             +   +   Y +  ++   +DF+DL++ T 
Sbjct: 149 ISRAKNRLITAEKYANDSALMARDRQQNMPAI-SRIYTLYADRCRQANAMDFDDLLVLTY 207

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            L  +      IR K      ++L+DE QDT+ +Q  ++  LT D           + + 
Sbjct: 208 QLFAEHPD---IREKYAHHFEYVLVDEYQDTNYVQQCIVLQLTRD----------HQRVC 254

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIY F GA    +L+   +             + +L  ++RST +I+   + +
Sbjct: 255 VVGDDYQSIYGFRGANIDNILQFNELY--------NDPKLFKLEQNYRSTRNIVKAANSL 306

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
               E            I          G   +++   S  +                  
Sbjct: 307 MKHNE----------RQIPKDVYSENDEGEKLIYKPAYSDKE------------------ 338

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                   A  +   I  +   +             +D  +L R    +  +    +   
Sbjct: 339 -------EAVIVCNEIKRIKRKEGG---------DYRDFAILYRTNSQSRSLEEEMK--- 379

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               I               IKD++A  R +++ +D+ +F  ++  P        I KI 
Sbjct: 380 -KQHIPYRIYGGLSFYQRKEIKDIIAYFRLVINPDDEEAFKRIINYPARGIGNTTIQKIA 438

Query: 458 T-QRHETETVYEYIQKFANC-------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                +  + +  I    +         ++K       I   +  +     +    +I+ 
Sbjct: 439 ATAVEQGVSFWTVIMSPGHYGLSVNKGTLAKIDAFRSLISSFMLKSLELDAYQLGQMIIK 498

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQE---LISELEQYPPTIK 562
                +   S    E       L+EFL       E       +    L   L++      
Sbjct: 499 ESGISKDIFSGVDPESLSRQQNLEEFLAGMQDFVESQREEGNENQVFLADFLQEVSLLTD 558

Query: 563 RAHSANHN--EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  +   V +MT+H AKGLE P VF+V     +F                      
Sbjct: 559 LDSDEGDDTNRVVMMTIHAAKGLEFPTVFIVGLEENIFPSPLSANSPRELEEERRLL--- 615

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                          YV +TRA    I+    N          T
Sbjct: 616 -------------------------------YVAITRAERHCILTNAQNRWRFGSMQFDT 644

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIA--YEWSTHHPENTPLEREETIKQLMDEQK 738
               +YD   +    +++  + S  K        +      ++ P  R +T + + D   
Sbjct: 645 PSRFIYDIDPSLIEEERMGASYSGGKSFRTGRNGDSYGDAFQDLPFSRNDTPEWMEDRLG 704

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
            P+   S  +     P  +   +   +  +   
Sbjct: 705 YPRPASSSYQGHTPTPRAVYQPSQKVERGSGAP 737


>gi|148826716|ref|YP_001291469.1| ATP-dependent DNA helicase [Haemophilus influenzae PittEE]
 gi|148716876|gb|ABQ99086.1| ATP-dependent DNA helicase [Haemophilus influenzae PittEE]
          Length = 671

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 116/644 (18%), Positives = 223/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRAKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 D----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGEGEKLLIIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  ++++ I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q          +L      +       +          +    ++        E N   
Sbjct: 467 IQRSESERAVRSMLSVIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +LI  
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELIFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|149376496|ref|ZP_01894257.1| DNA-dependent helicase II [Marinobacter algicola DG893]
 gi|149359163|gb|EDM47626.1| DNA-dependent helicase II [Marinobacter algicola DG893]
          Length = 721

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 102/550 (18%), Positives = 185/550 (33%), Gaps = 117/550 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE+    + ++DF +L++ +++L         +          IL+DE QDT+ IQ
Sbjct: 174 VYRQYEKLCNLSGLVDFGELLLRSHELWLH---RPELLSHYQSRFQQILVDEFQDTNTIQ 230

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  ++ L  +             L  VGD+ QSIY + GA+ + + + +R          
Sbjct: 231 YAWLQILAGN----------RVPLTVVGDDDQSIYGWRGAKIENIQQYQRDFPN------ 274

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RST  IL   + V +  +   G                      +LW 
Sbjct: 275 --ARMLRLEQNYRSTQMILKAANAVIANNQGRLGK---------------------ELW- 310

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     + +  S  + F+   +       A  IA TIS+ +    +          
Sbjct: 311 ------TDGKDGEPISLYAAFNEQDE-------ANYIADTISSWVSEGNL---------- 347

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +  +L R    + ++            I           D   I++ +A  R +  + 
Sbjct: 348 RSESAILYRSNAQSRVLEESL----IRQGIPYRVYGGLRFYDRQEIRNAIAYLRLVHYRR 403

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHVI 485
           DD +F  ++  P        +  +       + +++E  ++    G  K       Q  +
Sbjct: 404 DDAAFERVVNIPARGIGAKSLADMRAFATERSISLWESAERLLEAGQVKGRAKTGLQSFM 463

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN 542
             I  L  +    S H      L     R    +  G +     + LDE +N     E  
Sbjct: 464 GIIERLTEMVDDASLHGLMKSTLELSGLRDYHANEKGEKGQARAENLDELVNALSDFEAE 523

Query: 543 SYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                L E I++              N + V++MT+H+AKGLE P+VFL      +F H 
Sbjct: 524 EGVDPLSEFIAQAALDAGEA--QAEVNEDCVQLMTLHSAKGLEFPLVFLAGVEEGLFPHS 581

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              +                                       EE  RL YVG+TRA  +
Sbjct: 582 MSLEEPG----------------------------------RMEEERRLAYVGITRAMQK 607

Query: 662 LIICKHSNTS 671
           L++    +  
Sbjct: 608 LVLTYAESRR 617


>gi|296115176|ref|ZP_06833817.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
 gi|295978277|gb|EFG85014.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
          Length = 747

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 100/624 (16%), Positives = 177/624 (28%), Gaps = 115/624 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + + A Y++   +    DF DL+++  ++++       +  +  +   +IL+DE QDT+ 
Sbjct: 185 REIYADYQKRLIQLNACDFGDLMLHMTEIMRTHPD---VLAQYHRFFRYILVDEYQDTNT 241

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L +              +  VGD+ QSIYS+ GAE + +LR +         
Sbjct: 242 IQYLWLRLLAQ-------RGEGQANICCVGDDDQSIYSWRGAEVENILRFEHDFP----- 289

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 ++ L  ++RST  IL     + +  E   G +                      
Sbjct: 290 ---GAHVVRLERNYRSTRQILGAASGLIAHNEERLGKTLHPGR----------------- 329

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                         ++    S +DS  +       AR +   +  +              
Sbjct: 330 ---------EDAEGEKVRVISVWDSDDE-------ARMVGEELERLHNDGHPL------- 366

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +  +LVR    T               +           +   I+D +A  R +  
Sbjct: 367 ---SECAILVRAGFQTRAFEERL----ITIGLPYRVVGGLRFYERAEIRDALAYMRVLSQ 419

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQH 483
             DDL+F  ++  P        + K+    R     +   + +                 
Sbjct: 420 PSDDLAFERIINVPRRGIGNTGVQKLHLHARARDIPLTAAVLEMLATGGIKGRAREHLAA 479

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
           ++K   +                +L        + +    E    +D L E +      E
Sbjct: 480 LMKCFGQCREDLAREGHVVVVERLLEESGYLDMWKADKSPEAPGRLDNLKELVRALADFE 539

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                        LE     ++   +A +  + IMT+H AKGLE   VFL      VF  
Sbjct: 540 TLGG--------FLEHVALVMETEENAGNERLSIMTLHGAKGLEFDTVFLPGWEEGVFPS 591

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                  +        EE  RL YVG+TRA  
Sbjct: 592 QRT--------------------------------MDEGGAKGLEEERRLAYVGITRARL 619

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           + II   +N               V +                 N         +T  P 
Sbjct: 620 RAIISHAANRRIYGNWQSAIPSRFVEELPPEHVDTIGDATRARHNGAMRSPVFGATPFPV 679

Query: 721 NTPLEREETIKQLMDEQKIPKKLF 744
                         D         
Sbjct: 680 VARRRAVTDATSSGDTPSHKSAFR 703


>gi|260912802|ref|ZP_05919288.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
 gi|260633180|gb|EEX51345.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325]
          Length = 671

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 115/641 (17%), Positives = 219/641 (34%), Gaps = 121/641 (18%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             +T ++  +  DL  +L  +   +          K         T A      Y +  +
Sbjct: 118 KELTADLLSEDKDLLRELISTISNWKNDLISPQKAKAQARDAKEHTFAH-CYERYSQQIR 176

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              VLDF+DLI+    L K+ +    +R K  Q+I ++L+DE QDT+  Q+E+I+ L  D
Sbjct: 177 AYNVLDFDDLIMLPTLLFKQNEE---VRSKWQQKIRYLLVDEYQDTNTSQYELIKLLVGD 233

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                           VGD+ QSIYS+ GA P+ ++R K    +          +I+L  
Sbjct: 234 ----------RACFTVVGDDDQSIYSWRGARPQNMIRLKTDFPQ--------LKVIKLEQ 275

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RST  IL   + +    E+       S              G  +  + + ++++   
Sbjct: 276 NYRSTHRILHCANILIDNNEHVFDKKLFSNL------------GEGEKLQVLEAKNEDD- 322

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                                  A R+            + ++   R  + KD  +L R 
Sbjct: 323 ----------------------EAERVV---------GELIAHRFMRKTKYKDYAILYRG 351

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++ 
Sbjct: 352 NHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLLVNQDDDAAFLRIVN 407

Query: 443 SPLFNFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           +P        + K+     E           +E IQ+      +  Q+  ++I  L    
Sbjct: 408 TPRREIGTITLQKLGELAQEKHTSLFDAIFDFELIQRITPKAYNALQNFAQWIVNLSDEV 467

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYSS 546
               P      +L      +       +          +    ++        + +   S
Sbjct: 468 ARSEPAQAIRTMLAQLHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLNGNDVDEPMS 527

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++ L       +       ++V++MT+H +KGLE P VFL+     +  H+     
Sbjct: 528 LNQVVTRLTLRDMLERGEDDDESDQVQLMTLHASKGLEFPHVFLIGMEEGILPHQTSID- 586

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   EE  RL YVG+TRA   L    
Sbjct: 587 ----------------------------------EDNVEEERRLAYVGITRAQQTLCFSL 612

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
                   +  +      + +   +D +  + K   S  ++
Sbjct: 613 CKERRQFGEILKTEPSRFLAELPADDIQWARNKPPMSKEQE 653


>gi|224543224|ref|ZP_03683763.1| hypothetical protein CATMIT_02424 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523857|gb|EEF92962.1| hypothetical protein CATMIT_02424 [Catenibacterium mitsuokai DSM
           15897]
          Length = 710

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/546 (16%), Positives = 171/546 (31%), Gaps = 114/546 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + A YE+ K+ + ++DF+DL++NT  + +       I  +  +    + +DE QD   
Sbjct: 169 AEIYAMYEKYKEDHNMMDFDDLLLNTLKIFQDNPD---IVSRWSRRYQFVHVDEFQDVGS 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           I++ +I    +D             +  VGD  Q+IYSF G++   ++   +  Q     
Sbjct: 226 IEYNLIHYFAQDSI-----------VCVVGDPDQTIYSFRGSDVNYIMNFDKDYQN---- 270

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L  ++RST  IL + + +    +N       S                   
Sbjct: 271 ----VKTVILDQNYRSTKTILDISNNLIKKNKNRLEKDLFSEL----------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                          +    +  +   +        + I  TI  +  +           
Sbjct: 310 -----------EEGDKVIHYAAVNEDAES-------KYICDTIQKITQSG---------- 341

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +    I VL R    +  I           +I           +   +KD ++  R ++ 
Sbjct: 342 VSESHIAVLYRANYLSRSIEQEM----IRRQIPYKIFGGLKFFNRKEVKDALSYIRLVV- 396

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------ISKFQH 483
             DDLSF  ++ +P        + KI  T      + YE +  F +            + 
Sbjct: 397 MGDDLSFERVVNTPSRGIGAKTLEKITLTASRHGISNYEAVCFFLDETGVGGKAKKGLKE 456

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +++ I +        S  D +  +L      +       +  I+ L E  N         
Sbjct: 457 LVEVIEKAR--VSDKSLADIYEDLLKDTGYLKLMKDGQEDNRIENLMELKNSIDTYVNTH 514

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +  +  S L+       +      + V +M++H AKGLE   VF+      +F  +  
Sbjct: 515 PET-PDFESYLQDIALYTSQDEEKTGDYVSLMSIHMAKGLEFDYVFVSGLSEGIFPSERT 573

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                   L ++                                 RL YV  TRA  +L 
Sbjct: 574 MSEGGDEGLEEE--------------------------------RRLAYVAFTRAKKRLY 601

Query: 664 ICKHSN 669
           +     
Sbjct: 602 LTDSQG 607


>gi|296138860|ref|YP_003646103.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
 gi|296026994|gb|ADG77764.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
          Length = 1111

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 135/1053 (12%), Positives = 273/1053 (25%), Gaps = 193/1053 (18%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
              +     L       +    ++ + +           +    +    ++  + L+   L
Sbjct: 129  TYHAYAGRLHGDYGMLLPVEPTVRLVSETERWQIAFDVVTGWDEALETDKNPATLTEQVL 188

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKS-----QDEFIKIRDRFNTYKMFKSTLASLTL 129
                    +++T +  + S D  E+L        +              + +   A + L
Sbjct: 189  GLSGALADHLVTPDQLEASDDELERLIGLLPPGPRQRAAPNAALLKAADVQEQRRALIPL 248

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDT 188
             + + A      +   VLDF   +     L L   DV+A            +L+DE QDT
Sbjct: 249  VRAVAAE----MRVREVLDFGSQMGLAAQLALANPDVAAL----ERSRFGAVLLDEYQDT 300

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
               Q  ++ SL                + AVGD  QSIY + GA    + R      +  
Sbjct: 301  GHAQRMLLASLF-------GGPGGAAAVTAVGDPIQSIYGWRGASAANLPRFATDFPQ-- 351

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               G      EL  S+R+    L++ + V               + +R R         +
Sbjct: 352  -ADGMPAPRRELLTSWRNPTGALSLANAVSEDLRRRG----VPVSELRARPDAPSGDLRI 406

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
             L   V+ +     +     W    D+                                 
Sbjct: 407  ALHSTVIDERTWVADAITALWRGRLDAGD------------------------------- 435

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                   + VLVR+  D+            +  + V       L     ++DL+AL R  
Sbjct: 436  ---PPPTVAVLVRRNADSAG----LAAALGERGVPVEVVGLGGLLHTPEVQDLVALLRLA 488

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------------------------- 462
            +      + + +L  P +     D+  +  +                             
Sbjct: 489  VEPLAGTAAMRLLTGPRWQLGAADLRALWNRARRIAHGTGRAATGLVTTADELDQALDAT 548

Query: 463  -------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH--DFFTLI 507
                                   ++  G++K + + + I  +        P        +
Sbjct: 549  LPAELLDAAGLGDAIADPGPDSDYSAAGLAKIRSLDREIRNVRERLGHPLPEVVAEAERV 608

Query: 508  LGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI--- 561
            LG     +   +R         + LD F +  +   +   ++L  L+S L          
Sbjct: 609  LGVSIETRIRAARQLGGRATGREHLDAFADVVVSYAERPTATLPGLLSFLAAAEAVEGGL 668

Query: 562  -KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI-- 618
                     + V+++TVH+AKGLE  VV +      +F         +       P +  
Sbjct: 669  TPGDVEVATDRVQVLTVHSAKGLEWDVVAVPHLSEGIFPSNRAMPTWLSTPAELPPELRG 728

Query: 619  ---------------PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                  K   + +      LK     E  RL YV +TR    L+
Sbjct: 729  DVAEPGESDGVPRLDLSECNNRKDLEDALDTHRAALKAMNMHEDERLFYVAVTRTQGTLL 788

Query: 664  ICKHSNTSNEKKSNQRTWY---------DMVYDSFHNDERVKKIKLTNSINKDEWIA--- 711
            +  H  + + K +   + +         + V           +  L     +  W     
Sbjct: 789  LSGHYWSEDVKTAKAPSRFLDRAREHAPEAVGHWAATPVDDAENPLEAEPVQAPWPRDFL 848

Query: 712  ---------------------------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                                              P     +    + +   +  +  ++ 
Sbjct: 849  AAHRADADAGAALVLAALADPDGTEADARAPGEDPHGWAADVTALLAERARQAAMDLEVA 908

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
             P +  +++   L  S      +         N    RG   H  L+         R+  
Sbjct: 909  VPREVSVSQLVELRRSPETFARRLRRPVPYRPNPYARRGTAFHAWLE---------RRYG 959

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKD 861
             +     +     A                 ++          + + V +          
Sbjct: 960  ASRLLDFDELPGAADGDAGADE------NLALLQRRFEESEWAARTPVDIEVPFEIAAAG 1013

Query: 862  IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNK 918
             ++ GR+D +         + ++KT     +  +        QL+ Y          P  
Sbjct: 1014 TVVRGRMDAVFRDPGGGFTVVDWKTGVRPSEPADERAAA--VQLAAYRLAWARLRDVPVD 1071

Query: 919  SLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
             +     YV   +         +     + T  
Sbjct: 1072 EVRAAFFYVRSGETVSPSDLLDHAGLELLITSA 1104


>gi|83592871|ref|YP_426623.1| ATP-dependent DNA helicase Rep [Rhodospirillum rubrum ATCC 11170]
 gi|83575785|gb|ABC22336.1| ATP-dependent DNA helicase, Rep family [Rhodospirillum rubrum ATCC
           11170]
          Length = 768

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 109/772 (14%), Positives = 215/772 (27%), Gaps = 140/772 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +    L    V                 + ++A  +      Q     
Sbjct: 48  GAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRAAREMRERAGAMIGPMAEQVWLGT 107

Query: 66  FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  L    L +       +      + + +   LK+ L+                   + 
Sbjct: 108 FHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQILEAEGIDTKKWTPQAGMGLIQRW 167

Query: 111 RDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
           +D+    +   +       A      L   Y++        DF DL+++   +  K    
Sbjct: 168 KDKGLLPEAVPAGDGGREYAGGRAVDLYKQYQQRLAVVNAADFGDLLLHCLTIFTKHPD- 226

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     +  ++IL+DE QDT++ Q+  +R L                +  VGD+ QSI
Sbjct: 227 --VLADYSKMFHYILVDEYQDTNVAQYLWLRLLAR----------GHGNICCVGDDDQSI 274

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YS+ GAE   +LR +              +++ L  ++RST  IL     +    +   G
Sbjct: 275 YSWRGAEVGNILRFEADFP--------GATVVRLERNYRSTPTILAAASGLIRHNKGRLG 326

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               +                           +             +D   +       A
Sbjct: 327 KDLRAG--------------------------EGDEAGDAVIVRGLWDGEEE-------A 353

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           RR+   I                  +   + VLVR    T               +    
Sbjct: 354 RRVVDDIETRQRAGD----------RLNGMAVLVRAGFQTRAFEERL----ILAGVPYRV 399

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETET 465
                  +   I+D +A  R +   +D L+F  ++  P     +  +  +    R  + +
Sbjct: 400 VGGARFYERQEIRDAIAYLRLVAQPDDSLAFERIINLPRRGLGDASLQTLMRASRMASIS 459

Query: 466 VYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           +    +      +         +  +  +     +A   +P +    +L      + +  
Sbjct: 460 LMRAAREAIETDELRPQARKALRAFLDDMGRWRSLADAMAPDELCGTVLDESGYLEMWRK 519

Query: 520 RFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
               +     + L E ++     E         L + LE     +     A  + V +MT
Sbjct: 520 DKSPDAQGRVENLKELVSALKEFES--------LGAFLEHVSLVMDNEARATEDAVTLMT 571

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE   VFL     ++F H+                                  +
Sbjct: 572 LHAAKGLEFDTVFLPGWEEEIFPHRR--------------------------------AL 599

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDE 693
                   EE  RL YVG+TRA  + II   +N    +  +      + D +       +
Sbjct: 600 DENGAEALEEERRLAYVGLTRARKRAIISFVANRRVYNEWRACLPSRFIDELPPEVVERD 659

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
               +  + +    +          P +            +           
Sbjct: 660 SASGVYGSGAQGYADAPGGWGRLGGPGSWGGGWGNAAPARVPAAGDTPWQTR 711


>gi|39936568|ref|NP_948844.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009]
 gi|39650424|emb|CAE28947.1| DNA helicase II [Rhodopseudomonas palustris CGA009]
          Length = 848

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/586 (17%), Positives = 178/586 (30%), Gaps = 147/586 (25%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+E  K     DF DL++    L ++      +          IL+DE QDT++ Q
Sbjct: 204 LYAQYQERLKILNAADFGDLLLENIRLFREHPD---VLRSYQNRFKFILVDEYQDTNVAQ 260

Query: 193 WEVIRSLTEDFFVG-------------------------------------KNTHSSPRT 215
           +  +R L++                                           +T + P+ 
Sbjct: 261 YLWLRLLSQTPSSSSLPGSTRQSISSQEDGSPGLAASRRPGDDVETSGNVVASTSAPPKN 320

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +  VGD+ QSIY + GAE   +LR                 +I L  ++RST  IL    
Sbjct: 321 ICCVGDDDQSIYGWRGAEVDNILRFDHDFP--------GAKVIRLERNYRSTGHILAAAS 372

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            + +  E   G +                                  + +  + T  +DS
Sbjct: 373 HLIAHNEGRLGKTL----------------------------RTEDVDGEMVTVTGAWDS 404

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +       AR I   I  +                  +I +LVR              
Sbjct: 405 EEE-------ARAIGEEIEQLQRQGHAL----------NEIAILVRASFQMREFEDRFVT 447

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
           L     +           +   I+D +A  R I S  DDL+F  ++  P     +  +  
Sbjct: 448 L----GLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNVPKRGLGDATVQM 503

Query: 456 IC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +    R     +++  +      +         + +I+            +  +   ++L
Sbjct: 504 LHDHARKRRIPLFDAARMVIDTDELKPKARGSLRGLIESFERWQVQRDAVAHTELAEIVL 563

Query: 509 GAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
                 + +      +     + L E +      E         L   LE     + R  
Sbjct: 564 DESGYTEMWQKDRSADAAGRLENLKELVRSMEEFEN--------LQGFLEHISLVMDREG 615

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            A+ + V +MT+H+AKGLE   VFL      +F H+                        
Sbjct: 616 GADEDAVSVMTLHSAKGLEFETVFLPGWEEGLFPHQR----------------------- 652

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                     +    ++  EE  RL +VG+TRA  +  +   +N  
Sbjct: 653 ---------ALDEQGRAGLEEERRLAHVGITRARKRAKLYFATNRR 689


>gi|188995178|ref|YP_001929430.1| ATP-dependent DNA helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188594858|dbj|BAG33833.1| ATP-dependent DNA helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 765

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/663 (15%), Positives = 204/663 (30%), Gaps = 135/663 (20%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTL--------AKYLNAHYEEAKKKNCVLDFE 150
           +L   Q      +++  + + + +                  + + Y    K+N  +DF+
Sbjct: 136 RLNAVQHRISMAKNQLISPESYAANKDLSRYDIDCRMPRMAEIYSLYTILCKQNNAMDFD 195

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL+   N L +       +       I+++LIDE QDT+  Q+ + R L  +        
Sbjct: 196 DLLFKINVLFRDFPD---VLQTYRDRIDYLLIDEYQDTNFAQYLIARQLMGE-------- 244

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +F VGD+ QSIYSF GA+ + +L   +              + +L  ++RST  I
Sbjct: 245 --KGKVFVVGDDAQSIYSFRGAKVENILGFSKSFP--------GSKLFKLEENYRSTQSI 294

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   + + +  E        S   +  R                                
Sbjct: 295 VNAANSLIAYNEGRIPKQVFSNKQVGER-------------------------------- 322

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                L    S  + A  +A +I      +              D  +L R    + +  
Sbjct: 323 ---IRLTGCLSGYLEAYTVADSIVERRMQEY---------CPYSDFAILYRTNAQSRVFE 370

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R     + I               IKD++A  R I++  DD +   ++  P     +
Sbjct: 371 EALR----KHNIPFRIYGGLSFYSRKEIKDVLAYFRLIVNPNDDEALRRVINYPKRGIGD 426

Query: 451 DDIFKICT-QRHETETVYEY-------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             + ++       + ++++            +     +    +  I EL   +++ S ++
Sbjct: 427 TTLSRLNEIATASSRSLWDVLSESQKGFPDLSATARRRLGEFVSLIRELQE-SEYESLYE 485

Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISE 553
               ++       +  S    E     + L E LN           E+    SL   ++E
Sbjct: 486 QAADVVKRSGISAEIFSDKSIEGISRQENLKELLNGIEEYGTSYAEERGEKPSLGTFLNE 545

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +               + V +MTVH AKGLE   +F+V     +F               
Sbjct: 546 VVLLTDQDT--EGVVGDYVTLMTVHAAKGLEFKHIFIVGMEENLFPSMMN---------- 593

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                      +   EE  RL YV +TRA +   I   +  S  
Sbjct: 594 -------------------------ATEQGLEEERRLFYVAITRAKESCHISFAAERSRN 628

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            ++ +      +      D+   + ++   +        E   H   +   ER    + +
Sbjct: 629 GRTERSRPSRFLQ---ELDDAYVERRVPQEMLGGHSQGDELPIHFSRSDAFERLPQPEPI 685

Query: 734 MDE 736
              
Sbjct: 686 RRR 688


>gi|123967864|ref|YP_001008722.1| UvrD/REP helicase [Prochlorococcus marinus str. AS9601]
 gi|123197974|gb|ABM69615.1| UvrD/REP helicase [Prochlorococcus marinus str. AS9601]
          Length = 802

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 101/569 (17%), Positives = 190/569 (33%), Gaps = 96/569 (16%)

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSL-TEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
           +R    +   HIL+DE QDT+  Q+E+I+ +   +    K  +   R++F VGD  QSIY
Sbjct: 245 VRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWEDRSIFVVGDADQSIY 304

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF  A+ + ++  +   +    +   K S+I+L  ++RS+++IL   + +          
Sbjct: 305 SFRAADFRILIGFQEDFKTSIND-DTKSSLIKLEENYRSSSNILDAANSLIENNSERIDK 363

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              +T                                +  +  S  D + +       A 
Sbjct: 364 VLKATK----------------------------EKGELLTLLSCDDEISE-------AE 388

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I ++        N   +    K+  +L R R  + ++          ++I     
Sbjct: 389 AITNKIKSL--------NNYNQNPIWKNFAILYRTRAQSRVLEESL----VRWRIPYTIF 436

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                 D   IKD +A  + +++  D++S + ++  P     +  I K+          +
Sbjct: 437 GGLRFYDRREIKDAIAYLKVLVNSSDNVSLLRIINVPRRGIGKTTIQKLNELSNRLNIPL 496

Query: 467 YEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E +    +                  +++L+   +   P     LIL         +S 
Sbjct: 497 WEVLNDKQSLEETIGRSSKGINKFTAVMNDLLCYLENSGPAQLLQLILEKSGYLSDLLSN 556

Query: 521 FGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMT 576
              E  D    L E +N   + E+ + S   ++   L     T        N N V +MT
Sbjct: 557 GSEESEDRRNNLQELINAATQYEEETESG--DVEGFLSTAALTTDNDTKKNNPNSVTLMT 614

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE   VF+      +F          +                           
Sbjct: 615 LHNSKGLEFQNVFITGLEQGLFPSHRSIDTPSL--------------------------- 647

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                   EE  RL YVG+TRA +++ +             + T   +       D    
Sbjct: 648 -------LEEERRLCYVGITRAKERVFLSHARERRLWGGMREATIPSIFLSEIPEDLMDG 700

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725
           ++  T   +    +  +  T    N P E
Sbjct: 701 ELPQTGGASIRRDLHLDRLTRVDRNNPNE 729


>gi|254281652|ref|ZP_04956620.1| UvrD/REP helicase [gamma proteobacterium NOR51-B]
 gi|219677855|gb|EED34204.1| UvrD/REP helicase [gamma proteobacterium NOR51-B]
          Length = 1113

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 134/860 (15%), Positives = 282/860 (32%), Gaps = 98/860 (11%)

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
              + L++   E  ++     + + ++  L    L   L AH     ++   +D   + + 
Sbjct: 330  ADDSLRREWVELRRLPSMDASAEGWQLVLHLSHLLPVLQAHLLLVFRQRSQVDHAHVALA 389

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
                L   +    +  ++D ++ HIL+DE QDTSL Q+ ++  LT  +    +  + PRT
Sbjct: 390  AEMALGDEEAPTDLALRLDYQLEHILVDEFQDTSLPQFRLLERLTRGWQEHNSGAAIPRT 449

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            LF VGD  QSIY F  A  +  LR +         +      + L  +FRS A I+  V+
Sbjct: 450  LFIVGDGMQSIYGFRDANVELFLRARTR-----GISDIPLVPLYLSRNFRSQAGIVDWVN 504

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
              FS     Q                    G V       ++  +       +       
Sbjct: 505  ATFSRLFPEQE---------------DSVKGGVVHSPAEATREKTSGAAVSVALFPKQRG 549

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                   ++ A  IA  I+++   +   S           I +L R R +   +    + 
Sbjct: 550  -------AVEASFIAEQIADIQAHEPTAS-----------IAILGRTRSNLQPVIHALKA 591

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  +   G D   L + + I DLM+L R++ +  D ++ + +L++P       D+  
Sbjct: 592  ----RGLPFTGRDLDPLDESVVITDLMSLCRWLANPADSVAALGLLRAPFCGLRLADLQT 647

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            +         +   +        +       ++   +  A+         + +     R 
Sbjct: 648  LLEGVARPLPLLAVLDAAPARLHAAEAARATHLRTTLSWAREKRGRLALDIWIEQIWQRL 707

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               +    + +     F +     E+         I+ LE     +     A    + +M
Sbjct: 708  AMSAVTPVDRLIEARAFFDLLREAERQGVG---LDIAWLEYEVARLYAPQGAQQTSIELM 764

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS--RNNIVS 633
            T+H AKGLE   VF+        +         +    + P + I    S       +  
Sbjct: 765  TLHKAKGLEFDYVFIPRLDRPSRADTRQLLSWNLHQGPEGPEVLIAADDSSENGDPTLYQ 824

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
             L+   ++ T+ E  RLLYVG+TR   ++ +     +  ++         +       DE
Sbjct: 825  YLVWLQRQRTEAEIRRLLYVGITRGRRRVWLSGEVESEGQEYRMPGEKSLLGMVISATDE 884

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             V       S               P      R +++ +  +   +   L +  + +I  
Sbjct: 885  VVDFSTGPGSTEP----------IEPSPAVFMRLKSVPRGREVDSVNAGLSNANRPEILA 934

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE------HKRKNFITS 807
                                         G  +H+ L+++   PE       +    I  
Sbjct: 935  VNDNRVD-------------------RAVGTAMHRGLELVARYPELPAQCTAQLSTAIRY 975

Query: 808  YCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCD--SYSEVSVSGKINCPKKDIII 864
               ++  +   +  +  +  +  + L +      ++    ++ E+++        + +  
Sbjct: 976  SLLQSGLVGDIEAAQQRVEWLLNQALGDATGRWILAQHEEAHCELAIVSGSGEFGESV-- 1033

Query: 865  SGRIDQISISQ--QNIFIFEYKTHHHVPQEIEH-----IPYTHIAQLSIYEKILKDSYPN 917
               ID+  + +     +I +YKT      +        +   +  QL  Y  I++    +
Sbjct: 1034 ---IDRTFVDRATGERWIIDYKTSGPGEGQSVESFYSYLSARYKDQLKRYANIMEALTAS 1090

Query: 918  -KSLVCLLIYVSEPKVFIIP 936
               + C L   + P +  + 
Sbjct: 1091 PMPVRCGLYCPAVPAIIEVD 1110


>gi|297380667|gb|ADI35554.1| DNA helicase II [Helicobacter pylori v225d]
          Length = 681

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 96/572 (16%), Positives = 182/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+ +IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSVEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVGFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIK 486
                 +L  P     +     I +    E   + E ++      K            I 
Sbjct: 388 RFFIKRVLNKPSRGLGKITQEWIFSLLDGEGLNLEEALKLGVFKGKLNPKNEHALNKFIT 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F    L      + +       E    + E L     + + + +
Sbjct: 448 MIGRLRE-AFEISVEEFCARFLEETNLLKSYEKEDNYEEREGFVKELLALVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVQERSYFGRKISCSPSVFLEEAKLLKQDNPP 619


>gi|269302561|gb|ACZ32661.1| ATP-dependent DNA helicase pcrA [Chlamydophila pneumoniae LPCoLN]
          Length = 639

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 98/548 (17%), Positives = 176/548 (32%), Gaps = 116/548 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +   LDF+DL+  T  LL++   +  +  ++      +LIDE QDT+  Q
Sbjct: 167 IYQEYQKKLIEANALDFDDLLFLTVRLLRESPEAQELYNQL---WKALLIDEYQDTNHAQ 223

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +++ L++            R +FAVGD  QSIYS+ GA    +L  +           
Sbjct: 224 YTLMQLLSKQ----------HRNVFAVGDPDQSIYSWRGANIHNILNFENDYPN------ 267

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RS  +IL   + +     +       S                     
Sbjct: 268 --AKVLCLEENYRSYGNILNAANALIKNNASRLEKELRSVK------------------- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +   +    D           A  +A  I  +              I+
Sbjct: 307 --------GPGEKIRLFLGSTDREE--------ADFVAAEILQLHRVG---------NIK 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +  R    +              +I               I+D++A  R  +S+ 
Sbjct: 342 LRDICIFYRTNSQSRTFEDAL----LRRRIPYEIIGGLSFYKRKEIQDILAFLRIFISKS 397

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ--------KFANCGISKFQH 483
           D ++F   +  P        IF +      +   + +  Q        K +       Q 
Sbjct: 398 DIVAFDRTVNLPKRGIGSTTIFALTQYAIAQGLPILKACQQALDTKDVKLSKKQQEGLQE 457

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQ 541
            +    ++ H     S  DF   ++      +          +    L+E  +  L +EQ
Sbjct: 458 YLALFPQIEHAYNTLSLRDFIESVVRITGYLEILKEDADTFKDRKSNLEELYHKALESEQ 517

Query: 542 NSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +  + L+  + +L        +  +A  + V +MT+H  KGLE  V FLV    Q+  H
Sbjct: 518 QNPKTHLELFLDDLALKGSDDDQNLTA--DRVNLMTLHNGKGLEFRVSFLVGLEEQLLPH 575

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            +                                          EE  RL YVG+TRA D
Sbjct: 576 ANSLGGTY---------------------------------ENIEEERRLCYVGITRAQD 602

Query: 661 QLIICKHS 668
            L +    
Sbjct: 603 LLYLTAAQ 610


>gi|284045042|ref|YP_003395382.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283949263|gb|ADB52007.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 746

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/492 (17%), Positives = 165/492 (33%), Gaps = 88/492 (17%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   YE    +   +DF+DL++   ++L   ++   +R +      H+L+DE QD
Sbjct: 176 QTVADVYKLYESELHRMNAMDFDDLLVRAVNVL---ELFPEVRRRYADNFRHVLVDEYQD 232

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+  ++ +  +           R L  VGD+ QSIY F GA+ + +L  +      
Sbjct: 233 TNHVQYRWLQLIAGE----------HRNLAVVGDDSQSIYGFRGADIRNILDFEDDFP-- 280

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +++L  ++RST  IL   + V       +                      
Sbjct: 281 ------DAKVVKLEQNYRSTQTILDAANAVIRNNRGQREK-------------------- 314

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +LW                      D   +       AR +A  I  ++          
Sbjct: 315 -ELW-------TDLGIGDPIKVRELDDEHAE-------ARFVAGEIERIVDEG------- 352

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +   +I V  R    + ++           +I           +   IKD +A    
Sbjct: 353 ---VSRNEIAVFYRTNAQSRVLEDTL----VRAQIGYQVIGGTKFYERAEIKDAIAYLTM 405

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQK------FANCGISK 480
           +++ +D +SF  +  SP     +  + + I        T++E   +              
Sbjct: 406 LVNPQDVVSFTRIANSPRRGIGQTSLSRVISWANTAGITIWEAALEPDSVPGLGTAARKS 465

Query: 481 FQHVIKYIHELIHIAQFCSP-HDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
           F   +  +  L   A    P  +    +L      +   +    E    I+ L+E +N  
Sbjct: 466 FHRFMGAMRILGERAAANPPVSELLKEVLSESGYLEALEADRTIESQGRIENLEELVNVA 525

Query: 537 LRNE-----QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
              +     +    SL   + ++        R        V +MT+H AKGLE P+VFL+
Sbjct: 526 AEYDGSVDLREEAPSLAGFLQQIALVADADGRRDDEG--LVTLMTLHNAKGLEYPIVFLL 583

Query: 592 DTGSQVFSHKHI 603
                VF H+  
Sbjct: 584 GCEEGVFPHQRA 595


>gi|213649043|ref|ZP_03379096.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
            serovar Typhi str. J185]
          Length = 1104

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 120/848 (14%), Positives = 266/848 (31%), Gaps = 118/848 (13%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417  QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    +   + ++           V          +    P    W    +S       S
Sbjct: 467  AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344  ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517  YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575  -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459  QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 632  --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 683

Query: 517  FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                        + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 684  LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 737

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 738  IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 784

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
            + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 785  ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 844

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFS 745
                D    +  +    ++D       +T     +       E   + +          +
Sbjct: 845  GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVT 904

Query: 746  PI----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                          D+     ++ + +    +    +     +  + G  +H L + +  
Sbjct: 905  SYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDF 964

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV--- 849
                  +           +          L ++  +  N     ++     +   E+   
Sbjct: 965  TQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFY 1024

Query: 850  -SVSGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTH 886
              ++  +   + D +I                       G ID +   +   ++ +YK++
Sbjct: 1025 LPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSN 1084

Query: 887  HHVPQEIE 894
                    
Sbjct: 1085 WLGEDSAA 1092


>gi|261405600|ref|YP_003241841.1| recombination helicase AddA [Paenibacillus sp. Y412MC10]
 gi|261282063|gb|ACX64034.1| recombination helicase AddA [Paenibacillus sp. Y412MC10]
          Length = 1373

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 129/840 (15%), Positives = 259/840 (30%), Gaps = 119/840 (14%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEE 64
             + I  D           + +  +++M+ G PT         L+   +L +A  T   E 
Sbjct: 225  VQSILADARLALNGAAGLLQQAKAIAMQPGGPTPYADNLDEDLRLVASLLEAIDTSPWES 284

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI-------KIRDRFNTY 117
             + +       +  + +K+ +  E+ ++  +L++ +KK  +E                 +
Sbjct: 285  LYGIFREASFGKLKSVRKDEVLPELQEQVKELRDNVKKIVNELKNALFGRPASEFLRELH 344

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD------VSAWIRY 171
                  +            Y EAK    ++DF DL      +L+  D      + +    
Sbjct: 345  TAAPLMMELAETVIAFGERYREAKAAKGMVDFNDLEHYCLHILRHPDSVPGHMMPSDAAM 404

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            +  ++ + +L+DE QDT+ +Q +++R ++ +          P   F VGD KQSIY F  
Sbjct: 405  EYREQFDEVLLDEYQDTNSVQEDIVRLISREM---------PGNRFMVGDVKQSIYRFRL 455

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSE 289
            AEP   L + +      T   Q    I+L  +FRS  +++  V+ +F     E+   ++ 
Sbjct: 456  AEPGLFLDKYKTFSS-GTGTSQTGIRIDLARNFRSRMEVVDAVNLLFRQIMNESVAEIAY 514

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVV-----------SQHDSQCNPQQESWTSYFDSLPQ 338
            D    +   +S   Q         +             +  S  +  +E          +
Sbjct: 515  DERAELVCGASFPEQETNGGANPYMPEMLLIDRAGKGPEEQSDESASEEDGVQLEAEALE 574

Query: 339  ESSASILARRIAYTISNMIGTD------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
              +A + AR IA  I  M G                R     D+++L+R      +   L
Sbjct: 575  METAQLEARAIARKIREMTGESGKPLMVYDKGLKTMRPAGYGDMVILLRS---AMVWAPL 631

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                     I   G           ++ +++L + I +   D+    +L+SP+   SE++
Sbjct: 632  IIEELRLEGIPAFGEQNKGYFQATEVEIILSLLQVIDNPRQDIPLASVLRSPILGLSEEE 691

Query: 453  IFKICTQRH--------------------------------------------------- 461
            + ++                                                        
Sbjct: 692  MAQVRLCAKGTYYDALKAAVSLSVAPPVMDPARPMGFVDGKWTPGAGLEGLAEAAAGHEL 751

Query: 462  -ETETVYEYIQKFANCGISKFQHVIKYIHELIHI-------AQFCSPHDFFTLILGAKKG 513
                 + +         I     +   +   +         A+  S  D    I      
Sbjct: 752  VAGSHLSDAPLTAEGHAIEISAELGAKLGLFMDRLQRWRQEARQGSLSDLIWGIYSETGY 811

Query: 514  RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQ-----YPPTIKRAHS 566
                     G +    L    +  ++ EQ++    L   ++ + +               
Sbjct: 812  LDWVGGLPGGRQRQGNLTALYDRAVQYEQDTASRGLFRFLTFISRLRERGGDLGTAGGTE 871

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +  N VR+MT+H +KGLE PVVF+                 +   L   P       +  
Sbjct: 872  SQGNAVRLMTIHKSKGLEFPVVFVAGLSKNFNQQDLNAPFLMHKELGFGPKFVDEGMRVS 931

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                    + +  +     E  R+LYV +TR  +++I+        +K S          
Sbjct: 932  YPTLPNLAIRRRSQLELLAEEMRVLYVALTRPKEKMILVGTVKDLPKKVSAWAQADFNPE 991

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                +    +     + I          S    +    E   +     D  +    + +P
Sbjct: 992  LLLPDYVLARGRSYLDWIGPAVIRHPSASPLRGQAGLPEETSSRALAADRSQWIFSIETP 1051



 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 29/294 (9%), Positives = 83/294 (28%), Gaps = 45/294 (15%)

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +     +     + + T+           WS  +   + +  + ++ ++     +     
Sbjct: 1082 LEPVPESAIAEAEEEGTDVQRASIDQRLSWSYRYEAVSQISAKTSVTEMKKLLALQDSPS 1141

Query: 745  SPIKNDINEPYILNPS-----TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL--- 796
              +  +         S     +     +       +      RG + H ++Q +      
Sbjct: 1142 LDLLEERAVKRQSRESIDASTSFTLSLRRPKFMESTKLTPAERGTVYHTIMQHLPLQRLE 1201

Query: 797  ----PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSV 851
                P  + +  I  Y  +   +   +        I+ L +  +    + + D + E+  
Sbjct: 1202 DAAEPTAEIEETI-RYLVEKEIITGEQASAVEAAEISSLFDCDLGKRVLSAEDVWREMPF 1260

Query: 852  SGKINC---------------------------PKKDIIISGRIDQISISQQNIFIFEYK 884
            S  +                               + ++I G +D +      + + +YK
Sbjct: 1261 SYALPAAEAYQGLAFLDPISEHSAQGLPEMELLRDETVLIQGVVDCMFRHNGRLVLLDYK 1320

Query: 885  THHHVP--QEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935
            T   +     +  +   +  QL +Y K L+D    + +    L +        +
Sbjct: 1321 TDRVLEHRGGLTALADQYRFQLDLYAKALEDIL-GEPVHEKWLYFFDGGHAVQV 1373


>gi|78189378|ref|YP_379716.1| DNA helicase II [Chlorobium chlorochromatii CaD3]
 gi|78171577|gb|ABB28673.1| ATP-dependent DNA helicase PcrA [Chlorobium chlorochromatii CaD3]
          Length = 743

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/640 (16%), Positives = 200/640 (31%), Gaps = 128/640 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  + + Y +  K+N  LDF+DL+I   +L         + +++ +   +I+IDE QDT+
Sbjct: 170 AAQVYSLYCKKLKENNALDFDDLLIKPLELFNAHPD---VLHELQELFRYIMIDEYQDTN 226

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+ V + L           +  R +F VGD+ QSIYS+ GA+   +L  +        
Sbjct: 227 RVQYLVAKML----------GARHRNIFVVGDDAQSIYSWRGADISNILNFQDDYH---- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                    +L  ++RST +IL   + V    +        S           G+  TV 
Sbjct: 273 ----DAQTFKLVENYRSTGNILKAANSVICRNQRQIKKELVSHR-------HAGEPLTV- 320

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                       +  +    A ++A  I  M  + T        
Sbjct: 321 ---------------------------MEAFNERNEAEKVADRIRTMRMSGTN------- 346

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +   +  R    + ++  + R      +I               IKD +A  RFI+
Sbjct: 347 --DYRSFAIFYRTNAQSRVLEDIMR----QQRIPYRLFGSVSFYKRKEIKDAVAYLRFIV 400

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFANCGIS-----KFQH 483
           ++ D  S + ++  P     +  I K+         ++YE I + A  G           
Sbjct: 401 NERDSESLLRIINFPPRKIGDVSIAKLRDFAEVRHISLYEAIHRAAEAGFPARLLNALAS 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               I  L  +A   + +D    +           +    E     + L E L+      
Sbjct: 461 FTSVIEALREMATRGTVYDVLNELFTLTSIPLLLQAENTPESLARHENLQELLSMARDFA 520

Query: 541 QNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++    SL + +  +             + N V +MTVH +KGLE PVVF+     ++F
Sbjct: 521 DHNPDGGSLGDFLENISLASD--YDETQESDNYVSLMTVHASKGLEFPVVFITGLEERLF 578

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                +   +                                           YV MTRA
Sbjct: 579 PLHTYEPEELEEERRL------------------------------------FYVAMTRA 602

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +++ +    +     + +Q      + +   +  + +  +L +          +     
Sbjct: 603 QEKIFLSYAKSRYQYGQLHQSIASTFISEIDASIVQSEGGRLLS----------DRRAPR 652

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
              TP                     +      +    ++
Sbjct: 653 EATTPQNHAAAPAMRRPTTSGMAPSSASSPTAESSSPSIS 692


>gi|52843012|ref|YP_096811.1| ATP-dependent DNA helicase Rep [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630123|gb|AAU28864.1| ATP-dependent DNA helicase Rep [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 665

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 106/684 (15%), Positives = 223/684 (32%), Gaps = 140/684 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + NE    +     P    +   +  + +L +       + +   L+        E+   
Sbjct: 58  AANEMRARVSA-FLPAVSRRGLKVATFHTLGLSI-IKRDVSRCD-LKPGFSIFDSEDCLQ 114

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-- 125
           +L  F            + +  +      ++ + K Q +    ++     ++        
Sbjct: 115 ILRGFL----------PVNKATD------RDFILKVQQQISLWKNNLLNPELILQNPPET 158

Query: 126 -SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                A  +   Y+EA K    +DF+DLI    DLL      A +      +I H+L+DE
Sbjct: 159 LLCDEALTIYPRYQEALKVYNAVDFDDLIRLPVDLLNDH---ADVLEYWQNKIRHLLVDE 215

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD++  Q+ +++ L                   VGD+ QSIY++ GA+P+ + + ++  
Sbjct: 216 YQDSNTSQYLLVKKLAG----------VRAHFTVVGDDDQSIYAWRGAKPENLAQLQKDF 265

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +          II+L  ++RST+ IL   + + +  ++       S             
Sbjct: 266 PR--------LKIIKLEQNYRSTSRILHAANHLIAHNQHLFEKKLWSDL----------- 306

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            G  +L   V  + +                          A  +   I+++I       
Sbjct: 307 -GHGELLRVVSCKDEQD-----------------------EAEHV---IADLISH----- 334

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
              +      D  +L R      +   + R     + I    +        L ++D+ A 
Sbjct: 335 -KLRNRTNYSDYAILYRGNHQARIFEKVLR----HHGIPYHISGGQSWFAKLEVRDIFAY 389

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF------ANCG 477
            + + ++ DD +F+  + +P     E  +  +    +    ++Y            A+  
Sbjct: 390 LKLLCNEADDAAFLRAITTPKRGIGESSLDALGRYAQSRGISLYHGSDHLALSEFVADKQ 449

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-----IDVLDEF 532
              F     ++ ++       S  +    ++           +  +       +D + E 
Sbjct: 450 RMIFHDFKLWMEDIKKRISSDSVLEHLRQMVEDIGYEAYIYEQCDSPAKAQKKMDNVWEL 509

Query: 533 LNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           L +  R        SL +++++L       +    ++ + V++MT+H +KGLE P V+LV
Sbjct: 510 LEWVNRLLNKEPEQSLMDVVNKLILIDILEQSD-ESSSDVVQLMTLHASKGLEFPFVYLV 568

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      +     EE  RL 
Sbjct: 569 GMEEELLPH-----------------------------------RVSIDDDQIEEERRLA 593

Query: 652 YVGMTRASDQLIICKHSNTSNEKK 675
           YVG+TRA   L            +
Sbjct: 594 YVGITRAQKGLCFTLAKQRRRAGE 617


>gi|226305706|ref|YP_002765666.1| ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
 gi|226184823|dbj|BAH32927.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
          Length = 1130

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 137/1083 (12%), Positives = 264/1083 (24%), Gaps = 234/1083 (21%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
              +  + +      +LW + +  VS  +  +      G+ T    A   Q A      E+
Sbjct: 142  LPIEPSATLLS-ETELWQVAHRVVSGWDSDLDTDKNPGSITETVLALAGQLAEHLVDPEQ 200

Query: 65   RFSL---LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                   L     T    P+                             ++  N   +  
Sbjct: 201  LLEAHTELDKLIHTLPAGPK-----------------------QRGGPSKELLNYLDVQH 237

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              +  L L   L        ++   LDF   +  +  +  +      +     +    +L
Sbjct: 238  KRIELLPLVARLAE----TLRREGALDFGSQMSLSARVASEHPE---VGQTERERFRVVL 290

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   Q  ++ SL      G+        L AVGD  QSIY + GA    + R  
Sbjct: 291  LDEYQDTGHAQRVLLSSLFGGGTDGRLA------LTAVGDPMQSIYGWRGASAANLPRFA 344

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                      G+    +EL  S+R+  + L + +   +                  R+  
Sbjct: 345  TDFP---LANGKPAPTLELLTSWRNPPEALELANLSSAPLRRRG------VAVSTLRARP 395

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V+L      + +                           + +A  I+       
Sbjct: 396  GAVAGDVRLALLGDVEQER--------------------------QWVAEKIAEEYEAAR 429

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                            VL+R+  D   +    R       + V       L     + D+
Sbjct: 430  AEDRPTPTA------AVLIRRNADAAPLAEALRS----KGLPVEVVGLGGLLHTPEVADV 479

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            +A+ R +       + V +L    +     D+  +  +  E      Y    A       
Sbjct: 480  IAMLRVVADPLAGSAAVRLLTGARWQIGAKDLAALSQRSRELAISAGYGTAGAVTDAEAL 539

Query: 482  QHVI---------------------------------------KYIHELIHIAQFCSPHD 502
               +                                         +  L          +
Sbjct: 540  TSAVHDALPGENAEQAGLVDSISDPGPAERYSALGYTRINAIAAELASLRERIGQ-PLTE 598

Query: 503  FFTLILGAKKGRQQFISRF-----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                +        +  +R      G    + LD F +          ++L  +++     
Sbjct: 599  LVAEVERVLGIGIEAGARTRVGVVGTAGREHLDAFADVVANYATRPTANLTGMLAFFAAA 658

Query: 558  PPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI----- 608
                            + V+I+TVH+AKGLE  VV +      VF         +     
Sbjct: 659  EQIEKGLTPGEVEVAPDRVQILTVHSAKGLEWEVVAIPHVSDGVFPSSTASGSWLGALAE 718

Query: 609  MPSLNDDPGIPIWI-------------PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +P                            K   N ++   K L     +E  RL YV +
Sbjct: 719  LPPSLRGDRAVDADSADGVPVLDLEELYNRKDLENAITAHKKALSNRRLDEDRRLFYVAL 778

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWY--DMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            TR    L I  H    +  +    + +  ++      +++  ++         +EW    
Sbjct: 779  TRTERALFISAHHWAESGAEPKGPSEFLDELHQMVTADNDAGEEDSRGAIGVVEEWAPAP 838

Query: 714  WSTHHPENTPLEREET-------------------------------------------- 729
                        R                                               
Sbjct: 839  EPDTENPLAATPRTAQWPPDPLGARRGAVEAGAASVLSALASLPQDSEEAEEPEDDPENW 898

Query: 730  -------IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
                   + +         ++  P +  + +   L     +   +         N    R
Sbjct: 899  ASDVDVLLAEREARANARAEVILPAQLSVTQLVDLKADPDELAARLRRPLPYPPNPLARR 958

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            G   H  ++  F        + +       A          L+      L +P       
Sbjct: 959  GTAFHAWIERRFGATRLLDLDELPGAADTGAGPETD-----LVKLQDAFLRSPW------ 1007

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHI 901
              + S + V           ++ GRID +         + ++KT        E      +
Sbjct: 1008 -ANRSPIEVEVPFETSIAGTVLRGRIDAVFADPDGGWTVIDWKTGAEPSTANEDAV---V 1063

Query: 902  AQLSIYEKILKDS-------------YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
             QL+ Y     +              +P   +     YV   +          +A A + 
Sbjct: 1064 MQLAAYRVAWAELMSARARSAGRNEQFPADKVRAAFHYVRSGRTIAPENLPDGEALARLI 1123

Query: 949  TKI 951
               
Sbjct: 1124 RTA 1126


>gi|120402801|ref|YP_952630.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119955619|gb|ABM12624.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
          Length = 1086

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 137/1027 (13%), Positives = 281/1027 (27%), Gaps = 171/1027 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +    +     L       +       +           + +         E+  + ++ 
Sbjct: 111  TISTYHAFAGNLLREFGLLLPVEPDTRLLGETELWQLAFRVVCAHPAALDTEKSPASITD 170

Query: 72   FFLTQKFTPQKNII-TQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              L       ++++ T  +     +L +  L      + + R          +T    T+
Sbjct: 171  MVLRLAGQLSEHLVDTAALRDTHVELERLVLNLPAGRYQRDRGPSQWLLRMLATQTERTM 230

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               L        ++  V+DF   + +   L  +      +  ++ Q    +L+DE QDT 
Sbjct: 231  LVPLVDALHRRMREERVMDFGMQMASAARLAAQFP---QVGAQLRQRYRVVLLDEYQDTG 287

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q   + SL                L AVGD  QSIY + GA    + R          
Sbjct: 288  HAQRVALSSLFG------GGADDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFP---L 338

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
            + G     +EL  S+R+  ++L + ++V             S      +     + G+V+
Sbjct: 339  SDGTPAPTLELRTSWRNPPEVLHLANEVSVDARRR------SVAVRALQPRPGAEPGSVR 392

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                   + +                             +A  I+               
Sbjct: 393  CALLSDVERERD--------------------------WVADQIARRWHAGIEADGAAPT 426

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                    VLVR+  D   +            ++V       L     + D++A+ R   
Sbjct: 427  A------AVLVRRNADAAPMADAL----TRRGVAVEVVGLAGLLAVPEVADVVAMLRLAA 476

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQR----------------------------- 460
                  + V +L  P +     D+  +  +                              
Sbjct: 477  DPTAGAAAVRVLTGPRWRLGARDVAALWRRAVALVEPGASSDGESATAGIVAQLGPDADA 536

Query: 461  ---HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT--LILG-AKKGR 514
                +          ++  G ++   + + +  L    Q   P        +LG   + R
Sbjct: 537  ACLADAICDPGPATAYSEAGHARIVALGRELTGLRAHLQSPLPDLLAEVRRVLGIDTEVR 596

Query: 515  QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHN 570
                   G    + LD F +          +++  L+  L+              + + +
Sbjct: 597  AAQPVSAGWSGTEHLDAFGDVVADFAARGGATVSALLGYLDIAEQVENGLAPAEVTVSAD 656

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP----------- 619
             V+I+TVH AKGLE  +V +     +VF      +  +  + +  P +            
Sbjct: 657  RVQILTVHAAKGLEWQIVAVPHLSGRVFPSTASPRTWLTDAADLPPLLRGDCATVSEHGV 716

Query: 620  ------IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                      +    + I     + L++   +E  RLLYV +TRA   L++  H   + E
Sbjct: 717  PVLDTSDVSDRKGLSDKIYDH-KRSLEQRRTDEERRLLYVAITRAEHTLLVSGHHWGATE 775

Query: 674  KKSNQRT------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
             K    +                      V          +   L + + +  W     +
Sbjct: 776  SKPRGPSTFLCELKDVIDASVQSGSPCGAVDVWADAPADGEPNPLRDRVVEAVWPEDPLA 835

Query: 716  THHPENTPLEREETIKQLMDEQKIP----------------KKLFSPIKNDINEPYILNP 759
                      R  T          P                ++  +  +     P  L+ 
Sbjct: 836  GRRAHTDHGARLVTTAMSTAGGAGPQPDVHGWTADVDALLAERELAAQRPVPPLPLQLSV 895

Query: 760  STIDTKGKTN--------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
            S +   G+                 +     G   H+ +Q  F       +         
Sbjct: 896  SAMVELGRDPEAVAQRLQRRLPRRPDAQALLGTAFHEWVQRYFQA-----EKLFDLDDLP 950

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
             A     ++   L         +P           + + V    +      ++ GRID +
Sbjct: 951  GAVDADRQDRGELEELQAAFALSPWAA-------RTPIDVEVPFDMMIAGRVVRGRIDAV 1003

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSE 929
                  + + ++KT    P   E + +    QL++Y       +  P  S+     YV  
Sbjct: 1004 FADGDGVMVVDWKTG-EPPATEEELQHN-AVQLAVYRLAWARLHDCPVSSVRAAFHYVRS 1061

Query: 930  PKVFIIP 936
             +  +  
Sbjct: 1062 GRTVVPD 1068


>gi|170717349|ref|YP_001784458.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 2336]
 gi|168825478|gb|ACA30849.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 2336]
          Length = 670

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 109/640 (17%), Positives = 211/640 (32%), Gaps = 121/640 (18%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             IT ++ K+  +L ++   +   +                    T AK     Y    +
Sbjct: 118 KEITADLLKEDKELLQETVSAISRWKNDLILPQQAFTQVRDSKQQTFAK-CYERYNNQIR 176

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              VLDF+DLI+    L  +      +R K  ++I ++L+DE QDT+  Q+E+++ L   
Sbjct: 177 AYNVLDFDDLIMLPTLLFLQN---QEVRSKWQEKIRYLLVDEYQDTNTSQYELVKLLVGQ 233

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                           VGD+ QSIYS+ GA+P+ + R K    +          +I+L  
Sbjct: 234 ----------HTHFTVVGDDDQSIYSWRGAQPQNMARLKNDFPQ--------LQVIKLEQ 275

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS   IL   + + +  ++       ST     +                        
Sbjct: 276 NYRSNQRILHCANILIANNDHVFEKRLFSTLEQGEKL----------------------- 312

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                        + +  +    A  +            + ++        +D  +L R 
Sbjct: 313 ------------QVLEAKNEEHEAELVV---------GELITHRFMYKTNYRDYAILYRG 351

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + L   +        +I    +          IKD+MA  R +++Q+DD + + ++ 
Sbjct: 352 NHQSRLFEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRVLINQDDDAALLRIIN 407

Query: 443 SPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIA 495
           +P        + K+    + +  ++++ I  F           +  Q    +I EL    
Sbjct: 408 TPKREIGSVTLAKVGKLAQEKHISLFDAIFDFDLIHQLNPKSYNALQGFAYWIVELNDEI 467

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFT----LRNEQNSYSS 546
           Q   P      +L      +       N  I       +     +       +E N   S
Sbjct: 468 QRSEPEQAIKRMLAQLHYEEYLYEHANNPKIAEMQSKNVATLFEWVAVMLKGDEFNESMS 527

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L +++S L       +       N+V++MT+H +KGLE P VFL+     +  H+     
Sbjct: 528 LSQVVSHLTLRDMLERNETDEESNQVQLMTLHASKGLEFPHVFLIGMEENILPHQTSID- 586

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   EE  RL YVG+TRA   L    
Sbjct: 587 ----------------------------------EDNVEEERRLAYVGITRAQKSLTFSL 612

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                   +  +      + +   +D + ++ +   +  +
Sbjct: 613 CKERKQFGEIFKPEPSRFLSELPQDDLQWERNETHATEQE 652


>gi|295397183|ref|ZP_06807286.1| ATP-dependent DNA helicase PcrA [Aerococcus viridans ATCC 11563]
 gi|294974572|gb|EFG50296.1| ATP-dependent DNA helicase PcrA [Aerococcus viridans ATCC 11563]
          Length = 856

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/812 (12%), Positives = 234/812 (28%), Gaps = 137/812 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V+  N             + ++   L            
Sbjct: 45  GAGSGKTRVLTHRMAYILSEKDVNPWNILAITFTNKAAKEMKERVSALVGPDANDMWVST 104

Query: 66  FSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQD-------------EFIKI 110
           F  +    L ++          T     +   L +++ K  +                  
Sbjct: 105 FHAMCVRILRREAEAIGFTRSFTIADPSEQQTLIKRIIKELNLDKDKFSYKMLLGRISDA 164

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++       ++   +     +   +   Y++  +     DF+DLI+ T  L  ++     
Sbjct: 165 KNNLMLPDDYRQNYSGYIEDVVADVYERYQKGLQAAQSFDFDDLIMYTVKLFDQQPD--- 221

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           I     Q+ ++I +DE QDT+  Q+++++ L + F            +  VGD  QSIY 
Sbjct: 222 ILKYYQQKFHYIHVDEYQDTNEAQYKLVKQLGDYF----------HNVCVVGDADQSIYG 271

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++   K         + I L  ++RST +IL   + V +     +  +
Sbjct: 272 WRGANMENILNFEKDYPKS--------TTILLEQNYRSTKNILQAANNVINKNTYRKDKT 323

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW             +  S+    +   + +        
Sbjct: 324 ---------------------LW-------TDNDQGELISYYRAQNERDESN-------Y 348

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I + I   +          +  DI +L R    + ++            +      
Sbjct: 349 VIGKIKDAIKGQSK---------RYGDIAILYRTNAQSRVMEENL----VKANMPYRIVG 395

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   IKD++A  R + +  D+LSF  ++  P        + K+      +  ++ 
Sbjct: 396 GLKFYDRKEIKDILAYLRLLANPSDNLSFTRIINVPKRGIGPGTLDKLNTFANQQGISLL 455

Query: 468 EY-----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           +             G +  +   K +  L    +F +  D    IL      +   ++  
Sbjct: 456 QAATLVDHSPITGKGATNLKAFGKMMANLQAQREFLAIQDLVEEILAQTGYLKDLENQKT 515

Query: 523 NEVI---DVLDEFLNFTLRNEQNSYSSLQELI-------------------SELEQYPPT 560
            E     D + EF++ T   ++   +  ++                     + L Q    
Sbjct: 516 LEADARIDNIHEFISVTQEFDKRWEAEQEDREQAAQIAAQEEADRPTELQAANLNQSDVN 575

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVF-------------------LVDTGSQVFSHK 601
            +           +  +      E   V                    + D  +Q    +
Sbjct: 576 PENNPLNPDGSFNLFDL-EGIQAELDGVIDNNPAEDDALMGFITDLSLVSDLDNQEIDQQ 634

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
               +  + +        ++I        +        ++S  EE  RL YVG+TRA ++
Sbjct: 635 GELTLMTLHAAKGLEFPIVFIIG--MEEGMFPLARAAKEESELEEERRLAYVGITRAEEK 692

Query: 662 LIICKHSNTSNEKKSNQRTWYDMV-YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           L +    +     K         +        +  +  +     +        + +    
Sbjct: 693 LYLTNSLSRLLYGKYQSNPVSRFIAEIDDELLDDSENERSVFQPSGGSQSDLPFGSGSTF 752

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                 +        E+   K  +   K    
Sbjct: 753 AADYASKRKRASNTYERANAKSYYERKKEAKR 784


>gi|288919731|ref|ZP_06414058.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288348920|gb|EFC83170.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 733

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 109/707 (15%), Positives = 202/707 (28%), Gaps = 161/707 (22%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   +        VS  +      + +    +         +       +  
Sbjct: 133 AAGEMKERVEALVGGRARAMWVSTFHSACVRILRSEAARL-----GFASSFSIYDAADAQ 187

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            LL+         P K    + +      LK +L   +        R       + T   
Sbjct: 188 RLLTLVTRDLDLDP-KRHTAKALAVAISALKNELVDWETA------RDRAASHIERT--- 237

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + A Y++   +   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 238 ---VAEVYASYQQRLAQANALDFDDLIMMTVNLLQ---AFPDVAEHYRRRFRHVLVDEYQ 291

Query: 187 DTSLIQWEVIRSLTE------------------------------------DFFVGKNTH 210
           DT+  Q+ ++R L                                         V  +  
Sbjct: 292 DTNHAQYVLVRELVGRPGPAGSAGAGSGAAEGQPGTGGDEGAGPAGAGHGGGGPVPASGA 351

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
             P  L  VGD  QSIY+F GA  + ++  ++             ++I L  ++RST  I
Sbjct: 352 VPPAELCVVGDADQSIYAFRGANIRNIVEFEQDYPN--------AAVILLEQNYRSTQTI 403

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           L+  + V +     +     S                               + ++    
Sbjct: 404 LSAANAVIARNAQRKAKRLWS----------------------------DAGDGERIVGF 435

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
              +   +       A  +A  I  +            ++ +  D+ V  R    + +  
Sbjct: 436 VADNEHDE-------AAFVAEEIDRLSDD---------KLARPADVAVFYRTNAQSRVFE 479

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
            +         +           +   I+DL+A  R + +  D ++   +L  P     +
Sbjct: 480 EIF----IRVGLPYRVVGGVRFYERREIRDLLAYLRVLANPTDTVNLRRILNVPRRGIGD 535

Query: 451 DDIFKICTQRHETETVYEYIQKF-------ANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                I          +             A       +  +  + +L  +         
Sbjct: 536 RAEAMISAFAERERIPFADALARVDEVPGVATRSARSVRDFVALLGDLRDLLPSGPL-AV 594

Query: 504 FTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQ-YP 558
              +L       + ++    E     + L E +       E+    SL E + ++     
Sbjct: 595 IEAVLERTGYLSELVAEDTIEAQGRVENLRELVGVVQEFTERRPDGSLAEFLEQVSLVAD 654

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                    +   V +MT+H+AKGLE PVVFL      VF H                  
Sbjct: 655 ADQIPDDDGSDGVVTLMTLHSAKGLEFPVVFLTGLEDGVFPHLRTLGDPT---------- 704

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                     EE  RL YVG+TRA  +L + 
Sbjct: 705 ------------------------ELEEERRLAYVGVTRARARLYLT 727


>gi|56551470|ref|YP_162309.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543044|gb|AAV89198.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 768

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/630 (16%), Positives = 192/630 (30%), Gaps = 114/630 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y++        DF DL+++   +L +      +         +I++DE QDT+ 
Sbjct: 187 AALYLAYQKRLLSLNACDFGDLLLHMLVILTQH---REVLDSYHDRFRYIMVDEYQDTNQ 243

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +            R +  VGD+ QSIYS+ GAE   +LR +         
Sbjct: 244 AQYLWLRLLAQ----------KNRNICCVGDDDQSIYSWRGAEVANILRFEEDFP----- 288

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II L  ++RST  IL     + +      G +                     L
Sbjct: 289 ---GAKIIRLEHNYRSTPQILGAASGLITHNNARLGKT---------------------L 324

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W     +   +       W    +           AR++   + N+   +   +      
Sbjct: 325 W---TERDQGEKVKIIGVWDGAEE-----------ARQLVADVQNLRRANIPLNK----- 365

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                + +L+R +  +     +         +       F   +   I+D +A  R I  
Sbjct: 366 -----MAILIRAQFQSREFEDIFIA----KNLPYRIIGGFRFYERAEIRDALAYLRVIAQ 416

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFANC------GISKFQH 483
             DDL+F  ++  P     +  + K+      +   + E  +K  +              
Sbjct: 417 PTDDLAFERIVNVPKRGIGKKAMEKLYQAAFLDRIPLAEAAEKLVSEKTLGSKITQSLGQ 476

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           ++    E        S  D    +L     +    +    +    L+         E+  
Sbjct: 477 LMNDFSEWRKSLSVVSHADVTRKMLDESGYKAMLRAVNDVQSAGRLENLTELARAMEEYD 536

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                +L S LE     +   +    +++ +MT+H AKGLE   VFL      VF  +  
Sbjct: 537 -----DLGSFLEHVSLVMDHENDPIDDKITLMTMHAAKGLEFDHVFLPGWEEGVFPSQRS 591

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                + S                                 EE  RL YVG+TRA     
Sbjct: 592 LDEGGLNS--------------------------------LEEERRLAYVGITRAKKCCT 619

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           I   +N     +    T    + +   +    K +    +    +  A + S +   N+ 
Sbjct: 620 IFHAANRRVYGQWIASTPSRFISELPDDHIEEKSLLRKKTPIWRDIWAEDRSKNPAYNSA 679

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINE 753
            E      QL   +    +         + 
Sbjct: 680 KEAITPPWQLASRRGAGWQRAQKAAASPSP 709


>gi|167631017|ref|YP_001681516.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium
            modesticaldum Ice1]
 gi|251764526|sp|B0TDI0|ADDA_HELMI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|167593757|gb|ABZ85505.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium
            modesticaldum Ice1]
          Length = 1396

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 133/838 (15%), Positives = 263/838 (31%), Gaps = 132/838 (15%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPT---ILKKAQTLQQASQTQCIEERFSLLS 70
              + +++        S + + +SL  + G P        A               ++ L 
Sbjct: 254  AALREEMSIDLAEVESLLVRALSLCRQPGGPAAYGDAVTADLQLTQDLHLAAGRSWTQLH 313

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY----------KMF 120
              F    FT  K +          ++     +++ +   ++ ++             ++ 
Sbjct: 314  ECFQALSFTRVKAVRGPVDESLKKEVSRLRYQAKKKLTDLQKKYFLRTPHDLVSDLTQVL 373

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR------DVSAWIRYKID 174
                  + +    +  ++ AK++  ++DF DL      LL          V + +  ++ 
Sbjct: 374  PLMATLVDVVLAFDRAFQAAKREKRLVDFNDLEHFCLRLLLDESASPGVPVPSSLALELK 433

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +    +L DE QDT+ +Q  ++  L+ +              F VGD KQSIY F  AEP
Sbjct: 434  EHFAEVLTDEYQDTNTVQETILTLLSRN------------NRFMVGDVKQSIYRFRLAEP 481

Query: 235  KRVLREKRINQKRAT------------------NAGQKFSIIELPLSFRSTADILTVVDK 276
               L + R      T                   A    + I+L  +FRS  ++L+ V+ 
Sbjct: 482  NLFLEKYRSFSPYDTPGPVNSDHGAPDHAFSGQGASVPGARIDLAKNFRSRRNVLSAVND 541

Query: 277  VFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGT-----VQLWEQVVSQHDSQCNPQQE-- 327
            +F       A  ++ D    + + ++     G      ++LW               E  
Sbjct: 542  LFRRIMTPRAGEMAYDRQAELVYGAAFPELPGRSGDPVIELWLLQRQPDADGSEESIETQ 601

Query: 328  -------------------------------SWTSYFDSLPQES--------------SA 342
                                           +  S  D   +++              +A
Sbjct: 602  QNANETKGAIDGDHKNIAKAGESPAQNTADVAGESPSDDAGEDAGQPTGGEEELLLLETA 661

Query: 343  SILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
               AR  A  I  ++ +     +   G  R +  +DI++L+R  K       +       
Sbjct: 662  QYEARLAARRIEELMKSAMPVYDREQGGYRPVCYRDIVILMRSTKGRA---DIFLEEFRA 718

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              I    +      +   +  L++L R I +   D+    +L+SP+F F+ +D+ +I   
Sbjct: 719  AAIPAYADTGAGYFEATEVSILLSLLRVIDNPCQDIPLAAVLRSPIFRFTGEDLARIRLA 778

Query: 460  RHETETVYEYIQKFANCGIS-------------KFQHVIKYIHELIHIAQFCSPHDFFTL 506
                               +             + +  ++ I     +A+  S       
Sbjct: 779  EPRKTFFDAIEAFIGQAEAAARDTFTPIDPVAIRLREFLRQIDAWRTLARRDSLAKLIAT 838

Query: 507  ILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPT 560
            I               G +    L    +   + E  +   L   +  +E+         
Sbjct: 839  IYRETGFYDYAGAMPGGGQRQANLRALYDRARQYEATTLRGLFRFLRFIERLQDQGGDLG 898

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
              R      + VRIM++H +KGLE PVVF+   GSQ       + + I  +L   P +  
Sbjct: 899  TARTLGEKEDVVRIMSIHKSKGLEFPVVFVAGLGSQFNLQDLRRDLLIHKNLGLGPVVVD 958

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
               + +        + + L + T  E  R+LYV +TRA ++LI+        +       
Sbjct: 959  TQLRYRYPTVAKLAIQRRLHRETLAEEMRILYVALTRAKEKLILLGTVREVAKSAQQWLH 1018

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
              + +  +      +    L  +    +WI      H          E    L     
Sbjct: 1019 DAEGIPVA----AALPDEVLLRAKCYLDWIGPALVGHPDGQEIRRWAEGAPALGATLP 1072



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 86/311 (27%), Gaps = 31/311 (9%)

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD---MVYDSFHNDERVKKIKLTNS 703
              RL Y           +      +  +      W +    +      D     +  +  
Sbjct: 1095 RWRLFYAAKK------ELIGLRKETGSETPFNPVWLEKLRRLEPIIPTDLVDASLSWSYP 1148

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
                  IA + +    +   +          +     +   S       E    +P  + 
Sbjct: 1149 YTGLSGIAAKVAVSRIKKQFVWHSPETPPSSETPPSLEIPPSLETPPSLETQTPSPDAL- 1207

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKE 820
               +              RG  +H  LQ +     + +                L   ++
Sbjct: 1208 VDLRPRFLQQDRRLTATERGSAVHLFLQHLDLAGEISQAGIAGQADRLVKLE--LLSLEQ 1265

Query: 821  YKNL-LLSITRLLENPMMTTA-MSCDSYSEVSVSGKINC---------PKKDIIISGRID 869
             + L    I R LE+P+      +     EV  +  +             + +II G ID
Sbjct: 1266 RQALNEEEILRFLESPLGHRLRKAKQVMREVPFTLALPAAEIYPEKRAEGESVIIQGVID 1325

Query: 870  QISISQQNIFIFEYKTHHHV-----PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
             +        + +YKT          + ++ +  +++ Q+++Y + ++     K     L
Sbjct: 1326 CLFEEDDGWLLLDYKTDRCPVGMDRERWLQQLRDSYLGQVNLYHRAVESVLKVKVKGRCL 1385

Query: 925  IYVSEPKVFII 935
              +S  +   +
Sbjct: 1386 FLLSIGREMAL 1396


>gi|312884293|ref|ZP_07744002.1| exodeoxyribonuclease V beta chain [Vibrio caribbenthicus ATCC
            BAA-2122]
 gi|309368066|gb|EFP95609.1| exodeoxyribonuclease V beta chain [Vibrio caribbenthicus ATCC
            BAA-2122]
          Length = 1204

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 141/979 (14%), Positives = 301/979 (30%), Gaps = 150/979 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKK-AQTLQQASQTQCIEERFSLLSSFFLT 75
             K  W L       +     ++  + +   L    + +   + ++     +      F  
Sbjct: 235  LKAAWRLAEADFLKLISESDVNKRSYSKKSLPIWLEGITAWATSETGNYDYPEKLEKFSQ 294

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    + +  T  ++     + + L                  +           +Y   
Sbjct: 295  KTLNEKTSKGTAPVHPVFNQIDDFL---------------ANPIGFKAPIIAHAIQYCRT 339

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
               E K +   L F+DL+ N +  L   +    +  KI +     +IDE QDT  +Q+ +
Sbjct: 340  RLAELKLQRQWLSFDDLLSNLSIALDNDESQQLV-KKIRELYPVAMIDEFQDTDPLQYSI 398

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
               +                LF +GD KQ+IY+F GA+    ++ +       T      
Sbjct: 399  FSRIY--------HQQDTLGLFMIGDPKQAIYAFRGADIFTYIKARHQVNSHFT------ 444

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
                L  ++RS+A+++  V+++FS   +     +D    I     +         W    
Sbjct: 445  ----LGTNWRSSAEMVQAVNQIFSGSSSPFIYDQD----IPFLPVQPRPGADTSFWMI-- 494

Query: 316  SQHDSQCNPQQESWTSYFDS--LPQESSASILARRIAYTISNMI-----GTDTIFSNGKK 368
               D +  P    W +  +   + +      +A   A  I  ++           +  +K
Sbjct: 495  ---DGEKQPALTFWLNGDNETPISKGEYIESMAIASANHIQTILMGSQRAQAHFHNGDQK 551

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            + I+A DI VLVR   +   I      L      SV  ++R  +      KD+  L + +
Sbjct: 552  KAIKASDIAVLVRTGSEAQKIKA---ALSERGIASVYLSNRESVFSSQVAKDIQRLLQGV 608

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L+ +++ +    L S LF  S  ++  +           E I          ++ V    
Sbjct: 609  LTSDNERALRACLASELFALSASELDSLNND--------ESIWDGIIHEFKGYRQVWSRR 660

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              L  +    S       +L  + G +             + E L    ++ ++ Y  L+
Sbjct: 661  GVLPMLRNIISKRHIAERLLEEQNGERVLTDLM------HIGELLQQASQDLESDYGLLR 714

Query: 549  ELISELEQYP------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
             L   ++             +   +  N V+I+T+H +KGLE  +VFL       F+H+ 
Sbjct: 715  WLSQAIDDAQNGHGGGDDQIQRLESERNLVQIVTIHKSKGLEYELVFLPFV----FAHRA 770

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
              +       +D         +     +     ++   K    E  RLLYV +TR+    
Sbjct: 771  AVEAKYYSPEHD---------RHILDISAHDASLQQADKERLAEDLRLLYVALTRSVYGT 821

Query: 663  II-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
             +        +  K         +     + +      L  ++ + E      S    ++
Sbjct: 822  FVGAAPLKNGHSNKEPTGIHLGAMGYLLQDGKEGSVADLVEALRRHEQSFIALSDLPLDH 881

Query: 722  T------PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                     E +      +  +       S     + +        + T    +++S   
Sbjct: 882  ETPYIANDQEIQNLSSGSLSHEIDRHWRISSYSGLVKQGGHTFDDNLGTLQYLDVDSFGD 941

Query: 776  D---------------NQTFNRGLIIHKLLQVIFTLPEHKRKN----FITSYCTKNAKLW 816
            +                +    G  +H L + I      K +      I    ++  ++ 
Sbjct: 942  EMQPENIELERSIFSFPKGARPGTFLHTLFEEIEFTLPAKSEQNTNIIINLLESEQMEVE 1001

Query: 817  PAKEYKNLLLSITRL-LE--NPMMTTAMSCDSYSEVSV---------------------- 851
                 +NL+ ++    L+  N  +          E+                        
Sbjct: 1002 WLPILQNLVDTVLSTPLDGKNLRLNQIPVPQRLVEMEFLLPIKVLTAPSLNRIVHRHDML 1061

Query: 852  ---SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYT 899
               +G++       ++ G ID +   Q   ++ ++K+++                   + 
Sbjct: 1062 SAKAGELGFQNAKGMLKGFIDLVFEYQGKYYVLDWKSNYLGDHVDHYQTSSIHSAMADHR 1121

Query: 900  HIAQLSIYEKILKDSYPNK 918
            +  Q  IY   L      +
Sbjct: 1122 YDFQYQIYALALHRFLATR 1140


>gi|256751129|ref|ZP_05492011.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750035|gb|EEU63057.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 653

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/644 (16%), Positives = 225/644 (34%), Gaps = 89/644 (13%)

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              R +  +DI+VL+R    T     +         I    +      D   IK +++L 
Sbjct: 8   KSYRAVDYRDIVVLLRA---TDRWAPVFLEELTQAGIPAFADTGTGYFDTTEIKTIISLL 64

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI---SKFQ 482
           + I +   D+  + +L+SP+F+F+E+++  +  +  E  T+YE I+K +        K +
Sbjct: 65  QVIDNPMQDIPLLAVLRSPIFSFTEEELIDLRLEDMEK-TIYEAIKKASQREDELGEKAK 123

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQ 541
           + +  + +    A +    +F   +           +   G +    L        + E+
Sbjct: 124 NFLDTLKKWQEKAVYMPVDEFLWYLYKDTGYYSYVAAMPQGVQRQANLRILFERAKQYEE 183

Query: 542 NSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            S+  L   I+ +             +    N N VRIM++H +KGLE PVV +   G Q
Sbjct: 184 TSFKGLFNFINFINRLKVSSGDMGSAKIVGENENVVRIMSIHKSKGLEFPVVIVAGLGKQ 243

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
             +    +K+     L   P    +  +    + +   +   +K     E  R+LYV +T
Sbjct: 244 FNTKDLYQKILYHHFLGLGPEFVDFRRRISYPSIVKEAIKYKIKLEGLSEEMRVLYVALT 303

Query: 657 RASDQLIICKHSNTSNEKKSNQ------------------RTWYDMVYDSFHNDERVKKI 698
           RA ++LI+   +    +                       +++ D +  +    + ++ +
Sbjct: 304 RAKEKLILVGSARDIKKNVRKWANAAILQEKVSEYDILNGKSYMDWIGAAVIRHKDLEPL 363

Query: 699 KLTNSI---NKDEWIAYEWSTHHPENTPLERE-------------------------ETI 730
           +    +    +++   +E    + ++  LE+E                         E  
Sbjct: 364 REFAGVSLSEEEDASKWEVKLWNKKDVLLEKEKNDKVDVVERLRSLDLDAHYSEFYKEVE 423

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYIL-----------NPSTIDTKGKTNLESLLSDNQT 779
           ++L       K  + P K  + E   +           +    +                
Sbjct: 424 RRLNYVYPYEKACYLPAKLSVTEVKRILNAEVVDEDTTSIFEREVLKTPIFLEKKKGLTA 483

Query: 780 FNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENP 835
             +G+ +H ++Q +     L     K  I     +   +   ++ K + +  I    +  
Sbjct: 484 AEKGIAMHLVMQKLDLDKDLSLEGIKEQIKDMVDRE--ILTEEQAKEVNIHKIEGFFKTS 541

Query: 836 MMTTAM-SCDSYSEVSVSGKI-----------NCPKKDIIISGRIDQISISQQNIFIFEY 883
           +    + S +   EV    K+               + I + G ID     +  + + +Y
Sbjct: 542 LGERMLSSKNVKREVPFHIKLSSREIYKDLPEEYENEFIQVQGIIDCFFEEEDGLVLIDY 601

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           KT +    ++E I   +  Q+ +Y K L++    K +    IY+
Sbjct: 602 KTDYVQEGKVEEIKERYKVQIELYSKALENI-TGKKVKEKYIYL 644


>gi|167855646|ref|ZP_02478404.1| ATP-dependent DNA helicase [Haemophilus parasuis 29755]
 gi|167853218|gb|EDS24474.1| ATP-dependent DNA helicase [Haemophilus parasuis 29755]
          Length = 673

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/670 (16%), Positives = 223/670 (33%), Gaps = 128/670 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +    +     F       L +   P+     +++ K    L   +   +++ +      
Sbjct: 97  KLLGYKSGMTLFDEHDQLALLKHLLPENVTEDKDLLKL---LVATISNWKNDLLSPEQTI 153

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              K  +       +  +    Y+   K    LDF+DLI+    L K+   +     +  
Sbjct: 154 ALAKSDRD-----RVFSHFYDQYQNQLKAYNALDFDDLIMLPTLLFKQFPEAK---ERWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q+I ++L+DE QDT+  Q+E+I+ L                   VGD+ QSIYS+ GA+P
Sbjct: 206 QKIRYLLVDEYQDTNTSQYELIKLLVGCD----------GNFTVVGDDDQSIYSWRGAKP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + + R ++   K          +I+L  ++RS+  IL   + +    ++       S   
Sbjct: 256 ENMGRLQQDFPK--------LKVIKLEQNYRSSQRILHCANILIDNNDHLFDKRLFSQLG 307

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              + +                                   + +  +    A RI     
Sbjct: 308 EGEKLN-----------------------------------VIEAKNEEQEAERIV---- 328

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                  + ++   R  + KD  +L R    + L+      L    +I    +       
Sbjct: 329 -----GELIAHRFSRKTKYKDYAILYRGNHQSRLLEK----LLIQNRIPYKISGGTSFFA 379

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY---- 469
              IKD++A  R +++Q+DD +F+ ++ +P        + K+      +  +++E     
Sbjct: 380 KAEIKDMLAYLRLLVNQDDDAAFLRIVNTPKREIGAATLEKLGQLANEKQVSLFEAIFDF 439

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
             IQ+         Q   +++ EL   A    P      +L   +            +  
Sbjct: 440 ELIQRLTPKPYQALQDFARWVVELSDQAVRSEPKSAIQDMLAKIQYEAYLYETAATPKSA 499

Query: 523 NEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 +     +  +     E +   SL ++++ L       +       ++V++MT+H
Sbjct: 500 EMQSRNVQTLFEWVEKMLEGDELSEPMSLNQVVTNLTLRDMMERGEDDDESDQVQLMTLH 559

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFL+     +  H+                                     
Sbjct: 560 ASKGLEFPHVFLIGMEEGILPHQTSID--------------------------------- 586

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +   EE  RL YVG+TRA   L            +  +      + +   +D + ++ 
Sbjct: 587 --EDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEVIKPEISRFLLELPQDDLQWERD 644

Query: 699 KLTNSINKDE 708
           K   S  + +
Sbjct: 645 KPKLSEQERQ 654


>gi|71278734|ref|YP_267066.1| ATP-dependent DNA helicase Rep [Colwellia psychrerythraea 34H]
 gi|71144474|gb|AAZ24947.1| ATP-dependent DNA helicase Rep [Colwellia psychrerythraea 34H]
          Length = 677

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 101/618 (16%), Positives = 213/618 (34%), Gaps = 122/618 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           K+ L K Q +    ++          +   A  +        Y +  K    LDF+DLI+
Sbjct: 129 KDLLSKLQSKISNWKNDLFLPDDALKSASDADSSEYAEFYQRYHKHMKAYNALDFDDLIL 188

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               L+K       +R +   +I ++L+DE QDT+  Q+E+++++T +            
Sbjct: 189 IPTLLMKNYPE---VRERWQNKIRYLLVDEYQDTNASQYELVKNITGE----------RG 235

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            L  VGD+ QSIYS+ GA+P+ ++   +              +I+L  ++RS+  IL   
Sbjct: 236 RLTVVGDDDQSIYSWRGAKPENLILLGKDFPA--------LKLIKLEQNYRSSGRILKCA 287

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + + +   +           +  ++        V+L        +++             
Sbjct: 288 NVLIANNPH-----------VYDKALFSELAYGVELRVIQAKNEENE------------- 323

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                         I   I  +IG             Q KD  VL R    + L+     
Sbjct: 324 --------------IERVIGELIGH------RFMNRSQYKDYAVLYRGNHQSRLLEKAL- 362

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 +I    +          IKD+MA  R +++ +DD +F+ ++  P        + 
Sbjct: 363 ---MQNRIPYKISGGTSFFSRPEIKDVMAYLRVLVNPDDDNAFLRIVNVPKRELGPATLE 419

Query: 455 KI-CTQRHETETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           K+         +++    +           + K Q   +++ ++   A+          +
Sbjct: 420 KLGTYANMRQISMFAASFELGLEQTLTGRSLMKMQAFTQWVVDIADQAERGDTAAVLRSM 479

Query: 508 LGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYP 558
           +               ++     +  + E  ++  +     +     +L ++++ L    
Sbjct: 480 IRQINYEDFLYDTSMSAKAAEMRMKNVTELFSWVTQMLEGSDDEEPMTLPQIVTRLTLRD 539

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              +     ++++V++MT+H +KGLE P VFL+     +  H+       +         
Sbjct: 540 MMERNEEEDSNDQVQLMTLHASKGLEFPYVFLIGMEEGLLPHQTSIDEGSV--------- 590

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                     EE  RL YVG+TRA  +LI           + ++
Sbjct: 591 --------------------------EEERRLAYVGITRAQRELIFTYARERRQFGELSR 624

Query: 679 RTWYDMVYDSFHNDERVK 696
                 +++   +D   +
Sbjct: 625 TEASRFLHELPQDDLNWE 642


>gi|150397238|ref|YP_001327705.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
 gi|150028753|gb|ABR60870.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
          Length = 850

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/652 (15%), Positives = 195/652 (29%), Gaps = 139/652 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y+         DF DL+++   + +       +  +   +  +IL+DE QDT+ 
Sbjct: 211 RELYAAYQNRLLTLNACDFGDLLLHPIRMFRANPD---VLKEYHGKFRYILVDEYQDTNT 267

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPR-------------------------------TLFAV 219
            Q+  +R L +     + + S+                                  +  V
Sbjct: 268 AQYMWLRLLAQRPRPSERSASAGPGDARQGQVAAAPDRAPPRSGDSVSASKQQQINICCV 327

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIY + GAE   +LR ++              +I+L  ++RST  IL     + +
Sbjct: 328 GDDDQSIYGWRGAEVDNILRFEKDFP--------GAKVIKLERNYRSTEHILGAAAHLIA 379

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             E   G +  +  T                              ++    + +DS  + 
Sbjct: 380 HNEGRLGKTLFTERT--------------------------NPEDEKVHVHAAWDSEEE- 412

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 AR +   I  +   +           +  DI +LVR              L   
Sbjct: 413 ------ARAVGEEIEQLQRKNH----------KLNDIAILVRASFQMREFEDRFVTL--- 453

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-T 458
             ++          + + I+D MA  R +    DDL+F  ++ +P     +  +  +   
Sbjct: 454 -GLNYRVIGGPRFYERMEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGDTTVRTLHDY 512

Query: 459 QRHETETVYEYIQKFANCGISKFQ------HVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
            R     +     +       K +       V+        + +     +    IL    
Sbjct: 513 ARARDIPMLAAASEIIETDELKAKARKSLFDVVADFRRWQTLLETTPHTELAEQILEESG 572

Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
               + +    E    ++ L E +      E         +   LE     +    + N 
Sbjct: 573 YTAMWQADKSAEAPGRLENLKELIRSMEAFES--------MRGFLEHVALVMDAEQNENM 624

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + V IMT+H+AKGLE   VFL      +F H+                            
Sbjct: 625 DAVSIMTLHSAKGLEFSTVFLPGWEEGLFPHQR--------------------------- 657

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                 +    +S  EE  RL YVG+TRA  +  I   SN               + +  
Sbjct: 658 -----ALDEGGRSGLEEERRLAYVGITRAKHRCHIWFVSNRRIHGLWQSTLPSRFLDELP 712

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
                V + + +       +    +    P     +     +      +  +
Sbjct: 713 IAHVEVAEQEASYGGYSRGYGQSRFDKADPFENSYQTPGWKRAQQHRSEATR 764


>gi|330719679|gb|EGG98228.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
           IMCC2047]
          Length = 518

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/539 (18%), Positives = 186/539 (34%), Gaps = 111/539 (20%)

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                Q   HIL+DE QDT+ IQ+  ++ L            +   +  VGD+ QSIY +
Sbjct: 2   LEHYQQRFRHILVDEFQDTNTIQYAWLQVLAG----------TEGRMTVVGDDDQSIYGW 51

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +                  ++L  ++RST+ IL   ++V S  +   G   
Sbjct: 52  RGAKIENIQKFTTDF--------NDVKTVKLEQNYRSTSTILNAANQVISKNQGRLGK-- 101

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW             +Q +  + F+ + +       AR +
Sbjct: 102 -------------------ELW-------TDGNEGEQIALYAGFNEVDE-------ARFV 128

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
             TI                     D  +L R    + ++            +       
Sbjct: 129 VSTIEEAFKHGNA----------YSDCAILYRSNAQSRVLEENL----IRSGVPYRVYGG 174

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               D + I++ +A  R +++++DD +   ++  P        +  I  T R +  +++E
Sbjct: 175 QRFYDRMEIRNALAYLRLVMNRDDDAAVERVINVPTRGIGAKAVETIRVTARDQGCSLWE 234

Query: 469 YIQKF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR---QQFISR 520
            I K      +  G S  Q  +  +++L    +    H+    ++ A       ++    
Sbjct: 235 AIIKLIGGGVSARGASALQGFVDLVNQLDEHTKGLPLHEQTDHVIQASGLLKFHKEEKGE 294

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHT 579
            G   ++ L+E ++ T   +Q+    L  L S L        ++    + + V++MT+H+
Sbjct: 295 KGQTRVENLEELVSATRAFDQDDDDELTPLQSFLSNAALDAGEQQADEHEDSVQMMTLHS 354

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VFLV     +F HK                                      
Sbjct: 355 AKGLEFPLVFLVGVEEGLFPHKMS----------------------------------IE 380

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             S  EE  RL YVG+TRA  +L I    +               + +      +  ++
Sbjct: 381 DPSGLEEERRLCYVGITRAMQKLYITYAESRRLYGSETLNRPSRFIREIPQELLKEIRL 439


>gi|116618575|ref|YP_818946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271225|sp|Q03W49|ADDA_LEUMM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|116097422|gb|ABJ62573.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1230

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 118/643 (18%), Positives = 217/643 (33%), Gaps = 67/643 (10%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD-----------------EFI 108
           +  L    L        +  T+ I K+ PDL   L+ ++                   + 
Sbjct: 273 WDELREAILDTPSGKINS-QTKAI-KEDPDLSATLEVARQIKGQVVGVKSQMNSLITSYF 330

Query: 109 KIRD---RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
            + +   +    + +K     + + +     +   K++  +LDF DL      +L     
Sbjct: 331 ALDEKSWQLVQKESYKLIDTLILVTQAFRESFRRTKREEKLLDFPDLGTLALAILSDDVT 390

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              I      + + IL+DE QD + +Q  ++ S+           S+   ++ VGD KQS
Sbjct: 391 KQTI----QGQFDEILVDEYQDINQLQETLLTSV-----------SNGHNMYMVGDVKQS 435

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284
           IY F  AEP     + +   K+          I+L  +FRS  ++  + + +F+   +  
Sbjct: 436 IYGFRQAEPSLFTNKYKQFAKK----ESDDIRIDLADNFRSQNNVTNITNLIFTQIMDET 491

Query: 285 -QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
              ++      +  +++    V  V   + +V   +       E +              
Sbjct: 492 LGDIAYAGEAKLVPKAAYPDDVPAVFHMDIIVEDAEEDLETDTEVF----------EKRQ 541

Query: 344 ILARRIAYTISNMIGT---DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                +A  I  +  T   D        R ++  DI +L R +     +    R      
Sbjct: 542 AQYALLAERILKLRETSIFDRKADPAGLRPVEYSDIAILTRAKSGYIDLVSTLRA----A 597

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I V           + +  ++ + R I +   D+    +L+SP+FNF E+++  I    
Sbjct: 598 GIPVQVEGVGNYFQTMEVYLMLDILRVIDNPHQDIPLAAVLRSPVFNFDENELAAIRIAD 657

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-S 519
              +               K Q+ +  I +   IA           I             
Sbjct: 658 KMHDYWTALQAYA--QQDQKAQNFLNLIEKWHAIATQNDLVALIWAIYDDTAWLDYVAGM 715

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ----YPPTIKRAHSANHNEVRIM 575
             G +    L     +    + N++S L   I  +EQ         + A   +   VRIM
Sbjct: 716 PGGAQRQANLHALYEYARTYQNNTHSGLFRFIRYIEQLQSGDSDLGEAAQETDAQAVRIM 775

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE P+VFL +      +      + I  +                       +
Sbjct: 776 TIHASKGLEFPIVFLPEFDKSFNTQDLKGGLLIQKNEGIGVEYIQPDALVMIPTLQKLVV 835

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
            + LK+ +  E  RLLYV +TRA  QL I        E  +  
Sbjct: 836 QQALKRQSWSEEMRLLYVALTRAEQQLYIVGSVKVKGEAGNQS 878


>gi|114322010|ref|YP_743693.1| ATP-dependent DNA helicase UvrD [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228404|gb|ABI58203.1| ATP-dependent DNA helicase UvrD [Alkalilimnicola ehrlichii MLHE-1]
          Length = 725

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/622 (16%), Positives = 197/622 (31%), Gaps = 118/622 (18%)

Query: 111 RDRFNTYKMFKSTLASLTLAKY-LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            +      +          A + +   YE+  +++ ++DF +L++ + +LL+       +
Sbjct: 155 EEGLRPADIQADAGEPFRFAVWQVYQTYEQTCRRSGLVDFAELLLRSFELLRD---RPDL 211

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    H+L+DE QDT+ +Q+  ++ L  +             +F VGD+ QSIY +
Sbjct: 212 LAHYRARFRHLLVDEFQDTNQLQYRWLQQLAGEDS----------DVFVVGDDDQSIYGW 261

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + + R  R           + SI  L  ++RST  IL   + + S      G + 
Sbjct: 262 RGARVENIHRYAREF--------GEVSITRLEQNYRSTETILNAANALISHNGGRMGKNL 313

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                                                    + F+   +       AR +
Sbjct: 314 W----------------------------TEGSRGDPIQLYAAFNETDE-------ARYV 338

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I+ ++                 D  +L R    +               +       
Sbjct: 339 VDRIAALLDEGYARD----------DFAILYRSNAQSRAFEESLLA----RGLPYRVYGG 384

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               D   I+D +A  R ++++ DD +F  ++ +P        + +I    R    +++E
Sbjct: 385 QRFFDRAEIRDALAYLRLLMNRHDDAAFERVINTPRRGIGNRTLDQIREGARAADASLWE 444

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +       +    +  Q  ++ +  L         H+    ++ A   R+   +   
Sbjct: 445 SAVRIIRAGGISARAGNAVQGFLQLLDRLEEETATLPLHEQMDRVIVASGLRRDAEADGS 504

Query: 520 RFGNEVIDVLDEFLNFTLRNEQ--NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
             G    + LDE +      EQ       L  L + L        +         V++MT
Sbjct: 505 DRGEARRENLDELVTAARNFEQQYERDEGLTPLTAFLTHAALEAGEAQGEEGQPCVQLMT 564

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE PVVFLV     +F H+   +                               
Sbjct: 565 LHSAKGLEFPVVFLVGLEEGLFPHRMSTEEPG---------------------------- 596

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                   EE  RL YVG+TRA ++L +            N       + +   +     
Sbjct: 597 ------RMEEERRLAYVGITRARERLYLAYAEKRRLHGMDNYGMPSRFIQEIPADYIEEV 650

Query: 697 KIKLTNSINKDEWIAYEWSTHH 718
           + ++  +       A +     
Sbjct: 651 RARMKVTRPGATAAAMQSEPVD 672


>gi|15618681|ref|NP_224967.1| DNA helicase [Chlamydophila pneumoniae CWL029]
 gi|15836305|ref|NP_300829.1| DNA helicase [Chlamydophila pneumoniae J138]
 gi|16752269|ref|NP_445637.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39]
 gi|4377080|gb|AAD18910.1| DNA Helicase [Chlamydophila pneumoniae CWL029]
 gi|7190013|gb|AAF38869.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39]
 gi|8979145|dbj|BAA98980.1| DNA helicase [Chlamydophila pneumoniae J138]
          Length = 639

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/548 (17%), Positives = 174/548 (31%), Gaps = 116/548 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +   LDF+DL+  T  LL++   +  +  ++      +LIDE QDT+  Q
Sbjct: 167 IYQEYQKKLIEANALDFDDLLFLTVRLLRESPEAQELYNQL---WKALLIDEYQDTNHAQ 223

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +++ L++            R +FAVGD  QSIYS+ GA    +L  +           
Sbjct: 224 YTLMQLLSKQ----------HRNVFAVGDPDQSIYSWRGANIHNILNFENDYPN------ 267

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RS  +IL   + +     +       S                     
Sbjct: 268 --AKVLCLEENYRSYGNILNAANALIKNNASRLEKELRSVK------------------- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +   +    D           A  +A  I  +              I+
Sbjct: 307 --------GPGEKIRLFLGSTDREE--------ADFVAAEILQLHRVG---------NIK 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +  R    +              +I               I+D++A  R  +S+ 
Sbjct: 342 LRDICIFYRTNSQSRTFEDAL----LRRRIPYEIIGGLSFYKRKEIQDILAFLRIFISKS 397

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ--------KFANCGISKFQH 483
           D ++F   +  P        IF +      +   + +  Q        K +       Q 
Sbjct: 398 DIVAFDRTVNLPKRGIGSTTIFALTQYAIAQGLPILKACQQALDTKDVKLSKKQQEGLQE 457

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQ 541
            +    ++ H     S  DF   ++      +          +    L+E  +  L +EQ
Sbjct: 458 YLALFPQIEHAYNTLSLRDFIESVVRITGYLEILKEDADTFKDRKSNLEELYHKALESEQ 517

Query: 542 NSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +  + L+  + +L           +   + V +MT+H  KGLE  V FLV    Q+  H
Sbjct: 518 QNPKTHLELFLDDLALKGSDD--DLNLTADRVNLMTLHNGKGLEFRVSFLVGLEEQLLPH 575

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            +                                          EE  RL YVG+TRA D
Sbjct: 576 ANSLGGTY---------------------------------ENIEEERRLCYVGITRAQD 602

Query: 661 QLIICKHS 668
            L +    
Sbjct: 603 LLYLTAAQ 610


>gi|261493211|ref|ZP_05989738.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
 gi|261311061|gb|EEY12237.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype
           A2 str. BOVINE]
          Length = 672

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 107/644 (16%), Positives = 224/644 (34%), Gaps = 125/644 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K+++ + + +    LK  +    +    +          +       +  +    Y+   
Sbjct: 118 KHLLPENVTEDKDLLKALIATISNWKNDLLSPERVLTRVRDERE--RVFSHFYQLYQNQL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    LDF+DLI+    L ++   +     +  Q+I ++L+DE QDT+  Q+E+I+ +  
Sbjct: 176 KAYNALDFDDLIMLPVLLFRQFPEAK---SRWQQKIRYLLVDEYQDTNTSQYELIKLIVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA+P+ + R +               +I+L 
Sbjct: 233 N----------EPNFTVVGDDDQSIYSWRGAKPENMQRLREDF---------DLQVIKLE 273

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + +    ++       S      +                       
Sbjct: 274 QNYRSSQRILHCANILIDNNDHLFSKRLFSELGQGEKL---------------------- 311

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                         + +  +    A RI            + ++   +  + KD  +L R
Sbjct: 312 -------------QVIEAKNEEHEAERIV---------GELIAHRFSKKTKYKDYAILYR 349

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+      L    +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 350 GNHQSRLLEK----LLMQNRIPYKISGGTSFFARAEIKDMMAYLRLVVNQDDDAAFLRIV 405

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHI 494
            +P        + K+      +  +++E       IQ+         Q   ++I E+   
Sbjct: 406 NTPKREIGAATLEKLGILANEKQVSLFEAIFDFELIQRLTPKPYQALQDFARWIVEIADQ 465

Query: 495 AQFCSPHDFFTLILGAKKGRQQF--------ISRFGNEVIDVLDEFLNFTLRNEQNSYS- 545
           A    P +    +L   +             ++   +  +  L E++   L  ++     
Sbjct: 466 ADRSDPIEAVKDLLAKIQYEAYLYEMAANPKVAEMQSRNVQTLFEWVQAMLEGDEIEPPM 525

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +       ++V++MT+H +KGLE P VFL+     +  H+    
Sbjct: 526 NLVQVVNRLTLRDMLERGEEDDEADQVQLMTLHASKGLEFPHVFLIGMEEGILPHQTSLD 585

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA   L   
Sbjct: 586 -----------------------------------EDNVEEERRLAYVGITRAQQTLTFS 610

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +CK     +E    + + + +       +   +K ++T    + 
Sbjct: 611 LCKERRQYDEIIKPEPSRFLLELPQDDLEWESEKPRMTEQEKEA 654


>gi|217968706|ref|YP_002353940.1| UvrD/REP helicase [Thauera sp. MZ1T]
 gi|217506033|gb|ACK53044.1| UvrD/REP helicase [Thauera sp. MZ1T]
          Length = 663

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 193/561 (34%), Gaps = 117/561 (20%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             ++A  L   YE   +    +DF+DLI     L  +      +R +   ++ ++L+DE 
Sbjct: 159 IASVAARLYKEYERTLRAYQAVDFDDLIALPVRLFDEHPE---VRERWQNKLRYLLVDEY 215

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+ +++ L+                 AVGD+ Q+IY++ GA+ + +   ++   
Sbjct: 216 QDTNRAQYRLLKLLSGVRGA----------FTAVGDDDQAIYAWRGADVENLKLLQQDYP 265

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           K          +I+L  ++RS+  IL   + V +  E        S              
Sbjct: 266 K--------LKVIKLEQNYRSSRRILEAANTVIANNEKLFDKRLWSEH------------ 305

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                              +Q   T+  D       A   A  +A  I          ++
Sbjct: 306 ----------------GQGEQIVVTNCRD-------AEHEAEWVATKI---------TAH 333

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             +   + KD  +L R      LI    R    +++I  V +      D   I+DL+A  
Sbjct: 334 KFEHRTRFKDYAILYRGNHQARLIEQQLR----NHRIPYVMSGGQSFFDKAEIRDLIAWL 389

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY-------IQKFANCGI 478
           R +++++DDL+F+  + +P        I  +        +            Q      +
Sbjct: 390 RLLVNEDDDLAFIRAITTPRRGIGAATIEALGAYAGHRHSSLFAAVFEEGLTQHLNAKQL 449

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLDEFLN 534
              Q    YI+ L + A           +LGA +              +     + +F+ 
Sbjct: 450 QGVQEFAAYINRLQYRAPREPAAQLLEDLLGAIRYEAWLFEHCDTREAESKWSNVRDFVG 509

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
           +  R  +    +L EL   +       K     + + V++ T+H +KGLE P VFLV   
Sbjct: 510 WLGRKGEEDGKNLLELTQTIALMSMLDKEDP--DFDGVQMATLHASKGLEFPHVFLVGVE 567

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +  H+                                       +   EE  RL+YVG
Sbjct: 568 EGLLPHQSSID-----------------------------------EDKVEEERRLMYVG 592

Query: 655 MTRASDQLIICKHSNTSNEKK 675
           +TRA   L +       + K+
Sbjct: 593 ITRAQRSLNLTWCERRKSGKE 613


>gi|104779936|ref|YP_606434.1| exonuclease V subunit beta [Pseudomonas entomophila L48]
 gi|95108923|emb|CAK13619.1| exonuclease V, beta subunit [Pseudomonas entomophila L48]
          Length = 1223

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 140/1030 (13%), Positives = 305/1030 (29%), Gaps = 147/1030 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             K  W +   ++  I +    + +     +       +           ++         
Sbjct: 232  LKAPWGVWADELQQICRDAVAAKQADGRKLQA-----RYFEPWFDKLRAWAGDEQAMELD 286

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              T    + T  + +     +     +      +R++                A +++A 
Sbjct: 287  LGTGFTRLTTAGMAEAWKSGEPPDHPALRAMENLREQLQGL-ASPDVRLLEHAAAWVSAR 345

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            +E  K++   + F+D+++     L   +    +   I ++    LIDE QDT  +Q+ + 
Sbjct: 346  FEVEKRRRAEMGFDDMLLRLQHAL-GSEAGERLAGLIREQFPVALIDEFQDTDPVQYGIF 404

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
              +        + ++    LF +GD KQ+IY+F GA+    L  +R           +  
Sbjct: 405  ERIYR-----ISENNPDTGLFMIGDPKQAIYAFRGADIYTYLAARRA---------TRGR 450

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            +  L  +FRS+  ++  V++VF   E       +       R+     +  V++  +  +
Sbjct: 451  LHSLDTNFRSSQAMVAAVNRVFLQAEARS----EGRGAFLFRAHGDNPLPFVEVHAKGRA 506

Query: 317  QH---DSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIGTDT------IFSNG 366
            +H   D Q       W    D  +        LA   A  I  ++             +G
Sbjct: 507  EHLLVDGQPVEALHCWQLESDEPVSNTLYRQRLAASCASHIVALLNGGQQGVSGFADKDG 566

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            K R  Q  DI +LVR  ++  L+             SV  +D+  +       DL+A  +
Sbjct: 567  KLRPCQPSDIAILVRDGREAQLVRAELAARDVR---SVYLSDKDSVFAAQEAHDLLAWLK 623

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                 + +      L S   +    D+ ++           E + +       +++   +
Sbjct: 624  ACAEPDSERLLKAALASLTLDLPLIDLERLNQD--------ERVWENWVMRFRRYRDTWQ 675

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNS 543
                L  + +          ++    G +   +         L E L      L  EQ  
Sbjct: 676  RQGVLPMLRRLLHDFQLPRSLMARSDGERVLTNLL------HLAELLQQAAGELDGEQAL 729

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               L E ++   Q          ++   V+++T+H +KGLE P+V+L    +        
Sbjct: 730  IRHLAEHLANAGQVGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFICTSKPVDGQR 789

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
              +                          +D ++        E  RLLYV +TRA     
Sbjct: 790  LPLAWHDDDGVAHLTLTPD----------ADQVERADDERLAEDLRLLYVALTRAQHACW 839

Query: 664  ICKHSNTSNEKKSNQRTWYDM---------------VYDSFHNDERVKKIKLTNSINKDE 708
            +         ++S+Q     +               + +             +  + + +
Sbjct: 840  LGVADLKRGTQRSSQLHRSALGYLLGGGSALKTSSELGEWLRVLAAANPAIASGPVPEAD 899

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----SPIKNDINEPYILNPSTIDT 764
               Y       E  P  +                L     + + +      +L+   +D+
Sbjct: 900  AQCYRMPESQRELLPPRKPRRAAAEHWWIASYSALRVGDQTLVADSSQAQQLLDDEVLDS 959

Query: 765  KGKTNLESLLSDNQTFNR----GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
                 + +   D   F R    G  +H LL+        +            A+    ++
Sbjct: 960  LQLREVPAEAGDIHRFPRGPNPGTFLHGLLEWAGNEGFAEVAAQPDRLEDTVARRCNRRD 1019

Query: 821  YKNLLLSITRLLE------------NPMMTTAMSCDSYSEVSVSGK--INCPKKDIIIS- 865
            +K  + ++T+ L+            +  +          E   +           +++  
Sbjct: 1020 WKGWIPTLTQWLQQMLVQPMPLVDTSLTLAELGQYQIEMEFWFASHNVDAMQLDQLVVRH 1079

Query: 866  --------------------GRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHI 896
                                G ID         ++ +YK++   P          E   +
Sbjct: 1080 THGGVARPGAQPTQLNGMFKGFIDLAFELDGRYYVADYKSNWLGPDAQAYGPLAMEQAIL 1139

Query: 897  PYTHIAQLSIYEKILKDSYP--------NKSLVCLL-IYVSE------PKVFIIPQNKLN 941
             + +  Q  +Y   L             ++ +   L I++              P   L 
Sbjct: 1140 EHRYDLQYVLYLLALHRQLRARLPDYDYDRHIGGALFIFLRGVTPAGHGLYHARPPRALI 1199

Query: 942  KAFAEISTKI 951
            +A   +   +
Sbjct: 1200 EALDALFRGV 1209


>gi|86749146|ref|YP_485642.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
 gi|86572174|gb|ABD06731.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           HaA2]
          Length = 845

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 106/587 (18%), Positives = 182/587 (31%), Gaps = 148/587 (25%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+E  K     DF DL++    L ++      +  +       IL+DE QDT++ Q
Sbjct: 204 LYAAYQERLKVLNAADFGDLLLENIRLFREHPD---VLRQYQSRFKFILVDEYQDTNVAQ 260

Query: 193 WEVIRSLTE------------------------------------DFFVGKNTH--SSPR 214
           +  +R L++                                    D   G      S P+
Sbjct: 261 YLWLRLLSQAPSSSSSSLPGLTRQSIISQEDGSPGRDASRRPGDDDRTSGDVAAPSSPPK 320

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIY + GAE   +LR                 +I L  ++RST  IL   
Sbjct: 321 NICCVGDDDQSIYGWRGAEVDNILRFDHDFP--------GAKVIRLERNYRSTGHILAAA 372

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             + +  E   G +                                  + +  + T  +D
Sbjct: 373 SHLIAHNEGRLGKTL----------------------------RTEDVDGEMVTVTGAWD 404

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           S  +       AR I   I  +               +  +I +LVR             
Sbjct: 405 SEEE-------ARGIGEEIEQLQRQGH----------KLNEIAILVRASFQMREFEDRFV 447

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            L     +           +   I+D +A  R I S  DDL+F  ++  P     +  + 
Sbjct: 448 TL----GLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNVPKRGLGDATVQ 503

Query: 455 KIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            +    R     ++E  +      +      S  + +I+            S  +   ++
Sbjct: 504 LLHDHARKRRIPLFEASRLVVETDELKPKARSSLRGLIENFERWQVQRNALSHTELAEIV 563

Query: 508 LGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           L      + +      +     + L E +      E         L   LE     + R 
Sbjct: 564 LDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFEN--------LQGFLEHISLVMDRD 615

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            +A+ + V +MT+H+AKGLE   VFL      +F H+                       
Sbjct: 616 GAADEDAVSVMTLHSAKGLEFETVFLPGWEEGLFPHQR---------------------- 653

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                      +    ++  EE  RL +VG+TRA  +  +   +N  
Sbjct: 654 ----------ALDDQGRAGLEEERRLAHVGITRARRRAKLYFATNRR 690


>gi|217033890|ref|ZP_03439314.1| hypothetical protein HP9810_870g22 [Helicobacter pylori 98-10]
 gi|216943653|gb|EEC23098.1| hypothetical protein HP9810_870g22 [Helicobacter pylori 98-10]
          Length = 681

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/572 (16%), Positives = 182/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+ +IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSTEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A       ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVGFYERAEVKDALAFMHLAAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIK 486
                 +L  P     +     I +    E   + E ++      K            I 
Sbjct: 388 RFFIRRVLNKPSRGLGKITQEWIFSLLDDENLNLEEALKLGVFKGKLNPKNEYALNKFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S  +F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVEEFCARFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVQERSYFGRKISCSPSVFLEEAKLLKQDNPP 619


>gi|208435346|ref|YP_002267012.1| DNA helicase II [Helicobacter pylori G27]
 gi|208433275|gb|ACI28146.1| DNA helicase II [Helicobacter pylori G27]
          Length = 682

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 94/572 (16%), Positives = 181/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    +  +  +  ++I++DE QDT+ +Q 
Sbjct: 159 YELYQNALKKDNLVDFDDLLCLSLKILQDNE---KLAKETSERYHYIMVDEYQDTNALQL 215

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 216 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 257

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+ +IL   + + S  ++    +         +S +      V     
Sbjct: 258 GAKVVKLETNYRSSTEILACANSLISHNQHRHIKT--------LQSFKGSHKSVVCKEYL 309

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 310 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 334

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 335 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 388

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K            I 
Sbjct: 389 RFFIKRVLNKPPRGLGKITQEWIFSLLDDEDLNLEEALKLGAFKDKLNPKNEYALNKFIA 448

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F    L      + +       E    + E L+    + + + +
Sbjct: 449 MIGRLRE-AFEISVEKFCARFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 507

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +    +    + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 508 --HSLLDFLNESVLDVHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 558

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 559 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 588

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 589 YVKERSYFGRKISCSPSVFLEEAKLLQQDNPP 620


>gi|126695666|ref|YP_001090552.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9301]
 gi|126542709|gb|ABO16951.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9301]
          Length = 802

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 100/569 (17%), Positives = 190/569 (33%), Gaps = 96/569 (16%)

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSL-TEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
           +R    +   HIL+DE QDT+  Q+E+I+ +   +    K  +   R++F VGD  QSIY
Sbjct: 245 VRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWEDRSIFVVGDADQSIY 304

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF  A+ + ++  +   +    +     S+I+L  ++RS+++IL   + +          
Sbjct: 305 SFRAADFRILIGFQEDFKTSIND-DTNSSLIKLEENYRSSSNILDAANSLIENNSERIDK 363

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              +T                                +  +  S  D + +       A 
Sbjct: 364 VLKATK----------------------------EKGELLTLLSCDDEISE-------AE 388

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I ++        N   +    K+  +L R R  + ++          ++I     
Sbjct: 389 AITNKIKSL--------NNYNQNPIWKNFAILYRTRAQSRVLEESL----VRWRIPYTIF 436

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                 D   IKD +A  + +++  D++S + ++  P     +  I K+          +
Sbjct: 437 GGLRFYDRREIKDAIAYLKVLVNSSDNVSLLRIINVPRRGIGKTTIQKLNELSNRLNIPL 496

Query: 467 YEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E +    +                + +++L+   +   P     LIL         +S 
Sbjct: 497 WEVLNDKQSLEETIGRSSKGINKFTEVMNDLLCYLENSGPAQLLQLILEKSGYLSDLLSS 556

Query: 521 FGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMT 576
              E  D    L E +N   + E+ + S   ++   L     T        N N V +MT
Sbjct: 557 GTEESEDRRNNLQELINAATQYEEETESG--DVEGFLSTAALTTDNDTKKNNPNSVTLMT 614

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE   VF+      +F          +                           
Sbjct: 615 LHNSKGLEFQNVFITGLEQGLFPSHRSIDTPSL--------------------------- 647

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                   EE  RL YVG+TRA +++ +             + T   +       D    
Sbjct: 648 -------LEEERRLCYVGITRAKERVFLSHARERRLWGGMREATIPSIFLSEIPEDLIDG 700

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725
           ++  T   +    +  +  T    N P E
Sbjct: 701 ELPQTGGASIRRDLHLDRLTRVDRNNPNE 729


>gi|33242131|ref|NP_877072.1| hypothetical protein CpB0800 [Chlamydophila pneumoniae TW-183]
 gi|33236641|gb|AAP98729.1| UvrD [Chlamydophila pneumoniae TW-183]
          Length = 639

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/548 (17%), Positives = 174/548 (31%), Gaps = 116/548 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +   LDF+DL+  T  LL++   +  +  ++      +LIDE QDT+  Q
Sbjct: 167 IYQEYQKKLIEANALDFDDLLFLTVRLLRESPEAQELYNQL---WKALLIDEYQDTNHAQ 223

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +++ L++            R +FAVGD  QSIYS+ GA    +L  +           
Sbjct: 224 YTLMQLLSKQ----------HRNVFAVGDPDQSIYSWRGANIHNILNFENDYPN------ 267

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RS  +IL   + +     +       S                     
Sbjct: 268 --AKVLCLEENYRSYGNILNAANALIKNNASRLEKELRSVK------------------- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +   +    D           A  +A  I  +              I+
Sbjct: 307 --------GPGEKIRLFLGSTDREE--------ADFVAAEILQLHRVG---------NIK 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +  R    +              +I               I+D++A  R  +S+ 
Sbjct: 342 LRDICIFYRTNSQSRTFEDAL----LRRRIPYEIIGGLSFYKRKEIQDILAFLRIFISKS 397

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ--------KFANCGISKFQH 483
           D ++F   +  P        IF +      +   + +  Q        K +       Q 
Sbjct: 398 DIVAFDRTVNLPKRGIGSTTIFALTQYAIAQGLPILKACQQALDTKDVKLSKKQQEGLQE 457

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQ 541
            +    ++ H     S  DF   ++      +          +    L+E  +  L +EQ
Sbjct: 458 YLALFPQIEHAYNTLSLRDFIESVVRITGYLEILKEDADTFKDRKSNLEELYHKALESEQ 517

Query: 542 NSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +  + L+  + +L           +   + V +MT+H  KGLE  V FLV    Q+  H
Sbjct: 518 QNPKTHLELFLDDLALKGSDD--DLNLTADRVNLMTLHNGKGLEFRVSFLVGLEEQLLPH 575

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            +                                          EE  RL YVG+TRA D
Sbjct: 576 ANSLGGTY---------------------------------ENIEEERRLCYVGITRAQD 602

Query: 661 QLIICKHS 668
            L +    
Sbjct: 603 LLYLTTAQ 610


>gi|109948205|ref|YP_665433.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715426|emb|CAK00434.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 681

 Score =  266 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/572 (17%), Positives = 187/572 (32%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    +  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YDLYQNALKKDNLVDFDDLLFLSLKILQDNE---KLAKETSEHYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +  ++       
Sbjct: 215 EFLKILS----------FTHNNLCVVGDDDQSIYGFRGADISNILNFSKHFKR------- 257

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  +N    +  S    R                 
Sbjct: 258 -AKVVKLETNYRSSAEILKCANALISHNQNRHKKTLQSFKGSRK--------------SV 302

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           +  ++ +Q     +                     +AY I  ++       N        
Sbjct: 303 ICKEYLTQKEESLD---------------------VAYQIKALLNKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   IKD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRNIEESLNAL----NIPYRLIGAVSFYERAEIKDALAFMHAVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K         +    
Sbjct: 388 RFFIKRILNKPPRGLGKITQELIFSLLDEKDLNLEEALKLGAFKDKLNPKNEYALKKFTA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEFSVEKFCERFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +    +    + N ++V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDVHN--TENAHKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA ++L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEELQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   K         + ++    +    
Sbjct: 588 YVKERSYFGKKITCLPSSFLEEAQLLQQNKPP 619


>gi|315187021|gb|EFU20778.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 665

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/597 (17%), Positives = 189/597 (31%), Gaps = 118/597 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y    +    +DF+DLI+    L +       +     +   +ILIDE QD
Sbjct: 159 EVYRAVYEEYHAHLRAYHAVDFDDLIVLPIRLFETHPE---VIASYRERFRYILIDEFQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS++Q+  I+ L E+           R L  VGD+ QSIYS+ GA  +     +R   +R
Sbjct: 216 TSILQYHFIKLLAEE----------HRNLCVVGDDDQSIYSWRGANYENFALFERDFPER 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     ++L  ++RS   IL   +++ S   N +                 G+ G 
Sbjct: 266 --------KEVKLEQNYRSVQTILEAANQLISHNTNRKEKRL-----------WSGRPGK 306

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             ++    S    +                           IA TI  ++  +       
Sbjct: 307 TAIYLTFPSDEREES------------------------EYIAETIRTVVLKER------ 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   +I VLVR       I          + I    +      +   IKD++A  R 
Sbjct: 337 ---IPYHEIGVLVRTNSLMTPIEDAF----LRHNIPYKLSGGTSFFERKEIKDIIAYLRV 389

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480
           IL+ +DD+S + ++ +P        +  +         ++Y  +                
Sbjct: 390 ILNPDDDVSLLRIINTPRRGIGRQTLHMLGEYATEHELSIYSALTSLLYAQGLPPQVART 449

Query: 481 FQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE------VIDVLDEFL 533
           F   +  I E    I++  S  +    ++      +  +    +           L  F 
Sbjct: 450 FDEFVSLIEEFGERISRRTSIAETVRDLVDRIDYFEYLMQEHRDNEKVARYRYQNLMLFA 509

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLV 591
           +   R E +  +    L + L +     K          +V +MT+H AKGLE   VFL 
Sbjct: 510 DLIERWENDPDNLNPNLGAYLTRISLITKDELDEEDTKGKVNLMTIHAAKGLEFAHVFLA 569

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  H    +        +                                  RL 
Sbjct: 570 GVEDGIIPHARALEESEANMEEE---------------------------------RRLF 596

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           YV +TRA + L +         ++  ++T    + +   +    K      +    E
Sbjct: 597 YVAITRAREALYLTSCRQRRVMREDQEQTPSPFLEELPDHLIETKAPPSDLTEEDVE 653


>gi|329118947|ref|ZP_08247642.1| ATP-dependent helicase PcrA [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464975|gb|EGF11265.1| ATP-dependent helicase PcrA [Neisseria bacilliformis ATCC BAA-1200]
          Length = 671

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 105/609 (17%), Positives = 192/609 (31%), Gaps = 116/609 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           +E++  +Q +    ++   T +    T A           A Y+E       +DF+DLI 
Sbjct: 126 REQIFAAQHQISLWKNELRTPENVFQTAADEWEKHTARAYAAYQETLHHYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL+     + +R +    + ++LIDE QDT+  Q+ ++R +            +  
Sbjct: 186 LPALLLQNN---SQVRERWQHRLRYLLIDECQDTNACQYTLMRLIAG----------AEG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA+ + + R +    +          I++L  ++RSTA IL   
Sbjct: 233 MFTAVGDDDQSIYAWRGADMENLRRLQTDYPQ--------IKIVKLEQNYRSTARILKAA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           ++V          +                     LW                       
Sbjct: 285 NQVIKNNPKLFPKT---------------------LWSHYGEGD--------------II 309

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           ++    +    A  +A  I+             +  +   D  +L R    +       R
Sbjct: 310 TVAACQNEQHEAEWVAGEIAR-------RKTISEGRLNYADFAILYRGNHQSRPFEEALR 362

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 +I    +      +   IKD++A  R I + +DD +F+    +P     +  + 
Sbjct: 363 A----ARIPYRLSGGQSFFEKAEIKDILAYLRLIANPDDDPAFLRAATTPKRGIGDTTLG 418

Query: 455 KIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           ++    +    ++                           I +    A           +
Sbjct: 419 RLNDYAKTHHASLTAAAHAPESLAALPERSRHSLTAFTALIEDCRTRAPAEDAGALIRSL 478

Query: 508 LGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           L         I     R G      + +  N+  R  +    +L E    L        R
Sbjct: 479 LDTIGYEAHLIESEEGRAGEIKWRNVQDLCNWIGRKSREDGKNLIETAQTLALMTMLENR 538

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + V++ T+H AKGLE PVV+LV     +F H                       
Sbjct: 539 E-DEETDAVKMSTLHAAKGLEYPVVYLVGCEEGIFPH----------------------- 574

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                          L++   EE  RL+YVG+TRA   L +   +    +          
Sbjct: 575 ------------ADSLEEGKIEEERRLMYVGITRAKRTLTLTHCTKRKRQGAWQFPEPSR 622

Query: 684 MVYDSFHND 692
            + +    D
Sbjct: 623 FIAEMPQED 631


>gi|318606956|emb|CBY28454.1| exodeoxyribonuclease V beta chain; RecB [Yersinia enterocolitica
            subsp. palearctica Y11]
          Length = 1148

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 128/988 (12%), Positives = 292/988 (29%), Gaps = 154/988 (15%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSL--SMETGNPTILKK--AQTLQQASQTQCIEER 65
            +E+    ++ +        +          ++ +G+    +   A+ L    +       
Sbjct: 155  DETILSRHQQIVVQIEAVKAQWRAAAPELEALISGSGVDKRSYSARYLPNWLEKVGSWAE 214

Query: 66   FSLLSSFFLTQKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
                      +    +++++   T++      D+   + +  ++ + +RD          
Sbjct: 215  QETGDYQLPKELEKFRQSVLFEKTKKGEAPQHDVFHTIDRIFEQPLTLRDLI-------- 266

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                      +    ++ K++   L F+DL+   +  L++      +   I       +I
Sbjct: 267  ---LARAISEIRISVQQEKRQRAELGFDDLLSKLDAALQQ-AGGELLAQSIRTRYPVAMI 322

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT   Q+ +  +L                L  +GD KQ+IY+F GA+    +R + 
Sbjct: 323  DEFQDTDPQQYRIFHTLYGG--------QEECGLLLIGDPKQAIYAFRGADIFTYIRARS 374

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                  T          L  ++RS+  ++  V+++FS+ +      +     +       
Sbjct: 375  EVSAHYT----------LDTNWRSSFPMVQSVNRLFSLVDVPFLFKQIPFINVAPAQKNK 424

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-- 360
                       +  +   +  P    W    D +       ++AR+ A  I + +     
Sbjct: 425  Q----------LSFEIKGKKQPAMSFWLQSGDGVGVSEYQQLMARQCAAQIRDWLTAGQK 474

Query: 361  ---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                + +    R +QA DI +LVR R +  L+      L      SV  ++R  + D   
Sbjct: 475  GLAQLVTATSSRPVQASDITILVRSRAEAALVRDALSTL---AIPSVYLSNRDSVFDTAE 531

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
             KDL+ L + +L+ E + +    + + +       + ++       + + +    +    
Sbjct: 532  AKDLLWLLQAVLAPEQERALRSAMATGILGLDARMLDELNHDERAWDALVDEFDGYRQHW 591

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT- 536
                + V+  + E++              +L  + G ++            L E L    
Sbjct: 592  QR--RGVLPMLREIMAQRH------LAENLLATQGGERRLTDLL------HLGELLQEAA 637

Query: 537  --LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              L +E      L + I++        +    ++ + V+++T+H +KGLE P+V+L    
Sbjct: 638  SQLDSEHALIRWLAQQIAQPNHQSDNQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVS 697

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            +       +                          N   +     ++    E  RLLYV 
Sbjct: 698  NFRQQQDVLYHDRHSFEAL-------------LDLNADEESQALAEEERLAEDLRLLYVA 744

Query: 655  MTRASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            +TRA          +I        E   +      +V      D +    KL       +
Sbjct: 745  LTRAVYHCSIGIAPLIKGGRKKQGESDMHLSALGYLVQQGQAGDAQYLADKLAGLAALAD 804

Query: 709  W-----IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK--------------- 748
                   A +      +    E      +    Q       +                  
Sbjct: 805  GEISVSQAGQLDETPWQPQQDELPALAARQFSRQIHDFWRVTSYSGLQQHGSSKSVASQA 864

Query: 749  ---NDINEPYILNPSTIDTKG--KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                       L+   +  +        +  +  +    G  +H LL+ +      ++  
Sbjct: 865  LSVPLQELLPRLDTDAVGEQTLMTEPQLTPHTFPRGAAPGTFLHDLLEPLDFSQPIEQDW 924

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENP---MMTTAMSCDSYSEVSVSGKINCPKK 860
                   +      +      L  I +   N     +         +E+     I+   +
Sbjct: 925  LTEQLQQQGFGGQWSSMLYQWLTDIVQTPLNETGVTLAQLTPQSKQAELQFYLPIDTLLQ 984

Query: 861  DI--------------------------IISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
                                        ++ G ID +   Q   ++ +YK++        
Sbjct: 985  ARELDTLIKRYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSA 1044

Query: 895  HIPY---------THIAQLSIYEKILKD 913
            +             +  Q  +Y   L  
Sbjct: 1045 YTHDAMAQAMAEHRYDLQYQLYTLALHR 1072


>gi|312884785|ref|ZP_07744483.1| ATP-dependent DNA helicase Rep [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367552|gb|EFP95106.1| ATP-dependent DNA helicase Rep [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 672

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/660 (14%), Positives = 215/660 (32%), Gaps = 125/660 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  Q+ +     L++ +    +    +        M +       +     +
Sbjct: 112 DQMALLKELTEQQFDGDKDLLRQLMSTISNWKNDMLTPEQASVMAQGEQQ--QVFAQCFS 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI     LLK       +R +    I ++L+DE QDT+  Q+++
Sbjct: 170 LYQKQMKAYNALDFDDLISLPVQLLKSSPE---VRSRWQNRIRYLLVDEYQDTNTSQYDL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +  +             L  VGD+ QSIYS+ GA+P+ ++   +             
Sbjct: 227 VKLIVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGQDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +       S      +                 
Sbjct: 269 RLIKLEQNYRSTSRILRAANVLIANNPHVYEKKLFSEIPDGEKL---------------- 312

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                               L +  +    A R+         T  + ++        +D
Sbjct: 313 -------------------KLLKAKNEEHEAERV---------TGELIAHKFLNRTDYRD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           +I    +          IKD+MA  + +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----MQNRIPYKLSGGTSFFARAEIKDIMAYLKVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +    ++
Sbjct: 401 AFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFEASFELGLEQSLSGRGLEHLRRFTTWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLR----- 538
            ++   A+     +    ++                +     +  + +  ++ +      
Sbjct: 461 VKIADQAERGDTVEAVRALVRDIHYEDWLYETSTSPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 -NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +Q    +L+E++  L       +     + + V++MT+H +KGLE P V+L+     +
Sbjct: 521 NYDQEE-KNLKEVVQRLTLRDMMERGEEDDDSDAVQLMTLHASKGLEFPYVYLIGAEEGI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H+                                       +   EE  RL+YVG+TR
Sbjct: 580 LPHQTSID-----------------------------------EDNVEEERRLMYVGITR 604

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L            +  + T    + +   +D   +  K   S  +          +
Sbjct: 605 AQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVDWEHEKKPVSQEERMAKGQAHIAN 664


>gi|118580949|ref|YP_902199.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
 gi|118503659|gb|ABL00142.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
          Length = 672

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/601 (15%), Positives = 191/601 (31%), Gaps = 118/601 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               +   Y+E  K    +DF+D+I+ +  LL+       I     +  +HI++DE QDT
Sbjct: 164 ATASVYPRYQELLKGFNAIDFDDIIMLSVKLLQSTPA---ILEHWQKRFSHIMVDEYQDT 220

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ +I  L +              L  VGD+ QSIY + GAE + +L  +       
Sbjct: 221 NASQYLLISLLAKL----------HGNLCVVGDDDQSIYGWRGAEVRNILNFEHD----- 265

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +I+L  ++RST+ IL   + V    +     +                    
Sbjct: 266 ---HAGCRVIKLEQNYRSTSSILDAANSVIKNNQLRTDKA-------------------- 302

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW  +    +              D +   S     A+ +          +++     +
Sbjct: 303 -LWTALGKGRE-------------IDLIVAGSEEDEAAKVV----------ESMLMEQFR 338

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             +   D+ +L R    +       R  +    I  V        +   +KD +A  + I
Sbjct: 339 DKLSWSDLAILYRSNSQSRAFEEKLRQER----IPYVVIGGQQFYERKEVKDAIAYLKVI 394

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKF 481
            +  D+ S + ++  P     ++ + ++          +++       I   +       
Sbjct: 395 DNPSDEASLLRIINFPRRGIGDNTLVRLNQWSLEHDLPLFQTLARVRDIPDISESSKKAV 454

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-----GNEVIDVLDEFLNFT 536
           +     +  ++   +     +    +    +   +            + I+ +++ +N  
Sbjct: 455 EAFHAMMRGVMEGFKNIRMGEQVNALFNRLRIEDELYRTLNDASQARKRIENIEQVVNSL 514

Query: 537 LRNEQNSYSS-LQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDT 593
              E+ +    L   +  +              H  + V +M++H++KGLE   VFLV  
Sbjct: 515 AVYEEQNPKGTLSAFLERISLLDEDKPNEDDKEHGRDAVTLMSLHSSKGLEFSHVFLVGM 574

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +  HK                                      +  T  E  RL YV
Sbjct: 575 EEDLLPHK----------------------------------RSIEEDPTVAEERRLCYV 600

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           G+TRA   L I +           QR     + +   +    +  +        + +A +
Sbjct: 601 GITRARRHLTISRCRTRRKYGAVEQRNPSRFLDEIPEHLLNSEGGEQQEGAKDSDSMAAD 660

Query: 714 W 714
           +
Sbjct: 661 F 661


>gi|325576766|ref|ZP_08147381.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392]
 gi|325160972|gb|EGC73090.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392]
          Length = 670

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 111/638 (17%), Positives = 215/638 (33%), Gaps = 122/638 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +    + +    L+E +    +    +      Y + K   A          
Sbjct: 112 DQLALLKELTADVLQEDKDLLRELISVISNWKNDLVSPKQAYALAK--DAKYQTFAKCYE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y    +    LDF+DLI+    L K+    A +R K  ++I ++L+DE QDT+  Q+E+
Sbjct: 170 RYAAQIRAYNALDFDDLIMLPTLLFKQN---AEVRSKWQEKIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I+ L  +                VGD+ QSIYS+ GA P+ ++R +    +         
Sbjct: 227 IKLLVGE----------RACFTVVGDDDQSIYSWRGARPQNMVRLRDDFPR--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST  IL   + +    E+       S                        
Sbjct: 269 QVIKLEQNYRSTHRILHCANILIDNNEHVFDKKLFSNL---------------------- 306

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    + E          +  +  I+A  IA+                 R  + KD
Sbjct: 307 --------GEGEKLQVIEAKNEEHEAERIVAELIAHR--------------FSRKTKFKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L+  +        +I    +          IKD+MA  R +++Q+DD 
Sbjct: 345 YAILYRGNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLLVNQDDDA 400

Query: 436 SFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+    + +  +++E I +F              Q   ++I
Sbjct: 401 AFLRIVNTPKREIGTATLQKLGELAQEKHISLFEAIFEFELMQRVTPKAYDALQKFGRWI 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN---- 539
            EL   +    P      +L +    +       +          +    ++        
Sbjct: 461 VELNDQSLRSDPETAVRSLLSSLHYEEYLYEYATSPKAAEMQSKNVATLFSWVGDMLKGD 520

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + N   +L ++++ L       +       ++V++MT+H +KGLE P V+L+     +  
Sbjct: 521 DVNEPMTLNQVVTRLTLRDMMERGEDDDESDQVQLMTLHASKGLEFPHVYLIGMEEGILP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 581 HQTSID-----------------------------------EDNVEEERRLAYVGITRAQ 605

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             L            +  +      + +   +D + +K
Sbjct: 606 QTLTFSLCRERRQFGELIRPEPSRFLAELPQDDVQWEK 643


>gi|153835500|ref|ZP_01988167.1| ATP-dependent DNA helicase Rep [Vibrio harveyi HY01]
 gi|148867939|gb|EDL67147.1| ATP-dependent DNA helicase Rep [Vibrio harveyi HY01]
          Length = 671

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/660 (14%), Positives = 219/660 (33%), Gaps = 125/660 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L++ L    +    +        + +       L  +   
Sbjct: 112 DQLALLKELTEKQLDGDKDLLRQLLSCISNWKNDMLTSEQAKALAQGEQQ--QLFAFCFE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI     LL+  +    +R +    I ++L+DE QDT+  Q+++
Sbjct: 170 MYQKQMKAYNALDFDDLISLPVQLLRNNEE---VRQRWQNRIRYLLVDEYQDTNTSQYDL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 227 VKLIVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + ++       +           A R+         T  + ++      + KD
Sbjct: 308 -------DGEKLKVLLAKN-------EEHEAERV---------TGELIAHKFLNRTEYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----MQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +   +++
Sbjct: 401 AFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFEVSFEMGLEQHLTGRGLENLRRFTQWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLR----- 538
             +   A+     +    ++                +     +  + +  ++ +      
Sbjct: 461 VAIADQAERGDTVEAVRSLVRDIHYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 -NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +Q    +L+E++  L       +     + + V++MT+H +KGLE P V+L+ +   +
Sbjct: 521 NYDQEE-KTLKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H+                                       +   EE  RL+YVG+TR
Sbjct: 580 LPHQTSID-----------------------------------EDNVEEERRLMYVGITR 604

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L            +  + T    + +   +D   +  K   S  +          +
Sbjct: 605 AQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEANKKPVSAEERMAKGQAHIAN 664


>gi|117924280|ref|YP_864897.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp.
            MC-1]
 gi|117608036|gb|ABK43491.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp.
            MC-1]
          Length = 1155

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 138/970 (14%), Positives = 284/970 (29%), Gaps = 130/970 (13%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSM-ETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
             + + +        Q+  + +Y + ++ + GN ++                   +  L+ 
Sbjct: 228  LQGLAQRFDAHKRLQLVQLARYAAANLPDEGNASLRSWLDAQDFPGTAPHDLPLWRGLAE 287

Query: 72   FFLTQKFTPQKNIIT-------------------QEINKKSPDLKEKLKKSQDEFIKIRD 112
              +T     +K +                     Q+       L E LK+ Q    +   
Sbjct: 288  LLVTADGAWRKRVDKNLGFPPASAFNNKEEQQQAQQQKTAHATLLEDLKRFQLTLNEALQ 347

Query: 113  RFNTYKMFKSTLASLTLAKYL-------NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
               +        A   + + L        AH      K   +DF ++ +     L   D 
Sbjct: 348  GVKSMPTPGYGEAEWAVLEALGLVLKLAVAHLRWVFNKVSKVDFAEVSLQAVTALGTPDN 407

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +    D ++ H+L+DE QDTS +Q +++  LT  +          RTLF VGD  QS
Sbjct: 408  PTDLTLVWDYKLRHLLVDEFQDTSQLQIKLLEGLTAGWSAEDG-----RTLFLVGDPMQS 462

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F  AE     + +                ++L ++FRS A ++  V++ F      Q
Sbjct: 463  IYRFRKAEVALFAQVREQ-----GLGSISVEPLQLEVNFRSNAGVVGWVNEAFEQLFPEQ 517

Query: 286  GLSEDSTTTIRHR-SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
               +       H         G    W  V    D                      A  
Sbjct: 518  EDRDLGAVPYHHSVPFHGASHGVAVQWHPVQGGLDG---------------------ALR 556

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A+++   I      +               + VLVR R     +  L +       I  
Sbjct: 557  EAQQMVRIIEQTRQQNPQ-----------GSLAVLVRARPHLAALVPLLKA----AGIPF 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
               +   L     ++DL +L R +    D ++++ +L++P    S   +  +   +    
Sbjct: 602  QAVEIDALERRPVVQDLWSLSRALHQPADRIAWLALLRAPWCGLSPAQLVPLAEGQGSGT 661

Query: 465  TVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
             +++ +Q              +   +++ +   +          +      A  G     
Sbjct: 662  PLWQALQDKRRVEQLEPMAQGRLNRLVEVLQGALAQRGRVGLRQWIEGCWHALGGPATAG 721

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
               G +        L       +        L   L++          A    V++MT+H
Sbjct: 722  GAEGMQDASRYFALLEQLES--RGEVVDWPALGGRLQRL---YGAGAEAGPGVVQLMTIH 776

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-------IWIPQSKSRNNI 631
             +KGLE   V L          +         S   + G              +     +
Sbjct: 777  KSKGLEFDTVILPGLNRPGKVSERPLLEMWERSHIHEWGGVERQLLVAPIPSAADEEAPL 836

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
             + L +   +  + E  RLLYV  TRA   L +     +  +K         M++ +   
Sbjct: 837  FAFLRRVQGEQERHEMRRLLYVATTRAKQHLHLLALL-SEQDKDPKANLPLGMLWPTLST 895

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
             +  +           +     W           +       +                 
Sbjct: 896  MDPAEPGAPPPPPQAAQAPRPLWPQTLQRLADGWQPPPPPPAVA---------------- 939

Query: 752  NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---------FTLPEHKRK 802
                +L    +            +       G++ H+ LQ++             E  + 
Sbjct: 940  ----VLRDEGMAEPEGEPPRYDWAGEPARMAGIVTHEWLQIMAQQGVASWRPARVEALQG 995

Query: 803  NFITSYCTKN-AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
               +       AK    +  + ++ ++ + L   +    +      E +   ++      
Sbjct: 996  AIASRLVALGLAKNRIEETAQRVVQALKQALTTLLGRWILHDGHQ-EAACERELTGVLGG 1054

Query: 862  IIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPY----THIAQLSIYEKILKDSYP 916
             +    ID+  + ++ + +I +YKT  H  Q+++         +  QL  Y +IL     
Sbjct: 1055 RLTRIVIDRTFVDEEGVRWIIDYKTSAHSGQDVDGFLDNEVVRYRQQLENYARILGAL-E 1113

Query: 917  NKSLVCLLIY 926
             + +   L +
Sbjct: 1114 QRPIHLGLYF 1123


>gi|148980789|ref|ZP_01816220.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrionales bacterium
            SWAT-3]
 gi|145961078|gb|EDK26398.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrionales bacterium
            SWAT-3]
          Length = 1224

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 151/1008 (14%), Positives = 310/1008 (30%), Gaps = 158/1008 (15%)

Query: 12   SYELIYKDLWP-LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            S   +  D+   L    +      +S  ++T +   L K + L+ A   +   +  +L+S
Sbjct: 205  SPAALLADVNRYLTGSPLKLTVDAMSGDLQTLHNQNLDKVKQLK-ALWCESEADFLALIS 263

Query: 71   SFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKS---------------QDEF 107
               + ++   +K++ T         + +       +KL+K                Q   
Sbjct: 264  GSDVNKRSYTKKSLPTWLEAVTAWAQSDTHDYQYPDKLEKFSQATLIEKTPKGTAPQHAV 323

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +  + F                 +      +AK++   L F+DL+          D  +
Sbjct: 324  FEAIEDFLNNPADLKAPLLAHAITHCRTMLAKAKQQKQWLSFDDLLTQ-LSASIDVDEQS 382

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             +  +I       +IDE QDT  +Q+ +   +  D        +    LF +GD KQ+IY
Sbjct: 383  LLVERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLD--------NPQCGLFMIGDPKQAIY 434

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F GA+    ++ +       T          L  ++RS+AD+++ V++VF   ++    
Sbjct: 435  GFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVSAVNQVFMNSDSPFIY 484

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
             +D    I             + W        +     QE+       LP+      +A 
Sbjct: 485  DQD----IPFLPVAASPSADKRQWVMNGETQHALTFWLQEAEDKP---LPKGEYHKAMAE 537

Query: 348  RIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  I  ++           +  K+  + A DI VLVR   +  LI      L      
Sbjct: 538  ATASQIQTILTASQNQQAYFDNGKKQHAVNAGDIAVLVRTGSEGRLIKN---ALSEQGIA 594

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            SV  ++R  +   +  +D+  L + +L+ E+D +    L S LF      + ++      
Sbjct: 595  SVYLSNRDSVFTSMVAQDIQRLLQAVLTPENDRALRASLASELFALDAASLDELNNDEVV 654

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             E V    +++    +   + V+  +  +I              +L  + G +       
Sbjct: 655  WENVVNEFREYRKLWLQ--RGVLPMLRSVISKRH------LAERLLEEENGERSLTDLM- 705

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMT 576
                  + E L    +   + Y  L+ L   +              +   +  N V+I+T
Sbjct: 706  -----HIGELLQQARQELDSDYGLLRWLAEAISDAQNGLGGSEDDIQRLESERNLVQIVT 760

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE  +VFL    S                 ++          +          +
Sbjct: 761  IHKSKGLEYDLVFLPFVAS-------------YREASEGKFYDHDSDTTVLDITGSDSAL 807

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-----RTWYDMVYDSFHN 691
                K    E  RL+YV +TRA     I                        +V +    
Sbjct: 808  AQADKERLAEDLRLIYVALTRAVYGCFIGMAPLRKGRSTKEPTGVHLSAMGYLVQNGQEQ 867

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP----- 746
                    L     K+  +    +    E   ++ E+  + L   +       +      
Sbjct: 868  GIAELHQALAAIEGKNSSVLLAETPTAHEQVFVQTEQVSEDLHANELKASIDRAWRITSY 927

Query: 747  --------IKNDINEPYILNPSTIDTKGK-------TNLESLLSDNQTFNRGLIIHKLLQ 791
                         +    ++   ID+  +           S+ +  +    G  +H L +
Sbjct: 928  SGLVKQGSHGASHDATIEVSGFDIDSADEQDESELIEPERSIFTFPRGARPGTFLHTLFE 987

Query: 792  VIFTLPEHKRK---NFITSYCT-KNAKLWPAKEYKNLLLSITRLL---ENPMMTTAMSCD 844
             +        +     IT     +  +L      + L+ ++       ++  ++   S  
Sbjct: 988  EVEFTEPAISEHNTQVITHLLESEQYELEWLPVLQQLVDTVLNTALDGKSLKLSEKDSTQ 1047

Query: 845  SYSEVSVSGKINCPKK-------------------------DIIISGRIDQISISQQNIF 879
               E+     I                                ++ G ID +   Q   +
Sbjct: 1048 RLVEMEFLLPIEVLAASELNQTIQYHDPLSAKAGDLGFQTVQGMLKGFIDLVFEHQGKYY 1107

Query: 880  IFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKDSYPNK 918
            + ++K++H          E +      + +  Q  IY   L     ++
Sbjct: 1108 VLDWKSNHLGDDVAVYHGEALKSAMADHRYDLQYQIYALALHRFLRSR 1155


>gi|317182683|dbj|BAJ60467.1| DNA helicase II [Helicobacter pylori F57]
          Length = 681

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/572 (16%), Positives = 180/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A       ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLAAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K            I 
Sbjct: 388 RFFIRRVLNKPSRGLGKITQEWIFSLLDGENLNLEEALKLGVFKGKLNPKNEYALNKFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F    L      + +       E    + E L+    + + + +
Sbjct: 448 IIGRLRE-AFEISVERFCARFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVQERSYFGRKISCSPSVFLEEAKLLKQDNPP 619


>gi|261250075|ref|ZP_05942652.1| ATP-dependent DNA helicase Rep [Vibrio orientalis CIP 102891]
 gi|260939579|gb|EEX95564.1| ATP-dependent DNA helicase Rep [Vibrio orientalis CIP 102891]
          Length = 671

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 99/660 (15%), Positives = 222/660 (33%), Gaps = 125/660 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L++ L    +    +          K       L  +   
Sbjct: 112 DQMALLKELTEKQLDGDKDLLRQLLSTISNWKNDMLTPDQAKAQAKGEQQ--QLFAFCFE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI     LL+  +    +R +    I ++L+DE QDT+  Q+++
Sbjct: 170 MYQKQMKAYNALDFDDLISLPVLLLRTNEE---VRQRWQNRIRYLLVDEYQDTNTSQYDL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 227 VKLIVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYDKSLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + ++       +           A R+         T  + ++      + KD
Sbjct: 308 -------DGEKLKVLLAKN-------EEHEAERV---------TGELIAHKFLNRTEYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             VL R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAVLYRGNHQSRLIEKSL----MQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +       +  G+   +    ++
Sbjct: 401 AFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFEASFEMGLEQTLSGRGLENLRRFTAWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLR----- 538
            ++   A+     +    ++                +     +  + +  ++ +      
Sbjct: 461 VKIADQAERGDTVEAVRSLVRDINYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 -NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +Q    +++E++  L       +     + + V++MT+H +KGLE P V+L+ +   +
Sbjct: 521 NYDQEE-KTIKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHASKGLEFPYVYLIGSEEGI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H+                                       +   EE  RL+YVG+TR
Sbjct: 580 LPHQTSID-----------------------------------EDNVEEERRLMYVGITR 604

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L            +  + T    + +   +D   ++ K   S  +          +
Sbjct: 605 AQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEQTKKPVSAEERMEKGQAHIAN 664


>gi|218708138|ref|YP_002415759.1| ATP-dependent DNA helicase rep [Vibrio splendidus LGP32]
 gi|218321157|emb|CAV17107.1| ATP-dependent DNA helicase rep [Vibrio splendidus LGP32]
          Length = 672

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 109/680 (16%), Positives = 225/680 (33%), Gaps = 129/680 (18%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +A   +     F       L ++ T ++    +++ +    L   +   +++ +      
Sbjct: 97  KALGLKAGFSLFDDQDQLALLKELTERQIDGDKDLLRA---LMSTISNWKNDMLTPDQAK 153

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              +  +       L  +    Y++  K    LDF+DLI     LLK       +R +  
Sbjct: 154 ARAQGEQE-----QLFAFCFEMYQKQMKAYNALDFDDLIAMPVLLLKTN---QEVRERWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             I ++L+DE QDT+  Q+E++R L  +             L  VGD+ QSIYS+ GA+P
Sbjct: 206 SRIRYLLVDEYQDTNTSQYELVRLLVGE----------RGRLTVVGDDDQSIYSWRGAKP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + ++                  +I+L  ++RST+ IL   + + +   +    S  S   
Sbjct: 256 QNLVLLGEDYPN--------LRLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP 307

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              +                                     +    +    A RI   I 
Sbjct: 308 DGEKL-----------------------------------KVLNAKNEEHEAERITGEI- 331

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                    ++      + KD  VL R    + LI           ++    +       
Sbjct: 332 --------IAHKFLNRTEYKDYAVLYRGNHQSRLIEKAL----MQNRVPYKISGGTSFFA 379

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF 473
              IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++E   + 
Sbjct: 380 RAEIKDIMAYLRVLVNPDDDNAFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFEASFEM 439

Query: 474 ANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
                     +   +    +I  +   A+  +  +    ++                +  
Sbjct: 440 GLEQTLTGRGLENLRRFSDWIVRISDNAERGNTVEAVRSLVRDINYEDWLYETSASPKAA 499

Query: 523 NEVIDVLDEFLNFTL-----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
              +  + +  ++ +      N      +L+E++  L       +     + ++V++MT+
Sbjct: 500 EMRMKNVSDLYSWIVADLEGDNYDKEEKTLREVVQRLTLRDMMERGEDDDDADQVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE P VFL+     +  H+                                    
Sbjct: 560 HASKGLEFPYVFLMGAEEGILPHQTSVD-------------------------------- 587

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              +   EE  RL+YVG+TRA  +L   K        +  + T    + +  H D   + 
Sbjct: 588 ---EGNVEEERRLMYVGITRAQKELTFTKCRERRQYGELIKPTQSRFLDELPHEDVEWES 644

Query: 698 IKLTNSINKDEWIAYEWSTH 717
           +K   S  +          +
Sbjct: 645 VKKPQSAEERMEKGQAHIAN 664


>gi|118580565|ref|YP_901815.1| exodeoxyribonuclease V, beta subunit [Pelobacter propionicus DSM
            2379]
 gi|118503275|gb|ABK99757.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pelobacter
            propionicus DSM 2379]
          Length = 1203

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 129/998 (12%), Positives = 278/998 (27%), Gaps = 164/998 (16%)

Query: 11   ESYELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            E+   + K++W   + ++ ++      LS   G           +        +  F L 
Sbjct: 217  ETLFSLVKEIWLNSHTEIRELIRSDKGLSRAKGAYNPDTLPPLFEAMDAYARSDNPFDLF 276

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            S F           + T  I K        L     +  +   +    +        L  
Sbjct: 277  SDF---------SKLCTIGILKGKKPTGAPLSHPFFDLCEQLRQRVGQRFLALKAELLAF 327

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A     H    K +  +  F+DL+ +  + L       +    + Q+    LIDE QDT 
Sbjct: 328  AA---EHVAARKSERNIRFFDDLLTSLYEALGGPRGDDFALC-LRQKYRAALIDEFQDTD 383

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +Q+++ R +  D             LF +GD KQ+IYSF GA+    L        +A 
Sbjct: 384  PVQFDIFRKIYAD---------PAHPLFLIGDPKQAIYSFRGADIFAYL--------KAA 426

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               +      L  ++RS   +L   + +F          E +  ++       G      
Sbjct: 427  AGVEATRRFTLTSNWRSAPALLAAFNALFDNDFKPFLFGEIAYHSVASGLEEEGN----- 481

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQES----SASILARRIAYTISNMIGTDTIFSN 365
                         +   + W    D   + S    +   +   +A  I+ ++        
Sbjct: 482  -----RLTWAEADDAPLQLWCVPPDEEGKASNVGRANKSVPMAVAAEIARLLRAGMAGEA 536

Query: 366  GKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R +  + I V+VR  +    I    + L     I  V      +      + +  L
Sbjct: 537  LIDGRPVLPEHIAVIVRSHRQAGYIQEALKNL----SIPSVMRSDASIFTTREARQVCTL 592

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
               + +  ++      L + +F  + DDI  +  +    E      Q++    +   +  
Sbjct: 593  LAALAAPGNEWKLRAALVTDIFGLTGDDIATLLEEEPLWEEWLSKFQEYHQIWLE--RGF 650

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            +  +  L+              +L    G ++  +           E L+   +      
Sbjct: 651  MVMVQTLLSREGVRG------RLLRKPDGERRLTNLL------HCCEILHAASQERSLGP 698

Query: 545  SSLQ-ELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              L       +     +         +   V+I+T+H +KGLE P+VF     + V S +
Sbjct: 699  EGLAVWFGERISAGDASEGYQIRLETDEKAVKILTIHVSKGLEYPIVFCPFLWAGVRSDE 758

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             +   H    L  D G                      +K +  E  RLLYV +TRA  +
Sbjct: 759  EVVTFHDDFRLVKDYGSADQELHRVL-----------AQKESLAENLRLLYVALTRAKFR 807

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
              +       +  ++   T             R     +     + + ++ E        
Sbjct: 808  CYLVTGKIVDSTGRNRPETSPLAYLFHASATTRNADDTVGQLGQEVKKLSAEEMEQQLRA 867

Query: 722  TPLEREETIKQLMDEQKIPKKLFSP-------------------------------IKND 750
                +++ I      +    + + P                                   
Sbjct: 868  VAARQQDAISVSSMPEAGGAERYEPFHDGGERLSEKKFNAMIERDWRVSSFTSLASHDLS 927

Query: 751  INEPYILNPSTIDTKGKTNLESLLSD-------NQTFNRGLIIHKLLQVIFT--LPEHKR 801
              E    + +         L              +  + G+ +H++ + +        K 
Sbjct: 928  TTELPDRDEAGAKETALPPLPEADPREKSIFTFPKGAHAGIFLHEIFEKLDFSGSSGEKT 987

Query: 802  KNFITSYCTKN-AKLWPAKEYKNLLLSITRL-LENPM----MTTAMSCDSYSEVSV---- 851
             + + +   K+           +++ ++       P     ++        +E+      
Sbjct: 988  TDLVAACLKKHCFGAEWQSTISDMIENVVSTQFSAPEGPFSLSDLRQGKWLAELEFFFPL 1047

Query: 852  ---------------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
                                       +  +       ++ G +D +       ++ ++K
Sbjct: 1048 KFVTSNILKECLGSWSSGCTAVNLQALAQSLRFRPAKGMVRGFMDMVFEHGGRFYLVDWK 1107

Query: 885  THHH---------VPQEIEHIPYTHIAQLSIYEKILKD 913
            ++H                     +  Q  +Y   L  
Sbjct: 1108 SNHLGYRVEAYGEKALTSAMDQNLYSLQYLLYTVALNR 1145


>gi|229490998|ref|ZP_04384831.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
 gi|229322114|gb|EEN87902.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
          Length = 1130

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 139/1083 (12%), Positives = 263/1083 (24%), Gaps = 234/1083 (21%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
              +  + +      +LW + +  VS  +  +      G+ T    A   Q A      E+
Sbjct: 142  LPIEPSATLLS-ETELWQVAHRVVSGWDSDLDTDKNPGSITETVLALAGQLAEHLVDPEQ 200

Query: 65   RFSL---LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                   L     T    P+                             ++  N   +  
Sbjct: 201  LLEAHTELDKLIHTLPAGPK-----------------------QRGGPSKELLNYLDVQH 237

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              +  L L   L        ++   LDF   +  +  +  +      +     +    +L
Sbjct: 238  KRIELLPLVARLGE----TLRREGALDFGSQMSLSARVASEHPE---VGQTERERFRVVL 290

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   Q  ++ SL                L AVGD  QSIY + GA    + R  
Sbjct: 291  LDEYQDTGHAQRVLLSSLFG------GGADGRLALTAVGDPMQSIYGWRGASAANLPRFA 344

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                      G+    +EL  S+R+  + L + +   +                  R+  
Sbjct: 345  TDFP---LANGKPAPTLELLTSWRNPPEALELANLSSAPLRRRG------VAVSTLRARP 395

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V+L      + +                           + +A  I+       
Sbjct: 396  GAVAGDVRLALLGDLEQER--------------------------QWVAEKIAEEYEAAR 429

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                            VL+R+  D   +    R       + V       L     + D+
Sbjct: 430  AEDRPTPTA------AVLIRRNADAAPLAEALRS----KGLPVEVVGLGGLLHTPEVADV 479

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            +A+ R +       + V +L    +     D+  +  +  E      Y    A       
Sbjct: 480  IAMLRVVADPLAGSAAVRLLTGARWQIGAKDLAALSQRSRELAISAGYGTAGAVTDAEAL 539

Query: 482  QHVIK---------------------------------------YIHELIHIAQFCSPHD 502
               ++                                        +  L          +
Sbjct: 540  TSAVQDALPGENAEQAGLVDSISDPGPAERYSALGYTRINAIAAELASLRERIGQ-PLTE 598

Query: 503  FFTLILGAKKGRQQFISRF-----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                +        +  +R      G    + LD F +          ++L  +++     
Sbjct: 599  LVAEVERVLGIGIEAGARTRVGVVGTAGREHLDAFADVVANYATRPTANLPGMLAFFAAA 658

Query: 558  PPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI----- 608
                            + V+I+TVH+AKGLE  VV +      VF         +     
Sbjct: 659  EQIEKGLTPGEVEVAPDRVQILTVHSAKGLEWEVVAIPHVSDGVFPSSTASGSWLGALAE 718

Query: 609  MPSLNDDPGIPIWI-------------PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +P                            K   N ++   K L     +E  RL YV +
Sbjct: 719  LPPSLRGDRAVDADSADGVPVLDLEELYNRKDLENAITAHKKALSNRRLDEDRRLFYVAL 778

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF---HNDERVKKIKLTNSINKDEWIAY 712
            TR    L I  H    +  +    + +           ND   +  +    + ++   A 
Sbjct: 779  TRTERALFISAHHWAESGSEPKGPSEFLDELHQMVTAENDADEEDSRGAIGVVEEWAPAP 838

Query: 713  EWSTHHPENTPLEREETIKQL--------------------------------------- 733
            E  T +P        +                                            
Sbjct: 839  EPDTENPLAATPRTAQWPPDPLGARRGAVEAGAASVLSALASLPQDSQEAEEPEDDPENW 898

Query: 734  -----------MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
                               ++  P +  + +   L     +   +         N    R
Sbjct: 899  ASDVDVLLAEREARANARAEVILPAQLSVTQLVDLKADPDELAARLRRPLPYPPNPLARR 958

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            G   H  ++  F        + +       A          L+      L +P       
Sbjct: 959  GTAFHAWIERRFGATRLLDLDELPGAADTGAGPETD-----LVKLQDAFLRSPW------ 1007

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHI 901
              + S + V           ++ GRID +         + ++KT        E      +
Sbjct: 1008 -ANRSPIEVEVPFETSIAGTVLRGRIDAVFADPDGGWTVIDWKTGAEPSAANEDAV---V 1063

Query: 902  AQLSIYEKILKDS-------------YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
             QL+ Y     +              +P   +     YV   +          +A A + 
Sbjct: 1064 MQLAAYRVAWAELMSARARSAGRNEQFPADKVRAAFHYVRSGRTIAPENLPDGEALARLI 1123

Query: 949  TKI 951
               
Sbjct: 1124 RTA 1126


>gi|329770175|ref|ZP_08261566.1| hypothetical protein HMPREF0433_01330 [Gemella sanguinis M325]
 gi|328837076|gb|EGF86718.1| hypothetical protein HMPREF0433_01330 [Gemella sanguinis M325]
          Length = 1221

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 149/903 (16%), Positives = 306/903 (33%), Gaps = 131/903 (14%)

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL----KKRDVSAWIRY 171
                +  +    T+   ++  + + K+ N  LDF DL       L    +++        
Sbjct: 350  AKHTYDFSNNFRTVLISVHEQFIKKKRANNFLDFSDLNHLAIKALVHKKEEKLEPTEAAN 409

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                    I +DE QD + +Q  ++  +  D              F VGD KQ+IY F G
Sbjct: 410  YYRDYFLEIYVDEYQDNNNLQEYILNIIKGD----------NVNFFRVGDVKQAIYGFRG 459

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELP-----------LSFRSTADILTVVDKVFSI 280
            + P     +    +K             L             +FRS  +IL   + VF+ 
Sbjct: 460  SNPDLFEEKYNSYKKLFIENYDINKDYSLEYEGVGICILLKENFRSHENILKSSNYVFNR 519

Query: 281  --PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
               +   G+S D  + + + + +      +           ++    + S+ +  +   +
Sbjct: 520  LMADKNAGISYDEESALYYPTVKKKNNNVIP----------TRLINGKVSYFTGVEQDDK 569

Query: 339  ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            +         IA  I   I              +  D  VLVR          +     +
Sbjct: 570  KLYRVQSIENIASEILKGIEEGN----------KYSDYAVLVRNSTKMIEYKNIF----S 615

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
             Y I +   ++   T  +    L  L  F+ +   + S + +L S +F++S D++ ++  
Sbjct: 616  KYNIPLFFKEKVGFTTSICFNLLFNLFNFLDNTNREASLIALLHSEIFDYSNDELLEL-- 673

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
               + + ++E I+  A     K    +   ++ ++ +   S  D    I          +
Sbjct: 674  SLKDGKNLFEKIKNSATEKDKK---TLNIFNKWLNFSLNNSLIDLLEKISKDIDFINYLV 730

Query: 519  S-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIM 575
            +    +E +D  + F +  +  ++     L   ++ L+               +N V + 
Sbjct: 731  TISVSDEEVDYYENFRDLVIDYQKLDNK-LSSFVNHLKNIKDEEVFETKKKVPNNSVTLS 789

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN---DDPGIPIWIPQSKSRNNIV 632
            T+H +KGLE   VF+ D  +      +  ++          D   +      S   N+  
Sbjct: 790  TIHISKGLEYKYVFVSDLDTSFSKRGYSGEVLFTEEFGLSIDIDNLCKKYNISTIENSFF 849

Query: 633  SDLIKHL----KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            ++L K      +   +EE  R LYV +TRA   L +         K+             
Sbjct: 850  NNLYKLNSILIRIKEREEEVRNLYVALTRAEKVLYLVSPEGIELNKEEAMGNNVSKALFE 909

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK--QLMDEQKIPKKLFS- 745
              + E++  + L +    +     E      +  P    E ++     + +   K+ +S 
Sbjct: 910  EGDFEKILNVVLNDYSEDNYQYTSEHGASFEQYIPEVSGEIVESGDKNNYEDYLKEFYSE 969

Query: 746  ----------------------PIKNDINEPYILNPSTI---------DTKGKTNLESLL 774
                                  P K   +    +N                  +NL    
Sbjct: 970  FSNKALKEEQIIEGAKSKNKFFPAKTSYSALKKINKQDEFIKNKEDKKGYLELSNLAKST 1029

Query: 775  SDNQTFNRGLIIHKLLQVIFTL-----PEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-- 827
            S ++   RG ++HKL + I          +   N++ S   K++ L   KE + L     
Sbjct: 1030 STSKAILRGNVVHKLFERIINDIRKNKEINDIDNYLESLVKKDSILINIKEQRILTEEEY 1089

Query: 828  -----------ITRLLENPMMTTAM-SCDSYSEVSVS--------GKINCPKKDIIISGR 867
                       I   + N ++ T   + +  +EV+ +         K +  +K++I+ G 
Sbjct: 1090 NLINNSDDKVKIYNFINNELIETVRTAKNCETEVAFTISKQAQQLYKESISEKEVILQGV 1149

Query: 868  IDQISI-SQQNIFIFEYKTHHH-VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            +D + I +++   I +YKT +  V      +   H  QL IY++ ++  Y  +++   + 
Sbjct: 1150 VDLLVILNEKEYMIIDYKTDNVSVGAGDSILVERHKEQLRIYKEAVEQYYCVENVQTYIY 1209

Query: 926  -YV 927
             Y 
Sbjct: 1210 SYT 1212


>gi|295111139|emb|CBL27889.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Synergistetes
            bacterium SGP1]
          Length = 1213

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 142/978 (14%), Positives = 292/978 (29%), Gaps = 110/978 (11%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT---------ILKKAQTLQQAS- 57
            +       + +  W   +    D+   ++  +                    + +++   
Sbjct: 239  AAGREVLALLRLSWRRAWATWRDVFDALAEDIRAAGAAAQASGRNVPDRLLMEFMERWEG 298

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK--------EKLKKSQDEFIK 109
            +    E     L +F+L      +       + KK  ++         E  +      + 
Sbjct: 299  RLSGPEAADDELRTFYLEVMDRERLKGGNSGLLKKVKEVLGTTLGAWQEAEEDEGTPALS 358

Query: 110  IRDRFNTYKMFKST--LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                       +     A L         ++  +++  +L F D+I+     ++      
Sbjct: 359  APSPDAPLPEPERLMRSALLRFCAAAWGLWDAERRRRGLLSFSDMILQARAAVES----- 413

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
                K  +   HIL+DE QDT  +Q+ +I +L          H   R+LFAVGD KQSIY
Sbjct: 414  ---GKAQRTFRHILVDEFQDTDPLQFGMIETL---------RHEGVRSLFAVGDPKQSIY 461

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F  AEP             A   G+  + + L +SFR+   +LT ++ +F+        
Sbjct: 462  GFRHAEPSLF----------AEAIGRADARVTLDVSFRTRGALLTRLNDLFAHIWRDGLG 511

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
            + ++ + +          G          +  +          +  +      +   LA 
Sbjct: 512  TSEAMSRLEFEPLSPAGSG----------ERGAGTTAPFSVLLAVKEGRAVLGARRRLAG 561

Query: 348  RIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             +A  ++  +       +      R ++  D  VL R R    L+            +  
Sbjct: 562  ALARRVARWVEEGRTVWDKGLNALRPLRYGDFAVLARTRGSHELLEDAFAA----AGVPA 617

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
            V +          + D++ L R     ED  +    L SP      D+  +   +   T 
Sbjct: 618  VQDRSRDYFSRGEVTDVICLLRAAEDWEDGAAVFGWLMSPFSGVPIDEARRCLERIGGTL 677

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
                 + +               +     I +   P    + +   ++       +    
Sbjct: 678  RTGRGVMEAL---KEALPDAAARLERTSLIGRRNGPAAILSPLDRDRRWLANLPEKERLR 734

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHT 579
             +  +   +      ++ S SSL      +++             H    N V + TVH 
Sbjct: 735  ALRNVRRAVAIARSFQRGSASSLAACADWMDRALRRGVDMEEPAWHGEGVNAVLLSTVHA 794

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            +KGLE PVV + DT  +           +  +  D P        S      ++      
Sbjct: 795  SKGLEYPVVAIFDTAKRRRPRTLCPSRTLGAAFADLPDELSASRPSAREPLSMAWERALT 854

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD---MVYDSFHNDERVK 696
            ++  +EE  RLLYV  TRA D LI C       E  +          ++       +   
Sbjct: 855  RQGEREEDLRLLYVAATRAQDSLIHCGLVTFGKEGSAPAEKGGWTSIVLDWMQGRGDCGP 914

Query: 697  KIKLTNSI----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
             +   +            A +     P   P+          +   +    FS ++    
Sbjct: 915  DLTGPDVELIPSGDGAQPAGKPQRAVPTPAPVAVARPDSGTRELAVLSATSFSLMEWCPL 974

Query: 753  EPYILNPSTIDTKGKTNLESLLSDNQ-TFNRGLIIHKLLQVIFTLPEHKRKNFITSYC-- 809
                     +D   +    +   D +   + G + H +L    +  E   +  +  +   
Sbjct: 975  AWRRRYRQGLDLAWEAPRGAAEEDGRGGSDLGSLAHWILARWPS-AEGDAEAELERWLTD 1033

Query: 810  ---------TKNAKLWPAKEYKNLLLSITRLLENPMM---TTAMSCDSYSEVSVSGKINC 857
                              +    L   +   + +        A+   +  E         
Sbjct: 1034 PRALRSLPTLLRDVWREEENRNALRPWLLHFVGSEAGVMVRGALPLGARRE----AGFRV 1089

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYK-THHHVPQEIEHIPYTHIAQLSIYEKILK---- 912
                + +SG +D +    +   + +YK T   +    E +   + AQL +Y    +    
Sbjct: 1090 EVGGLALSGAMDVVWREGEIWRVLDYKVT--LMQNAPEEL---YSAQLDLYALAARKGAE 1144

Query: 913  -DSYPNKSLVCLLIYVSE 929
                P + +   L+++ E
Sbjct: 1145 LAGAPCRRVEAGLVFLRE 1162


>gi|88705431|ref|ZP_01103142.1| DNA helicase II [Congregibacter litoralis KT71]
 gi|88700521|gb|EAQ97629.1| DNA helicase II [Congregibacter litoralis KT71]
          Length = 717

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 113/722 (15%), Positives = 231/722 (31%), Gaps = 135/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    +S                +  + + + Q          
Sbjct: 30  GAGSGKTRVLVHRIAWLIRAEGLSPHAVLAVTFTNKAAREMRGRIEHMLQIPTHSMWVGT 89

Query: 66  FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L+   L    ++    +N    + + +   +K   ++ Q +  +   +   + +   
Sbjct: 90  FHGLAHRLLKTHWKEARLPQNFQILDSDDQLRLVKRVCRELQLDESRWPPKQAQWYINAQ 149

Query: 123 TLASLTLAK--------------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L  A                + A YEEA ++  ++DF +L++  ++L      +  
Sbjct: 150 KDEGLRAAHIEPPLGDLYIKTMLQVYAAYEEACERGGMVDFAELLLRAHELWLH---APE 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +          IL+DE QDT+ IQ+  +R L  D             + AVGD+ QSIY 
Sbjct: 207 VLAHYQGRFRQILVDEFQDTNTIQYAWLRVLAGD----------RIPVVAVGDDDQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + + R                 ++ L  ++RST  IL   + V        G  
Sbjct: 257 WRGAKIENIQRFGEDF--------GGAKVVRLEQNYRSTQTILQAANGVIGNNSGRLGK- 307

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW        S    +     + F+   +       AR 
Sbjct: 308 --------------------ELW-------SSGETGEPLQLYAGFNEQDE-------ARF 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I N +                + + +L R    + ++            +      
Sbjct: 334 IVEQIENWVSNGQA----------RRSVAILYRSNAQSRVLEEAL----LRSGLPYRIYG 379

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                + L I++ MA  R ++S+ DD +F  ++ +P        +  +    R +  +++
Sbjct: 380 GQRFYERLEIRNAMAYLRLLVSRGDDAAFERVINTPPRGIGSKTLDVLRATAREQQCSLW 439

Query: 468 EYIQKFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFI 518
             IQ      +   +           + EL  +    +  +     +         ++  
Sbjct: 440 HAIQACQEHKLLPARALTAMDGFRVLVDELDTLTDPMTLEELVDQAIRRSGLIAYHEKEK 499

Query: 519 SRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
              G   ++ L+E ++       E +  S LQ+ +                + + V++MT
Sbjct: 500 GEKGLARVENLEELVSAARTFVPEGDELSPLQQFVDSAALDAGE--GQADPHEDSVQLMT 557

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+V L      +F H+                                   
Sbjct: 558 LHSAKGLEFPLVILAGMEENLFPHRMS--------------------------------- 584

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +    EE  RL YVG+TRA ++LI+    +       +       V +         
Sbjct: 585 -IEEPGRLEEERRLCYVGITRAMERLILTYAESRRLHGSDSYNPPSRFVREIPSELVNEV 643

Query: 697 KI 698
           ++
Sbjct: 644 RL 645


>gi|229521160|ref|ZP_04410580.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80]
 gi|229341692|gb|EEO06694.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80]
          Length = 1208

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 125/893 (13%), Positives = 260/893 (29%), Gaps = 134/893 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    +      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   L  D+            L  +GD K
Sbjct: 366  DEQGLLGERIRSLYPVAMIDEFQDTDPLQYSIFSRLYLDY--------PQCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP---QSKTDYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L     
Sbjct: 521  QMAEACAAQIQHILTASASGAAIFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAIASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLTESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++          +        + 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDAESATTWVDLTGNEEA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------ 683
            +    +    E  RLLYV +TRA     I      +        + +             
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 684  --------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                     +     N   V +        +                  +  +   ++  
Sbjct: 851  GGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTS 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLII 786
               +  +      + + E  +L     D       +    +          +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +        +           ++   ++    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            Q   ++ ++K++H       + P           +  Q  IY   L     ++
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLGSAMVDHRYDLQYQIYALALHRFLRSR 1143


>gi|227431965|ref|ZP_03913985.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352250|gb|EEJ42456.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 1230

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 119/643 (18%), Positives = 220/643 (34%), Gaps = 67/643 (10%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD-----------------EFI 108
           +  L    L        +  T+ I K+ PDL   L+ ++                   + 
Sbjct: 273 WDELREAILDTPSGKINS-QTKAI-KEDPDLSATLEVARQIKGQVVGVKSQMNSLITSYF 330

Query: 109 KIRD---RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
            + +   +    + +K     + + +     + + K+++ +LDF DL      +L     
Sbjct: 331 ALDEKSWQLVQKQSYKLIDTLIIVTQAFRESFRKTKREDKLLDFPDLGTLAVAILSDDVT 390

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              I      + + IL+DE QD + +Q  ++ S+           S+   ++ VGD KQS
Sbjct: 391 KQTI----QGQFDEILVDEYQDINQLQETLLTSV-----------SNGHNMYMVGDVKQS 435

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA- 284
           IY F  AEP     + +   K+          I+L  +FRS  ++  + + +F+   +  
Sbjct: 436 IYGFRQAEPSLFTNKYKQFAKK----ESDDIRIDLADNFRSQNNVTNITNLIFTQIMDET 491

Query: 285 -QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
              ++      +  +++    V  V   + +V   +       E +              
Sbjct: 492 LGDIAYAGEAKLVPKAAYPDDVPAVFHMDIIVEDTEEDLETDTEVF----------EKRQ 541

Query: 344 ILARRIAYTISNMIGT---DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                +A  I  +  T   D        R ++  DI +L R +     +    R      
Sbjct: 542 AQYALLAERILKLRETSIFDRKADPAGLRPVEYSDIAILTRAKSGYIDLVSTLRA----A 597

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I V           + +  ++ + R I +   D+    +L+SP+FNF E+++  I    
Sbjct: 598 GIPVQVEGVGNYFQTMEVYLMLDILRVIDNPHQDIPLAAVLRSPVFNFDENELAAIRIAD 657

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-S 519
              +               K Q+ +  I +   IA        F  I             
Sbjct: 658 KMHDYWTALQANA--QQDQKAQNFLNLIEKWHAIATQNDLVALFWAIYDDTAWLDYVAGM 715

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ----YPPTIKRAHSANHNEVRIM 575
             G +    L     +    + N++S L   I  +EQ         + A   +   VRIM
Sbjct: 716 PGGAQRQANLHALYEYARTYQNNTHSGLFRFIRYIEQLQSGDSDLGEAAQETDAQAVRIM 775

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE P+VFL +      +      + I  +                       +
Sbjct: 776 TIHASKGLEFPIVFLPEFDKSFNTQNLKGGLLIQKNEGIGLEYIQPDALVMIPTLQKLVV 835

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
            + LK+ +  E  RLLYV +TRA  QL I        E  +  
Sbjct: 836 QQALKRQSWSEEMRLLYVALTRAEQQLFIIGSVKVKGEAGNQS 878


>gi|119715745|ref|YP_922710.1| UvrD/REP helicase [Nocardioides sp. JS614]
 gi|119536406|gb|ABL81023.1| UvrD/REP helicase [Nocardioides sp. JS614]
          Length = 1073

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 128/956 (13%), Positives = 255/956 (26%), Gaps = 170/956 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN---AHYEEAKKKN 144
             + +   +     + +  E +  ++R    +  +  ++++     L      Y   K+  
Sbjct: 191  AVREIDTEACRGFEAALAEEVAGKNRVTYREAIEKAISAIDRRGELLGLVEAYRRLKRDL 250

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             ++DF D I     L  ++     +          +L+DE QDTS+ Q  ++  L     
Sbjct: 251  GLMDFSDQIELGARLASEQPD---VGELERSRFKVVLLDEYQDTSVAQAVMLSRLF---- 303

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  S    + AVGD  Q+IY + GA    +L              +      L ++ 
Sbjct: 304  ------SGGHPVTAVGDPNQAIYGWRGASVSNILNFADTFPA---AGSRAVPTYPLTVNR 354

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A IL V +++      A  L E         +    + GTV                
Sbjct: 355  RSDARILEVANRL------AAPLYEKYGQVEPLVAKPEAETGTVT--------------- 393

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                              + +    A  ++ ++G       G         I VL R   
Sbjct: 394  ------------------TQVFETHADELAWLVGAVKEAHEGLPADGGWAQIGVLTRDNA 435

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                +            + V       L     + +++A    +     + + + +L  P
Sbjct: 436  HAEDVFDAL----TSAGVPVEIVGLSGLLRLPEVAEIVATLTLLHDVTANAALLTLLTGP 491

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFAN----------------------------- 475
             +     D+  +  +  E    +      A+                             
Sbjct: 492  RWAIGPRDLRLLGRRALEIAGRHGRGADAASITDQLLEIADGIDPAELPSLDDALADPGE 551

Query: 476  --CGISKFQHVIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQF---ISRFGNEVIDV 528
                    +       EL  +  +      D    I+       +    +S       D 
Sbjct: 552  HAYSPEALERFGLLSAELRMLRTYVGEPLLDIVRRIIDTSGTDVELGSAVSPAAAARRDN 611

Query: 529  LDEFLNFTLRNEQNSYS-SLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLE 584
            LD F+      +      +L  L++ L         +  A     + V+++TVH AKGLE
Sbjct: 612  LDLFVKAVAEFQAVDGDVTLPALLAYLTAEDDQGNGLDVATPTEADSVKLLTVHRAKGLE 671

Query: 585  SPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
               VFLV      F     + +      I+P+        +           +       
Sbjct: 672  WDSVFLVGVCETRFPSNRSRTLWTSSPAILPAPLRGDAGDLPQLAGH-DKAALDAYRAAT 730

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +    EE  RL YV  TRA+ +L +  +  +          +  +V D  H+        
Sbjct: 731  RDHDAEEELRLGYVAFTRAARRLSVTSYLWSPRATPFGPSAYQQVVRDQLHDWAEPPTWL 790

Query: 700  LTNSINKDEWIAYEWSTHHPENT------------------------------------- 722
                            +     T                                     
Sbjct: 791  ARPEKGDPNPYDAVDPSRPWPATGTGREAALRIEAARRVREVDAAAVDAGLDMIETARVA 850

Query: 723  --PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
                E E  + +   ++     +  P          L         +         +   
Sbjct: 851  EWDAELERLLAEARRDRSTDLAVPLPPSLSATALARLREDPETFARELARPMPRPPSSAA 910

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
              G   H  ++      +    ++       +A +    + K L+ +            A
Sbjct: 911  RFGTRFHAWVE--ARFGQQDLFDYGDLPGRADAGIDDDSDLKELIATFEA------GPFA 962

Query: 841  MSCDSYSEVSVSGKINCPKK-DIIISGRIDQISI----SQQNIFIFEYKTHHHVPQEIEH 895
                   E   +  +  P     ++ GRID +            + ++KT+     +   
Sbjct: 963  TRTPHQVEAPFALVLRHPGGPGQVVRGRIDAVYAESTPEGDGFLVVDWKTNRAATADP-- 1020

Query: 896  IPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                   QL++Y     + +  P + +     YV   +V   P      A   +  
Sbjct: 1021 ------LQLALYRLAWAELHDLPLERVRAAFYYVRTGEVVEPPDLPDRAALEALLD 1070


>gi|53805125|ref|YP_113202.1| exodeoxyribonuclease V subunit beta [Methylococcus capsulatus str.
            Bath]
 gi|53758886|gb|AAU93177.1| exodeoxyribonuclease V, beta subunit [Methylococcus capsulatus str.
            Bath]
          Length = 1200

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 129/980 (13%), Positives = 272/980 (27%), Gaps = 137/980 (13%)

Query: 14   ELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQT---QCIEERFSLL 69
            E   + L                 +              + + AS     +  +  F+  
Sbjct: 216  ERDEQALLAAFGEARRLWQADAFGIVRLLEEAIDQLNGVSYKAASLETARKGWDAWFATN 275

Query: 70   SSFFLTQKF--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                  +      +  ++     K +         + +  + ++D               
Sbjct: 276  DPLAPVEDKVQLFRAAMLKGGTKKGNTTPYHPFFDAAENLLALKDGIQGRLAVARLGLLR 335

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             L ++        K++  V+ F+D++ N ++ L       W+   +       LIDE QD
Sbjct: 336  ELVEHGAEALRAEKRRRRVIGFDDMLWNVHEALT-SGCYPWLAPALRSRYPVALIDEFQD 394

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T  +Q+ + R+L                +F VGD KQ+IY F  A+    L  +      
Sbjct: 395  TDPLQFAIFRALYLAEGAVSGP------VFFVGDPKQAIYGFRNADLYTYLGARH----- 443

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 Q      L  + RS  +++   + +F     A  L       +R  +        
Sbjct: 444  -----QADREYTLVENQRSVTEVIDACNALFGANPRAFLLEGLEYRPVRPGAK------- 491

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI----AYTISNMIGTDTIF 363
                 + V    ++     + W    D        +   RR     A  I+ +I      
Sbjct: 492  ----PRPVFTDVTEPRSPFQVWLLPRDEAGGWLPRTEAVRRCTDTTAAEIARLIQEGMAG 547

Query: 364  SNG-KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                 +R ++A DI VLVR+         L R       +  V   +  +   L  +++ 
Sbjct: 548  RIRLGERALRASDIAVLVRRHAQGR----LIRQALARLGVGSVELSQASVFHTLEAEEIE 603

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             +   +L    D      L + +       I  I                       +  
Sbjct: 604  RILLAVLEPGRDRLLRAALATEIMGCDALTIAGISADED------------------RLL 645

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLR 538
             ++    E   + Q       +  +L  +   ++ +++   E        L E L+    
Sbjct: 646  EIMLRFGEYRELWQLRGFGPMYRRLLHDEGVARRVLAQPDGERRLTNLLHLGELLHQAQA 705

Query: 539  NEQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               +  + L+ L S           +    ++ N V+I+T+H +KGLE PVVF       
Sbjct: 706  GLTSPDALLRWLQSRRRDSAAQEDAQLRLESDQNLVQIVTIHKSKGLEYPVVFCPYLWEG 765

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                   K+  I         +  + P++K+       +    ++    E  RL+YV +T
Sbjct: 766  NR-GARGKQEGIEYHDESGVPVLDFRPEAKNDPG----IKWQRRQEEDAETLRLIYVALT 820

Query: 657  RASDQLIICKHSNTSNEK-----KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            RA  +  +      +  +       + R+  + +     +     +   T          
Sbjct: 821  RAVQRCYLFAGVYRTKREASASCGESTRSMLNWLACGKDHSPEQWQDAKTRLDPAHIEAG 880

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPK-KLFSPIKNDINEPYILNPSTIDTKGKTNL 770
            +          P+              + +    +P           + +++    +   
Sbjct: 881  WRALPDAIGVAPMPAIVVPAMAGPSSGLERLAAQTPPAWIPPGWSTGSFTSLVRAMEAGG 940

Query: 771  ESLLSD-----------------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
            E    D                        +    G  IH L +           + I  
Sbjct: 941  EGRDHDALSLAPALGPPPAALPENDILRFPRGAAAGTCIHHLFEQADFTDPAGWDDAIGR 1000

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLLENP-----MMTTAMSCDSYSEVSV----------- 851
                  +         L   +  +L         ++        SE++            
Sbjct: 1001 ALALRPQGSETAAPAMLKSLLADVLATDLGDGLRLSEIGRGQRLSELAFRLPAEGLDPVR 1060

Query: 852  -----------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH---------HVPQ 891
                        GK++       + G ID +   +   ++ ++K++H             
Sbjct: 1061 LNALLRDHGYAMGKLDFRLLSGYLQGAIDLVFRHRSRYYLLDWKSNHLGYTREDYGPPAL 1120

Query: 892  EIEHIPYTHIAQLSIYEKIL 911
                    +  Q  +Y   L
Sbjct: 1121 AETMAAEGYHLQYLLYTVAL 1140


>gi|225552476|ref|ZP_03773416.1| ATP-dependent DNA helicase PcrA [Borrelia sp. SV1]
 gi|225371474|gb|EEH00904.1| ATP-dependent DNA helicase PcrA [Borrelia sp. SV1]
          Length = 659

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 187/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGANYNNMLQFEKDY-------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 264 -NAKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +   +   S        
Sbjct: 308 -------------VIDVFIFEDEIQES-------EFVANRIIELSRLEGFKSKK------ 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 342 ---IGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 394

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +                     
Sbjct: 395 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDITFSFTNISSYDKALNKQA 454

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 455 IESIEDFVSFIEEYQYKFSITKKTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 514

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L               N  + +MTVH+AKGLE   V
Sbjct: 515 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEEAENININLMTVHSAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 575 FFIAVEDNIIPHHR---------------------------------IIEDSEVDLEEER 601

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D L+I   +    +++   +     + 
Sbjct: 602 RVFYVALTRAKDSLVITMANKRKKDRQIFDQLPSRFIS 639


>gi|183600255|ref|ZP_02961748.1| hypothetical protein PROSTU_03807 [Providencia stuartii ATCC 25827]
 gi|188020043|gb|EDU58083.1| hypothetical protein PROSTU_03807 [Providencia stuartii ATCC 25827]
          Length = 673

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 113/715 (15%), Positives = 234/715 (32%), Gaps = 138/715 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I+ + +L +E        KA  ++        +++ +
Sbjct: 59  AAREMKERV-AQTLGRKEARGLIISTFHTLGLEIIKREY--KALGIKANFSLFDDQDQMA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL                  ++ ++  DL ++L  S   +               +    
Sbjct: 116 LLKELTF-------------DLLEEDKDLLQQLISSISNWKNDLLAPEQVLAKVRSEKEH 162

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A+     YE   K   VLDF+DLI     LL   +    +R +  Q+I ++L+DE QD
Sbjct: 163 RFAE-CYRRYELHLKSCNVLDFDDLISKPTLLLSHNEE---VRERWQQKIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L                   VGD+ QSIYS+ GA P+ ++   +   K 
Sbjct: 219 TNTSQYQLVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPK- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I+L  ++RS+  IL   + + +   +       ST               
Sbjct: 268 -------LNVIKLEQNYRSSERILKAANILIANNPHVFEKKLFST--------------- 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                + +    +   +     A R+   I  +I    I     
Sbjct: 306 -------------------LGYGAPLKVITANN-EDHEAERV---IGELIAHHFI----- 337

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q KD  +L R    + +   +        +I    +          IKDL+A  R 
Sbjct: 338 -NKTQYKDYAILYRGNHQSRIFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISK 480
           I + EDD +F+ ++ +P        I K+        +++Y+               ++ 
Sbjct: 393 ITNPEDDSAFLRIVNTPRREIGPKTIQKLGEWANQRGKSLYQASFDLGLEQTLTGKGLTA 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNF 535
            Q   +++ +++  ++          +L                +     +  +++   +
Sbjct: 453 LQQFTRWMEKIVQQSEREPLLA-VRDLLREMDYESWLYETSASTKAAEMRMKNVNQLFTW 511

Query: 536 TLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                   + N   SL ++++         +       ++V++MT+H +KGLE P VFLV
Sbjct: 512 MSEMIEGDDLNDPMSLDQVVTRFTLRDMMERGEDDEESDQVQLMTLHASKGLEFPYVFLV 571

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  H+                                       +   +E  RL 
Sbjct: 572 GMEEGLLPHQSSID-----------------------------------EDNIDEERRLA 596

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           YVG+TRA  +L            +  +      + +   +D   ++ +   +  +
Sbjct: 597 YVGITRAQKELFFSHCRERRQYGELIRPELSRFLLELPQDDLEWEQQRKVVTAEE 651


>gi|254526415|ref|ZP_05138467.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT
           9202]
 gi|221537839|gb|EEE40292.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT
           9202]
          Length = 802

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/569 (17%), Positives = 189/569 (33%), Gaps = 96/569 (16%)

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSL-TEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
           +R    +   HIL+DE QDT+  Q+E+I+ +   +    K  +   R++F VGD  QSIY
Sbjct: 245 VRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWEDRSIFVVGDADQSIY 304

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF  A+ + ++  +   +    +   K S+I+L  ++RS+++IL   + +          
Sbjct: 305 SFRAADFRILIGFQEDFKTSIND-NTKSSLIKLEENYRSSSNILDAANSLIENNSERIDK 363

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              +T                                +  +  S  D + +       A 
Sbjct: 364 VLKATK----------------------------EKGELLTLLSCDDEISE-------AE 388

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I ++        N   +    K+  +L R R  + ++          ++I     
Sbjct: 389 AITNKIKSL--------NNYNQNPIWKNFAILYRTRAQSRVLEESL----VRWRIPYTIF 436

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                 D   IKD +A  + +++  D++S + ++  P     +  I K+          +
Sbjct: 437 GGLRFYDRREIKDAIAYLKVLVNSSDNVSLLRIINVPRRGIGKTTIQKLNELSNRLNIPL 496

Query: 467 YEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E +    +                + +++L+   +   P     LIL         +S 
Sbjct: 497 WEVLNDKQSLEETIGRPSKGINKFTEIMNDLMCYLENSGPAQLLQLILEKSGYLSDLLSS 556

Query: 521 FGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMT 576
              E  D    L E +N   + E+ + S   ++   L     T        N N V +MT
Sbjct: 557 GTEESEDRRNNLQELINAATQYEEETESG--DVEGFLSTAALTTDNDTKKNNPNSVTLMT 614

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE   VF+      +F          +                           
Sbjct: 615 LHNSKGLEFQNVFITGLEQGLFPSHRSIDTPSL--------------------------- 647

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                   EE  RL YVG+TRA +++ +             + T   +       D    
Sbjct: 648 -------LEEERRLCYVGITRAKERVFLSHARERRLWGGMREATIPSIFLSEIPEDLMDG 700

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725
           ++  T   +       +  T    N   E
Sbjct: 701 ELPQTGGASIRRDWHLDRLTRVDRNNQNE 729


>gi|254785006|ref|YP_003072434.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901]
 gi|237686397|gb|ACR13661.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901]
          Length = 1138

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 154/995 (15%), Positives = 299/995 (30%), Gaps = 129/995 (12%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTL----QQ 55
            L   F   + E+ + +   + P    Q  ++  Y  +     G  + L     +     +
Sbjct: 214  LSEHFATVVYETIDAVVARIPPALQAQWVELAAYGAANVRAAGKASALSACIDIDLDESR 273

Query: 56   ASQTQCIEERFSLLSSFFLTQKFTPQKNI-----------ITQEINKKSPDLKEKLKKSQ 104
                     ++  L     TQK   +K++             ++         + L    
Sbjct: 274  QLPDADALPQWLGLIELVFTQKQEWRKSVTVAQGFPPGKGADKKACDARKQQLKALIAEL 333

Query: 105  DEFIKIRDRFNTYKMFKS----------TLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
                 + D+        +            A  T+   L+A      K+   +DF ++ +
Sbjct: 334  QSVPGLDDQLADILQLPAADVDDSQWQLLDALFTVLPMLSAQLTLVFKELNRVDFTEVSL 393

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
                 L   +  + +  K+D  ++HIL+DE QDTS  Q E++  LT  +          R
Sbjct: 394  AARRALGSAESPSQLAMKMDYRLSHILVDEFQDTSAAQVELLNQLTAGWV-----PDDGR 448

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            TLF VGD  QSIY+F GA     L  +                + L  +FRS A ++  V
Sbjct: 449  TLFCVGDAMQSIYAFRGANVGLFLNAREQ-----GLENVPLRCLRLTANFRSQAGVVHWV 503

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            +KVF+        S  +  +  H +        V              NP+         
Sbjct: 504  NKVFAQ-------SFPAQHSASHGAVAYAASTVV--------------NPELPGDAVRLH 542

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                + + +  A ++   I +                    I VLVR R     I    +
Sbjct: 543  GFIDDGAGAREAAQVLDIILSARAEQPDAK-----------IAVLVRSRSALAAIVPALQ 591

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                   +     D   L +  A++DL++L R +L   D ++++ +L++P    +  D+ 
Sbjct: 592  ----GAGLRYRAVDLEPLAETPAVQDLLSLTRALLHPADRVAWLAVLRAPWCGLALTDLD 647

Query: 455  KICTQRH--------ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             +C  +         E           +  G ++   V+  +          +   +   
Sbjct: 648  ALCRPQESKLVPTVLEQCEYALADNCLSESGAARLARVLPLLSAASEQRLRKTFRAWVEG 707

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
               A  G        G   ++    F     + E    S L                   
Sbjct: 708  CWLALGGGASL---PGAASLENARMFFRLLEKWE--YASDLPAYRVLANAVNQLYAAPDP 762

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP--- 623
               + +++MTVH +KGL+  VV +     +  S      +       D     +  P   
Sbjct: 763  EADDSLQLMTVHKSKGLQFDVVIVPGLAKRGNSRSDDLMLWQERLNRDGESQLLMAPLTR 822

Query: 624  -QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS--NQRT 680
                 R+     L     K    E  RLLYV  TRA  +L +C  +  +++        +
Sbjct: 823  ASGGDRHANYQHLAAEAGKKMDLETCRLLYVACTRARQRLHLCFATAENSKNPQELRAPS 882

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
               M+   +                    +        PE  P   E  +   +    + 
Sbjct: 883  SSSMLASIWQA-----------------VVLQVQRYPAPEIEPSATESWVAPPLQRF-VA 924

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR--GLIIHKLLQVIFTLPE 798
                  ++ +      + P   D           S     +R  G ++H+ LQ+I     
Sbjct: 925  HWTPPLVERENLLLGFIPPYDYDEAQNRPELEWQSVANRASRHLGTLVHRYLQIISEQGL 984

Query: 799  HKR----------KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
                                    A     +  +     + R+L++      +S D    
Sbjct: 985  EHWSRTRVHACAPAMAAGLRELGVAPALVPQLTERAGRHLARILDDERGRAILSNDYRFH 1044

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHI-----PYTHIA 902
             S    +    +       +D++      + +I +YKT      E            +  
Sbjct: 1045 AS-EYSLTLVTRSGPQQLVVDRVYTDAAGVTWIVDYKTAEPAEHEALDAFFRSQQELYQP 1103

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
            ++ +Y   L  +     +   L + +  +   + +
Sbjct: 1104 KMRLYRAALLQA-GFSQVRLALYFPTLAEWLELSE 1137


>gi|229820063|ref|YP_002881589.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229565976|gb|ACQ79827.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 1110

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 141/966 (14%), Positives = 295/966 (30%), Gaps = 86/966 (8%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L   FG   +     + +          +      + ++             L       
Sbjct: 180  LARAFGADWDLIEGHVLRGASNDSALPDAAPLVDEAQALAARAAECTDPDDKLLTRLSE- 238

Query: 61   CIEERFSLLSSFFLTQKFTPQKNII-------TQEINKKSPDLKEKLKKSQDEFIKIRDR 113
                     +         P++           +            +   +     + + 
Sbjct: 239  -----IRAWAQVLAAADGDPRRTYAALVALGEPRFGRVGRKTSWPDVDAVRAACTALVEH 293

Query: 114  FNTYKMFKSTLASLTLAKYLNAHY---EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             +      +  A   LA+++ A       A+     L+F DL++   DLL+       +R
Sbjct: 294  VSAAAAAFADAAVRPLARWIAARVVRDARARAAEGALEFHDLLVLARDLLRT---REDVR 350

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF----VGKNTHSSPRTLFAVGDEKQSI 226
              +      +L+DE QDT  IQ E+   +            +    P +LF VGD KQSI
Sbjct: 351  SSLQAAYPRLLLDEFQDTDPIQVELAVRIAAGAEGGAGDWHDVRVPPGSLFVVGDPKQSI 410

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F  A+ +  L  +               +  L  +FRS A +L  V+  F        
Sbjct: 411  YRFRRADIRTFLDVRTWLGD----------VCSLTTNFRSAAPVLAWVNATFGELIQPVD 460

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
             ++ +   +      +G    V +      Q   + +          D       A+   
Sbjct: 461  GAQPAYEPLDAVRPPVGVGPAVTVLGAQPHQDLPRASAALLREREAADVAAVLLRAAGQG 520

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +                G++R ++  D+ VLV  R   P +            I    
Sbjct: 521  WTVHD-----------PRGGEERELRWGDVAVLVPARTSLPFLVEALDA----AGIPYRA 565

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                ++     ++ LMA  R I    D  S V  L+S ++   +DD+    + + +  + 
Sbjct: 566  ESSSLVYSATEVRALMAAARAIADPGDQFSVVTALRSQVYGCGDDDL---WSWKRDGGSF 622

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ--QFISRFGNE 524
            +       +         + ++  +   A++ +P +    +   ++  +          +
Sbjct: 623  HLLAPADEDRADHPVAQGLAHLRTVHRWARWATPSEVLARVAADRRMFEVPADAPAHARD 682

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT-----IKRAHSANHNEVRIMTVHT 579
            V   L   L+      + S+  L+  ++   +                + + VRIMT+H 
Sbjct: 683  VWRRLRFVLDQARAWSEVSHGGLRAYLAWAARQADESSRVAEAILPETDVDAVRIMTIHA 742

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            AKGLE P+V L    SQ      ++ +                 +   + N  +      
Sbjct: 743  AKGLEFPLVVLSGLTSQQRRASGVRLLWT-------DDGYAVRLRQSVQTNDFTAAAPLD 795

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------SNQRTWYDMVYDSFHNDE 693
            ++    E  RLLYVG TRA D L++  H   +              +       +  +D 
Sbjct: 796  EQMDDHERRRLLYVGATRARDHLVVSLHRGPTAAATHARLLADAGGSGAGAHAFTAADDG 855

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
              +  +       D              +      +   L   +       S        
Sbjct: 856  AARPERAAAPAAPDHAAWAGRLEAARAASRRVATHSASGLEGTEPEVVFAHSATGRANAG 915

Query: 754  PYILNPS---------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
              +++P          +        L            G  +H +LQ +    +      
Sbjct: 916  DAVVDPGGGEGDALPGSAKGPRDLALPPWSKGRYGTAIGRAVHGVLQAVDLRVQLADAGE 975

Query: 805  ITSYCTKNAKLWPAKEYKNLLLS-ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
            + +     A++    E+ +++       L +P++  A   + ++E  V+          +
Sbjct: 976  LDAAVEAQARVEGVLEFADVVADLALSALASPLVQDAARREHWAETFVA---TLEPDGRV 1032

Query: 864  ISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
            + G +D +       + I +YKT       +      +  QL  Y + L+D+  +     
Sbjct: 1033 LEGVVDLLVRDADGAVTIVDYKTDAVPEAALGVRTEFYAPQLRAYARALRDAGADVR-RA 1091

Query: 923  LLIYVS 928
            +L++++
Sbjct: 1092 VLLFLA 1097


>gi|317181161|dbj|BAJ58947.1| DNA helicase II [Helicobacter pylori F32]
          Length = 681

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 97/572 (16%), Positives = 184/572 (32%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHKKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKRGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIK 486
                 +L  P     +     I +    E   + E ++      K            I 
Sbjct: 388 RFFIKRVLNKPSRGLGKITQELIFSLLDGEGLNLEEALKLGVFKGKLNPKNEYALNKFIA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVERFCARFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA ++L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEELQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVQERSYFGRKISCSPSVFLEEAKLLKQDNPP 619


>gi|307721687|ref|YP_003892827.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
 gi|306979780|gb|ADN09815.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
          Length = 682

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 113/611 (18%), Positives = 213/611 (34%), Gaps = 133/611 (21%)

Query: 82  KNIITQEINKKSPD--LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           K  I ++IN + P   +  ++ + ++  +   D +   ++F            + A YE+
Sbjct: 117 KKRIIKKINSELPTPLIASEISRYKNSLMSPDDAYKQAELFSYKQ-----IAEVFAEYEK 171

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
              +N ++DF+DLI  T  LL +      +     Q+  +I+IDE QDT+          
Sbjct: 172 YLLENNLVDFDDLIALTYKLLDENPE---LAKATSQKYQYIMIDEYQDTNE--------- 219

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                + +   ++   L  VGD+ QSIY + GA  + ++   +             ++ +
Sbjct: 220 -LQLKLLQKLCTAHNNLCVVGDDDQSIYGWRGAHIRNIMEFDQDF--------SGTNVFK 270

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS A IL V + +     +  G +          ++R        L         
Sbjct: 271 LEENYRSRAPILKVANALIEHNRSRLGKN--------LIATRGNGDDVATL--------- 313

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                               +  +  AR++A  +  ++             ++AK+I +L
Sbjct: 314 ------------------NSNDENEEARKVAMKVQKLLDNG----------VRAKEIAIL 345

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  I        N   I+          D   IKDL++  R I +  DD S   
Sbjct: 346 YRVNVLSRSIEEGL----NRSGINYKLVGGLRFYDRAEIKDLISYIRVITNHHDDFSLKR 401

Query: 440 MLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK---------FQHVIKYIH 489
           ++  P     +  + KI         ++YEYI+  A   +            +  +K I 
Sbjct: 402 IVNKPKRGLGKASLDKIELAAHERGTSLYEYIKNAAMKELEGLVRKKNAATLKEFVKNIE 461

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFI--SRFGNEVIDVLDEFLNFTLRN-EQNSYSS 546
           E+  +A+  + ++F   +L      +      + G E I  +DEF        +++  SS
Sbjct: 462 EIAKVAKEAT-YEFID-VLDDTFSLKDIYKNMQDGEERILNMDEFYGLFRDFVKKSQQSS 519

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L E ++EL                 + +M++H +KGLE   VF++               
Sbjct: 520 LDEFLNELTLQSE----QDQVEGESIYMMSIHASKGLEFEHVFVIGMEEGFLPLVGDGS- 574

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                                 EE  RL YV  TRA + L +C 
Sbjct: 575 ------------------------------------DLEEERRLGYVAFTRAKETLTLCH 598

Query: 667 HSNTSNEKKSN 677
             +   + + +
Sbjct: 599 AGSRFYKGRRS 609


>gi|84516406|ref|ZP_01003765.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53]
 gi|84509442|gb|EAQ05900.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53]
          Length = 797

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 102/633 (16%), Positives = 179/633 (28%), Gaps = 117/633 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+        +DF D++++   + +K      +  +      +IL+DE QDT++ 
Sbjct: 197 DLYAAYQRRLIDLNAVDFGDILLHMVTIFQKHPD---VLRQYQTRFRYILVDEYQDTNVA 253

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              + +  VGD+ QSIY + GAE   +LR +          
Sbjct: 254 QYLWLRLLAA----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEADFP------ 297

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V +  +   G +                       
Sbjct: 298 --GAHVVRLEENYRSTPHILAAASGVIAANKGRLGKT----------------------- 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
               S  + +       W                AR I   I       +         +
Sbjct: 333 -LFTSVEEGEKVRLIGHWDG-----------EEEARWIGEEIEA-----SQRGTRGMAPL 375

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               + +LVR                    +           + + I+D MA  R  +S 
Sbjct: 376 GLDSMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRLAVSP 431

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484
            DDL+F  ++ +P     +  I  I            E   +    +     G+ +   +
Sbjct: 432 ADDLAFERIVNTPKRGLGDKAIQTIQRTARANRVSLVEGARLVCQGRLLGGKGLKELTEL 491

Query: 485 IKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           +  +        A+  +      +IL        + +    E    ++ L E +      
Sbjct: 492 VAGLDRWHAQLRAEADTHVALAEIILDESGYTGFWQNDKTPEAPGRLENLKELVKALENF 551

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +         +V IMT+H AKGLE P VFL      +F 
Sbjct: 552 EN--------LQGFLEHVSLIMDNETEEAGEKVSIMTLHAAKGLEFPSVFLPGWEDGLFP 603

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 604 SQRS--------------------------------MDESGLKGLEEERRLAYVGITRAE 631

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +   I   +N     +   +     + +    D  V                   ++   
Sbjct: 632 ELCTISFAANRRVYGQWQSQMPSRFIDELPSRDVAVLTPPGLYGGGFGAAGMAASASPAI 691

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                          D    P       ++   
Sbjct: 692 MGAAGSDLHQKAHDADVYNSPGWRRLQTRSQQR 724


>gi|225548716|ref|ZP_03769763.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 94a]
 gi|225370746|gb|EEH00182.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 94a]
          Length = 659

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/578 (17%), Positives = 188/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGANYNNMLQFEKDY-------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 264 -NVKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +   +   S        
Sbjct: 308 -------------VIDVFIFEDEIQES-------EFVANQIIELSRLEDFKSKK------ 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 342 ---IGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 394

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +   A                 
Sbjct: 395 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDIAFSFTNISSYDKALNKQV 454

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 455 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 514

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L               N  + +MTVH+AKGLE   V
Sbjct: 515 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEEAENININLMTVHSAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 575 FFIAVEDNIIPHHR---------------------------------IIEDSEVDLEEER 601

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D L+I   +    +++   +     + 
Sbjct: 602 RVFYVALTRAKDSLVITMANKRKKDRQIFDQLPSRFIS 639


>gi|257460429|ref|ZP_05625530.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268]
 gi|257441760|gb|EEV16902.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268]
          Length = 686

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 106/590 (17%), Positives = 195/590 (33%), Gaps = 119/590 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YE     N ++DF+DL+I    +L   +    +  +I +   +I +DE QDT+ 
Sbjct: 174 ADAYKRYEAYLAANNLVDFDDLLILPYKILSANE---RLCDEISRRYVYITVDEYQDTND 230

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+++++ L            +   L  VGD+ QSIY + GA  + +L  K         
Sbjct: 231 IQFKLLQKLCA----------AHENLVVVGDDDQSIYGWRGARIENILNFKDQFSN---- 276

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I+L  ++RST +IL+  +++ S  +N  G S  S           G    +++
Sbjct: 277 ----VKFIKLEQNYRSTDEILSAANELISHNKNRLGKSLTSMN---------GGGEKIEI 323

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                           SI A +IA  I  ++ +           
Sbjct: 324 LR--------------------------SDEESIEAAKIAEAIKKLLSSG---------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +    I VL R    +  +        N  KI           +   IKD +A  R +  
Sbjct: 348 VAPSQIAVLYRVNALSRALEEGL----NRAKIPYKMVGGVKFYERAEIKDTIAYLRLVND 403

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           + DD S   ++  P     +  + K+    R    ++++   +      +K    +  + 
Sbjct: 404 EHDDFSMRRIINVPKRGIGKVSLAKLEELSRLRLISLFDAFSEPDAGLSAKAAQALAELK 463

Query: 490 ELIHIAQFCSPHDFFTLI--LGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQNSYS 545
               IA   +  D    I  L    G + + +    G + +  +DEFL        N   
Sbjct: 464 S--GIASISALADTIKKIEALEPTFGLKAYYASLPDGADRVANIDEFLAMLKDEASNKPD 521

Query: 546 -SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             L E ++EL           +   + + IM+VH +KGLE   +F++      F      
Sbjct: 522 FDLAEFLNELSLLSD----QDAIMGDAINIMSVHASKGLEFEHLFVIGLEEGFFPLLGDS 577

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL YV +TRA   L +
Sbjct: 578 N-------------------------------------DIEEERRLAYVAITRAKRTLTL 600

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
              ++     K  +      + ++    +   + + +     +      +
Sbjct: 601 SFAASRFYRGKRERLDASRFIAEAGLVAKEPPREQSSGFSKGELIKHKLF 650


>gi|154509660|ref|ZP_02045302.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799294|gb|EDN81714.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC
           17982]
          Length = 900

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 119/830 (14%), Positives = 222/830 (26%), Gaps = 156/830 (18%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
                    ++  NK  +   E     +   A+ +  ++              +  L+  
Sbjct: 130 RARAGEILAITFTNKAAAEMRERAGALVGDDARRMWVSTFHSACVRLLRYEHEAAGLSSS 189

Query: 78  FTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKIRDRFNTYKMFKSTL---ASLT 128
           FT      +Q + +      +        K         ++       +  T        
Sbjct: 190 FTIYDAQDSQRLIQMVLKAMDVDIKRFTPKMVAARISDAKNELIGPARYAETAGKDPVSR 249

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +       Y++  + +  LDF+DLI+ T DLL++  +   I     +   HIL+DE QDT
Sbjct: 250 IVADAYVEYDKRMRASNALDFDDLIMRTVDLLRENPL---IAEHYHRRFRHILVDEYQDT 306

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ ++R+L  D   G      P  L  VGD  QSIY+F GA  + +   +R      
Sbjct: 307 NHAQYVLVRALVGDGKDGV----EPAELTVVGDSDQSIYAFRGATIRNIEEFERDF---- 358

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I L  ++RST +IL+  + V +     +  +  +                 
Sbjct: 359 ----TGARTILLEQNYRSTQNILSAANAVIARNTGRRAKNLWTA---------------- 398

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                              S      +L    S    AR +   I  +  +         
Sbjct: 399 -------------------SGDGALITLDAADSEHDEARFVVGEIDRLADSG-------- 431

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             ++  DI V  R    +         L     I           +   IKD +A  + I
Sbjct: 432 --VEWGDIAVFYRTNAQSR----ALEELLVRQGIPYRVVGGTRFYERREIKDALAYLQVI 485

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN------------- 475
            + +D ++   +L  P           I          +    +                
Sbjct: 486 SNPDDTVAARRVLNVPKRGIGAKAEEAIAAHAAHYGISFGAALRHLWLRAGCPAGEGEGI 545

Query: 476 ----------------------------CGISKFQHVIKYIHELI-HIAQFCSPHDFFTL 506
                                                   I  L    A+  S  D    
Sbjct: 546 DVDALARSTSPDEASADSSAPEVLGITPRAAKSAAAFWGLIETLRAAEARGASQADILEE 605

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIK 562
           +L       +       +    ++ L E  +       ++    L + +  +     + +
Sbjct: 606 VLDRTGYLAELRRSEDPQDASRVENLAELHSVAGAFAADAPGGTLADFLERVALVADSDQ 665

Query: 563 RAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                    +V +MTVHTAKGLE PVVF+       F H+                    
Sbjct: 666 VPAEGERGGQVTLMTVHTAKGLEFPVVFVTGMEDGTFPHQRSLGDESELEEERRL----- 720

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                                         YV +TRA + L + + +  S      +   
Sbjct: 721 -----------------------------AYVAITRAREHLYLTRAAVRSAWGTPQEMPP 751

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              + D       +++   +    +  +     S  +   +      +  +         
Sbjct: 752 SRFLDDIPAELLDLRRAATSGERMRASYGGSYGSGSYGSGSYGRSRRSEGRDPWGDTDTG 811

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII-HKLL 790
              S       +P  +   T          +      +   G  I H  L
Sbjct: 812 AFGSGRGGASAQPAGVRKVTRMGVAPAAKPAEDKPVLSLKVGDRIKHATL 861


>gi|167816120|ref|ZP_02447800.1| putative helicase [Burkholderia pseudomallei 91]
          Length = 703

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 107/662 (16%), Positives = 205/662 (30%), Gaps = 159/662 (24%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
             A    S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVAGKAGSSLASFANLIAKMRAETARMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQE----------------------------------------- 549
           E +N            L                                           
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPANLADPAQNP 559

Query: 550 -----LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                L   L             A  + V++MTVH AKGLE   VF+      +F H++ 
Sbjct: 560 DAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFPHENS 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              L+    EE  RL+YV +TRA ++L 
Sbjct: 620 ----------------------------------ALESDGLEEERRLMYVAITRAKERLY 645

Query: 664 IC 665
           + 
Sbjct: 646 LS 647


>gi|157412666|ref|YP_001483532.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9215]
 gi|157387241|gb|ABV49946.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9215]
          Length = 802

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 100/569 (17%), Positives = 190/569 (33%), Gaps = 96/569 (16%)

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSL-TEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
           +R    +   HIL+DE QDT+  Q+E+I+ +   +    K  +   R++F VGD  QSIY
Sbjct: 245 VRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWQDRSIFVVGDADQSIY 304

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF  A+ + ++  +   +    +   K S+I+L  ++RS+++IL   + +          
Sbjct: 305 SFRAADFRILIGFQEDFKTLIND-DTKSSLIKLEENYRSSSNILDAANSLIENNSERIDK 363

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              +T                                +  +  S  D + +       A 
Sbjct: 364 VLKATK----------------------------EKGELLTLLSCDDEISE-------AE 388

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I ++        N   +    K+  +L R R  + +I          ++I     
Sbjct: 389 AITNKIKSL--------NHYNQNPIWKNFAILYRTRAQSRVIEESL----VRWRIPYTIF 436

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                 D   IKD++A  + +++  D++S + ++  P     +  I K+          +
Sbjct: 437 GGLRFYDRREIKDVIAYLKVLVNSSDNVSLLRIINVPRRGIGKTTIQKLNELSNRLNIPL 496

Query: 467 YEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E +    +                + +++L+   +   P     LIL         +S 
Sbjct: 497 WEVLNDKQSLEETVGRSSKGINKFTEIMNDLLCYLENSGPAQLLQLILEKSGYLSDLLSS 556

Query: 521 FGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMT 576
              E  D    L E +N   + E+ + S   ++   L     T        + N V +MT
Sbjct: 557 GTEESEDRRNNLQELINAATQYEEETESG--DVEGFLSTAALTTDNDTKKNDPNSVTLMT 614

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE   VF+      +F          +                           
Sbjct: 615 LHNSKGLEFQNVFITGLEQGLFPSHRSIDTPSL--------------------------- 647

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                   EE  RL YVG+TRA +++ +             + T   +       D    
Sbjct: 648 -------LEEERRLCYVGITRAKERIFLSHARERRLWGGMREATIPSIFLSEIPEDLMDG 700

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLE 725
           ++  T   +       +  T    N   E
Sbjct: 701 ELPQTGGASIRRDWHLDRLTRVDRNNQNE 729


>gi|328542978|ref|YP_004303087.1| DNA helicase II protein [Polymorphum gilvum SL003B-26A1]
 gi|326412724|gb|ADZ69787.1| DNA helicase II protein [Polymorphum gilvum SL003B-26A1]
          Length = 812

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 103/548 (18%), Positives = 175/548 (31%), Gaps = 112/548 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y++        DF DL+++   L K       +     +    +L+DE QDT++
Sbjct: 213 RKLYAEYQDRLSVLNAADFGDLLLHVITLFKTHPD---VLADYQRRFRFMLVDEYQDTNI 269

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L +              +  VGD+ QSIY + GAE   +LR +         
Sbjct: 270 AQYLWLRLLAQ----------GNPNICCVGDDDQSIYGWRGAEVDNILRFEHDF------ 313

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++I L  ++RST+ IL     + +  E   G +  +                   
Sbjct: 314 --AGATVIRLERNYRSTSHILAAASHLIAHNEGRLGKTLFT------------------- 352

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                   D+    +     S +DS  +       AR I   I  +              
Sbjct: 353 -------DDADPEAEPVCVASAWDSEEE-------ARSIGDEIEALQARGHSLDQ----- 393

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                I +LVR              L     ++          + + I+D MA  R I  
Sbjct: 394 -----IAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERMEIRDAMAYFRCIAQ 444

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  ++ +P     E  +  +    R E   + +        ++           
Sbjct: 445 PADDLAFERIVNTPKRGLGEATLKIVHELARAERIPLMQAAAQLCLTEEIKPKARKALAD 504

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           ++                +   ++L      + + +    E    LD         E+  
Sbjct: 505 LLAAFERWRAQLGAMKHTELAEIVLDESGYTEMWRADRSAEAPGRLDNLKELVRSMEE-- 562

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               + L   LE     + R ++     V IMT+H+AKGLE   VFL      +F H+  
Sbjct: 563 ---FESLAGFLEHIALVMDRDNAEAGEAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQR- 618

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                           +    ++  EE  RL YVG+TRA  +  
Sbjct: 619 -------------------------------ALDESGRAGLEEERRLAYVGITRARKRAK 647

Query: 664 ICKHSNTS 671
           I   SN  
Sbjct: 648 IWFASNRR 655


>gi|144575164|gb|AAZ43952.2| atp-dependent helicase [Mycoplasma synoviae 53]
          Length = 734

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/637 (16%), Positives = 211/637 (33%), Gaps = 114/637 (17%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----DLKEKLKKSQD 105
           AQ L++          F +L       K    +++  +           ++ + +  +++
Sbjct: 100 AQVLRKYINLIGFSRNFPILDEL---DKKQVLQDLYVKNKITNHEVSYSNMAKYISWAKN 156

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
             +  +D     +   S  A       +   Y     +   LDF+DLI++   LL+    
Sbjct: 157 NLLDQKDLIAELEKQFSGDAVSKTIANVYQDYLNYMAEKGALDFDDLILHCKTLLEMHP- 215

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +  KI +  N+IL+DE QDTS +Q++++  + +              L  VGD  Q+
Sbjct: 216 --NVAAKIARYFNYILVDEFQDTSDLQFDILEKIID----------KSSQLTIVGDPDQT 263

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY++ GA    +L  + I +            I L  ++RST  IL   +K+    +N  
Sbjct: 264 IYNWRGASVDLILNFENIFENS--------KTIVLDTNYRSTKKILASANKLIKNNKNRF 315

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                                             +        +   F++  +       
Sbjct: 316 SKDLI----------------------------TNNDEGNDIEFYHAFNTEAE------- 340

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A+ +   I  +               Q K+I++L R    +               I+  
Sbjct: 341 AQWVISKIKLLKKQKH----------QIKNIVILYRSNYYSRAFEDAL----LGEGINYK 386

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464
             + +       IKD++A  + IL+ +D ++   ++  P+       + KI         
Sbjct: 387 IFNGYKFYQRTEIKDVLAFLKTILN-KDSIALKRIINVPVRGIGPKTVEKIEAFAEKNKI 445

Query: 465 TVYEYIQKFANC-------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
           ++Y+ +              + K    IK + +   I++          +L      +Q 
Sbjct: 446 SLYDALFTHFKELPLGKEIILKKIYPFIKILRKYQLISEKYPLPVITQKLLEELNYLEQI 505

Query: 518 ISRFGN--EVIDVLDEFLNFTLR--NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                     I+ + E ++ +++   E N  ++  + ++++     T         + V 
Sbjct: 506 KGNQNENQNAIENVKELISVSMKNYFETNKEATAIDYLNQVSLLSTT--GEDVEGDDFVS 563

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE   VF+V     VF +                       +         
Sbjct: 564 LMTIHASKGLEFDNVFIVGLTEGVFPN----------------------YKHLEDAKENK 601

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              K       EE  RL YV +TRA   L +     +
Sbjct: 602 HKTKTELNKGIEEERRLAYVAITRARKNLFVSDSRGS 638


>gi|71894555|ref|YP_278663.1| ATP-dependent helicase [Mycoplasma synoviae 53]
          Length = 726

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/637 (16%), Positives = 211/637 (33%), Gaps = 114/637 (17%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP----DLKEKLKKSQD 105
           AQ L++          F +L       K    +++  +           ++ + +  +++
Sbjct: 92  AQVLRKYINLIGFSRNFPILDEL---DKKQVLQDLYVKNKITNHEVSYSNMAKYISWAKN 148

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
             +  +D     +   S  A       +   Y     +   LDF+DLI++   LL+    
Sbjct: 149 NLLDQKDLIAELEKQFSGDAVSKTIANVYQDYLNYMAEKGALDFDDLILHCKTLLEMHP- 207

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +  KI +  N+IL+DE QDTS +Q++++  + +              L  VGD  Q+
Sbjct: 208 --NVAAKIARYFNYILVDEFQDTSDLQFDILEKIID----------KSSQLTIVGDPDQT 255

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY++ GA    +L  + I +            I L  ++RST  IL   +K+    +N  
Sbjct: 256 IYNWRGASVDLILNFENIFENS--------KTIVLDTNYRSTKKILASANKLIKNNKNRF 307

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                                             +        +   F++  +       
Sbjct: 308 SKDLI----------------------------TNNDEGNDIEFYHAFNTEAE------- 332

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A+ +   I  +               Q K+I++L R    +               I+  
Sbjct: 333 AQWVISKIKLLKKQKH----------QIKNIVILYRSNYYSRAFEDAL----LGEGINYK 378

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464
             + +       IKD++A  + IL+ +D ++   ++  P+       + KI         
Sbjct: 379 IFNGYKFYQRTEIKDVLAFLKTILN-KDSIALKRIINVPVRGIGPKTVEKIEAFAEKNKI 437

Query: 465 TVYEYIQKFANC-------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
           ++Y+ +              + K    IK + +   I++          +L      +Q 
Sbjct: 438 SLYDALFTHFKELPLGKEIILKKIYPFIKILRKYQLISEKYPLPVITQKLLEELNYLEQI 497

Query: 518 ISRFGN--EVIDVLDEFLNFTLR--NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                     I+ + E ++ +++   E N  ++  + ++++     T         + V 
Sbjct: 498 KGNQNENQNAIENVKELISVSMKNYFETNKEATAIDYLNQVSLLSTT--GEDVEGDDFVS 555

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE   VF+V     VF +                       +         
Sbjct: 556 LMTIHASKGLEFDNVFIVGLTEGVFPN----------------------YKHLEDAKENK 593

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              K       EE  RL YV +TRA   L +     +
Sbjct: 594 HKTKTELNKGIEEERRLAYVAITRARKNLFVSDSRGS 630


>gi|212696888|ref|ZP_03305016.1| hypothetical protein ANHYDRO_01451 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676178|gb|EEB35785.1| hypothetical protein ANHYDRO_01451 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1021

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 141/812 (17%), Positives = 269/812 (33%), Gaps = 114/812 (14%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLL------SSFFLTQKFTPQKNIITQEINKKSPDLKE 98
             L     L++       ++            + F   K  P +++  +       D   
Sbjct: 243 EDLSYFYNLKKYVTEDEWDDSLEKFDYNLKAKTRFNKNKDDPNEDLFVKTKRNYYKDQFI 302

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +LK        I   F   K  +       L       Y+  K++   LDF D+      
Sbjct: 303 ELKNIVVNTDSITKAFFDPKEEEVLAELKNLVFEFEKIYKNKKREENYLDFSDMEHEFIK 362

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL+  D    +  K+ ++  +I  DE QD++ IQ  ++  L            +   LF 
Sbjct: 363 LLENDD----LVEKLQKQFKYIFFDEYQDSNDIQNYIVDKL-----------KNKNNLFF 407

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD KQSIY F  A P+  L +    +K           I L  +FR+  D++   + +F
Sbjct: 408 VGDVKQSIYGFRNARPELFLEKLESYEKD-----SDSVRINLSKNFRTDKDLIDFNNYIF 462

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                 +  S+ +     HR +                  +       ++  +  +    
Sbjct: 463 DRLMTKKN-SDIAYKDDNHRLNYH------------FEFDEKYPKVSIKALNASINEE-- 507

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                     +   I ++I +           +  KDI +L+R      LI    +    
Sbjct: 508 --------EYLIKEIDDLINSG----------MSYKDIAILLRSSSKAYLIENELK---- 545

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I    +   I  + + +   + + ++I + +DD + + +L+S +F+FSED++  I  
Sbjct: 546 KAGIPFSSDISKISFETVEVNFFINILKYIANPKDDFTLLSVLRSEIFDFSEDELSLISL 605

Query: 459 QRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
              +    E    Y + F +    K         +  +I  F + +DF  +I        
Sbjct: 606 SSDKKFFYEKFSLYEENFDDELSQKISDFNTNFADFSYILNFSNMYDFANIIFEKSGYYD 665

Query: 516 QFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSAN 568
              +R  G E +  ++ F+      ++N+ +SL   ++ ++      +      R  S  
Sbjct: 666 FLKARDRGYERVQNIEAFIELMDDYDKNNENSLFGFLTYIDNLKNQKKDNLKASRNLSDE 725

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + VRIMT+H +KGLE   V L +      +    K M +   L     I  W  + K  
Sbjct: 726 EDLVRIMTIHKSKGLEFKAVILPEASKGFNTRGKSKDMLLDKDLGIGINISDWDNKIKIS 785

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           +     +++ L  + ++E  R+LYV +TRA  +L I    + + +      +   ++  S
Sbjct: 786 SIKRDLILEKLNLNDKKEEMRVLYVALTRAERKLSIIGQKDLNEKGLDKIISSDSILDLS 845

Query: 689 FHNDERVK--------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK-- 738
            + D  +K           +      D +        + E   L  E     + D     
Sbjct: 846 SYMDWILKILLEDKIMADFIDLDYKTDNFRNGAVKIDYIEEFKLNSELNFTDVKDMIDGK 905

Query: 739 ---------IPKKLFSPIKNDINEPYILNPSTIDTKGK---------------------- 767
                    I +      +N  N    L  S  +                          
Sbjct: 906 NYDEKIYKNIKEIFSYSYENLENTNKSLKKSVTEIAKNYDLSNNGYEKSSFDDVEISHDF 965

Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                         +G +IHK+ Q +      
Sbjct: 966 RRPNFDQISLSPTQKGTLIHKIFQELEFKEYD 997


>gi|300727037|ref|ZP_07060456.1| ATP-dependent DNA helicase PcrA [Prevotella bryantii B14]
 gi|299775581|gb|EFI72172.1| ATP-dependent DNA helicase PcrA [Prevotella bryantii B14]
          Length = 784

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 97/590 (16%), Positives = 168/590 (28%), Gaps = 122/590 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               +   Y++  +    +DF+DL++ T  L +  +    +R K       IL+DE QDT
Sbjct: 176 AISQIYTTYQQRCQNANAMDFDDLLVLTYILFRDHED---VRRKYADHFRFILVDEYQDT 232

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q  +I  LT++             +  VGD+ QSIY F GA    +L+  ++     
Sbjct: 233 NYAQQCIILQLTKE----------NPHVCVVGDDYQSIYGFRGANIDNILKFSKLYAN-- 280

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   + +L  ++RST  I++  + +    E            I          G  
Sbjct: 281 ------AQLFKLEQNYRSTQHIVSAANSLMKKNE----------RQIPKDVFSTNAEGEK 324

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
              +   S  +                          A  +   I  ++  D        
Sbjct: 325 LTLKPAYSDKE-------------------------EAMIVCKDIKRIMAADH------- 352

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              Q  D  +L R    +       R       I               IKD++A  R I
Sbjct: 353 --AQYCDFAILYRTNSQSRSFEEEMR----KQDIPYRIFGGLSFYQRKEIKDIIAYFRLI 406

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ-------KFANCGISK 480
            +  D+ +F  ++  P        + KI    R    + ++ I              ++K
Sbjct: 407 ANPNDEEAFKRIINYPSRGIGNTTLAKIAEVARKYGVSFWDVICSPTQFGLNVNKGTLNK 466

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
                  I   I         +    I+          S    E     + L+EFL+   
Sbjct: 467 LDVFRALITSFIEKMPKVDAFELGQEIIKVSGITADIYSSREPEALSRQENLEEFLSGMQ 526

Query: 538 RN-------EQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                     +     L + + ++                + V +MT+H+AKGLE   VF
Sbjct: 527 DFVEGRREEGREDEIFLSDFLQDVALMSDLDSDSNGEDEQSRVSLMTIHSAKGLEFSTVF 586

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +V     +F                                                   
Sbjct: 587 IVGLEENIFPSPMAVSSARELEEERRLL-------------------------------- 614

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             YV +TRA    I+    N     K    T    + D       V+  +
Sbjct: 615 --YVAITRAEKHCILTCARNRWRYGKMEYDTPSRFLRDIDPALLNVESER 662


>gi|293391274|ref|ZP_06635608.1| ATP-dependent DNA helicase Rep [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951808|gb|EFE01927.1| ATP-dependent DNA helicase Rep [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 671

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 110/650 (16%), Positives = 218/650 (33%), Gaps = 124/650 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +    + +    L+E + +  +    +        + +          +   
Sbjct: 112 DQMALLKELTADVLQEDKGVLRELINRISNWKNDLCSPQQALGLARDNKE--QTFAHCYD 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  +    LDF+DLI+    L K+    A +R K  ++I ++L+DE QDT+  Q+E+
Sbjct: 170 RYNKQLRAYNALDFDDLIMLPTLLFKQN---AEVRLKWQEKIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I+ L  +                VGD+ QSIYS+ GA P+ ++R +              
Sbjct: 227 IKLLVGE----------RARFTVVGDDDQSIYSWRGARPQNMVRLRDDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + +    E+       S      +                 
Sbjct: 269 RVIKLEQNYRSSQRILHCANILIDNNEHVFDKKLFSNLGEGEKL---------------- 312

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                               + +  +    A R+   +  +I    I           +D
Sbjct: 313 -------------------QIIEAKNEEHEAERV---VEELIAHRFIG------KAHYRD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L+  +        +I    +          IKD+MA  R +++Q+DD 
Sbjct: 345 YAILYRGNHQSRLLEKIL----MQNRIPYKISGGTSFFSRTEIKDMMAYLRLVVNQDDDA 400

Query: 436 SFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYI 488
           +F+ ++ +P        + K+ +  + +  +++E I  F              Q   ++I
Sbjct: 401 AFLRIVNTPKREIGTATLEKLGSLAQEKHISLFEAIFDFELLQRVTPKAYDALQKFARWI 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN---- 539
            EL    Q   P      +L +    +       +          +    ++        
Sbjct: 461 VELNDEIQRSEPERAVRSMLSSLHYEEYLYEYATSPKAAEMQSKNVATLFDWVAGMLKGD 520

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E N   +L ++++ L       +     + ++V++MT+H +KGLE P VFL+     +  
Sbjct: 521 EFNEPMNLNQIVTRLTLRDMLERGEEENDGDQVQLMTLHASKGLEFPHVFLIGMEEGILP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 581 HQTSID-----------------------------------EDNVEEERRLAYVGITRAQ 605

Query: 660 DQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             L   +CK      E    + + + +            K  L+    + 
Sbjct: 606 QNLWFSLCKERRQFGELIRPEPSRFLLELPENDLQWERDKPPLSAEQQQA 655


>gi|194334487|ref|YP_002016347.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
 gi|194312305|gb|ACF46700.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
          Length = 743

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 99/552 (17%), Positives = 186/552 (33%), Gaps = 118/552 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y    K+N  LDF+DL+I   +L  +      +  ++     +ILIDE QDT+
Sbjct: 170 AAKVYEVYTRKLKENNALDFDDLLIKPLELFVESP---QLLEQLQDYFRYILIDEYQDTN 226

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ V + L           S  R +F VGD+ QSIYS+ GA+   +L  ++       
Sbjct: 227 RAQYLVAKQLA----------SKHRNIFVVGDDAQSIYSWRGADITNILNFQQDYP---- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 S+ +L  ++RST  IL   + +             S  +     +         
Sbjct: 273 ----DSSVFKLVENYRSTQTILKAANGIIRKNRRQIEKELVSHKSTGEPLT--------- 319

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                     L +  +    A ++   I ++            +
Sbjct: 320 --------------------------LIESFNEKREADKVGEYIRSL---------KLSK 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + +D  V  R    + ++  + R     +++               IKD +A  RFIL
Sbjct: 345 DYEYRDFAVFYRTNAQSRVLEDVLR----LHRLPYRIFGSVSFYKRKEIKDAIAYLRFIL 400

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN-----CGISKFQH 483
           +  D+ S + ++  P     +  I K+         ++Y  I+  A        ++    
Sbjct: 401 NDHDNESLLRVINFPPRKIGDVSINKLRDFAESRNLSLYGAIRHAAEGGFQARLLNALNA 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
               I +L  I++  S +D    +           +    E +   + L E L+      
Sbjct: 461 FSSIIEQLKEISREGSVYDVLNSLYELTGIPLLLRAENTPEAMARYENLQELLSMARDFS 520

Query: 541 --QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 + L + ++++     +       + N V +MTVH AKGLE PVVF+     ++F
Sbjct: 521 DHHQGANGLNDFMNDIALATDSD--EIQESDNYVSLMTVHAAKGLEFPVVFITGLEEKLF 578

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              + ++  +                                           YV +TRA
Sbjct: 579 PLNYYEQEELEEERRL------------------------------------FYVALTRA 602

Query: 659 SDQLIICKHSNT 670
            ++L +    + 
Sbjct: 603 QEKLYLSWSKSR 614


>gi|207091890|ref|ZP_03239677.1| DNA helicase II (uvrD) [Helicobacter pylori HPKX_438_AG0C1]
          Length = 681

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 95/572 (16%), Positives = 180/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    I  +  +  ++I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLFLSLKILQDNET---IAKETSERYHYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------CTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHIKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKVLLKKGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICT-------QRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I +          E   +  +  K              
Sbjct: 388 RFFIKRVLNKPPRGLGKITQEWIFSLLDDEGLNLEEALKLGAFKGKLNPKNEHALNKFTA 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F    L      + +       E    + E L+    + + + +
Sbjct: 448 MIGRLRE-AFEISVERFCARFLEETNLLKSYEKEDNYEEREGFVKELLSLVKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +         + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDTHN--TENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQLLQQDKTP 619


>gi|310766136|gb|ADP11086.1| DNA helicase II [Erwinia sp. Ejp617]
          Length = 720

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 91/530 (17%), Positives = 174/530 (32%), Gaps = 82/530 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRMLAGD----------TGKVIIVGDDDQSIYGWRGAQVENIQRFLQDFPA----- 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 274 ---AETIRLEQNYRSTNNILKAANTLIANNNGRLGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  +    F+ L +       AR +   I   +              
Sbjct: 310 -------TEDSDGEPIAIYCAFNELDE-------ARFVVNRIKVWMENGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R I ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQTSMPYRIYGGMRFFERQEIKDSLAYLRLISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++        +  A    S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQSARERQLTLWQTARALLQEKALAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L         H     ++        +    G +    I+ L+E +N T +   
Sbjct: 462 TELVDSLAQETSDMPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H AKGLE   VF+V     +F 
Sbjct: 522 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTMHAAKGLEFMQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +   +                    +      ++  +   K      +R
Sbjct: 582 SQMSLEEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSR 631


>gi|260435507|ref|ZP_05789477.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109]
 gi|260413381|gb|EEX06677.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109]
          Length = 794

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 105/630 (16%), Positives = 206/630 (32%), Gaps = 99/630 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y +A   N      D        ++    +  +R    +   H+L+DE QD
Sbjct: 202 KLTADVYRRYRKALAANNA---LDFDDLLLLPVQLLQQNEQVRSYWHRRFRHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++I+ L  D    ++    + R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYDLIKLLVTDGQEPQDYDDWAGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +A +   + ++++L  ++RSTA IL   + + S            T              
Sbjct: 319 QAPDEATR-TMVKLEKNYRSTATILEAANALISHNSERIDKVLLPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  S T   D + +       A  + + +  M          
Sbjct: 365 ---------------GEGELISLTRCDDEIAE-------AEAVVHRLRTM--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ VL R    +  I          + I  +        D   IKDL+A  R
Sbjct: 395 ANPELSWGDMAVLYRTNAQSRAIEESL----VRWGIPYIVVGGLRFYDRREIKDLLAYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  I ++    ++    ++      E ++        
Sbjct: 451 LLINPADTVSLLRVINVPKRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAK 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                   +++L   +   +P +    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCDLVNDLQLRSHEVTPSELIQQVMEKSGYVSELIADGTDEAEERRRNLQELVNAA 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N    L+  ++          +      + V +MT+H++KGLE PVV LV    
Sbjct: 571 LQYQEENEEGDLEGFLASAALASDADSKD--TAADRVTLMTLHSSKGLEFPVVCLVGLEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +             I  +  +        E  
Sbjct: 655 TRAKERLFLSHVSERRLWGGMREAAVPSVFLSELPEALVQGDIPQSCGVALRRERRLERL 714

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFS 745
           T    + PL       +       P + + 
Sbjct: 715 TRVDRDKPLSAPANAVRRRQAGPAPGRSWQ 744


>gi|91228869|ref|ZP_01262773.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 12G01]
 gi|269965552|ref|ZP_06179667.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 40B]
 gi|91187581|gb|EAS73909.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 12G01]
 gi|269829831|gb|EEZ84065.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 40B]
          Length = 671

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/660 (14%), Positives = 219/660 (33%), Gaps = 125/660 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L++ L    +    +          +       L  +   
Sbjct: 112 DQLALLKELTEKQLDGDKDLLRQLLSCISNWKNDMLTPEQAKARAQGEQQ--QLFAFCFD 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI+    LL+  +    +R +    I ++L+DE QDT+  Q+E+
Sbjct: 170 MYQKQMKAYNALDFDDLILMPVLLLRNHED---VRQRWQNRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 227 VKLIVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + ++       +           A R+         T  + ++      + KD
Sbjct: 308 -------DGEKLKVLLAKN-------EEHEAERV---------TGELIAHKFLNRTEYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----MQNRVPYKISGGTSFFARAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +   +++
Sbjct: 401 AFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFESSFEMGLEQHLTGRGLENLRRFTQWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLR----- 538
             +   A+     +    ++                +     +  + +  ++ +      
Sbjct: 461 VAIADQAERGDTVEAVRSLVRDIHYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 -NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +Q    +L+E++  L       +     + + V++MT+H +KGLE P V+L+ +   +
Sbjct: 521 NYDQEE-KTLKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHASKGLEFPYVYLIGSEEGI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H+                                       +   EE  RL+YVG+TR
Sbjct: 580 LPHQTSID-----------------------------------EDNVEEERRLMYVGITR 604

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L            +  + T    + +   +D   +  K   S  +          +
Sbjct: 605 AQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEVNKKPVSAEERMAKGQAHIAN 664


>gi|307611686|emb|CBX01379.1| ATP-dependent DNA helicase rep [Legionella pneumophila 130b]
          Length = 665

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/684 (15%), Positives = 223/684 (32%), Gaps = 140/684 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + NE    +     P    +   +  + +L +       + +   L+        E+   
Sbjct: 58  AANEMRARVSA-FLPAASRRGLKVATFHTLGLSI-IKRDVSRCD-LKPGFSIFDSEDCLQ 114

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-- 125
           +L  F            + +  +      ++ + K Q +    ++     ++        
Sbjct: 115 ILRGFL----------PVNKATD------RDFILKVQQQISLWKNNLLNPELILQNPPET 158

Query: 126 -SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                A  +   Y++A K    +DF+DLI    DLL +    A +      +I H+L+DE
Sbjct: 159 LLCDEALTIYPRYQDALKAYNAVDFDDLIRLPVDLLNEH---ADVLEYWQNKIRHLLVDE 215

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD++  Q+ +++ L                   VGD+ QSIY++ GA+P+ + + ++  
Sbjct: 216 YQDSNTSQYLLVKKLAG----------VRAHFTVVGDDDQSIYAWRGAKPENLAQLQKDF 265

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +          II+L  ++RST+ IL   + + +  ++       S             
Sbjct: 266 PR--------LKIIKLEQNYRSTSRILHAANHLIAHNQHLFEKKLWSDL----------- 306

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            G  +L   V  + +                          A  +   I+++I       
Sbjct: 307 -GHGELLRVVSCKDEQD-----------------------EAEHV---IADLISHKLRNR 339

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                     D  +L R      +   + R     + I    +        L ++D+ A 
Sbjct: 340 TK------YSDYAILYRGNHQARIFEKVLR----HHGIPYHISGGQSWFAKLEVRDIFAY 389

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF------ANCG 477
            + + ++ DD +F+  + +P     E  +  +    +    ++Y            A+  
Sbjct: 390 LKLLCNEADDAAFLRAITTPKRGIGESSLDALGRYAQSRGISLYHGSDHLALSEFVADKQ 449

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-----IDVLDEF 532
              F     ++ ++       S  +    ++           +  +       +D + E 
Sbjct: 450 RMIFHDFKLWMEDIKKRISSDSVLEHLRQMVEDIGYEAYIYEQCDSPAKAQKKMDNVWEL 509

Query: 533 LNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           L +  R        SL +++++L       +    ++ + V++MT+H +KGLE P ++LV
Sbjct: 510 LEWVNRLLNKEPEQSLMDVVNKLILIDILEQSD-ESSSDVVQLMTLHASKGLEFPFIYLV 568

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      +     EE  RL 
Sbjct: 569 GMEEELLPH-----------------------------------RVSIDDDQIEEERRLA 593

Query: 652 YVGMTRASDQLIICKHSNTSNEKK 675
           YVG+TRA   L            +
Sbjct: 594 YVGITRAQKGLCFTLAKQRRRAGE 617


>gi|331005810|ref|ZP_08329167.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC1989]
 gi|330420371|gb|EGG94680.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC1989]
          Length = 674

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 104/598 (17%), Positives = 194/598 (32%), Gaps = 125/598 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   + A Y EA K    +DF+DLI+              +  +  + I ++L+DE QD
Sbjct: 163 QLIALVYARYSEALKAYNAVDFDDLILQPVQYFITHPE---LLLRWQKRIRYLLVDEYQD 219

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +I+ L  +            +L  VGD+ QSIY++ GA P+ +   +      
Sbjct: 220 TNTSQYRLIQLLMGN----------RGSLTVVGDDDQSIYAWRGARPENMSLLQEDFP-- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST  IL   + +     +    +                   
Sbjct: 268 ------SLKVIKLEQNYRSTQRILKAANTLIDHNPHEFTKA------------------- 302

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW ++                     + + ++    A R+A  I          S   
Sbjct: 303 --LWSEMSYGE--------------PIRILRATNEETEAERVATEI---------VSQRL 337

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +R  + +D  VL R      LI    +     Y++    +          IKD+MA  R 
Sbjct: 338 QRRAKYQDFAVLYRSNHQARLIELKLQ----HYQVPYQMSGGTSFFARTEIKDVMAYLRL 393

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           I++  D+ + +  + +P        I  +          +++ + +       +N    +
Sbjct: 394 IVNPADNNALLRTINTPRRQIGTSTIITLSQYANERDIGLFDAMAEVGLAQHLSNSAYQR 453

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNF 535
            Q    +I  +I   +   P      +L                    + ++ +   +  
Sbjct: 454 IQQFHGWISHIIEQTESAEPIATLQEMLEDMDYLGWLHQHASSPQVAEKRMENVQFLIRS 513

Query: 536 TLR-NEQNSYSSLQELISE--------LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                E+ +  +L E  +         L       ++      + V++MT+H AKGLE P
Sbjct: 514 IKDTLERENEETLTETSTYTLKEAIAKLVLMDLLERQEEEGMEDRVQLMTLHAAKGLEYP 573

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +  H                                      ++    EE
Sbjct: 574 HVFMVGVEEDILPH-----------------------------------RNSIEDDNIEE 598

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             RL YVG+TRA   L I   +      +SN  T    + +   +D         +  
Sbjct: 599 ERRLAYVGITRAKRTLTISLAARRKQFGESNPTTPSRFLDELPQDDLERSGFGQEDPA 656


>gi|221218096|ref|ZP_03589562.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 72a]
 gi|221192044|gb|EEE18265.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 72a]
          Length = 659

 Score =  265 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 188/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGANYNNMLQFEKDY-------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS+ +IL V + V    +N +  +  S+                    
Sbjct: 264 -NVKEIKLEQNYRSSKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +   +   S        
Sbjct: 308 -------------VIDVFIFEDEIQES-------EFVANQIIELSRLEDFKSKK------ 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 342 ---IGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 394

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +                     
Sbjct: 395 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDITFSFTNISSYDKALNKQV 454

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 455 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 514

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L               N  + +MTVH+AKGLE   V
Sbjct: 515 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEEAENININLMTVHSAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 575 FFIAVEDNIIPHHR---------------------------------IIEDSEVDLEEER 601

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D L+I   +    +++   +     + 
Sbjct: 602 RVFYVALTRAKDSLVITMANKRKKDRQIFDQLPSRFIS 639


>gi|300870871|ref|YP_003785742.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000]
 gi|300688570|gb|ADK31241.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000]
          Length = 660

 Score =  265 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 95/597 (15%), Positives = 181/597 (30%), Gaps = 125/597 (20%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +AK +   Y+   K    +DF DLI  T DL         +  K  +   +I++DE 
Sbjct: 156 LEKIAKRVYEVYQNYLKGYNAVDFNDLINLTIDLYINFPD---VLDKYQERFKYIMVDEY 212

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+L Q+++   L   +          + +  VGD+ QSIY+F GA+   +L  +    
Sbjct: 213 QDTNLAQYKLTSLLASKY----------KNIVVVGDDDQSIYAFRGADVSNILSFENEYP 262

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +          II L  ++RST  IL     V S     +     +              
Sbjct: 263 E--------AKIITLNKNYRSTKAILEAAHAVISNNTQRKAKEVVAVNDEG--------- 305

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               +   ++   D +                        A+ IA  I            
Sbjct: 306 ----IPPVIMPCEDERD----------------------EAQFIAENI---------TQT 330

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              + +  ++  +L R    + +     RF      I       F   +   IKD++A  
Sbjct: 331 AINKNLNYENFAILFRMNSQSRIFEEALRF----RGIPYTVVGAFQFYERKEIKDILAYL 386

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-------TVYEYIQKFANCGI 478
              ++ ED++S + ++  P        I  +     +           YE I        
Sbjct: 387 NLFVNPEDEVSLLRVINIPKRGIGAVAINNLNEISIKNGVSLYQTLLDYENIDDIPPKAK 446

Query: 479 SKFQHVIKYIHELIHI-------AQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVI 526
           +  +  +  IH    I        +    ++     L       + ++       G++ I
Sbjct: 447 TGIKDFLDIIHYYNEIFTVDKNTLEKPKLYENINKFLDTIAYHNEVLNSSDTKEQGSKKI 506

Query: 527 DVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           + ++  +N     E+ +  ++L+  +  +                 V +M++H AKGLE 
Sbjct: 507 ENIESLMNGIAEYEKGNKNATLKNYLDRILLMSIEENNEEEKKKG-VMLMSIHAAKGLEF 565

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           P V++      +  H        +                                    
Sbjct: 566 PYVYICGMEDGILPHHKSSSEREIEEERR------------------------------- 594

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
               L YV MTRA   L +        + +  + T    + +          +    
Sbjct: 595 ----LCYVAMTRAKKHLTLTYCMKRKKQGRDVECTPSIFLEEMRKGLPEDMAMDEEE 647


>gi|282877529|ref|ZP_06286347.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
 gi|281300353|gb|EFA92704.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
          Length = 1082

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 140/884 (15%), Positives = 287/884 (32%), Gaps = 98/884 (11%)

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
              L +    +     +  +T+   +K   L     +  +       R     +   T   
Sbjct: 281  DKLFNATAQKAAEAPEEWLTK-TKQKDEGLMMLATELTNLLNTTEQRRRQLLVPFRTATL 339

Query: 127  -------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQE 176
                   L L   +     E    +       L+ +T  LL    +   S +I  KI  +
Sbjct: 340  ILRHLNQLRLLGSIENKVRELNADSNSF----LLSDTQLLLNKLIEDSDSPFIFEKIGTQ 395

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            + HI+IDE QDTS IQW+  + L ++     +          VGD KQSIY F   + + 
Sbjct: 396  LKHIMIDEFQDTSTIQWQNFKILLKEVISHADGTG-----LIVGDVKQSIYRFRSGDWRL 450

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +   ++    +    G     ++L ++ RS  +I+   +  FS                 
Sbjct: 451  LNNIEQEFPSQ----GHLLETLKLDVNRRSEKNIIDFNNTFFS-----------IVARKE 495

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQ-CNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            + +         +  ++       +  + +  +  +     P+E   +++   IA TIS 
Sbjct: 496  YEALATDNPEEAEQVKKAYEDVCQKAPDEKTRTGFANIKLFPKEDYDNLMVTEIAQTIST 555

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            ++             ++ KDI +LVR  K+ P I         +  I +V ++ F L   
Sbjct: 556  LMEQG----------VRQKDIAILVRNNKEIPTIADSLMETMPE--IRLVSDEAFRLDSS 603

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            +A+  L+     ++  ED ++   + K        + +        +   ++   +   +
Sbjct: 604  IAVNLLIDALHCLMHPEDKIALANLSKVYQKRILNNQL--------DDNDLFIQWKDVTD 655

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                +F      +  L        P D    +         F      +    + EF + 
Sbjct: 656  WLPKEFTQQADSLLTL-------PPIDLVERLF------AIFQLDTLKDQSAYICEFYDL 702

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
              +   ++ + L   + +        K   S   + +RI+T+H +KGLE   V +     
Sbjct: 703  LNQYLTDNITGLDNFLEQW-HETLHDKTIQSDGFDGIRILTIHKSKGLEFDHVIIPFCDW 761

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            Q+     +            P IPI   +    N       +H       +   LLYV +
Sbjct: 762  QLEKRYTLWCRTDAEPFCQLPLIPIDFSEKSMTNTFFEPDYQHEHLQNMVDNLNLLYVAL 821

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA   L I     ++  +        + +  +         +   N     E+      
Sbjct: 822  TRAGKSLFILGQRKSAGRRSKVIEESVEEMQQALSGSILTGDMDNKNDTISLEFG----- 876

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                      ++ET +   +  ++P K         +       S    +  +  E    
Sbjct: 877  -----TLSTPKDETKRASENIFQLPVKTLKIGIESFDNMVEFRQSNQSKEFVSQDEEQDD 931

Query: 776  DN-QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA-KEYKNLLLSITRLLE 833
                    G I+H+L   I           +      +  L+      + L   + + L 
Sbjct: 932  RQSSYIQLGNILHQLFSQI---KTADDAEAVLKQLEFDGVLYDDVVTREKLQEMLNKRLN 988

Query: 834  NPMMTTAMSCDSY--SEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
            +P + +  S      +E S+        +  +++ R D++    Q + + ++K     PQ
Sbjct: 989  HPKVASWFSGKWKLFNECSILHVNPTTGE--VMTHRPDRVMTDGQQMIVVDFKFGKPKPQ 1046

Query: 892  EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             I+        Q+  Y ++L     +  +   L YV   K+  +
Sbjct: 1047 HID--------QVKQYMQLLTQM-GHAHVTGYLWYVYSNKIEEV 1081


>gi|329924069|ref|ZP_08279332.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5]
 gi|328940908|gb|EGG37216.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5]
          Length = 1376

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 127/840 (15%), Positives = 258/840 (30%), Gaps = 119/840 (14%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEE 64
             + I  D           + +  +++M+ G PT         L+   +L +A  T   E 
Sbjct: 225  VQSILADARLALNGAAGLLQQAKAIAMQPGGPTPYADNLDEDLRMVASLLEAIDTSPWES 284

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI-------KIRDRFNTY 117
             + +       +  + +K+ +  E+ ++  +L++ +KK  +E                 +
Sbjct: 285  LYGIFREASFGKLKSVRKDEVLPELQEQVKELRDNVKKIVNELKNALFGRPASEFLRELH 344

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD------VSAWIRY 171
                  +            Y EAK    ++DF DL      +L+  D      + +    
Sbjct: 345  TAAPLMMELSETVIAFGERYREAKAAKGMVDFNDLEHYCLHILRHPDSVPGHMMPSDAAM 404

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            +  ++ + +L+DE QDT+ +Q +++R ++ +          P   F VGD KQSIY F  
Sbjct: 405  EYREQFDEVLLDEYQDTNSVQEDIVRLISREM---------PGNRFMVGDVKQSIYRFRL 455

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PENAQGLSE 289
            AEP   L + +      T   Q    I+L  +FRS  +++  V+ +F     E+   ++ 
Sbjct: 456  AEPGLFLDKYKTFSS-GTGTSQTGIRIDLARNFRSRMEVVDAVNLLFRQIMNESVAEIAY 514

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVV-----------SQHDSQCNPQQESWTSYFDSLPQ 338
            D    +   +S   +         +             +  S  +  +E          +
Sbjct: 515  DERAELVCGASFPERETNGGANPYMPEMLLIDRAGKGPEEQSDESASEEDGVQLEAEALE 574

Query: 339  ESSASILARRIAYTISNMIGTD------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
              +A + AR IA  I  M G                R     D+++L+R      +   L
Sbjct: 575  METAQLEARAIARKIREMTGESGKPLMVYDKGLKTMRPAGYGDMVILLRS---AMVWATL 631

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                     I   G           ++ +++L + I +   D+    +L+SP+   SE++
Sbjct: 632  IIEELRQEGIPAFGEQNKGYFQATEVEIILSLLQVIDNPRQDIPLASVLRSPILGLSEEE 691

Query: 453  IFKICTQRH--------------------------------------------------- 461
            + ++                                                        
Sbjct: 692  MAQVRLCAKGTYYDALKAAVSLSVAPPVMDSARPRDFVDGKWTPGAGLEGLAEAAAGHEL 751

Query: 462  -ETETVYEYIQKFANCGISKFQHVIKYIHELIHI-------AQFCSPHDFFTLILGAKKG 513
                 + +         I     +   +   +         A+  S  D    I      
Sbjct: 752  VAGSHLSDAPLTAEGHAIEISAELGAKLGLFMDRLQRWRQEARQGSLSDLIWGIYSETGY 811

Query: 514  RQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQ-----YPPTIKRAHS 566
                     G +    L    +  ++ EQ++    L   ++ + +               
Sbjct: 812  LDWVGGLPGGKQRQGNLTALYDRAVQYEQDTASRGLFRFLTFISRLRERGGDLGTAGGTE 871

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +  N VR+MT+H +KGLE PVVF+                 +   L   P       +  
Sbjct: 872  SQGNAVRLMTIHKSKGLEFPVVFVAGLSKNFNQQDLNAPFLMHKELGFGPKFVDEGMRVS 931

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                    + +  +     E  R+LYV +TR  +++I+        +K S          
Sbjct: 932  YPTLPNLAIRRRSQLELLAEEMRVLYVALTRPKEKMILVGTVKDLPKKVSAWAQADFNPE 991

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                +    +     + I               +    E   +     D  +    + +P
Sbjct: 992  LLLPDYVLARGRSYLDWIGPAVIRHPSAGPLRGQAGLPEETSSRALAADRSQWIFSIETP 1051



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 77/269 (28%), Gaps = 45/269 (16%)

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-----TIDT 764
                W+  +   + +  + ++ ++     +       +  +         S     +   
Sbjct: 1110 QRLSWNYRYEAVSQISAKTSVTEMKKLLALQDSPSLDLLEERAVKRQSRESIDASTSFTL 1169

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL-------PEHKRKNFITSYCTKNAKLWP 817
              +       +      RG + H ++Q +          P  + +  I  Y  +   +  
Sbjct: 1170 SLRRPKFMESTKLTPAERGTVYHTIMQHLPLQRLEDAAEPTAEIEETI-RYLVEKEIITG 1228

Query: 818  AKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINC------------------- 857
             +        I+ L +  +    + + D + E+  S  +                     
Sbjct: 1229 EQASAVEAAEISSLFDCDLGKRVLSAEDVWREMPFSYALPAAEAYQGLAFLDPISEHSAQ 1288

Query: 858  --------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVP--QEIEHIPYTHIAQLSIY 907
                      + ++I G +D +      + + +YKT   +     +  +   +  QL +Y
Sbjct: 1289 GLPEMELLRDETVLIQGVVDCMFRHNGRLVLLDYKTDRVLEHRGGLTALADQYRFQLDLY 1348

Query: 908  EKILKDSYPNKSL-VCLLIYVSEPKVFII 935
             K L+D    + +    L +        +
Sbjct: 1349 AKALEDIL-GEPVHEKWLYFFDGGHAVQV 1376


>gi|220913223|ref|YP_002488532.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
 gi|219860101|gb|ACL40443.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
          Length = 1167

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 129/1064 (12%), Positives = 253/1064 (23%), Gaps = 208/1064 (19%)

Query: 39   METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI--NKKSPDL 96
            +  G    +      Q       + E +      F   K T  K +I       +   + 
Sbjct: 157  LRLGVERDVVLLGGAQAWQLATEVVEAYDGEYGHFRAAKSTLVKAVIQLAGECAEHLQEP 216

Query: 97   KEKLKKSQDEFIKIRDRF----------NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +E                                   L +      +   Y +AK+    
Sbjct: 217  EEVEAWLMARLADYEASPYLAGKQKNPPQAAADIARLLRTRASVADMVGRYTDAKRARGA 276

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            LDF DL+     + +   ++A   +   Q    +L+DE QDTS  Q  +   L       
Sbjct: 277  LDFGDLVSLAARVARDVPLAA---HMERQRYKVVLLDEFQDTSHAQLVLFSRLFG----- 328

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA-----TNAGQKFSIIELP 261
                     + AVGD  QSIY F GA   ++    R    R      +          L 
Sbjct: 329  -----GGHAVTAVGDPNQSIYGFRGASAGQLFHFVREFPVRTGPAEGSAQWMPAPTSYLT 383

Query: 262  LSFRSTADILTVVD---KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             ++R+   IL   +   +  +  E  +G +  + T              V+    +    
Sbjct: 384  TAWRNGKSILAAANVMSESLAKAEAQRGPAGGAATAAATVPPLQPSPFAVEGRVVLGRFA 443

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                     +                           +    T F         A  + V
Sbjct: 444  SDAEEAAALADDV------------------------LKYRVTDFETKPDGSSVAPALAV 479

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            L R+R          R       I+        L     + DL+A  R +       + +
Sbjct: 480  LCRRRAQM----ETIRRQFEARGIAYEVVGLGGLLVTPEVVDLVATLRVLADPGRSDALM 535

Query: 439  CMLKSPLFNFSEDDIFKICTQR-------------------------------------- 460
             +L    +     D+  +                                          
Sbjct: 536  RLLAGARWRIGPADLMALRDWSSHLARRRGQLSAGPEGDEAGDDDGTVPESDLTDGASLV 595

Query: 461  ------HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF--CSPHDFFTLILGAKK 512
                            +        +   +   + +L         +        +    
Sbjct: 596  EALDWLPREGWTSSAGRCLTEVARGRLHRLSVELRQLRGYLGDDLTTLLGEVERAMLLDI 655

Query: 513  GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIK----RAHSA 567
                      ++    LD F +      + S+   +   +S LE                
Sbjct: 656  EVAALPGVSIHQARRNLDAFQDAAAGFLRTSHRVDILAFLSWLEAAAAEENGLEAPPGDV 715

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDDPGIPIW 621
            N   V+++TVH +KGLE   VF+    +  F      +          P   D   +P W
Sbjct: 716  NREAVQLLTVHASKGLEWDAVFVPGLNAGAFPTDKDSRWSSGTAALPWPLRGDRSDLPQW 775

Query: 622  IPQSKSRNNIVSD---LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                  +   +         ++   + E  RL YV  TRA   L +   +   +    + 
Sbjct: 776  DLDQPDQKGWIDAEKDFKAAVQAHGESEERRLAYVAYTRAKHVLWVSSAAWVGSRSGRST 835

Query: 679  RTWYDMVYDSFHNDER--------------------------------VKKIKLTNSINK 706
             + +    ++                                           L   ++ 
Sbjct: 836  MSPFLAELETLAAPAAGSPARAGVHPLSLDEAALPENSPLTLETEVAGWPYDPLEGPVDP 895

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK------------------ 748
                    S     +     E  + +L       +    P K                  
Sbjct: 896  RSGERLRLSGGRRASMEAAAERVLAELAKGPADFRTRQDPAKSPGFAGPAAGWAREAALL 955

Query: 749  ----------NDINEPYILNPSTIDTKGKTN--------LESLLSDNQTFNRGLIIHKLL 790
                       D++ P  ++ ST+    +                   +  +G   H  +
Sbjct: 956  LLRRSRRSQGQDVHLPTHISASTLVDLEEDPAAVLARLRRPVPREPGMSARKGTAFHAWV 1015

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
            +           +       ++       +    L ++                  +   
Sbjct: 1016 E-------DYFGSAGMLDLGEDPGSDDHIDAAYDLDAMVETFRASEWAH------RAPAY 1062

Query: 851  VSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
            V   +     D+++ GRID +       + + ++KT          +      QL+ Y  
Sbjct: 1063 VEVPVETRVGDVVVRGRIDAVFRDADGRWDLVDWKTGRRPSG--ARLKTR-AVQLAAYRL 1119

Query: 910  ILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                    P +S+     YV++ +V              I    
Sbjct: 1120 AWARLKDVPLESVRAAFFYVADNEVVRPHDLGTAVELEAIVAAA 1163


>gi|78778691|ref|YP_396803.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str. MIT
           9312]
 gi|78712190|gb|ABB49367.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus
           str. MIT 9312]
          Length = 802

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/571 (17%), Positives = 190/571 (33%), Gaps = 96/571 (16%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL-TEDFFVGKNTHSSPRTLFAVGDEKQS 225
             +R    +   HIL+DE QDT+  Q+E+I+ +   +    K  +   R++F VGD  QS
Sbjct: 243 DMVRDYWHKRFKHILVDEYQDTNRTQYELIKLITAGNTEPKKFFNWEDRSIFVVGDADQS 302

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IYSF  A+ + ++  +   +    +   K S+I+L  ++RS+++IL   + +        
Sbjct: 303 IYSFRAADFRILIGFQEDFKTSIND-DTKSSLIKLEENYRSSSNILDAANSLIENNSERI 361

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                +T                                +  +  S  D + +       
Sbjct: 362 DKVLKATK----------------------------EKGELLTLLSCDDEISE------- 386

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  I   I ++        N   +    K+  +L R R  + ++          ++I   
Sbjct: 387 AEAITNKIKSL--------NNYNQNPIWKNFAILYRTRAQSRVLEESL----VRWRIPYT 434

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464
                   D   IKD +A  + +++  D++S + ++  P     +  I K+         
Sbjct: 435 IFGGLRFYDRREIKDAIAYLKVLVNSSDNVSLLRIINVPRRGIGKTTIQKLNELSNRLNI 494

Query: 465 TVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            ++E +    +                + +++L+   +   P     LIL         +
Sbjct: 495 PLWEVLNDKQSLEETIGRSSKGINKFTEVMNDLLCYLENSGPAQLLQLILEKSGYLSDLL 554

Query: 519 SRFGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRI 574
           S    E  D    L E +N   + E+ + S   ++   L     T        N N V +
Sbjct: 555 SNGTEESEDRRNNLQELINAATQYEEETESG--DVEGFLSTAALTTDNDTKKNNPNSVTL 612

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H +KGLE   VF+      +F          +                         
Sbjct: 613 MTLHNSKGLEFQNVFITGLEQGLFPSHRSIDTPSL------------------------- 647

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                     EE  RL YVG+TRA +++ +             + T   +       D  
Sbjct: 648 ---------LEEERRLCYVGITRAKERVFLSHARERRLWGGMREATIPSIFLSEIPEDLM 698

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
             ++  T   +       E  T    N P E
Sbjct: 699 DGELPQTGGASIRRDWHLERLTRVDRNNPNE 729


>gi|148259238|ref|YP_001233365.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|326402391|ref|YP_004282472.1| DNA helicase II [Acidiphilium multivorum AIU301]
 gi|146400919|gb|ABQ29446.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum JF-5]
 gi|325049252|dbj|BAJ79590.1| DNA helicase II [Acidiphilium multivorum AIU301]
          Length = 728

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 126/759 (16%), Positives = 236/759 (31%), Gaps = 140/759 (18%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF--- 72
           + +  +P     V+  NK      E  +  + + A+ L   +            +     
Sbjct: 46  LTRRAFPNQVLAVTFTNKAAREMRERVSALLGEPAEGLWLGTFHALAARMLRRHAELVGR 105

Query: 73  ---FLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLAS-- 126
              F       Q  ++ Q +  +  D+K    +       + +DR          L    
Sbjct: 106 TSNFSILDPDDQLRLLKQVMEARRMDVKRFTPQGLMGTIQRWKDRGLLPDQVPRELDIDW 165

Query: 127 -LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               A+ L A Y+E  +    +DF DL++   DLLK+      I  +  +   +IL+DE 
Sbjct: 166 GAESARDLYAAYQERLQALNAMDFGDLLMLATDLLKREPE---ILAQYHRRFRYILVDEY 222

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+L+Q+  +R L +          + + +  VGD+ QSIYS+ GAE + +LR ++   
Sbjct: 223 QDTNLVQYYWLRLLAQ----------ASKNICCVGDDDQSIYSWRGAEIENILRFEQDFP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I+ L  ++RSTA IL     + +  E   G +  +              
Sbjct: 273 --------GAKIVRLEANYRSTAPILRAASALIAHNEGRLGKTLHAGR------------ 312

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                         +    ++    +++DS  +        R +A  I  +         
Sbjct: 313 --------------NDAEGEKVEVLAFWDSDEES-------RAVASRIEGLRADGH---- 347

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +  +  VLVR    T               +           +   I+D +A  
Sbjct: 348 ------KLAECAVLVRAGFQTRGFEERF----ITIGLPYRIVGGLRFYERAEIRDAIAYL 397

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK---- 480
           R +    DDL+F  ++ +P     +  +  +    R +   + E   +    G  +    
Sbjct: 398 RLLAQPADDLAFERIVNTPKRGLGDTALRTLHERARADGVPLAEAASRVVAEGGLRGKAR 457

Query: 481 --FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNF 535
              + ++    E     +        + +L A      +  +   E     + L E +  
Sbjct: 458 DGLRTLLAQFAEWRETLRLDGHVVALSTLLDASGYIAMWQEQKTPEAAGRIENLKELVRA 517

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               E             LE     +   +  + ++V +MT+H AKGLE   VFL     
Sbjct: 518 VAEFETLGG--------FLEHVALVMDNDNEPDDDKVVLMTLHAAKGLEFDTVFLPGWEE 569

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            VF ++                                  +        EE  RL YVG+
Sbjct: 570 GVFPNQR--------------------------------ALDEGGGRALEEERRLAYVGI 597

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA  + II   +N              +  +   +       +L     +    A    
Sbjct: 598 TRAKQRAIISHCANRR------------IYANWQSSVPSRFIEELPEDAIRTGGSAALEQ 645

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            + P      R     +    +       +P     +  
Sbjct: 646 RNAPPVFATARPLVAARRASGEHADAWAATPRPPRTDRI 684


>gi|331699083|ref|YP_004335322.1| ATP-dependent DNA helicase PcrA [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953772|gb|AEA27469.1| ATP-dependent DNA helicase PcrA [Pseudonocardia dioxanivorans
           CB1190]
          Length = 800

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 108/791 (13%), Positives = 216/791 (27%), Gaps = 166/791 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  W L    V                 + ++   L            
Sbjct: 47  GAGSGKTRVLTHRIAWLLAERHVHPGEIMSITFTNKAAAEMKERVDALVGRRANAMWVST 106

Query: 66  FSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  +    L ++      +      + +     +    +  + +  K   R    ++   
Sbjct: 107 FHSMCVRILRREAKHLGVRSAFSVYDADDSRRLVGIVARDLELDPKKFSARGLAAQISNL 166

Query: 123 TLASLTL--------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L+                  +   Y+   ++    DF+DLI+ T  LL +      
Sbjct: 167 KNELLSADDATERAGNDFERRVAEVYVGYQSRLRQANAFDFDDLIMETVSLLAR---LPA 223

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     +   H+L+DE QDT+  Q+E++R L E    G      P  L  VGD  QSIY+
Sbjct: 224 VAEYYRRRFRHVLVDEYQDTNKAQYELVRQLVEPASPGA----EPAELCVVGDSDQSIYA 279

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F GA  + ++  ++               I L  ++RST  IL+  + V +   N +   
Sbjct: 280 FRGASIRNIVEFEQDFPN--------ARTILLEQNYRSTQTILSAANAVIARNANRRDKR 331

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                             Q + ++       +   +       A  
Sbjct: 332 LWS----------------------------DQGDGEKVVGYVADNEHDE-------ASF 356

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I  ++ +            +  D+ V  R    + +   +         +      
Sbjct: 357 VAGEIDRLVDSGE---------FRNCDVAVFYRTNAQSRVFEDVF----LRVGLPYKVVG 403

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                +   I+D +A  R + + ED +S   +L  P     +     +        T + 
Sbjct: 404 GVRFYERREIRDALAYLRVLSNPEDTVSLRRILNVPKRGIGDRAESLVAEYAERHRTSFS 463

Query: 469 YIQKFANCGISKF-----------QHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQ 516
              + A     +                + + +L  +        +    + G      +
Sbjct: 464 RALRIAAEQPEELPALATRSQRNIAEFQRMLDDLRELVDRGDDTAEILEAVYGRTGYVAE 523

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNEQNS------------------------------ 543
             +    +    ++ L E +        ++                              
Sbjct: 524 LEASDDPQDGSRLENLAELVTVAREFAGDAAVADLLDGGASDPDGTVIGSGETALDTDDT 583

Query: 544 ------YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                   SL   +  +             +   V +MT+HTAKGLE PVVFL      V
Sbjct: 584 NAGAPAPGSLAAFLERVALVADADSIPDD-DSGMVTLMTLHTAKGLEFPVVFLTGWEDGV 642

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H                                         +   E  RL YVG+TR
Sbjct: 643 FPHMRALGDP----------------------------------AELAEERRLAYVGITR 668

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L + +    +   + +       + +        ++ +            +     
Sbjct: 669 AQQRLYLSRAIVRTAFGQPSVNPASRFLDEVPAELVDWRREETRRPAAPVGRFGFGRRPG 728

Query: 718 HPENTPLEREE 728
             +       E
Sbjct: 729 ATDRGDWRVPE 739


>gi|283476681|emb|CAY72510.1| DNA helicase II [Erwinia pyrifoliae DSM 12163]
          Length = 723

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/530 (17%), Positives = 175/530 (33%), Gaps = 82/530 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 175 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 232 QYAWIRMLAGD----------TGKVIIVGDDDQSIYGWRGAQVENIQRFLQDFPA----- 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 277 ---AETIRLEQNYRSTNNILKAANTLIANNNGRLGK---------------------ELW 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  +    F+ L +       AR +   I   +              
Sbjct: 313 -------TEDSDGEPIAIYCAFNELDE-------ARFVVNRIKVWMEKGGAL-------- 350

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R I ++
Sbjct: 351 --NDCAILYRSNAQSRVLEEAL----LQTSMPYRIYGGMRFFERQEIKDSLAYLRLISNR 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++        +  A    S  Q  
Sbjct: 405 NDDAAFERVVNTPTRGIGDRTLDVVRQTARERQLTLWQTARALLQEKALAGRAASALQRF 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L H       H     ++        +    G +    I+ L+E +N T +   
Sbjct: 465 TELVDSLAHETSDMPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSY 524

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H AKGLE   VF+V     +F 
Sbjct: 525 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTMHAAKGLEFMQVFIVGMEEGMFP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +   +                    +      ++  +   K      +R
Sbjct: 585 SQMSLEEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSR 634


>gi|145596260|ref|YP_001160557.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145305597|gb|ABP56179.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 1144

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 148/1051 (14%), Positives = 279/1051 (26%), Gaps = 201/1051 (19%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK-----NIITQEINKKSPDLKEK 99
            T        + A++      R+ L+     T      +     + +T  +   + +L E 
Sbjct: 142  TEHGLRAGYEPATRLLTEASRWQLVDLIVRTYDGDMSEVDRMPSTVTDAVLALAGELDEH 201

Query: 100  LKKSQDEFIKIRDRFNTY------KMFKSTLASLTLAK------YLNAHYEEAKKKNCVL 147
            L    D       RF         +++     +LTLA+       L   Y   K+    +
Sbjct: 202  LV-EPDHLSAWTGRFFADVQSRPGRVYADVRRALTLAQVRLKLLPLVRAYARRKEDFEAM 260

Query: 148  DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            DF D +     + +   V   I          +L+DE QDTS  Q  ++ +L        
Sbjct: 261  DFADQLARAARVARDHPVVGEI---ERDRYRVVLLDEYQDTSHAQVVLLNALFG------ 311

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                    + AVGD  QSIY + GA    + R +    +     G    +  L  S+R+ 
Sbjct: 312  ----GGHPVTAVGDPCQSIYGWRGASAGTLDRFRTEFAQ---TDGAPAQVRTLTTSWRNR 364

Query: 268  ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             +IL V + + +    A                       V      +S  +   +    
Sbjct: 365  PEILGVANALATPLRAAGA--------------------RVPELRAALSVKEPIPHRTPR 404

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ---AKDILVLVRKRK 384
             + +        S+ +  A  IA ++                 +         VLVR R 
Sbjct: 405  GFAAGTVHCALLSTYADEADWIADSLLRAWQGAAGTPGVMPEHLPVVARPTTAVLVRLRS 464

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
              P I    R       + V       L D   ++D++   R +    D  + + +L   
Sbjct: 465  QIPAIESALRA----RGLPVDVVGLGGLLDTPEVRDVVCTLRVLADPTDGAALLRLLTGA 520

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQ----------------------------KFANC 476
             +     D+  +  +          +                              ++  
Sbjct: 521  RWRIGPRDLVALHRRARAIAAARRQLAADDEPEIVPDVLDEATLVEALADLGPAPAYSAE 580

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-------VIDVL 529
            G ++ +   + +  L +     S  D    +        +   R G +           L
Sbjct: 581  GYARLRAAAQELGLLRYRLDQ-SLPDLIADVERTIGLDVEVAVRAGRDGAGDAGLARGHL 639

Query: 530  DEFLNFTLRNE-QNSYSSLQELISELEQYPPTI----KRAHSANHNEVRIMTVHTAKGLE 584
            D   +   R   +   ++L   ++ L                     V+++T H AKGLE
Sbjct: 640  DALGDVAARFSGETPGATLSAFLAYLAAAEDEERGLAPGEVEVVEGAVQVLTAHAAKGLE 699

Query: 585  SPVVFLVDTGSQVFSHKHIKK--------MHIMPSLNDDPGIPIWIPQSKSR----NNIV 632
              VV +      V+               +   P   D  G+P+               +
Sbjct: 700  WDVVAVAGLSRGVWPGPVRNSDHWLGGLGVLPFPLRGDADGLPVLALAEAEEQRGVAQAL 759

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY---------- 682
            +D     +   + E  RL YV +TR    L+   H      K+    +            
Sbjct: 760  ADFTAAWRAHDEREERRLAYVAVTRPRRLLLCSGHWWGEGTKRPRGPSALLRDVHQACLN 819

Query: 683  ----DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP------------------- 719
                 +V +             T  + + EW A       P                   
Sbjct: 820  GGAGQVVDEWAAEPAPDAVNPTTEVVLRAEWPADPLGARRPVLAEAATLVRRYLTDGVPT 879

Query: 720  -----------ENTPLEREETIKQLMDEQKIPKKLFSPI---------------KNDINE 753
                          P   +        +     +                      ++  
Sbjct: 880  RPASGGVTAAGPPVPGASDSVADDPGGDDPEVVRWRREADLLLAERAELTRQAGPIEVAL 939

Query: 754  PYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
            P  L+ + + T  +                 N    RG   H  L+  F        + +
Sbjct: 940  PAALSVTQLVTLRRDPAALARSLRRPLPTEPNPYARRGTAFHTWLEQRFGAGRLLDVDEL 999

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
                   A    A   + L     R L +            +   V          +++ 
Sbjct: 1000 P-----GAADADAAPDEALAELQERFLASEW-------ADRTPAEVEVPFATVIAGVVVR 1047

Query: 866  GRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK--SLVC 922
            GR+D +       F + ++KT                 QL++Y     +        +  
Sbjct: 1048 GRMDAVFGRPGGRFDVVDWKTGRQPTGAAAAAA---AVQLAVYRLAWAELAGVSVAQVGA 1104

Query: 923  LLIYVSEPKVFIIPQNKLNKA-FAEISTKIP 952
               YV +      P + L+ A    +   +P
Sbjct: 1105 AFHYVRDGMTVR-PVDLLDAAGLTALIASVP 1134


>gi|190895192|ref|YP_001985485.1| putative DNA helicase [Rhizobium etli CIAT 652]
 gi|190700853|gb|ACE94935.1| putative DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 1030

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 151/944 (15%), Positives = 293/944 (31%), Gaps = 104/944 (11%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
              +  DL  L  F    +    +   E    T   + + +   S       R +   S  
Sbjct: 171  ADLINDLEHLAAFYDETL--ANTAFPELWRLTQPPRIEAMLPRSIDLQPYRRMAAWKSVL 228

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
               +   + N  +    + +   +  +                                +
Sbjct: 229  GAAEGQRRGNEASARYEQVTAAYRTMIGSIAQRL---------------VHELAATLSEV 273

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
               Y+  K+   VLDF+DL++    L+ +      IR  +    +H+L+DE QDT  +Q 
Sbjct: 274  IDAYDLRKRDAAVLDFDDLLLQARLLVCEH---TEIREWLAWRYSHLLVDEFQDTDPLQA 330

Query: 194  EVIRSLT--EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            E++  +         +     P  LF VGD KQ+IY F GA+ +     K +  K     
Sbjct: 331  EILFFIAATAPPTRWEQAQLRPGALFLVGDPKQAIYRFRGADIEAYAVAKSVIAKSTNGC 390

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                       +FRS A++L  V++VF                     ++ GQ G V L 
Sbjct: 391  LLAV-----TANFRSRAEVLEHVNEVFQEV-----------------LAQPGQPGFVALT 428

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              +           + +     D   +E   +            +       ++G +R +
Sbjct: 429  ATMSPPPLPFPAAAKLTIDVPRDVRAEEQREAEAEAVAQLCARLIGALTITRADGTERRL 488

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +A DI +L     D              ++ISV       L     ++DL+AL R +   
Sbjct: 489  RAGDIALLAPTHTDLWRYERALEE----HRISVASQAGNALFRRQELQDLLALVRTLADP 544

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQ---RHETETVYEYIQKFANCGISKFQHVIKYI 488
             D L+F  +++ P+   S++++  I        +    ++      +   S  + V+  +
Sbjct: 545  LDTLAFGALMRGPVVGLSDEELLDITAALKPDADGRRRFQLRTVAGDVVHSLAREVLVKL 604

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQNSYS 545
              L  +A   +P       +     R    +R G      +  LD  +            
Sbjct: 605  QGLQRLAAELTPMQLLAYAIERLNLRVVMAARHGQRNARALANLDAIVELARPYGVAGLR 664

Query: 546  SLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            +   +L    E+     +     + + V I+T+H+AKGLE PVV  V++ ++        
Sbjct: 665  AFALDLQRGWERKRRHPEGRVDVSGDAVEIVTMHSAKGLEWPVVITVNSSTRFKPQDQFV 724

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                  +        +           ++      +     +  RL YV MTRA D L+I
Sbjct: 725  YRQSDDT--------LHWIVGGIEPPDLAAARSEEEFREARQRERLWYVAMTRARDLLVI 776

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                           +            +R+ +++  + +   E    +   +   +   
Sbjct: 777  ---------PDLPGASSRSWSRVMDLGQKRLSELRT-DMLPASEVPNADVLVNEQTDAIF 826

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
              E        E  +  +      +   +        I T G+  +           RG 
Sbjct: 827  LAERERIDAASEPILWDRPSERDPDRSADTTDSFVVDITTDGQRIV------GAGALRGN 880

Query: 785  IIHKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS---ITRLLEN 834
            ++HKL++               +R   +           P +   + L       R L  
Sbjct: 881  VLHKLMEEFLNGELFDGEDEVIRRAAQLLDQLQAVVDDDPNERRPDPLEMGRTALRTLRM 940

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI-FIFEYKTHHHVPQEI 893
            P +          E+ +            ++GR D   I    I  + ++K+  +     
Sbjct: 941  PDLEP-FIERLVPEIPLWAAAP----PRYLAGRADAAWIDGDRIALVIDWKSDVNPDATA 995

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
                  H AQL  Y  +             ++Y+S   V  +  
Sbjct: 996  ---QGAHAAQLRDYLSVTGAE------RGAVVYMSAGHVSWVEP 1030


>gi|312148323|gb|ADQ30982.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi JD1]
          Length = 659

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/578 (17%), Positives = 189/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGANYNNMLQFEKDY-------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS+ +IL V + V    +N +  +  S+                    
Sbjct: 264 -NVKEIKLEQNYRSSKNILNVANSVILNNKNRKEKTLWSSKMCSK--------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +   +   S        
Sbjct: 308 -------------VIDVFIFEDEIQES-------EFVANQIIELSRLEDFKSKK------ 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 342 ---IGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 394

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +   A                 
Sbjct: 395 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDIAFSFTNISSYDKALNKQA 454

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 455 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 514

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L               N  + +MTVH+AKGLE   V
Sbjct: 515 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEEAENININLMTVHSAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 575 FFIAVEDNIIPHHR---------------------------------IIEDSEVDLEEER 601

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D L+I   +    +++   +     + 
Sbjct: 602 RVFYVALTRAKDSLVITMANKRKKDRQIFDQLPSRFIS 639


>gi|225549593|ref|ZP_03770559.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 118a]
 gi|225369870|gb|EEG99317.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 118a]
          Length = 659

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/578 (17%), Positives = 189/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGANYNNMLQFEKDY-------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS+ +IL V + V    +N +  +  S+                    
Sbjct: 264 -NVKEIKLEQNYRSSKNILNVANSVILNNKNRKEKTLWSSKMCSK--------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +   +   S        
Sbjct: 308 -------------VIDVFIFEDEIQES-------EFVANQIIELSRLEDFKSKK------ 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 342 ---IGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 394

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +   A                 
Sbjct: 395 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDIAFSFTNISSYDKALNKQV 454

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 455 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 514

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L               N  + +MTVH+AKGLE   V
Sbjct: 515 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEEAENININLMTVHSAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 575 FFIAVEDNIIPHHR---------------------------------IIEDSEVDLEEER 601

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D L+I   +    +++   +     + 
Sbjct: 602 RVFYVALTRAKDSLVITMANKRKKDRQIFDQLPSRFIS 639


>gi|254521548|ref|ZP_05133603.1| DNA helicase II [Stenotrophomonas sp. SKA14]
 gi|219719139|gb|EED37664.1| DNA helicase II [Stenotrophomonas sp. SKA14]
          Length = 730

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 106/641 (16%), Positives = 206/641 (32%), Gaps = 123/641 (19%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +   A L   +     Y+    +  ++DF +L++  ++LL+       +   
Sbjct: 154 RRPQHIQPEPNDAWLETMRQAYIEYQSRCDRAGLVDFAELLLRAHELLRDNPA---LLSH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  D             +F VGD+ Q+IY + GA
Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGD----------SGHVFVVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V    R               I L  ++RSTA+IL   + V +   +  G      
Sbjct: 261 KVENVQGFLRDFP--------GAQTIRLEQNYRSTANILGAANAVIAHNPDRIGK----- 307

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           + +     + ++ + +       AR I   
Sbjct: 308 ----------------QLW-------TDSGDGEPIDLYAAYNEMDE-------ARYIVER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 338 ARQWVRDGG----------SYTEVAVLYRSNAQSRALEEAL----LSEQVPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R +  +++E   
Sbjct: 384 FERAEIKDALAYLRLLSNRNDDAAFERAVNTPTRGIGDRTLDEVRREARAQGISLWEATM 443

Query: 472 ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  ++EL       +  +    +L   + R+ +        
Sbjct: 444 LVTQGSALAARARNALAGFLVLVNELQAQTLHMTLAERVDHVLARSQLREHWSKESRNAL 503

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYS------SLQELISELEQYPPTI-KRAHSANHNEVR 573
                 D LDE ++   R  + +         + EL++ L        +    A  + V+
Sbjct: 504 DSESRTDNLDELVSVASRFVRRADDIEEVGEDMDELVAFLAYAALEAGEGQAQAGEDGVQ 563

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE P+VFL      +F                                   
Sbjct: 564 LMTLHSAKGLEFPLVFLAGLEEGLFPS--------------------------------- 590

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                 +    EE  RL YVG+TRA  +L++    +     + N       + +      
Sbjct: 591 -ARSLEESGRLEEERRLAYVGITRARQKLVLSYAESRRIHGQDNYSLPSRFLREIPRELL 649

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              + K+  S       +        E  P++    +    
Sbjct: 650 HEVRPKVQVSRPASMGASRVMGHASIEAPPIKLGALVTHPK 690


>gi|94970649|ref|YP_592697.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Koribacter
            versatilis Ellin345]
 gi|94552699|gb|ABF42623.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Koribacter
            versatilis Ellin345]
          Length = 1135

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 126/854 (14%), Positives = 264/854 (30%), Gaps = 102/854 (11%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            D    L  +     K+         + +  A   +      H      +   +DF ++ +
Sbjct: 349  DYAGTLCAALSRVAKLPPPRYDDDQWNTLKALFRVLPLAVGHLRTVFAERGEVDFSEIAL 408

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
                 L +      +   +  +I H+L+DE QDTSL Q  ++  L + +           
Sbjct: 409  AAKAALGEEGHPTDLALHLGYKIQHLLVDEFQDTSLSQAVLLERLIQAWSPEMGA----- 463

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            T+F VGD  QSIY F  AE        R                 L  +FRS  +++T  
Sbjct: 464  TMFVVGDPMQSIYGFRQAEVTL---FTRSWNSGFAQM--PLEQARLTANFRSRPELVTWF 518

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            ++ F     A      +       ++R                       +         
Sbjct: 519  NQTFEHVLVADNEVTGAVKYAPSEAAR-----------------------EPSQNAGPGF 555

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                  +    A R+   +   +  D            AK I +LVR R     I    R
Sbjct: 556  HSVASKAFEEEAARVIEVLQQELKGD------------AKSIALLVRSRSHMAHIAPALR 603

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                   I+    +  +L +   ++DL A+ + +++  D  +++ +L+ P      +D++
Sbjct: 604  E----AGIAFRSKEIDVLGERQTVRDLHAMTKALVNLADRTAWLTVLRGPWSGLQLEDLW 659

Query: 455  KICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
             +C         E + E     ++         +  +   +      S       +  + 
Sbjct: 660  TLCKDGERKTVWELLRERRGMLSDRAQKVLARTMPALDAAVTQRGRTSLRALVESLWVSL 719

Query: 512  KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             G            +  ++ +L+   R E       + L  E+ +      R  +++   
Sbjct: 720  GGPAALGRTERKAKLRDVEAYLDLLQRVESCGEVDEKRLEQEISRL---YTRPDASSEIR 776

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP-----QSK 626
            V +MT+H AKGLE  VV L      + S            + ++  + +          K
Sbjct: 777  VEVMTIHGAKGLEFDVVILPGLNRWIRSEGGQLLNWRERIIGEERDLLLAPMDAVGTDRK 836

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
               +I + L     + + EE  RLLYV  TRA ++L +       N++         +  
Sbjct: 837  KEGSIANYLAMLGGECSAEETKRLLYVAATRAKERLHLVTTMPAENKEPERGSLLSLLPA 896

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
            + F    +V   +  +                        EE  +      ++      P
Sbjct: 897  EVFGRFLKVPTPEAED------------------------EEEQRTPNLSHRLVPDWQLP 932

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF-- 804
               +  +     P   D + + +    +  +     G + H+ LQ I             
Sbjct: 933  AAPEPLKFETRYPVAADVREREHTFERVQFDLP-RIGTVTHRFLQQIGDEGPGGWTEERI 991

Query: 805  ------ITSYCTKNAKLWPA--KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
                  I +   +         K  + +  ++   L +      +     +  S    + 
Sbjct: 992  AKTAPRIRALLLQQGIRSSELAKWEETVTRALRNTLAHDKGQWILKQRESA--SNEYGLT 1049

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKT----HHHVPQEIEHIPYTHIAQLSIYEKILK 912
                    S ++D+  +  +  ++ +YKT         + ++     +   L+ Y ++L+
Sbjct: 1050 SALDGPRRSIKVDRTFVEGEVRWLIDYKTSDQEGTVTEKYLQEQVDKYRDDLAHYARVLR 1109

Query: 913  DSYPNKSLVCLLIY 926
                 + +   L +
Sbjct: 1110 AMD-GREVKGGLYF 1122


>gi|320102499|ref|YP_004178090.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644]
 gi|319749781|gb|ADV61541.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644]
          Length = 1214

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 128/862 (14%), Positives = 269/862 (31%), Gaps = 82/862 (9%)

Query: 1    LKNRFGLSLNESYELI---YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57
            L  R  +  +   +      +D W + +  +  + ++   S ETG+P        L    
Sbjct: 233  LMRRLNVLADLQPDDFNPTARDNWLILHESMESLERFSHKS-ETGDPADSLNWNALGNVL 291

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                         +  +  K       I + +      +++++   Q++    RD     
Sbjct: 292  SRMR--------EAAKIGNKKGWANEEIKKRVKDVFEGIRKRILDFQEKLELARDSLQ-- 341

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +  + ++    LA      Y+  K++  VLD++DL+     LL +    + +  ++ + +
Sbjct: 342  EDAERSIRLARLAWKTVQEYQRIKREEGVLDYDDLLTTALVLLHQD---SRLAAQVARSV 398

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            + +L+DE QDT  +Q  ++ +        +        L  VGD KQSIY F  A+P+  
Sbjct: 399  DLVLVDEFQDTDPVQARLLEAF-------EQHAGEAFRLMLVGDPKQSIYRFRRAQPQVF 451

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
               +     +          + L  + RS  ++L V + +F        L E     + H
Sbjct: 452  QSFRNHFPDQG--------RMVLTGNNRSIPELLDVFNHLFE------ELLEGPEDALTH 497

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                    G++  +       +    P    W       P E +    AR +A  +   +
Sbjct: 498  GPVTP-PPGSLDQYRDRCRGSEPPPGPFTLLWAKVDPKTPVEQARRAEARVLATWLRTRL 556

Query: 358  GTDTIF-----SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                        N      +  D+++L+R   ++ +             + V        
Sbjct: 557  DNGWPIRSSKTPNAPVVWAKPDDVVLLLRTLNNSSIYEREL----VHVGLEVHIVGGAAF 612

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ- 471
                 + DL+ L   I    D  +    L+ P+F  ++  +  +        +  + ++ 
Sbjct: 613  FTQPEVLDLINLLAAIEDPADATALAATLRGPIFGLTDASLLAVTLVEPGNPSRRDLLRG 672

Query: 472  --------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FG 522
                       +   S  +     +     +       D    +L          ++  G
Sbjct: 673  FATGEPGDWLDDTQRSALRRARVLLERWRDLKDHLKVGDLMERVLFESGYEAALTAQPLG 732

Query: 523  NEVIDVLDEFLNFTLRNEQNSYS--SLQELISELEQYPPTIKRAH-----SANHNEVRIM 575
            +  +  + + +    R E       +L + ++ L        R             VR+M
Sbjct: 733  DRRVANVRKLIRQARRFEAGGGGRLTLADWVARLRADLRKPPREDQAVTGDEGSGRVRLM 792

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H AKGLE P+V L D    + S        I P L      P+    S+    I    
Sbjct: 793  TIHQAKGLEFPIVVLPDLDRGLVSCFQKNSYVIRPDLGLVVKPPVDREDSRDGLTIAKLA 852

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
             +   +    E  RL YV  TRA D L++    +   E  S       ++ + +      
Sbjct: 853  GEMESRDDHAEARRLFYVAATRARDALVLSAAYDPDEEPNSPA---MQLLAERYDCRTGQ 909

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             +  + N        A   +    E+ P     +             L + +  +     
Sbjct: 910  PRCGIANQKPTATVAAQVVNLPDQESNPTR---SPLARPPSSPPQVALVTRVVQEALSDA 966

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
              + +  D   +    + L                Q ++ L +   +  +      + K 
Sbjct: 967  GSSDAPTDALARNENPNTLDSLSA-----------QPMWLLTQEDVRLPLRVDLDPSNKP 1015

Query: 816  WPAKEYKNLLLSITRLLENPMM 837
                    +   +  +  +P  
Sbjct: 1016 DLDPIRALVDRLLRAVFADPEG 1037


>gi|312170748|emb|CBX79010.1| DNA helicase II [Erwinia amylovora ATCC BAA-2158]
          Length = 723

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/530 (17%), Positives = 174/530 (32%), Gaps = 82/530 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 175 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 232 QYAWIRMLAGD----------TGKVIIVGDDDQSIYGWRGAQVENIQRFLQDFPA----- 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 277 ---AETIRLEQNYRSTNNILKAANTLIANNNGRLGK---------------------ELW 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  +    F+ L +       AR +   I   +              
Sbjct: 313 -------TEDSDGEPIAIYCAFNELDE-------ARFVVNRIKVWMEKGGAL-------- 350

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R I ++
Sbjct: 351 --NDCAILYRSNAQSRVLEEAL----LQTSMPYRIYGGMRFFERQEIKDSLAYLRLISNR 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++        +  A    S  Q  
Sbjct: 405 NDDAAFERVVNTPTRGIGDRTLDVVRQTARERQLTLWQTARALLQEKALAGRAASALQRF 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L         H     ++        +    G +    I+ L+E +N T +   
Sbjct: 465 TELVDSLAQETSDMPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSY 524

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H AKGLE   VF+V     +F 
Sbjct: 525 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTMHAAKGLEFMQVFIVGMEEGMFP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +   +                    +      ++  +   K      +R
Sbjct: 585 SQMSLEEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSR 634


>gi|84388923|ref|ZP_00991131.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio splendidus 12B01]
 gi|84376987|gb|EAP93859.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio splendidus 12B01]
          Length = 1224

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 152/1010 (15%), Positives = 311/1010 (30%), Gaps = 162/1010 (16%)

Query: 12   SYELIYKDLWP-LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            S   +  D+   L    +    + +S  ++T +   L K + L+ A   +   +  +L+S
Sbjct: 205  SPASLLADVNRYLTGSPLKLTVEAMSGDLQTLHNQNLDKMKQLK-ALWCESEADFLALIS 263

Query: 71   SFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKS---------------QDEF 107
               + ++   +K++ T         + +       +KL+K                Q   
Sbjct: 264  GSDVNKRSYTKKSLPTWLEAVTAWAQSDTHDYQFPDKLEKFSQATLIEKTPKGTAPQHAV 323

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +  + F                 +      +AK++   L F+DL+          D  +
Sbjct: 324  FEAIEDFLNSPADLKAPLLAHAITHCRTMLAKAKQQKQWLSFDDLLTQ-LSASIDVDEQS 382

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             +  +I       +IDE QDT  +Q+ +   +  D        +    LF +GD KQ+IY
Sbjct: 383  LLVERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLD--------NPQCGLFMIGDPKQAIY 434

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F GA+    ++ +       T          L  ++RS+AD+++ V++VF   ++    
Sbjct: 435  GFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVSAVNQVFMNSDSPFIY 484

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW--TSYFDSLPQESSASIL 345
             +D        S    +   V          + +       W   +    LP+      +
Sbjct: 485  DQDIPFLPVAASPSADKRQWV---------MNGETQHALTFWLQDAEDKPLPKGEYHKAM 535

Query: 346  ARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
            A   A  I  ++           +  K+  + A DI VLVR   +  LI      L    
Sbjct: 536  AEATASQIQTILTASQNQQAYFDNGKKQHAVNAGDIAVLVRTGSEGRLIKN---ALSEQG 592

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
              SV  ++R  +   L  +D+  L + +L+ E+D +    L S LF      + ++    
Sbjct: 593  IASVYLSNRDSVFTSLVAQDIQRLLQAVLTPENDRALRASLASELFALDAASLDELNNDE 652

Query: 461  HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
               E V    +++    +   + V+  +  +I              +L  + G +     
Sbjct: 653  VVWENVVNEFREYRKLWLQ--RGVLPMLRSVISKRH------LAERLLEEENGERSLTDL 704

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRI 574
                    + E L    +   + Y  L+ L   +              +   +  N V+I
Sbjct: 705  M------HIGELLQQARQELDSDYGLLRWLAEAISDAQNGLGGNEDDIQRLESERNLVQI 758

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            +T+H +KGLE  +VFL    S                 ++          +         
Sbjct: 759  VTIHKSKGLEYELVFLPFVAS-------------YREASEGKFYDHDSDTTVLDITGSDS 805

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-----RTWYDMVYDSF 689
             +    K    E  RL+YV +TRA     I                        +V +  
Sbjct: 806  ALAQADKERLAEDLRLIYVALTRAVYGCFIGMAPLRKGRSTKEPTGVHLSAMGYLVQNGQ 865

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP--- 746
                      L+    K+  +    +    E   ++ E+    L   +       +    
Sbjct: 866  EQGIAELHQALSAIEGKNSSVLLSETPTAHEQVFVQAEQVSDDLQASELKASIDRAWRIT 925

Query: 747  ----------IKNDINEPYILNPSTIDTKGK-------TNLESLLSDNQTFNRGLIIHKL 789
                           +    ++   ID+  +           S+ +  +    G  +H L
Sbjct: 926  SYSGLVKQGSHGASHDATIEVSGFDIDSADEQDESELIEPERSIFTFPRGARPGTFLHTL 985

Query: 790  LQVIFTLPEHKRK---NFITSYCT-KNAKLWPAKEYKNLLLSITRLL---ENPMMTTAMS 842
             + +        +     IT     +  +L      + L+ ++       +N  ++   S
Sbjct: 986  FEDVEFTEPATSEHNTQVITHLLESEQYELEWLPVLQQLVDTVLNTALDGKNLKLSEKDS 1045

Query: 843  CDSYSEVSVSGKINCPKK-------------------------DIIISGRIDQISISQQN 877
                 E+     I                                ++ G ID +   Q  
Sbjct: 1046 TQRLVEMEFLLPIEVLAASELNQTIQYHDPLSAKAGDLGFQTVQGMLKGFIDLVFEHQGK 1105

Query: 878  IFIFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKDSYPNK 918
             ++ ++K++H          E +      + +  Q  IY   L     ++
Sbjct: 1106 YYVLDWKSNHLGDDVAVYHGEALKSAMADHRYDLQYQIYALALHRFLRSR 1155


>gi|90424770|ref|YP_533140.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90106784|gb|ABD88821.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris
           BisB18]
          Length = 866

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 106/612 (17%), Positives = 183/612 (29%), Gaps = 162/612 (26%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+E  K     DF DL++    L ++      +  +  Q   +IL+DE QDT++ Q
Sbjct: 205 LYAAYQERLKVLNAADFGDLLLEDIRLFREHPD---VLRQYQQRFKYILVDEYQDTNVAQ 261

Query: 193 WEVIRSLTEDFFVGKN-------------------------------------------- 208
           +  +R L +     KN                                            
Sbjct: 262 YLWLRLLAQAPSSPKNSSILRDAALRAAPQHDGAETIASAGTDLVPHPEERGQGPRVSKG 321

Query: 209 ------THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   S P+ +  VGD+ QSIY + GAE   +LR                 II L  
Sbjct: 322 EAEPPAASSPPKNICCVGDDDQSIYGWRGAEVDNILRFDHDFP--------GAKIIRLER 373

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RST  IL     + +  E   G +                                  
Sbjct: 374 NYRSTGHILAAASHLIAHNEGRLGKTL----------------------------RTEDV 405

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
           + ++ + T  +DS  +       AR I   I  +               +  DI +LVR 
Sbjct: 406 DGEKVTVTGSWDSEEE-------ARAIGEEIEQLQRDGH----------KLNDIAILVRA 448

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                        L     +           +   I+D +A  R I S  DDL+F  ++ 
Sbjct: 449 SFQMREFEDRFVTL----GLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIVN 504

Query: 443 SPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIA 495
            P     +  +  +    R     + E  +      +         + ++          
Sbjct: 505 VPKRGLGDATVQLLHDHARKRKIPLTEAARAIVDSDELKPKARGSLRELMTSFERWRMQR 564

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELIS 552
           +  +  +   ++L      + +      +     + L E +      E         L  
Sbjct: 565 EVKTHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFEN--------LQG 616

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            LE     + R   A+ + V +MT+H+AKGLE   VFL      +F H+           
Sbjct: 617 FLEHISLVMDREGGADDDAVSVMTLHSAKGLEFDSVFLPGWEEGLFPHQR---------- 666

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNT 670
                                  +    ++  EE  RL +VG+TRA  +  L    +   
Sbjct: 667 ----------------------ALDEQGRAGLEEERRLAHVGITRARKRAKLYFASNRRI 704

Query: 671 SNEKKSNQRTWY 682
                +   + +
Sbjct: 705 HGTWNTTLPSRF 716


>gi|152991215|ref|YP_001356937.1| ATP-dependent DNA helicase UvrD [Nitratiruptor sp. SB155-2]
 gi|151423076|dbj|BAF70580.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp.
           SB155-2]
          Length = 681

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/556 (17%), Positives = 181/556 (32%), Gaps = 124/556 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y++   +N ++DF+DL++ T  +L +      +   I  +   I+IDE QDT+ +Q
Sbjct: 164 LYKRYQDYLLENNLVDFDDLLVLTYTILDQD---KELCETISNKYQFIMIDEYQDTNELQ 220

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +++ L           S    +  VGD+ QSIY + GA  K +L              
Sbjct: 221 NRLVQKLC----------SQHNNICVVGDDDQSIYGWRGANVKNILEFPNQFDN------ 264

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               II+L  ++RST  IL   + +     N  G                          
Sbjct: 265 --VKIIKLENNYRSTKKILEAANNLIQHNRNRLGK------------------------- 297

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
           ++VS  D   + +  +                 A  I   I  +I             ++
Sbjct: 298 KLVSTMDDGQDIEILALHD----------EQEEALEIGKRIQKLIDAG----------VR 337

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +I VL R    +  I      LK    I+          +   +KD+++  R I +  
Sbjct: 338 PSEIAVLFRINALSRSIEEAFNKLK----INFKLVGAIRFYERAEVKDIISYLRIITNPC 393

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETE----------TVYEYIQKFANCGISKFQ 482
           D+ S   ++  P     +    K+  + +E +          +  +  Q           
Sbjct: 394 DEFSLKRIINRPKRGIGKATYEKLLQKANEKDECILEMLLHTSEEDLAQIIGKKSAKTIL 453

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQ 541
             +  +  L  ++   S ++F          ++ + +   G E +  +DEF        +
Sbjct: 454 AFLHNLKYLKELS-EESLYNFLEEFDRTLGIKEYYRALPDGLERVANIDEFYGMFRDYIK 512

Query: 542 NSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   SL + I+++                 V IM+VH +KGLE   +F++      F  
Sbjct: 513 QNPQNSLDDFINDISLQSD----QDQIGGEAVSIMSVHASKGLEFEHLFVIGMEEGFFPL 568

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                       EE  RL YV +TRA  
Sbjct: 569 TGDGC-------------------------------------DIEEERRLGYVAITRAKR 591

Query: 661 QLIICKHSNTSNEKKS 676
            L++    +   + + 
Sbjct: 592 GLVLSHVKSRFYKGRR 607


>gi|90023404|ref|YP_529231.1| DNA-dependent helicase II [Saccharophagus degradans 2-40]
 gi|89953004|gb|ABD83019.1| ATP-dependent DNA helicase UvrD [Saccharophagus degradans 2-40]
          Length = 724

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 110/598 (18%), Positives = 199/598 (33%), Gaps = 116/598 (19%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      + +     L   K + A YEEA  +  V+DF +L++ +++L  K      +  
Sbjct: 157 EGIRPQYIQEGHDPFLATMKQVYAAYEEACARAGVVDFAELLLRSHELWLKNPT---LLK 213

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                   +L+DE QDT+ +Q+  +R L                + AVGD+ QSIY + G
Sbjct: 214 HYQNRFRALLVDEFQDTNSVQYAWLRVLAG----------PEGCITAVGDDDQSIYGWRG 263

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + + + +   +          + I L  ++RST  IL   + V +      G     
Sbjct: 264 AKIENIQQFEVDFKN--------VNTIRLEQNYRSTGTILEAANAVITNNSQRLGKK--- 312

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                             LW        S  + +     S F+   +       AR I  
Sbjct: 313 ------------------LW-------TSGADGELIDLYSAFNEQDE-------ARYIVE 340

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            IS  +                 D+ VL R    + ++            ++        
Sbjct: 341 RISEWVKDGGARE----------DVAVLYRSNAQSRVLEEAF----IREGMAYRIYGGQR 386

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470
             + L IK+ +A GR IL+++DD +F  ++ +P        +  +    R +  ++YE +
Sbjct: 387 FYERLEIKNALAYGRLILNRQDDAAFERVINTPTRGIGSKTVDTLRLMAREQGFSMYEAM 446

Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
                   F     +  +   + +  L          D   +I+     +       G  
Sbjct: 447 LGAIRNGVFTARATNALKAFDELLKLLEASIAAARLPDQMDIIINESGLKDFHAKEKGER 506

Query: 525 ---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTA 580
               ++ L+E +             +  L   L++       +      + V++MT+H+A
Sbjct: 507 GQARLENLNELVVACGAF-NAEDDEISPLAEFLDRAALDAGDQQADEYEDAVQMMTLHSA 565

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE P+VFLV     +F HK                                       
Sbjct: 566 KGLEFPLVFLVGMEENLFPHKMS----------------------------------MED 591

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
               EE  RL YVG+TRA  +L++    +       N       V +         +I
Sbjct: 592 AGGLEEERRLAYVGITRAMKKLVLTYAESRRMYGNENFNAISRFVREIPKQLVEEVRI 649


>gi|268315971|ref|YP_003289690.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
 gi|262333505|gb|ACY47302.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
          Length = 768

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 103/662 (15%), Positives = 192/662 (29%), Gaps = 115/662 (17%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  L   Y+EA +K   LDF+DL++   +L ++      +  +  +   ++ IDE QDT+
Sbjct: 193 AAKLYGPYQEALRKANALDFDDLLLKPIELFEQHPD---VLQRYQERWRYLHIDEYQDTN 249

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + R L            + R L  VGD+ QSIY+F GA+   +L  +R       
Sbjct: 250 RAQYVLARKLAA----------AHRNLCVVGDDAQSIYAFRGADIGNILSFQRDYP---- 295

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 ++I L  ++RST  IL + + +     +                          
Sbjct: 296 ----DATVIRLEQNYRSTRRILKLAEAIIQHNRDQLEKRLW------------------- 332

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                       +       A+++   I ++           + 
Sbjct: 333 ---------TENPEGDPIVLIEALSERDE-------AQKVEQRIRDLH---------VRY 367

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  VL R    +  +    R       I               IKD++A  R ++
Sbjct: 368 GYAFRDFAVLYRTNAQSRSLEEALR----RGGIPYRVVGGLSFYQRKEIKDVLAYLRLLV 423

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK-----FANCGISKFQH 483
           +  D  S   ++  P     +  I  +    R    ++++ I++              Q 
Sbjct: 424 NPHDAASLQRVINYPARGIGQRTIEVLADYARQHGLSLWQAIERVEEVGLPTRAQKAVQE 483

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               I             +    +L      ++       E     + + E LN      
Sbjct: 484 FHFLIARHAAKMDAMPVDELARSLLQESGLLEELRREGTPEALARWENVQELLNAIAEYV 543

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             +      L   L++             N V +MT+H +KGLE PVVF+      +F  
Sbjct: 544 ATAGEQ-ATLSGFLQEVALLTDLDEMPEDNRVTLMTLHASKGLEFPVVFITGLEEGLFP- 601

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                   +   EE  RL YVG+TRA  
Sbjct: 602 ---------------------------------LAQATQDRKDLEEERRLFYVGVTRAQR 628

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            L +C   +     +         + +   +    +           +      S  + E
Sbjct: 629 HLFLCYARSRYRYGEQQPSVRSRFLEELDTDVIVTEAGLPFRRGEVLD--RRPRSERYVE 686

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             P      ++Q        + ++     +I     +  +         LE      +  
Sbjct: 687 MDPHYYRRPLQQRRSSGATRRVVYDEGAGEIVPGARVEHAIFGEGKVLALEGQGDQARAI 746

Query: 781 NR 782
             
Sbjct: 747 VF 748


>gi|23014129|ref|ZP_00053963.1| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 760

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 115/644 (17%), Positives = 203/644 (31%), Gaps = 117/644 (18%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                 + +DR  T +   +   +   AK L   Y+E  K     DF DL+++   +   
Sbjct: 168 LMATIQRWKDRAVTPEKAAADGGAEGQAKALYRAYQERLKSLNACDFGDLLLHVLTVFLS 227

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
              +     +      ++L+DE QDT++ Q+  +R L +          + R +  VGD+
Sbjct: 228 DAEA---LARWQGRFRYLLVDEYQDTNVAQYLWLRLLAQ----------THRNICCVGDD 274

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIYS+ GAE   +LR ++              ++ L  ++RST  IL     + +  E
Sbjct: 275 DQSIYSWRGAEVGNILRFEKDFP--------GARVVRLESNYRSTPHILAAASALIANNE 326

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G +      I H    I ++ T  +W+ V                            
Sbjct: 327 GRLGKTLR--PGIPHEPESIEKIRTKAVWDGVA--------------------------- 357

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +   I  +               +   + +LVR    T               I
Sbjct: 358 --EARMVVEEIETLQRRGE----------KLSSMAILVRAGFQTREFEERL----ITTGI 401

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
           +          + L I+D MA  R ++S  D L+F  ++ +P     E  I  I    R 
Sbjct: 402 AYRVIGGPRFYERLEIRDAMAYLRLVVSAADGLAFERIVNTPKRGLGEAAIQTIHMAARA 461

Query: 462 ETETVYEYIQKFA------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           E   + E  ++                  I+ +     +       +    IL      +
Sbjct: 462 EQVPLLEAARRLTGTDELKPKPRQALAKFIEDLDRWRSLLDSMPHAELAATILDESGYVE 521

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
            + +    +    ++ L E +      +         L S LE     ++    A  + V
Sbjct: 522 MWKADKSPDAPGRVENLKELVAALEEYDS--------LASFLEHVALVMENDSRAEADSV 573

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            IMT+H AKGLE   VFL     +VF H                                
Sbjct: 574 VIMTLHGAKGLEFDSVFLPGWEEEVFPHSR------------------------------ 603

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
              +        EE  RL YVG+TRA  ++++   +N     +   +     V +   + 
Sbjct: 604 --ALAESGTKGLEEERRLAYVGLTRARKRVLVSFAANRRIYNQWKSQLPSRFVDELPDSH 661

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                 +  +    +E     W+          +          
Sbjct: 662 VERSGERGLHGSGLEE-SRAAWNDPAWSRARFGQPRQAAAPTSW 704


>gi|238755779|ref|ZP_04617111.1| ATP-dependent DNA helicase rep [Yersinia ruckeri ATCC 29473]
 gi|238706006|gb|EEP98391.1| ATP-dependent DNA helicase rep [Yersinia ruckeri ATCC 29473]
          Length = 672

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 97/641 (15%), Positives = 212/641 (33%), Gaps = 123/641 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + + +    L++ +    +    +          +S      +  +  A Y++  
Sbjct: 118 KDLTQKWLEEDKTQLQQLISTISNWKNDLMSPAAAAAQARSERD--KVFAHCYAMYDDHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+  +    +R +   ++ ++L+DE QDT+  Q+++++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQNNEE---VRERWQNKLRYLLVDEYQDTNTSQYQMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                            VGD+ QSIYS+ GA P+ ++       +          +I+L 
Sbjct: 233 H----------RARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ--------LQVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S              G     + + + ++  
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKRLFSEL------------GYGDALKVITANNED- 321

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                                   A R+            + ++   +  Q  D  +L R
Sbjct: 322 ----------------------HEAERVV---------GELIAHHFIKKTQYGDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHI 494
            +P        I K+        ++++                    Q    ++  +I +
Sbjct: 407 NTPKREIGPATIQKLGEWANQRNKSLFRASFDLGLSQYLTGRGLESLQRFTHWLDGIIRL 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN----EQNSYS 545
            +          +L   +            +     +  ++   ++        E N   
Sbjct: 467 VEREPIAA-VRDLLHGMEYESWLFETSPSPKAAEMRMKNVNLLFSWMTEMLEGSELNDPM 525

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           SL ++++         +  +  + ++V++MT+H +KGLE P VFLV     +  H+    
Sbjct: 526 SLTQVVTRFTLRDMMERGENDEDLDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID 585

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              +   +E  RL YVG+TRA  +L   
Sbjct: 586 -----------------------------------EDNVDEERRLAYVGITRAQRELFFT 610

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                    +  +      + +   +D   +  +   +  +
Sbjct: 611 HCKERRQYGELLRPEPSRFLMELPQDDLDWESERKVITPEE 651


>gi|156972811|ref|YP_001443718.1| ATP-dependent DNA helicase [Vibrio harveyi ATCC BAA-1116]
 gi|156524405|gb|ABU69491.1| hypothetical protein VIBHAR_00483 [Vibrio harveyi ATCC BAA-1116]
          Length = 671

 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 220/659 (33%), Gaps = 123/659 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L++ L    +    +        + +       L  +   
Sbjct: 112 DQLALLKELTEKQLDGDKDLLRQLLSCISNWKNDMLTPEQAKVLAQGEQQ--QLFAFCFE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI     LL+  +    +R +    I ++L+DE QDT+  Q+++
Sbjct: 170 MYQKQMKAYNALDFDDLISLPVQLLRNNEE---VRQRWQNRIRYLLVDEYQDTNTSQYDL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 227 VKLIVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + ++       +           A R+         T  + ++      + KD
Sbjct: 308 -------DGEKLKVLLAKN-------EEHEAERV---------TGELIAHKFLNRTEYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----MQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +   K++
Sbjct: 401 AFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFEVSFEMGLEQHLTGRGLENLRRFTKWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFT-LRNEQN 542
             +   A+     +    ++                +     +  + +  ++     E +
Sbjct: 461 VAIADQAERGDTVEAVRSLVRDIHYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 543 SYS----SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +Y     +L+E++  L       +     + + V++MT+H +KGLE P V+L+ +   + 
Sbjct: 521 NYDQAEKTLKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGIL 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL+YVG+TRA
Sbjct: 581 PHQTSID-----------------------------------EDNVEEERRLMYVGITRA 605

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             +L            +  + T    + +   +D   +  K   S  +          +
Sbjct: 606 QRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEANKKPVSAEERMAKGQAHIAN 664


>gi|37524633|ref|NP_927977.1| exonuclease V subunit beta [Photorhabdus luminescens subsp. laumondii
            TTO1]
 gi|36784058|emb|CAE12927.1| Exodeoxyribonuclease V beta chain [Photorhabdus luminescens subsp.
            laumondii TTO1]
          Length = 1202

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 133/908 (14%), Positives = 276/908 (30%), Gaps = 150/908 (16%)

Query: 86   TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
            T++       L   +     + + +RD   +  + +           +     + K    
Sbjct: 302  TKKGEVPEHSLFVVIDDLYQKPLTLRDLIISRAIIE-----------VRQSIRQEKLTRG 350

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
             + F+DL+   +D LK    S  +   I +     LIDE QDT   Q+ +  ++      
Sbjct: 351  QMGFDDLLTRLDDALKGPG-SDLLAETIRRRYPVALIDEFQDTDPQQYRIFHTIYGT--- 406

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                      L  +GD KQ+IY+F GA+    +R +       T          L  ++R
Sbjct: 407  -----QPENGLLFIGDPKQAIYAFRGADIFTYIRARSQVSAHYT----------LETNWR 451

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            S   ++  V+K+F   EN     +     +             +   ++   +D +    
Sbjct: 452  SAYSMVQAVNKLFMRSENPFLFEQIPFIEVS----------AAEKNRELSFSYDGEEQAA 501

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLV 380
               W    + +        ++R  +  I + +   +     +  +   R + A DI VLV
Sbjct: 502  LNFWLQPGEGVSIGDYEQTMSRLCSAQIRDWLQAGSEGRALLHKSEGSRPVTAADITVLV 561

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R RK+  LI      L      SV  ++R  + D +  KD++ L + +LS E +      
Sbjct: 562  RSRKEATLIRNALNLLSIP---SVFLSNRESVFDTVEAKDILWLLQAVLSPEKERVLRSA 618

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            L S LF  +   I K+       + + +    +          + +    L  +    + 
Sbjct: 619  LASGLFGLTARQIDKLNHDEKTWDQLVDEFDGYF--------RLWQRRGVLPMLRAVIAN 670

Query: 501  HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQY 557
            H     +L +  G ++            + E L      L +E      L + IS  +  
Sbjct: 671  HHIAENLLASYDGERRLTDVM------HIGELLQEISLQLDSEHAVTRWLAQQISHPDPQ 724

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                +    ++ + V+I T+H +KGLE P+V+L    +                      
Sbjct: 725  SENQQIRLESDRHLVQICTIHKSKGLEYPLVWLPFICN-------------FREQKRAIY 771

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL------IICKHSNTS 671
                   +        + I+  ++    E  RLLYV +TR+          +I  +   +
Sbjct: 772  HDRTSFNACLDIFPDDETIELAEQERLAEDLRLLYVALTRSVYHCSVGVAPLIKGNKKKA 831

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY--EWSTHHPENTPLEREET 729
             +   +Q     ++      D       L         I+   E   H  ++        
Sbjct: 832  GDTDLHQCALGYLLQKGVKGDADFLATSLKELSGDGIVISSINETDDHPWQSQSKNDLVL 891

Query: 730  IKQLMDEQKIPKKLFSPIK--------------------------NDINEPYILNPSTID 763
              +    +       +                               I     ++ S   
Sbjct: 892  SARQFKRRVQDDWRITSYSGLRNSVVHRGNASAYFAGEESIDVIVQSIAPKLDVDASGER 951

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
               +    +  +  +  + G  +H +L+ +        K       +       +   + 
Sbjct: 952  QLVEQPEMTPHTFPRGASAGTFLHAILEELSFSQLPDEKWLAEQLQSAGFDERWSGTLQQ 1011

Query: 824  LLLSITRL-LENP--MMTTAMSCDSYSEVSVSGKINCPKKDI------------------ 862
             ++ I  + L +    +          E+     +    +                    
Sbjct: 1012 WMVDIFTIPLNDEGVQLAKIPLHHQQDEMQFYLPVEQLLRSQMLDTLIRRYDPISARCPQ 1071

Query: 863  --------IISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLS 905
                    ++ G ID +   Q   ++ +YK++    +         EI  I + +  Q  
Sbjct: 1072 LEFQQVKGVLKGFIDLVFCWQGKFYLLDYKSNWLGEESQFYTRQAMEIAMIEHRYDLQYQ 1131

Query: 906  IYEKILKD 913
            +Y   L  
Sbjct: 1132 LYTLALHR 1139


>gi|261211432|ref|ZP_05925720.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341]
 gi|260839387|gb|EEX66013.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341]
          Length = 1208

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 136/942 (14%), Positives = 282/942 (29%), Gaps = 139/942 (14%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               +   I + ++   +  L      ++   +  + K   D   +L    +         
Sbjct: 263  ALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAKSKKDNPPQL-ALFERIEAFLAEP 321

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             + K      A      +L     +AK  +  L F+DL+   +  L   D    +  +I 
Sbjct: 322  VSLKTPLLVHAIHHCRHWLA----KAKSTHHWLSFDDLLTQLSAAL-DNDEQGLLGERIR 376

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                  +IDE QDT  +Q+ +   L  D             L  +GD KQ+IY+F GA+ 
Sbjct: 377  TLYPVAMIDEFQDTDPLQYSIFSRLYLD--------HPQCGLLMIGDPKQAIYAFRGADI 428

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               ++ +       T          L  ++RS+A ++  V++VFS   +    S+D    
Sbjct: 429  FTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSFATHPFIYSDD---- 474

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            I  +          + W Q      +      E          +    + +A   A  I 
Sbjct: 475  IPFQPVAASPGADKRHWTQEGQVQPALTYWWPEDLDKP---QSKTDYYAQMAEACAAQIQ 531

Query: 355  NMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +++      +    R   I+A D+ VLVR   +  ++      L      SV  ++R  +
Sbjct: 532  HILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGIASVYLSNRDSV 588

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  +D+  L   +   ED+      + S LF  +  ++  +    +E E +    ++
Sbjct: 589  FASDVAQDIERLLLAVWQPEDERLLRAAIASNLFALTASELDALNNDENEWEQLIAEFRQ 648

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            +        + V+  +  ++               L   +G +             + E 
Sbjct: 649  YRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL------HISEL 694

Query: 533  LNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L    R   +    L+ L   +              +   +    V+I+T+H +KGLE P
Sbjct: 695  LQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYP 754

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL    S                 ++     +    +        + +    +    E
Sbjct: 755  LVFLPFVMS-------------YRESSEGKYYDVESATTWVDLTGNEEALAKADQERLAE 801

Query: 647  YNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
              RLLYV +TRA     I        N  +         +     + +      L  ++ 
Sbjct: 802  DLRLLYVALTRAVYGCFIGISPLRNGNSSQEPTSAHCSAMGFLLQDGQEGGIADLQQALL 861

Query: 706  KDEWIAYEWSTHHP--------ENTPLEREETIKQLMDEQKIPKKLFSPI---------- 747
            K      + +   P        +   L+  E   + + +    +   +            
Sbjct: 862  KQCESLPDVAQCPPPKRFEQVYQPPQLDERELTARELSQAIDRRWRITSYSGLVMQSSHA 921

Query: 748  ---KNDINEPYILNPSTIDTKGKTNLESLLS-------DNQTFNRGLIIHKLLQVIFTLP 797
                        +    +D+  + +  +L S         +    G  +H L + +    
Sbjct: 922  RHDPLQEFPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQ 981

Query: 798  EHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVS 850
                +           ++   A+    L   +  +L  P       +   M+    +E+ 
Sbjct: 982  SAHSEPNTKIILDLMESEQIEAEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELE 1041

Query: 851  VSGKINCPKKD-------------------------IIISGRIDQISISQQNIFIFEYKT 885
                I                                ++ G ID +   Q   ++ ++K+
Sbjct: 1042 FLLPIEVLDAPNLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQYQGRYYVLDWKS 1101

Query: 886  HHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            +H       + P           +  Q  IY   L     ++
Sbjct: 1102 NHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|212550968|ref|YP_002309285.1| ATP-dependent DNA helicase II [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549206|dbj|BAG83874.1| ATP-dependent DNA helicase II [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 743

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 107/586 (18%), Positives = 187/586 (31%), Gaps = 121/586 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   +   Y    K    +DF+DL+  T  L  +      I  K       IL+DE QDT
Sbjct: 175 ILYDIYLTYSNRCKIANAMDFDDLLFYTYLLFNE---CKEIAQKYWNRFQFILVDEYQDT 231

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q E+I+ LT +             +  VGD+ QSIYSF GA    +L  + I  +  
Sbjct: 232 NFAQHEIIQQLTIE---------QHHRICIVGDDAQSIYSFRGANISNILNFRSIYPES- 281

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   + +L  ++RST  I+   + + S        +  S   I             
Sbjct: 282 -------KLFKLEQNYRSTQTIVNAANSLISKNREQIPKTIYSQKAI------------- 321

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                           ++   T ++    + S       R+A  I+ M            
Sbjct: 322 ---------------GEKIRLTGFYSDYEEGS-------RVANCIAEMH---------ML 350

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + KD ++L R    + +     R L     I               IKD++A  R  
Sbjct: 351 KKYEYKDFVILYRTNAQSRIFEEALRKL----NIPYKIYGGLSFYQRKEIKDVVAYMRLA 406

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYE-------YIQKFANCGISK 480
            +  D+ +   ++  P     +  + KI          ++E       Y  K       K
Sbjct: 407 SNLADEEAIRRIINYPNRGIGDITVNKIIAAASFHNTILWEVLSNPLSYNLKINAATFEK 466

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNE---VIDVLDEFLNFT 536
            +     I+  +      + ++   +I+        +       E    I  L+E  N  
Sbjct: 467 LKKFQLLINRFVEKVSTQNAYNAGRMIIRETGLINNELYEDQTPENISRIQNLEELSNSL 526

Query: 537 LRN------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E N+   + + ++E+           + N N V +MT+H+AKGLE   VF+
Sbjct: 527 YTFVSSRIEEGNANIKISDFLAEIFLLTDQD-TDKNENINFVTMMTIHSAKGLEFKNVFV 585

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V     +F  +                                  +        EE  RL
Sbjct: 586 VGLEEGLFPSE----------------------------------LSKQNLQEIEEERRL 611

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            YV +TRA + +I+    N     + + R     + D       + 
Sbjct: 612 FYVAITRAKENVILTYAKNRFQNGQFHDRLPSRFIKDIDEQYLSLP 657


>gi|83954004|ref|ZP_00962725.1| DNA helicase II, putative [Sulfitobacter sp. NAS-14.1]
 gi|83841949|gb|EAP81118.1| DNA helicase II, putative [Sulfitobacter sp. NAS-14.1]
          Length = 806

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 107/579 (18%), Positives = 178/579 (30%), Gaps = 143/579 (24%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L + Y+   K     DF DL+++   + ++ +    +  +  +   +IL+DE QDT++
Sbjct: 194 AELYSQYQARLKDLNACDFGDLLLHMVTIFQQHED---VLGQYQRWFKYILVDEYQDTNV 250

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L           S  + +  VGD+ QSIY + GAE   +LR ++        
Sbjct: 251 AQYLWLRLLA----------SGHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP----- 295

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 ++ L  ++RST  IL     V +  E   G +                     L
Sbjct: 296 ---GAHVVRLEQNYRSTPHILAAASGVIAGNEGRLGKT---------------------L 331

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W             ++     ++D   +       AR I   I  +              
Sbjct: 332 W-------TESREGEKLRLIGHWDGEEE-------ARWIGDEIEALQRGTRELD-----P 372

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D+ +LVR                    +           + L I+D MA  R + S
Sbjct: 373 YTLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRVVTS 428

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGISKFQH 483
            +DDL+F  ++ +P     +     I  T R     + E              G ++ + 
Sbjct: 429 PDDDLAFERIVNTPKRGLGDKAQQNIQKTARENGVNLVEGARILLANGGIGGRGAAQLRL 488

Query: 484 VIKYIHELIHIA----------------------------QFCSPHDFFTLILGAKKGRQ 515
           +I  I     +A                               S  +   +IL       
Sbjct: 489 LIDGIQRWSELARGPRLQTVVDDDSVIDEGAPLFHEEYGPPEVSHVELAQIILDESGYTG 548

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
            + +    E    ++ L E +    + E         L   LE     +         +V
Sbjct: 549 FWQNDKTPEAPGRLENLKELVKALEQFEN--------LQGFLEHVSLIMDNESDDGGAKV 600

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            IMT+H AKGLE P VFL      +F  +                               
Sbjct: 601 SIMTLHAAKGLEFPAVFLPGWEDGLFPSQRS----------------------------- 631

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +        EE  RL YVG+TRA     I   +N  
Sbjct: 632 ---MDESGLKGLEEERRLAYVGITRAEQLCTISFAANRR 667


>gi|323493181|ref|ZP_08098311.1| ATP-dependent DNA helicase Rep [Vibrio brasiliensis LMG 20546]
 gi|323312528|gb|EGA65662.1| ATP-dependent DNA helicase Rep [Vibrio brasiliensis LMG 20546]
          Length = 672

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 104/686 (15%), Positives = 231/686 (33%), Gaps = 137/686 (19%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L++ L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQMALL------------KELTEKQLDGDKDLLRQLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +          K       L  +    Y++  K    LDF+DLI     LL+  +    +
Sbjct: 146 MLTPEQAKAQAKGEQQ--QLFAFCFEMYQKQMKAYNALDFDDLISLPVLLLRTNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+++++ +  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNTSQYDLVKLIVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    S 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLRLIKLEQNYRSTSRILRAANILIANNPHVYDKSL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S                               + ++       +           A R+
Sbjct: 303 FSEIP----------------------------DGEKLKVLLAKN-------EDHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                    T  + ++      + KD  VL R    + LI           ++    +  
Sbjct: 328 ---------TGELIAHKFLNRTEYKDYAVLYRGNHQSRLIEKSL----MQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++E
Sbjct: 375 TSFFARAEIKDIMAYLRILVNPDDDNAFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFE 434

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +       +  G+   +    ++ ++   A+     +    ++              
Sbjct: 435 ASFEMGLEQTLSGRGLENLRRFTGWLVKIADQAERGDTVEAVRSLVRDINYEDWLYETSS 494

Query: 520 --RFGNEVIDVLDEFLNFTLR------NEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             +     +  + +  ++ +        +Q    S++E++  L       +     + + 
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNYDQEE-KSIKEVVQRLTLRDMMERGEEDDDSDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H +KGLE P V+L+ +   +  H+                              
Sbjct: 554 VQLMTLHASKGLEFPYVYLIGSEEGILPHQTSID-------------------------- 587

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                    +   EE  RL+YVG+TRA  +L            +  + T    + +   +
Sbjct: 588 ---------EDNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFD 638

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTH 717
           D   +++K   S  +          +
Sbjct: 639 DVEWEQVKKPVSAEERMAKGQAHIAN 664


>gi|114775529|ref|ZP_01451097.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1]
 gi|114553640|gb|EAU56021.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1]
          Length = 1105

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 145/975 (14%), Positives = 289/975 (29%), Gaps = 123/975 (12%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L++     ++E  +     +      ++  +  +       G+         L      +
Sbjct: 209  LEDSLFAIMDERLQQCDALMPAGAKQELPALLAFA------GSNRGDDDLAALSSWPAAR 262

Query: 61   -CIEERFSLLSSFFLTQKFTP-------QKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
                 ++  L    +T            ++     + +  +    ++  +   +   + +
Sbjct: 263  ITNLPQWQRLLPELMTANGLRKPGGINVRRGFPATKEHAATKQQFQQWLEQLAQIDGLEE 322

Query: 113  RFNTYKMFKS-----------TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
             F       +             +  +L    +   +   ++    DF ++ +     L+
Sbjct: 323  SFAALMTLPAEPRFAESQWQVLESLFSLLLAADTRLQRLFEQRGEADFIEIALRAMRALE 382

Query: 162  KRDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                    +  K+D  I+HIL+DE QDTSL+Q  +++SLT  +          R+LF VG
Sbjct: 383  DEAGNPTDLLLKLDYRIHHILVDEFQDTSLLQIRLLQSLTAGWQAADGYD---RSLFMVG 439

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D  QSIY F  AE    L               +   + L  +FRS   I+  V++ F+ 
Sbjct: 440  DPMQSIYRFRKAEVGLFLLA-----SANRAGLPEVEKLTLERNFRSAPAIVDWVNRAFAT 494

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                +              + +   G V+L                            + 
Sbjct: 495  IFPDEPDILLGAVEHAAADAALDHAGVVRL--------------------------SLQQ 528

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                 A  +   +   +G  T            + I +L R RK    I           
Sbjct: 529  DDEQEAAAVVEAVRQELGKRTPAGK-------PQRIAILARSRKHLHSIMPALTA----A 577

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             I+    D   L     I+ + AL R +L   D  S+  +L+ P    S   +  + +  
Sbjct: 578  SIAYKAIDILPLNRRPEIRQMRALLRALLHAADRESWAALLRGPCCGLSTQALHGLLSGD 637

Query: 461  HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                      +       +  +  ++++   +  +   +       +L     R      
Sbjct: 638  ARPVLSTLSDETRLAGIDADARDRVRFLIRALAPSLQAAGRVPLRGLLTCAWQRMGMPGL 697

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHT 579
               E    +D  L      E+        L   LE+           + +  V ++T+H 
Sbjct: 698  LSPEATGNIDAMLALIDELEEGGSIVFSLLDERLEKLYAEPSLLAGGDESPRVELLTMHG 757

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMH-IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGL+  VV L   G +  +          +P       +       +S + +   +   
Sbjct: 758  AKGLQWDVVILPGLGKKGSNSDTPVLAFADVPVQEGVHPLIAVRAAVRSSDAVYDLVRDV 817

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             KK    E  RLLYV  TRA   L++    +  + + +       ++ D   +D      
Sbjct: 818  EKKRENNELARLLYVACTRAETTLLMFGEVSEKSGQAAAGSLLKLLLPDGIEDD------ 871

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                           +     E T  E                 L +           L 
Sbjct: 872  --------------CFGADRVEATQSEATT--------------LSAKTPLLRMCSLPLL 903

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF--------ITSYCT 810
            P  +    ++  E   +  +    G  +H  LQ +      + +          I+    
Sbjct: 904  PDDLPVTAESETEYFWAGAEAAPVGNAMHAALQHVAERGIERWQAADSAAEVAQISRLLM 963

Query: 811  KNA--KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI 868
                     +        ++TR+L +      +S    S+      ++      I    I
Sbjct: 964  AEGLSGRTLSDATARCEAALTRVLASNHAKRILS-GEQSDAHCEWALSSHHGGFISHHVI 1022

Query: 869  DQISISQQNI-FIFEYKTHHHVPQE----IEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
            D+  I    + +I +YKT  H   +    +      H  QL  Y  IL +  P + +   
Sbjct: 1023 DRSFIDADGVRWIIDYKTASHEGGDLQGFLAEESTRHAPQLQRYAAILGELEPQREIRAA 1082

Query: 924  LIYVSEPKVFIIPQN 938
            L +     +  +P  
Sbjct: 1083 LYFPMLDALCEVPSA 1097


>gi|312149185|gb|ADQ29256.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi N40]
          Length = 659

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 187/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGANYNNMLQFEKDY-------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 264 -NVKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +   +   S        
Sbjct: 308 -------------VIDVFIFEDEIQES-------EFVANQIIELSRLEDFKSKK------ 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 342 ---IGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 394

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +                     
Sbjct: 395 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDITFSFTNISSYDKALNKQV 454

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 455 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 514

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L               N  + +MTVH+AKGLE   V
Sbjct: 515 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEEAENININLMTVHSAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 575 FFIAVEDNIIPHHR---------------------------------IIEDSEVDLEEER 601

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D L+I   +    +++   +     + 
Sbjct: 602 RVFYVALTRAKDSLVITMANKRKKDRQIFDQLPSRFIS 639


>gi|94499918|ref|ZP_01306454.1| DNA helicase II [Oceanobacter sp. RED65]
 gi|94428119|gb|EAT13093.1| DNA helicase II [Oceanobacter sp. RED65]
          Length = 736

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 108/603 (17%), Positives = 204/603 (33%), Gaps = 126/603 (20%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +             + + YEEA ++  ++DF +L+   ++L         +  
Sbjct: 155 EGLRPQHIQPFGDQWAQTMVTIYSAYEEACQRAGLVDFAELLFRAHELWLNNPS---LLT 211

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +  Q   +IL+DE QDT+ IQ+  +R L  +             + AVGD+ QSIY + G
Sbjct: 212 QYQQRFRYILVDEFQDTNTIQYAWLRVLAGNAIP----------VMAVGDDDQSIYGWRG 261

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + + +  +               I+L  ++RST +IL   + V        G +   
Sbjct: 262 ARIENIQQFSKDF--------AGAQEIKLEQNYRSTGNILKAANSVIDNNPTRLGKN--- 310

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                             LW             +  +  + F+   +       AR I  
Sbjct: 311 ------------------LW-------TEGDQGEPIALYAAFNEQDE-------ARFIVD 338

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +          S+ K      +D+ VL R    + ++            +         
Sbjct: 339 QVE---------SHFKNNDRTYQDMAVLYRSNAQSRVLEEAF----IRAGLPYRIYGGQR 385

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYI 470
             + L IK+ MA  R + ++ DD S   ++  P     E  +  +    R    ++++ +
Sbjct: 386 FYERLEIKNAMAYLRLLQNRHDDASLERVINVPARAIGEKTVETLRQYAREHGTSLWQAL 445

Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
           ++       A    +  Q     I E+    Q    H+    ++      +  +   G +
Sbjct: 446 EQAIRKDLLAARATTALQKFESLIDEMEVTCQSIELHEQVDHVIQTSGLIEHHMKEKGEK 505

Query: 525 VI---DVLDEFLNFTLRNEQNSYSSLQE------------LISELEQYPPTI-KRAHSAN 568
                + L+E +N     + +   ++ E            L + L+Q             
Sbjct: 506 AQARIENLEELVNAAKTFDPDDIEAVDENGEPVDVEYASPLAAFLDQAALDAGDAQADEF 565

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V++MT+H+AKGLE PVVF+      +F HK                           
Sbjct: 566 EDSVQMMTLHSAKGLEFPVVFMAGLEEGLFPHKMS------------------------- 600

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                        +  EE  RL YVG+TRA ++L IC   +     + N  +    + + 
Sbjct: 601 ---------ADDPNRLEEERRLCYVGITRAMEKLYICYAESRRMYGQENFASPSRFIREI 651

Query: 689 FHN 691
            H+
Sbjct: 652 PHD 654


>gi|218249903|ref|YP_002375114.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi ZS7]
 gi|226321913|ref|ZP_03797439.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi Bol26]
 gi|218165091|gb|ACK75152.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi ZS7]
 gi|226233102|gb|EEH31855.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi Bol26]
          Length = 659

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 187/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGANYNNMLQFEKDY-------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 264 -NVKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +   +   S        
Sbjct: 308 -------------VIDVFIFEDEIQES-------EFVANRIMQLSRLEDFNSKK------ 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 342 ---IGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 394

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +                     
Sbjct: 395 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDITFSFTNISSYDKALNKQV 454

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 455 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 514

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L               N  + +MTVH+AKGLE   V
Sbjct: 515 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEEAENININLMTVHSAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 575 FFIAVEDNIIPHHR---------------------------------IIEDSEVDLEEER 601

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D L+I   +    +++   +     + 
Sbjct: 602 RVFYVALTRAKDSLVITMANKRKKDRQIFDQLPSRFIS 639


>gi|150024269|ref|YP_001295095.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum
            JIP02/86]
 gi|149770810|emb|CAL42275.1| Probable ATP-dependent DNA helicase, UvrD/REP family [Flavobacterium
            psychrophilum JIP02/86]
          Length = 1052

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 134/851 (15%), Positives = 286/851 (33%), Gaps = 106/851 (12%)

Query: 86   TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
              +       +  +L     +  K  ++ + Y+ F   +  L+L   ++    + ++   
Sbjct: 288  NAKDKDIIEGIANELIFILYKVYKNYEKKDFYQAFLKNITPLSLLNTVSNELAKIQEDQN 347

Query: 146  VLD---FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +L    F  LI            + +I  ++ ++  H  IDE QDTS +QW+ +  L ++
Sbjct: 348  ILSISEFNKLIFEHIQ----NQPAPFIYERLGEKYKHFFIDEFQDTSEMQWQNLIPLIDN 403

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                ++      +L  VGD KQSIY + G + +   +   + + +   + +   +  L  
Sbjct: 404  ALSSEDLQGIQGSLMIVGDPKQSIYRWRGGKAE---QFIDLAKTKNPFSNKDKEVFNLET 460

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSE--DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            ++RS   ++   +  F          +  D       + S   + G V +   +      
Sbjct: 461  NYRSFEAVIDFNNDFFKFLSQKFSNEDYKDLYENYSFQKSNAKKGGYVNI-SFIPEIDTD 519

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              + + E      D     +  +I+  ++A                        +I++L 
Sbjct: 520  FVSEEDEENIDKNDIYLTTTLQTII--KVAAE-----------------GFLYNEIVLLT 560

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R  K   L+            I V+ ++  ++     +K ++ + R++  + D  S    
Sbjct: 561  RNNKHGILLANYLTE----NDIPVISSESLLINASSEVKFILNMLRYLNDKNDIES---- 612

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            L + L+         +       + +Y+ IQ      + K+           + ++  S 
Sbjct: 613  LANGLYYLD----QNLENNIETHDFIYQGIQYKDEIELEKWLANFGIQLSFQN-SRRKSL 667

Query: 501  HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            ++   LI                     +  FL+  L  +      + + +   ++    
Sbjct: 668  YEIAELIAAKCI--------NSENNNAYVQYFLDIVLERDVKYQMGISDFLEYWDKNGHK 719

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI--MPSLNDDPGI 618
            +    +   N +RIMT+H +KGLE PVV          + K  K         L+ D  +
Sbjct: 720  LSIPSAEGSNAIRIMTIHKSKGLEFPVVIFPFVEENYSAPKREKMWIDSQSDDLDFDKFL 779

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                 + K      + +     +    +   +LYV +TRA +QL I  +S   N K    
Sbjct: 780  IDKSSKVKEYGENAASVYNQKSQEDLLDNINVLYVALTRAEEQLFIISNSKKRNSKGELP 839

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                    +   + +      L                                      
Sbjct: 840  NNSASFFIEFLEDYKNFDSNILNYEFGNC---------------------------KRIS 872

Query: 739  IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
              K L +  KN      ++NP+ I    + +L       +    G ++H++L  I    +
Sbjct: 873  KQKPLEAKRKNIEAINSVINPNAIKIAQRESLMWGTHQQEAIEFGNVLHEILSFI--QTK 930

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKIN 856
                  +         L    + + +  ++  ++ +P +      +S  Y+E S+     
Sbjct: 931  KDIPLALKKALET--GLISENQQEEVAKTVIEIVFHPELNDFFHENSKVYNEQSI----- 983

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
               K  + + + D+++IS QN ++ +YKT  H           +  QL  YE  L +   
Sbjct: 984  --IKKGLQTIKPDRVTISGQNAYLLDYKTGKH--------QSKYENQLKEYELALIEM-- 1031

Query: 917  NKSL-VCLLIY 926
              ++    LIY
Sbjct: 1032 GFNVQKKSLIY 1042


>gi|15594952|ref|NP_212741.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia
           burgdorferi B31]
 gi|223889056|ref|ZP_03623646.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 64b]
 gi|2688535|gb|AAC66967.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia
           burgdorferi B31]
 gi|223885482|gb|EEF56582.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 64b]
          Length = 659

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 187/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGANYNNMLQFEKDY-------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 264 -NVKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +   +   S        
Sbjct: 308 -------------VIDVFIFEDEIQES-------EFVANRIMQLSRLEDFKSKK------ 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 342 ---IGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 394

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +                     
Sbjct: 395 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDITFSFTNISSYDKALNKQV 454

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 455 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 514

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L               N  + +MTVH+AKGLE   V
Sbjct: 515 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEEAENININLMTVHSAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 575 FFIAVEDNIIPHHR---------------------------------IIEDSEVDLEEER 601

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D L+I   +    +++   +     + 
Sbjct: 602 RVFYVALTRAKDSLVITMANKRKKDRQIFDQLPSRFIS 639


>gi|78183791|ref|YP_376225.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9902]
 gi|78168085|gb|ABB25182.1| ATP-dependent DNA helicase, Rep family [Synechococcus sp. CC9902]
          Length = 798

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 104/630 (16%), Positives = 205/630 (32%), Gaps = 99/630 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y +A   N      D        ++    +  +R    +   H+L+DE QD
Sbjct: 202 KLTADVYRRYRKALAANNA---LDFDDLLLLPVQLLQQNEQVRRYWHRRFCHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++I+ L  D    +     S R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYDLIKLLVTDGKEPQAYDDWSGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +A +   + ++++L  ++RSTA IL   + + S            T              
Sbjct: 319 QAPDDATR-TMVKLEENYRSTATILAAANALISNNSERIDKVLRPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  + T   D + +       A  + + +  M          
Sbjct: 365 ---------------GEGELITLTRCDDEIAE-------AEAVVHRLRMM--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ VL R    +  +          + I  +        D   IKDL+A  R
Sbjct: 395 ANPDLSWGDMAVLYRTNAQSRAMEESL----VRWGIPYIVVGGLRFYDRREIKDLLAYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  I ++    ++    ++      E ++        
Sbjct: 451 LLVNPADTVSLLRVINVPKRGIGKTTIQRLTDAANQLGIPLWDVVSDAEAVRSLGGRSAK 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + +++L    Q  +P +    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCELVNDLKTQVQTAAPSELLQQVMEKSGYVSELITEGTDEAEERRRNLQELVNAA 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N   +L+  ++          +      + V +MT+H++KGLE PVV LV    
Sbjct: 571 LQYQEENDDGNLEGFLASAALSSDADNKD--TAADRVTLMTLHSSKGLEFPVVCLVGLEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +             +  T           +  
Sbjct: 655 TRAKERLFLSHASERRLWGGMREAAVPSVFLSELPEALVQGDLPQTGGAALRRERRLDRL 714

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFS 745
           T      P        +       P + +S
Sbjct: 715 TRVDRGQPSSAPANAVRRRQAGPAPGRSWS 744


>gi|84394502|ref|ZP_00993213.1| ATP-dependent DNA helicase Rep [Vibrio splendidus 12B01]
 gi|84374879|gb|EAP91815.1| ATP-dependent DNA helicase Rep [Vibrio splendidus 12B01]
          Length = 672

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 111/685 (16%), Positives = 224/685 (32%), Gaps = 135/685 (19%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL     TQ                   L   +   +++ + 
Sbjct: 98  ALGLKAGFSLFDDQDQLALLKELTETQID---------GDKDLLRSLMSTISNWKNDMLT 148

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                   +  +       L  +    Y++  K    LDF+DLI     LLK       +
Sbjct: 149 PDQAKARAQGEQE-----QLFAFCFEMYQKQMKAYNALDFDDLIAMPVLLLKTN---QEV 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E++R L  +             L  VGD+ QSIYS+
Sbjct: 201 RERWQSRIRYLLVDEYQDTNTSQYELVRLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    S 
Sbjct: 251 RGAKPQNLVLLGEDYPN--------LRLIKLEQNYRSTSRILRAANILIANNPHVYEKSL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S      +                                     +    +    A RI
Sbjct: 303 FSEIPDGEKL-----------------------------------KVLNAKNEEHEAERI 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I          ++      + KD  VL R    + LI           ++    +  
Sbjct: 328 TGEI---------IAHKFLNRTEYKDYAVLYRGNHQSRLIEKAL----MQNRVPYKISGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++E
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFE 434

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +           +   +    +I  +   A+  +  +    ++              
Sbjct: 435 ASFEMGLEQTLTGRGLENLRRFSDWIVRISDNAERGNTVEAVRSLVRDINYEDWLYETSP 494

Query: 520 --RFGNEVIDVLDEFLNFTL-----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
             +     +  + +  ++ +      N      +L+E++  L       +   + + ++V
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNYDKEEKTLREVVQRLTLRDMMERGEDNDDADQV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P VFL+     +  H+                               
Sbjct: 555 QLMTLHASKGLEFPYVFLMGAEEGILPHQTSVD--------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +   EE  RL+YVG+TRA  +L   K        +  + T    + +  H+D
Sbjct: 588 --------EGNVEEERRLMYVGITRAQKELTFTKCRERRQYGELIKPTQSRFLDELPHDD 639

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTH 717
              + +K   S  +          +
Sbjct: 640 VEWESVKKPQSAEERMEKGQAHIAN 664


>gi|149189144|ref|ZP_01867432.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio shilonii AK1]
 gi|148837107|gb|EDL54056.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio shilonii AK1]
          Length = 1205

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 137/946 (14%), Positives = 290/946 (30%), Gaps = 148/946 (15%)

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
            L    +      +   L  +  TQ     +N++T++  K          +         +
Sbjct: 264  LPTWVEAITDWSKQETLDYYLPTQLEKFAQNVLTEKTPKGDAPTMAIFTE--------IE 315

Query: 113  RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
             F        T       ++       AK++   L F+DL+ + +  L   +    +  K
Sbjct: 316  AFLAQPPELKTSLLALAIQHCRQRLALAKEQKQWLSFDDLLTHLSAAL-DSESGDTLAEK 374

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            I  +    +IDE QDT  +Q+++              + +    F +GD KQ+IY F GA
Sbjct: 375  IRTQFPVAMIDEFQDTDPLQYQIF--------SHVYLNHADCGWFMIGDPKQAIYGFRGA 426

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +    ++ +   Q   T          L  ++RS+  ++T V+ +F   ++A    +D  
Sbjct: 427  DIFTYIQARNQVQDHYT----------LGTNWRSSESMVTGVNALFKQADSAFLYDDD-- 474

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAY 351
              I   +       +   W+      + +     + W    +S + +      +A   A 
Sbjct: 475  --IPFHAVNASPKASKMQWQF-----NGEHQAAMQFWLQDAESPVAKSEYVPTMAAATAQ 527

Query: 352  TISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I  ++     G   + +      I+A +I VLVR   +  LI    + L      SV  
Sbjct: 528  HIKQVLTQSQTGKAALINGDNNEAIEAGNIAVLVRTGSEGQLIK---QALAERGIASVYL 584

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
            ++R  +       DL+ L   +  Q+D+      L S LF      +  +    +  E +
Sbjct: 585  SNRDSVFTSEIADDLLRLMLAVWHQDDERMLKSALASQLFALPAVQLDSL----NNDENL 640

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            +E +         ++         L  +       +    +L    G +           
Sbjct: 641  WEQVVAEFRDYRQQWISR----GILPMLRSVLFKREISNRLLSTDGGERLLTDYL----- 691

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTA 580
              L E L    ++ ++  + L+ L   +E             +   +  N V+I+T+H +
Sbjct: 692  -HLGELLQAARQDMESDSALLRWLGQAIEDAKQGLGSSDEHIQRLESERNLVQIITIHKS 750

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE  +V+L                       +          S       S  +    
Sbjct: 751  KGLEYDLVYLPFV-------------VSYREAMEAKYYDAESQSSVLDLRQSSASMAQAD 797

Query: 641  KSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            K    E  RL+YV +TRA     I           K      +  +     N + +   +
Sbjct: 798  KERLAEDLRLIYVALTRAVYGCFIGMAPLRNGRSTKEPTGVHHSAIGHLIQNGQEMGVSE 857

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLER--------EETIKQLMDEQKIPKKLFSPIKNDI 751
            L++++N+    +   +         ER        EE + +            +     +
Sbjct: 858  LSSALNQLANASQAIAITEVPELDEERYQELAQPTEELVAKAQSMAIDRDWRITSYSALV 917

Query: 752  -------NEPYILNPSTIDTKGK---------TNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                   +    +  S +D                +++    +    G  +H + + I  
Sbjct: 918  KQSHHSNDSEVFIEASGLDIDSSEEHEVDVLLEPEKTIFHFPKGARPGTFLHTVFEEIEF 977

Query: 796  LPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSY 846
                   +    I     +    + A+    +   + +++   +      +    S    
Sbjct: 978  TEPATSLQNSEVIRQLLERE--QYDAEWLPVIQQLVDQVMNTALDGEALYLRDKDSTQRL 1035

Query: 847  SEVSVSGKINCPKK-------------------------DIIISGRIDQISISQQNIFIF 881
             E+     I                                ++ G ID +   Q   ++ 
Sbjct: 1036 VEMEFLLPIEVLDAVSLNRVIQRYDALSAKANELGFYTVKGMLKGFIDLVFEHQGKYYVL 1095

Query: 882  EYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPNK 918
            ++K++H   +         +   + + +  Q  IY   L      +
Sbjct: 1096 DWKSNHLGDEAERYQKHQLDNAMVDHRYDLQYQIYALALHRFLKTR 1141


>gi|260776643|ref|ZP_05885538.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC
            BAA-450]
 gi|260607866|gb|EEX34131.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC
            BAA-450]
          Length = 1206

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 130/888 (14%), Positives = 267/888 (30%), Gaps = 137/888 (15%)

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
              ++F    +           +       +AK++   L F+DL+   +  +   D S  +
Sbjct: 313  AIEQFLAKPISLEAPLLAHAIEQCREMLAKAKQQKQWLSFDDLLTQLSAAI-DEDDSELL 371

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              +I       +IDE QDT  +Q+ +   +  +             LF +GD KQ+IY F
Sbjct: 372  TQRIRSLYPVAMIDEFQDTDPLQYSIFSRIYLE--------HPQCGLFMIGDPKQAIYGF 423

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA+    ++ +       T          L  ++RS++D++  V++VF  P +     +
Sbjct: 424  RGADIFTYIKARNQVSSHFT----------LGTNWRSSSDMVAAVNQVFETPSSPFVYDD 473

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS--LPQESSASILAR 347
            D    I     +       + W       D Q  P    W    +   L +      +A+
Sbjct: 474  D----IPFIPVKSSPNADKRQWMI-----DGQRQPAMTYWLQEAEEKPLAKGEYHQAMAQ 524

Query: 348  RIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  I  ++               +  IQA DI VLVR   +  +I    + L      
Sbjct: 525  ACADEIHRILSAAQSERAFFDDGKSQHAIQAGDIAVLVRTGSEGRMIK---QALAEQGIA 581

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            SV  ++R  +      +DL  L + +L+ E+D +    L S LF      + K+    +E
Sbjct: 582  SVYLSNRDSVFVSQVAEDLQRLLQAVLTPENDRALRASLASELFALDAGTLDKLNNDENE 641

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                     + A     +++ +      L  +    S       +L    G +       
Sbjct: 642  --------WENAINEFKEYRRLWSQRGVLPMLRSVMSKRHIAERLLEEDNGERSLTDFM- 692

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMT 576
                  + E L    +   + +  L+ L   +              +   +  N V+I+T
Sbjct: 693  -----HIGELLQQASQELDSDHGLLRWLAQAISDARNGLGGSEEQIQRLESERNLVQIVT 747

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE  +VFL                      ++         ++          +
Sbjct: 748  IHKSKGLEYDLVFLPFV-------------FSYREASEAKYYDSASDKTILDITKQDASL 794

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
            +   K    E  RL+YV +TRA     +           K      +  +     N E  
Sbjct: 795  QQADKERLAEDLRLIYVALTRAVYGCFVGAAPLRNGRSTKEPTGVHHSAMGYLLQNGEPG 854

Query: 696  KKIKLTNSINKD-------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF---- 744
                LT ++ +        +      S +    T    ++ +     + +I +       
Sbjct: 855  GIADLTAALQQHAQELSCVQLADLPESVNEKLVTREAEKQALHANELQNEIDRNWRITSY 914

Query: 745  -------------SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
                           + + +      +    + +     +++ +  +    G  +H L +
Sbjct: 915  SGLVKQGASHHFDDAVTDILLLDVDSSDEQQEEEQLEPEKNIFTFPKGARPGTFLHTLFE 974

Query: 792  VIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCD 844
             +         +          ++         L   +  +L  P       +       
Sbjct: 975  EVEFTESATSDSNSEIIVNLMESEQLDPAWLPILQQLVDTVLATPLDGKQLKLNQKQPAQ 1034

Query: 845  SYSEVSVSGKINCPKKDII-------------------------ISGRIDQISISQQNIF 879
               E+     I       +                         + G ID +   Q   +
Sbjct: 1035 RLVEMEFLLPIEILTAPALNRVIQRHDPLSAKAGDLGFHSTQGMLKGFIDLVFEHQGKYY 1094

Query: 880  IFEYKTHH----HVPQEIEHIP-----YTHIAQLSIYEKILKDSYPNK 918
            + ++K+++          E +      + +  Q  IY   L      +
Sbjct: 1095 VLDWKSNYLGDNVADYHGEALKTAMVDHRYDLQYQIYALALHRFLRTR 1142


>gi|257784187|ref|YP_003179404.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
 gi|257472694|gb|ACV50813.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
          Length = 812

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 101/773 (13%), Positives = 213/773 (27%), Gaps = 192/773 (24%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++    +    V                 + ++ + L   +        
Sbjct: 28  GAGSGKTRVLTFRIAHMIADEGVRPWQVLAITFTNKAAAEMRERLEALLPNNIRGMWVCT 87

Query: 66  FSLLSSFFLTQKFTP--------------QKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                   K ++   ++    D+++  L   + +    
Sbjct: 88  FHAMCVRLLREDGDRLGYGPNFAIYDDDDSKRLVKAILSDLDIDVRQFPLNSIRSKISAA 147

Query: 111 RDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++        ++  A     +   +    +    K   +DF+DL+I   +LL K      
Sbjct: 148 KNALLYPDDVEAQAASPMDHVVARVYRALQTRLDKANAMDFDDLLIKAFELLSKYPD--- 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +  K  +   +I +DE QDT+ +Q+ + + L   +          R L  VGD+ QSIYS
Sbjct: 205 VLAKYQERFRYINVDEYQDTNGVQYAITKLLASKY----------RNLMVVGDDDQSIYS 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ K +L  ++  ++          +++L  ++RST  IL   + V +   + +   
Sbjct: 255 WRGADIKNILAFEKDYEEAV--------VVKLEQNYRSTGHILAAANAVVAHNSHRKPKR 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                           + + ++       D   + +        
Sbjct: 307 LF----------------------------TDEGDGEKIQVYQASDERDEGA-------W 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I  +              +    I V  R    + ++  +         +      
Sbjct: 332 IGSEIEKLHDKG----------MSYDSIAVFYRTNAQSRILEDML----LRAGVPYKIVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I+D+MA  + +++ +DD++ + ++ +P        I KI     H   + +
Sbjct: 378 GTRFFDRAEIRDVMAYLKVVVNPDDDMAAMRVINTPRRGIGATSIQKIQTYALHNGLSFF 437

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSP-----HDFFTLILGAKKGRQQFISRFG 522
              +            V   + E     +          +    I+      +   +   
Sbjct: 438 SACEACVMEESLLTAKVRNALVEFTSAIEHGRHIDGELDEVVEAIIDRSGLIRALEAEHT 497

Query: 523 --------------------NEVIDVLDEFLNFTLRNEQNSYSS---------------- 546
                               +E  D ++E L    +  +                     
Sbjct: 498 IEADGRIENIREFFGVAAEFDESHDDVEETLESLQQLREAGVLDAQDAASLNATGFNAAT 557

Query: 547 ---------------------------LQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                                      L   +  L           S +   V +MT+H+
Sbjct: 558 GTLSSVAVSPTPTSQEENLHPQVVAEKLPAFMEWLALRSDLDSMDGSTS--AVTLMTIHS 615

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P VF+      +F H + +                                   
Sbjct: 616 AKGLEFPAVFVAGMEEGIFPHANYEAEAAQLEEE-------------------------- 649

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                    RL YV +TRA  +L +   S                V +     
Sbjct: 650 --------RRLAYVAITRARKRLYLTYASTRRTYGSVQANPVSRFVGEIPQEH 694


>gi|259906888|ref|YP_002647244.1| DNA-dependent helicase II [Erwinia pyrifoliae Ep1/96]
 gi|224962510|emb|CAX53965.1| DNA helicase II [Erwinia pyrifoliae Ep1/96]
          Length = 720

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 92/530 (17%), Positives = 175/530 (33%), Gaps = 82/530 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRMLAGD----------TGKVIIVGDDDQSIYGWRGAQVENIQRFLQDFPA----- 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 274 ---AETIRLEQNYRSTNNILKAANTLIANNNGRLGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  +    F+ L +       AR +   I   +              
Sbjct: 310 -------TEDSDGEPIAIYCAFNELDE-------ARFVVNRIKVWMEKGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R I ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQTSMPYRIYGGMRFFERQEIKDSLAYLRLISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++        +  A    S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARERQLTLWQTARALLQEKALAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L H       H     ++        +    G +    I+ L+E +N T +   
Sbjct: 462 TELVDSLAHETSDMPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H AKGLE   VF+V     +F 
Sbjct: 522 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTMHAAKGLEFMQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +   +                    +      ++  +   K      +R
Sbjct: 582 SQMSLEEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSR 631


>gi|315181034|gb|ADT87948.1| exodeoxyribonuclease V, beta subunit [Vibrio furnissii NCTC 11218]
          Length = 1214

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 138/906 (15%), Positives = 267/906 (29%), Gaps = 150/906 (16%)

Query: 101  KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
               +    +    F    +            +      +AK     L F+DL+   +  L
Sbjct: 306  DAPRHAVFEAVQAFLAEPVSLEAPLLAHAITHCRTLLAKAKASKQWLSFDDLLTQLSASL 365

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
               D    +  +I       +IDE QDT  +Q+ +   +                LF +G
Sbjct: 366  DGDDEGT-LAARIRTLYPVAMIDEFQDTDPLQYSIFSRIY--------LPHPQCGLFMIG 416

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++VF++
Sbjct: 417  DPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVAAVNQVFTL 466

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQE 339
            P++      D+       S+     G   L        + +  P    W+   D+ + + 
Sbjct: 467  PDSP--FIYDNDIPFLPVSASPKAAGRAWLL-------NGEVQPALTYWSMTADAPVTKG 517

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRV--------------IQAKDILVLVRKRKD 385
            +    +A   A  I  ++          +R               IQA DI VLVR   +
Sbjct: 518  AYLDTMAAATASQIQTILTAAQQGKAQFRRGGAIQASDSIQAGDSIQAGDIAVLVRTGNE 577

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              LI      L      SV  ++R  +       D+  L + +L+ ++D +    L SPL
Sbjct: 578  GRLIKD---ALAQQGIASVYLSNRDSVFTSAIAPDMQRLLQAVLTPDNDRAMRAALASPL 634

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
            F  +   +  +    +E E      +++    + +          L  +    S      
Sbjct: 635  FALNAQQLDALNNDENEWENALNEFKQYRQLWLDR--------GVLPMLRAVLSLRHIAE 686

Query: 506  LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PP 559
              L    G +Q            L E L    +   + +  L+ L   +           
Sbjct: 687  RWLEEPDGERQLTDFM------HLSELLQQATQEIDSDHGLLRWLAQSIADAEQGLGGSD 740

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
               +   +  N V+I+T+H +KGLE  +VFL                      ++     
Sbjct: 741  EAIQRLESERNLVQIVTIHKSKGLEYELVFLPFV-------------LSYREASEGKYYD 787

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                Q+    +     I+   K    E  RL+YV +TRA     I      +        
Sbjct: 788  ASSGQTLLDISGQDASIQQADKERLAEDLRLIYVALTRAVYGCFIGVAPLRNGRSSKEPT 847

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
              +         + +   + L              +   P   P    E++   + E   
Sbjct: 848  GVHHSALGYLLQNAQQGGLALLAESLHQHTALACVAVTEPPAVP----ESVFVPLAEPLP 903

Query: 740  PKKLFSPIKNDINEPYILNPSTI--------------------------DTKGKTNLESL 773
            P    S          I + S +                          +        S+
Sbjct: 904  PLSARSLSHEIDRLWRITSYSGLVKQGSHQHDASFEIGGFDVDSADEHDEAVLAEPERSI 963

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLL 832
             +  +    G  +H L + +        ++           +   A+    L   +  +L
Sbjct: 964  FTFPRGAQPGTFLHSLFEEVEFTQPASDEHNTRIIAELMEREQIDAEWLPVLQSLVDTVL 1023

Query: 833  ENPM------MTTAMSCDSYSEVSVSGKINCPKKDII----------------------- 863
              P+      +         +E+     I       +                       
Sbjct: 1024 RTPLNGKDLCLNQKAPHQRLTEMEFLLPIEVLSAPALNRVVQRHDPLSAKAGDLGFYTVQ 1083

Query: 864  --ISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHIPY-----THIAQLSIYEKILK 912
              + G ID +   Q   ++ ++K++H        + E +        +  Q  +Y   L 
Sbjct: 1084 GMLKGFIDLVFEHQGKYYVLDWKSNHLGDEVAAYQGERLAQAMAEHRYDLQYQLYALALH 1143

Query: 913  DSYPNK 918
                ++
Sbjct: 1144 RFLRSR 1149


>gi|242280176|ref|YP_002992305.1| exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638]
 gi|242123070|gb|ACS80766.1| Exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638]
          Length = 1059

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 141/939 (15%), Positives = 305/939 (32%), Gaps = 94/939 (10%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT---LQQASQTQCIEERFS 67
            +       D   +      + + +     +        K      L++  +     +   
Sbjct: 199  DHPAERLTDQEEIAGLLQIEFDAFQKAVRDLSTLIDADKLAASAHLKKYLEHAAKIDFMD 258

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L     +  K + +  +  +         ++     +      RD+    +   +    +
Sbjct: 259  LPKESTMVAKDSFEDCVNKKSKGDIGSYHEKVYADLKQAHEIYRDKATILRGAYALAPFV 318

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             + + + A   E + +N +L   DL    + +L+          ++   ++H+L+DE QD
Sbjct: 319  RIVEEIRADIIEYQTRNGMLLSADLPKVASFVLQGGSALPDAFCRMGSRLHHLLVDEFQD 378

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            TSL QW  +  L  +    +       +LF VGD KQ+IYS+ G   +      +  +  
Sbjct: 379  TSLAQWNAMIPLAIECLSKRG------SLFYVGDVKQAIYSWRGGRSELFDEVGQDPE-- 430

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
              +   +F+   L  ++RS   ++   ++ F    +     + +     +      +   
Sbjct: 431  -LSGLSEFTPANLDYNWRSLEHVIGFNNEFFDALADYDLAMDLAERLYPNGP----EEQQ 485

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            ++L +++    D        +       +  +   +  ++ I            +     
Sbjct: 486  IELAQRISHSFDKASQQLPPNQDRIGGYVRLQRVFASSSQEIVDETRRNFD---LLMEEL 542

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                + +DI VLVR      L+            I V+  +   L  H  ++ +++L +F
Sbjct: 543  IPRREYRDICVLVRSNGHAQLVCDWLVE----KSIPVITENSLQLDRHPIVRQMVSLLKF 598

Query: 428  ILSQEDDLSFVCMLK-----SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            +   +DDL+F+  +        + +   DD+FK   +R +                 ++ 
Sbjct: 599  LDYPQDDLAFLEFICGQEIFGHISDIEHDDLFKWLAERDKG--------PLHRRFSEQYP 650

Query: 483  HVIK-YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                  I   +  +   +P+D  + ++   K  + +      +    +  FL      E+
Sbjct: 651  DFWNTQISPFLRKSGLMTPYDLASEMVSRFKLVETY-----PQDELYIRRFLEVVHLAEE 705

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +SL   +   E      K     + N VRIMT+H +KGLE PV+ +      V    
Sbjct: 706  KRGTSLAAFLDFWELSSAEEKVPLPESVNAVRIMTIHKSKGLEFPVIVVPFHNWSV---- 761

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                   +  +  D    +    S   +          +     E   LLYV  TRA  +
Sbjct: 762  -SGPDTSLADIEIDGQTMLTPMSSSLGDIYY-----ENRTRMFSEQLNLLYVAWTRAGQE 815

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            L     S  +            ++   F++   ++                  +T+ PE 
Sbjct: 816  LYGFLPSEKTRGVSPALAAIELILEGKFNDLGMLEYGITPEDTQ------VLPTTNKPEY 869

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
            +  E  +   +   +  +  +L   +       + L   + D                  
Sbjct: 870  SSEEPCDDFCETDPDGLLEPELMGWLPRLRVYRHNLEDYSYD---------------ARM 914

Query: 782  RGLIIHKLLQVI---FTLPEHKRKNFITSYCTKNAKLWPAKEY-KNLLLSITRLLENPMM 837
            RG + H  ++ +          R++   ++    A           +       L  P +
Sbjct: 915  RGELAHNAMENLILTGNDEADCRRSAEAAFAKFPAVTEEENVLVPEVTDMALWALSVPDI 974

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
              A+      EV++    +   +      R D + +  +   + EYKT    P+      
Sbjct: 975  RAAIERG-RPEVAIM---DAQGETH----RADLLLLDDKRALVVEYKTGQPSPENE---- 1022

Query: 898  YTHIAQLSIYEKILKDSYPN-KSLVCLLIYVSEPKVFII 935
                 Q+  Y K+L+D Y N K L  LL+Y+       +
Sbjct: 1023 ----KQVKRYLKLLRDMYGNEKELRGLLVYLDGKFTREV 1057


>gi|224533580|ref|ZP_03674169.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi CA-11.2a]
 gi|224513253|gb|EEF83615.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi CA-11.2a]
          Length = 659

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 103/566 (18%), Positives = 184/566 (32%), Gaps = 128/566 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGANYNNMLQFEKDY-------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 264 -NVKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +   +   S        
Sbjct: 308 -------------VIDVFIFEDEIQES-------EFVANQIIELSRLEDFKSKK------ 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 342 ---IGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 394

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +                     
Sbjct: 395 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDITFSFTNISSYDKALNKQV 454

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 455 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 514

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L               N  + +MTVH+AKGLE   V
Sbjct: 515 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEEAENININLMTVHSAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 575 FFIAVEDNIIPHHR---------------------------------IIEDSEVDLEEER 601

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEK 674
           R+ YV +TRA D L+I   +    ++
Sbjct: 602 RVFYVALTRAKDSLVITMANKRKKDR 627


>gi|322514926|ref|ZP_08067941.1| ATP-dependent helicase PcrA [Actinobacillus ureae ATCC 25976]
 gi|322119114|gb|EFX91268.1| ATP-dependent helicase PcrA [Actinobacillus ureae ATCC 25976]
          Length = 672

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 108/654 (16%), Positives = 219/654 (33%), Gaps = 125/654 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K+++ + + +    LK  +    +    +          +       +  +   
Sbjct: 112 DQLALLKHLLPENVAEDKDLLKALISTISNWKNDLLSPEMVLTRLRDERE--RVFSHFYQ 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+   K    LDF+DLI+    L ++   +     +  Q++ ++L+DE QDT+  Q+E+
Sbjct: 170 LYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKT---RWQQKVRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I+ L  +                VGD+ QSIYS+ GA+P+ + R +              
Sbjct: 227 IKLLVGN----------EANFTVVGDDDQSIYSWRGAKPENMQRLREDF---------DL 267

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + +    ++       S      + +               
Sbjct: 268 KVIKLEQNYRSSQRILHCANILIDNNDHIFQKRLFSNLGEGEKLN--------------- 312

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                               + +  +    A RI            + ++      + KD
Sbjct: 313 --------------------VIEAKNEEHEAERIV---------GELIAHRFSNKTKYKD 343

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L+      L    +I    +          IKD+MA  R +++Q+DD 
Sbjct: 344 YAILYRGNHQSRLLEK----LLMQNRIPYKISGGTSFFARAEIKDMMAYLRLVVNQDDDA 399

Query: 436 SFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+      +  +++E       IQ+         Q   ++I
Sbjct: 400 AFLRIVNTPKREIGAVTLEKLGLLANEKQVSLFEAIFDFELIQRLTPKPYQALQDFARWI 459

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN---- 539
            E+   A+   P +    +L   +            +        +     +        
Sbjct: 460 VEIADQAERSDPIEAVKDLLAKIQYEAYLYETATSPKAAEMQSRNVQTLFEWVQGILEGD 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E     +L ++++ L       +       ++V++MT+H +KGLE P VFLV     +  
Sbjct: 520 EIEEPMTLVQVVNRLTLRDMLERGEDDDEADQVQLMTLHASKGLEFPHVFLVGMEEGILP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 580 HQTSLD-----------------------------------EDNVEEERRLAYVGITRAQ 604

Query: 660 DQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
             L   +CK      E    + + + +           +K K+T     ++  A
Sbjct: 605 QTLTFSLCKERRQYGEIIKPEPSRFLLELPQDDLVWESEKPKMTEEQKVEKTSA 658


>gi|189425128|ref|YP_001952305.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189421387|gb|ACD95785.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 665

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 88/599 (14%), Positives = 185/599 (30%), Gaps = 117/599 (19%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
           T     +   +   Y+   +    +DF+D+I+ T  +L   +    +R        +I++
Sbjct: 158 TNPLEQVTAAVYPRYQHLLRAYNAIDFDDIIMLTVRML---EELPEVRQHWQDRFRYIMV 214

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+  Q+++I  L +              L  VGD+ Q+IY + GA+   +L    
Sbjct: 215 DEYQDTNAGQYKLISLLAQ----------GHGNLCVVGDDDQAIYGWRGADIANILNF-- 262

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                 +       +++L  ++RST  IL   + V          +  + +         
Sbjct: 263 ------SAERSSCKVVKLEQNYRSTGTILNAANTVIRNNSKRSDKALWTAS--------- 307

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              GT +L   +V+  D +                        AR++   +         
Sbjct: 308 ---GTGELISLLVADTDDE-----------------------EARQVVEQLQ-------- 333

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                +     +D  +L R    +       R  +    +  V        +   +KD +
Sbjct: 334 -LAQYRDKRPWRDFAILYRSNAQSRAFEEALRMEE----VPYVLVGGQKFFERKEVKDSL 388

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYIQKFAN 475
           +    + +  D+ + V  +  P        + ++         ++Y      + I+  + 
Sbjct: 389 SYLAVLANPRDEAALVRTINFPRRGIGGTSLLRLQQWSLEHNLSLYDTLGMADQIEGLSE 448

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLD 530
                       I + +      +     T +       Q+      N       I+ ++
Sbjct: 449 ATRKAVNGFHTMIRQELADFTSNNMASQATALFKRLGINQELYRTIDNPLQARKRIENIE 508

Query: 531 EFLNFTLRNEQNSY-SSLQELISELEQYPPTIK-RAHSANHNEVRIMTVHTAKGLESPVV 588
           + +N     E+ +  + L + +  +       +   +    + V +M++H +KGLE P V
Sbjct: 509 QVINALAGFEERNPTAGLADFLERIALLEDNRRETDNDQPQDAVTLMSLHASKGLEFPQV 568

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FLV     +  H                                             E  
Sbjct: 569 FLVGLEEGLLPHHRSIDEDP----------------------------------EVAEER 594

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           RL YVG+TRA ++L I +           +R     + +           +   +   D
Sbjct: 595 RLCYVGITRARERLTISRCLKRRKYGTWEERQPSRFLAEIPPELFEGGDTEHKEAEPVD 653


>gi|298207221|ref|YP_003715400.1| putative helicase [Croceibacter atlanticus HTCC2559]
 gi|83849857|gb|EAP87725.1| putative helicase [Croceibacter atlanticus HTCC2559]
          Length = 1054

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 144/867 (16%), Positives = 303/867 (34%), Gaps = 116/867 (13%)

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEF-IKIRDRFNTYKMFKSTLA---SLTLAKYLN 134
             P  +  +++++K+   + + LK+    +    +++       +        L+L   + 
Sbjct: 289  KPIYSKSSKDLSKEQKSILDGLKQPIGSYFEDSKNKVLLLNFIEHISKNIIPLSLLNSIK 348

Query: 135  AHYEEAKKKNCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
               E  KK+  +L   +F + I N          + +I  ++ +   H  IDE QDTS +
Sbjct: 349  KEVEAIKKERGLLLISEFNNTIANAIK----GQPAPFIYERLGERYRHFFIDEFQDTSEL 404

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW+ I  L E+  +  +   +  +L  VGD KQSIY + G + ++ +        + +  
Sbjct: 405  QWQNIIPLAENPLISLDEDENQGSLLLVGDAKQSIYRWRGGKAEQFINLC----NKISPF 460

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS-EDSTTTIRHRSSRIGQVGTVQL 310
                 +  LP +FRS   ++   + +F        +   +S      +       G V L
Sbjct: 461  SINPEVTNLPNNFRSLPQVVNFNNALFKHIAQYFKVEDYESLYEKSPQEIIKKDKGYVNL 520

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                 +FD   +E    +    +   I                 
Sbjct: 521  --------------------KFFDLKNKEEENEVFPEEVLKIIKECEALG---------- 550

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
             +  DI +L R RK+  +I            IS++ ++  ++ +   +  ++ + + I +
Sbjct: 551  YKKSDICILNRNRKEGVVIADYLSE----KGISLISSETLLVKNSKEVLFIIDVLKLIKN 606

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             +D L+ V +L           I     Q+ ET+ + E +QK      S  +     I+ 
Sbjct: 607  PKDALTKVNLL--------HYLIASEKIQKDETQFILESLQKDHEDFYSSLEQY--NINF 656

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
              ++    + +D    I+ +    Q             L  FL+F       +   +   
Sbjct: 657  DHNLLTSLALYDALEYIISSFNLLQ--------SSNAYLQYFLDFAFDYGNQNVGGIHGF 708

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +    Q+   +        + V+++T+H AKGLE PVV        +   K       + 
Sbjct: 709  LEHWSQHEDKLSIVVPKGEDAVQLLTIHRAKGLEFPVVIYPYASENILDTKMDDIWVNLK 768

Query: 611  SLNDDPGIPIWIPQSKSR--NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
               +D         SK    +  ++   ++L    Q +   +LYV +TRA +QL +    
Sbjct: 769  DPYNDIPKAYISASSKLETLDESMAVPYEYLLNEKQMDGVNVLYVALTRAKEQLYVLSKK 828

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
            + +++   N +T   ++              +   IN++ W   + S H  E       E
Sbjct: 829  DINSKGVVNTKTVSGLL--------------IDFLINENIWDNTQTSFHFGEPHFKVSTE 874

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
            +      +                E       +I     +      +  +  + G++IH 
Sbjct: 875  SSSSQATQT-----------QSKVETLPFKERSITLSTNSGRLWGTTQQEAIDEGILIHD 923

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
            ++  I ++     ++ I  +  K   + P  +   +   +  ++ +P + T     + + 
Sbjct: 924  IMANINSVS--DLESAINLFVDK--GILPNDDVLRVRKKVKTIIMHPELNTYFKEANKN- 978

Query: 849  VSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                  +      I+   R D+I  +      I +YKT     Q           Q+  Y
Sbjct: 979  -YNERDLVSRDGKIL---RPDRINVVENNTAVIIDYKTGVFNEQNE--------RQVKEY 1026

Query: 908  EKILKDSYPNKSL-VCLLIYVSEPKVF 933
            +K L+D     ++   +L+Y +E    
Sbjct: 1027 KKALEDI--GYTVTKTILVYTNESLTI 1051


>gi|116071601|ref|ZP_01468869.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107]
 gi|116065224|gb|EAU70982.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107]
          Length = 798

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 103/625 (16%), Positives = 203/625 (32%), Gaps = 99/625 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y +A   N      D        ++    +  +R    +   H+L+DE QD
Sbjct: 202 KLTADVYRRYRKALAANNA---LDFDDLLLLPVQLLQQNEQVRRYWHRRFCHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++I+ L  D    +     S R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYDLIKLLVTDGKEPQAYDDWSGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +A +   + ++++L  ++RSTA IL   + + S            T              
Sbjct: 319 QAPDDATR-TMVKLEENYRSTATILAAANALISNNSERIDKVLRPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  + T   D + +       A  + + +  M          
Sbjct: 365 ---------------GEGELITLTRCDDEIAE-------AEAVVHRLRMM--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ VL R    +  +          + I  +        D   IKDL+A  R
Sbjct: 395 ANPDLSWGDMAVLYRTNAQSRAMEESL----VRWGIPYIVVGGLRFYDRREIKDLLAYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  I ++    ++    ++      E ++        
Sbjct: 451 LLVNPADTVSLLRVINVPKRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAK 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + +++L    Q  +P +    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCELVNDLKTQVQAVAPSELLQQVMEKSGYVSELIAEGTDEAEERRRNLQELVNAA 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N   +L+  ++          +      + V +MT+H++KGLE PVV LV    
Sbjct: 571 LQYQEENDDGNLEGFLASAALSSDADNKD--TAADRVTLMTLHSSKGLEFPVVCLVGLEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +             +  T           +  
Sbjct: 655 TRAKERLFLSHASERRLWGGMREAAVPSVFLSELPEALVQGDLPQTGGAALRRERRLDRL 714

Query: 716 THHPENTPLEREETIKQLMDEQKIP 740
           T    + P        +       P
Sbjct: 715 TRVDRDQPSSAPANAVRRRQAGPAP 739


>gi|292486682|ref|YP_003529552.1| DNA helicase II [Erwinia amylovora CFBP1430]
 gi|291552099|emb|CBA19136.1| DNA helicase II [Erwinia amylovora CFBP1430]
          Length = 723

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 91/530 (17%), Positives = 174/530 (32%), Gaps = 82/530 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 175 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 231

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 232 QYAWIRMLAGD----------TGKVIIVGDDDQSIYGWRGAQVENIQRFLQDFPA----- 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 277 ---AETIRLEQNYRSTNNILKAANTLIANNNGRLGK---------------------ELW 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  +    F+ L +       AR +   I   +              
Sbjct: 313 -------TEDSDGEPIAIYCAFNELDE-------ARFVVNRIKVWMEKGGAL-------- 350

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R I ++
Sbjct: 351 --NDCAILYRSNAQSRVLEEAL----LQTSMPYRIYGGMRFFERQEIKDSLAYLRLISNR 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++        +  A    S  Q  
Sbjct: 405 NDDAAFERVVNTPTRGIGDRTLDVVRQTARERQLTLWQTARALLQEKALAGRAASALQRF 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L         H     ++        +    G +    I+ L+E +N T +   
Sbjct: 465 TELVDSLAQETSDMPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSY 524

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H AKGLE   VF+V     +F 
Sbjct: 525 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTMHAAKGLEFMQVFIVGMEEGMFP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +   +                    +      ++  +   K      +R
Sbjct: 585 SQMSLEEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSR 634


>gi|332045229|gb|EGI81422.1| UvrD/REP helicase [Lacinutrix algicola 5H-3-7-4]
          Length = 1052

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 137/863 (15%), Positives = 288/863 (33%), Gaps = 120/863 (13%)

Query: 67   SLLSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             LL    L +    +       T+E  +   ++ ++LK        + +R+   K     
Sbjct: 273  DLLFEGRLVKNLEKESYYGGKATKETKQSIDNIIDELKTLFYASKLLPERYLLPKAIYKN 332

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS---AWIRYKIDQEINHI 180
            L  L++   +N      K +   +    LI   N ++ K        +I  ++ ++  H 
Sbjct: 333  LTPLSVLSAINKELLAIKAEESKM----LISEFNAIISKEIKGQPTPFIYERMGEKFKHY 388

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
             IDE QDTS +QWE +  L ++   G+N  +   +   VGD KQ+IY + G + +   + 
Sbjct: 389  FIDEFQDTSQMQWENLIPLIDNTLSGENMKAEKGSAMIVGDAKQAIYRWRGGKAE---QF 445

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT--TIRHR 298
              +  K+ +       +  L  +FRS   I+   +  F    +   ++ED +      H+
Sbjct: 446  MALFNKQNSPFFIDQEVKNLESNFRSLETIVNFNNSFFKHVASMAFINEDYSNLYQQSHQ 505

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                   G V L                    ++ D   +E    +    +  TI +   
Sbjct: 506  KPSNNTTGFVSL--------------------NFIDFDEEEDKDKVYTEHVLNTIISCQE 545

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                           KDI +LVRK+K    I        N   I +  ++  ++     +
Sbjct: 546  QG----------YNLKDISILVRKKKHGIAIAEYL----NSKGIQITSSETMLINSAPEV 591

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            + +  +   +L+  +    V +L           I +      +       +        
Sbjct: 592  RFINNILTLLLNPNNIECKVDILNF---------IAEKYNIEDKHTYFITNMNLSLEAYF 642

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
              F+     I+   +        D    I+              N     +  +L+  L 
Sbjct: 643  QSFERF--NIYVNPNNLIQLGLFDLAETIVRRFN--------LVNVSNAYIQYYLDVVLE 692

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              Q + S L   +         +        + ++IMT+H +KGLE PVV        ++
Sbjct: 693  YSQKNISDLSAFLDYFNSKKEKLSIVSPQEQDAIQIMTIHKSKGLEFPVVIFPYAEINIY 752

Query: 599  SHKHIKKMH-IMPSLNDDPGIPIWIPQSKSRN--NIVSDLIKHLKKSTQEEYNRLLYVGM 655
                 K+   + P   +     +              + +    + + + +   LLYV +
Sbjct: 753  EDIEPKEWFNLNPEQFNGFNYALLNYSKAFETYGEQGNQIHIKHQGALELDSLNLLYVAL 812

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TR  +QL +    + + +   N +++  ++ +   +       K T S  K E       
Sbjct: 813  TRPVEQLHVIGKRDINKKGDVNLKSYSGLLINYLMSISIWDNEKTTYSFGKAE------- 865

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
               P++ P +++    +  +     K+                   I     +       
Sbjct: 866  --KPKSEPKQQKIQTLKQEEFISTAKEDH----------------DIKVITNSGYLWDTK 907

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
                  +G ++H L++ I    E      +  +  ++  +  + +   L  +I  ++ + 
Sbjct: 908  QENALEKGNLVHDLMEHI--KTESDIDFAVKDF--ESNGIINSTQAAVLKNTILEIVNHK 963

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISG---RIDQISISQ-QNIFIFEYKTHHHVPQ 891
             +    + +          I   +  I  +G   R D++ I++   + I +YKT  H P 
Sbjct: 964  ELLDYFTSN--------YTIYNERDIISKTGKLYRPDRLVINEKNEVVIIDYKTGLHNP- 1014

Query: 892  EIEHIPYTHIAQLSIYEKILKDS 914
                    +  QL  Y+ IL++ 
Sbjct: 1015 -------KYQHQLQDYQDILEEM 1030


>gi|329894920|ref|ZP_08270719.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088]
 gi|328922649|gb|EGG29984.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088]
          Length = 1097

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 164/987 (16%), Positives = 297/987 (30%), Gaps = 137/987 (13%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKA-----QTLQQASQT 59
              L   +  +     +      +       ++  +      + +       +        
Sbjct: 197  LALFPGQREQDALDYMRETWELECQRRVTQLNADLAPWRAQLQEILNLLGLEETSDFLPL 256

Query: 60   QCIEE--RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                    +  +++F LTQ    +K++  +E      + KE       E           
Sbjct: 257  HSPSAIGSWRRVAAFLLTQGGEWRKSVTVKEGFPPKSEQKELHSVVSAEIRAALSPIVFE 316

Query: 118  KMFKSTLAS------------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
             +     A             + +  +L A +    ++   +DF  +     + L   + 
Sbjct: 317  GVALMPEALDDDQNWQIVTSIVAILPHLLASFWWQCQQRGEVDFTQIASAALEALGDDEN 376

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQ 224
               +  K+D  I H+L+DE QDTS  Q+E+IR LT  +F     T  SP+TLF VGD  Q
Sbjct: 377  PTDLALKLDYSIQHLLVDEFQDTSTHQFELIRRLTRGWFEHNQITPESPKTLFVVGDAMQ 436

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            SIY F GA+    +R            G +   ++L  +FRST  I+  V++VF+   + 
Sbjct: 437  SIYRFRGAQVDLFVRAIEE-----GFNGLRLERLDLCRNFRSTGGIVQWVNQVFADLPSH 491

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                       R         G   +                        +   + +A+ 
Sbjct: 492  SSPMIKRLAANRAEPV---LGGETDI---------------------QLHAFAADPNAAR 527

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
                +   + + +  D               I VL R R     I    +    D  I+ 
Sbjct: 528  ETEFVVERVRSWLEADAST-----------TIAVLGRTRSQLAPIMKSLK----DAGIAY 572

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC--TQRHE 462
               D   + D++A+ D + + R I+   D L+ +  L++P    S + + +      R +
Sbjct: 573  NAADVERIADNVAVADFVNVLRVIVDPSDTLASMACLRAPWIGASLEVLHQAQTIHARLD 632

Query: 463  TETVYEYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
            T   +                         I          +   +   +     G   +
Sbjct: 633  TGDWHSSFHALEQDSEDLELQGCLARFNAVIRWGFVFRGRRAVRLWLETLWEGLAGFSIY 692

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             S   +  ID L E L         +  S  E+   LE    T     S   + V +MT+
Sbjct: 693  SSDRDHVAIDTLFEVLEQ----NPWTIDSPWEITELLESKTIT-----SQRSSRVSVMTM 743

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV--SDL 635
            H +KGLE   V L   G    S            +    G  +   +      +   + L
Sbjct: 744  HKSKGLEFDHVVLPSMGRSSRSSSRQLFEWAELPVPQSYGFLLGCSKGAETAGLSVGNWL 803

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
             +  K +  +E  RL YV  TR    L I                            +  
Sbjct: 804  HEREKIALNDELKRLFYVAATREKRTLYITTSYKQ----------------------QDP 841

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
            ++ +        +              P   EE      +   +    F P  ND     
Sbjct: 842  ERCRPAKGSLLGQVTQLSSHECSWHVIPEASEEISGAGSNLSPMRIARFVPATNDALPDS 901

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ------VIFTLPEHKRKNFITSYC 809
             L    ++       + L S      +G ++HK  +       +     + R        
Sbjct: 902  CLT--GVEHDLVVAQDWLESS---AVQGSLVHKAFELAIRAGQLPRCDAYLRGRLFH--- 953

Query: 810  TKNAKLWPAKEYKNLLLSITRLLE----NPMMTTAM---SCDSYSEVSVSGKINCPKKDI 862
               +  +PA +    +     +++    NP             Y E SVS +     +  
Sbjct: 954  EAVSLGYPAAKADECVEQALSVIQVTAGNPSAHWLFVGDQWQRYPEYSVSRRAADGFESY 1013

Query: 863  IISGRIDQISI--SQQNIFIFEYKTHHHVPQE-----IEHIPYTHIAQLSIYEKILKDSY 915
                 ID +    S   + I +YKT    P E        +  T+ AQ++IY  I+    
Sbjct: 1014 Y----IDLLLRSTSDDRLRIVDYKTTMPDPSETPQDFERRMLETYQAQMNIYVAIISKM- 1068

Query: 916  PNKSLVCLLIYVSEPKVFIIPQNKLNK 942
              ++    L      ++       L +
Sbjct: 1069 EGRAPEAFLFLTHTQRLVQFDATTLRE 1095


>gi|54294699|ref|YP_127114.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens]
 gi|53754531|emb|CAH16015.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens]
          Length = 1076

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 165/912 (18%), Positives = 314/912 (34%), Gaps = 138/912 (15%)

Query: 46   ILKKAQTLQQASQTQC--IEERFSLLSSFF--------LTQKFTPQKNIITQEINKKSPD 95
              + A  L +   T    + + F                T+  T   +++T+      PD
Sbjct: 271  DQQIAGALSKLLLTSDNQLRKSFDHHVGLIKKDCTSNEFTRIKTSSSDLLTK--LNDCPD 328

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
              + L K     I   D+     +    L    L  +L   +     ++  +DF  +   
Sbjct: 329  FLDALLKVNQLPIPEYDKEQWDVLQALFLLLPLLVGHLQVSF----GEHNEVDFTAISQQ 384

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
                L   D    +   +D  I+H+L+DE QDTS+ Q+E++  L + +  G+      +T
Sbjct: 385  ALAALGDLDNPTDLALYLDHSIHHLLVDEFQDTSITQFELLIKLVQGWVPGEG-----KT 439

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            LF VGD  QSIY F  AE     + K            +   +EL  +FRST  I+  V+
Sbjct: 440  LFLVGDPMQSIYRFRQAEVGLFFQAKEH-----GIGPVRLKSLELRCNFRSTETIVNWVN 494

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
              FS   + Q                  + G V     V     ++ +            
Sbjct: 495  DHFSKIFSQQVDI---------------ESGAVSFHPSVHVIEKNESSTI---------Q 530

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              Q  +    AR +   I+N + ++             + I VLVR R   P I  L R 
Sbjct: 531  AMQFKNREQEARHLIEIINNELNSNPE-----------QTIAVLVRTRSQLPEIISLLR- 578

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  I   G D  +L + + ++D  +L   +L   + LS++ +L SP       DI  
Sbjct: 579  ---QNNIPYQGTDIDLLANLVHLRDAWSLAHALLFPGNRLSWLSVLHSPYVGLGLSDIHC 635

Query: 456  ICTQRHETETVY-----EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            I          +     + IQ  +  G  +    I+ +++ +         D+    L  
Sbjct: 636  IAQYNSRKSIYHNLLHLDKIQDISEEGRIRANFFIQIMNQALLCRSHSRLSDWIADTLKN 695

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                ++ + +     ++ L   L+     E+     + ++   L ++      A     +
Sbjct: 696  L-HVEKILDKAQLNDLEQLWMLLDQ---YEKEGR--IPDMNEFLNEFN--KLYAQQTTPS 747

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS---KS 627
             ++IMT+H +KGLE   V L   G+Q +  +      +     D   + +  P     + 
Sbjct: 748  RLQIMTIHKSKGLEFDTVILPGLGAQAYRGESPMLRWLKLPTQDHSNLLLVSPIKSANQD 807

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
               +   L +  ++ +  E  RLLYV +TRA  +L +       +  KS + ++ +++  
Sbjct: 808  NCPLYDYLDQLDEEKSAYEAQRLLYVAVTRAKSRLYLL-----DHSAKSYKSSFRNLLKY 862

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                                                +   +  +    E  +PK +  PI
Sbjct: 863  ---------------------------------QEFIADPDEAQHEEQEFPLPKLVKLPI 889

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
            +    +   L  S    +        +S       G++ H+LLQ I         +   +
Sbjct: 890  EYYQKQIPSLVQSQ---ESSCP---EISSGIPRLIGIVSHQLLQWICDNHPQTINHVPWN 943

Query: 808  YCTKNAKLWPAKEYKN------LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
                  K     +         +   I+++ EN +    +S    +E     ++    ++
Sbjct: 944  LVNNELKTLGLNQEDQQTALSMIKNQISQMYENKIGFWILSRHE-NEQ-NEYELLVEYEN 1001

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
             +++  ID+  I     +I ++KT       +      H  QL+ Y + L D      + 
Sbjct: 1002 KLVTRIIDRTFIENDTQWIIDFKTGKEDINTL----QKHRQQLNEYGRYLSD-CTKFPIR 1056

Query: 922  CLLIYVSEPKVF 933
            C L Y++     
Sbjct: 1057 CGLYYLANGHWI 1068


>gi|319775408|ref|YP_004137896.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus
           influenzae F3047]
 gi|317449999|emb|CBY86212.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus
           influenzae F3047]
          Length = 670

 Score =  264 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 115/644 (17%), Positives = 223/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--GAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R +   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRSRWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 D----------RICFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGEGEKLLVIEAKNEEHEAEQIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  ++++ I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L      +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSVIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERSEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|94502048|ref|ZP_01308553.1| ATP-dependent DNA helicase Rep [Oceanobacter sp. RED65]
 gi|94425802|gb|EAT10805.1| ATP-dependent DNA helicase Rep [Oceanobacter sp. RED65]
          Length = 673

 Score =  264 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 106/649 (16%), Positives = 212/649 (32%), Gaps = 127/649 (19%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF--NTYKMFKSTLAS 126
           L   F        K+++   ++++     + +   Q     +++        +  +  A 
Sbjct: 104 LRPGFSIFDDGDTKSLLKDIMHREHGGDGDMVDMVQQAIGSLKNDLIEPEQAIAMANSAQ 163

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             L     A Y+ + K    +DF+DLI     L +       +R K  +   ++L+DE Q
Sbjct: 164 EVLVAQTYAAYDRSLKAYNAVDFDDLIRIPTVLFQTNQA---VREKWQKNTRYLLVDEYQ 220

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+E+++ L                   VGD+ QSIY++ GA P+ +   K+    
Sbjct: 221 DTNTSQYELVKILVGM----------HGKFTVVGDDDQSIYAWRGARPENLSLLKQDFP- 269

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     ++ L  ++RST  IL   +KV S  E+    +  S              G
Sbjct: 270 -------SLKVVMLEQNYRSTGLILNAANKVISNNEHEFVKTLWSDK------------G 310

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                  V  + +                          A RIA  I           + 
Sbjct: 311 YGDAIRIVKCKSEDN-----------------------EAERIATEI---------IEHR 338

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            +   + +D  VL R    + L+    +     Y+I    +          IKD+M+  +
Sbjct: 339 LRHNGKYRDYAVLFRGNHQSRLMEMKMQ----QYQIPYKLSGSQSFFAKSEIKDIMSYLK 394

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG------IS 479
            I++  DD +F+ ++  P        + K+         ++   I +           + 
Sbjct: 395 LIVNPTDDAAFLRIINVPRRQIGPSTLEKLTEYAGKRHISLLTAITEMGLEQTMSPLALD 454

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVI--------D 527
           K Q    +I+                 ++                   E          D
Sbjct: 455 KLQRFGNWINNTTKRCFTEDAVQSLKEMIHDLDYEAWLHQTSNTPNQAEARMKNVWFLID 514

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            ++  ++     E      +++ +S+L       ++      ++V++MT+H +KGLE P 
Sbjct: 515 NIERMMDKAE--ENGDEIDIEDAVSKLVLRDMLEQQEQEDELDQVQLMTLHASKGLEFPY 572

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V+++    ++  H                                      ++  T EE 
Sbjct: 573 VWIMGLEEEILPH-----------------------------------RNSIEADTIEEE 597

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            RL+YVG+TRA   L +   +      +  + T    + +   +D   +
Sbjct: 598 RRLMYVGITRAKQNLTLTLTAKRKQYGEQFEPTPSRFLEELPKDDVEWE 646


>gi|109896401|ref|YP_659656.1| ATP-dependent DNA helicase Rep [Pseudoalteromonas atlantica T6c]
 gi|109698682|gb|ABG38602.1| ATP-dependent DNA helicase Rep [Pseudoalteromonas atlantica T6c]
          Length = 671

 Score =  264 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 108/642 (16%), Positives = 209/642 (32%), Gaps = 127/642 (19%)

Query: 74  LTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEFIKIR-DRFNTYKMFKSTLASL 127
           L   F+   +  +  + K   D+     KE+L+  Q      + D     ++ K T ++ 
Sbjct: 101 LKAGFSLFDDKDSMALLKDLTDVELGGDKEQLQLLQSCISNWKNDLLLPEQLLKRTSSAG 160

Query: 128 TL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   +    LDF+DLI+    LLK  +    +R K    I ++L+DE Q
Sbjct: 161 EAEFAEFYQRYQNHLRAYNALDFDDLILLPTLLLKHNET---VRQKWQSRIRYLLVDEYQ 217

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+E++R L                   VGD+ QSIYS+ GA P+ ++   +    
Sbjct: 218 DTNTSQYELVRLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSKDFP- 266

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RS+  IL   + +     +       S               
Sbjct: 267 -------DLRVIKLEQNYRSSGRILHCANILIQNNPHVFEKKLFSEL------------- 306

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                          +  +  ++A  IA+               
Sbjct: 307 -----------------GYGSELRIITAKNEEHEAERVVAELIAH--------------K 335

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
             +    KD  +L R    + L   +        +I    N          +KD+MA  R
Sbjct: 336 FMQGTSFKDYAILYRGNFQSRLFEKVLMA----NRIPYKINGGTSFFGRTEVKDIMAYLR 391

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGIS 479
            +++Q+DD + + ++ +P        + K+         +++E           +   + 
Sbjct: 392 LLVNQDDDNALLRIINTPTRGIGRVTLEKLGNYANENHISMFEAACSPMLSTVISGKSLE 451

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLN 534
             +   ++I EL    +          ++      +       +          +     
Sbjct: 452 SVERFARWIVELSDEIKRSDSIAAIRQMIKDMGYEEWLYESSTSPKAAEMGMGNISTLFG 511

Query: 535 FTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           +        E +   SLQE+++ L       +   +   ++V++MT+H++KGLE P VF+
Sbjct: 512 WVSDMLEGGELDPPMSLQEVVNRLILRDMMERGEDTEETDQVQLMTLHSSKGLEFPYVFM 571

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V     +  H+                                       +   EE  RL
Sbjct: 572 VGMEEGLLPHQSSID-----------------------------------EDNIEEERRL 596

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
            YVG+TRA  +L            +  Q      +++   +D
Sbjct: 597 AYVGITRAQKELFFTLAKERRQYGEVIQPEPSRFLHELPADD 638


>gi|224532709|ref|ZP_03673326.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi WI91-23]
 gi|224512327|gb|EEF82711.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi WI91-23]
          Length = 659

 Score =  264 bits (673), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 188/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGANYNNMLQFEKDY-------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS+ +IL V + V    +N +  +  S+                    
Sbjct: 264 -NVKEIKLEQNYRSSKNILNVANSVILNNKNRKEKTLWSSKMCSK--------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +   +   S        
Sbjct: 308 -------------VIDVFIFEDEIQES-------EFVANQIIELSRLEDFKSKK------ 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 342 ---IGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 394

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +                     
Sbjct: 395 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDITFSFTNISSYDKALNKQV 454

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 455 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 514

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L               N  + +MTVH+AKGLE   V
Sbjct: 515 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEEAENININLMTVHSAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 575 FFIAVEDNIIPHHR---------------------------------IIEDSEVDLEEER 601

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D L+I   +    +++   +     + 
Sbjct: 602 RVFYVALTRAKDSLVITMANKRKKDRQIFDQLPSRFIS 639


>gi|261886355|ref|ZP_06010394.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 685

 Score =  264 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 107/545 (19%), Positives = 188/545 (34%), Gaps = 127/545 (23%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                 YEE    N ++DF+DL+  T  + L   D++  I         +++ DE QDT 
Sbjct: 172 AKAYKLYEEYLAANNLVDFDDLLSLTYKIVLNNNDLAHEI----SNRYKYVMGDEYQDTY 227

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q +++R L E              L  VGD+ QSIY + GA+ + +L  K        
Sbjct: 228 DLQCKLLRKLCEC----------HENLVVVGDDDQSIYGWRGAKIENILNFKDQFNN--- 274

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   +++     +  G    ST  + +            
Sbjct: 275 -----VKLIKLEENYRSTPSILKAANELIDHNRSRLGKQLFSTKKVEYPIL--------- 320

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                     + +    +I A  IA  I  ++G+          
Sbjct: 321 --------------------------IIETGDENIEATVIAGQIQTLLGSG--------- 345

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            ++A +I +L R    +  +        N  +I           + + IKD+++  R IL
Sbjct: 346 -VKADEIAILYRVNALSRSLEDGL----NKARIPYKMVGAVKFYERMEIKDIISYLRLIL 400

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK-----FQH 483
           +  +D S   ++  P     +  + K+         ++Y  I    +  I K        
Sbjct: 401 NPTNDFSLTRIINRPKRGLGKVSLAKLEKFAYENKTSIYNAIYMIDDDTIGKKLRVVLLD 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQ 541
               + EL  +A      +     L    G +++      G + +  +DEF        Q
Sbjct: 461 FANELKELSSLAPNNLLAN-----LEKSFGIKEYYKNLPDGVDRVANIDEFYALIKDQIQ 515

Query: 542 NSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           N  S +L+E ++EL       +     + + + IM+VH +KGLE   +F++      F  
Sbjct: 516 NDESFALEEFLNELALESEQDRI----SDDAISIMSVHASKGLEFEHLFVIGLEEGFFP- 570

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                           G                        S  EE  RL YV +TRA  
Sbjct: 571 ------------LIGDG------------------------SDIEEERRLAYVAITRAKS 594

Query: 661 QLIIC 665
            L + 
Sbjct: 595 GLNLS 599


>gi|298505014|gb|ADI83737.1| ATP-dependent helicase, UvrD superfamily [Geobacter sulfurreducens
           KN400]
          Length = 680

 Score =  264 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 94/602 (15%), Positives = 188/602 (31%), Gaps = 120/602 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           LA  +   Y+        +DF+D+I+ T  LL+++     +     +   +I++DE QDT
Sbjct: 168 LAATIYPRYQRLLMACNAIDFDDIIMLTVRLLQEQPE---VLDHWQERFRYIMVDEYQDT 224

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+  +  L + +          R L  VGD+ QSIY + GA+   +L  ++      
Sbjct: 225 NASQYLFVSLLAKKY----------RNLCVVGDDDQSIYGWRGADVGNILAFEKDYP--- 271

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +++L  ++RST  IL   + V                               
Sbjct: 272 -----GCRVVKLEQNYRSTGTILEAANHVIRNNSVRTEKR-------------------- 306

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW           + +        D   +       A ++   +              +
Sbjct: 307 -LW-------TDAGDGRPIDLVIAQDDEEE-------ASQVVERLQ---------MERYR 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             +   D  +L R    +       RF      I  V        +   +KD ++  + I
Sbjct: 343 HNLSFGDFAILYRTNSQSRAFEEQLRFE----DIPYVLVGGMQFYERKEVKDALSYLKVI 398

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN------CGISKF 481
            +  D+ S + ++  P     +  + KI          + E   +             K 
Sbjct: 399 DNPRDEQSLLRIVNFPRRGIGDGTVLKINQWSLEHDCPLLEAFGRVEEIEGVTGAVREKV 458

Query: 482 QHVIKYIHE-LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNF 535
               + + E +       +       +       ++      +        + + E +N 
Sbjct: 459 LAFHRLVEESVRDFRHAGNLAARVKELFDRLGLEEELYRTIEDPATARRKVENVAEVINS 518

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLV 591
               E+    ++L   + ++                  + V +M++H++KGLE P VFLV
Sbjct: 519 LASFEERIPGATLSGFLEKVSLMDEDRFAGKDKKEHGKDAVTLMSLHSSKGLEFPFVFLV 578

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  HK   +  +                                    +E  RL 
Sbjct: 579 GFEEEILPHKRTVEEGVP----------------------------------IDEERRLC 604

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA   L I +  N     K  +R     + +      +V +  +  +  ++E  A
Sbjct: 605 YVGITRARRHLTITRCLNRKKYGKLQERQPSRFLEEIPGRLLQVHEGGVKKASTEEEAEA 664

Query: 712 YE 713
             
Sbjct: 665 LA 666


>gi|163802159|ref|ZP_02196054.1| ATP-dependent DNA helicase Rep [Vibrio sp. AND4]
 gi|159173964|gb|EDP58774.1| ATP-dependent DNA helicase Rep [Vibrio sp. AND4]
          Length = 671

 Score =  264 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 97/660 (14%), Positives = 217/660 (32%), Gaps = 125/660 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L++ L    +    +        + +       L  +   
Sbjct: 112 DQLALLKELTEKQLDGDKDLLRQLLSCISNWKNDMLTPEQAKALAQGEQQ--QLFAFCFE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI     LL+       +R +    I ++L+DE QDT+  Q+++
Sbjct: 170 MYQKQMKAYNALDFDDLISLPVQLLRNN---QEVRQRWQNRIRYLLVDEYQDTNTSQYDL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 227 VKLIVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + ++       +           A R+         T  + ++        KD
Sbjct: 308 -------DGEKLKVLLAKN-------EEHEAERV---------TGELIAHKFLNRTAYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----MQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +   +++
Sbjct: 401 AFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFEVSFEMGLEQFLTGRGLENLRRFTQWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLR----- 538
             +   A+     +    ++                +     +  + +  ++ +      
Sbjct: 461 VAIADQAERGDTVEAVRSLVRDIHYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 -NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +Q    +L+E++  L       +     + + V++MT+H +KGLE P V+L+ +   +
Sbjct: 521 NYDQEE-KTLKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H+                                       +   EE  RL+YVG+TR
Sbjct: 580 LPHQTSID-----------------------------------EDNVEEERRLMYVGITR 604

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L            +  + T    + +   +D   +  K   S  +          +
Sbjct: 605 AQRELTFTMCKERRQYGELIKPTQSRFLDELPFDDVEWEANKKPVSAEERMAKGQAHIAN 664


>gi|219872059|ref|YP_002476434.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165]
 gi|219692263|gb|ACL33486.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165]
          Length = 673

 Score =  264 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 122/719 (16%), Positives = 239/719 (33%), Gaps = 141/719 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +   +          I+ + +L  E     ILK+   L        + +   
Sbjct: 59  AAREMRERVAHSIGKESSR-GLTISTFHTLGFE-----ILKREHKLLGYKSGMTLFDEHD 112

Query: 68  LLS--SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            L+     L +  T  K+++   +   S    + L   Q   +   DR   +        
Sbjct: 113 QLALLKHLLPENVTEDKDLLKLLVATISNWKNDLLLPEQTIVLAKSDRDRAF-------- 164

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                 +    Y+   K    LDF+DLI+    L K+   +     +  Q+I ++L+DE 
Sbjct: 165 -----SHFYDQYQNQLKAYNALDFDDLIMLPTLLFKQFPEAK---ERWQQKIRYLLVDEY 216

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+I+ L                   VGD+ QSIYS+ GA+P+ + R ++   
Sbjct: 217 QDTNTSQYELIKLLVGCD----------GNFTVVGDDDQSIYSWRGAKPENMGRLQQDFP 266

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           K          +I+L  ++RS+  IL   + +    ++       S      + +     
Sbjct: 267 K--------LKVIKLEQNYRSSQRILHCANILIDNNDHLFDKRLFSQLGEGEKLN----- 313

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                         + +  +    A RI            + ++
Sbjct: 314 ------------------------------VIEAKNEEQEAERIV---------GELLAH 334

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              R  + KD  +L R    + L+      L    +I    +          IKD++A  
Sbjct: 335 RFSRKTKYKDYAILYRGNHQSRLLEK----LLIQNRIPYKISGGKSFFAKAEIKDMLAYL 390

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGI 478
           R +++Q+DD +F+ ++ +P        + K+      +  +++E       IQ+      
Sbjct: 391 RLLVNQDDDAAFLRIVNTPKREIGAATLEKLGQLANEKQVSLFEAIFDFELIQRLTPKPY 450

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFL 533
              Q   +++ EL   A    P      +L   +            +        +    
Sbjct: 451 QALQDFARWVVELSDQAVRSEPKSAIQDMLAKIQYETYLYETAATPKSAEMQSRNVQTLF 510

Query: 534 NFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +  +     E +   SL ++++ L       +       ++V++MT+H +KGLE P VF
Sbjct: 511 EWVEKMLEGDELSEPMSLNQVVTNLTLRDMMERGEDDDESDQVQLMTLHASKGLEFPHVF 570

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     +  H+                                       +   EE  R
Sbjct: 571 LIGMEEGILPHQTSID-----------------------------------EDNVEEERR 595

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           L YVG+TRA   L            +  +      + +   +D + ++ K   S  + +
Sbjct: 596 LAYVGITRAQQTLTFSLCKERRQYGEVIKPEISRFLLELPQDDLQWERDKPKLSEQERQ 654


>gi|326423891|ref|NP_760677.2| exodeoxyribonuclease V subunit beta [Vibrio vulnificus CMCP6]
 gi|319999264|gb|AAO10204.2| exodeoxyribonuclease V, beta subunit [Vibrio vulnificus CMCP6]
          Length = 1221

 Score =  264 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 137/982 (13%), Positives = 298/982 (30%), Gaps = 153/982 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLSSFFLT 75
             K  W     ++  + +   ++  +     L    +T+ + ++++  +  +    + F  
Sbjct: 249  LKSAWRAAQPELQTLIEQSDINKRSYTKKSLPDWLETVNRWAESETFDYHYPDKLAKFAQ 308

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
             +   +    T   +     +   L         +          +   A L        
Sbjct: 309  SELLAKTAKGTAPTHPLFEQIDAFLANPASLKAPLL-----AHAIEQCRAWLA------- 356

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
               +AK++   L F+DL+   +  +  +D +  +  +I       +IDE QDT  +Q+ +
Sbjct: 357  ---KAKEQKQRLSFDDLLTRLSAAI-DQDEAQLLASRIRTLYPVAMIDEFQDTDPLQYSI 412

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
               +  +             LF +GD KQ+IY F GA+    ++ +       T      
Sbjct: 413  FSRIYLE--------HPQTGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT------ 458

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
                L  ++RS+A+++  V+++F  P++     +D    I             ++W    
Sbjct: 459  ----LGTNWRSSAEMVAAVNQIFQQPDSPFIYDQD----IPFLPVNASPKAEQRIW---- 506

Query: 316  SQHDSQCNPQQESWTSYFDS--LPQESSASILARRIAYTISNMI-----GTDTIFSNGKK 368
                 Q  P    W    +   + +     ++A   A  I  ++     G  +     ++
Sbjct: 507  -NMAGQKQPALTYWLQECEEKPVAKGEYQQVMADATASQIQRILTLSQQGQASFQQGERQ 565

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              IQA DI VLVR   +  LI             SV  ++R  +      +D+  + + +
Sbjct: 566  HPIQAGDIAVLVRTGSEGRLIKQTLA---KQGIASVYLSNRDSVFLSPVAQDVQRILQAV 622

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L+ EDD +    L   LF      + K+    +  E      +++    +S  + V+  +
Sbjct: 623  LTSEDDRALRAALACELFALDAASLDKLNNDENAWEKALSEFKEYRKLWLS--RGVMPML 680

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              ++              +L  ++G +             L E L        + +  L+
Sbjct: 681  RAVMAKRH------IAERLLTQQEGERTLTDLM------HLAELLQQASNEIDSDHGLLR 728

Query: 549  ELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                 +              +   +  N V+I+T+H +KGLE  +VFL            
Sbjct: 729  WFAQSISDAHNGIGGSDEQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFV--------- 779

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                      ++         ++          ++   K    E  RL+YV +TRA    
Sbjct: 780  ----FAHREASEAKFYDAQTDRTVLDITGSDAALQQADKERLAEDLRLIYVALTRAVYGC 835

Query: 663  IICKHSNTSNEKKSNQ-----RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             I      +                 +V +         +  L     + + I       
Sbjct: 836  FIGAAPLRNGRSTKEPTGVHRSAMGYLVQNGQEGGIATLQQALAGQQTQSDSIVVTSPPT 895

Query: 718  HPEN--TPLEREETIKQLMDEQKIPKKLFS-----------PIKNDINEPYILNPSTIDT 764
             P+    P+          +      +L+              ++D +    +    ID+
Sbjct: 896  LPDERYQPIAAPALALSAQELATPIDRLWRITSYSGLVKQGSHQSDYDASLEVVGFDIDS 955

Query: 765  KGKTN-------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK-LW 816
              +          +S+ +  +  + G  +H L + +        +           K L 
Sbjct: 956  SAEDPQAPVQEVEKSIFTFPRGASAGTFLHSLFEEVEFTQAADSEQNRQVISELMEKNLI 1015

Query: 817  PAKEYKNLLLSITRLLENP-MMTTAM-----SCDSYSEVSVSGKINCPKK---------- 860
              +    L   +  +L  P                  E+     I               
Sbjct: 1016 DLEWLPVLQQLVDTVLSTPLDGKHLYLNQKTPSQRLVEMEFLLPIEVLSAASLNQVIQRH 1075

Query: 861  ---------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHI 896
                             ++ G ID +   Q   ++ ++K++H             +   +
Sbjct: 1076 DPLSARAGDLGFQTVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDAVHLYHGEALQGAMV 1135

Query: 897  PYTHIAQLSIYEKILKDSYPNK 918
             + +  Q  IY   L     ++
Sbjct: 1136 DHRYDLQYQIYALALHRFLRSR 1157


>gi|194367719|ref|YP_002030329.1| DNA-dependent helicase II [Stenotrophomonas maltophilia R551-3]
 gi|194350523|gb|ACF53646.1| DNA helicase II [Stenotrophomonas maltophilia R551-3]
          Length = 730

 Score =  264 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 106/641 (16%), Positives = 205/641 (31%), Gaps = 123/641 (19%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +   A L   +     Y+    +  ++DF +L++  ++LL+       +   
Sbjct: 154 RRPQHIQPEPHDAWLETMRQAYIEYQARCDRAGLVDFAELLLRAHELLRDNPA---LLSH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  D             +F VGD+ Q+IY + GA
Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGD----------SGHVFVVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V    R               I L  ++RSTA+IL   + V +   +  G      
Sbjct: 261 KVENVQGFLRDFP--------GAQTIRLEQNYRSTANILGAANAVIAHNPDRIGK----- 307

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           +LW           + +     + ++ + +       AR I   
Sbjct: 308 ----------------ELW-------TDSGDGEPIDLYAAYNEMDE-------ARYIVER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 338 ARQWVRDGG----------SYTEVAVLYRSNAQSRALEEAL----LSEQVPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R +  +++E   
Sbjct: 384 FERAEIKDALAYLRLLSNRNDDAAFERAVNTPTRGIGDRTLDEVRREARAQGISLWEATM 443

Query: 472 ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  ++EL       +  +    +L   + R+ +        
Sbjct: 444 LVTQGSALAARARNALAGFLVLVNELQAQTLHMTLAERVDHVLARSQLREHWSKESRNAL 503

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYS------SLQELISELEQYPPTI-KRAHSANHNEVR 573
                 D LDE ++   R  + +         + EL++ L        +    A    V+
Sbjct: 504 DSESRTDNLDELVSVASRFVRRADDIEEVGEDMDELVAFLAYAALEAGEGQAQAGEEGVQ 563

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H+AKGLE P+VFL      +F                                   
Sbjct: 564 LMTLHSAKGLEFPLVFLAGLEEGLFPS--------------------------------- 590

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                 +    EE  RL YVG+TRA  +L++    +     + N       + +      
Sbjct: 591 -ARSLEESGRLEEERRLAYVGITRARQKLVLSYAESRRIHGQDNYSLPSRFLREIPRELL 649

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              + K+  S       +        E  PL+    +    
Sbjct: 650 HEVRPKVQVSRPASMGASRVMGHASIEAPPLKLGALVTHPK 690


>gi|254230496|ref|ZP_04923870.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25]
 gi|262392752|ref|YP_003284606.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25]
 gi|151936985|gb|EDN55869.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25]
 gi|262336346|gb|ACY50141.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25]
          Length = 671

 Score =  264 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 97/660 (14%), Positives = 219/660 (33%), Gaps = 125/660 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L++ L    +    +          +       L  +   
Sbjct: 112 DQLALLKELTEKQLDGDKDLLRQLLSCISNWKNDMLTPEQAKARAQGEQQ--QLFAFCFD 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI+    LL+  +    +R +    I ++L+DE QDT+  Q+E+
Sbjct: 170 MYQKQMKAYNALDFDDLILMPVLLLRNHED---VRQRWQNRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 227 VKLIVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + ++       +           A R+         T  + ++        +D
Sbjct: 308 -------DGEKLKVLLAKN-------EEHEAERV---------TGELIAHKFLNRTDYRD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +        + IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----MQNRVPYKISGGTSFFARVEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +   +++
Sbjct: 401 AFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFESSFEMGLEQHLTGRGLENLRRFTQWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLR----- 538
             +   A+     +    ++                +     +  + +  ++ +      
Sbjct: 461 VAIADQAERGDTVEAVRSLVRDIHYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 -NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +Q    +L+E++  L       +     + + V++MT+H +KGLE P V+L+ +   +
Sbjct: 521 NYDQEE-KTLKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHASKGLEFPYVYLIGSEEGI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H+                                       +   EE  RL+YVG+TR
Sbjct: 580 LPHQTSID-----------------------------------EDNVEEERRLMYVGITR 604

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L            +  + T    + +   +D   +  K   S  +          +
Sbjct: 605 AQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEVNKKPVSAEERMAKGQAHIAN 664


>gi|32474455|ref|NP_867449.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
 gi|32444993|emb|CAD74995.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
 gi|327539457|gb|EGF26072.1| ATP-dependent DNA helicase PcrA [Rhodopirellula baltica WH47]
          Length = 671

 Score =  264 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 101/586 (17%), Positives = 189/586 (32%), Gaps = 116/586 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            A      Y+   +    +DF+DL+++T  L  +      IR +   + +H+L+DE QDT
Sbjct: 178 FAASGYRRYQNGLRARGAMDFDDLLLHTETLFAEH---TDIRDREAGKYDHVLVDEYQDT 234

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ + + LTE            R L  VGD+ QSIY++ GA+   +L   +      
Sbjct: 235 NGSQYRITKHLTE----------VHRNLCVVGDDDQSIYAWRGADVSHILSFSKDWP--- 281

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   ++ L  ++RST  IL + + +                    R          
Sbjct: 282 -----DAEVVWLEDNYRSTGAILEMANTLIDFNTVRHDKVLKPFRPSGKRP--------- 327

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                                      + Q       A  +   I ++I  +        
Sbjct: 328 --------------------------RIVQHKDEQAEAETVVREIKHLIENEH------- 354

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             IQ KDI +L R  +   L     R     + +  V        D   ++D++A  ++I
Sbjct: 355 --IQPKDIAILFRTNEQPRLFETELR----KHDVPYVMLGSQSFFDRREVRDIVAYLKWI 408

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ------KFANCGISKF 481
              +D++S + ++ +P    S   +  +      +   V++ +             +   
Sbjct: 409 NQPDDEISLLRVINTPARGLSNKSVRMLVDRAVSKGIPVWQVMNDPESVADLTPAALRGI 468

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFT 536
             + + + ++       +  +    +L       +              +  + E  N  
Sbjct: 469 DQLKQLLGDVQQRLANETMREGLETLLQRTAYADEIARLYDQPDERESRMASIGEVANAV 528

Query: 537 LRNE-QNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLESPVVFLVDT 593
              E +N    L   +S++      +       A  N V ++T+H AKGLE PVV++V  
Sbjct: 529 AAYEDKNEEPDLSGFLSDIALAGREMGSEKDKLAMKNAVWLLTMHAAKGLEFPVVYMVGM 588

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +  H    K  +                                     E  RL YV
Sbjct: 589 EDGILPHSRTLKGGM--------------------------------DEDIAEERRLCYV 616

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           G+TRA DQL +          K         +Y+     +   K +
Sbjct: 617 GITRAQDQLTMSLALTRRKWGKPRPTKPSMFLYEITGQADNPNKYR 662


>gi|322831718|ref|YP_004211745.1| exodeoxyribonuclease V, subunit beta [Rahnella sp. Y9602]
 gi|321166919|gb|ADW72618.1| exodeoxyribonuclease V, beta subunit [Rahnella sp. Y9602]
          Length = 1227

 Score =  264 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 137/1043 (13%), Positives = 294/1043 (28%), Gaps = 155/1043 (14%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            E+   +                + +   +E       K      QA       ++    +
Sbjct: 226  ETVNNLKAAELAALKQDWPQWTQELRTMLE--GAVAAKAVNGKIQARYFNPWLDKLHAWA 283

Query: 71   --SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
                 +    T    +    +++        +  +      ++ R  +      +     
Sbjct: 284  TSDEIIPDLKTGWTRLTPAGLDEGWKQGVAPVHPAISAMETLKTRLESLPDA-RSGLLQH 342

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
              +++   ++  ++K   + F DL+   +  L   D  A +   I  +    +IDE QDT
Sbjct: 343  ACRWIKNRFDLEQQKRAQMGFNDLLTRLDAALS-SDNGARLAEIIRTQFPVAMIDEFQDT 401

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
              +Q+ +  ++          ++  + L  +GD KQ+IY+F GA+    LR +R      
Sbjct: 402  DPLQYRIFDAVYR-----VAENAPEQGLILIGDPKQAIYAFRGADIYTYLRARRD----- 451

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                       L  +FRST  ++  V++VF + EN +             +         
Sbjct: 452  ----TGGRHYTLATNFRSTRAMVASVNQVFELAENRKSGEGAFLFRRGAENQVPFLPVEA 507

Query: 309  QLWEQVVSQHDSQCNPQQESWTSY-FDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +     +   D++       +     + LP+     ++A   A  I  ++      S G 
Sbjct: 508  KGRADTLVIDDAEAAALTLWYPENQAEVLPKNQYVQMMADGCATEIVRLLRLGQQGSAGF 567

Query: 368  K------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                   + +   DI VLV   ++   +      L      SV  +D+  + +     +L
Sbjct: 568  GLPGETLKPVMPGDIAVLVNTGREATAVRV---ALSKRGVRSVYLSDKESIFESAQAGEL 624

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
                    + E+D      L +P  N S + + ++     E                  +
Sbjct: 625  QYWLAACAAPENDRLLRAALATPSLNLSWEALDRLNQDESE------------------W 666

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT-- 536
            +  ++    L    +          ++      ++ + R     +     L E L     
Sbjct: 667  ERYVQQFQALRTCWRKQGILPMLRRLMWEFDVPRRLLGRGDERALTDLLHLSELLQQASV 726

Query: 537  -LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             L  E      L E   +  Q     K    ++   V+++TVH +KGLE P+VFL    +
Sbjct: 727  QLDGEHALIRYLAEQCQDEHQGGDARKLRLESDAELVKVVTVHKSKGLEYPLVFLPFACA 786

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                 K    +    +  +               +   + +    +    E  R  YV M
Sbjct: 787  FRAVKKQDSPLKWHTAEGELEVAL----------SATDEQLAQADRERLGEDLRKFYVAM 836

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TR+   L +        EK ++   ++              +   T++I        + +
Sbjct: 837  TRSRYALWLGMAPLKEFEKSASGYLFHGGDAIDADALPASLQALETDTIRAWPLPVTDGA 896

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
             +  E    E          +                    + P T++ + +  +ES   
Sbjct: 897  IYRSEQLLPELGPRPPLRTHKGPRWWVSSFSGLQIAPAGSYMVPETLNREPRGEIESAAQ 956

Query: 776  D-------------------------------NQTFNRGLIIHKLLQV--------IFTL 796
            D                                +    G  +H LL+         +   
Sbjct: 957  DSYLEDQKVFVEDKEPVPGLLQPMTGENLYAFPRGPAPGNFLHGLLEWAGDEGFAALAKD 1016

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCDSYSEVSV 851
            P            T+  + W       L   +T+ L  P      +          E   
Sbjct: 1017 PAKIADQVARRCNTRGWEKWIVPLSGWLTALLTQPLALPDGETFTLAELPPYQVEMEFWF 1076

Query: 852  S-----------------------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
            S                         +     + ++ G ID +       ++ +YK++  
Sbjct: 1077 SLTKVSTVRLDKLVQQYTLEGAERAPLLAEDLNGMLKGFIDLVFEHDGRYYVLDYKSNWL 1136

Query: 889  VPQ---------EIEHIPYTHIAQLSIYEKILKDSYP--------NKSLVCLLI-YVSEP 930
                              + +  Q S+Y   L             ++ +   +  ++   
Sbjct: 1137 GDDASGYDQENMTQSMREHRYDLQFSLYLFALHRLLKSRIPDYDYDRHIGGAVYLFLRGS 1196

Query: 931  KV------FIIPQNKLNKAFAEI 947
                       P   L +    +
Sbjct: 1197 HAPGNGVCVQRPDKALMEQLDAL 1219


>gi|86145658|ref|ZP_01063988.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. MED222]
 gi|85836629|gb|EAQ54755.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. MED222]
          Length = 1224

 Score =  264 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 153/1008 (15%), Positives = 314/1008 (31%), Gaps = 158/1008 (15%)

Query: 12   SYELIYKDLWP-LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            S   +  D+   L    +    + +S  ++T +   L K + L+ A   +   +  +L+S
Sbjct: 205  SPASLLADVNRYLTGSPLKLTVEAMSGDLQTLHNQNLDKVKQLK-ALWCESEADFLALIS 263

Query: 71   SFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKS---------------QDEF 107
               + ++   +K++ T         + +       +KL+K                Q   
Sbjct: 264  GSDVNKRSYTKKSLPTWLEAVTAWAQSDTHDYQFPDKLEKFSQATLIEKTPKGTAPQHAV 323

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +  + F                 +      +AK++   L F+DL+          D  +
Sbjct: 324  FEAIENFLNSPANLKAPLLAHAITHCRTMLAKAKQQKQWLSFDDLLTQ-LSASIDVDEQS 382

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             +  +I       +IDE QDT  +Q+ +   +  D        +    LF +GD KQ+IY
Sbjct: 383  LLVERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLD--------NPQCGLFMIGDPKQAIY 434

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F GA+    ++ +       T          L  ++RS+AD+++ V++VF   ++    
Sbjct: 435  GFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVSAVNQVFMNSDSPFIY 484

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
             +D    I             + W        +     QE+       LP+      +A 
Sbjct: 485  DQD----IPFLPVAASPSADKRQWVMNGETQHALTFWLQEAEDKP---LPKGEYHKAMAE 537

Query: 348  RIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  I  ++           +  K+  + A DI VLVR   +  LI      L      
Sbjct: 538  ATASQIQTILTASQNQQAYFDNGKKQHAVNAGDIAVLVRTGSEGRLIKN---ALSEQGIA 594

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            SV  ++R  +   L  +D+  L + +L+ E+D +    L S LF      + ++      
Sbjct: 595  SVYLSNRDSVFTSLVAQDIQRLLQAVLTPENDRALRASLASELFALDAASLDELNNDEVV 654

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             E V    +++    +   + V+  +  +I              +L  + G +       
Sbjct: 655  WENVVNEFREYRKLWLQ--RGVLPMLRSVISKRH------LAERLLEEENGERSLTDLM- 705

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMT 576
                  + E L    +   + Y  L+ L   +              +   +  N V+I+T
Sbjct: 706  -----HIGELLQQARQELDSDYGLLRWLAEAISDAQNGLGGSEDDIQRLESERNLVQIVT 760

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE  +VFL    S                 ++          +          +
Sbjct: 761  IHKSKGLEYDLVFLPFVAS-------------YREASEGKFYDHDSDTTVLDITGSDSAL 807

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-----RTWYDMVYDSFHN 691
                K    E  RL+YV +TRA     I                        +V +    
Sbjct: 808  AQADKERLAEDLRLIYVALTRAVYGCFIGMAPLRKGRSTKEPTGVHLSAMGYLVQNGQEQ 867

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP----- 746
                    L+    K+  +    +    E+  ++ E+  + L   +       +      
Sbjct: 868  GIAELNQALSAIEGKNSSVLLSETPTAHEHVFVQTEQVSEDLHASELKASIDRAWRITSY 927

Query: 747  --------IKNDINEPYILNPSTIDTKGK-------TNLESLLSDNQTFNRGLIIHKLLQ 791
                      +  +    ++   ID+  +           S+ +  +    G  +H L +
Sbjct: 928  SGLVKQGSHGSSHDATIEVSGFDIDSADEQDESELIEPERSIFTFPRGARPGTFLHTLFE 987

Query: 792  VIFTLPEHKRK---NFITSYCT-KNAKLWPAKEYKNLLLSITRLL---ENPMMTTAMSCD 844
             +        +     IT     +  +L      + L+ ++       +N  ++   S  
Sbjct: 988  DVEFTEPATSEHNTQVITHLLESEQYELEWLPVLQQLVDTVLNTALDGKNLKLSEKDSTQ 1047

Query: 845  SYSEVSVSGKINCPKK-------------------------DIIISGRIDQISISQQNIF 879
               E+     I                                ++ G ID +   Q   +
Sbjct: 1048 RLVEMEFLLPIEVLAASELNQTIQYHDPLSAKAGDLGFQTVQGMLKGFIDLVFEHQGKYY 1107

Query: 880  IFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKDSYPNK 918
            + ++K++H          E +      + +  Q  IY   L     ++
Sbjct: 1108 VLDWKSNHLGDDVAVYHGEALKSAMADHRYDLQYQIYALALHRFLRSR 1155


>gi|113869553|ref|YP_728042.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16]
 gi|113528329|emb|CAJ94674.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16]
          Length = 726

 Score =  264 bits (673), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 100/612 (16%), Positives = 186/612 (30%), Gaps = 126/612 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    ++ K    + + L+DE QDT+
Sbjct: 199 AALVYRNYVATLHAYQAVDFDDLIRLPAELFARNEA---VQLKWQNRLRYFLVDEYQDTN 255

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L         +H       AVGD+ Q+IY + GA    +   +        
Sbjct: 256 ACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNLRGLQTDFP---- 305

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +           S           G    + 
Sbjct: 306 ----DLKVIKLEQNYRSTVRILEAANAVIANNPKLFDKKLWSEH---------GMGDPIA 352

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 353 IHPM--------------------------NDEEHEAESVVFR---------LSAHKFER 377

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      L   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 378 RAQFRDYAILYRGNHQARLFEQILR----RERIPYVLSGGQSFFDKAEIKDICAYLRLIA 433

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + T   +   +++E         K     +   +
Sbjct: 434 NPDDDPAFIRAITTPRRGVGNTTLEVLGTFAGQAKVSLFEAAMMGGIEGKLQPRQLEPLR 493

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNF--- 535
              + +  L   A           ++            F             EFL++   
Sbjct: 494 VFCESMVRLADRAAKDPATVVLDDLMEGIHYEAYLYDSFDERQAQSRWTNTLEFLDWLKR 553

Query: 536 -------TLRNEQNSYSSLQELISE----LEQYPPTIKRAH----SANHNEVRIMTVHTA 580
                      E   + +     SE    LE        +       + + VR+ T+H +
Sbjct: 554 KGTKPEGAEGEEATGFDNADGFGSEGKNLLELTQTVALMSMLEGREEDPDAVRLSTLHAS 613

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE P VFLV     +  H                                    + + 
Sbjct: 614 KGLEYPHVFLVGVEEGILPHCRED--------------------------------EDMS 641

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
               EE  RL+YVG+TRA   L +         +++        + +    +      + 
Sbjct: 642 DEKIEEERRLMYVGITRAQRSLHVSWCKKRKRARETYSCQPSRFIGEMKLEEAPAPVDET 701

Query: 701 TNSINKDEWIAY 712
                KD   A 
Sbjct: 702 PAMSPKDRLGAL 713


>gi|251793588|ref|YP_003008317.1| ATP-dependent DNA helicase Rep [Aggregatibacter aphrophilus NJ8700]
 gi|247534984|gb|ACS98230.1| ATP-dependent DNA helicase Rep [Aggregatibacter aphrophilus NJ8700]
          Length = 671

 Score =  264 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 111/644 (17%), Positives = 216/644 (33%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ ++  DL +  + +  +    +        + +          +    Y +  
Sbjct: 118 KELTADLLQEDKDLLRTLINRISNWKNDLCSPQQAMILARDNQE--QTFAHCYDRYNKQL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+      +R K  ++I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQN---TEVRSKWQEKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +               +I+L 
Sbjct: 233 D----------RARFTVVGDDDQSIYSWRGARPQNMVRLRDDFPA--------LQVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + +    ++       S      +                       
Sbjct: 275 QNYRSSQRILHCANILIDNNDHVFDKKLFSNLGEGEKL---------------------- 312

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                         + +  +    A R+            + ++      Q +D  +L R
Sbjct: 313 -------------QIIEAKNEEHEAERVV---------GELIAHRFIAKTQYRDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKIL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
            +P        + K+ +   E           +E IQ+         Q   ++I EL   
Sbjct: 407 NTPKREIGTATLEKLGSLAQEKHVSLFEAIFDFELIQRVTPKAYDALQKFARWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L +    +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLASLHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDEFNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           SL ++++ L       +     + ++V++MT+H +KGLE P VFL+     +  H+    
Sbjct: 527 SLNQIVTRLTLRDMLERGEEEDDSDQVQLMTLHASKGLEFPHVFLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA   L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQQNLWFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +CK      E    + + + +            K  LT    + 
Sbjct: 612 LCKERRQFGELIRPEPSRFLLELPENDLQWERDKPPLTAEQQQA 655


>gi|229816023|ref|ZP_04446344.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM
           13280]
 gi|229808337|gb|EEP44118.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM
           13280]
          Length = 950

 Score =  264 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 94/707 (13%), Positives = 191/707 (27%), Gaps = 130/707 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +    E   +    +DF+DL++ T +LL+       +  K  +   +I +DE QDT+
Sbjct: 247 AAQVYLELERRLRAANAMDFDDLLVRTLELLRT---RPEVLEKYQERFRYISVDEYQDTN 303

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+E+   L   +          + L  VGD+ QSIYS+ GA+   +L  ++  ++   
Sbjct: 304 HVQYEIANLLAAKY----------QNLMVVGDDDQSIYSWRGADISNILDFEKDFKQ--- 350

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +++L  ++RST  IL   + V       +                        
Sbjct: 351 -----AKVVKLEQNYRSTGHILAAANAVVRNNSQRKEKRLF------------------- 386

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                        + ++       D   +        R IA  I  +    T        
Sbjct: 387 ---------TDLGDGEKIQAYQASDERDEG-------RWIASEIEKLRAAGT-------- 422

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D+ V  R    + ++  +         +           D   I+D+MA  + I+
Sbjct: 423 --SYDDMAVFYRTNAQSRILEDMF----LRAGVPYKIVGGTRFFDRAEIRDVMAYLKMIV 476

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ-------KFANCGISKF 481
           +  D++S   ++ +P        I KI    R    + ++  +        F+       
Sbjct: 477 NPADEMSVKRVINTPRRGIGSTSIGKIEDLARMNACSFFQACELAIAETGMFSAKVRHAL 536

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
              +  + E   +       D   +I+      Q F +    E     + + EFL     
Sbjct: 537 GDFVNIVREGRRMDGELK--DVVEMIVDKSGLVQAFRAEGTMEAESRAENIQEFLGVAAE 594

Query: 539 NEQNSYS---SLQELISELEQYPPTIKRAHSANHNEV---RIMTVHTAKGLESPVVFLVD 592
            E+       +L+ L  EL           +     +       +  A  + S  +    
Sbjct: 595 FEETHEDIEGTLESL-EELRAAGVADVPEVAPMPAGIAMPMSTAMTAATSVLSDALANPS 653

Query: 593 TGSQVFSH----------------------------------------KHIKKMHIMPSL 612
               +  +                                         H   M  + S 
Sbjct: 654 MAPALTPNAAALAAVEVERMYGPLACKALPALLEWLALRSDLDALAGESHAITMMTVHSA 713

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                  +++   +               +  EE  RL YV +TRA  +L +   +    
Sbjct: 714 KGLEFPAVFVAGMEEGIFPHVAGWSDDDPAKLEEERRLAYVAITRARKRLFLTYAATRRT 773

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
              +        V +    +     I  +           +           +       
Sbjct: 774 YGSTQANPRSRFVNEIPAENIEFSGIGSSGFEGTGWEKRGDRRGTFGSGQGSDMYGGRVF 833

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
               +  P        +          S      +          + 
Sbjct: 834 GSYTRSTPGTQRRTAISPDAGRVGTAGSDRGAASRKPATFGSGAPRP 880


>gi|195941740|ref|ZP_03087122.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia
           burgdorferi 80a]
          Length = 659

 Score =  264 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 188/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSND---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGANYNNMLQFEKDY-------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS+ +IL V + V    +N +  +  S+                    
Sbjct: 264 -NVKEIKLEQNYRSSKNILNVANSVILNNKNRKEKTLWSSKMCSK--------------- 307

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +   +   S        
Sbjct: 308 -------------VIDVFIFEDEIQES-------EFVANQIIELSRLEDFKSKK------ 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 342 ---IGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 394

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +                     
Sbjct: 395 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDITFSFTNISSYDKALNKQV 454

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 455 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 514

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L               N  + +MTVH+AKGLE   V
Sbjct: 515 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEEAENININLMTVHSAKGLEFDYV 574

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 575 FFIAVEDNIIPHHR---------------------------------IIEDSEVDLEEER 601

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D L+I   +    +++   +     + 
Sbjct: 602 RVFYVALTRAKDSLVITMANKRKKDRQIFDQLPSRFIS 639


>gi|283778550|ref|YP_003369305.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
 gi|283437003|gb|ADB15445.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
          Length = 800

 Score =  264 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 107/718 (14%), Positives = 234/718 (32%), Gaps = 91/718 (12%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                   + +                A+ L+  ++   + E FS+  +    +      
Sbjct: 81  AADEMRGRLERLAPRQAVWMGTFHRFCARMLRSYAELVGLRENFSIYDTDDSRKILQIAL 140

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
           +    ++   SPD   +        +   DR+      +   A   + + +   Y++   
Sbjct: 141 DEEGIDLTHTSPDAIAQAISWAKNNLVTADRYE----PRRGHAIGGIVEKVYPTYQKLML 196

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           ++  +DF+DL+++   LLK+      +R ++D+   +I++DE QDT+L Q+ ++R+L+ D
Sbjct: 197 RSSAVDFDDLLVHVAILLKENPE---VRRQLDERYRYIMVDEYQDTNLAQYTIVRALSID 253

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        L   GD  QSIY + GA    +L  ++   K          ++ L  
Sbjct: 254 ----------HPNLAVTGDPDQSIYGWRGANLSNILEFEKDYPK--------VKVVRLEQ 295

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RST  IL + D++       +     +            Q   V+L      + +   
Sbjct: 296 NYRSTKSILHIADQLIRHNIRRKEKDLFTDNP---------QGNRVRLATFPTQRDE--- 343

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                                  A  IA  I++ + T            + +D  +  R 
Sbjct: 344 -----------------------AETIAEEIAHEVRTGKR---------RPRDFAIFYRT 371

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +  I    R       I     +         IKD++A  + + +   D + + ++ 
Sbjct: 372 NALSRQIEHALRE----QVIPYQIVNGLEFYQRKEIKDVLAYLQLVNNPRSDAALLRIIN 427

Query: 443 SPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIA 495
           +P     +  I KI    R     + +  +        A          +  + +LI   
Sbjct: 428 TPTRGIGKSTIAKIQEVARDRAIPLLDAARMAGTISGLAKKSAVAVAKFVAML-DLIGTK 486

Query: 496 QFCSPHDFFTLILGAKKGRQQFI---SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
                 +    +L     R+      +   +E +  L+E L      +  +      L  
Sbjct: 487 ATAPVEELVGYVLTETGYREVLENSEAEEDHERLANLEELLTAASEFDLRNPGG-AGLEQ 545

Query: 553 ELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            LE            ++ ++V +MT+H AKGLE P V++V     +  H+  ++      
Sbjct: 546 FLEDSSLVADTDAFESDSDKVTMMTLHAAKGLEFPAVYIVACEEGLLPHERSRRDEEK-L 604

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             +   + + I ++     +     +  +            + + R   +LI        
Sbjct: 605 EEERRLLFVGITRAMQDLTLTWAQYRMFRGQQAPAVASSFLMELPRHEMELI----GGNM 660

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
               + +   +D        D+ ++          D  +  + +   PE     + + 
Sbjct: 661 GRGSAPRYLAWDEESQLSPEDDDLEFPPREQDALIDAPMYDDVNQLEPEEMQTRKAKE 718


>gi|188532376|ref|YP_001906173.1| DNA-dependent helicase II [Erwinia tasmaniensis Et1/99]
 gi|188027418|emb|CAO95265.1| DNA helicase II [Erwinia tasmaniensis Et1/99]
          Length = 720

 Score =  264 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 92/530 (17%), Positives = 174/530 (32%), Gaps = 82/530 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R            
Sbjct: 229 QYAWIRMLAGD----------TGKVIIVGDDDQSIYGWRGAQVENIQRFLNDFPAAG--- 275

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 276 -----TIRLEQNYRSTNNILKAANTLIANNNGRLGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  +    F+ L +       AR +   I   +              
Sbjct: 310 -------TEDSDGEPIAIYCAFNELDE-------ARFVVNRIKVWMEKGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R I ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQTSMPYRIYGGMRFFERQEIKDSLAYLRLISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++        +  A    S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARERQLTLWQTARALLQEKALAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L H       H     ++        +    G +    I+ L+E +N T +   
Sbjct: 462 TELVDSLAHETSEMPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H AKGLE   VF+V     +F 
Sbjct: 522 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTMHAAKGLEFMQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +   +                    +      ++  +   K      +R
Sbjct: 582 SQMSLEEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSR 631


>gi|134093547|ref|YP_001098622.1| DNA helicase II [Herminiimonas arsenicoxydans]
 gi|133737450|emb|CAL60493.1| DNA helicase II [Herminiimonas arsenicoxydans]
          Length = 762

 Score =  264 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 101/651 (15%), Positives = 202/651 (31%), Gaps = 148/651 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y++  ++  V+DF +L++ T +LL +      +R        HIL+DE QDT+ +
Sbjct: 169 ELYEIYDQQCQREGVVDFAELLLRTYELLSRN---QPLREHYQSRFKHILVDEFQDTNNL 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ +            +   +FAVGD+ QSIY+F GA    +   +R  +      
Sbjct: 226 QYNWLKLMAG----------TQGAVFAVGDDDQSIYAFRGANVGNMSAFEREFKVE---- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               ++I+L  ++RS   IL   + + +      G +  +           G    V+++
Sbjct: 272 ----NLIKLEQNYRSHGHILDTANTLIANNTKRLGKNLHTD---------AGHGEQVRIF 318

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                     + +S    A+ I     ++I              
Sbjct: 319 --------------------------ESTSDLQEAQWIIEETKSLIAEGG---------- 342

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VL R    + +I            I           +   +K  +A  + + + 
Sbjct: 343 TRSEIAVLYRSNAQSRVIEHAL----FSAGIPYRVYGGQRFFERAEVKHAIAYLQLMDNL 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            +D +F+ ++  P        + ++    R    ++Y  +   +    +     +K I  
Sbjct: 399 HNDSAFLRVVNFPTRGIGARSLEQLQDAARQYGISLYAAVPYISGKAGTSLGAFVKLIEG 458

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
                Q     +   ++L A      +     G + I+ L++ ++               
Sbjct: 459 ARFETQHLPLPEMVQVVLDASGLITHYQKEKEGADRIENLEQLVSAATLFVSEEGFGHDA 518

Query: 550 -------------------------------------LISELEQYPPTI-KRAHSANHNE 571
                                                L + L             A  + 
Sbjct: 519 PALMGPTSKQMAGPAITTQDGIEVLDADAPLPAVMSPLSAFLSHASLEAGDNQAQAGQDA 578

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +++MTVH+AKGLE   VF+      +F H++ +K                          
Sbjct: 579 LQLMTVHSAKGLEFDAVFITGLEEGLFPHENSQKEEGGVEEERR---------------- 622

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                             L+YV +TRA  +L I      S  +  + +  Y+M    F  
Sbjct: 623 ------------------LMYVAITRAKRRLYIS----FSQTRMLHGQMRYNMKSRFFDE 660

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                   L+  ++      Y       E+        I Q + +  I  +
Sbjct: 661 MPEDSLKWLSPKVHPPAHQWYAHPKAAWEDALGAGSNRIAQNIVKSDIGWR 711


>gi|110598179|ref|ZP_01386456.1| exodeoxyribonuclease V, beta subunit [Chlorobium ferrooxidans DSM
            13031]
 gi|110340193|gb|EAT58691.1| exodeoxyribonuclease V, beta subunit [Chlorobium ferrooxidans DSM
            13031]
          Length = 1206

 Score =  264 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 134/903 (14%), Positives = 273/903 (30%), Gaps = 149/903 (16%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    ++ +  +     +       L  + + +    K+   V  F+DL+ +    L   
Sbjct: 299  QHPLFQLCESLSALVFERFVALKFELIAFYHENMPLRKRARNVRFFDDLLADLYHALDSE 358

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            ++++     +  +    LIDE QDT  +Q+E+ R +            S   LF +GD K
Sbjct: 359  ELASV----LRTQYRAALIDEFQDTDPVQYEIFRKIYG---------GSGAPLFLIGDPK 405

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IYSF GA+    LR     +++            L  ++RS + +L   + +F     
Sbjct: 406  QAIYSFRGADIFAYLRAAEEVEEK--------RRFTLTSNWRSDSSLLDAFNTIFHQQRL 457

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ---ES 340
                       +    SR            V  +  +   P Q       +        S
Sbjct: 458  PFLFEGIVYHPLTPGESREASG-------VVERREGAVERPMQICLMDPGNESGTFTTGS 510

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKR-VIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            +    A   A  I  ++      S+      + A DI V+VR  +   ++    R     
Sbjct: 511  AERFAAEACASEIEQLLSDGFNGSSFPPDCALNAGDIAVIVRTHRQARMVQSTLRS---- 566

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              IS V      +      +++  L   +     +      L + +   S +DI ++   
Sbjct: 567  RGISGVMRSDESIFVSSEAEEVRILLAALSDPGAETLVRTALVTDILGLSGNDIDRLNRD 626

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                    E   ++    + +          +   ++F S       +L    G ++  +
Sbjct: 627  ETLWIPCLERFHRYHRIWLER--------GFMAMASEFMSNEAVRARLLRFSDGERRLTN 678

Query: 520  RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY---PPTIKRAHSANHNEVRIMT 576
                       E L+      +    +L    SE           +    ++   VRI+T
Sbjct: 679  VL------HCFELLHREAEERRLGVEALASWFSERIAAGESADEYQIRLESDEAAVRIVT 732

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            VH +KGLE PVVF       + + K + + H                     +  +++  
Sbjct: 733  VHVSKGLEYPVVFAPFLFGGINAGKDVVQFHDEKG----------KLVKDFGSGTIAENR 782

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN-EKKSNQRTWYDMVYDSFHNDERV 695
               +K T  E  RLLYV +TRA  +  +         +K+S   +    ++ +    +R 
Sbjct: 783  SAAEKETLAENLRLLYVALTRAKYRCYLFSARVVDGRKKESTLLSPLTYLFHASEEAKRS 842

Query: 696  K------------------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                                ++LT             +    E  P++      +     
Sbjct: 843  PGLVRAVTESVRALGAGEMAMQLTALAEASGGSIGVRTIEAAEAPPIKHLPAPGEEEIFT 902

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKT-------------------NLESLLSDNQ 778
             +       I+         + S  + K                         S+ S  +
Sbjct: 903  PVVHSFRGHIERLWRVSSFTSFSRHEPKAAELPDRDDREGAMVQAAPQLNGERSIFSFPR 962

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--- 835
                G+++H + + +           + +  +     +  +    L+  IT  L  P   
Sbjct: 963  GAGAGIMMHSIFEKLDFASPTGETIALLAEQSLARHGFAGEWLPVLIRMITDTLNTPLSS 1022

Query: 836  -----------------MMTTAM-----SCDSYSEV--------------SVSGKINCPK 859
                              +         S  +  EV              SV+G ++  +
Sbjct: 1023 GTGFFTLGALKPRSWVTELEFFFPLRQVSAKTLGEVLKRYGACSEGVDLLSVAGVLDFRE 1082

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKI 910
               ++ G ID +       ++ ++K++H      E+   +         +  Q  +Y   
Sbjct: 1083 VKGMLMGFIDMVFEQDGRYYLLDWKSNHLGNSVEEYRSDSLRRAMQENLYPLQYLLYIVA 1142

Query: 911  LKD 913
            L  
Sbjct: 1143 LNR 1145


>gi|224531919|ref|ZP_03672551.1| ATP-dependent DNA helicase PcrA [Borrelia valaisiana VS116]
 gi|224511384|gb|EEF81790.1| ATP-dependent DNA helicase PcrA [Borrelia valaisiana VS116]
          Length = 658

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 106/578 (18%), Positives = 193/578 (33%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 165 IFRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 221

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 222 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGASYNNMLQFEKDYS------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 264 --VKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          IA  I  +   +           Q
Sbjct: 307 -------------VIDVFIFEDEIQES-------EFIASQIIELSKGE---------GFQ 337

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           +K+I VL+R       +  + R       I    +          IKD+++    I++ +
Sbjct: 338 SKNIGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 393

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +   A                 
Sbjct: 394 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDIAFSFANISSYEKALNKQV 453

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     +S               +
Sbjct: 454 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 513

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L             + N  + +MTVH+AKGLE   V
Sbjct: 514 EGFLSIIKNWECKQFGELKDLSSFLNYIVLQSNEVSEESENININLMTVHSAKGLEFDYV 573

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H                                   I    +   EE  
Sbjct: 574 FFIAVEDNIIPHHR---------------------------------IIEDSEVGLEEER 600

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA + LII   +    +++  ++     + 
Sbjct: 601 RVFYVALTRAKESLIITMANKRKKDRQIFEQLPSRFIS 638


>gi|261866905|ref|YP_003254827.1| ATP-dependent DNA helicase Rep [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412237|gb|ACX81608.1| ATP-dependent DNA helicase Rep [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 671

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 107/650 (16%), Positives = 216/650 (33%), Gaps = 124/650 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +    + +    L+E + +  +    +        + +          +   
Sbjct: 112 DQMALLKELTADVLQEDKGVLRELINRISNWKNDLCSPQQALGLARDNKE--QTFAHCYD 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  +    LDF+DLI+    L K+    A +R K  ++I ++L+DE QDT+  Q+E+
Sbjct: 170 RYNKQLRAYNALDFDDLIMLPTLLFKQN---AEVRLKWQEKIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I+ L  +                VGD+ QSIYS+ GA P+ ++R +              
Sbjct: 227 IKLLVGE----------RARFTVVGDDDQSIYSWRGARPQNMVRLRDDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + +    E+       S      +                 
Sbjct: 269 RVIKLEQNYRSSQRILHCANILIDNNEHVFDKKLFSNLGEGEKL---------------- 312

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                               + +  +    A R+            + ++        +D
Sbjct: 313 -------------------QIIEAKNEEHEAERVV---------GELIAHRFIGKTHYRD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L+  +        +I    +          IKD+MA  R +++Q+DD 
Sbjct: 345 YAILYRGNHQSRLLEKIL----MQNRIPYKISGGTSFFSRTEIKDMMAYLRLVVNQDDDA 400

Query: 436 SFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYI 488
           +F+ ++ +P        + K+ +  + +  +++E I  F              Q   ++ 
Sbjct: 401 AFLRIVNTPKREIGTATLEKLGSLAQEKHISLFEAIFDFELLQRVTPKAYDALQKFARWT 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN---- 539
            EL    Q   P      +L +    +       +          +    ++        
Sbjct: 461 VELNDEIQRSEPERAVRSMLSSLHYEEYLYEYATSPKAAEMQSKNVATLFDWVAGMLKGD 520

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E N   +L ++++ L       +     + ++V++MT+H +KGLE P VFL+     +  
Sbjct: 521 EFNEPMNLNQIVTRLTLRDMLERGEEENDGDQVQLMTLHASKGLEFPHVFLIGMEEGILP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 581 HQTSID-----------------------------------EDNVEEERRLTYVGITRAQ 605

Query: 660 DQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             L   +CK      E    + + + +            K  L+    + 
Sbjct: 606 QNLWFSLCKERRQFGELIRPEPSRFLLELPENDLQWERDKPPLSAEQQQA 655


>gi|330721132|gb|EGG99258.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC2047]
          Length = 672

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 105/669 (15%), Positives = 216/669 (32%), Gaps = 129/669 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +    +     F    +  L ++  P +   T+E+  ++       K +  E  +  ++ 
Sbjct: 98  KHLDIKPGFSLFDAHDALTLIKELIPTEGDQTRELASQAQHQISNWKNAMLEPEQALEQA 157

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            T                +   Y    +    +DF+DLI+    L         +  +  
Sbjct: 158 KTGNDMT--------IAKIYGLYTRMLRAYNAVDFDDLILLPTRLF---IEQPEVLDRWQ 206

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +I ++L+DE QDT+  Q+ +++ L              +    VGD+ QSIY++ GA P
Sbjct: 207 NKIRYLLVDEYQDTNESQYLLVKQLVG----------VRQAFTVVGDDDQSIYAWRGAVP 256

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + ++R +    +          +I+L  ++RS   IL   +KV +  E+           
Sbjct: 257 ENLVRLQTDFPR--------LEVIKLEQNYRSCGCILKAANKVIANNEHVFEKK------ 302

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                          LW  +                     + Q +     A RIA  I 
Sbjct: 303 ---------------LWCDIGFGDSI--------------RILQCADEEAEAERIATEI- 332

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                    S   ++  + +D  VL R    + ++    +     +++    +      D
Sbjct: 333 --------VSQRLQKRSKFEDFAVLYRGNYQSRILELKLQ----QFQVPYHISGGTSFFD 380

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF 473
              +KD++A  R I++ EDD +F+ ++  P        +  +         ++Y    + 
Sbjct: 381 KAEVKDMLAYLRLIVNPEDDTAFLRVINVPRRQIGSSTLEVLGQYATERETSLYNACDEL 440

Query: 474 A------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG----- 522
                     + K +    ++  +          D    ++                   
Sbjct: 441 GLEQHLKPQHLDKLRRFRHWLDSVTQRWHQLEFDDVVKEMIDELDYDSWLEQNSSSRGVA 500

Query: 523 NEVIDVLDEFLNFTL-----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
           +  +  +   ++         + Q+  + L + +S L       ++   A+ N+V++MT+
Sbjct: 501 DRRMANIWYLMDSIKNSLPEDSLQDPVADLADSLSRLMLRDMLERQQDEADTNQVQLMTM 560

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE P VF++    ++  H                                     
Sbjct: 561 HAAKGLEFPHVFIMGLEEELLPH-----------------------------------RN 585

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
            ++    EE  RL YVG+TRA   L +          +    T    + +    D   + 
Sbjct: 586 SIETDNIEEERRLFYVGITRAQKTLSLTMAKKRKQFGEVFDTTASRFLDELPEEDLEWEG 645

Query: 698 IKLTNSINK 706
               N   K
Sbjct: 646 NDNANPEAK 654


>gi|260771453|ref|ZP_05880378.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972]
 gi|260613579|gb|EEX38773.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972]
          Length = 1214

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 139/908 (15%), Positives = 268/908 (29%), Gaps = 154/908 (16%)

Query: 101  KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
               +    +    F    +            +      +AK     L F+DL+   +  L
Sbjct: 306  DAPRHAVFEAVQAFLAEPVSLEAPLLAHAITHCRTLLAKAKASKQWLSFDDLLTQLSASL 365

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
               D    +  +I       +IDE QDT  +Q+ +   +                LF +G
Sbjct: 366  DGDDEGT-LAARIRTLYPVAMIDEFQDTDPLQYSIFSRIY--------LPHPQCGLFMIG 416

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++VF++
Sbjct: 417  DPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVAAVNQVFTL 466

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQE 339
            P++      D+       S+     G   L        + +  P    W+   D+ + + 
Sbjct: 467  PDSP--FIYDNDIPFLPVSASPKAGGRAWLL-------NGEVQPALTYWSMAADAPVTKG 517

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRV--------------IQAKDILVLVRKRKD 385
            +    +A   A  I  ++          +                IQA DI VLVR   +
Sbjct: 518  AYLDTMAAATASQIQTILTAAQQGKAQFRHGGAIQASDSIQAGDSIQAGDIAVLVRTGNE 577

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              LI      L      SV  ++R  +       D+  L + +L+ ++D +    L SPL
Sbjct: 578  GRLIKE---ALAQQGIASVYLSNRDSVFTSTIAPDMQRLLQAVLTPDNDRAMRAALASPL 634

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
            F  +   +  +    +E E      +++    + +          L  +    S      
Sbjct: 635  FALNAQQLDALNNDENEWENALNEFKQYRQLWLDR--------GVLPMLRAVLSLRHIAE 686

Query: 506  LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PP 559
              L    G +Q            L E L    +   + +  L+ L   +           
Sbjct: 687  RWLEEPDGERQLTDFM------HLSELLQQATQEIDSDHGLLRWLAQSIADAEQGLGGSD 740

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
               +   +  N V+I+T+H +KGLE  +VFL                      ++     
Sbjct: 741  EAIQRLESERNLVQIVTIHKSKGLEYELVFLPFV-------------LSYREASEGKYYD 787

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                Q+    +     I+   K    E  RL+YV +TRA     I      +        
Sbjct: 788  ASSGQTLLDISGQEASIQQADKERLAEDLRLIYVALTRAVYGCFIGVAPLRNGRSSKEPT 847

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
              +         + +   + L              +   P   P    E++   + E   
Sbjct: 848  GVHHSALGYLLQNAQQGGLALLAESLHQHTALACVAVTEPPAVP----ESVFVPLAEPLP 903

Query: 740  PKKLFSPIKNDINEPYILNPSTI--------------------------DTKGKTNLESL 773
            P    S          I + S +                          +        S+
Sbjct: 904  PLSARSLSHEIDRLWRITSYSGLVKQGSHQHDASFEIGGFDVDSADEHDEAALAEPERSI 963

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKRKN---FITSYCTKNAKLWPAKEYKNLLLSITR 830
             +  +    G  +H L + +        ++    I     +      A+    L L +  
Sbjct: 964  FTFPRGAQPGTFLHSLFEEVEFTQPASDEHNTRIIADLMERE--QIDAEWLPVLQLLVDT 1021

Query: 831  LLENPM------MTTAMSCDSYSEVSVSGKINCPKKDII--------------------- 863
            +L  P+      +         +E+     I       +                     
Sbjct: 1022 VLRTPLNGKDLCLNQKAPHQRLTEMEFLLPIEVLSAPALNRVVQRHDPLSAKAGDLGFYT 1081

Query: 864  ----ISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHIPY-----THIAQLSIYEKI 910
                + G ID +   Q   ++ ++K++H        + E +        +  Q  +Y   
Sbjct: 1082 VQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDEVAAYQGERLAQAMAEHRYDLQYQLYALA 1141

Query: 911  LKDSYPNK 918
            L     ++
Sbjct: 1142 LHRFLRSR 1149


>gi|323491621|ref|ZP_08096800.1| exodeoxyribonuclease V [Vibrio brasiliensis LMG 20546]
 gi|323314197|gb|EGA67282.1| exodeoxyribonuclease V [Vibrio brasiliensis LMG 20546]
          Length = 1205

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 149/1017 (14%), Positives = 329/1017 (32%), Gaps = 168/1017 (16%)

Query: 13   YELIYKDLWPLPYFQVSDINKYV-------SLSMETGNPTIL-----KKAQTLQQASQTQ 60
                 + +W  P   + +I+ Y+       S++  +G+   L     ++   L+Q  ++ 
Sbjct: 182  LAGEVRRIWNAPSDLLREISNYLTGSPLSLSVAAMSGSLADLHQQNLERIDALKQLWRSH 241

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFI---- 108
              ++ F++++   + ++   +K++                  D  +KL++   + +    
Sbjct: 242  Q-DDLFAVINDSDVNKRSYTKKSLPAWLEEVNLWAATETTGYDYPDKLERFSQQVLFDKT 300

Query: 109  -----------KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
                          + F    +           ++  A   +AK++   L F+DL+ N +
Sbjct: 301  PKGTAPQHPMFVAIEEFLANPISLKAPILAHAIEHCRAMLAKAKQQKQWLSFDDLLTNLS 360

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
              +   D S  +  +I       +IDE QDT  +Q+ +   +  +             LF
Sbjct: 361  AAI-DGDESELLAERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLE--------HPQCGLF 411

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             +GD KQ+IY F GA+    ++ ++      T          L  ++RS+AD++  V+++
Sbjct: 412  MIGDPKQAIYGFRGADIFTYIKARKQVSSHFT----------LGTNWRSSADMVAAVNQI 461

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            F +P++     +D    I             ++W     +  +     Q++       LP
Sbjct: 462  FELPDSPFIYDQD----IPFLPVNHSPNALQRVWTIGGQKQPALTYWLQDAEDKP---LP 514

Query: 338  QESSASILARRIAYTISNMIG-----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
            +      +A+  A  I  ++           +   K VIQA DI VLVR   +  ++   
Sbjct: 515  KGEYLQAMAKASADQIQTILAAAQDQQAYFENGENKHVIQAGDIAVLVRTGSEGRMVKE- 573

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
               L      SV  ++R  +   L  +D+  L + +L+ E+D +    L S +F      
Sbjct: 574  --ALAKQGIASVYLSNRDSVFTSLVAQDIQRLLQAVLTPENDRALRASLASEIFALDAGT 631

Query: 453  IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
            + K+    +E E+        A     +++ +      L  +    S       +L  + 
Sbjct: 632  LDKLNNDENEWES--------AINEFKEYRKLWTQRGVLPMLRSVMSKRHIAERLLEEEA 683

Query: 513  GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHS 566
            G +             + E L    ++ ++ +  L+ L   +              +   
Sbjct: 684  GERNLTDLM------HIGELLQQASQDVESDHGLLRWLAQAISDAQNGLGGSEDQIQRLE 737

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +  N V+I+T+H +KGLE  +VFL                      ++         Q+ 
Sbjct: 738  SERNLVQIVTIHKSKGLEYDLVFLPFV-------------LSYREASEAKYYDAAQDQTI 784

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMV 685
                     +    K    E  RL+YV +TRA     +           K      +  +
Sbjct: 785  LDIARQDASLAQADKERLAEDLRLIYVALTRAVYGCYVGAAPLRNGRSTKEPTGVHHSAM 844

Query: 686  YDSFHNDERVKKIKLTNSINK-----DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                 N ++     LT ++ K           +    H +   L++E   + +  E    
Sbjct: 845  GYLLQNGQQGGINDLTLAVQKHVDGLSSVAISDLPETHQQPLVLQQESQQQLIASELSNE 904

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKT------------------NLESLLSDNQTFNR 782
                  I +        +  + +                          S+ +  +    
Sbjct: 905  IDRNWRITSYSGLIKQGSHHSDEAYTDLMHLDIDSSDEEDQDEMVEPEMSIFTFPRGARP 964

Query: 783  GLIIHKLLQVIFTLPEHKRKN----FITSYCTKNAKLWPAKEYKNLLLSITRL-LE--NP 835
            G  +H L + +        +      I    ++   +      + L+ ++    L+  + 
Sbjct: 965  GTFLHTLFEEVEFTQPATSEENSTIIIQLLESEQLDINWLPVLQQLIDTVLATPLDGKSL 1024

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQ 870
            ++          E+     I       +                         + G ID 
Sbjct: 1025 LLNQKGPSQRLVEMEFLLPIEVLAAPALNRVIQRHDPLSAKAGDLGFHTVQGMLKGFIDL 1084

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPNK 918
            +   Q   ++ ++K++H   +         +     + +  Q  IY   L     ++
Sbjct: 1085 VFEHQGKYYVLDWKSNHLGDEVSFYHGQALKNAMADHRYDLQYQIYALALHRFLRSR 1141


>gi|83942766|ref|ZP_00955227.1| DNA helicase II, putative [Sulfitobacter sp. EE-36]
 gi|83846859|gb|EAP84735.1| DNA helicase II, putative [Sulfitobacter sp. EE-36]
          Length = 806

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 108/579 (18%), Positives = 178/579 (30%), Gaps = 143/579 (24%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L A Y+   K     DF DL+++   + ++ +    +  +  +   +IL+DE QDT++
Sbjct: 194 AELYAQYQARLKDLNACDFGDLLLHMVTIFQQHED---VLGQYQRWFKYILVDEYQDTNV 250

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R L           S  + +  VGD+ QSIY + GAE   +LR ++        
Sbjct: 251 AQYLWLRLLA----------SGHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP----- 295

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 ++ L  ++RST  IL     V +  E   G +                     L
Sbjct: 296 ---GAHVVRLEQNYRSTPHILAAASGVIAGNEGRLGKT---------------------L 331

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W             ++     ++D   +       AR I   I  +              
Sbjct: 332 W-------TESREGEKLRLIGHWDGEEE-------ARWIGDEIEALQRGTRELD-----P 372

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D+ +LVR                    +           + L I+D MA  R + S
Sbjct: 373 YTLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRVVTS 428

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE------YIQKFANCGISKFQH 483
            +DDL+F  ++ +P     +     I  T R     + E              G ++ + 
Sbjct: 429 PDDDLAFERIVNTPKRGLGDKAQQNIQKTARENGVNLVEGARILLANGGIGGRGAAQLRL 488

Query: 484 VIKYIHELIHIA----------------------------QFCSPHDFFTLILGAKKGRQ 515
           +I  I     +A                               S  +   +IL       
Sbjct: 489 LIDGIQRWSELARGPRLQTVVDDDSVIDEGAPLFHEEYGPPEVSHVELAQIILDESGYTG 548

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
            + +    E    ++ L E +    + E         L   LE     +         +V
Sbjct: 549 FWQNDKTPEAPGRLENLKELVKALEQFEN--------LQGLLEHVSLIMDNESDDGGAKV 600

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            IMT+H AKGLE P VFL      +F  +                               
Sbjct: 601 SIMTLHAAKGLEFPAVFLPGWEDGLFPSQRS----------------------------- 631

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +        EE  RL YVG+TRA     I   +N  
Sbjct: 632 ---MDESGLKGLEEERRLAYVGITRAEQLCTISFAANRR 667


>gi|54297724|ref|YP_124093.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris]
 gi|53751509|emb|CAH12927.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris]
          Length = 1076

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 164/912 (17%), Positives = 312/912 (34%), Gaps = 138/912 (15%)

Query: 46   ILKKAQTLQQASQTQC--IEERFSLLSSFF--------LTQKFTPQKNIITQEINKKSPD 95
              + A  L +   T    + + F                T+  T   ++ T+   +  PD
Sbjct: 271  DQQIAGALSKLLLTSDNQLRKSFDHHVGLVKKNCAPNEFTRIKTASSDLFTK--LQDCPD 328

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
              + L K         D+     +    L    L  +L   +     ++  +DF  +   
Sbjct: 329  FLDALLKVNQLPTPEYDKEQWDVLQALFLLLPLLVGHLQVSF----GEHNEVDFTAISQQ 384

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
                L   D    +   +D  I+H+LIDE QDTS+ Q+E++  L + +  G+      +T
Sbjct: 385  ALAALGDLDNPTDLALYLDHSIHHLLIDEFQDTSITQFELLTKLVQGWLPGEG-----KT 439

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            LF VGD  QSIY F  AE     + K            +   +EL  +FRST  I+  V+
Sbjct: 440  LFLVGDPMQSIYRFRQAEVGLFFQAKEH-----GIGPVRLKSLELRCNFRSTETIVNWVN 494

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
              FS   + Q                  + G V     V     ++ +  Q         
Sbjct: 495  DHFSKIFSQQVDI---------------ESGAVSFHPSVHVIEKNESSTIQAV------- 532

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              Q  +    AR +   I++ +  +             + I VLVR R   P I  L R 
Sbjct: 533  --QFKNREQEARHLIEIINSELNRNPE-----------QTIAVLVRTRTQLPEIISLLR- 578

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  I   G D  +L + + ++D+ +L   +L   + LS++ +L SP       DI  
Sbjct: 579  ---QNNIPYQGTDIDLLANLVHLRDVWSLAHALLFPGNRLSWLSILHSPYVGLGLSDIHC 635

Query: 456  ICTQRHETETVY-----EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            I          +     + IQ  +  G  +    I+ +++ +         D+    L  
Sbjct: 636  IAQYNSRKSIYHNLLHLDKIQDISEEGRIRANFFIQIMNQALLCRSHSRLSDWIADTLKN 695

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                ++ + +     ++ L   L+     E      + ++   L ++      A     +
Sbjct: 696  L-HVEKILDKAQLNDLEQLWMLLDQ---YENEGR--IPDMNEFLNEFN--KLYAQQTTPS 747

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS---KS 627
            +++IMT+H +KGLE   V L   G+Q           +         + +  P     + 
Sbjct: 748  QLQIMTIHKSKGLEFDTVILPGLGAQASRGDSPMLRWLKLPTQHHGNLLLVSPIKSANQD 807

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
               +   L +  ++ +  E  RLLYV +TRA  +L +       +  KS + ++ +++  
Sbjct: 808  SCPLYDYLDQLDEEKSAYEAQRLLYVAVTRAKSRLYL-----LDHSAKSYKSSFRNLLKY 862

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                                                +   +  +    E  +PK +  PI
Sbjct: 863  ---------------------------------QEFIADPDEAQHEEQEFPLPKLVKLPI 889

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
            +    +   L  S    +        +S       G++ H+LLQ I         +   +
Sbjct: 890  EYYQKQIPSLVQSQ---ESSCP---EISSGIPRLIGIVSHQLLQWICDNHPQTIDHVPWN 943

Query: 808  YCTKNAKLWPAKEYKN------LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
                  K     +         +   I+++ EN +    +S    +E     ++    ++
Sbjct: 944  LVNNELKTLGLNQEAQQTALSMIKNQISQMYENKIGLWILSRHE-NEQ-NEYELLVEYEN 1001

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
             +++  ID+  I     +I ++KT       ++     H  QL+ Y + L D      + 
Sbjct: 1002 KLVTRIIDRTFIENGTQWIIDFKTGKEDINTLQQ----HRQQLNEYGRYLSD-CTKFPIR 1056

Query: 922  CLLIYVSEPKVF 933
            C L Y++     
Sbjct: 1057 CGLYYLANGHWI 1068


>gi|89073889|ref|ZP_01160396.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
 gi|89050424|gb|EAR55925.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34]
          Length = 671

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 106/671 (15%), Positives = 216/671 (32%), Gaps = 135/671 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+ +      +++ +LL    LT+        + +++     + K  +    D     R 
Sbjct: 101 LKSSFSLFDDQDQMALLKE--LTEDELEGDKDLLKQLMSSISNWKNDMLSPADATAHARS 158

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
             +             L  +    Y+   K    LDF+DLI+    LL+     A +R  
Sbjct: 159 ERD------------QLFAHCYEMYQRQMKAYNALDFDDLILMPVLLLRDN---AEVRKH 203

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
               I ++L+DE QDT+  Q+  ++ L  +                VGD+ QSIYS+ GA
Sbjct: 204 WQNRIRYLLVDEYQDTNTSQYLFVKLLVGE----------RARFTVVGDDDQSIYSWRGA 253

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +P+ +    +              +I+L  ++RST+ IL   + + +   +    +  S 
Sbjct: 254 QPENLGLLNKDFP--------SLKVIKLEQNYRSTSRILRTANILIANNPHLFEKALFSE 305

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                                                      +    +    A ++   
Sbjct: 306 IP-----------------------------------DGAMLKVITAKNEEHEAEKV--- 327

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  +I    + +         KD  +L R    + L            +I    +     
Sbjct: 328 IGELIAHRFMNNTA------YKDYAILYRGNHQSRLFEKSL----MQNRIPYKISGGTSF 377

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
                IKD+MA  R + + +DD +F+ ++ +P        + K+        ++++    
Sbjct: 378 FSRSEIKDIMAYLRLLTNLDDDNAFLRIVNTPRREIGPVTLEKLGTYANMRGKSLFAASF 437

Query: 472 KFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----R 520
           +               Q    ++++L   A+          ++                +
Sbjct: 438 EMGLEQHLSGRGLESLQRFTHWVNQLADNAERGDTVAVVRQLVRDIHYEDWLYETSPSPK 497

Query: 521 FGNEVIDVLDEFLNFTL-----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                +  + +  ++        N  N   +L+E++  L       +     + ++V++M
Sbjct: 498 AAEMRMKNVSDLYSWITADLEGDNYDNEEKTLKEVVQRLTLRDMMERGEDDDDADQVQLM 557

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE P VFLV T   +  H+                                  
Sbjct: 558 TLHASKGLEFPYVFLVGTEEGILPHQTSID------------------------------ 587

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                +   +E  RL YVG+TRA  +LI           +  +      +Y+   +D   
Sbjct: 588 -----EENVDEERRLAYVGITRAQRELIFTLCKERRQYGELIKPEPSRFLYELPQDDLEW 642

Query: 696 KKIKLTNSINK 706
           +  +   S  +
Sbjct: 643 ESERKPVSAEE 653


>gi|309805876|ref|ZP_07699911.1| ATP-dependent helicase PcrA [Lactobacillus iners LactinV 03V1-b]
 gi|308167785|gb|EFO69929.1| ATP-dependent helicase PcrA [Lactobacillus iners LactinV 03V1-b]
          Length = 577

 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 104/614 (16%), Positives = 199/614 (32%), Gaps = 97/614 (15%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +  + +    V+  N             + ++ + L  +         
Sbjct: 30  GAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLDSDADSIWMST 89

Query: 66  FSLLSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L +         N    +  ++   +K  LK+   +  K   +     +  +
Sbjct: 90  FHALCVRILRRYAEKIGYANNFSIADTAEQLTLIKRILKELNIDSKKFDPKSLVNAISNA 149

Query: 123 TLASLTL--------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L                   +   Y++  + +C++DF+DLI+ T  L K       
Sbjct: 150 KNDLLDPEEYAKQVSNEYEKKIAIVYREYQKNLQHDCIMDFDDLIMQTLVLFKSEPE--- 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           + +    +  +IL+DE QDT+  Q+E+   L +            + +  VGD  QSIY 
Sbjct: 207 VLHYYQNKFWYILVDEYQDTNQAQYELCHLLAQQ----------HKNICVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++  +          + I+L  ++RST  IL   + V    +N +   
Sbjct: 257 WRGANMQNILNFEQDYRND------NCNTIKLEQNYRSTGHILNAANAVIKNNKNRKPKK 310

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW        +     + ++        +       A  
Sbjct: 311 ---------------------LW-------TNSGEGSKVNYYRASTGNDE-------AIF 335

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I+  I              +  D  +L R    +  I            I      
Sbjct: 336 IIGKINKEIKE---------NGYKYSDFAILYRTNAQSRNIEEAF----VKSNIPYKIVG 382

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI--FKICTQRHETETV 466
                D   IKD+MA  R + +  D +S   ++ +P        I  F+     +    +
Sbjct: 383 GHKFYDRKEIKDIMAYLRLVANPADYMSLHRIINAPRRGIGPTTISKFEEFMFSNNYTAL 442

Query: 467 YEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                        K     +   + + E+I  A+  +  +    IL          +   
Sbjct: 443 EALQSLELAPISGKLFNIMKDFGRKLEEMIIFAKNNTVTELTNKILNDFGYIDALKAEHT 502

Query: 523 NEVI---DVLDEFLNFTLRNE---QNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIM 575
            E     + LDEFL  T + +   + +    + +   L +    + +     N ++V +M
Sbjct: 503 IEADTRLENLDEFLTVTKQFDDNYEANEDGAKAVDDFLAEVSLLSDQDDLQENIDQVALM 562

Query: 576 TVHTAKGLESPVVF 589
           T+H AKGLE PVVF
Sbjct: 563 TLHAAKGLEFPVVF 576


>gi|147674146|ref|YP_001217828.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|262168313|ref|ZP_06036010.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27]
 gi|146316029|gb|ABQ20568.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|227014216|gb|ACP10426.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395]
 gi|262023205|gb|EEY41909.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27]
          Length = 1208

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 129/942 (13%), Positives = 268/942 (28%), Gaps = 139/942 (14%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               +   I + ++   +  L      +       +  KS           +         
Sbjct: 263  ALLRRLPILDAWAQSETHDLHVPSELE-EFTQSGLLAKSKKGNPPQLALFERIEAFLAEP 321

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             + K      A      +L     +AK  +  L F+DL+   +  L   D    +  +I 
Sbjct: 322  VSLKTPLLVHAIHHCRHWLA----KAKSTHHWLSFDDLLTQLSAAL-DNDEQGLLGERIR 376

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                  +IDE QDT  +Q+ +   L  D             L  +GD KQ+IY+F GA+ 
Sbjct: 377  SLYPVAMIDEFQDTDPLQYSIFSRLYLD--------HPQCGLLMIGDPKQAIYAFRGADI 428

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               ++ +       T          L  ++RS+A ++  V++VFS   +    S+D    
Sbjct: 429  FTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATHPFIYSDD---- 474

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            I  +          + W        +      E          +    + +A   A  I 
Sbjct: 475  IPFQPVAASPGTDKRHWSLEGQVQPALTYWWPEDLDKP---QSKTDYYAQMAEACAAQIQ 531

Query: 355  NMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +++      +    R   I+A D+ VLVR   +  ++      L      SV  ++R  +
Sbjct: 532  HILTASASGAAAFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGIASVYLSNRDSV 588

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  +D+  L   +   ED+      + S LF  +  ++  +    +E E +    ++
Sbjct: 589  FASDVAQDIERLLLAVWQPEDERLLRAAIASNLFALTASELDALNNDENEWEQLIAEFRQ 648

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            +        + V+  +  ++               L   +G +             + E 
Sbjct: 649  YRRLWSE--RGVLPMLRAVLTQRH------IAERWLTESEGERWLTDYL------HISEL 694

Query: 533  LNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L    R   +    L+ L   +              +   +    V+I+T+H +KGLE P
Sbjct: 695  LQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYP 754

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL    S                 ++          +        + +    +    E
Sbjct: 755  LVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTGNEEALAKADQERLAE 801

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------------MVY 686
              RLLYV +TRA     I      +        + +                      + 
Sbjct: 802  DLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGGIADLQQALL 861

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                N   V +        +                  +  +   ++     +  +    
Sbjct: 862  KQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHA 921

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLIIHKLLQVIFTLP 797
              + + E  +L     D       +    +          +    G  +H L + +    
Sbjct: 922  RHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQ 981

Query: 798  EHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVS 850
                +           ++   ++    L   +  +L  P       +   M+    +E+ 
Sbjct: 982  SAHSEPNTKIILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELE 1041

Query: 851  VSGKINCPKKDII-------------------------ISGRIDQISISQQNIFIFEYKT 885
                I       +                         + G ID +   Q   ++ ++K+
Sbjct: 1042 FLLPIEVLDAPTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQYQGRYYVLDWKS 1101

Query: 886  HHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            +H       + P           +  Q  IY   L     ++
Sbjct: 1102 NHLGDDPAAYHPQRLSGAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|170724835|ref|YP_001758861.1| ATP-dependent DNA helicase Rep [Shewanella woodyi ATCC 51908]
 gi|169810182|gb|ACA84766.1| ATP-dependent DNA helicase Rep [Shewanella woodyi ATCC 51908]
          Length = 670

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 112/656 (17%), Positives = 226/656 (34%), Gaps = 130/656 (19%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           L+  +   +    +     F    S  L ++ T  +    +++ K    L   +   + +
Sbjct: 89  LEVIKREHKVIGLKPGFSLFDDQDSLALLKELTEDEFDGDKDLLKN---LMTAISNWKGD 145

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            +         K  +S L ++     L   Y +  K    LDF+DLI+    LL+     
Sbjct: 146 LVVPEQAIKLAKDEQSKLHAV-----LYQRYAKHMKAYNALDFDDLILIPTLLLRHN--- 197

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R +  Q I ++L+DE QDT+  Q+E+++ +  +                VGD+ QSI
Sbjct: 198 KEVRERWQQRIQYMLVDEYQDTNTSQYELVKLIVGE----------RARFTVVGDDDQSI 247

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YS+ GA+P+ ++   +   K          +I+L  ++RS+  IL   + + +   +   
Sbjct: 248 YSWRGAKPQNLVLLGKDFPK--------LKLIKLEQNYRSSQRILRAANILIANNPHVYD 299

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +  S           G+   V +                             ++    A
Sbjct: 300 KALFSE-------LAYGEPLRVLI----------------------------AANEEQEA 324

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            R+   I+ MI              Q  D  +L R    + L+           +I    
Sbjct: 325 ERV---IAEMIRH------KFMGKTQFGDYAILYRGNHQSRLLERSL----MTNRIPYKL 371

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
           +          IKD+MA  R +++ +DD +F+ ++  P        + ++         +
Sbjct: 372 SGGTSFFGRAEIKDIMAYLRLVVNPDDDNAFLRVVNLPKRGIGPSTLERLGNYANERHIS 431

Query: 466 VYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518
           ++E I +                   +++ +    A    P D    ++           
Sbjct: 432 MFEAIFQAELNHHLTPAAMGSLYKFGQFVVDTGEKATRGDPVDAVKHLIRNINYEDYLYE 491

Query: 519 ----SRFGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHN 570
               ++     +  + E   +        E +   +L E+++ L       + +     +
Sbjct: 492 TSTSAKAAEMRMKNISELYRWVTEMLEGDELDEGMTLPEVVTRLTLRDMMERNSEDEGGD 551

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V++MT+H +KGLE P VF+V T  ++  H+                             
Sbjct: 552 QVQLMTLHASKGLEFPYVFMVGTEERILPHQTSID------------------------- 586

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--IICKHSNTSNEKKSNQRTWYDM 684
                     +   EE  RL YVG+TRA  +L  ++C+      E    + + + M
Sbjct: 587 ----------EDNVEEERRLAYVGITRAQKELWFVLCRERRQFGETMRCEPSRFLM 632


>gi|149908513|ref|ZP_01897175.1| DNA helicase II [Moritella sp. PE36]
 gi|149808347|gb|EDM68284.1| DNA helicase II [Moritella sp. PE36]
          Length = 722

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 103/580 (17%), Positives = 194/580 (33%), Gaps = 120/580 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E+  +  ++DF +L++ +++L   +     I        ++IL+DE QDT+ IQ
Sbjct: 172 IYQAYQESCDRAGLVDFGELLLRSHELWLHKPH---ILAHYQDRFSNILVDEFQDTNNIQ 228

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R LT D             L  VGD+ QSIY + GA+   + R     +       
Sbjct: 229 YAWLRMLTGD----------RGNLMIVGDDDQSIYGWRGAQVANIQRFLTDFE------- 271

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS+++IL   + +        G                      +LW 
Sbjct: 272 -GSKTIKLEQNYRSSSNILNAANALIVNNSERMGK---------------------ELW- 308

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                          S  + F+ + +       AR +   I                   
Sbjct: 309 ------TEDKEGDPISLYAAFNEVDE-------ARFVIGRIKEWQDQGGSL--------- 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    + ++       +  Y+I           D L +KD MA  R   +++
Sbjct: 347 -SDCAILYRSNAQSRVLEDALLQEQLAYRI----YGGHRFFDRLEVKDAMAYMRLKNNRD 401

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEY------IQKFANCGISKFQHVI 485
           DD +F  ++  P     E  +  +    R +  T+++           A    S  +  +
Sbjct: 402 DDAAFERIVNKPTRGIGERALSLLRDASREQGSTLWQAAIYLLDNNLIAGRAASSIRKFV 461

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN--- 539
           + I EL +     + H+    ++     +  +    G +     D L+E ++        
Sbjct: 462 ELITELDNDVADLALHEQIDHVVLYSGLKSMYQLEKGEKAQSRIDNLEELVSAARSFQIP 521

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +    + L   ++                 + V++MT+H+AKGLE PVVF+V     +F
Sbjct: 522 DDSEEMTELSAFLAFAVLESAE--GQADEFEDAVQLMTLHSAKGLEFPVVFMVGVEEGMF 579

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                      +    EE  RL YVG+TRA
Sbjct: 580 PSQQST----------------------------------EEAGRMEEERRLCYVGITRA 605

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +L I    +     K         + +         ++
Sbjct: 606 MKKLYISYAESRRLYGKEMNHRPSRFIREIPEQYIEEIRL 645


>gi|87309169|ref|ZP_01091306.1| probable helicase [Blastopirellula marina DSM 3645]
 gi|87288160|gb|EAQ80057.1| probable helicase [Blastopirellula marina DSM 3645]
          Length = 1040

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 143/965 (14%), Positives = 310/965 (32%), Gaps = 129/965 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
             E+   + + +            +  +            +AQ +  A +          +
Sbjct: 164  GETTRGVSQLMLDAASQFYGLFQETPAAVWTALKARKPPQAQEIDAAKKLLLEAPLDKRM 223

Query: 70   SSFFLTQ---------KFTPQKNIITQEINKKS----PDLKEKLKKSQDEFIKIRDRFNT 116
            +                   +K +  + I+        ++   + ++    I        
Sbjct: 224  TKARNEDLARFDEGDFGGFLEKGLAKKVIDDDLSYYRAEIPADVARAYQTLISAAACEPY 283

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
              + + T  +  L    +A Y   K ++    F+D+    +      D    + Y++D  
Sbjct: 284  NLLVRQTEGAFQLLDRFDAIYRRLKFQSQSYRFDDVTRFLSRQ-ADADTPTRVAYRLDGH 342

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            INH+L+DE QDTS  QW V+R +               + F VGD KQ+IY + G   + 
Sbjct: 343  INHLLLDEFQDTSPAQWSVLRPVARRVTT-----QPLGSFFCVGDVKQAIYGWRGGVAEI 397

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                     +            EL +SFRS+  ++  V+ V         L        R
Sbjct: 398  FEEVVAELGELDEA--------ELAVSFRSSPVVIDFVNLVARNLHRHPSLDRFEDGVKR 449

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             ++               VS   ++   + +           E      A R+  ++ + 
Sbjct: 450  WQTMFADHSTAKTSLPGYVSVETARYGEEGD--------PTDEMLFVAAAERVCRSLED- 500

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                              ++ VLVR       + F  R       ++        LTD  
Sbjct: 501  --------------SPGSEVGVLVRTNAAVRKMIFELR----QRGVTASEEGGGTLTDSA 542

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            +++ +M+L ++I    D ++   +  SPL   +   +      R  +E       +    
Sbjct: 543  SVQLMMSLLQWIDHPADTVARFHVQNSPL--AATIGLTPHMAARKSSELAQALRNELLVF 600

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
            G          +                + +L      ++            +++ +   
Sbjct: 601  GYG------AMLRRW-------------SQVLVEIGNSRE---------RRRVEQLVRMA 632

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               +  +     + +  +E              + VR+MT+H AKGL+  VV L+D   +
Sbjct: 633  HAYQPKATLRTSDFVEFVETQRV-----ADPQASAVRVMTIHQAKGLQFDVVVLLDLDHE 687

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR---NNIVSDLIKHLKKSTQEEYNRLLYV 653
             F  +    +    +        +       +      +  +  +       E   +LYV
Sbjct: 688  -FPGRSPNFVIERAAPLSPVTSIVRYANKDVQKVLPPRLQQMFTNASSQQAVEELCVLYV 746

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
             +TRA   + +     ++ EKK+  RT   +V ++     + +   +  ++   EW A+ 
Sbjct: 747  AITRAVHAMHVMIKPPSAREKKTP-RTMAGLVTEALEVKRQPQGNDVVFAMGDAEWFAHL 805

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
             +   P    L R   + + +          +           L PS ++   +  + +L
Sbjct: 806  AAADAPR---LHRTPVVARRLP--------IAMAAAKSQRGETLAPSKLEGGPRLKVANL 854

Query: 774  L--SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
            L  +D+     G + H  L+ I  L + +          + A +  A    +LL    + 
Sbjct: 855  LHTTDSTGRLFGSVTHAWLERIEWLNDFELDETRFRTIAR-AIVGDALNVDHLLARFRKT 913

Query: 832  LENPMMTTAM-----------SCDSYSEVSVSGKINCPKKDIIISGRIDQISI--SQQNI 878
            +E P +   +           S  + +EV          +  I +G ID++ +      +
Sbjct: 914  IEQPQLRQLLDRQTAPRPQGVSAGATAEVRQEQTFAIAVEGGIQNGAIDRLVLWKEGDEV 973

Query: 879  F---IFEYKTHHHVPQEIEHIPYT---HIAQLSIYEKILKDSY--PNKSLVCLLIYVSEP 930
                + +YKT      + E +      +  Q++ Y + ++  +  P K+++  L + S  
Sbjct: 974  VAADVIDYKTDRLPEDDAETLADRAAYYRPQVNAYRRAVQQMWRLPEKAVIGHLYFASID 1033

Query: 931  KVFII 935
             +  +
Sbjct: 1034 TIVEV 1038


>gi|15642318|ref|NP_231951.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar El
            Tor str. N16961]
 gi|121586166|ref|ZP_01675957.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80]
 gi|153817895|ref|ZP_01970562.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457]
 gi|153821518|ref|ZP_01974185.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33]
 gi|227082444|ref|YP_002810995.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2]
 gi|229507609|ref|ZP_04397114.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286]
 gi|229512195|ref|ZP_04401674.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33]
 gi|229519331|ref|ZP_04408774.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9]
 gi|229607115|ref|YP_002877763.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236]
 gi|254849444|ref|ZP_05238794.1| exodeoxyribonuclease V [Vibrio cholerae MO10]
 gi|255746995|ref|ZP_05420940.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101]
 gi|262161463|ref|ZP_06030573.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1]
 gi|298500312|ref|ZP_07010117.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757]
 gi|9656886|gb|AAF95464.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar El
            Tor str. N16961]
 gi|121549578|gb|EAX59602.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80]
 gi|126511603|gb|EAZ74197.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457]
 gi|126521011|gb|EAZ78234.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33]
 gi|227010332|gb|ACP06544.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2]
 gi|229344020|gb|EEO08995.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9]
 gi|229352160|gb|EEO17101.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33]
 gi|229355114|gb|EEO20035.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286]
 gi|229369770|gb|ACQ60193.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236]
 gi|254845149|gb|EET23563.1| exodeoxyribonuclease V [Vibrio cholerae MO10]
 gi|255735397|gb|EET90797.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101]
 gi|262028774|gb|EEY47428.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1]
 gi|297541005|gb|EFH77059.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757]
          Length = 1208

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 129/942 (13%), Positives = 269/942 (28%), Gaps = 139/942 (14%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               +   I + ++   +  L      +       +  KS           +         
Sbjct: 263  ALLRRLPILDAWAQSETHDLHVPSELE-EFTQSGLLAKSKKGNPPQLALFERIEAFLAEP 321

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             + K      A      +L     +AK  +  L F+DL+   +  L   D    +  +I 
Sbjct: 322  VSLKTPLLVHAIHHCRHWLA----KAKSTHHWLSFDDLLTQLSAAL-DNDEQGLLGERIR 376

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                  +IDE QDT  +Q+ +   L  D+            L  +GD KQ+IY+F GA+ 
Sbjct: 377  TLYPVAMIDEFQDTDPLQYSIFSRLYLDY--------PQCGLLMIGDPKQAIYAFRGADI 428

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               ++ +       T          L  ++RS+A ++  V++VFS   +    S+D    
Sbjct: 429  FTYIKARNQVNAHYT----------LGTNWRSSAAMVAAVNQVFSSATHPFIYSDD---- 474

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            I  +          + W        +      E          +    + +A   A  I 
Sbjct: 475  IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP---QSKTDYYAQMAEACAAQIQ 531

Query: 355  NMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +++      +    R   I+A D+ VLVR   +  ++      L      SV  ++R  +
Sbjct: 532  HILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGIASVYLSNRDSV 588

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  +D+  L   +   ED+      + S LF  +  ++  +    +E E +    ++
Sbjct: 589  FASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQ 648

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            +        + V+  +  ++               L   +G +             + E 
Sbjct: 649  YRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL------HISEL 694

Query: 533  LNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L    R   +    L+ L   +              +   +    V+I+T+H +KGLE P
Sbjct: 695  LQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYP 754

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL    S                 ++          +        + +    +    E
Sbjct: 755  LVFLPFVMS-------------YRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAE 801

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------------MVY 686
              RLLYV +TRA     I      +        + +                      + 
Sbjct: 802  DLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGGIADLQQALL 861

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                N   V +        +                  +  +   ++     +  +    
Sbjct: 862  KQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHA 921

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLIIHKLLQVIFTLP 797
              + + E  +L     D       +    +          +    G  +H L + +    
Sbjct: 922  RHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQ 981

Query: 798  EHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVS 850
                +           ++   ++    L   +  +L  P       +   M+    +E+ 
Sbjct: 982  SAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELE 1041

Query: 851  VSGKINCPKKDII-------------------------ISGRIDQISISQQNIFIFEYKT 885
                I       +                         + G ID +   Q   ++ ++K+
Sbjct: 1042 FLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQYQGRYYVLDWKS 1101

Query: 886  HHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            +H       + P           +  Q  IY   L     ++
Sbjct: 1102 NHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALALHRFLRSR 1143


>gi|292897919|ref|YP_003537288.1| DNA helicase II [Erwinia amylovora ATCC 49946]
 gi|291197767|emb|CBJ44862.1| DNA helicase II [Erwinia amylovora ATCC 49946]
          Length = 720

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 91/530 (17%), Positives = 174/530 (32%), Gaps = 82/530 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRMLAGD----------TGKVIIVGDDDQSIYGWRGAQVENIQRFLQDFPA----- 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 274 ---AETIRLEQNYRSTNNILKAANTLIANNNGRLGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  +    F+ L +       AR +   I   +              
Sbjct: 310 -------TEDSDGEPIAIYCAFNELDE-------ARFVVNRIKVWMEKGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R I ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQTSMPYRIYGGMRFFERQEIKDSLAYLRLISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++        +  A    S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARERQLTLWQTARALLQEKALAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L         H     ++        +    G +    I+ L+E +N T +   
Sbjct: 462 TELVDSLAQETSDMPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVNATRQYSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H AKGLE   VF+V     +F 
Sbjct: 522 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTMHAAKGLEFMQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +   +                    +      ++  +   K      +R
Sbjct: 582 SQMSLEEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSR 631


>gi|170099549|ref|XP_001880993.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644518|gb|EDR08768.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1055

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 121/796 (15%), Positives = 225/796 (28%), Gaps = 159/796 (19%)

Query: 8   SLNESYELIYK----------DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57
           + NE  E + K           +          + KY  L     N T+    ++ +   
Sbjct: 85  AANEMRERLTKLIGKERTSQLRMGTFHALCARFLRKYAHLVKLAENFTVCDAEESKKIIQ 144

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                   +    +  L Q      +I   +  ++S  +  +     +  I+ R+     
Sbjct: 145 ALLKPYTAYLASENLDL-QPGRVVSSISKAKSKEQSGSVFLEEVIKAERRIRQRNGLPLG 203

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              +       +   +   YE+  K+N  LDF+DL+     L  K D +           
Sbjct: 204 DDVEEKKTIDRIIGEIFLEYEKTLKRNNALDFDDLLTYGVKLFTKNDETVIWC------- 256

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL+DE QDT++ Q++++R+L              R +  VGD  QSIY +  AE   +
Sbjct: 257 RHILVDEFQDTNITQYKLMRALA-----------IARCVTIVGDPDQSIYGWRSAEVGNL 305

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            + +R               + L  ++RSTA IL     + S  ++    S  ++     
Sbjct: 306 SKMRRDFP--------DTEQVLLEENYRSTAAILKASLAIISQDKSRIQKSLHTSHPNGF 357

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                                                 L Q  +    A  IA  +  ++
Sbjct: 358 TPV-----------------------------------LYQVQTEHEEAAFIAIEMKRLV 382

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                        +   D ++L+R    + +I    +       I           + L 
Sbjct: 383 AH-------MGGALNWGDFVILLRFNALSRVIETALQ----KEGIPSRVLGGHKFFERLE 431

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           +KDL+A  + + +     +F   +  P     E  + ++  +  ++      I +     
Sbjct: 432 VKDLLAYLQVVDNPNFVPAFKRAVNVPGRGIGEKTVAELIGRAEKSNQSPLAIVEAICDN 491

Query: 478 IS---------KFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFIS--RFGNEV 525
            +         K    +  I  L   A    SP D    ++   K               
Sbjct: 492 KAPDIKPAVKRKVAPFVTAIRSLRAQAHNSSSPADLVRKLVDLIKYEDHLKKTQSDWESR 551

Query: 526 IDVLDEFLNFTLRNEQNSYSS-------------------LQELISELEQYPPTIKRAHS 566
            + + E + F    E  + +                    L++ +           ++  
Sbjct: 552 WENVKELITFASEMEAQNQAEEAADAVAGGDNSIEMSTTPLRQFLQASMLSSEGDNQSEE 611

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            N ++V I T H+AKGLE PVV +       F                            
Sbjct: 612 GNKDKVTISTCHSAKGLEWPVVMIPSVDQNTFPF-------------------------- 645

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-------KHSNTSNEKKSNQR 679
                        +     E  RLLYV  TRA   L +             S E      
Sbjct: 646 ------------YRSEDTAEERRLLYVACTRAQSLLYVSRATTRMVAGETKSKELSEFIS 693

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
           +  +            ++I      ++             E     R  T ++   E  +
Sbjct: 694 SVLNDNGLKNEMAFFSQQIPFFTQEDRATIATVLQRPPPEEAEVQRRVATFERSGREHPM 753

Query: 740 PKKLFSPIKNDINEPY 755
                       + P 
Sbjct: 754 QIYWGGGHHVAPSRPK 769


>gi|153213940|ref|ZP_01949136.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587]
 gi|124115593|gb|EAY34413.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587]
          Length = 1208

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 125/893 (13%), Positives = 261/893 (29%), Gaps = 134/893 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    +      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFEQIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   L  D+            L  +GD K
Sbjct: 366  DEQGLLGERIRSLYPVAMIDEFQDTDPLQYSIFSRLYLDY--------PLCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP---QSKTDYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L     
Sbjct: 521  QMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++          +        + 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTGNEEA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------ 683
            +    +    E  RLLYV +TRA     I      +        + +             
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 684  --------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                     +     N   V +        +                  +  +   ++  
Sbjct: 851  GGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTS 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLII 786
               +  +      + + E  +L     D       +    +          +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +      + +           ++   ++    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAQSEPNTKIILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            Q   ++ ++K++H       + P           +  Q  IY   L     ++
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLGSAMVDHRYDLQYQIYALALHRFLRSR 1143


>gi|89094047|ref|ZP_01166991.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92]
 gi|89081721|gb|EAR60949.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92]
          Length = 1179

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 131/970 (13%), Positives = 299/970 (30%), Gaps = 147/970 (15%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGN----PTILKKAQTLQQASQTQCIEERFSLLSSFF 73
            K  W      +  + +   ++  +      P  L +      + Q +  +    +L    
Sbjct: 229  KQAWLANSDDLQSLIQASDVNKRSYTKASLPKWLAQIDQYAASEQLEPGKTLKGILQR-- 286

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
             TQ    +K   T+    + P           +   +       +    T A     K +
Sbjct: 287  FTQSVLIEKT--TKGAAPEHP--------LFVQIDDLLASSVPVREILLTSAL----KEV 332

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                   K +  +  F+DL+   +  L        +   + ++    LIDE QDT  +Q+
Sbjct: 333  ETRLARTKAEYQLQTFDDLLTGFSAALSVDQTGLLV-SAVREQFPVALIDEFQDTDPLQY 391

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +   L  D F           L  +GD KQ+IY+F GA+    ++ +R           
Sbjct: 392  GIFSHLYSDPF--------NSALVMIGDPKQAIYAFRGADIFTYIQARR----------S 433

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RST+ ++  V+K+F   ++A    ED   T    + +  +  T+Q    
Sbjct: 434  VSETYTLDTNWRSTSGMVDAVNKLFQFADSAFIYDEDIPFTPVKAAGKSAKKLTIQQH-- 491

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                   +            + L +    S  A+  A  I  ++  D    +   R ++ 
Sbjct: 492  -------EPAALNIWHLESEEPLNKVQYLSAFAQSTASEIDRLLSGDASIGD---RSVEG 541

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             DI VLVR R +      + R L       V  +++  + +     +L  +   +   ++
Sbjct: 542  SDIAVLVRDRFEA---EEIRRALAVYEHPCVYLSNQDSVFNSQEALELSLILAAVEQPQN 598

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
            + +    L + +   +   + ++           E   +      +++Q +   +  L  
Sbjct: 599  ERALKAALATEILLQNVQQLDQLNYD--------ENAWEGVVAEFTEYQEIWLKLGVLPC 650

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
            +++     +    +L    G ++  +         L E L       + +   ++    +
Sbjct: 651  LSRMLHQRNLSARLLEQMGGERRLTNLL------HLAELLQQASSEVEGTSGLIRWFNEQ 704

Query: 554  LEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +               +  N V I+T+H +KGLE P+VFL        + +  K      
Sbjct: 705  IANPSGASDDKILRLESERNLVTIVTIHKSKGLEYPIVFLPFIA----NFREQKTAFYHD 760

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--- 667
                          +    +     ++   K    E  RLLYV +TR+  +  +      
Sbjct: 761  DEGT----------AVLDLSSGEGALEEADKERLAEELRLLYVALTRSVYRCYLGLADIR 810

Query: 668  -SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI------NKDEWIAYEWSTHHPE 720
              N+   + S+    Y ++ +  + DE + ++   +                 ++     
Sbjct: 811  LGNSKKSRLSDSAIGYLLLQNGDNLDEALSQLSQVSDAIQICSPPDHGAQKDMFAFVDEP 870

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---- 776
                         +D         +  ++      +L    ++   ++  E +  D    
Sbjct: 871  EMEALSVREFSGKIDRSWRVSSYSALSRHSAEHLPVLPGLDLEVVEESGEEQVGDDGMTI 930

Query: 777  ---NQTFNRGLIIHKLLQVIFTLP----EHKRKNFITSYCTKNAKLWPAKEYKNLLLS-I 828
                +  N G  +H + + I           R  +      +       + ++ ++   I
Sbjct: 931  FNFPKGANAGTFLHSVFEEIDFYTYLHNPECRIEYQAQISEQLILAGYEEAWQPVIDQLI 990

Query: 829  TRLLENPM------MTTAMSCDSYSEVSVSG-------------------------KINC 857
              +L+  +      +      D   E+                              +  
Sbjct: 991  VDVLQTELGDGGFSLGQVRDKDRLVEMEFMLKADHLQVAQLEGLIRRYDALSAQTRPVAF 1050

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYE 908
                 ++ G ID +       ++ +YK++H   +         E     + +  Q  +Y 
Sbjct: 1051 EPLKGMLKGFIDLLFRVDDRYYVLDYKSNHLGNRADCYTQEALERAMAEHRYDLQYLLYS 1110

Query: 909  KILKDSYPNK 918
              +      +
Sbjct: 1111 LAVHRLLMQR 1120


>gi|33239787|ref|NP_874729.1| superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237313|gb|AAP99381.1| Superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 807

 Score =  263 bits (672), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 107/620 (17%), Positives = 201/620 (32%), Gaps = 99/620 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y +A   N  LD           ++    S   R    +   H+L+DE QD
Sbjct: 206 RLTAKAYRVYRKALAANNALD---FDDLLLLPVQLLQQSKETRDYWHKRFKHLLVDEYQD 262

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  +     +      R++F VGD  QSIYSF  A+ + ++  ++    
Sbjct: 263 TNWTQYELIKLLVTNGEPPSSFKAWEGRSVFVVGDADQSIYSFRAADFRILMGFEQDFGA 322

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
            +       ++++L  ++RST++IL   + + S  +        +T              
Sbjct: 323 NSKGNY-DSNVVKLEENYRSTSNILEAANSLISNNKERIDKVLKATR------------- 368

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                           +      T   D + +       A  + + I           + 
Sbjct: 369 ---------------SSGDLIKLTRCDDEIAE-------AEAVVHRIR--------LIDA 398

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ +L R    + +I          + I  +        D   +KD++A  +
Sbjct: 399 ANNNLNWSDVAILYRTNAQSRVIEESL----VRWNIPYIVVGSLRFYDRREVKDILAYLK 454

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-------TVYEYIQKFANCGIS 479
            +++  D +S + +L  P     +  I K      +         T  E I+        
Sbjct: 455 LLINPSDSVSLLRVLNVPKRGIGKTTIQKFTDAASQLGVTVWDIVTDPEAIRSLGGRSSK 514

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFT 536
                 + I EL        P +   L L      ++ IS       E    L+E +N  
Sbjct: 515 GLLEFREIIQELQSHLNSSGPAEIIRLALEKSGYIKELISIATDEAEERRRNLEELVNAA 574

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N    L+  ++          +   ++ N V +MT+H++KGLE P+V LV    
Sbjct: 575 LQYQEENEAGDLEGFLATAALASDADNKD--SSLNRVTLMTLHSSKGLEFPIVCLVGMEQ 632

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 633 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGL 658

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   +         +     +      ++     I L+           E  
Sbjct: 659 TRAKEKLCLFHANERRLWGGMREPAVSSIFLSEIPSELIEGDIPLSGGTVLRRDNRLERL 718

Query: 716 THHPENTPLEREETIKQLMD 735
           T     +P +  +       
Sbjct: 719 TRVDRGSPSDVSKKSHDAPS 738


>gi|329122565|ref|ZP_08251146.1| ATP-dependent DNA helicase Rep [Haemophilus aegyptius ATCC 11116]
 gi|327473116|gb|EGF18542.1| ATP-dependent DNA helicase Rep [Haemophilus aegyptius ATCC 11116]
          Length = 670

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 115/644 (17%), Positives = 223/644 (34%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R +   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRSRWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 D----------RICFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGEGEKLLVIEAKNEEHEAEQIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  ++++ I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFDAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L      +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSVIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P V+L+     +  H+    
Sbjct: 527 NLNQVVTRLTLRDMLERSEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQKELTFS 611

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +C+      E    + + +     +        K KLT    ++
Sbjct: 612 LCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 655


>gi|307825819|ref|ZP_07656035.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum
            SV96]
 gi|307733127|gb|EFO03988.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum
            SV96]
          Length = 1185

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 136/974 (13%), Positives = 290/974 (29%), Gaps = 130/974 (13%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKA---------QTLQQASQTQC 61
            ES +   K+L  L       ++   +           K            +L        
Sbjct: 215  ESLDAALKELQRLAGLAKDQLDNCANALRNCFADEKFKTGYTDTFGYHHDSLSAWLHGTT 274

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                    +   LT     +     +    K+    ++  +   E       F+      
Sbjct: 275  -THIPDAEAFALLTGNGLMEALHGNKFRTNKTQSGAQRKAEYLAELAIDTAAFDALASAF 333

Query: 122  STLASL---TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + +A +   TL   L    ++  ++  VL F+DLI    + L+  +    +  ++ Q   
Sbjct: 334  TQIALVLRKTLLDSLREELDKRLQQLNVLSFDDLISRLAEALQ-SEKCELLTAELQQRFE 392

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
              LIDE QDT   QW +  SL           +  + L+ +GD KQ+IY F GA+    L
Sbjct: 393  VALIDEFQDTDDSQWFIFSSLFA---------APSQYLYLIGDPKQAIYKFRGADIYSYL 443

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              ++  + + T          L L++RS   ++  V+ +F      +    +    I  +
Sbjct: 444  DAQKQAEHQFT----------LGLNWRSHPQLVDAVNALFQRD---RAFFLEGLEFINVK 490

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
             +     G +    Q V+       P+  S T  +       +A  +   +   + +++ 
Sbjct: 491  PALSADNGELHHEGQAVAPMMLWQLPESGSKTGCW---TAGKAAEEIRVAVVNEVVDLLT 547

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             D I      RV+  KDI +LVR            R       +  V N    +      
Sbjct: 548  GDFILQPAN-RVLLPKDIAILVRTNTQARDYQAALR----LAGVPSVLNSTESVFASQEA 602

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             DL +L + +    D       L    F+     ++++     E +              
Sbjct: 603  ADLYSLLQAVAHPGDSGLLKQALTLDWFDLDGQTLYRLINNEIELDAWMS---------- 652

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTL 537
                  + Y  +                +L  +K R         E     L   +    
Sbjct: 653  ----RFLGYFQDWQQ----TGLMAMMLHLLTQEKIRAGVSKTLMAERQLTNLHHLIELVQ 704

Query: 538  RNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            +   + +  + + +  L             +    ++ + V+I+T+H +KGLE  +VF  
Sbjct: 705  QAAVDEHLGINKTLDWLRSAIAKASSAEDQQLRLESDDDAVKIVTMHRSKGLEYSIVFCP 764

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +      +    ++   +++    + +       +      +        E  R+ 
Sbjct: 765  YLWQR---SDRLNSERLLIRCHENGRTIVDLGS-----DDFERHREMALNEELAEDLRVF 816

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YV +TRA  +  I    +  ++  +N  +   ++  +  +  + +           +  A
Sbjct: 817  YVAVTRAKYRCYI-AWGDVRSQDTANDSSMAWLLEFAAADFSKQQARLQAFQNQAGQAFA 875

Query: 712  YEWSTHHPEN-------------TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            Y       E                 +R+ ++                + +    P    
Sbjct: 876  YRLLDVPGELNGSYQKMVAHTQMQAKKRKRSLYTRWQMSSYTALSALSMHDAPELPEDKA 935

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
                         +     +  + G ++H LL+    +   +RK+  T       +    
Sbjct: 936  GEQTLIAKSEPGSAAFELPKGAHTGNVVHDLLENHAFIDLAQRKDIATQRDKACQRYGLK 995

Query: 819  KEYKNLLLSIT-RLLENPM--------MTTAMSCDSYSEVSVSGKINCPKKDII------ 863
             E   LL  +   ++  P+        +          E+     +       I      
Sbjct: 996  LERPELLDELLQAVVATPLSETNVDFCLMNLAENQCLKEMPFYLSMQTMDAAQINHILRD 1055

Query: 864  ---------------ISGRIDQI--SISQQ--NIFIFEYKTHHHVPQEIEHIPYT----- 899
                           ++G ID I   +       ++ +YKT+       + + +      
Sbjct: 1056 TPAFQSLTAKQMCGYLTGFIDLICAILDSGTRRYYVMDYKTNGLQDYSPDSLTHAMREHN 1115

Query: 900  HIAQLSIYEKILKD 913
            +  Q  IY  +L  
Sbjct: 1116 YGLQYWIYTVVLHR 1129


>gi|284033230|ref|YP_003383161.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283812523|gb|ADB34362.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 1076

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 134/977 (13%), Positives = 285/977 (29%), Gaps = 147/977 (15%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + I   L        S        ++             L+  S  +       
Sbjct: 85  AATELRDRITTRLGRTTRSMPSMTFHSFCYALLRRFTPADAFDVPLRLPSGPEQSLRLSE 144

Query: 68  LLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           +L            +++    +    + +++  + K++   + +     +     ++   
Sbjct: 145 VLGGSREVGVVHWPRSLHPALKTRGFTDEVQAVIGKARQ--LGLDPEDLSAIGQSASRPE 202

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y +      VLD+ +LI     L ++ +    ++ K+ +E   + +DE Q
Sbjct: 203 WVAVGDFFEEYLQILDHEQVLDYSELIHRAVILAQQPE----VQAKLREEFKVVFVDEYQ 258

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT   Q ++++++  D           R L  VGD  QSIY+F GA+ + +LR       
Sbjct: 259 DTDPGQTKLLQAIAGD----------GRDLVVVGDPDQSIYTFRGADVRGLLRFTEEFP- 307

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
             T  G+  + I L  + R    +L    +V     N  G+          R       G
Sbjct: 308 --TVTGEPAAQIALATTRRFGTTLL----RVSRNVVNRLGVPGTLDRETFERFRNPDASG 361

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V    +V +   S    + E                         I++++    +    
Sbjct: 362 CVFGPGKVEANLYSTSGAELE------------------------HIADLLRRAHVQD-- 395

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFILTDHLAIKDLMALG 425
               +   D+ VLVR    +       R       I V V  D   L+   A++ ++   
Sbjct: 396 ---GVAWHDMAVLVRSGSRSI---PPLRRALAAAGIPVDVAGDELPLSREPAVRPMLLAL 449

Query: 426 RFILSQEDDLSF--VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           R +             +  SPL       + ++     + +      Q+         + 
Sbjct: 450 RAVADPATLTVDVVRALALSPLGAMDAGQLRRLARVLRKRDREAAGGQRLPRSSDELLRE 509

Query: 484 VI---------------------KYIHELIH-IAQFCSPHDFFTLILGAKKGRQQF---- 517
            +                     + + +  + +    +P +    +       ++     
Sbjct: 510 ALMEPLLLDEQASPAEARFVALGERLLKARNILTAGAAPDEVMWSLWSESPWLRRLRGQA 569

Query: 518 -----ISRFGNEVIDVLDEFLNFT-LRNEQNSYSSLQELISELE--QYPPTIKRAHSANH 569
                ++R  N  +D L    +      EQ  +  +   +SELE  +     +   +   
Sbjct: 570 NSGGEVARAANRDLDSLCALFDAAGRAEEQVGFKGVSAFLSELESLEIAADNRYDATYRE 629

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           N V++MT H +KGL+  +V +       +     +   + P      G+   +       
Sbjct: 630 NGVQLMTAHRSKGLQWRLVVVASVQEGQWPDLRRRGSLLEPDRLGPDGLVEPLSAG---- 685

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV---- 685
                       +   E  RL YV +TRA ++LI+        +     R   ++     
Sbjct: 686 ------------ALLAEERRLFYVAITRARERLIVTAVQAPEADGDQPSRLLAELDIPVK 733

Query: 686 ------YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                          V  ++   +           +           +E    L+     
Sbjct: 734 LVAGRPRRPLSLPGLVADLRCVLADPASSAALKRVAADKLAQLAEATDERGYPLVPTADP 793

Query: 740 PKKL-------FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ--------TFNRGL 784
            +                 ++P  L  S + T     L   L                G+
Sbjct: 794 DRWWGVRERTKSERPIAVPDQPVPLTGSALTTIVDCPLRWFLQRRAGGETPSTSAIGFGM 853

Query: 785 IIHKLLQVIFTLPEHKRKNFITSY-------CTKNAKLWPAKEYKNLLLSITRLLENPMM 837
           ++H L   + T       + +  +           +     +E      ++ R +     
Sbjct: 854 VLHTLADAVATGTLPPDADELNGWLDKVWTQLEFESAWISDRERVEAEQALRRFVAWHQG 913

Query: 838 TTAMSCDSYSEVSVSGKINCPKKDII-ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEH 895
                    SEV  S  +       + + GR+D++       I + + KT    P +   
Sbjct: 914 RP-DRRMIGSEVEFSVLLPDADHPAVQVKGRMDRVEQDADGKIRVIDLKTGRTAPTKPAV 972

Query: 896 IPYTHIAQLSIYEKILK 912
                  QL+IY++ + 
Sbjct: 973 AR---HVQLAIYQRAIA 986


>gi|56459318|ref|YP_154599.1| Rep helicase, a single-stranded DNA dependent ATPase [Idiomarina
           loihiensis L2TR]
 gi|56178328|gb|AAV81050.1| Rep helicase, a single-stranded DNA dependent ATPase [Idiomarina
           loihiensis L2TR]
          Length = 669

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 97/595 (16%), Positives = 188/595 (31%), Gaps = 121/595 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y+        +DF+DLI     LL   + +   R +  ++  ++L+DE QDT+ 
Sbjct: 164 AQVYQQYQNNLSACNAVDFDDLIRLPTQLLATNENA---RARWQKKFQYLLVDEYQDTNT 220

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+++++ L  +                VGD+ QSIYS+ GA+PK +   K+   +    
Sbjct: 221 SQYQLVKLLVGE----------RARFTVVGDDDQSIYSWRGAQPKNLALLKQDFPQ---- 266

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS   IL   + +     +       S         + G+  +V  
Sbjct: 267 ----LDVVKLEQNYRSHGRILKAANILIENNPHVFEKKLFSE-------MQYGEPISVIF 315

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                         +    A R+   I               R 
Sbjct: 316 ----------------------------GRNEEHEAERVVAEIVK---------QRFLRK 338

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + L          + +I               +KD+MA  R +++
Sbjct: 339 TPYHHFAILYRGNHQSRLFEKAL----MNNRIPYKITGGQSFFARAEVKDIMAYLRLLVN 394

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQH 483
             DD +F+ ++ +P        + +I     E   +++E  Q      + +         
Sbjct: 395 PTDDTAFLRIINTPRRGIGPQTVERIGRLSQELGCSLFEACQSPHLKTQLSTGVFQHVDV 454

Query: 484 VIKYIHELIHIA-QFCSPHDFFTLILGAKKGRQQF-----ISRFGNEVIDVLDEFLNFTL 537
               I  L   A       D    +L               ++     I  + E   +  
Sbjct: 455 FRNMIDTLARRADHQEDASDAVKQLLSEIGYEDWLFEQSPSAKAAEMRIKNVYELHRWVS 514

Query: 538 RN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                  ++    L +++S L       +        +V++MT+H +KGLE P VFLV  
Sbjct: 515 DMLKGDAEHEPMELNQVVSRLSLRDMMSRNEDDEQFEQVQLMTLHASKGLEFPQVFLVGM 574

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +  H+                                       ++  EE  RL YV
Sbjct: 575 EEGLLPHQSSID-----------------------------------ENNIEEERRLAYV 599

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           G+TRA  +L+           +  +      + +   +D   +  K  +   ++E
Sbjct: 600 GITRAQHKLVFTMAKERRQFGEKTEPQPSRFLLELPQDDLEWEHRKQKSDEEREE 654


>gi|269966191|ref|ZP_06180280.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 40B]
 gi|269829106|gb|EEZ83351.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 40B]
          Length = 1227

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 158/1016 (15%), Positives = 310/1016 (30%), Gaps = 167/1016 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMET-------GNPTIL-----KKAQTLQQASQT 59
            +     + LW  P   +SDI+ Y++ +  +       G+   L     KK   L+ A   
Sbjct: 196  TLAGEIRQLWSSPSALLSDISNYLTGAPLSLSVPAMKGSLADLHTENLKKIDELK-AQWR 254

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------ 105
            +  ++ F+L+S   + ++   +K++ T                D  +KL+K         
Sbjct: 255  ESQDDFFTLISDSDINKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEK 314

Query: 106  ---------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                        +  + F    +           ++       AK +   L F+DL+   
Sbjct: 315  TPKGSAPQHAVFEAIETFLANPISLKAPLLAHAVEHCRVMLANAKNQKQWLSFDDLLTQ- 373

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                   D S  +  +I       +IDE QDT  +Q+ +   +          ++    L
Sbjct: 374  LSASIDTDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIY--------LNNPECGL 425

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++
Sbjct: 426  FMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVQAVNQ 475

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS- 335
            VF++P++      D    I     +       ++W         Q  P    W    D  
Sbjct: 476  VFALPDSPFIYDSD----IPFLPVKYSPNAEKRIWTM-----GGQKQPALTYWLQEADDK 526

Query: 336  -LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
             LP+    + +A   A  I  ++     G   + +  K++ +QA DI VLVR   +  ++
Sbjct: 527  PLPKGEYLTRMAEATASQIQTILTQAQQGQACLVNGEKQKAVQAGDIAVLVRTGSEGRMV 586

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                + L +    SV  ++R  +      +DL  L + +L+ E+D +    L S LF   
Sbjct: 587  K---QALADQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALD 643

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               +  +           E + + A     +++ +      L  +    S       +L 
Sbjct: 644  AASLDALNND--------EVVWENAVNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLE 695

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKR 563
                 Q          +  + E L        + +  L+ L   +              +
Sbjct: 696  EGASSQGENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAENGLGGSDDQIQ 755

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               +  N V+I+T+H +KGLE  +VFL                      ++         
Sbjct: 756  RLESERNLVQIVTIHKSKGLEYDLVFLPFV-------------FSYREASEAKYYDAAND 802

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
            ++          +K   K    E  RL+YV +TRA     I      +          + 
Sbjct: 803  RTVLDITGNDASMKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGVHR 862

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                    + +   I         +    +          LE +    Q        K+L
Sbjct: 863  SAIGYLIQNGQEGGINDLYQGLTKQQDELDCVVVADPPQQLEEKYVAPQEEIHDLSAKEL 922

Query: 744  FSPIKNDINEPYIL-------------------------NPSTIDTKGKTNLESLLSDNQ 778
             +PI  +                                +    +        S+ +  +
Sbjct: 923  QNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEADLVEPERSIFTFPR 982

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPM- 836
                G  +H L + I        +           ++    +    L   I  +L  P+ 
Sbjct: 983  GARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDTVLATPLD 1042

Query: 837  -----MTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISG 866
                 +          E+     I       +                         + G
Sbjct: 1043 GKSLLLNQKAPSQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGMLKG 1102

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKD 913
             ID +   Q   ++ ++K++H          E +      + +  Q  IY   +  
Sbjct: 1103 FIDLVFEHQGKYYVLDWKSNHLGDDVTSYHGEALKSAMADHRYDLQYQIYALAVHR 1158


>gi|254453679|ref|ZP_05067116.1| UvrD/REP helicase [Octadecabacter antarcticus 238]
 gi|198268085|gb|EDY92355.1| UvrD/REP helicase [Octadecabacter antarcticus 238]
          Length = 837

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/580 (16%), Positives = 173/580 (29%), Gaps = 151/580 (26%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+   K+    DF DL+++   + +     A I     +   +IL+DE QDT++ 
Sbjct: 204 DLYAAYQHRLKELNACDFGDLLLHMVTIFQTH---ADILATYQRWFKYILVDEYQDTNVA 260

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +            + +  VGD+ QSIY + GAE   +L  ++         
Sbjct: 261 QYLWLRLLAQ----------GHKNICCVGDDDQSIYGWRGAEVGNILLFEKDFP------ 304

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V    ++  G +                       
Sbjct: 305 --GAHVVRLEQNYRSTGHILGAAAGVIDANKDRLGKTLF--------------------- 341

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + ++     ++D   +       AR I   I +M              +
Sbjct: 342 -------TDGEDGEKVRLIGHWDGEEE-------ARWIGEDIESMQRGTRGLD-----AM 382

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               + +LVR                    +           + + I+D MA  R  +SQ
Sbjct: 383 PLNSMAILVRASHQMRSFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRLAVSQ 438

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484
           +DDL+F  ++ +P     +  +  I            E   +          G +  + +
Sbjct: 439 DDDLAFERIVNTPKRGLGDKAVQTIQITARTNGVNLIEGARLCVSGGLIKGRGGNALREL 498

Query: 485 IKYIHELIHIAQFCS------------------------------------PHDFFTLIL 508
           ++ +          S                                      +   +IL
Sbjct: 499 VQGLDRWHATLHGQSQSQSNGVTRGDMADDDESVIDDGPTVEVFDGASNVNHVELAEVIL 558

Query: 509 GAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
                   + +    E    ++ L E +      +         L   LE     +  A 
Sbjct: 559 DECGYTAHWQNEKTPEAPGRLENLKELVKALENFDS--------LQGFLEHISLIMDNAK 610

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               ++V IMT+H AKGLE P V+L      +F  +                        
Sbjct: 611 DEEDDKVTIMTLHGAKGLEFPSVYLPGWEDGLFPSQRS---------------------- 648

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                     +        EE  RL YVG+TRA     I 
Sbjct: 649 ----------MDESGLKGLEEERRLAYVGITRAEKHCTIS 678


>gi|126728959|ref|ZP_01744774.1| DNA helicase II, putative [Sagittula stellata E-37]
 gi|126710889|gb|EBA09940.1| DNA helicase II, putative [Sagittula stellata E-37]
          Length = 827

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/678 (15%), Positives = 186/678 (27%), Gaps = 158/678 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y++  K+    DF DL+++   + +       +  +  +   +IL+DE QDT++ 
Sbjct: 195 RLYAEYQDRLKELNATDFGDLLLHMVTIFQTHPD---VLEQYQRWFRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L           S+ + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLA----------SAHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V     N  G                      +LW
Sbjct: 296 --GAHVVRLEQNYRSTPHILAAASGVIRGNSNRLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +    +     ++D   +       AR +   I +M          + R  
Sbjct: 333 -------TDREEGWKVRLIGHWDGEEE-------ARWVGEEIESMQNG-----TRRMRPF 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              ++ +LVR                    +           + + I+D MA  R ++S 
Sbjct: 374 SLDEMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRLVISP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-------TVYEYIQKFANCGISKFQHV 484
            DDL+F  ++ +P     +     I     E          +          G      +
Sbjct: 430 TDDLAFERIVNTPKRGLGDKAQQTIQRIARENGVPLVDGAALAIEQGAIKGKGAKALGQL 489

Query: 485 IKYIHELIHIA------------------------------QFCSPHDFFTLILGAKKGR 514
           +  +                                        S  +    IL      
Sbjct: 490 VTDLARWGQKMRGPVREITEEVGKMAAAGEAEQIFRIEYGKPEISHIELAQEILEESGYI 549

Query: 515 ----------------QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
                           ++         ++ L E +      E         L   LE   
Sbjct: 550 DSYYLPKKDPDDPNEQRKLKDAEAGGRLENLKELVKALESFEN--------LQGFLEHVS 601

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
             +      +  +V IMT+H AKGLE P VFL      +F  +       +         
Sbjct: 602 LVMDNDTDESGAKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRSMDESGV--------- 652

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                     EE  RL YVG+TRA +   I    N     +   
Sbjct: 653 -----------------------KGLEEERRLAYVGITRAEECCTISFAGNRRVFGQWQS 689

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
           +     V +       V                  +            E  +      ++
Sbjct: 690 QMPSRFVDELPEEHVEVLTPPGLYGGGGFGAAQGGFGDTSSTLETRASEANVYNSPGWKR 749

Query: 739 IPKKLFSPIKNDINEPYI 756
           +  +      +   E   
Sbjct: 750 LQARSGDRPISQPRESKT 767


>gi|229592597|ref|YP_002874716.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens SBW25]
 gi|229364463|emb|CAY52290.1| exodeoxyribonuclease V beta chain [Pseudomonas fluorescens SBW25]
          Length = 1224

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 141/1036 (13%), Positives = 283/1036 (27%), Gaps = 158/1036 (15%)

Query: 11   ESYELI--YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKA-----QTLQQASQTQCIE 63
            E  E +   K  W     ++ DI      +       +  +      + +   +  + +E
Sbjct: 224  ERREALQTLKAPWQQWAAELRDICLQAVAAKTVDGRKMQARYFEPWFEKISAWAADETLE 283

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            +         LT     +     +    + P +      +        D   T       
Sbjct: 284  QLDIGTGFTRLTPDGMAEAW---KGEPPQHPGI-----DAMAGLKAALDALPTPDAA--- 332

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                  A ++   +E+ K++   + F+D++I  N  L+  D    +   I ++    LID
Sbjct: 333  -VLQHAAGWVGKRFEDEKRRRAEMGFDDMLIRLNAALQA-DGGERLASVIREQFPVALID 390

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT  +Q+ +  S+          +     LF +GD KQ+IY+F GA+    LR ++ 
Sbjct: 391  EFQDTDPVQYSIFDSIYR-----IEENHLDSGLFLIGDPKQAIYAFRGADIYTYLRARQ- 444

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                            L  +FRS+  ++  V+ VF   E  +G          +  + + 
Sbjct: 445  --------STTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAFLFRE---PNGENPVP 493

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIGTDTI 362
                +    +   Q + Q  P    W    D  +        LA   A  I  ++     
Sbjct: 494  FHSVLSQGRKEQLQVNGQTLPAMNLWHLPTDQPVSNAVYRQQLAAACATHIVELLNGGQQ 553

Query: 363  FSNGKKRV------IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
             + G  R       +   DI +LVR  K+   +             SV  +D+  +    
Sbjct: 554  GTAGFLRPDVSFTGVLPSDIAILVRDGKEAQAVRTELAA---RGVRSVYLSDKDSVFAAQ 610

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
               DL+A  +     + +      L     N S  ++ ++           E   +    
Sbjct: 611  EAHDLLAWLKACAEPDVERPLRAALACVTLNLSLPELERLNQD--------ELAWESRVM 662

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                ++ + +    L  + +          ++    G +   +         L E L   
Sbjct: 663  QFRGYRAIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLL------HLSELLQQA 716

Query: 537  LRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                    + ++ L   L               ++   V+++T+H +KGLE  +VFL   
Sbjct: 717  ASELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFI 776

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             S          +H                +S        +LI         E  RLLYV
Sbjct: 777  CSAKPVDGSRLPLHYHDEHG----------KSHVSLRPTPELIAQADNERLAEDLRLLYV 826

Query: 654  GMTRASDQLIICKHSNTSNEK----------------KSNQRTWYDMVYDSFHNDERVKK 697
             +TRA     +                           ++      +             
Sbjct: 827  ALTRAKHACWLGIADLKRGNSNSSVLHLSALGYLLGAGASLGESAGLARWLLDLQAGCPA 886

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
            I           + +          PL  +    +                +        
Sbjct: 887  IDYAQVPEAQPIVFHPPRNEATLRAPLLPKRKAAENWWIASYSALRIGDSMSAATLEAPE 946

Query: 758  NPSTIDTKGKTNLESLLSDNQTFN------------RGLIIHKLLQVIFTLPEHKRKNFI 805
            +P          L+         +             G  +H LL+       +     I
Sbjct: 947  SPQAQKLFDDERLDPDAPREVAASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFNVTPEAI 1006

Query: 806  TSYC-TKNAKLWPAKEYKNLLLSITRLLENP------------------MMTTAMSCDSY 846
                  +  +         L   +  LL+ P                   M    +    
Sbjct: 1007 EKAVGARCNRRNWEGWIITLSGWLGHLLQTPLPVDNGHVSLNGLQQYQIEMEFWFASHKV 1066

Query: 847  SEVSV---------SGKINCPKKDIIIS----GRIDQISISQQNIFIFEYKTHHHVPQEI 893
              +++         SG      + ++++    G ID         ++ +YK++   P + 
Sbjct: 1067 DVLALDKLVCQYTHSGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGPDDS 1126

Query: 894  EHIPY---------THIAQLSIYEKILKDSYP--------NKSLVCLLI-YVSE------ 929
             +             +  Q  +Y   L             ++ +   L  ++        
Sbjct: 1127 AYTQDAMEQSILEHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRGTRSASQ 1186

Query: 930  PKVFIIPQNKLNKAFA 945
               F  P   L +   
Sbjct: 1187 GAYFTRPPRDLIEGLD 1202


>gi|83643631|ref|YP_432066.1| DNA-dependent helicase II [Hahella chejuensis KCTC 2396]
 gi|83631674|gb|ABC27641.1| Superfamily I DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 721

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 120/746 (16%), Positives = 248/746 (33%), Gaps = 135/746 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   ++                 + ++ ++L            
Sbjct: 30  GAGSGKTRVLVHRMAWLIQVERIGAHAIMAVTFTNKAAREMRERVESLLHIPTRGMWLGT 89

Query: 66  FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L    ++    +N    + + +   LK  +++   +  K   R         
Sbjct: 90  FHSLAHRLLRAHWREAGLPENFQVIDSDDQQRMLKRVIRELGLDESKWPARQAQYFINSQ 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAW 168
                    +   + A       +   Y+E  +++ ++DF +L++ +++L L+K D    
Sbjct: 150 KDEGLRPDNIEPGSDAWRQTMNKIYQRYDEYCRQSGLVDFGELLLRSHELWLQKPD---- 205

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     Q   HIL+DE QDT+ IQ+  +R L  D             +  VGD+ QSIY 
Sbjct: 206 LLRHYQQRFQHILVDEFQDTNTIQYAWLRVLAGD----------RVPMTVVGDDDQSIYG 255

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + + R +            + +++ L  ++RST  IL   + V +   +  G  
Sbjct: 256 WRGAKIENIQRFQNDF--------GEAALVRLEQNYRSTQTILRAANHVIAHNPSRLGK- 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               QLW         Q   +     + F+   +       A  
Sbjct: 307 --------------------QLW-------TDQGEGEAIDVYAAFNEQDE-------ANY 332

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I  ++ + +                 ++ +L R    + ++          + +      
Sbjct: 333 IVESVQSWVNQGR----------SRSEVALLYRSNVQSRVLEEAL----IRHGVPYRIYG 378

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D L +K+ +A  R     +DD +F  ++  P        +  +    R    +++
Sbjct: 379 GLRFYDRLEVKNAVAYLRLAHFADDDAAFERVVNIPSRGVGAKSLETLRDAARERRGSLW 438

Query: 468 EYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                  + G+ K       +H I+ +  L   A+  S  D    +L      +   +  
Sbjct: 439 RTSVAAVSAGLIKGKAGAGLKHFIEIVENLREFAKENSLQDLTKHMLEVSGILEHHANEK 498

Query: 522 GNEVI---DVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTV 577
           G++     + L E +N     E     S L E +++         R    + + V++MT+
Sbjct: 499 GDKAEARKENLLELVNAVAEYETLDNESPLAEFLTQAALDAGE--RQAEVDQDAVQLMTL 556

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+VFL     ++F H                                     
Sbjct: 557 HSAKGLEFPLVFLTGMEEELFPHSMAL--------------------------------- 583

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             +    EE  RL YVG+TRA ++L++    +     +    +    V +  +   R  +
Sbjct: 584 -EEAGRLEEERRLCYVGITRAMEKLVLTFAESRRLYGQDKYHSISRFVREIPNELLREVR 642

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTP 723
           ++   S                    
Sbjct: 643 LRSVVSKPMFWDRGPAHGAIGESAQQ 668


>gi|254441324|ref|ZP_05054817.1| UvrD/REP helicase domain protein [Octadecabacter antarcticus 307]
 gi|198251402|gb|EDY75717.1| UvrD/REP helicase domain protein [Octadecabacter antarcticus 307]
          Length = 833

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/576 (17%), Positives = 178/576 (30%), Gaps = 147/576 (25%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y++  K     DF DL+++   + +     A +     +   +IL+DE QDT++ 
Sbjct: 204 DLYAAYQQRLKDLNACDFGDLLLHMVTIFQTH---ADVLATYQRWFKYILVDEYQDTNVA 260

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +            + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 261 QYLWLRLLAQ----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 304

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V    ++  G +                       
Sbjct: 305 --GAHVVRLEQNYRSTGHILGAAAGVIDANKDRLGKTLF--------------------- 341

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + ++     ++D   +       AR I   I +M              +
Sbjct: 342 -------TDGEDGEKVRLIGHWDGEEE-------ARWIGEDIESMQRGTRGLD-----AM 382

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               + +LVR                    +           + + I+D MA  R  +SQ
Sbjct: 383 PLNSMAILVRASHQMRSFEDRF----LTIGLPYRVIGGPRFYERMEIRDAMAYFRLAVSQ 438

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHV 484
           +DDL+F  ++ +P     +  +  I  T R     + E  +   N       G +  + +
Sbjct: 439 DDDLAFERIVNTPKRGLGDKAVQTIQMTARSNGVNLIEGARLCVNGGLIKGRGGNALRDL 498

Query: 485 IKYIHELIHIAQFCS--------------------------------PHDFFTLILGAKK 512
           ++ +          S                                  +   +IL    
Sbjct: 499 VQGLDRWHGQLHCRSNGATRRELLDDEDSVIDDGPTVEVFDGASNVNHVELAEVILDECG 558

Query: 513 GRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
               + +    E    ++ L E +      +         L   LE     +  A     
Sbjct: 559 YTAHWKNEKTPEAPGRLENLKELVKALENFDS--------LQGFLEHISLIMDNAKDEED 610

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V IMT+H AKGLE P V+L      +F  +                            
Sbjct: 611 DKVTIMTLHGAKGLEFPSVYLPGWEDGLFPSQRS-------------------------- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                 +        EE  RL YVG+TRA     I 
Sbjct: 645 ------MDESGLKGLEEERRLAYVGITRAEKHCTIS 674


>gi|256819097|ref|YP_003140376.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
 gi|256580680|gb|ACU91815.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271]
          Length = 1060

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 134/924 (14%), Positives = 266/924 (28%), Gaps = 123/924 (13%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL-----LSSFFLTQKFTPQKNIIT 86
              ++ L  E G          L +       +            +  L  +     +   
Sbjct: 239  QDFMQLMCEHGLDKGAFNGGHLYKFFDNLTADNPKEPSWGSGWQNNLLEGEPLYSGSAAK 298

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +        L+E +        K              +  L L   +    E  K++  +
Sbjct: 299  KYDTALIDSLQEMIANLFLAIKKAFGALAFANNALRYVVPLALLNRIQKEIETIKEEENI 358

Query: 147  L---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
            L   +F  +I +          + +I  +I ++  H  IDE QDTS++QW+    L  + 
Sbjct: 359  LPIWEFNGVISSEL----SNQPAPFIYERIGEKFRHYFIDEFQDTSVLQWQNFIPLILNA 414

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
               +  ++   ++  VGD KQSIY + G + +   +   +          K  + +L  +
Sbjct: 415  VQSE-VNNKCGSVLLVGDAKQSIYRWRGGKAE---QFMSLYNNEVNPFRIKGEVKDLNEN 470

Query: 264  FRSTADILTVVDKVFS------IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            FRS   I+   +  F         E  + L ++ST                     +   
Sbjct: 471  FRSLEAIIDFNNHFFKFAADLFQSETYKELYKNSTQEYPKNKKDQSLPEGYFNLSFIEVG 530

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
             +     +        + +            I   I +                  KDI 
Sbjct: 531  EEEVPTEE-----DNSNVVALSPRERSYCEAILEKIEHANRAGAAD----------KDIT 575

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +LVR  ++   +       + +    V+  D  +L +  +++ L+ L R +   E +   
Sbjct: 576  ILVRTNREGAAVASFLSEHQRN----VISPDSLLLKNVASVQFLVTLLRLLYHPESEELK 631

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
            + +L   L                  +   +     +          +   H  I +   
Sbjct: 632  LQLLFDYLR----------------FKETKDPHLFLSKYVEKPVNTFLADFHFSIELFNQ 675

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
             S ++   L +                    L  F++     +      L + +   +  
Sbjct: 676  YSLYEGVALAVN--------CFDLARSSDAYLTHFMDIVFDFKNARKGGLADFLEFWDDQ 727

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS-HKHIKKMHIMPSLNDDP 616
               +  +     N + +MTVH +KGL +PV+      S++   H       +     +  
Sbjct: 728  QEKLSISSPEGLNAITVMTVHKSKGLSAPVIIYAFADSKLIDTHTEKLWFPVNHEQFNGF 787

Query: 617  GIPIWIPQSKS--RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
               +          +    +L+  L +        +LYV MTR    L I    + S+  
Sbjct: 788  DYLLVNSNKSLVNYDAQAEELMMQLHEQNLLNQLNVLYVAMTRPESFLYIITSLSKSSAG 847

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                                   +         +W               E++E      
Sbjct: 848  T-------------------YGTLFREFLEENKQWNENVVEYTFGNPVFPEKKENAAAEE 888

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
                  K    P                      +L       +   RG +IH+L   I 
Sbjct: 889  SPIPFQKGWQYP--------------NYKIATGASLLWDTHQQEALERGNLIHELFSKIT 934

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
                      +            A++Y+ L   + RLL +  +    S D   E  +  +
Sbjct: 935  Y--ATDLDTVLNDAL--QEGTLTAEQYELLQPQMERLLNDSTLAPFFSEDY--EYFMERE 988

Query: 855  INCPKKDIIISGRIDQISISQQ--NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                  +     R D+++ +     ++I +YKT    PQ        +  QLS Y + L+
Sbjct: 989  FIDANGNYF---RPDRLAYNPNTREVYIIDYKTGQPNPQ--------YHQQLSYYAQNLQ 1037

Query: 913  DSYPNKSLVC-LLIYVSEPKVFII 935
                   +    L+Y+   KV  I
Sbjct: 1038 AI--GWQVKGKYLVYLDLGKVVKI 1059


>gi|320155533|ref|YP_004187912.1| exodeoxyribonuclease V subunit beta RecB [Vibrio vulnificus MO6-24/O]
 gi|319930845|gb|ADV85709.1| exodeoxyribonuclease V beta chain RecB [Vibrio vulnificus MO6-24/O]
          Length = 1206

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 138/982 (14%), Positives = 300/982 (30%), Gaps = 153/982 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLSSFFLT 75
             K  W     ++  + +   ++  +     L +  +T+ + +++   +  +    + F  
Sbjct: 234  LKSAWRAAQPELQTLIEQSDINKRSYTKKSLPEWLETVSRWAESDTFDYHYPDKLAKFAQ 293

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
             +   +    T  ++     +   L         +          +   A L        
Sbjct: 294  SELLAKTAKGTAPMHPLFEQIDAFLANPASLKAPLL-----AHAIEQCRAWLA------- 341

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
               +AK++   L F+DL+   +  +  +D +  +  +I       +IDE QDT  +Q+ +
Sbjct: 342  ---KAKEQKQRLSFDDLLTRLSAAI-DQDEAQLLASRIRTLYPVAMIDEFQDTDPLQYSI 397

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
               +  D             LF +GD KQ+IY F GA+    ++ +       T      
Sbjct: 398  FSRIYLD--------HPQTGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT------ 443

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
                L  ++RS+A++++ V+++F  P++     +D    I             ++W    
Sbjct: 444  ----LGTNWRSSAEMVSAVNQIFQQPDSPFIYDQD----IPFLPVNASPKADQRIW---- 491

Query: 316  SQHDSQCNPQQESWTSYFDS--LPQESSASILARRIAYTISNMI-----GTDTIFSNGKK 368
                 Q  P    W    +   + +     ++A   A  I  ++     G  +     ++
Sbjct: 492  -NMAGQKQPALTYWLQECEEKPVAKGEYQQVMAEATASQIQQILTLSQQGQASFQQGEQQ 550

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              IQA DI VLVR   +  LI             SV  ++R  +      +D+  + + +
Sbjct: 551  HAIQAGDIAVLVRTGSEGRLIKQTLA---KQGIASVYLSNRDSVFLSPVAQDVQRILQAV 607

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L+ EDD +    L   LF      + K+    +  E      +++    +S  + V+  +
Sbjct: 608  LTSEDDRALRAALACELFALDAASLDKLNNDENAWEKALSEFKEYRKLWLS--RGVMPML 665

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              ++              +L  ++G +             L E L        + +  L+
Sbjct: 666  RAVMAKRH------IAERLLTQQEGERTLTDLM------HLAELLQQASNEIDSDHGLLR 713

Query: 549  ELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                 +              +   +  N V+I+T+H +KGLE  +VFL            
Sbjct: 714  WFAQSISDAHNGIGGSDEQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFV--------- 764

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                      ++         ++          ++   K    E  RL+YV +TRA    
Sbjct: 765  ----FAHREASEAKFYDAQTDRTVLDITGSDAALQQADKERLAEDLRLIYVALTRAVYGC 820

Query: 663  IICKHSNTSNEKKSNQ-----RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             I      +                 +V +         +  L     + + I       
Sbjct: 821  FIGAAPLRNGRSTKEPTGVHRSAMGYLVQNGQEGGIATLQQALAGQQTQSDSIVVTSPPT 880

Query: 718  HPEN--TPLEREETIKQLMDEQKIPKKLFS-----------PIKNDINEPYILNPSTIDT 764
             P+    P+          +      +L+              ++D +    +    ID+
Sbjct: 881  LPDERYQPIAAPALALSAQELATPIDRLWRITSYSGLVKQGSHQSDYDASLEVVGFDIDS 940

Query: 765  KGKTN-------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK-LW 816
              +          +S+ +  +  + G  +H L + +        +           K L 
Sbjct: 941  SAEDPQAPVQEVEKSIFTFPRGASAGTFLHSLFEEVEFTQAADSEQNRQVISELMEKNLI 1000

Query: 817  PAKEYKNLLLSITRLLENP-MMTTAM-----SCDSYSEVSVSGKINCPKK---------- 860
              +    L   +  +L  P                  E+     I               
Sbjct: 1001 DLEWLPVLQQLVDTVLSTPLDGKHLYLNQKTPSQRLVEMEFLLPIEVLSAASLNQVIQRH 1060

Query: 861  ---------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHI 896
                             ++ G ID +   Q   ++ ++K++H             +   +
Sbjct: 1061 DPLSARAGDLGFQTVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDAVHLYHGEALQGAMV 1120

Query: 897  PYTHIAQLSIYEKILKDSYPNK 918
             + +  Q  IY   L     ++
Sbjct: 1121 DHRYDLQYQIYALALHRFLRSR 1142


>gi|153825966|ref|ZP_01978633.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2]
 gi|149740283|gb|EDM54424.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2]
          Length = 1208

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 125/893 (13%), Positives = 263/893 (29%), Gaps = 134/893 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    +      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   L  D             L  +GD K
Sbjct: 366  DEQGLLGERIRTLYPMAMIDEFQDTDPLQYSIFSRLYLD--------HPQCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASSGADKRHWTLEGQVQPALTYWWPEDLDKP---QSKTDYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L +   
Sbjct: 521  QMAEACAAQIQHILTASASGAAAFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSHQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLVESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++     +    +        + 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDVESATTWVDLTGNEEA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------ 683
            +    +    E  RLLYV +TRA     I      +        + +             
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGVAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 684  --------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                     ++    N   V++        +                  +  +   ++  
Sbjct: 851  GGIADLQQALFKQCENLPDVEQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTS 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLII 786
               +  +      + + E  +L     D       +    +          +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +        +           ++   ++    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAHSEPNTKIILDLMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            Q   ++ ++K++H       + P           +  Q  IY   L     ++
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|323499661|ref|ZP_08104629.1| ATP-dependent DNA helicase Rep [Vibrio sinaloensis DSM 21326]
 gi|323315262|gb|EGA68305.1| ATP-dependent DNA helicase Rep [Vibrio sinaloensis DSM 21326]
          Length = 672

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/686 (14%), Positives = 225/686 (32%), Gaps = 137/686 (19%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKSGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRSLLSAISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +          K       L  +    Y++  K    LDF+DLI     LL+  +    +
Sbjct: 146 MLTPDQVKAQAKGEQQ--QLFAFCFEMYQKQMKAYNALDFDDLIALPVLLLRTNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ +  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNTSQYELVKLIVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    S 
Sbjct: 251 RGAKPQNLVLLGEDYP--------SLRLIKLEQNYRSTSRILRAANILIANNPHVYEKSL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S                               + ++       +           A R+
Sbjct: 303 FSEIP----------------------------DGEKLKVLLAKN-------EEHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                    T  + ++      + KD  +L R    + LI           ++    +  
Sbjct: 328 ---------TGELIAHKFLNRTEYKDYAILYRGNHQSRLIEKSL----MQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++E
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFE 434

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               +    ++ ++   A+     +    ++              
Sbjct: 435 ASFELGLEQSLSGRGLENLRRFTAWLVKIADQAERGDTVEAVRSLVRDINYEDWLYETSS 494

Query: 520 --RFGNEVIDVLDEFLNFTLR------NEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             +     +  + +  ++ +        +Q    +++E++  L       +     + + 
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNYDQEE-KTIKEVVQRLTLRDMMERGEEDDDSDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H +KGLE P V+L+ +   +  H+                              
Sbjct: 554 VQLMTLHASKGLEFPYVYLIGSEEGILPHQTSID-------------------------- 587

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                    +   EE  RL+YVG+TRA  +L            +  + T    + +   +
Sbjct: 588 ---------EDNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFD 638

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTH 717
           D   +  K   S  +          +
Sbjct: 639 DVEWEATKKPQSAEERMAKGQAHIAN 664


>gi|307824971|ref|ZP_07655193.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
 gi|307734018|gb|EFO04873.1| UvrD/REP helicase [Methylobacter tundripaludum SV96]
          Length = 667

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/581 (16%), Positives = 195/581 (33%), Gaps = 119/581 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A +L   Y  + K    +DF+DLI+    L ++      I  K   +I ++L+DE QDT+
Sbjct: 164 AAHLYVDYTRSLKAYNAVDFDDLILLPVLLFQQHPA---ILEKWQNKIRYLLVDEYQDTN 220

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q++++R +  +                VGD+ QSIY++ GA+P+ + + ++   +   
Sbjct: 221 ITQYQLVRLIAGNL----------GRFTVVGDDDQSIYAWRGAQPENLAQLQKDYAR--- 267

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL V +++ +   +A      S                  
Sbjct: 268 -----LQVIKLEQNYRSTGRILKVANQLIANNPHAFEKRLWS------------------ 304

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                           +  +      L       I A++I   I           +  K 
Sbjct: 305 ----------------ELGYGDPLRVLS-HKDEQIEAQQIVSEI---------IHHKFKT 338

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  +L R    + L     R       I    +       +  IKD++   R  +
Sbjct: 339 GSNYQDYAILYRGNHQSRLFEKGLRE----NNIPYFISGSTSFFAYSEIKDILGYLRLFV 394

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQ 482
           +Q+DD +F+ ++ +P        + K+         +++    +       +   + + +
Sbjct: 395 NQDDDAAFLRVINTPKREIGPSTLEKLGAYANERHISLFAASTEFGLSQKLSEKAMHRLE 454

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVID----VLDEFLNFTL 537
               ++ +                 +      Q         E  D     + E + +  
Sbjct: 455 KFRDWVIDTADRIDRGDTFAVIEQFIDQIGYSQHLQEESKTKESADRKLKNVYELVEWLR 514

Query: 538 ---RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E +    L E+++++       +       ++V +MT+H AKGLE P VFL+   
Sbjct: 515 RIADKETDGQKPLAEIVAKIMLMDIMERNQEDEASDQVSLMTLHAAKGLEFPHVFLIGIE 574

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +  H++                                    ++    EE  RL YVG
Sbjct: 575 ENILPHQNS-----------------------------------IETDNIEEERRLAYVG 599

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +TRA         ++     +  +      + +   +D   
Sbjct: 600 ITRAQRTCTFSYCTHRKRYGEVAECEPSRFLSELPADDLEW 640


>gi|330505760|ref|YP_004382629.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01]
 gi|328920046|gb|AEB60877.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01]
          Length = 727

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 119/640 (18%), Positives = 213/640 (33%), Gaps = 122/640 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +        L+  F       Q+ +I + I +   D +    K  
Sbjct: 91  TFHGLAHRLLRAHWQEAG------LAENFQILDSDDQQRLIKRVIRELGLDEQRWPAKQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  + F    +       L   + +   YE A  +  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGFRPQHIQAGGDLFLATMRGIYEAYEAACARTGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
           +     +     +   HIL+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 KPG---LLEHYQRRFRHILVDEFQDTNAVQYAWLRLLAK----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA  + + +                 +I L  ++RSTA IL   + + +   
Sbjct: 252 DQSIYGWRGARIENIQQFSSDFP--------DTQVIRLEQNYRSTAGILKAANALIANNN 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDGGDGEPLALYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  TI + +  D          ++  +I +L R    + ++       K    I
Sbjct: 332 ---ARYVVETIEDALRKD---------GLKRSEIAILYRSNAQSRVLEEALLREK----I 375

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  I  I    R 
Sbjct: 376 PYRIYGGQRFFERAEIKNAMAYLRLLDGRGNDAALERIVNVPARGIGEKTIETIREYARA 435

Query: 462 ETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
               ++E I+                   I+ +  L         H    +++       
Sbjct: 436 HDVHMWEAIRLMLANKALPGRASGALAGFIELVEGLAEKVLAMPLHQMTQVVIEQSGLLA 495

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
             +      G   ++ L+E ++     E +    L  L + L            + N + 
Sbjct: 496 YHEAEKGEKGQARVENLEELVSAARAFENDEDDELTPLQAFLTHASLEAGDTQAAENEDS 555

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +++MT+H+AKGLE P+VFLV     +F HK   +                          
Sbjct: 556 IQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEEPG----------------------- 592

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        EE  RL YVG+TRA  +L+I       
Sbjct: 593 -----------RLEEERRLAYVGITRAMQKLVISYAETRR 621


>gi|126726603|ref|ZP_01742443.1| DNA helicase II, putative [Rhodobacterales bacterium HTCC2150]
 gi|126703932|gb|EBA03025.1| DNA helicase II, putative [Rhodobacterales bacterium HTCC2150]
          Length = 797

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 107/551 (19%), Positives = 180/551 (32%), Gaps = 117/551 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+   K     DF DL+++   + +  +    +  +  +   +IL+DE QDT++ 
Sbjct: 206 ELYAAYQARLKTLNACDFGDLLLHVVTIFQTHED---VLDQYQRWFKYILVDEYQDTNIA 262

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L            + + +  VGD+ QSIY + GAE   +LR +R         
Sbjct: 263 QYMWLRLLAA----------AHKNVCCVGDDDQSIYGWRGAEVGNILRFERDFP------ 306

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +++L  ++RST  IL     V S      G +                     LW
Sbjct: 307 --GAHVVKLEQNYRSTPHILAAASGVISGNSGRLGKT---------------------LW 343

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   ++   ++     ++D   +       AR I   +  +            R +
Sbjct: 344 -------TAETEGEKVRLIGHWDGEEE-------ARWIGDEVEALQRG-----TRGLRKV 384

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               + +LVR                    +           + L I+D MA  R  +S 
Sbjct: 385 SLDQMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRLAVSP 440

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484
           E+DL+F  ++ +P          KI T          E   +    +     G  +   +
Sbjct: 441 ENDLAFERIVNTPKRGLGNVAQQKIQTMARSNGVSLVEGARLLLEAKGLGGKGGVELAKL 500

Query: 485 IKYIHEL--IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           +  I     +  A   S  +   +IL        + +    E    ++ L E +      
Sbjct: 501 VNGIERWALMVRAANQSHIEIAEIILEESGYTDMWQNDKTPEAPGRLENLKELVKALENF 560

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     +  A   +  +V IMT+H AKGLE P VFL      +F 
Sbjct: 561 EN--------LQGFLEHVSLVMDNASGDDGEKVSIMTLHAAKGLEFPAVFLPGWEDGLFP 612

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +       +                                   EE  RL YVG+TRA 
Sbjct: 613 SQRSMDDSGL--------------------------------KGLEEERRLAYVGITRAE 640

Query: 660 DQLIICKHSNT 670
           +   I   +N 
Sbjct: 641 EICTISFAANR 651


>gi|90407069|ref|ZP_01215258.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3]
 gi|90311791|gb|EAS39887.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3]
          Length = 669

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/641 (15%), Positives = 212/641 (33%), Gaps = 122/641 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 K +  ++I +    LK  +    +    +       ++ K       +   L  
Sbjct: 112 DTLALLKELSVKQIQEDMDILKLLVSAISNWKNSLILPAQALRIAKGEQE--NIFAQLYD 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+   K    LDF+DLI+    LL   +    +R +  ++I ++L+DE QDT+  Q+E+
Sbjct: 170 TYQRQLKAYNALDFDDLIVLPTLLLTHNEA---VRLRWQKKIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I++L            +      VGD+ QSIYS+ GA P+ +L  +R   +         
Sbjct: 227 IKALVG----------ARARFTVVGDDDQSIYSWRGARPENLLLLQRDFSQ--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S                        
Sbjct: 269 KVIKLEQNYRSSQRILKAANILIANNPHEFEKRLFS------------------------ 304

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                      E        +    +    A R+   I           +        KD
Sbjct: 305 -----------ELAYGEPIKVLTAKNEKHEAERVVMEI---------SGHKFMNNANFKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             VL R    + L+  +        +I    +          +KD+MA  + +++Q+D+ 
Sbjct: 345 YAVLYRGNHQSRLLEKVMME----NRIPYKISGGTSFFARSEVKDIMAYLKLLVNQDDEN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHVIKYI 488
           +F+ ++  P          K+         +++    +           +   Q   + +
Sbjct: 401 AFIRVVNKPPRGIGATSREKLGTYANLRQISMFAASFEIGLEQTLSGRGLQALQAFTRRL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVID----VLDEFLNFTLRNEQ-- 541
            EL    +  +  D    ++           +    +  +     +     +     Q  
Sbjct: 461 VELNDRLKRDASVDVVRDLIRDIGYEDWLYENSPSPKAAEMQMKNVSMLFKWVTEMLQGD 520

Query: 542 --NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +   +L+++++ L       +       ++V++MT+H +KGLE P V+L+     +  
Sbjct: 521 DLDDGMTLEQVVARLTLRDMLSRNEEENELDQVQLMTLHASKGLEFPYVYLIGMEEGILP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                     + +   +E  RL YVG+TRA 
Sbjct: 581 HQVS-----------------------------------MDEDNVDEERRLAYVGITRAQ 605

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            +L        S   +  + T    +++   +D + +   L
Sbjct: 606 KELTFILAKERSQYGELIKPTPSRFLFELPQDDLQWESGPL 646


>gi|154252878|ref|YP_001413702.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
 gi|154156828|gb|ABS64045.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
          Length = 778

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 112/673 (16%), Positives = 212/673 (31%), Gaps = 125/673 (18%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA-------SQTQCIEERFSLLS 70
           +  WP     V+  NK      +     I    + +Q         ++        + L 
Sbjct: 76  RKAWPGQILAVTFTNKAAREMRDRIGALIGGVVEGMQWLGTFHALGAKILRRHAELAGLR 135

Query: 71  SFFLTQKFTPQKNIITQEI-NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
           S F       Q  ++ Q I  +   + +   ++        ++R  T     +  A    
Sbjct: 136 SDFTILDADDQMRLMKQIIVAEGIDEKRWPARQLASHIDGWKNRGLTPDKVPAGEA-HAF 194

Query: 130 A----KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           A      L A Y+   K     DF DL++    + ++      +         ++L+DE 
Sbjct: 195 ANGKGGELYAAYQARLKVLNAADFGDLLLEVLRIFQEHPE---VLADYQDRFKYMLVDEY 251

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT++ Q+  +R L +            + +  VGD+ QSIY + GAE   +LR ++   
Sbjct: 252 QDTNVAQYLWLRLLAQ----------KHKNICCVGDDDQSIYGWRGAEVDNILRFEKDF- 300

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      ++ L  ++RSTA+IL     + +  E   G +                 
Sbjct: 301 -------SGAKVVRLERNYRSTANILGAASGLIAANEQRLGKT----------------- 336

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW        +          SY+D   +  + +    ++                
Sbjct: 337 ----LW-----TEANDNEGDPIKIASYWDGEEEARAIAEEVEQL---------------- 371

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            ++     +D+ +LVR                 +  I           +   I+D  A  
Sbjct: 372 -QRNAHLLRDMAILVRASFQMREFEDRF----INLGIPYRVVGGPRFYERAEIRDANAYL 426

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY------EYIQKFANCGI 478
           R +   +DDL+F  ++  P     +  +  I    R E  T++         ++      
Sbjct: 427 RLVAQPDDDLAFERIVNKPRRGLGDVAVQTIHRLARAENTTLFRASKMLAASEELKPAAR 486

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
                 I+ +     +       +   +IL      + + +    +    L+        
Sbjct: 487 RALASFIEQVDRWRALVPGMPHTELAEIILDESGYTEMWQNDKSADAPGKLENLKELVRS 546

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E +       L   LE     ++   S   +++ +MT+H+AKGLE   VFL      +F
Sbjct: 547 MEFHET-----LAGYLEHISLVMEMEQSDTADKINLMTLHSAKGLEFETVFLPGWEEGLF 601

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                  +     +  EE  RL YVG+TRA
Sbjct: 602 PHQR--------------------------------ALDESGLAGLEEERRLAYVGITRA 629

Query: 659 SDQLIICKHSNTS 671
             +  I   +N  
Sbjct: 630 KQRAYISFAANRR 642


>gi|329943325|ref|ZP_08292099.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10]
 gi|313848473|emb|CBY17477.1| DNA helicase II, UvrD [Chlamydophila psittaci RD1]
 gi|325507016|gb|ADZ18654.1| ATP-dependent DNA helicase [Chlamydophila psittaci 6BC]
 gi|328814872|gb|EGF84862.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10]
 gi|328915165|gb|AEB55998.1| ATP-dependent helicase PcrA [Chlamydophila psittaci 6BC]
          Length = 637

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/550 (17%), Positives = 169/550 (30%), Gaps = 117/550 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +   LDF+DL+  T  L ++      +R +  +    +LIDE QDT+  Q
Sbjct: 166 IYKEYQQRLHEANALDFDDLLFLTVRLFQEFPE---VRKEYSELWKALLIDEYQDTNHAQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++ +++              + +FAVGD  QSIYS+ GA    +L  ++   +      
Sbjct: 223 YKIAQTIAG----------KHQNIFAVGDPDQSIYSWRGANIHNILNFEKDYPRAL---- 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RS  +IL   + +     +       S                     
Sbjct: 269 ----VLRLEDNYRSYGNILNAANALIQNNASRLKKDLRSVK------------------- 305

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +   +    D           A  +A  IS +              I 
Sbjct: 306 --------GPGEKIRVFLGKTDKEE--------AEFVADEISRLHRRSQ---------IP 340

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             DI +  R    +              +I               I+D++A  R   ++ 
Sbjct: 341 LSDICIFYRTNFQSRTFEDAL----LRRRIPYEILGGLSFYKRKEIQDILAFLRMFTAKS 396

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ--------KFANCGISKFQH 483
           D ++F   +  P        I  +          + E           K +       + 
Sbjct: 397 DVVAFDRTVNLPKRGLGPSTISSLIEYALTNNLPILEACNNVLKTQDVKLSKKQQEGLRE 456

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQ 541
            +    +L H       ++F    +      Q          +    LDE  + T   EQ
Sbjct: 457 YLSIFQQLEHAYATLPLNEFVVATIRITGYFQVLKEDPDTFEDRKSNLDELASKTFEWEQ 516

Query: 542 NSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +    L+  + +L     T      A  + V +MT+H  KGLE  + F+V     +F H
Sbjct: 517 QNTDGTLENFLDDLALKSSTDDTELVA--DRVNLMTIHNGKGLEFRIAFVVGLEENLFPH 574

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            + K  +                                     EE  RL YVG+TRA D
Sbjct: 575 ANSKGSY----------------------------------ENLEEERRLCYVGITRAQD 600

Query: 661 QLIICKHSNT 670
            L +      
Sbjct: 601 LLYLTAAQTR 610


>gi|37680798|ref|NP_935407.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016]
 gi|37199547|dbj|BAC95378.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016]
          Length = 1221

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 136/982 (13%), Positives = 298/982 (30%), Gaps = 153/982 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLSSFFLT 75
             K  W     ++  + +   ++  +     L    +T+ + ++++  +  +    + F  
Sbjct: 249  LKSAWRAAQSELQTLIEQSDINKRSYTKKSLPDWLETVNRWAESETFDYHYPDKLAKFAQ 308

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
             +   +    T  ++     +   L         +          +     L        
Sbjct: 309  SELLAKTAKGTAPMHPLFEQIDAFLANPASLKAPLL-----AHAIEQCRVWLA------- 356

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
               +AK++   L F+DL+   +  +  +D +  +  +I       +IDE QDT  +Q+ +
Sbjct: 357  ---KAKEQKQRLSFDDLLTRLSAAI-DQDEAQLLASRIRTLYPVAMIDEFQDTDPLQYSI 412

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
               +  +             LF +GD KQ+IY F GA+    ++ +       T      
Sbjct: 413  FSRIYLE--------HPQTGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT------ 458

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
                L  ++RS+A+++  V+++F  P++     +D    I             ++W    
Sbjct: 459  ----LGTNWRSSAEMVAAVNQIFQQPDSPFIYDQD----IPFLPVNASPKADQRIW---- 506

Query: 316  SQHDSQCNPQQESWTSYFDS--LPQESSASILARRIAYTISNMI-----GTDTIFSNGKK 368
                 Q  P    W    +   + +     ++A   A  I  ++     G  +     ++
Sbjct: 507  -NMAGQKQPALTYWLQECEEKPVAKGEYQQVMADATASQIQRILTLSQQGQASFQQGERQ 565

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              IQA DI VLVR   +  LI             SV  ++R  +      +D+  + + +
Sbjct: 566  HPIQAGDIAVLVRTGSEGRLIKQTLA---KQGIASVYLSNRDSVFLSPVAQDVQRILQAV 622

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L+ EDD +    L   LF      + K+    +  E      +++    +S  + V+  +
Sbjct: 623  LTSEDDRALRAALACELFALDAASLDKLNNDENAWEKALSEFKEYRKLWLS--RGVMPML 680

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              ++              +L  ++G +             L E L        + +  L+
Sbjct: 681  RAVMAKRH------IAERLLTQQEGERTLTDLM------HLAELLQQASNEIDSDHGLLR 728

Query: 549  ELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                 +              +   +  N V+I+T+H +KGLE  +VFL            
Sbjct: 729  WFAQSISDAHNGIGGSDEQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFV--------- 779

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                      ++         ++          ++   K    E  RL+YV +TRA    
Sbjct: 780  ----FAHREASEAKFYDAQTDRTVLDITASDAALQQADKERLAEDLRLIYVALTRAVYGC 835

Query: 663  IICKHSNTSNEKKSNQ-----RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             I      +                 +V +         +  L     + + I       
Sbjct: 836  FIGAAPLRNGRSTKEPTGVHRSAMGYLVQNGQEGGIATLQQALAGQQTQSDSIVVTSPPT 895

Query: 718  HPEN--TPLEREETIKQLMDEQKIPKKLFS-----------PIKNDINEPYILNPSTIDT 764
             P+    P+          +      +L+              ++D +    +    ID+
Sbjct: 896  LPDEQYQPITTPALALSAQELATPIDRLWRITSYSGLVKQGSHQSDYDASLEVVGFDIDS 955

Query: 765  KGKTN-------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK-LW 816
              +          +S+ +  +  + G  +H L + +        +           K L 
Sbjct: 956  SAEDPQAPVQEVEKSIFTFPRGASAGTFLHSLFEEVEFTQAADSEQNRQVITELMEKNLI 1015

Query: 817  PAKEYKNLLLSITRLLENP-MMTTAM-----SCDSYSEVSVSGKINCPKK---------- 860
              +    L   +  +L  P                  E+     I               
Sbjct: 1016 DLEWLPVLQQLVDTVLSTPLDGKHLYLNQKTPSQRLVEMEFLLPIEVLSAASLNQVIQRH 1075

Query: 861  ---------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHI 896
                             ++ G ID +   Q   ++ ++K++H             +   +
Sbjct: 1076 DPLSARAGDLGFQTVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDAVHFYHGEALQGAMV 1135

Query: 897  PYTHIAQLSIYEKILKDSYPNK 918
             + +  Q  IY   L     ++
Sbjct: 1136 DHRYDLQYQIYALALHRFLRSR 1157


>gi|146301512|ref|YP_001196103.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101]
 gi|146155930|gb|ABQ06784.1| ATP-dependent DNA helicase, Rep family [Flavobacterium johnsoniae
           UW101]
          Length = 787

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/567 (17%), Positives = 195/567 (34%), Gaps = 108/567 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L+  +   Y +  K+N  LDF+DLI  T  +L        +  K  Q +++I +DE QD+
Sbjct: 172 LSSRIFQIYLDKLKRNYALDFDDLIHFTAFILDHNPD---VLLKWQQNLHYIQVDEAQDS 228

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           S  Q+ ++  L+             + LF VGD  Q+IY + GA+P+ ++    +     
Sbjct: 229 SENQFHLVEILSR----------VHQNLFLVGDPDQTIYEWRGAKPEYLVEFDSMFP--- 275

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I +  ++RST +IL + + +             +                 
Sbjct: 276 -----DTQTIIMNRNYRSTPNILKIGNHIIKNNTVRVDKDMITDKPEGF----------- 319

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                           +   +    D            + IA  I  ++  +        
Sbjct: 320 ----------------EVVHFHGKNDFEES--------QWIASEIKEILQAEQ------- 348

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 DI +L R    +  I            I           +   IKD+++L R I
Sbjct: 349 --AAYSDITILYRSNHLSRNIEQAL----IKDNIPYSIFGGIRFFERKEIKDVLSLLRLI 402

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQ---HV 484
           +   D+ SF+ M   P     +  + ++      +  ++ + +++         +     
Sbjct: 403 VQ-GDNFSFLRMHNHPARGLGKKFLERLSLLAGEQNLSLLQALERNITDKELAKKGAVEF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           ++ I EL   A+  S  D   +IL      + +      + ++ + E +N  L  E+ + 
Sbjct: 462 LELIAELRETAKTKSISDLVKIILDKSGLSELYRKDGDEDRLENIKELVNSMLLLEKENN 521

Query: 545 SSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           + + ++I  L++    T     + N ++V++MT+H +KGLE P VFL      V      
Sbjct: 522 APV-DIIEYLQEISLYTDLNTDTENQDKVKLMTIHISKGLEFPYVFLCGFTEGVLPS--- 577

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                        +  +K  +    EE  RL+YV +TRA  +  
Sbjct: 578 -----------------------------ALSVKERRARAIEEERRLMYVAVTRAEKRFY 608

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           +      +     N+     +      
Sbjct: 609 MTDSEGFNFTTGLNKYPSRFLFEIKDE 635


>gi|34849423|gb|AAP58922.1| ATP-dependent DNA helicase [Spiroplasma kunkelii CR2-3x]
          Length = 729

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 103/549 (18%), Positives = 180/549 (32%), Gaps = 113/549 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE+  ++   +DF DLI+ T  L K       +  K     ++ L+DE QDT+ 
Sbjct: 170 AEVYDTYEKRLREINSVDFNDLILLTYKLFKNNGE---VLKKWQNRFDYFLVDEFQDTNE 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+++I+ L  D             +  VGD  Q+IYS+ GA+   +L   +        
Sbjct: 227 LQFDIIKWLVGD----------NSNITIVGDPDQTIYSWRGAKINLILNFDKYFPH---- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST  IL++ + +    +N    +  +                  L
Sbjct: 273 ----TQTIVLNENYRSTQSILSLANNLIIHNKNRIEKNLFTIKASGQLPI---------L 319

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           +    S  +S                            +A  I  +I  +          
Sbjct: 320 YHGANSSDESD--------------------------FVARKIKTLIKEE---------N 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               DIL+L R    +  +         DY IS      F   +   IKD +A  + I++
Sbjct: 345 YDYNDILILYRANYLSRDLETAL----ADYGISYRIFGAFKFYERKEIKDALAFLKIIMN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-----EYIQKFANCGISKFQHVI 485
             D L+   +L   +         +I     + + ++     ++              V 
Sbjct: 401 -NDFLAIERILL-LIPKIGPKTFEQIMQILKDQQIMFTTLLEQHFDLLPLNLQHSLNKVR 458

Query: 486 KYI-HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ--N 542
           + I   L  +    S      L+L      Q+    +  E  + + E +    + +Q   
Sbjct: 459 EAIVLALAQLPTVKSIESLLVLLLDKTGYLQRLRDNYEEEREENILELIASIGKFDQQNK 518

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
             +  + L   L+         +  + N + +MT+H AKGLE  VVF+V     +F    
Sbjct: 519 ELAGTELLSEYLQLISLQTDSDNLTD-NTISLMTIHNAKGLEKKVVFIVGLNEGIFPTTQ 577

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
             KM                                      EE  R LYV +TR+ + L
Sbjct: 578 AIKMGT---------------------------------EQLEEERRALYVAITRSEELL 604

Query: 663 IICKHSNTS 671
            I      S
Sbjct: 605 FISYADGYS 613


>gi|15639883|ref|NP_219333.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum
            subsp. pallidum str. Nichols]
 gi|189026121|ref|YP_001933893.1| ATP-dependent nuclease, subunit A [Treponema pallidum subsp. pallidum
            SS14]
 gi|3323214|gb|AAC65853.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum
            subsp. pallidum str. Nichols]
 gi|189018696|gb|ACD71314.1| possible ATP-dependent nuclease, subunit A [Treponema pallidum subsp.
            pallidum SS14]
 gi|291060257|gb|ADD72992.1| ATP-dependent DNA helicase UvrD [Treponema pallidum subsp. pallidum
            str. Chicago]
          Length = 1239

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 146/965 (15%), Positives = 305/965 (31%), Gaps = 116/965 (12%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                        + + + F  +     +    Q I  +   L+ +L    +       + 
Sbjct: 294  ARRAAHDCLRYCAAVKTLFCLKGNLGGRAGAAQAIKAQVKQLRLQLVPQMERLHAFFAQV 353

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                     +A  +L + L A +   K++   L   D+      +L++      IR    
Sbjct: 354  ------PFLVALSSLLELLQARFIRQKRERNCLSHADVAHLAVQVLRQYPE---IRVSYK 404

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTED-----FFVGKNTHSSPRTLFAVGDEKQSIYSF 229
            + I+  +IDE QD + +Q E++  L E       F+          LF VGDEKQSIY+F
Sbjct: 405  RGIDAFMIDEFQDNNALQKELLFFLAEHEARTAHFLPPAHALCAHKLFFVGDEKQSIYAF 464

Query: 230  HGAEPKRVLR-----------EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
             GA+ +                 +     +  A  + ++  L +++R+ A +L  ++ +F
Sbjct: 465  RGADVRVFRSLAGVLTPQVSGASQQELPLSAAAELQPTLQTLRINYRTEAALLERLNILF 524

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGT----------VQLWEQVVSQHDSQ-----CN 323
            S        S ++   +  +  +  +             V        +H++Q       
Sbjct: 525  SHILRGPSESAENGYEVGFQYMQPARCTAGIEPQFRVIGVDRHRFSRPEHEAQHSAARPT 584

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVR 381
            PQ     +  DS    S+    A  +A  I  M+   T+  +     R     D+++L+R
Sbjct: 585  PQAGRTGASEDSEDSLSAQETEAWALARAIRAMVDGGTLVRHKGEAPRACTWADVVILLR 644

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                        R     + I         +     + DL+A  R +L   D   +  +L
Sbjct: 645  SADKQARYERALR----LWGIPYTSLQTRGMFCDAPLSDLLAPLRLVLEPADRHVYAQVL 700

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH-----VIKYIHELIHIAQ 496
            + P     +D +  +       +  + YI    +   ++          +   ++  +A 
Sbjct: 701  RGPFVRVDDDTLSLLLLPPAPPDAPFSYIPAELSAPAARCVRAGADFFARVQQQVRRLAT 760

Query: 497  FCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                  +            Q  ++R  + + D   E      R  +     L  + + L 
Sbjct: 761  NTELLTYLWYTEAYGTLLAQDPLARPYHVIYDYAFELARRADRQGKGIGEFLDFVDACLS 820

Query: 556  QYPPTIKRAH---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                  +            V+IM+VH +KGLE P+V + D GS        +   +    
Sbjct: 821  AQERVEELELPCTDRACGAVQIMSVHKSKGLEFPIVCVPDAGSS-GPRVMARVGAVHSPY 879

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN--- 669
               P              I         ++ + E  R+LYV  TRA   +I+        
Sbjct: 880  GYIPRFLPHPEGVH---PIFVQEQDTRARAYRAELRRVLYVAFTRAECHVIVSGVLPISD 936

Query: 670  --------------------TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
                                    +  +  +++  +  +  +   +      + +     
Sbjct: 937  GHPAPAVSRSLADICSLLPSGDGSEPPSSLSFFSELLPALMHAAPLPPHPSPSVVPAPVS 996

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPYILNPST------ 761
                     P+        + +Q + +   P+  ++  P++     P ++ P T      
Sbjct: 997  FDECLPLARPQAYQRALTGSARQSVPQASAPRDWYAAVPVRAPHYYPRLVQPVTSLVSPA 1056

Query: 762  --IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
               ++   +         +    G  +H+LL  +F  P             +        
Sbjct: 1057 PGQNSASASPSPLTPQSPRGVEFGTHVHELLAQVFQSPA---PTVALHSVQRVDSP---- 1109

Query: 820  EYKNLLLSITRLLENPMMTTAMSC---DSYSEVSVSGKINC----PKKDIIISGRIDQIS 872
                    +   L +P+   A +      ++E S   +       P      +G ID + 
Sbjct: 1110 ----AARLVACFLHSPLGCRACAAPAHQRFAEFSFLTRAPGNTKPPHGAEYQAGTIDLLF 1165

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            +S     + +YKT +      E  P  ++ QL  Y + ++D + +  +   L Y+     
Sbjct: 1166 LSNGVWHLVDYKTDY------EEHPARYLPQLQHYARAVQDLFSDHPVTAFLYYLRTGHE 1219

Query: 933  FIIPQ 937
            F +  
Sbjct: 1220 FSLEA 1224


>gi|328955121|ref|YP_004372454.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
 gi|328455445|gb|AEB06639.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
          Length = 847

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/625 (13%), Positives = 175/625 (28%), Gaps = 110/625 (17%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +    E   +    +DF+DL++ T +LL+       +     +   +I +DE QDT+
Sbjct: 172 AAKVYLELERRLRAANAMDFDDLLVRTLELLR---ARPEVLANYQERFRYISVDEYQDTN 228

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+E+   L   +            L  VGD+ QSIYS+ GA+   +L  ++       
Sbjct: 229 HVQYEIANLLAAKYE----------NLMVVGDDDQSIYSWRGADIANILDFEKDFPH--- 275

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +++L  ++RS  +IL   + V       +                        
Sbjct: 276 -----ARVVKLEQNYRSCGNILAAANAVVRNNAQRKEKRLF------------------- 311

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                        + ++       D   +        R IA  I  +  +          
Sbjct: 312 ---------TDAGDGERIRAYQASDERDEG-------RWIASEIDRLNDSG--------- 346

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +DI V  R    + ++  +         +           D   I+D MA  + ++
Sbjct: 347 -ASYEDIAVFYRTNAQSRILEDMF----LRAGVPYRIVGGTRFFDRAEIRDTMAYLKMVV 401

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF-QHVIKYI 488
           +  D++S   ++ +P        I KI     E    +    + A     +    V   +
Sbjct: 402 NPADEMSVKRVINTPRRGLGSTSIAKIEQIAIENRCSFFQACEIAMAETGRLSAKVRSAL 461

Query: 489 HELIHIAQFCSPHD-----FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            + + I       D         I+      +   +    E    ++ + EF+      E
Sbjct: 462 ADFVQIVHEGRRMDGELVRVVEAIIDRSGLIRAHHNEMTVEGEGRVENIREFMGVAAEFE 521

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA---------------KGLES 585
           +     ++  +  L +          A+   V +   H                 +  E 
Sbjct: 522 ETH-EDIEGTLESLAELRAAGVSGVPASDAGVSVRGPHAVAEDASAPSAQVSPSDRAAEI 580

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST-- 643
              +       + +      +             I +    S   +   ++         
Sbjct: 581 EDAYGPLACKALPALMEWLALRSDLDALAGGTHAITMMTVHSAKGLEFPIVFVAGLEEGI 640

Query: 644 -------------QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                         EE  RL YV +TRA  +L +   +       +        V +   
Sbjct: 641 FPHVNGFSDDPAKLEEERRLAYVAITRARRRLFLSYAATRRTYGSTQANPRSRFVSEIPD 700

Query: 691 NDERVKKIKLTNSINKDEWIAYEWS 715
                  I  +           +  
Sbjct: 701 ETISFSGIGSSGFSGTGWEKRGDRR 725


>gi|254286015|ref|ZP_04960976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226]
 gi|150423925|gb|EDN15865.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226]
          Length = 1208

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 125/893 (13%), Positives = 260/893 (29%), Gaps = 134/893 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    +      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   L  D             L  +GD K
Sbjct: 366  DEQGLLGERIRSLYPVAMIDEFQDTDPLQYSIFSRLYLD--------HPQCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP---QSKTDYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L     
Sbjct: 521  QMAEACAAQIQHILTASASGAAAFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAIASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLTESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++          +        + 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTGNEEA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------ 683
            +    +    E  RLLYV +TRA     I      +        + +             
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 684  --------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                     +     N   V +        +                  +  +   ++  
Sbjct: 851  GGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTS 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLII 786
               +  +      + + E  +L     D       +    +          +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +        +           ++   ++    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            Q   ++ ++K++H       + P           +  Q  IY  +L     ++
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALVLHRFLRSR 1143


>gi|237749450|ref|ZP_04579930.1| ATP-dependent DNA helicase Rep [Oxalobacter formigenes OXCC13]
 gi|229380812|gb|EEO30903.1| ATP-dependent DNA helicase Rep [Oxalobacter formigenes OXCC13]
          Length = 685

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/617 (16%), Positives = 189/617 (30%), Gaps = 121/617 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L +  D    +R K  + + ++L+DE QDT+
Sbjct: 166 AARIYQNYMATLSAYQAVDFDDLIRLPVELFRSND---KVREKWQRRLRYLLVDEYQDTN 222

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY++ GA  + +   +        
Sbjct: 223 TCQYELVKLLV-------TGAGKKPMFTAVGDDDQAIYAWRGATIENLKTLQDDF----- 270

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  II L  ++RS+  IL   + V          +  S           G    V+
Sbjct: 271 ---SDLKIIRLEQNYRSSTRILQAANAVIKNNPKLFEKTLWSEH---------GLGEPVE 318

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                                   A +I            + ++  +R
Sbjct: 319 V--------------------------SSMPDDEQEAEQIVMQ---------LSAHKFER 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  D  +L R      +     R       I    +          I+D+++  R I 
Sbjct: 344 HAKFSDYAILYRGNYQARIFETALR----RDNIPYTISGGQSFFARSEIRDIISYLRLIA 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEY------IQKFANCGISKFQ 482
           + +DD +F+  + +P     +  +  +     + + +++E         K A   ++  +
Sbjct: 400 NLDDDPAFIRAVTTPRRGVGQSTLETLGAFAGQWQCSLFEAVFKGGIEAKLAPRQLTPLR 459

Query: 483 HVIKYIHELIHIAQFCS-----------PHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
               +I+++   A                 +    I         F  R        + E
Sbjct: 460 EFCDFINQIEERASRPGASGKGENAAALLDELMHEIAYEAYLYDNFDERTAKTKWQNVLE 519

Query: 532 FLNFTLR------NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           F N+         +E     +L EL   +        R      + V + T+H AKGLE 
Sbjct: 520 FTNWLKDKSKGGKHEDGPEKNLLELTQMVALMTMLEGRDQE--PDAVHLSTLHAAKGLEF 577

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           P VFLV     +  H                                         +  +
Sbjct: 578 PHVFLVGVEEGILPHLGDPDTP-----------------------------AEQLATRIQ 608

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL+YVG+TRA   L I         ++  Q      + +   ++      +      
Sbjct: 609 EERRLMYVGITRAQRTLHISWCKKRKRGREIVQCEPSRFIEEMKLDEGDAPPKEDEIITP 668

Query: 706 KDEWIAYEWSTHHPENT 722
           KD     +     P+  
Sbjct: 669 KDRLANLKALLQKPKAA 685


>gi|91223408|ref|ZP_01258673.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 12G01]
 gi|91191494|gb|EAS77758.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 12G01]
          Length = 1227

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 157/1020 (15%), Positives = 306/1020 (30%), Gaps = 165/1020 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK---KAQTLQQASQTQCIEERFSL 68
            +     + LW  P   +SDI+ Y++ +  + +   +K        +   +   ++ ++  
Sbjct: 196  TLAGEIRQLWGSPSALLSDISNYLTGAPLSLSVPAMKGSLADLHTENLKKIDELKAQWRE 255

Query: 69   LSSFFLTQKFTP--------QKNIIT--------QEINKKSPDLKEKLKKSQD------- 105
                FLT   +         +K++ T                D  +KL+K          
Sbjct: 256  SQDDFLTLISSSDVNPRSYNKKSLPTWLEAVSAWAATETTGYDYPDKLEKFAQNVLLEKT 315

Query: 106  --------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
                       +  + F    +           ++  A    AK +   L F+DL+    
Sbjct: 316  PKGSAPQHAVFEAIETFLANPISLKAPLLAHAIEHCRAMLANAKNQKQWLSFDDLLTQ-L 374

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
                  D S  +  +I       +IDE QDT  +Q+ +   +          ++    LF
Sbjct: 375  SASIDTDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIY--------LNNPECGLF 426

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++V
Sbjct: 427  MIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVQAVNQV 476

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-- 335
            F++P++      D    I     +       ++W         Q  P    W    D   
Sbjct: 477  FALPDSPFIYDSD----IPFLPVKYSPNAEKRIWTM-----GGQKQPALTYWLQEADDKP 527

Query: 336  LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
            LP+    + +A   A  I  ++     G   + +  K++ +QA DI VLVR   +  +I 
Sbjct: 528  LPKGEYLTRMAEATASQIQTILTQAQQGQACLVNGEKQKAVQAGDIAVLVRTGSEGRMIK 587

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
               + L      SV  ++R  +      +DL  L + +L+ E+D +    L S LF    
Sbjct: 588  ---QALAEQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALDA 644

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
              +  +           E + + A     +++ +      L  +    S       +L  
Sbjct: 645  ASLDALNND--------EIVWENAVNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLEE 696

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRA 564
                Q          +  + E L        + +  L+ L   +              + 
Sbjct: 697  GASSQGENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAENGLGGSDDQIQR 756

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              +  N V+I+T+H +KGLE  +VFL                       +D  +      
Sbjct: 757  LESERNLVQIVTIHKSKGLEYDLVFLPFVF-----SYREASEAKYYDAANDCTVLDITGN 811

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                       +K   K    E  RL+YV +TRA     I      +          +  
Sbjct: 812  --------DASMKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGVHRS 863

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                   + +   I   +     +    +          LE +    Q        K+L 
Sbjct: 864  AIGYLIQNGQEGGINDLHQGLTKQQDELDCVVVADPPQQLEEKYVAPQEEIYDLSAKELQ 923

Query: 745  SPIKNDINEPYIL-------------------------NPSTIDTKGKTNLESLLSDNQT 779
            +PI  +                                +    +        S+ +  + 
Sbjct: 924  NPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEADLVEPERSIFTFPRG 983

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPM-- 836
               G  +H L + I        +           ++    +    L   I  +L  P+  
Sbjct: 984  ARPGTFLHSLFEEIEFTQPAATEENTQIILGLMESEQLDEEWLPILQQLIDTVLATPLDG 1043

Query: 837  ----MTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISGR 867
                +          E+     I       +                         + G 
Sbjct: 1044 KSLLLNQKAPSQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGMLKGF 1103

Query: 868  IDQISISQQNIFIFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKDSYPNK 918
            ID +   Q   ++ ++K++H          E +      + +  Q  IY   L     ++
Sbjct: 1104 IDLVFEHQGKYYVLDWKSNHLGDDVTSYHGEALKSAMADHRYDLQYQIYALALHRFLSSR 1163


>gi|303249563|ref|ZP_07335770.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|307251810|ref|ZP_07533712.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302651637|gb|EFL81786.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|306860717|gb|EFM92728.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 672

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 110/675 (16%), Positives = 224/675 (33%), Gaps = 131/675 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +    +     F       L +   P+     +++ K    L   +   +++   +    
Sbjct: 97  KLLGFKSGMTLFDEHDQLALLKHLLPENAAEDKDLLKA---LISTISNWKNDL--LSPEM 151

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              ++         +  +    Y+   K    LDF+DLI+    L ++   +     +  
Sbjct: 152 VLTRVRDERE---RVFSHFYRLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKT---RWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q++ ++L+DE QDT+  Q+E+I+ L                   VGD+ QSIYS+ GA+P
Sbjct: 206 QKVRYLLVDEYQDTNTSQYELIKLLVG----------GEANFTVVGDDDQSIYSWRGAKP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + + R +               +I+L  ++RS+  IL   + +    ++       S  +
Sbjct: 256 ENMQRLREDF---------DLKVIKLEQNYRSSQRILHCANILIDNNDHIFQKRLFSNLS 306

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              + +                                   + +  +    A RI     
Sbjct: 307 EGEKLN-----------------------------------VIEAKNEEHEAERIV---- 327

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                  + ++      + KD  +L R    + L+      L    +I    +       
Sbjct: 328 -----GELIAHRFSNKTKYKDYAILYRGNHQSRLLEK----LLMQNRIPYKISGGTSFFA 378

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY---- 469
              IKD+MA  R +++Q+DD +F+ ++ +P        + K+      +  +++E     
Sbjct: 379 RAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGAVTLEKLGLLANEKQVSLFEAIFDF 438

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
             IQ+         Q   ++I E+   A+   P +    +L   +            +  
Sbjct: 439 ELIQRLTPKPYQALQDFARWIVEIADQAERSDPIEAVKDLLAKIQYEAYLYETATSPKAA 498

Query: 523 NEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 +     +        E     +L ++++ L       +       ++V++MT+H
Sbjct: 499 EMQSRNVQTLFEWVQGMLEGDEIEEPMTLVQVVNRLTLRDMLERGEDDDEADQVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+                                     
Sbjct: 559 ASKGLEFPHVFLVGMEEGILPHQTSLD--------------------------------- 585

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +   EE  RL YVG+TRA   L   +CK      E    + + + +           +
Sbjct: 586 --EDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKPEPSRFLLELPQDDLVWESE 643

Query: 697 KIKLTNSINKDEWIA 711
           K K+T     ++  A
Sbjct: 644 KPKMTEEQKVEKTSA 658


>gi|240172137|ref|ZP_04750796.1| ATP-dependent DNA helicase [Mycobacterium kansasii ATCC 12478]
          Length = 1066

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 148/1054 (14%), Positives = 299/1054 (28%), Gaps = 179/1054 (16%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L    GL                    V       + S+      +L         ++T+
Sbjct: 62   LARLAGLEPG-------AAACESAGTPVVSTYHAFAGSLLRDYGLLLPVEPDTSLLTETE 114

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK---------SQDEFIKIR 111
              +  F +++ +    +       +T  + +    L E L             +  +   
Sbjct: 115  LWQLAFEVVNGYRGELRTQKTPAAVTAMVLRLWGQLAEHLVDTGQLRDTHVELERLVHTL 174

Query: 112  DRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                  +    +   L +            L     E  +   V+DF   + +   L   
Sbjct: 175  PPGPYQRDRAPSQWLLRMLATQNERAELVPLLDALLERMRAEKVMDFGLQMASAARLAAS 234

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                  +  ++  +   +L+DE QDT   Q   + SL                L AVGD 
Sbjct: 235  FP---QVGRELRNQFRVVLLDEYQDTGHSQRVALSSLFG------GGVDDGLALTAVGDP 285

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
             QSIY + GA    + R          + G    I+EL  S+R+    L + + + +   
Sbjct: 286  IQSIYGWRGASATNLPRFTTDFP---LSDGTPAPILELRTSWRNPPRALHLANAISAEAR 342

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                    S      R+      GTV+       Q +                       
Sbjct: 343  RR------SVAVRALRARPDAPPGTVRCALLPDVQAE----------------------- 373

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                      I++ +    + +      +      VLVR+  D   I    R       I
Sbjct: 374  -------RDWIADHLQRRYLRARAD--GVGPPTAAVLVRRNADAAPIADALRA----RGI 420

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-- 460
             V       L     + D++A+ R +       + + +L  P +     D+  +  +   
Sbjct: 421  PVEVVGLAGLLSIPEVADVVAMLRLVAEPTAGTAAMQVLTGPRWRLGGRDLAALWRRALG 480

Query: 461  --------------------HETETVYEYIQK------FANCGISKFQHVIKYIHELIHI 494
                                 +T  + + +        ++  G  +   +   +  L   
Sbjct: 481  LAGGPNESSPESIAAAAGPDSDTPCLADALSDPGPADCYSAAGYRRIVALAGELKLLRAQ 540

Query: 495  AQFCSPHDFFT--LILGAK-KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY------- 544
               C P        +LG   + R +  +       + LD F +   +  + +        
Sbjct: 541  LGHCLPDLVAEVRRVLGVDCEARAKSAATAEWSGTEHLDAFSDVVAKYAERATSSCTEVP 600

Query: 545  --SSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              +S+  L++ L+              +   + V+++TVH AKGLE  VV +      VF
Sbjct: 601  AKASVAGLLAYLDVAAEVENGLPPAQPAVARDRVQVLTVHAAKGLEWQVVAVAHLSGGVF 660

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWI----------------PQSKSRNNIVSDLIKHLKKS 642
                 +   +       P +                       K  ++ +S+  + L + 
Sbjct: 661  PSTASRSTWLTDPGELPPLLRGDRVSTGVLGIPVLDTSAVTNRKQLSDKISEHRRQLDQR 720

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT------------------WYDM 684
              +E  RLLYVG+TRA D L++  H   +   K    +                     +
Sbjct: 721  RVDEERRLLYVGVTRAEDTLLVSGHQWGATGVKPCGPSEFLCEVKDIIDHSVAAGDPCGI 780

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD-----EQKI 739
            V          ++  L ++  +  W A        +     R        +         
Sbjct: 781  VDQWAPAPAEGERNPLRDNAIQAVWPAEPLGARRADVERGARLVAEATAAEVIDAGVADT 840

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLES--LLSDNQTFNRGLIIHKLLQVIFTLP 797
               +             + P   +  G+ ++     L  +    R  + H+L       P
Sbjct: 841  EGWVQDVDALLAERARAVQPPARELPGQLSVSGLVELGRDPAKARQRLAHRLPSR--PDP 898

Query: 798  EHKRKNFITSYCTKNAK---LWPAKEYKNLLL-SITRLLENPMMTTAMSCD---SYSEVS 850
            +    N   S+  +      L+   +        ++   E   +  A +     + + ++
Sbjct: 899  QALLGNAFHSWVQRFYGAELLFDLGDLPGAADPEVSNAEELAKLRAAFTASPWAARTPIA 958

Query: 851  VSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
            V      P  D ++ GRID +       + + ++KT                 QL++Y  
Sbjct: 959  VEVPFEMPVGDTVVRGRIDAVFADPDGGVTVVDWKTGEPPRGPEGRRQAA--VQLAVYRL 1016

Query: 910  ILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLN 941
                       S+     YV    + ++P    +
Sbjct: 1017 AWAALLGCSESSVRTAFYYVRSG-ITVVPDELPD 1049


>gi|149910342|ref|ZP_01898985.1| putative ATP-dependent DNA helicase Rep [Moritella sp. PE36]
 gi|149806590|gb|EDM66558.1| putative ATP-dependent DNA helicase Rep [Moritella sp. PE36]
          Length = 671

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/673 (15%), Positives = 220/673 (32%), Gaps = 135/673 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           ++QA      +++ +LL                TQ+  ++  +L ++L+ +   +     
Sbjct: 101 IKQAFTLFDDQDQLALLKEL-------------TQDTLEEDKELIDQLRSAISNWKNELV 147

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                 + ++ +    L       Y    K    LDF+DLI+    LL+  +    +R +
Sbjct: 148 -LPPQAIARAQMPQDKLFAQCYDDYLRHMKAYNALDFDDLIMMPTLLLRLNEE---VRER 203

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
              +I ++L+DE QDT+  Q+E+++ +                   VGD+ QSIYS+ GA
Sbjct: 204 WQNKIRYLLVDEYQDTNTSQYELVKLIVGQ----------SAKFTVVGDDDQSIYSWRGA 253

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P+ +   ++              +++L  ++RST  IL   + +     +       S 
Sbjct: 254 RPENLTLLQKDFP--------GLKVVKLEQNYRSTQRILKAANILIDNNPHEFNKRLFSE 305

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                        G  +  +   ++++                          A ++   
Sbjct: 306 L------------GYGEPIKVFTTKNE-----------------------EHEAEKVVSE 330

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                    + ++        KD  +L R    + L            +I    +     
Sbjct: 331 ---------LLAHKFMARSDYKDYAILYRGNHQSRLFEKAL----MTNRIPYKISGGTSF 377

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
                IKD+MA  R +++ +DD +F+ ++  P        + K+         +++    
Sbjct: 378 FSRAEIKDMMAYLRLLVNPDDDNAFLRVVNVPRREIGPTTLEKLGNYANMRNISLFAASF 437

Query: 472 KFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SR 520
           +           +   +   +++ EL    Q     D    ++               ++
Sbjct: 438 EMGLEQTLTGRGLLAVRGFTRWLVELADQEQRSDSIDAVRDMVRDIHYEDWLYETSTSAK 497

Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                +  + E   +        + +   +L ++++ L       +     + ++V++MT
Sbjct: 498 AAEMRMKNVSELYRWVTEMLKGDDLDEEMTLAQVVTRLTLRDMLERNEEEDDSDQVQLMT 557

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            H +KGLE P VF+V     +  H+                                   
Sbjct: 558 YHASKGLEYPYVFMVGMEEGILPHQSSIDDDP---------------------------- 589

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                   EE  RL YVG+TRA   L   +CK      E    + + + +       +  
Sbjct: 590 ------NVEEERRLAYVGITRAQKVLFMMLCKERRQFGEVVKPEPSRFLLELPQDDLEWD 643

Query: 695 VKKIKLTNSINKD 707
           ++K   +    + 
Sbjct: 644 LRKKPDSPVEKQA 656


>gi|294673714|ref|YP_003574330.1| putative ATP-dependent DNA helicase PcrA [Prevotella ruminicola 23]
 gi|294472187|gb|ADE81576.1| putative ATP-dependent DNA helicase PcrA [Prevotella ruminicola 23]
          Length = 809

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/713 (14%), Positives = 208/713 (29%), Gaps = 98/713 (13%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            + +++  +++  +  +    +                +   Y E  ++   +DF+DL++
Sbjct: 140 SVADRISLAKNHLLLPQAYQQSAWAADDATQKRPQVANIYIRYAERCRQANAMDFDDLLV 199

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            T  L +K +    +R K  ++   +L+DE QDT+  Q  ++  LT++           +
Sbjct: 200 QTWVLFEKNEE---VRQKYVEKFGFVLVDEYQDTNYAQQSIVYQLTKE----------RQ 246

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIYSF GA    +L  +               + +L  ++RST  I+   
Sbjct: 247 KVCVVGDDAQSIYSFRGANIDNILNFQSQYNN--------AKLFKLEQNYRSTQLIVQAA 298

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +    E            I        + G     +   S  +               
Sbjct: 299 NSLIRRNE----------RQIPKNVFSKNEHGEKLQLKPAYSDRE--------------- 333

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                      A  +   I  +   D              D  +L R    +       R
Sbjct: 334 ----------EALIVTQDIKKLKRQD---------NCNWSDFAILYRTNSQSRSFEEQMR 374

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  I               IKD++A  R I + +D+ +F  ++  P     +  + 
Sbjct: 375 ----KDGIPYRIYGGLSFYQRKEIKDVIAYFRLIANPDDEEAFKRIINYPARGIGDTTVG 430

Query: 455 KICT-QRHETETVYE-------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
           KI    +    +++        +    +   ++K Q+  + I   I   Q    +     
Sbjct: 431 KIIQTAQAYGVSLWRVIKDPVLFPMDVSKGTMTKIQNFRQLIEGWIERLQTEDAYTLGHD 490

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-------LQELISELEQ 556
           I+      +   S    E     + L+EFL       ++           L + + E+  
Sbjct: 491 IIMNSGISKDIYSGRNPEDISRQENLEEFLGGIQDFVESRREEDMGDEVYLPDFLQEVAL 550

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                     +N ++V +MTVH AKGLE P VF+V     +F                  
Sbjct: 551 LTDLDSDDGDSN-DKVVLMTVHAAKGLEFPTVFVVGLEENIFPSPMCTNSMRELEEERRL 609

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS--NEK 674
                    K      +       +   +  +R  ++         +  +          
Sbjct: 610 LYVAITRAEKHCILTCAQNRFRYGRMEYDTPSR--FIRDIDPELLQVHSEAGGAGSFGAP 667

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           +      YD             +     S   +            +  P  R    +Q  
Sbjct: 668 QRKAYNRYDGGAYGTGTTGGYSRSSRYESEGPEWMQNPRPVATQFKADPKPRAVAPRQPE 727

Query: 735 DEQ-KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
                               P   +PS  D +    +E     +  F  G ++
Sbjct: 728 KPVNPFGANFKRVYNAVAPRPMASDPSASDLREGARIE-----HMRFGVGTVV 775


>gi|315633354|ref|ZP_07888645.1| ATP-dependent helicase PcrA [Aggregatibacter segnis ATCC 33393]
 gi|315477854|gb|EFU68595.1| ATP-dependent helicase PcrA [Aggregatibacter segnis ATCC 33393]
          Length = 673

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 110/644 (17%), Positives = 216/644 (33%), Gaps = 125/644 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ ++  DL +  + +  +    +        + +          +    Y +  
Sbjct: 120 KELTADLLQEDKDLLRTLINRISNWKNDLCSPQQALTLARDKQE--QTFAHCYDRYNKQL 177

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+    A +R K  ++I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 178 RSYNALDFDDLIMLPTLLFKQN---AEVRSKWQEKIRYLLVDEYQDTNTSQYELIKLLVG 234

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +               +I+L 
Sbjct: 235 D----------RARFTVVGDDDQSIYSWRGARPQNMVRLRDDFPA--------LQVIKLE 276

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + +    ++       S      +                       
Sbjct: 277 QNYRSSQRILHCANILIDNNDHVFDKKLFSNLGEGEKL---------------------- 314

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                         + +  +    A R+            + ++        +D  +L R
Sbjct: 315 -------------QIIEAKNEEHEAERVV---------GELIAHRFIAKTHYRDYAILYR 352

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 353 GNHQSRLLEKIL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 408

Query: 442 KSPLFNFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
            +P        + K+ +   E           +E IQ+         Q   ++I EL   
Sbjct: 409 NTPKREIGTATLEKLGSLAQEKHVSLFEAIFDFELIQRVTPKAYDALQKFARWIVELNDE 468

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L +    +       +          L    ++        E N   
Sbjct: 469 IQRSEPERALRSMLASLHYEEYLYEYATSPKAAEMQSKNLATLFDWVADMLKGDEFNEPM 528

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L ++++ L       +     + ++V++MT+H +KGLE P VFL+     +  H+    
Sbjct: 529 NLNQIVTRLTLRDMLERGEEEDDSDQVQLMTLHASKGLEFPHVFLIGMEEGILPHQTSID 588

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   EE  RL YVG+TRA   L   
Sbjct: 589 -----------------------------------EDNVEEERRLAYVGITRAQQNLWFS 613

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           +CK      E    + + + +            K  L+    + 
Sbjct: 614 LCKERRQFGELIRPEPSRFLLELPENDLQWERDKPPLSAEQQQA 657


>gi|258545647|ref|ZP_05705881.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
 gi|258519114|gb|EEV87973.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
          Length = 723

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 96/643 (14%), Positives = 206/643 (32%), Gaps = 118/643 (18%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
           +    ++     +    T     LA +     YE+  ++   +DF +L++ T +L     
Sbjct: 145 QINAYKEEGLRAEDVPPTPHPGELAIREFYHDYEKLCRQQGTMDFAELLLLTVELFTHHP 204

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     Q    +L+DE QDT+ +Q+ +++ L                LF VGD+ Q
Sbjct: 205 E---VLQNYQQRFQSVLVDEFQDTNALQYRLVQQLCA----------GGAQLFVVGDDDQ 251

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY + GA  + +L+ +R             + + L  ++RST  IL   + V +   N 
Sbjct: 252 SIYGWRGARVENILQLERDFPA--------LATVRLEQNYRSTQTILDAANAVIAQNSNR 303

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
            G +  S            +   V+++  +    +                         
Sbjct: 304 LGKTLWSDG---------QRGAAVRIYPAINEMDE------------------------- 329

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR +   I                  +  +  +L R    + +   +       +++  
Sbjct: 330 -ARYVCEHIQRWHADGG----------RYDESAILYRSNAQSRVFEEML----LQHRLPY 374

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHET 463
                    +   IKD +A  R    ++DD +   ++ +P     +  +  +    +   
Sbjct: 375 RVYGGLRFFERAEIKDALAYLRLARYRDDDGAVERIINTPTRGIGQKTLADLRQLAQQAG 434

Query: 464 ETVY-------EYIQKFANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQ 515
             ++       +  + F+    +  +  +  I ++   +A   S       ++       
Sbjct: 435 VPLWRILSDDAQIARHFSGRARNALREFVILIEQIAAKLAAEPSLKKALETVVHDTGLYA 494

Query: 516 QFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNE 571
              S    +     + LDE +N     + ++      ++  L +              + 
Sbjct: 495 ALESEGSEQADARRENLDELINAGSYIDLSTDPDSDRIMDFLVDAALDAGDGQAEEGSDS 554

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H+AKGLE P V++V     +F                                 
Sbjct: 555 VQLMTLHSAKGLEFPNVYIVGMEEGLFP-------------------------------- 582

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL YVGMTRA  +L +C       + + N       +++    
Sbjct: 583 --TQRAIESPDKLEEERRLAYVGMTRAERELTLCFAERRRFQGQENYPQPSRFIHEIPEE 640

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                +  + + I+K   +            P +  ++++   
Sbjct: 641 LTEAVRPMVYSGISKMRRMDSASPRTASPAAPYKLGDSVRHPK 683


>gi|167752257|ref|ZP_02424384.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM 17216]
 gi|167660498|gb|EDS04628.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM 17216]
          Length = 813

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/657 (15%), Positives = 207/657 (31%), Gaps = 133/657 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y    K+N  +DF+DL++ TN LL+       +  +  ++  +IL+DE QDT+  Q
Sbjct: 179 IYNIYCARCKRNGAMDFDDLLLQTNILLRD---CPDVTARYQEQFKYILVDEYQDTNYAQ 235

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +IR L++              +  VGD+ QSIYSF GA+ + +L  K+          
Sbjct: 236 YVIIRRLSQL----------HSKVCVVGDDAQSIYSFRGAKIENILSFKKDFPN------ 279

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               I +L  ++RST  I+   + V             S                     
Sbjct: 280 --AMIFKLEQNYRSTRTIVEAANSVIERNSKRMEKKCFS--------------------- 316

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                 +     +     +Y D           A  +   + + +              +
Sbjct: 317 ------EGDMGEKIRVLRAYTDREE--------AEMVVSDLRDKVRAAGD---------E 353

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +  +L R    +  +    R       I           DH  IKDL+A  R +++  
Sbjct: 354 WAEAAILYRTNNQSQALEDALR----RKGIPYRIYKGNSFYDHKEIKDLLAYIRLVINPR 409

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGIS---------KFQ 482
           DD +F  ++  P     +  + +I    +    +++E +       ++         K  
Sbjct: 410 DDEAFKRIVNYPARGIGDTTVERIALLAKARNLSMWEAVDALTAEPVTDPVQKTIVRKVA 469

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
             +  +  L         +D    I         + +    E    +D ++E LN     
Sbjct: 470 EFVALVRGLSLARAEKGLYDLGLEIATRSGIIGAYRAENTPEATSALDNIEELLNSMQLF 529

Query: 540 EQNSYSSLQE----------LISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +   + ++           +   L+       + +    + N+V +MTVH+AKGLE   
Sbjct: 530 NEQREAEIRAGERQQEERATIEEWLQGVMLMTDMDKDDPQDRNKVTLMTVHSAKGLEYKF 589

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V++V     +F  +   +                                       EE 
Sbjct: 590 VYIVGLEENLFPSQRAVESPDGF----------------------------------EEE 615

Query: 648 NRLLYVGMTRASDQLIICKHS---NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            RL YV +TRA +   +          N + S    +   +   +   + +++ +     
Sbjct: 616 RRLFYVALTRAKELATLSYAEMRFKWGNMEFSRPSCFLREIDSRYLETDAMQEEREPVRR 675

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQ--LMDEQKIPKKLFSPIKNDINEPYILNP 759
           +                     ++           +      + +K++   P ++ P
Sbjct: 676 SAGRGEGSSALDELRRRFDYRYQQKPAAGGSQAGARFGGGSSAGVKSEAQRPVVVQP 732


>gi|153836760|ref|ZP_01989427.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ3810]
 gi|149749906|gb|EDM60651.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ3810]
          Length = 1227

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 158/1021 (15%), Positives = 318/1021 (31%), Gaps = 167/1021 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMET-------GNPTIL-----KKAQTLQQASQT 59
            +     + LW  P   +SDI+ Y++ +  +       G+   L     KK   L+ A   
Sbjct: 196  TLAGEIRQLWSSPSALLSDISNYLTGAPLSLSVPAMKGSLADLHTENLKKIDELK-AQWR 254

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------ 105
            +  ++ F+L+S   + ++   +K++ T                D  +KL+K         
Sbjct: 255  ESQDDFFTLISDSDINKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEK 314

Query: 106  ---------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                        +  + F    +           ++       AK +   L F+DL+   
Sbjct: 315  TPKGSAPQHAVFEAIETFLANPISLKAPLLAHAIEHCRVMLANAKNQKQWLSFDDLLTQ- 373

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                   D S  +  +I       +IDE QDT  +Q+ +   +          ++    L
Sbjct: 374  LSASIDTDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIY--------LNNPECGL 425

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++
Sbjct: 426  FMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVQAVNQ 475

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS- 335
            VF++P++      D    I     +       ++W         Q  P    W    D  
Sbjct: 476  VFALPDSPFIYDSD----IPFLPVKYSPNAEKRIWTM-----GGQKQPALTYWLQEADDK 526

Query: 336  -LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
             LP+    + +A   A  I  ++     G   + +  K++ +QA DI VLVR   +  +I
Sbjct: 527  PLPKGEYLTRMAEATASQIQTILTQAQQGQACLVNGEKQKAVQAGDIAVLVRTGSEGRMI 586

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                + L +    SV  ++R  +      +DL  L + +L+ E+D +    L S LF   
Sbjct: 587  K---QALADQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALD 643

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               +  +           E + + A     +++ +      L  +    S       +L 
Sbjct: 644  AASLDALNND--------EIVWENAVNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLE 695

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKR 563
                 Q          +  + E L        + +  L+ L   +              +
Sbjct: 696  EGASSQSENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAENGLGGSDDQIQ 755

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               +  N V+I+T+H +KGLE  +VFL                      ++         
Sbjct: 756  RLESERNLVQIVTIHKSKGLEYDLVFLPFV-------------FSYREASEAKYYDAAND 802

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ----- 678
            ++          +K   K    E  RL+YV +TRA     I      +            
Sbjct: 803  RTVLDITGNDASMKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGVHR 862

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                 ++ +            LT   ++ + +         E+  +  +E I+ L  ++ 
Sbjct: 863  SAIGYLIQNGQEGGINDLHQGLTKQQDELDCVVVADPPQQLEDKYVAPQEEIQDLSAKEL 922

Query: 739  IPKKLFSP-------------IKNDINEPYIL-------NPSTIDTKGKTNLESLLSDNQ 778
                  +                 + +    +       +    +        S+ +  +
Sbjct: 923  QNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEADLVEPERSIFTFPR 982

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPM- 836
                G  +H L + I        +           ++    +    L   I  +L  P+ 
Sbjct: 983  GARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDTVLATPLD 1042

Query: 837  -----MTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISG 866
                 +          E+     I       +                         + G
Sbjct: 1043 GKSLLLNQKAPSQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGMLKG 1102

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKDSYPN 917
             ID +   Q   ++ ++K++H          E +      + +  Q  IY   L     +
Sbjct: 1103 FIDLVFEHQGKYYVLDWKSNHLGDDVTHYHGEALKSAMADHRYDLQYQIYALALHRFLRS 1162

Query: 918  K 918
            +
Sbjct: 1163 R 1163


>gi|24213785|ref|NP_711266.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|45658426|ref|YP_002512.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194613|gb|AAN48284.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|45601669|gb|AAS71149.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 674

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 105/665 (15%), Positives = 212/665 (31%), Gaps = 133/665 (20%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              FLT      K  + +    +      ++K S   + +  D                +
Sbjct: 113 QEGFLTTLLIANKVELKKAKVSEILGKISRIKNSGLAYREYLDSSLVESD--------QV 164

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+++ K+   LDF+DLI+    LL++    + +R +  ++  + ++DE QDT+
Sbjct: 165 ANLVYDSYQKSLKEQNSLDFDDLILLPGILLRE---FSEVREEYHKKYQYFMVDEFQDTN 221

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+  +R+L  +           R L  VGD+ QSIY+F G++   +L  ++       
Sbjct: 222 QTQYIFLRALMGE----------NRNLCVVGDDDQSIYAFRGSDLSLILNFEKDFP---- 267

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               + +++ L  ++RST+ I+   + +     + +     S+                 
Sbjct: 268 ----EANVVRLLENYRSTSVIIQGANSLIKNNLSRRSKELFSSIP--------------- 308

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          ++  +    D   +       A  +   I   +  D         
Sbjct: 309 -------------GGRKIRYLERMDEKDE-------AAYVVDCIREEMIKDARVG----- 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 I +L R    T       R       I+      +   D   ++D+++  R I 
Sbjct: 344 ----SQISILFRTNFQTRPFEEELRS----RSIAYKLVGGYNFFDRKEVRDMISYIRLIA 395

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE----------YIQKFANCGI 478
           +  DD S + +L  P        I  I        E++YE          +I        
Sbjct: 396 NTRDDASLLRILNYPKRGIGPGSISLIHEKASQMGESLYEILFRVCESPDFIPNLQKKIQ 455

Query: 479 SKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEF 532
           S+  + +  I             +  F   +      ++ +    +E +       L E 
Sbjct: 456 SEIYNFVNLIERTKKKFSTAPKMYYAFREFIQEVGIEKEILLEEKDEKVAKARTFNLSEL 515

Query: 533 LNFTLRNEQNSY----SSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           +N     E+N       +L + I+ L                N V+++T+H +KGLE   
Sbjct: 516 VNMMSYFEENHDSPEKPTLFDFINRLNLLMEDENPSDEDKEDNRVQLLTIHQSKGLEFES 575

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V++      +  +  +                                    ++S+ +E 
Sbjct: 576 VYVPGMEEGILPNSRVLT----------------------------------EESSVDEE 601

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RLLYV MTRA   L +   +N     +         + +                   +
Sbjct: 602 RRLLYVAMTRARKHLCLTGAANRRKFGEQTATQASRFLTEIDPETMDWVSNDEVRQQETE 661

Query: 708 EWIAY 712
           ++ A 
Sbjct: 662 DFFAE 666


>gi|15829169|ref|NP_326529.1| ATP-dependent helicase PcrA [Mycoplasma pulmonis UAB CTIP]
 gi|14090113|emb|CAC13871.1| ATP-DEPENDENT HELICASE PCRA [Mycoplasma pulmonis]
          Length = 734

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 123/702 (17%), Positives = 227/702 (32%), Gaps = 140/702 (19%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           L+   G    ++  +  K  + + + +++                + ++A  +     + 
Sbjct: 20  LRIIAGAGSGKTRVITSKIAYLIEHEKIAPWKILGLTFTNKAAREMKERALKMIGPKASH 79

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                F  L +  L Q           EI  +S D K+ LK    E        + +  F
Sbjct: 80  VELSTFHSLCNVILKQDIDKIGYPKNFEIVDES-DKKQILKGIYLELAITTKDVSIWDAF 138

Query: 121 KSTLAS--------------------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
                                     L L K +   Y    KK  +LDF+DLII T +L 
Sbjct: 139 DYIAKMKKNKYFSSIEEELDNENEEDLALLKNIYKGYVSYLKKQSLLDFDDLIILTYELF 198

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
              D++   R K   + +++L+DE QDTS IQ+E+++ L  +           + +  VG
Sbjct: 199 SSSDLT---RQKWASKYDYVLVDEFQDTSFIQYEIVKVLASN-----------KNITIVG 244

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  Q+IYS+ G++ + +L   +  +            I    ++RST +IL + +K+   
Sbjct: 245 DPDQNIYSWRGSDFRIMLNFDKDFEN--------TKTINFEQNYRSTPNILEIANKLIKN 296

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +N    +  ST+                                             + 
Sbjct: 297 NKNRMEKNLFSTSARGADPLF-----------------------------------LTKY 321

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           +  + A+ I   I  +               +   I +  R  K +  +           
Sbjct: 322 NNKLEAKWIVEKIIELSQQ-----------TKYSQIAIFTRTAKYSRDLEEEL----FQN 366

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I  V        +   +KDL+A  R I +   ++SF+ ++ +P  +     + KI T  
Sbjct: 367 SIPYVIYGGTRFFEREIVKDLLAYLRLINN-SSEVSFIRVINTPRRSIGPKTLEKIITLA 425

Query: 461 HET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
            E       E +               + + K+I  ++   +          +L     +
Sbjct: 426 SEKGYEKSFEFLENLYINKNLQSFFSLKDLEKFIQAILEARESLKNDQKIAYVLEKLVEK 485

Query: 515 QQFI-------SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
             +        ++  ++V   +D+        E+ +   L  L   L +         + 
Sbjct: 486 IDYKSFCIFDRNKRKDQVDFDIDQLYESIAFWEEENPELL--LDDYLNEISLLTSGDQNE 543

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           N ++V IMT H+AKGLE   VF+     + F H                           
Sbjct: 544 NSDQVSIMTAHSAKGLEFDYVFITGLAEKHFPH--------------------------- 576

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                  L  +      EE  RL YV +TRA  QL +     
Sbjct: 577 ----FLSLKSNDYDDEIEEERRLCYVAVTRAKKQLFLTAPLT 614


>gi|258591574|emb|CBE67875.1| DNA helicase II [NC10 bacterium 'Dutch sediment']
          Length = 729

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 116/684 (16%), Positives = 220/684 (32%), Gaps = 129/684 (18%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
              A  ++ +       ++ SL+    L  +   ++++  + I  +    K +L  +++ 
Sbjct: 109 HGAALGIKSSFVIYDEGDQMSLMRDC-LRAQGLSERSLNPRAILSRISRAKNELLSAEEY 167

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            ++  DR       + T     +       Y+E       LDF+DL++ T  L ++   +
Sbjct: 168 ALQANDRME-----ERTSKLYLM-------YQERLDGLQALDFDDLLMLTVRLFEQHPEA 215

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                       +IL+DE QDT+  Q+ +I  L   +            L  VGD+ QSI
Sbjct: 216 ---LAAYQDLWRYILVDEYQDTNHAQYRLIHLLASQY----------GNLCVVGDDDQSI 262

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  +R             ++I L  ++RST  IL     V +     +G
Sbjct: 263 YRWRGADLNNILDFERD--------HASCAVIRLEQNYRSTQQILQGAGGVVAHNYGRKG 314

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                     LW                      D   +       A
Sbjct: 315 KT---------------------LW-------TENEAGDPIVLYRALDENDE-------A 339

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A TI   +  +    +            +  R    + ++    R       I    
Sbjct: 340 LFVARTIQGRVADEGTGYDAY---------AIFYRTNAQSRVLEEALRNAL----IPYAI 386

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  +   IKDL+A  R++++  D +SF  ++ +P        I K+      E  T
Sbjct: 387 VGGLRFYERKEIKDLLAYLRWVVNPADSVSFKRLVNAPARGIGPATIAKLELLAMQEKVT 446

Query: 466 VYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           ++E  Q+ A+         +  + +++ + E    +      D    ++      ++   
Sbjct: 447 IWEACQRAAHKKLFNTKQQAAMEGLLRLMEEARAQSVLTPISDLIAELITQSGYAEELEH 506

Query: 520 RFGNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               E     + L E +       E+N+   L   +  +           +     V +M
Sbjct: 507 ERTPEAESRLENLKELVTAAQEFAERNADGGLPAFLDSVALISDLDGY--AEGRGAVTLM 564

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+HTAKGLE   VF+V     +F H                                   
Sbjct: 565 TLHTAKGLEFDTVFMVGLEEGIFPH----------------------------------A 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +    +   EE  RL YVGMTRA  +L +            +       + +      +V
Sbjct: 591 LAMPDERELEEERRLCYVGMTRARQRLYLASARQRRLYGNRSFNLPSRFLDEIPAEVLQV 650

Query: 696 KKIKLTNSINKDEWIAYEWSTHHP 719
           +    + S++       E     P
Sbjct: 651 RDPWESRSMSPSPSTFPERHNDEP 674


>gi|296111905|ref|YP_003622287.1| ATP-dependent nuclease, subunit A [Leuconostoc kimchii IMSNU 11154]
 gi|295833437|gb|ADG41318.1| ATP-dependent nuclease, subunit A [Leuconostoc kimchii IMSNU 11154]
          Length = 1241

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 113/595 (18%), Positives = 210/595 (35%), Gaps = 35/595 (5%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
            Y   + T   + L +     + EAK+   ++DF DL      +L        +      
Sbjct: 342 QYDSNQLTQTLILLTQTFREAFTEAKRTAKLVDFPDLGALALQILADEATQKTV----SG 397

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           + + IL+DE QD + +Q  ++  +           S+ + ++ VGD KQSIY F  AEP 
Sbjct: 398 QFSEILVDEYQDINQLQETLLSQV-----------SNGQNMYMVGDVKQSIYGFRQAEPS 446

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
              ++ +   +         + IEL  +FRS  ++  V + +F+   + +          
Sbjct: 447 LFTQKYKRFAQ----GNNDDTRIELADNFRSQNNVTQVTNLIFTQLMDEKLGDIAYLGEA 502

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
           +    +      V     V     +     Q+      D    E   +  AR +A  I  
Sbjct: 503 KLVP-KAAYPVDVPAVFDVDVITTTSSESHQDETAQMADEPTFEKRQAQYAR-LADKILK 560

Query: 356 MIGT---DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +  T   D        R ++  DI +L R +     +    R       I V  +     
Sbjct: 561 LRQTTIFDRKNDPAGMRPVEYADIAILTRSKAGYIDLVAALR----QAGIPVQVDSVGNY 616

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
              + I  ++ + R + +   D+  V +L+SP+FN +E+D+  I     + +      + 
Sbjct: 617 FQTMEIYLMLDVLRVVDNPHQDVPLVAVLRSPMFNLTENDLAAIRLTDQKHDFWTALKEF 676

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDE 531
             +    K   ++    +   +A           I               G +    L  
Sbjct: 677 SKSDAQGKV--ILDLFQKWHLLAIQNDLVTLIWTIFDDTAWLDYVAGMPGGAQRQANLHA 734

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPV 587
             ++    + N+ + L   +  +EQ      +       A+   VRIMT+H +KGLE P+
Sbjct: 735 LYDYARTYQTNNNAGLFRFVRYIEQLQDNDGQLGEAPQEADVQAVRIMTIHASKGLEFPI 794

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFL +      +      + I                          + + LK+ +  E 
Sbjct: 795 VFLPEFDKDFNTKDLTGNVLIQKDAGIGMDYMQPDALVSMSTLQKLTVQQALKRQSWSEE 854

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            RLLYV +TRA  QL I       ++ KS + T    +          + ++L+ 
Sbjct: 855 MRLLYVALTRAEQQLHIIGSVKVDDDGKSTRLTELWQLAKKTSGQFLAEDLRLSA 909


>gi|256821245|ref|YP_003145208.1| ATP-dependent DNA helicase Rep [Kangiella koreensis DSM 16069]
 gi|256794784|gb|ACV25440.1| ATP-dependent DNA helicase Rep [Kangiella koreensis DSM 16069]
          Length = 674

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 102/664 (15%), Positives = 205/664 (30%), Gaps = 127/664 (19%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           F    S  L +    ++    +++  +   L++++   ++E I     +N  K  +    
Sbjct: 111 FDDQDSLALIKDLGFKEAESDKQLLFR---LQQQISAWKNELILPEQAYNQAKDQEQL-- 165

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   +   Y  + K    +DF+DLI+    LL+       +R K   +I ++L+DE 
Sbjct: 166 ---IFAKVYEKYARSMKAYNAVDFDDLILIPTLLLRDDPE---VREKWQNKIRYLLVDEY 219

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+I+ L   F               VGD+ QSIYS+ GA P+ + +  +   
Sbjct: 220 QDTNTSQYELIKHLVGQFGH----------FTVVGDDDQSIYSWRGARPENLDQLAKDYP 269

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      +I+L  ++RS   IL   + +     +A      S           G  
Sbjct: 270 H--------LQVIKLEQNYRSYGRILKAANVLIDNNPHAFVKKLWSDKPY-------GDP 314

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
             V                                +    A ++   I        I   
Sbjct: 315 LRVVTCP----------------------------NEDAEAEKVVTEI--------ISRK 338

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            + +  +  D  +L R    + +             +    +          IKD+MA  
Sbjct: 339 VRTKNGRYSDFAILYRGNHQSKIFERTLIA----NNVPYKISGSTSFFARSEIKDIMAYL 394

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------ 478
           R + + +DD +F+ +  +P        + ++    +    +++    +            
Sbjct: 395 RLLTNPDDDNAFLRIANTPRRGIGPTTLEQLGTYAQIRHISLFAACHEIGLEQHLQGKGL 454

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFL 533
              +     +      A+          ++                +      + + E L
Sbjct: 455 DNVRRFSDLVSRAADNAERGDSVGVIHDLVARIGYHSWLHETSSTPKAAEFRWNNIQELL 514

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRA----HSANHNEVRIMTVHTAKGLESPVVF 589
            +  +   ++ +      + +                   NEV++MT+H AKGLE   V+
Sbjct: 515 GWVEKGIDDNSNDPNPFAAAVANLMLRDMLDRNEKEEEESNEVQLMTLHAAKGLEFNHVY 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           LV    +   HK                                     ++    EE  R
Sbjct: 575 LVGMEEEFLPHKSS-----------------------------------IENDDIEEERR 599

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA   L        S   +         + +   +D      +   +  + E 
Sbjct: 600 LAYVGITRAQRTLTFTLCKKRSKYGEVMTCEPSRFLEELPQDDLDWDAKRKPLTEEEQEQ 659

Query: 710 IAYE 713
           +A +
Sbjct: 660 LATD 663


>gi|221194693|ref|ZP_03567750.1| UvrD/REP helicase [Atopobium rimae ATCC 49626]
 gi|221185597|gb|EEE17987.1| UvrD/REP helicase [Atopobium rimae ATCC 49626]
          Length = 1169

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 145/996 (14%), Positives = 304/996 (30%), Gaps = 130/996 (13%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
               +  + +   IY++L  L +     +     +  ET    I ++ + +         +
Sbjct: 203  ELAIEKDGAVPDIYQELKRLHFQMRELLMHVAEIDDETAVNIITRQEEKVAAYLANHTKQ 262

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            +      +    +         T+++              Q +   ++       + +  
Sbjct: 263  DVQPSEIADLFEKIPRLHCGKETKKLAA----------DIQSDCEDLQKTCRMLDINRYA 312

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               + + K++   + E K++   LD  DL+       +       +  +   +   +++D
Sbjct: 313  PQLIKVTKFVVERFSEKKREARGLDNNDLLHEVARAFEDHPE---LAGEYSSKFKLVMVD 369

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT+  Q  +I+ L  +           R L  VGD +QSIY F  A+ +     ++ 
Sbjct: 370  EFQDTNEQQVRMIKRLAGE---------DARFLTTVGDAQQSIYGFREADVEVFFERQKE 420

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              +         +   L  +FRS  DIL  V  V        G        +  ++SR  
Sbjct: 421  IPEE--------NRPLLIDNFRSHDDILRFVKAV-------CGAEGMIPDFMDLKASRRE 465

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G +Q     V    +    +     +  D         + A ++A  I+ +I      
Sbjct: 466  SSGPLQNNIPRVMVELTAVEKKGNKRAAKADV-----YQRVAAEQLADRIARIISEGV-- 518

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                    QAKDI +L+   KD  L     R       I  V +          ++ + A
Sbjct: 519  -------FQAKDIAILMTSVKDASLYIEALR----QRGIESVLSGGTGFGQLPEVQTIAA 567

Query: 424  LGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQ----------RHETETVYEYIQK 472
            L   +    D       +L S +F+    D   + T           R     +      
Sbjct: 568  LLSALADIHDTEQGLFPVLTSGMFSLEASDFVLLSTDLTKREGFVFKRPIEGGLLTQEFS 627

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLD 530
              +    + +  +  +++                ++ A    ++  +    E      + 
Sbjct: 628  GDHQPSCRLKRALTILNQAKRDIAVKDVATVIQQVIKASGWIERLETGDAQERSQAANIL 687

Query: 531  EFLNFTLRNEQNSYSSLQ----ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
              +      E++               L+         +    + V+I T+H +KG E  
Sbjct: 688  AAIRRVRELERDLGVGPSQLSVAFKHWLKVTKAAPVVLNDERQDAVKIQTIHASKGKEYK 747

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK------ 640
            VV +V     +       K  ++  ++    + +  P+++ R + + + I   K      
Sbjct: 748  VVAVVGALKDLDQRAPSTKRCLIGRVDAKRIVALKPPRTELRGDKIPEDISQCKTICDWR 807

Query: 641  --------KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                     + Q E  RLLYVG+TRA + +I+   +        + +    ++      D
Sbjct: 808  LYLDETQNAAAQAEAIRLLYVGLTRAREMVILTATAIQQKAAGFSPKLTKAVISSILKED 867

Query: 693  ERVKKIKLTNSI----------------NKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
               +  +                      + +  A +        T  + +E    L  +
Sbjct: 868  SLPRAGESPFEYGGSQAGVCRTLYVRFSEQADGYALDGVDLDQTRTMSDAQENQAGLTFD 927

Query: 737  QKIPKKLFSPIKNDINEPYILNPST------------------IDTKGKTNLESLLSDNQ 778
               P+      K + N     + S+                  +  K  +       +  
Sbjct: 928  LYAPETSVPQAKKETNYQEFYSYSSLHQQINDKFQEVSEQQETLQGKEASQDGGAEGETS 987

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
              + G   H+L Q +     +  ++ I     +N            L S   L  N  + 
Sbjct: 988  ATSFGSTFHELAQYMVEADAYPERSTIERIAIQNHVQKSLMSR---LESALTLWNNSDVR 1044

Query: 839  TAMS--CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ--QNIFIFEYKTHHHVPQEIE 894
                      +E+    +         ++G ID ++ +      F+ +YKT        E
Sbjct: 1045 AEARKYACVCAEMPFCLE-QVYGDKKYLNGAIDLLATNPKSTEAFVVDYKTG-DKNLTPE 1102

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
             I  +H  Q + Y  +L      K + C  + V  P
Sbjct: 1103 EIIESHRMQANFYAFVLMQRGYTK-VTCAFVCVEVP 1137


>gi|217976782|ref|YP_002360929.1| UvrD/REP helicase [Methylocella silvestris BL2]
 gi|217502158|gb|ACK49567.1| UvrD/REP helicase [Methylocella silvestris BL2]
          Length = 790

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 99/592 (16%), Positives = 175/592 (29%), Gaps = 117/592 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL---AKYLNAHYEEAKKKNCV 146
            +   D +   +    +    ++R        +  A+         L A Y+E  K    
Sbjct: 157 AEDIDDKRWPARSLAYQIDAWKNRGLDPAHVPAGEAAAFANGKGGRLYALYQERLKILNA 216

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            DF DL++ T  L K+      +  +      ++L+DE QDT+ +Q+  +R L +     
Sbjct: 217 ADFGDLLLETLRLFKENPD---VLKQYQDRFKYMLVDEYQDTNTVQYLWLRLLAQ----- 268

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    +  VGD+ QSIY + GAE   +LR +               +I L  ++RS
Sbjct: 269 -----GRHNVCCVGDDDQSIYGWRGAEVDNILRFESDFP--------GAKVIRLERNYRS 315

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  IL V   + +  +   G +  +                  +W+              
Sbjct: 316 TGHILAVAAGLIAHNQGRLGKTLFTDDEAGL------MPTVTGVWDS------------- 356

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              AR I   I  +                  ++ +LVR     
Sbjct: 357 ----------------EEEARGIGEEIEQLARKGHA----------YDEVAILVRASFQM 390

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                    L     +           +   I+D +A  R +    DDL+F  +  +P  
Sbjct: 391 REFEERFITL----GLPYRVIGGPRFYERAEIRDALAYLRCVAQPADDLAFERIYNTPRR 446

Query: 447 NFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCS 499
              E  + ++    R +   + E  +      +         + ++        +     
Sbjct: 447 GLGESTLQQLHEYGRLQRVPLIEAARFMIETDEIKPKQRQALRDLLANFSRWASLIGEKP 506

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             +   +IL        +      E    L+         E   +  L   +  +     
Sbjct: 507 HGELTEMILEESGYTDMWRKDRTAEAAGRLENLKELVRAME--EFPDLAAFLEHISLVME 564

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              +        V IMT+H AKGLE   VFL      +F H+                  
Sbjct: 565 AETKDA---GPRVSIMTLHAAKGLEFETVFLPGWEEGLFPHQRSLD-------------- 607

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                ++  EE  RL YVG+TRA  +  I   +N  
Sbjct: 608 ------------------ESGRAGLEEERRLAYVGITRARRRAKIYFATNRR 641


>gi|260599161|ref|YP_003211732.1| exonuclease V subunit beta [Cronobacter turicensis z3032]
 gi|260218338|emb|CBA33351.1| Exodeoxyribonuclease V beta chain [Cronobacter turicensis z3032]
          Length = 1180

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 131/969 (13%), Positives = 289/969 (29%), Gaps = 129/969 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINK-YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
            +E+ E  Y++         +   +    L+    N  + K++ + +           ++ 
Sbjct: 216  DETIESRYENAIARIDEVKAQWRENAADLAALIQNSGVDKRSYSSRYLPAWLDQVAAWAQ 275

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
              +         +K   +  + K            +       D           L    
Sbjct: 276  EETTSWQLPSALEKFAQSTLLEKTKKG-----DAPRHAVFDAIDALLAEPFTIRDLLIAR 330

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
                +     + K++   L F+D++   ++ L +      +   I       +IDE QDT
Sbjct: 331  AMAEIRYTVAQEKRRRGELGFDDMLSRLDEALNQPG-GEALATAIRARYPAAMIDEFQDT 389

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
               Q+ + R +               TL  +GD KQ+IY+F GA+    +R +       
Sbjct: 390  DPQQYRIFRRIWLG--------QHETTLLLIGDPKQAIYAFRGADIFTYMRAR------- 434

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               G+  +   L  ++RS   ++  V+++FS  +NA    +     ++  +         
Sbjct: 435  ---GEVNAHYTLDTNWRSAPGMVESVNRMFSQMDNAFMFRDIPFLAVKPAARNQS----- 486

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IF 363
                 +      +  P    W    D          +AR  A  I + +         ++
Sbjct: 487  -----LRFTFAGKTQPAMTLWLMEGDGAGVSDYQQTMARVCAGQIRDWLSAGMKGEALLW 541

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
               + R +QA DI VLVR R +  L+      L      SV  ++R  +       +++ 
Sbjct: 542  REDRARPVQASDITVLVRNRIEANLVREALNALNIP---SVYLSNRDSVFATQEALEMLW 598

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            L + +L+ E +      L + +       I  +    +  + + E    +    +   + 
Sbjct: 599  LLQAVLAPEVETRLRSALAASMLGLDAPAIEALNENENAWDALVEEFDGYRQIWLR--RG 656

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
            V+  +  L       +       +L    G ++            L E L        + 
Sbjct: 657  VMPMLRAL------MTHRQVAENLLATPGGERRLTDIL------HLSELLQEASAQADSE 704

Query: 544  Y---SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            Y     L + I+E +    + +    ++ + V+++T+H +KGLE P+V+L          
Sbjct: 705  YALVRWLAQHIAEPDASASSQQLRLESDKHLVQVVTIHKSKGLEYPLVWLPFIADF---- 760

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            +  ++          P             +   + ++  +     E  RLLYV +TR+  
Sbjct: 761  REQRQAFYHDRETFAP---------MLDLSNAEESLELAEMERLAEDLRLLYVALTRSIW 811

Query: 661  Q--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK-----------IKLTNSINKD 707
               L +         K+         +       E +              +        
Sbjct: 812  HCSLGVAPLFRRRGAKEGETDLHRSALGRLIQKGEALDANGLRRCIEALCDEHLALAIPG 871

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-----SPIKNDINEPYILNPSTI 762
            E     W         L   E  ++++DE ++          +    D+     L+ +  
Sbjct: 872  EPDNTPWMAPESAPPMLAARELQRRIVDEWRVTSYSGLQQHGAARALDLLPKLDLDGAGA 931

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                   + S  +  +  + G  +H L + +        +                    
Sbjct: 932  RDVPDEPVMSPHTFPRGASPGTFLHSLFETLDFTQPVSPEWMSQQLQLGGFDDAWQPVLS 991

Query: 823  NLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCPKKD------------------ 861
              +  +  +  N     +    + D   E+     I+   +                   
Sbjct: 992  RWIDDVLSVPLNETGVSLNQLGARDKQVELEFYVPIDAALRPDALDALIREHDPLSAQCP 1051

Query: 862  --------IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQL 904
                     ++ G ID +   Q   ++ +YK++        +             +  Q 
Sbjct: 1052 PLDFRQVRGMLKGFIDLVFRWQGRYYLLDYKSNWLGDSPQAYTFEAMSQAMQTHRYDLQY 1111

Query: 905  SIYEKILKD 913
             +Y   L  
Sbjct: 1112 QLYTLALHR 1120


>gi|259506514|ref|ZP_05749416.1| probable dna helicase II protein [Corynebacterium efficiens YS-314]
 gi|259165934|gb|EEW50488.1| probable dna helicase II protein [Corynebacterium efficiens YS-314]
          Length = 1067

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 134/1030 (13%), Positives = 270/1030 (26%), Gaps = 159/1030 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +          L       +    S  + T         Q +          +  + ++ 
Sbjct: 104  TVSTYDSYAGSLLREYGLLLPVEPSARLITQTELYHIARQVVDNYRGELTATQSPATVTE 163

Query: 72   FFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            + L        +++T + I ++S       ++      K          ++ T  +    
Sbjct: 164  YLLDLVSEMDNHMVTPDEIREESQPFINLFEELPTHNGKDTPLPQEMARWRDTQITRLQY 223

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              L    ++      V+ F + +     L  +      + Y   +    +++DE QDTS 
Sbjct: 224  LPLVEQLKQELHDRAVITFGEQMSKAARLASRHP---QVGYSQRRRFRVVMLDEYQDTSH 280

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q  ++RSL      G        T+ AVGD  Q+IY + GA    +          + +
Sbjct: 281  SQRVLLRSLFGGTDPGL-------TVTAVGDPMQAIYGWRGATAANLENFVGDFPVISLD 333

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            A       EL  S+R+  ++L + + V             +   +  R            
Sbjct: 334  ARTDAPKRELTTSWRNPPEVLELANAVSREVLGPADAPTRTVQPLEPRPGAP-------- 385

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                           Q  W +                 +A  +       +         
Sbjct: 386  -----------TGEVQIGWFATAQEERA---------FVADELKKYWDARSEKFTA---- 421

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                   VLVRKR+ +  +    R       I V       L D   + D++A+   ++ 
Sbjct: 422  ------AVLVRKRRHSEPMAAELRA----RGIPVEIVGLSGLLDVPEVADMVAIATMLVR 471

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--TETVYEYIQKFANCGISKFQHVIKYI 488
             +D+ + + +L  P       DI  +  +             ++         + +   I
Sbjct: 472  PQDNRAALRILGGPHVGLGIADIQVLQRRAANLAGRVRPGSPKEKEPLPEEPLERLAAQI 531

Query: 489  HE------------------------------------------LIHIAQFCSPHDFFTL 506
             +                                          L   +   S  D F  
Sbjct: 532  ADTVPTEPEEIVGLTDAVSDLGEATNFSLEGLRRLRRLAAQLRHLRTNSLGHSVADIFAD 591

Query: 507  ILGAKKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQE-LISELEQYPPT 560
            I      R + ++R             LD F +    +   S   L +      +Q    
Sbjct: 592  IEEVFGIRTEVLARENPRADGATGTVHLDRFADEVAAHSSVSLPELLDYFQLARDQEDGL 651

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH------KHIKKMHIMPSLND 614
                 +   + V+I+TVH AKGLE  +V ++   +  +        K++K +      + 
Sbjct: 652  EPGEVTVRSDRVQILTVHKAKGLEWDIVSVLHADANTYDAKAFTWLKNVKHIPSSLRGDA 711

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ----EEYNRLLYVGMTRASDQLIICKHSNT 670
              G P            +    K      +    EE +RL YVG+TR+   L++   +  
Sbjct: 712  GEGSPELDTSGVENRRDLQAAEKEYTAEVRSSLAEENSRLFYVGITRSERALMVTGSAID 771

Query: 671  SNEKKSNQRTWY----------DMVYDSFHNDERVKKIKLTN--------SINKDEWIAY 712
                ++     +           +V      +  V+K+                 E    
Sbjct: 772  GTTTRAKVPYAHLETLKATAPDAVVTWWEGEEADVEKLPAEEAMYPAVTIPPGVAEGAEL 831

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI--------DT 764
              +T    +     EE  ++ +       +       ++     L  + +          
Sbjct: 832  VRATPSDASFDGGIEELWEREVTVLIDEHRRLQSPTLEVEISRELTATDLVNLKNNPEQF 891

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
              +         N    RG   H+ L+         R                 +  +  
Sbjct: 892  ARRLRRPVPFKPNTYAKRGTQFHQWLE--------DRFGASALLDEDQLPGMDEELSEQT 943

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEY 883
               +                  +   V           +I GR+D +         + ++
Sbjct: 944  FEELRAAFLESRWAD------RTPNYVEHPFEVVIGRHVIRGRMDAVFHEPDDTWLVVDW 997

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLN 941
            KT               I QL++Y              +     YV+    F        
Sbjct: 998  KTGQTPRGAEMDAA---IIQLAVYRIAWASLRGIDPQQVRGAFHYVAHNHTFEPDHLPDA 1054

Query: 942  KAFAEISTKI 951
               A +    
Sbjct: 1055 GELALLLDGA 1064


>gi|258651495|ref|YP_003200651.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM
           44233]
 gi|258554720|gb|ACV77662.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM
           44233]
          Length = 864

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 108/674 (16%), Positives = 203/674 (30%), Gaps = 162/674 (24%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L   +   ++E I            ++T     L   +   Y+E  +    LDF+DLI+ 
Sbjct: 171 LAASISNLKNELIDPETALERADSDQAT-----LVAKVYQGYQERLRAASALDFDDLIMQ 225

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT-------------ED 202
           T  LL++      +     +   H+L+DE QDT+  Q+ ++++L               +
Sbjct: 226 TVFLLQRHPA---VAEHYRRRFRHVLVDEYQDTNHAQYLLVKALVGGTADEQEVRTADGE 282

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                 +   P  L  VGD  QSIY+F GA  + ++  +R               I L  
Sbjct: 283 LVRAAASEVPPAELVVVGDADQSIYAFRGATIRNIVEFERDYPN--------AQTIMLEQ 334

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RST  IL+  + V +     +  +                     LW        +Q 
Sbjct: 335 NYRSTQTILSAANSVIARNPQRRAKN---------------------LW-------TAQG 366

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
              + +     +   +       A+ +   I  ++                 D+ V  R 
Sbjct: 367 GGTRITGYVGDNEHDE-------AQFVGKEIDALVDAGEAV---------FGDVAVFYRT 410

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +  +  +         +           +   +KD +A  R + + +D+++   +L 
Sbjct: 411 NSASRSLEDVF----IRNGMPYRIVGGVRFYERKEVKDALAYLRAVANPDDEINLRRILN 466

Query: 443 SPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIA 495
           +P     +     +      E     E +Q+       A    +      + +  L    
Sbjct: 467 TPRRGIGDRAEACVSVFAERERIGFGEALQRTGEIPGLAARSANSLSSFAELLAGLRSEV 526

Query: 496 QF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR------------- 538
            F   P D  T +L     R +  +    +    ++ LD+ ++                 
Sbjct: 527 GFGMEPADLLTAVLERTGYRAELENSEDPQDGSRLENLDQLVSVLRETTETLLAGGGLAA 586

Query: 539 -------------------------NEQNSYSSLQELISELEQYPPTIKRA--HSANHNE 571
                                    +E     +   L++ LEQ            +    
Sbjct: 587 LGLAADAGPEPGDGADAPAEPGPSADEDVPPDAGDLLLAVLEQLSLVADADSVPDSAEGM 646

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +MT+HTAKGLE PVVF+      +F H+                              
Sbjct: 647 VTLMTLHTAKGLEFPVVFVTGWEDGIFPHQRALG-------------------------- 680

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                     S   E  RL YVG+TRA  +L + +    S   +         + D    
Sbjct: 681 --------DDSELAEERRLAYVGITRAMKRLYVTRAMMRSAWGQPAANPASRFLDDIPAE 732

Query: 692 DERVKKIKLTNSIN 705
               ++        
Sbjct: 733 LIEWRRTDADARAG 746


>gi|121726748|ref|ZP_01679966.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52]
 gi|121630782|gb|EAX63166.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52]
          Length = 1208

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 129/942 (13%), Positives = 269/942 (28%), Gaps = 139/942 (14%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               +   I + ++   +  L      +       +  KS           +         
Sbjct: 263  ALLRRLPILDAWAQSETQDLHVPSELE-EFTQSGLLAKSKKANPPQLALFERIEAFLAEP 321

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             + K      A      +L     +AK  +  L F+DL+   +  L   D    +  +I 
Sbjct: 322  VSLKTPLLVHAIHHCRHWLA----KAKSTHHWLSFDDLLTQLSAAL-DNDEQGLLGERIR 376

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                  +IDE QDT  +Q+ +   L  D+            L  +GD KQ+IY+F GA+ 
Sbjct: 377  SLYPVAMIDEFQDTDPLQYSIFSRLYLDY--------PQCGLLMIGDPKQAIYAFRGADI 428

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               ++ +       T          L  ++RS+A ++  V++VFS   +    S+D    
Sbjct: 429  FTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATHPFIYSDD---- 474

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            I  +          + W        +      E          +    + +A   A  I 
Sbjct: 475  IPFQPVAASPGADKRHWTLEGQVQPALTYWWPEDLDKP---QSKTDYYAQMAEACAAQIQ 531

Query: 355  NMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +++      +    R   I+A D+ VLVR   +  ++      L      SV  ++R  +
Sbjct: 532  HILTASASGAATFHRGEAIEAGDLTVLVRTGNEARMVRD---ALSQQGIASVYLSNRDSV 588

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  +D+  L   +   ED+      + S LF  +  ++  +    +E E +    ++
Sbjct: 589  FASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQ 648

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            +        + V+  +  ++               L   +G +             + E 
Sbjct: 649  YRRLWSE--RGVLPMLRAVLTQRH------IAERWLTESEGERWLTDYL------HISEL 694

Query: 533  LNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L    R   +    L+ L   +              +   +    V+I+T+H +KGLE P
Sbjct: 695  LQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYP 754

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL    S                 ++          +        + +    +    E
Sbjct: 755  LVFLPFVMS-------------YRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAE 801

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------------MVY 686
              RLLYV +TRA     I      +        + +                      + 
Sbjct: 802  DLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGGIADLQQALL 861

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                N   V +        +                  +  +   ++     +  +    
Sbjct: 862  KQCENLPDVAQCPPPKRFEQAYQPPKLDERELTARELSQAIDRRWRVTSYSGLVMQSSHA 921

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLIIHKLLQVIFTLP 797
              + + E  +L     D       +    +          +    G  +H L + +    
Sbjct: 922  RHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQ 981

Query: 798  EHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVS 850
                +           ++   ++    L   +  +L  P       +   M+    +E+ 
Sbjct: 982  SAHSEPNTKIILELMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELE 1041

Query: 851  VSGKINCPKKDII-------------------------ISGRIDQISISQQNIFIFEYKT 885
                I       +                         + G ID +   Q   ++ ++K+
Sbjct: 1042 FLLPIEVLDAPTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQYQGRYYVLDWKS 1101

Query: 886  HHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            +H       + P           +  Q  IY   L     ++
Sbjct: 1102 NHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|153828214|ref|ZP_01980881.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39]
 gi|148876303|gb|EDL74438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39]
          Length = 1208

 Score =  262 bits (670), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 125/893 (13%), Positives = 261/893 (29%), Gaps = 134/893 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    +      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFEQIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   L  D+            L  +GD K
Sbjct: 366  DEQGLLGERIRSLYPVAMIDEFQDTDPLQYSIFSRLYLDY--------PLCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP---QSKTDYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L     
Sbjct: 521  QMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++          +        + 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTGNEEA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------ 683
            +    +    E  RLLYV +TRA     I      +        + +             
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 684  --------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                     +     N   V +        +                  +  +   ++  
Sbjct: 851  GGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTS 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLII 786
               +  +      + + E  +L     D       +    +          +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +      + +           ++   ++    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAQSEPNTKIILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            Q   ++ ++K++H       + P           +  Q  IY   L     ++
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|254483191|ref|ZP_05096424.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214036562|gb|EEB77236.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 717

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/722 (15%), Positives = 226/722 (31%), Gaps = 134/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + + Q          
Sbjct: 30  GAGSGKTRVLVHRIAWLIRAEEFSPWSILAVTFTNKAAKEMRNRIEEMLQIPSHGMWVGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD-EFIKIR------------- 111
           F  L+   L   +         +I      L+   +  ++ E  + R             
Sbjct: 90  FHGLAHRLLKAHWKEAGLPQNFQILDSDDQLRLVKRVCREMELDESRWPPKQAMWYINSQ 149

Query: 112 --DRFNTYKMFKSTLASL-TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSA 167
             +   +  +              +   YE A  +  ++DF +L++  ++L LK  +   
Sbjct: 150 KDEGLRSQHIDAPHGDLYAQTMLQVYRAYEAACDRTGMVDFAELLLRAHELWLKSPE--- 206

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +          IL+DE QDT+ IQ+  +R L                + AVGD+ QSIY
Sbjct: 207 -VLAHYQGRFRQILVDEFQDTNTIQYAWLRVLAGKDIP----------VIAVGDDDQSIY 255

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+ + + R             +    + L  ++RST  IL   + V +      G 
Sbjct: 256 GWRGAKIENIQRFGDDF--------KGTRTVRLEQNYRSTQTILQAANGVIAFNFGRLGK 307

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                +LW        S    +  +  + F+   +       AR
Sbjct: 308 ---------------------ELW-------TSGEQGEPINLYAGFNEHDE-------AR 332

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I + I                  + +L R    + ++            I     
Sbjct: 333 FVVEQIEHWIANGN----------DRASVAILYRSNAQSRVLEEGL----IRGAIPYRIY 378

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                 + + I++ +A  R + S+ DD +   ++ +P        +  +    R    ++
Sbjct: 379 GGQRFYERMEIRNALAYLRLLQSRGDDAAVERVINTPPRGIGSKTLDVVRSCARARELSL 438

Query: 467 YEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQF 517
           ++ I+            +S  +     I+EL       +  +     +         Q+ 
Sbjct: 439 WQSIEAVITEKLLPARALSALEGFTVLINELDSGTDDLTLEELVEHSIEHAGLIEYHQKE 498

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
               G   ++ L+E ++   +  ++       L   L+             + + V++MT
Sbjct: 499 KGEKGQARVENLEELVSAAKQFVKDEAEETSPLQQFLDNAALDAGDAQADEHEDSVQLMT 558

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F H+                                   
Sbjct: 559 LHSAKGLEFPLVFLVGMEENLFPHRMS--------------------------------- 585

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +    EE  RL YVG+TRA +QL I    +       +       + +      +  
Sbjct: 586 -IEEPGRLEEERRLCYVGITRAMEQLTITYAESRRLHGSESFNAPSRFIREIPAELLQEV 644

Query: 697 KI 698
           +I
Sbjct: 645 RI 646


>gi|300115039|ref|YP_003761614.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
 gi|299540976|gb|ADJ29293.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
          Length = 717

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 108/736 (14%), Positives = 221/736 (30%), Gaps = 134/736 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    ++ +N             +  + + L +          
Sbjct: 30  GAGSGKTRVLVHRMAWLIRSQGIAPVNLLAVTFTNKAAGEMRGRIEELLETPAGGMWVGT 89

Query: 66  FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  ++   L    Q+    ++    +   +   ++  L+    +  +   R         
Sbjct: 90  FHGIAHRLLRAHWQEAQLPQDFQILDSEDQYRLIRRILQNLNLDESRWPPRQAQWFINSH 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    + + T   +     +   Y+   +++ ++DF +L++  ++LL+     A +
Sbjct: 150 KDKGLRPQYLEEGTNPHVRQQIRIYHDYQSHCERSGLVDFAELLLRAHELLRDH---AHV 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    H+L+DE QDT+ IQ+  +R L                LF VGD+ QSIY +
Sbjct: 207 LQHYQNRFTHVLVDEFQDTNAIQYAWLRLLAGH----------QGELFIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + +  R               + L  ++RST  IL   + V +      G + 
Sbjct: 257 RGAQIENIQQLSRDFPT--------IRTLRLEQNYRSTGVILAAANAVIANNTERLGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW           + +        +   +       A  I
Sbjct: 308 --------------------LW-------TESEDGEPIKIYQASNERDE-------AHFI 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     DI VL R    + ++            I    +  
Sbjct: 334 IERIHAWKAQGGAG----------SDIAVLYRSNAQSRIVEAALVE----AGIPYRVHGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYE 468
               +   IKD +A    +  Q +D +F  ++ +P     E  + ++     +   ++++
Sbjct: 380 LRFFERAEIKDALAYLHLVTHQNNDSAFERIVNTPPRGIGERTLSQVREYAQQTGVSLWQ 439

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              + A          +  +H    I  +       S       +L        +     
Sbjct: 440 ATIQLAAQQQLPARSATALRHFHSLIEHMATDIMELSLPAQIESVLDHSGLLNHYRKGRG 499

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK-RAHSANHNEVRIMTVH 578
                 +D L E +N   +  ++   SL+ L   L                + V++MT+H
Sbjct: 500 EKSQSRLDNLKELINAASQF-KSEDPSLETLSEFLAHAALESGGTQAEGWEDCVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGLE P+VF++     +F     +                                  
Sbjct: 559 AAKGLEFPLVFMIGMEEGLFPSPQTRHEPERLEEERRL---------------------- 596

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                        YVGMTRA   L +               Q + +     +    E+  
Sbjct: 597 ------------CYVGMTRAQRHLYLIYATRRWLYGSDNYPQPSRFLHEIPTELTSEQRP 644

Query: 697 KIKLTNSINKDEWIAY 712
           +I + +S +     A 
Sbjct: 645 RIDIIHSGSVPRPTAP 660


>gi|85859303|ref|YP_461505.1| exodeoxyribonuclease V subunit beta [Syntrophus aciditrophicus SB]
 gi|85722394|gb|ABC77337.1| exodeoxyribonuclease V beta chain [Syntrophus aciditrophicus SB]
          Length = 1230

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 140/1018 (13%), Positives = 297/1018 (29%), Gaps = 145/1018 (14%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQCIEER 65
            ++         +D W      V  + +  SL+    G     +    L    +       
Sbjct: 215  IAAYRREISKLRDSWKECRETVCSLLRDGSLNGKVYGEYQTDRYVDELDVFLERGGPCFP 274

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
                   F   K +               ++ + +   +     + D        +    
Sbjct: 275  LPKNFEKFTAGKLSRSCRKGCVPPKHHFFEICQVINDLEKRLKVVLDSILLSLKKE---- 330

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               L + ++A     K +  +L F+DL++   D L + +    +   I ++    LIDE 
Sbjct: 331  ---LLQTIHAELPAFKTRRNILFFDDLLLRLRDALGRPE-GDLLAAAIRRKYRAALIDEF 386

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT  +Q+ ++++    F   +   S    +F +GD KQ+IYSF GA+    +   +   
Sbjct: 387  QDTDPVQYAILQA---AFLCNRPEESDKPPIFLIGDPKQAIYSFRGADIFAYMAAAKQVD 443

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
               T          L  ++RS   +L  V+ VF    N       S    +       + 
Sbjct: 444  AAYT----------LQENWRSAPALLNAVNSVFHSHPNPFVYEAISFMDSKPAPGGQKEQ 493

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-FS 364
              +   ++                      L +  +   + + +   IS+++       +
Sbjct: 494  LILAGPDEWDPAPLQLWVIPDHQKGGKVKPLGKGHATPGILQAVTAEISHLLDAGRKGMA 553

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                R I+A D+ VLVR  ++  LI         +  I  V + R  L D L   D+  L
Sbjct: 554  LIGNRRIEAGDVAVLVRSNREARLIQQAL----LEGSIPAVMHSRDNLFDSLEATDMDLL 609

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             R I    D+      + + L   S   ++++     + E   +  + +           
Sbjct: 610  LRAIEVPNDERRLGAAMMTSLLGLSIGALYRLKIDERQWENCLQRFRNYHRQWQE--AGF 667

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            ++ +  L+         D  + +L    G ++            +        R      
Sbjct: 668  MRMMRSLLR------IEDIRSRLLSQPDGERRLT---------NVLHLAEVLHRESLERN 712

Query: 545  SSLQELISELEQY-------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              ++ LI  L +            +    ++   VRI+T+H +KGLE PVVF        
Sbjct: 713  RGMRGLIRWLAEQRDPGKMRSDEHQLRLESDARAVRIVTIHKSKGLEYPVVFCPFVWEGA 772

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                  K   +     D+    +       +    +       +    E  RLLYV +TR
Sbjct: 773  K--DVSKNDALTCHGGDENSFLLCDLGLPHQ----ALHELRAYREGLAERVRLLYVALTR 826

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK------------KIKLTNSIN 705
            A  +  +           +    ++D       N+                ++     + 
Sbjct: 827  AKHRCYLVWGHFNGAGGSAPAYLFHDRTSKWDENNPEEAIAAAASFRNFYNELTGPEILR 886

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
              + IA                       +  K      +  +         + S++   
Sbjct: 887  DLDRIADSAHGSISIADLPVPTAVTPLPNEHWKGTLSRRNFTRKLEQSWRFTSFSSLVFG 946

Query: 766  GKTNLESLLSDNQ----------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
                 E    D +                    G ++H+ L+ +      +      +  
Sbjct: 947  TYVPQEGADRDREEEYRPLKSSDWQVLPPGTQTGNLLHEFLEQLDFKERDEMVLQQRASE 1006

Query: 810  TKNAKLWPAKEYKNLLLSITRLL----------ENPMMTTAMSCDSYSEVSV-------- 851
              ++  + ++    LL  I  +L          ++  ++     D  SE++         
Sbjct: 1007 ALSSHGFDSRWKTALLTLIRNVLALSLSGGGNGQSFRLSDICCGDRISELAFYFPLKRLT 1066

Query: 852  --------------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                                        +++       + G ID + +     ++ ++K+
Sbjct: 1067 RDNLRILFQEISREDPGMVPDSWDLEMERLSFSSVRGWLRGFIDLVFVIDGRYYLLDWKS 1126

Query: 886  HHHVPQ----EIEHIP-----YTHIAQLSIYEKI----LKDSYPNKSLV---CLLIYV 927
            +           E +        +I Q  +Y       LK   P   +      + Y+
Sbjct: 1127 NFLGADPSGYSPEALKSVMVRKHYILQYHLYALALHAYLKQRLPGYRVERHFGGIYYL 1184


>gi|307256307|ref|ZP_07538090.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306865133|gb|EFM97033.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 672

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/675 (16%), Positives = 220/675 (32%), Gaps = 131/675 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +    +     F       L +   P+     +++ K         K        +  R 
Sbjct: 97  KLLGFKSGMTLFDEHDQLALLKHLLPENAAEDKDLLKALISTISNWKNDLLSPETVLTRV 156

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              +          +  +    Y+   K    LDF+DLI+    L ++   +     +  
Sbjct: 157 RDERE--------RVFSHFYRLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAK---ARWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q++ ++L+DE QDT+  Q+E+I+ L  +                VGD+ QSIYS+ GA+P
Sbjct: 206 QKVRYLLVDEYQDTNTSQYELIKLLVGN----------EANFTVVGDDDQSIYSWRGAKP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + + R +               +I+L  ++RS+  IL   + +    ++       S  +
Sbjct: 256 ENMQRLREDF---------DLKVIKLEQNYRSSQRILHCANILIDNNDHIFQKRLFSNLS 306

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              + +                                   + +  +    A RI     
Sbjct: 307 EGEKLN-----------------------------------VIEAKNEEHEAERIV---- 327

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                  + ++      + KD  +L R    + L+      L    +I    +       
Sbjct: 328 -----GELIAHRFSNKTKYKDYAILYRGNHQSRLLEK----LLMQNRIPYKISGGTSFFA 378

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY---- 469
              IKD+MA  R +++Q+DD +F+ ++ +P        + K+      +  +++E     
Sbjct: 379 RAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGAVTLEKLGLLANEKQVSLFEAIFDF 438

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
             IQ+         Q   ++I E+   A+   P      +L   +            +  
Sbjct: 439 ELIQRLTPKPYQALQDFARWIVEIADQAERSDPIQAVKDLLAKIQYEAYLYETAVSPKAA 498

Query: 523 NEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 +     +        E     +L ++++ L       +       ++V++MT+H
Sbjct: 499 EMQSRNVQTLFEWVQGMLEGDEIEEPMTLVQVVNRLTLRDMLERGEDDDEADQVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+                                     
Sbjct: 559 ASKGLEFPHVFLVGMEEGILPHQTSLD--------------------------------- 585

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +   EE  RL YVG+TRA   L   +CK      E    + + + +           +
Sbjct: 586 --EDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKPEPSRFLLELPQDDLVWESE 643

Query: 697 KIKLTNSINKDEWIA 711
           K K+T     ++  A
Sbjct: 644 KPKMTEEQKVEKTSA 658


>gi|46447235|ref|YP_008600.1| ATP-dependent DNA helicase, mutU [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400876|emb|CAF24325.1| probable ATP-dependent DNA helicase, mutU [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 668

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/602 (16%), Positives = 194/602 (32%), Gaps = 135/602 (22%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
             + +    + + +    +DF+ L+  T +LL++      +     +   +++IDE QDT
Sbjct: 170 FVQDVYRRLQASMRAYNAVDFDHLLSLTVELLERFPD---VLEAYQERFRYMMIDEYQDT 226

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ+ +   LT  +          + L  VGD+ QSIY + GA+ K +L  ++      
Sbjct: 227 NPIQYRLASLLTSKY----------QNLCVVGDDDQSIYGWRGADVKNILEFEK------ 270

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  ++I+L  ++RST  IL   + V    +        S     H           
Sbjct: 271 ------ATVIKLEQNYRSTNFILKAANAVIDHNQYRHKKKLWSEKGEGH----------- 313

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                                    + L +       A+ +   I  M          + 
Sbjct: 314 -----------------PIEVFHTPNELEE-------AQVVVKRIVKM---------KES 340

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKND------YKISVVGNDRFILTDHLAIKDLM 422
             +Q KD  +L R    +                     I           +   +KDL 
Sbjct: 341 LNLQWKDFAILYRSNALSRQFETALMRQVWKFQNRWIQGIPYEIFGGTEFYERKEVKDLC 400

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF 481
           A  R I++  D  + + ++  P     ED +  +    R     +++ +++ AN      
Sbjct: 401 AYLRLIINPADQEALLRIVNQPRRGIGEDSLDLLTTHNRQFQRPLWDVLKEVANQKGEGA 460

Query: 482 Q------------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----- 524
           +                 I E     Q  +  +    ++     ++       ++     
Sbjct: 461 KLIYHGKAFKGICEFTHLISEAKKRFQEGNLAENLKWLIEQINYQKAIKEEVKSQQMRDF 520

Query: 525 VIDVLDEFLNFTLRNEQNS------YSSLQELISELEQYPP-TIKRAHSANHNEVRIMTV 577
             + + EF++     EQ +       SSL+  +  +           ++ + + V ++T 
Sbjct: 521 KWENIQEFVSSLAEFEQQAQLNPDLESSLENFLGNMYVDNKFNQSTKNNRHEDRVSLLTF 580

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE PV FLV     +  H+                                   K
Sbjct: 581 HSAKGLEFPVCFLVGMEDHIIPHE-----------------------------------K 605

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
            +K++  EE  RL+YV +TRA   L I          K         +++      ++  
Sbjct: 606 SMKETGIEEERRLMYVAITRAQQHLTISMAQQRKRMGKDMASRPSRFLFEIPKELLKMTD 665

Query: 698 IK 699
            +
Sbjct: 666 WR 667


>gi|254515937|ref|ZP_05127997.1| DNA helicase II [gamma proteobacterium NOR5-3]
 gi|219675659|gb|EED32025.1| DNA helicase II [gamma proteobacterium NOR5-3]
          Length = 717

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 112/722 (15%), Positives = 231/722 (31%), Gaps = 135/722 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    +S                +  + + + Q          
Sbjct: 30  GAGSGKTRVLVHRIAWLIRAEGLSPHALLAVTFTNKAAREMRGRIEHMLQIPTHSMWVGT 89

Query: 66  FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L+   L    ++    +N    + + +   +K   ++ Q +  +   +   + +   
Sbjct: 90  FHGLAHRLLKTHWKEARLPQNFQILDSDDQLRLVKRVCRELQLDESRWPPKQAQWYINAQ 149

Query: 123 TLASLTLAK--------------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L  A                + A YEEA ++  ++DF +L++  ++L  K   +  
Sbjct: 150 KDEGLRAAHIEPPLGDLYIKTMLRVYAAYEEACERGGMVDFAELLLRAHELWLK---APE 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +          IL+DE QDT+ IQ+  +R L  +             + AVGD+ QSIY 
Sbjct: 207 VLAHYQGRFRQILVDEFQDTNTIQYAWLRVLAGNQIP----------VVAVGDDDQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + + R                 ++ L  ++RST  IL   + V +      G  
Sbjct: 257 WRGAKIENIQRFGEDF--------GGTQLVRLEQNYRSTQTILQAANGVIANNSGRLGK- 307

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW    +    Q              L    +    AR 
Sbjct: 308 --------------------ELWSSGETGDSIQ--------------LYAGFNEQDEARF 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I + +       +            +L R    + ++            +      
Sbjct: 334 IVEQIESWVSNGQTRRSA----------AILYRSNAQSRVLEEAL----LRSGLPYRIYG 379

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                + L I++ MA  R ++S+ DD +F  ++ +P        +  +    R    +++
Sbjct: 380 GQRFYERLEIRNAMAYLRLLVSRGDDAAFERVINTPPRGIGSKTLDILRATARENQCSLW 439

Query: 468 EYIQKFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFI 518
           + I       +   +           + EL  +    +  +    ++         ++  
Sbjct: 440 QAIAVCQEHKLLPARALTAMDGFRVLVDELDTLTDPMTLEELVDQMVRRSGLIAYHEKEK 499

Query: 519 SRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
              G   ++ L+E ++       E +  S LQ+ +                + + V++MT
Sbjct: 500 GEKGLARVENLEELVSAARTFVPESDELSPLQQFVDSAALDAGE--GQADPHEDSVQLMT 557

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFL      +F H+                                   
Sbjct: 558 LHSAKGLEFPLVFLAGMEENLFPHRMS--------------------------------- 584

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +    EE  RL YVG+TRA ++LI+    +       +       V +         
Sbjct: 585 -IEEPGRLEEERRLCYVGITRAMERLILTYAESRRLHGSDSYNPPSRFVREIPSELVNEV 643

Query: 697 KI 698
           ++
Sbjct: 644 RL 645


>gi|319763161|ref|YP_004127098.1| uvrd/rep helicase [Alicycliphilus denitrificans BC]
 gi|317117722|gb|ADV00211.1| UvrD/REP helicase [Alicycliphilus denitrificans BC]
          Length = 1095

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 142/932 (15%), Positives = 292/932 (31%), Gaps = 104/932 (11%)

Query: 21   WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
            W L       + +  + ++    P+   K + L  A Q    +   + L     T+    
Sbjct: 246  WLLRRAAGRAMLEDAARALMPLAPSFAAKGEELMAALQAGDWQGVLAAL----FTKDGEG 301

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
                  +          + +  +QDE   +RD    +  +        L++ L   +   
Sbjct: 302  TPRAFGKS-------CPQAVTVAQDEAQTLRDACRQHAAWLHQQRMARLSRRLIECFGAV 354

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            K+++  +D  D+      LL    +S W++ ++D  + H+L+DE QDT+ +QW+ + +  
Sbjct: 355  KREHGWVDMNDVERTALTLLSDPVLSGWVQERLDARVRHLLVDEFQDTNPLQWQALHAWL 414

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
              +         P ++F VGD KQSIY F  AEP+     +   ++              
Sbjct: 415  AGYAGAGGGQH-PPSVFIVGDPKQSIYRFRRAEPQVFKAAQAFVREALGGDLLAC----- 468

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              + R+   ++ VV+      +  Q        T           G +     +      
Sbjct: 469  DHTRRNAQGVIGVVNAAMQAAQAQQEYEGFRAHTTE-----SQDAGRLLRLPPIARTDAR 523

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                      ++ DSL +    +         ++         +      + A +I+VL 
Sbjct: 524  VGGGGAADPLAWRDSLNEPRHEAEE----TLRMAESAQAAQWVAAQLAAGLPASEIMVLA 579

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R+R+    +    R L     I  V  ++  L     ++DL+AL   ++S   DLS   +
Sbjct: 580  RQRERLARMEEALRAL----HIPCVQPEKADLAQAPEVQDLVALLDALVSPAHDLSLARV 635

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI---SKFQHVIKYIHELIHIAQF 497
            LKSPLF   +  + ++   R +   V+                 + +   +         
Sbjct: 636  LKSPLFGADDALLTELALLRRQERHVHLSWFDLLQKQELLALDCRAIAANLSLYKEWVDS 695

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISE 553
              PHD    I        +F +             L   L   L+ +   Y +    +  
Sbjct: 696  LPPHDALQAIYAHGDVLARFAASAPAPQRAGVLANLRALLGAALQQDGGRYLTPYAFVRA 755

Query: 554  LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
            L +    I     A+   VR++TVH AKGLE+  V L+DT ++  S + +  +   P   
Sbjct: 756  LRKGG--IAAPARADAQAVRLLTVHGAKGLEAHSVLLLDTDARPKSAETMAVLVDWPGEE 813

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              P   I++    S        +   +   Q E    LYV +TRA   L +         
Sbjct: 814  PLPRRFIFLASESSPPPSAEGAMAAERAERQREALNTLYVAVTRAKRCLALSCVQ----S 869

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
              +N  +W+  +      D          ++   +     ++       P      +   
Sbjct: 870  GSANPGSWWARLAPLMQQDAD----PQAGAMGAQDAGDGAFTLLELPRLPAAPGLPVAAP 925

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV- 792
                                                      D+    +G  +H LL+  
Sbjct: 926  -------------------------------------RQPAQDSLASRQGQAMHALLEQV 948

Query: 793  ----IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
                +       R            +             + + + N     A        
Sbjct: 949  GVAGLPLAEARARGWGQERLAQLAREFALPLPAARAAARMAQAILNGAGAWAWDEAQLEL 1008

Query: 849  VSVSGKINCPKKDIIISGRIDQIS-----ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
                  +    + + +    D++            ++ +YK+     ++ + +      Q
Sbjct: 1009 AVNEAPLTHQGQGLRL----DRLVCLRERRGGARWWVLDYKSAAQPERQGDLVA-----Q 1059

Query: 904  LSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            L  Y + ++   P +++    +   + ++  +
Sbjct: 1060 LQRYREAVRAQVPGEAVGAAFL-SGDGRLVEL 1090


>gi|258627298|ref|ZP_05722082.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603]
 gi|258580336|gb|EEW05301.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603]
          Length = 1208

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 129/942 (13%), Positives = 269/942 (28%), Gaps = 139/942 (14%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               +   I + ++   +  L      +       +  KS           +         
Sbjct: 263  ALLRRLPILDAWAQSETQDLQVPSELE-EFTQSGLLAKSKKGNPPQLALFERIEAFLAEP 321

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             + K      A      +L     +AK  +  L F+DL+   +  L   D    +  +I 
Sbjct: 322  VSLKTPLLVHAIHHCRHWLA----KAKSTHHWLSFDDLLTQLSAAL-DNDEQGLLGERIR 376

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                  +IDE QDT  +Q+ +   L  D+            L  +GD KQ+IY+F GA+ 
Sbjct: 377  TLYPVAMIDEFQDTDPLQYSIFSRLYLDY--------PQCGLLMIGDPKQAIYAFRGADI 428

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               ++ +       T          L  ++RS+A ++  V++VFS   +    S+D    
Sbjct: 429  FTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATHPFIYSDD---- 474

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            I  ++         + W        +      E          +    + +A   A  I 
Sbjct: 475  IPFQAVAASPGADKRHWTLEGQVQPALTYWWPEDLDKP---QSKTDYYAQMAEACAAQIQ 531

Query: 355  NMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +++      +    R   I+A D+ VLVR   +  ++      L      SV  ++R  +
Sbjct: 532  HILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGIASVYLSNRDSV 588

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  +D+  L   +   ED+      + S LF  +  ++  +    +E E +    ++
Sbjct: 589  FASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQ 648

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            +        + V+  +  ++               L   +G +             + E 
Sbjct: 649  YRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL------HISEL 694

Query: 533  LNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L    R   +    L+ L   +              +   +    V+I+T+H +KGLE P
Sbjct: 695  LQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYP 754

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL    S                 ++          +        + +    +    E
Sbjct: 755  LVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTGNEEALAKADQERLAE 801

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------------MVY 686
              RLLYV +TRA     I      +        + +                      + 
Sbjct: 802  DLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGGIADLQQALL 861

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                N   V +        +                  +  +   ++     +  +    
Sbjct: 862  KQCENLPDVAQCPPPKRFEQAYQPPKLDERELTARELSQAIDRRWRVTSYSGLVMQSSHA 921

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLIIHKLLQVIFTLP 797
              + + +  +L     D       +    +          +    G  +H L + +    
Sbjct: 922  RHDPLQDIPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQ 981

Query: 798  EHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVS 850
                +           +    A+    L   +  +L  P       +   M+    +E+ 
Sbjct: 982  SAHSEPNTKIILDLMESDQIEAEWLPVLQQLVDTVLSTPLDGKALRLQQIMAAQRLTELE 1041

Query: 851  VSGKINCPKKDII-------------------------ISGRIDQISISQQNIFIFEYKT 885
                I       +                         + G ID +   Q   ++ ++K+
Sbjct: 1042 FLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHPVQGMLKGFIDLVFQYQGRYYVLDWKS 1101

Query: 886  HHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            +H       + P           +  Q  IY   L     ++
Sbjct: 1102 NHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|210135645|ref|YP_002302084.1| DNA helicase II [Helicobacter pylori P12]
 gi|210133613|gb|ACJ08604.1| DNA helicase II [Helicobacter pylori P12]
          Length = 681

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 94/572 (16%), Positives = 180/572 (31%), Gaps = 118/572 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+ A KK+ ++DF+DL+  +  +L+  +    +  +  +   +I++DE QDT+ +Q 
Sbjct: 158 YELYQNALKKDNLVDFDDLLCLSLKILQDNE---KLAKETSEHYYYIMVDEYQDTNALQL 214

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E ++ L+           +   L  VGD+ QSIY F GA+   +L   +          +
Sbjct: 215 EFLKKLS----------FTHHNLCVVGDDDQSIYGFRGADISNILNFSKHF--------K 256

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +++L  ++RS+A+IL   + + S  ++    +         +S +      V     
Sbjct: 257 GAKVVKLETNYRSSAEILACANSLISHNQHRHIKT--------LQSFKGSHKSVVCKEYL 308

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +                               +AY I  ++       N        
Sbjct: 309 TQKEESLD---------------------------VAYQIKALLKRGENLEN-------- 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I +L R    +  I      L     I           +   +KD +A    +  ++D
Sbjct: 334 --IAILYRLNGLSRSIEESLNAL----NIPYRLIGAVSFYERAEVKDALAFMHLVAKKDD 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKIC-------TQRHETETVYEYIQKFANCGISKFQHVIK 486
                 +L  P     +     I            E   +  +  K         +  + 
Sbjct: 388 RFFIKRVLNKPSRGLGKITQEWIFSLLDDLDLNLEEALKLGAFKDKLNPKNEYALKKFMT 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYS 545
            I  L   A   S   F    L      + +       E    + E L     + + + +
Sbjct: 448 MIGRLRE-AFEISVEKFCAQFLEETNLLKSYEKEDNYEEREGFVKELLTLLKEHFKTNPT 506

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L+  L +    +    + N  +V  M+VH +KGLE   VF++      F H     
Sbjct: 507 --HSLLDFLNESVLDVHN--TENAPKVSCMSVHMSKGLEFKHVFVIGLEEGFFPH----- 557

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             ++S  EE  RL YV +TRA + L + 
Sbjct: 558 ------------------------------RGFNQESDLEEERRLAYVAITRAKEGLQLS 587

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                S   +    +    + ++    +    
Sbjct: 588 YVKERSYFGRKISCSPSVFLEEAQLLKQEKPP 619


>gi|268592938|ref|ZP_06127159.1| ATP-dependent DNA helicase Rep [Providencia rettgeri DSM 1131]
 gi|291311730|gb|EFE52183.1| ATP-dependent DNA helicase Rep [Providencia rettgeri DSM 1131]
          Length = 674

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 114/714 (15%), Positives = 233/714 (32%), Gaps = 136/714 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I+ + +L +E        KA  ++        +++ +
Sbjct: 59  AAREMKERV-AQTLGKKEARGLIISTFHTLGLEIIKREY--KALGIKANFSLFDDQDQMA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL    LT     +   + +++     + K  L   Q    + R     +          
Sbjct: 116 LLKE--LTFDLLEEDKDLLKQLISAISNWKNDLISPQQVIGQARSEKEHH---------- 163

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    YE   K   VLDF+DLI     LL + +    +R +  Q+I ++L+DE QD
Sbjct: 164 --FAECYRRYELHLKSCNVLDFDDLISKPTLLLYQNEE---VRERWQQKIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L                   VGD+ QSIYS+ GA P+ ++   +   K 
Sbjct: 219 TNTSQYQLVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLNQDFPK- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I+L  ++RS+  IL   + + +   +       S                
Sbjct: 268 -------LNVIKLEQNYRSSERILKAANILIANNPHVFEKKLFS---------------- 304

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                              E        +   ++    A R+   I  +I    I     
Sbjct: 305 -------------------ELGYGAPLRVLTANNEDHEAERV---IGELIAHHFI----- 337

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + KD  +L R    + +   +        +I    +          IKDL+A  R 
Sbjct: 338 -NKTEYKDYAILYRGNHQSRIFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQ--HV 484
           + + EDD +F+ ++ +P        I K+        +++Y+         I K +    
Sbjct: 393 LTNPEDDSAFLRIVNTPRREIGPKTIQKLGEWANQRGKSLYQASFDLGLEQILKGKGLEA 452

Query: 485 IKYIHELIHIAQFCSPHD---FFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFT 536
           ++     +      S  +       +L                +     +  +++   + 
Sbjct: 453 LQRFTHWMDSIVRTSEREPLIAVRDLLREMDYESWLYETSTSTKAAEMRMKNVNQLFTWM 512

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  + N   +L ++++         +       ++V++MT+H +KGLE P VFLV 
Sbjct: 513 SEMVEGDDLNDPMTLSQVVTRFTLRDMMERGEDDEESDQVQLMTLHASKGLEFPYVFLVG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       ++  +E  RL Y
Sbjct: 573 MEEGLLPHQSSID-----------------------------------ENNIDEERRLAY 597

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           VG+TRA  +L            +  +      + +   +D + ++ +   S  +
Sbjct: 598 VGITRAQRELFFSHCRERRQYGELIRPELSRFLLELPQDDLQWEQQRKVVSAQE 651


>gi|227357186|ref|ZP_03841555.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
 gi|227162718|gb|EEI47685.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
          Length = 679

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 109/656 (16%), Positives = 218/656 (33%), Gaps = 124/656 (18%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S F  Q  +     +T ++ ++  DL  +LK     +               +    T A
Sbjct: 112 SLFDDQDQSALLKELTVDLLEEDKDLLSQLKSQISNWKNDMLTPEQVIGRAQSQQDHTFA 171

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           +     YE+      VLDF+DLI     LL+  +    +R +  Q I ++L+DE QDT+ 
Sbjct: 172 ECF-RRYEQHLLSCNVLDFDDLISKPTLLLRTNEE---VRARWQQRIRYLLVDEYQDTNT 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  +                VGD+ QSIYS+ GA P+ ++  ++   +    
Sbjct: 228 SQYELVKWLVGE----------RARFTVVGDDDQSIYSWRGARPQNLVLLQKDFPQ---- 273

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++I+L  ++RS+  IL   + +     +       S                   
Sbjct: 274 ----LNVIKLEQNYRSSGRILKSANILIENNPHVFEKRLFS------------------- 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                           E        +   ++    A R+A           + ++     
Sbjct: 311 ----------------ELGYGDELRVLTANNEEHEAERVA---------GELIAHHFINK 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  +L R    + +            +I    +          IKD++A  R I +
Sbjct: 346 TNYKDYAILYRGNHQSRIFEKYL----MQNRIPYRISGETSFFSREEIKDILAYLRVITN 401

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQH 483
            +DD +F+ ++  P        I K+    +   ++++                +S  Q 
Sbjct: 402 PDDDAAFLRIVNKPRREIGPMTIQKLGEWAKVRDKSLFNACFDLGLSQTLTGRGLSALQA 461

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLR 538
             +++  ++  ++          +L               ++     +  +++  ++   
Sbjct: 462 FSQWMARIVQQSEREPLLA-VRDLLHEMDYESWLYETSSSAKAAEMRMKNINQLFSWMSE 520

Query: 539 N----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E +   +L ++++         +       ++V++MT+H +KGLE P VFLV   
Sbjct: 521 MLEGDELHEPMTLSQVVNRFTLRDMMERGETDEELDQVQLMTLHASKGLEFPHVFLVGME 580

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +  H+                                       +   EE  RL YVG
Sbjct: 581 EGILPHQSSID-----------------------------------EDNVEEERRLAYVG 605

Query: 655 MTRASDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           +TRA   L   +CK      E    + + +              K K+ ++  K E
Sbjct: 606 ITRAQKTLTFTLCKERRQYGELIRPEPSRFLYELPQDDLHWDTNKKKVLSAQEKQE 661


>gi|270157153|ref|ZP_06185810.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968]
 gi|289164442|ref|YP_003454580.1| UvrD/REP helicase family protein [Legionella longbeachae NSW150]
 gi|269989178|gb|EEZ95432.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968]
 gi|288857615|emb|CBJ11455.1| putative UvrD/REP helicase family protein [Legionella longbeachae
            NSW150]
          Length = 1084

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 171/916 (18%), Positives = 308/916 (33%), Gaps = 143/916 (15%)

Query: 53   LQQASQ-TQCIEERFSLLSSFFLTQKFTPQKNIIT--------------QEINKKSPDLK 97
            L+         +E    LS   LT+    +K+                 + I   S +L 
Sbjct: 260  LRDWHDFEHADQETVKALSKLLLTKDAGFRKSFDHHVGLLASSCSPDEYKRIKNASKELL 319

Query: 98   EKLKKSQDEFIKIRDRFNTYK------MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
             +L +  D    +    N          ++   A   L   L  H      +   +DF  
Sbjct: 320  NELSEYPDFLEALIQVSNLPDPQYDPEQWQVLQALFLLLPLLVGHLHVLFSEKNEVDFTT 379

Query: 152  LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
            +       L   D    +   +D  ++HIL+DE QDTS+ Q+E++  L   +  G     
Sbjct: 380  ISQQALSALGDADNPTDLALYLDNTLHHILVDEFQDTSITQFELLTKLVHGWQEGDG--- 436

Query: 212  SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
              +TLF VGD  QSIY F  AE     R K            K   +EL  +FRST  I+
Sbjct: 437  --KTLFIVGDPMQSIYRFRQAEVGLFFRAKEQ-----GIGSVKLHPLELSCNFRSTQTIV 489

Query: 272  TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              V+K F+                   +    + G+V     V    D + +        
Sbjct: 490  DWVNKHFAHI---------------FPAQIDIESGSVPFHPSVNVIKDKENSTIY----- 529

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                  +E  A  L   + + +                    K+I +LVR R     I  
Sbjct: 530  AIKFKTREQEAQKLIEAVQHELQA---------------YPQKNIAILVRSRTQLSAIIR 574

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
            L R     ++I   G D  +LT    ++D+ +L + +L+  + LS++ +L+SP    S  
Sbjct: 575  LLR----QHQIPYQGTDITLLTHLSHLRDVWSLTQALLTPANRLSWLAVLRSPYCGLSLS 630

Query: 452  DIFKICTQRHETETVYE-----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
            DI  I     +    +       IQ  +  GI + + +I  +H+ +          +   
Sbjct: 631  DIHAIARFNTKKSIYFALLNLNQIQGISEEGIIRARFLIHVMHQALTQRYETQLSSWVIH 690

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
             L          +      ++ L+++     R EQ+    L ++   L         +  
Sbjct: 691  TLKKL----HIENILNESQLNDLEQYWTLLDRYEQDGR--LPDMKEFL--MELNKLYSQQ 742

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP--- 623
             N + + +MT+H +KGLE   V L   G+Q           +     +   + +  P   
Sbjct: 743  TNSSRLHVMTIHKSKGLEFDTVILPGLGAQANHGDKPMLRWLNLPTQNHGNLLLMSPIQA 802

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
              +    +   L +  +  ++ E  RLLYV +TRA  +L +         +KS++ ++  
Sbjct: 803  AHQEHCALYDYLTQLDEIKSRYETQRLLYVAVTRAKSRLYLM-----DYSEKSSKSSFRS 857

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
            ++                                        ++E I+           L
Sbjct: 858  LLK---------------------------------------QQEFIEVDPAYPAEEGTL 878

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
              P    +   + L P            + L+ +     G+I H+LL  I          
Sbjct: 879  SFPKLLRLPLNFYLTPKPDVFFNNKTSTTSLTTSIPRLIGIITHRLLHWICNNHPETIAE 938

Query: 804  F---ITSYCTKNAKLWPAKEYKNLLL---SITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
                +  Y  +        +   L      IT+L E+P  +  ++     E+    ++  
Sbjct: 939  VPWGLPRYELRKLGFDEKMQLDALQTIQNQITKLFEDPTGSWIIAKHHQ-EL-NEYELLV 996

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
             +K+I I+  ID+    Q   ++ ++KT      E E     H  QL+ Y   L      
Sbjct: 997  KQKNIPITRIIDRTFEDQGKCWVIDFKTGK----EDEASLLKHQQQLNEYGSYLSSR-SQ 1051

Query: 918  KSLVCLLIYVSEPKVF 933
              + C + Y++     
Sbjct: 1052 LPIYCGIYYLASNHWI 1067


>gi|163732146|ref|ZP_02139592.1| UvrD/REP helicase [Roseobacter litoralis Och 149]
 gi|161394444|gb|EDQ18767.1| UvrD/REP helicase [Roseobacter litoralis Och 149]
          Length = 868

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 111/599 (18%), Positives = 196/599 (32%), Gaps = 125/599 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+    +   +DF DL+++   + +  D    +  +  +   +IL+DE QDT++ Q
Sbjct: 196 LYAQYQRRLIELNAVDFGDLLLHMVTIFQTHDD---VLKQYQRWFAYILVDEYQDTNVAQ 252

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R L              + +  VGD+ QSIY + GAE   +LR ++          
Sbjct: 253 YLWLRLLAA----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------- 295

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS----EDSTTTIRHRSSRIGQVGTV 308
               ++ L  ++RST  IL     V    E   G +     D    IR      G+    
Sbjct: 296 -GAHVVRLEQNYRSTPHILAAASGVIEGNEGRLGKTLWTAADEGERIRLIGHWDGEEEAR 354

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQE------SSASILARRIAYTISNMIGTDTI 362
            + E + +  D      +    S    + +E      + A +    I   +  +   ++ 
Sbjct: 355 WIGEDIEALCDGSSYLAKRRQNSRSQQIMEEVKRLDNNDALLGLNSIEQLLERLKQHESF 414

Query: 363 FSNGKKRVIQA---------------------KDILVLVRKRKDTPLITFLTRFLKNDYK 401
            S  K R +                       ++I +LVR                    
Sbjct: 415 LSKEKNRDLLWELTTRQQEGLSLEPVFLRFNSEEIAILVRASHQMRAFEDRF----LTIG 470

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           +           + + I+D MA  R ++S ++DL+F  ++ +P     +     I  T R
Sbjct: 471 LPYRVIGGPRFYERMEIRDAMAYFRVVVSPDNDLAFERIVNTPKRGLGDKAQQTIQVTAR 530

Query: 461 HETETVYE------YIQKFANCGISKFQHVIKYIHELIHIAQFC---------------- 498
               +++E              G ++ + +++ I   I +                    
Sbjct: 531 ANGVSLFEGARLAVAQGLIKGKGGTELRKLVEGIDRWIAMLHQRKHVDGDVVIDDGGEGA 590

Query: 499 ---SPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELIS 552
              S  +   +IL        + +    E    ++ L E +      E         L  
Sbjct: 591 LAFSHIELAEVILDESGYTTHWQNEKTPEAPGRLENLKELVKALENFEN--------LQG 642

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            LE     +         +V IMT+H AKGLE P+VFL      +F  +           
Sbjct: 643 FLEHVSLIMDNESDDGGAKVSIMTLHAAKGLEFPMVFLPGWEDGLFPSQRS--------- 693

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                  +        EE  RL YVG+TRA +   I   SN  
Sbjct: 694 -----------------------MDESGLKGLEEERRLAYVGITRAEEVCTISFVSNRR 729


>gi|262393458|ref|YP_003285312.1| exodeoxyribonuclease V subunit beta [Vibrio sp. Ex25]
 gi|262337052|gb|ACY50847.1| exodeoxyribonuclease V beta chain [Vibrio sp. Ex25]
          Length = 1224

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 159/1021 (15%), Positives = 312/1021 (30%), Gaps = 167/1021 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMET-------GNPTIL-----KKAQTLQQASQT 59
            +     + LW  P   +SDI+ Y++ +  +       G+   L     KK   L+ A   
Sbjct: 193  TLAGEIRQLWGSPSALLSDISNYLTGAPLSLSVPAMKGSLADLHTENLKKIDELK-AQWR 251

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------ 105
            +  ++  +L+S   + ++   +K++ T                D  +KL+K         
Sbjct: 252  ESQDDFLTLISDSDINKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEK 311

Query: 106  ---------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                        +  + F    +           ++       AK +   L F+DL+   
Sbjct: 312  TPKGSAPQHAVFEAIETFLANPISLKAPLLAHAIEHCRVMLANAKNQKQWLSFDDLLTQ- 370

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                   D S  +  +I       +IDE QDT  +Q+ +   +          ++    L
Sbjct: 371  LSASIDTDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIY--------LNNPECGL 422

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++
Sbjct: 423  FMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVQAVNQ 472

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS- 335
            VF++P++      D    I     +       ++W         Q  P    W    D  
Sbjct: 473  VFALPDSPFIYDSD----IPFLPVKYSPNAEKRIWTM-----GGQKQPALTYWLQEADDK 523

Query: 336  -LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
             LP+    + +A   A  I  ++     G   + +  K++ +QA DI VLVR   +  +I
Sbjct: 524  PLPKGEYLTRMAEATASQIQTILTQAQQGQACLVNGEKQKAVQAGDIAVLVRTGSEGRMI 583

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                + L +    SV  ++R  +      +DL  L + +L+ E+D +    L S LF   
Sbjct: 584  K---QALADQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALD 640

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               +  +           E + + A     +++ +      L  +    S       +L 
Sbjct: 641  AASLDALNND--------EVVWENAVNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLE 692

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKR 563
                 Q          +  + E L        + +  L+ L   +              +
Sbjct: 693  EGASSQGENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAENGLGGSDDQIQ 752

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               +  N V+I+T+H +KGLE  +VFL                      ++         
Sbjct: 753  RLESERNLVQIVTIHKSKGLEYDLVFLPFV-------------FSYREASEAKYYDAAND 799

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
            ++          +K   K    E  RL+YV +TRA     I      +          + 
Sbjct: 800  RTVLDITGNDASMKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGVHR 859

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                    + +   I   +     +    +          LE +    Q        K+L
Sbjct: 860  SAIGYLIQNGQEGGINDLHQGLTQQQDELDCVVVADPPQQLEEKYVAPQEEIHDLSAKEL 919

Query: 744  FSPIKNDINEPYIL-------------------------NPSTIDTKGKTNLESLLSDNQ 778
             +PI  +                                +    +        S+ +  +
Sbjct: 920  QNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEADLLEPERSIFTFPR 979

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPM- 836
                G  +H L + I        +           ++    +    L   I  +L  P+ 
Sbjct: 980  GARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDTVLATPLD 1039

Query: 837  -----MTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISG 866
                 +          E+     I       +                         + G
Sbjct: 1040 GKSLLLNQKAPSQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGMLKG 1099

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKDSYPN 917
             ID +   Q   ++ ++K++H          E +      + +  Q  IY   L     +
Sbjct: 1100 FIDLVFEHQGKYYVLDWKSNHLGDDVTSYHGEALKSAMADHRYDLQYQIYALALHRFLRS 1159

Query: 918  K 918
            +
Sbjct: 1160 R 1160


>gi|307260740|ref|ZP_07542429.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869579|gb|EFN01367.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 672

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/675 (16%), Positives = 223/675 (33%), Gaps = 131/675 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +    +     F       L +   P+     +++ K    L   +   +++   +    
Sbjct: 97  KLLGFKSGMTLFDEHDQLALLKHLLPENAAEDKDLLKA---LISTISNWKNDL--LSPEM 151

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              ++         +  +    Y+   K    LDF+DLI+    L ++   +     +  
Sbjct: 152 VLTRVRDERE---RVFSHFYQLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKT---RWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q++ ++L+DE QDT+  Q+E+I+ L  +                VGD+ QSIYS+ GA P
Sbjct: 206 QKVRYLLVDEYQDTNTSQYELIKLLVGN----------EANFTVVGDDDQSIYSWRGARP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + + R +               +I+L  ++RS+  IL   + +    ++       S   
Sbjct: 256 ENMQRLREDF---------DLKVIKLEQNYRSSQRILHCANILIDNNDHIFQKRLFSNLG 306

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              + +                                   + +  +    A RI     
Sbjct: 307 EGEKLN-----------------------------------VIEAKNEEHEAERIV---- 327

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                  + ++      + KD  +L R    + L+      L    +I    +       
Sbjct: 328 -----GELIAHRFSNKTKYKDYAILYRGNHQSRLLEK----LLMQNRIPYKISGGTSFFA 378

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY---- 469
              IKD+MA  R +++Q+DD +F+ ++ +P        + K+      +  +++E     
Sbjct: 379 RAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGAVTLEKLGLLANEKQVSLFEAIFDF 438

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
             IQ+         Q   ++I E+   A+   P +    +L   +            +  
Sbjct: 439 ELIQRLTPKPYQALQDFARWIVEIADQAERSDPIEAVKDLLAKIQYEAYLYETATSPKAA 498

Query: 523 NEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 +     +        E     +L ++++ L       +       ++V++MT+H
Sbjct: 499 EMQSRNVQTLFEWVQGMLEGDEIEEPMTLVQVVNRLTLRDMLERGEDDDEADQVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+                                     
Sbjct: 559 ASKGLEFPHVFLVGMEEGILPHQTSLD--------------------------------- 585

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +   EE  RL YVG+TRA   L   +CK      E    + + + +           +
Sbjct: 586 --EDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKPEPSRFLLELPQDDLVWESE 643

Query: 697 KIKLTNSINKDEWIA 711
           K K+T     ++  A
Sbjct: 644 KPKMTEEQKVEKTSA 658


>gi|297625889|ref|YP_003687652.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921654|emb|CBL56211.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 829

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/618 (15%), Positives = 174/618 (28%), Gaps = 140/618 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y+   +    +DF+DLI+ T  LL        IR K  +    +L+DE QD
Sbjct: 210 ELYAQAYEEYQRRLRAANAMDFDDLIMITVQLLHDHPD---IREKYRRRFRQVLVDEYQD 266

Query: 188 TSLIQWEVIRSLTEDFFVGKNT-HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+ +IR L        +     P  L  VGD  QSIY+F GA+ + +L  ++    
Sbjct: 267 TNHAQYLLIRELCAPNEDQIDAPRVDPPELLVVGDSDQSIYAFRGADVRNILDFEQDFP- 325

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      I L  ++RST  IL+  + V             S               
Sbjct: 326 -------GARTILLEQNYRSTQTILSAANAVIQHNSGRPVKKLWS--------------- 363

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                       D+    +   W +  +           AR +A  I  +          
Sbjct: 364 ------------DAGDGDKIIGWVADTEHDE--------ARWVAEKIDELHDHQQ----- 398

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   D  V  R    +     +         +           +   ++D +A  R
Sbjct: 399 ----AAYSDAAVFYRTNAQSRAFEEVF----IRLGLPYRVVGGVRFYERREVRDALAYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGIS 479
            I +  DD+S   ++  P           +      ++    + + +       A     
Sbjct: 451 AIANPADDVSIRRIINVPKRAIGARAETALEMFAVSQSIPFSQAVDRAAEVPGLATRSRH 510

Query: 480 KFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNF 535
           + +     +     + A   S  +    +L       +       +    ++ L E +  
Sbjct: 511 QVESFASMMAGFRGLVAAGSSADEVVAAVLKDSGLLDELKDSKDPQDETRVENLVELVAV 570

Query: 536 TLRNEQ---------------------------------NSYSSLQELISELEQYPPTIK 562
                                                   +  SL   +  +     + +
Sbjct: 571 AQEFVAQAHTLDLSAGLRPDAPGDQDAPELADELVAGMPEADDSLGAFLERIALVADSDQ 630

Query: 563 RAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
              S   +   V +MT+HTAKGLE   VFL      +F H                    
Sbjct: 631 IPDSDPDSAGVVTLMTLHTAKGLEFDNVFLTGMEDGIFPH-------------------- 670

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                         +      +   E  RL YVG+TRA  +L + + +  +   +     
Sbjct: 671 --------------MRALADPAELSEERRLAYVGITRARRRLFMSRAAVRTVWGQPQYNP 716

Query: 681 WYDMVYDSFHNDERVKKI 698
               + +        ++ 
Sbjct: 717 PSRFLEEIPAELIDWQRT 734


>gi|239917997|ref|YP_002957555.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|281415827|ref|ZP_06247569.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|239839204|gb|ACS31001.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
          Length = 1176

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 133/1125 (11%), Positives = 282/1125 (25%), Gaps = 232/1125 (20%)

Query: 1    LKNRFGLSL-NESYELIYKDLWPLPYFQVSDINKYVSL-------SMETGNPTILKKAQT 52
            L++   +   +   E + +      +     + +   L       +   G     +    
Sbjct: 108  LRSGLEIPGFDGEPEDLGRASVSTYHSYAGALVRDHGLRIGVEPEARLLGGADAHRLMGA 167

Query: 53   LQQASQ--TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + ++       +    S L +  L       ++++T +  +       +   +     + 
Sbjct: 168  VVRSHPVVADTLGVAPSRLITQALRLAGDMAEHLVTADEVRGFLARLAEQGSALPLPPRA 227

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +      + F + LA   L   L A Y+E K++  V+DF DL+ +   +  +   +    
Sbjct: 228  KTPSKEIQEFLTGLADRALMADLVARYDEVKREQDVMDFGDLLRHAARIAVEVPAAG--- 284

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +       +L+DE QDTS  Q  +   L        +       + AVGD  QSIY F 
Sbjct: 285  EQERARFPVVLLDEFQDTSHAQMRIFAGLFGPRGPEDDAPGLGHCVTAVGDPHQSIYGFR 344

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSII-----ELPLSFRSTADILTVVDKVFSIPENAQ 285
            GA   ++        +  T  G     +      L +++R+   IL V + V +      
Sbjct: 345  GASAGQLFAFPHAFPRLETGPGGAPRRVNADVSHLTIAWRNEESILAVANAVAAPLNAHA 404

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              +  +   +     R G    V   ++ V+  +                          
Sbjct: 405  AATGGAPVEVCTLRPRPGAGEGVVRVDRFVTAEE-------------------------E 439

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A  +   +  + G                   VL R R     +            +   
Sbjct: 440  AADVVARLGALTGAGPGG--------TTPSRAVLCRTRAQFGPVLDALDA----AGLPYE 487

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                  L     + +++A+   +         V +L  P +     D+  +  +      
Sbjct: 488  VLGLSGLLALPEVAEVLAVLHVLADPTRSDQLVRLLTGPRWRIGVADLEVLQERARFVSR 547

Query: 466  VYE---------------------------------------------------YIQKFA 474
            +                                                       + F+
Sbjct: 548  LRAGRAAGGREDPAGDAPDVAPVRDVSPEEDADAAALLEALDSLPGEGTDWVGSRGRGFS 607

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDE 531
              G+++ + V   +  L        P D    ++       +   R G         L+ 
Sbjct: 608  PEGLARLRAVNAELRRLFTRTGE-DPADLIAEVIRETGLDVEVALRPGVSAAAARRHLNA 666

Query: 532  FLNFTLRNEQNSYS-SLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            F +        + +  L   ++     LE                V+++T H +KGLE  
Sbjct: 667  FQDAARDFGAGTTATDLTAFLAWTESVLEHEDGLGVENAEPTPGLVQVLTAHASKGLEWD 726

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK--------- 637
            VV +       F      +     +      +          +   +   +         
Sbjct: 727  VVAVPGLQEGTFPSTRADRWTSPGAGALPWPLRGDRASLPQWDGSWAQDQRDWVQSAGTK 786

Query: 638  ----------------HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-NEKKSNQRT 680
                             +    + E  RL YV  TRA   L +        N++      
Sbjct: 787  YSSKAAQEGNPDPYAVAVAAHAEREERRLAYVAYTRARSALWLSTSLFKGVNKEPLPASA 846

Query: 681  WYDMVYDSFHNDE--RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
            + + V           +      + + +    A           PL+  E      ++ +
Sbjct: 847  FLEEVAGLAGQVPGVALGPAPAEDDLPEANPAAGRTLVARWPFDPLDGPEAFVADPEDPE 906

Query: 739  IPKKLFSPIKN------------------------------------------------D 750
              ++     +                                                 +
Sbjct: 907  DEERWQPLPRRSRARREAVEAAAAAVHAADPAALADDPELARQVDWVLLRRRDVAGTGGE 966

Query: 751  INEPYILNPSTIDTKGKTN--------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
               P  ++ S                             RG   H  L+           
Sbjct: 967  TALPEHVSVSLYGELAADPQAVAEQLRRPLPRPPAHAARRGTAFHAWLE----------- 1015

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE---VSVSGKINCPK 859
                 +         + E    L  +   L+   M        ++E     V   +    
Sbjct: 1016 ---ERFGATGMLDIDSAEDAADL-WVDEALDLGPMQEWFRSSRWAERTPAFVEAPVETTV 1071

Query: 860  KDIIISGRIDQISISQQ----------NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
              I + GR+D I  S            +  + ++KT          +      QL++Y  
Sbjct: 1072 GGITLRGRVDAIYRSGGDPRLPFDPEADWELVDWKTGAVPRGRDLELKS---LQLAVYRL 1128

Query: 910  ILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
                 +  P + +    +YV+  +    P     +      T  P
Sbjct: 1129 AWSRLHGIPLERIGASFVYVAHGQERSFPDLPGEEELERHITDAP 1173


>gi|110596834|ref|ZP_01385124.1| UvrD/REP helicase [Chlorobium ferrooxidans DSM 13031]
 gi|110341521|gb|EAT59981.1| UvrD/REP helicase [Chlorobium ferrooxidans DSM 13031]
          Length = 740

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 102/552 (18%), Positives = 181/552 (32%), Gaps = 118/552 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y    K+N  LDF+DL+I   +L  +      +  ++     +I+IDE QDT+
Sbjct: 170 AAQVYELYTRKLKENNALDFDDLLIKPIELFNEHPE---VLEELQDAFRYIMIDEYQDTN 226

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ V + L           +  R +F VGD+ QSIYS+ GA+   +L  +        
Sbjct: 227 KAQYLVAKML----------GARHRNIFVVGDDAQSIYSWRGADISNILNFQDDYHDAL- 275

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                    +L  ++RST +IL   + + S  +                S R        
Sbjct: 276 -------TFKLVENYRSTGNILKAANSIISRNQRQIKKE--------LISHRSEGDPLTL 320

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L                           +  +    A ++   I +M           K+
Sbjct: 321 L---------------------------EAYNERNEAEKVGDHIRSM---------RMKQ 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + +   V  R    + ++  + R      +I               IKD +A  RFIL
Sbjct: 345 GYEFRSFAVFYRTNAQSRVLEDVMR----QSRIPYRIFGSVSFYKRREIKDAVAYLRFIL 400

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGIS-----KFQH 483
           ++ D  S + ++  P     +  I K+      E  ++YE I+K    G           
Sbjct: 401 NERDSESLLRIINFPPRKIGDVSIGKLKDFAEREGVSLYEAIRKAEEGGFQARLVTALTS 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
               I  L  IA+  + ++  + +           +    E     + L E L+      
Sbjct: 461 FSTVIESLKEIAENGTVYNVLSELFTLTSIPLLLQAENTPESLARHENLQELLSMARDFS 520

Query: 541 QNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++    SL + +  +             + N V +MTVH AKGLE PVVF+     ++F
Sbjct: 521 DHNPDAGSLGDFLENISLASD--YEETQDSDNYVSLMTVHAAKGLEFPVVFVTGLEERLF 578

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                +   +                                           YV +TRA
Sbjct: 579 PLHGQEPEELEEERRL------------------------------------FYVAVTRA 602

Query: 659 SDQLIICKHSNT 670
            +++ +    + 
Sbjct: 603 QEKIFLSWAQSR 614


>gi|294789337|ref|ZP_06754575.1| ATP-dependent DNA helicase Rep [Simonsiella muelleri ATCC 29453]
 gi|294482762|gb|EFG30451.1| ATP-dependent DNA helicase Rep [Simonsiella muelleri ATCC 29453]
          Length = 663

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/576 (17%), Positives = 186/576 (32%), Gaps = 121/576 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + + Y+   +    +DF+DLI     LL++      IR K    + ++L+DE QDT+
Sbjct: 161 TAQIYSRYQATLQHYQAVDFDDLIRLPAILLRENGE---IRLKWQNRLRYLLVDECQDTN 217

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ LT                  VGD+ QSIY++ GA+ + + R ++   +   
Sbjct: 218 ACQYELLKLLTGL----------EAKFTVVGDDDQSIYAWRGADMENLRRLQQDYPQ--- 264

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RSTA IL + ++V          +                     
Sbjct: 265 -----LKVIKLEQNYRSTARILKIANQVIGNNPKLFPKT--------------------- 298

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW  +     +               +         A  +   I+          N    
Sbjct: 299 LWSNLGEGDAA--------------RIMACRDEVHEAEFVVQQIAK---------NKLLY 335

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D  +L R      L     R      +I    +      D   IKD++A  R + 
Sbjct: 336 DANYADFAILYRGNHQARLFEDALRV----ARIPYQISGGQSFYDKAEIKDVLAYLRLLA 391

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYI------QKFANCGISKFQ 482
           +  DD +F+    +P     E  + K+     + E +++E           +       Q
Sbjct: 392 NPNDDPAFLRAATTPKRGIGETTLGKLNAYAQQHECSLFEASGSLNTLATLSTKSRESVQ 451

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVLDEFLNFT 536
             I  + +    AQ     +    +L   +     +                + +   + 
Sbjct: 452 QFIALLRDYQQRAQTDDAGETVQNLLDDIQYENYLLENHAENPKMAESRWKNVQDLCTWL 511

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            +  ++   +L EL   +        +      + V++ T+H +KGLE P V+LV     
Sbjct: 512 AK--KSEERNLVELTQLIALMTLLENKD--EEIDAVKLSTLHASKGLEYPFVYLVGCEEG 567

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H                                      +++   EE  RL+YVG+T
Sbjct: 568 LFPH-----------------------------------ADSVEEHGLEEERRLMYVGIT 592

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           RA  QL +                    + +   +D
Sbjct: 593 RAKQQLTMTHCKKRKRAGTWQYPEPSRFLDEMSSDD 628


>gi|160902562|ref|YP_001568143.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
 gi|160360206|gb|ABX31820.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
          Length = 1065

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 140/796 (17%), Positives = 276/796 (34%), Gaps = 75/796 (9%)

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            + DF+ ++    +  +       +  K   +  +I++DE QDT+ +Q E+   L      
Sbjct: 270  LYDFKAVLEKVVEEFENNPD---LLKKYQNKFKYIIVDEFQDTNYLQKEIFDKL------ 320

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII---ELPL 262
                H++    F VGD KQSIY F GA+            +  T A      +   +L  
Sbjct: 321  ----HTTDNYFFYVGDRKQSIYRFRGADVSV-------FSRSLTEAENSDEEVLLGKLTK 369

Query: 263  SFRSTADILTVVDKVFSIP---ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE----QVV 315
            + RS   I+   + +        +   + +     + + S +   +   ++       + 
Sbjct: 370  NRRSHQQIINFANHLSETSLFKRDNLQMPDIDPKLLENLSFQEEDISEPEIPPQETETIP 429

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRI---AYTISNMIGTDTIFSNGKK---- 368
            +  +      +       +     +  + LA  I   A  I  ++G +  F   K     
Sbjct: 430  TLSEDDTKRVKYILIEPTEENGLNNQENRLAIEIDTLAKVIKKLLGQEMDFKVRKNNKVY 489

Query: 369  ---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
               R I+ KDI VL    K+      + R     Y I           +   I+ + A  
Sbjct: 490  YERRKIEPKDIAVL---SKELKNTEKILRNTFFKYNIPFYIFGSKSFYNRPEIQAIFAAL 546

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
              I +  +D  FV  + S L   S  D+ K+        + +E  +   N          
Sbjct: 547  NSIQNPFNDYQFVRYMMSLLVGMSFQDLSKLVE--KSQGSFFETFENIKNEFPEDVVESY 604

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQ--N 542
            K + +   +  + +P      I+       +       EV I  + + +N         N
Sbjct: 605  KVLKKYKDLKYYLTPSSILKGIINDNNYFSKLALTNDPEVSISNIKKLINQAEEYNNMAN 664

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            S+S L   +                  N V++MT+H +KGLE P+V ++   + + + K+
Sbjct: 665  SFSELVRFLKNASNISEEEASIEDETSNSVKVMTIHKSKGLEFPIVLMIGLHNSISNTKN 724

Query: 603  IKKMHIMPSLNDDPGIP----IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                       +         I+    ++ ++ +    K+ +   + E NRL+YVG+TRA
Sbjct: 725  GSNAEFSIPNAEGNRYYILNNIYKESVENSDHWLLKWFKNNEFLDKTEANRLVYVGITRA 784

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             D L+       SNEK      ++  V +S   D            N  E +  E     
Sbjct: 785  KDLLL---PILVSNEKADTLNNFFLTVKNSDMIDIIQSDHIQQVQENTPEPLNQEGENSL 841

Query: 719  PENTPLEREETIKQL--MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
             ++ P +  + +  L           +      +++    L+ +        + +++ SD
Sbjct: 842  FKDIPQQNLKDLTNLSYKKYIAPTYIIKEIKTEELDLIEDLSGTITSPSTYFDPKNIFSD 901

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
             +   RG  +H  L          R     S+     K     +  + L  + +      
Sbjct: 902  QELIFRGSFLHSKL----------RSAQNISHIKNMIKNGELPQRFDELDIVKKAFTPNE 951

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                      +E  +  K+N  KK+ ++ G  D++ I   +I I +YK  +   ++ + I
Sbjct: 952  NKII-----KNEWRLMKKLNLGKKEYMLFGIPDKVIIENGDIEILDYK--YSELRDPKKI 1004

Query: 897  PYTHIAQLSIYEKILK 912
               +  Q+  Y  +L 
Sbjct: 1005 ND-YQFQILFYLYLLS 1019


>gi|260592504|ref|ZP_05857962.1| putative UvrD/REP helicase domain protein [Prevotella veroralis
            F0319]
 gi|260535550|gb|EEX18167.1| putative UvrD/REP helicase domain protein [Prevotella veroralis
            F0319]
          Length = 1098

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 142/875 (16%), Positives = 274/875 (31%), Gaps = 87/875 (9%)

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
                 K I T   +  S  L   LK  ++  +     + +  +    L+ L L   ++  
Sbjct: 291  AGKCPKEIKTIITDLASKSLCNDLKLLEEYRLNNWKEYQSCNLTLRHLSQLRLLHSISEA 350

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
             +E  K         ++ NT  LL        + ++  KI   + HI+IDE QDTS IQW
Sbjct: 351  VDELNKDMNRF----MLSNTQSLLSNLMKDSDTPFVFEKIGAYLKHIMIDEFQDTSTIQW 406

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
               + L  +     ++H+       VGD KQSIY +   + + +   ++          +
Sbjct: 407  NNFKKLLINCMSQGDSHN-----LIVGDVKQSIYRWRQGDWRLLNNIEKEFST------E 455

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
            + +I  L  ++RS  +I+   +  F++            +            G  +   +
Sbjct: 456  QLAIKPLNTNYRSEENIILFNNAFFTLAIEQSIKELQQDSI-----------GNFEQLTE 504

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
               +   Q               P ++    +   +   +  ++              + 
Sbjct: 505  AYKEIIQQPKKSNHKGYVSVKLFPSDNYEEDVLNELTNNVQQLLDLG----------YRQ 554

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            K I +LVR +     I    +       IS+V ++ F L   LA+  ++   R ++  +D
Sbjct: 555  KSITILVRTKGVIQDIVDTFQHHFGSA-ISIVSDEAFRLDASLAVNVIILALRLLVHPDD 613

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
             L+   +LK             +    +  E +            S +    K +  L  
Sbjct: 614  KLTASKLLK-------LYHQQVLKNSTNSNEILVHPGDNIFENLPSSYIEQFKQLPNL-- 664

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                 S  D     L    G ++   +        +  F +      +++ + + + I E
Sbjct: 665  -----SLIDLVDQ-LYEMFGLKELEGQ-----SAYVCAFYDTLNEYLRDNPADIDDFIEE 713

Query: 554  LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV----FSHKHIKKMHIM 609
             E+             + +RI+T+H +KGLE   V +     ++     +          
Sbjct: 714  WEKSLSQNTIQSDEV-DGIRIITIHKSKGLEYDNVLIPFCDWELEKTTGNTIWCNGKDKE 772

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
               N  P IPI   +      +  D  K        +   LLYV  TRAS  L I     
Sbjct: 773  DPFNQLPLIPIDFSKKSMMGTVFEDDYKEEHLQNTVDNMNLLYVAFTRASKNLFISGKRM 832

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
               + K  +    +                  +     +    E           E   +
Sbjct: 833  KDKKLKELESDPTNSNRSQIIQLITESLSSKLDGATLCDSKESEPLEFEFGTLSKETNNS 892

Query: 730  IKQLMDEQKIPKKLFSPIKNDI------NEPYILNPSTIDTKGKTNLE-SLLSDNQTFNR 782
             K + ++          I++ +        P     S          +      N+    
Sbjct: 893  TKPVDNQLLNKNPFSETIESKLIKIETFPYPAEFRQSNKSEDFIKGEDVDPSDANRYIKI 952

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            G I+H+L   I  L E   +  +     +            L   I   L N  + +  S
Sbjct: 953  GNILHQLFSTI--LTEEDIEPRLKDLEQQGVVYNDEVTSTELRNKIANALRNEKVKSWFS 1010

Query: 843  CDSYSEVSVSGKI--NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
                 E+     I     K+ ++   R D++      I I ++K               +
Sbjct: 1011 D--RWELFNECTIIEYDNKEGVVREHRPDRVMTDGNEIIIVDFKFGKP--------RTEY 1060

Query: 901  IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              Q+  Y ++L+    NK++   L YV   +V  +
Sbjct: 1061 HEQVKQYIELLQRM-GNKNIFAYLWYVMRNEVEEV 1094


>gi|145297194|ref|YP_001140035.1| ATP-dependent DNA helicase Rep [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142849966|gb|ABO88287.1| ATP-dependent DNA helicase Rep [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 670

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 99/638 (15%), Positives = 206/638 (32%), Gaps = 124/638 (19%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +   E++     L   + +  +    +       ++ +       L   L 
Sbjct: 111 TDQLALLKELTEAELDNDKDKLSALISQISNWKNDLILPARAMRIAQGPEE--VLMAQLY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y         LDF+DLI+    LLK  +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 ERYHRQMVAYNALDFDDLIVMPTLLLKSNEE---VRTRWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ +  +                VGD+ QSIYS+ GA+P+ ++                
Sbjct: 226 LVKQIVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLNEDFP--------S 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS   IL   + + +   +    +  S                V++    
Sbjct: 268 LKLIKLEQNYRSKGRILKCANILIANNPHVFDKALFSEL---------DYGVPVKVLFA- 317

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                     +    A RIA           +  +      + K
Sbjct: 318 -------------------------KNEEHEAERIAAE---------LMGHKFMNRTRFK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKD+MA  + +++ ++D
Sbjct: 344 DYAILYRGNHQSRIFEKAL----MTNRIPYRISGGTSFFSRTEIKDIMAYLKLLVNPDED 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKY 487
            +F+ ++  P        + K+        ++++    +            S  Q    +
Sbjct: 400 TAFLRVVNLPRREIGPTTLEKLGQYANQRGKSLFAASFELGLEQSLSGRGLSALQAFTNW 459

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN--- 539
           +  L   AQ  +P +    ++      +         +     +  +     +       
Sbjct: 460 LVRLGEQAQRGNPVEAVRDMIKEIHYEEWLYETSPSPKAAEMRMQNVSTLYRWITEMLEG 519

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E     +L ++++ L       +     + ++V++MT+H +KGLE P VF+V     + 
Sbjct: 520 DELEESMTLAQVVTRLTLRDMMERNEGEDDADQVQLMTLHASKGLEFPYVFMVGMEEGLL 579

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL YVG+TRA
Sbjct: 580 PHQTSID-----------------------------------EDNVEEERRLAYVGITRA 604

Query: 659 SDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
             +L   +CK      E    + + + +       +  
Sbjct: 605 QTELTFTLCKERRQYGESVRPEPSRFLLELPQDDLEWE 642


>gi|254229524|ref|ZP_04922938.1| exodeoxyribonuclease V, beta subunit [Vibrio sp. Ex25]
 gi|151937989|gb|EDN56833.1| exodeoxyribonuclease V, beta subunit [Vibrio sp. Ex25]
          Length = 1227

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 159/1021 (15%), Positives = 312/1021 (30%), Gaps = 167/1021 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMET-------GNPTIL-----KKAQTLQQASQT 59
            +     + LW  P   +SDI+ Y++ +  +       G+   L     KK   L+ A   
Sbjct: 196  TLAGEIRQLWGSPSALLSDISNYLTGAPLSLSVPAMKGSLADLHTENLKKIDELK-AQWR 254

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------ 105
            +  ++  +L+S   + ++   +K++ T                D  +KL+K         
Sbjct: 255  ESQDDFLTLISDSDINKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEK 314

Query: 106  ---------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                        +  + F    +           ++       AK +   L F+DL+   
Sbjct: 315  TPKGSAPQHAVFEAIETFLANPISLKAPLLAHAIEHCRVMLANAKNQKQWLSFDDLLTQ- 373

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                   D S  +  +I       +IDE QDT  +Q+ +   +          ++    L
Sbjct: 374  LSASIDTDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIY--------LNNPECGL 425

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++
Sbjct: 426  FMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVQAVNQ 475

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS- 335
            VF++P++      D    I     +       ++W         Q  P    W    D  
Sbjct: 476  VFALPDSPFIYDSD----IPFLPVKYSPNAEKRIWTM-----GGQKQPALTYWLQEADDK 526

Query: 336  -LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
             LP+    + +A   A  I  ++     G   + +  K++ +QA DI VLVR   +  +I
Sbjct: 527  PLPKGEYLTRMAEATASQIQTILTQAQQGQACLVNGEKQKAVQAGDIAVLVRTGSEGRMI 586

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                + L +    SV  ++R  +      +DL  L + +L+ E+D +    L S LF   
Sbjct: 587  K---QALADQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALD 643

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               +  +           E + + A     +++ +      L  +    S       +L 
Sbjct: 644  AASLDALNND--------EVVWENAVNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLE 695

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKR 563
                 Q          +  + E L        + +  L+ L   +              +
Sbjct: 696  EGASSQGENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAENGLGGSDDQIQ 755

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               +  N V+I+T+H +KGLE  +VFL                      ++         
Sbjct: 756  RLESERNLVQIVTIHKSKGLEYDLVFLPFV-------------FSYREASEAKYYDAAND 802

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
            ++          +K   K    E  RL+YV +TRA     I      +          + 
Sbjct: 803  RTVLDITGNDASMKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGVHR 862

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                    + +   I   +     +    +          LE +    Q        K+L
Sbjct: 863  SAIGYLIQNGQEGGINDLHQGLTQQQDELDCVVVADPPQQLEEKYVAPQEEIHDLSAKEL 922

Query: 744  FSPIKNDINEPYIL-------------------------NPSTIDTKGKTNLESLLSDNQ 778
             +PI  +                                +    +        S+ +  +
Sbjct: 923  QNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEADLLEPERSIFTFPR 982

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPM- 836
                G  +H L + I        +           ++    +    L   I  +L  P+ 
Sbjct: 983  GARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDTVLATPLD 1042

Query: 837  -----MTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISG 866
                 +          E+     I       +                         + G
Sbjct: 1043 GKSLLLNQKAPSQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGMLKG 1102

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKDSYPN 917
             ID +   Q   ++ ++K++H          E +      + +  Q  IY   L     +
Sbjct: 1103 FIDLVFEHQGKYYVLDWKSNHLGDDVTSYHGEALKSAMADHRYDLQYQIYALALHRFLRS 1162

Query: 918  K 918
            +
Sbjct: 1163 R 1163


>gi|260775078|ref|ZP_05883977.1| ATP-dependent DNA helicase Rep [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608995|gb|EEX35155.1| ATP-dependent DNA helicase Rep [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 672

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 100/686 (14%), Positives = 226/686 (32%), Gaps = 137/686 (19%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L++ L    +    
Sbjct: 98  ALGLKSGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRQLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +          +       L  +    Y++  K    LDF+DLI     LL+  +    +
Sbjct: 146 MLTPEQAKAYAQGEQQ--QLFAFCFDMYQKQMKAYNALDFDDLIALPVLLLRTNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ +  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNTSQYELVKLIVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    S 
Sbjct: 251 RGAKPQNLVLLGEDYP--------SLRLIKLEQNYRSTSRILRAANILIANNPHVYEKSL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S                               + ++       D           A R+
Sbjct: 303 FSEIP----------------------------DGEKLKVLLAKD-------EEHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                    T  + ++        +D  +L R    + LI           ++    +  
Sbjct: 328 ---------TGELIAHKFLNRTDYRDYAILYRGNHQSRLIEKSL----MQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++E
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFE 434

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               +   +++ ++   A+     +    ++              
Sbjct: 435 CSFEIGLEQHLSGRGLENLRRFSQWLVKIADQAERGDTVEAVRSLVRDINYEDWLYETSA 494

Query: 520 --RFGNEVIDVLDEFLNFTLR------NEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             +     +  + +  ++ +        +Q    +++E++  L       +     + + 
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNYDQEE-KTIKEVVQRLTLRDMMERGEEDDDSDA 553

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H +KGLE P V+L+ +   +  H+                              
Sbjct: 554 VQLMTLHASKGLEFPYVYLIGSEEGILPHQTSID-------------------------- 587

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                    +   EE  RL+YVG+TRA  +L            +  + T    + +   +
Sbjct: 588 ---------EDNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFD 638

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTH 717
           D   +  K   +  +          +
Sbjct: 639 DVEWEVNKKPQTQEERMAKGQAHIAN 664


>gi|146309527|ref|YP_001189992.1| DNA-dependent helicase II [Pseudomonas mendocina ymp]
 gi|145577728|gb|ABP87260.1| ATP-dependent DNA helicase UvrD [Pseudomonas mendocina ymp]
          Length = 727

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 117/640 (18%), Positives = 217/640 (33%), Gaps = 122/640 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T    A  L +A   +      + L+  F       Q+ +I + I +   D +    K  
Sbjct: 91  TFHGLAHRLLRAHWQE------AALTENFQILDSDDQQRLIKRVIRELGLDEQRWPAKQA 144

Query: 105 DEFI--KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             FI  +  + F    +       L   + +   YE A  +  V+DF +L++   DL + 
Sbjct: 145 QWFINGQKDEGFRPQHIQAGGDLFLATMRGIYEAYEAACARTGVIDFSELLLRALDLWRD 204

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
           +     +     +   HIL+DE QDT+ +Q+  +R L +             +L  VGD+
Sbjct: 205 KPG---LLEHYQRRFRHILVDEFQDTNAVQYAWLRLLAK----------GGDSLMVVGDD 251

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA  + + +                 +I L  ++RSTA IL   + + +   
Sbjct: 252 DQSIYGWRGARIENIQQFSSDFP--------DTQLIRLEQNYRSTAGILKAANALIANNN 303

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
              G                      +LW           + +  +  + F+   +    
Sbjct: 304 GRLGK---------------------ELW-------TDGGDGEPLALYAAFNEHDE---- 331

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR +  +I + +  D          ++  +I +L R    + ++           +I
Sbjct: 332 ---ARYVVESIEDALRKD---------GLKRSEIAILYRSNAQSRVLEEAL----LRERI 375

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRH 461
                      +   IK+ MA  R +  + +D +   ++  P     E  +  I    R 
Sbjct: 376 PYRIYGGQRFFERAEIKNAMAYLRLLDGRGNDAALERIVNVPARGIGEKTVESIREFARA 435

Query: 462 ETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--- 512
           +  +++E I++                  I+ I  L         H    +++       
Sbjct: 436 QDLSMWEAIRRMLAVKALPGRAAGALGGFIELIEGLAEKVMAMPLHQMTQVVIEQSGLLA 495

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNE 571
             +      G   ++ L+E ++     E +    L  L + L            + N + 
Sbjct: 496 YHEAEKGEKGQARVENLEELVSAARAFENDEDDELTPLQAFLTHASLEAGDTQAAENEDS 555

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +++MT+H+AKGLE P+VFLV     +F HK   +                          
Sbjct: 556 IQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEEPG----------------------- 592

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        EE  RL YVG+TRA  +L+I       
Sbjct: 593 -----------RLEEERRLAYVGITRAMQKLVISYAETRR 621


>gi|62185554|ref|YP_220339.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3]
 gi|62148621|emb|CAH64393.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3]
          Length = 637

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 95/550 (17%), Positives = 169/550 (30%), Gaps = 117/550 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +   LDF+DL+  T  L ++      +R +  +    +LIDE QDT+  Q
Sbjct: 166 IYKEYQQRLHEANALDFDDLLFLTVRLFQEFPE---VRKEYSELWKALLIDEYQDTNHAQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++ +++              + +FAVGD  QSIYS+ GA    +L  ++   +      
Sbjct: 223 YKMAQTIAG----------KHQNIFAVGDPDQSIYSWRGANIHNILNFEKDYPRAL---- 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RS  +IL   + +     +       S                     
Sbjct: 269 ----VLRLEDNYRSYGNILNAANALIQNNASRLKKDLRSVK------------------- 305

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +   +    D           A  +A  IS +              I 
Sbjct: 306 --------GPGEKIRVFLGKTDKEE--------AEFVADEISRLHRRSQ---------IP 340

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             DI +  R    +              +I               I+D++A  R   ++ 
Sbjct: 341 LSDICIFYRTNFQSRTFEDAL----LRRRIPYEILGGLSFYKRKEIQDILAFLRMFTAKS 396

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ--------KFANCGISKFQH 483
           D ++F   +  P        I  +          + E           K +       + 
Sbjct: 397 DVVAFDRTVNLPKRGLGPSTISSLIEYALTNNLPILEACNNVLQTQEVKLSKKQQEGLRE 456

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQ 541
            +    +L H       ++F    +      Q          +    LDE  + T   EQ
Sbjct: 457 YLSIFQQLEHAYATLPLNEFVVATIRITGYFQVLKEDPDTFEDRKSNLDELASKTFEWEQ 516

Query: 542 NSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +    L+  + +L     T      A  + V +MT+H  KGLE  + F+V     +F H
Sbjct: 517 QNTDGTLENFLDDLALKSSTDDTELIA--DRVNLMTIHNGKGLEFRIAFVVGLEENLFPH 574

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            + K  +                                     EE  RL YVG+TRA D
Sbjct: 575 ANSKSSY----------------------------------ENLEEERRLCYVGITRAQD 600

Query: 661 QLIICKHSNT 670
            L +      
Sbjct: 601 LLYLTAAQTR 610


>gi|190149550|ref|YP_001968075.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307245094|ref|ZP_07527187.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307262870|ref|ZP_07544494.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189914681|gb|ACE60933.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|306853983|gb|EFM86195.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306871775|gb|EFN03495.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 672

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/675 (16%), Positives = 225/675 (33%), Gaps = 131/675 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +    +     F       L +   P+     +++ K    L   +   +++   +    
Sbjct: 97  KLLGFKSGMTLFDEHDQLALLKHLLPENAAEDKDLLKA---LISTISNWKNDL--LSPEM 151

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              ++         +  +    Y+   K    LDF+DLI+    L ++   +     +  
Sbjct: 152 VLTRVRDERE---RVFSHFYRLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKT---RWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q+++++L+DE QDT+  Q+E+I+ L                   VGD+ QSIYS+ GA+P
Sbjct: 206 QKVHYLLVDEYQDTNTSQYELIKLLVG----------GEANFTVVGDDDQSIYSWRGAKP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + + R +               +I+L  ++RS+  IL   + +    ++       S  +
Sbjct: 256 ENMQRLREDF---------DLKVIKLEQNYRSSQRILHCANILIDNNDHIFQKRLFSNLS 306

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              + +                                   + +  +    A RI     
Sbjct: 307 EGEKLN-----------------------------------VIEAKNEEHEAERIV---- 327

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                  + ++      + KD  +L R    + L+      L    +I    +       
Sbjct: 328 -----GELIAHRFSNKTKYKDYAILYRGNHQSRLLEK----LLMQNRIPYKISGGTSFFA 378

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY---- 469
              IKD+MA  R +++Q+DD +F+ ++ +P        + K+      +  +++E     
Sbjct: 379 RAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGAVTLEKLGLLANEKQVSLFEAIFDF 438

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
             IQ+         Q   ++I E+   A+   P +    +L   +            +  
Sbjct: 439 ELIQRLTPKPYQALQDFARWIVEIADQAERSDPIEAVKDLLAKIQYEAYLYETATSPKAA 498

Query: 523 NEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 +     +        E     +L ++++ L       +       ++V++MT+H
Sbjct: 499 EMQSRNVQTLFEWVQGMLEGDEIEEPMTLVQVVNRLTLRDMLERGEDDDEADQVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+                                     
Sbjct: 559 ASKGLEFPHVFLVGMEEGILPHQTSLD--------------------------------- 585

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +   EE  RL YVG+TRA   L   +CK      E    + + + +           +
Sbjct: 586 --EDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKPEPSRFLLELPQDDLVWESE 643

Query: 697 KIKLTNSINKDEWIA 711
           K K+T     ++  A
Sbjct: 644 KPKMTEEQKVEKTSA 658


>gi|316933213|ref|YP_004108195.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
 gi|315600927|gb|ADU43462.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
          Length = 863

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 103/602 (17%), Positives = 177/602 (29%), Gaps = 163/602 (27%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+E  K     DF DL++    L ++      +  +       IL+DE QDT++ Q
Sbjct: 204 LYAQYQERLKILNAADFGDLLLENIRLFREHPD---VLRQYQNRFKFILVDEYQDTNVAQ 260

Query: 193 WEVIRSLTEDFFVGKNTHS----------------------------------------- 211
           +  +R L++     + T                                           
Sbjct: 261 YLWLRLLSQTPATPRPTRDVETLHTSPHRGEVGERSSPGEGRRSSESAVPPPPTPLPGGE 320

Query: 212 ------------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                        P+ +  VGD+ QSIY + GAE   +LR                 +I 
Sbjct: 321 REQAAVVATHDTPPKNICCVGDDDQSIYGWRGAEVDNILRFDHDFP--------GAKVIR 372

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RST  IL     + +  E   G +                               
Sbjct: 373 LERNYRSTGHILAAASHLIAHNEGRLGKTL----------------------------RT 404

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
              + +  + T  +DS  +       AR I   I  +                  +I +L
Sbjct: 405 EDVDGEMVTVTGAWDSEEE-------ARAIGEEIEQLQRQGHAL----------NEIAIL 447

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           VR              L     +           +   I+D +A  R I S  DDL+F  
Sbjct: 448 VRASFQMREFEDRFVTL----GLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLAFER 503

Query: 440 MLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELI 492
           ++  P     +  +  +    R     ++E  +      +         + VI+      
Sbjct: 504 IVNVPKRGLGDATVQMLHDHARKRRMPLFEAARMVIDTDELKPKARGSLRGVIENFERWQ 563

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQE 549
                    +   ++L      + +      +     + L E +      E         
Sbjct: 564 VQRDALPHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFEN-------- 615

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L   LE     + R   A+ + V +MT+H+AKGLE   VFL      +F H+        
Sbjct: 616 LQGFLEHISLVMDREGGADEDAVSVMTLHSAKGLEFETVFLPGWEEGLFPHQR------- 668

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                     +    ++  EE  RL +VG+TRA  +  +   +N
Sbjct: 669 -------------------------ALDEQGRAGLEEERRLAHVGITRARKRAKLYFATN 703

Query: 670 TS 671
             
Sbjct: 704 RR 705


>gi|78484557|ref|YP_390482.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2]
 gi|78362843|gb|ABB40808.1| ATP-dependent DNA helicase Rep [Thiomicrospira crunogena XCL-2]
          Length = 677

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 102/619 (16%), Positives = 202/619 (32%), Gaps = 128/619 (20%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T      K ++ ++   +  +L        +            +M +           L 
Sbjct: 112 TDTKQILKELMKKQQLSE-EELDGVQWDISNWKNAHISPEKALEMAEDN--LQQARAILY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
            +Y++       +DF+DLI     L  +      I  K   ++ ++L+DE QDT+  Q+E
Sbjct: 169 DYYQKQLHAYNSVDFDDLIGLPVRLFNENP---QILDKWQNKVRYLLVDEYQDTNAAQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIY++ GA+P+ +   K+            
Sbjct: 226 LVKQLVG----------VRAKFTVVGDDDQSIYAWRGAQPENLELLKKDFPN-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LEVIKLEQNYRSSNRILQAANTLIANNPHVFEKRLWS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   S  +  A R+   I           +  K   Q K
Sbjct: 305 ------------EMGMGDMLRVLACSDENHEAERVISEI---------IVHKFKHRTQFK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + L     R       I    +      D   IKD+M+  + I++ +DD
Sbjct: 344 DYAILYRGNFQSRLFERALRE----QNIPYKLSGGQSFFDKAEIKDVMSYLKLIVNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKY 487
            +F+ ++ +P        + K+         ++++  Q+       +   + + QH    
Sbjct: 400 AAFLRIVNTPRREIGASTLEKLATYATKRGVSLFDATQELGLSTVLSEKALQRVQHFGGL 459

Query: 488 IHELIHIAQFCSPHD---FFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN 539
           +      A   +  +   F   ++   +            R   + I+ + + L +  R 
Sbjct: 460 LLSWAQEADALAGTEVTSFVRQLIEKLEYDNWLHETSNTPRAAEKRIENVRDLLLWIERI 519

Query: 540 ------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 E      L+++++ +       +    +  N V +MT+H +KGLE P VFL+  
Sbjct: 520 IDKALNEDGDELRLEKIVAHMTLMDLMERNEEDSEPNMVTLMTLHASKGLEFPHVFLIGM 579

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             ++  H                                    ++++    EE  RL YV
Sbjct: 580 EEELLPH-----------------------------------KQNMESPGLEEERRLAYV 604

Query: 654 GMTRASDQLIICKHSNTSN 672
           G+TRA   L +        
Sbjct: 605 GITRAKRSLTMTYAKKRKK 623


>gi|330825224|ref|YP_004388527.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329310596|gb|AEB85011.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 1095

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 144/928 (15%), Positives = 297/928 (32%), Gaps = 96/928 (10%)

Query: 21   WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
            W L       + +  + ++    P+   K + L  A Q    +   + L     T+    
Sbjct: 246  WLLRRAAGRAMLEDAARALMPLAPSFAAKGEELMAALQAGDWQGVLAAL----FTKDGEG 301

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
                  +          + +  +QDE   +RD    +  +        L++ L   +   
Sbjct: 302  TPRAFGKS-------CPQAVTVAQDEAQTLRDACRQHAAWLHQQRMARLSRRLIECFGAV 354

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            K+++  +D  D+      LL    +S W++ ++D  + H+L+DE QDT+ +QW+ + +  
Sbjct: 355  KREHGWVDMNDVERTALTLLSDPVLSGWVQERLDARVRHLLVDEFQDTNPLQWQALHAWL 414

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
              +         P ++F VGD KQSIY F  AEP+     +   ++              
Sbjct: 415  AGYAGAGGGQH-PPSVFIVGDPKQSIYRFRRAEPQVFKAAQAFVREALGGDLLAC----- 468

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              + R+   ++ VV+      +  Q        T           G +     +      
Sbjct: 469  DHTRRNAQGVIGVVNAAMQAAQAQQEYEGFRAHTTE-----SQDAGRLLRLPPIARTDAR 523

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                      ++ DSL +    +         ++         +      + A +I+VL 
Sbjct: 524  VGGGGAADPLAWRDSLNEPRHEAEE----TLRMAESAQAAQWVAAQLAAGLPASEIMVLA 579

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R+R+    +    R L     I  V  ++  L     ++DL+AL   ++S   DLS   +
Sbjct: 580  RQRERLARMEEALRAL----HIPCVQPEKADLAQAPEVQDLVALLDALVSPAHDLSLARV 635

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI---SKFQHVIKYIHELIHIAQF 497
            LKSPLF   +  + ++   R +   V+                 + +   +         
Sbjct: 636  LKSPLFGADDALLTELALLRRQERHVHLSWFDLLQKQELLALDCRAIAANLSLYKEWVDS 695

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISE 553
              PHD    I        +F +             L   L   L+ +   Y +    +  
Sbjct: 696  LPPHDALQAIYAHGDVLARFAASAPAPQRAGVLANLRALLGAALQQDGGRYLTPYAFVRA 755

Query: 554  LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
            L +    I     A+   VR++TVH AKGLE+  V L+DT ++  S + +  +   P   
Sbjct: 756  LRKGG--IAAPARADAQAVRLLTVHGAKGLEAHSVLLLDTDARPKSAETMAVLVDWPGEE 813

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              P   I++    S        +   +   Q E    LYV +TRA   L +         
Sbjct: 814  PLPRRFIFLASESSPPPSAEGAMAAERAERQREALNTLYVAVTRAKRCLALSCVQ----S 869

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
              +N  +W+  +      D          ++   +     ++       P      +   
Sbjct: 870  GSANPGSWWARLAPLMQQDAD----PQAGAMGAQDAGDGAFTLLELPRLPAAPGLPVAAP 925

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                                                      D+    +G  +H LL+ +
Sbjct: 926  -------------------------------------RQPAQDSLASRQGQAMHALLEQV 948

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                    +     +  +       +    L  +         +       ++ E  +  
Sbjct: 949  GVAGLPLAEARARGWGQERLAQLAREFALPLPAARAAARMAQAILNGAGAWAWDEAQLEL 1008

Query: 854  KINCPKKDIIISG-RIDQIS-----ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
             +N         G R+D++            ++ +YK+     ++ + +      QL  Y
Sbjct: 1009 AVNEAPLTHQGQGLRLDRLVCLRERRGGARWWVLDYKSAAQPERQGDLVA-----QLQRY 1063

Query: 908  EKILKDSYPNKSLVCLLIYVSEPKVFII 935
             + ++   P +++    +   + ++  +
Sbjct: 1064 REAVRAQVPGEAVGAAFL-SGDGRLVEL 1090


>gi|328474312|gb|EGF45117.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus
            10329]
          Length = 1227

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 157/1019 (15%), Positives = 311/1019 (30%), Gaps = 163/1019 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMET-------GNPTIL-----KKAQTLQQASQT 59
            +     + LW  P   +SDI+ Y++ +  +       G+   L     KK   L+ A   
Sbjct: 196  TLAGEIRQLWSSPSALLSDISNYLTGAPLSLSVPAMKGSLADLHTENLKKIDELK-AQWR 254

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------ 105
            +  ++ F+L+S   + ++   +K++ T                D  +KL+K         
Sbjct: 255  ESQDDFFTLISDSDINKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEK 314

Query: 106  ---------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                        +  + F    +           ++        K +   L F+DL+   
Sbjct: 315  TPKGSAPQHAVFEAIETFLANPISLKAPLLAHAIEHCRVMLANVKNQKQWLSFDDLLTQ- 373

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                   D S  +  +I       +IDE QDT  +Q+ +   +          ++    L
Sbjct: 374  LSASIDTDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIY--------LNNPECGL 425

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++
Sbjct: 426  FMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVQAVNQ 475

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
            VF++P++      D    I     +       ++W     +  +     QE+       L
Sbjct: 476  VFALPDSPFIYDSD----IPFLPVKYSPNAEKRIWTMGGQKQPALTYWLQEANDKP---L 528

Query: 337  PQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
            P+    + +A   A  I  ++     G   + +  K++ +QA DI VLVR   +  +I  
Sbjct: 529  PKGEYLTRMAEATASQIQTILTQAQQGQACLVNGEKQKAVQAGDIAVLVRTGSEGRMIK- 587

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
              + L +    SV  ++R  +      +DL  L + +L+ E+D +    L S LF     
Sbjct: 588  --QALADQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALDAA 645

Query: 452  DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
             +  +           E + + A     +++ +      L  +    S       +L   
Sbjct: 646  SLDALNND--------EVVWENAVNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLEEG 697

Query: 512  KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAH 565
               Q          +  + E L        + +  L+ L   +              +  
Sbjct: 698  ASSQGENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAENGLGGSDDQIQRL 757

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             +  N V+I+T+H +KGLE  +VFL                      ++         ++
Sbjct: 758  ESERNLVQIVTIHKSKGLEYDLVFLPFV-------------FSYREASEAKYYDAASDRT 804

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                      +K   K    E  RL+YV +TRA     I      +          +   
Sbjct: 805  VLDITGNDASMKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGVHRSA 864

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                  + +   I         +    +          LE +    Q        K+L +
Sbjct: 865  IGYLIQNGQEGGINDLYQGLTKQQDELDCVVVADPPQQLEEKYVAPQEEIYDLSAKELQN 924

Query: 746  PIKNDINEPYIL-------------------------NPSTIDTKGKTNLESLLSDNQTF 780
            PI  +                                +    +        S+ +  +  
Sbjct: 925  PIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEADLVEPERSIFTFPRGA 984

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA-KLWPAKEYKNLLLSITRLLENPM--- 836
              G  +H L + I        +            +    +    L   I  +L  P+   
Sbjct: 985  RPGTFLHSLFEEIEFTQPATTEENTQIILGLMENEQLDEEWLPILQQLIDTVLATPLDGK 1044

Query: 837  ---MTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRI 868
               +          E+     I       +                         + G I
Sbjct: 1045 SLLLNQKAPSQRLVEMEFLLPIEVLSAPALNRIIQRHDPLSAKAGDLGFQTVQGMLKGFI 1104

Query: 869  DQISISQQNIFIFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKDSYPNK 918
            D +   Q   ++ ++K++H          E +      + +  Q  IY   L     ++
Sbjct: 1105 DLVFEHQGKYYVLDWKSNHLGDDVTSYHGEALKSAMADHRYDLQYQIYALALHRFLRSR 1163


>gi|304309876|ref|YP_003809474.1| ATP-dependent DNA helicase participating in chromosome replication
           [gamma proteobacterium HdN1]
 gi|301795609|emb|CBL43808.1| ATP-dependent DNA helicase participating in chromosome replication
           [gamma proteobacterium HdN1]
          Length = 668

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/620 (15%), Positives = 211/620 (34%), Gaps = 122/620 (19%)

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
           T    +    L+ K+ + +++ +      +     +   A+      + + Y+   +   
Sbjct: 126 TAVAGEDVDYLRNKISQWKNDLVTPSQAQSHAAGEEEMRAAH-----VYSAYDRCLRAYN 180

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            +DF+DLI     L +  +    +R +   +I+++L+DE QDT+  Q+ ++R L      
Sbjct: 181 AVDFDDLISLPTLLFRDNEE---VRERWQHKIHYLLVDEYQDTNTSQYLLVRLLVG---- 233

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                        VGD+ QSIY++ GA P+ +++                 +++L  ++R
Sbjct: 234 ------RRARFTVVGDDDQSIYAWRGARPENLVQLAEDYPA--------LKVVKLEQNYR 279

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           ST  IL   + V     +       S                                 +
Sbjct: 280 STQRILKAANAVIDNNPHVFTKQLWSEH----------------------------GFGE 311

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
           Q       +   +       A R+A  I              ++    KD  VL R    
Sbjct: 312 QIRIIRCLNEESE-------ADRVAMEI---------MHQKMQKGRDFKDFAVLYRGNFQ 355

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
           +  +    +     Y+I    +          IKD+MA  R +++ +DD +F+ ++ +P 
Sbjct: 356 SRTLEIKLQA----YQIPYKVSGGTSFFSRSEIKDVMAYLRLVINPDDDNAFLRIINTPR 411

Query: 446 FNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFC 498
                  + K+    +     ++    +           +   Q   +++ E     Q  
Sbjct: 412 REIGPSTLEKLAGYAQQRGVGLFAACDEMGLEQTLTGRPLQNLQRFSRWLAETTERIQRT 471

Query: 499 SPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELIS 552
                   +L     +   +     ++   + ++ +++ +    R   +     +  +I 
Sbjct: 472 DAIPAIQQMLRDIDYQAWLLEQAPSAKAAEKRMENVNQLVESMERMLGKQEEEDIAAVIG 531

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           +L       +R      ++V++MT+H +KGLE P VF++    ++  H            
Sbjct: 532 KLILIDLLEQRDEEDASDKVQLMTLHASKGLEWPYVFIMGLEEELLPH------------ 579

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                     +++ T EE  RL+YVG+TRA  +L +   +    
Sbjct: 580 -----------------------RNAIEEDTIEEERRLMYVGITRAQRELTLSLTAKRKQ 616

Query: 673 EKKSNQRTWYDMVYDSFHND 692
             +  +      + +   +D
Sbjct: 617 YGEEFEPAPSRFLDELPTDD 636


>gi|307249494|ref|ZP_07531482.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858487|gb|EFM90555.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 672

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/675 (16%), Positives = 225/675 (33%), Gaps = 131/675 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +    +     F       L +   P+     +++ K    L   +   +++   +    
Sbjct: 97  KLLGFKSGMTLFDEHDQLALLKHLLPENAAEDKDLLKA---LISTISNWKNDL--LSPEM 151

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              ++         +  +    Y+   K    LDF+DLI+    L ++   +     +  
Sbjct: 152 VLTRVRDERE---RVFSHFYRLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKT---RWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q+++++L+DE QDT+  Q+E+I+ L                   VGD+ QSIYS+ GA+P
Sbjct: 206 QKVHYLLVDEYQDTNTSQYELIKLLVG----------GEANFTVVGDDDQSIYSWRGAKP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + + R +               +I+L  ++RS+  IL   + +    ++       S  +
Sbjct: 256 ENMQRLREDF---------DLKVIKLEQNYRSSQRILHCANILIDNNDHIFQKRLFSNLS 306

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              + +                                   + +  +    A RI     
Sbjct: 307 EGEKLN-----------------------------------VIEAKNEEHEAERIV---- 327

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                  + ++      + KD  +L R    + L+      L    +I    +       
Sbjct: 328 -----GELIAHRFSNKTKYKDYAILYRGNHQSRLLEK----LLIQNRIPYKISGGTSFFA 378

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY---- 469
              IKD+MA  R +++Q+DD +F+ ++ +P        + K+      +  +++E     
Sbjct: 379 RAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGAVTLEKLGLLANEKQVSLFEAIFDF 438

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
             IQ+         Q   ++I E+   A+   P +    +L   +            +  
Sbjct: 439 ELIQRLTPKPYQALQDFARWIVEIADQAERSDPIEAVKDLLAKIQYEAYLYETATSPKAA 498

Query: 523 NEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 +     +        E     +L ++++ L       +       ++V++MT+H
Sbjct: 499 EMQSRNVQTLFEWVQGMLEGDEIEEPMTLVQVVNRLTLRDMLERGEDDDEADQVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+                                     
Sbjct: 559 ASKGLEFPHVFLVGMEEGILPHQTSLD--------------------------------- 585

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +   EE  RL YVG+TRA   L   +CK      E    + + + +           +
Sbjct: 586 --EDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKPEPSRFLLELPQDDLVWESE 643

Query: 697 KIKLTNSINKDEWIA 711
           K K+T     ++  A
Sbjct: 644 KPKMTEEQKVEKTSA 658


>gi|297622271|ref|YP_003703705.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
 gi|297163451|gb|ADI13162.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
          Length = 924

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 139/951 (14%), Positives = 277/951 (29%), Gaps = 108/951 (11%)

Query: 9   LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQCIEERF 66
             E      +    L    ++ I+ +++ ++    P +        L +       EE  
Sbjct: 69  PPEHRPRFEEAALELSGATLTTIHGFMAAALRLNAPLLGLDPDFGALGEWEARALFEEEL 128

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           + L   FL +      +   Q +   +  L  +L  ++    + R         +     
Sbjct: 129 ATLR--FLARAPEHALHAPLQRLAGGAEALCTQLFAARALAERFR---LAAAASERERDL 183

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L L +   A Y        +L   ++     +L +  +  A    ++      +L+DE Q
Sbjct: 184 LALFEAAYARYRTRLGAL-LLPPPEIERRALELTRHPEAMA----RLRARYQLLLVDEFQ 238

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q     +L           +S  TL  VGD KQ+IY F  A+ +      R  + 
Sbjct: 239 DVNPVQGRFFEAL----------EASGLTLEVVGDPKQAIYGFRHADVEVFRGALRRARA 288

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ-GLSEDSTTTIRHRSSRIGQV 305
           R   A        L  + R    +   ++ +         G S      +     +  + 
Sbjct: 289 RGELAPP------LTETRRHAQVVTRFLNHLTRAFAERGWGFSAAEAPEVTCAGPQAAER 342

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
           G V++          +                     +  AR +A  ++ ++        
Sbjct: 343 GRVEIHWVTGEAAMGEL-------------------RAYEARVLAGRVAALLER------ 377

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                   +++ VL R       +    R L     +           + L I+DL    
Sbjct: 378 -----YAPREVAVLARSYAGLAQMEGALRAL----GVPATMLQGRGYFERLEIRDLYHAL 428

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           +  L     LS    L+ P    S  D+ ++        T+                 V 
Sbjct: 429 KVGLDP-QGLSLAAWLRGPFAGLSLGDVERVVLAEAPLATLERL-----------APEVS 476

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           + +  L  + +         L+     G ++++        + +D  L     +      
Sbjct: 477 RRLERLREVVRRGPVEALKLLVRAPLIGERRYVDFLEPRARENVDALLFAVAAHPPPDVG 536

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L E +  L +           + + V ++TVH AKGLE PVV L D G           
Sbjct: 537 ALLENLRRLSRQ--EDAGDVPQSGDGVSLLTVHRAKGLEWPVVALFDLGRFDTPRAAALY 594

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           +          G           +   ++L    +    EE  RLLYV  +RA D L++ 
Sbjct: 595 VAPGSGEVALEG-----------SGAFAELEAAARARDAEESYRLLYVAASRARDVLLVS 643

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                   +       +     +       +     + + +                   
Sbjct: 644 GSVKGGRPRG------WAAALAALGFGPEARPWARGDFVLQRWPAQRVAPAAAAVADERA 697

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
                       + P+                + S          E      +    G +
Sbjct: 698 LPAAPWTTRRFLEPPQPPLCSPSAAATLGDEGDESCEPLPITDPDEGEPLPGRARAVGTL 757

Query: 786 IH-KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE--NPMMTTAMS 842
           +H  + Q          +N       +    + A E   +L  +  LL     ++  A+ 
Sbjct: 758 VHYAVSQNWSARSATHLRNLEAQ---EVMFAFSAAERAEILAEVAELLGRYEALLGAALP 814

Query: 843 CDSYSEVSV-SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
                E          P    +  G ID++  +    ++ +YKT   V       P ++ 
Sbjct: 815 ALEAREADFAELPFALPFAGTVWQGVIDRLYCAGGRWYLDDYKTDRTV------RPESYY 868

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
            QL +Y +        +     L+Y+   +V  +P+  L  A   +  + P
Sbjct: 869 RQLGLYARAAWAVRGLRP-EVRLVYLRAQQVVRVPEEALEGALEALLARAP 918


>gi|146342459|ref|YP_001207507.1| DNA helicase II [Bradyrhizobium sp. ORS278]
 gi|146195265|emb|CAL79290.1| DNA helicase II [Bradyrhizobium sp. ORS278]
          Length = 865

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 117/692 (16%), Positives = 206/692 (29%), Gaps = 165/692 (23%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKS- 103
           + A+ L QA +       F  ++   L         + N    +++ +   LK+ L+   
Sbjct: 103 RLAEMLGQAVEGMPWLGTFHSIAGRILRSHAELVQLKSNFTVLDVDDQIRLLKQLLQAEN 162

Query: 104 -----------QDEFIKIRDRFNTYKMFKSTLASLTL---AKYLNAHYEEAKKKNCVLDF 149
                       +     ++R        S  A++        L A Y+E  K     DF
Sbjct: 163 IDDKRWPARMLANLIDGWKNRGLAPAQVPSGEAAVFANGKGGKLYASYQERLKILNAADF 222

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV---- 205
            DL++    L ++      +  +       IL+DE QDT++ Q+  +R L++        
Sbjct: 223 GDLLLENIRLFRENPD---VLRQYQGRFKFILVDEYQDTNVAQYLWLRLLSQAPSSSRAV 279

Query: 206 ---------------------------------------GKNTHSSPRTLFAVGDEKQSI 226
                                                     +  +P+ +  VGD+ QSI
Sbjct: 280 TPSSVIPGRLEEASPESRAEDPQLRDSGFAPDGALRNDDAAQSAPAPKNICCVGDDDQSI 339

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GAE   +LR +               +I L  ++RST  IL     + +  E   G
Sbjct: 340 YGWRGAEVDNILRFEHDFP--------GAKVIRLERNYRSTGHILAAASHLITHNEGRLG 391

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +                                    ++ + T  +DS  +       A
Sbjct: 392 KTLH----------------------------TEDVEGEKVTVTGAWDSEEE-------A 416

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R I   I  +                  DI +LVR              L     +    
Sbjct: 417 RGIGEEIEELQRKGE----------HLNDIAILVRASYQMREFEDRFVTL----GLPYRV 462

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                  +   I+D +A  R I S  DDL+F  ++  P     +  +  +    R     
Sbjct: 463 IGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNVPKRGLGDATVQLLHDHARKRRIP 522

Query: 466 VYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           ++E  +  A     K       + +I          +     +   ++L      + +  
Sbjct: 523 LFEAARAVAETDELKPKARGSLRGLILQFERWRAQREVTPHTELAEIVLDESGYTEMWQK 582

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
               +    LD         E+      + L   LE     + R   A+   V +MT+H+
Sbjct: 583 DRSADAAGRLDNLKELIRSMEE-----FENLHGFLEHISLVMDREGGADEEAVSLMTLHS 637

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFL      +F  +                                      
Sbjct: 638 AKGLEFDNVFLPGWEEGLFPSQRTLD--------------------------------EQ 665

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            ++  EE  RL +VG+TRA  +  I   +N  
Sbjct: 666 GRAGLEEERRLAHVGLTRARRRAKIYFATNRR 697


>gi|32033668|ref|ZP_00133979.1| COG0210: Superfamily I DNA and RNA helicases [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207767|ref|YP_001052992.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae L20]
 gi|126096559|gb|ABN73387.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
          Length = 672

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 110/675 (16%), Positives = 224/675 (33%), Gaps = 131/675 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +    +     F       L +   P+     +++ K    L   +   +++   +    
Sbjct: 97  KLLGFKSGMTLFDEHDQLALLKHLLPENAAEDKDLLKA---LISTISNWKNDL--LSPEM 151

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              ++         +  +    Y+   K    LDF+DLI+    L ++   +     +  
Sbjct: 152 VLTRVRDERE---RVFSHFYQLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKT---RWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q++ ++L+DE QDT+  Q+E+I+ L  +                VGD+ QSIYS+ GA+P
Sbjct: 206 QKVRYLLVDEYQDTNTSQYELIKLLVGN----------EANFTVVGDDDQSIYSWRGAKP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + + R +               +I+L  ++RS+  IL   + +    ++       S   
Sbjct: 256 ENMQRLREDF---------DLKVIKLEQNYRSSRRILHCANILIDNNDHIFQKRLFSNLG 306

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              + +                                   + +  +    A RI     
Sbjct: 307 EGEKLN-----------------------------------VIEAKNEEHEAERIV---- 327

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                  + ++      + KD  +L R    + L+      L    +I    +       
Sbjct: 328 -----GELIAHRFSNKTKYKDYAILYRGNHQSRLLEK----LLMQNRIPYKISGGTSFFA 378

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY---- 469
              IKD+MA  R +++Q+DD +F+ ++ +P        + K+      +  +++E     
Sbjct: 379 RAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGAVTLEKLGLLANEKQVSLFEAIFDF 438

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
             IQ+         Q   ++I E+   A+   P +    +L   +            +  
Sbjct: 439 ELIQRLTPKPYQALQDFARWIVEIADQAERSDPIEAVKDLLAKIQYEAYLYETATSPKAA 498

Query: 523 NEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 +     +        E     +L ++++ L       +       ++V++MT+H
Sbjct: 499 EMQSRNVQTLFEWVQGMLEGDEIEEPMTLVQVVNRLTLRDMLERGEDDDEADQVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+                                     
Sbjct: 559 ASKGLEFPHVFLVGMEEGILPHQTSLD--------------------------------- 585

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +   EE  RL YVG+TRA   L   +CK      E    + + + +           +
Sbjct: 586 --EDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKPEPSRFLLELPQDDLVWESE 643

Query: 697 KIKLTNSINKDEWIA 711
           K K+T     ++  A
Sbjct: 644 KPKMTEEQKVEKTSA 658


>gi|145300876|ref|YP_001143717.1| exodeoxyribonuclease V, beta subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
 gi|142853648|gb|ABO91969.1| exodeoxyribonuclease V, beta subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
          Length = 1206

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 141/1020 (13%), Positives = 290/1020 (28%), Gaps = 169/1020 (16%)

Query: 10   NESYELIYKDLWPLPY---------FQVSDINKYVSLSMETGNPTILKKAQTLQQ----A 56
            +++     + LWP P             S++    +L  ET           ++      
Sbjct: 183  DKTLASSVRALWPSPAALLREMSSWLDNSELEILPALGDETLAARHQAAMARIEAVKNGW 242

Query: 57   SQTQCIEERFSLLSSFFLTQK---------FTPQKNI-----ITQEINKKSPDLKEKLKK 102
                    R +       T K             ++      + +++ +   +  E    
Sbjct: 243  LAQGDEIRRQTEGQIKLYTGKNYEGWLAKIGDWAQDPTSGYTLPKDLERFGQEALEAKLS 302

Query: 103  SQDEFIKI-----RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
                   +      D     +     L     A+ + +  + +K++   L F+DL+ + +
Sbjct: 303  KGKALPTLPLFSEIDELLASRPGIRDLILQRAARVVRSRMQASKRQAHQLSFDDLLKDLD 362

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
              L    +   +  +I       +IDE QDT   Q+ +   L                L 
Sbjct: 363  GAL-GSSLGERLCDRIRATYRVAMIDEFQDTDPQQYRIFHRLYGG--------HKDTALL 413

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             +GD KQ+IY F GA+    ++ +R      T          L  ++RS++ ++  V+ +
Sbjct: 414  MIGDPKQAIYGFRGADIFTYIQARRNVSAHYT----------LGRNWRSSSALVGAVNGL 463

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL- 336
            F   ++      D    I              +        D    P    W        
Sbjct: 464  FERAKDPFIYEAD----IPFLPVEAQGKSKALVL-------DGATAPVLHCWQLAGQPTF 512

Query: 337  PQESSASILARRIAYTISNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +    S +AR  A  I  ++       +    + ++A DI VLVR   +  L+      
Sbjct: 513  NRGDYQSKMARATAAEIHRLLTLAREGKAQIGDQAVKAGDIAVLVRTGAEGKLVQQELAR 572

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            L      SV  ++R  + + +  ++++ +     +  ++ S    L + LF+     +  
Sbjct: 573  L---AIASVYLSNRESVLEQVEAREILLILHACQNPSEERSLRAALATGLFDLDAKALDA 629

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            + +     E+  +   ++        + V+  +  L+H           + +L +  G +
Sbjct: 630  LASDERAWESAVQEFMEYRKIWHR--RGVLAMLRALLHRRN------LASSLLASPYGER 681

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEV 572
            +  +         L E L          Y+ L+ L   + +             +    V
Sbjct: 682  RLTNFL------HLAELLQQVSSELDGEYALLRWLGEAVSRPSGQDAEQVLRLESERKLV 735

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +I+T+H +KGLE P+VFL           H      +    D+ G      ++       
Sbjct: 736  QIVTIHKSKGLEYPLVFLPFIC------SHRTAETPLYHEADEAGN-----RTILDLTGA 784

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    K    E  RLLYV +TR      +        N K       +  +      
Sbjct: 785  DSSLAEADKERLAEDLRLLYVALTRGVYATWLGLAPVRAGNGKSEKTDLHHTAIGYLLQK 844

Query: 692  DERVKKIKLTNSINK-----DEWIAYEWSTHHPENTPLERE---ETIKQLMDEQKIPKKL 743
             E      L  ++ +           E S   P   P+E+E   E   +           
Sbjct: 845  GEEGDAETLATALTELSQALPGVAVGEPSLTRPAPLPVEQEQLGEPQVRHFTSSLERDWW 904

Query: 744  FSPI----------------------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
             S                        +                +      S+ +  +   
Sbjct: 905  ISSYSGLAAQGNGHSKGVLANPGFDDEVATESASAAALLAESGEVAAPEPSIFTFPKGAR 964

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
             G ++H L + I                      +       L   +  +L+ P      
Sbjct: 965  PGTLLHSLFETIDFQSAAGESLSHHIAALLAQDGFDEDWAPVLQQQVEAVLDTPLETGFG 1024

Query: 836  ---MMTTAMSCDSYSEVSVSG-------------------------KINCPKKDIIISGR 867
                +          E+                              ++      ++ G 
Sbjct: 1025 EPVRLRDLAPERKQVELEFFLPMGRVTAPALTALCQQHDPLSRGNKPLSFATVQGMLKGF 1084

Query: 868  IDQISISQQNIFIFEYKTHH---------HVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            ID +   Q   ++ +YK++H             E     + +  Q  +Y   L      +
Sbjct: 1085 IDLVFEWQGRWYLLDYKSNHLGMSPADYSRPALERAMAEHRYDLQYLLYSLALHRLLTLR 1144


>gi|163748686|ref|ZP_02155939.1| ATP-dependent DNA helicase Rep [Shewanella benthica KT99]
 gi|161331796|gb|EDQ02600.1| ATP-dependent DNA helicase Rep [Shewanella benthica KT99]
          Length = 670

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/627 (16%), Positives = 212/627 (33%), Gaps = 124/627 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 K++   E++     L+  +    +    +       K+ K   +   L   L  
Sbjct: 112 DTLALLKDLTEDELDGDKDLLRSLMSTISNWKGDLVIPTQAVKIAKDEQS--QLFAALYV 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  K    LDF+DLI+    +L+     A +R +    I ++L+DE QDT+  Q+E+
Sbjct: 170 RYAQHMKAYNALDFDDLILIPTLILRHN---AEVRTRWQTRIQYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  D                VGD+ QSIYS+ GA+P+ ++   +             
Sbjct: 227 VKLLVGD----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPT--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +    +  S           G+   V +     
Sbjct: 269 RLIKLEQNYRSSQRILKAANILIANNPHVYEKTLFSELPY-------GEPLRVLI----- 316

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                                   ++    A R+   I+ MI              Q  D
Sbjct: 317 -----------------------AANEEQEAERV---IAEMIRH------KFMGKTQFGD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L+           +I    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFGRAEIKDIMAYLRLVVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++  P        + ++         ++++                +      K+I
Sbjct: 401 AFLRVVNLPKRGIGPSTLERLGTFANERQISMFDASFDPELNHHLPSAAMASLYKFGKFI 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN---- 539
            +         P +    ++                +     +  + E   +        
Sbjct: 461 VDTGETVTRGEPIEAIKHLIRNINYDDYLYETSTSSKAAEMRMKNISELYRWVTEMLEGD 520

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L E+++ L       + +   N ++V++MT+H +KGLE P VF+V T  ++  
Sbjct: 521 ELDEGMTLPEVVTRLTLRDMMERNSEDENGDQVQLMTLHASKGLEFPYVFMVGTEERILP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 581 HQSSID-----------------------------------EGNVDEERRLAYVGITRAQ 605

Query: 660 DQL--IICKHSNTSNEKKSNQRTWYDM 684
            QL  ++C+      E    + + + +
Sbjct: 606 QQLWFVVCRERRQFGETLRCEPSRFLL 632


>gi|308449677|ref|XP_003088040.1| hypothetical protein CRE_17775 [Caenorhabditis remanei]
 gi|308250192|gb|EFO94144.1| hypothetical protein CRE_17775 [Caenorhabditis remanei]
          Length = 679

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 101/632 (15%), Positives = 212/632 (33%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ I       T +  +          +L   YE  
Sbjct: 127 RDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHTTCETPEDVQ-----FAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL+     A +R +    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQDN---AEVRDRWQNRVRYLLVDEYQDTNTAQYILVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   K   +           +I+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLKEDFRN--------LKVIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  ++   +  ++D 
Sbjct: 281 EQNYRSTSRILKAANHVIENNPHIFDKKLWSDK------------GHGEVIRIITCRNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
             +                             + +++    +           KD  VL 
Sbjct: 329 DESE--------------------------RVVKDLLTHKLMNGK------NWKDYAVLY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARVLETQLRQMQ----IPYKLSGGQSFFGRAEIKDVMSYLRIIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFK--ICTQRHETETVYEYIQKFANCGISK-----FQHVIKYIHEL-I 492
           + +P        + K  +  Q +    +     +     + K           +I++   
Sbjct: 413 INTPKRAIGPVTLEKLGLFAQENHLSLLAAASDQRLTMVMPKKATTQLAEFAGFINDFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFL----NFTLRNEQNS 543
            +     P      ++                       D ++       +   R E   
Sbjct: 473 ELLDDDEPVPKIRQMMNDAGYIDYLRETAATPAQEKTKIDNVEMLYTSIQSLINRAEDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I ++       ++    + ++V ++T+H +KGLE P V+++    ++  HK+ 
Sbjct: 533 EKNIESVIRKMVLLDMLEQQQEDEDTDKVNLLTLHASKGLEFPFVYIMGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IAAETIEEERRLMYVGITRAQQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   ++   
Sbjct: 618 LTLAEQRKNGGQMKQMTPSRFLDELPQDELDW 649


>gi|332171790|gb|AEE21044.1| ATP-dependent DNA helicase Rep [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 671

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 107/653 (16%), Positives = 214/653 (32%), Gaps = 127/653 (19%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEFIKIR-DRFNTYKMF 120
           + + +  L   F+   +  +  + K   D+     K++L+  Q      + D     ++ 
Sbjct: 94  AEVKTLGLKAGFSLFDDKDSMALLKDLTDVELGGDKDQLQLLQSCISNWKNDLLLPEQLL 153

Query: 121 KSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           K T ++           Y+   +    LDF+DLI+    LLK  +    +R K    I +
Sbjct: 154 KRTSSAGDAEFAEFYQRYQNHLRAYNALDFDDLILLPTLLLKHNET---VRQKWQSRIRY 210

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+  Q+E++R L                   VGD+ QSIYS+ GA P+ ++ 
Sbjct: 211 LLVDEYQDTNTSQYELVRLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVL 260

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +              +I+L  ++RS+  IL   + +     +       S        
Sbjct: 261 LSKDFP--------DLRVIKLEQNYRSSGRILHCANILIQNNPHVFEKKLFSEL------ 306

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                                 +  +  ++A  IA+        
Sbjct: 307 ------------------------GYGSELRIITAKNEEHEAERVVAELIAH-------- 334

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                    +    KD  +L R    + L   +        +I    N          +K
Sbjct: 335 ------KFMQGTSFKDYAILYRGNFQSRLFEKVLMA----NRIPYKINGGTSFFGRTEVK 384

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------ 472
           D+MA  R +++Q+DD + + ++ +P        + K+         +++E          
Sbjct: 385 DIMAYLRLLVNQDDDNALLRVINTPTRGIGRVTLEKLGNFANQNRTSMFEAACSPMLSTV 444

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----- 527
            +   +   +   ++I EL    +          ++      +       +         
Sbjct: 445 ISGKSLESVEGFARWIVELSDEVKRSDSIAAIRQMIKDMGYEEWLYETSTSPKAAEMGMG 504

Query: 528 VLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            +     +        E ++  SLQE+++ L       +   +   ++V++MT+H++KGL
Sbjct: 505 NISTLFGWVSDMLEGGELDAPMSLQEVVNRLILRDMMERGEDTEETDQVQLMTLHSSKGL 564

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P VF+V     +  H+                                       +  
Sbjct: 565 EFPYVFMVGMEEGLLPHQSSID-----------------------------------EDN 589

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            EE  RL YVG+TRA  +L            +  Q      +++   +D   +
Sbjct: 590 IEEERRLAYVGITRAQKELFFTLAKERRQFGEVIQPEPSRFLHELPADDVHWE 642


>gi|330993524|ref|ZP_08317459.1| putative DNA helicase II-like protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329759554|gb|EGG76063.1| putative DNA helicase II-like protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 737

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 113/740 (15%), Positives = 212/740 (28%), Gaps = 133/740 (17%)

Query: 8   SLNESYELIYKDLW-PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   L  P     +   +   +  +      +      L  +      +++ 
Sbjct: 73  AAREMRERVSALLGEPAEGLWLGTFHALCARMLRRHAEHV-----GLTSSFTILDTDDQL 127

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            LL       +   ++             +   +++ +D  +            + T  +
Sbjct: 128 RLLKQVLEPYRIDTKRWPPQA--------IMGVIQRWKDRGLVPD----AITAAEDTDFA 175

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y++  K+    DF DL+++  ++L+K      +  +  +   +IL+DE Q
Sbjct: 176 NGRCAEIYTDYQQRLKQINACDFGDLMLHMTEILRKHPD---VLAQYHRFFRYILVDEYQ 232

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ IQ+  +R L             P  +  VGD+ QSIYS+ GAE + +LR +R    
Sbjct: 233 DTNTIQYLWLRLLAHRGAQ-------PSNICCVGDDDQSIYSWRGAEVENILRFERDFP- 284

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     ++ L  ++RST  IL     + +  E   G +                  
Sbjct: 285 -------GARVVRLERNYRSTRQILGAASGLIAHNEERLGKTLHPGR------------- 324

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             ++    S  DS  +       AR +   +  +          
Sbjct: 325 -------------EDAEGEKVRVISVQDSDDE-------ARMVGAEVERLRADGHPM--- 361

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   +I +LVR    T         L     +           +   I+D +A  R
Sbjct: 362 -------AEIAILVRAGFQTRAFEERLITL----GLPYRVVGGLRFYERAEIRDAIAYMR 410

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGIS 479
            +    DDL+F  ++  P        + K+    R     +   + +             
Sbjct: 411 VVNQPSDDLAFERIINVPRRGVGTTGLQKMHMHARARQMPLTAAVLEMLAAGEIRGRAKE 470

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
           +   +++ I     +            +L        + +    +    ++ L E +   
Sbjct: 471 QLAALMRSIATTREMLGREGHVVAIDHLLEDSGYIDMWKADKSPDAPGRLENLKELVRSL 530

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              E         L   LE     +     +  + + IMT+H AKGLE   VFL      
Sbjct: 531 ADYEN--------LSGFLEHVALVMDAEDRSGADSMSIMTLHGAKGLEFDTVFLPGWEEG 582

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           VF  +       +                                   EE  RL YVG+T
Sbjct: 583 VFPSQRTLDEGGL--------------------------------KGLEEERRLAYVGIT 610

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA    II   +N               V +        +     +        A   ST
Sbjct: 611 RARRLAIISHAANRRIYGNWQSAIPSRFVEELPAEHVETRGDTANSRRAFPGRPAVFGST 670

Query: 717 HHPENTPLEREETIKQLMDE 736
             P        +        
Sbjct: 671 PFPLMATRRVHDVTPPTAAR 690


>gi|307254049|ref|ZP_07535896.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258505|ref|ZP_07540242.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306862974|gb|EFM94921.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867409|gb|EFM99260.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 672

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 111/675 (16%), Positives = 226/675 (33%), Gaps = 131/675 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +    +     F       L +   P+     +++ K    L   +   +++   +    
Sbjct: 97  KLLGFKSGMTLFDEHDQLALLKHLLPENAAEDKDLLKA---LISTISNWKNDL--LSPEM 151

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              ++         +  +    Y+   K    LDF+DLI+    L ++   +     +  
Sbjct: 152 VLTRVRDERE---RVFSHFYRLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKT---RWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q+++++L+DE QDT+  Q+E+I+ L  D                VGD+ QSIYS+ GA+P
Sbjct: 206 QKVHYLLVDEYQDTNTSQYELIKLLVGD----------EANFTVVGDDDQSIYSWRGAKP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + + R +               +I+L  ++RS+  IL   + +    ++       S  +
Sbjct: 256 ENMQRLREDF---------DLKVIKLEQNYRSSQRILHCANILIDNNDHIFQKRLFSNLS 306

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              + +                                   + +  +    A RI     
Sbjct: 307 EGEKLN-----------------------------------VIEAKNEEHEAERIV---- 327

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                  + ++      + KD  +L R    + L+      L    +I    +       
Sbjct: 328 -----GELIAHRFSNKTKYKDYAILYRGNHQSRLLEK----LLMQNRIPYKISGGTSFFA 378

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY---- 469
              IKD+MA  R +++Q+DD +F+ ++ +P        + K+      +  +++E     
Sbjct: 379 RAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGAVTLEKLGLLANEKQVSLFEAIFDF 438

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
             IQ+         Q   ++I E+   A+   P +    +L   +            +  
Sbjct: 439 ELIQRLTPKPYQALQDFARWIVEIADQAERSDPIEAVKDLLAKIQYEAYLYETATSPKAA 498

Query: 523 NEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 +     +        E     +L ++++ L       +       ++V++MT+H
Sbjct: 499 EMQSRNVQTLFEWVQGMLEGDEIEEPMTLVQVVNRLTLRDMLERGEDDDEADQVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+                                     
Sbjct: 559 ASKGLEFPHVFLVGMEEGILPHQTSLD--------------------------------- 585

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +   EE  RL YVG+TRA   L   +CK      E    + + + +           +
Sbjct: 586 --EDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKPEPSRFLLELPQDDLVWESE 643

Query: 697 KIKLTNSINKDEWIA 711
           K K+T     ++  A
Sbjct: 644 KPKMTEEQKVEKTSA 658


>gi|255319912|ref|ZP_05361113.1| helicase, UvrD/Rep family [Acinetobacter radioresistens SK82]
 gi|262379193|ref|ZP_06072349.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens SH164]
 gi|255303045|gb|EET82261.1| helicase, UvrD/Rep family [Acinetobacter radioresistens SK82]
 gi|262298650|gb|EEY86563.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens SH164]
          Length = 679

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 213/632 (33%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ I      +T +  +    +      L   YE  
Sbjct: 127 RDNLSGAESKELIAKAMKKISDWKNDLILPEQAHSTCETPEDVQMAH-----LYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQEN---AEVRDKWQNRVRYLLVDEYQDTNTAQYILVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   ++              +I+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLQQDFPN--------LKVIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V +   +       S              G   +   +  ++D 
Sbjct: 281 EQNYRSTSRILKSANAVIANNPHIFDKQLWSDK------------GHGDVIRVITCRNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A R+   I          ++        KD  VL 
Sbjct: 329 D-----------------------EAERVVKDI---------LTHKLMNARSWKDYAVLY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARVLETQLRQMQ----IPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFK--ICTQRHETETVYEYIQKFANCGISK-----FQHVIKYIHEL-I 492
           + +P        + K  +  Q +    +     +     I K           +I     
Sbjct: 413 INTPKRAIGPVTLEKLGLFAQDNHLSLLSAAGDQRLTMVIPKKAVTQLHEFADFIGNFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNFTL----RNEQNS 543
            +     P      ++           +           D ++   +       R E   
Sbjct: 473 ELLDDDEPVPKIRQMMNEAGYIDYIREQAATPAQEKSKLDNIESLYSSIQSLINRAEDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I ++       ++    + ++V ++T+H AKGLE P V+++    ++  HK+ 
Sbjct: 533 DKNIESVIRKMVLLDMLEQQQEEEDIDKVNLLTLHAAKGLEFPYVYMIGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IASETIEEERRLMYVGITRARQALT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   ++   
Sbjct: 618 LTLAEQRKNGGQMKQMTPSRFLDELPQDEVEW 649


>gi|260462130|ref|ZP_05810374.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
 gi|259031990|gb|EEW33257.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
          Length = 899

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 111/594 (18%), Positives = 179/594 (30%), Gaps = 152/594 (25%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+ +   + +       +     +   +IL+DE QDT+ 
Sbjct: 210 RELYKAYQERLQTLNACDFGDLLCHPIRIFRANPD---VLKDYHRRFKYILVDEYQDTNT 266

Query: 191 IQWEVIRSLTEDFFVG-------------------------------------------- 206
            Q+  +R L +                                                 
Sbjct: 267 AQYMWLRLLAQRPQSSPLEGEVPAKRAEGVAPEGTAAASRTAARTPPDRASPGHPPLKGE 326

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
            N   +   +  VGD+ QSIY + GAE   +LR  +             +II L  ++RS
Sbjct: 327 GNPRPATVNICCVGDDDQSIYGWRGAEVDNILRFDKDFP--------GATIIRLERNYRS 378

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           TA IL     + +  E   G +  +                            +     +
Sbjct: 379 TAHILGAASHLIAYNEGRFGKTLFTDR--------------------------NDPEDGK 412

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
            +  + +DS  +       AR I  TI                     D+ +LVR     
Sbjct: 413 VNVHAAWDSEEE-------ARAIGETIEAYQRQKH----------NLNDMAILVRASFQM 455

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                    L     ++          + + I+D +A  R + +  DDL+F  ++  P  
Sbjct: 456 RAFEDRFITL----GLNYRVIGGPRFYERMEIRDALAFFRVVANGGDDLAFERIVNVPKR 511

Query: 447 NFSEDDIFKIC-TQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHIAQFCS 499
              E  I +I  T R     + E     A          +  + V           +   
Sbjct: 512 GLGEATIRQIHDTARALRIPMLEAAANLAESDELKPKPRAALREVAANFERWQKALETTP 571

Query: 500 PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
             +    IL        + +    E    ++ L E +      E         L S LE 
Sbjct: 572 HTELAETILEESGYTDMWKNDRSAEAPGRLENLKELVRSMEEYES--------LRSFLEH 623

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               +    +A  + V IMT+H+AKGLE   VFL      +F H+               
Sbjct: 624 VALVMDAEQNAGLDAVSIMTLHSAKGLEFETVFLPGWEEGLFPHQR-------------- 669

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                              +    +S  EE  RL YVG+TRA   L I   SN 
Sbjct: 670 ------------------ALDEGGRSGLEEERRLAYVGLTRAKKNLHIWFVSNR 705


>gi|229528683|ref|ZP_04418073.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)]
 gi|229332457|gb|EEN97943.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)]
          Length = 1208

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 124/893 (13%), Positives = 259/893 (29%), Gaps = 134/893 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    +      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   L   +            L  +GD K
Sbjct: 366  DEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLGY--------PQCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVNAHYT----------LGTNWRSSAAMVAAVNQVFSSATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP---QSKTDYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L     
Sbjct: 521  QMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++          +        + 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTGNEEA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------ 683
            +    +    E  RLLYV +TRA     I      +        + +             
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 684  --------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                     +     N   V +        +                  +  +   ++  
Sbjct: 851  GGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTS 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLII 786
               +  +      + + E  +L     D       +    +          +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +        +           ++   ++    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAHSEPNTKIILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            Q   ++ ++K++H       + P           +  Q  IY   L     ++
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLSGAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|254225834|ref|ZP_04919438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51]
 gi|125621648|gb|EAZ49978.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51]
          Length = 1208

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 129/942 (13%), Positives = 272/942 (28%), Gaps = 139/942 (14%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               +   I + ++   +  L      +       +  KS           +         
Sbjct: 263  ALLRRLPILDAWAQSETQDLQVPSELE-EFTQSGLLAKSKKGNPPQLALFERIEAFLAEP 321

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             + K      A      +L     +AK  +  L F+DL+   +  L   D    +  +I 
Sbjct: 322  VSLKTPLLVHAIHHCRHWLA----KAKSTHHWLSFDDLLTQLSAAL-DNDEQGLLGERIR 376

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                  +IDE QDT  +Q+ +   L  D+            L  +GD KQ+IY+F GA+ 
Sbjct: 377  TLYPVAMIDEFQDTDPLQYSIFSRLYLDY--------PQCGLLMIGDPKQAIYAFRGADI 428

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               ++ +   +   T          L  ++RS+A ++  V++VFS   +    S+D    
Sbjct: 429  FTYIKARNQVRAHYT----------LGTNWRSSAAMVAAVNQVFSSATHPFIYSDD---- 474

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            I  +          + W        +      E          +    + +A   A  I 
Sbjct: 475  IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP---QSKADYYAQMAEACAAQIQ 531

Query: 355  NMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +++      +    R   I+A D+ VLVR   +  ++      L      SV  ++R  +
Sbjct: 532  HILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGIASVYLSNRDSV 588

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  +D+  L   +   ED+      + S LF  +  ++  +    +E E +    ++
Sbjct: 589  FASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQ 648

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            +        + V+  +  ++               L   +G +             + E 
Sbjct: 649  YRRLWSE--RGVLPMLRAVLTQRH------IAERWLTESEGERWLTDYL------HISEL 694

Query: 533  LNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L    R   +    L+ L   +              +   +    V+I+T+H +KGLE P
Sbjct: 695  LQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYP 754

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL    S                 ++     +    +        + +    +    E
Sbjct: 755  LVFLPFVMS-------------YRESSEGKYYDVESATTWVDLTGNEEALAKADQERLAE 801

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------------MVY 686
              RLLYV +TRA     I      +        + +                      + 
Sbjct: 802  DLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGGIADLQQALL 861

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                N   V +        +                  +  +   ++     +  +    
Sbjct: 862  KQCENLPDVVQCPPPKRFEQAYQPPKLDERELTARELSQAIDRRWRVTSYSGLVMQSSHA 921

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLIIHKLLQVIFTLP 797
              + + E  +L     D       +    +          +    G  +H L + +    
Sbjct: 922  RHDPLQELPLLEVGGFDLDSAQERDGAALESAERSIFNFPRGARPGTFLHSLFEEVDFQQ 981

Query: 798  EHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVS 850
              + +           ++   ++    L   +  +L  P       +   M+    +E+ 
Sbjct: 982  SAQSEPNTKIILELMESEQIESEWLPVLQHLVDTVLSTPLDGKTLRLQQIMAAQRLTELE 1041

Query: 851  VSGKINCPKKDII-------------------------ISGRIDQISISQQNIFIFEYKT 885
                I       +                         + G ID +   Q   ++ ++K+
Sbjct: 1042 FLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQYQGRYYVLDWKS 1101

Query: 886  HHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            +H       + P           +  Q  IY   L     ++
Sbjct: 1102 NHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|119472177|ref|ZP_01614379.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Alteromonadales bacterium
            TW-7]
 gi|119445096|gb|EAW26390.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Alteromonadales bacterium
            TW-7]
          Length = 1188

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 149/984 (15%), Positives = 298/984 (30%), Gaps = 137/984 (13%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILK----KAQTLQQASQTQCIEERFSLLSSF 72
              D+W      ++ I ++     E G    +K              +    + F   S  
Sbjct: 210  LDDVWQARDEYLALIPQFKEDCQEHGFTDAIKGSGLSGAKTPARKASLAALDAFCASSDV 269

Query: 73   FL-----TQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
            F         F          T    K  P     L    D    + +  N         
Sbjct: 270  FFEFGTNKYSFEIWSTENLSDTTNYKKNQPLFTHPLLSQFDTLSALNNTMNQGLKIALVQ 329

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                 A+++ +   + K++  V+  +DL+ N    L   +    +  KI Q     +IDE
Sbjct: 330  ---EAARWVKSAIVKRKQEQSVITPDDLLTNLYTAL-NNEQGDVLAQKIAQLFPVAMIDE 385

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT  IQ+ +   +            +  TL  +GD KQ+IY F GA+    +  K+  
Sbjct: 386  FQDTDPIQYGIFSQIYG---------QTNTTLAMIGDPKQAIYGFRGADIFTYIGAKKAV 436

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
             +             L  +FRS++DI+  V+ +FS  +N      +        S++  +
Sbjct: 437  DE--------PQQFTLGTNFRSSSDIVNSVNSLFSKHDN--SFIYNDVIPFNKVSAKGKK 486

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             G   L +   +          E+         +    + LA   A  I  ++      +
Sbjct: 487  AGESFLIDGKPANAFEFKVFVDEAADEKNKPTSKGLGQAHLATYFANKIVTLLERAKQGT 546

Query: 365  NGKKR-VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                +  I A DI +LVR R +  ++       K    I+ V   R  +        L+ 
Sbjct: 547  ACIGKMPISAADICILVRDRVEAQIMKKALSESK----IASVYLSRDSVFSQELSHHLLN 602

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
                +  Q D+     +L  PLF  S +D++ +    +  +    +  + ++      Q 
Sbjct: 603  FLTALHGQYDESLLRGVLAGPLFCLSYNDVYALADNENAWQEHLNFFAQLSHIWHK--QG 660

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             +  +  L       S +       G     +++++ F       L E L       + +
Sbjct: 661  AMAMLERL------LSHNQLSAKWQGLGYNVERWLTDF-----RHLGEILQQKQIELEGT 709

Query: 544  YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L+    ++ Q     ++    ++ N V+I+T+H +KGLE P+VF+            
Sbjct: 710  LRLLRWFAQKVSQQDGETVQVRLESDANLVKIVTMHASKGLEYPLVFMPFASGYR----- 764

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                           +     +     +   D ++  +K    E  RLLYV +TRA    
Sbjct: 765  ----------ETKEALYHKNGKLIYDLSKNEDALQQAEKERLAEDLRLLYVALTRAVHFC 814

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
             +  ++    +          + +  F   E          +++              + 
Sbjct: 815  ALGVYNIGQGQSSRLAIQSSALGHVLFSELEISSSQIWRTHLSEFCDKHTFMCYQQFTSE 874

Query: 723  PLEREETIK---------------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
             L ++ T++                    ++  +       +       L P   D   +
Sbjct: 875  ELRQQGTLQFVNTEAAQQILSVNNSKAHIERDWRATSFSALSFKKHSDELAPGRSDEDHE 934

Query: 768  --------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL---- 815
                      L S  S  +    G  +H++ + I                ++  K     
Sbjct: 935  KDEFAVQQDELPSPFSFPKGAKPGSCLHEIFEQIDFTSPVAHPTNSEQNLSQVIKRAFDK 994

Query: 816  --WPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSVSGK------------ 854
                          +  +L  P+       ++     D   E+  +              
Sbjct: 995  YHISDTWQPIAQQWVLDVLNCPLNVQTDLSLSKLAPSDCLVEMEFNLPLTSLSAPKLNEV 1054

Query: 855  -----------INCPKKDIIISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHIPYT 899
                       ++      ++ G +D I   Q   +I +YK+++        E E +   
Sbjct: 1055 LIKHFGFVQSKLDFSHVKGLLKGFVDLIFCYQGKYYILDYKSNYLGNTPKDYEPEQLEQA 1114

Query: 900  -----HIAQLSIYEKILKDSYPNK 918
                 +  Q  IY   L      +
Sbjct: 1115 MSSHQYHLQYLIYTVALHRLLKQR 1138


>gi|323143987|ref|ZP_08078641.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
 gi|322416236|gb|EFY06916.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
          Length = 765

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/585 (18%), Positives = 184/585 (31%), Gaps = 94/585 (16%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           + ++   +  L + +   Y    +  C LDF+DLI     +L+       I+ K      
Sbjct: 168 ILEAAANASNLKEQVFWQYIYQCRTACFLDFDDLIAFALTILRT---RKDIKEKWQSRFE 224

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           +I +DE QD   +Q+E+I  L+             + LF VGD  Q+IYSF GA  K   
Sbjct: 225 YIEVDEFQDIDALQYELISILSG----------KHKNLFIVGDPDQTIYSFRGANVKYFT 274

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN---------AQGLSE 289
                              I L  ++RS A IL     + S  ++          + +  
Sbjct: 275 DFAEKFP--------GTVTINLFKNYRSQAYILDCAYTLISNNDDPGRKKLQAMRKDIDM 326

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD-------SLPQESSA 342
           D+   I    +            +         N     +    D        +    S 
Sbjct: 327 DAMAAIAEIKNNEEDDLKTADLLKAAFNKQLLPNDYPVEFKIVEDNKKTMLPVIAGCPSV 386

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  +   I N+             + +   + VL R +  +  I          Y I
Sbjct: 387 QSQAEFVVREILNIKD-----------INRHSSVAVLYRSKHLSQSIEQAL----IKYNI 431

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                      +   IKD+++  R I + +DD +FV ++  P   F    + ++     +
Sbjct: 432 PYRVYADVRFMERKEIKDVVSYLRLIFNPDDDAAFVRIINVPRRGFGITRLSRLKNLASQ 491

Query: 463 T-----ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                  T+   +        +  +  ++ I  L   +      +    +L   K     
Sbjct: 492 DNHSLFRTLVHRLDDRDLNVTAAVKEFVENIILLNEKSPAGPSAEL-EKVLNLFKYEVML 550

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                N+ ++ L          E         +   L     +  +    N N+V +MTV
Sbjct: 551 KKEGDNDRLESLATLRFLARDFENKMGER-SNIADFLTHLALSSSKDDDNNENQVELMTV 609

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE   VF+V     +F       +                               
Sbjct: 610 HNSKGLEFDYVFVVGVNEGIFPSSKSSSL------------------------------- 638

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                  +E  RLLYV MTRA  QL IC    T+   +  + + +
Sbjct: 639 ----QELQEERRLLYVAMTRAQKQLFICMFGGTAYSGEELKVSRF 679


>gi|78484473|ref|YP_390398.1| DNA-dependent helicase II [Thiomicrospira crunogena XCL-2]
 gi|78362759|gb|ABB40724.1| ATP-dependent DNA helicase UvrD [Thiomicrospira crunogena XCL-2]
          Length = 741

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 101/619 (16%), Positives = 195/619 (31%), Gaps = 135/619 (21%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +    + +       +     +   YEE  K+  ++DF +L++  ++L  K      + 
Sbjct: 151 EEGRRPHHIDPGHNPYVRQMVQIYQAYEEQCKRAGLVDFAELLLRAHELWLKNP---QVL 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ +Q+  +R L            +   LF VGD+ QSIY + 
Sbjct: 208 AHYQARFRHILVDEFQDTNSLQYAWLRVLAG----------ASGRLFIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+ + + R                  + L  ++RST  IL   + + +  ++  G +  
Sbjct: 258 GAKIENIRRFDEDF--------SDVKTVRLEQNYRSTGTILKAANGLIAFNQDRMGKNLW 309

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           S                            +            F+ L +       AR + 
Sbjct: 310 S----------------------------AGEEGDPIRIYEAFNELDE-------ARYVC 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             + +                   ++ VL R    + ++           +I        
Sbjct: 335 NQVESWCEQGG----------SRSEVAVLYRSNAQSRVMEQAL----LQAQIPYRVYGGL 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY 469
              D   IKD++A  R +++ EDD +F  +   P          +I    R +  ++++ 
Sbjct: 381 RFYDRAEIKDVLAYLRLLVNTEDDAAFERVYNHPPRGIGNKTADQIREVARMQEISLWQA 440

Query: 470 IQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR---QQFISRF 521
             + A         +     +  I  L       +  D    ++     +   ++  S  
Sbjct: 441 ATQMAQDGLTARAKTAVNGFLSLIESLKDSTAELTLQDQVIQVISRSGLQLHFEKDTSEQ 500

Query: 522 GNEVIDVLDEFLNFTLRN--------------------EQNSYSSLQE-LISELEQYPPT 560
           G   ++ LDE +N                         E     + +  L   L Q    
Sbjct: 501 GQSRLENLDELINAVSVFKPVQDNDTVEGVVPEEAAMTEAFDQPNFENPLAEFLAQAALE 560

Query: 561 I-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             ++      + V++MT+H AKGLE P+VF++     +F  +                  
Sbjct: 561 AGEQQADQWESSVQLMTLHAAKGLEFPLVFMIGLEEGLFPSQQS---------------- 604

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                                    EE  RL YVG+TRA  QL+I   +           
Sbjct: 605 ------------------QEDPYRLEEERRLAYVGITRAEKQLMISFANRRRMHGSEFYP 646

Query: 680 TWYDMVYDSFHNDERVKKI 698
                + +   +  ++ ++
Sbjct: 647 LPSRFIKEIPDDCVQMVRL 665


>gi|78223920|ref|YP_385667.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
 gi|78195175|gb|ABB32942.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
          Length = 678

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 98/651 (15%), Positives = 196/651 (30%), Gaps = 122/651 (18%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
              ++ +     + K  D +  L +       +         +        LA  +   Y
Sbjct: 119 GLIRQAMREVNADGKKFDAETLLWRISGWKNGLIPPDRAVPRYDDPDEL--LACDVYPRY 176

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           +        +DF+D+I+ T  LL+       +     +   +I++DE QDT+  Q+  I 
Sbjct: 177 QALLHACNAIDFDDIIMLTVRLLQDYPE---VLDHWQERFRYIMVDEYQDTNASQYLFIS 233

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L   +          R L  VGD+ QSIY + GA+   +L  +R              +
Sbjct: 234 LLARKY----------RNLCVVGDDDQSIYGWRGADVGNILDFERDYP--------GCRV 275

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           ++L  ++RST  IL   ++V       +                        LW      
Sbjct: 276 VKLEQNYRSTGTILEAANQVIKNNAKRKEKR---------------------LW------ 308

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                  +        D   +       A  +   +              +  +   D  
Sbjct: 309 -TDVGEGRPIDMVIAQDDEEE-------ATLVVERLQ---------MERYQHNLSFGDFA 351

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +L R    +       RF      I  V        +   +KD ++  + I +  D+ + 
Sbjct: 352 ILYRTNSQSRAFEEQLRFE----DIPYVLVGGMQFYERKEVKDALSYLKVIDNPLDEQAL 407

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ- 496
           + ++  P     +  + KI     E E                     + +     +   
Sbjct: 408 LRVVNFPRRGIGDGTVVKINQWSLEHECPLLEAMGRVEEIEGIPGATREKVLTFHRLITG 467

Query: 497 ----FCSPHDFFTLI---LGAKKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQN-S 543
               F  P D    +          ++               + +++ +N     E+   
Sbjct: 468 AAGEFRRPGDLAARVKGFYDRIGLEEELYRTIEEPATARRKVENVEQIINSMAGYEERIP 527

Query: 544 YSSLQELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            ++L   + ++                  + V +M++H++KGLE P VFLV    ++  H
Sbjct: 528 GATLSGFLEKVSLMDEDRFSGKDKKEHGKDAVTLMSLHSSKGLEFPFVFLVGFEEEILPH 587

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                      +  + +E  RL YVG+TRA  
Sbjct: 588 K----------------------------------KSVEEGMSIDEERRLCYVGITRARR 613

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            L I +  +     K  +R     + +      +V + ++  +  ++E  A
Sbjct: 614 HLTITRCLHRKKYGKLLERQPSRFLEEIPERLVQVHEGEVKKAATEEEQEA 664


>gi|119943802|ref|YP_941482.1| UvrD/REP helicase [Psychromonas ingrahamii 37]
 gi|119862406|gb|ABM01883.1| UvrD/REP helicase [Psychromonas ingrahamii 37]
          Length = 723

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 102/581 (17%), Positives = 188/581 (32%), Gaps = 120/581 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YEEA +   ++DF +L++  ++       +  +     Q   H+L+DE QDT+ +
Sbjct: 172 QVYQAYEEACQLAGLVDFAELLLRAHE---LLLNNPSLLLHYQQRFRHVLVDEFQDTNKL 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +  LTE+             L  VGD+ QSIY + GA+ + + R  R         
Sbjct: 229 QYAWLNLLTEN----------NSYLTIVGDDDQSIYGWRGADVENIQRFLRE-------- 270

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + L  ++RST  IL   +++     +  G                      +LW
Sbjct: 271 KDNPVTVCLEQNYRSTGHILNASNQLIKNNSDRLGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   S  + Q  +  S F+   +        R +   +     +            
Sbjct: 310 -------TSGEDGQPIAIYSAFNDYDET-------RYVTSQLKLWQNSGK---------- 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  +  +L R    + L            +I           D L IKD +A  R I + 
Sbjct: 346 KLAECAILYRSNAQSRLFEEQLMA----QQIPYHIYGGQRFFDRLEIKDSIAYLRLINNH 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQHV 484
           +DD +F  ++  P        + KI    R +  T+++        ++ +          
Sbjct: 402 QDDAAFERIINKPKRKIGNTTLDKIRLCAREQGYTMWQASLFLIEQKQLSAGANISLSGF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRN-- 539
           I+ I    +             ++        F +  G      I+ L E ++ T     
Sbjct: 462 IELIKRFENETSELPLFQTVDHVIRHSGLHSMFENEKGEKSRSRIENLQELVSATKSFVI 521

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E+   S +   ++                 + V++MT+H AKGLE P VF+V     +
Sbjct: 522 PPEEQEMSEVTAFLAYAALESGD--NQADEFDDAVQLMTMHAAKGLEFPQVFMVGVEEGM 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F  +                                       +    E  RL YVGMTR
Sbjct: 580 FPGQQS----------------------------------ADDEVRLAEERRLCYVGMTR 605

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           A  +L +C   +     +    +    + +    D    ++
Sbjct: 606 AMQKLTLCHAESRRLYGQEKFHSPSRFISELPEQDIEYIRL 646


>gi|290477108|ref|YP_003470021.1| DNA-dependent ATPase I and helicase II [Xenorhabdus bovienii
           SS-2004]
 gi|289176454|emb|CBJ83263.1| DNA-dependent ATPase I and helicase II [Xenorhabdus bovienii
           SS-2004]
          Length = 721

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 100/551 (18%), Positives = 186/551 (33%), Gaps = 116/551 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+EA  +  ++DF +L++  ++L   +     I     +   ++++DE QDT+ IQ
Sbjct: 173 IYQAYQEACDRAGLVDFAELLLRAHELWLNKP---QILQHYRERFTNLMVDEFQDTNSIQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L  D             +  VGD+ QSIY + GA+ + + R  R          
Sbjct: 230 YAWIRLLAGD----------SGKVMIVGDDDQSIYGWRGAQVENIQRFLRDFPA------ 273

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST++IL   + + +   +  G S                     LW 
Sbjct: 274 --AETIRLEQNYRSTSNILKAANALIANNNDRLGKS---------------------LW- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +  +    F+ L +        R +   I + +               
Sbjct: 310 ------TEGGEGEPIALYCAFNELDES-------RYVVSRIKHWLDNGGAL--------- 347

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K+  +L R    + ++            +           +   IKD ++  R + ++ 
Sbjct: 348 -KECAILYRSNAQSRVLEEAL----LQVSMPYRIYGGQRFFERQEIKDALSYLRLVSNRY 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQHVI 485
           DD +F  ++ +P     +  +  +    R + +T++E        +  A    S  Q  I
Sbjct: 403 DDSAFERVVNTPTRGIGDRTLDVVRQVARDQQKTLWESCLLLLQQKVLAGRAASALQRFI 462

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE-Q 541
           + I  L    Q    H     I+        +    G +     + L+E +  T +   +
Sbjct: 463 ELIDALETETQEMPLHVQTDRIIRDSGLWAMYQQEKGEKAQARIENLEELVTATRQFSFK 522

Query: 542 NSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    L  L + L        +       + V++MT+H+AKGLE P VF+V     +F  
Sbjct: 523 DEDEDLMPLQAFLSHAALEAGEGQADVYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPS 582

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                           EE  RL YVG+TRA  
Sbjct: 583 QMSLDEGG----------------------------------RLEEERRLAYVGVTRAMQ 608

Query: 661 QLIICKHSNTS 671
           +L +       
Sbjct: 609 KLTLTYAETRR 619


>gi|320526748|ref|ZP_08027938.1| putative ATP-dependent nuclease subunit A [Solobacterium moorei
            F0204]
 gi|320132716|gb|EFW25256.1| putative ATP-dependent nuclease subunit A [Solobacterium moorei
            F0204]
          Length = 1107

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 144/854 (16%), Positives = 274/854 (32%), Gaps = 87/854 (10%)

Query: 90   NKKSPDLKEKLKKSQD-EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
             +    LK+ LK   +    +     +    +    A + LAK    +    K++N  + 
Sbjct: 333  ARAMDHLKKILKNMAEERLNEDDFVSDARDTYIINTALINLAKNTYQNCIRIKQENTAMY 392

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F D+     ++LK  +V+  IR  + +    ++IDE QDTS +Q  +I  +         
Sbjct: 393  FSDMERYAYEILKHENVAKVIRDNLQE----VMIDEFQDTSKLQDTIIEMIAS------- 441

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT---NAGQKFSIIELPLSFR 265
                P  +F VGD KQSIY F  A+P  +  +   ++K      +   + + I L  ++R
Sbjct: 442  ----PNCIFRVGDTKQSIYRFRQAKPVLMRSKLNESEKITEETIDTSMQSAKIILSRNYR 497

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            S   I+   + +F    N +  +E                              +   P+
Sbjct: 498  SDVRIIQFTNILFQKIMNVKESTEKYGEDDIVDWFPKND-------SPDALIEFASYAPK 550

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ-AKDILVLVRKRK 384
             ++     D    E    I A  IA  I +    +   +      +    D  +L+R   
Sbjct: 551  NKTTIVSDDEDEDEDIKMIKANWIANKIIDTYNQEFELAKKNDTKLPSFHDFAILLRSHG 610

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            D        +       I    + R         + ++AL   +L +E D +    + S 
Sbjct: 611  DKAY----LKAAFEAKGIPYSIDTREGFYRSELCQTVIALCTAMLDEEADSALFACMVSN 666

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            L+N+S+++I K   +    +TV +               +   +     IA         
Sbjct: 667  LYNYSDEEIAKAKIRLGSIKTVAKEF------------GIYDDLQMYKEIADTYGIPRML 714

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
            + +           +R         D     T+      Y S+ E ++ L+     +   
Sbjct: 715  SELANHNTY----FNRLNISQQSNFDYLFEMTV---SAKYHSVAEFLNALKAVEDEVSNE 767

Query: 565  H---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                 +  + V + T+H +KGL+   VFL    +  F                   +   
Sbjct: 768  AVSKGSADDIVTVTTIHHSKGLQYKYVFLWSNATNQFRDSAEAVNVDDDLYLGLNFLCTN 827

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
              ++K +      +         EE+ R+LYV +TRA  +L I          +  +   
Sbjct: 828  PYRAKRKTIHKRAIEYKANLEDAEEFIRILYVAVTRAVRRLYIVDALLKPIPYRGKKFML 887

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             D++  +  +   +  +              +     P        +  + + +      
Sbjct: 888  GDLLIRNGMSGLILSTMANE--------PIMKRVDIDPSWNVYLEHKETETVTELPHYG- 938

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                     + E  IL PS+ +         L   N     G  IH   + I        
Sbjct: 939  ------YTSVEEKEILTPSSTEFGSSLPALDLAETNAGREYGTHIHACFEQIP------- 985

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
               + +          + E K+L        ++             E+          + 
Sbjct: 986  -TRLFNADDLTFLNLSSTELKHL----LAFGDS----DIYHQAVEGEIHHEYPFYVQTEK 1036

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
              I G +D +SI +  I + ++KT      E+  I   +  Q++ Y K L   YPNK++ 
Sbjct: 1037 EKIHGIMDFVSILEDRIILIDFKTD---NAELSKIKSLYTEQINTYRKALLLIYPNKTID 1093

Query: 922  CLLIYVSEPKVFII 935
                 V   K   I
Sbjct: 1094 AYAWSVHHDKALEI 1107


>gi|262170720|ref|ZP_06038398.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451]
 gi|261891796|gb|EEY37782.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451]
          Length = 1208

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 128/942 (13%), Positives = 270/942 (28%), Gaps = 139/942 (14%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               +   I + ++   +  L      +       +  KS           +         
Sbjct: 263  ALLRRLPILDAWAQSETQDLQVPSELE-EFTQSGLLAKSKKGNPPQLALFERIEAFLAEP 321

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             + K      A      +L     +AK  +  L F+DL+   +  L   D    +  +I 
Sbjct: 322  VSLKTPLLVHAIHHCRHWLA----KAKSTHHWLSFDDLLTQLSAAL-DNDEQGLLGERIR 376

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                  +IDE QDT  +Q+ +   L  D+            L  +GD KQ+IY+F GA+ 
Sbjct: 377  TLYPVAMIDEFQDTDPLQYSIFSRLYLDY--------PQCGLLMIGDPKQAIYAFRGADI 428

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               ++ +       T          L  ++RS+A ++  V++VFS   +    S+D    
Sbjct: 429  FTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATHPFIYSDD---- 474

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            I  +          + W        +      E          +    + +A   A  I 
Sbjct: 475  IPFQPVAASPGADKRHWTLEGQVQPALTYWWPEDLDKP---QSKTDYYAQMAEACAAQIQ 531

Query: 355  NMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +++      +    R   I+A D+ VLVR   +  ++      L      SV  ++R  +
Sbjct: 532  HILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGIASVYLSNRDSV 588

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  +D+  L   +   ED+      + S LF  +  ++  +    +E E +    ++
Sbjct: 589  FASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQ 648

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            +        + V+  +  ++               L   +G +             + E 
Sbjct: 649  YRRLWSE--RGVLPMLRAVLTQRH------IAERWLVESEGERWLTDYL------HISEL 694

Query: 533  LNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L    R   +    L+ L   +              +   +    V+I+T+H +KGLE P
Sbjct: 695  LQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYP 754

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL    S                 ++          +        + +    +    E
Sbjct: 755  LVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTGNDEALAKADQERLAE 801

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------------MVY 686
              RLLYV +TRA     I      +        + +                      + 
Sbjct: 802  DLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGGIEDLRQALL 861

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                N   V +        +                  +  +   ++     +  +    
Sbjct: 862  KQCENLPDVAQCPPPERFEQAYQPPQLDERELTARELSQAVDRRWRVTSYSGLVMQSSHA 921

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLIIHKLLQVIFTLP 797
              + + +  +L     D       +    +          +    G  +H L + +    
Sbjct: 922  RHDPLQDIPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQ 981

Query: 798  EHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVS 850
              + ++          ++    +    L   +  +L  P       +   M+    +E+ 
Sbjct: 982  SAQSEHNTQIILELMESEQIETEWLPVLQQLVDTVLSTPLDGKVLRLQQIMAAQRLTELE 1041

Query: 851  VSGKINCPKKDII-------------------------ISGRIDQISISQQNIFIFEYKT 885
                I       +                         + G ID +   Q   ++ ++K+
Sbjct: 1042 FLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQYQGRYYVLDWKS 1101

Query: 886  HHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            +H       + P           +  Q  IY   L     ++
Sbjct: 1102 NHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|222824055|ref|YP_002575629.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
 gi|222539277|gb|ACM64378.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
          Length = 687

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 96/609 (15%), Positives = 209/609 (34%), Gaps = 119/609 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLN 134
            K    K++ ++ +      +   +   +++    ++     +  K           +L 
Sbjct: 116 DKKKILKDLASENLQSSLASIGAYISNFKNQSKSAQEIRKELEFLKDEKNKNYEEIIHLY 175

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             YE    +N  +DF+DL++ TN +L+    +        Q+  +I +DE QDT+ +Q++
Sbjct: 176 EQYEHFLIQNNFMDFDDLLMLTNKILEDEAFAKE----QSQKYTYITVDEYQDTNALQYQ 231

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S   +  VGD+ QSIY + GA+ + +L  K             
Sbjct: 232 ILKKLCA----------SHENICVVGDDDQSIYGWRGAKIENILNFKEQFNN-------- 273

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +++L  ++RST+ IL   +++        G +                          
Sbjct: 274 VKLVKLEQNYRSTSAILQAANELIEHNRKRLGKTLI------------------------ 309

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                ++   ++ +     D   +         ++A  +S ++ +           I   
Sbjct: 310 ----CTKDEGEEITILQNDDEKIESF-------KVAREVSKLLNSG----------INPS 348

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           +I +L R    +  +       K    I           +   IKD+++  R + +  DD
Sbjct: 349 EIAILYRVNALSRALEEAFSKEK----IPFKLLSGIRFYERAEIKDIISYLRLLSNLNDD 404

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
            SF  ++  P  NF    + K+    +    +++E +      G    +   +    ++ 
Sbjct: 405 YSFKRIINRPKRNFGNASLEKLENYAKENHLSLFESLCALQGSGFFSKKTDKELEKFILS 464

Query: 494 IAQFCSPHDFFTLILG-AKKGRQQFISRFGNEVID---VLDEFLNFTLR-NEQNSYSSLQ 548
           + +     D   +IL   ++ + +   +   E  D    +DE            +Y+ L 
Sbjct: 465 MHKIKEKDDLLAMILALEEEFKIKEFYKDNPEGEDKLLNIDELYANLKDKISHGNYNGLD 524

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           ++++E+            +    + IM++H +KGLE   VF++      F          
Sbjct: 525 DILNEISLLNEQDGLDKES----ICIMSIHASKGLEFDYVFIIGLEEGFFPLTS------ 574

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                          + S  EE  RL YV +TRA  +L +   +
Sbjct: 575 -------------------------------ESSNIEEERRLAYVAITRAKKKLYLSYAN 603

Query: 669 NTSNEKKSN 677
           +   +    
Sbjct: 604 SRFYKGSRT 612


>gi|298674325|ref|YP_003726075.1| UvrD/REP helicase [Methanohalobium evestigatum Z-7303]
 gi|298287313|gb|ADI73279.1| UvrD/REP helicase [Methanohalobium evestigatum Z-7303]
          Length = 1085

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 133/892 (14%), Positives = 262/892 (29%), Gaps = 155/892 (17%)

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAH---YEEAKKKNCVLDFEDLIINTNDLLKKRD 164
              +++   +++ F +        +        YE+ K     LD+ DL       L    
Sbjct: 195  KALKEEKKSWQEFINVYDEYRKYQDFIDAWKSYEDKKSSINALDYGDLNYIALQYLDTYG 254

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                   +++    +I++DE QDT+ +Q+E+I+ LT             + +  V D  Q
Sbjct: 255  T-----EELNDTYRYIVVDEFQDTNYLQFELIKRLTA----------REQNVTIVADPNQ 299

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            SIY+F GA    +   K+       +      I+ + +S+RST  IL V  ++     + 
Sbjct: 300  SIYAFRGAYTDNIEEFKKQYDIHEDD------IVAIDVSYRSTNKILRVSHELIQNNYS- 352

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                +  +  I  ++    +   V + E +  + +++   +   W +   +  +      
Sbjct: 353  ---DDRKSECILLKNHEDNEGDNVVIQETLDDKEEARKIAEMVDWCAEEGTPLE------ 403

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
                                          DI VL R      ++    +         V
Sbjct: 404  ------------------------------DIAVLYRTHSQGRVVKDTLQ----RRGFPV 429

Query: 405  VGNDRFILTDHLAIKDLMALGRFILS-----QEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
               +         IK  +A    + +          S+   L     +    D  KI   
Sbjct: 430  SVKENTDFLKLPEIKTALAYLYVLNNFTHPTPRGTESWWR-LFHYNNSLDRSDSIKIAEY 488

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC------SPHDFFTLILGAKKG 513
                 T ++ +       +      ++ I+ +                D    I      
Sbjct: 489  IKNNRTTFQDVIYHHLDELGISDRGLEIINSVKQSIAKLFEKTIYDISDLLLEIYDYTGL 548

Query: 514  RQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA--- 567
             +QF         +    L +        EQ     L   I+ LE          +A   
Sbjct: 549  VRQFSGSDTIRNREALLNLRKLYENAETFEQMHDRDLSGFIAYLEILDEMDGNPSAANIT 608

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            + N V +MT+H+AKGLE   VF+++     F  K   K  ++P    +    I+     S
Sbjct: 609  DDNAVNLMTIHSAKGLEFDTVFVINMADNRFPLKRGGKEPLIPYELMEQYRDIFESDFSS 668

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
               +   +    K+   EE  RL YV  TRA + L++      +          YD+ +D
Sbjct: 669  EKELNKAIDARKKQLKIEEERRLCYVAFTRAKNHLVLTFSDEYNGSDSGPSDFLYDIGFD 728

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE-------------------- 727
                D             +++                 RE                    
Sbjct: 729  ESFEDCDTLDDVTFYRDTENKAKELVMDDDIEREKQRRRELLMDSMGSGNITEPLKHLLV 788

Query: 728  -----ETIKQLMDEQKIPKKLFSPIKNDINEP-----------------YILNPSTIDTK 765
                     +   E+            + +E                     + S+I T 
Sbjct: 789  YQELVNKEDRDYLEEIKSNWSKINPLPEASEILDSCKSSKCSPKFKPDNLSFSYSSIKTY 848

Query: 766  GKTNLESLLSDN------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
             +   +  L +             +  N G  +HK+L+    +   ++            
Sbjct: 849  EECPKKYELQELLRMPDRSSEKLGEAANIGSFVHKVLE----IGVKRKVETKDQLYNIVY 904

Query: 814  KLWPAKEYKNL-LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
            +L    ++K + L     L +            +   +V  + + P       G ID++ 
Sbjct: 905  ELAEKPDWKMIDLKKTYTLFDT--FWERHKDKIHYNFAVEKRFSVPIGGFYFKGFIDRVD 962

Query: 873  IS---QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
                   ++ + +YK     P   +        QL +Y       YP  ++ 
Sbjct: 963  FLSGCDTDVEVIDYKAGKTDPPTEDR-----ARQLLLYAYGFNYLYPEYTVR 1009


>gi|169796934|ref|YP_001714727.1| ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
 gi|184157156|ref|YP_001845495.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii ACICU]
 gi|213156663|ref|YP_002318324.1| ATP-dependent DNA helicase [Acinetobacter baumannii AB0057]
 gi|215484396|ref|YP_002326627.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB307-0294]
 gi|239503180|ref|ZP_04662490.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB900]
 gi|260555776|ref|ZP_05827996.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ATCC 19606]
 gi|294839617|ref|ZP_06784300.1| ATP-dependent DNA helicase rep [Acinetobacter sp. 6013113]
 gi|294842991|ref|ZP_06787674.1| ATP-dependent DNA helicase rep [Acinetobacter sp. 6014059]
 gi|294859836|ref|ZP_06797605.1| ATP-dependent DNA helicase rep [Acinetobacter sp. 6013150]
 gi|301348256|ref|ZP_07228997.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB056]
 gi|301512392|ref|ZP_07237629.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB058]
 gi|301597490|ref|ZP_07242498.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB059]
 gi|169149861|emb|CAM87752.1| ATP-dependent DNA helicase [Acinetobacter baumannii AYE]
 gi|183208750|gb|ACC56148.1| Superfamily I DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|193076634|gb|ABO11317.2| ATP-dependent DNA helicase [Acinetobacter baumannii ATCC 17978]
 gi|213055823|gb|ACJ40725.1| ATP-dependent DNA helicase [Acinetobacter baumannii AB0057]
 gi|213987021|gb|ACJ57320.1| ATP-dependent DNA helicase rep [Acinetobacter baumannii AB307-0294]
 gi|260410687|gb|EEX03985.1| ATP-dependent DNA helicase Rep [Acinetobacter baumannii ATCC 19606]
 gi|322507053|gb|ADX02507.1| ATP-dependent DNA helicase [Acinetobacter baumannii 1656-2]
 gi|323516920|gb|ADX91301.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 679

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 215/632 (34%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ I      +T +  +          +L   YE  
Sbjct: 127 RDNLSGAESKELIAKAMKKISDWKNDLILPEQAHSTCETPEDVQ-----FAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQEN---AEVRDKWQNRVRYLLVDEYQDTNTAQYILVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   K+              II+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLKQDFPN--------LHIIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  ++   +  ++D 
Sbjct: 281 EQNYRSTSRILKAANCVIQNNPHIFDKKLWSDK------------GHGEVIRIITCRNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A R+   + +++    +           KD  VL 
Sbjct: 329 D-----------------------EAERV---VKDLLTHKLMNGK------NWKDYAVLY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARVLETQLRQMQ----IPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHEL-I 492
           + +P        + K+    +    ++                  ++      +I     
Sbjct: 413 INTPKRAIGPVTLEKLGLFAQENNLSLLGASSDQRLSMVLPKKAETQLHEFADFISTFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFL----NFTLRNEQNS 543
            + +   P      ++           +           D ++       N   R E   
Sbjct: 473 ELLEDDEPVPKVRQMMNEAGYIDYIREQSATPAQEKSKLDNIENLFSSIQNLINRAEDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I +L       ++    + ++V ++T+H AKGLE P V+++    ++  HK+ 
Sbjct: 533 EKNIESVIRKLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPYVYIMGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IAAETIEEERRLMYVGITRARQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   ++   
Sbjct: 618 LTLAEQRKNGGQMKQMTPSRFLDELPQDELEW 649


>gi|224823785|ref|ZP_03696894.1| ATP-dependent DNA helicase Rep [Lutiella nitroferrum 2002]
 gi|224604240|gb|EEG10414.1| ATP-dependent DNA helicase Rep [Lutiella nitroferrum 2002]
          Length = 672

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 103/694 (14%), Positives = 212/694 (30%), Gaps = 122/694 (17%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                +  + K ++ +   G       +  +Q   Q           S            
Sbjct: 62  AAREMLERVTKLMTPAEVRGLTVSTFHSLGMQILRQEAPHLGYKPQFSILDAYDAGKIIS 121

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
           +++      +   ++ ++   +++F    +     +          +       Y++   
Sbjct: 122 DLLRTTAKDEVRKVQSQISLWKNDFKSAEEALTLAE-----NEWERICATTYLAYQDTLT 176

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               +DF+DLI    +L +  +    +  K   ++ ++L+DE QDT+  Q+++++ LT  
Sbjct: 177 AYQAMDFDDLIRLPVELFRNNEE---VLQKWQHKLRYLLLDEYQDTNTCQYQLVKLLTG- 232

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                          AVGD+ QSIY++ GA  + +   ++   K          II+L  
Sbjct: 233 ---------VRGMFTAVGDDDQSIYAWRGANMENLRLLQQDFPK--------LKIIKLEQ 275

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RSTA IL   + V S           S   +                           
Sbjct: 276 NYRSTARILRAANSVISNNPKLFEKQLWSELGL--------------------------- 308

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             +        D           A  +            + ++  +   + KD  +L R 
Sbjct: 309 -GEPIHVIRCKD-------EEHEAEVVVQR---------LLAHKFECRTEFKDYAILYRG 351

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                +     R    + +I    +      D   +KD++A  R I + +DD +F+  L 
Sbjct: 352 NYQARIFEQALR----NQRIPYQMSGGQSFFDKAEVKDVIAYMRLITNPDDDPAFIRALT 407

Query: 443 SPLFNFSEDDIFKICTQR-HETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIA 495
           +P        + K+        ++++    +        +  +        +I+ L + A
Sbjct: 408 TPKRGVGAGTLEKLGAWAGERKKSLFAAAYEEGFRLQVQHAQLEPLTQFCDFINHLQYRA 467

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRNEQNSYSSLQEL 550
                 +    +L A            +          + E + +  R  +    +L EL
Sbjct: 468 LREPAGELAQEMLKAIGYETWLYDSEDSPRAAETKWKNVQEMVAWLARKGEADNKNLIEL 527

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              +        R      + V + T+H +KGLE P VFLV     +  H          
Sbjct: 528 TQLIALITMLEGRD-EGELDAVHMSTLHASKGLEYPHVFLVGCEEGILPHS--------- 577

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                     + ++    EE  RL+YVG+TRA   L +      
Sbjct: 578 --------------------------ESVENGMIEEERRLMYVGITRAQRSLTLTHCVKR 611

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
               +         + +   +D R         +
Sbjct: 612 RRAGEWQFVDPSRFIDEINGDDLRHFGKPGAEPV 645


>gi|229524317|ref|ZP_04413722.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis
            VL426]
 gi|229337898|gb|EEO02915.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis
            VL426]
          Length = 1208

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 125/893 (13%), Positives = 259/893 (29%), Gaps = 134/893 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    +      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   L   +            L  +GD K
Sbjct: 366  DEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLGY--------PQCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP---QSKADYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L     
Sbjct: 521  QMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAIASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLTESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++          +        D 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTGNEDA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------ 683
            +    +    E  RLLYV +TRA     I      +        + +             
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 684  --------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                     +     N   V +        +                  +  +   ++  
Sbjct: 851  GGIEDLRQALLKQCENLPDVAQCAPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTS 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLII 786
               +  +      + + E  +L     D       +    +          +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +        +           ++   ++    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAHSEPNTKIILDLMESEQIESEWLPVLQQLVDTVLSTPLDGKALRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            Q   ++ ++K++H       + P           +  Q  IY   L     ++
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|302669040|ref|YP_003832865.1| ATP-dependent DNA helicase UvrD/REP family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302397380|gb|ADL36283.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 643

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 99/598 (16%), Positives = 179/598 (29%), Gaps = 119/598 (19%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK--STLASLTLAKYLNAHYEEAKKKN 144
           ++I K     KE + +  D   + +D+       +     +     K +   Y+   K +
Sbjct: 121 KKIVKNKGFEKELVSQFADMISRAKDKLLEPSDIEVYEQGSVYDQFKQVYYAYQAGLKND 180

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++DF+DLI+    L +    +            ++++DE QDTS  Q+E++R L + + 
Sbjct: 181 NMVDFDDLIMKPVQLFRSNPAA---LNWYQDHYRYLMVDEYQDTSHSQFELVRLLADKY- 236

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                    + +  VGD+ QSIY F GA+   +L  K                + +  ++
Sbjct: 237 ---------KNICVVGDDYQSIYGFRGADISNILNFKNHYPSAY--------TVTIGQNY 279

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST  I+     V     +       S                             Q N 
Sbjct: 280 RSTHVIVNAAAAVIENNPDQLKKKLCSM----------------------------QDNG 311

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                 +  D   +       A  +A  I   +              Q K+  VL RK  
Sbjct: 312 IPIPVHAADDDRDE-------ANFVANKIMKALDKGR----------QPKEFAVLYRKNA 354

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL--SQEDDLSFVCMLK 442
            +  I      L     I               IKD++A  + +      D ++   ++ 
Sbjct: 355 FSRSIEDALMHL----HIPYRIFGGLSFYQRSEIKDMVAYLKLLDVEGSGDRIALERVIN 410

Query: 443 SPLFNFSEDDIFKIC--TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            P     +  I  +    ++ +  +    +       +  F    + I  L   A+    
Sbjct: 411 VPKRGIGQAKIKMLDEIAEKADDNSFNVAMTAPEFDKVKGFISFREAIKTLQESAKELPL 470

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVID--------VLDEFLNFTLRN--EQNSYSSLQEL 550
            +    I          +        +         + E  N       E    S  + L
Sbjct: 471 DELILKISEVTDYPTYLMQGKSKSDDEDEVKKRMLNISELANKANEYIKEHEDMSKEELL 530

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            + L        +  + + N V +MT+H +KGLE   VF++      F        + + 
Sbjct: 531 STFLADIALLTDQDMAKDDNVVSLMTMHRSKGLEFEYVFIIGCEEGCFPDDPPYMGNTLD 590

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                             +E  RL YVGMTRA   L +    
Sbjct: 591 ---------------------------------VQEDRRLCYVGMTRAKKVLFMTYSK 615


>gi|113954443|ref|YP_729463.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311]
 gi|113881794|gb|ABI46752.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311]
          Length = 803

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 112/633 (17%), Positives = 212/633 (33%), Gaps = 99/633 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L+  +   Y +A   N  LDF+DL++    LL++ +    +R    +   H+L+DE QD
Sbjct: 202 KLSADVYRRYRKALAANNALDFDDLLLLPVRLLQQNE---QVRGYWFRRFRHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  D    +     S R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYELIKLLVTDGKEPQQVDDWSGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +A +   + ++++L  ++RSTA IL   + + S            T              
Sbjct: 319 KAPDDVTR-TMVKLEENYRSTATILEAANALISNNSERIDKVLRPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  S T   D + +       A  + + +  M          
Sbjct: 365 ---------------GEGELISLTRCDDEIAE-------AEAVVHRMRMM--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +  KD+ VL R    +  I          ++I  V        D   IKDL+   R
Sbjct: 395 ANPDLSWKDMAVLYRTNAQSRAIEESL----VRWRIPYVVVGGLRFYDRREIKDLLGYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  I ++    ++    ++      E ++        
Sbjct: 451 LLINPADTVSLLRVINVPKRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAR 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + I+ +       +P +    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCELINSMKERIHAATPSELIQEVMEKSGYVSELIADGSDEAEERRRNLQELVNAG 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N    L+  ++          +      + V +MT+H++KGLE PVV LV    
Sbjct: 571 LQYQEENEEGDLEGFLASAALASDADSKD--TAADRVTLMTLHSSKGLEFPVVCLVGLEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L I   S         +     +             +  +           E  
Sbjct: 655 TRAKERLFISHASERRLWGGMREPAMPSVFLSELPEGLVQGDVPQSGGAALRREQRLERL 714

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
           T    +                 + ++   P  
Sbjct: 715 TRVDRDDSRRVASGGASGAPANAVRRRQAGPAP 747


>gi|313681637|ref|YP_004059375.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313154497|gb|ADR33175.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 682

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 104/591 (17%), Positives = 200/591 (33%), Gaps = 126/591 (21%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           + D    Y   + T         +   YE    KN ++DF+DL+  T  LL +      +
Sbjct: 144 LIDPEEAYAQAELTNYKH--IAKIYEEYEAYLLKNNLVDFDDLLCLTYKLLDENPD---L 198

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             +  ++  +I+IDE QDT+ +Q  +++ L           ++   L  VGD+ QSIY +
Sbjct: 199 CAQTSEKYRYIMIDEYQDTNELQLRLLQKLC----------TTHNNLCVVGDDDQSIYGW 248

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + +L   +              +++L  ++RST  ILTV + +     +  G + 
Sbjct: 249 RGAHVRNILEFDQDF--------ADAMVVKLEHNYRSTQPILTVANALIEHNRSRLGKTL 300

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            +T                                 +    +  D   +        ++I
Sbjct: 301 IATK----------------------------TGGDEVQTITSNDESEES-------QKI 325

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I  +I             ++  +I VL R    +  +        N   ++      
Sbjct: 326 AKAIKELISKG----------VRPNEIAVLYRINALSRSLEEGL----NRTGVAYKLVGG 371

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               D   IKDL++  R I +  D+ S   ++  P     +  I KI  +     ++++E
Sbjct: 372 LRFYDRAEIKDLISYLRVITNVHDNFSLKRIINKPKRGLGKATIDKIELSSIEAGKSMFE 431

Query: 469 YIQKFANCGIS---------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           +I   ++  +          + +  +  I EL       + + F  L+    K ++    
Sbjct: 432 FISTLSDSDLEGLVRKKSAGELRDFVAEILELR-RVSEEAIYRFIDLLEERFKIKETLKG 490

Query: 520 RFGN-EVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                E I  +DEF        +QN  +SL E ++++                 + IM++
Sbjct: 491 LPDEAEKIANVDEFYGLFRDYVKQNPEASLAEFLNDITLQSE----QDQVEGESIYIMSI 546

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE   +F++                                              
Sbjct: 547 HASKGLEFEHLFVIGLEEGFLP-------------------------------------L 569

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
               S  EE  RL YV +TRA   L +   ++   + +         + ++
Sbjct: 570 IGDGSDLEEERRLGYVAITRAKSNLTLSNVNSRFYKGRRTDLQKSRFINEA 620


>gi|223042143|ref|ZP_03612314.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
 gi|223017082|gb|EEF15523.1| ATP-dependent DNA helicase [Actinobacillus minor 202]
          Length = 672

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 97/554 (17%), Positives = 196/554 (35%), Gaps = 121/554 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +  +    Y+   +    LDF+DLI+    L ++   +     +  Q+I ++L+DE QD
Sbjct: 162 RVFSHFYQLYQNQLRAYNALDFDDLIMLPVLLFRQFPEAK---ARWQQKIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+I+ +                   VGD+ QSIYS+ GA+P+ + R +      
Sbjct: 219 TNTSQYELIKLIVG----------KEANFTVVGDDDQSIYSWRGAKPENMQRLREDF--- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + +    ++       S      + +       
Sbjct: 266 ------DLKVIKLEQNYRSSQRILHCANILIDNNDHIFQKRLFSQLGEGEKLN------- 312

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                       + +  +    A RI            + ++  
Sbjct: 313 ----------------------------VIEAKNEEHEAERIV---------GELIAHRF 335

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +  + KD  +L R    + L+      L    +I    +          IKD+MA  R 
Sbjct: 336 SKKTKYKDYAILYRGNHQSRLLEK----LLMQNRIPYKISGGTSFFARAEIKDMMAYLRL 391

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISK 480
           +++Q+DD +F+ ++  P        + K+      +  +++E       IQ+        
Sbjct: 392 LVNQDDDAAFLRIVNVPKREIGAATLEKLGQLANEKHISLFEAIFDFELIQRLTPKPYQA 451

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF--------ISRFGNEVIDVLDEF 532
            Q+   +I ++   A+   P +    +L   +              +   ++ ++ L E+
Sbjct: 452 LQNFAHWIVKIADQAERADPLEAVKDLLSHIQYEAYLYETATSPKAAEMQSKNVETLFEW 511

Query: 533 LNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           +   L  ++     +L ++++ L       +       ++V++MT+H +KGLE P VFL+
Sbjct: 512 VQSMLEGDELEEPMTLVQVVNRLTLRDMLERSEEDDEADQVQLMTLHASKGLEFPHVFLI 571

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  H+                                       +   EE  RL 
Sbjct: 572 GMEEGILPHQTSLD-----------------------------------EDNVEEERRLA 596

Query: 652 YVGMTRASDQLIIC 665
           YVG+TRA   L   
Sbjct: 597 YVGITRAQQTLTFS 610


>gi|90581490|ref|ZP_01237284.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
 gi|90437351|gb|EAS62548.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14]
          Length = 671

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 105/671 (15%), Positives = 215/671 (32%), Gaps = 135/671 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+ +      +++ +LL    LT+        + +++     + K  +    D     R 
Sbjct: 101 LKASFSLFDDQDQMALLKE--LTEDELEGDKDLLKQLMSSISNWKNDMLSPADATAHARS 158

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
             +             L  +    Y+   K    LDF+DLI+    LL+     A +R  
Sbjct: 159 ERD------------QLFAHCYEMYQRQMKAYNALDFDDLILMPVLLLRDN---AEVRKH 203

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
               I ++L+DE QDT+  Q+  ++ L  +                VGD+ QSIYS+ GA
Sbjct: 204 WQNRIRYLLVDEYQDTNTSQYLFVKLLVGE----------RARFTVVGDDDQSIYSWRGA 253

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +P+ +    +              +I+L  ++RST+ IL   + + +   +    +  S 
Sbjct: 254 QPENLGLLNKDFP--------SLKVIKLEQNYRSTSRILRTANILIANNPHLFEKALFSE 305

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                                                      +    +    A ++   
Sbjct: 306 IP-----------------------------------DGAMLKVITAKNEEHEAEKV--- 327

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  +I    + +         KD  +L R    + L            +I    +     
Sbjct: 328 IGELIAHRFMNNTA------YKDYAILYRGNHQSRLFEKSL----MQNRIPYKISGGTSF 377

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
                IKD+MA  R + + +DD +F+ ++ +P        + K+        ++++    
Sbjct: 378 FSRSEIKDIMAYLRLLTNLDDDNAFLRIVNTPRREIGPVTLEKLGTYANMRGKSLFAASF 437

Query: 472 KFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----R 520
           +               Q    ++++L   A+          ++                +
Sbjct: 438 EMGLEQHLSGRGLESLQRFTHWVNQLADNAERGDTVAAVRQLVRDIHYEDWLYETSPSPK 497

Query: 521 FGNEVIDVLDEFLNFTL-----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                +  + +  ++        N  N   +L+E++  L       +     + ++V++M
Sbjct: 498 AAEMRMKNVSDLYSWITADLEGDNYDNEEKTLKEVVQRLTLRDMMERGEDDDDADQVQLM 557

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE P VFLV T   +  H+                                  
Sbjct: 558 TLHASKGLEFPYVFLVGTEEGILPHQTSID------------------------------ 587

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                +   +E  RL YVG+TRA  +L            +  +      +Y+   +D   
Sbjct: 588 -----EENVDEERRLAYVGITRAQRELTFTLCKERRQYGELIKPEPSRFLYELPQDDLEW 642

Query: 696 KKIKLTNSINK 706
           +  +   S  +
Sbjct: 643 ESERKPVSAEE 653


>gi|262404646|ref|ZP_06081201.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586]
 gi|262349678|gb|EEY98816.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586]
          Length = 1208

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 124/893 (13%), Positives = 258/893 (28%), Gaps = 134/893 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    +      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   L   +            L  +GD K
Sbjct: 366  DEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLGY--------PQCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVNAHYT----------LGTNWRSSAAMVAAVNQVFSSATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP---QSKTDYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L     
Sbjct: 521  QMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++          +        + 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDAESATTWVDLTGNEEA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------ 683
            +    +    E  RLLYV +TRA     I      +        + +             
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 684  --------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                     +     N   V +        +                  +  +   ++  
Sbjct: 851  GGIADLQQALLKLCENLPDVAQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTS 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLII 786
               +  +      + + E  +L     D       +    +          +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +        +           ++    +    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAHSEPNTKIILDLMESEQIETEWLPVLQQLVDTVLSTPLDGKVLRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            Q   ++ ++K++H       + P           +  Q  IY   L     ++
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|91775555|ref|YP_545311.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT]
 gi|91709542|gb|ABE49470.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT]
          Length = 690

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 95/614 (15%), Positives = 190/614 (30%), Gaps = 116/614 (18%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                +       A  +   Y++  K    +DF+DLI    +L ++   +     K   +
Sbjct: 172 QAAALADEELSHAAAKVYQVYQQTLKAYQAVDFDDLIKLPVELFEQHPDA---LRKWQHK 228

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           + ++LIDE QDT+  Q+++++ LT                 AVGD+ Q+IY + GA+ + 
Sbjct: 229 LKYLLIDEYQDTNACQYKLVKMLTG----------VEGRFTAVGDDDQAIYGWRGADVEN 278

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           + +      +          +I+L  ++RST  IL   ++V +                 
Sbjct: 279 LRQLTEDFSR--------LKVIKLEQNYRSTVRILRAANQVIANNPKLFEKK-------- 322

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW ++                     +         A  +       
Sbjct: 323 -------------LWSELGMGD--------------LIQVSAAKDEEHEAESVVMK---- 351

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                + ++  +   +  D  +L R      +     R     +KI    +      D  
Sbjct: 352 -----LLAHKFEHRTKFLDYAILYRGNHQARIFEQQLR----QHKIPYTISGGQSFFDKA 402

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK--- 472
            IKDL++  R I +++DD +F+    +P        + ++         +++E   +   
Sbjct: 403 EIKDLVSYLRLIANEDDDPAFIRAATTPKKGIGNTTLERLGEYASAHKMSLFEAAFEGDF 462

Query: 473 ---FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV- 528
                N  +       ++I+ +   A+     +    +L A                +  
Sbjct: 463 QRTMGNRQLEDLLTFCQFINRIQVRAEKDPAGEVLNDLLNAINYEAFLYDTEEPRSAENK 522

Query: 529 ---LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              + +F+ +  R       +L  L   +        R      + V++ T+H +KGLE 
Sbjct: 523 WKSVLDFVGWLTRKGDEDEKNLLALTQMISLMSMLEGRE-DEEPDAVKLSTLHASKGLEY 581

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VFLV     +  H                                    + + +   E
Sbjct: 582 GHVFLVGCEEGILPH-----------------------------------RESVDQGKIE 606

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL+YVG+TRA   L I          +         + +    D R      ++   
Sbjct: 607 EERRLMYVGITRAQKSLHISWCRKRKRAGEFESCEPSRFIAELPEEDVRHSGQPQSDPAA 666

Query: 706 KDEWIAYEWSTHHP 719
             E      +    
Sbjct: 667 SKENARQRMAQIRA 680


>gi|297580957|ref|ZP_06942882.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385]
 gi|297534783|gb|EFH73619.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385]
          Length = 1208

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 134/893 (15%), Positives = 267/893 (29%), Gaps = 134/893 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    Y      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFERIEAFLAEPVSLKTPLLVHAIHYCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   L  D+            L  +GD K
Sbjct: 366  DEQGLLGERIRALYPVAMIDEFQDTDPLQYSIFSRLYLDY--------PQCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP---QSKTDYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKRV--IQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L     
Sbjct: 521  QMAEACAAQIQHILTASVSGAATFHRGESIEAGDLAVLVRTGNEARMVRD---ALSQQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++          +        D 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDAESATTWVDLTGNEDA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
            +    +    E  RLLYV +TRA     I      +        + +         D + 
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI-------- 747
              I+        +          P     E+     QL + +   ++L   I        
Sbjct: 851  GGIEDLRQALLKQCENLPDVAQCPPPKRFEQAYQPPQLDERELSARELSQAIDRRWRVTS 910

Query: 748  --------------KNDINEPYILNPSTIDTKGKTNLESLLS-------DNQTFNRGLII 786
                                   +    +D+  + +  +L S         +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQEFPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +      + +           ++   A+    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAQSEPNTKIILELMESEQIEAEWLPVLQHLVDTVLSTPLDGKALRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            Q   ++ ++K++H       + P           +  Q  IY   L     ++
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|166157034|emb|CAO79491.1| putative UvrD/REP helicase [uncultured candidate division WWE3
           bacterium EJ0ADIGA11YD11]
          Length = 710

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 118/634 (18%), Positives = 213/634 (33%), Gaps = 93/634 (14%)

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFN-TYK 118
              +++ LL       K    + +    +          +L+       ++ +    +  
Sbjct: 116 SPSDQWLLLRKNLFDLKLKYFRPLGNPTKFISAILTFISRLQDENVSPEELLEFVKHSNY 175

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                        Y+ + YE  K ++  +DF +LII    LL    V   I  +   +  
Sbjct: 176 TSDEEKQRWEELSYIYSEYERLKIESSAMDFGNLIIWVIKLLN---VRPNILAEYKNQFK 232

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HIL+DE QDT+  Q+E+I+ L    F  K T  S R+L  VGD+ QSIY F GA    +L
Sbjct: 233 HILVDEFQDTNYAQYELIKLL----FPTKETKESERSLLVVGDDSQSIYKFRGAAVSNIL 288

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
           +             +   +I L  ++RST +IL    K+                     
Sbjct: 289 QFMEDY--------KDSKMITLLKNYRSTQEILDAAYKLIQNNN---------------- 324

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                           +              +     + Q  +       +   I  ++ 
Sbjct: 325 -------------PDTLESKLGISKKLIGINSGSNPKILQTETLEDEVELVISKILEILA 371

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +             KD  +L R            R     Y +         L D   +
Sbjct: 372 KEPQ--------YTYKDFAILARANNHLDPFVMALR----KYGLPYQLVGNRGLYDRDEV 419

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKFANCG 477
           +D++A  R I++ +D ++   +L          +I   +   R+E   ++E ++K     
Sbjct: 420 RDILAFLRVIINTQDGINLYRVLNIESLEIPYKEISELLSKSRYEKTDLWEQVKK---SK 476

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLN 534
             K   ++K I          +P +    ++ +     QF+     E       L+ FL 
Sbjct: 477 DEKVAFLVKTIEGFQKNITKNTPTEMVFEVVNSTNYLNQFLEEETIENELCIKNLNLFLQ 536

Query: 535 FTLRN------EQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              +       E     ++  L+  L+   +      +A   + + + +MTVH++KGLE 
Sbjct: 537 RVQKFEVDYHNETGEMPTVVNLVDYLDMIIEAGENPAQAEIEDIDTINLMTVHSSKGLEF 596

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVF+V+  S  F  ++      +P       +P                         +
Sbjct: 597 PVVFMVNLVSGRFPTRNQGDTIEVPEELIKETLPTGN-------------------EHIQ 637

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
           E  RL YVGMTRA   L +    N   ++ +   
Sbjct: 638 EERRLFYVGMTRAQKYLFMTLGKNYGGKRDTIPS 671


>gi|163794460|ref|ZP_02188431.1| UvrD/REP helicase [alpha proteobacterium BAL199]
 gi|159180184|gb|EDP64707.1| UvrD/REP helicase [alpha proteobacterium BAL199]
          Length = 798

 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 105/674 (15%), Positives = 211/674 (31%), Gaps = 136/674 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + + P            ++  +         +   L+        +++  
Sbjct: 91  ASREMKERVARIVGPAAEQVWLGTFHALAARIL----RRHAEVVGLRSNFTILDADDQVR 146

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL      +    ++          +  +   +++ +D  +             +     
Sbjct: 147 LLKQVLQAEDIDDKRWP--------ARVVMGVIQRWKDRGLGPEKIGVAEVGDLAGGRL- 197

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              + +   Y+E        DF DL+++   L +       I     +   ++L+DE QD
Sbjct: 198 ---QEVYRQYQERLVTQNAADFGDLLMHNLTLFQS---RPEILKDYQERFRYLLVDEYQD 251

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T++ Q+  +R L +          S + +  VGD+ QSIY + GAE   +L+ +      
Sbjct: 252 TNVSQYLWLRLLAQ----------SHKNICCVGDDDQSIYGWRGAEIGNILKFESDFP-- 299

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   +++ L  ++RST+ IL    +V +  E   G +                   
Sbjct: 300 ------GATVVRLEQNYRSTSRILAAASQVIANNEGRLGKT------------------- 334

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW           +  +      +D   +       AR +   I           + +
Sbjct: 335 --LW-------TEGDHGDKVVVRGVWDGEEE-------ARVVGDRI----------EDFQ 368

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           ++ +   D+ VLVR    T         L     +           +   I+D +A  R 
Sbjct: 369 RKSVALSDMAVLVRAGFQTREFEERLITL----GVPYRVVGGARFYERKEIRDAVAYLRV 424

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISK 480
           I   +DD++F  ++  P     +  +  +    R +  ++           +  +     
Sbjct: 425 INQPDDDMAFERIVNVPRRGIGDTTMRAVHGYARAQGLSLTRAVDALVQTDELPSAARRN 484

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
            + ++         AQ     D    +L      +        E    ++ L E +    
Sbjct: 485 LRTLMDAFGRWREAAQVEGLADLVRAVLDESGYTESLQKDRSPEAPGRLENLKELVTALE 544

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E         L   LE     ++ A   +  ++ +MT+H AKGLE  VVFL      +
Sbjct: 545 EYET--------LAGFLEHISLVMENADDPDEAKISLMTLHAAKGLEFDVVFLPGWEEGL 596

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F ++                                  +     +  EE  RL YVG+TR
Sbjct: 597 FPNQR--------------------------------ALDENGAAGLEEERRLAYVGLTR 624

Query: 658 ASDQLIICKHSNTS 671
           A   + I   +N  
Sbjct: 625 ARKSVEIVFAANRR 638


>gi|9257172|pdb|2PJR|A Chain A, Helicase Product Complex
 gi|9257173|pdb|2PJR|F Chain F, Helicase Product Complex
          Length = 548

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 91/588 (15%), Positives = 188/588 (31%), Gaps = 100/588 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V+  N             + ++ Q+L   +        
Sbjct: 32  GAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWIST 91

Query: 66  FSLLSSFFLTQKFTP-------------------QKNIITQEINKKSPDLKEKLKKSQDE 106
           F  +    L +                       +  +  + I+ K  + +  L      
Sbjct: 92  FHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAA 151

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++       K  +++     +   +   Y++   +N  LDF+DLI+ T  L  +    
Sbjct: 152 KNELLPPEQFAK--RASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDR---V 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             + +    +  +I IDE QDT+  Q+ +++ L E F          + + AVGD  QSI
Sbjct: 207 PDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF----------QNICAVGDADQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + +L  +R              +I L  ++RST  IL   ++V     N + 
Sbjct: 257 YRWRGADIQNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                                 +   +    +   +       A
Sbjct: 309 KRIW----------------------------TENPEGKPILYYEAMNEADE-------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +A  I   +              + +D  VL R    + ++  +         I    
Sbjct: 334 QFVAGRIREAVERGER---------RYRDFAVLYRTNAQSRVMEEML----LKANIPYQI 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
                  D   IKD++A  R I + +DDLS + ++  P        I K+         +
Sbjct: 381 VGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELS 440

Query: 466 VYEYIQKFAN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++E + +                    + +   + ++ S  +    +L     R+   + 
Sbjct: 441 LFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAE 500

Query: 521 FGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRA 564
              E     + LDEFL+ T   E  +   SL   +++L       +  
Sbjct: 501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELD 548


>gi|294142626|ref|YP_003558604.1| ATP-dependent DNA helicase Rep [Shewanella violacea DSS12]
 gi|293329095|dbj|BAJ03826.1| ATP-dependent DNA helicase Rep [Shewanella violacea DSS12]
          Length = 670

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 101/575 (17%), Positives = 197/575 (34%), Gaps = 122/575 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   L A Y +  K    LDF+DLI+    +L+     A +R +    I ++L+DE QD
Sbjct: 162 QLFAALYARYAQHMKAYNALDFDDLILIPTLILRHN---ADVRARWQTRIQYMLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L  D                VGD+ QSIYS+ GA P+ ++         
Sbjct: 219 TNTSQYEMVKLLVGD----------RARFTVVGDDDQSIYSWRGARPQNLVLLGEDFPA- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +    +  S           G+   
Sbjct: 268 -------LRLIKLEQNYRSSQRILKAANILIANNPHVYEKTLFSELPY-------GEPLR 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V +                             ++    A R+   I+ MI          
Sbjct: 314 VLI----------------------------AANEEQEAERV---IAEMIRH------KF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q  D  +L R    + L+           +I    +          IKD+MA  R 
Sbjct: 337 MGKTQFGDYAILYRGNHQSRLLERSL----MTNRIPYKLSGGTSFFGRAEIKDIMAYLRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISK 480
           +++ +DD +F+ ++  P        + ++         +++E               ++ 
Sbjct: 393 VVNPDDDNAFLRVVNLPKRGIGPSTLERLGTFANERQISMFEASFDPELNHHLPPAAMAS 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNF 535
                K+I +         P +    ++               ++     +  + E   +
Sbjct: 453 IYKFGKFIVDTGETVTRGEPIEAIKHLIRNINYEDYLYETSTSAKAAEMRMKNISELYRW 512

Query: 536 TLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                   + +   +L E+++ L       + +     ++V++MT+H +KGLE P VF+V
Sbjct: 513 VTEMLEGDDLDEGMTLPEVVTRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPYVFMV 572

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            T  ++  H+                                       +   +E  RL 
Sbjct: 573 GTEERILPHQSSID-----------------------------------EDNVDEERRLA 597

Query: 652 YVGMTRASDQL--IICKHSNTSNEKKSNQRTWYDM 684
           YVG+TRA  QL  ++C+      E    + + + +
Sbjct: 598 YVGITRAQQQLWFVLCRERRQFGETMRCEPSRFLL 632


>gi|198275887|ref|ZP_03208418.1| hypothetical protein BACPLE_02062 [Bacteroides plebeius DSM 17135]
 gi|198271516|gb|EDY95786.1| hypothetical protein BACPLE_02062 [Bacteroides plebeius DSM 17135]
          Length = 784

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 100/690 (14%), Positives = 200/690 (28%), Gaps = 127/690 (18%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L ++     ++ +     K+         L   +   Y    +++  +DF+DL++ T  
Sbjct: 152 VLPEAYAANAELIEADRAAKVP--------LLHEIYLRYWNRCRQSDAMDFDDLLLYTYL 203

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           L +       I  K      +IL+DE QDT+  Q  ++  LT+            + +  
Sbjct: 204 LFRT---RPDICDKYAARFRYILVDEYQDTNFAQHSIVLQLTQ----------KHQFVCV 250

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD+ QSIYSF GA    +L   R          +   + +L  ++RST  I+   + + 
Sbjct: 251 VGDDAQSIYSFRGANIDNILNFTRTY--------KDARLFKLEQNYRSTQTIVNAANSLI 302

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +   +       S                             +   +     + +  + +
Sbjct: 303 AKNRDQIQKEVFS----------------------------EKDKGEPIGVFAAYSDVEE 334

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                     +   I+ +                  D  +L R    + +     R    
Sbjct: 335 G-------EIVTNKIAQLHAKS---------GYAYHDFAILYRTNAQSRIFEEALR---- 374

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I               +KD++A  R  ++  D+ +F  ++  P        + K+  
Sbjct: 375 KRSIPYRIYGGLSFYQRKEVKDVVAYFRLAVNPHDEEAFKRVINYPARGIGNTTLGKLTE 434

Query: 459 QRHETE-TVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                E +++        Y  +      +K Q     I E + +A+    +     ++  
Sbjct: 435 AAGRCEVSLWKVLCEPLSYGVELNKGTYTKLQGFRDLISEFVTLAREQDAYTLGMELVKR 494

Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNE---QNSYSSLQELISELEQYPPTIKRA 564
                +       E     + ++E +N         Q   +    L   L +      + 
Sbjct: 495 SGIMAEIYQDRSPENMSRQENIEELVNGMRDFCDGRQEEGNPHVLLSDYLSEIALLTDQD 554

Query: 565 HS--ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   +V +MT+H+AKGLE P VF+V     +F                        
Sbjct: 555 EEQGEAQPKVTLMTIHSAKGLEFPNVFVVGLEENLFPSP--------------------- 593

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                        +        EE  RL YV +TRA +   +    +     K       
Sbjct: 594 -------------LSSACYRALEEERRLFYVAVTRAEEHCYLSYAKSRFKYGKMEFCNPS 640

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             + D      +V + +L  +  +++   +             RE             + 
Sbjct: 641 RFLKDIDVRYLQVPQEELMGTRIEEKASRFRKEASRASYEREPRETGPSMFDGGPMPEEP 700

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                   +      +PS           S
Sbjct: 701 HRFVPPRTLRRIPDASPSAAPAGPSAGGLS 730


>gi|114561615|ref|YP_749128.1| ATP-dependent DNA helicase Rep [Shewanella frigidimarina NCIMB 400]
 gi|114332908|gb|ABI70290.1| ATP-dependent DNA helicase Rep [Shewanella frigidimarina NCIMB 400]
          Length = 670

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 108/650 (16%), Positives = 221/650 (34%), Gaps = 136/650 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+        ++ F+LL    LT+        + + +     + K  L   Q      +D
Sbjct: 101 LKAGFSLFDDQDTFALLKE--LTEDELDDDKDLIKSLASAISNWKGGLVIPQQAKSMAKD 158

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
             +             L   L A Y +  K    LDF+DLI+    LL+  +    +R +
Sbjct: 159 EQS------------QLFAMLYARYAQHMKSYNALDFDDLILIPTLLLRMNEE---VRTR 203

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
              +I ++L+DE QDT+  Q+E+++ L  +                VGD+ QSIYS+ GA
Sbjct: 204 WQTKIQYLLVDEYQDTNTSQYELVKLLVGE----------RARFTVVGDDDQSIYSWRGA 253

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +P+ ++       +          +I+L  ++RS+  IL   + + +   +    +  S 
Sbjct: 254 KPQNLVLLGTDFPR--------LKLIKLEQNYRSSQRILRAANILIANNPHVYDKALFSE 305

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G+   V +                             ++    A R+   
Sbjct: 306 -------LAYGEPLRVLI----------------------------AANEEQEAERVVAE 330

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I           +      +  D  +L R    + L+           +I    +     
Sbjct: 331 IIR---------HKFVGRTKFGDYAILYRGNHQSRLLERSL----MTNRIPYKLSGGTSF 377

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY-- 469
                IKD+M   R +++ +DD +F+ ++  P        + ++      +  +++E   
Sbjct: 378 FSRAEIKDIMGYLRLVVNPDDDNAFLRVVNLPKRGIGPASLERLGNFANQKHISLFEAIF 437

Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SR 520
                   A   ++      K+I +   +A    P +    ++               ++
Sbjct: 438 DVELNHHLAPAAVNSLYQFGKFIVDTGEVASRGEPVEAIKQLIRKINYEDYLYETSTSAK 497

Query: 521 FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                +  + E   +        E +   +L E+++ L       + +     ++V++MT
Sbjct: 498 AAEMRMKNISELYRWVTEMLEGDELDEPMTLPEVVTRLTLRDMMERNSEDEGGDQVQLMT 557

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE P VF+V    ++  H+                                   
Sbjct: 558 LHASKGLEYPFVFMVGVEERILPHQSSID------------------------------- 586

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQL--IICKHSNTSNEKKSNQRTWYDM 684
               +   +E  RL YVG+TRA  +L  +IC+      E    + + + +
Sbjct: 587 ----EDNVDEERRLAYVGITRAQRELWFVICRERRQFGETMRCEPSRFLL 632


>gi|152978361|ref|YP_001343990.1| ATP-dependent DNA helicase Rep [Actinobacillus succinogenes 130Z]
 gi|150840084|gb|ABR74055.1| ATP-dependent DNA helicase Rep [Actinobacillus succinogenes 130Z]
          Length = 675

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 112/645 (17%), Positives = 210/645 (32%), Gaps = 124/645 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +    + +    L+E + +  +    +          K       +      
Sbjct: 112 DQMALLKELTADYLQEDKDLLRELVMRISNWKNDLILPEQALASAKDQKQ--QVFARCYV 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y         LDF+DLI+    LLK+ +    +R K   +I ++LIDE QDT+  Q+E+
Sbjct: 170 RYANQMHAYNALDFDDLIMLPTLLLKQNED---LRSKWQTKIKYLLIDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I+ L            +      VGD+ QSIYS+ GA P+ ++R +    +         
Sbjct: 227 IKLLVG----------TRARFTVVGDDDQSIYSWRGARPQNMVRLRDDFPQ--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST  IL   + +     +       S                        
Sbjct: 269 KVIKLEQNYRSTQRILHCANILIDNNAHVFEKKLFSNL---------------------- 306

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    + E          +  +  ++A  IA+                    + KD
Sbjct: 307 --------GEGEPLQVIEAKNEEHEAERVVAELIAHR--------------FSHKTKYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             VL R    + L+  +        +I    +        + IKD+MA  R +++Q+DD 
Sbjct: 345 YAVLYRGNHQSRLLEKIL----MQNRIPYKISGGTSFFSRMEIKDMMAYLRVLVNQDDDA 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           + + ++ +P        + K+      +  +++E I  F           +  QH  +++
Sbjct: 401 ALLRIINTPKREIGAVTLEKLGMLAHEKHISLFEAIFDFDLIHRVTPKAYNALQHFARWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFT----LRN 539
            EL        P      +L      +                  +     +       +
Sbjct: 461 VELNDELLRSEPERAVKRMLAQIHYEEYLYENAVSPKAAEMQSKNVATLFEWVGGMLQGD 520

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++ L       +       ++V++MT+H +KGLE P VFLV     +  
Sbjct: 521 EYSEPMTLDQVVTRLTLRDMQERGEDDDESDQVQLMTLHASKGLEFPHVFLVGMEEGLLP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 581 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 605

Query: 660 DQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             L   +CK      E    + + + +            K  +T 
Sbjct: 606 RTLRFTLCKERRQYGELIKPEASRFLLELPQDDVQWERDKPPMTE 650


>gi|326804259|ref|YP_004322077.1| ATP-dependent DNA helicase PcrA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650562|gb|AEA00745.1| ATP-dependent DNA helicase PcrA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 818

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 111/720 (15%), Positives = 226/720 (31%), Gaps = 129/720 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    V   N             + ++ + L   +        
Sbjct: 31  GAGSGKTRVLTHRMAYLLEEKAVRPWNILAITFTNKAANEMKERVKNLVGEAADTMWVST 90

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  +    L ++       ++    +  ++   +K  +K    +  + + +    K+  +
Sbjct: 91  FHSMCVRILRREAEAIGLSRSFTIADPAEQQSLIKRIMKDHNLDTTQFKPKMILGKISDA 150

Query: 123 TLASLT--------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L               +   L   Y+   +    LDF+DLI+ T  L K++     
Sbjct: 151 KNNLLGPKEYRQEYTGFIENIVADLYEDYQAGLQAAQSLDFDDLIMLTVRLFKEQPE--- 207

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           I     Q+ ++I +DE QDT+  Q+ +++ L + F          + +  VGD  QSIY 
Sbjct: 208 ILSYYQQKFHYIHVDEYQDTNEAQYRLVKLLADYF----------KNICVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + +L  ++   +          +I L  ++RST  IL   ++V     + Q   
Sbjct: 258 WRGANMENILNFEKDYPQ--------AKVILLEQNYRSTKTILKAANEVIQNNIHRQAKK 309

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              + ++    +   +          
Sbjct: 310 ---------------------LW-------TDNQTGGKINYYRAQNEQDESH-------Y 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I               +  Q KDI +L R    +  +            I      
Sbjct: 335 VLDKIRQ---------ATTDKNYQYKDIAILYRTNAQSRTMEEAL----VKANIPYRIVG 381

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   IKD++A  R + + +D+LSF  ++  P        + K+         T+ 
Sbjct: 382 GLKFYDRKEIKDILAYLRLLTNPQDNLSFTRIINVPKRGVGPGTLDKLRQFASEHGLTLL 441

Query: 468 EYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
           +  QK              +     +  L    +F +  D    +L          ++  
Sbjct: 442 QAAQKVDYAPISGKGAKSLKRFADMMTNLQKQREFLTITDLTEEVLDKSGYLADLKAQKT 501

Query: 523 NE---VIDVLDEFLNFTLRN------EQNSYSSLQELISE------LEQYPPTIKRAHSA 567
            E    I+ ++EFL+ T         E +   +L E+         +E          S 
Sbjct: 502 LEATARIENIEEFLSVTRAFDERWEKEADQRQALAEIPQTDQAGNPVEAVDLMADPNQSD 561

Query: 568 NHNEVRIMTVHT--AKGLESPVV---------------FLVDTG-----SQVFSHKHIKK 605
              E+ +++     A   ++ +V               F+ D        +  +++   +
Sbjct: 562 QGEEISLLSPEELDAGLGQAALVSLEAGTDASEDALLAFITDLSLVSDLDESETNEEEGQ 621

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           +++M            +        I             EE  RL YVG+TRA ++L + 
Sbjct: 622 VNLMTLHAAKGLEFPIVFIIGMEEGIFPLSRASEDDEELEEERRLAYVGITRAEEELYLT 681


>gi|300714804|ref|YP_003739607.1| DNA helicase II [Erwinia billingiae Eb661]
 gi|299060640|emb|CAX57747.1| DNA helicase II [Erwinia billingiae Eb661]
          Length = 720

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 105/672 (15%), Positives = 209/672 (31%), Gaps = 98/672 (14%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +     S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLMAVENCSPYSIMAVTFTNKAAAEMRHRIEQLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLT------------QKFTPQKNIITQEINKKSPDLKEKLKKSQDEF----IK 109
           F  L+   L             Q    +  +   +   K+ +L +K   ++        K
Sbjct: 90  FHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKAMNLDDKQWPARQAMWYINGK 149

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +      +             +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 150 KDEGLRPKHIESYGNPVEQTWLRIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---I 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   ++L+DE QDT+ IQ+  IR L  D             +  VGD+ QSIY +
Sbjct: 207 LNHYRERFTNVLVDEFQDTNNIQYAWIRMLAGD----------TGKVIIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R             +    + L  ++RST +IL   + + +      G   
Sbjct: 257 RGAQVENIQRFLTDF--------KGAETVRLEQNYRSTNNILKAANTLIANNNGRLGK-- 306

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW           + +  S    F+ L +       AR +
Sbjct: 307 -------------------ELW-------TDGKDGEPISIYCAFNELDE-------ARFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I   +                KD  +L R    + ++            +       
Sbjct: 334 VNRIKVWMENGGAL----------KDCAILYRSNAQSRVLEEAL----LQTSMPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD +A  R I ++ DD +F  ++ +P     +  +  +    R    T+++
Sbjct: 380 QRFFERQEIKDALAYLRMISNRNDDAAFERVVNTPTRGIGDRTLDVVRQTARERQLTLWQ 439

Query: 469 YIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF---IS 519
             +             S  Q   + +  L         H     ++        +     
Sbjct: 440 STRALLQEKALAGRAASALQRFTELVDSLAQETSEMPLHVQTDRVIKDSGLWLMYDQEKG 499

Query: 520 RFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
             G   I+ L+E +N T +   Q+    L  L + L        +       + V++MT+
Sbjct: 500 EKGQARIENLEELVNATRQYSYQDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTM 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE   VF+V     +F  +   +                    +      ++  +
Sbjct: 560 HAAKGLEFIQVFIVGMEEGMFPSQMSLEEGGRLEEERRLAYVGVTRAMQKLTLTYAETRR 619

Query: 638 HLKKSTQEEYNR 649
              K      +R
Sbjct: 620 LYGKEVNHRPSR 631


>gi|116074476|ref|ZP_01471738.1| UvrD/REP helicase [Synechococcus sp. RS9916]
 gi|116069781|gb|EAU75533.1| UvrD/REP helicase [Synechococcus sp. RS9916]
          Length = 795

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 103/625 (16%), Positives = 199/625 (31%), Gaps = 99/625 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y +A   N      D        ++    +  +R    +   H+L+DE QD
Sbjct: 202 KLMADVYRRYRKALAANNA---LDFDDLLLLPVQLLQQNEQVRGYWHRRFAHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGK-NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  D    +   + + R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYELIKLLVTDGKEPQVYDNWTGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +A +   + ++++L  ++RSTA IL   + + +            T              
Sbjct: 319 KAPDDATR-TMVKLEENYRSTATILEAANALIANNSERIDKVLRPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  + T   D + +       A  + + +  M          
Sbjct: 365 ---------------GEGELITLTRCDDEIAE-------AEAVVHRLRMM--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ VL R    +  I          ++I  V        D   IKD++   R
Sbjct: 395 ANPELSWGDMAVLYRTNAQSRAIEESL----VRWRIPYVVVGGLRFYDRREIKDVLGYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  I +     ++    ++      E  +        
Sbjct: 451 LLINPADTVSLLRVINVPKRGIGKTTIQRCTDAANQLGIPLWDVVSDPEAARSLGGRSAR 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + I++L        P +    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCELINDLKQRIHDTPPSELIQQVMEKSGYVSELIAEGTDEAEERRRNLQELVNAG 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N    L+  ++          +   A  + V +MT+H++KGLE PVV LV    
Sbjct: 571 LQYQEENDEGDLEGFLASAALASDADSKDTEA--DRVTLMTLHSSKGLEFPVVCLVGLEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +             I  +           +  
Sbjct: 655 TRAKERLFLSHASERRLWGGMREPAVPSVFLSELPEALVQGDIPRSGGAAIRREQRLDRL 714

Query: 716 THHPENTPLEREETIKQLMDEQKIP 740
           T      P        +       P
Sbjct: 715 TRVDRAKPTSAPANAVRRRQAGPAP 739


>gi|15602924|ref|NP_245996.1| hypothetical protein PM1059 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721395|gb|AAK03143.1| Rep [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 671

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 111/642 (17%), Positives = 218/642 (33%), Gaps = 121/642 (18%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             +T ++  +  DL  +L      +          K          +       Y +  +
Sbjct: 118 KELTADLLCEDKDLLRELISVISRWKNDLVLPPQAKQLAR-DHKQQMFAECYDRYNQQIR 176

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF+DLI+    LL++ D    +R K  Q+I ++L+DE QDT+  Q+E+I+ L  +
Sbjct: 177 AYNALDFDDLIMLPTLLLQQNDA---VRTKWQQKIRYLLVDEYQDTNTSQYELIKLLVGE 233

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                           VGD+ QSIYS+ GA+P+ ++R K              ++++L  
Sbjct: 234 ----------RACFTVVGDDDQSIYSWRGAQPQNMMRLKTDFPH--------LNVVKLEQ 275

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RST  IL   + +    ++       ST                              
Sbjct: 276 NYRSTQRILHCANILIDNNDHVFAKKLFSTL----------------------------- 306

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             Q E          +E +  ++   IA+                 R  + KD  +L R 
Sbjct: 307 -DQGEKLQVIEAKNEEEEAERVVGELIAHR--------------FMRKTKYKDYAILYRG 351

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++ 
Sbjct: 352 NHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIVN 407

Query: 443 SPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHIA 495
           +P        + K+      +  +++E       IQ+      +  QH  ++I +L    
Sbjct: 408 TPKREIGTVTLQKLGELAHEKHCSLFEAIFDFELIQRITPKAYNALQHFGQWIVQLSDEV 467

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYSS 546
               P      +L      +       +          +    ++        + +   +
Sbjct: 468 IRSEPERAIRSMLAQLHYEEYLYEYATSPKAAEMQSKNVATLFDWVAEMLKGNDMDEPIT 527

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++ L       +       ++V++MT+H +KGLE P VFL+     +  H+     
Sbjct: 528 LNQVVTRLTLRDMLERGEEDDESDQVQLMTLHASKGLEFPHVFLIGMEEGILPHQTSID- 586

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   EE  RL YVG+TRA   L    
Sbjct: 587 ----------------------------------EDNVEEERRLAYVGITRAQQTLTFSL 612

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
                   +  +      + +   +D + ++ K   +  +  
Sbjct: 613 CKERRQFGELLKPEPSRFLAELPTDDVQWERDKPPLTQEQVR 654


>gi|85710882|ref|ZP_01041943.1| Rep helicase, a single-stranded DNA dependent ATPase [Idiomarina
           baltica OS145]
 gi|85695286|gb|EAQ33223.1| Rep helicase, a single-stranded DNA dependent ATPase [Idiomarina
           baltica OS145]
          Length = 672

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 102/684 (14%), Positives = 205/684 (29%), Gaps = 129/684 (18%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           L   +    A   +     F    ++ L    T       + + +K      + K +   
Sbjct: 88  LNIIRRELSALGLKPGFSLFDDQDTYALLNGLTEDAWEGDKAVIQKCQHRIGQWKNAMIS 147

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             +     +T    +           + A YE+       +DF+DLI   + LL++ +  
Sbjct: 148 PEQALQEASTEDDRQF--------ATVFAQYEKHLLACNAVDFDDLIRLPSQLLQRNEH- 198

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R +  ++  ++L+DE QDT+  Q+ +++ L  +                VGD+ QSI
Sbjct: 199 --VRARWQKKFRYLLVDEYQDTNTSQYLLVKLLVGE----------RARFTVVGDDDQSI 246

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YS+ GA+P+ +   ++              +++L  ++RS   IL   + +     +   
Sbjct: 247 YSWRGAQPQNLALLQQDFPT--------LKVVKLEQNYRSHGRILKAANILIENNPHVFE 298

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               S                                            +    +    A
Sbjct: 299 KKLFSDKE-----------------------------------YGESLRVIFGRNEEHEA 323

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            R+   I                        +L R    + L          + +I    
Sbjct: 324 ERVVAEIVK---------QRFLSKTPYHHFAILYRGNHQSRLFEKAL----MNNRIPYKI 370

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465
                      +KD+MA  R +++  DD +F+ ++  P        + +I    +    +
Sbjct: 371 TGGQSFFARAEVKDIMAYLRLLVNPADDTAFLRIINVPRRGIGPQTVQRIGELSKQLGCS 430

Query: 466 VYEYIQKFA------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           + E                +      + I      A           IL A+ G   ++ 
Sbjct: 431 LLEACDSIHLKTLLNTQTFNAVDTFAQMIKNAAREADHNESAAVAVRILLAEIGYDDWLF 490

Query: 520 RFGNEVID------VLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANH 569
                          + E   +        ++    SL++ +++L       +       
Sbjct: 491 ETSPSAKAAEMRVKNVYELHKWVSDMLAGNDEYEPISLEQAVAKLCLRDMMSRNEDDEQF 550

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V++MT+H +KGLE P VFLV     +  H+                            
Sbjct: 551 DQVQLMTLHASKGLEFPFVFLVGMEEGLLPHQSS-------------------------- 584

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                    ++    EE  RL YVG+TRA  +L+           +  Q      + +  
Sbjct: 585 ---------IEGDDIEEERRLAYVGITRAQHRLVFTLAKERRQFGEVFQPQPSRFLLELP 635

Query: 690 HNDERVKKIKLTNSINKDEWIAYE 713
            +D   +  K   S  + E     
Sbjct: 636 QDDISWEHDKHKPSEEERETTRQR 659


>gi|305665916|ref|YP_003862203.1| ATP-dependent helicase [Maribacter sp. HTCC2170]
 gi|88710691|gb|EAR02923.1| ATP-dependent helicase [Maribacter sp. HTCC2170]
          Length = 1037

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 126/835 (15%), Positives = 269/835 (32%), Gaps = 119/835 (14%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            +I     +L  +     +    I  +    +     L  LT+   +    +  +++  +L
Sbjct: 293  DIKTILDNLHPQFISIFNRIKDIFHQTLFLQNIYKNLLPLTVLNAIQKEVKNIQEERRLL 352

Query: 148  D---FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F  +I N          + +I  ++ ++  H  IDE QDTS +QW  +  L  +  
Sbjct: 353  SISEFNTIISNEIK----NQPAPFIYERLGEKYRHYFIDEFQDTSELQWNNLVPLISNAL 408

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
             G++T  +  +LF VGD KQ+IY + G   +   +   +  +       +    +LP ++
Sbjct: 409  EGEDTQGNSGSLFLVGDAKQAIYRWRGGRAE---QFLSLVNEHTNPFVVEPKTYDLPSNY 465

Query: 265  RSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            RS  +++   +  F+        GL +D       + S   + G VQ             
Sbjct: 466  RSHENVIKFNNDFFNRTSPFLNNGLYQDLFEKGNQQESNNKKGGLVQ------------- 512

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                    ++ +   +++   +    +  TI +++           +     +I +LVR 
Sbjct: 513  -------MTFLEEDQEQNLDELYCEEVFSTIQSILQ----------KSYALNEIAILVRD 555

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
             K       L         I +V  D  +++++  ++ L+ L  +   ++D  +   +L 
Sbjct: 556  NKHGI----LLAEFLTKKGIPIVSPDSLLISNNNKVQFLINLLHYTGHKDDLNACYNILY 611

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                              +  + + E                       +   +  S +D
Sbjct: 612  FLAGGKENKHAIISAHLHNLDDFLKETYNFE------------------LSNLKKMSVYD 653

Query: 503  FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               L +               +    +   L+  L  EQ   + L   +   E+      
Sbjct: 654  GLELAIK--------CFDLIPDSDASVTFLLDIALEVEQKEGAGLNTFLVNWEKKKDKYS 705

Query: 563  RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
             A   N N ++IM++H +KGLE P+V      S ++     K    +     +    + I
Sbjct: 706  IAAPNNLNAIKIMSIHKSKGLEFPIVIFPFANSNIYKEIDPKLWLSVDQSKFNGFNEVLI 765

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYN---RLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
             + K      S+ +K  ++           +LYV MTRA   + I    + ++ K + + 
Sbjct: 766  SKKKEVLEYGSNALKVFEEEQHRLELDAFNILYVAMTRAEKAMFIITIKDEASIKSNRKT 825

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
             + D+               L  +    +                        + ++  +
Sbjct: 826  HYSDVFIHYLKTKNLWNSTDLIYTFGSLKIN--------------------PNIQEDLSL 865

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
             K       N  N              K  L       +   RG +IH ++     +   
Sbjct: 866  EKSFPFEYSNKDNP-------NFSIMTKAGLLWDTKQEKALLRGNLIHYIM---GLIETS 915

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
               + +     +   +   +    L   +  ++ +  +    S      V    +I    
Sbjct: 916  VDIDLVFKDLEQKGAINDEETAP-LREKVLNVVNHVNLKKYYSKGVV--VKNEKEIITKN 972

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
             +I+   R D++ I++    I +YKT              +  QL+ Y   L+D 
Sbjct: 973  GEIL---RPDRVIINEGKATIIDYKTGKENAS--------YSRQLNSYATALEDM 1016


>gi|167767205|ref|ZP_02439258.1| hypothetical protein CLOSS21_01724 [Clostridium sp. SS2/1]
 gi|167711180|gb|EDS21759.1| hypothetical protein CLOSS21_01724 [Clostridium sp. SS2/1]
          Length = 745

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 105/542 (19%), Positives = 185/542 (34%), Gaps = 111/542 (20%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LD+ DL+  +  + +K      IR K  + + +I+IDE QD   IQ+++++ L       
Sbjct: 222 LDYNDLLKFSLYIFEKN---KEIRLKWQKRLEYIMIDEFQDIDKIQYQLMKVLCGY---- 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                  + LF VGD  Q+IYS+ GA+   +L   +               I +  ++RS
Sbjct: 275 ------HKNLFIVGDPDQTIYSWRGADINYLLNFDKAFP--------DVKTIMMNENYRS 320

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  IL+V + +    +N                          L     S++        
Sbjct: 321 TPQILSVCNSLIDKNKNRMKK---------------------DLLPMCHSKNS------- 352

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                + D+  +ES        IA  I  +            + I  KDI +L R    T
Sbjct: 353 -VLYYHGDTSEEES------DWIADQIIKLHK----------KDISYKDITILYRAHYVT 395

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +           KI           + + +KD ++  R I   +DDLSF+ ++  P  
Sbjct: 396 RTLEETL----LKKKIPYSIYSGIQFFERMEVKDALSYLRMIT-YKDDLSFLRIVNVPKR 450

Query: 447 NFSEDDIFKICTQ-RHETETVYEYIQKFANCGISK---FQHVIKYIHELIHIAQFCSPHD 502
           N  +  +  +         + YE +++     I K    +  I  I       +  +  +
Sbjct: 451 NIGKKRMEFLQAYVNAHHCSFYEALKECVEDPIFKGTDAKDFISLIDAFSVTYEQRTISE 510

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
             + IL      +   +    E +D L E        E +       L   L+       
Sbjct: 511 VLSDILDRSGYEEMLRTTGNQERLDNLAELKQAVYDYEISCGEE-ALLPDYLDHIALFTN 569

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
              + + ++V++MTVH AKGLE P VFL      +F  K    +                
Sbjct: 570 SDVTDDSDKVKLMTVHAAKGLEFPHVFLCALNEGIFPSKKTSTI---------------- 613

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                 EE  RL +V M+RA   L + +    + +  +   + +
Sbjct: 614 -------------------EGMEEERRLAFVAMSRAMKSLFLSESHGKNFDGSTRYPSRF 654

Query: 683 DM 684
            +
Sbjct: 655 IL 656


>gi|262369123|ref|ZP_06062452.1| ATP-dependent DNA helicase [Acinetobacter johnsonii SH046]
 gi|262316801|gb|EEY97839.1| ATP-dependent DNA helicase [Acinetobacter johnsonii SH046]
          Length = 679

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 102/632 (16%), Positives = 207/632 (32%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      + +   +++ I       T +  +          +L   YE  
Sbjct: 127 RDNLSGAESKELIAKAMKMISDWKNDLIPPEQAHTTCETAEDVQ-----FAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R +    I ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQEN---AEVRERWQNRIRYLLVDEYQDTNTAQYILVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +                   +I+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLNEDFHN--------LKVIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  ++   +  ++D 
Sbjct: 281 EQNYRSTSRILKAANTVIGNNPHIFDKKLWSDK------------GHGEVIRVITCRNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
             +                             + ++I    +           KD  +L 
Sbjct: 329 DESE--------------------------RVVKDLITHKLMNGK------NWKDYAILY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R       +    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARALETQLRQMQ----IPYKLSGGQSFFGRAEIKDVMSYLRVIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFK--ICTQRHETETVYEYIQKFANCGISK-----FQHVIKYIHEL-I 492
           + +P        + K  +  Q +    +     +     I K           +I     
Sbjct: 413 INTPKRAIGPVTLEKLGLFAQENHLSLLSAAGDQRLTMVIPKKATTQLAEFADFITTFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNFTL----RNEQNS 543
            + +   P      ++                       D ++   +       R E   
Sbjct: 473 ELLEDDEPVPIIRKMMVEAGYIDYVKESAATPAQEKTKLDNIEVLYSSIQSLINRAEDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I ++       ++    + ++V ++T+H +KGLE P V+L+    ++  HK+ 
Sbjct: 533 EKNIESVIRKMVLLDMLEQQQEEEDTDKVNLLTLHASKGLEFPYVYLIGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IAADTVEEERRLMYVGITRARQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           I          +  Q T    + +   ++   
Sbjct: 618 ITLAEQRKAGGQMKQMTPSRFLDELPQDELEW 649


>gi|254506751|ref|ZP_05118891.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16]
 gi|219550332|gb|EED27317.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16]
          Length = 1194

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 136/888 (15%), Positives = 264/888 (29%), Gaps = 137/888 (15%)

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
              D F    +           ++       AK++   L F+DL+          D    +
Sbjct: 301  AIDDFLANPISLKAPILAHAIEHCREMLASAKQQKQWLSFDDLLTQ-LSASIDGDEMGLL 359

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              +I       +IDE QDT  +Q+ +   +  D+            LF +GD KQ+IY F
Sbjct: 360  AERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLDY--------PQFGLFMIGDPKQAIYGF 411

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA+    ++ +       T          L  ++RS+AD++  V+++FS+P +     +
Sbjct: 412  RGADIFTYIKARNQVSSHFT----------LGTNWRSSADMVAAVNQIFSLPTSPFIYDQ 461

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS--LPQESSASILAR 347
            D    I             ++W         Q  P    W    D   LP+    S +A+
Sbjct: 462  D----IPFLPVNHSPNAEKRVWTMA-----GQKQPALTYWLQDADEKPLPKGEYLSAMAK 512

Query: 348  RIAYTISNM-----IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  I  +     IG            +QA DI VLVR   +  ++      L      
Sbjct: 513  ATADQIQTILSAAQIGEAHFEDGKGAHAVQAGDIAVLVRTGSEGRMVKE---ALAKQGIA 569

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            SV  ++R  +   +   DL  + + +L+ E+D +    L S LF      + K+    +E
Sbjct: 570  SVYLSNRDSVFTSVVAADLQRMLQAVLTPENDRALRASLASELFALDAGTLDKLNNDENE 629

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             E+     +++    +   + V+  +  ++              +L    G +       
Sbjct: 630  WESAINEFKEYRKLWVQ--RGVLPMLRSVMSKRH------IAERLLEEDNGERNLTDLM- 680

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMT 576
                  + E L        + +  L+ L   +              +   +  N V+I+T
Sbjct: 681  -----HIGELLQQASTELDSDHGLLRWLAQAISDAQNGLGGSEDQIQRLESERNLVQIVT 735

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE  +VFL                      ++         ++          +
Sbjct: 736  IHKSKGLEYDLVFLPFV-------------LSYREASEAKYYDATQDRTILDITKHEASL 782

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            K   K    E  RL+YV +TRA     I      +          +         D +  
Sbjct: 783  KQADKERLAEDLRLIYVALTRAVYGCFIGAAPLRNGRSTKEPTGVHHSAMGYLLQDGQEG 842

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS----------- 745
             I       + +  A E           E    +     E    + L             
Sbjct: 843  GINDLAQAIQAQVEALEPVVCTGLPDEHEAPLHVVATETETLHARTLAQSIDRNWRITSY 902

Query: 746  --------------PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
                           + + +      +    + +     +++ +  +    G  +H L +
Sbjct: 903  SGLVKQGHSHHGDDALSDLMRLDVDSSGEQDEDELLEPEQTIFTFPRGARPGTFLHSLFE 962

Query: 792  VIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCD 844
             I        +    +  T   ++         L   I  +L  P+      +       
Sbjct: 963  EIEFTQPASSEENQQAIITLMESEQLDPSWLPILQSLIDTVLATPLDGKSIILNQKKPSQ 1022

Query: 845  SYSEVSVSGKINCPKKDII-------------------------ISGRIDQISISQQNIF 879
               E+     I       +                         + G ID +   +   +
Sbjct: 1023 RLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQNVQGMLKGFIDLVFEDKGKYY 1082

Query: 880  IFEYKTHHHVPQ----EIEHIPY-----THIAQLSIYEKILKDSYPNK 918
            + ++K++H          E +        +  Q  IY   L     ++
Sbjct: 1083 VLDWKSNHLGDDVSYYHGEALKAAMADHRYDLQYQIYALALHRFLRSR 1130


>gi|292486654|ref|YP_003529524.1| ATP-dependent DNA helicase RepA [Erwinia amylovora CFBP1430]
 gi|292897891|ref|YP_003537260.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291197739|emb|CBJ44834.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
 gi|291552071|emb|CBA19108.1| ATP-dependent DNA helicase RepA [Erwinia amylovora CFBP1430]
 gi|312170720|emb|CBX78982.1| ATP-dependent DNA helicase RepA [Erwinia amylovora ATCC BAA-2158]
          Length = 672

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 107/667 (16%), Positives = 216/667 (32%), Gaps = 121/667 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K++  Q +      L++ +    +    + D         S      L  +  A
Sbjct: 112 DQLALLKDLTEQWLENDKNLLQQLVSTISNWKNDLMDPSRAAAGALSERD--RLFAHCYA 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K   VLDF+DLI+    L ++      +R +  Q I ++L+DE QDT+  Q+E+
Sbjct: 170 LYDKHLKSCNVLDFDDLILLPTLLFQRN---QEVRERWQQRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++  ++             
Sbjct: 227 VKLLVG----------TRARFTVVGDDDQSIYSWRGARPQNLVLLQQDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S                        
Sbjct: 269 QVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS------------------------ 304

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                      E        +   +     A R+   I  +I    I         Q KD
Sbjct: 305 -----------ELGYGAELKVVTANHEDHEAERV---IGELIAHHFI------NKTQYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + +       L    +I    +          IKDL+A  R + + +DD 
Sbjct: 345 YAILYRGNHQSRVFEK----LLMQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNADDDS 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++               G+   Q    ++
Sbjct: 401 AFMRIVNTPRREIGSATLQKLGEWAMQRNKSLFTASFDVGLGQTLTGRGLESLQRFTHWL 460

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQ--- 541
            ++  +A+        D    I       +   S    E  +  ++    +     +   
Sbjct: 461 QDIARLAEREPVAAVRDLIRGIDYESWLFETSASPKAAEMRMKNVNTLFQWMTEMLEGSD 520

Query: 542 -NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 521 IDEPMTLTQVVTRFTLRDMMERGESDEESDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       ++  EE  RL YVG+TRA  
Sbjct: 581 QSSID-----------------------------------ENNVEEERRLAYVGITRAQK 605

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L            +  +      + +   +D + +  +   S  +              
Sbjct: 606 ELTFTLCRERRQYGELVRPEPSRFLLELPQDDLQWESERKVVSAEERMQTGQSRVAGLRA 665

Query: 721 NTPLERE 727
                R+
Sbjct: 666 MLDKARK 672


>gi|52842039|ref|YP_095838.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148359358|ref|YP_001250565.1| ATP-dependent DNA helicase [Legionella pneumophila str. Corby]
 gi|296107405|ref|YP_003619105.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            pneumophila 2300/99 Alcoy]
 gi|52629150|gb|AAU27891.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|148281131|gb|ABQ55219.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            pneumophila str. Corby]
 gi|295649306|gb|ADG25153.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella
            pneumophila 2300/99 Alcoy]
 gi|307610513|emb|CBX00098.1| hypothetical protein LPW_18431 [Legionella pneumophila 130b]
          Length = 1076

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 164/912 (17%), Positives = 310/912 (33%), Gaps = 138/912 (15%)

Query: 46   ILKKAQTLQQASQTQC--IEERFSLLSSFF--------LTQKFTPQKNIITQEINKKSPD 95
              + A  L +   T    + + F                T+  T   ++  +   +  PD
Sbjct: 271  DQQIAGALSKLLLTSDNQLRKSFDHHVGLVKKNCAPNEFTRIKTASSDLFAK--LQDCPD 328

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
              + L K         D+     +    L    L  +L   +     ++  +DF  +   
Sbjct: 329  FLDALLKVNQLPTPEYDKEQWDVLQALFLLLPLLVGHLQVSF----GEHNEVDFTAISQQ 384

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
                L   D    +   +D  I+H+LIDE QDTS+ Q+E++  L + +  G+      +T
Sbjct: 385  ALAALGDLDNPTDLALYLDHSIHHLLIDEFQDTSITQFELLTKLVQGWLPGEG-----KT 439

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            LF VGD  QSIY F  AE     + K            +   +EL  +FRST  I+  V+
Sbjct: 440  LFLVGDPMQSIYRFRQAEVGLFFQAKEH-----GIGPVRLKSLELRCNFRSTETIVNWVN 494

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
              FS   + Q                  + G V     V     ++ +  Q         
Sbjct: 495  DHFSKIFSQQVDI---------------ESGAVSFHPSVHVIEKNESSTIQAV------- 532

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              Q  +    AR +   I++ +  +             + I VLVR R   P I  L R 
Sbjct: 533  --QFKNREQEARHLIEIINSELNRNPE-----------QTIAVLVRTRTQLPEIISLLR- 578

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  I   G D  +L + + ++D+ +L   +L   + LS++ +L SP       DI  
Sbjct: 579  ---QNNIPYQGTDIDLLANLVHLRDVWSLAHALLFPGNRLSWLSILHSPYVGLGLSDIHC 635

Query: 456  ICTQRHETETVY-----EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            I          +     + IQ  +  G  +    I+ +++ +         D+    L  
Sbjct: 636  IAQYNSRKSIYHNLLHLDKIQDISEEGRIRANFFIQIMNQALLCRSHSRLSDWIADTLKN 695

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                ++ + +     ++ L   L+     E+     + ++   L ++      A     +
Sbjct: 696  L-HVEKILDKAQLNDLEQLWMLLDQ---YEKEGR--IPDMNEFLNEFN--KLYAQQTTPS 747

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS---KS 627
             ++IMT+H +KGLE   V L   GSQ    +      +     D   + +  P     + 
Sbjct: 748  RLQIMTIHKSKGLEFDTVILPGLGSQANRGESPMLRWLKLPTQDHGNLLLVSPIKSANQD 807

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
               +   L +  ++ +  E  RLLYV +TRA  +L +       +  KS + ++ +++  
Sbjct: 808  NCPLYDYLDQLDEEKSAYEAQRLLYVAVTRAKSRLYL-----LDHSAKSYKSSFRNLLKY 862

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                                                +   +  +    E  +PK +  PI
Sbjct: 863  ---------------------------------QEFIADPDEAQHEEQEFPLPKLVKLPI 889

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
            +    +   L  S    +        +S       G++ H+LLQ I         +   +
Sbjct: 890  EYYQKQIPSLVQSQ---ESSCP---EISSGIPRLIGIVSHQLLQWICDNHPQTINHVPWN 943

Query: 808  YCTKNAKLWPAKEYKNLLL------SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
                  K     +             I+++ EN +    +S    +E     ++    ++
Sbjct: 944  LVHNELKALGLNQEAQQTALSMIKIQISQMYENKIGLWILSRHE-NEQ-NEYELLVEYEN 1001

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
             +++  ID+        +I ++KT       +      H  QL+ Y + L D      + 
Sbjct: 1002 KLVTRIIDRTFTENGTQWIIDFKTGKEDINTL----QKHRQQLNEYGRYLSD-CTKFPIR 1056

Query: 922  CLLIYVSEPKVF 933
            C L Y++     
Sbjct: 1057 CGLYYLANGHWI 1068


>gi|52424468|ref|YP_087605.1| UvrD protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306520|gb|AAU37020.1| UvrD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 671

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 112/654 (17%), Positives = 217/654 (33%), Gaps = 124/654 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +    + +    L+E +    +    +       K+ +              
Sbjct: 112 DQMALLKELTEDYLQQDKDLLRELISVISNWKNDLIMPAQAAKIARDEKQ--QTFAKCYE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y    +    LDF+DLI+    L K  +    +R K  ++I ++L+DE QDT+  Q+E+
Sbjct: 170 RYANQIRAYNALDFDDLIMLPTLLFKTNE---QVRSKWQEKIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I+ L            S      VGD+ QSIYS+ GA P+ ++R +              
Sbjct: 227 IKLLVG----------SRAKFTVVGDDDQSIYSWRGARPQNMVRLRDDFPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST  IL   + +    ++       ST     +                 
Sbjct: 269 QVIKLEQNYRSTQRILHCANILIDNNQHVFDKKLFSTIGEGEKL---------------- 312

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                               + +  +    A R+            +  +      + KD
Sbjct: 313 -------------------QIIEAKNEEHEAERVV---------GELIGHRFTNKTKYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L+  +        +I    +        L IKD+MA  R +++Q+DD 
Sbjct: 345 YAILYRGNHQSRLLEKVL----MQNRIPYKISGGTSFFSRLEIKDMMAYLRLLVNQDDDA 400

Query: 436 SFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYI 488
           +F+ ++ +P        + K+ +    +  +++E I  F           +  Q   ++I
Sbjct: 401 AFLRIVNTPKREIGAVTLEKLGSLANEKHISLFEAIFDFELIQRVTPKAYNALQTFGRWI 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRN---- 539
            EL        P      +L      +    +             +    ++        
Sbjct: 461 VELSDELVRSEPERAVRSMLAQIHYEEYLYEQAVSPKAAEMQSKNVATLFDWVNDMLGGD 520

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E N   +L ++++ L       +       ++V++MT+H +KGLE P VFL+     +  
Sbjct: 521 EFNEPMTLNQVVTRLTLRDMLERGEEDDESDQVQLMTLHASKGLEFPHVFLIGMEEGILP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 581 HQTSID-----------------------------------EDNVEEERRLAYVGITRAQ 605

Query: 660 DQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
             L   +CK      E    + + + +            K  +T    +++ +A
Sbjct: 606 RTLRFTLCKERRQFGELLKPEPSRFLLELPQDDLQWERDKPPMTEEQKQEKAVA 659


>gi|260900330|ref|ZP_05908725.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ4037]
 gi|308108575|gb|EFO46115.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ4037]
          Length = 1227

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 161/1021 (15%), Positives = 312/1021 (30%), Gaps = 167/1021 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMET-------GNPTIL-----KKAQTLQQASQT 59
            +     + LW  P   +SDI+ Y++ +  +       G+   L     KK   L+ A   
Sbjct: 196  TLAGEIRQLWSSPSALLSDISNYLTGAPLSLSVPAMKGSLADLHTENLKKIDELK-AQWR 254

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------ 105
            +  ++ F+L+S   + ++   +K++ T                D  +KL+K         
Sbjct: 255  ESQDDFFTLISDSDINKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEK 314

Query: 106  ---------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                        +  + F    +           ++       AK +   L F+DL+   
Sbjct: 315  TPKGSAPQHAVFEAIETFLANPISLKAPLLAHAIEHCRVMLANAKNQKQWLSFDDLLTQ- 373

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                   D S  +  +I       +IDE QDT  +Q+ +   +          ++    L
Sbjct: 374  LSASIDTDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIY--------LNNPECGL 425

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++
Sbjct: 426  FMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVQAVNQ 475

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS- 335
            VF++P++      D    I     +       ++W         Q  P    W    D  
Sbjct: 476  VFALPDSPFIYDSD----IPFLPVKYSPNAEKRIWTM-----GGQKQPALTYWLQEADDK 526

Query: 336  -LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
             LP+    + +A   A  I  ++     G   + +  K++ +QA DI VLVR   +  +I
Sbjct: 527  PLPKGEYLTRMAEATASQIQTILTQAQQGQACLVNGEKQKAVQAGDIAVLVRTGSEGRMI 586

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                + L +    SV  ++R  +      +DL  L + +L+ E+D +    L S LF   
Sbjct: 587  K---QALADQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALD 643

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               +  +           E + + A     +++ +      L  +    S       +L 
Sbjct: 644  AASLDALNND--------EIVWENAVNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLE 695

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKR 563
                 Q          +  + E L        + +  L+ L   +              +
Sbjct: 696  EGASSQGENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAENGLGGSDDQIQ 755

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               +  N V+I+T+H +KGLE  +VFL                      ++         
Sbjct: 756  RLESERNLVQIVTIHKSKGLEYDLVFLPFV-------------FSYREASEAKYYDAAND 802

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
            ++          IK   K    E  RL+YV +TRA     I      +          + 
Sbjct: 803  RTVLDITGNDASIKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGVHR 862

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                    + +   I         +    +          LE +    Q        K+L
Sbjct: 863  SAIGYLIQNGQEGGINDLYQGLTKQQDELDCVVVADPPQQLEEKYVAPQEEIHDLSAKEL 922

Query: 744  FSPIKNDINEPYIL-------------------------NPSTIDTKGKTNLESLLSDNQ 778
             +PI  +                                +    +        S+ +  +
Sbjct: 923  KNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEADLLEPERSIFTFPR 982

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPM- 836
                G  +H L + I        +           ++    +    L   I  +L  P+ 
Sbjct: 983  GARPGTFLHSLFEEIEFTQPATSEENTQIILGLMESEQLDEEWLPILQQLIDTVLVTPLD 1042

Query: 837  -----MTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISG 866
                 +          E+     I       +                         + G
Sbjct: 1043 GKSLLLNQKAPSQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGMLKG 1102

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKDSYPN 917
             ID +   Q   ++ ++K++H          E +      + +  Q  IY   L     +
Sbjct: 1103 FIDLVFEHQGKYYVLDWKSNHLGDDVTHYHGEALKSAMADHRYDLQYQIYALALHRFLRS 1162

Query: 918  K 918
            +
Sbjct: 1163 R 1163


>gi|329901071|ref|ZP_08272696.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549259|gb|EGF33838.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 753

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 105/713 (14%), Positives = 226/713 (31%), Gaps = 152/713 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L S   + + +  K ++ + +N        +           +D
Sbjct: 96  LRAHHRDAGLPQTFQILDS---SDQLSMIKRML-KALNVDDEKFPPR--NLMYFINGAKD 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    K   ++         L  +Y+   ++  V+DF +L++ T +L+ +      +R  
Sbjct: 150 QGLRAKDVDASDDYNRRMVELYDYYDNQCQREGVVDFAELLLRTYELMSRN---QPLREH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ +                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNNLQYNWLKLMAGKRGA----------VFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +R    +        ++I+L  ++RS   IL   + + +      G +  + 
Sbjct: 257 NVGNMSAFEREFDVQ--------NLIKLEQNYRSHGHILDTANLLIANNTKRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + +S  + A+ I   
Sbjct: 309 ---------AGHGEPVRIY--------------------------ESTSDLLEAQWIIEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
             ++I    +            +I VL R    + +I            I          
Sbjct: 334 AKSLINEGAL----------RSEIAVLYRSNAQSRVIEHAL----FSAGIPYKVYGGQRY 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471
            +   +K  +A  + + +  +D +F+ ++  P        + ++    R    ++Y  + 
Sbjct: 380 FERAEVKSAIAYLQLMDNLHNDSAFLRVVNFPTRGIGARSLEQLQDAARAHNLSLYAAVP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLD 530
             A    S     IK I          +  +   ++L A      + +   G + ++ L+
Sbjct: 440 HVAGKAGSSLGAFIKLIESTRFETAQLALPEMVNVVLAASGLIAHYRNEKEGADRVENLE 499

Query: 531 EFLNFTLRNEQNSYSSLQE-------------------------------------LISE 553
           + +N                                                    L + 
Sbjct: 500 QLVNAATVFVNEEGFGHDAPAFLGPQSAPASGTAIVLDDGFEVLDADAPLPAVMSPLSAF 559

Query: 554 LEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           L            SA  + +++MTVH+AKGLE   VF+      +F H++          
Sbjct: 560 LSHASLEAGDNQASAGQDAMQLMTVHSAKGLEFDTVFITGLEEGLFPHEN---------- 609

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS- 671
                                      +++  EE  RL+YV +TRA  +L +        
Sbjct: 610 ------------------------AQKEEAGVEEERRLMYVAITRARKRLYMSFSQTRML 645

Query: 672 -NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
             + + N ++ +              KI+     +  +    +       +  
Sbjct: 646 HGQTRYNLKSRFFAELPEESLKWLSPKIQPFYRYDSPKAAWVDAPVVPALSQQ 698


>gi|229513960|ref|ZP_04403422.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21]
 gi|229349141|gb|EEO14098.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21]
          Length = 1208

 Score =  261 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 147/1017 (14%), Positives = 292/1017 (28%), Gaps = 166/1017 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSL----SMETGNPTILKKAQTLQQASQTQCIEERFS 67
            S     + LWP P   +++I  Y+S              L   Q  Q A  ++  +   +
Sbjct: 183  SLASEVRRLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARISEIKQHWLA 242

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS------QDEFIKIRDRFNTYKMFK 121
                  L    +         + ++ P L    +          E  +        K  K
Sbjct: 243  EREEIELAVTGSDLHKNSQNALLRRLPILDAWAQSETHDLHVPSELEEFTQSGLLAKSKK 302

Query: 122  STLASLTLAKYLNA--------------------HY--EEAKKKNCVLDFEDLIINTNDL 159
                 L L + + A                     Y   +AK  +  L F+DL+   +  
Sbjct: 303  GNPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRYWLAKAKSTHHWLSFDDLLTQLSAA 362

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            L   D    +  +I       +IDE QDT  +Q+ +   L  D+            L  +
Sbjct: 363  L-DNDEQGLLGERIRALYPVAMIDEFQDTDPLQYSIFSRLYLDY--------PQCGLLMI 413

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD KQ+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS
Sbjct: 414  GDPKQAIYAFRGADIFTYIKARNQVSPHYT----------LGTNWRSSAAMVAAVNQVFS 463

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
               +    S+D    I  +          + W        +      E          + 
Sbjct: 464  SATHPFIYSDD----IPFQPVAASPGADKRHWTLEGQVQPALTYWWPEDLDKP---QSKT 516

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLK 397
               + +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L 
Sbjct: 517  DYYAQMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALS 573

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                 SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  + 
Sbjct: 574  QQGIASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAIASNLFALTASELDALN 633

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               +E E +    +++        + V+  +  ++               L   +G +  
Sbjct: 634  NDENEWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLVESEGERWL 685

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNE 571
                       + E L    R   +    L+ L   +              +   +    
Sbjct: 686  TDYL------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRL 739

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            V+I+T+H +KGLE P+VFL    S                 ++          +      
Sbjct: 740  VQIVTIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTG 786

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD-------- 683
              D +    +    E  RLLYV +TRA     I      +      Q + +         
Sbjct: 787  NEDALAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEQTSAHRSAMGFLLQ 846

Query: 684  ------------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
                         +     N   V +        +                  +  +   
Sbjct: 847  DGQESGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPKLDERELTARELSQAIDRRW 906

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNR 782
            ++     +  +      + + E  +L     D       +    +          +    
Sbjct: 907  RVTSYSGLVMQSSHARHDPLQEFPLLEVGGFDLDSAQERDGAAFESVERSIFNFPRGARP 966

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------ 835
            G  +H L + +        +           ++   A+    L   +  +L  P      
Sbjct: 967  GTFLHSLFEEVDFQQSAHSEPNTKIILELMESEQIEAEWLPVLQHLVDTVLSTPLDGKAL 1026

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQ 870
             +   M+    +E+     I       +                         + G ID 
Sbjct: 1027 RLQQIMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHAVQGMLKGFIDL 1086

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            +   Q   ++ ++K++H       + P           +  Q  IY   L     ++
Sbjct: 1087 VFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|197287123|ref|YP_002152995.1| ATP-dependent DNA helicase Rep [Proteus mirabilis HI4320]
 gi|194684610|emb|CAR46496.1| ATP-dependent DNA helicase [Proteus mirabilis HI4320]
          Length = 673

 Score =  261 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 109/656 (16%), Positives = 218/656 (33%), Gaps = 124/656 (18%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S F  Q  +     +T ++ ++  DL  +LK     +               +    T A
Sbjct: 106 SLFDDQDQSALLKELTVDLLEEDKDLLSQLKSQISNWKNDMLTPEQVIGRAQSQQDHTFA 165

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           +     YE+      VLDF+DLI     LL+  +    +R +  Q I ++L+DE QDT+ 
Sbjct: 166 ECF-RRYEQHLLSCNVLDFDDLISKPTLLLRTNEE---VRARWQQRIRYLLVDEYQDTNT 221

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  +                VGD+ QSIYS+ GA P+ ++  ++   +    
Sbjct: 222 SQYELVKWLVGE----------RARFTVVGDDDQSIYSWRGARPQNLVLLQKDFPQ---- 267

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++I+L  ++RS+  IL   + +     +       S                   
Sbjct: 268 ----LNVIKLEQNYRSSGRILKSANILIENNPHVFEKRLFS------------------- 304

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                           E        +   ++    A R+A           + ++     
Sbjct: 305 ----------------ELGYGDELRVLTANNEEHEAERVA---------GELIAHHFINK 339

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  +L R    + +            +I    +          IKD++A  R I +
Sbjct: 340 TNYKDYAILYRGNHQSRIFEKYL----MQNRIPYRISGETSFFSREEIKDILAYLRVITN 395

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQH 483
            +DD +F+ ++  P        I K+    +   ++++                +S  Q 
Sbjct: 396 PDDDAAFLRIVNKPRREIGPMTIQKLGEWAKVRDKSLFNACFDLGLSQTLTGRGLSALQA 455

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLR 538
             +++  ++  ++          +L               ++     +  +++  ++   
Sbjct: 456 FSQWMARIVQQSEREPLLA-VRDLLHEMDYESWLYETSSSAKAAEMRMKNINQLFSWMSE 514

Query: 539 N----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E +   +L ++++         +       ++V++MT+H +KGLE P VFLV   
Sbjct: 515 MLEGDELHEPMTLSQVVNRFTLRDMMERGETDEELDQVQLMTLHASKGLEFPHVFLVGME 574

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +  H+                                       +   EE  RL YVG
Sbjct: 575 EGILPHQSSID-----------------------------------EDNVEEERRLAYVG 599

Query: 655 MTRASDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           +TRA   L   +CK      E    + + +              K K+ ++  K E
Sbjct: 600 ITRAQKTLTFTLCKERRQYGELIRPEPSRFLYELPQDDLHWDTNKKKVLSAQEKQE 655


>gi|269796045|ref|YP_003315500.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098230|gb|ACZ22666.1| DNA/RNA helicase, superfamily I [Sanguibacter keddieii DSM 10542]
          Length = 1111

 Score =  261 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 134/1037 (12%), Positives = 283/1037 (27%), Gaps = 202/1037 (19%)

Query: 50   AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
            A+ L +AS  Q   +          T            +++    +    + +++++  +
Sbjct: 137  ARLLSEASSWQVASDLVESWHGDLGTDAAVSTVVAAVLDLSNALSEHLLTVAEAREQVAR 196

Query: 110  IRDRFNTYKMFKSTLASLT-------------LAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            + ++  +        +                    +   +++ K+    LDF D +   
Sbjct: 197  LVEQITSTPFGGKRRSLHADLGKLARSLGERHALLEVVEAFQQRKRAMDALDFGDQVSLA 256

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
              L  + D    +          +L+DE QDTS  Q  ++ SL  D             +
Sbjct: 257  AQLAVEVDA---VAAGERARYAVVLLDEYQDTSYAQIRLLSSLFGD----------GHPV 303

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             AVGD  QSIY + GA      R     + R    G+  ++  L  S+R+   IL V + 
Sbjct: 304  TAVGDPNQSIYGWRGASASGPARFPDQFRDR---EGRPAAVHRLSTSWRNDLAILDVANT 360

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
                      L++   +           +G+V        + +                 
Sbjct: 361  ----TSRPLYLADPDNSLPSLEPRPSAGLGSVHGVYSATVEEEGAA-------------- 402

Query: 337  PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                        IA  ++      T  +             VL R R   P I    R  
Sbjct: 403  ------------IAEFVAKRWEPGTTTA------------AVLCRARSQFPAIEAALR-- 436

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 + V       L     + DL+AL   +       S + +L  P  N    D+  +
Sbjct: 437  --KRGLPVEVVGLGGLLTTPEVVDLVALLEVVHDPSRGDSLMRLLTGPRLNLGAADLHAL 494

Query: 457  CTQRHETETVYEYIQK------------------------------FANCGISKFQHVIK 486
             ++  E        +                               F++ G  + + +  
Sbjct: 495  ASRSAELGRRNRADRPVEGDVTDERSIVDALDDLPAEGWVGPDGRSFSDAGWGRLRSLAG 554

Query: 487  YIHELIHIAQFCSPH--DFFTLILGAKKGRQQFISRFGNEV-----------IDVLDEFL 533
             + EL  +     P   D     LG         +R  ++               LD F 
Sbjct: 555  MLRELRALTYLSLPELVDRAERALGLDIEMALVAARARDDAPSTRPTADPRGRAHLDAFR 614

Query: 534  NFTLRN-EQNSYSSLQELISELEQYPPT----IKRAHSANHNEVRIMTVHTAKGLESPVV 588
            +      + +  ++L   ++ L           +   + +   V+++TVH +KGLE  VV
Sbjct: 615  DVAATFADTSQLATLGAFLAWLSTAQQRERGLDRPQGAPDPEAVQLITVHASKGLEWDVV 674

Query: 589  FLVDTGSQVFSHKH--------------IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
             +       F                         P   D   +P         +  ++ 
Sbjct: 675  AVPGLVDGAFPSTRTTGDKGPTSSGWLTGLGQLPFPLRGDARDLPELSLAGADDSAELNA 734

Query: 635  ----LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF- 689
                  +   +    E  RL YV  TRA   L++      S  K S    +   ++++  
Sbjct: 735  RLVDFRERCGEHEVAEERRLAYVAFTRARSDLLLTGAWWRSATKPSTPSLFLTELHEAGV 794

Query: 690  -------HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                      E        +   +  W   +     PE +  E  +    L +  ++ ++
Sbjct: 795  LAEFTVAEQPEPGTSNPREDLTPEALWPPVDEPADGPEGSAAEAADGSATLREPLELLRR 854

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN----QTFNRGLIIHKLLQVIFTLPE 798
                + + + +      ST     +   +          +   R   +   ++    +  
Sbjct: 855  SRDLVLDALVDVAQHPASTEPVLARDGTDLTELSEILLAERLTRRTAV-TAMEFPAHVSA 913

Query: 799  ----------------------------HKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                                         +R      +  +        +  ++  +   
Sbjct: 914  SGLVEIARDRDAYALALRRPVPRQPSVHSRRGTAFHLWVERQYGSTSLFDLDDMPGADDD 973

Query: 831  LLE----NPMMTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISISQQ------- 876
            L++       +        +S    + V   I+     +I   RID + +  +       
Sbjct: 974  LVDGDTALADLQRTFEASVWSGLVPLEVEVAIDTMIAGVITRTRIDAVFLDPEQPGGPDR 1033

Query: 877  --NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKV 932
               + + ++KT                 QL++Y          P + +     YV++   
Sbjct: 1034 APGVVVVDWKTGRAPTDREAARARE--VQLAVYRIAWSQWSGTPLEDVSAAFYYVADDTT 1091

Query: 933  FIIPQNKLNKAFAEIST 949
                +         +  
Sbjct: 1092 VRPQRLAGLAELEALVR 1108


>gi|320104388|ref|YP_004179979.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
 gi|319751670|gb|ADV63430.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
          Length = 841

 Score =  261 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 94/707 (13%), Positives = 202/707 (28%), Gaps = 95/707 (13%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLA------SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +    +  +     +   TLA         LA  +   Y++  ++   +DF+DL+++  
Sbjct: 151 AERLEAVISKAKNDLVAPETLARNAWNHEAVLAARVYPLYQQRLREQSAVDFDDLLLHMV 210

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            +LK       +R  +D     +L+DE QDT+L Q+ ++++L+ D             L 
Sbjct: 211 AILKNHPE---VRKTLDARFRFLLVDEYQDTNLAQYAILKALSVD----------HPNLC 257

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             GD  QSIY++ GA    +L  ++              +++L  ++RST +ILT  D +
Sbjct: 258 VTGDPDQSIYAWRGANIHNILEFEKDFP--------GCKVVKLERNYRSTRNILTTADGL 309

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                  +  +  +           G    V       ++  +                 
Sbjct: 310 IRHNRLRKPKALLTENP-------PGAPVRVVTHANEAAEARAVAAA------------- 349

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                          I + +                 DI +  R    T  +    R   
Sbjct: 350 ---------------IRDRVD---------HHGFSYSDIAIFCRVTALTRNLESALRS-- 383

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
              +I           +   +KDL+A  +  ++ +DD++F  ++ +P     +  +  + 
Sbjct: 384 --ARIPYQVVGGVAFYERQEVKDLLAYLKLAVNPKDDVAFERVVNTPPRGLGQTTLDHLR 441

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC------SPHDFFTLILGAK 511
                         + A    +      + + +   +                  +L   
Sbjct: 442 AYASRVGIPLLRAAREAQQVAAIKDKAARSLRDFALLMDELATLRDQPAEAALRSVLALT 501

Query: 512 KGRQQFISRFGNEVID---VLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTIKRAHSA 567
             R         E  +    LDE ++     +      +L   + E+       +    A
Sbjct: 502 SYRAYLAEAPQGEAEERLANLDELVSAAREYDATHTEPTLDGFLEEVSLISAVDRMRDDA 561

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               V +MT+H AKGLE PVVF++     +  H    +                    K 
Sbjct: 562 G--AVAVMTLHAAKGLEFPVVFIIGLEEGILPHSRSSESREELEEERRLLFVGITRAQKE 619

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA-----SDQLIICKHSNTSNEKKSNQRTWY 682
                  + ++  +      +  L      +                     ++ Q +  
Sbjct: 620 LTISHCKIREYRGQRQVMIPSCFLNELPEESVEYEDRSAREPSGFHWVEGNHRAFQSSGR 679

Query: 683 DMVYDS---FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
           +           +    + +   S   D+      +       P+ R          Q  
Sbjct: 680 NGASWGLVPREPNHPAGRPRTMRSPTHDDDAIDPPAGDDLPEVPIGRPAASSGSSSSQST 739

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
             ++ +        P   +            +    D +    G  +
Sbjct: 740 GFRMITAADLAGAHPTHSSQDEPGQSPDPIQKLGPQDVERLKPGTAV 786


>gi|332036801|gb|EGI73263.1| ATP-dependent DNA helicase Rep [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 672

 Score =  261 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 100/620 (16%), Positives = 194/620 (31%), Gaps = 120/620 (19%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                + ++      L   L A Y+   +    LDF+DLI+    LL     S   R + 
Sbjct: 148 LPEQAIREARDPQKALFAQLYARYQNQLRAYNALDFDDLIMIPTLLLTNNATS---RERW 204

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            Q   ++L+DE QDT+  Q+++++ L  +                VGD+ QSIYS+ GA 
Sbjct: 205 QQRFKYLLVDEYQDTNTSQYQLVKLLVGE----------RARFTVVGDDDQSIYSWRGAR 254

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
           P+ ++   +              +I+L  ++RS   IL   + + +   +       S  
Sbjct: 255 PQNLVLLGKDYP--------GLRLIKLEQNYRSAGRILKAANILIANNPHDIEKKLFS-- 304

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                                           +  +      +          R +A  I
Sbjct: 305 --------------------------------ELGYGEPIKVIGCRDEEHESERVVAEII 332

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                     S+   +    KD  +L R                   +I    +      
Sbjct: 333 ----------SHKFMKRTSYKDYAILYRGNHQARGFEKSL----MSNRIPYKISGGMSFF 378

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK 472
               IKD+MA  R +++Q+DD +F+ ++ +P        + K+ T    +  +++     
Sbjct: 379 ARSEIKDIMAYLRLLVNQDDDNAFLRIVNTPRREIGTVTLEKLGTLANEKHASLFATCFD 438

Query: 473 FANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRF 521
                  K           +++ EL   A      +    ++               ++ 
Sbjct: 439 NDLGYRLKGRGFNALAGFARWVVELSDNAVRGDTLEAVKDLVRNINYEAYLYESSPSAKA 498

Query: 522 GNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
               +  + E   +          N   +L E++S+L       +       + V + T+
Sbjct: 499 AEMRMKNVSELYRWITDMLTGDADNEPMTLAEVVSKLTLRDMLERNEEEDETDAVHLSTL 558

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE P VF+V     +  H+                                    
Sbjct: 559 HASKGLEYPYVFMVGMEEGLLPHQVSID-------------------------------- 586

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              +   +E  RL YVG+TRA  +L +          +++Q      V +   +D   + 
Sbjct: 587 ---EDNVDEERRLAYVGITRAQQELTLTYAKIRRQFGETSQTELSRFVQELPQDDLAFEN 643

Query: 698 IKLTNSINKDEWIAYEWSTH 717
            K  N+  +          +
Sbjct: 644 KKAPNTQAERMEKGQARVAN 663


>gi|240948326|ref|ZP_04752712.1| ATP-dependent DNA helicase [Actinobacillus minor NM305]
 gi|240297365|gb|EER47906.1| ATP-dependent DNA helicase [Actinobacillus minor NM305]
          Length = 672

 Score =  261 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 104/603 (17%), Positives = 212/603 (35%), Gaps = 123/603 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +  +    Y+   +    LDF+DLI+    L ++   +     +  Q+I ++L+DE QD
Sbjct: 162 RVFSHFYQLYQNQLRAYNALDFDDLIMLPVLLFRQFPEAK---ERWQQKIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+I+ +                   VGD+ QSIYS+ GA+P+ + R +      
Sbjct: 219 TNTSQYELIKLIVG----------KEANFTVVGDDDQSIYSWRGAKPENMQRLRENF--- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + +    ++       S      + +       
Sbjct: 266 ------DLKVIKLEQNYRSSQRILHCANILIDNNDHIFQKRLFSQLGEGEKLN------- 312

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                       + +  +    A RI            + ++  
Sbjct: 313 ----------------------------VIEAKNEEHEAERIV---------GELIAHRF 335

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +  + KD  +L R    + L+      L    +I    +          IKD+MA  R 
Sbjct: 336 SKKTKYKDYAILYRGNHQSRLLEK----LLMQNRIPYKISGGTSFFARAEIKDMMAYLRL 391

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISK 480
           +++Q+DD +F+ ++  P        + K+      +  +++E       IQ+        
Sbjct: 392 VVNQDDDAAFLRIVNVPKREIGAATLEKLGQLANEKQISLFEAIFDFELIQRLTPKPYQA 451

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF--------ISRFGNEVIDVLDEF 532
            Q    +I ++   A+   P +    +L   +              +   ++ ++ L E+
Sbjct: 452 LQDFAHWIVKIADQAERVDPLEAVKDLLSHIQYEAYLYETATSPKAAEMQSKNVETLFEW 511

Query: 533 LNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           +   L  ++     +L ++++ L       +       ++V++MT+H +KGLE P VFL+
Sbjct: 512 VQSMLEGDELEEPMTLVQVVNRLTLRDMLERSEEDDETDQVQLMTLHASKGLEFPHVFLI 571

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  H+                                       +   EE  RL 
Sbjct: 572 GMEEGILPHQTSLD-----------------------------------EDNVEEERRLA 596

Query: 652 YVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           YVG+TRA   L   +CK      E    + + + +            K K+T +   ++ 
Sbjct: 597 YVGITRAQQTLTFSLCKERRQYGEVIQTEPSRFLLELPQDDLMWERDKPKMTEAEKVEKT 656

Query: 710 IAY 712
            A+
Sbjct: 657 SAH 659


>gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300072560|gb|ADJ61959.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 759

 Score =  261 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 90/574 (15%), Positives = 182/574 (31%), Gaps = 144/574 (25%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y++  ++  V+DF +L++ T +LL +      +R        HIL+DE QDT+ +
Sbjct: 169 ELYELYDQQCQREGVVDFAELLLRTYELLSRN---QPLREHYQSRFRHILVDEFQDTNDL 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q++ ++ +                +FAVGD+ QSIY+F GA    +   ++    +    
Sbjct: 226 QYKWLKLMAGQ----------HNAVFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQ---- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               ++I+L  ++RS   IL   +++ +      G +  +           G    V+++
Sbjct: 272 ----NLIKLEQNYRSHGHILDTANELIANNSKRLGKNLRTD---------AGHGEQVRVY 318

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                     + +S    A+ I   + ++I              
Sbjct: 319 --------------------------EATSDLQEAQWIIEQVKDLIAEGWA--------- 343

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I +L R    + ++            I           +   IK  +A  + + + 
Sbjct: 344 -RSEIAILYRSNAQSRVLEHAL----FSSAIPYRVYGGQRFFERAEIKHAIAYLQLMDNL 398

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            +D +F+ ++  P        +  +    R    ++Y  +   A    S     +K I  
Sbjct: 399 HNDSAFLRVVNFPTRGIGAKAMESLQDAARQYGCSLYAAVPYVAGKAGSSLNAFVKLIEG 458

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
                Q     +   ++L        + +   G + I+ L++ ++            L  
Sbjct: 459 ARFETQHLPLPEMVKVVLDLSGLMTHYRNEKEGADRIENLEQLVSAATLFVSEEGYGLDA 518

Query: 550 -------------------------------------LISELEQYPPTI-KRAHSANHNE 571
                                                L + L             A  + 
Sbjct: 519 PAFLGPQAQATAGAAITTADGVEVLDADAPLVTIMSPLSAFLSHASLEAGDNQAQAGQDA 578

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +++MTVH+AKGLE   VF+      +F H++  K                          
Sbjct: 579 LQLMTVHSAKGLEFDAVFITGMEEGLFPHENSAKEEGGVEEERR---------------- 622

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                             L+YV +TRA  +L + 
Sbjct: 623 ------------------LMYVAITRARKRLFMT 638


>gi|269959490|ref|ZP_06173873.1| ATP-dependent DNA helicase Rep [Vibrio harveyi 1DA3]
 gi|269835927|gb|EEZ90003.1| ATP-dependent DNA helicase Rep [Vibrio harveyi 1DA3]
          Length = 609

 Score =  261 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 97/660 (14%), Positives = 219/660 (33%), Gaps = 125/660 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L++ L    +    +        + +       L  +   
Sbjct: 50  DQLALLKELTEKQLDGDKDLLRQLLSSISNWKNDMLTPEQAKALAQGEQQ--QLFAFCFE 107

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI     LL+  +    +R +    I ++L+DE QDT+  Q+++
Sbjct: 108 MYQKQMKAYNALDFDDLISLPVQLLRNNEE---VRQRWQNRIRYLLVDEYQDTNTSQYDL 164

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 165 VKLIVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDYPN--------L 206

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 207 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP--------------------- 245

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + ++       +           A R+         T  + ++      + KD
Sbjct: 246 -------DGEKLKVLLAKN-------EEHEAERV---------TGELIAHKFLNRTEYKD 282

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 283 YAILYRGNHQSRLIEKSL----MQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 338

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +   +++
Sbjct: 339 AFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFEVSFEMGLEQHLTGRGLENLRRFTQWL 398

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLR----- 538
             +   A+     +    ++                +     +  + +  ++ +      
Sbjct: 399 VAIADQAERGDTVEAVRSLVRDIHYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 458

Query: 539 -NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +Q    +L+E++  L       +     + + V++MT+H +KGLE P V+L+ +   +
Sbjct: 459 NYDQEE-KTLKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHASKGLEFPFVYLIGSEEGI 517

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H+                                       +   EE  RL+YVG+TR
Sbjct: 518 LPHQTSID-----------------------------------EDNVEEERRLMYVGITR 542

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L            +  + T    + +   +D   +  K   S  +          +
Sbjct: 543 AQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEVNKKPVSAEERMAKGQAHIAN 602


>gi|262280027|ref|ZP_06057812.1| superfamily I DNA and RNA helicase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260378|gb|EEY79111.1| superfamily I DNA and RNA helicase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 679

 Score =  261 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 215/632 (34%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ I      +T +  +          +L   YE  
Sbjct: 127 RDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETPEDVQ-----FAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQEN---AEVRDKWQNRVRYLLVDEYQDTNTAQYILVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   K+              II+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLKQDFPN--------LHIIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  ++   +  ++D 
Sbjct: 281 EQNYRSTSRILKAANCVIQNNPHIFDKKLWSDK------------GHGEVIRIITCRNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A R+   + +++    +           KD  VL 
Sbjct: 329 D-----------------------EAERV---VKDLLTHKLMNGK------NWKDYAVLY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARVLETQLRQMQ----IPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHEL-I 492
           + +P        + K+    +    ++                  ++      +I     
Sbjct: 413 INTPKRAIGPVTLEKLGLFSQENNLSLLGASADQRLSMVLPKKAETQLHEFADFIATFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNFTL----RNEQNS 543
            + +   P      ++           +           D ++   N       R E   
Sbjct: 473 ELLEDDEPVPKVRQMMNEAGYMDYVREQSATPAQEKSKLDNIENLFNSIQNLINRAEDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I +L       ++    + ++V ++T+H AKGLE P V+++    ++  HK+ 
Sbjct: 533 EKNIESVIRKLVLLDLLEQQQEEEDTDKVNLLTLHAAKGLEFPYVYIMGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IAAETIEEERRLMYVGITRARQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   ++   
Sbjct: 618 LTLAEQRKNGGQMRQMTPSRFLDELPQDELEW 649


>gi|163802370|ref|ZP_02196264.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4]
 gi|159173899|gb|EDP58713.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4]
          Length = 1212

 Score =  261 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 156/1021 (15%), Positives = 311/1021 (30%), Gaps = 167/1021 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGN------------PTILKKAQTLQQASQT 59
            +     + LW  P   + DI+ Y++ +  + +               LK+   L+ A   
Sbjct: 181  ALAGEVRQLWGSPSELLYDISHYLTGAQLSLSVPAMQGSLAELHEQNLKQIDALK-AQWR 239

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------ 105
               ++  +L+S   + ++   +K++ T                D  +KL+K         
Sbjct: 240  DSQDDFLTLISDSDVNKRSYTKKSLPTWLEVVNAWAATETTGYDYPDKLEKFAQNVLFEK 299

Query: 106  ---------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                        +  + F    +           ++      +AKK+   L F+DL+   
Sbjct: 300  TAKGSAPQHPMFEAIEAFLANPISLKAPLLAHAIEHGRVMLAKAKKQKQWLSFDDLLTQ- 358

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                   D SA +  +I       +IDE QDT  +Q+ +   +  D        +    L
Sbjct: 359  LSASIDSDESALLTDRIRTLYPVAMIDEFQDTDPLQYSIFSRIYLD--------NPECGL 410

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F +GD KQ+IY F GA+    ++ +       T          L  ++RS AD++  V++
Sbjct: 411  FMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSGADMVQAVNQ 460

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS- 335
            VFS+P++         T I   +         ++W         Q  P    W    +  
Sbjct: 461  VFSLPDSPF----IYDTDIPFHAVNYSPSADKRVWTM-----GGQKQPALTYWLQAAEDK 511

Query: 336  -LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
             L +    +++A   A  I  ++     G   + +  K++ ++A DI VLVR   +   I
Sbjct: 512  PLAKGEYLTVMAEATASQIQTILTAAQRGQACLVNGEKQKPVKAGDIAVLVRTGSEGRKI 571

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                + L +    SV  ++R  +      +DL  L + +L+ E+D +    L S LF   
Sbjct: 572  K---QALADQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALD 628

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               +  +           E +   A     +++ +      L  +    S       +L 
Sbjct: 629  AASLDALNND--------EAVWDNAVNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLE 680

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKR 563
                 Q          +  + E L        + +  L+ L   +              +
Sbjct: 681  QGASSQSENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAEHGLGGSDDQIQ 740

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               +  N V+I+T+H +KGLE  +VFL                      ++         
Sbjct: 741  RLESERNLVQIVTIHKSKGLEYELVFLPFV-------------FSYREASEAKYYDAEND 787

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWY 682
            ++          +K   K    E  RL+YV +TRA     I           K      +
Sbjct: 788  RTVLDITGNDASLKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGVHH 847

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER--------EETIKQLM 734
              +     N +      L   ++K +          P    +ER        E    + +
Sbjct: 848  SAIGYLVQNGQEGGINDLFVGLSKQQENLDSVVICEPPKQHVERYVAEQSELEALTAKEL 907

Query: 735  DEQKIPKKLFSPI---------KNDINEPYIL-------NPSTIDTKGKTNLESLLSDNQ 778
             +        +             + +    +       +    +        S+ +  +
Sbjct: 908  QKPIDRNWRITSYSGLIKQGSHHAEHDATIEITGFDIDSSEEQDEAALVEPERSIFNFPR 967

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP-- 835
                G  +H L + I        +           ++    +    L   I  +L  P  
Sbjct: 968  GARPGTFLHSLFEEIEFTQPATTEENSQIILGLMESEQLDEEWLPILQKLIDTVLATPLD 1027

Query: 836  ----MMTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISG 866
                 +    +     E+     I       +                         + G
Sbjct: 1028 SKALQLNQKGTAQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGMLKG 1087

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPN 917
             ID +   Q   ++ ++K++H             +     + +  Q  IY   L     +
Sbjct: 1088 FIDLVFEHQGKYYVLDWKSNHLGDDVCHYHGDALKSAMADHRYDLQYQIYALALHRFLRS 1147

Query: 918  K 918
            +
Sbjct: 1148 R 1148


>gi|299771291|ref|YP_003733317.1| ATP-dependent DNA helicase rep [Acinetobacter sp. DR1]
 gi|298701379|gb|ADI91944.1| ATP-dependent DNA helicase rep [Acinetobacter sp. DR1]
          Length = 679

 Score =  261 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 215/632 (34%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ I      +T +  +          +L   YE  
Sbjct: 127 RDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETPEDVQ-----FAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQEN---AEVRDKWQNRVRYLLVDEYQDTNTAQYILVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   K+              II+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLKQDFPN--------LQIIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  ++   +  ++D 
Sbjct: 281 EQNYRSTSRILKAANCVIQNNPHIFDKKLWSDK------------GHGEVIRIITCRNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A R+   + +++    +           KD  VL 
Sbjct: 329 D-----------------------EAERV---VKDLLTHKLMNGK------NWKDYAVLY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARVLETQLRQMQ----IPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHEL-I 492
           + +P        + K+    +    ++                  ++      +I     
Sbjct: 413 INTPKRAIGPVTLEKLGLFSQENNLSLLGASADQRLSMVLPKKAETQLHEFADFIATFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFL----NFTLRNEQNS 543
            + +   P      ++           +           D ++       N   R E   
Sbjct: 473 ELLEDDEPVPKVRQMMNEAGYMDYVREQSATPAQEKSKLDNIENLFTSIQNLINRAEDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I +L       ++    + ++V ++T+H AKGLE P V+++    ++  HK+ 
Sbjct: 533 EKNIESVIRKLVLLDLLEQQQEEEDTDKVNLLTLHAAKGLEFPYVYIMGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IAAETIEEERRLMYVGITRARQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   ++   
Sbjct: 618 LTLAEQRKNGGQMKQMTPSRFLDELPQDELEW 649


>gi|90419186|ref|ZP_01227096.1| uvrD/REP helicase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336123|gb|EAS49864.1| uvrD/REP helicase [Aurantimonas manganoxydans SI85-9A1]
          Length = 852

 Score =  261 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 102/576 (17%), Positives = 184/576 (31%), Gaps = 132/576 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y+   +     DF DL+++   + +       +  +      +IL+DE QDT++
Sbjct: 178 RELYAAYQARLQSLNACDFGDLLLHPIAIFRDNPD---VLAEYHDRFRYILVDEYQDTNV 234

Query: 191 IQWEVIRSLTE-------------------------DFFVGKNTHSSPRTLFAVGDEKQS 225
            Q+  +R L +                         D      +      +  VGD+ QS
Sbjct: 235 AQYLWLRLLAQRSQARGERSTPLRRVAAAVTHSGVADAGGAGESDPPAVNICCVGDDDQS 294

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY + GAE   +LR  R             ++I L  ++RSTA IL     + +  E+  
Sbjct: 295 IYGWRGAEVDNILRFDRDFP--------GATVIRLERNYRSTAHILGAASHLIAHNEDRL 346

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
           G +  +                            S  + Q+    + +DS  +       
Sbjct: 347 GKTLFTDH--------------------------SDPDHQKVEVNAGWDSEEE------- 373

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           AR I   I ++   +              D+ +LVR              +     ++  
Sbjct: 374 ARAIGEAIEDLQRREDH---------NLNDMAILVRASFQMREFEDRFVTM----GLNYR 420

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETE 464
                   + + ++D +A  R +    DDL+F  ++ +P     +  +  +    R    
Sbjct: 421 VIGGPRFYERMEVRDALAYFRCVCQPADDLAFERIVNTPKRGLGDATMRLLHDYARARGV 480

Query: 465 TVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            +          ++      +  + V+  +             D    IL      + + 
Sbjct: 481 PLIAAAVEMVETEELKPKPRNALRRVVTDLVRWAEQLSTAKHTDLAEQILEESGYTEMWQ 540

Query: 519 SRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           +    E    ++ L E +      +         L S LE     +    +A  + V IM
Sbjct: 541 NDRSAEAPGRLENLKELIRSMEAYDT--------LPSFLEHVALVMDTEQNAEMDAVSIM 592

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE   VFL      +F H+                                  
Sbjct: 593 TLHAAKGLEFETVFLPGWEEGLFPHQR--------------------------------A 620

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           +    +S  EE  RL YVG+TR   ++ I   SN  
Sbjct: 621 LDEGGRSGLEEERRLAYVGITRGKQRVKIWFVSNRR 656


>gi|331006665|ref|ZP_08329945.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
           IMCC1989]
 gi|330419518|gb|EGG93904.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium
           IMCC1989]
          Length = 745

 Score =  261 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 100/580 (17%), Positives = 187/580 (32%), Gaps = 124/580 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YEE  +   ++DF +L++  ++LL        I     +    IL+DE QDT+ I
Sbjct: 181 QIYTAYEEICRSGGLVDFGELLLRAHELLLNNPD---ILQHYQRRFPFILVDEFQDTNTI 237

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L  +             + AVGD+ QSIY + GA+ + + R     ++     
Sbjct: 238 QYAWLRVLAGN----------TGCVTAVGDDDQSIYGWRGAKIENIQRFTDDFKQS---- 283

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + L  ++RST  IL   + V        G                         
Sbjct: 284 ----QTVRLEQNYRSTGLILKAANGVIQNNFGRLGKEL---------------------- 317

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  S  + F+   +       AR I  +I   +              
Sbjct: 318 ------RTDAGDGEPLSLYAAFNEHDE-------ARFIVESIQQWVKEGN---------- 354

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +   I +L R    + ++            I+          D L IK+ ++  R +++ 
Sbjct: 355 RYDSIAILYRSNAQSRVLEEAL----LRENIAYRIYGGQRFYDRLEIKNALSYLRLLVNN 410

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH------V 484
            DD +F  ++ +P        + +I    R E  ++++  Q+  +  I   +        
Sbjct: 411 NDDTAFERVINTPTRGIGGKTVEQIRLFARQEGCSLWDSAQRMVDEKILTPRASGAVNVF 470

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ I +L       S  +    ++      +   +  G +     + L+E +N       
Sbjct: 471 LQLIRQLQVQTLESSLDEQADKVIKQSGLYEFHKNEKGEKGQARAENLEELVNACRAFNP 530

Query: 540 -------EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                  +Q        L+  L+       +       + V++MT+H+AKGLE   VF+ 
Sbjct: 531 NDLATQTDQEQQEDAPLLVQFLDSASLDAGEGQADEFDDAVQLMTLHSAKGLEFSRVFMA 590

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +F H+                                           EE  RL 
Sbjct: 591 GVEENLFPHRMS----------------------------------ADDPERLEEERRLC 616

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           YVG+TRA  +L I            N       V +   +
Sbjct: 617 YVGITRAMVKLTISYAETRRMHGTENFNRVSRFVKEIPSD 656


>gi|260770678|ref|ZP_05879608.1| ATP-dependent DNA helicase Rep [Vibrio furnissii CIP 102972]
 gi|260614259|gb|EEX39448.1| ATP-dependent DNA helicase Rep [Vibrio furnissii CIP 102972]
 gi|315178566|gb|ADT85480.1| ATP-dependent DNA helicase Rep [Vibrio furnissii NCTC 11218]
          Length = 671

 Score =  261 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 221/660 (33%), Gaps = 125/660 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L++      +    +          +       L  +   
Sbjct: 112 DQLALLKELTEKQLDGDKDLLRQLTSTISNWKNDMLSPEQAKAQAQGEQQ--QLFAFCYE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  +    LDF+DLI+    LL+  D    +R +    I ++L+DE QDT+  Q+E+
Sbjct: 170 MYQKQMQAYNALDFDDLILMPVLLLRHHDE---VRQRWRNRIRYLLVDEYQDTNSSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +             L  VGD+ QSIYS+ GA+P+ ++   +             
Sbjct: 227 VKLLVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGQDFPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S           G+   V L     
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP-------DGEKLKVVL----- 316

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                                   ++    A ++   I          ++      + +D
Sbjct: 317 -----------------------ANNEDHEAEKVTAEI---------IAHKFLNRTEYRD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----MQNRVPYKLSGGTSFFSRAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +   +++
Sbjct: 401 AFLRIVNTPRREIGPATLEKLGSYANMRGKSLFECSFELGLEQHLSGRGLENLRRFTQWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLR----- 538
             +   A+  +  D    ++               ++     +  + +  ++ +      
Sbjct: 461 VAIADNAERGNTVDAVRSLVRDIHYEDWLYETSSSAKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 -NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +Q    +L+E++  L       +     + + V++MT+H +KGLE P V+L+     +
Sbjct: 521 NYDQEE-KTLKEVVQRLTLRDMMERGEEDDDSDAVQLMTLHASKGLEFPYVYLIGAEEGI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H+                                       +   EE  RL+YVG+TR
Sbjct: 580 LPHQTSID-----------------------------------EDNVEEERRLMYVGITR 604

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L            +  + T    + +   +D   +  K   S  +          +
Sbjct: 605 AQRELTFVMCKERRQFGELLKPTQSRFLDELPFDDVEWEVKKKPLSQEERMAKGQAHIAN 664


>gi|37528484|ref|NP_931829.1| ATP-dependent DNA helicase Rep [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787922|emb|CAE17039.1| ATP-dependent DNA helicase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 675

 Score =  261 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 101/649 (15%), Positives = 210/649 (32%), Gaps = 122/649 (18%)

Query: 85  ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
           +T ++ ++  DL +KL  +   +               +      A+     Y+      
Sbjct: 120 LTADLLEEDKDLLQKLISTISNWKNDLLSPQQVLALVRSAQEHQFAE-CYRRYDLHLASC 178

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            VLDF+DLI     L+++ +    +R +    I ++L+DE QDT+  Q+++++ L     
Sbjct: 179 NVLDFDDLITKPTLLMQRDEE---VRERWQNRIRYLLVDEYQDTNTSQYQLVKLLVGQ-- 233

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                         VGD+ QSIYS+ GA P+ ++  K    K         ++I+L  ++
Sbjct: 234 --------RARFTVVGDDDQSIYSWRGARPQNLVLLKEDFPK--------LNVIKLEQNY 277

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS+  IL   + + +   +       S              G     + + + ++     
Sbjct: 278 RSSGCILKAANILIANNPHVFEKRLFSEL------------GYGDPLKVITANNE----- 320

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                                A R+            + ++      Q KD  +L R   
Sbjct: 321 ------------------EHEAERVI---------GELMAHHFINKTQYKDYAILYRGNH 353

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            + +   +        +I    +          IKDL+A  R + + EDD +F+ ++ +P
Sbjct: 354 QSRVFEKML----MQNRIPYRISGGTSFFARPEIKDLLAYLRVLTNPEDDSAFLRIVNTP 409

Query: 445 LFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQF 497
                   I K+        +++Y+                +  Q  I ++ E+    + 
Sbjct: 410 RREIGAATIQKLGEWANQRNKSLYQASFDLGLEQSLTGRGLAALQRFIHWMDEITRQVER 469

Query: 498 CSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN----EQNSYSSLQ 548
                    +L                +     +  +++   +        E N   +L 
Sbjct: 470 DPLLA-VRDLLHGMDYESWLYETSPSPKAAEMRMKNINQLFTWMSEMLEGDELNEAMTLS 528

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           ++++         +       ++V++MT+H +KGLE P VFLV     +  H+       
Sbjct: 529 QVVARFTLRDMLERDEDGEEFDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID--- 585

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                           +   +E  RL YVG+TRA  +L      
Sbjct: 586 --------------------------------EENIDEERRLAYVGITRAQRELFFTLCK 613

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                 +  +      +++   +D    + K   +  +           
Sbjct: 614 ERRQYGELIRPEPSRFLHELPQDDLHWPQDKKIVTAEERMQKGQSRIAD 662


>gi|23428614|gb|AAM12391.1| helicase II [Zymomonas mobilis subsp. mobilis CP4]
          Length = 777

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 103/634 (16%), Positives = 190/634 (29%), Gaps = 124/634 (19%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +     +         Y++        DF DL+++   +L +      +         +I
Sbjct: 176 EEDSLLMVKVLRFILAYQKRLLSLNACDFGDLLLHMLVILTQH---REVLDSYHDRFRYI 232

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++DE QDT+  Q+  +R L +            R +  VGD+ QSIYS+ GAE   +LR 
Sbjct: 233 MVDEYQDTNQAQYLWLRLLAQ----------KNRNICCVGDDDQSIYSWRGAEVANILRF 282

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           +               II L  ++RST  IL     + +      G +            
Sbjct: 283 EEDFP--------GAKIIRLEHNYRSTPQILGAASGLITHNNARLGKT------------ 322

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW     +   +       W    +           AR++   + N+   +
Sbjct: 323 ---------LW---TERDQGEKVKIIGVWDGAEE-----------ARQLVADVQNLRRAN 359

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
              +           + +L+R +  +     +         +       F   +   I+D
Sbjct: 360 IPLNK----------MAILIRAQFQSREFEDIFIA----KNLPYRIIGGFRFYERAEIRD 405

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY----------- 469
            +A  R I    DDL+F  ++  P     +  + K+        + Y+            
Sbjct: 406 ALAYLRVIAQPTDDLAFERIVNVPKRGIGKKAMEKLIFISKTRYSKYQAAFLDRIPLAEA 465

Query: 470 ------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                  +   +        ++    E        S  D    +L     +    +    
Sbjct: 466 AEKLVSEKTLGSKITQSLGQLMNDFSEWRKSLSVVSHADVTRKMLDESGYKVMLRAVNDV 525

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           +    L+         E+       +L S LE     +   +    +++ +MT+H AKGL
Sbjct: 526 QSAGRLENLTELARAMEEYD-----DLGSFLEHVSLVMDHENDPIDDKITLMTMHAAKGL 580

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   VFL      VF  +       + S                                
Sbjct: 581 EFDHVFLPGWEEGVFPSQRSLDEGGLNS-------------------------------- 608

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            EE  RL YVG+TRA     I   +N     +    T    + +   +    K +    +
Sbjct: 609 LEEERRLAYVGITRAKKCCTIFHAANRRVYGQWIASTPSRFISELPDDHIEEKSLLRKKT 668

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
               +  A + S +   N+  E      QL   +
Sbjct: 669 PIWRDIWAEDRSKNPAYNSAKEAITPPWQLASRR 702


>gi|152980889|ref|YP_001355282.1| ATP-dependent DNA helicase Rep [Janthinobacterium sp. Marseille]
 gi|151280966|gb|ABR89376.1| ATP-dependent DNA helicase Rep [Janthinobacterium sp. Marseille]
          Length = 686

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 115/733 (15%), Positives = 221/733 (30%), Gaps = 133/733 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            L + E    + K+        VS  +      +      +      L+        ++ 
Sbjct: 69  ALEMQERIAKLLKEPKQAKQLTVSTFHSLGVKILRQEAKEL-----GLKDRFSIMDSDDC 123

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           FSL+    +T      + I T          K  L        + +D             
Sbjct: 124 FSLVQDLAVTTDKQLIRRIQTAMSL-----WKNGLIDPDTALNQAKDEDEAQ-------- 170

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               A  +   Y         +DF+DLI    +L +  +    +R K  + + ++L+DE 
Sbjct: 171 ----AARIYRSYVATLSAYQAVDFDDLIRLPVELFRTNET---VRDKWQRRLRYLLVDEY 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+++ L                  AVGD+ Q+IY++ GA  + + + +    
Sbjct: 224 QDTNTCQYELVKLLVTGV-------GKKPMFTAVGDDDQAIYAWRGATIENLKQLQVDFP 276

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I++L  ++RS+  IL   + V S        S  S   +          
Sbjct: 277 --------DLKIVKLEQNYRSSTRILQAANSVISNNPKLFEKSLWSEHGL---------- 318

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                            +P +       D   ++ +  + A R                 
Sbjct: 319 ----------------GDPVKVMGMQDDDQEAEQIAIMLSAHR----------------- 345

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             +R  +  D  +L R      +I    R      +I    +      D   IKD+++  
Sbjct: 346 -FERRAKFSDYAILYRGNHQARVIEQALR----KERIPYTISGGQSFFDRAEIKDIISYL 400

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEY------IQKFANCGI 478
           R I +Q+DD +F+  + +P     +  +  +     + + +++E         K A+  +
Sbjct: 401 RLIANQDDDPAFIRAVTTPKRGVGQSTLEALGAFAGQWQCSLFEAVFKGGLESKLADRQL 460

Query: 479 SKFQHVIKYIHELIHIAQFCSP-----HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
           +  +    +I+ L   A           D    I         F  R        + +F 
Sbjct: 461 TPLREFGNFINNLERHAHREGHAASLLDDMMKEINYEAYLYDNFDDRQAQSKWQNVIDFT 520

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVVF 589
            +                S L+                  + VR+ T+H +KGLE P VF
Sbjct: 521 AWLKEKGSGGKEGNDPEKSLLDLTQMVALMTMLEGKDEEPDAVRMSTLHASKGLEFPHVF 580

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           LV     +  HK      +                                 +  EE  R
Sbjct: 581 LVGVEEGILPHKGDPDAPVDTLG-----------------------------ARIEEERR 611

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L+YVG+TRA   L +         ++         + +   ++      +      ++  
Sbjct: 612 LMYVGITRAQRSLHVSWCKKRKRAREHVHCDISRFIKEMKLDEGDAVPTEDEVITPQNRL 671

Query: 710 IAYEWSTHHPENT 722
              +     P+  
Sbjct: 672 ANLKALLQKPKAA 684


>gi|146293207|ref|YP_001183631.1| exodeoxyribonuclease V subunit beta [Shewanella putrefaciens CN-32]
 gi|145564897|gb|ABP75832.1| exodeoxyribonuclease V, beta subunit [Shewanella putrefaciens CN-32]
          Length = 1251

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 293/955 (30%), Gaps = 145/955 (15%)

Query: 63   EERFSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDE-FIKIRDRFNTYKMF 120
               F  L ++       P  K +    +++   +    L    +   +   ++       
Sbjct: 275  AAMFDALDNWLAYGNGLPPIKVLEDLSLSELKLNKGGVLPSVSEAPLLDHMEQLAALIKA 334

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                   +  + ++A + + K++  VL  +DL+    + L        +   +       
Sbjct: 335  VKPAFLYSAKQGISARFAKQKQQQNVLTPDDLLTTLAEALNAN--RQTLPKAVASRFPVA 392

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFV-------GKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            LIDE QDT  +Q+ +  S+ +             N   +  +L  +GD KQ+IY+F GA+
Sbjct: 393  LIDEFQDTDPLQFAIFSSIYQPHHAFNLPTDNHLNHAENNLSLLMIGDPKQAIYAFRGAD 452

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                +  ++  +              L  ++RS+ +++  V+ +F+   +          
Sbjct: 453  IYTYIEARKATEAHY----------HLDTNYRSSTNMVAGVNHLFNRHPDPFISQSIPFD 502

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
            +++  SS           + +    ++    +    +   + L + ++   LA   A  I
Sbjct: 503  SVKTPSSAK--------HKILTEPSENPAALRVRLLSETENGLNKTTARHRLANDAAAEI 554

Query: 354  SNMIGTDTIFSNGKKR-VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            + ++ +         +  + AKDI +LVR R +      + +   +  +I  V   R  +
Sbjct: 555  TRLLTSAAHGECYTPKGPLMAKDIAILVRDRNEAA----VMKAALSQRQIGAVFLSRDSV 610

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
             D L  +++  + R + + +D+ +    L + L  ++ + I        + + + E    
Sbjct: 611  FDTLEAREMSLILRSLANPKDERALRSALATALLGYNAEQIHAFNQNEEQRQQLLEQFFD 670

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI----LGAKKGRQQFISRFGNEVIDV 528
                   +       +  L+ +A   S  +         L   + ++             
Sbjct: 671  LHTIWQKR-----GIMPALLSLANSTSLIERLLHAPQPKLDNNQEQETTYGERRLTDFRH 725

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKG 582
            L E L      +      +  L++  EQ           +    +  N V+I+T+H +KG
Sbjct: 726  LAELLQQ----KATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKG 781

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PV F+        + +    M             +W  +            +  ++ 
Sbjct: 782  LEYPVCFVPFVSLARDNRRRPTPMLYHKINQTHGQALVWDIEGTEEG------WEQFRQE 835

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSN----TSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
            T  E  RLLYV +TR      +   ++     +  K     T    +      D    +I
Sbjct: 836  TLAEDLRLLYVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGITDADCDFNRI 895

Query: 699  KLTNSINKDEWIAYEWSTHHPEN--TPLEREETIKQLMDEQKIPKKLFSPIK-------- 748
                        A        E     L       Q +  + I ++  +P +        
Sbjct: 896  SQAAQNLAQRIDAISIDKIPEETSLQTLPSSHDATQTLAPKTIHRQYSTPWRVGSYSGLV 955

Query: 749  --------NDINEPYILNPSTIDTKGKTNLESLLS------------DNQTFNRGLIIHK 788
                        +   L+        +  LE+  S              +  N G  +H 
Sbjct: 956  KNTSHGKAAPGADDEALSVLEQGVASRDQLETDNSLDPKPFGLNRFNFERGANAGSFMHL 1015

Query: 789  LLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM----------- 836
            +L++I            +     +      A+    L      +L+ P+           
Sbjct: 1016 VLELIDFTKAEFDLPEQLPKAMLQYG--IAAEWVDVLHAWYLDILKAPLALMPAEAEATT 1073

Query: 837  --------MTTAMSCDSYSEVSVSGKINCPKKDII---------------------ISGR 867
                    + T    D+  E+     +N  K   +                     + G 
Sbjct: 1074 PLINPKLCLATLSKQDTLVEMEFYLPLNALKDTQLNALLNQFGYRSTLKFDDLQGMLKGF 1133

Query: 868  IDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
            ID     +   +I +YK++H       +             +  Q  +Y   L  
Sbjct: 1134 IDLTFEYEGKFYIADYKSNHLGDDIYAYHQAALQGAIKEHHYDLQYILYSLALHR 1188


>gi|149197452|ref|ZP_01874503.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
 gi|149139470|gb|EDM27872.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
          Length = 674

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 105/590 (17%), Positives = 183/590 (31%), Gaps = 120/590 (20%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            + +S+         +  +Y+E      +LDF+DL++ T  LL+K +    +R  +  + 
Sbjct: 159 DLEESSDPWEQRIGGIYRYYQEYLHALNILDFDDLLMLTVRLLQKDE---KVRQLLQDKF 215

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            ++++DE QDT+ IQ E++ +L                +  VGD+ QSIYS+ GAE   +
Sbjct: 216 KYVMVDEFQDTNHIQMELLHALL---------PKHEPNICVVGDDDQSIYSWRGAEVANI 266

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L   +I             +I+L  ++RS   IL   +KV SI       +         
Sbjct: 267 LAFPQIFP--------GGKLIKLEQNYRSNNVILNAANKVISINSQRHVKN--------- 309

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                       LW         +                   S    A+ IA TI N +
Sbjct: 310 ------------LWSAQEGGEKLKVV--------------ACGSEEREAKAIADTILNKV 343

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                      R     D  +L R    +  +    R      +I           +   
Sbjct: 344 NG---------RQNTYGDCAILYRSNHQSRALEDAMR----RGRIPYKIIGDTSFYERKE 390

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY------EYIQ 471
           ++D +A  + I +  DD SF+ +L  P        I  +  +  E +T            
Sbjct: 391 VRDALAFLKIIHNPRDDFSFLRVLDVPPRGIGPRTIKTLREKAVENKTSVYDLLRNPQFM 450

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQF-----ISRFGNEV 525
           +               + E     Q                   +             + 
Sbjct: 451 ENFGRSSDALMKFNNRVEEFRQKFQEKVPLAGLVEQYFEGVGYIEGLGRMYKPREDAEKR 510

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAK 581
              + E ++     E+     +  L   LE      +         + N V ++TVH +K
Sbjct: 511 YQNVLEIIHTIEGREKEDKRCIP-LQEYLESVSLMEEYRRRQEKDEDPNAVMLLTVHASK 569

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE P VF+      +F H+    +                                   
Sbjct: 570 GLEFPSVFVTGMEKNLFPHEKSAGL----------------------------------- 594

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               E  RL YV +TRA   LI+         ++ +QR     + +   +
Sbjct: 595 KALAEERRLFYVALTRAKSDLILTWSKMRKAGRRMSQRMPSQFLGELPKD 644


>gi|70888451|gb|AAZ13818.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus]
          Length = 671

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 97/659 (14%), Positives = 217/659 (32%), Gaps = 123/659 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L++ L    +    +        + +       L  +   
Sbjct: 112 DQLALLKELTEKQLDGDKDLLRQLLSYISNWKNDMLTPEQAKALAQGEQQ--QLFAFCFE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI     LL+       +R +    I ++L+DE QDT+  Q+++
Sbjct: 170 MYQKQMKAYNALDFDDLISLPVQLLRNN---QEVRQRWQNRIRYLLVDEYQDTNTSQYDL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 227 VKLIVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDYPN--------V 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + ++       +           A R+         T  + ++      + KD
Sbjct: 308 -------DGEKLKVLLAKN-------EEHEAERV---------TGELIAHKFLNRTEYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSV----MQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +   +++
Sbjct: 401 AFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFEVSFEMGKDHQLSGRGLDNLRRFTQWM 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTL-----R 538
             +   A+     +    ++                +     +  + +  ++ +      
Sbjct: 461 VAIADQAERGDTVEAVRSLVRDIHYDDWLYETSASPKAAEMRMKNVSDLYSWIVAELEGD 520

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           N      +L+E++  L       +       + V++MT+H +KGL+ P V+L+ T   + 
Sbjct: 521 NNDQEEKTLKEVVQRLTLRDMMERGEEDEESDAVQLMTLHASKGLDFPYVYLIGTEEGIL 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL+YVG+TRA
Sbjct: 581 PHQTSID-----------------------------------EDNVEEDRRLMYVGITRA 605

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             +L            +  + T    + +   +D   ++ K   S  +          +
Sbjct: 606 QRELTFTMCKERRQYGELIKPTQSRFLDELPLDDVEWEENKKPVSQEESMAKGQAHIAN 664


>gi|169634040|ref|YP_001707776.1| ATP-dependent DNA helicase [Acinetobacter baumannii SDF]
 gi|169152832|emb|CAP01861.1| ATP-dependent DNA helicase [Acinetobacter baumannii]
          Length = 679

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 214/632 (33%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ I      +T +  +          +L   YE  
Sbjct: 127 RNNLSGAESKELIAKAMKKISDWKNDLILPEQAHSTCETPEDVQ-----FAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQEN---AEVRDKWQNRVRYLLVDEYQDTNTAQYILVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   K+              II+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLKQDFPN--------LHIIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  ++   +  ++D 
Sbjct: 281 EQNYRSTSRILKAANCVIQNNPHIFDKKLWSDK------------GHGEVIRIITCRNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A R+   + +++    +           KD  VL 
Sbjct: 329 D-----------------------EAERV---VKDLLTHKLMNGK------NWKDYAVLY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARVLETQLRQMQ----IPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHEL-I 492
           +  P        + K+    +    ++                  ++      +I     
Sbjct: 413 INMPKRAIGPVTLEKLGLFAQENNLSLLGASSDQRLSMVLPKKAETQLHEFADFISTFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFL----NFTLRNEQNS 543
            + +   P      ++           +           D ++       N   R E   
Sbjct: 473 ELLEDDEPVPKVRQMMNEAGYIDYIREQSATPAQEKSKLDNIENLFSSIQNLINRAEDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I +L       ++    + ++V ++T+H AKGLE P V+++    ++  HK+ 
Sbjct: 533 EKNIESVIRKLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPYVYIMGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IAAETIEEERRLMYVGITRARQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   ++   
Sbjct: 618 LTLAEQRKNGGQMKQMTPSRFLDELPQDELEW 649


>gi|119470385|ref|ZP_01613113.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Alteromonadales bacterium TW-7]
 gi|119446310|gb|EAW27586.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Alteromonadales bacterium TW-7]
          Length = 672

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 100/620 (16%), Positives = 198/620 (31%), Gaps = 120/620 (19%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                + ++  A   L   L A Y+   +    LDF+DLI+    LL     S   R + 
Sbjct: 148 LPEQAIREARDAQKALFAQLYARYQTQLRAYNALDFDDLIMIPTLLLTSNATS---RERW 204

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            Q   ++L+DE QDT+  Q+++++ L  +                VGD+ QSIYS+ GA 
Sbjct: 205 QQRFKYLLVDEYQDTNTSQYQLVKLLVGE----------RARFTVVGDDDQSIYSWRGAR 254

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
           P+ ++   +              +I+L  ++RS   IL   + + +   +       S  
Sbjct: 255 PQNLVLLSKDYP--------GLRLIKLEQNYRSAQRILKSANILIANNPHDIEKKLFS-- 304

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                                           +  +      +          R +A  I
Sbjct: 305 --------------------------------ELGYGEPIKVIACRDEEHESERVVAEII 332

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                     S+   +    KD  +L R                   +I    +      
Sbjct: 333 ----------SHKFMKRTSYKDYAILYRGNHQARGFEKSL----MSNRIPYKISGGMSFF 378

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK 472
               IKD+MA  R +++Q+DD +F+ ++ +P        + K+ T    + ++++     
Sbjct: 379 ARSEIKDIMAYLRLLVNQDDDNAFLRIVNTPRREIGTVTLEKLGTLANEKHQSLFATCFD 438

Query: 473 FANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRF 521
                  K           +++ EL   A      +    ++               ++ 
Sbjct: 439 NDLGYRLKGRGFNALAGFARWVVELSDNAVRSDTLEAVKDLVRNINYEAYLYESSPSAKA 498

Query: 522 GNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
               +  + E   +          N   +L E++S+L       +       + V+++T+
Sbjct: 499 AEMRMKNVSELYRWITDMLTGDADNEPMTLAEVVSKLTLRDMLERNEEEDESDAVQLLTL 558

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE P VF+V     +  H+                                    
Sbjct: 559 HASKGLEYPYVFMVGMEEGLLPHQVSID-------------------------------- 586

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              +   +E  RL YVG+TRA  +L +          ++++      V +   +D   + 
Sbjct: 587 ---EDNVDEERRLAYVGITRAQQELTLTYAKIRRQFGETSETELSRFVQELPQDDLAFEN 643

Query: 698 IKLTNSINKDEWIAYEWSTH 717
            K  +S  +          +
Sbjct: 644 KKAPSSQAERMEKGQARVAN 663


>gi|313682829|ref|YP_004060567.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313155689|gb|ADR34367.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 1102

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 131/933 (14%), Positives = 275/933 (29%), Gaps = 108/933 (11%)

Query: 11   ESYELIYKDLWPLPYF--QVSDINKYVSL--SMETGNPTILKKAQT-LQQASQTQCIEER 65
            +  E   +++W   +         K  S   ++ T +P+        L  A         
Sbjct: 220  DDKEFSLREIWMASHLSTYREHFEKGFSALGALATQDPSKSDYCDAILANAKTLLQGHGE 279

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            +      F   K   +         +    L++ LK+ +   I            K   A
Sbjct: 280  WFEYPGQFRKNKNIEEDTF------ESVKGLRDALKELKWTMIDPDAERYYVSTLKYVHA 333

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                   +   +  A ++    DFE ++   N LL+K    +           + ++DE 
Sbjct: 334  LFV---KVYERFRLALREKGYTDFETILEQANMLLEKDIALST---------RYFMVDEF 381

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT+  QW ++          K    +   +F VGDEKQSI++F GA+     +  R   
Sbjct: 382  QDTNSYQWGIV---------TKAAAKNNANIFIVGDEKQSIFAFQGADVSVFAKASRSIG 432

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG------------------L 287
                        + + ++ RS   I+ +V+ VF+     +                   +
Sbjct: 433  IE--------KPLSMEVNRRSDRSIIDLVNDVFAPAMAKKESIALEPINCIGEFRADDCI 484

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
            +  +T T + R     +     L         +          +  +   + + +    R
Sbjct: 485  ALFNTYTAQPRIFNDFEARYEPLLTPDTKGEGTIAILATPVDHTIAECEDECNESLQELR 544

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKD--ILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
             IA  I  +        +   +        I VL   RK    +      L    K+   
Sbjct: 545  HIASFIHEVTQGKHPQYSDVAQAYSEGKKAIAVLFDSRKHMLPLKQCLLELGLRAKV--- 601

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             +D     +   + D+  + + + S  D+L +  +     +  S               +
Sbjct: 602  -SDSGNFFETKEVNDIFIVLKLL-SIMDNLDWENLRGKEKYVIS-----------GALRS 648

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NE 524
                          + + + + +     ++ +   H     I+  +     +    G  +
Sbjct: 649  NILRCSADEIEYCLRVKRLPEILFRWKALSFYTPLHKLVQNIVEERALLHLYRHIDGYEQ 708

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ------YPPTIKRAHSANHNEVRIMTVH 578
                +++ ++          S+L+    ELE                      + I+T+H
Sbjct: 709  RAANIEQLIDMAHEYSTRMGSNLKGFSDELEAFIHNENVIEEEAFVIEEGVGSIEIVTMH 768

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+V +             + +      N +    I     +    +   + + 
Sbjct: 769  GSKGLEWPMVIIGAMNRSFLGMSKQETLVYDRFENKE---LIGFKIGEYEPLVYKFIKER 825

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
            + +    E  RL YV MTR    L++    N   +            Y +  N+      
Sbjct: 826  INQKHLAERKRLFYVAMTRPEHHLVLSTAINNYEKGPRLCYNCGSNNYFTLVNNVLGIDY 885

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            +     + D+            +        I+ +  +   P++              + 
Sbjct: 886  EELYERHIDQIKNISIYYPGEWSGNDATNAEIEVIPPKIVEPQQFSRF--------SFIC 937

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
            PS   T    +       +     G ++HK+L+      E +  N    Y  +     P 
Sbjct: 938  PS--GTVNPLSFLEEREFDAGTA-GSVVHKILEN--HWHELENDNIYERYFNEY--NVPE 990

Query: 819  KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ--Q 876
            +   N++      +++   T   +    +E          +    I G ID         
Sbjct: 991  EFKNNIIRMSKVFMKSRHFTKLKNG---AEAYFEHDFVMHQDGNQIRGSIDLFYYDDEAN 1047

Query: 877  NIFIFEYKTHHHVPQEIEHIP--YTHIAQLSIY 907
               I ++KT     +  E +     +  QL  Y
Sbjct: 1048 GWVIVDFKTTALNEKSPEDVIIENGYDKQLEFY 1080


>gi|163750873|ref|ZP_02158107.1| exodeoxyribonuclease V, beta subunit [Shewanella benthica KT99]
 gi|161329431|gb|EDQ00426.1| exodeoxyribonuclease V, beta subunit [Shewanella benthica KT99]
          Length = 1249

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 140/987 (14%), Positives = 304/987 (30%), Gaps = 150/987 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             K +WP     +  +   + L          KK     + +      + +   S      
Sbjct: 242  LKLIWPREREAIETLLHSLPL----NGVRFGKKPDAYPKLAIMLDAMDNWCKYSMSLPPM 297

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
            K     ++   ++NK      E     Q   +   +R                   ++  
Sbjct: 298  KVMESLSLGGLKLNKGG----EVPTPEQAPVLDHIERLCLLIKDFIPSFLYCARDGISKR 353

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + + K +  ++  +DL++     L+       +    +   I +     LIDE QDT  +
Sbjct: 354  FAQQKSERNLMTPDDLLLTLEQALRPDSTDVHEDKLSLANLIAKRFPVALIDEFQDTDPL 413

Query: 192  QWEVIRSLTEDFFVGKNTHSSPR-------------------TLFAVGDEKQSIYSFHGA 232
            Q+ +   + +         ++                     +L  +GD KQ+IY+F GA
Sbjct: 414  QFAIFNRIYQAELTSTADQNTDNSDNSDNTDNNQSKPTSKEVSLLMIGDPKQAIYAFRGA 473

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +    ++ +   +              L  ++RS+ +++  V+ +F   ++         
Sbjct: 474  DIHTYIQAREQTK----------QHYSLGTNYRSSRNMVLSVNALFENRDDPFINKAIVF 523

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             +++       +         +    D+     +         L + S+   LA   A  
Sbjct: 524  ESVQPSPFADKK-------IFIEQNGDTSALKIKLLSEDPDKGLNKASARKRLAEDAAAE 576

Query: 353  ISNMI-GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I+ ++  +     +   + ++A+DI VLVR R +      + R   +  +I  V   R  
Sbjct: 577  ITRLLTESQQGQCSISGKALKAQDIAVLVRDRNEAG----VMRESLSQRQIGSVFLSRDS 632

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + + L  ++L  +   + + +D+ +    L + L  ++   I          + + E   
Sbjct: 633  VFNTLEARELALVLHALATPKDERALRSALATSLLGYNAASIHGFNQDEMVRQDLLEQFD 692

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
               +  + +       +  L+ +A         + +L  + G ++            L E
Sbjct: 693  SLHHNWLRR-----GIMPALLSLANET---QLISRLLQGEDGERRLTD------FRHLAE 738

Query: 532  FLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLES 585
             L      +      +  L++  EQ           +   ++  N V+I+T+H +KGLE 
Sbjct: 739  LLQQ----KATELDGISALVNWYEQALIANNGNEEAQLRLASEQNLVQIVTIHKSKGLEY 794

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            PV F+              +    P L  D    IW  +            +  K+    
Sbjct: 795  PVCFIPFVSLA-----RDNRRKPAPMLYHDNNRLIWDIEQTDEG------WERHKRENLA 843

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD-----MVYDSFHNDERVKKIKL 700
            E  RLLYV +TR   Q  +   +++   KK+   +         +           +I+ 
Sbjct: 844  EDLRLLYVAITRPVYQCYLYIANHSRFTKKAGITSQLHETGIGYLLGIEDKACDFARIQT 903

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK------------ 748
                   + I+            LE+    K+ +  + + +KL++P +            
Sbjct: 904  QAQALICDAISVSEVQADVSTLALEKVTDEKRTLAPKTLKRKLYTPWRVGSYSGLVKDLP 963

Query: 749  ----NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKN 803
                    +        I         S  +  +  N G  +H +L++I   L E +   
Sbjct: 964  HERVAPGADDESFPELEIIQDVVDPSPSRFTFERGANAGSFMHLVLELIDFTLAEAQLPE 1023

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSVSGK-- 854
             + +   K         +  L      +L  P+       +          E+       
Sbjct: 1024 HLPAAMEKYG--IDESWFSILNAWYLDILAAPLTQDGSLTLAQLTPSQKLVEMEFYLPIN 1081

Query: 855  -------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---- 891
                               +N      ++ G ID     +   +I +YK++H        
Sbjct: 1082 QLKADELNELLERYGYSAGLNFESLKGMLKGFIDLTFEHKGQFYIADYKSNHLGDDFAHY 1141

Query: 892  -----EIEHIPYTHIAQLSIYEKILKD 913
                       + +  Q  IY   L  
Sbjct: 1142 GVDAMAGAIRSHRYDLQYIIYTLALHR 1168


>gi|118472301|ref|YP_886308.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118173588|gb|ABK74484.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 1087

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 149/1059 (14%), Positives = 300/1059 (28%), Gaps = 188/1059 (17%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            GL+           +     F  + +        E G    ++    L   S+T+  +  
Sbjct: 94   GLAPGSGASDESATVSTYHAFAGTLLR-------EHGLLLPVEPDTRL--LSETELWQLA 144

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK---------SQDEFIKIRDRFNT 116
            + ++ +             +T  + + S  L E L             +  +        
Sbjct: 145  YDVVCAHPGHLDTEKTPAAVTAMVLRLSGALAEHLVDTDQLRDTHVELERLVHTLPAGPY 204

Query: 117  YKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +    +   L +            L     +  +   V+DF    +      +      
Sbjct: 205  QRDRGPSQWLLRMLATQTERTELVPLIDALHQRMRAEKVMDFG---MQMAAAARLAARFP 261

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             +  ++ Q    +L+DE QDT   Q   + SL                L AVGD  QSIY
Sbjct: 262  QVGEQLRQRFRVVLLDEYQDTGHAQRIALSSLFG------GGADDGLALTAVGDPIQSIY 315

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             + GA    + R          + G     +EL  S+R+    L V + V          
Sbjct: 316  GWRGASATNLPRFTTDFP---YSDGTPAPTLELRTSWRNPPSTLHVANAVSEEARRR--- 369

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
               S      R     + GT++         +                            
Sbjct: 370  ---SVAVRALRPRPDAEPGTIRCALLNNVAAERD-------------------------- 400

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
             +A  ++        +     R   A    VLVR+  D   +            + V   
Sbjct: 401  WVADHLAR------AYHGAIGRGEAAPTAAVLVRRNADAAPMAEALTA----RGVPVEVV 450

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR------- 460
                L     + DL+A+ R I       + + +L  P + F   DI  +  +        
Sbjct: 451  GVAGLLAVPEVADLVAMLRLIADPTAGSAVMRILTGPRWRFGARDIAALWRRAVELDDRP 510

Query: 461  ----------------------HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
                                   +        ++++  G  +   + + +  L       
Sbjct: 511  KGELGTADIVAQAAPDADTACVADAICDPGDAERYSPAGYERIVALGRELTMLRAHLGH- 569

Query: 499  SPHDFFTLILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
               +    +        +  +      G    + LD F +       ++ +S+  L++ L
Sbjct: 570  PLPELVAEVRRVLGLDAEARAARPVAAGWAGTENLDRFSDLVSDFAGHAGASVSALLAYL 629

Query: 555  EQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +              + +H+ V+I+TVH AKGLE  VV +    ++VF      +  +  
Sbjct: 630  DAAVEVENGLAPAELTVSHDRVQILTVHAAKGLEWQVVAVPHLSARVFPSTTQARTWLTD 689

Query: 611  SLNDDPGIPIWIP----------------QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            + +  P +                       K  ++ +SD  K L +   +E  RLLYV 
Sbjct: 690  ASDLPPLLRGDRATESEIGVPVLDTSDIYDRKILSDKISDHKKSLDQRRVDEERRLLYVA 749

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRT------------------WYDMVYDSFHNDERVK 696
            +TRA D L++  H   + E K    +                      +     +    +
Sbjct: 750  ITRAEDTLLLSGHHWGATESKPRGPSEFLCELKTILEEATAAGTPCGEIEHWAPDPAPGE 809

Query: 697  KIKLTNSINKDEWIAYEWSTHH------------PENTPLEREETIKQLMDEQKIPKKLF 744
               L + + +  W     +  H                  E ++       +  + ++  
Sbjct: 810  TNPLRDQVVEALWPPVASADDHVHRGAQLVAAAMAGEVSAEADQEGWAADVDALLAERER 869

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFTL 796
             P + D   P  L+ ST+    +    +L    +            G   H+ +Q  F  
Sbjct: 870  PPQQEDTELPGQLSVSTLVELSRDPKAALTRLRRRLPQRPDPHALLGTTFHEWVQRYFH- 928

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
                       +   +       +    +      L++  + +  +    + V V    +
Sbjct: 929  -------AERLFDLDDLPGAVDSDSGRAVEESLAELQDAFVKSPWAA--RTPVEVEVPFD 979

Query: 857  CPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
                + ++ GRID +         + ++KT                 QL++Y        
Sbjct: 980  MVLGETVVRGRIDAVFAEPDGTTMVLDWKTGDPPETP--EAKEHAAVQLAVYRLAWAAMR 1037

Query: 916  --PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
              P +S+     YV   +  I       +   ++    P
Sbjct: 1038 GCPPESVRAAFHYVRSGQTVIPETLPGAEELVKLLAAAP 1076


>gi|86131067|ref|ZP_01049666.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
 gi|85818478|gb|EAQ39638.1| UvrD/REP helicase [Dokdonia donghaensis MED134]
          Length = 1045

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 124/872 (14%), Positives = 282/872 (32%), Gaps = 135/872 (15%)

Query: 83   NIITQEINKKSPDLKE----KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
               T+        + +    +      +   +  +   Y+ F+S L  L++   +    +
Sbjct: 287  AFYTKGQKDDIKSIIDANRNRFVDDFLKLKSLASQQKKYEAFRSKLIPLSVLHLIKKELD 346

Query: 139  EAKKKNCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
              K++  VL   DF  LI  +         +A++  ++ +   +  IDE QDTS++QW+ 
Sbjct: 347  LIKEEENVLLISDFNALISKSLK----DQPAAFLYERLGERYTNYFIDEFQDTSVMQWDN 402

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +  L ++     ++     +L  VGD KQ+IY + G E ++ +        +      + 
Sbjct: 403  LVPLIDNTISSASSDEVSNSLLLVGDPKQAIYRWRGGEAEQFIAL----SHQINPFTTEA 458

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
            ++  L  ++RS   I+   +  F+         L  +   T   + +   + G V L   
Sbjct: 459  TVARLDTNYRSNESIIHFNNSFFTHLAVHFDNELYSEIYKTDNAQGTTSKKNGYVSL--- 515

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                              + D      +  +   RI   I N+     +           
Sbjct: 516  -----------------EFIDYENNTEADLLYPERILEIIKNVTSQGYLH---------- 548

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             DI +L R  K    I  + +         VV ++  ++ +   ++ +      +   + 
Sbjct: 549  SDICILTRSNKHGTHIAQVLQE----AGTEVVSSESLLIENSPTVQFIHNFITMLSFPKQ 604

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL-- 491
                + +L                        + +    ++    S     ++ +     
Sbjct: 605  LEYRLAVL----------------YFLGAHYNIKDTHNFYSTHTASTLSEFLEQLKAFDV 648

Query: 492  ---IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
               +   +  S +++   ++ +                  +  +L+      Q     + 
Sbjct: 649  FIHLDYLKNLSLYEYIEYVIRSFY--------LAPISDAYVVAYLDLAYNYAQAHSGGVL 700

Query: 549  ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              I   E+          A  N V+IM++H +KGLE PVV      S ++  +   +   
Sbjct: 701  GFIDYWEEKREKASIVAPAQDNAVQIMSIHKSKGLEFPVVIYPYADSDLYRTRGEHQWFP 760

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSD---LIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
            M + + +    + +P + + N+       L +      Q +   +LYV +TRAS++L + 
Sbjct: 761  MENEDINGFNTLMVPHNNALNDFGEAGTALFEKRNNEQQFDTINVLYVALTRASERLYVL 820

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                 S +K                       + +    N + W   +        T   
Sbjct: 821  SRFRESVKK-----------------IGSYSDLFIDYLQNNNLWNNDQREYSFGSKTAAI 863

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
            ++    +  D Q     + S  K ++          I    + +             G +
Sbjct: 864  KKN---KTSDYQNFTPTIRSTAKEEL---------GIQIITQASFLWDEKKQNAITYGNL 911

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
            IH+L+  +     H     +     ++  + P +  K +   + +++ +P +      + 
Sbjct: 912  IHELMAAVTN---HNTITAVVDDAVRHG-IIPQESRKVMTGIMNQVVSHPDLKLFFEEE- 966

Query: 846  YSEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQL 904
             + V     I        I    D++ ++      I +YKT  H           +  QL
Sbjct: 967  -NTVYNERMILASDGRFYI---PDRVVVTPDGSTMIIDYKTGAHNDS--------YAKQL 1014

Query: 905  SIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935
            + Y  + ++      +   LL+Y+       +
Sbjct: 1015 ATYAGLYQEM--GYDVTHKLLVYIDS--TIEV 1042


>gi|127513058|ref|YP_001094255.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4]
 gi|126638353|gb|ABO23996.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4]
          Length = 1223

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 143/1014 (14%), Positives = 293/1014 (28%), Gaps = 138/1014 (13%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             + +WP       ++ K + L+            +     +       +   L    +  
Sbjct: 225  LRLIWPRERDATLELLKALPLNGTRFGKKDQGYPKLETLFAAMDNWAAQPLSLPDNKVLG 284

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
                    + +     +P         Q   +   +R                   + A 
Sbjct: 285  ALALGGLKLNKGGESPTP--------EQAPLLAHIERVTETIDTLVPSFLYGARDGIKAR 336

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWEV 195
            +   K+   +   +DL+I   D L +         + I +     LIDE QDT  +Q+++
Sbjct: 337  FAAQKQLKNLRTPDDLLIALADALSEETDQEQALARAIAKRFPIALIDEFQDTDPLQYQI 396

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
              S+ +   V  ++      L  +GD KQ+IY+F GA+    +  +          GQ  
Sbjct: 397  FSSIYQGQQVSTDSDLG---LLMIGDPKQAIYAFRGADIHTYIHAR----------GQTE 443

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +   L  ++RS+  ++  V+++FS  ++           ++       +         V 
Sbjct: 444  NHYSLDTNYRSSQAMIEAVNQLFSRSDDPFISQAIPFELVKASPEAAEK-------RLVE 496

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAK 374
                +     +         L + S+ S LA   A  I+ ++          + + ++AK
Sbjct: 497  KVPQTSALRLKLLGEDPNAGLNKASARSQLAEDAANEIARLLNEAQRGECLKQDKPLKAK 556

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            DI VLVR R +   I        +   I  V   R  + D L  K+L  +   I + +D+
Sbjct: 557  DIAVLVRDRNEAAYIKTAL----SSRGIGAVFLSRDSVFDTLVAKELALVLLAIANPKDE 612

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
             +    + + L  +    I          +   E         + +          +  +
Sbjct: 613  RALRSAMATALLGYDAQAIHGFNLDEDVRQQQLEAFDNLHQTWLKR--------GIMPCM 664

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                +       +L A +G+++            L E L           + L      L
Sbjct: 665  MALAADTRLIERLLTADEGQRRLTD------FRHLGELLQQKAMELDGISALLNWYQQTL 718

Query: 555  EQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
             +       +    +  N V+I+T+H +KGLE P+ FL              +    P L
Sbjct: 719  IEVSSTEEAQLRLESEQNLVQIVTIHKSKGLEYPICFLPFVSLA-----RDSRRKPAPML 773

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
              +    +W                  K     E  RLLYV +TR          +++  
Sbjct: 774  YHEQDALVWDIDQSEEG------WAKYKAENLAEDLRLLYVALTRPVLACYCYVANHSRF 827

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTN---------------SINKDEWIAYEWSTH 717
             K+    +        +         +  +                + + +    ++   
Sbjct: 828  TKRDGISSQLFETAIGYLLGIETNACEFADIQAAAQALASEAISVDLVESDAPKLDFDPI 887

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP------YILNPSTIDTKGKTNLE 771
               +        + +  +           +K+  +E           P        +   
Sbjct: 888  DTADAVKLAPRPLNRRHEIPWRVGSYSGLVKHSAHEQISPGMGDEAFPELEQLAPDSEQL 947

Query: 772  SLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
            S  S  +  N G  +H +L+ I   L +    + +     +      ++    L      
Sbjct: 948  SRFSFERGANAGSFLHWVLEQIDFTLADTSLGDELPKAMERFG--IDSEWQDMLHAWYLD 1005

Query: 831  LLENP------MMTTAMSCDSYSEVSVSGKINCPKKDII--------------------- 863
            LL  P       + +        E+     I       +                     
Sbjct: 1006 LLHTPLDGDGLRLASLSQAQKLVEMEFYMPIGKLDAPGLNQLLSQYGYSAALNFETLEGM 1065

Query: 864  ISGRIDQISISQQNIFIFEYKTHHH--------VPQEIEHIP-YTHIAQLSIYEKILKD- 913
            + G ID     Q   +I +YK++H          P  +  I  + +  Q  IY   L   
Sbjct: 1066 LKGFIDLTFEYQGKFYIADYKSNHLGDHLSHYEKPAMLRAIAGHHYDLQYIIYSLALHRY 1125

Query: 914  --------SYPNKSLVCLLIYVS--------EPKVFIIPQNKLNKAFAEISTKI 951
                     Y      C  +++             +  P   L +A   + ++ 
Sbjct: 1126 LKLRLPGYQYDQHVGGCYYLFLRGMSADSPSTGVYYDKPPLALIQALDTLLSEA 1179


>gi|254426856|ref|ZP_05040563.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881]
 gi|196193025|gb|EDX87984.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881]
          Length = 1198

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 123/901 (13%), Positives = 264/901 (29%), Gaps = 135/901 (14%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
             KF+ +   +T+   ++ PD          +   + D          T      A +++ 
Sbjct: 295  AKFSNEGMRLTKAGQEQRPDF-----AFCQQLDAVMD-GRANTQLPRTDLLAHAAAWIDR 348

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
              ++ +++   + F+D++   +D LK       +   I  +    LIDE QDT   Q+ +
Sbjct: 349  RVDQVRRQTATMGFDDMLSRLHDALKG-GNGERLAQVIRDQFPVALIDEFQDTDPTQYGI 407

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
              +L E               F +GD KQ+IY+F GA+    L+ +R           + 
Sbjct: 408  FCALYEG--------QEGTGWFMIGDPKQAIYAFRGADVFTYLKARRA---------TEG 450

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +   L  +FRS   ++  V+ +FS  +N  G        I   + +      V L     
Sbjct: 451  NHYTLDKNFRSADAMVHAVNHLFSYSQNTFGDVFMMDNAIPFEAVQANGRKDVLL----- 505

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK-----KRV 370
               +++ +            +         A R A  I++++        G       R 
Sbjct: 506  -VDNNEKSGITLWVDEQEKPVSAGQYRDEQAARCASEIAHLLNGAVKGVTGFQKTDSFRP 564

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +   DI +LVR R +   I      L      SV  +D+  +       DL+ +     +
Sbjct: 565  LHPNDIAILVRDRTEAKAIRD---ALMERQVRSVYLSDQDSVFAQPEAHDLLLILHACAT 621

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             E D      L   + + +  ++  +                       +++  ++  H 
Sbjct: 622  PESDTRVRSALACAVLDLAYAELDALNQD------------------EVRWEETVEQFHG 663

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLDEFLNFT---LRNEQNS 543
                 Q          +L       +       E        L E L      L  EQ+ 
Sbjct: 664  YRQQWQTQGVLPMLRSLLMDFHVPARLSQSLDGERALTNLLHLAELLQQAATQLDGEQSL 723

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               L++ + E             ++ + V+++T+H +KGLE P+V+L    S   + K+ 
Sbjct: 724  IRYLEDTVEEGRGSSKESILRLESDDDRVKVITIHKSKGLEYPLVYLPFICSFRPADKNK 783

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-- 661
              +    + +                     +          E  RLLYV +TRA     
Sbjct: 784  PPLRYHENDHL-----------NVSLEPDETVENKADHERLAEDMRLLYVALTRACHTCT 832

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            L I  +     ++   +++    +           +  LT   +    I     ++    
Sbjct: 833  LGIAPYIKGRGKQNQLEKSAIGRLLFGNGVANDGLRAALTPVAHDAVAIINAPDSNPECY 892

Query: 722  TPLEREETIKQLMDEQKIP--KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL----- 774
             P  +   ++  +            +           L P+          +        
Sbjct: 893  QPKAQARPLRTPLIPVARQRQPWWIASYSALKQVQETLAPADPRGDQLAEQQDDTVIDDA 952

Query: 775  --------SDNQTFNRGLIIHKLLQVIFTL-------PEHKRKNFITSYCTKNAKLWPAK 819
                    +  +    G ++H +L+               + +  +             +
Sbjct: 953  EPLPDTIHAFPRGAAPGTLLHDVLEQAANQSFTQTLADPAEFETSVEEKLQARGWQDFME 1012

Query: 820  EYKNLLLSI-------------TRLLEN--PMMTTAMSCDSY--SEVSVSGK-------- 854
              ++                     L    P +           +E+    +        
Sbjct: 1013 VIRHWWKQAVTTSLPLENDRIALNTLHTYVPELEFLFPAHQVKVAEMDTLIRQHIHPQHP 1072

Query: 855  ---INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE---------IEHIPYTHIA 902
               +     + ++ G ID +       ++ +YK++     +            +   +  
Sbjct: 1073 RPRLEADTLNGMLKGFIDLVFEHDGKYYVLDYKSNWLGVDDSAYTLDAMTDAVLEKRYEV 1132

Query: 903  Q 903
            Q
Sbjct: 1133 Q 1133


>gi|90408773|ref|ZP_01216918.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3]
 gi|90310117|gb|EAS38257.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3]
          Length = 722

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 102/581 (17%), Positives = 187/581 (32%), Gaps = 120/581 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YEEA + + ++DF +L++ T++LL        +     Q   H+L+DE QDT+ +
Sbjct: 172 QVYKAYEEACQLSGLVDFSELLLRTHELLLTHPA---LLQHYQQRFKHVLVDEFQDTNKL 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +  LT+          +   L  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWLTLLTD----------ADNFLTIVGDDDQSIYGWRGADIENIQRFLKE-------- 270

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +    I L  ++RST  IL   +++     +  G                      +LW
Sbjct: 271 KENPITIRLEQNYRSTGHILNASNQLIKNNSDRLGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   S  +    +  + F+   +        R +   I             ++   
Sbjct: 310 -------TSGEDGDPIAIYNAFNEYDET-------RYVIAQIQKW----------ERESN 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D  +L R    + L            +I           D L +KD +A  R + + 
Sbjct: 346 KLCDCAILYRSNAQSRLFEEQLMA----NQIPYHIYGGQRFFDRLEVKDSIAYLRLMNNH 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------SKFQHV 484
            DD +F  ++  P        + KI    R +  T++                    +  
Sbjct: 402 NDDAAFERIVNKPKRKIGNTTLDKIRLCAREQGYTLWHASCYLIEAKQLSAGAMRSLEAF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRN-- 539
           I  +                  I+     ++ F +  G      I+ L+E ++ +     
Sbjct: 462 IDLVSRFKGETSELPLFQLMDHIINHSGLKEMFANEKGEKSRSRIENLEELVSASKSFTM 521

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E+     L   ++                 + V++MT+H+AKGLE   VF+V     +
Sbjct: 522 PEEEQEMDELTAFLAYAALESGD--NQADEFTDAVQLMTMHSAKGLEFSQVFMVGVEEGM 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F  +                                        S   E  RL YVGMTR
Sbjct: 580 FPGQ----------------------------------RSIEDPSRLAEERRLCYVGMTR 605

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           A  +L IC   +     +         + +    D    ++
Sbjct: 606 AKQKLTICHADSRRLYGQEKFHKPSRFIAELPDEDIAFIRM 646


>gi|28899148|ref|NP_798753.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus RIMD
            2210633]
 gi|260364728|ref|ZP_05777315.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus K5030]
 gi|260876768|ref|ZP_05889123.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
            AN-5034]
 gi|260898155|ref|ZP_05906651.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
            Peru-466]
 gi|28807372|dbj|BAC60637.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus RIMD
            2210633]
 gi|308089095|gb|EFO38790.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
            Peru-466]
 gi|308091467|gb|EFO41162.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus
            AN-5034]
 gi|308115342|gb|EFO52882.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus K5030]
          Length = 1227

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 157/1021 (15%), Positives = 310/1021 (30%), Gaps = 167/1021 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMET-------GNPTIL-----KKAQTLQQASQT 59
            +     + LW  P   +SDI+ Y++ +  +       G+   L     KK   L+ A   
Sbjct: 196  TLAGEIRQLWSSPSALLSDISNYLTGAPLSLSVPAMKGSLADLHTENLKKIDELK-AQWR 254

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------ 105
            +  ++ F+L+S   + ++   +K++ T                D  +KL+K         
Sbjct: 255  ESQDDFFTLISDSDINKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEK 314

Query: 106  ---------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                        +  + F    +           ++       AK +   L F+DL+   
Sbjct: 315  TPKGSAPQHAVFEAIETFLANPISLKAPLLAHAIEHCRVMLANAKNQKQWLSFDDLLTQ- 373

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                   D S  +  +I       +IDE QDT  +Q+ +   +          +     L
Sbjct: 374  LSASIDTDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIY--------LNDPECGL 425

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++
Sbjct: 426  FMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVQAVNQ 475

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS- 335
            VF++P++      D    I     +       ++W         Q  P    W    D  
Sbjct: 476  VFALPDSPFIYDSD----IPFLPVKYSPNAEKRIWTM-----GGQKQPALTYWLQEADDK 526

Query: 336  -LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
             LP+    + +A   A  I  ++     G   + +  K++ +QA DI VLVR   +  ++
Sbjct: 527  PLPKGEYLTRMAEATASQIQTILTQAQQGQACLVNGEKQKAVQAGDIAVLVRTGSEGRMV 586

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                + L +    SV  ++R  +      +DL  L + +L+ E+D +    L S LF   
Sbjct: 587  K---QALADQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALD 643

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               +  +           E + + A     +++ +      L  +    S       +L 
Sbjct: 644  AASLDALNND--------EVVWENAVNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLE 695

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKR 563
                 Q          +  + E L        + +  L+ L   +              +
Sbjct: 696  EGASSQGENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAENGLGGSDDQIQ 755

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               +  N V+I+T+H +KGLE  +VFL                      ++         
Sbjct: 756  RLESERNLVQIVTIHKSKGLEYDLVFLPFV-------------FSYREASEAKYYDAAND 802

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWY 682
            ++          +K   K    E  RL+YV +TRA     I           K       
Sbjct: 803  RTVLDITGNDASMKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGVHR 862

Query: 683  DMVYDSFHNDERVKKIKL-------TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
              +     N +      L        + ++                 P E    +     
Sbjct: 863  SAIGYLIQNGQEGGINDLHQGLTKQQDELDCVVVADPPQQLEDKYVAPQEEIHDLSAKEL 922

Query: 736  EQKIPKKLF----------SPIKNDINEPYIL-------NPSTIDTKGKTNLESLLSDNQ 778
            +  I +                  + +    +       +    +        S+ +  +
Sbjct: 923  QNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEADLVEPERSIFTFPR 982

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPM- 836
                G  +H L + I        +           ++    +    L   I  +L  P+ 
Sbjct: 983  GARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDTVLVTPLD 1042

Query: 837  -----MTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISG 866
                 +          E+     I       +                         + G
Sbjct: 1043 GKSLLLNQKAPSQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGMLKG 1102

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKDSYPN 917
             ID +   Q   ++ ++K++H          E +      + +  Q  IY   L     +
Sbjct: 1103 FIDLVFEHQGKYYVLDWKSNHLGDDVTHYHGEALKSAMADHRYDLQYQIYALALHRFLRS 1162

Query: 918  K 918
            +
Sbjct: 1163 R 1163


>gi|120598716|ref|YP_963290.1| exodeoxyribonuclease V subunit beta [Shewanella sp. W3-18-1]
 gi|120558809|gb|ABM24736.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. W3-18-1]
          Length = 1256

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 293/955 (30%), Gaps = 145/955 (15%)

Query: 63   EERFSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDE-FIKIRDRFNTYKMF 120
               F  L ++       P  K +    +++   +    L    +   +   ++       
Sbjct: 280  AAMFDALDNWLAYGNGLPPIKVLEDLSLSELKLNKGGVLPSVSEAPLLDHMEQLAALIKA 339

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                   +  + ++A + + K++  VL  +DL+    + L        +   +       
Sbjct: 340  VKPAFLYSAKQGISARFAKQKQQQNVLTPDDLLTTLAEALNAN--RQTLPKAVASRFPVA 397

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFV-------GKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            LIDE QDT  +Q+ +  S+ +             N   +  +L  +GD KQ+IY+F GA+
Sbjct: 398  LIDEFQDTDPLQFAIFSSIYQPHHAFNLPTDNHLNHAENNLSLLMIGDPKQAIYAFRGAD 457

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                +  ++  +              L  ++RS+ +++  V+ +F+   +          
Sbjct: 458  IYTYIEARKATEAHY----------HLDTNYRSSTNMVAGVNHLFNRHPDPFISQSIPFD 507

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
            +++  SS           + +    ++    +    +   + L + ++   LA   A  I
Sbjct: 508  SVKTPSSAK--------HKILTEPSENPAALRVRLLSETENGLNKTTARHRLANDAAAEI 559

Query: 354  SNMIGTDTIFSNGKKR-VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            + ++ +         +  + AKDI +LVR R +      + +   +  +I  V   R  +
Sbjct: 560  TRLLTSAAHGECYTPKGPLMAKDIAILVRDRNEAA----VMKAALSQRQIGAVFLSRDSV 615

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
             D L  +++  + R + + +D+ +    L + L  ++ + I        + + + E    
Sbjct: 616  FDTLEAREMSLILRSLANPKDERALRSALATALLGYNAEQIHAFNQNEEQRQQLLEQFFD 675

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI----LGAKKGRQQFISRFGNEVIDV 528
                   +       +  L+ +A   S  +         L   + ++             
Sbjct: 676  LHTIWQKR-----GIMPALLSLANSTSLIERLLHAPQPKLDNNQEQETTYGERRLTDFRH 730

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKG 582
            L E L      +      +  L++  EQ           +    +  N V+I+T+H +KG
Sbjct: 731  LAELLQQ----KATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKG 786

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PV F+        + +    M             +W  +            +  ++ 
Sbjct: 787  LEYPVCFVPFVSLARDNRRRPTPMLYHKINQTHGQALVWDIEGTEEG------WEQFRQE 840

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSN----TSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
            T  E  RLLYV +TR      +   ++     +  K     T    +      D    +I
Sbjct: 841  TLAEDLRLLYVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGITDADCDFNRI 900

Query: 699  KLTNSINKDEWIAYEWSTHHPEN--TPLEREETIKQLMDEQKIPKKLFSPIK-------- 748
                        A        E     L       Q +  + I ++  +P +        
Sbjct: 901  SQAAQNLAQRIDAISIDKIPEETSLQTLPSSHDATQTLAPKTIHRQYSTPWRVGSYSGLV 960

Query: 749  --------NDINEPYILNPSTIDTKGKTNLESLLS------------DNQTFNRGLIIHK 788
                        +   L+        +  LE+  S              +  N G  +H 
Sbjct: 961  KNTSHGKAAPGADDEALSVLEQGVASRDQLETDNSLDPKPFGLNRFNFERGANAGSFMHL 1020

Query: 789  LLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM----------- 836
            +L++I            +     +      A+    L      +L+ P+           
Sbjct: 1021 VLELIDFTKAEFDLPEQLPKAMLQYG--IAAEWVDVLHAWYLDILKAPLALMPAEAEATT 1078

Query: 837  --------MTTAMSCDSYSEVSVSGKINCPKKDII---------------------ISGR 867
                    + T    D+  E+     +N  K   +                     + G 
Sbjct: 1079 PLINPKLCLATLSKQDTLVEMEFYLPLNALKDTQLNALLNQFGYRSTLKFDDLQGMLKGF 1138

Query: 868  IDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
            ID     +   +I +YK++H       +             +  Q  +Y   L  
Sbjct: 1139 IDLTFEYEGKFYIADYKSNHLGDDIYAYHQAALQGAIKEHHYDLQYILYSLALHR 1193


>gi|323342977|ref|ZP_08083208.1| ATP-dependent DNA helicase PcrA [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322463041|gb|EFY08236.1| ATP-dependent DNA helicase PcrA [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 715

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 100/536 (18%), Positives = 183/536 (34%), Gaps = 109/536 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y     +   LDF+DL++  N L K+      +R K  +  + +L+DE QD   +Q
Sbjct: 171 LYRFYVNRLHELFALDFDDLLLEVNRLFKEN---LEVRDKWRRRFDVVLVDEFQDVDHVQ 227

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + ++ +L  D             L+ VGD  Q+IY++ GA    ++   +   +      
Sbjct: 228 YGIVDALVGD----------ENQLYVVGDPDQTIYTWRGANVDFIIDFDKKYPES----- 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL   + +    ++    +  +                     
Sbjct: 273 ---ETITLNQNYRSTQHILDSANTLIKNNKDRPDKALYA--------------------- 308

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  ++ +     + +  D   +       A  +A  +  +                
Sbjct: 309 -------NKESEFPVQYATLDDGDAE-------AYWVANRMLELHDEGH----------S 344

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D+ VL R    +  +  +        +I  V        D   IKD+M+  R I    
Sbjct: 345 YLDMAVLYRSNYLSRALEKVLMA----RRIPYVIYGGLRFYDQAEIKDMMSYLRMITH-G 399

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI--SKFQHVIKYIH 489
           DDL+    +  P     E  +  I    R    T+YE +    +      K ++ +  I 
Sbjct: 400 DDLALRRSIAMPRRGIGEKTLDTIMLQAREREMTMYESMLYDVHHQQATPKIRNYVMMIE 459

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           +   +AQ  S       +L     R+ F      E ++ L E +   L  ++N  +    
Sbjct: 460 DFREMAQEASIETIMQYVLKRSGLREHFEKIQELERVESLKELIGDALTFQENYEN--PS 517

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L   ++       ++       VR+MTVH AKGLE   VF++     +F +K+  +    
Sbjct: 518 LDEYIQMVSLYGDKSEVVEGEYVRLMTVHAAKGLEFENVFIMGLADNIFPNKNSIQEGSG 577

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              +E  RL+YV +TRA ++L + 
Sbjct: 578 G---------------------------------IQEERRLMYVAITRAKERLFLS 600


>gi|209542394|ref|YP_002274623.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530071|gb|ACI50008.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 760

 Score =  260 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 100/551 (18%), Positives = 169/551 (30%), Gaps = 115/551 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + + A Y+    +    DF DL+++  ++L+       +  +  +   +IL+DE QDT+ 
Sbjct: 203 RPIYAAYQARLVQLNACDFGDLMLHVTEILRT---RPDVLAQYHRLFRYILVDEYQDTNT 259

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L +           P  +  VGD+ QSIYS+ GAE + +LR +R        
Sbjct: 260 IQYLWLRLLAQ-------REGQPANICCVGDDDQSIYSWRGAEVENILRFERDFP----- 307

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +++ L  ++RSTA IL     + +  +   G +         R  R    G    
Sbjct: 308 ---GAAVVRLERNYRSTAQILGAASGLIAHNDGRLGKT--------LRPGREDASGEKVR 356

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              V    D                          AR +   +  +              
Sbjct: 357 VASVWDSDD-------------------------EARLVGEEVERLRAGGHSL------- 384

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +I +LVR    T         L     +           +   I+D MA  R +  
Sbjct: 385 ---AEIAILVRAGFQTRAFEERLITL----GLPYRVVGGLRFYERSEIRDAMAYMRVLNQ 437

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISKFQH 483
             DDL+F  ++  P        + K      E +                      +   
Sbjct: 438 PADDLAFERIINVPRRGIGAAAMQKFHVAAREGQMPLAAAVMDLIARGALKGRAREQMTA 497

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
           ++  +                  +L        + +    E    +D L E +      E
Sbjct: 498 LMACLARGREALPREGHVVVVETLLEESGYIDMWKADTSPEAPGRLDNLKELVRALADFE 557

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                        LE     ++   +A    + IMT+H AKGLE   VFL      VF  
Sbjct: 558 SLGG--------FLEHVALVMENEENAGAERLSIMTLHGAKGLEFDTVFLPGWEEGVFPS 609

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +       +                                   EE  RL YVG+TRA  
Sbjct: 610 QRTLDEGGL--------------------------------KGLEEERRLAYVGITRARH 637

Query: 661 QLIICKHSNTS 671
           + +I   ++  
Sbjct: 638 RAVISHAASRR 648


>gi|261252168|ref|ZP_05944741.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891]
 gi|260935559|gb|EEX91548.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891]
          Length = 1205

 Score =  260 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 153/1021 (14%), Positives = 318/1021 (31%), Gaps = 176/1021 (17%)

Query: 13   YELIYKDLWPLPYFQVSDINKYV-------SLSMETGNPTIL-----KKAQTLQQASQTQ 60
                 + +W  P   +SD++ Y+       S++  +G+   L      K   L+   +  
Sbjct: 182  LAGEVRRIWNAPANLLSDVSSYLTGAPLSLSVAAMSGSLADLHQQNLAKIDELKALWREH 241

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------- 105
              ++  +L+S   + ++   +K++ T              S D  +KL+K          
Sbjct: 242  Q-DDFLALISDSDVNKRSYTKKSLPTWLEAVSLWAATETTSYDYPDKLEKFAQNVLVEKT 300

Query: 106  --------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
                    +     + F    +           ++      +AK++   + F+DL+ N +
Sbjct: 301  PKGNPPQHQVFNAIEDFLAAPISLKAPILAHAIEHCRDMLAKAKQQKQWMSFDDLLTNLS 360

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
              +  +D +  +  +I Q     +IDE QDT  +Q+ +   +          ++    LF
Sbjct: 361  AAI-DQDEAELLASRIRQLYPVAMIDEFQDTDPLQYSIFSRIY--------LNNPECGLF 411

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++V
Sbjct: 412  MIGDPKQAIYGFRGADIFTYIKARNQVSSHFT----------LGTNWRSSADMVAAVNQV 461

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW--TSYFDS 335
            F++P +     +D    I             ++W         Q  P    W   +    
Sbjct: 462  FALPSSPFIYDQD----IPFHPVNHSPNAEKRIWTI-----GGQKQPALTYWLQDAEDKP 512

Query: 336  LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
            LP+      +A+  A  I  ++               K  IQA DI VLVR   +  ++ 
Sbjct: 513  LPKGEYLQAMAKATADQIQAVLTSAQQDLAFFEDGKGKHQIQAGDIAVLVRTGNEGRMVK 572

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                 L      SV  ++R  +   +  +DL  L + +L+ E+D +    L S +F    
Sbjct: 573  D---ALAKQGIASVYLSNRDSVFTSMIAQDLQRLLQAVLTPENDRALRASLASEMFALDA 629

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
              + K+    +E E+     +++      +       +  L  +       +      G 
Sbjct: 630  GALDKLNNDENEWESAINEFKEYRKLWTQR-----GVLPMLRAVMSKRHIAERLLEEEGG 684

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRA 564
            ++     +          + E L    +   + +  L+ L   +              + 
Sbjct: 685  ERTLTDLM---------HIGELLQQASQELDSDHGLLRWLAQAISDAENGLGGSEDQIQR 735

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              +  N V+I+T+H +KGLE  +VFL                      ++         +
Sbjct: 736  LESERNLVQIVTIHKSKGLEYDLVFLPFV-------------LSYREASEAKYYDAAQDR 782

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYD 683
            +          +    K    E  RL+YV +TRA     I           K      + 
Sbjct: 783  TILDITKQDASLAQADKERLAEDLRLIYVALTRAVYGCFIGAAPLRNGRSTKEPTGVHHS 842

Query: 684  MVYDSFHNDERVKKIKLTNSINK--DEWIAYEWSTHHPENTPL------EREETIKQLMD 735
             +     + +      LT +I K  D   A +  +  PE   +      E +    + + 
Sbjct: 843  AMGYLLQDGKEGGISDLTMAIQKHVDGLDAVQLCSLPPEQQQVFTQITGEPQTLTARTLS 902

Query: 736  EQKIPKKLFS---------------PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             +       +                  + ++     +    + +     +S+ +  +  
Sbjct: 903  NEIDRHWRITSYSGLIKQGSHHSDEAYTDLMHLDIDSSDEQDEEELVEPEQSIFTFPRGA 962

Query: 781  NRGLIIHKLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-M 836
              G  +H L + +         +  + I                  L   I  +L  P  
Sbjct: 963  RPGTFLHTLFEEVEFTQSASSEENTDIIIRLLESE--QLDQSWLPVLQQLIDTVLATPLD 1020

Query: 837  MTTAM-----SCDSYSEVSVSGKINCPKKDII-------------------------ISG 866
                +           E+     I       +                         + G
Sbjct: 1021 GKQLILNQKGPSQRLVEMEFLLPIEVLAAPALNRVIQRHDTLSAKAGDLGFHTVQGMLKG 1080

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPN 917
             ID +   Q   ++ ++K++H                   + +  Q  IY   L     +
Sbjct: 1081 FIDLVFEHQGKYYVLDWKSNHLGDDVSYYHGQALNGAMADHRYDLQYQIYALALHRFLRS 1140

Query: 918  K 918
            +
Sbjct: 1141 R 1141


>gi|118618002|ref|YP_906334.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
 gi|118570112|gb|ABL04863.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
          Length = 1101

 Score =  260 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 148/1073 (13%), Positives = 308/1073 (28%), Gaps = 186/1073 (17%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +++R       +  +   +    P   VS  + +    +      +L      +  S+T+
Sbjct: 83   VRSRLARLAGTTVGVAVGEAAGAP--TVSTYHAFAGSLLRDHGL-LLPIEPDTRLLSETE 139

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK---------SQDEFIKIR 111
              +  F +++ +            +T  + +    L E L             +  +   
Sbjct: 140  LWQLAFEVVNGYRGELCTQKTPAAVTATVLRLWGQLAEHLVDTRQLRDTHIELERLVHAL 199

Query: 112  DRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                  +        L +            L     E  +   V+DF    +      + 
Sbjct: 200  PAGPNQRDSGPNQWLLRMLVTQTERAELVPLLDALHERMRAAKVMDFG---MQMAAAARL 256

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                  +  ++      +L+DE QDT   Q   + +L                L AVGD 
Sbjct: 257  AATCPQVGGELRSRYRVVLLDEYQDTGHSQRIALSALFG------GGVDDGLALTAVGDP 310

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
             QSIY + GA    + R        A + G    ++EL  S+R+    L + + + + P 
Sbjct: 311  IQSIYGWRGASATNLPRFSTDF---ALSDGAPAPVLELRTSWRNPPRALHLANAISAEPR 367

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                    +   +R R           L   V ++ D                       
Sbjct: 368  RRS----VAVHALRSRPDAPAGTVRCALLADVQAERD----------------------- 400

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                      I++ +      +      +      VLVR+  D   I            I
Sbjct: 401  ---------WIADQLQGHYQRAAAD--GVSPPTAAVLVRRNADAAPIADALVA----RGI 445

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-- 460
             V       L     + DL+A+ R +       + + +L  P +     D+  +  +   
Sbjct: 446  PVEVVGLAGLLSIPEVADLVAMLRLVGDPTAGAAAMRVLTGPRWRLGGSDVAALWRRAVA 505

Query: 461  -----------------------HETETVYEYIQK------FANCGISKFQHVIKYIHEL 491
                                    +T  + + I        +++ G  +   +   ++ L
Sbjct: 506  LVGGPQVGASVSPGAVAAAAGPDTDTACLADAICDPGPADWYSSAGYERIGALAAELNAL 565

Query: 492  IHIAQFCSPHDFFT--LILGAK-KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY---- 544
                    P        +LG     R    +       + LD F +      + +     
Sbjct: 566  RGHLGHWLPDLVAEVRRVLGLDCDVRAAATASGAWAGAEHLDAFADVVADYAERTAISAG 625

Query: 545  ------SSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                  +S+  L++ L+              +   + V+++TVH AKGLE  VV +    
Sbjct: 626  SALSTKASVDGLLAYLDVAAEVENGLPPAQLTVARDGVQVLTVHAAKGLEWQVVAVAHLS 685

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIP----------------QSKSRNNIVSDLIKH 638
            + VF     +   +       P +                       K  ++ +S   + 
Sbjct: 686  AGVFPSTASRSSWLTDPGELPPLLRGDRASVGALGIPVLDTSAVTNRKQLSDTISAHREQ 745

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-------------V 685
            L +   +E  RLLYVG+TRA D +++  H   +   K    + +                
Sbjct: 746  LDQRRVDEERRLLYVGVTRAEDTVLVSGHHWGATGLKPRGPSDFLCELKDIIERSAAAGD 805

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                 +      +    +   D+ +   W T        + E   + + +       + +
Sbjct: 806  PCGTVDQWDRAPVAGERNPLLDDVVEAVWPTDPLATRRGDVERGARLVAEAISADAGVEA 865

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF------------------NRGLIIH 787
            P             + +D        ++    +                     R  ++H
Sbjct: 866  PAGGAAVADIEGWTADVDALLAERARAVGPPTRALPNQLSVSGLVELARDPVGARQRLVH 925

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT----RLLENPMMTTAMSC 843
            +L       P  +  N   ++  +        +  +L  +      ++ +   +  A + 
Sbjct: 926  RLPTR--PDPHAQLGNIFHTWVQQFYGAELLFDLGDLPGAADSDVGQVEDLAPLQEAFAG 983

Query: 844  D---SYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYT 899
                + + ++V      P  D ++ GRID +         + ++KT    P+  E +   
Sbjct: 984  SPWAARTPIAVEVPFEMPVGDTVVRGRIDAVFEDPDGGATVVDWKTG-EPPRGPEAMRQA 1042

Query: 900  HIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNK-AFAEIST 949
               QL++Y          P  S+     YV       IP    +  A AE+  
Sbjct: 1043 -AVQLAVYRMAWAALRGCPESSVRTAFHYVRTGVTV-IPDELPDGMALAELLA 1093


>gi|256831952|ref|YP_003160679.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
 gi|256685483|gb|ACV08376.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
          Length = 1103

 Score =  260 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 139/1006 (13%), Positives = 275/1006 (27%), Gaps = 187/1006 (18%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
              +    +    +   S ++   +T       +++T  + + +  L   L+   D  +  
Sbjct: 165  DIVDHWQEDLDTDYAVSTMTDAVVTLAGELADHLLT--VPEAATQLDHLLESLADLPLAG 222

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            R    +       LA+      L + Y   K+ +  +DF D ++   +L +      ++ 
Sbjct: 223  RSLAPSVAKLGKQLATKRRLLDLVSEYHRVKRHSESMDFSDQVVLAAELARDHP---FVA 279

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                +    +L+DE QDTS  Q +++ +L  D             + AVGD  QSIY + 
Sbjct: 280  DTERRRFAVVLLDEYQDTSYAQIQLLTALFGD----------GHPVTAVGDPNQSIYGWR 329

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA    + R  R   +     G   SI  L  S+R+ A IL+   ++      A  L+  
Sbjct: 330  GASASGLTRFPRDFPR---PNGTPASIASLSTSWRNDAQILSAAHRI------ALPLASA 380

Query: 291  STTTIRHRSSRIGQV-GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S   +   S+R G   G+V +   + +Q +                              
Sbjct: 381  SALPLPTLSTRPGAGTGSVTVGYYLSAQDE------------------------------ 410

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                             +  V       VL R RK  PL+    R    +  + V     
Sbjct: 411  --------AQGIADFFTRHFVPGMTTAAVLCRARKQFPLLEETLR----NAGLPVEVVGL 458

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------- 462
              L     I+DL+++   +       S + +L  P F+    DI  +     E       
Sbjct: 459  GGLLHTPEIRDLVSMLEVVHDPSRGDSLMRLLTGPRFHLGAHDIHTLGVWARELSSRAHG 518

Query: 463  ---------------------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                                             + + F+  G  +   +   I  L    
Sbjct: 519  YSGPPRGALREAADERSIVDALAQLPPRSWQGHHGETFSEAGYERLTQLSALIDALRQQT 578

Query: 496  QFCSPH--DFFTLILGAKKGRQQFISRFGNE----------VIDVLDEFLNFTLRN-EQN 542
                P   D     LG         +    E              LD F +       Q 
Sbjct: 579  YLALPEFVDATERALGLDVEVALRAAHRHAETGTTDPSDPWGRAHLDAFRSVVTDFVHQA 638

Query: 543  SYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             + +L  L++ L+      +         + + + ++TVH AKGLE  +V +      VF
Sbjct: 639  VHPTLGALLAWLDDARDRERGLDRPTGHLDPHAIHLITVHAAKGLEWDLVAVPALSDGVF 698

Query: 599  S------------HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK------ 640
                               +  +P         +        ++      +  +      
Sbjct: 699  PSTATTTPRGPTDSGWTSHLGALPFSLRGDAPDLPHLSLADADHDAEIARRLTEFTAQCG 758

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
                 E  RL YV  TRA   L++      + +  +    +   + D           + 
Sbjct: 759  HYQVAEERRLAYVAYTRARTALLVTGAWWRTGKTATPPSPFLTELLDIDGVQIADLVTEP 818

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQL--------------------------- 733
             +                  +   +R   +                              
Sbjct: 819  GDDNPHPPDGDTAVWPQSLVDDITKRAADLVMSTRHNGRPILDHIGPVQVHGVDLAQRAR 878

Query: 734  ----MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                + ++     +  P    ++    L+        +         +    RG   H  
Sbjct: 879  QVLNVQQRPRGSSVIFPDHVSVSGLVELSADREGFLTQYQRPIPRQPSPQSRRGTTFHLW 938

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
            ++  +        + +      N            L  +    E             +  
Sbjct: 939  VEQFYGHTPLFDMDDLD-----NTSDSDDHGTDRTLDELKATFEQSRWARL------TPK 987

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQN---IFIFEYKTHHHVPQEIEHIPYTHI-AQLS 905
             +   I+     ++I  RID +         + + ++KT      + +     H   QL+
Sbjct: 988  ELEADIDVVIAGVVIRARIDAVFDDPDRPGGVIVVDWKTGRAPTTDADQ---RHRNVQLA 1044

Query: 906  IYEKILKDSYPNK--SLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
            +Y              +     YV++    I  Q    +    +  
Sbjct: 1045 VYRLAWATWSGCDINDVTAAFYYVAQDLTVIPDQLPEREELERLVR 1090


>gi|145225243|ref|YP_001135921.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
 gi|145217729|gb|ABP47133.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
          Length = 1091

 Score =  260 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 143/1063 (13%), Positives = 294/1063 (27%), Gaps = 192/1063 (18%)

Query: 1    LKNRFG--LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
            +++R         +      DL   P    +      +L  E G    ++    L    +
Sbjct: 84   VRSRLARLAGAGLTIPAAGADLADDPVTIGTYHAFAGTLLREFGLMLPVEPDTRL--LGE 141

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK---------SQDEFIK 109
            T+  +  F ++               IT  + + +  L E L             D  + 
Sbjct: 142  TELWQLAFRVVCEHPAALDTDKSPASITAMVLRLAGQLSEHLVDTEQLRDTHVELDRLVH 201

Query: 110  IRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
                    +    +   L +            L        ++  V+DF   + +   L 
Sbjct: 202  TLPAGRYQRDRGPSQWLLRMLATQTERTMLVPLIDALHRRMREERVMDFGMQMASAARLA 261

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                    +  ++ Q    +L+DE QDT   Q   + SL                L AVG
Sbjct: 262  STHPA---VGEQLRQRYRVVLLDEYQDTGHAQRVALSSLFG------GGADDGLALTAVG 312

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D  QSIY + GA    + R          + G     +EL  S+R+  ++L + +     
Sbjct: 313  DPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPTLELRTSWRNPPEVLHLANAASVD 369

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                      S      +     + G+V+                             E+
Sbjct: 370  ARRR------SVEVRSLQPRPNAEPGSVRAALL----------------------SDVEA 401

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                +A ++A+           +  G      A    VLVR+  D   +        +  
Sbjct: 402  ERDWVADQVAHR----------WHGGLAASGTAPTAAVLVRRNADAAPMADAL----SRR 447

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             + V       L     + D++A+ R  +      + V +L  P +     D+  +  + 
Sbjct: 448  GVPVEVVGLAGLLAVPEVADVVAMLRVAVDPTAGAAAVRVLTGPRWRLGARDLTALWRRA 507

Query: 461  ----HETETVYEYIQK--------------------------FANCGISKFQHVIKYIHE 490
                    +  + +                             A    + +  ++    E
Sbjct: 508  VTLVDTGPSASDAVSATAEIVAKLEPDADDACLADAVCDPGPAAAYSPTGYARIVALGRE 567

Query: 491  LIHIAQFC--SPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSY 544
            L  +         D    I        +  +      G    + LD F +          
Sbjct: 568  LTALRAHLSSPLPDLVAEIRRTLGIDAEVRAAQPISAGWSGTEHLDRFGDVVAEFASRGT 627

Query: 545  SSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             +   L++ L+              + + + V+I+TVH AKGLE  +V +     +VF  
Sbjct: 628  PTASGLLAYLDTAEQVENGLAPAEVTVSSDRVQILTVHAAKGLEWQIVAVPHLVGRVFPS 687

Query: 601  KHIKKMHIMPSLNDDPGIP----------------IWIPQSKSRNNIVSDLIKHLKKSTQ 644
                +  +  + +  P +                   +   K  ++ ++     L +   
Sbjct: 688  TASPRTWLTDAADLPPLLRGDCATVSAHGVPVLDTSDVSDRKGLSDKIAAHKSSLDQRRT 747

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT------------------WYDMVY 686
            +E  RLLYV +TRA   L++  H   + E K    +                      + 
Sbjct: 748  DEERRLLYVAITRAEHTLLVSGHHWGATESKPRGPSTFLTEIKDVIDASIEEGRPCGSIA 807

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK-------- 738
                     +   + + + +  W     +                   +  +        
Sbjct: 808  VWADAPADGETNPIRDRVVEAVWPVDPVAGRRGPVDRGAHLVAEALSGECPEVGSDDDHG 867

Query: 739  --------IPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------LESLLSDNQTFNR 782
                    + ++  +  +   + P  L+ S +   G+                 +     
Sbjct: 868  WVADVDALLAERDLAAQRAVPSLPAQLSVSAMVELGRDPEAVAHRLQRRLPRRPDSHALL 927

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            G   H+ +Q  F       +          A     ++   L    T    +P       
Sbjct: 928  GTAFHEWVQRYFQA-----EKLFDLDDLPGAVDADRQDRGELDELQTAFAVSPWAA---- 978

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHI 901
                + + V    +      I+ GRID I         + ++KT   +P + E + +   
Sbjct: 979  ---RTPIDVEVPFDMMLAGRIVRGRIDAIFADGDGSFTVVDWKTG-EMPTDPEVLAHN-A 1033

Query: 902  AQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNK 942
             QL++Y       +  P  ++     YV   +   +P     +
Sbjct: 1034 LQLAVYRLAWARLHGCPTSAVRAAFHYVRSGRTV-MPDALPEE 1075


>gi|303252517|ref|ZP_07338680.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|307247266|ref|ZP_07529315.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648485|gb|EFL78678.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|306856239|gb|EFM88393.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 672

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 109/675 (16%), Positives = 225/675 (33%), Gaps = 131/675 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +    +     F       L +   P+     +++ K    L   +   +++   +    
Sbjct: 97  KLLGFKSGMTLFDEHDQLALLKHLLPENAAEDKDLLKA---LISTISNWKNDL--LSPEM 151

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              ++         +  +    Y+   K    LDF+DLI+    L ++   +     +  
Sbjct: 152 VLTRVRDERE---RVFSHFYQLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKT---RWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q++ ++L+DE QDT+  Q+E+I+ L  +                VGD+ QSIYS+ GA+P
Sbjct: 206 QKVRYLLVDEYQDTNTSQYELIKLLVGN----------EANFTVVGDDDQSIYSWRGAKP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + + R +               +I+L  ++RS+  IL   + +    ++       S  +
Sbjct: 256 ENMQRLREDF---------DLKVIKLEQNYRSSQRILHCANILIDNNDHIFQKRLFSNLS 306

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              + +                                   + +  +    A RI     
Sbjct: 307 EGEKLN-----------------------------------VIEAKNEEHEAERIV---- 327

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                  + ++      + KD  +L R    + L+      L    +I    +       
Sbjct: 328 -----GELIAHRFSNKTKYKDYAILYRGNHQSRLLEK----LLMQNRIPYKISGGTSFFA 378

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY---- 469
              IKD+MA  R +++Q+DD +F+ ++ +P        + K+      +  +++E     
Sbjct: 379 RAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGAVTLEKLGLLANEKQVSLFEAIFDF 438

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
             IQ+         Q   ++I E+   A+   P      +L   +            +  
Sbjct: 439 ELIQRLTPKPYQALQDFARWIVEIADQAERSDPIQAVKDLLAKIQYEAYLYETAVSPKAA 498

Query: 523 NEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 +     +        E     +L ++++ L       +       ++V++MT+H
Sbjct: 499 EMQSRNVQTLFEWVQGMLEGDEIEEPMTLVQVVNRLTLRDMLERGEDDDEADQVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P +FLV     +  H+                                     
Sbjct: 559 ASKGLEFPHIFLVGMEEGILPHQTSLD--------------------------------- 585

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +   EE  RL YVG+TRA   L   +CK      E    + + + +          ++
Sbjct: 586 --EDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKPEPSRFLLELPQDDLVWEIE 643

Query: 697 KIKLTNSINKDEWIA 711
           K K+T     ++  A
Sbjct: 644 KPKMTEEQKVEKTSA 658


>gi|117618529|ref|YP_858660.1| ATP-dependent DNA helicase Rep [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559936|gb|ABK36884.1| ATP-dependent DNA helicase Rep [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 670

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/638 (15%), Positives = 205/638 (32%), Gaps = 124/638 (19%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +   E++     L   + +  +    +       ++ +       L   L 
Sbjct: 111 TDQLALLKELTEAELDNDKDKLSALISQISNWKNDLILPARAMRIARGPEE--VLLAQLY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y         LDF+DLI+    LLK  +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 ERYHRQMVAYNALDFDDLIVMPTLLLKSNEE---VRTRWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ +  +                VGD+ QSIYS+ GA+P+ ++                
Sbjct: 226 LVKQIVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLNEDFP--------S 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS   IL   + + +   +           +  ++        V+L    
Sbjct: 268 LKLIKLEQNYRSKKRILKCANILIANNPH-----------VYDKALFSELDEGVKLKVLF 316

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
               +                          A RIA           +  +      + K
Sbjct: 317 AKNEE------------------------HEAERIAAE---------LMGHKFMNRTRFK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKD+MA  + +++ ++D
Sbjct: 344 DYAILYRGNHQSRIFEKAL----MTNRIPYRISGGTSFFSRTEIKDIMAYLKLLVNPDED 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKY 487
            +F+ ++  P        + K+        ++++    +            S  Q    +
Sbjct: 400 TAFLRVVNLPRREIGPTTLEKLGQYANQRGKSLFAASFELGLEQHLSGRGLSALQAFTNW 459

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN--- 539
           +  L   A   +P +    ++      +         +     +  +     +       
Sbjct: 460 LVRLGDQALRGNPVEAVRDMIKEIHYEEWLYETSPSPKAAEMRMQNVSTLYRWITEMLEG 519

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E     +L ++++ L       +       ++V++MT+H +KGLE P V++V     + 
Sbjct: 520 DELEEAMTLAQVVTRLTLRDMMERNEGEDEADQVQLMTLHASKGLEFPYVYMVGMEEGLL 579

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL YVG+TRA
Sbjct: 580 PHQTSID-----------------------------------EDNVEEERRLAYVGITRA 604

Query: 659 SDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
             +L   +CK      E    + + + +       +  
Sbjct: 605 QTELTFTLCKERRQYGESVRPEPSRFLLELPQDDLEWE 642


>gi|293609015|ref|ZP_06691318.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829588|gb|EFF87950.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325121212|gb|ADY80735.1| ATP-dependent DNA helicase [Acinetobacter calcoaceticus PHEA-2]
          Length = 679

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 215/632 (34%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ I      +T +  +          +L   YE  
Sbjct: 127 RDNLSGAESKELIAKAMKKISDWKNDLILPEQAHSTCETPEDVQ-----FAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQEN---AEVRDKWQNRVRYLLVDEYQDTNTAQYILVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   K+              II+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLKQDFPN--------LHIIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  ++   +  ++D 
Sbjct: 281 EQNYRSTSRILKAANCVIQNNPHIFDKKLWSDK------------GHGEVIRIITCRNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A R+   + +++    +           KD  VL 
Sbjct: 329 D-----------------------EAERV---VKDLLTHKLMNGK------NWKDYAVLY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARVLETQLRQMQ----IPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHEL-I 492
           + +P        + K+    +    ++                  ++      +I     
Sbjct: 413 INTPKRAIGPVTLEKLGLFSQENNLSLLGASADQRLSMVLPKKAETQLHEFADFIATFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFL----NFTLRNEQNS 543
            + +   P      ++           +           D ++       N   R E   
Sbjct: 473 ELLEDDEPVPKVRQMMNEAGYMDYVREQSATPAQEKSKLDNIENLFTSIQNLINRAEDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I +L       ++    + ++V ++T+H AKGLE P V+++    ++  HK+ 
Sbjct: 533 EKNIESVIRKLVLLDLLEQQQEEEDTDKVNLLTLHAAKGLEFPYVYIMGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IAAETIEEERRLMYVGITRARQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   ++   
Sbjct: 618 LTLAEQRKNGGQMKQMTPSRFLDELPQDELEW 649


>gi|262166384|ref|ZP_06034121.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223]
 gi|262026100|gb|EEY44768.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223]
          Length = 1208

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 126/888 (14%), Positives = 259/888 (29%), Gaps = 134/888 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    +      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   L  D             L  +GD K
Sbjct: 366  DEQGLLGDRIRTLYPVAMIDEFQDTDPLQYSIFSRLYLD--------HPQCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASPGADKRHWMLEGQVQPALTYWWPEDLDKP---QSKTDYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKRV--IQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++   +  +    R   I+A D+ VLVR   +  ++      L     
Sbjct: 521  QMAEACAAQIQHILTASSSGAASFYRGEVIEAGDLAVLVRTGNEARMVRD---ALSQQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++          +        D 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDAESATTWVDLTGNEDA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------ 683
            +    +    E  RLLYV +TRA     I      +        + +             
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 684  --------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                     +     N   V +        +                  +  +   ++  
Sbjct: 851  GGIADLQQALLKQCENLPDVAQCAPPERFEQAYQPPQLDERELTARELSQAIDRRWRVTS 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLII 786
               +  +      + + +  +L     D       +    +          +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQDIPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +      + +           ++   A+    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAQSEPNTKIILELMESEQIEAEWLPVLQHLVDTVLSTPLDGKALRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHPVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
            Q   ++ ++K++H       + P           +  Q  IY   L  
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALALHR 1138


>gi|329113313|ref|ZP_08242094.1| Putative DNA helicase II-like protein [Acetobacter pomorum DM001]
 gi|326697138|gb|EGE48798.1| Putative DNA helicase II-like protein [Acetobacter pomorum DM001]
          Length = 783

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 101/654 (15%), Positives = 188/654 (28%), Gaps = 119/654 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ +   Y+   K+    DF DL+++  ++L+       +  +  +   +IL+DE QDT+
Sbjct: 229 ARAIYTAYQARLKQLNACDFGDLMLHVTEILRT---RPDVLAQYHRLFRYILVDEYQDTN 285

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ+  +R L +           P  +  VGD+ QSIYS+ GAE + +LR ++       
Sbjct: 286 TIQYLWLRLLAK-------HAEGPANICCVGDDDQSIYSWRGAEVENILRFEKDFP---- 334

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RST  IL     + +      G +                     
Sbjct: 335 ----SAKVVRLERNYRSTRHILGAAAGLIAHNSERLGKTLRPGR---------------- 374

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                    + +       W S              AR +      +             
Sbjct: 375 ------EDAEGKKVSVLGVWDS-----------DTEARMVCEQAEKLRAQGHAL------ 411

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               K+I +LVR    T               +           +   I+D +A  R + 
Sbjct: 412 ----KEIAILVRAGFQTRAFEERL----MQTGLPYRIVGGLRFYERAEIRDALAYMRVLS 463

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISKFQ 482
              DDL+F  ++  P        + K+                             +  +
Sbjct: 464 QPADDLAFERIINVPKRGVGPAGLQKLHAAARANSLPLTGGTEKLLEDNALKGKSAAHLR 523

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
            +++       I            +L        +      +    ++ L E        
Sbjct: 524 QLMEAFASTRDILAREGHVVAVEHLLEESGYLDMWRQDRSPDAPGRLENLKELTRALADF 583

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                   + L   LE     +    +   + + IMT+H AKGLE   VFL      VF 
Sbjct: 584 --------RTLGEFLEHVALVMDHDENGQDDYLSIMTLHGAKGLEFDTVFLPGWEEGVFP 635

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +       +                                   EE  RL YVG+TRA 
Sbjct: 636 SQRTLDEGGL--------------------------------KGLEEERRLAYVGITRAR 663

Query: 660 DQLIICKHSN----TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            + II          + +     R   ++  +     +     +       +        
Sbjct: 664 QEAIIFHAGRRRIYANWQPSMPSRFLDELPDEHVVRHDEGGTFQRQGLNLSESVFDNGPI 723

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                  P+       QL D  + P+     + +       ++  ++ TK   +
Sbjct: 724 IARRRKDPMLEAAPALQLGDHVRHPRFGEGIVISADRHHVEVSFESVGTKRLLS 777


>gi|198284778|ref|YP_002221099.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666705|ref|YP_002427463.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249299|gb|ACH84892.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518918|gb|ACK79504.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 709

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 101/610 (16%), Positives = 191/610 (31%), Gaps = 123/610 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + + YE AKK++ ++DF DL++    L +  +    I     +   HIL+DE QDT+ +
Sbjct: 168 PIYSAYEAAKKRSGLVDFGDLLLYALRLWESPE----ILDHYQRRFQHILVDEFQDTNAV 223

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L                +FAVGD+ QSIY++ GA  + +LR            
Sbjct: 224 QYAWLKGLA-----------RHGQIFAVGDDDQSIYAWRGARVENLLRFGEDF------- 265

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RSTA IL   + + +   +  G +                       
Sbjct: 266 -AGARVVRLEQNYRSTAPILQAANAIIAHNSDRLGKTLW--------------------- 303

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   ++   +     + ++   +       AR +   +   +              
Sbjct: 304 -------TAEPGGESIQLYTAYNEFDE-------ARYVVGRVQQWLDDGG---------- 339

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D  +L R    +     +         +           +   IKD +A  R   ++
Sbjct: 340 RRADCAILYRSNAQSRAFEEVL----VREGMPYRVYGGLRFFERAEIKDTLAYLRLTANR 395

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            DD SF  ++  P        + ++    R    ++++   +       K    +  + +
Sbjct: 396 HDDASFERVVNVPARGIGAVSVERLRNLARERGLSLWQAAGELG---QPKISAFLNLVDD 452

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQF--ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
           L          +   ++L     R+            ++ LDE +N      Q+  +   
Sbjct: 453 LAARTAEADLGERVEMVLAHTGLREWHGREGDRAEGRLENLDELINAARGYAQDWSADPN 512

Query: 549 ----------ELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                      L   L             A  + V++M++H+AKGLE P+VFLV     +
Sbjct: 513 LGDLAPQPGNMLSEFLTHAALEAGDGAGDAWEDCVQLMSLHSAKGLEFPLVFLVGLEEGL 572

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H+                                            E  RL YVGMTR
Sbjct: 573 FPHQRSL----------------------------------EDPQGLAEERRLCYVGMTR 598

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A   L+I    +               + +      R  + +   S              
Sbjct: 599 AMRLLVISHAESRRLHGSERMTIPSRFLREIPRELLRELRPRARVSRPAMPVRVQAPEMP 658

Query: 718 HPENTPLERE 727
           +P    L+  
Sbjct: 659 YPLGARLQHP 668


>gi|194291146|ref|YP_002007053.1| DNA helicase and single-stranded DNA-dependent atpase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224981|emb|CAQ70992.1| DNA helicase and single-stranded DNA-dependent ATPase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 698

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/612 (16%), Positives = 183/612 (29%), Gaps = 126/612 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R K    + + L+DE QDT+
Sbjct: 171 AALVYRNYVATLNAYQAVDFDDLIRLPAELFARDEA---VRLKWQNRLRYFLVDEYQDTN 227

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L         +H       AVGD+ Q+IY + GA    +   +        
Sbjct: 228 ACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNLRGLQTDFPN--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +           S           G    + 
Sbjct: 279 -----LKVIKLEQNYRSTVRILEAANAVIANNPKLFDKKLWSEH---------GMGDPIA 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 IHPM--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      L   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 350 RAQFRDYAILYRGNHQARLFEQILR----RERIPYVLSGGQSFFDKAEIKDICAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + T   +   +++E         K     +   +
Sbjct: 406 NPDDDPAFIRAITTPRRGVGNTTLEVLGTFAGQAKVSLFEAAMMGGIEGKLQPRQLEPLR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFL----- 533
              + +  L   A      +    ++            F             EFL     
Sbjct: 466 VFCESMVRLADRAAKDPATEVLDDLMAGIHYEAYLYDSFDERQAQSRWTNTLEFLEWLKR 525

Query: 534 -----NFTLRNEQNSYSSLQELISE----LEQYPPTIKRAH----SANHNEVRIMTVHTA 580
                      E   Y +     SE    LE        +       + + VR+ T+H +
Sbjct: 526 KGTKPEAAEGEEATGYDNADGFGSEGKNLLELTQTVALMSMLEGREEDPDAVRLSTLHAS 585

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE P VFLV     +  H                                      + 
Sbjct: 586 KGLEYPHVFLVGVEEGILPHCREDD--------------------------------DMT 613

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
               EE  RL+YVG+TRA   L I         +++        + +    +        
Sbjct: 614 DEKIEEERRLMYVGITRAQRSLQISWCKKRKRARETYSCQPSRFIGEMKLEEAPAPVDAT 673

Query: 701 TNSINKDEWIAY 712
                KD   A 
Sbjct: 674 PAMSPKDRLGAL 685


>gi|294341124|emb|CAZ89525.1| ATP-dependent DNA helicase [Thiomonas sp. 3As]
          Length = 669

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 114/706 (16%), Positives = 231/706 (32%), Gaps = 129/706 (18%)

Query: 4   RFGLSLNESYE-LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKK-AQTLQQASQTQC 61
           R GL  ++                + + +     ++ +    T      + L+++ Q   
Sbjct: 40  RAGLEPDQIAAITFTNKAAAEMRERAAQLVDKRGVASKLAISTFHALGVRMLRESGQALG 99

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
           ++ +FS+L++  +T     +    T +  +         ++ Q      ++   T +   
Sbjct: 100 LKPKFSILAADDVT--GLLRDAGATTDNAQA--------RRWQWTISLWKNAMLTPEAAA 149

Query: 122 STL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                    +A  + A Y +  +    +DF+DLI     LL++    A +R     ++ +
Sbjct: 150 RVAENDDERVAAKVYARYADMLQAYQAVDFDDLIWLPVTLLQQH---ADVREHWQNKLRY 206

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+  Q++++R L  D               AVGD+ QSIY + GA    + R
Sbjct: 207 LLVDEYQDTNAAQYDLLRLLVGD----------KGRFTAVGDDDQSIYGWRGATLDNLRR 256

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +               +I+L  ++RST  IL   + +          S  S        
Sbjct: 257 LQTDWPT--------LEVIKLEQNYRSTNAILRAANAIIHSNPKLYPKSLWSEH------ 302

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
              G+   V++                              +    A+ +A  I  +   
Sbjct: 303 ---GEGEAVEV--------------------------RAAQNEDEEAQMVAARIQALRSG 333

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                    R  +   I VL R    +  +    R       I  V +      D   IK
Sbjct: 334 ---------RNAELAHIAVLYRANHQSRPLEQALR----RANIPYVVSGGQSFFDRAEIK 380

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFAN--- 475
           D+ A  R + + +DD +F+  + +P        +  + T   + + +++E + + +    
Sbjct: 381 DVCAYLRLLANPDDDPAFLRAVTTPRRGIGPQTLAALSTFAGQWKVSMFEALFRDSMPAA 440

Query: 476 ---CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVID 527
                    +   + +H++   A+     +    +L     R          R   +   
Sbjct: 441 VGARPADHLREFGRLLHDIEWRARTAPAGELLREMLETIGFRAWLEEHSDNPREAEQRWK 500

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +D+F  +  R  +     L ++   +     T  +      + V + T+H AKGLE P 
Sbjct: 501 NVDDFCGWIERKAEEDKVGLTQIAQTISLI--TQLQERGEQRDAVTLCTLHAAKGLEWPH 558

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V L      +       +                                    +T EE 
Sbjct: 559 VVLAGCEEGLLPFFTDDRPLT--------------------------------DTTLEEE 586

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            RL+YVG+TRA   L++         + +  R+    + +      
Sbjct: 587 RRLMYVGVTRARQTLVLSWCQKRKQGRGAAGRSPSRFIGEMQTGQP 632


>gi|325269817|ref|ZP_08136427.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM 16608]
 gi|324987790|gb|EGC19763.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM 16608]
          Length = 843

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 114/733 (15%), Positives = 207/733 (28%), Gaps = 138/733 (18%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L    +      +K      ++      K +L  + +     R   N  ++ +       
Sbjct: 126 LIKSIVKALGLDEKTYKPAAVHNFISMAKNRLITASEYAED-RAALNRDRIVRMPA---- 180

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               +   YE   ++   +DF+D+++ T  L +       +R K  Q   +IL+DE QDT
Sbjct: 181 -VYQIYKAYEARCRQANAMDFDDILLYTYLLFRDH---VDVRKKYGQLFEYILVDEYQDT 236

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q  +I  L           ++ R +  VGD+ QSIYSF GA    +L  +       
Sbjct: 237 NFAQVSIISQLA----------NTHRRVCVVGDDYQSIYSFRGANIDNILDFREKF---- 282

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   + +L  ++RST  I+   + +    E        S     H+          
Sbjct: 283 ----TDARLFKLERNYRSTQLIVQAANSLMKHNERQIPKEVYSEEGEGHKVLYKP----- 333

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                                           S    A  +A  +  +   +        
Sbjct: 334 ------------------------------CYSDREEAMVVAGELRRIKRDER------- 356

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                    +L R    +       R       I               IKD++A  R +
Sbjct: 357 --CDYGSFAILYRTNAQSRPFEDEFR----KQGIPYKIIGGLSFYQRKEIKDIIAYFRLV 410

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE-------YIQKFANCGISK 480
            + +D+ +F  ++  P        + KI    +H   +++E       Y        ++K
Sbjct: 411 ANPDDEEAFRRIINYPARGIGSTTVQKIVDCAQHHAVSLWETILNPIGYGLNVNKGTLTK 470

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
                  I   I  A     ++  + I+          S    E     + L+EF++   
Sbjct: 471 LLAFKTLISGFIKKAALTDAYELGSEIIEESGIGADIRSGRDPEDLARRENLEEFMSAMQ 530

Query: 538 RN-----EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                  E+    ++  L   L++    T       +  +V +MT+H AKGLE P VF+V
Sbjct: 531 DFVDIGREEGREENVY-LTDYLQEVALYTDADKKDDDTPKVTLMTIHAAKGLEFPTVFVV 589

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                VF                                                   LL
Sbjct: 590 GLEENVFPSPMASGSRREVEEERR----------------------------------LL 615

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YV +TRA    I+    N         R     V D     + +    L    N  +   
Sbjct: 616 YVAITRAERHCILTNARN-------RFRYGTMQVDDPSRFLDDIDASLLQEENNGSDVFR 668

Query: 712 YEWSTHHPENTPLER---EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
            +      ++ P +R        +        +      +         NP     +   
Sbjct: 669 TQRQKMPWDDDPCKRSGGSTREYEPNRPYTGSRPWGQEYRQMGARWQNANPVASQFRADP 728

Query: 769 -NLESLLSDNQTF 780
               +     +  
Sbjct: 729 KPKITERKRPEAA 741


>gi|218708696|ref|YP_002416317.1| exodeoxyribonuclease V subunit beta [Vibrio splendidus LGP32]
 gi|218321715|emb|CAV17669.1| Exodeoxyribonuclease V beta chain [Vibrio splendidus LGP32]
          Length = 1224

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 142/992 (14%), Positives = 303/992 (30%), Gaps = 145/992 (14%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            ++++  + ++           +   +  +  +   + + + K    +++       E  +
Sbjct: 228  AMSDDLQTLHNQNLDKVKQLKALWCESEADFLALISGSDVNKRSYTKKSLP--TWLEAVT 285

Query: 68   LLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
              +         P K        + +K+P         Q    +  + F +         
Sbjct: 286  AWAQSDTNDYQFPDKLEKFSQATLIEKTPKG----TAPQHAVFEAIEDFLSSPADLKAPL 341

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                  +      +AK++   L F+DL+          D  + +  +I       +IDE 
Sbjct: 342  LAHAITHCRTMLAKAKQQKQWLSFDDLLTQ-LSASIDVDEQSLLVERIRTLYPVAMIDEF 400

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT  +Q+ +   +  D        +    LF +GD KQ+IY F GA+    ++ +    
Sbjct: 401  QDTDPLQYSIFSRIYLD--------NPQCGLFMIGDPKQAIYGFRGADIFTYIKARNQVS 452

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
               T          L +++RS+AD+++ V++VF   ++     +D        S    + 
Sbjct: 453  AHYT----------LGINWRSSADMVSAVNQVFMNSDSPFIYDQDIPFLPVAASPSADKR 502

Query: 306  GTVQLWEQVVSQHDSQCNPQQESW--TSYFDSLPQESSASILARRIAYTISNMI-----G 358
              V          + Q       W   +    LP+      +A   A  I  ++      
Sbjct: 503  QWV---------MNGQTQHALTFWLQDAEDKPLPKGEYHKAMAEATASQIQTILTASQNE 553

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                 +  K+  + A DI VLVR   +  LI      L      SV  ++R  +   L  
Sbjct: 554  RAYFDNGKKQHAVNAGDIAVLVRTGSEGRLIKN---ALSEQGIASVYLSNRDSVFTSLVA 610

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +D+  L + +L+ E+D +    L S LF      + ++       E V    +++    +
Sbjct: 611  QDIQRLLQGVLTPENDRALRASLASELFALDAASLDELNNDEVVWENVVNEFREYRKLWL 670

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
               + V+  +  +I              +L  + G +             + E L    +
Sbjct: 671  Q--RGVLPMLRSVISKRH------LAERLLEEENGERSLTDLM------HIGELLQQARQ 716

Query: 539  NEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
               + Y  L+ L   +              +   +  N V+I+T+H +KGLE  +VFL  
Sbjct: 717  ELDSDYGLLRWLAEAISDAQNGLGGSEDDIQRLESERNLVQIVTIHKSKGLEYDLVFLPF 776

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
              S                 ++          +          +    K    E  RL+Y
Sbjct: 777  VAS-------------YREASEGKFYDHESDTTVLDITGSDSALAQADKERLAEDLRLIY 823

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQ-----RTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            V +TRA     I                        +V +            L+    K+
Sbjct: 824  VALTRAVYGCFIGMAPLRKGRSTKEPTGVHLSAMGYLVQNGQEQGIAELHQALSAIEGKN 883

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP-------------IKNDINEP 754
              +    +    E+  ++ E+  + L   +       +                   +  
Sbjct: 884  SSVLLSGTPTAHEHVFVQTEQVSEDLHANELKASIDRAWRITSYSGLVKQGSHGASHDAT 943

Query: 755  YILNPSTIDTKGK-------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---NF 804
              ++   ID+  +           S+ +  +    G  +H L + +        +     
Sbjct: 944  IEVSGFDIDSADEQDESELIEPERSIFTFPRGARPGTFLHTLFEDVEFTEPATSEHNTQV 1003

Query: 805  ITSYCT-KNAKLWPAKEYKNLLLSITRLL---ENPMMTTAMSCDSYSEVSVSGKINCPKK 860
            IT     +  +L      + L+ ++       ++  ++   S     E+     I     
Sbjct: 1004 ITHLLECEQYELEWLPVLQQLVDTVLNTALDGKSLKLSDKDSTQRLVEMEFLLPIEVLAA 1063

Query: 861  -------------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQ---- 891
                                       ++ G ID +   Q   ++ ++K++H        
Sbjct: 1064 SELNQTIQYHDPLSAKAGDLGFQTVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVAVY 1123

Query: 892  EIEHIP-----YTHIAQLSIYEKILKDSYPNK 918
              E +      + +  Q  IY   L     ++
Sbjct: 1124 HGEALKSAMADHRYDLQYQIYALALHRFLRSR 1155


>gi|281355725|ref|ZP_06242219.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548]
 gi|281318605|gb|EFB02625.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548]
          Length = 1235

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 133/1009 (13%), Positives = 294/1009 (29%), Gaps = 149/1009 (14%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMET--GNPTILKKAQTLQQASQTQ 60
               G       E + +    L   ++ +                   +     ++     
Sbjct: 212  AEAGTDPAADLEELAEGFGELRREELPECLANFPYLFNKPFSGKDFDRFIAAYEKFRADG 271

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                 F  L + F           +       +P     L++ Q+    I ++    ++F
Sbjct: 272  VPTGEFLQLLAAF---TPEALTEALCARKKSGAPSQFAALEQRQEALAGILEQSELQRIF 328

Query: 121  KSTL--------ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
            +             L   + L A Y+ AK++  +  F+D+I + +  L + +    ++  
Sbjct: 329  QLAELAPRFGDTVLLAAVEELLAAYDRAKQQANLQTFDDMIRDVHRALMEPESR--LQRS 386

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            + Q+    ++DE QDT  IQ+ + + +  D            TLF VGD +Q+IY F G 
Sbjct: 387  LQQQYPLGIVDEFQDTDPIQYAIFKKIFIDPAEPGGA-VPAATLFLVGDPRQAIYGFRGG 445

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +     R      +         +   L  +FRS A ++  V+ +FS   +       + 
Sbjct: 446  DIDTYNRAADDVFRY------GGAKYTLTRNFRSAAGMIEAVNLLFSRHASPFASERITL 499

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              I    ++       +    V  + D +     +   S  D+    +     A     T
Sbjct: 500  PEIS-APAKPELGNRPESALLVAGREDRRPLRITDLPDSDGDACLAAAVEIANALLCDDT 558

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +          S+  +R ++  DI +LV+K  +     +  + L     I  V ++   +
Sbjct: 559  L-----HIPPRSDTPERRLRPGDIAILVKKWSEA----YALKPLLAARMIPSVFSNSESV 609

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  ++L+ +   I + E     +  L + L      ++ ++ ++    E        
Sbjct: 610  YRSDEARELLTVLAAIAAPERSGEVLAALATGLGGCGLAELLRLGSEEGSNELAEHQTAF 669

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                   + +  I     L+         D        + G ++            L + 
Sbjct: 670  ARLRREWRPETFIVMFSGLLKY------FDIPARFARQEGGERKLA---------NLHQL 714

Query: 533  LNFTLRNEQNSYSSLQELISEL--------EQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             +   +       S+  L++ L        +     +K+   ++ + V+I TVH++KGLE
Sbjct: 715  GDLLQQESSRRKLSINALLNFLSDAVEGRIDDSSDEVKQILESDRDSVKITTVHSSKGLE 774

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV L          +               G            +    + +       
Sbjct: 775  YPVVILPSLFRFATGSRSP------------GGNFHEDGHLVYELHAAGSMNEREHDEAT 822

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK-------- 696
             E  RL YV +TRA  +  +    + ++   ++   W     ++   +            
Sbjct: 823  MENLRLAYVALTRAKYRCHVLWGKDGASSYCNSPLDWLVKFREATPEEAAHPTRFLKMRK 882

Query: 697  -KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
               +L     +++ +      + PE     +    +      +   ++ S          
Sbjct: 883  DAPRLLPVELEEKTLPVSTQVYRPELDRSRQLAPWEWNHRVLRDHYRIASFSSLSPAASG 942

Query: 756  ILNPSTIDTKGKTNLESL---------------LSDNQTFNRGLIIHKLLQVIFTLPE-- 798
             L+P+        +                   L+       G  +H++L+ +       
Sbjct: 943  RLDPADDGADHDDSQPEEQLPALSETAPEKNPALALPGGKAFGNAVHEILEELDFTAPFD 1002

Query: 799  HKRKNFITS-----YCTKNAKLWPAKEYKNLLLSITRLLENPM---------MTTAMSCD 844
              R+              +      +    +   + R    P+         ++     D
Sbjct: 1003 TLRELAARKLRFYGLLAGDGSGADRERLDAVAAMVERTRRAPLHDAQGDGFTLSQIGRAD 1062

Query: 845  SYSEVSVSGKI-----------------------------NCPKKDIIISGRIDQISI-- 873
              SE+                                   N P     ++G ID +    
Sbjct: 1063 RLSELRFLFGFGRKFRTGEIAELLGDYAEREFRFTDWPEWNTPVDGGFLNGFIDLVFRRR 1122

Query: 874  --SQQNIFIFEYKTHHHVPQ----EIEHIPYT-----HIAQLSIYEKIL 911
              S     + ++KT+    +        +P       +  Q   Y   L
Sbjct: 1123 TASGDRYSLVDWKTNRLDGEPANFTPAQLPAAMSHSYYFLQYLFYTVAL 1171


>gi|139439548|ref|ZP_01772980.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC
           25986]
 gi|133775101|gb|EBA38921.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC
           25986]
          Length = 966

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 93/682 (13%), Positives = 193/682 (28%), Gaps = 103/682 (15%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +    E   +    +DF+DL++   +LL+       +  K  +   +I +DE QDT+
Sbjct: 223 AAQVYLELERRLRAANAMDFDDLLVRALELLRT---RPEVLDKYQERFRYISVDEYQDTN 279

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+E+   L   +          + L  VGD+ QSIYS+ GA+   +L  ++  +    
Sbjct: 280 HVQYEIANLLAAKY----------QNLMVVGDDDQSIYSWRGADITNILDFEKDFKN--- 326

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   ++L  ++RST  IL+  + V       +                        
Sbjct: 327 -----CKTVKLEQNYRSTGHILSAANAVVRHNSQRKDKRLF------------------- 362

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                     ++ + ++       D   +        R IA  I  +    T        
Sbjct: 363 ---------TAEGDGEKIQAFQASDERDEG-------RWIAGEIEKLHAKGT-------- 398

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                DI V  R    + ++  +         +           D   I+D+MA  + I+
Sbjct: 399 --SYDDIAVFYRTNAQSRILEDMF----LRAGVPYKIVGGTRFFDRAEIRDVMAYLKMIV 452

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYI 488
           +  D++S   ++ +P        I KI    R    + ++  +            V   +
Sbjct: 453 NPADEMSVKRVINTPRRGIGSTSIQKIEQLARDNHCSFFQACEIACAETGMFSAKVRNGL 512

Query: 489 HELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
              + + +          D   +I+      Q F +    E     + + EFL      E
Sbjct: 513 SSFVSLVREGRRMDGELKDVVEMIVDKTGLLQAFRAEGTMESESRAENIQEFLGVAAEFE 572

Query: 541 QNSYS---SLQELISELEQYPPTIKRAHSANHNEVRIMTVH---TAKGLESPVVFLVDTG 594
           +       +L+ L          +          V         +A       +      
Sbjct: 573 ETHEDIEGTLESLEELRAAGVADVPAGAEPEPVVVSAPAPEPGPSAPASSFEALVGARDA 632

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS----------TQ 644
           +       +    + P       I      + +     +     ++++            
Sbjct: 633 AGSNPLDRLAAPALSPQDALAAAIAGNAYAAPTEMPAGAVHADEIERTYGPLTCKALPAL 692

Query: 645 EEYNRLLYVGMTRA-SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            E+  L     + A     I     +++   +        M    F +            
Sbjct: 693 MEWLALRSDLDSLAGETHAITMMTIHSAKGLEFPAVFVAGMEEGIFPHVHDFGGSDDPGK 752

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
           + ++  +AY   T   +   L    T +        P+  F       +           
Sbjct: 753 LEEERRLAYVAITRARKRLFLTYAATRRTYGSTSANPRSRFLNEIPFEDI-------EFS 805

Query: 764 TKGKTNLESLLSDNQTFNRGLI 785
             G    E    + +   RG  
Sbjct: 806 GIGSAGFEGTGWEKRGDRRGTF 827


>gi|134103111|ref|YP_001108772.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003946|ref|ZP_06561919.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133915734|emb|CAM05847.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 873

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/718 (12%), Positives = 182/718 (25%), Gaps = 127/718 (17%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y+    ++  +DF+DLI+ T +LL+       +     +   H+L+DE QDT+
Sbjct: 194 VAQVYTAYQRRLAESNAMDFDDLIMRTVELLQGYPA---VAEHYRRRFRHVLVDEYQDTN 250

Query: 190 LIQWEVIRSLTEDFFVGKNTHS-------------SPRTLFAVGDEKQSIYSFHGAEPKR 236
             Q+ ++R L      G+                  P  L  VGD  QSIY+F GA  + 
Sbjct: 251 HAQYVLVRELVGTNRPGEPDADSEADADESGEETVEPGELCVVGDADQSIYAFRGATIRN 310

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   +R   +           I L  ++RST  IL+  + V     N +     S     
Sbjct: 311 IEEFERDYPE--------ARAILLEQNYRSTQTILSAANAVIRRNPNRRDKRLWS----- 357

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                                     + +Q       +   +       A  +A  I  +
Sbjct: 358 -----------------------DAGDGEQIVGYVGDNEHDE-------AAFVAGEIDRL 387

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +                 DI V  R    + +   +         +           +  
Sbjct: 388 VDEGE---------ATFNDIAVFYRTNNQSRVFEEVF----IRLGLPYRVVGGVRFYERR 434

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK---- 472
            ++D +A  R + + ED +S   +L  P     +     +     +    +    +    
Sbjct: 435 EVRDALAYLRVLDNPEDTVSLRRILNVPKRGIGDRAEAVVAAHAEQERISFAAALRKAAA 494

Query: 473 -----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--- 524
                            ++ + EL  IA      D    +L     R +       +   
Sbjct: 495 GEVPLLNTRSQRAIAGFVEMLDELHGIAAESDVADVLEAVLDRTGYRAELEDSDDPQDAT 554

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----------------- 567
            ++ L E +       +           +  +                            
Sbjct: 555 RVENLTELVTVAREFIEARSPEPAAAPGDNAEDLDDAAGDLGENTSDLGNSAEDAAAPGD 614

Query: 568 -------------------------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                                    +      +    +       V LV     +     
Sbjct: 615 GATGDEDAHASAEAVVAPAEPAAEDDDEAALGLPADDSLSAFLERVSLVADADSLPDSGD 674

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                +          P+        + I   +    + +   E  RL YVG+TRA  +L
Sbjct: 675 GVVTLMTLHTAKGLEFPVVFCTGW-EDGIFPHMRALGEPAELAEERRLAYVGITRARQRL 733

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            + +    S   +         + +        ++I+   +  +        ++      
Sbjct: 734 YLSRALMRSAWGQPMTNPASRFLTEIPDELVHWRRIEPERAAPQVRSTWGRRNSGFDRGG 793

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
               +  + +        K     +   ++    +             E         
Sbjct: 794 SDSAQAGLAERGMRSTPAKGWKDAVAIKLDAGDRVTHDKYGLGTVIATEGEGPRATAT 851


>gi|258652355|ref|YP_003201511.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258555580|gb|ACV78522.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 1106

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 153/1014 (15%), Positives = 276/1014 (27%), Gaps = 161/1014 (15%)

Query: 49   KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
             A+ L      Q             LT     Q       I+    D    +    DE  
Sbjct: 133  AARVLTPTGAWQLARRVVGRWDGDLLTDLGPDQVTERLLAISSALADHLTDVDLLSDELA 192

Query: 109  KIRDRFNTYKMFKSTLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLII 154
             + DR  +        A+L                   L A Y  AK+   V+DF D + 
Sbjct: 193  TVLDRLRSAPPGPRQRAALHSGLAGPVKRLQDRQWILPLVAAYVRAKRDRGVVDFADQMQ 252

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNT 209
                L+++      I   + +    +L+DE QDT   Q  ++RSL  D        G   
Sbjct: 253  IAATLVREHP---RIGEAMRERYRVVLLDEYQDTGHAQRVILRSLFGDRDGAGRAGGHGQ 309

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  + AVGD  QSIYS+ GA    + R           +G+  SI  L  SFR+   
Sbjct: 310  ARWGHPVTAVGDPVQSIYSWRGASASNLPRFVTDFP---LASGRPSSIRSLLTSFRNPGA 366

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            +L + ++V             +      R +     G ++      ++ ++         
Sbjct: 367  VLALANEVSRPVRQGG----RAVEVGELRPTPAADPGRLRYGLFGTAEQEN--------- 413

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                         + LA  IA    + +                    VLVR+R D    
Sbjct: 414  -------------AWLAEAIAGYWRDALDEGGA-------GATPPTTAVLVRRRSDMADT 453

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                R       + V       L D   + DL+A  R ++      + + +L    +   
Sbjct: 454  ADALRA----AGLPVEVVGLGGLLDEPEVADLVATLRVLVDPTAGPAAMRLLTGARWQLG 509

Query: 450  EDDIFKICTQRH----------------------------------ETETVYEYI----- 470
              D+  +  +                                    E    +  +     
Sbjct: 510  AADLEALAARARELAGPARPADGHGAGGPADPTAVVRSAVAAALPVEDIDTWSMVDAAGD 569

Query: 471  ----QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
                Q ++  G  +      ++  L        P     L        +  ++  G   +
Sbjct: 570  LGPAQAYSAAGHRRLVRFAAHLARLRARLNQPLPDLIADLERACHLDVESLVAGTGRAHL 629

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            D     +             L+ L +  E+               V+++TVH AKGLE  
Sbjct: 630  DAFAAVVAEVAATGAGPAELLEYLDAAAEREDGLTPGEVPQPSGRVQVLTVHAAKGLEWE 689

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMP--------SLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +V +      VF           P           DD     W      ++   +     
Sbjct: 690  IVAVPHLTEGVFPITRGSTWLGDPAQLPPQLRGDRDDLPQLAWPAGGTQKDLADALAAHA 749

Query: 639  LK--KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +  +    E  RLLYV +TRA   L+   H   +   K    + +     +        
Sbjct: 750  AEFGELRLTEERRLLYVALTRAERTLLFSGHHWGTGLAKPAGPSPFLEECAALARPFAEP 809

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                      +       +   P +    R   ++   D         +  + +  E   
Sbjct: 810  DEWAPPPATDEGQQLLPRTAVWPIDPLGPRRPHVQVGADRVLQALADLAAAEPEPVEDRP 869

Query: 757  LNPSTIDTKGKTNLESLLSDNQTFN--RGLIIHKL----------LQVIFTLPEHK---- 800
                 +DT       + ++        RG  +H++          L  +   P       
Sbjct: 870  GTADEVDTGDPFGWAADVTTLLAERSDRGREVHEVELPGTITVTSLVELADDPAELARRL 929

Query: 801  -------------RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN----PMMTTAMSC 843
                         R     ++     +     E  +L  +    +        +      
Sbjct: 930  TRPVPTESSGRLSRGTDFHAWLEHRFRGEALLELSDLPGAGDAWVGADPEIEDLKRRFLA 989

Query: 844  DSYS---EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYT 899
              ++    + V          + + GR+D I       I + ++KT H   +E       
Sbjct: 990  SPWADRVPIDVEVPFASRIAGLGVRGRVDAIFADADGGITVVDWKTGHSPLREDAA---- 1045

Query: 900  HIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNK-AFAEISTK 950
               QL+ Y   +   +  P   +     YV    V   P N L+      +  +
Sbjct: 1046 -AVQLACYRLAIAQLHGLPLARVRAAFHYVRSG-VTQSPANLLDADGIEALIAR 1097


>gi|254458799|ref|ZP_05072223.1| UvrD/REP helicase subfamily [Campylobacterales bacterium GD 1]
 gi|207084565|gb|EDZ61853.1| UvrD/REP helicase subfamily [Campylobacterales bacterium GD 1]
          Length = 682

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 111/611 (18%), Positives = 204/611 (33%), Gaps = 133/611 (21%)

Query: 82  KNIITQEINKKSPD--LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           K  I ++IN + P   +  ++ + ++  +   D +   ++F            +   YE 
Sbjct: 117 KKRIIKKINSEIPTPLIASEISRYKNSLLTPDDAYKQAELFN-----YQQIAKVYEEYEA 171

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             ++N ++DF+DLI  T  LL +      +     Q+  +I+IDE QDT+          
Sbjct: 172 YLRENNLVDFDDLIALTYKLLDENP---KLAETTSQKYQYIMIDEYQDTNE--------- 219

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                + +   +S   L  VGD+ QSIY + GA  + ++   +          +  S  +
Sbjct: 220 -LQLKLLQKLCTSHNNLCVVGDDDQSIYGWRGAHIRNIIEFDQDF--------KGTSTFK 270

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS   IL V + +     +  G    +T                           
Sbjct: 271 LENNYRSKEPILKVANALIEHNRSRLGKKLIATR-------------------------- 304

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                +  S  +  D   +        R+IA  I  ++ +           ++A DI +L
Sbjct: 305 --GAGEDVSIINSHDENEES-------RKIAQKIKKLLDSG----------VRANDIAIL 345

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  I        N   I+          D   IKDL++  R I +  DD SF  
Sbjct: 346 YRVNVLSRSIEEGL----NRTGIAYKLVGGLRFYDRAEIKDLISYIRIITNFHDDFSFKR 401

Query: 440 MLKSPLFNFSEDDIFKICTQRH----------ETETVYEYIQKFANCGISKFQHVIKYIH 489
           ++  P     +  I KI    H          +  ++ +          S  +  IK I 
Sbjct: 402 VVNKPKRGLGKASIEKIELAAHASSSSIYEYIKKTSLADLETLVRKKNASTLKTFIKDIE 461

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSS- 546
           ++  +A   + ++F   +L      +   +   +E      +DEF        + S  S 
Sbjct: 462 KVSKVATEST-YNFID-VLEETFHLKNIYAGMQDEAERILNMDEFYGLFRDFVKKSPESG 519

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L E ++EL                 + +M++H +KGLE   +F++               
Sbjct: 520 LDEFLNELTLQSE----QDQVEGESIYMMSIHASKGLEFEHIFIIGLEEGFLP------- 568

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                              S  EE  RL YV  TRA + L +  
Sbjct: 569 ------------------------------LIGDGSDLEEERRLGYVSFTRAKETLTLSH 598

Query: 667 HSNTSNEKKSN 677
             +   + + +
Sbjct: 599 AGSRFYKGRRS 609


>gi|83643128|ref|YP_431563.1| exodeoxyribonuclease V subunit beta [Hahella chejuensis KCTC 2396]
 gi|83631171|gb|ABC27138.1| exodeoxyribonuclease V, beta subunit [Hahella chejuensis KCTC 2396]
          Length = 1181

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 137/978 (14%), Positives = 286/978 (29%), Gaps = 122/978 (12%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            +  +   + +      L        +   +   E     IL +A+   +  +        
Sbjct: 197  IRPDVDPQALSHLAGALKAQWRQQGDDLTAAVREAAENKILGRAEKTYREDKLNDAILSL 256

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKK---SPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            ++ S         P   + +Q +           + L   Q  F    D+F T +     
Sbjct: 257  TIWSRTEEQMTLPPAAALFSQSVLDASVLKKAADKGLGAPQHAFFTALDQFLTQQTQLDA 316

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                          +  K +  +L F+DLI +  D L        +R  + +     LID
Sbjct: 317  WLVGATLTAFKDVLQRLKTQAEILGFDDLIGSLKDALAA-ATGPQLRQALQRRYPVALID 375

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT   Q+ +  SL +             TLF +GD KQ+IYSF GA+    L+ K+ 
Sbjct: 376  EFQDTDPSQYRIFSSLYD-------AADGNATLFMIGDPKQAIYSFRGADIYAYLQAKQR 428

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              +         +   +  ++RS  +++  V+ +F    N    + D        +    
Sbjct: 429  TPQD--------NRYTMDTNWRSRKELVAAVNGLFEQCANPFLFAGDIEFIPVQAAGAAD 480

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                      V          +         ++ ++ +   LA+  A  I+N +      
Sbjct: 481  ASVLTLDDVPVTPLQAWLLGREDGG-----KTISKDQARPQLAQITASEIANWLNLGECG 535

Query: 364  SNG-KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                 +R + A DI VLVR  K   +++     +     +S V   R  +       DL+
Sbjct: 536  RARLGERPLSAGDIAVLVRDNKQARIMSEKLSAV----GVSSVFLTRESVYQSEEATDLL 591

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L R +L   D+      L +  + ++  ++  +       E +   + +          
Sbjct: 592  RLLRALLEPNDERRLRAALVTLSWGWTAAELETLARDEQRWENMLTSLHQLREEWQD--A 649

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
              +    + +              +LG  +G ++  +      +                
Sbjct: 650  GFMPMFQKWLQN------FSVAARLLGLPEGERRLTNLLQLAELLQ-----QAGRDY-PT 697

Query: 543  SYSSLQELISELEQYP---PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                L     +LEQ        +    ++   V+I+T+H++KGLE P+VFL   G     
Sbjct: 698  PERLLAWYQGQLEQADGRGDEHQLRLESDEALVKIVTIHSSKGLEYPLVFLPFLGFG--- 754

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                               P    +     +    L +  ++    E  RLLYV +TRA 
Sbjct: 755  -------RSGKDDYLMCHDPEREHRLVLDLSGGDRLREQAERERLAEDLRLLYVALTRAK 807

Query: 660  DQL-----------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
                                        +   W   + +           +L    +   
Sbjct: 808  QLCVWAWGAVNEFQYAAMAWLLYGGATGSLTDWLTSLKNLDDTQLAEPLTRLAAQTDFYW 867

Query: 709  WIAYEW---STHHPENTPLEREETIKQLMDEQKIPKKLFSPIK------NDINEPYILNP 759
              A E         E     R  + ++ +++                  ++         
Sbjct: 868  SPAPEPVHQRHQPGEGAGQWRARSAQRTVEQNWRLSSYSQLAAGGGGRHSEEPLDEAEAT 927

Query: 760  STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
              +  + + ++  +    +    G   H +L+ +    E        +  +     +  +
Sbjct: 928  LEVQPRLQPDVSDIFQFPKGAWAGQCFHHILENMPFQAESAEILHELTSHSLQQHGFGEE 987

Query: 820  EYKNLLLSITRLLENP-----------------------------------MMTTAMSCD 844
                +   + +++  P                                    +   ++  
Sbjct: 988  WVACVAEQLWQVVNTPLRQNGVTPFSLSQLDKANMQVEMEFLFPVTLIQQARLARFLADY 1047

Query: 845  SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK---------THHHVPQEIEH 895
            S SE  V+  +   +   ++ G ID     +   +I +YK         ++       E 
Sbjct: 1048 SGSEAPVNLNVAANEG--LMHGFIDLTFQHEGRFYIADYKGSWLGEKRESYAPDNLRNEI 1105

Query: 896  IPYTHIAQLSIYEKILKD 913
            + + +  Q  IY   L  
Sbjct: 1106 LAHRYDLQYLIYTLALHR 1123


>gi|226952361|ref|ZP_03822825.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
 gi|294649622|ref|ZP_06727039.1| ATP-dependent DNA helicase [Acinetobacter haemolyticus ATCC 19194]
 gi|226836813|gb|EEH69196.1| ATP-dependent DNA helicase [Acinetobacter sp. ATCC 27244]
 gi|292824499|gb|EFF83285.1| ATP-dependent DNA helicase [Acinetobacter haemolyticus ATCC 19194]
          Length = 679

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 210/632 (33%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ I      +T +  +          +L   YE  
Sbjct: 127 RDNMSGAESKELIAKAMKKISDWKNDLILPEQAHSTCETVEDVQ-----LAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQEN---AEVRDKWQNRVRYLLVDEYQDTNTAQYTLVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   K               +I+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLKDDFHN--------LKVIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  +    +   +D 
Sbjct: 281 EQNYRSTSRILKAANAVIENNPHIFDKKLWSDK------------GHGENIRVITCLNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A R+   + ++I    +           KD  +L 
Sbjct: 329 D-----------------------EAERV---VKDLITHKLMNGK------NWKDYAILY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARVLETQLRQMQ----IPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHEL-I 492
           + +P        + K+     E         +             ++      +I     
Sbjct: 413 INTPKRAIGPVTLEKLGLFAQENTLSLLTASSDQRLSMVLPKKAATQLHEFADFIATFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFL----NFTLRNEQNS 543
            +     P      ++           +           D ++       N   R +   
Sbjct: 473 ELLDDDEPVPKVRQMINEAGYIDYVREQAATPAQEKTKIDNIESLYTSIQNLINRTDDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I +L       ++    + ++V ++T+H AKGLE P V+++    ++  HK+ 
Sbjct: 533 EKNIESVIRKLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPYVYMIGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IASETIEEERRLMYVGITRARQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   +D   
Sbjct: 618 LTLAEQRKNGGQMRQMTPSRFLDELPQDDLEW 649


>gi|183981382|ref|YP_001849673.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
 gi|183174708|gb|ACC39818.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
          Length = 1101

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 147/1073 (13%), Positives = 308/1073 (28%), Gaps = 186/1073 (17%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +++R       +  +   +    P   VS  + +    +      +L      +  S+T+
Sbjct: 83   VRSRLARLAGTTVGVAVGEAAGAP--TVSTYHAFAGSLLRDHGL-LLPIEPDTRLLSETE 139

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK---------SQDEFIKIR 111
              +  F +++ +            +T  + +    L E L             +  +   
Sbjct: 140  LWQLAFEVVNGYRGELCTQKTPAAVTATVLRLWGQLAEHLVDTRQLRDTHIELERLVHAL 199

Query: 112  DRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                  +        L +            L     E  +   V+DF    +      + 
Sbjct: 200  PAGPNQRDSGPNQWLLRMLATQTERAELVPLLDALHERMRAAKVMDFG---MQMAAAARL 256

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                  +  ++      +L+DE QDT   Q   + +L                L AVGD 
Sbjct: 257  AATCPQVGEELRSRYRVVLLDEYQDTGHSQRVALSALFG------GGVDDGLALTAVGDP 310

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
             QSIY + GA    + R        A + G    ++EL  S+R+    L + + + +   
Sbjct: 311  IQSIYGWRGASATNLPRFSTDF---ALSDGAPAPVLELRTSWRNPPRALHLANAISAEAR 367

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                    +   +R R           L   V ++ D                       
Sbjct: 368  RRS----VAVHALRSRPDAPAGTVRCALLADVQAERD----------------------- 400

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                      I++ +      +      +      VLVR+  D   I            I
Sbjct: 401  ---------WIADQLQGHYQRAAAD--GVSPPTAAVLVRRNADAAPIADALVA----RGI 445

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-- 460
             V       L     + DL+A+ R +       + + +L  P +     D+  +  +   
Sbjct: 446  PVEVVGLAGLLSIPEVADLVAMLRLVGDPTAGAAAMRVLTGPRWRLGGSDVAALWRRAVA 505

Query: 461  -----------------------HETETVYEYIQK------FANCGISKFQHVIKYIHEL 491
                                    +T  + + I        +++ G  +   +   ++ L
Sbjct: 506  LVGGPQVGASASPGAVAAAAGPDTDTACLADAICDPGPADWYSSAGYERIGALAAELNAL 565

Query: 492  IHIAQFCSPHDFFT--LILGAK-KGRQQFISRFGNEVIDVLDEFLNFTLRNEQ------- 541
                    P        +LG     R    +       + LD F +      +       
Sbjct: 566  RGHLGHWLPDLVAEVRRVLGLDCDVRAAATASGAWAGAEHLDAFADVVADYAERAAISAG 625

Query: 542  ---NSYSSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               ++ +S+  L++ L+              +   + V+++TVH AKGLE  VV +    
Sbjct: 626  SALSTKASVDGLLAYLDVAAEVENGLPPAQLTVARDRVQVLTVHAAKGLEWQVVAVAHLS 685

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIP----------------QSKSRNNIVSDLIKH 638
            + VF     +   +       P +                       K  ++ +S   + 
Sbjct: 686  AGVFPSTASRSSWLTDPGELPPLLRGDRASVGALGIPVLDTSAVTNRKQLSDTISAHREQ 745

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-------------V 685
            L +   +E  RLLYVG+TRA D +++  H   +   K    + +                
Sbjct: 746  LDQRRVDEERRLLYVGVTRAEDTVLVSGHHWGATGLKPRGPSDFLCELKDIIERSAAAGD 805

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                 +      +    +   D+ +   W T        + E   + + +       + +
Sbjct: 806  PCGTVDQWDPAPVAGERNPLLDDVVEAVWPTDPLATRRGDVERGARLVAEAISADAGVEA 865

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF------------------NRGLIIH 787
            P             + +D        ++    +                     R  ++H
Sbjct: 866  PAGGAAVADIEGWTADVDALLAERARAVGPPTRALPNQLSVSGLVELARDPVGARQRLVH 925

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT----RLLENPMMTTAMSC 843
            +L       P  +  N   ++  +        +  +L  +      ++ +   +  A + 
Sbjct: 926  RLPTR--PDPHAQLGNAFHTWVQQFYGAELLFDLGDLPGAADSDVGQVEDLAPLQEAFAG 983

Query: 844  D---SYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYT 899
                + + ++V      P  D ++ GRID +         + ++KT    P+  E +   
Sbjct: 984  SPWAARTPIAVEVPFEMPVGDTVVRGRIDAVFEDPDGGATVVDWKTG-EPPRGPEAMRQA 1042

Query: 900  HIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNK-AFAEIST 949
               QL++Y          P  S+     YV       IP    +  A AE+  
Sbjct: 1043 -AVQLAVYRMAWAALRGCPESSVRTAFHYVRTGVTV-IPDELPDGMALAELLA 1093


>gi|260552489|ref|ZP_05825865.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
 gi|260405296|gb|EEW98792.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
          Length = 679

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 215/632 (34%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ I      +T +  +          +L   YE  
Sbjct: 127 RDNLSGAESKELIAKAMKKISDWKNDLILPEQAHSTCETPEDVQ-----FAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQEN---AEVRDKWQNRVRYLLVDEYQDTNTAQYILVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   K+              II+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLKQDFPN--------LHIIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  ++   +  ++D 
Sbjct: 281 EQNYRSTSRILKAANCVIQNNPHIFDKKLWSDK------------GHGEVIRIITCRNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A R+   + +++    +           KD  VL 
Sbjct: 329 D-----------------------EAERV---VKDLLTHKLMNGK------NWKDYAVLY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARVLETQLRQMQ----IPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHEL-I 492
           + +P        + K+    +    ++                  ++      +I     
Sbjct: 413 INTPKRAIGPVTLEKLGLFAQENNLSLLGASSDQRLSMVLPKKAETQLHEFADFIATFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFL----NFTLRNEQNS 543
            + +   P      ++           +           D ++       N   R E   
Sbjct: 473 ELLEDDEPVPKVRQMMNEAGYIDYIREQSATPAQEKSKLDNIENLFTSIQNLINRAEDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I +L       ++    + ++V ++T+H AKGLE P V+++    ++  HK+ 
Sbjct: 533 EKNIESVIRKLVLLDLLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IAAETIEEERRLMYVGITRARQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   ++   
Sbjct: 618 LTLAEQRKNGGQMKQMTPSRFLDELPQDELEW 649


>gi|258620942|ref|ZP_05715976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573]
 gi|258586330|gb|EEW11045.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573]
          Length = 1208

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 129/942 (13%), Positives = 269/942 (28%), Gaps = 139/942 (14%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               +   I + ++   +  L      +       +  KS           +         
Sbjct: 263  ALLRRLPILDAWAQSETHDLHVPSELE-EFTQSGLLAKSKKGNPPQLALFERIEAFLAEP 321

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             + K      A      +L     +AK  +  L F+DL+   +  L   D    +  +I 
Sbjct: 322  VSLKTPLLVHAIHHCRHWLA----KAKSTHHWLSFDDLLTQLSAAL-DNDEQGLLGERIR 376

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                  +IDE QDT  +Q+ +   L           +    L  +GD KQ+IY+F GA+ 
Sbjct: 377  TLYPVAMIDEFQDTDPLQYSIFSRLYLG--------NPQCGLLMIGDPKQAIYAFRGADI 428

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               ++ +       T          L  ++RS+A ++  V++VFS   +    S+D    
Sbjct: 429  FTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSSATHPFIYSDD---- 474

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            I  +          + W        +      E          +    + +A   A  I 
Sbjct: 475  IPFQPVAASPGADKRHWTLEGQVQPALTYWWPEDLDK---QQSKTDYYAQMAEACAAQIQ 531

Query: 355  NMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +++      +    R   I+A D+ VLVR   +  ++      L      SV  ++R  +
Sbjct: 532  HILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSEQGIASVYLSNRDSV 588

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  +D+  L   +   ED+      + S LF  +  ++  +    +E E +    ++
Sbjct: 589  FASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQ 648

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            +        + V+  +  ++               L   +G +             + E 
Sbjct: 649  YRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL------HISEL 694

Query: 533  LNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L    R   +    L+ L   +              +   +    V+I+T+H +KGLE P
Sbjct: 695  LQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYP 754

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL    S                 ++          +        D +    +    E
Sbjct: 755  LVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTGNEDALAKADQERLAE 801

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------------MVY 686
              RLLYV +TRA     I      +        + +                      + 
Sbjct: 802  DLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQEGGIEDLRQALL 861

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                N   V +        +         +        +  +   ++     +  +    
Sbjct: 862  KQCENLPDVAQCAPPERFEQAYQPPQLDESELTARELSQAIDRRWRVTSYSGLVMQSSHA 921

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLIIHKLLQVIFTLP 797
              + + +  +L     D       +    +          +    G  +H L + +    
Sbjct: 922  RHDPLQDIPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQ 981

Query: 798  EHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVS 850
                +           ++   A+    L   +  +L  P       +   M+    +E+ 
Sbjct: 982  SAHSEPNTKIILELMESEQIEAEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELE 1041

Query: 851  VSGKINCPKKDII-------------------------ISGRIDQISISQQNIFIFEYKT 885
                I       +                         + G ID +   Q   ++ ++K+
Sbjct: 1042 FLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQYQGRYYVLDWKS 1101

Query: 886  HHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            +H       + P           +  Q  IY   L     ++
Sbjct: 1102 NHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|262191393|ref|ZP_06049582.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93]
 gi|262032724|gb|EEY51273.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93]
          Length = 1208

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 126/893 (14%), Positives = 261/893 (29%), Gaps = 134/893 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    +      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +I       +IDE QDT  +Q+ +   L  D+            L  +GD K
Sbjct: 366  DEQGLLGDRIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDY--------PQCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVSAHYT----------LGTNWRSSAAMVAAVNQVFSFATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASPGADKRHWTLEGQVQPALTYWWPEDLDKP---QSKTDYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L     
Sbjct: 521  QMAEACAAQIQHILTASASGAAIFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRSAVASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLTESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++          +        D 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTGNEDA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------ 683
            +    +    E  RLLYV +TRA     I      +        + +             
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 684  --------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                     +     N   V +        +                  +  +   ++  
Sbjct: 851  GGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTS 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLII 786
               +  +      + + E  +L     D       +    +          +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +      + +           ++   ++    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAQSEPNTKIILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            Q   ++ ++K++H       + P           +  Q  IY   L     ++
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|319944948|ref|ZP_08019210.1| ATP-dependent helicase PcrA [Lautropia mirabilis ATCC 51599]
 gi|319741518|gb|EFV93943.1| ATP-dependent helicase PcrA [Lautropia mirabilis ATCC 51599]
          Length = 677

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 107/727 (14%), Positives = 227/727 (31%), Gaps = 120/727 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E   +    LP  +   I+ + SL M+    +       L+ +      ++   
Sbjct: 59  AAAEMAERFAQQRK-LPASERPTISTFHSLGMKMLRTSGRGIG--LKPSFSIFDSDDCAG 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL+    T               K       ++   ++  ++        +         
Sbjct: 116 LLAQLLQTTD------------RKLIRLAATRISLWKNAMVEPETALKEARGESELR--- 160

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    Y+   +    +DF+DLI     LL++ + +   R    +++ + L+DE QD
Sbjct: 161 --IARAYMEYQATLEGYQAVDFDDLIRLPLKLLRQDEEA---RRLWQEKLRYFLVDEYQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T++ Q+ +++ L  +             L AVGD+ QSIY + GA  + + R  +     
Sbjct: 216 TNVAQYALLKELVGNRTG----------LTAVGDDDQSIYGWRGASLENLKRLGQDFPN- 264

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I+L  ++RST  IL   + + +        +  S              G 
Sbjct: 265 -------LTVIKLEQNYRSTRTILHAANTLIAKNPKLYTKTLWSAL------------GE 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               + +    D                          A  +   I              
Sbjct: 306 GDPLKVLPCDDDED-----------------------EAETVVKRIQA---------ARF 333

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           ++ ++  D  VL R      +I  + R       I    +      D   IKDL A  R 
Sbjct: 334 EKRLKWSDFAVLYRGNHQARVIEQMLR----KEHIPYQISGGQSFFDRAEIKDLCAYLRL 389

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + + +DD +F+    +P        +  +         ++++ + +       ++  +  
Sbjct: 390 LANDDDDPAFIRAATTPRRGIGPQTLKLLGEYAGERDISLFQAMFEAGVESRLSDRQLHP 449

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFT 536
            +    +I+ L   A+          ++ A   +     +            + EF ++ 
Sbjct: 450 LRVFGDFINRLKWRAEREPASTVLDALISAIDYQAYLSEQGDERSATTRWQYVCEFRDWI 509

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            +   +   +L ++   +        R    + + VR+ TVH +KGLE P VFL+     
Sbjct: 510 GKRADDDGKTLVDMAQHISLVTRLEGRD--EDGDAVRLSTVHASKGLEYPHVFLIGVEEG 567

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +  H   +   +                            + +     EE  RL+YV +T
Sbjct: 568 IMPHAGREDDGLDDVNG------------------SPVDREKIDAERLEEERRLMYVAIT 609

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA   L +         ++         + +     E  + + ++    + +  A     
Sbjct: 610 RARKSLTLSWCRQRKRAREMVDCQPSRFITEMQLEAEGTRNVPVSADEARKKLAALRAML 669

Query: 717 HHPENTP 723
                 P
Sbjct: 670 EQRGAVP 676


>gi|317968538|ref|ZP_07969928.1| UvrD/REP helicase [Synechococcus sp. CB0205]
          Length = 792

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 111/629 (17%), Positives = 212/629 (33%), Gaps = 99/629 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y  A   N  LDF+DL++    LL++ D    +R    +   H+L+DE QD
Sbjct: 202 KLMAETYRRYRRALAANNALDFDDLLLLPVQLLRQND---QVRNYWHRRFRHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++I+ L  D    ++    + R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYDLIKLLVTDGRDPESFDDWAGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
            A +     ++++L  ++RSTA IL   + + +            T              
Sbjct: 319 GAPD-EATQTMVKLEENYRSTATILEAANVLIANNSERIDKVLRPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  + T   D + +       A  + + +  M        + 
Sbjct: 365 ---------------GQGELLTLTRCDDEIAE-------AEAVVHRMRMM--------DA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ VL R    +  +          + I  V        D   IKD++A  +
Sbjct: 395 AHPDLSWGDMAVLYRTNAQSRAMEESL----VRWGIPYVVVGGLRFYDRREIKDMLAYLK 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + +L +P     +  I ++    ++    ++      E ++        
Sbjct: 451 LLVNPADTVSLLRVLNTPKRGIGKTTIERLTDAANQLGIPLWDVVSDPEAVRSLGGRSAK 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + I+ L   +Q  +P +   L +       + I+   +E  D    L+E +N  
Sbjct: 511 GLLQFCELINNLKDRSQEAAPSELVQLAMEKSGYVAELIAAGTDEAEDRRRNLNELVNAA 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N   SL++ ++          +    + + V +MT+H +KGLE PVVFLV    
Sbjct: 571 LQYQEENEEGSLEDFLASAALASDADSKD--TDQDRVTLMTLHASKGLEFPVVFLVGMEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           +  EE  RL YVG+
Sbjct: 629 GLFPS----------------------------------YRSLEDPAAMEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +             I  +           +  
Sbjct: 655 TRAKERLFLSHASERRLWGGMREPAVPSVFLSELPEALVQGDIPRSGGAAIRREQRLDRL 714

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLF 744
           T                 +  +   +   
Sbjct: 715 TRVDRPDAAASSSQPANAVRRRAPARTWS 743


>gi|78776638|ref|YP_392953.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
 gi|78497178|gb|ABB43718.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
          Length = 682

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 114/619 (18%), Positives = 214/619 (34%), Gaps = 132/619 (21%)

Query: 73  FLTQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
           F+      +K II +  ++  +P +  ++ + ++  +   D +   + F           
Sbjct: 109 FVVIDSDDKKRIIKKINSELATPLIASEISRYKNSLLTPDDAYKQAEFFN-----YQQIA 163

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE    +N ++DF+DLI  T  LL +      +      +  +I++DE QDT+  
Sbjct: 164 KIYEEYENYLLENNLVDFDDLIALTFKLLDENPE---LARTTSDKYRYIMVDEYQDTNE- 219

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
                        + +   S+   +  VGD+ QSIY + GA  + ++   +         
Sbjct: 220 ---------LQLKLLQKLCSTHNNICVVGDDDQSIYGWRGAHIRNIMEFDQDF------- 263

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               S+ +L  ++RS   IL V + +     +  G     T                   
Sbjct: 264 -IGTSVFKLEENYRSREPILKVANALIEHNRSRLGKKLIPTR------------------ 304

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  +  +  D   +       AR+IA  ++ ++ +           +
Sbjct: 305 ----------GGGEDITILNSSDENEE-------ARKIATKVNKLLDSG----------V 337

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +A+DI VL R    +  I        N   I+          D   IKDL++  R I + 
Sbjct: 338 KAEDIAVLYRVNVLSRSIEDGL----NRAGIAYKLVGGLRFYDRAEIKDLISYLRVITNF 393

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFANCGIS---------KF 481
            DD SF  ++  P     +  + KI    H  E +++EYI+K A   +            
Sbjct: 394 HDDFSFKRIVNKPKRGMGKASVDKIELAAHANETSIFEYIEKIAITDLETLVKSKNAKTL 453

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRN 539
           +  +K I  + + A+  + ++F   IL      +       +EV     +DEF       
Sbjct: 454 KKFVKDIRSVANAAKEST-YNFID-ILEDTFHLKDIYKGLPDEVERVLNMDEFYGLFRDF 511

Query: 540 EQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +NS  +SL E ++EL               + + +M++H +KGLE   +F++       
Sbjct: 512 IKNSPSASLDEFLNELTLQSE----QDQVEGDSIYMMSIHASKGLEFDHIFIIGLEEGFL 567

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                         EE  RL YV  TRA
Sbjct: 568 PLVGDGS-------------------------------------DLEEERRLGYVSFTRA 590

Query: 659 SDQLIICKHSNTSNEKKSN 677
            D L +    +   + + +
Sbjct: 591 KDTLTLSHVDSRFYKGRRS 609


>gi|330827920|ref|YP_004390872.1| exodeoxyribonuclease V subunit beta [Aeromonas veronii B565]
 gi|328803056|gb|AEB48255.1| Exodeoxyribonuclease V, beta subunit [Aeromonas veronii B565]
          Length = 1199

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 143/1013 (14%), Positives = 288/1013 (28%), Gaps = 162/1013 (15%)

Query: 10   NESYELIYKDLWPLPY---------FQVSDINKYVSLSMETGNPTILKKAQTLQQ----A 56
            +++     + LWP P             S++  + +L  ET           +       
Sbjct: 183  DKTLASSVRALWPSPAALLREMGSWLDNSELEIHPALGDETLAARHQAAMSRIAAVKGEW 242

Query: 57   SQTQCIEERF----------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
                    R                +        Q       I K+     + + +   +
Sbjct: 243  LAQTDEIRRQTDGQISRYTGKNYEGWLAKIADWAQDEGSGYAIPKELERFGQTVLEENLK 302

Query: 107  ---------FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
                          D     +     L     AK + +  + +K++   L F+DL+ + +
Sbjct: 303  KGGAVPTLPLFSQIDELLASRPGIRDLILQRAAKVVRSRMQASKRQAHQLSFDDLLKDLD 362

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
              L    +   +  +I       +IDE QDT   Q+ +   L            +   L 
Sbjct: 363  GAL-GSSLGERLCERIRATYRVAMIDEFQDTDPQQYRIFHRLYGG--------HTDTALL 413

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             +GD KQ+IY F GA+    ++ +R      T          L  ++RS++ ++  V+ +
Sbjct: 414  MIGDPKQAIYGFRGADIFTYIQARRNVSAHYT----------LGRNWRSSSALVGAVNGL 463

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL- 336
            F   ++      D    I              L        D    P    W        
Sbjct: 464  FERAKDPFIYEAD----IPFLPVEAQGKSKALLL-------DGATAPVLHCWQLSGQPTF 512

Query: 337  PQESSASILARRIAYTISNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +    S LAR  A  I  ++       +    + ++A DI VLVR   +  L+      
Sbjct: 513  NKGDYQSKLARATAVEIHRLLTLAREGKAKIGDQAVKAGDIAVLVRTGAEGKLVQQELAR 572

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            L      SV  ++R  + +    ++++ +     +  ++ S    L + LF+     +  
Sbjct: 573  L---AIASVYLSNRESVLEQTEAREILLILHACQNPSEERSLRAALATGLFDLDAKALDG 629

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            + +     E+  +   ++        + V+  +  L+H           + +L +  G +
Sbjct: 630  LASDERAWESAVQEFMEYRKIWHR--RGVLAMLRALLHRRN------LASSLLASPYGER 681

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEV 572
            +  +         L E L          Y+ L+ L   + +             +    V
Sbjct: 682  RLTNFL------HLGELLQQVSSELDGEYALLRWLGEAVSRPNGQDAEQVLRLESERKLV 735

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +I+T+H +KGLE P+VFL           H      +    D+ G      ++       
Sbjct: 736  QIVTIHKSKGLEYPLVFLPFIC------SHRTAETPLYHEADEAGN-----RTILDLTGA 784

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    +    E  RLLYV +TR      +          K       +  +      
Sbjct: 785  EGSLAEADRERLAEDLRLLYVALTRGVYATWLGLAPVRAGAGKSEKTDLHHTAIGYLLQK 844

Query: 692  DERVKKIKLTNSINK-----DEWIAYEWSTHHPENTPLERE---ETIKQLMDEQKIPKKL 743
             E      L  ++ +           E S   P   P E E   E   +           
Sbjct: 845  GEEGDAQTLATALTELAQALPGVAVGEPSLTRPAPLPPEEEQLGEPQVRHFSGSLERDWW 904

Query: 744  FSPI---------------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
             S                  N   +  ++  + +  +      S+ +  +    G ++H 
Sbjct: 905  ISSYSGLAAQGHGHSKGVLANPGFDVEVVAEAAVVHEEDELQPSIFTFPKGARPGTLLHS 964

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTT 839
            L + I                      +       L   +  +L+ P          +  
Sbjct: 965  LFETIDFQSAGGEPLAEHVATLLAQDGFDESWAPVLQQQVEAVLDTPLDTGFGEPVRLRD 1024

Query: 840  AMSCDSYSEVSVSG-------------------------KINCPKKDIIISGRIDQISIS 874
                    E+                              ++      ++ G ID +   
Sbjct: 1025 LAPERKQVELEFFLPMGRVTAPALTALCQQHDPLSRGNKPLSFATVQGMLKGFIDLVFEW 1084

Query: 875  QQNIFIFEYKTHH---------HVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            Q   ++ +YK++H             E     + +  Q  +Y   L      +
Sbjct: 1085 QGRWYLLDYKSNHLGMSPADYSRPALERAMAEHRYDLQYQLYSLALHRLLTLR 1137


>gi|330427295|gb|AEC18629.1| putative nuclease/helicase [Pusillimonas sp. T7-7]
          Length = 1119

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 142/973 (14%), Positives = 282/973 (28%), Gaps = 136/973 (13%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKK-----AQTLQQASQTQ-----CIEE 64
             I  DL  L     +   + ++ S+ T    +         + LQ               
Sbjct: 216  AIEADLVALARAMPAGWAQALAPSVSTAANILAASQNTLGLEALQHWKGEAFSTDISSLP 275

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST- 123
            ++  L++  LT K T ++ +  +E  +     K+   +  +   +  D        +   
Sbjct: 276  QWQALANMLLTGKNTLRRRVTIKEGFEAKAVYKDDFLRWLNAASESEDWVAMLAGIRLAP 335

Query: 124  ----------------LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                             A    A  LN  +     +   +DF ++       L   D   
Sbjct: 336  REGYTDEQHEVLRLLIEALWLAAAQLNLRF----TEAAEVDFTEISQRALLALGHADEPT 391

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             +   +D  I HILIDE QDTS  Q +++  LT  +  G       RTLF VGD  QSIY
Sbjct: 392  DLLLALDTAIRHILIDEFQDTSQSQIDLLERLTSGWQQGDG-----RTLFLVGDPMQSIY 446

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F  A+    L+ K              + +EL  +FRS A+++  V+            
Sbjct: 447  RFRKADVGCFLKVKEQ-----GLGDITLTALELTDNFRSQANLVDWVNA----------- 490

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
               +   +  + +  G    +       +      + +        +       + + A 
Sbjct: 491  ---TCGPVFPKENHGGLGAIIYTPSVPFNDGLDGISAEYHPVWLRKEDADDTGDSVLEAE 547

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
             IA  ++             K       + +LVR R     I            I     
Sbjct: 548  SIAIKLAK--------EALLKYPDSEHPVAILVRARTHLDGIVHRL----AQQNIPCRAV 595

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-----HE 462
            +   L     + DL  L R +    D L+++ +L+SPL   + + +  +           
Sbjct: 596  ELVSLRSRQVVIDLAQLARALSHDGDRLAWLSVLRSPLCGLTLNSLHALLGADLTTTVPA 655

Query: 463  TETVYEYIQKFANCGIS-----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
              T +    +    GI      + +H    + +  + +       +      A  G   +
Sbjct: 656  LLTAWLARDEAGQPGIEDDEARRLRHAASVLLDTGNTSGAMPFAAWLETRWQALGGADIY 715

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                     + L   +         +  +L++ +++L           S++   V +MT+
Sbjct: 716  HGASDRNDAERLLRLIEELAPYGGLNPVALEDRLAKLYAA-------PSSSGRAVEVMTI 768

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE   V L     +  +      M            PI    S   + + + L +
Sbjct: 769  HKSKGLEFESVILAGLHKRPRA-DTAPLMRFEMGGGQLLLGPIKHKASDEHDPVSTYLAE 827

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              KK    E +RLLYV +TRA  QL +       ++ +        ++   +        
Sbjct: 828  REKKRAAYETDRLLYVALTRARQQLHLIGVVGLDDKMQIKPPAGSSLLGRLWE------- 880

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
                                H +   +     +                ++   +    +
Sbjct: 881  --------------------HIKTPDVPEASELGSDAGLTATASGGRLLVRMTPDSLPKV 920

Query: 758  NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--------FITSYC 809
              S       T  +           G + H  L+ +                        
Sbjct: 921  PASVAAVGTGTPWQWRPGSGDESVIGTVAHAWLERLGKEGMAAWPTQRLDQTLPVFRKQL 980

Query: 810  TKNAKLWPAKEYKN--LLLSITRLLENPMMTTAMS-CDSYSEVSVSGKINCPKKDIIISG 866
             +      A +     L  ++   +E+      +    ++ E S    +      + +  
Sbjct: 981  ARAGLAEHALDASAQVLRDTLVATVESERGAWLLGVARAHREWS----LLDLSGRVSV-- 1034

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQE-----IEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
             ID     + +  + +YKT      E        +   +  Q+  Y   +      +   
Sbjct: 1035 -IDLAISQEHDWLVVDYKTGVPQEGETPDGFAARMRERYREQIERYCAHVSALD-GRPAR 1092

Query: 922  CLLIYVSEPKVFI 934
              L +        
Sbjct: 1093 GALYFPRADIWIE 1105


>gi|329938133|ref|ZP_08287584.1| ATP-dependent DNA helicase II [Streptomyces griseoaurantiacus M045]
 gi|329302622|gb|EGG46512.1| ATP-dependent DNA helicase II [Streptomyces griseoaurantiacus M045]
          Length = 901

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 111/787 (14%), Positives = 229/787 (29%), Gaps = 115/787 (14%)

Query: 8   SLNESYELIYKDLWPLPYFQVS-DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + + P  +       +      +   +  +         +       +  
Sbjct: 140 AAGEMKERVEQLVGPRAHAMWVMTFHSACVRILRRESKRL-----GFTSSFSIYDAADSK 194

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L++         P K    +  + K  +LK +L   +D              F+ T   
Sbjct: 195 RLMALVCRDLDLDP-KRFPPKSFSAKISNLKNELIDEED------FAAQAADGFEKT--- 244

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   A Y+   ++   LDF+DLI+ T +LL+       +     +   H+L+DE Q
Sbjct: 245 ---VAQAYALYQSRLREANALDFDDLIMTTVNLLR---AFPDVAEHYRRRFRHVLVDEYQ 298

Query: 187 DTSLIQWEVIRSLTEDFFVGKN----THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DT+  Q+ ++R L        +        P  L  VGD  QSIY+F GA  + +L+ + 
Sbjct: 299 DTNHAQYALVRELVGTSEHPVDVPPEAQVPPAELCVVGDADQSIYAFRGATIRNILQFEE 358

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                        + I L  ++RST  IL+  + V    E+ +  +              
Sbjct: 359 DYP--------DATTILLEQNYRSTQTILSAANAVIERNESRRPKN-------------- 396

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  LW        +  +  Q +         +       A+ +A  I  +      
Sbjct: 397 -------LW-------TNAGSGAQITGYVADTEHDE-------AQFVAEEIDRLTDAGE- 434

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    +A D+ V  R    + +   +         +           +   ++D++
Sbjct: 435 --------AKAGDVAVFYRTNAQSRVFEEVF----IRVGLPYKVVGGVRFYERKEVRDVL 482

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK--FANCGIS 479
           A  R + + ED +    +L  P     E     I    + E  +  + +++   A    +
Sbjct: 483 AYLRVLANPEDSVPLRRILNVPKRGIGERAEAMIDALAQRERISFPQALRRVDEAYGMAA 542

Query: 480 KFQHVIKYIHELIHIAQF-----CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
           +  + +K  + L+   +        P      IL       +  +    +    I+ L E
Sbjct: 543 RSANAVKRFNVLMEELRTVVESGAGPATVLEAILERTGYLAELQASTDPQDETRIENLQE 602

Query: 532 FLNFTLRNEQNS-------------------YSSLQELISELEQYPPTIKRAHSANHNEV 572
                L  EQ                      +      +  E        A        
Sbjct: 603 LAAVALEFEQERGGAAGAGDGTGAVTPDAAAPADAATAGTGAEGTEAEGADAAVTTGAAA 662

Query: 573 RIMTVHTAKGLES-PVVFLVDTGSQVFSHKHIKK--MHIMPSLNDDPGIPIWIPQSKSRN 629
                      E    V LV    Q+   +      + +M            +  +   +
Sbjct: 663 GAAAATGGTLAEFLERVALVADSDQIPDEEEDGSGVITLMTLHTAKGLEFPVVFLTGMED 722

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
            +   +    +    EE  RL YVG+TRA ++L + + +  S   + +       + +  
Sbjct: 723 GVFPHMRALGQTKELEEERRLAYVGITRARERLYLTRAALRSAWGQPSYNPPSRFLEEIP 782

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
               + K+     +                 ++ L       +            +    
Sbjct: 783 EQHVQWKRTGSAGAPAAGGRPGRGSGVAASLSSSLSSSFPASRSRSSAAGAAGFATGRGG 842

Query: 750 DINEPYI 756
             + P +
Sbjct: 843 AGDRPAV 849


>gi|148241321|ref|YP_001226478.1| UvrD/REP helicase [Synechococcus sp. RCC307]
 gi|147849631|emb|CAK27125.1| UvrD/REP helicase [Synechococcus sp. RCC307]
          Length = 784

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 103/620 (16%), Positives = 199/620 (32%), Gaps = 99/620 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y +A   N      D        ++    +  +R    +   H+L+DE QD
Sbjct: 202 KLTADVYRRYRKALAANNA---LDFDDLLLLPVQLLQQNEQVRSYWHRRFRHVLVDEYQD 258

Query: 188 TSLIQWEVIRSL-TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++I+ L T           + R++F VGD  QSIYSF  A+   ++  ++    
Sbjct: 259 TNRTQYDLIKLLVTGGQDPQLYNEWNGRSVFVVGDADQSIYSFRAADFTILMGFQQDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +A +   + ++++L  ++RSTA IL   + + +            T              
Sbjct: 319 QAADDATR-TMVKLEENYRSTATILEAANALIANNSERIDKVLRPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  S T   D + +       A  + + +  +        + 
Sbjct: 365 ---------------GEGELISLTRCDDEIAE-------AEAVVHRMRML--------DA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +    + VL R    +  I          ++I  V        D   IKD++A  R
Sbjct: 395 AHPELSWGSMAVLYRTNAQSRAIEESL----VRWRIPYVVVGGLRFYDRREIKDVLAYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-------TVYEYIQKFANCGIS 479
            +++  D +S + ++  P     +  I ++    ++         +  E ++        
Sbjct: 451 LLINPADSVSLLRVINVPRRGIGKTTIQRLNDAANQLAIPLWDVVSDGEAVRSLGGRSAK 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + I+ L   AQ   P +    +L      ++ I+   +E  +    L E +N  
Sbjct: 511 GLLQFCELINGLREQAQVAPPSELIQQVLEKSGYLRELITEATDEAEERRRNLQELVNAA 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N    L+  ++          +      + V +MT+H++KGLE PVV LV    
Sbjct: 571 LQYQEENEEGDLEGFLASAALASDADSKD--TAADRVTLMTLHSSKGLEFPVVCLVGLEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +             I  +           E  
Sbjct: 655 TRAKERLFLSHASERRLWGGMREPAVPSIFLAELPEALVQGDIPRSGGAALRREQRLERL 714

Query: 716 THHPENTPLEREETIKQLMD 735
           T         +         
Sbjct: 715 TRVDRAEAQPKARVSAARSW 734


>gi|327484827|gb|AEA79234.1| Exodeoxyribonuclease V beta chain RecB [Vibrio cholerae LMA3894-4]
          Length = 1208

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 123/893 (13%), Positives = 258/893 (28%), Gaps = 134/893 (15%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q    +  + F    +   T   +    +      +AK  +  L F+DL+   +  L   
Sbjct: 307  QLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLSAAL-DN 365

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            D    +  +        +IDE QDT  +Q+ +   L   +            L  +GD K
Sbjct: 366  DEQGLLGERRTTLYPVAMIDEFQDTDPLQYSIFSRLYLGY--------PQCGLLMIGDPK 417

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS+A ++  V++VFS   +
Sbjct: 418  QAIYAFRGADIFTYIKARNQVNAHYT----------LGTNWRSSAAMVAAVNQVFSSATH 467

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                S+D    I  +          + W        +      E          +    +
Sbjct: 468  PFIYSDD----IPFQPVAASPGADKRHWSLEGQVQPALTYWWPEDLDKP---QSKTDYYA 520

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A   A  I +++      +    R   I+A D+ VLVR   +  ++      L     
Sbjct: 521  QMAEACAAQIQHILTASASGAATFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGI 577

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++R  +      +D+  L   +   ED+      + S LF  +  ++  +    +
Sbjct: 578  ASVYLSNRDSVFASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDEN 637

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E E +    +++        + V+  +  ++               L   +G +      
Sbjct: 638  EWEQLIAEFRQYRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL 689

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIM 575
                   + E L    R   +    L+ L   +              +   +    V+I+
Sbjct: 690  ------HISELLQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIV 743

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL    S                 ++          +        + 
Sbjct: 744  TIHKSKGLEYPLVFLPFVMS-------------YRESSEGKYYDTESATTWVDLTGNEEA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD------------ 683
            +    +    E  RLLYV +TRA     I      +        + +             
Sbjct: 791  LAKADQERLAEDLRLLYVALTRAVYGCFIGIAPLRNGNSSQEPTSAHRSAMGFLLQDGQE 850

Query: 684  --------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                     +     N   V +        +                  +  +   ++  
Sbjct: 851  GGIADLQQALLKQCENLPDVVQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTS 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLII 786
               +  +      + + E  +L     D       +    +          +    G  +
Sbjct: 911  YSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFL 970

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTT 839
            H L + +        +           ++   ++    L   +  +L  P       +  
Sbjct: 971  HSLFEEVDFQQSAHSEPNTKIILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQ 1030

Query: 840  AMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRIDQISIS 874
             M+    +E+     I       +                         + G ID +   
Sbjct: 1031 IMAAQRLTELEFLLPIEVLDAPTLNRITQRHDPLSAQAGDLGFHAVQGMLKGFIDLVFQY 1090

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            Q   ++ ++K++H       + P           +  Q  IY   L     ++
Sbjct: 1091 QGRYYVLDWKSNHLGDDPAAYHPQRLSGAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|309973857|gb|ADO97058.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae R2846]
          Length = 673

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 118/646 (18%), Positives = 224/646 (34%), Gaps = 127/646 (19%)

Query: 83  NIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +T ++ K+  DL +E +    +    +      + + +   A           Y    
Sbjct: 118 KELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALAR--DAKYQTFAKCYERYATQI 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    LDF+DLI+    L K+ +    +R K   +I ++L+DE QDT+  Q+E+I+ L  
Sbjct: 176 RAYNALDFDDLIMLPTLLFKQNEE---VRAKWQAKIRYLLVDEYQDTNTSQYELIKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                VGD+ QSIYS+ GA P+ ++R +    +         ++I+L 
Sbjct: 233 D----------RACFTVVGDDDQSIYSWRGARPENMVRLRDDFPR--------LNVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  IL   + +    E+       S                              
Sbjct: 275 QNYRSTQRILHCANILIDNNEHVFDKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              + E          +  +  I+A  IA+                 R  + KD  +L R
Sbjct: 305 TIGEGEKLLIIEAKNEEHEAERIVAELIAHR--------------FSRKTKYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++Q+DD +F+ ++
Sbjct: 351 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQDDDAAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+    + +  +++E I +F              Q   ++I EL   
Sbjct: 407 NTPKREIGTATLQKLGELAQEKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDE 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRN----EQNSYS 545
            Q   P      +L A    +       +          +    ++        E N   
Sbjct: 467 IQRSEPERAVRSMLSAIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEPM 526

Query: 546 SLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           +L ++++ L       +       + ++V++MT+H +KGLE P V+L+     +  H+  
Sbjct: 527 NLNQVVTRLTLRDMLERGEGEDDDDSDQVQLMTLHASKGLEFPYVYLIGMEEGILPHQTS 586

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                +   EE  RL YVG+TRA  +L 
Sbjct: 587 ID-----------------------------------EDNVEEERRLAYVGITRAQKELT 611

Query: 664 --ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             +C+      E    + + +     +        K KLT    ++
Sbjct: 612 FSLCRERRQYGELVRPEPSRFLAELPNDDVLWERDKPKLTTEQKQE 657


>gi|89897835|ref|YP_514945.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56]
 gi|89331207|dbj|BAE80800.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56]
          Length = 636

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/549 (17%), Positives = 169/549 (30%), Gaps = 116/549 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++  K+   LDF+DL+  T  L K       ++ +  +    +LIDE QDT+  Q
Sbjct: 166 IYKEYQQRLKETNALDFDDLLFLTVKLFKDFPE---VKKEYSELWKALLIDEYQDTNHAQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + + +++              + +FAVGD  QSIYS+ GA    +L  ++   +      
Sbjct: 223 YMMAQTIAG----------KHQNIFAVGDPDQSIYSWRGANIHNILNFEQDYPQ------ 266

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RS  +IL   + +     +    +  S                     
Sbjct: 267 --ARVLRLEENYRSYGNILNAANALIQNNASRLKKNLRSVK------------------- 305

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +   +    D           A  +A  I  +              I 
Sbjct: 306 --------GPGEKIRVFLGKTDKDE--------AEFVASEIYRLHKRS---------NIP 340

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +D  +  R    +              +I               I+D++A  R   ++ 
Sbjct: 341 LRDFCIFYRTNFQSRTFEDAL----LRRRIPYEILGGLSFYKRKEIQDILAFLRMFTAKC 396

Query: 433 DDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISKFQH-----VIK 486
           D ++F   +  P        I   I         + E  +        K        +  
Sbjct: 397 DVVAFDRTVNLPKRGLGPSAISSLIDYALTNNLPILEACRNALETHSVKLSKKQQEGLWS 456

Query: 487 YIHEL--IHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN 542
           Y+     +  A     ++F    +      Q          +    LDE  + T   EQ 
Sbjct: 457 YLSIFQQLERAYTLPLNEFVIATIRITGYLQVLKEDPDTFEDRKSNLDELASKTFEWEQQ 516

Query: 543 SYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +    L+  + +L     T +    A  + V +MT+H  KGLE  + F+V     +F H 
Sbjct: 517 NTEGTLESFLDDLALKSSTDETELIA--DRVNLMTIHNGKGLEFRIAFVVGLEENLFPHA 574

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           + K  +                                     EE  RL YVG+TRA D 
Sbjct: 575 NSKGNY----------------------------------ENLEEERRLCYVGITRAQDL 600

Query: 662 LIICKHSNT 670
           L +      
Sbjct: 601 LYLTAAQTR 609


>gi|309792836|ref|ZP_07687278.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
 gi|308225148|gb|EFO78934.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
          Length = 741

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/693 (15%), Positives = 207/693 (29%), Gaps = 119/693 (17%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +         ++       +          +       Y++  +++  LDF+DL++    
Sbjct: 140 RAMLARISSAKNELVGPAEYARLNRTYLDEIVARCYERYQQLLRQSNALDFDDLLVEMVH 199

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           L ++      +     +   ++L+DE QDT+  Q+ +++ L                LFA
Sbjct: 200 LFEQHPA---VLGHYQRRYAYLLVDEYQDTNRAQYTLVKQLAAQ----------RHNLFA 246

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  QSIY + GA+ + +L+ ++              +I L  ++RST  IL     V 
Sbjct: 247 VGDNDQSIYGWRGADIRNILQFEQDYP--------DAQVILLEQNYRSTQAILDTAQAVI 298

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +                R         GT                           SL +
Sbjct: 299 A---------GGGKQKHRKNLWTDNGSGTKV-------------------------SLHE 324

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  +A  I+ ++ +           +   D  V+ R    +  +         
Sbjct: 325 GYDQDAEASFVADEIARLVASGE---------VSYGDCAVMYRVNAQSRALEEAF----I 371

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-C 457
            + +           D   I+D++A  R   +  D+++   +L  P     E    ++  
Sbjct: 372 QHGLRYQIIGGTRFYDRKEIRDVLAYLRLTANPYDNVALTRVLNWPPRGIGERSEAELTR 431

Query: 458 TQRHETETVYEYIQK-------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                   +Y+ +++       FA    S     +  I +++ +       D F  ++  
Sbjct: 432 WANELGVPLYQALREIEVGTSPFAARARSALLGFLANIDQILTMRNSLPLTDLFDAMMIC 491

Query: 511 KKGRQQFISRFGNE----VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAH 565
            + R+  +  + +E        + E  N           S L   + E+       K   
Sbjct: 492 LEVRETLLKEYDSEEAEDRWRNVQELRNVMNEYNHLPLESQLSTFLEEVALVAEVDK--L 549

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               + V  +T+H AKGLE PVVFLV     +  H                         
Sbjct: 550 EDKADAVTCITLHQAKGLEYPVVFLVGLEEGLLPHSRSLNEREQVEEERR---------- 599

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                                   LLYVGMTRA  +L +C     +   +SN  T    +
Sbjct: 600 ------------------------LLYVGMTRARQRLYLCYAFRRATFGRSNITTRTRFL 635

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
            D         K +   +    +   +   +      P       +              
Sbjct: 636 ADIPKELLAQTKQQRKTTAPPAQSSMFTARSTIAGPPPKTAARPPRPAAPSSPTFAPGQH 695

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                  +  +++   I+   +  ++    + +
Sbjct: 696 VHHPTFGDGVVVSSRLIENDEEVTVKFADKERR 728


>gi|153801076|ref|ZP_01955662.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3]
 gi|124123430|gb|EAY42173.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3]
          Length = 1208

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 127/942 (13%), Positives = 269/942 (28%), Gaps = 139/942 (14%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
               +   I + ++   +  L      +       +  KS           +         
Sbjct: 263  ALLRRLPILDAWAQSETHDLHVPSELE-EFTQSGLLAKSKKGNPPQLALFERIEAFLAEP 321

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             + K      A      +L     +AK  +  L F+DL+   +  L   D    +  +I 
Sbjct: 322  VSLKTPLLVHAIHHCRHWLA----KAKSTHHWLSFDDLLTQLSAAL-DNDEQGLLGERIR 376

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                  +IDE QDT  +Q+ +   L  ++            L  +GD KQ+IY+F GA+ 
Sbjct: 377  TLYPVAMIDEFQDTDPLQYSIFSRLYLEY--------PQCGLLMIGDPKQAIYAFRGADI 428

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               ++ +       T          L  ++RS+A +++ V++VFS   +    S+D    
Sbjct: 429  FTYIKARNQVSAHYT----------LGTNWRSSAAMVSAVNQVFSSSTHPFIYSDD---- 474

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            I  +          + W        +      E          +    + +A   A  I 
Sbjct: 475  IPFQPVAASPDADKRHWTLEGQVQPALTYWWPEDLDKP---QSKTDYYAQMAEACAAQIQ 531

Query: 355  NMIGTDTIFSNGKKR--VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +++      +    R   I+A D+ VLVR   +  ++      L      SV  ++R  +
Sbjct: 532  HILTASASGAAIFHRGEAIEAGDLAVLVRTGNEARMVRD---ALSQQGIASVYLSNRDSV 588

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  +D+  L   +   ED+      + S LF  +  ++  +    +E E +    ++
Sbjct: 589  FASDVAQDIERLLLAVWQPEDERLLRAAVASNLFALTASELDALNNDENEWEQLIAEFRQ 648

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            +        + V+  +  ++               L   +G +             + E 
Sbjct: 649  YRRLWSE--RGVLPMLRAVLTQRH------IAERWLAESEGERWLTDYL------HISEL 694

Query: 533  LNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L    R   +    L+ L   +              +   +    V+I+T+H +KGLE P
Sbjct: 695  LQQATREIDSDQGLLRFLTQAMADAAQGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYP 754

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V L    S                 ++          +        + +    +    E
Sbjct: 755  LVILPFVMS-------------YRESSEGKYYDAESATTWVDLTGNEEALAKADQERLAE 801

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------------MVY 686
              RLLYV +TRA     I      +        + +                      + 
Sbjct: 802  DLRLLYVALTRAVYGCFIGIAPLRNGNSSQESTSAHRSAMGFLLQDGQEGGIADLQQALL 861

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                N   V +        +                  +  +   ++     +  +    
Sbjct: 862  KQCENLPDVAQCPPPKRFEQAYQPPQLDERELTARELSQAIDRRWRVTSYSGLVMQSSHA 921

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSD---------NQTFNRGLIIHKLLQVIFTLP 797
              + + E  +L     D       +    +          +    G  +H L + +    
Sbjct: 922  RHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNFPRGARPGTFLHSLFEEVDFQQ 981

Query: 798  EHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVS 850
                +           ++   ++    L   +  +L  P       +   M+    +E+ 
Sbjct: 982  SAHSEPNTKIILDLMESEQIESEWLPVLQHLVDTVLSTPLDGKALRLQQIMAAQRLTELE 1041

Query: 851  VSGKINCPKKDII-------------------------ISGRIDQISISQQNIFIFEYKT 885
                I       +                         + G ID +   Q   ++ ++K+
Sbjct: 1042 FLLPIEVLDAPTLNRITQRHDPLSAHAGDLGFHSVQGMLKGFIDLVFQYQGRYYVLDWKS 1101

Query: 886  HHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            +H       + P           +  Q  IY   L     ++
Sbjct: 1102 NHLGDDPAAYHPQRLGSAMADHRYDLQYQIYALALHRFLRSR 1143


>gi|255020260|ref|ZP_05292329.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus ATCC
           51756]
 gi|254970402|gb|EET27895.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus ATCC
           51756]
          Length = 729

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 114/771 (14%), Positives = 231/771 (29%), Gaps = 151/771 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LI +    L                     ++ ++   L Q          
Sbjct: 41  GAGSGKTRVLISRIAHLLEEGVRPA-EILAVTFTNKAARSMRERLAALVQVDLAPLWMGT 99

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK- 121
           F  ++   L +         +    + +     ++  L++   +  +   R    ++ + 
Sbjct: 100 FHGIAHRLLRRHAEALGLPADFQVLDSDDSQRLVRRALRELGLDEKQWTPRALAAQIGRW 159

Query: 122 ------------STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                         +   T+   +   YE  K++  ++DF DL++    L  +      I
Sbjct: 160 KDEGWTPAQVPAREVGRWTIPVQVYERYERIKERGGLVDFADLLLYALRLWDQDG----I 215

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   H+L+DE QDT+ +Q+  +R L                LF VGD+ QSIY++
Sbjct: 216 LEHYRERFQHVLVDEFQDTNAVQYTWLRRLAA-----------HGRLFVVGDDDQSIYAW 264

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + +LR                +++ L  ++RS+A IL   + V +      G + 
Sbjct: 265 RGARVENLLRFAEDFP--------GAALVRLEQNYRSSAPILAAANAVIAHNAERLGKTL 316

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                                         +Q   +     + ++   +       AR +
Sbjct: 317 W----------------------------TAQDGGEPLELYAAYNEEDE-------ARFV 341

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I   +              + +D  +L R    + +   +         +       
Sbjct: 342 VAQIQQWVAQGG----------RREDCAILYRSNAQSRVFEEIL----VREGVPYRVYGG 387

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IKD++A  R   ++ DD SF  ++  P        + ++    R +  ++++
Sbjct: 388 LRFFERAEIKDVLAYLRLCRNRHDDASFERVVNLPTRGIGNVTLERLRLQAREQGLSLWQ 447

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVI 526
              + A     K    +  +  L               ++     R  +          +
Sbjct: 448 AAGQAA---SPKLNAFLTLVDGLAAEIAGDELDAAVQRVIEVTGLRDWYARDGDRNEGRL 504

Query: 527 DVLDEFLNFTLRN----EQNSYSSL-----QELISELEQYPPTI-KRAHSANHNEVRIMT 576
           + LDE +N         E+ +   L       L   L        + A  A  + V++M+
Sbjct: 505 ENLDELINAARAYAFVEEREALRELNPDPGNRLSEFLTHAALEAGEGASDAWEDAVQLMS 564

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE PVVFLV     +F H+                                   
Sbjct: 565 LHSAKGLEFPVVFLVGLEEGLFPHQRSL-------------------------------- 592

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                    E  RL YVGMTRA  +L++C   +               +           
Sbjct: 593 --EDADGLAEERRLCYVGMTRAMRRLVLCYAESRRLHGSERASLPSRFLR---------- 640

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
              L + + ++                L   +          +  ++  P+
Sbjct: 641 --DLPSDLVRELRPRARIRRPVVPTATLSPRQGSAARDLPYPLGSRIRHPV 689


>gi|197105764|ref|YP_002131141.1| DNA helicase II [Phenylobacterium zucineum HLK1]
 gi|196479184|gb|ACG78712.1| DNA helicase II [Phenylobacterium zucineum HLK1]
          Length = 774

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 114/776 (14%), Positives = 219/776 (28%), Gaps = 139/776 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQV--SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  E  E I   + P           +   +  +      +        +++ T   ++ 
Sbjct: 86  AAREMRERISHMIGPAAEGLRWLGTFHSVAAQILRRHAELVG------LKSNYTILDDDD 139

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
              L    L  +    K    + +      L +  K       ++              A
Sbjct: 140 QERLIKQILEAENIDAKRWTPKALA----GLIDHWKNRGWRPDQLPPAEAQAFANGRGQA 195

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              L       Y+E  +     DF DL+++   +   +     +         ++L+DE 
Sbjct: 196 LYRL-------YQERLRVLNACDFGDLLLHNITIFTSQPD---VLADYHARFRYLLVDEY 245

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT++ Q+  +R L +            + L  VGD+ QSIY + GAE   +LR +R   
Sbjct: 246 QDTNVAQYLWLRLLAQ----------KSQNLCCVGDDDQSIYGWRGAEVDNILRFERDFP 295

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      ++ L  ++RST+ IL     + +  ++  G +                 
Sbjct: 296 --------GAKVVRLERNYRSTSHILAAASGLIAANKSRLGKT----------------- 330

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW             ++      +D   +        R IA  I            
Sbjct: 331 ----LW-------TEAEGGEKVIVRGVWDGEAES-------RLIADEIERAKRAGR---- 368

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 + +DI +LVR              L+    I           +   I+D  A  
Sbjct: 369 ------RYRDIAILVRASFQMRAFEERFVLLQ----IPYTVVGGPRFFERAEIRDAHAYL 418

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGI 478
           R I S++DDL+F  ++ +P     +  + K+    R    +     +      + A    
Sbjct: 419 RLIQSEDDDLAFERIVNTPKRGIGDTTVQKLLQVARLNGVSATRAARQIVLTDELAARTR 478

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNF 535
           +   + ++ +      AQ  +       +L                     + L E +  
Sbjct: 479 TSLANFLRDLDRWRAEAQHVAHPRLMEAVLEESGYTDALRLDKSPTAQTRLENLKELVQS 538

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +         L + LE     +        + V+IMT+H+AKGLE P+VFL     
Sbjct: 539 MGNFDT--------LQAYLEHVSLVMDLDRGPAADAVQIMTLHSAKGLEFPLVFLPGWEE 590

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            VF  +          L ++                                 RL YVG+
Sbjct: 591 GVFPSQRSMDEKGEKGLEEE--------------------------------RRLAYVGI 618

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++  I   +N     +   +     V +    +                       
Sbjct: 619 TRAREEARISFAANRQVYGRWTSQLPSRFVDELPLANVEASSETGYYGGGPGMQQHGSRW 678

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
              P           ++                 + +   ++  S   +       
Sbjct: 679 DESPSFGAGYSSPGWRRAQASNYRGSHPGRQQVIEGDGRLVVTGSEAKSDYSRGDR 734


>gi|165975735|ref|YP_001651328.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|165875836|gb|ABY68884.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 672

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 108/675 (16%), Positives = 222/675 (32%), Gaps = 131/675 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +    +     F       L +   P+     +++ K    L   +   +++   +    
Sbjct: 97  KLLGFKSGMTLFDEHDQLALLKHLLPENAAEDKDLLKA---LISTISNWKNDL--LSPEM 151

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              ++         +  +    Y+   K    +DF+DLI+    L ++   +     +  
Sbjct: 152 VLTRVRDERE---RVFSHFYQLYQNQLKAYNAIDFDDLIMLPVLLFRQFPEAKT---RWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q++ ++L+DE QDT+  Q+E+I+ L  +                VGD+ QSIYS+ GA P
Sbjct: 206 QKVRYLLVDEYQDTNTSQYELIKLLVGN----------EANFTVVGDDDQSIYSWRGARP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + + R +               +I+L  ++RS+  IL   + +    ++       S   
Sbjct: 256 ENMQRLREDF---------DLKVIKLEQNYRSSQRILHCANILIDNNDHIFQKRLFSNLG 306

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              + +                                   + +  +    A RI     
Sbjct: 307 EGEKLN-----------------------------------VIEAKNEEHEAERIV---- 327

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                  + ++      + KD  +L R    + L+      L    +I    +       
Sbjct: 328 -----GELIAHRFSNKTKYKDYAILYRGNHQSRLLEK----LLMQNRIPYKISGGTSFFA 378

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY---- 469
              IKD+MA  R +++Q+DD +F+ ++ +P        + K+      +  +++E     
Sbjct: 379 RAEIKDMMAYLRLVVNQDDDAAFLRIVNTPKREIGAVTLEKLGLLANEKQVSLFEAIFDF 438

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFG 522
             IQ+         Q   ++I E+   A+   P      +L   +            +  
Sbjct: 439 ELIQRLTPKPYQALQDFARWIVEIADQAERSDPIQAVKDLLAKIQYEAYLYETAVSPKAA 498

Query: 523 NEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 +     +        E     +L ++++ L       +       ++V++MT+H
Sbjct: 499 EMQSRNVQTLFEWVQGMLEGDEIEEPMTLVQVVNRLTLRDMLERGEDDDEADQVQLMTLH 558

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P +FLV     +  H+                                     
Sbjct: 559 ASKGLEFPHIFLVGMEEGILPHQTSLD--------------------------------- 585

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +   EE  RL YVG+TRA   L   +CK      E    + + + +           +
Sbjct: 586 --EDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKPEPSRFLLELPQDDLVWESE 643

Query: 697 KIKLTNSINKDEWIA 711
           K K+T     ++  A
Sbjct: 644 KPKMTEEQKVEKTSA 658


>gi|110834680|ref|YP_693539.1| exodeoxyribonuclease V subunit beta [Alcanivorax borkumensis SK2]
 gi|110647791|emb|CAL17267.1| Exodeoxyribonuclease V beta chain [Alcanivorax borkumensis SK2]
          Length = 1206

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/910 (13%), Positives = 262/910 (28%), Gaps = 144/910 (15%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
             KF+ +   +T+   +  P           +   + +          T      A +++ 
Sbjct: 295  AKFSHEGMKLTKAGQEHRPSF-----AFCQQLDAVME-GRANSALPRTELLTHAAAWIDQ 348

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
              ++ +++   + F+D++   +D LK       +   I  +    LIDE QDT   Q+ +
Sbjct: 349  RVDQVRRQTATMGFDDMLSRLHDALKG-GNGERLAQVIRDQFPVALIDEFQDTDPTQYGI 407

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
              +L E+              F +GD KQ+IY+F GA+    L+ ++           + 
Sbjct: 408  FSALYEEQQSTG--------WFMIGDPKQAIYAFRGADVFTYLKARQA---------TEG 450

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +   L  +FRS+  ++  V+ +F   ++  G        I   + +      V L     
Sbjct: 451  NHYTLDTNFRSSRTMVKAVNHLFHYSQSTFGDVFMMDNAIPFNAVKANGRKDVLLI---- 506

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-----KKRV 370
                ++ +            +         A R A  I++++        G       R 
Sbjct: 507  --DKTEQSGITLWVDDKEKPVSAGQYRDEQAARCASEITHLLNGAVNGVTGFQKGDTFRP 564

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +   DI +LVR R +   I      L      SV  +D+  +       DL+ +     +
Sbjct: 565  LHPNDIAILVRDRTEAKAIRD---ALMQRNVRSVYLSDQDSVFAQPEAHDLLLILHACAA 621

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             E D      L   + + +  ++  +                       +++  ++  H 
Sbjct: 622  PESDTRVRSALACAVLDLAYAELDALNQD------------------EVRWEETVEQFHG 663

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSS 546
                 Q          +L       +       E        L E L           S 
Sbjct: 664  YRQQWQNQGVLPMLRSLLMDFHVPARLSQNLDGERALTNLLHLAELLQQAATQLDGEQSL 723

Query: 547  LQELISELEQ-------YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++ L   +E                  ++++ V+++T+H +KGLE P+V+L    S   +
Sbjct: 724  IRYLEDTVESTVEAGRGSSKESILRLESDNDRVKVITIHKSKGLEYPLVYLPFICSFRPA 783

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             K+   +    + +                     +          E  RLLYV +TRA 
Sbjct: 784  DKNKPPLRYHENDHL-----------NVSLEPDDTIQGKADHERLAEDMRLLYVALTRAC 832

Query: 660  DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             +  L +  +     ++   +++    +              L    N    I     ++
Sbjct: 833  HRCTLGLAPYIKGRGKQNQLEKSAIGRLLFGNGVANDGLSAALAPVANDAVNIIKAPHSN 892

Query: 718  HPENTPLEREETIKQLMDEQK--IPKKLFSPIKNDINEPYILNPSTI--DTKGKTNLESL 773
                 P  + +T++  +            +           L P+    D   +   E  
Sbjct: 893  TESYQPQAQSQTLRPPLIPAPRQRQPWWIASYSALKQVQETLAPADPRGDQLAEQQDEQP 952

Query: 774  LSD-----------NQTFNRGLIIHKLLQVIFTL-------PEHKRKNFITSYCTKNAKL 815
             +D            +    G ++H +L+                 +  +          
Sbjct: 953  AADVEPLADTIHAFPRGAAPGTLLHDVLEQAANQRFQQTLADPMDFETSVEEKLQARGWQ 1012

Query: 816  WPAKEYKNLLLSITRL----------LEN-----PMMTTAMSCD---------------- 844
                  ++                  L+      P +                       
Sbjct: 1013 DYTDVIRHWWKQAVTTALPLSEGTVSLDTLHTYVPELEFLFPAHRVNVADMDTLIRQHVH 1072

Query: 845  --SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE---------I 893
                +      K+     + ++ G ID +   +   ++ +YK++     +          
Sbjct: 1073 PQHIAPHYPRPKLEADTLNGMLKGFIDLVFEHEGKYYVLDYKSNWLGVDDSAYTLDAMTA 1132

Query: 894  EHIPYTHIAQ 903
              +   +  Q
Sbjct: 1133 AVLEKRYEVQ 1142


>gi|269926936|ref|YP_003323559.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790596|gb|ACZ42737.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798]
          Length = 779

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 102/623 (16%), Positives = 194/623 (31%), Gaps = 132/623 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A  +   Y++  + N  +DF+DL++    L K       I  +      ++L+DE QD
Sbjct: 179 EIAARVYRRYQQLLEINQAVDFDDLLMKVVLLWKSYPD---ILQQYRDRWQYVLVDEYQD 235

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +I  LT++           R +F VGDE Q IYS+  A+ + +L  +R     
Sbjct: 236 TNRAQYMLINLLTQE----------HRNIFVVGDEDQGIYSWRAADIRNILNFERDYP-- 283

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  +I L  ++RS  +IL V   + S     +                      
Sbjct: 284 ------EAKVILLEQNYRSYQEILDVASHIISSNRLRRPKK------------------- 318

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW        ++           +D   +       A  IA  IS +           
Sbjct: 319 --LW-------TNKSGGALVRVREAYDEQDE-------ASYIAREISRLTSLGE------ 356

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  V+ R    +  +        + Y+I           +   +KD++A  R 
Sbjct: 357 ---YTYSDFAVMYRTNSQSRPVEEAF----SRYRIPYQIIGGTRFYERREVKDVLAYLRL 409

Query: 428 ILSQEDDLSFVCML-KSPL-FNFSEDDIFKICT-QRHETETVYEYIQ------------- 471
           I +  D  S   ++  +P      +  +  +         ++++ I+             
Sbjct: 410 IHNPHDAASLRRIIENTPSGRGIGKGTMKTLEDLASRAHISLWDAIEIALGIKSLEEVGA 469

Query: 472 --------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI--SRF 521
                   K  +      + ++  I+EL       +       +L            +  
Sbjct: 470 FLPNLEIPKLQSKAKESLKQLVGLIYELREQRDILTLPHLIDTLLIKSGYASFLSSGAEE 529

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTA 580
             E ++   + ++          S  + L+  L++            N N+V ++T+H A
Sbjct: 530 DLERLENARDLISIAQDYAAIDTS--EALVEFLQEVALQSDVDTMQNNGNQVTLITLHAA 587

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE  VVF++     +  H                                       +
Sbjct: 588 KGLEYKVVFIIGFEEGLLPH----------------------------------ARSMDR 613

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           +S  EE  RL YVG+TRA ++L I    + +    +        + +   +        L
Sbjct: 614 ESDIEEECRLAYVGVTRAMEKLYISYAFHRNVFGATQTNVPSRFLANIPPDLLDGSLPSL 673

Query: 701 TNSINKDEWIAYEWSTHHPENTP 723
                          T      P
Sbjct: 674 GRRGPGRLTSTTSPRTPSGSTYP 696


>gi|88856786|ref|ZP_01131440.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
 gi|88813954|gb|EAR23822.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
          Length = 1086

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 115/905 (12%), Positives = 237/905 (26%), Gaps = 145/905 (16%)

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L   Y + K+   +L+F D +    ++ ++      +          +L+DE QDTS++
Sbjct: 236  DLAVQYAQQKRAQGLLEFSDQVALALEVAERS---QDVVDHYQDRYRVVLLDEYQDTSVV 292

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q  ++  L  +             + AVGD  QSIY + GA    + R  R   + A   
Sbjct: 293  QTRLLARLFGN-----------HPVMAVGDPHQSIYGWRGASAANLARFSRDFTETA--- 338

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                    L  S+R+   +L   + +         +  +S                    
Sbjct: 339  --DAHYFALSTSWRNATSVLDAANVIVQPLSARSPVRVESLGARP--------------- 381

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                           +++            A   AR +A         +    +      
Sbjct: 382  --------EAPAGAVDAYYYEHIDEEARGVAMWFARALAPQ-----AWNHYNPDPDAAAP 428

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +     +L R+R D              ++I         L     I DL++    I   
Sbjct: 429  EPPTAAILFRRRSDMDRFATALGA----HEIPYHVLGIGGLLSTPEIVDLVSALTVIHDP 484

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ--------- 482
                  + +L    ++    D+  +        +     Q  ++    + +         
Sbjct: 485  SAGSELIRLLSGARWSIGTRDLHALADLSRWLLSRSVTQQALSDEVKQRVKDSVAVDDSA 544

Query: 483  ------------------------HVIKYIHELIHIAQFCSPHDFFT-----LILGAKKG 513
                                      +  + +      F              +L  +  
Sbjct: 545  SIVDALDFVGEAPVSHSQLENFSPEGLSRLKDAAKQMAFFRSRAGLELGDLVRLLEQELL 604

Query: 514  R--QQFISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKR---AHSA 567
               +   SR   + +  L  F +        + +++L   +S L +          +  A
Sbjct: 605  LDIEVVASRPQAQGMANLYAFHDELAGFLASDDHANLSSFLSWLRRAAQQDMMGPRSDDA 664

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS-----------HKHIKKMHIMPSLNDDP 616
                V+++T+H +KGLE  +V +                       +       +     
Sbjct: 665  EAGTVQLLTIHASKGLEWDLVAVPRLVDGEVPAASREGKGWVSFGKLPFAFRGDAAELPE 724

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                        +  + +    L    Q E  RL YV +TRA D L++     +S  K  
Sbjct: 725  LEWENAQYQSDFDGSLKEFKAALADRHQAEERRLGYVAITRARDNLLLTGSFWSSRSKPQ 784

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
               T+   + +     E         +   ++ +   W      N     E   + +   
Sbjct: 785  APSTFLQELEERELIGELPSDPVNDENPTLNDVVDPLWPFDPLGNRRATVEAAAQLVTTA 844

Query: 737  QKIPKKLFSPIKNDINEPYILNPST----------------------IDTKGKTNLESLL 774
                  L+S     +        S                                    
Sbjct: 845  DPGADGLWSHEIELLVAERNRAASEGQRTPLPQRIPASRFKDYIADPEAVALSLRRPMPE 904

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
               +    G   H+ ++          +         +            L  +    E 
Sbjct: 905  KPYRATRLGTQFHEWVEA-RFGTSASAETLDALSLEIDGADVDGAADAEKLSQLQATFER 963

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
                      +   V V  +I+ P  D +I  +ID +        I ++KT        +
Sbjct: 964  SAWA------TRKPVDVEIEIHVPFGDRVIICKIDAVYADGDRYEIVDWKTGRAPRDAAD 1017

Query: 895  HIPYTHIAQLSIYEKILKD---SYPNKSLVCLLIYVSEPKVFI----IPQNKLNKAFAEI 947
                    QL++Y           P + +     +V++  V        + +L +A+A  
Sbjct: 1018 --LEAKQLQLALYRLAYAQWKGIAPER-IDAAFYFVADDTVIRPEHIYSETELREAWARS 1074

Query: 948  STKIP 952
                P
Sbjct: 1075 VGAAP 1079


>gi|162147772|ref|YP_001602233.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786349|emb|CAP55931.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
          Length = 743

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 100/551 (18%), Positives = 169/551 (30%), Gaps = 115/551 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + + A Y+    +    DF DL+++  ++L+       +  +  +   +IL+DE QDT+ 
Sbjct: 186 RPIYATYQARLVQLNACDFGDLMLHVTEILRT---RPDVLAQYHRLFRYILVDEYQDTNT 242

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L +           P  +  VGD+ QSIYS+ GAE + +LR +R        
Sbjct: 243 IQYLWLRLLAQ-------REGQPANICCVGDDDQSIYSWRGAEVENILRFERDFP----- 290

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +++ L  ++RSTA IL     + +  +   G +         R  R    G    
Sbjct: 291 ---GAAVVRLERNYRSTAQILGAASGLIAHNDGRLGKT--------LRPGREDASGEKVR 339

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              V    D                          AR +   +  +              
Sbjct: 340 VASVWDSDD-------------------------EARLVGEEVERLRAGGHSL------- 367

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +I +LVR    T         L     +           +   I+D MA  R +  
Sbjct: 368 ---AEIAILVRAGFQTRAFEERLITL----GLPYRVVGGLRFYERSEIRDAMAYMRVLNQ 420

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISKFQH 483
             DDL+F  ++  P        + K      E +                      +   
Sbjct: 421 PADDLAFERIINVPRRGIGAAAMQKFHVAAREGQMPLAAAVMDLIARGALKGRAREQMTA 480

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
           ++  +                  +L        + +    E    +D L E +      E
Sbjct: 481 LMACLARGREALPREGHVVVVETLLEESGYIDMWKADTSPEAPGRLDNLKELVRALADFE 540

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                        LE     ++   +A    + IMT+H AKGLE   VFL      VF  
Sbjct: 541 SLGG--------FLEHVALVMENEENAGAERLSIMTLHGAKGLEFDTVFLPGWEEGVFPS 592

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +       +                                   EE  RL YVG+TRA  
Sbjct: 593 QRTLDEGGL--------------------------------KGLEEERRLAYVGITRARH 620

Query: 661 QLIICKHSNTS 671
           + +I   ++  
Sbjct: 621 RAVISHAASRR 631


>gi|307565702|ref|ZP_07628171.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS 21A-A]
 gi|307345528|gb|EFN90896.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS 21A-A]
          Length = 845

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 108/577 (18%), Positives = 175/577 (30%), Gaps = 123/577 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE   K+   +DF+ +++NT  L +  +    +R K  +   +IL+DE QDT+  Q
Sbjct: 182 IYKAYEARCKQANAMDFDSILVNTYVLFRDNED---VRNKYAKLFEYILVDEYQDTNYAQ 238

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +I  L           +  + +  VGD+ QSIYSF GA    +L  K I         
Sbjct: 239 VAIITQLV----------NIHQHICVVGDDYQSIYSFRGANIDNILNFKNIF-------- 280

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           +     +L  ++RST  I+   + +    E+       S      +              
Sbjct: 281 KDVQTFKLERNYRSTQFIVKAANSLMKHNEHQISKDVYSQEEEGSKLQYKP--------- 331

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                       S    A  +A  +  +                
Sbjct: 332 --------------------------CYSDKEEAIVVAKELQRI---------KHIDNAS 356

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    +       R       I               IKD++A  R I++  
Sbjct: 357 YSDFAILYRTNAQSRTFEDEFR----RQSIPYKIVGGLSFYQRKEIKDIIAYFRLIVNNN 412

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHET-ETVYEYIQKFANC-------GISKFQHV 484
           D+ +F  ++  P     +  I KI     E   ++++ I              +SK    
Sbjct: 413 DEEAFRRIINYPARGIGKTTIEKIIACASENMVSLWQVITNPLQYGLKVNSGTLSKINEF 472

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN-- 539
           I  I+  +        +     I+   K      S    E     + L+EFL+       
Sbjct: 473 ILLINSFVARLTTTDAYLLGKDIVMQSKISNDIYSNSDTESLSKQENLEEFLSAMQEFVD 532

Query: 540 ---EQNSYSS--LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              E+N   +  L + + E+  Y    K    +    V +MT+H AKGLE P VF+V   
Sbjct: 533 TAREENREDNVFLTDYLQEIALYSDNDKTDDDSPK--VTMMTIHAAKGLEYPTVFIVGLE 590

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F                                                   LLYV 
Sbjct: 591 ENIFPSPMSANSRREIEEERR----------------------------------LLYVA 616

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           +TRA    II    N          T    + D   N
Sbjct: 617 ITRAGRHCIITNAKNRFRYGAMQFDTPSRFIKDIDPN 653


>gi|308189989|ref|YP_003922920.1| ATP-dependent DNA helicase [Mycoplasma fermentans JER]
 gi|307624731|gb|ADN69036.1| ATP-dependent DNA helicase [Mycoplasma fermentans JER]
          Length = 723

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/552 (17%), Positives = 175/552 (31%), Gaps = 116/552 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   + + Y +       LDF+DLII   +L       A I     ++ +++L+DE QD
Sbjct: 174 ALVGKIYSKYNQYLTSKKCLDFDDLIIKVKELFDNFPEVAKI---WSKKYSYVLVDEFQD 230

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS IQ+++++ L+ +             L  VGD  Q+IY + GA+   +L   +  +  
Sbjct: 231 TSTIQYDIVKYLSSNAQ-----------LTIVGDPDQTIYGWRGADVNLILDFDKDFKN- 278

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL   +K+    +                         
Sbjct: 279 -------TKTIILNTNYRSTKTILDAANKLIKHNKKRFSKDLI----------------- 314

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       ++       +   F    +       AR +   I+ +           
Sbjct: 315 -----------TNREQGAPIEFIHAFSVEAE-------ARWVVQKINELKKQ-------- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              IQ K+I +  R    +            +  I+    +         +K+ +A  R 
Sbjct: 349 --KIQLKNIAIFYRSNYYSRPFEEEL----INENINHKIFNGQKFFQRTEVKNALAFLRV 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQ---- 482
           I    D +S   ++  P     E  + K+     ++  T+Y Y+ K+             
Sbjct: 403 IYDGSD-VSLNRIINVPNRKIGEVTLKKLQEAANNKKLTLYSYLIKYYKELPVPLNVKNN 461

Query: 483 --HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR 538
               +  I+      +  S        L      +             D + E +   + 
Sbjct: 462 IVKFLNKINLYRQALKSNSISVVLDKFLKEIGYYEHIEEETSLRGTAKDNVAELIRSIVT 521

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            E+ + +  + +   LE               N V +MTVH+AKGLE   +FLV    Q+
Sbjct: 522 WEKKNPN--KSIKEYLESVSLLSAGDEYDNFTNYVTLMTVHSAKGLEFDNIFLVGMSDQI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F +    K +                                     EE  RL YV +TR
Sbjct: 580 FPNYKSLKSNSDD--------------------------------ALEEERRLAYVAITR 607

Query: 658 ASDQLIICKHSN 669
           A ++L I     
Sbjct: 608 ARNRLFISDSRG 619


>gi|297538070|ref|YP_003673839.1| UvrD/REP helicase [Methylotenera sp. 301]
 gi|297257417|gb|ADI29262.1| UvrD/REP helicase [Methylotenera sp. 301]
          Length = 677

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/632 (15%), Positives = 199/632 (31%), Gaps = 121/632 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           K+ L+K+Q +    ++ F      K+T        A  +   Y++  K    +DF+DLI 
Sbjct: 128 KQLLRKTQSQISHWKNGFVNPDQAKATAEEELTHAAAKVYQLYQQTLKAYQAVDFDDLIK 187

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
              +L  + + +     K  +++ ++LIDE QDT+  Q+++++ LT              
Sbjct: 188 LPVELFDEHEAA---LNKWQRKLQYLLIDEYQDTNACQYKLVKMLTG----------VRG 234

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ Q+IY + GA+ + + +      K          +I+L  ++RST  IL   
Sbjct: 235 QFTAVGDDDQAIYGWRGADVENLRQLTEDFSK--------LKVIKLEQNYRSTIRILRGA 286

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + V +                              LW  + +                  
Sbjct: 287 NAVIANNPKLFEKK---------------------LWSDLGTGD--------------LI 311

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +    S    A  +   +           +  +   +  D  +L R      +     R
Sbjct: 312 QVSACMSEEAEAESVIMKLQA---------HKFENRTKFLDYAILYRGNHQARIFEQYLR 362

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
               ++KI    +      D   IKDL++  R + +++DD +F+    +P        + 
Sbjct: 363 ----NHKIPYTISGGQSFFDKAEIKDLISYLRLVANEDDDPAFIRAATTPKKGIGNTTLE 418

Query: 455 KICTQRH-ETETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           ++         +++             N  +    +   YI ++   A      +    +
Sbjct: 419 RLGEFASLHKISLFAAAFEGDFQNDVGNKQLEDLLNFCTYIQKIQECAVRDPAGEVLNDL 478

Query: 508 LGAKKGRQQFISRFGNEVID----VLDEFL-------NFTLRN-EQNSYSSLQELISELE 555
           L   +              +     + +F+         +     +    +L EL   + 
Sbjct: 479 LTTIQYEAFLYDSDEPRAAESKWKNVLDFIGWLTKKGEASTEFGNETDGKNLLELTQMVS 538

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                  R      + V++ T+H AKGLE   VFL+     +  H+    + +       
Sbjct: 539 LMSMLEGRE-DGEPDAVKLSTLHAAKGLEFGHVFLIGVEEGILPHRESIDLGVTDPT--- 594

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                        EE  RL+YVG+TRA   L I          +
Sbjct: 595 ---------------------------KIEEERRLMYVGITRAQKSLNISWCKKRKRAGE 627

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
                    + +   +D R             
Sbjct: 628 MQMCEPSRFIAELPKDDVRHFGNPFNKDAEAS 659


>gi|229494476|ref|ZP_04388239.1| exodeoxyribonuclease V, beta subunit [Rhodococcus erythropolis SK121]
 gi|229318838|gb|EEN84696.1| exodeoxyribonuclease V, beta subunit [Rhodococcus erythropolis SK121]
          Length = 1105

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 138/1016 (13%), Positives = 279/1016 (27%), Gaps = 170/1016 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----ILKKAQTLQQASQTQCI 62
              ++                            + G  T       +    L  A + +  
Sbjct: 82   RSDDDLVAYLATADDEEIGVRRRRLLRALAEFDAGTITTTHSFCQRMLDGLGIAGEREPD 141

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF---IKIRDRFNTYKM 119
                  +             +  ++  +      K+ L  ++        I +     + 
Sbjct: 142  TTFVESVDDLISEVVSDLYLSRYSRTDSSPPFSTKDALAIARSAVGDGQAILEPDGEEET 201

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                      A  L    E  K+   + DF DL+   + +L   +       ++ ++   
Sbjct: 202  APGQRVLFAAAARL--EVERRKRTKGIRDFNDLLTLLHGVLTDPEYGPVACRRVREKFKV 259

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT  +QW+++R                 TL  VGD KQ+IY+F GAE      
Sbjct: 260  VLIDEFQDTDPLQWDILRL----------AFHGHTTLVLVGDPKQAIYAFRGAEV----- 304

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                         Q  +  EL  ++RS   +L  ++ ++                  H+ 
Sbjct: 305  -----LSYLDAVDQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAHPVEASHKK 359

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            SR+     +++         +   P   S       L    +  + A  +A     + G 
Sbjct: 360  SRLFGPVPMRVRHL----PRTGAGPLNRSGFPAVGRLRSRVADDVAADVVAL----LGGD 411

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              +  +G  R ++  D+ VLVR  K   +I      +     +  V      +    +  
Sbjct: 412  ARLAVDGDPRPVEPGDVAVLVRTHKHVAMIRDALDAV----GVPSVLTGGSSVFATPSAT 467

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
              + L + I              SP+F  + +++ K                     G +
Sbjct: 468  QWLWLLQAIEQPHRSDRVRLTALSPIFGRTSEELDK--------------------DGDN 507

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLR 538
                +   +     +         F  I       ++ ++    E     L        R
Sbjct: 508  VVAELAGQLRSYSGLFARVGFAAVFERISAETNLEKRVLAAPSGERDFTDLRHVAQLLGR 567

Query: 539  NEQNSYSSLQELISELEQY--------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    L  L+  L                R   ++   V+I TVH  KGLE P+V++
Sbjct: 568  VATEEAFGLSALVRWLSDRIKDPTSGSATDRSRRLDSDAAAVQIATVHATKGLEFPIVYV 627

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                   FS + +   +    L  DP     +          +      +     E  RL
Sbjct: 628  P------FSWESVGGFNSPTQLLHDPEGRRILDVGGQEGPGYNARKTVAEAEEAGEELRL 681

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------MVYDSFHNDERVK 696
            LYV +TRA  QL++    +    +    R                  +   +        
Sbjct: 682  LYVALTRAQCQLVLWWAPSYGTSRSPLHRLMLGRTPGIAEPARVVKVLDDGTTAARLATW 741

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI--------- 747
                ++ I+ +    +  S  H      +  E      D         +           
Sbjct: 742  PAAASDVISVEPVGPHPPSPVHWSRAAADVTELAAARFDRDLDTLWRRTSYSALTAGAHH 801

Query: 748  ---------KNDINEPYILNPSTIDTKGKTNLESLLSD----NQTFNRGLIIHKLLQVIF 794
                     ++   +    +   + +   + LE+  S           G ++H++L+V+ 
Sbjct: 802  AVTTTGSEVEDPEKDDEPEDSVDLGSITPSPLEAFPSPMNGLPAGAAFGTLVHEVLEVVD 861

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM----MTTAMSCDSYSEVS 850
            T     R           +      + + L  ++  +++ P+    + T    D   E+ 
Sbjct: 862  TAAADLRAELGMRCAEAVSVRAAEVDSEALADALYLVMQTPLGFGTLATIAPKDRLPELD 921

Query: 851  VSGKINCPKKDI----------------------------------------IISGRIDQ 870
                +      +                                         ++G ID 
Sbjct: 922  FELPLAGGDDPVSMSVTLRGVSELLRRHLPADDILASYADYLDRVETSPMRGFLTGSIDA 981

Query: 871  ISISQQ-NIFIFEYKTHHHVPQEI------------EHIPYTHIAQLSIYEKILKD 913
            +      +  I +YKT+     ++            E +   +  Q  +Y   L  
Sbjct: 982  VLRIPGPSFVIVDYKTNRIGRGDLTAANYTRELMATEMMRSHYPLQALLYSVALHR 1037


>gi|319777271|ref|YP_004136922.1| ATP-dependent DNA helicase [Mycoplasma fermentans M64]
 gi|318038346|gb|ADV34545.1| ATP-dependent DNA helicase [Mycoplasma fermentans M64]
          Length = 723

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/552 (17%), Positives = 175/552 (31%), Gaps = 116/552 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   + + Y +       LDF+DLII   +L       A I     ++ +++L+DE QD
Sbjct: 174 ALVGKIYSKYNQYLTSKKCLDFDDLIIKVKELFDNFPEVAKI---WSKKYSYVLVDEFQD 230

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS IQ+++++ L+ +             L  VGD  Q+IY + GA+   +L   +  +  
Sbjct: 231 TSTIQYDIVKYLSSNAQ-----------LTIVGDPDQTIYGWRGADVNLILDFDKDFKN- 278

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL   +K+    +                         
Sbjct: 279 -------TKTIILNTNYRSTKTILDAANKLIKHNKKRFSKDLI----------------- 314

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       ++       +   F    +       AR +   I+ +           
Sbjct: 315 -----------TNREQGTPIEFIHAFSVEAE-------ARWVVQKINELKKQ-------- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              IQ K+I +  R    +            +  I+    +         +K+ +A  R 
Sbjct: 349 --KIQLKNIAIFYRSNYYSRPFEEEL----INENINHKIFNGQKFFQRTEVKNALAFLRV 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQ---- 482
           I    D +S   ++  P     E  + K+     ++  T+Y Y+ K+             
Sbjct: 403 IYDGSD-VSLNRIINVPNRKIGEATLKKLQEAANNKKLTLYSYLIKYYKELPVPLNVKNN 461

Query: 483 --HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR 538
               +  I+      +  S        L      +             D + E +   + 
Sbjct: 462 IVKFLNKINLYRQALKSNSISVVLDKFLKEIGYYEHIEEETSLRGTAKDNVAELIRSIVT 521

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            E+ + +  + +   LE               N V +MTVH+AKGLE   +FLV    Q+
Sbjct: 522 WEKKNPN--KSIKEYLESVSLLSAGDEYDNFTNYVTLMTVHSAKGLEFDNIFLVGMSDQI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F +    K +                                     EE  RL YV +TR
Sbjct: 580 FPNYKSLKSNSDD--------------------------------ALEEERRLAYVAITR 607

Query: 658 ASDQLIICKHSN 669
           A ++L I     
Sbjct: 608 ARNRLFISDSRG 619


>gi|309789677|ref|ZP_07684258.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
 gi|308228413|gb|EFO82060.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
          Length = 641

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 111/609 (18%), Positives = 195/609 (32%), Gaps = 119/609 (19%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS--TLASLTLAKYLNAHYEEAKKKNCVLD 148
            + P +  + ++      + + R  T ++                   Y+ A ++   LD
Sbjct: 129 TERPPMLLEPEEVLRRISRAKSRLLTPRLMARFSPDPVDRFVAGCYRRYQRALEQANALD 188

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F+DLI+ T+ LL +      +   + Q   HIL+DE QDT   Q  +I  LT        
Sbjct: 189 FDDLILVTHRLLTEHHD---LLETLQQRWQHILVDEYQDTDPSQHALIELLTR------P 239

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
            H  PR+LF VGD  QSIY F  A+   + R                 +IEL  ++RS  
Sbjct: 240 AHGRPRSLFVVGDGMQSIYGFRNADHSIINRFADDFP--------DAKVIELDTNYRSRQ 291

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL     V              + T+   + R    G  +    +    + +       
Sbjct: 292 PILDAAYAVIRH-----------SRTVAPMALRAAGGGVAERCLLIHESKNGRE------ 334

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                            A +IA +I+ +               + +++ +L R R  +  
Sbjct: 335 ----------------EAEQIARSINELHAQGR----------RLREMAILYRTRHMSRT 368

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
           I    R      +I+          D   ++D++A  R I +  D+LS V +   P    
Sbjct: 369 IEAALR----HARIAYNVRGGVGFYDRAVVRDVLAYLRVIANPADNLSLVRIANVPARGL 424

Query: 449 SEDDIFKICTQRHETE-------TVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSP 500
               I  +     + E             Q  +       + +   +     + A   SP
Sbjct: 425 GGQAIAHLSAFAAQNEIALSAALAQPAAQQHLSPKAAEGARRLANLLARWQRMAAGTASP 484

Query: 501 HDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                 +L          +R   E        L E +     ++     SL  ++ E+  
Sbjct: 485 DHLIADVLEQSGYMAALENRVSPEDLPDARGHLQELMRAAEEHD-----SLSSMLQEIAL 539

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
              T         ++V+++T+H AKGLE P VF+         H+               
Sbjct: 540 --LTSADEKEDERDQVQLLTIHAAKGLEWPFVFVTGLEEGTLPHE--------------- 582

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                       EE  RL YV +TRA+++L +      +  +  
Sbjct: 583 -------------------RSIATLEGIEEERRLCYVALTRAAERLYLSWTPGRNRGQIL 623

Query: 677 NQRTWYDMV 685
               + D +
Sbjct: 624 KPSRFLDEI 632


>gi|238809942|dbj|BAH69732.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 723

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 99/552 (17%), Positives = 175/552 (31%), Gaps = 116/552 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   + + Y +       LDF+DLII   +L       A I     ++ +++L+DE QD
Sbjct: 174 ALVGKIYSKYNQYLTSKKCLDFDDLIIKVKELFDNFPEVAKI---WSKKYSYVLVDEFQD 230

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS IQ+++++ L+ +             L  VGD  Q+IY + GA+   +L   +  +  
Sbjct: 231 TSTIQYDIVKYLSSNAQ-----------LTIVGDPDQTIYGWRGADVNLILDFDKDFKN- 278

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL   +K+    +                         
Sbjct: 279 -------TKTIILNTNYRSTKTILDAANKLIKHNKKRFSKDLI----------------- 314

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       ++       +   F    +       AR +   I+ +           
Sbjct: 315 -----------TNREQGTPIEFIHAFSVEAE-------ARWVVQKINELKKQ-------- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              IQ K+I +  R    +            +  I+    +         +K+ +A  R 
Sbjct: 349 --KIQLKNIAIFYRSNYYSRPFEEEL----INENINHKIFNGQKFFQRTEVKNALAFLRV 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQ---- 482
           I    D +S   ++  P     E  + K+     ++  T+Y Y+ K+             
Sbjct: 403 IYDGSD-VSLNRIINVPNRKIGEATLKKLQEAANNKKLTLYSYLIKYYKELPVPLNVKNN 461

Query: 483 --HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR 538
               +  I+      +  S        L      +             D + E +   + 
Sbjct: 462 IVKFLNKINLYRQALKSNSISVVLDKFLKEIGYYEHIEEETSLRGTAKDNVAELIRSIVT 521

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            E+ + +  + +   LE               N V +MTVH+AKGLE   +FLV    Q+
Sbjct: 522 WEKKNPN--KSIKEYLESVSLLSAGDEYDNFTNYVTLMTVHSAKGLEFDNIFLVGMSDQI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F +    K +                                     EE  RL YV +TR
Sbjct: 580 FPNYKSLKSNSDD--------------------------------ALEEERRLAYVAITR 607

Query: 658 ASDQLIICKHSN 669
           A ++L I     
Sbjct: 608 ARNRLFISDSRG 619


>gi|330827758|ref|YP_004390710.1| ATP-dependent DNA helicase Rep [Aeromonas veronii B565]
 gi|328802894|gb|AEB48093.1| ATP-dependent DNA helicase Rep [Aeromonas veronii B565]
          Length = 670

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 96/638 (15%), Positives = 204/638 (31%), Gaps = 124/638 (19%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +   E++     L   + +  +    +       ++ +       L   L 
Sbjct: 111 TDQLALLKELTEDELDNDKDKLSALISQISNWKNDLILPARAMRIARGPEE--VLMAQLY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y         LDF+DLI+    LLK       +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 ERYHRQMVAYNALDFDDLIVMPTLLLKSN---QEVRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ +  +                VGD+ QSIYS+ GA+P+ ++                
Sbjct: 226 LVKQIVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLSEDFP--------S 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS   IL   + + +   +           +  ++        V+L    
Sbjct: 268 LKLIKLEQNYRSKRRILKCANILIANNPH-----------VYDKALFSELDEGVKLKVLF 316

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
               +                          A RIA           +  +      + K
Sbjct: 317 AKNEE------------------------HEAERIAAE---------MMGHKFMNRTRFK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKD+MA  + +++ ++D
Sbjct: 344 DYAILYRGNHQSRIFEKAL----MTNRIPYRISGGTSFFSRTEIKDIMAYLKLLVNPDED 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGIS------KFQHVIKY 487
            +F+ ++  P        + K+        ++++    +               Q    +
Sbjct: 400 TAFLRVVNLPRREIGPTTLEKLGQYANQRGKSLFAASFELGLEQHLSGRGLVALQAFTNW 459

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN--- 539
           +  L   A   +P +    ++      +         +     +  +     +       
Sbjct: 460 LVRLGDQALRGNPVEAVRDMIKEIHYEEWLYETSPSPKAAEMRMQNVSTLYRWITEMLEG 519

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E     +L ++++ L       +     + ++V++MT+H +KGLE P V++V     + 
Sbjct: 520 DELEESMTLAQVVTRLTLRDMMERNEGEDDADQVQLMTLHASKGLEFPYVYMVGMEEGLL 579

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL YVG+TRA
Sbjct: 580 PHQTSID-----------------------------------EDNVEEERRLAYVGITRA 604

Query: 659 SDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
             +L   +CK      E    + + + +       +  
Sbjct: 605 QTELTFTLCKERRQFGESVRPEPSRFLLELPQDDLEWE 642


>gi|253991620|ref|YP_003042976.1| ATP-dependent DNA helicase Rep [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783070|emb|CAQ86235.1| Rep helicase, a single-stranded DNA dependent ATPase [Photorhabdus
           asymbiotica]
          Length = 675

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 98/629 (15%), Positives = 209/629 (33%), Gaps = 122/629 (19%)

Query: 85  ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
           +T ++ ++  +L +KL  S   +              S+      A+     Y+      
Sbjct: 120 LTADLLEEDKELLQKLIASISNWKNDLLSPQQAAELASSAQEHQFAE-CYRRYDLHLASC 178

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            VLDF+DLI     L+++ +    +R +    I ++L+DE QDT+  Q+++++ L     
Sbjct: 179 NVLDFDDLITKPTLLMQRDEE---VRERWQNRIRYLLVDEYQDTNTSQYQLVKLLVGQ-- 233

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                         VGD+ QSIYS+ GA+P+ ++  K+   K         ++++L  ++
Sbjct: 234 --------RARFTVVGDDDQSIYSWRGAKPQNLVLLKQDFPK--------LNVVKLEQNY 277

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS+  IL   + + +   +       S              G   + + + + ++     
Sbjct: 278 RSSGRILKAANILIANNPHVFEKRLFSEL------------GYGDMLKVITANNE----- 320

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                                A R+            + ++      Q KD  +L R   
Sbjct: 321 ------------------EHEAERVV---------GELIAHHFINKTQYKDYAILYRGNH 353

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            + +   +        +I    +          IKDL+A  R + + EDD +F+ ++ +P
Sbjct: 354 QSRVFEKML----MQSRIPYRISGGTSFFARPEIKDLLAYLRVLTNPEDDSAFLRIVNTP 409

Query: 445 LFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQF 497
                   + K+        +++Y+                +  Q    ++ E+    + 
Sbjct: 410 RREIGATTVQKLGEWANQRNKSLYQASFDLGLEQSLTGRGLAALQRFTHWMDEIARQIER 469

Query: 498 CSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFL----NFTLRNEQNSYSSLQ 548
                    +L                +     +  +++           +E N   +L 
Sbjct: 470 EPLLA-VRDLLHGMDYESWLYETSPSPKAAEMRMKNINQLFIWMSEMLEGDELNEPMTLS 528

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           ++++         +       ++V++MT+H +KGLE P VFLV     +  H+       
Sbjct: 529 QVVARFTLRDMLERGEDGEEFDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID--- 585

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                           +   +E  RL YVG+TRA  +L      
Sbjct: 586 --------------------------------EENIDEERRLAYVGITRAQRELFFTLCK 613

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                 +         +++   +D    +
Sbjct: 614 ERRQYGELICPEPSRFLHELPQDDLHWPQ 642


>gi|317485209|ref|ZP_07944090.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
 gi|316923500|gb|EFV44705.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
          Length = 1084

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 142/943 (15%), Positives = 285/943 (30%), Gaps = 87/943 (9%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
               E+      ++       + ++       +       L  ++ L  A          +
Sbjct: 204  EARETPLAHPSEIADRLGALIRNLRDAAENLLFLLTEEKLAVSKHLLNALDACRKNPPKN 263

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L     +  K +  + +      K S        + QD   K++      +  ++ +  +
Sbjct: 264  LPPKSTMWDKGSLDECLNKASKGKASDKSLSAFGELQDAVQKLKSDGELLRRAQTVMPFV 323

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             LA+ L+    +  K+   +    +      +L           ++   + HIL+DE QD
Sbjct: 324  ELARELSGQVPDFLKREGAVPAAFVPRLARQVLSGDYGVPEAFCRLGTSLTHILVDEFQD 383

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            TS  QWE I  L  +            +L  VGD KQ+IY + G +       +      
Sbjct: 384  TSREQWEAIHPLVLEALS------RGGSLTWVGDVKQAIYGWRGGDATLFDEVRSD--AE 435

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                  +  +  LP ++RS   I+   + +F             +  +   +        
Sbjct: 436  LCAVAPEPRVDILPTNWRSCRTIVETNNTLFRQLSETATAKAVLSAMLPKDTPSALLAAI 495

Query: 308  VQ----LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
            ++    L ++  +  +    P +         +  + S  +    +   +   +      
Sbjct: 496  LEEGAQLLKEGFAGSEQNVAPDKAEGFLRLQRVYGDKSEDLD-EEVRERLLGCVQEVVSR 554

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                       D+ VLVR       +            I VV ++ F+L +H  ++ + A
Sbjct: 555  R-------PWGDVTVLVRSNGKAAQVAGWLMEE----GIPVVTDNSFLLAEHPLVEQITA 603

Query: 424  LGRFILSQEDDLSFVCMLKS-----PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            L  F+ S  +DL+F   L       PL   SE  +      R  +E              
Sbjct: 604  LLTFLDSPRNDLAFWTFLSGRQMLLPLIPLSEQALEDWAAARRTSER---RNMPLFMAFR 660

Query: 479  SKFQHVIK-YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
              F  + + +I      A   +P+D     LG      ++           +  FL    
Sbjct: 661  EDFPDIWRKWIAPFHADAGLLTPYDVTREALGRLDIWSRYPDE-----AAFVRRFLEIIH 715

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              E   Y SL   +    ++    K       + VR+MT+H +KGL+ PVV +       
Sbjct: 716  VAEGQGYGSLSSFLDYWNKHGQQEKAPMPETLDAVRVMTMHKSKGLQFPVVIVPW----- 770

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
              H   +++          G+ +  P+S                    E   LLYV  TR
Sbjct: 771  --HNFSQRVDSPAVETHVDGLTVLAPRS----PASGYAHYKAIADNAREALHLLYVAWTR 824

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A ++L       +S+   S   +  +++  +    +   +      +   E      +  
Sbjct: 825  AEEELHAFLTETSSSRNASGLGSGLNVLLGALPMTKETFETGTPPFVRPAEQAREPKTMR 884

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
              +    E      + +   +  ++   P+          NP                  
Sbjct: 885  DGKAVAEELALIEPESIPAGQTNERW-RPMHWLPRLRIFRNP------------LEEFSF 931

Query: 778  QTFNRGLIIHKLLQ------VIFTLPEHKRKNFITSYCTKNAKLWPAKEY--KNLLLSIT 829
                RG   H  L        +   PE   +                 E     ++  + 
Sbjct: 932  TQKRRGTFAHHCLACLQTAGQLTGHPEEDARQAFKQGLRTFPLPIRDPETVEHEIVEMLA 991

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
                 P     +   +        +I     ++  S   D +    + I + EYKT    
Sbjct: 992  WYAALPEAGEWLRYGTP-----EQEIVDESGELYRS---DLVVDDGKRITVVEYKTGAPT 1043

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            P         H  QL  Y +++  + P + +  +L+Y+   ++
Sbjct: 1044 PA--------HEIQLQRYMRLISKAAP-RPVRGVLVYLDLKRL 1077


>gi|152997652|ref|YP_001342487.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MWYL1]
 gi|150838576|gb|ABR72552.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MWYL1]
          Length = 682

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 108/597 (18%), Positives = 205/597 (34%), Gaps = 121/597 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           LA  +   Y+   +    +DF+DLI+    LL      A +R +   ++ ++L+DE QDT
Sbjct: 175 LAAQVYVQYQRYLRAYNAVDFDDLILLPVSLLMAD---AELRDRWQNKVRYLLVDECQDT 231

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+E+IR L              R    VGD+ QSIY++ GA P+ + R         
Sbjct: 232 NASQYELIRLLAGF----------RRCFTLVGDDDQSIYAWRGARPENLERLSVDYP--- 278

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +++L  ++RST  IL   + + +   +    +  S                 
Sbjct: 279 -----SLKLVKLEQNYRSTKTILKAANTLIANNPHIYDKALWSDH--------------- 318

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                       + +P +   T   D+  +  +A I +R + + I               
Sbjct: 319 -----------EEGDPIRVMVTRNEDAESERVAAEIQSRHLRHEI--------------- 352

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                +D  +L R      L+    +     Y+I    N          IKDLM+  R +
Sbjct: 353 ---PYRDFAILYRGNHQARLLEIKLQA----YRIPYKMNGGTSFFSRAEIKDLMSYLRLL 405

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKF 481
           ++  DD +F+ ++  P        + K+         +++E        +  +   +   
Sbjct: 406 VNPSDDNAFLRIVNLPRREIGPATLEKVGNLATERGVSLFEASGYKELEETISGRSLKSL 465

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFT 536
           Q    ++  L    +  SP      ++           +      G+  I+ +   L+  
Sbjct: 466 QDFECWMSNLRQRLEGASPVPVIEQMIHDMDYYGWIQEQTSSNKAGDRRIENVRFLLDSI 525

Query: 537 LR-----NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            R      E++  + L + IS+L       ++    + ++V+++T+H +KGLE P VFL+
Sbjct: 526 QRMMESAWEEDETAGLDQAISKLLLIDMLERQEEEEDEDKVQLLTLHASKGLEYPHVFLI 585

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      ++    EE  RL 
Sbjct: 586 GCEEELLPH-----------------------------------RNSIENDDIEEERRLA 610

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           YVG+TRA   L I   +      +         + +    D   +         K E
Sbjct: 611 YVGITRAKKTLCITLAAKRRQYGEEIDCMPSRFLDELPEEDLVWEGRSDEGESTKKE 667


>gi|39939107|ref|NP_950873.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722216|dbj|BAD04706.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 747

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 94/566 (16%), Positives = 177/566 (31%), Gaps = 130/566 (22%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + A Y+   + N ++DF+DLI+ T+ LL++    A +R    Q+  ++L+DE Q
Sbjct: 182 YEFEMPIKAKYQIFLQNNNLVDFDDLILYTHQLLQEN---ADVRAFYQQKFQYLLVDEFQ 238

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT   Q++++  L ++           + +F VGD  Q+IYSF GA  +           
Sbjct: 239 DTDFFQYQILTLLAQN----------HQNIFVVGDPDQNIYSFRGARFENSQLFLNKFSP 288

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +            L  ++RS+ +IL   + +    E+                       
Sbjct: 289 QLA---------FLEQNYRSSKNILDKANLLIKHNED----------------------- 316

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                    +   ++   +   +  + D   +          I  TI N++         
Sbjct: 317 ----HPFKKNLKSTKSGGEPVIYKFFSDYKEETD-------YITKTIQNLVLQGI----- 360

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                  +D  +L R       +            I               +KD +A   
Sbjct: 361 ----CSYQDFTILYRTNILGRPLEEKFLA----NSIPYQVFGGISFYQSKVVKDFLAYLN 412

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS-----K 480
            I +   D  F  ++ +P        +  +    + +   +++ +       I      K
Sbjct: 413 VIANPSQDFDFKRIINTPKRGIGTTSLAHLEQLAQEKNLALFDALNYLDQTPIQPNTKTK 472

Query: 481 FQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKG-------RQQFISRFGNEVIDVLD 530
                K I  L       S     D  T I              +    +     +  ++
Sbjct: 473 LNEFQKLITALRQELINDSFDCLSDIITHIDEKINYCHKNDETYKMQSIKDSEPALHYIE 532

Query: 531 EFLNFTLRNEQN-SYSSLQELISELEQYPP--TIKRAHSANH------NEVRIMTVHTAK 581
           E  +  ++ E+N   +  ++L   L+Q      I      +       + V++ T+H  K
Sbjct: 533 ELKSVFMQAEKNLEGNIFEKLTQLLDQISLYSEINEQTEQDPKTPSKNDRVKLSTIHKVK 592

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE  VVF+       F                                         +K
Sbjct: 593 GLEFRVVFIAAFEDIFFDCN------------------------------------QKEK 616

Query: 642 STQEEYNRLLYVGMTRASDQLIICKH 667
           S  EE  RL YV +TRA ++L +   
Sbjct: 617 SDLEESRRLAYVAITRAEEKLFLTGA 642


>gi|85060368|ref|YP_456070.1| ATP-dependent DNA helicase Rep [Sodalis glossinidius str.
           'morsitans']
 gi|84780888|dbj|BAE75665.1| ATP-dependent DNA helicase Rep [Sodalis glossinidius str.
           'morsitans']
          Length = 675

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 108/737 (14%), Positives = 239/737 (32%), Gaps = 136/737 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   +  + +L +         KA  ++        +++ +
Sbjct: 59  ASREMKERV-AQTLGRAEARGLTVATFHTLGLAIIKREY--KALGMKAKFSLFDEQDQLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL    L++++      + + +     + K  L          R   +            
Sbjct: 116 LLKD--LSEQWLEGDKDLLKSLTSAISNWKNDLLSPAQAADAARSERD------------ 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L  +  A Y++      VLDF+DLI+    LL++ +    +R +    + ++L+DE QD
Sbjct: 162 KLFAHCYALYDDHLIAFNVLDFDDLILRPTQLLQRDEA---VRERWQNRLRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L                   VGD+ QSIYS+ GA P+ +   ++     
Sbjct: 219 TNTSQYELVKLLVG----------PRGRFTVVGDDDQSIYSWRGARPQNLALLQQDFPT- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I+L  ++RST  IL   + + +   +       S              G 
Sbjct: 268 -------LAVIKLEQNYRSTERILNAANILIANNPHVFEKRLFSRL------------GY 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             + + + + ++                          A R+            + ++  
Sbjct: 309 GDILKVITANNED-----------------------HEAERVV---------GELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + +D  +L R    + L   +        +I    +          IKDL+A  R 
Sbjct: 337 INKTRYRDYAILYRGNHQSRLFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + + +DD +F+ ++ +P        + K+        ++++            +  G+  
Sbjct: 393 LTNPDDDSAFLRIVNTPRREIGAATLAKLGTWATQRDKSLFTASFDLGLGQTLSGRGLES 452

Query: 481 FQHVIKYIHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
            Q    ++  +    +        +    I       +   S    E  +  +++  ++ 
Sbjct: 453 LQQFTHWLDGVARQVEREPVAAVRELIHGIDYESWLYESSTSPKAAEMRMKNVNQLFSWM 512

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  + N   +L ++++         +       ++V++MT+H +KGLE P VFLV 
Sbjct: 513 TEMLTGSDLNEAMTLDQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVFLVG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       ++  EE  RL Y
Sbjct: 573 MEEGLLPHQGSID-----------------------------------ENNIEEERRLAY 597

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA  +L            +  +      + +   +D + ++I+   S  +      
Sbjct: 598 VGITRAQKELTFTLCRERRQYGELVKPEPSRFLLELPQDDVQWEQIRKPVSAEERMSRGQ 657

Query: 713 EWSTHHPENTPLEREET 729
                        R E 
Sbjct: 658 GHLASLRAQLAKARGEA 674


>gi|220933808|ref|YP_002512707.1| ATP-dependent DNA helicase Rep [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995118|gb|ACL71720.1| ATP-dependent DNA helicase Rep [Thioalkalivibrio sp. HL-EbGR7]
          Length = 671

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 103/591 (17%), Positives = 197/591 (33%), Gaps = 119/591 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L A Y  A K    +DF+DLI+    LL++    A +R +      H+L+DE QDT+ 
Sbjct: 169 ARLYAAYVRALKAYNAVDFDDLIVQPVRLLEEN---AEVRERWQNRTRHLLVDEYQDTNT 225

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+ ++R L                L AVGD+ QSIY++ GA P+ +   ++   +    
Sbjct: 226 CQYRLVRLLVGVDGG----------LTAVGDDDQSIYAWRGARPENLAALQQDFPR---- 271

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST  IL   +++     +                          L
Sbjct: 272 ----LKVIKLEQNYRSTNRILQTANQLIGNNPHVFEKR---------------------L 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W  +      +  P  +                  A R+   I           +  K  
Sbjct: 307 WSALGEGEPIRILPCNDG--------------EQEAARVVAEI---------MKHKFKHR 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + +D  +L R    + +   L R     + I    +      +   +KD+MA  R + +
Sbjct: 344 TEYRDYAILYRGNHQSRVFEKLLRE----HAIPYKVSGGQSFFERSEVKDVMAYLRLLAN 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQH 483
            +DD +F+ ++  P        + K+       + ++     +           + + Q 
Sbjct: 400 PDDDTAFLRIVNVPRREIGPSTLEKLGEYATERSVSLLTACFEMGLTERLPARAVQRLQG 459

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-----EVIDVLDEFLNFTLR 538
              ++ E    A+   P      ++G        + +  +       +D ++E L++  R
Sbjct: 460 FADWLLEFGRKAEEGDPAKVARALIGELNYDDWLLDQARDPKAATRRMDNVNEVLDWMAR 519

Query: 539 NEQ---NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             +        + E++  +       +     + + V +MT+H AKGLE P VFLV    
Sbjct: 520 LSKEGAEGGKDIGEIVRHMTLMDILDRAGGEDDSDGVHLMTLHAAKGLEFPHVFLVGMEE 579

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
           ++  H+                                      ++   EE  RL YVG+
Sbjct: 580 ELLPHRVSL-----------------------------------EEDGLEEERRLAYVGI 604

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           TRA   L +      +   +         + +           K  +    
Sbjct: 605 TRAKLSLTLTYARKRTRFGEEVDCEPSRFIEELPREHLDWPDAKPPDPEEA 655


>gi|94312409|ref|YP_585619.1| ATP-dependent DNA helicase Rep [Cupriavidus metallidurans CH34]
 gi|93356261|gb|ABF10350.1| DNA helicase and single-stranded DNA-dependent ATPase [Cupriavidus
           metallidurans CH34]
          Length = 695

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 102/634 (16%), Positives = 192/634 (30%), Gaps = 126/634 (19%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            + +++ A    A  +  +Y         +DF+DLI    +L  + +    ++ K    +
Sbjct: 159 ALAQASDADEHQAAMVYRNYVATLHAYQAVDFDDLIRLPAELFARDEA---VQLKWQNRL 215

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            + L+DE QDT+  Q+++++ L         +H       AVGD+ Q+IY + GA    +
Sbjct: 216 RYFLVDEYQDTNACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNL 269

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              +               +++L  ++RST  IL   + V +           S      
Sbjct: 270 RLLQTDFP--------SLKVVKLEQNYRSTVRILEAANAVIANNPKLFDKKLWSEH---- 317

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                G    + +                             +     A  + +      
Sbjct: 318 -----GMGDPIAIHPM--------------------------NDEEHEAESVVFR----- 341

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               + ++  +R  Q +D  +L R      L   + R      +I  V +      D   
Sbjct: 342 ----LSAHKFERRAQFRDYAILYRGNHQARLFEQILR----RERIPYVLSGGQSFFDKAE 393

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ----- 471
           IKD+ A  R I + +DD +F+  + +P        +  + T   +   +++E        
Sbjct: 394 IKDICAYLRLIANPDDDPAFIRAITTPRRGVGNTTLEVLGTFAGQAKVSLFEAAMMGGIE 453

Query: 472 -KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVI 526
            K     +   +   + +  L   A+          ++               R      
Sbjct: 454 AKLQPRQLEPLRTFCESMVRLADRAKTDPATVVLDDLMEGIHYEAYLYDTFDERQAQSRW 513

Query: 527 DVLDEFLNFTL----------RNEQNSYSSLQELISE----LEQYPPTIKRAH----SAN 568
               EFL++              E   + +      E    LE        +       +
Sbjct: 514 TNTLEFLDWLKRKGTRPEPEGEGEATGFDTADGFGDEGKNLLELTQTVALMSMLEGREED 573

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + VR+ T+H +KGLE P VFLV     +  H                            
Sbjct: 574 PDAVRLSTLHASKGLEYPHVFLVGVEEGILPHSRED------------------------ 609

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                   + +     EE  RL+YVG+TRA   L I         + +        + + 
Sbjct: 610 --------EEMGDEKIEEERRLMYVGITRAQRSLQISWCRKRKRARDTYACEPSRFIAEM 661

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
              D    K +      KD     +     P   
Sbjct: 662 KLEDSPAPKDETPAMSPKDRLAGLKALLGKPAAE 695


>gi|254788455|ref|YP_003075884.1| DNA-dependent helicase II [Teredinibacter turnerae T7901]
 gi|237683747|gb|ACR11011.1| DNA helicase II [Teredinibacter turnerae T7901]
          Length = 728

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 114/624 (18%), Positives = 205/624 (32%), Gaps = 116/624 (18%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +           K +   YEEA +   ++DF +L++ +++L  K      +  
Sbjct: 157 EGLRPAHIDPGHDPFAQTMKLVYEAYEEACENAGLVDFAELLLRSHELWLKN---KSLLD 213

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +    IL+DE QDT+ +Q+  +R L                + AVGD+ QSIY + G
Sbjct: 214 HYQRRFVAILVDEFQDTNSVQYAWLRVLAGHACA----------VTAVGDDDQSIYGWRG 263

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + + + +               +  L  ++RST+ IL+  + V        G +   
Sbjct: 264 AKIENIQQFENDF--------APVGVTRLEQNYRSTSTILSAANAVIENNFGRLGKN--- 312

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                             LW             +     + F+   +       AR I  
Sbjct: 313 ------------------LW-------TDGGEGEHIDLFAGFNEQDE-------ARYIVE 340

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            + + +  D   +          D  VL R    + ++            +         
Sbjct: 341 RVQDYLREDGSRA--------RTDCAVLYRSNAQSRILEEAF----LRENVPYRIYGGQR 388

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470
             D L IK+ +A  R I S++DD +   ++ +P        I  I    R +  ++Y  +
Sbjct: 389 FYDRLEIKNALAYLRLISSRQDDAALERVINTPTRGIGAKTIESIRIFARDQGCSLYAAM 448

Query: 471 QKFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILGAKKG---RQQFISRF 521
           Q      +   +        +  I EL       +  +   L+L         ++     
Sbjct: 449 QAALRNKVFSARAAGALNGFVALIDELEENVAQLTLGEAAELVLEKSGLVEFHRKEKGEK 508

Query: 522 GNEVIDVLDEFLNFTLRNE--QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           G   ++ L+E +N     E      + LQE ++                 + V++MT+H+
Sbjct: 509 GQARVENLEELVNACRLFEPQDEEVTPLQEFLANAALDAGD--GQADEFEDAVQMMTLHS 566

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE P+VFL      +F HK                                      
Sbjct: 567 AKGLEFPLVFLAGMEENLFPHKMSLDEPG------------------------------- 595

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL YVG+TRA D+L+I    +       N       + +   N  R  +I+
Sbjct: 596 ---RLEEERRLCYVGITRAMDKLVISYAESRRMHGNENFNAVSRFIREIPQNLVREVRIQ 652

Query: 700 LTNSINKDEWIAYEWSTHHPENTP 723
            T S       +        ++ P
Sbjct: 653 STVSRPASYSSSSATRQTEVDDFP 676


>gi|260425183|ref|ZP_05779176.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470]
 gi|260404424|gb|EEW97971.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470]
          Length = 1285

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 115/685 (16%), Positives = 220/685 (32%), Gaps = 51/685 (7%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
              W   Y Q+    +    ++      +  +       S+ +  +E +    +    + 
Sbjct: 232 AQSWADSYRQIFTFLEN-EPALAPYAEMLSDEFDAFTILSKAETWDEWYQDAPNISFAKL 290

Query: 78  FTPQKNII------------TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
              +K+               Q I         +         + +   +  +M     A
Sbjct: 291 KAVKKSSSEDPIRFEEIKNNVQAIRNSVKKEVSEKLIPFFAISEEQWLHDVIRMHPIVRA 350

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----------KKRDVSAWIRYKID 174
              +    +  Y + KKK  +++F D+     D+L           +  +  +    ++ 
Sbjct: 351 LSDVTIAFSRAYADRKKKEGLMEFTDMEHYVLDILVDKTAEGFTPERAGEFPSSAARELQ 410

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++   I+IDE QDT+ +Q  +   L           S+ R  F VGD KQSIY F  A+P
Sbjct: 411 KKYKEIMIDEYQDTNDVQELIATLL-----------SNGRNRFMVGDVKQSIYRFRQADP 459

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               ++ R               I+L  +FRS A IL  ++ +F    + + L  D    
Sbjct: 460 TIFQKKYRSFSSDENAED---RRIDLNRNFRSDAAILASINYIFRQLMSEKLLELDYGDR 516

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                 R             V          + +     +S+   +S +   R IA  I 
Sbjct: 517 EALYPGRHEDSRPAAYAGGAVEVEFIDKVTDENTV-PMDESVNDITSITFEGRLIAKKIR 575

Query: 355 NMIGTDT--IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            ++      +  +G  R     DI +L+R              + N+  I    +     
Sbjct: 576 ALMEEKRQVMNKDGTFRSTDYSDIAILLRS---IDKKAPALLKVLNEEHIPATADKDDDF 632

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYE--- 468
              + ++ L +L + + +   DL  + +L+S L    E+D  ++      E +++++   
Sbjct: 633 IRSMEVQILWSLLKILDNPRQDLPLLAVLRSFLAGLDEEDFARLRLALAPEEDSLWDILP 692

Query: 469 -YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVI 526
                       +    +         A+          I+              G    
Sbjct: 693 RAKGIIPEEKALRLSRFLLLYETWRKEARKDGVAPLLRRIIEDTDYLSWVAGLPNGTAGK 752

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLES 585
             +  F       +  + + L   +  L +     K   ++   N V+IM++H +KGLE 
Sbjct: 753 SHVLSFYELAKTRDSATVNGLFSFLEYLRRAQKDFKTISTSAKGNAVQIMSIHKSKGLEF 812

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVFL D           + +     +            +   +     +     +  Q 
Sbjct: 813 PVVFLADAAKSFNVKDLDRTVIFHREMGLGIHYFDKEHMAHWPSLYWMAIRTAAGREAQA 872

Query: 646 EYNRLLYVGMTRASDQLIICKHSNT 670
           E  RLLYV MTRA D L I      
Sbjct: 873 EEARLLYVAMTRARDLLCITAFRKN 897



 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 70/245 (28%), Gaps = 22/245 (8%)

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
            A +          +  +E  +   +  +           +       +      +     
Sbjct: 1042 AVQTPAKLTATAAVALKEQQESGAEGIEPFSSETLAPAMESIPSGEESSLLPGYEDPPAF 1101

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNLL--- 825
             +        + G ++HK +++I     +   + +     +    K +  +E   LL   
Sbjct: 1102 LAETPAFTGTSYGTLMHKAMELIDLTKPYDGISDLRKEVERIYEEKGFTEEEKNALLQDS 1161

Query: 826  ------LSITRLLENPMMTTAMSCDS-YSEVSVSGKINC--------PKKDIIISGRIDQ 870
                    I R  E+ +            E+  S  +            + + + G +D 
Sbjct: 1162 KYRAPLRDIRRFTESALGRAMKKAAVIRKEMPFSLLLPAKRFYPGCEEGEKVFMQGIMDC 1221

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            +     +I I +YKT       +E +   +  QL +Y+   +       +   L      
Sbjct: 1222 LIERDGHIVIIDYKTDRT--DSVEELQSHYRTQLLVYKDAAQQLLGKPVIGAYLWSFHLG 1279

Query: 931  KVFII 935
            ++  I
Sbjct: 1280 QMIAI 1284


>gi|110004261|emb|CAK98599.1| putative atp-dependent dna helicase pcra protein [Spiroplasma
           citri]
          Length = 730

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 186/551 (33%), Gaps = 115/551 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE+  ++   +DF DLI+ T  L K       +  K     ++ L+DE QDT+ 
Sbjct: 170 AEIYDVYEKRLREINSVDFNDLILLTYKLFKNN---VEVLKKWQNRFDYFLVDEFQDTNE 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+++I+ L  D             +  VGD  Q+IYS+ GA+   +L   +        
Sbjct: 227 LQFDIIKWLVGD----------NHNITVVGDPDQTIYSWRGAKINLILNFDKYFPH---- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST +IL++ + +    +N       +                  L
Sbjct: 273 ----TQTIILNENYRSTQNILSLANNLIIHNKNRIEKDLFTIKASGQLPI---------L 319

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           +    S  +S                            +A+ I  ++  +          
Sbjct: 320 YHGANSSDESD--------------------------FVAHKIKTLMKEE---------N 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               DIL+L R    +  +         DY +S      F   +   IKD +A  + I++
Sbjct: 345 YNYNDILILYRANYLSRDLEGAL----ADYGLSYRIFGAFKFYERKEIKDALAFLKIIMN 400

Query: 431 QEDDLSFVCM-LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-FQHVIKYI 488
             D L+   + L +P          +I     E + ++  + +     +    QH +  +
Sbjct: 401 -NDPLAIERILLLTPK--IGPKAFEQIMQILKEQQIMFTTLLEQNFDLLPLNLQHSLNKL 457

Query: 489 HE-----LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
            E     L  +    S      L+L      Q+    F  E  + + E +   ++ ++ +
Sbjct: 458 REAIVIALGQLPTAKSIESLLVLLLDKTGYLQRLRDNFEEEREENILELIASVVKFDKQN 517

Query: 544 --YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                 + L   L+         +     N + +MT+H AKGLE  VVF+V     +F  
Sbjct: 518 KYLEGTELLNEYLQLISLQTDSDSDDLTDNTISLMTIHNAKGLEKKVVFIVGLNEGIFPT 577

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               K                                 ++    EE  R LYV +TRA +
Sbjct: 578 TQAIK---------------------------------METEQLEEERRALYVAITRAKE 604

Query: 661 QLIICKHSNTS 671
            L I      S
Sbjct: 605 LLFISYADGYS 615


>gi|160877210|ref|YP_001556526.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS195]
 gi|160862732|gb|ABX51266.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS195]
          Length = 685

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 103/611 (16%), Positives = 203/611 (33%), Gaps = 121/611 (19%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S F  Q        +TQ+   +  DL + L  +   +          +           A
Sbjct: 121 SLFDDQDTLALLKELTQDELDEDKDLLKALASTISNWKGGLIIPEHARKIAKDEQQHLFA 180

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y +  K    LDF+DLI+    LL+  +    +R +   +I ++L+DE QDT+ 
Sbjct: 181 M-LYQRYAQHMKAYNALDFDDLILMPTLLLRHHEE---VRTRWQTKIQYLLVDEYQDTNT 236

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  D                VGD+ QSIYS+ GA+P+ ++       +    
Sbjct: 237 SQYEMVKLLVGD----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGTDFPQ---- 282

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RS+  IL   + + +   +    +  S           G+   V  
Sbjct: 283 ----LKLIKLEQNYRSSQRILRAANILIANNPHVYDKALFSE-------LAYGEPLRVLF 331

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                        ++    A R+   I           +     
Sbjct: 332 ----------------------------AANEEQEAERVVAEIVR---------HKFVGR 354

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            Q  D  +L R    + L+           +I    +          IKD+M   + +++
Sbjct: 355 TQFGDYAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFARAEIKDIMGYLKLVVN 410

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQH 483
            +DD +F+ ++  P        + ++      +  +++  I +            S    
Sbjct: 411 PDDDNAFLRIVNLPKRGIGPSTLERLGNFANEKHISMFAAIFEPELNHHLPPAAMSSLYQ 470

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLR 538
             ++I E    A+   P +    ++               ++     +  + E   +   
Sbjct: 471 FGRFIVETGDHAERGEPVEAVKHLIRKINYEDYLYETSTSAKAAEMRMKNISELYRWVTE 530

Query: 539 N----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E +   +L E+++ L       + +     ++V++MT+H +KGLE P VF+V   
Sbjct: 531 MLAGDELDEPMTLPEVVTRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPFVFMVGVE 590

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            ++  H+                                       +   +E  RL YVG
Sbjct: 591 ERILPHQTSID-----------------------------------EDNVDEERRLAYVG 615

Query: 655 MTRASDQLIIC 665
           +TRA  +L   
Sbjct: 616 ITRAQRELWFT 626


>gi|262373227|ref|ZP_06066506.1| ATP-dependent DNA helicase Rep [Acinetobacter junii SH205]
 gi|262313252|gb|EEY94337.1| ATP-dependent DNA helicase Rep [Acinetobacter junii SH205]
          Length = 679

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 105/632 (16%), Positives = 210/632 (33%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ +      +T +  +          +L   YE  
Sbjct: 127 RDNLSGAESKELIAKAMKKISDWKNDLVIPEQAHSTCETPEDVQ-----LAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVMPTRLLQEN---AEVRDKWQNRVRYLLVDEYQDTNTAQYTLVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   K               +I+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLKDDFHN--------LKVIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  +    +   +D 
Sbjct: 281 EQNYRSTSRILKAANAVIENNPHIFDKKLWSDK------------GHGETIRVITCLNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A R+   + ++I    +           KD  +L 
Sbjct: 329 D-----------------------EAERV---VKDLITHKLMNGK------NWKDYAILY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARVLETQLRQMQ----IPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHEL-I 492
           + +P        + K+     E         +             ++      +I     
Sbjct: 413 INTPKRAIGPVTLEKLGLFAQENTLSLLTASSDQRLAMVLPKKAATQLHEFADFIATFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFL----NFTLRNEQNS 543
            +     P      ++           +           D ++       N   R +   
Sbjct: 473 ELLDDDEPVPKVRQMINEAGYIDYVREQAATPAQEKTKIDNIESLYTSIQNLINRTDDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I +L       ++    + ++V ++T+H AKGLE P V+++    ++  HK+ 
Sbjct: 533 EKNIESVIRKLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPYVYMIGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IASETIEEERRLMYVGITRARQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   +D   
Sbjct: 618 LTLAEQRKNGGQMRQMTPSRFLDELPQDDLEW 649


>gi|289705135|ref|ZP_06501539.1| UvrD/REP helicase [Micrococcus luteus SK58]
 gi|289558163|gb|EFD51450.1| UvrD/REP helicase [Micrococcus luteus SK58]
          Length = 1176

 Score =  259 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 134/1109 (12%), Positives = 269/1109 (24%), Gaps = 247/1109 (22%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R G+        +  D         + +  +  ++   G        Q L+ A       
Sbjct: 146  RIGVEP---EARLLGDA-DAHRLMGAVVRSHPVVADALGVAPSRLITQALRLAGDMAEHL 201

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
                 +  F            +       S +++E L    D                  
Sbjct: 202  VTADEVRGFLARLAEQGSALPLPPRAKTPSKEIQEFLTGLADR----------------- 244

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 L   L A Y+E K++  V+DF DL+ +   +  +   +     +       +L+D
Sbjct: 245  ----ALMADLVARYDEVKREQDVMDFGDLLRHAARIAVEVPAAG---EQERARFPVVLLD 297

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS  Q  +   L        +       + AVGD  QSIY F GA   ++      
Sbjct: 298  EFQDTSHAQMRIFAGLFGPRGPEDDAPGLGHCVTAVGDPHQSIYGFRGASAGQLFAFPHA 357

Query: 244  NQKRATNAGQKFSII-----ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +  T  G     +      L +++R+   IL V + V +        +  +   +R  
Sbjct: 358  FPRLETGPGGAPRRVNADVSHLTIAWRNEEAILAVANAVAAPLNAHAAAAGGAPVEVRTL 417

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
              R G    V   ++ V+  +                          A  +   +  + G
Sbjct: 418  RPRPGAGEGVVRVDRFVTAEE-------------------------EAADVVARLGALTG 452

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                               VL R R     +            +         L     +
Sbjct: 453  AGPGG--------TTPSRAVLCRTRAQFGPVLDALDA----AGLPYEVLGLSGLLALPEV 500

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK------ 472
             +++A+   +         V +L  P +     D+  +  +      +            
Sbjct: 501  AEVLAVLHVLADPTRSDQLVRLLTGPRWRIGVADLEVLQERARFVSRLRARRAAGGREDP 560

Query: 473  ---------------------------------------------FANCGISKFQHVIKY 487
                                                         F+  G+++ + V   
Sbjct: 561  AGDAPDVAPVRDVSPEEDADAAALLEALDSLPGEGTDWVGSRGRGFSPEGLARLRAVNAE 620

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEFLNFTLRNEQNSY 544
            +  L        P D    ++       +   R G         L+ F +        + 
Sbjct: 621  LRRLSTRTGE-DPADLIAEVIRETGLDVEVALRPGVSAAAARRHLNAFQDAARDFGAGTT 679

Query: 545  S-SLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +  L   ++     LE                V+++T H +KGLE  VV +       F 
Sbjct: 680  ATDLTAFLAWTESVLEHEDGLGVENAEPTPGLVQVLTAHASKGLEWDVVAVPGLQEGTFP 739

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK---------------------- 637
                 +     +      +          +   +   +                      
Sbjct: 740  STRADRWTSPRAGALPWPLRGDRASLPQWDGSWAQDQRDWVQSAGTGYSSKAAQEGNPDP 799

Query: 638  ---HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-NEKKSNQRTWYDMVYDSFHNDE 693
                +    + E  RL YV  TRA   L +        N++      + + V        
Sbjct: 800  YAVAVAAHAEREERRLAYVAYTRARSALWLSTSLFKGVNKEPLPASAFLEEVAGLAGEVP 859

Query: 694  --RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN-- 749
               +  +   + + +   +A           PL+  E      ++ +  ++     +   
Sbjct: 860  GVALGPVPAEDDLPEANPVAGRTLVARWPFDPLDGPEAFVADPEDPEDEERWQPLPRRSR 919

Query: 750  ----------------------------------------------DINEPYILNPSTID 763
                                                          +   P  ++ S   
Sbjct: 920  ARRHGVEAAAAAVHAADPAALGDDPELARQVDWVLLRRRDVAGTGGETALPEHVSVSLYG 979

Query: 764  TKGKTN--------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
                                      RG   H  L+                +       
Sbjct: 980  ELAADPQAVAEQLRRPLPRPPAHAARRGTAFHAWLE--------------ERFGATGMLD 1025

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE---VSVSGKINCPKKDIIISGRIDQIS 872
              + E    L  +   L+   M        ++E     V   +      I + GR+D I 
Sbjct: 1026 IDSAEDAADL-WVDEALDLGPMQEWFRSSHWAERTPAFVEAPVETTVGGITLRGRVDAIY 1084

Query: 873  ISQQ----------NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSL 920
             S            +  + ++KT          +      QL++Y       +  P + +
Sbjct: 1085 RSGGDPRLPFDPEADWELVDWKTGAVPRGRDLELKS---LQLAVYRLAWSRLHGIPLERI 1141

Query: 921  VCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                +YV+  +    P     +      T
Sbjct: 1142 GASFVYVAHGQERSFPDLPGEEELERHIT 1170


>gi|32477472|ref|NP_870466.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
 gi|32448023|emb|CAD77543.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1]
          Length = 787

 Score =  259 bits (660), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 123/763 (16%), Positives = 249/763 (32%), Gaps = 136/763 (17%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD-LKEKLKKSQDEFI 108
           AQ L++ +    + E +S+  S                  +  SP+ +   +  +++  I
Sbjct: 90  AQQLRRYAPMVGLAENYSIYDSSDSKSAMKRAITAAGVSTSHTSPEQIASAISNAKNRLI 149

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                       ++  A  T+A  +   Y++       +DF+DL+ +   LL++      
Sbjct: 150 T-----PEIMAQQTGRAGDTVAAKVYPVYQQQLLTANAVDFDDLLFHFARLLRENPE--- 201

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R  +D+++ +I++DE QDT+L Q+ ++R+L+ D             L   GD  QS+Y 
Sbjct: 202 VRSNLDEKLKYIMVDEYQDTNLAQYAIVRALSVD----------HPNLAVTGDPDQSVYG 251

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++               + L  ++RST +IL V D++       +  +
Sbjct: 252 WRGADLNNILDFEKDYPA--------VKTVRLEQNYRSTPEILRVADQLIRHNRRRKQKN 303

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                               +  +   Y D   +       A  
Sbjct: 304 LF----------------------------TDNPTGEAVTLRQYEDGYKE-------ADG 328

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I+N +              + +D  ++ R    T  I    R    +  I     +
Sbjct: 329 IADEIANQMIAG---------NAEPRDFAIMCRMNALTRSIEHALR----NRGIPYQIVN 375

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                    IKDL+A    I +   D++F  ++ +P        + +I          + 
Sbjct: 376 GLEFYQRKEIKDLLAYLHLINNPRHDVAFQRVINTPTRGIGAKTLERIQRFADDHRIPML 435

Query: 468 EYIQKFANCG--ISKFQHVIKYIHELIHIAQ---FCSPHDFFTLILGAKKGRQQFISRFG 522
           E  ++         + + ++     L          +  D    ++   K          
Sbjct: 436 EAARRVDEIDTLSKRAKTLVTSFIRLYDRLCIKATATLEDLLRFLIEEIKFVAYLERTTP 495

Query: 523 NEVI----DVLDEFLNFTLRNEQNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMT 576
            +        +DEF++  +  +Q      SL+  + ++     T     S   N V +MT
Sbjct: 496 EQQDNNPIANVDEFISAAVEFDQMHPEDGSLEAFLEQVALVSDTDAFEDSN--NRVTLMT 553

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE P VF++     +  H+  K                                
Sbjct: 554 LHAAKGLEFPRVFIIAVEDNLLPHRRSK-------------------------------- 581

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND---- 692
               ++  EE  RLL+VG+TRA   L I      S   ++        + +   ++    
Sbjct: 582 --EDETQLEEERRLLFVGVTRAEQWLQISYAKLRSFRGENQPAIPSMFLGELPRDEMQVV 639

Query: 693 ---------ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                    +     +  +S +  +  A    T     T +     I  + D+  IP   
Sbjct: 640 EVKGSRNFFDDAYDDEYPDSWDLVQEPAAVTDTGPAGQTDVADGPRILPMTDQSAIPDVY 699

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
              +     +   ++           L+S ++    +  G  +
Sbjct: 700 HDDVPPPKKKKPRVSIQAELKTASDLLQSGVTPLGAYREGSTV 742


>gi|290477141|ref|YP_003470056.1| rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus
           bovienii SS-2004]
 gi|289176489|emb|CBJ83298.1| Rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus
           bovienii SS-2004]
          Length = 676

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 97/629 (15%), Positives = 206/629 (32%), Gaps = 122/629 (19%)

Query: 85  ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
           +T ++ ++  DL +KL  S   +               +      A+     Y+      
Sbjct: 120 LTADLLEEDKDLLQKLNSSISNWKNDLMSPEQVIRQARSAQEHQFAE-CYRRYDLHLNSC 178

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            VLDF+DLI     LL + +    +R +   +I ++L+DE QDT+  Q+++++ L  +  
Sbjct: 179 NVLDFDDLITKPTLLLMQNEE---VRERWQNKIRYLLVDEYQDTNTSQYQLVKLLVGN-- 233

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                         VGD+ QSIYS+ GA P+ ++       +         ++I+L  ++
Sbjct: 234 --------RARFTVVGDDDQSIYSWRGARPQNLILLNEDFPQ--------LNVIKLEQNY 277

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS+  IL   + + +   +       S                                 
Sbjct: 278 RSSGRILKAANILIANNPHVFEKKLFS--------------------------------- 304

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
             E        + + ++    A R+            + ++      + KD  +L R   
Sbjct: 305 --ELGYGDPLRVIEANNEDHEAERVV---------GELLAHHFINKTEYKDYAILYRGNH 353

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            + +   +        +I    +          IKDL++  R + + +DD +F+ ++ +P
Sbjct: 354 QSRIFEKML----MQNRIPYRISGGTSFFSRPEIKDLLSYLRVLTNPDDDSAFLRIVNTP 409

Query: 445 LFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQF 497
                   I K+        +++Y                 +  QH   ++ E+   A+ 
Sbjct: 410 RREIGAMTIQKLGEWANQRNKSLYHASFDLGLEQSLTGRGLAALQHFTHWMDEISRQAER 469

Query: 498 CSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRNEQ----NSYSSLQ 548
                    +L                +     +  +++   +     +    N   +L 
Sbjct: 470 EPLLA-VRDLLRGMDYESWLYETSPSPKAAEMRMKNVNQLFTWMSEMFEGDDLNEPMTLS 528

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           ++++         +       ++V++MT+H +KGLE P VFLV     +  H+       
Sbjct: 529 QVVARFTLRDMLERGEDDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID--- 585

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                           ++  +E  RL YVG+TRA  +L      
Sbjct: 586 --------------------------------ENNIDEERRLAYVGITRARRELFFTLSK 613

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                 +  +      + +   +D    +
Sbjct: 614 ERRQYGELIRPEPSRFLLELPQDDLHWPR 642


>gi|77361677|ref|YP_341252.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876588|emb|CAI87810.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 653

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 104/647 (16%), Positives = 202/647 (31%), Gaps = 125/647 (19%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           +        LK  +   ++E I          + ++      L   L   Y+   +    
Sbjct: 107 KNDKDLLKLLKMAIGSWKNELI-----LPEQAIREAREPQKALFAQLYGRYQNQLRAYNA 161

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LDF+DLI+    LL     S   R +  Q   ++L+DE QDT+  Q+++++ L  +    
Sbjct: 162 LDFDDLIMIPTLLLTNNATS---RMRWQQRFKYLLVDEYQDTNTSQYQLVKLLVGE---- 214

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                       VGD+ QSIYS+ GA P+ ++   +              +I+L  ++RS
Sbjct: 215 ------RARFTVVGDDDQSIYSWRGARPQNLVLLSKDFP--------GLRLIKLEQNYRS 260

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              IL   + + +   +       S                                  +
Sbjct: 261 AGRILKAANILIANNPHDIEKKLFS----------------------------------E 286

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
             +      +          R +A  I          S+   +    KD  +L R     
Sbjct: 287 LGYGEPIKVIGCRDEEHESERVVAEII----------SHKFMKRTSYKDYAILYRGNHQA 336

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                         +I    +          IKD+MA  R +++Q+DD +F+ ++ +P  
Sbjct: 337 RGFEKSL----MSNRIPYKISGGMSFFSRSEIKDIMAYLRLLVNQDDDNAFLRIVNTPRR 392

Query: 447 NFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCS 499
                 + K+ T    +  +++            K           +++ EL   A    
Sbjct: 393 EIGTVTLEKLGTLANEKHMSLFATCFDNDLGYRLKGRGLNALTGFARWVVELSDNAVRGD 452

Query: 500 PHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLRN----EQNSYSSLQEL 550
             +    ++               ++     +  + E   +          N   +L E+
Sbjct: 453 TLEAVKDLVRNINYEAYLYESSPSAKAAEMRMKNVSELYRWITDMLTGDADNEPMTLAEV 512

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           +S+L       +       + V++ T+H +KGLE P VF+V     +  H+         
Sbjct: 513 VSKLTLRDMLERNEEEDEADAVQLSTLHASKGLEYPYVFMVGMEEGLLPHQVSID----- 567

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                         +   +E  RL YVG+TRA  +L +      
Sbjct: 568 ------------------------------EDNVDEERRLAYVGITRAQQELTLTYAKIR 597

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
               +++Q      V +   +D   +  K  NS  +          +
Sbjct: 598 RQFGETSQTELSRFVQELPQDDLAFENKKAPNSQAERMEKGQARVAN 644


>gi|114331347|ref|YP_747569.1| exodeoxyribonuclease V, beta subunit [Nitrosomonas eutropha C91]
 gi|114308361|gb|ABI59604.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Nitrosomonas
            eutropha C91]
          Length = 1228

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 139/1032 (13%), Positives = 292/1032 (28%), Gaps = 155/1032 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             K  W L   ++  +      + +     +  +A               ++   +     
Sbjct: 242  LKQPWALWADELQALLDAAEAAGQIDGRKL--RADWYTNWLNKL---RDWANDPAMDNVD 296

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
                 + + ++ I K           + D    +++  N              A ++   
Sbjct: 297  IGKGWERLTSEGIAKAWKKGTSPHHPAFDTIPVLKEALNNLPD-PRIELLSHAACWIAKK 355

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            ++  +K    + F DL+      L        +   I Q+    LIDE QDT  +Q+ + 
Sbjct: 356  FDTIRKHRSQIGFNDLLTGLETALTG-LYGERLAQVIRQQFPVALIDEFQDTDPVQYRIF 414

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
              + E      +++ +   L  +GD KQ+IY+F GA+    L+ +R  + R         
Sbjct: 415  EYIYE-----ISSNRNDCALILIGDPKQAIYAFRGADIHTYLKARRAVEGRL-------- 461

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L  +FRST  ++  V+  F+  EN                 R G    V   E   +
Sbjct: 462  -YTLNTNFRSTQAMVDAVNHCFASVENQADSRGA-------FLFRTGDGNPVPFLEVQAN 513

Query: 317  QHDSQCNPQQE-------SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK-- 367
                    + E       + ++    L +      ++   A  I + +        G   
Sbjct: 514  GRRDTFQIEGETLPAMLLAVSAQQMELSKTDYIEQMSALCATRIVDWLNDGKSAKAGFAG 573

Query: 368  ----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                 R ++  DI +LV    +   I    + L      SV  +D+  +       ++  
Sbjct: 574  QDMSFRAVRPGDIAILVNNGNEAANIR---QALLQRGVRSVYLSDKDTVYATRQATEVHR 630

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
                    ++D      L +     +  ++  + T     E  +E            +Q 
Sbjct: 631  WLAACAEPDNDRLLRAALSTTSLGLTLAELDALNT----DEAAWEAQVIQFKGYRELWQK 686

Query: 484  --VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LR 538
              V+  +  ++   +           L  + G +             L E L      L 
Sbjct: 687  QGVLPMLRRILVDFKCGDRLLALKENLNGQSGERILTDLL------HLAEILQQASFTLE 740

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E      L E I+  E    + K    ++ + V+++T+H +KGLE P+VFL        
Sbjct: 741  GEHALIRFLAEQIAAPEGEADSKKLRLESDSDLVKVVTIHKSKGLEYPLVFLPFICITRP 800

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                   +                           +++         E  R LYV +TRA
Sbjct: 801  IKNSDIPLKWHDDQGTLKISL----------AAHPEIMARADLERLREDVRKLYVALTRA 850

Query: 659  SDQLII---------CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
                 +             +    K +    + D +                ++  +   
Sbjct: 851  CYLTWMGLAPIKNKSSAVGHLFRLKATPAEQYLDALQSFVQERPDFCVTDKPDNNLEQYV 910

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                 +       PL       ++     +      P      E      + ++ + + +
Sbjct: 911  AETRSAPPGEACRPLRMVRENWRISSYSALRVDGNVPSTRIAQEDTPQAENLLEEQLERS 970

Query: 770  LESLLS------------DNQTFNRGLIIHKLLQVIFTL-------PEHKRKNFITSYCT 810
              SL                +    G+ +H+L++ +           E   ++ I   C 
Sbjct: 971  FISLQPVSEQPASVTIHHFFKGAEAGIFLHELMEWVANTGFTIVSSDETDLRDTIERRCK 1030

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPM-----------MTTAMSC-DSYSEVS-------- 850
                         L+  + R+L   +           +T   +  + ++E S        
Sbjct: 1031 MRH---WETWVAPLVDWVKRMLSTSLPFGSIGICLNTLTVVKAEMEFWAEASNVDLTLLD 1087

Query: 851  ---VSGKINCPKKDII--------ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI--- 896
               +   +    +  +        + G ID +       ++ +YK++     + ++    
Sbjct: 1088 AAVIEQTLASRPRPHLTQSELNGMLKGFIDLVFQYDGRYYVADYKSNWLGATDQDYTVAA 1147

Query: 897  ------PYTHIAQLSIYEKILKDS---------YPNKSLVCLLIYVSE------PKVFII 935
                     +  Q  IY   L            Y         ++V           F  
Sbjct: 1148 MDEVIRANRYDLQYVIYLFALHRLLKSRLPDYNYEQHVGGAACLFVRGIDAPTAGVHFER 1207

Query: 936  PQNKLNKAFAEI 947
            P   L     E+
Sbjct: 1208 PPGTLMDTLDEL 1219


>gi|260596037|ref|YP_003208608.1| DNA-dependent helicase II [Cronobacter turicensis z3032]
 gi|260215214|emb|CBA27073.1| DNA helicase II [Cronobacter turicensis z3032]
          Length = 736

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 103/581 (17%), Positives = 189/581 (32%), Gaps = 116/581 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 187 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNG 243

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R     Q     
Sbjct: 244 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFQ----- 288

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST +IL   + + +      G                      +L
Sbjct: 289 ---GAQTIRLEQNYRSTNNILNAANALIANNAGRLGK---------------------EL 324

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 325 W-------TDGSDGEPISLYCAFNELDE-------ARFVVNRIKVWQENGGAL------- 363

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              +D  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 364 ---QDCAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 416

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 417 RNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQACRQLLQEKALAGRAASALQR 476

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            ++ I  L H       H     ++        +    G +    I+ L+E +  T +  
Sbjct: 477 FLELIEALAHETIDMPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVTATRQFS 536

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +    A  + V++MT+H+AKGLE P VF+V     +F
Sbjct: 537 YNEEDEDLMPLQAFLSHAALEAGEGQADAWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 596

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 597 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 622

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +L +          K         + +         +++
Sbjct: 623 MQKLTLTYAETRRLYGKEAYHRPSRFIAELPEGCVEEVRLR 663


>gi|330447240|ref|ZP_08310890.1| ATP-dependent DNA helicase Rep [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491431|dbj|GAA05387.1| ATP-dependent DNA helicase Rep [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 672

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 93/607 (15%), Positives = 191/607 (31%), Gaps = 121/607 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L  +    Y+   K    LDF+DLI+    LL+  +    +R      I ++L+DE QD
Sbjct: 162 QLFAHCYEMYQRQMKAYNALDFDDLILMPVLLLRDNEE---VRKHWQNRIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+  ++ L  +                VGD+ QSIYS+ GA+P+ +    +     
Sbjct: 219 TNTSQYLFVKLLVGE----------RSRFTVVGDDDQSIYSWRGAQPENLALLNKDFP-- 266

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST+ IL   + + +   +    +  S                
Sbjct: 267 ------SLKVIKLEQNYRSTSRILRTANILIANNPHLFEKALFSEIP------------- 307

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                       +    +    A ++            + ++  
Sbjct: 308 ----------------------DGAMLKVITAKNEEHEAEKVV---------GELIAHRF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  +L R    + L            +I    +          IKD+MA  R 
Sbjct: 337 MNNTAYKDYAILYRGNHQSRLFEKSL----MQNRIPYKISGGTSFFSRSEIKDIMAYLRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SK 480
           + + +DD +F+ ++ +P        + K+        ++++    +              
Sbjct: 393 LTNLDDDNAFLRIVNTPRREIGPVTLEKLGTYANMRGKSLFAASFEMGLEQHLSGRGLES 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNF 535
            Q    +I++L   A+          ++                +     +  + +  ++
Sbjct: 453 LQRFTHWINQLADNAERGDTVSAVRQLVRDIHYEDWLYETSASPKAAEMRMKNVSDLYSW 512

Query: 536 TL-----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                   N      +L+E++  L       +     + ++V++MT+H +KGLE P VFL
Sbjct: 513 ITADLEGDNYDKEEKTLKEVVQRLTLRDMMERGEDDDDADQVQLMTLHASKGLEFPYVFL 572

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V T   +  H+                                       +   +E  RL
Sbjct: 573 VGTEEGILPHQTSID-----------------------------------EDNVDEERRL 597

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            YVG+TRA  +L            +  +      +Y+   +D   +  +   +  +    
Sbjct: 598 AYVGITRAQRELTFTLCKERRQFGELIKPEPSRFLYELPQDDLEWESERKPVTAEERMHK 657

Query: 711 AYEWSTH 717
                 +
Sbjct: 658 GQAHIAN 664


>gi|302383276|ref|YP_003819099.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193904|gb|ADL01476.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264]
          Length = 799

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 115/630 (18%), Positives = 193/630 (30%), Gaps = 119/630 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y+         DF DL+++   +L K    A I  +  +   +IL+DE QDT++
Sbjct: 214 QTLYAAYQSRLATLNACDFGDLLLHNLTILSKH---ADIAEEYRKRFRYILVDEYQDTNV 270

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R LT          SS   +  VGD+ QSIY + GAE   +LR ++        
Sbjct: 271 AQYLWLRLLT----------SSTGNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP----- 315

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 I++L  ++RST+ IL     + +   +  G +                     L
Sbjct: 316 ---GAKIVKLERNYRSTSHILGAASGLIAANRDRLGKT---------------------L 351

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W              +      +D   +        R IA  I                 
Sbjct: 352 W-------TEDQTGDKVRVRGVWDGDAES-------RLIADEIETAKRDG---------- 387

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++ +D+ VLVR              L     I           +   I+D  A  R I S
Sbjct: 388 MKYRDMAVLVRASFQMRAFEERFVLLA----IPYTVIGGPRFFERAEIRDAHAYLRLIQS 443

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQH 483
           ++DDL+F  ++  P     +  + KI    RH   +    ++      +      +    
Sbjct: 444 EDDDLAFERIVNVPKRGIGDTSVQKILQIARHNGVSAMTAVRDLITSDELQARTRTALSS 503

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQ 541
            ++ +     +A           +L          +    G   +D L E        E 
Sbjct: 504 FVRDLDRWRALASDTRHWLLTETVLEESGYTDMQKADRATGPARLDNLKELTQAMQSFET 563

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                   L + LE     +      + + V+IMT+H AKGLE P+VFL      VF  +
Sbjct: 564 --------LGAYLEHVSLVMDLDRGPSSDAVQIMTLHGAKGLEFPLVFLPGWEEGVFPSQ 615

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                     L ++                                 RL YVG+TRA   
Sbjct: 616 RSIDEKGEKGLEEE--------------------------------RRLAYVGVTRAKQD 643

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
             I   +N     +   +     V +        +        +     A       P  
Sbjct: 644 ARISFAANRLVYGRWTSQLPSRFVDELPIAHVEAESDTGYYGASGGMKEAKSRWDDAPSF 703

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                    ++             P +N +
Sbjct: 704 GAGYTSPGWQRAKAFTAGQTPGARPARNAV 733


>gi|220904252|ref|YP_002479564.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
 gi|219868551|gb|ACL48886.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
          Length = 1173

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 143/971 (14%), Positives = 291/971 (29%), Gaps = 95/971 (9%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI-----EERFSLLS 70
            +        Y  +S   +     +             L  AS  +       E+  +  +
Sbjct: 229  LLDSALLGRYGDLSSYEELEQKLIALNRTARQAAGHLLHAASGARLPWLSNAEKAVTAWA 288

Query: 71   SFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                       K+  +   ++     P+++                    +       S+
Sbjct: 289  DGECKNSAFLTKDAASQLFKKGAAVGPEVEHAYTAFSLAAQACMQDGQLLRQALRLEPSI 348

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLI--INTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             +A+ L   +   +++   L    L+     +++L           ++   + H L+DE 
Sbjct: 349  RMARILADAFLHNQEQEGTL--PGLLVPHMAHEVLSGDHGVPETLCRLGARLTHYLVDEF 406

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDTS  QW  +R L E+            +L  VGD KQSIY +   +P+          
Sbjct: 407  QDTSQEQWRALRPLVEEALS------RGGSLTWVGDVKQSIYGWRDGDPELFDGILED-- 458

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
            K         +   LP ++RS   ++   + +FS+ E A       +  +          
Sbjct: 459  KGLAAVAATTARDSLPFNWRSRRQVVEHNNALFSLLEQADTARAVMSALLPGDMPEDLSA 518

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              +    + +    +    +    T     +  E  A+  +  +   + + +G   +   
Sbjct: 519  EIMDASVKSLLGAFAGTRQECPEHTPDGGLVQVEDIAADSSEMLREAVFDRLGRILLDDV 578

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              +R     D+LVLVR       I      L     I V+  +  +L+ H  I   +AL 
Sbjct: 579  APQRP--WSDVLVLVRSNDGAARIADHLVRL----GIPVITENSLLLSAHPLIVQTVALL 632

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
             F+ S +D+++ + +L   +F+    +  ++           +           ++ HV 
Sbjct: 633  AFLDSPDDNIALLTVLTGEIFH-GHPEAAELAHTDLHGWCARQKKGFLYQSFRQRWPHVW 691

Query: 486  K-YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            +  +      +   +P+D         +  Q+F      E    L  F+      E+   
Sbjct: 692  QSLLAPFFSQSGLMTPYDTVLEWYARLQVEQRF-----PEAATFLRRFMEVLHSAEEKGL 746

Query: 545  SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            ++L   +          K     N N VR+MTVH +KGLE+PVVF+  T   + +     
Sbjct: 747  ATLSTFLEHWNAKSQEEKVPMPENMNAVRVMTVHKSKGLEAPVVFVPFTALNISASDKPL 806

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                    N      +   Q         DL +  +     E   LLYV  TRA D L I
Sbjct: 807  ------RTNRQGLSMMVRNQKALGRPYYEDLARQAR-----ESLNLLYVAFTRARDALYI 855

Query: 665  ---------------------CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
                                                        +               
Sbjct: 856  FRTSAKRQSPVLAGLDILWERAGLQPPYALGSLPTAADTSRGSHAHAAIGADVDTDCALP 915

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
             +         +                  +     P    +P      E    +P T D
Sbjct: 916  ASPAGGRPANPAPAPTPGLQHVDGTAGAPGILPAAAPAISRTPSVGADQEYDAFSPDTAD 975

Query: 764  TKGKTNLESLLSDNQTFN------------RGLIIHKLLQVIF-TLPEHKRKNFITSYCT 810
                      L   + F             RG ++H  L+ +  T    +      ++  
Sbjct: 976  AAEDWRPMQWLPRLKIFRNPMAAFDFQPEDRGNLLHFCLEHLRLTGSPREDAQAALNFGL 1035

Query: 811  KNAKLW---PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGR 867
            ++  L     A        ++      P     ++   + E S+        +  ++  R
Sbjct: 1036 RHYPLPVPDDAALRHGAFEALHWFASQPQSARWLANG-WPEHSIMTA-----QGQLL--R 1087

Query: 868  IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            +D +        + +YK+       +E +   ++        +L+    N  ++ LL+Y+
Sbjct: 1088 MDLLVHEPWGRLVIDYKSGQPEAAHVEQVR-RYLG-----GLLLERENANTPVMGLLVYL 1141

Query: 928  SEPKVFIIPQN 938
             + +  ++  +
Sbjct: 1142 DQRRFRLVTPD 1152


>gi|311087482|gb|ADP67562.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 645

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/551 (17%), Positives = 190/551 (34%), Gaps = 121/551 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            Y+   Y     K  +LDF+DLI     LLK       I+ +  ++I+++L+DE QDT+ 
Sbjct: 165 AYVYEQYTNYLYKANILDFDDLICMPTLLLKNN---KKIKIRWQKKISYLLVDEYQDTNN 221

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+I+ L           +       VGD+ QSIYS+ GA P+ +   K+        
Sbjct: 222 SQYELIKMLA----------NKNSDFTLVGDDDQSIYSWRGANPQNIFLLKKDFPN---- 267

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II++  ++RS+  IL   + + +   +       S                   
Sbjct: 268 ----LKIIKMEHNYRSSGRILKAANSLIANNIHYLEKKLFSQLK---------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                    +    +    A++I   I          S   K+ 
Sbjct: 308 -------------------YGNLIKVLIGKNEENEAQKIVKKI---------ISQYAKKK 339

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I+ +D  +L R    + ++            I    +++        IKDL++  R +++
Sbjct: 340 IKYRDFAILYRGNYQSRILEKAL----IKENIPYNISEKSSFFSRPEIKDLLSYLRVVIN 395

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQH 483
           ++D+ +F+ ++  P     +  + K+      +  ++++                 K ++
Sbjct: 396 RDDNHAFMRIVNIPSRQIGKTTLKKLEEWANKKHVSLFQASNNIEIKKFLNENTIKKIKN 455

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVL----DEFLN 534
            I  I +    +    P +    I+   +  +       +       I+ +      F N
Sbjct: 456 FISKIEKFTAWSC-LKPSNIIDDIVDDLEYEKWLSKFLKDPNKIKNSINNVHTLSQWFKN 514

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               ++     +L ++++ +               + V++MT+H +KGLE P VF++   
Sbjct: 515 MIKGDDFEKPMTLFQIVTRMTIRDILDDNIIKEQQDRVQLMTLHASKGLEFPAVFIIGMC 574

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +  ++                                   K +     EE  RL YVG
Sbjct: 575 EGILPNQ-----------------------------------KSIDDDNIEEERRLTYVG 599

Query: 655 MTRASDQLIIC 665
           +TRA  QL   
Sbjct: 600 ITRAKKQLFFT 610


>gi|256828187|ref|YP_003156915.1| exodeoxyribonuclease V, beta subunit [Desulfomicrobium baculatum DSM
            4028]
 gi|256577363|gb|ACU88499.1| exodeoxyribonuclease V, beta subunit [Desulfomicrobium baculatum DSM
            4028]
          Length = 1168

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 140/981 (14%), Positives = 299/981 (30%), Gaps = 137/981 (13%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-TQCIE 63
               ++ E+ E +    W +   +V  +    + +      +  K  Q L+          
Sbjct: 207  LDRAVREACERLKAS-WSVMEPEVRTLLLARADNFNARQFSPQKLDQRLKATRDFLNDPR 265

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
                           T  + +  +        L ++++   D+   +R     + +    
Sbjct: 266  LDAKEQLKALGELTSTYVQGMTKKAFTAPEHRLFDEIQNILDQVEALRHLLGPFVVHLR- 324

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                     + A  +E K++  VL F+DL+ N +  L   ++ A  R     +    LID
Sbjct: 325  ---HAFLSGVTARLDELKRRRNVLGFDDLLRNMHAALASPELVAAART----QYRAALID 377

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT  +Q+++ R+L         T     +LF +GD KQ+IYSF GA+    L     
Sbjct: 378  EFQDTDGLQYDIFRTLFA-------TGDGENSLFLIGDPKQAIYSFRGADLHTYLTAADS 430

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             ++  T          L +++RST +++  V+++F  P+N +   +         +    
Sbjct: 431  CERGMT----------LGVNYRSTPELIAAVNRLFFRPDNPRPFLDPKIAYQPVSAPDKE 480

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWT--SYFDSLPQESSASILARRIAYTISNMIGTDT 361
            +            + D Q       W   S    L + + A  + R +A  IS ++    
Sbjct: 481  R---------DRFREDGQTPAPMVLWQVKSADKPLAKGALAPRICRAVAAEISRLLRGAA 531

Query: 362  IFSNG-KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                      +   DI VLV        I      L+    I  V      +       +
Sbjct: 532  EGRIRIGDAPLLPGDIAVLVETHAQGEAIHQALGALR----IPSVVTHTSSVFASPEASE 587

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+++ R +   +   +    L +P+   +  D+  I                       K
Sbjct: 588  LLSVLRGMAECQRPAALRTALAAPMIGLTAPDLALID------------------EDGEK 629

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539
             +   +       +            +   +  R++ +S   G   +  +   L      
Sbjct: 630  LEEWFERFLACRELWDRRGVMAAVRRLFAGQDVRKRLVSLPDGERRMTNVLHCLELLHSR 689

Query: 540  EQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            E+ S +++  L++        +     +     + + V+I+T+H +KGL+ PVVF     
Sbjct: 690  ERESGAAMHALLTWFARRLGTEGTEESQLRLDTDRDAVQIVTIHKSKGLQYPVVFCP--- 746

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
               F     +       +++D  +             +   I       Q E  RLLYV 
Sbjct: 747  ---FIFGRARCPEDRALVHEDGLLLD------LGTEELPRRIGQALSEAQAERVRLLYVA 797

Query: 655  MTRASDQLI-ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +TRA  +   I    N +    +          ++           +  +  +       
Sbjct: 798  LTRAKCRCYAIWGRINEAETSGAAWLFHGHRADENSTLSWETVDEDMVCADLRVLANDDI 857

Query: 714  WSTHHPENTPLE-REETIKQLMDEQKIPKK---------LFSPIKNDINEPYILNPSTID 763
                 P+  P +   +         +   +          F+ +   +          +D
Sbjct: 858  EVAELPDAEPKQGPPQFTHAPDLRCRNWDRVLGSGFGLASFTGLTRGMEHGARPGLDEVD 917

Query: 764  TKGKTNLESLLS-DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
              G+   E  ++        G  +H++ + I    E      +T         +    ++
Sbjct: 918  ASGQAADEWSMANFPCGAAAGSCLHRIFERIDFADEITIPAAVTEALAAYG--FDPAWHQ 975

Query: 823  NLLLSITRLLENPMMTTAM-----SCDSYSEVSV-------------------------- 851
             +   + R+L   +            D   E+                            
Sbjct: 976  TVHDMVKRVLHADLGEGLQLGGIEQKDKLVEMEFLFPLRPVTRETLAAVYRDSAGLLPPD 1035

Query: 852  ----SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPY 898
                 G +    +   ++G +D +  S +  ++ ++K++   P                 
Sbjct: 1036 LPERMGNLRFEPRRGFMTGFMDLVVRSGRKFYLLDWKSNWLGPTPGHYTPDALHAAMAGS 1095

Query: 899  THIAQLSIYEKILKDSYPNKS 919
             +  Q  +Y   LK     + 
Sbjct: 1096 HYFLQYHLYCLALKRHLALRK 1116


>gi|296169029|ref|ZP_06850691.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
            BAA-614]
 gi|295896288|gb|EFG75947.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
            BAA-614]
          Length = 1135

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 132/956 (13%), Positives = 258/956 (26%), Gaps = 171/956 (17%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  I         +    +   L L            L    +   +    +DF   +
Sbjct: 237  ELERLIHTLPAGPYQRDRGPSQWLLRLLATQTQRAELVPLLDALDARMRAAKTMDFGVQM 296

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +   L         +  ++      +L+DE QDT   Q   + +L              
Sbjct: 297  ASAARLAANFP---QVGEELRGRYRVVLLDEYQDTGHAQRVALSALFG------GGVDDG 347

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R      +     G    ++EL  S+R+    L +
Sbjct: 348  LALTAVGDPIQSIYGWRGASATNLPRFATDFPR---ADGTPAPVLELRTSWRNPPRTLAL 404

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + + +           S      R       GTV        Q +              
Sbjct: 405  ANAISAEARRR------SVAVRPLRPRPDAPPGTVCCALLPDVQAER------------- 445

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                           IA  ++           G           VLVR+  D   I    
Sbjct: 446  -------------EWIADELAARYRAAQADGAG------PPTAAVLVRRNADAAPIADAL 486

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       + V       L     + D++A+ R +       + + +L  P +     DI
Sbjct: 487  RA----RGLPVEVVGLAGLLSVPEVADVVAMLRLVADPTAGAAAMRVLTGPRWRLGGRDI 542

Query: 454  FKICTQRHE--------------------------------TETVYEYIQKFANCGISKF 481
              +  +  +                                     +         I+  
Sbjct: 543  AALWRRARQLGEGPGGEGSPESIALAAGHDADTPCLADALADPGPADGYSAAGYRRITAL 602

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF--------- 532
               ++ +   +  +      +    +      R    +  G    + LD F         
Sbjct: 603  AAELRALRGHLGHSLPDLVAEVRRALGVDCDVRAAAGANAGWAGTEHLDAFADVVAGYAE 662

Query: 533  -LNFTLRNEQNSYSSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPV 587
             +      ++   +S+  L++ L+               A  + V+++TVH+AKGLE  V
Sbjct: 663  RVELAGAADRCPTASVAGLLAFLDVAETVENGLPPAPSVAARDRVQVLTVHSAKGLEWQV 722

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP----------------QSKSRNNI 631
            V +      VF     +   +  +    P +                       K  ++ 
Sbjct: 723  VAVAHLSGGVFPSAASRTTWLTDAAELPPLLRGDRAAAGALGVPVLDVSAVTNRKQLSDT 782

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN------------------E 673
            +S+  + L +   +E  RLLYV +TRA D L++  H   +                   +
Sbjct: 783  ISEHRRQLDQRRVDEERRLLYVAVTRAEDTLLVSGHHWGATGIKPRGPSDFLCEIKNVID 842

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE-------- 725
            + +       +V              L ++  +  W A   +    +             
Sbjct: 843  RSAAAGAPCGVVDQWAPAPADGDPNPLRDNTVEAIWPADPPAGRRGDVERGADLVARAMS 902

Query: 726  --REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
               +E    +         L +        P    P  +   G  +L    +      R 
Sbjct: 903  GDPQENTVDVEGWAADVDALLAERARSAEPPSRALPGQLSVSGLVDLARDPAGAAQRLR- 961

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL-ENPMMTTAMS 842
               H+L       P     N   ++  +        +  +L  +    + + P +    +
Sbjct: 962  ---HRLPTR--PDPHALLGNAFHAWVQRFYGAESLFDLADLPGAADADIGDTPELGALRA 1016

Query: 843  C------DSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEH 895
                    + + ++V      P  + ++ GRID +         + ++KT    P+  E 
Sbjct: 1017 AFTESPWAARTPIAVEVPFEMPIGETLVRGRIDAVFADPDGGATVVDWKTG-EPPRGPEA 1075

Query: 896  IPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
            +      QL++Y          P  S+     YV                 A +  
Sbjct: 1076 MRQA-AVQLAVYRLAWAALSGMPESSVRTAFYYVRARATVAPGDLPAPAELAGLLA 1130


>gi|320354828|ref|YP_004196167.1| exodeoxyribonuclease V subunit beta [Desulfobulbus propionicus DSM
            2032]
 gi|320123330|gb|ADW18876.1| exodeoxyribonuclease V, beta subunit [Desulfobulbus propionicus DSM
            2032]
          Length = 1172

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 124/965 (12%), Positives = 283/965 (29%), Gaps = 119/965 (12%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +         ++ W     QV+ + +  S  +   N     +   L  A           
Sbjct: 209  ARARDVFAQVREAWERQRAQVACLLEQDSSLLRNQNAYRHDQVTGLLAAMDGLAAGPVMP 268

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             L    + +        + ++ +   P+           F         +   ++     
Sbjct: 269  YLLPRIVARMAASVMATLVKKKSAGPPE-----HPFFALFDTFVQDHGRFLRCRTIQVLT 323

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            T   +++      K+    L F+DL+    + L++      +  ++       L+DE QD
Sbjct: 324  TARTFVHQERSRRKRAQGWLAFDDLLTRLAEALEQPGSGGQLADRVAARYPAALVDEFQD 383

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T  +Q++V   +            +   LF +GD KQ+IYSF GA+    +R +R     
Sbjct: 384  TDPVQYQVFSRIYR------QERPAGTALFLIGDPKQAIYSFRGADIFTYIRARRE---- 433

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +   +  ++RST  ++  V+ +F    +A   +ED       +++   +   
Sbjct: 434  ----TVPENRYTMGTNYRSTPAMVGAVNALFGCRRDAFVFTED-IDFQPVQAATEARAEP 488

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-FSNG 366
            + L  +            +   ++   ++ ++ +        + TI  ++    +  +  
Sbjct: 489  LLLDGEPAPPLIGLLLDSERLKSTRSTTISKDKALRAAVTVCSNTIVGLLDQARLGQATI 548

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              + +Q  DI +LVR  ++        +       ++ + + +  +      + L  +  
Sbjct: 549  GGQALQTSDIAILVRSHREA----EAMQAGLRRRGVNSLASSQASVFASEEARQLALVLA 604

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             ++   D       L + LF  +   +  + +                      ++  + 
Sbjct: 605  ALVDPGDPARIRTSLATDLFGCNAGQLHALNSDER------------------AWEIRLA 646

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQN 542
             +H    + Q          +L  +   ++  +R G E        L E L  +      
Sbjct: 647  DVHRYRQLWQEQGIMPMLQQLLAQEAVTRRLSARVGGERSLTNFLHLAELLQQSPAGRHG 706

Query: 543  SYSSLQELISELEQYP---PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              + L+    +++               +   +RI+T+H AKGLE PVVFL    +    
Sbjct: 707  MAALLRWFRQQIDHPDNTAADQLIRLENDEQLIRIVTIHRAKGLEFPVVFLPFPWAGRGL 766

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                              +  +  ++    E  RLLYV +TRA 
Sbjct: 767  DADQPLSFHERDSLGLTLDL---------GTGQEEHQRWAEQEQLAEELRLLYVAVTRAK 817

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               + C       E+       Y +        +     +L         +         
Sbjct: 818  SCCLFCWGRVNGLERSGLA---YLLHRARCPESDAQLCQELEQLGGAQPLVGLRPFPERF 874

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD--- 776
             +   + +  +          + +        +     + + ++T       +   +   
Sbjct: 875  GHHRFQSDIDLPMPQPRLFRGRVVPGWTITSYSRLASGSDAALETDRDEPAMAPSEEAAS 934

Query: 777  -------NQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                    +    G  +H LLQ +    P   ++  +     +               + 
Sbjct: 935  GCSPFTFPRGAASGTCLHTLLQRLECNHPVEGQQQLVAEVLEQGGI------EARWQATA 988

Query: 829  TRLLENPMMTTAMSCDSYSEVSV-----SGKINCPKKDIIIS------------------ 865
             R L+  +        S ++V V           P + + +                   
Sbjct: 989  VRWLDAVLAVELPGACSLNQVPVRDRINELGFLFPLEKVDLRRFNRLLDGAGLRPLTTPV 1048

Query: 866  --------GRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPY-----THIAQLSIYE 908
                    G ID +   Q   +I +YK++H  P       E +        +  Q  +Y 
Sbjct: 1049 TSLQGLMKGFIDLVFRFQGRYWIVDYKSNHLGPSLAHYTPEALAECMDSHQYHLQALVYT 1108

Query: 909  KILKD 913
              L  
Sbjct: 1109 LALHR 1113


>gi|317046397|ref|YP_004114045.1| DNA helicase II [Pantoea sp. At-9b]
 gi|316948014|gb|ADU67489.1| DNA helicase II [Pantoea sp. At-9b]
          Length = 720

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 99/580 (17%), Positives = 191/580 (32%), Gaps = 116/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +  +++L+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFSNVLVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRMLAGD----------TGRVIIVGDDDQSIYGWRGAQVENIQRFLQDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 273 --GAETIRLEQNYRSTNNILKAANALIANNNGRLGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  S    F+ L +       AR +   I                  
Sbjct: 310 -------TDGSDGEPISLYCAFNELDE-------ARFVVNRIKAWHENGNAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD +A  R + ++
Sbjct: 348 --ADCAILYRSNAQSRVLEEAL----LQGSMPYRIYGGMRFFERQEIKDALAYLRLMANR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P+    +  +  +    R +  T+++  ++       A    S  Q  
Sbjct: 402 NDDAAFERVVNTPVRGVGDRTLDVVRQTAREQQLTLWQATRELLQNRVLAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L         H     ++        +    G +    I+ L+E +  T +   
Sbjct: 462 CELVDSLASETAELPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVTATRQFSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H+AKGLE   VF+V     +F 
Sbjct: 522 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGVTRAM 607

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           ++L +          K         + +   +     +++
Sbjct: 608 EKLTLTYAETRRLYGKEVYHRPSRFIGELPEDCVEEVRLR 647


>gi|134096520|ref|YP_001101595.1| Rep helicase, a single-stranded DNA-dependent ATPase [Herminiimonas
           arsenicoxydans]
 gi|133740423|emb|CAL63474.1| ATP-dependent DNA helicase Rep [Herminiimonas arsenicoxydans]
          Length = 684

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 110/730 (15%), Positives = 219/730 (30%), Gaps = 133/730 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            L + E    + K+        VS  +      +      +      L+        ++ 
Sbjct: 69  ALEMQERIAKLLKEPKQAKQLTVSTFHSLGVKILRQEAKEL-----GLKDRFSIMDSDDC 123

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           FSL+    +T      + I T          K  L        + +D             
Sbjct: 124 FSLVQDMAITTDKQLVRRIQTAISL-----WKNGLIDPDAALNQAKDEDEAQ-------- 170

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               A  +   Y         +DF+DLI    +L +  +    +R K  +++ ++L+DE 
Sbjct: 171 ----AARIYRSYVATLSAYQAVDFDDLIRLPVELFRGNEA---VRDKWQRKLRYLLVDEY 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+++ L                  AVGD+ Q+IY++ GA  + + + +    
Sbjct: 224 QDTNTCQYELVKLLVTGI-------GKKPMFTAVGDDDQAIYAWRGATIENLKQLQVDFP 276

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      +++L  ++RS+  IL   + V          S  S   +          
Sbjct: 277 --------DLKVVKLEQNYRSSTRILQAANSVIGNNPKLFEKSLWSEHGL---------- 318

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                            +P +       D   ++ +  + A R                 
Sbjct: 319 ----------------GDPVKVLGMQDDDQEAEQIAIMLSAHR----------------- 345

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             +R  +  D  +L R    + +I    R      +I    +      D   IKD+++  
Sbjct: 346 -FERRAKFSDYAILYRGNHQSRVIEQALR----KERIPYTISGGQSFFDRAEIKDIISYL 400

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEY------IQKFANCGI 478
           R + +Q+DD +F+  + +P     +  +  +     + + +++E         K A   +
Sbjct: 401 RLVANQDDDPAFIRAVTTPKRGVGQSTLETLGAFAGQWQCSLFEAVFKGGLESKLAERQL 460

Query: 479 SKFQHVIKYIHELIHIAQFCSPHD-FFTLILGAKKGRQQFI----SRFGNEVIDVLDEFL 533
           +  +    +I++L   A            ++               R        + +F 
Sbjct: 461 TPLREFGNFINQLEAHAHREGQAASLLEDMMKEINYEAYLYDNFDDRQAQSKWQNVIDFT 520

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVVF 589
            +                S L+                  + VR+ T+H +KGLE P VF
Sbjct: 521 TWLKEKGSGGKDGNDPEKSLLDLTQMVALMTMLEGKDEEPDAVRMSTLHASKGLEFPHVF 580

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           LV     +  HK      I                                 +  EE  R
Sbjct: 581 LVGVEEGILPHKGDPDAPIETLG-----------------------------ARIEEERR 611

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L+YVG+TRA   L +         ++         + +   ++      +      +   
Sbjct: 612 LMYVGITRAQRSLHVSWCKKRKRAREHVHCDISRFIKEMKLDEGDAVPTEDEIITPQSRL 671

Query: 710 IAYEWSTHHP 719
              +     P
Sbjct: 672 ANLKALLQKP 681


>gi|296136948|ref|YP_003644190.1| UvrD/REP helicase [Thiomonas intermedia K12]
 gi|295797070|gb|ADG31860.1| UvrD/REP helicase [Thiomonas intermedia K12]
          Length = 669

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 101/578 (17%), Positives = 192/578 (33%), Gaps = 115/578 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A  + A Y +  +    +DF+DLI     LL++    A +R     ++ ++L+DE QD
Sbjct: 158 RVAAKVYARYADMLQAYQAVDFDDLIWLPVTLLQQH---ADVREHWQNKLRYLLVDEYQD 214

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q++++R L  D               AVGD+ QSIY + GA    + R +      
Sbjct: 215 TNAAQYDLLRLLVGD----------KGRFTAVGDDDQSIYGWRGATLDNLRRLQTDWPT- 263

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST  IL   + +          S  S           G+   
Sbjct: 264 -------LEVIKLEQNYRSTNAILRAANAIIQSNPKLYPKSLWSEH---------GEGEA 307

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V++                              +    A+ +A  I  +           
Sbjct: 308 VEV--------------------------RAAQNEDEEAQMVAARIQALRSG-------- 333

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            R  +   I VL R    +  +    R       I  V +      D   IKD+ A  R 
Sbjct: 334 -RNAELAHIAVLYRANHQSRPLEQALR----RANIPYVVSGGQSFFDRAEIKDVCAYLRL 388

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFAN------CGISK 480
           + + +DD +F+  + +P        +  + T   + + +++E + + +            
Sbjct: 389 LANPDDDPAFLRAVTTPRRGIGPQTLAALSTFAGQWKVSMFEALFRDSMPAAVGARPADH 448

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNF 535
            +   + +H++   A+     +    +L     R          R   +    +D+F  +
Sbjct: 449 LREFGRLLHDIEWRARTAPAGELLREMLETIGFRAWLEEHSDNPREAEQRWKNVDDFCGW 508

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             R  +     L ++   +     T  +      + V + T+H AKGLE P V L     
Sbjct: 509 IERKAEEDKVGLTQIAQTISLI--TQLQERGDQRDAVTLCTLHAAKGLEWPHVVLAGCEE 566

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +       +                                    ++QEE  RL+YVG+
Sbjct: 567 GLLPFFTDDRPLT--------------------------------DASQEEERRLMYVGV 594

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
           TRA   L++         + +  R+    + +      
Sbjct: 595 TRARQTLVLSWCQKRKQGRGAAGRSPSRFIGEMQTGQP 632


>gi|209693716|ref|YP_002261644.1| ATP-dependent DNA helicase rep [Aliivibrio salmonicida LFI1238]
 gi|208007667|emb|CAQ77777.1| ATP-dependent DNA helicase rep [Aliivibrio salmonicida LFI1238]
          Length = 671

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 102/638 (15%), Positives = 213/638 (33%), Gaps = 123/638 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++I+     L++ L         +        + +S      L  +   
Sbjct: 112 DQLALLKELTEKQIDGDKDLLRQLLSCISKWKTDMLTPDQVKGIVRSEQE--QLFAFCYE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y    K    LDF+DLI     LL+       +R +   ++ ++L+DE QDT+  Q+E+
Sbjct: 170 MYLTQMKAYNALDFDDLISLPVLLLRNN---QDVRERWQMKLRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 227 VKLLVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLILLSEDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +A      S                        
Sbjct: 269 KVIKLEQNYRSTSRILRAANILIANNPHAFEKRLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + +Q    +  D        +  A R+   I          ++        KD
Sbjct: 308 -------DGEQIKILTAKD-------DAHEAERVVGEI---------IAHRFLNRTDYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             VL R    + LI           ++    +          IKD+MA  R + + +DD 
Sbjct: 345 YAVLYRGNHQSRLIEKSL----MQNRVPYKISGGTSFFSRSEIKDIMAYLRLLTNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +       +  G+   +    ++
Sbjct: 401 AFLRVVNTPRREIGPVTLEKLGTYANMRGKSLFEACFEMGLEQTLSGRGLESLRRFGHWV 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTL-----R 538
             +   A+  +  +    ++               ++     +  + +  ++ +      
Sbjct: 461 VSISENAERGNTVEAVRSLVKDIHYEDWLYETSPSAKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           N      +L+E++  L       +       ++V++MT+H +KGLE P V+L+     + 
Sbjct: 521 NYDKEEKTLKEVVLRLTLRDMMERGEDEDGADQVQLMTLHASKGLEFPYVYLIGAEEGIL 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL YVG+TRA
Sbjct: 581 PHQTSVD-----------------------------------EDNVEEERRLAYVGITRA 605

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +L            +  + T    + +   +D   +
Sbjct: 606 KKELTFTLCKERRQYGELIRPTPSRFLEELPQDDLDWE 643


>gi|153002493|ref|YP_001368174.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS185]
 gi|151367111|gb|ABS10111.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS185]
          Length = 670

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 102/611 (16%), Positives = 204/611 (33%), Gaps = 121/611 (19%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S F  Q        +TQ+   +  DL + L  +   +          +           A
Sbjct: 106 SLFDDQDTLALLKELTQDELDEDKDLLKALASTISNWKGGLVIPEHARKIAKDEQQHLFA 165

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y +  K    LDF+DLI+    LL+  +    +R +   +I ++L+DE QDT+ 
Sbjct: 166 M-LYQRYAQHMKAYNALDFDDLILMPTLLLRHHEE---VRTRWQTKIQYLLVDEYQDTNT 221

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  +                VGD+ QSIYS+ GA+P+ ++   +   +    
Sbjct: 222 SQYEMVKLLVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPQ---- 267

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RS+  IL   + + +   +    +  S           G+   V  
Sbjct: 268 ----LKLIKLEQNYRSSQRILRAANILIANNPHVYDKALFSE-------LAYGEPLRVLF 316

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                        ++    A R+   I           +     
Sbjct: 317 ----------------------------AANEEQEAERVVAEIVR---------HKFVGR 339

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            Q  D  +L R    + L+           +I    +          IKD+M   + +++
Sbjct: 340 TQFGDYAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFARAEIKDIMGYLKLVVN 395

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQH 483
            +DD +F+ ++  P        + ++      +  +++  I +            S    
Sbjct: 396 PDDDNAFLRIVNLPKRGIGPSTLERLGNFANEKHISMFAAIFEPELNHHLPPAAMSSLYQ 455

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLR 538
             ++I E    A+   P +    ++               ++     +  + E   +   
Sbjct: 456 FGRFIVETGDHAERGEPVEAVKHLIRKINYEDYLYETSTSAKAAEMRMKNISELYRWVTE 515

Query: 539 N----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E +   +L E+++ L       + +     ++V++MT+H +KGLE P VF+V   
Sbjct: 516 MLAGDELDEPMTLPEVVTRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPFVFMVGVE 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            ++  H+                                       +   +E  RL YVG
Sbjct: 576 ERILPHQTSID-----------------------------------EDNVDEERRLAYVG 600

Query: 655 MTRASDQLIIC 665
           +TRA  +L   
Sbjct: 601 ITRAQRELWFT 611


>gi|291459846|ref|ZP_06599236.1| ATP-dependent helicase PcrA [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417636|gb|EFE91355.1| ATP-dependent helicase PcrA [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 834

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 113/722 (15%), Positives = 229/722 (31%), Gaps = 123/722 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+  + +    V+  +             + K+   L  A         
Sbjct: 78  GAGSGKTRVLTYRIAYLIENCGVAPWHILAITFTNKAAEEMRKRVDELLCAGGAAVWVST 137

Query: 66  FSLLSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  +    L ++        +    +   +   +++  K+ Q +    R+R     +  +
Sbjct: 138 FHSMCVRILRRRIEAIGYGPDFSIYDAEDQRTVMRQLFKELQIDPKSFRERAVLSAISAA 197

Query: 123 TLASLTL---------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             A ++                       YE+  ++N  LDF+DL++ T +L +K     
Sbjct: 198 KNAGISAEDFQKEQGADLRGKRIADCYTAYEKRLRRNNALDFDDLLLKTVELFRKDPE-- 255

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I     +   +IL+DE QDT+ IQ+E++  L E            R +  VGD+ QSIY
Sbjct: 256 -ILSFYQERFRYILVDEYQDTNDIQFELVHLLAE----------RNRNICVVGDDDQSIY 304

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA  + +L  ++              +++L  ++RST  IL   + V S  +  +  
Sbjct: 305 RFRGANLENILSFEKTWP--------DARVVKLEQNYRSTKPILDTANAVISHNKGRKEK 356

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 LW +     +                  +  SAS  A 
Sbjct: 357 R---------------------LWTEKKEGKEVSF--------------TEYESASEEAL 381

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   + +                  +D  VL R    + L             I     
Sbjct: 382 AVLREVESCGRA-------------YRDQAVLYRTNAQSRLFEEQ----CIRRNIPYQIV 424

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
                     IKD++A  + I ++EDD++F  ++  P        + K+      E  ++
Sbjct: 425 GGVNFYQRREIKDILAYMKLIANEEDDVAFERIINVPRRGIGAASLEKLRRCAEKEGLSL 484

Query: 467 YEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHD---------------FFTL 506
            E   +      +   +   +   + +       +     D                   
Sbjct: 485 SEASAQAEEIGISGKALKALRGFREMLQGWRTALKEAGLLDEAASPGREGSYSLRLLIES 544

Query: 507 ILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIK 562
           I        +  +    E     + ++E ++  +   E+     L   + E+       +
Sbjct: 545 IRDDSGYADELRAEGEVEAQTRLENIEEIISKAVSFQEEAEEVKLSAFLEEVSLISDLDR 604

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                  + + +MT+H AKGLE P V+LV     +F       ++    L ++  +    
Sbjct: 605 SDKEQ--DSLTLMTLHGAKGLEFPKVYLVGMSDGLFPG--FLSINEPEELEEERRLCYVG 660

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                   ++S     +      E+ RLL     R    L++ K     ++ +S      
Sbjct: 661 ITRAEEELVMSSARSRM---INGEFQRLLPSRFIREMPDLLVKKELLYRSDPESRWEGDS 717

Query: 683 DM 684
           ++
Sbjct: 718 EI 719


>gi|254448414|ref|ZP_05061875.1| ATP-dependent DNA helicase rep [gamma proteobacterium HTCC5015]
 gi|198262027|gb|EDY86311.1| ATP-dependent DNA helicase rep [gamma proteobacterium HTCC5015]
          Length = 671

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 109/605 (18%), Positives = 200/605 (33%), Gaps = 122/605 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               L A Y+        +DF+DLI+    L +  D +   R +   +++H+L+DE QDT
Sbjct: 163 ALAQLYARYQRQLLAYNAVDFDDLIMQPVRLFQSNDEA---RTRWQGKVHHLLVDEYQDT 219

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+E+I+ L                L AVGD+ QSIY++ GA P+ +           
Sbjct: 220 NASQYELIKLLLGH----------RGKLTAVGDDDQSIYAWRGARPENIQTLSEDY---- 265

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +I+L  ++RS A IL   + V +   +                         
Sbjct: 266 ----LSLKVIKLEQNYRSLARILKCANTVIANNSHLFDKK-------------------- 301

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW  +      +  P +              +    A RI            +      
Sbjct: 302 -LWSDLGVGDKIRVMPCR--------------NEEDEAERIVNE---------LIRTKFS 337

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              +  D  +L R    + +     R     + I    +      D   IKD++A  R  
Sbjct: 338 HRAKDSDFAILYRGNHQSRIFEAALRS----HNIPYKVSGGTAFFDRSEIKDVLAYLRLG 393

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKF 481
           ++  DD +F+ ++ +P        + K+    R    ++ E   +        N  + + 
Sbjct: 394 VNPTDDAAFLRVVNTPRREIGTSTLEKLGSYARQRQVSLMEACDEMGLEAVLGNAALLRL 453

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFT 536
           +    +I EL   A   S  D  + +L              ++         + E  ++ 
Sbjct: 454 RRFSDFIRELGRHADLASASDVLSGLLEDIHYADWLTDTSRDKDQAKAKLKNVAELQDWI 513

Query: 537 ------LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    E+    SLQ+LI+++       +++     + V +MT+H +KGLE P VFL
Sbjct: 514 GKMAKRQSEEKGEAFSLQDLIAKITLMDVMDRQSDDGEIDAVNLMTLHASKGLEFPHVFL 573

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 +  H                                      +++ T EE  RL
Sbjct: 574 AGMEENLLPH-----------------------------------RSSIEQDTIEEERRL 598

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            YVG+TRA   L +    N     +  +      + +   +D   +    ++   K    
Sbjct: 599 CYVGITRAQRTLCLSYAQNRKRAGEMIRTDHSRFLEELPESDILWEGRSESSPEEKKAVA 658

Query: 711 AYEWS 715
               +
Sbjct: 659 EASLA 663


>gi|148656349|ref|YP_001276554.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148568459|gb|ABQ90604.1| ATP-dependent DNA helicase, Rep family [Roseiflexus sp. RS-1]
          Length = 659

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 112/626 (17%), Positives = 202/626 (32%), Gaps = 112/626 (17%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNC 145
           +  ++ P    + ++      + + R  T ++                   Y+ + ++  
Sbjct: 132 DAARERPPALLEPEELLRHISRAKSRLLTPRLAARFARDDLARFVAGCYQRYQRSLERAN 191

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            LDF+DLI+ T+ L  +      +         H+LIDE QDT   Q  ++  LT     
Sbjct: 192 ALDFDDLILLTHRLFSEHPD---VLDACQSRWRHVLIDEYQDTDPAQHALVELLTR---- 244

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
               +   R+LFAVGD  Q+IY F  A+   + R +R              +IEL  ++R
Sbjct: 245 PSPANGGVRSLFAVGDGMQAIYGFRNADHTIISRFERDFP--------DARVIELATNYR 296

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           S   IL     V       Q ++  +T                               P+
Sbjct: 297 SRQPILDAAYAVIRHSRTVQPMALRATKP---------------------------ETPR 329

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
              +TS    +  + +    A R+A +I++++              + ++I VL R R  
Sbjct: 330 GVGYTSPLQIVDAKDARD-EAERVARSIADLLRQGR----------RPQEIAVLYRSRHM 378

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
           +       R      +I           D   ++D +A  R I +  D LS   +   P 
Sbjct: 379 SRAFESALR----HARIPYALRGATGFFDRAVVRDALAYLRVINNPADTLSLNRIANVPP 434

Query: 446 FNFSEDDIFKICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQF- 497
                + +  +     +            E +    +      + +   +     +A+  
Sbjct: 435 RGLGANSLVTLSAFAGQRGLTLADALIHPEALALLPSKAAEGARQLAALLTRWRRLAESA 494

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLRNEQNSYSSLQELISE 553
            SP      +L     +     R   E        L E  N    +       L   + E
Sbjct: 495 LSPDHLLADVLERTGYQAWLEQRLEPENVPDARAHLQELANAAADHTA-----LNAFLQE 549

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +     T    +    + V++ T+H AKGLE P+VF+V     V  H+H           
Sbjct: 550 VAL--LTSADDNDEERDRVQLSTIHAAKGLEWPIVFVVGLEEGVLPHEHSLVTP------ 601

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          +E  RL YV +TRA +QL +   ++    
Sbjct: 602 ----------------------------EGVDEERRLCYVALTRAGEQLYLSWAASRVRG 633

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIK 699
           K +    + + +        RVK  +
Sbjct: 634 KLAKPSRFLNDIEAYGRERARVKVER 659


>gi|126461535|ref|YP_001042649.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103199|gb|ABN75877.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 786

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 105/635 (16%), Positives = 196/635 (30%), Gaps = 122/635 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y++  ++    DF DL+++   + +       +  +  + + +IL+DE QDT++ 
Sbjct: 198 ELYDQYQQRLRELNATDFGDLLLHVLTIFQSHPD---VLEQYRRWLRYILVDEYQDTNVA 254

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          + R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 255 QYMWLRLLAQ----------THRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 298

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL     + +      G +                     LW
Sbjct: 299 --GAQVIRLEQNYRSTPHILAAASGIIAANAGRLGKT---------------------LW 335

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +   ++     ++D   +       AR I   + +          G     
Sbjct: 336 -------TERQEGEKVRLIGHWDGEEE-------ARWIGDEVESFQRG-----RGGLGPF 376

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D+ +LVR                    +           + L I+D MA  R  +S 
Sbjct: 377 RLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRLAVSP 432

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
           +DDL+F  ++  P     +    +I    R    ++ E              G  + +  
Sbjct: 433 DDDLAFERVVNQPKRGLGDKAQQEIQREARAHGTSLLEGARSLLARGGIGGKGAGQLRAF 492

Query: 485 IKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           +  +       + +          IL        + +    E    ++ L E +    + 
Sbjct: 493 VDGMDRWHGTTLDRDHDHIRLAEQILDESGYTAMWQADKTPEAPGRLENLKELVKALEQF 552

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     ++     + ++V IMT+H AKGLE PVVFL      +F 
Sbjct: 553 EN--------LQGFLEHVALIMENETEESVDKVTIMTLHAAKGLEFPVVFLPGWEDGLFP 604

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 605 SQR--------------------------------AMDETGLKGLEEERRLAYVGITRAE 632

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               I   +N     +     W   +   F ++     +++                   
Sbjct: 633 QLCTISFAAN-----RRVYGQWQSQLPSRFIDELPSAHVEVLTPPGLYGGGYGAAGMASS 687

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                 R +       ++   +    P+       
Sbjct: 688 LEAQALRADVYDSPGWKRMQTRAGGRPMAQPRESR 722


>gi|238750650|ref|ZP_04612149.1| ATP-dependent DNA helicase rep [Yersinia rohdei ATCC 43380]
 gi|238711040|gb|EEQ03259.1| ATP-dependent DNA helicase rep [Yersinia rohdei ATCC 43380]
          Length = 673

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 102/621 (16%), Positives = 207/621 (33%), Gaps = 125/621 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ + +  +    +        M +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLISQISNWKNDLLAPAAAAAMARSERD--KLFVHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+       +R +    + ++L+DE QDT+  Q+++++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQNN---QEVRERWQNRLRYLLVDEYQDTNTSQYQMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     S      VGD+ QSIYS+ GA P+ ++       +          +I+L 
Sbjct: 233 ----------SRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ--------LQVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S              G     + + + ++  
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKRLFSEL------------GYGDELKVITANNED- 321

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                                   A R+            + ++   +  Q  D  +L R
Sbjct: 322 ----------------------HEAERVV---------GELIAHHFVKKTQYSDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        I K+        ++++               G+   Q    ++  +I +
Sbjct: 407 NTPKREIGSATIQKLGEWANVRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWLDGVIRL 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN----EQNSYS 545
            +          +L                +     +  ++   ++        E N   
Sbjct: 467 VEREPVAA-VRDLLQGIDYESWLFETSPSPKAAEMRMKNVNLLFSWMTEMLEGSELNEPM 525

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           SL ++++         +       ++V++MT+H +KGLE P VFLV     +  H+    
Sbjct: 526 SLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID 585

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI-- 663
                                              +   +E  RL YVG+TRA  +L   
Sbjct: 586 -----------------------------------EDNVDEERRLAYVGITRAQRELFFT 610

Query: 664 ICKHSNTSNEKKSNQRTWYDM 684
           +CK      E    + + + +
Sbjct: 611 LCKERRQYGELIRPEPSRFLL 631


>gi|294102626|ref|YP_003554484.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261]
 gi|293617606|gb|ADE57760.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261]
          Length = 1173

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 142/881 (16%), Positives = 276/881 (31%), Gaps = 83/881 (9%)

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
            L        N I   + +     + +L K +         F+  +    +   L  +  L
Sbjct: 301  LKGASGKLANEIAFHLKEPVSQYRNRLIKEEPWITVFTQGFDEKEQAYRSC-LLGFSAIL 359

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
               ++E +++   L F+D+I    + L+             +    IL+DE QDT+ +Q 
Sbjct: 360  WQLWDEFRRRKNRLSFDDMIRYAMEALEHSPS-------YAERFKEILVDEFQDTNPLQD 412

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +I+++           S  + LF VGD KQSIY F  A+           +K     G 
Sbjct: 413  RLIQAV----------RSHSQRLFIVGDLKQSIYRFRHADLSL---FGSYIKKAKYGHGD 459

Query: 254  KFSIIELPLSFRSTADILTVVDKVFS----IPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                I L  SFRS   ++  V+ +FS         +      +  + H  S         
Sbjct: 460  ---YILLDTSFRSKEILVHEVNDLFSSVWKDGLGQELPLPFESLEVPHYLSTHELRQQCT 516

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
            +   +      +   +                +     +          T         R
Sbjct: 517  VDPFLTYLEGGKEGEKIREARLRQIRRLALLFSQYYEEK---------RTVWDKQKECLR 567

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +Q KD+ +LV  R  T     L +    ++++ +             I+DL+AL  F+ 
Sbjct: 568  PVQWKDMAILVPSR--TSWFPLLEKIFFEEFQLPIYFEGSTSYFSRSEIQDLIALLNFLD 625

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                +L  +  L SPL + S +++  +     +   +             K+ H+ + I 
Sbjct: 626  DPGKELYLMSFLSSPLSSLSLEEVRDLALDAPKGYRL--------QAFQEKWPHLARQID 677

Query: 490  ELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            +   +A F  P       L       + F +     V   + + ++     E+   +SL 
Sbjct: 678  DWRLMAHFLGPSAVLASFLEKSDSFLRAFPAWKRRGVAANMRKAIDMAREFEEAIGTSLP 737

Query: 549  ELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               S L +     ++    +      N +R+MTVH +KGLE PV+ ++       + +  
Sbjct: 738  GCASYLREAMERQEKFAEPDVSNEKENVIRVMTVHGSKGLEFPVLAVLGLERTSSAGEKG 797

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
              +   P +            S       S      ++   EE+ RL YV  TRA D LI
Sbjct: 798  -SLMPSPKMGVALSRIPGERNSGQAPLAWSLSRLFEEQEEYEEWQRLFYVACTRARDSLI 856

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            +C H     +  S        +      +  +  +    +            +H   + P
Sbjct: 857  LCGHLPWRRDGYSPGD--RSWLKMLLSWNPELLPLTDEPAAKAGGPKEERERSHKYSSVP 914

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
            L    +  Q +                           +  +               + G
Sbjct: 915  L--PSSEHQYLARISATSFALFQYCPYAYRMKHRQGHELVWEQ----PGEYPSEGGADVG 968

Query: 784  LIIHKLLQVIF--------TLPEHKRKNFITSYC--TKNAKLWPAKEYKNLLLSITRLLE 833
             ++H LL              PE +  +  T        A     +   ++   +    +
Sbjct: 969  SLVHYLLSQWDFASKPLESFFPEEENWDTFTETLPGKLRAVWKRPRVPSHIYSWLLTFQQ 1028

Query: 834  NPMMTTAMSCD--SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
              ++   +  +     EV     +        + G ID +      +FI ++K       
Sbjct: 1029 GAIVGRILKNNLTVKKEVPFRADL---VNGPTMVGAIDLLWHENDMLFIRDFK-----IT 1080

Query: 892  EIEHIPYT-HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
             I  +P   +  QL+ Y   +K +     +     ++ E  
Sbjct: 1081 TISQVPENLYRDQLAFYALAMKKTLSVPRISLGFWHLREGT 1121


>gi|146276730|ref|YP_001166889.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554971|gb|ABP69584.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 783

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 107/638 (16%), Positives = 197/638 (30%), Gaps = 123/638 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   ++    DF DL+++   + +       +  +  + + +IL+DE QDT++ 
Sbjct: 195 ELYDQYQTRLRELNATDFGDLLLHVLTIFQNHPD---VLDQYRRWLRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          S R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYMWLRLLAQ----------SHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL     + +      G +                     LW
Sbjct: 296 --GAQVIRLEQNYRSTPHILAAASGIIAANAGRLGKT---------------------LW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +   ++     ++D   +       AR I   + +          G     
Sbjct: 333 -------TEREEGEKVRLIGHWDGEEE-------ARWIGDEVESFQRG-----RGGLGPF 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D+ +LVR                    +           + L I+D MA  R  +S 
Sbjct: 374 RLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRLAVSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
           +DDL+F  ++  P     +    +I    R    ++ +              G  + +  
Sbjct: 430 DDDLAFERVVNQPKRGLGDKAQQEIQREARAHGASLLDGARSLLARGGIGGKGAGQLRAF 489

Query: 485 IKYIHEL--IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           +  +     I + +          IL        + +    E    ++ L E +    + 
Sbjct: 490 VAGVDRWHGITLDRDHDHIRLAEQILDESGYTAMWQADKTPEAPGRLENLKELVKALEQF 549

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     ++       ++V IMT+H AKGLE PVVFL      +F 
Sbjct: 550 EN--------LQGFLEHVALIMENETEEAADKVTIMTLHAAKGLEFPVVFLPGWEDGLFP 601

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 602 SQRS--------------------------------MDESGLRGLEEERRLAYVGITRAE 629

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               I   +N    ++   +    +               LT                  
Sbjct: 630 QLCTISFAAN----RRVYGQWQSQLPSRFIDELPSAHVEVLTPPGLYGGGYGAAGMASSL 685

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
           E+  +  +  +      +++  +  S       E   +
Sbjct: 686 ESRAVRAD--VYASPGWKRMQDRATSRPMAQPRESRHV 721


>gi|260906166|ref|ZP_05914488.1| putative ATP-dependent DNA helicase II [Brevibacterium linens BL2]
          Length = 850

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 89/636 (13%), Positives = 170/636 (26%), Gaps = 106/636 (16%)

Query: 101 KKSQDEFIKIRDRFNTYK--MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +        +++   T    + ++   +  +   +   Y    +     DF+DLI  T  
Sbjct: 156 RSMLHRISNLKNDLQTPDDFIPRANNPADEVLADVFKRYTSRLRLANAFDFDDLISETVH 215

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           L         +     +   HIL+DE QDT+  Q+ +I+             ++   L  
Sbjct: 216 LF---GAFPEVADFYRRRFRHILVDEYQDTNPAQYALIK----ALAGDGAGGATGAELTV 268

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  QSIY+F GA  + ++  ++               I L  ++RST +IL   + V 
Sbjct: 269 VGDSDQSIYAFRGATVRNIMEFEKDFPN--------AETILLEQNYRSTQNILDAANAVI 320

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           S  ++ +                        LW                 W +       
Sbjct: 321 SNNQDRKDKK---------------------LW------TSEGTGETIVGWVA------- 346

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +    AR I   +  +I  +              D  V  R    +  I         
Sbjct: 347 -ENEQAEARFIVDRVDELIDNE---------KYTYGDFAVFYRTNAQSRAIEDAL----V 392

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-C 457
              I           +   IKD +A  R + + +DD++   +L  P  +  +     +  
Sbjct: 393 RSGIPYKVVGGTRFYERKEIKDALAYLRVVANPDDDVNLRRILNVPKRSIGDRTEGIVAD 452

Query: 458 TQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
               E  + Y  + +            +        + +L   A+          IL   
Sbjct: 453 FADREGISFYTALGRLDEIVHLSARAKTSVAKFYDLMRDLAATAEAAPLSRVIEAILEQS 512

Query: 512 KGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN-------------------------- 542
              +        +    +D L E +                                   
Sbjct: 513 GYLESLQKSTDPQDESRVDNLAELVAVAEDFVATRALADATDDEDADDADAEAAETGSST 572

Query: 543 --SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                S  E     +        A     +        ++       V L     Q+   
Sbjct: 573 AVDEGSSAEDGDAGDSTDDAGADAADEGRDAPSAGG--SSIEAFLEQVALASDTDQIPDA 630

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +  +   +          P+        +            S   E  RL YVG+TRA  
Sbjct: 631 ELGQVTLMTLHTAKGLEFPVVFLTG-LEDGGFPHARSFENPSELSEERRLAYVGLTRARQ 689

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
           +LI+ +    S   +         + +   +    +
Sbjct: 690 RLIVTRAETRSMWGQPQYNPPSRFLSEIPESLIEWE 725


>gi|294673137|ref|YP_003573753.1| UvrD/Rep helicase family protein [Prevotella ruminicola 23]
 gi|294471939|gb|ADE81328.1| UvrD/Rep helicase family protein [Prevotella ruminicola 23]
          Length = 1099

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 158/971 (16%), Positives = 315/971 (32%), Gaps = 120/971 (12%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ++   I+ +   L    + +    ++  +E+ N  I KKA   ++    +        + 
Sbjct: 182  KTINAIFNENGNLNEKLLKEFQNILTEQIESYNEDIKKKA---KEFLSEKPNYHVLLNIY 238

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN----TYKMFKSTLAS 126
                 + F   ++ +T  + K   D +E +K  +   +  +   +       M       
Sbjct: 239  KEISGKTFLGAQSRLTPFVEKMKGDFQEFVKNIKSVLLSSKSTDSWKSPQKMMTTMVQTI 298

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              +A   N  ++  K ++ ++D+ D+      LL  ++V   I      +   +++DE Q
Sbjct: 299  FRIASNWNDGFKAFKDRHHIIDYNDMEEKFLKLLDTKNVCEEI----KADYKLMMVDEFQ 354

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D+S IQ  + + L++               + VGD KQSIY F GA+   V    ++   
Sbjct: 355  DSSPIQLSIFKKLSDLIEHS----------YWVGDPKQSIYGFRGADVSLVNDLIKLFDD 404

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     ++  LP S+RS   ++ +V+  F+   N           +    +R  + G
Sbjct: 405  EKEKKKNGLNLYSLPKSYRSRRKLVNLVNGCFTRAFN------GIINNVELEPARQDEEG 458

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD---TIF 363
              +                     ++++     +       + A  +  ++ ++      
Sbjct: 459  LSEPL-------------------AHWNCSGNMNQNKTFIEKTADRVKQLLDSNLKVKPK 499

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                 R I+  DI +L  K  +                I V   +   ++  + I  +++
Sbjct: 500  GAQSIRDIEPGDIAILCLKNSECKSYAKALAA----RGIPVSFVN-DDISQQIEIHLVIS 554

Query: 424  LGRFILSQE------------DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            L + ++               +D S   +L S L       I +   +  E + + +   
Sbjct: 555  LLQLMIEPSNKHVRAELVRLLNDDSTTKILNSRLDYLYNQSIEREKKENPEDQQLPDEWM 614

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLD 530
                        +I+ +   I   +  S  D    ++      +        E     L 
Sbjct: 615  NDNP--------LIEKLVAFIKAGRDFSVSDLVENVIYGLSLPELVAKWGEKEIRQQNLS 666

Query: 531  EFLNFTLRNEQ-----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
                   + +         +S+   IS L       K     + N V+++T H +KGLE 
Sbjct: 667  TVRALARQYDSHCQQMGIGASVGGFISYLSYAKVENKID--NSINAVKVLTYHKSKGLEW 724

Query: 586  PVVFLVDTGSQVFSHKHI-----KKMHIMPSLNDDPGIPIWIPQSK-------------S 627
              V +           H        +  M S ++D  +   +P+                
Sbjct: 725  NYVIMDSLFDNKLKDDHFALWNYWGVREMRSEDNDHYVIQHLPRIMSSITYKSTLPQLYL 784

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
             N I     K +K+    +   LLYVGMTRA D L      + +   +S    +   + +
Sbjct: 785  DNVIQLSSYKAIKERETNQLRHLLYVGMTRARDYLTTLGRCSNARNNRSIPTAY--WIKN 842

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE---QKIPKKLF 744
            +  ++  + +        K+     E  T+ PE    +  E       E    +   K  
Sbjct: 843  AGISEGVMNQSLGVLWGEKNLDGNPEDITNIPEADKSKATEYKYFDYPELIISEREPKYI 902

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKN 803
            SP K    E    N   +D            D      G  IH +  V   TL   +  +
Sbjct: 903  SPSKLPQIEFAKENIEILDNLKCRIENYDTDDTNQAAAGTCIHNIFAVYDPTLSHEENVD 962

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
              T     N       E + ++ SI  L      T   +     EV     +       I
Sbjct: 963  KATDIRNGNNMYGIISEPEEVINSIEHLYAWLEQTYGKASSVKHEVPFIQPLP----GQI 1018

Query: 864  ISGRIDQI-SISQQNIFIFEYK-------THHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
            + G ID +  +++    + ++K       T  +   + EH    + +QL  Y  +L    
Sbjct: 1019 VHGEIDLLWYLNENECVLIDFKNFPGDRATITNPDPKNEHYAGKYASQLKAYRDVLHA-- 1076

Query: 916  PNKSLVCLLIY 926
               ++   LIY
Sbjct: 1077 SGITVRDALIY 1087


>gi|156740410|ref|YP_001430539.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
 gi|156231738|gb|ABU56521.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
          Length = 759

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 114/792 (14%), Positives = 227/792 (28%), Gaps = 156/792 (19%)

Query: 8   SLNESYELIYKDLWPL--PYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  E  + + K L P       V   +   +  +   +  + ++             +++
Sbjct: 67  AAREMRDRLEKLLGPGEAAALTVGTFHSICARFLRRDSIHLGRERD-----FAIYDTDDQ 121

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             ++           +K+                 +       + ++       +     
Sbjct: 122 LRVMKRVLRDLNLDEKKHAP---------------RAIHAAISRAKNELIDPDAYSRHAH 166

Query: 126 SL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
           S    +     A Y+E  +    LDF+DL++ T  L ++      +  +  +    +L D
Sbjct: 167 SYFEEVVARCFARYQELLRGANALDFDDLLVETVRLFEEHPA---VLERYQERYGFLLAD 223

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q+ +++ L           S    +F VGDE QS+Y+F GA+ + +L  +R 
Sbjct: 224 EYQDTNRAQYVLLKQLA----------SRHHNIFVVGDEDQSVYAFRGADIRNILSFERD 273

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +          +I L  ++RST  IL V   V +     +          +   +R G
Sbjct: 274 YPE--------AQVILLEQNYRSTQAILDVAQAVINRSAQRR--------RDKRLWTRNG 317

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
           +   VQ+                           +       A+ +A  I+ +I      
Sbjct: 318 EGVLVQVI--------------------------EGYDQDEEAQLVAGEIARLIAGG--- 348

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   Q  DI ++ R    +  I           +   +        +   IKD +A
Sbjct: 349 ------AYQPGDIAIMYRTNAQSRAIEEALIA----RQAPYIIVGGTRFYERKEIKDALA 398

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE------------------- 464
             R  L+  DD+S   +L  P     +     +  +                        
Sbjct: 399 YLRLALNPFDDISLSRVLNWPARGIGQRTQEDLERRAGAAAVPLYVMLHTLAANAEAAAD 458

Query: 465 ----TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                      +  +   +     +  I E +   Q  S       +      R+     
Sbjct: 459 QTTSPAPARTGEMPSRARNALLGFLTLIDESLDRRQTLSLGALMDWLFERVGFREALRRE 518

Query: 521 FGNE----VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIM 575
           +G+E      + + E  N   +      +S L   + E+               N V  +
Sbjct: 519 YGDEEGDDRWNNVMELRNVAEQYADLPLASQLSTFLEEVALVSDIDT--LQEERNAVTCI 576

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE PVVFLV     +  H                                   
Sbjct: 577 TLHQAKGLEFPVVFLVGLEEGLLPH----------------------------------A 602

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                +   +E  RL YVG TRA ++L +      +   ++   T    ++D   +  + 
Sbjct: 603 RSADDRDALDEERRLFYVGATRAKERLYLLHAFRRATYGRTEIATPSRFLHDIPPDLLQR 662

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
              +   +       A                 +                       E  
Sbjct: 663 APKRGYAAAQMVTGRAAALRNPRRNQAAPVSPHSAAPDGPRAISFFAGQKVHHAQFGEGI 722

Query: 756 ILNPSTIDTKGK 767
           +++   ++   +
Sbjct: 723 VVSSKLVEGDEE 734


>gi|156935862|ref|YP_001439778.1| DNA-dependent helicase II [Cronobacter sakazakii ATCC BAA-894]
 gi|156534116|gb|ABU78942.1| hypothetical protein ESA_03745 [Cronobacter sakazakii ATCC BAA-894]
          Length = 720

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 102/581 (17%), Positives = 188/581 (32%), Gaps = 116/581 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNG 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  IR L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST +IL   + + +      G                      +L
Sbjct: 273 ---GAQTIRLEQNYRSTNNILNAANALIANNAGRLGK---------------------EL 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I                 
Sbjct: 309 W-------TDGSDGEPISLYCAFNELDE-------ARFVVNRIKVWQENGGAL------- 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              +D  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 348 ---QDCAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQACRQLLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE 540
            ++ I  L H       H     ++        +    G +    I+ L+E +  T +  
Sbjct: 461 FLELIEALAHETIDMPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L  L + L        +    A  + V++MT+H+AKGLE P VF+V     +F
Sbjct: 521 YNEEDEDLMPLQAFLSHAALEAGEGQADAWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMF 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL YVG+TRA
Sbjct: 581 PSQMSLDEGG----------------------------------RLEEERRLAYVGVTRA 606

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +L +          K         + +         +++
Sbjct: 607 MQKLTLTYAETRRLYGKEAYHRPSRFIAELPEGCVEEVRLR 647


>gi|301060341|ref|ZP_07201204.1| exodeoxyribonuclease V, beta subunit [delta proteobacterium NaphS2]
 gi|300445537|gb|EFK09439.1| exodeoxyribonuclease V, beta subunit [delta proteobacterium NaphS2]
          Length = 1223

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 137/1014 (13%), Positives = 288/1014 (28%), Gaps = 169/1014 (16%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETG----NPTILKKAQTLQQASQTQCIEERF 66
            ++ E   ++         + I    S  +  G      ++ K+ + +   +         
Sbjct: 221  QAIETARREWSADFETAANQIRDAASRKILNGRTYAAGSLEKEIRQMGCWAADNGPLPDA 280

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             LL  F  T           +          E L    +    +                
Sbjct: 281  RLLYKFSHTGLNE----GANKNKTPPEHHAYEALDLLNNVLDPLDVEKAL---------L 327

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            +  A+ ++A Y+  K    ++DF+DL+   N+ L +      +   I ++    +IDE Q
Sbjct: 328  VHAAREIHARYQHQKALQKIVDFDDLLDRLNEALHRDGNGR-LAQTISEQYPVAMIDEFQ 386

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +Q+     +                   +GD KQSIY+F GA+ +  LR ++    
Sbjct: 387  DTDPVQYTAFSKIYGG--------RPQTAFLMIGDPKQSIYAFRGADIQTYLRARKD--- 435

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                         L  ++R+T +++  V+++F                I           
Sbjct: 436  ------TGDVPHTLDANYRATKELVHAVNQMFGFANKHPEGPFLFNNRIPFEPVVPKGP- 488

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--- 363
              +    +     S  + +Q S              S +A   A  I +++         
Sbjct: 489  --EGELVIRESPSSGLHIRQMSQKEPVPKTGPRGYLSKMAEDFAGEIVHLLNLAEQVPPR 546

Query: 364  ------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                   +   + ++  D+ ++VR   +  +I             SV  +D+  + D   
Sbjct: 547  AFFRNTPDAPLKPLRPADVAIMVRSGGEARIIRKELDKCGIR---SVYLSDKTSVFDARE 603

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
             +D++ L R       + +    L +P+ +     +  +       E   E   ++    
Sbjct: 604  ARDVLYLLRACAWPGVERTLKAALATPILDLPLHHLDDLNRNEAAWEKEIERFGRYQWIW 663

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             +  + V+  +  L+            + +L A +G +   +         L E L    
Sbjct: 664  HT--RGVLPMLRTLLQD------FGMSSGLLTATEGERAATNFL------HLAELL-QAK 708

Query: 538  RNEQNSYSSLQELISELE----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              E      L   + +                 ++   V+++T+H +KGL+ P+VFL   
Sbjct: 709  SLELEGPQGLINWLEDQLQKHPAGSAEQILRLESDEALVKVVTIHKSKGLQYPLVFLPFV 768

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             S              P               +    + S  I  ++     E  RLLYV
Sbjct: 769  CSFR---------QTTPKDMAMATYRDEQGDVRLVKPLDSATIGEMETKRLAEDLRLLYV 819

Query: 654  GMTRASDQLI----ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK------------- 696
             +TRA         +      + EK +   + +  +          +             
Sbjct: 820  AVTRAQYACWMGIGVMGRKLKNGEKNTLHLSGFGYLLSGGEVIPTRELSRKLQSLKGQCQ 879

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLER------------------------EETIKQ 732
             I         +  AY  +T      P                            +   +
Sbjct: 880  HITFETMPETPDHTAYTPNTQTVPLMPARPFDTPVFRDWRISSYSGILKATGTVPQNTLE 939

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
              ++       FS +++ + E      S  +        S+ +  +    G  +H LL+ 
Sbjct: 940  TAEQGTPFDFPFSSMEDQLRESEEAYFSYPEQGQ--GKPSIHNFPKGPEPGTFLHGLLEW 997

Query: 793  IFTL---PEHKRKNFITSYCTKN-AKLWPAKEYKNLLLSITRLLENP----------MMT 838
                      +  + I +   +             L   +   L+ P           +T
Sbjct: 998  AAREGFNKVARDPSLIDAEVQRRSRHRGWQNWVDALRKWLQDFLKTPIPLPGQETLLRLT 1057

Query: 839  TAMSCDSYSEVSVS-----GKINCPKK--------------------DIIISGRIDQISI 873
               S     E+          I                         + ++ G ID +  
Sbjct: 1058 DLPSAGYRPELEFLFAAHRVHIGALDGILTREILPGSERAPLQNFHINGMLKGFIDLVFE 1117

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSIYEKILKDSYPNK 918
             Q   ++ +YK++H       + P         + +  Q  +Y   L      +
Sbjct: 1118 FQGKYYVLDYKSNHLGENTQAYQPNAMVRAMLSHRYDLQYVLYTLALHRLLKAR 1171


>gi|188532349|ref|YP_001906146.1| ATP-dependent DNA helicase Rep [Erwinia tasmaniensis Et1/99]
 gi|188027391|emb|CAO95238.1| ATP-dependent DNA helicase Rep [Erwinia tasmaniensis Et1/99]
          Length = 672

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 103/656 (15%), Positives = 212/656 (32%), Gaps = 121/656 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K++  + +      L++ +    +    + D         S      L  +  A
Sbjct: 112 DQLALLKDLTERWLENDKNLLQQLISTISNWKNDLMDPPRAAAGALSERD--KLFAHCYA 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K   VLDF+DLI+    L ++      +R +  Q I ++L+DE QDT+  Q+E+
Sbjct: 170 LYDKHLKSCNVLDFDDLILLPTLLFQRN---LEVRERWQQRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++  +              
Sbjct: 227 VKLLVG----------ARARFTVVGDDDQSIYSWRGARPQNLVLLQEDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S                        
Sbjct: 269 QVIKLEQNYRSSECILKAANILIANNPHVFEKRLFS------------------------ 304

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                      E        +   +     A R+   I  +I    I         Q  D
Sbjct: 305 -----------ELGYGAELKVVTANHEDHEAERV---IGELIAHHFI------NKTQYGD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + +   +        +I    +          IKDL+A  R + + +DD 
Sbjct: 345 YAILYRGNHQSRVFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNADDDS 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++               G+   Q    ++
Sbjct: 401 AFMRIVNTPRREIGSATLQKLGEWATQRNKSLFNASFDVGLGQTLTGRGLESLQRFTHWL 460

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQ--- 541
            E+  +A+        D    +       +   S    E  +  ++    +     +   
Sbjct: 461 QEIARLAECEPVAAVRDLIRGVDYESWLFETSASPKAAEMRMKNVNTLFQWMTEMLEGSD 520

Query: 542 -NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 521 IDEPMTLTQVVTRFTLRDMMERGESDEGSDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       ++  EE  RL YVG+TRA  
Sbjct: 581 QSSID-----------------------------------ENNVEEERRLAYVGITRAQK 605

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           +L            +  +      + +   +D + +  +   S  +          
Sbjct: 606 ELTFTLCRERRQYGELVRPEPSRFLLELPQDDLQWESERKVVSAEERMQTGQSRVA 661


>gi|304412235|ref|ZP_07393844.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS183]
 gi|307306979|ref|ZP_07586719.1| ATP-dependent DNA helicase Rep [Shewanella baltica BA175]
 gi|304349501|gb|EFM13910.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS183]
 gi|306910557|gb|EFN40987.1| ATP-dependent DNA helicase Rep [Shewanella baltica BA175]
          Length = 670

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 103/611 (16%), Positives = 204/611 (33%), Gaps = 121/611 (19%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S F  Q        +TQ+   +  DL + L  +   +          +           A
Sbjct: 106 SLFDDQDTLALLKELTQDELDEDKDLLKALASTISNWKGGLVIPEHARKIAKDEQQHLFA 165

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y +  K    LDF+DLI+    LL+  +    +R +   +I ++L+DE QDT+ 
Sbjct: 166 M-LYQRYAQHMKAYNALDFDDLILMPTLLLRHHEE---VRTRWQTKIQYLLVDEYQDTNT 221

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  D                VGD+ QSIYS+ GA+P+ ++   +   +    
Sbjct: 222 SQYEMVKLLVGD----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPQ---- 267

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RS+  IL   + + +   +    +  S           G+   V  
Sbjct: 268 ----LKLIKLEQNYRSSQRILRAANILIANNPHVYDKALFSE-------LAYGEPLRVLF 316

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                        ++    A R+   I           +     
Sbjct: 317 ----------------------------AANEEQEAERVVAEIVR---------HKFVGR 339

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            Q  D  +L R    + L+           +I    +          IKD+M   + +++
Sbjct: 340 TQFGDYAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFARAEIKDIMGYLKLVVN 395

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQH 483
            +DD +F+ ++  P        + ++      +  +++  I +            S    
Sbjct: 396 PDDDNAFLRIVNLPKRGIGPSTLERLGNFANEKHISMFAAIFEPELNHHLPPAAMSSLYQ 455

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLR 538
             ++I E    A+   P +    ++               ++     +  + E   +   
Sbjct: 456 FGRFIVETGDHAERGEPVEAVKHLIRKINYEDYLYETSTSAKAAEMRMKNISELYRWVTE 515

Query: 539 N----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E +   +L E+++ L       + +     ++V++MT+H +KGLE P VF+V   
Sbjct: 516 MLAGDELDEPMTLPEVVTRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPFVFMVGVE 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            ++  H+                                       +   +E  RL YVG
Sbjct: 576 ERILPHQTSID-----------------------------------EDNVDEERRLAYVG 600

Query: 655 MTRASDQLIIC 665
           +TRA  +L   
Sbjct: 601 ITRAQRELWFT 611


>gi|224534767|ref|ZP_03675339.1| ATP-dependent DNA helicase PcrA [Borrelia spielmanii A14S]
 gi|224514015|gb|EEF84337.1| ATP-dependent DNA helicase PcrA [Borrelia spielmanii A14S]
          Length = 658

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 104/578 (17%), Positives = 194/578 (33%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 165 IFRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 221

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 222 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGASYNNMLQFEKDY-------- 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 263 -NAKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           +  + D + +          IA  I  +          K    Q
Sbjct: 307 -------------VIDFFIFEDEIQES-------EFIASQIIEL---------SKLEDFQ 337

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           +K I VL+R       +  + R       I    +          I+D+++    I++ +
Sbjct: 338 SKKIGVLMRTNALFKNVEMIFR----RQGIKYKVSGGTSFFQRKEIRDIISYLNVIINPK 393

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y  +   A                 
Sbjct: 394 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYNALCDIAFSFASISSYDKVLNKQV 453

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +    +  +  +    ++ + +     ++               +
Sbjct: 454 IESIEDFVSFIEEYQYKFSIKKNTYSNIIKEMIESIEYWGFLVNENPNSIKVAEYKYQNI 513

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L          +  + N  + +MTVH+AKGLE   V
Sbjct: 514 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEMNEESENVNINLMTVHSAKGLEFDYV 573

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H  I +   +    +                                  
Sbjct: 574 FFIAVEDNIIPHHRIIEESEVGLEEE---------------------------------R 600

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D LII   +    +++  ++     + 
Sbjct: 601 RVFYVALTRAKDSLIITMANKRKKDRQIFEQLPSRFIS 638


>gi|15617184|ref|NP_240397.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681934|ref|YP_002468320.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682489|ref|YP_002468873.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471646|ref|ZP_05635645.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11134339|sp|P57654|REP_BUCAI RecName: Full=ATP-dependent DNA helicase rep
 gi|25290762|pir||C84999 ATP-dependent DNA helicase Rep [imported] - Buchnera sp.  (strain
           APS)
 gi|10039249|dbj|BAB13283.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622222|gb|ACL30378.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624777|gb|ACL30932.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086318|gb|ADP66400.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086892|gb|ADP66973.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087963|gb|ADP68042.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 645

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 95/551 (17%), Positives = 190/551 (34%), Gaps = 121/551 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            Y+   Y     K  +LDF+DLI     LLK       I+ +  ++I+++L+DE QDT+ 
Sbjct: 165 AYVYEQYTNYLYKANILDFDDLICMPTLLLKNN---KKIKIRWQKKISYLLVDEYQDTNN 221

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+I+ L           +       VGD+ QSIYS+ GA P+ +   K+        
Sbjct: 222 SQYELIKMLA----------NKNSDFTLVGDDDQSIYSWRGANPQNIFLLKKDFPN---- 267

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II++  ++RS+  IL   + + +   +       S                   
Sbjct: 268 ----LKIIKMEHNYRSSGRILKAANSLIANNIHYLEKKLFSQLK---------------- 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                    +    +    A++I   I          S   K+ 
Sbjct: 308 -------------------YGNLIKVLIGKNEENEAQKIVKKI---------ISQYAKKK 339

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I+ +D  +L R    + ++            I    +++        IKDL++  R +++
Sbjct: 340 IKYRDFAILYRGNYQSRILEKAL----IKENIPYNISEKSSFFSRPEIKDLLSYLRVVIN 395

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQH 483
           ++D+ +F+ ++  P     +  + K+      +  ++++                 K ++
Sbjct: 396 RDDNHAFMRIVNIPSRQIGKTTLKKLEEWANKKHVSLFQASNNIEIKKFLNENTIKKIKN 455

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVL----DEFLN 534
            I  I +    +    P +    I+   +  +       +       I+ +      F N
Sbjct: 456 FISKIEKFTAWSC-LKPSNIIDDIVDDLEYEKWLSKFLKDPNKIKNSINNVHTLSQWFKN 514

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               ++     +L ++++ +               + V++MT+H +KGLE P VF++   
Sbjct: 515 MIKGDDFEKPMTLFQIVTRMTIRDILDDNIIKEQQDRVQLMTLHASKGLEFPAVFIIGMC 574

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +  ++                                   K +     EE  RL YVG
Sbjct: 575 EGILPNQ-----------------------------------KSIDNDNIEEERRLTYVG 599

Query: 655 MTRASDQLIIC 665
           +TRA  QL   
Sbjct: 600 ITRAKKQLFFT 610


>gi|237803037|ref|YP_002888231.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274271|emb|CAX11066.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT]
          Length = 634

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 174/547 (31%), Gaps = 118/547 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + + A Y+E  +    LDF+DL+  T  LL+  +    ++ +       +LIDE QDT+
Sbjct: 164 TRTVYAEYQEQLRAANALDFDDLLFLTEKLLRTPE----VQQEYANHWKALLIDEYQDTN 219

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L            +   +F VGD  QSIYS+ GA    +L  ++   +   
Sbjct: 220 HAQYLIAKRLAA----------AHNNIFVVGDPDQSIYSWRGANISNILNFEQDYSQAL- 268

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RS   IL   + +          +  S                  
Sbjct: 269 -------VVRLEENYRSCGTILEAANALIQNNSARLEKTLRSVK---------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          +   +T   D           A ++   ISN+            +
Sbjct: 306 -----------GPGDKIFCFTGKNDRDE--------AEQVLEEISNLHS---------YK 337

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I   DI +L R    +                               I+D++A  R   
Sbjct: 338 DIPLSDICILYRTNFQSQSFEAAL----LKRGYPYEIIGGISFYKRREIQDILAFLRLFS 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH----- 483
           +  D  +F   +           +  +    +     + +           +        
Sbjct: 394 NNYDMAAFERTISLKKCGIGATTLAALMNYAKTTDLPILQACWDVLEKKSIRLTKKQQQG 453

Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLR 538
               + + H++  +   C  H+F    +                 +  + L++ L  T  
Sbjct: 454 LFSYLTHFHQMEQLYGNCDLHEFINETIRITDYLSILKEDPETYEDRKNNLEQLLAETQT 513

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++S  +L   + +L           +++H+ +++MT+H +KGLE PVVFLV     + 
Sbjct: 514 WGKSS-ENLPGFLEDLALKSSAD--ETASSHDRLKLMTIHNSKGLEFPVVFLVGLEENLL 570

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H + K MH                                     EE  RL YVG+TRA
Sbjct: 571 PHANSKGMH----------------------------------ENIEEERRLCYVGITRA 596

Query: 659 SDQLIIC 665
            + L + 
Sbjct: 597 QEYLYLS 603


>gi|146307014|ref|YP_001187479.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
            mendocina ymp]
 gi|145575215|gb|ABP84747.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
            mendocina ymp]
          Length = 1209

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 148/1031 (14%), Positives = 300/1031 (29%), Gaps = 156/1031 (15%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
            +                + L ++          + LQ A        +    +       
Sbjct: 224  EQALAELKAPWLTWADELQLLLDAAVAAKQVDGKKLQ-ARFYNPWLAKLREWA-----GG 277

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST-----LASLTLAKY 132
              P+ ++ T  I      L E  K        ++          +       A    A +
Sbjct: 278  EEPRLDLGTGFIRLTPEGLAEAWKGEAPAHPALKAMALLKAQLDALPDPADAALRHAAAW 337

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            +   ++  K++   + F+D+++  +  L+  + +  +   I ++    LIDE QDT  +Q
Sbjct: 338  VRQRFDWEKRQRAEMGFDDMLVRLDAALQGSNGAR-LAEVIRRQFPVALIDEFQDTDPLQ 396

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + +  +L E        +     LF +GD KQ+IYSF GA+    LR +R          
Sbjct: 397  YRIFDTLYE-----VEANRGDCGLFMIGDPKQAIYSFRGADIHTYLRARRA--------- 442

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                   L  +FRS+  ++  V+ VF   E   G               +G  G  ++W 
Sbjct: 443  TLGRHYNLEKNFRSSQAMVDAVNGVFLRAEQRDGGEGAFLLRDDLPFIEVGAQGRGEVWS 502

Query: 313  QVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIGTDTIFSNGKKR-- 369
                  + Q  P    W    D  + +      +A   A  I  ++        G  +  
Sbjct: 503  V-----EGQAQPALTVWHLASDEPVAKGVYLDAMAAGAASEIVRLLDLGQCGQAGFIKDG 557

Query: 370  ---VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                ++  DI VLVR   +   I             SV  +D+  +      +DL+   R
Sbjct: 558  VLSALRPSDIAVLVRDFNEAQAIRGELAA---RGVRSVYLSDKDSVFAAQEARDLLLWLR 614

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                 + D      L S     +  ++ ++         + E   +        ++   +
Sbjct: 615  ACAEPDQDRPLRAALASATLGLALSELEQLN--------LDERTWERRVMQFRDYRQRWQ 666

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                L  + Q     +    ++G   G +   +         L E L           + 
Sbjct: 667  RQGVLPMLRQLLQDFELPQRLMGRDDGERVLTNLL------HLAELLQQAAAELDGELAL 720

Query: 547  LQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++ L   L    Q          ++   VR++T+H +KGLE P+VFL    +        
Sbjct: 721  IRHLGELLTGEGQAADEQVLRLESDEALVRVVTIHKSKGLEYPLVFLPFVCA-------- 772

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                  P  +  P       + +       D +   ++    E  RLLYV +TRA     
Sbjct: 773  ----FRPVDDKKPLQIHDGERRRLVLKADDDSLARAERERLGEDLRLLYVALTRARHACW 828

Query: 664  ICKH--SNTSNEKKSNQRTWYDMVYDSFHN--------DERVKKIKLTNSINKDEWIAYE 713
            +        + +K     +    +              +         +S       A E
Sbjct: 829  LGVADLKIGNGKKSRLHESALGYLLGGGLPLAASGELVNWLAPFASGLDSAVSPVPPASE 888

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                  E                +      +S ++ D + P  ++           ++++
Sbjct: 889  QRYRMIEEGQFVPHWRTPARRAAEHWWIASYSALRLDEDAPSQVSRHEDAAPDSPAMQNV 948

Query: 774  LSD--------------------NQTFNRGLIIHKLLQV--------IFTLPEHKRKNFI 805
            + D                     +  N G  +H LL++        +   P   R+   
Sbjct: 949  IDDEDPLLALAPLPASAQGLHRFPRGPNPGTFLHGLLEMAAQEGFATLAQDPHRLREALA 1008

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLL---------------ENPMMTTAMSCDS----- 845
                 +  + W       LL  +++ L                 P +             
Sbjct: 1009 RRCQRRGLQSWIDPLQDWLLALLSQPLPLAGADTVVLAQLTQYQPELEFWFEAREVDVRL 1068

Query: 846  ------YSEVSVSGKINCPKK--DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                    E+    +        + +  G ID +   Q   ++ +YK++     +  +  
Sbjct: 1069 LDQWVQQCELPGVARQPLRADTLNGMFKGFIDLVFEHQGRYYVADYKSNWLGSDDGAYTR 1128

Query: 898  Y---------THIAQLSIYEKILKDSYP--------NKSLVCLLI-YVSEPK---VFIIP 936
                       +  Q  +Y   L             ++ +   L  ++  P+       P
Sbjct: 1129 EAIEVAIVSHRYDLQYVLYVLALHRQLRLRLPDYDYDRHVGGALYVFLRAPQQGAYLARP 1188

Query: 937  QNKLNKAFAEI 947
              +L +    +
Sbjct: 1189 PRELIERLDAL 1199


>gi|254467915|ref|ZP_05081321.1| UvrD/REP helicase, putative [beta proteobacterium KB13]
 gi|207086725|gb|EDZ64008.1| UvrD/REP helicase, putative [beta proteobacterium KB13]
          Length = 1015

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 150/912 (16%), Positives = 302/912 (33%), Gaps = 120/912 (13%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEIN--KKSPDLK 97
            E  + T L+K   L+ + +++  E           T++ + +KNI  +++   KK+    
Sbjct: 208  EEESLTHLQKIFKLKDSIRSKKSE--LLHFIESIYTKQKSIRKNIKEEDLAFFKKNSVSN 265

Query: 98   EKLKKSQDEFIKIRDRFNTYKM--FKSTLASLTLAKYLNAHYEEAK---KKNCVLDFEDL 152
            +       +F      +    +   + +    TLA  L   Y   K    +N V+DF ++
Sbjct: 266  DIANVEWPDFECFEKEYYFLNISNLQQSDIIQTLAPILKEAYARIKLYFSQNKVIDFPEI 325

Query: 153  IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
             +     LK       ++  ++ + +HIL+DE QDT+  Q ++   LT ++         
Sbjct: 326  TLQALLALKNESGFTDLKSYLNIKYSHILVDEFQDTNKNQLQLFEYLTHEW-------GP 378

Query: 213  PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
              T F VGD  QSIY F  ++ +  L   +           K + I L ++ RS + ++ 
Sbjct: 379  ENTFFCVGDPMQSIYRFRQSDVRIFLDVIK-----NGVGKIKLNHIILSVNNRSKSRLIH 433

Query: 273  VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
              +  FS     Q +   S              G++              + +       
Sbjct: 434  WFNSRFSKIFTEQNIDNGSIQYQLCNPRIEDDSGSINFLSYSSESSSKSSDIE------- 486

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                         A  I   I                  Q + I V+ R R     I   
Sbjct: 487  -------------AELICRQILA---------------SQHESIAVIARSRNHLKPIVSY 518

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
             +       I +   +   L +H  ++D++AL   I    D   ++  ++SPL   +  D
Sbjct: 519  IKKNYAKQ-IPINAIELESLINHQCVQDILALTLAIFDFSDRTHWIATIQSPLCGLAIKD 577

Query: 453  IFKICTQRHETETVY---EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
            +  +   + E        E + +  +    + +++IK I             +    +  
Sbjct: 578  LHILFANKDENIWKLINSEKVNELNSDSQKRIKNLIKIIEIHYSSMHSAKWSEIIRTLWV 637

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
               G +        E I+ +D +L      + N           ++    T+    ++N 
Sbjct: 638  DLAGIKSLY---VKEDIEYIDYYLRILQNFDTNEID----KEVLIKTVTETMVSDVNSNK 690

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              V  +T+H +KGLE   V +               ++       +  I           
Sbjct: 691  KAVSFLTIHKSKGLEFDHVIIPCIDKSTRP-NIPSLVNFDHMDGANKNISSIKINDDVIY 749

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
            ++     +  K     E  RLLYV +TRA +QL +    N + +K +     +D      
Sbjct: 750  SLHGYHEQKNKIREHNELKRLLYVAVTRAVNQLDLIAEINQTTKKNTFLHFLWD------ 803

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
                                   ++ +  P+N  ++   +  +          L   I +
Sbjct: 804  -----------------------DFYSTDPQNIEVDAPSSKYEKFSPNLFNIPLSEYIND 840

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSY 808
                     P ++  K     E           G+IIHK L+++   L  H    FI   
Sbjct: 841  KKKSLDKFLPISVKEKYSIETEE-------IYVGIIIHKYLELLHKNLKIHHHVQFIEKM 893

Query: 809  CTKNAKLWPAKEYKNLLLS---ITRLLENPMMTTAMS--CDSYSEVSVSGKINCPKKDII 863
                         + +  S   I  + +       +    +   E+    KI+ P KD  
Sbjct: 894  LNSLNVDKSLNHKEIVNESMTCINNIHQTESGQKILKKYDNDQCEL----KISVPNKDQT 949

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
             + R+D+  +     +I +YK +H    ++  +   +  QL+ Y       + +  +   
Sbjct: 950  -NYRVDRTFLINNERWIIDYK-YHKEEHKLNSLALNYKNQLNRYA----SFFNDHKIRQF 1003

Query: 924  LIYVSEPKVFII 935
            + ++ + ++  I
Sbjct: 1004 IYFLKQGELIEI 1015


>gi|300726045|ref|ZP_07059503.1| putative UvrD/REP helicase domain protein [Prevotella bryantii B14]
 gi|299776652|gb|EFI73204.1| putative UvrD/REP helicase domain protein [Prevotella bryantii B14]
          Length = 1115

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 140/902 (15%), Positives = 291/902 (32%), Gaps = 96/902 (10%)

Query: 67   SLLSSFFLTQKFTPQ----KNIITQEINKKS--PDLKEKLKKSQDEFIKIRDRFNTYKMF 120
            SLL+S  L     P+    K+   +++ + +   +L + LK ++++   I     + K+ 
Sbjct: 275  SLLTSRVLKGMEDPKAWVKKSGQNRDLAQTAVNEELFQLLKFAEEKRPTIWRMAQSAKLT 334

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEI 177
               +  L L   +     E  ++        L+ +T  LL    +   S +I  KI  ++
Sbjct: 335  MRHINQLRLLNSIEDKVREMNQEANRF----LLSDTQTLLHSLIQNSDSPFIFEKIGTQL 390

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             HI+IDE QDTS IQW+  + L E+       +        VGD KQSIY +   + + +
Sbjct: 391  EHIMIDEFQDTSTIQWQNFKVLLEETMSHGKEN------LIVGDVKQSIYRWRDGDWRLL 444

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
               +        N  Q+  I  L  ++RS  +I+   +  F +  + +     +   +  
Sbjct: 445  NEIQNQF----DNNEQQLQIQPLMYNYRSNRNIVEFNNLFFRVAADYEYNQLKNENPLEA 500

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
               ++                      +  +       L  E  +       A TI+N+ 
Sbjct: 501  EQMKLAY----------ADVEQRVPEGKPAAGKVEIHLLADEDWSVRTLELTAQTINNLH 550

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                         +    I +L R   +   I      +KN   I +V ++ F L   +A
Sbjct: 551  DQG----------VPYNKIAILTRTNGNIQSIADEF--MKNYPSIPLVSDEAFRLDASMA 598

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLF-----NFSEDDIFKICTQRHETETVYEYIQK 472
            +  +M     +    D L+   ++KS          ++  +F I +     E     I  
Sbjct: 599  VNVIMDALHLLTHPNDILTRANLVKSYRKIVDAEGVTDTQLFVIPSIDDRQERENALIAH 658

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                  S+F      +             D    +         F     ++    +  F
Sbjct: 659  MNQFLPSEFVETSDEL-------VRMPLFDLVERLFAL------FALHKLSDQSAYICAF 705

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +       +  + +   ++E +              N VRI+++H +KGLE   V +  
Sbjct: 706  YDTLNHFITDYTTDIDAFVTEWDNRLHLKTIQSDE-INGVRILSIHKSKGLEFDHVIIPY 764

Query: 593  TGSQV-FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++     +I         N  P +P+   + +    I      H       +   LL
Sbjct: 765  CDWRLEKVGTNIWCEPQEEPFNRLPLVPVDFSKKEMMGTIYEHDYLHEHLQNVVDNMNLL 824

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YV  TRAS  L I       + + +  +        +        +     SI+K +   
Sbjct: 825  YVAFTRASRNLFIIGRQGNESMRSAVIQEAMYDDCWTHAKVPVFIEGLPDKSIDKKKVKK 884

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
             + +    +      E  I     ++K    +F       +       + ++ K      
Sbjct: 885  TDSAEEPIDILFEYGELDIASEEKQEKQSDNVFKQHIEPESLQITNYVNKVEFKQSNKSR 944

Query: 772  SLLSDNQ---------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK-EY 821
              +                 G ++H L   I T                +  ++      
Sbjct: 945  DFIGGEDDDEFIRQRNYIQMGNVLHNLFSTIHT---ADDIESALQQLELDGVIYDKNITK 1001

Query: 822  KNLLLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPKKDIIIS-----GRIDQISIS 874
            + +   + + LE   ++   S     ++E S+    +   ++  I+      R D++   
Sbjct: 1002 EKIEKMLRKRLETKEVSDWFSPRWTLFNECSILYVEDEKDEEGNITSKVQERRPDRVMTD 1061

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS-YPNKSLVCLLIYVSEPKVF 933
               + + ++K               +  Q+  Y  +L+   YP   +   L +V + ++ 
Sbjct: 1062 GNEMIVVDFKFGR--------YKEEYDKQVREYMSLLQSMGYPQ--VKGYLWFVYKNEIK 1111

Query: 934  II 935
             +
Sbjct: 1112 EV 1113


>gi|42524524|ref|NP_969904.1| exonuclease RexA [Bdellovibrio bacteriovorus HD100]
 gi|39576733|emb|CAE80897.1| probable exonuclease RexA [Bdellovibrio bacteriovorus HD100]
          Length = 1007

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 142/934 (15%), Positives = 306/934 (32%), Gaps = 123/934 (13%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQA---SQTQCIEERFSLLSSFFLTQKFTPQKNI 84
            +     + +S ET N   +  A  +      +     E  F+ L S F      P    
Sbjct: 168 GALRRVCLEISQETSNDKWVDYAGAMTGFDWNASNGDWEGFFARLES-FWENISKPVFRK 226

Query: 85  ITQEINKKSPDLKEKLKKSQDEFIKI-RDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKK 142
            T   +    +  E+L+   D  +   R R   +   +   A    LA+     + + K 
Sbjct: 227 ATPPFSLSLNEELEELRDRVDRLLAEPRYRPEYWDRHEKNCALFEELAQNFCRDFMQTKL 286

Query: 143 KNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           ++ +L   DL    + + L + + +     K  QE +  ++DE QDTS +Q E++R L  
Sbjct: 287 ESGLLSMSDLETLASKITLDQPEAAV----KFSQEWDFWMVDEYQDTSPVQVELLRHLVG 342

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +           + +F VGD +QSIY F GA  +    +    + +  +   K       
Sbjct: 343 E-----------KPVFIVGDPQQSIYLFRGARSEVFREKVAEIEAQQGDVQVKL------ 385

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
           +++RS+ ++L   +  F+   +            +           V + + V+S+   +
Sbjct: 386 VNYRSSPEVLEFFNHYFTRLGSQFAAMTPDEKKPKKGP-------EVPVVQVVLSETGDE 438

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E   +                     I  ++   T            + I VL R
Sbjct: 439 DETSAEILAT------------------VARIQELLQAGT----------SPEQICVLGR 470

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             +    I  + +     Y + +  +      +   + D +A+ +F+++  D+ +FV +L
Sbjct: 471 THRTLEDIAKVAQE----YGVPLQLHSGSGFYERREVLDALAVLKFLVNPHDNANFVALL 526

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           +SP     + +I   C       + ++  QK  +         ++ +  L+  A+     
Sbjct: 527 RSPWLALPDSEILSYCHSFRH--SFWKEAQKNLDQKPEIHP--LRVMKALLAQAEVKGLS 582

Query: 502 DFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPP 559
                 L                     L + ++   + E+   ++ L  L S LE    
Sbjct: 583 WTLKKALIDLGLFDYSARIDSTGRREANLWKVVSLLSQEERRPGFNYLDFLDSSLETLST 642

Query: 560 TIKRAHSA-----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 +          V  MTVH +KGL+   V L   G+   +           +   
Sbjct: 643 DEGGEDADATPVIEPKRVNFMTVHASKGLQFDQVILPGMGNDPRASHAPVLSIHEKTGLW 702

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
              +     Q+ + + +   +++ L+K   EE+NR+LYV +TRA   + +        + 
Sbjct: 703 SLKVRNEETQAMAGSVLADQIVEELRKRETEEFNRVLYVALTRAKSGVTLLWDKKVGKKS 762

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                                  + L   +++++  +Y   + +P+   +  ++  ++ +
Sbjct: 763 -----------------WAAHCPLNLEEGLHEEKDFSYVVRSENPQPVKMSEQDLAEKDL 805

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
             Q   +         + E                   L +      +G   H+L + + 
Sbjct: 806 RPQWQAEASEKRKYISVTELVTPEGVQAGGGYTPKASQLGAGLARAQQGTNAHRLFEALK 865

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
                +                  ++ K  L  + +  E P++         +E  V   
Sbjct: 866 FTSFDEL------------LKISDEDLKKPLEFLAKTPELPLLRII------NEGFVEWG 907

Query: 855 INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                K+ ++ G+ID   +    +++ +YKT      +          QL  Y   L   
Sbjct: 908 FALKYKEALMQGQIDLWGVVDGTLWMVDYKTGSQRYSDTA------FRQLEAYTWALYRM 961

Query: 915 YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
               ++      V    V+ + +    +A   + 
Sbjct: 962 KYLDNVQQ----VKLAVVYPVDEVVKIEALGSLK 991


>gi|325971006|ref|YP_004247197.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324026244|gb|ADY13003.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 672

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 98/587 (16%), Positives = 185/587 (31%), Gaps = 120/587 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L + YE+  K    LDF+DLI+   DL +K      +   +     HIL+DE QDTSL Q
Sbjct: 165 LYSEYEKHLKAYNALDFDDLIMKPLDLFEK---RPEVLEALRSRYTHILVDEFQDTSLSQ 221

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + ++  L ++           R L  VGD+ QSIYS+ GA  + ++  +R   +R     
Sbjct: 222 YRMVELLAQE----------SRNLCVVGDDDQSIYSWRGANYENLVMFERDFPERLE--- 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                ++L  ++RST  IL   + +    +  +     +           G+  +++L  
Sbjct: 269 -----VKLERNYRSTGTILEAANSLIVNNQVRKEKKLWTD---------SGKGSSIRLIH 314

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
               + +                          A  IA  I        +    + R   
Sbjct: 315 PANDEDE--------------------------ASVIADEI-------LMIHKKEDRP-- 339

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  VLVR       +         +  I           D   I+D+++  + I +Q+
Sbjct: 340 FSDFGVLVRTNG----LIDSLETKFTERGIPSQVTGGQSFFDRKEIRDIISYLKVIANQD 395

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY--------IQKFANCGISKFQH 483
           DD++ + ++ +P        + K+         ++Y            +         + 
Sbjct: 396 DDINLLRVINTPRRGIGRTTLEKMRKVADDHHCSLYSALTLMSVATDGQIKEGMQKTLKR 455

Query: 484 VIKYIHELIHIAQFCSPHD--FFTLILGAKKGRQQFISRFGNE------VIDVLDEFLNF 535
              +I E  H               ++     +    +   +        +  ++   + 
Sbjct: 456 FADFIEEYHHQLFETRTQRNMVLRTLIQEIGYKAYLEAEHPDNENVVAYKMKGINMLCDM 515

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             R E+N  ++   +   L +     K +    +  ++ +MT+H +KGLE   V+L    
Sbjct: 516 LARWERNPENAKASIFDYLNRISLAGKESTEQEDAGKIALMTIHASKGLEFDTVYLAGVE 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            Q   H                                         +  +E  RL YV 
Sbjct: 576 DQYIPHARAI---------------------------------EENPANIDEERRLFYVA 602

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           +TRA   LII                    + +        +     
Sbjct: 603 ITRARRSLIISTCEKRKKGHDEVTSLPSRFLEEIPKALFDEEDPAKE 649


>gi|315224517|ref|ZP_07866344.1| UvrD/REP helicase subfamily protein [Capnocytophaga ochracea F0287]
 gi|314945538|gb|EFS97560.1| UvrD/REP helicase subfamily protein [Capnocytophaga ochracea F0287]
          Length = 1060

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 131/924 (14%), Positives = 270/924 (29%), Gaps = 123/924 (13%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL-----LSSFFLTQKFTPQKNIIT 86
              ++ L  E G          L +       +            +  L  +     +   
Sbjct: 239  QDFMQLMCEHGLDKGAFNGGHLYKFFDNLTADNPKEPSWGSGWQNNLLEGEPLYSGSAGK 298

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +        L+E +        K              +  L L   +    E  K++  +
Sbjct: 299  KYDTALIDSLQEMIANLFLAIKKAFGALAFANNALRYVVPLALLNRIQKEIETIKEEENI 358

Query: 147  L---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
            L   +F  +I +          + +I  +I ++  H  IDE QDTS++QW+    L  + 
Sbjct: 359  LPIWEFNGVISSEL----SNQPAPFIYERIGEKFRHYFIDEFQDTSVLQWQNFIPLILNA 414

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
               +  ++   ++  VGD KQSIY + G + +   +   +          K  + +L  +
Sbjct: 415  VQSE-VNNKCGSVLLVGDAKQSIYRWRGGKAE---QFMSLYNNEVNPFRIKGEVKDLNEN 470

Query: 264  FRSTADILTVVDKVFS------IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            FRS   I+   +  F         +  + L E+S                      +   
Sbjct: 471  FRSLEAIIDFNNHFFKFAGDLFQSDTYKKLYENSIQDYPKNKRDQSLPEGYFNLSFIEVG 530

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
             +     +        + +            I   I +                  KDI 
Sbjct: 531  EEEMPTEE-----DNSNVVVLSPRKRSYCEAILEKIEHANRAGAAD----------KDIT 575

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +LVR  ++   +       + +    V+  D  +L +  +++ L+ L R +   E     
Sbjct: 576  ILVRTNREGAAVASFLSEQQRN----VISPDSLLLKNVASVQFLITLLRLLYHPESKELK 631

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
            + +L   L                  +   +     +          +      I +   
Sbjct: 632  LQLLFDYLR----------------FKETKDPHLFLSKYVEEPINTFLADFQFSIELFNQ 675

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
             S ++   L +                    L  F++     +      L + +   +  
Sbjct: 676  YSLYEGVALAVNCFG--------LARTSDAYLTHFMDIVFDFKNARKGGLADFLEFWDDQ 727

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
               +  +     N + +MTVH +KGL +PV+      S++      K    +     +  
Sbjct: 728  QEKLSISSPEGLNAITVMTVHKSKGLSAPVIIYAFADSKLIDTHTEKLWFPVDDEQFNGF 787

Query: 618  IPIWIPQSK---SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
              + +  +K   + +    +L+  L +    +   +LYV MTR    L +    +  + +
Sbjct: 788  DYLLVNSNKSLVNYDPQAEELMTQLHEQNLLDQLNVLYVAMTRPESFLYVITSLSKGSAE 847

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                     +V +   ND+ V+    +                        ++E      
Sbjct: 848  TYGTLFKKFLVENGQWNDDVVEYTFGSAVFP-------------------RKKEKEATEE 888

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
                  K    P                      +L       +   RG +IH+L   I 
Sbjct: 889  SPIPFQKGWQQP--------------NYKIATGASLLWDTHQQEALERGNLIHELFSKIT 934

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
                      +             K+Y+ L   + RLL N ++    S D   E     +
Sbjct: 935  Y--ATDLDTVLNDAL--QEGTITTKQYELLQPQMVRLLNNNILAPFFSKDY--EYFTERE 988

Query: 855  INCPKKDIIISGRIDQISISQQ--NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                  +     R D+++ +     ++I +YKT     Q        +  QL  Y++ L 
Sbjct: 989  FIDANGNYF---RPDRLAYNPTTREVYIIDYKTGQPSDQ--------YRTQLQHYQQNLT 1037

Query: 913  DSYPNKSLVC-LLIYVSEPKVFII 935
                   +    L+Y+   +V  I
Sbjct: 1038 AI--GWQVKGKYLVYLDLGEVVKI 1059


>gi|213971722|ref|ZP_03399828.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato T1]
 gi|301382491|ref|ZP_07230909.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062439|ref|ZP_07253980.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
           K40]
 gi|302133040|ref|ZP_07259030.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213923540|gb|EEB57129.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato T1]
          Length = 669

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 97/608 (15%), Positives = 199/608 (32%), Gaps = 120/608 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  +  HY+   K    +DF+DLI+    L ++      +  K   ++ ++L+DE QD
Sbjct: 162 QTAAIVYTHYQRTLKAYNAVDFDDLILVPVKLFQEHPD---VLEKWQNKVRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L            +      VGD+ QSIY++ GA P+ ++  K      
Sbjct: 219 TNASQYLLVKLLIG----------TRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYP-- 266

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST+ IL   + + S   +A                       
Sbjct: 267 ------SLKVVMLEQNYRSTSRILRCANVLISNNPHAFEK-------------------- 300

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            QLW ++    +                + +  +    A R+A  I  +           
Sbjct: 301 -QLWSEMGHGDEI--------------RVIRCRNEDAEAERVAMEILTLH-------LRT 338

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            R     D  +L R      LI    +     +++    +          +KDLMA  R 
Sbjct: 339 DRP--YSDFAILYRGNYQAKLIELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           +++ +DD +F+ ++  P        + K+         ++Y   ++        +    +
Sbjct: 393 LVNPDDDNAFLRVINVPRREIGSTTLEKLGNYATERKVSMYAATEEIGLGEHLDSRYTDR 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
            Q   +++  +        P      ++              +E      +  +   +  
Sbjct: 453 LQRFKRWMDGVRQQCAQNDPIAALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEA 512

Query: 536 T---LRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
               L  ++    +++E I +L       ++    +    V++MT+H +KGLE P VF++
Sbjct: 513 LKNTLEKDEEGGMTIEEAIGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIM 572

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      ++  T EE  RL 
Sbjct: 573 GMEEEILPH-----------------------------------RSSIEADTIEEERRLA 597

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA   L     +      +         + +   +D   +    T +  K     
Sbjct: 598 YVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGN 657

Query: 712 YEWSTHHP 719
              +    
Sbjct: 658 TALADIRA 665


>gi|77462643|ref|YP_352147.1| ATP-dependent DNA helicase Rep [Rhodobacter sphaeroides 2.4.1]
 gi|77387061|gb|ABA78246.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           2.4.1]
          Length = 783

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 105/635 (16%), Positives = 196/635 (30%), Gaps = 122/635 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y++  ++    DF DL+++   + +       +  +  + + +IL+DE QDT++ 
Sbjct: 195 ELYDQYQQRLRELNATDFGDLLLHVLTIFQSHPD---VLEQYRRWLRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          + R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYMWLRLLAQ----------THRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL     + +      G +                     LW
Sbjct: 296 --GAQVIRLEQNYRSTPHILAAASGIIAANAGRLGKT---------------------LW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +   ++     ++D   +       AR I   + +          G     
Sbjct: 333 -------TERQEGEKVRLIGHWDGEEE-------ARWIGDEVESFQRG-----RGGLGPF 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D+ +LVR                    +           + L I+D MA  R  +S 
Sbjct: 374 RLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRLAVSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
           +DDL+F  ++  P     +    +I    R    ++ E              G  + +  
Sbjct: 430 DDDLAFERVVNQPKRGLGDKAQQEIQREARAHGTSLLEGARSLLARGGIGGKGAGQLRAF 489

Query: 485 IKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           +  +       + +          IL        + +    E    ++ L E +    + 
Sbjct: 490 VDGMDRWHGTTLDRDHDHIRLAEQILDESGYTAMWQADKTPEAPGRLENLKELVKALEQF 549

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     ++     + ++V IMT+H AKGLE PVVFL      +F 
Sbjct: 550 EN--------LQGFLEHVALIMENETEESVDKVTIMTLHAAKGLEFPVVFLPGWEDGLFP 601

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 602 SQR--------------------------------AMDETGLKGLEEERRLAYVGITRAE 629

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               I   +N     +     W   +   F ++     +++                   
Sbjct: 630 QLCTISFAAN-----RRVYGQWQSQLPSRFIDELPSAHVEVLTPPGLYGGGYGAAGMASS 684

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                 R +       ++   +    P+       
Sbjct: 685 LEAQALRADVYDSPGWKRMQTRAGGRPMAQPRESR 719


>gi|326334227|ref|ZP_08200450.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1]
 gi|325948018|gb|EGD40135.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1]
          Length = 1074

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 135/1006 (13%), Positives = 265/1006 (26%), Gaps = 148/1006 (14%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             + +   +           V  +  Y  L+++       + ++ L   +  +  +     
Sbjct: 147  ADATRYQLAARAVARHTHPVEKLTDYPKLAVQQLLALDSELSEHLVDPATLRAYDRNERS 206

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
            L +                    +  DL  +L   +    K+                L 
Sbjct: 207  LFAL-------------------EVADLNAQLADGKRVKTKLTKVEKAIDAIDKRYELLD 247

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            L       Y   K +  ++DF D I     L  +      I      +   +L+DE QDT
Sbjct: 248  LVDG----YRRLKDRLGLMDFSDQIALAARLAVETPEVGEI---ERGKFKVVLLDEYQDT 300

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S+ Q +++  L  D             + AVGD  Q+IY + GA    +L   R    R 
Sbjct: 301  SVAQAQMLARLFGD----------GHPVTAVGDPNQAIYGWRGASVSNILEFGRDFPTR- 349

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS------EDSTTTIRHRSSRI 302
                 +     L ++ RS A IL   + + +     +               +R      
Sbjct: 350  ---DGRRPSYSLTVNRRSDARILATANHLAAQLYEGREKERLVAAEGARDGEVRVHVHET 406

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 + L ++V+  H++    ++    +  +S       ++ AR I   I  + G    
Sbjct: 407  YDDELLWLADKVIEAHEAVGEWKEIGVLTRDNSQAAAVFDALTAREIPVEIVGLKG---- 462

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   +++  ++  +V   +    +T     L            R +       +DL 
Sbjct: 463  -------LLRLPEVAEVVATMELLHDVTANAALLTLLAGPRWAIGPRDLAILGRRSRDLA 515

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             +        D       L++ +      +I  +     +          ++     +F+
Sbjct: 516  GVVGGAEEFAD---IERQLEAAVEGTDPTEIPSLNDALEDPGD--AADYDYSPQARERFK 570

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
             +   +  L   A      D    I+       +  +          D LD F+      
Sbjct: 571  LLADELRGLR-RAVNEPLLDLVRRIIDVTGIDVELAASVSPAASARRDNLDLFVQAVAEF 629

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            E          +    +      +       +  + V+++TVH AKGLE  VVFLV    
Sbjct: 630  EGLDGQVTLAALLAYLEAEDEYGQGLDVATPSEADSVKLLTVHRAKGLEWDVVFLVGVTH 689

Query: 596  QVFSHKHIKKMHI-----MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            + F     +   +     MP+        +        ++I  +L+   K+  + E  RL
Sbjct: 690  KKFPTGQTRSSWLTVPSVMPAALRGDRDDLPQLHGHDADSI-DELLAERKEHERVEELRL 748

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWY----------------DMVYDSFHNDER 694
             YV  TRA     +     + + K+    + Y                         +E 
Sbjct: 749  AYVAWTRARHIQFVSCWRWSPSLKEGRGPSVYVEKTREALLQWGAKPDRWADVVVKGEEE 808

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLERE-------------------------ET 729
                 L   +               E   L RE                           
Sbjct: 809  SPYAALEVDLPWPINHHTPEVERRLEAARLVREVGPGPDDLDDLTLLETVNQWDEEIERL 868

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            + +   E+     +  P          L    +              +     G   H  
Sbjct: 869  LTEAERERAPEVVVPLPSSLSATAMSKLRDDPLGFAADLVRPMPRKPSSQARFGTRFHAW 928

Query: 790  LQ----VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
            ++                         +           L  +    E            
Sbjct: 929  VEARFGQQDLFDPDDLPGRADHGIEDESG----------LEEVIAAFEQGPFAD------ 972

Query: 846  YSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQL 904
                 V           ++ GRID +         I ++KT+     +          QL
Sbjct: 973  RPPFRVEAAFAIVLAGQVVRGRIDAVYQEPDGSFLIVDWKTNQSQNADP--------LQL 1024

Query: 905  SIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
            ++Y     +    P   +     YV   ++   P          I 
Sbjct: 1025 ALYRVGWAELMGLPLSKVRAAFYYVRSGRLVEPPGLADRGELERIL 1070


>gi|324999173|ref|ZP_08120285.1| ATP-dependent DNA helicase PcrA [Pseudonocardia sp. P1]
          Length = 829

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 93/678 (13%), Positives = 186/678 (27%), Gaps = 166/678 (24%)

Query: 101 KKSQDEFIKIRDRFNTYK-MFKSTLASL-TLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +    +   +++   +     +            +   Y+   ++    DF+DLI+ T  
Sbjct: 162 RALAAQISNLKNELLSPDDAAERAGTDHERRIAEVYGVYQSRLRQANAFDFDDLIMETVS 221

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL +      +     +   H+L+DE QDT+  Q+E++R L             P  L  
Sbjct: 222 LLDRMPA---VAEYYRRRFRHVLVDEYQDTNHAQYELVRQLVLPATE----KGKPAELCV 274

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  QSIY+F GA  + ++  ++               I L  ++RS+  IL+  + V 
Sbjct: 275 VGDSDQSIYAFRGANIRNIIEFEQDFP--------DARTILLEQNYRSSQTILSAANAVI 326

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +     +     S                               + ++       +   +
Sbjct: 327 ARNPERRDKRLWS----------------------------DAGDGERVVGYVADNEHDE 358

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  +A  I  ++ +            +  DI V  R    + +   +      
Sbjct: 359 -------ASFVAREIDRLVDSGE---------YRNSDIAVFYRTNNQSRVFEDVF----L 398

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              +           +   I+D +A  R + + ED +S   +L  P     +     +  
Sbjct: 399 RVGMPYKVVGGVRFYERREIRDALAYLRVLSNPEDTVSLRRILNVPKRGIGDRAESVVAE 458

Query: 459 QRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQF-CSPHDFFTL 506
                 T +    + A    +K               ++ + +L  +        +    
Sbjct: 459 YAERERTSFSRALRTAAEEPAKLPALATRSQKNIAGFVRMLDDLGELVDRGDDTAEILEA 518

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN--------------------- 542
           +       ++  +    +    +D L E +        +                     
Sbjct: 519 VYARTGYVEELQASEDPQDGTRMDNLAELVTVAREFAGDAAVADLEALSTDPDAGGGAIG 578

Query: 543 ------------------------------SYSSLQELISELEQYPPTIKRAHSANHNEV 572
                                            SL   +  +             +   V
Sbjct: 579 SGAAPGEDPAPAAGAPASPGDDVDTDAGAPEPGSLAAFLERVALVADADSIPDD-DTGVV 637

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+HTAKGLE PVVFL      +F H                                
Sbjct: 638 TLMTLHTAKGLEFPVVFLTGWEDGIFPHLRTLGDP------------------------- 672

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                        E  RL YVG+TRA  +L + +    S   + +       + +     
Sbjct: 673 ---------KELAEERRLAYVGITRAEQRLYVSRAIVRSAFGQPSTNPASRFLDEVPAEL 723

Query: 693 ERVKKIKLTNSINKDEWI 710
              ++ +      +    
Sbjct: 724 TEWRRTEEQLVAERPSAP 741


>gi|78188740|ref|YP_379078.1| exodeoxyribonuclease V, beta subunit [Chlorobium chlorochromatii
            CaD3]
 gi|78170939|gb|ABB28035.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Chlorobium
            chlorochromatii CaD3]
          Length = 1207

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 126/999 (12%), Positives = 289/999 (28%), Gaps = 174/999 (17%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER----FSLLSSF 72
            Y +L  L     + + + +S            +A  L+               F+L + F
Sbjct: 223  YAELCRLWQSDGAAVRELLSTDKGLSRAADYYRADKLELLFAGMEEFIAGGNPFNLFADF 282

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
                          +  +   P                 ++       +       L ++
Sbjct: 283  QKFATSGIAAGTKPKGTSPDHP------------LFACAEKLLQAVQKRYVALKSELVQF 330

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                  + K+K     F+DL+ +  D L+  +    +  ++       LIDE QDT  +Q
Sbjct: 331  YQRELPKRKRKANFRFFDDLLSDLADALQAPERGVALAQRLRSTYQAALIDEFQDTDPVQ 390

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + + +++  D             LF +GD KQ+IYSF GA+    ++  R  +       
Sbjct: 391  YIIFQTMYADSDAP---------LFLIGDPKQAIYSFRGADIFAYMQAARAVEAS----- 436

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                   L  ++RST  +L   +++FS                  ++         +   
Sbjct: 437  ---RRFTLSENWRSTPQLLNAFNQLFSN--ERLPFIYPDIIYHPLQAGNPDVANGEESAP 491

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
             +            E   +  D L  E   ++ A   A  +  ++    I    +   + 
Sbjct: 492  ALQFY-------LLEGDDAKGDVLSVEQGEALAAEATAGELYRLLQAGEIIGGKQ---VA 541

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            A D  V+VR       +    +       I+ V      +      ++L  L   +    
Sbjct: 542  AGDCAVIVRTHAQAAQMVAALQ----RRGIAGVVRSDKSVFATREAEELRQLLIALADPA 597

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
             ++     L + +   S DD  ++                        +  V++      
Sbjct: 598  HEVKVRSALITDILGRSGDDCAELLAD------------------EVAWLQVLRRFRHYH 639

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            H+ Q          ++  +  R + ++     G   +  +   +    R E       +E
Sbjct: 640  HVWQHRGVMVMSRELMADEGVRGRLLASPDGMGERRLTNVLHCIELLHRQEHEHGFGCEE 699

Query: 550  LISEL-------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            L+          ++     +    ++   VRI+TVH +KGLE P+VF     + V + + 
Sbjct: 700  LLQWFSERISLQDELQEEYQLRLESDEAAVRIVTVHASKGLEYPIVFCPFLWNSVGNRRD 759

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                             +W       +           + +  E  RLLYV +TRA  + 
Sbjct: 760  EVVSFHNE---------VWQLVKDFGSPERDRHRVLAGRESLAEQLRLLYVALTRAKYRC 810

Query: 663  IICKHS------------NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             +                + S+  + + +   ++  +        +K++L +   +    
Sbjct: 811  TVLLARIKSEASAFNYLLHASDATRQSNKVVLELEQEMKGISSEERKVRLHDIAKQSAGA 870

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKK---------------------------L 743
                     E   L+ +  + +    + +  +                            
Sbjct: 871  IGVRQLSRVEIEALKEQPRLVRQRSAEPLHLRHFAGTVDGSWRVASFTSFSRHESTSTHF 930

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
             SP   D +E      ++       + +S+ +  +    G+++H L + +          
Sbjct: 931  ASPELPDRDEVRSSTSASTMQPTLPSEQSIAAFPKGARAGILLHALFEELNFANPTDEAI 990

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVSGK 854
                       ++P      L+  +  +L+ P          + T  +    +E+     
Sbjct: 991  AERVTEELARSIYPLSWQSTLITIVQAVLQTPLAALDGSTFQLGTLHAKSWITELEFFFP 1050

Query: 855  -------------------------------INCPKKDIIISGRIDQISISQQNIFIFEY 883
                                           ++      ++ G +D +  S    ++ ++
Sbjct: 1051 LRFINSKELSALLTRHGVLPGGIALADMVEVLDFKPVRGMVMGFMDMVFESGGRYYLLDW 1110

Query: 884  KTHHHVPQEIEHIPYT---------HIAQLSIYEKILKD 913
            K+++      ++             +  Q  +Y   L  
Sbjct: 1111 KSNYLGASPADYTLEAMGRAMQEHLYPLQYLLYMVALHR 1149


>gi|58584193|ref|YP_203209.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625962|ref|YP_453334.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58428787|gb|AAW77824.1| DNA helicase II [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369902|dbj|BAE71060.1| DNA helicase II [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 728

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 86/555 (15%), Positives = 182/555 (32%), Gaps = 86/555 (15%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +       + + + A Y++   ++ +LDF +L++  ++LL+       +   
Sbjct: 154 RRPQHIQPEPNDDWTEVRRQVYAAYQDRCDRSGLLDFAELLLRAHELLRDTPA---LLAH 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  +             +F VGD+ Q+IY + GA
Sbjct: 211 YRARFREILVDEFQDTNAIQYAFVRVLAGE----------SGNVFVVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               + L  ++RS+A+IL   + V +   +  G      
Sbjct: 261 KVENVQRFLKDFP--------GAQTVRLEQNYRSSANILGAANAVIAHNPDRIGK----- 307

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           +       + ++ + +       AR +   
Sbjct: 308 ----------------QLW-------TDSGDGDPIDLYAAYNEVDE-------ARYMVER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 ++ VL R    +  +           ++          
Sbjct: 338 ARQWVRDGG----------SYGELAVLYRSNAQSRALEEAL----ISAQLPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY-- 469
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R    +++E   
Sbjct: 384 FERAEIKDALAYLRLLTNRSDDAAFERAVNTPTRGIGDRTLDEVRRLARANALSLWEAAM 443

Query: 470 ----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
                   A    +     +  + +L          +    +L     R+ +        
Sbjct: 444 LCTQQNTLAARARNALATFLSLVGQLHAETGEMELAERIDHVLMRSGLREHWAKESRGGL 503

Query: 521 FGNEVIDVLDEFLNFTLRN---EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMT 576
                 + LDE ++   R    +      + EL++ L        +    A    +++MT
Sbjct: 504 DSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASLEAGEGQAQAGEEGMQLMT 563

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H+AKGLE P+VFLV     +F      +                    +      ++  
Sbjct: 564 LHSAKGLEFPIVFLVGLEDGLFPSARSLEERGRLEEERRLAYVGITRARQKLVLCYAESR 623

Query: 637 KHLKKSTQEEYNRLL 651
           +   +      +R L
Sbjct: 624 RIHGQDNYNVPSRFL 638


>gi|221638499|ref|YP_002524761.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           KD131]
 gi|221159280|gb|ACM00260.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides
           KD131]
          Length = 786

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 105/635 (16%), Positives = 196/635 (30%), Gaps = 122/635 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y++  ++    DF DL+++   + +       +  +  + + +IL+DE QDT++ 
Sbjct: 198 ELYDQYQQRLRELNATDFGDLLLHVLTIFQSHPD---VLEQYRRWLRYILVDEYQDTNVA 254

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          + R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 255 QYMWLRLLAQ----------THRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 298

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RST  IL     + +      G +                     LW
Sbjct: 299 --GAQVIRLEQNYRSTPHILAAASGIIAANAGRLGKT---------------------LW 335

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +   ++     ++D   +       AR I   + +          G     
Sbjct: 336 -------TERQEGEKVRLIGHWDGEEE-------ARWIGDEVESFQRG-----RGDLGPF 376

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D+ +LVR                    +           + L I+D MA  R  +S 
Sbjct: 377 RLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRLAVSP 432

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE------YIQKFANCGISKFQHV 484
           +DDL+F  ++  P     +    +I    R    ++ E              G  + +  
Sbjct: 433 DDDLAFERVVNQPKRGLGDKAQQEIQREARAHGTSLLEGARSLLARGGIGGKGAGQLRAF 492

Query: 485 IKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
           +  +       + +          IL        + +    E    ++ L E +    + 
Sbjct: 493 VDGMDRWHGTTLDRDHDHIRLAEQILDESGYTAMWQADKTPEAPGRLENLKELVKALEQF 552

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L   LE     ++     + ++V IMT+H AKGLE PVVFL      +F 
Sbjct: 553 EN--------LQGFLEHVALIMENETEESVDKVTIMTLHAAKGLEFPVVFLPGWEDGLFP 604

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                  +        EE  RL YVG+TRA 
Sbjct: 605 SQR--------------------------------AMDETGLKGLEEERRLAYVGITRAE 632

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               I   +N     +     W   +   F ++     +++                   
Sbjct: 633 QLCTISFAAN-----RRVYGQWQSQLPSRFIDELPSAHVEVLTPPGLYGGGYGAAGMASS 687

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                 R +       ++   +    P+       
Sbjct: 688 LEAQALRADVYDSPGWKRMQTRAGGRPMAQPRESR 722


>gi|34557269|ref|NP_907084.1| ATP-dependent DNA helicase [Wolinella succinogenes DSM 1740]
 gi|34482985|emb|CAE09984.1| ATP-DEPENDENT DNA HELICASE EC 3.6.1 [Wolinella succinogenes]
          Length = 681

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 110/703 (15%), Positives = 229/703 (32%), Gaps = 132/703 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI--- 62
           G    ++  +  +  + +    +   N             + ++A  L Q          
Sbjct: 29  GAGSGKTKTITTRLAYLIEEVGIPPSNTLTLTFTNKAAAEMRERALRLVQRRDMHPPLLC 88

Query: 63  -EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
              +F LL   F  Q+   + N +  + + +   LK          ++         +  
Sbjct: 89  TFHKFGLLFLKFHIQRLGRKPNFVLIDGDDRKKILKNINDDLPVGLVESEISRMKNWLIM 148

Query: 122 STLASL-------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              A L        L   +   YEE  K+  ++DF+DL++ +  +L+  +    +  ++ 
Sbjct: 149 PDEALLSAQDKNYKLIASIYGKYEEFLKEKNMVDFDDLLLLSLKILEGDEE---LAKEVS 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++  +I++DE QDT+ +Q+++++ L +          +   L  VGD+ QSIY + GA  
Sbjct: 206 EKYQYIMVDEYQDTNELQYKLLKKLCQ----------THNNLCVVGDDDQSIYGWRGANI 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L                  ++ L  ++RSTA IL   + +    +   G +  S   
Sbjct: 256 NHILDFPDHF--------AGAKVVRLEENYRSTAPILEAANSLIEFNKGRLGKTLKSV-- 305

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                   G    +++ E +    +                          A+++A  I 
Sbjct: 306 -------KGAGEAIEILESLDEGEE--------------------------AQKVAKRIR 332

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++ +           +   DI VL R    +  +        N  KI           +
Sbjct: 333 TLLDSG----------VSPSDIAVLFRLNALSRSLEEGF----NRAKIPFKLVGAMRFYE 378

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKF 473
              IKD+++  R I++  DD S   ++  P     +    K +   +    +++E  +K 
Sbjct: 379 RSEIKDILSYFRLIVNPHDDFSLARIINKPKRGIGKVTQDKLLLEAQRAGCSLFELYKKG 438

Query: 474 ANC------GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVI 526
           A                   I EL  + +  +   F          ++ F +     + +
Sbjct: 439 AIEGLVSAKNHETLTGFFAMIEELQAVLEESTLR-FLERFEELSLLKEYFENSKETIDRV 497

Query: 527 DVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             ++EF         ++  ++L++ +++L               + V  M+VH +KGLE 
Sbjct: 498 SNIEEFYGVFRDFILSNPMANLEDFLNDLSLKSD----QDEVGDSFVSCMSVHASKGLEF 553

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             +F+V      F                                              E
Sbjct: 554 EHLFVVGFEEGFFPMIREGS-------------------------------------DLE 576

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           E  RL YV  TRA   L +    +   + K  +      + ++
Sbjct: 577 EERRLGYVAFTRAKSHLAVSHVHSRFYKGKRTELLKSRFLKEA 619


>gi|226942221|ref|YP_002797294.1| DNA-dependent helicase II [Azotobacter vinelandii DJ]
 gi|226717148|gb|ACO76319.1| DNA helicase II, UvrD [Azotobacter vinelandii DJ]
          Length = 726

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 118/721 (16%), Positives = 228/721 (31%), Gaps = 132/721 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +     S                +  + + L   S        
Sbjct: 32  GAGSGKTRVLVHRIAWLIEVENASPHAILAVTFTNKAAAEMRTRIEQLLGTSPMGMWIGT 91

Query: 66  F--------------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
           F              + L+  F       Q+ ++ + I +   D +    +    FI  +
Sbjct: 92  FHGLAHRLLRAHWQEAGLAENFQILDADDQQRLVKRVIRELGLDEQRWPARQAQWFINAK 151

Query: 112 DRFNTYKMFKSTLASLTLA--KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                          L LA    + A YE A  +  V+DF +L++   DL +       +
Sbjct: 152 KDEGLRPQHIQPGGDLFLATQAKIYAAYEAACARAGVIDFAELLLRALDLWRD---RPGL 208

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   H+L+DE QDT+ +Q+  +R L +             +L AVGD+ QSIY +
Sbjct: 209 LEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQ----------GGASLMAVGDDDQSIYGW 258

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + + +  +               I L  ++RST  IL   + + +  +   G   
Sbjct: 259 RGARIENIQQFCQDFPA--------AETIRLEQNYRSTGSILKAANALIANNQGRLGK-- 308

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +LW           + +     + F+   +       AR +
Sbjct: 309 -------------------ELW-------TEGADGEPIGLYAAFNEHDE-------ARYV 335

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
             +I   +             +   +I +L R    + ++       K    I       
Sbjct: 336 VDSIEQALKDG----------LTRSEIAILYRSNAQSRVLEEALLREK----IPYRIYGG 381

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IK+ +A  R I ++ +D +   ++  P     E  +  +    R    +++ 
Sbjct: 382 QRFFERAEIKNAVAYLRLIHTRHNDAALERIINLPARGIGEKTVETLRQLAREADLSLWG 441

Query: 469 YIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +       +    S     ++ I  L    +         +++     R    +  G
Sbjct: 442 ALHQAVGGKLVSGRAASALNAFVELIDSLALKVEQLPLPQTIQVVVEDSGLRAYHGAEKG 501

Query: 523 NEVI---DVLDEFLNFTLRNEQNSYSSLQE-LISELEQYPPTIKRAHSAN-HNEVRIMTV 577
            +     + L+E ++     E      LQ  L + L+          + +  + V++MT+
Sbjct: 502 EKAQARVENLEELVSAARAFEHYEDEGLQTPLAAFLDHASLEAGEQQAGDFEDSVQLMTL 561

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P VFLV     +F HK   +                                
Sbjct: 562 HSAKGLEFPQVFLVGMEEGLFPHKMSLEEPG----------------------------- 592

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA  +L++                    V +      R  +
Sbjct: 593 -----RLEEERRLAYVGITRAMRRLVVSYAETRRLYGSETYNRISRFVREIPPALLREVR 647

Query: 698 I 698
           +
Sbjct: 648 L 648


>gi|318042807|ref|ZP_07974763.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CB0101]
          Length = 802

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 110/627 (17%), Positives = 212/627 (33%), Gaps = 99/627 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y  A   N  LDF+DL++    LL++ D    +R+   +   H+L+DE QD
Sbjct: 204 KLMAETYRRYRRALAANNALDFDDLLLLPVQLLRQNDE---VRHYWHRRFKHVLVDEYQD 260

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  D     +      R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 261 TNRTQYELIKLLVADGRDPADFGEWQGRSVFVVGDADQSIYSFRAADFTILMGFQEDFGD 320

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
            A +   + ++++L  ++RSTA IL   + + S            T              
Sbjct: 321 GAPDDATR-TMVKLEENYRSTATILEAANALISNNTERIDKVLRPTR------------- 366

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                           + +  + T   D + +       A  + + +  +          
Sbjct: 367 ---------------GDGELITLTRCDDEIAE-------AEAVVHRMRML--------EA 396

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +  +D+ VL R    +  +          + I  V        D   IKD++   +
Sbjct: 397 ANPDLGWRDMAVLYRTNAQSRAMEESL----VRWGIPYVVVGGLRFYDRREIKDILGYLK 452

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + +L +P     +  I ++    ++    ++      E ++        
Sbjct: 453 LLVNPADTVSLLRVLNTPKRGIGKTTIERLSDASNQLGIPLWDVVSDPEAVRSLGGRSAK 512

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + I  L   A+   P +   +++       + I+   +E  D    L+E +N  
Sbjct: 513 GLLQFSELIRSLQARAETAPPSELVQVVMEQSGYVAELIAAGTDEAEDRRRNLNELVNAA 572

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N   SL + ++          +      + V +MT+H +KGLE PVVFLV    
Sbjct: 573 LQYQEENEEGSLDDFLASAALASDADSKDTEQ--DRVTLMTLHASKGLEFPVVFLVGLEQ 630

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           +  EE  RL YVG+
Sbjct: 631 GLFPSYRSLDDP----------------------------------AAMEEERRLCYVGI 656

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +      ++     +  +           E  
Sbjct: 657 TRAKERLFLSHASERRLWGGMREPAVPSVFLSELPDELVQGDLPRSGGAALRRENRLERL 716

Query: 716 THHPENTPLEREETIKQLMDEQKIPKK 742
           T        +             + ++
Sbjct: 717 TRVDRAESEQVRSVGDAAQPANAVRRR 743


>gi|330431882|gb|AEC16941.1| ATP-dependent DNA helicase Rep [Gallibacterium anatis UMN179]
          Length = 670

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 104/596 (17%), Positives = 202/596 (33%), Gaps = 122/596 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L       Y    +    +DF+DLI+    +L+  D    IR K  ++I ++L+DE QDT
Sbjct: 163 LFASYYQQYMAQMQALNAVDFDDLIMLPTLVLRNNDA---IREKWQKKIQYLLVDEYQDT 219

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+E+I+ L                   VGD+ QSIYS+ GA P+ ++R +       
Sbjct: 220 NTSQYELIKLLVG----------KAAKFTVVGDDDQSIYSWRGANPENIVRLRDDFPT-- 267

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  S+I+L  ++RST  IL   + +    ++       S              GT 
Sbjct: 268 ------LSVIKLEQNYRSTQRILHCANILIDNNDHIFSKRLFSNL------------GTG 309

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            L + +                       +  +    A R+            + S+   
Sbjct: 310 NLLQVI-----------------------EAQNEEHEAERVVAE---------LMSHRFL 337

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                +D  +L R    + L+           +I    +        + IKD+MA  R +
Sbjct: 338 NKTAYRDYAILYRGNHQSRLLEKTL----MQNRIPYKISGGTSFFSRVEIKDIMAYLRLL 393

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------SKF 481
           ++Q+DD +F+ ++ +P        + K+    + +  +++E I  F           +  
Sbjct: 394 VNQDDDAAFIRIINTPRREIGSATLEKLGLLAKEKHCSLFEAIFDFELLQRVTAKAYTAL 453

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFT 536
           Q   +++ +           +    +    +       +  N  +       +   L + 
Sbjct: 454 QDFAEWVVKASDEVVRGEAQEAIRAMFSHIQYENYLYEQASNPKVAEIQTKNVATLLQWV 513

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E N   +L + +  L       +  +    ++V++MT+H +KGLE P V+L+ 
Sbjct: 514 DSMLQGDEFNEPLTLSQAVLRLTLRDMMERSENEEEGDQVQLMTLHASKGLEFPYVYLIG 573

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H++                                       +  EE  RL Y
Sbjct: 574 MEEGILPHQNSID-----------------------------------DNNIEEERRLAY 598

Query: 653 VGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           VG+TRA  +L            +    + + + +     +      K  LT +  K
Sbjct: 599 VGITRAQKELTFSCCKRRRQMGDLVKMEPSRFLLELPQDYLQWEKDKTPLTEAEKK 654


>gi|308051314|ref|YP_003914880.1| ATP-dependent DNA helicase Rep [Ferrimonas balearica DSM 9799]
 gi|307633504|gb|ADN77806.1| ATP-dependent DNA helicase Rep [Ferrimonas balearica DSM 9799]
          Length = 671

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 99/606 (16%), Positives = 197/606 (32%), Gaps = 122/606 (20%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 K +   E+N+    L+  + +  +    +        + +   A L     L  
Sbjct: 112 DTLALLKELTADELNEDKDQLRMLITQISNWKNDLVLPEKALTLARDPQAILH--AQLYE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y         LDF+DLI+    LL      A +R K    + ++L+DE QDT+  Q+E+
Sbjct: 170 RYRAHLTAYNALDFDDLIMLPTLLLASH---AEVREKWQNRLRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +                VGD+ QSIYS+ GA+P+ ++   +             
Sbjct: 227 VKLLVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +    +  S              G  +  + ++
Sbjct: 269 KLIKLEQNYRSSGCILNAANILIANNPHVYDKTLRSEL------------GYGEKLKVIM 316

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           + ++                          A R+   +           +      + KD
Sbjct: 317 ANNED-----------------------HEAERVVAELVR---------HKFVNHAKFKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L            +I    +          IKD+M   R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLFEKAL----MTNRIPYKLSGGTSFFSRSEIKDIMGYLRLLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQH------VIKYI 488
           +F+ +   P        + K+         +++      A   +   Q         +++
Sbjct: 401 AFLRVCNVPKRGMGPATLEKLGRLANERQISLFAAAFDPALEQVLPPQAAETVMVFTRWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN---- 539
            EL   A+          ++                +     +  + E   +        
Sbjct: 461 VELGDRAERGDTLAALKDLVREINYEDHLYDTSPSPKAAEMRMKNVSELYRWITDMIEGD 520

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +     +L ++++ L       + +     ++V++MT H +KGLE P VF+V T   +  
Sbjct: 521 DLEEPMTLSQVVTRLTLRDMMERNSEEEEADQVQMMTFHASKGLEFPYVFMVGTEEGLLP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 581 HQSSLD-----------------------------------EGNVEEERRLAYVGITRAQ 605

Query: 660 DQLIIC 665
            +LI  
Sbjct: 606 RELIFT 611


>gi|238798859|ref|ZP_04642327.1| ATP-dependent DNA helicase rep [Yersinia mollaretii ATCC 43969]
 gi|238717309|gb|EEQ09157.1| ATP-dependent DNA helicase rep [Yersinia mollaretii ATCC 43969]
          Length = 673

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 104/662 (15%), Positives = 211/662 (31%), Gaps = 121/662 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ +    +    + D        +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLISAISNWKNDLLDPAAAAAQARSERD--KLFVHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+       +R +    + ++L+DE QDT+  Q+ +++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQNN---LEVRERWQNRLRYLLVDEYQDTNTSQYHMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     S      VGD+ QSIYS+ GA P+ ++       +          +I+L 
Sbjct: 233 ----------SRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ--------LQVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S                              
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E        +   ++    A R+            + ++   +  Q  D  +L R
Sbjct: 305 -----ELEYGDELKVITANNEDHEAERVV---------GELIAHHFVKKTQYSDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFMRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        I K+        ++++               G+   Q    ++  +I +
Sbjct: 407 NTPKREIGSTTIQKLGEWANVRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWMEAIIRL 466

Query: 495 AQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E N   S
Sbjct: 467 VEREPVAAVRDLIHGIDYESWLFETSPSPKAAEMRMKNVNLLFSWMTEMLEGSELNEPMS 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LTQVVTRFTLRDMMERGESDGELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D +    +   S  +          +        +
Sbjct: 612 CKERRQYGELIRPEPSRFLMELPQDDLKWDNERQVVSPQERMQKGQSHLANIRAQLANAK 671

Query: 727 EE 728
           ++
Sbjct: 672 KQ 673


>gi|59713128|ref|YP_205904.1| DNA helicase and single-stranded DNA-dependent ATPase [Vibrio
           fischeri ES114]
 gi|59481229|gb|AAW87016.1| DNA helicase and single-stranded DNA-dependent ATPase [Vibrio
           fischeri ES114]
          Length = 671

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 110/655 (16%), Positives = 220/655 (33%), Gaps = 125/655 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++I+     L++ L    +    +        + +S      L  +   
Sbjct: 112 DQLALLKELTEKQIDGDKDLLRQLLSSISNWKNDMLTPAQVKGVARSEQD--QLFAFCYE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y    K    LDF+DLI     LL+       +R +   +I ++L+DE QDT+  Q+E+
Sbjct: 170 MYLNQMKAYNALDFDDLISLPVLLLRTN---QEVRERWQMKIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 227 VKLLVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLNEDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +A      S                        
Sbjct: 269 RVIKLEQNYRSTSRILRAANILIANNPHAFEKRLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + +Q    +  D           A R+            + ++        KD
Sbjct: 308 -------DGEQIKILTAKD-------DEHEAERVV---------GELIAHRFLNRTDYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             VL R    + LI           ++    +          IKD+MA  R + + +DD 
Sbjct: 345 YAVLYRGNHQSRLIEKSL----MQNRVPYKISGGTSFFARAEIKDIMAYLRLLTNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +           +   +    +I
Sbjct: 401 AFLRVVNTPRREIGPVTLEKLGSYANMRGKSLFESSFEIGLEQTLSGRGLESLRRFCHWI 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTL-----R 538
             +   A+  +  +    ++               ++     +  + +  ++ +      
Sbjct: 461 VSISENAERGNTVEAVRSLVKDIHYEDWLYETSTSAKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           N  N   +L+E++ +L       +       ++V++MT+H +KGLE P V+L+     + 
Sbjct: 521 NYDNEEKTLKEVVQKLTLRDMMERGEDEDGADQVQLMTLHASKGLEFPYVYLIGAEEGIL 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL YVG+TRA
Sbjct: 581 PHQTSID-----------------------------------EDNVEEERRLAYVGITRA 605

Query: 659 SDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
             +L   +CK      E    + + +         D  +KK K T     +   A
Sbjct: 606 QKELTFTLCKERRQYGELIRPEPSRFLEELPHDDLDWEMKKPKPTQEERMERGKA 660


>gi|89889935|ref|ZP_01201446.1| putative ATP-dependent helicase, UvrD/REP helicase family
            [Flavobacteria bacterium BBFL7]
 gi|89518208|gb|EAS20864.1| putative ATP-dependent helicase, UvrD/REP helicase family
            [Flavobacteria bacterium BBFL7]
          Length = 1057

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 126/790 (15%), Positives = 247/790 (31%), Gaps = 120/790 (15%)

Query: 162  KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
            K   + +I  ++ ++  H  IDE QDTS +QWE +  L  +     + + +  TL  VGD
Sbjct: 370  KDQPAPFIYERLGEKYRHYFIDEFQDTSRMQWENMIPLISNAVQSIDDNGNSGTLMLVGD 429

Query: 222  EKQSIYSFHGAEPKRVL-REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS- 279
             KQSIY + G++  + L   +         + Q      L  ++RS  +++   ++ F  
Sbjct: 430  AKQSIYRWRGSDANQFLGLLEEDYLFELEKSNQ-----TLEFNWRSYHNVIEFNNEFFKF 484

Query: 280  -----IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
                   +  + L ++      H+ +   + G  Q+     +      +    +      
Sbjct: 485  YGDYLNNDTYKNLYQNYL----HQKTTHKKGGYTQIDFLDNTNFSYDDDDDLNTPYPP-- 538

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                          +   I N++              +  DI +LVRK      +     
Sbjct: 539  -------------HVHSLIENILEQG----------YELGDICILVRKHTQGHELAQYL- 574

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  +I+VV  D  ++     ++ L+   +     +               F  + + 
Sbjct: 575  ---VKQEITVVSGDSLLVEASPRVRLLIEFMKMAHQPDQQAL--------KLGFLLEYVQ 623

Query: 455  KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                 +  +                 F+    ++      A      +     LG     
Sbjct: 624  YHQIDQKNSFITQHVNLSIHEMTEKLFESNSTFMESAFAKAPLFKATEQTAQALG----- 678

Query: 515  QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
                          L  FL            SL   +   ++    +    + +   V+I
Sbjct: 679  ------LFQHQDLRLQSFLELVFEFSNGQDVSLSRFLEHWDKKKEKLSVPATPDPKAVQI 732

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSH-KHIKKMHIMPSLNDDPGIPIWIPQSKSR--NNI 631
            MT+H +KGLE PVV +    + +    K    + + P   +            S    + 
Sbjct: 733  MTIHKSKGLEFPVVIVPYCDTSINHSLKPTNWVSVNPEAYEGFEHLYMSLSKDSEFYPDQ 792

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +      +TQ ++   LYV  TRA +QL IC      ++ +      +  +   +  
Sbjct: 793  ARQVYNTHLHNTQMDHINGLYVAFTRAVEQLYICSIEKPESKSQKETSLRHGQLLKRY-- 850

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                                 + +T   E T  ++  + ++    +  P     P     
Sbjct: 851  --------------------LDNNTTSWEKTENDQVSSFQKGTKVKLSPNTSSMPTFTLG 890

Query: 752  NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
            N     N S  +   +  L       +  N+G ++H  +  I         +        
Sbjct: 891  NYETQSNSSRANFSTRRGLLWASGVQEAINKGNLLHDYMAQI-----ESIDDMPDVILKI 945

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS--G--- 866
                + +   K  L+   RL+ +P+         Y E      +N   +  I++  G   
Sbjct: 946  ERDDYISSLLKTELIETLRLIISPL---------YFEKYFRSNLNILNERGILTPEGKKF 996

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS-YPNKSLVCLLI 925
              D++ I  Q + I +YKT              H  QL  Y  +L+   Y  K    +LI
Sbjct: 997  IPDRLIIEDQQVTIIDYKTG--------AQLEKHRDQLDYYAALLQQMNYKIK--EKVLI 1046

Query: 926  YVSE-PKVFI 934
            Y  E  ++  
Sbjct: 1047 YTDELKELIW 1056


>gi|78223100|ref|YP_384847.1| DNA helicase/exodeoxyribonuclease V subunit beta [Geobacter
            metallireducens GS-15]
 gi|78194355|gb|ABB32122.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Geobacter
            metallireducens GS-15]
          Length = 1200

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 129/999 (12%), Positives = 275/999 (27%), Gaps = 165/999 (16%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            ++    +  +   L                E     I+   + L++A +    +    LL
Sbjct: 206  DDEVAALVSECEALYGELTRMWESRRGEIEE-----IIATHKGLRRAQKNYHPDLVPGLL 260

Query: 70   SS-FFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
                  T    P           T  I  ++    E  +    +      R    +    
Sbjct: 261  EGMADYTASGNPWDLCPGFEKFTTAYIQGQALQKNEPPEHPFFDLCDRLFRIVEKRFLAL 320

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
              +  T A+         K +  V  ++DL+ +    L+     A +  ++       LI
Sbjct: 321  KGSLFTFAR---ERLSLLKAERAVRSYDDLLTDLYRALQGP-TGADLADRLASRYRAALI 376

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT  +Q+ + R +  D             LF +GD KQ+IYSF GA+    L  + 
Sbjct: 377  DEFQDTDPVQYRIFREIYLDAATP---------LFLIGDPKQAIYSFRGADIFAYLEARN 427

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                         +   +  ++RST  ++  ++ +F        + E         + R 
Sbjct: 428  DVPAE--------NRFTMGENWRSTPSMVEGINALFRQKRETPFVVEAIGYPEVTAAKRE 479

Query: 303  G-------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                        +QLW    +  D                +    +   +   +   I+ 
Sbjct: 480  EPLLLDGRDPAPLQLWFMARTPEDGAG-------------ISMGPARERIVMAVGAEIAG 526

Query: 356  MIGTDTI-FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++       +    R +  +DI V+VR  K+  L+    R L     I  V      L  
Sbjct: 527  LLADGREGRATIDGRGVVPEDIAVIVRSHKEAALVQEGLRGL----GIPSVVQSAMSLFA 582

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                +++  +   +     +      L + +   S +DI ++       E   E  +++ 
Sbjct: 583  TEEAREICRILEAVAEPSSETRVRAALATTILGMSGNDIARLLEDERGWEERLEAFREYH 642

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
            +      +  +     L+              +L    G ++  +           E ++
Sbjct: 643  DFWQG--RGFMTMFRTLLAR------EGVRERLLPFVDGERRLTNVL------HCGEVIH 688

Query: 535  FTLRNEQNSYSSLQELISELEQY---PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                      + L     E           +    ++   VRI+TVH +KGLE P+VF  
Sbjct: 689  GAAMEGSLGVAPLCAWFGERVNSPPPDEEYQIRLESDEKAVRIVTVHVSKGLEYPIVFCP 748

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
             T   V         H    +  D G           ++         +     E  RLL
Sbjct: 749  FTWGGVRDDDDTAVCHDGYRMVADFG-----------SDDYKSRRLKARNEALAENVRLL 797

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQR------------------------TWYDMVYD 687
            YV +TRA  +  +        E  +                           +   ++  
Sbjct: 798  YVALTRARHRCYLVWGKFRYAETSALAYLLHHPADSRECDIKAVLGEVMKGISDEALLKR 857

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                 E              E  ++                   +            +  
Sbjct: 858  LDGLKEEGGGAIAVTVDPAPEAASFRSGPEGAATPVCPPFGRKIESDWRVASFTSFAARH 917

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLL-------SDNQTFNRGLIIHKLLQVIFTLPEHK 800
            + +   P    P+T+    +T +  +L       +  +    G+++H + + +       
Sbjct: 918  RPEEELPDRDQPATVVADSETAVFEVLPAEGTIFAFPKGSQAGIVLHAVFENLDFAAATD 977

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEVSVS 852
             K             +  +    +   +  +L+ P         +         +E+   
Sbjct: 978  AKVVSVVAQELARHGFGEEWRGAVCAMVRNVLDAPLDKGDSAFRLADLAPHSWRAEMEFF 1037

Query: 853  GKINCPKKDII-------------------------------ISGRIDQISISQQNIFIF 881
              +     + +                               + G +D +   +   ++ 
Sbjct: 1038 FPLRFVGSEQVAAVLRRWGALPDGATLAEVAARLDFSPVQGMVRGFMDMVFEHRGKYYLI 1097

Query: 882  EYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKIL 911
            ++K++H   +           E     +  Q  +Y   L
Sbjct: 1098 DWKSNHLGNRVDDYGRENLGREMERKLYPLQYLLYTVAL 1136


>gi|300173052|ref|YP_003772218.1| recombination helicase AddA [Leuconostoc gasicomitatum LMG 18811]
 gi|299887431|emb|CBL91399.1| recombination helicase AddA [Leuconostoc gasicomitatum LMG 18811]
          Length = 1242

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 103/616 (16%), Positives = 211/616 (34%), Gaps = 42/616 (6%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
             +L  S   F +   +       +     + + +     + ++K++N ++DF DL    
Sbjct: 323 LNQLIDSFFRFDQANWQKIQRATDELVRTLIVVTQTFRVTFAQSKRENKLVDFPDLGALA 382

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             +L        +    + +   IL+DE QD + +Q  ++  +           S+ + +
Sbjct: 383 LQILADEPTRKTV----NGQFIEILVDEYQDINQLQETLLSLV-----------SNGKNM 427

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           + VGD KQS+Y F  A+P     + +             S IEL  +FRS  ++  + + 
Sbjct: 428 YMVGDVKQSVYGFRQADPTLFTSKYKQFNT----TENDDSRIELADNFRSQNNVTRMTNL 483

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +F+   + +          +    +      V     +        +P         D  
Sbjct: 484 IFTQLMDEKLGDIAYAGEAKLVP-KATYPTAVPAVFDIDIITKQTSDPLV------NDQE 536

Query: 337 PQESSASILAR--RIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITF 391
             +      A+  ++A  I  +  T       K    R +   DI +L R +     +  
Sbjct: 537 ETQVFEKRQAQYAQLADKILKLRETTLFDRKSKPTGMRPVNYADIAILTRSKSGYIDLVA 596

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
             R    D  I V           + +  ++ + R I +   D+  V +L+SPLF+F+E+
Sbjct: 597 TLR----DAGIPVQVESVGNYFQTMEVYLILDVLRVIDNPHQDIPLVAVLRSPLFDFTEN 652

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
           D+  +     + +       +  +    + + VI    +   +A           I    
Sbjct: 653 DLAAVRLADQKHDYWSA--LQKFSENSPRSKKVIALFDKWHLLATQNDLVTLIWTIFDDT 710

Query: 512 KGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHS 566
                      G +    L     +    + N+ + L   +  +EQ      +       
Sbjct: 711 AWLDYVAGMPGGTQRQANLHALYEYARTYQNNTNAGLFRFVRYIEQLQENDGQLGEAPQE 770

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           ++   VR+MT+H +KGLE P+V L +      +     K+ I                  
Sbjct: 771 SDAQAVRLMTIHASKGLEFPIVILPEFDKAFNTKDLTGKVLIQKDAGIGIDYLQPDALVS 830

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                   + + +K+ +  E  RLLYV +TRA  Q+ +          ++ Q +      
Sbjct: 831 MPTLQKLAVQQAIKRQSWSEEMRLLYVALTRAEQQIYVIGTVAVDENGQNKQLSDLWQRA 890

Query: 687 DSFHNDERVKKIKLTN 702
            +       + ++LT 
Sbjct: 891 KNTAGQFLNEDLRLTA 906



 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 22/189 (11%)

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSD----NQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
            DI+E     P+         L   ++D      +   G+  H LLQ+I       R+   
Sbjct: 1027 DIDEDGDFKPANELVNQSLMLPGFMTDGSHKPSSAAVGIATHLLLQLIDFKQIQTRQTLE 1086

Query: 806  TSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTA--MSCDSYSEVSVSGKINC---- 857
                          +   L+    +   L+ P        +     E + +  +      
Sbjct: 1087 ELRDNLVNSKRILPQVAALINIEQLMAFLDTPFAKRLQQHADTLQREATFAMIMPANRIY 1146

Query: 858  ----PKKDIIISGRIDQISISQQN--IFIFEYKTHHHVPQ----EIEHIPYTHIAQLSIY 907
                    +++ G ID   I +    I IF+YKT          E++ +   +  QL +Y
Sbjct: 1147 QTLTDDAPVLVHGIIDGYFIDESTQAITIFDYKTDFIRHDRVIEELQKVKTRYQGQLRLY 1206

Query: 908  EKILKDSYP 916
            ++ L+  +P
Sbjct: 1207 QQALQQEFP 1215


>gi|289705920|ref|ZP_06502298.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
 gi|289557366|gb|EFD50679.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58]
          Length = 962

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 99/601 (16%), Positives = 186/601 (30%), Gaps = 90/601 (14%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS-FFLTQK 77
              P     ++  NK  +   E     I   AQ +  ++            ++   L   
Sbjct: 107 RARPHEILAITFTNKAAAEMRERVAGLIGPTAQRMWISTFHSSAVRLLRNEAANIGLKST 166

Query: 78  FTPQKN------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA----SL 127
           FT   +      + T     +    +   K   +    +++       + +T+A      
Sbjct: 167 FTIYDSADSLRLVTTVAKQHELDPKRFAPKALLNRISSLKNELVEADDYAATVAEGDPWG 226

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y    ++   LDF+DLI  T  +    +    +     +   H+L+DE QD
Sbjct: 227 RAVAAVYRGYTARLRQANALDFDDLIGMTVHMF---EAFPRVLDNYRRRFRHVLVDEYQD 283

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +IR L       +   +    L  VGD  QSIY+F GA+ + ++  ++     
Sbjct: 284 TNHAQYRLIRLLAGPAGDPEGVETPGGELTVVGDSDQSIYAFRGADIRNIVEFEQDF--- 340

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I+L  ++RST  IL   + V     + +                      
Sbjct: 341 -----TDAVTIKLEQNYRSTQTILDAANAVIERNPDRRPKR------------------- 376

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW            P    + +  +S   E         IA TI  +   D       
Sbjct: 377 --LW------TAEGEGPAIVGYAAENESAEAE--------WIASTIDRLQDED------- 413

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I+  D+ V  R    +  +            I           D   IKD +A  R 
Sbjct: 414 --GIRPADVAVFYRTNAQSRALEERL----VTRGIPYRVIGGTRFYDRKEIKDALAYLRV 467

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISK 480
           I++ +DD++   +L  P     +     +        + +    +        A   +  
Sbjct: 468 IVNPDDDVNVRRILNEPKRGIGDRAEGAVAAWAERNRSTFSAALRDAENAPGMAARSLKA 527

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
            +  ++ + +L  +A+   P      +L               +     D L E +    
Sbjct: 528 VRGFVQMMDDLGQVAESAGPATVLEAVLEQSGMLAALRESEDLQDESRADNLGELVAVVR 587

Query: 538 RNEQNSYSS-LQELISELEQYPPTIKRA---------HSANHNEVRIMTVHTAKGLESPV 587
             E       L + + ++       +            +    +V +MT+HTAKGLE   
Sbjct: 588 SFETTHPDGTLSDFLEQVALVADADQLPTAPDVEGEALAEQQGQVTLMTLHTAKGLEFRR 647

Query: 588 V 588
           V
Sbjct: 648 V 648


>gi|238765155|ref|ZP_04626088.1| ATP-dependent DNA helicase rep [Yersinia kristensenii ATCC 33638]
 gi|238696645|gb|EEP89429.1| ATP-dependent DNA helicase rep [Yersinia kristensenii ATCC 33638]
          Length = 674

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 102/663 (15%), Positives = 216/663 (32%), Gaps = 121/663 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ + +  +    + D      + +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLISQISNWKNDLLDPAAAATLARSERD--KLFVHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+       +R +    + ++L+DE QDT+  Q+++++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQNN---LEVRERWQNRLRYLLVDEYQDTNTSQYQMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     S      VGD+ QSIYS+ GA P+ ++       +          +I+L 
Sbjct: 233 ----------SRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ--------LQVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S              G     + + + ++  
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKRLFSEL------------GYGDELKVITANNED- 321

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                                   A R+            + ++   +  Q  D  +L R
Sbjct: 322 ----------------------HEAERVV---------GELIAHHFVKKTQYSDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+        ++++               G+   Q    ++  +I +
Sbjct: 407 NTPKREIGSATVQKLGEWANVRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWMDGIIRL 466

Query: 495 AQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E N   +
Sbjct: 467 VEREPVAAVRDLIHGIDYESWLFETSPSPKAAEMRMKNVNLLFSWMTEMLEGSELNEPMT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D + +  +   S  +          +        +
Sbjct: 612 CKERRQYGELIRPEPSRFLMELPQDDLKWENERKVVSPEERMQKGQSHLANIRAQLANAK 671

Query: 727 EET 729
           +  
Sbjct: 672 KPQ 674


>gi|254418189|ref|ZP_05031913.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
 gi|196184366|gb|EDX79342.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3]
          Length = 785

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 112/632 (17%), Positives = 197/632 (31%), Gaps = 113/632 (17%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y+   +     DF DL+++   +L K    A +  +  +   +IL+DE QDT++
Sbjct: 192 QGLYAAYQARLRSLNACDFGDLLLHNITILSKH---ADLADEYRRRFRYILVDEYQDTNV 248

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  +R LT           S   +  VGD+ QSIY + GAE   +LR +R        
Sbjct: 249 AQYLWLRLLTA----------STGNVCCVGDDDQSIYGWRGAEVDNILRFERDFP----- 293

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 I++L  ++RST+ IL     + +   +  G +                     L
Sbjct: 294 ---GAKIVKLERNYRSTSHILGAASGLIAANRDRLGKT---------------------L 329

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W +  S    +     +                  AR IA  I           +  +  
Sbjct: 330 WTEDDSGDKVRVRGVWDG--------------EAEARLIADEIETARR-----PHAGEPG 370

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++ KD+ +LVR              L     I           +   I+D  A  R I S
Sbjct: 371 LKYKDMAILVRASFQMRAFEERLVMLA----IPYAVIGGPRFFERAEIRDAHAYMRLIQS 426

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQH 483
           ++DDL+F  ++  P     +  + KI    R    +    ++      +      +   +
Sbjct: 427 EDDDLAFERIVNVPKRGIGDTSVQKILQLARQHDLSALTAVRGLINTDELQARTRTALSN 486

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQ 541
            ++ +     +++     +    +L          +    G   +D L E      + E 
Sbjct: 487 FVRDLDRWRALSETTPHWEVMETVLEESGYTDMQKADRTSGQTRLDNLKELTQSMQQFE- 545

Query: 542 NSYSSLQELISELEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +LQ  +  +       +           V+IMT+H AKGLE P+VFL      VF 
Sbjct: 546 ----TLQAYLEHVSLVMDLERATSDDPNGDGAVQIMTLHGAKGLEFPLVFLPGWEEGVFP 601

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +          L ++                                 RL YVG+TRA 
Sbjct: 602 SQRSIDEKGEKGLEEE--------------------------------RRLAYVGVTRAK 629

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               I   +N     +   +     V +        +        +     A       P
Sbjct: 630 QDARISFAANRLVYGRWTSQLPSRFVDELPIAHVDPQSDTGYYGASTGMKEAKSRWDDAP 689

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                      K+             P +  +
Sbjct: 690 SFGSGYSSPGWKRAQSFTAAQTPNKIPARKAV 721


>gi|254432144|ref|ZP_05045847.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001]
 gi|197626597|gb|EDY39156.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001]
          Length = 800

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 110/610 (18%), Positives = 211/610 (34%), Gaps = 99/610 (16%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y  A   N  LDF+DL++    LL++ D    IR    +   H+L+DE QD
Sbjct: 203 KLMAETYRRYRRALAANNALDFDDLLLLPVQLLRQND---QIRNYWHRRFRHVLVDEYQD 259

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  D    +   + S R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 260 TNRTQYELIKLLVTDGQDPEAYDNWSGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 319

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
            A +   + ++++L  ++RSTA IL   + + +            T              
Sbjct: 320 GAADEATR-TMVKLEENYRSTATILEAANALIAHNTERIDKVLRPTR------------- 365

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  + T   D + +       A  + + +  +        + 
Sbjct: 366 ---------------GEGEPITLTRCDDEVAE-------AEAVVHRMRML--------DA 395

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               ++  D++VL R    +  +          + I  +        D   IKD++A  +
Sbjct: 396 AHSELRWGDMVVLYRTNAQSRAMEESL----VRWGIPYIVVGGLRFYDRREIKDMLAYLK 451

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + +L +P     +  I ++    ++    ++      E ++        
Sbjct: 452 LLVNPADTVSLLRVLNTPKRGIGKTTIERLTDAANQLGIPLWEVVSDPEAVRSLGGRSAK 511

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + + +L   +Q   P +    ++       + I+   +E  D    L+E +N  
Sbjct: 512 GLLQFRELLSDLQARSQDAPPSELVQRVMEQSGYLAELIAEGTDEAEDRRRNLNELVNAA 571

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N   SL++ ++          +      + V +MT+H +KGLE PVVFLV    
Sbjct: 572 LQYQEENEEGSLEDFLASAALASDADSKDTQQ--DRVTLMTLHASKGLEFPVVFLVGMEQ 629

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           +  EE  RL YVG+
Sbjct: 630 GLFPS----------------------------------YRSLEDPAAMEEERRLCYVGI 655

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +       +     I  +           +  
Sbjct: 656 TRAKERLFLSHASERRLWGGMREPAVPSVFLAELPEELVQGDIPRSGGAAIRREQRLDRL 715

Query: 716 THHPENTPLE 725
           T         
Sbjct: 716 TRVDREESRR 725


>gi|156975569|ref|YP_001446476.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Vibrio harveyi
            ATCC BAA-1116]
 gi|156527163|gb|ABU72249.1| hypothetical protein VIBHAR_03301 [Vibrio harveyi ATCC BAA-1116]
          Length = 1212

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 155/1023 (15%), Positives = 310/1023 (30%), Gaps = 171/1023 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMET-------GNPTIL-----KKAQTLQQASQT 59
            +     + LW  P   + DI+ Y++ +  +       G+   L     K+   L+     
Sbjct: 181  ALAGEVRQLWGSPSDLLYDISNYLTGAPLSLSVPAMQGSLADLHEQNLKQIDALKG-HWR 239

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------ 105
               ++  +L+S   + ++   +K++ T                D  +KL+K         
Sbjct: 240  DSQDDFLALISDSDVNKRSYTKKSLPTWLEAVNVWASTETTGYDYPDKLEKFAQNVLLEK 299

Query: 106  ---------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                        +  + F    +           ++      +AK +   L F+DL+   
Sbjct: 300  TPKGTAPQHPVFEAIEAFIANPISLKAPLLAHAIEHCRVMLAKAKNQKQWLSFDDLLTQ- 358

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                   D +A +  +I       +IDE QDT  +Q+ +   +  D        +    L
Sbjct: 359  LSASIDTDETALLTERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLD--------NPECGL 410

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++
Sbjct: 411  FMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVLAVNQ 460

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS- 335
            +F++P++      DS                V            Q  P    W    +  
Sbjct: 461  IFALPDSP--FIYDSDIPFHSVDYSPSADKRVW-------TMGGQKQPALTYWLQEAEDK 511

Query: 336  -LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
             LP+    + +A   A  I  ++     G   + +  K++ ++A DI VLVR   +  ++
Sbjct: 512  PLPKGEYLTAMAEATASQIQTILTAAQQGQACLVNGEKQKPVKAGDIAVLVRTGSEGRMV 571

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                + L +    SV  ++R  +      +DL  L + +L+ E+D +    L S LF   
Sbjct: 572  K---QALADQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALD 628

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLI 507
               +  +    +  ETV+E            +  + V+  +  +I              +
Sbjct: 629  AASLDAL----NNDETVWENAVNEFKEYRKLWVQRGVLPMLRAVISKRH------IAERL 678

Query: 508  LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTI 561
            L      Q          +  + E L        + +  L+ L   +             
Sbjct: 679  LEEGTSSQSENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAEHGLGGSDGQ 738

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             +   +  N V+I+T+H +KGLE  +VFL                      ++       
Sbjct: 739  IQRLESERNLVQIVTIHKSKGLEYDLVFLPFV-------------FGYREASEAKYYDAE 785

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRT 680
              ++          +K   K    E  RL+YV +TRA     I           K     
Sbjct: 786  NDRTVLDITGNDASLKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGV 845

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE--------NTPLEREETIKQ 732
             +  +     N +      L   + K +          P             E E    +
Sbjct: 846  HHSAIGYLVQNGQEGGINDLFVGLKKQQESFDNVVICDPPKQHDEMYVAEQTELEALTAK 905

Query: 733  LMDEQKIPKKLFSPI---------KNDINEPYILNPSTIDTKGK-------TNLESLLSD 776
             +          +             + +    +    ID+  +           S+ + 
Sbjct: 906  ELKTPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEAELVEPERSIFNF 965

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP 835
             +    G  +H L + I        +           ++    +    L   I  +L  P
Sbjct: 966  PRGARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDNVLATP 1025

Query: 836  M------MTTAMSCDSYSEVSVSGKINCPKKDII-------------------------I 864
            +      +          E+     I       +                         +
Sbjct: 1026 LDSKALLLNQKGPAQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGML 1085

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSY 915
             G ID +   Q   ++ ++K++H             +     + +  Q  IY   L    
Sbjct: 1086 KGFIDLVFEHQGKYYVLDWKSNHLGDDVFHYHGDALKSAMADHRYDLQYQIYALALHRFL 1145

Query: 916  PNK 918
             ++
Sbjct: 1146 RSR 1148


>gi|77456917|ref|YP_346422.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
            fluorescens Pf0-1]
 gi|77380920|gb|ABA72433.1| exodeoxyribonuclease V beta chain [Pseudomonas fluorescens Pf0-1]
          Length = 1229

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 128/928 (13%), Positives = 269/928 (28%), Gaps = 138/928 (14%)

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                     AK++ A +E+ K++  V+ F+D+++  +  L+  D    +   I ++    
Sbjct: 330  PDAAVLQHAAKWVGARFEDEKRRRAVMGFDDMLLRLDAALQ-SDGGERLATLIREQFPVA 388

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            LIDE QDT  +Q+ +  S+           +    LF +GD KQ+IY+F GA+    LR 
Sbjct: 389  LIDEFQDTDPVQYRIFESIYR-----IEEDNPETGLFLIGDPKQAIYAFRGADIYTYLRA 443

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            ++              +  L  +FRS+  +++ V+ VF   E+ +          ++  +
Sbjct: 444  RQA---------TTGRLHTLGTNFRSSHGMVSAVNHVFERAESREQGRGAFLFREKNGDN 494

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIGT 359
             +          +   Q      P    W    D  L        LA   A  I+ ++  
Sbjct: 495  PVPFQPVEAQGRKEHLQVSGLDVPALNIWHLSTDKPLSGAVYRQQLAAACASEITTLLNG 554

Query: 360  DT------IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                           R ++  DI +LVR  K+   +             SV  +D+  + 
Sbjct: 555  GQTGRAGFAQEGKDWRGLRPADIAILVRDGKEAQAVRGELAA---RGVRSVYLSDKDSVF 611

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
                  DL++  +     + + S    L     N    ++ ++           E + + 
Sbjct: 612  SAQEAHDLLSWLKACAEPDVERSLKAALACITLNLPLAELERLNQD--------ELVWET 663

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                   ++ + +    L  + +         +++    G +   +         L E L
Sbjct: 664  RVMQFRGYRELWRKQGVLPMLRRLLHDFQLPQMLIARSDGERVLTNLL------HLSELL 717

Query: 534  NFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                       + ++ L   L               ++   V+++T+H +KGLE P+VFL
Sbjct: 718  QQAASELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFL 777

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                S          +H                         ++LI         E  RL
Sbjct: 778  PFICSAKPVDGSRLPLHYHDESGKARISLKPD----------AELIAVADNERLAEDLRL 827

Query: 651  LYVGMTRASDQLII-------------------CKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            LYV +TRA     +                     +        +        + D   +
Sbjct: 828  LYVALTRAQHACWLGVTDLKRGNHSSSVLHLSALGYLLGGGATLNESSGLARWLDDLQQD 887

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
               +  +++  + +++       +T      P  R      +     +       + ND 
Sbjct: 888  CSALSVVEMPEATSEEYQPPRNEATLRATLLPSRRASENWWIASYSALRISDVLSVGNDE 947

Query: 752  NEPYILNPSTIDTKGKTNLESLLSDNQTFNR---------GLIIHKLLQVIFT----LPE 798
                       D +               +          G  +H LL+        +  
Sbjct: 948  APDSPQAQKLFDDERLDPEAPREIIAGGADIHRFPRGPNPGTFLHGLLEWAGEEGFAVTR 1007

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-----LENPMMTTAMSCDSYSEVSV-- 851
                + I   C +           + L  + +L     L+ P +          E+    
Sbjct: 1008 ESLDDAIARRCNRRGWEGWITTLGDWLQHLLKLPLPAGLDQPPVVLEQLKQYRVEMEFWF 1067

Query: 852  -----------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
                                          + + +  G ID     +   ++ +YK++  
Sbjct: 1068 ASHKVDVLKLDEQVRQFTHNGVARVGAEAVQLNGMFKGFIDLTFEHEGRYYVADYKSNWL 1127

Query: 889  VPQEIEH---------IPYTHIAQLSIYEKILKDSYP--------NKSLVCLLI-YVS-- 928
               +  +         +   +  Q  +Y   L             ++ +   L  ++   
Sbjct: 1128 GVDDAAYTERAMEQSILDNRYDLQYVLYLLALHRQLKARLADYDYDRHIGGALYLFLRGT 1187

Query: 929  ----EPKVFIIPQNKLNKAFAEISTKIP 952
                    F  P  +L +    +    P
Sbjct: 1188 RAPGGGVYFARPPRELIERLDLMFQGKP 1215


>gi|120553399|ref|YP_957750.1| ATP-dependent DNA helicase Rep [Marinobacter aquaeolei VT8]
 gi|120323248|gb|ABM17563.1| ATP-dependent DNA helicase Rep [Marinobacter aquaeolei VT8]
          Length = 672

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 98/629 (15%), Positives = 214/629 (34%), Gaps = 123/629 (19%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL--AKYLNAHYEEAKKKNCV 146
           + + S +  ++L   Q      ++   +     S  A         +  HY E  K    
Sbjct: 123 MREASAEAGDELNDVQMTISSWKNAMRSPAEAYSKAADEREQRIAIVYKHYNEYLKAYNA 182

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+DLI+    L +       +  K  ++I ++L+DE QDT++ Q+E+++ L  +    
Sbjct: 183 VDFDDLILLPVQLFRDNPE---VLAKWRRKIRYMLVDEYQDTNVCQYELVKQLVAERAA- 238

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                       VGD+ QSIY++ GA P+ + + K               I++L  ++RS
Sbjct: 239 ---------FTVVGDDDQSIYAWRGARPENLAQLKDDFP--------SLKIVKLEQNYRS 281

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T+ IL   + V +   +    +  S  TI                             ++
Sbjct: 282 TSRILRCANTVIANNPHVFEKALWSDHTI----------------------------GEE 313

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                  +   +         R+A  I              K  +  +D  VL R     
Sbjct: 314 IRIIRCRNEDAET-------ERVATEI---------LDQKLKNGLDFRDFAVLYRGNHQA 357

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            L+    +     Y+I    +          IKD M+  R +++ +DD +F+ ++  P  
Sbjct: 358 RLLEMKLQA----YQIPYRISGGQSFFSKNEIKDAMSYLRLMINPDDDAAFLRVVNVPRR 413

Query: 447 NFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
                 + ++    R    ++++ +               + +    ++ +         
Sbjct: 414 EIGPRTLEQLSHYARSRNVSLFKALGDMGAETHVTEKGLDRLRRFAHWVDKTCERLFSED 473

Query: 500 PHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQN-----SYSSLQE 549
           P      +    +  +      G        ++ +   +    R   +         +++
Sbjct: 474 PIPVIKQLFTDIEYEEWLHQHSGSPKQAERRMENIWYLVESIQRMLDDGKGTADEIGIED 533

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            I++L       +R    + ++V+++T+H +KGLE P VF++    ++  H         
Sbjct: 534 AIAKLVLRDMMEQREEEDDSDKVQLLTLHASKGLEFPHVFIMGLEEEILPH--------- 584

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                        +++   EE  RL+YVG+TRA + L +   ++
Sbjct: 585 --------------------------RSSIEEGNIEEERRLMYVGITRARETLALTYAAS 618

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                +  +      + +    D + + +
Sbjct: 619 RKQYGEKLETIPSRFLDELPEEDVKWEGL 647


>gi|218960875|ref|YP_001740650.1| Superfamily I DNA and RNA helicases [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729532|emb|CAO80444.1| Superfamily I DNA and RNA helicases [Candidatus Cloacamonas
           acidaminovorans]
          Length = 732

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 214/701 (30%), Gaps = 141/701 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  LIY+  + +   QV   N  +          + ++ + L            
Sbjct: 37  GAGSGKTRSLIYRTAYLIKEKQVHPWNILIVTFTNKAARELQERLEKLLNIPVRSLWVGT 96

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +               + F       QK+++ +   +   D +   +        + 
Sbjct: 97  FHAICCRILRFESAHLPFNANFSIYDEDTQKSLLKKIYKEYGFDKQSFPINNILTRISRY 156

Query: 111 RDRFNTYKMF----KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
           +++    +      +   +       +   Y++    N  LDF+D+++ T  LL   +  
Sbjct: 157 KNKLMLPEDIKFQGEDKDSEFATFLNIYRLYQQQLLLNQALDFDDILLWTAKLLLNNNT- 215

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R K   +  +++IDE QDT+  Q+E++  +              + +  VGD+ Q+I
Sbjct: 216 --VREKYRAQFQYVMIDEYQDTNKAQFEIVHQIAG----------GHQRVCVVGDDDQAI 263

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YSF GA  + +L  ++               I L  ++RST +IL + + V +       
Sbjct: 264 YSFRGASLRNILEFEKDY--------NSVHSIRLEQNYRSTGNILALANAVIANNRRRHS 315

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               S   +  +                                     L    +    A
Sbjct: 316 KELWSELPVGDKPV-----------------------------------LAVYENEIEEA 340

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            RI   I  +              I  ++I VL R    + +            +I    
Sbjct: 341 NRITDAILKLQRKG----------IPLREIAVLYRTNAQSRVFESAL----IQAEIPYSI 386

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETET 465
                      IKDL+A    + +  D+ S + ++  P     +  I ++         +
Sbjct: 387 VGGVQFYQRKEIKDLLAYLYVLSNLNDNESLLRIINEPARGIGQTSINRLIGFANKTRIS 446

Query: 466 VY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           ++      E I++  N    +       +             +    I+   +    + +
Sbjct: 447 LFSAIQNVEAIEELGNPAKKRISEFCLMLERWQQSVSRKPALEMVKTIVEELELISHYQN 506

Query: 520 RFGNE---VIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSANHN 570
               +     + L EF+            E      + + +  +             N +
Sbjct: 507 SNDPQDIARAENLVEFVTSVSEFSEHFYQENEREPLIADYLPYVALQTDLD--RVKENMD 564

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +R+MT+H AKGLE   VF+     ++  H+                             
Sbjct: 565 SIRLMTLHNAKGLEFEAVFIAGLEDELLPHRMCMN------------------------- 599

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                     + + EE  RL YVG+TRA + L +    +  
Sbjct: 600 ---------NQDSIEEERRLFYVGITRAKNYLHLSYTKSRR 631


>gi|126640935|ref|YP_001083919.1| ATP-dependent DNA helicase [Acinetobacter baumannii ATCC 17978]
          Length = 623

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 215/632 (34%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ I      +T +  +          +L   YE  
Sbjct: 71  RDNLSGAESKELIAKAMKKISDWKNDLILPEQAHSTCETPEDVQ-----FAHLYQLYERN 125

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K    + ++L+DE QDT+  Q+ +++ L 
Sbjct: 126 LRAYNAVDFDDLIVMPTRLLQEN---AEVRDKWQNRVRYLLVDEYQDTNTAQYILVKLLV 182

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   K+              II+L
Sbjct: 183 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLKQDFPN--------LHIIKL 224

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  ++   +  ++D 
Sbjct: 225 EQNYRSTSRILKAANCVIQNNPHIFDKKLWSDK------------GHGEVIRIITCRNDD 272

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A R+   + +++    +           KD  VL 
Sbjct: 273 D-----------------------EAERV---VKDLLTHKLMNGK------NWKDYAVLY 300

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 301 RGNFQARVLETQLRQMQ----IPYKLSGGTSFFARAEIKDVMSYLRLIINPEDDSAFLRI 356

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKYIHEL-I 492
           + +P        + K+    +    ++                  ++      +I     
Sbjct: 357 INTPKRAIGPVTLEKLGLFAQENNLSLLGASSDQRLSMVLPKKAETQLHEFADFISTFTR 416

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFL----NFTLRNEQNS 543
            + +   P      ++           +           D ++       N   R E   
Sbjct: 417 ELLEDDEPVPKVRQMMNEAGYIDYIREQSATPAQEKSKLDNIENLFSSIQNLINRAEDVD 476

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I +L       ++    + ++V ++T+H AKGLE P V+++    ++  HK+ 
Sbjct: 477 EKNIESVIRKLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPYVYIMGLEEELLPHKNS 536

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 537 -----------------------------------IAAETIEEERRLMYVGITRARQGLT 561

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   ++   
Sbjct: 562 LTLAEQRKNGGQMKQMTPSRFLDELPQDELEW 593


>gi|238794290|ref|ZP_04637903.1| ATP-dependent DNA helicase rep [Yersinia intermedia ATCC 29909]
 gi|238726374|gb|EEQ17915.1| ATP-dependent DNA helicase rep [Yersinia intermedia ATCC 29909]
          Length = 673

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 102/662 (15%), Positives = 215/662 (32%), Gaps = 121/662 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ + +  +    + D        +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLISQISNWKNDLLDPAGAAAQARSERD--KLFVHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+       +R +    + ++L+DE QDT+  Q+++++ L  
Sbjct: 176 KACNVLDFDDLITLPTLLLQNN---LDVRERWQNRLRYLLVDEYQDTNTSQYQMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++       +          +I+L 
Sbjct: 233 N----------RARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ--------LQVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S              G     + + + ++  
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKRLFSEL------------GYGDELKVITANNED- 321

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                                   A R+   I  +I    +      +  Q  D  +L R
Sbjct: 322 ----------------------HEAERV---IGELIAHHFV------KKTQYSDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHI 494
            +P        + K+        ++++                    Q    ++  +I +
Sbjct: 407 NTPKREIGSTTVQKLGEWANLRNKSLFRASFDLGLSEHLKGRGLESLQRFTHWMDSIIRL 466

Query: 495 AQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E N   +
Sbjct: 467 VEREPVAAVRDLIHGIDYESWLFETSPSPKAAEMRMKNVNLLFSWMTEMLEGSELNEPVT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LTQVVTRFTLRDMMDRGESDEEVDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D + +  +   S  +          +        +
Sbjct: 612 CKERRQYGELIRPEPSRFLMELPQDDLKWEDERKAVSPEERMQKGQSHLANIRAQLANAK 671

Query: 727 EE 728
           ++
Sbjct: 672 KQ 673


>gi|288573981|ref|ZP_06392338.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569722|gb|EFC91279.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 1160

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 147/932 (15%), Positives = 280/932 (30%), Gaps = 102/932 (10%)

Query: 8    SLNESYELIYKDL-------WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
             L+E +E +   L       W   +         +S          ++ A    +  +  
Sbjct: 226  ELDERHEAVIAPLIAASVEEWRSIHRMWCGPRGILSGLTLGDTKLGIRLAGLRDRWCEDI 285

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE--FIKIRDRFNTYK 118
              +     L       K    K   +         +K+  +          + +   + +
Sbjct: 286  DEDRYIDFLRDLCEAIKGARGKLADSIASLLPEEKVKDHRESILSRSFIWNLAEEGWSQR 345

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                T   L L       +E  K    ++ F+D++++    L++         +      
Sbjct: 346  ELDLTRGLLRLVALCWFCWESRKSGRGLIAFDDMLLHAGRALERN-------REYAGRFK 398

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             +L+DE QDT+ +Q  +IRS+  D             LF VGD KQSIY F  A+     
Sbjct: 399  EVLVDEFQDTNGLQDRLIRSVVSDGDA---------RLFLVGDLKQSIYRFRHADLSL-- 447

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                      + A +    + L +SFR+   +L  V+++F           D      H 
Sbjct: 448  -----FGSYISKARKGGRYVSLDVSFRTRDVLLDRVNRLFGHIWR------DGLGATLHH 496

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                 +    Q W                      + L  E      A  +A  ++ M+G
Sbjct: 497  RYESLRPPVDQPWHGARQDVSVAPWENIILEAGEDEKLSAEDRRDRSASLLAAKLTGMVG 556

Query: 359  TDTIFSNGKK--RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
             +TI+   +   R ++ +D+ +LV  R    L   + R L + + I +            
Sbjct: 557  EETIWDKAESSARTMRWRDVAILVPSRT---LFPSIQRVLGDLWGIPLHFEKNTGYYART 613

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
             ++D +AL R +  +ED L+    + SP    S  D  ++  +           +  +  
Sbjct: 614  EVQDCVALLRCLFDREDHLALAGYICSPFSGLSLADGSRLLDR--------SAGKDLSEE 665

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
               ++  +   +     I            ++       +F       V   L   ++  
Sbjct: 666  LRGQYPEIFARLERWREIGLVQGASRVMEELVADGAVLDRFAEWKRRGVAANLRRTVDLL 725

Query: 537  LRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
               E    + L    S L     ++       A   + + VR+MTVH +KGLE PVV + 
Sbjct: 726  REYESTLGNGLSGAASWLGEALRKRAKEEEAGAVGPDEDVVRVMTVHASKGLEFPVVVVA 785

Query: 592  DTGS--QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
               S  + F    +   ++  +L+ D G                      + + +EE  R
Sbjct: 786  GCDSNGKGFPSSLMPSAYLGAALSRDDG-------GNGDPISRKVHRLLEETAEKEESER 838

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            L YV  TRA D L++    +        + +W+DM   S   D+              + 
Sbjct: 839  LFYVACTRARDCLMLSGSWDP------PEDSWFDMAIRSGEVDKASD--------VDGDP 884

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                     PE  P+         ++                          +  +    
Sbjct: 885  PERSIERSLPERGPIVTISGSPGGLERISATSWALYRHCPYGWRLRFRQGLDLTWEQ--- 941

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPE--HKRKNFITSYC--TKNAKLWPAKEYKNLL 825
                       + G + H +L       +   K  +   S             +    L 
Sbjct: 942  --PDGETGGGPDMGSLAHWILARWDFSVDGLEKLLSSERSLLPGDLRPIWGDRETKDRLR 999

Query: 826  LSITRLLENPMMTTAM----SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF-I 880
              +  L+ +           S     E      +       ++ G +D +       + I
Sbjct: 1000 GWLVDLISSEEGRKLRPLRDSGYLMREAPFRVPLKDGP---LLVGAVDVMWPGDDGAYSI 1056

Query: 881  FEYK-THHHVPQEIEHIPYTHIAQLSIYEKIL 911
             +YK T        E +   +  QL  Y   +
Sbjct: 1057 RDYKIT--LEGGAPEGL---YEDQLRFYGLAV 1083


>gi|254427199|ref|ZP_05040906.1| UvrD/REP helicase subfamily [Alcanivorax sp. DG881]
 gi|196193368|gb|EDX88327.1| UvrD/REP helicase subfamily [Alcanivorax sp. DG881]
          Length = 673

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 213/635 (33%), Gaps = 123/635 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 K I+ Q  +++  D  + + K   ++               T   L  A     
Sbjct: 113 DSKEILKEILRQGESERDLDAVDVIHKRISDWKNALVLPEEAVSTAETDDDLRAAMA-YG 171

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+   +    +DF+DLI+    + +++     I  K    I ++L+DE QDT+  Q+E+
Sbjct: 172 GYDRMLRVCNAVDFDDLILMPARMFREQP---RILEKWRNRIQYLLVDEYQDTNGAQYEM 228

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ LT                  VGD+ QSIY++ GA P+ + + +              
Sbjct: 229 VKMLTL----------PEGKFTVVGDDDQSIYAWRGARPENLAQLQEDWPT--------L 270

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +++L  ++RST  IL   + V +   +    S  S                        
Sbjct: 271 KVVKLEQNYRSTGRILKAANTVIANNPHEFEKSLWSDY---------------------- 308

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    +   +++  D   +          IA  I         F    ++ +Q KD
Sbjct: 309 ------GYGEPIRFSALRDEEAET-------EWIASDI---------FHRRLQQGLQWKD 346

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             VL R    + ++    + L     I    +          IKDLM   R +++ +DD 
Sbjct: 347 FAVLYRGNFQSRILEMKLQSL----SIPYKVSGGKSFFSRSEIKDLMCYLRLLVNPDDDN 402

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYI 488
           +F+ ++ +P        + K+        + +Y     FA           K +   +++
Sbjct: 403 AFLRIINTPRREIGPATLEKLATWALKREQGLYHVCDDFALSEVMNPKAAEKLKKFKEWL 462

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN---- 539
                     +       ++         +      R G + I+ + + +    R     
Sbjct: 463 DTKRQFCFGQNSLQAVQELITDMDYEGWLMQNASSPRIGEKNIENIWQLVRSIERMLEKQ 522

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E+   S L+ +I +L       ++    + + V++MT+H +KGLE P V+++    + 
Sbjct: 523 EDEEEGASDLESVIKKLVLLDMLEQQQEEDDSDRVQLMTLHASKGLEFPHVYMMGVEEEF 582

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H                                      +++    E  RL+YVG+TR
Sbjct: 583 LPH-----------------------------------RTSIEEDNIVEERRLMYVGITR 607

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           A + L + +        +    T    V +   +D
Sbjct: 608 ARETLAMTQALTRKQYGERIDTTASRFVDEMPQDD 642


>gi|114319965|ref|YP_741648.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola
            ehrlichii MLHE-1]
 gi|114226359|gb|ABI56158.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola
            ehrlichii MLHE-1]
          Length = 1242

 Score =  257 bits (656), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 134/1013 (13%), Positives = 292/1013 (28%), Gaps = 148/1013 (14%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            GL   E +  +  D             +    ++E     + K     ++  + + +   
Sbjct: 216  GLDSPEGFAGVLDDRLQALERLKRPWREQFE-ALEAQFHALRKAVLNGRKYQKPEALMAA 274

Query: 66   FSLLSSFFLTQKFTPQKN------IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                +      +  P  +      +  + +       +   +     F  + D  +  ++
Sbjct: 275  MRAWAEDPAALQPEPVGSTSVLGRLCARGLAAGCRKGQTLPEDLHPGFTALDDYEHLCQL 334

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             ++ L     A ++   + +A+++   + F+DL+   +  L + +    +   + ++   
Sbjct: 335  PEADL-LNAAANWIGQRFHQAQRRRAQMGFDDLLTRLDQALTQGEAGERLAATLRRQFPV 393

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
             LIDE QDT  +Q+ + + +          +   + L  +GD KQ+IYSF GA+    L+
Sbjct: 394  ALIDEFQDTDPVQYRIFQRVYR-----VADNPREQALLLIGDPKQAIYSFRGADIHSYLQ 448

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +R                 LP +FRST  ++  V+++F   E A               
Sbjct: 449  ARRA---------TAGRHYTLPRNFRSTGAMVRGVNRLFQHAEQAWPEGAFLFRVAEENP 499

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     Q   + +  H +        W    + +  +      A   A  I  ++  
Sbjct: 500  V-PFLPVAAQGRAEALEVHGAAQPALTLWWEDEGEPVAGKHYLPRQAAACASHIVALLNA 558

Query: 360  DTIFSNGKKRV------IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                  G +        ++ +D+ VLVR   +   I    + L      SV  +DR  + 
Sbjct: 559  GAARQAGFRDPDGGLVSLRPRDMAVLVRDYNEARAIQ---QALARRRVRSVYLSDRESVY 615

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
               A  DL+   R       +      L +P       ++ ++                 
Sbjct: 616  RTDAAGDLLRWLRACAEPTVERLLRAALATPTLGLPVAELHRLTAD-------------- 661

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV----IDVL 529
                   ++  ++       + Q          +L       + ++R   E     +  L
Sbjct: 662  ----ELLWERRVEQFRGYRRLWQGQGVLPMLRRLLHDFAVPARLVARADGERVLTNLLHL 717

Query: 530  DEFLNFTLRNEQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             E L           + ++ L+       +          ++ + V+++TVH AKGLE P
Sbjct: 718  SELLQQAAAELDGEQALIRHLVEHRSGNGEGGDEQILRLESDEDLVKVVTVHKAKGLEYP 777

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL       F     K++  +          ++            +      ++   E
Sbjct: 778  LVFLPFIC--TFKPVDGKRLPYLDRTTGGAPRWLFEMD--------EETRARADRARLAE 827

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW------------------YDMVYDS 688
              RLLYV MTRA     +         +KSNQ                        +  +
Sbjct: 828  DLRLLYVAMTRARHACWLGLAPVKRGTRKSNQLHQSAVGYLLAGPEGVVDGGLEAALLRA 887

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
               +  +    L  + ++            P   P         +     +         
Sbjct: 888  RGEESAIAVTPLPAASDEGYRGPEHRPALGPARVPRRPAYEHWWIASYSALSLHAEPAAG 947

Query: 749  NDINEPYILNPSTI------------------DTKGKTNLESLLSDNQTFNRGLIIHKLL 790
              + EP   + ST                        +   +L    +    G  +H LL
Sbjct: 948  EAVGEPARASASTAPESVGQEIIRETVAEAGESAGPDSAALALHRFPRGPGPGTFLHGLL 1007

Query: 791  QVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKN-LLLSITRLLEN------------ 834
            +           ++   +     +  +     E+   +   + RLL+             
Sbjct: 1008 EWAADQGFAGLAEQPALLQREVARRCRRRGWSEWAGPVADWLLRLLQADYPLPEGGALRL 1067

Query: 835  -------PMMTTAMSCDSYSEVSVSGKINCP-------------KKDIIISGRIDQISIS 874
                   P +         +   +   +                  + ++ G ID +   
Sbjct: 1068 TALPSYQPELEFLFQTRWLNAARLDRAVTAATLDAAPRPPARAALLNGMLKGFIDLVCEQ 1127

Query: 875  QQNIFIFEYKTH---------HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
                ++ +YK++                  +   +  QL +Y   L      +
Sbjct: 1128 DGRYYVADYKSNWLGQGLEDYAPEALRAAVLARRYDLQLVLYTLALHRLLRAR 1180


>gi|226304347|ref|YP_002764305.1| exodeoxyribonuclease V beta chain [Rhodococcus erythropolis PR4]
 gi|226183462|dbj|BAH31566.1| exodeoxyribonuclease V beta chain [Rhodococcus erythropolis PR4]
          Length = 1105

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 134/1016 (13%), Positives = 268/1016 (26%), Gaps = 170/1016 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----ILKKAQTLQQASQTQCI 62
              ++                            + G  T       +    L  A + +  
Sbjct: 82   RSDDDLVAYLATADDEEIGVRRRRLLRALAEFDAGTITTTHSFCQRMLDGLGIAGEREPD 141

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF---IKIRDRFNTYKM 119
                  +             +  ++  +      K+ L  ++        I +     + 
Sbjct: 142  TTFVESVDDLISEVVSDLYLSRYSRTDSSPPFSTKDALAIARIAVGDGQAILEPDGEEET 201

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                      A  L    E  K+   + DF DL+   + +L   +       ++ ++   
Sbjct: 202  APGQRVLFAAAARL--EVERRKRTKGIRDFNDLLTLLHGVLTDPEYGPVACRRVREKFKV 259

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +LIDE QDT  +QW+++R                 TL  VGD KQ+IY+F GAE      
Sbjct: 260  VLIDEFQDTDPLQWDILRL----------AFHGHTTLVLVGDPKQAIYAFRGAEV----- 304

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                         Q  +  EL  ++RS   +L  ++ ++                  H+ 
Sbjct: 305  -----LSYLDAVDQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAHPVEASHKK 359

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            SR+     +++         +   P   S       L    +  + A  +      +   
Sbjct: 360  SRLSGPVPMRVRHL----PRTGAGPLNRSGFPAVGRLRSRVADDVAADVVGL----LGSD 411

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              +  +G  R ++  D+ VLVR  K   +I      +     +  V      +    +  
Sbjct: 412  ARLAVDGDPRPVEPGDVAVLVRTHKQVAMIRDALDAV----GVPSVLTGGSSVFATPSAT 467

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
              + L + I              SP+F  + +++                       G +
Sbjct: 468  QWLWLLQAIEQPHRSDRVRLTALSPIFGRTAEEL--------------------DVDGDN 507

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLR 538
                +   +     +         F  I       ++ ++    E     L        R
Sbjct: 508  VVAELAGQLRSYSGLFARVGFAAVFERISAETNLEKRVLAAPSGERDFTDLRHVAQLLGR 567

Query: 539  NEQNSYSSLQELISELEQY--------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    L  L+  L                R   ++   V+I TVH  KGLE P+V++
Sbjct: 568  VATEEAFGLSALVRWLSDRIKDPTSGSATDRSRRLDSDAAAVQIATVHATKGLEFPIVYV 627

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                   FS + +   +    L  DP     +          +      +     E  RL
Sbjct: 628  P------FSWESVGGFNSPTQLLHDPDGRRILDVGGQEGPGHNARKTVAEAEEAGEELRL 681

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--------------MVYDSFHNDERVK 696
            LYV +TRA  QL++    +    +    R                  +   +        
Sbjct: 682  LYVALTRAQCQLVLWWAPSYGTSRSPLHRLMLGRTPGIAEPARVVKVLDDGTTAARLATW 741

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                ++ I+ +    +  S            E      D         +         + 
Sbjct: 742  PAAASDVISVEPVGPHPPSPVQWSGAAANVTELAAARFDRDLDTLWRRTSYSALTAGAHH 801

Query: 757  LNPSTIDTKGKTNLESLLSD----------------------NQTFNRGLIIHKLLQVIF 794
               ST         +    D                            G ++H++L+V+ 
Sbjct: 802  AVTSTDSEVEDPEKDDEPEDSVDFGTVTPSPLEALPSPMNGLPAGAAFGTLVHEVLEVVD 861

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM----MTTAMSCDSYSEVS 850
            T     R           +      + + L  ++  +++ P+    + T    D   E+ 
Sbjct: 862  TAASDLRAELGIRCAEAVSVRAAEVDSEALADALLLVMQTPLGFGTLATIAPKDRLPELD 921

Query: 851  VSGKINCPKKDI----------------------------------------IISGRIDQ 870
                +      +                                         ++G ID 
Sbjct: 922  FELPLAGGDDPVSMSVTLRGVSELLRRHLPPDDILASYADHLDRVETSPMRGFLTGSIDA 981

Query: 871  ISISQQ-NIFIFEYKTHHHVPQEI------------EHIPYTHIAQLSIYEKILKD 913
            +      +  I +YKT+     ++            E +   +  Q  +Y   L  
Sbjct: 982  VLRIPGPSFVIVDYKTNRLGRGDLTAANYTRELMATEMMRSHYPLQALLYSVALHR 1037


>gi|282882609|ref|ZP_06291228.1| putative DNA helicase II [Peptoniphilus lacrimalis 315-B]
 gi|281297584|gb|EFA90061.1| putative DNA helicase II [Peptoniphilus lacrimalis 315-B]
          Length = 977

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 140/814 (17%), Positives = 274/814 (33%), Gaps = 137/814 (16%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y + K++  +LDF+DL+I  N+L++ +DVS     K++++  +ILIDE QD +++Q  +I
Sbjct: 283 YTKEKRQRGLLDFDDLLIYGNELVQNKDVSD----KLNKKFTYILIDEFQDVNILQNNII 338

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L            + + +F VGD +Q+IY F G+         ++ + +     ++  
Sbjct: 339 CGL------------NAKNIFIVGDPQQAIYGFRGSFIGIFDNFYKLFRDK----DKEIL 382

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            + +  ++R+ A I++ ++ +F+                          G V   +    
Sbjct: 383 TLNMNKNYRTDAFIISDINTLFNNI-------------------FTDYQGLVANNKASRK 423

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                 + + +                         I  ++  +            +KDI
Sbjct: 424 IEKYTVDDEDDYLKL---------------------IKYLLSEN-----------DSKDI 451

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R   +   +    +       I V    +  L     IK +++  R I ++ D  S
Sbjct: 452 GILARTNGELEKLETYLK----QNNIDVN-RGKINLKQTQVIKFILSFLRSIFNKNDFTS 506

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
           F+  + SP  + S + +  +  + + +           +   S     I    ++  I  
Sbjct: 507 FMDYISSPFCDLSFNSLVTVLLKGYRSID----EVCHGDISDSNLARAIDVYIKIKKIKN 562

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
             S        +   +     I +      D +      ++  ++   SS +     +E 
Sbjct: 563 VSSLDYLIKKCIDEFR-----IFKLNRNDWDYILILYEKSIEFKEKGLSSFRVFERYIES 617

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                K         V ++T+H +KGLE   V L++    + +    K            
Sbjct: 618 VEVNDKSQ------GVNLLTIHKSKGLEFKTVVLINMSKPLSNKTSQKITFNKKFGL--- 668

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                   S+  N     +    K    EE  R+LYV MTRA D+LIIC       EKK 
Sbjct: 669 -----AIDSQRSNGKFDLINNEQKDINFEEERRVLYVAMTRARDRLIICS------EKKQ 717

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
           +  ++  ++       + V   +    +  +E      + +         E    +    
Sbjct: 718 SPASYMSILNAPDKFFKEVNIDEEEYQVKVNEDTRKLINLN---------EAFKYRYRQN 768

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
             I   L      D                   L+          RG ++H   +     
Sbjct: 769 YSITDFLNYDYDEDAYLMKFFFNRDTKK-----LQGNTYYIDPKVRGNMLHFFAEHYNEE 823

Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
                  F+     ++       E + L+++   L +  ++        Y E+      N
Sbjct: 824 KIDDYIEFLFKIFKEDINGNKFNEIRELIVNYLNLRDKEIL--------YKELEFFYDFN 875

Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
                 I+ G IDQ+   +  I+I + KT        E +   +  QL  Y K+ K+ Y 
Sbjct: 876 ----GHIVRGFIDQVVYDE-AIYIVDLKTS---DLSEEELVKNYKWQLVFYSKVFKNIY- 926

Query: 917 NKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
            K +    IY S      +P    +K   E+  K
Sbjct: 927 KKEVKGAFIY-SLKHCKKVPVEINDKIINELDEK 959


>gi|269960508|ref|ZP_06174880.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834585|gb|EEZ88672.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1212

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 150/1019 (14%), Positives = 311/1019 (30%), Gaps = 163/1019 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSME-------TGNPTIL-----KKAQTLQQASQT 59
            +     + LW  P   + DI+ Y++ +          G+   L     K+   L+ A   
Sbjct: 181  ALAGEVRQLWGSPSDLLYDISNYLTGAPLILSVPAMQGSLADLHEQNLKQIDALK-AQWR 239

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------ 105
               ++  +L++   + ++   +K++ T                D  +KL+K         
Sbjct: 240  DSQDDFLALIADSDVNKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEK 299

Query: 106  ---------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                        +  + F    +           ++      +AK +   L F+DL+   
Sbjct: 300  TPKGTAPQHPVFEAIEAFLANPISLKAPLLAHAIEHCRVMLAKAKNQKQWLSFDDLLTQ- 358

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                   D +A +  +I       +IDE QDT  +Q+ +   +  D        +    L
Sbjct: 359  LSASIDTDETALLTERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLD--------NPECGL 410

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++
Sbjct: 411  FMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVLAVNQ 460

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
            +F++P++      D    I             ++W     +  +     QE+       L
Sbjct: 461  IFALPDSPFIYDSD----IPFHPVDYSPSADKRVWTMGGQKQPALTYWLQEAEDKP---L 513

Query: 337  PQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
            P+    + +A   A  I  ++     G   + +  K++ ++A DI VLVR   +  ++  
Sbjct: 514  PKGEYLTAMAEATASQIQTILTAAQQGQACLVNGEKQKPVKAGDIAVLVRTGSEGRMVK- 572

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
              + L      SV  ++R  +      +DL  L + +L+ E+D +    L S LF     
Sbjct: 573  --QALAGQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALDAA 630

Query: 452  DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
             +  +           E + + A     +++ +      L  +    S       +L  +
Sbjct: 631  SLDALNND--------ETVWENAVNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLEEE 682

Query: 512  KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAH 565
               Q          +  + E L        + +  L+ L   +              +  
Sbjct: 683  ASSQSENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAEHGLGGSDDQIQRL 742

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             +  N V+I+T+H +KGLE  +VFL                      ++     +   ++
Sbjct: 743  ESERNLVQIVTIHKSKGLEYDLVFLPFV-------------FGYREASEAKYYDVENDRT 789

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDM 684
                      +K   K    E  RL+YV +TRA     I           K      +  
Sbjct: 790  VLDITGNDASLKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGVHHSA 849

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE--------NTPLEREETIKQLMDE 736
            +     N +      L   + K +          P             E E    + +  
Sbjct: 850  IGYLVQNGQEGGINDLFVGLKKQQENLDNVVICEPPKQHDEMYVAEQTELEALTAKELQN 909

Query: 737  QKIPKKLFSPI---------KNDINEPYIL-------NPSTIDTKGKTNLESLLSDNQTF 780
                    +             + +    +       +    + +      S+ +  +  
Sbjct: 910  PIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEAELVEPERSIFNFPRGA 969

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPM--- 836
              G  +H L + I        +           ++    +    L   I  +L  P+   
Sbjct: 970  RPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDTVLATPLDSK 1029

Query: 837  ---MTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISGRI 868
               +          E+     I       +                         + G I
Sbjct: 1030 ALLLNQKAPAQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGMLKGFI 1089

Query: 869  DQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPNK 918
            D +   Q   ++ ++K++H             +     + +  Q  IY   L     ++
Sbjct: 1090 DLVFEHQGKYYVLDWKSNHLGDDVFHYHGDALKSAMADHRYDLQYQIYALALHRFLRSR 1148


>gi|257463715|ref|ZP_05628104.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
 gi|317061259|ref|ZP_07925744.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
 gi|313686935|gb|EFS23770.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12]
          Length = 717

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 97/515 (18%), Positives = 180/515 (34%), Gaps = 85/515 (16%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           KK      K+++   +   ++         +   +   Y+   K    +DF D+++NT  
Sbjct: 137 KKLASLISKLKEEGISADDYEKDNYEYEAKIIAEIYRRYDARLKNQNGIDFSDILLNTRK 196

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL   +    I  KI  +  +I++DE QDT+ IQ+E++  + +            R +  
Sbjct: 197 LLDIPE----ILEKIQNKYQYIMVDEYQDTNNIQYEIVNKIAQ----------KHRNICV 242

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGDE QSIY F GA  + +L  ++  Q           +++L  ++RSTA IL   + V 
Sbjct: 243 VGDENQSIYGFRGANIQNILNFEKDYQ--------DAMVVKLEQNYRSTAMILEAANAVI 294

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
               +++  +                     LW        ++ N  +       +   +
Sbjct: 295 RNNLSSKDKN---------------------LW-------TNKENGDKIKVLKALNQRDE 326

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                    ++   I+                   +D+ +L R    + +          
Sbjct: 327 -------VEKVISEIAKEKQKGRA----------YRDMTILYRTNAQSRVFEEAF----L 365

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
            Y+I               IKD++A    I +  D+ + + ++  P     +  + KI +
Sbjct: 366 RYRIPYKIFGGMQFYQRAEIKDILAYLSLINNPLDETNLLRIINIPKRKIGDKTLEKIRS 425

Query: 459 QRHETETVYEYIQKFANCGISK-------FQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
              E    +    + A              Q     I EL+ +A + +    F+ +LG  
Sbjct: 426 YAGEHSLTFFESLERAGEISGISSGLAGTIQQFYDLIQELMALAPYENTGVIFSTLLGKI 485

Query: 512 KGRQQF--ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SAN 568
             +Q            I  ++E     L     +      L   LE             N
Sbjct: 486 GYKQYLETAYEDAEARISNIEELGTSILE--LENLLGELSLRDYLENVSLVSATDDLQEN 543

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + +++MT+H AKGLE PVVFLV   ++ F     
Sbjct: 544 QDYIKLMTIHNAKGLEFPVVFLVGAENETFPGSSK 578


>gi|331018528|gb|EGH98584.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 669

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 99/646 (15%), Positives = 211/646 (32%), Gaps = 125/646 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   K    +DF
Sbjct: 129 DDGVDEIKNMIGSWKNDLILPAEALENARNPKE-----QTAAIVYTHYQRTLKAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILVPVKLFQEHPD---VLEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 233 --TRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLISNNPHAFEK---------------------QLWSEMGHGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCRNEDAEAERVAMEILTLH---------LRTDRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y   ++        +    + Q   +++  +        P  
Sbjct: 415 STTLEKLGNYATERKVSMYAATEEIGLGEHLDSRYTDRLQRFKRWMDGVRQQCAQNDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              +E      +  +   +      L  ++    +++E I +L
Sbjct: 475 ALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKL 534

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++    +    V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +         + +   +D   +    T +  K        +    
Sbjct: 620 GEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 665


>gi|57167988|ref|ZP_00367127.1| DNA helicase II (uvrD) [Campylobacter coli RM2228]
 gi|57020362|gb|EAL57031.1| DNA helicase II (uvrD) [Campylobacter coli RM2228]
          Length = 665

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 102/602 (16%), Positives = 202/602 (33%), Gaps = 125/602 (20%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
                 K        + +     K  +    +L        +Y+E   K+  +DF+DL++
Sbjct: 114 QFISHFKNESKSVQDVFNDLELLKDNEIKHQALQKIAIYYQNYQEYLLKHNFVDFDDLLL 173

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            TN LL+          +      +I +DE QDT+ +Q++++++L               
Sbjct: 174 LTNILLEND---QNFAKEQSSFYRYITVDEYQDTNALQYKILKNLC----------CVHE 220

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIYS+ GA+ + +L  +               +++L  ++RS   IL   
Sbjct: 221 NICVVGDDDQSIYSWRGAKIENILNFQSEFSN--------VKLVKLEQNYRSVGMILKAA 272

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + + S  +   G +                         + ++ + +             
Sbjct: 273 NNLISHNKKRLGKT------------------------LLCTKDEGEDI----------- 297

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +    +  I +  +A  I  ++ +           I A +I VL R    +  I     
Sbjct: 298 QILSSDNEKIESALVAKKIKELLNSG----------IYAGEIAVLFRINALSRSIEEAFM 347

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
             K    I           + L IKDL+   R +++  DDLSF  ++  P  +  E  + 
Sbjct: 348 KEK----IPYKLLSGMRFYERLEIKDLICYFRILINPNDDLSFKRIINRPKRSIGEKALQ 403

Query: 455 KI-CTQRHETETVYEYIQKFA--------NCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
            +    +    +++E + +              ++ +  I+ I++L   +      + F 
Sbjct: 404 NLEDYAQKRKISLFEALCESDGSVGIFSLKKAQNEAKKFIQNIYKLREYSDLKKMIEKFE 463

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRA 564
            +   K+     +   G+E +  +DEF        +     +L++++SE+          
Sbjct: 464 ELFALKEFYA--LQEDGDERVLNIDEFYASIKEKIKEEPQTTLEDILSEISLLSDQDGIE 521

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  V +M+VH +KGLE   VF+V      F                          
Sbjct: 522 ----GECVYLMSVHASKGLEFDHVFIVGLEEGFFPLN----------------------- 554

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                           +S  EE  RL YV +TRA   L +    +        +      
Sbjct: 555 ----------------ESDIEEERRLAYVAITRAKKCLSLSIAKSRFYRGSRTELDSSRF 598

Query: 685 VY 686
           + 
Sbjct: 599 LE 600


>gi|329296294|ref|ZP_08253630.1| exonuclease V subunit beta [Plautia stali symbiont]
          Length = 1179

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 118/876 (13%), Positives = 253/876 (28%), Gaps = 126/876 (14%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            Q       D F    +    L        +     + K+   +L F+DL+   ++ L++ 
Sbjct: 305  QHPLFAAIDTFLAQPLSLRDLVIARALVEVRHAVRKEKRLQALLGFDDLLSRLDEALQQP 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                 +   I Q     LIDE QDT  +Q+ + R                  L  +GD K
Sbjct: 365  G-GEQLAQAIRQRFPVALIDEFQDTDPLQYRIFR--------TLYLQQLQHALLLIGDPK 415

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    +R +       T          L  ++RS+  ++  V+++F     
Sbjct: 416  QAIYAFRGADIFTYIRARSEVHAHYT----------LDTNWRSSPAMVESVNQLFMRQPA 465

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                ++     +                 ++    D +       W              
Sbjct: 466  PFLFADIPFLPVNAAPPNQ----------RLSLSIDGEEQAALRFWLQPGAGCSVSEYQQ 515

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            ++A++ A  IS  +         +     +R +QA DI VLVR R +      L R   N
Sbjct: 516  LMAQQCAADISRWLQAGQQQRALLGKTPDQRPVQASDITVLVRSRNEAN----LIRAALN 571

Query: 399  DYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               I  V  ++R  +      ++L+ L + IL+ E +      L + LF F    +  + 
Sbjct: 572  QLGIPSVYLSNRDSVYTTPEARELLWLLQAILAPEQERMLRTALATSLFAFDAAQLDALD 631

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                  + + +          +++Q +      L  + Q          +L ++ G ++ 
Sbjct: 632  QDARGWDALVDTF--------ARWQQLWHQRGVLPMLRQLMLERQLAENLLASENGERRL 683

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNS---YSSLQELISELEQYPPTIKRAHSANHNEVRI 574
                       L E L        +       L + I+  +    + +    ++ + V+I
Sbjct: 684  TDLL------HLGELLQEAAAQLDSPHALVRYLAQQIARPDSQSASQQLRLESDRHLVQI 737

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            +T++ +KGL+ P+V+L                      +           +         
Sbjct: 738  VTIYKSKGLQYPLVWLPFVAG-------------FREADIALYHDREHYNAVLDLQNDEQ 784

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIIC------KHSNTSNEKKSNQRTWYDMVYDS 688
             +   ++    E  RLLYV +TR+     +              +   ++     ++   
Sbjct: 785  SLALAEQERLAEDLRLLYVALTRSVYHCSVGVAPLFRGTRKKEGDSDLHKSALGFLLQRG 844

Query: 689  FHNDERVKKIKLTN-------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
                       L +        +         W      +  L+     + L D  ++  
Sbjct: 845  EPATAEQLASLLHDISVTGTEVVLAQPQGHERWQALDQVDDELDARSVTRALADPWRVTS 904

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTN-------LESLLSDNQTFNRGLIIHKLLQVIF 794
                          ++     +  G+         + +          G  +H L + + 
Sbjct: 905  YSGLQQHGSHRLLDVMPGFDAEAVGEDRQAEVLEAVLTPHHFPHGAAPGTFLHTLFESLD 964

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP--MMTTAMSCDSYSEVSV 851
                                L         +  +    L      ++     +   E+  
Sbjct: 965  FTQPPSAVQLEQQLQQSGYPLHWQPMLSKWITRVVNTPLNTEGIRLSDITPGNRLIEMEF 1024

Query: 852  SG-------------------------KINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
                                        ++  +   ++ G ID +   Q   ++ +YK++
Sbjct: 1025 YLPIDGLLTAPALDALMRQDPLSRQAPPLDFRQVQGMLKGFIDLVFRWQGKYYLLDYKSN 1084

Query: 887  HHVPQEIEHIPY---------THIAQLSIYEKILKD 913
                    + P           +  Q  +Y   L  
Sbjct: 1085 WLGESHQAYTPQAMAQAMIDHRYDLQYQLYTLALHR 1120


>gi|28867353|ref|NP_789972.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850587|gb|AAO53667.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 669

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 96/608 (15%), Positives = 199/608 (32%), Gaps = 120/608 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  +  HY+   K    +DF+DLI+    L ++      +  K   ++ ++L+DE QD
Sbjct: 162 QTAAIVYTHYQRTLKAYNAVDFDDLILVPVKLFQEHPD---VLEKWQNKVRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L            +      VGD+ QSIY++ GA P+ ++  K      
Sbjct: 219 TNASQYLLVKLLIG----------TRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYP-- 266

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST+ IL   + + S   +A                       
Sbjct: 267 ------SLKVVMLEQNYRSTSRILRCANVLISNNPHAFEK-------------------- 300

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            QLW ++    +                + +  +    A R+A  I  +           
Sbjct: 301 -QLWSEMGHGDEI--------------RVIRCRNEDAEAERVAMEILTLH---------L 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +      D  +L R      LI    +     +++    +          +KDLMA  R 
Sbjct: 337 RTDRPYSDFAILYRGNYQAKLIELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           +++ +DD +F+ ++  P        + K+         ++Y   ++        +    +
Sbjct: 393 LVNPDDDNAFLRVINVPRREIGSTTLEKLGNYATERKVSMYAATEEIGLGEHLDSRYTDR 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
            Q   +++  +        P      ++              +E      +  +   +  
Sbjct: 453 LQRFKRWMDGVRQQCAQNDPIAALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEA 512

Query: 536 T---LRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
               L  ++    +++E I +L       ++    +    V++MT+H +KGLE P VF++
Sbjct: 513 LKNTLEKDEEGGMTIEEAIGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIM 572

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      ++  T EE  RL 
Sbjct: 573 GMEEEILPH-----------------------------------RSSIEADTIEEERRLA 597

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA   L     +      +         + +   +D   +    T +  K     
Sbjct: 598 YVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGN 657

Query: 712 YEWSTHHP 719
              +    
Sbjct: 658 TALADIRA 665


>gi|237801578|ref|ZP_04590039.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024438|gb|EGI04494.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 669

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 103/646 (15%), Positives = 211/646 (32%), Gaps = 125/646 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   K    +DF
Sbjct: 129 DDGVDEIKNMIGSWKNDLILPAEALENARNPKE-----QTAAIVYTHYQRTLKAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILMPVKLFQEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             S      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 233 --SRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +A                        QLW  +    +          
Sbjct: 283 ILRCANVLISNNPHAFEK---------------------QLWSDMGHGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +            R     D ++L R      LI
Sbjct: 313 -----RVIRCRNEDAEAERVAMEILTLH-------LRTDRP--YSDFVILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    + Q   +++  +        P  
Sbjct: 415 STTLEKLGNYATGRKVSMYAATDEIGLGEHLDSRFTDRLQRFKRWMDGVRQQCAQNDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              +E      +  +   +      L  ++    +++E I +L
Sbjct: 475 ALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKL 534

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++    +    V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +    +    + +   +D   +    T    K        +    
Sbjct: 620 GEIIDCSPSRFLDELPPDDLAWEGTDDTPVEVKAVRGNTALADIRA 665


>gi|332181236|gb|AEE16924.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
          Length = 710

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 95/618 (15%), Positives = 176/618 (28%), Gaps = 161/618 (26%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+   K    +DF+DLI     L K+      +  K  +   +I++DE QDTS+
Sbjct: 168 RTLYEEYQSGLKLYNAVDFDDLITLPIKLFKEHPD---VLAKYRERYKYIMVDEFQDTSI 224

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E +  L +            + +  VGD+ QSIYS+ GA  + +   +R        
Sbjct: 225 QQYEFMHLLAD------------KNVAVVGDDDQSIYSWRGANYENIRMFERDFP----- 267

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST  IL   + V S   N +  S                     L
Sbjct: 268 ---DVKEIRLEQNYRSTETILAAANGVISHNTNRKDKS---------------------L 303

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +        +   +       A  IA +I  +   +          
Sbjct: 304 W-------SGNGSGKPIEIYLPENEAAE-------ADFIAESIQGICMAEKR-------- 341

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +  D  VL+R    +  +         +  I    +          IKD+++  R   +
Sbjct: 342 -KYDDFGVLMRANTQSRALEEAF----LEANIPYTMSGGTSFFQRKEIKDVISYLRVCAN 396

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF---------------- 473
            +DD++ + ++ +P        I  I         ++++ I                   
Sbjct: 397 HDDDINLLRIINTPRRGIGRKTIEDINAVANERKCSLWDAINAILGTKAARVPESYGDDE 456

Query: 474 -------------------------------ANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                                          +          ++ I     +        
Sbjct: 457 DGESENFGTGSPESGLFGDMDGANAGIGGVVSEKTREDLASFVQLITTQRALLLGGKGLA 516

Query: 503 FFTLIL-GAKKGRQQFISRFGNEVID------VLDEFLNFTLRNEQNSYSSLQELISELE 555
                L          I  +             ++  +      E N  +    L + L 
Sbjct: 517 KKARALVDEIGYWDYLIGEYQKNEKAARFKFLNIESLIQSMEAWENNPDNFDPSLFNYLN 576

Query: 556 QYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +     +     +    +V +MT+H +KGLE PVVF+      +  H    +        
Sbjct: 577 RITLLSRDDMEDDSLKGKVNLMTIHASKGLEFPVVFIAGAEDGIIPHARSIEDGEENVEE 636

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           +                                  RL YV +TRA D+L I         
Sbjct: 637 E---------------------------------RRLFYVAITRARDKLFISSCRKRRKM 663

Query: 674 KKSNQRTWYDMVYDSFHN 691
           +   + T    + +   +
Sbjct: 664 QSVVECTPSRFLDEIPEH 681


>gi|262172724|ref|ZP_06040402.1| ATP-dependent DNA helicase Rep [Vibrio mimicus MB-451]
 gi|261893800|gb|EEY39786.1| ATP-dependent DNA helicase Rep [Vibrio mimicus MB-451]
          Length = 671

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 95/659 (14%), Positives = 219/659 (33%), Gaps = 123/659 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L+  L    +    +        M K       L  +   
Sbjct: 112 DQMALLKELTEKQLDGDKDLLRLLLSTISNWKNDMLTPLQAKAMAKGEQQ--QLFAHCFE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  +    LDF+DLI+    +L+  +    +R +    I ++L+DE QDT+  Q+E+
Sbjct: 170 LYQKQMQSYNALDFDDLILLPVLVLRSSEE---VRQRWQNRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 227 VKLLVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    +  S      +                 
Sbjct: 269 KLIKLEQNYRSTSRILRAANILIANNPHVYQKALFSELAEGEKL---------------- 312

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                               +   ++    A R+   I          ++      + +D
Sbjct: 313 -------------------KVILANNEDHEAERVTAEI---------IAHKFLNRTEYRD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----TQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++    +               +H  +++
Sbjct: 401 AFLRIVNTPKREIGPATLEKLGSYANMRGKSLFAASFELGLEQHLSGRGLDNLRHFTEWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRNEQNS 543
             +   A+  +  +    ++   +            +     +  + +  ++ + + +  
Sbjct: 461 VAIADNAERGNTVEAVRSLVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 544 YSS-----LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                   L+E++  L       +   + + + V++MT+H +KGLE P V+L+     + 
Sbjct: 521 NPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGIL 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL+YVG+TRA
Sbjct: 581 PHQTSID-----------------------------------EENVEEERRLMYVGITRA 605

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             +L            +  + +    + +   +D   +  K   S  +          +
Sbjct: 606 QRELTFMVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKKKPVSQEERMVKGQAHIAN 664


>gi|325279393|ref|YP_004251935.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
 gi|324311202|gb|ADY31755.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
          Length = 1054

 Score =  257 bits (656), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 142/866 (16%), Positives = 277/866 (31%), Gaps = 106/866 (12%)

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
            + ++    I    P L + L+   + F +    + + +M    L  L +   L       
Sbjct: 284  KTSLRKATIGSICPRLMQLLQDILNRFDQDYSYYLSARMLSDNLYQLGILNDLYQEVRAY 343

Query: 141  KKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
              +  ++    L+ +T  +L      + ++++  K      H++IDE QDTS +QW+  R
Sbjct: 344  CDEKGLM----LLSDTTHILNMLIADNDTSFLFEKCGNYYKHLMIDEFQDTSGMQWKNFR 399

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR-VLREKRINQKRATNAGQKFS 256
             L  +                VGD KQSIY +   +        +R             +
Sbjct: 400  PLVVNSLS------EGCRTMIVGDVKQSIYRWRNGDWSLLANEVERQFS------SLGVN 447

Query: 257  IIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             + L  ++RS  +I+   +  F             D+   ++ ++      G  Q+    
Sbjct: 448  TVILKNNWRSAPEIVNFNNTFFEKAVGMLTDLYIADAGGEVKEKTIAEAYQGLQQI---- 503

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                  +       +     +   E+        I   I               R  Q K
Sbjct: 504  --PRKKKKGYVDIVFGPDKKAEGGENIILADLIAIIRDIRQ-------------RGGQLK 548

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISV--VGNDRFILTDHLAIKDLMALGRFILSQE 432
            DI++LVR  K+  L+              +  + ND   +     I+ ++A+ ++++   
Sbjct: 549  DIVILVRGGKEGALVADFLMEYNKTADRPIGFISNDSLYVWSSPYIQFIIAILKYMVDPY 608

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL- 491
            D ++   +L                    + E   +    F+  G  +   V+    EL 
Sbjct: 609  DMVNKTQILYFYRVFI-------------QDENNPDLHDIFSGIGEKELFEVLGTDFELD 655

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
             +     S ++    IL     R++       E I  L  F +     E N+ +S+   +
Sbjct: 656  KNKIMSYSLYETIETILDKFSLRKK------REEIPYLIAFQDIIYEYETNNSNSITLFL 709

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM-- 609
               E+         S   + VRI+T+H +KGLE   V L     ++ S + ++++  M  
Sbjct: 710  DWWEKEQGKRVLTTSEEVDAVRILTIHKSKGLEFEFVLLPFCSWELDSVRPVRRIWCMNN 769

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +          SK  N I              +   LLYV +TRA  +L +  +S 
Sbjct: 770  EQGFNQLDYAPLNYSSKLTNTIFKKDYLDEHLKAYIDNLNLLYVALTRAKTELYVRPYSP 829

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
              N+  S   +       S   +  +            +    E      +    +   T
Sbjct: 830  KINKDGSISMSDIGAFIYSVLAETELVDNATM------QVALGEKQCFPSKAGAGQTSVT 883

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            ++     Q   +        D  EP   + S ID                   G ++H++
Sbjct: 884  LQNYPVFQPGERISIKYKFRDYTEPQQASLSAIDE------------------GKLLHEI 925

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
             + I        +    +Y      L   +E +     I   + NP  +     +  + +
Sbjct: 926  FKHI-RYAGDVSQAVQQAYLE---GLISIREKEAYCAKIEAYISNPQASEWFGPE--NNI 979

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                 I  P        R D+I  +   + I +YK               ++ Q+  Y  
Sbjct: 980  MNERDILFPGGRKT---RPDRIIFNGSVVRIIDYKFGQSEEN-------KYLKQVGFYCN 1029

Query: 910  ILKDSYPNKSLVCLLIYVSEPKVFII 935
             L+     K +   + YV   K+  +
Sbjct: 1030 TLRKM-GFKEVEGYVWYVKSGKIVQV 1054


>gi|327542150|gb|EGF28643.1| ATP-dependent DNA helicase PcrA [Rhodopirellula baltica WH47]
          Length = 787

 Score =  257 bits (655), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 113/693 (16%), Positives = 227/693 (32%), Gaps = 130/693 (18%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++  A  T+A  +   Y++       +DF+DL+ +   LL++      +R  +D+++ 
Sbjct: 155 AQQTGRAGDTVAAKVYPVYQQQLLTANAVDFDDLLFHFARLLRENPE---VRSNLDEKLK 211

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           +I++DE QDT+L Q+ ++R+L+ D             L   GD  QS+Y + GA+   +L
Sbjct: 212 YIMVDEYQDTNLAQYAIVRALSVD----------HPNLAVTGDPDQSVYGWRGADLNNIL 261

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             ++               + L  ++RST +IL V D++       +  +          
Sbjct: 262 DFEKDYPA--------VKTVRLEQNYRSTPEILRVADQLIRHNRRRKQKNLF-------- 305

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                     +  +   Y D   +       A  IA  I+N + 
Sbjct: 306 --------------------TDNPTGEAVTLRQYEDGYKE-------ADGIADEIANQMI 338

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                        + +D  ++ R    T  I    R    +  I     +         I
Sbjct: 339 AG---------NAEPRDFAIMCRMNALTRSIEHALR----NRGIPYQIVNGLEFYQRKEI 385

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG 477
           KDL+A    I +   D++F  ++ +P        + +I          + E  ++     
Sbjct: 386 KDLLAYLHLINNPRHDVAFQRVINTPTRGIGAKTLERIQRFADDHRIPMLEAARRVDEID 445

Query: 478 --ISKFQHVIKYIHELIHIAQ---FCSPHDFFTLILGAKKGRQQFISRFGNEVI----DV 528
               + + ++     L          +  D    ++   +           +        
Sbjct: 446 TLSKRAKTLVTSFIRLYDRLCIKATATLEDLLRFLIEEIQFVAYLERTTPEQQDNNPIAN 505

Query: 529 LDEFLNFTLRNEQNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +DEF++  +  +Q      SL+  + ++     T     S   N V +MT+H AKGLE P
Sbjct: 506 VDEFISAAVEFDQMHPEDGSLEAFLEQVALVSDTDAFEDSN--NRVTLMTLHAAKGLEFP 563

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF++     +  H+  K                                    ++  EE
Sbjct: 564 RVFIIAVEDNLLPHRRSK----------------------------------EDETQLEE 589

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI-------- 698
             RLL+VG+TRA   L I      S   ++        + +   ++ +V ++        
Sbjct: 590 ERRLLFVGVTRAEQWLQISYAKLRSFRGENQPAIPSMFLGELPRDEMQVVEVKGSRNFFD 649

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM-----DEQKIPKKLFSPIKNDINE 753
              +    D W   +      +  P  + E           D+  IP      +     +
Sbjct: 650 DAYDDEYPDSWDLVQEPAAVTDTGPAGQTEVADGPRILPMTDQSAIPDVYHDDVPPPKKK 709

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
              ++           L+S ++    +  G  +
Sbjct: 710 KPKVSIQAELKTASDLLQSGVTPLGAYREGSTV 742


>gi|33864183|ref|NP_895743.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
 gi|33635767|emb|CAE22092.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
          Length = 802

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 103/633 (16%), Positives = 207/633 (32%), Gaps = 99/633 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y +A   N      D        ++    +  IR        H+L+DE QD
Sbjct: 202 KLTVETYRRYRKALAANNA---LDFDDLLLLPVQLLQQNEQIRRYWHNRFRHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  D    +       R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYELIKLLVTDGREPETFEDWQGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +A++   + ++++L  ++RST+ IL   + + +           +T              
Sbjct: 319 KASDDSTR-TMVKLEENYRSTSTILEAANALIANNTERIDKVLRATR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  + T   D + +       A  + + +  +          
Sbjct: 365 ---------------GEGELITLTRCDDEIAE-------AEAVVHRMRML--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  D+ VL R    +  I          ++I  +        D   IKD++A  R
Sbjct: 395 AHPEFRWGDVAVLYRTNAQSRAIEESL----VRWRIPYIVVGGLRFYDRREIKDVLAYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  + ++    ++    ++      E ++        
Sbjct: 451 LLVNPADTVSLLRVINVPKRGIGKTTLQRLADAANQLGIPLWDVVSDAEAVRSLGGRSAK 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + I++L   +Q   P +    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCELINDLQCSSQDQIPSEMIQQVMEKSGYISELITEATDEAEERRRNLQELVNAA 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N  S+L+  ++          +      + V +MT+H++KGLE P+VFLV    
Sbjct: 571 LQYQEENEESNLEGFLASAALASDADSKD--TAADRVTLMTLHSSKGLEFPLVFLVGMEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                          +S+ EE  RL YVGM
Sbjct: 629 GLFPSYRSLD----------------------------------DQSSLEEERRLCYVGM 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         Q     +             +     +        +  
Sbjct: 655 TRAKERLFLSHASERRLWGGMRQPAVPSLFLAELPEGLVQGDLPQIGGVALRRERRLDRL 714

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
           T          +           + ++   P  
Sbjct: 715 TRVDRADNQRIKVGGVSGAPSNAVRRRQAGPAP 747


>gi|88797062|ref|ZP_01112652.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297]
 gi|88779931|gb|EAR11116.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297]
          Length = 1130

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 135/952 (14%), Positives = 268/952 (28%), Gaps = 126/952 (13%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            E+ + +  +       +     K                 + L +A++ Q ++     + 
Sbjct: 207  ENLDSLLAEHIDSWSDERETFLKLNKPRKAEVIALRDSLIEALDRAAEGQPLQALDPDVE 266

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            S F   K                       +       ++     T +  +    +L   
Sbjct: 267  SKFFNTKAK---------------------QAGLSVCRRLVHLTLTNEKARKLNLALDGV 305

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            +++      +K +   LDF DLII     L     +  ++  +  +    L+DE QDT  
Sbjct: 306  RFIREQLNASKARQDQLDFNDLIIQLRRAL-DGPHAVELQKALLDQFPAALVDEFQDTDP 364

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q++++  +             P  L  +GD KQ+IY+F G +    L  +         
Sbjct: 365  DQYQILNRIYH-------RQHGPHFLCMIGDPKQAIYAFRGGDVFAYLSAR--------- 408

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
              Q      +  ++RS+  ++   ++ F   +              HR            
Sbjct: 409  -EQATQQWTMDTNYRSSPSVIDGYNRTFLQSDAPVNPEAFGFGIEYHRILAAD-----DR 462

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
             + + S   S       S      +  ++     +A      I++++   T      +R 
Sbjct: 463  KDPIFSDDRSGVQWVHLSPADESVNTVKKEFQQSIADWCVQEIAHLLNDVT----KDERS 518

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            I A DI +LVR   +  L+    R        SV  + R  +      +DL  L   I  
Sbjct: 519  ITAGDIALLVRSYGEAQLLQDTLRRANLP---SVYLSARQNVFQTSEARDLYQLLNGIWQ 575

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             ++D  F+  L       +  ++ ++       E ++   Q                  +
Sbjct: 576  ADNDRLFLAALAGSWIGLNLIELDQLQH----DERLWAQWQT--------------RFVQ 617

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                            IL +    Q+  +         L E L       +   + L   
Sbjct: 618  WREDWTQRGLMSVLLEILQSHHRPQRDATERSLTNRLHLAERLQLESNQHRLPDALLHWF 677

Query: 551  ISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
               L++            ++   ++I+T+H AKGLE P+VF+        S +     H 
Sbjct: 678  ARALDEDTGEEDNQLRLESDDALIKIITMHGAKGLEYPIVFIPFASYYSASRQSPAFYHF 737

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                     +  +  ++  + E  RLLYV MTR  D+L  C   
Sbjct: 738  HDRETFASQWVYLSN---------DEQKQLTQEEDEAERIRLLYVAMTRPIDRLYCCLAP 788

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
             T   +     T    +  +      +     +        +           TP   + 
Sbjct: 789  FTGFAQSPLGLT----LKQASFELSDISAKVCSGQAATLMSVNERDIQTVTMTTPESPDT 844

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ-------TFN 781
            +I              S            + ST D      L S  +  +          
Sbjct: 845  SIAAEFHGHIERDWWLSSFSALTRHVGHSSHSTPDRDELDGLGSTETSTELRFRLAKGAE 904

Query: 782  RGLIIHKLLQVIFTLPEH--KRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMT 838
             G ++H  L+                    +  AK +   E++  +  +    ++   + 
Sbjct: 905  AGNLLHDTLEHCDFTNPDYPTLLEQARKRYSILAKSFTDDEFRQWIDELLHAPIDGFRLC 964

Query: 839  TAMSCDSYSEVSVSGK--------------------INCPKKDII---ISGRIDQISISQ 875
                  +  E                             P +  +   + G ID I   Q
Sbjct: 965  DLPKQKTLREAEFYFPMEDTPIDKLSAIIAQRRGETFQLPDRHRLKGMMHGFIDLIFEWQ 1024

Query: 876  QNIFIFEYKTHH---------HVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
               ++ +YK+ H                 +   +  Q +IY   L      +
Sbjct: 1025 GRYYVADYKSTHLGHQLTHYQPPSIRHSILSSHYDVQYAIYAVALHRYLAGR 1076


>gi|330836710|ref|YP_004411351.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
 gi|329748613|gb|AEC01969.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
          Length = 668

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 108/633 (17%), Positives = 200/633 (31%), Gaps = 121/633 (19%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           E+   +  E   +     T +    +     L  ++   Y+++ K    LDF+DLI+   
Sbjct: 131 EEADYNFFELASLFSDVKTGRASFRSDGKSEL-SHVYTEYQKSLKAYNALDFDDLIMLPL 189

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            L  +   +     +I +  +HIL+DE QDTSL Q+ +++ L  +           R L 
Sbjct: 190 RLFAEHPET---LAEIRKTYSHILVDEFQDTSLTQYSIVKELAWE----------HRNLC 236

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIYS+ GA  + ++  +    +R          I+L  ++RST  IL   + V
Sbjct: 237 VVGDDDQSIYSWRGANYRNIIMFESDFPERLE--------IKLERNYRSTGTILEAANNV 288

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                  +                        LW         +            D   
Sbjct: 289 IVHNTERKSKK---------------------LW-------TQESVGSMIHRLEPKDEDD 320

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +       A  I   I  +                 K+  VLVR     P++    RFL 
Sbjct: 321 E-------AAMIIGKIREL---------RFAHDYPWKNFGVLVRTNHMLPVLEN--RFLL 362

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            +       +      D   +KD+++  R +++ +DD+SF+ ++  P        I KI 
Sbjct: 363 TNT--PCKISGGASFFDRKEVKDIISYLRLLVNTKDDVSFLRVINVPRRGIGRKTIEKIR 420

Query: 458 T-QRHETETVYEYIQKFANC--------GISKFQHVIKYIHELIHIAQFCS------PHD 502
                   +++E     +                     I +                  
Sbjct: 421 ATAESNQCSLHEACSLVSIATDSGMKGNQKKTLADFFALIEDYREKLFHAGKNKSKVLMA 480

Query: 503 FFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
               I        Q+ +     N  +  +  F     R E++  ++   +   L +    
Sbjct: 481 LVENISYKDYVIDQYPTNEKAVNFKMGSIRTFNAMFGRWERDPDNNGSSVFDYLNRLAL- 539

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
             + ++ + ++V +MT+H +KGLE  VVFL      +  H                    
Sbjct: 540 SGKENTDDDDKVHLMTMHASKGLEFAVVFLAGIEDHIIPHARTL---------------- 583

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                               + +  E  RL YV +TRA   L I         K+     
Sbjct: 584 -----------------EENQDSLAEERRLFYVALTRARKHLYISTCMARHRGKELTASV 626

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
               + +   +    +  +   +  +D     +
Sbjct: 627 PSRFLLEIPAHLVTTEDEEAKPASKEDLSRILD 659


>gi|315445540|ref|YP_004078419.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
 gi|315263843|gb|ADU00585.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
          Length = 1091

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 148/1063 (13%), Positives = 299/1063 (28%), Gaps = 192/1063 (18%)

Query: 1    LKNRFG--LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
            +++R         +      DL   P    +      +L  E G    ++    L    +
Sbjct: 84   VRSRLARLAGAGLTIPAAGADLADDPVTIGTYHAFAGTLLREFGLMLPVEPDTRL--LGE 141

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK---------SQDEFIK 109
            T+  +  F ++               IT  + + +  L E L             D  + 
Sbjct: 142  TELWQLAFRVVCEHPAALDTDKSPASITAMVLRLAGQLSEHLVDTEQLRDTHVELDRLVH 201

Query: 110  IRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
                    +    +   L +            L        ++  V+DF   + +   L 
Sbjct: 202  TLPAGRYQRDRGPSQWLLRMLATQTERTMLVPLIDALHHRMREERVMDFGMQMASAARLA 261

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                    +  ++ Q    +L+DE QDT   Q   + SL                L AVG
Sbjct: 262  STHPA---VGEQLRQRYRVVLLDEYQDTGHAQRVALSSLFG------GGADDGLALTAVG 312

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D  QSIY + GA    + R          + G     +EL  S+R+  ++L + +     
Sbjct: 313  DPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPTLELRTSWRNPPEVLHLANAASVD 369

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                      S      +     + G+V+                             E+
Sbjct: 370  ARRR------SVEVRSLQPRPNAEPGSVRAALL----------------------SDVEA 401

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                +A ++A+           +  G      A    VLVR+  D   +        +  
Sbjct: 402  ERDWVADQVAHR----------WHGGLAASGTAPTAAVLVRRNADAAPMADAL----SRR 447

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             + V       L     + D++A+ R  +      + V +L  P +     D+  +  + 
Sbjct: 448  GVPVEVVGLAGLLAVPEVADVVAMLRVAVDPTAGAAAVRVLTGPRWRLGARDLTALWRRA 507

Query: 461  ----HETETVYEYIQK--------------------------FANCGISKFQHVIKYIHE 490
                    +  + +                             A    + +  ++    E
Sbjct: 508  VTLVDTGPSASDAVSATAEIVAKLEPDADDACLADAVCDPGPAAAYSPTGYARIVALGRE 567

Query: 491  LIHIAQFC--SPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSY 544
            L  +         D    I        +  +      G    + LD F +          
Sbjct: 568  LTALRAHLSSPLPDLVAEIRRTLGIDAEVRAAQPISAGWSGTEHLDRFGDVVAEFASRGT 627

Query: 545  SSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             +   L++ L+              + + + V+I+TVH AKGLE  +V +     +VF  
Sbjct: 628  PTASGLLAYLDTAEQVENGLAPAEVTVSSDRVQILTVHAAKGLEWQIVAVPHLVGRVFPS 687

Query: 601  KHIKKMHIMPSLNDDPGIP----------------IWIPQSKSRNNIVSDLIKHLKKSTQ 644
                +  +  + +  P +                   +   K  ++ ++     L +   
Sbjct: 688  TASARTWLTDAADLPPLLRGDCATVSAHGVPVLDTSDVSDRKGLSDKIAAHKSSLDQRRT 747

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-----DMVYDSFHNDERVKKIK 699
            +E  RLLYV +TRA   L++  H   + E K    + +     D++  S  +      I 
Sbjct: 748  DEERRLLYVAITRAEHTLLVSGHHWGATESKPRGPSTFLTEIRDVIDASTEDGRPCGSID 807

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK--------------------- 738
            +      D               P++     +  +D                        
Sbjct: 808  VWADAPADGETNPIRGRVVEAVWPVDPVAGRRGPVDRGAHLVAEVLSGECPEVGSDDDHG 867

Query: 739  --------IPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------LESLLSDNQTFNR 782
                    + ++  +  +   + P  L+ S +   G+                 +     
Sbjct: 868  WVADVDALLAERDLAAQRAVPSLPAQLSVSAMVELGRDPEAVAHRLQRRLPRRPDSHALL 927

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            G   H+ +Q  F       +          A     ++   L    T    +P       
Sbjct: 928  GTAFHEWVQRYFQA-----EKLFDLDDLPGAVDADRQDRGELDELQTAFAVSPWAA---- 978

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHI 901
                + + V    +      I+ GRID I         + ++KT   +P + E + +   
Sbjct: 979  ---RTPIDVEVPFDMMLAGRIVRGRIDAIFADGDGSFTVVDWKTG-EMPTDPEVLAHN-A 1033

Query: 902  AQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNK 942
             QL++Y       +  P  ++     YV   +   +P     +
Sbjct: 1034 LQLAVYRLAWARLHGCPTSAVRAAFHYVRSGRTV-MPDALPEE 1075


>gi|73543009|ref|YP_297529.1| ATP-dependent DNA helicase Rep [Ralstonia eutropha JMP134]
 gi|72120422|gb|AAZ62685.1| ATP-dependent DNA helicase Rep [Ralstonia eutropha JMP134]
          Length = 704

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 193/632 (30%), Gaps = 136/632 (21%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            + ++  A    A  +  +Y         +DF+DLI    +L  + +    ++ K    +
Sbjct: 159 AIAQAANADEHQAALVFRNYVATLNAYQAVDFDDLIRLPAELFARNET---VQLKWQNRL 215

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            + L+DE QDT+  Q+++++ L         +H       AVGD+ Q+IY + GA    +
Sbjct: 216 RYFLVDEYQDTNACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNL 269

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              +               +++L  ++RST  IL   + V +           S      
Sbjct: 270 RLLQTDFP--------DLKVVKLEQNYRSTVRILEAANAVIANNPKLFDKKLWSEH---- 317

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                G    + +                             +     A  + +      
Sbjct: 318 -----GMGDPIAINPM--------------------------NDEEHEAESVVFR----- 341

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               + ++  +R  Q +D  +L R      L   + R      +I  V +      D   
Sbjct: 342 ----LSAHKFERRAQFRDYAILYRGNHQARLFEQILR----RERIPYVLSGGQSFFDKAE 393

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ----- 471
           IKD+ A  R I + +DD +F+  + +P        +  + T   +   +++E        
Sbjct: 394 IKDICAYLRLIANPDDDPAFIRAITTPRRGIGNTTLEVLGTFAGQAKVSLFEAAMMGGIE 453

Query: 472 -KFANCGISKFQHVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVI 526
            K     +   +   + +  L   A          D    I         F  R      
Sbjct: 454 AKLQPRQLEPLRVFCESMVRLADRAAKDPATVVLDDLMEGIHYEAYLYDAFDERQAQSRW 513

Query: 527 DVLDEFLNFTLR---------------------NEQ-----NSYSSLQELISELEQYPPT 560
               EFL++  R                      +      N   +L EL   +      
Sbjct: 514 TNTLEFLDWLKRKGTKPEAEAEGEAEAEGEATGFDNADGFGNEGKNLLELTQTVALMSML 573

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
             R    + + VR+ T+H +KGLE P VFLV     +  H                    
Sbjct: 574 EGR--EEDPDAVRLSTLHASKGLEYPHVFLVGVEEGILPHCRED---------------- 615

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                           + +     EE  RL+YVG+TRA   L I         +++    
Sbjct: 616 ----------------EDMGDEKIEEERRLMYVGITRAQRSLHISWCKKRKRARETYSCE 659

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
               + +    +    K  +     KD   A 
Sbjct: 660 PSRFIGEMKLEEAPAPKDDMPAMSPKDRLGAL 691


>gi|29840740|ref|NP_829846.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC]
 gi|29835090|gb|AAP05724.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC]
          Length = 637

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 171/550 (31%), Gaps = 117/550 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++   +   LDF+DL+  T  L K+      IR +  +    +LIDE QDT+  Q
Sbjct: 166 IYKEYQQRLNETNALDFDDLLFLTVKLFKEFPE---IRKEYSELWKALLIDEYQDTNHAQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + + +++                +FAVGD  QSIYS+ GA    +L  ++   +      
Sbjct: 223 YMMAQTIAG----------KHHNIFAVGDPDQSIYSWRGANIHNILNFEKDYPRAL---- 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RS  +IL   + +     +       S                     
Sbjct: 269 ----VLRLEDNYRSYGNILNAANALIQNNVSRLKKDLRSVK------------------- 305

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +   +    D           A  +A  I  +              I 
Sbjct: 306 --------GPGEKIRVFLGKTDKEE--------AEFVAEEIYRLHKRA---------NIC 340

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +  R    +              +I               I+D++A  R   ++ 
Sbjct: 341 LRDICIFYRTNFQSRTFEDAL----LRRRIPYEILGGLSFYKRKEIQDILAFLRMFSAKC 396

Query: 433 DDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQ--------KFANCGISKFQH 483
           D ++F   +  P        I   I         + E  +        K +       + 
Sbjct: 397 DVVAFDRTVNLPKRGLGPTAISSLIDYALTNNLPMLEACKNALETQAVKLSKKQQEGLRC 456

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQ 541
            +    +L H  +  S ++F    +      Q          +    LDE  + T   EQ
Sbjct: 457 YLSIFQQLEHAYETLSLNEFVVATIRITGYLQVLKEDPDTFEDRKSNLDELASKTFEWEQ 516

Query: 542 NSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   SL+  + +L     T      A  + V +MT+H  KGLE  + FLV     +F H
Sbjct: 517 QNTEGSLESFLDDLALKSSTDDSELIA--DRVNLMTIHNGKGLEFRIAFLVGLEENLFPH 574

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            + K  +                                     EE  RL YVG+TRA D
Sbjct: 575 ANSKGNY----------------------------------ENLEEERRLCYVGITRAQD 600

Query: 661 QLIICKHSNT 670
            L +      
Sbjct: 601 LLYLTAAQTR 610


>gi|238784760|ref|ZP_04628763.1| ATP-dependent DNA helicase rep [Yersinia bercovieri ATCC 43970]
 gi|238714356|gb|EEQ06365.1| ATP-dependent DNA helicase rep [Yersinia bercovieri ATCC 43970]
          Length = 673

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 104/662 (15%), Positives = 213/662 (32%), Gaps = 121/662 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ + +  +    + D        +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLISQISNWKNDLLDPAAAAAQARSERD--KLFVHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+       +R +    + ++L+DE QDT+  Q+ +++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQNNLA---VRERWQNRLRYLLVDEYQDTNTSQYHMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     S      VGD+ QSIYS+ GA P+ ++       +          +I+L 
Sbjct: 233 ----------SRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ--------LQVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S                              
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E        +   ++    A R+            + ++   +  Q  D  +L R
Sbjct: 305 -----ELEYGDELKVITANNEDHEAERVV---------GELIAHHFVKKTQYSDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFMRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        I K+    +   ++++               G+   Q    ++  +I +
Sbjct: 407 NTPKREIGSATIQKLGEWAKVRDKSLFRASFDLGLGEHLKGRGLESLQRFTHWMEAIIRL 466

Query: 495 AQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E N   S
Sbjct: 467 VEREPVAAVRDLIHGIDYESWLFETSPSPKAAEMRMKNVNLLFSWMTEMLEGSELNEPMS 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LTQVVTRFTLRDMMERGESDGELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D +    +   S  +          +        +
Sbjct: 612 CKERRQYGELIRPEPSRFLMELPQDDLKWDNERQVVSPQERMQKGQSHLANIRAQLANAK 671

Query: 727 EE 728
           ++
Sbjct: 672 KQ 673


>gi|289525651|emb|CBJ15132.1| DNA helicase [Chlamydia trachomatis Sweden2]
          Length = 634

 Score =  257 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 174/547 (31%), Gaps = 118/547 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + + A Y+E  +    LDF+DL+  T  LL+  +    ++ +       +LIDE QDT+
Sbjct: 164 TRTVYAEYQEQLRAANALDFDDLLFLTEKLLRIPE----VQQEYANHWKALLIDEYQDTN 219

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L            +   +F VGD  QSIYS+ GA    +L  ++   +   
Sbjct: 220 HAQYLITKRLAA----------AHNNIFVVGDPDQSIYSWRGANISNILNFEQDYSQAL- 268

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RS   IL   + +          +  S                  
Sbjct: 269 -------VVRLEENYRSCGTILEAANALIQNNSARLEKTLRSVK---------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          +   +T   D           A ++   ISN+            +
Sbjct: 306 -----------GPGDKIFCFTGKNDRDE--------AEQVLEEISNLHS---------YK 337

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I   DI +L R    +                               I+D++A  R   
Sbjct: 338 DIPLSDICILYRTNFQSQSFEAAL----LKRGYPYEIIGGISFYKRREIQDILAFLRLFS 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH----- 483
           +  D  +F   +           +  +    +     + +           +        
Sbjct: 394 NNYDMAAFERTISLKKCGIGATTLAALMNYAKTTDLPILQACWDVLEKKSIRLTKKQQQG 453

Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLR 538
               + + H++  +   C  H+F    +                 +  + L++ L  T  
Sbjct: 454 LFSYLTHFHQMEQLYGNCDLHEFINETIRITDYLSILKEDLETYEDRKNNLEQLLAETQI 513

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++S  +L   + +L           +++H+ +++MT+H +KGLE PVVFLV     + 
Sbjct: 514 WGKSS-ENLPGFLEDLALKSSAD--ETASSHDRLKLMTIHNSKGLEFPVVFLVGLEENLL 570

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H + K MH                                     EE  RL YVG+TRA
Sbjct: 571 PHANSKGMH----------------------------------ENIEEERRLCYVGITRA 596

Query: 659 SDQLIIC 665
            + L + 
Sbjct: 597 QEYLYLS 603


>gi|317498206|ref|ZP_07956507.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894561|gb|EFV16742.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 655

 Score =  257 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 105/523 (20%), Positives = 178/523 (34%), Gaps = 111/523 (21%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LD+ DL+  +  + +K      IR K  + + +I+IDE QD   IQ+++++ L       
Sbjct: 222 LDYNDLLKFSLYIFEKN---KEIRLKWQKRLEYIMIDEFQDIDKIQYQLMKVLCGY---- 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                  + LF VGD  Q+IYS+ GA+   +L   +               I +  ++RS
Sbjct: 275 ------HKNLFIVGDPDQTIYSWRGADINYLLNFDKAFP--------DVKTIMMNENYRS 320

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  IL+V + +    +N                          L     S++        
Sbjct: 321 TPQILSVCNSLIDKNKNRMKK---------------------DLLPMCHSKNS------- 352

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                + D+  +ES        IA  I  +            + I  KDI +L R    T
Sbjct: 353 -VLYYHGDTSEEES------DWIADQIIKLHK----------KDISYKDITILYRAHYVT 395

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +           KI           + + +KD ++  R I   +DDLSF+ ++  P  
Sbjct: 396 RTLEETL----LKKKIPYSIYSGIQFFERMEVKDALSYLRMIT-YKDDLSFLRIVNVPKR 450

Query: 447 NFSEDDIFKICTQ-RHETETVYEYIQKFANCGISK---FQHVIKYIHELIHIAQFCSPHD 502
           N  +  +  +         + YE +++     I K    +  I  I       +  +  +
Sbjct: 451 NIGKKRMEFLQAYVNAHHCSFYEALKECVEDPIFKGTDAKDFISLIDAFSVTYEQRTISE 510

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
             + IL      +   +    E +D L E        E +       L   L+       
Sbjct: 511 VLSDILDRSGYEEMLRTTGNQERLDNLAELKQAVYDYEISCGEE-ALLPDYLDHIALFTN 569

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
              + + ++V++MTVH AKGLE P VFL      +F  K    +                
Sbjct: 570 SDVTDDSDKVKLMTVHAAKGLEFPHVFLCALNEGIFPSKKTSTI---------------- 613

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                 EE  RL +V M+RA   L + 
Sbjct: 614 -------------------EGMEEERRLAFVAMSRAMKSLFLS 637


>gi|260202354|ref|ZP_05769845.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289444772|ref|ZP_06434516.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289417691|gb|EFD14931.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
          Length = 1101

 Score =  257 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 131/960 (13%), Positives = 258/960 (26%), Gaps = 175/960 (18%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  +         +    +   L +            L     E      V+DF   +
Sbjct: 195  ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 254

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 255  ASAARLAATSP---QVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 305

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R          + G    ++EL  S+R+    L V
Sbjct: 306  LALTAVGDPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPVLELLTSWRNPPQALRV 362

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + + +           S      R       G V+                        
Sbjct: 363  ANGISAEARRR------SVAVRALRPRPDAPPGAVRCALL-------------------- 396

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                 ++    +A  +                     ++     VLVR+  D   I    
Sbjct: 397  --PDVQAEREWIADHLRMRYQRAEADG----------VKPPTAAVLVRRNADAAAIADTL 444

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I         L     + +++A+ R +       + + +L  P +     D+
Sbjct: 445  RA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 500

Query: 454  FKICTQR-----------------------HETETVYEYIQK------FANCGISKFQHV 484
              +  +                         +   + + I        ++  G  +   +
Sbjct: 501  AALWRRALTLSGESPSTASPESIAMAASVDADNPCLADAISDPGSAEGYSVAGYGRIGAL 560

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRN- 539
               +  L       S  D    +        +  +      G    + LD F +      
Sbjct: 561  AGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYA 619

Query: 540  ----EQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLV 591
                 ++S +S+  L++ L+              +   + V+++TVH AKGLE  VV + 
Sbjct: 620  ERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVA 679

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN--- 648
                 VF     +   +       P +      + +    V D      +    +     
Sbjct: 680  HLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEH 739

Query: 649  -------------RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------- 680
                         RLLYV +TRA D L++  H       K    +               
Sbjct: 740  RRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAA 799

Query: 681  ---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  +V          ++  L ++  +  W A   +    +              D  
Sbjct: 800  AGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLP 859

Query: 738  KIPKKLFSPIKN-------DINEPYILNPSTIDTKGKTNLE---------SLLSDNQTFN 781
                 +  P +        D++                 L           L+ D     
Sbjct: 860  GSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGAR 919

Query: 782  RGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--- 836
            +     +L+  +   P+      +   ++  +        +  +L  +  R + +P    
Sbjct: 920  Q-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELA 974

Query: 837  -MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQ 891
             +  A +  S++     +V      P  D ++ GRID + +       + ++KT      
Sbjct: 975  ALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRIDAVFVDPDGGATVVDWKTGKPPHG 1034

Query: 892  EIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                       QL++Y          P  S+     YV      +  +       A + T
Sbjct: 1035 PAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFYYVRSGITVVPDELPAPGELAMLLT 1092


>gi|326796663|ref|YP_004314483.1| ATP-dependent DNA helicase Rep [Marinomonas mediterranea MMB-1]
 gi|326547427|gb|ADZ92647.1| ATP-dependent DNA helicase Rep [Marinomonas mediterranea MMB-1]
          Length = 682

 Score =  257 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 112/599 (18%), Positives = 207/599 (34%), Gaps = 126/599 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L LA  +   Y+   +    +DF+DLI+    LL   D    +R K  +++ ++L+DE Q
Sbjct: 173 LLLAAQVYTQYQRYLRAYNAVDFDDLILLPVSLLISDDA---LRDKWQKKVRYLLVDECQ 229

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+E+IR L              R    VGD+ QSIY++ GA P+ + +       
Sbjct: 230 DTNTSQYELIRLLAGF----------RRCFTLVGDDDQSIYAWRGARPENLEQLSVDYPN 279

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +++L  ++RST  IL   + + +   +    S  S   I           
Sbjct: 280 --------LKLVKLEQNYRSTKTILKSANTLIANNPHVYDKSLWSDLGI----------- 320

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                           +P +   T   D+  +  +A I +R +   I             
Sbjct: 321 ---------------GDPIRVMVTRNEDAECERVAAEIQSRHLRNEI------------- 352

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                  KD  VL R      L+    +     Y+I    N          IKDLM   R
Sbjct: 353 -----PYKDFAVLYRGNHQARLLEIKLQA----YRIPYKMNGGTSFFSRAEIKDLMGYLR 403

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANC------GIS 479
            +++ EDD +F+ ++  P  +     + K+         ++       A         + 
Sbjct: 404 LLVNPEDDNAFLRVINLPRRDIGPATLEKVGLLANDLKVSLLAAAGDKALEESVSGKPLK 463

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLN 534
             Q   +++  L    +  SP      ++           +          I+ +   + 
Sbjct: 464 SIQEFTRWMDTLRKSLEKGSPIPVIEQMIYDIDYYGWLQEQASSPKAAERRIENVRFLIE 523

Query: 535 FTLR-----NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
              R      E+++ + L + I++L       ++    + ++V+++T+H +KGLE P VF
Sbjct: 524 SIQRMMESAWEEDADAGLDQAIAKLLLIDMLERQEEEEDEDKVQLLTLHASKGLEYPHVF 583

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+    ++  H                                      ++    EE  R
Sbjct: 584 LIGCEEELLPH-----------------------------------RNSIENDDIEEERR 608

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           L YVG+TRA   L I         K+       D +   F ++   + +      ++ E
Sbjct: 609 LAYVGITRAKRTLCITMA-----SKRRQFGEEMDCLPSRFLDELPPEDLVWEGRGDESE 662


>gi|126176198|ref|YP_001052347.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS155]
 gi|217975060|ref|YP_002359811.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS223]
 gi|125999403|gb|ABN63478.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS155]
 gi|217500195|gb|ACK48388.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS223]
 gi|315269414|gb|ADT96267.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS678]
          Length = 670

 Score =  257 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 103/611 (16%), Positives = 203/611 (33%), Gaps = 121/611 (19%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S F  Q        +TQ+   +  DL + L  +   +          +           A
Sbjct: 106 SLFDDQDTLALLKELTQDELDEDKDLLKALASTISNWKGGLIIPEHARKIAKDEQQHLFA 165

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y +  K    LDF+DLI+    LL+  +    +R +   +I ++L+DE QDT+ 
Sbjct: 166 M-LYQRYAQHMKAYNALDFDDLILMPTLLLRHHEE---VRTRWQTKIQYLLVDEYQDTNT 221

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  D                VGD+ QSIYS+ GA+P+ ++       +    
Sbjct: 222 SQYEMVKLLVGD----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGTDFPQ---- 267

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RS+  IL   + + +   +    +  S           G+   V  
Sbjct: 268 ----LKLIKLEQNYRSSQRILRAANILIANNPHVYDKALFSE-------LAYGEPLRVLF 316

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                        ++    A R+   I           +     
Sbjct: 317 ----------------------------AANEEQEAERVVAEIVR---------HKFVGR 339

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            Q  D  +L R    + L+           +I    +          IKD+M   + +++
Sbjct: 340 TQFGDYAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFARAEIKDIMGYLKLVVN 395

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQH 483
            +DD +F+ ++  P        + ++      +  +++  I +            S    
Sbjct: 396 PDDDNAFLRIVNLPKRGIGPSTLERLGNFANEKHISMFAAIFEPELNHHLPPAAMSSLYQ 455

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLR 538
             ++I E    A+   P +    ++               ++     +  + E   +   
Sbjct: 456 FGRFIVETGDHAERGEPVEAVKHLIRKINYEDYLYETSTSAKAAEMRMKNISELYRWVTE 515

Query: 539 N----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E +   +L E+++ L       + +     ++V++MT+H +KGLE P VF+V   
Sbjct: 516 MLAGDELDEPMTLPEVVTRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPFVFMVGVE 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            ++  H+                                       +   +E  RL YVG
Sbjct: 576 ERILPHQTSID-----------------------------------EDNVDEERRLAYVG 600

Query: 655 MTRASDQLIIC 665
           +TRA  +L   
Sbjct: 601 ITRAQRELWFT 611


>gi|34499523|ref|NP_903738.1| ATP-dependent DNA helicase [Chromobacterium violaceum ATCC 12472]
 gi|34105373|gb|AAQ61728.1| ATP-dependent DNA helicase [Chromobacterium violaceum ATCC 12472]
          Length = 673

 Score =  257 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 104/665 (15%), Positives = 203/665 (30%), Gaps = 122/665 (18%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                +  + K +S +   G       +  +    Q        +  S            
Sbjct: 62  AAREMLERVGKLMSSAEIRGITVSTFHSLGMHILRQEAPHLGYKTQFSILDAYDAGKIIA 121

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
           +I+      +   ++ ++   +++     D     +         ++       Y++   
Sbjct: 122 DILNTTSKDEIRKVQSQISLWKNDLKTPDDMLLAAQDQ-----WESVCAKTYLAYQDTLT 176

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               +DF+DLI     L ++      +  K   ++ ++LIDE QDT+  Q+++++ LT  
Sbjct: 177 AYQAMDFDDLIRLPVQLFREHPE---VLLKWQGKLRYLLIDEYQDTNTCQYQLVKLLTG- 232

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                          AVGD+ QSIY++ GA  + +   ++              +I+L  
Sbjct: 233 ---------VRGLFTAVGDDDQSIYAWRGANMENLRLLQQDFPA--------LKVIKLEQ 275

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RSTA IL   + V S           S   +                           
Sbjct: 276 NYRSTARILRAANSVISNNPKLFEKQLWSELGL--------------------------- 308

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             +        D           A  +            + ++  +   + KD  +L R 
Sbjct: 309 -GEPIHVVQCKD-------EEHEAETVVQR---------LLAHKFECRTEFKDYAILYRG 351

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                +     R    + +I           D   IKDL+A  R I + +DD +F+  L 
Sbjct: 352 NYQARIFEQALR----NQRIPYQMAGGQSFFDKPEIKDLLAYMRLIANPDDDPAFIRALT 407

Query: 443 SPLFNFSEDDIFKICTQRHE-TETVYEYIQKF------ANCGISKFQHVIKYIHELIHIA 495
           +P        + K+     +  ++++                ++  +    +I +L + A
Sbjct: 408 TPKRGVGAGTLEKLGAWAGQYGKSLFAAAHDAGLRVQVQQAQLAPLEQFCDFISQLQYRA 467

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                      +L A                       L E + +  +  +    +L EL
Sbjct: 468 TREEAGKLSLELLQAIGYEAWLYDSEDSPKIAETKWKNLLEMVAWLAKKGEADGKNLIEL 527

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              +        R      + VR+ T+H +KGLE P VFLV     +  H          
Sbjct: 528 TQTIALITMLEGRD-EGEVDAVRMSTLHASKGLEYPHVFLVGCEEGILPHS--------- 577

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                     + ++    EE  RL+YVG+TRA   L +      
Sbjct: 578 --------------------------ESVENGMVEEERRLMYVGITRAQRSLTLSYCVKR 611

Query: 671 SNEKK 675
               +
Sbjct: 612 RRAGE 616


>gi|192362002|ref|YP_001983850.1| ATP-dependent DNA helicase Rep [Cellvibrio japonicus Ueda107]
 gi|190688167|gb|ACE85845.1| ATP-dependent DNA helicase Rep [Cellvibrio japonicus Ueda107]
          Length = 672

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/640 (15%), Positives = 215/640 (33%), Gaps = 125/640 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 K ++ +E    +  L     +  +    +        + +    +      +  
Sbjct: 113 DARALLKELMLKEGELDNDHLDLVQHQISNWKNDLVHPTKALSLAQ--SPAEQTIALIYQ 170

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +A K    +DF+DLI+    L ++      +  +  ++I ++L+DE QDT+  Q+ +
Sbjct: 171 RYNQALKAYNAVDFDDLILIPVALFQEHPE---VLQRWQRKIRYLLVDEYQDTNSSQYLL 227

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +             L  VGD+ QSIY++ GA P+ +   KR             
Sbjct: 228 VQLLVGN----------RGGLTVVGDDDQSIYAWRGARPENMSLLKRDYPN--------L 269

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL V + + +   +    +  S              G  +    + 
Sbjct: 270 RLIKLEQNYRSTSRILRVANHLIANNPHEFDKALWSEM------------GLGEALRVIR 317

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
             ++                          A R+A  I          +   ++  + +D
Sbjct: 318 CANED-----------------------AEAERVATEI---------LTQRLRKQYKFRD 345

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             VL R      L+    +     ++I    +          IKDLMA  R I++ +DD 
Sbjct: 346 FAVLYRGNHQARLLELKLQ----QHQIPYKISGGSSFFAKTEIKDLMAYLRLIVNPDDDN 401

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKFQHVIKYI 488
           +F+ ++ +P        +  +         +++          +     + + Q    + 
Sbjct: 402 AFLRIINTPRRQIGTSTLEALGTYASERHISLFAALNEIGLQSRIPEKNLERLQRFAHWF 461

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQF-----ISRFGNEVIDVLDEFLNFTL------ 537
             +I       P      ++               S+   + ++ +   +          
Sbjct: 462 KGIIQQVSGSDPVAAIREMINDIDYETWLHQNSASSKAAEKRLENVYYLVESIQKTLDRS 521

Query: 538 -RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             +++   S +++ I++L       ++      ++V++MT+H +KGLE P VF+V     
Sbjct: 522 ADDDEGDDSRIEDAIAKLVLRDLLERQEEEDLSDQVQLMTLHASKGLEFPHVFMVGMEED 581

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +  H                                      ++ +  EE  RL YVG+T
Sbjct: 582 LLPH-----------------------------------RNSIEDNNIEEERRLTYVGIT 606

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
           RA   L +          + ++ T    + +   +D   +
Sbjct: 607 RAQRTLTLTLAGKRKQFGEMSETTPSRFLDELPPDDVEWE 646


>gi|160895970|ref|YP_001561552.1| exodeoxyribonuclease V subunit beta [Delftia acidovorans SPH-1]
 gi|160361554|gb|ABX33167.1| exodeoxyribonuclease V, beta subunit [Delftia acidovorans SPH-1]
          Length = 1274

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 141/998 (14%), Positives = 295/998 (29%), Gaps = 135/998 (13%)

Query: 1    LKNRFGLSLNESYELIYKDL--WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
            L +    ++ +    +      W     ++             G     +K Q  +    
Sbjct: 234  LADCLQRAMEQRRSRLLALAAGWDDKAQRLQLWLD--GQLDGHGALWDKRKLQPARYTGW 291

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTY 117
               + +         L      +  +  + + +       + L   +   ++        
Sbjct: 292  LAALADWSRAPLDGPLALTEAARHRLSPEGLAEAFKGSAGDVLMPLELAELQALLLQLEQ 351

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                S    L  A  +       K++     F D++   +  L   D  A +R +I  + 
Sbjct: 352  LPPVSVAVRLHAAARVAQRLAHLKRQAGSFGFADMLQRLDTALAG-DNGAVLRERILAQY 410

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               LIDE QDTS +Q+ +   +          +     L  +GD KQSIY F GA+    
Sbjct: 411  PVALIDEFQDTSPLQYRLFDQIYR-----TAANDPHSALLLIGDPKQSIYGFRGADIHSY 465

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L+ +R           +     L  ++RST  ++  V+  F+  E   G          H
Sbjct: 466  LQARRA---------TEGRHYVLGTNYRSTEALVGAVNHWFAQAEQRSGEGAFMFRRGSH 516

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-------LPQESSASILARRIA 350
                  +    Q   + +   D   +    +W++  D        L  +      A   A
Sbjct: 517  NPL-PFEPVAAQGRSEQLHTRDGAMHALTVAWSAGRDEDTGIPLPLAADEVRRRFAAHCA 575

Query: 351  YTISNMI---GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
              I   +       +  +G+   ++  DI VLVR  ++   +    R L+     SV  +
Sbjct: 576  EQIVQWLTDPQAGFVQPDGRLVRLRPADIAVLVRTGREAAAVR---RELQARAVASVYLS 632

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            D+  +       DL+   R + +  D  +    L + L   S D++  +           
Sbjct: 633  DQDSVFASDEAHDLLYWLRAVAAPLDAQAVRAGLATRLIGLSLDELAWLAAD-------- 684

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA--KKGRQQFISRFGNEV 525
            E      +  + +   +   +  L  + Q     D     L      G ++  +      
Sbjct: 685  EEAFDARSEQLRELHSIWLRLGVLAMLRQTLYRLDLPVRWLQDPAMGGERRLTNYL---- 740

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKG 582
               L E L       +   + ++ L +++E              ++ + V+++TVH +KG
Sbjct: 741  --HLAELLQTASAQLEGEQALIRWLATQIETPGSGSEEQVVRLESDADLVKLVTVHKSKG 798

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE P+V L   GS     +  +   +  S  D+        +    +    + +    + 
Sbjct: 799  LEYPLVCLPFAGS-FRPMERARTPFLTLSAQDESQDDAAPARRLLLD-FSDEELAQADRE 856

Query: 643  TQEEYNRLLYVGMTRASDQLII-------------------CKHSNTSNEKKSNQRTWYD 683
               E  RL YV +TR    L +                     +     E +S Q     
Sbjct: 857  RLREDLRLFYVALTRPRHALWLGLAPLKRGNGKACVNEQGAAGYLLGGTEPRSAQGWRDG 916

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE-------------ETI 730
            +      +     +      + +  W     +T   +    +                  
Sbjct: 917  LQQLCGEDPHMAWRDLDAVPLQRTRWQPPAGATPLHDAPAYDARFDTRWGIGSFSALVRA 976

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-----------QT 779
                    +P  +  P +++       +P   D  G   L+ L               + 
Sbjct: 977  MAAPSLPVLPVAVQRPAEDEQALEPPPSPELADIAGLAGLQPLQDGPAGGPAVWHRFLRG 1036

Query: 780  FNRGLIIHKLLQVI----FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
               G  +H  L+ +    F LP   +         +  +    ++ ++LL  +T ++  P
Sbjct: 1037 PVVGNFVHDQLEWLGGEDFALPVDGQGALADRLVRRCERAGRGEQARDLLAWLTAVVHQP 1096

Query: 836  MMTTA------MSCDSYSEVSVSGK-------------------------INCPKKDIII 864
             +         +     SE+                              +       ++
Sbjct: 1097 -LAPLDVTLATLGPQ-LSEMEFWLPARQLPAERIDQLCRRFILPGQERPALPQRSLHGML 1154

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
             G  D +   +   ++ +YK++H  P    +       
Sbjct: 1155 MGFADLVFCHEGRYWVLDYKSNHLGPDGAAYGQEALAR 1192


>gi|15605339|ref|NP_220125.1| DNA helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789347|ref|YP_328433.1| DNA helicase [Chlamydia trachomatis A/HAR-13]
 gi|237804958|ref|YP_002889112.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|3329053|gb|AAC68211.1| DNA Helicase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167877|gb|AAX50885.1| DNA helicase [Chlamydia trachomatis A/HAR-13]
 gi|231273258|emb|CAX10173.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436144|gb|ADH18318.1| DNA helicase [Chlamydia trachomatis G/9768]
 gi|296437072|gb|ADH19242.1| DNA helicase [Chlamydia trachomatis G/11222]
 gi|296438004|gb|ADH20165.1| DNA helicase [Chlamydia trachomatis G/11074]
 gi|297140506|gb|ADH97264.1| DNA helicase [Chlamydia trachomatis G/9301]
 gi|297748738|gb|ADI51284.1| PcrA [Chlamydia trachomatis D-EC]
 gi|297749618|gb|ADI52296.1| PcrA [Chlamydia trachomatis D-LC]
          Length = 634

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 174/547 (31%), Gaps = 118/547 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + + A Y+E  +    LDF+DL+  T  LL+  +    ++ +       +LIDE QDT+
Sbjct: 164 TRTVYAEYQEQLRAANALDFDDLLFLTEKLLRTPE----VQQEYANHWKALLIDEYQDTN 219

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L            +   +F VGD  QSIYS+ GA    +L  ++   +   
Sbjct: 220 HAQYLIAKRLAA----------AHNNIFVVGDPDQSIYSWRGANISNILNFEQDYSQAL- 268

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RS   IL   + +          +  S                  
Sbjct: 269 -------VVRLEENYRSCGTILEAANALIQNNSARLEKTLRSVK---------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          +   +T   D           A ++   ISN+            +
Sbjct: 306 -----------GPGDKIFCFTGKNDRDE--------AEQVLEEISNLHS---------YK 337

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I   DI +L R    +                               I+D++A  R   
Sbjct: 338 DIPLSDICILYRTNFQSQSFEAAL----LKRGYPYEIIGGISFYKRREIQDILAFLRLFS 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH----- 483
           +  D  +F   +           +  +    +     + +           +        
Sbjct: 394 NNYDMAAFERTISLKKCGIGATTLAALMNYAKTTDLPILQACWDVLEKKSIRLTKKQQQG 453

Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLR 538
               + + H++  +   C  H+F    +                 +  + L++ L  T  
Sbjct: 454 LFSYLTHFHQMEQLYGNCDLHEFINETIRITDYLSILKEDPETYEDRKNNLEQLLAETQT 513

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++S  +L   + +L           +++H+ +++MT+H +KGLE PVVFLV     + 
Sbjct: 514 WGKSS-ENLPGFLEDLALKSSAD--ETASSHDRLKLMTIHNSKGLEFPVVFLVGLEENLL 570

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H + K MH                                     EE  RL YVG+TRA
Sbjct: 571 PHANSKGMH----------------------------------ENIEEERRLCYVGITRA 596

Query: 659 SDQLIIC 665
            + L + 
Sbjct: 597 QEYLYLS 603


>gi|15610337|ref|NP_217717.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv]
 gi|15842787|ref|NP_337824.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551]
 gi|31794378|ref|NP_856871.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97]
 gi|121639086|ref|YP_979310.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|148663060|ref|YP_001284583.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148824397|ref|YP_001289151.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis F11]
 gi|215405207|ref|ZP_03417388.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 02_1987]
 gi|215432160|ref|ZP_03430079.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis EAS054]
 gi|224991578|ref|YP_002646267.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Tokyo 172]
 gi|253800237|ref|YP_003033238.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|254365824|ref|ZP_04981869.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            str. Haarlem]
 gi|254552298|ref|ZP_05142745.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis '98-R604
            INH-RIF-EM']
 gi|260188244|ref|ZP_05765718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|260206546|ref|ZP_05774037.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289448884|ref|ZP_06438628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289555474|ref|ZP_06444684.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
 gi|289575916|ref|ZP_06456143.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289747014|ref|ZP_06506392.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289755320|ref|ZP_06514698.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|297635848|ref|ZP_06953628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
 gi|297732844|ref|ZP_06961962.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN R506]
 gi|307085954|ref|ZP_07495067.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012]
 gi|313660177|ref|ZP_07817057.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN V2475]
 gi|2827611|emb|CAA16666.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis
            H37Rv]
 gi|13883113|gb|AAK47638.1| helicase, UvrD/Rep family [Mycobacterium tuberculosis CDC1551]
 gi|31619974|emb|CAD95318.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium bovis AF2122/97]
 gi|121494734|emb|CAL73215.1| Probable ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|134151337|gb|EBA43382.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            str. Haarlem]
 gi|148507212|gb|ABQ75021.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148722924|gb|ABR07549.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            F11]
 gi|224774693|dbj|BAH27499.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
            Tokyo 172]
 gi|253321740|gb|ACT26343.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|289421842|gb|EFD19043.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289440106|gb|EFD22599.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
 gi|289540347|gb|EFD44925.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289687542|gb|EFD55030.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289695907|gb|EFD63336.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|308364573|gb|EFP53424.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012]
 gi|323718065|gb|EGB27247.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551A]
 gi|328459972|gb|AEB05395.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
          Length = 1101

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/960 (13%), Positives = 257/960 (26%), Gaps = 175/960 (18%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  +         +    +   L +            L     E      V+DF   +
Sbjct: 195  ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 254

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 255  ASAARLAATSP---QVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 305

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R          + G    ++EL  S+R+    L V
Sbjct: 306  LALTAVGDPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPVLELLTSWRNPPQALRV 362

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + + +           S      R       G V+                        
Sbjct: 363  ANGISAEARRR------SVAVRALRPRPDAPPGAVRCALL-------------------- 396

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                 ++    +A  +                     ++     VLVR+  D   I    
Sbjct: 397  --PDVQAEREWIADHLRMRYQRAEADG----------VKPPTAAVLVRRNADAAAIADTL 444

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I         L     + +++A+ R +       + + +L  P +     D+
Sbjct: 445  RA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 500

Query: 454  FKICT-----------------------QRHETETVYEYIQK------FANCGISKFQHV 484
              +                            +   + + I        ++  G  +   +
Sbjct: 501  AALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGAL 560

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRN- 539
               +  L       S  D    +        +  +      G    + LD F +      
Sbjct: 561  AGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYA 619

Query: 540  ----EQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLV 591
                 ++S +S+  L++ L+              +   + V+++TVH AKGLE  VV + 
Sbjct: 620  ERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVA 679

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN--- 648
                 VF     +   +       P +      + +    V D      +    +     
Sbjct: 680  HLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEH 739

Query: 649  -------------RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------- 680
                         RLLYV +TRA D L++  H       K    +               
Sbjct: 740  RRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAA 799

Query: 681  ---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  +V          ++  L ++  +  W A   +    +              D  
Sbjct: 800  AGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLP 859

Query: 738  KIPKKLFSPIKN-------DINEPYILNPSTIDTKGKTNLE---------SLLSDNQTFN 781
                 +  P +        D++                 L           L+ D     
Sbjct: 860  GSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGAR 919

Query: 782  RGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--- 836
            +     +L+  +   P+      +   ++  +        +  +L  +  R + +P    
Sbjct: 920  Q-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELA 974

Query: 837  -MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQ 891
             +  A +  S++     +V      P  D ++ GRID + +       + ++KT      
Sbjct: 975  ALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRIDAVFVDPDGGATVVDWKTGKPPHG 1034

Query: 892  EIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                       QL++Y          P  S+     YV      +  +       A + T
Sbjct: 1035 PAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFYYVRSGITVVPDELPAPGELAMLLT 1092


>gi|260061427|ref|YP_003194507.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501]
 gi|88785559|gb|EAR16728.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501]
          Length = 1039

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 142/866 (16%), Positives = 278/866 (32%), Gaps = 124/866 (14%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL----ASLTLAK 131
            ++   +K + +++  + +  L + L        +        + F S      A  T+  
Sbjct: 281  KREFAEKPLYSKKTPEDTKALLDGLHPEFARQFETIRLRIYQRAFLSNAYQNSAPFTVLG 340

Query: 132  YLNAHYEEAKKKNCVLD---FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
             L    +  ++ + +L    F  +I    +L  +   + +I  ++ ++  H  IDE QDT
Sbjct: 341  LLQLELQRIQEADSLLPVARFNSII--AEELAGQP--APYIYERLGEKYRHYFIDEFQDT 396

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S +QW+ +  L  +   G++      +L  VGD KQ+IY + G + +   +   + Q   
Sbjct: 397  SELQWKNLVPLIGNALEGEDQQGRHGSLVLVGDVKQAIYRWRGGKAE---QFLGLIQGPG 453

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +   L  +FRS+  I+   +  FS+  +   LS ++ + +    +R       
Sbjct: 454  NPFSIDPTRAPLEKNFRSSQTIVDFNNDFFSVLSSR--LSNEAYSRLFLDGNRQLAHSRQ 511

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
              W ++  Q     + +                           I   +  +        
Sbjct: 512  PGWVEIQFQDPDAADSETAYLDRTV------------------EILERLRGE-------- 545

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
               +  DI VL R+RKD   ++           I V+ ++  +L +H  ++ L+ L R +
Sbjct: 546  -GYRLGDICVLTRRRKDGVALSDRLLAE----GIPVISSETLLLANHPTVRFLVDLLRLL 600

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                D      +L S L          I     +T  +      F    + + +     +
Sbjct: 601  QDPSDPNHAYGVL-SFLAPAGAGTHAWIRNHLGDTGELLVQEWSFDPG-VMRLKPAYDIL 658

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             E I                           R G      L   L   L   +N   S  
Sbjct: 659  EEAIRNF------------------------RLGGAADAYLFALLEHALDASRNGDVSPG 694

Query: 549  ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              +   +     +  A   N + +R+MT+H+AKGLE PVV      SQ++  K+ K    
Sbjct: 695  TFLEYWDSKKDKLSIAAPENPDALRLMTIHSAKGLEFPVVIFPFADSQIYGGKNPKLWLP 754

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDL---IKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
            +   +      + I   K   +  +      +  ++  + +   +LYV  TRA   L + 
Sbjct: 755  VDPESFCGFSYLQISSRKEVEHYGAAAAACYREEREKLELDAFNVLYVAHTRAIHALFVL 814

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                   E +   R             +           +      +             
Sbjct: 815  TGKAPDGETREPARYTDLYASYLRATGKWEDATCTYTFGSPAPAPGHR------------ 862

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
                        + P +   P+     +   L         ++      +       G  
Sbjct: 863  ------------EFPVRSPLPLGYSSRDAGRLR-----VVTRSGRLWDSAQEAAAAYGNT 905

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
            +H  L +I           I     +   L PA+E ++L   + +++ +P +        
Sbjct: 906  LHLALSLI--RTAADLPGVIPRLVGE--GLLPAEEKESLARLLEQVVHHPELAPYFEEG- 960

Query: 846  YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
             +E+     I    K I+   R D++ I +    I +YKT    P         H  QL 
Sbjct: 961  -AEIYNERDIILRNKVIL---RPDRLVIQEGRAVIIDYKTARPAPG--------HRDQLR 1008

Query: 906  IYEKILKDSYPNKSLVCLLIY-VSEP 930
             Y   +++    K    LL+Y     
Sbjct: 1009 GYASAIEEM-GLKIDRALLVYITDNG 1033


>gi|330876458|gb|EGH10607.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 669

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 100/646 (15%), Positives = 211/646 (32%), Gaps = 125/646 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   K    +DF
Sbjct: 129 DDGVDEIKNMIGSWKNDLILPAEALENARNPKE-----QTAAIVYTHYQRTLKAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILVPVKLFQEHPD---VLEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             S      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 233 --SRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLISNNPHAFEK---------------------QLWSEMGHGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCRNEDAEAERVAMEILTLH---------LRTDRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y   ++        +    + Q   +++  +        P  
Sbjct: 415 STTLEKLGNYATERKVSMYAATEEIGLGEHLDSRYTDRLQRFKRWMDGVRQQCAQNDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              +E      +  +   +      L  ++    +++E I +L
Sbjct: 475 ALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKL 534

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++    +    V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +         + +   +D   +    T +  K        +    
Sbjct: 620 GEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 665


>gi|308188858|ref|YP_003932989.1| DNA helicase II [Pantoea vagans C9-1]
 gi|308059368|gb|ADO11540.1| DNA helicase II [Pantoea vagans C9-1]
          Length = 720

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/552 (17%), Positives = 181/552 (32%), Gaps = 116/552 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   ++L+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNVLVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRMLAGD----------SGRVIIVGDDDQSIYGWRGAQVENIQRFLQDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 273 --GAETIRLEQNYRSTNNILKAANALIANNNGRLGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  S    F+ L +       AR +   I   +              
Sbjct: 310 -------TEGSDGEPISIYCAFNELDE-------ARFVVNRIKVWMENGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R + ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQSSMPYRIYGGMRFFERQEIKDALSYLRLMANR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++  ++       A    S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGVGDRTLDVVRQTARERQMTLWQATRELLQSRALAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L         H     ++        +    G +    I+ L+E +  T +   
Sbjct: 462 CELVDSLATETADLPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVTATRQFSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H+AKGLE   VF+V     +F 
Sbjct: 522 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGVTRAM 607

Query: 660 DQLIICKHSNTS 671
            +L +       
Sbjct: 608 LKLTLTYAETRR 619


>gi|294993862|ref|ZP_06799553.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210]
 gi|326902572|gb|EGE49505.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148]
          Length = 1101

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/960 (13%), Positives = 257/960 (26%), Gaps = 175/960 (18%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  +         +    +   L +            L     E      V+DF   +
Sbjct: 195  ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 254

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 255  ASAARLAATSP---QVGRDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 305

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R          + G    ++EL  S+R+    L V
Sbjct: 306  LALTAVGDPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPVLELLTSWRNPPQALRV 362

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + + +           S      R       G V+                        
Sbjct: 363  ANGISAEARRR------SVAVRALRPRPDAPPGAVRCALL-------------------- 396

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                 ++    +A  +                     ++     VLVR+  D   I    
Sbjct: 397  --PDVQAEREWIADHLRMRYQRAEADG----------VKPPTAAVLVRRNADAAAIADTL 444

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I         L     + +++A+ R +       + + +L  P +     D+
Sbjct: 445  RA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 500

Query: 454  FKICT-----------------------QRHETETVYEYIQK------FANCGISKFQHV 484
              +                            +   + + I        ++  G  +   +
Sbjct: 501  AALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGAL 560

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRN- 539
               +  L       S  D    +        +  +      G    + LD F +      
Sbjct: 561  AGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYA 619

Query: 540  ----EQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLV 591
                 ++S +S+  L++ L+              +   + V+++TVH AKGLE  VV + 
Sbjct: 620  ERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVA 679

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN--- 648
                 VF     +   +       P +      + +    V D      +    +     
Sbjct: 680  HLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEH 739

Query: 649  -------------RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------- 680
                         RLLYV +TRA D L++  H       K    +               
Sbjct: 740  RRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAA 799

Query: 681  ---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  +V          ++  L ++  +  W A   +    +              D  
Sbjct: 800  AGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLP 859

Query: 738  KIPKKLFSPIKN-------DINEPYILNPSTIDTKGKTNLE---------SLLSDNQTFN 781
                 +  P +        D++                 L           L+ D     
Sbjct: 860  GSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGAR 919

Query: 782  RGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--- 836
            +     +L+  +   P+      +   ++  +        +  +L  +  R + +P    
Sbjct: 920  Q-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELA 974

Query: 837  -MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQ 891
             +  A +  S++     +V      P  D ++ GRID + +       + ++KT      
Sbjct: 975  ALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRIDAVFVDPDGGATVVDWKTGKPPHG 1034

Query: 892  EIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                       QL++Y          P  S+     YV      +  +       A + T
Sbjct: 1035 PAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFYYVRSGITVVPDELPAPGELAMLLT 1092


>gi|50084109|ref|YP_045619.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
 gi|49530085|emb|CAG67797.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1]
          Length = 679

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 104/632 (16%), Positives = 212/632 (33%), Gaps = 126/632 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N+   E  +      +K+   +++ I      +T +  +          +L   YE  
Sbjct: 127 RDNLSGAESKELIAKAMKKISDWKNDLIVPEQAHSTCETVEDVQ-----FAHLYQLYERN 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI+    LL++    A +R K      ++L+DE QDT+  Q+ +++ L 
Sbjct: 182 LRAYNAVDFDDLIVLPTRLLQEN---AEVRDKWQNRTRYLLVDEYQDTNTAQYILVKLLV 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ QSIY++ GA+P+ +   K               +I+L
Sbjct: 239 GVMGQ----------FTAVGDDDQSIYAWRGAKPENMALLKEDFPN--------LKVIKL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST+ IL   + V     +       S              G  ++   +  ++D 
Sbjct: 281 EQNYRSTSRILKAANAVIENNPHIFDKKLWSDK------------GHGEVIRIITCRNDD 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
             +                             + +++    +           KD  VL 
Sbjct: 329 DESE--------------------------RVVKDLMTHKLMNGK------NWKDYAVLY 356

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      ++    R ++    I    +          IKD+M+  R I++ EDD +F+ +
Sbjct: 357 RGNFQARVLETQLRQMQ----IPYKLSGGQSFFARAEIKDVMSYLRLIINPEDDSAFLRI 412

Query: 441 LKSPLFNFSEDDIFK--ICTQRHETETVYEYIQKFANCGISK-----FQHVIKYIHEL-I 492
           + +P        + K  + +Q +    +     +  +  I K           +I     
Sbjct: 413 INTPKRAIGPVTLEKLGLFSQENHLSLLAAAADQRLSMVIPKKAASQLHEFADFITTFTR 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNFTLRN----EQNS 543
            +     P      ++           +           D ++   +         E   
Sbjct: 473 ELLDDDEPVPKVRQMMNEAGYIDYIREQAATPAQEKTKLDNIESLFSSIQNLLNRTEDVD 532

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++ +I +L       ++    + ++V ++T+H AKGLE P V+++    ++  HK+ 
Sbjct: 533 EKNIESVIRKLVLLDMLEQQQEEEDTDKVNLLTLHAAKGLEFPFVYIMGLEEELLPHKNS 592

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              +   T EE  RL+YVG+TRA   L 
Sbjct: 593 -----------------------------------IAADTIEEERRLMYVGITRARQGLT 617

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +       N  +  Q T    + +   ++   
Sbjct: 618 LTLAEQRKNGGQMKQMTPSRFLDELPQDELEW 649


>gi|269115227|ref|YP_003302990.1| ATP-dependent helicase [Mycoplasma hominis]
 gi|268322852|emb|CAX37587.1| ATP-dependent helicase [Mycoplasma hominis ATCC 23114]
          Length = 745

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/560 (17%), Positives = 180/560 (32%), Gaps = 105/560 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+   +++  LDF+DL++    L  +    +++  +  +  ++ILIDE QD
Sbjct: 183 AIKEKIYERYQLHLERSHSLDFDDLLVFVYKLFYEP-KFSFVAERWKKRFDYILIDEFQD 241

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS++Q+ +++ L  +             L  VGD  Q+IYS+  A+   ++   +     
Sbjct: 242 TSILQYRIMQKLANE------------HLTIVGDPDQTIYSWRNADINIIMNFDKDYPNS 289

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     ++L  ++RST  IL   + + S  +                         
Sbjct: 290 V--------TVKLEENYRSTKTILRAANNLISHNKLRLEKKLF----------------- 324

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                      +++     E +  + D           AR IA  IS +           
Sbjct: 325 ----------TENEEGENIEFYCGFNDEAE--------ARWIATKISELKRN-------- 358

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +Q K+I +L R    +  I                            +KD +A  R 
Sbjct: 359 --RVQLKNIAILYRTNSCSRAIEEAL----IKENTIYKLFGSIKFYQREEVKDALAYLRV 412

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF----- 481
           I     ++S + ++  P        I K+    +     ++EY++   N    +      
Sbjct: 413 IHD-GSEISLLRIINKPSRKIGNVTIEKLLSASKKYNLGLFEYLETHFNQIQKELHISGD 471

Query: 482 -----QHVIKYIHELIHIAQFCSPH-DFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFL 533
                 + I  I       Q  + H     LI+   K   +  +        ID  +  +
Sbjct: 472 TLKNLANFINEIRWARRAIQTNAIHLTIKELIVNKIKYFDEIKNSEEEYENKIDNFNSLI 531

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVD 592
                 E+ +      +   L++      R    +    V +MTVH +KGLE   VF+  
Sbjct: 532 EAIAEWEKKNPQG--SIDEYLQEITLITDRDVEDDAASFVSLMTVHNSKGLEFDYVFVAC 589

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F  K    +                                      EE  RL Y
Sbjct: 590 LAENIFPLKRAISISPQDDFTFLNSKNF-----------------KENIEGLEEERRLAY 632

Query: 653 VGMTRASDQLIICKHSNTSN 672
           V MTRA  +L++      + 
Sbjct: 633 VAMTRAKKRLMLSFSVGRNG 652


>gi|330503685|ref|YP_004380554.1| DNA helicase/exodeoxyribonuclease V subunit beta [Pseudomonas
            mendocina NK-01]
 gi|328917971|gb|AEB58802.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas
            mendocina NK-01]
          Length = 1209

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 151/1037 (14%), Positives = 302/1037 (29%), Gaps = 153/1037 (14%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            L   +    + K  WP+   ++  +      +        LK+    +   + +      
Sbjct: 220  LGERDRQLQVLKQPWPIWAEELELLLDGARDAKAFNGSK-LKQPDYKRWFVKLKEWA--- 275

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
              L            + +    + +                  +           +  A 
Sbjct: 276  --LGDAANLDLGKGFERLTPDGLAEAWKGEPPDHPALAAM--ALLKSQLDALPDPADAAL 331

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
               A ++   ++  K++   + F+D+++  +  L+  +    +   I ++    +IDE Q
Sbjct: 332  RHAAAWVRQRFDWEKRQRAEMGFDDMLVRLDAALQGSN-GPRLAEVIRRQFPVAMIDEFQ 390

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +Q+ +  +L E        +     LF +GD KQ+IYSF GA+    LR +R    
Sbjct: 391  DTDPLQYRIFDTLYE-----VEANRDDCGLFMIGDPKQAIYSFRGADIHTYLRARRA--- 442

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                         L  +FRS+  ++  V+ VF   E  +                +G  G
Sbjct: 443  ------TFGRHYNLEKNFRSSQAMVDAVNGVFLRAEQRESGEGAFLLRDDLPFIEVGAQG 496

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIGTDTIFSN 365
              ++W       D Q  P    W    D  + + +    +A   A  I  ++        
Sbjct: 497  RGEVWSV-----DGQAQPALTVWQLASDEPVAKGAYLDAMAAGAASEIVRLLDLGQRGQA 551

Query: 366  GKKR-----VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            G  +      ++  DI VLVR   +   I             SV  +D+  +      +D
Sbjct: 552  GFSKEGALGALRPSDIAVLVRDFNEAQAIRGELAA---RGVRSVYLSDKDSVFAAQEARD 608

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+   R     + D      L S     +  ++ ++         + E   +        
Sbjct: 609  LLLWLRACAEPDQDRPLRAALASATLGLALAELEQL--------NLDERTWERRVMQFRD 660

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            ++   +    L  + Q     +    ++G   G +   +         L E L       
Sbjct: 661  YRQRWQRQGVLPMLRQLLQDFELPQRLMGRDDGERVLTNLL------HLAELLQQAAAEL 714

Query: 541  QNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                + ++ L   L    Q          ++   VR++T+H +KGLE P+VFL    +  
Sbjct: 715  DGELALIRHLSELLAGEGQAADEQVLRLESDEALVRVVTIHKSKGLEYPLVFLPFICA-- 772

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                        P  +  P       + +       D +   ++    E  RLLYV +TR
Sbjct: 773  ----------FRPVDDKKPLQIHDGERRQLVLKPDEDSLARAERERLGEDLRLLYVALTR 822

Query: 658  ASDQLII-------------------CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
            A     +                     +     E  +      D +       E     
Sbjct: 823  ARHACWLGVADLKIGNGKKSRLHESAIGYLLGGGEPLAASAALVDWLTPFAAGLESTVAP 882

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREE-----TIKQLMDEQKIPKKLFSPIKNDINE 753
              T S  +   I  E    H         E     +   L  ++  P ++        + 
Sbjct: 883  VPTASEQRYRVIDEERFEPHWRTPVRRAAEHWWIASYSALRLDEDAPSQISRHEDAAPDS 942

Query: 754  PYILNPSTIDTKGKTNLESLLS------DNQTFNRGLIIHKLLQV--------IFTLPEH 799
            P + N    ++          S        +  N G  +H LL++        +   P  
Sbjct: 943  PAMQNAIDDESPLLALAPLPASAQGLHRFPRGPNPGTFLHGLLEMAAQEGFAILAQNPAK 1002

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL-----ENPMMTTAMSCDSYSEVSVSG- 853
             R+        +  + W       LL  +TR L     ++ ++          E      
Sbjct: 1003 LREALARRCQRRGLEGWIDPLQDWLLALLTRPLPVDGADSLVLAQLTQYQPELEFWFEAR 1062

Query: 854  ----------------------KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
                                   +     + +  G ID +   Q   ++ +YK++     
Sbjct: 1063 GVDVRLLDQWVQQCELPGIARQPLRADTLNGMFKGFIDLVFEHQGRYYVADYKSNWLGSD 1122

Query: 892  EIEHI---------PYTHIAQLSIYEKILKDS---------YPNKSLVCLLIYVSEPK-- 931
            +  +           + +  Q  +Y   L            Y       L +++  P+  
Sbjct: 1123 DSAYTCDAMETAIASHRYDLQYVLYVLALHRQLRLRLPDYDYDQHVGGALYLFLRAPQQG 1182

Query: 932  -VFIIPQNKLNKAFAEI 947
                 P  +L +    +
Sbjct: 1183 AYLARPPRELIERLDAL 1199


>gi|328951182|ref|YP_004368517.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
 gi|328451506|gb|AEB12407.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884]
          Length = 900

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 132/904 (14%), Positives = 283/904 (31%), Gaps = 113/904 (12%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A+ L+  +    ++  F +LS+   T  F  +   +   +  + P L+  L    ++   
Sbjct: 95  AELLRLVAPAMGLDPDFQVLSAGDATGVFREEVRALLY-LRGEDPGLEAPLMHLYEKRAL 153

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            R+        +   A    A+     Y         L   D+ +    +L +    A  
Sbjct: 154 ARELRPAGPGAERLWALFRAAER---RYLARLGGR-ALGPADVELRAVQMLTEPPNGA-- 207

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             +I     H+L+DE QDT+ +Q +   +L           ++  ++  VGD KQSIY+F
Sbjct: 208 LERIRGRYAHVLVDEYQDTNPLQGQAFEAL----------EAAGVSIEVVGDPKQSIYAF 257

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             A+     R  R                 L +S+R    +++ ++++            
Sbjct: 258 RNADVAVFRRALRR----------GVVEAPLAVSYRHAPGLVSFLNRLTQAFAERGWGFG 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                    +   G  G ++L         ++                        AR +
Sbjct: 308 PEEAPEVRSARSEG--GRIELHWVTGEAALAEL-------------------RQGEARVL 346

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  +  +                 +++ VL++ R   P +          + +  V    
Sbjct: 347 AARLRALHDAGRP----------WREMAVLIQSRGSLPALEAAFEA----WGVPFVTAQA 392

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
                 L ++DL    R        LS    L+ P    S   +  I         +   
Sbjct: 393 RGFYGLLEVRDLYHALRVGFDARAHLSLAAFLRGPFGGLSPRAVDAILAAEDPLAAL--- 449

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDV 528
                      +  V   + E+    +  +P +    ++     G + ++          
Sbjct: 450 ---------EAYPEVAARVAEIRTWVRQTAPFEALKRLVRTRFLGGKSYLEWLSPAARAN 500

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQY--PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +D  L   L   +N  + ++ L++ LE+           +   + VR++TVH AKGLE P
Sbjct: 501 VDALL---LEFSRNPPARIEALLARLEELRWADEAGEVPAGGEDAVRVVTVHAAKGLEWP 557

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VV + D   +         +                  +   +   ++  K  +    EE
Sbjct: 558 VVAVFDLSRKRAHPGAPVFVRPEDGRF-----------ATREDPDFTEYQKAWEAREAEE 606

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV  +RA++ LI+           + +      +   F+ +   + +        
Sbjct: 607 AYRLFYVAASRAAEHLILTGSV-------ALKPDQEGRLAARFYGESWARTLWALEVDAW 659

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
            E  A  W        P  + + ++       + + +       +  P  L     +   
Sbjct: 660 PEVRARRWELKEVPAAPRVQRKEVQPPAGVPALMRPVRPGRYPPVYSPSALKAERAEALE 719

Query: 767 -KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                    +       G++ H  +           ++F      +    +  +E + LL
Sbjct: 720 VDCVDPEASAGGDARAVGILTHYAIAQ--NWGPDDPEHFENLRAQEVMLAYAPEEQERLL 777

Query: 826 LSITRLLENPMMTTAMSCDS---YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
             +  LL        +  +      E      +  P    +  G ID++       ++ +
Sbjct: 778 AEVRELLR--AYRALLGRELPWPRDEDYPELPLALPHAGTVWEGVIDRLYRVGDRWYLED 835

Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
           YKT           P  +  QL++Y + +++++  +     L+++   +V  +    L +
Sbjct: 836 YKTDRTP------RPERYAFQLALYRRGVREAWGIEP-EVRLVFLRTREVVCLEPRLLEE 888

Query: 943 AFAE 946
           AF  
Sbjct: 889 AFQR 892


>gi|308232374|ref|ZP_07415860.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|308379444|ref|ZP_07486303.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|308380606|ref|ZP_07490521.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
 gi|308214071|gb|EFO73470.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|308356886|gb|EFP45737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|308360886|gb|EFP49737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
          Length = 1144

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/960 (13%), Positives = 257/960 (26%), Gaps = 175/960 (18%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  +         +    +   L +            L     E      V+DF   +
Sbjct: 238  ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 297

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 298  ASAARLAATSP---QVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 348

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R          + G    ++EL  S+R+    L V
Sbjct: 349  LALTAVGDPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPVLELLTSWRNPPQALRV 405

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + + +           S      R       G V+                        
Sbjct: 406  ANGISAEARRR------SVAVRALRPRPDAPPGAVRCALL-------------------- 439

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                 ++    +A  +                     ++     VLVR+  D   I    
Sbjct: 440  --PDVQAEREWIADHLRMRYQRAEADG----------VKPPTAAVLVRRNADAAAIADTL 487

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I         L     + +++A+ R +       + + +L  P +     D+
Sbjct: 488  RA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 543

Query: 454  FKICT-----------------------QRHETETVYEYIQK------FANCGISKFQHV 484
              +                            +   + + I        ++  G  +   +
Sbjct: 544  AALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGAL 603

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRN- 539
               +  L       S  D    +        +  +      G    + LD F +      
Sbjct: 604  AGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYA 662

Query: 540  ----EQNSYSSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                 ++S +S+  L++ L+              +   + V+++TVH AKGLE  VV + 
Sbjct: 663  ERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVA 722

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN--- 648
                 VF     +   +       P +      + +    V D      +    +     
Sbjct: 723  HLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEH 782

Query: 649  -------------RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------- 680
                         RLLYV +TRA D L++  H       K    +               
Sbjct: 783  RRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAA 842

Query: 681  ---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  +V          ++  L ++  +  W A   +    +              D  
Sbjct: 843  AGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLP 902

Query: 738  KIPKKLFSPIKN-------DINEPYILNPSTIDTKGKTNLE---------SLLSDNQTFN 781
                 +  P +        D++                 L           L+ D     
Sbjct: 903  GSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGAR 962

Query: 782  RGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--- 836
            +     +L+  +   P+      +   ++  +        +  +L  +  R + +P    
Sbjct: 963  Q-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELA 1017

Query: 837  -MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQ 891
             +  A +  S++     +V      P  D ++ GRID + +       + ++KT      
Sbjct: 1018 ALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRIDAVFVDPDGGATVVDWKTGKPPHG 1077

Query: 892  EIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                       QL++Y          P  S+     YV      +  +       A + T
Sbjct: 1078 PAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFYYVRSGITVVPDELPAPGELAMLLT 1135


>gi|330964285|gb|EGH64545.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 669

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 100/646 (15%), Positives = 210/646 (32%), Gaps = 125/646 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   K    +DF
Sbjct: 129 DDGVDEIKNMIGSWKNDLILPAEALENARNPKE-----QTAAIVYTHYQRTLKAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILVPVKLFQEHPD---VLEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             S      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 233 --SRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLISNNPHAFEK---------------------QLWSEMGHGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCRNEDAEAERVAMEILTLH---------LRTDRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y   ++        +    + Q   +++  +        P  
Sbjct: 415 STTLEKLGNYATERKVSMYAATEEMGLGEHLDSRYTDRLQRFKRWMDGVRQQCAQNDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              +E      +  +   +      L  ++    +++E I +L
Sbjct: 475 ALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKL 534

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++    +    V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L           
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFADKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +         + +   +D   +    T +  K        +    
Sbjct: 620 GEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 665


>gi|304398155|ref|ZP_07380030.1| DNA helicase II [Pantoea sp. aB]
 gi|304354441|gb|EFM18813.1| DNA helicase II [Pantoea sp. aB]
          Length = 720

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/580 (16%), Positives = 187/580 (32%), Gaps = 116/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   ++L+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNVLVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRMLAGD----------SGRVIIVGDDDQSIYGWRGAQVENIQRFLQDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 273 --GAETIRLEQNYRSTNNILKAANALIANNNGRLGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + +  S    F+ L +       AR +   I   +              
Sbjct: 310 -------TEGSDGEPISIYCAFNELDE-------ARFVVNRIKVWMENGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            +           +   IKD ++  R + ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEAL----LQSSMPYRIYGGMRFFERQEIKDALSYLRLMANR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++  ++       A    S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGVGDRTLDVVRQTARERQMTLWQATRELLQSRALAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L         H     ++        +    G +    I+ L+E +  T +   
Sbjct: 462 CELVDSLATETADLPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVTATRQFSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H+AKGLE   VF+V     +F 
Sbjct: 522 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGVTRAM 607

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +L +          K         + +         +++
Sbjct: 608 MKLTLTYAETRRLYGKEVYHRPSRFIGELPEACIEEVRLR 647


>gi|153833972|ref|ZP_01986639.1| exodeoxyribonuclease V, beta subunit [Vibrio harveyi HY01]
 gi|148869710|gb|EDL68691.1| exodeoxyribonuclease V, beta subunit [Vibrio harveyi HY01]
          Length = 1212

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 151/1021 (14%), Positives = 308/1021 (30%), Gaps = 167/1021 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMET-------GNPTIL-----KKAQTLQQASQT 59
            +     + LW  P   + DI+ Y++ +  +       G+   L     K+   L+ A   
Sbjct: 181  ALAGEVRQLWGSPSDLLYDISNYLTGAPLSLSVPAMEGSLADLHEQNLKQIDALK-AQWR 239

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQD------ 105
               ++  +L++   + ++   +K++ T                D  +KL+K         
Sbjct: 240  DNQDDFLALIADSDVNKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLFEK 299

Query: 106  ---------EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                        +  + F    +           ++      +AK +   L F+DL+   
Sbjct: 300  TPKGTAPQHPVFEAIEAFLANPISLKAPLLAHAIEHCRVMLAKAKNQKQWLSFDDLLTQ- 358

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
                   D +A +  +I       +IDE QDT  +Q+ +   +  D        +    L
Sbjct: 359  LSASIDTDETALLTERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLD--------NPECGL 410

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F +GD KQ+IY F GA+    ++ +       T          L  ++RS+AD++  V++
Sbjct: 411  FMIGDPKQAIYGFRGADIFTYIKARNQVSAHYT----------LGTNWRSSADMVLAVNQ 460

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS- 335
            +F++P++      DS                V            Q  P    W    +  
Sbjct: 461  IFALPDSP--FIYDSDIPFHSVDYSPSADKRVW-------TMGGQKQPALTYWLQEAEDK 511

Query: 336  -LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
             LP+    + +A   A  I  ++     G   + +  K++ ++A DI VLVR   +  ++
Sbjct: 512  PLPKGEYLTAMAEATASQIQTILTAAQQGQACLVNGEKQKPVKAGDIAVLVRTGSEGRMV 571

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                + L +    SV  ++R  +      +DL  L + +L+ E+D +    L S LF   
Sbjct: 572  K---QALADQGIASVYLSNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALD 628

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               +  +           E + + A     +++ +      L  +    S       +L 
Sbjct: 629  AASLDALNND--------ETVWENAVNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLE 680

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKR 563
                 Q          +  + E L        + +  L+ L   +              +
Sbjct: 681  EGANSQSENGERVLTDLMHIGELLQQASNELDSDHGLLRWLAQSISDAEHGLGGSDDQIQ 740

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               +  N V+I+T+H +KGLE  +VFL                      ++         
Sbjct: 741  RLESERNLVQIVTIHKSKGLEYDLVFLPFV-------------FGYREASEAKYYDAEND 787

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWY 682
            ++          +K   K    E  RL+YV +TRA     I           K      +
Sbjct: 788  RTVLDITGNDASLKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTKEPTGVHH 847

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE--------NTPLEREETIKQLM 734
              +     N +      L   + K +          P             E    I + +
Sbjct: 848  SAIGYLVQNGQEGGINDLFVGLKKQQENLDSVVICDPPKQHDDMFVAEQTELAALIAKEL 907

Query: 735  DEQKIPKKLFSPI---------KNDINEPYIL-------NPSTIDTKGKTNLESLLSDNQ 778
                      +             + +    +       +    + +      S+ +  +
Sbjct: 908  QNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEAELVEPERSIFNFPR 967

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPM- 836
                G  +H L + I        +           ++    +    L   I  +L  P+ 
Sbjct: 968  GARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDTVLATPLD 1027

Query: 837  -----MTTAMSCDSYSEVSVSGKINCPKKDII-------------------------ISG 866
                 +          E+     I       +                         + G
Sbjct: 1028 SKALLLNQKGPAQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQTVQGMLKG 1087

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPN 917
             ID +   Q   ++ ++K++H             +     + +  Q  IY   L     +
Sbjct: 1088 FIDLVFEHQGKYYVLDWKSNHLGDDVFHYHGDALKSAMADHRYDLQYQIYALALHRFLRS 1147

Query: 918  K 918
            +
Sbjct: 1148 R 1148


>gi|306782246|ref|ZP_07420583.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002]
 gi|306794956|ref|ZP_07433258.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|306799158|ref|ZP_07437460.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006]
 gi|308325002|gb|EFP13853.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002]
 gi|308336739|gb|EFP25590.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|308340579|gb|EFP29430.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006]
          Length = 1101

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/960 (13%), Positives = 257/960 (26%), Gaps = 175/960 (18%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  +         +    +   L +            L     E      V+DF   +
Sbjct: 195  ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 254

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 255  ASAARLAATSP---QVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 305

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R          + G    ++EL  S+R+    L V
Sbjct: 306  LALTAVGDPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPVLELLTSWRNPPQALRV 362

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + + +           S      R       G V+                        
Sbjct: 363  ANGISAEARRR------SVAVRALRPRPDAPPGAVRCALL-------------------- 396

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                 ++    +A  +                     ++     VLVR+  D   I    
Sbjct: 397  --PDVQAEREWIADHLRMRYQRAEADG----------VKPPTAAVLVRRNADAAAIADTL 444

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I         L     + +++A+ R +       + + +L  P +     D+
Sbjct: 445  RA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 500

Query: 454  FKICT-----------------------QRHETETVYEYIQK------FANCGISKFQHV 484
              +                            +   + + I        ++  G  +   +
Sbjct: 501  AALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGAL 560

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRN- 539
               +  L       S  D    +        +  +      G    + LD F +      
Sbjct: 561  AGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYA 619

Query: 540  ----EQNSYSSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                 ++S +S+  L++ L+              +   + V+++TVH AKGLE  VV + 
Sbjct: 620  ERASARSSEASVAGLLAYLDVAEVAENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVA 679

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN--- 648
                 VF     +   +       P +      + +    V D      +    +     
Sbjct: 680  HLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEH 739

Query: 649  -------------RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------- 680
                         RLLYV +TRA D L++  H       K    +               
Sbjct: 740  RRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAA 799

Query: 681  ---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  +V          ++  L ++  +  W A   +    +              D  
Sbjct: 800  AGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLP 859

Query: 738  KIPKKLFSPIKN-------DINEPYILNPSTIDTKGKTNLE---------SLLSDNQTFN 781
                 +  P +        D++                 L           L+ D     
Sbjct: 860  GSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGAR 919

Query: 782  RGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--- 836
            +     +L+  +   P+      +   ++  +        +  +L  +  R + +P    
Sbjct: 920  Q-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELA 974

Query: 837  -MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQ 891
             +  A +  S++     +V      P  D ++ GRID + +       + ++KT      
Sbjct: 975  ALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRIDAVFVDPDGGATVVDWKTGKPPHG 1034

Query: 892  EIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                       QL++Y          P  S+     YV      +  +       A + T
Sbjct: 1035 PAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFYYVRSGITVVPDELPAPGELAMLLT 1092


>gi|323142809|ref|ZP_08077522.1| putative ATP-dependent DNA helicase Rep [Succinatimonas hippei YIT
           12066]
 gi|322417454|gb|EFY08075.1| putative ATP-dependent DNA helicase Rep [Succinatimonas hippei YIT
           12066]
          Length = 671

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 111/639 (17%), Positives = 210/639 (32%), Gaps = 123/639 (19%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT---LAKYLNAHYEEAKKKNC 145
           I +K P + +  K  +D       + + +K        +T       L   Y+   K   
Sbjct: 121 IREKYPLMLDG-KAERDCIFDALQQISLWKGELRAPQDITPKTTLSSLYEEYQTYLKACN 179

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
             DF+DLI  T  LLK    +A    K +    ++L+DE QDT+  Q+E+++ L      
Sbjct: 180 AADFDDLIFLTTKLLKSDPETA---SKWENYFRYVLVDEYQDTNTTQYELLKVLV----- 231

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                S  R    VGD+ QSIYS+ GA P+ +                   +I+L  ++R
Sbjct: 232 -----SKRRRFTVVGDDDQSIYSWRGARPENINILAHDFP--------DLKVIKLEQNYR 278

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           S+  IL   +K+    E+    S  S      +                           
Sbjct: 279 SSGRILHCANKIIENNEHLFKKSLFSNLDEGKK--------------------------- 311

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                    ++ +    +  + R+A  I           +        +D  VL R    
Sbjct: 312 --------IAVIEVQDENAESERVASEI---------LKHRYLYRKPWRDYAVLYRSNTQ 354

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
           +  I    R      +I  V        D + +KD++A  R + ++ D+ + + ++  P 
Sbjct: 355 SRSIEKAFRS----ARIPCVITGGNSFFDMMEVKDILAWCRLLSNEGDNAALLRIINIPR 410

Query: 446 FNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFC 498
                + +  I +     +  +Y          K ++         ++  + L ++ +  
Sbjct: 411 RGIGAETLSTIASVASEYSVNLYTALRSKQLYAKLSSGQNKSITSFLELYNSLKNLLKAH 470

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRN---EQNSYSSLQEL 550
                   ++              N+      I  +   +++        +     L   
Sbjct: 471 QDLQLAQKLIDIIGYEGYLRGTGANDKSVEVKIKNVRTLMSWIEDLVKGRRGEPPLLFSQ 530

Query: 551 I-SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
              +L       K    + ++ V++MT+H+AKGLE P VFL+     +  H++   M   
Sbjct: 531 AVDKLGLREMMDKNEDGSENDAVQLMTLHSAKGLEFPYVFLIGMEEGILPHRNSLDMPNG 590

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                              EE  RL YVG+TRA  +L I     
Sbjct: 591 ----------------------------------IEEERRLAYVGVTRAKVELTITYCRE 616

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
               +++        + +    D   + +     I+K+E
Sbjct: 617 RKKGREATANEPSRFIAEMPQEDLAREFLGAPKKIDKEE 655


>gi|148238576|ref|YP_001223963.1| UvrD/REP helicase [Synechococcus sp. WH 7803]
 gi|147847115|emb|CAK22666.1| UvrD/REP helicase [Synechococcus sp. WH 7803]
          Length = 795

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 101/625 (16%), Positives = 201/625 (32%), Gaps = 99/625 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y +A   N      D        ++    +  +R    +   H+L+DE QD
Sbjct: 202 KLTADVYRRYRKALAANNA---LDFDDLLLLPVQLLQQNEQVRSYWHRRFAHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGK-NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  D    +   + + R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYELIKLLVTDGKDPQVYNNWAGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           + ++   + ++++L  ++RSTA IL   + + +            T              
Sbjct: 319 QQSDEATR-TMVKLEENYRSTATILEAANALIANNSERIDKVLRPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  S T   D + +       A  + + +  M          
Sbjct: 365 ---------------GEGELISLTRCDDEIAE-------AEAVVHRLRMM--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+  L R    +  +          ++I  V        D   IKD++   R
Sbjct: 395 ANPELTWGDMACLYRTNAQSRALEESL----VRWRIPYVVVGGLRFYDRREIKDVLGYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  I ++    ++    ++      E ++        
Sbjct: 451 LLINPADTVSLLRVINVPKRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAK 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + I+ L       +P D    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCELINGLREQLHNTTPSDLIQQVMERSGYVSELITEGTDEAEERRRNLQELVNAG 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N    L+  ++          +      + V +MT+H++KGLE PVV LV    
Sbjct: 571 LQYQEENDEGDLEGFLASAALASDADSKD--TAADRVTLMTLHSSKGLEFPVVCLVGLEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +            +I  +           +  
Sbjct: 655 TRAKERLFLSHASERRLWGGMREPAVPSVFLSELPEALVQGEIPRSGGAAIRREQRLDRL 714

Query: 716 THHPENTPLEREETIKQLMDEQKIP 740
           T    + P        +       P
Sbjct: 715 TRVDRDQPSSAPANAVRRRQAGPAP 739


>gi|219685122|ref|ZP_03539942.1| ATP-dependent DNA helicase PcrA [Borrelia garinii Far04]
 gi|219673218|gb|EED30237.1| ATP-dependent DNA helicase PcrA [Borrelia garinii Far04]
          Length = 658

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/578 (17%), Positives = 188/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSL+Q
Sbjct: 165 IFKLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRSKYSKRYRYVLIDEFQDTSLLQ 221

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 222 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGASYNNMLQFEKDYS------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 264 --AKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                D + +          +A  I  +          +    +
Sbjct: 307 -------------VIDVFVLEDEIQES-------EFVASQIIEL---------SRIDGFK 337

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           +K I VL+R       +  + +       I    +          IKD+++    I++ +
Sbjct: 338 SKKIGVLMRTNALFRNVEMIFK----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 393

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +                     
Sbjct: 394 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDIVFSFTNTSTYDKALNKQV 453

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  D    ++ + +     ++               +
Sbjct: 454 IESIEDFVSFIEEYRYKFSITKNTYSDIIKEMIESIEYWGFLVNENPNSIKVAEYKYQNI 513

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L             + N  + + TVH+AKGLE   V
Sbjct: 514 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEESENININLKTVHSAKGLEFDYV 573

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H  I +   +    +                                  
Sbjct: 574 FFIAVEDNIIPHHRIIEESEIGLEEE---------------------------------R 600

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D LII   +    +++   +     + 
Sbjct: 601 RVFYVALTRAKDSLIITMANKRKKDRQIFDQLPSRFIS 638


>gi|329297035|ref|ZP_08254371.1| DNA-dependent helicase II [Plautia stali symbiont]
          Length = 720

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 101/580 (17%), Positives = 190/580 (32%), Gaps = 116/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +  ++IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKP---QILNHYRERFSNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  D             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRMLAGD----------SGRVIIVGDDDQSIYGWRGAQVENIQRFLQDF------- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST +IL   + + +      G                      +LW
Sbjct: 272 -LGAETIRLEQNYRSTNNILKAANALIANNNGRLGK---------------------ELW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      + ++ S    F+ L +       AR     I                  
Sbjct: 310 -------TDGSDGEKISLYCAFNELDE-------ARFAVNRIKTWHENGNAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D  +L R    + ++            I           +   IKD +A  R + ++
Sbjct: 348 --QDCAILYRSNAQSRVLEEAL----LQGSIPYRIYGGMRFFERQEIKDALAYLRLLANR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHV 484
            DD +F  ++ +P+    +  +  +    R +  T+++  +        A    S  Q  
Sbjct: 402 NDDAAFERVVNTPVRGVGDRTLDVVRQTAREQQLTLWQATRALLQSKALAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
            + +  L         H     ++        +    G +    I+ L+E +  T +   
Sbjct: 462 CELVDALATETAELPLHVQTDRVIKDSGLWLMYEQEKGEKGQARIENLEELVTATRQFSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L        +       + V++MT+H+AKGLE   VF+V     +F 
Sbjct: 522 QDEDEDLMPLQAFLSHAALEAGEGQADKWQDAVQLMTLHSAKGLEFSQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGVTRAM 607

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           ++L +          K         + +         +++
Sbjct: 608 EKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLR 647


>gi|238759818|ref|ZP_04620975.1| ATP-dependent DNA helicase rep [Yersinia aldovae ATCC 35236]
 gi|238701961|gb|EEP94521.1| ATP-dependent DNA helicase rep [Yersinia aldovae ATCC 35236]
          Length = 673

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 104/662 (15%), Positives = 213/662 (32%), Gaps = 121/662 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ + +  +    + D  +     +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLISQISNWKNDLLDPASAAAQVRSERD--KLFAHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+K      +R +    + ++L+DE QDT+  Q+ +++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQKN---LEVRERWQNRLRYLLVDEYQDTNTSQYHMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     S      VGD+ QSIYS+ GA P+ ++       +          +I+L 
Sbjct: 233 ----------SRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ--------LQVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S                              
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKKLFSALE--------------------------- 307

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                         +   ++    A R+            + ++   +  Q  D  +L R
Sbjct: 308 --------YGDELKVITANNEDHEAERVV---------GELIAHHFVKKTQYGDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +QEDD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQEDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        I K+        ++++               G+   Q    ++  +I +
Sbjct: 407 NTPKREIGSATIQKLGEWANVRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWMDGIIRL 466

Query: 495 AQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E N   +
Sbjct: 467 VEREPVAAVRDLIHGIDYESWLFETSPSPKAAEMRMKNVNLLFSWMTEMLEGSELNEPMT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LIQVVTRFTLRDMMDRGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D   +  +   S  +          +        +
Sbjct: 612 CKERRQYGELIRPEPSRFLMELPQDDLNWENERKAVSPEERMQKGQSHLANIRAQLANAK 671

Query: 727 EE 728
           ++
Sbjct: 672 KQ 673


>gi|88801112|ref|ZP_01116658.1| ATP-dependent DNA helicase Rep [Reinekea sp. MED297]
 gi|88776141|gb|EAR07370.1| ATP-dependent DNA helicase Rep [Reinekea sp. MED297]
          Length = 701

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/651 (15%), Positives = 209/651 (32%), Gaps = 125/651 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK--STLASLTLAKYLNAHYEE 139
           K +I   I + +P+  +++   ++     ++        +     A+  LA  + A Y  
Sbjct: 143 KALIKDIILRSAPNAVDEVDYFRNLISLWKNDLKEPDDLRGKMEDATHALAVEIYAEYNR 202

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
                  +DF+DLI     +    +    I  K  + I ++L+DE QDT++ Q+ +++ L
Sbjct: 203 MLSAYNAVDFDDLIRLPTLMFLNHNE---ILSKWQRRIRYLLVDEYQDTNISQYLLVKLL 259

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             D                VGD+ QSIYS+ GA P+ +++ +               +++
Sbjct: 260 VGDD----------PRFTVVGDDDQSIYSWRGARPENLVKLQEDFPH--------LKLVK 301

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RST  IL   + V     +    +  S                           +
Sbjct: 302 LEQNYRSTGLILKAANTVIDNNPHVFKKTLWS---------------------------E 334

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                +     +  D           A RIA  I               R    KD  +L
Sbjct: 335 MDFGDKIRIIRTPSD--------DAEAERIANEI---------LHQHLVRKCDYKDFAIL 377

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R      ++    +      +I    N          IKD+M+  R +++ +DD +F+ 
Sbjct: 378 YRGNHQARIMEMKLQ----QNRIPYKMNGGTSFFAKAEIKDVMSYLRLLINPDDDAAFLR 433

Query: 440 MLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELI 492
           ++ +P        + K+         ++     +             + +    ++   I
Sbjct: 434 IINTPRREIGPATLEKLNDYAAVRGISLVSSCSELGLRQHLTPKASERLERFTGWLDRTI 493

Query: 493 HIAQFC-SPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRN------E 540
                  +P      ++                    + +  +   ++           E
Sbjct: 494 EKLHTLDNPVMAIREMITDINYEAWLRQDSTSDKMAEKRLANVHILIDGLQSMMERGNDE 553

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            ++  ++ + I +L       ++      + V++MT+H +KGLE P VF++    ++  H
Sbjct: 554 DDTDLAIGDAIGKLVLRDMMERQEEENEEDAVQMMTLHASKGLEFPHVFIMGLEEELLPH 613

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                 ++    EE  RL+YVG+TRA  
Sbjct: 614 -----------------------------------RNSIESGDIEEERRLMYVGITRAQK 638

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            L +   S      +    T    + +   +D R    +     +  E  A
Sbjct: 639 TLALTFASRRKQFGELIDCTPSRFLDELPEDDIRWIGAEEKAKPDNREENA 689


>gi|262193706|ref|YP_003264915.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
 gi|262077053|gb|ACY13022.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
          Length = 688

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 111/595 (18%), Positives = 212/595 (35%), Gaps = 111/595 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+EA +    +DF+DL+  T  +  +RD    +R +  ++   +++DE QD
Sbjct: 168 EITAEVYPRYQEALRAYAAVDFDDLLTATVRMFDQRDD---VRARWQEKFRFVMVDEYQD 224

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q + +++L  +             L  VGD+ QSIYS+ GA+P  +L   R+    
Sbjct: 225 TNRAQLKFVKTLVAE----------HENLCVVGDDDQSIYSWRGADPTNILHFDRMFP-- 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST  IL   + V +   N  G +                   
Sbjct: 273 ------GARVIKLEQNYRSTPTILRAANAVIANNVNRHGKN------------------- 307

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW  +        +  +    S  D+  +       AR +A  I +++GTD       
Sbjct: 308 --LWSDIA-------DGAKIVHASATDTESE-------ARFVAREIGDIVGTD------- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              ++ +D+ VL R    + LI    R       I  V        +   +KDL+A  R 
Sbjct: 345 --NLRYRDVAVLYRSNIQSRLIEESLRS----ASIPYVMYGGQQFYERKEVKDLIAYLRL 398

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----------ETETVYEYIQKFANCG 477
            L+Q D+++   ++  P        + ++               E  +      K     
Sbjct: 399 ALNQRDEIALRRVINYPARGIGATTLKRVEDHARASRTSMWRILEGASQMAESDKMRPST 458

Query: 478 ISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDE 531
           +   ++ +  I      +       D    ++   +           +      ID ++ 
Sbjct: 459 VQAIENFVAIIERTRASLDGGARIIDVTRRLIDEIQLYDDLRNASPSAAAAQRRIDNVES 518

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFL 590
            L    R+++     L  L   L +    ++     +  N+V + T+H AKGLE P+VF+
Sbjct: 519 LLRSLERHQEKR-PGLGALAEYLRRLSLAVESEAGEDPGNKVVLTTLHGAKGLEFPIVFM 577

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +    ++  H    K                           +D++     +   E  RL
Sbjct: 578 IGLEEEILPHARTLK------------------------PQATDVMDLDHVTDVSEERRL 613

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            YVG+TRA  +L + +     +  K+  RT    + +        + I+      
Sbjct: 614 AYVGITRAQRKLYLTRTQVRVSRGKNLPRTPSRFLQEIPAELLEERDIQAEERAP 668


>gi|300721421|ref|YP_003710692.1| Rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297627909|emb|CBJ88455.1| Rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 676

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 108/706 (15%), Positives = 223/706 (31%), Gaps = 138/706 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I+ + +L +E         A  ++        +++ +
Sbjct: 59  AAREMKERV-AQTLGRKETKGLMISTFHTLGLEIIKREYQ--ALGMKSNFSLFDDQDQMA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL                T ++ ++  DL +KL  S   +               +    
Sbjct: 116 LLKDL-------------TADLLEEDKDLLQKLISSISNWKNDLMSPEQVVRSARSAQEH 162

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A+     Y+       +LDF+DLI     LL + +    +R +    I ++L+DE QD
Sbjct: 163 QFAE-CYRRYDLHLNSCNILDFDDLITKPTLLLMRDE---NVRERWQNRIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L  +                VGD+ QSIYS+ GA P+ ++  K    + 
Sbjct: 219 TNTSQYQLVKLLVGN----------RARFTVVGDDDQSIYSWRGARPQNLILLKEDFPQ- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I+L  ++RS+  IL   + + +   +       S           G    
Sbjct: 268 -------LNVIKLEQNYRSSGRILKAANILIANNPHVFEKKLFSE-------LHYGDPLR 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V                             + ++    A R+   I  +I    I     
Sbjct: 314 V----------------------------LEANNEDHEAERV---IGELIAHHFI----- 337

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + KD  +L R    + +   +        +I    +          IKDL++  R 
Sbjct: 338 -NKTEYKDYAILYRGNHQSRIFEKML----MQNRIPYRISGGTSFFSRPEIKDLLSYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SK 480
           + + EDD +F+ ++ +P        I K+        +++Y+                + 
Sbjct: 393 LTNPEDDSAFLRIVNTPRREIGAVTIQKLGEWANQRNKSLYQASFDLGLEQHLTGRGLAA 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNF 535
                 ++ E+    +          +L                +     +  +++   +
Sbjct: 453 LHRFTHWMEEISRQVEREPLLA-VRDLLRGMDYESWLYETSPSPKAAEMRMKNVNQLFTW 511

Query: 536 TLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                   + N   +L ++++         +       ++V++MT+H +KGLE P VFLV
Sbjct: 512 MSEMLEGDDLNEPMTLSQVVARFTLRDMLERGEEDDALDQVQLMTLHASKGLEFPYVFLV 571

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  H+                                       +   EE  RL 
Sbjct: 572 GMEEGLLPHQSSID-----------------------------------EENIEEERRLA 596

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           YVG+TRA   L            +  +      + +   +D    +
Sbjct: 597 YVGITRAQRVLFFTLSKERRQYGELIRPEPSRFLLELPQDDLDWPR 642


>gi|197336384|ref|YP_002157309.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
 gi|197317874|gb|ACH67321.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
          Length = 671

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 110/655 (16%), Positives = 219/655 (33%), Gaps = 125/655 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++I+     L++ L    +    +          +S      L  +   
Sbjct: 112 DQLALLKELTEKQIDGDKDLLRQLLSSISNWKNDMLTPAQVKGFARSEQD--QLFAFCYE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y    K    LDF+DLI     LL+       +R +   +I ++L+DE QDT+  Q+E+
Sbjct: 170 MYLNQMKAYNALDFDDLISLPVLLLRTN---QEVRERWQMKIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 227 VKLLVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLNEDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +A      S                        
Sbjct: 269 RVIKLEQNYRSTSRILRAANILIANNPHAFEKRLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + +Q    +  D           A R+            + ++        KD
Sbjct: 308 -------DGEQIKILTAKD-------DEHEAERVV---------GELIAHRFLNRTDYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             VL R    + LI           ++    +          IKD+MA  R + + +DD 
Sbjct: 345 YAVLYRGNHQSRLIEKSL----VQNRVPYKISGGTSFFARAEIKDIMAYLRLLTNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +           +   +    +I
Sbjct: 401 AFLRVVNTPRREIGPVTLEKLGSYANMRGKSLFESSFEIGLEQTLSGRGLESLRRFCHWI 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTL-----R 538
             +   A+  +  +    ++               ++     +  + +  ++ +      
Sbjct: 461 VSISENAERGNTVEAVRSLVKDIHYEDWLYETSTSAKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           N  N   +L+E++ +L       +       ++V++MT+H +KGLE P V+L+     + 
Sbjct: 521 NYDNEEKTLKEVVQKLTLRDMMERGEDEDGADQVQLMTLHASKGLEFPYVYLIGAEEGIL 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL YVG+TRA
Sbjct: 581 PHQTSID-----------------------------------EDNVEEERRLAYVGITRA 605

Query: 659 SDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
             +L   +CK      E    + + +         D  +KK K T     +   A
Sbjct: 606 QKELTFTLCKERRQYGELIRPEPSRFLEELPHDDLDWEMKKPKPTQEERMERGKA 660


>gi|319788397|ref|YP_004147872.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1]
 gi|317466909|gb|ADV28641.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1]
          Length = 726

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 102/577 (17%), Positives = 196/577 (33%), Gaps = 121/577 (20%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +      +           +     Y+E   +  ++DF +L++  ++LL+       +  
Sbjct: 152 EGRRPQHIQAVNDPWTESMRRAYELYQERCDRAGLVDFAELLLRAHELLRDNPA---LLQ 208

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                   +LIDE QDT+ IQ+  +R L  D             +F VGD+ Q+IY + G
Sbjct: 209 HYRTRFRELLIDEFQDTNAIQYAFVRVLAGD----------TGRVFVVGDDDQAIYGWRG 258

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + V +  R               I L  ++RSTA+IL   + V +   +  G     
Sbjct: 259 AKVENVQQFLRDFP--------GAQTIRLEQNYRSTANILGAANAVIAHNPDRIGK---- 306

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            QLW             +     + ++ + +       AR +  
Sbjct: 307 -----------------QLW-------TDSGEGEPVDVYAAYNEMDE-------ARFVVE 335

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I   +                ++  VL R    +  +  +        ++         
Sbjct: 336 RIRQWVRDGG----------SWREAAVLYRSNAQSRALEEVL----LSEQVPYRVYGGMR 381

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYI 470
             +   IKD +A  R + ++ DD +F   + +P     +  + ++    R  ++++++  
Sbjct: 382 FFERAEIKDTLAYLRLVANRADDAAFERTVNTPARGIGDRTLDEVRRRARERSQSLWDAA 441

Query: 471 QKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
                    A    +     +  +  L       +  D    +L     RQ + S    +
Sbjct: 442 TALVAENALAARARNAVAGFLGLVEALDAETADLALKDRVDHVLARSGLRQHWTSEARGQ 501

Query: 525 -----VIDVLDEFLNFTLRNEQNSYS----SLQELISELEQYPPTI-KRAHSANHNEVRI 574
                 ++ LDE ++   R  +        S+ EL++ L        +    A+ + V++
Sbjct: 502 LDAESRLENLDELVSVASRFSRAELDDDQESMSELVAFLSYAALEAGEGQAQADEDGVQL 561

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H+AKGLE P+VFLV     VF                                    
Sbjct: 562 MTLHSAKGLEFPLVFLVGVEEGVFPSS--------------------------------- 588

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                ++   EE  RL YVG+TRA  +L++    +  
Sbjct: 589 -KSTEEQGRLEEERRLAYVGITRARQKLVMTYAESRR 624


>gi|308371270|ref|ZP_07424390.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|308372459|ref|ZP_07428757.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|308376024|ref|ZP_07445856.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007]
 gi|308378226|ref|ZP_07481952.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
 gi|308329221|gb|EFP18072.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|308333053|gb|EFP21904.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|308344515|gb|EFP33366.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007]
 gi|308353144|gb|EFP41995.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
          Length = 1144

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/960 (13%), Positives = 257/960 (26%), Gaps = 175/960 (18%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  +         +    +   L +            L     E      V+DF   +
Sbjct: 238  ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 297

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 298  ASAARLAATSP---QVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 348

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R          + G    ++EL  S+R+    L V
Sbjct: 349  LALTAVGDPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPVLELLTSWRNPPQALRV 405

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + + +           S      R       G V+                        
Sbjct: 406  ANGISAEARRR------SVAVRALRPRPDAPPGAVRCALL-------------------- 439

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                 ++    +A  +                     ++     VLVR+  D   I    
Sbjct: 440  --PDVQAEREWIADHLRMRYQRAEADG----------VKPPTAAVLVRRNADAAAIADTL 487

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I         L     + +++A+ R +       + + +L  P +     D+
Sbjct: 488  RA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 543

Query: 454  FKICT-----------------------QRHETETVYEYIQK------FANCGISKFQHV 484
              +                            +   + + I        ++  G  +   +
Sbjct: 544  AALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGAL 603

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRN- 539
               +  L       S  D    +        +  +      G    + LD F +      
Sbjct: 604  AGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYA 662

Query: 540  ----EQNSYSSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                 ++S +S+  L++ L+              +   + V+++TVH AKGLE  VV + 
Sbjct: 663  ERASARSSEASVAGLLAYLDVAEVAENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVA 722

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN--- 648
                 VF     +   +       P +      + +    V D      +    +     
Sbjct: 723  HLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEH 782

Query: 649  -------------RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------- 680
                         RLLYV +TRA D L++  H       K    +               
Sbjct: 783  RRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAA 842

Query: 681  ---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  +V          ++  L ++  +  W A   +    +              D  
Sbjct: 843  AGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLP 902

Query: 738  KIPKKLFSPIKN-------DINEPYILNPSTIDTKGKTNLE---------SLLSDNQTFN 781
                 +  P +        D++                 L           L+ D     
Sbjct: 903  GSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGAR 962

Query: 782  RGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--- 836
            +     +L+  +   P+      +   ++  +        +  +L  +  R + +P    
Sbjct: 963  Q-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELA 1017

Query: 837  -MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQ 891
             +  A +  S++     +V      P  D ++ GRID + +       + ++KT      
Sbjct: 1018 ALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRIDAVFVDPDGGATVVDWKTGKPPHG 1077

Query: 892  EIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                       QL++Y          P  S+     YV      +  +       A + T
Sbjct: 1078 PAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFYYVRSGITVVPDELPAPGELAMLLT 1135


>gi|255311430|ref|ZP_05354000.1| DNA helicase [Chlamydia trachomatis 6276]
 gi|255317731|ref|ZP_05358977.1| DNA helicase [Chlamydia trachomatis 6276s]
          Length = 634

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 174/547 (31%), Gaps = 118/547 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + + A Y+E  +    LDF+DL+  T  LL+  +    ++ +       +LIDE QDT+
Sbjct: 164 TRTVYAEYQEQLRAANALDFDDLLFLTEKLLRTPE----VQQEYANHWKALLIDEYQDTN 219

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L            +   +F VGD  QSIYS+ GA    +L  ++   +   
Sbjct: 220 HAQYLIAKRLAA----------AHNNIFVVGDPDQSIYSWRGANISNILNFEQDYSQAL- 268

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RS   IL   + +          +  S                  
Sbjct: 269 -------VVRLEENYRSCGTILEAANALIQNNSARLEKTLRSVK---------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          +   +T   D           A ++   ISN+            +
Sbjct: 306 -----------GPGDKIFCFTGKNDRDE--------AEQVLEEISNLHS---------YK 337

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I   DI +L R    +                               I+D++A  R   
Sbjct: 338 DIPLSDICILYRTNFQSQSFEAAL----LKRGYPYEIIGGISFYKRREIQDILAFLRLFS 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH----- 483
           +  D  +F   +           +  +    +     + +           +        
Sbjct: 394 NNYDMAAFERTISLKKCGIGATTLAALMNYAKTTALPILQACWDVLEKKSIRLTKKQQQG 453

Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLR 538
               + + H++  +   C  H+F    +                 +  + L++ L  T  
Sbjct: 454 LFSYLTHFHQMEQLYGNCDLHEFINETIRITDYLSILKEDPETYEDRKNNLEQLLAETQT 513

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++S  +L   + +L           +++H+ +++MT+H +KGLE PVVFLV     + 
Sbjct: 514 WGKSS-ENLPGFLEDLALKSSAD--ETASSHDRLKLMTIHNSKGLEFPVVFLVGLEENLL 570

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H + K MH                                     EE  RL YVG+TRA
Sbjct: 571 PHANSKGMH----------------------------------ENIEEERRLCYVGITRA 596

Query: 659 SDQLIIC 665
            + L + 
Sbjct: 597 QEYLYLS 603


>gi|253996605|ref|YP_003048669.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
 gi|253983284|gb|ACT48142.1| UvrD/REP helicase [Methylotenera mobilis JLW8]
          Length = 672

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 99/607 (16%), Positives = 193/607 (31%), Gaps = 124/607 (20%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            ++       A  +   Y++  K    +DF+DLI    +L ++ + +     K  +++ +
Sbjct: 153 AQADEELTHAAAKVYQIYQQTLKAYQAVDFDDLIKLPVELFEQHEDA---LNKWQRKLQY 209

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +LIDE QDT+  Q+++++ LT                 AVGD+ Q+IY + GA+ + + +
Sbjct: 210 LLIDEYQDTNACQYKLVKMLTGL----------RGQFTAVGDDDQAIYGWRGADVENLRQ 259

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                 K          +I+L  ++RST  IL   ++V S                    
Sbjct: 260 LTTDFSK--------LKVIKLEQNYRSTVRILRAANQVISNNPKLFEKK----------- 300

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW ++ +                   +    S    A  +   +      
Sbjct: 301 ----------LWSELGTGD--------------LIQVTAAMSEEHEAESVVMKLQA---- 332

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                +  +     KD  +L R      ++    R    ++KI    +      D   IK
Sbjct: 333 -----HRFEHRTFYKDYAILYRGNHQARILEQHLR----NHKIPYTVSGGQSFFDKAEIK 383

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQK 472
           DL++  R I +++DD +F+    +P        + ++         +++          +
Sbjct: 384 DLISYLRLIANEDDDPAFIRAATTPKKGIGNTTLERLGEYASLHKISLFAAAFEGGFQSE 443

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDV 528
             N  +    +  +YI++L   A     ++    +L A             R        
Sbjct: 444 IGNKQLEDLLNFCQYINKLQDRAVRDPANEVLNDLLTAINYEAFLYDTEEPRGAEVKWAN 503

Query: 529 LDEFLNFTL-------RNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
           + +F  +                  +L EL   +        R +    + V++ T+H +
Sbjct: 504 VLDFTGWLSKKGEPSTEYGNEKEGKNLLELTQMVSLMSMLEGRENGE-PDAVKLSTLHAS 562

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE   VFL+     +  H                                    + + 
Sbjct: 563 KGLEFGHVFLIGAEEGILPH-----------------------------------RESID 587

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
               EE  RL+YVG+TRA   L I          +         + +   +D R      
Sbjct: 588 NDKIEEERRLMYVGITRAQKSLNISWCKKRKRAGEMEMCEPSRFIAEIPKDDVRHFGNPF 647

Query: 701 TNSINKD 707
                  
Sbjct: 648 NKDPEAS 654


>gi|305431861|ref|ZP_07401028.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli
           JV20]
 gi|304444945|gb|EFM37591.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli
           JV20]
          Length = 686

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/602 (16%), Positives = 203/602 (33%), Gaps = 125/602 (20%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
                 K        + +     K  +    +L        +Y+E   K+  +DF+DL++
Sbjct: 135 QFISHFKNESKSVQDVFNDLELLKDNEIKHQALQKIAIYYQNYQEYLLKHNFVDFDDLLL 194

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            TN LL+          +      +I +DE QDT+ +Q++++++L               
Sbjct: 195 LTNILLEND---QNFAKEQSSFYRYITVDEYQDTNALQYKILKNLC----------CVHE 241

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIYS+ GA+ + +L  +               +++L  ++RS   IL   
Sbjct: 242 NICVVGDDDQSIYSWRGAKIENILNFQSEFSN--------VKLVKLEQNYRSVGMILKAA 293

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + + S  +   G +                         + ++ + +             
Sbjct: 294 NNLISHNKKRLGKT------------------------LLCTKDEGEDI----------- 318

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +    +  I +  +A  I  ++ +           I A +I VL R    +  I     
Sbjct: 319 QILSSDNEKIESALVAKKIKELLNSG----------IYAGEIAVLFRINALSRSIEEAFM 368

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
             K    I           + L IKDL+   R +++  DDLSF  ++  P  +  E  + 
Sbjct: 369 KEK----IPYKLLSGMRFYERLEIKDLICYFRILINPNDDLSFKRIINRPKRSIGEKALQ 424

Query: 455 KI-CTQRHETETVYEYIQKFA--------NCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
            +    +    +++E + +              ++ +  I+ I++L   +      + F 
Sbjct: 425 NLEDYAQKRKISLFEALCESDGSVGIFSLKKAQNEAKKFIQNIYKLREYSDLKKMIEKFE 484

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRA 564
            +   K+     +   G+E +  +DEF        +     +L++++SE+          
Sbjct: 485 ELFALKEFYA--LQEDGDERVLNIDEFYASIKEKIKEEPQTTLEDILSEISLLSDQDGIE 542

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  V +M+VH +KGLE   VF+V    + F                          
Sbjct: 543 ----GECVYLMSVHASKGLEFDHVFIVGLEERFFPLN----------------------- 575

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                           +S  EE  RL YV +TRA   L +    +        +      
Sbjct: 576 ----------------ESDIEEERRLAYVAITRAKKCLSLSIAKSRFYRGSRTELDSSRF 619

Query: 685 VY 686
           + 
Sbjct: 620 LE 621


>gi|87309221|ref|ZP_01091358.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
 gi|87288212|gb|EAQ80109.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
          Length = 759

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 105/658 (15%), Positives = 209/658 (31%), Gaps = 120/658 (18%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                 +      A+ ++ + +   Y+ A ++   +DF+DL+++   LLK+ +    +R 
Sbjct: 148 HLIEADRYVGGVNATGSIVERVYPKYQAALQQANAVDFDDLLMHVTLLLKENEE---LRA 204

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            +D+   +IL+DE QDT+L Q+ ++R+++  +            L   GD  QSIY + G
Sbjct: 205 SLDERFRYILVDEYQDTNLPQYAIVRAMSIQY----------PNLGVTGDPDQSIYGWRG 254

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  K +L  +               ++ L  ++RST +IL+V D + +  +  +  S  +
Sbjct: 255 ANLKNILEFESDFPA--------VKVVRLEQNYRSTPNILSVADALIANNKQRKKKSLFT 306

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                     I      +                                    A+ IA 
Sbjct: 307 DNPAGKAVRMIQYSTHKE-----------------------------------EAQAIAA 331

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            IS  +              + +D  +  R    +       R       +  +      
Sbjct: 332 RISAQVAQGKR---------RPRDYAIFYRINALSRTFEDAMR----QQGVPYMIVSGVE 378

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI 470
                 IKDL+A    + +  DD++F  ++  P     +  + K+      E  ++ E  
Sbjct: 379 FYHRKEIKDLLAYALLMNNPRDDVAFERIVNVPKRAIGKATLLKVRLHAATEGLSMLEAA 438

Query: 471 QKFANCGIS------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
           ++                  +     L          +    +L   + ++Q+ +    E
Sbjct: 439 REAGMIDGLGNRAAVALAKFVALFDRLSTKI-NDPVEEILGFVLSESEFKRQYEATDDVE 497

Query: 525 ---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTA 580
               ++ ++E L+     +         L   LE+     +     A  + V +MT+H A
Sbjct: 498 DQTRLENIEELLSSAREYDTEHPHD-GTLEHYLEEKTLVNETDDFDAEMDRVTLMTLHAA 556

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE PVV +V     +  H+  +                                    
Sbjct: 557 KGLEFPVVHIVALEQGLLPHERSR----------------------------------EN 582

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS----NQRTWYDMVYDSFHNDERVK 696
               EE  RLL+VG+TRA ++L +          K           ++  D     E   
Sbjct: 583 PEQLEEERRLLFVGITRAEEELDLSMARYRDFRGKRNMTIPSPFLMELPRDEMEVTEEQT 642

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                  +++  +  +  S     + P     +    +                  EP
Sbjct: 643 AFAPDFPLDESFFPEFPISGQRSLDLPRPALPSAVTNIRTAADLLGEREGDAQPRVEP 700


>gi|219684438|ref|ZP_03539382.1| ATP-dependent DNA helicase PcrA [Borrelia garinii PBr]
 gi|219672427|gb|EED29480.1| ATP-dependent DNA helicase PcrA [Borrelia garinii PBr]
          Length = 658

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 99/578 (17%), Positives = 190/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSL+Q
Sbjct: 165 IFKLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRSKYSKRYRYVLIDEFQDTSLLQ 221

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 222 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGASYNNMLQFEKDYS------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 264 --AKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +          +    +
Sbjct: 307 -------------VIDVFVFEDEIQES-------EFVASQIIEL---------SRIDGFK 337

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           +K I VL+R       +  + +       I    +          IKD+++    I++ +
Sbjct: 338 SKKIGVLMRTNALFRNVEMIFK----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 393

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +                     
Sbjct: 394 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDIVFSFTNTSTYDKALNKQV 453

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     ++               +
Sbjct: 454 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVNENPNSIKVAEYKYQNI 513

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L             + N  + +MTVH+AKGLE   V
Sbjct: 514 EGFLSIIKNWESKQFGELRDLSSFLNYIVLQSNEVSEESENININLMTVHSAKGLEFDYV 573

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H  I +   +    +                                  
Sbjct: 574 FFIAVEDNIIPHHRIIEESEIGLEEE---------------------------------R 600

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D LII   +    +++   +     + 
Sbjct: 601 RVFYVALTRAKDSLIITMANKRKKDRQIFDQLPSRFIS 638


>gi|304408643|ref|ZP_07390264.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS183]
 gi|307305472|ref|ZP_07585220.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica BA175]
 gi|304352464|gb|EFM16861.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS183]
 gi|306911775|gb|EFN42200.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica BA175]
          Length = 1273

 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 144/1031 (13%), Positives = 309/1031 (29%), Gaps = 173/1031 (16%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYF-QVSDINKYVSLSMETGNPTI-----LKKAQTLQQA 56
            +   LSL +S E   K  WP      ++ ++         G  T            L   
Sbjct: 225  DALALSLRQSLERF-KLAWPRGRDGLLALLHSLPLNGTRFGKATDKYPKLAAMFDALDNW 283

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                        L +  L++    +  +I         D  E+L                
Sbjct: 284  LAFGHGLPPLKELEALSLSELKLNKGGVIPSVSEAPLMDHMEQLATLIAAIKPAF----- 338

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                       +    ++  + + K++  VL  +DL+      L     +  +   +   
Sbjct: 339  ---------LYSAKLGISERFAQQKQQKNVLTPDDLLTTLASAL--HANNETLPKAVATR 387

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFV----GKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                LIDE QDT  +Q+ +   + +  +     G +   +  +L  +GD KQ+IY+F GA
Sbjct: 388  FPVALIDEFQDTDPLQFAIFSGIYQGRYSFEKQGADATENKLSLLMIGDPKQAIYAFRGA 447

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +    +  +   Q              L  ++RS+A+++  V+ +FS   +         
Sbjct: 448  DIHTYIEARHHTQAHY----------HLDTNYRSSANMVAGVNHLFSQHHDPFISQSIPF 497

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             +++  SS  G+              +      +    S  + L + ++  +LA   A  
Sbjct: 498  DSVKTPSSAKGK-------TLTEKTANPAALRLRLLSESAENGLNKTTARHLLAEDAAAE 550

Query: 353  ISNMIGTDTIFSNGKKR-VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I+ ++           +  + AKDI +LVR R +  ++        +   I  V   R  
Sbjct: 551  ITRLLTDAANGECHSPKGPLIAKDIAILVRDRNEAAVMKTAL----SKRHIGAVFLSRDS 606

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D L  +++  + R + + +D+ +    L + L  +S + I          + + E   
Sbjct: 607  VFDTLEAREMALILRSLANPKDERALRSALATALLGYSAEQIHAFNQDEEHRQLLLEQFF 666

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
                    +       +  L+ +A           +L     +     +        L +
Sbjct: 667  NLHQVWQKR-----GIMPALLSLANSTK---LIDRLLHTASTQTDAQEQDATNGERRLTD 718

Query: 532  FLNFT--LRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGL 583
            F +    L+ +      +  L++  EQ           +    +  N V+I+T+H +KGL
Sbjct: 719  FRHLAELLQQKATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGL 778

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E PV F+        + +    M    + +      +W  +            +  K+ T
Sbjct: 779  EYPVCFVPFVSLARDNRRRPTPMLYHRTNDAGEQELVWDIEGTDEG------WERAKQET 832

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT-- 701
              E  RLLYV +TR      +   +++   K   +   ++            +    +  
Sbjct: 833  LAEDLRLLYVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGIGDSECDFASIC 892

Query: 702  ----NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK--------- 748
                      E I+ +      +  PL   + + Q++  + + ++  +P +         
Sbjct: 893  NAAQQLAQDVEAISIDKVPDDIDERPLPSSQDVAQILSAKTLTRQYCTPWRVGSYSGLVK 952

Query: 749  ------------------NDINEPYILN-PSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                               +      L+ P     + +  + +  +  +  N G  +H +
Sbjct: 953  NTSHGKAAPGADDEALGTLEYMAAQTLSIPDDPSHEQQDGMLNRFNFERGANAGSFMHLV 1012

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------------- 836
            L+ I      K              + P  +   L      +L  P+             
Sbjct: 1013 LEEIDFTQADKDLPLQLPKAMLKYGIAPEWQT-VLHTWYLDMLHAPLGLMPSTVQSSKVP 1071

Query: 837  ------------------------MTTAMSCDSYSEVSV--------------------- 851
                                    +      D+  E+                       
Sbjct: 1072 TTMPSTSAFENHSKTAKPEHPGLCLAKLSPQDTLVEMEFYLPLSELKDTELNALLQQFGY 1131

Query: 852  SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIA 902
               +       ++ G ID     Q   +I +YK++H             +     + +  
Sbjct: 1132 ESTLKFDDLKGMLKGFIDLTFEYQGKYYIADYKSNHLGDNINAYHQSALQSAITDHRYDL 1191

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1192 QYILYSLALHR 1202


>gi|302188185|ref|ZP_07264858.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. syringae
           642]
          Length = 669

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/646 (15%), Positives = 211/646 (32%), Gaps = 125/646 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   K    +DF
Sbjct: 129 DDGVDEIKNMIGSWKNDLILPAEALENARNPKE-----QTAAIVYTHYQRTLKAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILLPVKLFQEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 233 --TRHQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLISNNPHAFEK---------------------QLWSEMGHGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCRNEDAEAERVAMEILTLH---------LRTDRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    + Q   +++  +        P  
Sbjct: 415 STTLEKLGNYATERKVSMYAATDEIGLGEHLDSRYTDRLQRFKRWMDGVRQQCAQNDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              +E      +  +   +      L  ++    +++E I +L
Sbjct: 475 ALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKL 534

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++    +    V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +         + +   +D   +    T +  K        +    
Sbjct: 620 GEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 665


>gi|239817530|ref|YP_002946440.1| exodeoxyribonuclease V, subunit beta [Variovorax paradoxus S110]
 gi|239804107|gb|ACS21174.1| exodeoxyribonuclease V, beta subunit [Variovorax paradoxus S110]
          Length = 1263

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 142/967 (14%), Positives = 278/967 (28%), Gaps = 152/967 (15%)

Query: 62   IEERFSLLSSFFLTQK---FTPQKNIITQEINKKSPDLKE----KLKKSQDEFIKIRDRF 114
              E     +   L  +    T +       + +      +          +  +      
Sbjct: 276  WLEALERWARDPLLDRPDVKTGETRFTPDGLREACKAGFDVDPPACFAEFEALMHALSEL 335

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRY 171
                      A+  +A  L       K++     F D++   +  L      + +  +R 
Sbjct: 336  EPVATPMRLHAAFHIAARLAT----LKRQAGTFGFADMLSRLDQALDPAGNVEAAERLRS 391

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            +I  +    L+DE QDTS +Q  +   L          +     L  +GD KQSIY F G
Sbjct: 392  RIVAQYPVALVDEFQDTSPVQARIFDRLYR-----IAENDRQTALLLIGDPKQSIYGFRG 446

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A+    L  +R                 L  + RSTA ++  V+ + +  E   G     
Sbjct: 447  ADIHSYLMARRA---------TAGRHYMLGTNHRSTASVVAAVNHLLNHAEVRDGEGAFM 497

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDS--QCNPQQESWTSYFDSLPQESS--ASILAR 347
                        +     L      + +     N    + T   D+    S+      A 
Sbjct: 498  YRRPPAAVGSPAENPLPFLSVAARGRTERLVGANGAAPAVTLALDAGLSRSAVSRRSFAA 557

Query: 348  RIAYTISNMIGT---DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            R A  I  ++                ++  DI VLVR  K+   +    R L+  +  SV
Sbjct: 558  RCAERIVELLNDPAVGFEAEGQDFARLRPADIAVLVRTGKEAAAVQ---RELRRRHVASV 614

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +DR  +      +DL+   R + S  D       L +     S  ++ ++        
Sbjct: 615  YLSDRQSVFASAEAQDLLHWLRAVASPLDIRLARAALATRSVGLSIAELMRLADD----- 669

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK--KGRQQFISRFG 522
               +      +  + +   V +    L  + Q     D     LG     G+Q+  +  G
Sbjct: 670  ---DEAFDERSEQLRQLHVVWQQQGVLTMLRQTLHLLDLPARWLGTLPVDGKQEVDTAGG 726

Query: 523  NEVIDVLDEFLNFT--LRNEQNSYSSLQELISELEQY-------PPTIKRAHSANHNEVR 573
             +    L  F++    L+         Q L+  L +                 ++ + V+
Sbjct: 727  QDGERRLTNFMHLAELLQAASAQLDGEQALVRWLAEQTQGEPTRNDDQIVRLESDADLVK 786

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            ++TVH +KGLE P+VF+          +   +M  +   +    + +         ++  
Sbjct: 787  VVTVHASKGLEYPLVFMPFASGFRPVERRTTRMLNLSDADGQRSLHL---------HLSD 837

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
              I    K    E  RLLYV +TRA   +   +    + ++++ +  R+    V      
Sbjct: 838  AHIDAADKERHREDLRLLYVALTRARHAVWVGLAALKSGNSDRCTFARSAIGYVIHGHEE 897

Query: 692  ---DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
               D    +I+   +   D  +           TPL+  E    L D             
Sbjct: 898  VHQDALKTQIEKVIAGCPDVVLVEAQPIEALARTPLQPREAAPALRDLHSYTATFERHWT 957

Query: 749  ---------------------NDINEPYILNPSTIDTKGKTN------------------ 769
                                   + +   +  +++D                        
Sbjct: 958  IGSFSALVRDLPSTGAVAASIAVVRDDERVTLASVDEAALAPHGIASWDAVALSAATVMA 1017

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIFTLP-----EHKRKNFITSYCTKNAKLWPAKEYK 822
               +      +    G  +H  L+ + +          R   +   C +      A E +
Sbjct: 1018 EVGQPWHRFPRGAMPGNFLHDQLEWLASEDFDLNRSPARSEQLQRRCERQGWGDRATEVR 1077

Query: 823  NLLLSITRLLENPMMTTAMS-CDSYSEVSVSGK-------------------------IN 856
              L  + R    P+     S      E+                              + 
Sbjct: 1078 EWLGEVLRTPIPPLGADLESVGTVLPEMEFWLPVDGLSASAIDGLCRDHLLAGCARPILP 1137

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIY 907
              +   ++ G  D +       ++ +YK++H    +  + P           +  Q  +Y
Sbjct: 1138 ERELRGMLMGFADVVFEYGGRYWVLDYKSNHLGESDANYTPEALQGAMAAHRYDVQAGVY 1197

Query: 908  EKILKDS 914
               L   
Sbjct: 1198 LLALHRL 1204


>gi|167968315|ref|ZP_02550592.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
            H37Ra]
          Length = 1031

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 130/960 (13%), Positives = 259/960 (26%), Gaps = 175/960 (18%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  +         +    +   L +            L     E      V+DF   +
Sbjct: 125  ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 184

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 185  ASAARLAATSP---QVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 235

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R          + G    ++EL  S+R+    L V
Sbjct: 236  LALTAVGDPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPVLELLTSWRNPPQALRV 292

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + + +           S      R       G V+                        
Sbjct: 293  ANGISAEARRR------SVAVRALRPRPDAPPGAVRCALL-------------------- 326

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                 ++    +A  +                     ++     VLVR+  D   I    
Sbjct: 327  --PDVQAEREWIADHLRMRYQRAEADG----------VKPPTAAVLVRRNADAAAIADTL 374

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I         L     + +++A+ R +       + + +L  P +     D+
Sbjct: 375  RA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 430

Query: 454  FKICT-----------------------QRHETETVYEYIQK------FANCGISKFQHV 484
              +                            +   + + I        ++  G  +   +
Sbjct: 431  AALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGAL 490

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRN- 539
               +  L       S  D    +        +  +      G    + LD F +      
Sbjct: 491  AGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYA 549

Query: 540  ----EQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLV 591
                 ++S +S+  L++ L+              +   + V+++TVH AKGLE  VV + 
Sbjct: 550  ERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVA 609

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN--- 648
                 VF     +   +       P +      + +    V D      +    +     
Sbjct: 610  HLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEH 669

Query: 649  -------------RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------- 680
                         RLLYV +TRA D L++  H       K    +               
Sbjct: 670  RRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAA 729

Query: 681  ---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  +V          ++  L ++  +  W A   +    +              D  
Sbjct: 730  AGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLP 789

Query: 738  KIPKKLFSPIKNDINEPYILNPSTI----------------DTKGKTNLESLLSDNQTFN 781
                 +  P +           + +                +    ++L  L+ D     
Sbjct: 790  GSTTDIDHPPRPGDAPWSTYVDALLAARAHAARGAPARGLPNHLSVSSLVELVGDPVGAR 849

Query: 782  RGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--- 836
            +     +L+  +   P+      +   ++  +        +  +L  +  R + +P    
Sbjct: 850  Q-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELA 904

Query: 837  -MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQ 891
             +  A +  S++     +V      P  D ++ GRID + +       + ++KT      
Sbjct: 905  ALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRIDAVFVDPDGGATVVDWKTGKPPHG 964

Query: 892  EIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                       QL++Y          P  S+     YV      +  +       A + T
Sbjct: 965  PAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFYYVRSGITVVPDELPAPGELAMLLT 1022


>gi|222110700|ref|YP_002552964.1| uvrd/rep helicase [Acidovorax ebreus TPSY]
 gi|221730144|gb|ACM32964.1| UvrD/REP helicase [Acidovorax ebreus TPSY]
          Length = 1101

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 130/941 (13%), Positives = 295/941 (31%), Gaps = 101/941 (10%)

Query: 12   SYELIYKDLWPLPYFQ-VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
                ++     L         + +  +     N T  K A  +  A     + +R   L 
Sbjct: 240  DLAGLHHPADALASDAARQRWHAWAQVLGAQANKTPQKAADAVIDAWLCDDLGQRLDTLR 299

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              F           + +          ++ +         R +   +   +       LA
Sbjct: 300  KAFFVASEDRLSKNLEK------FAAAQEAEGELQRLCAARRQHEAWLHQQR---MARLA 350

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            + L A + + K++   +D  D+      +L    +S W++ ++D  + H+L+DE QDT+ 
Sbjct: 351  RALIAQFAQLKRERGWVDMNDVERTALVMLSDPILSGWVQERLDARVRHLLVDEFQDTNP 410

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +QW+ + +    +         P ++F VGD KQSIY F  AEP+     +         
Sbjct: 411  LQWQALHAWLAGYAGAGGGQQ-PPSVFIVGDPKQSIYRFRRAEPQVFKAAQ-----AFVR 464

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             G    ++    + R+   ++  V++     +     +        H +        ++L
Sbjct: 465  EGLGGDLLACDHTRRNAIGVIAAVNRAMQAAQAQGEYAGFRD----HTTESRDPGQLLRL 520

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                              W         E+  ++        +          +      
Sbjct: 521  PPITAPDGGDAAAATAPEWRDTLTQPRHEAEETL-------RMRECAQAAQWVAAQIAAG 573

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +Q ++I+VL RKR     +    R L     +  V  ++  L +   ++D++AL   ++S
Sbjct: 574  VQPQEIMVLARKRDRLASLQEALRAL----HVPCVQPEKAELGEAPEVQDIVALLDALVS 629

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKI-----CTQRHETETVYEYIQKFANCGISKFQHVI 485
               DLS    L+SPLF  ++  + +I      T    +   +  + + +       Q + 
Sbjct: 630  PGHDLSLARALRSPLFGLTDHALVQIALRVRQTAAEGSPCSWFDVLQKSELLPPDLQALA 689

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL--DEFLNFTLRNEQNS 543
              + +     +   PHD    I        +F +         +  +         +Q+ 
Sbjct: 690  PVLAQYKRWVETRPPHDALHAIYEHGDVPARFAAAAPASQRAGVLANLRALLAAALQQDG 749

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               L           P ++         VR++T+H AKGLE+  V L+DT ++    + +
Sbjct: 750  GRYLTAYAFVRAMKRPGMRAPGRVEAQAVRLLTIHGAKGLEAHSVLLLDTDARAQKAETM 809

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
              +   P     P   +++    +      DL+       Q E    LYV MTRA   L 
Sbjct: 810  GALVDWPGEQAAPLRFVFLASESNPPPSAVDLLAAELAERQREELNTLYVAMTRAKHCLA 869

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            +    +++    +   +W++ + +S  +        L +  +       +   +      
Sbjct: 870  LSAVQSST----AAPGSWWNRLAESLQDAPVPPAAPLGDVADDAAVALPQLPPYAGAAPG 925

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
             +       +   Q                                            +G
Sbjct: 926  AQAAAAGAPVSTPQS------------------------------------------RQG 943

Query: 784  LIIHKLLQVIFTLPEHKRKNF--ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
              +H+LL+    +   +                     E      ++ R +       A 
Sbjct: 944  EAMHQLLEQAGVVGAPRAGGVWPARRLAQLARDFDITAEAAAQAAAMARSILQGEGAWAW 1003

Query: 842  SCDSYSEVSVSGKINCPKKD-----IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            + D   +      +    +      ++   +           ++ +YK+     ++ + +
Sbjct: 1004 NPDHVEQALNEAPLVYQGQGLRLDRLVRLRQP----REGARWWVLDYKSATAPERQPQLM 1059

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
                  QL +Y + +   +P + +    +   + ++ ++  
Sbjct: 1060 A-----QLRLYREAVGAQFPGEQVGAAFL-TGDGRLVVVDA 1094


>gi|307547016|ref|YP_003899495.1| DNA-dependent helicase II [Halomonas elongata DSM 2581]
 gi|307219040|emb|CBV44310.1| DNA-dependent helicase II [Halomonas elongata DSM 2581]
          Length = 762

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 113/734 (15%), Positives = 234/734 (31%), Gaps = 150/734 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +    +S                +  + + L   S        
Sbjct: 59  GAGSGKTRVLVHRIAWLMQAEGLSPYAVLAVTFTNKAAREMRTRLEALLGISLRHVWVGT 118

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  ++   L      + +     + +     D  ++L+  +                   
Sbjct: 119 FHSIAHRLL------RTHWQDARLPQHFQIIDSDDQLRLIKRLLKDYNIDDERYPPRQVQ 172

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +    +++     A L+    L   Y+   ++  ++DF +L++ + +LL+  
Sbjct: 173 SFISGCKEEGLRPHQVDAHGDAYLSQMVELYERYQLTCERGGLVDFGELLLRSLELLRDN 232

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                +     +   H+L+DE QDT+ +Q+  ++ LT               +  VGD+ 
Sbjct: 233 PA---LLAHYQERFGHVLVDEFQDTNTLQYAWLKLLTGMRTP----------MTVVGDDD 279

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA  + + R +               ++ L  ++RST+ IL   + +     +
Sbjct: 280 QSIYGWRGARIENIRRFENEFP--------DTKLVRLEQNYRSTSVILDAANALIRYNAD 331

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G                      +LW        +  + +  S    F+ L +     
Sbjct: 332 RMGK---------------------ELW-------TAGDHGEPISVYGGFNDLDE----- 358

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR I  TI   +             I  ++I +L R    + +I            + 
Sbjct: 359 --ARYIVDTIRERVAEG----------INRREIAILYRSNAQSRVIEETL----IRQGVP 402

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHE 462
                     + L IK+ +A  R +L+++DD S   ++  P        +  +    R  
Sbjct: 403 YRIYGGQRFYERLEIKNALAYLRLLLNRDDDASLERVINVPARGIGTRTVETLRNRARQT 462

Query: 463 TETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
            +++++ +    + G  +       +     I +L + A   S H+    +       + 
Sbjct: 463 GDSLWQSLHNATSDGSLRGRAVSSLKAFADLIEQLDNEAAGLSLHEIIDRVNERTGLVEH 522

Query: 517 FISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI--------KRAH 565
             +  G +    ++ L+E +       Q       E    +      +            
Sbjct: 523 HRNEKGEKGQARVENLEELVTAAKAFTQGEAFEGVEAGEGMAALEAFLAEAALNAGDHEA 582

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               + V++MT+H+AKGLE PVVF+      +F HK                        
Sbjct: 583 DEFEDCVQLMTLHSAKGLEFPVVFMAGVEEGLFPHKMS---------------------- 620

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                         +    EE  RL YVGMTRA  +L +          K   +     +
Sbjct: 621 ------------MEEPGRLEEERRLCYVGMTRAMKKLYLTHAELRRLHGKETFQRPSRFL 668

Query: 686 YDSFHNDERVKKIK 699
            +   N     +++
Sbjct: 669 REVPENFMEEVRLR 682


>gi|41409398|ref|NP_962234.1| hypothetical protein MAP3300c [Mycobacterium avium subsp.
            paratuberculosis K-10]
 gi|41398229|gb|AAS05850.1| hypothetical protein MAP_3300c [Mycobacterium avium subsp.
            paratuberculosis K-10]
          Length = 1096

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 142/955 (14%), Positives = 271/955 (28%), Gaps = 167/955 (17%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  +         +    +   L L+           L    +E  +   V+DF   +
Sbjct: 196  ELERLVHALPAGPYQRDRGPSQWLLRLSGTQSERAELVPLLEALDERMRAVKVMDFGMQM 255

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +   L+        +   +      +L+DE QDT   Q   + +L              
Sbjct: 256  ASAARLVA---AFPQVGADLRGRYRVVLLDEYQDTGHAQRIALSALFA------GGVDDG 306

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R      +   + G    ++EL  S+R+    L V
Sbjct: 307  LALTAVGDPIQSIYGWRGASATNLPRFTTDFPR---SDGTPAPVLELRTSWRNPPRTLRV 363

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + + +           S      R       GTV+         +              
Sbjct: 364  ANAISAEARRR------SVAVHALRPRPDAPPGTVRCALLPDVVAER------------- 404

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                           IA  I                 +      VLVR+  D   I    
Sbjct: 405  -------------EWIADHIDAHYRRARAD------GVSPPTAAVLVRRNADAAPIADAL 445

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I V       L     + +L+A+ R +       + + +L  P +     D+
Sbjct: 446  RA----RGIPVEVVGLAGLLSVPEVAELVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 501

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC--------------- 498
              +  +                  I+          + + +A                  
Sbjct: 502  AALWQRARALGGAGTAGGPATAEAIASAADPRNVEADAVCLADAIADPGPAEGYSAAGYA 561

Query: 499  ----------SPHDFFTLILGAKKGRQQFISRFGNEVI----------DVLDEFLNFTLR 538
                      +        LG      + +     EV           + LD F +    
Sbjct: 562  RIAALAAELSALRAHLDHPLGDLVAVVRRVMDLDCEVRAAAAAGWAGTEHLDAFADVVAG 621

Query: 539  N---------EQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLES 585
                      + ++ +S+  L++ L+              +   + V+++TVH+AKGLE 
Sbjct: 622  YAERADTGGTDASASASVAGLLAFLDVAESVENGLPAAPLAVARDRVQVLTVHSAKGLEW 681

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ----------------SKSRN 629
             +V +      VF     K   +  +    P +     +                 K  +
Sbjct: 682  QLVAVAHLSGGVFPSTTAKTTWLTDAAELPPLLRGDRARPGALGIPVLDTSDVTNRKQLS 741

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------- 680
            + +S+  + L++   +E  RLLYV +TRA D L++  H   +   K    +         
Sbjct: 742  DKISEHRRQLEQRRVDEERRLLYVAVTRAEDTLLVSGHHWAATGIKPRGPSDFLCEIKDV 801

Query: 681  ---------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE---NTPLEREE 728
                         V          ++  L ++  +  W A   ++   E      L R+ 
Sbjct: 802  IDASAAAGDPCGTVEQWAPAPADGERNPLRDNAVEAVWPADPLASRRGEVERGAALVRQA 861

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILN----PSTIDTKGKTNLESLLSDNQTFNRGL 784
               +  D     +   + +   + E   +      +       ++L  L  D     R  
Sbjct: 862  MAAEPGDPGADVEGWAADVDALLAERARVTGPPPQALPGQLSVSSLVGLARDPAGAAR-R 920

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSC 843
            + H+L       P     N   ++  K        E  +L  +    + +   +    + 
Sbjct: 921  LRHRLPSR--PEPHALLGNAFHAWVQKFYGAECLFELGDLPGAADSDVGDTAELAELQAA 978

Query: 844  ------DSYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHI 896
                   + + V+V      P  D ++ GRID +   S     + ++KT    P   E +
Sbjct: 979  FLESPWAARTPVAVEVPFEMPIGDTLVRGRIDAVFAESDGGATVVDWKTGA-PPDSPEAM 1037

Query: 897  PYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                  QL++Y          P  S+     YV      +      +   A +  
Sbjct: 1038 RQA-AVQLAVYRLAWAALAKVPESSVRTAFHYVRARTTVVPEALPTSDELAGLLA 1091


>gi|91215425|ref|ZP_01252396.1| ATP-dependent helicase [Psychroflexus torquis ATCC 700755]
 gi|91186377|gb|EAS72749.1| ATP-dependent helicase [Psychroflexus torquis ATCC 700755]
          Length = 1045

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 139/850 (16%), Positives = 282/850 (33%), Gaps = 112/850 (13%)

Query: 86   TQEINKKSPD----LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
            T+++N +       +K  + +  +    +      Y+     +  L+L   +    E  K
Sbjct: 291  TKKLNDEVKSRVFSMKSIIVEKFEAVKSLYSNKKLYEKVHRNITQLSLLGAVKGEMELLK 350

Query: 142  KKNCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            K+  ++   DF   I    ++ K+   + +I  ++ ++  H  IDE QDTS +QW  +  
Sbjct: 351  KEQNIMLISDFNKKISE--EIKKQP--APFIFERLGEKFQHFFIDEFQDTSRLQWNNLIP 406

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            LT +          P TL  VGD KQSIY++ G +  + +   +      +    K S+ 
Sbjct: 407  LTANALSALFDDEKPGTLTLVGDAKQSIYAWRGGDAHQFIDLSQ----GDSPFSTKQSVE 462

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  +FRS+  I++  +  F                      ++       L+     + 
Sbjct: 463  TLSSNFRSSKAIVSFNNDFFE-----------------FVGHQLNDEKLKTLFSGEHLKQ 505

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                  +      + ++   E  A +    I   I                     DI +
Sbjct: 506  KMHKTEEGYVNLRFLEASSNEERAEVYPEEILKIILQKKEQGFPL----------GDICI 555

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            L+R++ +   I        N   I ++ ++  ++     ++ ++AL   +   +D+LS  
Sbjct: 556  LIRQKSEGIAIAEYL----NQQNIPIISSETLLIKSDDQVQFVLALLHVLNDDKDELSKA 611

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
             +L+  L   S  +       R+      +   +        F                 
Sbjct: 612  EVLEKILTRLSFSEEEHFTILRNTLHKGEDVFWESLKQLGFTFNS---------KHFHTL 662

Query: 499  SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
              +D    ++   +  +             L  FL+      Q    +L   +       
Sbjct: 663  PFYDAVEYLIHRFQIEK--------FASAYLQFFLDEVFEFTQKQNGNLNAFLDYWSNQG 714

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                   + + N V+IMT+H +KGL+ PVV       Q+           +P     P  
Sbjct: 715  NNKSIVSTESENAVQIMTIHKSKGLQFPVVIFPYAKQQIDYTGTSHLWVKLPEKFQIPFA 774

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
             I  P     N   ++   +L    + E   +LYV +TRA+ +L I    +     K   
Sbjct: 775  LITKPGRDIDNPDYTESYLNLVNGLEMENINILYVALTRAASELFILSEDDRDKSGKIKP 834

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
             T+  ++     ++ +  K+ +     K                         Q+ + + 
Sbjct: 835  NTYSGLLMSYLESEGKTIKVLIEYEWGKSTLPKK------------------GQVSEVEN 876

Query: 739  IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
            I  K  SP  +           +++                  +G +IH LL  I  +P 
Sbjct: 877  ISFKFHSPSPSL----------SLNLVTTAGKLWNEDLTDALQKGNLIHSLLSRI-HIPS 925

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
                +    Y       +  ++       +  ++ +  +    S D   E+     +   
Sbjct: 926  DINASLEWHYTN---GFFEEEKLGIYRNLLNNIVTHKELKDYFSNDY--EIWNEKDVFF- 979

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             K+ ++  R D+++I   N  + +YKT     Q        HI Q++ Y + L       
Sbjct: 980  -KNQLL--RPDRVNIKGGNAVLIDYKTGKTSNQ--------HINQINTYAESL--IALKY 1026

Query: 919  SLV-CLLIYV 927
            ++   LL+Y+
Sbjct: 1027 NVKNKLLVYL 1036


>gi|111115437|ref|YP_710055.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
           afzelii PKo]
 gi|216263384|ref|ZP_03435379.1| ATP-dependent DNA helicase PcrA [Borrelia afzelii ACA-1]
 gi|110890711|gb|ABH01879.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
           afzelii PKo]
 gi|215980228|gb|EEC21049.1| ATP-dependent DNA helicase PcrA [Borrelia afzelii ACA-1]
          Length = 659

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 103/578 (17%), Positives = 193/578 (33%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 165 IFRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 221

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 222 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGASYNNMLQFEKDY-------- 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 263 -NAKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           +  + D + +          +A  I  +          K    Q
Sbjct: 307 -------------VIDFFIFEDEIQES-------EFVASQIIEL---------SKLEGFQ 337

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           +K I VL+R       +  + +       I    +          IKD+++    I++ +
Sbjct: 338 SKKIGVLMRTNALFKNVEMIFK----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 393

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +   A                 
Sbjct: 394 SDYDLLRIINIPRRGIGKEYLKKIRDMADKKGCCIYDALCDIAFSFASISSYDKVLNKQV 453

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +    +  +  +    ++ + +     +S               +
Sbjct: 454 IESIEDFVSFIEEYQYKFSIKKNTYSNIIKEMIESIEYWGFLVSENPNSIKVAEYKYQNI 513

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E      L++L S L             + N  + +MTVH+AKGLE   V
Sbjct: 514 EGFLSIIKNWESKQLGELRDLSSFLNYIVLQSNEVSEESENININLMTVHSAKGLEFDYV 573

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H  I +   +    +                                  
Sbjct: 574 FFIAVEDNIIPHHRIIEDSELDLEEE---------------------------------R 600

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D L+I   +    +++  ++     + 
Sbjct: 601 RVFYVALTRAKDSLVITMANKRKKDRQIFEQLPSRFIS 638


>gi|87302003|ref|ZP_01084837.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701]
 gi|87283571|gb|EAQ75526.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701]
          Length = 797

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 95/605 (15%), Positives = 194/605 (32%), Gaps = 96/605 (15%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQS 225
             +R+       H+L+DE QDT+  Q+++I+ L       +  +    R++F VGD  QS
Sbjct: 238 EQVRHYWHGRFRHVLVDEYQDTNRTQYDLIKLLVTGGRDPETFNDWGGRSVFVVGDADQS 297

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IYSF  A+   ++  +     RA++   + ++++L  ++RSTA IL   + + +      
Sbjct: 298 IYSFRAADFTILMGFQDDFGDRASDEDTR-TMVKLEENYRSTATILEAANALIAHNSERI 356

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 T                                +  + T   D + +       
Sbjct: 357 DKVLRPTR----------------------------GEGELITLTRCDDEIAE------- 381

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  + + +  +              +   D+ +L R    +  +          + I  +
Sbjct: 382 AEAVVHRLRML--------EAAHPELSWGDMAILYRTNAQSRAMEESL----VRWGIPYI 429

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TE 464
                   D   IKD++A  R +++  D +S + +L  P     +  + ++     +   
Sbjct: 430 VVGGLRFYDRREIKDVLAYLRLLVNPADSVSLLRVLNVPRRGIGKTTVQRLSDASAQLGL 489

Query: 465 TVY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            ++      E ++  A           + I +L    Q   P +    ++       + I
Sbjct: 490 PLWEVVNDAEAVRSLAGRSAKGLLQFSELISDLSGRIQDAPPAELVQRVMEQSGYLAELI 549

Query: 519 SRFGNEVID---VLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           +   +E  +    L E +N  L+  E+N   SL+  ++          +      + V +
Sbjct: 550 TEGTDEAEERRRNLQELVNAALQYQEENEEGSLEGFLASAALASDADSKD--TAADRVTL 607

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H +KGLE PVV LV     +F                                    
Sbjct: 608 MTLHASKGLEFPVVCLVGLEQGLFPS---------------------------------- 633

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                  S  EE  RL YVG+TRA ++L +   S         +     +       +  
Sbjct: 634 YRSLEDPSALEEERRLCYVGITRAKERLFLSHASERRLWGGMREPAVPSVFLSELPPELV 693

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
              I  +           +  T                      + ++  +   +  ++ 
Sbjct: 694 QGDIPQSGGAAIRREQRLDRLTRVDREESQRVAAGGSASAPTNAVRRRAPARAWSIGDQL 753

Query: 755 YILNP 759
              + 
Sbjct: 754 RHASF 758


>gi|74318467|ref|YP_316207.1| ATP-dependent DNA helicase UvrD [Thiobacillus denitrificans ATCC
           25259]
 gi|74057962|gb|AAZ98402.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 726

 Score =  256 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/639 (14%), Positives = 204/639 (31%), Gaps = 113/639 (17%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               ++     +  ++          +   Y+   ++  V DF +L++ + +LL + +  
Sbjct: 151 INGHKEAGRRARDAEAYDEYSMRLAEIYEAYDAQCQREGVADFPELLLRSYELLYRNE-- 208

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R        HIL+DE QDT+ +Q+  ++              +   +FAVGD+ QSI
Sbjct: 209 -PLRQHYQDRFRHILVDEFQDTNTLQYRWLKLFAG----------AHSVIFAVGDDDQSI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+F GA+   +   +R             ++I+L  ++RS  +ILT  + + +   +  G
Sbjct: 258 YAFRGADTANMAAFEREFAH--------GNVIKLEQNYRSHGNILTAANTLIAQNAHRLG 309

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +  +           G+   V                             +  S    A
Sbjct: 310 KNLWTAAG-------EGEPIRVF----------------------------EAYSDQDEA 334

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +   + N+              I   D+ +L R    + ++            ++   
Sbjct: 335 SFVVDEVRNLNREG----------IAYADMALLYRSNAQSRVLEHAL----FSAGVAYRV 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465
                  +   +K  +A  R +   EDD +F+ ++  P        + ++         +
Sbjct: 381 YGGLRFFERQEVKHALAYLRLLTHPEDDGAFLRVVNFPTRGIGARTLEQLSETAARAGTS 440

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNE 524
           +++     A     K     + I ++          +    ++ A      + +   G +
Sbjct: 441 LWQA----ACTSGGKVAAFARLIEDIKRATADLPLPEAIGHVVEASGLADYYRADKDGAD 496

Query: 525 VIDVLDEFLN--------FTLRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIM 575
            ++ L+E +N               +   +  EL   L        +    A  + +++M
Sbjct: 497 RLENLNELVNAAALFAEESAAEASASDEPAPSELDRFLAHAALEAGEHQAEAGRDALQLM 556

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH AKGLE   VF+      +F H+           ++                     
Sbjct: 557 TVHAAKGLEFEAVFITGLEESLFPHEQSTLQGSGTHADEG-------------------- 596

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    EE  RL+YV +TRA  +L +    +     +         + +        
Sbjct: 597 --------LEEERRLMYVAITRARRRLYLSHAQSRMLHGQVRYGIASRFLSELPEQVLLH 648

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              + T +  ++       +    E+T     +++    
Sbjct: 649 LNRRATPAHVREAPAPSPRAARAGEDTGYRVGQSVAHAR 687


>gi|330957324|gb|EGH57584.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 669

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 101/646 (15%), Positives = 208/646 (32%), Gaps = 125/646 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   K    +DF
Sbjct: 129 DDGVDEIKNMIGSWKNDLILPAEALENARNPKE-----QTAAIVYTHYQRTLKAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILVPVKLFQEHPD---VLEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             S      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 233 --SRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +A                        QLW  +    +          
Sbjct: 283 ILRCANVLISNNPHAFEK---------------------QLWSDMGHGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +            R     D  +L R      LI
Sbjct: 313 -----RVIRCRNEDAEAERVAMEILTLH-------LRTDRP--YSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    + Q    ++  +        P  
Sbjct: 415 STTLEKLGNYATERKVSMYAATDEIGLGAHLDSRYTDRLQRFKCWMDGVRQQCAQNDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              +E      +  +   +      L  ++    +++E I +L
Sbjct: 475 ALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKL 534

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++    +    V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +         + +   +D   +    T +  K        +    
Sbjct: 620 GEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 665


>gi|255348990|ref|ZP_05380997.1| DNA helicase [Chlamydia trachomatis 70]
 gi|255503529|ref|ZP_05381919.1| DNA helicase [Chlamydia trachomatis 70s]
 gi|255507207|ref|ZP_05382846.1| DNA helicase [Chlamydia trachomatis D(s)2923]
 gi|296435215|gb|ADH17393.1| DNA helicase [Chlamydia trachomatis E/150]
 gi|296438934|gb|ADH21087.1| DNA helicase [Chlamydia trachomatis E/11023]
          Length = 634

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 174/547 (31%), Gaps = 118/547 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + + A Y+E  +    LDF+DL+  T  LL+  +    ++ +       +LIDE QDT+
Sbjct: 164 TRTVYAEYQEQLRAANALDFDDLLFLTEKLLRIPE----VQQEYANHWKALLIDEYQDTN 219

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L            +   +F VGD  QSIYS+ GA    +L  ++   +   
Sbjct: 220 HAQYLITKRLAA----------AHNNIFVVGDPDQSIYSWRGANISNILNFEQDYSQAL- 268

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RS   IL   + +          +  S                  
Sbjct: 269 -------VVRLEENYRSCGTILEAANALIQNNSARLEKTLRSVK---------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          +   +T   D           A ++   ISN+            +
Sbjct: 306 -----------GPGDKIFCFTGKNDRDE--------AEQVLEEISNLHS---------YK 337

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I   DI +L R    +                               I+D++A  R   
Sbjct: 338 DIPLSDICILYRTNFQSQSFEAAL----LKRGYPYEIIGGISFYKRREIQDILAFLRLFS 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH----- 483
           +  D  +F   +           +  +    +     + +           +        
Sbjct: 394 NNYDMAAFERTISLKKCGIGATTLAALMNYAKTTDLPILQACWDVLEKKSIRLTKKQQQG 453

Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLR 538
               + + H++  +   C  H+F    +                 +  + L++ L  T  
Sbjct: 454 LFSYLTHFHQMEQLYGNCDLHEFINETIRITDYLSILKEDPETYEDRKNNLEQLLAETQI 513

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++S  +L   + +L           +++H+ +++MT+H +KGLE PVVFLV     + 
Sbjct: 514 WGKSS-ENLPGFLEDLALKSSAD--ETASSHDRLKLMTIHNSKGLEFPVVFLVGLEENLL 570

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H + K MH                                     EE  RL YVG+TRA
Sbjct: 571 PHANSKGMH----------------------------------ENIEEERRLCYVGITRA 596

Query: 659 SDQLIIC 665
            + L + 
Sbjct: 597 QEYLYLS 603


>gi|296121490|ref|YP_003629268.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296013830|gb|ADG67069.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 680

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 106/662 (16%), Positives = 209/662 (31%), Gaps = 120/662 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           Q+   +K +   ++   +    + L +     ++        ++  S      LA     
Sbjct: 116 QESAARKALQVLKMTDTALKPGDLLAQISRWKMQGVMPDLAQEIADSDHE--QLAGMAYR 173

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+ A K    +DF+DL+  T  L K    +     +     + + IDE QDT+ +Q+ +
Sbjct: 174 RYQLALKAAGGVDFDDLLFLTFQLFKHHPEA---LERQQNRFDFVQIDEYQDTNELQFRL 230

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I S+              + L  VGD+ QSIY + GAE K +L  K+             
Sbjct: 231 IESIVR----------RHQNLCVVGDDDQSIYGWRGAEVKHILGFKQSFPA--------A 272

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            ++ L  ++R T  I+ + +++ +           +         R              
Sbjct: 273 KVVRLEDNYRCTESIIQLANQLVAHNRGRHEKRLIAHRGGTSVVFR-------------- 318

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                             +   +++ A  + R IAY I  +              ++  +
Sbjct: 319 ------------------EYPDEQAEAEGVVRDIAYLIHQL-------------NVRPCE 347

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           I +L R  +   +     R      +I           D   IKDL A  + +++  DDL
Sbjct: 348 IAILFRTNEQPRIFEHELR----RKQIHYRIVGGQSFFDRKEIKDLQAYLKVLVNPRDDL 403

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           S + ++  P     +    ++  +  + +  +  +   A          +  + +     
Sbjct: 404 SLLRIINVPPRGIGDATCERLLARAVKEKRRFWDVIPDAAAAGEITSKALNNLRQFEKQM 463

Query: 496 QFCS---------PHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLRNE- 540
                          + F  ++      ++       +        +L EF N   + E 
Sbjct: 464 SGLREAFKQPGVKLSETFLRMVETTGYAREIERTYKSAEQQEMRNLILGEFANAVSQYEA 523

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           Q+   SL+  + E+             + N + +MT+H+AKGLE   V+LV     +  H
Sbjct: 524 QSRSPSLEGYLDEISLGGSDFAAPERPDENAITLMTLHSAKGLEFERVYLVGLEEGILPH 583

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                        S+ EE  RL YVG+TRA D
Sbjct: 584 KRSVDEEF------------------------------ENPSSVEEERRLCYVGITRAKD 613

Query: 661 QLIIC---KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            L I           ++++    +   +  +       +   +  +              
Sbjct: 614 FLTITRSQSRVKWGKKRETKPSRFLKEMRTAIETTAAPEGAGIDTAARSRTTGGGRTGHP 673

Query: 718 HP 719
            P
Sbjct: 674 AP 675


>gi|118474774|ref|YP_891588.1| putative recombination protein RecB [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414000|gb|ABK82420.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 921

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 142/875 (16%), Positives = 285/875 (32%), Gaps = 180/875 (20%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           S ++   L ++F  +K      +N K   ++++L  +  ++    ++F   ++ K     
Sbjct: 226 SQIAGKPLIKEFDSKKYFEKAALNAKFMMIRDELISNLKKYYLEYEQFKINELLKFIY-L 284

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                   + +E  KK+   LDF D+     +LL     S  + +++D  I HILIDE Q
Sbjct: 285 YK-----YSRFEAIKKE-NALDFIDVTRLVYELL-GNIDSDMLYFRLDDRIKHILIDEFQ 337

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT++IQ++++  L E+   G   +    + F VGD KQSIY F G   +   R +   ++
Sbjct: 338 DTNIIQYDILLPLIEETLSGSGQNDIG-SFFYVGDIKQSIYRFRGGRKELFSRLRNSYKQ 396

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RS  +I+  V++ FS                + + S +   G
Sbjct: 397 --------IETLSLESNYRSAKNIVNFVNQTFSN----------KIKYYKTQLSCLENEG 438

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V++ E V  +       + E +                                     
Sbjct: 439 YVEVCEFVSDEFYDTLFQKIEFFVK----------------------------------- 463

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               ++  DI +L  K  D   I            + V      +L +   ++ ++   +
Sbjct: 464 --NGVRYDDIAILCWKNSDIINIKDKLE----KSGVPVATGGSNLLINSANVRVVLDFIK 517

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
           + L   D++    +                       E + E   K +    ++    +K
Sbjct: 518 YCL-FGDEIYIYSV----------------------HEFIGEKKSKLSLNATAELASTLK 554

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
           ++   +++  F                               L +    +L         
Sbjct: 555 FVASYLNLECFDK----------------------------NLLKLYEISLGY------- 579

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
             ++   +         +   +H  + ++TVH +KGLE   V + D  S+  S+  +   
Sbjct: 580 -ADIFDFIFNIQNDQTPSADTSHCGITLLTVHKSKGLEFDHVIVADRLSRAGSNIDVFIT 638

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
               S                 ++   +L +  K    EE    LYV +TRA + LI+  
Sbjct: 639 EYNNSEQKWDIKLNDSALQNLGDSEFINLKQKCKDLDYEEDINKLYVALTRAKNSLIVMS 698

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             +++  K S  + +        + D                                  
Sbjct: 699 KLDSNGLKPSYFKAFTSSKEQICYLDL--------------------------------- 725

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
            +       E       F      + E   +    +  K     E  L        G  +
Sbjct: 726 -KPFSVGKIEPSKTSMSFYGGLERLEEFETIKKQAVSDKQNDEYELNLES---IYFGEAL 781

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDS 845
           H  L++IF   E   KN  T+   +   +      ++++  +  L+ +      +   + 
Sbjct: 782 HYCLEMIFDFEEENLKNAKTALINQFGAILSKNSIEDIINRVLNLINSVEFKNIIKDKNI 841

Query: 846 YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
             E  ++        + +I  R+D + I    I + +YK+      + E        Q+ 
Sbjct: 842 LKEQDIAF-------NQVIK-RLDLLCIGDDEIVVMDYKSSKKFITQNED-------QVR 886

Query: 906 IYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
            Y  IL   YP K +V  +IY+   KV  +  + +
Sbjct: 887 EYMSILSQIYPQKRVVGKIIYLLNDKVEFLNVDLI 921


>gi|284006602|emb|CBA71863.1| DNA helicase II / ATP-dependent DNA helicase [Arsenophonus
           nasoniae]
          Length = 723

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 117/694 (16%), Positives = 221/694 (31%), Gaps = 132/694 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L   +VS  +             +  +   L  + Q       
Sbjct: 33  GAGSGKTRVLVHRIAWLLAVDKVSPFSIMAVTFTNKAAAEMRHRINALLGSDQGGMWVGT 92

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L+   L          ++    + + +   L+  +K    +  K   R   + +   
Sbjct: 93  FHGLAHRLLRAHYLDANLVQDFQILDSDDQYRLLRRIIKAINLDESKWPPRQAMWYINAK 152

Query: 123 TLASLT-------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
               L                  +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 153 KDEGLRPQHIESYGNPTEATWLRVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---I 209

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    +IL+DE QDT+ IQ+  IR L  D             +  VGD+ QSIY +
Sbjct: 210 LQHYRDRFTNILVDEFQDTNSIQYAWIRVLAGD----------TGKVMIVGDDDQSIYGW 259

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R  +               I L  ++RST +IL   + + +   N  G + 
Sbjct: 260 RGAQVENIQRFLQDFPA--------AETIRLEQNYRSTNNILKSANALIANNNNRLGKN- 310

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW           + +  S    F+ L +       AR +
Sbjct: 311 --------------------LW-------TEGADGEPISLYCGFNELDE-------ARYV 336

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                    K   +L R    + ++            +       
Sbjct: 337 VSRIKQWHEKGGSL----------KQCAILYRSNAQSRVLEEAL----LQSSMPYRIYGG 382

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
               +   IKD ++  R + ++ DD SF  ++ +P     E  +  +    R +  T++E
Sbjct: 383 QRFFERQEIKDALSYLRLVANRNDDASFERVVNTPTRGIGERTLDTVRQAAREKQLTLWE 442

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +        A       +  ++ I  L         H     ++     R  +    G
Sbjct: 443 SCEYLLREKVLAGRAAGAIERFLELIDALAKETMDMPLHVQTDRVIRDSGLRAMYEQEKG 502

Query: 523 NEVI---DVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTV 577
            +     + L+E +  T +   Q     L  L + L        +     + + V++MT+
Sbjct: 503 EKAQARIENLEELVTATRQFSYQEEDQDLMPLQAFLSHAALESGEGQAELHQDAVQLMTL 562

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+VF+V     +F  +                                    
Sbjct: 563 HSAKGLEFPLVFIVGMEEGMFPSQMS---------------------------------- 588

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             +     E  RL YVG+TRA ++L +    +  
Sbjct: 589 AEESGRLAEERRLAYVGLTRAMEKLTLTYAESRR 622


>gi|110835399|ref|YP_694258.1| ATP-dependent DNA helicase Rep [Alcanivorax borkumensis SK2]
 gi|110648510|emb|CAL17986.1| ATP-dependent DNA helicase Rep [Alcanivorax borkumensis SK2]
          Length = 673

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 107/635 (16%), Positives = 211/635 (33%), Gaps = 123/635 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 K I+ Q  +++  D  + + K    +               T   L  A    +
Sbjct: 113 DSKEILKEILRQGESERDLDAVDVIHKRISSWKNALVLPEQAVSTAETDEDLRAAMA-YS 171

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+   +    +DF+DLI+    +  ++     I  K    I ++L+DE QDT+  Q+E+
Sbjct: 172 GYDRMLRVCNAVDFDDLILMPARMFHEQP---RILEKWRNRIQYLLVDEYQDTNGAQYEM 228

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ LT                  VGD+ QSIY++ GA P+ + + +              
Sbjct: 229 VKMLTL----------PEGKFTVVGDDDQSIYAWRGARPENLAQLQEDWPT--------L 270

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +++L  ++RST  IL   + V +   +    S  S                        
Sbjct: 271 KVVKLEQNYRSTGRILKAANTVIANNPHEFEKSLWSDY---------------------- 308

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    +   +++  D   +          IA  I         F    ++ +Q KD
Sbjct: 309 ------GYGEPIRFSALRDEEAET-------EWIASDI---------FHRRLQKGLQWKD 346

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             VL R    + ++    + L     I    +          IKDLM   R +++ +DD 
Sbjct: 347 FAVLYRGNFQSRILEMKLQSL----SIPYKVSGGKSFFSRSEIKDLMCYLRLLVNPDDDN 402

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYI 488
           +F+ ++ +P        + K+        + +Y     FA           K Q    ++
Sbjct: 403 AFLRIINTPRREIGPATLEKLATWALKREQGLYHVCDDFALSEVMNPKAAEKLQKFKAWL 462

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN---- 539
                     +       ++         +      R G + I+ + + +    R     
Sbjct: 463 DAKRQFCFGQNSLQAVQELITDMDYEGWLMQNASSPRIGEKNIENIWQLVRSIERMLEKQ 522

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             ++   S L+ +I +L       ++    + + V++MT+H +KGLE P V+++    + 
Sbjct: 523 EDDEEGASDLESVIKKLVLLDMLEQQQEEDDSDRVQLMTLHASKGLEFPHVYMMGVEEEF 582

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H                                      +++    E  RL+YVG+TR
Sbjct: 583 LPH-----------------------------------RTSIEEDNIVEERRLMYVGITR 607

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           A + L + +        +    T    V +   +D
Sbjct: 608 ARETLAMTQALTRKQYGERIDTTASRFVDEMPQDD 642


>gi|217973462|ref|YP_002358213.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS223]
 gi|217498597|gb|ACK46790.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS223]
          Length = 1273

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 145/1031 (14%), Positives = 310/1031 (30%), Gaps = 173/1031 (16%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYF-QVSDINKYVSLSMETGNPTI-----LKKAQTLQQA 56
            +   LSL +S E   K  WP      ++ ++         G  T            L   
Sbjct: 225  DALALSLRQSLERF-KLAWPRGRDGLLALLHGLPLNGTRFGKATDKYPKLAAMFDALDNW 283

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                        L +  L++    +  +I         D  E+L                
Sbjct: 284  LAFGHGLPPLKELEALSLSELKLNKGGVIPSVSEAPLMDHMEQLATLIAAIKPAF----- 338

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                       +    ++  + + K++  VL  +DL+      L   +    +   +   
Sbjct: 339  ---------LYSAKLGISERFAQQKQQKNVLTPDDLLTTLASALNANN--ETLPKAVATR 387

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFV----GKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                LIDE QDT  +Q+ +   + +  +     G +T  +  +L  +GD KQ+IY+F GA
Sbjct: 388  FPVALIDEFQDTDPLQFAIFSGIYQGRYSFEQQGVDTTENKLSLLMIGDPKQAIYAFRGA 447

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +    +  +   Q              L  ++RS+A+++  V+ +FS   +         
Sbjct: 448  DIHTYIEARNHTQAHY----------HLDTNYRSSANMVAGVNHLFSQHHDPFISQSIPF 497

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             +++  SS  G+              +      +    S  + L + ++  +LA   A  
Sbjct: 498  DSVKTPSSAKGKN-------LTEKTANPTALRLRLLSESAENGLNKTTARHLLAEDAAAE 550

Query: 353  ISNMI-GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I+ ++        +     + AKDI +LVR R +  ++        +   I  V   R  
Sbjct: 551  ITRLLTDAANGECHSPNGPLIAKDIAILVRDRNEAAVMKTAL----SKRHIGAVFLSRDS 606

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D L  +++  + R + + +D+ +    L + L  +S + I          + + E   
Sbjct: 607  VFDTLEAREMALILRSLANPKDERALRSALATALLGYSAEQIHAFNQDEEHRQLLLEQFF 666

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
                    +       +  L+ +A           +L +   +     +        L +
Sbjct: 667  NLHQVWQKR-----GIMPALLSLANSTK---LIDRLLHSASTQTDAQEQDATNGERRLTD 718

Query: 532  FLNFT--LRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGL 583
            F +    L+ +      +  L++  EQ           +    +  N V+I+T+H +KGL
Sbjct: 719  FRHLAELLQQKATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGL 778

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E PV F+        + +    M    + +      +W  +            +  K+ T
Sbjct: 779  EYPVCFVPFVSLARDNRRRPTPMLYHRTNDAGEQELVWDIEGTDEG------WERAKQET 832

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK---- 699
              E  RLLYV +TR      +   +++   K   +   ++            +       
Sbjct: 833  LAEDLRLLYVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGIGDSECDFVRIC 892

Query: 700  --LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK--------- 748
                      E I+ +      +  PL   + I Q++  + + ++  +P +         
Sbjct: 893  NAAQQLAQDVEAISIDKVPDDIDERPLPSSQDIAQILSAKTLTRQYSTPWRVGSYSGLVK 952

Query: 749  ------------------NDINEPYILN-PSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                               +      L+ P     + +  + +  +  +  N G  +H +
Sbjct: 953  NTSHGKAAPGADDEALGTLEYMAAQTLSIPDDPSHELQDGMLNRFNFERGANAGSFMHLV 1012

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------------- 836
            L+ I    +  R   +             +    L      +L  P+             
Sbjct: 1013 LEEI-DFTQADRDLPLQLPKAMLKYGIAPEWQTVLHTWYLDVLHAPLGLMPTTMSSTTVP 1071

Query: 837  ------------------------MTTAMSCDSYSEVSV--------------------- 851
                                    +      D+  E+                       
Sbjct: 1072 TTMPSTSAFENNSKTAKPEHPGLCLAKLSPQDTLVEMEFYLPLSELKDTELNALLQQFGY 1131

Query: 852  SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIA 902
               +       ++ G ID     Q   +I +YK++H             +     + +  
Sbjct: 1132 ESTLKFDDLKGMLKGFIDLTFEYQGKYYIADYKSNHLGDNINAYHQNALQSAITEHRYDL 1191

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1192 QYILYSLALHR 1202


>gi|289207283|ref|YP_003459349.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288942914|gb|ADC70613.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 735

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 96/582 (16%), Positives = 186/582 (31%), Gaps = 125/582 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++A ++  V+DF +L++ + +LL+       +         H+L+DE QDT+ I
Sbjct: 172 RIYTTYQQACERAGVVDFAELMLRSLELLRDNKA---LLEHYRTRFRHVLVDEFQDTNDI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L  D             +FAVGD+ QSIY + GA  + +   ++         
Sbjct: 229 QYAWLRLLAGDSP-----------VFAVGDDDQSIYGWRGARIENIQHFQQDYP------ 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RS+A+IL   + +        G                      +LW
Sbjct: 272 --GTQVVRLEQNYRSSANILNAANALIRHNAGRLGK---------------------ELW 308

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              +  +   +       AR IA TI+  +    +         
Sbjct: 309 -------TEDKEGAPVRLYTALNEQEE-------ARFIAETIARHVDEGGL--------- 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             ++  VL R    + ++           ++           +   I+D +A  R   + 
Sbjct: 346 -YRECAVLYRSNAQSRVLEETFIA----RRMPYRVYGGLRFFERQEIRDALAYLRLAGNG 400

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHV 484
           +DD +F+ ++  P     E  +  +            +  T             +     
Sbjct: 401 DDDAAFLRVVNQPPRGIGEKTLEGLRQAAQAADTSLLQAATHAVDADALPGRARNAVAGF 460

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-- 539
           ++ +  L          D     +   + R+ +    G      ++ LDE +        
Sbjct: 461 VQLVRTLQQELPRQPLADQVEQAIERAQLREHYKKEKGERGEARLENLDELVGAARAFDM 520

Query: 540 ------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 E+   + L E ++                 + V++MT+H+AKGLE P+VFL   
Sbjct: 521 ESTAESEEGEGNRLTEFLAHAALEAGEGAADPHE--DAVQMMTLHSAKGLEFPLVFLTGM 578

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F +                                       +    EE  RL YV
Sbjct: 579 EEGLFPN----------------------------------ARSLEEPGRLEEERRLAYV 604

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           GMTRA  +L +          + +       + +   +   V
Sbjct: 605 GMTRAEKELYLIHAETRRLYGRESYNVASRFINEIPEDALEV 646


>gi|188025634|ref|ZP_02959292.2| hypothetical protein PROSTU_01128 [Providencia stuartii ATCC 25827]
 gi|188022554|gb|EDU60594.1| hypothetical protein PROSTU_01128 [Providencia stuartii ATCC 25827]
          Length = 1202

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 133/892 (14%), Positives = 276/892 (30%), Gaps = 147/892 (16%)

Query: 106  EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
            E   + D   +  +    L        +  +    K     + F+DL+   ++ LKK+  
Sbjct: 313  EVFALIDELLSQSLTIKDLIIPVAITEVRQNIAREKHSRGEMGFDDLLTRLDNALKKQG- 371

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              ++   I Q     +IDE QDT   Q+ + + +  +             L  +GD KQ+
Sbjct: 372  GDYLAKAISQRFPVAMIDEFQDTDPQQYRIFQRIYHEV--------ENSALLFIGDPKQA 423

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY+F GA+    +  K+      T          L  + RS+  ++  V+++FS  E   
Sbjct: 424  IYAFRGADIFTYIAAKKQVSAHYT----------LETNHRSSEQMVEAVNRIFSHCEKPF 473

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
               +     +   +   G+          + +H  Q       W    +++        +
Sbjct: 474  IFEQIPFNPVNFAAKNAGK----------ILKHHGQAVKALTFWQIDAEAVSIADYEQTM 523

Query: 346  ARRIAYTISNMIGTD------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            A + A  IS  +            S+GK+  + A DI VLVR R++  LI      L   
Sbjct: 524  ASQCAAQISQWLQGGAEGTSLFQHSDGKQHPVSAADITVLVRSRREATLIRDALNQL--- 580

Query: 400  YKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I  V  ++R  +      +DL+ + + +LS E +      L +     +  +I  +  
Sbjct: 581  -GIPSVFLSNRESVFATQEARDLLWILQAVLSPEKERILRSALATGTLGLNAKEIDALNY 639

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                 E + +   ++A       + V+  +  L+              +L A +G ++ +
Sbjct: 640  DEKAWEALVDEFSQYALIWRK--RGVLPMLRVLMAERH------IAESLLSAVEGERRLM 691

Query: 519  SRFGNEVIDVLDEFL---NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L   +  L  E      L + I+  +      +    ++ + V+I 
Sbjct: 692  DLM------HIGELLQEMSLQLEGEHTLVRWLTQQIAHPDHQSNAQQMRLESDKHLVQIS 745

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE  +V+L    + +   K +                          +   + 
Sbjct: 746  TIHKSKGLEYKIVWLPFASNFLPQSKALYHDRENYGT-------------HLDLDDSEEN 792

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSF 689
            +    +    E  RLLYV +TRA          II  +   S E   +      ++    
Sbjct: 793  VALADEERLAEDLRLLYVALTRAIYHCSVGIAPIIKGNRKKSGETDLHLSALGYLIQKGE 852

Query: 690  HND-------------------------ERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
              D                                  ++ +        +  ++   T  
Sbjct: 853  AGDFSLLNKGLAELAGTAISVERIEYTESISMSFDQDDNESLSARDITRFFDYYWRVTSY 912

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS--DNQTFNR 782
                                  +   +     +  S   T  + +  +L      +    
Sbjct: 913  SGLSYSSGHSGSGNEQAISAEQLATSLAPKIDVEASLDATLPEIDEFTLTPHLFPRGTAP 972

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------ 836
            G  +H+L++ +    E   +  +          +  K    L   +  +++ P+      
Sbjct: 973  GTFLHELMEEMDFSQEIPLEWLVEKL---QGAGFDTKWADMLQAWLAAIVDAPLADDGLC 1029

Query: 837  MTTAMSCDSYSEVSVSGKIN--------------------------CPKKDIIISGRIDQ 870
            ++     D   E+     I+                            K   I+ G ID 
Sbjct: 1030 LSALAPQDMLDELQFYLPIDNLLQAEDVDRITHRYDPLSAACPPLNFEKVQGILKGFIDL 1089

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
              + +   ++ +YK+++                 I + +  Q  +Y   L  
Sbjct: 1090 TFLWKGKFYLLDYKSNYLGDDAASYTQSAMAEAMIDHRYDLQYQLYSLALHR 1141


>gi|257790997|ref|YP_003181603.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
 gi|257474894|gb|ACV55214.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
          Length = 1165

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 134/891 (15%), Positives = 255/891 (28%), Gaps = 123/891 (13%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            D+K ++K  Q    ++                + LA+ + A +E AK+  C LD +DL++
Sbjct: 275  DVKAEVKAYQAVHARVAQNVALALAHPLASELMALAREVTARFEGAKRAACKLDNDDLLV 334

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
             T D  ++      I  + ++    +++DE QDTS +Q ++I  L               
Sbjct: 335  RTLDAFER---CPDIAARYERRFKLVMVDEFQDTSQLQIDMIARLAGPRCAH-------- 383

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             L  VGD +QSIY F GA+       K+  +            +EL  +FRS  D+L+ V
Sbjct: 384  -LCTVGDAQQSIYRFRGADVNVYEAHKKAMRAD----EVGALYVELTKNFRSHGDVLSFV 438

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            D+VF                 +  S   G    + L   V                    
Sbjct: 439  DRVFEQSTVFGEAFMSLEPNEQRPSCYRGSAPRIDLVLSVQPAGRGTG------------ 486

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
             +    +    A  IA   + +                  D++VL+ K     +     R
Sbjct: 487  -VRTADAKRAGAEAIARRFAALREDGHA----------PGDMVVLLGKMSRAGMYAEALR 535

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                      V     +      ++ +      + +  +  +   +L S +   S DD+ 
Sbjct: 536  AE----GFECVVTGGSLFASAPEVRVVARFVEALANPANTAALFEVLTSDMMRLSADDLL 591

Query: 455  KI---------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
             +         C +R + +  +  +   A+    +  H ++        ++         
Sbjct: 592  VLTTEEDPETGCVRRRDLDRGFARLASRADGLPPRLAHAVRLFERARDESRTRPVATVVR 651

Query: 506  LILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              +       +       G      + + +    R E   +  L      L        +
Sbjct: 652  DAVVRSGWMARLEEEGAAGTARAANVLKAVRLVDRLETERHLGLASTARALADELAVGLK 711

Query: 564  AHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGS----------------------- 595
                    A  + V+IMT+H +KGLE PVV L D                          
Sbjct: 712  EAPGALSGAGGDVVKIMTIHASKGLEFPVVALADFADARAGSGKLLVETCGAIARASLAP 771

Query: 596  ----QVFSHKHIKKMHIMPSLNDDPGIPIWIPQ---------------SKSRNNIVSDLI 636
                + F     +         +D    +   +               S ++    + L 
Sbjct: 772  AASLEAFPQLAKRSGAAAAGDGEDDADLLAARRLVEGEDGPACALGASSCTQAAYRAQLA 831

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY----DMVYDSFHND 692
            +        E  R LYVG+TRAS+ L++   +   +  K                   + 
Sbjct: 832  RRAADEELAEARRKLYVGLTRASEALVVAMDAKAPSAGKPPAYAPLVDDIRSALCGDGDF 891

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP------ 746
                            +         P            +L     +     S       
Sbjct: 892  PEGVAELPYGGTAPARFERILVQPPEPRAEEGVEPAPEPRLFFVPVVDDASRSTLFAGGL 951

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
             ++D      + P+ +       +      ++  + G   H+  Q+   +   +      
Sbjct: 952  ARDDAFSYSSIAPNPLPAPADEGVPFAADADKATDLGSAFHRAAQL--AVETGRVPGAAR 1009

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EVSVSGKINCPKKDIIIS 865
                  A      +   L  +  R   +      +       EV     I+    D  + 
Sbjct: 1010 LGVLSEAYALSTGQRARLADACERWFSSATYAETLQWGLRRAEVPFFVPIS----DAFVE 1065

Query: 866  GRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            G ID +             + +YKT     +  E +   H+ Q   Y   L
Sbjct: 1066 GEIDLLCTDDAQLAGARALVVDYKTGGSDGEAPEALRSKHLLQAQCYAYAL 1116


>gi|329945395|ref|ZP_08293158.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529017|gb|EGF55948.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 974

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 116/835 (13%), Positives = 220/835 (26%), Gaps = 169/835 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  +      +   +      A  L+         +  
Sbjct: 180 AAAEMRERVTALVGPAGERMWVSTFHSACVRILRREHE-----AAGLRSTFSIYDAADS- 233

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           + L +  + +     K    +    +  DLK +L          +               
Sbjct: 234 TRLITLIVRELGIDPKRFTPKTFANRISDLKNEL------ITPAQFAERAVTSNPLERHL 287

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y E       LDF+D+I+ T  LL+ R     +     +   HIL+DE Q
Sbjct: 288 ----AEVYRAYAERLSAANALDFDDIIMRTVTLLQTRPA---VAEMYRRRFRHILVDEYQ 340

Query: 187 DTSLIQWEVIRSLTEDF-FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           DT+  Q+ ++R L       G  +   P  L  VGD  QSIY+F GA  + +   +    
Sbjct: 341 DTNHAQYVLVRELVGGPGTSGAGSALPPGELTVVGDSDQSIYAFRGATIRNIEEFEEDYP 400

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I L  ++RST +IL+  + V S     +  +                 
Sbjct: 401 A--------ARTILLEQNYRSTQNILSAANAVISRNSGRREKN----------------- 435

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW        +  +    +            S    AR I+  I  +         
Sbjct: 436 ----LW-------TAAGDGAPITGYVA-------DSEHDEARWISQEIDRLSDE------ 471

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                +  +DI V  R    +  +                        D   IKD +A  
Sbjct: 472 ---HGVHPRDIAVFYRTNAQSRALEEAF----MRAGQPYKVIGGTRFYDRREIKDAIAYL 524

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK---- 480
           R + + +DD++   +L  P     +     +       + +  + +   A          
Sbjct: 525 RAVDNPDDDVNLRRILNVPKRGLGDKAEGALAEHAARYSVSFGQAVADAAGAPREAQADE 584

Query: 481 ---------------------------------FQHVIKYIHELIHIAQFCS-PHDFFTL 506
                                             +   + +  L H+        D    
Sbjct: 585 TGVAGEPDGLAPSVTEAGEPPEVEGLTTRARNQVRGFHELLTTLRHMVTAGDGVADILDS 644

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYP---- 558
            L A     +  +    +    ++ L E  +     +  +    L + +  +        
Sbjct: 645 ALDASGYLAELRASDDPQDATRVENLAELHSVASDFQAANPDGTLADFLERVSLVADSDQ 704

Query: 559 -------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                         +    ++ +MTVHTAKGLE P+VF+       F H          +
Sbjct: 705 LPPSADLEDEDARRAEEQGQITLMTVHTAKGLEFPIVFVTGMEDGTFPHTRSLAEETELA 764

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                                 L YV +TRA ++L + + +  S
Sbjct: 765 EERR----------------------------------LAYVALTRARERLYLTRAAVRS 790

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
               +N       + D        K++  +    +     +  S          R     
Sbjct: 791 AWGAANAMPASRFLDDVPAETIDWKRLASSMEALRGGGTGWGSSWGEGGFGSGGRRSGGS 850

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR-GLI 785
           +                             ++T      +   +  +   + G  
Sbjct: 851 RQDSYSDDDDF---APPVGGGAKRSGKLGRVETAQDRAAKRASARLEARGKQGTA 902


>gi|56477159|ref|YP_158748.1| hypothetical protein ebA3053 [Aromatoleum aromaticum EbN1]
 gi|56313202|emb|CAI07847.1| similar to ATP-dependent DNA helicase,putative replication protein
           [Aromatoleum aromaticum EbN1]
          Length = 660

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 102/553 (18%), Positives = 189/553 (34%), Gaps = 117/553 (21%)

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            YE   +    +DF+DLI     L  +      +R +   ++ ++L+DE QDT+  Q+ +
Sbjct: 169 EYERTLRAYQAVDFDDLISLPVRLFDEHPE---VRERWQNKLRYLLVDEYQDTNRAQYTL 225

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           +R L            +     AVGD+ Q+IY++ GA+ + +   ++   K         
Sbjct: 226 LRHLAG----------ARGAFTAVGDDDQAIYAWRGADVENLKLLQQDYPK--------L 267

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  ILT  + + +  E        S                        
Sbjct: 268 KVIKLEQNYRSSKRILTAANTLIANNEKLFEKRLWSEH---------------------- 305

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    +Q + T+  D       A   A  +A  IS          +  +   +  D
Sbjct: 306 ------GAGEQVTVTACRD-------AEHEAEWVASKISA---------HKFEHRTKFSD 343

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             VL R      LI    R    + KI  V +      D   I+DL+A  R +++++DDL
Sbjct: 344 YAVLYRGNHQARLIEQQLR----NQKIPYVISGGQSFFDKAEIRDLIAYLRLLMNEDDDL 399

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+  + +P        +  +         +++    +       +   + + Q    +I
Sbjct: 400 AFIRAITTPRRGIGAGTLEALGSYAGRRHVSLFAATFEEGAAQALSARQLEQVQEFGNFI 459

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLDEFLNFTLRNEQNSY 544
           + L + A           +L A +              +     + +F+ +  R      
Sbjct: 460 NRLQYRATREPASRLLEDLLAAIRYEAWLFEHLDPREAESKWSNVRDFVGWLGRKGDEDG 519

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            +L EL   +       K    +  + V++ T+H +KGLE   V LV     +  H+   
Sbjct: 520 KNLIELTQTIALISMLDKND--SEFDGVQLATLHASKGLEFKHVLLVGVEEGLLPHQSSI 577

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                               +   EE  RL+YVG+TRA   L I
Sbjct: 578 D-----------------------------------EDKIEEERRLMYVGITRAQRSLNI 602

Query: 665 CKHSNTSNEKKSN 677
                    K++ 
Sbjct: 603 TWCERRKAGKEAR 615


>gi|300714779|ref|YP_003739582.1| ATP-dependent DNA helicase rep [Erwinia billingiae Eb661]
 gi|299060615|emb|CAX57722.1| ATP-dependent DNA helicase rep [Erwinia billingiae Eb661]
          Length = 673

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 104/657 (15%), Positives = 214/657 (32%), Gaps = 121/657 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K++  + +      L++ +    +    + D         S      L  +   
Sbjct: 112 DQLALLKDLTEEWLENDKTLLQQLISTISNWKNDLMDPSRAAAGAVSERD--KLFAHCYG 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K   VLDF+DLI+    L ++      +  +  Q I ++L+DE QDT+  Q+E+
Sbjct: 170 LYDKHLKSCNVLDFDDLILLPTLLFQRN---QEVLERWQQRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++                 
Sbjct: 227 VKLLVG----------ARARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST  IL   + + +   +       S                        
Sbjct: 269 QVIKLEQNYRSTERILKAANILIANNPHVFEKRLFS------------------------ 304

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                      E        +   ++    A R   TI  +I    I         Q KD
Sbjct: 305 -----------ELGYGAELKVVTANNEDHEAER---TIGELIAHHFI------NKTQYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + +   +        +I    +          IKDL+A  R + +  DD 
Sbjct: 345 YAILYRGNHQSRVFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPNDDS 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++            +  G+   Q    ++
Sbjct: 401 AFMRIVNTPRREIGSATLQKLGEWAMQRNKSLFTASFDMGLEQTLSGRGLESLQRFTFWL 460

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQ--- 541
            E+  +A+        D    I       +   S    E  +  ++    +     +   
Sbjct: 461 QEVAQLAEREPVAAVRDLIRGIDYESWLFETSASPKAAEMRMKNVNTLFQWMTEMLEGSD 520

Query: 542 -NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +     + ++V++MT+H +KGLE P V+LV     +  H
Sbjct: 521 IDEAMTLTQVVTRFTLRDMMERGESEEDMDQVQLMTLHASKGLEFPYVYLVGMEEGLLPH 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       ++  EE  RL YVG+TRA  
Sbjct: 581 QSSID-----------------------------------ENNVEEERRLAYVGITRARK 605

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           +L            ++ +      + +   +D + +  +   S  +          +
Sbjct: 606 ELTFTLCRERRQYGETIRPEPSRFLMELPQDDLKWESERKIVSAEERMQTGQSRVAN 662


>gi|239995612|ref|ZP_04716136.1| exodeoxyribonuclease V, beta subunit [Alteromonas macleodii ATCC
            27126]
          Length = 1321

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 145/1045 (13%), Positives = 308/1045 (29%), Gaps = 187/1045 (17%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            K +   + + S   + K L          + + +  +         + A  L+   ++  
Sbjct: 241  KKQLDEAPHTSLAYV-KSLLQNVEDNEGLLVEQLIKTPAHKKERPQELA-ALKAWLRSCV 298

Query: 62   IEERF---SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
             E+ +      +  F+      + +   +EI     D    LKK+  E  K   +   +K
Sbjct: 299  DEQSYYLPPPEAEAFVKGNRYARNSSGVKEILTPIKDFAVTLKKAFGEKDKALSKVPVFK 358

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA--WIRYKIDQE 176
            +       +    ++ +  E+ KK+  V+DF+DLI     +L    V     +  ++ ++
Sbjct: 359  LV------VEAIAFIKSRVEKQKKQLGVIDFDDLI----RMLADEVVKPNNTLVPELRKK 408

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
                LIDE QDT   Q+ ++ ++  +       +++   L  +GD KQ+IY F G +   
Sbjct: 409  FPVALIDEFQDTDAKQYAILDAVYPNL-----ENANESALLMIGDPKQAIYRFRGGDIFT 463

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-I 295
             L+  R          Q      +  ++RS   ++   +++F     A     D     I
Sbjct: 464  YLKAGR----------QADYRWVMNTNWRSVEGMVKAYNRLFYGAPVASNKPADVFGFNI 513

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE------------------SWTSYFDSLP 337
            ++                +                                     D   
Sbjct: 514  KYNPVEFTPKAAAAKTPLIDPAEQDNVMKSAVMKSGVMKSVVTKRSAMNYVSMCLDDKEN 573

Query: 338  QESSASILARRIAYTISNMIGTDTIF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                   +A+ IA  I  ++       +NG    ++ +DI +LV+ R +   I  + +  
Sbjct: 574  AHIMRRKMAQWIAQEIYRLLNEAHFQTANGGTAPVKPQDIAILVKDRTEAGAIKSVLQ-- 631

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                   V  +DR  L      KD++ L   I    D       L SPL+ +S   + ++
Sbjct: 632  -QKGLACVYLSDRSNLFASAEAKDVLRLLNGIWHANDTSKVASSLASPLWGYSAQTLIEL 690

Query: 457  CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                 + +      +  +   +   +  +  +  L+  +      D     L   +    
Sbjct: 691  LYHEDDAQWDAAIDKVLSLRDMWLQKGCMSVLLYLMQDSYQ-PHADSVERALTNYQ---- 745

Query: 517  FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRI 574
                        L E L       Q     L  L  ++   +    +     ++   +R+
Sbjct: 746  -----------HLAEVLEKASTTHQRPEQLLDWLNKQIHKPESDEELTLRLESDSQLIRL 794

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            +T H +KGLE P+VF+        + K+      + +  D+          + +      
Sbjct: 795  ITQHGSKGLEYPIVFVPFATGYRDAAKNGNTTSQIFTYYDEE-----KQDLQMQLGQTPQ 849

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLII----------CKHSNTSNEKKSNQRTWYDM 684
             I  ++  ++ E  RL YV +TRA+ +  +             +             +  
Sbjct: 850  AIARVQSESEAEDMRLAYVAVTRAAHRCYMGVVPLTNNERSALARALGVGGDGSNNDWSS 909

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL-------------------- 724
            V +    +E      +     ++ +  +E     P+ T L                    
Sbjct: 910  VLNRVAEEEASHASHIDGDEFEEVYTGFEQEDELPQLTALQFTGTASEEWRLYSFSAMSR 969

Query: 725  ----------EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST----------IDT 764
                      ER    +     + + + L S           +  S            D 
Sbjct: 970  LTTVGANQSVERGTAAESGATTEPLGQTLPSVPVLQTIRDEEVYASDPLMGEMGSIDADI 1029

Query: 765  KGKTNLESLLSD-------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                 +ES +S         +  + G ++H +L+                   +      
Sbjct: 1030 NSSAGIESTVSKSDLRFTLEKGASAGNLLHDILEH-SDFSAPDWGETGKELVNRFG--LD 1086

Query: 818  AKEYKNLLLSITRLLENP---------------------------------MMTTAMSCD 844
             K    L   +   L+ P                                  +   ++  
Sbjct: 1087 EKRTPLLYEWLEEALQTPLYPNMQLSMSDLPLVQTLREAEFYFPMNDTQWTQLREVLATH 1146

Query: 845  SYS-------EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT----HHHVPQEI 893
              +       E+  + ++   K   ++ G ID I       ++ +YK+            
Sbjct: 1147 RQNVADVIGGEMETAPQLITAKLQGMMHGFIDLIFEHDGQFYVADYKSTWLGDTLDSYTP 1206

Query: 894  EHIPYT-----HIAQLSIYEKILKD 913
              + +      +  Q  IY   L  
Sbjct: 1207 TALFHNNQHHLYDLQYLIYCLALHR 1231


>gi|66043346|ref|YP_233187.1| ATP-dependent DNA helicase RepA [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254053|gb|AAY35149.1| ATP-dependent DNA helicase RepA [Pseudomonas syringae pv. syringae
           B728a]
 gi|330970406|gb|EGH70472.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 669

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/646 (15%), Positives = 211/646 (32%), Gaps = 125/646 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   K    +DF
Sbjct: 129 DDGVDEIKNMIGSWKNDLILPAEALENARNPKE-----QTAAIVYTHYQRTLKAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILLPVKLFQEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 233 --TRHQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLISNNPHAFEK---------------------QLWSEMGHGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCRNEDAEAERVAMEILTLH---------LRTDRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    + Q   +++  +        P  
Sbjct: 415 STTLEKLGNYATERKVSMYAATDEIGLGEHLDSRFTDRLQRFKRWMDGVRQQCAQNDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              +E      +  +   +      L  ++    +++E I +L
Sbjct: 475 ALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKL 534

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++    +    V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +         + +   +D   +    T +  K        +    
Sbjct: 620 GEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 665


>gi|254516482|ref|ZP_05128541.1| putative UvrD/REP helicase [gamma proteobacterium NOR5-3]
 gi|219674905|gb|EED31272.1| putative UvrD/REP helicase [gamma proteobacterium NOR5-3]
          Length = 1055

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 135/959 (14%), Positives = 284/959 (29%), Gaps = 127/959 (13%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
               +   + + L       +  I+     +  TG    L         +      E  SL
Sbjct: 189  PTVTDRDLDRQLLNAIEQALDGIDTDTDGTKVTGKYVSLITGVRAALYNDRATWPEWLSL 248

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
                         K +   +    +  + + +     +  K+ +    + +     ++  
Sbjct: 249  ------------SKEMPGAKSKPYAEPIAD-IAIDYAKHPKLHEDIRFFAV-----SAFE 290

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            +A    + Y+  K +  ++DF D       LL        +R  + +E+  +++DE QDT
Sbjct: 291  IAADSLSAYQLLKTQKGLIDFVDQEQRLYQLLDHP----TVRETLKEELQLLMVDEFQDT 346

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S IQ  +   L++              +  VGD KQSIY F G++P  +    +      
Sbjct: 347  SPIQLALFLKLSQLAEQ----------VIWVGDIKQSIYGFRGSDPTLMAAVVKRVTDEG 396

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                       L  S+RST +++   + +F+       L  +  T    R S       V
Sbjct: 397  NAPE------ILENSWRSTPELVAYTNNLFAPAFT-DSLRPEQVTLKPARKSFTDNP-AV 448

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK- 367
             LW    S  + +                        AR +A  +++++ +     +   
Sbjct: 449  TLWRLQESNKEKR------------------------ARALAVGVTSLLESKPTVIDKDS 484

Query: 368  --KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
               R     D+ +L R   +   +       K   +       R  L         +A  
Sbjct: 485  QLPRTANYSDVAILCRTHTNLDAVATALSEAKLPIRYK-----RPGLLATPEGCLALACL 539

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
            R ++   D L+   +L        ++ I +      +T+       +    G       I
Sbjct: 540  RRLIDPLDTLASAEILSLSECESPDNWIAQRIAYLEDTDQKPHQWLEDDETGP------I 593

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-----ISRFGNEVIDVLDEFLNFTLRN- 539
              +        F +P +   L + A   RQ         +     ++ L   L       
Sbjct: 594  AALKAQRIRLPFLTPVETLRLAIDAGNVRQSVFRWGPTEQRSQHRLNNLAALLGHAEEYM 653

Query: 540  ----EQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 QN  ++   L+  L          +A   + N ++++T H AKGLE P V  +D 
Sbjct: 654  NQCSSQNQPATAAGLVLWLYQLAQAEQDTQATGGSENAIQLVTHHGAKGLEWPFVIAMDL 713

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK--------------SRNNIVSDLIKHL 639
             +++        +   P   D                            +   SD  +  
Sbjct: 714  DAKLKPRLWGLTVLPSPHAIDLDNPLANRTLRYWPTFAGLQSAKISLLDDIAASDEGELA 773

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                 +E  RLLYV +TR  D LI+  + N  + +       +     +       + ++
Sbjct: 774  MAQELQEAKRLLYVSLTRPRDGLILTMNKNDEDGE-------WMNTLGADWMLPTTETLE 826

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            L +       +     +         R   +              SP     N    +  
Sbjct: 827  LPDGSTIPSAVIELVESEAEITLTPYRPTWLSTTASLVGKLPLRLSPSSIPPNPSATIG- 885

Query: 760  STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
               +         +  +      G  +H +      +         T    ++  +    
Sbjct: 886  ---EVIEFGERLEITGEYDPATLGSALHAV------IATTILGQNSTERVLQDHGVDSVI 936

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSY-SEVSVSGKINCPKKDIIISGRIDQISISQQNI 878
              +       RL+    +       +Y +E  +        +  I++G ID +  ++   
Sbjct: 937  SIEAADKCTNRLMNT--IEERFKPFAYYTEYPIHYT---TDEGQIVNGWIDLLLETEDGF 991

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
             + ++K       +   I   +  QL+ Y + +        +   + + +   +  + Q
Sbjct: 992  VLIDHKASPRAKSDWAEIALGYSGQLAAYARGVSQITNKPVVGQWIHFAATGGLVAVSQ 1050


>gi|87120740|ref|ZP_01076633.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MED121]
 gi|86163968|gb|EAQ65240.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MED121]
          Length = 682

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 110/613 (17%), Positives = 207/613 (33%), Gaps = 123/613 (20%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
              T  K I+ +E N+++ +         +    +           +      LA ++  
Sbjct: 124 DSLTLIKEILDKEFNEQTDEANFCQMTISNWKNDLTPPNEAVVNADTDEML--LAAHVYG 181

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+   +    +DF+DLI+    LL   D    +R +  +++ ++L+DE QDT+  Q+E+
Sbjct: 182 QYQRYLRAYNAVDFDDLILLPVSLLSGFDD---LRERWQRKVRYLLVDECQDTNNSQYEL 238

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IR L            + +    VGD+ QSIY++ GA P+ + R             +  
Sbjct: 239 IRILAG----------ARKCFTLVGDDDQSIYAWRGARPENLERLNSDY--------KGL 280

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +++L  ++RST +IL   + + +   +    S  S   +                    
Sbjct: 281 KLVKLEQNYRSTKNILKAANTLIANNPHVYDKSLWSDLGV-------------------- 320

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                             +   +         RIA  I +            +  I  KD
Sbjct: 321 --------GDPIRIMVTRNEESESD-------RIAAEIQSRH---------LRHDIPYKD 356

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R      LI    +     Y+I    N          IKDLM+  R +++ EDD 
Sbjct: 357 FAILYRGNHQARLIEIKLQA----YRIPYKMNGGTSFFARAEIKDLMSYLRLLVNPEDDN 412

Query: 436 SFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQHVIKYI 488
           +F+ ++  P        + K+         +++         ++     +   +    +I
Sbjct: 413 AFLRIINLPKREIGPATLEKVGNLATEHKVSLFAACELAELDERVTGRALKSLREFESWI 472

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLR----- 538
             L       SP      ++           +          I+ +   L    R     
Sbjct: 473 RALRRRLSGASPVPVIEQMIHDMNYYGWLQEQSSSPKAAERRIENVRFLLESIQRMMESA 532

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            E++  + L + IS+L       ++    + ++V+++T+H +KGLE P VFL+    ++ 
Sbjct: 533 WEEDPNAELDQAISKLLLIDMLERQEEEEDEDKVQLLTLHASKGLEYPHVFLIGCEEELL 592

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                                      ++    EE  RL YVG+TRA
Sbjct: 593 PH-----------------------------------RNSIENDDIEEERRLAYVGITRA 617

Query: 659 SDQLIICKHSNTS 671
              L I   S   
Sbjct: 618 KRTLCITLASKRR 630


>gi|311693105|gb|ADP95978.1| DNA helicase, ATP-dependent, RepA type [marine bacterium HP15]
          Length = 672

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 99/664 (14%), Positives = 218/664 (32%), Gaps = 134/664 (20%)

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                E+  +LL    L           + E   +  D++  +   ++      +  +  
Sbjct: 107 SIFDAEDAKALLQDLML--------REASAEAGDELNDIQMTISSWKNAMRGPAEALSKA 158

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              +           +   Y E  K    +DF+DLI+    L +       +  K  ++I
Sbjct: 159 ADEREQR-----IAIIYKKYNEYLKAYNAVDFDDLILLPVMLFRSNPD---VLAKWRRKI 210

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            ++L+DE QDT++ Q+E+++ L  +                VGD+ QSIY++ GA P+ +
Sbjct: 211 RYMLVDEYQDTNVCQYELVKQLVAERAA----------FTVVGDDDQSIYAWRGARPENL 260

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            + K               I++L  ++RSTA IL   + V +   +    +  S  TI  
Sbjct: 261 AQLKEDFP--------SLKIVKLEQNYRSTARILRSANTVIANNPHVFEKALWSDHTI-- 310

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                                      ++       +   +         R+A  I    
Sbjct: 311 --------------------------GEEIRIVRCRNEDAETD-------RVATEI---- 333

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                     K+ +  +D  VL R      L+    +     Y+I    +          
Sbjct: 334 -----LDQKLKKGLDFRDFAVLYRGNHQARLLEMKLQA----YQIPYRISGGQSFFSKNE 384

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC 476
           IKD M+  R +++ +DD +F+ ++  P        + ++    R    ++++ +      
Sbjct: 385 IKDAMSYLRLLINPDDDAAFLRVVNVPRREIGPRTLEQLSHYARSRNVSLFKALGDMGAE 444

Query: 477 GI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEV 525
                    + +    ++          +P      +    +  +      G        
Sbjct: 445 THVTEKGLDRLRRFAHWVDATCERLHSENPIPVIKQLFTDIEYEEWLHQHSGTPKQAERR 504

Query: 526 IDVLDEFLNFTLRNEQNSYS-----SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
           ++ +   +    R   +         +++ I++L       +R    + ++V+++T+H +
Sbjct: 505 MENIWYLVESIQRMLDDGKGTADELGIEDAITKLILRDMMEQREEDDDSDKVQLLTLHAS 564

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE P VF++    ++  H                                      ++
Sbjct: 565 KGLEFPHVFIMGLEEEILPH-----------------------------------RSSIE 589

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           +   EE  RL+YVG+TRA + L +   +      +  +      + +    D + +    
Sbjct: 590 EGNIEEERRLMYVGITRARETLTLTYAATRKQYGEKLETIPSRFLDELPEEDLKWEGTGD 649

Query: 701 TNSI 704
            +  
Sbjct: 650 LDVE 653


>gi|312866177|ref|ZP_07726398.1| putative ATP-dependent nuclease subunit A [Streptococcus downei
           F0415]
 gi|311098581|gb|EFQ56804.1| putative ATP-dependent nuclease subunit A [Streptococcus downei
           F0415]
          Length = 771

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 139/795 (17%), Positives = 263/795 (33%), Gaps = 106/795 (13%)

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKR--ATNAGQKFSIIELPLSFRSTADILTVVD 275
            VGD KQSIY F  A+P     +     +         +  ++ L  +FRS  ++L   +
Sbjct: 1   MVGDVKQSIYRFRQADPNIFQAKFAAYDQIDNFQADKSQGLLVLLKENFRSHLEVLETSN 60

Query: 276 KVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            VFS   +     L  D +  ++  +++          + ++         ++       
Sbjct: 61  AVFSRLMDQDIGELVYDQSHFLKAGNAQKSSPIPENQTQVLIYDETQAEPDEETDIQDPG 120

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           D            R +A  I  +   +          +    I +LV  R          
Sbjct: 121 DI-----------RLVAQEIIRLHREE---------GVAFDQIALLVSARTR----NDQI 156

Query: 394 RFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                 Y I VV  D        L +  ++   R I +   D S V +LKSP+FNF ED 
Sbjct: 157 LSTLKTYGIPVVSEDTGGHYLQALEVMVMLETLRTINNPLQDQSLVALLKSPMFNFGEDL 216

Query: 453 IFKICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           + +I  Q                  +  Q   +    K +   + +      A+  S HD
Sbjct: 217 LTRIALQAKFGNFYDKLLLALDGTGDNPQVINSQSREKIEAFDQVLRSWRKFAKSSSLHD 276

Query: 503 FFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
               I   K       +   G +    L        + EQ+ +  L   I+ +++     
Sbjct: 277 LIWKIYEDKFYYDYVGALSDGQQRQANLFALTLRADQFEQSGFKGLPRFINMIDRTLAND 336

Query: 562 KRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
           K           + V+++T+H +KGLE P VF+++           KK  +         
Sbjct: 337 KDLADVEVALPKDAVQLLTIHQSKGLEFPYVFVLNLHKSFNKQDEQKKAVLNRECGLGIR 396

Query: 618 IPIWIPQSKSRNNIVSD-----------LIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
               + +   +                   + L ++   E  R LYV MTRA  +L +  
Sbjct: 397 YVANLAERFPQEQYQQVKLSFDTFPFILNQQALHRADLSEQMRKLYVAMTRAETRLYLVG 456

Query: 667 HSNTSNEKK-------------------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             +    K                    +N + W+  + +SF  D+   +++     +  
Sbjct: 457 QGSQEKLKGKYEDYRDQERLALAGREQWTNFQDWFLALKESFPEDDLSFELRFVGPEDLQ 516

Query: 708 EWIAYEWSTHHPENTPL--EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST---- 761
           +    E S     +      + + IKQ +D  +  ++L    +  IN P +  PS     
Sbjct: 517 DLSPLEASLPMDVDDQAHNRQSDNIKQALDALEAVEELNHRYQAAINLPTVRTPSQIKKF 576

Query: 762 -----------------IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
                            ++ K         S       G   H+L+Q +   P+    + 
Sbjct: 577 YQPVMEDQGLDIMEKRILEPKFDLPSFGKESRVTGAAIGSATHELMQRLPIRPDISLADL 636

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLEN-PMMTTAMSCDSY--SEVSVSGKINCPK-- 859
             +     A+  PA + +  L  + +   + P+    MS       E   +         
Sbjct: 637 REALKLVQAE--PAVKKRLKLDKLLKFFRHHPLGQEIMSQGDKLVREAPFAMLFEDRDSH 694

Query: 860 KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
           +D++I G +D       +I +F+YKT  +  Q+   +   +  Q+ +Y + L  S+    
Sbjct: 695 EDMVIRGIVDGYIRYADHIVLFDYKTDRY--QDPAQLVRRYKDQMDLYARALHKSFDELR 752

Query: 920 LVCLLIYVSEPKVFI 934
           +   LI +   +V +
Sbjct: 753 VDKYLILLGGDEVLV 767


>gi|261856567|ref|YP_003263850.1| exodeoxyribonuclease V subunit beta [Halothiobacillus neapolitanus
            c2]
 gi|261837036|gb|ACX96803.1| exodeoxyribonuclease V, beta subunit [Halothiobacillus neapolitanus
            c2]
          Length = 1259

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 141/1005 (14%), Positives = 287/1005 (28%), Gaps = 135/1005 (13%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
                    ++ +   +                +S    T + T+ K              
Sbjct: 238  AELDTQAQQAEQDARQAWSKHAETLKDAWLPIMSALSGTSHRTLSKLTDFSTLWDSLDLW 297

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
             +    L          P+     +++ +                   R       +   
Sbjct: 298  AQTGEPLPIDVFKFLTQPK---FNKKLERPFHPALAVFSAWPVAMEAARHGREQSAIRL- 353

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                   A ++    +   ++N  + F+D+++N +  L   +    +   I  +    +I
Sbjct: 354  ---LAHAAFWVRDRIDTVLQQNAEMGFDDILLNLDRALTGAE-GQQLADTIRTQFPVAMI 409

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT  +Q+ +   +      G+       T+  +GD KQSIY F GA+    L  + 
Sbjct: 410  DEFQDTDPLQYRIFDRVFRIGGNGEAA-GQAGTMILIGDPKQSIYRFRGADMFSYLAARE 468

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSS 300
              Q              L  ++RST +++  V+ VF   +          +         
Sbjct: 469  ATQ---------GRHYTLDANYRSTPELVAAVNYVFERADRQPSGAFGHKTDEGNPLPFI 519

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL-PQESSASILARRIAYTISNMIGT 359
            R+   G  +  ++     + Q  P    W    DSL         +A   A  I++ +  
Sbjct: 520  RVSARGKARRLQRRNEAGEWQPCPPLTGWALPRDSLLAAGHFVEQMAEHTAEAITSSLNA 579

Query: 360  DTIFS------NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI-SVVGNDRFIL 412
              +         G    ++ +DI +LV           + +       I SV  +DR  L
Sbjct: 580  AQVGDCAFFDAEGAMTALRPQDIAILVSTGDQAA----VLQQSLIRRGIKSVYLSDRHRL 635

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                   D       I   +        L S  F     ++  +           +    
Sbjct: 636  FATEEAADFHRWLLAIAEPQRQDRLRAALGSSSFARHWGELDAVRN---------DARLD 686

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                    +Q + ++   L  + Q    +     +L A         R G   +  L   
Sbjct: 687  EDTSRFMAYQRITRHQGILAAVYQLMHDYHIPARLLAAP-----LPDRSGERRLTNLLHL 741

Query: 533  LNFTLRNEQNSYSSLQELISELEQY----PPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             ++    EQ   + L  L+    Q         +     + + VRI+T+H+AKGL+ PVV
Sbjct: 742  ADWAQN-EQAQLAGLDALLQRYAQAVSDNEAEHELRLEQDEHLVRIITIHSAKGLQYPVV 800

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +L           +          +   G+ +             + I    ++   E  
Sbjct: 801  YLPFLPLIRPKEANKNSTATPWRTSTGRGMSL---------GEFPEAIAAEHEAQMTESV 851

Query: 649  RLLYVGMTRASD--QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE------------- 693
            RL+YV +TRA     L +      + ++ +   +    V     NDE             
Sbjct: 852  RLIYVALTRAESACTLALGPVKFGAGKQPNQHESGLGHVLRLQGNDEFIASFEAALTDLD 911

Query: 694  --RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP----- 746
                  I+   SI    ++A    +  P  T   R ++  ++     +   L        
Sbjct: 912  AQAGVTIEPPPSITHARFVAPVEDSLPPARTAKRRVDSHWRISSFSGLTHALHESDVAVP 971

Query: 747  --IKNDINEPYILNPSTIDTKGKTNLESLLSD----------NQTFNRGLIIHKLLQVIF 794
               K +     +    T++                        +    G ++H LL+   
Sbjct: 972  ETAKQEQLRDVLSQTGTVEESLDLPQTHRFDPQSLSARISHLPRGTTFGTLLHSLLERAG 1031

Query: 795  T--LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE-------NPMMTTAMSCDS 845
                 +     F  +   + A      +   L   + R+L        +  +        
Sbjct: 1032 EAGFNQSANFEFSLNLVRQLASTLTEDQQSTLAELVLRILTLSLVTTPSRRLADVSRYQI 1091

Query: 846  YSE--VSVSGKINCPKKDII---------------------ISGRIDQISISQQNIFIFE 882
              E  + V+         ++                     I G +D +  +    +I +
Sbjct: 1092 EQEFWLPVAQTQTSSIDALLCAHVHPGQMRPLLTAQYLEGQIKGFMDLVFEADGRFYILD 1151

Query: 883  YKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            YK++       ++ P           +  Q+ +Y   L     ++
Sbjct: 1152 YKSNWLGDSPEDYAPEHLVDAMLAARYDLQMVLYLTALHRHLQDR 1196


>gi|238789353|ref|ZP_04633139.1| ATP-dependent DNA helicase rep [Yersinia frederiksenii ATCC 33641]
 gi|238722496|gb|EEQ14150.1| ATP-dependent DNA helicase rep [Yersinia frederiksenii ATCC 33641]
          Length = 672

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 110/735 (14%), Positives = 232/735 (31%), Gaps = 136/735 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I  + +L +E         A  ++        +++  
Sbjct: 59  AAREMKERV-AQTLGRKEARGLMIATFHTLGLEIIKKEY--AALGMKSNFSLFDAQDQLG 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K++  + +      L++ + +  +    +        + +S     
Sbjct: 116 LL------------KDLTHKWLEDDKTLLQQLISQISNWKNDLLSPAAAAALARSERD-- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L  +    Y+   K   VLDF+DLI     LL+       +R +    + ++L+DE QD
Sbjct: 162 KLFVHCYGLYDAHLKACNVLDFDDLISLPTLLLQNN---LEVRERWQNRLRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L            S      VGD+ QSIYS+ GA P+ ++       + 
Sbjct: 219 TNTSQYQMVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +       S                
Sbjct: 268 -------LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS---------------- 304

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                              E        +   ++    A R+            + ++  
Sbjct: 305 -------------------ELEYGDELKVITANNEDHEAERVV---------GELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +  Q  D  +L R    + L       L    +I    +          IKDL+A  R 
Sbjct: 337 VKKTQYSDYAILYRGNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISK 480
           + +Q+DD +F+ ++ +P        I K+        ++++               G+  
Sbjct: 393 LTNQDDDSAFLRIVNTPKREIGSATIQKLGEWANVRNKSLFRASFDLGLGEHLKGRGLES 452

Query: 481 FQHVIKYIHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
            Q    ++  +I + +        D    I       +   S    E  +  ++   ++ 
Sbjct: 453 LQRFTHWMDGIIRLVEREPVAAVRDLIHGIDYESWLFETSPSPKAAEMRMKNVNLLFSWM 512

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E N   +L ++++         +       ++V++MT+H +KGLE P VFLV 
Sbjct: 513 TEMLEGSELNEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       +   +E  RL Y
Sbjct: 573 MEEGLLPHQSSID-----------------------------------EDNVDEERRLAY 597

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA  +L            +  +      + +   +D + +  +   S  +      
Sbjct: 598 VGITRAQRELFFTLCKERRQYGELIRPEPSRFLMELPQDDLQWENERKVVSPQERMQKGQ 657

Query: 713 EWSTHHPENTPLERE 727
               +        ++
Sbjct: 658 SHLANIRAQLAKAKK 672


>gi|291296725|ref|YP_003508123.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
 gi|290471684|gb|ADD29103.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
          Length = 920

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 141/957 (14%), Positives = 291/957 (30%), Gaps = 122/957 (12%)

Query: 7   LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQCIEE 64
           ++   S     +    +    +S I+ +++  +    P +        L         EE
Sbjct: 67  VASGGSRAAFQEAAREIAGATLSTIHGFMAQCLRLAAPLLHLDPDFSMLGDWEAQAIFEE 126

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK--- 121
            +  L                    +   P       +  +  + +  R +  ++F+   
Sbjct: 127 EWQTLRYL---------------AQDAHHPLFGLVSDELTEPLLHLFSRRSQAEVFEPAA 171

Query: 122 --STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             +    L + + + A YE       +L   +L     +L +       +  ++      
Sbjct: 172 GEANQHLLQVYQTVYAAYEARL-GANLLSPSELERKALELARNDRAMKRVLERV----RV 226

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QD + +Q     +L +     +           VGD KQSIY+F  A+     +
Sbjct: 227 LLVDEYQDVNPVQGAFFAALEQARLPIE----------IVGDPKQSIYAFRNADVSVFRK 276

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             R  +              L  S+R +  ++  ++ +                     +
Sbjct: 277 ALREGKSEPP----------LTHSYRHSRVLVRFLNGL---------------------T 305

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             + + G     E+       +    +         LP E      AR +A  ++ + G 
Sbjct: 306 GYLAKEGLGFGLEEAPPVEGVRPEQGRLEVHWVVGELPLEELRKQEARVLAGRLAALRG- 364

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      I+   + VLVR       +           +I  V        +   ++
Sbjct: 365 ----------PIEYSQMAVLVRSYGSVRFLEEALAE----AQIPYVLLQGRGYYERQEVR 410

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           DL    R  L     LS    L+SP    +E    K          +             
Sbjct: 411 DLYHALRAALDPR-GLSLAVFLRSPFGQHTEAGPLKPLELPQIEGVLRA--DDPLGRLAQ 467

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFLNFTLR 538
            +  V + + ++    +  +P +    ++ A     + +         + +D  L     
Sbjct: 468 HWPSVYERLRQIQAQVRLMAPLEVLKFLIRAPLMDGRPYHDFLEPRARENVDALL---FY 524

Query: 539 NEQNSYSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                  +L+ L+  LE             +   V+I+TVH AKGLE P+V + D     
Sbjct: 525 FAPRPPQNLEGLLERLELLSRQADAGDVPQSGEGVQILTVHQAKGLEWPLVAVFDL--GR 582

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
            +    + +++    N   G  +    +           + +K   +EE  RLLYV  +R
Sbjct: 583 MNVHRPQPLYLGQGPNGGDGGRLRRWVALPETPQFEAFRQQVKLQEEEESYRLLYVAASR 642

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A D L++   ++           W  ++             +    +    +        
Sbjct: 643 ARDTLLLTASASHGQ-----PEGWGKVLEAMNLGPASKPYHRPDFHLQTWPYQPAPPVRV 697

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
             +  PL+    +    + +  P     S +K    EP  L             E     
Sbjct: 698 LSQPAPLQPSPWVDARFEPEPFPPLFSPSALKRLEAEPLPL---------PDPEEGEAVP 748

Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
            +    G ++H  +           ++       +    +   E + ++  +  LLE+  
Sbjct: 749 GRARAIGTLVHYAIGQ--NWRPDNPQHLANLEAQEVMFPFGPDERRGIMAEVQALLEH-- 804

Query: 837 MTTAMSCDS---YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
               +         E      +  P    +  G ID++    Q  ++ +YKT        
Sbjct: 805 YQELLGRALPWPRDEDYPEFAVALPLGSTVWQGVIDRLYRVGQQWYLEDYKTDQ------ 858

Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
           E  P  ++ QL IY   ++ ++  +     L+Y+    V  + +  L  A  EI  K
Sbjct: 859 EMRPERYLVQLGIYLAAIRQAWQIEP-EVRLVYLRFGWVERLDKAILEAALGEIMPK 914


>gi|325286154|ref|YP_004261944.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
 gi|324321608|gb|ADY29073.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489]
          Length = 1039

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 128/861 (14%), Positives = 277/861 (32%), Gaps = 123/861 (14%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
             +   Q  I    +      +   L +  +       +   YK   + L  LT+   +  
Sbjct: 281  GENLEQGKIFKATVKNAPDHIAPMLLEIYNSVKNTIYQRAMYKNVYANLVPLTVLNEIQK 340

Query: 136  HYEEAKKKNCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                  K+   L    F  +I            + +I  ++ ++  H  +DE QDTS +Q
Sbjct: 341  EINAICKERDQLTLASFNAIISKEIK----NQPAPFIYERLGEKYRHYFVDEFQDTSELQ 396

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            W+ +  L  +     + +    +L  VGD KQ+IY + G + +   +  ++  K      
Sbjct: 397  WQNLIPLIGNALESLDDYGKKGSLLLVGDAKQAIYRWRGGKAE---QFIKLTNKEELPYV 453

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI--RHRSSRIGQVGTVQL 310
             +    ELP ++RS ++I+   +  F+I  N    +  +   +    +       G V L
Sbjct: 454  LEPKTTELPRNYRSYSEIINFNNNFFTITSNLLNNTAYADLYVSGNKQEINTKTGGLVTL 513

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                  + +   +                    +    +  TI+ +            + 
Sbjct: 514  SFIPNEKEEQDND--------------------LYCESVLETITALTSE---------KK 544

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               KDI +LVR    + ++       +    I V+ ++  +L     +  L+ L  +   
Sbjct: 545  YNYKDICILVRSNNHSYVLADFLTSKE----IPVISSESLLLKSSEKVSFLLNLLTYSTQ 600

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             +D  +   +L                    + E  +++IQK  N         ++    
Sbjct: 601  PKDKDTAYEIL---------------YFLAEKGEDTHQFIQKHLNSLEEFL---LQQYGF 642

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
             I   +  S  D F   +           +        L   ++  L  EQ    S Q  
Sbjct: 643  AIDKLKQLSVFDAFEKAIHQF--------KLAETSDAYLISLMDEVLDGEQKDGVSAQTF 694

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            ++  ++    +      N N V+IMTVH +KGLE P+V      S ++       + + P
Sbjct: 695  LTYWDKKKDKLSLKAPDNINAVQIMTVHKSKGLEFPIVIFPFANSFIYGKDEKIWLPVDP 754

Query: 611  SLNDDPGIPIWIPQSKSR--NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
               +     +   + +     ++ + L        + +   +LYV +TRA   L I    
Sbjct: 755  EQFNGFSEVLVTKKQEMEQYGDLAAKLFLDEHSKQELDAFNVLYVALTRAVKALYIISKK 814

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
              + + + +   +  +              +LT S    +                  EE
Sbjct: 815  ELNTKGEPSVNKYSGLFIKYLQQLGLWSDTQLTYSFGNLQI----------------AEE 858

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
            +  ++     I  +  +  +                  K+ +      +    +G +IH 
Sbjct: 859  STAKVEKLNHINYQYSTKDRPSFK-----------ILTKSGMLWETGRDVALEKGNLIHL 907

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD--SY 846
            LL  +      K  +   S   ++       +       +  ++E+P +           
Sbjct: 908  LLSYV---KTKKDVDKAISIVIRDGH-LTPLDVAVTKQKVLTIIEHPDLAKYYKEGNIVK 963

Query: 847  SEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
            +E  +        + +++  R D++ I +     + +YKT              +  Q++
Sbjct: 964  NEKDI-----ITAEGLLL--RPDRVVINTNNEATVIDYKTGTPNNS--------YHQQVN 1008

Query: 906  IYEKILKDSYPNKSLVCLLIY 926
             Y   L+     K +  +++Y
Sbjct: 1009 SYAYALEAM-NYKVVSKIIVY 1028


>gi|289677648|ref|ZP_06498538.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. syringae
           FF5]
 gi|330901055|gb|EGH32474.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 669

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/646 (15%), Positives = 211/646 (32%), Gaps = 125/646 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   K    +DF
Sbjct: 129 DDGVDEIKNMIGSWKNDLILPAEALENARNPKE-----QTAAIVYTHYQRTLKAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILLPVKLFQEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 233 --TRHQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLISNNPHAFEK---------------------QLWSEMGHGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCRNEDAEAERVAMEILTLH---------LRTDRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    + Q   +++  +        P  
Sbjct: 415 STTLEKLGNYATERKVSMYAATDEIGLGEHLDSRFTDRLQRFKRWMDGVRQQCAQNDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              +E      +  +   +      L  ++    +++E I +L
Sbjct: 475 ALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKL 534

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++    +    V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +         + +   +D   +    T +  K        +    
Sbjct: 620 GEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 665


>gi|254514374|ref|ZP_05126435.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3]
 gi|219676617|gb|EED32982.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3]
          Length = 1108

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 150/959 (15%), Positives = 298/959 (31%), Gaps = 146/959 (15%)

Query: 26   FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
               + +  Y++   E  +    + A  +   +++      +  +++  LT K   +K + 
Sbjct: 231  QLRARLEPYLNELAELMHYQAEQLATDIV-FAKSSENLNVWRAVAALLLTGKGDWRKTVN 289

Query: 86   T-----------QEINKKSPDLKEKLKKSQDE--FIKIRDRFNTYKMFKSTLASLTLAK- 131
                        +E  ++   L   L +  D      +R       + +       LA  
Sbjct: 290  KNNGFPTGSGEAKERKQQMLALLAALTEDADPALLSDLRQVLLLPDVEEEPQHWHVLAAL 349

Query: 132  -YLNAHYEEAK----KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              L            +++  +D   + +     L   D    I  ++D  I H+L+DE Q
Sbjct: 350  TRLLPRLGAQLLLVFQQSGEVDHAQIALAALTALGSDDEPTDIALRLDHAIEHLLVDEFQ 409

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            DTS +Q+E+IR LT  +      ++  PRTL  VGD  QSIY F  A     +R +    
Sbjct: 410  DTSSVQFELIRRLTRGWQDYNTENNQAPRTLLLVGDAMQSIYGFREANVGLFIRARSE-- 467

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      + ++L ++FRS   ++   +  F     A   ++      R  ++     
Sbjct: 468  ---GIGDLALTPLDLSVNFRSQQGLVEWTNSHFKAGFPATDDAQLGAVQYRSAAAARDPG 524

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               +L                           + ++ + +A         ++        
Sbjct: 525  PEPELAIF----------------------TGEGANEAEIAALCLKLEEGLVDD------ 556

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                  Q + I +L R R     +    R       I V   D   L     I+DL+ L 
Sbjct: 557  ------QVESIAILGRSRSQLRPVLAALRE----RGIEVAARDLDTLAQRPLIRDLLTLS 606

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV----------YEYIQKFAN 475
              +  + D  +++ +L+ P       D+  +         +          +  +   A 
Sbjct: 607  TVLCDRFDRYAWLALLRCPSIALDNADLLLMSMMCPTAADLSDPDFVASQEFARLSDTAR 666

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
              + + Q+V+++              +   L+L               E    L      
Sbjct: 667  QRVGQLQNVLQWADHYRDRLALRVWVEECWLLLHGAGALASEADIHDAERF--LQCLEQL 724

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             ++ +  +   L E +  L   P   +        +V++MT+H AKGLE   VF+     
Sbjct: 725  EMQQQTLNGRMLNEAMDTLYASPGDERC-------KVQVMTLHKAKGLEFDWVFIPALAK 777

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK----SRNNIVSDLIKHLKKSTQEEYNRLL 651
                      +     L       +   ++      R  +   L    K+    E  RL 
Sbjct: 778  NTAGQDRELLLWDEFVLPGSAPAFLLDIRADAEGGDRPRMYDYLKAQAKQKRDCEATRLF 837

Query: 652  YVGMTRASDQLI----ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            YVG TRA+D L     +         +     +   +++ +  +   V  +   ++I  +
Sbjct: 838  YVGCTRAADYLWLGATLSWDEAKEAHRPPGAGSLLSVIWPTIESQLDVSFVPADDAITTE 897

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
                Y      P      ++   + L                                  
Sbjct: 898  SLTGYRRLRDLPRIEATPQDALAQGLK--------------------------------- 924

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK-NFITSYCTKNAKLWPAKEYKNL-- 824
                 L  + Q    G  IH+ L+ +   P+  R  +       K A L    +  +L  
Sbjct: 925  -----LAENYQARAFGTAIHRCLEALVYRPQLPRSCDAALGALLKVALLEAGADSSSLSR 979

Query: 825  -----LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ--QN 877
                    + R+L +P     +S     E +    +    +       +D   + +    
Sbjct: 980  LQSEGAAMLDRVLADPFAAWMLS-GERHERAAELALTVGTETGTQQLILDYSFVDEARGE 1038

Query: 878  IFIFEYKTHHHVPQEIEH-----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
             ++ +YKT      E E         ++ AQLS Y   L + +  + + C L + +  K
Sbjct: 1039 RWVVDYKTSAPGEGESEEQFMANQLQSYSAQLSAYVLALAERFS-EPVRCALYFPALGK 1096


>gi|302135046|ref|ZP_07261036.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            NCPPB 1108]
          Length = 1230

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 124/1004 (12%), Positives = 275/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +  +  E          LT     +        +            +  +    
Sbjct: 272  EKLAAWAADETQEALDLGTGFTRLTPDGVAEAWKSDPPSHPAF--------AAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDGLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDGAL-HGAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEGNDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVESVNHVFTRAEQRPEGKGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA R A
Sbjct: 485  FLFRDEKGNQVPFADALAQGRKETLEVDGTALTALTVWHLESEQPVSGVVYRQQLASRCA 544

Query: 351  YTISNMIGTDTIFSNGK------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++        G       +R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFTAPGNAQRGLRPADIAILVRDGKEAQAVRSQLTA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++  +     
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQE----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWEQRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +            +++        LIK    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGTPLPLQFHDADG----------RAQISLQPTEALIKQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      ++       +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNANSSMLHRSALGYLLGGGTALPESADL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN--- 749
                +D           P   P +   +  +             +       +       
Sbjct: 877  KVWLRDLAEGCSAIALQPVPEPTDDSFSAPRNEASLVKLLVPKRRAAENWWIASYSALRI 936

Query: 750  -----DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILVSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  IFT-------LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                      L   + ++ +   C +          ++ L  +  + L          + 
Sbjct: 997  AGNEGFANTALDPVELESVVARRCNRRGWKGWIITLRDWLQQMLNMPLRLSPDSTPVALG 1056

Query: 839  TAMSCDSYS-EVSV---------------SGKINCPKKDI----------IISGRIDQIS 872
                 + Y  E+                   +                  +  G ID   
Sbjct: 1057 DLNQPNQYRVEMEFWFASTNVNVAQMDTLVRRFTHDNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +  +         +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGSDDDAYTDLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F  P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSASQGAYFTRPPRELIESLDLLFQGKP 1220


>gi|87123150|ref|ZP_01079001.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917]
 gi|86168870|gb|EAQ70126.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917]
          Length = 796

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 104/622 (16%), Positives = 199/622 (31%), Gaps = 99/622 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y +A   N      D        ++    +  +R    +   H+L+DE QD
Sbjct: 202 KLTADVYRRYRKALAANNA---LDFDDLLLLPVQLLQQNEQVRAYWHRRFRHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGK-NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  D    +   + S R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYELIKLLVTDGKDPQVYDNWSGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +A +   + ++++L  ++RSTA IL   + + +            T              
Sbjct: 319 KAPDDSTR-TMVKLEENYRSTATILEAANALIAHNSERIDKVLRPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  S T   D + +       A  + + +  M          
Sbjct: 365 ---------------GEGELISLTRCDDEIAE-------AEAVVHRLRMM--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ VL R    +  I          ++I  V        D   IKDL+A  R
Sbjct: 395 ANPELGWGDMAVLYRTNAQSRAIEESL----VRWRIPYVVVGGLRFYDRREIKDLLAYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  I ++    ++    ++      E ++        
Sbjct: 451 LLVNPADTVSLLRVINVPRRGIGKTTIQRLTDAANQLGIPLWDVVSDPEAVRSLGGRSAK 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + I  L       +P +    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCELIGGLKERIHDAAPSELIQTVMEQSGYVSELIADATDEAEERRRNLQELVNAA 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N    L+  ++          +      + V +MT+H++KGLE PVV LV    
Sbjct: 571 LQYQEENDEGDLEGFLASAALASDADSKD--TAADRVTLMTLHSSKGLEFPVVCLVGLEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +             +  +           E  
Sbjct: 655 TRAKERLFLSHASERRLWGGMREAAVPSVFLSELPEALVQGDVPRSGGAALRREQRLERL 714

Query: 716 THHPENTPLEREETIKQLMDEQ 737
           T    +              + 
Sbjct: 715 TRVDRDDARRAAPANAVRRRQA 736


>gi|291286461|ref|YP_003503277.1| exodeoxyribonuclease V, beta subunit [Denitrovibrio acetiphilus DSM
            12809]
 gi|290883621|gb|ADD67321.1| exodeoxyribonuclease V, beta subunit [Denitrovibrio acetiphilus DSM
            12809]
          Length = 1149

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 116/855 (13%), Positives = 261/855 (30%), Gaps = 120/855 (14%)

Query: 106  EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
             + K  +     ++F+STL    L  Y+    E  K+KN +  ++DLI    + + + + 
Sbjct: 313  WYDKEAEFRELSRLFESTLK-YKLCLYMEEVLETHKQKNNIQSYDDLITRMRNSVMENEG 371

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +   ++++ N  LIDE QDT   Q+++  ++   +          +  F +GD KQ+
Sbjct: 372  HGNMSISVNRKFNAALIDEFQDTDPHQYDIFNTVFGRY---------GKPFFMIGDPKQA 422

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IYSF GA+    L+              + +   L  +FRS  +++  V+  F       
Sbjct: 423  IYSFRGADVYVYLKAASE----------EGNQYTLTKNFRSAPELVDAVNSFFQRENAFM 472

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                +   ++          G  +L   V      +  P    W        +++    +
Sbjct: 473  EPRIEYIPSV---------GGHKELALTVA----EKPQPHMIVW------ETEKTKPEEI 513

Query: 346  ARRIAYTISNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A   A  IS ++  +    ++   + ++  DI VL R +K+  ++     + +    +  
Sbjct: 514  ALSTARHISELLNKSSYGSAHINGKAVKPSDIAVLCRNKKEMTMVKEALTYCR----VPA 569

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
            V +    +       +++ +   ++S          L S  F ++  +I+ I       +
Sbjct: 570  VVSGSENVFSSDEAVEMVNILSAVISPFSQSHIKTALASSAFGYTAKEIYHITETDQWDD 629

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E+            +        +       S    +  +     G ++        
Sbjct: 630  ITEEFRNYNDMI---SLRGFAPMFFHMA------SVRKLYKRLAKLPSGERKLT------ 674

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISEL-------EQYPPTIKRAHSANHNEVRIMTV 577
                L        + E N  ++ Q+++  +       E      +    ++ N V I+T+
Sbjct: 675  ---NLIHITELAQQFEANRKAAPQDILRWMKEKISNAEMRDEESELKMDSDENAVTIITI 731

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE  +V+         ++K                                + I+
Sbjct: 732  HKSKGLEYNIVYTPFLMFSRGNNKRPDYAKYHKEDKF-----------ILDVAGTDEAIE 780

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              ++  Q+E  R+ YV +TRA           T ++K +                     
Sbjct: 781  KTQQEEQQEKLRIAYVALTRAKSVCFTAWGEGTGHDKSALAYLINGEQSKFDSGRLHSFF 840

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
                 +I      A +           +      ++    +I         +        
Sbjct: 841  RGSNVAIKPLPDTAVQTYKGSEIQPTGKNRTFTSEITPPWQINSFSRLIHSSSSVRDTDQ 900

Query: 758  NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                 +T   +    + +  +    G  +H+ ++              T      A  + 
Sbjct: 901  FTMKDETSDSSGRLDIFTFPKGAKAGTCLHECMEETDFENFSALSVAETVEERLKAFSFD 960

Query: 818  AKEYKNLLLSITRLLENPM----MTTAMSCDSYSEVSV---------------------- 851
                  +  +I  +L   M    +      D   E+                        
Sbjct: 961  TDFTPAVTQNILTILNKDMHGTCLKDLKQGDYIHEMEFQIATKPFRPEPVSEIFRNSGQN 1020

Query: 852  -----SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH---HVPQ------EIEHIP 897
                 +  ++       ++G  D I   +   ++ ++K++H               E + 
Sbjct: 1021 DYADAASTLSFDAMQGFMNGFADLIFCQRGQYYVLDWKSNHLGMTPENYSMERMHAEMLG 1080

Query: 898  YTHIAQLSIYEKILK 912
              +  Q+ IY   L 
Sbjct: 1081 SHYYMQMHIYTLALH 1095


>gi|319426281|gb|ADV54355.1| exodeoxyribonuclease V, beta subunit [Shewanella putrefaciens 200]
          Length = 1256

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 131/955 (13%), Positives = 294/955 (30%), Gaps = 145/955 (15%)

Query: 63   EERFSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDE-FIKIRDRFNTYKMF 120
               F  L ++       P  K +    +++   +    +    +   +   ++       
Sbjct: 280  AAMFDALDNWLAYGNGLPPIKVLEDLSLSELKLNKGGVIPSVSEAPLLDHMEQLAALIKA 339

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                   +  + ++A + + K++  VL   DL+    D L        +   +       
Sbjct: 340  VKPAFLYSAKQGISARFAKQKQQQNVLTPNDLLTTLADALNAN--RQTLPKAVASRFPVA 397

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFV-------GKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            LIDE QDT  +Q+ +  S+ +             N      +L  +GD KQ+IY+F GA+
Sbjct: 398  LIDEFQDTDPLQFAIFSSIYQPHNAFNLPTDNHLNHAEKNLSLLMIGDPKQAIYAFRGAD 457

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                +  ++  +              L  ++RS+ +++  V+ +FS   +          
Sbjct: 458  IYTYIEARKATEAHY----------HLDTNYRSSTNMVAGVNHLFSRHPDPFISQSIPFD 507

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
            +++  SS           + +    ++    +    +   + L + ++   LA   A  I
Sbjct: 508  SVKTPSSAK--------HKILTEPSENPAALRVRLLSETENGLNKTTARHRLANDAAAEI 559

Query: 354  SNMIGTDTIFSNGKKR-VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            + ++ +            + AKDI +LVR R +      + +   +  +I  V   R  +
Sbjct: 560  TRLLTSAAHGECYTPNGPLMAKDIAILVRDRNEAA----VMKAALSQRQIGAVFLSRDSV 615

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
             D L  +++  + R + + +D+ +    L + L  ++ + I        + + + E    
Sbjct: 616  FDTLEAREMSLILRSLANPKDERALRSALATALLGYNAEQIHAFNQNEEQRQQLLEQFFD 675

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI----LGAKKGRQQFISRFGNEVIDV 528
                   +       +  L+ +A   S  +         L   + ++             
Sbjct: 676  LHTIWQKR-----GIMPALLSLANSTSLIERLLHAPQPKLDNNQEQETTYGERRLTDFRH 730

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKG 582
            L E L      +      +  L++  EQ           +    +  N V+I+T+H +KG
Sbjct: 731  LAELLQQ----KATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKG 786

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PV F+        + +    M             +W  +            +  ++ 
Sbjct: 787  LEYPVCFVPFVSLARDNRRRPTPMLYHKINQTHGQALVWDIEGTEEG------WEQFRQE 840

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK-----------------SNQRTWYDMV 685
            T  E  RLLYV +TR      +   +++   K                  ++    ++ +
Sbjct: 841  TLAEDLRLLYVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGITDADCDFNRI 900

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL-----EREETIKQLMDEQKIP 740
              +  N  +       + I ++  +    S+H    T        +  T  ++     + 
Sbjct: 901  SQAAQNLAQSIDAISIDKIPEETSLQTLPSSHDATQTLAPKTIHRQYSTPWRVGSYSGLV 960

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------------DNQTFNRGLIIHK 788
            K           +   L+        +  L+   S              +  N G  +H 
Sbjct: 961  KNTSHGKAAPGADDEALSVLEQGVASRDQLKIDNSLDPKPFGLNRFNFERGANAGSFMHL 1020

Query: 789  LLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM----------- 836
            +L++I            +     +      A+    L      +L+ P+           
Sbjct: 1021 VLELIDFTKAEFDLPEQLPKAMLQYG--IAAEWVDVLHAWYLDILKAPLALMPAEAEATT 1078

Query: 837  --------MTTAMSCDSYSEVSVSGKINCPKKDII---------------------ISGR 867
                    + T     +  E+     +N  K   +                     + G 
Sbjct: 1079 PLINPNLCLATLSKQYTLVEMEFYLPLNALKDTQLNALLNQFGYRSTLKFDDLQGMLKGF 1138

Query: 868  IDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
            ID     +   +I +YK++H       +             +  Q  +Y   L  
Sbjct: 1139 IDLTFEYEGKFYIADYKSNHLGDDIYAYHQAALQGAIKEHHYDLQYILYSLALHR 1193


>gi|120437697|ref|YP_863383.1| UvrD/REP family helicase [Gramella forsetii KT0803]
 gi|117579847|emb|CAL68316.1| UvrD/REP family helicase [Gramella forsetii KT0803]
          Length = 1035

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 149/892 (16%), Positives = 295/892 (33%), Gaps = 129/892 (14%)

Query: 52   TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
              ++           +  +     Q   P+K     +I      ++  + +  +   +  
Sbjct: 260  HFRKLQSGNTSVNFNAKWAEKIGDQPLYPKKASEVAKI--ALDSIQSDIAEIFNASRQAF 317

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN----DLLKKRDVSA 167
             +       +  L  L+L   +N   +E KK   ++    LI   N    + +K + V  
Sbjct: 318  FQIEFLNEIRKNLVQLSLLNEINREVQEIKKDRNLV----LISEFNPKISEQVKDQPV-P 372

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +I  ++ +   H  IDE QDTS +QWE +  L  +             L  VGD KQSIY
Sbjct: 373  FIYERLGERYQHYFIDEFQDTSTMQWENLIPLIGNKLDSAEAAG----LTLVGDAKQSIY 428

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             + G   +++L    +   + T    +  ++ LP +FRS ++I+   +  F         
Sbjct: 429  RWRGGRAEQLLDLSNL---KITPFQTEQKVVNLPDNFRSGSEIVNFNNSFFQ-------- 477

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                       +S I      +L++    +                D+  +E    I  +
Sbjct: 478  ---------FAASIISFPEYAELFQASAQKPKKGDFGYVNIEFVEADNREEEFE--IYPK 526

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +I   I N+            + +  +DI +L RK+ +   I          + ISV+ +
Sbjct: 527  KILEIIKNL----------DLKGLNRRDICILTRKKSEGVAIAEFLNE----HSISVISS 572

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            +  +L+    ++ ++ L  F ++ EDD                  +              
Sbjct: 573  ETLLLSQSKKVQFIVNLLAFSVNSEDDQLK---------------LQVFDYLAETYVAPE 617

Query: 468  EYIQKFANCGISKFQHVIKYIHEL-----IHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            E  Q               ++ +      +   +  S ++    I+ +            
Sbjct: 618  ETHQILLQNLPKNGAEFFDWLSDYNVQFEMEQLKRLSLYESIEYIIKSF--------HLV 669

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
             +    +  FL+F     Q + +SL + + + +Q    +        N V+IMT+H +KG
Sbjct: 670  EKSDAYIQFFLDFVFETSQKTSNSLNDFLEKWDQKKDKLSIVVPETDNAVQIMTIHKSKG 729

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PVV      S +   ++      +   N          +  + N   +     L   
Sbjct: 730  LEFPVVIYPFANSDLQDTRNDNLWLNINDENIPVAYVSASQKMLNWNENAAAKYNDLIYK 789

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             + +   +LYV  TRA+ QL I  + +   +   N       +  ++          L  
Sbjct: 790  NELDTLNVLYVASTRAAQQLYILSNYHDKAKNSPNIPD----LLINYLRSTGKWNDSLKY 845

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                 E +                 E+ K             S  +N        + S  
Sbjct: 846  EFGDSEKLI----------------ESKKAGNFSISNKHYYSSSTQNKAVHIVTRSGS-- 887

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                           +   +G I H++L  I        K  I +    N+ +      +
Sbjct: 888  --------LWDSKQQEAIEKGEIAHEILAQI-NTSADLDKAVIWAI---NSGMITKASKR 935

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
             +   I+ ++ +P +    +  + +      +I   +   +   R D+I+I  +NI I +
Sbjct: 936  EITDLISGIINHPELHQYYTGGTKN--LNEKEIITTEGKRL---RPDRINIDGKNITIID 990

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVF 933
            YKT             TH  Q+S Y   L +     ++  CLL+Y + P + 
Sbjct: 991  YKTGG--------FVDTHTKQISNYSDALSEM--GYNVDKCLLVYTNNPILI 1032


>gi|171912577|ref|ZP_02928047.1| probable helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 1067

 Score =  255 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 137/865 (15%), Positives = 268/865 (30%), Gaps = 102/865 (11%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
             L  +   +  + ++I          + T +   + +     Y    +    L F DL  
Sbjct: 281  PLDRQAGNALADVLEILVARALLVHLRRTRSQREIVRIYETTYHRQVRSRGRLVFSDLAW 340

Query: 155  N------TNDLLKKR--DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
                   T  + +     +   + +++D + +H L+DE QDTS  QWEV+  L E+    
Sbjct: 341  LLCGRVQTTAMAEHDWEAMRTALEFRMDAKYDHWLLDEFQDTSERQWEVMSPLLEEA--- 397

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
            +      R++F VGD KQSIY +  AEP+     +          G +     L  S+RS
Sbjct: 398  RQDPEERRSVFLVGDVKQSIYLWRQAEPELFHHVETAWS------GHRLQTTPLNESYRS 451

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
               +L +V+ VF   E                       G  +LW+       S      
Sbjct: 452  CPQVLGMVNGVFLNAERELE---------------ALFPGLGRLWKF-EEHRCSARVAWL 495

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                +       +   +     I    +N+I        G           VLVR  +  
Sbjct: 496  AGHAALVHVAALDEETTEEDGPITLGAANLIREINPIGRGLT-------CAVLVRSNRTA 548

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
              ++   R L     I    +   ++ D+ +   L++L +  +   D  ++  +L SPL 
Sbjct: 549  RALSDALRRLLGMEVIC--ESQENVVVDNPSTLALLSLLQVAVHPGDSTAWEHLLMSPLR 606

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                                     +  N        +   +   +    F      +  
Sbjct: 607  -------------------------EAINTQRLTRPALTARVRADLSNEGFLPVLQKWAE 641

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
            IL      ++ +          L + L+     +++    + E    L        R  S
Sbjct: 642  IL------RRALPAQDAFTSRRLAQLLDLAADFDESGSRDVGEF---LSTARDHSVREDS 692

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS- 625
            A+   +++MTVH +KGL+  VV L +   +        ++ +           +  P+  
Sbjct: 693  ASAQAIQVMTVHQSKGLQFDVVILPELQGEALDAVQRNRLFVARKERGAVSWMLDKPEKV 752

Query: 626  -KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
               R+ ++    +  K     E     YV MTRA   L +        +K         +
Sbjct: 753  VVERDEVLLTEQRREKARQAFEGLCRFYVAMTRAKLGLYVL----LDPKKVRASNNEGRI 808

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +             +L        W   + + +       E  +    +         L 
Sbjct: 809  LAMRLEPGFDPVPYELVGVGGLATWENGDRNWY----MAHEVTKVQAPVASIAVPDANLG 864

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
            + I+          PS  ++      E L  +       G  +H+L   I  L E     
Sbjct: 865  TLIRAVNKPLERRAPSGEESFVLRGGELLSTAREVKRQHGTRVHELFSAIAWLEEVPEPV 924

Query: 804  FITS---YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPK 859
             +     +    A +            + R++ +P +                 + +  +
Sbjct: 925  ALWKTKGWVA--ADVASDGSGDAAAEEVLRVISSPEVQPWFRKGGQQRTAWTERRFDYIE 982

Query: 860  KDIIISGRIDQISISQQ------NIFIFEYKTHHHV-PQEIEHIPYTHIAQLSIYEKILK 912
            K   +SG +D++ +            I ++KT   V   ++      +  QL++Y   + 
Sbjct: 983  KGGWVSGIVDRVVVEWDASGKASRATILDFKTDAVVTEDDMAARAAGYAPQLALYVPAVM 1042

Query: 913  DSYPNKSL--VCLLIYVSEPKVFII 935
                 K++     LI+    KV  +
Sbjct: 1043 RMTGLKAVAIGKALIFTVMGKVVPV 1067


>gi|330890183|gb|EGH22844.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. mori str.
           301020]
          Length = 669

 Score =  255 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 104/646 (16%), Positives = 212/646 (32%), Gaps = 125/646 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   ++E I   D     +  K        A  +  HY+   K    +DF
Sbjct: 129 DDGVDEIKNMIGSWKNELILPADALENARNPKE-----QTAAIVYTHYQRTLKAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILLPVKLFQEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             S      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 233 --SRHQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLISNNPHAFEK---------------------QLWSEMGHGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCRNEDAEAERVAMEILTLH---------LRTDRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y   ++        +    + Q   +++  +        P  
Sbjct: 415 STTLEKLGNYATERKVSMYAATEEIGLGEHLDSRYTDRLQRFKRWMDGVRQQCAQNDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              +E      +  +   +      L  ++    +++E I +L
Sbjct: 475 ALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKL 534

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++    +    V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +         + +   +D   +    T +  K        +    
Sbjct: 620 GEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 665


>gi|318607671|emb|CBY29169.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 674

 Score =  255 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 103/663 (15%), Positives = 214/663 (32%), Gaps = 121/663 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ + +  +    + D      + +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLISQISNWKNDLLDPAAAAVLARSERD--KLFVHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+       +R +    + ++L+DE QDT+  Q+++++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQND---LEVRERWQNRLRYLLVDEYQDTNTSQYQMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     S      VGD+ QSIYS+ GA P+ ++       +          +I+L 
Sbjct: 233 ----------SRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ--------LQVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S                              
Sbjct: 275 QNYRSSGRILKAANILIANNSHVFEKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E        +   ++    A R+            + ++   +  Q  D  +L R
Sbjct: 305 -----ELEYGDELKVITANNEDHEAERVV---------GELIAHHFVKKTQYSDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        I K+        ++++               G+   Q    ++  +I +
Sbjct: 407 NTPKREIGSATIQKLGEWANVRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWMEGIIRL 466

Query: 495 AQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E N   +
Sbjct: 467 VEREPIAAVRDLIHGIDYESWLFETSPSPKAAEMRMKNVNLLFSWMTEMLEGSELNEPMT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D + +  +   S  +          +        +
Sbjct: 612 CKERRQYGELIRPEPSRFLMELPQDDLKWENERKAVSPEERMQKGQSHLANIRAQLANAK 671

Query: 727 EET 729
           +  
Sbjct: 672 KPQ 674


>gi|254491814|ref|ZP_05104993.1| ATP-dependent DNA helicase Rep [Methylophaga thiooxidans DMS010]
 gi|224463292|gb|EEF79562.1| ATP-dependent DNA helicase Rep [Methylophaga thiooxydans DMS010]
          Length = 663

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 92/583 (15%), Positives = 206/583 (35%), Gaps = 85/583 (14%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           ++++ ++    S   ++   +  +   ++       ++ ++       A  +   Y EA 
Sbjct: 111 RDLMGRDFAADSEHAEQVQWQISEWKNQLILPDKAMQIAEAGTQMS--AAKVYPRYVEAL 168

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    +DF+DLI+    L ++      +  K    I+++L+DE QDT+  Q+E+++ L  
Sbjct: 169 KAYNAVDFDDLILKPVILFREH---REVLQKWQARIHYLLVDEYQDTNGCQYELVKQLVG 225

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                            VGD+ QS+YS+ GA P+ + + +    +          +I+L 
Sbjct: 226 IREA----------FTVVGDDDQSVYSWRGARPENLAQLQTDYPR--------LKLIKLE 267

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS   IL V + +     +                         QLW  +      +
Sbjct: 268 QNYRSMGRILRVANTLIRNNPHVFEK---------------------QLWSAM-----GE 301

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
            +P +       D   ++  +                   +  +  K     KD  +L R
Sbjct: 302 GDPIRVIGCRDDDHESEKVVSE------------------LLYHKLKHQASFKDYAILYR 343

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  I  + R     + +             + +KD+MA  R + +Q+DD +F+ ++
Sbjct: 344 SNHQSRPIERVLRE----HNVPYFLTGGTSFFSRIEVKDIMAYLRLLANQDDDNAFLRVI 399

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------FQHVIKYIHELIHI 494
            +P        +  +         +++    +F              +H   ++ ++   
Sbjct: 400 NTPRRGIGSTTLQTLGNYATERQTSLFGACFEFGLAEQLSAKAMLNLEHFANWLVDIADR 459

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLR--NEQNSYSSL 547
           A+          ++   + R       G        +D + E L++  R         S+
Sbjct: 460 AKRGDLMSAIRDLIEETEYRGWLEETSGDPNKAERRMDNVLELLSWIERIIENDTEQKSI 519

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            ++ + L       ++      + V +MT+H AKGLE P VF++    ++  H++  +  
Sbjct: 520 GDIAARLTLMDILDRQEDENQADAVHLMTLHAAKGLEFPHVFMIGMEEEILPHRNSIEED 579

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            +        + I   Q      + +   ++ +K   EE   L
Sbjct: 580 SIEEERRLTYVGITRAQRSLVMTMANTRKRYGEKMDCEESRFL 622


>gi|315125367|ref|YP_004067370.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas sp. SM9913]
 gi|315013880|gb|ADT67218.1| Rep helicase, a single-stranded DNA-dependent ATPase
           [Pseudoalteromonas sp. SM9913]
          Length = 610

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 102/645 (15%), Positives = 208/645 (32%), Gaps = 122/645 (18%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
            +    K+ L   + +    ++        + ++      L   L A Y+   +    LD
Sbjct: 61  DELKKDKDLLNLLKMQIGSWKNELILPEQAIREAREPQKALFAQLYARYQNQLRAYNALD 120

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F+DLI+    LL     S   R +  Q   ++L+DE QDT+  Q+++++ L  +      
Sbjct: 121 FDDLIMIPTLLLSSNATS---RERWQQRFRYLLVDEYQDTNTSQYQLVKLLVGE------ 171

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                     VGD+ QSIYS+ GA P+ ++   +              +I+L  ++RS  
Sbjct: 172 ----RARFTVVGDDDQSIYSWRGARPQNLVLLSKDYP--------GLRLIKLEQNYRSAG 219

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL   + + +   +       S              G  +  + +  + +         
Sbjct: 220 RILKAANILIANNPHEFEKKLFSEL------------GYGEQIKVIGCRDE--------- 258

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                            + R+   I          S+   +    KD  +L R       
Sbjct: 259 --------------EHESERVVAEI---------ISHKFMKRTSYKDYAILYRGNHQARG 295

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                       +I    +          IKD+MA  R +++Q+DD +F+ ++ +P    
Sbjct: 296 FEKSL----MSNRIPYKISGGMSFFSRSEIKDIMAYLRLLVNQDDDNAFLRIVNTPRREI 351

Query: 449 SEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPH 501
               + K+ T    + ++++            K           +++ EL   A      
Sbjct: 352 GTVTLEKLGTLANEKHQSLFATCFDNDLGYRLKGRGFNALAGFARWVVELSDNAVRSDTL 411

Query: 502 DFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLRN----EQNSYSSLQELIS 552
           +    ++               ++     +  + E   +          N   +L E++S
Sbjct: 412 EAVKDLVRNINYEAYLYESSPSAKAAEMRMKNVSELYRWITDMLTGDADNPPMTLAEVVS 471

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           +L       +       + V+++T+H +KGLE P VF+V     +  H+           
Sbjct: 472 KLTLRDMLERNEEEDEADAVQLLTLHASKGLEYPYVFMVGMEEGLLPHQVSID------- 524

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                       +   +E  RL YVG+TRA  +L +        
Sbjct: 525 ----------------------------EDNVDEERRLAYVGITRAQQELTLTYAKIRRQ 556

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             +++Q      V +   +D   +  K  N+  +          +
Sbjct: 557 FGETSQTELSRFVQELPQDDLAFENKKAPNTQAERMEKGQARVAN 601


>gi|71735974|ref|YP_272392.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482511|ref|ZP_05636552.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|71556527|gb|AAZ35738.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320326736|gb|EFW82781.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331290|gb|EFW87233.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881655|gb|EGH15804.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330985668|gb|EGH83771.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331012841|gb|EGH92897.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 669

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 99/608 (16%), Positives = 200/608 (32%), Gaps = 120/608 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  +  HY+   K    +DF+DLI+    L ++    A I  K   ++ ++L+DE QD
Sbjct: 162 QTAAIVYTHYQRTLKAYNAVDFDDLILLPVKLFQEH---ADILEKWQNKVRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L            S      VGD+ QSIY++ GA P+ ++  K      
Sbjct: 219 TNASQYLLVKLLIG----------SRHQFTVVGDDDQSIYAWRGARPENLMLLKDDYP-- 266

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST+ IL   + + S   +A                       
Sbjct: 267 ------SLKVVMLEQNYRSTSRILRCANVLISNNPHAFEK-------------------- 300

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            QLW ++    +                + +  +    A R+A  I  +           
Sbjct: 301 -QLWSEMGHGDEI--------------RVIRCRNEDAEAERVAMEILTLH---------L 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +      D  +L R      LI    +     +++    +          +KDLMA  R 
Sbjct: 337 RTDRPYSDFAILYRGNYQAKLIELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           +++ +DD +F+ ++  P        + K+         ++Y   ++        +    +
Sbjct: 393 LVNPDDDNAFLRVINVPRREIGSTTLEKLGNYATERKVSMYAATEEIGLGEHLDSRYTDR 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
            Q   +++  +        P      ++              +E      +  +   +  
Sbjct: 453 LQRFKRWMDGVRQQCAQNDPIAALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEA 512

Query: 536 T---LRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
               L  ++    +++E I +L       ++    +    V++MT+H +KGLE P VF++
Sbjct: 513 LKNTLEKDEEGGMTIEEAIGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIM 572

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      ++  T EE  RL 
Sbjct: 573 GMEEEILPH-----------------------------------RSSIEADTIEEERRLA 597

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA   L     +      +         + +   +D   +    T +  K     
Sbjct: 598 YVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGN 657

Query: 712 YEWSTHHP 719
              +    
Sbjct: 658 TALADIRA 665


>gi|289759336|ref|ZP_06518714.1| helicase [Mycobacterium tuberculosis T85]
 gi|289714900|gb|EFD78912.1| helicase [Mycobacterium tuberculosis T85]
          Length = 953

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 130/922 (14%), Positives = 251/922 (27%), Gaps = 166/922 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L     E      V+DF   + +   L         +   + +    +L+DE QDT   
Sbjct: 85  PLLDALGERMHAGKVMDFAMQMASAARLAATSP---QVGRDLRRRYRVVLLDEYQDTGHA 141

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  V+ SL                L AVGD  QSIY + GA    + R          + 
Sbjct: 142 QRVVLSSLFG------GGVDDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFP---LSD 192

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
           G    ++EL  S+R+    L V + + +           S      R       G V+  
Sbjct: 193 GTPAPVLELLTSWRNPPQALRVANGISAEARRR------SVAVRALRPRPDAPPGAVRCA 246

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                      ++    +A  +                     +
Sbjct: 247 LL----------------------PDVQAEREWIADHLRMRYQRAEADG----------V 274

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +     VLVR+  D   I    R       I         L     + +++A+ R +   
Sbjct: 275 KPPTAAVLVRRNADAAAIADTLRA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVADP 330

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-----------------------QRHETETVYE 468
               + + +L  P +     D+  +                            +   + +
Sbjct: 331 TAGAAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCLAD 390

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
            I        ++  G  +   +   +  L       S  D    +        +  +   
Sbjct: 391 AISDPGSAEGYSVAGYGRIGALAGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRASAP 449

Query: 520 -RFGNEVIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIKR----AHSANH 569
              G    + LD F +           ++S +S+  L++ L+              +   
Sbjct: 450 VSGGWAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVAC 509

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + V+++TVH AKGLE  VV +      VF     +   +       P +      + +  
Sbjct: 510 DRVQVLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHG 569

Query: 630 NIVSDLIKHLKKSTQEEYN----------------RLLYVGMTRASDQLIICKHSNTSNE 673
             V D      +    +                  RLLYV +TRA D L++  H      
Sbjct: 570 IPVLDTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTG 629

Query: 674 KKSNQRT------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            K    +                     +V          ++  L ++  +  W A   +
Sbjct: 630 TKPRGPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLA 689

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKN-------DINEPYILNPSTIDTKGKT 768
               +              D       +  P +        D++                
Sbjct: 690 ARRGDVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPAR 749

Query: 769 NLE---------SLLSDNQTFNRGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWP 817
            L           L+ D     +     +L+  +   P+      +   ++  +      
Sbjct: 750 GLPNHLSVSSLVELVGDPVGARQ-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGAEL 804

Query: 818 AKEYKNLLLSITRLLENPM----MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQ 870
             +  +L  +  R + +P     +  A +  S++     +V      P  D ++ GRID 
Sbjct: 805 LFDLGDLPGAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRIDA 864

Query: 871 ISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYV 927
           + +       + ++KT                 QL++Y          P  S+     YV
Sbjct: 865 VFVDPDGGATVVDWKTGKPPHGPAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFYYV 922

Query: 928 SEPKVFIIPQNKLNKAFAEIST 949
                 +  +       A + T
Sbjct: 923 RSGITVVPDELPAPGELAMLLT 944


>gi|256384179|gb|ACU78749.1| UvrD/REP helicase domain protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385011|gb|ACU79580.1| UvrD/REP helicase domain protein [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296456014|gb|ADH22249.1| UvrD/REP helicase domain protein [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 722

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 111/602 (18%), Positives = 201/602 (33%), Gaps = 128/602 (21%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K    ++I  K  + KE+L    +         N    +    A       +   Y
Sbjct: 135 SENDKKTFDKKILYKIKEWKEELVDPDEAI------LNANSTYDRNSAI------IYKLY 182

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           +E   KN  +DF+DL I    L K       I  K     +++L+DE QDT+ IQ+ +I+
Sbjct: 183 QETLLKNNSIDFDDLQIYVYLLFKNH---QEILNKWRNAYDYVLVDEFQDTNDIQFSLIK 239

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            LT           +   L  VGD  Q+IYS+ GA+   +L   +      +        
Sbjct: 240 FLT----------INTNHLTVVGDPDQTIYSWRGAKLDIILNFNKTYSNAIS-------- 281

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  ++RST  IL + +      +  +     +      +                   
Sbjct: 282 IVLNQNYRSTKQILDISNSFIKNNKFREHKEIFTNNKSGKKVV----------------- 324

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                             L + +S +  A  +++ I  +I                KDI 
Sbjct: 325 ------------------LKECNSKTSEASYVSFKIKELIKQG----------YHYKDIF 356

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +L R    +            + KI           +   IKD MA  + I S +DDLS 
Sbjct: 357 ILYRMNAWSQEFEKEL----INKKIPFQLIGGIKFRERKVIKDAMAFLKMI-SIKDDLSS 411

Query: 438 VCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
             +L S +       I KI         ++++ I       +      +  + E+   A 
Sbjct: 412 QRVL-SLIPKIGNITIEKIINIANLNHISIFDLITNEDKTLLQSITKNLDELIEVFKTAH 470

Query: 497 FC-----SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE-- 549
                  +  +    +L       +   +  ++ +D ++   +   R ++N  ++     
Sbjct: 471 QLYLDNTNIEEILKYLLIQSGYENKLKVKNEHDDLDNINALYDQLKRFDENFDANYYSED 530

Query: 550 --LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             LI+ L++   T     +   ++V ++TVH AKGLE+ +VF+      +F  +      
Sbjct: 531 NKLIAFLQEEALTSDIDEAQQIDKVSLLTVHAAKGLENKIVFITGLNQGIFPTR------ 584

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                       +    +   EE  R LYV +TRA ++L +   
Sbjct: 585 ----------------------------LSENNQKELEEERRALYVALTRAKEELFLTYV 616

Query: 668 SN 669
             
Sbjct: 617 KG 618


>gi|51598860|ref|YP_073048.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
           garinii PBi]
 gi|51573431|gb|AAU07456.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
           garinii PBi]
          Length = 658

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 97/578 (16%), Positives = 190/578 (32%), Gaps = 128/578 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE+  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSL+Q
Sbjct: 165 IFRLYEDRLRLYNSFDFDDLILKPKELLSNN---SDIRSKYSKRYKYVLIDEFQDTSLLQ 221

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  IR L            +   L  VGD+ QSIYS+ GA    +L+ ++          
Sbjct: 222 YNFIRLLI-----------NHSNLCCVGDDDQSIYSWRGASYNNILQFEKDYS------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RS  +IL V + V    +N +  +  S+                    
Sbjct: 264 --AKEIKLEQNYRSAKNILDVANSVILNNKNRKEKTLWSSKMCSK--------------- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                              + D + +          +A  I  +          +    +
Sbjct: 307 -------------VIDVFMFDDEIQES-------EFVASQIIEL---------SRIEGFK 337

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           +K I V++R       +  + +       I    +          IKD+++    I++ +
Sbjct: 338 SKKIGVIMRTNALFRNVEMIFK----RQGIKYKVSGGTSFFQRKEIKDIISYLNVIINPK 393

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGI------------- 478
            D   + ++  P     ++ + KI      +   +Y+ +                     
Sbjct: 394 SDYDLLRIINVPRRGIGKEYLKKIRDIADKKGCCIYDALCDIVFSFTSTSSYDKALNKQV 453

Query: 479 -SKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRF------GNEVIDVL 529
               +  + +I E  +       +  +    ++ + +     ++               +
Sbjct: 454 IESIEDFVSFIEEYQYKFSITKNTYSNIIKEMIESIEYWGFLVNENPNSIKVAEYKYQNI 513

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVV 588
           + FL+     E   +  L++L S L             + N  + +MTVH+AKGLE   V
Sbjct: 514 EGFLSIIKNWESKQFGELRDLSSFLNYILLQSNEVSEESENININLMTVHSAKGLEFDYV 573

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F +     +  H  I +   +    +                                  
Sbjct: 574 FFIAVEDNIIPHHRIIEESEIGLEEE---------------------------------R 600

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           R+ YV +TRA D LII   +    +++   +     + 
Sbjct: 601 RVFYVALTRAKDSLIITMANKRKKDRQIFDQLPSRFIS 638


>gi|213971096|ref|ZP_03399216.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            T1]
 gi|301384181|ref|ZP_07232599.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            Max13]
 gi|302060529|ref|ZP_07252070.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            K40]
 gi|213924204|gb|EEB57779.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            T1]
          Length = 1230

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 123/1004 (12%), Positives = 275/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +  +  E          LT     +        +            +  +    
Sbjct: 272  EKLAAWAADETQEALDLGTGFTRLTPDGVAEAWKSDPPSHPAF--------AAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDGLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDGAL-HGAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEGNDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVESVNHVFTRAEQRPEGKGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA R A
Sbjct: 485  FLFRDEKGNQVPFADALAQGRKETLEVDGTALTALTVWHLESEQPVSGVVYRQQLASRCA 544

Query: 351  YTISNMIGTDTIFSNGK------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++        G       +R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFTAPGNAQRGLRPADIAILVRDGKEAQAVRSQLTA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++  +     
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQE----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWEQRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +            +++        LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADG----------RAQISLQPTEALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      ++       +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNANSSMLHRSALGYLLGGGTALPESADL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN--- 749
                +D           P   P +   +  +             +       +       
Sbjct: 877  KVWLRDLAEGCSAIALQPVPEPTDDSFSAPRNEASLVKLLVPKRRAAENWWIASYSALRI 936

Query: 750  -----DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILVSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  IFT-------LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                      L   + ++ +   C +          ++ L  +  + L          + 
Sbjct: 997  AGNEGFANTALDPVELESVVARRCNRRGWKGWIITLRDWLQQMLNMPLRLSPDSTPVALG 1056

Query: 839  TAMSCDSYS-EVSV---------------SGKINCPKKDI----------IISGRIDQIS 872
                 + Y  E+                   +                  +  G ID   
Sbjct: 1057 DLNQPNQYRVEMEFWFASTNVNVAQMDTLVRRFTHDNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +  +         +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGSDDDAYTDLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F  P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSASQGAYFTRPPRELIESLDLLFQGKP 1220


>gi|325274372|ref|ZP_08140466.1| exodeoxyribonuclease V, beta subunit [Pseudomonas sp. TJI-51]
 gi|324100494|gb|EGB98246.1| exodeoxyribonuclease V, beta subunit [Pseudomonas sp. TJI-51]
          Length = 1224

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 123/1041 (11%), Positives = 283/1041 (27%), Gaps = 144/1041 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSM-----ETGNPTILKKAQTLQQASQTQ 60
            G       E   +          +   ++                +  +    +      
Sbjct: 211  GAEPAALIEASLQQRSEQLARLKAPWLQWAEELRQICRDALAAKQVDGRKMQARYFEPWF 270

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                 ++           T    +    + +             D    +          
Sbjct: 271  DKLHAWATDEQQVELDLGTGFTRLTPAGMAEAWKGEPPAHPGL-DAMQTLAQHLQALDSP 329

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             + L     A +++A +E  K++   + F+D+++     L   +    +   I ++    
Sbjct: 330  DALL-LEHAANWVSARFEVEKRRRAEMGFDDMLVRLQHALA-SEAGERLAGLIREQFPVA 387

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            LIDE QDT  +Q+ +   + +      + +     LF +GD KQ+IY+F GA+    L  
Sbjct: 388  LIDEFQDTDPVQYGIFERIYQ-----ISENRPDTGLFMIGDPKQAIYAFRGADIYTYLAA 442

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +R              +  L  ++RS+  ++  V++VF   E  QG            + 
Sbjct: 443  RRA---------TSGRLHSLDTNYRSSKAMVAAVNQVFLQAEARQGGRGAFLFRGADDNP 493

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    +   + +  +       Q       + +        LA   A  I +++   
Sbjct: 494  LPFIEVHAKGRSEQLVINGEASAALQCWQLQSEEPVSGSVYRQQLAASCASHIVDLLNGG 553

Query: 361  T------IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                     + G  R     DI +LVR   +  L+             SV  +D+  +  
Sbjct: 554  QQGTAGFRSAEGALRPCLPSDIAILVRDGHEAQLVRAELAARDVR---SVYLSDKDSVFA 610

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                 DL+A  +     + +      L S     S   + ++           E + +  
Sbjct: 611  AQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLPALDRLNQD--------ERVWEGW 662

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                  ++   +    L  +            ++    G +   +         L E L 
Sbjct: 663  VMRFRYYRETWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLL------HLAELLQ 716

Query: 535  FTLRNEQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                      + ++ L   L    Q          ++   V+++T+H +KGLE P+V+L 
Sbjct: 717  QAAGELDGEQALIRHLAEHLASSGQAGEDQILRLESDEQLVKVVTIHKSKGLEYPLVYLP 776

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               +          +                           + I+        E  RLL
Sbjct: 777  FICTSKPVDGSRLPLAWHDPEGHAHLTL----------TPSQEQIERADDERLAEDLRLL 826

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWY-------------------DMVYDSFHND 692
            YV +TRA     +         +K++Q                       D +       
Sbjct: 827  YVALTRAQHACWLGVADLKRGNQKTSQLHRSALGYLLGGGLALASSAQLADWLQALAAGC 886

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
              +    L  +  +   + +      P   P         +     +     +   +   
Sbjct: 887  PHIACPGLPPAQQQVYRMPHAERELLPARKPRRAAAEHWWIASYSALRVGDQTLGADSSQ 946

Query: 753  EPYILNPSTIDTKGKTNLESLLSDNQTFNR----GLIIHKLLQV-------IFTLPEHKR 801
               + +   +D +    + +   D   F R    G  +H LL+        + +      
Sbjct: 947  AQQLQDDEVVDVQVLREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFSLVSRNPQLI 1006

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSIT-------------------------------R 830
            +  +   C +             +  +                                +
Sbjct: 1007 ERTVGQRCNRRDWTGWIPTLSQWMQRLLSEALPLPGSGQSVTLGELCTYQIEMEFWFASQ 1066

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
             ++   +   ++  ++  ++            +  G ID +       ++ +YK++   P
Sbjct: 1067 RVDAEQLDRLVARHTHPGLARPAAQPTLLNG-MFKGFIDLVFELDGRYYVTDYKSNWLGP 1125

Query: 891  QEIEH---------IPYTHIAQLSIYEKILKDSYP--------NKSLVCLL-IYVSE--- 929
                +         + + +  Q  +Y   L             ++ +   L I++     
Sbjct: 1126 DTQAYDALAMEKAILEHRYDLQYVLYLLALHRQLRARLPDYDYDRHVGGALFIFLRGASS 1185

Query: 930  ---PKVFIIPQNKLNKAFAEI 947
                  F  P  +L ++   +
Sbjct: 1186 SGHGVYFTKPPRELIESLDAL 1206


>gi|169350949|ref|ZP_02867887.1| hypothetical protein CLOSPI_01726 [Clostridium spiroforme DSM 1552]
 gi|169292011|gb|EDS74144.1| hypothetical protein CLOSPI_01726 [Clostridium spiroforme DSM 1552]
          Length = 714

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 88/531 (16%), Positives = 164/531 (30%), Gaps = 109/531 (20%)

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            T  + +       +  K      +I +DE QD   I++ +++ +++             
Sbjct: 194 KTVYIFENYPD---VLEKWQYRFQYIHVDEFQDVGNIEYRLVKLMSDKAIT--------- 241

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
               VGD  Q+IYSF GA    +L   +          +    I L  ++RST +IL + 
Sbjct: 242 --CVVGDPDQTIYSFRGANVNYILDFDKDF--------KPCKTIVLNQNYRSTGNILNIS 291

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +    +N                                   ++    +   +T+  +
Sbjct: 292 NCLIRKNKNRLEKELF---------------------------TEATGGGEVIHYTAKNE 324

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                      A  I   I  +I             +  ++  +L R    +  I     
Sbjct: 325 QDE--------AEYICSEIEKIIND--------VDGVNYRNFAILYRANYLSRTIEQCL- 367

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                + I               IKD ++  + + + ED L+F  ++  P     +  I 
Sbjct: 368 ---ISHGIDYRIFGGLKFFSRKEIKDALSYLQLVCNSED-LAFERIINVPSRGIGKKTIE 423

Query: 455 KICT-QRHETETVYEYIQKFANCGI--SKFQHVIKYIHELIHIAQF--CSPHDFFTLILG 509
            I    R+   ++YE +  F++     SK +  I+ +   I  A+      H+ F  ++ 
Sbjct: 424 NIQAVARNNNVSLYEALTLFSDQIKLSSKAKKEIRILVAAIEKAKQSNLPLHEMFENLMN 483

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
                +          ID + E        E  +   L  + + L++         + + 
Sbjct: 484 DIGYIEMLNKNLEENRIDNIHELQRSIYEFESQN-PDLATIENYLQEIALYTDSDDNDDS 542

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             V +MT+H AKGLE   VF++     +F                               
Sbjct: 543 QYVSLMTIHMAKGLEFDYVFVLGLSEGIFPSFRALS------------------------ 578

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                          EE  RL YV  TRA  QL +      S    S + +
Sbjct: 579 ---------ESDEGIEEERRLAYVAFTRAKKQLYLTDSEGFSFVTDSPKIS 620


>gi|270158153|ref|ZP_06186810.1| ATP-dependent DNA helicase Rep [Legionella longbeachae D-4968]
 gi|289163586|ref|YP_003453724.1| ATP-dependent DNA helicase Rep [Legionella longbeachae NSW150]
 gi|269990178|gb|EEZ96432.1| ATP-dependent DNA helicase Rep [Legionella longbeachae D-4968]
 gi|288856759|emb|CBJ10570.1| ATP-dependent DNA helicase Rep [Legionella longbeachae NSW150]
          Length = 667

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 110/720 (15%), Positives = 233/720 (32%), Gaps = 140/720 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + NE    +   + P    +   +  + +L +       L     L++       E+   
Sbjct: 58  AANEMRARV-AAVLPPATRRGLKVATFHTLGLSI-IKRHLDLCD-LKKGFSIFDSEDCVQ 114

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS- 126
           +L  F    + T +                E + + Q +  + ++   T     +  A  
Sbjct: 115 ILRGFLPANRATEK----------------EFILQIQQKISRWKNDLLTPDQVINNPADA 158

Query: 127 --LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                A  L   Y++A K    +DF+DLI     LL +    + +      +I H+L+DE
Sbjct: 159 PYYEEAALLYPRYQQALKAYNAVDFDDLIRLPVSLLSEH---SSVSTYWQNKIRHLLVDE 215

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD++  Q+ +++ LT                  VGD+ QSIY++ GA+P+ + + +   
Sbjct: 216 YQDSNTSQYLLVKQLTG----------IRAHFTVVGDDDQSIYAWRGAKPENLKQLQLDY 265

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +          II+L  ++RST  IL   + + +  ++       S             
Sbjct: 266 PQ--------IKIIKLEQNYRSTNIILHSANHLIANNQHLFEKKLWSEF----------- 306

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            G  +L   +  + ++                    +  ++   I++ I           
Sbjct: 307 -GHGELLRVIRCKDEND------------------EAEQVVTDLISHKIRA--------- 338

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                  +  D  +L R    + +   + R     Y I    +          +KD+ A 
Sbjct: 339 -----RTEYGDYAILYRGNHQSRIFEKVLR----HYGIPYNISGGQSWFAKAEVKDVFAY 389

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCG 477
            + + +  DD +F+ ++ +P     E  +  +    +++  ++Y            A   
Sbjct: 390 LKLLCNASDDAAFLRVINTPKRGIGETSLDALGHYAQNKGISLYAASDHLALGEYLAEKP 449

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-----IDVLDEF 532
            +       ++ ++       S  +    ++                      +D + E 
Sbjct: 450 RAALLTFKSWMEQIKVRVTTGSIVEHLKQMVEDSGYEAHVYELCDTPAKAQKKMDNVWEL 509

Query: 533 LNFTLR-NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           L +  R   +N   +L E+I++L       +       + +++MT+H +KGLE P V+LV
Sbjct: 510 LEWIERLLSKNKEQTLAEVINKLILIDILDQAD-EQVTDTLQLMTLHASKGLEFPYVYLV 568

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      + +   EE  RL 
Sbjct: 569 GMEEELLPH-----------------------------------RVSIDEDQIEEERRLA 593

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA   L            +         + +            +  S  + + +A
Sbjct: 594 YVGITRAQKGLCFTLAKQRRRAGELQDCLPSRFLDELPPEHLEWFGKNVERSEEQSKHLA 653


>gi|269103841|ref|ZP_06156538.1| ATP-dependent DNA helicase Rep [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163739|gb|EEZ42235.1| ATP-dependent DNA helicase Rep [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 672

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 106/685 (15%), Positives = 219/685 (31%), Gaps = 135/685 (19%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL    LT+        + +++     + K  +    D   +
Sbjct: 98  ALGLKANFSLFDDQDQMALLKE--LTEDELEGDKDLLKQLLSSISNWKNDMLSPVDAAAR 155

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            R   +             L  +    Y+   K    LDF+DLI+    LL+  +    +
Sbjct: 156 ARSERD------------QLFAHCYHLYQRQMKAYNALDFDDLILMPVLLLRDNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +   +I ++L+DE QDT+  Q+  ++ L  +                VGD+ QSIYS+
Sbjct: 201 RSRWQNKIRYLLVDEYQDTNTSQYIFVKLLVGE----------RARFTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ +    +              +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAQPENLALLNKDFP--------SLKVIKLEQNYRSTSRILRTANILIANNPHVFEKTL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S                                 +            +  +  ++   I
Sbjct: 303 FSEL------------------------------EEGALLKVITAKNEEHEAEKVVGELI 332

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A+                      KD  +L R    + L            +I    +  
Sbjct: 333 AHR--------------FLNNTAYKDYAILYRGNHQSRLFEKAL----MQNRIPYKISGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R + +Q+DD +F+ ++ +P        + K+        ++++ 
Sbjct: 375 TSFFSRAEIKDIMAYLRLLTNQDDDNAFLRIVNTPRREIGPVTLEKLGNYANMRGKSLFA 434

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               Q   +++ EL   A+          ++              
Sbjct: 435 ASFELGLEQHLSGRGLESLQRFTRWVVELADNAERGDTVAAVRQLVRDIHYEDWLYETSA 494

Query: 520 --RFGNEVIDVLDEFLNFT-LRNEQNSYS----SLQELISELEQYPPTIKRAHSANHNEV 572
             +     +  + +  ++     E ++Y     SL+E++  +       +     N ++V
Sbjct: 495 SPKAAEMRMKNVSDLYSWITADLEGDNYDQQERSLKEVVQRMTLRDMMERGEDDDNADQV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V+LV +   +  H+                               
Sbjct: 555 QLMTLHASKGLEFPYVYLVGSEEGILPHQTSID--------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +   EE  RL YVG+TRA  +L            +  +      +Y+   +D
Sbjct: 588 --------EDNIEEERRLAYVGITRAQRELTFTMCKERRQYGELIKPEPSRFLYELPQDD 639

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTH 717
                 K   +  +          +
Sbjct: 640 LEWDTEKKPVTAQERMQRGQAHIAN 664


>gi|92115386|ref|YP_575314.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM
           3043]
 gi|91798476|gb|ABE60615.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM
           3043]
          Length = 739

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 106/607 (17%), Positives = 206/607 (33%), Gaps = 122/607 (20%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +    +++     A +     L   Y+ A ++  ++DF +L++   +LL+       + 
Sbjct: 157 EEGLRAHQVQTHGDAYMGQMVELYERYQLACERAGLVDFGELLLRGLELLRDNPA---LL 213

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               +  +H+L+DE QDT+ +Q+  ++ L  D             +  VGD+ QSIY + 
Sbjct: 214 AHYRERFSHLLVDEFQDTNTLQYAWLKLLAGD----------RAGMTVVGDDDQSIYGWR 263

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+ + + R                S + L  ++RST+ IL   + + S      G    
Sbjct: 264 GAKVENIRRFAEEFPN--------TSTVRLEQNYRSTSAILEAANALISHNAGRMGK--- 312

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             +LW             +  S  + F+ L +       AR I 
Sbjct: 313 ------------------ELW-------TDGVQGEPISVYAGFNDLDE-------ARFIV 340

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            T++  +   +            +DI +L R    + ++            +        
Sbjct: 341 DTLNEEVNKGSA----------RRDIAILYRSNAQSRVLEEAL----IRSGVPYRIYGGQ 386

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY 469
              + L IK+ +A  R +L+++DD S   ++  P        +  +    R ++ ++++ 
Sbjct: 387 RFYERLEIKNALAYLRLMLTRDDDASLERVVNVPARGIGTRTVEVLRERARTQSVSLWQA 446

Query: 470 IQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           +              S        I  L +     + H+    +L A    +   +  G 
Sbjct: 447 LHDSLSEGALKGRAASALSAFSDLIERLDNDTAGMALHELIEHVLHATGLLEHHRNEKGE 506

Query: 524 E---VIDVLDEFLNFTLRNEQNSYSSLQELIS-------ELEQYPPTI-KRAHSANHNEV 572
           +    ++ L+E +N      Q    SLQE+          L +              + V
Sbjct: 507 KGQARVENLEELINAARNFAQGDPFSLQEIGEGAAALEPFLAEAALNAGDHEADDFEDSV 566

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H+AKGLE PVVF+      +F HK   +                           
Sbjct: 567 QLMTLHSAKGLEFPVVFVAGVEEGLFPHKMSLEEPG------------------------ 602

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                       EE  RL YVG+TRA  +L +          K         +++     
Sbjct: 603 ----------RLEEERRLCYVGVTRAMRKLYLTHAEIRRLHGKETFSRPSRFLHELPEAL 652

Query: 693 ERVKKIK 699
               +++
Sbjct: 653 LEEVRLR 659


>gi|330976482|gb|EGH76534.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 669

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 101/646 (15%), Positives = 210/646 (32%), Gaps = 125/646 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   K    +DF
Sbjct: 129 DDGVDEIKNMIGSWKNDLILPAEALENARNPKE-----QTAAIVYTHYQRTLKAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILLPVKLFQEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST  
Sbjct: 233 --TRHQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTRR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLISNNPHAFEK---------------------QLWSEMGHGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCRNEDAEAERVAMEILTLH---------LRTDRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    + Q   +++  +        P  
Sbjct: 415 STTLEKLGNYATERKVSMYAATDEIGLGEHLDSRFTDRLQRFKRWMDGVRQQCAQNDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              +E      +  +   +      L  ++    +++E I +L
Sbjct: 475 ALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKL 534

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++    +    V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +         + +   +D   +    T +  K        +    
Sbjct: 620 GEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 665


>gi|152984144|ref|YP_001350187.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PA7]
 gi|150959302|gb|ABR81327.1| exodeoxyribonuclease V, beta subunit [Pseudomonas aeruginosa PA7]
          Length = 1244

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 138/1028 (13%), Positives = 292/1028 (28%), Gaps = 145/1028 (14%)

Query: 25   YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
               + ++   ++ +   G  +       LQ  +      ++ + L  F        +  +
Sbjct: 258  ETLLRELRPCLNGNSYRGKDSDETFDAWLQALADWSEGGDQPANLGKF-----GQTRIKL 312

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
              +    + P L           I         +   +    L     +    E  K++ 
Sbjct: 313  TAKRAAPEHPAL---------RAIDAWAAHQEERPDIAPHLLLHALGEVGRELEVEKQRR 363

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
              + F+DL+   +  L+       +   I ++    LIDE QDT  +Q+ +   +     
Sbjct: 364  AEIGFDDLLTRLDRALQGPG-GERLAQLIREQFPVALIDEFQDTDPVQYRIFERIYRIAA 422

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +    LF +GD KQ+IY+F GA+    LR +            +     L  +F
Sbjct: 423  DPAGPQARETGLFMIGDPKQAIYAFRGADIHTYLRAREA---------TRGRHYTLGRNF 473

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RSTA ++   ++ F+  E     +                V      E++          
Sbjct: 474  RSTAAMVAAANRCFAFAEEHPRGAFRFAREGVENPLPFHAVDAQGRAERLSIDGAEAPAM 533

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMI------GTDTIFSNGKKRVIQAKDILV 378
                  +    L   +    +A R A  I   +              G  R ++  DI +
Sbjct: 534  TFWCLDAEAGVLGSAAYRQEMAERSASAIRRWLSLADLGRAGFADEQGGWRALRPADIAI 593

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            LVR R +      +   L      SV  +DR  + D     DL+   R       D    
Sbjct: 594  LVRGRAEA---EAIRSALAARRLASVYLSDRDSVFDSQEAADLLHWLRACADPGADTLLR 650

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
              L S   +     + ++           E   +        ++ + +    L  + +  
Sbjct: 651  VALASRSLHLDWATLERLNQD--------ELFWERMVLRFRDYRRLWQTQGVLPMLRRLL 702

Query: 499  SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
            +  +    +L    G +   +         L E+L          ++ ++ L  +L+   
Sbjct: 703  ADFELPARLLRHTDGERSLTNLL------HLAEWLQRAAVELDGEHALVRHLAEQLQSPG 756

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                    ++ + ++++T+H +KGLE P+V L    S      +       P+   + GI
Sbjct: 757  SEEILRLESDADLIKVVTIHKSKGLEYPLVLLPFICSWKELDGNSGA----PASFHEDGI 812

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
            P  + +   R    +   +        E  RLLYV +TRA   + +      +   +S +
Sbjct: 813  PGQVVELARRKEQAARAYEQANDERLGEDMRLLYVALTRARHSVWLGIAPLVAGNSRSPE 872

Query: 679  ---------------------RTWYDMVYDSFHN---DERVKKIKLTNSINKDEWIAYEW 714
                                  +    +         +           + + E +    
Sbjct: 873  LHKGAMGYLLAGGAAISGEGLASCLAALRGECAGIVVEPAPPADAEPYVMGRGEALGQAR 932

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
             T                 +      +   +    +  EP     +T   +G++  +   
Sbjct: 933  ETCRSSREKWWVASYSGLQLQASSGLEDDEAVAVAESQEPISAEEATFQEEGRSAEQPPP 992

Query: 775  S-----------DNQTFNRGLIIHKLLQVIFT-------LPEHKRKNFITSYCTKNAKLW 816
            +             +    G  +H LL+               +R+  I   C       
Sbjct: 993  AVASAMRDDLHRFPRGPAPGTFLHGLLEWAGREGFEAARADAPRRRELIARRCELRGWKD 1052

Query: 817  PAKEYKNLLLSITR-LLENPM----MTTAMSCDSYSEVSVSGK----------------- 854
             A+     L       L  P     +   ++     E   +                   
Sbjct: 1053 WAEPLDLWLEQYLAEPLRWPGGEASLAGLLAYQVEMEFWFASHQVQAEAIDALVRRHTLG 1112

Query: 855  ------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------T 899
                  +     + +  G +D +   Q   ++ +YK++     +  + P           
Sbjct: 1113 GAARPALAPTLLNGMFKGFVDLVFEHQGRFYVADYKSNWLGADDGAYSPEAMAAAVLENR 1172

Query: 900  HIAQLSIYEKILKDS---------YPNKSLVCLLIYVSEPKV------FIIPQNKLNKAF 944
            +  Q  +Y   L            Y       + +++   +       F  P  +L +  
Sbjct: 1173 YDLQYVLYLLALHRQLQARLPDYDYDRHVGGAVYLFLRGARAATQGLHFERPPRELIEDL 1232

Query: 945  AEISTKIP 952
              +    P
Sbjct: 1233 DALFRGQP 1240


>gi|149376225|ref|ZP_01893989.1| ATP-dependent DNA helicase Rep [Marinobacter algicola DG893]
 gi|149359422|gb|EDM47882.1| ATP-dependent DNA helicase Rep [Marinobacter algicola DG893]
          Length = 654

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 101/635 (15%), Positives = 212/635 (33%), Gaps = 123/635 (19%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + S D  ++L   Q      ++   + +    ++          +  HY E  K    
Sbjct: 105 MREASADAGDELSDVQMTISSWKNAMRSPQDAWSRAADEREQRIAIIYRHYNEYLKAYNA 164

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+DLI+    L +       +  K  ++I ++L+DE QDT+L Q+E+++ L  +    
Sbjct: 165 VDFDDLILLPVQLFRDNPE---VLQKWRRKIRYMLVDEYQDTNLCQYELVKLLVAERAA- 220

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                       VGD+ QSIY++ GA P+ + + K               I++L  ++RS
Sbjct: 221 ---------FTVVGDDDQSIYAWRGARPENLAQLKEDFP--------SLKIVKLEQNYRS 263

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  IL   + V +   +    +  S  T+                               
Sbjct: 264 TVRILRCANTVIANNPHVFEKALWSDHTVGDEL--------------------------- 296

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                    + +  S    A R+A  I              K+ +  +D  VL R     
Sbjct: 297 --------RIVRCRSEDAEAERVATEI---------LDQKLKKGLAFRDFAVLYRGNHQA 339

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            L+    +     Y+I    +          IKD M+  R +++ +DD +F+ ++  P  
Sbjct: 340 RLLEMKLQA----YQIPYHISGGQSFFSKNEIKDAMSYLRLLVNPDDDAAFLRVVNVPRR 395

Query: 447 NFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCS 499
                 + ++    R    +++  +               + +    ++           
Sbjct: 396 EIGPRTLEQLSHYARSRNVSLFRALGDMGAETHVTEKGLDRLRRFAHWVDNTCERLHRED 455

Query: 500 PHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQN-----SYSSLQE 549
           P      +    +  +      G        ++ +   +    R   +         +++
Sbjct: 456 PIPVIKQLFTDIEYEEWLHLHSGSPKQAERRMENIWYLVESIQRMLDDGKGTADEMGIED 515

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            IS L       +R    + ++V+++T+H +KGLE P VF++    ++  H         
Sbjct: 516 AISRLILRDMMEQREEEDDSDKVQLLTLHASKGLEFPHVFIMGLEEEILPH--------- 566

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                        +++   EE  RL+YVG+TRA + L +   + 
Sbjct: 567 --------------------------RSSIEEGNVEEERRLMYVGITRARETLTLTFAAQ 600

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
                +  +      + +   +D R +     +  
Sbjct: 601 RKQYGEKLETIPSRFLDELPEDDLRWEGTGDLDVE 635


>gi|258542141|ref|YP_003187574.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256633219|dbj|BAH99194.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256636278|dbj|BAI02247.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03]
 gi|256639331|dbj|BAI05293.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07]
 gi|256642387|dbj|BAI08342.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22]
 gi|256645442|dbj|BAI11390.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26]
 gi|256648495|dbj|BAI14436.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32]
 gi|256651548|dbj|BAI17482.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654539|dbj|BAI20466.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12]
          Length = 743

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 104/654 (15%), Positives = 191/654 (29%), Gaps = 119/654 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ +   Y+   K+    DF DL+++  ++L+       +  +  +   +IL+DE QDT+
Sbjct: 189 ARAIYTAYQVRLKQLNACDFGDLMLHVTEILRT---RPDVLAQYHRLFRYILVDEYQDTN 245

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ+  +R L +           P  +  VGD+ QSIYS+ GAE + +LR ++       
Sbjct: 246 TIQYLWLRLLAK-------HAEGPANICCVGDDDQSIYSWRGAEVENILRFEKDFP---- 294

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RST  IL     + +      G +                     
Sbjct: 295 ----SAKVVRLERNYRSTRHILGAAAGLIAHNSERLGKTLRPGR---------------- 334

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                    + +       W S              AR +      +             
Sbjct: 335 ------EDAEGKKVSVLGVWDS-----------DTEARMVCEQAEKLRAQGHAL------ 371

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               K+I +LVR    T               +           +   I+D +A  R + 
Sbjct: 372 ----KEIAILVRAGFQTRAFEERL----MQTGLPYRIVGGLRFYERAEIRDALAYMRVLS 423

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQ 482
              DDL+F  ++  P        + K+    R     +    +K       K       +
Sbjct: 424 QPADDLAFERIINVPKRGVGPAGLQKLHAAARANNLPLTGGTEKLLEDNALKGKSAAHLR 483

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
            +++       I            +L        +      +    ++ L E        
Sbjct: 484 QLMEAFASTRDILAREGHVVAVEHLLEESGYMDMWRQDRSPDAPGRLENLKELTRALADF 543

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                     L   LE     +    +   + + IMT+H AKGLE   VFL      VF 
Sbjct: 544 GT--------LGEFLEHVALVMDHDENGQDDYLSIMTLHGAKGLEFDTVFLPGWEEGVFP 595

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +       +                                   EE  RL YVG+TRA 
Sbjct: 596 SQRTLDEGGL--------------------------------KGLEEERRLAYVGITRAR 623

Query: 660 DQLIICKHSN----TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            + II          + +     R   ++  +     +     +       +        
Sbjct: 624 QEAIIFHAGRRRIYANWQPSMPSRFLEELPDEHVVRHDEGGGFQRQGLNLSESVFDNGPI 683

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                  P+       QL D  + P+     + +       ++  ++ TK   +
Sbjct: 684 IARRRKDPMLEAAPALQLGDHVRHPRFGEGVVISADRHHVEVSFESVGTKRLLS 737


>gi|162455882|ref|YP_001618249.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161166464|emb|CAN97769.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 685

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 96/628 (15%), Positives = 197/628 (31%), Gaps = 99/628 (15%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            +  ++  +++ F+         +  K       ++  +   Y  A +     DF+DLI 
Sbjct: 117 AILSRISNAKNAFLDAESWAEAQRQGKGIDEYDEISMLVYPRYMAALRSFQAFDFDDLIC 176

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               L +     A +  +       +++DE QDT+  Q E++R L  +           R
Sbjct: 177 EVVRLWQT---RADVLERWRMRYRFVIVDEYQDTNRAQLELLRLLCGE----------HR 223

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIY++ GA+ + +L  +               +++L  ++RS   IL V 
Sbjct: 224 NVVVVGDDDQSIYAWRGADVRNILDFEEHF--------SGAKVVKLEHNYRSRKPILDVA 275

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + V +     +                            + ++ +              +
Sbjct: 276 NAVLAKSGARRHKK-----------------------SLIATRVEGDKVRSIICVDPDVE 312

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                      A  +A     ++  +           + KDI VL R       I    +
Sbjct: 313 -----------ASFVATEAQRLLERE---------AARPKDIAVLYRSNLQAAAIESALK 352

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 +I +         +   +KDL+A  R  L+  D++    +L  P     +  + 
Sbjct: 353 E----RQIPIRMIGGQQFFERKEVKDLIAYLRVALNPGDEMCLRRILNYPARGIGDAAVA 408

Query: 455 KI-CTQRHETETVY------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           K+         +++        + +  +  I   + +++ I       +   P       
Sbjct: 409 KLGAYATAHDASLWTAVSRPHAVHELTSAAIEGCRQLLRIIEATRARFERGEPSAEVARA 468

Query: 508 LGAKKGRQQFISRFGNEVID------VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
           L A  G ++ I    +           ++  LN   R ++            L       
Sbjct: 469 LLADAGFKEDIMAGSSTANAAARRWGNIEGLLNVFARRDEKGKGDRASFAEFLRLLALRQ 528

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                   + V + T+H AKGLE P VF++     +  H+         +          
Sbjct: 529 DSEEEEATDRVTLTTMHGAKGLEFPYVFVIGLEEGLMPHQRSLDERATDAAPSGAEGGDT 588

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
              S                   EE  RL YV +TRA D+L + +  +  +  K   RT 
Sbjct: 589 GGHS------------------IEEERRLFYVAVTRARDRLYLTRAKHRGSRGKMVPRTP 630

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEW 709
              + +        ++     +   ++ 
Sbjct: 631 SRFMLEIPPELLEEREELAPVAPGMEKV 658


>gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep [Herbaspirillum seropedicae SmR1]
 gi|300076390|gb|ADJ65789.1| ATP-dependent DNA helicase rep protein [Herbaspirillum seropedicae
           SmR1]
          Length = 690

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 120/742 (16%), Positives = 228/742 (30%), Gaps = 139/742 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            L + E    + KD     +  VS  +      +   +  +      L+        ++ 
Sbjct: 65  ALEMQERIAKLLKDPKQAKHLTVSTFHSLGVKILRQESQHL-----GLKDRFSIMDSDDC 119

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           FSL+    +T      + +       K+  +   L +                       
Sbjct: 120 FSLVQELAVTTDKAIIRGVQNSISLWKNGLVDPDLAEKNARTEDEAQ------------- 166

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               A  +   Y    K    +DF+DLI    +L +  +    +R +  +++ ++LIDE 
Sbjct: 167 ----AARIYRSYVATLKAYQAVDFDDLIRLPVELFRSNEE---VRDRWQRKLRYLLIDEY 219

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+++ L                  AVGD+ Q+IY++ GA  + +        
Sbjct: 220 QDTNTCQYELVKLLVTGI-------GKKPMFTAVGDDDQAIYAWRGATIENLKLLGVDFP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      +I+L  ++RS+  IL   + V S        +  S   +          
Sbjct: 273 N--------LHLIKLEQNYRSSTRILQAANAVISNNPKLFDKTLWSEHGL---------- 314

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                 +  +  D   +       A +IA          T+ ++
Sbjct: 315 ------------------GDPITVMAMDDEEAE-------ADQIAI---------TLSAH 340

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             +R  +  D  +L R      ++    R      +I  V +      D   IKD++A  
Sbjct: 341 RFERRAKFADYAILYRGNHQARILEKSLR----RERIPYVMSGGQSYFDRAEIKDIIAYL 396

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEY------IQKFANCGI 478
           R I +Q+DD +F+  + +P     +  +  + T   + + +++E         K  +  +
Sbjct: 397 RLIANQDDDPAFIRAVTTPRRGVGQATLEVLGTLAGQWQCSLFEAVYKGGLEDKLTDRQL 456

Query: 479 SKFQHVIKYIHELIHIAQFCSPH-----------DFFTLILGAKKGRQQFISRFGNEVID 527
              +    +I+ L   A    P            D    I         F  R       
Sbjct: 457 LPLRKFCDFINALESRATRPGPSGSGENAGKVLDDMMEAINYEFYLYDSFEERAAQARWQ 516

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGL 583
            + +F+N+             E  + LE        +         + VR+ T+H +KGL
Sbjct: 517 NVVDFINWLKERACGGRDGEGEEKNLLEITQMVALMSMLEGRDEEQDAVRMSTLHASKGL 576

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P VFLV     +  HK         +                                
Sbjct: 577 EFPHVFLVGVEEGILPHKGDPDTPPEEAAARVEEERR----------------------- 613

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
                 L+YVG+TRA   L +         K+  +      V +   ++      +    
Sbjct: 614 ------LMYVGITRAQRSLHLSWCKRRKRAKEVIECQISRFVKEMRLDEGEAVPQESEKI 667

Query: 704 INKDEWIAYEWSTHHPENTPLE 725
             +      +     P NTP +
Sbjct: 668 TPQARLANLKALLQKPRNTPEQ 689


>gi|167623786|ref|YP_001674080.1| exodeoxyribonuclease V subunit beta [Shewanella halifaxensis HAW-EB4]
 gi|167353808|gb|ABZ76421.1| exodeoxyribonuclease V, beta subunit [Shewanella halifaxensis
            HAW-EB4]
          Length = 1240

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 148/966 (15%), Positives = 299/966 (30%), Gaps = 128/966 (13%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
            +WP    Q   +   + L          KKA    + ++     + +          K  
Sbjct: 248  IWPTEREQTETMLHALPL----NGARFGKKADGYPKLAKMLDDIDNWVTFGQGLPPAKAL 303

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
               ++ + ++NK      E     Q   +   +R                   +   + +
Sbjct: 304  EALSLNSLKLNKGG----EIPSAEQAPMLAHMERLTQLTSNLIPSFLYCARDGIAKRFAK 359

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K +  +L  +DL++     L     ++ +   I Q     LIDE QDT  +Q+E+  ++
Sbjct: 360  QKLERNLLTPDDLLLTLAGALSASTDNS-LASSISQRFPVALIDEFQDTDPLQFEIFNTI 418

Query: 200  TEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
             +      +       +L  +GD KQ+IY+F GA+    ++ +           Q     
Sbjct: 419  YQSTASDSSPAQQDKLSLLMIGDPKQAIYAFRGADIHTYIQARE----------QTAKHY 468

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  ++RS   ++  V+ +FS   +           ++  S    +              
Sbjct: 469  NLDTNYRSNRQMVDAVNGIFSHRADPFISQSIPFEAVKASSFADKK-------SLKEQVE 521

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI-GTDTIFSNGKKRVIQAKDIL 377
            D      +         L + ++  +LA  +A  I+ ++            + ++AKDI 
Sbjct: 522  DKSALRLRVLSEESEKGLNKTTARQLLADDVANEIALLLTDAQQNLCAIGDKPLKAKDIA 581

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VLVR R +      + +   +  +I  V   R  + + L  ++L  +   +   +D+ + 
Sbjct: 582  VLVRDRHEAN----VIKSALSLRQIGAVFLSRDSVFNTLEARELTLVLYAMADPKDERAL 637

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
               L + L  +S + I          +T+ E   +     + +          +  +   
Sbjct: 638  RSALATSLLGYSAEAIHHFNQDEDSRQTLLEQFAQLHQVWLKR--------GIMPALLTL 689

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
             S       +L A++G ++            L E L         S + +      L + 
Sbjct: 690  ASQTQIIERLLNAEEGERRLTD------FRHLGELLQQKATELDGSSALINWFEQALIEN 743

Query: 558  --PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                  +    +  N V+I+T+H +KGLE P+ F+              +    P L  D
Sbjct: 744  QPSEEAQLRLESEQNLVQIVTIHKSKGLEYPICFVPFVS-----LSRDNRKKPSPMLYHD 798

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                IW            +  +  K+ T  E  RLLYV +TR   +  +   +++   KK
Sbjct: 799  NNKLIWDI------EQSEEGWERQKRETLAEDLRLLYVALTRPVLKCYLYIANHSRFTKK 852

Query: 676  SNQRTWYD------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP---------E 720
            S   +         ++       +  + +     +      A       P         E
Sbjct: 853  SGMSSQLHETAIGYLLGIEDKACDYERLLTQAKRLQASTPDAISLKELAPAGSDVALSAE 912

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIK----------------NDINEPYILNPSTIDT 764
               L R+E+I+     + + +   +P +                    +  +     +  
Sbjct: 913  PIILARDESIETHFAPKVLKRPHLTPWRVGSYSGLVKHLAHEKVLPGADDEVFPEVDVII 972

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                N  S  +  +  N G  +H +L++I         +        +         + L
Sbjct: 973  DEVDNTPSRFTFERGANAGSFMHLVLELIDFTQAETDLDE-QLPIAMSKYGIDETWVEVL 1031

Query: 825  LLSITRLLENP-------MMTTAMSCDSYSEVSVSGKINCPKKD---------------- 861
             L    LL  P        +   M      E+     I+    D                
Sbjct: 1032 KLWYIDLLHAPLATDSSLKLAQLMPQQKLVEMEFYLPISALNADKLNALLTEFGYSAGLS 1091

Query: 862  -----IIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIY 907
                  ++ G ID         FI +YK++H             +     + +  Q  IY
Sbjct: 1092 FDDLQGMLKGFIDLTFEHNNQYFIADYKSNHLGDDLSQYHYSNMQQAIRSHRYDLQYIIY 1151

Query: 908  EKILKD 913
               L  
Sbjct: 1152 TLALHR 1157


>gi|123965572|ref|YP_001010653.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9515]
 gi|123199938|gb|ABM71546.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9515]
          Length = 802

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 93/571 (16%), Positives = 186/571 (32%), Gaps = 96/571 (16%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL-TEDFFVGKNTHSSPRTLFAVGDEKQS 225
             +R    +   H+L+DE QDT+  Q+E+I+ +   +    K    + R++F VGD  QS
Sbjct: 243 DLVRDYWHKRFQHVLVDEYQDTNRTQYELIKLITAGNTKPNKFCEWNNRSIFVVGDADQS 302

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IYSF  A+ + ++  +    K  +N  +K S+++L  ++RS+++IL   + +        
Sbjct: 303 IYSFRAADFRILIGFQEDF-KGPSNNDKKASLVKLEENYRSSSNILNAANSLIENNTERI 361

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 T                                +     S  D + +       
Sbjct: 362 DKVLKPTK----------------------------EEGELLKLLSCDDEISE------- 386

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  I   + ++        N        ++  +L R R  + ++          ++I   
Sbjct: 387 AEAITTKLRSL--------NNYNNQPIWRNFAILYRTRAQSRVLEESL----VRWRIPYT 434

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464
                   D   +KD +A  + +++  D++S + ++  P     +  I K+         
Sbjct: 435 IFGGLRFYDRREVKDAVAYLKVLVNSSDNVSLLRIINVPRRGIGKTTIQKLSDLSIKLNI 494

Query: 465 TVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            ++E I    +                  +++L+   +   P     LIL       + +
Sbjct: 495 PLWEVINDKQSLDETIGRSSKGINKFTDLMNDLLCYVENSGPAQILQLILEKSGYLNELL 554

Query: 519 SRFGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRI 574
                E  D    L E +N   + E+ + +    +   L     T        + N V +
Sbjct: 555 RSGSEESEDRRNNLQELINAATQFEEETEN--ANVEGFLSTAALTTDNDTKKNHPNSVTL 612

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H +KGLE   VF+      +F          +                         
Sbjct: 613 MTLHNSKGLEFQNVFITGLEQGLFPSHRSIDTPSL------------------------- 647

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                     EE  RL YVG+TRA +++ +             + T   +       +  
Sbjct: 648 ---------LEEERRLCYVGITRAKERVFLSHARERRLWGGMREPTIPSIFLSEIPEELI 698

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
             ++  +   +       +  T    N   E
Sbjct: 699 DGELPQSGGASIRRDRHLDRLTRVDRNNSNE 729


>gi|121998060|ref|YP_001002847.1| exodeoxyribonuclease V subunit beta [Halorhodospira halophila SL1]
 gi|121589465|gb|ABM62045.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Halorhodospira
            halophila SL1]
          Length = 1240

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 135/1010 (13%), Positives = 294/1010 (29%), Gaps = 149/1010 (14%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSME-TGNPTILKKAQTLQQASQT 59
            L  R G + +++ E +            ++        +  T      +  + +   +  
Sbjct: 231  LAERLG-AWHQALEQLKAPWRDEREAVEAEFLDLHRRVLNGTKYKNPQQLLERMAAWAD- 288

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK-----EKLKKSQDEFIKIRDRF 114
                          LT K  P   ++ +       D       + L  S     K  DR 
Sbjct: 289  -------DPAQPVPLTDKGKPDPGLLERMSATGLADPSRHKKGQSLPASLHRAFKALDRH 341

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                           A+++   ++  +++   L F+DL+    D L+    +  +   I 
Sbjct: 342  VELD-APGVAILRAAARWITRRFQAEQRRRAQLGFQDLLTRLRDALRGPGGAR-LAQTIR 399

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +    LIDE QDT  +Q+E+  ++          +     LF +GD KQ+IY F GA+ 
Sbjct: 400  SQFPVALIDEFQDTDPVQYELFETVYR-----IADNDPGLGLFLIGDPKQAIYGFRGADI 454

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               LR +            +     LP +FRS+  ++  V+++F+  E +      +   
Sbjct: 455  HSYLRARAA---------TEGRHYTLPRNFRSSEALVGAVNQLFARAEGSWPAGAFAFRG 505

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                          Q   +   +  ++             S+ + +     A   A  I 
Sbjct: 506  -GSGGGLPFHPVEAQGRGEFFEEAGAEHPALNLWCHDPGVSVAKNAYLPTYAEACAARIV 564

Query: 355  NMIGTDTIFSN--------GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             ++                G    ++ +D+ VLVR   +   I       +     SV  
Sbjct: 565  ALLNGGAARPAVTGFRHPGGHLEPVRPRDMAVLVRNHTEASAIQEALAAREVR---SVYL 621

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
            +DR  +       DL+   R      D+      L +P    +  ++ ++ T        
Sbjct: 622  SDRDSVLATAEADDLVRWLRACAEPTDEGLVRAALATPTLGLALSELDRLVTD------- 674

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
                          ++  I+   E   + +          +L      Q+ ++  G E  
Sbjct: 675  -----------ELAWERRIEQFGEYRRLWRSRGVLAMLHRLLHDFGVPQRLLAISGGERS 723

Query: 527  ----DVLDEFLNF-TLRN--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                  L E L      +  EQ     L EL  +             ++ + V+++T+H 
Sbjct: 724  LTNLLHLAELLQQWAREHDGEQALIRHLVELRQQARNGVEDQILRLESDEDLVKVVTIHK 783

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            +KGL+ P+VFL    +             + + +    +P    + + R  +  + ++  
Sbjct: 784  SKGLQYPLVFLPFVCT----------FRPVTARDAPRRVPDQHGRLRWRFELDQEDVEAA 833

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN------------------QRTW 681
                  E  RL YV +TRA     +     T    K +                      
Sbjct: 834  DSERLAEDLRLFYVALTRAQHACWVGMAPITQGNTKRSLLERSAAGYLLAGPDGVEPGGL 893

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              ++  +   D  +   +                       P  R      +     + +
Sbjct: 894  GAVLEQAAAADPAITVSEPLLDEASRFVGDPAAPPLGEPCQPRRRAADAWWIASYSALVR 953

Query: 742  ------KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV--- 792
                     +P     +     +   +  +   +  S     +  + G  +H LL+    
Sbjct: 954  HDTAGRARSAPASAAEDVLREESGHALVQEAGGDAGSWHGFPRGPDAGTFLHNLLEWAAT 1013

Query: 793  -IFTLPEHKRKNFITSYCTKNAKL-WPAKEYKNLLLSITRLLENPM--------MTTAMS 842
             +       +  ++ +   +  +      +   +   +  LL   +        +     
Sbjct: 1014 QLGLATAGAQPEWLDAEVERRCRFRGWDGQVATVQGWLRALLGAELSLPGAQTTLALGRL 1073

Query: 843  CDSYSEVSVSG-------------------------KINCPKKDIIISGRIDQISISQQN 877
                +E+                              +   + + ++ G ID +   +  
Sbjct: 1074 PTYQAELEFLIETQPLRADRLDDLVCQHLLPGRARPPVAPARLNGMLKGFIDLVCCHEGR 1133

Query: 878  IFIFEYKTHHHVPQE---------IEHIPYTHIAQLSIYEKILKDSYPNK 918
             ++ +YK++     +          E +   +  QL IY   L      +
Sbjct: 1134 YYVADYKSNWLGGGDGHYAPEYLEAEVLERRYDLQLVIYTLALHRLLRAR 1183


>gi|282880688|ref|ZP_06289390.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281305414|gb|EFA97472.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 1076

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 127/857 (14%), Positives = 282/857 (32%), Gaps = 79/857 (9%)

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
            + N+    + + + +L + L+ ++ +   +   + T  +    L  L L   +     E 
Sbjct: 296  KTNLKDPRLYQLATELTQLLENAEKKRRAMIKPYRTADLILKNLNQLRLLSSIENKVREL 355

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
              +       D     ++L+ + D S +I  KI  +++HI+IDE QDTS +QW+  + L 
Sbjct: 356  NDEGNNFLLSDTQTLLHELIDQND-SPFIFEKIGTQLSHIMIDEFQDTSTVQWKNFKILL 414

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            ++    ++T+S       VGD KQSIY +   + + +   ++           +  I  L
Sbjct: 415  QETMSHQDTNS-----LIVGDVKQSIYRWRSGDWRLLNNIEQEF-----APSHQLKIEPL 464

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              ++RS   I+   +  F I    +     ++ T      +      VQ           
Sbjct: 465  DTNYRSEHHIVNFNNHFFEIAAQQEYEELVASQTQGAEQMQKAYADVVQKI--------- 515

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                + +         P+E         I +TI  ++      ++          I +LV
Sbjct: 516  -HKSKDKHGCVRIKLFPKEQYNETTIDEIIHTIQLLLDNGAKENS----------IAILV 564

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R + +   I  +         I +V ++ F L    A+  L+     +   ED L+   +
Sbjct: 565  RNKANIHDIADVLMQAMP--HIKLVSDEAFRLDSSSAVNILVDALHCLTHPEDQLTVANL 622

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
             K+            +     + + + +    +              +            
Sbjct: 623  AKTY-------QTQVLNHDLGDDDLLIQGKDIWDFLPKQYVLEAKALL--------SLPA 667

Query: 501  HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
             D    +          +S   N+    +  F +   +   ++ + +   I++  +    
Sbjct: 668  MDLVERLYALFD-----LSSLKNQS-AYVCAFYDVLSQYISDNIAEIDSFINQWNETLHE 721

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                     + +R++T+H +KGLE   V +     ++   K +     +   N+ P IPI
Sbjct: 722  KTIQSD-GIDGIRMLTIHKSKGLEFDHVIIPFCDWKLEKEKTLWCKTDVAPFNELPVIPI 780

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
               + K + +   D  ++       +   LLYV  TRA   L I         +      
Sbjct: 781  TFNEGKMQESYFEDSYQYEHLQNVVDNMNLLYVAFTRACKSLFIFGQRKVQARRSKIIED 840

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
              + +++S  +      +   + +    +             P E E    + +    I 
Sbjct: 841  SLEKLHESLSDSRLEGDMNKRDDVLCFSYGEL--------WVPSEEETKFSENVFFSPIE 892

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
             +    +K+  N       +   T          +       G ++H L   I       
Sbjct: 893  TQSVE-MKSYGNSVEFRQSNQSRTFTLPETNEDTTQQSYIQLGNVLHMLFSKI--KTTSD 949

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCP 858
                +     +         ++ L   + + L NP +    S     Y+E S+       
Sbjct: 950  IPTILRELEFEGVLYDNIITHEKLQQLLEKRLNNPKVAEWFSPQWELYNECSIIHTNPIT 1009

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             +  +++ R D++ +    + + ++K     P+        +  Q+  Y  +L+    + 
Sbjct: 1010 GE--VMTHRPDRVMMQGDKVVVVDFKFGKPHPE--------YHDQIREYIHLLQQM-GHT 1058

Query: 919  SLVCLLIYVSEPKVFII 935
             +   L +V    +  I
Sbjct: 1059 QVTGYLWFVYSNLIEEI 1075


>gi|227822621|ref|YP_002826593.1| DNA helicase II [Sinorhizobium fredii NGR234]
 gi|227341622|gb|ACP25840.1| DNA helicase II [Sinorhizobium fredii NGR234]
          Length = 871

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 112/723 (15%), Positives = 204/723 (28%), Gaps = 164/723 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+         DF DL+++   + +       +      +  +IL+DE QDT+ 
Sbjct: 211 RELYVAYQNRLLTLNACDFGDLLLHPIRMFRANPD---VLKDYHDKFRYILVDEYQDTNT 267

Query: 191 IQWEVIRSLTEDFFVGKNTHS--------------------------------------- 211
            Q+  +R L +     +  H                                        
Sbjct: 268 AQYMWLRLLAQRPQGAREKHPSPPPPHKGEGQERVAASRSPSNLVEERLSAPQASPSPLW 327

Query: 212 ------------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                           +  VGD+ QSIY + GAE   +LR ++              +I+
Sbjct: 328 GGVGEGKSREEKPRVNICCVGDDDQSIYGWRGAEVDNILRFEKDFP--------GAKVIK 379

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RST  IL     + +  E   G +  +                            
Sbjct: 380 LERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDR-------------------------- 413

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
           S  + ++    + +DS  +       AR +   I  +            R     DI +L
Sbjct: 414 SHPDDEKVHVHAAWDSEEE-------ARAVGEEIEQLQR----------RKHNLNDIAIL 456

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           VR              L     ++          + L I+D MA  R +    DDL+F  
Sbjct: 457 VRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFER 512

Query: 440 MLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQHVIKYIHELI 492
           ++ +P     +  +  +    R     +           +           V+       
Sbjct: 513 IVNTPKRGLGDTTVRNLHDYARARDIPMLAAATEIIETDELKPKARKALFDVVTDFRRWQ 572

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQE 549
            + +     +    IL        + +    E    ++ L E +      E         
Sbjct: 573 TLLETTPHTELAEQILDESGYTAMWQADKSAEAPGRLENLKELIRSMEAFES-------- 624

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           +   LE     +    + N + V IMT+H+AKGLE   +FL      +F H+        
Sbjct: 625 MRGFLEHVALVMDAEQNENMDAVSIMTLHSAKGLEFDTIFLPGWEEGLFPHQR------- 677

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                     +    ++  EE  RL YVG+TRA  +  I   SN
Sbjct: 678 -------------------------ALDEGGRAGLEEERRLAYVGITRAKRRCHIWFVSN 712

Query: 670 TSNEK---KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                    +    + D +                 +        ++ +           
Sbjct: 713 RRIHGLWQTTMPSRFLDELPIDHVEVAEQDVSYGGYNRGGYGQSRFDKADPFENTYQTPG 772

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLSDNQTFNRG-L 784
            +  +Q   E                  Y  + P T   +G+   +S  ++   FN G  
Sbjct: 773 WKRAQQHRTEATRDNWGTRSGHAVERIGYGESGPRTRTIEGELVAKSTTAEPSRFNVGDR 832

Query: 785 IIH 787
           + H
Sbjct: 833 VFH 835


>gi|298484682|ref|ZP_07002785.1| ATP-dependent DNA helicase Rep [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160822|gb|EFI01840.1| ATP-dependent DNA helicase Rep [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 669

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 99/608 (16%), Positives = 200/608 (32%), Gaps = 120/608 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  +  HY+   K    +DF+DLI+    L ++    A I  K   ++ ++L+DE QD
Sbjct: 162 QTAAIVYTHYQRTLKAYNAVDFDDLILLPVKLFQEH---ADILEKWQNKVRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L            S      VGD+ QSIY++ GA P+ ++  K      
Sbjct: 219 TNASQYLLVKLLIG----------SRHQFTVVGDDDQSIYAWRGARPENLMLLKDDYP-- 266

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST+ IL   + + S   +A                       
Sbjct: 267 ------SLKVVMLEQNYRSTSRILRCANVLISNNPHAFEK-------------------- 300

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            QLW ++    +                + +  +    A R+A  I  +           
Sbjct: 301 -QLWSEMGHGDEI--------------RVIRCRNEDAEAERVAMEILTLH---------L 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +      D  +L R      LI        + +++    +          +KDLMA  R 
Sbjct: 337 RTDRPYSDFAILYRGNYQAKLIELKL----HHHQVPYRLSGGNSFFGRQEVKDLMAYFRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           +++ +DD +F+ ++  P        + K+         ++Y   ++        +    +
Sbjct: 393 LVNPDDDNAFLRVINVPRREIGSTTLEKLGNYATERKVSMYAATEEIGLGEHLDSRYTDR 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
            Q   +++  +        P      ++              +E      +  +   +  
Sbjct: 453 LQRFKRWMDGVRQQCAQNDPIAALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEA 512

Query: 536 T---LRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
               L  ++    +++E I +L       ++    +    V++MT+H +KGLE P VF++
Sbjct: 513 LKNTLEKDEEGGMTIEEAIGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIM 572

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      ++  T EE  RL 
Sbjct: 573 GMEEEILPH-----------------------------------RSSIEADTIEEERRLA 597

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA   L     +      +         + +   +D   +    T +  K     
Sbjct: 598 YVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGN 657

Query: 712 YEWSTHHP 719
              +    
Sbjct: 658 TALADIRA 665


>gi|255319694|ref|ZP_05360902.1| exonuclease V, beta chain [Acinetobacter radioresistens SK82]
 gi|262380024|ref|ZP_06073179.1| exodeoxyribonuclease V, beta subunit [Acinetobacter radioresistens
            SH164]
 gi|255303223|gb|EET82432.1| exonuclease V, beta chain [Acinetobacter radioresistens SK82]
 gi|262298218|gb|EEY86132.1| exodeoxyribonuclease V, beta subunit [Acinetobacter radioresistens
            SH164]
          Length = 1234

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 125/932 (13%), Positives = 271/932 (29%), Gaps = 140/932 (15%)

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKS-PDLKEKLKKSQ-----DEFIKIRDRFNTYKMFK 121
             L +   T  F    ++ T+++  K   ++ E  +  Q       F +      T     
Sbjct: 294  ALFAAHWTDIFKCITDLATKKVLNKCSAEVLEYFENHQIIQGLRRFCECVANLKTDLSRL 353

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             T     +++ +     +  ++     F   I    + L+  +        +      I+
Sbjct: 354  DTYLQFYISQEVRKRLPQLLQQRGETTFSQQIRTLAEALQG-EQGQRFAVYVQARYPLIV 412

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT+  Q  ++ S+                +  VGD KQ+IY F G +        
Sbjct: 413  VDEFQDTNQDQDNMLASIWR-----HPQRHQHSCMIMVGDPKQAIYGFRGGD------ML 461

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               + R     ++  +  L  + RS  +++ VVD +F    N      +       ++  
Sbjct: 462  TYIKARQDVLIKQGKLYTLRQNHRSVPELVEVVDALFQREVNFG----EEVIYTPIQAGA 517

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                               + N     W    D   +       A ++A+ I  ++    
Sbjct: 518  RQHPPLTDR---------QRKNYCPLRWVQLSDKNKE-------AEQVAWKIRQLLNHGI 561

Query: 362  IF-----SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                    +G +R +   DI +L +         +    L     I V    +  + D  
Sbjct: 562  AKELLFDESGGQRPLNENDIAILSKNHDGLDKAQYALESL----GIRVNRPSKRSVFDCQ 617

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
              +D+ AL   I+   D+      L S L +F+   + ++  +                 
Sbjct: 618  VARDVGALLTAIMHPYDEGKVKRALLSRLLDFNLQSLVELEQR----------------- 660

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFL 533
                    I    ++  +         +   L   +  Q+ ++    +       L    
Sbjct: 661  -TDGLSSFIHKFDDIRELWLERGFLSAWQYCLQHFQVWQKLVAIASKDNERAVVNLRHLT 719

Query: 534  NFTLRNEQNSY--SSLQELISELEQYPPTIKRAHS---ANHNEVRIMTVHTAKGLESPVV 588
                ++ +      +L     +  Q P   +       +N   V++MT+H +KGLE  VV
Sbjct: 720  EVLSQHSEIYPGAKNLYYWYFKQLQSPSEREWELERRLSNEAGVQLMTIHQSKGLEFKVV 779

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLN--DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            FL+                 +  LN          +     +N +  + +   ++    E
Sbjct: 780  FLLGADKAFKEMNKTLNFSTVEQLNPVTGQLEKQRVIAVADKNLLDENAVNQHQERAAAE 839

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---RTWYDMVYDSFHNDERVKKIKLTNS 703
              RL YV +TRAS ++           + S           V+    ++  ++++    S
Sbjct: 840  NRRLWYVALTRASHRVYAMLQDTEGKARHSLAFWRNRAEPFVHPHCMDEPLLEQLPAKVS 899

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN----- 758
             +         + + P+     R +T    + +    +K+F P+ N++  P         
Sbjct: 900  ASSVSKQISVQALNLPQQRFYPRAKTSFSYLAQHLKTRKIFDPLANEVKRPESAEDELHV 959

Query: 759  PSTIDTKGKTNLESLLS-DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                       L  +          G  +H++ + I           I      +     
Sbjct: 960  VDKAYLPATQPLSWIKQNFPMGTVAGNFLHEIFEHIDFQEPADWILEIRRRFKNDYSGLW 1019

Query: 818  AKEYKN------------------LLLSITRLLENP-----MMTTAMSCDSYSEVSV--- 851
             +                      L   + ++L  P      +         +E      
Sbjct: 1020 NELRDKYQRDFPEQAEDEQLLLNWLAEWLQQVLGTPLHAGFELKHLQPEQHLAEFPFCLA 1079

Query: 852  ---------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
                                   ++N  +    ++G ID +        I +YK++    
Sbjct: 1080 LSDHVLAIQRIHQLFAEYGIDMPELNPAESARYLNGSIDLVYFDGHQYHIADYKSNFLGN 1139

Query: 891  QEIEHIPY---------THIAQLSIYEKILKD 913
             + ++            ++  Q  +Y   L  
Sbjct: 1140 DQSDYNHASIRASMSHSSYWLQAGLYLVALHR 1171


>gi|223934306|ref|ZP_03626227.1| UvrD/REP helicase [bacterium Ellin514]
 gi|223896769|gb|EEF63209.1| UvrD/REP helicase [bacterium Ellin514]
          Length = 689

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 104/614 (16%), Positives = 191/614 (31%), Gaps = 136/614 (22%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
           +     +  +   +A+++   YE A +    +DF+DLI+ T  L ++   +         
Sbjct: 158 SQAAAFADESIKAMAEHIRTRYESALRACNAVDFDDLILLTLRLFEEHPDA---LEACRN 214

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
              +I++DE QDT+  Q+ ++  LT++           R L  VGD+ QSIY + GAE  
Sbjct: 215 RFRYIMVDEYQDTNASQFSLVHYLTKE----------HRNLCVVGDDDQSIYGWRGAEIS 264

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +L  ++   +          +++L  ++RST  ILT  + V       +G    S    
Sbjct: 265 NLLDMEKHFPE--------VKVVKLEQNYRSTNVILTAANAVIKNNLRRRGKQLWSD--- 313

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                  GQ   + L                              S    A+ I   I  
Sbjct: 314 ------KGQGTKITLHTF--------------------------ESDEAEAKAIVEQIE- 340

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                          I      +L R    +  +    R      ++           D 
Sbjct: 341 --------FKRLASRIPWSQQAILFRTNIQSRALETALR----QGQVRYHLIGGQSYFDR 388

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQK-- 472
             IKD +A  +  ++  DD+S + +   P    S+  + ++         +VYE ++   
Sbjct: 389 REIKDFLAYLKLFINPNDDISLLRIANVPARGLSDVTMERLLAASHERKCSVYEAMKNPM 448

Query: 473 -------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNE 524
                       I +F   ++     +   Q  S   +    L      ++        E
Sbjct: 449 VTTSFLTRTRESIEEFVKFVEETRAPLSSGQSMSLKVWAEKFLTETGYLEELRRSEKTAE 508

Query: 525 VIDV-LDEFLNFTLRNEQNSY-------------------SSLQELISELEQYPPTIKRA 564
             D  +    + T   +++++                     LQ  + EL       K  
Sbjct: 509 AADNRVRNLKDLTGILDEDNHTIVAGPDGTHQPVLTNDPADRLQTFLEELTL-DSERKEE 567

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             A    V ++T+H+ KGLE P V++V     +  H   K                    
Sbjct: 568 KEAQGEAVTLITMHSCKGLEFPHVYIVGLEDGLLPHSRSKV------------------- 608

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                           + T +E  RL YV +TRA   L I   +      +         
Sbjct: 609 ----------------EGTLDEERRLFYVAITRAMQTLTISYCTGRKKYGQVMPCHPSGF 652

Query: 685 VYDSFHNDERVKKI 698
           + +       +   
Sbjct: 653 LKELPEELVELGDE 666


>gi|254374203|ref|ZP_04989685.1| hypothetical protein FTDG_00366 [Francisella novicida GA99-3548]
 gi|151571923|gb|EDN37577.1| hypothetical protein FTDG_00366 [Francisella novicida GA99-3548]
          Length = 671

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 102/617 (16%), Positives = 192/617 (31%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 138 QAKISFWKSALLTPDEVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 198 ---SNIQKLWADKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G++P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSKPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 297 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 321

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 322 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        I K+     + 
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATIHKLGEHASQH 428

Query: 464 ETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +        +  +            I           S  +        +     
Sbjct: 429 HCSFFHTLYSLENFELRDFTKKNLVSFKDLILNTQQQINTSISVQELKNIINSFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 634 IDELPETDLYWVGTEKE 650


>gi|209973035|ref|YP_002300482.1| putative UvrD-type helicase [Bacillus phage SPO1]
          Length = 703

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 92/587 (15%), Positives = 190/587 (32%), Gaps = 125/587 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YE+ K + CV+D +D++     L K+      +  +  ++  ++L+DE QD + +
Sbjct: 212 EFYKRYEKKKVEECVIDGDDMLYLLWWLFKQHPD---VLARYQKKFKYLLVDEAQDNNGL 268

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E+I+ L                LF VGD+ QS+YSF GA+P+  +   +         
Sbjct: 269 QYEIIKML----------GKPENNLFLVGDDDQSMYSFRGAKPEEFIDFTKTY------- 311

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +    I +  ++RS   IL V + +    +             +  +++      V   
Sbjct: 312 -KGAQQISMEDNYRSNPHILEVANNLIKNNQKRL--------PKKLVANKQNDETCV--- 359

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                  S     S    A+++   I   +              
Sbjct: 360 -----------------------SFEVHESEIEEAKKVVEEIKLQVEQGGK--------- 387

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             KDI +L R    +  +            I  V +      +   IKDL+   R +   
Sbjct: 388 NPKDITILYRTNAQSRALEDYL----IISGIPYVIHGGTSFYERKEIKDLICYLRLVADS 443

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG----ISKFQHVIKY 487
            DD +F  ++ +P     +  + K+   +    + +E I + +              +  
Sbjct: 444 NDDEAFKRVINTPSRYLGKAFMEKV---KRFDGSHWEAITEPSMSWKNYEQKGINEFVDL 500

Query: 488 IHELIHIAQF-------CSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFT 536
           + EL  +A+         SP +    +L     ++   +   ++     ++ ++      
Sbjct: 501 VEELKSVAEHGAGDFGEGSPTEVIDYLLDNC-YKKHMSNELTSDDFSSRMENVETLKFVM 559

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            +++     S++  +  +       K       + V++MT+H +KGLE    F++     
Sbjct: 560 EQHD-----SIESFLKHISDLMSQAKHDI----DGVQLMTIHKSKGLEFDTAFVIGVSEG 610

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              H                                 +     +K   EE  RLLYV +T
Sbjct: 611 CLPHFRAI-----------------------------ESYNDGRKQAIEEERRLLYVAIT 641

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           RA     I        +     R   ++  +          ++  + 
Sbjct: 642 RAESVCHISAPKTFLGKPAPVSRFSKELGIEILDMSGTDVDLEDADV 688


>gi|194336513|ref|YP_002018307.1| exodeoxyribonuclease V, beta subunit [Pelodictyon phaeoclathratiforme
            BU-1]
 gi|194308990|gb|ACF43690.1| exodeoxyribonuclease V, beta subunit [Pelodictyon phaeoclathratiforme
            BU-1]
          Length = 1199

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 125/1010 (12%), Positives = 272/1010 (26%), Gaps = 190/1010 (18%)

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
            +    +     + F       L       K+   + +    P                 +
Sbjct: 261  MDAFVEGGNAYDLFESFPKLTLEGILEGTKS---KGVAPSHPFFLS-----CQRLQDAVE 312

Query: 113  RFNTYKMFKSTLASLTLAKYLNAHYEE----AKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            R             L L   L   Y++     K+   +  F+DL+ +    L        
Sbjct: 313  RR-----------LLALKAELLRFYQKNLPLRKRIGNIRFFDDLLEDLYHALLPEQGGDA 361

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +   I ++    LIDE QDT   Q+E+ RS+           +S   LF +GD KQ+IYS
Sbjct: 362  LAEIIRKKYCAALIDEFQDTDRQQYEIFRSIYA---------TSGLPLFLIGDPKQAIYS 412

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F GA+    +R  R   +             L  ++RS+  +L   + +F+         
Sbjct: 413  FRGADIFAYIRAAREVGEE--------RRFTLTENWRSSPLLLQAFNTLFNNTMRPFLHD 464

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
            E     +             +  +      +       +S       L  + + +  +  
Sbjct: 465  EILYHPL------ASGKSEPERADGAGEDLEPMQLWLMDSSDEKSGMLTVDDAGAWASTA 518

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +A  I  ++       +G  R   A DI V+VR  +   L+        ++  ++ V   
Sbjct: 519  VAGEIVRILQDGQTLFSG--RPCSAGDIAVIVRTHRQAALMLNAL----HNRGVAGVMRS 572

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
               +      +++  L   +    ++      L + L   S +DI +             
Sbjct: 573  NQSIFLSREAEEVRILLSALADPGNEPKVRAALVTDLLGRSGNDIERFHDDEASWIAC-- 630

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
                         +    Y              +        +     +    G   +  
Sbjct: 631  ------------LRQFRLYHELWHERGCMVMSRELMAK-EEVRGRLLSYPDSSGERRLTN 677

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQ------YPPTIKRAHSANHNEVRIMTVHTAKG 582
            L        R E    + ++ L++   +           +     +   V+I+T+H +KG
Sbjct: 678  LLHCFELLHREEHERGTGMEGLVAWFSERTGAADETDEYQIRLETDDAAVKIVTIHVSKG 737

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PVVF        +   + K   +M   +    +          ++      +   K 
Sbjct: 738  LEYPVVFCPFL----WGGGNRKGEVLMFHDDAGHLV------KDFGSSGYESNRRLADKE 787

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------------------------SNQ 678
            +  E  RLLYV +TRA  +  +      S                            S  
Sbjct: 788  SLAESLRLLYVALTRAKYRCYLFSGKTRSENSPINYLLHASSATRVSENQASALAVESKT 847

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
             T   M        E  ++      + ++        +     +  +             
Sbjct: 848  LTTGMMAEQLESLAESSEESIGFTLLTREAVDGMARLSRTDRESQHDALVLRHFSGTIDT 907

Query: 739  IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL-----------LSDNQTFNRGLIIH 787
              +       +         P   + +    + S             +  +    G+ +H
Sbjct: 908  TWRVSSFTSFSRHEPISTELPDRDEPQADGGVPSAIVAPAGHEKSIFTFPRGAQAGIFMH 967

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSITRLLENPM--------M 837
             + + +        +  I     K  + +    +   ++   I  +LE P+        +
Sbjct: 968  GIFEKLDFASPS--ETAIHELVAKGLERYNYKEEWQPHITAMIHNVLETPLASRDSLFTL 1025

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDI-------------------------------IISG 866
                     +E+     +                                      ++ G
Sbjct: 1026 GALCQKSWITELEFFFPLRFINSSHLAGLLLRHGLLRSGVDLASLAPMLQFSPVRGMLMG 1085

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILKDSYPN 917
             +D +       ++ ++K++H    E ++             +  Q  +Y   L   Y +
Sbjct: 1086 FMDMVFEQNGRYYLLDWKSNHLGNSEEDYAQDAMSVAMQKHLYPLQYLLYTVALNR-YLS 1144

Query: 918  KSLVCL----------LIYVSE---------PKVFIIPQNKLNKAFAEIS 948
              +              +++                +P  +L +A   + 
Sbjct: 1145 LRVKNYRYSTHFGGVIYVFLRGVNREHGENFGFFRDLPPEELIEALTNLL 1194


>gi|325273681|ref|ZP_08139889.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. TJI-51]
 gi|324101185|gb|EGB98823.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. TJI-51]
          Length = 669

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 95/634 (14%), Positives = 204/634 (32%), Gaps = 125/634 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  +        A  +  HY+   K    +DF
Sbjct: 129 DDGIDEIKNMIGAWKNDLILPPEALEKARNPRE-----QTAAIVYTHYQRTLKAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  +    + ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILQPVKLFQEHPE---VLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGM------- 233

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                    VGD+ QSIY++ GA P+ ++  K               I+ L  ++RST+ 
Sbjct: 234 ---RNQFTVVGDDDQSIYAWRGARPENLMLLKEDYP--------SLKIVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + +   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLIANNPHAFEK---------------------QLWSEMGVGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCKNEEAEAERVAMEILTLH---------LRTNRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +++ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +             + Q    ++  +        P  
Sbjct: 415 STTLEKLGNYSTERGISMYAASDELGLGEHLDARYTERLQRFKHWLDGVRQKVALEDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDV---------LDEFLNFTLRNEQNSYSSLQELISE 553
               ++           +  ++             +D   N   ++E+   +    +   
Sbjct: 475 ALHEMIRDIDYENWIRQQTASDKAADFRISNVWFLVDALKNTLEKDEEGDMTIEDAIGKL 534

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           + +     ++    N   V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            +    T    + +   +D   + +       K 
Sbjct: 620 GEIIDCTPSRFLDELPPDDLAWEGLDDAPVEVKA 653


>gi|323499832|ref|ZP_08104791.1| exodeoxyribonuclease V beta chain [Vibrio sinaloensis DSM 21326]
 gi|323315073|gb|EGA68125.1| exodeoxyribonuclease V beta chain [Vibrio sinaloensis DSM 21326]
          Length = 1206

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 141/988 (14%), Positives = 297/988 (30%), Gaps = 155/988 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +     K +W      +  +     ++  + +   L          Q           S 
Sbjct: 229  AAIDALKSVWLSHQEDLLALISDSDVNKRSYSKKSLPL------WLQAVSDWAASETTSY 282

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                Q     +N++ ++  K +P   E   +         + F    +            
Sbjct: 283  DIPEQLGKFAQNVLLEKTPKGNPPTHEVFAQ--------IEAFLAQPISLKAPILAHAID 334

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +      +AK +   L F+DL+ N        D S  +  +I       +IDE QDT  +
Sbjct: 335  HCRTMLAKAKDQKQWLSFDDLLTN-LSASIDGDESQLLAERIRTLYPVAMIDEFQDTDPL 393

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+ +   +          ++    LF +GD KQ+IY F GA+    ++ +       T  
Sbjct: 394  QYSIFSRIY--------LNNPECGLFMIGDPKQAIYGFRGADIFTYIKARNQVSSHFT-- 443

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                    L  ++RS+AD++  V+++F +P +     +D    I   +         ++W
Sbjct: 444  --------LGTNWRSSADMVAAVNQIFQLPSSPFIYDQD----IPFLAVNHSPKAEQRIW 491

Query: 312  EQVVSQHDSQCNPQQESWTSYFDS--LPQESSASILARRIAYTISNMI-----GTDTIFS 364
                     Q  P    W    +   LP+    + +A+  A  I  ++     G      
Sbjct: 492  TMA-----GQKQPALTYWLQECEEKPLPKGEYLTAMAKATADQIQTILTAAQNGEAHFEQ 546

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
              +++ IQA DI VLVR   +  ++      L      SV  ++R  +       D+  L
Sbjct: 547  GEQRQAIQAGDIAVLVRTGSEGRMVKE---ALALQGIASVYLSNRDSVFVSSVASDVQRL 603

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + +L+ E+D +    L S LF      + K+    +E E+     +++    +   + V
Sbjct: 604  LQAVLTPENDRALRACLASELFALDAGTLDKLNNDENEWESAINEFKEYRKLWLQ--RGV 661

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            +  +  +I              +L    G +             + E L        + +
Sbjct: 662  LPMLRSVISKRH------IAERLLEEAGGERTLTDLM------HIGELLQQATSELDSDH 709

Query: 545  SSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              L+ L   +              +   +  N V+I+T+H +KGLE  +VFL        
Sbjct: 710  GLLRWLAQAISDALNGLGGSEDQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFV----- 764

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                          ++         Q+          +    K    E  RL+YV +TRA
Sbjct: 765  --------LSYREASEAKYYDAEQDQTILDITKQDAALAQADKERLAEDLRLIYVALTRA 816

Query: 659  SDQLIICKHSNTSNEKKSNQRTWY-----------------DMVYDSFHNDERVKKIKLT 701
                 I      +          +                 D+      + + +  +  +
Sbjct: 817  VYGCFIGAAPLRNGRSSKEPTGVHHSAMGYLLQDGQQGGIDDLSQSIAKHVDGLDCVVCS 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETI---KQLMDEQKIPKKLFSPIKNDI-----NE 753
               N+         +  PE +  E  ++I    ++     + K+  S   ++        
Sbjct: 877  GLPNEHNAPLVIQESEQPELSARELTQSIDRNWRITSYSGLVKQGHSHAVDEALTDLMRL 936

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP---EHKRKNFITSYCT 810
                +    + +     +++ +  +    G  +H L + +         +    I     
Sbjct: 937  DVDSSGEQEEEELLEPEKTIFTFPRGARPGTFLHSLFEEVEFTQSACSEENSEVIRHLME 996

Query: 811  KNAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVSVSGKINCPKKDII- 863
                         L   +  +L  P      ++          E+     I       + 
Sbjct: 997  SE--QLEEAWLPVLQSLVDTVLATPLDGQSLLLNRKQPSQRLVEMEFLLPIEVLSSPALN 1054

Query: 864  ------------------------ISGRIDQISISQQNIFIFEYKTHHHVPQ-------- 891
                                    + G ID +       ++ ++K+++            
Sbjct: 1055 RVIQRHDPLSAKAGDLGFQTVQGMLKGFIDLVFEDSGKYYVLDWKSNYLGDDVSYYHGDA 1114

Query: 892  -EIEHIPYTHIAQLSIYEKILKDSYPNK 918
             +     + +  Q  IY   L     ++
Sbjct: 1115 LKAAMAEHRYDLQYQIYALALHRFLASR 1142


>gi|310766108|gb|ADP11058.1| ATP-dependent DNA helicase Rep [Erwinia sp. Ejp617]
          Length = 673

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 105/646 (16%), Positives = 213/646 (32%), Gaps = 121/646 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K++  Q +      L++ +    +    + D         S      L  +  A
Sbjct: 112 DQLALLKDLTEQWLENDKNLLQQLISTISNWKNDLMDPPRAAAGALSERD--KLFAHCYA 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K   VLDF+DLI+    L ++   +   R +  Q I ++L+DE QDT+  Q+E+
Sbjct: 170 LYDKHLKSCNVLDFDDLILLPTLLFQRNLEA---RERWQQRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++  +              
Sbjct: 227 VKLLVG----------ARARFTVVGDDDQSIYSWRGARPQNLVLLQEDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S                        
Sbjct: 269 QVIKLEQNYRSSERILKAANILIANNPHVFEKRLFS------------------------ 304

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                      E        +   +     A R+   I  +I    I         Q KD
Sbjct: 305 -----------ELGYGAELKVVTANHEDHEAERV---IGELIAHHFI------NKTQYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + +   +        +I    +          IKDL+A  R + + +DD 
Sbjct: 345 YAILYRGNHQSRVFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNADDDS 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++               G+   Q    ++
Sbjct: 401 AFMRIVNTPRREIGSATLQKLGEWAMQRNKSLFTASFDVGLGQTLTGRGLESLQRFTHWL 460

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQ--- 541
            E+  +A+        D    +       +   S    E  +  ++    +     +   
Sbjct: 461 QEIARLAEREPVAAVRDLIRGVDYESWLFETSASPKAAEMRMKNVNTLFQWMTEMLEGSD 520

Query: 542 -NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 521 IDEPMTLTQVVTRFTLRDMMERGESDEESDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       ++  EE  RL YVG+TRA  
Sbjct: 581 QSSLD-----------------------------------ENNVEEERRLAYVGITRAQK 605

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +L            +  +      + +   +D + +  +   S  +
Sbjct: 606 ELTFTLCRERRQYGELVRPEPSRFLLELPQDDLQWESERKVVSAEE 651


>gi|309390072|gb|ADO77952.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 677

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 183/576 (31%), Gaps = 111/576 (19%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                         + +     +   +   YE     N   DF DLI  T +LL+     
Sbjct: 153 LAADLTAEYAQAENQGSKHFYQIVSKIYQEYERVLANNNCFDFNDLIKKTIELLESNPA- 211

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             I  K   +  +I +DE QD +  Q+++I  L +              +F VGD+ Q I
Sbjct: 212 --ILTKYQNKFKYIQVDEYQDVNHSQYQLISLLAK----------PQNNIFVVGDDWQGI 259

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F GA+   +L  ++   +          +I+L  ++RS+ +I++  +K+ +     + 
Sbjct: 260 YGFRGADISNILEFEQDYPEAV--------VIKLERNYRSSNNIISASNKLINNNTQNKV 311

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                               +            + +  S  + A
Sbjct: 312 KEAW----------------------------TESDDGAPIF-------IAEAESPLVEA 336

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + +   I++++              +  DI +L R    +       +     ++I    
Sbjct: 337 KYVCKRINHLVD---------FYNYKLSDIAILCRSHFQS----MQLQKQLPKFRIPHQL 383

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET- 465
                  D   I+  +   + I++  D L+   + +  +    E  + +I     E +  
Sbjct: 384 VGGLSFFDRQEIRYFVNYLKLIVNPNDRLALKRLFRIEVHGVGEILLSEITKYARENKMK 443

Query: 466 ---VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF-----FTLILGAKKGRQQF 517
              V+E        G +K  ++I++   +I                   +       Q  
Sbjct: 444 ITDVFESPTVVKGIGNNKAANIIEFQRRVIDSIYDLREEKLPMDKKALELYQRVDFEQNV 503

Query: 518 ISRFGNE--VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRI 574
           ++   +       L+ FL       +N+    + L   L        +  S N   +V++
Sbjct: 504 LAELDDPEGRKRYLNMFLEDISNFRKNNPG--RGLYDYLLINKLIADKDISENKEQKVKV 561

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT H+AKGLE PVVF++    +VF H                               +  
Sbjct: 562 MTAHSAKGLEFPVVFIIGAEEEVFPHLKS----------------------------LEA 593

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
               L     EE  RL YV MTRA   L I      
Sbjct: 594 KEAGLNPYAVEEERRLFYVAMTRAEKLLFISFAKTK 629


>gi|297565832|ref|YP_003684804.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
 gi|296850281|gb|ADH63296.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
          Length = 900

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 134/961 (13%), Positives = 295/961 (30%), Gaps = 129/961 (13%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDIN-KYVSLSMETGNPTILKK----AQTLQQAS 57
           +   + + E+ E +      L +        ++     E    T+        + L++ +
Sbjct: 44  DELRVRVGEALEDVLSTGCHLDFVCDPVSRPRFEEARRELSGATLTTIHGFMIECLRRTA 103

Query: 58  QTQCIEERFSLL----SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
               ++  FSL+    +  F        ++++    +   P   +   +  D  + +  +
Sbjct: 104 PLLSLDPDFSLIGDWEARAFF---EEEWRSLLYLSSDPAHPLFGQAKPEMGDALLHLFAK 160

Query: 114 FNTYKMF-----KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            +    +     +     + + + + A+Y      + +L   ++     +L         
Sbjct: 161 RSLALSYTPSPGEENAVLVKVYQAVFANYSRRL-GSSLLSPSEVERRALELTANPLA--- 216

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
              ++      +L+DE QD + +Q E  R+L           S+   + AVGD KQSIY+
Sbjct: 217 -LGRLLDRYRAVLVDEFQDVNPVQGEFFRAL----------ESAGLPIEAVGDPKQSIYA 265

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F  A+ +   R     +              L  ++R +  ++  ++++      A GL 
Sbjct: 266 FRDADVEVFRRALAEGEVLPP----------LATTYRHSRILVRFLNRLTEKL-AALGLG 314

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                       R    G +++          +                     +  A+ 
Sbjct: 315 FGPEEAPPVEGVR-EVQGRLEVHWVEGEVTLDEL-------------------RTFEAQI 354

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  +  +              +   ++ VLVR R     +            +  V   
Sbjct: 355 LAERLRAL-----------SERVDPSEMAVLVRSRNSFAFLEEAF----GRLGLPYVLLQ 399

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                + L ++DL    R  L     LS    L+SP       ++ +I         +  
Sbjct: 400 GRGYYERLEVRDLYHALRVALDPR-GLSLAAWLRSPFGGLGLSEVEQILRSDDPLALL-- 456

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA-KKGRQQFISRFGNEVID 527
                     ++F  V   +  +        P +    ++ A   G + ++        +
Sbjct: 457 ---------QAEFPEVYARLRLIQQTVSQSKPLEALKFLVRAPIIGGRAYLDHLQARSRE 507

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESP 586
            +D  L           S L+ L+  L+             +   V+++TVH AKGLE P
Sbjct: 508 NVDALLFQVAA---RPPSGLEVLLERLQLLSHQAEAGDVPQSGEGVQLLTVHAAKGLEWP 564

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VV + D G +   H               P                 +L    K   + E
Sbjct: 565 VVAVFDLG-RRNPHLSQPAYLGPDGTVALP-----------ETPFFDELRAQAKAREEAE 612

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RLLYV  +RA D L++       N        W +++       E     +       
Sbjct: 613 SYRLLYVAASRAKDVLLLTGSVKAGN-----PEGWAEVLAKVGFGPEARFFDRSDYVQRS 667

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +     S              ++++ +   +P        + +     L         
Sbjct: 668 WNYRPLPPSGPPAPRPAPVAPPWLERVFEPLPLPPLF---SPSALKRQADLRGEHEPLPL 724

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
               E      ++   G ++H  +            +  T    +    +   E +++L 
Sbjct: 725 PDLEEGEEVPGRSRALGTVVHTAIAQ--GWDPDYPAHLATLEAQEVMFPFDPAERESILA 782

Query: 827 SITRLLENPMMTTAMSCDS---YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
               LL   +    +  +      E      +  P    +  G +D++    +  ++ +Y
Sbjct: 783 EARELLR--VYQALLGKELPWPRDEDYPELPLALPGGSTVWQGVMDRLYRVGEEWYLEDY 840

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
           KT H      E +P  +  QL++Y + +++ +        L+++   +V  +    L +A
Sbjct: 841 KTDH------EVLPERYYFQLALYRQAVREVWRVDP-RVRLVFLRCAQVVELEPGVLERA 893

Query: 944 F 944
            
Sbjct: 894 L 894


>gi|295698460|ref|YP_003603115.1| DNA helicase II [Candidatus Riesia pediculicola USDA]
 gi|291157481|gb|ADD79926.1| DNA helicase II [Candidatus Riesia pediculicola USDA]
          Length = 651

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 101/563 (17%), Positives = 185/563 (32%), Gaps = 122/563 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++    + ++DF +L++   +L       + +     +   H LIDE QDTS +Q
Sbjct: 171 IYLTYQKICDHSGLVDFPELVLRAYELFLNN---SSLLRLYQRRFTHFLIDEFQDTSKLQ 227

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++ IR + +              +  VGD+ QSIY + GA PK +    R          
Sbjct: 228 YKWIRMIFQ----------KSVGITIVGDDDQSIYGWRGANPKNMKYFLRDFPNS----- 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              ++I L  ++RST +IL   + + S  +N  G +                     LW 
Sbjct: 273 ---TVIRLEQNYRSTKNILKSANALISYNKNRLGKT---------------------LWT 308

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
           ++                   D L +          I   I                  +
Sbjct: 309 KIEF-------GDPIYIYYGNDELDES-------EYIVKNIIEWNKLGG----------K 344

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                +L RK++ +  +          Y I    +          IK+ M+  R I +++
Sbjct: 345 FSQCAILYRKKRQSHFLEEAL----IKYSIPYHIHGDISFFRRQEIKETMSYLRLIFNRK 400

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQKFANCGISK------FQHVI 485
           DD SF  ++ +P     +  I  I     E  + ++   +K  N  + K       +  +
Sbjct: 401 DDESFERIINTPTRGIGKKTISIIRNASKEYSSDMWTTCKKLLNINLLKKNSKTSIKRFL 460

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI---SRFGNEVIDVLDEFLNFTLRN-EQ 541
             I+ +   ++  S       I       + +    +      I  +   ++F  +  E 
Sbjct: 461 DLINLMDKESESMSIDQKVDYIFRRSGLSKMYENKKNEISRMKIQNISILVHFIKKFCED 520

Query: 542 NSYSSLQE-LISELE----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               +  E   S L          IK+    N + V +MT+H +KGLE P V +      
Sbjct: 521 RDERTPSELFHSFLSYSILSSSNGIKKYEDKNQDAVNLMTLHASKGLEFPFVLISGMEEG 580

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F  +                                       +    E  RL YVG+T
Sbjct: 581 TFPVRTDI------------------------------------EQEIAEERRLAYVGLT 604

Query: 657 RASDQLIICKHSNTSNEKKSNQR 679
           RA  +LI+   S+  +  + +  
Sbjct: 605 RAMKKLILTCVSSRFDRGRKSHN 627


>gi|237801822|ref|ZP_04590283.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. oryzae
            str. 1_6]
 gi|331024681|gb|EGI04737.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. oryzae
            str. 1_6]
          Length = 1230

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 133/1059 (12%), Positives = 286/1059 (27%), Gaps = 154/1059 (14%)

Query: 2    KNRFGLSLNESYELIYKD-------LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ 54
            ++  G    E  E   ++       L         ++      ++        K  +   
Sbjct: 208  RSTIGQEPAELIEASLQERRAALAALKAPWAAWADELYALCQDAVARKVVDGRKMQERFF 267

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            +    +                    +          KS        ++  E     D  
Sbjct: 268  KPWFEKLSAWAADESQEALDLGTGFTRLTPEGIAEAWKSDPPSHPAFQAMAELKPALDGL 327

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             T             A++++A +EE K++   + F+D+++  +  L+       +   I 
Sbjct: 328  PTPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAALRG-AGGERLATLIR 382

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F GA+ 
Sbjct: 383  EQFPVALIDEFQDTDPVQYRIFESIYR-----LEDNDQQTGLFLIGDPKQAIYAFRGADI 437

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               LR ++                 L  ++RS+  ++  V+ VF+  E            
Sbjct: 438  YTYLRARQA---------TNGRWHTLDTNYRSSHAMVESVNHVFTRAEQRVEGRGAFLFR 488

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                +         Q  ++ +    S              ++   +    LA   A  I 
Sbjct: 489  DDKGNQVPFSDALAQGRKETLQVDGSPLTALTVWHLESEQAVSGVAYRQQLAASCASEIV 548

Query: 355  NMIGTDT------IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
             ++            ++   R ++  DI +LVR  K+   +             SV  +D
Sbjct: 549  RLLNAGQQGSAGFASADKTLRGLRPADIAILVRDGKEAQAVRQQLTA---RGVRSVYLSD 605

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            +  +       DL++  +     + + +    L     + S  ++ ++           E
Sbjct: 606  KDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLSLAELERLNQD--------E 657

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
               +        ++ V +    L  + +          ++    G +   +         
Sbjct: 658  LAWELRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMARTDGERVLTNLL------H 711

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            L E L           + ++ L   L               ++   V+++T+H +KGL+ 
Sbjct: 712  LSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQY 771

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            P+VFL    S          +    +            + +        LI+        
Sbjct: 772  PLVFLPFICSSKPVDGSRLPLQFHDAEG----------RPQISLQPTEALIRQADDERLA 821

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNE----------------KKSNQRTWYDMVYDSF 689
            E  RLLYV +TR+     +                           +      D+     
Sbjct: 822  EDLRLLYVALTRSEYACWLGVADLKRGNANNSMLHRSALGYLLGGGTPLPESSDLKVWLR 881

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
               E    I L       +               L  +    +                 
Sbjct: 882  DLAEGCGAIVLQTVPESTDNSFSAPRNDASLVKLLVPKRRAAENWWIASYSALRIGDTVT 941

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQVIFTL- 796
               +    +P          L+                  +  N G  +H LL+      
Sbjct: 942  AGADQSPDSPQAQKLFDDERLDPEAPRDILLGGGDIHRFPRGPNPGTFLHGLLEWAGNEG 1001

Query: 797  ------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMTTAMSC 843
                     K ++ +   C +       +  ++ L     + L          +      
Sbjct: 1002 FANTAHAPDKLEDAVARRCNRRGWKGWIETLRDWLQQTLTMPLRLSPDASPVALGDLDQP 1061

Query: 844  DSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQISISQQN 877
            + Y  E+     S  +N  + D ++                       G ID     +  
Sbjct: 1062 NQYRVEMEFWFASTNVNVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHEGR 1121

Query: 878  IFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS---------YPNKS 919
             ++ +YK++     +  +         +   +  Q  +Y   L            Y    
Sbjct: 1122 YYVADYKSNWLGSDDDAYTELAMEASILDNRYDLQYVLYLLALHRQLKARMADYDYDQHM 1181

Query: 920  LVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
               L +++           F  P  +L ++   +    P
Sbjct: 1182 GGALYLFLRGSRAASQGAWFTRPPRELIESLDLLFQGKP 1220


>gi|221194558|ref|ZP_03567615.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626]
 gi|221185462|gb|EEE17852.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626]
          Length = 843

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 102/774 (13%), Positives = 216/774 (27%), Gaps = 135/774 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+    +    V                 + ++  TL            
Sbjct: 42  GAGSGKTRVLTYRIAHMIADEGVRPWQILAITFTNKAAAEMRERLGTLLPGGTRGMWVCT 101

Query: 66  FSLLSSFFLTQKFTP--------------QKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                   K ++   +     D+++  +   + +    
Sbjct: 102 FHAMCVRMLREDSEAVGFGPNFTIYDDDDSKRLVKAIMADLDIDVRQFPMASLRSKISAA 161

Query: 111 RDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T    +   +S    +A  +    +   K+   +DF+DL++   +LL K      
Sbjct: 162 KNALITPDDMEQAASSPADYVAVRVYRALQSRLKRAEAMDFDDLLVKAFELLSKNPA--- 218

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           I     +   +I +DE QDT+ +Q+ +   L   +          + L  VGD+ QSIYS
Sbjct: 219 ILDAYQERFRYINVDEYQDTNGVQYAITNLLASKY----------KNLMVVGDDDQSIYS 268

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ K +L  +               +++L  ++RST  IL   + V +   +     
Sbjct: 269 WRGADIKNILAFEGDYP--------DAHVVKLEQNYRSTGHILGAANAVVAHNAHRTEKK 320

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                          ++ + ++       D   +        R 
Sbjct: 321 LF----------------------------TNEGDGEKICVYRAADERDEG-------RW 345

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I  +    T             DI V  R    + ++  +         +      
Sbjct: 346 IGSEIEKLHDGGT----------SYDDIAVFYRTNAQSRILEDML----LRAGVPYKIVG 391

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVY 467
                D   I+D+MA  + IL+ +DD++ + ++ +P        I KI         + +
Sbjct: 392 GTRFFDRAEIRDVMAYLKVILNPDDDVAALRVVNTPRRGIGSTSISKIQKFALDNQLSFF 451

Query: 468 EYIQKFANCGISKFQHVIKYIHEL-----IHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              +            V   + E                +    I+      + + +   
Sbjct: 452 AACEACIAEEGLLSAKVRNSLAEFTGTIEAGRTIDGELDEVIEAIVDRSGLIRAYEAEHT 511

Query: 523 NEVI---DVLDEFLNFTLRNEQNSYS---SLQELISELEQYPPTIKRAHSAN------HN 570
            E     + + EF +     ++       +L+ L             A +A+        
Sbjct: 512 MEADGRIENIREFFSVAAEFDETHDDIAETLESLQQLRAAGALDGGDAQTADVAFYAADV 571

Query: 571 EVRIMTVHTAKGLESP------VVF---------LVDTGSQVFS---------------H 600
            V + +   A             VF              +Q                   
Sbjct: 572 SVTVSSPTGASETVFDTAGASGTVFDAAAYGAPDYPSVAAQKLPAFMEWLALRSDLDSLA 631

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                + +M   +        +  +     I   +      +  EE  RL YV +TRA  
Sbjct: 632 GSTSAVTLMTIHSAKGLEFPAVFVAGMEETIFPHIASDTGSAHLEEERRLAYVAITRARK 691

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +L +   S       +        + +      R   I  ++ +        + 
Sbjct: 692 KLYLTYASTRRMYGSTQANPVSRFISEIPSEHVRAIGIGSSDFLGIGWEKRGDR 745


>gi|218258215|ref|ZP_03474617.1| hypothetical protein PRABACTJOHN_00271 [Parabacteroides johnsonii DSM
            18315]
 gi|218225664|gb|EEC98314.1| hypothetical protein PRABACTJOHN_00271 [Parabacteroides johnsonii DSM
            18315]
          Length = 1075

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 139/910 (15%), Positives = 280/910 (30%), Gaps = 102/910 (11%)

Query: 42   GNPTILKKAQTLQQASQTQCIEE---RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
            G+ + L     L Q    +           L   F        + II         D  +
Sbjct: 250  GSRSPLTLLDRLVQGEMKEPSATFIGLADNLDGCFTKTVSLGTRQIIGCAFEDGLNDCIK 309

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
             +    +            + + +      +++ + A Y E K    V+    LI +T +
Sbjct: 310  GIISLFNNLTAYNTAREIVRYYYTLGILTDVSRQI-AAYREEK---NVM----LIADTTE 361

Query: 159  LLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            LL K      + +I  K    ++H +IDE QDTS +QW   R L E+           R 
Sbjct: 362  LLNKVIGGSDAPFIYEKTGTHVDHYMIDEFQDTSGMQWNNFRPLIEESLAH------SRD 415

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
               VGD KQSIY F  ++ K +       Q +A  + +      L  ++RS  +I+   +
Sbjct: 416  NLIVGDVKQSIYRFRNSDWKLLDE-----QVQADFSPEVVHEETLKDNWRSCRNIVEFNN 470

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +F+          +   ++   S         ++             P  +        
Sbjct: 471  ALFTTLPGVLQTVYNEALSVSSLSEEQRAAFFTKIMSAYDKSFQQVPPPFMQKDGHVRIE 530

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                                +     +    +      KDI +LVR  ++   +      
Sbjct: 531  FLSGDDEKDWKE------EALGRLPGVLGKLQDNGYVLKDIAILVRTNQEGAQVADTLLA 584

Query: 396  LKN-----DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             K       Y   ++ ++   ++   A++ +++L R++ + ED  +    L S       
Sbjct: 585  YKEEHPSDRYNYDIISDEALFVSGSTAVRFMVSLLRYLKNPEDRTNGQIALYSY------ 638

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                         + +       A     +   V++ +                  +   
Sbjct: 639  -------------QVLKGIFGVEAPAFPPEVISVLQILSR--------------QSLYEI 671

Query: 511  KKGRQQFISRFGNEVIDV-LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
             +G  +  +    E   V +  FL+      Q   + L   +   ++       A     
Sbjct: 672  TEGLFRLFADDFPENEQVFVQAFLDMVSEYTQKESADLNRFLKWWDETGCRKTIATPDGQ 731

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            N +RI+TVH +KGL   VV +     ++        +               +P    ++
Sbjct: 732  NAIRILTVHKSKGLGFKVVIIPFGDWEIDHKPTKPVILWCHPEEKPFDRLHLVPVRYGQS 791

Query: 630  ---NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-RTWYDMV 685
                I +      +     +    LYV  TR+ ++LI+        ++++ +      + 
Sbjct: 792  LGKTIFAGDYFKERLHAFIDNLNTLYVAFTRSKEELIVFSPRPKKIKEETGEVEKISTLT 851

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
               +                      ++  T   E          +   D Q+I     S
Sbjct: 852  DALWAGLRTDMPDTREGEKLISLPAVFDAGTGVFELGDWWHPVAKEDNGDIQEIGMARLS 911

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
             I  D      L+            +    DN     G ++H++L  I           +
Sbjct: 912  SISPDDRLQLRLH-----------GKGYFFDNARRKHGALMHEVLSRI--RTRKDIPQSV 958

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
              Y  +   +   +E  +L+  +  LL  P   +     +   V     I   K    +S
Sbjct: 959  ERY--RQEGVIDREEAASLVARLEELLSLPEAASWYDGTAR--VLNEVDILFGKG---LS 1011

Query: 866  GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
             R D++ I+  ++ + +YK         EH    + +Q+  Y K+++       +   L 
Sbjct: 1012 KRPDRVMITGNSVIVIDYKFG-------EHTDQRYHSQVRNYLKLIRQMGYG-EVEGFLW 1063

Query: 926  YVSEPKVFII 935
            YV   K+  +
Sbjct: 1064 YVELNKIEAV 1073


>gi|291531227|emb|CBK96812.1| Superfamily I DNA and RNA helicases [Eubacterium siraeum 70/3]
          Length = 949

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 114/868 (13%), Positives = 247/868 (28%), Gaps = 181/868 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   +   Y++   +N   DF  +  +   +++  D+ A +R K    I ++++DE QDT
Sbjct: 184 VIAKVWDEYDKLLTENNATDFSTIQADAWRMMQNSDIFASVREK----IRYVMVDEYQDT 239

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ ++I ++                +  VGD+ Q +Y F GA  + +    +      
Sbjct: 240 NHIQEQLILAI----------GGKHGNICVVGDDDQGLYRFRGATIRNIFEFPKHFG--- 286

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                +  +I+L  ++RS   I+ + +   + PE  +          +   +        
Sbjct: 287 ---ENECRVIKLEENYRSEKGIIDLYNNWMTNPEYKRKFDWGKYRYPKQIYTSKN----- 338

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           + +  V +   +   P +                     ++A  I  M    T+      
Sbjct: 339 ETYSSVYTCKGTYDEPARV--------------------KLAEMIKRMKQNGTVTD---- 374

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  I+ L +  ++       T     +  I V      +  +   +K ++      
Sbjct: 375 ----YNQIVFLFKSVRNDE--AKKTAEFLEESGIPVYTPRSKLYFERAEVKQIIGCLICC 428

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--EYIQKFANCGISKFQHVIK 486
                              F+     +    +    + Y        ++  + + + + +
Sbjct: 429 ----------------FRTFTCFLKQQKDADKPSKISRYYISDCMPLSSGLLKENKELYR 472

Query: 487 YIHELIHIA------QFCSPHDFFTLILGAKKGRQQFISRFGNEVI--DVLDEFLNFTLR 538
            I E+ +           +    F  I+  +  R    +  G+       L E  N   +
Sbjct: 473 CISEIANDIAGCKDKTEYTLLSIFYRIIAFEPFRSYIENPDGSNARQARNLAEMSNIISK 532

Query: 539 N-----------EQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKG 582
                       +     S +     L          +           V  MT+H AKG
Sbjct: 533 FCYIHDMHLIGADNRDTLSEEFFERYLRLLKDEGVGEYEDEAEYAPEGCVSFMTIHQAKG 592

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVV +          K   +       + +        ++                 
Sbjct: 593 LEFPVVIV-----GSLPLKKESESKDSFFYSVESRFCRKPFEAPDMIPYF---------- 637

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              +  R  YV  +RA + L++        +  S  + +  ++ ++  +       ++ +
Sbjct: 638 ---DMWRKYYVAFSRAKNLLVLT------EKDGSRTKPFTSVITENIPDISEYNDNRVFD 688

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
            + K+        T H           +     +    + L                   
Sbjct: 689 RVKKEHIRKTYSFTSHISVYDECPSRYLYFKEYKFAPCEILH------------------ 730

Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC------------- 809
                             + G +IH  L+ +       R + IT                
Sbjct: 731 -----------------TSVGTLIHATLEDLNRFAIASRYDEITEVLIKKWFALNYAKMQ 773

Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID 869
                +   +  K+ L  +    +                    K+     + I+ G ID
Sbjct: 774 ESTGLMLSEERRKSALGQVLNYFDKRK------EHIRKVWKAEEKVELVLPEYILQGVID 827

Query: 870 QISISQQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
            I      I I +YKT       E       +  QL IY  ++ + Y        L Y +
Sbjct: 828 LIEDDDGKIEIVDYKTGRKPDSPEKSAQVEHYRKQLEIYAYLISERYKKNVSRMHLYYTN 887

Query: 929 EPK-----VFIIPQNKLNKAFAEISTKI 951
           E +      F   +N ++K   ++S  +
Sbjct: 888 EAEGNPLVTFEYSKNCVDKEIEDVSQTV 915


>gi|84494608|ref|ZP_00993727.1| putative DNA helicase [Janibacter sp. HTCC2649]
 gi|84384101|gb|EAP99981.1| putative DNA helicase [Janibacter sp. HTCC2649]
          Length = 1103

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 140/1065 (13%), Positives = 286/1065 (26%), Gaps = 199/1065 (18%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            L    S    +     L       +       + +         + + +        ++ 
Sbjct: 117  LGAAVSVSTYHSYAGRLVREHGLRLGYEADTRLLSEAAAWQTAHEAVVRYDGPMDEVDKA 176

Query: 67   S-LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               +++  +       +++ T E      D   +  +  +     + R N      + L 
Sbjct: 177  ESTVTAAVVDLAGEMAEHLQTPESVAAHLDRVIEHLEQLER-GDTKKRVNPVAGELTNLR 235

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                   +   Y E K+    +DF D +     L    D    I          +L+DE 
Sbjct: 236  LRRAVLPIVGRYAELKRSRDAMDFADQMALAAQLAMTFDDIGAI---ERARHRVVLLDEF 292

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDTS  Q  ++++L                + AVGD  QSIY + GA    + R      
Sbjct: 293  QDTSEAQLALLKALYV-------APGETSAVTAVGDPHQSIYGWRGASATTLTRFAVEF- 344

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                        ++L  S+R+ + +L V + +      A              S     V
Sbjct: 345  ----GDPDPAQKLDLSTSWRNDSAVLAVANHLAQPLRAAS-----RVKVEPLASRPGAGV 395

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
            G V++     +  +                          A  IA  ++       + + 
Sbjct: 396  GAVEVARLTTAADE--------------------------ADHIARWLATHRSRGAVSA- 428

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                        VL RKR +   +T         + I         L     ++D++AL 
Sbjct: 429  -----------AVLCRKRAEFATVTAALEE----HGIPHEVVGLGGLLLTPEVEDVVALL 473

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY------------------ 467
              +         V +L  P+      D+  +       + +                   
Sbjct: 474  HVVQDPARGDHLVRLLSGPMMRLGIADLDALAAWSRVQQRLRGGAVARHEKDLAPDAANA 533

Query: 468  -----------------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                             +  ++ ++    +   +   +  +  +  F    D       A
Sbjct: 534  PSIIEALDSLPPRGWVGDEGERLSDVARDRLAGLAATVRRMRGLT-FLPLADLVLEAEKA 592

Query: 511  KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAH- 565
                 + +SR           LD F +   +  Q+   ++L   +  ++      +    
Sbjct: 593  LGLDIEVLSRPEYTPAAARAHLDAFGDVAAQFSQSADRATLGGFLDWIKAAIDEERGLDR 652

Query: 566  ---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM---------------- 606
                A  + V++MT+H AKGLE  VV +       F   ++                   
Sbjct: 653  GYADATPDAVQVMTIHAAKGLEWDVVAVPALVESTFPAHNLHSPSFKDGQWRISAPKDKG 712

Query: 607  ---------HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK----KSTQEEYNRLLYV 653
                            D  G+P +  +S    + ++  ++       +    E  RL YV
Sbjct: 713  WLAGLQDGGLPYELRGDRDGLPEFGWRSAVGWDELAARLEEFAVSGGEHAVAEERRLAYV 772

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMV---------------------------- 685
              TRA   L++     +  +       + D V                            
Sbjct: 773  AATRARHALLLTASVWSRPKTPRVTSRFLDEVRELASVEGSPVRILEWVDLPVPPEDGSP 832

Query: 686  ------YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                   D       V  +            A   ++  PE+T        ++L      
Sbjct: 833  LVKPGTEDGHEFVWPVDHLGHRRVRADAAARAVTEASEGPESTSATVGPWARELDLLLAE 892

Query: 740  PKKLFSPIKNDINEPYILNPSTIDT--------KGKTNLESLLSDNQTFNRGLIIHKLLQ 791
              +  S   + +  P  L+ S++            +       +  Q   RG   H  ++
Sbjct: 893  RARRASRHDDIVELPSHLSTSSLVAFATDPERFAAELRRPMPSAPAQAARRGTAFHAWIE 952

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851
                   + R   +  +    +          L     R LE+P         +   + +
Sbjct: 953  -----EHYARAAIVDLFDLPGSADEDPMGDAELPAMRERFLESPW-------AAREPIEI 1000

Query: 852  SGKINCPKKDIIISGRIDQIS--ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
               +      + I GRID +   +   +  I ++KT      E+  +      QL+ Y  
Sbjct: 1001 ETALETVVDGVAIRGRIDAVFADVEGSDWVIVDWKTGRKPSGEVARMR---ALQLAAYRI 1057

Query: 910  ILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
                        +     Y    +    P        +++   +P
Sbjct: 1058 AWARLRGVDPQRVSGGFYYAGTGETVW-PVLADEAEISDLLGGVP 1101


>gi|330880227|gb|EGH14376.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            morsprunorum str. M302280PT]
          Length = 1230

 Score =  254 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 135/1091 (12%), Positives = 293/1091 (26%), Gaps = 183/1091 (16%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
             RF   ++       ++ W  P   +  +         T      +  +   L++ +   
Sbjct: 172  RRFCYPMSGDALAWVRENWSGPAALLPRVRGLFGRDRSTNTQAPAELIEASLLERRAALA 231

Query: 61   CIEERFSLLSSFFLT--QKFTPQKNIITQEINKKS-PDLKEKLKKSQD------------ 105
             ++  ++  +    T  Q    +K +  +++ ++      EKL                 
Sbjct: 232  TLKAPWAAWADELYTLCQDALARKVVDGRKMQERFFKPWFEKLAAWAADETQEALDLGTG 291

Query: 106  ---------------------EFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKK 142
                                  F  +              A      A++++A +EE K+
Sbjct: 292  FTRLTPDGIAEAWKSDPPSHPAFAAMAQLKAALDGLPKPDAAVLQHAAQWVSARFEEEKR 351

Query: 143  KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +   + F+D+++  +  L        +   I ++    LIDE QDT  +Q+ +  S+   
Sbjct: 352  RRAEMGFDDMLLRLDGAL-HGAGGERLATLIREQFPVALIDEFQDTDPVQYRIFDSIYR- 409

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   +     LF +GD KQ+IY+F GA+    LR ++                 L  
Sbjct: 410  ----LEDNDEQTGLFLIGDPKQAIYAFRGADIYTYLRARQA---------TDGRWHTLDT 456

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            ++RS+  ++  V+ VF+  E                +         Q  ++ +    +  
Sbjct: 457  NYRSSHAMVESVNHVFTRAEQRPEGRGAFLFRDEKGNQVPFADALAQGRKETLEVDGTAL 516

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV------IQAKDI 376
                         +        LA   A  I  ++        G          ++  DI
Sbjct: 517  TALTVWHLESEQPVSGVVYRQQLASSCASEIVRLLNAGQQSRAGFTAPGKALHGLRPADI 576

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             +LVR  K+   +             SV  +D+  +       DL++  +     + + +
Sbjct: 577  AILVRDGKEAQAVRSQLTA---RGVRSVYLSDKDSVFAAQEAHDLLSWLKACAEPDSERT 633

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
                L     +    ++ ++           E   +        ++ V +    L  + +
Sbjct: 634  LRAALACITLDLPLAELERLNQD--------ELAWEQRVMQFRGYRAVWRSQGVLPMLRR 685

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                      ++    G +   +         L E L           + ++ L   L  
Sbjct: 686  LLHDFALPQTLMTRTDGERVLTNLL------HLSELLQQAAAELDGEQALIRHLGDHLAL 739

Query: 557  ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                         ++   V+++T+H +KGL+ P+VFL    S          +    +  
Sbjct: 740  SGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDADG 799

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                 LI+        E  RLLYV +TR+     +         
Sbjct: 800  LAQISLQPT----------EALIQQADDERLAEDLRLLYVALTRSEHACWLGVADLKRGN 849

Query: 674  KKSN----------------QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
              S+                     D+        E    I L       +         
Sbjct: 850  ANSSMLHRSALGYLLGGGTALPESVDLKVWLRDLAEGCNAIALQPVPEPTDDSFSAPRNE 909

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD- 776
                  L  +    +                    +    +P          L+      
Sbjct: 910  ASLVKLLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQAQKLFDDERLDPEAPRD 969

Query: 777  -----------NQTFNRGLIIHKLLQVIFT-------LPEHKRKNFITSYCTKNAKLWPA 818
                        +  N G  +H LL+               + ++ +   C +       
Sbjct: 970  ILVSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFANTARDPIELESAVARRCNRRGWKGWI 1029

Query: 819  KEYKNLLLSITRL-LENP------MMTTAMSCDSYS-EVSV---SGKINCPKKDIIIS-- 865
               ++ L  +  + L          +      + Y  E+     S  +N  + D ++   
Sbjct: 1030 NTLRDWLQQMVNMPLRLSPDSTPVALGDLDQPNQYRVEMEFWFASTHVNVAQMDALVRRF 1089

Query: 866  --------------------GRIDQISISQQNIFIFEYKTHHHVPQEIEH---------I 896
                                G ID     +   ++ +YK++     +  +         +
Sbjct: 1090 THDNAPRAATETVSLNGMFKGFIDLTFEHEGRYYVADYKSNWLGSDDDAYTDLAMETAIL 1149

Query: 897  PYTHIAQLSIYEKILKDS---------YPNKSLVCLLIYVSE------PKVFIIPQNKLN 941
               +  Q  +Y   L            Y       L +++           F  P  +L 
Sbjct: 1150 DNRYDLQYVLYLLALHRQLKTRMADYDYDQHMGGALYLFLRGSRSASQGAYFTRPPRELI 1209

Query: 942  KAFAEISTKIP 952
            ++   +    P
Sbjct: 1210 ESLDLLFQGKP 1220


>gi|309780454|ref|ZP_07675203.1| ATP-dependent DNA helicase Rep [Ralstonia sp. 5_7_47FAA]
 gi|308920782|gb|EFP66430.1| ATP-dependent DNA helicase Rep [Ralstonia sp. 5_7_47FAA]
          Length = 706

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 103/627 (16%), Positives = 191/627 (30%), Gaps = 130/627 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R K    + + L+DE QDT+
Sbjct: 178 AALVYRNYVATLHAYQAVDFDDLIRIPAELFARNEE---VRLKWQNRLRYFLVDEYQDTN 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L         +H       AVGD+ Q+IY + GA    +   +        
Sbjct: 235 ACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNLKLLQTDFPN--- 285

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +        +  S   +              
Sbjct: 286 -----LKVIKLEQNYRSTVRILNAANAVIAQNPKLFEKTLWSEHGM-------------- 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                             + TS  D           A  + +          + ++  +R
Sbjct: 327 --------------GDAINVTSAND-------EEHEAESVVFK---------LSAHKFER 356

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      L   + R      +I  V +      D   IKDL A  R I 
Sbjct: 357 RAQFRDYAILYRGNFQARLFEQILR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 412

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E         + A   +   +
Sbjct: 413 NADDDPAFIRAITTPKRGVGNATLEVLGSFAGQAKVSLFEAAMMGGIEAQLAPRQLEPLR 472

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLR 538
              ++I  L   A           ++               R        + EFL++  R
Sbjct: 473 VFCEFIVRLSDRAAKEPAATLLDEMMEGIHYEAYLYDTYDERQAQNKWTNVLEFLDWLKR 532

Query: 539 ---------------NEQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                           +          +L EL   +        +    + + VR+ T+H
Sbjct: 533 KGTKPEKDDDEEATGFDNADGLMDTGKNLLELTQTIALISMLEGK--EEDPDAVRLSTLH 590

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H                                      
Sbjct: 591 ASKGLEYPHVFLVGVEEGILPHCREDDELT------------------------------ 620

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 EE  RL+YVG+TRA   L I         +++        + +    ++     
Sbjct: 621 --DEKIEEERRLMYVGITRAQRSLHISWCKKRKRARETVVCEPSRYIAEMKLGEDAGPTP 678

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLE 725
           + T      +              P+ 
Sbjct: 679 EDTMPAMSPKDRLGALKGLLAAKKPVA 705


>gi|282858262|ref|ZP_06267448.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
 gi|282588971|gb|EFB94090.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010]
          Length = 1131

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 121/799 (15%), Positives = 270/799 (33%), Gaps = 47/799 (5%)

Query: 152  LIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            ++ NT  LLK     +   ++  +I   + +I+IDE QDTS +QW+  + L  +      
Sbjct: 365  MLSNTQSLLKNLMKDNDIPFVFERIGAMLKYIMIDEFQDTSRVQWDNFKKLLLNCMAEIG 424

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA--GQKFSIIELPLSFRS 266
            +H+       VGD KQSIY +   + + +   +   +    +        +  L  ++RS
Sbjct: 425  SHN-----LLVGDVKQSIYRWRQGDWELLNNIEESIKPADGSYVDTSSIELKTLATNYRS 479

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ-CNPQ 325
             A+I+   +  F    N     ED  T  + +     +    +  +   +    +     
Sbjct: 480  EANIIRFNNAFFLQAMNVYEYPEDYFTPSKDKKIDKLEHSQKEKLKLAYADVAQKSPKAD 539

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
            +  +            A+ +   +A  I  ++                K I +LVR +K+
Sbjct: 540  ERGFVKATFYKKDAVYANDILAELADNIKQLLDIG----------YSQKSIAILVRNKKE 589

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
               I       +    I++V  + F L   LA+  L+   R +    D+L+   ++++  
Sbjct: 590  IADIVTTINGTEWGKHIAIVSEEAFRLDASLAVNILVEALRLLAQPSDNLTRAKLVRAYY 649

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY-IHELIHIAQFCSPHDFF 504
               + +  +    +R                   + +  I+  ++  +            
Sbjct: 650  QVVNPE--YDFAKERSTKLVSDVVDIAHDEHYYEQKEEFIRKHLNVSLPSEYVMDREKLL 707

Query: 505  TLILGAKKGRQQFISRFGNEVIDV--LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
             L L     +   + +  N  ++   +  F +      +++ + + + + E +     + 
Sbjct: 708  RLSLIDLVDKLYSLFQLKNLSVENAYISTFYDVLNDYLRDNPADIDDFVKEWDDSLCGVN 767

Query: 563  RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                 + + +RI+T+H +KGLE   V +     ++     I  +     +     +PI  
Sbjct: 768  IQTD-DVDGIRILTIHKSKGLEFDNVLIPFCDWELEKKNTIFWVDGKNKVEPFSQLPIIP 826

Query: 623  --PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
               +    N+  S            +   LLYV  TRA   L +   +   + ++SN   
Sbjct: 827  VSFKKDLENSFFSADYSEEHFQNIIDNLNLLYVAFTRAGKNLFLSGKNIADSNRRSNLLW 886

Query: 681  WYDMVYDSFHNDERVKKI--KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                   +   + +  +   +  +    DE I +E+ T    +     ++  ++  +   
Sbjct: 887  HCLKALGTTLPNAKYSESTKEKDDETKSDEPICFEFGTLLSAHEYEPNKKKEEEFTNPFT 946

Query: 739  IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
            +  +         N       S          E +    +    G ++H +   I TL  
Sbjct: 947  VIPQPKDIRIETFNAAVSFRQSNKSDAFVQG-EEITDRQKYMQVGSVLHNIFSSIKTL-- 1003

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
               +  + +   +            L   IT  L N  + +  + +   EV     I   
Sbjct: 1004 ADIEPHLQALEAEGVIYNDDISSAQLRQQITAALNNEQVKSWFAGE--WEVYNECTILQY 1061

Query: 859  KK--DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
             K  D     R D++      + + +YK  +H           +  Q+  Y  +L+    
Sbjct: 1062 DKATDRYYEQRPDRVITKGDEMVVIDYKFGNH--------RNEYYEQVHRYILLLQQM-G 1112

Query: 917  NKSLVCLLIYVSEPKVFII 935
            ++ +   L YV   ++  +
Sbjct: 1113 HQKVTGFLWYVMRGEILSV 1131


>gi|148654325|ref|YP_001274530.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148566435|gb|ABQ88580.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
          Length = 751

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 105/629 (16%), Positives = 191/629 (30%), Gaps = 124/629 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +     A Y+E  + +  LDF+DL++ T  L         +  +  +    +L DE QD
Sbjct: 171 EVTARCFARYQELLRDSNALDFDDLLVETVRLFDHHPT---VLERYQERYRFLLADEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L              R +F VGDE QS+Y+F GA+ + +L  ++     
Sbjct: 228 TNRAQYVLLKQLAA----------RHRNIFVVGDEDQSVYAFRGADIRNILSFEQDYP-- 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST  IL V   V +     +          +   +  G    
Sbjct: 276 ------DAQVILLEQNYRSTQAILDVAQAVINRSAQRR--------REKRLWTHNGAGAK 321

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           VQL                           +       A+ +A  I+ ++ +        
Sbjct: 322 VQLI--------------------------EGYDQDEEAQLVAAEIARLLASG------- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q  DI ++ R    +  +       +  Y I           +   IKD +A  R 
Sbjct: 349 --AYQPGDIAIMYRTNAQSRAVEEALLARQLRYVI----VGGTRFYERKEIKDALAYLRL 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------------ETETVYEYIQK 472
            L+  DD+S   +L  P     +     +  +                 ET+        
Sbjct: 403 ALNPFDDISLSRVLNWPARGIGQRTQEDLERRAGAAAVPLYVALQMLAAETDPASSAGGG 462

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDV 528
                 +     +  I E+I   Q  +       +      R+     +G E      + 
Sbjct: 463 AGGRARNVLLGFLSLIDEMIAQRQRLTLGALMEWLFAQVGFREALQREYGEEEGEDRWNN 522

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPV 587
           + E  N           S  +L + LE+              + +  +T+H AKGLE PV
Sbjct: 523 VLELRNVAENYATLPIES--QLPTFLEEVALVSDIDTLQEERDAITCITLHQAKGLEFPV 580

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFLV     +  H                                        +   +E 
Sbjct: 581 VFLVGLEEGLLPH----------------------------------ARSTDDRDALDEE 606

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YVG TRA ++L +      +   +++  T    ++D   +  +    +   +    
Sbjct: 607 RRLFYVGATRAKERLYLLHAFRRTTYGRADIATPSRFLHDIPPDLLQRTPKRGYAAQQSS 666

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDE 736
            +               +           
Sbjct: 667 LFTNRAAIAREQRQERTQPSRRSAPDGPR 695


>gi|225620718|ref|YP_002721976.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
 gi|225215538|gb|ACN84272.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1]
          Length = 659

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 105/564 (18%), Positives = 178/564 (31%), Gaps = 128/564 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y E +    V+DF+DLI+NT  L ++ +    +         +IL+DE QD
Sbjct: 159 DIFENVYKKYTEYEFNENVMDFDDLILNTIKLFEQEN---KVLNYYRNRFKYILVDEFQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++I+ LT+D             L  VGD+ QSIY+F GA+   +L  ++     
Sbjct: 216 TNPQQYKLIKLLTQDA---------ENDLTVVGDDDQSIYAFRGADVLNILDFEKDYPN- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    I+ L  ++R   DI+     V     N    +  S      +         
Sbjct: 266 -------TKIVRLEENYRCPKDIVEAALSVIKNNSNRHEKNVFSNKPNEFK--------- 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                              E+W  Y D           AR +   I ++           
Sbjct: 310 ------------------IENWICYSDLEE--------ARSVVNEIESLFDNG------- 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +A+DI+VL R    +       R     + I+          + + IKD ++  R 
Sbjct: 337 ---FEARDIVVLFRTNSQSRAYEKELR----LHSINYKIVGGVGFFERIEIKDSISFLRL 389

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIK 486
           +    D+ S    +  P     E               T+Y  I      G+SK    I 
Sbjct: 390 MTGFGDNFSVRRTINVPPRGIGEKSFNNFETFANSRKLTLYNAIDYIDESGLSK--KAIL 447

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFI------------------SRFGNEVIDV 528
            I    +I +  +       I+       + +                  +       + 
Sbjct: 448 NIKAYKNIIEEYAV-KIKEDIINEDGIHIELLFFEFLKDIDYFSIFKGDGNERVITAEEN 506

Query: 529 LDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           + E        +     ++L   + E   Y            + V +MT+H AKGLE  V
Sbjct: 507 IKELFRGFYDYKSMEANATLITFLEENTLYRDLNTND--EKEDYVTLMTIHNAKGLEFDV 564

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VF+      VF H                                       ++   +E 
Sbjct: 565 VFMTGMEQGVFPHYFSL----------------------------------EEEKGIDEE 590

Query: 648 NRLLYVGMTRASDQLIICKHSNTS 671
            RL YVG+TRA  +L +       
Sbjct: 591 RRLCYVGITRARRKLYLTYSKKRR 614


>gi|15806776|ref|NP_295498.1| DNA helicase II [Deinococcus radiodurans R1]
 gi|6459549|gb|AAF11329.1|AE002019_2 DNA helicase II [Deinococcus radiodurans R1]
          Length = 745

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 110/625 (17%), Positives = 185/625 (29%), Gaps = 119/625 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A      YE  KK    +DF DLI  T  L K+      +  K+  +   I +DE QD
Sbjct: 175 DAAAEAYRRYEVRKKGQNAIDFGDLITETVRLFKE---VPGVLDKVQNKAKFIHVDEYQD 231

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+ R L           S  R L  VGD  QSIY F GA+ + +L  ++     
Sbjct: 232 TNRAQYELTRLLA----------SRDRNLLVVGDPDQSIYKFRGADIQNILDFQKDYP-- 279

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +  L  ++RS+A +L   +K+          +                   
Sbjct: 280 ------DAKVYMLEHNYRSSARVLEAANKLIENNTERLDKTLKPVK-------------- 319

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            Q  ++    D   +          +A  ++ + G         
Sbjct: 320 --------------EAGQPVTFHRATDHRAEGD-------YVADWLTRLHGEGRA----- 353

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  ++ +L R    + +I    R      +I           D   I+D++A  R 
Sbjct: 354 -----WSEMAILYRTNAQSRVIEESLR----RVQIPARIVGGVGFYDRREIRDILAYARL 404

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------VYEYIQKFANCGISKF 481
            L+  DD++   ++  P     +  + K+        T           Q   + G  K 
Sbjct: 405 ALNPADDVALRRIIGRPRRGIGDTALQKLMEWARTHHTSVLTACANAAEQNILDRGAHKA 464

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRN 539
                 +  +   A    P  F   ++               G   ++ L+E ++     
Sbjct: 465 TEFAGLMEAMSEAADNYEPAAFLRFVMETSGYLDLLRQEGQEGQVRLENLEELVSAAEEW 524

Query: 540 EQNSYSSLQELISELEQYPPTIKRAH--------SANHNEVRIMTVHTAKGLESPVVFLV 591
            Q+  +    +   L+                   A  + V +MT+H AKGLE PVVF+V
Sbjct: 525 SQDEANVGGSIADFLDDAALLSSVDDMRTKAENKGAPEDAVTLMTLHNAKGLEFPVVFIV 584

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +   K                                           EE  RL 
Sbjct: 585 GVEQGLLPSKGAIAEGPSG---------------------------------IEEERRLF 611

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA ++L++    N     K+N       + D     + V             W  
Sbjct: 612 YVGITRAMERLLMTAAQNRMQFGKTNAAEDSAFLEDIEGLFDTVDPYGQPIEYRAKTWKQ 671

Query: 712 YEWSTHHPENTPLEREETIKQLMDE 736
           Y  +                +L   
Sbjct: 672 YRPTVPAATTAVKNTSPLTAELAYR 696


>gi|320008692|gb|ADW03542.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 1156

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 128/1005 (12%), Positives = 287/1005 (28%), Gaps = 133/1005 (13%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +  E  + +   L      Q +  + Y    +       L  A  L+  S  +       
Sbjct: 93   AAVELRDRMAARLGGTRGPQATTFHSYCYALVRAHQDADL-FADPLRLLSGPEQDVTVRE 151

Query: 68   LLSS---------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            LL+            +      +  + T+    +   +      ++   + +        
Sbjct: 152  LLAGQLGLEQAGLAHVRWPGELRACLTTRGFADEVRAVL-----ARSRELGLGPDALAAF 206

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              ++     + A    A Y +      VLD+ +L+     L ++ +V+A    ++ +  +
Sbjct: 207  ARRTGRPDWSAAAQFLAEYLDVLDAQGVLDYAELVHRAVLLAERPEVAA----QLARNYD 262

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             + +DE QDT   Q  ++ +L  +           RTL A GD  QSIY+F GA+   +L
Sbjct: 263  AVFVDEYQDTDPAQVRLLHALAGNRGSTAPGTGGGRTLIAFGDPDQSIYAFRGADVNGIL 322

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                  ++     G+   +  L  S RS A +L     +       +  S+         
Sbjct: 323  DFPDTFRR---ADGEPAPVGVLTTSRRSGAHLLEATRLLTRRMPLTRLPSDKVRAHRELS 379

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---ARRIAYTISN 355
            + R G  G V+ +       + +            + +P    A ++    R I      
Sbjct: 380  AVREG--GRVEAYTYPTPSTELENIADLLRRAHLEEGVPWRDMAVLVRAGGRSIPAVRRA 437

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            +             +    +  V         + T   R    +   S    +       
Sbjct: 438  LTSAGVPLEIDGDDLPLRHEPAVAPLLTALRTVATAALRLGAPEDPDSAEAVEEDPEAGE 497

Query: 416  LAIKDLMALGRFILSQE---------------------DDLSFVCMLKSPLFNFSEDDIF 454
                D+                                D  + + +L SPL +    D+ 
Sbjct: 498  APAGDVSDDTGSGGRGTGTDGGRGAGTADGYDVAPGGLDTETALTLLASPLGSMDAADLR 557

Query: 455  KICTQRHETETVYE---------------YIQKFANCGISKFQHVIKYIHELIHIAQFC- 498
            ++     + E                      +        +    + +  L+  A+   
Sbjct: 558  RLGRALRDEERAAGNRVPPPSGYLLARALAEPERLVTHDPAYARGAQRLGALLRKARELL 617

Query: 499  ----SPHDFFTLILGAKKGRQQFIS---------RFGNEVIDVLDEFLN-FTLRNEQNSY 544
                +  +    +        +            R  +  +D +    +      E+   
Sbjct: 618  EGGGTAEEALWTLWNGTPWPGRLERAALRGGAGGRNADRDLDAVCALFDTAARAEERTGG 677

Query: 545  SSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                  + E++            +   + VR+MT H +KGLE  +V +      ++    
Sbjct: 678  RGALNFLEEVDAQDIAADTLSRRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLR 737

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
             +   +        G+   +                   +   E  RL YV  TRA ++L
Sbjct: 738  RRGSLLEADRIGRDGLAEPLTPG----------------ALLAEERRLFYVAATRARERL 781

Query: 663  IICKHSNTSNEKKSNQRTWYDM------------VYDSFHNDERVKKIKLTNSINKDEWI 710
            ++      +++     R   ++               +  +     +    +    +   
Sbjct: 782  VVTAVKAPADDGDQPSRFLTELGTEPRDVTGRPRRPLAVASLVAELRATTVDPGASEALR 841

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI-----NEPYILNPSTIDT- 764
                          + E+              L  P ++++     + P  L+ S +D  
Sbjct: 842  DAAARRLARLAALTDDEDQPLVPAAHPHRWWGLNEPTRSEVPLRDRDRPVALSGSALDQL 901

Query: 765  KGKTNLESLLSDN--------QTFNRGLIIHKLL-QVIFTLPEHKRKNFITSY------C 809
                 L+  L                G ++H L  +V            +          
Sbjct: 902  ANTCALQWFLGREVKADAPATAAQGFGNVVHVLADEVASGRTAADLDVLMERLDSVWDGL 961

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID 869
              +A     +E  +   ++ R L   +M  A    + SE      +   +  + I G +D
Sbjct: 962  VFDAPWKSQQEKDHARAALERFLRWHVMDRAGRTPTASEHDFDVTLEAGEYAVRIRGSMD 1021

Query: 870  QISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            ++    +   ++ ++KT    P + E        QL++Y+  +++
Sbjct: 1022 RVEQDAEGRAYVVDFKTGKGAPTKDEVAA---HPQLAVYQLAVRE 1063


>gi|302205690|gb|ADL10032.1| Putative UvrD-helicase [Corynebacterium pseudotuberculosis C231]
 gi|308275925|gb|ADO25824.1| Putative helicase [Corynebacterium pseudotuberculosis I19]
          Length = 1074

 Score =  254 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 122/909 (13%), Positives = 260/909 (28%), Gaps = 174/909 (19%)

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            +    N ++ F + +     L ++      +        + +L+DE QDT   Q  ++RS
Sbjct: 239  QHLAYNNLMTFGEQMSLAARLAEENP---QVGASQRDRYSVVLLDEYQDTGHAQRVLLRS 295

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            L                + AVGD  QSIY + GA    + R +           +     
Sbjct: 296  LFS-----------GAAVTAVGDPMQSIYGWRGATSANLERFREDF----ALGEEPAQKR 340

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            EL +SFR+  ++L + ++V      A      +   +  R        T+  +     + 
Sbjct: 341  ELTVSFRNPPEVLQLANEVSREVLGAPDNPRRTVQPLSSREGAPHGEVTLGFFPSAEKER 400

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
            +   +   E++ +  +S                                          V
Sbjct: 401  EFVADQLAEAYKNRGESFTA--------------------------------------AV 422

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            LVRK++ +  I    +       + V       L D   + DL+A+   ++  +D  S +
Sbjct: 423  LVRKKRHSAPIALELQS----RGVPVEIVGLSGLIDIPEVADLIAIAAMLIRPQDTKSAL 478

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------------------------- 472
             +L  P       DI  +  +        +  ++                          
Sbjct: 479  RILAGPHVGLGAADILALADRAANLAGRGKAEREEKKTDPLERLEQIIAETLPKAPESVV 538

Query: 473  --------------------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                                +++ G+ + Q +   +  L   +   S  D F  I     
Sbjct: 539  GLAEAVADLDVPREEGAATRYSDEGLRRLQLLASELRYLRTHSLGHSLPDLFADIERVFG 598

Query: 513  GRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQ----YPPTIKR 563
             R + + R             LD F        +   ++L + +  LE            
Sbjct: 599  IRTEVLQREDPHSDGAPGTVHLDRFAEVVSDFARVPNATLSQFLDYLELSRSQGDGLEPG 658

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV-------FSHKHIKKMHIMPSLNDDP 616
                  + V+I+TVH AKGLE  +V ++   S         +          +     + 
Sbjct: 659  EVQVRSDRVQILTVHKAKGLEWQIVSVMHADSSTYKTTTSTWLSNESAVPSALRGDARED 718

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN--------RLLYVGMTRASDQLIICKHS 668
               +  P     +      +K   ++   E+         RL YV +TRA +++++   +
Sbjct: 719  DSLVGAPVWYIDSAESPADLKKQGEAHIAEFRAVEEEENARLFYVALTRAEERVLVTAST 778

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA----YEWSTHHPENTPL 724
            + +           DM+   F +         ++   +          +       +   
Sbjct: 779  DITKASPPGPYAHLDMLRTKFPDCVVEWFDGESDDALEPPLPEIGVFPQELRPEGADAVK 838

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINE---------------------PYILNPSTID 763
                 + +L+++ ++ ++    +   I E                        L+     
Sbjct: 839  AAMVDLPELIEDGELFERWEQEVTALIEEHHQLSTPVVPVELGLELTASDIVNLSQDPQA 898

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
               +         N    RG   H+ L+        +          +   +  A +   
Sbjct: 899  FARRRRRPVPFKPNSYAKRGTAFHQWLEN-------RFGATALLDADELPGIDDALDGTE 951

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFE 882
            L     R L++            +   V         + I+ GR+D +         + +
Sbjct: 952  LETLKARFLDSEW-------ADRTPEYVEHPFEVSIGEHIVRGRMDAVFRDADGRWIVVD 1004

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKL 940
            +KT     +  E    +   QL++Y          +   +  L  YV     +   +   
Sbjct: 1005 WKTGQPPTEAAERRSVS--LQLAVYRLAWARLQGVEPSEVQALFHYVGRNFSYRPSELPD 1062

Query: 941  NKAFAEIST 949
              + A +  
Sbjct: 1063 EASLARMLA 1071


>gi|295396964|ref|ZP_06807086.1| ATP-dependent nuclease subunit A [Aerococcus viridans ATCC 11563]
 gi|294974817|gb|EFG50522.1| ATP-dependent nuclease subunit A [Aerococcus viridans ATCC 11563]
          Length = 1287

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 108/644 (16%), Positives = 219/644 (34%), Gaps = 53/644 (8%)

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                     +S          Q ++ TQ   + +  +K+   K    +    +++    
Sbjct: 295 IATSFPALVSMSKKDFEDGNDAQIDLRTQLGKRHNKTIKDVFDKDIMPYFTFDEQYQGLF 354

Query: 119 MFKS---TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI------ 169
           + ++     A + + K         K    +LDF D+ + T  +L K+            
Sbjct: 355 IQEAKKLGQAIINVEKVFTERMTAHKFDQRILDFSDIELFTYQILSKQLADTEAGDGESM 414

Query: 170 ----------RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
                     +     +   +++DE QD + +Q  ++++++         +     +F V
Sbjct: 415 SGNVNTMNEAKAYYRDKFTEVMVDEYQDVNALQEAILQAVSG--------NPEHPNMFMV 466

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD KQSIY F  AEP   + +           G     I L  +FRS AD+L   + +F 
Sbjct: 467 GDVKQSIYRFRFAEPGLFIHKFNQF-----ADGNGGQRIVLAENFRSRADVLDFTNFIFR 521

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
              + Q            +        T ++  +++   +       +      D L  +
Sbjct: 522 QVMDPQVGQIAYDEDAALKLGFTAYPETDRMQTEILLYEEEDGGKSSDYDQEGLDGLEGD 581

Query: 340 SS--ASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTR 394
            S    + A  IA +I + +    +  + +    R I   DI++LV  R+    +  +  
Sbjct: 582 VSNGTKMQAELIAQSILDKVNNQHMIYDKRLQVNRPITFNDIVILVATRRHHSELEDVF- 640

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                YKI ++ +D         I+ ++ + +FI +   D+    +L+SP+   +E D+ 
Sbjct: 641 ---AQYKIPLMLDDSANYFQRTEIRVMLNVLKFINNPYQDIPLAAILRSPIIGLNEQDLA 697

Query: 455 KICTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           KI     +           A           K + +  +      IA+          I 
Sbjct: 698 KIRIANKQATYYDAMKTYMAMDEGQDERVAEKLRTLNDWHLAWRDIARDKPLATLIWQIY 757

Query: 509 GAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIK 562
                         G    + L  F       E +++  + + I  +E+           
Sbjct: 758 TDTGFLDYVGGMPNGEIRQNNLHGFYKLASDYEASAFKGIFQFIRFVEKIQEKDNDLQAP 817

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +      + V + T+H +KGLE P+V++ +   +  +      +    ++     +    
Sbjct: 818 KHGDEARSAVHVYTIHHSKGLEFPLVYVYNISKRFNTQDLRNPVIYNDAIGIGVKLSDRT 877

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                 N       +  KK    E  R LYV +TRA  QL++  
Sbjct: 878 RHITYPNMFEMMAKRFEKKDMLAEEMRKLYVALTRAEQQLVLVG 921



 Score = 90.8 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 83/286 (29%), Gaps = 18/286 (6%)

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
              V +  + D L          ++ +       +      +            I   +  
Sbjct: 988  FRVAVVSSEDALAGRNKWVQKVDESNQVDQAELLAAIFSDDKMATDDQDNKQVIQLPDAD 1047

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                     + T  +    +K+++ +          + N             D     + 
Sbjct: 1048 FDYAYQSATKTTSFQSVSELKRMLQDPSDQDLQPWSVNNQNKLTKTFRYIEEDYDQ-PSF 1106

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNL-LLSI 828
             +          G   H L+Q +    +     F   +       +   + + ++ +  +
Sbjct: 1107 LAREQAVTPTAIGSAAHLLMQKVNLRAKPSEATFKALFDDLCQVGILSQQLWPHIQVDKL 1166

Query: 829  TRLLENPMMTTAMS--CDSYSEVSVSGKIN--------CPKKDIIISGRIDQISISQQNI 878
                +  +    +      Y E + S  +             D+++ G ID   + Q  I
Sbjct: 1167 VAFFDTAVGQLILKQVDHVYREETFSLMVAGSEIFTDMATDDDLLVHGTIDGFILFQDEI 1226

Query: 879  FIFEYKTHHHV----PQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
            F++++KT         Q+ + +   +  Q+++Y + L+  +  + +
Sbjct: 1227 FLYDFKTDRIAYLNESQQEQTLIDRYQGQMALYAQALETIW-GRPV 1271


>gi|77920383|ref|YP_358198.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380]
 gi|77546466|gb|ABA90028.1| ATP-dependent DNA helicase PcrA [Pelobacter carbinolicus DSM 2380]
          Length = 737

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 121/757 (15%), Positives = 222/757 (29%), Gaps = 145/757 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   QV                 + ++ Q+L   +        
Sbjct: 28  GAGSGKTRTLTHRIAYLIQQQQVEPWQVLAVTFTNKAAAEMRERLQSLVG-NIDGLWIST 86

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM-FK 121
           F    +  L +        ++    +   +   +K+ L + +     ++ R     +   
Sbjct: 87  FHAACARILRRDGEVLGYGRDFTIYDDQDQQRLIKDCLAQLRITEKDLKPRAVATAIDQA 146

Query: 122 STLASL-----------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
                L                +   Y++  ++   LDF DL++ T  L ++      IR
Sbjct: 147 KNRGLLPEEYIPGDHRGEQVARVYELYQKRLQQANALDFGDLLLQTVRLFREYSH---IR 203

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
               +   H+L+DE QDT+ +Q+ ++++L +D           R L  VGD+ QSIY++ 
Sbjct: 204 DAYRRRFAHLLVDEFQDTNQVQYAMVKALADD----------GRHLCVVGDDDQSIYAWR 253

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GAE   +L  +R             S+I L   +RS+A IL    +V +     +G +  
Sbjct: 254 GAEIGNILNFERDFP--------GASVIRLEQHYRSSATILEAAGEVVACNIGRKGKT-- 303

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW             +  +     D L +       AR +A
Sbjct: 304 -------------------LW-------TDNPAGEPLTLEPLPDDLEE-------ARFVA 330

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I+ +                 +D+ V  R    + ++            +  V     
Sbjct: 331 AEIARLRDAGR----------HLRDVAVFYRTNAQSRVLEETL----VREGLPYVMVGGV 376

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
                + IKD++A  R + +  D LS   ++  P          +I     E        
Sbjct: 377 KFYARMEIKDVLAYLRALANPADSLSARRIVNVPSRGIGAVTTGRIAEHEEEAGGFLAAC 436

Query: 471 QK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
           +              K      ++                  +L              + 
Sbjct: 437 RLCLERGVLKGAAAKKVAAFSAFMERFAQRMTEVPFPQLTADLLEESGYAPNLREEAQSA 496

Query: 525 -----------VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEV 572
                       ++ L++ L     ++         L   LEQ              + V
Sbjct: 497 MTEGERKEAKGRLENLEQLLAGMEEHQATE----SSLQEYLEQVALVTDLDSYDTRLDRV 552

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE PVVF+      +F H                                
Sbjct: 553 TLMTLHAAKGLEFPVVFMTGMEEGIFPHG------------------------------- 581

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                  ++   EE  RL YVGMTRA  +L +                    + +   + 
Sbjct: 582 ---RAAGERDDVEEERRLCYVGMTRAMQKLYLTHARRRRIYGDYQYNAPSRFLAEIPPHL 638

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
              K      ++ K             E TP E  E 
Sbjct: 639 MGDKPAP---ALQKPATHNLASVFEQIEPTPFEESED 672


>gi|229542655|ref|ZP_04431715.1| UvrD/REP helicase [Bacillus coagulans 36D1]
 gi|229327075|gb|EEN92750.1| UvrD/REP helicase [Bacillus coagulans 36D1]
          Length = 538

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 95/562 (16%), Positives = 183/562 (32%), Gaps = 113/562 (20%)

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           ++  Q+ +++ L   F          + L  VGD  QSIY + GA+   +L  ++     
Sbjct: 26  SNKSQYTLVKLLASRF----------QNLCVVGDNDQSIYRWRGADIANILSFEKDYPN- 74

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST  IL   +KV     N +  +                   
Sbjct: 75  -------AKVILLEQNYRSTKKILQAANKVIENNANRKKKN------------------- 108

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW       ++        + +         S    A+ +A  I  +  +        
Sbjct: 109 --LW------TENDEGQNLVYYRA--------DSEQGEAQFVAGKIKELTASGKR----- 147

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  DI +L R    + +I  +         I+          D   IKD++A  R 
Sbjct: 148 ----RYSDIAILYRTNAQSRVIEEVL----MKSNIAYNIVGGTRFYDRKEIKDILAYLRV 199

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN-----CGISKF 481
           I + +DDLS   ++  P     +  + KI      +  +++  +Q+              
Sbjct: 200 IANPDDDLSLTRIINVPKRGIGQTSLDKIVRYAADQDVSLFTALQEIDFIGLSPKITKAC 259

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +   + I     + ++ S  +    +L     R         E     + +DEFL+    
Sbjct: 260 REFYELISNFTRMQEYLSVTELVEELLDKSGYRDALKLEKSLEAESRLENIDEFLSVAQE 319

Query: 539 NEQNSYS-SLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            E+ +   SL   +++L             A  + V +MT+H AKGLE PVVFL+     
Sbjct: 320 FEKENDDKSLVAFLTDLALVADIDRLEEDDAQKDAVVLMTLHAAKGLEFPVVFLIGMEEG 379

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H                                      + ++  EE  RL+YVG+T
Sbjct: 380 IFPHSRSL----------------------------------MDEAEMEEERRLMYVGVT 405

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA--YEW 714
           RA ++L +      +   + N       + +         + +  + ++  +  +     
Sbjct: 406 RAQEELYLTNAEVRTLYGRMNINPVSRFINEIPEELIEDIRKEEKDRLDFRQVSSGNTRR 465

Query: 715 STHHPENTPLEREETIKQLMDE 736
               P   P  ++        +
Sbjct: 466 KEKRPPVVPAWQQNRAGNPSWQ 487


>gi|332035180|gb|EGI71690.1| exodeoxyribonuclease V beta chain [Pseudoalteromonas haloplanktis
            ANT/505]
          Length = 1192

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 139/919 (15%), Positives = 280/919 (30%), Gaps = 136/919 (14%)

Query: 90   NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
             K  P     L    DE   + +  N          +   A+++ A   + K++  V+  
Sbjct: 295  KKNQPLFVHPLLSQFDELAALNNTINQGLKIAVVQHA---ARWVKAAIVKRKQEQSVITP 351

Query: 150  EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            +DL+ N +  L   +    +  KI Q     +IDE QDT  IQ+ +   +          
Sbjct: 352  DDLLTNLHSAL-NNEQGDVLAQKIAQLFPVAMIDEFQDTDPIQYGIFSKIYG-------- 402

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 TL  +GD KQ+IY F GA+    +  K   Q              L  +FRS+ D
Sbjct: 403  -QQNTTLAMIGDPKQAIYGFRGADIFTYIGAKEAVQTD--------QQFTLGTNFRSSTD 453

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            I+  V+ +F   ++A     +        +++  +     L +   +          E+ 
Sbjct: 454  IVNSVNSLFG--KHANSFIYNDAIPFNAVAAKGKKAEDSFLIDGKAATAFEFNVFVDEAA 511

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDILVLVRKRKDTPL 388
                    +    + LA   A  I  ++              + A DI +LVR R +  +
Sbjct: 512  DEKNKPTNKGVGQAHLATHFANKIVTLLEKAKQGDACIGSTPVSAADICILVRDRVEAQI 571

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            +         D KI+ V   R  +        L+     +  Q D+     +L  PLF  
Sbjct: 572  MKKAL----GDAKIASVYLSRESVFSQELSHHLLNFLTALHGQYDESLLRGVLAGPLFCL 627

Query: 449  SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
            S ++I  +    ++ +    +  + ++      Q  +  +  L       S +       
Sbjct: 628  SYNEIHALADDENKWQDYLNFFAQLSHIWNK--QGAMAMLERL------MSHNQLSAKWQ 679

Query: 509  GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT-IKRAHSA 567
            G     +++++ F       L E L       + +   L+    ++ Q     ++    +
Sbjct: 680  GLGYNVERWLTDF-----RHLGEILQQKQIELEGTLRLLRWFAQKVSQQDGETVQVRLES 734

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            + N V+I+T+H +KGLE P+VF+                           +     +   
Sbjct: 735  DANLVKIVTMHASKGLEYPLVFMPFASGYR---------------ETKEALYHNNGKLVY 779

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
              +   + ++  ++    E  RLLYV +TRA     +  ++    +          + + 
Sbjct: 780  DLSKDENALQKAEQERLAEDLRLLYVALTRAVHFCALGVYNIGQGQSSRLAMQSSALGHV 839

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI---------------KQ 732
             F   E          +++        S     +  L  + T+               K 
Sbjct: 840  VFAGLELASSQTWRTHLSEFCDANSAMSYQQFTSQTLLEQGTLCFNNSESAQQTLSVNKV 899

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--------GKTNLESLLSDNQTFNRGL 784
              + ++  +       +       L P   D           +  L S  S  +    G 
Sbjct: 900  TANIERNWRATSFSALSFKKHSDQLAPGRSDEDHEKDEFAVQEDELPSPYSFPKGAKPGS 959

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKL------WPAKEYKNLLLSITRLLENPM-- 836
             +H++ + I                ++  K          +  +     +  +L  P+  
Sbjct: 960  CLHEIFEQIDFTSPIVHPTNTEQNLSEVVKRSLEKYHIGEQWREVAEKWVLDVLACPLDN 1019

Query: 837  ---------MTTAMSCDSYSEVSVSGK-----------------------INCPKKDIII 864
                     +      D   E+  +                         +       ++
Sbjct: 1020 SSQENSLLSLGVLTPNDCLVEMEFNLPLESLSAPKLNEMLIKHFGFTQSKLEFSHVKGLL 1079

Query: 865  SGRIDQISISQQNIFIFEYKTHH---HVPQEIEHIPY------THIAQLSIYEKILKDSY 915
             G +D I   Q   +I +YK+++           +         +  Q  IY   L    
Sbjct: 1080 KGFVDLIFCYQGKYYILDYKSNYLGSTPADYEGDMLEQAMSSHQYHLQYLIYTVALHRLL 1139

Query: 916  PNK----SLVCLL---IYV 927
              +    S+   L    Y 
Sbjct: 1140 KQRIADYSIETHLGGVYYT 1158


>gi|299138774|ref|ZP_07031952.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
 gi|298599410|gb|EFI55570.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
          Length = 1202

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 136/892 (15%), Positives = 281/892 (31%), Gaps = 92/892 (10%)

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            ++L  +      +         ++   A   L  +  A  +    +    DF +L +   
Sbjct: 349  DRLLDALHALRALPPARYPDGQWEVAKALFRLLLHALAELKVLFAERGECDFAELALAAR 408

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            + L+  D  A +       + H+L+DE+QDTS  Q+E+I  LT  +          +TLF
Sbjct: 409  EALRADDGPADLAGSSGATLRHLLVDEMQDTSSSQYELIELLTRSW------DGHSQTLF 462

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD-- 275
             VGD KQSIY F  A  +R +R  +     A+       ++ L  +FRS A ++   +  
Sbjct: 463  LVGDPKQSIYLFRQARVERFMRTMQE----ASLGDVPVGVLRLTSNFRSQATLVEDFNGA 518

Query: 276  --KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
              ++F   +            +   + R        +W   +   + +  P         
Sbjct: 519  FSRIFPGADATLSSEAIDVPFVAATAVRQKTTSEGIVWHTAMLGEEIESAP--------- 569

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                  +  +  A   A  I  ++         + R    + I VL R R+    I    
Sbjct: 570  ----TNNPRNDHALLEARRIRQIVEHWQQKPLPEGRTQPWR-IAVLARARRHLAPIVAEF 624

Query: 394  RFLKNDY-KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            +  +  +  I         L +   + D +AL R +L   D ++++ +L +P       D
Sbjct: 625  QRNEAAHPPIPFRAVKVEALDERPEVLDALALTRALLHPADRVAWLAVLHAPWCGLGIAD 684

Query: 453  IFKICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
            +  +  +     +       +       +N G +        +   +  +          
Sbjct: 685  LLALTGEGSSPASSDTIPALIESSESYLSNEGRALLTRAWPILRTALGESGRGDIAVRIE 744

Query: 506  LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRA 564
                +  G          E    +  F       EQ   +  L+ L + LE+    +   
Sbjct: 745  RTWRSLGGDVLLQ----PEQRTNVQHFFALLRELEQPGGWIDLRALKTRLEK----LFAE 796

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG----IPI 620
             ++    V +MT+HTAKGLE  VV +     +  + +      +    +D  G    +  
Sbjct: 797  PASGEVAVELMTIHTAKGLEWDVVIVPALEKRGQTSRSDLLNWLELDGDDVTGPSIVLAP 856

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR- 679
               +    + +   L        + E  RL YV  TRA ++L +      +++ +     
Sbjct: 857  IYGKGSDPDELYKWLNHIRNAREEAERKRLYYVACTRAREELHLFATCERTSKGEIKPPI 916

Query: 680  -----TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                 + +      F          L   + +            P  TP   + +   L+
Sbjct: 917  GTLLYSCWPAAQKHFDAWLEAPPSNLEGQLKQSLGEDESAEGIVPTATPGTPQISGPPLI 976

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI- 793
                +                    S    +   N E           G ++H+ LQV+ 
Sbjct: 977  HRLPLTFNPLQRFAEAAEHRLPYL-SASALRQTPNFERPEGSFAVRAFGNVVHRFLQVLA 1035

Query: 794  --------FTLPEHKRKNFITSYC-----TKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
                          +  ++             A     +E    L ++ + L + +    
Sbjct: 1036 TRLTSGTTADQLLAELGSWEPRLLASLRGEGLAPALCQREASRALQALVQTLSDDIGRWI 1095

Query: 841  M--SCDSYSEVSVSGKINCPKKDIIISGRIDQIS--------ISQQNIFIFEYKT----H 886
            +     + SE +        +   +   R+D+          +  + ++I ++KT     
Sbjct: 1096 LMPQPTAVSERAF--TFAAAESPTL---RVDRTFPGGTAPLSVGSEALWIVDFKTTEQGS 1150

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIP 936
                +  E     +  Q+  Y   +       ++ ++  L Y   P++   P
Sbjct: 1151 RSAERFAEDERAKYSPQMESYA-AVCRLLTDADRQIMLGLYYPLIPRLIHWP 1201


>gi|163857867|ref|YP_001632165.1| putative nuclease/helicase [Bordetella petrii DSM 12804]
 gi|163261595|emb|CAP43897.1| putative nuclease/helicase [Bordetella petrii]
          Length = 1152

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 140/1005 (13%), Positives = 287/1005 (28%), Gaps = 145/1005 (14%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L++    ++ E  + +     P+ + +       ++ +    + T    A      +  +
Sbjct: 211  LQDALAEAIGEDLQAL-ARAMPMGWDETLRWPARMAAAALDEDGTAHALAALRDWHAPLE 269

Query: 61   CIEERFSLLSSF---FLTQKFTPQ-----------------KNIITQEINKKSPDLKE-K 99
                      +     LT     +                 K   TQ ++   P      
Sbjct: 270  PDAAWLDQWKAVRHLLLTAAGALRSARGVNKKLGFPPKCEHKEAFTQWLDAADPKAAWIW 329

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
            +  + D+          +++  + L +L LA    A       +   +DF ++       
Sbjct: 330  MLDAVDKVPPAEFSDAQWRVLGAQLMTLKLA---VAQLHLRFAETREVDFIEIAQRAAHA 386

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            L   D    +  K+D  I H+LIDE QDTSL Q  ++ +LT  +  G       RTLF V
Sbjct: 387  LGSADDPGELLLKLDASIRHLLIDEFQDTSLAQIHLLATLTAGWQPGDG-----RTLFLV 441

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD  QSIY F  AE    L+                + ++L  +FRS A ++  V+  F 
Sbjct: 442  GDPMQSIYRFRKAEVGLFLQAAEQ-----GVGEISPTFLQLTDNFRSQAGVVDWVNATFR 496

Query: 280  I-PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                     +  +       +      G                      + + F +   
Sbjct: 497  GLLPPRNDAAAGAIAYTDSAAFNPALPGQA------------------VCFHAAFSADGA 538

Query: 339  ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             ++ +         +   +                  + +LVR R               
Sbjct: 539  GAADAAAEALTVQLVRQALDERD--------PASRHPVAILVRARGHLG----QLVRRLT 586

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457
               I     D   L     + DL+ L R +    D ++++ +L++P    +   +  +  
Sbjct: 587  QAGIRCRAVDLVPLAQRHVVSDLVQLLRALSHPADRMAWLSVLRAPWCGLTLHSLHALFG 646

Query: 458  ----------------------------TQRHETETVYEYIQKFANC--------GISKF 481
                                            ++ ++++                  ++ 
Sbjct: 647  HDLSTPVPVLLAEALRAQEARPASAPDAAAPGQSLSLWDAPAAQPCRAQRMLPQAEYARL 706

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
             HV   + +  + +       +   +     G   + S    E  + L   +     +  
Sbjct: 707  AHVAPILLDAANASGAMPLAAWLESLWRRLGGAGLYASPSAAEDAESLFLLVERLAPHGG 766

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + L   ++ L   P       + + + V IMT+H +KGL+   V L        + +
Sbjct: 767  LDPARLDAALARLYAAPEG----GAGDGSVVEIMTMHKSKGLQFDTVILYGLHKSPRA-E 821

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                +    S       P+     K  + I   L    K+    E +RLLYV  TRA  +
Sbjct: 822  RAPLVSFEQSGKRVLFGPVKPRADKEADPISRYLGLREKRRAAYETDRLLYVAATRARHR 881

Query: 662  LIICKHSNTSNEKKSN-QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            L +  +                 ++   +      +K+   +  +              E
Sbjct: 882  LHLVGNVAVDRATGQPKAPPAASLLGRLWEWLPAEQKMPPPDWQDDASDTDETDGQLRGE 941

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
                  ++ I+ L              +  I  P     + +    +     L + +   
Sbjct: 942  PLRRLSDQAIETLRAR-----------RAAIGSPGFAVGAAVGQGAEHPAWQLDTAHDAA 990

Query: 781  NRGLIIHKLLQVIFTLPEHKRKN--------FITSYCTKNA--KLWPAKEYKNLLLSITR 830
              G + H  L  I                   +    T+         +  + +L ++  
Sbjct: 991  -IGTLAHAWLARIGQDGLSAWPADTLRGYLPVMQKQLTRAGLPAAQAPEAAQAVLDTLLA 1049

Query: 831  LLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
             L +      +S   +  E      +      + +   ID    ++    I +YKT    
Sbjct: 1050 TLAHERGRWLLSQSAARREWP----LIDAAGRVSV---IDLALSTEDGWLIVDYKTARPH 1102

Query: 890  PQE-----IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
            P E        +   H  QL+ Y   +      +     L +   
Sbjct: 1103 PDESPAHFAARMRERHADQLARYCAQVTALDS-RPARAALYFPRA 1146


>gi|159039658|ref|YP_001538911.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157918493|gb|ABV99920.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 1162

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 130/966 (13%), Positives = 247/966 (25%), Gaps = 190/966 (19%)

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D      + +  L  L L       Y   K+    +DF D +     + +   V   I 
Sbjct: 228  ADVRRALTLQQIRLKLLPLV----RAYARRKRDFEAMDFADQLARAARVARDHPVVGEI- 282

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                     +L+DE QDTS  Q  ++ +L                + AVGD  QSIY + 
Sbjct: 283  --ERDRYRVVLLDEYQDTSHAQVVLLNALFG----------GGHPVTAVGDPCQSIYGWR 330

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA    + R      +     G    +  L  S+R+  ++L V + + +    A     +
Sbjct: 331  GASAGTLDRFPTEFAR---ADGVPAQVRTLTTSWRNRPEVLGVANALATPLRAAGARVPE 387

Query: 291  S------TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ--CNPQQESWTSYFDSLPQESSA 342
                      I HR+ R    GTV          +++   +    +W     +       
Sbjct: 388  LHAALSVKEPIPHRTPRGSAAGTVHCALLDTYADEAEWIADSLLRAWQGAAGAPGAVPEH 447

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              +A R                             VLVR R   P I    R       +
Sbjct: 448  LPVAAR-------------------------PTTAVLVRLRSQIPAIESALRA----RGL 478

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
             V       L D   ++D++   R +    D  + + +L    +     D+  +  +   
Sbjct: 479  PVDVVGLGGLLDTPEVRDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVALHRRARA 538

Query: 463  TETVYEY----------------------------IQKFANCGISKFQHVIKYIHELIHI 494
                                                  ++  G ++F+   + +  L + 
Sbjct: 539  IAAARRKLTAGDEPEIVPDALDEATLVEALADLGPAPAYSAEGYARFRAAAQELGLLRYR 598

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNE-------VIDVLDEFLNFTLRNE-QNSYSS 546
                S  D    +        +   R G +           LD   +   R   +   ++
Sbjct: 599  LDQ-SLPDLIADVERTIGLDVEVAVRAGRDGAGDAGLARGHLDALGDVAARFSGETPGAT 657

Query: 547  LQELISELEQYPPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            L   ++ L                     V+++T H AKGLE  VV +      V+    
Sbjct: 658  LSAFLAYLAAAEDEERGLAPGEVEVVEGAVQVLTAHAAKGLEWDVVAVAGLSRGVWPGPV 717

Query: 603  IKK--------MHIMPSLNDDPGIPIWIPQSKSR----NNIVSDLIKHLKKSTQEEYNRL 650
                       +   P   D  G+P+               ++D     +   + E  RL
Sbjct: 718  RNSDHWLGGLGVLPFPLRGDADGLPVLELAEAGEQRGVAQALADFTAAWRAHDEREERRL 777

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRT---------WYDMVYDSFHNDERVKKIKLT 701
             YV +TR    L+   +      K++   +           D       ++   +     
Sbjct: 778  AYVAVTRPRRLLLCSGYWWGEGTKRARGPSALLRDVHGACLDAGAGLVVDEWAAEPAPDA 837

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETI------------------------------- 730
             +   +  +  EW      +      E                                 
Sbjct: 838  VNPTTEVVLRAEWPADPLGDRRPALAEAATLVRRFLTDGDPTTRAATGAVATAAPGDDDA 897

Query: 731  --------------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                                +  +     P ++  P    + +   L             
Sbjct: 898  EDDDPEVVRWRREADLLLAERAELTRHAGPVEVALPAALSVTQLVALRRDPAALARSLRR 957

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                  N    RG   H  L+  F          +                   L  +  
Sbjct: 958  PLPTEPNPYARRGTAFHAWLEQRFGAGR------LLDVDELPGAADADAAPDEALAELQE 1011

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHV 889
               +            + V            +++ GR+D +       F + ++KT    
Sbjct: 1012 RFLHSEWAD------RTPVEAEVPFATVIAGVVVRGRMDAVFGRPGGRFDVVDWKTGRQP 1065

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLN-KAFAE 946
                       +A   +Y     +    P + +     YV +      P + L+      
Sbjct: 1066 AGPAAAAAAVQLA---VYRLAWAELAGVPVERVGAAFHYVRDGATVR-PVDLLDVAGLTA 1121

Query: 947  ISTKIP 952
            +   +P
Sbjct: 1122 LIESVP 1127


>gi|331019804|gb|EGH99860.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            lachrymans str. M302278PT]
          Length = 1230

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 122/1004 (12%), Positives = 273/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +  +  E          LT     +        +            +  +    
Sbjct: 272  EKLAAWAADETQEALDLGTGFTRLTPDGVAEAWKSDPPSHPAF--------AAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDGLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDGAL-HSAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEGNDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVESVNHVFTRAEQRPEGKGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA R A
Sbjct: 485  FLFRDEEGNQVPFSDALAQGRKETLEVDGAALTALTVWHLESEQPVSGVVYRQQLASRCA 544

Query: 351  YTISNMIGTDTIFSNGK------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++        G       +R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFTAPGNAQRGLRPADIAILVRDGKEAQAVRSQLTA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWEQRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +            +++        LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADG----------RAQISLQPTEALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      ++       +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNANSSMLHRSALGYLLGGGTALPESADL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN--- 749
                +D           P   P +   +  +             +       +       
Sbjct: 877  KVWLRDLAEGCSAIALQPVPEPTDDSFSAPRNEASLVKLLVPKRRAAENWWIASYSALRI 936

Query: 750  -----DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILVSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  IFTL-------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                          + ++ +   C +          ++ L  +  + L          + 
Sbjct: 997  AGNEGFANTAHDSVQLQDAVARRCNRRGWAGWINTLRDWLQHMLNMPLRLSPDSTPVALG 1056

Query: 839  TAMSCDSYS-EVSV---------------SGKINCPKKDI----------IISGRIDQIS 872
                 + Y  E+                   +                  +  G ID   
Sbjct: 1057 DLNQPNQYRVEMEFWFASTNVNVAQMDTLVRRFTHDNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +  +         +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGSDDDAYTDLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F  P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSASQGAYFTRPPRELIESLDLLFQGKP 1220


>gi|119896478|ref|YP_931691.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
 gi|119668891|emb|CAL92804.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
          Length = 664

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 106/589 (17%), Positives = 198/589 (33%), Gaps = 117/589 (19%)

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            YE   +    +DF+DLI     L ++ D    +R +    + ++L+DE QDT+  Q+ +
Sbjct: 169 DYERTLRAYQAVDFDDLISLPVRLFEENDE---VRERWQNRLRYLLVDEYQDTNRAQYRL 225

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           +R L                  AVGD+ Q+IY++ GA+ + +   +R   K         
Sbjct: 226 LRQLAGVRGA----------FTAVGDDDQAIYAWRGADVENLKLLQRDYPK--------L 267

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +  E        S                        
Sbjct: 268 RVIKLEQNYRSSRRILEAANVLIANNEKLFDKRLWSEH---------------------- 305

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    +Q + TS  D       A   A  +A  IS          +  +   + KD
Sbjct: 306 ------GPGEQIAVTSCRD-------ADHEAEWVAMKISA---------HKFENRTRFKD 343

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R      +I    R    + +I  V +      +   IKDL+A  R +++++DDL
Sbjct: 344 YAILYRGNHQARIIEQQLR----NQRIPYVMSGGQSFFEKPEIKDLIAYLRLLMNEDDDL 399

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+  +  P        I  +         +++    +           +   Q    +I
Sbjct: 400 AFIRAITMPRRGIGPSTIEALGHYAGGRHISLFAASFEEGVALHLGARQLEAVQQFTAFI 459

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLDEFLNFTLRNEQNSY 544
           + + H A+          +L A +        F +   +     + +F+ +  R  +   
Sbjct: 460 NRIQHRARREPAAQVLEDLLAAIRYEAWLFEHFDSREAESKWSNVRDFVGWLGRKGEEDG 519

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            +L EL   +       K     + + V++ T+H +KGLE P VFLV     +  H+   
Sbjct: 520 KNLIELTQTIALISMLDKEDA--DFDGVQLATLHASKGLEFPHVFLVGVEEGLLPHQSSI 577

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                               +   EE  RL+YVG+TRA   L I
Sbjct: 578 D-----------------------------------EDKVEEERRLMYVGITRAQRSLNI 602

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                    K+         + +   +     + +      ++      
Sbjct: 603 TWCERRKAGKEFRPCEISRFIAEMGGDLNIGDRKRNAPVSREEGRARLA 651


>gi|220920723|ref|YP_002496024.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060]
 gi|219945329|gb|ACL55721.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060]
          Length = 816

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 101/605 (16%), Positives = 187/605 (30%), Gaps = 114/605 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L A Y+E       +DF DL++    L ++      +         +IL+DE QDT++ Q
Sbjct: 238 LYAAYQERLATLNAVDFGDLLLLCLRLWRENPD---VLTGYQDRFRYILVDEYQDTNVAQ 294

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +R L +            R +  VGD+ QSIY + GAE   +LR +           
Sbjct: 295 YLWLRLLAQ----------GRRNVCCVGDDDQSIYGWRGAEVDNILRFEHDFP------- 337

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RST  IL     + +  E   G +                        
Sbjct: 338 -GAVVVRLERNYRSTGHILAAASTLIARNEGRLGKTL----------------------- 373

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   +   ++ + T  +DS  +       AR +  TI  +                
Sbjct: 374 -----RTEEGAGERVTVTGAWDSEEE-------ARLLGETIEGLQARGHAL--------- 412

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I VLVR       I      L     +           +   ++D +A  R   +  
Sbjct: 413 -SQIAVLVRISAQMREIEDRFVQL----GLPYRVIGGPRFYERAEVRDALAYLRLTANPA 467

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVI 485
           DDL+F  ++ +P     +  +  + +  R ++  +           +      S  + ++
Sbjct: 468 DDLAFERIINTPKRGLGDATLQALHSLSRRQSVPLLHAACLIVETEELKPKPRSTLRALL 527

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           +       + +     +    IL      + +      +    L+         E+    
Sbjct: 528 QSFSRWAKLLEIQPHAEVAQTILEESGYTEMWQKERTADAAGRLENLKELVRSLEE---- 583

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
              +L + LE     +  + +     V +MT+H AKGLE   VFL      +F ++    
Sbjct: 584 -FPDLPAFLEHIALVMDASEAEGGERVSLMTLHAAKGLEFDTVFLPGWEDGLFPNQR--- 639

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                         I    ++  EE  RL +VG+TRA  +  I 
Sbjct: 640 -----------------------------AIDESGRAGLEEERRLAHVGLTRARRRAKIS 670

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              N       +       V +   +   V +   + S     +            TP  
Sbjct: 671 FAVNRRIHGLWSSTIPSRFVDELPESSVEVIEAPASFSYGPSRFDRQPTPFGSSYATPGW 730

Query: 726 REETI 730
           +    
Sbjct: 731 QRAQA 735


>gi|157377279|ref|YP_001475879.1| ATP-dependent DNA helicase Rep [Shewanella sediminis HAW-EB3]
 gi|157319653|gb|ABV38751.1| ATP-dependent DNA helicase Rep [Shewanella sediminis HAW-EB3]
          Length = 670

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 111/633 (17%), Positives = 220/633 (34%), Gaps = 125/633 (19%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ-DEFIKIRDRFNTYKMFKSTLASLTL 129
           S F  Q        +T++      DL + L  +  +    +       K+ K   +   L
Sbjct: 106 SLFDDQDSLALLKELTEDEFDGDKDLLKMLMTAISNWKGDLVVPDQALKIAKDEQS--QL 163

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L   Y +  K    LDF+DLI+    LL+       +R +  + I ++L+DE QDT+
Sbjct: 164 FAGLYQRYAKHMKAYNALDFDDLILLPTLLLRHN---QEVRERWQKRIQYMLVDEYQDTN 220

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L            +      VGD+ QSIYS+ GA+P+ ++       K   
Sbjct: 221 TSQYELVKLLVG----------TRARFTVVGDDDQSIYSWRGAKPQNLVLLGTDFPK--- 267

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RS+  IL   + + +   +    +  S           G+   V 
Sbjct: 268 -----LKLIKLEQNYRSSQCILRAANILIANNPHVYDKALFSE-------LAYGEPLRVL 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             ++    A R+   I+ M+    +       
Sbjct: 316 I----------------------------AANEEQEAERV---IAEMVRHKFVGRT---- 340

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q  D  +L R    + L+           +I    +          IKD+MA  R ++
Sbjct: 341 --QYGDYAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFGRAEIKDIMAYLRLVV 394

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQ 482
           + +DD +F+ ++  P        + ++         +++E I +            +   
Sbjct: 395 NPDDDNAFLRVVNLPKRGIGPSTLERLGNYANERHISMFEAIFEAELNHHLPPAAMASLY 454

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTL 537
              +++ +    A    P D    ++               ++     +  + E   +  
Sbjct: 455 KFGQFVIDTGEKATRGDPVDAVKHLIRNINYEDYLYETSTSAKAAEMRMKNISELYRWVT 514

Query: 538 RN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 E +   +L E+++ L       + +   + ++V++MT+H +KGLE P VF+V T
Sbjct: 515 EMLEGDELDEGMTLPEVVTRLTLRDMMERNSEDESGDQVQLMTLHASKGLEFPYVFMVGT 574

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             ++  H+                                       +   EE  RL YV
Sbjct: 575 EERILPHQSSID-----------------------------------EDNVEEERRLAYV 599

Query: 654 GMTRASDQL--IICKHSNTSNEKKSNQRTWYDM 684
           G+TRA  +L  ++C+      E    + + + M
Sbjct: 600 GITRAQKELWFVLCRERRQFGETMRCEPSRFLM 632


>gi|289624144|ref|ZP_06457098.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648073|ref|ZP_06479416.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867953|gb|EGH02662.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 669

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 98/608 (16%), Positives = 200/608 (32%), Gaps = 120/608 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  +  +Y+   K    +DF+DLI+    L ++    A I  K   ++ ++L+DE QD
Sbjct: 162 QTAAIVYTYYQRTLKAYNAVDFDDLILLPVKLFQEH---ADILEKWQNKVRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L            S      VGD+ QSIY++ GA P+ ++  K      
Sbjct: 219 TNASQYLLVKLLIG----------SRHQFTVVGDDDQSIYAWRGARPENLMLLKDDYP-- 266

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST+ IL   + + S   +A                       
Sbjct: 267 ------SLKVVMLEQNYRSTSRILRCANVLISNNPHAFEK-------------------- 300

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            QLW ++    +                + +  +    A R+A  I  +           
Sbjct: 301 -QLWSEMGHGDEI--------------RVIRCRNEDAEAERVAMEILTLH---------L 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +      D  +L R      LI    +     +++    +          +KDLMA  R 
Sbjct: 337 RTDRPYSDFAILYRGNYQAKLIELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           +++ +DD +F+ ++  P        + K+         ++Y   ++        +    +
Sbjct: 393 LVNPDDDNAFLRVINVPRREIGSTTLEKLGNYATERKVSMYAATEEIGLGEHLDSRYTDR 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
            Q   +++  +        P      ++              +E      +  +   +  
Sbjct: 453 LQRFKRWMDGVRQQCAQNDPIAALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEA 512

Query: 536 T---LRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
               L  ++    +++E I +L       ++    +    V++MT+H +KGLE P VF++
Sbjct: 513 LKNTLEKDEEGGMTIEEAIGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIM 572

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      ++  T EE  RL 
Sbjct: 573 GMEEEILPH-----------------------------------RSSIEADTIEEERRLA 597

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA   L     +      +         + +   +D   +    T +  K     
Sbjct: 598 YVGITRARQTLAFTFAAKRKQYGEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGN 657

Query: 712 YEWSTHHP 719
              +    
Sbjct: 658 TALADIRA 665


>gi|118467070|ref|YP_883295.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium 104]
 gi|118168357|gb|ABK69254.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium 104]
          Length = 1096

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 143/1035 (13%), Positives = 294/1035 (28%), Gaps = 158/1035 (15%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
              +     L       +       + +           + +       ++  + ++S  L
Sbjct: 115  TYHAFAGSLLRDYGLLLPVEPDTRLLSETELWQLAFDVVNRYRGPLRTDKTPAAVTSMVL 174

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK--Y 132
                   ++++     +++    E+L  +       RDR  +  + + +      A+   
Sbjct: 175  RLWGQLAEHLVDTSQLRETHLELERLVHALPAGPYQRDRGPSQWLRRLSGTQSERAELVP 234

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            L    +E  +   V+DF    +      +       +   +      +L+DE QDT   Q
Sbjct: 235  LLEALDERMRAVKVMDFG---MQMASAARLAAAFPQVGADLRGRYRVVLLDEYQDTGHAQ 291

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
               + +L                L AVGD  QSIY + GA    + R      +   + G
Sbjct: 292  RIALSALFG------GGVDDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPR---SDG 342

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                ++EL  S+R+    L V + + +           S              GTV+   
Sbjct: 343  TPAPVLELRTSWRNPPRTLRVANAISAEARRR------SVAVHALCPRPDAPPGTVRCAL 396

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  +                             IA  I                 + 
Sbjct: 397  LPDMVAER--------------------------EWIADHIDAHYRRARAD------GVS 424

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                 VLVR+  D   I    R       I V       L     + +L+A+ R +    
Sbjct: 425  PPTAAVLVRRNADAAPIADALRA----RGIPVEVVGLAGLLSVPEVAELVAMLRLVADPT 480

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
               + + +L  P +     D+  +  +                  I+          + +
Sbjct: 481  AGAAAMRVLTGPRWRLGARDLAALWQRARALGGAGTAGGPATAEAIASAADPRNVEADAV 540

Query: 493  HIAQ---------------------------------FCSPHDFFTLI--LGAKKGRQQF 517
             +A                                       D    +  +       + 
Sbjct: 541  CLADAIADPGPAEGYSAAGYARIAALAAELSALRAHLDHPLGDLVAEVRRVMDLDCEVRA 600

Query: 518  ISRFGNEVIDVLDEFLNFTLRN---------EQNSYSSLQELISELEQYPPTIKR----A 564
             +  G    + LD F +              + ++ +S+  L++ L+             
Sbjct: 601  AAAAGWAGTEHLDAFADVVAGYAERADTGGTDASASASVAGLLAFLDVAESVENGLPAAP 660

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             +   + V+++TVH+AKGLE  +V +      VF     K   +  +    P +     +
Sbjct: 661  LAVARDRVQVLTVHSAKGLEWQLVAVAHLSGGVFPSTTAKTTWLTDAAELPPLLRGDRAR 720

Query: 625  ----------------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                             K  ++ +S+  + L++   +E  RLLYV +TRA D L++  H 
Sbjct: 721  PGALGIPVLDTSDVTNRKQLSDKISEHRRQLEQRRVDEERRLLYVAVTRAEDTLLVSGHH 780

Query: 669  NTSNEKKSNQRT------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
              +   K    +                      V          ++  L ++  +  W 
Sbjct: 781  WAATGIKPRGPSDFLCEIKDVIDASAAAGDPCGTVEQWAPAPADGERNPLRDNAVEAVWP 840

Query: 711  AYEWSTHHPE---NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN---PSTIDT 764
            A   ++   E      L R+    +  D     +   + +   + E   +    P  +  
Sbjct: 841  ADPLASRRGEVERGAALVRQAMAAEPGDPGADVEGWAADVDALLVERARVTGPPPQVLPG 900

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
            +   +    L+ +       + H+L       P     N   ++  K        E  +L
Sbjct: 901  QLSVSSLVGLARDPARAAQRLRHRLPSR--PEPHALLGNAFHAWVQKFYGAECLFELGDL 958

Query: 825  LLSIT-RLLENPMMTTAMSC------DSYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQ 876
              +    + +   +    +        + + V+V      P  D ++ GRID +   S  
Sbjct: 959  PGAADSDVGDTAELAELQAAFLESPWAARTPVAVEVPFEMPIGDTLVRGRIDAVFAESDG 1018

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFI 934
               + ++KT    P   E +      QL++Y          P  S+     YV      +
Sbjct: 1019 GATVVDWKTGA-PPDSPEAMRQA-AVQLAVYRLAWAALAKVPESSVRTAFHYVRARTTVV 1076

Query: 935  IPQNKLNKAFAEIST 949
                  +   A +  
Sbjct: 1077 PEALPTSDQLAGLLA 1091


>gi|15835512|ref|NP_297271.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
 gi|270285695|ref|ZP_06195089.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
 gi|270289703|ref|ZP_06196005.1| ATP-dependent helicase PcrA [Chlamydia muridarum Weiss]
 gi|301337090|ref|ZP_07225292.1| ATP-dependent helicase PcrA [Chlamydia muridarum MopnTet14]
 gi|7190926|gb|AAF39692.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg]
          Length = 634

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 96/547 (17%), Positives = 174/547 (31%), Gaps = 118/547 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ +   Y+E  +    LDF+DL+  T  LL+  +    I+ +       +LIDE QDT+
Sbjct: 164 ARAVYTEYQEQLRAANALDFDDLLFLTEKLLRIPE----IQQEYSNLWKALLIDEYQDTN 219

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L            S   +F VGD  QSIYS+ GA    +L  ++   K   
Sbjct: 220 HAQYLIAKRLAA----------SHNNIFVVGDPDQSIYSWRGANISNILNFEQDYPKAL- 268

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RS   IL   + +          +  S                  
Sbjct: 269 -------VVRLEENYRSCGTILEAANALIQNNSARLDKTLRSVK---------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          +   +T   D           A ++   ISN+            +
Sbjct: 306 -----------GPGDKIFCFTGKNDRDE--------AEQVLEEISNLHS---------YK 337

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I    I +L R    +                               I+D++A  R   
Sbjct: 338 DIPLSHICILYRTNFQSQSFE----AALLKRGYPYEIIGGISFYKRKEIQDILAFLRLFS 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH----- 483
           +  D  +F   +           +  +    +     + +           +        
Sbjct: 394 NNYDMAAFERTIGLKKCGIGATTLSSLMSYAKSMDLPILQACWDVLEKKPIRLTKKQQQG 453

Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLR 538
               + + H++  +   C  H+F    +                ++  + L++ L  T  
Sbjct: 454 LFSYLTHFHQMEKLYGNCDLHEFINETIRITDYLAILKEDPETYDDRKNNLEQLLAETQI 513

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++S  +L   + +L           +++H+ +++MT+H +KGLE PVVFLV     + 
Sbjct: 514 WGKSS-ENLPNFLEDLALKSSAD--ETASSHDRLKLMTIHNSKGLEFPVVFLVGLEENLL 570

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H + K MH                                     EE  RL YVG+TRA
Sbjct: 571 PHANSKGMH----------------------------------ENIEEERRLCYVGITRA 596

Query: 659 SDQLIIC 665
            + L + 
Sbjct: 597 QEYLYLS 603


>gi|160875207|ref|YP_001554523.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS195]
 gi|160860729|gb|ABX49263.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS195]
 gi|315267400|gb|ADT94253.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS678]
          Length = 1273

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 145/1031 (14%), Positives = 308/1031 (29%), Gaps = 173/1031 (16%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYF-QVSDINKYVSLSMETGNPTI-----LKKAQTLQQA 56
            +   LSL +S E   K  WP      ++ ++         G  T            L   
Sbjct: 225  DALALSLRQSLERF-KLAWPRGCDGLLALLHSLPLNGTRFGKATDKYPKLAAMFDALDNW 283

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                        L +  L++    +  +I         D  E+L                
Sbjct: 284  LAFGHGLPPLKELEALSLSELKLNKGGVIPSVSEAPLMDHMEQLATLIAAIKPAF----- 338

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                       +    ++  + + K++  VL  +DL+      L     +  +   +   
Sbjct: 339  ---------LYSAKLGISERFAQQKQQKNVLTPDDLLTTLASAL--HANNETLPKAVATR 387

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFV----GKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                LIDE QDT  +Q+ +   + +  +     G N   +  +L  +GD KQ+IY+F GA
Sbjct: 388  FPVALIDEFQDTDPLQFAIFSGIYQGRYSFEQQGNNDTENKLSLLMIGDPKQAIYAFRGA 447

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +    +  +   Q              L  ++RS+A+++  V+ +FS   +         
Sbjct: 448  DIHTYIEARHHTQAHY----------HLDTNYRSSANMVAGVNHLFSQHNDPFISQSIPF 497

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             +++  SS  G+              +      +    S  + L + ++  +LA   A  
Sbjct: 498  DSVKTPSSAKGK-------TLTEKTTNPAALRLRLLSESTENGLNKTTARHLLAEDAAAE 550

Query: 353  ISNMI-GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I+ ++        +     + AKDI +LVR R +  ++        +   I  V   R  
Sbjct: 551  ITRLLTDAANGECHSPNGPLIAKDIAILVRDRNEAAVMKTAL----SKRHIGAVFLSRDS 606

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D L  +++  + R + + +D+ +    L + L  +S + I          + + E   
Sbjct: 607  VFDTLEAREMALILRSLANPKDERALRSALATALLGYSAEQIHAFNQDEEHRQLLLEQFF 666

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
                    +       +  L+ +A           +L     +     +        L +
Sbjct: 667  NLHQVWQKR-----GIMPALLSLANSTK---LIDRLLHTASTQTDAQEQDATNGERRLTD 718

Query: 532  FLNFT--LRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGL 583
            F +    L+ +      +  L++  EQ           +    +  N V+I+T+H +KGL
Sbjct: 719  FRHLAELLQQKATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGL 778

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E PV F+        + +    M    + +      +W  +            +  K+ T
Sbjct: 779  EYPVCFVPFVSLARDNRRRPTPMLYHRTNDAGEQELVWDIEGTDEG------WERAKQET 832

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK---- 699
              E  RLLYV +TR      +   +++   K   +   ++            +       
Sbjct: 833  LAEDLRLLYVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGIGDSECDFARIC 892

Query: 700  --LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK--------- 748
                      E I+ +      +  PL   + I Q++  + + ++  +P +         
Sbjct: 893  NAAQQLAQDVEAISIDKVPDDIDERPLPSSQDIAQILSAKTLTRQYCTPWRVGSYSGLVK 952

Query: 749  ------------------NDINEPYILN-PSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                               +      L+ P     + +  + +  +  +  N G  +H +
Sbjct: 953  NTSHGKAAPGADDEALGTLEYMAARTLSIPDEPSHELQDGMLNRFNFERGANAGSFMHLV 1012

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------------- 836
            L+ I      +              + P  +   L      +L  P+             
Sbjct: 1013 LEEIDFTQADRDLPLQLPKAMLKYGIAPEWQT-VLHTWYLDMLHAPLGLMPSTVQSSTVP 1071

Query: 837  ------------------------MTTAMSCDSYSEVSV--------------------- 851
                                    +      D+  E+                       
Sbjct: 1072 TTMPSTSALENHSKTPKPEHPELCLAKLSPQDTLVEMEFYLPLSELKDTELNALLQQFGY 1131

Query: 852  SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIA 902
               +       ++ G ID     Q   +I +YK++H             +     + +  
Sbjct: 1132 ESTLKFDDLKGMLKGFIDLTFEYQGKYYIADYKSNHLGDNINAYHQSALQSAITDHRYDL 1191

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1192 QYILYSLALHR 1202


>gi|38233329|ref|NP_939096.1| putative helicase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199589|emb|CAE49245.1| Putative helicase [Corynebacterium diphtheriae]
          Length = 1076

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 127/937 (13%), Positives = 254/937 (27%), Gaps = 174/937 (18%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLD 148
                +         ++      R  + +++  + T         L    +     N ++ 
Sbjct: 189  TDIEEESAAFLAMIEDVEATSKRAPSKEVYKWRDTQVLRNELLPLVQQLKTHLADNHLMT 248

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F + +     L  +      +          I++DE QDT   Q  +++SL         
Sbjct: 249  FGEQMSLAARLAAENP---QVGASQRNRYQIIMLDEYQDTGHAQRVLLKSLFA------- 298

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                   + AVGD  QSIY + GA    + R            G   +  EL +SFR+  
Sbjct: 299  ----GTAVTAVGDPMQSIYGWRGATAANLERFLTDFGS----NGSPATKKELTVSFRNPP 350

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            ++L + ++V                    R  +  + G   L   V        + ++  
Sbjct: 351  EVLDLANRV--------SRELLGVPEDPRRPVQPLEPGPAALNGIVRLGFFPSMDEERSY 402

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
               +     ++                                      VLVRKRK +  
Sbjct: 403  VADHLAQAYEQHDGDH----------------------------PFTAAVLVRKRKHSAA 434

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            I    +       + V       L     + DL+A+   ++   D  + + +L  P    
Sbjct: 435  IALELQ----QRGVPVEIVGLAGLLGIPEVADLVAIATLLVRPYDTQAAMRILAGPSVGL 490

Query: 449  SEDDIFKICTQ----------------RHETETVYEYIQ--------------------- 471
               D+  +  +                R   E + + I                      
Sbjct: 491  GMADLMALSDRAYNLSGRDRRATTELSRDPLERLKQIIADTTPSDQDSIVGLAEAVADLD 550

Query: 472  ---------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                     +++  G  + + +   +  L   +   S  D F  I      R + + R  
Sbjct: 551  ERLDSSDGPRYSAKGSERLRTLAARLRYLRTNSLSNSLPDLFADIERVFGIRTEVLQRED 610

Query: 523  NEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVR 573
                       LD F        +   ++L  L+  L                   + V+
Sbjct: 611  PRSDGATGTAHLDRFAEVVQDFSRIPGANLSLLLDYLSLAESEENGLEPGEVQVTADRVQ 670

Query: 574  IMTVHTAKGLESPVVFLVDTGSQV--------FSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            I+TVH AKGLE   V ++   +           ++       +      D  +       
Sbjct: 671  ILTVHKAKGLEWQHVAVLHADANTYVAKASTWLTNASAVPSALRGDAKGDEDLVGAPVFE 730

Query: 626  KSRNNIVSDLIKHLKKS-------TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                +  ++L K  K           EE  RL YV +TRA  Q+++   ++ S ++    
Sbjct: 731  IDTPDTAAELAKAGKAHIADFKQVAAEENARLFYVAITRAEQQVLVTASADPSKKRPVLP 790

Query: 679  RTWYDMVYDSFHNDERVKKIKLTN----SINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              +  M+ + F +       +            E +                 +    L+
Sbjct: 791  YEYLTMLRNDFPDSVEEWHERGEAEDYVPPAPQEAVFPPNYIVVGAEDVFAAMQKQPDLI 850

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTI---------------------DTKGKTNLESL 773
             +  + ++    +   I E   L+   +                     +   +      
Sbjct: 851  SDDDLFERWEKEVSALIEEHEQLSAPVVAVNIGVELTATDIVNLAKNPENFAQRRRRPVP 910

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
               N    RG   H+ L+  F       +  +        +     +   L       L+
Sbjct: 911  FKPNSYAKRGTAFHEWLENRFGAEALLDETELPGI----GEELDDSDLDRLKE---AFLD 963

Query: 834  NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQE 892
            +            +   V           I+ GR+D +   S     + ++KT       
Sbjct: 964  SEW-------ADRTPEHVEHPFEVSIGRHIVRGRMDAVFKNSDGRWIVVDWKTGQPPTDN 1016

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPN--KSLVCLLIYV 927
             E    +   QL++Y              +  +  YV
Sbjct: 1017 HE--KESVAMQLAVYRLAWARLQGIDVDRVDAVFHYV 1051


>gi|300857961|ref|YP_003782944.1| hypothetical protein cpfrc_00543 [Corynebacterium pseudotuberculosis
            FRC41]
 gi|300685415|gb|ADK28337.1| hypothetical protein cpfrc_00543 [Corynebacterium pseudotuberculosis
            FRC41]
          Length = 1074

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 122/909 (13%), Positives = 259/909 (28%), Gaps = 174/909 (19%)

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            +    N ++ F + +     L ++      +        + +L+DE QDT   Q  ++RS
Sbjct: 239  QHLAYNNLMTFGEQMSLAARLAEENP---QVGASQRDRYSVVLLDEYQDTGHAQRVLLRS 295

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            L                + AVGD  QSIY + GA    + R +           +     
Sbjct: 296  LFS-----------GAAVTAVGDPMQSIYGWRGATSANLERFREDF----ALGEEPAQKR 340

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            EL +SFR+  ++L + ++V      A      +   +  R        T+  +     + 
Sbjct: 341  ELTVSFRNPPEVLQLANEVSREVLGAPDNPRRTVQPLSSREGAPHGEVTLGFFPSAEKER 400

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
            +   +   E++ +  +S                                          V
Sbjct: 401  EFVADQLAEAYKNRGESFTA--------------------------------------AV 422

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            LVRK++ +  I    +       + V       L D   + DL+A+   ++  +D  S +
Sbjct: 423  LVRKKRHSAPIALELQS----RGVPVEIVGLSGLIDIPEVADLIAIAAMLIRPQDTKSAL 478

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------------------------- 472
             +L  P       DI  +  +        +  ++                          
Sbjct: 479  RILAGPHVGLGAADILALADRAANLAGRGKAEREEKKTDPLERLEQIIAETLPKAPESVV 538

Query: 473  --------------------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                                +++ G+ + Q +   +  L   +   S  D F  I     
Sbjct: 539  GLAEAVADLDVPREEGAATRYSDEGLRRLQLLASELRYLRTHSLGHSLPDLFADIERVFG 598

Query: 513  GRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQ----YPPTIKR 563
             R + + R             LD F        +   ++L + +  LE            
Sbjct: 599  IRTEVLQREDPHSDGAPGTVHLDRFAEVISDFARVPNATLSQFLDYLELSRSQGDGLEPG 658

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV-------FSHKHIKKMHIMPSLNDDP 616
                  + V+I+TVH AKGLE  +V ++   S         +          +     + 
Sbjct: 659  EVQVRSDRVQILTVHKAKGLEWQIVSVMHADSSTYKTTTSTWLSNESAVPSALRGDARED 718

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN--------RLLYVGMTRASDQLIICKHS 668
               +  P     +      +K   ++   E+         RL YV +TRA +++++   +
Sbjct: 719  DSLVGAPVWYIDSAESPADLKKQGEAHIAEFRAVEEEENARLFYVALTRAEERVLVTAST 778

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA----YEWSTHHPENTPL 724
            + +           DM+   F +         ++   +          +       +   
Sbjct: 779  DITKASPPGPYAHLDMLRTKFPDCVVEWFDGESDDALEPPLPEIGVFPQELRPEGADAVK 838

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINE---------------------PYILNPSTID 763
                 + +L+++ ++ ++    +   I E                        L+     
Sbjct: 839  AAMVDLPELIEDGELFERWEQEVTALIEEHHQLSTPVVPVELGLELTASDIVNLSQDPQA 898

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
               +         N    RG   H+ L+        +          +   +  A +   
Sbjct: 899  FARRRRRPVPFKPNSYAKRGTAFHQWLEN-------RFGATALLDADELPGIDDALDGTE 951

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFE 882
            L     R L++            +   V         + I+ GR+D +         + +
Sbjct: 952  LETLKARFLDSEW-------ADRTPEYVEHPFEVSIGEHIVRGRMDAVFRDADGRWIVVD 1004

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKL 940
            +KT     +  E    +   QL++Y              +  L  YV     +   +   
Sbjct: 1005 WKTGQPPTEAAERRSVS--LQLAVYRLAWARLQGVDPSEVQALFHYVGRNFSYRPSELPD 1062

Query: 941  NKAFAEIST 949
              + A +  
Sbjct: 1063 EASLARMLA 1071


>gi|239982164|ref|ZP_04704688.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1079

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 131/975 (13%), Positives = 276/975 (28%), Gaps = 106/975 (10%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  +  + + + L      + +  + +    +       L  A+ L+  S  +       
Sbjct: 49  AAVDLRDRMAQRLSTATAPRATTFHSFCYALVRAHQDADL-FAEPLRLLSGPEQDVAVRE 107

Query: 68  LLSS---------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+            +      +  + T+    +   +      ++   + +        
Sbjct: 108 LLAGQIELGRQGRARVHWPDELRACLTTRGFADEVRAVL-----ARSRELGLGADALAEF 162

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +      + A    A Y +       LD+ +L+     L ++ + +     ++ +  +
Sbjct: 163 ARRGGRPDWSAAASFLAEYLDLLDAQGTLDYAELVHRAVLLAERPETAR----QLAETYD 218

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + +DE QDT   Q  ++R+L  +           RTL A GD  QSIY+F GA+   +L
Sbjct: 219 AVYVDEYQDTDPAQVRLVRALAGNHGPAVPGAGGGRTLVAFGDPDQSIYAFRGADVNGIL 278

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                 ++     G    +  L    RS A ++     V       +  ++         
Sbjct: 279 EFPETFRR---ADGAPAPVAVLTTGRRSGAHLVEATRLVTRRMPLTRLSADTVRAHRSLS 335

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MI 357
            +R G       +    ++ D+  +  + +         + +            +   + 
Sbjct: 336 PARDGGRVEAYTYPTTGAELDNIADILRRAHLEEGVPWGEMAVLVRSGGHTIPAVRRALT 395

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT--RFLKNDYKISVVGNDRFILTDH 415
                       +    +  V           T     R  +    +     D       
Sbjct: 396 SAGVPLDIDGNDLPLRHEPAVAPLLTALRAAATAALQDRAEEEAGPVPEPEPDAGTQDTA 455

Query: 416 LAIKDLMALGRFILSQ--EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
            A  D       + S     D +    L   L +        +               + 
Sbjct: 456 PAWLDTETALTLLASPLAALDAADQRRLGRALRDEERAAGNPLPPPSDTLLARALAEPER 515

Query: 474 ANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISR------FG 522
                  + H  + + EL+  A+       S  +    +       Q+           G
Sbjct: 516 LVTH-EGYAHGARLLGELLRRARTLLAKGGSAEEALWELWDGTTWPQRLERSARRGGAAG 574

Query: 523 NEVIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMT 576
                 LD     F       E+         ++E+E            +A  + VR+MT
Sbjct: 575 RNADRDLDAVCALFATAARAEERTGGRGALNFLAEIEAQDIAADTLTRRAARPDAVRLMT 634

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            H +KGLE  +V +      V+     +   +        G+   +P             
Sbjct: 635 AHRSKGLEWRLVVVAGVQEGVWPDLRRRGSLLEADRIGRDGLAEPLPPG----------- 683

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                +   E  RL YV  TRA+++L++      + +     R   ++        + V 
Sbjct: 684 -----ALLAEERRLFYVAATRAAERLVVTAVKAPAEDGDQPSRFLSEL----GVEPKDVS 734

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP---------- 746
                             +T  P  +   RE    +L     +  +   P          
Sbjct: 735 SRPRRPLSVAALVAELRATTVDPRVSATLREAAAHRLAKLAALTDEDGRPLVPTAHPDRW 794

Query: 747 -----------IKNDINEPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRGLII 786
                         D + P +L+ S +D       L+  L                G ++
Sbjct: 795 WGMREPTRSQVPLRDRDAPVVLSGSALDQLANTCALQWFLGREVKADAPASAAQGFGNVV 854

Query: 787 HKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
           H L  +V            +            +A     +E +N   ++ R LE   +  
Sbjct: 855 HVLADEVASGRTPADLDVLMERLDSVWDALAFDAPWKSVQEKENARQALERFLEWHTLDR 914

Query: 840 AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPY 898
           A      SE      +     ++ I G +D++        ++ ++KT    P   E    
Sbjct: 915 AGRTPVASEHDFDITLGAGPYEVRIRGSMDRVEQDPRGRAYVVDFKTGKQAPTAAEV--- 971

Query: 899 THIAQLSIYEKILKD 913
            H  QL++Y+  + +
Sbjct: 972 AHHPQLAVYQLAVTE 986


>gi|281423244|ref|ZP_06254157.1| putative UvrD/REP helicase domain protein [Prevotella oris F0302]
 gi|281402580|gb|EFB33411.1| putative UvrD/REP helicase domain protein [Prevotella oris F0302]
          Length = 1075

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 125/874 (14%), Positives = 279/874 (31%), Gaps = 100/874 (11%)

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAK 131
             P K II ++ +   P       +     ++             +          L L  
Sbjct: 285  DPAKWIIKKKAHAGEPIYDLVCDQLMPMLVQSERIRRQQCRLYKSADLTLRHLNQLRLLD 344

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDT 188
             +    EE  ++        ++ +T  LL+     + S +I  KI  ++ +I+IDE QDT
Sbjct: 345  SIGDKVEELNRELNRF----MLSDTQTLLRSMIGENDSPFIFEKIGTQLRNIMIDEFQDT 400

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S +QWE  + L  +     + +        VGD KQSIY +   + + +   +       
Sbjct: 401  STVQWENFKVLLLETMSHDSNN------LIVGDVKQSIYRWRSGDWRLLNDIENEFGA-- 452

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                Q+ +I  L  + RS  +I+T  +  F      + L             +      +
Sbjct: 453  ----QEINIKPLKTNRRSEKNIITFNNAFFEKAARQEYLQLKEEAENNAEQLQKAYEDVI 508

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            Q       +  +                  ++      + +A  +  +I           
Sbjct: 509  QDIPAEKEECGTVEVELL---------PNDDAYEEQTFKLVADKVQALIDAG-------- 551

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              ++  DI +LVR       I      ++N   + +V  + F L    A+  +++    +
Sbjct: 552  --VKENDIAILVRYNATIQEIGDYF--MRNMPDVHLVSEEAFHLDASQAVNIIISGMMVL 607

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF--QHVIK 486
             + EDD++                + K+  +  +  ++ +      N  +  +  +  + 
Sbjct: 608  NNPEDDIAK-------------ATLTKLYMKSIKDNSLLDSDILLKNNSLEDYLPKQFLN 654

Query: 487  YIHELIHIAQFCSPHDFFTLI-LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
                L+ ++        + +  L    G+  +           +  F +      Q+   
Sbjct: 655  QREYLLGLSLIDMAEALYHIFDLQTLTGQTAY-----------ICTFYDKLNEFMQDDVP 703

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             L   + +            S+++  V ++T+H +KGLE   V +     ++     I  
Sbjct: 704  DLHSFLEQW-TDNIHSSSIQSSSNEGVSLVTIHKSKGLEFDHVIVPFCDWKLEKSNTIWC 762

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                   +  P +PI   + + +N+I  +           +   LLYV  TRAS  L I 
Sbjct: 763  KPQEEPFSALPIVPIDFNKKQMKNSIYENDYVDEHFQNIVDNLNLLYVAFTRASRGLYIY 822

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                     +S       ++ +              ++ NK+E I + +           
Sbjct: 823  GKRGDKGGGRS------WIIENCLQAVATDLNAHYEDTGNKEESIHFAFGEGLSIAPNKT 876

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
            ++++        +  +      +  +              G    E +L        G I
Sbjct: 877  KKQSENIFNQSAENIEITVENYERKVEFKQSNKSKDFVNAGIEEDEEMLKKKSYIQLGSI 936

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD- 844
            +H +   I    +      + +   +            L  +I   L +  +++  S   
Sbjct: 937  MHAIFSTI--KTKEDIGTALRNLEEEGILYNKVITQDKLRKTIEERLNDSRVSSWFSKRW 994

Query: 845  -SYSEVSV--SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
              ++E S+     +    ++     R D++    + + + +YK               H 
Sbjct: 995  TLFNECSILKVNPLTDKVEER----RPDRVMTDGKEMIVVDYKFGSP--------KEEHK 1042

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            AQ+  Y  +L +   + ++   L Y+   K+  +
Sbjct: 1043 AQVKEYMDLLHEM-GHHNITGYLWYLFSNKIIKL 1075


>gi|166154823|ref|YP_001654941.1| DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|166155698|ref|YP_001653953.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301336102|ref|ZP_07224346.1| DNA helicase [Chlamydia trachomatis L2tet1]
 gi|165930811|emb|CAP04309.1| DNA helicase [Chlamydia trachomatis 434/Bu]
 gi|165931686|emb|CAP07263.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 634

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 174/547 (31%), Gaps = 118/547 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + + A Y+E  +    LDF+DL+  T  LL+  +    ++ +       +LIDE QDT+
Sbjct: 164 TRTVYAEYQEQLRAANALDFDDLLFLTEKLLRIPE----VQQEYANHWKALLIDEYQDTN 219

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + + L            +   +F VGD  QSIYS+ GA    +L  ++   +   
Sbjct: 220 HAQYLIAKRLAA----------AHNNIFVVGDPDQSIYSWRGANISNILNFEQDYSQAL- 268

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RS   IL   + +          +  S                  
Sbjct: 269 -------VVRLEENYRSCGTILEAANALIQNNSARLEKTLRSVK---------------- 305

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          +   +T   D           A ++   ISN+            +
Sbjct: 306 -----------GPGDKIFCFTGKNDRDE--------AEQVLEEISNLHS---------YK 337

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I   DI +L R    +                               I+D++A  R   
Sbjct: 338 DIPLSDICILYRTNFQSQSFEAAL----LKRGYPYEIIGGISFYKRREIQDILAFLRLFS 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH----- 483
           +  D  +F   +           +  +    +     + +           +        
Sbjct: 394 NNYDMAAFERTISLKKCGIGATTLAALMNYAKITDLPILQACWDVLEKKSIRLTKKQQQG 453

Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLR 538
               + + H++  +   C  H+F    +                 +  + L++ L  T  
Sbjct: 454 LFSYLTHFHQMEQLYGNCDLHEFINETIRITDYLSILKEDPETYEDRKNNLEQLLAETQI 513

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             ++S  +L   + +L           +++H+ +++MT+H +KGLE PVVFLV     + 
Sbjct: 514 WGKSS-ENLPGFLEDLALKSSAD--ETASSHDRLKLMTIHNSKGLEFPVVFLVGLEENLL 570

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H + K MH                                     EE  RL YVG+TRA
Sbjct: 571 PHANSKGMH----------------------------------ENIEEERRLCYVGITRA 596

Query: 659 SDQLIIC 665
            + L + 
Sbjct: 597 QEYLYLS 603


>gi|33860862|ref|NP_892423.1| UvrD/REP helicase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33633804|emb|CAE18763.1| UvrD/REP helicase [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
          Length = 802

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/571 (16%), Positives = 188/571 (32%), Gaps = 96/571 (16%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL-TEDFFVGKNTHSSPRTLFAVGDEKQS 225
             +R    +   H+L+DE QDT+  Q+E+I+ +   +    K    + R++F VGD  QS
Sbjct: 243 DLVRDYWHKRFQHVLVDEYQDTNRTQYELIKLITAGNTEPNKFCEWNDRSIFVVGDADQS 302

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IYSF  A+ + ++  +   +   +N  QK S+++L  ++RS+++ILT  + +        
Sbjct: 303 IYSFRAADFRILIGFQEDFKNS-SNNNQKASLVKLEENYRSSSNILTAANSLIENNTERI 361

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                ST                                +     S  D + +       
Sbjct: 362 DKVLRSTR----------------------------EEGELLKLLSCDDEISE------- 386

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  I   + ++        N        K+  +L R R  + ++          ++I   
Sbjct: 387 AEAITTKLRSL--------NNYNNQPIWKNFAILYRTRAQSRVLEESL----VRWRIPYT 434

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETE 464
                   D   +KD +A  + +++  D++S + ++  P     +  I K+         
Sbjct: 435 IFGGLRFYDRREVKDAVAYLKVLVNSSDNISLLRIINVPRRGIGKTTIQKLNELSNKLNI 494

Query: 465 TVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            ++E I    +                + +++L+   +   P     LIL         +
Sbjct: 495 PLWEVINDKQSLDETIGRSSKGINKFTELMNDLLCYIENSGPAQILQLILEKSGYLSDLL 554

Query: 519 SRFGNEVID---VLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           +    E  D    L E +N   + E+      ++  +S          +    + N V +
Sbjct: 555 TSGSEESEDRRNNLQELINAATQFEEETENPDVEGFLSTAALTTDNDTKK--NHPNSVTL 612

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H +KGLE   VF+      +F          +                         
Sbjct: 613 MTLHNSKGLEFQNVFITGLEQGLFPSHRSIDTPSL------------------------- 647

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                     EE  RL YVG+TRA +++ +             + T   +       +  
Sbjct: 648 ---------LEEERRLCYVGITRAKERVFLSHARERRLWGGMREATIPSIFLSEIPEELI 698

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
             ++  +   +       +  T        E
Sbjct: 699 DGELPQSGGASIRRDRHLDRLTRVDRKDLNE 729


>gi|103488489|ref|YP_618050.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
 gi|98978566|gb|ABF54717.1| ATP-dependent DNA helicase, Rep family [Sphingopyxis alaskensis
           RB2256]
          Length = 770

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 134/799 (16%), Positives = 239/799 (29%), Gaps = 156/799 (19%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
           +  WP     V+  NK      E          + +  A +       F  + +  L + 
Sbjct: 65  RRAWPSEILAVTFTNKAAREMRER-------IGRMIGDAVEGMPWLGTFHSICARMLRRH 117

Query: 78  FTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-----YKMFKSTLASLTL 129
                 Q N    + + +   LK+ ++    +  +   R        +K    T A L  
Sbjct: 118 AELVGLQSNFTILDTDDQLRVLKQLIQAEGLDEKRWPARQLAGLIDKWKNRGLTPADLDA 177

Query: 130 AKY----------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           A              A Y+   K     DF DL+++   +LK       +  +      +
Sbjct: 178 ADKEAYADGKGQHFYALYQARLKTLNACDFGDLLLHMLVILKTH---RDVLEQYQARFKY 234

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           IL+DE QDT+  Q+  +R L +          S + +  VGD+ QSIYS+ GAE   +LR
Sbjct: 235 ILVDEYQDTNASQYLWLRLLAQ----------SRKNICCVGDDDQSIYSWRGAEVANILR 284

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            ++             ++I L  ++RST  IL     + +   +  G +           
Sbjct: 285 FEKDFP--------GATVIRLEQNYRSTPQILAAASALIAQNSDRLGKT----------- 325

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW ++ +    +     +                  ARRI   +  +   
Sbjct: 326 ----------LWTELDAGDKLRVVGVWDG--------------PEEARRIGEELETL--- 358

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                  + R +      +LVR +  T               +       F   +   I+
Sbjct: 359 -------QHRGVNLDRTAILVRAQFQTREFEDRFIA----IGLPYRIVGGFRFYERAEIR 407

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQK 472
           D +A  R + S  DDL+F  ++  P     +  + +I    R E   ++          +
Sbjct: 408 DALAYLRLVQSSADDLAFERIVNVPKRGLGDKALQRIHQFARAERAPLFHAASRITETDE 467

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVL 529
                  +    I  +          S  +   LIL          +    E     + L
Sbjct: 468 LTPQARRQLASFIAQMRNWQAKVGELSHPELTQLILDESGYTAMLQADRSAEAAGRLENL 527

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            E +      +         L + LE     + R +  +   V IMT+H AKGLE   VF
Sbjct: 528 SELVRAMEEYDS--------LEAFLEHVSLVMDRDNDESAETVTIMTIHAAKGLEFDHVF 579

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L      VF  +                                  +     ++ EE  R
Sbjct: 580 LAGWEDGVFPSQR--------------------------------AMDEGGTASLEEERR 607

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YV +TRA  +  I   +N     +     W   +   F  +     I++ NS    + 
Sbjct: 608 LAYVAITRARRRASIYHAAN-----RRIYGQWMSSIPSRFIAEIPPDHIEMENSFGGGQS 662

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
           +     +   +      E    + M      ++  +        P    PS         
Sbjct: 663 LWRANWSAQGDPFAHVAERQPSRTMTRGPAWQRAVAASNTVTRAPA---PSERGPAASVG 719

Query: 770 LESLLSDNQTFNRGLIIHK 788
            +             + H+
Sbjct: 720 AKPRADLAIGQR---VFHE 735


>gi|254282526|ref|ZP_04957494.1| DNA helicase II [gamma proteobacterium NOR51-B]
 gi|219678729|gb|EED35078.1| DNA helicase II [gamma proteobacterium NOR51-B]
          Length = 718

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 115/745 (15%), Positives = 227/745 (30%), Gaps = 137/745 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +     S                +  + +++ Q          
Sbjct: 30  GAGSGKTRVLVHRIAWLIRAENYSPNAVLAVTFTNKAAREMRGRIESMLQLPTHGLWIGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF----------- 114
           F  L+   L      +   + Q       D + +L K     + + +             
Sbjct: 90  FHGLAHRLLKA--HWKAANLPQNFQILDSDDQLRLVKRVCRELDLDESRWPPKQAQWYIN 147

Query: 115 ----NTYKMFKSTLASLTLAKY----LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                  +          L       + + YE A ++  ++DF +L++  ++L      +
Sbjct: 148 GQKDEGLRARHIEPPFGDLYAKTMLTIYSAYETACERGGLVDFAELLLRAHELWLNSPET 207

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                        IL+DE QDT+ IQ+  +R L  +             + AVGD+ QSI
Sbjct: 208 ---LAHYQGRFRAILVDEFQDTNTIQYAWLRVLAGEQIP----------VVAVGDDDQSI 254

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+ + + R ++             +++ L  ++RST  IL+  + + +      G
Sbjct: 255 YGWRGAKIENIQRFQQDF--------ASATVVRLEQNYRSTQTILSAANGLIAHNFGRLG 306

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                 QLW           + +  S  + F+   +       A
Sbjct: 307 K---------------------QLW-------TDGESGEPISLYAGFNEQDE-------A 331

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R I       I                  + +L R    + ++            +    
Sbjct: 332 RFIVERAQGWIDDGN----------HRASVAILYRSNAQSRVLEEAL----IRAGLPYRI 377

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETET 465
                  + L I++ +A  R +L++ DD +   ++ +P        I K+    R    +
Sbjct: 378 YGGQRFYERLEIRNALAYMRLMLTRTDDPALERVINTPPRGIGSKTIDKLREIARDHGVS 437

Query: 466 VYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQ 516
           ++         +      ++        I EL       S       ++ A       + 
Sbjct: 438 LWAAIGIAREQKLLTTRALTAVTGFQVLIDELDSTTLSYSLEALTEHLINASGLLDYHRA 497

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIM 575
                G   ++ L+E ++           SL  L   L+            A+ + V++M
Sbjct: 498 EKGERGQARVENLEELVSAAKTFIAED-ESLSPLQQFLDNAALDAGDAQAEAHEDSVQLM 556

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P+VFL      +F H+   +                              
Sbjct: 557 TLHSAKGLEFPLVFLAGMEENLFPHRMSVEEPG--------------------------- 589

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    EE  RL YVG+TRA  QL++    +       +  T    V +        
Sbjct: 590 -------RLEEERRLCYVGITRAMQQLVMTYAESRRLHGSESYNTPSRFVREIPAELIHE 642

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPE 720
            ++  + S     +       H   
Sbjct: 643 VRLGSSVSRPLSTFAPDPSRAHDEA 667


>gi|302330242|gb|ADL20436.1| Putative helicase [Corynebacterium pseudotuberculosis 1002]
          Length = 1074

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 122/909 (13%), Positives = 259/909 (28%), Gaps = 174/909 (19%)

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            +    N ++ F + +     L ++      +        + +L+DE QDT   Q  ++RS
Sbjct: 239  QHLAYNNLMTFGEQMSLAARLAEENP---QVGASQRDRYSVVLLDEYQDTGHAQRVLLRS 295

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            L                + AVGD  QSIY + GA    + R +           +     
Sbjct: 296  LFS-----------GAAVTAVGDPMQSIYGWRGATSANLERFREDF----ALGEEPAQKR 340

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            EL +SFR+  ++L + ++V      A      +   +  R        T+  +     + 
Sbjct: 341  ELTVSFRNPPEVLQLANEVSREVLGAPDNPRRTVQPLSSREGAPHGEVTLGFFPSAEKER 400

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
            +   +   E++ +  +S                                          V
Sbjct: 401  EFVADQLAEAYKNRGESFTA--------------------------------------AV 422

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            LVRK++ +  I    +       + V       L D   + DL+A+   ++  +D  S +
Sbjct: 423  LVRKKRHSAPIALELQS----RGVPVEIVGLSGLIDIPEVADLIAIAAMLIRPQDTKSAL 478

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------------------------- 472
             +L  P       DI  +  +        +  ++                          
Sbjct: 479  RILAGPHVGLGAADILALADRAANLAGRGKAEREEKKTDPLERLEQIIAETLPKAPESVV 538

Query: 473  --------------------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                                +++ G+ + Q +   +  L   +   S  D F  I     
Sbjct: 539  GLAEAVADLDVPREEGAATRYSDEGLRRLQLLASELRYLRTHSLGHSLPDLFADIERVFG 598

Query: 513  GRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQ----YPPTIKR 563
             R + + R             LD F        +   ++L + +  LE            
Sbjct: 599  IRTEVLQREDPHSDGAPGTVHLDRFAEVVSDFARVPNATLSQFLDYLELSRSQGDGLEPG 658

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV-------FSHKHIKKMHIMPSLNDDP 616
                  + V+I+TVH AKGLE  +V ++   S         +          +     + 
Sbjct: 659  EVQVRSDRVQILTVHKAKGLEWQIVSVMHADSSTYKTTTSTWLSNESAVPSALRGDARED 718

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN--------RLLYVGMTRASDQLIICKHS 668
               +  P     +      +K   ++   E+         RL YV +TRA +++++   +
Sbjct: 719  DSLVGAPVWYIDSAESPADLKKQGEAHIAEFRAVEEEENARLFYVALTRAEERVLVTAST 778

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA----YEWSTHHPENTPL 724
            + +           DM+   F +         ++   +          +       +   
Sbjct: 779  DITKASPPGPYAHLDMLRTKFPDCVVEWFDGESDDALEPPLPEIGVFPQELRPEGADAVK 838

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINE---------------------PYILNPSTID 763
                 + +L+++ ++ ++    +   I E                        L+     
Sbjct: 839  AAMVDLPELIEDGELFERWEQEVTALIEEHHQLSTPVVPVELGLELTASDIVNLSQDPQA 898

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
               +         N    RG   H+ L+        +          +   +  A +   
Sbjct: 899  FARRRRRPVPFKPNSYAKRGTAFHQWLEN-------RFGATALLDADELPGIDDALDGTE 951

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFE 882
            L     R L++            +   V         + I+ GR+D +         + +
Sbjct: 952  LETLKARFLDSEW-------ADRTPEYVEHPFEVSIGEHIVRGRMDAVFRDADGRWIVVD 1004

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKL 940
            +KT     +  E    +   QL++Y              +  L  YV     +   +   
Sbjct: 1005 WKTGQPPTEAAERRSVS--LQLAVYRLAWARLQGVDPSEVQALFHYVGRNFSYRPSELPD 1062

Query: 941  NKAFAEIST 949
              + A +  
Sbjct: 1063 EASLARMLA 1071


>gi|218885868|ref|YP_002435189.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756822|gb|ACL07721.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1161

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 147/970 (15%), Positives = 279/970 (28%), Gaps = 92/970 (9%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             +   + +   L  +     +D+    +          L  A  L +          FS 
Sbjct: 233  PDVDTDALAAKLVAIH----ADMQDATATLSRILAEEQLSAAANLHKFLDKCAENSAFSP 288

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
            LS     +K      ++     K S D +      +D       R    +          
Sbjct: 289  LSKSAYLEKGGLDDCLLKASKGKGSDDARAAFDAWRDACNDFAVRGRLIQRALQVAPLAG 348

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            LA+ +  H  + +++   L    + ++  D+L      +    ++   + H+LIDE QDT
Sbjct: 349  LARAMATHLPDFQRREGKLPQPLIPLHARDVLNGEFGVSEAFCRMGTRLAHVLIDEFQDT 408

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S  QW  I  L  +             L  VGD KQ+IY + G +               
Sbjct: 409  SRDQWAAIEPLAVECLSRGGG------LTWVGDVKQAIYGWRGGDSALFDDILA--SPAL 460

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
            T          LP ++RS A I+   + VF+  ++        +  +  ++         
Sbjct: 461  TAIVPDPQRETLPRNWRSRAAIVRHNNTVFAQLDDPLRARGVLSAMLGDKTP---DHVLD 517

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            +    V            +  ++    +            +   +   +    +     +
Sbjct: 518  EAAASVARAFAGAAQEVPDRDSAQGGLVRIVPVHGEDNGDLRDKVRQQLRALFMDDLAAR 577

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R    +D+ VLVRK  ++  +         D+ + VV  +   L DH  +   +AL  F+
Sbjct: 578  RP--WRDVAVLVRKNDESAQVASWL----MDWGVPVVTENSLRLADHPLVTQTVALLAFL 631

Query: 429  LSQEDDLSFVCMLKSP-----LFNFSEDDIFKICTQR-HETETVYEYIQKFANCGISKFQ 482
                + L+   +L        +   S+  +      R           +       + F 
Sbjct: 632  DYPPNALALWEVLTGVELFGGISGLSDHALRDWLADRCARPADDPRGGKGLLADFRATFP 691

Query: 483  HVIK-YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
               + ++      A    P+D    I    +  Q+     G      +  FL      E 
Sbjct: 692  VAWETWLAPFYARAGLMGPYDTVREIFERFRVAQRHPEDIG-----YVRRFLEVVHNAES 746

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +SL   +    +     K       + VR+MT+H +KGLE PVV +        +  
Sbjct: 747  RGLTSLATFLEFWVESGGEEKVPMPEAMDAVRVMTMHKSKGLEFPVVVIPFHHQPDRTDP 806

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             +    +       P  P    +             H + +   E   LLYVG TR  D+
Sbjct: 807  PLVVAELDGQPLLAPLCPEMGDR-----------YHHAQAAAAAEKLHLLYVGWTRPVDE 855

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            L     S    E+ S+       +      D   + +            A+  S      
Sbjct: 856  LHAYVTSTPFAERSSSLLAGVRALLTGCAIDTGQEYVAGV-VPPARATDAHAGSDTEDTR 914

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN---- 777
                 E   +    +         P       P  L              +         
Sbjct: 915  EAPRDEAAAQAAPPDAPQAVPAPLPSPARAPAPGPLPGHAAAHAPDLPSPAAPWRPMQWL 974

Query: 778  ---------------QTFNRGLIIHKLLQVI---FTLPEHKRKNFITSYCTKNAKLWPAK 819
                               RG+++H  L+ +    T  +   +            +   +
Sbjct: 975  PRLKIFRNQLEEFTFTERRRGMLVHACLEQLRLTGTPDQDAARAVAHGMRAFPLPVPDPE 1034

Query: 820  EYKNLLLSITRLLEN-PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI---DQISISQ 875
               N L ++   L   P      +     E S+              G I   D +    
Sbjct: 1035 ATANELTAMLAWLAALPQAAHWFTHGV-PEQSIMDA----------QGSIHRTDLMVDDG 1083

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVF 933
            +   + E+KT              H+AQ+  Y  +L ++       +  +L+Y+    V 
Sbjct: 1084 ETCTVVEWKTGRPSDD--------HVAQVRRYLGLLAEATGRGPAGVRGVLVYLDGRTVR 1135

Query: 934  IIPQNKLNKA 943
             +     + A
Sbjct: 1136 PVALRTADAA 1145


>gi|255028197|ref|ZP_05300148.1| hypothetical protein LmonL_01199 [Listeria monocytogenes LO28]
          Length = 712

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 95/714 (13%), Positives = 223/714 (31%), Gaps = 100/714 (14%)

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             +L    +   D++   +         S  +     + +R IA  I  MI       + 
Sbjct: 2   ETELLLIDMKTEDTETEDEL--------SPQELQKNQVESRAIAMKIREMIDNKFPIYDK 53

Query: 367 K---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
           K    R IQ +DI++L R     P +    +       I    N+     +   +  ++A
Sbjct: 54  KLKQNRPIQYRDIIILSRAMTSAPDMEEAMKV----QDIPFYANNNSGYFETTEVATMIA 109

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYIQKFANCGISK 480
           L + + +   D+    +L+SP+   +E+++ +I   + +    + +  Y     +   +K
Sbjct: 110 LMKVVDNPYQDIPLAAVLRSPIIGLNEEELGQIRMAKKKGYFYDALLTYKDITVSETANK 169

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539
               ++ ++    ++   +       I       +       G +    L    +   + 
Sbjct: 170 ISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYDRANQY 229

Query: 540 EQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
           E+ S+  L   +  +E+           +      + VR+MT+H +KGLE PVV +    
Sbjct: 230 EKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVSGLS 289

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            +        K  +                      +   + +   +    E  R+LYV 
Sbjct: 290 RKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMIAEEMRVLYVA 349

Query: 655 MTRASDQLIICKHSNTSNE-------------------KKSNQRTWYDMVYDSFHNDERV 695
           +TRA ++LI+        +                    ++  + + D + ++       
Sbjct: 350 LTRAEEKLILVATVPDFEKTSKNWLQVAKEKETILPAATRAKAKCYLDWIGNATIRHPAF 409

Query: 696 KKI------------------------KLTNSINKDEWIAYEWSTHHPENTPLERE---- 727
           K++                         LTN + + E   +  +    +  P++      
Sbjct: 410 KELLCEEIIQTLATEMKLQIEIKTKEMFLTNELERAESDNWLENIKEHQPVPIQSPYKDE 469

Query: 728 -----------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                      E   ++  +Q + +        D      L                 + 
Sbjct: 470 IQRYMEYEYQNEAATEIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSLDRPKFLQKNK 529

Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNL-LLSITRLLEN 834
                 G  +H L+Q +    +  +++      T +   +    + K + +  I    E+
Sbjct: 530 LSATEIGTAMHTLMQAVSLDYKPTKEDLEQLLHTMREKDILTDVQIKAINIKQILDFFES 589

Query: 835 PMMTTAMSCDSY--SEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYK 884
           P+  T +        EV  S  +            + ++I G +D +   ++ I + +YK
Sbjct: 590 PLGETMLQKKDLVKREVPFSYLLPVSELYEKVDLDERVLIQGVVDSMIEEEETITLIDYK 649

Query: 885 THHHVP------QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
           T              + +   +  Q+ +Y + ++     K     L +     +
Sbjct: 650 TDKIEGRYADWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFDGQHI 703


>gi|302878356|ref|YP_003846920.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302581145|gb|ADL55156.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 666

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 94/592 (15%), Positives = 184/592 (31%), Gaps = 120/592 (20%)

Query: 97  KEKLKKSQDEFIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           K++++  Q +    +  F      +  +  A       +   Y+E  +    +DF+DLI 
Sbjct: 128 KQEIRDIQTQISNWKSAFVAPEQAVVVADSADAEAYARIYMRYQETLRAYQAVDFDDLIH 187

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               L K    +     +   ++ ++LIDE QDT+  Q+++ R L            +  
Sbjct: 188 LPVLLFKDHPEA---LLRWQHKLRYLLIDEYQDTNDCQYQLTRLLAG----------TRA 234

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ Q+IY++ GA  + +   +    +          +I+L  ++RS+  IL V 
Sbjct: 235 AFTAVGDDDQAIYAWRGASIENLHNLRTDYSQ--------LRVIKLEQNYRSSQRILKVA 286

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + + +           S   I                                   +  D
Sbjct: 287 NALINHNTKVFEKKLWSDHGI----------------------------GDPIRVYAARD 318

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                      A  +            + ++  +   +  D  +L R    +       R
Sbjct: 319 -------DEHEAESVVMK---------LVTHKFENQAKFSDYAILYRSNYLSRAFEEQLR 362

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 ++    +      D   IKD+ A  R I + +DD +F+  + +P        + 
Sbjct: 363 A----QRVPYTVSGGTSFFDKPEIKDITAYLRLIANPDDDPAFIRAITTPKRGIGNATLE 418

Query: 455 KICTQRH-ETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           K+ +       +++E                       ++I+ L   A+     +    +
Sbjct: 419 KLGSHAGLRHISLFEAAFDVQIEQLLPPRQYEDLMVFCRFINRLEDRAESDPCGELLDEL 478

Query: 508 LGAKKGRQQFI----SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           L A            +R        +++F+ +  R  +    SL  ++  +        +
Sbjct: 479 LRAINYETWLYDSSDARQAESKWKNVEDFIGWLKRKSEADEKSLIAMVQTIALINMLEGK 538

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                   V + T+H AKGLE P VF++     +   +                      
Sbjct: 539 DKEQE--AVSLSTLHAAKGLEFPHVFIIGAEEDILPFRDS-------------------- 576

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                EE  RL+YVG+TRA   L I         K 
Sbjct: 577 ----------------DAKGIEEERRLMYVGVTRAERTLQISYCKRRRRGKD 612


>gi|24375807|ref|NP_719850.1| ATP-dependent DNA helicase Rep [Shewanella oneidensis MR-1]
 gi|24350759|gb|AAN57294.1|AE015866_1 ATP-dependent DNA helicase Rep [Shewanella oneidensis MR-1]
          Length = 671

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 104/648 (16%), Positives = 209/648 (32%), Gaps = 123/648 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K +  +E+ +    LK       +    +       K+ K       L   L   Y +  
Sbjct: 118 KELTQKELQEDKDLLKALAGAISNWKGGLIIPDQARKLAKDEQQ--QLFALLYQRYAQHM 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    LDF+DLI+    LL+  +    +R +   +I ++L+DE QDT+  Q+E+++ L  
Sbjct: 176 KAYNALDFDDLILLPTLLLRHHEE---VRTRWQTKIQYLLVDEYQDTNTSQYEMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA+P+ ++   +   K          +I+L 
Sbjct: 233 E----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPK--------LKLIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +    S  S           G+   V             
Sbjct: 275 QNYRSSQRILRAANILIANNPHVYDKSLFSE-------LAYGEPMRVLF----------- 316

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                             ++    A R+   I           +      Q  D  +L R
Sbjct: 317 -----------------AANEEQEAERVVAEIVR---------HKFVGRTQFGDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+           +I    +          IKD+M   + +++ +DD +F+ ++
Sbjct: 351 GNHQSRLLERAL----MTNRIPYKLSGGTSFFSRAEIKDIMGYLKLVVNPDDDNAFLRVV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHI 494
             P        + ++      +  +++E               +S      ++I +    
Sbjct: 407 NLPKRGIGPSTLERLGNFANEKHISMFEAIFAPELNHHLPPNAMSALYQFGRFIVDTGEH 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLRN----EQNSYS 545
           A    P +    ++               ++     +  + E   +        E     
Sbjct: 467 ADRGEPVEAVKQLIRKINYEDYLYETSTSAKAAEMRMKNISELYRWVTEMLSGDELEEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L E+++ L       + +     ++V++MT+H +KGLE P VF+V    ++  H+    
Sbjct: 527 TLPEVVNRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPFVFMVGVEERILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              +   +E  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVDEERRLAYVGITRAQRELWFT 611

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                  +     R            D+ V + +      ++      
Sbjct: 612 -LCRERRQFGETMRCEPSRFLHELPQDDLVWENRKPQQTEQERMQTGR 658


>gi|182677780|ref|YP_001831926.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633663|gb|ACB94437.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 800

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 107/661 (16%), Positives = 199/661 (30%), Gaps = 116/661 (17%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L AHY+E  K     DF DL++ +  LL+       +         ++L+DE QDT+ 
Sbjct: 209 ADLYAHYQERLKTLNAADFGDLLLESLRLLRDNPD---VLRLYQDRFRYMLVDEYQDTNS 265

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+  +R L +              +  VGD+ QSIY + GA+   +LR +         
Sbjct: 266 VQYLWLRLLAQ----------GRHNVCCVGDDDQSIYGWRGADVDNILRFETDFP----- 310

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +II L  ++RST  IL    ++ +  +   G +  +      + +  G   + + 
Sbjct: 311 ---GATIIRLERNYRSTGHILGTAARLIAHNDGRLGKTLFTDDAPGLKPAVTGVWDSEE- 366

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                              AR I   I  +              
Sbjct: 367 ----------------------------------EARSIGEEIEQLQRQGEGLD------ 386

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +I +LVR              L     +           +   I+D +A  R +  
Sbjct: 387 ----EIAILVRASFQMREFEERFITL----GLPYRVIGGPRFYERAEIRDALAYLRCVAQ 438

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             DDL+F  +   P     +  +  +    R E   + +        ++         + 
Sbjct: 439 PADDLAFERIFNVPKRGLGDATLQLLYDAARRERIPLMQMAAIMVETEELKPKQRQTLRS 498

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +++  +    + +     +   +IL        +      E    L+         E+  
Sbjct: 499 LLEDFNRWRSLIEAKPQGELAEMILEESGYTDMWQKDRTAEAAGRLENLKELVRSMEE-- 556

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                +L S LE     +   + A    V IMT+H AKGLE   VFL      +F H+  
Sbjct: 557 ---FPDLGSFLEHISLVMDAENQAGGPRVSIMTLHAAKGLEFETVFLPGWEEGLFPHQRS 613

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                ++  EE  RL YVG+TRA  +L 
Sbjct: 614 LD--------------------------------ESGRAGLEEERRLAYVGITRAKRRLH 641

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE--N 721
           +   +N               + +    +  V++     +        +     +    +
Sbjct: 642 LYFATNRRIHGLWQTTIPSRFLDELPAENVEVREAASGTAYGGYAQSRFANMDSYGSSYS 701

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
           TP  +     Q   ++    +     +    +     P  I+ +      +  S  Q   
Sbjct: 702 TPGWQRAQRHQESKQRGSSGQTGGGQEAFKQKNARRGPLQIEGELVAKSSAGSSFAQGAR 761

Query: 782 R 782
            
Sbjct: 762 V 762


>gi|28868005|ref|NP_790624.1| exodeoxyribonuclease V subunit beta [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|28851241|gb|AAO54319.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato
            str. DC3000]
          Length = 1230

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 122/1004 (12%), Positives = 273/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +  +  E          LT     +        +            +  +    
Sbjct: 272  EKLAAWAADETQEALDLGTGFTRLTPDGVAEAWKSDPPSHPAF--------AAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDGLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDGAL-HGAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEGNDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVESVNHVFTRAEQRPEGKGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA R A
Sbjct: 485  FLFRDEEGNQVPFSDALAQGRKETLEVDGAALTALTVWHLESEQPVSGVVYRQQLASRCA 544

Query: 351  YTISNMIGTDTIFSNGK------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++        G       +R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFTAPGNAQRGLRPADIAILVRDGKEAQAVRSQLTA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWEQRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +            +++        LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADG----------RAQISLQPTEALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      ++       +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNANSSMLHRSALGYLLGGGTALPESADL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN--- 749
                +D           P   P +   +  +             +       +       
Sbjct: 877  KVWLRDLAEGCSAIALQPVPEPTDDSFSAPRNEASLVKLLVPKRRAAENWWIASYSALRI 936

Query: 750  -----DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILVSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  IFTL-------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                          + ++ +   C +          ++ L  +  + L          + 
Sbjct: 997  AGNEGFANTAHDSVQLQDAVARRCNRRGWAGWINTLRDWLQHMLNMPLRLSPDSTPVALG 1056

Query: 839  TAMSCDSYS-EVSV---------------SGKINCPKKDI----------IISGRIDQIS 872
                 + Y  E+                   +                  +  G ID   
Sbjct: 1057 DLNQPNQYRVEMEFWFASTNVNVAQMDTLVRRFTHDNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +  +         +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGSDDDAYTDLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F  P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSASQGAYFTRPPRELIESLDLLFQGKP 1220


>gi|332169838|gb|AEE19093.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1046

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 130/857 (15%), Positives = 282/857 (32%), Gaps = 131/857 (15%)

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL- 147
            I       ++    +  +  ++  + N  + F+S +  L++   +    E  K+   VL 
Sbjct: 298  IKATIDGHRDHFIATFLKLKELASKQNMLESFRSKIIPLSVLHLIKKELELIKEDENVLL 357

Query: 148  --DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
              DF  LI  +         +A++  ++ +   +  IDE QDTS++QW+ +  L ++   
Sbjct: 358  ISDFNALIAQSLK----DQPAAFLYERLGERYTNYFIDEFQDTSVMQWDNLIPLIDNTIS 413

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
             +   +   +L  VGD KQ+IY + G E ++ +        +        +I  L  ++R
Sbjct: 414  SQAEDTVANSLLLVGDPKQAIYRWRGGEAEQFIAL----SNQINPFSTPATIDRLETNYR 469

Query: 266  STADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            S+A+I+   ++ F+   N     L  +       + +     G V L             
Sbjct: 470  SSAEIIDFNNQFFTHLSNHFNNELYREIYYKDNSQQTNSNTGGFVSL------------- 516

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                    + +   +E +  I   RI   I+       +            DI +L R  
Sbjct: 517  -------EFLEYDNKEEANEIYPARIIEIINEATSQGYLH----------SDICILTRNN 559

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             D  LI    +       + VV ++  ++++   ++ + A    +       + + +L  
Sbjct: 560  IDGSLIATALQE----ANVEVVSSESLLISNSSTVQFIHAFATMLSYPSQIENRLPVLYF 615

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL-----IHIAQFC 498
                F+ +D                    ++      F   I+++        I   Q  
Sbjct: 616  LTTYFNVED----------------THSFYSINTSCTFLEFIEHLQRFDVFVHIDYMQTL 659

Query: 499  SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
              +++   I+ +                  +  +L+      Q+    +   I   E+  
Sbjct: 660  PLYEYLESIIRSFN--------LTAISDAYVVAYLDLAYSYSQSKSGGILGFIDYWEEKK 711

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                       + V+ MT+H +KGLE P+V      S ++  +   + + +  L      
Sbjct: 712  EKSSIVAPEQDSAVQTMTIHKSKGLEFPIVIYPYASSDLYRVRGEHQWYPIDDLAFGGFK 771

Query: 619  PIWIPQSKSRNNIVSD---LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
             + +P + +  +       L +      Q +   +LYV +TRA+++L +      S EK 
Sbjct: 772  TLMVPHNSALKDFGEAGKMLYETRNNEQQFDTINVLYVALTRAAERLYVLSRFRESKEKV 831

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
            +                     + +      + W   + +    + TP ++E+      D
Sbjct: 832  NTYS-----------------DLFIDYLKTNNLWNEDQHTYTFGKETPAKKED---NKTD 871

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                     S  K ++          I    +               G +IH+L+  I +
Sbjct: 872  YNSFVPSFISTSKEEL---------GIQIITQATFLWDEQKQNAITYGNLIHELMAQINS 922

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-PMMTTAMSCDSYSEVSVSGK 854
                   +          +    +E    + ++ R + +   +         + V     
Sbjct: 923  YT-----DVQHVLENAVKQGIVPEEGYETINNVLRSITSNQRLADYYQDQ--NTVYNERM 975

Query: 855  INCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            I        I    D++ +       I +YKT  H P         H  Q+S+Y K+ ++
Sbjct: 976  ILSSDGSFYI---PDRVVVLPNGDTTIIDYKTGMHNPS--------HSKQISMYAKLYEE 1024

Query: 914  SYPNKSL-VCLLIYVSE 929
                  +    L+Y+  
Sbjct: 1025 M--GFKVANKFLVYIDA 1039


>gi|303326806|ref|ZP_07357248.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
            3_1_syn3]
 gi|302862794|gb|EFL85726.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
            3_1_syn3]
          Length = 1081

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 146/944 (15%), Positives = 308/944 (32%), Gaps = 96/944 (10%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI--EERFSLLSSFF 73
            +  D+    +  ++          E     +    + L  A        +     +    
Sbjct: 197  LLDDVLLGRFEDLTPEAVLKEKLQEMDEAAVQAARELLASAQAAGLRWKKPALGAVEQLS 256

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK--------STLA 125
              Q         ++E  ++       + ++  +   +       +  +            
Sbjct: 257  WGQVEKCSSAFASKETAEELFLKNTVVPEATAQAFAVYSAHARRRAGEGSLIVQALRIAP 316

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLII--NTNDLLKKRDVSAWIRYKIDQEINHILID 183
             + LA+ L A + + +++   L    L++     ++L+          ++   + + L+D
Sbjct: 317  FVRLAQALVAAFLQNQEQEGAL--PGLLVPRLAREVLEGERGVPEALCRLGTRLTYFLVD 374

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS  QW+ +R L E+            +L  VGD KQSIY + G EP+        
Sbjct: 375  EFQDTSREQWQALRPLLEEALS------RGGSLTWVGDVKQSIYGWRGGEPELFDAVFDD 428

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              +  T          LP ++RS  +++   +++F+  ENA          +   +    
Sbjct: 429  --QGLTRLAPGGERRNLPRNWRSRREVVEHNNRIFAPLENAATAQRVLAALLPGDTPPEV 486

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 +   +  +    QC P+            Q ++   L   +   + +++  +   
Sbjct: 487  LTTATRRLSRAFAGAAQQCPPKAREGGLVRAEEIQGATQDDLRDCVLERLCDLLRDEIGP 546

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                       D+LVLVR  +   +             I V+  +  +L +H  I   +A
Sbjct: 547  RR------LWSDVLVLVRGNETARVTAEGL----VHEGIPVITENSLLLAEHPLIVQTVA 596

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            L  F+ + +DD++F  ML   +         ++  +             F      ++  
Sbjct: 597  LLAFLDNPDDDIAFWTMLTGSIV-LEHPQAAELDWEILHGWCAEPGQGPFHLRFRRRWPL 655

Query: 484  VIK-YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            + +  +      +   +P+D             +F      E    L  F+      E+ 
Sbjct: 656  IWRNLLAPFHSQSGLMTPYDTVLEWFTRLDVEARF-----PEARTFLRRFMEVLHSAEEK 710

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              ++L   +   +      K     N N VR+MT+H +KGLE+PVV L  T   V     
Sbjct: 711  GLATLSTFLEHWQDKSGEEKVPMPENMNAVRVMTIHKSKGLEAPVVILPWTSFNVRPSGR 770

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                   P L +  G+ + +P        + ++          E   LLYV  TRA D+L
Sbjct: 771  -------PVLLERDGLRMAVPNR----KALGEIYYEDLARQACENLDLLYVAFTRARDEL 819

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
             I      +    +   +    +   +   E          +      A +         
Sbjct: 820  HI--FRTGTPGLDNKSGSLCAALDILWQEAELRLPYSRGTPVECPRNGATDDEIC----- 872

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
                 E +   + E  +P++ + P++         NP                  +  +R
Sbjct: 873  ----PEPLAAPLTEAAVPEQKWRPMQWLPRLKIFRNP------------LGGFAFKAEDR 916

Query: 783  GLIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLW---PAKEYKNLLLSITRLLENPMMT 838
            G ++H  L+ +  T    +      S+  +N  L          +L  ++      P   
Sbjct: 917  GSLLHFCLEHLRVTGQAEEDARAALSFGLRNYPLPVPDDPALRDSLARALAWFASQPEAG 976

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
                   + E S+       ++  ++  R+D +        + +YK+          +  
Sbjct: 977  RWFEQG-WPEQSLM-----DEQGHVL--RMDLLVRESWGPLVIDYKSGR--------LEA 1020

Query: 899  THIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKL 940
             HI+Q+  Y   L+ S  Y   +   LL+Y+ + +  ++   ++
Sbjct: 1021 EHISQVRRYLSCLEQSGDYGG-TARGLLVYLDQRRFQLVEATRV 1063


>gi|302346508|ref|YP_003814806.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
 gi|302150979|gb|ADK97240.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
          Length = 1100

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 136/886 (15%), Positives = 276/886 (31%), Gaps = 87/886 (9%)

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
                 ++ L +    +K  I+  I++   D  + L   Q      ++  ++    K    
Sbjct: 280  LDSPDNWLLKKCPAGEKERISTLISESWYD--DLLLLEQYRKECWKEYQSSNLTLKHLSQ 337

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILI 182
               L   ++   +E  K         ++ NT  LL    K   + ++  K+   + HI+I
Sbjct: 338  L-RLLHAISEAVDEINKDTNRF----MLSNTQSLLSTLMKDTDTPFVFEKMGAYLKHIMI 392

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDTS IQW   R L ++      +H+       VGD KQSIY +   + K +   + 
Sbjct: 393  DEFQDTSTIQWTNFRKLLDNCMAQIESHN-----LIVGDVKQSIYRWRQGDWKLLNNIEH 447

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                      ++  I  L  ++RS  +I+   +  F+          +S           
Sbjct: 448  DFS------EEQIKIEPLETNYRSEENIIRFNNAFFTQAVIQTVKELESDDI-------K 494

Query: 303  GQVGTVQLWEQVVSQH-DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            G    ++ ++++  +                +D          +   +   I  ++    
Sbjct: 495  GASQLIEAYKEIEQKPRKDDGKGSVHIKLFPYDKKAVSEYNENVLNELINNIRELLK--- 551

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                   R  + KDI +LVR +     I    +       +S+V ++ F L   LA+  +
Sbjct: 552  -------RGYKQKDIAILVRSKGVIQDIADKFQGEF-GTDVSIVSDEAFQLDASLAVNVI 603

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            +A  R +   +D L+   ++K               T R       +  +K     +   
Sbjct: 604  IAALRLLTHPDDKLTESKLVK-------LYQQQVKQTDRDNNALFVDEGEKELKSFLPS- 655

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
               +     L+      S  D    I          +     +    +  F +      +
Sbjct: 656  -GYVDKFDFLLR----SSLVDLVDEIYSLFN-----LGSLEGQS-AYVCTFYDTLNEYLR 704

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            +  + + + I E E    +         + +R++T+H +KGLE   V +      +    
Sbjct: 705  DHPADIDDFIEEWEDSLSSNTIQSDEV-DGIRLITIHKSKGLEYDNVLIPFCDWGLEKTV 763

Query: 602  HIKKMHIMP---SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                            D  +       K    +  D  K        +   LLYV  TRA
Sbjct: 764  GNTIWCPGDNKEKPYGDLPLIPIDFSKKMIGTVFEDDYKEEHLQNTVDNMNLLYVAFTRA 823

Query: 659  SDQLIICKHSNTSN-----EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
               L I     +       +  +       ++     +          +     E I+++
Sbjct: 824  GKNLFITGKKASKTTFTKLQNGNTATDRSQIIQLVIDDLANELPEAKVDDAGDKEAISFD 883

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-S 772
            + T       +++E++ +   +      KL          P     S          +  
Sbjct: 884  FGTLLDCEQRVDKEKSTENPFELTPKTHKLK---IETFPHPVSFRQSNKSHDFINGEDID 940

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                N+    G I+H+L   I  L E   +  +     +          + L   I   L
Sbjct: 941  PSDANRYIKVGNILHQLFSTI--LTEDDIEPRLKELEQEGVIYNDEVTSRELQNKIANAL 998

Query: 833  ENPMMTTAMSCDSYSEVSVSGK-INCPKKDIIIS-GRIDQISISQQNIFIFEYKTHHHVP 890
             N  +    S  S  ++      ++  K+   I   R D++    + I + ++K      
Sbjct: 999  MNEKVKDWFS--SRWKLFNECTILDYDKESGDIHEHRPDRVMTDGKEIIVVDFKFGKP-- 1054

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
                     +  Q+  Y  +L      + +   + YV   ++   P
Sbjct: 1055 ------REEYHEQVQRYMSLLMRM-GYEKVSGYIWYVVRNEIVPTP 1093


>gi|76809077|ref|YP_331538.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b]
 gi|76578530|gb|ABA48005.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b]
          Length = 733

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/578 (16%), Positives = 181/578 (31%), Gaps = 130/578 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R +    + ++LIDE QDT+
Sbjct: 213 AALVYRNYVATLHAYQAVDFDDLIRLPTELFARNE---PVRDRWQNRLRYLLIDEYQDTN 269

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 270 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 316

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 317 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 362

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 363 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 387

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 388 RTQFRDYAILYRGNFQARVFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 443

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   +   +
Sbjct: 444 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 503

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL----- 533
               +I  L   A          D    I         +  R        + EFL     
Sbjct: 504 IFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKR 563

Query: 534 -------NFTLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVH 578
                     +  E   + +   L          ++             + + VR+ TVH
Sbjct: 564 KGTKPEAEQAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVH 623

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H        +                             
Sbjct: 624 ASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDD--------------------------- 656

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                 EE  RL+YV +TRA   L +         +++
Sbjct: 657 ---ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 691


>gi|94500333|ref|ZP_01306866.1| exodeoxyribonuclease V beta chain [Oceanobacter sp. RED65]
 gi|94427632|gb|EAT12609.1| exodeoxyribonuclease V beta chain [Oceanobacter sp. RED65]
          Length = 1184

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 131/1006 (13%), Positives = 302/1006 (30%), Gaps = 166/1006 (16%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
            E  + +        +Q             +  +      +  K  +T++      ++   
Sbjct: 244  EYASKSFTNHLSRRKQHLDDFTSGAYVKDIEKYIGYFTESGIKKSVTKKGEPTDHEMILS 303

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
              K     ++ +++     +       +   + +    +E K+   VL  +DL+      
Sbjct: 304  FTKMHAALLQWQEQKQQATLLWK----IRFTEAIRTRLDELKQAQSVLCADDLLKQVLRS 359

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            L   +    +   + Q+    ++DE QDT   Q+ V   L  +              F +
Sbjct: 360  LGSSESLCTL---LCQQFPMAMVDEFQDTDSTQYRVFSKLYSETPEETG-------FFMI 409

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD KQ+IY F GA+    ++ K   ++  +          L  ++RS+  +++ V+ +F 
Sbjct: 410  GDPKQAIYKFRGADVFTYIQAKTEVEREFS----------LQDNYRSSPSLVSAVNALF- 458

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
               +   + +DS       ++   Q         + S+         +++    DS  ++
Sbjct: 459  QCHDRPFIFDDSIPFYPVGAASKSQ--------LIQSRDIDNSACVFQTFDIDSDSGIED 510

Query: 340  SSASILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
               + +A  +A  +S ++ +                R I ++DI +LVR      L+   
Sbjct: 511  I-RTEVAHGVAEQVSVLLSSGLEQSTKVFDSDLDDYRDISSRDIAILVRSAHQARLVKQA 569

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                     ++ V   +  L +      +  L   + S   + S+   L +P++  S D 
Sbjct: 570  LDE----RGVAAVFKGQESLYNSAEALAVYELLNSLHSLS-EQSYRNALANPVWMLSLDQ 624

Query: 453  IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
            +              E   +     + + + +      +  +  +               
Sbjct: 625  LATHLQH--------EVCWEEELELMYECKRIWIKQGIMPMLMHWLHSRGLPQQWFALTD 676

Query: 513  GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--YPPTIKRAHSANHN 570
            G ++  +         + E L       Q     L     +L+        +    ++ N
Sbjct: 677  GERRITNYL------HMAELLQEQASRLQGMQGLLTWFEHKLQNTYQSEEAQLRLESDEN 730

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
             V I+TVH++KGLE PVVFL                           I           +
Sbjct: 731  LVSIVTVHSSKGLEYPVVFLPYA---------------WSMSKQVDVIYFDEITQSLCCD 775

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
            +         K    E  RLLYVG+TRAS QL +   ++  N+K ++      + +    
Sbjct: 776  LEDVHKDVRLKEQLAEEVRLLYVGVTRASSQLYVTVPTHCDNKKINSTLLASPLFHVLCG 835

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
            ++E   +    + +        + S        +   E       + +   +        
Sbjct: 836  SNENKVEAAPADQLANAISTLEKKSEQGVFAQQVLPYELTSFKAPDPEGDWQTTQFEGKI 895

Query: 751  INEPYILNPSTI------------------------DTKGKTNLESLLSDNQTFNRGLII 786
                ++ + S++                        +     ++ +  +  +  + G  +
Sbjct: 896  KQPWFMSSFSSLVRGLHVPHHQRFNFDEIDDDLIIPEVPLDKDILNPFTFPKGAHAGNFL 955

Query: 787  HKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--------- 836
            H L + I    P   + + +     +    +  K  + +L    ++L  P+         
Sbjct: 956  HNLFEDIDFTRPMIDQVSTVQELLMRYG--FEEKWLETVLEWSQKILHAPLQDQTLDKPI 1013

Query: 837  -MTTAMSCDSYSEVSV---------------------------SGKINCPKKDIIISGRI 868
             ++         E+                                ++      ++ G I
Sbjct: 1014 SLSDLQPDQKSVEMEFYFPVNGLSCSKFNALLRKYPVLGTVQQVQDLDFDFLQGMLKGFI 1073

Query: 869  DQISISQQNIFIFEYKTH---------HHVPQEIEHIPYTHIAQLSIYEKILKDS----- 914
            D     Q   ++ +YK++         H          + +  QL +Y   L        
Sbjct: 1074 DLTFECQGRYYVLDYKSNFLGDELTHYHRNAMTQAMAEHRYDVQLVLYTLALHRLLKLTL 1133

Query: 915  ----YPNKSLVCLLIYVSE-------PKVFIIPQNKLNKAFAEIST 949
                Y         +++          + +  P   L +A   + +
Sbjct: 1134 PNYNYDEHMGGGFYLFLRGISGESQYGQFYHKPNRLLIEALDAMIS 1179


>gi|330941325|gb|EGH44183.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 650

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/646 (15%), Positives = 210/646 (32%), Gaps = 125/646 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+        +DF
Sbjct: 110 DDGVDEIKNMIGSWKNDLILPAEALENARNPKE-----QTAAIVYTHYQRTLNAYNAVDF 164

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 165 DDLILLPVKLFQEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG-------- 213

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 214 --TRHQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSR 263

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +A                        QLW ++    +          
Sbjct: 264 ILRCANVLISNNPHAFEK---------------------QLWSEMGHGDEI--------- 293

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 294 -----RVIRCRNEDAEAERVAMEILTLH---------LRTDRPYSDFAILYRGNYQAKLI 339

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +F+ ++  P     
Sbjct: 340 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIG 395

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    + Q   +++  +        P  
Sbjct: 396 STTLEKLGNYATERKVSMYAATDEIGLGEHLDSRFTDRLQRFKRWMDGVRQQCAQNDPIA 455

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              +E      +  +   +      L  ++    +++E I +L
Sbjct: 456 ALRSMVMDIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKL 515

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  ++    +    V++MT+H +KGLE P VF++    ++  H             
Sbjct: 516 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 562

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 563 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 600

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +         + +   +D   +    T +  K        +    
Sbjct: 601 GEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 646


>gi|154494054|ref|ZP_02033374.1| hypothetical protein PARMER_03399 [Parabacteroides merdae ATCC 43184]
 gi|154086314|gb|EDN85359.1| hypothetical protein PARMER_03399 [Parabacteroides merdae ATCC 43184]
          Length = 1075

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 140/910 (15%), Positives = 278/910 (30%), Gaps = 102/910 (11%)

Query: 42   GNPTILKKAQTLQQASQTQCIEE---RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
            G+ + L     L Q    +           L   F        + II         D  +
Sbjct: 250  GSRSPLTLLDRLVQGEMKEPSATFIGLADNLDGCFTKTVSLGTRQIIGCAFEDGLNDCIK 309

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
             +                 + + +      +++ + A Y E K    V+    LI +T +
Sbjct: 310  GIISLFGNLTAYNTAREIVRYYYTLGILTDVSRQI-AAYREEK---NVM----LIADTTE 361

Query: 159  LLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            LL    +   + +I  K    ++H +IDE QDTS +QW   R L E+           R 
Sbjct: 362  LLSKVIEGSDAPFIYEKTGTHVDHYMIDEFQDTSGMQWNNFRPLIEESLAH------SRD 415

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
               VGD KQSIY F  ++ K +       Q +A  + +      L  ++RS  +I+   +
Sbjct: 416  NLIVGDVKQSIYRFRNSDWKLLDE-----QVQADFSPEVVHEETLKDNWRSCRNIVEFNN 470

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +F+          +   ++   S         ++             P  +        
Sbjct: 471  ALFTTLPGVLQAVYNEALSVSSLSEEQRAAFFTKIMSAYDKSFQQVPPPFMQKDGHVRIE 530

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                 +              +     +    +      KDI +LVR  ++   +      
Sbjct: 531  FLSGDNEKDWKE------EALGRLPGVLEKLQDNGYALKDIAILVRTNQEGAQVADTLLA 584

Query: 396  LK-----NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             K     N Y   ++ ++   ++   A++ +++L R++ + ED  +    L S       
Sbjct: 585  YKEEHPSNRYNYDIISDEALFVSGSTAVRFMVSLLRYLKNPEDRTNEQIALYSY------ 638

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                         + +             +   V++ +                  +   
Sbjct: 639  -------------QVLKGRFGVETPAFPPEVVSVLQILSR--------------QSLYEI 671

Query: 511  KKGRQQFISRFGNEVIDV-LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
             +G  +  +    E   V +  FL+      Q   + L   +   ++       A     
Sbjct: 672  TEGLFRLFADDFPENEQVFVQAFLDMVSEYTQKESADLNRFLKWWDETGCRKTIATPDRQ 731

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            N +RI+TVH +KGL   VV +     ++        +               +P    ++
Sbjct: 732  NAIRILTVHKSKGLGFKVVIIPFGDWEIDHKPTKPVILWCHPEEKPFDRLHLVPVRYGQS 791

Query: 630  ---NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-RTWYDMV 685
                I +      +     +    LYV  TR+ D+LI+        +  + +      + 
Sbjct: 792  LGKTIFAGDYFKERLHAFIDNLNTLYVAFTRSKDELIVFSPRPKKMKDATGEVEKISTLT 851

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
               +                     A++  T   E          ++  D Q+I     S
Sbjct: 852  DALWAGLRTDMPDTREGEKLILLPAAFDTGTGVFELGDWWHPVAKEENGDIQEIGMARLS 911

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
             I  D      L+            +    DN     G ++H++L  I           +
Sbjct: 912  SISPDDRLQLRLH-----------GKGYFFDNARRKHGALMHEVLSRI--RTRKDIPQSV 958

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
              Y      +   +E   L+  +  LL  P   +     +   V     I   K    +S
Sbjct: 959  ERY--HQEGVIDKEEAIALVARLEELLNLPEAASWYDGTAR--VLNEVDILFGKG---LS 1011

Query: 866  GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
             R D++ I+   + + +YK         EH    + +Q+  Y K+++    +  +   L 
Sbjct: 1012 KRPDRVMITGNRVVVVDYKFG-------EHADQRYHSQVRNYLKLIRQMGYD-EVEGFLW 1063

Query: 926  YVSEPKVFII 935
            YV   K+  +
Sbjct: 1064 YVELNKIEAV 1073


>gi|331703738|ref|YP_004400425.1| ATP dependent DNA helicase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802293|emb|CBW54447.1| ATP dependent DNA helicase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 722

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 111/602 (18%), Positives = 202/602 (33%), Gaps = 128/602 (21%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K    ++I  K  + KE+L    +         N    +    A       +   Y
Sbjct: 135 SENDKKTFDKKILYKIKEWKEELVDPDEAI------LNANSTYDRNSAI------IYKLY 182

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           +E   KN  +DF+DL I    L K       I  K     +++L+DE QDT+ IQ+ +I+
Sbjct: 183 QETLLKNNSIDFDDLQIYVYLLFKNH---QEILNKWRNAYDYVLVDEFQDTNDIQFSLIK 239

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            LT           +   L  VGD  Q+IYS+ GA+   +L   +      +        
Sbjct: 240 FLT----------INTNHLTVVGDPDQTIYSWRGAKLDIILNFNKTYNNAIS-------- 281

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  ++RST  IL + +      +  +     +      +                   
Sbjct: 282 IVLNQNYRSTKQILDISNSFIKNNKFREHKEIFTNNKSGKKVI----------------- 324

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                             L + +S +  A  +++ I  +I                KDI 
Sbjct: 325 ------------------LKECNSKTSEASYVSFKIKELIKQG----------YHYKDIF 356

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +L R    +            + KI           +   IKD MA  + I S +D+LS 
Sbjct: 357 ILYRMNAWSQEFEKEL----INKKIPFQLIGGIKFRERKVIKDAMAFLKMI-SIKDNLSS 411

Query: 438 VCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
             +L S +       I K I T      ++++ I       +      +  + E+   A 
Sbjct: 412 QRVL-SLIPKIGNITIEKIINTANLNHISIFDLITNEDKTLLHSITKNLDELIEVFKTAH 470

Query: 497 FC-----SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE-- 549
                  +  +    +L       +   +  ++ +D ++   +   R ++N  ++     
Sbjct: 471 QLYLDNTNIEEILKYLLIQSGYENKLKVKNEHDDLDNINALYDQLKRFDENFDANYYSED 530

Query: 550 --LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             LI+ L++   T     +   ++V ++TVH AKGLE+ +VF+      +F  +      
Sbjct: 531 NKLIAFLQEEALTSDIDEAQQIDKVSLLTVHAAKGLENKIVFITGLNQGIFPTR------ 584

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                       +    +   EE  R LYV +TRA ++L +   
Sbjct: 585 ----------------------------LSENNQKELEEERRALYVALTRAKEELFLTYV 616

Query: 668 SN 669
             
Sbjct: 617 KG 618


>gi|288802442|ref|ZP_06407881.1| putative UvrD/REP helicase domain protein [Prevotella melaninogenica
            D18]
 gi|288334970|gb|EFC73406.1| putative UvrD/REP helicase domain protein [Prevotella melaninogenica
            D18]
          Length = 1099

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 128/858 (14%), Positives = 268/858 (31%), Gaps = 84/858 (9%)

Query: 94   PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
                + L   +    +    + +  +    L+ L L   ++   +E  K         ++
Sbjct: 304  ESWYDDLLLLEQYRKECWKEYQSSNLTLKHLSQLRLLHAISEAVDEINKDTNRF----ML 359

Query: 154  INTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
             NT  LL    K   + ++  K+   + HI+IDE QDTS IQW   R L ++      +H
Sbjct: 360  SNTQSLLSTLMKDTDTPFVFEKMGAYLKHIMIDEFQDTSTIQWTNFRKLLDNCMAQIESH 419

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
            +       VGD KQSIY +   + K +   +           ++  I  L  ++RS  +I
Sbjct: 420  N-----LIVGDVKQSIYRWRQGDWKLLNNIEHDFS------EEQIKIEPLETNYRSEENI 468

Query: 271  LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS-QCNPQQESW 329
            +   +  F+          +S           G    ++ ++++  +             
Sbjct: 469  IRFNNAFFTQAVIQTVKELESDDI-------KGASQLIEAYKEIEQKPRKYDGKGSVHIK 521

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               +D          +   +   I  ++              + KDI +LVR +     I
Sbjct: 522  LFPYDKKAVSEYNENVLNELVSNIRELLNRG----------YKQKDIAILVRSKGVIQDI 571

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                +       +S+V ++ F L   LA+  ++A  R +   +D L+   ++K       
Sbjct: 572  ADKFQGEF-GTDVSIVSDEAFQLDASLAVNVIIAALRLLTHPDDKLTESKLVK------- 623

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                  I T R       +  ++     +      +     L+         D    I  
Sbjct: 624  LYQQQVIQTNRDNNALFVDEGERELKSFLPS--GYVDKFDFLLR----SPLVDLVDEIYS 677

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
                    +     +    +  F +      ++  + + + I E E    +         
Sbjct: 678  LFN-----LGSLEGQS-AYVCTFYDTLNEYLRDHPADIDDFIEEWEDSLSSNTIQSDEV- 730

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP---SLNDDPGIPIWIPQSK 626
            + +R++T+H +KGLE   V +      +                    +  +       K
Sbjct: 731  DGIRLITIHKSKGLEYDNVLIPFCDWGLEKTVGNTIWCPGDNKEKPYGELPLIPIDFSKK 790

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN-----EKKSNQRTW 681
                +  D  K        +   LLYV  TRA   L I     + +     +  +     
Sbjct: 791  MIGTVFEDDYKEEHLQNTVDNMNLLYVAFTRAGKNLFITGKKASKSTFTKLQNGNTATDR 850

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              ++     +        +++     E I++++ T       +++E++ +   +      
Sbjct: 851  SQIIQLVIDDLANELPGAMSDDAGDKEAISFDFGTLLDCGQRIDKEKSTENPFELTPKTH 910

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLE-SLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
            KL          P     S          +      N+    G I+H+L   I  L E  
Sbjct: 911  KLKI---ETFPHPVSFRQSNKSHDFINGEDIDPSDANRYIKVGNILHQLFSTI--LTEDD 965

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK-INCPK 859
             +  +     +          + L   I   L N  +    S  S  ++      ++  K
Sbjct: 966  IEPRLKELEQEGVIYNDEVTSRELQNKIANALMNEKVKDWFS--SRWKLFNECTILDYDK 1023

Query: 860  KDIIIS-GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            +   I   R D++    + I + ++K               +  Q+  Y  +L      +
Sbjct: 1024 ESGDIQEHRPDRVMTDGKEIIVVDFKFGKP--------REEYHEQVQRYMTLLMRM-GYE 1074

Query: 919  SLVCLLIYVSEPKVFIIP 936
             +   + YV   ++   P
Sbjct: 1075 KVSGYIWYVVRNEIVPTP 1092


>gi|212702577|ref|ZP_03310705.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098]
 gi|212674018|gb|EEB34501.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098]
          Length = 1095

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 142/956 (14%), Positives = 312/956 (32%), Gaps = 80/956 (8%)

Query: 1    LKNRF-GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
            L+  F  ++  E  E  ++  W      V+D+ +    +    + T  K    LQ+  + 
Sbjct: 199  LRGEFTDIAGPEELEKRHRQHWHRTIALVTDVLEAEERAGTKLHATSRKALVRLQERDEG 258

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                       +F L     P+ +       K++ +L   L+           R    + 
Sbjct: 259  -----------AFKLKSIAEPEVDKFLTAKTKRTEELLSALEALTAWLPDFSRRHALLRS 307

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI-INTNDLLKKRDVSAWIRYKIDQEIN 178
             ++   ++ LA  L       +++   L    L+      +L      +    ++   + 
Sbjct: 308  ARNFAPAVQLATLLVHAMRANQQQEGTL-PAVLVPELAGSVLSGSFGVSEALCRLGSRLQ 366

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + L+DE QDTS  QW+ +  L E+            +L  VGD KQ+IY + G +     
Sbjct: 367  YFLLDEFQDTSREQWQALSPLVEEALS------RGGSLTWVGDVKQAIYGWRGGDAALFD 420

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +   ++ A +         L  ++RS   I+   + +FS  E+A    +     +   
Sbjct: 421  GIEAPLRRLAPD----VRHETLTANWRSCRQIIAHNNALFSPLEDASVARQALAALMPQE 476

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQ-QESWTSYFDSLPQESSASILARRIAYTISNMI 357
            +         +      +      +P          +++  ++S  + A  +   + +++
Sbjct: 477  TPDDLLDSYARRVAAGYAGTAQDFSPSSPSGGLVRVEAIDADNSEELNAA-VLGRLRHVL 535

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
              +             +D+LVLVR      L+            I +V  +  +L+ H  
Sbjct: 536  RQELAPRR------PWQDMLVLVRSNAQAALVAEDLAA----ADIPIVTENSLLLSTHPL 585

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            +   +AL +F+ + ED+L+   ++   L       +  +         V           
Sbjct: 586  VIQSVALLQFLCNAEDELALWTVVTGSLVQQGPLPVPDLQVL--HDSCVGRGSIPLVQHL 643

Query: 478  ISKFQHVI-KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
               F       +    + A   +P+D         +  +++      +    L  FL   
Sbjct: 644  QQGFPEFWTAVLAPFHNQAGLMTPYDTVMEWYDRLRVFERY-----PDADVFLRCFLEVL 698

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               E    ++L + ++  ++     K       + VRIMTVH +KGLE+PVV L  T + 
Sbjct: 699  KNAEDQGLATLPDFLAHWQEKGEEEKVPMPEGIDAVRIMTVHKSKGLEAPVVLLPWTDAS 758

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            + +          P L ++ G+ +          +  + +         E     YV  T
Sbjct: 759  LKASD--------PVLMEEDGLRMVCKNGPHCGRVYYEALL----RQAMELLNQFYVAFT 806

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA ++L++      ++     +    D +   +         +L    +    +    + 
Sbjct: 807  RAREELLVF----RTSAATVRKGCGSDALDVLWQQAGLDVPYQLEGGDDVLHPVQPPVAE 862

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
               E+T    E      + ++    +    +  +   P    P                 
Sbjct: 863  DEEEDTAPAPEAAEADTVPDRLSGGRAAPSVPEEDWRPMQWLP----RLKIYRNPLERMH 918

Query: 777  NQTFNRGLIIHKLLQVIF--TLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLSITRLL 832
                +RG ++H  L+ +    L E   +  +         A    A + +++   +   L
Sbjct: 919  FSARDRGTLLHACLEQLPLGGLSEDNIRAAVREVLATIPLADGQDAPDRESVTADMESCL 978

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
               +            V     +        +  R D I        + +YK+   +   
Sbjct: 979  LWLLRLPQFGLWQQRGVPEQSMLAADGPRREL-LRADLIVPLSWGTLVVDYKSGRVM--- 1034

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIPQNKLNKAFAEI 947
                   H+ Q+  Y + L+      ++   LLIY+ +    ++     ++ F ++
Sbjct: 1035 -----DEHVRQVQRYLRCLEQ--SGTAVARGLLIYLDKQSFRLVEPENASELFTDL 1083


>gi|254194688|ref|ZP_04901119.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13]
 gi|254298751|ref|ZP_04966202.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e]
 gi|157808603|gb|EDO85773.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e]
 gi|169651438|gb|EDS84131.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13]
          Length = 733

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 98/578 (16%), Positives = 181/578 (31%), Gaps = 130/578 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R +    + ++LIDE QDT+
Sbjct: 213 AALVYRNYVATLHAYQAVDFDDLIRLPTELFARNE---PVRDRWQNRLRYLLIDEYQDTN 269

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 270 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 316

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 317 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 362

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 363 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 387

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 388 RTQFRDYAILYRGNFQARVFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 443

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   +   +
Sbjct: 444 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 503

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL----- 533
               +I  L   A          D    I         +  R        + EFL     
Sbjct: 504 IFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKR 563

Query: 534 -------NFTLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVH 578
                     +  E   + +   L          ++             + + VR+ TVH
Sbjct: 564 KGTKPEAEQAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVH 623

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H        +                             
Sbjct: 624 ASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDD--------------------------- 656

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                 EE  RL+YV +TRA   L +         +++
Sbjct: 657 ---ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 691


>gi|153000571|ref|YP_001366252.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS185]
 gi|151365189|gb|ABS08189.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS185]
          Length = 1273

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 142/1030 (13%), Positives = 307/1030 (29%), Gaps = 171/1030 (16%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-----LKKAQTLQQAS 57
            +   LSL +S E             ++ ++         G  T            L    
Sbjct: 225  DALALSLRQSLERFKLAWPRGRDGLLALLHGLPLNGTRFGKATDKYPKLAAMFDALDNWL 284

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                       L +  L++    +  +I         D  E+L                 
Sbjct: 285  AFGHGLPPLKELEALSLSELKLNKGGVIPSVSEAPLMDHMEQLATLIAAIKPAF------ 338

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                      +    ++  + + K++  VL  +DL+      L     +  +   +    
Sbjct: 339  --------LYSAKLGISERFAQQKQQKNVLTPDDLLTTLASAL--HANNETLPKAVATRF 388

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFV----GKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
               LIDE QDT  +Q+ +   + +  +     G +T  +  +L  +GD KQ+IY+F GA+
Sbjct: 389  PVALIDEFQDTDPLQFAIFSGIYQGRYSFEQQGVDTTENKLSLLMIGDPKQAIYAFRGAD 448

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                +  +   Q              L  ++RS+A+++  V+ +FS   +          
Sbjct: 449  IHTYIEARHHTQAHY----------HLDTNYRSSANMVAGVNHLFSQHNDPFISQSIPFD 498

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
            +++  SS  G+              +      +    S  + L + ++  +LA   A  I
Sbjct: 499  SVKTPSSAKGK-------TLTEKTANPAALRLRLLSESAENGLNKTTARHLLAEDAAAEI 551

Query: 354  SNMIGTDTIFSNGKKR-VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            + ++           +  + AKDI +LVR R +  ++        +   I  V   R  +
Sbjct: 552  TRLLTDAANGECHSPKGALIAKDIAILVRDRNEAAVMKTAL----SKRHIGAVFLSRDSV 607

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
             D L  +++  + R + + +D+ +    L + L  +S + I          + + E    
Sbjct: 608  FDTLEAREMALILRSLANPKDERALRSALATALLGYSAEQIHAFNQDEEHRQLLLEQFFN 667

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                   +       +  L+ +A           +L +   +     +        L +F
Sbjct: 668  LHQVWQKR-----GIMPALLSLANSTK---LIDRLLHSASTQTDAQEQDATNGERRLTDF 719

Query: 533  LNFT--LRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLE 584
             +    L+ +      +  L++  EQ           +    +  N V+I+T+H +KGLE
Sbjct: 720  RHLAELLQQKATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGLE 779

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PV F+        + +    M    + +      +W  +            +  K+ T 
Sbjct: 780  YPVCFVPFVSLARDNRRRPTPMLYHRTNDAGEQELVWDIEGTDEG------WERAKQETL 833

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK----- 699
             E  RLLYV +TR      +   +++   K   +   ++            +        
Sbjct: 834  AEDLRLLYVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGIGDSECDFARICN 893

Query: 700  -LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK---------- 748
                     E I+ +      +  PL   + I Q++  + + ++  +P +          
Sbjct: 894  AAQQLAQDVEAISIDKVPDDIDERPLPLSQDIAQILSAKTLTRQYSTPWRVGSYSGLVKN 953

Query: 749  -----------------NDINEPYILN-PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                              +      L+ P     + +  + +  +  +  N G  +H +L
Sbjct: 954  TSHGKAAPGADDETLGTLEYMAAQTLSIPDEPSHELQDGMLNRFNFERGANAGSFMHLVL 1013

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-------------- 836
            + I    +  R   +             +    L      +L  P+              
Sbjct: 1014 EEI-DFTQADRDLPLQLPKAMLKYGIAPEWQTVLHTWYLDVLHAPLGLMPTTMSSTTVPT 1072

Query: 837  -----------------------MTTAMSCDSYSEVSV---------------------S 852
                                   +      D+  E+                        
Sbjct: 1073 TMPSTSAFENNSKTAKPEHPGLCLAKLSPQDTLVEMEFYLPLSELKDTELNALLQQFGYE 1132

Query: 853  GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQ 903
              +       ++ G ID     Q   +I +YK++H             +     + +  Q
Sbjct: 1133 STLKFDDLKGMLKGFIDLTFEYQGKYYIADYKSNHLGDNINAYHQSALQSAITDHRYDLQ 1192

Query: 904  LSIYEKILKD 913
              +Y   L  
Sbjct: 1193 YILYSLALHR 1202


>gi|313201054|ref|YP_004039712.1| uvrd/rep helicase [Methylovorus sp. MP688]
 gi|312440370|gb|ADQ84476.1| UvrD/REP helicase [Methylovorus sp. MP688]
          Length = 1141

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 119/920 (12%), Positives = 266/920 (28%), Gaps = 115/920 (12%)

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            +        T + + +K +         P+ K   ++  +    ++              
Sbjct: 286  WLAACELLFTGQDSWRKTVNVNTGFPAVPESKPYKEQLAELIAALQATAGADAALCRLRC 345

Query: 126  SLTLAK-----YLNAHYEEAK-----------KKNCVLDFEDLIINTNDLLKKR-DVSAW 168
               L        + +   +             ++   +DF ++     + L    D  + 
Sbjct: 346  LPQLRAGEESWQVVSALAQLLNLAVAQLWFVFQEAREVDFVEISQRALNALADDTDAPSD 405

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +  ++D  I H+L+DE QDTS  Q  +++ LT  +  G       RTLFAVGD  QSIY 
Sbjct: 406  LALRLDYRIQHLLVDEFQDTSPGQVHLLQRLTRGWEAGDG-----RTLFAVGDPMQSIYR 460

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F  A     L   R             + ++L  + RS   ++  ++  F+     +   
Sbjct: 461  FRKANVGLFLEVARE-----GIGDIHLTPLQLCRNNRSCPPVVDWINHAFAKVFPREDSI 515

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                             G ++    V ++ D                   E   +  A  
Sbjct: 516  AR---------------GAIRYRPFVATRADEVDTGVVMHPLIQGTDESNEQLRTREAAL 560

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +   I             +      + I VLVR R     +    R  ++   I     +
Sbjct: 561  MVKLIRE-----------EWAAHPQRRIAVLVRARSHLEHLVADIR--RHHRDIRFQAVE 607

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY- 467
               L     I+DL+AL   +  + D ++++ +L++P    +  D+  +    H +     
Sbjct: 608  IEALAGRQIIQDLLALTHALHHRADRVNWLAILRAPWCGLTLADMHVLAASDHRSTIWRL 667

Query: 468  ----EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                  +      G  +  HV   + E++          +         G          
Sbjct: 668  LQQDARLAAMTEDGRQRALHVRSILQEVLAQQGRLPVSRWLHSAWLMLGGPWCLWEPGDV 727

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            + +      ++      Q +   L E + +L            A    +++MT+H +KGL
Sbjct: 728  QDVQAFFALVDKLDNQGQFTPIRLAEEVEKLYAAADE------AADGRLQLMTIHKSKGL 781

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG----------IPIWIPQSKSRNNIVS 633
            E   V L     +  +      +    ++ D+                  +         
Sbjct: 782  EFDTVILPGLERKTGNQDSPLLLWEEVAIADEEQGSSVELVAAPFVPKGARLDDGLTPYD 841

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFHND 692
             L    K+  + E  R+LYV  TR   +L +   +  + + +    +   + +       
Sbjct: 842  YLRLLEKERAEHEDARVLYVAATRTERRLHLIATATVNAKGEPRPASGSFLQLLWPQVAL 901

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +  + +                +   P    L++ +    L                + +
Sbjct: 902  QFAEAMAAEGVSETSPQAEATLADFVPPLVRLQQPQMPAVLQTATPFTPLWN---PGEAS 958

Query: 753  EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--------F 804
            E   L  S                    + G + H+ L+++                   
Sbjct: 959  ESLSLAASLE-----------------ADIGTLAHRYLELMARQGLATWPEARIHQAMPA 1001

Query: 805  ITSYCTKNAKLW--PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
            +  +  +              ++  +   L +      +     ++  V+       +  
Sbjct: 1002 MLRWLQQQGHAEKQAHDAAAVVVQLLLTTLRSADGQWVLQAREGADAEVAWSYADASE-- 1059

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNK 918
            +    +D+  +     +I +YKT        E         +  QL  Y  +  D     
Sbjct: 1060 LKRYVVDRTFVENGVRWIIDYKTVALAADISEEQLRAQVARYRLQLDNYASLFADQ--GT 1117

Query: 919  SLVCLLIYVSEPKVFIIPQN 938
             +   + +++  ++  +   
Sbjct: 1118 LVRKAIFFLALGRLVELAAE 1137


>gi|86143639|ref|ZP_01062015.1| putative helicase [Leeuwenhoekiella blandensis MED217]
 gi|85829682|gb|EAQ48144.1| putative helicase [Leeuwenhoekiella blandensis MED217]
          Length = 1047

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 141/942 (14%), Positives = 305/942 (32%), Gaps = 138/942 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE----------RF 66
             + +          +  Y+  S +     I + A  L     +  +E             
Sbjct: 204  LQRIKSKSLDDFEQLKAYLKTSTKHLEKEIQEAASALITFIASNGLEATHFTRKYLPKAL 263

Query: 67   SLLSSFFLTQKFTPQ-------KNIITQEINKKSPDLKEKLKKS----QDEFIKIRDRFN 115
              ++       F  +       + + T+   +    + +KL        +    +  +  
Sbjct: 264  DKMAEGDFNVNFNTKWVQNLGQEPMYTKSQKEPIKAILDKLSTEITSQFNAIKPLIFKLK 323

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL---DFEDLIINTNDLLKKRDVSAWIRYK 172
              +     +  L+L + +    E+ K +N ++   DF +LI            + +I  +
Sbjct: 324  LNEELYKKITPLSLLQLIQQEVEKIKSENNLVLISDFNELIHKNIA----NQPTPFIYER 379

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            + +   +  IDE QDTS++QW  +  L ++      T S   ++  VGD KQ+IY + G 
Sbjct: 380  LGERYENYFIDEFQDTSVLQWSNLVPLIDNAVSTSQTESVSNSVMLVGDPKQAIYRWRGG 439

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            E ++ +R  +       N  +    I+LP ++RS   I+   ++ F+   +    S    
Sbjct: 440  EAEQFIRLSKSEVNPFQNEDK--KTIDLPQNYRSYDQIINFNNEFFTHVSS--DFSYAEY 495

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              I    +       +     +     +  +     +                   +  T
Sbjct: 496  ENIYKSGNAQQINHRIGGQVTLNFIEGNTVDELTPLYLDE----------------VVKT 539

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            I   +              +  ++ +LVR+  +   I    +       I V+ ++  +L
Sbjct: 540  IETCVSN----------NFELGELCILVRRNSEGVAIAQRLQEE----NIPVISSESLLL 585

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                 ++ ++ L  + +  +                + + +  +     E E  +E+ ++
Sbjct: 586  KQSPQVQFIINLLHYTIEPQSSA------------ITLNILEYLAKNYLEVENAHEFYKE 633

Query: 473  FA-NCGISKFQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                 G + FQ +   I+            ++    I+                    L 
Sbjct: 634  HLKYTGANLFQQLSHQINNFDFEQCALLPIYEAAEYIIR--------CFDLNKNGGAYLQ 685

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             FL+      Q +   + ELI    +    +  +       V+IMT+H AKGLE PVV  
Sbjct: 686  FFLDAIFDFAQKNSGGIPELIIWWNRKQDKLSISTPPTSEAVQIMTIHKAKGLEFPVVIY 745

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPG----IPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
                ++++S+        +P  ++  G    +     +    N   + L  H +   Q +
Sbjct: 746  PFAHTELYSNHTDTYNWYLPESDNYQGFEALLLGQKAELTEYNEQTAMLYHHKRIQQQLD 805

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
               +LYV +TR+ +QL I   +   N +  N    +                     +  
Sbjct: 806  TINVLYVALTRSVEQLHIISKTGKDNAEPKNFADLF---------------------VQY 844

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                    S     +      ++  +   ++    +L S  + D +         +    
Sbjct: 845  LSSKNLYESETRFYSFGDATRKSGSKPASKEASTLRLLSTAREDHD---------LSIVT 895

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
            +       S  +  + G IIH+L+  I T+      + +    T+       K+   L  
Sbjct: 896  QAEALWDDSRQEALSMGNIIHELMAGIKTI--ADIDSAVNKALTR--GWIEQKDVNQLST 951

Query: 827  SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKT 885
             +  L+         +      +     IN   + I    R D++ I    ++++ +YKT
Sbjct: 952  QLRTLISALEEIGFFNHKHL--ILNERDINSKGQTI----RPDRVEIGKNNSVWLLDYKT 1005

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
                         TH  Q+  Y   L+     K ++  LIY+
Sbjct: 1006 GTPN--------ATHKNQVEQYATTLETM-NYKVILKALIYL 1038


>gi|119503547|ref|ZP_01625630.1| DNA helicase II [marine gamma proteobacterium HTCC2080]
 gi|119460609|gb|EAW41701.1| DNA helicase II [marine gamma proteobacterium HTCC2080]
          Length = 721

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 100/580 (17%), Positives = 191/580 (32%), Gaps = 120/580 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            + + YEEA ++  ++DF +L++  ++L LK  +          +    IL+DE QDT+ 
Sbjct: 173 RVYSAYEEACQRGGLVDFAELLLRAHELWLKSPET----LLHYQRRFRTILVDEFQDTNT 228

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L                + AVGD+ QSIY + GA+ + + R           
Sbjct: 229 IQYAWLRVLAGQSIP----------VVAVGDDDQSIYGWRGAKIENIHRFGEDF------ 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST  IL   + + S      G                      +L
Sbjct: 273 --TPAQTIRLEQNYRSTQTILKAANGLISHNFGRLGK---------------------EL 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W        +  + +  S  + F+   +       AR I   I + +       +     
Sbjct: 310 W-------TAGDSGEPISLYAGFNEQDE-------ARFIVERIESWVADGNTRRSS---- 351

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++           +I           + L I++ +A  R ++ 
Sbjct: 352 ------AILYRSNAQSRVLEEAL----IRAQIPYRIYGGQRFYERLEIRNALAYMRLLIR 401

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI------QKFANCGISKFQH 483
           + DD +   +L  P        + ++    R     +++ I      Q F++  +     
Sbjct: 402 RSDDTALERVLNLPPRGIGNKTVEQLRDLARTRQVPMWQAIVIARDEQLFSSRALKALSG 461

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNFTLRN- 539
               + EL          +    ++         +      G   ++ L+E ++      
Sbjct: 462 FTVLVDELDSATLELPLEELTEHVVARSGLVEYHRAEKGERGQARVENLEELVSAAKTFV 521

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +     SLQ+ +                + + V++MT+H+AKGLE P+VFL      +F
Sbjct: 522 PDDTDLPSLQQFLDSAALDAGDA--QADPHEDSVQLMTLHSAKGLEFPMVFLAGMEENLF 579

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                           EE  RL YVG+TRA
Sbjct: 580 PHRMSLDEPG----------------------------------RLEEERRLCYVGITRA 605

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +L++    +       +  T    V +         ++
Sbjct: 606 MQKLVLTYAESRRLHGSESYNTASRFVRELPSELLNEVRL 645


>gi|330988759|gb|EGH86862.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            lachrymans str. M301315]
          Length = 1230

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 126/1004 (12%), Positives = 278/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +     E          LT +   +        +           ++  +    
Sbjct: 272  EKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAF--------EAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDSLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HSAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEGNDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRTQGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +        +      +        LA   A
Sbjct: 485  FLFRNDQGNQVPFSDALAQGRKETLEVDGAPLTALTVWYLESEQPVSGVIYRQQLAASCA 544

Query: 351  YTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++             +   R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFAMLDKPLRGLRPADIAILVRDGKEAQAVRQQLSA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWERRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +  +                    LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADGNSQISLQPT----------EALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      SN       +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNASNSMLHRSALGYLLGGGVALAESAEL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD-----------EQKIPKKLFSPIKND 750
                +D     +     P   P +   +  +                +            
Sbjct: 877  KVWLRDLAQGCDAIALQPVPEPTDERFSAPRNEAALVKLLVPKRCAAENWWIASYSALRI 936

Query: 751  IN------EPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
             +      +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTTGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  -------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                   +      K ++ +   C +           + L  +  + L          + 
Sbjct: 997  AGNEGFAVTAHAPDKLQDAVARRCNRRGWAGWINTLSDWLQHMLNMPLRLSPDATPVALG 1056

Query: 839  TAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQIS 872
                 + Y  E+     S  +N  + D ++                       G ID   
Sbjct: 1057 ELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +  +         +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGTDDTAYTELAMETAILDNRYDLQYVLYLLALHRQLKARMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F+ P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSVSQGAYFVRPPRELIESLDLLFQGKP 1220


>gi|22124272|ref|NP_667695.1| ATP-dependent DNA helicase Rep [Yersinia pestis KIM 10]
 gi|45442925|ref|NP_994464.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Microtus
           str. 91001]
 gi|21957041|gb|AAM83946.1|AE013636_4 rep helicase, a single-stranded DNA dependent ATPase [Yersinia
           pestis KIM 10]
 gi|45437792|gb|AAS63341.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Microtus
           str. 91001]
          Length = 691

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 101/662 (15%), Positives = 211/662 (31%), Gaps = 121/662 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ +    +    + D        +S      L  +    Y+   
Sbjct: 136 KDLTHKWLEDDKTLLQQLVSAISNWKNDLLDPAAAAATARSERD--KLFVHCYGLYDAHL 193

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+K      +R +    + ++L+DE QDT+  Q+++++ L  
Sbjct: 194 KACNVLDFDDLISLPTLLLQKN---LEVRERWQNRLRYLLVDEYQDTNTSQYQMVKLLVG 250

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++                  +I+L 
Sbjct: 251 N----------RARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPA--------LRVIKLE 292

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S                              
Sbjct: 293 QNYRSSGRILKAANILIANNPHVFEKKLFS------------------------------ 322

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E        +   ++    A R+            + ++   +  Q  D  +L R
Sbjct: 323 -----ELSYGDELKVITANNEDHEAERVV---------GELIAHHFVKKTQYSDYAILYR 368

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 369 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIV 424

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+        ++++               G+   Q    ++  +I +
Sbjct: 425 NTPKREIGAATVQKLGEWANLRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWMDGIIRL 484

Query: 495 AQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E +   +
Sbjct: 485 VEREPVAAVRDLIHGIDYESWLFETAPSPKAAEMRMKNVNLLFSWMTEMLEGSELDEPMT 544

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 545 LTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 603

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 604 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 629

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D   +  +   S  +          +        +
Sbjct: 630 CKERRQYGELIRPEPSRFLMELPQDDLNWENERKAVSPEERMQKGQSHLANLRAQLANAK 689

Query: 727 EE 728
           + 
Sbjct: 690 KP 691


>gi|307128610|ref|YP_003880640.1| putative DNA helicase II [Candidatus Sulcia muelleri CARI]
 gi|306483072|gb|ADM89942.1| putative DNA helicase II [Candidatus Sulcia muelleri CARI]
          Length = 701

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 116/607 (19%), Positives = 202/607 (33%), Gaps = 121/607 (19%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           L K+      + D+ +  K       +L +   + A+Y++   +N ++DF+D+++ TN L
Sbjct: 127 LDKNIYRSKSLLDKISMIKNNSFNERNLDITN-IYANYKKYCYQNGIMDFDDILLYTNIL 185

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
             K      I  K  +   +ILIDE QDT+  Q+ +I+ L+               LF V
Sbjct: 186 FNKYPD---ILNKYQEYFKYILIDEYQDTNYSQYRIIKLLSL----------KHNNLFVV 232

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIYSF GA    +L  K+  +           II L  ++RST  I+ V +++ S
Sbjct: 233 GDDSQSIYSFRGANINNILNFKKDYKNAV--------IIRLEQNYRSTKYIVDVSNQIIS 284

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
           + +                           LW +       +      S+   +      
Sbjct: 285 LNKRKIDKK---------------------LWTKNKIGKKIKIYKAFSSFEESY------ 317

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A TI             K + ++  D  VL R    +  +          
Sbjct: 318 --------FVANTI---------SKLKKTKKLKYSDFCVLYRTNAQSRSLEESF----IK 356

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
            KI               IKDL+A  R I++  D+ S + ++  P     E  + KI   
Sbjct: 357 KKIPYNIYGSISFYKRKEIKDLIAYFRLIVNLNDEESLIRIINYPKRGIGEVTLKKILFL 416

Query: 460 RHETE----------TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
             + E            Y+ I       +    +  K I    +             I  
Sbjct: 417 SKQNEKRIFEILKNINNYKSIINIDQKILDNISNFCKKIL-FFNKRLDEDAFLLSKEISE 475

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKR 563
                ++       + ID ++EF N            +N   SL   +  L        +
Sbjct: 476 TFGLLEEIKKDKIKQGIDNVEEFFNSISTFVEDKKKIKNEEISLNAYLESLYLDLDLDYK 535

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
            ++     V +MT+H +KGLE P++F++    ++F                         
Sbjct: 536 FNNLTKESVSLMTIHLSKGLEFPIIFIIGLEEKIFPS----------------------- 572

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                      ++    +   EE  RL YV +TRA + + +    N     K        
Sbjct: 573 -----------ILSISSQLEIEEERRLFYVALTRAKEDIFLTFSKNRYKWGKIVPTICSR 621

Query: 684 MVYDSFH 690
            V +   
Sbjct: 622 FVKEIDE 628


>gi|163754620|ref|ZP_02161742.1| putative helicase [Kordia algicida OT-1]
 gi|161325561|gb|EDP96888.1| putative helicase [Kordia algicida OT-1]
          Length = 1084

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 131/824 (15%), Positives = 267/824 (32%), Gaps = 101/824 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
            K  +          L  +L +      +     +  K F      L++   +    E  K
Sbjct: 326  KKALDPAKASTIDALLPQLNEIYLSCKENVYELSFLKNFYKNTTPLSVLNAIQQELETIK 385

Query: 142  KKNCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            ++  +L   +F  LI  T       + + +I  ++ ++  H  IDE QDTS +QWE +  
Sbjct: 386  EEQNLLLISEFNTLISETIK----DEPAPFIYERLGEKYKHYFIDEFQDTSEMQWENLIP 441

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            L  +    +       TL  VGD KQSIY + G + ++ ++              +   I
Sbjct: 442  LISNKLQTQTAEGKGGTLTIVGDAKQSIYRWRGGKAEQFIKL----SHGENPFFVQDKKI 497

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            ELP ++RS  +I+   +  F                  H S    Q   + +++    Q 
Sbjct: 498  ELPRNYRSYDEIINFNNGFF-----------------PHISQFFHQENYIDIYKNGSFQE 540

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
             +       S+  + ++   E    I+  ++   I   +              + KDI V
Sbjct: 541  TNHKKGGFLSF-EFVEAKTVEEEFEIIPEKVIEKIEETLQKG----------FKYKDICV 589

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            L R++ +   I      L +  +I ++ ++  ++    A++ +  + R  +  +++   +
Sbjct: 590  LTRRKSEGIAIAD----LLSSKEIPIISSETLLIKRSRAVQFINDILRLAIQPKNNEVKL 645

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
             +L                       +      K       +                  
Sbjct: 646  HLLN-------------YLATEKLVISNTHDFLKTHVKQDPEVLFDALDFDFDFTYFLQL 692

Query: 499  SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
            S ++     +              ++    +  FL+F L   Q         +   E+  
Sbjct: 693  SLYEAVEYCVR--------AFHLTDKSDAYVQFFLDFVLEYTQKKQLGFAGFLEHWEKKK 744

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM---PSLNDD 615
              +    S + N V+IMT+H +KGLE PVV      + ++     K  + +        +
Sbjct: 745  NHLSIIASGSENAVQIMTIHKSKGLEFPVVIFPFANTDIYKEIEPKLWYPINAEDFNGFE 804

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                      +    +   L +  +   + +   +LYV  TR   QL +    +      
Sbjct: 805  EAYLNLNSSIQEYGELGETLYQERQSQLELDNFNILYVAFTRPVQQLHVITKKDVDRNGN 864

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
               +T+  +               +      + W     S    E+     E    + + 
Sbjct: 865  ERLQTFSGL--------------FINYLKQLERWDNEISSYTFGESENNLAEADNSEGIH 910

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
              K  K + +  ++            +    +  L    S  +   +G +IH +L  I  
Sbjct: 911  TIKQEKFISTAKEDH----------NLHLMTQQGLLWDTSQEEAIEKGNLIHDVLAQIKY 960

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
                     +  Y +K   +   ++ + L  SI R++ +  +      D  + V     I
Sbjct: 961  --PSDIDFVLDEYISK--GIIDEQQREKLAESINRVVNHTEIAPYFHQD--NTVYNEKDI 1014

Query: 856  NCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPY 898
                  I+   R D+I ++      I +YKT  H P  +E I  
Sbjct: 1015 ISSNGTIL---RPDRIVVNPNNETIIIDYKTGKHDPFYVEKIYE 1055


>gi|297620279|ref|YP_003708416.1| exodeoxyribonuclease V beta chain [Waddlia chondrophila WSU 86-1044]
 gi|297375580|gb|ADI37410.1| exodeoxyribonuclease V beta chain [Waddlia chondrophila WSU 86-1044]
          Length = 1120

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 141/930 (15%), Positives = 271/930 (29%), Gaps = 99/930 (10%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +N F +   +  E + K     P     D+  +       G           +   +   
Sbjct: 232  RNEFFIHFKDRIERLKKVHCLEPIKLREDLEVFSKSMKVNGFDKSQLIILP-EILKKNGV 290

Query: 62   IEERFSLL----SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
             E  F  L               +K     +     P+L E L     +F     ++  Y
Sbjct: 291  DESDFECLVENGHGLLHFLNPANKKVKFPADDQFHYPNLPEILNDELCQF-----KYKNY 345

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
             + +       L K      EE         F+DL+      LK+      +R       
Sbjct: 346  GIARMAYDCKQLMKRQFE--EEELHN-----FDDLLELMRQKLKEEKFLKDVR----SRY 394

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               ++DE QDT   QWE+ +        G         L+ VGD KQSIY+F  A+    
Sbjct: 395  RAAIVDEFQDTDPRQWEIFKKTFPPDDSGWG------RLYLVGDPKQSIYAFRQADIYTY 448

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L       +         ++  L  ++RS   ++  ++ +FS P +   +      T  +
Sbjct: 449  LEAADAIGRE--------NLYSLDTNYRSQPSLVKALNHLFSAPFSEGWMPLPRLNTYMN 500

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
              +       +    Q        C  Q E ++         S        I   I  + 
Sbjct: 501  VPTVQWDDSKIDRVFQDNLSALHWCIHQTEKFSV------TNSEDEAFFPFIVQEIQRLR 554

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                         I      VLV  R     ++   +     + +         +++ + 
Sbjct: 555  KE---------HSIPLNSFAVLVADRHQAKRVSEYLK----RWNLPSQRQRVEPISESMV 601

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            I  +  L   I+   D+ S    L  P   ++ D+I ++       E    + +      
Sbjct: 602  IPSMRELLYGIMHHRDESSMKVALGGPFLRWTADEILQLDEDSVYAEVQARFRELDEIWK 661

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                   ++ +          S       +L  + G Q +           + E L  + 
Sbjct: 662  SDGLSVCMEKL---FMSRWKDSSKTVLETLLEDENGSQFYAD------FQHVMELLLDSP 712

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            +    + S L++ + ++ +    +KR      + V+I+T+H++KGLE  +VF +   ++ 
Sbjct: 713  KTPSEAISFLEKFLFDVSKSEEELKRRLDTGQDCVQIITIHSSKGLEYDIVFALGLVNRP 772

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                             D    I     +   +  S      +     E  R LYV  TR
Sbjct: 773  KK---------------DDLYYIADGYLRFVLDQESADFVKYRDEKDAEKMRSLYVACTR 817

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            +  +L I      SN            V       E   K    N +     +       
Sbjct: 818  SKYRLYIPYIDCKSNGASGTLSPMELFVGQFSKPLESFLKESSENRLLSYTVLNDVDFDL 877

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
              E      +      +  + + K + S            + S    +    ++S  +  
Sbjct: 878  LKEEDLEAPKLMAPTEVVVRAVSKMMTSFSGLAN--VVASDQSGAPHQFDNGIKSCHTLP 935

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-- 835
                 G ++H LL+ I    E    + + S           +    L   +   +  P  
Sbjct: 936  SGSATGTLLHTLLEEIPF--EVICHDAVRSITPFIKGTQYEEWKDVLAEIVFHAVSTPFI 993

Query: 836  ---MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
                +          E       N       + G ID +   +   ++ ++K++      
Sbjct: 994  KGCALKDIDPNQCKFETEFLYSYNLES---YMKGFIDLMFAHEGKFYLLDWKSNWLGTSS 1050

Query: 893  I---EHIP------YTHIAQLSIYEKILKD 913
                E +       + +  Q  IY + LK 
Sbjct: 1051 EIYREDVLVDSMNHHDYFKQAEIYTEALKK 1080


>gi|217076812|ref|YP_002334528.1| ATP-dependent nuclease, subunit A, putative [Thermosipho africanus
            TCF52B]
 gi|217036665|gb|ACJ75187.1| ATP-dependent nuclease, subunit A, putative [Thermosipho africanus
            TCF52B]
          Length = 1041

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 153/906 (16%), Positives = 307/906 (33%), Gaps = 107/906 (11%)

Query: 77   KFTPQKNIIT--QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
            K   +K  +   +++NK    LK+ LK  + E  +       + + +    SL + KY+ 
Sbjct: 179  KDEIRKLFVNEYKDLNKFMETLKDVLKHWRAEMKRASVPEKLFSIDEIRSKSLEVFKYML 238

Query: 135  ----AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                  YE     N   DF+ ++  T D L++ ++    R K  ++  +I++DE QDT+ 
Sbjct: 239  LISKEIYEGYTIDNFEFDFKAVLEKTLDFLEQDEM----RKKYQKKFKYIIVDEFQDTNY 294

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +Q E+   L          H     LF VGD KQSIY F  A+    L  +   +KR   
Sbjct: 295  LQKELFDKL----------HGEDNYLFYVGDRKQSIYRFRNADVSVFLETQNEFEKRGE- 343

Query: 251  AGQKFSIIELPLSFRSTADILTVVD-----KVFSIPENAQGLSEDSTTTIRHRSSRIGQ- 304
                  ++ L  ++RS   ++   +     K+FS        +E+       ++      
Sbjct: 344  -----KVLALKENYRSNYILVKYFNFISEKKIFSKTIIKNSKNEEVDEFEVFKTISPDLY 398

Query: 305  -------------VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            V   E    +  +             +   +E S +++A  I  
Sbjct: 399  NKLWYNKEFDESIPMRVYDGEIPALKDKNSRIKYVLVDNGGKNKKEREKSEALVAAYI-- 456

Query: 352  TISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
             I N++G             R I+  D ++L   R        + + +   + I +    
Sbjct: 457  -IKNLVGKTMTVKEKDNYVKRKIKYSDFVIL---RSTLSNQEEVYKNVFKKFNIPLHVVS 512

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL----FNFSEDDIFKICTQRHETE 464
                 + L IK L+     + +  +D  F     SPL    F      + K    + E  
Sbjct: 513  SKGFFERLEIKALLNALYAVQNPNNDFYFTQFFFSPLVLGKFGDYVKIVSKNTQLKKEGI 572

Query: 465  TVYEYIQ--KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            +     Q  K       K    I+ + +   +  F  P +    ++      ++ +    
Sbjct: 573  SDESLFQTAKKIKFDDEKVNKAIEVLAKYSQLKYFIRPAEVLKGLVRELNYFEKLVYFED 632

Query: 523  NE-VIDVLDEFL--NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
             +  I  + + +     +     S+S L +LI +L     +       N + V++MT+H 
Sbjct: 633  FQNAILNVKKLILDASAIDQMAESFSQLVKLIEKLSLENESEAATEDENSDSVKLMTIHA 692

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS---RNNIVSDLI 636
            +KGLE  +V L D  S+                        +    +       I   + 
Sbjct: 693  SKGLEFKIVILGDIYSEEKKSNRNVMFSKERETTYYILRKFFDDLKQETKHDERIFEAIK 752

Query: 637  KHLKKSTQE--EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            +  K    +  E  R LYV +TRAS+  I     ++ +   +N           +     
Sbjct: 753  EFYKDGVYDKTEDRRKLYVAITRASEMFIPIIFKDSKDNTLAN-----------YLKLSD 801

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
             +K +L   I   E +  +       +    ++   K+ + +  +        K+ I+ P
Sbjct: 802  QEKEELKGLIGDFEEVEIDVEKDINFDEESTKQVFEKKDIPQVHLKDLNGLAYKSYIS-P 860

Query: 755  YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
              L     + K     + LL  ++  + G  IH+ L  + T+ +         Y  +   
Sbjct: 861  TTLYGYLGNEKEAKEEDILLLFDEKTSEGSDIHRKLSSVNTISQ-------LRYLEE--- 910

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873
                         I ++  +  + +     +  SE  V        +  ++ G  D++  
Sbjct: 911  -----------EKILKVKISDKLESLFKGANVISEWRVVKPFFVNDRRYMLFGIPDKVLF 959

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
                I++ ++K   +V  +       +  Q+  Y  +L+D          +I     +  
Sbjct: 960  KGNKIYVLDFK---NVDFKNSKNIEKYKFQIKFYMYLLRDF--GAPEKGYIISTKTGEFI 1014

Query: 934  IIPQNK 939
             +   +
Sbjct: 1015 EVSLEE 1020


>gi|187930550|ref|YP_001901037.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|187727440|gb|ACD28605.1| UvrD/REP helicase [Ralstonia pickettii 12J]
          Length = 706

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 104/627 (16%), Positives = 191/627 (30%), Gaps = 130/627 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R K    + + L+DE QDT+
Sbjct: 178 AALVYRNYVATLHAYQAVDFDDLIRIPAELFARNEE---VRLKWQNRLRYFLVDEYQDTN 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L         +H       AVGD+ Q+IY + GA    +   +        
Sbjct: 235 ACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNLKLLQTDFPN--- 285

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +        +  S   +              
Sbjct: 286 -----LKVIKLEQNYRSTVRILNAANAVIAQNPKLFEKTLWSEHGM-------------- 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                             + TS  D           A  + +          + ++  +R
Sbjct: 327 --------------GDAINVTSAND-------EEHEAESVVFK---------LSAHKFER 356

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      L   + R      +I  V +      D   IKDL A  R I 
Sbjct: 357 RAQFRDYAILYRGNFQARLFEQILR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 412

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E         + A   +   +
Sbjct: 413 NADDDPAFIRAITTPKRGVGNATLEVLGSFAGQAKVSLFEAAMMGGIEAQLAPRQLEPLR 472

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLR 538
              ++I  L   A           ++               R        + EFL++  R
Sbjct: 473 VFCEFIVRLSDRAAKEPAATLLDEMMEGIHYEAYLYDTYDERQAQNKWTNVLEFLDWLKR 532

Query: 539 ---------------NEQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                           +          +L EL   +        R    + + VR+ T+H
Sbjct: 533 KGTKPEKESEEDATGFDNADGLMDAGKNLLELTQTIALISMLEGR--EEDPDAVRLSTLH 590

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H                                      
Sbjct: 591 ASKGLEYPHVFLVGVEEGILPHCREDDELT------------------------------ 620

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 EE  RL+YVG+TRA   L I         +++        + +    ++     
Sbjct: 621 --DEKIEEERRLMYVGITRAQRSLHISWCKKRKRARETVVCEPSRYIAEMKLGEDAGPTP 678

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLE 725
           + T      +              P+ 
Sbjct: 679 EDTMPAMSPKDRLGALKGLLAAKKPVA 705


>gi|212711218|ref|ZP_03319346.1| hypothetical protein PROVALCAL_02290 [Providencia alcalifaciens DSM
            30120]
 gi|212686386|gb|EEB45914.1| hypothetical protein PROVALCAL_02290 [Providencia alcalifaciens DSM
            30120]
          Length = 1203

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 129/890 (14%), Positives = 268/890 (30%), Gaps = 136/890 (15%)

Query: 106  EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
               ++ D      +    L        +       K+    L F+DL+   +  L  +D 
Sbjct: 317  AVFRLIDELLAQNLTIKDLIIPQAISEVRQTIAHEKQTRGELGFDDLLTRLDSAL-HKDG 375

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +   I +     +IDE QDT   Q+ + + + ++             L  +GD KQ+
Sbjct: 376  GELLAEAIAKRFPVAMIDEFQDTDPQQYRIFQRIYQEA--------DETALLFIGDPKQA 427

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY+F GA+    +  K       T          L  ++RS+  ++  V++VF   EN  
Sbjct: 428  IYAFRGADIFTYIAAKTQVSAHYT----------LETNYRSSQHMVEAVNQVFHHAENPF 477

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
               +    ++    S   +             HD +       W    +++        +
Sbjct: 478  IFEQIPFQSVNFAQSNSDK----------KLIHDGKEVKALTFWLQQAEAVSVSEYEQAV 527

Query: 346  ARRIAYTISNMIGTDTI-----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
            A++ A  I   +           +  +K  ++A DI VLVR R++  LI      L    
Sbjct: 528  AQQCAAQIGEYLAGGQQGFTYFENKQQKTPVEASDITVLVRSRREAVLIRDALNQLNIP- 586

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
              SV  ++R  +      K+++ L   +L+ E +      L + L   + +DI  +    
Sbjct: 587  --SVFQSNRESVFATQEAKEILWLLLAVLTPEKERVLRSALATGLLGLTAEDIDNLNYDE 644

Query: 461  HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
               E + +   ++A       + V+  +  ++              +L   +G ++ +  
Sbjct: 645  KAWEALVDEFARYAVIWRK--RGVLPMLRGIMSQRH------IAETLLSGTEGERRLMDL 696

Query: 521  FGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                    + E L      L  E      L + I+  +      +    ++ + V+I T+
Sbjct: 697  M------HIGELLQEMSLQLEGEHTLTRWLAQQIAHPDHQSDAQQMRLESDRHLVQISTI 750

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE  +V+L    + +   K +                     +K   +     ++
Sbjct: 751  HKSKGLEYKIVWLPFASNFLPQSKGLFHDR-------------NDYMTKLDLDDAEKYVE 797

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +    E  RLLYV +TRA          +I  +   S     +      ++      
Sbjct: 798  LADEERLAEDLRLLYVALTRAIYHCSVGVAPLIKGNRKKSGNTDLHLSALGYLLQKGQEG 857

Query: 692  DE-------------------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
            D                              +                   H   T    
Sbjct: 858  DASLLSNMLDVISNDVIDIKPIVASQMARLNLTKETDCELYAREISRHFDDHWRVTSYSG 917

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
                    +E++    L              +      + + N  +     +    G  +
Sbjct: 918  LSYSSSHGEEEQTLSALQFANSLAPKMDIEASQDVNAEEIQENQLTPHQFPKGSAPGTFL 977

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENPMM--TTAMSC 843
            H L++ I    E   +       +    +  A   +  L +I  + L +  +  +   + 
Sbjct: 978  HSLMEEIDFSGEISSQWLEEKLQSAGFDIQWAPMLQVWLNAILNVPLADDGLCLSALPAQ 1037

Query: 844  DSYSEVSVSGKIN--------------------------CPKKDIIISGRIDQISISQQN 877
            D   E+     I+                            +   I+ G ID     +  
Sbjct: 1038 DRLDEMQFYLPIDSLLNAKDVDRVTHQHDPLSKHCPPLNFEQVQGILKGFIDLTFCWKGK 1097

Query: 878  IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPNK 918
             ++ +YK+++                 I + +  Q  +Y   L      +
Sbjct: 1098 FYLLDYKSNYLGEDASYYTQEAMADAMIDHRYDLQYQLYSLALHRFLQQR 1147


>gi|74316184|ref|YP_313924.1| ATP-dependent DNA helicase Rep [Thiobacillus denitrificans ATCC
           25259]
 gi|74055679|gb|AAZ96119.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 660

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 101/654 (15%), Positives = 202/654 (30%), Gaps = 121/654 (18%)

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           + +F+ L   F          I+++ I        ++++++       ++   +     +
Sbjct: 99  DAKFAELKPAFSILDSADAAGIVSEIIKTTDK---QEIRRAVSRISLWKNELKSPAAALA 155

Query: 123 TLAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +       +   +   Y+   +    +DF+DLI    +LL      A +R K    + HI
Sbjct: 156 SAEDDNARVYAKIYDRYDATLRAYQAVDFDDLIRLPAELLDTH---AELREKWQNRLRHI 212

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT++ Q+ +++ LT                 AVGD+ Q+IY + GA    + + 
Sbjct: 213 LVDEYQDTNVAQYRLLQKLTGVRAA----------FTAVGDDDQAIYGWRGASADNLRQL 262

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                           +++L  ++RST  IL   + + +                     
Sbjct: 263 NEDYPH--------LHVVKLEQNYRSTVRILKAANSLIANNPKLFEKR------------ 302

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW  +      Q  P ++                  A  +           
Sbjct: 303 ---------LWSDLGHGDAIQVMPTKDD--------------EHEAESVVMR-------- 331

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            + S+  +   + +D  +L R      +     R  K    +    +      D   IKD
Sbjct: 332 -LLSHKFQHRTEWRDYAILYRGNYQARVFEQALRNEK----VPYQLSGGQSFFDKAEIKD 386

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKF 473
           ++A  R I + +DD +F+  + +P        + K+            E         + 
Sbjct: 387 VIAYLRLIANSDDDPAFIRAVTTPKRGIGAATLEKLGQVAATLHVSLFEAVFSAAAASQI 446

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV----IDVL 529
               ++       +I+ +          +    +L           +          + +
Sbjct: 447 GERHLTPLTEFCNFINRMEERVAREPAGELLDDLLKTIGYEVYLFDQDDQRAAQSKWNNV 506

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            EF  +  +  +    +L +L   +        R      + VR+ T+H AKGLE   VF
Sbjct: 507 LEFAAWITKKGEEDEKNLLQLTQTIALITLLEGRE-EEESDAVRLSTLHAAKGLEFGHVF 565

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           LV     +  H                                      + +   EE  R
Sbjct: 566 LVGVEENILPH-----------------------------------RDAVDEGRLEEERR 590

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           L+YVG+TRA   L +   S     ++S        + +        +K     +
Sbjct: 591 LMYVGVTRARKSLTLSYCSRRKRARESVACDPSRFIDELGDEVRMPEKPTTAEA 644


>gi|328676870|gb|AEB27740.1| ATP-dependent DNA helicase Rep [Francisella cf. novicida Fx1]
          Length = 671

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/617 (16%), Positives = 191/617 (30%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 138 QAKISFWKSALLTPDEVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 198 ---SNIQKLWADKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 297 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 321

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 322 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        I K+     + 
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATIHKLGEYASQH 428

Query: 464 ETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +        +  +            I           S  +        +     
Sbjct: 429 HCSFFHTLYSLENFELRDFTKKNLVSFKDLILNTQQQINTSISVQELKNIINSFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 634 IDELPETDLYWVGTEKE 650


>gi|300689860|ref|YP_003750855.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
 gi|299076920|emb|CBJ49533.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07]
          Length = 705

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 104/627 (16%), Positives = 186/627 (29%), Gaps = 130/627 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L    +    +R K    + + L+DE QDT+
Sbjct: 178 AALVYRNYVATLHAYQAVDFDDLIRIPAELFASNEA---VRLKWQNRLRYFLVDEYQDTN 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L         +H       AVGD+ Q+IY + GA    +   +        
Sbjct: 235 ACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNLKLLQTDFPN--- 285

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +        +                     
Sbjct: 286 -----LKVIKLEQNYRSTVRILNAANAVIAQNPKLFEKT--------------------- 319

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW +                          +     A  + +          + ++  +R
Sbjct: 320 LWSEHGMGDAVNVAGA--------------NDEEHEAESVVFK---------LSAHKFER 356

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      L   + R      +I  V +      D   IKDL A  R I 
Sbjct: 357 RAQFRDYAILYRGNFQARLFEQILR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 412

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E         K A       +
Sbjct: 413 NADDDPAFIRAVTTPKRGVGNATLEVLGAFAGQAKVSLFEAAMMGGIEAKLAPRQHEPLR 472

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLR 538
              ++I  L   A           ++G              R        + EFL++  R
Sbjct: 473 VFCEFIVRLSDRAAREPASTLLDEMMGGIHYEAYLYDTYDERQAQNKWTNVLEFLDWLKR 532

Query: 539 ---------------NEQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                           +          +L EL   +        +    + + VR+ T+H
Sbjct: 533 KGTKPENLEAEDATGYDNADGLMDTGKNLLELTQTIALISMLEGK--EEDPDAVRLSTLH 590

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H                                      
Sbjct: 591 ASKGLEYPHVFLVGVEEGILPHCREDDDLT------------------------------ 620

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 EE  RL+YVG+TRA   L I         +++        + +   +D      
Sbjct: 621 --DEKIEEERRLMYVGITRAQRSLHISWCKKRKRARETVVCEPSRFIAEMKLDDGAGPTP 678

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLE 725
           + T      +              P  
Sbjct: 679 EDTMPAMSPKDRLGALKGLLAAKKPAA 705


>gi|282889815|ref|ZP_06298354.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500389|gb|EFB42669.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 677

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/610 (15%), Positives = 186/610 (30%), Gaps = 138/610 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A+ +    + + +    +DF +L+  T  L +       +  K  +   +I+IDE QD
Sbjct: 173 EFARTIYQRLQASLRAYNAVDFNNLLGLTVQLFENFPD---VLEKYQERYRYIMIDEYQD 229

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+++   L+  +          + L  VGD+ QSIY + GAE K +L         
Sbjct: 230 TNPVQYKLASLLSRKY----------QNLCVVGDDDQSIYGWRGAEVKNILDF------- 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   + I+L  ++RST +IL   + V S  +        S                
Sbjct: 273 -----SDATTIKLEQNYRSTNNILKAANGVISHNQTRYQKVLWSNR-------------- 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                              E + +  D           A  + Y I++M           
Sbjct: 314 -------------GEGDLIEVFHAPSDKEE--------AEAVVYRIAHMREK-------- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKND------YKISVVGNDRFILTDHLAIKDL 421
              ++ +DI +L R    + L                   I           +   ++DL
Sbjct: 345 -YQLKWRDIAILYRSNALSRLFELALMNYAWKDGDQWIKGIPYEIFGGTEFYERREVRDL 403

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVY------------- 467
            A  R I +  D  + + ++  P     E  +       R     ++             
Sbjct: 404 FAYLRVIANPLDQEALLRIINQPRRGIGEASLDAATAYNRSHQLPLWNVLKSLANREPAV 463

Query: 468 -EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-----ISRF 521
            E    ++   +   Q  I  +       +    +     ++ A   ++        ++ 
Sbjct: 464 QEVSSHWSQKALDSLQGFIGILENSKQRFEQDFSYALTE-LIEAVNYKKAINDEVKSAQM 522

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQE---LISELEQYPPTIKRAHS----ANHNEVRI 574
            +   + + EF++  +   ++      +   L   +   P       S       ++V +
Sbjct: 523 RDFKWENVQEFVSSLVEFNESFLKEFNKTPTLHDFITSTPLQQDWNQSQKNTQQKDQVNL 582

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT H++KGLE    FLV     +  H+                                 
Sbjct: 583 MTFHSSKGLEFKACFLVGIEDHIIPHEKSL------------------------------ 612

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                K+   EE  RL+YVG+TRA   L I          K         +++       
Sbjct: 613 -----KEVGVEEERRLMYVGITRARQFLTISMARKRKRMGKEYASKPSRFLHEIPKELLN 667

Query: 695 VKKIKLTNSI 704
           + K   +  I
Sbjct: 668 ITKWDQSLEI 677


>gi|53803604|ref|YP_114566.1| ATP-dependent DNA helicase Rep [Methylococcus capsulatus str. Bath]
 gi|53757365|gb|AAU91656.1| ATP-dependent DNA helicase Rep [Methylococcus capsulatus str. Bath]
          Length = 667

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 113/711 (15%), Positives = 230/711 (32%), Gaps = 136/711 (19%)

Query: 20  LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
           L      +   ++ + +L +E        KA  L+ A      ++R +LL    L +   
Sbjct: 70  LADDKSLRGLTVSTFHALGLEI--VRREHKALELKSAISIFDEQDRQALLRE--LIRHGD 125

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            + +       +++     ++ + ++ FI         +              L   Y  
Sbjct: 126 HRFDP------EQADAYAARISRWKNRFIT------PARARSLDEPDAAWIAALYEAYMH 173

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K    +DF+DLI+    L ++    A +  K   +I ++L+DE QDT+  Q+E+I+ L
Sbjct: 174 HMKAYNAVDFDDLILLPVMLFQQH---AEVLDKWRNQIRYLLVDEYQDTNQTQYELIKLL 230

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
           T           +      VGD+ QSIY++ GA+P+ + + +    +          +I+
Sbjct: 231 TG----------TLGKFTVVGDDDQSIYAWRGAQPENLAQLRNDFPR--------LKVIK 272

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS   IL   +++     +       S                            
Sbjct: 273 LEQNYRSMGRILKAANQLIGNNPHIFEKKLWS---------------------------- 304

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
           +           + D + +       AR+IA  I           +  +   +  D  +L
Sbjct: 305 AMGQGDPIRVLRHRDEIAE-------ARQIAADI---------VHHKFRHNTRFADYAIL 348

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    + L     R       +    +       +  +KD+MA  R +++ +DD +F+ 
Sbjct: 349 YRGNHQSRLFERALREF----SVPYHISGGTSFFGYTEVKDVMAYLRLLVNPDDDAAFLR 404

Query: 440 MLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELI 492
           ++  P        + K+         ++Y    +             + +   ++I +  
Sbjct: 405 IVNVPRREIGPTTLEKLGQYANRRHISLYAACFELGLEQSLPANAVQRLRRFGEHIADTA 464

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID------VLDEFLNFTLRNEQNSY-- 544
                    +     LG     + ++    ++          + E L++  R  +     
Sbjct: 465 DRTARGDVFEIIDDFLGTIGY-ENWVRENSSDAKAAERKFGNVRELLDWLRRIAEKDGEN 523

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            SL E +++        +       + V +MT+H AKGLE P V+LV     +  H+   
Sbjct: 524 RSLAETVAKATLLDVLDRNQEDDTGDRVSLMTLHAAKGLEFPYVYLVGMEENLLPHQTSI 583

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                               +   EE  RL YVG+TRA   L +
Sbjct: 584 D-----------------------------------EDNIEEERRLAYVGITRARRDLTL 608

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
              S+     +         + +    D      +  +   K E      +
Sbjct: 609 SYCSHRKRYGEMIGCEPSRFLAELPQEDLEWPDRQPLDPETKRERGRASLA 659


>gi|241664737|ref|YP_002983097.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240866764|gb|ACS64425.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 706

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 102/627 (16%), Positives = 190/627 (30%), Gaps = 130/627 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R K    + + L+DE QDT+
Sbjct: 178 AALVYRNYVATLHAYQAVDFDDLIRIPAELFARNEE---VRLKWQNRLRYFLVDEYQDTN 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L         +H       AVGD+ Q+IY + GA    +   +        
Sbjct: 235 ACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNLKLLQTDFPN--- 285

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +        +  S   +              
Sbjct: 286 -----LKVIKLEQNYRSTVRILNAANAVIAQNPKLFEKTLWSEHGM-------------- 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                             + TS  D           A  + +          + ++  +R
Sbjct: 327 --------------GDAINVTSAND-------EEHEAESVVFK---------LSAHKFER 356

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      L   + R      +I  V +      D   IKDL A  R I 
Sbjct: 357 RAQFRDYAILYRGNFQARLFEQILR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 412

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E         + A   +   +
Sbjct: 413 NADDDPAFIRAITTPKRGVGNATLEVLGSFAGQAKVSLFEAAMMGGIEAQLAPRQLEPLR 472

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNF--- 535
              ++I  L   A           ++               R        + EFL++   
Sbjct: 473 VFCEFIVRLSDRAAKEPAATLLDEMMEGIHYEAYLYDTYDERQAQNKWTNVLEFLDWLKR 532

Query: 536 ------------TLRNEQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                           +          +L EL   +        +    + + VR+ T+H
Sbjct: 533 KGTKPEKDDDEEAAGFDNADGLMDAGKNLLELTQTIALISMLEGK--EEDPDAVRLSTLH 590

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H                                      
Sbjct: 591 ASKGLEYPHVFLVGVEEGILPHCREDDELT------------------------------ 620

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 EE  RL+YVG+TRA   L I         +++        + +    ++     
Sbjct: 621 --DEKIEEERRLMYVGITRAQRSLHISWCKKRKRARETVVCEPSRYIAEMKLGEDAGPTP 678

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLE 725
           + T      +              P+ 
Sbjct: 679 EDTMPAMSPKDRLGALKGLLAAKKPVA 705


>gi|237814293|ref|YP_002898744.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346]
 gi|237505661|gb|ACQ97979.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346]
          Length = 695

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 98/578 (16%), Positives = 181/578 (31%), Gaps = 130/578 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R +    + ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPTELFARNE---PVRDRWQNRLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RTQFRDYAILYRGNFQARVFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL----- 533
               +I  L   A          D    I         +  R        + EFL     
Sbjct: 466 IFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKR 525

Query: 534 -------NFTLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVH 578
                     +  E   + +   L          ++             + + VR+ TVH
Sbjct: 526 KGTKPEAEQAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H        +                             
Sbjct: 586 ASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDD--------------------------- 618

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                 EE  RL+YV +TRA   L +         +++
Sbjct: 619 ---ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|208779175|ref|ZP_03246521.1| UvrD/REP helicase family protein [Francisella novicida FTG]
 gi|208744975|gb|EDZ91273.1| UvrD/REP helicase family protein [Francisella novicida FTG]
          Length = 671

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/619 (16%), Positives = 194/619 (31%), Gaps = 127/619 (20%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 138 QAKISFWKSALLTPDEVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 198 ---SNIQKLWADKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 297 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 321

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 322 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        I K+     + 
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATIHKLGEHASQH 428

Query: 464 ETVYEYIQKFANCGISKFQHVIKY---------IHELIHIAQFCSPHDF---FTLILGAK 511
              +       +    + +   K          ++    I    S  +        +   
Sbjct: 429 HCSF--FHTLYSLENFELRDFTKRNLISFKNLILNTQQQINTSISVQELKNIINSFIDNI 486

Query: 512 KGRQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
             RQ  I    +E         + E     +N       N   SL  +++++       +
Sbjct: 487 SYRQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDILDR 546

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                N N+V+I+T+H +KGLE   V+++     +  H+                     
Sbjct: 547 DNEDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS------------------- 587

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                           ++  + E+  RL YV +TRA + L I    +     +       
Sbjct: 588 ----------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPS 631

Query: 683 DMVYDSFHNDERVKKIKLT 701
             + +    D      +  
Sbjct: 632 RFIDELPETDLYWVGTEKE 650


>gi|296126522|ref|YP_003633774.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
 gi|296018338|gb|ADG71575.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563]
          Length = 659

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 105/561 (18%), Positives = 182/561 (32%), Gaps = 122/561 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y E +    V+DF+DLI+NT  L ++      +         ++L+DE QD
Sbjct: 159 DIFENVYKKYTEHELNENVMDFDDLILNTIKLFEEE---KKVLNFYRNRFKYVLVDEFQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++I+ LT++             L  VGD+ QSIY+F GA+   +L  ++     
Sbjct: 216 TNPQQYKLIKLLTQNA---------DNDLTVVGDDDQSIYAFRGADVLNILDFEKDYPN- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    I+ L  ++R   D++     +     N    +  S      +         
Sbjct: 266 -------TKIVRLEENYRCPKDVVEAALSIIKNNTNRHEKNVFSNKPNEFK--------- 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                              E+W  Y D           AR +   I ++           
Sbjct: 310 ------------------IENWICYSDLEE--------ARSVVNEIESLFDNG------- 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +AKDI++L R    +       +     + I+          + + IKD ++  R 
Sbjct: 337 ---FEAKDIVILFRTNSQSRAYEKELK----LHSINYKIVGGVGFFERIEIKDSISFLRL 389

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK------ 480
           ++   D+ S    +  P     E     I         ++YE I       +SK      
Sbjct: 390 MMGFGDNFSVRRTVNVPPRGIGEKSFNSIETFANTRKISLYEAIDYADEISLSKKVASSI 449

Query: 481 --FQHVIK----YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDE 531
             ++ +I+     I E I         + F   L        F S          + + E
Sbjct: 450 KAYKSIIEEYGIKIKEDISNEDGIHIEEIFFNFLKDIDYFSIFKSEGNERIITAEENIKE 509

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFL 590
                   +    +    LI+ LE+            N + + +MTVH AKGLE   VF+
Sbjct: 510 LFRGFYDYKNTEPN--ASLITFLEENTLYRDINTENENEDYITLMTVHNAKGLEFDAVFI 567

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 VF H                                       ++   +E  RL
Sbjct: 568 TGLEQGVFPHYFSL----------------------------------EEEGGIDEERRL 593

Query: 651 LYVGMTRASDQLIICKHSNTS 671
           LYV +TRA  +L +       
Sbjct: 594 LYVAITRAKRKLYLTYSKKRR 614


>gi|253998774|ref|YP_003050837.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
 gi|253985453|gb|ACT50310.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
          Length = 665

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 100/636 (15%), Positives = 210/636 (33%), Gaps = 118/636 (18%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           K+ L+++Q +  + ++ F        ++       A  +   Y++  K    +DF+DLI 
Sbjct: 128 KQLLRRTQSQISQWKNAFINPDQAKAQADEELTHAAAKVYQLYQQTLKAYQAVDFDDLIK 187

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
              +L ++   +     K  +++ ++LIDE QDT+  Q+++++ LT              
Sbjct: 188 LPVELFEQHREA---LEKWQRKLKYLLIDEYQDTNACQYKLVKLLTG----------VEG 234

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ Q+IY + GA+ + + +      +          +I+L  ++RST  IL   
Sbjct: 235 RFTAVGDDDQAIYGWRGADVENLRQLTEDFSR--------LKVIKLEQNYRSTVRILRAA 286

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           ++V +                              LW ++ +                  
Sbjct: 287 NQVIANNPKLFDKK---------------------LWSELGTGD--------------LI 311

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +         A  +            + ++  +   Q  D  +L R      +     R
Sbjct: 312 QVSAARDEDHEAESVVMK---------LMAHKFEHRTQFSDYAILYRGNHQARIFEQQLR 362

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
               ++K+    +      D   IKDL+A  R I +++DD +F+    +P        + 
Sbjct: 363 ----NHKVPYTVSGGQSFFDKAEIKDLVAYLRLIANEDDDPAFIRAATTPKKGIGNTTLE 418

Query: 455 KI-CTQRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           ++    R    +++         ++     +       +YI+ +   A      +    +
Sbjct: 419 RLGEYARDHHLSLFAAAFEGDFQRELGARQLEDLLTFCQYINRVQERATRDPAGEMLNDM 478

Query: 508 LGAKKGRQQFISRFGNEVID----VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           L A +              +     + +F  +  +       +L EL   +        R
Sbjct: 479 LNAIQYEAFLYDSEEPRAAESKWKNVLDFTGWLTKKGNEDEKNLLELTQMISLMSMLEGR 538

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
            +    + V++ T+H AKGLE   VFL+     +  H                       
Sbjct: 539 ENGE-PDAVKLSTLHAAKGLEFGHVFLIGCEEGILPH----------------------- 574

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                        + +     EE  RL+YVG+TRA   L I          ++       
Sbjct: 575 ------------RESIDTDRIEEERRLMYVGITRAQKSLNISWCRKRKRAGETESCEPSR 622

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            + +  H+D +   +  ++     E      +    
Sbjct: 623 FIAELPHDDVKHFGMPTSDPAAAKENGRERMAQIRA 658


>gi|330967151|gb|EGH67411.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            actinidiae str. M302091]
          Length = 1230

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 127/1003 (12%), Positives = 270/1003 (26%), Gaps = 155/1003 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +  Q  E          LT     +        +            +  +    
Sbjct: 272  EKLAAWAADQTQEALDLGTGFTRLTPDGVAEAWKSDPPSHPAF--------AAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDGLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDGAL-HGAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEDNDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVESVNHVFTRAEQRPEGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA   A
Sbjct: 485  FLFRDEKGNQVPFADALAQGRKETLEVDGTALTALTVWHLESEQPVSGVVYRQQLASSCA 544

Query: 351  YTISNMIGTDTIFSNGKKRV------IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++        G          ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQSRAGFTAPGKALHGLRPADIAILVRDGKEAQAVRSQLTA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWEQRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +            +++        LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADG----------RAQISLQPTEALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN----------------QRTWYDMV 685
                E  RLLYV +TR+     +           S+                     D+ 
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWLGVADLKRGNANSSMLHRSALGYLLGGGTALPESVDLK 877

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                   E    I L       +               L  +    +             
Sbjct: 878  VWLRDLAEGCNAIALQPVPEPTDDSFSAPRNEASLVKLLVPKRRAAENWWIASYSALRIG 937

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQVI 793
                   +    +P          L+                  +  N G  +H LL+  
Sbjct: 938  DTVTAGADESPDSPQAQKLFDDERLDPEAPRDILVSGGDIHRFPRGPNPGTFLHGLLEWA 997

Query: 794  FT-------LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMTT 839
                         + ++ +   C +          ++ L  +  + L          +  
Sbjct: 998  GNEGFANTARDPIELESAVARRCNRRGWKGWINTLRDWLQQMLNMPLRLSPDSTPVALGD 1057

Query: 840  AMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQISI 873
                + Y  E+     S  +N  + D ++                       G ID    
Sbjct: 1058 LDQPNQYRVEMEFWFASTHVNVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFE 1117

Query: 874  SQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS---------Y 915
             +   ++ +YK++     +  +         +   +  Q  +Y   L            Y
Sbjct: 1118 HEGRYYVADYKSNWLGSDDDAYTDLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYDY 1177

Query: 916  PNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
                   L +++           F  P  +L ++   +    P
Sbjct: 1178 DQHMGGALYLFLRGSRSASQGAYFTRPPRELIESLDLLFQGKP 1220


>gi|171915021|ref|ZP_02930491.1| ATP-dependent DNA helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 665

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/594 (15%), Positives = 189/594 (31%), Gaps = 124/594 (20%)

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA----KYLNAHYEEAKKKNCVLDF 149
             +  +L   ++            K     ++    A      L   Y +  +    +DF
Sbjct: 122 KKILARLMTKEESLDANVALSRISKAKNYGISLGDAAQSLDAALLQLYTDELRALNAMDF 181

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DL++   +LL++ +    +R ++ Q++ + ++DE QDT+ +Q  ++R+L          
Sbjct: 182 DDLLLKAVELLEEHED---VRKQVQQKLRYAMVDEFQDTNTLQMRLLRALVA-------- 230

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
              P  +  VGD+ QSIY + GA+   +   +               +I+L  ++RST  
Sbjct: 231 --KPYNICVVGDDDQSIYGWRGADITNINEFESFFP--------GAKVIKLEENYRSTTP 280

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + +       +  S                 G+  +   +      +        
Sbjct: 281 ILHTANSLIKNNVGRRPKSL-----------WSQNPGSQPVRLVLAEDDKEE-------- 321

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                           A  I                  ++  +  D+ VL R    + ++
Sbjct: 322 ----------------AELICDE----------MLEANRKGDKFDDMAVLFRTNDQSRIL 355

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               R  K    I           D   +KD++A    + + +DD+S + +L +P     
Sbjct: 356 ESEFRKKK----IPYRIVGARSFFDRREVKDILAYLHVMANPDDDVSLLRILNTPTRGIG 411

Query: 450 EDDI-FKICTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSP-- 500
                        +  ++Y  ++  A              + I +I      A       
Sbjct: 412 TSTADLARDHSIAKKTSIYTALKDPAFQALLTQRMQMLVGNFIDFIDLFKAHAAQPMVEL 471

Query: 501 HDFFTLILGAKKGRQQFIS-RFGNEVIDV----LDEFLNFTLRN-EQNSYSSLQELISEL 554
                 ++     R            ++     L           E+++  SLQ+ + E 
Sbjct: 472 APLAEKLIVEVGYRDYLAKLAKTPTDVENWEIGLKMLKQSLTWFDERDNKGSLQDFLDET 531

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                  ++        V ++T+H +KGLE P+V+L      +  HK             
Sbjct: 532 SLNDDREEKDDITKKTGVCLITMHASKGLEFPIVWLPGLEEGILPHKRS----------- 580

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                   +++ T++E  RL YVG+TRA  +L +    
Sbjct: 581 ------------------------IEEGTKDEERRLFYVGITRAMRRLTLSHCR 610


>gi|283782302|ref|YP_003373057.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
 gi|283440755|gb|ADB19197.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
          Length = 669

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 103/593 (17%), Positives = 202/593 (34%), Gaps = 127/593 (21%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           LA      Y++A +    +DF+DL++ T +L K   ++  +R +  ++ +H+L+DE QDT
Sbjct: 165 LAASGYKKYQKALRHAGAVDFDDLLMLTEELFK---IAPQVRQQEARQFDHLLVDEYQDT 221

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q+ +IR+L ++           R +  VGD+ QSIY + GAE K +L+ K       
Sbjct: 222 NGLQYRIIRALADE----------HRNICVVGDDDQSIYGWRGAEVKHILQFKNDWP--- 268

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   ++ L  ++RST+ IL   +K+ +  ++       +      R         V
Sbjct: 269 -----DAKVVRLEWNYRSTSAILETANKLIAYNKHRHDKVLKAARAGGERPRIEQYPSEV 323

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +                                    AR++   I+  +   T       
Sbjct: 324 E-----------------------------------EARQVVADIAFRLKDGTR------ 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                +D  +L R  +    I    R  K    +  V        D   ++DL+A  R I
Sbjct: 343 ---DPRDFAILFRTNEQPRAIETELRKAK----LPYVMLGSQSFFDRKEVRDLLAYLRAI 395

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVY----------------EYIQ 471
            S  D++S + ++ +P     E  +   +       +TV+                E   
Sbjct: 396 ESPRDEVSMLRIINTPPRGIGERSVETVLSEAVRSGKTVWDVVSNLSEGPTLFGDAEKTT 455

Query: 472 KFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEV 525
             ++  ++  +     I       A+  S  +    ++      Q+              
Sbjct: 456 TLSDKNVAAIRSFSNLIQRYSEATARGDSLAELTRKLISETGYEQEVRRIYPDPEEQQMR 515

Query: 526 IDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKG 582
           +  ++E +N     E      S+   + ++      +          N + +MT+H +KG
Sbjct: 516 LAAVEEVVNSVAAYEAEEEKPSISGYLDQVTLGQREMGDDKEKQLARNAIALMTLHASKG 575

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE P V+++     +  H                                    K   + 
Sbjct: 576 LEFPHVYMIGLEDGILPHSRSV--------------------------------KADSQD 603

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
             +E  RL YVG+TRA ++L +          K    T    +++     +  
Sbjct: 604 QIDEERRLCYVGITRAQERLTLSLALTRMKWGKPRDTTPSRFLFEIIGQADNP 656


>gi|254483238|ref|ZP_05096470.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2148]
 gi|214036461|gb|EEB77136.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2148]
          Length = 665

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/623 (14%), Positives = 203/623 (32%), Gaps = 118/623 (18%)

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT--YKMF 120
           E +   L S F        + +I   + ++     ++    Q++    ++        + 
Sbjct: 96  ERKLLGLKSGFSIFDGQDTQTLIKDLLIQEHGSDGDQASTIQNQISNWKNDRVLPEQAVA 155

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +   +  L       Y+ A K    LDF+DLI+    L ++   +     K    I+++
Sbjct: 156 HAKSPAEILCAQAYRRYQRALKAYNALDFDDLILLPTVLFEQNPDT---LEKWQNTIHYL 212

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+  Q+ +++ L                L  VGD+ QSIY++ GA P+ +++ 
Sbjct: 213 LVDEYQDTNSSQYLLVKQLVGVRGA----------LTVVGDDDQSIYAWRGARPENLVQL 262

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           +               +++L  ++RST+ IL   + + +  ++       S         
Sbjct: 263 QDDFP--------GLKLVKLEQNYRSTSRILKAANTLIANNDHVFDKKLWS--------- 305

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                    +  +      +      +  A ++   I       
Sbjct: 306 -------------------------EIGYGDPLRVIRCSD-ENHEAEQVVAEI------- 332

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
               +  ++  +  D  +L R    + LI    +      ++    +          +KD
Sbjct: 333 --LDHKLRKRTRFGDYAILYRGNHQSRLIELALQ----QQQVPYHLSGGTSFFARNEVKD 386

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK-----FA 474
           +MA  R ++++ DD +F+ +   P        +  +      +  ++ + I +       
Sbjct: 387 IMAYLRLLINENDDNAFLRIANVPRRKLGASTLESLGSFANEQHCSLSQAIGRVGSGTLP 446

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-----ISRFGNEVIDVL 529
             G+ + +    ++  +    +          ++   +            +     +  +
Sbjct: 447 EAGLGRLREFRLWMDRIRRQCEGGGGISAIRQMIRDMEYEDWLNQLSSSEQVAERRMSNV 506

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
              ++   +        L + I+ L        +    ++ + V++MT+H +KGLE P V
Sbjct: 507 HFLIDSLNKVMVEEGVELDDAIARLVLRDLLEQQEEEDSSPDNVQLMTMHASKGLEFPHV 566

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F++     +  H                                      ++     E  
Sbjct: 567 FIIGMEENLLPH-----------------------------------RASVEDGNIAEER 591

Query: 649 RLLYVGMTRASDQLIICKHSNTS 671
           RL YVG+TRA   L +   +   
Sbjct: 592 RLAYVGITRAQQTLAMTMAAKRR 614


>gi|311696604|gb|ADP99477.1| exodeoxyribonuclease V, beta subunit [marine bacterium HP15]
          Length = 1234

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 143/960 (14%), Positives = 289/960 (30%), Gaps = 136/960 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             +    L     S     V   +       L K++ L  AS+   + + + LL ++  + 
Sbjct: 241  LEQSQSLKAHPWSQWRDDVIELL-----NDLNKSKRLHGASKNA-MIKVWDLLVAWAESD 294

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKK---------SQDEFIKIRDRFNTYKMFKSTLASL 127
               P+K         ++P+  +K+ K         + D    + D F+  +    +    
Sbjct: 295  DLLPEKIDSAAGFKNQTPEGLDKILKGDDSAPHHPAFDAIGALLD-FSQNQPSAKSDILR 353

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              + ++    E  K+K   + F+DL+   +D L        +   I ++    LIDE QD
Sbjct: 354  HASHWMAERLESEKQKRSEMGFDDLLTRLDDALHGPR-GDQLAATIRRQFPVALIDEFQD 412

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T  +Q+ +   +        +   S   L  +GD KQ+IY F GA+    L+ ++     
Sbjct: 413  TDPVQYRIFDRIYN-----VSGGDSGTCLLMIGDPKQAIYGFRGADIYTYLQARQ----- 462

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSI---PENAQGLSEDSTTTIRHRSSRIGQ 304
                G K     L  +FRS   ++  V++VF                  T       +  
Sbjct: 463  ----GVKERTYTLGKNFRSAKTMVAAVNRVFDHSDQNSRDGAFLFGKGDTSPLPFQGVDA 518

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP---QESSASILARRIAYTISNMIGTDT 361
             GT + W       + +  P    WT          + ++ + +A   A  I+ ++    
Sbjct: 519  NGTKRSWSI-----NGEVQPSLVFWTHESGEEEGVAKGAARADMAETCASEIARLLTLGQ 573

Query: 362  IFSNGKK--------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                G            +  KDI +LV  R +   +      L      SV  +DR  + 
Sbjct: 574  AGQAGFALPDNPSDLEPVAPKDIAILVNNRNEASAVRD---ALGQRRIKSVYLSDRDSVL 630

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
                 ++++   R              L +P    S   + ++ T         E + + 
Sbjct: 631  TSRESQEILCWLRAFAEPRQLAYIRAALATPTLGQSWHAMNQLLTD--------ELVLER 682

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                   +Q   +    L  +  F    +    +L    G ++            + E L
Sbjct: 683  EIERFIGYQQQWQKQGVLPMLRTFLMDFEVPGQLLQRPDGERRLTDIL------HIAELL 736

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRA---HSANHNEVRIMTVHTAKGLESPVVFL 590
                      ++ +      L       +       ++   V+++TVH +KGLE P+VFL
Sbjct: 737  QQDSLQLDGEHALVHHYTQILRAADEEDEHRTLRLESDAGLVKVITVHKSKGLEYPLVFL 796

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                   F  +  K+  +         + ++ P          D +    +    E  R 
Sbjct: 797  PFGT--AFRAQSEKQAFVRYHNEQGRLVTVFDPS--------PDDVARADRERLGEDIRK 846

Query: 651  LYVGMTRASDQLIICKHSNTSNE--------KKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             YV +TRA     +   +  + +            Q    D +         ++   L +
Sbjct: 847  FYVALTRARFATWVGTAALDNWQQSGLGYLIGSEGQSRISDCLGKLAEGRAEIRITPLPD 906

Query: 703  SIN-KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
              +      A E       ++   RE+         +      + I            + 
Sbjct: 907  PDDTHYHGPAPEALGPAMVSSREAREDWWIASYSSIEYTGMTGTGIAFTGEVEDAQTQNL 966

Query: 762  IDTKGKTNLESLLS---------DNQTFNRGLIIHKLLQV--------IFTLPEHKRKNF 804
            ++       E+              +    G  +H+LL+         +   P    +  
Sbjct: 967  LEESTLDEEENPAQMANQRNQHNFPKGAGPGTFLHELLEWCTQQGFQRVVDNPPLLHEQL 1026

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLE-----------------NPMMTTAMSCD--- 844
                 T+    W     + LL  I++ L                   P +          
Sbjct: 1027 TRRCGTRGWNEWVEPLVRWLLALISKPLSLDRAGAETVCLSDLTTLRPELEFWFESRNVS 1086

Query: 845  --SYSEVSVSGKINCPKKDII--------ISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
                 E+  +  +N   +  +        + G ID +       ++ +YK++        
Sbjct: 1087 IRKLDELVTAHTLNRADRPRVEETRFNGMLKGFIDLVFEHNGRYYVLDYKSNTLGEDNSA 1146


>gi|104784309|ref|YP_610807.1| ATP-dependent DNA helicase [Pseudomonas entomophila L48]
 gi|95113296|emb|CAK18024.1| ATP-dependent DNA helicase [Pseudomonas entomophila L48]
          Length = 669

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 97/634 (15%), Positives = 208/634 (32%), Gaps = 125/634 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  +        A  +  HY+   K    +DF
Sbjct: 129 DDGIDEIKNMIGAWKNDLILPSEALEKARNPRE-----QTAAIVYTHYQRTLKAFNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  +    + ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILQPVKLFQEHPE---VLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGM------- 233

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                    VGD+ QSIY++ GA P+ ++  K               I+ L  ++RST+ 
Sbjct: 234 ---RNQFTVVGDDDQSIYAWRGARPENLMLLKEDYP--------SLKIVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + +   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLIANNPHAFEK---------------------QLWSEMGVGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCKNEEAEAERVAMEILTLH---------LRTNRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +++ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y   ++             + Q    ++  + H      P  
Sbjct: 415 STTLEKLGNYSTERGISMYAASEEMGLGEHLDARYTERLQRFKHWLDGVRHKVALDDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++           +  ++      I  +   +      L  ++    ++++ I +L
Sbjct: 475 ALHEMIRDIDYENWIRQQTASDKAAEFRISNVWFLVEALKNTLEKDEEGDMTIEDAIGKL 534

Query: 555 EQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                   ++    N   V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            +    T    + +   +D   + +       K 
Sbjct: 620 GEIIDCTPSRFLDELPPDDLAWEGLDDAPVEVKA 653


>gi|220933272|ref|YP_002512171.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994582|gb|ACL71184.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7]
          Length = 721

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 100/581 (17%), Positives = 188/581 (32%), Gaps = 117/581 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + + YE A K+  V+DF          L+    +  +         HIL+DE QDT+ I
Sbjct: 172 RIYSAYEAACKRAGVVDFA---ELLLRALELLRDTPALLEHYRARFRHILVDEFQDTNAI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L            S   +FAVGD+ QSIY + GA  + +    R         
Sbjct: 229 QYGWLRLLAG----------SRIPVFAVGDDDQSIYGWRGARIEHIQHFSRDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + L  ++RST +IL   + +    +   G +                       
Sbjct: 273 --GTRTVRLEQNYRSTGNILRAANALIEHNDGRLGKNLW--------------------- 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                           +  + F+   +       AR +A  I                  
Sbjct: 310 -------TEDSEGAPIALYAAFNEQDE-------ARFVAGRIEEWQREGH---------- 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  ++ +L R    + +            +I           +   IKD +A  R + S+
Sbjct: 346 RHSEVAILYRSNAQSRVFEEAL----IQARIPYRVYGGLRFFERAEIKDALAYLRLVASR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN------CGISKFQHV 484
           EDD +F  ++  P     E  + +I    R   ++++                 +  +  
Sbjct: 402 EDDAAFERVVNQPARGLGERTLAQIRDLARERDQSLWSASAHLLETGGLTARAGNALRGF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL--RN 539
           +  +  L    +    H+    ++     R  + +  G +     + LDE ++       
Sbjct: 462 LALVDGLAEACRDLPLHEQAEHVIQHSGLRDFYAAEKGEKAQARVENLDELVSAARGFSF 521

Query: 540 EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +  ++  +  L + L        +   SA  + V++MT+H+AKGLE P+VF+      +F
Sbjct: 522 DPETHGDMDTLTAFLAHAALESGEGEASAFEDCVQLMTLHSAKGLEFPLVFMAGMEEGLF 581

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+   +                                       EE  RL YVG+TRA
Sbjct: 582 PHRMSVEEPG----------------------------------RMEEERRLAYVGITRA 607

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             QL++C   +     +         + +         + +
Sbjct: 608 RRQLVLCYAESRRLHGRETYNAPSRFLAELPAELIEDIRPR 648


>gi|269127955|ref|YP_003301325.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268312913|gb|ACY99287.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 1059

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 131/964 (13%), Positives = 278/964 (28%), Gaps = 134/964 (13%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           S +   +    +           ++L+   G    L +   +++  +   +      L  
Sbjct: 75  SRKAAEELRHRITGRLRRTTRAPLALTF-HGYAHALLRRDAIRRGQEPPRLLSAPEQLLE 133

Query: 72  FFLTQKFT--------PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
                +          P++          + +L++ + ++ +       +      +   
Sbjct: 134 VRRLLEGEAADGAVHWPRRLHEALTTRGFAEELRDFMLRAAER--GYGPQELEELGYLKG 191

Query: 124 LASLTLAKYLNAHYEEAKKKNCVL--DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                        YE+    + VL  D+ DLI               +R++     + + 
Sbjct: 192 RDDWVAIGRFMNRYEQRFAVDPVLTYDYTDLIEAAAA----LLAEEEVRFQERAAYDAVF 247

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT   Q  +++ L  D           R L  VGD  QSIY F GA+ + ++   
Sbjct: 248 VDEYQDTDPAQEHLLKHLAGD----------GRDLVVVGDPDQSIYGFRGADVRGIMDFP 297

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                  T  G+   ++ L    R +  IL                   +      R  +
Sbjct: 298 HRFP---TADGRPAPVVALRECRRMSPAILEAS----RRIARRLPAGPSAAEHRALRPRQ 350

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             + G V +        +                          A  +A  +        
Sbjct: 351 GAEDGEVHVVIADSPGQE--------------------------AALVADELRR------ 378

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    +    + VLVR       +  L R L       VV  D   L    A++  
Sbjct: 379 ---AHLLEGVPWSRMAVLVRS--AVRQVPPLRRALAQAGVPVVVAGDELPLMGEPAVRPF 433

Query: 422 MALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           + L R  L +      V   +L  PL       + ++     E ET+    +      ++
Sbjct: 434 LMLLRAALEKGYLTGEVAEELLTGPLGGADALTLRRLKRALREVETLSGGDRPVGELLVA 493

Query: 480 KFQHVIKYI--------------HELIHIAQFCSPHDFFTLILGAKKGRQQFISR----- 520
             +   + +              H L    Q  +  +    +  A      ++ +     
Sbjct: 494 ALEDPRELLLVHPKVRAPAERVAHLLQVARQGGTAEEVLWNVWQASGLADAWLEQSAKGG 553

Query: 521 ----FGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVR 573
                 +  +D +        R  ++   +  +  ++E+  E+         +     VR
Sbjct: 554 ARGAAADRDLDAVVVLFERAARFTDRMPQAGPELFVAEISGEEIAGDTIADQAPEGEAVR 613

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           I+T H AKGLE  VV +      V+    ++   +      +      +    +     +
Sbjct: 614 ILTAHRAKGLEWEVVIVAGVQEGVWPDLRLRGSLLGVEELIEHHAGSDLADLLAEGGRGT 673

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN--QRTWYDMVYDSFHN 691
                +     +E  RL YV +TRA  +L++        E++ +           +    
Sbjct: 674 AAGASMAAKLLDEERRLFYVAVTRARRRLVVTAVGGDDTEERPSRFLNELAPGALERSEL 733

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI--------KQLMDEQKIPKKL 743
           DE+ + + L   +     +  + S   P                           I    
Sbjct: 734 DEKTRWLSLPALVADLRAVVTDPSRPQPLRRAAAAHLARLARAGVRGAHPDSWYAITALS 793

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN---------RGLIIHKLLQV-- 792
                   +E   ++PS ++T     L  LL+                G ++H + ++  
Sbjct: 794 DPRPAFTADEQITISPSQVETFTTCGLRWLLASAVGARDGGPDELATMGKVVHAVAELAG 853

Query: 793 ----IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
               +      +R + I       +  +  K+ +     + + L           +    
Sbjct: 854 SHGDLAEEDVAQRLDEIWKELNFGSSWYSGKQREQAAKMVDKFL------AWHRANPNEL 907

Query: 849 VSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           V++          ++I GRID+    +     + + KT      + E        QL +Y
Sbjct: 908 VALEEDFQVELGRVVIRGRIDRAERDEHGRAVVVDIKTSAQKVPDKELAR---HPQLGVY 964

Query: 908 EKIL 911
           +  +
Sbjct: 965 QYAV 968


>gi|187931893|ref|YP_001891878.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712802|gb|ACD31099.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 671

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 101/617 (16%), Positives = 190/617 (30%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 138 QAKISFWKSALLTPDQVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 198 ---SNIQKLWADKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 297 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 321

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 322 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++  DD +F+ ++ +P        + K+     + 
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNPYDDRAFLRVINTPKREVGSATVHKLGEYASQH 428

Query: 464 ETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +        +  +            I           S  +        +     
Sbjct: 429 HCSFFHTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 634 IDELPETDLYWVGTEKE 650


>gi|329914689|ref|ZP_08276145.1| ATP-dependent DNA helicase Rep [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545085|gb|EGF30383.1| ATP-dependent DNA helicase Rep [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 692

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 112/732 (15%), Positives = 212/732 (28%), Gaps = 134/732 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            L + E    + K         VS  +      +         +   L+        ++ 
Sbjct: 76  ALEMQERIAKLLKQPRQAKQLTVSTFHSLGVKIL-----RQEARQLGLKDRFSIMDSDDC 130

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           FSL+    +T      +      I       K  L        +  D             
Sbjct: 131 FSLVQDLAITTDKQLIRR-----IQGAMSLWKNSLTDPDTAIKQAIDDEEAD-------- 177

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               A  +   Y         +DF+DLI    +L +  +    +R K  + + ++L+DE 
Sbjct: 178 ----AARIYRSYVATLSAYQAVDFDDLIRLPVELFRSNEA---VRDKWQRRLRYLLVDEY 230

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+++ +                  AVGD+ Q+IY++ GA  + +   +    
Sbjct: 231 QDTNTCQYELVKLMVTGI-------GKKPLFTAVGDDDQAIYAWRGATIENLKTLQVDFP 283

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      +I+L  ++RS+  IL+  + V S        S  S   +          
Sbjct: 284 --------DLKVIKLEQNYRSSTRILSAANAVISNNPKLFDKSLWSEHGL---------- 325

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                    +  D   +    +I+                + ++
Sbjct: 326 ------------------GDPVKVMAMEDDEIEADQVAIM----------------LSAH 351

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             +R     D  +L R      ++    R      +I    +      D   IKD+++  
Sbjct: 352 RFERRANFSDYAILYRGNHQARVLEKALR----RERIPYTMSGGQSYFDRAEIKDIISYL 407

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEY------IQKFANCGI 478
           R I +  DD +F+  + +P     +  +  + T   + + +++E         K     I
Sbjct: 408 RLIANGSDDPAFIRAVTTPKRGVGQSTLEVLGTFAGQWQCSLFEAVFKGGLEAKLPERQI 467

Query: 479 SKFQHVIKYIHELIHIAQFCS------PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
              +    +I +L   A            D    I         F  R      + + +F
Sbjct: 468 KPLREFGNFIKQLEERADGSGEDAAEVLDDMMKAINYEYYLYDNFDDRQAQSKWENVVDF 527

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVV 588
             +                S LE                  + VR+ T+H +KGLE P V
Sbjct: 528 TGWLKEKCTGGKDGEAPEKSLLELTQMVALMTMLEGKDEEPDAVRMSTLHASKGLEFPHV 587

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FL+     +  HK                                        +  +E  
Sbjct: 588 FLIGVEEGILPHKGDPDAPFETLG-----------------------------ARIQEER 618

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           RL+YVG+TRA   L +         ++S        + +   ++      +      KD 
Sbjct: 619 RLMYVGITRAQRTLHVSWCKRRKRARESVNCEMSRFIPEMKLDEGEAVPTEAEIITPKDR 678

Query: 709 WIAYEWSTHHPE 720
               +     P 
Sbjct: 679 MAMLKELLQKPR 690


>gi|332039001|gb|EGI75430.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624]
          Length = 714

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 106/606 (17%), Positives = 194/606 (32%), Gaps = 112/606 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A YEE       +DF+DLI     LL++      +R K  Q + HIL+DE QD
Sbjct: 159 RITAKIMARYEERLTAYQSVDFDDLIGLPLKLLREHPE---VRAKWQQMMGHILVDEYQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ LT D               AVGD+ QSIY + GA    + +        
Sbjct: 216 TNATQYELLKLLTSD-------DPQRAHFTAVGDDDQSIYGWRGATLDNLKKLPIDFPN- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++RST+ IL   + V          +                   
Sbjct: 268 -------LRIIKLEQNYRSTSAILQAANNVIGPNPKLFPKT------------------- 301

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW ++      +                   +    A R+   I ++           
Sbjct: 302 --LWSELGEGEPVRVVDA--------------DNEEHEAERMVARIQSLRENSQHKE--- 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 KD  VL R    + ++    R       I    +      D   I+DL A  R 
Sbjct: 343 -----FKDFAVLYRANHQSRILEQALR----KANIPYKVSGGISFFDRAEIRDLCAWLRL 393

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQK------FANCGISK 480
            ++ +DD +F+  + +P        +  + T   +   +++E +          +  +  
Sbjct: 394 WVNNDDDPAFLRAITTPKRGIGHQTLQALGTFSGKYKVSLFEALFSSSLPSVLNSRAVDS 453

Query: 481 FQHVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDE 531
                +Y+++L + A+     +    F    L      +       +E         + +
Sbjct: 454 LHEFGRYVNDLEYRARHTEGKEAALAFLLEWLKDIGYEKFLYDSEEHEKAAQSRWTNVLD 513

Query: 532 FLNFTL----------------RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           F ++                   N  +   SL ++   +             + N V + 
Sbjct: 514 FCDWMAGRCGGEIEDENGANFGNNFASEKKSLLDVAQTVSLIS--TLSERQQDQNLVTLS 571

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE P V L+     +   K                       S+  +     +
Sbjct: 572 TLHAAKGLEWPHVMLIGVCEGLLPFK-------------LDDGADSAGGSQREHEASDAV 618

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +        +E  RL+YVG+TRA   L +         ++         + +   +   V
Sbjct: 619 MGAAIAERLQEERRLMYVGITRAQRTLAVSWPKRRKKGREMIAAQPSRFIAEMALSQATV 678

Query: 696 KKIKLT 701
           K+    
Sbjct: 679 KEDPRE 684


>gi|167035662|ref|YP_001670893.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida GB-1]
 gi|166862150|gb|ABZ00558.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida GB-1]
          Length = 1224

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 141/1038 (13%), Positives = 294/1038 (28%), Gaps = 157/1038 (15%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
             E    +                  ++     G      +A+  +      C       L
Sbjct: 226  GEQLARLKAPWAQWAEQLRQICRDALAAKQVDGRKM---QARYFEPWFDKLCAWAGDEQL 282

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                L   FT        E  K  P     L   Q    +++   +              
Sbjct: 283  VDLDLGTGFTRLTPAGMAEAWKGEPPEHPGLNAMQSLQQQLQALDSPDAPL-----LEHA 337

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A +++A +E  K++   + F+D+++     L   +    +   I ++    LIDE QDT 
Sbjct: 338  ASWVSARFEVEKRRRAEMGFDDMLVRLQHALA-SEAGERLAGLIREQFPVALIDEFQDTD 396

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +Q+ +   + +      + + +   LF +GD KQ+IY+F GA+    L  +R  + R  
Sbjct: 397  PVQYGIFERIYQ-----ISENRADTGLFMIGDPKQAIYAFRGADIYTYLAARRATRDRLH 451

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG------LSEDSTTTIRHRSSRIG 303
                      L  ++RS+  ++  V++VF   E  +               +     R  
Sbjct: 452  ---------SLDTNYRSSKAMVAAVNQVFLQAEVRETGRGAFLFRAADDNPLPFIEVRAK 502

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-- 361
              G   L +   S        + E      +++        LA   A  I  ++      
Sbjct: 503  GRGEQLLIDGETSAALQCWQLESE------EAVSSSVYRQQLAASCASHIVALLNGGQQG 556

Query: 362  ----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                  + G+ R     DI +LVR   +  ++             SV  +D+  +     
Sbjct: 557  TAGFQNAEGELRPCLPSDIAILVRDGHEAQVVRAELAARDVR---SVYLSDKDSVFAAQE 613

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
              DL+A  +     + +      L S     S   + ++           E + +     
Sbjct: 614  AHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDQLNQD--------ERVWEGWVMR 665

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
               ++   +    L  +            ++    G +   +         L E L    
Sbjct: 666  FRHYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLL------HLAELLQQAA 719

Query: 538  RNEQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                   + ++ L   L    Q          ++   V+++T+H +KGLE P+V+L    
Sbjct: 720  GELDGEQALIRHLAEHLANSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFIC 779

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            +          +    S  +                   + I+        E  RLLYV 
Sbjct: 780  TSKPVDGSRLPLAWHDSEGNAHLTLTPD----------QEQIERADDERLAEDLRLLYVA 829

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWY-------------------DMVYDSFHNDERV 695
            +TRA     +         +KS+Q                       D +         +
Sbjct: 830  LTRAQHACWLGVADLKRGNQKSSQLHRSALGYLLGGGLALTGSQQLTDWLQALASTCPHI 889

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                L  +  +   + +      P   P         +     +     +   +      
Sbjct: 890  TCPGLPQANEQAYRVPHAERELLPARKPRRAAAEHWWIASYSALRVGDQTLGADSSQAQQ 949

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNR----GLIIHKLLQVIFTL--------PEHKRKN 803
            +L+   +D +    + +   D   F R    G  +H LL+             P+   + 
Sbjct: 950  LLDDEAVDAQVLREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFSQVSGNPQLIERT 1009

Query: 804  FITSYCTKNAKLWPA---KEYKNLLLSITRL---------------------------LE 833
                   ++   W     +  + LL     L                           ++
Sbjct: 1010 VGQRCNRRDWTGWIPTLSQWMQRLLGEALPLPGSDQSVMLGQLHHYQIEMEFWFASHQVD 1069

Query: 834  NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ-- 891
               +   ++  ++  ++            +  G ID         ++ +YK++   P   
Sbjct: 1070 AEQLDRLVARHTHPGLARPAAQPTVLNG-MFKGFIDLAFELDGRYYVTDYKSNWLGPDIQ 1128

Query: 892  -------EIEHIPYTHIAQLSIYEKILKDSYP--------NKSLVCLL-IYVSE------ 929
                   E   I + +  Q  +Y   L             ++ +   L I++        
Sbjct: 1129 AYDTQTMEKAIIEHRYDLQYVLYLLALHRQLRARLPDYDYDRHVGGALFIFLRGASSSGH 1188

Query: 930  PKVFIIPQNKLNKAFAEI 947
                  P  +L ++   +
Sbjct: 1189 GVYHAKPPRELIESLDAL 1206


>gi|299140513|ref|ZP_07033651.1| UvrD/REP helicase domain-containing protein [Prevotella oris C735]
 gi|298577479|gb|EFI49347.1| UvrD/REP helicase domain-containing protein [Prevotella oris C735]
          Length = 1075

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 128/871 (14%), Positives = 277/871 (31%), Gaps = 94/871 (10%)

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAK 131
             P K II ++ +   P       +     ++             +          L L  
Sbjct: 285  DPAKWIIKKKAHAGEPIYDLVCDQLMPMLVQSERIRRQQCRLYKSADLTLRHLNQLRLLD 344

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDT 188
             +    EE  ++        ++ +T  LL+     + S +I  KI  ++ +I+IDE QDT
Sbjct: 345  SIGDKVEELNRELNRF----MLSDTQTLLRSMIGENDSPFIFEKIGTQLRNIMIDEFQDT 400

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S +QWE  + L  +     + +        VGD KQSIY +   + + +   +       
Sbjct: 401  STVQWENFKVLLLETMSHDSNN------LIVGDVKQSIYRWRSGDWRLLNDIENEFGA-- 452

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                Q+ +I  L ++ RS  +I+T  +  F      + L             +      +
Sbjct: 453  ----QEINIKPLKINRRSEKNIITFNNAFFKKAARQEYLQLKEEAENNAEQLQKAYEDVI 508

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            Q       +  +                  ++      + +A  +  +I           
Sbjct: 509  QDIPAEKKECGTVEVELL---------PNDDAYEEQTFKLVADKVQTLIDAG-------- 551

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              ++  DI +LVR       I      ++N   + +V  + F L    A+  +++    +
Sbjct: 552  --VKENDIAILVRYNATIQEIGDYF--MRNMPDVHLVSEEAFHLDASQAVNIIISGMMVL 607

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             + EDD++   + K  + +  ++ +           ++ +Y+ K           +    
Sbjct: 608  NNPEDDIAKATLTKLYMKSIKDNSLLDSDILLKNN-SLEDYLPKLFLNQREYLLGL---- 662

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              LI +A+          + G                   +  F +      Q+    L 
Sbjct: 663  -SLIDMAEALYHIFDLQTLTGQTAY---------------ICTFYDKLNEFMQDGVPDLH 706

Query: 549  ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              + +            S+++  V ++T+H +KGLE   V +     ++     I     
Sbjct: 707  SFLEQW-TDNIHSSSIQSSSNEGVSLVTIHKSKGLEFDHVIVPFCDWKLEKSNTIWCKPQ 765

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                +  P +PI   + + +N+I  +           +   LLYV  TRAS  L I    
Sbjct: 766  EEPFSALPIVPIDFNKKQMKNSIYENDYADEHFQNIVDNLNLLYVAFTRASRGLYIYGKR 825

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                  +S       ++ +              ++ NK+E I +             +++
Sbjct: 826  GDKGGGRS------WIIENCLQAVATDLNAHYEDTGNKEESIHFALGEGLSIAPNKTKKQ 879

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
            +        +  +      +  +              G    E  L        G I+H 
Sbjct: 880  SENIFNQSAENIEITVENYERKVQFKQSNKSKDFVNAGMEKNEETLKKKSYIQLGSIMHA 939

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD--SY 846
            +   I    +      + +   +            L  +I   L +P +++  S     +
Sbjct: 940  IFSTI--KSKKDIGTALRNLEEEGILYNKVITQDKLRKTIAERLNDPRVSSWFSERWSLF 997

Query: 847  SEVSV--SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
            +E S+     +    ++     R D++    + + + +YK               H AQ+
Sbjct: 998  NECSILKVNPLTDKVEER----RPDRVMTDGKEMIVVDYKFGSP--------KEEHKAQV 1045

Query: 905  SIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              Y  +L +   + ++   L Y+   K+  +
Sbjct: 1046 KEYMNLLHEM-GHHNITGYLWYLFSNKIIKL 1075


>gi|269836802|ref|YP_003319030.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
 gi|269786065|gb|ACZ38208.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745]
          Length = 738

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 104/601 (17%), Positives = 181/601 (30%), Gaps = 123/601 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y+E  ++N  LDF+DL++ T  L    D    +  +      +IL+DE QD
Sbjct: 176 EIVSRVYPRYQEILRRNRALDFDDLLVETVRLF---DEQPDVLRRYQDWYRYILVDEYQD 232

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+ ++ +L              R L  VGD  QSIY +  A+ + +L  KR     
Sbjct: 233 TNHVQYLLVHALAA----------GHRNLCVVGDPDQSIYGWRQADIRNILEFKRDFPDA 282

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
           A         + L L++RST  I+   D+V             +      R         
Sbjct: 283 AE--------VHLELNYRSTGVIVEAADQVIRANTQRIRRQLRTENPRGDRLV------- 327

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                       + +    +  A+ +   I  ++ +        
Sbjct: 328 ----------------------------VREAYDETQEAQFVVGEIRRLVQSGR------ 353

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + +DI VL R    +  +            I           +   IKD +AL R 
Sbjct: 354 ---YRYRDIAVLYRTNAQSRPLEDTL----IRADIPYQLVGGTRFYERREIKDALALLRL 406

Query: 428 ILSQEDDLSFVCML-KSPLF-NFSEDDIFKICTQRHETETVYEYIQKFANCGISK----- 480
           I +  D +S   +L  +PL        + ++     ET                      
Sbjct: 407 IANPRDAVSLQRVLANTPLGKGIGARTLQELERWSSETGLPVYTGLAALAGESGAPAPPV 466

Query: 481 -------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLD 530
                     V + I  L   ++       F   +       QF         E  + + 
Sbjct: 467 GTRPARLLADVYRTIAGLEVKSRSMPLSALFDAAVEQTGFAAQFQEGGDPEALERWENVL 526

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVF 589
           +  N  +  +       + L   LE+            + ++V ++T+H AKGLE PVVF
Sbjct: 527 QLRNVLMTYD--ELPESEALEIFLEESALIADADTIDESGDQVTLITLHAAKGLEFPVVF 584

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           LV     +  H                                        ++  EE  R
Sbjct: 585 LVGAEEGILPH----------------------------------ARSMESEAQVEEERR 610

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA ++L I      +   + +       V            ++          
Sbjct: 611 LFYVGITRAKERLYITHTFRRTVWGRDDVSIRSRFVDAIPPELIETTALRTATPRPSTRP 670

Query: 710 I 710
            
Sbjct: 671 T 671


>gi|148378683|ref|YP_001253224.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|148288167|emb|CAL82235.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
          Length = 884

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 120/725 (16%), Positives = 220/725 (30%), Gaps = 123/725 (16%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++ KK    LDF DLII T  +L+       +R K  Q++ +I++DE QD ++ Q+ ++
Sbjct: 186 YQQ-KKNYN-LDFNDLIIFTLHILETFP---KVRKKWQQKLEYIMVDEFQDVNIKQYRLV 240

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L+E            + LF VGD  Q++YS+ GA    +L   +          +   
Sbjct: 241 SILSEY----------HKNLFVVGDPDQTVYSWRGANVNLILNFDKEF--------KGTK 282

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I +  ++RS+++I+   + + S  +                                  
Sbjct: 283 TIMMNQNYRSSSNIIKASNSLISKNKQR-------------------------------- 310

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
             D +  P +           +       A  I   I  +I                K+I
Sbjct: 311 -IDKELIPIKHGNIPVVYKHSENIYKE--ANWIINQIEQIIKGGN----------SYKNI 357

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R    +  I           KI               IKD+++  R ++  EDDLS
Sbjct: 358 AILYRAHYVSRSIEEAL----LKNKIPYTLYSGVEFYQRKEIKDILSYLRMVV-FEDDLS 412

Query: 437 FVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY---IQKFANCGISKFQHVIKYIHELI 492
           F+ ++  P  NF +  +  I         ++Y       +      SK    +  I    
Sbjct: 413 FIRIINEPKRNFGKKRMEIIRKYAEDNNCSLYSSLKINLEDKLIAKSKADKFVDLIERYK 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            I +     D    +L              +E ++ L E  N     E ++      L  
Sbjct: 473 KIYKEMRITDLLMELLNNSGYEAMLRESGEDERLENLAELKNSISDYENSAGED-TTLED 531

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            L++           N + + +MT+HTAKGLE P VF+ +    +F              
Sbjct: 532 YLQEISLFTNSDLKENKDTINMMTLHTAKGLEFPYVFICEFNEGIFPSARTNT------- 584

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                       K   EE  RL YVG TRA + L +      + 
Sbjct: 585 ----------------------------KEKMEEERRLAYVGYTRAKNALFLSDAEGVNY 616

Query: 673 EKKSNQRTWY------DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
           +      + +        +       E +         + +  +    +        +  
Sbjct: 617 DGSYRFPSRFIFNTGKTYLNYLVELKESLIDDANEFISDSENSMNKSNNIKFKIGERIIH 676

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
           +     ++         +    ++      ++ ST   K  TN   ++  N+        
Sbjct: 677 KLLGLGVIIGIDNDNSSYMIKFDNAETFRNISFSTQLDKADTNNLDIIKSNERKAID--- 733

Query: 787 HKLLQVI-FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
           H   + +     E +R         +  +     E           LE   +        
Sbjct: 734 HLEAERLEAERKEQERLEAERLEAERKEQERLEAERLEAERKEQERLEAERLEAERKEQE 793

Query: 846 YSEVS 850
             E  
Sbjct: 794 RLEAE 798


>gi|260902656|ref|ZP_05911051.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ4037]
 gi|308109679|gb|EFO47219.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ4037]
          Length = 671

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 222/660 (33%), Gaps = 125/660 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     LK+ L    +    +        M K       L  +   
Sbjct: 112 DQMALLKELTEKQLDGDKDLLKQLLSSISNWKNDMLTPEQAKAMAKGEQQ--QLFAFCFE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI+    LL+  +    +R +    I ++L+DE QDT+  Q+E+
Sbjct: 170 MYQKQMKAYNALDFDDLILLPVLLLRNNED---VRQRWQNRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +  +             L  VGD+ QSIYS+ GA+P+ ++   +             
Sbjct: 227 VKLIVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGQDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + ++       +           A R+         T  + ++      + +D
Sbjct: 308 -------DGEKLKVLLAKN-------EEHEAERV---------TGELIAHKFLNRTEYRD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----MQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +   +++
Sbjct: 401 AFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFEASFEMGLEQHLSGRGLENLRRFTQWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLR----- 538
             +   A+  +  +    ++                +     +  + +  ++ +      
Sbjct: 461 VAIADQAERGNTVEAVRSLVRDIHYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 -NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +Q    +L+E++  L       +     + + V++MT+H +KGLE P V+L+ +   +
Sbjct: 521 NYDQEE-KTLKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHASKGLEFPYVYLIGSEEGI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H+                                       +   EE  RL+YVG+TR
Sbjct: 580 LPHQTSID-----------------------------------EDNVEEERRLMYVGITR 604

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L            +  + T    + +   +D   +  K   S  +          +
Sbjct: 605 AQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEVNKKPVSQEERMAKGQAHIAN 664


>gi|300702548|ref|YP_003744148.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
 gi|299070209|emb|CBJ41500.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957]
          Length = 705

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 104/627 (16%), Positives = 189/627 (30%), Gaps = 130/627 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L    +    +R K    + + L+DE QDT+
Sbjct: 178 AALVYRNYVATLHAYQAVDFDDLIRIPAELFANNEA---VRLKWQNRLRYFLVDEYQDTN 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L         +H       AVGD+ Q+IY + GA    +   +        
Sbjct: 235 ACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNLKLLQTDFP---- 284

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +        +  S                  
Sbjct: 285 ----SLKVIKLEQNYRSTVRILNAANAVIAQNPKLFEKTLWS------------------ 322

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 323 -----------------EHGMGDAINVSGANDEEHEAESVVFK---------LSAHKFER 356

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      L   + R      +I  V +      D   IKDL A  R I 
Sbjct: 357 RAQFRDYAILYRGNFQARLFEQILR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 412

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E         K A   +   +
Sbjct: 413 NADDDPAFIRAVTTPKRGVGNTTLEVLGAFAGQAKVSLFEAAMMGGIEAKLAPRQLEPLR 472

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLR 538
              ++I  L   A           ++G              R        + EFL++  R
Sbjct: 473 VFCEFIVRLSDRAAREPASTLLDEMMGGIHYEAYLYDTYDERQAQNKWTNVLEFLDWLKR 532

Query: 539 ---------------NEQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                           +          +L EL   +        +    + + VR+ T+H
Sbjct: 533 KGTKPENLEAEEATGYDNADGLMDTGKNLLELTQTIALISMLEGKED--DPDAVRLSTLH 590

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H                                      
Sbjct: 591 ASKGLEYPHVFLVGVEEGILPHCREDDDLT------------------------------ 620

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 EE  RL+YVG+TRA   L I         +++        + +   +D   +  
Sbjct: 621 --DEKIEEERRLMYVGITRAQRSLHITWCKKRKRARETVVCEPSRFIAEMKLDDGAGQTP 678

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLE 725
           + T      +              P  
Sbjct: 679 EDTMPAMSPKDRLGALKGLLAAKKPAA 705


>gi|294141179|ref|YP_003557157.1| exodeoxyribonuclease V subunit beta [Shewanella violacea DSS12]
 gi|293327648|dbj|BAJ02379.1| exodeoxyribonuclease V, beta subunit [Shewanella violacea DSS12]
          Length = 1230

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 147/1041 (14%), Positives = 312/1041 (29%), Gaps = 170/1041 (16%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             K +WP     +  +   + L          KK     + +      + +   S      
Sbjct: 231  LKLIWPREREAIETLLHSLPL----NGVRFGKKPDAYPKLAIMLDAMDNWCKCSMSLPPM 286

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
            K     ++   ++NK      E     Q   +   +R                   ++  
Sbjct: 287  KVMESLSLSGLKLNKGG----EVPTPDQAPVLDHIERLCLLIKDFIPSFLYCARDGISKR 342

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + + K +  ++  +DL++     L+       + S  +   I +     LIDE QDT  +
Sbjct: 343  FAQQKSERNLMTPDDLLLTLEQALRPDTGDINEHSNNLANLIAKRFPVALIDEFQDTDPL 402

Query: 192  QWEVIRSLTEDFFVGKNTHS----------------------SPRTLFAVGDEKQSIYSF 229
            Q+ +   + +        H+                         +L  +GD KQ+IY+F
Sbjct: 403  QFAIFNRIYQQESTSSTGHNADISAEDDSDNSGENNQSKPASKEVSLLMIGDPKQAIYAF 462

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA+    ++ +   +              L  ++RS+ +++  V+ +F   ++      
Sbjct: 463  RGADIHTYIQAREQTE----------QHYSLGTNYRSSRNMVLSVNALFENRDDPFINQA 512

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                +++       +         V   +D+     +         L + S+   LA   
Sbjct: 513  IVFESVQPSPFAHKK-------IFVEQNNDTSALKIKLLSEDPDKGLNKASARKRLAEDA 565

Query: 350  AYTISNMI-GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            A  I+ ++  +         + ++A+DI VLVR R +      + R   +  +I  V   
Sbjct: 566  AAEITRLLTESQQGQCTISGKALKAQDIAVLVRDRNEAG----VIRESLSQRQIGSVFLS 621

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            R  +   L  ++L  +   + + +D+ +    L + L  ++   I          + + E
Sbjct: 622  RDSVFKTLEARELALVLHALATPKDERALRSALATSLLGYNALAIHGFNQDEMIRQDLLE 681

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
               +     + +       +  L+ +A           +L  + G ++            
Sbjct: 682  QFDRLHQNWLRR-----GIMPALLSLANET---QLIERLLQGEDGERRLTD------FRH 727

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQ------YPPTIKRAHSANHNEVRIMTVHTAKG 582
            L E L      +      +  L++  EQ           +   ++  N V+I+T+H +KG
Sbjct: 728  LAELLQQ----KATELDGISALVNWYEQALIVNNANEEAQLRLASEQNLVKIVTIHKSKG 783

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PV F+              +    P L  D    IW  +            +  K+ 
Sbjct: 784  LEYPVCFIPFVSLA-----RDNRRKPAPMLYHDNNRLIWDIEQTDEG------WERHKRE 832

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD-----MVYDSFHNDERVKK 697
               E  RLLYV MTR   Q  +   +++   KK+   +         +           +
Sbjct: 833  NLAEDLRLLYVAMTRPVYQCYLYIANHSRFTKKAGITSQLHETGIGYLLGIEDKACDFAR 892

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK--------- 748
            I+        + I+            L      ++ +  +K+ +KL++P +         
Sbjct: 893  IQTQAQGLICDAISVSEVQADVSTQALVSVTDKRRTLAPRKLKRKLYTPWRVGSYSGLVK 952

Query: 749  -------NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHK 800
                       +        I            +  +  N G  +H +L++I   L E +
Sbjct: 953  DLPHERVAPGADDESFPELEIIQDVVDPSPCRFTFERGANAGSFMHLVLELIDFTLAEAQ 1012

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSVSG 853
                +     K         +  L      +L  P+       ++         E+    
Sbjct: 1013 LPEQLPVAMEKYG--IDESWFSILNTWYLDILNAPLTQDGSLTLSQLTPSQKLVEMEFYL 1070

Query: 854  KIN---------------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ- 891
             I+                           ++ G ID     +   +I +YK++H     
Sbjct: 1071 PIDQLKANELNELLEAFGYSAGLNFESLKGMLKGFIDLTFEHKGQFYIADYKSNHLGDDF 1130

Query: 892  --------EIEHIPYTHIAQLSIYEKILKDS---------YPNKSLVCLLIYVSE----- 929
                          + +  Q  IY   L            Y      C  +++       
Sbjct: 1131 SHYGLDAMAGAIRSHRYDLQYIIYTLALHRYLNLRMPNYDYDLHLGGCYYLFLRGMSVDS 1190

Query: 930  ---PKVFIIPQNKLNKAFAEI 947
                  +  P   L +A   +
Sbjct: 1191 PMSGIFYDKPPKALIQALDAL 1211


>gi|127511239|ref|YP_001092436.1| ATP-dependent DNA helicase Rep [Shewanella loihica PV-4]
 gi|126636534|gb|ABO22177.1| ATP-dependent DNA helicase Rep [Shewanella loihica PV-4]
          Length = 670

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 103/641 (16%), Positives = 210/641 (32%), Gaps = 122/641 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K +  +E +     L+  +    +    +       K  +   +   L   L   Y +  
Sbjct: 118 KELTEKEFDGDKDLLRMLMTAISNWKGDLMTPDGAIKTARDEQS--QLFALLYQRYAQHM 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    LDF+DLI+    LL+       +R +  + I ++L+DE QDT+  Q+E+++ L  
Sbjct: 176 KAYNALDFDDLILLPTLLLRH---KQEVRERWQKRIQYLLVDEYQDTNTSQYELVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA+P+ ++   +              +I+L 
Sbjct: 233 E----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPN--------LKLIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +    S  S                              
Sbjct: 275 QNYRSSQRILRAANILIANNPHVYDKSLFSELAYG------------------------- 309

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E       +  ++ +  ++A  I +                    Q  D  +L R
Sbjct: 310 -----EPLRVLIAANEEQEAERVVAEMIRH--------------KFVGKTQFGDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+           +I    +          IKD+MA  R +++ +DD +F+ ++
Sbjct: 351 GNHQSRLLERAL----MTNRIPYKLSGGTSFFGRAEIKDIMAYLRLVVNPDDDNAFLRVV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHI 494
             P        + ++      +  +++E               +S      K+I +    
Sbjct: 407 NLPKRGIGPATLERLGNYANEQHISMFEAIFHSELNHHLPPAAMSALYQFGKFIVDTGEA 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLRN----EQNSYS 545
           A    P +    ++               ++     +  + E   +        E +   
Sbjct: 467 ATRGEPVEAVKQLIRHINYEDYLYETSTSAKAAEMRMKNISELYRWVTEMLEGDELDEGM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L E+++ L       + +     ++V++MT+H +KGLE P VF+V    ++  H+    
Sbjct: 527 TLPEVVTRLTLRDMMERNSEDEAGDQVQLMTLHASKGLEFPYVFMVGVEERILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              +   EE  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVEEERRLAYVGITRAQRELWFM 611

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                    +  +      + +   +D   +  K   S  +
Sbjct: 612 ICRERRQFGEVMRCEPSRFLMELPQDDLIWENRKPPQSEQQ 652


>gi|162418460|ref|YP_001605138.1| DNA-dependent helicase II [Yersinia pestis Angola]
 gi|162351275|gb|ABX85223.1| DNA helicase II [Yersinia pestis Angola]
          Length = 720

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/552 (18%), Positives = 176/552 (31%), Gaps = 116/552 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  +             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRLLAGE----------RSNVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST+                               +         LW
Sbjct: 273 --GAETIRLEQNYRSTS---------------------IILAAANALIANNDGRMGKNLW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S    F+ L +       AR +   I        +         
Sbjct: 310 -------TDGAEGEPISLYCAFNELDE-------ARFVVNRIKAWQDNGGVL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++                        D   IKD +A  R I ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEALLQTAT----PYRIYGGQRFFDRQEIKDSLAYLRLISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++  +        A    S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQSTRAMLQEKVLAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
           ++ I  L         H     ++        +    G +    I+ L+E +  T +   
Sbjct: 462 VELIDSLARETADMPLHVQTDRVIRDSGLWSMYEQEKGEKGQARIENLEELVTATRQYSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L             A  + V++MT+H+AKGLE P VF+V     +F 
Sbjct: 522 QDEDQDLMPLQAFLSHAALEAGDGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGLTRAM 607

Query: 660 DQLIICKHSNTS 671
            +L +C   +  
Sbjct: 608 QKLTLCYAESRR 619


>gi|66043948|ref|YP_233789.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            syringae B728a]
 gi|63254655|gb|AAY35751.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            syringae B728a]
          Length = 1230

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 128/1004 (12%), Positives = 278/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +     E          LT     +        +           ++  +    
Sbjct: 272  EKLAAWAADDTQEALDLGTGFTRLTPDGIAEAWKGDPPAHPAF--------EAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++  +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDGLPKPDAA----VLQHAAQWVSVRFEEEKRRRAEMGFDDMLLRLDAAL-HGAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEANDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E  +     
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVESVNHVFTRAEQREQGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                  H +         Q  ++ +    +               +        LA   A
Sbjct: 485  FLFRDEHGNQVPFSDALAQGRKETLHVDGAPLTALTVWHLQSDQPVSGVVYRQQLAASCA 544

Query: 351  YTISNMIGTDTIFSNGKK------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++      S G        R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGSAGFVTPDSTLRGLRPADIAILVRDGKEAQAVRQQLTA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ + +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWERRVMQFRGYRAIWRSQGVLPMLRRLLHDFALPQTLMTRNDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +            +S+        LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADG----------KSQISLQPTEALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      +        +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNANTSMLHRSALGYLLGGGAALAESAEL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN--- 749
            N   +D     +     P   P +   +  +             +       +       
Sbjct: 877  NIWLRDLAQGCDAIALQPVPEPTDERFSAPRNAAALVKLLVPKRRAAENWWIASYSALRI 936

Query: 750  -----DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  IFTL-------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                          K ++ +   C +           + L  +  + L          + 
Sbjct: 997  AGNEGFANTAHAPDKLQDAVARRCNRRGWAGWINTLSDWLQHLLNMPLRLSPDAAPVALG 1056

Query: 839  TAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQIS 872
                 + Y  E+     S  +N  + D ++                       G ID   
Sbjct: 1057 ELDQPNQYRVEMEFWFASNNVNVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +  + P           +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGSDDSAYTPLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F  P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSASQGAYFARPPRELIESLDLLFQGKP 1220


>gi|153948778|ref|YP_001399172.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP
           31758]
 gi|152960273|gb|ABS47734.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP
           31758]
          Length = 673

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/662 (15%), Positives = 211/662 (31%), Gaps = 121/662 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ +    +    + D        +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLVSAISNWKNDLLDPAAAAATARSERD--KLFVHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+K      +R +    + ++L+DE QDT+  Q+++++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQKN---LEVRERWQNRLRYLLVDEYQDTNTSQYQMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++                  +I+L 
Sbjct: 233 N----------RARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPA--------LRVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S                              
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E        +   ++    A R+            + ++   +  Q  D  +L R
Sbjct: 305 -----ELSYGDELKVITANNEDHEAERVV---------GELIAHHFVKKTQYSDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+        ++++               G+   Q    ++  +I +
Sbjct: 407 NTPKREIGAATVQKLGEWANLRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWMDGIIRL 466

Query: 495 AQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E +   +
Sbjct: 467 VEREPVAAVRDLIHGIDYESWLFETAPSPKAAEMRMKNVNLLFSWMTEMLEGSELDEPMT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D   +  +   S  +          +        +
Sbjct: 612 CKERRQYGELIRPEPSRFLMELPQDDLNWENERKAVSPEERMQKGQSHLANLRAQLANAK 671

Query: 727 EE 728
           + 
Sbjct: 672 KP 673


>gi|288575116|ref|ZP_06393473.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570857|gb|EFC92414.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 671

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 114/726 (15%), Positives = 212/726 (29%), Gaps = 142/726 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  K  W +    V                 +  +   +           +
Sbjct: 46  GAGSGKTRVLTSKLAWLVAERSVPPWRILAVTFTNKAAREMKDRVDAM---LDGGYPYGQ 102

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKS-----PDLKEKLKKSQDEFIKIRDRFNTYKMF 120
            S   SF L   F  +  +  +   +        D    +KKS         +     + 
Sbjct: 103 ISTFHSFGLQMLFRNRDALEARGYRRNFVVFDRGDSLSLVKKSMKAMKLDTSQMEPSWVL 162

Query: 121 K--------------STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
           +                         L + Y ++ K+    DF+DLI+    L+      
Sbjct: 163 ECISKAKTGSDPVSMDGAILEGDMAELYSLYTKSLKEQGAFDFDDLIVMPLHLMSTD--- 219

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             I  K    ++ IL+DE QD +  Q+ ++R L  D             + AVGD  QSI
Sbjct: 220 RDILKKERDRLDWILVDEYQDVNRPQFALLRLLAGD----------SPNVMAVGDPDQSI 269

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y + GA+   +L  +R              +I L  ++RST  IL   + V     N   
Sbjct: 270 YGWRGADMSVILGFERHFP--------GSKVILLEQNYRSTETILDAANSVIGNNVNRPE 321

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                  LW        ++   +  +  +  D   +       A
Sbjct: 322 KR---------------------LW-------TARSGGEPINVVTLGDERAE-------A 346

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R ++  +  ++              +  D+ VL R    +               +    
Sbjct: 347 RYVSDVVEELLSLG----------YRYTDMAVLYRMNALSRNFEQEF----VKRGLPYRV 392

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF----KICTQRHE 462
                  D   IKD ++  R  ++  D  +   +   P        +      + T   E
Sbjct: 393 VKGTAFYDRKEIKDAISYLRLAVNPRDASALARVANVPPRGLGAKGLESVESYLSTHASE 452

Query: 463 TETVYEYIQKFANCGISK----FQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQF 517
             T +  I         K     + + +++  LI I +      ++   ++G     ++ 
Sbjct: 453 ARTTWCRIADGGCGLRGKGDKGIRDLARHMISLIDIGSDLNRAVEYIMDVIGYGSYLEKG 512

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                 E  + + E  +           SL+++++E+  Y            + + + ++
Sbjct: 513 YPDQFEERRENVMELTSI-----SPGSESLEDVLAEIALYTDQEVDDI---PDGISLSSL 564

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE PVVF+V     +F H                                     
Sbjct: 565 HAAKGLEFPVVFIVGMEDGIFPHGRSLDGG------------------------------ 594

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              +   EE  RL YVGMTRA ++L +                    +++   N   V+ 
Sbjct: 595 ---RDELEEERRLCYVGMTRAEERLYLTSSRFRRLFGSVMNNDVSRFIWEIPENYRVVES 651

Query: 698 IKLTNS 703
                 
Sbjct: 652 RAGEGP 657


>gi|83319825|ref|YP_424677.1| ATP-dependent DNA helicase pcrA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|90110084|sp|P45612|UVRD_MYCCT RecName: Full=Probable DNA helicase II homolog
 gi|83283711|gb|ABC01643.1| ATP-dependent DNA helicase pcrA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 722

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 115/618 (18%), Positives = 208/618 (33%), Gaps = 123/618 (19%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE-----FIKIRDRF--NTYKMFK 121
           L   FL      QK II   + + + +L E  KK+ D+       + ++     +  +  
Sbjct: 107 LEDKFLIIDSDDQKRIIKSALKESNIELSENDKKTFDKKILYKIKEWKEELVDPSEAILN 166

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
           +T         +   Y+    KN  LDF+DL I    L K+ +    I  K     +++L
Sbjct: 167 ATSTLEKNFAVIYRLYQNTLLKNNSLDFDDLQIYVYRLFKQNNE---ILNKWRNAYDYVL 223

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ +Q+ +I+ LT           +   L  VGD  Q+IYS+ GA+   +L   
Sbjct: 224 VDEFQDTNELQFSLIKFLT----------INTNHLTVVGDPDQTIYSWRGAKLDIILNFN 273

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +      +        I L  ++RST  IL + +      +  +     +      +   
Sbjct: 274 KTYSNAIS--------IVLNQNYRSTKQILDISNSFIKNNKFREHKEIFTNNKSGKKVV- 324

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                                             L + +S +  A  ++  I  ++    
Sbjct: 325 ----------------------------------LKECNSKTSEASYVSSKIKELVKQG- 349

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                       KDI +L R    +          K    I           +   IKD 
Sbjct: 350 ---------YHYKDIFILYRMNAWSQEFEKELANKK----IPFQLIGGIKFRERKVIKDA 396

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISK 480
           MA  + I S +D+LS   +L   +       I K I T       +++ I       +  
Sbjct: 397 MAFLKMI-SIKDNLSSQRVL-GLIPKIGNITIEKIINTANLNHLNIFDLITNEDKTLLHS 454

Query: 481 FQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
               +  + E+   A        +  +    +L       +   R   + ++ ++   + 
Sbjct: 455 ITKNLDELIEVFKTAHQLYLDNTNIEEILKYLLIQSGYENKLKIRKEQDDLENINALYDQ 514

Query: 536 TLRNEQNSYS----SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
             R +++          +LI+ L++   T     +   ++V ++TVH AKGLE+ VVF+ 
Sbjct: 515 LKRFDEDFDPKYYSEENKLIAFLQEEALTSDIDEAEQIDKVSLLTVHAAKGLENKVVFIT 574

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +F  +                                  I     +  EE  R L
Sbjct: 575 GLNQGIFPSR----------------------------------ISETSINELEEERRAL 600

Query: 652 YVGMTRASDQLIICKHSN 669
           YV +TRA D+L +     
Sbjct: 601 YVALTRAKDELFLTYVKG 618


>gi|238025782|ref|YP_002910013.1| UvrD/REP helicase [Burkholderia glumae BGR1]
 gi|237874976|gb|ACR27309.1| UvrD/REP helicase [Burkholderia glumae BGR1]
          Length = 694

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 99/577 (17%), Positives = 185/577 (32%), Gaps = 129/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L    +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPTELFASNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYQLLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +++L  ++RST  ILT  + V +           S           G   T+ 
Sbjct: 279 -----LHLVKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDTIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RTQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 406 NPDDDPAFIRAVTTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 466 VFCDFIQRLTDRADKEPASVVLDDMMEAIHYEAYLYDAFDERQAQTRWQNVLEFLEWLKR 525

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E   + +   L          ++             + + VR+ TVH 
Sbjct: 526 KGTKPETEAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKDEDPDAVRLSTVHA 585

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     V  H+   +                                 +
Sbjct: 586 SKGLEYPHVFLVGVEEGVMPHRGSSED------------------------------DAI 615

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 616 DDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 652


>gi|53720964|ref|YP_109950.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243]
 gi|126441529|ref|YP_001060912.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668]
 gi|126451499|ref|YP_001068210.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a]
 gi|134281638|ref|ZP_01768346.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305]
 gi|217424087|ref|ZP_03455587.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576]
 gi|226193195|ref|ZP_03788805.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan
           9]
 gi|242314228|ref|ZP_04813244.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b]
 gi|254183976|ref|ZP_04890567.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655]
 gi|254186442|ref|ZP_04892959.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261078|ref|ZP_04952132.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a]
 gi|52211378|emb|CAH37368.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243]
 gi|126221022|gb|ABN84528.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668]
 gi|126225141|gb|ABN88681.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a]
 gi|134247305|gb|EBA47391.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305]
 gi|157934127|gb|EDO89797.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur
           52237]
 gi|184214508|gb|EDU11551.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655]
 gi|217393150|gb|EEC33172.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576]
 gi|225934795|gb|EEH30772.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan
           9]
 gi|242137467|gb|EES23869.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b]
 gi|254219767|gb|EET09151.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a]
          Length = 695

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 98/578 (16%), Positives = 181/578 (31%), Gaps = 130/578 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R +    + ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPTELFARNE---PVRDRWQNRLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RTQFRDYAILYRGNFQARVFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL----- 533
               +I  L   A          D    I         +  R        + EFL     
Sbjct: 466 IFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKR 525

Query: 534 -------NFTLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVH 578
                     +  E   + +   L          ++             + + VR+ TVH
Sbjct: 526 KGTKPEAEQAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H        +                             
Sbjct: 586 ASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDD--------------------------- 618

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                 EE  RL+YV +TRA   L +         +++
Sbjct: 619 ---ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|149920859|ref|ZP_01909321.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149818258|gb|EDM77711.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 1100

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 141/837 (16%), Positives = 271/837 (32%), Gaps = 94/837 (11%)

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             LAKY     + AK++  V D++DL+     LL++R  +   R ++ +  + +LIDEVQD
Sbjct: 260  DLAKYFLPQIDLAKRRAAVADYDDLLFRAAWLLRERPNA---RARLAERFDAVLIDEVQD 316

Query: 188  TSLIQWEVIRSLTEDFFV---GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            T  IQ EV   LT +                LFAVGD +QSIY F  A+       +   
Sbjct: 317  TDPIQAEVAALLTREPDADGEWDAHPPRRGRLFAVGDAQQSIYRFRRAD-------QTTW 369

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            ++  +   +    + L  +FRS   ++  V+  F      Q                 G+
Sbjct: 370  RQLESLLMRDGEKLALTENFRSVPYLVEWVNTTFGHLPGYQRQRPHRQQ---------GR 420

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            +  V       +  D         +        +    +                     
Sbjct: 421  LMPVVRLPLPPTATDLDELGAIVRYLLELRRCGEVVDKTTQ------------------- 461

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
              + R +   D+++L+             +       I  V        +   I+   A 
Sbjct: 462  --QPRALVWSDVMLLLPSWARA----DALQDALTRAGIPAVVEGGGSFFERDEIRLATAA 515

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
               +    D+ S V +L+  LF  + +D+ K             +     +         
Sbjct: 516  LECLNEAGDEQSAVFVLRG-LFGLTWEDLAKHRAADG------AWRYSVPDPPPGPVADA 568

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNS 543
               +  L       S       +L   +    + + R G   +  LD+      + E  +
Sbjct: 569  FSLLRSLARRRGRDSWVALLDELLDRSRAAAVWALLRDGEAKLANLDKLRGLIRQFELTA 628

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S  + L                     VRI +   AKGLE+PVV L             
Sbjct: 629  RSPAEVLRMLGALDKEQDLSRVDVGEEAVRITSYFKAKGLEAPVVMLCFA---------R 679

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            ++   + +  +     + +     R           K +  EE  R +YV  TRA DQL+
Sbjct: 680  RRSEGVQAAVNRRERKVAVKLGALRLVDWERYETEEKLANTEERRRWMYVAATRARDQLV 739

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE-NT 722
            I              R    ++ +   N            +   +W    ++   P+ +T
Sbjct: 740  IV------------DREQNKLIREHLANGLPFTAAMNPALLPPPQWRDGTFADLDPDVDT 787

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
             LE         D  +   +L         E      S  +   +  +    S +     
Sbjct: 788  WLEDPPDEPPEPDPTEQWSRLIRDTITQSKEASTSWKSVHELASRERVSGP-SSSVGILG 846

Query: 783  GLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP-AKEYKNLLLSI-TRLLENPMMT- 838
            G ++H +++ +     +  +     +     A+      E   L   I  R+L++P +  
Sbjct: 847  GNLVHAVMEKLDFSGSKEAQTERAEALLPGLARSLGVGPERTQLCRGILLRMLDDPTLDI 906

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN---IFIFEYKTHHHVPQEIEH 895
               + + + EV  + +    + + ++SGRID    + ++    ++ ++K+          
Sbjct: 907  ARSAPEHWVEVPFAYR--DDEHERVVSGRIDLAFPTDESRRLWYVVDWKSDLPPRDSPGW 964

Query: 896  IPYTHIAQLSIYEKILKDSYPN-KSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                + AQL  Y K + D  P+ +    +L+         + Q    +  AE+  ++
Sbjct: 965  --RNYQAQLEHYSKAVLDIVPSCEECRAVLV----GPFPELDQPTFREQLAELQPEL 1015


>gi|51594519|ref|YP_068710.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP
           32953]
 gi|108806144|ref|YP_650060.1| ATP-dependent DNA helicase Rep [Yersinia pestis Antiqua]
 gi|108810257|ref|YP_646024.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516]
 gi|145600739|ref|YP_001164815.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides F]
 gi|153997074|ref|ZP_02022207.1| ATP-dependent DNA helicase Rep [Yersinia pestis CA88-4125]
 gi|162419101|ref|YP_001605104.1| ATP-dependent DNA helicase Rep [Yersinia pestis Angola]
 gi|165926312|ref|ZP_02222144.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939683|ref|ZP_02228226.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009458|ref|ZP_02230356.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213533|ref|ZP_02239568.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167402081|ref|ZP_02307560.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167420825|ref|ZP_02312578.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425939|ref|ZP_02317692.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167468461|ref|ZP_02333165.1| ATP-dependent DNA helicase Rep [Yersinia pestis FV-1]
 gi|170026248|ref|YP_001722753.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis YPIII]
 gi|218930873|ref|YP_002348748.1| ATP-dependent DNA helicase Rep [Yersinia pestis CO92]
 gi|229837205|ref|ZP_04457370.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides A]
 gi|229839567|ref|ZP_04459726.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229900129|ref|ZP_04515266.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900424|ref|ZP_04515553.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516]
 gi|270488781|ref|ZP_06205855.1| ATP-dependent DNA helicase Rep [Yersinia pestis KIM D27]
 gi|294505534|ref|YP_003569596.1| ATP-dependent DNA helicase Rep [Yersinia pestis Z176003]
 gi|51587801|emb|CAH19403.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP
           32953]
 gi|108773905|gb|ABG16424.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516]
 gi|108778057|gb|ABG12115.1| ATP-dependent DNA helicase Rep [Yersinia pestis Antiqua]
 gi|115349484|emb|CAL22458.1| ATP-dependent DNA helicase Rep [Yersinia pestis CO92]
 gi|145212435|gb|ABP41842.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides F]
 gi|149289380|gb|EDM39458.1| ATP-dependent DNA helicase Rep [Yersinia pestis CA88-4125]
 gi|162351916|gb|ABX85864.1| ATP-dependent DNA helicase Rep [Yersinia pestis Angola]
 gi|165912373|gb|EDR31007.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921836|gb|EDR39033.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991380|gb|EDR43681.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205206|gb|EDR49686.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960954|gb|EDR56975.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167048555|gb|EDR59963.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055087|gb|EDR64886.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169752782|gb|ACA70300.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis YPIII]
 gi|229682443|gb|EEO78530.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516]
 gi|229686909|gb|EEO78988.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695933|gb|EEO85980.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706148|gb|EEO92157.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides A]
 gi|262363600|gb|ACY60321.1| ATP-dependent DNA helicase Rep [Yersinia pestis D106004]
 gi|262367528|gb|ACY64085.1| ATP-dependent DNA helicase Rep [Yersinia pestis D182038]
 gi|270337285|gb|EFA48062.1| ATP-dependent DNA helicase Rep [Yersinia pestis KIM D27]
 gi|294355993|gb|ADE66334.1| ATP-dependent DNA helicase Rep [Yersinia pestis Z176003]
 gi|320013528|gb|ADV97099.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 673

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/662 (15%), Positives = 211/662 (31%), Gaps = 121/662 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ +    +    + D        +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLVSAISNWKNDLLDPAAAAATARSERD--KLFVHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+K      +R +    + ++L+DE QDT+  Q+++++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQKN---LEVRERWQNRLRYLLVDEYQDTNTSQYQMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++                  +I+L 
Sbjct: 233 N----------RARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPA--------LRVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S                              
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E        +   ++    A R+            + ++   +  Q  D  +L R
Sbjct: 305 -----ELSYGDELKVITANNEDHEAERVV---------GELIAHHFVKKTQYSDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+        ++++               G+   Q    ++  +I +
Sbjct: 407 NTPKREIGAATVQKLGEWANLRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWMDGIIRL 466

Query: 495 AQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E +   +
Sbjct: 467 VEREPVAAVRDLIHGIDYESWLFETAPSPKAAEMRMKNVNLLFSWMTEMLEGSELDEPMT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D   +  +   S  +          +        +
Sbjct: 612 CKERRQYGELIRPEPSRFLMELPQDDLNWENERKAVSPEERMQKGQSHLANLRAQLANAK 671

Query: 727 EE 728
           + 
Sbjct: 672 KP 673


>gi|254250937|ref|ZP_04944255.1| UvrD/REP helicase [Burkholderia dolosa AUO158]
 gi|124893546|gb|EAY67426.1| UvrD/REP helicase [Burkholderia dolosa AUO158]
          Length = 714

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 106/577 (18%), Positives = 187/577 (32%), Gaps = 128/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 194 AALVYRNYVATLHAYQAVDFDDLIRLPTELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 250

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 251 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 297

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S   +       G   TV 
Sbjct: 298 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEHGM-------GDPVTVT 345

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                         +     A  + +          + ++  +R
Sbjct: 346 ----------------------------ACNDEEHEAESVVFR---------LSAHKFER 368

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 369 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 424

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   I   +
Sbjct: 425 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQIEPLR 484

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 485 MFCDFIQRLTERADKEPASVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 544

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E + + +   L          ++             + + VR+ TVH 
Sbjct: 545 KGTKPETEAVDGEADGFHNADGLADTGKNLLGLIQTVALMSMLEGKDEDPDAVRLSTVHA 604

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+             D   PI                   
Sbjct: 605 SKGLEYPHVFLVGVEEGIMPHR----------GGSDDDGPI------------------- 635

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 636 DDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 672


>gi|167036302|ref|YP_001671533.1| ATP-dependent DNA helicase Rep [Pseudomonas putida GB-1]
 gi|166862790|gb|ABZ01198.1| ATP-dependent DNA helicase Rep [Pseudomonas putida GB-1]
          Length = 669

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 97/634 (15%), Positives = 208/634 (32%), Gaps = 125/634 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  +        A  +  HY+   K    +DF
Sbjct: 129 DDGIDEIKNMIGAWKNDLILPPEALEKARNPRE-----QTAAIVYTHYQRTLKAFNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  +    + ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILQPVKLFQEHPE---VLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGM------- 233

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                    VGD+ QSIY++ GA P+ ++  K               I+ L  ++RST+ 
Sbjct: 234 ---RNQFTVVGDDDQSIYAWRGARPENLMLLKEDYP--------SLKIVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + +   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLIANNPHAFEK---------------------QLWSEMGVGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCKNEEAEAERVAMEILTLH---------LRTNRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +++ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y   ++             + Q    ++  + H      P  
Sbjct: 415 STTLEKLGNYSTERGISMYAASEELGLGEHLDARYTERLQRFKHWLDGVRHKVALEDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++           +  ++      I  +   +      L  ++    ++++ I +L
Sbjct: 475 ALHEMIRDIDYENWIRQQTASDKAADFRISNVWFLVEALKNTLEKDEEGDMTIEDAIGKL 534

Query: 555 EQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                   ++    N   V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            +    T    + +   +D   + +       K 
Sbjct: 620 GEIIDCTPSRFLDELPPDDLAWEGLDDAPVEVKA 653


>gi|253998950|ref|YP_003051013.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
 gi|253985629|gb|ACT50486.1| UvrD/REP helicase [Methylovorus sp. SIP3-4]
          Length = 1137

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 119/920 (12%), Positives = 267/920 (29%), Gaps = 115/920 (12%)

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            +  +     T + + +K +         PD K   ++  +    ++              
Sbjct: 282  WLAVCELLFTGQDSWRKTVNVNTGFPAVPDSKPYKEQLAELIAALQATAGADAALCRLRC 341

Query: 126  SLTLAK-----YLNAHYEEAK-----------KKNCVLDFEDLIINTNDLLKKR-DVSAW 168
               L        + +   +             ++   +DF ++     + L    D  + 
Sbjct: 342  LPQLRAGEESWQVISALAQLLNLAVAQLWFVFQEAREVDFVEISQRALNALADDADAPSD 401

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +  ++D  I H+L+DE QDTS  Q  +++ LT  +  G       RTLFAVGD  QSIY 
Sbjct: 402  LALRLDYRIQHLLVDEFQDTSPGQVHLLQRLTRGWEAGDG-----RTLFAVGDPMQSIYR 456

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F  A     L   R             + ++L  + RS   ++  ++  F+     +   
Sbjct: 457  FRKANVGLFLEVARE-----GIGDIHLTPLQLCRNNRSCPPVVDWINHAFAKVFPREDSI 511

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                             G ++    V ++ D                   E   +  A  
Sbjct: 512  AR---------------GAIRYRPFVATRADEVDTGVVMHPLIQGTDESNEQLRTREAAL 556

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +   I             +      + I VLVR R     +    R  ++   I     +
Sbjct: 557  MVKLIRE-----------EWAAHPQRRIAVLVRARSHLEHLVADIR--RHHRDIRFQAVE 603

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY- 467
               L     I+DL+AL   +  + D ++++ +L++P    +  D+  +    H +     
Sbjct: 604  IEALAGRQIIQDLLALTHALHHRADRVNWLAILRAPWCGLTLADMHVLAASDHRSTIWRL 663

Query: 468  ----EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                  +      G  +  HV   + E++          +         G          
Sbjct: 664  LQQDARLAAMTEDGRQRALHVRSILQEVLAQQGRLPVSRWLHSAWLMLGGPWCLWEPGDV 723

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            + +      ++      Q + + L E + +L            A    +++MT+H +KGL
Sbjct: 724  QDVQAFFALVDKLDNQGQFTPTRLAEEVEKLYAAADE------AADGRLQLMTIHKSKGL 777

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG----------IPIWIPQSKSRNNIVS 633
            E   V L     +  +      +    ++ D+                  +         
Sbjct: 778  EFDTVILPGLERKTGNQDSPLLLWEEVAIADEEQGSSVELVAAPFVPKGARLDDGPTPYD 837

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFHND 692
             L    K+  + E  R+LYV  TR   +L +   +  + + +    +   + +       
Sbjct: 838  YLRLLEKERAEHEDARVLYVAATRTERRLHLIATATVNAKGEPRPASGSFLQLLWPQVAL 897

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +  + +                +   P    L++ +    L                + +
Sbjct: 898  QFAEAMATEGVSETSPQAEATLADFVPPLVRLQQPQMPAVLQTATPFTPLWN---PGEAS 954

Query: 753  EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--------F 804
            E   L  S                    + G + H+ L+++                   
Sbjct: 955  ESLSLAASLE-----------------ADIGTLAHRYLELMARQGLATWPEGRIHQAMPA 997

Query: 805  ITSYCTKNAKLW--PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
            +  +  +              ++  +   L +      +     ++  V+       +  
Sbjct: 998  MQRWLQQQGHAEKQAHAAAAVVVQLLLTTLRSADGQWVLQAREGADAEVAWSYADASE-- 1055

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNK 918
            +    +D+  +     +I +YKT        E         +  QL  Y  +        
Sbjct: 1056 LKRYVVDRTFMENGVRWIIDYKTVALPADISEEQLRAQVARYRLQLDNYASLFAGQ--GT 1113

Query: 919  SLVCLLIYVSEPKVFIIPQN 938
             +   + +++  ++  +   
Sbjct: 1114 LVRKAIFFLALGRLVELAAE 1133


>gi|153931653|ref|YP_001383067.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934674|ref|YP_001386616.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. Hall]
 gi|152927697|gb|ABS33197.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. ATCC 19397]
 gi|152930588|gb|ABS36087.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. Hall]
          Length = 884

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 120/725 (16%), Positives = 220/725 (30%), Gaps = 123/725 (16%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++ KK    LDF DLII T  +L+       +R K  Q++ +I++DE QD ++ Q+ ++
Sbjct: 186 YQQ-KKNYN-LDFNDLIIFTLHILETFP---KVRKKWQQKLEYIMVDEFQDVNIKQYRLV 240

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L+E            + LF VGD  Q++YS+ GA    +L   +          +   
Sbjct: 241 SILSEY----------HKNLFVVGDPDQTVYSWRGANINLILNFDKEF--------KGTK 282

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I +  ++RS+++I+   + + S  +                                  
Sbjct: 283 TIMMNQNYRSSSNIIKASNSLISKNKQR-------------------------------- 310

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
             D +  P +           +       A  I   I  +I                K+I
Sbjct: 311 -IDKELIPIKHGNIPVVYKHSENIYKE--ANWIINQIEQIIKGGN----------SYKNI 357

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R    +  I           KI               IKD+++  R ++  EDDLS
Sbjct: 358 AILYRAHYVSRSIEEAL----LKNKIPYTLYSGVEFYQRKEIKDILSYLRMVV-FEDDLS 412

Query: 437 FVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY---IQKFANCGISKFQHVIKYIHELI 492
           F+ ++  P  NF +  +  I         ++Y       +      SK    +  I    
Sbjct: 413 FIRIINEPKRNFGKKRMEIIRKYAEDNNCSLYSSLKINLEDKLIAKSKADKFVDLIERYK 472

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            I +     D    +L              +E ++ L E  N     E ++      L  
Sbjct: 473 KIYKEMRITDLLMELLNNSGYEAMLRESGEDERLENLAELKNSISDYENSAGED-TTLED 531

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            L++           N + + +MT+HTAKGLE P VF+ +    +F              
Sbjct: 532 YLQEISLFTNSDLKENKDTINMMTLHTAKGLEFPYVFICEFNEGIFPSARTNT------- 584

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                       K   EE  RL YVG TRA + L +      + 
Sbjct: 585 ----------------------------KEKMEEERRLAYVGYTRAKNALFLSDAEGVNY 616

Query: 673 EKKSNQRTWY------DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
           +      + +        +       E +         + +  +    +        +  
Sbjct: 617 DGSYRFPSRFIFNTGKTYLNYLVELKESLIDDANEFISDSENSMNKSNNIKFKIGERIIH 676

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
           +     ++         +    ++      ++ ST   K  TN   ++  N+        
Sbjct: 677 KLLGLGVIIGIDNDNSSYMIKFDNAETFRNISFSTQLDKADTNNLDIIKSNERKAID--- 733

Query: 787 HKLLQVI-FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
           H   + +     E +R         +  +     E           LE   +        
Sbjct: 734 HLEAERLEAERKEQERLEAERLEAERKEQERLEAERLEAERKEQERLEAERLEAERKEQE 793

Query: 846 YSEVS 850
             E  
Sbjct: 794 RLEAE 798


>gi|291454012|ref|ZP_06593402.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291356961|gb|EFE83863.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1125

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 131/975 (13%), Positives = 276/975 (28%), Gaps = 106/975 (10%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +  +  + + + L      + +  + +    +       L  A+ L+  S  +       
Sbjct: 95   AAVDLRDRMAQRLSTATAPRATTFHSFCYALVRAHQDADL-FAEPLRLLSGPEQDVAVRE 153

Query: 68   LLSS---------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            LL+            +      +  + T+    +   +      ++   + +        
Sbjct: 154  LLAGQIELGRQGRARVHWPDELRACLTTRGFADEVRAVL-----ARSRELGLGADALAEF 208

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              +      + A    A Y +       LD+ +L+     L ++ + +     ++ +  +
Sbjct: 209  ARRGGRPDWSAAASFLAEYLDLLDAQGTLDYAELVHRAVLLAERPETAR----QLAETYD 264

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             + +DE QDT   Q  ++R+L  +           RTL A GD  QSIY+F GA+   +L
Sbjct: 265  AVYVDEYQDTDPAQVRLVRALAGNHGPAVPGAGGGRTLVAFGDPDQSIYAFRGADVNGIL 324

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                  ++     G    +  L    RS A ++     V       +  ++         
Sbjct: 325  EFPETFRR---ADGAPAPVAVLTTGRRSGAHLVEATRLVTRRMPLTRLSADTVRAHRSLS 381

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MI 357
             +R G       +    ++ D+  +  + +         + +            +   + 
Sbjct: 382  PARDGGRVEAYTYPTTGAELDNIADILRRAHLEEGVPWGEMAVLVRSGGHTIPAVRRALT 441

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT--RFLKNDYKISVVGNDRFILTDH 415
                        +    +  V           T     R  +    +     D       
Sbjct: 442  SAGVPLDIDGNDLPLRHEPAVAPLLTALRAAATAALQDRAEEEAGPVPEPEPDAGTQDTA 501

Query: 416  LAIKDLMALGRFILSQ--EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
             A  D       + S     D +    L   L +        +               + 
Sbjct: 502  PAWLDTETALTLLASPLAALDAADQRRLGRALRDEERAAGNPLPPPSDTLLARALAEPER 561

Query: 474  ANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISR------FG 522
                   + H  + + EL+  A+       S  +    +       Q+           G
Sbjct: 562  LVTH-EGYAHGARLLGELLRRARTLLAKGGSAEEALWELWDGTTWPQRLERSARRGGAAG 620

Query: 523  NEVIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMT 576
                  LD     F       E+         ++E+E            +A  + VR+MT
Sbjct: 621  RNADRDLDAVCALFATAARAEERTGGRGALNFLAEIEAQDIAADTLTRRAARPDAVRLMT 680

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
             H +KGLE  +V +      V+     +   +        G+   +P             
Sbjct: 681  AHRSKGLEWRLVVVAGVQEGVWPDLRRRGSLLEADRIGRDGLAEPLPPG----------- 729

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                 +   E  RL YV  TRA+++L++      + +     R   ++        + V 
Sbjct: 730  -----ALLAEERRLFYVAATRAAERLVVTAVKAPAEDGDQPSRFLSEL----GVEPKDVS 780

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP---------- 746
                              +T  P  +   RE    +L     +  +   P          
Sbjct: 781  SRPRRPLSVAALVAELRATTVDPRVSATLREAAAHRLAKLAALTDEDGRPLVPTAHPDRW 840

Query: 747  -----------IKNDINEPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRGLII 786
                          D + P +L+ S +D       L+  L                G ++
Sbjct: 841  WGMREPTRSQVPLRDRDAPVVLSGSALDQLANTCALQWFLGREVKADAPASAAQGFGNVV 900

Query: 787  HKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            H L  +V            +            +A     +E +N   ++ R LE   +  
Sbjct: 901  HVLADEVASGRTPADLDVLMERLDSVWDALAFDAPWKSVQEKENARQALERFLEWHTLDR 960

Query: 840  AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPY 898
            A      SE      +     ++ I G +D++        ++ ++KT    P   E    
Sbjct: 961  AGRTPVASEHDFDITLGAGPYEVRIRGSMDRVEQDPRGRAYVVDFKTGKQAPTAAEV--- 1017

Query: 899  THIAQLSIYEKILKD 913
             H  QL++Y+  + +
Sbjct: 1018 AHHPQLAVYQLAVTE 1032


>gi|218296511|ref|ZP_03497239.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
 gi|218243053|gb|EED09585.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
          Length = 701

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 117/670 (17%), Positives = 206/670 (30%), Gaps = 138/670 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +   +       VS  +      +       +          +         
Sbjct: 71  AAEEMKARLKAMVRGAGELWVSTFHAAALRILRVYGER-VGLKPGFVVYDEDDQTALLKE 129

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           +L    L  K  P K+++ +  N+  P   E L     EF     R              
Sbjct: 130 VLKELGLAAKPGPIKSLLDRAKNQGVPP--EHLLLELPEFYAGLSRGR------------ 175

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              + +   Y+EA +    LDF D+++    LL++      +  ++ +    I +DE QD
Sbjct: 176 --LQDVLHRYQEALRAQGALDFGDILLYALKLLEEDGE---VLKRVRKRARFIHVDEYQD 230

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+   R L  +             L AVGD  Q IYSF  A+ + +L   +   K 
Sbjct: 231 TNPVQYRFTRLLAGE----------EANLMAVGDPDQGIYSFRAADIRNILDFTQDYPK- 279

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +  L  ++RST  IL   + V          +                   
Sbjct: 280 -------ARVYRLEDNYRSTEAILRFANAVIVKNALRLEKTLRPV---------KKGGEP 323

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V+L+    ++ +                          AR +A  I+ +           
Sbjct: 324 VRLFRAESARDE--------------------------ARFVAEEIARL----------- 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                   + VL R    + L+            I           +   +KDL+A  R 
Sbjct: 347 --GPPFDRVAVLYRTNAQSRLLEQAL----ASRGIPARVVGGVGFFERAEVKDLLAYARL 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ--KFANCGISKFQHV 484
            L+  D +S   +L +P        + K+    R     ++E ++            +  
Sbjct: 401 SLNPLDAVSLKRVLNTPPRGIGPATVEKVQAIARERGLPLFEALKVAALTLPRPEPLRAF 460

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQ 541
           +  + EL+ +A F     FF  +L A                + ++ ++E L      E 
Sbjct: 461 LALMEELMDLA-FGPAEAFFRHLLLATDYPAYLKEAYPEDAEDRLENVEELLRAAKEAE- 518

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               SL + + ++           +     V +MT+H AKGLE PVVFLV     +  H+
Sbjct: 519 ----SLMDFLDKVAL--TARAEEPAEAEGRVALMTLHNAKGLEFPVVFLVGVEEGLLPHR 572

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +   EE  RL YVG+TRA ++
Sbjct: 573 SSLST----------------------------------QEGLEEERRLFYVGVTRAQER 598

Query: 662 LIICKHSNTS 671
           L +       
Sbjct: 599 LYLSYAQERE 608


>gi|254367778|ref|ZP_04983799.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica 257]
 gi|134253589|gb|EBA52683.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica 257]
          Length = 671

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/617 (16%), Positives = 191/617 (30%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 138 QAKISFWKSALLTPDQVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 198 ---SNIQKFWADKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 297 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 321

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 322 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLESYMQIHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        + K+     + 
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATVHKLGEYASQH 428

Query: 464 ETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +        +  +            I           S  +        +     
Sbjct: 429 HCSFFHTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 634 IDELPETDLYWVGTEKE 650


>gi|170026218|ref|YP_001722723.1| DNA-dependent helicase II [Yersinia pseudotuberculosis YPIII]
 gi|169752752|gb|ACA70270.1| DNA helicase II [Yersinia pseudotuberculosis YPIII]
          Length = 720

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/552 (18%), Positives = 175/552 (31%), Gaps = 116/552 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  +             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRLLAGE----------RSNVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST+                               +         LW
Sbjct: 273 --GAETIRLEQNYRSTST---------------------ILAAANALIANNDGRMGKNLW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S    F+ L +       AR +   I                  
Sbjct: 310 -------TDGAEGEPISLYCAFNELDE-------ARFVVNRIKAWQDNGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++                        D   IKD +A  R I ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEALLQTAT----PYRIYGGQRFFDRQEIKDSLAYLRLISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++  +        A    S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQSTRAMLQEKVLAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
           ++ I  L         H     ++        +    G +    I+ L+E +  T +   
Sbjct: 462 VELIDSLARETADMPLHVQTDRVIRDSGLWSMYEQEKGEKGQARIENLEELVTATRQYSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L             A  + V++MT+H+AKGLE P VF+V     +F 
Sbjct: 522 QDEDQDLMPLQAFLSHAALEAGDGQADAYKDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGLTRAM 607

Query: 660 DQLIICKHSNTS 671
            +L +C   +  
Sbjct: 608 QKLTLCYAESRR 619


>gi|15678500|ref|NP_275615.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621541|gb|AAB84978.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 916

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 141/854 (16%), Positives = 248/854 (29%), Gaps = 179/854 (20%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
             E   +  +  I+  +  N  +                A Y E  ++   +DF  L   
Sbjct: 146 AIEFFNRCTENCIEPEELINALRRKYPDREEYQGIAVCYARYLELLREQKKIDFPGLEKE 205

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              LL   +    +   + ++  +I+IDE QDTS IQ  ++R +               +
Sbjct: 206 VYLLLNSSE---RVLESVRKKYRYIMIDEYQDTSPIQELILREIAG----------KNSS 252

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +  VGDE QSIY F GA P+  +R +               ++ L  +FRS A I+   D
Sbjct: 253 ICVVGDEDQSIYGFRGATPENFIRFREEY---------DAEVVTLEDNFRSRAGIVLTAD 303

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
                  + +            +  R G    V L                         
Sbjct: 304 SFMRGERHYEKTI---------KPVRDGGTDVVIL------------------------- 329

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +    +  AR I   I  +  +  I   G         + +L R              
Sbjct: 330 --KSRDVNSEARNIVSLIKKLKSSGKIPEYGY--------VALLFRS---VRNHADKVLA 376

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ--------EDDLSFVCMLKSPLFN 447
                 I  +            ++ ++    ++            D    +   +    +
Sbjct: 377 ELRREGIPYIVRGDGSFLKRYEVRSMLYFLAYVDPPDYGGRFRKWDGWWNISRFRGEFLD 436

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF-----CSPHD 502
            + + +  +         + ++  +     I       + I  L  I         +   
Sbjct: 437 LTGETLRAL-ESLDRNCRLSDFTSRRELEEIGVHGEDAEKILGLNRIRHEVGKGSLTVLS 495

Query: 503 FFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQYP 558
            F  IL      ++ I    +        L +  +   R E     + +Q+L+  L   P
Sbjct: 496 TFYSILEVTGYLRRLIEDGSDSSRAKIFNLAKLSSLIDRYEAIKPGARIQDLLWYLYLLP 555

Query: 559 PTIKRAHS--ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
             +    +   +   V+IMTVH AKGLE PVVF+    +  F  K  K+   +P   +  
Sbjct: 556 THLHHDEAALEDPASVKIMTVHQAKGLEFPVVFICSVINGRFPVKRRKERDTIPIPGELL 615

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
             P  +P                     +E  RL YV MTRA D LII      +  K  
Sbjct: 616 LSPGEVP---------------------DEDRRLFYVAMTRAQDALIISTAPRINTRKVG 654

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                 D+       +                                            
Sbjct: 655 VSPFITDLREKCGIYECD------------------------------------------ 672

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF--------NRGLIIHK 788
                      +    EP  +N S + T  +     +L  +  F          G+I+H+
Sbjct: 673 --CTSVSRCLEREWSEEPLRINFSALFTYEECPFRYMLIYHYGFVYPETFMQRYGIILHR 730

Query: 789 LLQVIF---TLPEHKRKNFITSYCTK---NAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            L+ +       E      I     +           + + L   +     +        
Sbjct: 731 CLEELHLAMKNSEEINGALIRRIVERCWIPMGRDDKVKKRRLERELLNYYHDTR------ 784

Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHI 901
             +   VSV    + P  DIII GR D I  +    + + ++K        +E +   + 
Sbjct: 785 DHTGEVVSVEEPFSIPDTDIIIEGRTDLIIRTRDGELELVDFK--AREHGGVERMALEY- 841

Query: 902 AQLSIYEKILKDSY 915
            QL  YE  L++ Y
Sbjct: 842 -QLRTYEYALRERY 854


>gi|282866609|ref|ZP_06275651.1| UvrD/REP helicase [Streptomyces sp. ACTE]
 gi|282558511|gb|EFB64071.1| UvrD/REP helicase [Streptomyces sp. ACTE]
          Length = 1137

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 130/987 (13%), Positives = 279/987 (28%), Gaps = 116/987 (11%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +  E  + +   L      Q +  + Y    +       L  A  L+  S  +       
Sbjct: 93   AAVELRDRMATRLGGARGPQATTFHSYCYALVRAHQDADL-FADPLRLLSGPEQDVAVRE 151

Query: 68   LLSS---------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            LL+            +      +  + T+    +   +      ++   + +        
Sbjct: 152  LLAGQVGLERSGLAHVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLGPDALAAF 206

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              ++     + A    A Y +      VLD+ +L+     L ++ +    +  ++ +  +
Sbjct: 207  ARRTGRPDWSAAAQFLAEYLDVLDAQGVLDYAELVHRAVLLAERPE----VASRLAESYD 262

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             + +DE QDT   Q  ++ +LT +      T    RTL A GD  QSIY+F GA+   +L
Sbjct: 263  AVFVDEYQDTDPSQVRLLHALTGNRTAAPGT-GGGRTLIAFGDPDQSIYAFRGADVNGIL 321

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                  ++     G    +  L  S RS A +L     +       +  S+         
Sbjct: 322  DFPDTFRRF---DGAPAPVGVLTTSRRSGAQLLAATRLLTRRMPLTRLPSDKVRAHRELS 378

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---ARRIAYTISN 355
            ++R G  G V+ +    +  + +            D +P    A ++    R +      
Sbjct: 379  AAREG--GRVETYTYPTASTELENIADLLRRAHLEDGVPWRDMAVLVRAGGRSLPSVRRA 436

Query: 356  MIGTDTIFSNGKKRVIQAKDILV-----LVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            +             +    +  V      +R      L          +   +    D  
Sbjct: 437  LTSAGVPLEVDGDDLALRHEPAVAPLLTALRTVATAALRRPGDEAPGANALEAEAPGDGD 496

Query: 411  ILTDHLAIK-----------DLMALGRFILSQ--EDDLSFVCMLKSPLFNFSEDDIFKIC 457
              T                 D       + S     D + +  L   L +       ++ 
Sbjct: 497  GTTAPGEAPAPDTAEGTRPLDTETALTLLASPLGSMDAADLRRLGRALRDEERAAGNRLP 556

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKK 512
                E         +        +    + +  L+  A+       +  +    +     
Sbjct: 557  PPSGELLARALAEPERLVTHDPAYARGAQRLGALLRKARELLEGGGTAEEALWTLWDGTP 616

Query: 513  GRQQFIS------RFGNEVIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PT 560
               +           G      LD     F       E+         + E++       
Sbjct: 617  WPGRLERAALRGGAAGRNADRDLDAVCALFDAAARAEERTGGRGALNFLEEVDAQDIAAD 676

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                 S   + VR+MT H +KGLE  VV +      ++     +   +        G+  
Sbjct: 677  TLSRRSVRPDAVRLMTAHRSKGLEWRVVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAE 736

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
             +                   +   E  RL YV  TRA ++L++      +++     R 
Sbjct: 737  PLTPG----------------ALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRF 780

Query: 681  WYDM------------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
              ++               +        +    +    +                 + E 
Sbjct: 781  LTELGVEPRDVTGRPRRPLAVAALVAELRATTVDPAASEALRDAAAHRLARLAALTDDEG 840

Query: 729  TIKQLMDEQKIPKKLFSPIKNDI-----NEPYILNPSTIDT-KGKTNLESLLSDN----- 777
                          L  P ++++     + P +L+ S +D       L+  L        
Sbjct: 841  HPLVPAAHPYRWWGLNEPTRSEVPLRDRDHPVVLSGSALDQLANTCALQWFLGREVKADA 900

Query: 778  ---QTFNRGLIIHKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLS 827
                    G ++H L  +V            +            +A     +E      +
Sbjct: 901  PATAAQGFGNVVHVLADEVASGRTPADLDVLMERLDSVWNGLVFDAPWKSQQEKDQARDA 960

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTH 886
            + R L   +M  A       E +    +   +  + I G +D++    +   ++ ++KT 
Sbjct: 961  LERFLRWHVMDRAGRTPVAGEHAFDVTLEAGEYAVRIRGSMDRVEQDTEGRAYVVDFKTG 1020

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKD 913
               P + E        QL++Y+  +++
Sbjct: 1021 KAAPTKDEVAA---HPQLAVYQLAIRE 1044


>gi|207722204|ref|YP_002252641.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
           MolK2]
 gi|206587379|emb|CAQ17962.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
           MolK2]
          Length = 705

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 104/627 (16%), Positives = 189/627 (30%), Gaps = 130/627 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L    +    +R K    + + L+DE QDT+
Sbjct: 178 AALVYRNYVATLHAYQAVDFDDLIRIPAELFANNEA---VRLKWQNRLRYFLVDEYQDTN 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L         +H       AVGD+ Q+IY + GA    +   +        
Sbjct: 235 ACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNLKLLQTDFP---- 284

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +        +  S                  
Sbjct: 285 ----SLKVIKLEQNYRSTVRILNAANAVIAQNPKLFEKTLWS------------------ 322

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 323 -----------------EHGMGDAINVSGANDEEHEAESVVFK---------LSAHKFER 356

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      L   + R      +I  V +      D   IKDL A  R I 
Sbjct: 357 RAQFRDYAILYRGNFQARLFEQILR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 412

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E         K A   +   +
Sbjct: 413 NADDDPAFIRAVTTPKRGVGNATLEVLGAFAGQAKVSLFEAAMMGGIEAKLAPRQLEPLR 472

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLR 538
              ++I  L   A           ++G              R        + EFL++  R
Sbjct: 473 VFCEFIVRLSDRAAREPASTLLDEMMGGIHYEAYLYDTYDERQAQNKWTNVLEFLDWLKR 532

Query: 539 ---------------NEQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                           +          +L EL   +        +    + + VR+ T+H
Sbjct: 533 KGTKPENLEAEEATGYDNADGLMDSGKNLLELTQTIALISMLEGKED--DPDAVRLSTLH 590

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H                                      
Sbjct: 591 ASKGLEYPHVFLVGVEEGILPHCREDDDLT------------------------------ 620

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 EE  RL+YVG+TRA   L I         +++        + +   +D   +  
Sbjct: 621 --DEKIEEERRLMYVGITRAQRSLHITWCKKRKRARETVVCEPSRFIAEMKLDDGAGQTP 678

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLE 725
           + T      +              P  
Sbjct: 679 EDTMPAMSPKDRLGALKGLLAAKKPAA 705


>gi|146284345|ref|YP_001174498.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501]
 gi|145572550|gb|ABP81656.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501]
          Length = 1182

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 145/1037 (13%), Positives = 285/1037 (27%), Gaps = 155/1037 (14%)

Query: 8    SLNESYELIYKDLWPLPYFQV--SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            +   +     +  W         +       L    G      K+               
Sbjct: 199  APVAADLRPVEAAWQRAAELWKQAGTAWIAELLTHGGLSQSTHKSVKFAPWQAELDAYFA 258

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               +               +++   K       +L ++ DE              +    
Sbjct: 259  DPAVMFDLPEGAAKFGVRALSKACKKGFDAPVCELAQALDELADQVADALPAGKQRLIAL 318

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             + L + LN    E K    +L F+DL+   +  L+   V   +   +       LIDE 
Sbjct: 319  QVALLERLNRELPERKAAQRLLAFDDLLNRLDQALQGP-VGEDLAASLRATYPLALIDEF 377

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT  IQ+ +   +               +L  VGD KQ+IY+F GA+    +  K+   
Sbjct: 378  QDTDPIQYAIFNRIY--------AKGRDASLCFVGDPKQAIYAFRGADLATYMTAKQQ-- 427

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                          LP ++RST +++  ++++F  P+                  R    
Sbjct: 428  -------ADREPFNLPTNYRSTPELIAALNQLFDHPQPFAQPDLRYPPVGAADKPRAS-- 478

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS- 364
                          +  +               + +AS  ARRIA  ++        F  
Sbjct: 479  -----LRLAEEGEAAPLSLVWLGDDPLGKGDAAQLAASDTARRIAVQLAAAAEGRAGFDK 533

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
            +G    ++  DI VLV   +   +I            +  V   R  +       +L A+
Sbjct: 534  DGGFAPLKGGDIAVLVANHRQAGMIADELAA----RGVPSVRRGRDSVWRSEEAGELAAV 589

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
                     +      L + L   S  D+ +    +HE +   E  +++        Q  
Sbjct: 590  LAAYAEPGREGLLRHALATRLLGRSAADLARCQDDQHEWDAEREAAERYHQLWQQ--QGF 647

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            ++     +              +L    G ++  +         L E L      E    
Sbjct: 648  MRVFRAWLDEQ------AVAERLLARVDGERRLTNLL------HLGELLQA----ESLLR 691

Query: 545  SSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              L+ L++        E           ++   V+I+T+HT+KGLE P+VF         
Sbjct: 692  PGLEPLLAWFNAQRGSEGAGEEALLRLESDAERVQIVTIHTSKGLEYPLVFCPFLWDGKL 751

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              K+        +           P     +  + D ++  ++    E  RL YV +TRA
Sbjct: 752  LGKNQDSARCHDADG--------QPLLDLGSGELEDNLERARQEVFAEQLRLAYVALTRA 803

Query: 659  SDQLIICKHSNTSNEKKSNQR--------TWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             D+L +     +  + K +          +    +             +L N +      
Sbjct: 804  RDRLWLHWGPVSLPKAKKDGSLPDEGLHSSALAWLLHGRELPGEQPLTELGNHLASLNGG 863

Query: 711  AYEWSTHHPENT--------PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
            +   +      T        PLE  E   Q       P++L    ++  +   I + S +
Sbjct: 864  SLRLAIERLVATSDGRMACLPLESREASTQGSSRAAPPEQLAQLNRSLYSAWRIGSFSGL 923

Query: 763  DT---------------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                                       +  +    G  +H +L+          +    +
Sbjct: 924  AAGMHMEAPDRDALAMPDAGEPGSGFFAFPRGARAGTCLHAILEDWARGKGELAQLVEPA 983

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVS--------- 852
                 A   P          + R+L+  +      + + ++     E+  +         
Sbjct: 984  L---KAYGLPLDWRDVATAQLERVLQTDLDGAGLTLASLLAARRLPELGFTFPVRELDVV 1040

Query: 853  ---------------------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
                                  ++        + G ID         +I +YK++   P 
Sbjct: 1041 RLRALLTDPANGLAAPLREAAARLEFDSLKGFLKGFIDLTFEHGGRWYIADYKSNWLGPD 1100

Query: 892  E---------IEHIPYTHIAQLSIYEKILKDS-------YPNKSLVCLLIYV-----SEP 930
                             +  Q  IY   L+         + ++ L               
Sbjct: 1101 ASYYGGERLLQALAGEHYYLQYLIYLVALRRFLRQRLTDFRDEQLGGAFYLFLRGMPEAG 1160

Query: 931  KVFIIPQNKLNKAFAEI 947
              F  P + L      +
Sbjct: 1161 VYFARPDDALLDGLDRL 1177


>gi|28896815|ref|NP_796420.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838645|ref|ZP_01991312.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ3810]
 gi|260362654|ref|ZP_05775553.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus K5030]
 gi|260877719|ref|ZP_05890074.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AN-5034]
 gi|260895632|ref|ZP_05904128.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus Peru-466]
 gi|28805023|dbj|BAC58304.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149747973|gb|EDM58833.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ3810]
 gi|308088562|gb|EFO38257.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus Peru-466]
 gi|308089714|gb|EFO39409.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AN-5034]
 gi|308113730|gb|EFO51270.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus K5030]
 gi|328471594|gb|EGF42471.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus 10329]
          Length = 671

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 100/660 (15%), Positives = 222/660 (33%), Gaps = 125/660 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     LK+ L    +    +        M K       L  +   
Sbjct: 112 DQMALLKELTEKQLDGDKDLLKQLLSTISNWKNDMLTPEQAKAMAKGEQQ--QLFAFCFE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI+    LL+  +    +R +    I ++L+DE QDT+  Q+E+
Sbjct: 170 MYQKQMKAYNALDFDDLILLPVLLLRNNED---VRQRWQNRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +  +             L  VGD+ QSIYS+ GA+P+ ++   +             
Sbjct: 227 VKLIVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGQDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  + ++       +           A R+         T  + ++      + +D
Sbjct: 308 -------DGEKLKVLLAKN-------EEHEAERV---------TGELIAHKFLNRTEYRD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----MQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +   +++
Sbjct: 401 AFLRIVNTPRREIGPVTLEKLGSYANMRGKSLFEASFEMGLEQHLSGRGLENLRRFTQWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLR----- 538
             +   A+  +  +    ++                +     +  + +  ++ +      
Sbjct: 461 VAIADQAERGNTVEAVRSLVRDIHYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 -NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +Q    +L+E++  L       +     + + V++MT+H +KGLE P V+L+ +   +
Sbjct: 521 NYDQEE-KTLKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHASKGLEFPYVYLIGSEEGI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H+                                       +   EE  RL+YVG+TR
Sbjct: 580 LPHQTSID-----------------------------------EDNVEEERRLMYVGITR 604

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L            +  + T    + +   +D   +  K   S  +          +
Sbjct: 605 AQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWEVNKKPVSQEERMAKGQAHIAN 664


>gi|22124304|ref|NP_667727.1| DNA-dependent helicase II [Yersinia pestis KIM 10]
 gi|45442958|ref|NP_994497.1| DNA-dependent helicase II [Yersinia pestis biovar Microtus str.
           91001]
 gi|21957076|gb|AAM83978.1|AE013639_7 DNA-dependent ATPase I and helicase II [Yersinia pestis KIM 10]
 gi|45437825|gb|AAS63374.1| DNA helicase II [Yersinia pestis biovar Microtus str. 91001]
          Length = 722

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 101/552 (18%), Positives = 175/552 (31%), Gaps = 116/552 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 174 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 230

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  +             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 231 QYAWIRLLAGE----------RSNVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 274

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST+                               +         LW
Sbjct: 275 --GAETIRLEQNYRSTS---------------------IILAAANALIANNDGRMGKNLW 311

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S    F+ L +       AR +   I                  
Sbjct: 312 -------TDGAEGEPISLYCAFNELDE-------ARFVVNRIKAWQDNGGAL-------- 349

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++                        D   IKD +A  R I ++
Sbjct: 350 --NDCAILYRSNAQSRVLEEALLQTAT----PYRIYGGQRFFDRQEIKDSLAYLRLISNR 403

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++  +        A    S  Q  
Sbjct: 404 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQSTRAMLQEKVLAGRAASALQRF 463

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
           ++ I  L         H     ++        +    G +    I+ L+E +  T +   
Sbjct: 464 VELIDSLARETADMPLHVQTDRVIRDSGLWSMYEQEKGEKGQARIENLEELVTATRQYSY 523

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L             A  + V++MT+H+AKGLE P VF+V     +F 
Sbjct: 524 QDEDQDLMPLQAFLSHAALEAGDGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 583

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 584 SQMSLDEGG----------------------------------RLEEERRLAYVGLTRAM 609

Query: 660 DQLIICKHSNTS 671
            +L +C   +  
Sbjct: 610 QKLTLCYAESRR 621


>gi|258545690|ref|ZP_05705924.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
 gi|258519060|gb|EEV87919.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826]
          Length = 666

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 105/720 (14%), Positives = 234/720 (32%), Gaps = 130/720 (18%)

Query: 20  LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK-- 77
            W +          +           + ++ + L            F  L    L ++  
Sbjct: 42  AWLVRAAGYPANGIFALTFTNKAAREMGERVRALLGKEARGLHISTFHRLGLDILQKEHL 101

Query: 78  -FTPQKNIITQEINKKSPDLKEKLKKSQDE-FIKIRDRFNTYKMFKSTLASLT------- 128
               ++N    +    +  +KE  K+  +    +++ + + YK    + A+         
Sbjct: 102 AAGLRRNFTVFDARDGATLVKELSKQEDEAMVRQLQAQISAYKNANISAAAAKTLAQDEA 161

Query: 129 --LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             LA ++  HY++  +    +DF+DLI     LL++ +    +R +    + ++L+DE Q
Sbjct: 162 QVLAAHIYHHYDQRLRAYNAVDFDDLIALPLALLREHEA---VRERWQHRVRYLLVDEYQ 218

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ +++ L            +     AVGD+ QSIY++ GA P+ +         
Sbjct: 219 DTNDCQYALLQLLAG----------AGAAFTAVGDDDQSIYAWRGARPENIAHLHEDYPA 268

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      ++L  ++R    IL   + + +   +                       
Sbjct: 269 --------LKTVKLEQNYRCHQQILAAANTLIANNPHVVEKK------------------ 302

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              LW ++ +                   +    S    A +I   I         +   
Sbjct: 303 ---LWSELTAGEGV--------------HVICARSDEAEAEQIVQDI---------YLRK 336

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            +   +  D  +L R            R L     +    +      +H  I+DL+   R
Sbjct: 337 IRDNKKNSDFAILYRSNFQARTFEQQLREL----SLPYKISGGTSFFEHSEIRDLLGYLR 392

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI---CTQRHETETVYEYIQKFANCGISK--- 480
            I + +DD +F+ ++ +P        + K+     +RH   +V      FA+    K   
Sbjct: 393 LINNPDDDAAFLRVVNTPKREIGAATLAKLGEYAARRHVALSVAAAEVGFAHEIGGKPYQ 452

Query: 481 -FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-----ISRFGNEVIDVLDEFLN 534
             Q  I+++  +    +   P +    ++   +                     + +   
Sbjct: 453 NLQTFIQWLQTMQRDGESEPPLEILNRVINDIEYDDYLFELHKAPAKIEVRQKRISQLRA 512

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
           +  + ++  + +L  L+  L       ++      + +++MT+H+AKGLE PVV++    
Sbjct: 513 WIAKLQEERFETLDGLMQHLTLLDILDRQEQEE--DAIQLMTLHSAKGLEFPVVYIAGCE 570

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            ++  H++                                         + E  RLLYVG
Sbjct: 571 EELLPHRNSMD----------------------------------NDDGEREERRLLYVG 596

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA + L++          +         + +   +  +    +       ++    ++
Sbjct: 597 MTRAKETLLLSYAKARRRGAELQTTEPSRFLDELPADGVQWHDGRTPPDPVIEQKKNEDF 656


>gi|313200859|ref|YP_004039517.1| uvrd/rep helicase [Methylovorus sp. MP688]
 gi|312440175|gb|ADQ84281.1| UvrD/REP helicase [Methylovorus sp. MP688]
          Length = 665

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 100/636 (15%), Positives = 210/636 (33%), Gaps = 118/636 (18%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           K+ L+++Q +  + ++ F        ++       A  +   Y++  K    +DF+DLI 
Sbjct: 128 KQLLRRTQSQISQWKNAFINPDQAKAQADEELTHAAAKVYQLYQQTLKAYQAVDFDDLIK 187

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
              +L ++   +     K  +++ ++LIDE QDT+  Q+++++ LT              
Sbjct: 188 LPVELFEQHREA---LEKWQRKLKYLLIDEYQDTNACQYKLVKLLTG----------VEG 234

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ Q+IY + GA+ + + +      +          +I+L  ++RST  IL   
Sbjct: 235 RFTAVGDDDQAIYGWRGADVENLRQLTEDFSR--------LKVIKLEQNYRSTVRILRAA 286

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           ++V +                              LW ++ +                  
Sbjct: 287 NQVIANNPKLFDKK---------------------LWSELGTGD--------------LI 311

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +         A  +            + ++  +   Q  D  +L R      +     R
Sbjct: 312 QVSAARDEDHEAESVVMK---------LMAHKFEHRTQFSDYAILYRGNHQARIFEQQLR 362

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
               ++K+    +      D   IKDL+A  R I +++DD +F+    +P        + 
Sbjct: 363 ----NHKVPYTVSGGQSFFDKAEIKDLVAYLRLIANEDDDPAFIRAATTPKKGIGNTTLE 418

Query: 455 KI-CTQRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           ++    R    +++         ++     +       +YI+ +   A      +    +
Sbjct: 419 RLGEYARDHHLSLFAAAFEGDFQRELGARQLEDLLTFCQYINRVQERATRDPAGEMLNDM 478

Query: 508 LGAKKGRQQFISRFGNEVID----VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           L A +              +     + +F  +  +       +L EL   +        R
Sbjct: 479 LNAIQYEAFLYDSEEPRAAESKWKNVLDFTGWLTKKGNEDEKNLLELTQMISLMSMLEGR 538

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
            +    + V++ T+H AKGLE   VFL+     +  H                       
Sbjct: 539 ENGE-PDAVKLSTLHAAKGLEFGHVFLIGCEEGILPH----------------------- 574

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                        + +     EE  RL+YVG+TRA   L I          ++       
Sbjct: 575 ------------RESIDTDRIEEERRLMYVGITRAQKSLNISWCRKRKRAGETESCEPSR 622

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            + +  H+D +   +  ++     E      +    
Sbjct: 623 FIAELPHDDVKHFGMPASDPAAAKENGRERMAQIRA 658


>gi|170719393|ref|YP_001747081.1| ATP-dependent DNA helicase Rep [Pseudomonas putida W619]
 gi|169757396|gb|ACA70712.1| ATP-dependent DNA helicase Rep [Pseudomonas putida W619]
          Length = 669

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 97/634 (15%), Positives = 208/634 (32%), Gaps = 125/634 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  +        A  +  HY+   K    +DF
Sbjct: 129 DDGIDEIKNMIGAWKNDLILPAEALEKARNPRE-----QTAAIVYTHYQRTLKAFNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  +    + ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILQPVKLFQEHPE---VLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGM------- 233

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                    VGD+ QSIY++ GA P+ ++  K               I+ L  ++RST+ 
Sbjct: 234 ---RNQFTVVGDDDQSIYAWRGARPENLMLLKEDYP--------SLKIVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + +   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLIANNPHAFEK---------------------QLWSEMGVGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCKNEEAEAERVAMEILTLH---------LRTNRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +++ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y   ++             + Q    ++  + H      P  
Sbjct: 415 STTLEKLGNYATERGVSMYAASEELGLGEHLDARYTERLQRFKHWLDGVRHKVALEDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++           +  ++      I  +   +      L  ++    ++++ I +L
Sbjct: 475 ALHEMIRDIDYENWIRQQTASDKAAEFRISNVWFLVEALKNTLEKDEEGDMTIEDAIGKL 534

Query: 555 EQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                   ++    N   V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            +    T    + +   +D   + +       K 
Sbjct: 620 GEIIDCTPSRFLDELPPDDLAWEGLDDAPVEVKA 653


>gi|257488080|ref|ZP_05642121.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tabaci
            ATCC 11528]
 gi|331013532|gb|EGH93588.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tabaci
            ATCC 11528]
          Length = 1230

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 126/1004 (12%), Positives = 278/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +     E          LT +   +        +           ++  +    
Sbjct: 272  EKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAF--------EAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDSLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HSAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEGNDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRTQGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA   A
Sbjct: 485  FLFRNDQGNQVPFSDALAQGRKETLEDDGAPLTALTVWHLESEQPVSGVIYRQQLAASCA 544

Query: 351  YTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++             +   R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFAMLDKPLRGLRPADIAILVRDGKEAQAVRQQLSA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWERRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +  +                +   LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADGNSQISLQ----------LTEALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      SN       +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNASNSMLHRSALGYLLGGGVALAESAEL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD-----------EQKIPKKLFSPIKND 750
                +D     +     P   P +   +  +                +            
Sbjct: 877  KVWLRDLAQGCDAIALQPVPEPTDERFSAPRNEAALVKLLVPKRCAAENWWIASYSALRI 936

Query: 751  IN------EPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
             +      +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTTGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  -------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                   +      K ++ +   C +           + L  +  + L          + 
Sbjct: 997  AGNEGFAVTAHAPDKLQDAVARRCNRRGWAGWINTLSDWLQHMLNMPLRLSPDATPVALG 1056

Query: 839  TAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQIS 872
                 + Y  E+     S  +N  + D ++                       G ID   
Sbjct: 1057 ELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +  +         +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGTDDTAYTELAMETAILDNRYDLQYVLYLLALHRQLKARMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F+ P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSVSQGAYFVRPPRELIESLDLLFQGKP 1220


>gi|118497381|ref|YP_898431.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella tularensis
           subsp. novicida U112]
 gi|195536071|ref|ZP_03079078.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|254372746|ref|ZP_04988235.1| ATP-dependent DNA helicase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|118423287|gb|ABK89677.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella novicida
           U112]
 gi|151570473|gb|EDN36127.1| ATP-dependent DNA helicase [Francisella novicida GA99-3549]
 gi|194372548|gb|EDX27259.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 671

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 102/617 (16%), Positives = 190/617 (30%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 138 QAKISFWKSALLTPDEVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 198 ---SNIQKLWADKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 297 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 321

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 322 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        I K+     + 
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATIHKLGEYASQH 428

Query: 464 ETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +          +             I           S  +        +     
Sbjct: 429 HCSFFHTLYSLENFELRDFTKRNLVSFKDLILNTQQQINTSISVQELKNIINSFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 634 IDELPETDLYWVGTEKE 650


>gi|239993847|ref|ZP_04714371.1| ATP-dependent DNA helicase Rep [Alteromonas macleodii ATCC 27126]
          Length = 671

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 112/723 (15%), Positives = 237/723 (32%), Gaps = 141/723 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +       P  +   ++ + ++ +      +      L+        ++ F+
Sbjct: 59  AAREMKERV-AQTLGKPEARGLKVSTFHTMGLTIIKAHVKDLG--LKPGFSLFDDKDSFA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF--KSTLA 125
           LL+               T +         ++L+  Q      ++           +T  
Sbjct: 116 LLNDL-------------TSDTLDGDK---DQLQLLQSCISNWKNDLILPDALLKSATST 159

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                      Y++  K    LDF+DLI+    LLK  +    IR K   +I ++L+DE 
Sbjct: 160 GEREFAEAYKRYQDNLKAYNALDFDDLILLPTLLLKSSEA---IRAKWQSKIRYLLVDEY 216

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+++ L  +                VGD+ QSIYS+ GA+P+ +   ++   
Sbjct: 217 QDTNTSQYELVKLLVGE----------RARFTVVGDDDQSIYSWRGAKPQNLHLLQQDFP 266

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +         ++I+L  ++RS+  IL   + +     +                      
Sbjct: 267 R--------LNVIKLQQNYRSSGRILHCANILIQNNPH---------------------- 296

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               L+++ +        P +       +   +   A +LA                  +
Sbjct: 297 ----LFDKTLFSELQYGEPLKVIEAKNEEHEGERVVAELLA------------------H 334

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 Q KD  +L R    + +       L    +I    +          +KD+MA  
Sbjct: 335 KFMNRTQFKDYAILYRGNHQSRIFEK----LLMSNRIPYKISGGMSFFGRAEVKDIMAYL 390

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGI 478
           R +++Q+DD + + ++ +P        + K+         +++E            +   
Sbjct: 391 RLLVNQDDDNALLRIINTPGRGIGRATLEKLGNFANSLGVSMFEAATHPNLNSVLPDKAF 450

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFL 533
                  ++I EL   A+  +  D    ++      +         +     +  +    
Sbjct: 451 HSVSTFARWIVELSDNAERGNTADAVRTMIRTMGYEEWLYETSASPKAAEMAMANVSTLF 510

Query: 534 NFTLRNEQNS----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +     + +      +L E+++ L       +       ++V++MT+H +KGLE P+VF
Sbjct: 511 GWVNDMLEGNDLDQPMTLTEVVNRLILRDMMERGEDDGEGDQVQLMTLHASKGLEFPIVF 570

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           LV     +  H+                                       +   EE  R
Sbjct: 571 LVGMEEGLLPHQSSID-----------------------------------EDNVEEERR 595

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA  +LI           +         +++   +D + +  K   +  + + 
Sbjct: 596 LAYVGITRAQRELIFSLAKERRQFGEVINPEPSRFLFELPPDDVQWENQKPKATKEERQQ 655

Query: 710 IAY 712
            A 
Sbjct: 656 KAQ 658


>gi|186477746|ref|YP_001859216.1| UvrD/REP helicase [Burkholderia phymatum STM815]
 gi|184194205|gb|ACC72170.1| UvrD/REP helicase [Burkholderia phymatum STM815]
          Length = 731

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 98/576 (17%), Positives = 190/576 (32%), Gaps = 127/576 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L K+ +    +R +   ++ ++LIDE QDT+
Sbjct: 211 AAIVYRNYVATLHAYQAVDFDDLIRLPAELFKQNE---QVRDRWQNKLRYLLIDEYQDTN 267

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L            +     AVGD+ Q+IY + GA  + + +  +   +   
Sbjct: 268 ACQYELVKLLAG----------TRAAFTAVGDDDQAIYGWRGATLENLAQLSKDFPR--- 314

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S                  
Sbjct: 315 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWS------------------ 351

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 352 -----------------EHGMGDSITVTGCNDEEHEAESVVFR---------LSAHKFER 385

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 386 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDICAYLRLIA 441

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   +   +
Sbjct: 442 NADDDPAFIRAITTPRRGVGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 501

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLR 538
               ++  L   A   +       ++ A          F           + EFL +  R
Sbjct: 502 VFCDFMQRLRDRADKDAATSVLNDMMEAIHYEAYLYDAFDERQAQAKWQNVLEFLEWLKR 561

Query: 539 ----------NEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHTA 580
                      EQ  Y +   L          ++           + + + VR+ TVH +
Sbjct: 562 KGTKPEPEAGAEQTGYDTADGLADTGKNLLGLIQTVALMSMLEGKNEDPDAVRLSTVHAS 621

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE P VFLV     +  H+                               ++    + 
Sbjct: 622 KGLEYPHVFLVGVEEGIMPHRGG-----------------------------AEDDGPID 652

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
               EE  RL+YV +TRA   L +         +++
Sbjct: 653 DERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 688


>gi|134302295|ref|YP_001122264.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050072|gb|ABO47143.1| ATP-dependent DNA helicase/UvrD/REP helicase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 671

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/617 (16%), Positives = 191/617 (30%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 138 QAKISFWKSALLTPDQVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 198 ---SNIQKLWADKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 297 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 321

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 322 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        + K+     + 
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATVHKLGEYASQH 428

Query: 464 ETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +        +  +            I           S  +        +     
Sbjct: 429 HCSFFHTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 634 IDELPETDLYWVGTEKE 650


>gi|312794911|ref|YP_004027833.1| ATP-dependent DNA helicase rep [Burkholderia rhizoxinica HKI 454]
 gi|312166686|emb|CBW73689.1| ATP-dependent DNA helicase rep (EC 3.6.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 714

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 100/633 (15%), Positives = 191/633 (30%), Gaps = 151/633 (23%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  HY         +DF+DLI    +L +  +    +R K    + ++L+DE QDT+
Sbjct: 174 AAIVFRHYAATLHAYQAVDFDDLIRLPTELFRDNE---PVRDKWQNRLRYLLVDEYQDTN 230

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + + +    +   
Sbjct: 231 TCQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLQVDFPR--- 277

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +           S           G   T+ 
Sbjct: 278 -----LKVIKLEQNYRSTVRILNAANSVIAQNPKLFEKKLWSEH---------GMGDTIT 323

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 324 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 348

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 349 RTQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDRAEIKDICAYLRLIA 404

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 405 NHDDDPAFIRAITTPRRGVGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSPRQVEPLR 464

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNF--- 535
               +I  +   A           ++ A             R        + EFL +   
Sbjct: 465 VFCDFIQRIAARAGTDPATTLLDDLMEAIHYEAYLYDAFDERQAQTKWTNVLEFLEWLKK 524

Query: 536 -------------------------------TLRNEQNS-----YSSLQELISELEQYPP 559
                                              E          +L  LI  +     
Sbjct: 525 KGTKPERDATLGGSGTPRGEDADDDDDDEQHAYGYENADGLADTGKNLLGLIQTVALMSM 584

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              +    + + VR+ TVH +KGLE P VFLV     +  H+       +          
Sbjct: 585 LDGKD--EDPDAVRLSTVHASKGLEYPHVFLVGVEEGILPHRGGADDEPIDD-------- 634

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                                 +  EE  RL+YV +TRA   L +         +++   
Sbjct: 635 ----------------------ARIEEERRLMYVAITRAQRSLHLNYCKKRKRARETLVC 672

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
                + +   +D             KD   + 
Sbjct: 673 EPSRFIAEMRLDDAPPPTPDEAPMTPKDRLASL 705


>gi|301156242|emb|CBW15713.1| exonuclease V (RecBCD complex), beta subunit [Haemophilus
            parainfluenzae T3T1]
          Length = 1226

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 134/962 (13%), Positives = 306/962 (31%), Gaps = 137/962 (14%)

Query: 32   NKYVSLSMETGNPTILKK-AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEIN 90
            ++  SLS  +     LK   + + + +      E    L  +FL      +    T++  
Sbjct: 271  DQLTSLSRRSYQKERLKTWIEQINEWANNPLDYEIHETLRKYFLQSSIEQKYEKPTEKT- 329

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            K             +E  ++  +  +  + K  +      + +     E K  +    F+
Sbjct: 330  KNKKAAIPFYAPIFEELEELVAKHQSSDLLKKII-LYHYRQGIQKKLLEYKANHPEKSFD 388

Query: 151  DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
            DL+    + L   +    +   I  +    +IDE QDT  +Q+++   +  +        
Sbjct: 389  DLLRLLKEAL-HGEGGEQLAELIRFQYPFAMIDEFQDTDALQYQIFSKIYHNETA----- 442

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
            S       +GD KQ+IY F GA+    L+  +   +R            L +++RS+  +
Sbjct: 443  SGNVGFMMIGDPKQAIYRFRGADIFTYLKAAKEANERFN----------LGINYRSSQPL 492

Query: 271  LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
            +  V+++F           ++   +   +++            +V Q ++Q  P    + 
Sbjct: 493  VDGVNRLFD--FKNDPFIYENIEFLNVGAAKKN----------LVFQLNNQPEPAFRFYI 540

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFS---NGKKRVIQAKDILVLVRKRKDTP 387
            +  D   Q+  A   A  I   + +      +F      + + ++A++I VLVR   +  
Sbjct: 541  NDKDESTQQDYAKACATSIQQWLKSAAENPIVFPNESKAENQTLRAENIAVLVRGYTEAD 600

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            L+    + L      SV  +DR  + +    K+L  + +  LS   +   +  + + LF 
Sbjct: 601  LVKKELQALGIA---SVYLSDRGNVFESNTAKELALILQACLSVT-ERPILNAIATALFG 656

Query: 448  FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             +  +I +I     + +   E   ++        Q + +    L  +       +    +
Sbjct: 657  LNAAEIHQIHQDEIQWQRWAEKFAEY--------QQIWQRQGVLPMLHHLLLAENITEKL 708

Query: 508  LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHS 566
            L    G ++            L E L       ++  + L+    ++ ++     +    
Sbjct: 709  LSRPDGERKLTDLL------HLAEILQQAAALNESEAALLRWFEKQIQDEGRQEAQIRLE 762

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +    V+I+T+H +KGLE  +V+L   G++        K   +        +     + K
Sbjct: 763  SERQLVKIVTIHKSKGLEYDLVWLPFLGNEAKDPTKSGKQKKLF------NLYYDSDEEK 816

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ----------------LIICKHSNT 670
            +  ++    +  L +    E  RLLYV +TRA  Q                L +      
Sbjct: 817  TLWDMQDQHLDELTEEVFAEELRLLYVALTRAKYQMAFVLPKAFDKKWNALLYVLTQGEI 876

Query: 671  SNEKKSNQRTW-YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
              +           ++            I+LT+ +   E +    S  +        E  
Sbjct: 877  GRKLDLPNNWDTQPVLEKFKQLLPNDVAIELTDVLQASEPLTLNVSQENLSAETFRGEIE 936

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILN------------------PSTIDTKGKTNLE 771
                +      ++               +                  P  +      N E
Sbjct: 937  QDWRVTSFSGIEQTHQRKAYLNESAVKKSLIFDDAKDYDASISTENIPENLTALAHDNDE 996

Query: 772  SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
             +L   +    G ++H+  + +      +++N               +++  +     ++
Sbjct: 997  MVLDFPRGTQIGTLLHRYFEKVPFAQLAEKENIEKLC---QDLNLAEEQFVAVQYWFAQI 1053

Query: 832  LENP-------MMTTAMSCDSYSEVSV------------------------SGKINCPKK 860
            L  P        +          E++                         S  +     
Sbjct: 1054 LSTPILPNDDFTLAQINEKQCLKELAFYLNITSHFDVTGFNRALSTLHHLPSEPLQFDDI 1113

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVP--QEIEHIP-------YTHIAQLSIYEKIL 911
              ++ G ID +   Q   ++ +YK++      ++ +          + +  Q  +Y   L
Sbjct: 1114 QGMVRGTIDLVFSHQDKYYLLDYKSNFLGEILKDYDQAALKKAMLEHHYDWQYLLYVVAL 1173

Query: 912  KD 913
              
Sbjct: 1174 HR 1175


>gi|330431031|gb|AEC16090.1| exonuclease V beta subunit [Gallibacterium anatis UMN179]
          Length = 1199

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 144/899 (16%), Positives = 287/899 (31%), Gaps = 141/899 (15%)

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            +L     E      +F+     +           L     E +  +    F+DL+    D
Sbjct: 303  ELPTFVVEMEHFLQQFSQNDFCQKMHYLY--VAELRQRIFEYQDNHNEKQFDDLLRMLRD 360

Query: 159  LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            +L+K      I   I Q+    +IDE QDT  +Q  +   +          + +      
Sbjct: 361  VLQKPSAHKLIAL-IRQQYPFAMIDEFQDTDPVQLAIFSKIYLQAVT----NETTTGFTV 415

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            +GD KQ+IY F GA+    L  K      +        I  L  ++RS+A ++  ++ +F
Sbjct: 416  IGDPKQAIYRFRGADIFTYLSIKD----SSEQHQAIEHIYTLQRNYRSSAKLIESINNLF 471

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
               +N      D    I   +++      V+               +            +
Sbjct: 472  LNAKNP--FYLDEIEFIPVEAAQQTSAFYVE-----------GQAQKAWQLLQLAQDENK 518

Query: 339  ESSASILARRIAYTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
              +  I+A+  A  +  ++               +++ + AKDI +LVR  K++ +I   
Sbjct: 519  SVTMEIMAQAFASHLQQLLIASQQGNAYFCADGQEQQAVSAKDIAILVRNGKESDIIR-- 576

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
             R L      SV  ++R  +   +A KDL  + R  L+  ++ + +  +   L+  + D 
Sbjct: 577  -RALTQKGIASVYLSERSNVFTSVAAKDLYRILRACLTPFNERAVLAAVGCTLWGLTADQ 635

Query: 453  IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
            I+++     E   + E +  +     +  Q V+  +++L          +   L L    
Sbjct: 636  IYQLKQNETEWAALIERLLHYQTVWQT--QGVLPMLYQLFQ-------AEQIPLRLQQFD 686

Query: 513  GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE--QYPPTIKRAHSANHN 570
              ++++          L E L   +  +QN  + L     +L         +       N
Sbjct: 687  FSERYLVDLL-----HLSELLQQAMNQQQNEEALLNWFELQLSGNSDNEENRLRLEREQN 741

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
             V I+T+H +KGLE P+V L    +   + K                      Q +   +
Sbjct: 742  VVSIITIHKSKGLEYPLVCLPFILNSASNRKETFG-------------FYHDEQKQLVWD 788

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS------NTSNEKKSNQRTWYDM 684
            +     + +++  + E  RLLYV +TRA  QLI+   +      N S +  S + T  D 
Sbjct: 789  LHHQQTEKVEQEAKAEEMRLLYVALTRAKYQLIVGVPATFNAINNKSRKWDSKKLTALDY 848

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT-----PLEREETIKQLMDEQKI 739
            +          K++  T  + K     YE       +       +     +      Q I
Sbjct: 849  LLLGGQQHAEQKEVSYTTLLTKTLVDNYEIQKVTEADDMRFQMKVVTPSHLSARQFHQNI 908

Query: 740  PKKLFSPIKNDINE-------------------------PYILNPSTIDTKGKTNLESLL 774
             K       + +                                PS +         +  
Sbjct: 909  EKNWRVTSFSALQAKLQALYGEHLSDNAQDYSDNAIEIDDEETAPSVMPLSIYPPHFTPF 968

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
               +    G ++H  L+ +      K  +  T            +  + L +  + +L+ 
Sbjct: 969  DLPKGAGVGSVLHAFLEKLDFTQPLKTPSLQTLC---QYLGLDEQWLEPLRIWFSNILQQ 1025

Query: 835  PM-----MTTAMSCDSYSEVSVSG--------------------------KINCPKKDII 863
            P+     +    S D  +E+                               +   +   +
Sbjct: 1026 PLPEMGCLANVASTDKLTEMQFYLKLGNLFNQQQFNQILSQYHPLYDQQHPVQIEEIQGV 1085

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIP-----YTHIAQLSIYEKILKD 913
            I G +D +       ++ +YK++         + E +        +  Q  IY   L  
Sbjct: 1086 IRGFVDLVVRQNGKYYLIDYKSNFLGDGIEYYQPEKLAKAISSQRYDLQYLIYSLALHR 1144


>gi|117918831|ref|YP_868023.1| ATP-dependent DNA helicase Rep [Shewanella sp. ANA-3]
 gi|117611163|gb|ABK46617.1| ATP-dependent DNA helicase Rep [Shewanella sp. ANA-3]
          Length = 671

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 104/648 (16%), Positives = 211/648 (32%), Gaps = 123/648 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K +  +E+ +    LK       +    +       K+ K       L   L   Y +  
Sbjct: 118 KELTQKELQEDKDLLKALAGAISNWKGGLIIPDQARKLAKDEQQ--QLFAMLYQRYAQHM 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    LDF+DLI+    LL+  +    +R +   +I ++L+DE QDT+  Q+E+++ L  
Sbjct: 176 KAYNALDFDDLILLPTLLLRHHEE---VRTRWQTKIQYLLVDEYQDTNTSQYEMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA+P+ ++   +   K          +I+L 
Sbjct: 233 E----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPK--------LKLIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +    S  S           G+   V             
Sbjct: 275 QNYRSSQRILRAANILIANNPHVYDKSLFSE-------LAYGEPMRVLF----------- 316

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                             ++    A R+   I           +      Q  D  +L R
Sbjct: 317 -----------------AANEEQEAERVVAEIIR---------HKFVGRTQFGDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+           +I    +          IKD+M   + +++ +DD +F+ ++
Sbjct: 351 GNHQSRLLERAL----MTNRIPYKLSGGTSFFARAEIKDIMGYLKLVVNPDDDNAFLRVV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHI 494
             P        + ++      +  +++E I              S      ++I +    
Sbjct: 407 NLPKRGIGPSTLERLGNFANEKHISMFEAIFDPDLNHHLPPNAMSALYQFGRFIVDTGEH 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLRN----EQNSYS 545
           A+   P +    ++               ++     +  + E   +        E +   
Sbjct: 467 AERGEPVEAVKQLIRKINYEDYLYETSTSAKAAEMRMKNISELYRWVTEMLSGDELDEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L E+++ L       + +     ++V++MT+H +KGLE P VF+V    ++  H+    
Sbjct: 527 TLPEVVNRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPYVFMVGVEERILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              +   +E  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVDEERRLAYVGITRAQRELWFT 611

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                  +     R            D+ + + +      ++      
Sbjct: 612 -LCRERRQFGETMRCEPSRFLHELPQDDLIWENRKPQQTEQERMQTGR 658


>gi|186893517|ref|YP_001870629.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis PB1/+]
 gi|186696543|gb|ACC87172.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis PB1/+]
          Length = 673

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/662 (15%), Positives = 211/662 (31%), Gaps = 121/662 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ +    +    + D        +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLVSAISNWKNDLLDPAAAAATARSERD--KLFVHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+K      +R +    + ++L+DE QDT+  Q+++++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQKN---LEVRERWQNRLRYLLVDEYQDTNTSQYQMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA P+ ++                  +I+L 
Sbjct: 233 N----------RARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPA--------LRVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S                              
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E        +   ++    A R+            + ++   +  Q  D  +L R
Sbjct: 305 -----ELSYGDELKVITANNEDHEAERVV---------GELIAHHFVKKTQYSDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        + K+        ++++               G+   Q    ++  +I +
Sbjct: 407 NTPKREIGAATVQKLGEWANLRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWMDGIIRL 466

Query: 495 AQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLR----NEQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E +   +
Sbjct: 467 VEREPVAAVRDLIHGIDYESWLFETAPSPKAAEMRMKNVNLLFSWMTEMLEGAELDEPMT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D   +  +   S  +          +        +
Sbjct: 612 CKERRQYGELIRPEPSRFLMELPQDDLNWENERKAVSPEERMQKGQSHLANLRAQLANAK 671

Query: 727 EE 728
           + 
Sbjct: 672 KP 673


>gi|254369409|ref|ZP_04985421.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122359|gb|EDO66499.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 671

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/617 (16%), Positives = 191/617 (30%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 138 QAKISFWKSALLTPDQVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 198 ---SNIQKFWADKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 297 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 321

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 322 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQIHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        + K+     + 
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATVHKLGEYASQH 428

Query: 464 ETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +        +  +            I           S  +        +     
Sbjct: 429 HCSFFHTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 634 IDELPETDLYWVGTEKE 650


>gi|187925846|ref|YP_001897488.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187717040|gb|ACD18264.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 696

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 100/621 (16%), Positives = 196/621 (31%), Gaps = 130/621 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L +K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AAIVYRNYVATLHAYQAVDFDDLIRLPAELFEKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELVKLLAGKRAA----------FTAVGDDDQAIYGWRGATLENLGQLSKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   T+ 
Sbjct: 279 -----LHLIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDTIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  +L R      +   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 350 RANFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDICAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           +  DD +F+  + +P        +  + +   +   +++E +       + +   I   +
Sbjct: 406 NANDDPAFIRAITTPRRGVGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSPRQIEPMR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNF--- 535
               ++  L   A+  +       ++ A             R        + EF+ +   
Sbjct: 466 VFCDFMQRLTDRAEKDAAGTLLDELMDAIHYEAYLYDAFDERQAQSKWQNVLEFMEWLKR 525

Query: 536 ---------TLRNEQNSYSSLQELISE-------LEQYPPTIKRAH-SANHNEVRIMTVH 578
                       +E   Y +              ++             + + VR+ TVH
Sbjct: 526 KGTKAEPAGAANDEATGYDTADGFGDTGKSLLGLIQTVALMSMLEGREEDPDAVRLSTVH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+       +                             
Sbjct: 586 ASKGLEYPHVFLVGVEEGIMPHRGGPDDEPIDD--------------------------- 618

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
              +  EE  RL+YV +TRA   L +         +++        + +   +D      
Sbjct: 619 ---ARIEEERRLMYVAITRAQRSLHLNWCKKRKRARETVVCEPSRFIPEMLLDDAPPPTP 675

Query: 699 KLTNSINKDEWIAYEWSTHHP 719
           +      KD   + +     P
Sbjct: 676 EEAPMSPKDRLASLKALLQKP 696


>gi|311898256|dbj|BAJ30664.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
          Length = 1073

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 141/1023 (13%), Positives = 276/1023 (26%), Gaps = 197/1023 (19%)

Query: 38   SMETGNPTILKKAQTLQQASQTQCIEE-RFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
             +          A+ L+QA          FS L +  +       ++++     ++  + 
Sbjct: 132  RLLADATRFQLAARVLRQARGPFPALTGTFSALVAELVALDSELAEHLVEPARLREHDE- 190

Query: 97   KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
             E L +     +   D     K  +     L L       Y   K+K  +LDF D I  +
Sbjct: 191  -ELLDQLAGVKLTNDDLRAVPKAARGRQELLRLV----EDYRARKQKLGLLDFGDQIAAS 245

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
              L ++      +   + ++   +L+DE QDTS+ Q  ++  L            +   +
Sbjct: 246  ARLAQQ---RPEVGRLLREQYRVVLLDEYQDTSVAQRLMLAGLFG------GESGAGHPV 296

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             AVGD  Q+IY + GA    +    R         G       L  + RS   +L + ++
Sbjct: 297  TAVGDPCQAIYGWRGASVANLDDFPRHFP---LADGGPAHRFALSENRRSGGRLLDLANR 353

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
            +       + + E          +       V L     ++ D                 
Sbjct: 354  L---ATPLRAMHEGVEALRPAPGAERDGSARVALLPTHAAEID----------------- 393

Query: 337  PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                        +A +I++++ T T              I VL R     P I       
Sbjct: 394  -----------WLADSIAHLVRTGTA----------PGRIAVLCRAGGSFPDIHAALVER 432

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
            K    + V       L     + DL+A+   +     + + V +L  P +     D+  +
Sbjct: 433  K----VPVEVVGLGGLLQLPEVADLVAVCEVLQDPTANAALVRLLIGPRWRTGPRDLALL 488

Query: 457  CTQRHETETVYE-----------------------------------YIQKFANCGISKF 481
              +  E                                             F+     +F
Sbjct: 489  GRRAAELVRTARPGEQDALSAAVAETDPTEVVSLADALETFVDAEQPDDLPFSPEARVRF 548

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLR 538
                + I EL   A      D    +L A     +  +          + L  FL+    
Sbjct: 549  ARFAREIRELR-RALAEPLMDVLHRVLTATGLEVELSASPLALAARRRETLHSFLDIAAS 607

Query: 539  NEQ-NSYSSLQELISELEQYPPTIKRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                +    L   +  L       +   +      + V+++T H +KGLE  VV +    
Sbjct: 608  FADLDGDPGLAAFLGFLRAAQEYERGLDAGLPGGEDTVKVLTAHKSKGLEWDVVAVPGLV 667

Query: 595  SQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
               F  K  +        ++P         +    +     +     + + +    E  R
Sbjct: 668  KGAFPSKKGRDSWTSTRKVLPHALRGDAATLPADPAWDAKGLGR-FKQEMTEHAGVEELR 726

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY--DMVYDSFHNDERVKKIKLTNSINKD 707
            L YV  TR    L+   H     +K     + +   +            +         +
Sbjct: 727  LGYVAFTRPRTLLLASGHWWGPTQKTRRGPSDFLTALREHCERPGNGEIEHWAEPPGKDE 786

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY------------ 755
            +  A + S   P   PL+ +    +    Q +  +L      +                 
Sbjct: 787  KNPALDVSVETPWPLPLDPDAQRARRRVAQVVRHRLAGAPAPEGEPMAVEDQRLLASWDR 846

Query: 756  ---------------ILNPSTIDTKGKTNLESLLSDNQTFNR----------------GL 784
                             +     +   T L  L +D   F R                G 
Sbjct: 847  DLTALLGELERSRRTTRDVELPASLSATQLMRLAADPDGFARDLARPMPRPPAPAARRGT 906

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
              H  +Q  +  P                 L    E +         L++  +    +  
Sbjct: 907  RFHAWVQSRYDQP----------LLLGPEALPGLDEEEIEDERDLERLKDAFLRGPYAR- 955

Query: 845  SYSEVSVSGKINCPKKDIIISGRIDQISISQQ-----------------NIFIFEYKTHH 887
              +  +V           ++ GRID +  + +                    + ++KT  
Sbjct: 956  -RTPYAVEAPFQLVLAGRVVRGRIDAVYRAAEGGAGGAGGAGGAGAGAPRYEVVDWKTGR 1014

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYP--NKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
                +          QL++Y     +      + +     YV   +V         K  +
Sbjct: 1015 EDSGDP--------LQLAVYRLAWAEQAGVAVEEVAASFCYVRSGRVETPSGLPGRKELS 1066

Query: 946  EIS 948
            ++ 
Sbjct: 1067 DLL 1069


>gi|308049020|ref|YP_003912586.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM 9799]
 gi|307631210|gb|ADN75512.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM 9799]
          Length = 1218

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 133/980 (13%), Positives = 271/980 (27%), Gaps = 146/980 (14%)

Query: 28   VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
            V   N+ V+     GN     +   L    +                        + ++ 
Sbjct: 238  VEQFNEAVANKWVKGNMIKPAQLDNLTAWLEGSDELP-LDNAGKVMARYTTGTFADALSA 296

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCV 146
               K++  + +           + +            A L   A ++       K++   
Sbjct: 297  GGKKQATTVADS-----PVLAALENLARQLDANPVKAALLRHCAHWVAHRVAAEKRRRAQ 351

Query: 147  LDFEDLIINTNDLLKKRDVS--AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            LDF+DLI +    L++   +    +   I  +    LIDE QDT  +Q+ + + L     
Sbjct: 352  LDFDDLIKDLGKALEQEHRAGGDKLASAIRHQFPVALIDEFQDTDPVQYRLFQRLY---- 407

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                       L  +GD KQ+IY F GA+    L+ +R           +     L  ++
Sbjct: 408  ----LAQEDTALLMIGDPKQAIYGFRGADIHTYLKARRD---------TEGRHYTLDTNY 454

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RST  ++   + VF++ E           +I            V               P
Sbjct: 455  RSTQQMVDAANAVFALGERHPDGPFLHGESIPFLPVAANGRKEV-------LMDGDSPVP 507

Query: 325  QQESWTSYFDS---LPQESSASILARRIAYTISNMIGTDTIFSNGKKR-----VIQAKDI 376
                W    D    L +    S  A+  A  I+ ++        G  R      + A DI
Sbjct: 508  AMTFWWDEGDEGEVLSKGEYVSRQAQACAEEITRLLNGAAKGDVGFDRDGERSPLAAADI 567

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             +LVR   D    + +   L      SV  +D+  +      + L  + + +     + +
Sbjct: 568  AILVR---DFREASAVRDALSERGVRSVYLSDKDSVFSSEEAEALQRILQAVALPS-ERA 623

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
                L + +  FS   +              E   +       + +   +    L  I +
Sbjct: 624  IKAALATAVLGFSWAALDAFNHD--------ELAWERELAQFRELKLCWQRQGVLPMIRR 675

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE- 555
              + +      L   +  ++ ++         L E L           + ++ L  + E 
Sbjct: 676  LLAHYGVAQRALADPRYGERRLTNLL-----HLAELLQGASAQLDGELALIRFLAEQRED 730

Query: 556  -QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        ++   V+++T+H +KGLE P+VFL        +      +    +  +
Sbjct: 731  STLGDEQVLRLESDAELVKVITIHKSKGLEYPLVFLPFIAGYREASDRGGVLFYRDADGN 790

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSN 672
                               D      +   EE  RLLYV +TR        +     +  
Sbjct: 791  KSLTF----------EADDDARAAADRERLEEDLRLLYVALTRPRHGCFLGLAPVKLSRR 840

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN-------TPLE 725
             K+         +       E ++   +  ++              PE        T  E
Sbjct: 841  GKRGEPDIHRSALGCLLGAGEALEPATIRAALEALAQHPGVVLATPPEPTGTLLLATETE 900

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDIN----------EPYILNPSTIDTKGKTNLESLLS 775
            +     +    Q       +     +            P  L     +T         L 
Sbjct: 901  QALVPPKPYQRQLQRPWWIASYSALLTGMSADHSLSGLPERLMEVQDETAPVQAQPQELE 960

Query: 776  D--------NQTFNRGLIIHKLLQVI---------FTLPEHKRKNFITSYCTKNAKLWPA 818
                      +    G  +H L +               +  R        ++  +    
Sbjct: 961  PAEGSIHAFPKGAMPGTFLHDLFEWAALQGQARYGAGFAKIDRAQLAAELSSRCERHGYQ 1020

Query: 819  KEYKNLLLSITRLLENPMMTTAMS------CDSYSEVSVSGKINCPK------------- 859
               + LL    + L  P+     +          +E+     ++                
Sbjct: 1021 DHTEVLLAWFEQALALPLELPTGTVSLSGLDQVQAEMEFWLAVDQLDVVELDQWVRASVW 1080

Query: 860  ------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQE---------IEHIPY 898
                         + ++ G ID   + +   ++ +YK+++    E            + +
Sbjct: 1081 PGEPRPQLRPNQVNGMLKGFIDLTFLHEGRYYVADYKSNYLGADERAYTVDAMREAMLEH 1140

Query: 899  THIAQLSIYEKILKDSYPNK 918
             +  Q  +Y   L      +
Sbjct: 1141 RYDLQAVLYTLALHRLLSAR 1160


>gi|328907786|gb|EGG27549.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium sp.
            P08]
          Length = 1078

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 124/867 (14%), Positives = 256/867 (29%), Gaps = 138/867 (15%)

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A+ +     +  +   +  F+DLI +  D L+  D        +      +++DE QDT 
Sbjct: 205  AQSVRKDVRKRSRLRALHTFDDLISDLVDALRDSDRGPLACATLANRFRLVMVDEFQDTD 264

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +QWE ++                  L+ +GD KQSIY+F GA+        +       
Sbjct: 265  PLQWETLQR----------AFHGHSNLWLIGDPKQSIYAFRGADVHAYQDAAQ------- 307

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS--TTTIRHRSSRIGQVGT 307
                   ++ L +++R+   I+  ++ +F   +   G+   S        R +     G 
Sbjct: 308  ---SASYVLHLDVNYRTDKTIVEAINTLFGSAQLGHGIPMGSVTARHQESRIATAATNGP 364

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--SN 365
               W Q       Q        T+  D L  E         +   +  M+   T+    +
Sbjct: 365  HYSWSQPFQIRCIQAPANVRLDTTASDRLVTED--------LVNQVIMMLEGGTVVTDDD 416

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            G+ R ++  DI +LVR+R+             +      V +    +    A  DL+ L 
Sbjct: 417  GEVRPLRPNDIAILVRRRRRGA----ELAAALSQAHQPAVFSGALSVWSSQAADDLVTLL 472

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
              + +  D+     +  S L   +  D+    ++      +              +  + 
Sbjct: 473  EALDN-TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTIE 531

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
              +H            D  T ++    G +             +        +    + +
Sbjct: 532  AALHR----------PDVLTRLVSMTGGERYVTDLRQVAQKAHI-----AACKGMLTATA 576

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            +   +  + +Q      R   ++   V IMT+H AKGL  PVV L D  S     K I  
Sbjct: 577  TAAWIREQQQQAGDDDPRRLDSDQQAVTIMTIHEAKGLGFPVVLLPDIASAWAPKKSISG 636

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +             +    S+    +  ++  ++  + E  RLLYV +TRA   + + 
Sbjct: 637  PVVWHDGQR------RVLDISSQGADRAIAVESHEEDERGENLRLLYVALTRARSAVRLW 690

Query: 666  K------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
                   HS ++ ++          +              L +                P
Sbjct: 691  WSPCPQRHSWSAFQRLVEMDRATGKLGLGNAGTVPGTFPWLNSGPIATAIAPANQRCLTP 750

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
              T   R   + + +        + +       + +   P+  +T     ++    D+  
Sbjct: 751  TATTQSRARVVPRTLTRPVDTAFVRTSYSGLTADLHAAVPTLANTLIDEPVDDKSVDDTA 810

Query: 780  ---------FNRGLIIHKLLQVIFTLPEHKRKN--FITSYCTKNAKLWPAKEYKNLLLSI 828
                      + G ++H +L+ I T           IT    + +   P     +L   +
Sbjct: 811  PGLCGLPGGTSFGSLVHAVLEYIDTSATDLSAEVLAITRRTLRTSP-LPDVPPADLAAGL 869

Query: 829  TRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKKD------------------- 861
             ++L + +        +      D  +E++    ++                        
Sbjct: 870  EQVLHSDLGSLAPGMTLADFSPADRLAEMNFELAMSQSGGSATMADLASPLCDPSLVPPD 929

Query: 862  ---------------------IIISGRIDQISIS-QQNIFIFEYKTHHHVPQE------- 892
                                   ++G ID +         + +YKT+             
Sbjct: 930  DPISGYGKMLVHIPNGNQALHGFLTGSIDAVLRRPDGRYLVVDYKTNRIPGVSKLTPRMY 989

Query: 893  ------IEHIPYTHIAQLSIYEKILKD 913
                         +  Q  +Y   L  
Sbjct: 990  DAHTMRAMMFSSHYPLQGLLYSAALHR 1016


>gi|238021168|ref|ZP_04601594.1| hypothetical protein GCWU000324_01066 [Kingella oralis ATCC 51147]
 gi|237868148|gb|EEP69154.1| hypothetical protein GCWU000324_01066 [Kingella oralis ATCC 51147]
          Length = 666

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 107/613 (17%), Positives = 196/613 (31%), Gaps = 119/613 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           +E + K+Q +    ++   T +                + A Y+        +DF+DLI 
Sbjct: 126 REAVFKAQHQISLWKNNLQTPEAAFQVADDDWAKQIAQVYAAYQTTLAHYQAVDFDDLIR 185

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++   +   R K  Q ++++LIDE QDT+  Q+ ++R+L               
Sbjct: 186 LPTLLLQQNAEA---RLKWQQRLHYLLIDECQDTNACQYALMRALVGL----------EG 232

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + R +    +          II+L  ++RSTA IL V 
Sbjct: 233 RFTAVGDDDQSIYAWRGANMENLRRLQEDYPQ--------IKIIKLEQNYRSTARILKVA 284

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + V +        +                     LW Q+                    
Sbjct: 285 NHVIANNPKLFPKT---------------------LWSQLGEGE--------------VV 309

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +    S +  A  +A  I+          N         D  +L R      L     R
Sbjct: 310 RVVACQSETHEAEFVAQQIAR---------NKLIYGANFADFAILYRGNHQARLFEDALR 360

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 +I    +      D   IKD+++  R + + +DD +F+    +P     +  + 
Sbjct: 361 S----ARIPYQISGGQSFYDKAEIKDVLSYLRLLANPDDDPAFLRAATTPKRGIGDTTLG 416

Query: 455 KICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           K+     + E          E +   +       Q  +  + +    A      +    +
Sbjct: 417 KLNDYAKQHECSLFQAAQSMEALAALSAKNREAVQQFVYLMQDYQARAAADDAGEVVQNL 476

Query: 508 LGAKKGRQQFISRF-----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
           L   +                     + +   +  +  +    +L EL   +        
Sbjct: 477 LQEIEYESYLAGADEGGKAAEMRWQNVQDLAGWLAKKGEEGEKNLIELTQTIALMTLLEG 536

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           R      + V++ T+H +KGLE P V+LV     +F H                      
Sbjct: 537 RD-DGEVDAVKMSTLHASKGLEYPFVYLVGCEEGLFPH---------------------- 573

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                           ++    EE  RL+YVG+TRA  QL +        +         
Sbjct: 574 -------------ADSVEAGALEEERRLMYVGITRAKQQLTLTHCIKRKRQGTFVFPEPS 620

Query: 683 DMVYDSFHNDERV 695
             + +   +D  +
Sbjct: 621 RFINEMPQSDLDI 633


>gi|167582799|ref|ZP_02375673.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis TXDOH]
          Length = 695

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 100/578 (17%), Positives = 183/578 (31%), Gaps = 130/578 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +    + ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPTELFAKNE---PVRDRWQNRLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RTQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   I   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQIEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         +  R        + EFL +   
Sbjct: 466 IFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKR 525

Query: 536 ---------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVH 578
                     +  E   + +   L          ++             + + VR+ TVH
Sbjct: 526 KGTKPEPDEAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H        +                             
Sbjct: 586 ASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDD--------------------------- 618

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
              +  EE  RL+YV +TRA   L +         +++
Sbjct: 619 ---ARIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|83747407|ref|ZP_00944446.1| ATP-dependent DNA helicase rep [Ralstonia solanacearum UW551]
 gi|207744777|ref|YP_002261169.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
           IPO1609]
 gi|83725864|gb|EAP73003.1| ATP-dependent DNA helicase rep [Ralstonia solanacearum UW551]
 gi|206596187|emb|CAQ63114.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum
           IPO1609]
          Length = 705

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 104/627 (16%), Positives = 189/627 (30%), Gaps = 130/627 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L    +    +R K    + + L+DE QDT+
Sbjct: 178 AALVYRNYVATLHAYQAVDFDDLIRIPAELFANNEA---VRLKWQNRLRYFLVDEYQDTN 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L         +H       AVGD+ Q+IY + GA    +   +        
Sbjct: 235 ACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNLKLLQTDFP---- 284

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +        +  S                  
Sbjct: 285 ----SLKVIKLEQNYRSTVRILNAANAVIAQNPKLFEKTLWS------------------ 322

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 323 -----------------EHGMGDAINVSGANDEEHEAESVVFK---------LSAHKFER 356

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      L   + R      +I  V +      D   IKDL A  R I 
Sbjct: 357 RAQFRDYAILYRGNFQARLFEQILR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 412

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E         K A   +   +
Sbjct: 413 NADDDPAFIRAVTTPKRGVGNATLEVLGAFAGQAKVSLFEAAMMGGIEAKLAPRQLEPLR 472

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLR 538
              ++I  L   A           ++G              R        + EFL++  R
Sbjct: 473 VFCEFIVRLSDRAAREPASTLLDEMMGGIHYEAYLYDTYDERQAQNKWTNVLEFLDWLKR 532

Query: 539 ---------------NEQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                           +          +L EL   +        +    + + VR+ T+H
Sbjct: 533 KGTKPENLEAEEATGYDNADGLMDSGKNLLELTQTIALISMLEGKED--DPDAVRLSTLH 590

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H                                      
Sbjct: 591 ASKGLEYPHVFLVGVEEGILPHCREDDDLT------------------------------ 620

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 EE  RL+YVG+TRA   L I         +++        + +   +D   +  
Sbjct: 621 --DEKIEEERRLMYVGITRAQRSLHITWCKKRKRARETVVCEPSRFIAEMKLDDGAGQTP 678

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLE 725
           + T      +              P  
Sbjct: 679 EDTMPAMSPKDRLGALKGLLAAKKPAA 705


>gi|134294278|ref|YP_001118013.1| UvrD/REP helicase [Burkholderia vietnamiensis G4]
 gi|134137435|gb|ABO53178.1| UvrD/REP helicase [Burkholderia vietnamiensis G4]
          Length = 695

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 99/577 (17%), Positives = 186/577 (32%), Gaps = 128/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L    +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPAELFANNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNF--- 535
               +I  L   A           ++ A             R        + EFL +   
Sbjct: 466 MFCDFIQRLTERADKEPASVVLDDMMDAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E   + +   L          ++             + + VR+ TVH 
Sbjct: 526 KGTKPETEAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKDEDPDAVRLSTVHA 585

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+             D   P+                   
Sbjct: 586 SKGLEYPHVFLVGVEEGIMPHR----------GGSDDDGPVDS----------------- 618

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 619 --ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|51594549|ref|YP_068740.1| DNA-dependent helicase II [Yersinia pseudotuberculosis IP 32953]
 gi|108806179|ref|YP_650095.1| DNA-dependent helicase II [Yersinia pestis Antiqua]
 gi|108810289|ref|YP_646056.1| DNA-dependent helicase II [Yersinia pestis Nepal516]
 gi|145600708|ref|YP_001164784.1| DNA-dependent helicase II [Yersinia pestis Pestoides F]
 gi|153947747|ref|YP_001399206.1| DNA-dependent helicase II [Yersinia pseudotuberculosis IP 31758]
 gi|153997103|ref|ZP_02022236.1| DNA helicase II [Yersinia pestis CA88-4125]
 gi|165926252|ref|ZP_02222084.1| DNA helicase II [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939149|ref|ZP_02227700.1| DNA helicase II [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011668|ref|ZP_02232566.1| DNA helicase II [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213517|ref|ZP_02239552.1| DNA helicase II [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401880|ref|ZP_02307368.1| DNA helicase II [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420892|ref|ZP_02312645.1| DNA helicase II [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426213|ref|ZP_02317966.1| DNA helicase II [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167468817|ref|ZP_02333521.1| DNA helicase II [Yersinia pestis FV-1]
 gi|186893549|ref|YP_001870661.1| DNA-dependent helicase II [Yersinia pseudotuberculosis PB1/+]
 gi|218930844|ref|YP_002348719.1| DNA-dependent helicase II [Yersinia pestis CO92]
 gi|229837171|ref|ZP_04457336.1| DNA helicase II [Yersinia pestis Pestoides A]
 gi|229839531|ref|ZP_04459690.1| DNA helicase II [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229900094|ref|ZP_04515231.1| DNA helicase II [Yersinia pestis biovar Orientalis str. India 195]
 gi|229900460|ref|ZP_04515589.1| DNA helicase II [Yersinia pestis Nepal516]
 gi|270488814|ref|ZP_06205888.1| DNA helicase II [Yersinia pestis KIM D27]
 gi|294505505|ref|YP_003569567.1| DNA helicase II [Yersinia pestis Z176003]
 gi|51587831|emb|CAH19434.1| DNA helicase II [Yersinia pseudotuberculosis IP 32953]
 gi|108773937|gb|ABG16456.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Nepal516]
 gi|108778092|gb|ABG12150.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Antiqua]
 gi|115349455|emb|CAL22428.1| DNA helicase II [Yersinia pestis CO92]
 gi|145212404|gb|ABP41811.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Pestoides F]
 gi|149289409|gb|EDM39487.1| DNA helicase II [Yersinia pestis CA88-4125]
 gi|152959242|gb|ABS46703.1| DNA helicase II [Yersinia pseudotuberculosis IP 31758]
 gi|165912922|gb|EDR31548.1| DNA helicase II [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921776|gb|EDR38973.1| DNA helicase II [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989437|gb|EDR41738.1| DNA helicase II [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205190|gb|EDR49670.1| DNA helicase II [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961021|gb|EDR57042.1| DNA helicase II [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048773|gb|EDR60181.1| DNA helicase II [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054732|gb|EDR64536.1| DNA helicase II [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|186696575|gb|ACC87204.1| DNA helicase II [Yersinia pseudotuberculosis PB1/+]
 gi|229682479|gb|EEO78566.1| DNA helicase II [Yersinia pestis Nepal516]
 gi|229686874|gb|EEO78953.1| DNA helicase II [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695897|gb|EEO85944.1| DNA helicase II [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706114|gb|EEO92123.1| DNA helicase II [Yersinia pestis Pestoides A]
 gi|262363571|gb|ACY60292.1| DNA helicase II [Yersinia pestis D106004]
 gi|262367499|gb|ACY64056.1| DNA helicase II [Yersinia pestis D182038]
 gi|270337318|gb|EFA48095.1| DNA helicase II [Yersinia pestis KIM D27]
 gi|294355964|gb|ADE66305.1| DNA helicase II [Yersinia pestis Z176003]
 gi|320013561|gb|ADV97132.1| DNA helicase II [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 720

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 101/552 (18%), Positives = 175/552 (31%), Gaps = 116/552 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ I
Sbjct: 172 RIYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILNHYRERFTNILVDEFQDTNNI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  IR L  +             +  VGD+ QSIY + GA+ + + R  +         
Sbjct: 229 QYAWIRLLAGE----------RSNVMIVGDDDQSIYGWRGAQVENIQRFLKDFP------ 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST+                               +         LW
Sbjct: 273 --GAETIRLEQNYRSTS---------------------IILAAANALIANNDGRMGKNLW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  S    F+ L +       AR +   I                  
Sbjct: 310 -------TDGAEGEPISLYCAFNELDE-------ARFVVNRIKAWQDNGGAL-------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++                        D   IKD +A  R I ++
Sbjct: 348 --NDCAILYRSNAQSRVLEEALLQTAT----PYRIYGGQRFFDRQEIKDSLAYLRLISNR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGISKFQHV 484
            DD +F  ++ +P     +  +  +    R    T+++  +        A    S  Q  
Sbjct: 402 NDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQSTRAMLQEKVLAGRAASALQRF 461

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE- 540
           ++ I  L         H     ++        +    G +    I+ L+E +  T +   
Sbjct: 462 VELIDSLARETADMPLHVQTDRVIRDSGLWSMYEQEKGEKGQARIENLEELVTATRQYSY 521

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           Q+    L  L + L             A  + V++MT+H+AKGLE P VF+V     +F 
Sbjct: 522 QDEDQDLMPLQAFLSHAALEAGDGQADAYQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 582 SQMSLDEGG----------------------------------RLEEERRLAYVGLTRAM 607

Query: 660 DQLIICKHSNTS 671
            +L +C   +  
Sbjct: 608 QKLTLCYAESRR 619


>gi|26991940|ref|NP_747365.1| ATP-dependent DNA helicase Rep [Pseudomonas putida KT2440]
 gi|148550374|ref|YP_001270476.1| ATP-dependent DNA helicase Rep [Pseudomonas putida F1]
 gi|24987067|gb|AAN70829.1|AE016727_5 ATP-dependent DNA helicase Rep [Pseudomonas putida KT2440]
 gi|148514432|gb|ABQ81292.1| ATP-dependent DNA helicase Rep [Pseudomonas putida F1]
 gi|313501239|gb|ADR62605.1| Rep [Pseudomonas putida BIRD-1]
          Length = 669

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 96/634 (15%), Positives = 208/634 (32%), Gaps = 125/634 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ +   +     +  +        A  +  HY+   K    +DF
Sbjct: 129 DDGIDEIKNMIGAWKNDLVLPPEALEKARNPRE-----QTAAIVYTHYQRTLKAFNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  +    + ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILQPVKLFQEHPE---VLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGM------- 233

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                    VGD+ QSIY++ GA P+ ++  K               I+ L  ++RST+ 
Sbjct: 234 ---RNQFTVVGDDDQSIYAWRGARPENLMLLKEDYP--------SLKIVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + +   +A                        QLW ++    +          
Sbjct: 283 ILRCANVLIANNPHAFEK---------------------QLWSEMGVGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I  +           +      D  +L R      LI
Sbjct: 313 -----RVIRCKNEEAEAERVAMEILTLH---------LRTNRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R +++ +DD +++ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDDDNAYLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y   ++             + Q    ++  + H      P  
Sbjct: 415 STTLEKLGNYATERGISMYAASEELGLGEHLDARYTERLQRFKHWLDGVRHKVALEDPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++           +  ++      I  +   +      L  ++    ++++ I +L
Sbjct: 475 ALHEMIRDIDYENWIRQQTASDKAAEFRISNVWFLVEALKNTLEKDEEGDMTIEDAIGKL 534

Query: 555 EQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                   ++    N   V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            +    T    + +   +D   + +       K 
Sbjct: 620 GEIIDCTPSRFLDELPPDDLAWEGLDDAPVEVKA 653


>gi|295394601|ref|ZP_06804820.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972494|gb|EFG48350.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 1103

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 113/1031 (10%), Positives = 256/1031 (24%), Gaps = 186/1031 (18%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKA---QTLQQASQTQCIEERFSLL 69
                  +    P   ++ ++  +   +          A   +      + +        L
Sbjct: 168  LAGHANEHLRTPEDIITYLDTCLYAFLNREFIDDCIAAIKRKRTIGPHEKEDHISLLQEL 227

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            ++ FL                       + +++       +        +          
Sbjct: 228  TAPFLDAPGKLW--------------PADVIEQVFTHLESLEMCSQIADVRNKKR----- 268

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +L   +   K +N  + F D +      +        I      +   + +DE QDTS
Sbjct: 269  LAHLLDTFASVKNQNRAMQFSDQVSFAYQAMMADP---NIVESERAKWKVVFLDEYQDTS 325

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              Q +++++L                + AVGD +QSIY++ GA    +            
Sbjct: 326  DSQVKMLKTLFAGLP-----------ITAVGDPRQSIYAWRGASELNI----EGFPHDFV 370

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
            + GQ+ +   +  SFR++  +L + + +            + +   R +        T  
Sbjct: 371  SPGQRATSFTMTTSFRNSQRVLAIANAIAGRLP-------EDSEDTRLKPITTNNEVTSP 423

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
            L +  VS    + +P                        ++  + +++            
Sbjct: 424  LGDVEVSVTQGKTHP----------------------TYVSDQLESLVE---------WM 452

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
              +     VLVRKR     +              V             + D +A+     
Sbjct: 453  RGRTGHRAVLVRKRMHFAPVAQALTA----AGFDVQVVGDAGGMGDPFVADTVAILNVAT 508

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV----- 484
                    + +L   + +    D+    T               A   +  F        
Sbjct: 509  DPHAVEHLMRLLTGRVCSLGAHDLRAFNTIVKNANAEASATPLTAVECVDSFATREYSEL 568

Query: 485  -IKYIHELIHIAQFCS-----------PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
             ++    L  +A                      +                     +D F
Sbjct: 569  SLQANERLRSLAFKLREVRKNHGGAIHMIRTIMRVFDMSYELASLPHERAESHRANIDTF 628

Query: 533  LNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSA---NHNEVRIMTVHTAKGLESPVV 588
            ++       +N   S+  +++ LE        +      + + V IMTVH +KGLE   V
Sbjct: 629  VSAVSSYVARNPTVSMTAVLAWLELANEHDAISPPPETLDESAVTIMTVHASKGLEFDAV 688

Query: 589  FLVDTGSQVFSHKH-----IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD--------- 634
             L          +         +  +P         +         ++            
Sbjct: 689  ALPFLTMGDLPTQPRSYQAWLTLGELPYPLRGDATKLPHLDLAQEPHVSVSEMKNMFKQT 748

Query: 635  ----------------------LIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTS 671
                                  +   +    + +  RL YV +TRA   L +   +    
Sbjct: 749  QADKEDIEDFIDAGNIDEKQLPIRDQIALYHRRQERRLAYVAVTRAKAHLWLGASYWGHR 808

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
                       + +         ++  +      +   +  +W     E    ++  T  
Sbjct: 809  TTANQLSPFLLEAIGTLNVAGANIEIPESEPDKPEGLPVEVQWPPVISEAEQKKQSRTRD 868

Query: 732  QLMDEQKI--------------------PKKLFSPIKNDINEPYILNPSTIDTK------ 765
             +  +  +                     K +          P  ++ + +         
Sbjct: 869  FVRSQAPLDLDSPVSIGDEGFHRVFARVQKIMSDARPQPPRVPQRMSTTDLVKYRANADA 928

Query: 766  --GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
               +         ++    G   H  ++  F          +T       +       + 
Sbjct: 929  YMREVQRPMPQQPSEYAALGTAFHAWVERHFGQS------ALTDIHEAQMRKALPAHVRK 982

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
               S+    E                +V            + G+ID +      + + ++
Sbjct: 983  RFDSLVATFERSAYAN------RVPHAVELPFELELGGRKVPGKIDAVFKDGDRVTVVDW 1036

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLN 941
            KT      +I         QL+IY   ++    Y +  +     +V   + F  P    +
Sbjct: 1037 KTGRKPSADILDTM---ATQLAIYVHAVQKLPEYADCEVGAEFYFVGSDETFT-PDTLPS 1092

Query: 942  KAFAEISTKIP 952
               A I    P
Sbjct: 1093 LDIAGILDAAP 1103


>gi|156743315|ref|YP_001433444.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
 gi|156234643|gb|ABU59426.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
          Length = 659

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 105/610 (17%), Positives = 191/610 (31%), Gaps = 112/610 (18%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLD 148
           ++ P +  +  +      + + R  T ++                   Y+ + +    LD
Sbjct: 135 RERPPVLLEPTELLRHISRAKSRLLTPRLAARFARDDLERFVAGCYQRYQRSLEHANALD 194

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F+DLI+ T+ LL +      +         H+LIDE QDT   Q+ ++  LT        
Sbjct: 195 FDDLILLTHRLLAEHPD---VLDTCQARWRHVLIDEYQDTDPAQYALVELLTR----PSP 247

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
            +   R+LFAVGD  Q+IY F  A+   + R +R   +          +IEL  ++RS  
Sbjct: 248 ANGHVRSLFAVGDGMQAIYGFRNADHTIIARFERDFPE--------ARVIELATNYRSRQ 299

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL     V       Q ++  +T     R       G V   + V ++           
Sbjct: 300 PILDAAYAVIRHSRAVQPMALRATKPEPPR-----GAGHVPPLQIVDAKDARD------- 347

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                            A R+  +I +++              + +DI +L R R  +  
Sbjct: 348 ----------------EAERVTRSIVDLLRRGR----------RPRDIAILYRSRHMSRT 381

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                R ++    I           +   ++D +A  R + +  D+LSF  +   P    
Sbjct: 382 FESALRHVR----IPYALRGATGFFERAVVRDTLAYLRVVNNPADNLSFNRIANVPPRGL 437

Query: 449 SEDDIFKICTQRHETE-------TVYEYIQKFANCGISKFQHVIKYIHELIHIAQF-CSP 500
               +  +     +            E +   +       + +         +      P
Sbjct: 438 GAGALATLSAFAAQRGLSLSETLAHPEVLAALSPKAAESARQLAALFVRWRRLVDGGMPP 497

Query: 501 HDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                 +L     +     R   E        + E  N    +       L   + E+  
Sbjct: 498 DHVLADVLERIGYQAWLEQRLEPEELADARAHVQELANAAAEHTA-----LNAFLQEVAL 552

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
              T         + V++ T+H AKGLE P+VF+         H+H              
Sbjct: 553 --LTSADDDDDERDRVQLSTIHAAKGLEWPIVFVAGLEEGTLPHEHSLVTPDG------- 603

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                       EE  RL YV +TRA +QL +   ++    K +
Sbjct: 604 ---------------------------VEEERRLCYVALTRAGEQLYLSWAASRVRGKPT 636

Query: 677 NQRTWYDMVY 686
               + + + 
Sbjct: 637 KPSRFLNEIE 646


>gi|124024248|ref|YP_001018555.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303]
 gi|123964534|gb|ABM79290.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303]
          Length = 802

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 99/632 (15%), Positives = 202/632 (31%), Gaps = 97/632 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y +A   N      D        ++    +  IR        H+L+DE QD
Sbjct: 202 KLTVETYRRYRKALAANNA---LDFDDLLLLPVQLLQQNEQIRRYWHNRFRHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGK-NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  D    +       R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYELIKLLVTDGREPEIFDDWQGRSVFVVGDADQSIYSFRAADFTILMGFQDDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +A++   + ++++L  ++RST+ IL   + + +           +T              
Sbjct: 319 KASDDATR-TMVKLEENYRSTSTILEAANALIANNTERIDKVLRATR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +  + T   D + +       A  + + +  +          
Sbjct: 365 ---------------GEGELITLTRCDDEIAE-------AEAVVHRMRML--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               ++  D+ VL R    +  I          ++I  +        D   IKD++A  R
Sbjct: 395 AHPELRWGDVAVLYRTNAQSRAIEESL----VRWRIPYIVVGGLRFYDRREIKDVLAYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  + ++    ++    ++      E ++        
Sbjct: 451 LLVNPADTVSLLRVINVPKRGIGKTTLQRLADAANQLGIPLWDVVSDAEAVRSLGGRSAK 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + I++L    Q   P +    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCELINDLQRSIQDQIPSEMIQQVMEKSGYISELIAEATDEAEERRRNLQELVNAA 570

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           L+ ++ +     E          +   +     + V +MT+H++KGLE P+VFLV     
Sbjct: 571 LQYQEENEEGNLEGFLA-SAALASDADSKDTAADRVTLMTLHSSKGLEFPLVFLVGMEQG 629

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F                                            + EE  RL YVGMT
Sbjct: 630 LFPSYRSLDDPS----------------------------------SLEEERRLCYVGMT 655

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA ++L +   S         Q     +             +     +        +  T
Sbjct: 656 RAKERLFLSHASERRLWGGMRQPAVPSLFLAELPEGLVQGDLPQIGGVALRRERRLDRLT 715

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
               +     +           + ++   P  
Sbjct: 716 RVDRDDNQRIKAGGVSGAPSNAVRRRQAGPAP 747


>gi|113968720|ref|YP_732513.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-4]
 gi|113883404|gb|ABI37456.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-4]
          Length = 671

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 104/648 (16%), Positives = 210/648 (32%), Gaps = 123/648 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K +  +E+ +    LK       +    +       K+ K       L   L   Y +  
Sbjct: 118 KELTQKELQEDKDLLKALAGAISNWKGGLIIPDQARKLAKDEQQ--QLFAMLYQRYAQHM 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    LDF+DLI+    LL+  +    +R +   +I ++L+DE QDT+  Q+E+++ L  
Sbjct: 176 KAYNALDFDDLILLPTLLLRHHEE---VRTRWQTKIQYLLVDEYQDTNTSQYEMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA+P+ ++   +   K          +I+L 
Sbjct: 233 E----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPK--------LKLIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +    S  S           G+   V             
Sbjct: 275 QNYRSSQRILRAANILIANNPHVYDKSLFSE-------LAYGEPMRVLF----------- 316

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                             ++    A R+   I           +      Q  D  +L R
Sbjct: 317 -----------------AANEEQEAERVVAEIIR---------HKFVGRTQFGDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+           +I    +          IKD+M   + +++ +DD +F+ ++
Sbjct: 351 GNHQSRLLERAL----MTNRIPYKLSGGTSFFARAEIKDIMGYLKLVVNPDDDNAFLRVV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHI 494
             P        + ++      +  +++E I              S      ++I +    
Sbjct: 407 NLPKRGIGPSTLERLGNFSNEKHISMFEAIFDPELNHHLPPNAMSALYQFGRFIVDTGEH 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLRN----EQNSYS 545
           A+   P +    ++               ++     +  + E   +        E     
Sbjct: 467 AERGEPVEAVKQLIRKINYEDYLYETSTSAKAAEMRMKNISELYRWVTEMLSGDELEEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L E+++ L       + +     ++V++MT+H +KGLE P VF+V    ++  H+    
Sbjct: 527 TLPEVVNRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPFVFMVGVEERILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              +   +E  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVDEERRLAYVGITRAQRELWFT 611

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                  +     R            D+ + + +      ++      
Sbjct: 612 -LCRERRQFGETMRCEPSRFLHELPQDDLIWENRKPQQTEQERMQTGR 658


>gi|315126291|ref|YP_004068294.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Pseudoalteromonas sp.
            SM9913]
 gi|315014805|gb|ADT68143.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Pseudoalteromonas sp.
            SM9913]
          Length = 1188

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 157/982 (15%), Positives = 304/982 (30%), Gaps = 144/982 (14%)

Query: 29   SDINKYVSLSMETGNPTILKKA--QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT 86
             +    V  S  +G+ T  +K     L+           F      F         N  T
Sbjct: 234  QEFIGAVKASDLSGSKTPARKGSLAALEAFCLGNDDFFEFGTNKYSFEVWSSENLSN--T 291

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
                K    L   L    D    + +             +   A ++ A   + K++  V
Sbjct: 292  ANYKKNGTLLTHPLISQFDTLAALNNTIKQGLKIAIVQYA---ASWVKAAIVKRKQEQSV 348

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +  +DL+ N +  L   +    +  KI Q     +IDE QDT  IQ+ +   +       
Sbjct: 349  ITPDDLLTNLHTAL-NSEQGDVLSQKIAQLFPVAMIDEFQDTDPIQYGIFSKIYA----- 402

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                 S  TL  +GD KQ+IY F GA+    +  K   ++             L  +FRS
Sbjct: 403  ----QSNTTLAMIGDPKQAIYGFRGADIFTYIGAKEAVEQS--------QQFTLGTNFRS 450

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            ++DI+  V+ +FS  +N      +         ++  +     L +   +          
Sbjct: 451  SSDIVNSVNSLFSKYDN--SFIYNDAIPFNKVKAKGKKAKDTFLIDGKPATAFEFNVFVD 508

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLVRKRKD 385
            E+         +    + LA   A  I  ++       +    + + A DI +LVR R +
Sbjct: 509  EAGDEKGKPTSKGLGQAHLATHFANKIVTLLEQANQGIACIGSKPVSAADICILVRDRVE 568

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                  + +   +   I+ V   R  +        L+     +  Q D+     +L  PL
Sbjct: 569  A----QIMKQALSKANIASVYLSRDSVFSQELSHHLLNFLTALHGQYDESLLRGVLAGPL 624

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
            F  S +DIF +    +  +    +  + ++      Q  +  +  L       S +    
Sbjct: 625  FCLSYNDIFALADDENAWQEHLNFFAQLSHIWHK--QGAMAMLERL------LSHNQLSA 676

Query: 506  LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT-IKRA 564
               G     +++++ F       L E L       + +   L+    ++ Q     ++  
Sbjct: 677  KWQGLGYNVERWLTDF-----RHLGEILQQKQIELEGTLRLLRWFAQKVSQQDGETVQVR 731

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              ++ N V+I+T+H +KGLE P+VF+                           +     +
Sbjct: 732  LESDANLVKIVTMHASKGLEYPLVFMPFASGYR---------------ETKDALYHHNGK 776

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS-------- 676
                 +   D ++  ++    E  RLLYV +TRA     +  ++    +           
Sbjct: 777  LIFDLSKDEDALQQAEQERLAEDLRLLYVALTRAVHFCALGVYNIGQGQSSRLAIQSSAL 836

Query: 677  -----------NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                       + +TW   + +    ++ ++ +    S    E     ++  H E   L 
Sbjct: 837  GHVLFSGLALTSSQTWRTHLSEFCDANDSMEYL-QITSGELLEQGILRFNNEHVEKQALS 895

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK------TNLESLLSDNQT 779
                  Q+  + +         K   ++      S  D +          L S  S  + 
Sbjct: 896  INTVTTQIERDWRATSFSALSFKKHTDQLAPGR-SDEDHQRDEFAVQQDELLSPYSFPKG 954

Query: 780  FNRGLIIHKLLQVIFTL--------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
               G  +H++ + +           PE      I     K       ++       I   
Sbjct: 955  AKPGSCLHEIFEQLDFTSPLVHPSNPEQNLSAVIKRAFEKYHIDEQWQQITE--QWILDA 1012

Query: 832  LENPM-------MTTAMSCDSYSEVSVSGKI-----------------------NCPKKD 861
            L  P+       ++     D   E+  +  +                             
Sbjct: 1013 LNCPLNSENNLSLSQLSPSDCLVEMEFNLPLASLSAPKLNEMLIKHFDFSQSKLEFAHVK 1072

Query: 862  IIISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHIPYT-----HIAQLSIYEKILK 912
             ++ G ID I   Q   +I +YK+++        E E +        +  Q  IY   L 
Sbjct: 1073 GLLKGFIDLIFCYQGKYYILDYKSNYLGSTLADYEPEQLEQAMTSHQYHLQYLIYTVALH 1132

Query: 913  DSY----PNKSLVCLL---IYV 927
                   P+ ++   L    Y 
Sbjct: 1133 RLLKQRIPDYAIETHLGGVYYT 1154


>gi|119475297|ref|ZP_01615650.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2143]
 gi|119451500|gb|EAW32733.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium
           HTCC2143]
          Length = 671

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 91/633 (14%), Positives = 206/633 (32%), Gaps = 122/633 (19%)

Query: 98  EKLKKSQDEFIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           ++    Q +    ++        +  +T  +  L       Y+ A K     DF+DLI+ 
Sbjct: 134 DQADAVQQQISSWKNDMVNPDQAVAMATAPAGILCAQAYLRYQRALKAYNAFDFDDLIVV 193

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              + ++      I  K  + I+++L+DE QDT++ Q+ +++ L  D             
Sbjct: 194 PVQIFQQFPE---ILAKWQRRIHYMLVDEYQDTNISQYLLVKLLIGD----------RGK 240

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY++ GA P+ + + +               +++L  ++RSTA IL   +
Sbjct: 241 LTVVGDDDQSIYAWRGARPENLAQLQNDYPN--------LKLVKLEQNYRSTARILKAAN 292

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           +V     +    +  S           G    V                           
Sbjct: 293 RVIDHNPHVFEKALWSELGY-------GDPIRVIRCR----------------------- 322

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                +  I   R+   I +                Q  D  VL R    + L+    + 
Sbjct: 323 -----NEEIECERVVTEILDRRVRGHG---------QFSDYAVLYRGNHQSRLLELKFQS 368

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
               +++    +          IKD+MA  R ++++ DD +F+ ++  P        +  
Sbjct: 369 ----HQVPYQISGGTSFFARHEIKDIMAYLRLLINRADDNAFLRIVNVPRRKIGTSTLES 424

Query: 456 I-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +         ++++   +            ++ +    ++  +    +          ++
Sbjct: 425 LGNYATERDISLFDACSELGLEQSLSEASVTRLRQFTSWLDRISQRCESGDGMAAIREMV 484

Query: 509 GAKKGRQQFISRFG-----NEVIDVLDEFLNFTL---RNEQNSYSSLQELISELEQYPPT 560
                +                +  +   ++        +++    +Q  +++L      
Sbjct: 485 NDMDYQAWLHQNSSSDVVAERRMANVYTLVDSLQSTIDKDESEEDDIQSAVAKLVLRDLL 544

Query: 561 IKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
            ++    +  ++V++MT+H +KGLE P V+++    ++  H                   
Sbjct: 545 DRQQEDDDAMDKVQLMTLHASKGLEFPHVYIIGMEEELLPH------------------- 585

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                              +++   EE  RL YVG+TRA   L +   S      +    
Sbjct: 586 ----------------RASIEEDNIEEERRLCYVGITRAKRTLALTYCSKRKQYGEMIDC 629

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
                + +   +D   +  +    +N+      
Sbjct: 630 AASRFLDELPFDDLVWEGEEKDPQLNQQRGQET 662


>gi|89256441|ref|YP_513803.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314876|ref|YP_763599.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502543|ref|YP_001428608.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290953919|ref|ZP_06558540.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312719|ref|ZP_06803462.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89144272|emb|CAJ79555.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129775|gb|ABI82962.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253146|gb|ABU61652.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 671

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 101/617 (16%), Positives = 191/617 (30%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 138 QAKISFWKSALLTPDQVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 198 ---SNIQKFWADKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 297 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 321

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 322 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQIHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        + K+     + 
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATVHKLGEYASQH 428

Query: 464 ETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +        +  +            I           S  +        +     
Sbjct: 429 HCSFFHTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 634 IDELPETDLYWVGTEKE 650


>gi|332159790|ref|YP_004296367.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664020|gb|ADZ40664.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 674

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 103/663 (15%), Positives = 214/663 (32%), Gaps = 121/663 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ + +  +    + D      + +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLISQISNWKNDLLDPAAAAALARSERD--KLFVHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+       +R +    + ++L+DE QDT+  Q+++++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQND---LEVRERWQNRLRYLLVDEYQDTNTSQYQMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     S      VGD+ QSIYS+ GA P+ ++       +          +I+L 
Sbjct: 233 ----------SRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ--------LQVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S                              
Sbjct: 275 QNYRSSGRILKAANILIANNSHVFEKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E        +   ++    A R+            + ++   +  Q  D  +L R
Sbjct: 305 -----ELEYGDELKVITANNEDHEAERVV---------GELIAHHFVKKTQYSDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        I K+        ++++               G+   Q    ++  +I +
Sbjct: 407 NTPKREIGSATIQKLGEWANVRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWMEGIIRL 466

Query: 495 AQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E N   +
Sbjct: 467 VEREPIAAVRDLIHGIDYESWLFETSPSPKAAEMRMKNVNLLFSWMTEMLEGSELNEPMT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D + +  +   S  +          +        +
Sbjct: 612 CKERRQYGELIRPEPSRFLMELPQDDLKWENERKAVSPEERMQKGQSHLANIRAQLANAK 671

Query: 727 EET 729
           +  
Sbjct: 672 KPQ 674


>gi|330812568|ref|YP_004357030.1| putative ATP-dependent DNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327380676|gb|AEA72026.1| putative ATP-dependent DNA helicase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 669

 Score =  250 bits (639), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 96/595 (16%), Positives = 199/595 (33%), Gaps = 120/595 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  +  HY+   K    +DF+DLI+    L +     A I  K   ++ ++L+DE QD
Sbjct: 162 QTAAIVYTHYQRTLKAFNAVDFDDLILLPVKLFQDH---ADILEKWQNKVRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L            +      VGD+ QSIY++ GA P+ ++  K      
Sbjct: 219 TNASQYLLVKLLIG----------TRNQFTVVGDDDQSIYAWRGARPENLMLLKEDYP-- 266

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RST+ IL   + + S   +                        
Sbjct: 267 ------SLKVVMLEQNYRSTSRILRCANVLISNNPHEFEK-------------------- 300

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            QLW ++    +                + +  +    A R+A  I ++           
Sbjct: 301 -QLWSEMGHGDEI--------------RVIRCRNEDAEAERVAMEILSLH---------L 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +      D  +L R      LI    +     ++I    +          +KDLMA  R 
Sbjct: 337 RTDRPYSDFAILYRGNYQAKLIELKLQ----HHQIPYRLSGGNSFFGRQEVKDLMAYFRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           I++ +DD +F+ ++  P        + K+         ++Y    +        +    +
Sbjct: 393 IVNPDDDNAFLRVINVPRREIGSTTLEKLGNYATERKISMYAATDEIGLGEHLDSRFTDR 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                +++ ++        P      ++          +   ++      +  +   +  
Sbjct: 453 LARFKRFMDKVREQCAGEDPISALRSMVMDIDYENWLRTNSSSDKAADYRMSNVWFLIEA 512

Query: 536 T---LRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
               L  +++   ++++ I +L       ++    +    V++MT+H +KGLE P VF++
Sbjct: 513 LKNTLEKDEDGDMTVEDAIGKLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIM 572

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H                                      ++  T EE  RL 
Sbjct: 573 GMEEEILPH-----------------------------------RSSIEADTIEEERRLA 597

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           YVG+TRA   L     +      +         + +   +D   +    T +  K
Sbjct: 598 YVGITRARQTLAFTFAAKRKQYGEVIDCAPSRFLDELPPDDLAWEGNDDTPTEVK 652


>gi|157144411|ref|YP_001451730.1| ATP-dependent DNA helicase Rep [Citrobacter koseri ATCC BAA-895]
 gi|157081616|gb|ABV11294.1| hypothetical protein CKO_00120 [Citrobacter koseri ATCC BAA-895]
          Length = 673

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 101/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    +          K       +  +  
Sbjct: 111 TDQVALLKELTDGLIEDDKVILQQLISTISNWKNDLMTPAQAAASAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +    I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNRIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSKDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      + K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTEYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDVGLNQTLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEIQRLSEREPIAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P VF+V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVFMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +LI           +  +      + +   +D   ++ +   +  +
Sbjct: 605 KELIFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVTAEE 651


>gi|240136984|ref|YP_002961453.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           AM1]
 gi|240006950|gb|ACS38176.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           AM1]
          Length = 795

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 102/659 (15%), Positives = 195/659 (29%), Gaps = 114/659 (17%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+        +DF DL++    L ++      I         +IL+DE QDT++ 
Sbjct: 212 QLYAAYQARLATLNAVDFGDLLLLCLKLWRENPD---ILANYQDRFRYILVDEYQDTNVA 268

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          + + +  VGD+ QSIY + GAE   +LR +          
Sbjct: 269 QYLWLRLLAQ----------ARKNVACVGDDDQSIYGWRGAEVDNILRFEHDFP------ 312

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +++ L  ++RST  IL     + +  E   G +                       
Sbjct: 313 --GATVVRLERNYRSTGHILAAASGLIAKNEGRLGKTL---------------------- 348

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  + T  +DS  +       AR++A +I ++               
Sbjct: 349 ------RTEDEAGEPVTVTGSWDSEEE-------ARQVAESIESLQRRGHAL-------- 387

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VLVR       I            +           +   I+D +A  R  ++ 
Sbjct: 388 --SEIAVLVRISAQMREIEDRF----VQVGLPYRVIGGPRFYERAEIRDALAYLRVTMNG 441

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHV 484
            DDL+F  +  +P     +  +  +    R +   +    +K       K       + +
Sbjct: 442 ADDLAFERIFNTPKRGLGDATLQTLHAFARADRIPLLAAARKLIETDELKPRARSMLRGL 501

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           ++     + + +     +    IL      + +      +    L+    F    E+   
Sbjct: 502 VESFTRWVRLVETKPHPEVAQTILEESGYTEMWQKDRSADAAGRLENLKEFVRSMEE--- 558

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               ++ + LE     ++ + +   + V +MT+H AKGLE   VFL      +F ++   
Sbjct: 559 --FPDMAAFLEHVSLVMEASEAEGADRVSLMTLHAAKGLEFDTVFLPGWEDGLFPNQR-- 614

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                          I    ++  EE  RL +VG+TRA  +  +
Sbjct: 615 ------------------------------AIDESGRAGLEEERRLAHVGLTRARKRAKL 644

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               N       +       + +       V +     S     +            TP 
Sbjct: 645 SFAVNRRIHGLWSSTIPSRFIDELPPQAVDVVEAPAHFSAGASRFDRNPTPFGSSYGTPG 704

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
            +                             I       + G  +             G
Sbjct: 705 WQRAQANTSGGFGGGLNGGQGRGGRASGPREIEGELVAKSTGAPSTFENGQRVFHTKFG 763


>gi|94676604|ref|YP_588976.1| exodeoxyribonuclease V, beta subunit [Baumannia cicadellinicola str.
            Hc (Homalodisca coagulata)]
 gi|94219754|gb|ABF13913.1| exodeoxyribonuclease V, beta subunit [Baumannia cicadellinicola str.
            Hc (Homalodisca coagulata)]
          Length = 1183

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 131/863 (15%), Positives = 262/863 (30%), Gaps = 133/863 (15%)

Query: 126  SLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
             L LA   +    E+ K    ++ F DL+ + +++L            I       +IDE
Sbjct: 323  ILRLAINEIIPSLEKEKNLKNIMSFHDLLKDFDNILTSN-HGEIFANFIRSRYPVAMIDE 381

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QD   +Q+ + + L +         +    L  +GD KQ+IYSF GA+    +  +++ 
Sbjct: 382  FQDIDPLQYRIFKRLYDL--------TKNTVLLLIGDPKQAIYSFRGADIFTYIHARKLV 433

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +              L  ++RS   ++  V+++F         SE         +     
Sbjct: 434  K----------ECYTLDTNWRSAPGMVNAVNQLFQSLPIPFIFSEIPFKPAVASAFNSN- 482

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT----- 359
                     +    D +  P    W    +++        +A + A TIS  + +     
Sbjct: 483  ---------LQFMLDEKAQPAMLLWLQASNNVGVAHYQKSMAHQCAATISYWLRSSNAGL 533

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              + SN  ++ +QA DI+VLVR R +  LI      L          +    +   +  +
Sbjct: 534  AWLESNKGRKQLQASDIVVLVRNRDEAALINDAMTALSIKSV---YVSSFSSVFQTIEAR 590

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            ++M L + I+  E      C L + L    E D+ +      +    +       +    
Sbjct: 591  EIMCLLQAIVEPEQHNKLRCALATSLLG-GEVDVIESFNINEKINNKWRGKFNLYHKIWQ 649

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            +       +  L HI       +F    L +  G +   +         L E L      
Sbjct: 650  QH----GILPMLRHIIIENHIAEF---WLSSYSGERCITNVL------HLGELLQQASVQ 696

Query: 540  EQNSYSSLQELISELEQYPPTIKRAH---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              N Y+ ++ L  ++       K        +HN V I+T+H +KGLE P+V L    + 
Sbjct: 697  FDNEYALVRWLSVKITDPNDKDKNQQLWLENHHNLVHIITIHKSKGLEFPLVLLPFASNF 756

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                  +     +     D  I          +                E  RLLYV +T
Sbjct: 757  RSKKHSMFHDRQLYPAGLDLSIAPNSMNLTEDD------------KRLAEDLRLLYVAVT 804

Query: 657  RASDQLIIC------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE-- 708
            R+     I        +S  ++    +      ++      +    + +L   + + E  
Sbjct: 805  RSIYHCCIGIAPIYHGYSKITSTSDLHLSALGYLIQQGNAGNAIFLRSQLEKLLVRAEGD 864

Query: 709  ----WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI----------------K 748
                 I     +H   + P+   E   + +      +   +                  K
Sbjct: 865  ISLCEINKSPLSHTIVSIPVANLELSARHLPINLFDRWQITSYTELQKNTAVTSIRFNDK 924

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                    +N   ++ +      +  +       G  +H + + I    +          
Sbjct: 925  AQQQLYSNINVDLLNHQQYITELTQHTFPCGKLAGKFLHSIFETIDFSKQIDSTQLSLEL 984

Query: 809  CTKNAKLWPAKEYKNLLLSITRL-LENPMMT--TAMSCDSYSEVSVSGKINCPKK----- 860
               N         +  L  +    L N  ++       +  +E+     IN   +     
Sbjct: 985  TKHNIDQCWLLVLQQWLHKVITAPLNNSNLSLSKLDHRNYCTELPFLLPINTTLRAQDMD 1044

Query: 861  ---------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY- 898
                                   +++G ID +   Q   ++ +YK++        +    
Sbjct: 1045 KLCKNYDPLSLRCPTLDFTPVKGMLTGVIDLVFCWQNRYYLLDYKSNRLGEDSSAYTKEA 1104

Query: 899  --------THIAQLSIYEKILKD 913
                     +  Q  +Y   L  
Sbjct: 1105 IEQAMIQHRYELQYQLYTLALHR 1127


>gi|39996634|ref|NP_952585.1| exodeoxyribonuclease V subunit beta [Geobacter sulfurreducens PCA]
 gi|39983515|gb|AAR34908.1| exodeoxyribonuclease V, beta subunit [Geobacter sulfurreducens PCA]
          Length = 1204

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 123/1009 (12%), Positives = 280/1009 (27%), Gaps = 173/1009 (17%)

Query: 9    LNESYELIYK--DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
              E  +       LW     +++ I         + +         L  A          
Sbjct: 215  AGEIRDAFAALSSLWRTQRAEIAAILAADPGLSRSRSNYHPDLVPGLLVAMDGYAAGADP 274

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
              L + F             ++ +    D  +      D   ++  +       +     
Sbjct: 275  YALFAGFDKFTTGFLAGQRLKKADPPRHDCFD----LCDRLARLTSQRLLLLKAE----- 325

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
               A          K +  V  ++DL+ + +         A +  ++ +     LIDE Q
Sbjct: 326  --FAARGRERLAALKAQRNVRGYDDLLTDLHAA-LGGPGGAALADRLRERYRAALIDEFQ 382

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +Q+ + R++                LF +GD KQ+IYSF GA+    L  ++    
Sbjct: 383  DTDQVQYRIFRAVFS---------GGAVPLFLIGDPKQAIYSFRGADVFAYLEARQEIPA 433

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG--- 303
                         +  ++RST +++  V  +F +      L+ D        + R G   
Sbjct: 434  E--------RRFTMDRNWRSTPEMVEAVSSLFRLGGEHPFLAGDIAFPPVTAARRQGCSF 485

Query: 304  ---QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                   +QLW     + D              D +   +    +   +A  IS ++   
Sbjct: 486  GDRDPAPLQLWFFRRGESDR-------------DCINLGTGRQRIVTAVADEISGLLADG 532

Query: 361  TIF------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                      +G+ + +   D+ V+VR   +  L+    R       I  V      L +
Sbjct: 533  RAGTACLEDEDGRMQPLTPGDVAVIVRSHFEAGLVQQALRE----RGIPSVVQSADSLFE 588

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                 ++  +   +    ++      L + LF  + +D+  +                  
Sbjct: 589  TREAGEVWTVMGAVAEPGNEGRVRAALVTALFGLNGNDLALL------------------ 630

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLD 530
                + ++  I    +   + +       F  +L  +  R++ +     E          
Sbjct: 631  MEQEAAWEARIAAFRDYRDLWREQGFMTMFRALLDREGVRERCLPLPDGERRLTNLRHCA 690

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQY---PPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            E L+      +    +L     E           +    ++   VRI+TVH +KGLE PV
Sbjct: 691  EVLHQAAVERRLGPDALTAWFGERVSVPPPGEDYQIRLESDDRAVRIVTVHVSKGLEYPV 750

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            VF       +   +    + +            +   +    +   +  +  +     E 
Sbjct: 751  VFAPFMWGGL---RDDGDLTLCHEEG-------YRLVADFGTDRRDERQRRARTEALAEN 800

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY------------------------- 682
             RLLYV +TRA  +  +        E  +     +                         
Sbjct: 801  LRLLYVALTRARCRAYLVWGKFRGAETSAPGWLLHGSRPDGGGDPVALLEGTLKKATDQT 860

Query: 683  -----DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                 D +  +      V +    + + +      E      +                 
Sbjct: 861  LLERLDHLATASGGGIAVTEDPCPDRLPRFRPAMGEAPLVCRDFRGDIDAGWRVASFTSF 920

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                +  + + +    P  L P            S+ +  +    G+ +H L + +    
Sbjct: 921  ASGHREPAELPDRDQTPPELPPDAASDTAAPPEGSMFAFPRGPRAGIFLHGLFEQLDFAV 980

Query: 798  E--HKRKNFITSYCTKNAKLW-PAKEYKNLLLSITRLL-----ENPMMTTAMSCDSYSEV 849
                  ++ +     +N            ++ ++  +       +  +         +E+
Sbjct: 981  AGDDTVRDLVRRELERNGHGAQWLDPVSRMVGNVLNVPLGGEGNSFRLADLAPGSWLAEL 1040

Query: 850  SV-------------------------------SGKINCPKKDIIISGRIDQISISQQNI 878
                                             + +I   +   ++ G +D +       
Sbjct: 1041 EFYFPLRFVRDAQVATILAGAGVLPQGADLGAVARRIAFGEARGMVRGFVDLVFRHSGRY 1100

Query: 879  FIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILKDSYPNK 918
            ++ ++K++H   +  ++ P           +  Q  +Y   L      +
Sbjct: 1101 YLIDWKSNHLGNRAEDYGPERLCREMERSLYPLQYLLYTVALNRFLERR 1149


>gi|123440560|ref|YP_001004554.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087521|emb|CAL10302.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 674

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 104/663 (15%), Positives = 215/663 (32%), Gaps = 121/663 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K++  + +      L++ + +  +    + D      + +S      L  +    Y+   
Sbjct: 118 KDLTHKWLEDDKTLLQQLISQISNWKNDLLDPAAAAALARSERD--KLFVHCYGLYDAHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   VLDF+DLI     LL+K      +R +    + ++L+DE QDT+  Q+++++ L  
Sbjct: 176 KACNVLDFDDLISLPTLLLQKD---LEVRERWQNRLRYLLVDEYQDTNTSQYQMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     S      VGD+ QSIYS+ GA P+ ++       +          +I+L 
Sbjct: 233 ----------SRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ--------LQVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S                              
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKKLFS------------------------------ 304

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                E        +   ++    A R+            + ++   +  Q  D  +L R
Sbjct: 305 -----ELEYGDELKVITANNEDHEAERVV---------GELIAHHFVKKTQYSDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L       L    +I    +          IKDL+A  R + +Q+DD +F+ ++
Sbjct: 351 GNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHI 494
            +P        I K+        ++++               G+   Q    ++  +I +
Sbjct: 407 NTPKREIGSATIQKLGEWANVRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWMEGIIRL 466

Query: 495 AQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
            +        D    I       +   S    E  +  ++   ++        E N   +
Sbjct: 467 VEREPIAAVRDLIHGIDYESWLFETSPSPKAAEMRMKNVNLLFSWMTEMLEGSELNEPMT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   +E  RL YVG+TRA  +L    
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +  +      + +   +D + +  +   S  +          +        +
Sbjct: 612 CKERRQYGELIRPEPSRFLMELPQDDLKWENERKAVSPEERMQKGQSHLANIRAQLANAK 671

Query: 727 EET 729
           +  
Sbjct: 672 KPQ 674


>gi|332139482|ref|YP_004425220.1| ATP-dependent DNA helicase Rep [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549504|gb|AEA96222.1| ATP-dependent DNA helicase Rep [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 671

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 112/723 (15%), Positives = 237/723 (32%), Gaps = 141/723 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +       P  +   ++ + ++ +      +      L+        ++ F+
Sbjct: 59  AAREMKERV-AQTLGKPEARGLKVSTFHTMGLTIIKAHVKDLG--LKPGFSLFDDKDSFA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF--KSTLA 125
           LL+               T +         ++L+  Q      ++           +T  
Sbjct: 116 LLNDL-------------TSDTLDGDK---DQLQLLQSCISNWKNDLILPDALLKSATST 159

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                      Y++  K    LDF+DLI+    LLK  +    IR K   +I ++L+DE 
Sbjct: 160 GEREFAEAYKRYQDNLKAYNALDFDDLILLPTLLLKSSEA---IRAKWQSKIRYLLVDEY 216

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+++ L  +                VGD+ QSIYS+ GA+P+ +   ++   
Sbjct: 217 QDTNTSQYELVKLLVGE----------RARFTVVGDDDQSIYSWRGAKPQNLHLLQQDFP 266

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +         ++I+L  ++RS+  IL   + +     +                      
Sbjct: 267 R--------LNVIKLQQNYRSSGRILHCANILIQNNPH---------------------- 296

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               L+++ +        P +       +   +   A +LA                  +
Sbjct: 297 ----LFDKTLFSELQYGEPLKVIEAKNEEHEGERVVAELLA------------------H 334

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 Q KD  +L R    + +       L    +I    +          +KD+MA  
Sbjct: 335 KFMNRTQFKDYAILYRGNHQSRIFEK----LLMSNRIPYKISGGMSFFGRAEVKDVMAYL 390

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGI 478
           R +++Q+DD + + ++ +P        + K+         +++E            +   
Sbjct: 391 RLLVNQDDDNALLRIINTPGRGIGRATLEKLGNFANSLGVSMFEAATHPNLNSVLPDKAF 450

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFL 533
                  ++I EL   A+  +  D    ++      +         +     +  +    
Sbjct: 451 HAVSSFSRWIVELSDNAERGNTADAVRTMIRTMGYEEWLYETSASPKAAEMAMANVSTLF 510

Query: 534 NFTLRNEQNS----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +     + +      +L E+++ L       +       ++V++MT+H +KGLE P+VF
Sbjct: 511 GWVNDMLEGNDLDQPMTLTEVVNRLILRDMMERGEDDGEGDQVQLMTLHASKGLEFPIVF 570

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           LV     +  H+                                       +   EE  R
Sbjct: 571 LVGMEEGLLPHQSSVD-----------------------------------EDNVEEERR 595

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L YVG+TRA  +LI           +         +++   +D + +  K   +  + + 
Sbjct: 596 LAYVGITRAQRELIFSLAKERRQFGEVINPEPSRFLFELPADDVQWENQKPKATKEERQQ 655

Query: 710 IAY 712
            A 
Sbjct: 656 KAQ 658


>gi|146296193|ref|YP_001179964.1| UvrD/REP helicase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409769|gb|ABP66773.1| UvrD/REP helicase [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 970

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 138/872 (15%), Positives = 292/872 (33%), Gaps = 103/872 (11%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRF-NTYKMFKSTLASLTLAKYLNAHYEEAKKKN--C 145
           +  K P  K  +++       + + + N+ K  + T+       Y+  H  E   +    
Sbjct: 143 VLDKLPLEKFFIEEYFHLLQSLIEEYSNSAKYIQKTIPLDPEVTYIFDHMAEMLDREFLR 202

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            + ++ ++     L++  +V A I    + +  ++++DE QD++ +Q  +  ++ E    
Sbjct: 203 EITYDLILEKAAKLVQIPEVKADI----NSKFKYLIVDEFQDSNFLQKTIFENICE---- 254

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                     +  VGD+KQSIY F GAEP                A     I EL  ++R
Sbjct: 255 ---------NIIYVGDKKQSIYRFQGAEPVVFDE----------AAETSNIIYELDTNYR 295

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           +   +   +D +         +       +++  S  G +  V++               
Sbjct: 296 TNLSLGQKIDAI-------SKILFPDYKPLKYFYSADGFLKIVEILNPTSENR------- 341

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKR 383
                               A  +A TI  M+      S G   KR ++  D  +L RK 
Sbjct: 342 ----------------IINEAHFVAKTIKEMVENGFEISIGGAPKRKVKYSDFAILSRK- 384

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                I  + + +   Y I +  N +  L     +  L  L   + +     +++ +L +
Sbjct: 385 --IQSIAHIYKEVFEKYNIPLEINFKRGLLQQREVVPLWGLLNVLQNPYKKSAYMQLLLN 442

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
           P+F              ++ + ++  I++  +      +  I  +             + 
Sbjct: 443 PIFGV------------NQHQALFSTIEQLQDLVPDDLKDFISKV---RENLYIKKLSEI 487

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
                   +   +  + FG    + +  F +    +E  S   L++ I+          +
Sbjct: 488 LHEFEELFEYSCKVYNIFGKPAYENVRLFYDLVEESESFSVDDLEKFIN----LQNEKFQ 543

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
              +  +   +M++H+AKGL  P+VFLV  G        ++   +  S N      +  P
Sbjct: 544 FGKSLSDSSILMSIHSAKGLSFPIVFLVGLGEST-QGPVMRNPKLKGSYNVQSKEYVIAP 602

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQRTWY 682
                     ++        ++E  RL YV +TR    L I         +K+   +++ 
Sbjct: 603 IWMRDK--YKEVKDITSVQDKQELKRLFYVAITRPMAGLFIVNSTVKPVGKKRGGSKSFA 660

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
           D +  S   +   +       I+  +    E           +       + D+ +   +
Sbjct: 661 DEIELSKIIEAAKEIGIEYEKIDLKDNEKLEKDFCKSFEVHTKSYLPTTIMEDKFENRFR 720

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ----TFNRGLIIHKLLQVIFTLPE 798
             SP      +      +     G    +   +  +        G  +H++ + + +L +
Sbjct: 721 YLSPTHIIDFKNCRALFAFKYIMGLPIFDEANTKLEISCNAKLLGTTVHRVFE-LTSLDK 779

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
                   +              +NL   +    E+P + +  +     E          
Sbjct: 780 LDTLAQNIALAMAENGFEDENLIRNL---VYNFFESPFVNSIKNKVVKEES--EAPFYLK 834

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             D II G ID+I      I++ ++KT+ H       +   +I QL IY K + +  P K
Sbjct: 835 LGDQIIYGIIDKIYHLPDKIYLLDFKTNLHFDHNKFEM---YIPQLFIYTKAVLEREPKK 891

Query: 919 SLVCLLIYVSEPKVFI--IPQNKLNKAFAEIS 948
            +   + ++ E K+F   +    L      I 
Sbjct: 892 DIHSSICWLREGKMFEYKMASEHLQDVLKTID 923


>gi|71735593|ref|YP_272988.1| exodeoxyribonuclease V subunit beta [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|71556146|gb|AAZ35357.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            phaseolicola 1448A]
          Length = 1230

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 131/1048 (12%), Positives = 286/1048 (27%), Gaps = 152/1048 (14%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            L    +     K  W     ++  + +            + ++    +   +        
Sbjct: 223  LQERRAALAALKGPWAAWAEELYVLCQDAVARKVVDGRKMQER--YFKPWFEKLAAWAAD 280

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                +  L   FT        E  K  P      + +  +     D              
Sbjct: 281  DTQEALDLGTGFTRLTPEGVAEAWKSDPPSLPAFE-AMAQLKAALDSLPKPDAA----VL 335

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
               A++++A +EE K++   + F+D+++  +  L        +   I ++    LIDE Q
Sbjct: 336  QHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HSAGGERLATLIREQFPVALIDEFQ 394

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +Q+ +  S+          +     LF +GD KQ+IY+F GA+    LR ++    
Sbjct: 395  DTDPVQYRIFDSIYR-----LEGNDEQTGLFLIGDPKQAIYAFRGADIYTYLRARQA--- 446

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                         L  ++RS+  ++  V+ VF   E                +       
Sbjct: 447  ------TDGRWHTLDTNYRSSHAMVASVNHVFRRAEQRTQGRGAFLFRNDQSNQVPFSDA 500

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI------GTD 360
              Q  ++ +    +               +        LA   A  I  ++         
Sbjct: 501  LAQGRKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLAASCASEIVRLLNAGQQGRAG 560

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                +   R ++  DI +LVR  K+   +             SV  +D+  +       D
Sbjct: 561  FAMLDKPLRGLRPADIAILVRDGKEAQAVRQQLSA---RGVRSVYLSDKDSVFAAQEAHD 617

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L++  +     + + +    L     +    ++ ++           E   +        
Sbjct: 618  LLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD--------ELAWERRVMQFRG 669

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            ++ V +    L  + +          ++    G +   +         L E L       
Sbjct: 670  YRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL------HLSELLQQAAAEL 723

Query: 541  QNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                + ++ L   L               ++   V+++T+H +KGL+ P+VFL    S  
Sbjct: 724  DGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSK 783

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                    +    +  +                    LI+        E  RLLYV +TR
Sbjct: 784  PVDGSRLPLQFHDADGNSQISLQPT----------EALIQQADDERLAEDLRLLYVALTR 833

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            +     +   ++      SN       +         + +        +D     +    
Sbjct: 834  SEHACWL-GVADLKRGNASNSMLHRSALGYLLGGGVALAESAELKVWLRDLAQGCDAIAL 892

Query: 718  HPENTPLEREETIKQLMD---------EQKIPKKLFSPIKNDI--------NEPYILNPS 760
             P   P +      +             +       +               +    +P 
Sbjct: 893  QPVPEPTDERFNAPRNEAALVKLLVPKRRAAENWWIASYSALRIGDTVTTGADESPDSPQ 952

Query: 761  TIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV-------IFTLPEHKR 801
                     L+                  +  N G  +H LL+        +      K 
Sbjct: 953  AQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFAVTAHAPDKL 1012

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMTTAMSCDSYS-EVSV-- 851
            ++ +   C +           + L  +  + L          +      + Y  E+    
Sbjct: 1013 QDAVARRCNRRDWAGWINTLSDWLQHMLNMPLRLSPDATPVALGELDQPNQYRIEMEFWF 1072

Query: 852  -SGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTHHH 888
             S  +N  + D ++                       G ID     +   ++ +YK++  
Sbjct: 1073 ASNNVNVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTFEHEGRYYVADYKSNWL 1132

Query: 889  VPQEIEH---------IPYTHIAQLSIYEKILKDS---------YPNKSLVCLLIYVSE- 929
               +  +         +   +  Q  +Y   L            Y       L +++   
Sbjct: 1133 GTDDTAYTELAMETAILDNRYDLQYVLYLLALHRQLKARMADYDYDQHMGGALYLFLRGS 1192

Query: 930  -----PKVFIIPQNKLNKAFAEISTKIP 952
                    F+ P  +L ++   +    P
Sbjct: 1193 RSVSQGAYFVRPPRELIESLDLLFQGKP 1220


>gi|221214244|ref|ZP_03587216.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD1]
 gi|221165899|gb|EED98373.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD1]
          Length = 745

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 106/613 (17%), Positives = 195/613 (31%), Gaps = 128/613 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 225 AALVYRNYVATLHAYQAVDFDDLIRLPTELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 281

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 282 ACQYQLLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 328

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S   +              
Sbjct: 329 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEHGM-------------- 369

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                             + T+  D           A  + +          + ++  +R
Sbjct: 370 --------------GDAITVTACND-------EEHEAESVVFR---------LSAHKFER 399

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 400 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 455

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   I   +
Sbjct: 456 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQIEPLR 515

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 516 MFCDFIQRLTERADKEPASVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 575

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E + + +   L          ++             + + VR+ TVH 
Sbjct: 576 KGTKPETEAVDGEADGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVHA 635

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+             +   PI                   
Sbjct: 636 SKGLEYPHVFLVGVEEGIMPHR----------GGSEDDGPI------------------- 666

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL+YV +TRA   L +         +++        + +   +D      +
Sbjct: 667 DDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETVVCEPSRFIPEMGLDDAPPPTPE 726

Query: 700 LTNSINKDEWIAY 712
                 KD   + 
Sbjct: 727 EAPMTPKDRLASL 739


>gi|303237389|ref|ZP_07323959.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
 gi|302482776|gb|EFL45801.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
          Length = 1112

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 131/858 (15%), Positives = 273/858 (31%), Gaps = 70/858 (8%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            DL +KL +           F + K+    L  L L   ++    +  K+        ++ 
Sbjct: 306  DLPQKLSELVAFNKDNWCEFQSTKLLLKHLPELRLLHKIDEAVNDLNKEYNRF----MLS 361

Query: 155  NTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
            NT  LLK+      + +I  KI  ++ HI+IDE QDTS IQW+   SL  +     ++H+
Sbjct: 362  NTQSLLKELISDSDTPFIFEKIGAQLKHIMIDEFQDTSTIQWQNFLSLLNNCMGQIDSHN 421

Query: 212  SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
                   VGD KQSIY +   +   +   K+       +         L  ++RS   I+
Sbjct: 422  -----LIVGDIKQSIYRWRQGDWSILNNIKQEFPHYQLDLQT------LDYNYRSEKRII 470

Query: 272  TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               +              ++    +            ++   V      +   Q E    
Sbjct: 471  DFNNAFMKAIVENTIQELNNDGINKS-----------EIIGNVYQDVAQKTPKQNELGYI 519

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                 P + S + +  ++  TI ++                   I +L+R+ K    I  
Sbjct: 520  RVQLFPSDDSETDILEQLIKTIQDLFDKG-------YNGKNQSKIAILIRENKQLQKIVD 572

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF--- 448
                     +I++V ++ F L   LA+  ++     +   ED L+   ++K         
Sbjct: 573  TLYAADFGEEINIVSDEAFRLDASLAVNIIIKALHLLTHPEDVLARGELVKLYNQQVLKK 632

Query: 449  --SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI-KYIHELIHIAQFCSPHDFFT 505
              ++ ++        E     +  +      I K    + +               D   
Sbjct: 633  ETTDTELLVATPLDLEETEPEKRHKLSMEHQIEKLNEALPQQYVNRREQLLGMPIIDAVD 692

Query: 506  LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
             I    +   +   +        +    +      Q++ + + + I+E +    +     
Sbjct: 693  SIFEMFE-LTKLEGQNS-----YICTLYDILNDFLQDNTADIDDFINEWDNSLSSKTIQS 746

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK---MHIMPSLNDDPGIPIWI 622
                  +RI+T+H +KGLE   V +      + +   I      +     N  P +PI  
Sbjct: 747  DE-IEGIRIITIHKSKGLEFDNVIIPFCDWTLENSNTIIWCETENKPEPYNKIPILPINF 805

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             +S S   I  D  K        +   LLYV +TRA+  L I     + ++ ++ +    
Sbjct: 806  SKSTSIGTIFEDNYKEEHLQNTIDNLNLLYVAVTRAAKNLFITGKRMSKSKAQNKRNATT 865

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                     +   +        N D    ++                 K    +     +
Sbjct: 866  SSNRSEAIENVLEQISNELEGSNLDLPDKFDEPICFEYGALDHATTEKKAEEVDNPFLIR 925

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR---GLIIHKLLQVIFTLPEH 799
                + N    P  ++    +          +           G I+H++   I    + 
Sbjct: 926  PEKHVVNIKTYPQKVSFRQSNKSKDFVNGEDIDPTDAARYIKNGNILHQIFSTI--YTQK 983

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY--SEVSVSGKINC 857
               + +     +            L   I   L+N  +    S      +E ++  + + 
Sbjct: 984  DIPSKLNELEQEGIIYNDEITTTQLREKIDAALKNKTVQDWFSDKWKLFNECTI-LQYDS 1042

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
               ++    R D++  +     + ++KT          +   H  Q+  Y  +LK    +
Sbjct: 1043 ELDEVREH-RPDRVMTNDNETIVVDFKTG--------IVRKEHKMQVERYMNLLKQM-GH 1092

Query: 918  KSLVCLLIYVSEPKVFII 935
            +++   L Y+ + K+  +
Sbjct: 1093 ENVSGYLWYIMQDKIVEV 1110


>gi|37678224|ref|NP_932833.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus YJ016]
 gi|37196963|dbj|BAC92804.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus YJ016]
          Length = 672

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 217/659 (32%), Gaps = 123/659 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L++ +    +    +          +       L  +   
Sbjct: 112 DQLALLKELTEKQLDGDKDLLRQLMSTISNWKNDMLSPEQAVARAQGEQQ--QLFAFCFE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI+    LL+  D    +R+     I ++L+DE QDT+  Q+E+
Sbjct: 170 MYQKQMKAYNALDFDDLILLPVLLLRGHDE---VRHYWQNRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +             L  VGD+ QSIYS+ GA+P+ ++   +             
Sbjct: 227 VKLLVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGQDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    + +   +  D           A R+   I          ++        +D
Sbjct: 308 ------DGEKLKVLLANNDE--------HEAERVTGEI---------IAHKFLNRTDYRD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----MQNRVPYRLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +    ++
Sbjct: 401 AFLRIVNTPKREIGPVTLEKLGSYANMRGKSLFEASFELGLEQHLTGRGLDNLRRFTHWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTL-----R 538
             +   A+     +    ++                +     +  + +  ++ +      
Sbjct: 461 VAIADQAERGDTVEAVRSLVRDIHYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           N      +L+E++  L       +     + + V++MT+H +KGLE P V+L+ T   + 
Sbjct: 521 NNDQEEKTLKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHASKGLEFPYVYLIGTEEGIL 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL+YVG+TRA
Sbjct: 581 PHQTSID-----------------------------------EDNVEEERRLMYVGITRA 605

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             +L            +  + +    + +   +D   ++ K   +  +          +
Sbjct: 606 QRELTFVMCKERRQYGELIKPSQSRFLDELPFDDVEWEQTKKPVTQEERMAKGQAHIAN 664


>gi|111018834|ref|YP_701806.1| exodeoxyribonuclease V beta subunit [Rhodococcus jostii RHA1]
 gi|110818364|gb|ABG93648.1| exodeoxyribonuclease V beta subunit [Rhodococcus jostii RHA1]
          Length = 1103

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 128/884 (14%), Positives = 250/884 (28%), Gaps = 152/884 (17%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            +  A+ + A  E  K+   + DF+DL +  + +L   +  A    ++ +    +L+DE Q
Sbjct: 210  VAFAEAVRAEVERRKRAVGLRDFDDLPMLLHRVLSDPEHGAAACRRVRERYGVVLVDEFQ 269

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +QW+++R                 T+  VGD KQ+IY+F GAE    L   R    
Sbjct: 270  DTDPLQWDILRRTFH----------GSGTVVLVGDPKQAIYAFRGAEVLSYLDAVR---- 315

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                        EL  ++RS  ++L  ++ +      A G  E     +     +    G
Sbjct: 316  ------SADRHQELTTNWRSDQELLDGLEYL--HGGAALGHPEIVVHRVDGARPKSRLTG 367

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
               L  + + +  +    +              +  +     +        G  T+   G
Sbjct: 368  AAPLRLRYLPRTGAGPINKSGYPAVGPLRKRIAADLAADVVALLD------GGATLDVGG 421

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R+++  DI VLVR      L+        +   +  V      +    A +  + + +
Sbjct: 422  DTRLVEPGDIAVLVRTNAQITLVHDAL----DRAGVPSVLAGGASVFTTPAAQHWLWILQ 477

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             I              +PL   + +++      R +        Q      +        
Sbjct: 478  AIEQPHRSDRVRLAALTPLLGHTAEELD----ARGDDIVAEVGGQLRELGAVFAQSGFAA 533

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS--- 543
                L               +L    G +          +  + + LN     +      
Sbjct: 534  LFERLSA------VAALEARLLRVAAGERALTD------LRHVAQLLNGAAVEQSLGLTA 581

Query: 544  -YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                L E + +         R   ++   V+I TVH +KGLE P+V+L          K 
Sbjct: 582  VTRWLTERMKDPSSGGVDRSRRLDSDAAAVQIATVHASKGLEFPLVYLPYAWDAAKISKP 641

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
             K +      +DD G  I            +D           E  RLLYV +TRA   L
Sbjct: 642  SKLLL-----HDDDGRRILDVGGPGSPG-YADRRNRHDAEEAGEELRLLYVAVTRAMCGL 695

Query: 663  IICKHSNTSNEKKSNQRTWYDM-------------------VYDSFHNDERVKKIKLTNS 703
            ++      +       R                                    +     +
Sbjct: 696  VVWWAPAFTTAGAPLHRMILGRQPGQREVPQKVTVPEDPVVAERLSAWGTAAPETVTVEA 755

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
            +  D  +   W+        LE     ++L+D +       +   +  + P + + + ++
Sbjct: 756  VGSDPIVRVGWTPQREPRGDLEAAR-FRRLLDTRWRRTSYSALTASAHDAPAVGSEAEVE 814

Query: 764  TKGKTNLESLLSDNQ---------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
             K     E  L                       G ++H + +++ T         +   
Sbjct: 815  EKTDEPAEPPLQAPADITSGVASTMNELPGGATFGTLVHAVFEIVDTAAPDLDAEVLRCC 874

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSVSGKINCPKKD 861
                A      +   L  ++  +L  P+       +      D  +E+     +      
Sbjct: 875  RDVIASTLSDIDPAQLATALLPVLRTPLGAGAETTLADIAPADLLAELDFELPLAGGDTP 934

Query: 862  ---------------------------------------IIISGRIDQISISQQ-NIFIF 881
                                                     ++G ID +         + 
Sbjct: 935  SLTVMLDGVGELLRTHLPVDDPLRSYADAVQTLEPTPLRGYLTGSIDAVLRLPGPRYVVV 994

Query: 882  EYKTHHHVPQE------------IEHIPYTHIAQLSIYEKILKD 913
            +YKT+     +             E +   +  Q  +Y   L  
Sbjct: 995  DYKTNRLAQGDLTTAHYTRESMAAEMVRAHYPLQALLYSVALHR 1038


>gi|330971986|gb|EGH72052.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. aceris
            str. M302273PT]
          Length = 1230

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 129/1001 (12%), Positives = 278/1001 (27%), Gaps = 150/1001 (14%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            +   +            +  L   FT        E  K  P      +        +   
Sbjct: 268  KPWFEKLAAWAADDTQEALDLGTGFTRLTPEGIAEAWKGDPPAHPAFEAMAQLKAALDGL 327

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                            A++++  +EE K++   + F+D+++  +  L        +   I
Sbjct: 328  PK-----PDAAVLQHAAQWVSVRFEEEKRRRAEMGFDDMLLRLDAAL-HGAGGERLATLI 381

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F GA+
Sbjct: 382  REQFPVALIDEFQDTDPVQYRIFDSIYR-----LEANDEQTGLFLIGDPKQAIYAFRGAD 436

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                LR ++                 L  ++RS+  ++  V++VF++ E  +        
Sbjct: 437  IYTYLRARQA---------TDGRWHTLDTNYRSSHAMVESVNRVFTLAEQREQGRGAFLF 487

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H +         Q  ++ +    +               +        LA   A  I
Sbjct: 488  RDEHGNQVPFSDALAQGRKETLHVDGAPLTALTVWHLQSDQPVSGVVYRQQLAASCASEI 547

Query: 354  SNMIGTDTIFSNGKK------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
              ++      S G        R ++  DI +LVR  K+   +             SV  +
Sbjct: 548  VRLLNAGQQGSAGFVTPDSTLRGLRPADIAILVRDGKEAQAVRQQLTA---RGVRSVYLS 604

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            D+  +       DL++  +     + + +    L     +    ++ ++           
Sbjct: 605  DKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD-------- 656

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
            E   +        ++ + +    L  + +          ++    G +   +        
Sbjct: 657  ELAWERRVMQFRGYRAIWRSQGVLPMLRRLLHDFALPQTLMTRNDGERVLTNLL------ 710

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             L E L           + ++ L   L               ++   V+++T+H +KGL+
Sbjct: 711  HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQ 770

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             P+VFL    S          +    +            +S+        LI+       
Sbjct: 771  YPLVFLPFICSSKPVDGSRLPLQFHDADG----------KSQISLQPTEALIQQADDERL 820

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             E  RLLYV +TR+     +   ++      +        +         + +    N  
Sbjct: 821  AEDLRLLYVALTRSEHACWL-GVADLKRGNANTSMLHRSALGYLLGGGAALAESAELNIW 879

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN------ 749
             +D           P   P +   +  +             +       +          
Sbjct: 880  LRDLAQGCGAIALQPVPEPTDERFSAPRNAAALVKLLVPKRRAAENWWIASYSALRIGDT 939

Query: 750  --DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQVIFT 795
                 +    +P          L+                  +  N G  +H LL+    
Sbjct: 940  VTAGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGN 999

Query: 796  L-------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMTTAM 841
                       K ++ +   C +           + L  +  + L          +    
Sbjct: 1000 EGFANTAHAPDKLQDAVARRCNRRGWAGWINTLSDWLQHLLNMPLRLSPDAAPVALGELD 1059

Query: 842  SCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQISISQ 875
              + Y  E+     S  +N  + D ++                       G ID     +
Sbjct: 1060 QPNQYRVEMEFWFASNNVNVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE 1119

Query: 876  QNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSIYEKILKDS---------YPN 917
               ++ +YK++     +  + P           +  Q  +Y   L            Y  
Sbjct: 1120 GRYYVADYKSNWLGSDDSAYTPLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQ 1179

Query: 918  KSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
                 L +++           F  P  +L ++   +    P
Sbjct: 1180 HMGGALYLFLRGSRSASQGAYFTRPPRELIESLDLLFQGKP 1220


>gi|332142120|ref|YP_004427858.1| exodeoxyribonuclease V, beta subunit [Alteromonas macleodii str.
            'Deep ecotype']
 gi|327552142|gb|AEA98860.1| exodeoxyribonuclease V, beta subunit [Alteromonas macleodii str.
            'Deep ecotype']
          Length = 1336

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 135/1034 (13%), Positives = 295/1034 (28%), Gaps = 173/1034 (16%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
             +   S + S   + K L          + + +  +         + A            
Sbjct: 242  RQLDESPHTSVAYV-KTLSQSVEDNEGLLVEQLIKTPAHKKERPQELAALKSWLRSCADS 300

Query: 63   EERF--SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             + +     +  F+      + +   +EI     +    LKK         ++       
Sbjct: 301  GQYYLPPPEAEAFVKGTRYARNSSGVKEILTPIKEFATALKKVFG------EKDKALAKV 354

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA--WIRYKIDQEIN 178
                  +    ++    ++ KK+  V+DF+DLI     +L    V     +  ++ ++  
Sbjct: 355  PVFKLVIEAIAFIKGRVDKQKKQLGVIDFDDLI----RMLADEVVKPNNTLVPELRKKFP 410

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFV--------------GKNTHSSPRTLFAVGDEKQ 224
              LIDE QDT   Q+ ++ ++  +                  ++  +    L  +GD KQ
Sbjct: 411  VALIDEFQDTDAKQYAILDAVYPNASSNSASQTETDLSNDNEESASARVSALLMIGDPKQ 470

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            +IY F G +    L+  R          Q      +  ++RS   ++   +++F     A
Sbjct: 471  AIYRFRGGDIFTYLKAGR----------QADYRWVMNTNWRSVEGMVKAYNRLFYGAPVA 520

Query: 285  QGLSEDSTTT-IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                 D     I++                                    +         
Sbjct: 521  SNTPTDVFGFDIKYNPVEFTPKAAAAKTPLRDPAAQRSAMNYVS--LCLEEKENTNIMRR 578

Query: 344  ILARRIAYTISNMIGT-DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
             +A+ IA  I  ++        NG+ + ++ +DI +LV+ R +   I  + +        
Sbjct: 579  KMAQWIAQEIYRLLNEAQFQLDNGETKPVKPQDIAILVKDRTEAGAIKNVLQ---QKGLA 635

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
             V  +DR  L      KD++ L   I    D  +    L SPL+ +S   + ++     +
Sbjct: 636  CVYLSDRSNLFASAEAKDVLRLLNGIWHANDTSNVSSSLASPLWGYSPQTLIELLYHEDD 695

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                    +  +   +   +  +  +  L+  + +    D     L   +          
Sbjct: 696  AMWDKAMDKVLSLRDMWLQKGCMSVLLHLMQDS-YVPHADNVERALTNYQ---------- 744

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTA 580
                  L E L       Q     L  L  ++   +    +     ++   +R++T H +
Sbjct: 745  -----HLAEVLEKASTTHQRPEQLLDWLNKQIHKPESDEELTLRLESDSQLIRLITQHGS 799

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE P+VF+        + K+ K    + +  D+          + +    +  I  ++
Sbjct: 800  KGLEYPIVFVPYATGYKDASKNGKSTSQIFTFYDED-----KQDLQMQLGQTAQAIARVQ 854

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-----------RTWYDMVYDSF 689
            + ++ E  RL YV +TRA+ +  +      +NEK +                +  V    
Sbjct: 855  RESEAEDMRLAYVAVTRAAHRCYMGVIPLANNEKSALARALGLSGDESTNRDWPSVLRRV 914

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
              ++      +     ++ +  +E     P+ T L+   T  +                 
Sbjct: 915  AEEDESHASYIDGDEFEEIYSGFEQGDAIPQLTALQFTGTASEEWRLYSFSAMSRLTTVG 974

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSDN-------------------------------- 777
             +     +  +         L ++  +                                 
Sbjct: 975  SVKSTDTVEGAGQSLPSVPVLRTVRDEEVYALDTLSTDGEILGAIDVDSHTPLTQTSAVT 1034

Query: 778  ---------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                     +  + G ++H +L+          +        +       K    L   +
Sbjct: 1035 KNDLRFTLEKGASAGNLLHDILEH-SDFSAPVWEETGKELVNRFG--LEEKRTPFLYEWL 1091

Query: 829  TRLLENPMM-------TTAMSCDSYSEVSVSGKI-------------------------N 856
              +L+ P+        +      +  E      +                          
Sbjct: 1092 EEVLQTPLYPNVQLCMSDLTLEQTLREAEFYFPMNDTQWKQLREVLNTHRQSVAETLGGE 1151

Query: 857  CPKKDIII--------SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT--------- 899
                  +I         G ID I       F+ +YK+         ++P           
Sbjct: 1152 AEPAPQLITAKLKGMMHGFIDLIFEHDGQFFVADYKSTWLGDTLESYMPSALFHNNQHHL 1211

Query: 900  HIAQLSIYEKILKD 913
            +  Q  IY   L  
Sbjct: 1212 YDLQYLIYCLALHR 1225


>gi|302669183|ref|YP_003832333.1| ATP-dependent DNA helicase UvrD/REP family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302396847|gb|ADL35751.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 718

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 104/543 (19%), Positives = 173/543 (31%), Gaps = 112/543 (20%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LD+ DLI  T  + ++      I+ K  + + +I+IDE QD   +Q+E++  L       
Sbjct: 193 LDYNDLIKFTLYIFRENPD---IKLKWQKRLEYIMIDEFQDIDSLQYELMEVLAGY---- 245

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                  + LF VGD  Q+IY++ GA  K +L   +               I +  ++RS
Sbjct: 246 ------HKNLFIVGDPDQTIYTWRGANVKYLLDFDQNFP--------SVKTIMMNDNYRS 291

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  IL  V+ +                                L   +       C+   
Sbjct: 292 TPQILYAVNSLIDKNRYRIKK---------------------DLLPTIAEGESVLCHLAP 330

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                         + +  A  I   I  + G            +Q KDI +L R    T
Sbjct: 331 --------------NTTEEADWITGEILVLKGLG----------VQYKDITILYRAHYVT 366

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             I       K    I               IKD +   R ++   DD+SF  +   P  
Sbjct: 367 RTIEEGLMKEK----IPYTIYSGVQFFGRTEIKDALCYLRMLV-YRDDISFRRIANVPKR 421

Query: 447 NFSEDDIFKI-CTQRHETETVYEYIQKFANCGI---SKFQHVIKYIHELIHIAQFCSPHD 502
           N  +  +  +         ++Y  + +  +  +   +K    I  I       +     +
Sbjct: 422 NLGKRRMSFLEQYAADNKCSLYAALHENLDNELFKGTKAGKFIDLIEHFAASYEGLPVSE 481

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               IL      +   +    + +D L E        E      +  L   L+       
Sbjct: 482 VLAKILNNSGYEEMLRTEGAQDRLDNLAELKQSVFEYETTCGEEV-GLEDYLKHIALFTN 540

Query: 563 RAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
               A + ++VR+MTVH AKGLE P VFL      +F  + ++ +               
Sbjct: 541 ADSDAGDQDKVRLMTVHAAKGLEFPYVFLCGMNEGIFPSRKVRTL--------------- 585

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                                  EE  RL +V MTRA  +L I +    + E      + 
Sbjct: 586 --------------------EGMEEERRLAFVAMTRAQKRLFITEAGGNTFEGIPRYPSR 625

Query: 682 YDM 684
           + M
Sbjct: 626 FIM 628


>gi|91790119|ref|YP_551071.1| UvrD/REP helicase [Polaromonas sp. JS666]
 gi|91699344|gb|ABE46173.1| UvrD/REP helicase [Polaromonas sp. JS666]
          Length = 716

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 100/602 (16%), Positives = 194/602 (32%), Gaps = 118/602 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   + AHYEE       +DF+DLI     LL++ +    +R K  Q + H+L+DE QD
Sbjct: 179 RLVARVMAHYEERLTAYQSVDFDDLIGLPLKLLREHEA---VRNKWQQSLGHVLVDEYQD 235

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+EV++ L            +     AVGD+ QSIY + GA    + +        
Sbjct: 236 TNATQYEVLKLLVG----------TRGRFTAVGDDDQSIYGWRGATLDNLKKLPEDYPN- 284

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +++L  ++RST+ IL   + V                              
Sbjct: 285 -------LKVVKLEQNYRSTSAILRAANNVIGPNPK------------------------ 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             L+ + +     +  P +              S    A R+   I ++     + + G 
Sbjct: 314 --LFPKTLFSELGEGEPVRVV---------DCDSEEHEAERVVARIQSLRAGGELQAVGS 362

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +   + KD  VL R       +    R      +I    +      D   IKDL +    
Sbjct: 363 QYK-EWKDFCVLYRANHQAKPLEKAFR----KAQIPYKVSGGQSFFDRAEIKDLCSWMVL 417

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           +++ +++ +F+  + +P        +  +         +++E +             +  
Sbjct: 418 LVNNDNNPAFMRSVTTPKRGIGHTTLGTLGTFADQYKLSLFEALFSNSLSSVLPAKAVGS 477

Query: 481 FQHVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDE 531
            Q   +Y++EL + A+     +    F    L      +       +E         + +
Sbjct: 478 LQEFGRYLNELEYRARRTVGAEDARTFLNDWLKEIDYEKHLYDGEDSEKVAAARWSNVMD 537

Query: 532 FLNFTL------------RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           F ++                 ++   ++ E++  +             + N V + T+H 
Sbjct: 538 FCDWMALRCGGQIDDTSGAVVESEKKTMLEVVQTIALLS--TISEREGDQNVVTLSTLHA 595

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P V L      +   K  +                                   
Sbjct: 596 SKGLEWPHVMLAGCNEGLLPFKLEEDDGSNTD---------------------------N 628

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                +E  RL+YVG+TRA   L +         + +        + +   +   VK+  
Sbjct: 629 IALRLQEERRLMYVGITRAQRTLAVNWLRRRKKNRDTIAGIPSRFIAEMALDKATVKEDP 688

Query: 700 LT 701
             
Sbjct: 689 RE 690


>gi|154497927|ref|ZP_02036305.1| hypothetical protein BACCAP_01905 [Bacteroides capillosus ATCC
           29799]
 gi|150272917|gb|EDN00074.1| hypothetical protein BACCAP_01905 [Bacteroides capillosus ATCC
           29799]
          Length = 717

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 102/636 (16%), Positives = 197/636 (30%), Gaps = 118/636 (18%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LD+ DLI  +  + +K +    I+ K  Q + +I+IDE QD   +Q++++  L       
Sbjct: 194 LDYNDLIKFSLYIFQKHED---IKLKWQQRLEYIMIDEFQDIDQLQYQLMEVLCGY---- 246

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                  + LF VGD  Q+IY++ GA+ K +L   R               I +  ++RS
Sbjct: 247 ------HKNLFIVGDPDQTIYTWRGADVKYLLEFDRRFP--------GVKTIMMMENYRS 292

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T +IL   + +    +     +   T             G   L                
Sbjct: 293 TPEILAAANALIDKNKYRISKALIPTLP----------PGAPVLCHL------------- 329

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                         +    A+ +   +  +              +  +D+ VL R    +
Sbjct: 330 ------------GETQEAEAKWMVGEMEQLHSQG----------VPYRDMTVLYRAHYVS 367

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +  +        KI             + IKD ++  R I+  +DDLSF  +   P  
Sbjct: 368 RSVEEVL----LQSKIPYTIYSGVQFFGRMEIKDALSYLRMIV-YKDDLSFRRIANVPKR 422

Query: 447 NFSEDDIFKI-CTQRHETETVYEY---IQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           N  +  +  +         T+Y+      +      ++ Q  +  I       +     +
Sbjct: 423 NLGKRRMAFLEEYAEKNGRTLYQSLLDNLEDPVFKGTRAQAFVSLIEAFAAGYEGRPISE 482

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
             + IL      +   +  G E +D L E        E         L   L        
Sbjct: 483 VLSAILNESGYEKMLRTEGGQERLDNLAELKQSVYEYETTCGEE-TTLEHYLAHIALFSN 541

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                  ++V++MTVH AKGLE   VFL      +F  + ++ +                
Sbjct: 542 SDTGDQGDKVKLMTVHAAKGLEFLYVFLCGMNEGIFPSRKVRTL---------------- 585

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                 EE  RL +V +TRA   L + + +  + +      + +
Sbjct: 586 -------------------QGMEEERRLAFVALTRAEKGLYLSEANGRNFDGSPRYPSRF 626

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            +       D   + +  T    +       ++    E    E +  I   + ++   + 
Sbjct: 627 LL-------DIDQELLTYTRPPEEGLIREARYAIASSERYLPEDDSAITFSVGQRVRHQM 679

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                  +++     +    D        S  +  +
Sbjct: 680 FGLGTILEVDRERGAHVVQFDEMATPRRISFRAKLE 715


>gi|189500494|ref|YP_001959964.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
 gi|189495935|gb|ACE04483.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1]
          Length = 1054

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 143/962 (14%), Positives = 301/962 (31%), Gaps = 137/962 (14%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
            + I +++          + + +++         L      + + +T            + 
Sbjct: 190  DRIEEEVLSEITLLKKKVQEDLAIKPLKNTRRYLDALLHFEHSLETATFA-----WKEWL 244

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
               +  P+K++  +          + L ++      +        +        ++A   
Sbjct: 245  KMAREKPRKDLHEKTER------LDMLCRNVVSHPGLHR-----DIRDYLSKIFSVASLT 293

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
               Y++ K++  ++DF D      + L        +R  ++++++ +L+DE QDTS IQ 
Sbjct: 294  LGIYQQQKQEMGLVDFADQEFRLLEGLDNP----LVRSHLEEKLHLLLVDEFQDTSPIQL 349

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +   L+          S  R  F VGD KQ+IY F G + + +                
Sbjct: 350  ALFLKLS----------SLARRTFWVGDIKQAIYGFRGGDARLMQAVLNFLP-------- 391

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              S   L  S+RS   ++  V+ VF                        G+    +  E 
Sbjct: 392  DGSKEVLGQSWRSVPSLVCAVNAVFCRSF--------------------GETLARENIEL 431

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRV 370
            +  + +         W      L Q+  A      +A  +  ++         K    R 
Sbjct: 432  MPERQEHSSQGSCFRWDLGAGGLEQQYEA------LAAGVQRLVDEGFEVFEKKEEVWRK 485

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++  DI +L R       I  + +       I         L        L A  R ++ 
Sbjct: 486  VRFGDIAILSRTNAHVQKIAAILK----QNGIPAATAQP-GLLGSPEGLFLTAGLRRLID 540

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              D L+        L++ +     ++  Q    +                   V++ I  
Sbjct: 541  PSDTLATAE-----LYSLATCSEPEVWLQNRLDDLESGNDPDRWLEEGKNAHPVLREIAL 595

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRNEQN--- 542
            L   +   SP D    ++ A    +  ++           +  +   L      E+    
Sbjct: 596  LRDRSLVLSPFDVVKALVSATGAARYLLAWCRDVDMARMRLSNMQSLLQLAGEYEEECDT 655

Query: 543  --SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                ++LQ L+   EQ              N VR++T HT+KGLE PVV L+D      +
Sbjct: 656  KGGTATLQGLVHWYEQLAAEENDLFPEPPVNAVRVLTYHTSKGLEWPVVVLLDLDKPGNA 715

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL------------IKHLKKSTQEEY 647
                  +     ++    +     +      + S+              +   + +++E 
Sbjct: 716  DLCSPVIDSPQDVDAGAPLKDRFIRFWPSPFVKSEPFPGLESVIQSREARQAAELSRDES 775

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             RLLYV MTRA D L++     TS++ KS              +++    +   + +   
Sbjct: 776  ARLLYVAMTRARDCLVL----GTSSKSKSFPWLEQAGAACFVTDEDDGIVLPDGSRLPCK 831

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
             W     ST             +     E+                P  + PS +  + +
Sbjct: 832  RWENLNEST------------LLNPAGKERTPLFWYAPVEPPSERLPEQVVPSLLRAETE 879

Query: 768  ---------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
                     +   +L  + +   +G ++H +L    T           +   +       
Sbjct: 880  ATAVESIVYSGTMNLHGNMEATEKGTVVHDILAFALTQEPDVCDAASVATLLEGYGAAAL 939

Query: 819  KEYKNLLL---SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
             E ++L+       R+L             + E  V   +       ++ G+ID +  ++
Sbjct: 940  CEPESLVRQLGEFRRMLSERWPDCMF----HIEAPVEQLLPVE---QVLKGQIDLLLETR 992

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFI 934
            +   I ++K       + E     +  QL  Y++ L+     K +  C + + +   +  
Sbjct: 993  RGWVIIDHKITTIERCQWEQKAIEYSGQLFAYKQALE-MVTGKPVESCWIHFFAAGGLVG 1051

Query: 935  IP 936
            + 
Sbjct: 1052 LD 1053


>gi|326771959|ref|ZP_08231244.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505]
 gi|326638092|gb|EGE38993.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505]
          Length = 957

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 115/826 (13%), Positives = 221/826 (26%), Gaps = 165/826 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  +      +   +      A  L+         +  
Sbjct: 168 AAAEMRERVTALVGPAGERMWVSTFHSACVRILRREHE-----AAGLRSTFSIYDAADS- 221

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           + L +  + +     K    +    +  DLK +L          +               
Sbjct: 222 TRLITLIVRELGIDPKRFTPKTFAHRISDLKNEL------ITPAQFAERAVTSNPLERHL 275

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +       LDF+D+I+ T  LL+ R     +     +   HIL+DE Q
Sbjct: 276 ----AEVYRAYAQRLSAANALDFDDIIMRTVSLLQTRPA---VAEMYRRRFCHILVDEYQ 328

Query: 187 DTSLIQWEVIRSLTEDF-FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           DT+  Q+ ++R L       G  +   P  L  VGD  QSIY+F GA  + +   +    
Sbjct: 329 DTNHAQYVLVRELVGGPGTSGAGSALPPGELTVVGDSDQSIYAFRGATIRNIEEFEEDYP 388

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I L  ++RST +IL+  + V S     +  +                 
Sbjct: 389 --------SARTILLEQNYRSTQNILSAANAVISRNSGRREKN----------------- 423

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW        +  +    +            S    AR I+  +  +         
Sbjct: 424 ----LW-------TAAGDGAPITGYVA-------DSEHDEARWISQEVDRLADE------ 459

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                ++ +D+ V  R    +  +                        D   IKD +A  
Sbjct: 460 ---HGVRPRDVAVFYRTNAQSRALEEAF----MRAGQPYKVIGGTRFYDRREIKDAIAYL 512

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK---- 480
           R + + +DD++   +L  P     +     +         +  + +   A          
Sbjct: 513 RAVDNPDDDVNLRRILNVPKRGLGDKAEGALAEHAARYAVSFGQAVADAAGAPREAQTDG 572

Query: 481 ------------------------------FQHVIKYIHELIHIAQFCS-PHDFFTLILG 509
                                          +   + +  L H+        D     L 
Sbjct: 573 TENTDGQDTSTTGAGEPPEVEGLTTRARNQVRGFHELLTTLRHMVTAGDGVADVLDSALD 632

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYP------- 558
           A     +  +    +    ++ L E  +     +  +    L + +  +           
Sbjct: 633 ASGYLAELRASDDPQDATRVENLAELHSVASDFQAANPDGTLADFLERVSLVADSDQLPP 692

Query: 559 ----PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                      +    ++ +MTVHTAKGLE PVVF+       F H          +   
Sbjct: 693 SADLEDEDARQAEEQGQITLMTVHTAKGLEFPVVFVTGMEDGTFPHARSLTEETELAEER 752

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                              L YV +TRA ++L + + +  S   
Sbjct: 753 R----------------------------------LAYVALTRARERLYLTRAAVRSAWG 778

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
            +N       + D        K++  +    +     +  S          R     +  
Sbjct: 779 AANAMPASRFLDDVPDETIDWKRLTSSMEALRGGGTGWGSSWGEGGFGSGGRRSGSSRQS 838

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
                      P+         L    ++T      +   +  +  
Sbjct: 839 SYSDDDD-FAPPVGAGTKRLGKLG--RVETAQDRAAKRASARLEAR 881


>gi|238899306|ref|YP_002924989.1| Rep helicase, a single-stranded DNA-dependent ATPase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229467067|gb|ACQ68841.1| Rep helicase, a single-stranded DNA-dependent ATPase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 676

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 110/731 (15%), Positives = 229/731 (31%), Gaps = 142/731 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMET-GNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +  D+          I+ + +L +E                    Q      
Sbjct: 62  AAREMKERV-ADILGRKETFGLIISTFHALGLEIIRAEIAQLNIGPTFSLFDAQDQWTLL 120

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L+   L    T            +   L + +   ++         ++ +  +     
Sbjct: 121 KELTETCLNNDKT------------QLEALVKAISHWKNHLTCPEAALSSAQTDQEKQ-- 166

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                Y    Y++  K   VLDF+DLI+    LL+       +R +    + ++L+DE Q
Sbjct: 167 ---LAYCYGLYDDHMKACRVLDFDDLIVLPTRLLRNN---KDVRERWQNRLRYLLVDEYQ 220

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+++++ L                   VGD+ QSIYS+ GA+P+ +   K    +
Sbjct: 221 DTNSSQYQMVKLLVGQ----------RARFTVVGDDDQSIYSWRGAQPQNLSLLKEDFPQ 270

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RS+  IL V + + +   +       ST              
Sbjct: 271 --------LKVIKLEQNYRSSGRILKVANVLIANNPHVFQKQLFSTLA------------ 310

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                        +    +    A  +   I          ++ 
Sbjct: 311 -----------------------YGEHLKVITADNEDHEAEHVVNEI---------ITHQ 338

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
             R  Q  +  +L R    + L       L   +++    +          IKD +A  R
Sbjct: 339 LMRKTQYGEYAILYRGNHQSRLFEK----LLLQHRLPYHISGGDSFFARPEIKDFLAYLR 394

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGIS 479
            + +  DD +F+ ++ +P        I K+        +++++           +   + 
Sbjct: 395 LLTNPSDDRAFLRVVNTPKREIGVTTIQKLSQWAHQRRKSLFQASFDLGLSQFLSARSLD 454

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLN 534
             Q    ++ ++  +A      D  + +L     +  F             I  +D    
Sbjct: 455 SLQRFSHWMEKIRRLADTDPL-DAISELLSGIDYKHWFKDSAPSPKAAEVRIKNVDLLFK 513

Query: 535 FTLRNEQN----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           +     +        +L ++++         K+ +    N V++MT+H +KGLE P VFL
Sbjct: 514 WMTEMLRGSDLYEPMTLIQVVTRFTLNDVLEKKENEGQANRVQLMTLHASKGLEFPYVFL 573

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V     +  H+                                       + + EE  RL
Sbjct: 574 VGMEEGLLPHQTSID-----------------------------------EDSIEEERRL 598

Query: 651 LYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            YVG+TRA ++L   +C+      E      + + +       D   ++ +++     + 
Sbjct: 599 AYVGITRAQNELYFSLCRERRQYGECIPQTPSRFLLELPQDDLDWESRQKEISTEERMER 658

Query: 709 WIAYEWSTHHP 719
              +  +    
Sbjct: 659 SEGHLAALRAQ 669


>gi|330891622|gb|EGH24283.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. mori
            str. 301020]
          Length = 1230

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 126/1004 (12%), Positives = 275/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +     E          LT +   +        +           ++  +    
Sbjct: 272  EKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAF--------EAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDSLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HSAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEGNDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQ---------PTDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA   A
Sbjct: 485  FLFRDDQGNQVPFSDALAQGRKETLEVEGAPLTALTVWHLESEQPVSGVIYRQQLAASCA 544

Query: 351  YTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++             +   R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFAMLDKPLRGLRPADIAILVRDGKEAQAVRQQLSA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  +            ++    G +   +     
Sbjct: 657  ---ELAWERRVMQFRGYRAVWRSQGVLPMLRCLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +  +                    LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADGNSQISLQPT----------EALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      SN       +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNASNSMLHRSALGYLLGGGVVLAESAEL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKNDI- 751
                +D     +     P   P +   +  +             +       +       
Sbjct: 877  KVWLRDLAQGCDAIALQPVPEPTDERFSAPRNEAALVKLLVPKRRAAENWWIASYSALRI 936

Query: 752  -------NEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTTGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  -------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                   +      K ++ +   C +           + L  +  + L          + 
Sbjct: 997  AGNEGFAMTAHAPDKLQDAVARRCNRRGWAGWINTLSDWLQHMLNMQLRLSPDATPVALG 1056

Query: 839  TAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQIS 872
                 + Y  E+     S  +N  + D ++                       G ID   
Sbjct: 1057 ELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS--------- 914
                  ++ +YK++     +  +         +   +  Q  +Y   L            
Sbjct: 1117 EHDSRYYVADYKSNWLGTDDTAYTELAMETAILDNRYDLQYVLYLLALHRQLKARMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F+ P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSVSQGAYFVRPPRELIESLDLLFQGKP 1220


>gi|325066848|ref|ZP_08125521.1| ATP-dependent DNA helicase PcrA [Actinomyces oris K20]
          Length = 649

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 100/648 (15%), Positives = 184/648 (28%), Gaps = 127/648 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  +      +   +      A  L+         +  
Sbjct: 58  AAAEMRERVTALVGPAGERMWVSTFHSACVRILRREHE-----AAGLRSTFSIYDAADS- 111

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           + L +  + +     K    +    +  DLK +L          +               
Sbjct: 112 TRLITLIVRELGIDPKRFTPKTFAHRISDLKNEL------ITPAQFAERAVTSNPLERHL 165

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +       LDF+D+I+ T  LL+ R     +     +   HIL+DE Q
Sbjct: 166 ----AEVYRAYAQRLSSANALDFDDIIMRTVALLQTRPA---VAEMYRRRFRHILVDEYQ 218

Query: 187 DTSLIQWEVIRSLTEDF-FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           DT+  Q+ ++R L       G  +   P  L  VGD  QSIY+F GA  + +   +    
Sbjct: 219 DTNHAQYVLVRELVGGPGTSGAGSALPPGELTVVGDSDQSIYAFRGATIRNIEEFEEDYP 278

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I L  ++RST +IL+  + V S     +  +                 
Sbjct: 279 --------SARTILLEQNYRSTQNILSAANAVISRNSGRREKN----------------- 313

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW        +  +    +            S    AR I+  +  +         
Sbjct: 314 ----LW-------TAAGDGAPITGYVA-------DSEHDEARWISQEVDRLADE------ 349

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                I+ +D+ V  R    +  +                        D   IKD +A  
Sbjct: 350 ---HGIRPRDVAVFYRTNAQSRALEEAF----MRAGQPYKVIGGTRFYDRREIKDAIAYL 402

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISK---- 480
           R + + +DD++   +L  P     +     +         +  + +   A          
Sbjct: 403 RAVDNPDDDVNLRRILNVPKRGLGDKAEGALAEHAARYAVSFGQAVADAAGAPREAQTGE 462

Query: 481 -----------------------------FQHVIKYIHELIHIAQFCS-PHDFFTLILGA 510
                                         +   + +  L H+        D     L A
Sbjct: 463 TENADGQASSSGAGEPPEVEGLTTRARNQVRGFHELLTTLRHMVTAGDGVADILDSALDA 522

Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYP-------- 558
                +  +    +    ++ L E  +     +  +    L + +  +            
Sbjct: 523 SGYLAELRASDDPQDATRVENLAELHSVASDFQAANPDGTLADFLERVSLVADSDQLPPS 582

Query: 559 ---PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                     +    ++ +MTVHTAKGLE PVVF+       F H   
Sbjct: 583 ADLEDEDARQAEEQGQITLMTVHTAKGLEFPVVFVTGMEDGTFPHSRS 630


>gi|194734421|ref|YP_002116848.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197301058|ref|ZP_02663427.2| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194709923|gb|ACF89144.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288746|gb|EDY28121.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|267996194|gb|ACY91079.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|323132265|gb|ADX19695.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326625637|gb|EGE31982.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 707

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 104/670 (15%), Positives = 216/670 (32%), Gaps = 121/670 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 144 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 201

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 202 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 258

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 259 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 300

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 301 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 337

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 338 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 376

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 377 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 432

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        ++++         QK    G         +
Sbjct: 433 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 492

Query: 488 IHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +A+        D    I       +   S    E  +  +++  ++        
Sbjct: 493 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 552

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 553 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 612

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 613 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 637

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 638 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 697

Query: 720 ENTPLEREET 729
                +R ++
Sbjct: 698 AMMAAKRAKS 707


>gi|188579666|ref|YP_001923111.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179343164|gb|ACB78576.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 798

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 102/651 (15%), Positives = 193/651 (29%), Gaps = 114/651 (17%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+        +DF DL++    L ++      I         +IL+DE QDT++ 
Sbjct: 212 QLYAAYQARLATLNAVDFGDLLLLCLKLWRENPD---ILANYQDRFRYILVDEYQDTNVA 268

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          + + +  VGD+ QSIY + GAE   +LR +          
Sbjct: 269 QYLWLRLLAQ----------ARKNVACVGDDDQSIYGWRGAEVDNILRFEHDFP------ 312

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +++ L  ++RST  IL     + +  E   G +                       
Sbjct: 313 --GATVVRLERNYRSTGHILAAASGLIAKNEGRLGKTL---------------------- 348

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  + T  +DS  +       AR++A +I ++               
Sbjct: 349 ------RTEDEAGEPVTVTGAWDSEEE-------ARQVAESIESLQRRGHPL-------- 387

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VLVR       I            +           +   I+D +A  R  ++ 
Sbjct: 388 --SEIAVLVRISAQMREIEDRF----VQVGLPYRVIGGPRFYERAEIRDALAYLRVTMNG 441

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHV 484
            DDL+F  +  +P     +  +  +    R +   +     K       K       + +
Sbjct: 442 ADDLAFERIFNTPKRGLGDATLQTLHAFARADRIPLLAAAGKLIETDELKPRARSMLRGL 501

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           ++     + +       +    IL      + +      +    L+    F    E+   
Sbjct: 502 VESFSRWVRLVGTKPHPEVAQTILEESGYTEMWQKDRSADAAGRLENLKEFVRSMEE--- 558

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               ++ + LE     ++ + +   + V +MT+H AKGLE   VFL      +F ++   
Sbjct: 559 --FPDMAAFLEHVSLVMEASEAEGADRVSLMTLHAAKGLEFDTVFLPGWEDGLFPNQR-- 614

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                          I    ++  EE  RL +VG+TRA  +  +
Sbjct: 615 ------------------------------AIDESGRAGLEEERRLAHVGLTRARKRAKL 644

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               N       +       + +       V +     S     +            TP 
Sbjct: 645 SFAVNRRIHGLWSSTIPSRFIDELPPQAVDVIEAPAHFSAGASRFDRNPAPFGSSYGTPG 704

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
            +               +  S  +                   T   S   
Sbjct: 705 WQRAQANTSGGFGGGGSQGRSEGRGGGRSSGPREIEGELVAKSTGAPSAFE 755


>gi|161505570|ref|YP_001572682.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866917|gb|ABX23540.1| hypothetical protein SARI_03740 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 674

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 104/670 (15%), Positives = 216/670 (32%), Gaps = 121/670 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I+     L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIDDDKVVLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGSATLQKLGEWAMTRNKSLFTASFDMGLSQTLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEIQRLAEREPIAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E N   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELNEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 664

Query: 720 ENTPLEREET 729
                +R ++
Sbjct: 665 AMMAAKRAKS 674


>gi|325860059|ref|ZP_08173185.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
 gi|325482344|gb|EGC85351.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
          Length = 1111

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 134/883 (15%), Positives = 284/883 (32%), Gaps = 82/883 (9%)

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
                 ++ L +  + ++  IT  +++    L   L + +         F +  +    L+
Sbjct: 296  LESADNWLLKKCPSEKRATITALVSE---SLYNDLVQLETLRKSSWREFQSCNLTLRHLS 352

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILI 182
             L L   ++   +E  K         ++ NT  LL    K   + ++  K+   + HI+I
Sbjct: 353  QLRLLHAISEAVDEINKDTNRF----MLSNTQSLLSTLMKDSDTPFVFEKMGAYLKHIMI 408

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDTS IQW+  R L ++     ++H+       VGD KQSIY +   + K +   + 
Sbjct: 409  DEFQDTSTIQWKNFRKLLDNCMAQIDSHN-----LIVGDVKQSIYRWRQGDWKLLNNIEH 463

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                     G++  I  L  ++RS  +I+   +  FS          +S           
Sbjct: 464  EFS------GEQIKIQPLDTNYRSEENIIRFNNAFFSHAVKQTVEELESDGI-------G 510

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  + ++++                 ++    ++     +   +   +  ++     
Sbjct: 511  EANQLTEAYKEIAQHPKRNDGKGCVRIKLFYCGRNEKEYKEKVLEELTDNVRELLSHG-- 568

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                     + KDI +LVR +     I           ++++V ++ F L   LA+  ++
Sbjct: 569  --------YRQKDIAILVRSKGVIQAIADEFLHTF-GTEVTIVSDEAFRLDASLAVNVIV 619

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
               R +   ED L+   ++K             + T + +     E     A   +    
Sbjct: 620  HALRLLAHPEDKLTESKLVK-------LYQQQVLQTGKDDNTLFVEKGPYSARHLLPD-- 670

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLI-LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I     L+ ++      + ++L  L + +G+  ++             F +      +
Sbjct: 671  DYINRFELLLRMSLMDLVDEIYSLFSLDSLEGQSAYVCT-----------FYDTLNEYLR 719

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            +  + + + I E E+               +R++T+H +KGLE   V +     ++   K
Sbjct: 720  DHPADIDDFIEEWEENLSANTIQSDEVEG-IRLITIHKSKGLEYDNVLIPFCDWELEKKK 778

Query: 602  ----HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                     +      + P IP+   +      +  D  K        +   LLYV  TR
Sbjct: 779  GNTIWCPGENKEKPYGELPLIPVDFSKKNMMGTVFEDDYKAEHLQNTVDNMNLLYVAFTR 838

Query: 658  ASDQLIICKHSNTSNE-KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            A   L I     +    K+                       +L ++   D+      + 
Sbjct: 839  AGKNLFITGKRTSDKRFKELQNGGTASNRSQIIQLLLSELATELNSARLDDQGEKETLAF 898

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-SLLS 775
             +       +    K   +  ++   + +        P     S          +     
Sbjct: 899  EYGSLPDNVQSIKKKATANPFEVTPDMHTLKIETFPHPVSFRQSNKSHDFVRGEDLDPSE 958

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
             N+    G ++H+L   I  L E   +  +     +          K L   I   L+N 
Sbjct: 959  RNRYIKVGNVLHQLFSTI--LTEADIEPRLKELEQEGIIYNDEITSKELREKIADALKNE 1016

Query: 836  MMTTAMSCDSYSEVSVSGKINCP--KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
            M+    S     ++     I     +       R D++    + + + ++K         
Sbjct: 1017 MVKGWFSP--RWKLFNECTILEYNCESKEAQEHRPDRVMTDGKELIVVDFKFGKP----- 1069

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
                  +  Q+  Y K+L +      +   + YV   +V   P
Sbjct: 1070 ---REEYREQVQRYMKLLTNMGYQH-VSGYIWYVIRNEVIPTP 1108


>gi|170719947|ref|YP_001747635.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida W619]
 gi|169757950|gb|ACA71266.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida W619]
          Length = 1223

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 145/1047 (13%), Positives = 300/1047 (28%), Gaps = 153/1047 (14%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSME--TGNPTILKKAQTLQQASQTQCIEER 65
                  +   +      Y   +   ++     +                QA   +   ++
Sbjct: 213  EPQALIDAALQQRADQLYQLKAPWVQWAEQLQQICRDAVAAKLADGRKLQARFFEPWFDK 272

Query: 66   FSLLSSFFLTQK---FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
                ++   T +    T    +    + +     +     +      +  +        +
Sbjct: 273  LRAWAADEQTVELDLGTGFTRLTPAGMAEAWKAGEPPDHPALHAMQDLPQQLQALASPDA 332

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                   A +++A +E  K++   + F+D+++     L   +    +   I ++    LI
Sbjct: 333  -RLLEHAAAWVSARFEVEKRRRAEMGFDDMLLRLQHALA-SEAGERLAGLIREQFPVALI 390

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT  +Q+ +   +        + +     LF +GD KQ+IY+F GA+    L  +R
Sbjct: 391  DEFQDTDPVQYGIFERIYR-----ISENREETGLFMIGDPKQAIYAFRGADIYTYLSARR 445

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA------QGLSEDSTTTIR 296
                          +  L  ++RS+  ++  V++VF   E            E+    + 
Sbjct: 446  A---------TAGRLHSLDTNYRSSEAMVAAVNQVFLQAEARDQGRGAFLFRENDDNPLP 496

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISN 355
                R        L        D Q     + W    D  +        LA   A  I  
Sbjct: 497  FIEVRAKGRSERLLI-------DGQAIAALQCWQLESDEPVSSTLYRQQLAASCASHIVA 549

Query: 356  MIG------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            ++       +    ++G+ R     DI +LVR   +  L+      L +    SV  +D+
Sbjct: 550  LLNSAQRGLSGFSKADGELRPCLPSDIAILVRDGHEAQLVRS---ELASRDVRSVYLSDK 606

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +       DL+A  +     + +      L S     S  ++ ++           E 
Sbjct: 607  DSVFAAQEALDLLAWLKACAEPDSERLLKAALASLTLELSLAELDQLNQD--------ER 658

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            + +       +++   +    L  +            ++    G +   +         L
Sbjct: 659  VWEDWVMRFRRYRDTWQRQGVLPMLRHLLHDFQLPRRLIARSDGERVLTNLL------HL 712

Query: 530  DEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             E L      L  EQ     L E ++   Q          ++   V+++T+H +KGLE P
Sbjct: 713  AELLQQAAGELDGEQALIRHLAEHLANAGQAGEDQILRLESDEQLVKVVTIHKSKGLEYP 772

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V+L    +          +    S  +        P            I         E
Sbjct: 773  LVYLPFICTSKPVDGSRLPLAWHDSQGNAQLTLTPDP----------AQITLADDERLAE 822

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-------------------DMVYD 687
              RLLYV +TRA     +         +KS+Q                       D + +
Sbjct: 823  DLRLLYVALTRAQHACWLGVADLKRGNQKSSQLHRSALGYLLGGGVQLQGSAQLTDWLQN 882

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                   +    L  +  +     +      P   P         +     +     +  
Sbjct: 883  LLAGCPHIACPGLPEADEERYRSPHAERELLPARKPRRTAAEHWWIASYSALRVGEQTLG 942

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR----GLIIHKLLQVI---FTLPEHK 800
             +      +L+    D +    + +   D   F R    G  +H LL+            
Sbjct: 943  ADSSQAQQLLDDEGGDAQLPREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFAEVAA 1002

Query: 801  RKNFITSYCTKN-AKLWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSV 851
                I     +   +         L   + +LL  P+        +          E   
Sbjct: 1003 NPKLIERTVGQRCNRRDWTGWIPTLSQWLQQLLNEPLPARDMSLTLAQLQHYQIEMEFWF 1062

Query: 852  -SGKINCPKKDIII----------------------SGRIDQISISQQNIFIFEYKTHHH 888
             S +++  + D ++                       G ID         F+ +YK++  
Sbjct: 1063 ASHQVDAEQLDRLVARHTHPGAARPAAQPTLLNGMFKGFIDLAFELDGRYFVADYKSNWL 1122

Query: 889  VPQ---------EIEHIPYTHIAQLSIYEKILKDSYP--------NKSLVCLL-IYVSE- 929
             P          E   + + +  Q  +Y   L             ++ +   L I++   
Sbjct: 1123 GPDIQAYDTLAMEKAILEHRYDLQYVLYLLALHRQLRARLPEYDYDRHVGGALFIFLRAA 1182

Query: 930  -----PKVFIIPQNKLNKAFAEISTKI 951
                    F+ P  +L +A   +   +
Sbjct: 1183 SSSGHGVYFVKPPRELIEALDALFRGV 1209


>gi|114049137|ref|YP_739687.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-7]
 gi|113890579|gb|ABI44630.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-7]
          Length = 671

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 103/648 (15%), Positives = 209/648 (32%), Gaps = 123/648 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K +  +E+ +    LK       +    +       K+ K       L   L   Y +  
Sbjct: 118 KELTQKELQEDKDLLKALAGAISNWKGGLIIPDQARKLAKDEQQ--QLFAMLYQRYAQHM 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    LDF+DLI+    LL+  +    +R +   +I ++L+DE QDT+  Q+E+++ L  
Sbjct: 176 KAYNALDFDDLILLPTLLLRHHEE---VRTRWQTKIQYLLVDEYQDTNTSQYEMVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA+P+ ++   +              +I+L 
Sbjct: 233 E----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPT--------LKLIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +    S  S           G+   V             
Sbjct: 275 QNYRSSQRILRAANILIANNPHVYDKSLFSE-------LAYGEPMRVLF----------- 316

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                             ++    A R+   I           +      Q  D  +L R
Sbjct: 317 -----------------AANEEQEAERVVAEIIR---------HKFVGRTQFGDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+           +I    +          IKD+M   + +++ +DD +F+ ++
Sbjct: 351 GNHQSRLLERAL----MTNRIPYKLSGGTSFFARAEIKDIMGYLKLVVNPDDDNAFLRVV 406

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHI 494
             P        + ++      +  +++E I              S      ++I +    
Sbjct: 407 NLPKRGIGPSTLERLGNFSNEKHISMFEAIFDPELNHHLPPNAMSALYQFGRFIVDTGEH 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLRN----EQNSYS 545
           A+   P +    ++               ++     +  + E   +        E     
Sbjct: 467 AERGEPVEAVKQLIRKINYEDYLYETSTSAKAAEMRMKNISELYRWVTEMLSGDELEEPM 526

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L E+++ L       + +     ++V++MT+H +KGLE P VF+V    ++  H+    
Sbjct: 527 TLPEVVNRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPFVFMVGVEERILPHQTSID 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              +   +E  RL YVG+TRA  +L   
Sbjct: 587 -----------------------------------EDNVDEERRLAYVGITRAQRELWFT 611

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                  +     R            D+ + + +      ++      
Sbjct: 612 -LCRERRQFGETMRCEPSRFLHELPQDDLIWENRKPQQTEQERMQTGR 658


>gi|305679610|ref|ZP_07402420.1| phage prohead protease, HK97 family [Corynebacterium matruchotii ATCC
            14266]
 gi|305660230|gb|EFM49727.1| phage prohead protease, HK97 family [Corynebacterium matruchotii ATCC
            14266]
          Length = 1095

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 143/993 (14%), Positives = 282/993 (28%), Gaps = 195/993 (19%)

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                LT       +++ +   K    L  +L +      + R + N   +         +
Sbjct: 172  VDTLLTLTAELDNHMVDERELKIESLLFAQLCEELPPAKRQRKKPNQKILGWQETQFHRI 231

Query: 130  -AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
                L    ++  K   ++ F + +     L  +      +   +      +++DE QDT
Sbjct: 232  ELLPLVTKLKDRLKDENLVTFGEQMSLAARLAVENPSVGKV---LRNRYKVVMLDEYQDT 288

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S  Q  ++RSL                + AVGD  QSIY + GA    + R        A
Sbjct: 289  SHAQRMLLRSLFA-----------GGAVTAVGDPMQSIYGWRGATAANLNRFVTDF---A 334

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
             +  +     EL +SFR+  ++L + + V +    A          +    S +     +
Sbjct: 335  IDPQEPAVKNELTISFRNPPEVLHLANAVATTVLGAPSDPNRPVQPLSSPPSAVAGDIQL 394

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
              +  +  + +                             +A T++ +            
Sbjct: 395  GYFPTIADERE----------------------------FVADTLAELYNNRDT------ 420

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
               +     VLVR+   T  I    +       I         L D   + D++A+   +
Sbjct: 421  --AKPFTAAVLVRQNAHTGPIAKEFQ----RRGIPYEIVGINGLLDVPEVADMVAVATML 474

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------------------------- 462
            +   D  + + +L  P       DI  +  +  E                          
Sbjct: 475  IRPTDSAAALRILGGPAVGLGVRDIQALARRAGELSGRATSGKATDSVDPAVKLGEEIAE 534

Query: 463  --------------TETVYEYIQKFANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLI 507
                                  +K++  G  +   +   +  L   +A   S  D F  I
Sbjct: 535  VLAADAENIVGLTDAIADLGEPEKYSEEGYRRLGRLSSQLRRLRQTVAAGSSLPDLFAEI 594

Query: 508  LGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
                  R + +SR      G      LD+             ++L +L+    +      
Sbjct: 595  ERVMGIRTEVLSRENPRLDGAVGTIHLDKLHQEVANFATIPNTTLSQLLDYFTEARCQES 654

Query: 563  R----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP-------- 610
                      ++ V+I+TVH AKGLE   V ++   ++ +           P        
Sbjct: 655  GLELGEVQVRNDRVQILTVHKAKGLEWNTVCVLHANNRDYDKTRASTWLTNPAMVPSTLR 714

Query: 611  ----SLNDDPGIPI----WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                   D  G P+    W+          +  I+  ++S  EE  RL YV +TRA+ +L
Sbjct: 715  GDAAESGDTVGSPVLDTSWLENRAQLEAECAAHIEEFRQSLSEESTRLFYVAVTRAAQRL 774

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            I+   +   NE+ +   + + ++  +   D  V       +   D           P   
Sbjct: 775  IVTASALDDNERDTEPCSNFLLIKRNASTDSIVAWHDPAEAAATDTSDEPSEVQQSPTGM 834

Query: 723  PLEREETI------------------------------------------KQLMDEQKIP 740
              +  +T+                                          ++    Q   
Sbjct: 835  FPKPTKTVDLLTGADLVRKAIAQQSVGDPIAFNQDNDLFQLWEKDVTALIEEYQRLQSDI 894

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
             ++    +    +   L  +      +         N+   RG   H  L+  F  P   
Sbjct: 895  VEVELSPELTATDIVALKQNPEQFARRQRRPVPFKPNRYAKRGTEFHSWLEQRFGAPT-- 952

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSI----TRLLENPMMTTAMSCDSYSEVSVSGKIN 856
                          L    E   +   I     + L++  +    +    + + V     
Sbjct: 953  --------------LLDESELPGMDEEITPGQLQELKDKFVAGQFAD--RTPMFVEQPFE 996

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI-AQLSIYEKILKDSY 915
                 I+I GR+D +   +    I ++KT     +        ++  QL++Y        
Sbjct: 997  VSIDGIVIRGRMDAVFRDESGWHIVDWKTGQLPSRADM----RYLMMQLAVYRIAWAQLQ 1052

Query: 916  PNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAE 946
                  +     YV   K+         +  AE
Sbjct: 1053 GIDPDEIHASFYYVRYDKLSSADNLPSEREIAE 1085


>gi|17548006|ref|NP_521408.1| ATP-dependent DNA helicase REP protein [Ralstonia solanacearum
           GMI1000]
 gi|17430312|emb|CAD17077.1| probable atp-dependent dna helicase rep protein [Ralstonia
           solanacearum GMI1000]
          Length = 705

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 103/606 (16%), Positives = 187/606 (30%), Gaps = 130/606 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R K    + + L+DE QDT+
Sbjct: 178 AALVYRNYVATLHAYQAVDFDDLIRIPAELFARNED---VRLKWQNRLRYFLVDEYQDTN 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L         +H       AVGD+ Q+IY + GA    +   +        
Sbjct: 235 ACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNLKLLQTDFP---- 284

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +        +  S                  
Sbjct: 285 ----SLKVIKLEQNYRSTVRILNAANAVIAQNPKLFEKTLWS------------------ 322

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 323 -----------------EHGMGDAINVSGANDEEHEAESVVFK---------LSAHKFER 356

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      L   + R      +I  V +      D   IKDL A  R I 
Sbjct: 357 RAQFRDYAILYRGNFQARLFEQILR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 412

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E         K A   +   +
Sbjct: 413 NADDDPAFIRAVTTPKRGVGNATLEVLGAFAGQAKVSLFEAAMMGGIEAKLAPRQLEPLR 472

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLR 538
              ++I  L   A           ++G              R        + EFL++  R
Sbjct: 473 VFCEFIVRLSDRAAREPASTLLDEMMGGIHYEAYLYDTYDERQAQNKWTNVLEFLDWLKR 532

Query: 539 ---------------NEQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                           +          +L EL   +        +    + + VR+ T+H
Sbjct: 533 KGTKPENLEAEEATGYDNADGLMDTGKNLLELTQTIALISMLEGK--EEDPDAVRLSTLH 590

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H                                      
Sbjct: 591 ASKGLEYPHVFLVGVEEGILPHCREDDDLT------------------------------ 620

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 EE  RL+YVG+TRA   L I         +++        + +    D+     
Sbjct: 621 --DEKIEEERRLMYVGITRAQRSLHITWCKRRKRARETVVCEPSRFIAEMKLGDDAGPTP 678

Query: 699 KLTNSI 704
           + T   
Sbjct: 679 EDTMPA 684


>gi|126666630|ref|ZP_01737608.1| ATP-dependent DNA helicase Rep [Marinobacter sp. ELB17]
 gi|126629018|gb|EAZ99637.1| ATP-dependent DNA helicase Rep [Marinobacter sp. ELB17]
          Length = 672

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 99/664 (14%), Positives = 218/664 (32%), Gaps = 134/664 (20%)

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                E+  +LL    LT   T        +   +   ++  +   ++      +  +  
Sbjct: 107 SIFDAEDAKALLQDLMLTHGST--------DAGDELNPVQMTISSWKNAMRPPAEALSKA 158

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              +           +  +Y E  K    +DF+DLI+    L ++      +  K  ++I
Sbjct: 159 ADEREQR-----IAIIYGYYNEYLKAYNAVDFDDLILLPVMLFRQHPD---VLAKWQRKI 210

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            ++L+DE QDT++ Q+E+++ L                   VGD+ QSIY++ GA P+ +
Sbjct: 211 RYMLVDEYQDTNVCQYELVKLLVAGRAA----------FTVVGDDDQSIYAWRGARPENL 260

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            + ++              +++L  ++RST+ IL   + V +   +A      S   I  
Sbjct: 261 AQLEQDFP--------SLKVVKLEQNYRSTSRILRAANTVIANNPHAFEKVLWSDHAI-- 310

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                                      ++       +   +         R+A  I    
Sbjct: 311 --------------------------GEEIRIIRCRNEEAET-------ERVATEI---- 333

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                     K+ +  KD  VL R      L+    +     Y+I    +          
Sbjct: 334 -----LDQKLKQGLGFKDFAVLYRGNHQARLLEVKLQ----GYQIPYRISGGQSFFAKSE 384

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYI 470
           IKD MA  R +++  DD SF+ ++  P        + ++    R    +++         
Sbjct: 385 IKDAMAYLRLLINPTDDASFLRVVNVPRREIGPRTLEQLSHYARARNVSLFKALGDMGAQ 444

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEV 525
               + G+ + +    +            P      +    +  +      G        
Sbjct: 445 SHVTDKGLERLRRFAHWADATCKRLHSDDPVQVIKQLFTDIEYEEWLHQHSGSPKQAQWR 504

Query: 526 IDVLDEFLNFTLRNEQN-----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
           ++ +   ++   R   +         +++ I++L       +R    + ++V+++T+H +
Sbjct: 505 MENIWYLVDSIQRMLDDGKGTADEIGVEDAITKLILRDMMEQREEEDDSDKVQLLTLHAS 564

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE P VF++    ++  H+   +   +                               
Sbjct: 565 KGLEFPHVFIIGLEEEILPHRMSIEEENIEEE---------------------------- 596

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
                   RL+YVG+TRA + L +   ++     +  +      + +   +D R   +  
Sbjct: 597 -------RRLMYVGITRARETLTLTYAASRRQYGEKMETIPSRFLDELPEDDVRWLGLGE 649

Query: 701 TNSI 704
            +  
Sbjct: 650 ADVE 653


>gi|20384889|gb|AAL79572.1| exonuclease V beta subunit RecB [Pseudomonas syringae]
          Length = 1227

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 140/979 (14%), Positives = 275/979 (28%), Gaps = 135/979 (13%)

Query: 21   WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
            W     Q+ +I      +       +   A+  +   +          L    L   FT 
Sbjct: 239  WLQWAQQLREICLQAVAAKAVDGRKMQ--ARYFEPWFEKLSAWAADESLEQLDLGTGFTR 296

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
                   E  K  P     L           D   T             A +++  +EE 
Sbjct: 297  LTPDGFAEAWKGEPPQHPALDAMHG-LKAALDALPTPDAA----VLEHAAYWVSKRFEEE 351

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            K++   + F+D+++  +  L+  D    +   I ++    LIDE QDT  +Q+ +  ++ 
Sbjct: 352  KRRRAEMGFDDMLLRLDAALQA-DGGERLATLIREQFPVALIDEFQDTDPVQYRIFETIY 410

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                     +S    LF +GD KQ+IY+F GA+    LR +               +  L
Sbjct: 411  R-----IEDNSPDTGLFLIGDPKQAIYAFRGADIYTYLRAR---------HATSGRLHTL 456

Query: 261  PLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
              +FRS+  ++  V+ VF+  E  +                  +   G  ++ +      
Sbjct: 457  DTNFRSSHVMVEAVNHVFARAEQRDRGAFLFREGPENPVPFVSVKSQGRKEVLQL----- 511

Query: 319  DSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIGTDTIFSNGKK------RVI 371
            D Q       W    +  L        LA   A  I  ++        G        R +
Sbjct: 512  DGQPATALTLWQLPSEQPLSGVIYRQQLAAACASQIVELLNGGQQGRCGFAQAGKALRGV 571

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               DI +LVR  K+      + R L      SV  +D+  +       D++A  +     
Sbjct: 572  LPADIAILVRDGKEA---QAVRRELSTRGVRSVYLSDKDSVYAAQEAHDVLAWLKACAEP 628

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            + +      L     +    ++ ++           E   +        ++ + +    L
Sbjct: 629  DVERPLRAALACITLDLPLIELERLNQD--------ELAWESRVMQFRGYREIWRKQGVL 680

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
              + +          ++    G +   +         L E L           + ++ L 
Sbjct: 681  AMLRRLLHDFQLPQALIARVDGERILTNVL------HLSELLQQAATELDGEQALIRHLA 734

Query: 552  SELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              L               ++   V+++T+H +KGLE P+VFL    S          +H 
Sbjct: 735  EHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFICSTKPVDGSRLPLHY 794

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                 +                   +LI         E  RLLYV +TRA     +    
Sbjct: 795  HDDAGNPRVSL----------KATPELITQADDERLAEDLRLLYVALTRAQHACWLGVAD 844

Query: 669  NTSNEKKSN-------------------QRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
                    +                          + D   +   ++ + +  +     +
Sbjct: 845  LKRGNNNRSVLHLSALGYLLGGGALLAESAGLQGWLTDLQQDCAAIRYLPVPTASEAKFY 904

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                 +T      P  R      +     +                    S  +      
Sbjct: 905  PPLNQATLLKPLLPARRAAENWWIASYSALRIGDSLSPAEAPESALAQKLSDDERLDPDA 964

Query: 770  LESLL-------SDNQTFNRGLIIHKLLQVI----FTLPEHKRKNFITSYCTKNAKLWPA 818
               +L          +  N G  +H LL+      F       ++ +   C +       
Sbjct: 965  PREVLLSGGDIHRFPRGPNPGTFLHGLLEWAGGEGFKADPQAIQDAVARRCNRRGWQGWI 1024

Query: 819  KEYKNLLLSITR---LLENPMMTTAMSC--DSYSEVSV---SGKINCPKKDIIIS----- 865
            +   + L  +      L N      +S       E+     S K++  + D ++      
Sbjct: 1025 ETLSDWLQHLQDEPLRLNNGQPAVVLSELSQYQIEMEFWFASHKVDVLQLDRLVRQHTHG 1084

Query: 866  -----------------GRIDQISISQQNIFIFEYKTHHHVPQEIEH---------IPYT 899
                             G ID     Q   ++ +YK++     +  +         +   
Sbjct: 1085 GAARAAAEPSLLNGMFKGFIDLTFEHQGRYYVADYKSNWLGADDSAYTEQAMTASILDNR 1144

Query: 900  HIAQLSIYEKILKDSYPNK 918
            +  Q  +Y   L      +
Sbjct: 1145 YDLQYVLYLLALHRQLKAR 1163


>gi|254776585|ref|ZP_05218101.1| hypothetical protein MaviaA2_18221 [Mycobacterium avium subsp. avium
            ATCC 25291]
          Length = 1139

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 137/954 (14%), Positives = 269/954 (28%), Gaps = 165/954 (17%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  +         +    +   L L+           L    +E  +   V+DF    
Sbjct: 239  ELERLVHALPAGPYQRDRGPSQWLLRLSGTQSERAELVPLLEALDERMRAVKVMDFG--- 295

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            +      +       +   +      +L+DE QDT   Q   + +L              
Sbjct: 296  MQMASAARLAAAFPQVGADLRGRYRVVLLDEYQDTGHAQRIALSALFG------GGVDDG 349

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R      +   + G    ++EL  S+R+    L V
Sbjct: 350  LALTAVGDPIQSIYGWRGASATNLPRFTTDFPR---SDGTPAPVLELRTSWRNPPRTLRV 406

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + + +           S      R       GTV+         +              
Sbjct: 407  ANAISAEARRR------SVAVHALRPRPDAPPGTVRCALLPDVVAER------------- 447

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                         + IA  I                 +      VLVR+  D   I    
Sbjct: 448  -------------QWIADHIDAHYRRARAD------GVSPPTAAVLVRRNADAAPIADAL 488

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I V       L     + +L+A+ R +       + + +L  P +     D+
Sbjct: 489  RA----RGIPVEVVGLAGLLSVPEVAELVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 544

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ----------------- 496
              +  +                  I+          + + +A                  
Sbjct: 545  AALWQRARALGGAGAAGGPATAEAIASAADPRNVEADAVCLADAIADPGPAEGYSAAGYA 604

Query: 497  ----------------FCSPHDFFTLILGAKKG--RQQFISRFGNEVIDVLDEFLNFTLR 538
                                 D    +          +  +  G    + LD F +    
Sbjct: 605  RIAALAAELSALRAHLDQPLGDLVAEVRRVVGLDCEVRAAAAAGWAGTEHLDAFADVVAG 664

Query: 539  N---------EQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLES 585
                      + ++ +S+  L++ L+              +   + V+++TVH+AKGLE 
Sbjct: 665  YAERADTGGTDASASASVAGLLAFLDVAESVENGLPAAPLAVARDRVQVLTVHSAKGLEW 724

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ----------------SKSRN 629
             +V +      VF     K   +  +    P +     +                 K  +
Sbjct: 725  QLVAVARLSGGVFPSTTAKTTWLTDAAELPPLLRGDRARPGALGIPVLDTSDVTNRKQLS 784

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------- 680
            + +S+  + L++   +E  RLLYV +TRA D L++  H   +   K    +         
Sbjct: 785  DKISEHRRQLEQRRVDEERRLLYVAVTRAEDTLLVSGHHWAATGIKPRGPSDFLCEIKDV 844

Query: 681  ---------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE---NTPLEREE 728
                         V          ++  L +++ +  W A   ++   E      L R+ 
Sbjct: 845  IDASAAAGDPCGTVEQWASAPADGERNPLRDNVVEAVWPADPLASRRGEVERGAALVRQA 904

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILN---PSTIDTKGKTNLESLLSDNQTFNRGLI 785
               +  D     +   + +   + E   +    P  +  +   +    L+ +       +
Sbjct: 905  MAAEPGDPGADVEGWAADVDALLAERARVTGPPPQVLPGQLSVSSLVGLARDPAGAAQRL 964

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSC- 843
             H+L       P     N   ++  K        E  +L  +    + +   +    +  
Sbjct: 965  RHRLPSR--PEPHALLGNAFHAWVQKFYGAECLFELGDLPGAADSDVGDTAELAELQAAF 1022

Query: 844  -----DSYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIP 897
                  + + V+V      P  D ++ GRID +   S     + ++KT    P   E + 
Sbjct: 1023 LESPWAARTPVAVEVPFEMPIGDTLVRGRIDAVFAESDGGATVVDWKTGA-PPDSPEAMR 1081

Query: 898  YTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                 QL++Y          P  S+     YV      +      +   A +  
Sbjct: 1082 QA-AVQLAVYRLAWAALAKVPESSVRTAFHYVRARTTVVPEALPTSDELAGLLA 1134


>gi|213961804|ref|ZP_03390070.1| UvrD/REP family helicase [Capnocytophaga sputigena Capno]
 gi|213955593|gb|EEB66909.1| UvrD/REP family helicase [Capnocytophaga sputigena Capno]
          Length = 1060

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 117/786 (14%), Positives = 240/786 (30%), Gaps = 111/786 (14%)

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            L  + V  +I  +I ++  H  IDE QDTS++QW+    L  +    +       ++  V
Sbjct: 371  LSNQPV-PFIYERIGEKFRHYFIDEFQDTSVLQWQNFIPLILNAVQSEVNKQRG-SVLLV 428

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD KQSIY + G + +   +   +          K  + +L  +FRS   I+   +  F+
Sbjct: 429  GDAKQSIYRWRGGKAE---QFMSLYNNEINPFLIKGEVKDLNKNFRSLEAIIDFNNLFFN 485

Query: 280  ------IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
                    E  + L +++                      + ++ +     +  +  +  
Sbjct: 486  FAADLFQSETYKNLYKNAAQEYPKNKKEQSLPKGYFNLSFITTEEEDMFTEENNNSNAVI 545

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
             S  + S    +  +I               +  +     KDI +LVR  ++   +    
Sbjct: 546  LSPRERSYCEAILEKI--------------EHANRAGAADKDITILVRTNREGAAVASFL 591

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
               + +    V+  D  +L +  +++ L+ L R +   E +   + +L   L   S  D 
Sbjct: 592  SEHQRN----VISPDSLLLKNVASVQFLVTLLRLLYHPESEELKLQLLFDYLRFKSTKDP 647

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
                                +          +      I +    S ++   L +     
Sbjct: 648  ----------------HLFLSKYVEEPVNTFLADFQFSIELFNQYSLYEAVALAVN---- 687

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                           L  F++     +      L + +   +     +  +     N + 
Sbjct: 688  ----CFDLARPSDAYLTHFMDIVFDFKNARKGGLADFLEFWDDQQEKLSISSPEGLNAIT 743

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK---SRNN 630
            +MTVH +KGL +PV+      S++      K    +     +    + +  +K   + + 
Sbjct: 744  VMTVHKSKGLSAPVIIYAFADSKLIDTHTEKLWFPVDHEQFNGFDYLLVNSNKSLVNYDP 803

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                L+  L +    +   +LYV MTR    L +       +                  
Sbjct: 804  QAELLMTQLHEQNLLDQLNVLYVAMTRPESFLYVITSLPKGSAGT--------------- 848

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                   +        ++W               E++E            K    P    
Sbjct: 849  ----YGTLFKEFLEKNEQWNENVVEYTFGNPVFPEKKEKAAAEESPIPFQKGWQQP---- 900

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                              +L       +   RG +IH+L   I           +     
Sbjct: 901  ----------NYKIATGASLLWDTHQQEALERGNLIHELFSKITY--ATDLDTVLNDAL- 947

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
                   A++Y+ L   + RLL +  +    S D   E  +  +      +     R D+
Sbjct: 948  -QEGTLTAEQYELLQPQMARLLRDSTLAPFFSEDY--EYFMEREFIDANGNYF---RPDR 1001

Query: 871  ISISQQ--NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYV 927
            ++ +     ++I +YKT H   Q        +  QL  Y++ L        +    L+Y+
Sbjct: 1002 LAYNPTTREVYIIDYKTGHPNDQ--------YRTQLQHYQQNLTAI--GWQVKGKYLVYL 1051

Query: 928  SEPKVF 933
               +V 
Sbjct: 1052 DLGEVV 1057


>gi|154148234|ref|YP_001406664.1| ATP-dependent DNA helicase PcrA [Campylobacter hominis ATCC
           BAA-381]
 gi|153804243|gb|ABS51250.1| ATP-dependent DNA helicase PcrA [Campylobacter hominis ATCC
           BAA-381]
          Length = 686

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 204/617 (33%), Gaps = 119/617 (19%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           +             +   Y + + +N ++DF+DL++ + ++L   D    I  +     N
Sbjct: 161 VANRARDFYQKISLIYKKYCDYEVENNLVDFDDLLVLSYEILDNFDE---IANETSSRFN 217

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            I +DE QDT+ IQ          F + K        L  VGD+ QSIY + GA  + +L
Sbjct: 218 FITVDEYQDTNEIQ----------FKLLKKLCKLHENLVVVGDDDQSIYGWRGARIENIL 267

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             K   +           +I+L  ++RST +IL   +++     N  G +  ST      
Sbjct: 268 NFKDEFKN--------VKLIKLEENYRSTPEILKAANELIGHNRNRLGKNLKSTV----- 314

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                + G                            ++ + +     A +IA  I  ++ 
Sbjct: 315 -----KPGE-------------------------SITIMESNDEIYEANKIADKIKTLLQ 344

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
           +           I+A++I VL R    +  I        N   I           +   I
Sbjct: 345 SG----------IKAENIAVLYRINALSRSIEEGL----NRANIPYKMVGGMKFYERAEI 390

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG 477
           KD++A  R +++Q+DD S   ++  P     +  +  +         ++++ I K +   
Sbjct: 391 KDIIAYLRLLITQDDDFSLRRIINRPKRGIGKVSLANLESFAYKNRLSLFDSIGKISTNI 450

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLI--LGAKKGRQQFISRF--GNEVIDVLDEFL 533
            +K   V + + EL +     S  +    +  L      +++ +    G + +  +DEF 
Sbjct: 451 ATK--KVCEALEELYNGILKLSNMNTTEKLENLEKTFKIKEYYAALPDGADKVANIDEFY 508

Query: 534 NFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                N +N     L E ++E+          +      + +M++H +KGLE   +F++ 
Sbjct: 509 ATLKDNAKNDPEFDLNEFLNEITLLSEADAITNE----AISVMSIHASKGLEFDHLFVIG 564

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                F                                              EE  RL Y
Sbjct: 565 LEEGFFP-------------------------------------LLGDSCDIEEERRLAY 587

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V +TRA   L +    +     K  +      + ++      +   +       D     
Sbjct: 588 VAITRAKRSLALSYVESRFFRGKREKLEKSRFLSEAGLCGGSLVLEEKGEFKKGDLVKHK 647

Query: 713 EWSTHHPENTPLEREET 729
            +       T   R E 
Sbjct: 648 LFGIGRIIATAKVRNEQ 664


>gi|320154905|ref|YP_004187284.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus MO6-24/O]
 gi|326423797|ref|NP_760033.2| ATP-dependent DNA helicase Rep [Vibrio vulnificus CMCP6]
 gi|319930217|gb|ADV85081.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus MO6-24/O]
 gi|319999164|gb|AAO09560.2| ATP-dependent DNA helicase Rep [Vibrio vulnificus CMCP6]
          Length = 672

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 99/659 (15%), Positives = 216/659 (32%), Gaps = 123/659 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L++ +    +    +          +       L  +   
Sbjct: 112 DQLALLKELTEKQLDGDKDLLRQLMSTISNWKNDMLSPEQAVARAQGEQQ--QLFAFCFE 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    LDF+DLI+    LL+  D    +R      I ++L+DE QDT+  Q+E+
Sbjct: 170 MYQKQMKAYNALDFDDLILLPVLLLRGHDE---VRQYWQNRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           +R L  +             L  VGD+ QSIYS+ GA+P+ ++   +             
Sbjct: 227 VRLLVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGQDYPN--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    S  S                        
Sbjct: 269 RLIKLEQNYRSTSRILRAANILIANNPHVYEKSLFSEIP--------------------- 307

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                    + +   +  D           A R+   I          ++        +D
Sbjct: 308 ------DGEKLKVLLANNDE--------HEAERVTGEI---------IAHKFLNRTDYRD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIEKSL----MQNRVPYRLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++E   +               +    ++
Sbjct: 401 AFLRIVNTPKREIGPVTLEKLGSYANMRGKSLFEASFELGLEQHLTGRGLDNLRRFTHWL 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTL-----R 538
             +   A+     +    ++                +     +  + +  ++ +      
Sbjct: 461 VAIADQAERGDTVEAVRSLVRDIHYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 520

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           N      +L+E++  L       +     + + V++MT+H +KGLE P V+L+ T   + 
Sbjct: 521 NNDQEEKTLKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHASKGLEFPYVYLIGTEEGIL 580

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL+YVG+TRA
Sbjct: 581 PHQTSID-----------------------------------EDNVEEERRLMYVGITRA 605

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             +L            +  + +    + +   +D   ++ K   +  +          +
Sbjct: 606 QRELTFVMCKERRQYGELIKPSQSRFLDELPFDDVEWEQTKKPVTQEERMAKGQAHIAN 664


>gi|86158934|ref|YP_465719.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775445|gb|ABC82282.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1192

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 121/950 (12%), Positives = 262/950 (27%), Gaps = 83/950 (8%)

Query: 49   KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
              + + +A +     +    LS+  L +       +  + + K       + +++     
Sbjct: 238  LVEAVGRAREALRPGDLDGALSADALARLGGLADALRGKRVLKADGPALREAREALAAAW 297

Query: 109  KIRDRFNTYKMFKSTLA-SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            +  +      +     A    L +   A Y   K     +DF+D                
Sbjct: 298  EALEPLAAGVLAGPQQAELARLVEDAEARYAARKASARAVDFDD---LLLRARDLLRADP 354

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             +R ++   +  +L+DE QD + +Q EV   +                L AVGD KQSIY
Sbjct: 355  GVRAELRGRLRALLVDEYQDVNPVQQEVFELVAGPGGGPGPV------LVAVGDLKQSIY 408

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F GA+     R  R           +  ++ L  + RS   +L +V++V +        
Sbjct: 409  RFRGADVAVFARLIRRLDA------GEGRVLHLSENHRSAPAVLDLVNEVSARAFRPPPG 462

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
            +      +                       +                       ++++ 
Sbjct: 463  APPRDDELAFGEHDRLVPTRPDALRPACEVLEDGAEGNAAERREREAEAIAARIGALVSG 522

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
                 I               R  +  D+ +L R+           R       +     
Sbjct: 523  AAGAEIRE-------RDGVTARRPRFGDVAILFRRLTQIAPYERALRA----AGVPYRLA 571

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                      ++DL  L   +    D +++  +L+SP    S+  +  +           
Sbjct: 572  RGGGFYQAPEVRDLGELLAAVADPSDAVAWAALLRSPACAVSDGALLLLARAGLARLPWL 631

Query: 468  ---------------------------------EYIQKFANCGISKFQHVIKYIHELIHI 494
                                                +       ++   ++     L  +
Sbjct: 632  APGELAAEVDRVAAGADAAPAADSGPGASPLRDAAPRAIPADEWARLLRLLAAYRTLHAL 691

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRN--EQNSYSSLQELI 551
                   +     + A       ++    E     L++ L    R   +  + + L   +
Sbjct: 692  RDRVPVGELCARAVEALDLDAALLAGPDGERRAVNLEKALALAARFGEDGGTPAELAAHL 751

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                  PP    A     + V +++VH AKGLE PV F+ D G++  +      +     
Sbjct: 752  RAQAARPPREPEAELEAADAVALLSVHQAKGLEWPVAFVPDLGARARADLRRALLDREGR 811

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            L     +     ++      ++      ++S   E  RLLYV +TRA D L++    + +
Sbjct: 812  LCVA--LFDPAREAFVETAALASARADDRRSAAAESRRLLYVALTRARDLLVLSGEGSGA 869

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
               +           D        +      +  +        +                
Sbjct: 870  ETWRGLVEAGLAERPDLARRIPMAEVTAPGPAPAQLAPADGSPAAPLAPPPLAPPAPPSP 929

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
                  ++ +    P ++ +     +     + +G   +       +   RG + H +L 
Sbjct: 930  VRAAVTELAEYARCPRRHLLGRVLGI----PEPRGAPGVPPGDDPGRATARGTLAHAMLA 985

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPA-KEYKNLLLSITRLLENPMMTT--AMSCDSY-- 846
                      +    +         PA    + +LL + R  E+P        + D    
Sbjct: 986  ETDLGAPPLERRAQLAAAAARRGYDPASPGVRRILLEVARFAESPGGRELALAARDGRLS 1045

Query: 847  SEVSVSGKINCPKK--DIIISGRIDQISIS--QQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
             EV    ++        + + G +D +        + + +YK     P         +  
Sbjct: 1046 REVPFLLRLGPGDGAPPVYLVGALDALVQERRGGGLTVVDYKYATPRPG----AAERYRL 1101

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
            QL  Y      ++P   +   L ++       +      +         P
Sbjct: 1102 QLLAYVLAAARAHPGARVRARLQFLRGDH-RTVDVTPSARELERFEQDAP 1150


>gi|284006571|emb|CBA71832.1| ATP-dependent DNA helicase [Arsenophonus nasoniae]
          Length = 654

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 106/666 (15%), Positives = 223/666 (33%), Gaps = 127/666 (19%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           L+  +    A   +     F       L ++ T       +++ ++   L   +   + +
Sbjct: 71  LEIIKREYSALGLKANFSLFDEHDQMALLKELTFDLLEEDKDLLRQ---LASTISNWKSD 127

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            +         K  +               YE       VLDF+DLI     LL + +  
Sbjct: 128 LLTANQVMAQVKSEQQQR-----FAECYRRYELHLSSCNVLDFDDLITKPTRLLDENEE- 181

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             IR +  Q+I ++L+DE QDT+  Q+++++ L  +                VGD+ QSI
Sbjct: 182 --IRSRWQQKIRYLLVDEYQDTNTSQYQLVKLLVGN----------RGRFTVVGDDDQSI 229

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YS+ GA+P+ +   K    +          +I+L  ++RS+  IL   + + +   +   
Sbjct: 230 YSWRGAQPQNLALLKTDFPQ--------LKVIKLEQNYRSSGRILKAANILIANNPHVFD 281

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               S              G  +  + + + ++                          A
Sbjct: 282 KKLFSEL------------GYGEALKVITANNED-----------------------HEA 306

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            R+            + ++      Q K+  +L R    + L       L    +I    
Sbjct: 307 ERVI---------GELVAHHFVNKTQYKNYAILYRGNHQSRLFEK----LLLQNRIPYRI 353

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
           +          IKD++A  R + + +DD +F+ ++ +P        I K+        ++
Sbjct: 354 SGGTSFFSRAEIKDILAYLRILTNPDDDSAFLRIVNTPKREIGPKTIQKLGEWAILRQKS 413

Query: 466 VYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKGRQQ 516
           ++               G++  QH  +++ E+   A+        D    I       + 
Sbjct: 414 LFAASFDVGLEQTLTGRGLTALQHFTRWLAEIAERAEREPLLAVRDLLHDIDYESWLYET 473

Query: 517 FISRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             S    E  +  +++   +        + +   +L +++S         +     + ++
Sbjct: 474 SNSTKAAEIRMKNVNQLFGWMDEMINGNDIDEAMTLSQVVSRFTLRDMMERGETVEDLDQ 533

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H +KGLE P VFLV     +  H+                              
Sbjct: 534 VQLMTLHASKGLEFPYVFLVGMEEGLLPHQTSID-------------------------- 567

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                    ++  +E  RL YVG+TRA  +L            +  +      +++   +
Sbjct: 568 ---------ENNIDEERRLAYVGITRAQRELFFSHCRERRQYGELIRPEISRFLHELPQD 618

Query: 692 DERVKK 697
           D   ++
Sbjct: 619 DLIWEQ 624


>gi|163849774|ref|YP_001637817.1| UvrD/REP helicase [Methylobacterium extorquens PA1]
 gi|163661379|gb|ABY28746.1| UvrD/REP helicase [Methylobacterium extorquens PA1]
          Length = 795

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 99/606 (16%), Positives = 190/606 (31%), Gaps = 114/606 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+        +DF DL++    L ++      I         +IL+DE QDT++ 
Sbjct: 212 QLYAAYQARLATLNAVDFGDLLLLCLKLWRENPD---ILANYQDRFRYILVDEYQDTNVA 268

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          + + +  VGD+ QSIY + GAE   +LR +          
Sbjct: 269 QYLWLRLLAQ----------ARKNVACVGDDDQSIYGWRGAEVDNILRFEHDFP------ 312

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +++ L  ++RST  IL     + +  E   G +                       
Sbjct: 313 --GATVVRLERNYRSTGHILAAASGLIAKNEGRLGKTL---------------------- 348

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  + T  +DS  +       AR++A +I ++               
Sbjct: 349 ------RTEDEAGEPVTVTGSWDSEEE-------ARQVAESIESLQRRGHAL-------- 387

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VLVR       I            +           +   I+D +A  R  ++ 
Sbjct: 388 --SEIAVLVRISAQMREIEDRF----VQVGLPYRVIGGPRFYERAEIRDALAYLRVTMNG 441

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHV 484
            DDL+F  +  +P     +  +  +    R +   +    +K       K       + +
Sbjct: 442 ADDLAFERIFNTPKRGLGDATLQTLHAFARADRIPLLAAARKLIETDELKPRARSMLRGL 501

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           ++     + + +     +    IL      + +      +    L+    F    E+   
Sbjct: 502 VESFTRWVRLVETKPHPEVAQTILEESGYTEMWQKDRSADAAGRLENLKEFVRSMEE--- 558

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               ++ + LE     ++ + +   + V +MT+H AKGLE   VFL      +F ++   
Sbjct: 559 --FPDMAAFLEHVSLVMEASEAEGADRVSLMTLHAAKGLEFDTVFLPGWEDGLFPNQR-- 614

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                          I    ++  EE  RL +VG+TRA  +  +
Sbjct: 615 ------------------------------AIDESGRAGLEEERRLAHVGLTRARKRAKL 644

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               N       +       + +       V +     S     +            TP 
Sbjct: 645 SFAVNRRIHGLWSSTIPSRFIDELPPQAVDVVEAPAHFSAGASRFDRNPMPFGSSYGTPG 704

Query: 725 EREETI 730
            +    
Sbjct: 705 WQRAQA 710


>gi|126668208|ref|ZP_01739169.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17]
 gi|126627357|gb|EAZ97993.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17]
          Length = 1241

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 131/973 (13%), Positives = 281/973 (28%), Gaps = 132/973 (13%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
             +    W     +V+D+   ++ S      ++      +         E    L  +   
Sbjct: 246  TLKAHPWADWKPEVTDMLLALNKSKRLHGGSMKPM---ITAWDTLLDWENSDELYPAGLE 302

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
               F  Q   +     K   D+     ++ D   ++          ++         ++ 
Sbjct: 303  KAGFQNQTPEVLATKLKGDGDVPHH--QAFDVIAELIAFCENLPSAEA-DILRHSTHWIA 359

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
            A  E  K+K   + F+DL+   +D L        +   I ++    LIDE QDT  +Q+ 
Sbjct: 360  ARLESEKQKRSEMGFDDLLTRLDDALHGPR-GDQLAATIRRQFPVALIDEFQDTDPVQYR 418

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            +   +          +     L  +GD KQ+IY F GA+    L  +          G  
Sbjct: 419  IFDRIYR-----VAENHPDTCLLMIGDPKQAIYGFRGADIYTYLDART---------GAH 464

Query: 255  FSIIELPLSFRSTADILTVVDKVFS---IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 L  +FRS+  ++  V++VF       +                  +   GT +LW
Sbjct: 465  ERTWTLGRNFRSSRTMVAAVNRVFEYGDQHSSEGAFLFGKGDASALPFQAVEANGTKRLW 524

Query: 312  ----EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG- 366
                +   S        +    +     L + ++   +A   A  I+ ++        G 
Sbjct: 525  ATNGKLQPSLTLWASESENTDKSGNRKGLAKGNATLDVAGTCASEIARLLTLGQQSLAGF 584

Query: 367  -------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                       ++ KDI +LV  RK+   +      L      SV  +DR  +      K
Sbjct: 585  ALETDLSDIEPVEPKDIAILVNNRKEAAAVRD---ALGQRGIKSVYLSDRDSVLASPESK 641

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            +++   +              L +P        + ++ T     E   E    +     S
Sbjct: 642  EVLCWLKAFAEPRQLAYARAALATPTLGLPWAYLDQLLTNEMALEREIERFMGYQQQWQS 701

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
              Q V+  +   +         D    +L    G ++            + E L      
Sbjct: 702  --QGVLPMLRSFLMD------FDVPGRLLQRVGGERRLTDIL------HIAELLQQDSLQ 747

Query: 540  EQNSYSSLQELISELEQYPPTIKR---AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                ++ +    + L       +       ++   V+++T+H +KGLE P+VFL    + 
Sbjct: 748  LDGEHALVHHFTAILRAADDEDEHRTLRLESDAGLVKVITIHKSKGLEYPLVFLPFGTAY 807

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
               ++    +      +    +    P            ++   K    E  R LYV +T
Sbjct: 808  RAENEKQAFVRYHDHNDQLITVFDPTPN----------DVEQADKERLGEDIRKLYVALT 857

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA     +      + +                     ++++ + +S    E +      
Sbjct: 858  RARFATWVGVTEIENWQLSGLGYLLSGNPAAKHSLSGALQQLAVGHSELFVESLPEATGQ 917

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPSTIDTKGKTNLESLL 774
            H+ E  P       + + + ++                    +  S  +     NL    
Sbjct: 918  HYAEPAPGALGLARESIREAREDWWIASYSSLEYSGLSGTGIVFASEFEDAESQNLLEEG 977

Query: 775  S------------------DNQTFNRGLIIHKLLQ--------VIFTLPEHKRKNFITSY 808
            +                    +    G  +H +L+         +   P   R+      
Sbjct: 978  THTNDDEDAAILLSHSLHYFPKGAGPGTFLHDILEWCVQQGLQHLVDNPPLLREQLTRRC 1037

Query: 809  CTKNAKLWPAKEYKNLLLSITRLL------ENPMMTTAMSCDSYSEVSVSG--------- 853
             T+    W       +L  I + L      ++  + +  +     E              
Sbjct: 1038 STRGWSDWVDTLEHWILALIRQPLPLGDSGDSTSLASLKTLRPELEFWFESRNVSTRALD 1097

Query: 854  --------------KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE------- 892
                          +++  + + ++ G ID +       ++ +YK++     +       
Sbjct: 1098 KLVTQNTLNGADRPRVDGGRFNGMLKGFIDLVFEHNGQYYVLDYKSNVLGDNDSAYTNQA 1157

Query: 893  --IEHIPYTHIAQ 903
                 +   +  Q
Sbjct: 1158 MGEAILDKRYDLQ 1170


>gi|167034115|ref|YP_001669346.1| UvrD/REP helicase [Pseudomonas putida GB-1]
 gi|166860603|gb|ABY99010.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 1061

 Score =  250 bits (638), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 157/994 (15%), Positives = 301/994 (30%), Gaps = 142/994 (14%)

Query: 1    LKNRFGLS----LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
            +  R GL      ++     ++D       Q+   +  +  + +                
Sbjct: 133  ISRRLGLEVTLQQSDLPSDSWQDALRRLLDQLRSNDIDLERARDFAARNAQDLLAHFPSM 192

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR----- 111
            + +    E    L       +    K  +T        D + +L++    +         
Sbjct: 193  TSSDLDAELLRTLPDVLALLQDANSKVKLTATYITLLKDFQRELQQGNARWSDWAKLAKT 252

Query: 112  --------------DRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDF 149
                          +R   Y       A L         LA      Y   K +  VLDF
Sbjct: 253  APEAKLTPLVAGVTERVQRYAEHPRLHADLREYLDQIFNLAIDALQLYSRNKIELGVLDF 312

Query: 150  EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
             D       LL        +   ++QE++ +++DE QDTS +Q  +   L          
Sbjct: 313  ADQEHALLRLLDNP----AVIEVLEQELDLVMVDEFQDTSPMQLAIFLKLAR-------- 360

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                + ++ VGD KQ+IY F G++        +         G    +  LP S+RS  +
Sbjct: 361  --IAKRVYWVGDIKQAIYGFRGSD----CALMQAILGALPGMGGVKEV--LPKSWRSRPE 412

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            ++ + ++VF+   +   LS D       R   +G                          
Sbjct: 413  LVELTNEVFTQAFSN-SLSADEVRLTPTRQDPLGGP------------------------ 447

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG---KKRVIQAKDILVLVRKRKDT 386
             ++ + +   S+A      +A  I  ++ +     +    + R +QA DI VL     + 
Sbjct: 448  -AFANWILDGSNAEQQTCALAEGIGQLLESRYQVFDKTTQQARDLQAGDITVLCYSHSNV 506

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
              +            +         L         +A  R +    D L+   ++     
Sbjct: 507  AKVAAA----LAAAGLPCSTAQP-GLLATPEATLALACLRRLNDPTDTLATAQIVSMTSA 561

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
               E  + +     H      +   +           ++  +  L       +P +    
Sbjct: 562  EEPESWVAERLHYLHAGHP--QGQWREQTVDAHAAHPLVAELARLRADLPLLTPVEALQR 619

Query: 507  ILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRNEQN-----SYSSLQELISELEQ 556
            ++      +                  LD  L    R +         +S+  L+  L Q
Sbjct: 620  LIAECDLARCVTGWSTTPAQAQKRLANLDALLELAQRYQDLCRNGLGAASISGLVLWLGQ 679

Query: 557  YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                   A +    + VR+MT H +KGLE PVV L+D    V             +L+ +
Sbjct: 680  TAGAGNDALATPALDAVRVMTHHASKGLEWPVVILMDLARDVGERLWSVSAQSDSALDPN 739

Query: 616  PGIPIWIPQSKSRNNIVSD------------LIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
              +     +                        K  +    EE  RLLYV MTRA D L+
Sbjct: 740  DPLRDRFIRYWPWPLGKQKNVPLADTIGKTPAAKACRDEAVEEAKRLLYVSMTRARDFLV 799

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            I          +S++R     +          +       +     +  E  T    + P
Sbjct: 800  IA---------RSSRRLTGPWLDCVQAPWLTTEAGTHELQLKSGTTVRVEHRTLGAGSAP 850

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES---------LL 774
            +    T  QL           SP       P  + PS          +          L 
Sbjct: 851  VIATATTNQL-------HWFASPDSVTPRLPLGVQPSATQASALAGAQETCRIGSRITLQ 903

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
             +      G  IH  L + F+ PE        +   +   +    + + +L  +T L  +
Sbjct: 904  GNPDMSAVGTAIHASLGLSFSDPERPISQDEVNRLLQGLDVLEHVDARQVLAQVTAL--H 961

Query: 835  PMMT-TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
              +       D+ +E  V   ++      ++ GRID +  + +   + ++K++     + 
Sbjct: 962  AWIASRWPHADAVAEYPVQQLLDA---GQVLDGRIDLLLATPEGWVLIDHKSNPAPEAQW 1018

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            + +  TH  QL  Y K ++ +   K +    +++
Sbjct: 1019 QRLAATHAGQLQAYAKAVEAA-SGKPVTEAWLFL 1051


>gi|313106720|ref|ZP_07792937.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 39016]
 gi|310879439|gb|EFQ38033.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 39016]
          Length = 658

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 93/634 (14%), Positives = 206/634 (32%), Gaps = 125/634 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   +    +DF
Sbjct: 118 DDGVDEIKNYIGAWKNDLILPEEALEKARNPKE-----QTAAIVYLHYQRTLRAYNAVDF 172

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  K   ++ ++L+DE QDT+  Q+ +++ L +D       
Sbjct: 173 DDLILQPVKLFQEHPD---VLQKWQNKVRYMLVDEYQDTNASQYLLVKLLVKD------- 222

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                    VGD+ QSIY++ GA P+ +++ K               ++ L  ++RST+ 
Sbjct: 223 ---RAQFTVVGDDDQSIYAWRGARPENLMQLKEDFP--------SLKVVMLEQNYRSTSR 271

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + +   +       S           G    V                     
Sbjct: 272 ILKCANVLIANNPHVFEKQLWSEMG-------HGDPIRVIRCR----------------- 307

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                      +    A RIA  I  +           +      +  +L R      L+
Sbjct: 308 -----------NEDAEAERIAMEILTLH---------LRTERPYSEFAILYRGNHQAKLM 347

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     ++I    +          +KDLM+  R +++ +DD +F+ ++  P     
Sbjct: 348 ELKLQ----HHQIPYRLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVINVPRREIG 403

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    + Q   +++  +        P  
Sbjct: 404 SATLEKLGNYATQRKISMYAACDEMGLAEHLDSRFHERLQRFKRWMDGIRRQCAENEPIA 463

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              ++      +  +   +      L  ++    ++++ I++L
Sbjct: 464 VLRSMVMDIDYENWLRQNASSDKVAEFRMSNVWFLIEALKNTLERDEEGDMTIEQAIAKL 523

Query: 555 EQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                   ++        V++MT+H +KGLE P VF++    ++  H             
Sbjct: 524 VLRDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 570

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L +   +     
Sbjct: 571 ----------------------RSSIEADTVEEERRLAYVGITRARQNLAMTFAAKRKQY 608

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            +    +    + +    D   + ++      K 
Sbjct: 609 GEIIDCSPSRFLDELPPEDLEWEGMEDAPQEVKA 642


>gi|117619432|ref|YP_858409.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117560839|gb|ABK37787.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1205

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 126/880 (14%), Positives = 261/880 (29%), Gaps = 137/880 (15%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 D     +     L     A  + +  + +K++   L F+DL+ + +  L    + 
Sbjct: 312  LFSEIDALLASRPGIRDLILQRAAVVVRSRMQASKRQAHQLSFDDLLKDLDGAL-GSGLG 370

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +  +I       +IDE QDT   Q+ +   L            +   L  +GD KQ+I
Sbjct: 371  ERLCERIRATYRVAMIDEFQDTDPQQYRIFHRLYGG--------HTDTALLMIGDPKQAI 422

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F GA+    ++ +R      T          L  ++RS+  ++  V+ +F   ++   
Sbjct: 423  YGFRGADIFTYIQARRNVSAHYT----------LGRNWRSSRALVAAVNGLFERAKDPFI 472

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL-PQESSASIL 345
               D          +               Q D +  P    W         +    S +
Sbjct: 473  YEADIPFLPVEAQGKSKA-----------LQLDGEAAPVLHCWQLSGQPTFNKGDYQSRM 521

Query: 346  ARRIAYTISNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            AR  A  I  ++       +    + ++A DI VLVR   +  L+      L      SV
Sbjct: 522  ARATAVEIHRLLTLARAGKAQIGDQPVKAGDIAVLVRTGAEGKLVQQELARL---AIASV 578

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              ++R  +   +  ++++ +     +  ++ S    L + LF+     + ++ +     E
Sbjct: 579  YLSNRESVLAQVEAREILLILHACQNPGEERSLRAALATGLFDLDAKALDELASDERAWE 638

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            +  +   ++        + V+  +  L+H           + +L +  G ++  +     
Sbjct: 639  SAVQEFMEYRKIWHK--RGVLAMLRALLHRRN------LASSLLASPNGERRLTNFL--- 687

Query: 525  VIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L      L  E      L E  S  +           +    V+I+T+H +K
Sbjct: 688  ---HLGELLQQVSCELDGEYALLRWLGEAASRPDGQDAEQVLRLESERKLVQIVTIHKSK 744

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE P+VFL    S    H+         +        +         N   + +    +
Sbjct: 745  GLEYPLVFLPFICS----HRAADTPLFHEADGAGNRTVL-------DLNGAEESLAEADR 793

Query: 642  STQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
                E  RLLYV +TR      +      + N K       +  +       E      L
Sbjct: 794  ERLAEDLRLLYVALTRGVYATWLGLAPVRSGNGKSEKTDLHHTAIGYLLQKGEEGDAATL 853

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI--------PKKLFSPIK---- 748
              ++ +        +   P  T        +  + E ++             S       
Sbjct: 854  ATALTELTQALPGVAVGEPSLTRPAPMAAEEDQLGEPQVRHFTGTLERDWWISSYSGLAA 913

Query: 749  ----------------NDINEPYILNPSTIDTKG--KTNLESLLSDNQTFNRGLIIHKLL 790
                            +++        + + T    +    S+ +  +    G ++H L 
Sbjct: 914  QGHGHSKGVLANPGFDDEVVTEAAALAADLSTAQQEEAPQPSIFTFPKGARPGTLLHSLF 973

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAM 841
            + I                      +       L   +  +L+ P          +    
Sbjct: 974  ETIDFQSAGGEPLAEHIATLLAQDGFDESWAPVLQQQVEAVLDTPLETGFGEPVRLRDLA 1033

Query: 842  SCDSYSEVSVSG-------------------------KINCPKKDIIISGRIDQISISQQ 876
                  E+                              ++      ++ G ID +   Q 
Sbjct: 1034 PERKQVELEFFLPMGRVTAPALTALCQQHDPLSRGNKPLSFATVQGMLKGFIDLVFEWQG 1093

Query: 877  NIFIFEYKTHHHV--------PQEIEHIPY-THIAQLSIY 907
              ++ +YK++H          P   + +    +  Q  +Y
Sbjct: 1094 RWYLLDYKSNHLGMSPADYSLPALEQAMAEHRYDLQYQLY 1133


>gi|226939251|ref|YP_002794322.1| Rep [Laribacter hongkongensis HLHK9]
 gi|226714175|gb|ACO73313.1| Rep [Laribacter hongkongensis HLHK9]
          Length = 674

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 99/649 (15%), Positives = 201/649 (30%), Gaps = 117/649 (18%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           K+++++ Q +  + ++     +     S          +   Y++       +DF+DLI 
Sbjct: 129 KDEIRRVQGQISRWKNDLVAPESALTDSRNDFEQACARVYLSYQDTLLAYQAMDFDDLIR 188

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               L ++   +     +   ++ ++LIDE QDT+  Q+E+++ L+              
Sbjct: 189 LPVMLFRRDAEA---LARWQGKLRYLLIDEYQDTNTCQYELVKLLSG----------VRG 235

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ QSIY++ GA  + + + ++   +          +I+L  ++RSTA IL   
Sbjct: 236 MFTAVGDDDQSIYAWRGANVENLAQLRQDFPR--------LHVIKLEQNYRSTARILRAA 287

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + V +           S   +                             +        D
Sbjct: 288 NSVIANNPKLFEKQLWSEFGL----------------------------GEPIHVVQCKD 319

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
              +       A  +A           + ++  +   +  D  VL R      LI    R
Sbjct: 320 DASE-------AGMVATR---------LLAHKFENRTRFADYAVLYRGNHQARLIEEALR 363

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
             K    I    +      D   IKD++A  R +++ +DD +F+  + +P        + 
Sbjct: 364 EHK----IPYAISGGQSFFDRAEIKDVLAYLRLLVNPDDDPAFIRAVTTPKRGIGNVTLE 419

Query: 455 KI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           ++         +++   ++                    ++  +   A           +
Sbjct: 420 RLGSHAGERHVSLFAACREVGFAERVPAAQREGLAEFAGFVERMAWRAVREPAGALLQEM 479

Query: 508 LGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           L A +           R        + + + +  R  +    +L EL   +        R
Sbjct: 480 LAAIQYEHWLYDSEEPRPAETKWKNVQDLVAWITRKAEADGKNLIELAQTIALITLLEGR 539

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + VR+ T+H +KGLE P VFL+     +  H+                      
Sbjct: 540 EGEEEPDVVRLSTLHASKGLEYPHVFLIGCEEGILPHQ---------------------- 577

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                        + +     EE  RL+YVG+TRA   L I          +        
Sbjct: 578 -------------ESIDTGMVEEERRLMYVGITRAQRSLTISHCVKRKRAGEWVFADPSR 624

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
            + +   +D R             E      +          +     +
Sbjct: 625 FIAEIGEDDVRHHGKPGQAPQMTREEGKARLAGLKSMLAAKRQTPPADE 673


>gi|330443998|ref|YP_004376984.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58]
 gi|328807108|gb|AEB41281.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58]
          Length = 637

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 95/550 (17%), Positives = 175/550 (31%), Gaps = 117/550 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++  ++   LDF+DL+  T  L K     A  R +  +    +LIDE QDT+  Q
Sbjct: 166 IYKEYQKKLEETNALDFDDLLFLTVKLFKT---CAEARQEYQELWKALLIDEYQDTNHAQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + + + +++            R +FAVGD  QSIYS+ GA    +L  ++   +      
Sbjct: 223 YTMAQIISDQ----------HRNIFAVGDPDQSIYSWRGANIHNILNFEQDYPQ------ 266

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ L  ++RS  +IL   + +     +       S                     
Sbjct: 267 --AQVLRLEENYRSYGNILNAANALIQNNASRLKKELRSVR------------------- 305

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +   +    D           A  +A  I  +              I 
Sbjct: 306 --------GPGEKIRLFLGKTDREE--------ADFVAEEILKIHRKSQ---------IA 340

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            ++  +  R    +              +I               I+D++A  R   ++ 
Sbjct: 341 LRNFCIFYRTNFQSRTFEDAL----LRRRIPYEILGGLSFYKRREIQDILAFLRMFSAKN 396

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ--------KFANCGISKFQH 483
           D ++F   L  P        I  +      E  ++ E  +        K +       + 
Sbjct: 397 DLIAFERTLNLPKRGLGPAAISSLNHYALTEGLSLLEACKKTLKTQDVKLSKKQQEGLKD 456

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQ 541
            +    ++    +     +F   +L   +             +  + LDE ++ T   EQ
Sbjct: 457 YLSIFQQMEVAYETQPLSEFMISLLRITQYLNILKEDPDSFEDRKNNLDELISKTFEWEQ 516

Query: 542 NSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   SL+  + +L     T +    +  + V +MT+H  KGLE  + F+V     +F H
Sbjct: 517 QNPEGSLEAFLDDLALKSSTDEEDLIS--DRVNLMTLHNGKGLEFRIAFVVGLEENLFPH 574

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            + K  +                                     EE  RL YVG+TRA D
Sbjct: 575 ANSKGNY----------------------------------ENLEEERRLCYVGITRAQD 600

Query: 661 QLIICKHSNT 670
            L +      
Sbjct: 601 LLYLTAAQTR 610


>gi|150401936|ref|YP_001329230.1| UvrD/REP helicase [Methanococcus maripaludis C7]
 gi|150032966|gb|ABR65079.1| UvrD/REP helicase [Methanococcus maripaludis C7]
          Length = 945

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 129/890 (14%), Positives = 278/890 (31%), Gaps = 168/890 (18%)

Query: 81  QKNIITQEINKKSPDLKEKL----KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
           +K+    ++ KK     +K+        +E  +I  ++      +     L+    +  +
Sbjct: 205 KKDFTQSKMLKKFKSSGDKVYLDTPDDIEENKQISQKYIEESFNEDRADLLSFIHDIYFN 264

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y E       L+F+ L + +  +L           + +    +I++DE QDT+ +Q+ + 
Sbjct: 265 YIEKSVIENKLNFDFLTMFSYLMLYHDHKL-----RENNSFRYIMVDEFQDTNELQFILT 319

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L ++             L AVGD KQ IY F  A    +L  +    +       +F 
Sbjct: 320 LMLLKE-----------PNLCAVGDWKQGIYGFRNATIDNILNFEEKLNEYKNLLNDEFE 368

Query: 257 IIELP---------LSFRSTADILTV-VDKVFSIPENAQGLSEDST-TTIRHRSSRIGQV 305
            I+           ++FRS+  IL    + + +   +++ +  +     +   S+     
Sbjct: 369 RIKFDLNAENKEFVINFRSSQKILDFSNNALIAKGSSSEEIDSNEILKNVTKLSANFDMK 428

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              ++        +S+        +   ++               Y I +      +   
Sbjct: 429 EYSEIEFINSKDKESEIKSILSKISEIVNNEK-------------YKIVDYNDEKPV--- 472

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              R I+  DI VL R R                  I    +    L +      ++A  
Sbjct: 473 --FRPIEYSDIAVLSRTRN----FGLEIHKHAKKLGIPAKYDGGIELFNARESVLILAWL 526

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R + + +D  ++V +L                        + +           K+    
Sbjct: 527 RLLSNIDDKRAWVTIL-----------------AEDNYPYLEKRKIISEKEYPEKYIEFR 569

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           K + ++ +   F    + F              ++  +   + L             S  
Sbjct: 570 KNLQKIQNNVIFL-ISEIFKHYNIDNDYSNAITAQISSLCSNNL------------ISTK 616

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L   I E  Q   T +    ++ N + I TVH +KGLE PVVF+V+   + F  +  +K
Sbjct: 617 ILANFIEEAIQNNETFEIEIDSSPNSITIQTVHGSKGLEYPVVFIVNCNQKNFPSEMSEK 676

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIV----SDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             +  S      +          +++     +DL+K       +E  RL++V +TRA   
Sbjct: 677 GLLTHSDLYGARLSKIYGIKGEYHSLFNNWKADLLKAAVLREYDEERRLMFVAITRAKQY 736

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +    ++ ++  K+ ++                ++  +   S  +++             
Sbjct: 737 VYFTAYNPSNFFKELSRDFS------------ILEPSEFEFSKIENDVEIQ--------- 775

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
                                       +      +    I +       +     +   
Sbjct: 776 --------------------------NTEFELENYVKQGHIYSVHDFIDFTPSEGGRGIE 809

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            G  IH + +                   K       +        +   +++      +
Sbjct: 810 FGNYIHHVAEQFA--------------LKKEVFDDSKEVL-----EVKNFIDSLDAIELI 850

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
                    +   +       +I G ID +++    I I +YKT        E     + 
Sbjct: 851 PE-------IECSLPVNGN--LIRGIIDLLAMYDDKIEIIDYKTDVSKINHEE-----YR 896

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            QLSIY  ++K+ Y  K+ +C + YVS  +V  +     ++  + +S +I
Sbjct: 897 KQLSIYYYVVKE-YFKKNTLCKIYYVSLEEVVEVNPLGYDELVSLMSERI 945


>gi|296157515|ref|ZP_06840350.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295892287|gb|EFG72070.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 696

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 101/621 (16%), Positives = 197/621 (31%), Gaps = 130/621 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L +K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AAIVYRNYVATLHAYQAVDFDDLIRLPAELFEKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELVKLLAGKRAA----------FTAVGDDDQAIYGWRGATLENLGQLSKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   T+ 
Sbjct: 279 -----LHLIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDTIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  +L R      +   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 350 RANFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDICAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           +  DD +F+  + +P        +  + +   +   +++E +       + +   I   +
Sbjct: 406 NANDDPAFIRAITTPRRGVGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSPRQIEPMR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNF--- 535
               ++  L   A+  +       ++ A             R        + EF+ +   
Sbjct: 466 VFCDFMQRLTDRAEKDAAGTLLDELMDAIHYEAYLYDAFDERQAQSKWQNVLEFMEWLKR 525

Query: 536 ---------TLRNEQNSYSSLQELISE-------LEQYPPTIKRAH-SANHNEVRIMTVH 578
                       +E   Y +   L          ++             + + VR+ TVH
Sbjct: 526 KGTKAEPTGAAADEATGYDTADGLGDTGKSLLGLIQTVALMSMLEGREEDPDAVRLSTVH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+       +                             
Sbjct: 586 ASKGLEYPHVFLVGVEEGIMPHRGGPDDEPIDD--------------------------- 618

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
              +  EE  RL+YV +TRA   L +         +++        + +   +D      
Sbjct: 619 ---ARIEEERRLMYVAITRAQRSLHLNWCKKRKRARETVVCEPSRFIPEMLLDDAPPPTP 675

Query: 699 KLTNSINKDEWIAYEWSTHHP 719
           +      KD   + +     P
Sbjct: 676 EEAPMSPKDRLASLKALLQKP 696


>gi|189466027|ref|ZP_03014812.1| hypothetical protein BACINT_02391 [Bacteroides intestinalis DSM
            17393]
 gi|189434291|gb|EDV03276.1| hypothetical protein BACINT_02391 [Bacteroides intestinalis DSM
            17393]
          Length = 1073

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 143/877 (16%), Positives = 291/877 (33%), Gaps = 102/877 (11%)

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEK---LKKSQDEFIKIRDR----FNTYKMFKS 122
             +  L       KN  T+   +K+  ++     L     +    R R     N+ ++   
Sbjct: 276  VNATLKNSLDDAKNWATKTSAQKNEIIRLAETSLLPLLQDAETFRPRNNKIVNSCRLSLQ 335

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINH 179
             L  L L  +++    E  +++       L+ +TN LL    +   S+++  KI   I +
Sbjct: 336  HLNKLQLLAHIDEEVRELNREHNRF----LLSDTNALLHNLVRDGDSSFVFEKIGANIRN 391

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QDTS +QW+  + L  +                VGD KQSIY +   +   +  
Sbjct: 392  VMIDEFQDTSRMQWDNFKILLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNA 445

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                   +  +      +  L  + RS  +++   + +F+       +         H  
Sbjct: 446  L----GTKDASFPFPVRVETLKTNRRSETNVIRFNNNLFTAAVEYLNML--------HLK 493

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                    +Q     V+Q   +   +     ++ +   +     +    +   +  ++  
Sbjct: 494  ELQEDCYPLQRAYADVAQESPRTEAKGYIKATFLEPDEEHDYTELTIISLGEEVQRLLEA 553

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                       ++  DI +LVRK K+ P I            +SVV ++ F L    AI 
Sbjct: 554  G----------VKLNDITILVRKNKNIPPIADYF---DKTMHLSVVSDEAFRLDASQAIC 600

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSED--DIFKICTQRHETETVYEYIQKFANCG 477
             L+   R++ + ED ++   ++ +      +   D   + T R E               
Sbjct: 601  MLIDALRYLSNPEDKVACASLMMNYESGIKKQGGDWDSLLTARPEDVLP----------- 649

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                +  +  +  L         ++    +         F  +   E    L  F +   
Sbjct: 650  ----EAFVTGMETLR----LMPLYELLEELFSL------FEMKRIEEQDAYLFSFFDAVT 695

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
               QN+ S L   I    +     K   S   + +RI+++H +KGLE   V +     ++
Sbjct: 696  EYLQNNSSDLDAFIRYWNET-LCNKTIPSGEMDGIRILSIHKSKGLEFHTVLIPFCDWKL 754

Query: 598  FSHKHIKKMHIMPSL--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             +  + + +   P+        I      S    ++        +     +   LLYV  
Sbjct: 755  ENETNNQLIWCSPTEAPFSTLDIVPVNYSSTMAESVYRQNYLDERLQLWVDNLNLLYVAF 814

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA   LI                T  +++ ++       +  +  +     E      S
Sbjct: 815  TRAGKNLIFWCKKGQKG-------TMSELLANALPQVAAREGDENWDEEEPYESGELCPS 867

Query: 716  THHPEN--TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
             +   +   P  R+ +  +L  +          +++DI        S         +   
Sbjct: 868  KYTETDGHLPEARKVSANRLAQKPDKLPVHMESMRHDIE----FRQSNRSADFIQGVNEE 923

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
             SDN+  NRG ++H L   I T  E    N I     +     P  E +++         
Sbjct: 924  ESDNRFINRGRLLHTLFSAIET--EEDIDNAIDQLVFEGIIGKPETE-ESIRELTHHAFS 980

Query: 834  NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
             P +    S + +  +     I   ++  + + R D++ +    I + ++K         
Sbjct: 981  LPQVQDWYSGNWH--LFNECDIIWQERGELHTRRPDRVMMRGNEIVVIDFKFGKQN---- 1034

Query: 894  EHIPYTHIAQLSIYEKILKDS-YPNKSLVCLLIYVSE 929
                  +  Q+  Y ++L    Y  +++   L YV E
Sbjct: 1035 ----KKYNKQVQGYMQLLTRMGYLKENIKGYLWYVEE 1067


>gi|187735472|ref|YP_001877584.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425524|gb|ACD04803.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
          Length = 668

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 107/594 (18%), Positives = 197/594 (33%), Gaps = 120/594 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L   + A Y+   +    +DF+DL+I  + LLK+      +R    Q   +I +DE QDT
Sbjct: 163 LTANIAASYQRELQAQNSVDFDDLLILADKLLKEH---RDVREAWQQRFRYITVDEFQDT 219

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q  ++  L                +  VGD+ QSIY + GA+   +L  +R      
Sbjct: 220 NSLQMSLLGHLVG----------PEHNVCVVGDDDQSIYGWRGAQISNILEFERFFPN-- 267

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  S+I+L  ++R TA IL   + +       +  +  +           G    V
Sbjct: 268 ------PSVIKLEENYRCTAPILDTANALIRHNLGRRDKTLRA---------HKGGGEAV 312

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L        +                          A  I   I N+   +        
Sbjct: 313 RLISMPGDAEE--------------------------AEFIITDIENVRRQEGR------ 340

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                +D  +L R    + +I    R  K    I           D   +KDL++    I
Sbjct: 341 ---PWEDFAILFRANTQSRIIEQTLREHK----IPYRMVGAQSFFDRKEVKDLISYLATI 393

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDD-IFKICTQRHETETVYEYIQK------FANCGISKF 481
            + + D   + +L +P    SE      I   R    +V+  +Q        +    +  
Sbjct: 394 ENPQADEYLLRILNTPPRGISELTSHLVIDWSREHGNSVWAALQDEEFLAALSTRARNSV 453

Query: 482 QHVIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN----- 534
           Q   + I + I + Q       D    ++       ++++R      ++    ++     
Sbjct: 454 QAFNELIAKYIDLFQDKETDFGDILEQLIEETGF-SEYVTRLCKTEAEIQKRLVSIGDVK 512

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +LRN      +L++ ++++             N   V ++T+H AKGLE PVV+LV   
Sbjct: 513 ASLRNFWQPGKTLRDYLAQVTL-DKEDNDDDVENKPGVCLITMHAAKGLEFPVVYLVGLE 571

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +  HK                                      +    +E  RLLYVG
Sbjct: 572 EGILPHKRSL-----------------------------------EDGNCDEERRLLYVG 596

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           +TRA ++L++   +                + +   +     K +   +    E
Sbjct: 597 ITRAQEKLMLTYCATRLRYGDRMPCQRSSFLSEIPPHLMEYYKWEDLMNAEATE 650


>gi|317478934|ref|ZP_07938081.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
 gi|316904911|gb|EFV26718.1| UvrD/REP helicase [Bacteroides sp. 4_1_36]
          Length = 1099

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 130/858 (15%), Positives = 270/858 (31%), Gaps = 98/858 (11%)

Query: 100  LKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L +  +     R+R  N+ ++    L  L L  +++       +++       L+ +TN 
Sbjct: 318  LLQEAERMRPQRNRTLNSCRLSLQHLNKLQLLNHIDEEVRTLNREHNRF----LLSDTNA 373

Query: 159  LLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            LL    +   S+++  KI   I +++IDE QDTS +QW+  R L  +             
Sbjct: 374  LLHKLVREGDSSFVFEKIGANIRNVMIDEFQDTSRMQWDNFRLLLLEGLS------QGAD 427

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
               VGD KQSIY +   +   +        K          +  L  + RS  +I+   +
Sbjct: 428  SLIVGDVKQSIYRWRNGDWGILNSLGN---KELNLNSFPVRVETLKTNRRSETNIIRFNN 484

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +VF+   +       +         +      V        Q   +         ++ + 
Sbjct: 485  QVFTAAIDYLNALHLNELKEDCLPLKRAYADVV--------QESPKSTEYGYVKATFLEP 536

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + +        +   +  ++             +   DI +LVRK K+ P I      
Sbjct: 537  DDEHNYTEQTLLALGEEVQRLLEEG----------VTLNDITILVRKNKNIPPIADYF-- 584

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
               +  +SVV ++ F L   LAI  LM   R + + E+ ++   ++++     + D+   
Sbjct: 585  -DKELHLSVVSDEAFRLDASLAICMLMDALRCLSNPENKIAEAALMENYKLQMTNDEQSG 643

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                    ET                              +    ++    +        
Sbjct: 644  FIIATPLPETFTSR----------------------RETLRLMPLYELLEELFSIFG--- 678

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                    +    L  F +      Q++ S L   I   ++     K   S   + +RI 
Sbjct: 679  ---MSRIEKQDAYLFSFFDAVTEYLQSNSSELDSFIRYWDET-LCSKTIPSGEMDGIRIF 734

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP--SLNDDPGIPIWIPQSKSRNNIVS 633
            ++H +KGLE   V +     ++ +  + + +  +P     +   +      +    +I  
Sbjct: 735  SIHKSKGLEFHTVLIPFCDWKLENETNNQLVWCVPPEEPYNAISLVPVNYSTTMAESIYR 794

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                H +     +   LLYV  TRA   LI+                    +        
Sbjct: 795  QDYLHERLQLWVDNLNLLYVAFTRAGKNLILWSRKEQKGTMSELLANTLPRIAKDGAGSW 854

Query: 694  RVKKIKLT-NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
              +        I        +    +P N   +     ++ +  ++ P+       N ++
Sbjct: 855  DEEAAIYENGRICPSPVPVSQHDADNPANDEAKPLYYEQKPLYCERKPEVYEQQPVNRLS 914

Query: 753  EPYI--------------LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
            +  +                 S         ++   S  +  NRG ++H L   I T  E
Sbjct: 915  QKPVKLPVHMESMLHDIEFRQSNRSADFIAGVDEAESSQRFINRGRLLHTLFSAIET--E 972

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
                N I+    +        E + +     R    P +    S      +     I   
Sbjct: 973  KDIDNAISQLVFEGVIGRSETE-EEIRNLTQRAFSLPQVKDWYSGTWQ--LFNECDIIWQ 1029

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS-YPN 917
            +   + + R D++ +  + I + ++K               +  Q+  Y ++L    Y  
Sbjct: 1030 ENGELRTRRPDRVMMRGEEIVVVDFKFGKPN--------KKYNKQVQGYMQLLVRMGYVA 1081

Query: 918  KSLVCLLIYVSEPKVFII 935
            +++   L YV E  +  +
Sbjct: 1082 ENIRGYLWYVEENNIEPV 1099


>gi|39979183|emb|CAE85555.1| related to ATP-dependent DNA helicase [Neurospora crassa]
 gi|54633283|dbj|BAD66822.1| ATP-dependent DNA helicase [Neurospora crassa]
          Length = 1105

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 109/692 (15%), Positives = 206/692 (29%), Gaps = 157/692 (22%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+   +++ +LD++DL++   +LL+K              I  +LIDE QDT+ +Q+
Sbjct: 184 YTEYQTHLERSNLLDYDDLLVRCVELLRKFPSCV-------SNIQTVLIDEYQDTNGVQY 236

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E++R L +            + +  VGD  QSIY +  AE K + R  R   K       
Sbjct: 237 ELMRLLAQ----------KHQRITIVGDPDQSIYGWRSAEIKNLWRLLRDYPK------- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I L  ++RS+  IL +   V    +               R               
Sbjct: 280 -TDEISLEENYRSSQAILDLSLLVIQQDKKRYQKVLKPVHDRGSRPV------------- 325

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQ 372
                                 L +  +AS  A  I   I   ++ + ++        + 
Sbjct: 326 ----------------------LRKLKNASTEAEWIVAEIRRALLMSGSM--------LT 355

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D+ VL+R    +  +            I       F   +   IK ++   R I   +
Sbjct: 356 HNDVAVLLRSASLSRHVESAL----GKAGIPYRMVGGFKFYERSEIKTILDYLRVIHQPD 411

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI----------------QKFANC 476
           ++ +F  ++  P     +  I  +  +  ++      +                +     
Sbjct: 412 NNDAFGRIMNVPKRGIGDGTIKNLIEEAEKSSLSLYSLLVKHCRGDRTAKTKITKHAEQK 471

Query: 477 GISKFQHVIKYIHELIHIAQFCSPH---DFFTLILGAK---KGRQQFISRFGNEVIDVLD 530
              +   ++  I + +  A   +P    D    +L A       Q        +    + 
Sbjct: 472 ISGELIRMLNGIRKKMEEAAESNPFGLVDLIEHLLTALNFQNYLQVTYPDDHEQRWANVQ 531

Query: 531 EFLNFTLRN-------------------EQNSYSSLQELISELEQYPPTIKRAH-SANHN 570
           EF++                        +      L + ++ +       K      N  
Sbjct: 532 EFISLANDFVRDLHVSGEDALPEIEGLEQSKEEEVLPQFLANVSLASDAQKGEEGQENKP 591

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V I T+H AKGLE P+VF+    +    H                              
Sbjct: 592 LVTISTIHAAKGLEWPIVFIPAVYNGSIPH------------------------------ 621

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS--NTSNEKKSNQRTWYDMVYDS 688
                   ++    +E  RLLYV MTRA   L +      +  + +++   ++   V +S
Sbjct: 622 --------MRSEDGDEERRLLYVAMTRAQSLLYLSYPVYHSPGSSERTEMSSFVSPVANS 673

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP--LEREETIKQLMDEQKIPKKLFSP 746
           F       +  L   I K             +  P     E+ +  +  +    +     
Sbjct: 674 FAKKGPTFERPLMTHIAKVLQRELPSEKEIFKGIPNMSHTEDNMYPIDPDDAFQESGQGF 733

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
             +    P + NP  I T            + 
Sbjct: 734 DSSRSKRPKLYNPVAISTGDGHEEPQWAKPHA 765


>gi|126090202|ref|YP_001041683.1| hypothetical protein Sbal_4565 [Shewanella baltica OS155]
 gi|126174495|ref|YP_001050644.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS155]
 gi|125997700|gb|ABN61775.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS155]
 gi|125999858|gb|ABN63928.1| hypothetical protein Sbal_4565 [Shewanella baltica OS155]
          Length = 1273

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 140/1027 (13%), Positives = 312/1027 (30%), Gaps = 165/1027 (16%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            +   LSL +S E   K  WP       D    +   +        K      + +     
Sbjct: 225  DALALSLRQSLERF-KLAWPR----GRDGLLALLHGLPLNGTRFGKATDKYPKLAAMFDA 279

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKK--SPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             + +          K     ++   ++NK    P + E         +   ++  T    
Sbjct: 280  LDNWLAFGHGLPPLKELEALSLSELKLNKGGVIPSVSEA------PLMDHMEQLATLITA 333

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                   +    ++  + + K++  VL  +DL+      L     +  +   +       
Sbjct: 334  IKPAFLYSAKLGISERFAQQKQQKNVLTPDDLLTTLASAL--HANNETLPKAVATRFPVA 391

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTH----SSPRTLFAVGDEKQSIYSFHGAEPKR 236
            LIDE QDT  +Q+ +   + +  +  +  +     +  +L  +GD KQ+IY+F GA+   
Sbjct: 392  LIDEFQDTDPLQFAIFSGIYQGRYSFEKQNADATENKLSLLMIGDPKQAIYAFRGADIHT 451

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
             +  +   Q              L  ++RS+A+++  V+ +FS   +          +++
Sbjct: 452  YIEARNHTQAHY----------HLDTNYRSSANMVAGVNHLFSQHHDPFISQSIPFDSVK 501

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                      + ++        +      +    S  + L + ++  +LA   A  I+ +
Sbjct: 502  -------TPSSAKVKTLTEKTANPAALRLRLLSESAENGLNKTTARHLLAEDAAAEITRL 554

Query: 357  I-GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            +        +  K  + AKDI +LVR R +  ++        +   I  V   R  + D 
Sbjct: 555  LTDAANGACHSPKGPLIAKDIAILVRDRNEAAVMKTAL----SKRHIGAVFLSRDSVFDT 610

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            L  +++  + R + + +D+ +    L + L  +S + I          + + E       
Sbjct: 611  LEAREMALILRSLANPKDERALRSALATALLGYSAEQIHAFNQDEEHRQLLLEQFFNLHQ 670

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                +       +  L+ +A           +L     +     +        L +F + 
Sbjct: 671  VWQKR-----GIMPALLSLANSTK---LIDRLLHTASTQTDAQEQDATNGERRLTDFRHL 722

Query: 536  T--LRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
               L+ +      +  L++  EQ           +    +  N V+I+T+H +KGLE PV
Sbjct: 723  AELLQQKATELDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGLEYPV 782

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
             F+        + +    M    + +      +W  +            +  K+ T  E 
Sbjct: 783  CFVPFVSLARDNRRRPTPMLYHRTNDAGEQELVWDIEGTDEG------WERAKQETLAED 836

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK------LT 701
             RLLYV +TR      +   +++   K   +   ++            +           
Sbjct: 837  LRLLYVALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGIGDSECDFARICNAAQ 896

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK------------- 748
                  E I+ +      +  PL   + I Q++  + + ++  +P +             
Sbjct: 897  QLAQDVEAISIDKVPDDIDERPLPSSQDIAQILSAKTLTRQYCTPWRVGSYSGLVKNTSH 956

Query: 749  --------------NDINEPYILN-PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                           +    + L+ P     + +  + +  +  +  N G  +H +L+ I
Sbjct: 957  GKAAPGADDEALGTLEYMAAHTLSIPDDPSHEQQDGMLNRFNFERGANAGSFMHLVLEEI 1016

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM----------------- 836
                  +              + P  +   L      +L  P+                 
Sbjct: 1017 DFTQADRDLPQQLPKAMLKYGIAPEWQT-VLHTWYLDVLHAPLGLMPTTVSSTTVPTTMP 1075

Query: 837  --------------------MTTAMSCDSYSEVSV---------------------SGKI 855
                                +      D+  E+                          +
Sbjct: 1076 STSALENNSRTPKPEHPDLCLAKLSPQDTLVEMEFYLPLSELKDTELNALLQQFGYESTL 1135

Query: 856  NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSI 906
                   ++ G ID     Q   +I +YK++H             +     + +  Q  +
Sbjct: 1136 KFDDLKGMLKGFIDLTFEYQGKYYIADYKSNHLGDNINAYHQSALQSAITDHRYDLQYIL 1195

Query: 907  YEKILKD 913
            Y   L  
Sbjct: 1196 YSLALHR 1202


>gi|15639096|ref|NP_218542.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189025336|ref|YP_001933108.1| Rep helicase, single-stranded DNA-dependent ATPase [Treponema
           pallidum subsp. pallidum SS14]
 gi|3322363|gb|AAC65097.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189017911|gb|ACD70529.1| Rep helicase, single-stranded DNA-dependent ATPase [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059520|gb|ADD72255.1| ATP-dependent helicase PcrA [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 657

 Score =  250 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 99/588 (16%), Positives = 186/588 (31%), Gaps = 127/588 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y  A K    +DF+DLI+    +  +      I        ++IL+DE QDTS 
Sbjct: 158 RALWHEYHTALKLFNAVDFDDLIVLPIQIFSEYPD---ILASYKSRYHYILVDEFQDTSA 214

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+ +++ L              + +  VGD+ QSIYS+ GA    +L  ++        
Sbjct: 215 QQYRLMKMLA------------TQNICVVGDDDQSIYSWRGAHHDNILSFEKDFPY---- 258

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                + I L  ++RST  IL   + V +     +  +                     L
Sbjct: 259 ----ATEITLEQNYRSTGTILAAANGVIAHNTQRKEKA---------------------L 293

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI-AYTISNMIGTDTIFSNGKKR 369
           W    S    +           F+   +   A  +A  I A  I                
Sbjct: 294 WSGNDSGKPIE----------IFNPETERDEAIFIANTILAEQIRA-------------- 329

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                   VL+R      +I  +         I    +          IKD+++  R I 
Sbjct: 330 SYSFSSFGVLLRTNSFMRIIEDVF----LQENIPYRVSGGMSFFQRKEIKDVLSYLRVIS 385

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY-----IQKFANCGISKFQH 483
           + +DD++ + ++ +P     +  +  +      +  +V+        +  A       + 
Sbjct: 386 NPDDDVNLLRIINTPRRGIGKKTLHLVSDIANTQQCSVFNALNQIINKTHAVDLKESHRT 445

Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNEVIDV------LDEF 532
            ++   +LI  A+       +        +   +     I  F             ++  
Sbjct: 446 AVENFLQLITQARTHLLSGKNLAYKVRKFVEDIQYFNYLIQEFQKNEHAARFKFLQIEHL 505

Query: 533 LNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           +      EQ + + SL + ++ +                 V +MT+H +KGLE PVVF+ 
Sbjct: 506 VESIEHWEQSSEHGSLYDYLNRVTLLARDNV--QKETEGAVSLMTIHASKGLEFPVVFIA 563

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
              +    H+                                      +  + EE  RL 
Sbjct: 564 GVEAGTIPHE----------------------------------RSIEEVHSIEEERRLF 589

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           YV +TRA ++L +          K  +RT    + +   +  R    +
Sbjct: 590 YVAITRAKEKLYLTHCRTRKRGGKREERTASPFLDEIPKHLVRAHAPE 637


>gi|326629652|gb|EGE35995.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 707

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 104/670 (15%), Positives = 216/670 (32%), Gaps = 121/670 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 144 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 201

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 202 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 258

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 259 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 300

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 301 LQVIKLEQNYRSSGRILKAANILIANNPHIFEKRLFS----------------------- 337

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 338 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 376

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 377 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 432

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        ++++         QK    G         +
Sbjct: 433 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 492

Query: 488 IHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +A+        D    I       +   S    E  +  +++  ++        
Sbjct: 493 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 552

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 553 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 612

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 613 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 637

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 638 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 697

Query: 720 ENTPLEREET 729
                +R ++
Sbjct: 698 AMMAAKRAKS 707


>gi|283787540|ref|YP_003367405.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
 gi|282950994|emb|CBG90671.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168]
          Length = 677

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/671 (15%), Positives = 215/671 (32%), Gaps = 121/671 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    + +    L++ +    +    ++         K       +  +  
Sbjct: 111 TDQLALLKELTEGLLEEDKVLLQQLISTISNWKNDLQTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHVIKY 487
            +F+ ++ +P        + K+        ++++                         +
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDLGLAQTLTGRGYESLTRFTHW 459

Query: 488 IHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +A+        D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEVQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P VF+V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVFMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +LI           +  +      + +   +D   ++ +   S  +          +  
Sbjct: 605 KELIFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQNHLANLK 664

Query: 720 ENTPLEREETI 730
                +R +  
Sbjct: 665 AMMAAKRAKPQ 675


>gi|157962241|ref|YP_001502275.1| exodeoxyribonuclease V subunit beta [Shewanella pealeana ATCC 700345]
 gi|157847241|gb|ABV87740.1| exodeoxyribonuclease V, beta subunit [Shewanella pealeana ATCC
            700345]
          Length = 1238

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 143/971 (14%), Positives = 307/971 (31%), Gaps = 133/971 (13%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
            +WP    Q   +   + L          KKA    + ++     + +          K  
Sbjct: 252  IWPREREQTETLLHALPL----NGARFGKKADGYPKLAKMLDDLDNWVAFGQALPPAKVL 307

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
               ++   ++NK      E     Q   +   +R                   + + + +
Sbjct: 308  EALSLNELKLNKGG----EVPTAQQAPMLDHIERLAQLIANLIPSFLYCARDGIASRFAK 363

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K +  +L  +DL++     L     +  +   I Q     LIDE QDT  +Q+E+  ++
Sbjct: 364  QKLERNLLTPDDLLLTLAKALNVSQDNR-LASSIAQRFPVALIDEFQDTDPLQFEIFNAI 422

Query: 200  TEDFFV------GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +          G  T +   +L  +GD KQ+IY+F GA+    ++ +           Q
Sbjct: 423  YQSSGSKSTAANGDKTPNDKLSLLMIGDPKQAIYAFRGADIHTYIQARA----------Q 472

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RS   ++  V+ +F+  ++           ++  S    +         
Sbjct: 473  TAKHYNLDTNYRSNRQMVDAVNGIFNHRDDPFISQSIPFEPVKASSFADKK-------VL 525

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQ 372
                 DS     +         L + ++  ++A  +A  I+  +I           + ++
Sbjct: 526  NERAADSSALRLRLLSEEAEKGLNKTTARQLIADDVADEIARLLIDAQQNLCAIGTKPLR 585

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            AKDI +LVR R +      + R   ++ +I  V   R  + + L  ++L  +   +   +
Sbjct: 586  AKDIAILVRDRHEAN----VVRAALSERQIGSVFLSRDSVFNTLEARELALVLYAMADPK 641

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
            D+ +    L + L  +S + I        + +T+ E   +     + +          + 
Sbjct: 642  DERALRSALATSLLGYSAEAIHSFNQDEDKRQTLLEQFAQLHQVWLKR--------GIMP 693

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
             +    S       +L  ++G ++            L E L         S + +     
Sbjct: 694  ALLTLASQTQIIERLLSGEEGDRRLTD------FRHLGELLQQKATELDGSSALINWYEQ 747

Query: 553  EL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
             L         +    +  N V+++T+H +KGLE P+ F+              +    P
Sbjct: 748  ALIENLPNEEAQLRLESEQNLVQVVTIHKSKGLEYPICFVPFVS-----LSRDNRKRPAP 802

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             L  D    IW  +               K+ T  E  RLLYV +TR   +  +   +++
Sbjct: 803  MLYHDDNQLIWDIEQTDEG------WDRQKRETLAEDLRLLYVALTRPVLKCYLYIANHS 856

Query: 671  SNEKKSNQRTWYD------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP- 723
               KKS   +         ++       +  + +     + + +  A   S      +  
Sbjct: 857  RFTKKSGMSSQLHETAIGYLLGVEDKACDYDRLLAQAQLLQQKDPQAISLSELPAAGSDE 916

Query: 724  --------LEREETIKQLMDEQKIPKKLFSPIKN--------DINEPYILNPSTIDTKGK 767
                    LE+E+T +Q +  + + + + +P +          +    +L     +   +
Sbjct: 917  YSDTTLVVLEKEDTTEQQLAPKILNRPMLTPWRVGSYSGLVKHLAHEKVLPGMDDEQFPE 976

Query: 768  TNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
             ++         S  +  +  N G  +H +L++I                          
Sbjct: 977  LDVIQDEVDSSPSRFTFERGANAGSFMHLVLELIDFTQAETDLEQQLPIAMAKYG-IDES 1035

Query: 820  EYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSVSGK------------------ 854
              + L      LL  P+       +    +     E+                       
Sbjct: 1036 WTEVLKDWYLDLLYAPLASDNSLMLAQLTAGQKLVEMEFYLPINALSCDKLNSLLTEFGY 1095

Query: 855  ---INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIA 902
               ++  +   ++ G +D         FI +YK++H             +     + +  
Sbjct: 1096 SAGLSFDELQGMLKGFVDLTFEHNNQFFIADYKSNHLGDDLSQYHYANMQHAIRSHRYDL 1155

Query: 903  QLSIYEKILKD 913
            Q  IY   L  
Sbjct: 1156 QYIIYTLALHR 1166


>gi|328947535|ref|YP_004364872.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
 gi|328447859|gb|AEB13575.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
          Length = 1265

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 158/1009 (15%), Positives = 305/1009 (30%), Gaps = 157/1009 (15%)

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKK-SPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
               FS  +  F +   +     + +  NK+   ++KE +K+ ++    +    N  K F 
Sbjct: 283  ANSFSAAAQVFYSGINSVCSISMNKGGNKEPVKEIKETIKRIRETIPVVVSVVNFIKNFS 342

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            +      L           K+ +  L F+D+      +L        IR +    I  I+
Sbjct: 343  AQKRMFELLDEFLEEVNNTKRISGNLSFKDVGDLALRIL---IEQPDIRKQQKNLIKKIM 399

Query: 182  IDEVQDTSLIQWEVIRSLTE--------------DFFVGKNTHSSPRTLFAVGDEKQSIY 227
            IDE QD +    E++  ++E              +FF     + S   LF VGDEKQSIY
Sbjct: 400  IDEFQDNNKKNKELLFLISENDGKELLIENKTEAEFFAELENNISAEKLFFVGDEKQSIY 459

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F GA+     + K+  +    +  Q+   + +  ++RS+  +L   + +F    ++  L
Sbjct: 460  KFRGADVSVFNQLKKSLKD--NSGSQENVNLNMTNNYRSSVPLLYSFNLMFGNCNDSHPL 517

Query: 288  SEDS------------------TTTIRHRSSRIGQ-VGTVQL--WEQVVSQHDSQCNPQQ 326
            +E                        +H + +  +   +V        +   ++  N   
Sbjct: 518  NETEIPSLFYSEENGIENLKSYEAEYKHNALKKNELPCSVDASNVPVHLCLLNTGENEDG 577

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
             ++  + +     S     A  IA  I  +           K      +  +L   R   
Sbjct: 578  NNFADFVNYGKCLSENETEAYFIARKIYEL----------SKIDSNFNNYAILDNSRSG- 626

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                F  +   + + I    + +  +     + D  +  RF +   D  +F   L SP  
Sbjct: 627  ---RFYLQRYLSLFNIPYTVDRQTNVFSEGIVNDFYSFLRFCVYPSDSNAFAAFLASPFA 683

Query: 447  NFSEDDIFKICTQR----HETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQF 497
              S   I  I +        +E ++   ++      ++  + K+    K+  EL      
Sbjct: 684  GISIQGIQNILSASVKKTKNSEIIFSAFEENDEISLSDSDMKKYLAAKKFYEELRDNILS 743

Query: 498  CSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-- 554
             S      L+        +  ++R      +  D       + E     S+   + +L  
Sbjct: 744  QSLTKSLELLWYKTGYYFETILNRNLTLYAEQFDLLYETARQAENEG-KSISWFVDQLGI 802

Query: 555  --------------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                           +             + V+IMT+H +KGL+   VF++       + 
Sbjct: 803  AKKKEISSYMNDESVELELKEISYPIEKPDAVKIMTIHQSKGLQFKHVFVIGIWGNPKTQ 862

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS-DLIKHLKKSTQEEYNRLLYVGMTRAS 659
                        ++     + +       N  S    +        E  R +YV +TRA 
Sbjct: 863  ITGTFFFDEDGFDEKIATGVSLCALDEGGNYFSVRQKEDSALRELAEQKRKIYVAITRAE 922

Query: 660  DQLIICKHSNTSNEKKSNQRT-------------WYDMVYDSFHNDERVKKIKLTNSINK 706
            + + +    + S E K    +              + +    +  +          S   
Sbjct: 923  EDVHLVGSFSRSKELKKFDESDNAEKRYDGSISLMHKLCRFYYQKELYTDNDFSFESYCN 982

Query: 707  DEW-----IAYEWSTHHPENTPLEREETI-----------------------KQLMDEQK 738
            +         +++   +P +T +  +E                         K      +
Sbjct: 983  EPVFNKNGAPFDFIKINPVSTKVRADEKTNLDELRQKKIKLFSAFYDKIPFEKDNDFPHE 1042

Query: 739  IPKKLFSPIKNDINEPYI-------------------LNPSTIDTKGKTNLESLLSDNQT 779
               K  +P   +   P                     +  S  D       +S  ++   
Sbjct: 1043 FSDKTQTPSGLEKLPPKTTVKVDGAFKINEEYSSIDSILKSATDISEDNEEDSAYAEFNY 1102

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
             + G   H  L+ + +                       K  + LL +I  + E    T 
Sbjct: 1103 ADFGKFAHSYLECLVSTGNILNAENFIDRIVSKKLSENQKAKEILLKAIVSMCECFEKTY 1162

Query: 840  A-----MSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEI 893
                   +  S        K      D I +G +D I     Q +FI +YKT   V    
Sbjct: 1163 LGKKVADAKKSNRLCKTENKFKFLMDDTIFTGSMDLIFQDSDQKLFIVDYKTDRAVK--- 1219

Query: 894  EHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKL 940
               P  +I QLS Y K   + +    K +   L Y+   K   I    L
Sbjct: 1220 ---PELYIEQLSCYRKAASEIFHVDTKDIETFLYYLRYDKEIDISAYTL 1265


>gi|187477416|ref|YP_785440.1| nuclease/helicase [Bordetella avium 197N]
 gi|115422002|emb|CAJ48524.1| putative nuclease/helicase [Bordetella avium 197N]
          Length = 1107

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 136/985 (13%), Positives = 273/985 (27%), Gaps = 133/985 (13%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVS-------------LSMETGNPTILKKAQTL 53
            L+     E + + L      ++  +   +               + E       + A  L
Sbjct: 200  LAYGLDREGLEQALAETLAEELDILRGLMPPGCDAALCGPARMAAAELSAGEDARLAPLL 259

Query: 54   QQASQTQCIEERFSLLSSF---FLTQKFTPQ------KNIITQEINKKSPDLKEKL---- 100
                      +      +     LT   T +      K +             + L    
Sbjct: 260  DWVDPLFPDAQDLPRWRAVAHLLLTGSGTLRSPKGVTKALGFPAKTAHKEAFVQWLSGFS 319

Query: 101  --KKSQDEFIKIRD---RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
              +        +RD      T   ++   A L          ++   +   +DF ++   
Sbjct: 320  GDEAWISRLAALRDMPDAGFTEAQWEVLSAQLVTLALAVGQLQKVFAEAGEVDFIEIAQR 379

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
                L   D    +  K+D  I H+L+DE QDTS  Q +++ SLT  +  G       RT
Sbjct: 380  AQRALGDADDPGELLLKLDASIRHLLVDEFQDTSQTQIDLLTSLTSGWQPGDG-----RT 434

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            LF VGD  QSIY F  AE    L+              +   ++L  +FRS   ++  V+
Sbjct: 435  LFLVGDPMQSIYRFRKAEVGLFLQAAER-----GIGELRLEYLQLTDNFRSQGGVVEWVN 489

Query: 276  KVFSI-PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + F+         +  +       +      G    +    +                  
Sbjct: 490  RSFADLLPAENDAAAGAIRYSASAAFHPVLPGEAVRFHAAWATDGPASGDAA-------- 541

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                       A  IA  ++     +            A  + +LVR R     ++    
Sbjct: 542  -----------AEDIAVALARQALAEHRG--------SAHPVAILVRARAHLGSLSRRL- 581

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                   I     +   L     + DL+ L R +    D ++++ +L++P    + + + 
Sbjct: 582  ---AQEGIPSRAVELVPLRLRPVVADLVQLLRALSHPADRMAWLSVLRAPWCGLTLESLQ 638

Query: 455  KICTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
            ++    H+             +     A     +   V   + +  + +       +   
Sbjct: 639  RLFGADHQAPVPELLRLALAPDAPAILAEDEHRRLSRVAALLLDRGNDSGALPLAAWLQR 698

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
            +  A  G   +         + L + +     +     + L   ++ L            
Sbjct: 699  VWQALGGAALYAGVGAASDAESLFQLVERLAPHGGLDIAVLDTAVARLFAA-----PDVE 753

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                 V IMT+H +KGL+   V L               +    +L      PI      
Sbjct: 754  GEQGAVEIMTMHKSKGLQFDSVILYGLHRVPR-GDQAPLVRFENNLGRVLMGPIKARADA 812

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
              + +   L     +    E +RLLYV  TRA  +L +  +     EK         ++ 
Sbjct: 813  EADPLSRYLGAREARRAAYETDRLLYVAATRARKRLHLIGNLVFDAEKGLRAPAASSLLG 872

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
              +++ +  +  +   +  +     ++             ++    L+  +       + 
Sbjct: 873  RLWNHVQAGEAPEAAPAQAQASGPFWQG------EPLRRLDDATVALLAARPGWPAAAAG 926

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL--------QVIFTLPE 798
               D   P                   L        G + H  L        Q       
Sbjct: 927  FLADAEHPA----------------WQLEAGYEAAIGTLAHAWLARIGEEGGQYWDAARL 970

Query: 799  HKRKNFITSYCTKNAKLWP--AKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKI 855
             + +  +    T+              +L ++   L +      +S   +  E  +    
Sbjct: 971  SEHRPAMRRQLTRAGIPDSQADDAADAVLQTLQATLSDGPGIWLLSQSRARREWPLI--- 1027

Query: 856  NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH-----IPYTHIAQLSIYEKI 910
                    +S  ID    ++    I +YKT    P E        +   H  QL  Y   
Sbjct: 1028 ---DATGRVS-VIDLALSTEDGWLIVDYKTGQAQPGEGAEHFAQRMRLRHAEQLKRYCAQ 1083

Query: 911  LKDSYPNKSLVCLLIYVSEPKVFII 935
            +      +     L +        +
Sbjct: 1084 VTALD-GRPARAALYFPRAQAWIEL 1107


>gi|330954206|gb|EGH54466.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae Cit 7]
          Length = 1230

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 127/1004 (12%), Positives = 279/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +     E          LT     +       ++           ++  +    
Sbjct: 272  EKLAAWAADDTQEALDLGTGFTRLTPDGIAEAWKSEPPVHPAF--------EAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDGLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HGAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEANDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E  +     
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVESVNHVFTRAEQREQGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                  H +         Q  ++ +    +               +        LA   A
Sbjct: 485  FLFRDEHGNQVPFSDALAQGRKETLHVDGTPLTALTVWHLQSDQPVSGVVYRQQLAASCA 544

Query: 351  YTISNMIGTDTIFSNGKK------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++        G        R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFVTPDNTLRGLRPADIAILVRDGKEAQAVRQQLTA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ + +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWERRVMQFRAYRAIWRSQGVLPMLRRLLHDFALPQTLMTRNDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +            +S+        LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADG----------KSQISLQPTEALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      +        +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNANTSMLHRSALGYLLGGGAALAESAEL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN--- 749
            N   +D     +     P   P +   +                +       +       
Sbjct: 877  NVWLRDLAQGCDAIALQPVPEPTDERFSAPSNEAALVKLLVPKRRAAENWWIASYSALRI 936

Query: 750  -----DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQ- 791
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEG 996

Query: 792  ------VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                   +      K ++ +   C +           + L  +  + L          + 
Sbjct: 997  AGNEGFAMTAHAPEKLQDAVARRCNRRGWAGWINTLSDWLQHMLNMPLRLSPDAAPVALG 1056

Query: 839  TAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQIS 872
                 + Y  E+     S  +N  + D ++                       G ID   
Sbjct: 1057 ELDQPNQYRVEMEFWFASNNVNVAQMDALVRRLTHDNAPRAGTETISLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +  +         +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGSDDSAYTQLAMETAILDNRYDLQYVLYLLALHRQLKARMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F  P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSASQGAYFTRPPRELIESLDLLFQGKP 1220


>gi|237719544|ref|ZP_04550025.1| ATP-dependent DNA helicase [Bacteroides sp. 2_2_4]
 gi|229451404|gb|EEO57195.1| ATP-dependent DNA helicase [Bacteroides sp. 2_2_4]
          Length = 575

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/474 (16%), Positives = 160/474 (33%), Gaps = 87/474 (18%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A +   + +   Y +  ++   +DF+DL++ T  L +       +  +   +  ++L+D
Sbjct: 172 AAKMPAIRDIYTRYWDRCRQAGAMDFDDLLVYTYILFRDFPE---VLARYRDQFRYVLVD 228

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q  ++  LT++           + +  VGD+ QSIYSF GA+   +L   +I
Sbjct: 229 EYQDTNYAQHSIVLQLTKE----------NQRVCVVGDDAQSIYSFRGADIDNILYFTKI 278

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST  I+   + +    E     +  S            
Sbjct: 279 YPN--------TKVFKLEQNYRSTQTIVCAANSLIEKNERQIRKAVFS------------ 318

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                          + +       + +Y D    +         +A  I+ +       
Sbjct: 319 ---------------EKEKGEPIGVFQAYSDVEEGDI--------VANKIAELRRE---- 351

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      D  +L R    + +     R       I               IKD++A
Sbjct: 352 -----YRYGYADFAILYRTNAQSRIFEEALR----KRSIPYKIYGGLSFYQRKEIKDVIA 402

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQK-------FAN 475
             R +++  D+ +F  ++  P     +  + KI +       +++  + +          
Sbjct: 403 YFRLVVNPNDEEAFKRIINYPARGIGDTTVGKIISAATDHGVSLWAALCEPLSYGLDINK 462

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEF 532
              +K Q   + I   I      + ++  T I+               E     + ++E 
Sbjct: 463 GTHAKLQGFRELIEGFIVDQADKNAYEIGTNIIRQSGIINDVCQDTSPENLSRKENIEEL 522

Query: 533 LN------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
           +N         + E N   SL + +SE+           + +  ++ +MTVH+A
Sbjct: 523 VNGMNDFCALRQEEGNPNVSLTDFLSEIALLTDQD-SDKADDGEKITLMTVHSA 575


>gi|239813731|ref|YP_002942641.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239800308|gb|ACS17375.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 701

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/602 (16%), Positives = 189/602 (31%), Gaps = 114/602 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   + A YEE       +DF+DLI     LL+  D    +R K    + HIL+DE QD
Sbjct: 159 RITARIMARYEERLTAYQSVDFDDLIGMPLKLLRDFDE---VRAKWQAALGHILVDEYQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+EV+++L  +               AVGD+ QSIY + GA    + +        
Sbjct: 216 TNATQYEVLKALAGE----------RGRFTAVGDDDQSIYGWRGATLDNLRKLPVDYPA- 264

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST+ IL   + V                              
Sbjct: 265 -------LKVIKLEQNYRSTSAILRAANNVIGPNPK------------------------ 293

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             L+ + +     +  P +              S +  A R    I ++   DT     +
Sbjct: 294 --LFPKTLFSELGEGEPVRVV---------DADSEAHEAERAVARIVSLRAGDTAIEGKQ 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +  + +D  +L R      +     R      +I    +      D   IKDL    R 
Sbjct: 343 YK--EFRDFAILYRANHQARVFEQALR----KAQIPYKVSGGQSFFDRAEIKDLCGWFRL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
            ++ +DD +F+  + +P        +  +         +++E +             +  
Sbjct: 397 WVNNDDDPAFLRAITTPKRGIGHTTLASLGTFASQYKLSLFEALFSPSLPSVMPKRTLEG 456

Query: 481 FQHVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDE 531
                +YI++L + A+     +    F    L      +       +E         + E
Sbjct: 457 IHEFGRYINDLEYRARRTMGAEDSRTFMLDWLKEIDYEKHLYDGEDSEQAAAARWTNVME 516

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYP------------PTIKRAHSANHNEVRIMTVHT 579
           F+++  +    +          +E                +       + N V + T+H 
Sbjct: 517 FVDWMSQRAGGTIDDASGADGNIETERKSLLEVAQTISLLSTISEREQDQNVVTLSTLHA 576

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P V L+     +                               +N     +   
Sbjct: 577 SKGLEWPHVMLIGVTEGLLPF------------------------KLEDDNGRQLQVSDD 612

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                +E  RL+YVG+TRA   L +         ++         + +   +    ++  
Sbjct: 613 TLQRLQEERRLMYVGITRAQRSLAVSWTKKRKQGREMVPCVPSRFIAEMGLDKATTREDP 672

Query: 700 LT 701
             
Sbjct: 673 RE 674


>gi|71909490|ref|YP_287077.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB]
 gi|71849111|gb|AAZ48607.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB]
          Length = 663

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 101/559 (18%), Positives = 183/559 (32%), Gaps = 116/559 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           TLA +    YE   K    +DF+DLI     L ++      I  K    + ++L+DE QD
Sbjct: 160 TLAAHAYLSYEATLKAYQAVDFDDLIGLPVVLFQQHPD---IAEKWQNRLRYLLVDEYQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ LT                 AVGD+ Q+IY + GA+   + +        
Sbjct: 217 TNACQYQLLKLLTG----------VRAQFTAVGDDDQAIYGWRGADIDNLKKLPAEFPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST  IL   + V +  E                         
Sbjct: 266 -------LKVIKLEQNYRSTVRILKAANNVIANNEKLFDKK------------------- 299

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW  +        + +Q   T+  D+  +       A  +   +           +  
Sbjct: 300 --LWSDL-------GHGEQIVVTACRDNDAE-------AEGVVMKLQA---------HRF 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +   + KD  +L R            R    D++I  + +      D   IKD+ A  R 
Sbjct: 335 QHRGKFKDYAILYRSNHQARGFEEYLR----DHRIPYLLSGGKSFFDKPEIKDITAYLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SK 480
           + +++DD +F+    +P        +  +         ++++   +              
Sbjct: 391 LTNEDDDPAFIRAATTPKRGIGAATLQVLGTYAGERHISLFQAAFEEGFAQRVQARQLEP 450

Query: 481 FQHVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                 +I+ L H A          D    I            R        + EF N+ 
Sbjct: 451 LLEFCNFINRLQHRAGTEPAQQVLPDLLKAIDYETFLYDHEEERTAQTRWGNVCEFANWL 510

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            +  +    +L +L   +        +    +++ V++ T+H AKGLE   VFLV     
Sbjct: 511 NKKGEEQGKTLIDLTQSIALINMLD-KQKDEDYDAVQLSTLHAAKGLEYKHVFLVGIEEG 569

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +  H                                    + +  +  EE  RL+YVG+T
Sbjct: 570 ILPH-----------------------------------RESVDPAKIEEERRLMYVGIT 594

Query: 657 RASDQLIICKHSNTSNEKK 675
           RA   L I         ++
Sbjct: 595 RAQHTLNISYCERRKQMRE 613


>gi|91785713|ref|YP_560919.1| ATP-dependent DNA helicase Rep [Burkholderia xenovorans LB400]
 gi|91689667|gb|ABE32867.1| ATP-dependent DNA helicase Rep [Burkholderia xenovorans LB400]
          Length = 696

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 102/621 (16%), Positives = 196/621 (31%), Gaps = 130/621 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AAIVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELVKLLAGKRAA----------FTAVGDDDQAIYGWRGATLENLGQLSKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   T+ 
Sbjct: 279 -----LHLIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDTIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  +L R      +   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 350 RANFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDICAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           +  DD +F+  + +P        +  + +   +   +++E +       + +   I   +
Sbjct: 406 NANDDPAFIRAITTPRRGVGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSPRQIEPMR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNF--- 535
               ++  L   A+  +       ++ A             R        + EF+ +   
Sbjct: 466 VFCDFMQRLTDRAEKDAAGTLLDELMDAIHYEAYLYDAFDERQAQSKWQNVLEFMEWLKR 525

Query: 536 ---------TLRNEQNSYSSLQELISE-------LEQYPPTIKRAH-SANHNEVRIMTVH 578
                       NE   Y +   L          ++             + + VR+ TVH
Sbjct: 526 KGTKAEPTGAAANEATGYDTADGLGDTGKSLLGLIQTVALMSMLEGREEDPDAVRLSTVH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+       +                             
Sbjct: 586 ASKGLEYPHVFLVGVEEGIMPHRGGPDDEPIDD--------------------------- 618

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
              +  EE  RL+YV +TRA   L +         +++        + +   +D      
Sbjct: 619 ---ARIEEERRLMYVAITRAQRSLHLNWCKKRKRARETVVCEPSRFIPEMLLDDAPPPTP 675

Query: 699 KLTNSINKDEWIAYEWSTHHP 719
           +      KD   + +     P
Sbjct: 676 EEAPMSPKDRLASLKALLQKP 696


>gi|293607025|ref|ZP_06689369.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553]
 gi|292814622|gb|EFF73759.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553]
          Length = 1149

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 140/1001 (13%), Positives = 262/1001 (26%), Gaps = 138/1001 (13%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
               ++ E  + + + +       +    +  +  ++ G+    K    L          +
Sbjct: 215  LAEAIGEDLDALCEAMPYGWGEALCGPARLAATHLQDGDD-DNKLLALLDWTDDLPPDAQ 273

Query: 65   RFSLLSSF---FLTQKFTPQKNI-------ITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                  +     LT   + +K +             +      E          ++    
Sbjct: 274  VLDQWRAVAHLLLTGTGSLRKTVNKNLGFPAKCAHKEPFVAWLEAADGEAAWVRRLHAVR 333

Query: 115  NTYKMFKSTLASLTLAKYLN------AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            +      +      L   L       A           +DF ++       L   D    
Sbjct: 334  DIPAPHFTDAQWEVLGAQLMTLALAVAQLRLRFADKGEVDFIEIAQRAAAALGSADDPGE 393

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +  K+D  I H+LIDE QDTS  Q +++R+LT  +  G       R+LF VGD  QSIY 
Sbjct: 394  LLLKLDASIRHLLIDEFQDTSQTQLDLLRTLTLGWQAGDG-----RSLFLVGDPMQSIYR 448

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI-PENAQGL 287
            F  AE    L                   + L  +FRS A I+  V++ F+         
Sbjct: 449  FRKAEVGLFLEV-----ADIGVGELTPDFLNLTDNFRSQAGIVEWVNQSFANLLPKRSDA 503

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
            +  +       +                         +         S    + A   A 
Sbjct: 504  AAGAIAYSPSTAFHDALP-------------------EAAVRFHPAWSRAGGTPAEEQAE 544

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
             IA     ++    I   G K       + +LVR R                  I     
Sbjct: 545  DIA---VGLVRQALIDHKGAKHP-----VAILVRARSHLGN----LTRRLAQEGIRCRAV 592

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK------------ 455
            D   L     + DL+ L R +    D ++++ +L++P    +   + +            
Sbjct: 593  DLVPLALRPVVADLVQLVRALSHPADRMAWLSVLRAPYCGLTLTSLQRLFGDDHITPVPV 652

Query: 456  ------------------------ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
                                    +      T          +     + + V   + + 
Sbjct: 653  LLERALRMTPATAPAVVSSAPQGSLFDSAPATPDTPSAQALLSADEFERLRQVAAVLLDK 712

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
             + +       +   +     G   +         + L + +     +     ++L   I
Sbjct: 713  RNASGAMPFAAWVESLWRRLGGPALYAGLSVANDAESLFQLVERLAPHGAIDPAALDAGI 772

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            S L   P     A   +   V IMT+H +KGL+   V L               +    S
Sbjct: 773  SRLFAAPD----AADEDEGAVEIMTMHKSKGLQFETVILYGLHRAPR-GDQAPLVRFEQS 827

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                   P+        + I   L     +    E +RLLYV  TRA  +L +  H +  
Sbjct: 828  GGRVLFGPVKPRAEAEADPISRYLGAREARRASYEIDRLLYVAATRARKRLHLVGHVSID 887

Query: 672  NEKKS-NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
                         ++   +      +          D   A EW          E    +
Sbjct: 888  EASGQVKTPPSASLLGRLWPCLPTPQPPAQDQQAEPDAVDAPEWQGEPLRRVATEGLAQL 947

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
             +  +         +                     +     L +       G + H  L
Sbjct: 948  ARQSNVSISAGFGTAERG------------AWGDGSEHPAWQLEAGYDAA-IGTLAHAWL 994

Query: 791  QVI--------FTLPEHKRKNFITSYCTKNA--KLWPAKEYKNLLLSITRLLENPMMTTA 840
              I               R   +    T+            + +L ++   L +      
Sbjct: 995  ARIGQDGTHAWPAPALADRLPAMRRQLTRAGIPASQADDAAQAVLETLQATLADERGLWL 1054

Query: 841  MSC-DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE-----IE 894
            +S   +  E      +      + +   ID    ++    I +YKT    P E       
Sbjct: 1055 LSQSGARREWP----LIDAAGKVSV---IDLALSTEDGWLIVDYKTGRPHPGESPTAFAT 1107

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             +   H  QL  Y   +      +     L +        +
Sbjct: 1108 RMRQRHGEQLLRYCTQVTALD-GRLARAALYFPRARAWIDL 1147


>gi|167625835|ref|YP_001676129.1| ATP-dependent DNA helicase Rep [Shewanella halifaxensis HAW-EB4]
 gi|167355857|gb|ABZ78470.1| ATP-dependent DNA helicase Rep [Shewanella halifaxensis HAW-EB4]
          Length = 671

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/618 (16%), Positives = 211/618 (34%), Gaps = 123/618 (19%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIRDRFNTYKMFKSTLASLTL 129
           S F  Q        +TQ+   +  DL + L     +    +       K+ K       L
Sbjct: 106 SLFDDQDTFALLKELTQDELDEDKDLLKLLASTISNWKGDLVIPEQARKIAKDEQQ--QL 163

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L   Y +  K    LDF+DLI+    LL++ +    +R +    I ++L+DE QDT+
Sbjct: 164 FALLYQRYAQHMKAYNALDFDDLILLPTLLLRQNEE---VRTRWQTRIQYMLVDEYQDTN 220

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L  +                VGD+ QSIYS+ GA+P+ ++   +   +   
Sbjct: 221 TSQYEMVKLLVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPR--- 267

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RS+  IL   + + +   +    +  S           G+   V 
Sbjct: 268 -----LKLIKLEQNYRSSQRILRAANILIANNPHVYEKALFSE-------LAYGEPIRVL 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             ++    A R+   I+ MI    +       
Sbjct: 316 I----------------------------AANEEQEAERV---IAEMIRHKFVGRT---- 340

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D  +L R    + L+           +I    +          IKD+MA  R ++
Sbjct: 341 --SYGDYAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFGRAEIKDIMAYLRLVV 394

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKFQ 482
           + +DD +F+ ++  P        + ++      +  +++          +     +S   
Sbjct: 395 NPDDDNAFLRIVNLPKRGIGPATLERLGNFANMKQISMFAAIFEADLNHELPPAAMSSLY 454

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTL 537
              +++ E+   A+   P +    ++               ++     +  + E   +  
Sbjct: 455 QFGRFVVEMGDCAERGDPVEAVKQLIRKINYEDYLYENSTSAKAAEMRMKNISELYRWVT 514

Query: 538 RN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 E +   +L E+++ L       + +     ++V++MT+H +KGLE P VF+V  
Sbjct: 515 EMLEGDELDEGMTLPEVVTRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPYVFMVGA 574

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             ++  H+                                       +   +E  RL YV
Sbjct: 575 EERILPHQSSID-----------------------------------EDNVDEERRLAYV 599

Query: 654 GMTRASDQLIICKHSNTS 671
           G+TRA  +L         
Sbjct: 600 GITRAQKELWFVICRERR 617


>gi|303233093|ref|ZP_07319766.1| putative ATP-dependent DNA helicase PcrA [Atopobium vaginae
           PB189-T1-4]
 gi|302480678|gb|EFL43765.1| putative ATP-dependent DNA helicase PcrA [Atopobium vaginae
           PB189-T1-4]
          Length = 873

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 101/794 (12%), Positives = 221/794 (27%), Gaps = 191/794 (24%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + + + QV                 + ++ + L   +        
Sbjct: 86  GAGSGKTRVLTHRIAYIIQHEQVQPWRILAITFTNKAAKEMRERLEMLLSETMRGMWVCT 145

Query: 66  FSLLSSFFL---------TQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F  + S  L         T  F    +  ++ + K   D          +   +      
Sbjct: 146 FHAMCSRILREHADVLGYTSNFVVYDDSDSKRLVKTIMDDLNLDTKKLSINALRARISAA 205

Query: 111 RDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           ++   T    +        +  A  +         +   +DF+DL++NT  L  +     
Sbjct: 206 KNAAKTCDDLEREAQGSYVMEAAAKVYRELNSRLLRANAMDFDDLLLNTLTLFVQHPD-- 263

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +     Q   ++ +DE QDT+ +Q+ +   L +          +   L  VGD+ QSIY
Sbjct: 264 -VLASYQQRFLYVSVDEYQDTNGVQYALTNLLAK----------THHNLMVVGDDDQSIY 312

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           S+ GA+   +L  +    +          +++L  ++RSTA IL   + V    E+ +  
Sbjct: 313 SWRGADITNILSFRHDYPE--------AKVVKLEQNYRSTAHILHAANAVVKHNEHREEK 364

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              +         + G    V++++    + +                           R
Sbjct: 365 ELFT---------KAGSGERVEVFQASDERDEG--------------------------R 389

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            I   I  +              +  +DI V  R    + ++  +         +     
Sbjct: 390 WIGGEIEKLHDNG----------MSYQDIAVFYRTNAQSRILEDMF----LRAGVPYSIV 435

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETV 466
                 D   I+++MA  R +++  DD+S + ++ +P        + ++         ++
Sbjct: 436 GGTRFFDRAEIRNVMAYLRVVVNPADDVSLLRIINTPRRGIGTTTLQRLQAYAQSLQCSL 495

Query: 467 YEYIQKFANCGISKFQHVIKYIHEL-----IHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           +  I+     G          + +                +    I+ +    +   +  
Sbjct: 496 FAAIKDACLRGGVVAARATSQLQQFVDCVDQAQRMSGEFSEVIRAIIESTHMIEALEAEN 555

Query: 522 G------------------------NEVIDVLDEF------------------------- 532
                                     +  + L+                           
Sbjct: 556 TMEAQSRIENIQEFYSVAAEFDLTHEDAQETLESLQQLRDAGVIAEGELESVDAGSAESS 615

Query: 533 LNFTLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
           ++  L              + ++   L   +  L         +   +   + +MTVH A
Sbjct: 616 VDVALEAAPGTDAASAPASQNDTQVQLAAFMEWLALRSDLDTLSGETSS--ITMMTVHAA 673

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE  VVF+      +F H+                                      +
Sbjct: 674 KGLEFDVVFVAGMEDGIFPHRSF----------------------------------DTE 699

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            S  EE  RL YV +TRA  +L +   +                + +    D     +  
Sbjct: 700 DSNIEEERRLAYVAITRARKRLFLSYATTRHMFGSVQTNPKSRFLREIPDEDMHTTGVGS 759

Query: 701 TNSINKDEWIAYEW 714
                       + 
Sbjct: 760 EGFAGVGWEKRGDR 773


>gi|219852269|ref|YP_002466701.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
 gi|219546528|gb|ACL16978.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
          Length = 921

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 119/839 (14%), Positives = 245/839 (29%), Gaps = 160/839 (19%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y +  + +  +DF  +I +  + L++      +  +    + ++++DE QD + +Q 
Sbjct: 174 YRAYLDHLQADHYIDFTGMIAHYVEALEEDPA---LLARERGRVRYLIVDEYQDINTLQE 230

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+IR +            S   L  VGD+ Q IY + G+  + ++               
Sbjct: 231 ELIRLMVG----------STGNLSVVGDDDQCIYHWRGSNYENIISFGTRYP-------- 272

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             + + +  +FRST  I++   +V    E                         ++ W  
Sbjct: 273 DVTTVRIQQNFRSTPGIISAASRVIDRNELR-------------------LPKMMEPWP- 312

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                      + +  T +FD   +E +       I   I  ++G + I + G++R +  
Sbjct: 313 ----EGLGQTEEGDIATCFFDDEEEEVAG------IVGQIQALLGREYINNQGEERTLSY 362

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           +D+ VL+R      +             I  V      L +   +  +M    F+     
Sbjct: 363 RDMAVLMRS---VRVYARSLISALERAGIPFVVRGG-RLFERPEVVIVMQALAFL----- 413

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
              +   L+SP           +       E  Y  +        + F  ++  +   I 
Sbjct: 414 -GEYPYPLRSP-----------VPVHLPLLEEAYLALGYGEAADCALFLKLMTDLKREID 461

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELIS 552
            ++  S    F  ++ A  G +   + F       L          E      +  E+  
Sbjct: 462 RSESFSLQTLFHRVVQAMGGDR---TPFPEVWYYNLGNLSQLVSAFEHQYPLITTMEIHR 518

Query: 553 ELEQYPPTIKRAHSAN-------HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI-K 604
            LE       +             + V + T+H AKGL+ PVVF+    +  F      +
Sbjct: 519 FLEYIQEHAMKQAEEGGAGEELLPDAVTVTTLHKAKGLQFPVVFIPRLNTGEFPSDRPDR 578

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            +  +PS   D                             E+  RL YVG+TR+   L +
Sbjct: 579 AVWFVPSPLFDRDRYTTS---------------------LEDERRLFYVGITRSEKYLFL 617

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
             H   S +    + + +   +  +  D  V +        +    A   S   P     
Sbjct: 618 SGHRQRSGDLPPAEPSTF---FSEYPRDHVVDRFPCPAKGGETSHTATPISDRSPARI-- 672

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
                         +      P    +   Y  +P   +  G                G 
Sbjct: 673 --------ETSWSALRYYAHCPFDYKLRHLYGFDPMPREELG---------------FGR 709

Query: 785 IIHKLLQVIF------TLPEHKRKNFITSYCTKNAKLWPAKEYKN--LLLSITRLL--EN 834
            +H +L  +       T    +  + +  +           E     +     R +   +
Sbjct: 710 AVHSVLAAVHTQIVRGTFDPAEIPDLVDEHLLLRFAPAGTTERVQGIVARQTLRYVEQNS 769

Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEI 893
                           +    +    + +++G +D +       + + ++K      +  
Sbjct: 770 HDFARIAG--------IELPFSFAVGNGVVNGAMDLMLGDGDGGVELRDFK---LTEEGE 818

Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFIIPQNKLNKAFAEISTKI 951
                    QL +Y    +       +    IY      +  +       A AE  T +
Sbjct: 819 ASFRPDVERQLQVYALAARSL--GHEVHKATIYHFDTGSITEV--AVGPAALAEAQTAV 873


>gi|160888166|ref|ZP_02069169.1| hypothetical protein BACUNI_00574 [Bacteroides uniformis ATCC 8492]
 gi|156862301|gb|EDO55732.1| hypothetical protein BACUNI_00574 [Bacteroides uniformis ATCC 8492]
          Length = 1099

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 131/858 (15%), Positives = 271/858 (31%), Gaps = 98/858 (11%)

Query: 100  LKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L +  +     R+R  N+ ++    L  L L  +++       +++       L+ +TN 
Sbjct: 318  LLQEAERMRPQRNRTLNSCRLSLQHLNKLQLLNHIDEEVRTLNREHNRF----LLSDTNA 373

Query: 159  LLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            LL    +   S+++  KI   I +++IDE QDTS +QW+  R L  +             
Sbjct: 374  LLHKLVREGDSSFVFEKIGANIRNVMIDEFQDTSRMQWDNFRLLLLEGLS------QGAD 427

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
               VGD KQSIY +   +   +        K          +  L  + RS  +I+   +
Sbjct: 428  SLIVGDVKQSIYRWRNGDWGILNSLGN---KELNLNSFPVRVETLKTNRRSETNIIRFNN 484

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +VF+   +       +         +      V        Q   +         ++ + 
Sbjct: 485  QVFTAAIDYLNALHLNELKEDCLPLKRAYADVV--------QESPKSTEYGYVKATFLEP 536

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + +        +   +  ++             +   DI +LVRK K+ P I      
Sbjct: 537  DDEHNYTEQTLLALGEEVQRLLEEG----------VTLNDITILVRKNKNIPPIADYF-- 584

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
               +  +SVV ++ F L   LAI  LM   R + + E+ ++   ++++     + D+   
Sbjct: 585  -DKELHLSVVSDEAFRLDASLAICMLMDALRCLSNPENKIAEAALMENYKLQMTNDEQSG 643

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                    ET                              +    ++    +        
Sbjct: 644  FIIATPLPETFTSR----------------------RETLRLMPLYELLEELFSIFG--- 678

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                    +    L  F +      Q++ S L   I   ++     K   S   + +RI 
Sbjct: 679  ---MSRIEKQDAYLFSFFDAVTEYLQSNSSELDSFIRYWDET-LCSKTIPSGEMDGIRIF 734

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP--SLNDDPGIPIWIPQSKSRNNIVS 633
            ++H +KGLE   V +     ++ +  + + +  +P     +   +      +    +I  
Sbjct: 735  SIHKSKGLEFHTVLIPFCDWKLENETNNQLVWCVPPEEPYNAISLVPVNYSTTMAESIYR 794

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                H +     +   LLYV  TRA   LI+                    +        
Sbjct: 795  QDYLHERLQLWVDNLNLLYVAFTRAGKNLILWSRKEQKGTMSELLANTLPRIAKDGAGSW 854

Query: 694  RVKKIKLT-NSINKDEWIAYEWSTHHPENTPLERE---------ETIKQLMDEQKIPKKL 743
              +        I        +    +P +   +           E   ++ ++Q + +  
Sbjct: 855  DEEAAIYENGRICPSSVPVSQHDADNPADDEAKPLCCERKPLYCERKPEVYEQQPVNRLS 914

Query: 744  FSPIKNDIN-----EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
              P+K  ++            S         ++   S  +  NRG ++H L   I T  E
Sbjct: 915  QKPVKLPVHMESMLHDIEFRQSNRSADFIAGVDEAESSWRFINRGRLLHTLFSAIET--E 972

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
                N I+    +        E + +     R    P +    S      +     I   
Sbjct: 973  EDIDNAISQLVFEGVIGRSETE-EEIRNLTQRAFSLPQVKDWYSGTWQ--LFNECDIIWQ 1029

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS-YPN 917
            +   + + R D++ +  + I + ++K               +  Q+  Y ++L    Y  
Sbjct: 1030 ENGELRTRRPDRVMMRGEEIVVVDFKFGKPN--------KKYNKQVQGYMQLLVRMGYVA 1081

Query: 918  KSLVCLLIYVSEPKVFII 935
            +++   L YV E  +  +
Sbjct: 1082 ENIRGYLWYVEENNIEPV 1099


>gi|152987564|ref|YP_001351386.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PA7]
 gi|150962722|gb|ABR84747.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PA7]
          Length = 706

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/634 (14%), Positives = 205/634 (32%), Gaps = 125/634 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  +        A  +  HY+   +    +DF
Sbjct: 166 DDGVDEIKNYIGAWKNDLILPEEALEKARNPRE-----QTAAIVYLHYQRTLRAYNAVDF 220

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      I  K    + ++L+DE QDT+  Q+ +++ L +D       
Sbjct: 221 DDLILQPVKLFQEHPD---ILQKWQNRVRYMLVDEYQDTNASQYLLVKLLVKD------- 270

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                    VGD+ QSIY++ GA P+ +++ K               ++ L  ++RST+ 
Sbjct: 271 ---RAQFTVVGDDDQSIYAWRGARPENLMQLKEDFP--------SLKVVMLEQNYRSTSR 319

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + +   +       S           G    V                     
Sbjct: 320 ILKCANVLIANNPHVFEKQLWSEMG-------HGDPIRVIRCR----------------- 355

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                      +    A RIA  I  +           +      +  +L R      L+
Sbjct: 356 -----------NEDAEAERIAMEILTLH---------LRTERPYSEFAILYRGNHQAKLM 395

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     ++I    +          +KDLM+  R +++ +DD +F+ ++  P     
Sbjct: 396 ELKLQ----HHQIPYRLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVINVPRREIG 451

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    + Q   +++  +        P  
Sbjct: 452 SATLEKLGNYATQRNISMYAACDEMGLAEHLDSRFHERLQRFKRWMDGIRRQCAENEPIA 511

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              ++      +  +   +      L  ++    ++++ I++L
Sbjct: 512 VLRSMVMDIDYENWLRQNASSDKVAEFRMSNVWFLIEALKNTLERDEEGDMTIEQAIAKL 571

Query: 555 EQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                   ++        V++MT+H +KGLE P VF++    ++  H             
Sbjct: 572 VLRDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 618

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L +   +     
Sbjct: 619 ----------------------RSSIEADTVEEERRLAYVGITRARQNLAMTFAAKRKQY 656

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            +    +    + +    D   + ++      K 
Sbjct: 657 GEIIDCSPSRFLDELPPEDLEWEGLEDAPQEVKA 690


>gi|85057395|ref|YP_456311.1| UvrD helicase [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789500|gb|ABC65232.1| UvrD helicase [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 761

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/557 (17%), Positives = 180/557 (32%), Gaps = 132/557 (23%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y+   + N ++DF+DLI+ T+ LL++    A +R    Q+  ++L+DE QDT   Q++++
Sbjct: 206 YQIFLQNNNLVDFDDLILYTHQLLQEN---ANVRVFYQQKFQYLLVDEFQDTDFFQYQIL 262

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L ++           + +F VGD  Q+IYSF GA  +                  K  
Sbjct: 263 TLLAKE----------HQNIFVVGDPDQNIYSFRGARFENSQLFLNKF---------KPK 303

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           I  L  ++RS+ +IL   + +    +             +         G   + +    
Sbjct: 304 IAFLEENYRSSKNILDKANLLIKYNK---------AHLFKKNLKSTKSGGEPVICKFFAD 354

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
             +                           R IA TI N++                +D 
Sbjct: 355 YKEET-------------------------RYIAKTIQNLVLQGV---------YSYQDF 380

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R       +            I               +KD +A   FI +   D +
Sbjct: 381 TILYRTNILGRPLEEKFLA----NNIPYQVFGGASFYQSKLVKDFLAYLNFIANPSQDFN 436

Query: 437 FVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS-----KFQHVIKYIHE 490
           F  ++ +P        +  +    + +  T+++ ++      I      K   + K I  
Sbjct: 437 FKRIINTPKRGIGTTSLLHLEKLAQEKKITLFDTLKYLDQTPIQPNAKTKLNELKKLITN 496

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----------VLDEFLNFTLRN 539
           L       S  D  + I+     + ++  +                   ++E  +  ++ 
Sbjct: 497 LRQKLINDS-FDCLSDIITYIDEKIEYCRKNDETCKMQSIKDSDSDLYYIEELKSVFMQA 555

Query: 540 EQNSYSSLQE-LISELEQYPP--TIKRAHSANH------NEVRIMTVHTAKGLESPVVFL 590
           E+N   S+ E L   L+Q             +       + V++ T+H  KGLE  VVF+
Sbjct: 556 EKNLEGSIFEKLTQLLDQISLYNETNEQTEQDSKNPSKNDRVKLSTIHKVKGLEFRVVFI 615

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F                                         +KS  EE  RL
Sbjct: 616 TAFEDIFFDCN------------------------------------QKEKSDLEESRRL 639

Query: 651 LYVGMTRASDQLIICKH 667
            YV +TRA ++L +   
Sbjct: 640 AYVAVTRAEEKLFLTGA 656


>gi|42561294|ref|NP_975745.1| ATP-dependent DNA helicase [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492792|emb|CAE77387.1| ATP-dependent DNA helicase [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|301321313|gb|ADK69956.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 722

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 111/602 (18%), Positives = 200/602 (33%), Gaps = 128/602 (21%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K    ++I  K  + KE+L    +         N    +    A       +   Y
Sbjct: 135 SENDKKTFDKKILYKIKEWKEELVDPDEAI------LNANSTYDRNSAI------IYKLY 182

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           +E   KN  +DF+DL I    L K       I  K     +++L+DE QDT+ IQ+ +I+
Sbjct: 183 QETLLKNNSIDFDDLQIYVYLLFKNH---QEILNKWKNSYDYVLVDEFQDTNDIQFNLIK 239

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            LT           +   L AVGD  Q+IYS+ G +   +L   +      +        
Sbjct: 240 FLT----------INTNHLTAVGDPDQTIYSWRGTKLDIILNFNKTYSNAIS-------- 281

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  ++RST  IL + +      +  +     +      +                   
Sbjct: 282 IVLNQNYRSTKQILDISNSFIKNNKFREHKEIYTNNKTGKKVV----------------- 324

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                             L + +S +  A  +++ I  +I                KDI 
Sbjct: 325 ------------------LKECNSKTSEASYVSFKIKELIKQG----------YHYKDIF 356

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +L R    +            + KI           +   IKD MA  + I S +DDLS 
Sbjct: 357 ILYRMNAWSQEFEKEL----INRKIPFQLIGGIKFRERKVIKDAMAFLKMI-SIKDDLSS 411

Query: 438 VCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
             +L S +       I K I T      ++++ I       +      +  + E+   A 
Sbjct: 412 QRVL-SLIPKIGNITIEKIINTANLNHISIFDLITNKDKTLLQSITKNLDELIEVFKTAH 470

Query: 497 FC-----SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS----SL 547
                  +  +    +L       +   +   + ++ ++   +   R +++         
Sbjct: 471 QLYLDNTNIEEILKYLLIQSGYGNKLKVKKEQDDLENINALYDQLKRFDEDFDPKYYSEE 530

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +LI+ L++   T     +   ++V ++TVH AKGLE+ VVF+      +F  +      
Sbjct: 531 NKLIAFLQEEALTSDIDEAQQIDKVSLLTVHAAKGLENKVVFITGLNQGIFPTR------ 584

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                       +    +   EE  R LYV +TRA ++L +   
Sbjct: 585 ----------------------------LSENNQKELEEERRALYVALTRAKEELFLTYV 616

Query: 668 SN 669
             
Sbjct: 617 KG 618


>gi|323143043|ref|ZP_08077748.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
 gi|322417184|gb|EFY07813.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
          Length = 688

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 108/629 (17%), Positives = 197/629 (31%), Gaps = 148/629 (23%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K  +  +I K  P +   L     E   +R              +  +       YE+  
Sbjct: 127 KEELNVDIKKYEPGMIADLISDFKE-NGLRFAAVASLAENINQKADPVLLKAYESYEKTC 185

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           ++  ++DF +LI+   +LL+       +R  +      IL+DE QDT+ +Q+++++ L  
Sbjct: 186 QRENLVDFSELILRVVELLQNN---VGVRELLQHRFKQILVDEFQDTNALQFKLLKLLVG 242

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                         + AVGD+ QSIY + GA+   + +                + I+L 
Sbjct: 243 PDT----------DIMAVGDDDQSIYGWRGADSGNMQKFCDEF--------APVTKIKLI 284

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS  +IL + + + +       L E             G+ G V++           
Sbjct: 285 ENYRSRQNILDLANVLIAHNSERLVLKELHGN--------RGRGGPVEIRSF-------- 328

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                             ++A   A  I   I  +              +Q K+I VL R
Sbjct: 329 ------------------ANAHAEAEGIRRIIRILKNNG----------VQYKEIAVLYR 360

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             + + LI         +Y I  V        D   I + +A  + I++Q DD S + ++
Sbjct: 361 NNRQSSLIETEL----GNYGIPYVVLGGMRFYDREEILNALAYAKVIINQNDDTSLLRII 416

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGI--------------SKFQHVIK 486
             P        I ++    +    ++Y  +++                     K      
Sbjct: 417 NVPSRKIGPAVIRELSAVAKERGISLYAALKEVYKYVEIDKKTDNKALVKLAKKISEFYS 476

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFI--------SRFGNEVIDVLDEFLNFTLR 538
            I  L          DF   ++     R+ +             N   + L E +N    
Sbjct: 477 LIENLKKQKDN-DLQDFMKNLIEQTGLREYYQLKDEKEQNKFKDNMREENLLELVNNAHI 535

Query: 539 N-------------EQNSYSSLQELISELEQYPPTIKRA----HSANHNEVRIMTVHTAK 581
                         E+   S L   IS +                 +   VR+MT+H+AK
Sbjct: 536 FNKSYERMFADVNEEEAQISPLTAFISNITLIGSGEMDEKGSTDEIDEGAVRLMTIHSAK 595

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE  VV +      +                                           +
Sbjct: 596 GLEFNVVIVAGMEKNILPSVRS-------------------------------------E 618

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNT 670
             ++E  RL YV +TRA ++L++      
Sbjct: 619 KNKDEERRLAYVAITRAKEKLVLTYAMKR 647


>gi|170698717|ref|ZP_02889782.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
 gi|171321304|ref|ZP_02910265.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
 gi|170136342|gb|EDT04605.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10]
 gi|171093411|gb|EDT38595.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
          Length = 695

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/577 (17%), Positives = 186/577 (32%), Gaps = 128/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKQLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 466 MFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E   + +   L          ++             + + VR+ TVH 
Sbjct: 526 KGTKPETEAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKDEDPDAVRLSTVHA 585

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+                           +  +       
Sbjct: 586 SKGLEYPHVFLVGVEEGIMPHR----------------------GGSEDDGPIDS----- 618

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 619 --ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|146313639|ref|YP_001178713.1| ATP-dependent DNA helicase Rep [Enterobacter sp. 638]
 gi|145320515|gb|ABP62662.1| ATP-dependent DNA helicase Rep [Enterobacter sp. 638]
          Length = 673

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/640 (15%), Positives = 210/640 (32%), Gaps = 123/640 (19%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    +          K       +  +  
Sbjct: 111 TDQVALLKELTEGRIEDDKLILQQLISTISNWKNDLMTPSQAAASAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           + Y++  K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 SLYDDHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +++L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVVKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+A           + ++        K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERVA---------GELIAHHFVNKTAYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +   +        +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        ++++               G        ++
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSMFTASFDMGLSQSLTGRGYESLTRFTQW 459

Query: 488 IHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +A+        D    I       +   S    E  +  +++   +        
Sbjct: 460 LGEIQRLAEREPVSAVRDLIHGINYESWLYETSASPKAAEMRMKNVNQLFTWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V+L+     +  
Sbjct: 520 EIDEPMTLTQVVTRFTLRDMMERGESDEETDQVQLMTLHASKGLEFPYVYLIGMEEGLLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 604

Query: 660 DQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
            +L   +CK      E    + + + +           ++
Sbjct: 605 KELTFTLCKERRQYGEMVRPEPSRFLLELPQDDLQWEQER 644


>gi|115350193|ref|YP_772032.1| UvrD/REP helicase [Burkholderia ambifaria AMMD]
 gi|115280181|gb|ABI85698.1| UvrD/REP helicase [Burkholderia ambifaria AMMD]
          Length = 695

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/577 (17%), Positives = 186/577 (32%), Gaps = 128/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKQLAGQRAA----------FTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 466 MFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E   + +   L          ++             + + VR+ TVH 
Sbjct: 526 KGTKPETEAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKDEDPDAVRLSTVHA 585

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+                           +  +       
Sbjct: 586 SKGLEYPHVFLVGVEEGIMPHR----------------------GGSEDDGPIDS----- 618

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 619 --ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|149375448|ref|ZP_01893218.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893]
 gi|149360153|gb|EDM48607.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893]
          Length = 1234

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 131/1048 (12%), Positives = 282/1048 (26%), Gaps = 154/1048 (14%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT------------ILKKAQTLQ 54
            L+  E+ + + +                +   +                  + K  + L+
Sbjct: 225  LAAAEAAKRLREVKLQALKAPWPAWCDELEELLAETTKRKPKPLHGTTKNSLQKAVEHLR 284

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            + + T    E    LSS       T +     ++   +          +  E        
Sbjct: 285  EWA-TTDAAEPHEFLSSKRTKGFDTLEAEAFAEKWTGEDEPPHHPAMDAITELKPALKTM 343

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
               K      A    A ++    +  K++   + F+DL+   +  L        +   I 
Sbjct: 344  PVAKADILNHA----ACWIARRLDSEKQRLASMGFDDLLTRLDAALGGPQ-GERLAGTIR 398

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            ++    +IDE QDT  +Q+ +   +         ++    +L  +GD KQ+IY F GA+ 
Sbjct: 399  RQFPVAMIDEFQDTDPVQYRIFDRIYR-----VASNDQDTSLLMIGDPKQAIYGFRGADI 453

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI-----PENAQGLSE 289
               L  +R    R            L  ++RS   ++  V++VFS      PE A     
Sbjct: 454  YTYLDARRAVSSR---------TYTLGTNYRSAVAMVDGVNRVFSQADASLPEGAFLFRA 504

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                 +              L         +      E   +        + A       
Sbjct: 505  GDDNPLPFSPVEAKGTSQQWLVNGQPLPPLTFWTLSDERPIAKETGREAMAEACAAEIAR 564

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
               +        +        ++ + + VLV KR +      + + L      SV  +DR
Sbjct: 565  LLNLGQSGDAGFVAEGTPFEPVRPEHMAVLVNKRDEA---NAVRQSLGARGVRSVYLSDR 621

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +   +   +++   +              L +P  + +  ++ ++ +         E 
Sbjct: 622  NSVLQSVQSVEMLQWLQACAEPGQLSLIRAALATPTMSLAYQELDRLFSD--------EN 673

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                       ++ + +    L  + +    +D    +L    G +             +
Sbjct: 674  ALDREINRFQGYRELWQQQGVLPMLRRLLMDYDVPAKLLSGPDGERGLTDIL------HI 727

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA---HSANHNEVRIMTVHTAKGLESP 586
             E L    +     ++ +      L+      +       ++   V+++TVH +KGLE P
Sbjct: 728  AELLQQDSQQLDGEHALIHHYTEMLQDSDDEDEHRTMRLESDAGLVKVVTVHKSKGLEYP 787

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VFL       F  +   +  I    ++        P          D +    +    E
Sbjct: 788  LVFLPFATE--FREEKPNQAFIKYHDDEGRLQISLEPD--------EDTLARADRERLGE 837

Query: 647  YNRLLYVGMTRASDQLII----------CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              R LYV +TR+     +              +      S++ T       S   DE   
Sbjct: 838  DIRKLYVALTRSRHATWVGASGIKGWRQSGLGHLIGRSASDEDTDLMPFLQSVATDEPAI 897

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI--------- 747
             +        D +   E         P+        +     I                 
Sbjct: 898  DVTPMPEAGDDVYAGDEEPKLGNALEPVREARENWWIASYSAITYGARGGYGNDFVPASE 957

Query: 748  -KNDINEPYILNPSTIDTKGKTNLESL-------LSDNQTFNRGLIIHKLLQVIFTL--- 796
                 N      P   DT      +          +  +    G  +H +L+        
Sbjct: 958  DAEQENLRDEDEPVVADTLAAMIPDWQGPQPVNQHAFPKGSGPGTFLHDILEWCAREGFH 1017

Query: 797  ----PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL--------------LEN--PM 836
                        +   C        A   K  + ++  +              L+   P 
Sbjct: 1018 KVVNTPDDLHELLERRCKLRNWSDWADTLKTWIYTLITMDIPLPGSRTCSLAGLDTFRPE 1077

Query: 837  MTTAMSCDSYSEVS---VSGKINCPKKDI----------IISGRIDQISISQQNIFIFEY 883
            +         + ++   +  +                  ++ G ID +   +   ++ +Y
Sbjct: 1078 LEFWFESHDVNTLAMDRLVRRHTLGGDPRPEAHQATFNGMLKGFIDLVFEHEGRYYVLDY 1137

Query: 884  KTHHHVPQEIEHIP---------YTHIAQLSIYEKILKDS---------YPNKSLVCLLI 925
            K++     +  +IP           +  Q  IY   L            Y +     + +
Sbjct: 1138 KSNFLGEDDQAYIPGVMKAKILEKRYDLQYVIYLLALHRLLKARLPDYDYDSHIGGAVYL 1197

Query: 926  YVSE------PKVFIIPQNKLNKAFAEI 947
            ++              P   L +    +
Sbjct: 1198 FLRGCDAPGAGAFTERPDRALIEELDRL 1225


>gi|62182388|ref|YP_218805.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62130021|gb|AAX67724.1| rep helicase, a single-stranded DNA dependent ATPase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716881|gb|EFZ08452.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 707

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 99/617 (16%), Positives = 203/617 (32%), Gaps = 119/617 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +  +    Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QD
Sbjct: 195 RIFAHCYGLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQD 251

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L                   VGD+ QSIYS+ GA P+ ++   +     
Sbjct: 252 TNTSQYELVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA- 300

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +       S                
Sbjct: 301 -------LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS---------------- 337

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                              E        +   ++    A R+         T  + ++  
Sbjct: 338 -------------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHF 369

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q KD  +L R    + +            +I    +          IKDL+A  R 
Sbjct: 370 VNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRV 425

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISK 480
           + + +DD +F+ ++ +P        + K+        ++++         QK    G   
Sbjct: 426 LTNPDDDSAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDS 485

Query: 481 FQHVIKYIHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
                 ++ E+  +A+        D    I       +   S    E  +  +++  ++ 
Sbjct: 486 LTRFTHWLGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWM 545

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E +   +L ++++         +       ++V++MT+H +KGLE P V++V 
Sbjct: 546 TEMLEGNELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVG 605

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                  H+                                       +   EE  RL Y
Sbjct: 606 MEEGFLPHQSSID-----------------------------------EDNIEEERRLAY 630

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA  +L            +  +      + +   +D   ++ +   S  +      
Sbjct: 631 VGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQ 690

Query: 713 EWSTHHPENTPLEREET 729
               +       +R ++
Sbjct: 691 SHLANLKAMMAAKRAKS 707


>gi|149177805|ref|ZP_01856404.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
 gi|148843295|gb|EDL57659.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
          Length = 657

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 98/584 (16%), Positives = 190/584 (32%), Gaps = 119/584 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           LA      Y+   + +  +DF+DL++ TN L         +  ++  + +++ IDE QDT
Sbjct: 176 LAAMAYRKYQTKLRSSGAVDFDDLLMLTNQLFSDHPE---VLERVQAKFDYVQIDEYQDT 232

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +L Q+ +IR+L +              L  VGD+ QSIY + GAE K +L  ++      
Sbjct: 233 NLSQFSLIRALVK----------PHHNLCVVGDDDQSIYGWRGAEVKHILGFQQQFP--- 279

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   ++ L  ++R T  I+ + +++ +   +             H  +       V
Sbjct: 280 -----GAKVVRLENNYRCTDKIIELANRLVAHNRDRHKK---------HLIAHKKMGSPV 325

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +  E      +                          A +I   I  +            
Sbjct: 326 RFLELADELTE--------------------------AEKIIGEIRYLHEAQ-------- 351

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             +  +D  +L R  +   +     R       +           D   I+DL+A  + +
Sbjct: 352 -DVPLRDFAILFRTNEQPRVFETELR----RTNVRYQLIGSQSFFDRREIRDLLAYLKTL 406

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-------KF 481
              +D+LS + ++ +P        + K+  Q  +    +  +   A              
Sbjct: 407 AFPQDELSMLRIINTPTRGIGSSTVEKLVNQSVKAGNQFWEMVASAQQTNDLSARASTAL 466

Query: 482 QHVIKYIHELIHIAQFCS------PHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLN 534
                 +       +          HD    I    + ++Q+ +    +    VL++F+ 
Sbjct: 467 NGFHDLLKRYRSRLEQSPRDLSRIMHDLIKEIDYESEIKKQYKTSEQQQARIVVLEQFIE 526

Query: 535 FTLRNEQN-SYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLV 591
                 +  S  S    + E                  + V++MT+H+AKGLE P V+LV
Sbjct: 527 SINEYCRRTSDPSPIGFLEETALGDRDDLNEKEDQLAQDAVKLMTLHSAKGLEFPRVYLV 586

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  HK                                        S   E  R+ 
Sbjct: 587 GMEEGLLPHKRSV---------------------------------EGTDSEIAEERRIA 613

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           YVG+TRA D L + + +  +   K         +++  + D+  
Sbjct: 614 YVGITRAQDYLTLSRAATRTKWGKKQPTLPSRFLFEMRNTDDEE 657


>gi|56476966|ref|YP_158555.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1]
 gi|56313009|emb|CAI07654.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1]
          Length = 1229

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 135/976 (13%), Positives = 281/976 (28%), Gaps = 131/976 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             LW        D        +   +      A   +  +      +  + L      +  
Sbjct: 238  ALWHGNGRDARDALLAGLPGLSATSYKADSVALAAKSWTSWLAGGDPLAPL-DVQGGKFA 296

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
                  + + + K     +     +    + +RD                  +  +    
Sbjct: 297  LFSAMRLNECVKKHCSAPQHPFFDAAARVLALRDEVIAALDAARLALLRRFLETGSTRLR 356

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            E K++   + F+D++ N ++ L   D + W+   + Q     LIDE QDT  +Q+E+ RS
Sbjct: 357  ETKRERRRIAFDDILFNVHEALAGAD-NPWLAAALHQRYPVALIDEFQDTDPLQFEIFRS 415

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +         T      LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 416  IYA-------TGGRHGGLFLVGDPKQAIYSFRNADLHTYLHARSE----------ADTRY 458

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  + RS   ++   + +F+    A  L   +  T+          G       V S  
Sbjct: 459  TLSHNQRSVGGLIDACNALFTANPAAFVLDGLAYETVS--------EGAKPRQRFVDSSA 510

Query: 319  DSQCNPQQESWTSYFDS---LPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAK 374
             +     +  W +         + +  +  A   A  I  ++G           R +   
Sbjct: 511  AADPASLRVWWIAPDADGVLPLRAAVVARAAAATAAEIVRLVGEGAAGHITIGPRALAPG 570

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            DI VLV+       +      L     +  V   +  +      ++L  +   I      
Sbjct: 571  DIAVLVKSHSQGARMREALAAL----GVGSVELSQQSVFHSPDAEELERVLVAIAEPAHL 626

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                  L +    F    +  +     E   V     +     +++   V   +   I  
Sbjct: 627  PLLSAALATAPMGFDAAALDALAADEAELLRVIARFTELREVWLARGLGV--MLRRWIVQ 684

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                        +L    G ++  +         L E L+    +  +  + L+   +  
Sbjct: 685  ------EGINARLLARDDGERRLTNLL------HLAECLHEAAADHPSPDALLRWFATRR 732

Query: 555  EQY--PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
             +       +    ++ N V+I+T+H +KGLE  VVF        F  +       +   
Sbjct: 733  REAGASEATQVRLESDRNLVQIVTIHRSKGLEYGVVFCPFLWDG-FPGRGDDGEGCVYHD 791

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNT 670
             D   +  + P ++  +++       +++    E+ RL+YV MTRA  +  +    +   
Sbjct: 792  ADGGLLLDFRPSARDDDDV----KAVMRRERDAEFLRLIYVAMTRAVYRCYLVAGCYLKK 847

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE----WIAYEWSTHHPENTPLER 726
            + +  S   +   ++              L + +  D+    W                 
Sbjct: 848  NGKTASPTESTRSLLNWLVAGAGTSHAEWLRHKLTTDDIEAAWARLLERAEPDLAIVNLP 907

Query: 727  EETIKQLMDEQKIPKKLF--SPIKNDINEPYILNPSTIDT-------------------- 764
                 +L   +     L    P     +   I + S +                      
Sbjct: 908  AGGSARLASAEPAADALHVLPPPVRLPSAWRIGSFSALSHGAGHEAAAQDHDARALLVAP 967

Query: 765  ---------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
                           + +L   +    G  IH + + +       R   I +  T++ + 
Sbjct: 968  IDGATSIAPAAAPGDDDILFFPRGPTAGDCIHAVFERLDFPASASRTPAIAAALTEHPQR 1027

Query: 816  WP--AKEYKNLLLSITRLLENPM-----MTTAMSCDSYSEVSVSGKINCPKKDII----- 863
             P  A   + L   +  +L  P+     +          E+           + +     
Sbjct: 1028 APGGAPLARMLERLVEDVLATPLPGGIVLGRLDCRRKLVELGFHLPAPRLSAEALNDWLA 1087

Query: 864  -----------------ISGRIDQISISQQNIFIFEYKTHHH-------VPQEIEHI--P 897
                             + G ID +       ++ ++K++H         P  +E     
Sbjct: 1088 RAGYHVPRLAFGALAGYLKGFIDLVFEHDGRFYVLDWKSNHLGFTPEDYAPARLEEAMRA 1147

Query: 898  YTHIAQLSIYEKILKD 913
            + +  Q  +Y   L  
Sbjct: 1148 HGYHLQHLLYAVALHR 1163


>gi|261495059|ref|ZP_05991526.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
            OVINE]
 gi|261309301|gb|EEY10537.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
            OVINE]
          Length = 1174

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 129/875 (14%), Positives = 251/875 (28%), Gaps = 128/875 (14%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
            L K+Q      ++RF            L   K   A Y   K+ +    F+DL+   N  
Sbjct: 314  LAKNQAFLTAYKERFENSLSAMLQYQFLIALKAKLAEY---KQSHPQRSFDDLLTMLNQA 370

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            LK       +  KI       +IDE QDT L Q+E+   +           ++      +
Sbjct: 371  LKNLHTGEALAQKIRAMYPFAMIDEFQDTDLTQYEIFSQIF-------MAENAENGFIMI 423

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD KQSIY F GA+    LR  +          Q      L  ++RS  +++  V+ +FS
Sbjct: 424  GDPKQSIYKFRGADIFTYLRAAK----------QADEQFTLGKNWRSLPEVVQAVNNLFS 473

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ- 338
               +      +                 +            Q   +Q  +  Y     + 
Sbjct: 474  FANDNSPFLYED----------------IGFHPVEADSQKGQLVSEQGHFVGYITENSKL 517

Query: 339  ESSASILARRIAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            +  A + A +I   +  M          G+ +   AKDI +LVRK      I    + L 
Sbjct: 518  DDLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQAKRIK---KALA 574

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                 SV   +   +       +L  L +  L+     + +  L S L+  +  +I    
Sbjct: 575  KRNIKSVYLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWGLTAAEI---- 630

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
             +  E E +++          + ++        ++ +             L   +   + 
Sbjct: 631  HRYKENEQLWDLKVNQFVEYSNIWKE-----QGVLPMLHKIYLEQGIIERLKGLENADRL 685

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIM 575
            I+         L E L  T +  ++    L+    ++         +    +    ++I+
Sbjct: 686  ITDLL-----HLTEILQETSQALESEAELLRWYEKQVNSPDFNDEQQLRLESEEELIKIV 740

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGL+ P+V+L     +              S                      + 
Sbjct: 741  TIHGSKGLQYPIVWLPFVSQKSEGDTQTALSLYRNSQGALDWCL-----------GSEEA 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY--------D 687
               L+     E  RLLYV +TRA  QL +      S     +       +          
Sbjct: 790  SFSLQYEAYAEDLRLLYVALTRAESQLNLVLPKEISGWSPLHYLLADGEIPTGKVPVSDY 849

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                      +++   +    W   + S  +   T       + Q+     +  +     
Sbjct: 850  FSQKRIAANLVEVAGELPFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFS 909

Query: 748  KNDINEPYILNPS--------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            +        L                 +T   S          G ++H   +      + 
Sbjct: 910  EGKSERVMDLAQDRDVHIETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQI 969

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSG 853
             R+                +  +   L   R+L  P+      +         +E     
Sbjct: 970  DREAVAKVC---EQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYL 1026

Query: 854  KINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKT-- 885
            ++   K                           +  + G +D I   ++  ++ +YK+  
Sbjct: 1027 RLKNDKALHQLNALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNF 1086

Query: 886  -HHHVPQEIEHI------PYTHIAQLSIYEKILKD 913
              +      +           +  Q  +Y   L  
Sbjct: 1087 LGYLPQNYAKEHIQREMGRQRYDLQYLLYTLALHR 1121


>gi|172059215|ref|YP_001806867.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
 gi|171991732|gb|ACB62651.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
          Length = 695

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 100/577 (17%), Positives = 186/577 (32%), Gaps = 128/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKQLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 466 MFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E   + +   L          ++             + + VR+ TVH 
Sbjct: 526 KGTKPETEAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKDEDPDAVRLSTVHA 585

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+                           +  +       
Sbjct: 586 SKGLEYPHVFLVGVEEGIMPHR----------------------GGSEDDGPIDS----- 618

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 619 --ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|270297067|ref|ZP_06203266.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273054|gb|EFA18917.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1112

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 130/858 (15%), Positives = 270/858 (31%), Gaps = 98/858 (11%)

Query: 100  LKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L +  +     R+R  N+ ++    L  L L  +++       +++       L+ +TN 
Sbjct: 331  LLQEAERMRPQRNRTLNSCRLSLQHLNKLQLLNHIDEEVRTLNREHNRF----LLSDTNA 386

Query: 159  LLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            LL    +   S+++  KI   I +++IDE QDTS +QW+  R L  +             
Sbjct: 387  LLHKLVREGDSSFVFEKIGANIRNVMIDEFQDTSRMQWDNFRLLLLEGLS------QGAD 440

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
               VGD KQSIY +   +   +        K          +  L  + RS  +I+   +
Sbjct: 441  SLIVGDVKQSIYRWRNGDWGILNSLGN---KELNLNSFPVRVETLKTNRRSETNIIRFNN 497

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +VF+   +       +         +      V        Q   +         ++ + 
Sbjct: 498  QVFTAAIDYLNALHLNELKEDCLPLKRAYADVV--------QESPKSTEYGYVKATFLEP 549

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + +        +   +  ++             +   DI +LVRK K+ P I      
Sbjct: 550  DDEHNYTEQTLLALGEEVQRLLEEG----------VTLNDITILVRKNKNIPPIADYF-- 597

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
               +  +SVV ++ F L   LAI  LM   R + + E+ ++   ++++     + D+   
Sbjct: 598  -DKELHLSVVSDEAFRLDASLAICMLMDALRCLSNPENKIAEAALMENYKLQMTNDEQSG 656

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                    ET                              +    ++    +        
Sbjct: 657  FIIATPLPETFTSR----------------------RETLRLMPLYELLEELFSIFG--- 691

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                    +    L  F +      Q++ S L   I   ++     K   S   N +RI+
Sbjct: 692  ---MSRIEKQDAYLFSFFDAVTEYLQSNSSELASFIRYWDET-LCSKTIPSGEMNGIRIL 747

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP--SLNDDPGIPIWIPQSKSRNNIVS 633
            ++H +KGLE   V +     ++ +  + + +   P     +   +      +    +I  
Sbjct: 748  SIHKSKGLEFHTVLIPFCDWKLENETNNQLVWCAPPEEPYNAISLVPVNYSTTMAESIYR 807

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                H +     +   LLYV  TRA   LI+                    +        
Sbjct: 808  QDYLHERLQLWVDNLNLLYVAFTRAGKNLILWSRKEQKGTMSELLANTLPHIAKDGAGSW 867

Query: 694  RVKKIKLT-NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
              +        I        +    +P N   +     ++ +  ++ P+       N ++
Sbjct: 868  DEEASIYENGKICPSPVPVSQHDADNPANDEAKPLYYEQKPLYCERKPEVYEQQPVNRLS 927

Query: 753  EPYI--------------LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
            +  +                 S         ++   S  +  NRG ++H L   I T  E
Sbjct: 928  QKPVKLPVHMESMLHDIEFRQSNRSADFIAGVDEAESSQRFINRGRLLHTLFSAIET--E 985

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
                N I+    +        E + +     R    P +    S      +     I   
Sbjct: 986  KDIDNAISQLVFEGVIGRSETE-EEIRNLTQRAFSLPQVKDWYSGTWQ--LFNECDIIWQ 1042

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS-YPN 917
            +   + + R D++ +  + I + ++K               +  Q+  Y ++L    Y  
Sbjct: 1043 ENGELRTRRPDRVMMRGEEIVVVDFKFGKPN--------KKYNKQVQGYMQLLVRMGYVA 1094

Query: 918  KSLVCLLIYVSEPKVFII 935
            +++   L Y+ E  +  +
Sbjct: 1095 ENIRGYLWYIEENNIEPV 1112


>gi|126434059|ref|YP_001069750.1| UvrD/REP helicase [Mycobacterium sp. JLS]
 gi|126233859|gb|ABN97259.1| UvrD/REP helicase [Mycobacterium sp. JLS]
          Length = 1091

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 140/1029 (13%), Positives = 272/1029 (26%), Gaps = 192/1029 (18%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
              +           +LW L +  V +    + +       T +      Q A      +E
Sbjct: 130  LPIEPETRLLG-ETELWQLAHRVVCEHPGPLEIDKTPAAVTDMVLRLAGQLAEHLVDTDE 188

Query: 65   RFS---LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                   L     T    P +                     +D               +
Sbjct: 189  LRDTHVELERLVHTLPAGPYQ---------------------RDRGPSQWLLRMLATQTE 227

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             T   + L   L+   +  K    V+DF   +     L         +  ++      +L
Sbjct: 228  RTE-LIPLVDALHRRMQSEK----VMDFGMQMAAAARLAAAHP---QVGAELRARYRVVL 279

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   Q   + +L                L AVGD  QSIY + GA    + R  
Sbjct: 280  LDEYQDTGHAQRVALSALFG------GGVDDGLALTAVGDPIQSIYGWRGASATNLPRFA 333

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                    +      ++EL  S+R+    L + + V +           S      R   
Sbjct: 334  TDFP---LSDCTPARVLELRTSWRNPPSTLHLANAVSAEARQR------SVAVRSLRPRP 384

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
              + GT++L        +                             +A  ++       
Sbjct: 385  GAEPGTIRLALLDNVAAERD--------------------------WLADEVARRYDAAR 418

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                            VL+R+  D   +            + V       L     + D+
Sbjct: 419  AEDEA------PPTAAVLLRRNADAAPMAEALTA----RGVPVEVVGLAGLLGVAEVADV 468

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------------------- 462
            +A+ R +       + +  +  P +     DI  +  +  E                   
Sbjct: 469  VAMLRLVADPTAGAAAMRTVTGPRWRLGGRDIAALWRRAVELDDGGPGPEATAAEIVARA 528

Query: 463  --------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                               E         I      +  +   + IA      +   ++ 
Sbjct: 529  APDADAACLADAICDPGPAERYSPEGYRRIVALGRELTSLRGHLGIALPDLVTEVRRVLG 588

Query: 509  GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----A 564
               + R       G    + LD F++          +++  L++ L+             
Sbjct: 589  VDVEARAAMPVPAGWSGTEHLDAFVDVVADYAGRPGATISGLLAYLDAAMERENGLAPAD 648

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP- 623
             + +   V+I+TVH AKGLE  VV +     ++F      +  +    +  P +      
Sbjct: 649  LAVSTERVQILTVHAAKGLEWQVVAVPHLSGRIFPSTAQARTWLTDPADLPPLLRGDRAT 708

Query: 624  ---------------QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                             K  ++ ++D  +HL++   +E  RLLYV +TRA D L++  H 
Sbjct: 709  TTDHGVPVLDTSDVNDRKILSDRINDHKRHLEQRRVDEERRLLYVALTRAEDTLLLSGHH 768

Query: 669  NTSNEKKSNQRT------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
              + E K    +                     +V          +K  L +++ +  W 
Sbjct: 769  WGATEAKPRGPSEFLEELKDIIDRAEQAGQPCGVVDQWAPAPAEGEKNPLRDNVKEVLWP 828

Query: 711  AYEWSTHHPENTPLEREETIK----------------------QLMDEQKIPKKLFSPIK 748
            A              +                              +       L  P +
Sbjct: 829  ADPAGGRRAAVDRGAQLVARAMAGAVETVQDVDGWAADVDALLAERERAAQKPPLTLPAE 888

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
              ++    L+        + N       +   + G   H  +Q  F     +R   +   
Sbjct: 889  VSVSTLVNLSNDPDAVLSRLNRRVPTRPDPNASLGTAFHDWVQRYFG---AERLFDLDDL 945

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI 868
                   +   E + L    T  + +P         + + + V    +    + ++ GRI
Sbjct: 946  PGAVDSDFRRTEAEQLTELQTSFMLSPW-------AARTPIDVEVPFDMVIGETMVRGRI 998

Query: 869  DQISISQQ-NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLI 925
            D +         I ++KT                 QL++Y          P + +     
Sbjct: 999  DAVFADDDGGATIVDWKTGAAPDTPSA--AEHAAIQLAVYRLAWAQLSGCPVERVRAAFH 1056

Query: 926  YVSEPKVFI 934
            YV   +   
Sbjct: 1057 YVRPNQTLR 1065


>gi|24373706|ref|NP_717749.1| exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1]
 gi|24348071|gb|AAN55193.1|AE015657_5 exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1]
          Length = 1259

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 134/920 (14%), Positives = 286/920 (31%), Gaps = 152/920 (16%)

Query: 105  DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII-NTNDLLKKR 163
               +   ++  T           +  + ++  + + K+   VL  +DL+      +L   
Sbjct: 311  APLLDHMEQLATLINAIKPAFLFSAKQGISERFAKQKQLKNVLTPDDLLTTLAAAMLANP 370

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR--------- 214
            D        +       LIDE QDT  +Q+ +   + +     K  +S+           
Sbjct: 371  DTLP---KAVASRFPVALIDEFQDTDPLQFAIFSWIYQTRLGVKAQNSTAVEPKARTDSK 427

Query: 215  -TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             +L  +GD KQ+IY+F GA+    +  +R  Q              L  ++RS+ +++  
Sbjct: 428  LSLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHY----------FLDTNYRSSRNLVAG 477

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            V+ +F+   N           ++  +S   +        Q+V    +    + +      
Sbjct: 478  VNHLFAQHPNPFISQSIPFDRVKTPASAAAK--------QLVESTANSAALRLKLLREGE 529

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR-VIQAKDILVLVRKRKDTPLITFL 392
              L + S+   LA   A  I+ ++           +  + AKDI +LVR R +  ++   
Sbjct: 530  TGLNKASARQTLAEDTAAEITRLLTEAANGQCHTPKGPLIAKDIAILVRDRNEAAVMKTA 589

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                 +  +I  V   R  + D +  +++  + R + S +D+ +    L + L  +S + 
Sbjct: 590  L----SKRQIGAVFLSRDSVFDTVEAREMALILRALASPKDERALRSALATALLGYSAEQ 645

Query: 453  IFKICTQRHETETVYEYIQKFANCGISK--------FQHVIKYIHELIHI-AQFCSPHDF 503
            I        + + + E           +          +    +  L+   +   +    
Sbjct: 646  IHAFNQDEEQRQMLLEQFFALHQIWQKRGIMPALLSLANATHMVARLLQTPSVTATADQD 705

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------ 557
                  A  G ++            L E L      +      +  L++  EQ       
Sbjct: 706  SEEPDEASNGERRLTD------FRHLAELLQQ----KATEIDGISALLNWYEQQLIDNTG 755

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                +    +  N V+I+T+H +KGLE PV F+        + +    M    +  D   
Sbjct: 756  TDEQQLRLESEQNLVQIVTIHKSKGLEYPVCFIPFVSLARDNRRRPTPMLYHRTDADGAQ 815

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
              +W  +            +  K+ T  E  RLLYV +TR      +   +++   K   
Sbjct: 816  ELVWDIEGTDEG------WEQAKQETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKAGI 869

Query: 678  QRTWYDM----------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
            +   ++               F       +  L    +  + I+ E    +  +  L   
Sbjct: 870  KSQLHETAIGYLLGVTDAGCDFARLHSAAQALLNGVESNAQAISVECVADNIADNKLHTG 929

Query: 728  ETIKQLMDEQKIPKKLFSPIK---------------------------NDINEPYILNPS 760
            ET    ++ + + ++  +P +                                   L+ S
Sbjct: 930  ETQSHTLNARNVTRQYRTPWRVGSYSGLVKNAPHAKASPGADDEVSAVFGAEPANSLSES 989

Query: 761  TIDTKGK---TNLESLLSDNQTFNRGLIIHKLLQVIFTLPE--HKRKNFITSYCTKNAKL 815
            +           L +  S  +  N G  +H +L++I          +    +        
Sbjct: 990  SWQDSADVPQLPLLNRFSFERGANAGSFMHLVLELIDFTQAKIDLPRELPKAMLQYGIAP 1049

Query: 816  WPAKEYKNLLLSITRL----------LENPM--MTTAMSCDSYSEVSVSGKIN------- 856
                  ++  + I +           L NP   +   +   +  E+     +N       
Sbjct: 1050 EWQTVLQDWYMEILQAPLALMAQDNQLINPELCLAALVPQHTLVEMEFYLPLNRLKDAEL 1109

Query: 857  --------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI------ 896
                            +   ++ G ID     Q   +I +YK++H       +       
Sbjct: 1110 NQLLGQFGYDTALHFDELQGMLKGFIDLTFEYQGKFYIADYKSNHLGDTIQAYHYGALKQ 1169

Query: 897  ---PYTHIAQLSIYEKILKD 913
                + +  Q  +Y   L  
Sbjct: 1170 AISDHRYDLQYILYSLALHR 1189


>gi|161523326|ref|YP_001578338.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
 gi|160340755|gb|ABX13841.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616]
          Length = 721

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/613 (17%), Positives = 195/613 (31%), Gaps = 128/613 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 201 AALVYRNYVATLHAYQAVDFDDLIRLPTELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 257

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 258 ACQYQLLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 304

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S   +              
Sbjct: 305 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEHGM-------------- 345

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                             + T+  D           A  + +          + ++  +R
Sbjct: 346 --------------GDAITVTACND-------EEHEAESVVFR---------LSAHKFER 375

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 376 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 431

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   I   +
Sbjct: 432 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQIEPLR 491

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 492 MFCDFIQRLTERADKEPASVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 551

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E + + +   L          ++             + + VR+ TVH 
Sbjct: 552 KGTKPETEAVDGEADGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVHA 611

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+             +   PI                   
Sbjct: 612 SKGLEYPHVFLVGVEEGIMPHR----------GGSEDDGPI------------------- 642

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL+YV +TRA   L +         +++        + +   +D      +
Sbjct: 643 DDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETVVCEPSRFIPEMGLDDAPPPTPE 702

Query: 700 LTNSINKDEWIAY 712
                 KD   + 
Sbjct: 703 EAPMTPKDRLASL 715


>gi|237747303|ref|ZP_04577783.1| rep helicase [Oxalobacter formigenes HOxBLS]
 gi|229378654|gb|EEO28745.1| rep helicase [Oxalobacter formigenes HOxBLS]
          Length = 687

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/607 (15%), Positives = 187/607 (30%), Gaps = 121/607 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  L  +Y         +DF+DLI    +L +  D    +R K  +++ ++L+DE QDT+
Sbjct: 168 AARLYRNYVATLSAYQAVDFDDLIRLPVELFRTND---KVREKWQRKLRYLLVDEYQDTN 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY++ GA  + +   ++       
Sbjct: 225 TCQYELVKLLVSGI-------GKKPMFTAVGDDDQAIYAWRGATIENLKTLQQDF----- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L  ++RS+  IL   + V             S   +              
Sbjct: 273 ---SDLKVIRLEQNYRSSMRILQAANSVIGNNPKLFEKKLWSDHGL-------------- 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          +     +  D   +           A  I  ++       +  +R
Sbjct: 316 --------------GEPVVTAAMSDEEQE-----------AEQIVMLLSA-----HRFER 345

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  D  +L R      +     R       I    +          I+D+++  R + 
Sbjct: 346 RARFADYAILYRGNYQARIFETALR----RENIPYTVSGGQSFFARAEIRDIISYLRLVA 401

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P     +  +  +     + + +++E +       K +   +   +
Sbjct: 402 NLDDDPAFIRAVTTPRRGVGQSTLEALGAFAGQWQCSLFEAVYKGGLEAKLSPRQLRPLR 461

Query: 483 HVIKYIHELIHIAQF-------CSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDE 531
               +I+ +   A          +  +    ++            F           + E
Sbjct: 462 EFCDFINSIEERASRPGTSAKGENAAELLDELMREIAYEAYLYDNFDERTAKNKWQNVLE 521

Query: 532 FLNFTLRNEQNS------YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           F N+     +          +L EL   +        R      + V + T+H AKGLE 
Sbjct: 522 FTNWLKEKSKGGKLGDGPEKNLLELTQMVALMTMLEGRD--EEPDAVHLSTLHAAKGLEF 579

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           P VFLV     +  H     M                                   +  +
Sbjct: 580 PHVFLVGVEEGILPHLGDADMP-----------------------------ADQLATRIQ 610

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL+YVG+TRA   L +         ++  Q      + +   N+    + +      
Sbjct: 611 EERRLMYVGITRAQRTLHVSWCKKRKRGREVVQCEPSRFIGEMKLNEGVAVQKESETLTP 670

Query: 706 KDEWIAY 712
           K      
Sbjct: 671 KARLANL 677


>gi|167856609|ref|ZP_02479309.1| exodeoxyribonuclease V beta chain [Haemophilus parasuis 29755]
 gi|167852265|gb|EDS23579.1| exodeoxyribonuclease V beta chain [Haemophilus parasuis 29755]
          Length = 1195

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 133/906 (14%), Positives = 282/906 (31%), Gaps = 141/906 (15%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            + I ++  + +  L   +     +++         K             +L+    + K+
Sbjct: 303  DFINEKAEEGAEPLTHAIFAKNQDYLTAYQTQFEGKSKAIL--LYQFFSHLHQKLTDYKQ 360

Query: 143  KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
             +    F D++      L+  +    +  +I       +IDE QDT+  Q+EV R +  D
Sbjct: 361  THKEKSFGDMLSFLLSALQ-SERGTDLAQQIRALYPFAMIDEFQDTNQQQYEVFRRIFMD 419

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   ++S +    +GD KQSIY F GA+    L  K   Q++AT          L  
Sbjct: 420  ------QNTSEQGFIMIGDPKQSIYKFRGADIFTYLTAKNEVQEQAT----------LDR 463

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            ++RS  +++   +++F  PE                                  +     
Sbjct: 464  NWRSVPEVVDSCNRLFQFPEGN------------------NPPFLYHGIPFQPVKAKKAS 505

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDIL 377
            +       +    +  E    + A   AY I   +         +      R ++AKDI 
Sbjct: 506  DALVGEQATRCLLISTEFDEQLAAAHCAYQIQQQLKKSEQGLLFVQKEEGNRPLEAKDIT 565

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +LVR  K   LI      L   +  SV  ++R  + +    +DL  +    L+     S 
Sbjct: 566  ILVRSHKQASLIRT---ELLKRHIPSVFFSERNSVYETQEAQDLRFILSACLNPYRQSSL 622

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
            +  + + L+  +  DIF I       + V E    +    +   Q ++  +H++      
Sbjct: 623  LSAIGTSLWGLTSTDIFNIKQDEKAWDNVVESFVGYQQVWL--HQGILPMLHQIFVK--- 677

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                +    I       ++            L E L   + N +N ++ L+    +L   
Sbjct: 678  ---ENIIQRINALPNAERRITDLL------HLAELLQGAMPNLENEFALLRWYEQQLANP 728

Query: 558  P---PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   K+   +  + V+++T+H +KGLE PVV+L          K             
Sbjct: 729  DGYADEQKQRLESEESLVKVVTIHGSKGLEYPVVWLPFVAKASQPAKSKSMAIYQNDEGK 788

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL------------ 662
                        S  +   ++ K++ K+   E  RLLYV +TRA  QL            
Sbjct: 789  A---------YWSFGSQSDEIKKYIDKAEFAEDLRLLYVAVTRAKYQLNLILPSQFDDKW 839

Query: 663  -----IICKHSNTSNEKKSNQRTWY---------DMVYDSFHNDERVKKIKLTNSINKDE 708
                 ++      +     +Q T Y         +++       E   +  L   I+ + 
Sbjct: 840  NSLSYLLSSGEIGTGGVTPSQNTQYYLAQKGINAELITVDNDVPEDDWQPTLVQPIDIEA 899

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                       + T     +   + +  +     L +      +        +   +   
Sbjct: 900  KSFTGKIRTVGQITSFTALQAQNERLQHKGQNIPLVAFGDEAQDYDRTEFILSDFLEDNA 959

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
               S      +   G ++HK  +      +   +  + + C +          + L    
Sbjct: 960  QPYSRYQFPHSTKVGNLLHKFFEHWDFQ-QAVDQTQLQALCEQ--LDLDEAWLEPLTRWF 1016

Query: 829  TRLLENPM------MTTAMSCDSYSEVSVSGKINCPKK---------------------- 860
             ++++ P       +         +E     +++  +                       
Sbjct: 1017 EQVIQTPFGDQAVSLAQIFIHKRLNEWQFYLRLSNKEALYRLNQLLKKYSPLAKQLPDLT 1076

Query: 861  ----DIIISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHIPY-----THIAQLSIY 907
                +  + G +D I+      ++ +YK++         + + +        +  Q  +Y
Sbjct: 1077 LYNLEGFVRGFVDCIAQIDGKFYVIDYKSNFLGYLPQDYQADKLAKTMGQFRYDLQYLLY 1136

Query: 908  EKILKD 913
               +  
Sbjct: 1137 TLAVHR 1142


>gi|291320248|ref|YP_003515509.1| ATP dependent helicase [Mycoplasma agalactiae]
 gi|290752580|emb|CBH40552.1| ATP dependent helicase [Mycoplasma agalactiae]
          Length = 734

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 111/596 (18%), Positives = 186/596 (31%), Gaps = 122/596 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y E  K    LDF+DL+I  N+L  K      I  K   + ++IL+DE QDTS IQ
Sbjct: 192 IYNFYNEQLKHLQSLDFDDLLIKVNELFYKNPE---IVKKWALKYSYILVDEFQDTSAIQ 248

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+I+ L+          S    L  VGD  Q+IY + GA+   +L  ++  +       
Sbjct: 249 YEIIKYLS----------SQKAQLTIVGDPDQTIYRWRGADVNLILSFEKDFEN------ 292

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL   + +     N    +                        
Sbjct: 293 --TKTIILNKNYRSTKKILAAANNLIKFNRNRFNKNLV---------------------- 328

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     +  +  +   F    +        R +   I+++              IQ
Sbjct: 329 ------TDNPDGDEIEYIHAFSPEAE-------VRWVVQKINDLKKQ----------KIQ 365

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K+I +  R    +          K    I+              IKD +A  R I    
Sbjct: 366 LKNIAIFYRSNSYSRNFEEQLMNEK----INYRIFGGEKFYQRKEIKDALAFLRVIYDGN 421

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           D L    ++  P     E  + KI      +  ++Y+ +           + +I  I  L
Sbjct: 422 D-LQLKRIINVPPRKIGEASLNKIVSFANEKNLSLYKTLVTHYKELPVPKEVIINIIALL 480

Query: 492 -------IHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRNEQN 542
                    + Q    H      L      +             + +   L      E  
Sbjct: 481 NCVNKYKAALRQGNKIHVVLESFLKEIGFLKYVNEDVGLKGTGEENIRALLEGIKSWEIT 540

Query: 543 SY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +    L+E    +     +       + + V +MTVH AKGLE   VFLV     +F + 
Sbjct: 541 NPNKGLKEYFEYISLISASDSSD--ESMSYVSLMTVHAAKGLEFDNVFLVGMCENIFPN- 597

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                               +      EE  RL YV +TRA ++
Sbjct: 598 ---------------------------------YRAYKVAEAMEEERRLAYVAITRAKEK 624

Query: 662 LIICKHSN----TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           L +         +  EKK ++      +  + H  ++   I +   +  +E I   
Sbjct: 625 LFVSDSRGLLLYSQTEKKPSRFLKEMGIDINKHILQKDNSIFVDGELEDEEQIRKR 680


>gi|320540197|ref|ZP_08039852.1| DNA helicase and single-stranded DNA-dependent ATPase [Serratia
           symbiotica str. Tucson]
 gi|320029863|gb|EFW11887.1| DNA helicase and single-stranded DNA-dependent ATPase [Serratia
           symbiotica str. Tucson]
          Length = 674

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 105/694 (15%), Positives = 226/694 (32%), Gaps = 138/694 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E + + +      +   I+ + +L +E            ++        +++ +
Sbjct: 59  AAHEMKERVVQTMGR-KEARGLMISTFHTLGLEIIKREY--AVLEMKPHFSLFDDQDQLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K++  + +      + + +         + D      +  S     
Sbjct: 116 LL------------KDLTEKWLENDKTLVAQLISTISHWKNDLIDPTQAIALAHSERD-- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L  +    Y    +   VLDF+DLI+    LL+  +    +  +  + I ++L+DE QD
Sbjct: 162 KLFAHCYGLYHAHMRACNVLDFDDLILLPTLLLRCNEE---VCERWQKRIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L  +                VGD+ QSIYS+ GA P+ +   K      
Sbjct: 219 TNTSQYELVKLLVGN----------RARFTVVGDDDQSIYSWRGARPQNLALLKENFPA- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +       ST             G 
Sbjct: 268 -------LRVIKLEQNYRSSERILKAANILIANNPHVFEKRLFSTL------------GY 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +  + + + ++                          A R+            + ++  
Sbjct: 309 GEELKVITATNED-----------------------HEAERVV---------GELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +  +  D  +L R    + L   +        +I    +          IKDL+A  R 
Sbjct: 337 VKKTRYGDYAILYRGNHQSRLFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SK 480
           + + +DD +F+ ++ +P        + K+        ++++                   
Sbjct: 393 LTNPDDDSAFLRIVNTPKREIGPATLQKLGEWANQRNKSLFRASFDLGLSQHLSGRGLES 452

Query: 481 FQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
            Q    ++  +  +A+       HD    +       +   S    E  +  ++    + 
Sbjct: 453 LQRFTHWLGGIAKLAECDPVTAVHDLIHGVDYESWLFETSPSPKAAEMRMKNVNTLFGWM 512

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E      L ++++         +       ++V++MT+H +KGLE P VFLV 
Sbjct: 513 TEMLAGSELEEPMMLNQVVARFTLRDMMERGESEEQQDQVQLMTLHASKGLEFPYVFLVG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       +   +E  RL Y
Sbjct: 573 MEEGLLPHQSSID-----------------------------------EDKIDEERRLAY 597

Query: 653 VGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDM 684
           VG+TRA   LI  +C+      E    + + + +
Sbjct: 598 VGITRAQKTLIFTLCRERRQYGELVRPEPSRFLL 631


>gi|57242258|ref|ZP_00370197.1| DNA helicase II (uvrD) [Campylobacter upsaliensis RM3195]
 gi|57016938|gb|EAL53720.1| DNA helicase II (uvrD) [Campylobacter upsaliensis RM3195]
          Length = 677

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/610 (17%), Positives = 207/610 (33%), Gaps = 125/610 (20%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            + K        + +     K                 +Y+    K   +DF+DL++ T 
Sbjct: 139 SRFKNMAFGVEDVFEEAKKLKKEGREYEKAFKLATYYKNYQAYLLKYNFVDFDDLLLLTC 198

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            LL+  +       K      +I++DE QDT+ +Q ++++SL +          S   L 
Sbjct: 199 FLLEDEE----FAKKQSLIYRYIMVDEYQDTNFLQHQILKSLCK----------SHENLC 244

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIYS+ GA+ + +L  +   +           +++L  ++RS   IL   +K+
Sbjct: 245 VVGDDDQSIYSWRGAKVENILNFQNEFEN--------VKLVKLEQNYRSVGTILKAANKL 296

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            S  +   G +                               ++   ++    +  D   
Sbjct: 297 ISHNQKRLGKTLI----------------------------CTKDEGEEIEICACEDERD 328

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +          +A  I +++             ++A +I VL R    +  +        
Sbjct: 329 ESI-------MVAKKIKSLLKQG----------VKADEIAVLFRVNALSRALEEAL---- 367

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI- 456
              +I  +        +   IKDL+A  R I + EDD SF  ++  P   F E  + K+ 
Sbjct: 368 MREQIPYLLLSGMRFYERAEIKDLIAYLRLINNLEDDFSFKRIINRPKRGFGEVALQKLE 427

Query: 457 CTQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                   +++E +        F+    ++    ++ I  L  ++      D        
Sbjct: 428 NHALKHRISLFEALCNLEGSGAFSQKLQNELCDFVENIKSLRELSNLKDLIDGLDEKFKF 487

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANH 569
           K   ++     G + I  ++EF           +  +L+ ++SE+              +
Sbjct: 488 KDYYEK--QNDGEDKIANINEFCASLKDRINNENIENLETILSEISLLS-----EQDKAN 540

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           N + IM+VHT+KGLE   VF++      F   +                           
Sbjct: 541 NGICIMSVHTSKGLEFDYVFVIGLEMGFFPVGY--------------------------- 573

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                          EE  RL YV  TRA  +L +   ++  ++           + +S 
Sbjct: 574 ------------DNIEEERRLAYVAFTRAKKRLCLSYVNSRFHQGSRAYLQKSCFLEESG 621

Query: 690 HNDERVKKIK 699
             +E +K  +
Sbjct: 622 VLNEEMKMEE 631


>gi|300870941|ref|YP_003785812.1| ATP-dependent DNA helicase [Brachyspira pilosicoli 95/1000]
 gi|300688640|gb|ADK31311.1| ATP-dependent DNA helicase [Brachyspira pilosicoli 95/1000]
          Length = 666

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/558 (18%), Positives = 178/558 (31%), Gaps = 112/558 (20%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           K  V+DF+DLI+NT  L +K      I     +   +IL+DE QDT+L Q+++I+ LT+ 
Sbjct: 180 KENVMDFDDLILNTIKLFEKE---KNILEFYQKRFKYILVDEFQDTNLQQYKLIKMLTQK 236

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                N   +   L  VGD+ QSIY+F GA    +L  +   +           II L  
Sbjct: 237 ----NNNKETDNQLTVVGDDDQSIYAFRGANVSNILNFENDFEN--------TKIIRLEE 284

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++R   +++ V   V     +    +  S                             + 
Sbjct: 285 NYRCPKNVVEVALNVIKNNSHRHTKNVFSNK---------------------------KS 317

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
           + + E+W  Y D           A+ +A  I  +               +AKDI++L R 
Sbjct: 318 DYKIENWICYTDYEE--------AKSVANEIELLFDEG----------FEAKDIVILFRT 359

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +             + I+          +   IKD ++  R +    D+ S    + 
Sbjct: 360 NSQSRAYEKELMA----HSINYKIVGGVGFYERAEIKDSISFLRLLTGFNDNFSIRRTIN 415

Query: 443 SPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK-----FQHVIKYIHELIHIAQ 496
           +P     E    +       +  T+Y+ I       ISK      +     + +     +
Sbjct: 416 TPTRGIGEKTFAQFEAFADKKNLTLYDAIDIIEESNISKKALNSIKEYKNILEKYSKKTE 475

Query: 497 FCSPH--DFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQ---NSYSSLQ 548
               H    F   L        F S          D + E  N           +  S  
Sbjct: 476 EDPQHIEGVFFEFLKEIDYFSIFKSDGNIRIATAEDNIKELFNAYYSYLNYNYENPESSL 535

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            +   LE+       ++    + + +MTVH AKGLE  VVF+      VF H    +   
Sbjct: 536 NIRGFLEETTLYKDNSNEDKEDAITLMTVHNAKGLEFEVVFITGLEHGVFPHYFSLEEEN 595

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                                   RL YV +TRA  +L +    
Sbjct: 596 GIEEE----------------------------------RRLFYVAITRAKQKLYLTYAK 621

Query: 669 NTSNEKKSNQRTWYDMVY 686
                  + ++     + 
Sbjct: 622 RRRISSGTMEQAPSSFLM 639


>gi|254558836|ref|YP_003065931.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           DM4]
 gi|254266114|emb|CAX21866.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens
           DM4]
          Length = 795

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 99/606 (16%), Positives = 190/606 (31%), Gaps = 114/606 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+        +DF DL++    L ++      I         +IL+DE QDT++ 
Sbjct: 212 QLYAAYQARLATLNAVDFGDLLLLCLKLWRENPD---ILANYQDRFRYILVDEYQDTNVA 268

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          + + +  VGD+ QSIY + GAE   +LR +          
Sbjct: 269 QYLWLRLLAQ----------ARKNVACVGDDDQSIYGWRGAEVDNILRFEHDFP------ 312

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +++ L  ++RST  IL     + +  E   G +                       
Sbjct: 313 --GATVVRLERNYRSTGHILAAASGLIAKNEGRLGKTL---------------------- 348

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  + T  +DS  +       AR++A +I ++               
Sbjct: 349 ------RTEDEAGEPVTVTGSWDSEEE-------ARQVAESIESLQRRGHAL-------- 387

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VLVR       I            +           +   I+D +A  R  ++ 
Sbjct: 388 --SEIAVLVRISAQMREIEDRF----VQVGLPYRVIGGPRFYERAEIRDALAYLRVTMNG 441

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQHV 484
            DDL+F  +  +P     +  +  +    R +   +    +K       K       + +
Sbjct: 442 ADDLAFERIFNTPKRGLGDATLQTLHAFARADRIPLLAAARKLIETDELKPRARSMLRGL 501

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           ++     + + +     +    IL      + +      +    L+    F    E+   
Sbjct: 502 VESFTRWVRLVETKPHPEVAQTILEESGYTEMWQKDRSADAAGRLENLKEFVRSMEE--- 558

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               ++ + LE     ++ + +   + V +MT+H AKGLE   VFL      +F ++   
Sbjct: 559 --FPDMAAFLEHVSLVMEASEAEGADRVSLMTLHAAKGLEFDTVFLPGWEDGLFPNQR-- 614

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                          I    ++  EE  RL +VG+TRA  +  +
Sbjct: 615 ------------------------------AIDESGRAGLEEERRLAHVGLTRARKRAKL 644

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               N       +       + +       V +     S     +            TP 
Sbjct: 645 SFAVNRRIHGLWSSTIPSRFIDELPPQAVDVVEAPAHFSAGASRFDRNPTPFGSSYGTPG 704

Query: 725 EREETI 730
            +    
Sbjct: 705 WQRAQA 710


>gi|94263170|ref|ZP_01286988.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
 gi|93456541|gb|EAT06655.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
          Length = 1239

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 131/1031 (12%), Positives = 279/1031 (27%), Gaps = 161/1031 (15%)

Query: 2    KNRFGLSLNESYELIYKDLWPLP--------YFQVSDINKYVSLSMETGN--PTILKKAQ 51
                 +  ++    +   LW                +      L  +T     T  + A 
Sbjct: 196  HRHLPVVDDDEQGAVLAQLWEATLAAYGKARENWQQEWEAIGELLRQTEFQQKTRQQMAA 255

Query: 52   TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE---INKKSPDLKEKLKKSQDEFI 108
             L             + L     ++   P+K    +    + K             + + 
Sbjct: 256  GLLNRLADHLAGPEPASLVVPTGSEDLIPEKLADPKAKICMAKNIKAGNWPRHPFFEYWR 315

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                   +            L   +     +         F+DL+    + L        
Sbjct: 316  DYLVALQSLTAHYRRQLLAGLGATVRRELPKRLYAAGRQSFDDLLHRLAEALGDPG-RKA 374

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +   I       LIDE QDT  IQ+ + +++ +     +        L  +GD KQ+IY+
Sbjct: 375  LAGLIAARYPVALIDEFQDTDPIQYAIFQAVYQQASRAEAA----TRLILIGDPKQAIYA 430

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F GA+                          +  ++R+   ++  V+ +F+   N   + 
Sbjct: 431  FRGADI---------FAYLGAARDAGEQCYTMNTNWRADRSLVAAVNAIFAAQPNPFVVP 481

Query: 289  EDSTTTIRHRSSRIGQVGTVQL---WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            E +   ++ +          ++                 +  +       L + +  + +
Sbjct: 482  EIAFYPVKPQPEAGDGWHGGEVGGTAPLQFLTLAPAKVEELLTGARSKKQLARSTLENQI 541

Query: 346  ARRIAYTISNMIGTD---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
               +A  +  ++      T      +R +Q  DI +LVR+ +         +       +
Sbjct: 542  PALVAADLVKLLRGGATLTTGDAADRRPLQPADIAILVRENRQA----DEIQAALRLKGV 597

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
              V + R  + +    + L  L   +L Q  +      + S L   +  ++  +      
Sbjct: 598  KSVVHSRASVLNSRQAEQLAILLYGLLEQAGEGQRRAAMVSELLACTPAELVTLAEDEK- 656

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                             ++Q  +        I +         +I   K   ++ +    
Sbjct: 657  -----------------RWQQWLNDFSRWREIWRERGLISTMRIIDQEKGFTRRLLPMAD 699

Query: 523  NEVI----DVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVR 573
             E        L E L+   + E    ++L +   E      +      +    ++   VR
Sbjct: 700  GERRLTNYRHLFELLHHREKEEHLQATALLKWFDEARAGRADATAEAQELRLESDQEAVR 759

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H AKGLE PVV+           +   +  ++         P    Q K      +
Sbjct: 760  ILTIHRAKGLEFPVVYCPYLWKTWQKERRKPEEVLIYHD------PKADYQGKIALLPTA 813

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-------------------- 673
            +  +   +    E  RLLYV +TRA    ++   + +  +                    
Sbjct: 814  EERRLRAQEQFAEELRLLYVALTRAKHCCLVVWEAASGYQDTALAHLLHGGQQPITNDRA 873

Query: 674  ----------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-----DEWIAYEWSTHH 718
                      K+     W  +  D           +   S           IA  W    
Sbjct: 874  ELLADLTGACKRQPHWQWRPLPADPATVAPWRDPSRPEGSAGGYCRTLRHGIAPAWRVGS 933

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE---SLLS 775
                   R E        +              + P            K  L     L  
Sbjct: 934  FSQLIAARGEQAPDFSQSRDYDAPGQPASAPLADTPAAQGGEDHGEAVKQRLPARVPLAD 993

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN---AKLWPAKEYKNLLLSITRLL 832
                 N G ++H++ ++I      + +  I            + P K    L  ++  +L
Sbjct: 994  FPAGLNAGNLLHRIFELISFHEASEHRRIIAEQAATFGLTGAMEPEKVVAELSQAVAAVL 1053

Query: 833  ENPM-------MTTAMSCDSYSEVSVS--------------------------------- 852
            + P+       +         +E+S +                                 
Sbjct: 1054 QTPLLSDESFSLADIDDQHRLNEMSFTFPLCQRGSPLTAAALAAAFAEEAVGLPPAYPAH 1113

Query: 853  -GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIA 902
              ++        + G ID +   +   +I +YK++       ++ P         + +I 
Sbjct: 1114 LAELPFTALQGFMKGFIDLVFQHRGKWYIVDYKSNLLGDSHADYQPGRLWPPMVEHHYIL 1173

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1174 QYHLYTVALHR 1184


>gi|15600489|ref|NP_253983.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAO1]
 gi|107104399|ref|ZP_01368317.1| hypothetical protein PaerPA_01005475 [Pseudomonas aeruginosa PACS2]
 gi|116053444|ref|YP_793770.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894399|ref|YP_002443269.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa LESB58]
 gi|254238009|ref|ZP_04931332.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa C3719]
 gi|254243817|ref|ZP_04937139.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 2192]
 gi|296392155|ref|ZP_06881630.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAb1]
 gi|9951611|gb|AAG08681.1|AE004942_4 ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAO1]
 gi|115588665|gb|ABJ14680.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169940|gb|EAZ55451.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa C3719]
 gi|126197195|gb|EAZ61258.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 2192]
 gi|218774628|emb|CAW30445.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa LESB58]
          Length = 669

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 93/634 (14%), Positives = 206/634 (32%), Gaps = 125/634 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   +    +DF
Sbjct: 129 DDGVDEIKNYIGAWKNDLILPEEALEKARNPKE-----QTAAIVYLHYQRTLRAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  K   ++ ++L+DE QDT+  Q+ +++ L +D       
Sbjct: 184 DDLILQPVKLFQEHPD---VLQKWQNKVRYMLVDEYQDTNASQYLLVKLLVKD------- 233

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                    VGD+ QSIY++ GA P+ +++ K               ++ L  ++RST+ 
Sbjct: 234 ---RAQFTVVGDDDQSIYAWRGARPENLMQLKEDFP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + +   +       S           G    V                     
Sbjct: 283 ILKCANVLIANNPHVFEKQLWSEMG-------HGDPIRVIRCR----------------- 318

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                      +    A RIA  I  +           +      +  +L R      L+
Sbjct: 319 -----------NEDAEAERIAMEILTLH---------LRTERPYSEFAILYRGNHQAKLM 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     ++I    +          +KDLM+  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQIPYRLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    + Q   +++  +        P  
Sbjct: 415 SATLEKLGNYATQRKISMYAACDEMGLAEHLDSRFHERLQRFKRWMDGIRRQCAENEPIA 474

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              ++      +  +   +      L  ++    ++++ I++L
Sbjct: 475 VLRSMVMDIDYENWLRQNASSDKVAEFRMSNVWFLIEALKNTLERDEEGDMTIEQAIAKL 534

Query: 555 EQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                   ++        V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L +   +     
Sbjct: 582 ----------------------RSSIEADTVEEERRLAYVGITRARQNLAMTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            +    +    + +    D   + ++      K 
Sbjct: 620 GEIIDCSPSRFLDELPPEDLEWEGMEDAPQEVKA 653


>gi|257068093|ref|YP_003154348.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810]
 gi|256558911|gb|ACU84758.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810]
          Length = 932

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/668 (15%), Positives = 199/668 (29%), Gaps = 150/668 (22%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL----------------QQASQTQC 61
           ++  P     ++  NK  +   E     +   A+++                  A+  + 
Sbjct: 162 REALPGEILAITFTNKAAAEMRERVGELVGPVARSMWVSTFHSACVRILRRDAAAAGLKS 221

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
               +    S  L         + T++       L  ++   +++ +   D     +   
Sbjct: 222 SFTIYDSADSLRLITTIAKDLQLDTKK--HAPRALASRISSLKNDLVDPID--FADQAES 277

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
           +          +  +Y E  ++   +DF+DLI  T  LL++      IR    +   H+L
Sbjct: 278 AKNPFERTLAQIYTNYTERLRQANAVDFDDLIGLTVTLLRENPA---IREGYRRRFRHLL 334

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+  Q++++R L  D            +L  VGD  QSIY+F GA  + ++  +
Sbjct: 335 VDEYQDTNTAQYQLVRELVGD--------DPHASLTVVGDSDQSIYAFRGATIRNIIEFE 386

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +               I L  ++RST +IL   + V    E  +  +             
Sbjct: 387 QDFP--------SARTIVLEQNYRSTQNILAAANSVIEENEGRRKKN------------- 425

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW         Q   +Q +     D   +       AR I   I  ++    
Sbjct: 426 --------LW-------TDQGEGEQITLYVADDEQAE-------ARYIGRQIDALVDDGR 463

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                     +A DI +  R    +  +            +           +   IKD 
Sbjct: 464 ----------RAGDIAIFYRANAQSRALEDQL----IRIGLPYRVVGGTRFYERREIKDA 509

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FA 474
           +A  + + +  D+++   +L  P     +     +      E     E +++       A
Sbjct: 510 IAYLQVLANPADEINLRRILNVPKRGIGDRAEAAVAMLAERERIGFGEALRRAEEAPGIA 569

Query: 475 NCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
              ++  +  +  + +L  +A     P +    IL       +       +    ++ L 
Sbjct: 570 TRSLNAVRTFVAMLEDLQQMAADGDGPAELLEAILQRSGYYAELQGSDDPQDESRLENLA 629

Query: 531 EFLNF--------------TLRNEQN---------------------------------- 542
           E ++                   E                                    
Sbjct: 630 ELVSVAAEFEAQAEEEDALASEYEDEADAPATDTPGTEAPETEAPGAPGADIAPDAALTA 689

Query: 543 -SYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                   +   LE+              +  V +MT+HTAKGLE PVVFL       F 
Sbjct: 690 PDDPEASLVDRFLEKVSLVADADQIPGEEDQFVTLMTLHTAKGLEFPVVFLTGMEDGTFP 749

Query: 600 HKHIKKMH 607
           H       
Sbjct: 750 HNRTLSDP 757


>gi|228473051|ref|ZP_04057808.1| UvrD/REP family helicase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275633|gb|EEK14410.1| UvrD/REP family helicase [Capnocytophaga gingivalis ATCC 33624]
          Length = 1071

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 148/929 (15%), Positives = 301/929 (32%), Gaps = 130/929 (13%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             E + +    L       +  + + + + G         +L            F++    
Sbjct: 223  KEDLKQQRKGLYTVVEDAVKHFFAFTQKEGITADHFIRGSLYNFFDKISKNGFFAIDKGV 282

Query: 73   F----LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMFK 121
            F      +     K + +  + KK P + + L ++Q     + +           YK   
Sbjct: 283  FDRVWFVESGE--KPLYSNGLLKKDPAIAQLLDENQQWISDLLNSIEKSYWWDQFYKRLI 340

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              +  L + K L       K++  +L   +F  +I  T       + S +I  KI     
Sbjct: 341  KNVTLLAVLKSLQEEIIAIKEEENILPISEFNSIIHQTII----DEPSPFIYEKIGTRYQ 396

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H  IDE QDTS +QWE +  L  D    +N      +L  VGD KQSIY + G   +   
Sbjct: 397  HYFIDEFQDTSTLQWENMLPLVADAVHSENLSKQQGSLLIVGDAKQSIYRWRGGRAE--- 453

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS---------IPENAQGLSE 289
            +   +  K          +  L  ++RS  +++T  +  F                   E
Sbjct: 454  QFMELYNKEKKPFHLIQEVQNLDYNYRSRREVITFNNSFFHFVATHPLLFNNTGKHRYGE 513

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                  +    R  + G + + E +      + N  +E  T   + + Q          I
Sbjct: 514  LYLEAEQKIPDREAERGFISI-EFIDKNSTQEVNYSEEEATEGENVVEQTDIRI---ETI 569

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
               I        +           KDI +L R+ K+   I             +V+ ++ 
Sbjct: 570  EKYIKEAKSYGYLD----------KDICILSRRNKECIEIAAQLSE----KGYNVISSEA 615

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
             +L +   I+ L+ L    L Q ++   + +L S               +  +   ++ +
Sbjct: 616  LLLKNIPEIQFLIHLISISLYQTNEKEKIALLFS-------------YAKVKQITELHAF 662

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            + ++ +  +  F   + +         +   + F+  I     G    +          L
Sbjct: 663  MSQYVHKPVEAFFSAMGF------SLSYFHLYSFYEGI-----GYAIRVFGLAKPSDAYL 711

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
             +FLN     +     ++ + ++  E+    +  +     N + IMT+H +KGLE PVV 
Sbjct: 712  AQFLNIIYEYKSVRNGNIADFLTYWEEKKDKLAISAPEGVNAISIMTIHKSKGLEFPVVI 771

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
              D    + S K    + +           +    S     I ++++    +    +   
Sbjct: 772  YTDVNDSLRSGKDTLWICVPKEQYHGFEHLLIDDYSGLEK-IDAEIVLQQSQVELLDAIN 830

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             +YV MTR  D L I        E                     +  +       +  W
Sbjct: 831  TMYVAMTRPKDLLYILSQRPKEKE---------------QEKISTLSGVLQAYLQAEGRW 875

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
               E      +  P+ER    +                     +  +++PS      ++ 
Sbjct: 876  NPSESHYTFGQLLPIERAALGEND--------------YIPFKQRSVISPSYT-IVTRSG 920

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                 S  +   RG ++H++L  +  + +      +  +  +       ++   L   + 
Sbjct: 921  SMWNTSREEAIARGNLLHEILGQL--ITQEDIPELLHHFFLE--GRISQEQIAPLSHQLE 976

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG---RIDQISISQ--QNIFIFEYK 884
            ++  +P++    +            I   ++ + I+G   R D+++  +  Q   I +YK
Sbjct: 977  KITTHPLLKEYYTK--------EYIIYNEREWLDITGEYLRPDRVAYHKPTQRAVIIDYK 1028

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            T        E  P  + AQL  Y + L+ 
Sbjct: 1029 TG-------EDHPQ-YQAQLRRYAQTLEQ 1049


>gi|194443787|ref|YP_002043150.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194402450|gb|ACF62672.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 674

 Score =  249 bits (636), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 104/670 (15%), Positives = 215/670 (32%), Gaps = 121/670 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+   I  +I    +         Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---IGELIAHHFV------NKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 664

Query: 720 ENTPLEREET 729
                +R ++
Sbjct: 665 AMMAAKRAKS 674


>gi|332107681|gb|EGJ08905.1| UvrD/REP helicase [Rubrivivax benzoatilyticus JA2]
          Length = 675

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/592 (17%), Positives = 190/592 (32%), Gaps = 118/592 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A  +   YEE       +DF+DLI     LL +   +   R K      HIL+DE QD
Sbjct: 163 RVAAVVMKRYEERLAAFQAVDFDDLISLPLKLLARDAEA---REKWQSTFRHILVDEYQD 219

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+E++++L  +               AVGD+ QSIY + GA  + + R  +   + 
Sbjct: 220 TNAVQYELLKALVGE----------HTPFTAVGDDDQSIYGWRGATIENLKRLPQDFPR- 268

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST +IL   + V +           S           G    
Sbjct: 269 -------LKVIPLEQNYRSTGNILRAANNVIAQNPKIYEKKLWSEF---------GDGEP 312

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V+L                           +  S    A R    I  + G D       
Sbjct: 313 VRLL--------------------------ECDSEEHEAERAVARIQALRGADA------ 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I   D  +L R      ++    R      +I    +      D   IKDL A  R 
Sbjct: 341 --RIAWADFAILYRANHQARILEQKLR----QAQIPYKVSGGQSWFDRAEIKDLCAWLRL 394

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEY------IQKFANCGISK 480
           +++ +DD +F+  + +P        +  +     + + +++E               I  
Sbjct: 395 LVNPDDDPAFLRAVTTPKRGIGHQTLASLGEFAGKWKVSLFEALFSPTLKTALKGKAIDS 454

Query: 481 FQHVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDE 531
                +Y++ L   A+     +         L      +       +E         + +
Sbjct: 455 LHEFGRYVNALEERARHTRGGEEARKLMLEFLTDIGYERHLHDGEDSEKIAASRWSNVVD 514

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKR--AHSANHNEVRIMTVHTAKGLESPVVF 589
           F+++  R         ++ + E+ Q    I      S + + V + T+H +KGLE P V 
Sbjct: 515 FVDWIARRAGGDEDRPEQTVLEVAQTIAVIISLAERSEDQDVVTLSTLHASKGLEWPHVV 574

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L      +                                       + +     EE  R
Sbjct: 575 LAGVNEGLLP--------------------------------FRAGEEEMTPERLEEERR 602

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           L+YVG+TRA   L++         ++         + +   N+   ++    
Sbjct: 603 LMYVGITRARRTLVVSTLRRRKKGRELVAAVPSRFIAEMKLNESTGREDPRE 654


>gi|325524957|gb|EGD02885.1| UvrD/REP helicase [Burkholderia sp. TJI49]
          Length = 696

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/580 (17%), Positives = 188/580 (32%), Gaps = 133/580 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPTELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   I   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQIEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 466 MFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 536 ---------TLRNEQNSY----------SSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                     +  E   +           +L  LI  +        +    + + VR+ T
Sbjct: 526 KGTKPEAAEAVDGEAEGFHNADGLGDTGKNLLGLIQTVALMSMLEGKD--EDPDAVRLST 583

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           VH +KGLE P VFLV     +  H+                           +  +    
Sbjct: 584 VHASKGLEYPHVFLVGVEEGIMPHR----------------------GGSEDDGPIDS-- 619

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                   EE  RL+YV +TRA   L +         +++
Sbjct: 620 -----ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 654


>gi|219871763|ref|YP_002476138.1| exodeoxyribonuclease V subunit beta [Haemophilus parasuis SH0165]
 gi|219691967|gb|ACL33190.1| exodeoxyribonuclease V, beta subunit [Haemophilus parasuis SH0165]
          Length = 1195

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 133/906 (14%), Positives = 285/906 (31%), Gaps = 141/906 (15%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            + I ++  + +  L   +     +++         K             +L+    + K+
Sbjct: 303  DFINEKAEEGAEPLTHAIFAKNQDYLTAYQTQFEGKSKAIL--LYQFFSHLHQKLTDYKQ 360

Query: 143  KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
             +    F D++      L+  +    +  +I       +IDE QDT+  Q+EV   +  D
Sbjct: 361  THKEKSFGDMLSFLLSALQ-SERGDTLAQQIRALYPFAMIDEFQDTNQQQYEVFHRIFMD 419

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   ++S +    +GD KQSIY F GA+    L+ K   Q++AT          L  
Sbjct: 420  ------QNTSEQGFIMIGDPKQSIYKFRGADIFTYLKAKNEVQEQAT----------LDR 463

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            ++RS  +++   +++F  PE                                  +     
Sbjct: 464  NWRSVPEVVESCNRLFQFPEG------------------DNPPFLYHGIPFQPVKAKEAS 505

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDIL 377
            +       +    +  E    ++A   AY I   +         +      R ++AKDI 
Sbjct: 506  DTLVGEQATRCLLISTEFDEQLVAAHCAYQIQQQLKKSEQGLLFVQKEEGNRPLEAKDIT 565

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +LVR  K   LI      L   +  SV  ++R  + +    +DL  +    L+     S 
Sbjct: 566  ILVRSHKQASLIRA---ELLKRHIPSVFFSERNSVYETQEAQDLRFILSACLTPYRQSSL 622

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
            +  + + L+  +  DIF I       + V E    +    +   Q ++  +H++      
Sbjct: 623  LSAIGTSLWGLTSTDIFNIKQDEKAWDNVVESFVGYQQVWL--HQGILPMLHQIFVK--- 677

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                +    I       ++            L E L   + N +N ++ L+    +L+  
Sbjct: 678  ---ENIIQRINALPNAERRITDLL------HLAELLQGAMPNLENEFALLRWYEQQLDNP 728

Query: 558  P---PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   K+   +  + V+++T+H +KGLE PVV+L          K             
Sbjct: 729  DGYADEQKQRLESEESLVKVVTIHGSKGLEYPVVWLPFVAKASQPAKSKPITIYQNDEGK 788

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                        S  +   ++ K++ K+   E  RLLYV +TRA  QL +   S    + 
Sbjct: 789  AH---------WSFGSQSDEIKKYIDKAEFAEDLRLLYVAVTRAKYQLNLILPSQFDEKW 839

Query: 675  KSNQRT--------------------------WYDMVYDSFHNDERVKKIKLTNSINKDE 708
             S                                +++  +    E   +  L   I+ + 
Sbjct: 840  NSLSYLLSNGEIGTGGIAPSQNTQYYLAQKGIKAELITVNNDVPEDNWQPTLVQPIDIEA 899

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                       + T     +   + +  +     L +      +       ++   +   
Sbjct: 900  KSFTGKIRTVGQITSFTALQAQNERLQHKGQNIPLATFGDEAQDYDRTEFIASDFLEDNA 959

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
               S      +   G ++HK  +      +   +  + + C +          + L    
Sbjct: 960  QPYSRYQFPHSTKVGNLLHKFFEHWDFQ-QAVDQTQLQALCEQ--LNLDEAWLEPLTTWF 1016

Query: 829  TRLLENPM------MTTAMSCDSYSEVSVSGKINCPKK---------------------- 860
             ++++ P       +T   +    +E     +++  +                       
Sbjct: 1017 EQVIQTPFGEQAVSLTQIFTHKRLNEWQFYLRLSNKEALYRLNQLLKKHSPLAKQLPDLT 1076

Query: 861  ----DIIISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHIPY-----THIAQLSIY 907
                +  + G +D I+      ++ +YK++         + E +        +  Q  +Y
Sbjct: 1077 LYNLEGFVRGFVDCIAQIDGKFYVIDYKSNFLGYLPQDYQAEKLAKTMGQFRYDLQYLLY 1136

Query: 908  EKILKD 913
               +  
Sbjct: 1137 TLAVHR 1142


>gi|298505648|gb|ADI84371.1| exodeoxyribonuclease V, beta subunit [Geobacter sulfurreducens KN400]
          Length = 1204

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 123/1009 (12%), Positives = 278/1009 (27%), Gaps = 173/1009 (17%)

Query: 9    LNESYELIYK--DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
              E  +       LW     +++ I         + +         L  A          
Sbjct: 215  AGEIRDAFAALSSLWRTQRAEIAAILAADPGLSRSRSNYHPDLVPGLLVAMDGYAAGADP 274

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
              L + F             ++ +    D  +      D   ++  +       +     
Sbjct: 275  YALFAGFDKFTTGFLAGQRLKKADPPRHDCFD----LCDRLARLTSQRLLLLKAE----- 325

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
               A          K +  V  ++DL+ + +         A +  +        LIDE Q
Sbjct: 326  --FAARGRERLAALKAQRNVRGYDDLLTDLHAA-LGGPGGAALADRPRGRYRAALIDEFQ 382

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +Q+ + R++                LF +GD KQ+IYSF GA+    L  ++    
Sbjct: 383  DTDQVQYRIFRAVFS---------GGAVPLFLIGDPKQAIYSFRGADVFAYLEARQEIPA 433

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG--- 303
                         +  ++RST +++  V  +F +      L+ D        + R G   
Sbjct: 434  E--------RRFTMDRNWRSTPEMVEAVSSLFRLGGEHPFLAGDIAFPPVTAARRQGCSF 485

Query: 304  ---QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                   +QLW     + D              D +   +    +   +A  IS ++   
Sbjct: 486  GDRDPAPLQLWFFRRGESDR-------------DCINLGTGRQRIVTAVADEISGLLADG 532

Query: 361  TIF------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                      +G+ + +   D+ V+VR   +  L+    R       I  V      L +
Sbjct: 533  RAGTACLEDEDGRMQPLTPGDVAVIVRSHFEAGLVQQALRE----RGIPSVVQSADSLFE 588

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                 ++  +   +    ++      L + LF  + +D+  +                  
Sbjct: 589  TREAGEVWTVMGAVAEPGNEGRVRAALVTALFGLNGNDLALL------------------ 630

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLD 530
                + ++  I    +   + +       F  +L  +  R++ +     E          
Sbjct: 631  MEQEAAWEARIAAFRDYRDLWREQGFMTMFRALLDREGVRERCLPLPDGERRLTNLRHCA 690

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQY---PPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            E L+      +    +L     E           +    ++   VRI+TVH +KGLE PV
Sbjct: 691  EVLHQAAVERRLGPDALTAWFGERVSVPPPGEDYQIRLESDDRAVRIVTVHVSKGLEYPV 750

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            VF       +   +    + +            +   +    +   +  +  +     E 
Sbjct: 751  VFAPFMWGGL---RDDGDLTLCHEEG-------YRLVADFGTDRRDERQRRARTEALAEN 800

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY------------------------- 682
             RLLYV +TRA  +  +        E  +     +                         
Sbjct: 801  LRLLYVALTRARCRAYLVWGKFRGAETSAPGWLLHGSRPDGGGDPVALLEGTLKKATDQT 860

Query: 683  -----DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                 D +  +      V +    + + +      E      +                 
Sbjct: 861  LLERLDHLATASGGGIAVTEDPCPDRLPRFRPAMGEAPLVCRDFRGDIDAGWRVASFTSF 920

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                +  + + +    P  L P            S+ +  +    G+ +H L + +    
Sbjct: 921  ASGHREPAELPDRDQTPPELPPDAASDTAAPPEGSMFAFPRGPRAGIFLHGLFEQLDFAV 980

Query: 798  E--HKRKNFITSYCTKNAKLW-PAKEYKNLLLSITRLL-----ENPMMTTAMSCDSYSEV 849
                  ++ +     +N            ++ ++  +       +  +         +E+
Sbjct: 981  AGDDTVRDLVRRELERNGHGAQWLDPVSRMVGNVLNVPLGGEGNSFRLADLAPGSWLAEL 1040

Query: 850  SV-------------------------------SGKINCPKKDIIISGRIDQISISQQNI 878
                                             + +I   +   ++ G +D +       
Sbjct: 1041 EFYFPLRFVRDAQVATILAGAGVLPQGADLGAVARRIAFGEARGMVRGFVDLVFRHSGRY 1100

Query: 879  FIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILKDSYPNK 918
            ++ ++K++H   +  ++ P           +  Q  +Y   L      +
Sbjct: 1101 YLIDWKSNHLGNRAEDYGPERLCREMERSLYPLQYLLYTVALNRFLERR 1149


>gi|315609029|ref|ZP_07883999.1| ATP-dependent helicase [Prevotella buccae ATCC 33574]
 gi|315249233|gb|EFU29252.1| ATP-dependent helicase [Prevotella buccae ATCC 33574]
          Length = 1121

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 140/968 (14%), Positives = 283/968 (29%), Gaps = 103/968 (10%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
                     E      +  + L       +  +       G   +      LQ+    + 
Sbjct: 222  MRAIRKEAQERLAGQAERFFRLLADNGLSVEDFA-----NGASGVCGYFLKLQKGEYDET 276

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK---EKLKKSQDEFIKIRDR----F 114
                  LL    L    +P+K +  +E    +P      E L    +E  ++R +    +
Sbjct: 277  -----KLLGKRVLDAMESPEKWVKKKEAVPGNPAFDLVTEVLFDLLNETERLRPKAVRDY 331

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRY 171
             +  +    +  L L   +        ++        L+ +T  LL        S +I  
Sbjct: 332  KSADLTLRHINQLRLLGSIETKVRALNEEANRF----LLSDTQMLLHSLIDGSDSPFIFE 387

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            KI  ++ H++IDE QDT  +QW   + L E+        +       VGD KQSIY +  
Sbjct: 388  KIGTQLEHVMIDEFQDTGTVQWANFKVLLEECMSRDGAAN-----LIVGDVKQSIYRWRS 442

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             + + +   +R     A +A Q+ ++  L  ++RS  +I+   +  F      +      
Sbjct: 443  GDWRLLNDIEREF---APHAEQRLAVTSLCTNYRSERNIIAFNNAFFRTAAALEEADRQE 499

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            VQ W Q  +             ++  D L +             
Sbjct: 500  DNAEGAAQLAHAYADVVQQWPQGRAPRGRVEVELLPKSSTDDDMLDKTVETVDY------ 553

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                ++      +           I +LVR  +    I      L     I +V ++ F 
Sbjct: 554  ----LLRAGVATNK----------IAILVRSNRTIQDIADHFMTL--RPDIPLVSDEAFR 597

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            L    A+  ++   R+++++ED LS V ++++         +        +     E   
Sbjct: 598  LDASAAVGMIINALRYLVNEEDYLSKVALVEAYQKQVVGTTLTDSELLVRDRAGKTEGDT 657

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            +      +          +           D    +          + R   E    +  
Sbjct: 658  RLNEELPADLTE-----PDKRARLLAMPLFDLAERLFSLLG-----LKRLKGES-AYVCA 706

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            F +      Q++ + +   + E +           A  N +R++T+H +KGLE   V + 
Sbjct: 707  FFDRLTAYLQDNTTDITAFLEEWDANLHEKTIQSDAA-NGIRLLTIHKSKGLEFDNVVMP 765

Query: 592  DTGS--QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                  +  S   +  +      +  P +P+       + +I      H       +   
Sbjct: 766  FCDWTLERTSGNTVWCVPSEEPYSRLPLVPVDFSAKGMKGSIYEADYHHEHLQNIVDNLN 825

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV  TRA   L +     T+N +          +  S   +         +      +
Sbjct: 826  LLYVAFTRAGRNLFVFGKRGTANSRSYLIEQCLAQMAGSEEFETADYHEGADDKTESVGF 885

Query: 710  IAYEWSTHHP--------------------ENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
               E S   P                       P   +E +    +          P   
Sbjct: 886  AFGELSVEKPTVSPTAGTAAGAENGGDTALSEIPESEKEPVSSQPNVFIRRPMPLRPDIE 945

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
                      S          E         N G I+H+L   I         + +    
Sbjct: 946  TFESHAEFKQSNKSRDFVGGDEEEEKRRSYINTGNILHRLFSNI--RTATDIDDAVRELE 1003

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI--NCPKKDIIISGR 867
             +          ++L   I + LE   +    S     ++     I     +   +   R
Sbjct: 1004 QEGVLYDEELTAESLRRMIHKRLETEQVADWFS--GRWQLFNECTILQLNRETGKVEEHR 1061

Query: 868  IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             D++    +   + ++K   H           +  Q+  Y ++L+    ++ +   L YV
Sbjct: 1062 PDRVMTDGRQTIVVDFKFGTH--------RDEYHRQVRQYMELLRQM-GHRQVEGYLWYV 1112

Query: 928  SEPKVFII 935
             +  +  +
Sbjct: 1113 YKNDIERV 1120


>gi|254788114|ref|YP_003075543.1| ATP-dependent DNA helicase Rep [Teredinibacter turnerae T7901]
 gi|237686994|gb|ACR14258.1| ATP-dependent DNA helicase Rep [Teredinibacter turnerae T7901]
          Length = 673

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 93/660 (14%), Positives = 210/660 (31%), Gaps = 125/660 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 K I+ +  +  +  +     +  +    + +     ++ +S          +  
Sbjct: 113 DAKALLKEIMLKNGDIDTDLVDTVQHQISNWKSGLIEPAQAAELAQSAGE--QAWARVYE 170

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +A      +DF+DLI   + L    D    +  +  Q+I ++L+DE QDT+  Q+++
Sbjct: 171 RYNKALHAYNAVDFDDLIRLPSVLFASNDD---VLQRWRQKIRYLLVDEYQDTNSSQYQM 227

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L                L  VGD+ QSIY++ GA P+ +   K+             
Sbjct: 228 VKQLIGHRGA----------LTVVGDDDQSIYAWRGARPENLSLLKQDFP--------SL 269

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RSTA IL V + + +   +    +  S              G  +    + 
Sbjct: 270 QVIKLEQNYRSTARILKVANTLIANNPHEFDKTLWSDL------------GMGEPLRLIR 317

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
             ++                          A R+A  I          +   +R  + +D
Sbjct: 318 CSNE-----------------------EAEAERVATEI---------LTQRLRRQCKFRD 345

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             VL R      LI    +     ++I    +          IKD+MA  R +++ +DD 
Sbjct: 346 FAVLYRGNHQARLIELKLQ----HHQIPYNMSGGTSFFSRAEIKDIMAYLRLLVNPDDDN 401

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        +  +         ++     +          G+   +    ++
Sbjct: 402 AFLRVINTPRRQIGTGTLEALGRYATEREVSLLTACDEMGLHAVIPKKGLENLREFCNWL 461

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTL------ 537
             + +      P      ++                    + ++ +   ++         
Sbjct: 462 GRVRNNCHNNEPIAAIREMINDINYEGWLHQNASSPKVAEKRMENIWTLVDSIRGTLEKI 521

Query: 538 -RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             +E      +   +S L       ++      + V+++T+H +KGLE P V+L+    +
Sbjct: 522 SEDEMTGEERINTAVSRLLLQDLLDRQEEEDLTDRVQLLTLHASKGLEFPHVYLIGMEEE 581

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +  H++  + + +                                        L YVG+T
Sbjct: 582 LLPHRNSIEENNIEEERR-----------------------------------LTYVGIT 606

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA   L +   +      +         + +    D   +          ++  A   ++
Sbjct: 607 RAKKTLTMTLAATRKQFGEKQATDPSRFLEELPEEDVEREGFSPATKEENEKKGAEAMAS 666


>gi|116328993|ref|YP_798713.1| exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii serovar
            Hardjo-bovis L550]
 gi|116330399|ref|YP_800117.1| exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii serovar
            Hardjo-bovis JB197]
 gi|116121737|gb|ABJ79780.1| Exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii serovar
            Hardjo-bovis L550]
 gi|116124088|gb|ABJ75359.1| Exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii serovar
            Hardjo-bovis JB197]
          Length = 1054

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 133/863 (15%), Positives = 266/863 (30%), Gaps = 106/863 (12%)

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                +L  A+ +   +    K +  + ++ +I+ T D LK   +       +       +
Sbjct: 181  RQKTALIAAEMVAREF----KTSEWMSYDQMILQTRDSLKNPHLCK----ALQSRYKVGI 232

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT  +Q+E+   L  +     N  +  + L+ +GD KQSIY F GA+    LR K
Sbjct: 233  IDEFQDTDSVQYEIFSKLFLEP----NNETEQKILYLIGDPKQSIYGFRGADIGTYLRAK 288

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            +  +        K   I L +++RS  +++   +++F      Q        +       
Sbjct: 289  KELKSH------KAQEISLNVNYRSVPELICAYNELFGGKTGEQSFFPIVERSFESTPIE 342

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
              +V   +   +++     +  P Q       D+     + +   R I   I  +  ++ 
Sbjct: 343  YSEVSAPEKNPKILLSDKHRQGPIQIVRFIGKDTWKTNDAKNAWGRFIGEEILKLTRSEN 402

Query: 362  IFS-----------NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             FS           +  ++ +  ++I +LV+ + +  L     +       I      + 
Sbjct: 403  PFSYQILEESDEKIHFAEKKLNFREIAILVKSKAEGKLAEQSLK----LRGIPCSFYKQE 458

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             +        +  +   +L      S+  +L   LF    D +        E+       
Sbjct: 459  GIYQSPESYQISNIFECLLDPNKPSSYRKLLLGDLFQIHPDHLVAFDEHSIESYEKTTLD 518

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
            +        KF  + + I E   I       D                 R       +  
Sbjct: 519  RWKTLAIDRKFPELFRSIEEDSRIFLTEDETDIDWE-------------RKKTNYGQIFR 565

Query: 531  EFLN-FTLRNEQNSYSSLQELISELEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPV 587
            + L               +  + ++E                + V+I+T+H++KGLE PV
Sbjct: 566  KLLQFQIANQAGLEEILEELKLLQIESKNEQEPPLFEKETEKDAVQILTLHSSKGLEWPV 625

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            VFL    S                + +  G   W               +     +  E 
Sbjct: 626  VFLFHLSSNFVP------EIYDYPVTEKDGERYWKLSLWDNEEEKKISKEEYSYQSLNEN 679

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             RLLYVG+TR   +L +  ++ T+++K  +   +  +     H  E      L + I   
Sbjct: 680  KRLLYVGITRPQVRLYLPFYTPTNHKKTKDSAYYKILYPRLRHILENEPDPSLFHPIAWT 739

Query: 708  EW------IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                          T   E           +     ++        +   +E   L+   
Sbjct: 740  PISFDQTDPNIRNRTRDSEVRLTPLLHCESEPSKTIRLHSYSSLKTRAKTSENESLSILE 799

Query: 762  IDTKGKTNLESLLSDNQT----FNRGLIIHKLLQVIFTL---PEHKRKNFITS------- 807
                 K++                 G  +H LL+ +       +  R+            
Sbjct: 800  EAEYFKSDDAEGAETEDALPSSAATGSFLHALLEELDFSFFKTKTPREVLKNRKVLSRMD 859

Query: 808  ------YCTKNAKLWPAKEYKNLLLSITRLLENPM-------------MTTAMSCDSYSE 848
                    +K  K     E +        +L N +             +      +  SE
Sbjct: 860  FHLNYFRLSKENKKNTLSEKETYQKRAGEILWNSLNANIPLQDKTSFSLVDLGKENRISE 919

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI-------EHIPYTHI 901
            +     ++   K+ ++ G ID +   +   +I +YK++              E+    + 
Sbjct: 920  MDFHLSLDPTGKN-LLKGSIDLVFEIKNKFYIADYKSNLLEDYSPLSLRRSVENTENRYD 978

Query: 902  AQLSIYEKI----LKDSYPNKSL 920
             Q  IY  +    LKD +  K +
Sbjct: 979  LQRDIYAMVLYEYLKDLFGPKDV 1001


>gi|198283952|ref|YP_002220273.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665213|ref|YP_002426586.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248473|gb|ACH84066.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517426|gb|ACK78012.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 662

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 96/635 (15%), Positives = 205/635 (32%), Gaps = 116/635 (18%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + +++    +  +  Q    + ++     +  ++       A ++   Y+ +      
Sbjct: 122 RNLLREANGPSDLAEAIQSRISRFKNDGIFPEEARADDRLGQEAAHIYTTYQRSLSACNA 181

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +D +DLI+    LL+    +   RY     I ++L+DE QD++  Q+ +I+SL       
Sbjct: 182 VDLDDLILLPIRLLQDDAEA---RYAWQDRIRYLLVDEYQDSNGAQYRLIKSLLG----- 233

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                +   L AVGD+ QSIYS+ GA    + R  +              +++L  ++RS
Sbjct: 234 -----TRHNLTAVGDDDQSIYSWRGAAADNLDRLAQDFPN--------LKVVKLEQNYRS 280

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  IL   + V +   +       ST    H                             
Sbjct: 281 TGRILQAANTVIAQNPHFFEKRLWSTLGDGH----------------------------- 311

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                      + ++ +  A ++   I           +  +R  + +D  +L R     
Sbjct: 312 ------SIRALRCANETDEAEQVVNAILR---------DRFQRQGEYRDYAILYRSNHQA 356

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                  R    + +I    +      +   IKD ++  R +++ +DD +F+  + +P  
Sbjct: 357 RPFETALR----NARIPYQISGGISFFERSEIKDFLSYLRLLVNPDDDPAFLRAVNTPRR 412

Query: 447 NFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI----AQFCSPH 501
           +     + ++    +    +++  +   A     K +  +      +++           
Sbjct: 413 SIGSSTLERLGAFAKERNLSLFAALWDDALDVPDKARIALHGFAGWVNLKTDEIGKTELI 472

Query: 502 DFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNFT--LRNEQNSYSSLQELISELE 555
                +       Q   +           + + E LN+   L+ +     +L E+++ L 
Sbjct: 473 PALQSLPEEIGYLQYLQNEGDEKDAARRWENIQELLNWMQRLQEQDEGPQTLAEILNRLM 532

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +     R    + + +R+ T+H AKGLE P VFLV    ++  H               
Sbjct: 533 LFHVLE-REEDDDRDVLRLSTLHAAKGLEFPQVFLVGAEEELLPH--------------- 576

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                        +E  RL YVGMTRA  +L +          +
Sbjct: 577 --------------------RNSETLEQIQEERRLFYVGMTRARFRLTLSLCRKRRRYGQ 616

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
                    + +        +  +           
Sbjct: 617 DVHPEPSRFLQEIPKEHLDWQGDQNPEEEMDPTAA 651


>gi|94265105|ref|ZP_01288871.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
 gi|93454435|gb|EAT04730.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1]
          Length = 1239

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 127/1031 (12%), Positives = 280/1031 (27%), Gaps = 161/1031 (15%)

Query: 2    KNRFGLSLNESYELIYKDLWPLP--------YFQVSDINKYVSLSMETGN--PTILKKAQ 51
                 +  ++    +   LW                +      L  +T     T  + A 
Sbjct: 196  HRHLPVVDDDEQGAVLARLWDATLAAYGKARENWQQEWEAIGELLRQTEFQQKTRQQMAA 255

Query: 52   TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE---INKKSPDLKEKLKKSQDEFI 108
             L             + L     ++   P+K    +    + K             + + 
Sbjct: 256  GLLNRLADHLAGPEPASLVVPTGSEDLIPEKLADPKAKICMAKNIKAGNWPRHPFFEYWR 315

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                   +                +     +         F+DL+    + L        
Sbjct: 316  DYLVALQSLTAHYRRQLLAGFGATVRRELPKRLYAAGRQSFDDLLHRLAEALGDPG-RKA 374

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +   I       LIDE QDT  IQ+ + +++ +     +        L  +GD KQ+IY+
Sbjct: 375  LAGLIAARYPVALIDEFQDTDPIQYAIFQAVYQQASRAEAA----TRLILIGDPKQAIYA 430

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F GA+                          +  ++R+   ++  V+ +F+   N   + 
Sbjct: 431  FRGADI---------FAYLGAARDAGEQCYTMNTNWRADRSLVAAVNAIFAAQPNPFVVP 481

Query: 289  EDSTTTIRHRSSRIGQVGTVQL---WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            E +   ++ +          ++                 +  +       L + +  + +
Sbjct: 482  EIAFYPVKPQPEAGDGWHGGEVGGTAPLQFLTLAPAKVEELLTGARSKKQLARSTLENQI 541

Query: 346  ARRIAYTISNMIGTD---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
               +A  +  ++      T      +R +Q  DI +LVR+ +         +       +
Sbjct: 542  PALVAADLVKLLRGGAALTTGDAADRRPLQPADIAILVRENRQA----DEIQAALRLKGV 597

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
              V + R  + +    + L  L   +L Q  +      + S L   +  ++  +      
Sbjct: 598  KSVVHSRASVLNSRQAEQLAILLYGLLEQAGEGQRRAAMVSELLACTPAELATLAEDEK- 656

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                             ++Q  +        I +         +I   K   ++ +    
Sbjct: 657  -----------------RWQQWLNDFSRWREIWRERGLISMMRIIDQEKGFTRRLLPMAD 699

Query: 523  NEVI----DVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVR 573
             E        L E L+   + E    ++L +   E      +      +    ++   VR
Sbjct: 700  GERRLTNYRHLFELLHHREKEEHLQATALLKWFDEARAGRADATAEAQELRLESDQEAVR 759

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H AKGLE PVV+           +   +  ++         P    Q K      +
Sbjct: 760  ILTIHRAKGLEFPVVYCPYLWKTWQKERRKPEEVLIYHD------PKADYQGKIALLPTA 813

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-----------NEKKSNQRTWY 682
            +  +   +    E  RLLYV +TRA    ++   + +              ++       
Sbjct: 814  EERRLRAQEQFAEELRLLYVALTRAKHCCLVVWEAASGYQDTALAHLLHGGQQPITNDRA 873

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP------------------- 723
            +++ D     +R    +          +A       PE +                    
Sbjct: 874  ELLADLTGACKRQPHWQWRPLPADPAAVAPWRDPSRPEESAGGYCRTLRHGIAPAWRVGS 933

Query: 724  -----LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE---SLLS 775
                   R          +              + P     +      K  L     L  
Sbjct: 934  FSQLIAARGGQAPDFSQGRDYDAPGRPASAPLADAPAAQGGADHGEAVKQRLPARVPLAD 993

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN---AKLWPAKEYKNLLLSITRLL 832
                 N G ++H++ ++I      + +  I            + P K    L  ++  +L
Sbjct: 994  FPAGLNAGNLLHRIFELISFHEASEHRRIIAEQAAAFGLTGAMEPEKVVAELSQAVAAVL 1053

Query: 833  ENPM-------MTTAMSCDSYSEVSVS--------------------------------- 852
            + P+       +         +E+S +                                 
Sbjct: 1054 QTPLLSDESFSLADIDDQHRLNEMSFTFPLCQRGSPLTAAALAAAFAEEAVGLPPAYPDH 1113

Query: 853  -GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIA 902
               +        + G ID +   +   +I +YK++       ++ P         + +I 
Sbjct: 1114 LAALPFTALQGFMKGFIDLVFQHRGKWYIVDYKSNLLGDSHADYQPGRLWPPMVEHHYIL 1173

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1174 QYHLYTVALHR 1184


>gi|83719895|ref|YP_443754.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis E264]
 gi|83653720|gb|ABC37783.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis E264]
          Length = 848

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 100/578 (17%), Positives = 182/578 (31%), Gaps = 130/578 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +    + ++LIDE QDT+
Sbjct: 328 AALVYRNYVATLHAYQAVDFDDLIRLPTELFAKNE---PVRDRWQNRLRYLLIDEYQDTN 384

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 385 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 431

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 432 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 477

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 478 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 502

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 503 RTQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 558

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   I   +
Sbjct: 559 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQIEPLR 618

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         +  R        + EFL +   
Sbjct: 619 IFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKR 678

Query: 536 ---------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVH 578
                     +  E   + +   L          ++             + + VR+ TVH
Sbjct: 679 KGTKPEPDEAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVH 738

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H        +                             
Sbjct: 739 ASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDD--------------------------- 771

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                 EE  RL+YV +TRA   L +         +++
Sbjct: 772 ---ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 806


>gi|87121050|ref|ZP_01076941.1| DNA helicase II [Marinomonas sp. MED121]
 gi|86163542|gb|EAQ64816.1| DNA helicase II [Marinomonas sp. MED121]
          Length = 735

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 112/734 (15%), Positives = 234/734 (31%), Gaps = 150/734 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +  ++VS  +             +  + + L            
Sbjct: 30  GAGSGKTRVLVHRIAWLMHAYEVSPFSIMAVTFTNKAAKEMQARIEQLVGVPPQGMWVGT 89

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKI------------- 110
           F  L+   L      + +     + +     D  ++L+  +    +              
Sbjct: 90  FHGLAHRLL------RAHWRDAGLKENFQIMDSDDQLRMVKRLMREQNIDETRWPPKQVC 143

Query: 111 -------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                   +      +  S        + L   YEEA ++N  LDF +L++  ++LL   
Sbjct: 144 WYINGQKDEGRRAAHVPDSHDPFSKGMRELYYTYEEACERNGTLDFGELLLRAHELLLGN 203

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                +     +   H+L+DE QDT+ IQ+  +R L  D             + AVGD+ 
Sbjct: 204 PA---LLRHYQERFVHVLVDEFQDTNSIQYAWLRILVGDKGS----------ITAVGDDD 250

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA+ + +    +           +   I L  ++RST  IL   + +    ++
Sbjct: 251 QSIYGWRGAKIENIQNFTKHF--------NEVQTIRLEQNYRSTGHILKAANGLIKNNDD 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G                      +LW             ++ S  + F+   +     
Sbjct: 303 RLGK---------------------ELW-------TESPEGEKISLYAGFNEQDE----- 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR I   I       T            +D+ +L R    + ++           +I+
Sbjct: 330 --ARFILSIIKKWRDDGTSL----------RDMAILYRSNAQSRVVEECL----VREQIA 373

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHE 462
                     D L IK+ +A  R  +   DD +   ++  P     E  I  I    R +
Sbjct: 374 YRIYGGHRFYDRLEIKNALAYARLAIDANDDGAMERVINVPPRGIGERSIGTIRELARDQ 433

Query: 463 TETVYEYIQKFANCGI------SKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGR 514
             ++++   +     +      +  +  +  +  + +   +      + F  ++      
Sbjct: 434 GCSMWQAASEIVRQKLLPARATNAIEAFLALVDGMANSVQSDDLGLGEVFEQLIQEAGLI 493

Query: 515 ---QQFISRFGNEVIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIKR-AH 565
              ++     G   ++ L E ++          E         +++ L+Q          
Sbjct: 494 AFHEKEKGEKGEARVENLKELVSAATGFSWTQTETEEQEYSSPMMAFLDQAVLDAGEAQA 553

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               + +++MT+H+AKGLE P+VFL      +F  +   +                    
Sbjct: 554 DEYQDAIQLMTLHSAKGLEFPLVFLTGVEENLFPSRMSFEEPG----------------- 596

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                              EE  RL YVG+TRA ++L I    +       +  +    +
Sbjct: 597 -----------------RLEEERRLCYVGITRAMEKLYITYAESRRLHGSESFNSPSRFI 639

Query: 686 YDSFHNDERVKKIK 699
            +   +     +++
Sbjct: 640 NEIPSDCLEEVRLR 653


>gi|56708170|ref|YP_170066.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670641|ref|YP_667198.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254370654|ref|ZP_04986659.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|56604662|emb|CAG45720.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320974|emb|CAL09103.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568897|gb|EDN34551.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|282159383|gb|ADA78774.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 671

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/617 (16%), Positives = 191/617 (30%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 138 QAKISFWKSALLTPDQVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 198 ---SNIQKLWTDKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 297 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 321

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 322 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        + K+     + 
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNTDDDRAFLRVINTPKREVGSATVHKLGEYASQH 428

Query: 464 ETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +        +  +            I           S  +        +     
Sbjct: 429 HCSFFHTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLSTVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 634 IDELPETDLYWVGTEKE 650


>gi|167587899|ref|ZP_02380287.1| UvrD/REP helicase [Burkholderia ubonensis Bu]
          Length = 696

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 102/614 (16%), Positives = 194/614 (31%), Gaps = 129/614 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPAELFARNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAITTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 466 MFCDFIQRLTERADKDPATVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 536 ---------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVH 578
                     +  E   + +   L          ++             + + VR+ TVH
Sbjct: 526 KGTKPEAAEAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+                           +  +      
Sbjct: 586 ASKGLEYPHVFLVGVEEGIMPHR----------------------GGSEDDGPIDS---- 619

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 EE  RL+YV +TRA   L +         +++        + +   +D      
Sbjct: 620 ---ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETVVCEPSRFIPEMGLDDAPPPAP 676

Query: 699 KLTNSINKDEWIAY 712
           +      KD   + 
Sbjct: 677 EEAPMTPKDRLASL 690


>gi|46580467|ref|YP_011275.1| ATP-dependent DNA helicase UvrD [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|46449886|gb|AAS96535.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio vulgaris
            str. Hildenborough]
 gi|311234209|gb|ADP87063.1| UvrD/REP helicase [Desulfovibrio vulgaris RCH1]
          Length = 1152

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 147/981 (14%), Positives = 284/981 (28%), Gaps = 104/981 (10%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
                 + +   L  L            +L+  T +  +   A  L+   + +       +
Sbjct: 209  PTTDADAVRARLVTLHERAR---QGATTLTRVTADENLAVAANFLKFLVKVEESSPFAKV 265

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
              S +L +     + +        S   +             R R    +   + +  + 
Sbjct: 266  PESAYLHKTN-LDECLNKASRGNASAQAESAFSAFMAALAAFRTRGRLLQRALAIMPLVG 324

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            +A+ L     + + +   +  + L      +L      +    ++   + HIL+DE QDT
Sbjct: 325  IAETLARRLPDYQLREGKVPAQLLPQMARRVLDGEYGVSEAFCRMGTRLAHILVDEFQDT 384

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S  QW  I+ L  +            +L  VGD KQ+IY + G +        R      
Sbjct: 385  SKDQWAAIQPLAVECLS------RGGSLTWVGDVKQAIYGWRGGDSALFDAVLRD--GEL 436

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                       LP ++RS  +I+   + VF++  +    +      +   +        V
Sbjct: 437  LAIAGDGISGTLPRNWRSRPEIVHFNNDVFALLGDEAHATAVLRAMLPEGTPPDVFSEAV 496

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                +  +    +  P+ +  T     +     A+  +  +   +   + +  +     +
Sbjct: 497  DELARAFTGAAQETPPRGDDETQEEGFVRLTHVAAFDSEELDAEVKTALRSLFMGDLALR 556

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R  + +D+ VLVR   +   +          + I VV  +   L DH  I   +AL  F+
Sbjct: 557  R--RWRDVAVLVRTNGEAGRVATWLME----WDIPVVTENSLRLADHPLISQTVALLGFL 610

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY- 487
                DDL+F      P       D   +     +                  F  V +  
Sbjct: 611  DYPRDDLAFWEFAAGPEL---LGDAAGLDAPAMDDWLAEGGRGPLFTRFRDAFPAVWRRW 667

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            I      A   S +D    +    +   ++    G      L  FL      E     SL
Sbjct: 668  IAPFYSRAGLMSVYDTVREVYTRFRVFDRYPEDAGF-----LRRFLEVVHAAEGQGLVSL 722

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               +   ++     K       + VR+MT+H AKGLE PVV +         H    +  
Sbjct: 723  STFLDFWKRTGGDEKVPMPEGMDAVRVMTMHKAKGLEFPVVVIPF-------HHQADRAD 775

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
              P   +  G+ + +P+         +       ++  E   +LYV  TR  ++L     
Sbjct: 776  DTPVRMEVEGLDLLVPRCPEMGKPYYEAF----AASVREQLHVLYVAWTRPVEELHAFIT 831

Query: 668  SNTSNEKKSNQRTWYDMVYDSF-----HNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
               + + +S       ++                 I  +   +     A E     PE+T
Sbjct: 832  ERKTGKGRSALLEGLKVLLGLCGVPETWGTWERGTIPASALADSAAEPAPERRPDQPEST 891

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN----- 777
            P       +           +  P    +  P     +                      
Sbjct: 892  PHTTASPARADSAPADTTPVVQEPAVQTVPPPQPAASACASETAPQATGHDTPSLMVDAA 951

Query: 778  -----------------------------------QTFNRGLIIHKLLQVIFTLPEHKRK 802
                                                   RG+++H  L+ +      +  
Sbjct: 952  ASIPAPASTPDDDWRPMQWLPRLKIFRNQLEEFTFTERRRGMLVHACLEALHPTGAPRED 1011

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLEN----PMMTTAMSCDSYSEVSVSGKINCP 858
                      A   P  +   +   +T +LE     P     +   +       G ++  
Sbjct: 1012 AARAVRHGIRAFPLPVPDEDAVAAELTTMLEWYAAQPETAHWLRHGT----PEQGILDAQ 1067

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             +      R D          + EYKT    P  IE        Q+  Y  +L D+ P +
Sbjct: 1068 GRLH----RTDLFVDDGNVRVVVEYKTGAPSPDHIE--------QVHRYLSLLLDADP-R 1114

Query: 919  SLVCLLIYVSEPKVFIIPQNK 939
             +  +L+Y+       I   +
Sbjct: 1115 PVHGVLVYLDRRTTQRIDPAE 1135


>gi|299065225|emb|CBJ36391.1| ATP-dependent DNA helicase [Ralstonia solanacearum CMR15]
          Length = 680

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/627 (16%), Positives = 189/627 (30%), Gaps = 130/627 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R K    + + L+DE QDT+
Sbjct: 153 AALVYRNYVATLHAYQAVDFDDLIRIPAELFARNEE---VRLKWQNRLRYFLVDEYQDTN 209

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L         +H       AVGD+ Q+IY + GA    +   +        
Sbjct: 210 ACQYQLLKLLAG------GSHLRAPAFTAVGDDDQAIYGWRGATLDNLKLLQTDFPN--- 260

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + V +        +  S                  
Sbjct: 261 -----LKVIKLEQNYRSTVRILNAANAVIAQNPKLFEKTLWS------------------ 297

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 298 -----------------EHGMGDAINVSGANDEEHEAESVVFK---------LSAHKFER 331

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      L   + R      +I  V +      D   IKDL A  R I 
Sbjct: 332 RAQFRDYAILYRGNFQARLFEQILR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 387

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E         K A   +   +
Sbjct: 388 NADDDPAFIRAVTTPKRGVGNATLEVLGAFAGQAKVSLFEAAMMGGIEAKLAPRQLEPLR 447

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLR 538
              ++I  L   A           ++G              R        + EFL++  R
Sbjct: 448 VFCEFIVRLSDRAAREPAGTLLDEMMGGIHYEAYLYDTYDERQAQNKWTNVLEFLDWLKR 507

Query: 539 ---------------NEQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                           +          +L EL   +        R    + + VR+ T+H
Sbjct: 508 KGTKPENLEAEEATGYDNADGLMDAGKNLLELTQTIALISMLEGR--EEDPDAVRLSTLH 565

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H                                      
Sbjct: 566 ASKGLEYPHVFLVGVEEGILPHCREDDDLT------------------------------ 595

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                 EE  RL+YVG+TRA   L I         +++        + +    D+     
Sbjct: 596 --DEKIEEERRLMYVGITRAQRSLHITWCKRRKRARETVVCEPSRFIAEMKLGDDAGPTP 653

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLE 725
           + T      +              P  
Sbjct: 654 EDTMPAMSPKDRLGALKGLLAAKKPTA 680


>gi|262203378|ref|YP_003274586.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
 gi|262086725|gb|ACY22693.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
          Length = 1119

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 136/1085 (12%), Positives = 285/1085 (26%), Gaps = 234/1085 (21%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKK---AQTLQQASQTQC 61
              +  N +      +LW L +  V++    +  +    + T        +  +       
Sbjct: 131  LPVEPNSTLLS-ETELWQLAFSLVANWPDELHTTKVPASVTEAVLKLYGEMAEHLVDIDD 189

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            +    S L     T    P++     +   K  D+ ++ ++       + +         
Sbjct: 190  LARAGSDLYEMIPTLPKGPKQRGGPNQALLKIRDVIDERRELIPMVTALAE--------- 240

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                              A ++   LDF   +     L+        +     +    +L
Sbjct: 241  ------------------AMREQSALDFGSQMSLAARLVVGNPE---VVAAERKAFRAVL 279

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   Q  ++ +L      G  +  +P  + AVGD  QSIY + GA    + R  
Sbjct: 280  LDEYQDTGHSQRVLLSTLF-----GGTSRDAPVAVTAVGDPIQSIYGWRGASAANLPRFA 334

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                      G      EL  S+R+   +L + + V +             + +R R   
Sbjct: 335  GDFPA---ADGSPADRRELLTSWRNAEVVLRLANHVSAELRRRG----IPVSVLRARPDA 387

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                  + L E VV + +   +  +  W +  +                           
Sbjct: 388  PSGSAHIALTETVVDEREWIADAIETRWRAAENDGQA----------------------- 424

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                            +LVR+ +D+               I         L     + D+
Sbjct: 425  -----------PPTTAILVRRNEDSAP----LAAELERRGIPAEVVGIGGLLHVPEVTDV 469

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------------------RHET 463
            ++  R +       + + +L    +     D+  +  +                  R + 
Sbjct: 470  VSTLRLMADPMAGTAAMRLLTGARWRLGAADLAALWRRAAELAAEEIAAAGGAVTSREQL 529

Query: 464  ETVYEY---------------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            +   +                        +++  G ++ +     +  L          +
Sbjct: 530  DAALDAVLPTEVVDRAGIADAVVDPGDPSRYSPDGYARIRAFGAQLESLRRRIGQ-PLPE 588

Query: 503  FFTLILGAKKG-----RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                +            +    R      + LD F  +  R      + L  L++ LE  
Sbjct: 589  LVADVENTIGVGVEAQIRARRMRGAITGREHLDAFAEYVTRYADRRGADLPGLLAFLETA 648

Query: 558  PPTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                              V+I+TVH AKGLE  VV +      +F     +   +  +  
Sbjct: 649  ETIEKGLEPGRIEVAEQRVQILTVHAAKGLEWDVVAIPHLCHNIFPGGKAETTWLGSARE 708

Query: 614  DDPGI----------------------PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +                         +   K   + ++   + +     EE  RLL
Sbjct: 709  LPGELRGDLAIAAEQGSAHPEGYPVLDLHAVTDRKELEDTIATYKEAIADRRLEEDRRLL 768

Query: 652  YVGMTRASDQLIICK-HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            YV +TRA   L+I   H + S +K      ++  +  +  +      ++    +      
Sbjct: 769  YVALTRARHDLLISAHHWSESGDKPRGGSEFFTELLTAISDAVDDPTVESGGLVVDVLAP 828

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQK-------------------------------- 738
              +    +P    +         +  ++                                
Sbjct: 829  EPDDGAPNPLAERVLAAPWPADPLAGRRDGVRAAADLVLAEIAARDAPALFDTDGAPESD 888

Query: 739  --------------------IPKKLFSPIKNDINEPYILNPS--------TIDTKGKTNL 770
                                + ++  +    ++  P  L+ S          +   +   
Sbjct: 889  GDPDLSDEIAAWEAEVSALLVEREASNQALVEVELPTHLSVSQLVELDADEAEFARRLRR 948

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
             +    N T  RG   H  ++  F           T     +  L  A +      +   
Sbjct: 949  PTPFRPNPTARRGTAFHAWVERWFG---------ATRLLDIDE-LPGAADATATPDADLD 998

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHV 889
             L +  + +  +  S SEV            I++ GRID +         + ++KT    
Sbjct: 999  ALRDAFLASPWANRSPSEV--EVPFETVIAGIVVRGRIDAVFADPDGGWTVIDWKTGVVP 1056

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
                     +   QL+ Y          P   +     YV         +       A  
Sbjct: 1057 EP---ARRESLFIQLAAYRIAWAQLAGVPVDRVRAAFHYVRSGHTLAADELPDESVLAAK 1113

Query: 948  STKIP 952
              + P
Sbjct: 1114 LARAP 1118


>gi|209884405|ref|YP_002288262.1| DNA helicase II [Oligotropha carboxidovorans OM5]
 gi|209872601|gb|ACI92397.1| DNA helicase II [Oligotropha carboxidovorans OM5]
          Length = 857

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/605 (16%), Positives = 176/605 (29%), Gaps = 166/605 (27%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y+E  K     DF DL++    + ++      +  +      +IL+DE QDT++ Q
Sbjct: 204 LYTAYQERLKILNAADFGDLLLENIRIFREHPD---VLRQYQHRFRYILVDEYQDTNVAQ 260

Query: 193 WEVIR-------SLTEDFFVGKNTHS---------------------------------- 211
           +  +R        LT     G+++                                    
Sbjct: 261 YLWLRLLAQAPSPLTSPRLRGEHSRPSADVLEEGRRGEATALARSASGEGQNLDISLEDS 320

Query: 212 ---------------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
                          +P+ +  VGD+ QSIY + GAE   +LR                 
Sbjct: 321 APHPNPLPVNGERGQTPKNICCVGDDDQSIYGWRGAEVDNILRFDHDFP--------GAK 372

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           ++ L  ++RST  IL     + +  E   G +                            
Sbjct: 373 VVRLERNYRSTGHILATASHLIAHNEGRLGKTL--------------------------- 405

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                 + ++ S T  +DS  +       AR I   I                  +  +I
Sbjct: 406 -RTEDVDGEKVSVTGAWDSEEE-------ARSIGEEIEQFQRAGE----------KLNEI 447

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +LVR              L     +           +   I+D +A  R I S  DDL+
Sbjct: 448 AILVRASFQMREFEDRFVTL----GLPYRVIGGPRFYERAEIRDALAYLRVINSPADDLA 503

Query: 437 FVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIH 489
           F  ++  P     +  +  +    R     + E  +      +         + ++    
Sbjct: 504 FERIVNVPKRGLGDATVQLLHDHARKRRVPLTEAARAIIETDELKPKPRGSLRDLLASFD 563

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSS 546
                       +   ++L      + +      +     + L E +      E      
Sbjct: 564 RWSAQRDAIPHTELAEIVLDESGYTEMWQKDRSADAAGRLENLKELVRSMEEFENLHG-- 621

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                  LE     + R    + + V +MT+H+AKGLE   VFL      +F H+     
Sbjct: 622 ------FLEHISLVMDREGGGDEDAVSVMTLHSAKGLEFDNVFLPGWEEGLFPHQR---- 671

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                        +    ++  EE  RL +VG+TRA  +  I  
Sbjct: 672 ----------------------------ALDEQGRAGLEEERRLAHVGITRARRRAKIYF 703

Query: 667 HSNTS 671
            +N  
Sbjct: 704 ATNRR 708


>gi|310819562|ref|YP_003951920.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392634|gb|ADO70093.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
          Length = 781

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 116/755 (15%), Positives = 217/755 (28%), Gaps = 144/755 (19%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------QQASQTQCIEERFSLLS 70
            + ++P     V+  NK      E     +  +A  L        A+     E     L+
Sbjct: 58  VRRVFPWRILAVTFTNKAAREMRERLVQLLGAQAHELVVSTFHSSAAMILRREAEAVGLT 117

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-- 128
             F+      Q NI+ + + +   +   + ++      + ++        +     L   
Sbjct: 118 RSFVIYDDGDQLNIVKRAMREARVEPSMQPREILHRIDQEKNAARLPDAMQVDADDLRGM 177

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + K     Y+   +    +DF DL++    L +       +  K  +  +H+L+DE QDT
Sbjct: 178 VVKRTYQTYQRLLRAANAVDFGDLLLLLVSLFRDHPE---VLEKYRRRFSHVLVDEFQDT 234

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q+E++R L                L  VGD+ QSIY + GA    +L          
Sbjct: 235 NPVQYELLRLLA---------PPPGANLVVVGDDDQSIYRWRGASVDNILGFPNTYP--- 282

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +++L  ++RS   IL     V S           S                 
Sbjct: 283 -----GAKVVKLEQNYRSDQAILEAAHAVISKNRRRMAKKLWS----------------- 320

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                       +   +        D   +       A+ +A  I  +            
Sbjct: 321 -----------ERQRGEHLQLLILRDERAE-------AQEVARQIHALQREGF------- 355

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             I+   + V  R    + ++    R      ++           D   ++D  A  R +
Sbjct: 356 --IKYSGMAVFYRVNAQSRVLEEALR----LARVPYTLVSGRSFYDRAEVRDAAAYLRLM 409

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKF 481
           ++   D   + ++ +P     +  + ++     H+  ++YE I +             + 
Sbjct: 410 VNPRSDADLLRIINTPARGIGDTTVERLTTHADHQGISLYEAIAQPEQIPALNSAAVRRL 469

Query: 482 QHVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             V   +  L   AQ           +L   +  +   +   +E     + L EFL    
Sbjct: 470 AGVHTLLASLNSFAQGAKDAASAVDEMLRETRLVESLTAEGSDESLTRAENLREFLGAAQ 529

Query: 538 RNEQNSY----------------------------SSLQELISELEQYPPTIKRAHSANH 569
             + N                              + +  L S LEQ             
Sbjct: 530 EFDLNRAAASVAAAAAVPAEPEEPLPADLDAAPLSADVPPLQSFLEQISLVGDADAEVGE 589

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            +V +MT+H AKGLE   VFL      VF H                             
Sbjct: 590 GKVALMTLHAAKGLEFDAVFLTGMEDNVFPHSRALVGEDPDEG----------------- 632

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                           E  RL YVG TRA  +L +      S   +         + D  
Sbjct: 633 ------------EEMAEERRLCYVGFTRARRRLFVSLAQCRSLFGELRYNPPSRFLRDVP 680

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                +              +A    ++  +++P 
Sbjct: 681 PTLFGIDPSVQEAPRPVAAPVAPRRRSYEDDDSPR 715


>gi|219848809|ref|YP_002463242.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
 gi|219543068|gb|ACL24806.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
          Length = 742

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/630 (16%), Positives = 200/630 (31%), Gaps = 121/630 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           Q+   ++ +    +N+K    +  L        ++ D     +  +       +     A
Sbjct: 120 QERLLKRVLRELNLNEKQHLPRAILSAISHAKNELVDPEEFARHAR--TYFDEIVARCYA 177

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+    ++  LDF+DL+  T  L         +  +  Q    +L+DE QDT+  Q+ +
Sbjct: 178 RYQALLYESNALDFDDLLGETVRLFSNYPA---VLAEYHQRYRFLLVDEYQDTNRAQYLL 234

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           +R+L E            R LF VGDE QSIY++ GA+ + +L+ +              
Sbjct: 235 VRALAE----------RDRNLFVVGDEAQSIYAWRGADIRNILQFEHDYP--------DA 276

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
           ++I L  ++RST  IL     + +     +          +   +  G    V L+    
Sbjct: 277 TVIMLEQNYRSTQAILDAAQALINASPQRK--------YAKRLWTTNGTGDQVVLY---- 324

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                                 + ++    A      I  +I   T          +  D
Sbjct: 325 ----------------------EAANDEDEAAFAVSEIMRLIAEGT---------ARPGD 353

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             ++ R    + L+            +           +   +KD++A  R + +  D +
Sbjct: 354 CAIMYRMNAQSRLVEEAL----IQSHLPYQVIGGVRFYERKEVKDVLAYLRLVANPYDSV 409

Query: 436 SFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGIS---------KFQHVI 485
           S   ++  P     E  + + +         +Y+ + + A+                   
Sbjct: 410 SLQRVINWPGRGIGERTVNELLVWATRLGVPLYQALSELADETTEYPFAARARNALLDFY 469

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQF----ISRFGNEVIDVLDEFLNFTLRNEQ 541
           + I E   + Q     +    +L   + +        +    +    + E  N  +    
Sbjct: 470 RLIGEFHSLRQRMPLGELIDYLLMRIEAQATLYQEYEAEEAEDRWRNVQELRNAAINYAN 529

Query: 542 NSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                 L   + ++     T       N++ V  +T+H AKGLE P VF++     +  H
Sbjct: 530 LPIEHQLAAFLEDIALVADTDTLDR--NNDVVTCITLHQAKGLEFPYVFVLGVEEGLLPH 587

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                   ++  EE  RLLYVGMTRA  
Sbjct: 588 SRSTN----------------------------------DRNQLEEERRLLYVGMTRAQR 613

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           +L +   +  +   +    +    + D   
Sbjct: 614 RLYLSYAAQRAMFGRVTVCSRSRFLADIPP 643


>gi|218528416|ref|YP_002419232.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
 gi|218520719|gb|ACK81304.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4]
          Length = 795

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/606 (16%), Positives = 189/606 (31%), Gaps = 114/606 (18%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+        +DF DL++    L ++      I         +IL+DE QDT++ 
Sbjct: 212 QLYAAYQARLATLNAVDFGDLLLLCLKLWRENPD---ILANYQDRFRYILVDEYQDTNVA 268

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          + + +  VGD+ QSIY + GAE   +LR +          
Sbjct: 269 QYLWLRLLAQ----------ARKNVACVGDDDQSIYGWRGAEVDNILRFEHDFP------ 312

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +++ L  ++RST  IL     + +  E   G +                       
Sbjct: 313 --GATVVRLERNYRSTGHILAAASGLIAKNEGRLGKTL---------------------- 348

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  + T  +DS  +       AR++A +I ++               
Sbjct: 349 ------RTEDEAGEPVTVTGSWDSEEE-------ARQVAESIESLQRRGHAL-------- 387

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VLVR       I            +           +   I+D +A  R  ++ 
Sbjct: 388 --SEIAVLVRISAQMREIEDRF----VQVGLPYRVIGGPRFYERAEIRDALAYLRVTMNG 441

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQHV 484
            DDL+F  +  +P     +  +  +    R +   +    +K       K       + +
Sbjct: 442 ADDLAFERIFNTPKRGLGDATLQTLHTQARADRIPLLAAARKLIETDELKPRARSMLRGL 501

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           ++     + + +     +    IL      + +      +    L+    F    E+   
Sbjct: 502 VESFTRWVRLVETKPHPEVAQTILEESGYTEMWQKDRSADAAGRLENLKEFVRSMEE--- 558

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               ++ + LE     ++ + +   + V +MT+H AKGLE   VFL      +F ++   
Sbjct: 559 --FPDMAAFLEHVSLVMEASEAEGADRVSLMTLHAAKGLEFDTVFLPGWEDGLFPNQR-- 614

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                          I    ++  EE  RL +VG+TRA     +
Sbjct: 615 ------------------------------AIDESGRAGLEEERRLAHVGLTRARKLAKL 644

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               N       +       + +       V +     S     +            TP 
Sbjct: 645 SFAVNRRIHGLWSSTIPSRFIDELPPQAVDVVEAPAHFSAGASRFDRNPTPFGSSYGTPG 704

Query: 725 EREETI 730
            +    
Sbjct: 705 WQRAQA 710


>gi|189351901|ref|YP_001947529.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616]
 gi|189335923|dbj|BAG44993.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616]
          Length = 695

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 106/613 (17%), Positives = 195/613 (31%), Gaps = 128/613 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPTELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYQLLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S   +              
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEHGM-------------- 319

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                             + T+  D           A  + +          + ++  +R
Sbjct: 320 --------------GDAITVTACND-------EEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   I   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQIEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 466 MFCDFIQRLTERADKEPASVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E + + +   L          ++             + + VR+ TVH 
Sbjct: 526 KGTKPETEAVDGEADGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVHA 585

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+             +   PI                   
Sbjct: 586 SKGLEYPHVFLVGVEEGIMPHR----------GGSEDDGPI------------------- 616

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL+YV +TRA   L +         +++        + +   +D      +
Sbjct: 617 DDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETVVCEPSRFIPEMGLDDAPPPTPE 676

Query: 700 LTNSINKDEWIAY 712
                 KD   + 
Sbjct: 677 EAPMTPKDRLASL 689


>gi|320088329|emb|CBY98089.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 674

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/670 (15%), Positives = 216/670 (32%), Gaps = 121/670 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           ++ I  L       +  D    I       +   S    E  +  +++  ++        
Sbjct: 460 LEEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 664

Query: 720 ENTPLEREET 729
                +R ++
Sbjct: 665 AMMAAKRAKS 674


>gi|285016934|ref|YP_003374645.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283472152|emb|CBA14659.1| probable atp-dependent dna helicase protein [Xanthomonas
           albilineans]
          Length = 733

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 101/581 (17%), Positives = 192/581 (33%), Gaps = 126/581 (21%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   +   +     +   +   A Y+E   +  ++DF +L++  ++LL+       +   
Sbjct: 154 RRAQHIQPEPHDVWINTLRNAYALYQERCDRAGLVDFAELLLRAHELLRDTPA---LLAY 210

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  IL+DE QDT+ IQ+  +R L  D             +F VGD+ Q+IY + GA
Sbjct: 211 YRARFAEILVDEFQDTNAIQYAFVRVLAGD----------SGRVFVVGDDDQAIYGWRGA 260

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + V R  +               I L  ++RS+A+IL   + V +   +  G      
Sbjct: 261 KVENVQRFLKDFP--------GAQTIRLEQNYRSSANILNAANAVIAHNPDRIGK----- 307

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           QLW           + +     + ++ + +       AR +   
Sbjct: 308 ----------------QLW-------TDSGDGEPIDLYAAYNEVDE-------ARYVLER 337

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               +                 +  VL R    +          +    +          
Sbjct: 338 ARQWVRDGG----------SYSEAAVLYRSNAQSRAFEEALLAEQ----VPYRVYGGMRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQ 471
            +   IKD +A  R + ++ DD +F   + +P     +  + ++    R ++ +++   Q
Sbjct: 384 FERAEIKDTLAYLRLVANRADDAAFERAVNTPARGIGDRTLDEVRRLARVQSLSLWTAAQ 443

Query: 472 -------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---- 520
                  + A    +     +  I +L+      S  +    +L     R  +       
Sbjct: 444 HAAQQGGELAARARNALGQFLGLIEQLVLEVADLSLPEQIDHVLARSALRDHWSKESRSG 503

Query: 521 -FGNEVIDVLDEFLNFTLRNEQNSYSS--------LQELISELEQYPPTI-KRAHSANHN 570
                  D LDE ++   R  +             + EL++ L        +    A+ +
Sbjct: 504 LDSESRTDNLDELVSVASRFVRVDAEDDADEARQAMSELVAFLAYAALEAGEGQARADED 563

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V++MT+H+AKGLE P+VFLV     +F                                
Sbjct: 564 GVQLMTLHSAKGLEFPLVFLVGMEDGLFPS------------------------------ 593

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                    +    EE  RL YVG+TRA   L++    +  
Sbjct: 594 ----ARSLEESGRLEEERRLAYVGITRARHTLVLSYAESRR 630


>gi|197364702|ref|YP_002144339.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197096179|emb|CAR61775.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 674

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/670 (15%), Positives = 214/670 (31%), Gaps = 121/670 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L  +++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTLVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPCRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 664

Query: 720 ENTPLEREET 729
                +R ++
Sbjct: 665 AMMAAKRAKS 674


>gi|254362549|ref|ZP_04978650.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213]
 gi|153094150|gb|EDN75046.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213]
          Length = 1174

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 129/875 (14%), Positives = 251/875 (28%), Gaps = 128/875 (14%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
            L K+Q      ++RF            L   K   A Y   K+ +    F+DL+   N  
Sbjct: 314  LAKNQAFLTAYKERFENSLSAMLQYQFLIALKAKLAEY---KQSHPQRSFDDLLTMLNQA 370

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            LK       +  KI       +IDE QDT L Q+E+   +           ++      +
Sbjct: 371  LKNLHTGEALSQKIRAMYPFAMIDEFQDTDLTQYEIFSQIF-------MAENAENGFIMI 423

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD KQSIY F GA+    LR  +          Q      L  ++RS  +++  V+ +FS
Sbjct: 424  GDPKQSIYKFRGADIFTYLRAAK----------QADEQFTLGKNWRSLPEVVQAVNNLFS 473

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ- 338
               +      +                 +            Q   +Q  +  Y     + 
Sbjct: 474  FANDNSPFLYED----------------IGFHPVEADSQKGQLVSEQGHFVGYITENSKL 517

Query: 339  ESSASILARRIAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            +  A + A +I   +  M          G+ +   AKDI +LVRK      I    + L 
Sbjct: 518  DDLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQAKRIK---KALA 574

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                 SV   +   +       +L  L +  L+     + +  L S L+  +  +I    
Sbjct: 575  KRNIKSVYLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWGLTAAEI---- 630

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
             +  E E +++          + ++        ++ +             L   +   + 
Sbjct: 631  HRYKENEQLWDLKVNQFVEYSNIWKE-----QGVLPMLHKIYLEQGIIERLKGLENADRL 685

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIM 575
            I+         L E L  T +  ++    L+    ++         +    +    ++I+
Sbjct: 686  ITDLL-----HLTEILQETSQALESEAELLRWYEKQVNSPDFNDEQQLRLESEEELIKIV 740

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGL+ P+V+L     +              S                      + 
Sbjct: 741  TIHGSKGLQYPIVWLPFVSQKSEGDTQTALSLYRNSQGALDWCL-----------GSEEA 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY--------D 687
               L+     E  RLLYV +TRA  QL +      S     +       +          
Sbjct: 790  SFSLQYEAYAEDLRLLYVALTRAESQLNLVLPKEISGWSPLHYLLADGEIPTGKVPVSDY 849

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                      +++   +    W   + S  +   T       + Q+     +  +     
Sbjct: 850  FSQKRIAANLVEVAGELPFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFS 909

Query: 748  KNDINEPYILNPS--------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            +        L                 +T   S          G ++H   +      + 
Sbjct: 910  EGKSERVMDLAQDRDVHIETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQI 969

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSG 853
             R+                +  +   L   R+L  P+      +         +E     
Sbjct: 970  DREAVAKVC---EQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYL 1026

Query: 854  KINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKT-- 885
            ++   K                           +  + G +D I   ++  ++ +YK+  
Sbjct: 1027 RLKNDKALHQLNALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNF 1086

Query: 886  -HHHVPQEIEHI------PYTHIAQLSIYEKILKD 913
              +      +           +  Q  +Y   L  
Sbjct: 1087 LGYLPQNYAKEHIQREMGRQRYDLQYLLYTLALHR 1121


>gi|315638600|ref|ZP_07893774.1| ATP-dependent DNA helicase PcrA [Campylobacter upsaliensis JV21]
 gi|315481224|gb|EFU71854.1| ATP-dependent DNA helicase PcrA [Campylobacter upsaliensis JV21]
          Length = 677

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 105/610 (17%), Positives = 209/610 (34%), Gaps = 125/610 (20%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            + K        + +     K        +        +Y+    K   +DF+DL++ T 
Sbjct: 139 SRFKNMAFGVEDVFEEAKKLKKEGQEYEKVFKLATYYKNYQAYLLKYNFVDFDDLLLLTC 198

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            LL+  +       K      +I++DE QDT+ +Q ++++SL +          S   L 
Sbjct: 199 FLLEDEE----FAKKQSLIYRYIMVDEYQDTNFLQHQILKSLCK----------SHENLC 244

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIYS+ GA+ + +L  +   +           +++L  ++RS   IL   +++
Sbjct: 245 VVGDDDQSIYSWRGAKVENILNFQNEFEN--------VKLVKLEQNYRSVGTILKAANEL 296

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            S  +   G +                               ++   ++    +  D   
Sbjct: 297 ISHNQKRLGKTLI----------------------------CTKDEGEEIEICACEDERE 328

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           + +        +A  I +++             ++A +I VL R    +  +        
Sbjct: 329 ESA-------MVAKKIKSLLKQG----------VKADEIAVLFRVNALSRALEEAL---- 367

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI- 456
              +I  +        +   IKDL+A  R I + EDD SF  ++  P   F E  + K+ 
Sbjct: 368 MKEQIPYLLLSGMRFYERAEIKDLIAYLRLINNLEDDFSFKRIINRPKRGFGEVALQKLE 427

Query: 457 CTQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                   +++E +        F+    ++    ++ I  L  ++      D        
Sbjct: 428 NHALKHRISLFEALCNLEGSGAFSQKLQNELCDFVENIKSLRELSNLKDLIDGLDEKFKF 487

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANH 569
           K   ++     G + I  ++EF           +  +L+ ++SE+              +
Sbjct: 488 KDYYEK--QNDGEDKIANINEFCASLKDRINNENIENLETILSEISLLS-----EQDKAN 540

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           N + IM+VHT+KGLE   VF++      F   +                           
Sbjct: 541 NGICIMSVHTSKGLEFDYVFVIGLEMGFFPVGY--------------------------- 573

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                          EE  RL YV  TRA  +L +   ++  ++           + +S 
Sbjct: 574 ------------DNIEEERRLAYVAFTRAKKRLCLSYANSRFHQGSRAYLQKSCFLEESG 621

Query: 690 HNDERVKKIK 699
             +E +K  +
Sbjct: 622 VLNEEMKIEE 631


>gi|218780688|ref|YP_002432006.1| exodeoxyribonuclease V, beta subunit [Desulfatibacillum alkenivorans
            AK-01]
 gi|218762072|gb|ACL04538.1| exodeoxyribonuclease V, beta subunit [Desulfatibacillum alkenivorans
            AK-01]
          Length = 1167

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 127/973 (13%), Positives = 285/973 (29%), Gaps = 157/973 (16%)

Query: 17   YKDLWP------LPYFQVSDINKYVSLSMETGNPT--ILKKAQTLQQASQTQCIEERFSL 68
              D WP      L  F+  D+        ++G            LQ       +  +F  
Sbjct: 218  VADAWPANLDQVLAVFESGDLKANQYGKPDSGKAQVFAQAMDDYLQAGEPGFPLFPQFKY 277

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
              +  + +       I   +         ++L+++ +E  +  +++  Y   +       
Sbjct: 278  FCADTVQKAGKKGCEIPKLDFFNDC----QELQEAGEEMERELEQYLLYLDQE----VFR 329

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
             A+       E K    +  F DL++     L    +   +   + ++    LIDE QDT
Sbjct: 330  FAEKAEP---ERKTAKNIRFFNDLVLGFQKALSGP-MGPALADAVRKKYQAALIDEFQDT 385

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
               Q+++  +L              + LF +GD KQ+IY F GA+    L+  R  +   
Sbjct: 386  DAAQYDIFYNLFA---------GRRQALFLIGDPKQAIYGFRGADLFSYLQASRNVE--- 433

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                       L  ++RS+  ++  V+ VFS    A  L      ++R +          
Sbjct: 434  -------ESYSLENNWRSSPQLIRGVNAVFSRNPQAFVLDGIEFKSVRPKPG-------- 478

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA-RRIAYTISNMIGTDTIFSNGK 367
             +   +  +       +  +     D          +A R +A  +S ++G         
Sbjct: 479  -VNPALPLEKGQTPPLEIWAVAPKEDKAVTIGEVQNIAVRAVASEVSRLLGLGE------ 531

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                   DI VLVR       +    R       +  V N    L +     ++  +   
Sbjct: 532  ---YSPSDIAVLVRSNMQAQAVRDGLR----QAGVHSVLNRTGDLFETPEAVEIRRVMTA 584

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
              +     +    L      ++ +++ ++           E + +      S    + + 
Sbjct: 585  AAA-NRLQNVKAALSVSFLGWTAEELDRLAPG--------EEVVEKVLTLFSDLHEIWQK 635

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
               +     F    +  + +L   +G ++            +        + E+     +
Sbjct: 636  SGFMRMFTYFMHNKELPSAVLTLPEGERRLT---------NIMHLAEVLHQAEKERKLGV 686

Query: 548  QELISELEQYPP-------TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              LI  L++            +    ++   V+++T+H +KGLE PVVF      +    
Sbjct: 687  SGLIKWLDRQMDLSSPRKDEHQLRLESDAQAVQVVTMHGSKGLEFPVVFCPFMWQESEPR 746

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            K        P  ++   + +    S           +  K     E  RL YV +TRA D
Sbjct: 747  KGTPLTFHDPDQDERLTLDLRAEDSPH--------REQAKLENVAENVRLAYVALTRAKD 798

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK---DEWIAYEWSTH 717
            +  +   +    +  +     +    +    + R+    L   + +       A   +  
Sbjct: 799  RCYMLWGAINKAQTSAPAYLLHGGAVNDGRVEIRLNYKTLFEDLEELAKGAENAIALTLP 858

Query: 718  HPENTPLEREETIKQLM-------DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN- 769
              E  P                      +   + S     +++P    P   +       
Sbjct: 859  PEEIYPAAFAAGGANPALEALEFKARPDLTWSVTSFSALSMDQPGRNEPGADEAAAPGPQ 918

Query: 770  ----------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                         + +  +    G+++H + + +  L    +K             +  +
Sbjct: 919  VEIEDEPEEEAADIFAFPRGIGPGIMLHDIFENLDFLDHAPKKVLDLVQDKLEVYGFEDQ 978

Query: 820  EYKNLLLSITRLL--------------------ENPMMTTAMSCDSYSEVSVSG------ 853
              + +   +  +L                     +  M         +  +  G      
Sbjct: 979  WAQPVAGMVQNVLFCPLEKERPDFTLSRIPMTARSNEMEFYFPIKKITPKAFEGIFGNGL 1038

Query: 854  ------KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY--------- 898
                  +++       + G +D +       +I ++K++H      ++ P          
Sbjct: 1039 PKDRPDRLHFSPVKGFVHGFMDMVFCFDGRYYIVDWKSNHLGNAPEDYGPESLAHAMVHH 1098

Query: 899  THIAQLSIYEKIL 911
             +  Q  +Y   L
Sbjct: 1099 KYDLQYLLYTLAL 1111


>gi|308177921|ref|YP_003917327.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745384|emb|CBT76356.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117]
          Length = 1105

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 130/959 (13%), Positives = 262/959 (27%), Gaps = 192/959 (20%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            DL E+L+    +  K +            LAS      L   Y   KK+  V+D+ DL+ 
Sbjct: 195  DLVERLRTLPMDAEKPKKTTQAAIKLIDKLASRATIAELAEEYASEKKRLGVMDYGDLVA 254

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            +   + ++   +A            +L+DE QDTS  Q  +   L               
Sbjct: 255  HAARIAQEVPAAAL---AERASHKVVLLDEFQDTSHAQMVLFSQLYGQ----------GH 301

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             + AVGD  QSIY F GA   ++ R   +      N      +  L +++R+T ++L   
Sbjct: 302  PVTAVGDPNQSIYGFRGASAGQLFRFPEVFPINGENRNDVAHVKHLTIAWRNTVNVLAAA 361

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + + +     QG      +     SS   + G V L      + +++             
Sbjct: 362  NSITAAAPQHQG----PVSVKPLDSSAHAKPGRVVLNRCATVREEAEAIA---------- 407

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                                       + +   ++  + K   VL R R    ++  +  
Sbjct: 408  --------------------------EMIAAENRKAAEPKTSAVLSRNRTQLSIMGEVLA 441

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                   I         L     + DL++    ++        + +L    +     D+ 
Sbjct: 442  E----RGIKYQLVGLSGLLSTPELTDLVSYLHVLVDPLRSDKLMRILAGARWRLGTADLM 497

Query: 455  KI------------------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
                                        +  + +++ A   ++    +++ +  L     
Sbjct: 498  AFADWSRQLERRRAHGLQSTPAADESASSDEDVLKEAARAELNDAASLVEALDFLPKEGW 557

Query: 497  FCSP--------HDFFTLILGAKKGRQQFISRF-------------------------GN 523
              S         ++    +     G +   +                            +
Sbjct: 558  TSSDGRTISPAGYERLAALRDELAGLRLLANDDLETLIRETERAMNLDIEVAARPWISRD 617

Query: 524  EVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIK----RAHSANHNEVRIMTVH 578
            +    LD F +      +N+    L   +  LEQ     K     +  A+ + V+++TVH
Sbjct: 618  KARANLDAFADVVREYCRNAPRVELAGFLMWLEQAAEKEKGLPLPSEDADPSAVQLLTVH 677

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDDPGIPIWIPQSKSRNNIV 632
             +KGLE  +V ++     VF      +              D   +P W     +   ++
Sbjct: 678  ASKGLEWDIVAVMTLNDGVFPGSKSDRWTSGDKALPWELRGDHKDLPQWDTDQPTLKELL 737

Query: 633  SD---LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY------- 682
                     ++     E  RL YV +TRA   LI      TS   K    + +       
Sbjct: 738  EAESIFKDRVEDHHIAEERRLAYVAVTRAKSLLICSSSVWTSTRTKPTAPSEFFNCLVPL 797

Query: 683  -----------------DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT--- 722
                             D    +      ++ +   + +           T HP +    
Sbjct: 798  AEGENPQAEIGVWVEDEDAPEQNPSTLTPLEAVWPYDPLEGPVITGGVQKTPHPYSRREV 857

Query: 723  -------------------------PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
                                       E  + + Q        +++ +P     +    L
Sbjct: 858  IAEMAKNLEVVSQEHEPLTSFGQQWAEEAGKLLGQREFLAGRERRIEAPEHVRASLFVEL 917

Query: 758  NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                ++                  RG   H  ++        K          + A  + 
Sbjct: 918  AEDPVEVLENLRRPVPRRPGLAARRGTAFHAWIEEF----YEKTSMLDLGDLQEPADGYL 973

Query: 818  AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQ 876
             +    L       L +                V   +      + + GRID +      
Sbjct: 974  DEALD-LESMKEAFLSSEW-------SKLQPAYVEVPLETRVGPVAVRGRIDAVFQMEDG 1025

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVF 933
               + ++KT      +        + QL++Y       +  P + +     YV+     
Sbjct: 1026 TWLMLDWKTGRVPSGKDLKSK---LVQLAVYRLGWSRLHGIPLEEIKAAFYYVAAGITI 1081


>gi|70733315|ref|YP_263089.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens Pf-5]
 gi|68347614|gb|AAY95220.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens Pf-5]
          Length = 669

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/634 (15%), Positives = 205/634 (32%), Gaps = 125/634 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   K    +DF
Sbjct: 129 DDGVDEIKNMIGSWKNDLILPAEALENARNPKE-----QTAAIVYTHYQRTLKAFNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L          
Sbjct: 184 DDLILLPVKLFEEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKMLIG-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                    VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 233 --KRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + S   +                         QLW ++    +          
Sbjct: 283 ILRCANVLISNNPHEFEK---------------------QLWSEMGHGDEI--------- 312

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +    A R+A  I ++           +      D  +L R      LI
Sbjct: 313 -----RVIRCRNEDAEAERVAMEILSLH---------LRTDRPYSDFAILYRGNYQAKLI 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     +++    +          +KDLMA  R I++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    +     +++  +        P  
Sbjct: 415 STTLEKLGNYATERKISMYAATDEIGLGEHLDSRFTDRLARFKRFMDRVREQCAGEDPIS 474

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDV---------LDEFLNFTLRNEQNSYSSLQELISE 553
               ++          +   ++             ++   N   ++E    +    +   
Sbjct: 475 ALRSMVMDIDYENWLRTNSSSDKAADYRMGNVWFLIEALKNTLEKDEDGEMTVEDAIGKL 534

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           + +     ++        V++MT+H +KGLE P VF++    ++  H             
Sbjct: 535 VLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH------------- 581

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L     +     
Sbjct: 582 ----------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQY 619

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            +         + +   +D   +    T +  K 
Sbjct: 620 GEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKA 653


>gi|219848623|ref|YP_002463056.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
 gi|219542882|gb|ACL24620.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485]
          Length = 646

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 110/639 (17%), Positives = 200/639 (31%), Gaps = 121/639 (18%)

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEIN--KKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
           E R    ++ F       Q  +  + +    ++P    +  +      + + R  T ++ 
Sbjct: 100 EGRLKGYTASFSIYAGDEQLQLAAEALAGVSETPPRMIEADEVLRLISRAKSRMLTPRLM 159

Query: 121 KS--TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
               T             Y+ A ++   LDF+DLI+    LL +      +     Q   
Sbjct: 160 ARFATDPLDRFVAACYRRYQRALEQANALDFDDLILTAYRLLSEDHD---LLATYQQRWP 216

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           H+L+DE QDT   Q  +I  LT        T   PR+LF VGD  QSIY F  A+   + 
Sbjct: 217 HVLVDEYQDTDPSQHALIELLTR------PTAHRPRSLFVVGDAMQSIYGFRNADHNIIN 270

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
           R                 +IEL  ++RS   IL     +     +   +   +  T+   
Sbjct: 271 RFTVDFP--------DAQVIELTTNYRSRQPILDAAYAIIRHSRSVSPMELRAAATVA-- 320

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                                + +   +   A ++A +I+ +  
Sbjct: 321 -------------------------------AERSVLISEAKDSREEAEQVARSIAELQR 349

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                        + +++ VL R R  +  +    R      ++  V        D   +
Sbjct: 350 QGR----------RLREMAVLYRTRHMSRPLEQALR----HARLPYVVRGSVSFFDRAVV 395

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQ 471
           +D +A  R I +  D+LS   +   P        +  I      ++  + E       I 
Sbjct: 396 RDAIAYLRCIANPADNLSLTRIANVPARGLGGQALATIAAFASAQSIPLSEALGHAPVIP 455

Query: 472 KFANCGISKFQHVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFG----NEVI 526
           + +   +   + +   +     +A     P      +L           RF      E  
Sbjct: 456 RLSPRAVEGARRLFALLQRWRRLATGTMPPDHLLADVLEQSGYMAALAERFDAEELAEAR 515

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             L E L     + +     L   + E+     T         + V+++T+H AKGLE P
Sbjct: 516 AHLQELLRAAEEHTE-----LSAFLQEIALM--TNADDDDDERDRVQLLTIHAAKGLEWP 568

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V        H+                                           EE
Sbjct: 569 FVFVVGLEEGTLPHERSLGDPS----------------------------------ALEE 594

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             RL YV  TRA+++L +   ++ +  ++     + + V
Sbjct: 595 ERRLCYVAFTRAAERLYLSWTASRNRGQRLKPSRFLEEV 633


>gi|317502900|ref|ZP_07960997.1| ATP-dependent helicase [Prevotella salivae DSM 15606]
 gi|315665983|gb|EFV05553.1| ATP-dependent helicase [Prevotella salivae DSM 15606]
          Length = 1075

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 126/895 (14%), Positives = 285/895 (31%), Gaps = 98/895 (10%)

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
             Q+    +   + +S        P+K ++ ++     P         Q+  I    +   
Sbjct: 263  LQSGDFTDDERVFNSTAQGASENPEKWVVKKKAIVGEPIYDLVCSTLQEILITTERKRKL 322

Query: 117  YKMFKSTLAS-------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVS 166
                  +++        L L   +    EE   +        ++ +T  LLK     + S
Sbjct: 323  QSRLFKSVSLTLKHINQLRLLDSIGDKVEELNLELNRF----MLSDTQTLLKSMIGENDS 378

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +I  KI  ++++I+IDE QDT  +QWE  + L  +     + +        VGD KQSI
Sbjct: 379  PFIFEKIGAQLHNIMIDEFQDTGSVQWENFKVLLLETMSHDSNN------LIVGDVKQSI 432

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y +   + + +   +   ++       + +I  L ++ RS  +I+T  +  F        
Sbjct: 433  YRWRSGDWRLLNDIEGQFKEH------EITIKPLQVNRRSERNIITFNNTFFQ------- 479

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ--CNPQQESWTSYFDSLPQESSASI 344
                      +   +       +L ++  +        + ++                  
Sbjct: 480  ----EAVRQEYEQLKQDIGDEAELLQKAYADVTQDIPSDKKEVGIVEVELLPNTPEYEEE 535

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              ++IA  + +++             ++  DI ++VR   D   I      +KN  ++ +
Sbjct: 536  THKKIADKVQHLLDNG----------VRENDIAIIVRYNSDIERIGEYF--MKNKPEVHL 583

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
            +  + F L    A+  ++   + + +  DD++   + K  +    ++++           
Sbjct: 584  ISEEAFHLDASQAVNIIINAMKVLNNPNDDIAQAALTKLYIKAIKDNNL------TDNNI 637

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
             + +   K                + L  +    S  D    I      R   + +   +
Sbjct: 638  LLKDKSLKDCLP-----PQFFNQENHLRGL----SLIDMAEEI-----YRIFELQKLSGQ 683

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +  F +      Q+    L   + +            S++   + + T+H +KGLE
Sbjct: 684  -TAYICAFYDKLNEYMQDGIPDLHGFLEQW-TDNIHKCSIQSSSKKGISLYTIHKSKGLE 741

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V +     ++     I     +   N  P +P+   +   +N+I      H      
Sbjct: 742  FDHVIVPFCNWELEKRDVIWCEPDVEPFNALPIVPVSFSRKLMKNSIYEKDYAHEHFLNI 801

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             +   LLYV  TRA   L +        + +S       ++ +S          +   + 
Sbjct: 802  VDNLNLLYVTFTRAGRGLYVYGKRGDKGQGRS------WVIENSLGAVANQLNAEYDATK 855

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
             KDE I + +           ++ T        +  +      +N +            +
Sbjct: 856  EKDEEILFTYGNESSLVNNRVKKATKNIFEQTAEDIEIAIDNYENIVEFKQSNKSKEFVS 915

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                + E           G ++H +   I    +      +     +            L
Sbjct: 916  DDNASDEESTKRQSYIKLGSVLHAVFSTI--KTKDDVNKALNDLEAEGILYDKIITQDRL 973

Query: 825  LLSITRLLENPMMTTAMSCD--SYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFI 880
               IT  L +P + +  S     ++E S+     +    ++     R D++      + +
Sbjct: 974  HKLITDRLNDPRVASWYSNQWTLFNECSILKLNTLTDKVEER----RPDRVMFDGNEMIV 1029

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             +YK               H +Q+  Y  +L +    K++   L Y+   K+  +
Sbjct: 1030 VDYKFGVP--------KEEHQSQVKEYMNLLSEM-GYKNITGYLWYLFSNKMIKL 1075


>gi|229593328|ref|YP_002875447.1| ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
 gi|229365194|emb|CAY53470.1| ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25]
          Length = 669

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 97/648 (14%), Positives = 205/648 (31%), Gaps = 125/648 (19%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
             +    ++K  +   +++ I         +  K        A  +  HY+   K    +
Sbjct: 127 AGDDGVDEIKNMIGAWKNDLILPAQALENARNPKE-----QTAAIVYTHYQRTLKAFNAV 181

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI+    L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L        
Sbjct: 182 DFDDLILLPVKLFEEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKMLIG------ 232

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST
Sbjct: 233 ----KRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRST 280

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           + IL   + + S   +                         QLW ++    +        
Sbjct: 281 SRILRCANVLISNNPHEFEK---------------------QLWSEMGHGDEI------- 312

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   + +  +    A R+A  I ++           +      D  +L R      
Sbjct: 313 -------RVIRCRNEDAEAERVAVEILSLH---------LRTDRPYSDFAILYRGNYQAK 356

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           LI    +     +++    +          +KDLMA  R I++ +DD +F+ ++  P   
Sbjct: 357 LIELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVINVPRRE 412

Query: 448 FSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSP 500
                + K+         ++Y    +             +     +++ ++        P
Sbjct: 413 IGSTTLEKLGNYATERKISMYAATDEIGLGEHLDTRFTDRLSRFKRFMDKVREQCAGEDP 472

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDV---------LDEFLNFTLRNEQNSYSSLQELI 551
                 ++          +   ++             ++   N   ++E    +    + 
Sbjct: 473 ISALRSMVMDIDYENWLRTNSSSDKAADYRMGNVWFLIEALKNTLEKDEDGEMTVEDAIG 532

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             + +     ++        V++MT+H +KGLE P VF++    ++  H           
Sbjct: 533 KLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH----------- 581

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                      ++  T EE  RL YVG+TRA   L     +   
Sbjct: 582 ------------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRK 617

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
              +         + +   +D   +    T +  K        +    
Sbjct: 618 QYGEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 665


>gi|16767188|ref|NP_462803.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161617030|ref|YP_001590995.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167553318|ref|ZP_02347068.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994608|ref|ZP_02575699.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168234233|ref|ZP_02659291.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168244964|ref|ZP_02669896.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168263196|ref|ZP_02685169.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168467671|ref|ZP_02701508.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168822967|ref|ZP_02834967.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194447607|ref|YP_002047933.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194468767|ref|ZP_03074751.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197251744|ref|YP_002148842.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197264134|ref|ZP_03164208.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198245972|ref|YP_002217850.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388093|ref|ZP_03214705.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207859124|ref|YP_002245775.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238912922|ref|ZP_04656759.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|17865672|sp|Q9L6S1|REP_SALTY RecName: Full=ATP-dependent DNA helicase rep
 gi|6960284|gb|AAF33474.1| 96% identity with E. coli ATP-dependent DNA helicase (REP)
           (SP:P09980); contains similarity to Pfam family PF00580
           (UvrD/REP helicase), score=817.3, E=5.5e-242, N=1
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16422480|gb|AAL22762.1| rep helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|161366394|gb|ABX70162.1| hypothetical protein SPAB_04858 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405911|gb|ACF66130.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194455131|gb|EDX43970.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|195629985|gb|EDX48645.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197215447|gb|ACH52844.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197242389|gb|EDY25009.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197940488|gb|ACH77821.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605191|gb|EDZ03736.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205322218|gb|EDZ10057.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327553|gb|EDZ14317.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205331806|gb|EDZ18570.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205336232|gb|EDZ22996.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340705|gb|EDZ27469.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205348144|gb|EDZ34775.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206710927|emb|CAR35293.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261249041|emb|CBG26901.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301160433|emb|CBW19962.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312915036|dbj|BAJ39010.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225438|gb|EFX50495.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322612996|gb|EFY09947.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617416|gb|EFY14316.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625592|gb|EFY22414.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627015|gb|EFY23808.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631269|gb|EFY28032.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638302|gb|EFY35001.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642848|gb|EFY39434.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646996|gb|EFY43498.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650384|gb|EFY46797.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656326|gb|EFY52620.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657551|gb|EFY53821.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665962|gb|EFY62143.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666701|gb|EFY62878.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671056|gb|EFY67186.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322679237|gb|EFY75289.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681641|gb|EFY77668.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686032|gb|EFY82020.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192658|gb|EFZ77886.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197835|gb|EFZ82966.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203724|gb|EFZ88745.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205401|gb|EFZ90375.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210772|gb|EFZ95648.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215938|gb|EGA00671.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221431|gb|EGA05849.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227331|gb|EGA11498.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231736|gb|EGA15847.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236151|gb|EGA20228.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239612|gb|EGA23660.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244292|gb|EGA28300.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249611|gb|EGA33523.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250297|gb|EGA34183.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256504|gb|EGA40235.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323259798|gb|EGA43431.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265206|gb|EGA48704.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268365|gb|EGA51837.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 674

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/670 (15%), Positives = 215/670 (32%), Gaps = 121/670 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 664

Query: 720 ENTPLEREET 729
                +R ++
Sbjct: 665 AMMAAKRAKS 674


>gi|302188703|ref|ZP_07265376.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            syringae 642]
          Length = 1230

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 126/1007 (12%), Positives = 280/1007 (27%), Gaps = 163/1007 (16%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +     E          LT +   +        +           ++  +    
Sbjct: 272  EKLAAWAADDTQEALDLGTGFTRLTPEGIAEAWKSDPPAHPAF--------EAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDGLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HGAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEANDEQIGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E  +     
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVDSVNHVFTRAEQREQGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA   A
Sbjct: 485  FLFRDEQGNQVPFSDALAQGRKETLHVDGAPLTALTVWHLQSDQPVSGVVYRQQLAASCA 544

Query: 351  YTISNMIGTDTIFSNGKK------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++        G        R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQDRAGFVTPDNALRGLRPADIAILVRDGKEAQAVRQQLTA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ + +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWERRVMQFRGYRTIWRSQGVLPMLRRLLHDFALPQTLMTRNDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +            +S+        LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADG----------KSQISLQPTEALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      +        +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNANTSMLHRSALGYLLGGGAALAESAEL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN--- 749
            +   +D     E     P   P +   +  +             +       +       
Sbjct: 877  SVWLRDLAQGGEAIALQPVPEPTDEHFSAPRNAAALVKLLVPKRRAAENWWIASYSALRI 936

Query: 750  -----DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  -------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-MMTTAMSCD 844
                   +      K ++ +   C +      A     L   +  +L  P  ++   +  
Sbjct: 997  AGNEGFAMTAHAPDKLQDAVARRCNRRG---WAGWINTLSDWLQHMLNMPMRLSPDAAPV 1053

Query: 845  SYSEV------SVSGKINCPKKDI-----------------------------IISGRID 869
            + SE+       V  +      ++                             +  G ID
Sbjct: 1054 ALSELDQPNQYRVEMEFWFASNNVNVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFID 1113

Query: 870  QISISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS------ 914
                 +   ++ +YK++     +  +         +   +  Q  +Y   L         
Sbjct: 1114 LTFEHEGRYYVADYKSNWLGSDDSAYTQLAMETAILDNRYDLQYVLYLLALHRQLKTRMA 1173

Query: 915  ---YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
               Y       L +++           F  P  +L ++   +    P
Sbjct: 1174 DYDYDQHMGGALYLFLRGSRSASQGAYFTRPPRELIESLDLLFQGKP 1220


>gi|288937796|ref|YP_003441855.1| ATP-dependent DNA helicase Rep [Klebsiella variicola At-22]
 gi|288892505|gb|ADC60823.1| ATP-dependent DNA helicase Rep [Klebsiella variicola At-22]
          Length = 673

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/654 (15%), Positives = 208/654 (31%), Gaps = 121/654 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVVLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+A           + ++        K
Sbjct: 305 ------------ELGYGAELKVLSANNEDHEAERVA---------GELIAHHFINKTNYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +   +        +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        + ++               G         +
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMGRNKGLFTASFDMGLSQTLTGRGYESLTRFTHW 459

Query: 488 IHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +A+        D    I       +   S    E  +  +++   +        
Sbjct: 460 LREIQQLAEREPVNAVRDLIRGIDYESWLYETSPSPKAAEMRMKNVNQLFTWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V+LV     +  
Sbjct: 520 EIDEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVYLVGMEEGLLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +L            +  +      + +   +D   ++ +   S  +       
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVISAEERMHKGQA 658


>gi|218671674|ref|ZP_03521343.1| probable ATP-dependent exonuclease V protein, nuclease and helicase
           domains [Rhizobium etli GR56]
          Length = 464

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 179/466 (38%), Positives = 266/466 (57%), Gaps = 12/466 (2%)

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            +  G  G V LWE V      +   ++E WT+ FD+ P+ + A+ILARRIA++I  ++G
Sbjct: 7   PAASGHPGAVDLWEMVAP----EAVVKEEDWTAPFDATPESAPAAILARRIAHSIGALVG 62

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +TI   GK+R+I+A DILVLVRKR     +  LTR LK    I V G DR +LT H+A+
Sbjct: 63  RETIVDKGKERLIEAGDILVLVRKRD--AFVNALTRALKRRGDIPVAGADRLVLTSHIAV 120

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           +DL+ALGRF+L  +DDLS   +LKSPLF+ SE+DIF     R + E+V+ +++KFA  G 
Sbjct: 121 QDLLALGRFLLLPQDDLSLAAVLKSPLFDLSEEDIFAAAALRGDNESVWSHLKKFAADGN 180

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            +F+  ++ +   +  ++  S HDF+  +LG+  GR+QF++R G EV D+LDEFL FTL 
Sbjct: 181 ERFRAAVEKLELFLRQSKNLSVHDFYARLLGSHGGRRQFLARLGTEVSDILDEFLTFTLD 240

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +E +    LQ  +S LE   P +KR      NEVRIMTVH +KGLE+P+VFLVD GS+ F
Sbjct: 241 HESSGLPGLQSFVSTLELEAPEVKREQDKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAF 300

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
           +H H+ K+ ++ +  D+P +P W+P +   N++  +    ++   +EEY RLLYV MTRA
Sbjct: 301 THTHLPKLRLIETDPDEPPMPAWVPVADLANSLTQNDAARIQILAEEEYRRLLYVAMTRA 360

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
           +D+L++C +        S        + +   + E              EW    W    
Sbjct: 361 ADRLVVCGYRGVRANNDSWHMMISTALSEGHPHVEAASFSD-----PDGEWPGIRWRVPR 415

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
            E    ER    +   +E+ +P  L  P+      P  L+PS   T
Sbjct: 416 VERR-FERISRSEARDNEEALPAGLLQPLPPQRELPRALSPSGAGT 460


>gi|221632334|ref|YP_002521555.1| ATP-dependent DNA helicase pcrA [Thermomicrobium roseum DSM 5159]
 gi|221156871|gb|ACM05998.1| ATP-dependent DNA helicase pcrA [Thermomicrobium roseum DSM 5159]
          Length = 771

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 103/641 (16%), Positives = 199/641 (31%), Gaps = 123/641 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A  +   Y +  ++   +DF+DL++ T +L  +      +         ++ +DE QD
Sbjct: 209 EVAARVYERYAQYLQRAQAVDFDDLLLRTVELFTEYPD---VLAHYQDRWRYLQVDEYQD 265

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q++++R L           S  R L  VGD  QSIYS+  A+ + +L  +R     
Sbjct: 266 TNRLQYQLVRQLA----------SGHRNLCVVGDPDQSIYSWRQADIRNILEFQRDFP-- 313

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I L  ++RST  I+   D V  +                           
Sbjct: 314 ------DATVIRLGRNYRSTPQIVAAADAVIRVNRQR----------------------- 344

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                  + +D           A  +   I  ++ T        
Sbjct: 345 -----IERPLWTENPPGPPIRLLACWD-------EQQEAEMVVSEIDRLVRTG------- 385

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + +DI VL R    +  +           +I           +   IKD +AL R 
Sbjct: 386 --NARYRDIAVLYRINAQSRSVEEAL----VRRQIPYQVIGGVRFYERKEIKDALALLRV 439

Query: 428 ILSQEDDLSFVCML--KSPLFNFSEDDIFKICTQRHETET-----------VYEYIQKFA 474
           +++  D LS   +L   +      E  + ++       +              E     A
Sbjct: 440 LVNPRDWLSLRRVLSETAFGRGIGEKTLLQLEQWGQRQQCSPADVLLLLVEEREEAPALA 499

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDE 531
              + + + +   +  L            F L L       ++         E  + L +
Sbjct: 500 AATVRRLRELGGELVRLRAAMVEHPASQLFDLALERSGLAARYRDASDPTERERWENLVQ 559

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFL 590
             +   R +     + + L   LE+         +  + ++V ++T+H AKGLE PVVFL
Sbjct: 560 LRSVLERYDT--VPAAEGLPLFLEEAALVAAIDEAEMSGDQVTLLTLHAAKGLEFPVVFL 617

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     +  H                                        ++  EE  RL
Sbjct: 618 IGVEEGLLPH----------------------------------ARALESEAELEEERRL 643

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            YVG+TRA ++L +  + ++ N     +R       D    D      + +  + +    
Sbjct: 644 FYVGITRAKERLYLS-YCSSRNRFGLRERCLPSHFLDDLPPDVVEAGSRASERVPRVAPP 702

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
           A   +     + P+       Q +            ++   
Sbjct: 703 AGGHAGPVESSAPVVPRLRAGQRVFHPAFGDGFVVAVREQA 743


>gi|108798375|ref|YP_638572.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119867472|ref|YP_937424.1| UvrD/REP helicase [Mycobacterium sp. KMS]
 gi|108768794|gb|ABG07516.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119693561|gb|ABL90634.1| UvrD/REP helicase [Mycobacterium sp. KMS]
          Length = 1091

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 126/937 (13%), Positives = 250/937 (26%), Gaps = 171/937 (18%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  +         +    +   L +            L        +   V+DF   +
Sbjct: 195  ELERLVHTLPAGPYQRDRGPSQWLLRMLATQTERTELIPLVDALHRRMQSEKVMDFGMQM 254

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
                 L         +  ++      +L+DE QDT   Q   + +L              
Sbjct: 255  AAAARLAAAHP---QVGAELRARYRVVLLDEYQDTGHAQRVALSALFG------GGVDDG 305

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R          + G    ++EL  S+R+    L +
Sbjct: 306  LALTAVGDPIQSIYGWRGASATNLPRFATDFP---LSDGTPARVLELRTSWRNPPSTLHL 362

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + V +           S      R     + GT++L        +              
Sbjct: 363  ANAVSAEARQR------SVAVRSLRPRPGAEPGTIRLALLDNVAAERD------------ 404

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                           +A  +++                      VL+R+  D   +    
Sbjct: 405  --------------WVADEVASRYHAARAEDEA------PPTAAVLLRRNADAAPMAEAL 444

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                    + V       L     + D++A+ R +       + +  +  P +     DI
Sbjct: 445  TA----RGVPVEVVGLAGLLGVAEVADVVAMLRLVADPTAGAAAMRTVTGPRWRLGGRDI 500

Query: 454  FKICTQRHE---------------------------------TETVYEYIQKFANCGISK 480
              +  +  E                                      E         I  
Sbjct: 501  AALWRRAVELDDGGPGPEATAAEIVARAAPDADAACLADAICDPGPAEKYSPEGYRRIVA 560

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                +  +   + IA      +   ++    + R       G    + LD F++      
Sbjct: 561  LGRELTSLRGHLGIALPDLVTEVRRVLGVDVEARAAMPVPAGWSGTEHLDAFVDVVADYA 620

Query: 541  QNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                +++  L++ L+              + +   V+I+TVH AKGLE  VV +     +
Sbjct: 621  GRPGATVGGLLAYLDAAMERENGLAPADLAVSTERVQILTVHAAKGLEWQVVAVPHLSGR 680

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIP----------------QSKSRNNIVSDLIKHLK 640
            +F      +  +    +  P +                       K  ++ ++D  + L+
Sbjct: 681  IFPSTAQARTWLTDPADLPPLLRGDRATTTDHGVPVLDTSDVNDRKILSDRINDHKRRLE 740

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT------------------WY 682
            +   +E  RLLYV +TRA D L++  H   + E K    +                    
Sbjct: 741  QRRVDEERRLLYVALTRAEDTLLLSGHHWGATEAKPRGPSEFLEELKDIIDRAEQAGQPC 800

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK----------- 731
             +V          +K  L +++ +  W A              +                
Sbjct: 801  GVVDQWAPAPADGEKNPLRDNVKEVLWPADPAGGRRTAVDRGAQLVARAMAGAVQTDQDV 860

Query: 732  -----------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
                          +       L  P +  ++    L+        + N       +   
Sbjct: 861  DGWAADVDALLAERERAAQKPPLTLPAEVSVSTLVNLSDDPATVLSRINRRVPTRPDPNA 920

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
            + G   H  +Q  F     +R   +              E + L    T  + +P     
Sbjct: 921  SLGTAFHDWVQRYFG---AERLFDLDDLPGAVDSDTRRAEAEQLTELQTAFMLSPW---- 973

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ-NIFIFEYKTHHHVPQEIEHIPYT 899
                + + + V    +    + ++ GRID +         I ++KT              
Sbjct: 974  ---AARTPIDVEVPFDMVIGETMVRGRIDAVFADDDGGATIVDWKTGAAPDTPAA--AEH 1028

Query: 900  HIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFI 934
               QL++Y          P + +     YV   +   
Sbjct: 1029 AAIQLAVYRLAWAQLSGCPVERVRAAFHYVRPNQTLR 1065


>gi|254448468|ref|ZP_05061928.1| DNA-dependent ATPase I and helicase II [gamma proteobacterium
           HTCC5015]
 gi|198261851|gb|EDY86136.1| DNA-dependent ATPase I and helicase II [gamma proteobacterium
           HTCC5015]
          Length = 725

 Score =  249 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/525 (17%), Positives = 175/525 (33%), Gaps = 83/525 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + + YE   ++  V+DF +L++   +L++  D    +R    +   H+++DE QDT+ I
Sbjct: 172 QIYSAYEAQCQRLGVVDFAELLLRALELIRDNDE---LRDHYQRRFRHLMVDEFQDTNTI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ ++R L            S   +FAVGD+ QSIY + GA  + +   ++         
Sbjct: 229 QYALLRLLAG----------STGRVFAVGDDDQSIYGWRGARIENIQDFRQHF------- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RST  IL   + +    E   G                      QLW
Sbjct: 272 -ADTQLIKLEQNYRSTGHILNAANALIDHNEGRLGK---------------------QLW 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              S F+ + +       AR +   I   +              
Sbjct: 310 -------TDSGEGDPIDLYSAFNEIDE-------ARYVGDRIQQWLENGGARE------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +  +L R    + +             +           +   IKD +A  R    +
Sbjct: 349 ---ECAILYRSNAQSRVFEEEM----MQRGMPYRVYGGLRFFERAEIKDALAYLRLCSHR 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN-----CGISKFQHVI 485
            DD S   ++ +P     E  +  I    +    ++++  +  A               I
Sbjct: 402 NDDASLERVINTPTRGIGERTVAHIRDHAQASRCSMWQAAKVLAENGLNARAAGAVNRFI 461

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFISRFGNEVIDVLDEFLNFTLRN--- 539
           + I E+   +     H+    ++      +   +  S  G    + L E ++        
Sbjct: 462 ELIDEMAAASTDLELHEKIEHVIHHSGLIEHCAKDKSERGETRQENLQELISAGRSFRMD 521

Query: 540 EQNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E+  Y  +  L + L        +    A  + V++MT+H+AKGLE P+VFL      +F
Sbjct: 522 EREEYQDMAPLDAFLSHAVLESGEAQGEAWEDCVQLMTLHSAKGLEFPLVFLAGLEEGLF 581

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            H+   +                    +      ++  +   +  
Sbjct: 582 PHEMSLQEEGRLEEERRLAYVGITRARQQLVMSYAESRRLYGREQ 626


>gi|78064806|ref|YP_367575.1| UvrD/REP helicase [Burkholderia sp. 383]
 gi|77965551|gb|ABB06931.1| UvrD/REP helicase [Burkholderia sp. 383]
          Length = 695

 Score =  249 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 99/577 (17%), Positives = 186/577 (32%), Gaps = 128/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +++L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHLVKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLN---- 534
               +I  L   A           ++ A             R        + EFL     
Sbjct: 466 MFCDFIQRLTERADKDPATAVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 535 -------FTLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E   + +   L          ++             + + VR+ TVH 
Sbjct: 526 KGTKPETAAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKDEDPDAVRLSTVHA 585

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+             +   PI                   
Sbjct: 586 SKGLEYPHVFLVGVEEGIMPHR----------GGSEDDGPI------------------- 616

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 617 DNERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|238918066|ref|YP_002931580.1| ATP-dependent DNA helicase Rep [Edwardsiella ictaluri 93-146]
 gi|238867634|gb|ACR67345.1| ATP-dependent DNA helicase Rep, putative [Edwardsiella ictaluri
           93-146]
          Length = 726

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 97/670 (14%), Positives = 212/670 (31%), Gaps = 123/670 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +     ++  + + K    L++ +    +    + D        +S      L      
Sbjct: 163 DQLALLTDLTERWLEKDKTQLQQLIATISNWKNDLIDPAQAAAQARSARE--RLFADCYG 220

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+   K   VLDF+DLI+    LL++      +R +  Q I ++L+DE QDT+  Q+E+
Sbjct: 221 LYDTQLKSCNVLDFDDLILLPTLLLRRDPE---VRERWQQRIRYLLVDEYQDTNTSQYEL 277

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            S      VGD+ QSIYS+ GA P+ ++  K              
Sbjct: 278 VKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLKEDFPA--------L 319

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +++L  ++RS+  IL   + + +   +       S              G  +  + + 
Sbjct: 320 QVVKLEQNYRSSQRILKAANILIANNPHVFEKRLFSEL------------GYGEPLKVIT 367

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           + ++                          A R+            + ++         D
Sbjct: 368 ANNED-----------------------HEAERVV---------GELIAHHFIHKTAYSD 395

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + +   +        +I    +          IKDL++  R + + +DD 
Sbjct: 396 YAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRAEIKDLLSYLRVLTNPDDDS 451

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+         +++            +  G++  QH  +++
Sbjct: 452 AFLRIVNTPRREIGPSTLQKLGAWANQRGISLFRASFDVGLEQTLSGRGLASLQHFTRWM 511

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRNEQ-- 541
            EL               ++                R     +  +++   +     Q  
Sbjct: 512 DEL-SRLCERDATAAVRDLIHGIDYESWLCETSASPRAAEMRMKNVNQLFGWMTDMLQGS 570

Query: 542 --NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +   +L ++++         +       ++V++MT+H +KGLE P V+LV     +  
Sbjct: 571 DLDEPMTLTQVVNRFTLRDMMERGESEEEADQVQLMTLHASKGLEFPYVYLVGMEEGLLP 630

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 631 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 655

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
             L+           +  +      + +   +D   +  +   S  +          +  
Sbjct: 656 KALVFTLCRERRQYGELMRPEPSRFLLELPQDDLSWESARKVVSPQERMQRGQSHLANLK 715

Query: 720 ENTPLEREET 729
                 +   
Sbjct: 716 AQLARAKSAQ 725


>gi|289649175|ref|ZP_06480518.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            aesculi str. 2250]
          Length = 1230

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 127/1004 (12%), Positives = 276/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +     E          LT +   +        +           ++  +    
Sbjct: 272  EKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAF--------EAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDSLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HGAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEANDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA   A
Sbjct: 485  FLFRDDQGNQVPFSDALAQGRKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLAASCA 544

Query: 351  YTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++             +   R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFAMLDKPLRGLRPADIAILVRDGKEAQAVRQQLSA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWERRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +  +                    LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADGNSQISLQPT----------EALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      SN       +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNASNSMLHRSALGYLLGGGVALAESAEL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN--- 749
                +D     +     P   P +   +  +             +       +       
Sbjct: 877  KVWLRDLAQGCDAIALQPVPEPTDERFSAPRNEAALVKLLVPKRRAAENWWIASYSALRI 936

Query: 750  -----DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  -------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                   +      K ++ +   C +           + L  +  L L          + 
Sbjct: 997  AGNEGFAVTAHAPDKLQDAVARRCNRRGWAGWINTLSDWLQHMLNLPLRLSPDATPVALG 1056

Query: 839  TAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQIS 872
                 + Y  E+     S  +N  + D ++                       G ID   
Sbjct: 1057 ELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQE---------IEHIPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +            +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGIDDTAYTELAMEAAILDNRYDLQYVLYLLALHRQLKARMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F+ P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSASQGAYFVRPPRELIESLDLLFQGKP 1220


>gi|108757579|ref|YP_629768.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622]
 gi|108461459|gb|ABF86644.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622]
          Length = 783

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 99/632 (15%), Positives = 182/632 (28%), Gaps = 122/632 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L + + A Y+E  +    +DF DL++    L +       +     +  +H+L+DE QD
Sbjct: 172 QLVRKVYAAYQERLRAANAVDFGDLLLLLVTLFRT---RPDVLENYRRRFHHVLVDEFQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+ +++ L                L  VGD+ QSIY + GA+   +L   R     
Sbjct: 229 TNPVQYALLKQLA---------PPPSANLVVVGDDDQSIYRWRGADVDNILGFPRQYP-- 277

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +++L  ++RS  +IL    +V             S                
Sbjct: 278 ------GAKVVKLEQNYRSDQNILDAAHEVIRKNTRRMEKKLWS---------------- 315

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                        +   Q  +     D   +          +A  I  +           
Sbjct: 316 ------------ERQRGQTLNLMLNRDERAEGQE-------VARQILALQREGF------ 350

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I+   + V  R    + ++    R      ++           D   ++D  A  R 
Sbjct: 351 ---IKLSSMAVFYRANAQSRVLEEALR----LARVPYTLVSGRSFYDRAEVRDASAYLRL 403

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY------EYIQKFANCGISK 480
           +++   D   + ++  P     +  + ++         ++Y      E I       + +
Sbjct: 404 MVNPRSDADLLRIINIPARGIGDTTVERVTDFANARGVSLYEVLSQPEQIPALNGAAVKR 463

Query: 481 FQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFT 536
            +     +  L   AQ           +L   K  +   +   +E     + L EFL   
Sbjct: 464 LKGFRNLLESLTAFAQTNEEAAGAVDQMLRETKLVETLQAEGSDESQTRAENLREFLGAA 523

Query: 537 LRNEQNS------------------------YSSLQELISELEQYPPTIKRAHSANHNEV 572
              + N                          + +  L + LEQ     +         V
Sbjct: 524 QEFDLNRAAAAVAAAANPPSDVPPEVDAAPLTADVPALQAFLEQISLVGEADAEVGDGRV 583

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE   VFL      VF H    K                           
Sbjct: 584 ALMTLHAAKGLEFDAVFLTGMEENVFPHSRAVKSESTFLNEV------------------ 625

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                        E  RL YVG TRA  +L +      S   +         + D     
Sbjct: 626 -ASADGEPSEEMAEERRLCYVGFTRARKRLFVSLAQCRSLFGELRYNAPSRFLRDVPPAL 684

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
             + + ++  +            T   ++ P 
Sbjct: 685 FGISEQEVPEAPRPMVPSTQRRRTWDEDDGPR 716


>gi|47459324|ref|YP_016186.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K]
 gi|47458654|gb|AAT27975.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K]
          Length = 723

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 101/547 (18%), Positives = 177/547 (32%), Gaps = 113/547 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y E  KK  +LDF DL++ T +L +K      I+ K  +   +IL+DE QD
Sbjct: 171 RIKLKIYLEYNEILKKLALLDFNDLLLKTQELFEKFPE---IKLKWSRRFKYILVDEFQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS IQ+E+I++L ++             L  VGD  Q+IYS+ GA    +L   +  +  
Sbjct: 228 TSPIQYEIIKTLAQN-----------HNLTIVGDPDQTIYSWRGANVNLILDFHKDFEN- 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L L++RST  IL   + +    +        +            Q   
Sbjct: 276 -------AKTINLNLNYRSTEKILKHANSLIHFNKKRLEKDLVA---------YTKQGQE 319

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V     +  + +                          AR +   I  +I          
Sbjct: 320 VIFHHALSPELE--------------------------ARWVVDKIKWLIS--------- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +  +I ++ R    +               I    +      +   IK+ ++  + 
Sbjct: 345 IEKAKLSEISIIYRANFYSKNFEDAL----LRESIHHQVHGGEKFYERSEIKNALSYIKL 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKF------ANCGISK 480
           ++S + DL+F  +L  P  +       K +        ++++ I         ++    K
Sbjct: 401 LVS-DSDLAFQRILNIPQRSIGNIYRNKILDYCDESNLSIFQAINNHLEDLPVSSNIREK 459

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLR 538
              +I  I++   I    +            K      +     N  +D + E L     
Sbjct: 460 LFDLIFKINKYQKIINENNVQVSVDEFFADIKYYDYLANEDTFKNGKVDNVKELLIIISN 519

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +N+    +      E+       +   + N V +M +H  KGLE   VFLV    ++ 
Sbjct: 520 WFRNNPK--KTFQDYFEEISLVPNASQEDDKNTVSLMNIHNCKGLEFSYVFLVGLSEEIL 577

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             K                                 L      S  EE  RL YV +TRA
Sbjct: 578 PSK-------------------------------KALENDFDDSNLEEERRLAYVAITRA 606

Query: 659 SDQLIIC 665
              L + 
Sbjct: 607 KKMLFLT 613


>gi|269137454|ref|YP_003294154.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda EIB202]
 gi|267983114|gb|ACY82943.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda EIB202]
 gi|304557528|gb|ADM40192.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda FL6-60]
          Length = 726

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 96/670 (14%), Positives = 213/670 (31%), Gaps = 123/670 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +     ++  + + K    L++ +    +    + D        +S      L      
Sbjct: 163 DQLALLTDLTERWLEKDKTQLQQLIATISNWKNDLIDPAQAAAQARSARE--RLFADCYG 220

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+   K   VLDF+DLI+    LL++      +R +  Q I ++L+DE QDT+  Q+E+
Sbjct: 221 LYDTQLKSCNVLDFDDLILLPTLLLRRDPE---VRERWQQRIRYLLVDEYQDTNTSQYEL 277

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++  K              
Sbjct: 278 VKLLVG----------TRARFTVVGDDDQSIYSWRGARPQNLVLLKEDFPA--------L 319

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +++L  ++RS+  IL   + + +   +       S              G  +  + + 
Sbjct: 320 QVVKLEQNYRSSQRILKAANILIANNPHVFEKRLFSEL------------GYGEPLKVIT 367

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           + ++                          A R+            + ++         D
Sbjct: 368 ANNED-----------------------HEAERVV---------GELIAHHFIHKTAYSD 395

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + +   +        +I    +          IKDL++  R + + +DD 
Sbjct: 396 YAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRAEIKDLLSYLRVLTNPDDDS 451

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+         +++            +  G++  QH  +++
Sbjct: 452 AFLRIVNTPRREIGPSTLQKLGAWANQRGISLFRASFDVGLEQTLSGRGLASLQHFTRWM 511

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRNEQ-- 541
            EL               ++                R     +  +++   +     Q  
Sbjct: 512 DEL-SQLCERDATAAVRDLIHGIDYESWLFETSASPRAAEMRMKNVNQLFGWMTDMLQGS 570

Query: 542 --NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +   +L ++++         +       ++V++MT+H +KGLE P V+LV     +  
Sbjct: 571 DLDEPMTLTQVVNRFTLRDMMERGESEEEADQVQLMTLHASKGLEFPYVYLVGMEEGLLP 630

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 631 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 655

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L+           +  +      + +   +D   +  +   S  +          +  
Sbjct: 656 KELVFTLCRERRQYGELMRPEPSRFLLELPQDDLSWESARKVVSPQERMQRGQSHLANLK 715

Query: 720 ENTPLEREET 729
                 +   
Sbjct: 716 AQLARAKSAQ 725


>gi|28572402|ref|NP_789182.1| ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27]
 gi|28410533|emb|CAD66919.1| putative ATP-dependent DNA helicase subunit [Tropheryma whipplei
           TW08/27]
          Length = 973

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 117/938 (12%), Positives = 300/938 (31%), Gaps = 139/938 (14%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            ++E     ++ +   ++         E    L+S  +        N++         +L
Sbjct: 130 TAIEDSEAQLIARRLLVEHGLDEDEPSETIDNLASSLIKLDDAIVDNLL------DLGEL 183

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            +   +  +             +F++    L     L    ++ KK    + + + +   
Sbjct: 184 NQFASEFIEFVGAFDAPVAKSDVFRAKR--LIALSKLIPALKDEKKLRGRISYSEQVAFA 241

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            ++ ++      +  +  ++I ++++DE QDTS IQ E ++++  +             +
Sbjct: 242 LEVCRQ----THVLAEFQEKIAYVVLDEYQDTSPIQVEFLKTIFGN----------RCRV 287

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            AVGD +Q+I+ F GA    +    R                EL +S+R+  +IL + + 
Sbjct: 288 LAVGDPRQAIFGFRGASVANIANFARDF--------VSNKQYELSISWRNDKNILDLANH 339

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +                             + ++         +  +   E +T     +
Sbjct: 340 I-----------------------------SPKIRPLHPRPEANDGSTSLEVYTDPEQEV 370

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +           A  +++++   T                VL R R     ++ +    
Sbjct: 371 HEG----------ALWLNSVVEKGTA--------------AVLTRTRSRLISVSRVLDE- 405

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                +S    D   +     + D+++  R I    ++LSF+ ++  P +     D+  +
Sbjct: 406 ---IGVSYTRAD-VNIFYEPGVVDILSCMRIISGVNENLSFLRLITGPRWQVGISDLHAL 461

Query: 457 CTQRH------ETETVYEYIQKF-------ANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                      +  ++ E + +        +  G  + +  +++  ++  ++ F SP + 
Sbjct: 462 RGYIAVGKKNLDRISLLEAVNRINIQKTPMSCEGKKRLEDFLEFFRKIKGLS-FLSPLEL 520

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
             LI  +     +      +   + LD           ++ S +      LE+       
Sbjct: 521 AYLIEESLNLDIEVQMS--HRGRENLDALYELIASFRGDNLSEMLAWFDSLEEEDAFRGP 578

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK------HIKKMHIMPSLNDDPG 617
              +   +V + TVH+AKGLE   V L          +          +       D   
Sbjct: 579 IKQSCPGQVELFTVHSAKGLEWDWVLLPFLDDFPAKSREKSGWLSKTGLLPFCLRLDRES 638

Query: 618 IPIWIPQSKSRNNIVSDLIKHLK----KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           +P +     S +       +  +    +    E  +LLYV +TRA   L I   +     
Sbjct: 639 LPEFYFHKCSDSKEYRAARRQYEDDVLQHQIREERKLLYVAVTRARQGLRISASARQKPG 698

Query: 674 KKSNQRTWYDM--VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
           +   + + +    +  + HN+ + +                + +     N  +E  E   
Sbjct: 699 QFLREISEFLQTDLPQAVHNNPKKRVGYWPLDSLGARRKRVKLAAAAVHNRSIEESEESL 758

Query: 732 QLMDEQKIPKKLFSPIKNDINEP-YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
           +    + +   +   +   +++P   ++ + +  K            +    G+  H  +
Sbjct: 759 KKEPLKALIAGMLKELDISVDKPEKRISATALSKKDPNVFLLPQPPIKNAWLGVAFHAWI 818

Query: 791 QVIFTLPEHKR--KNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYS 847
           +  ++        +N    Y         ++ +   L  +    +++             
Sbjct: 819 ENYYSTYSDMLFHENSADEYGISGPVFEQSQRFSPELDQLRHNFMQSEW-------SYKK 871

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            ++V   +     D+I+   ID +        I ++K+     Q        +  QLS+Y
Sbjct: 872 PIAVELSLEWLIGDVIVPCTIDAVFFDGDRYTILDWKSGLSSNQ--------YRIQLSLY 923

Query: 908 EKILKD---SYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
                +     P+K +   + + ++ +   +    +++
Sbjct: 924 RLAFAEWKGVNPDK-VEAKIYFAADNRTIKVRPYTVDE 960


>gi|289624489|ref|ZP_06457443.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            aesculi str. NCPPB3681]
 gi|330870390|gb|EGH05099.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            aesculi str. 0893_23]
          Length = 1230

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 127/1004 (12%), Positives = 276/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +     E          LT +   +        +           ++  +    
Sbjct: 272  EKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAF--------EAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDSLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HGAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEANDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA   A
Sbjct: 485  FLFRDDQGNQVPFSDALAQGRKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLAASCA 544

Query: 351  YTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++             +   R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFAMLDKPLRGLRPADIAILVRDGKEAQAVRQQLSA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWERRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +  +                    LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADGNSQISLQPT----------EALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      SN       +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNASNSMLHRSALGYLLGGGVALAESAEL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN--- 749
                +D     +     P   P +   +  +             +       +       
Sbjct: 877  KVWLRDLAQGCDAIALQPVPEPTDERFSAPRNEAALVKLLVPKRRAAENWWIASYSALRI 936

Query: 750  -----DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  -------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                   +      K ++ +   C +           + L  +  L L          + 
Sbjct: 997  AGNEGFAVTAHAPDKLQDAVARRCNRRGWAGWINTLSDWLQHMLNLPLRLSPDATPVALG 1056

Query: 839  TAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQIS 872
                 + Y  E+     S  +N  + D ++                       G ID   
Sbjct: 1057 ELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQE---------IEHIPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +            +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGIDDTAYTELAMEAAILDNRYDLQYVLYLLALHRQLKARMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F+ P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSASQGAYFVRPPRELIESLDLLFQGKP 1220


>gi|221202128|ref|ZP_03575163.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2M]
 gi|221209064|ref|ZP_03582059.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2]
 gi|221171059|gb|EEE03511.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2]
 gi|221177922|gb|EEE10334.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2M]
          Length = 781

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 106/613 (17%), Positives = 195/613 (31%), Gaps = 128/613 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 261 AALVYRNYVATLHAYQAVDFDDLIRLPTELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 317

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 318 ACQYQLLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 364

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S   +              
Sbjct: 365 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEHGM-------------- 405

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                             + T+  D           A  + +          + ++  +R
Sbjct: 406 --------------GDAITVTACND-------EEHEAESVVFR---------LSAHKFER 435

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 436 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 491

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   I   +
Sbjct: 492 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQIEPLR 551

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 552 MFCDFIQRLTERADKEPASVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 611

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E + + +   L          ++             + + VR+ TVH 
Sbjct: 612 KGTKPETEAVDGEADGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVHA 671

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+             +   PI                   
Sbjct: 672 SKGLEYPHVFLVGVEEGIMPHR----------GGSEDDGPI------------------- 702

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL+YV +TRA   L +         +++        + +   +D      +
Sbjct: 703 DDERIEEERRLMYVAITRAQRSLHLNWCKKRKRARETVVCEPSRFIPEMGLDDAPPPTPE 762

Query: 700 LTNSINKDEWIAY 712
                 KD   + 
Sbjct: 763 EAPMTPKDRLASL 775


>gi|70734238|ref|YP_257878.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens Pf-5]
 gi|68348537|gb|AAY96143.1| exodeoxyribonuclease V, beta subunit [Pseudomonas fluorescens Pf-5]
          Length = 1230

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 138/1045 (13%), Positives = 292/1045 (27%), Gaps = 145/1045 (13%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSME---TGNPTILKKAQTLQQASQTQCIEE- 64
             +E  E   ++         +   ++ +   E    G  +     + +Q        E+ 
Sbjct: 215  PSELIEACLQERREALVQIKAPWREWAAQLREICLQGVASKSVDGRKMQARFFEPWFEKI 274

Query: 65   -RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              ++   S       T    +  + +++             D    ++   +      + 
Sbjct: 275  SAWAEDESVEQLDIGTGFTRLTPEGMSEAWKGAAPDHPGL-DAMAGLKASLDALPSPDA- 332

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                  A+++ A +EE K++   + F+D+++  +  L+  D    +   I ++    LID
Sbjct: 333  AVLQHAAQWVGARFEEEKRRRAEMGFDDMLLRLDSALQ-SDGGERLATLIREQFPVALID 391

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT  +Q+ +  S+          +     LF +GD KQ+IY+F GA+    LR ++ 
Sbjct: 392  EFQDTDPVQYRIFESIYR-----IEANDPETGLFLIGDPKQAIYAFRGADIYTYLRARQA 446

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         +  L  +FRS+  +++ V+ VF   E                 + + 
Sbjct: 447  ---------TSGRLHTLGTNFRSSQAMVSAVNHVFLQAEQRPQGQGAFLFREADGENPVP 497

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIAYTISNMIGTDTI 362
             +       +     D Q  P    W    +  L         A   A  I  ++     
Sbjct: 498  FLAVAAQGRKEQLLVDGQPVPALNFWQLPSEQPLSGAQYRQHQAAACATAIVGLLNGGQQ 557

Query: 363  FSNGKKR------VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +G  R       +   DI +LVR  K+   +             SV  +D+  +    
Sbjct: 558  GRSGFVREQQALKGLLPADIAILVRDGKEAQAVRGELAA---RGVRSVYLSDKDSVFAAQ 614

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
              +D++   +     + +      L S            +     E     E   +    
Sbjct: 615  EARDVLVWLKACAEPDVERPLRAALAS--------LTLNLPLLELERLNQDELAWEARVM 666

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                ++ + +    L  + +          ++    G +   +         L E L  +
Sbjct: 667  QFRGYRAIWRSQGVLPMLRRLLHDFQLPQALMARSDGERVLTNLL------HLSELLQQS 720

Query: 537  LRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                    + ++ L   L               ++   V+++T+H +KGLE P+VFL   
Sbjct: 721  AAELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI 780

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             S          +H   +           P          +LI    +    E  RLLYV
Sbjct: 781  CSTKPVDGSRLPLHYHDAAGKPQVSLRPTP----------ELIALADEERLAEDLRLLYV 830

Query: 654  GMTRASDQLIICKHSNTSNEKKSN----------------QRTWYDMVYDSFHNDERVKK 697
             +TRA     +           S+                      ++       +    
Sbjct: 831  ALTRAQHACWLGMADLKRGNHSSSVLHLSALGYLLGGGDVLGESSALLRWLLDLQQGCAA 890

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
            I ++     D+              PL       +            S I    +     
Sbjct: 891  IGVSELPVVDDQRYQPPRNEATLLAPLTPSRRAAENWWIASYSALRISDILGAGSTEAPE 950

Query: 758  NPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQVIFT----LPEHKR 801
            NP          L+                  +  N G  +H LL+              
Sbjct: 951  NPQAQKLFDDERLDPEAPRETLASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFAAAPEAI 1010

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENPMMTTAMSCDSYSEVSVSGKI----- 855
            ++ +   C +           + L  + +  L        +     ++  V  +      
Sbjct: 1011 EDAVARRCNRRGWQGWIPTLSDWLQHLLQAPLPLGEGQAPVVLGQLTQYRVEMEFWFASH 1070

Query: 856  --------------------NCPKKDIIIS----GRIDQISISQQNIFIFEYKTHHHVPQ 891
                                    + ++++    G ID     Q   ++ +YK++     
Sbjct: 1071 KVDVLKLDERVRQQTHQGAPRVTAEPVLLNGMFKGFIDLTFEHQGRYYVADYKSNWLGAD 1130

Query: 892  EIEH---------IPYTHIAQLSIYEKILKDSYP--------NKSLVCLLI-YVSE---- 929
            +  +         +   +  Q  +Y   L             ++ +   L  ++      
Sbjct: 1131 DAAYTEQAMEQSILDNRYDLQYVLYLLALHRQLKARLADYDYDRHVGGALYLFLRGTRAA 1190

Query: 930  --PKVFIIPQNKLNKAFAEISTKIP 952
                 F  P  +L +    +    P
Sbjct: 1191 SQGAYFARPPRQLIEQLDRMFQGQP 1215


>gi|320326111|gb|EFW82168.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            glycinea str. B076]
          Length = 1230

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 126/1004 (12%), Positives = 278/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +     E          LT +   +        +           ++  +    
Sbjct: 272  EKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAF--------EAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDSLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HSAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEGNDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA   A
Sbjct: 485  FLFRDDQGNQVPFSDALAQGRKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLAASCA 544

Query: 351  YTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++             +   R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFAMLDKPLRGLRPADIAILVRDGKEAQAVRQQLSA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFVAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWEQRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +  +                    LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADGNSQISLQPT----------EALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      SN       +      D  + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNASNSMLHRSALGYLLGGDVLLAESAEL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKNDI- 751
                +D     +     P   P +   +  +             +       +       
Sbjct: 877  KVWLRDLAQGCDAIAWQPVPEPTDERFSAPRNEAALVKLLVPKRRAAENWWIASYSALRI 936

Query: 752  -------NEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTTGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  -------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                   +        ++ +   C++           + L  +  + L          + 
Sbjct: 997  AGNEGFALTAHTPELLRDAVARRCSRRGWAGWIDTLSDWLQHMLNMPLRLSPDATPVALD 1056

Query: 839  TAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQIS 872
                 + Y  E+     S  +N  + D ++                       G ID   
Sbjct: 1057 ELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +  +         +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGTDDTAYTELAMETAILDNRYDLQYVLYLLALHRQLKARMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F+ P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSVSQGAYFVRPPRELIESLDLLFQGKP 1220


>gi|282853722|ref|ZP_06263059.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes J139]
 gi|282583175|gb|EFB88555.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes J139]
 gi|314983235|gb|EFT27327.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL110PA3]
 gi|315090103|gb|EFT62079.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL110PA4]
          Length = 1078

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 126/868 (14%), Positives = 250/868 (28%), Gaps = 140/868 (16%)

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A  +        K   V  F+DLI +    L+           +      +++DE QDT 
Sbjct: 205  ALSVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLANRFGLVMVDEFQDTD 264

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +QWE+++                  L+ +GD KQSIY+F GA+        +       
Sbjct: 265  PLQWEILQR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ------- 307

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGT 307
                   ++ L +++R+   I+  V+ +FS  +   G+S +  +      R       G 
Sbjct: 308  ---SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHGISTELVTAHHQESRIKTAATDGP 364

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               W Q       Q     +  T+  D    E         +   I  + G   +     
Sbjct: 365  RYHWSQPFQIRCLQAPAGAQLNTAASDQFVTED-------LVNQVIMMLEGGTVVQDGDG 417

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LVR R+    +      +        V +    +    A +DLM L   
Sbjct: 418  SRPLRPNDIAILVRTRRRGAELATALSQVHQ----PAVFSGASPVWSSQAAEDLMTLLEA 473

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D+     +  S L   +  D+    ++      +              +  V   
Sbjct: 474  LEN-TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAA 532

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +H                 ++    G +             +             + ++ 
Sbjct: 533  LHR----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATA 577

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  + +       R   ++   V IMTVH AKGL  PVV L D  +     + I    
Sbjct: 578  AWIREQQQLAGDDEPRRLDSDQQAVIIMTVHEAKGLGFPVVLLPDITNGWAPKQSINGPI 637

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +     D     + I    +  +I    I+  ++  + E  RLLYV +TRA   + +   
Sbjct: 638  VWH---DGQRRVLDISSQGTDRSI---AIESHEEDERGENLRLLYVALTRARSAVRLWWS 691

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                  ++     +  +V       E    +  T+      + +   +T           
Sbjct: 692  PCP---RRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPWFNSGPIATVIAPANQKLLT 748

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEP----------YILNPSTIDTKGKTNLESLLSDN 777
             ++        +P+ L  P+                   ++ S  +      ++    D+
Sbjct: 749  RSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAAVSESMTNNLIDEPVDDESVDD 808

Query: 778  QT---------FNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLS 827
                        + G ++H +L+ I T         +  +         P      L  S
Sbjct: 809  TAPGLCGLPGGTSFGTLVHTVLEYIDTAATDLSSEVLSITRRALRMSPLPDVPPSELATS 868

Query: 828  ITRLLENPM--------MTTAMSCDSYSEVSVSGKIN----------------------- 856
            + ++L + +        +      D  +E++    +                        
Sbjct: 869  LEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMTQHGRSTTMTDLASLLCDPSLVPP 928

Query: 857  -------------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQE------ 892
                          P  D  + G     ID +         + +YKT+            
Sbjct: 929  DDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHM 988

Query: 893  -------IEHIPYTHIAQLSIYEKILKD 913
                          +  Q  +Y   L  
Sbjct: 989  YDAHTMRAIMFSSHYPLQGLLYSAALHR 1016


>gi|205354517|ref|YP_002228318.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205274298|emb|CAR39319.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
          Length = 674

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 103/670 (15%), Positives = 215/670 (32%), Gaps = 121/670 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHIFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 664

Query: 720 ENTPLEREET 729
                +R ++
Sbjct: 665 AMMAAKRAKS 674


>gi|317046371|ref|YP_004114019.1| ATP-dependent DNA helicase Rep [Pantoea sp. At-9b]
 gi|316947988|gb|ADU67463.1| ATP-dependent DNA helicase Rep [Pantoea sp. At-9b]
          Length = 673

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 116/714 (16%), Positives = 239/714 (33%), Gaps = 136/714 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I+ + +L +E         A  ++        +++ +
Sbjct: 59  ASREMKERV-AQTLGRKEARGLMISTFHTLGLEIIKREY--AALGMKSTFSLFDDQDQLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K++  Q + +    L++ +    +    + D        KS     
Sbjct: 116 LL------------KDLTKQWLEEDKTQLQQLISTISNWKNDLVDPQAAVGGAKSQRD-- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +  +    Y++  K   VLDF+DLI+    LLK+      +R +  Q I ++L+DE QD
Sbjct: 162 QIFAHCYQLYDQHLKACNVLDFDDLILLPTLLLKRN---QEVRERWQQRIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L            +      VGD+ QSIYS+ GA P+ ++  K      
Sbjct: 219 TNTSQYELVKLLVG----------ARARFTVVGDDDQSIYSWRGARPQNLVLLKEDFPA- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +++L  ++RS+  IL   + + +   +       S   I +          
Sbjct: 268 -------LEVVKLEQNYRSSQRILKAANILIANNPHVFEKRLFSELGIGNEL-------- 312

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                       +   ++    A R+A           + ++  
Sbjct: 313 ---------------------------KVLMANNEDHEAERVA---------GELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q KD  +L R    + +       L    +I    +          IKDL+A  R 
Sbjct: 337 INKTQYKDYAILYRGNHQSRVFEK----LLMQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + +  DD +F+ ++ +P        + K+        ++++               G+  
Sbjct: 393 LTNPADDSAFLRIVNTPRREIGPATLQKLGEWATLRNKSLFNASFDMGLGQTLTGRGLEH 452

Query: 481 FQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
            Q    ++HE+I +++        D    I       +   S    E  +  ++    + 
Sbjct: 453 LQRFTGWLHEIIQLSEREPINAVRDLIRGIDYESWLFETSPSPKAAEMRMKNVNMLFQWM 512

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E +   +L ++++         +     + ++V++MT+H +KGLE P V+LV 
Sbjct: 513 TEMLEGSELDEPMTLAQVVTRFTLRDMMERGESDEDVDQVQLMTLHASKGLEFPYVYLVG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       ++  EE  RL Y
Sbjct: 573 MEEGILPHQSSID-----------------------------------ENNIEEERRLAY 597

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           VG+TRA  +L            +  +      + +   +D   ++ K   S  +
Sbjct: 598 VGITRAQKELTFTLCRERRQYGELVRPEPSRFLLELPQDDVEWEREKKVVSAEE 651


>gi|197121750|ref|YP_002133701.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196171599|gb|ACG72572.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 1195

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 124/960 (12%), Positives = 263/960 (27%), Gaps = 81/960 (8%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
            E          + + +A +     +    LS+  L +     + +  + + K       +
Sbjct: 228  EASTAGARALVEAVARAREALRPGDLDGALSADGLARLGGLAEALRGRRVLKADGPALRE 287

Query: 100  LKKSQDEFIKIRDRFNT-YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
             +++     +  +                 L +   A Y   K     +DF+D       
Sbjct: 288  AREALAAAWEALEPLAAGVLAAPQQAELARLVEDAEARYAARKASARAVDFDD---LLLR 344

Query: 159  LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
                      +R ++   +  +L+DE QD + +Q EV      +   G +  ++   L A
Sbjct: 345  ARDLLRADPGVRTELRGRLRALLVDEYQDVNPVQQEVF-----ELVAGPDGGAAGPVLVA 399

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            VGD KQSIY F GA+     R  R           +  ++ L  + RS   +L +V++V 
Sbjct: 400  VGDLKQSIYRFRGADVAVFARLIRRLGA------GQGRVLHLSENHRSAPAVLDLVNEVS 453

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
            +        +      +             +         +                   
Sbjct: 454  ARAFRPPPGAPPRDDELAFGEHDRLVPTRPEALRPACEVLEDGAEGNAAERREREAEAIA 513

Query: 339  ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                ++++      +               R  +  D+ +L R+           R    
Sbjct: 514  ARIRALVSGAAGVEVRE-------RDGVTARRPRFGDVAILFRRLTQIAPYERALRA--- 563

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
               I               ++DL  L   +    D +++  +L+SP    S+  +  +  
Sbjct: 564  -AGIPYRLARGGGFYQAPEVRDLGELLAALADPSDAVAWAALLRSPACAVSDGSLVLLAR 622

Query: 459  QRHETETVYE----------------------------------YIQKFANCGISKFQHV 484
                                                          +       ++   +
Sbjct: 623  AGLGRLAWLAPAELAAEVDRAAAGAQAGEDAAAAGPGASPPADVAPRAIPADEWARLLRL 682

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRN--EQ 541
            +     L  +       +     + A       ++    E     L++ L    R   + 
Sbjct: 683  LAAHRTLHALRDRVPVGELLARAVEALDLDAALLAGPDGERRAVNLEKALALAARFGEDG 742

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
             + + L   +      PP    A     + V +++VH AKGLE PV F+ D G++  +  
Sbjct: 743  GTPAELAAHLRAQAARPPREPEAELEAADAVSLLSVHQAKGLEWPVAFVPDLGARARADL 802

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                +     L     +     ++      ++      ++S   E  RLLYV +TRA D 
Sbjct: 803  RRALLDRDGRLCVA--LFDPAREAFVETAALARARDDDRRSAAAESRRLLYVALTRARDL 860

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            L++    + +   +           D        + +    +           ST  P  
Sbjct: 861  LVLSGEGSGAETWRGMVEAGLAERPDLARRIPVAEDVAAAMADAPPAPARAAASTAEPLA 920

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
             P                    ++          +L     + +G   +       +   
Sbjct: 921  PPPLAPPAPPAATRAAVTELAEYARCPRRHLLGRVLGI--PEPRGAPGVPPGDDPGRATA 978

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA-KEYKNLLLSITRLLENPMMTTA 840
            RG + H +L           +    +         PA    + +LL + R  E+P     
Sbjct: 979  RGTLAHAMLAETDLGAPPLERRAQLAAAAARRGYDPASPGVRRILLEVARFAESPGGREL 1038

Query: 841  MSC----DSYSEVSVSGKINCPKK--DIIISGRIDQISIS--QQNIFIFEYKTHHHVPQE 892
                       EV    ++        + + G +D +        + + +YK        
Sbjct: 1039 ALAAREGRLLREVPFLLRLGPGDGAPAVYLVGALDALVQERRGGGLTVVDYKYATPRAG- 1097

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
                   +  QL  Y      ++P   +   L ++       +      +         P
Sbjct: 1098 ---AAERYRLQLLAYVLAAARAHPGARVRARLQFLRGDH-RAVDVTPSARELERFEQDAP 1153


>gi|325265844|ref|ZP_08132530.1| ATP-dependent DNA helicase Rep [Kingella denitrificans ATCC 33394]
 gi|324982482|gb|EGC18108.1| ATP-dependent DNA helicase Rep [Kingella denitrificans ATCC 33394]
          Length = 684

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 92/564 (16%), Positives = 181/564 (32%), Gaps = 88/564 (15%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           ++   +           S    +        I+     +     + ++   ++      D
Sbjct: 108 MRILREDAPSVGYKRNFSVLDASDSQKILTEILGSSGREPVFKAQHQISLWKNRLQTPED 167

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                     +         + A Y+E       +DF+DLI     LL++    + IR K
Sbjct: 168 AVQAA-----SDDWERQTAQVYAAYQETLLHYQAVDFDDLIRLPVLLLQEH---SDIRLK 219

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             Q + ++L+DE QDT+  Q+ ++R L                  AVGD+ QSIY++ GA
Sbjct: 220 WQQRLRYLLVDECQDTNACQYALLRCLAGL----------EGQFTAVGDDDQSIYAWRGA 269

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             + + R +    +          +I+L  ++RSTA IL + +++ +             
Sbjct: 270 NMENLRRLQEDYPQ--------LKMIKLEQNYRSTARILRIANQMITNNPK--------- 312

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            L+ + +     + NP +                   A  +A  
Sbjct: 313 -----------------LFPKTLWSQLGEGNPVRIVVC---------DDEQREAEYVAQQ 346

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I             +    +  D  VL R      +     R       I+   +     
Sbjct: 347 IYQ---------QKRIHGAKYADFAVLYRSNHQARIFEQALRA----AHIAYTISGGQSF 393

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI- 470
            D   IKD++A  R + +  DD +F+    +P     +  + K+    +    +++E   
Sbjct: 394 YDKAEIKDVLAYMRVLANPNDDPAFLRAATTPKRGIGDTTLGKLNDYAKQHECSLFEAAG 453

Query: 471 -----QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS------ 519
                   +       Q  +  +H+    AQ          +L         ++      
Sbjct: 454 SLHALTALSGKSRESLQQFMALLHDYGRRAQEDDAGATIQDLLKDIDYENHLLAMSDNNS 513

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           +        + E  ++  R  +    SL +L   +        R      + V++ T+H 
Sbjct: 514 KMAENRWRNVQELCDWLARKGEEGERSLVDLTQTIALMTLLEGRNGEE-IDAVKLSTLHA 572

Query: 580 AKGLESPVVFLVDTGSQVFSHKHI 603
           +KGLE P V+LV     +  H   
Sbjct: 573 SKGLEYPFVYLVGCEEGILPHADS 596


>gi|170731518|ref|YP_001763465.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
 gi|169814760|gb|ACA89343.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3]
          Length = 695

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 102/577 (17%), Positives = 186/577 (32%), Gaps = 128/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKQLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S                  
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWS------------------ 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 316 -----------------EHGMGDSITVTACNDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 466 MFCDFIQRLTERADKEPATVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E   + +   L          ++             + + VR+ TVH 
Sbjct: 526 KGTKPETDAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKDEDPDAVRLSTVHA 585

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+             +   PI                   
Sbjct: 586 SKGLEYPHVFLVGVEEGIMPHR----------GGSEDDGPI------------------- 616

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 617 DNERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|124265321|ref|YP_001019325.1| putative ATP-dependent DNA helicase rep protein [Methylibium
           petroleiphilum PM1]
 gi|124258096|gb|ABM93090.1| putative ATP-dependent DNA helicase rep protein [Methylibium
           petroleiphilum PM1]
          Length = 693

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 117/718 (16%), Positives = 217/718 (30%), Gaps = 113/718 (15%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQCIEERFSLLSSFF 73
           +   L P     ++  NK  +   E     +  +     L     +  +       ++  
Sbjct: 33  LEAGLAPSQIAAITFTNKAAAEMRERAKALVGARPAKGLLISTFHSLGVRLLREDGAALG 92

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEK--LKKSQDEFIKIRDRFNTYKMFKSTL--ASLTL 129
           L  +F+   +     I + +    +    ++ Q      +++  T    ++         
Sbjct: 93  LKPQFSILDSDDVLGILRDAGGTTDAKTARRWQWAISLWKNQGLTPAQAEAEAKNPDEVQ 152

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+E       +DF+DLI     LL++ DV   +R K    + H+L+DE QDT+
Sbjct: 153 AARVMTRYQERLAAYQAVDFDDLIGLPVALLQRHDV---VRAKWQAALRHVLVDEYQDTN 209

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L  D   G+     P    AVGD+ QSIY + GA    + R  +       
Sbjct: 210 AQQYELLKLLVGD---GQGGRDRPAMFTAVGDDDQSIYGWRGATIDNLKRLPQDYP---- 262

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L  ++RST +IL   + V +           S           G+   V 
Sbjct: 263 ----DLQVIPLEQNYRSTGNILRAANHVIAANPKIFDKKLWSE-------FGDGEPVRV- 310

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI-GTDTIFSNGKK 368
                                       +  S    A R    I  +             
Sbjct: 311 ---------------------------VESDSEEHEAERAVARIQALRGQGGAAAGAVGG 343

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           + I+ KD  +L R      +     R      +I    +      +   IKDL A  R +
Sbjct: 344 QGIEWKDFAILYRANHQARVFEQALR----KAQIPYKVSGGQSYFERAEIKDLCAWLRLL 399

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET----------ETVYEYIQKFANCGI 478
           ++Q+DD +F+  + +P        +  +                 E++   +   A   +
Sbjct: 400 VNQDDDPAFLRAVTTPKRGIGHQTLAGLGEFAGRWKVSLYEALFAESLGTVLSAKAVGSL 459

Query: 479 SKFQHVIKYIH-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEF 532
            +F   +  +                    L      Q       +E         + +F
Sbjct: 460 HEFGRCVNDLEYRARQTVGAEDARALLMGWLKDIGYEQHLHDGEDSEKLAAARWSNVLDF 519

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKR---------AHSANHNEVRIMTVHTAKGL 583
           + +  R      +          +    + +             + N + + T+H AKGL
Sbjct: 520 VEWIARRCGGETADDGSGQESERRSVLEVAQTIAVIISLAERGDDQNVLTLSTLHAAKGL 579

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P V L      +   K                                 L        
Sbjct: 580 EWPHVVLAGVNEGLLPFKTDD----------------------------ESLTAAALVQR 611

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            EE  RL+YVG+TRA   L +         +++        + +    + RVK+    
Sbjct: 612 LEEERRLMYVGITRARSTLAVSWLKRRKRGRETVAGAPSRFIAEMKLEEGRVKEDPRE 669


>gi|83649062|ref|YP_437497.1| ATP-dependent DNA helicase Rep [Hahella chejuensis KCTC 2396]
 gi|83637105|gb|ABC33072.1| ATP-dependent DNA helicase Rep [Hahella chejuensis KCTC 2396]
          Length = 672

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 103/604 (17%), Positives = 207/604 (34%), Gaps = 124/604 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN--TYKMFKSTLASLTLAKYLNAHYEE 139
           K II   + K+  + +E + + Q  F   ++        + ++  A    A  L   Y+ 
Sbjct: 115 KAIIKDLLFKEFDEAEEDVDQLQAHFSNWKNDMLTPAQAIKQAITAEDLTAARLYERYDH 174

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             +    +DF+DLI+    L +       I       I ++L+DE QDT+L Q+E+++ L
Sbjct: 175 YLRAYNAVDFDDLILMPVMLFRNHPE---ILAAWRLRIRYLLVDEYQDTNLSQYELVQQL 231

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                         +    VGD+ QSIY++ GA P+ ++R ++              +++
Sbjct: 232 VA----------GRQAFTVVGDDDQSIYAWRGARPENLVRLQKDFPT--------LKLVK 273

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RSTA IL   + + +   +    +                     LW Q+    +
Sbjct: 274 LEQNYRSTARILKAANTLIANNPHVYEKA---------------------LWSQLGMGDE 312

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
            +    +              +    A RIA  I              K+  Q KD  VL
Sbjct: 313 IRIIRVR--------------NEEAEAERIASEI---------IDTRLKKRAQYKDFSVL 349

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    + L+    +     Y+I    +          IKD M+  R + + +DD +F+ 
Sbjct: 350 YRGNHQSRLLELKLQA----YQIPYRISGGTSFFSRNEIKDAMSYLRLLANPDDDAAFLR 405

Query: 440 MLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIK-YIHEL 491
           ++  P        + K+         +++  I +           +   +   +  +H  
Sbjct: 406 VVNVPRREIGPVTLEKLSSYAESRKISLFSAISEFGLESVLTGKTLDHLREFSEIILHTG 465

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTL-----RNEQ 541
               +          +       +  +      +     +  +   L+            
Sbjct: 466 QKCEEEHDAVPVLKQLFTRIDYEEWLLQNSTSPQQAERRMANVWILLDQVARMLEYDAAA 525

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +   +L++ I +L       ++    + ++V ++T+H +KGLE P VF++     +  H 
Sbjct: 526 DEQMTLKDAIGKLLLRDIMDQQKEEEDEDKVHLLTLHASKGLEFPHVFIMGLEEDILPH- 584

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                ++ +  EE  RL+YVG+TRA   
Sbjct: 585 ----------------------------------RNSIETNQIEEERRLMYVGITRAQRS 610

Query: 662 LIIC 665
           L + 
Sbjct: 611 LCLT 614


>gi|261493834|ref|ZP_05990348.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
            BOVINE]
 gi|261310537|gb|EEY11726.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str.
            BOVINE]
          Length = 1174

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 129/875 (14%), Positives = 251/875 (28%), Gaps = 128/875 (14%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
            L K+Q      ++RF            L   K   A Y   K+ +    F+DL+   N  
Sbjct: 314  LAKNQAFLTAYKERFENSLSAMLQYQFLIALKAKLAEY---KQSHPQRSFDDLLTMLNQA 370

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            LK       +  KI       +IDE QDT L Q+E+   +           ++      +
Sbjct: 371  LKNLHTGEALAQKIRAMYPFAMIDEFQDTDLTQYEIFSQIF-------MAENAENGFIMI 423

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD KQSIY F GA+    LR  +          Q      L  ++RS  +++  V+ +FS
Sbjct: 424  GDPKQSIYKFRGADIFTYLRAAK----------QADEQFTLGKNWRSLPEVVQAVNNLFS 473

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ- 338
               +      +                 +            Q   +Q  +  Y     + 
Sbjct: 474  FANDNSPFLYED----------------IGFHPVEADSQKGQLVSEQGHFVGYITENSKL 517

Query: 339  ESSASILARRIAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            +  A + A +I   +  M          G+ +   AKDI +LVRK      I    + L 
Sbjct: 518  DDLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQAKRIK---KALA 574

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                 SV   +   +       +L  L +  L+     + +  L S L+  +  +I    
Sbjct: 575  KRNIKSVYLAELASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWGLTAAEI---- 630

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
             +  E E +++          + ++        ++ +             L   +   + 
Sbjct: 631  HRYKENEQLWDLKVNQFVEYSNIWKE-----QGVLPMLHKIYLEQGIIERLKGLENADRL 685

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIM 575
            I+         L E L  T +  ++    L+    ++         +    +    ++I+
Sbjct: 686  ITDLL-----HLTEILQETSQALESEAELLRWYEKQVNSPDFNDEQQLRLESEEELIKIV 740

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGL+ P+V+L     +              S                      + 
Sbjct: 741  TIHGSKGLQYPIVWLPFVSQKSEGDTQTALSLYRNSQGALDWCL-----------GSEEA 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY--------D 687
               L+     E  RLLYV +TRA  QL +      S     +       +          
Sbjct: 790  SFSLQYEAYAEDLRLLYVALTRAESQLNLVLPKEISGWSPLHYLLADGEIPTGKVPVSDY 849

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                      +++   +    W   + S  +   T       + Q+     +  +     
Sbjct: 850  FSQKRIAANLVEVAGELPFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFS 909

Query: 748  KNDINEPYILNPS--------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            +        L                 +T   S          G ++H   +      + 
Sbjct: 910  EGKSERVMDLAQDRDVHIETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQI 969

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSG 853
             R+                +  +   L   R+L  P+      +         +E     
Sbjct: 970  DREAVAKVC---EQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYL 1026

Query: 854  KINCPKK--------------------------DIIISGRIDQISISQQNIFIFEYKT-- 885
            ++   K                           +  + G +D I   ++  ++ +YK+  
Sbjct: 1027 RLKNDKALHQLNALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNF 1086

Query: 886  -HHHVPQEIEHI------PYTHIAQLSIYEKILKD 913
              +      +           +  Q  +Y   L  
Sbjct: 1087 LGYLPQNYAKEHIQREMGRQRYDLQYLLYTLALHR 1121


>gi|260596007|ref|YP_003208578.1| ATP-dependent DNA helicase Rep [Cronobacter turicensis z3032]
 gi|260215184|emb|CBA27013.1| ATP-dependent DNA helicase rep [Cronobacter turicensis z3032]
          Length = 673

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 91/588 (15%), Positives = 195/588 (33%), Gaps = 123/588 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +  +  + Y+   K   VLDF+DLI+    LL++ +    +R +    I ++L+DE QD
Sbjct: 162 RIFAHCYSLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNRIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L            S      VGD+ QSIYS+ GA P+ ++   +     
Sbjct: 219 TNTSQYELVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +       S                
Sbjct: 268 -------LQVIKLEQNYRSSGRILKAANILIANNPHVFEKKLFS---------------- 304

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                              E        +   +     A R+         T  + ++  
Sbjct: 305 -------------------ELGYGPELKVLTANHEDHEAERV---------TGELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q KD  +L R    + +   +        +I    +          IKDL+A  R 
Sbjct: 337 INKTQYKDYAILYRGNHQSRVFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + +  DD +F+ ++ +P        + K+        ++++            +  G   
Sbjct: 393 LTNPGDDSAFLRIVNTPKREIGPATLQKLGEWANQRNKSLFTASFDMGLAQTLSGRGYES 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNF 535
                 ++ ++  +++          ++                +     +  +++  ++
Sbjct: 453 LTRFTSWLQDVAVLSEREPVAA-VRDLIRGIDYEAWLFETSPSPKAAEMRMKNVNQLFSW 511

Query: 536 TLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                   + +   +L ++++         +       ++V++MT+H +KGLE P VFLV
Sbjct: 512 MTEMLEGTDLDEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLV 571

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  H+                                       +   +E  RL 
Sbjct: 572 GMEEGLLPHQSSID-----------------------------------EDNIDEERRLA 596

Query: 652 YVGMTRASDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           YVG+TRA  +L   +CK      E    + + + +           ++
Sbjct: 597 YVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLHWETER 644


>gi|88811284|ref|ZP_01126540.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231]
 gi|88791823|gb|EAR22934.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231]
          Length = 736

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 122/747 (16%), Positives = 238/747 (31%), Gaps = 133/747 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  W L   + S  +             +  +   L   +        
Sbjct: 41  GAGSGKTRVLTHRAAWLLQAEEASAYSILAVTFTNKAAAEMRGRIAGLVGIAAGGMWIGT 100

Query: 66  FSLLS--------------SFFLTQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKI 110
           F  L+                F       Q+ +I + +   +  + +   ++ Q      
Sbjct: 101 FHGLAHRLLRLHWREAGLPQHFQILDAEDQRRLIRRTLRNLEIDESRWPPRQIQGFINAR 160

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC-VLDFEDLIINTNDLLKKRDVSAWI 169
           +D     +  +   A     + L   YEEA +    ++DF +L++   +LL+ +     +
Sbjct: 161 KDEGRRPEALEPHDAYSEQMRQLYRAYEEACRAGGGLVDFAELLLRCYELLRHQPA---L 217

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +   HIL+DE QDT+ IQ+E +R L            S   +F VGD+ QSIY +
Sbjct: 218 LEHYRRRFRHILVDEFQDTNRIQYEWLRLLAG----------SESDVFIVGDDDQSIYGW 267

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + + R +R              ++ L  ++RST  IL   + + +      G   
Sbjct: 268 RGAQVENMQRLQRD--------EPSTRVLRLEQNYRSTRTILAAANALIARNSRRLGKHL 319

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                                              +  +  + F       S    AR +
Sbjct: 320 W----------------------------TEGAAGEPIAVYAAF-------SEQDEARFV 344

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I ++I ++              D  +L R    +              +I       
Sbjct: 345 VERIRSLIESE---------GYARSDCAILYRSNAQSRAFEETL----FGREIPYRVYGG 391

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   IKD +A  R ++++ DD SF  ++ +P        +  +    R    ++++
Sbjct: 392 LRFFERAEIKDALAYLRLLVNRNDDASFERVINTPPRGIGVKTLDALRSQARQRQTSLWQ 451

Query: 469 YIQKFANCGISKFQ------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +    G    +        I+ I  L       +      ++L      + +     
Sbjct: 452 AAGELLRAGALSGRAARATTAFIELIDRLSGPLAEPALAARIEVVLAQCGLHEHYAKDRS 511

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSS---LQELISELEQYPPTI-KRAHSANHNEVRIM 575
             G + ++ LDE ++     EQ    +      L + L        +       + V++M
Sbjct: 512 ERGLDRLENLDELISAARTFEQAREPTDDEADSLTAFLAHAALEAGEVQAGEQDDGVQLM 571

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVFLV     +F H+                                  
Sbjct: 572 TLHSAKGLEFPVVFLVGLEEGLFPHRMALDEPG--------------------------- 604

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    EE  RL YVG+TRA  +L++          + +  T    + +      + 
Sbjct: 605 -------RLEEERRLCYVGITRARQRLLLSFAERRRLHGQDHYGTASRFLLELPTELVQE 657

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENT 722
            + + + +  + +  A E         
Sbjct: 658 VRARFSVTRPQTKVHAVEPMVTADTAA 684


>gi|213021539|ref|ZP_03335986.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 567

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/467 (17%), Positives = 159/467 (34%), Gaps = 82/467 (17%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+V + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSVANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLES 585
             +    L  L + L        +       + V++MT+H+AKGLE 
Sbjct: 521 YNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEF 567


>gi|282890920|ref|ZP_06299436.1| hypothetical protein pah_c030o020 [Parachlamydia acanthamoebae str.
            Hall's coccus]
 gi|281499204|gb|EFB41507.1| hypothetical protein pah_c030o020 [Parachlamydia acanthamoebae str.
            Hall's coccus]
          Length = 1167

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 150/958 (15%), Positives = 311/958 (32%), Gaps = 126/958 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL---QQASQTQCIEERFSLLSSF 72
            + KD     +  ++D +  + L     +     KA+TL   Q  +     EE        
Sbjct: 229  LLKDRGFSSHSILTDFHTLIPLYKGLTDRQKRIKAETLSKVQLFASLFDQEEWSLQDYES 288

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-AK 131
             +  +    K +    + +K+      +    +    ++          ST A L    +
Sbjct: 289  VIEDQLFLVKALDPSALTQKALSAPPPILILPNMLSLLKRHLEPLVNPLSTFAKLAYDCQ 348

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                HY++ ++K     F+DL+ N    L+    +  IR     +    LIDE QDT  I
Sbjct: 349  KFLKHYQQQEEKFR---FDDLLHNMLQALQDPTFTENIR----NQYRAALIDEFQDTDPI 401

Query: 192  QWEVIRSLT-EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            QW++  SL   + + G         L+ VGD KQSIY+F  A+    L   +   +    
Sbjct: 402  QWKIFESLFLHEAYSGY--------LYLVGDPKQSIYAFRQADIYTYLSAAQAIGEDY-- 451

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS-TTTIRHRSSRIGQVGTVQ 309
                   + L  ++RS   ++  ++ +F+       +       T+ ++  +        
Sbjct: 452  ------RVSLTTNYRSHPSLVQGLNVLFAQENAPDFIHLPKWQKTLNYQHVQAAD----- 500

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
              +        +        +             +    IA  I  +   +T        
Sbjct: 501  --KTFGKTLTDEMGSIHFILSDQEKPSLDSLEEKVYFPFIAQEIQKLCHQNT-------- 550

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
              + +D  VLV  R     ++   + L     I  +      L D  A++    +   IL
Sbjct: 551  -FEYQDFAVLVADRYQAQRMSDYFKTL----NIPSLTQRNANLADSPAVQCWQEILHGIL 605

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF--QHVIKY 487
                  +    L   +F ++ +DI ++     E    YE           K   +  I +
Sbjct: 606  HARQSSALKIALGGKIFGWNHEDILRL-----EDPFFYEKTLAEIYFLRKKLLSEGFIAF 660

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
               L+H   F   H     IL  + G   F+          + E L             L
Sbjct: 661  YDALMHHQLFQDSHTLIEKILHQESG-ADFLDELCQ-----IAELLIQKQNETHCPPEGL 714

Query: 548  QELISEL----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               + E           + +    +   V+I+++H++KGLE  +VF++         K+ 
Sbjct: 715  IAFLDEFPILKLNDDERLYKQVDTHRKAVQILSLHSSKGLEFEIVFVLGLTK-----KNQ 769

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                ++P   +     + +         +        +    E  R LYV  TRA  +L 
Sbjct: 770  APSPLIPQSQEGSQSILQMVYDLQDPAYIDYC-----QELDAEKMRQLYVAFTRAKYRLY 824

Query: 664  ICKHSNTSNE--------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN---- 705
            +   S    +              K       Y  +Y+  H +     I   ++++    
Sbjct: 825  VAALSPYEKQTAYGCASPIELFLAKLGQPSCTYAQLYERIHANSTESLISFIDALDNSIS 884

Query: 706  -----KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                 + +     +  +   +  L    TI    +   I    FS I   +++   +   
Sbjct: 885  ITYTIESQVTPPCYEMNTTPSPILLPPPTIHISGEMLAIS--SFSQISKQMDQITPVWTE 942

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--FITSYCTKNAKLWPA 818
            +       + ++L +       GL++H++L+       +  +N   + S+ T   +    
Sbjct: 943  SPPHHFDASTKNLHTLPAGNITGLLLHEILEKFPFEKANDMQNPSEMRSWITPYVQNTEF 1002

Query: 819  KEYKNLLLSIT-RLLENPM--------MTTAMSCDSYSEVSVSGK-----INCPKKDIII 864
            +++  +L  +    L+ P+        +        + EV          ++    +  +
Sbjct: 1003 QDWDQVLAEMLFNTLKTPLPFKDATFALQDVQETKIFKEVEFLYPCEKGLLDLHIPEGFL 1062

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
             G ID +       ++ ++K++   P          +     + +  Q +IY + LK 
Sbjct: 1063 KGVIDLMFEHAGKFYMIDWKSNWLGPNLQAYSTTSLQQSMHQHHYHLQSAIYVESLKR 1120


>gi|204930185|ref|ZP_03221162.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204320589|gb|EDZ05791.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 674

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 103/670 (15%), Positives = 215/670 (32%), Gaps = 121/670 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGISFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 664

Query: 720 ENTPLEREET 729
                +R ++
Sbjct: 665 AMMAAKRAKS 674


>gi|28493486|ref|NP_787647.1| DNA helicase II [Tropheryma whipplei str. Twist]
 gi|28476528|gb|AAO44616.1| putative DNA helicase II [Tropheryma whipplei str. Twist]
          Length = 973

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 117/938 (12%), Positives = 300/938 (31%), Gaps = 139/938 (14%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            ++E     ++ +   ++         E    L+S  +        N++         +L
Sbjct: 130 TAIEDSEAQLIARRLLVEHGLDEDEPSETIDNLASSLIKLDDAIVDNLL------DLGEL 183

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            +   +  +             +F++    L     L    ++ KK    + + + +   
Sbjct: 184 NQFASEFIEFVGAFDAPVAKSDVFRAKR--LIALSKLIPALKDEKKLRGRISYSEQVAFA 241

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            ++ ++      +  +  ++I ++++DE QDTS IQ E ++++  +             +
Sbjct: 242 LEVCRQ----THVLAEFQEKIAYVVLDEYQDTSPIQVEFLKTIFGN----------RCRV 287

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            AVGD +Q+I+ F GA    +    R                EL +S+R+  +IL + + 
Sbjct: 288 LAVGDPRQAIFGFRGASVANIANFARDF--------VSNKQYELSISWRNDKNILDLANH 339

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +                             + ++         +  +   E +T     +
Sbjct: 340 I-----------------------------SPKIRPLHPRPEANDGSTSLEVYTDPEQEV 370

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +           A  +++++   T                VL R R     ++ +    
Sbjct: 371 HEG----------ALWLNSVVEKGTA--------------AVLTRTRSRLISVSRVLDE- 405

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                +S    D   +     + D+++  R I    ++LSF+ ++  P +     D+  +
Sbjct: 406 ---IGVSYTRAD-VNIFYEPEVVDILSCMRIISGVNENLSFLRLITGPRWQVGISDLHAL 461

Query: 457 CTQRH------ETETVYEYIQKF-------ANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                      +  ++ E + +        +  G  + +  +++  ++  ++ F SP + 
Sbjct: 462 RGYIAVGKKNLDRISLLEAVNRINIQKTPMSCEGKKRLEDFLEFFRKIKGLS-FLSPLEL 520

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
             LI  +     +      +   + LD           ++ S +      LE+       
Sbjct: 521 AYLIEESLNLDIEVQMS--HRGRENLDALYELIASFRGDNLSEMLAWFDSLEEEDAFRGP 578

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK------HIKKMHIMPSLNDDPG 617
              +   +V + TVH+AKGLE   V L          +          +       D   
Sbjct: 579 TKQSCPGQVELFTVHSAKGLEWDWVLLPFLDDFPAKSREKSGWLSKTGLLPFCLRLDRES 638

Query: 618 IPIWIPQSKSRNNIVSDLIKHLK----KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           +P +     S +       +  +    +    E  +LLYV +TRA   L I   +     
Sbjct: 639 LPEFYFHKCSDSKEYRAARRQYEDDVLQHQIREERKLLYVAVTRARQGLRISASARQKPG 698

Query: 674 KKSNQRTWYDM--VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
           +   + + +    +  + HN+ + +                + +     N  +E  E   
Sbjct: 699 QFLREISEFLQTDLPQAVHNNPKKRVGYWPLDSLGARRKRVKLAAAAVHNRSIEESEESL 758

Query: 732 QLMDEQKIPKKLFSPIKNDINEP-YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
           +    + +   +   +   +++P   ++ + +  K            +    G+  H  +
Sbjct: 759 KKEPLKALIAGMLKELDISVDKPEKRISATALSKKDPNVFLLPQPPIKNAWLGVAFHAWI 818

Query: 791 QVIFTLPEHKR--KNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYS 847
           +  ++        +N    Y         ++ +   L  +    +++             
Sbjct: 819 ENYYSTYSDMLFHENSADEYGISGPVFEQSQRFSPELDQLRHNFMQSEW-------SYKK 871

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            ++V   +     D+I+   ID +        I ++K+     Q        +  QLS+Y
Sbjct: 872 PIAVELSLEWLIGDVIVPCTIDAVFFDGDRYTILDWKSGLSSNQ--------YRIQLSLY 923

Query: 908 EKILKD---SYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
                +     P+K +   + + ++ +   +    +++
Sbjct: 924 RLAFAEWKGVNPDK-VEAKIYFAADNRTIKVRPYTVDE 960


>gi|320107768|ref|YP_004183358.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
 gi|319926289|gb|ADV83364.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
          Length = 1189

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 133/953 (13%), Positives = 288/953 (30%), Gaps = 109/953 (11%)

Query: 50   AQTLQQASQTQCIEERFSLLSSFFLTQKFT-PQKN--------IITQEINKKSPDLKEKL 100
             + L            +  L +  +T+     +K+        II + +  +  +L + +
Sbjct: 277  REHLSPPGTECGHLPYWVALIALLMTKDKDGWRKSYQSNHVNLIIPKPVQVELKELVDSI 336

Query: 101  KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK-------KKNCVLDFEDLI 153
            +    E     +   +            +AK L      A         ++   DF ++ 
Sbjct: 337  RS--PELSAAIENVRSAPSPPYPPEQWIVAKALFRLLRNALGELRLVFAEDGECDFTEVS 394

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            ++  + L+  +    +   +   + H+L+DE+QDTS  Q++++++LT           S 
Sbjct: 395  LSAREALRHGNGKGDLAAMMGMRMQHLLMDEMQDTSASQYDLLQALTA------GWDGSS 448

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
            +TLF VGD KQSIY F  A+ +  L+                S + L  +FRS   ++  
Sbjct: 449  QTLFLVGDPKQSIYLFREAKVELFLKAL----TTERLGDVPLSRLVLTSNFRSQERLVKG 504

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             ++VF          E     + H ++        +L                     Y 
Sbjct: 505  FNEVF-----RLLFPEREGEIVYHDATAEVPAQEHELRWHATPLP-------------YM 546

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
            D     +      R  A  I++++           +  +A    VLVR +    LI  + 
Sbjct: 547  DRAQAGAYNKQREREQAEEIASLLHDWRSRPVSVAKP-KASSAAVLVRTKAHASLIMEVL 605

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                    I     +   L D   + D+++L R +L   D  +++ +  +P       D+
Sbjct: 606  AE----AGIPYRAVEMERLADRQEVLDVLSLTRALLHPADRTAWLAIFHAPWCGLGLADL 661

Query: 454  FKI-------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
              +         QR   + + E ++  +     + +     +   +          +   
Sbjct: 662  HILAAGDDPAQAQRPLEQMLPERLKLLSEASRIRAEKTWTILSAALGQRGRMPLVRWVEH 721

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH 565
                  G        G+E    +  F +   +   Q    +L  L   L++    +   H
Sbjct: 722  TWHLLGGDL----CAGSEGSANVTRFFHLLEKMTAQRGEPNLSALQDSLQK----LFAEH 773

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP-- 623
            +A  + V I+T+H AKGLE  +V +         +             DD G    +   
Sbjct: 774  AAAPDAVEILTIHKAKGLEWDLVIVPSLEKTSRRNDSTLLDWAEFQYEDDLGEISHLLLA 833

Query: 624  ----QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                 S    ++   +  H     + E  RLLYV  TRA   L +      + +  S   
Sbjct: 834  PIQSSSGKPGSLNDFIRGHHNARGEAELKRLLYVATTRARSALHLFAS-PATKKDNSVGA 892

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                +++ ++   E +             W +            L     +       + 
Sbjct: 893  RRGTLLHAAWPIAEALFAEPAPVPTKLLFWPSSAAEPQEGSGLALAAGAEVAAKRPILRR 952

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
             +  F P +  +        + +D       +      +    G  +H  L+ +      
Sbjct: 953  LRADFDPRERLL-ATKPEGTANVDLPALPAFQRSGGSLEVRAVGETVHAFLEEVAARVAE 1011

Query: 800  K--RKNFITSYCTKNAKLWP------------------AKEYKN--LLLSITRLLENPMM 837
                     +   +                          E      L+++   L +   
Sbjct: 1012 DMSEGTAANAAFEQEMGRLSSTKGRMTNYARSQGLSPRDAERAAGLALVALESALSSKTG 1071

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN--------IFIFEYKT---H 886
               +     ++               +  R+D+  ++            +I ++K+    
Sbjct: 1072 RWLLHPHPGAQSEFGLHTADLDSPG-VHIRMDRTFLAGDQPLAEGTSVRWIIDFKSSEHG 1130

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            +      +     ++ Q+  Y +  +       ++  L Y    ++      K
Sbjct: 1131 NPDHAYFDVQRAKYLGQMQTYAQAARAVGEQAQIMLGLYYPRMDRLIWWQDEK 1183


>gi|261343043|ref|ZP_05970901.1| ATP-dependent DNA helicase Rep [Enterobacter cancerogenus ATCC
           35316]
 gi|288314606|gb|EFC53544.1| ATP-dependent DNA helicase Rep [Enterobacter cancerogenus ATCC
           35316]
          Length = 674

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 99/668 (14%), Positives = 216/668 (32%), Gaps = 121/668 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    +        + K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKTVLQQLISTISNWKNDLMTPSQAAAIAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++      +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRN---QEVRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSKDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      + K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTEYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +   +        +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+       +++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRSKSMFTASFDMGLSQTLTGRGYDNLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  +  L       +  D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEVQRLAEREPVAAVRDLIHGIDYESWLYETSASPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V+LV     +  
Sbjct: 520 EIDEPMTLTQVVTRFTLRDMMERGESEEEADQVQLMTLHASKGLEFPYVYLVGMEEGLLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L+           +  +      + +   +D   ++ +   +  +          +  
Sbjct: 605 KELVFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVITAEERMHKGQANVANIR 664

Query: 720 ENTPLERE 727
                 +E
Sbjct: 665 AMLAKAKE 672


>gi|313665602|ref|YP_004047473.1| ATP-dependent DNA helicase PcrA [Mycoplasma leachii PG50]
 gi|312949842|gb|ADR24438.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma leachii PG50]
          Length = 722

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 113/618 (18%), Positives = 207/618 (33%), Gaps = 123/618 (19%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE-----FIKIRDRF--NTYKMFK 121
           L   FL      QK II   + + + +L E  KK+ D+       + ++     +  +  
Sbjct: 107 LEDKFLIIDSDDQKRIIKSALKESNIELNENDKKTFDKKILYKIKEWKEELVDPSEAILN 166

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
           +T         +   Y+    KN  LDF+DL I    L K+ +    I  K     +++L
Sbjct: 167 ATSTLEKNFAAIYRLYQNTLLKNNSLDFDDLQIYVYLLFKQNNE---ILNKWRNAYDYVL 223

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ +Q+ +I+ LT           +   L  VGD  Q+IYS+ GA+   +L   
Sbjct: 224 VDEFQDTNELQFSLIKFLT----------INTNHLTVVGDPDQTIYSWRGAKLDIILNFN 273

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +      +        I L  ++RST  IL + +      +  +     +      +   
Sbjct: 274 KTYSNAIS--------IVLNQNYRSTKQILDISNSFIKNNKFREHKEIFTNNKSGKKVV- 324

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                                             L + +S +  A  ++  I  ++    
Sbjct: 325 ----------------------------------LKECNSKTSEASYVSSKIKELVKQG- 349

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                       KDI +L R    +          K    I           +   IKD 
Sbjct: 350 ---------YHYKDIFILYRMNAWSQEFEKELANKK----IPFQLIGGIKFRERKVIKDA 396

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISK 480
           MA  + I S +D+LS   +L   +       I K I T       +++ I       +  
Sbjct: 397 MAFLKMI-SIKDNLSSQRVL-GLIPKIGNITIEKIINTANLNHLNIFDLITNENRTLLHS 454

Query: 481 FQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
               +  + E+   A        +  +    +L       +   +   + ++ ++   + 
Sbjct: 455 ITKNLDELIEVFKTAHQLYLDNTNIEEILKYLLIQSGYENKLKVKKEQDDLENINALYDQ 514

Query: 536 TLRNEQNSYS----SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
             R +++          +LI+ L++         +   ++V ++TVH AKGLE+ VVF+ 
Sbjct: 515 LKRFDEDFDPKYYSEENKLIAFLQEEALASDIDEAEQIDKVSLLTVHAAKGLENKVVFIT 574

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                VF  +                                  +     S  EE  R L
Sbjct: 575 GLNQGVFPSR----------------------------------LSETSISELEEERRAL 600

Query: 652 YVGMTRASDQLIICKHSN 669
           YV +TRA ++L +     
Sbjct: 601 YVALTRAKEELFLTYVKG 618


>gi|290513192|ref|ZP_06552554.1| ATP-dependent DNA helicase Rep [Klebsiella sp. 1_1_55]
 gi|289774403|gb|EFD82409.1| ATP-dependent DNA helicase Rep [Klebsiella sp. 1_1_55]
          Length = 673

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 99/654 (15%), Positives = 208/654 (31%), Gaps = 121/654 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVVLQQLISTISNWKNDLKTPSQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+A           + ++        K
Sbjct: 305 ------------ELGYGTELKVLSANNEDHEAERVA---------GELIAHHFINKTNYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +   +        +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        + ++               G         +
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMSRNKGLFTASFDMGLSQTLTGRGYESLTRFTHW 459

Query: 488 IHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +A+        D    I       +   S    E  +  +++   +        
Sbjct: 460 LREIQQLAEREPVAAVRDLIRGIDYESWLYETSPSPKAAEMRMKNVNQLFTWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V+LV     +  
Sbjct: 520 EIDEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVYLVGMEEGLLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +L            +  +      + +   +D   ++ +   S  +       
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVISAEERMHKGQA 658


>gi|237786046|ref|YP_002906751.1| putative ATP-dependent DNA helicase II [Corynebacterium
            kroppenstedtii DSM 44385]
 gi|237758958|gb|ACR18208.1| putative ATP-dependent DNA helicase II [Corynebacterium
            kroppenstedtii DSM 44385]
          Length = 1226

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 134/1005 (13%), Positives = 270/1005 (26%), Gaps = 216/1005 (21%)

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             L   +       +      ++ +  +      L++K      I  ++    + I +DE 
Sbjct: 248  LLKYQQEFYKRLSDKL----LMTYGQITAKATQLVRKYPE---IGQELRMRYHAIFLDEY 300

Query: 186  QDTSLIQWEVIRSLTED--FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            QDT+  Q   + SL         K +   P  + AVGD  QSIY F GA P  + +    
Sbjct: 301  QDTNYAQHAFLSSLFGSQSDLEEKGSVDKPVGVTAVGDPMQSIYGFRGASPGNLYQFLDD 360

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              +             L  SFR+  ++L + + +     +               +    
Sbjct: 361  FPRYQGGVLVPCEKRALSQSFRNPDEVLELANAISHDALSGGEGCGFDAVDADSSA---- 416

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                  L   + S            W     +L +      +A        +      + 
Sbjct: 417  ------LAPTLSSGKKGSAGVVSVKW-----ALDERDEVEWVADVFEQEYRS-----AMQ 460

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
            +  +    +     +LVRK                   I V  +    L D   ++++++
Sbjct: 461  NKSQGEPTKPFTGAILVRKNDHITPFAEAL----MKRGIPVGMSP-DSLDDIPEVREVLS 515

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--------------------- 462
            + R ++   DD + + +L SP +     DI  +  +  +                     
Sbjct: 516  VLRVVVDPSDDEATLEVLSSPRWRMGTRDIKTLSNRAKDLARGSDNQSGTRKSKHKEIDS 575

Query: 463  ------------------TETVYEYIQKF------------ANCGISKFQHVIKYIHELI 492
                                ++ + I               +N G  + Q +   +  L 
Sbjct: 576  IEVFEEKANELELPGDGTEVSLADAIADLGISSDQGNKSAFSNEGRMRLQALSAELRWLR 635

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRNEQNSYSSL 547
              +      D    I      R + ++R             LD   +           S 
Sbjct: 636  RQSMTVPLPDLLAQIESTLSIRTEVLARQDPSEDGAAGTIHLDRLRDVAEDF-TAHGGST 694

Query: 548  QELISELEQYPPT-----IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ------ 596
            QE +  L                S + ++V+I+TVH+AKGLE  VV +            
Sbjct: 695  QEFLEYLRAADEAPGTTIEAGEVSVHSDQVQILTVHSAKGLEWDVVAVPFCDDSTYNSPD 754

Query: 597  --------------VFSHKHIKKMHIMPSLNDDP--------GIPIWIPQSKSRNNIVSD 634
                           ++   ++   I+PS             G P++     +    +  
Sbjct: 755  LSSGSKQKKGKKKGNWTGTWLRSSKILPSALRGDPRSPANPLGFPVFKDTELATWKDIQS 814

Query: 635  LIKHLKKSTQEEYNR----LLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSF 689
              K  KK  Q    R    L YV +TR++ +L++  H  N +++    +   +  V +  
Sbjct: 815  AEKEYKKEIQSVDIRDSDFLFYVAITRSARRLLVSGHSVNPASKNYLQKSHRFFQVQNIV 874

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENT-PLEREETIKQLMDEQKIPKKLFSPIK 748
                 +        +           T H     P    +  +  ++      +  +PI 
Sbjct: 875  AGKLGIDVNARFEELQATHAEEPLRITAHSGGDHPTWNLDLTEPPLETVSDEPQSEAPIW 934

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQT---------FNRGLI-------IHKLLQV 792
                            +        L               + G +          L++ 
Sbjct: 935  PSDPLGERREAVDKAAELVRAAMEDLKAESADPGKGYTPQADPGTLAATWENETTALIEE 994

Query: 793  -----------------------IFTLPEH------------------KRKNFITSYCTK 811
                                   + +                      KR     ++   
Sbjct: 995  ARAAYVSHTDVPLGLELTTSEMMLASADPEAFARRRARPVPFKPNPYAKRGTAFHNWLEA 1054

Query: 812  N-----AKLWPAKEYKNLLLSITRL-LENPMMTTAMSCDSYSEVS------VSGKINCPK 859
                  A +   +    +  S   + +  P +         S  +      V        
Sbjct: 1055 ELGGASALIDDDELLGAMEDSDDDIPISQPELDHLKKAFMKSPWAGKTAWDVERPFTLNL 1114

Query: 860  KDIIISGRIDQISISQQ----NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
                I GR+D I  S++      FI ++KT      +          QL++Y++ L+   
Sbjct: 1115 GGYFIRGRMDAIFKSEKNGTPEWFIVDWKTGKKPTGQDMKRAE---IQLAMYKEALRRQL 1171

Query: 916  -----PNKSLVCLLIYVSEPKVFII-----PQNKLNKAFAEISTK 950
                 PN ++     YV   + +       P        + +   
Sbjct: 1172 ADTGTPNATIRAAFHYVRLNETYEPTDLPSPDELAQSVLSTLDDS 1216


>gi|313106801|ref|ZP_07793015.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 39016]
 gi|310879517|gb|EFQ38111.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 39016]
          Length = 1245

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 134/1055 (12%), Positives = 295/1055 (27%), Gaps = 140/1055 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-----QTQ 60
             LS  ES   + +      Y Q+  ++             +    + L+        + +
Sbjct: 219  ALSAPESLAALLEQ-GGDWYRQLDQLDAQARAVWRAARVELEALLRDLRPYLNGNSYRGK 277

Query: 61   CIEERFSLLSSFFLT-QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK--IRDRFNTY 117
              +E F           +   Q   + +    +     +++                   
Sbjct: 278  DSDETFDAWLQALADWSEGGEQPANLGKFGQTRIKLTAKRVAPEHAALRAIDAWAAHQEE 337

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +   +    L     +    E  K++   + F+DL+   +  L+       +   I ++ 
Sbjct: 338  RPDLAPHLLLHALGEVGRELEVEKQRRAEIGFDDLLSRLDRALQGPG-GERLAQLIREQF 396

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               LIDE QDT  +Q+ +   +           +    LF +GD KQ+IY+F GA+    
Sbjct: 397  PVALIDEFQDTDPVQYRIFERIYRIAADPGEPQARETGLFMIGDPKQAIYAFRGADIHTY 456

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            LR +            +     L  +FRSTA ++   ++ F+  E     +         
Sbjct: 457  LRAREA---------TRGRHYTLGKNFRSTAAMVAAANRCFAFAEEHPRGAFRFAREGLE 507

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                   V      E+++            +  +    L   +    +A R A  I   +
Sbjct: 508  NPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLDAEAGVLGSAAYRQEMAERSASAIRRWL 567

Query: 358  ------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                          G  R ++  DI +LVR R +      +   L      SV  +DR  
Sbjct: 568  SLADLGRAGFADEQGGWRALRPADIAILVRGRAEA---EAIRSALAARRLASVYLSDRDS 624

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D     DL+   R       D      L +   +     + ++           E   
Sbjct: 625  VFDSQEAADLLHWLRACADPGADALLRVALATRSLHLDWATLERLNQD--------ELFW 676

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            +        ++   +    L  + +  +  +    +L    G +   +         L E
Sbjct: 677  ERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLLRHADGERSLTNLL------HLAE 730

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            +L          ++ ++ L  +++           ++ + ++++T+H +KGLE P+V L 
Sbjct: 731  WLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHKSKGLEYPLVLLP 790

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               S      +               +     +        +   +        E  RLL
Sbjct: 791  FICSWRELDGNSGAPASFHEDGAAGRVIELARRK----EQAARAYEQANDERLGEDMRLL 846

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-----------------VYDSFHNDER 694
            YV +TRA   + +      ++  KS +     +                    +   + R
Sbjct: 847  YVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCLAALRGECR 906

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               ++     + + ++A                     +     +  +  + + +D    
Sbjct: 907  EIVVEPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQLQASAGLDDDEALE 966

Query: 755  YILNPSTIDTKGKTNLESLLS------------------DNQTFNRGLIIHKLLQV---- 792
               +   I  +  T  E   S                    +    G  +H LL+     
Sbjct: 967  SDESQEPISAEEATFHEEGRSAEQPPVAHASEMRDDLHRFPRGPAPGTFLHGLLEWAGRE 1026

Query: 793  ---IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLENPMMT---------- 838
               +      +R+  +   C        A+     L       L  P             
Sbjct: 1027 GFDVARADAQRRRELVARRCDLRGWKDWAEPLDLWLEQYLAEPLRWPGGETSLAGLVAYQ 1086

Query: 839  -----TAMSCDSYSEV------------SVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
                    +    +E             +    +     + +  G +D +   Q   ++ 
Sbjct: 1087 VEMEFWFATHQVQAEAIDALVRRHTLGGAARPTLAPTLLNGMFKGFVDLVFEHQGRFYVA 1146

Query: 882  EYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDS---------YPNKSLVCL 923
            +YK++     +  + P           +  Q  +Y   L            Y       +
Sbjct: 1147 DYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALHRQLKARLPDYDYDRHMGGAV 1206

Query: 924  LIYVSEPKV------FIIPQNKLNKAFAEISTKIP 952
             +++   +       F  P  +L +    + +  P
Sbjct: 1207 YLFLRGARAATQGLHFERPPRELIERLDALFSGQP 1241


>gi|92113296|ref|YP_573224.1| exodeoxyribonuclease V, beta subunit [Chromohalobacter salexigens DSM
            3043]
 gi|91796386|gb|ABE58525.1| exodeoxyribonuclease V, beta subunit [Chromohalobacter salexigens DSM
            3043]
          Length = 1269

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 124/990 (12%), Positives = 280/990 (28%), Gaps = 134/990 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             L+  ++ E   +  W            +   ++   +    +    L         E+ 
Sbjct: 249  ALAARQALEDSLRQAWDREAIAGCLNEAFSRGALNRNSYKPDELDTRLAAF------EQW 302

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             +   +   T     +  +   ++ K +    +         +       T     +   
Sbjct: 303  LATFEADDGTTDSQGRFWLSQAKLEKATKKGHDVPTHPFFARLDELAETATPFDVLAPRL 362

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN----HIL 181
                   + A +   K++  + +F DL+ + +  L   + +    +++   I       L
Sbjct: 363  LAHARDTVAAMFAAEKRRQGLWEFGDLLQDLDAAL-DPEAAPEAAWRLAGRIRQALPVAL 421

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT  +Q+ +   +           +   TL  +GD KQ+IY+F GA+ +  L  +
Sbjct: 422  IDEFQDTDPLQYRIFSRIYR----APEADADTTTLLMIGDPKQAIYAFRGADIETYLAAR 477

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            R    R T          L  +FRS+  ++  V+++F+      G  E     +  +  +
Sbjct: 478  RETPSRFT----------LTRNFRSSVAMVEAVNRLFARHPTPFGSDEIPFVEVAAKGQK 527

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD- 360
                         +   D Q      +W    +   +    + +A      +   +    
Sbjct: 528  A-----------RLCNADGQEVAALGAWWPGDERHAKADYQASMASAARAEVQRALEGGW 576

Query: 361  -TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              +   G +R ++  DI +LVRK  +   +    R L      SV  ++R  + D     
Sbjct: 577  HFVDEKGGQRDVRPADIAILVRKGSEALAVR---RALAEGGIRSVYLSERASVFDTALAF 633

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            +L+ L   +     D      L + L N +   +  +           E   +      +
Sbjct: 634  ELLQLFEAVAQPRQDARLKAALATRLLNDNPAALETLLAD--------ELAWEREVERFA 685

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
             +    +    L  +            +     G +             L E        
Sbjct: 686  DYHRQWQRRGVLPMLRAVMRDFRVAERMGARDDGERALTDLL------HLGELAQTVSAR 739

Query: 540  EQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                ++ L+     L     +     + +   ++ + V+++T+H AKGLE P+V L    
Sbjct: 740  LDGEHALLRWWHRALVEGTRQLDAEAVSQRLESDEDLVKVVTIHKAKGLEYPIVLLPFVC 799

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                +        +           +             + +   +++  +E  RLLYV 
Sbjct: 800  DYRPAEPERGTGLLEWRDPRHGRALVH--------GADDEQLAAAERARLDEDVRLLYVA 851

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            +TRA+    +           S       +        +                 A   
Sbjct: 852  LTRAAHACRLGVAHLGRGRGTSGCLHETALGRLLGCEADDQAHDVRERLAAALSVEACPA 911

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--------- 765
               H                    I    +    + +     L P+  +           
Sbjct: 912  PPGHRLRVRHALPAVASARRFNGGIDDDWWIASYSALIVDARLAPAGEEASMTWDAPATL 971

Query: 766  -----------GKTNLESLLSDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCT-- 810
                        +  + +L    +    G  +H LL+   +  L E   ++ +    +  
Sbjct: 972  DVEVSREQDPVPRPAVRTLRDFPRGPRPGTFLHGLLEAVDLDRLREPAYRDELQRLVSTR 1031

Query: 811  KNAKLWPAKEYKNLLLSITRLLENP-------------------MMTTAMSCDSYSEVSV 851
             +   +  +    LL  +   L  P                    +   +         +
Sbjct: 1032 LHLGGFEPEWAPLLLDWLCTALPTPFPGHAGTEIRLDGLAAWRPELEFWLPAHQAWSAPL 1091

Query: 852  SG-------------KINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIP 897
                           ++   K + ++ G ID +        ++ ++K++H      ++ P
Sbjct: 1092 DALVSAFEPLPEPRPRLAPRKLNGMLKGFIDLVFEAEDGRWYVLDWKSNHLGDAPADYRP 1151

Query: 898  Y---------THIAQLSIYEKILKDSYPNK 918
                       +  Q  +Y   L      +
Sbjct: 1152 EALAEAMVEHRYDLQYVLYVLALHRLLTAR 1181


>gi|326336039|ref|ZP_08202215.1| UvrD/REP helicase subfamily [Capnocytophaga sp. oral taxon 338 str.
            F0234]
 gi|325691836|gb|EGD33799.1| UvrD/REP helicase subfamily [Capnocytophaga sp. oral taxon 338 str.
            F0234]
          Length = 1066

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 135/874 (15%), Positives = 290/874 (33%), Gaps = 122/874 (13%)

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK-------STLASLTLAKYL 133
            +K + +++I KK P + + L ++Q   + +          +         +  L + K L
Sbjct: 295  EKPLYSKDIQKKEPVVAQLLDENQAWIVDLLQSVKKSYWLEQFYKRLTRNVTLLAVLKNL 354

Query: 134  NAHYEEAKKKNCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                   K++  +L   +F  +I  T       +   +I  KI     H  IDE QDTS+
Sbjct: 355  QEEILAIKEQENILPISEFNSIIHQTII----NEPFPFIYEKIGIRYQHYFIDEFQDTSI 410

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +QWE +  L  D    +N +    +L  VGD KQSIY + G   +   +   +  K    
Sbjct: 411  LQWENMLPLIADAVHSENLNKQHGSLLLVGDAKQSIYRWRGGRAE---QFIDLYNKDRIP 467

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS------TTTIRHRSSRIGQ 304
               +  ++ L  ++RS  +++   + +F+       L +          +++    +  +
Sbjct: 468  FYIEQQVVNLEYNYRSGKEVIAFNNDLFAYVALESSLFQSERYKKLYEESVQKIPEKGAK 527

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             G V +              ++   +   +++  E+            I  +        
Sbjct: 528  GGFVSIEFVEKQTSTDISLEEEAEESEEEENIYIETIEKY--------IKEVKNEG---- 575

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                     KDI +L R+ K+   I             +V+ ++  +L +   I+ L+ L
Sbjct: 576  ------YSDKDICILSRRNKECTEIAEKL----ASKGYNVISSEALLLKNVPEIQFLIHL 625

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
                L Q ++   + +L S               +      ++ ++ K+A+  +  F   
Sbjct: 626  IAISLYQNNEKEKIELLFS-------------YAKVKNLTDIHMFMSKYAHEPVEVF--- 669

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
                   +      S    ++       G    +          L +FLN     +    
Sbjct: 670  ------FLAKGFSLSYFHLYS--FYEGIGYAIQVFGLAKPSDAYLSQFLNVIYEYKSIRN 721

Query: 545  SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             ++ +  +  E+    +        + + IMT+H +KGLE PVV       ++ S K I 
Sbjct: 722  GNIADFPAFWEEKADKLAITAPEGVDAITIMTIHKSKGLEFPVVIYTHVNDKLRSAKDIL 781

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
             + + P   +     +            + +++  +     +    +YV MTR  D L +
Sbjct: 782  WIEVAPEKYNGFKHLLIDDYEGLEEVDANIVLQQSEMELL-DTINTMYVAMTRPKDVLYV 840

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                   N+K                    + ++      +K  W   +      +  PL
Sbjct: 841  ISDLPKKNKK---------------ERITNLSELLKLYLESKGVWQEGQARYTFGKLFPL 885

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
            E  E                S       +   + PS               + +   RG 
Sbjct: 886  EENER--------------ESITYIPFKQRSTMTPSYT-IVTNAGTMWNTENGKAIERGN 930

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
            ++H++L  I  + E      +  +           +   L   +  ++ NP++    + +
Sbjct: 931  LLHEMLGKI--ITEADIPEVLQQF--FIEGRITEAQINPLTSQLKEVVTNPLIRDYYTSN 986

Query: 845  SYSEVSVSGKINCPKKDIIISGRIDQISISQQ--NIFIFEYKTHHHVPQEIEHIPYTHIA 902
                +    +      + +   R D+++  +Q     I +YKT        +  P  +  
Sbjct: 987  YI--IYNEREWLDQAGEYL---RPDRVAYQEQKREAIIIDYKTG-------DDHPQ-YQT 1033

Query: 903  QLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935
            QL  Y ++L+       +    L++++E     I
Sbjct: 1034 QLKRYVQVLEQM--GWRVGKSFLVFINEEITVKI 1065


>gi|183221448|ref|YP_001839444.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167779870|gb|ABZ98168.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 678

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 90/596 (15%), Positives = 188/596 (31%), Gaps = 124/596 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +A  +   YE+  K+   +DF+DLI+    LL +      I     ++  + L+DE QDT
Sbjct: 169 VAAEIFPLYEDGLKEKNAIDFDDLILLPKRLLAEFPE---IAAYYQRKHEYFLVDEFQDT 225

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q+E +               +   L  VGD+ QSIY+F G+  + +L  +R      
Sbjct: 226 NQLQYEFLSLF----------RGNSDNLCVVGDDDQSIYAFRGSNVQLILNFEREFPH-- 273

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   ++ L  ++RST+ I+   + +       +  +  S                 
Sbjct: 274 ------AKVVRLLENYRSTSLIIQAANSLIQNNIGRKEKTLYSRIPSA------------ 315

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                           ++  +    D   +       A  +A  I  ++          K
Sbjct: 316 ----------------ERVEYYETADEREE-------AIFVAGRIQTLL---------IK 343

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              + K+I +L R    +       R    +  I       +   D   I+D ++  R++
Sbjct: 344 NEFKGKEIAILFRTNFQSRPFEEELR----NRSIPYKVVGGYNFFDRKEIRDCISYLRYV 399

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG---------- 477
            + +DD S + ++  P        + K+         ++YE   K               
Sbjct: 400 ANPKDDYSLLRIINYPKRGIGPGTMQKLQEEAFTHKLSLYEIFHKMIESPDYLPEVKAKV 459

Query: 478 ISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDE 531
             +    ++ +       A           ++      ++       E      I  L E
Sbjct: 460 RQEIYQFVEMVDAFKKKFAMSQKLAPVLREMITQIGFEREISMEETEEKVVKARIYNLSE 519

Query: 532 FLNFTLRNEQNSY----SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +N     E+       +++ + +  L        +    +   V+++T+H +KGLE  +
Sbjct: 520 LVNMLSFFEEEEGREGKATIFDFLQRLVLLMEDEPKEDEEDR-RVQLLTMHQSKGLEYDL 578

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFLV     +  +  + +        +                                 
Sbjct: 579 VFLVGLEEGILPNSRVIEEEGEVVDEE--------------------------------- 605

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            RLLYVGMTR   +L +          +  +      + +   +      ++  + 
Sbjct: 606 RRLLYVGMTRPRRKLYLTSARTRRKFGEQIESAPSRFLNELSQDAVLFFPMETKDR 661


>gi|261414687|ref|YP_003248370.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371143|gb|ACX73888.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325603|gb|ADL24804.1| ATP-dependent DNA helicase, UvrD/REP family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 803

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 117/687 (17%), Positives = 202/687 (29%), Gaps = 139/687 (20%)

Query: 93  SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
           +  L +++  S  E     +      + +    +      +   Y   +KKN  LDF+DL
Sbjct: 171 AEHLADEVGASAAENAPAVENEKREHLVELADEAPDKWMAVYYRYLYEQKKNYALDFDDL 230

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           I+ T  +L+          K  + + ++++DE QD    Q+ +   L+            
Sbjct: 231 ILVTLYILENFPEK---LDKWRKRMMYVMVDEYQDIDGQQYCLADLLSSY---------- 277

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
            + LF VGD  Q+IY + GA+  R+L   +          +    I L  ++RST  IL 
Sbjct: 278 HKNLFVVGDPDQTIYGWRGADINRILEFDQ--------FHKGTKTILLQNNYRSTPSILK 329

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
           V D V    +               R  R G    V    +   +               
Sbjct: 330 VPDAVIKNNKYRIEKV--------LRPVRAGGKTPVFYHAKNTREE-------------- 367

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                        A+ I   I N +        G    +  KDI VL R    +  +   
Sbjct: 368 -------------AKWIVERIQNAVQNSVKNGAG---GVHYKDIAVLYRMHSQSRSVEEA 411

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                    I               IKD++   R ++   DDLSF+  + +P   F    
Sbjct: 412 LMSE----SIPYKVYSGVGFYQRKEIKDIICYLRMLV-YADDLSFIRTVNTPKRQFGPKK 466

Query: 453 IFKICT-QRHETETVYEYIQKFANC----------------------------------- 476
           +  +          +YE + +                                       
Sbjct: 467 MAILQAFADTRKVGLYEALLEIVYEAGRLNDVAPDVTTQAELSSVGNDHRKIDFDCKEFL 526

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
             S     +K I +     +     +  + +L   K  +        + +D L E     
Sbjct: 527 SRSNVVEYVKLIEKYRSRYKDMRVSELLSKMLRETKYEEMLRLDGDEDRLDNLAELKQGI 586

Query: 537 LRNEQ--NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
           L  E      +SL E +  +  +  T     S   + V++MT+H AKGLE P VF+    
Sbjct: 587 LEFENYYEEDASLDEYLQNIVLF--TNADEDSQEKDRVQLMTIHNAKGLEFPYVFVCGLN 644

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              F                                    + +   K   EE  RL YV 
Sbjct: 645 EGFFP-----------------------------------VKRVQNKMQLEEERRLAYVA 669

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            TRA + L +    +    +  ++     ++  +    +  +       +    +IA   
Sbjct: 670 FTRAENVLCLSDAEDGVAGESGSRYPSRFLLEMNMDELDVARGFSDDLLLAARAFIAESD 729

Query: 715 STHHPENTPLEREETIKQLMDEQKIPK 741
                 N   E E              
Sbjct: 730 RNRDLMNDFDEDESLGAVKKAPTAEFA 756


>gi|269793285|ref|YP_003318189.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100920|gb|ACZ19907.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 1125

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 138/935 (14%), Positives = 254/935 (27%), Gaps = 128/935 (13%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            + E + + +  L       +++        G+   L K +  Q   + +  +     L  
Sbjct: 221  TREDLKRLVRDLLGTMRDWLHQVGQAIHHLGSVADLPKGELPQLLEEIRREDPALEELLE 280

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKS---------------------QDEFIKI 110
                     + N+          +L + +++                      ++    +
Sbjct: 281  AVEMGLGLQEVNLNKTGYRSVKEELHQAVEEMGLPWVVPSDKNGPFSVFKKKVKERLSTL 340

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNA----HYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                +     +  +        L A     ++  +  +  L F+DLI     LL+    S
Sbjct: 341  TGLCHLDLSGQGEVRLWRELNRLVALGWQAFDHMRLSSGQLSFQDLISTACGLLEGEGPS 400

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                        H+LIDE QDT  +Q+ +  +L                LF VGD KQSI
Sbjct: 401  P---------FKHVLIDEFQDTDGVQFRLAEALMR----------RGAHLFVVGDLKQSI 441

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F  A+     +  R              ++ L  S RST  ++ +V+++F        
Sbjct: 442  YRFRNADLSLFDKVIR----------LAPVVVSLAESRRSTPQVIDLVNRIFGSAFAHGI 491

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                T + +E +    + + +P     T    +  +        
Sbjct: 492  -----------------DPSTSEEYEPLRPLTEDRSDPLPVVVTPDEGAQSKGEVLRSAC 534

Query: 347  RRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              +A     M        + +  R  +  D  VLV  R     ++     L     I   
Sbjct: 535  ASLAKEFLRMHREGHPVRDREGTRPCRWSDFAVLVPTRGSYQAVSAALEDL----NIPHA 590

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                         +DL AL   +      L  + +  SPLF      +            
Sbjct: 591  LCSSMDFASRFESRDLEALVAALGGDRSPLGALKVAMSPLFGQRMYHL------------ 638

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
                     +   S  +   + I  L  I+           +            +    V
Sbjct: 639  -------RQSEVGSLAKAGGEVISSLSPISDAAGASWALDHLFKPLHWLSNVRGQDRTRV 691

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLE 584
            +  L       +  E +     Q     L Q              + VR+MTVH AKGLE
Sbjct: 692  LLNLRHARELLMEYEAHMGPGAQGAGEYLTQALGNRVEEPEIPPDDAVRVMTVHAAKGLE 751

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             P+  +           +  +  I   L   P   +    +     +        + +  
Sbjct: 752  FPITAV--LLKPSQRGGNGDRYRISRRLLAVPSSSLVEDAAGEEGVLAKASSLLEESAEA 809

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             E  RL YV  TRA D+LI+                W   V  +   D        T   
Sbjct: 810  WESLRLFYVACTRARDRLILVMPDGKDR--------WGQEVTRALGEDAVRSLRIETPPQ 861

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
               E  A       P + P      ++       + K   +  +    +           
Sbjct: 862  APVERGAESGIGTQPVDAPSRAPALVQMSATSYSLFKFCPAAYRMTFRQ---------GL 912

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC-TKNAKLWPAKEYKN 823
              K   + +       + G + H ++      P+  R   +      +            
Sbjct: 913  DPKWGGDFVHRGPGGADLGTLAHWIMSRWDGDPDTIRGAILREEVPQEVLMALEDPGLPE 972

Query: 824  LLLSITRLLENP---MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI 880
            L+  +     +P        +   +  EV     I        + G +D          I
Sbjct: 973  LMGWLRDFARSPLGERFRDLLRRGAGREVPFRVTIQ---GGFRMVGAMDLYLDDPSGPVI 1029

Query: 881  FEYK-THHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
             +YK TH   P     I   +  Q+  Y   ++  
Sbjct: 1030 RDYKITHQDNP-----IQELYRHQMLFYGLAVRRI 1059


>gi|157368405|ref|YP_001476394.1| ATP-dependent DNA helicase Rep [Serratia proteamaculans 568]
 gi|157320169|gb|ABV39266.1| ATP-dependent DNA helicase Rep [Serratia proteamaculans 568]
          Length = 674

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 99/646 (15%), Positives = 211/646 (32%), Gaps = 121/646 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  + +      + + +    +    + D     ++ +S      L  +   
Sbjct: 112 DQLALLKELTEKWLENDKTLVAQLISTISNWKNDLVDPQKAMELARSERD--KLFAHCYG 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y    +   VLDF+DLI+    LL++ +    +R +    I ++L+DE QDT+  Q+E+
Sbjct: 170 LYHAHMRACNVLDFDDLILLPTLLLQRNEE---VRERWQNRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +                VGD+ QSIYS+ GA P+ ++  K              
Sbjct: 227 VKLLVGN----------RARFTVVGDDDQSIYSWRGARPQNLVLLKEDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S              G  +  + V 
Sbjct: 269 QVIKLEQNYRSSERILKAANILIANNPHVFEKRLFSEL------------GYGEELKVVT 316

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           + ++                          A R+            + ++   +     D
Sbjct: 317 ANNED-----------------------HEAERVV---------GELIAHHFVKKTNYGD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L   +        +I    +          IKDL+A  R + +Q+DD 
Sbjct: 345 YAILYRGNHQSRLFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNQDDDS 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++                    Q    ++
Sbjct: 401 AFLRIVNTPKREIGPATLQKLGEWANQRNKSLFRASFDLGLSQHLTGRGLESLQRFTHWL 460

Query: 489 HELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----E 540
             +  +A+        D    +       +   S    E  +  ++    +        E
Sbjct: 461 DGIAQLAEREPIAAVRDLIRGVDYESWLFETSPSPKAAEMRMKNVNTLFGWMTEMLEGSE 520

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 521 LDEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       +   +E  RL YVG+TRA  
Sbjct: 581 QSSID-----------------------------------EDNVDEERRLAYVGITRAQK 605

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +LI           +  +      + +   +D   +  +   S  +
Sbjct: 606 ELIFTLCRERRQYGELVRPEPSRFLLELPQDDLAWESERKVVSPQE 651


>gi|115372354|ref|ZP_01459663.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|115370567|gb|EAU69493.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
          Length = 774

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 116/755 (15%), Positives = 217/755 (28%), Gaps = 144/755 (19%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------QQASQTQCIEERFSLLS 70
            + ++P     V+  NK      E     +  +A  L        A+     E     L+
Sbjct: 51  VRRVFPWRILAVTFTNKAAREMRERLVQLLGAQAHELVVSTFHSSAAMILRREAEAVGLT 110

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-- 128
             F+      Q NI+ + + +   +   + ++      + ++        +     L   
Sbjct: 111 RSFVIYDDGDQLNIVKRAMREARVEPSMQPREILHRIDQEKNAARLPDAMQVDADDLRGM 170

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + K     Y+   +    +DF DL++    L +       +  K  +  +H+L+DE QDT
Sbjct: 171 VVKRTYQTYQRLLRAANAVDFGDLLLLLVSLFRDHPE---VLEKYRRRFSHVLVDEFQDT 227

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q+E++R L                L  VGD+ QSIY + GA    +L          
Sbjct: 228 NPVQYELLRLLA---------PPPGANLVVVGDDDQSIYRWRGASVDNILGFPNTYP--- 275

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +++L  ++RS   IL     V S           S                 
Sbjct: 276 -----GAKVVKLEQNYRSDQAILEAAHAVISKNRRRMAKKLWS----------------- 313

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                       +   +        D   +       A+ +A  I  +            
Sbjct: 314 -----------ERQRGEHLQLLILRDERAE-------AQEVARQIHALQREGF------- 348

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             I+   + V  R    + ++    R      ++           D   ++D  A  R +
Sbjct: 349 --IKYSGMAVFYRVNAQSRVLEEALR----LARVPYTLVSGRSFYDRAEVRDAAAYLRLM 402

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKF 481
           ++   D   + ++ +P     +  + ++     H+  ++YE I +             + 
Sbjct: 403 VNPRSDADLLRIINTPARGIGDTTVERLTTHADHQGISLYEAIAQPEQIPALNSAAVRRL 462

Query: 482 QHVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTL 537
             V   +  L   AQ           +L   +  +   +   +E     + L EFL    
Sbjct: 463 AGVHTLLASLNSFAQGAKDAASAVDEMLRETRLVESLTAEGSDESLTRAENLREFLGAAQ 522

Query: 538 RNEQNSY----------------------------SSLQELISELEQYPPTIKRAHSANH 569
             + N                              + +  L S LEQ             
Sbjct: 523 EFDLNRAAASVAAAAAVPAEPEEPLPADLDAAPLSADVPPLQSFLEQISLVGDADAEVGE 582

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            +V +MT+H AKGLE   VFL      VF H                             
Sbjct: 583 GKVALMTLHAAKGLEFDAVFLTGMEDNVFPHSRALVGEDPDEG----------------- 625

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                           E  RL YVG TRA  +L +      S   +         + D  
Sbjct: 626 ------------EEMAEERRLCYVGFTRARRRLFVSLAQCRSLFGELRYNPPSRFLRDVP 673

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                +              +A    ++  +++P 
Sbjct: 674 PTLFGIDPSVQEAPRPVAAPVAPRRRSYEDDDSPR 708


>gi|121603267|ref|YP_980596.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120592236|gb|ABM35675.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 709

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 112/713 (15%), Positives = 229/713 (32%), Gaps = 119/713 (16%)

Query: 20  LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF-LTQKF 78
           + P     ++  NK  +   E     I K A+ +   +             +   L  +F
Sbjct: 55  MKPEQIAAITFTNKAAAEMRERAKSLIGKSAKGVLICTFHALGVRMLRQDGAALGLKPQF 114

Query: 79  TPQKNIITQEINKKSPDLKEKL--KKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLN 134
           +   +     I K +    +    ++ Q      +++       ++  +     L   + 
Sbjct: 115 SILDSDDVTSILKDAGGSTDVATARQWQWTISAWKNQGLNAAQAEAQASGDEERLIARVM 174

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
            HYEE       +DF+DLI     LLK+ +    +R K    + H+L+DE QDT+  Q+E
Sbjct: 175 GHYEERLAAYQSVDFDDLIGLPLKLLKEHED---VRSKWQASLGHVLVDEYQDTNATQYE 231

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           V++ L  +               AVGD+ QSIY + GA    + +  +            
Sbjct: 232 VLKLLVGE----------RGRFTAVGDDDQSIYGWRGATLDNLKKLPQDFPT-------- 273

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +++L  ++RST+ IL   + V                                L+ + 
Sbjct: 274 LKVVKLEQNYRSTSAILRAANNVIGPNPK--------------------------LFPKT 307

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
           +     +  P +              S    A R+   I ++    ++   G++   + K
Sbjct: 308 LFSELGEGEPVRVV---------DCDSEEHEAERVVARIQSLRAEGSLLPEGRQYR-EWK 357

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  VL R            R       I    +      D   IKDL +    +++ +++
Sbjct: 358 DFCVLYRANHMAKPFEKAFR----KANIPYKVSGGQSFFDRAEIKDLCSWMVLLVNNDNN 413

Query: 435 LSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHVIKY 487
            +F+  +K+P        +  +         +++E +             +   Q   +Y
Sbjct: 414 QAFIRSIKTPKRGIGHTTLGALNTFADTYKLSLFESLFSNSLGSVLPAKAVGSLQEFGRY 473

Query: 488 IHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLR 538
           +++L + A+ C   +    F T  L      +       +E         + +F ++  +
Sbjct: 474 LNDLEYRAKRCVGAEDARIFLTDWLKEIDYEKHLYDGEDSEKVASARWSNVMDFCDWMSQ 533

Query: 539 N-----EQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                 +  S +++++    + +        +       + N V + T+H +KGLE P V
Sbjct: 534 RCGGQIDDTSGATIEKPTKTMLEVVQTIALLSTISEREGDQNVVTLSTLHASKGLEWPHV 593

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            L      +   K                                           +E  
Sbjct: 594 VLAGVNEGLLPFKLDDDDGQNTDSI---------------------------ALRLQEER 626

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           RL+YVG+TRA   L +         +          + +   +   +K+    
Sbjct: 627 RLMYVGITRAQRTLAVDWLRKRKKGRDLIAGVPSRFIAEMALDKATIKEDPRE 679


>gi|226946792|ref|YP_002801865.1| ATP-dependent DNA helicase Rep protein [Azotobacter vinelandii DJ]
 gi|226721719|gb|ACO80890.1| ATP-dependent DNA helicase Rep protein [Azotobacter vinelandii DJ]
          Length = 669

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 95/636 (14%), Positives = 212/636 (33%), Gaps = 125/636 (19%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
             +  +  + +++   +++ I   +  +  +  +        A  +  HY+   K    +
Sbjct: 127 AGDDGADQVIQQIGAWKNDLILPDEALSRARNPREQN-----AAIVYLHYQRTLKAYNAV 181

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI+    L + +     +  K  Q I ++L+DE QDT+  Q+ +++ L        
Sbjct: 182 DFDDLILLPVKLFESQPE---VLEKWQQRIRYLLVDEYQDTNASQYLLVKLLVG------ 232

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                      VGD+ QSIY++ GA P+ +++ K               ++ L  ++RST
Sbjct: 233 ----IRHQFTVVGDDDQSIYAWRGARPENLMQLKSDYP--------SLKVVMLEQNYRST 280

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           + IL   + + +   +                         QLW ++    +        
Sbjct: 281 SRILRCANVLIANNPHVFDK---------------------QLWSEMGHGDEI------- 312

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   + +  +    A R+A  I  +           K      D  +L R    + 
Sbjct: 313 -------RVIRCRNEEAEAERVAMEILTLH---------LKTGRPYSDFAILYRGNYQSR 356

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           L+    +     ++I    +          +KDLM+  R +++ +DD +F+ ++  P   
Sbjct: 357 LMEMKLQ----HHQIPYRLSGGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVINVPRRE 412

Query: 448 FSEDDIFKICTQRHE-TETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSP 500
                + K+     E   ++YE                 +    ++++  +        P
Sbjct: 413 IGSATLEKLGQHAGELNLSLYEAAGDPALAGHLDGRYCERLARFVRWMDGVRRQCAQNDP 472

Query: 501 HDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELIS 552
                 ++              ++      +  +   +      L  +++   +++E I 
Sbjct: 473 IAALRSMVMDIDYENWLRQNASSDKIADVRMGNVWFLVEALKNTLERDEDGGMTIEEAIG 532

Query: 553 ELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           +L        ++        V+++T+H +KGLE P VF++    ++  H           
Sbjct: 533 KLVLRDMLERQQEEEEGAEGVQMLTLHASKGLEFPHVFIIGVEEEILPH----------- 581

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                      ++  T EE  RL YVG+TRA   L++   +   
Sbjct: 582 ------------------------RSSIEADTIEEERRLAYVGITRARQNLVLTFAARRK 617

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
              +         + +   +D   +  +      K 
Sbjct: 618 QYGEIIDCAPSRFLAELPQDDLIWEGQEDAPVEAKA 653


>gi|311108181|ref|YP_003981034.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8]
 gi|310762870|gb|ADP18319.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8]
          Length = 1147

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 151/998 (15%), Positives = 270/998 (27%), Gaps = 141/998 (14%)

Query: 13   YELIYKDLWPLPYFQVSDINKYV------SLSMETGNPTILKKAQTLQQASQTQCIEERF 66
             E I +DL  L         + +      + +         K    L    +     E  
Sbjct: 216  AEAIGEDLDALSEAMPYGWAEALCGPARLAAANLQDGEAENKLLALLDWTEEPPPDAEAL 275

Query: 67   SLLSSF---FLTQKFTPQKNI-------ITQEINKKSPDLKEKLKKSQDEFIKIRDRF-- 114
             L  +     LT   T +K +             +      E          ++      
Sbjct: 276  ELWQAVAHLLLTGTGTLRKTVNKNLGFPAKCAHKEPFVAWLEAADADAAWVRRLHAVRDV 335

Query: 115  ----NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
                 T   ++   A L       A           +DF ++       L   D    + 
Sbjct: 336  PAPHFTDAQWEVLGAQLMTLALAVAQLRLRFADTGEVDFIEIAQRAAAALGSADDPGELL 395

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             K+D  I H+LIDE QDTS  Q +++R+LT  +  G       R+LF VGD  QSIY F 
Sbjct: 396  LKLDASIRHLLIDEFQDTSQTQLDLLRTLTSGWQQGDG-----RSLFLVGDPMQSIYRFR 450

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
             AE    L               +   + L  +FRS A I+  V++ F+     +     
Sbjct: 451  KAEVGLFLEV-----ADIGVGELQPDFLNLTDNFRSQAGIVEWVNQSFAQLLPRRS---- 501

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                           G +            +  P+         S    + A   A  IA
Sbjct: 502  -----------DAAAGAISYSPSTAFH---EALPEPAVRFHPAWSREGAAPAEAQAEDIA 547

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
                +++    I   G K       + VLVR R                  I     D  
Sbjct: 548  ---VDLVRQALIDHKGAKHP-----VAVLVRARSHLGN----LTRRLAQEGIRCRAVDLV 595

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK--------------- 455
             L     + DL+ L R +    D L+++ +L++P    +   + +               
Sbjct: 596  PLALRPVVADLVQLVRALSHPGDRLAWLSVLRAPYCGLTLTSLQRLFGDDHITPVPVLLE 655

Query: 456  ---------------------ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                                 +     +T                + + V   + +  + 
Sbjct: 656  RALRIAPQTAPAAAASAPQGSLFDAAPDTPETPAAQNVLGADEFERLRQVAAILLDKRNA 715

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            A       +   +     G   +         + L + +     +     ++L   I+ L
Sbjct: 716  AGAMPFAAWVESLWRRLGGPALYAGLSVANDAESLFQLIERLAPHGAIDVAALDTGIARL 775

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
               P     A   +   V IMT+H +KGL+   V L               +    S   
Sbjct: 776  FAAPD----AADEDSGAVEIMTMHKSKGLQFETVILYGLHRAPR-GDQAPLVRFEQSGGR 830

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                P+        + +   L     +    E +RLLYV  TRA  +L +  H +     
Sbjct: 831  VLFGPVKPRAETEADPLSRYLGAREARRASYEIDRLLYVAATRARKRLHLVGHVSVDEAS 890

Query: 675  KS-NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
                  +   ++   +          L       +    EW               + ++
Sbjct: 891  GQVKTPSSASLLGRLWPCLAVPTPPSLDGETMAPQADGPEWQGEPLRRVDRAGLAQLARM 950

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL--- 790
             D    P    +                    G+     L +       G + H  L   
Sbjct: 951  ADLVVSPGFGAAARG------------AWGDGGEHPAWQLEAGYDAA-IGTLSHAWLARI 997

Query: 791  -----QVIFTLPEHKRKNFITSYCTKNAKLWPAKEY--KNLLLSITRLLENPMMTTAMSC 843
                 Q        +R   +    T+        +   + +L ++   L +      +S 
Sbjct: 998  GQDGVQAWSADALAQRLPAMRRQLTRAGIPASQADAASEAVLETLQATLADERGLWLLSQ 1057

Query: 844  -DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE-----IEHIP 897
              +  E      +      + +   ID    ++    I +YKT    P E        + 
Sbjct: 1058 SGARREWP----LIDAAGKVSV---IDLALSTEDGWLIVDYKTGRPHPGEAPTAFATRMR 1110

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              H  QL  Y   +      ++    L +        +
Sbjct: 1111 QRHGDQLLRYCAQVTALD-GRTARAALYFPRARAWIDL 1147


>gi|209515754|ref|ZP_03264617.1| UvrD/REP helicase [Burkholderia sp. H160]
 gi|209503781|gb|EEA03774.1| UvrD/REP helicase [Burkholderia sp. H160]
          Length = 696

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 94/578 (16%), Positives = 183/578 (31%), Gaps = 130/578 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L    +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AAIVYRNYVATLHAYQAVDFDDLIRLPAELFASNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +       
Sbjct: 232 ACQYELVKLLAGKRAA----------FTAVGDDDQAIYGWRGATLENLGQLGKDFPN--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S                  
Sbjct: 279 -----LHLIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWS------------------ 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 316 -----------------EHGMGDTITVTGCNDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  +L R      +   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 350 RTNFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDICAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           +  DD +F+  + +P        +  + +   +   +++E +       + +   I   +
Sbjct: 406 NANDDPAFIRAITTPRRGVGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSPRQIEPMR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLR 538
               ++  L   A+  +       ++ A          F           + EF+ +  R
Sbjct: 466 AFCDFMQRLTDRAEKDAAGTLLNELMEAIHYEAYLYDAFDERQAQAKWQNVLEFIEWLKR 525

Query: 539 ------------NEQNSYSSLQELISE-------LEQYPPTIKRAH-SANHNEVRIMTVH 578
                       +E   Y +              ++             + + VR+ TVH
Sbjct: 526 KGTKEEPEHGSGSEATGYDTADGFGDTGKNLLGLIQTVALMSMLEGREEDPDAVRLSTVH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+       +                             
Sbjct: 586 ASKGLEYPHVFLVGVEEGIMPHRGGADDEPIDD--------------------------- 618

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
              +  EE  RL+YV +TRA   L +         +++
Sbjct: 619 ---ARIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|331655462|ref|ZP_08356455.1| ATP-dependent DNA helicase Rep [Escherichia coli M718]
 gi|331046783|gb|EGI18867.1| ATP-dependent DNA helicase Rep [Escherichia coli M718]
          Length = 690

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 114 AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 171

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 172 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 216

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 217 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 266

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 267 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKH 318

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 319 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 343

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 344 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 390

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 391 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 450

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 451 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 510

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 511 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 570

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 571 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 602

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 603 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 655

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 656 IWEQERKVVSAEE 668


>gi|224585735|ref|YP_002639534.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224470263|gb|ACN48093.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 674

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 98/617 (15%), Positives = 202/617 (32%), Gaps = 119/617 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +  +    Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QD
Sbjct: 162 RIFAHCYGLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L                   VGD+ QSIYS+ GA P+ ++   +     
Sbjct: 219 TNTSQYELVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +       S                
Sbjct: 268 -------LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS---------------- 304

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                              E        +   ++    A R+         T  + ++  
Sbjct: 305 -------------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q KD  +L R    + +            +I    +          IKDL+A  R 
Sbjct: 337 VNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCG 477
           + + +DD +F+ ++ +P        + K+        ++++                   
Sbjct: 393 LTNPDDDSAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDS 452

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
           +++F H +  I  L       +  D    I       +   S    E  +  +++  ++ 
Sbjct: 453 LTRFTHWLGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWM 512

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E +   +L ++++         +       ++V++MT+H +KGLE P V++V 
Sbjct: 513 TEMLEGNELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                  H+                                       +   EE  RL Y
Sbjct: 573 MEEGFLPHQSSID-----------------------------------EDNIEEERRLAY 597

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA  +L            +  +      + +   +D   ++ +   S  +      
Sbjct: 598 VGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQ 657

Query: 713 EWSTHHPENTPLEREET 729
               +       +R ++
Sbjct: 658 SHLANLKAMMAAKRAKS 674


>gi|260170417|ref|ZP_05756829.1| ATP-dependent helicase [Bacteroides sp. D2]
 gi|315918773|ref|ZP_07915013.1| ATP-dependent helicase [Bacteroides sp. D2]
 gi|313692648|gb|EFS29483.1| ATP-dependent helicase [Bacteroides sp. D2]
          Length = 1056

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 127/864 (14%), Positives = 263/864 (30%), Gaps = 108/864 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            KN  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KNWATKTSPRYADIINLANSSLMQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +    N       L+ +TN LL +      S+++  KI   I++++IDE QDTS +
Sbjct: 345  EEVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIHNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +       +      
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNSLNDHIEHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +++   +++F+   N                 +      V   
Sbjct: 451  --PIRVKTLATNRRSETNVIRFNNQIFTAAANYLNGVYKQQLGKDCEDLQKAYADVV--- 505

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                 Q   +   +     S+ +   +          +   + +++ +           +
Sbjct: 506  -----QESPRSTEKGYVKVSFLEPDEEHDYTEQTLISLGEEVKHLLTSG----------V 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  DI +LVRK K  P I         +    VV ++ F L   LAI  ++   RF+  +
Sbjct: 551  RLNDIAILVRKNKSIPRIADYF---DKELHYKVVSDEAFRLDASLAICMMLNALRFLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  ++ I EL
Sbjct: 608  NNKIA-------------RAQLAVAYQNEVLQKGLDWNTLLLLPAENYLPAAFLERIKEL 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      +    L  F +      Q++ S L   I
Sbjct: 655  R----LMPLYELLEELFSI------FEMNLIKDQDAYLFAFFDAVTDYLQSNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               ++   +           +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RHWDETLCSKTIPSGEVEG-IRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQ 763

Query: 612  --LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +   I      ++   +I  +     +     +   LLYV  TRA   LII    +
Sbjct: 764  TTPFNALDILPINYSTQMAESIYGNEYLQERLQLWVDNLNLLYVAFTRAGKNLIIWSRKS 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      D      +       +                   EE 
Sbjct: 824  QKGTMSELLANTLPIVAQEEGIDWEEDCYEQGQLCPSE-------------------EER 864

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            IK   ++     +        +        S         +E   SD++  NRG ++H L
Sbjct: 865  IKTSTNKLTQKPEKLPIRMESMRHDIEFRQSNRSADFIQGIEEEDSDDRFINRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSE 848
              VI T         I         +    E + +   +  +   +P +    S   ++ 
Sbjct: 925  FSVIET--AEDIDPAIERLI--FEGVIRNDEKEKVAREVAKKAFSSPEIQDWYS-GKWT- 978

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            +     I   +K ++ + R D++ +    + + ++K     P         +  Q+  Y 
Sbjct: 979  LFNECAIIYKEKGVLQTRRPDRVMMKDDQVVVVDFKFGKENPT--------YNKQVKGYM 1030

Query: 909  KILKDSYPNKSLVCLLIYVSEPKV 932
            ++L      K++   L YV E K+
Sbjct: 1031 QLLTKM-GYKNITGYLWYVDEEKI 1053


>gi|225020702|ref|ZP_03709894.1| hypothetical protein CORMATOL_00709 [Corynebacterium matruchotii ATCC
            33806]
 gi|224946648|gb|EEG27857.1| hypothetical protein CORMATOL_00709 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1095

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 145/993 (14%), Positives = 280/993 (28%), Gaps = 195/993 (19%)

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                LT       +++ +   K    L  +L +      + R + N   +         +
Sbjct: 172  VDTLLTLTAELDNHMVDERELKIESLLFAQLCEELPPAKRQRKKPNQKILGWQETQFHRI 231

Query: 130  -AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
                L    ++  K   ++ F + +     L  +      +   +      +++DE QDT
Sbjct: 232  ELLPLVTKLKDRLKDENLVTFGEQMSLAARLAVENPSVGKV---LRNRYKVVMLDEYQDT 288

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S  Q  ++RSL                + AVGD  QSIY + GA    + R        A
Sbjct: 289  SHAQRMLLRSLFA-----------GGAVTAVGDPMQSIYGWRGATAANLNRFVTDF---A 334

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
             +  +     EL +SFR+  ++L + + V +    A          +    S +     +
Sbjct: 335  IDPQEPAVKNELTISFRNPPEVLHLANAVATTVLGAPSDPNRPVQPLSSPPSAVAGDIQL 394

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
              +  +  +                             + +A T++ +            
Sbjct: 395  GYFPTIADER----------------------------QFVADTLAELYNNRDT------ 420

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
               +     VLVR+   T  I    +       I         L D   + D++A+   +
Sbjct: 421  --AKPFTAAVLVRQNAHTGPIAKEFQ----RRGIPYEIVGINGLLDVPEVADMVAVAIML 474

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------------------------- 462
            +   D  + + +L  P       DI  +  +  E                          
Sbjct: 475  IRPTDSAAALRILGGPAVGLGVRDIQALARRAGELSGRASSGKTTDSVDPAVKLEEEIAE 534

Query: 463  --------------TETVYEYIQKFANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLI 507
                                  +K++  G  +   +   +  L   +A   S  D F  I
Sbjct: 535  VLAADAENIVGLTDAIADLGEPEKYSEEGYRRLGRLSSQLRRLRQTVAAGSSLPDLFAEI 594

Query: 508  LGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL----EQYP 558
                  R + +SR      G      LD+             ++L +L+        Q  
Sbjct: 595  ERVMGIRTEVLSRENPRLDGAVGTIHLDKLHQEVANFATIPNTTLSQLLDYFTEARRQES 654

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP-------- 610
                       + V+I+TVH AKGLE   V ++   ++ +           P        
Sbjct: 655  GLELGEVQVRSDRVQILTVHKAKGLEWNTVCVLHANNRDYDKTRASTWLTNPAMVPSTLR 714

Query: 611  ----SLNDDPGIPI----WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                   D  G P+    W+          +  I+  ++S  EE  RL YV +TRA+ +L
Sbjct: 715  GDAAESGDTVGSPVLDTSWLENRAQLEAECAAHIEEFRQSLSEESTRLFYVAVTRAAQRL 774

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            I+   +   NE+     + + ++  +   D  V       +   D           P   
Sbjct: 775  IVTASALDDNERDIEPCSNFLLMKRNASTDSIVAWHDPAEAAAADTSDGPSEVQQSPIGM 834

Query: 723  PLEREET------------------------------------------IKQLMDEQKIP 740
              +  +T                                          I++    Q   
Sbjct: 835  FPKPTKTVDLLTGADLVRKAIAQQSAGDPIAFNQDNDLFQLWEKDVTALIEEYQRLQSDI 894

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
             ++    +    +   L  +      +         N+   RG   H  L+  F  P   
Sbjct: 895  VEVELSPELTATDIVALKQNPEQFARRQRRPVPFKPNRYAKRGTEFHSWLEQRFGAPT-- 952

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSI----TRLLENPMMTTAMSCDSYSEVSVSGKIN 856
                          L    E   +   I     + L++  +    +    + + V     
Sbjct: 953  --------------LLDESELPGMDEEITPGQLQELKDKFVAGQFAD--RTPMFVEQPFE 996

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI-AQLSIYEKILKDSY 915
                 I+I GR+D +   +    I ++KT     +        ++  QL++Y        
Sbjct: 997  VSIDGIVIRGRMDAVFRDESGWHIVDWKTGQLPSRADM----RYLMMQLAVYRIAWAQLQ 1052

Query: 916  PNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAE 946
                  +     YV   K+         +  AE
Sbjct: 1053 GIDPDEIHASFYYVRYDKLSSADNLPSEREIAE 1085


>gi|56415773|ref|YP_152848.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56130030|gb|AAV79536.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 674

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 103/670 (15%), Positives = 214/670 (31%), Gaps = 121/670 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L  +++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTLVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 664

Query: 720 ENTPLEREET 729
                +R ++
Sbjct: 665 AMMAAKRAKS 674


>gi|331644512|ref|ZP_08345632.1| ATP-dependent DNA helicase Rep [Escherichia coli H736]
 gi|331036184|gb|EGI08419.1| ATP-dependent DNA helicase Rep [Escherichia coli H736]
          Length = 690

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 128 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 185

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 186 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 242

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 243 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 284

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 285 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 321

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 322 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 360

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 361 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 416

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 417 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 476

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 477 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 536

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 537 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 596

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 597 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 621

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 622 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 668


>gi|313837609|gb|EFS75323.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL037PA2]
 gi|314927510|gb|EFS91341.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL044PA1]
 gi|314972548|gb|EFT16645.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
           acnes HL037PA3]
          Length = 1035

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 124/867 (14%), Positives = 256/867 (29%), Gaps = 138/867 (15%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ +     +  +   +  F+DLI +  D L+  D        +      +++DE QDT 
Sbjct: 162 AQSVRKDVRKRSRLRALHTFDDLISDLVDALRDSDRGPLACATLANRFRLVMVDEFQDTD 221

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +QWE ++                  L+ +GD KQSIY+F GA+        +       
Sbjct: 222 PLQWETLQR----------AFHGHSNLWLIGDPKQSIYAFRGADVHAYQDAAQ------- 264

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS--TTTIRHRSSRIGQVGT 307
                  ++ L +++R+   I+  ++ +F   +   G+   S        R +     G 
Sbjct: 265 ---SASYVLHLDVNYRTDKTIVEAINTLFGSAQLGHGIPMGSVTARHQESRIATAATNGP 321

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--SN 365
              W Q       Q        T+  D L  E         +   +  M+   T+    +
Sbjct: 322 HYSWSQPFQIRCIQAPANVRLDTTASDRLVTED--------LVNQVIMMLEGGTVVTDDD 373

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
           G+ R ++  DI +LVR+R+             +      V +    +    A  DL+ L 
Sbjct: 374 GEVRPLRPNDIAILVRRRRRGA----ELAAALSQAHQPAVFSGALSVWSSQAADDLVTLL 429

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
             + +  D+     +  S L   +  D+    ++      +              +  + 
Sbjct: 430 EALDN-TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTIE 488

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             +H            D  T ++    G +             +        +    + +
Sbjct: 489 AALHR----------PDVLTRLVSMTGGERYVTDLRQVAQKAHI-----AACKGMLTATA 533

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +   +  + +Q      R   ++   V IMT+H AKGL  PVV L D  S     K I  
Sbjct: 534 TAAWIREQQQQAGDDDPRRLDSDQQAVTIMTIHEAKGLGFPVVLLPDIASAWAPKKSISG 593

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             +             +    S+    +  ++  ++  + E  RLLYV +TRA   + + 
Sbjct: 594 PVVWHDGQR------RVLDISSQGADRAIAVESHEEDERGENLRLLYVALTRARSAVRLW 647

Query: 666 K------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
                  HS ++ ++          +              L +                P
Sbjct: 648 WSPCPQRHSWSAFQRLVEMDRATGKLGLGNAGTVPGTFPWLNSGPIATAIAPANQRCLTP 707

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
             T   R   + + +        + +       + +   P+  +T     ++    D+  
Sbjct: 708 TATTQSRARVVPRTLTRPVDTAFVRTSYSGLTADLHAAVPTLANTLIDEPVDDKSVDDTA 767

Query: 780 ---------FNRGLIIHKLLQVIFTLPEHKRKN--FITSYCTKNAKLWPAKEYKNLLLSI 828
                     + G ++H +L+ I T           IT    + +   P     +L   +
Sbjct: 768 PGLCGLPGGTSFGSLVHAVLEYIDTSATDLSAEVLAITRRTLRTSP-LPDVPPADLAAGL 826

Query: 829 TRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKKD------------------- 861
            ++L + +        +      D  +E++    ++                        
Sbjct: 827 EQVLHSDLGSLAPGMTLADFSPADRLAEMNFELAMSQSGGSATMADLASPLCDPSLVPPD 886

Query: 862 ---------------------IIISGRIDQISIS-QQNIFIFEYKTHHHVPQE------- 892
                                  ++G ID +         + +YKT+             
Sbjct: 887 DPISGYGKMLVHIPNGNQALHGFLTGSIDAVLRRPDGRYLVVDYKTNRIPGVSKLTPRMY 946

Query: 893 ------IEHIPYTHIAQLSIYEKILKD 913
                        +  Q  +Y   L  
Sbjct: 947 DAHTMRAMMFSSHYPLQGLLYSAALHR 973


>gi|307731432|ref|YP_003908656.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
 gi|307585967|gb|ADN59365.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
          Length = 699

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 102/626 (16%), Positives = 196/626 (31%), Gaps = 137/626 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AAIVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRERWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S                  
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWS------------------ 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 316 -----------------EHGMGDSITVTACNDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  +L R      +   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 350 RANFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDICAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           +  DD +F+  + +P        +  + +   +   +++E +       + +   I   +
Sbjct: 406 NANDDPAFIRAITTPRRGVGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSPRQIEPMR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLR 538
               ++  L   A+  +       ++ A          F           + EF+ +  R
Sbjct: 466 VFCDFMQRLTERAEKDAAGTLLDELMDAIHYEAYLYDAFDERQAQAKWQNVLEFIEWLKR 525

Query: 539 --------------------NEQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVR 573
                                +          +L  LI  +        R    + + VR
Sbjct: 526 KGTKAEPEDATGGGNGEATGYDTADGLADTGKNLLGLIQTVALMSMLEGR--EEDPDAVR 583

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           + TVH +KGLE P VFLV     +  H+       +                        
Sbjct: 584 LSTVHASKGLEYPHVFLVGVEEGIMPHRGGADDEPIDD---------------------- 621

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +  EE  RL+YV +TRA   L +         +++        + +   +D 
Sbjct: 622 --------ARIEEERRLMYVAITRAQRSLHLNWCKKRKRARETVVCEPSRFIPEMLLDDA 673

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHP 719
                +      KD   + +     P
Sbjct: 674 PPPTAEEAPMSPKDRLASLKALLQKP 699


>gi|224457272|ref|ZP_03665745.1| ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 617

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 101/617 (16%), Positives = 191/617 (30%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 84  QAKISFWKSALLTPDQVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 143

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 144 ---SNIQKLWTDKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 190

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 191 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 242

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 243 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 267

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 268 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHK----IP 314

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        + K+     + 
Sbjct: 315 YTISGGSSFFSKAEIKDIISYLRLIVNTDDDRAFLRVINTPKREVGSATVHKLGEYASQH 374

Query: 464 ETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +        +  +            I           S  +        +     
Sbjct: 375 HCSFFHTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFIDNISY 434

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 435 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLSTVLNKMLLIDILDRDN 494

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 495 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 533

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 534 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 579

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 580 IDELPETDLYWVGTEKE 596


>gi|254246736|ref|ZP_04940057.1| UvrD/REP helicase [Burkholderia cenocepacia PC184]
 gi|124871512|gb|EAY63228.1| UvrD/REP helicase [Burkholderia cenocepacia PC184]
          Length = 775

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 102/577 (17%), Positives = 186/577 (32%), Gaps = 128/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 255 AALVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 311

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 312 ACQYELLKQLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 358

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S                  
Sbjct: 359 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWS------------------ 395

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 396 -----------------EHGMGDSITVTACNDEEHEAESVVFR---------LSAHKFER 429

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 430 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 485

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 486 NADDDPAFIRAVTTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 545

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 546 MFCDFIQRLTERADKEPATVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 605

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E   + +   L          ++             + + VR+ TVH 
Sbjct: 606 KGTKPETEAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKDEDPDAVRLSTVHA 665

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+             +   PI                   
Sbjct: 666 SKGLEYPHVFLVGVEEGIMPHR----------GGSEDDGPI------------------- 696

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 697 DNERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 733


>gi|206558483|ref|YP_002229243.1| ATP-dependent DNA helicase Rep [Burkholderia cenocepacia J2315]
 gi|198034520|emb|CAR50385.1| ATP-dependent DNA helicase Rep [Burkholderia cenocepacia J2315]
          Length = 695

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 102/577 (17%), Positives = 186/577 (32%), Gaps = 128/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKQLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S                  
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWS------------------ 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + +   +R
Sbjct: 316 -----------------EHGMGDSITVTACNDEEHEAESVVFR---------LSAYKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 466 MFCDFIQRLTERADKEPATVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E + + +   L          ++             + + VR+ TVH 
Sbjct: 526 KGTKPETEAVDGEADGFHNADGLADTGKNLLGLIQTVALMSMLEGKDEDPDAVRLSTVHA 585

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+             +   PI                   
Sbjct: 586 SKGLEYPHVFLVGVEEGIMPHR----------GGSEDDGPI------------------- 616

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 617 DNERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|21673895|ref|NP_661960.1| exodeoxyribonuclease V, beta subunit [Chlorobium tepidum TLS]
 gi|21647033|gb|AAM72302.1| exodeoxyribonuclease V, beta subunit [Chlorobium tepidum TLS]
          Length = 1199

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 129/1066 (12%), Positives = 281/1066 (26%), Gaps = 207/1066 (19%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK---KAQTLQQASQT 59
             R       +++ + +         ++ +    SLS         K     Q L +  + 
Sbjct: 211  ARIEDEAQAAFDEVCRIWQEEQDVILTILRSDKSLSRSEKFYRDDKVEPLLQALDEFVED 270

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                  F        +      K   T   +      ++    + +  + ++        
Sbjct: 271  CNPFALFDGFEKLTTSGIAAGIKKNGTAPAHPFFEACEQLQSAADERLLALKSE------ 324

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                     L  +      E KK+  V  F+DL+ +    L     +  +   +      
Sbjct: 325  ---------LVAFYRKRLPERKKEGNVRFFDDLLTDLYHALADGPEADALARALRNRYKA 375

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
             LIDE QDT  +Q+++ R +  +             LF +GD KQ+IYSF GA+     +
Sbjct: 376  ALIDEFQDTDPVQYDIFRRIYANSDAP---------LFLIGDPKQAIYSFRGADIFAYFQ 426

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +             L  ++RST  +L   +++F             +  +    
Sbjct: 427  AASDVGEE--------RRFTLNTNWRSTPKLLDGFNRLFDHARQPFVFDGIPSPPLVAG- 477

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     +L  +                     SL    +    A+  A  ++  I  
Sbjct: 478  ---------RLIPESELTGKPPLELCLLDGGEGDGSLKSGDATQFAAKACASMVAETISG 528

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             T           A  I V+VR  +   L+    R       I  V      +   +  +
Sbjct: 529  GT----------DASGIAVIVRTHQQARLMQATLR----KAGIVSVMRSDESVFASIEAE 574

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            ++  L   +     +      L +P+F  +  DI ++ +                N  + 
Sbjct: 575  EVRILVTALADPGRETLVRAALVTPIFGLNGSDIARLNSD--------------ENALVE 620

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL---NFT 536
            + Q    Y              +        +  R++ ++  G+     L   L      
Sbjct: 621  RLQEFRDYHRLWRERGFMVMARELMRR----EGVRERLLATAGSSGERALTNVLHCFELL 676

Query: 537  LRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             R E      ++ L +               +    ++   V+I+T H +KGL+ PVVF 
Sbjct: 677  HREEHARGLGMEGLAAWFGERVATRDSGEEYQIRLESDEPAVKIVTAHVSKGLQYPVVFC 736

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                   F   + K    +   +               +  ++       + T  E  RL
Sbjct: 737  PF----QFVSGNDKDEVALCHDDAG------RMVRDFGSASLNRHRTLAARETLAENLRL 786

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQR------------------------------- 679
             YV +TRA  + I          K                                    
Sbjct: 787  FYVALTRAERRCIFFTARIVDGRKSGKPPQLTPASYLLYASDDARRSANPVAEAADELQT 846

Query: 680  ----TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                   D +       +   +++  +  +          +       L + + I     
Sbjct: 847  IGVDDMADKLQKMAEESDGAMQVRRLSLGDDFHVRVPPAGSTERPELVLRQFKKILDTDW 906

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKLLQ 791
                   L    +     P     +  +      L        +  +    G+++H + +
Sbjct: 907  RIASFTTLSRHKQVAFELPDRDESAPAEPAASILLPEAERSIFAFPKGAGAGILMHSIFE 966

Query: 792  VIFTLPE--HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------------- 836
             +               +   +    +  +    L      +L  P+             
Sbjct: 967  TLDFASASCADIDEACAAALDRYG--FDKEWQPALASMTREVLATPLSSPNGSFTLGGLK 1024

Query: 837  -------------MTTAMSCDSYSEVSV--------------SGKINCPKKDIIISGRID 869
                         +    + +  +EV V                 ++      ++ G +D
Sbjct: 1025 PRTWFTELEFFFPLKRITAPE-LAEVLVRHGVIPTDTDPAAALQALDFAPVKGMLMGFMD 1083

Query: 870  QISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSY----P 916
             +  +Q   ++ ++K++H      E+             +  Q  +Y   L        P
Sbjct: 1084 MVFETQGRYYLLDWKSNHLGNSVEEYRREQLDRAMTENLYRLQYLLYTVALDRFLSLRVP 1143

Query: 917  NKSLVCLL-----IYVSE---------PKVFIIPQNKLNKAFAEIS 948
            +            +++                +P  +L +  +E+ 
Sbjct: 1144 DYRYETHFGGAIYVFLRGVSAERGEAFGFYRDLPSAELIRELSELL 1189


>gi|51245196|ref|YP_065080.1| exodeoxyribonuclease V, beta chain [Desulfotalea psychrophila LSv54]
 gi|50876233|emb|CAG36073.1| related to exodeoxyribonuclease V, beta chain [Desulfotalea
            psychrophila LSv54]
          Length = 1191

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 128/974 (13%), Positives = 275/974 (28%), Gaps = 134/974 (13%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT--------QCIEERFSLLSSFF 73
                    ++   ++   E    +     + L +A                 F     FF
Sbjct: 213  EDISLLWQNLEGAIARMKEWWLGSGTALQEALAEACGEDKFKKAFVADFAGSFRACEKFF 272

Query: 74   LTQKFTPQKNII------------TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            L Q      N+               +   K  D  +    S              K   
Sbjct: 273  LGQAEKFPANLSWLTVAGLKVEINGNKFRGKKKDEIDPFLNSMGLPEMAATELLELKKQL 332

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                 +  A  L        +++  + F+ LI      L   +    ++  +    +  L
Sbjct: 333  FIGYRIFFAGELERGVGRQLQEHGSISFDQLISRLAAGLCGEE--THLQTALQARYDLAL 390

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   QW +   L           S   +L+ +GD KQ+IY F GA+        
Sbjct: 391  IDEFQDTDNEQWHIFSKLFA---------SKKHSLYLIGDPKQAIYKFRGADIY------ 435

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                   T   +      L  ++RS  D++  V+ +F+  ++     E+       +S +
Sbjct: 436  ----SYFTARTKTDYFYSLDTNYRSHRDLVRGVNGLFAGSDDPFLFKEEGLLYYPVKSGK 491

Query: 302  IGQVGTVQ-----LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI-----AY 351
               V  V      L   V  Q +   + ++  W+S                 +       
Sbjct: 492  SRDVYLVDAEKKPLVPFVYLQLEENDDDKKGKWSSALARTAIRGDIVAETLHLLSISEPT 551

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +I  +            + ++ +DI VLVR            +       +  +   R  
Sbjct: 552  SIHKLNRDGQSI----YQPLRPQDIAVLVRSNSQA----EAYQQAFLQVGVPAIIAGRKT 603

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + +     +L+ L + I+  +D       +   LF  + DDI  I          Y    
Sbjct: 604  IFETDESHELLLLLQAIIDHDDLRLLKTAMTISLFACTGDDIMAIWQDEQAVAEWYNVFL 663

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            +  +    +          L  +       + F  ++   +  ++  +         L E
Sbjct: 664  QCYHLWSER--------GVLTMLYFLVDSKELFANLVQFSQPERRIAN------FTHLFE 709

Query: 532  FLNFTLRNEQNSYS-SLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             L             SL  L S L   Q     +    ++   ++I+T+H++KGL+ PVV
Sbjct: 710  VLQQAETAANLGPRQSLLWLRSALTGKQKNDAFELRLESDEEALQIVTMHSSKGLQYPVV 769

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            F  D   +    K+ K +                      +   S+  +   +    E  
Sbjct: 770  FCPDLYGRSARIKNEKNVISCHDGGAVIDF---------GSEHFSERRERACREELAEDL 820

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEK--KSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            RL YV +TRA  +        ++      ++  +    +  +  + +  ++ +    + +
Sbjct: 821  RLAYVALTRAELRSYTYWADISARGAGVDASLNSALGHLLFAGDDIDYEEQQERLKVLAR 880

Query: 707  DEWIAYEWSTHHP--------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            +    ++  +  P        E           +        +         + +   + 
Sbjct: 881  ESGALFQHVSAEPATCSSYGAERRVKSLATRPHRPRLLATDWQMTSYSALASLGDHAPVV 940

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN------FITSYCTKN 812
                D        +     +    G  +H LL+           +       +   C + 
Sbjct: 941  QFDRDALADAPRIAFAELPKGARFGNAVHDLLEKCAFADLVLHADDLHVQGMMEQKCEEY 1000

Query: 813  AKLWPAKEYKNLLLSITR---LLENPMMTTAMSCDSYSEVSVSGKI-------------- 855
                  + +  L +             +          E+    ++              
Sbjct: 1001 GLQLDQELFTQLFVQACSTPLFAGGFSLADLSRSRCLKEMEFYLRLAHINLAEINTILAD 1060

Query: 856  -------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYT 899
                   +  K    ++G ID +   +   ++ +YK+++    + +            + 
Sbjct: 1061 EPTVQAISAKKMRGYMTGFIDLVCQHEGKYYVVDYKSNYLGELQSDYSGDSLVQVMAAHN 1120

Query: 900  HIAQLSIYEKILKD 913
            +  Q  IY  +L  
Sbjct: 1121 YGLQYYIYSLVLHQ 1134


>gi|50365383|ref|YP_053808.1| repair endonuclease ATP-dependent DNA helicase [Mesoplasma florum
           L1]
 gi|50363939|gb|AAT75924.1| repair endonuclease ATP-dependent DNA helicase [Mesoplasma florum
           L1]
          Length = 723

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 112/702 (15%), Positives = 223/702 (31%), Gaps = 138/702 (19%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           L+   G    ++  +  K  + +   +++                +  +   +    ++ 
Sbjct: 23  LRIVAGAGSGKTKVITTKIAYLIEELKMAPYKILAVTFTNKAAREMRDRVTKIIPDLKSN 82

Query: 61  CIEERFSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIR---DRF 114
                F    S  L + F      KN +  +   +   L+  + +      +++   ++ 
Sbjct: 83  PHISTFHAWCSRVLREDFELVGLNKNFLIIDQGDQIAILRSLINEHFSHLPELKKYTEKK 142

Query: 115 NTYKM----------FKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
             Y++           ++T             L   YE+  K    +DF DL +    L 
Sbjct: 143 IIYRIGNWKNDLTSPLEATEECYSGIERAIATLYQKYEDYLKTINSIDFNDLQVLVFKLF 202

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +   +     K     +++++DE QDT+ +Q+++I+ LT D             L  VG
Sbjct: 203 NEHPEA---LEKWRNRYDYVMVDEFQDTNDLQFDLIKFLTRD----------KNNLTVVG 249

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  Q+IYS+ GA+   +L   +               I L  ++RST  IL + +   + 
Sbjct: 250 DPDQTIYSWRGAKVDIILNFTKSFSN--------GVSITLNQNYRSTQKILDLANDFINN 301

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +N +     +                                            + +  
Sbjct: 302 NKNREAKDIFTNNATGDLPI-----------------------------------IKECE 326

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           S +  AR +   I  +I              + KDI VL R    +       +    + 
Sbjct: 327 SRNDEARYVTLKIKELIKDG----------YEYKDIFVLYRLNAWSQEFEKEFQ----NN 372

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-Q 459
           KI           D   IK+  A  R + + +D+ +   +LKS +    +  I K+    
Sbjct: 373 KIPFQLIGGIRFKDRKVIKEANAFLRTLAT-QDEQAVERVLKS-IPKVGDVTIKKLKEKA 430

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF-----CSPHDFFTLILGAKKGR 514
                ++Y+ I       I++    +  I  ++  +        +       +L      
Sbjct: 431 NDMNVSLYDLIVNEDELHINQVSKHLTTIRNVLSNSVNVYNESKNIRMTLQYMLVESGYI 490

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKRAHSAN 568
           Q+       E +  +D   +           E+ +  S  +++S L++       A    
Sbjct: 491 QKLKDTEKKEDLSYIDSLYDQLENFDKSYQTEELNEGSTDKIVSYLQEEALLNSDADDIE 550

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             +V ++TVH AKGLE+ +VF+V     VF  +                           
Sbjct: 551 AQKVTLLTVHAAKGLENKIVFVVGLNQDVFPGRLSSNS---------------------- 588

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                           EE  R LYV +TRA +++ I      
Sbjct: 589 ------------AREIEEERRTLYVAITRAEEKVYITYIKGE 618


>gi|86139558|ref|ZP_01058126.1| hypothetical protein MED193_00380 [Roseobacter sp. MED193]
 gi|85823741|gb|EAQ43948.1| hypothetical protein MED193_00380 [Roseobacter sp. MED193]
          Length = 1050

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 137/955 (14%), Positives = 279/955 (29%), Gaps = 130/955 (13%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
                 +L  +   +       P    + +         T     +   Q L++A+Q + +
Sbjct: 190  AALSAALRRTVVALLDMF---PESLGTILE-----CNATAKKAFISDHQNLRKAAQNETL 241

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            E  ++L            +K++      +   +L E +  S DE   +R           
Sbjct: 242  ETDWALWQKLR-----GLRKSMRGSPTPEGYDELAEAVTVSADEL--LRHPRPLADACAK 294

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
              A +  A+ +   Y+ AK+K  ++D+ D+I+ T  LL+ +     I   +  EI+ ++I
Sbjct: 295  VNALVIGAQEVLEAYQAAKRKAGLIDYADMIVETETLLRTQPD---ILAAVLGEIDCVVI 351

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT+ +Q+ ++  L +            +    VGD KQSI  F GA+ +     + 
Sbjct: 352  DEFQDTNPVQFALLWQLAQ----------GAKRALIVGDTKQSIMGFQGADARLSQALQD 401

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                         ++  L  ++RS   I+  V+ +        G              R 
Sbjct: 402  F---------HASAVTPLDRNWRSDPRIMGFVNAL--------GPVLFPQGYNALTPVR- 443

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                            +    P  E                  A  +A  I+ ++  +T 
Sbjct: 444  ----------------EETGEPALEVINLPGGRSDST------AGCVADRIARILAGNTH 481

Query: 363  FSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              +      R  +A DI VL         +          +   V       L   LA++
Sbjct: 482  VFDKVTKAMRPAKASDIAVLCYTGSKCEAVAAAIEA----HGHPVRLQQSGWLG-SLAMR 536

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
               A   +I    D L+ +  L           +      R+  + V +           
Sbjct: 537  VARAALAYIADPSDRLAALTWLT-----LGPPRMPIEDALRNAVDRVLDTHTALVP---- 587

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLR 538
                    +  L    Q     D    +L +   R+      G  + +  L         
Sbjct: 588  --------LAALHEAEQQRPVVDTVAEMLRSTNLREWAAGIDGPAQALADLARLEAEAQT 639

Query: 539  NEQNSYS----------SLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLE 584
             +  +             +Q  +  +                 + + + I T H+AKG E
Sbjct: 640  FDSLATDLRSAAGFHGYGMQIFLGWINAQTDKAWDKHPDPDGWSSSGIEISTWHSAKGRE 699

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP---GIPIWIPQSKSRNNIVSDLIKHLKK 641
             P+  +                      +         +            +   +  ++
Sbjct: 700  WPITIIAGLDRAFAERPGTLSAEFDGFKDLGNVLSHANLGYLPKFDAPETQAVFAEAHQE 759

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              ++E  R LYV +TRA D+LI+      +  + S      D++ D          +++ 
Sbjct: 760  QDEQEAARELYVALTRARDRLILALPREKTKARDS-AERMVDLLRDRGGLQSGAGFLEVC 818

Query: 702  NSINKDEWIAYEWSTHHPENTPLE---REETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                              E T            +   +        SP   +        
Sbjct: 819  GEQFVANVTDGASDVPEVEPTSASLGYPRFGTSRQNVDAPHTPWRQSPSTQEPIASQAPA 878

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
                   G     S        +RG I+H   +V+   P     N               
Sbjct: 879  VIDTVKLGAAIDTSDAVFASAADRGTILHLAFRVLTNQP-----NLSERLIAATG--LAP 931

Query: 819  KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI 878
            K    +     ++L N  +        + E+ V    +        +  ID ++      
Sbjct: 932  KVIDEIATQA-KILRN-RLAAEGYDQLHFELPVQ---DIRPDGSQTNAIIDCLAEGPDGF 986

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKV 932
             I ++K+      + E   + ++ QL  Y +++  +  +K +    + ++ E ++
Sbjct: 987  LILDHKSGPCP--DPEARFHAYLPQLKSYAQLMALTRRDKPVRGLAINWIDEGRL 1039


>gi|320531567|ref|ZP_08032515.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136218|gb|EFW28218.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 692

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 107/714 (14%), Positives = 197/714 (27%), Gaps = 165/714 (23%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P       S  +      +   +      A  L+         +  
Sbjct: 45  AAAEMRERVTALVGPAGERMWVSTFHSACVRILRREHE-----AAGLRSTFSIYDAADS- 98

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           + L +  + +     K    +    +  DLK +L          +               
Sbjct: 99  TRLITLIVRELGIDPKRFTPKTFAHRISDLKNEL------ITPAQFAERAVTSNPLECHL 152

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y E       LDF+D+I+ T  LL+ R     +     +   HIL+DE Q
Sbjct: 153 ----AEVYRAYAERLSAANALDFDDIIMRTVALLQTRPA---VAEMYRRRFRHILVDEYQ 205

Query: 187 DTSLIQWEVIRSLTEDF-FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           DT+  Q+ ++R L       G  +   P  L  VGD  QSIY+F GA  + +   +    
Sbjct: 206 DTNHAQYVLVRELVGGPGTSGAGSALPPGELTVVGDSDQSIYAFRGATIRNIEEFEEDYP 265

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I L  ++RST +IL+  + V S     +  +                 
Sbjct: 266 A--------ARTILLEQNYRSTQNILSAANAVISRNSGRREKN----------------- 300

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW        +  +    +            S    AR I+  +  +         
Sbjct: 301 ----LW-------TAAGDGAPITGYVA-------DSEHDEARWISQEVDRLADE------ 336

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                ++ +D+ V  R    +  +                        D   IKD +A  
Sbjct: 337 ---HGVRPRDVAVFYRTNAQSRALEEAF----MRAGQPYKVIGGTRFYDRREIKDAIAYL 389

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGIS----- 479
           R + + +DD++   +L  P     +     +         +  + +   A          
Sbjct: 390 RAVDNPDDDVNLRRILNVPKRGLGDKAEGALAEHAARYAVSFGQAVADAAGAPREDQANE 449

Query: 480 --------------------------------KFQHVIKYIHELIHIAQFCS-PHDFFTL 506
                                           + +   + +  L H+        D    
Sbjct: 450 PDGTEGADGQAPSSIGTSEPPEVEGLTTRARNQVRGFHELLTTLRHMVTAGDGVADVLDS 509

Query: 507 ILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYP---- 558
            L A     +  +    +    ++ L E  +     +  +    L + +  +        
Sbjct: 510 ALDASGYLAELRASDDPQDATRVENLAELHSVASDFQAANPDGTLADFLERVSLVADSDQ 569

Query: 559 -------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                         +    ++ +MTVHTAKGLE PVVF+       F H          +
Sbjct: 570 LPPSADLEDEDARQAEEQGQITLMTVHTAKGLEFPVVFVTGMEDGTFPHTRSLAEETELA 629

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                                 L YV +TRA ++L + 
Sbjct: 630 EERR----------------------------------LAYVALTRARERLYLT 649


>gi|116052318|ref|YP_792629.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587539|gb|ABJ13554.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1245

 Score =  247 bits (631), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 134/1055 (12%), Positives = 296/1055 (28%), Gaps = 140/1055 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-----QTQ 60
             LS  ES   + +      Y Q+  ++     +       +    + L+        + +
Sbjct: 219  ALSAPESLAALLEQ-GGDWYRQLDQLDAQARAAWRAARVELEALLRDLRPYLNGNSYRGK 277

Query: 61   CIEERFSLLSSFFLT-QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--KIRDRFNTY 117
              +E F           +   Q   + +    +     +++                   
Sbjct: 278  DSDETFDAWLQALADWSEGGEQPANLGKFGQTRIKLTAKRVAPEHAALRAIDAWAAHQEE 337

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +   +    L     +    E  K++   + F+DL+   +  L+       +   I ++ 
Sbjct: 338  RPDLAPHLLLHALGEVGRELEVEKQRRAEIGFDDLLSRLDRALQGPG-GERLAQLIREQF 396

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               LIDE QDT  +Q+ +   +           +    LF +GD KQ+IY+F GA+    
Sbjct: 397  PVALIDEFQDTDPVQYRIFERIYRIAADPGEPQARETGLFMIGDPKQAIYAFRGADIHTY 456

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            LR +            +     L  +FRSTA ++   ++ F+  E     +         
Sbjct: 457  LRAREA---------TRGRHYTLGKNFRSTAAMVAAANRCFAFAEEHPRGAFRFAREGLE 507

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                   V      E+++            +  +    L   +    +A R A  I   +
Sbjct: 508  NPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLDAEAGVLGSAAYRQEMAERSASAIRRWL 567

Query: 358  ------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                          G  R ++  DI +LVR R +      +   L      SV  +DR  
Sbjct: 568  SLADLGRAGFADEQGGWRALRPADIAILVRGRAEA---EAIRSALAARRLASVYLSDRDS 624

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D     DL+   R       D      L +   +     + ++           E   
Sbjct: 625  VFDSQEAADLLHWLRACADPGADALLRVALATRSLHLDWATLERLNQD--------ELFW 676

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            +        ++   +    L  + +  +  +    +L    G +   +         L E
Sbjct: 677  ERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLLRYADGERSLTNLL------HLAE 730

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            +L          ++ ++ L  +++           ++ + ++++T+H +KGLE P+V L 
Sbjct: 731  WLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHKSKGLEYPLVLLP 790

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               S      +               +     +        +   +        E  RLL
Sbjct: 791  FICSWRELDGNSGAPVSFHEDGAAGRVIELARRK----EQAARAYEQANDERLGEDMRLL 846

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-----------------VYDSFHNDER 694
            YV +TRA   + +      ++  KS +     +                    +   + R
Sbjct: 847  YVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCLAALRGECR 906

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               ++     + + ++A                     +     +  +  + + +D    
Sbjct: 907  EIVVEPAPEADAERYVAGRGRGLGQARETRRSSREKWWVASYSGLQLQASAGLDDDEALE 966

Query: 755  YILNPSTIDTKGKTNLESLLS------------------DNQTFNRGLIIHKLLQV---- 792
               +   I  +  T  E   S                    +    G  +H LL+     
Sbjct: 967  SDESQEPISAEEATFHEEGRSAEQPPVAHASEMRDDLHRFPRGPAPGTFLHGLLEWAGRE 1026

Query: 793  ---IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLENPMMT---------- 838
               +      +R+  +   C        A+     L       L  P             
Sbjct: 1027 GFDVARADAQRRRELVARRCDLRGWKDWAEPLDLWLEQYLAEPLRWPGGETSLAGLVAYQ 1086

Query: 839  -----TAMSCDSYSEV------------SVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
                    +    +E             +    +     + +  G +D +   Q   ++ 
Sbjct: 1087 VEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNGMFKGFVDLVFEHQGRFYVA 1146

Query: 882  EYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDS---------YPNKSLVCL 923
            +YK++     +  + P           +  Q  +Y   L            Y       +
Sbjct: 1147 DYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALHRQLKARLPDYDYDRHMGGAV 1206

Query: 924  LIYVSEPKV------FIIPQNKLNKAFAEISTKIP 952
             +++   +       F  P  +L +    + +  P
Sbjct: 1207 YLFLRGARAATQGLHFERPPRELIERLDALFSGQP 1241


>gi|300900679|ref|ZP_07118832.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 198-1]
 gi|300355828|gb|EFJ71698.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 198-1]
          Length = 673

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNPSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGAELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 IWEQERKVVSAEE 651


>gi|107024447|ref|YP_622774.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054]
 gi|116688174|ref|YP_833797.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424]
 gi|105894636|gb|ABF77801.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054]
 gi|116646263|gb|ABK06904.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424]
          Length = 695

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 102/577 (17%), Positives = 186/577 (32%), Gaps = 128/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKQLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S                  
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWS------------------ 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 316 -----------------EHGMGDSITVTACNDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RAQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--- 535
               +I  L   A          D    I         F  R        + EFL +   
Sbjct: 466 MFCDFIQRLTERADKEPATVVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E   + +   L          ++             + + VR+ TVH 
Sbjct: 526 KGTKPERDAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKDEDPDAVRLSTVHA 585

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     +  H+             +   PI                   
Sbjct: 586 SKGLEYPHVFLVGVEEGIMPHR----------GGSEDDGPI------------------- 616

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 617 DNERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|189424132|ref|YP_001951309.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189420391|gb|ACD94789.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 1048

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 134/974 (13%), Positives = 280/974 (28%), Gaps = 179/974 (18%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETG-----NPTILKKAQTLQQASQT 59
           FGL    +   + +  +      +        L+  TG     +  +L   + +++   +
Sbjct: 110 FGLRSLTTISELEQ--FRFVREIIDAFPHEHPLTRSTGDIHFESDRLLALYEIMKKEDWS 167

Query: 60  QCI-EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                 R    ++          K                  +K ++E  K+        
Sbjct: 168 ADWLAARVDAYAATLPDNPDFLYKRQTRASDGTVYKKGDLNERKLREELRKLEQ------ 221

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                   L  A      Y++  K+    DF D+I+  +   K+    A +     +   
Sbjct: 222 --------LKAAARSFDDYQQLLKERGRYDFADMILWCSAAFKQN---ADLLATYQERYL 270

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           ++L+DE QDTS  Q+E++  L + +            LF VGD+ QSI+ F GA  + + 
Sbjct: 271 YLLVDEFQDTSGSQFELLMQLADYWDA--------PNLFVVGDDDQSIFRFQGASVENIR 322

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
           R     +          + + L  + RS+  IL     +    +      +         
Sbjct: 323 RFVERYR-------PSLTTVTLTDNHRSSQLILDGAGALIGRNQERLSDEKQLIAMNPEV 375

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           ++                                   L   ++ +     IA  I  ++ 
Sbjct: 376 AALPEPP-----------------------------QLEGYATLAHETVAIANRIGALLD 406

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                       +  + I V+ R    +     + R+L     ++V    R  +     I
Sbjct: 407 AG----------VLPEQIAVIYRNHSQS---EEIIRYLTAR-GVAVQTRRRADILQEPLI 452

Query: 419 KDLMALGRFILSQEDDLSF-----VCMLKSPLFNFSEDDIFKI-----CTQRHETETVYE 468
             LM + R++ ++ +           +L  P F      + ++       +  +  + + 
Sbjct: 453 LKLMNVLRYLATELERPHSGERLLFEILHEPWFGVPPLALARLSVEIARQRTEKRPSYWR 512

Query: 469 YIQKFANCGISK-----------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-QQ 516
                      +            +   + I EL+  A   +  +    ++       Q 
Sbjct: 513 EQLPLRGMDKGQQALFPASDDLHLRQAGETIEELLRDAATMTLQELLHHVITRLGILAQA 572

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN----HNEV 572
             +      +++L+   +F          SL EL++ L                     V
Sbjct: 573 LSAHERVWHLELLNTLFDFVREETAKQPLSLPELLAMLADMQRQGISLAVEKLSYTGAGV 632

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
             +T H +KGL+   VF++     V+      + + MP                      
Sbjct: 633 NFLTAHGSKGLQFDHVFMLGCTRGVWDSASRNRTYSMP---------------------- 670

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
             +      S +EE  RL YV MTRA  QL+I      + EK+  +  +   + +S    
Sbjct: 671 PTIWSGPAGSEEEESRRLFYVAMTRARKQLVISWPERDNKEKELEKSRFVAELAESGGGS 730

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            R   +     +     +        P     +                 L       + 
Sbjct: 731 IRQHVLSDDELLAFGNAVLQALPARLPAELIDD------------AFVDSLLQKYSLSVT 778

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---------- 802
                    +     T L      +     G  +H  L+ +F   +              
Sbjct: 779 HLNSYLRCPLSFYFNTLLRVPAPMSSALTFGSAVHHALEQLFRKMKADPAGRFPTADVFV 838

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI-NCPKKD 861
                +  ++ + +   E++  L     +L  P    A       +  V     N     
Sbjct: 839 EDFRWFMRRHEEGFTPAEFRRRLEYGETIL--PGFYAAHHAGWKRDALVEYPFRNILMDG 896

Query: 862 IIISGRIDQISISQQNIFIFEYKTH-------HHVPQEIEHIPYT--------------- 899
           I ++G++D +  S  ++ + +YKT           P + E +                  
Sbjct: 897 IPLNGKLDMLEFSGNHVTVVDYKTGNPQNARKKLNPPDPEKVAKALAEGREPHDDDRLGG 956

Query: 900 -HIAQLSIYEKILK 912
            +  Q   Y  +++
Sbjct: 957 DYWRQAVFYRILVE 970


>gi|329960510|ref|ZP_08298898.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
 gi|328532740|gb|EGF59527.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057]
          Length = 1156

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 130/841 (15%), Positives = 276/841 (32%), Gaps = 90/841 (10%)

Query: 100  LKKSQDEFIKIRDRF-NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L +  +     + R  N+ ++    L  L L  +++       +++       L+ +TN 
Sbjct: 389  LLQDAERLRPQKSRIINSCRLSLQHLNKLQLLNHIDEEVRTLNREHNRF----LLSDTNA 444

Query: 159  LLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            LL    +   S+++  KI   I +++IDE QDTS +QW+  R L  +             
Sbjct: 445  LLHQLVREGDSSFVFEKIGANIRNVMIDEFQDTSRMQWDNFRLLLLEGLS------QGAD 498

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQ----KRATNAGQKFSIIELPLSFRSTADIL 271
               VGD KQSIY +   +   +      ++    +          I  L  + RS  +I+
Sbjct: 499  SLIVGDVKQSIYRWRNGDWGILNGLGEKDEGSEVRDKGLGSFPIRIETLKTNRRSETNII 558

Query: 272  TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               + +F+   +                 +      V        Q   + + +     S
Sbjct: 559  RFNNGLFTAAVDYLNTLHLEELKEDCYPLKRAYADVV--------QESPKSDERGYVKAS 610

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
            + +   + +        +   + N++ T           ++  DI +LVRK K+ P I  
Sbjct: 611  FLEPDEEHNYTEQTLLSMGKEVQNLLATG----------VRLNDITILVRKNKNIPPIAD 660

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                      + VV ++ F L   LAI  L+   R++ + ED +S   ++ +        
Sbjct: 661  YFDKELR---LPVVSDEAFRLDASLAICMLIDALRYLSNPEDKISRASLIANYR------ 711

Query: 452  DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
             + +    + E +             + +       +  L         ++    +    
Sbjct: 712  -LTEGQKGKEEKKNWDSLFIGSPEEMLPE--TFTSRMDTLR----LMPLYELLEELFSIF 764

Query: 512  KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
                        +    L  F +      Q++ S     I   E+     K   S   + 
Sbjct: 765  G------MNRIEKQDAYLFSFFDAVTEYLQSNSSDPDSFIRYWEET-LCSKTIPSGETDG 817

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH--IMPSLNDDPGIPIWIPQSKSRN 629
            +RI+++H +KGLE   V +     ++ +  + + +      +  +   +      +    
Sbjct: 818  IRILSIHKSKGLEFHTVLIPFCDWKLENETNNQLVWCTAPEAPYNALKLIPVSYSATMAE 877

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
            ++      H +     +   LLYV  TRA   LI+               T  +++ ++ 
Sbjct: 878  SVYRQDYLHERLQLWVDNLNLLYVAFTRAGKNLILWSKKGQKG-------TISELLANTL 930

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
                              E  +   S+   ++   E  +  ++ +      + +F  I+ 
Sbjct: 931  PQIAGKGTGSWDEEAAVYESGSLCPSSPAVQDDRQETNKLAQKPVKLPVHMESMFHDIE- 989

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
                      S         ++   S  +  NRG ++H L   I T  E+  +N I+   
Sbjct: 990  -------FRQSNRSADFIAGIDEAESSQRFINRGRLLHTLFSAIAT--ENDIENAISQLV 1040

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID 869
             +        E + +     R    P +    S      +     I   +   + + R D
Sbjct: 1041 FEGIIGHTETE-EEIRELTERAFSLPQVKDWYSGTWQ--LFNECDIIWQENGELHTRRPD 1097

Query: 870  QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS-YPNKSLVCLLIYVS 928
            ++ +    I + ++K               +  Q+  Y ++L    YP +++   L YV 
Sbjct: 1098 RVMMRNGEIAVVDFKFGKSN--------KKYNKQVQGYMQLLARMGYPKENIKGYLWYVE 1149

Query: 929  E 929
            E
Sbjct: 1150 E 1150


>gi|284923883|emb|CBG36982.1| ATP-dependent DNA helicase [Escherichia coli 042]
          Length = 678

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 116 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 173

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 174 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 230

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 231 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 272

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 273 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 309

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 310 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 348

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 349 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 404

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 405 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 465 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 524

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 525 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 585 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 609

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 610 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 656


>gi|148377565|ref|YP_001256441.1| ATP-dependent helicase [Mycoplasma agalactiae PG2]
 gi|148291611|emb|CAL58997.1| ATP dependent helicase [Mycoplasma agalactiae PG2]
          Length = 734

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 111/596 (18%), Positives = 188/596 (31%), Gaps = 122/596 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y E  K    LDF+DL+I  N+L  K      I  K   + ++IL+DE QDTS IQ
Sbjct: 192 IYNFYNEQLKHLQSLDFDDLLIKVNELFYKNPE---IVKKWALKYSYILVDEFQDTSAIQ 248

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+I+ L+          S    L  VGD  Q+IY + GA+   +L  ++  +       
Sbjct: 249 YEIIKYLS----------SQKAQLTIVGDPDQTIYRWRGADVNLILSFEKDFEN------ 292

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL   + +     N    +                        
Sbjct: 293 --TKTIILNKNYRSTKKILAAANNLIKYNRNRFNKNLV---------------------- 328

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     +  +  +   F    +        R +   I+++              IQ
Sbjct: 329 ------TDNSDGDEIEYIHAFSPEAE-------VRWVVQKINDLKKQ----------KIQ 365

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K+I +  R    +          K    I+              IKD +A  R I    
Sbjct: 366 LKNIAIFYRSNSYSRNFEEQLMNEK----INYKIFGGEKFYQRKEIKDALAFLRVIYDGN 421

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           D L    ++  P     E  + KI      +  ++Y+ +           + +I  I  L
Sbjct: 422 D-LQLKRIINVPPRKIGEASLNKIISFANEKNLSLYKTLVNHYKELPVPKEVIINIIALL 480

Query: 492 -------IHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRNEQN 542
                    + Q    H      L      +             + +   L      E  
Sbjct: 481 NCVNKYKAALRQGNKIHVVLKSFLKEIGFLKYVNEDVGLKGTGEENIRALLEGIKSWEIT 540

Query: 543 SY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +    L+E    +     +   + + + + V +MTVH AKGLE   VFLV     +F + 
Sbjct: 541 NPNKGLKEYFEYISLISASD--SSNESMSYVSLMTVHAAKGLEFDNVFLVGMCENIFPN- 597

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                               +      EE  RL YV +TRA ++
Sbjct: 598 ---------------------------------YRAYKVAEAMEEERRLAYVAITRAKEK 624

Query: 662 LIICKHSN----TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           L +         +  EKK ++      +  + H  ++   I +   +  +E I   
Sbjct: 625 LFVSDSRGLLLYSQTEKKPSRFLKEMGIDINKHILQKDNSIFVDGELEDEEQIRKR 680


>gi|254239046|ref|ZP_04932369.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa C3719]
 gi|126170977|gb|EAZ56488.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa C3719]
          Length = 1245

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 134/1055 (12%), Positives = 295/1055 (27%), Gaps = 140/1055 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-----QTQ 60
             LS  ES   + +      Y Q+  ++     +       +    + L+        + +
Sbjct: 219  ALSAPESLTALLEQ-GGDWYRQLDQLDAQARAAWRATRVELEALLRDLRPYLNGNSYRGK 277

Query: 61   CIEERFSLLSSFFLT-QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--KIRDRFNTY 117
              +E F           +   Q   + +    +     +++                   
Sbjct: 278  DSDETFDAWLQALADWSEGGEQPANLGKFGQTRIKLTAKRVAPEHAALRAIDAWAAHQEE 337

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +   +    L     +    E  K++   + F+DL+   +  L+       +   I ++ 
Sbjct: 338  RPDLAPHLLLHALGEVGHELEIEKQRRAEIGFDDLLSRLDRALQGPG-GERLAQLIREQF 396

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               LIDE QDT  +Q+ +   +           +    LF +GD KQ+IY+F GA+    
Sbjct: 397  PVALIDEFQDTDPVQYRIFERIYRIAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTY 456

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            LR +            +     L  +FRSTA ++   ++ F+  E     +         
Sbjct: 457  LRAREA---------TRGRHYTLGKNFRSTAAMVAAANRCFAFAEEHPRGAFRFAREGLE 507

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                   V      E+++            +       L   +    +A R A  I   +
Sbjct: 508  NPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLDVEAGVLGSAAYRQEMAERSASAIRRWL 567

Query: 358  ------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                          G  R ++  DI +LVR R +      +   L      SV  +DR  
Sbjct: 568  SLADLGRAGFADEQGGWRALRPADIAILVRGRAEA---EAIRSALAARRLASVYLSDRDS 624

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D     DL+   R       D      L +   +     + ++           E   
Sbjct: 625  VFDSQEAADLLHWLRACADPGADALLRVALATRSLHLDWATLERLNQD--------ELFW 676

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            +        ++   +    L  + +  +  +    +L    G +   +         L E
Sbjct: 677  ERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLLRHADGERSLTNLL------HLAE 730

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            +L          ++ ++ L  +++           ++ + ++++T+H +KGLE P+V L 
Sbjct: 731  WLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHKSKGLEYPLVLLP 790

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               S      +               +     +        +   +        E  RLL
Sbjct: 791  FICSWRELDGNSGAPASFHEDGAAGRVIELARRK----EQAARAYEQANDERLGEDMRLL 846

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-----------------VYDSFHNDER 694
            YV +TRA   + +      ++  KS +     +                    +   + R
Sbjct: 847  YVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCLAALRGECR 906

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               ++     + + ++A                     +     +  +  + + +D    
Sbjct: 907  EIVVEPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQLQASAGLDDDEVLE 966

Query: 755  YILNPSTIDTKGKTNLESLLS------------------DNQTFNRGLIIHKLLQV---- 792
               +   I  +  T  E   S                    +    G  +H LL+     
Sbjct: 967  SDESQEPISAEEATFHEEGRSAEQPPVAHTSEMRDDLHRFPRGPAPGTFLHGLLEWAGRE 1026

Query: 793  ---IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLENPMMT---------- 838
               +      +R+  +   C        A+     L       L  P             
Sbjct: 1027 GFDVARADAQRRRELVARRCDLRGWKDWAEPLDLWLEQYLAEPLRWPGGETSLAGLVAYQ 1086

Query: 839  -----TAMSCDSYSEV------------SVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
                    +    +E             +    +     + +  G +D +   Q   ++ 
Sbjct: 1087 VEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNGMFKGFVDLVFEHQGRFYVA 1146

Query: 882  EYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDS---------YPNKSLVCL 923
            +YK++     +  + P           +  Q  +Y   L            Y       +
Sbjct: 1147 DYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALHRQLKARLPDYDYDRHMGGAV 1206

Query: 924  LIYVSEPKV------FIIPQNKLNKAFAEISTKIP 952
             +++   +       F  P  +L +    + +  P
Sbjct: 1207 YLFLRGARAATQGLHFERPPRELIERLDALFSGQP 1241


>gi|331679887|ref|ZP_08380550.1| ATP-dependent DNA helicase Rep [Escherichia coli H591]
 gi|331072434|gb|EGI43766.1| ATP-dependent DNA helicase Rep [Escherichia coli H591]
          Length = 690

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 114 AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 171

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 172 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 216

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 217 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 266

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 267 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 318

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 319 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 343

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 344 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 390

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 391 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 450

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 451 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 510

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 511 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 570

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 571 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 602

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 603 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 655

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 656 IWEQERKVVSAEE 668


>gi|254874977|ref|ZP_05247687.1| rep, ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254840976|gb|EET19412.1| rep, ATP-dependent DNA helicase [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 607

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 101/617 (16%), Positives = 190/617 (30%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 74  QAKISFWKSALLTPDQVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 133

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 134 ---SNIQKLWTDKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 180

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 181 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 232

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 233 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 257

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 258 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHK----IP 304

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        + K+     + 
Sbjct: 305 YTISGGSSFFSKAEIKDIISYLRLIVNTDDDRAFLRVINTPKREVGSATVHKLGEYASQH 364

Query: 464 ETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +          +             I           S  +        +     
Sbjct: 365 HCSFFHTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFIDNISY 424

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 425 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLSTVLNKMLLIDILDRDN 484

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 485 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 523

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 524 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 569

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 570 IDELPETDLYWVGTEKE 586


>gi|237727902|ref|ZP_04558383.1| ATP-dependent DNA helicase Rep [Citrobacter sp. 30_2]
 gi|226910351|gb|EEH96269.1| ATP-dependent DNA helicase Rep [Citrobacter sp. 30_2]
          Length = 673

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 101/647 (15%), Positives = 207/647 (31%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    +          K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKLILQQLISTISNWKNDLMTPAQAAASAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +    I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNEE---VRERWQNRIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------KRARFTVVGDDDQSIYSWRGARPQNLVLLSKDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +++L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVVKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLSNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQTLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    I       +   S    E  +  ++   ++        
Sbjct: 460 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNTLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E     +L ++++         +       ++V++MT+H +KGLE P VF+V        
Sbjct: 520 ELEEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVFMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +LI           +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELIFTLCKERRQYGELVRPEPSRFLLELPQDDVIWEQERKVVSAEE 651


>gi|62261380|gb|AAX77985.1| unknown protein [synthetic construct]
          Length = 706

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 101/617 (16%), Positives = 190/617 (30%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 164 QAKISFWKSALLTPDQVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRNH 223

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 224 ---SNIQKLWTDKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 270

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 271 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 322

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW         +                      
Sbjct: 323 IFDKK---------------------LWSNKDYGEQIKVISLIND--------------E 347

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 348 DEAQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHK----IP 394

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        + K+     + 
Sbjct: 395 YTISGGSSFFSKAEIKDIISYLRLIVNTDDDRAFLRVINTPKREVGSATVHKLGEYASQH 454

Query: 464 ETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKG 513
              + +          +             I           S  +        +     
Sbjct: 455 HCSFFHTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFIDNISY 514

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 515 RQWLIDSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLSTVLNKMLLIDILDRDN 574

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 575 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 613

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 614 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 659

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 660 IDELPETDLYWVGTEKE 676


>gi|330962479|gb|EGH62739.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            maculicola str. ES4326]
          Length = 1230

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 124/997 (12%), Positives = 274/997 (27%), Gaps = 139/997 (13%)

Query: 11   ESYELIYK--DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
            E    +      W     ++  I +            + ++    +   +          
Sbjct: 225  ERRAALIALKAPWATWADELYAICQDAVARKAVDGRKMQER--YFKPWFEKLSAWAADPT 282

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
                 L   FT        E  K  P               +                  
Sbjct: 283  QEELDLGTGFTRLTPEGVAEAWKSDPPSHPAFDAMAGLKAALD-----ALPKPDAAVLQH 337

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
             A++++A +EE K++   + F+D+++  +  L+       +   I ++    LIDE QDT
Sbjct: 338  AAQWVSARFEEEKRRRAEMGFDDMLLRLDAALR-SAGGERLATLIREQFPVALIDEFQDT 396

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
              +Q+ +  S+          +     LF +GD KQ+IY+F GA+    LR +   Q   
Sbjct: 397  DPVQYRIFESIYR-----LEDNDEQNGLFLIGDPKQAIYAFRGADIYTYLRARHATQ--- 448

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                       L  +FRS+  ++  V+ VF   E                +         
Sbjct: 449  ------GRWHTLDTNFRSSHAMVESVNHVFMRAEQRAEGRGAFLFRDGEDNPVPFSSALA 502

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI------GTDTI 362
            Q  ++ +    S               +        LA   A  I  ++          +
Sbjct: 503  QGRKETLELDGSPLAALTIWQLESEQPVSGVVYRQQLASSCASEIVRLLNTGQQSRAGFV 562

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
              +   R ++  DI +LVR  K+   +             SV  +D+  +       DL+
Sbjct: 563  APDQTLRGLRPADIAILVRDGKEAQAVRSQLSA---RGVRSVYLSDKDSVFAAQEAHDLL 619

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            +  +     + + +    L     N    ++ ++           E   +        ++
Sbjct: 620  SWLKACAEPDSERTLRAALACITLNLPLAELERLNQD--------ELAWERRVMQFRSYR 671

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             + +    L  + +          ++    G +   +         L E L         
Sbjct: 672  DIWRIQGVLPMLRRLLHDFALPQTLISRTDGERVLTNLL------HLSELLQQAAAELDG 725

Query: 543  SYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              + ++ L   L               ++   V+++T+H +KGL+ P+VFL    S    
Sbjct: 726  EQALIRHLSDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPV 785

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                  +    +            +++       +LI+H       E  RLLYV +TR+ 
Sbjct: 786  DGSRLPLQFHDAEG----------RAQISLQPTEELIQHADNERLAEDLRLLYVALTRSE 835

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
                +   ++      ++       +         + +        +D           P
Sbjct: 836  HACWL-GVADLKRGNANSSMLHRSGLGYLLGGGAALPESAALKVWLRDLAEGCPAIALQP 894

Query: 720  ENTPLEREETIKQLMD---------EQKIPKKLFSPIKN--------DINEPYILNPSTI 762
               P        +             + +     +               +    +P   
Sbjct: 895  VPEPTADSFVAPRSEASLVKLLVPKRRAVENWWIASYSALRIGDTVTAGADESPDSPQAQ 954

Query: 763  DTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV-------IFTLPEHKRKN 803
                   L+                  +  N G  +H LL+        +        ++
Sbjct: 955  KLFDDERLDPEAPRDILVGGADIHRFPRGPNPGTFLHGLLEWAGNDGFALTAHNIELIRD 1014

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENP-------MMTTAMSCDSYS-EVSV---S 852
             +   C +       +  ++ L  +  +  +         +      + Y  E+     S
Sbjct: 1015 AVARRCHRRGWAGWIETLRDWLHQLLNMPMHLSPDAAPVALGDLNQPNQYRVEMEFWFAS 1074

Query: 853  GKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKTHHHVP 890
              +N  + D ++                       G ID     +   ++ +YK++    
Sbjct: 1075 NHVNVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHEGRYYVADYKSNWLGA 1134

Query: 891  QEIEH---------IPYTHIAQLSIYEKILKDSYPNK 918
             +  +         +   +  Q  +Y   L      +
Sbjct: 1135 DDDAYTELAMEASILDNRYDLQYVLYLLALHRQLKAR 1171


>gi|206577442|ref|YP_002241158.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae 342]
 gi|206566500|gb|ACI08276.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae 342]
          Length = 673

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 98/654 (14%), Positives = 207/654 (31%), Gaps = 121/654 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVVLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+A           + ++        K
Sbjct: 305 ------------ELGYGTELKVLSANNEDHEAERVA---------GELIAHHFINKTNYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +   +        +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        + ++               G         +
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMSRNKGLFTASFDMGLSQTLTGRGYESLTRFTHW 459

Query: 488 IHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  + +        D    I       +   S    E  +  +++   +        
Sbjct: 460 LREIQQLTEREPVAAVRDLIRGIDYESWLYETSPSPKAAEMRMKNVNQLFTWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V+LV     +  
Sbjct: 520 EIDEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVYLVGMEEGLLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +L            +  +      + +   +D   ++ +   S  +       
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVISAEERMHKGQA 658


>gi|254510735|ref|ZP_05122802.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium KLH11]
 gi|221534446|gb|EEE37434.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium KLH11]
          Length = 837

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 113/683 (16%), Positives = 199/683 (29%), Gaps = 178/683 (26%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+   ++   +DF DL+++   + +       +  +  +   +IL+DE QDT++ 
Sbjct: 195 ELYAQYQTRLRELNAVDFGDLLLHMVTIFQTHGD---VLEQYQRWFRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L              + +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLAG----------GHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGAF--- 298

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V    E   G                      +LW
Sbjct: 299 -----VVRLEQNYRSTPHILAAASNVIRGNEKRLGK---------------------ELW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +   ++     ++D   +       AR I   I  M G          R +
Sbjct: 333 -------TDRKEGEKVRLIGHWDGEEE-------ARWIGEEIDAMQGG-----TRGVRPM 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              ++ +LVR                    +           + + I+D MA  R ++S 
Sbjct: 374 NLDEMAILVRASHQMRAFEDRF----LTIGLPYKVIGGPRFYERMEIRDAMAYFRLVVSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE------YIQKFANCGISKFQHV 484
           EDDL+F  ++ +P     +     I  T R    ++ E        +     G++  + +
Sbjct: 430 EDDLAFERIVNTPKRGLGDKAQQTIQMTAREHGVSLVEGARIVVEEKLIGARGVNALREL 489

Query: 485 IKYIHEL-------------IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
           I  +                   A   S        LGA++    +         +  DE
Sbjct: 490 IDGLARWNVVVGTRRTAPPSRRNAAPPSARKRVARPLGAEEYDASYRQHEYEGRTEYEDE 549

Query: 532 FLN-FTLRNEQN--------------------------------------------SYSS 546
            +       E++                                               +
Sbjct: 550 VVEPIVEPFEESQTSNYDHIELAQIVLDESGYTAHWQNEKTPEAPGRLENLKELVNQLDN 609

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            + L   LE     +      +  +V IMT+H AKGLE P VFL      +F  +     
Sbjct: 610 FENLQGFLEHVSLVMDNEQDGDGAKVSIMTLHAAKGLEFPAVFLPGWEDGLFPSQRS--- 666

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                        +        EE  RL YVG+TRA +   I  
Sbjct: 667 -----------------------------MDESGLKGLEEERRLAYVGITRAEEVCTISF 697

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
            +N                   F   +     +  + + +D          +    P   
Sbjct: 698 AAN----------------RRVFGQWQNSMPSRFIDELPEDHVEVLTPPGLYGGGQPAAS 741

Query: 727 EETIKQLMDEQKIPKKLFSPIKN 749
            ET     +    P       + 
Sbjct: 742 IETRAAEANVYNSPGWKRMQARQ 764


>gi|167847823|ref|ZP_02473331.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei B7210]
          Length = 639

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 98/564 (17%), Positives = 177/564 (31%), Gaps = 130/564 (23%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R +    + ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPTELFARNE---PVRDRWQNRLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RTQFRDYAILYRGNFQARVFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL----- 533
               +I  L   A          D    I         +  R        + EFL     
Sbjct: 466 IFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKR 525

Query: 534 -------NFTLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVH 578
                     +  E   + +   L          ++             + + VR+ TVH
Sbjct: 526 KGTKPEAEQAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H        +                             
Sbjct: 586 ASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDD--------------------------- 618

Query: 639 LKKSTQEEYNRLLYVGMTRASDQL 662
                 EE  RL+YV +TRA   L
Sbjct: 619 ---ERIEEERRLMYVAITRAQRSL 639


>gi|323698851|ref|ZP_08110763.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323458783|gb|EGB14648.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 1051

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 134/966 (13%), Positives = 280/966 (28%), Gaps = 128/966 (13%)

Query: 18   KDLWPLPYFQVSDINKYVS--LSMETGNPTILKKAQTLQQASQTQCIE-----------E 64
             +L            + +   LS++ G     +  + + +A +                +
Sbjct: 161  AELLACAEKSWESFRQLLPEPLSLQDGRRLDDELRRAVDEALRDLPAPGDGTKATEGVRD 220

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK-ST 123
            R  ++ +           + I+          ++ ++   +   ++      +   +   
Sbjct: 221  RLRIIRNNMRNGAPGCWGDWISLAKFAPGKQSRDIVQPITELAEQVLGHPRLHHDVETYI 280

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                  A      Y++ KK   ++DF D    T  LL+  D+      ++ + ++ +++D
Sbjct: 281  RKMFECASDAMGRYQQYKKDLGLIDFTDQEALTLSLLENDDIGQ----RLRERLDLLMVD 336

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS IQ  +   L++                 VGD+KQSIY+F G +P  +      
Sbjct: 337  EFQDTSPIQLALFLRLSQVAGKS----------VWVGDQKQSIYAFRGTDPGLMDAV--- 383

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         +  L  S+RS  D++   +  F       G+                
Sbjct: 384  -------VENVDRVEVLGESWRSQPDLVRFANAFFGAAMRPHGIPAAQ------------ 424

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                V+L  +VV                      Q ++ ++ A  +A  I +++ +    
Sbjct: 425  ----VELVPKVVELETDDP--------HLMCWRLQANNKTVEAACLASGIVDLLSSAGRH 472

Query: 364  S-----NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +      G  R ++  DI VL  K  +  L+            +      R  L      
Sbjct: 473  AVLDKATGGARPLRPGDIAVLCLKNHECELVAEALNDRGIRAAVP-----RPGLMAQPET 527

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +  +A  R++  + D L+               ++ ++       +     ++      +
Sbjct: 528  QLALAAFRYLADESDLLAV-------------AEMARLLAGEEGPDWWLPLVRPGDLEAV 574

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTL 537
             +    I  +          +  +   L +     R    S       +  LD    + L
Sbjct: 575  KERIPAIHRLDAARSNLVQLTAVETLDLAVSLVDARPVAKSWPHPGNRLANLDALRGYAL 634

Query: 538  RNEQNSYSS--------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
              E    +S        L    S L       K+A     + V+++T H +KGLE P+V 
Sbjct: 635  AYEDACGASRSPATSAGLLAHFSRLAA-DKEDKQAEGGGSDAVQVLTYHRSKGLEWPLVV 693

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS--------------DL 635
            L    S          +       D                  +                
Sbjct: 694  LTGMDSVDNPRIFGLNVCSDSETFDMDNPLAGRWLRFWPWPFGAGRRIPALEEALEGTAA 753

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
             +  +   + E  RLLYVGMTRA D L++        +  ++      +        E+V
Sbjct: 754  QRRAEAMERRERLRLLYVGMTRARDHLVLAARIPGKTDGTTS-----WLDACVDETGEKV 808

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                L   +      A   +     +   E E  +      +     +    +       
Sbjct: 809  FVFPLEPGVQTIRVGADHQARIDVGSFAPESEGAVPPPGVPRTPALPVEPAGREPARFAL 868

Query: 756  ILNPST----IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCT 810
               PS      +         +         G  +H  L  +   L    R+    +   
Sbjct: 869  GGYPSNGTVRTEAVRIGPPYPIGKREDPARLGSAVHAFLGAVPGGLDRAVRETRAQAVLA 928

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
                     +   L     R L   +          +E  V    +  +     +G +D 
Sbjct: 929  DWE--LSEVDAATLCEMQDR-LAAFIGERFGDPGVRTEWPV----HLRRGPASGAGWVDM 981

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSE 929
            +    +   I ++KT       +E    ++  QLS Y + +  +   + +    + +   
Sbjct: 982  LLGLPEADVIIDHKTATGSADRLEAKAASYAGQLSAYAEAMSKA-SGRPVRETWIHFPLA 1040

Query: 930  PKVFII 935
              +  +
Sbjct: 1041 GLMVNV 1046


>gi|325499250|gb|EGC97109.1| ATP-dependent DNA helicase Rep [Escherichia fergusonii ECD227]
          Length = 673

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAERKPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEEVDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 IWEQERKVVSAEE 651


>gi|312963830|ref|ZP_07778301.1| ATP-dependent DNA helicase RepA [Pseudomonas fluorescens WH6]
 gi|311281865|gb|EFQ60475.1| ATP-dependent DNA helicase RepA [Pseudomonas fluorescens WH6]
          Length = 669

 Score =  247 bits (630), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 98/636 (15%), Positives = 210/636 (33%), Gaps = 125/636 (19%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
             +    ++K  +   +++ I         +  K        A  +  HY+   K    +
Sbjct: 127 AGDDGVDEIKNMIGAWKNDLILPAQALENARNPKE-----QTAAIVYTHYQRTLKAFNAV 181

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI+    L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L        
Sbjct: 182 DFDDLILQPVKLFQEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG------ 232

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
               +      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST
Sbjct: 233 ----TRNQFTVVGDDDQSIYAWRGARPENLMLLKVDYP--------SLKVVMLEQNYRST 280

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           + IL   + + S   +                         QLW ++    +        
Sbjct: 281 SRILRCANVLISNNPHEFEK---------------------QLWSEMGHGDEI------- 312

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   + +  +    A R+A  I ++           +      D  +L R      
Sbjct: 313 -------RVIRCRNEDAEAERVAVEILSLH---------LRTDRPYSDFAILYRGNYQAK 356

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           LI    +     +++    +          +KDLMA  R I++ +DD +F+ ++  P   
Sbjct: 357 LIELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVINVPRRE 412

Query: 448 FSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSP 500
                + K+         ++Y    +             +     +++ ++        P
Sbjct: 413 IGSTTLEKLGNYATERKISMYAATDEIGLGEHLDTRFTDRLSRFKRFMDKVREQCAGEDP 472

Query: 501 HDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELIS 552
                 ++          +   ++      +  +   +      L  +++   ++++ I 
Sbjct: 473 ISALRSMVMDIDYENWLRTNSSSDKAADYRMSNVWFLIEALKNTLEKDEDGEMTVEDAIG 532

Query: 553 ELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           +L       ++    +    V++MT+H +KGLE P VF++    ++  H           
Sbjct: 533 KLVLRDMLERQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH----------- 581

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                      ++  T EE  RL YVG+TRA   L     +   
Sbjct: 582 ------------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRK 617

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
              +         + +   +D   +    T +  K 
Sbjct: 618 QYGEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKA 653


>gi|271969569|ref|YP_003343765.1| superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270512744|gb|ACZ91022.1| Superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 1051

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 142/934 (15%), Positives = 283/934 (30%), Gaps = 153/934 (16%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRD 112
           +  +  + + E   LL             ++    +    + +L++ L ++ +  +   +
Sbjct: 103 RLLTGPEQLLEVRRLLHGELEDGAPHWPDDMREALKTRGFAQELRDFLSRAAERGLDGDE 162

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEA--KKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
                ++     A    A      Y+         VLD+ DLI     LL   +    +R
Sbjct: 163 LVELGRLHGR--ADWVAAGRFADRYQSRFDLDMEPVLDYSDLIRTAAGLLADPE----VR 216

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            +     + +L+DE QDT   Q  +++ L  +           R L AVGD  QSIY F 
Sbjct: 217 LRERAAYDVVLVDEYQDTDPAQEFLLQQLAGE----------GRDLIAVGDPDQSIYGFR 266

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+ + ++R            G+   +I L +  RS +++L    +V +      G +  
Sbjct: 267 GADVRGIMRFPESFP---GADGENAPVIALRVCRRSGSELLRASRRVAARLPATPGGAAH 323

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                  R+    + G V++                               A+  A  +A
Sbjct: 324 RD----LRALPDAEPGDVRVL--------------------------VTDGATQEAAVVA 353

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            T+                 +    + VLVR    T  +  L R L       VVG    
Sbjct: 354 DTLRR---------AHLLDGVPWSRMAVLVRS--ATRQVPLLRRALVTAGVPVVVGGGEL 402

Query: 411 ILTDHLAIKDLMALGRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            L     ++ L+ L +  L  E  D+     +L   L       + ++       E    
Sbjct: 403 PLFQEPGVRPLIRLIQVALHPETLDEAMAEELLTGALGGTDMVGVRRLRRALRIAEHEAM 462

Query: 469 YIQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                 +      +            ++  + ++  + +           L         
Sbjct: 463 THPDERDMVDHSGERDVAGPRSSGELLVAALKDVRELVRVEPHVALPAERLAKLVSGAAE 522

Query: 518 ISRFGNEVIDVLD----------------------------------EFLNFTLRN-EQN 542
             R G    DVL                                      +   R  ++ 
Sbjct: 523 AVRQGGTAEDVLWTVWQATGLAEKWTGVSVSGGFRGTMADRDLDAVVALFDHAARFVDRL 582

Query: 543 SYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            ++ ++  + +L             + + + VRI+T H +KGLE  VV +       +  
Sbjct: 583 PHAGVEVFVDDLVAQEIPGDSLADRAPDTDSVRILTAHRSKGLEWDVVVVAGVQEGAWPD 642

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
             ++   +      D  +             VS  +         E  RL YV  TRA  
Sbjct: 643 LRLRGSILS----TDDMVARAEGSEHENPAAVSAALAS---QLLAEERRLFYVAATRART 695

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +LI+       +E++ ++     +   +       +   L+ S    +  +       P 
Sbjct: 696 RLIVTAVGGEDSEERPSRFLTELVPGAAEETAVDERSRWLSMSALVADLRSAVSDPTRPA 755

Query: 721 NTPLEREETIKQLM----------DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
           +      E + +L           +   +         +  ++   ++PS ++   K  L
Sbjct: 756 SLRRAAAEHLARLAAEGVSGAHPNEWYALTPISDDRPLSWPDDVVRISPSAVENFTKCGL 815

Query: 771 ESLLS-------DNQTFNRGLIIHKLLQVIFTLPEHK-----RKNFITSYCTKNAKLWPA 818
             LL         +     G +IH L  +  T    +     R + I          +  
Sbjct: 816 RWLLETSVGASGTDAARGLGTVIHALAVLAATGMPSEDTLGKRLDEIWHELDFGGVWYNR 875

Query: 819 KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK-KDIIISGRIDQISIS-QQ 876
           K+ K     I++ +           +    V +         + + I GR+D++    + 
Sbjct: 876 KQRKVAEQMISKFV------RWHQDNPRELVGLEEAFTAMVSEGVQIKGRVDRVERDAEG 929

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              I + KT  + P++ E     H  QL +Y+  
Sbjct: 930 RAVIIDIKTGKNGPKDAE--IERH-PQLGVYQLA 960


>gi|120552955|ref|YP_957306.1| exodeoxyribonuclease V, beta subunit [Marinobacter aquaeolei VT8]
 gi|120322804|gb|ABM17119.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Marinobacter
            aquaeolei VT8]
          Length = 1241

 Score =  247 bits (630), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 137/957 (14%), Positives = 283/957 (29%), Gaps = 121/957 (12%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
                +    W     +V+D+   ++ +      +   K   L+         E   LL  
Sbjct: 243  RANELKAHPWAQWQQEVTDLLNGLNKAKRLHGGS---KNAMLKVWDSLLAWAESDELLPE 299

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
               +      KN   + ++      +   +    + I     F        +      + 
Sbjct: 300  KLDSAAG--YKNQTPEGLDNILKGDEPAPRHPAFDAIDALLAFGQNLPSAKSDILRHASH 357

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            ++ A  E  K++   + F+DL+   +D L        +   I ++    LIDE QDT  +
Sbjct: 358  WVAARLEAEKQQRSEMGFDDLLTRLDDALHGPR-GDQLAATIRRQFPVALIDEFQDTDPV 416

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+ +   +          +     L  +GD KQ+IY F GA+    L+ +          
Sbjct: 417  QYRIFNRIY-----NVEANQPDTCLLMIGDPKQAIYGFRGADIHTYLQAR---------L 462

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED---STTTIRHRSSRIGQVGTV 308
            G +     L  ++RS   +++ V++VF   +           +  +       +   GT 
Sbjct: 463  GVQARTYTLGTNYRSADTMVSGVNRVFEYSDQQSPKGAFLFGNGDSTPLPFQSVAANGTK 522

Query: 309  QLWEQVVSQHDS----QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            +LW        S         +E        L + ++ + +A   A  I+ ++       
Sbjct: 523  RLWAVNGEIQPSLVFWTHESGEEDKEGNPKGLAKGTATADVAETCASEIARLLTLGQAGQ 582

Query: 365  NGKK--------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
             G            ++  DI VLV  R +   +      L      SV  +DR  +    
Sbjct: 583  AGFVLPDNPADLEPVEPSDIAVLVNNRNEAAAVRD---ALGRRRIKSVYLSDRDSVLTSR 639

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
               +++   R              L +P    S   + ++ T     E   E  Q++   
Sbjct: 640  EANEVLCWLRAFAEPRQLAFIRAALATPTLGQSWQALDRLLTDELILEREIERFQRYQQQ 699

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
              S+          L  +  F    +    +L    G ++            + E L   
Sbjct: 700  WQSQ--------GVLPMLRSFLMDFEVPGRLLQRPDGERRLTDIL------HIAELLQQD 745

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRA---HSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                   ++ +      L       +       ++   V+++TVH +KGLE P+VFL   
Sbjct: 746  SLQLDGEHALVHHFTQILRAADEEDEHRTLRLESDAGLVKVITVHKSKGLEYPLVFLPFG 805

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                F  ++ K+ ++    +    + ++ P          + I+   +    E  R LYV
Sbjct: 806  T--AFRAENPKQAYVRYHDDTGKLVTVFDP--------TPEDIERADQERLGEDIRKLYV 855

Query: 654  GMTRASDQLIICKH----SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             +TRA     +          S    +   T    +  +  +  + +       + +   
Sbjct: 856  ALTRARFATWVGAAAVDNWYQSGLGYAIAGTPEQPISQALASLAQGRPEIRITPLPEAGN 915

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK----------NDINEPYILNP 759
              +  +        L      K+           ++ +            D     +L  
Sbjct: 916  TIFTETAPEALGPALISNREAKEDWWIASYSTIEYTGMAGTGITFTGEVEDAQTQNLLEE 975

Query: 760  STIDTKGKTNLESL----LSDNQTFNRGLIIHKLLQV--------IFTLPEHKRKNFITS 807
            S  D   +              +    G  +H+LL+         +   PE   +     
Sbjct: 976  SAQDDTDEAPPVPAVRNHHHFPKGAGPGTFLHELLEWCTAQGFQRVVDNPELLHEQLSRR 1035

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLL-------ENPMMTTAMSCDSYSEVSVS-------- 852
              T+    W       LL  I + L       +   +    S     E            
Sbjct: 1036 CGTRGWGDWIEPLQHWLLELIRKPLRLDRNGEDTASLAQLESLRPELEFWFESRNVSIHT 1095

Query: 853  -------GKINCPKKDI--------IISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
                     +N   +          ++ G ID +   +   ++ +YK++     +  
Sbjct: 1096 LDKLVTRYTLNGADRPRAEANRFNGMLKGFIDLVFEHKGQYYVLDYKSNALGEDDAA 1152


>gi|152972769|ref|YP_001337915.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238892380|ref|YP_002917114.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae NTUH-K2044]
 gi|330012126|ref|ZP_08307288.1| ATP-dependent DNA helicase Rep [Klebsiella sp. MS 92-3]
 gi|150957618|gb|ABR79648.1| Rep helicase, a single-stranded DNA-dependent ATPase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238544696|dbj|BAH61047.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328533941|gb|EGF60600.1| ATP-dependent DNA helicase Rep [Klebsiella sp. MS 92-3]
          Length = 673

 Score =  247 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 101/647 (15%), Positives = 208/647 (32%), Gaps = 123/647 (19%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVVLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+A           + ++        K
Sbjct: 305 ------------ELGYGAELKVLSANNEDHEAERVA---------GELIAHHFINKTNYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +   +        +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        + ++               G         +
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMGRNKGLFTASFDMGLSQTLTGRGYESLTRFTHW 459

Query: 488 IHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +A+        D    I       +   S    E  +  +++   +        
Sbjct: 460 LREIQQLAEREPVNAVRDLIRGIDYESWLYETSPSPKAAEMRMKNVNQLFTWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V+LV     +  
Sbjct: 520 EIDEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVYLVGMEEGLLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 604

Query: 660 DQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            +L   +CK      E    + + + +            +  +T   
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQARKTITPEE 651


>gi|116619175|ref|YP_821331.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
 gi|116222337|gb|ABJ81046.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1088

 Score =  247 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 150/959 (15%), Positives = 276/959 (28%), Gaps = 123/959 (12%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS--LLSS 71
                K  +         ++K  +     G    L+      +  +      R     + S
Sbjct: 181  AAWQKRPFDRDARMARLLDKAEATLRVGGRKESLRPLGEFVERVRRAREAGRLDGDRVES 240

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
              L      +               K+    + +E     + F                 
Sbjct: 241  DLLRLPAELR-----------WVKGKDAAVAAWEELRAAIEEFRCEADADLAAHLRDELW 289

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             +  HY+E K++   LDF DL++   +LL+     A     + +    I +DE QDT  +
Sbjct: 290  EVVGHYQEEKRRAGQLDFMDLLLCARELLRHDGARAD----LQRVYQRIFVDEFQDTDPL 345

Query: 192  QWEVIRSLTEDFFVGKNTH---SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            Q E++  L       ++      +P  L+ VGD KQSIY F  A+ +   R         
Sbjct: 346  QAEILLLLASGDAAERDWRKVTPAPGKLYVVGDPKQSIYRFRRADARLFHRVCSDLLA-- 403

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +  +L  S RSTA I + V+  F          E        + S +      
Sbjct: 404  ----GGVAERKLTSSTRSTAAIQSFVNAAFERSIENYLPLEGGVEAPEGQPSVVALPM-- 457

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                           P+     +  +      S   +A  I   + N  G      +   
Sbjct: 458  ---------------PEPYGSRNISNVKIDACSPDAVAGFI-QWLCNESGWKVRDRSRGW 501

Query: 369  RVIQAKDILVLVR--KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              ++ + + +L R      T L     R L+    I+ +            +  L    R
Sbjct: 502  VPVRPEHVCILFRRFTNYGTDLTQEYVRCLEAR-GIAHLLVGSKSFHRREEVGTLRTALR 560

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +   +D+LS   +L+  LF   +D + +          + E  ++              
Sbjct: 561  AVEWPDDELSVFAVLRGSLFAVMDDVLLRFKNAHGGFHPMKELPEELDEEFAP-IAEAFG 619

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYS 545
             + EL     F    D    +L   +    F  R G E  +  +    +     E +  +
Sbjct: 620  ILSELHRRRNFRPLADTIHELLEKTRAHAGFAFRKGGERVLANVYRLTDLARSFEVSGAA 679

Query: 546  -SLQELISELEQY----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             S +  +  LE        +           V++MTVH AKGLE PVV L D  +++   
Sbjct: 680  TSFRSFVEYLEAEYDGSDTSEAPVLEQEGGGVQLMTVHKAKGLEFPVVILADLTAKLTGP 739

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            +   +            +    P             +   K+ +EE  R+ YV  TRA D
Sbjct: 740  QGADRYSEPELRLCAQRLLWCAPWELVD------AAELEAKADEEEALRVAYVAATRARD 793

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMV-----YDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
             L++        E          +      + +            +  +N+      E S
Sbjct: 794  LLVVAALGEEEREGGWLSPLHEALYPEKERWRNSEEAPGCPPFGWSTVLNRPPEYEEEVS 853

Query: 716  THHPENTPLE-------------------------------REETIKQLMDEQKIPKKLF 744
                 + P                                   +     +   +  +   
Sbjct: 854  VKPGLHRPKAGGHGVVWFDPLVAKRGAVSTEGVENEQVLNGTAQQAADGLRVYEEWRGKR 913

Query: 745  SPIKNDINEPYIL-----NPSTIDTK-----GKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
            +    +   P I      + S  D           L  +         GL++H++LQ   
Sbjct: 914  AARIAEGGVPRIRTKVAQSVSRADEAAGIVVETVTLPGVAGRPGGRKFGLVVHEILQR-- 971

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
                 +  + I        +   A E +        L     +        Y E+ V  +
Sbjct: 972  ----AESADEIAGLAAVWGRRHGASEPEIAAAGEAALAALAAIVVPEGAKRYREMPVMVR 1027

Query: 855  INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            +       I+ GR+D          + +YKT     + +         Q+ +Y   L+ 
Sbjct: 1028 LE---DGTIVDGRVDCAWSDGTQWVVIDYKTDRREKRNVA--------QVQLYGLALQR 1075


>gi|189463365|ref|ZP_03012150.1| hypothetical protein BACCOP_04082 [Bacteroides coprocola DSM 17136]
 gi|189429794|gb|EDU98778.1| hypothetical protein BACCOP_04082 [Bacteroides coprocola DSM 17136]
          Length = 1110

 Score =  247 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 123/798 (15%), Positives = 255/798 (31%), Gaps = 93/798 (11%)

Query: 152  LIINTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            L+ +TN LL    +   ++++  KI   I+ ++IDE QDTS +QWE    L E+    K 
Sbjct: 391  LLSDTNALLHGLIREGDASFVYEKIGTTIDTVMIDEFQDTSRMQWENFHLLLEESLAQKE 450

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                      VGD KQSIY +   + K +                +     L  ++RS A
Sbjct: 451  GS------LIVGDIKQSIYRWRNGDWKILAGLGED-------KTLRVRECTLGTNWRSEA 497

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
             I+   +++F+          +          +             V Q  ++ + +   
Sbjct: 498  RIIHFNNEIFTAACKVLNQRYEDEMGEPCIQLQHAY--------SDVCQQTAKKDEKGYV 549

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
              S+     +   A  +   +A  + ++I             ++  DI +LVRK K  P 
Sbjct: 550  KLSFLSDEKEHPYAETMLEELASEVVSLINQG----------VRTNDIAILVRKNKTIPA 599

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            I              +V ++ F L   LAI  ++   R++ S +D ++   +  +     
Sbjct: 600  IADYF---DKHTPYRIVSDEAFRLDASLAICMMIDGLRYLTSPDDHIALARLATAYQREV 656

Query: 449  SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
             + +I       ++ ++                         L    +    ++    + 
Sbjct: 657  LKRNIDLNTVLLNQVKSYLPASFVL-----------------LREELRLMPLYELLEKLF 699

Query: 509  GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                       +   +    +  F +      QN+ S L   IS  ++            
Sbjct: 700  ILFD------MQLIEKQDAYICAFYDAVTEYMQNNSSELTAFISYWDERLHEKTIPSGE- 752

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH---------IMPSLNDDPGIP 619
               +RI+++H +KGLE   V L     ++ +  +   +                ++  I 
Sbjct: 753  IEGIRILSIHKSKGLEYHTVLLPFCDWKMENETNSHLIWCSVAGTAKNTDRPPFNELDIV 812

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                      ++  D     +     +   LLYV  TRA   LI+   +           
Sbjct: 813  PVNYSGAMAESVYRDSYLEERLQLWVDNLNLLYVAFTRACKNLIVWGKAKQKG------- 865

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
            +  +++ ++  +     +     +  ++E      S  +        EE  K+  +    
Sbjct: 866  SVSELLLEALPHVSLTMEETSPEAAEENESSGETNSEIYEFGKLCVSEEKKKKETENPLA 925

Query: 740  PKKLFSPIK-NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
             +    PI+   I        S          E      +   +G ++H +   I    E
Sbjct: 926  AQSENIPIRIESIETEIEFKQSNRSADFIRGDEEDDKTGRYIRQGQLLHNVFASI--RQE 983

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK-INC 857
                  I         L  A++ + +       L NP +    S +   E+      I  
Sbjct: 984  SDLPQAIER-LRFEGILESAEQEQQIYKLAQWALGNPKVKDWYSGE--WELYNECSIIYT 1040

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              + I+ + R D++ +    + + ++K               +  Q+S Y  +L      
Sbjct: 1041 DDEGIMQTRRPDRVMMKDGQVIVVDFKFGKP--------KDGYRQQVSEYMDLLSAM-GY 1091

Query: 918  KSLVCLLIYVSEPKVFII 935
            + +   L YV   ++  +
Sbjct: 1092 EQIKGYLWYVFANELEEV 1109


>gi|110807532|ref|YP_691052.1| ATP-dependent DNA helicase Rep [Shigella flexneri 5 str. 8401]
 gi|110617080|gb|ABF05747.1| ATP-dependent DNA helicase rep [Shigella flexneri 5 str. 8401]
          Length = 678

 Score =  247 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 116 TDQLALLKELTEGLIADDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 173

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 174 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 230

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 231 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 272

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 273 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 309

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 310 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 348

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 349 DYAILYRGNYQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 404

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 405 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 465 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 524

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 525 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 585 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 609

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 610 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 656


>gi|226360933|ref|YP_002778711.1| exodeoxyribonuclease V beta chain [Rhodococcus opacus B4]
 gi|226239418|dbj|BAH49766.1| exodeoxyribonuclease V beta chain [Rhodococcus opacus B4]
          Length = 1103

 Score =  247 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 133/888 (14%), Positives = 254/888 (28%), Gaps = 160/888 (18%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            +  A+ + A  E  K+   + DF+DL +  + +L   +  A    ++ +    +L+DE Q
Sbjct: 210  VAFAEAVRAEVERRKRAVGLRDFDDLPMLLHRVLSDPEHGAAACRRVRERYGVVLVDEFQ 269

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +QW+++R                 TL  VGD KQ+IY+F GAE    L   R    
Sbjct: 270  DTDPLQWDILRRTFH----------GNGTLVLVGDPKQAIYAFRGAEVLSYLDAVR---- 315

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                        EL  ++RS  ++L               L        R   +R     
Sbjct: 316  ------SADRHQELTTNWRSDQELLDG----LEYLHGGAELGHPEIVVHRVDGARPKSRL 365

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            T     ++     +   P  +S      +L +  +A + A  +A       G  T+   G
Sbjct: 366  TGAAPLRLRYLPRTGAGPINKSGYPAVGALRKRIAADLAADLVALL----DGGATLDVGG 421

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R+++  DI VLVR      ++        +   +  V      +    A +  + + +
Sbjct: 422  TTRLVEPGDIAVLVRTNAQITVVHDAL----DRAGVPSVLAGGASVFTTPAAQHWLWILQ 477

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             I              +PL   + +++                       G      V  
Sbjct: 478  AIEQPHRADRVRLAALTPLLGHTAEELDA--------------------HGDDIVAEVGA 517

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQN 542
             + EL  +         F  +        + +     E        + + LN     +  
Sbjct: 518  QLRELGAVFAQSGFAALFERLSAVGALEARLLRVAAGERALTDLRHVAQLLNSAAVEQSL 577

Query: 543  S----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                    L E + +         R   ++   V+I TVH +KGLE P+V+L        
Sbjct: 578  GLTAVTRWLTERMKDPTTGGVDRSRRLDSDAAAVQIATVHASKGLEFPLVYLPYAWDAAK 637

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              K  K +      +DD G  I            +D           E  RLLYV +TRA
Sbjct: 638  ISKPSKLLL-----HDDDGRRILDVGGPGSPG-YADRRNRHDAEEAGEELRLLYVAVTRA 691

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMV-------------------YDSFHNDERVKKIK 699
               L++      +       R     +                              +  
Sbjct: 692  MCGLVMWWAPAFTTPAAPLHRMILGRLPGQREVPQKVIVPEDPIVAERLSAWGTAAPETV 751

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
               ++  +      W+     +  LE     ++L+D +       +   +  + P + + 
Sbjct: 752  TVEAVGCEPIPRVGWTPEREPSGDLEAAR-FRRLLDTRWRRTSYSALTASAHDAPAVGSE 810

Query: 760  STIDTKGKTNLESLLSDNQ---------------TFNRGLIIHKLLQVIFTLPEHKRKNF 804
            + ++ K     E  L                       G ++H + +++ T         
Sbjct: 811  AEVEEKTDEPDEPPLHAPDGVTAGVPSTMNELPGGATFGTLVHAVFEIVDTAAPDLDDEV 870

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSVSGKINC 857
            +       A      +   L  ++  +L  P+       +      D  +E+     +  
Sbjct: 871  LRCCRDVIASTLSDVDPAQLATALVPVLRTPLGAGAERTLADLAPADLLAELDFELPLAG 930

Query: 858  PKKD---------------------------------------IIISGRIDQISISQQ-N 877
                                                         ++G ID +       
Sbjct: 931  GDTPSLTVMLDGVGRLLRTHLPENDPLRSYADAVQTLEPTPLRGYLTGSIDAVLRLPGPR 990

Query: 878  IFIFEYKTHHHVPQE------------IEHIPYTHIAQLSIYEKILKD 913
              + +YKT+     +             E +   +  Q  +Y   L  
Sbjct: 991  YVVVDYKTNRLAQGDLTTAHYTRGSMAAEMLRAHYPLQALLYSVALHR 1038


>gi|224372542|ref|YP_002606914.1| ATP-dependent DNA helicase PcrA [Nautilia profundicola AmH]
 gi|223589142|gb|ACM92878.1| ATP-dependent DNA helicase PcrA [Nautilia profundicola AmH]
          Length = 665

 Score =  247 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 99/541 (18%), Positives = 185/541 (34%), Gaps = 120/541 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
             ++   Y++   +N ++DF+DL++ T  +L + D    +  +I  +  +I++DE QDT+
Sbjct: 161 LAHIYDKYQKYLLENNLVDFDDLLLLTYTILNENDD---LCREISDKYQYIMVDEYQDTN 217

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ  +++ L            +   +  VGD+ QSIY F GA  K +L  ++       
Sbjct: 218 EIQLLLLKKLCR----------THNNICVVGDDDQSIYGFRGANHKNILNFEKDF----- 262

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL   + + S  +        S           G    ++
Sbjct: 263 ----DAKVIKLETNYRSTNQILKAANSLISFNKMRYDKKLKSAL---------GDGKEIE 309

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L                           +  +    A  IA  I N+I            
Sbjct: 310 LL--------------------------KSYNEMAEAEAIAKRIKNLIDRG--------- 334

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +  K+I VL R    +  I    R     + I+          +   IKDL++  R  +
Sbjct: 335 -VNPKEIAVLYRINALSRSIEDGLRT----HGITYKLVGGMRFYEREEIKDLISYLRVFV 389

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +  DD SF  ++  P     +  I K+   +     +    +   +    K    +K + 
Sbjct: 390 NPNDDYSFKRIINKPKRGIGKTTILKLEEAKGNKSFLEFIKEDDLSFLSKKAAKTLKDLE 449

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           + I         +    I    +    +      +    ++EF      +E+    +L+E
Sbjct: 450 KTIEFLSSLPIEELPEAIEKTLELSTSY---KDEDKRRNVEEFYGMM--HERKDL-NLRE 503

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++EL       K         + +MT+H +KGLE   +F++      F           
Sbjct: 504 FLNELSLESDQDKITDE----MINVMTIHASKGLEFEHLFVIGMEEGFFPLN-------- 551

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                          ++  EE  RL YV +TRA  +L +    +
Sbjct: 552 -------------------------------EADIEEERRLAYVAITRAKKELTLSYVES 580

Query: 670 T 670
            
Sbjct: 581 R 581


>gi|218697495|ref|YP_002405162.1| ATP-dependent DNA helicase Rep [Escherichia coli 55989]
 gi|218354227|emb|CAV00880.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli 55989]
          Length = 673

 Score =  247 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 208/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  +  +      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIVHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +         + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVLPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|295678114|ref|YP_003606638.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295437957|gb|ADG17127.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 696

 Score =  247 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 95/578 (16%), Positives = 182/578 (31%), Gaps = 130/578 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L    +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AAIVYRNYVATLHAYQAVDFDDLIRLPAELFASNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +       
Sbjct: 232 ACQYELVKLLAGKRAA----------FTAVGDDDQAIYGWRGATLENLGQLGKDFPN--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S                  
Sbjct: 279 -----LHLIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWS------------------ 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 316 -----------------EHGMGDTITVTGCNDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  +L R      +   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 350 RANFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDICAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           +  DD +F+  + +P        +  +     +   +++E +       + +   I   +
Sbjct: 406 NANDDPAFIRAITTPRRGVGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSPRQIEPMR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLR 538
               ++  L   A+  +       ++ A          F           + EF+ +  R
Sbjct: 466 AFCDFMQRLTDRAEKDAAGTLLDELMEAIHYEAYLYDAFDERQAQAKWQNVLEFIEWLKR 525

Query: 539 ------------NEQNSYSSLQELISE-------LEQYPPTIKRAH-SANHNEVRIMTVH 578
                       NE   Y +              ++             + + VR+ TVH
Sbjct: 526 KGTKEEPEHGSGNEATGYDTADGFGDTGKNLLGLIQTVALMSMLEGREEDPDAVRLSTVH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H+       +                             
Sbjct: 586 ASKGLEYPHVFLVGVEEGIMPHRGGADDEPIDD--------------------------- 618

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
              +  EE  RL+YV +TRA   L +         +++
Sbjct: 619 ---ARIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 653


>gi|189911536|ref|YP_001963091.1| DNA/RNA helicase UvrD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776212|gb|ABZ94513.1| DNA/RNA helicase UvrD [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
          Length = 671

 Score =  247 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 90/596 (15%), Positives = 188/596 (31%), Gaps = 124/596 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +A  +   YE+  K+   +DF+DLI+    LL +      I     ++  + L+DE QDT
Sbjct: 162 VAAEIFPLYEDGLKEKNAIDFDDLILLPKRLLAEFPE---IAAYYQRKHEYFLVDEFQDT 218

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q+E +               +   L  VGD+ QSIY+F G+  + +L  +R      
Sbjct: 219 NQLQYEFLSLF----------RGNSDNLCVVGDDDQSIYAFRGSNVQLILNFEREFPH-- 266

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   ++ L  ++RST+ I+   + +       +  +  S                 
Sbjct: 267 ------AKVVRLLENYRSTSLIIQAANSLIQNNIGRKEKTLYSRIPSA------------ 308

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                           ++  +    D   +       A  +A  I  ++          K
Sbjct: 309 ----------------ERVEYYETADEREE-------AIFVAGRIQTLL---------IK 336

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              + K+I +L R    +       R    +  I       +   D   I+D ++  R++
Sbjct: 337 NEFKGKEIAILFRTNFQSRPFEEELR----NRSIPYKVVGGYNFFDRKEIRDCISYLRYV 392

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCG---------- 477
            + +DD S + ++  P        + K+         ++YE   K               
Sbjct: 393 ANPKDDYSLLRIINYPKRGIGPGTMQKLQEEAFTHKLSLYEIFHKMIESPDYLPEVKAKV 452

Query: 478 ISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDE 531
             +    ++ +       A           ++      ++       E      I  L E
Sbjct: 453 RQEIYQFVEMVDAFKKKFAMSQKLAPVLREMITQIGFEREISMEETEEKVVKARIYNLSE 512

Query: 532 FLNFTLRNEQNSY----SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +N     E+       +++ + +  L        +    +   V+++T+H +KGLE  +
Sbjct: 513 LVNMLSFFEEEEGREGKATIFDFLQRLVLLMEDEPKEDEEDR-RVQLLTMHQSKGLEYDL 571

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFLV     +  +  + +        +                                 
Sbjct: 572 VFLVGLEEGILPNSRVIEEEGEVVDEE--------------------------------- 598

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            RLLYVGMTR   +L +          +  +      + +   +      ++  + 
Sbjct: 599 RRLLYVGMTRPRRKLYLTSARTRRKFGEQIESAPSRFLNELSQDAVLFFPMETKDR 654


>gi|294637927|ref|ZP_06716196.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda ATCC 23685]
 gi|291088953|gb|EFE21514.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda ATCC 23685]
          Length = 700

 Score =  247 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 106/697 (15%), Positives = 220/697 (31%), Gaps = 127/697 (18%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           L+  +   +A   +     F       L    T +       + K    L++ +    + 
Sbjct: 116 LEIIKREYKALAMKPNFSLFDDQDQLALLTDLTER------WLEKDKTQLQQLIATISNW 169

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + D      + +S      L     A Y+   K   VLDF+DLI+    LL++    
Sbjct: 170 KNDLIDPSQAAALARSPRD--RLFADCYALYDAQLKSCNVLDFDDLILLPTLLLRRD--- 224

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R +  Q I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSI
Sbjct: 225 QTVRERWQQRIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSI 274

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YS+ GA P+ ++  K               +++L  ++RS+  IL   + + +   +   
Sbjct: 275 YSWRGARPQNLVLLKEDFPA--------LRVVKLEQNYRSSQRILKAANILIANNPHMFE 326

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               S              G  +  + + + ++                          A
Sbjct: 327 KRLFSEL------------GYGEPLKVITANNE-----------------------EHEA 351

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            R+            + ++         D  +L R    + +   +        +I    
Sbjct: 352 ERVV---------GELIAHHFINKTAYSDYAILYRGNHQSRVFEKML----MQNRIPYKI 398

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
           +          IKDL++  R + + +DD +F+ ++ +P        + K+         +
Sbjct: 399 SGGTSFFSRAEIKDLLSYLRVLTNPDDDSAFLRIVNTPRREIGPATLQKLGEWANQRGIS 458

Query: 466 VYEYIQKFANCGISK---------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
           ++            K         F H +  I  L       +  D    I       + 
Sbjct: 459 LFRASFDVGLEQTLKGPRLASLQHFTHWLAEIATLCERDATAAVRDLIHGIDYESWLFET 518

Query: 517 FIS-RFGNEVIDVLDEFLNFTLRNEQ----NSYSSLQELISELEQYPPTIKRAHSANHNE 571
             S R     +  +++  ++     Q    +   +L ++++         +       ++
Sbjct: 519 SASPRAAEMRMKNVNQLFSWMTEMLQGNDLDEPMTLTQVVNRFTLRDMMERGESEEEADQ 578

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V++MT+H +KGLE P V+LV     +  H+                              
Sbjct: 579 VQLMTLHASKGLEFPYVYLVGMEEGILPHQSSID-------------------------- 612

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                    +   +E  RL YVG+TRA  +L+           +  +      + +   +
Sbjct: 613 ---------EENVDEERRLAYVGITRAQRELVFTLCRERRQYGELVRPEPSRFLLELPQD 663

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
           D   +  +   S  +          +        +  
Sbjct: 664 DLLWESARKVVSPEERMQRGKSHLANLKAQLARAKSS 700


>gi|262040910|ref|ZP_06014136.1| ATP-dependent helicase PcrA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041799|gb|EEW42844.1| ATP-dependent helicase PcrA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 673

 Score =  247 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 101/647 (15%), Positives = 209/647 (32%), Gaps = 123/647 (19%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVVLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+A           + ++        K
Sbjct: 305 ------------ELGYGAELKVLSANNEDHEAERVA---------GELIAHHFINKTNYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +   +        +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        + ++               G         +
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMGRNKGLFTASFDMGLSQTLTGRGYESLTRFTHW 459

Query: 488 IHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +A+        D    I       +   S    E  +  +++   +        
Sbjct: 460 LREIQQLAEREPVNAVRDLIRGIDYESWLYETSPSPKAAEMRMKNVNQLFTWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V+LV     +  
Sbjct: 520 EIDEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVYLVGMEEGLLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 604

Query: 660 DQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            +L   +CK      E    + + + +            +  +T+  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQARKTITSEE 651


>gi|281603168|gb|ADA76152.1| ATP-dependent DNA helicase rep [Shigella flexneri 2002017]
          Length = 678

 Score =  247 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 116 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 173

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 174 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 230

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 231 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 272

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 273 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 309

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 310 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 348

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 349 DYAILYRGNYQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 404

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 405 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 465 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSTKAAEMRMKNVNQLFSWMTEMLEGS 524

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 525 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 585 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 609

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 610 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 656


>gi|42713|emb|CAA28481.1| rep helicase [Escherichia coli]
          Length = 637

 Score =  247 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 98/606 (16%), Positives = 198/606 (32%), Gaps = 121/606 (19%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 L  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RLLLHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R     +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRNGWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIIC 665
            +L   
Sbjct: 605 KELTFT 610


>gi|330815075|ref|YP_004358780.1| UvrD/REP helicase [Burkholderia gladioli BSR3]
 gi|327367468|gb|AEA58824.1| UvrD/REP helicase [Burkholderia gladioli BSR3]
          Length = 694

 Score =  247 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 98/577 (16%), Positives = 185/577 (32%), Gaps = 129/577 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L    +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPTELFAANE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   +   
Sbjct: 232 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPR--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +++L  ++RST  ILT  + V +           S           G   T+ 
Sbjct: 279 -----LHLVKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDTIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RTQFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  + +   +   +++E +       + +   I   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGSYAGQAKVSLFEAVYMGGIEARLSARQIEPLR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNF--- 535
               +I  L   A           ++ A             R        + EFL +   
Sbjct: 466 MFCDFIQRLTERADKDPATTVLDDMMEAIHYEAYLYDAFDERQAQSKWQNVLEFLEWLKR 525

Query: 536 --------TLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVHT 579
                    +  E   + +   L          ++             + + VR+ TVH 
Sbjct: 526 KGTKPETEAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVHA 585

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P VFLV     V  H+   +   +                              
Sbjct: 586 SKGLEYPHVFLVGVEEGVMPHRGGSEDDTIDD---------------------------- 617

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                EE  RL+YV +TRA   L +         +++
Sbjct: 618 --ERIEEERRLMYVAITRAQRSLHLNWCKKRKRARET 652


>gi|296105331|ref|YP_003615477.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059790|gb|ADF64528.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 674

 Score =  247 bits (629), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 99/668 (14%), Positives = 213/668 (31%), Gaps = 121/668 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    +          K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLMTPAQAAASAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSKDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      + K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTEYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +   +        +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        ++++               G         +
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQTLTGRGYDSLTRFTHW 459

Query: 488 IHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +A+        D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEVQRLAEREPVAAVRDLIHGIDYESWLYETSASPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V+LV     +  
Sbjct: 520 EIDEPMTLTQVVTRFTLRDMMERGESEEEADQVQLMTLHASKGLEFPYVYLVGMEEGLLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   +  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVITAEERMHKGQANVANIR 664

Query: 720 ENTPLERE 727
                 +E
Sbjct: 665 AMLAKAKE 672


>gi|255009003|ref|ZP_05281129.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12]
 gi|313146743|ref|ZP_07808936.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12]
 gi|313135510|gb|EFR52870.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12]
          Length = 1057

 Score =  247 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 120/813 (14%), Positives = 255/813 (31%), Gaps = 99/813 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    +  ++N       L+ +TN LL +      S+++  KI   I +++ID
Sbjct: 337  VQLLANIDEEVRQLNRENNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIRNVMID 392

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  + L  +                VGD KQSIY +   +   +    + 
Sbjct: 393  EFQDTSRMQWDNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLNKR 446

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                            L  + RS  +I+   + +F+   +      +             
Sbjct: 447  LGYF------SIRTETLKTNRRSETNIIRFNNSIFTAAVDYLNEIHNKQLGSVCEP---- 496

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                  L              +Q+ +         E                +I   T  
Sbjct: 497  ------LINAYADVEQESPRNEQKGYVKVEFLESDEKHDYTE--------QTLISLGTEV 542

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
             +  +  I+  DI +LVRK K  P I              VV ++ F L   LAI  ++ 
Sbjct: 543  EHLIQSGIKLNDIAILVRKNKSIPRIADYF---DKQLHYKVVSDEAFRLDASLAICMMLD 599

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
              R++   E+ +    +        +   +  + T+ +    ++   ++           
Sbjct: 600  ALRYLSDPENRIVKAQLA-------TNYQLQVLHTENNLNSLLFHKAEELLPSV------ 646

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             ++ + EL         ++    +    +  +        +    L  F +      Q+ 
Sbjct: 647  FLERMAELR----LMPLYELLEELFNLFELHR------IEQQDAYLFAFFDAVTDYLQSH 696

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S     I   ++   + K   S     +RI ++H +KGLE   V L     ++ +  + 
Sbjct: 697  SSDTDSFIRYWDET-LSGKTIPSGEVEGIRIFSIHKSKGLEFHTVLLPFCDWKMENETNN 755

Query: 604  KKMHIMPSL--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            + +  +P     ++  I      S    ++  +   H +     +   LLYV  TRA   
Sbjct: 756  QLVWCVPQESPFNELDIVPVNYSSAMAESVYRNDYLHERLQLWVDNLNLLYVAFTRAGKN 815

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            LII       N                   +   +++     +   E      S +    
Sbjct: 816  LIIWSRKGQRNTMSELLAGALPQAACKLEQEWDEEQVYEFGDLCPSEDEKMVDSGNKLTR 875

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
             P +   +++ +  + +                     S         L    SD++  N
Sbjct: 876  KPEKLPVSMESMHPDIE------------------FRQSNRSADFIKGLSEEESDDRFIN 917

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
             G ++H L   I    +   ++ I         +   +  + +     +    P +    
Sbjct: 918  HGQLLHTLFSAIE--TKEDIESAIQKLV-FEGVIGSKETEEEIRTLTMKAFSLPEVQEWY 974

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
            S +    +     I    K ++ + R D++ +    + + ++K               + 
Sbjct: 975  SGEWK--LFNECAIIYKDKGVLQTRRPDRVMMKDGQVVVVDFKFGKEN--------KKYN 1024

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
             Q+  Y ++L      K++   L YV E ++  
Sbjct: 1025 KQVKGYMQLLSRM-GYKNITGYLWYVEE-EIIE 1055


>gi|27905008|ref|NP_778134.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|32129937|sp|Q89A21|REP_BUCBP RecName: Full=ATP-dependent DNA helicase rep
 gi|27904406|gb|AAO27239.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 670

 Score =  247 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 100/556 (17%), Positives = 181/556 (32%), Gaps = 125/556 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                Y    K + +LDF+DLI     LL+   +S   R + + +I ++L+DE QDT+ I
Sbjct: 163 RYYELYNAYLKSSNILDFDDLIFLPTILLRDNKLS---RERWNDKIKYLLVDEYQDTNFI 219

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I+ L+          S       VGD+ QSIYS+ GA        K          
Sbjct: 220 QYKLIKLLS----------SKRSNFTLVGDDDQSIYSWRGANIHNFESLKHDYPN----- 264

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I +  ++RS+  IL V + + S   +       S                V++ 
Sbjct: 265 ---LRTIIMQHNYRSSGRILKVANALISNNLHFFNKKLFSNL---------DYGSIVEII 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                + +                          AR I           T+  +      
Sbjct: 313 SAKNEEDE--------------------------ARVILQ---------TLMLHKSNYNA 337

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           Q KD  +L R      +           +KI               IKDL+A  R I++ 
Sbjct: 338 QYKDYAILYRSNYQVKIFEKFL----IKFKIPYKILANISFFSRPEIKDLIAYLRLIINP 393

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK------FANCGISKFQHV 484
           +D+ +F+ ++  PL       + K+    +   ++ +                +   Q  
Sbjct: 394 DDNAAFLRVVNRPLRGIGAVTLQKLKEWSKKRNQSFFMASLDIGLESILPVHNLKSLQEF 453

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-------------IDVLDE 531
           +  I   I      +P +    ++   K  +  +                      +++E
Sbjct: 454 VYLIQT-ISYQIQLNPIEVLEKLVATIKYEKWLMRSLKFSKLYVASIKNISIVLNWIINE 512

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                + +++     L ++ISE       +      N++ V++MT+H +KGLE   VF+V
Sbjct: 513 LKYKIMNSKKFVMKYLIDIISEFILQNS-LNEDIVINNDYVQLMTLHASKGLEFLYVFIV 571

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                V                                           ++  +E  RL 
Sbjct: 572 GVEEGVLP----------------------------------YYRNTTMENNIDEERRLA 597

Query: 652 YVGMTRASDQLIICKH 667
           YVG+TRA  +L +   
Sbjct: 598 YVGITRAQKKLFLSYA 613


>gi|254038990|ref|ZP_04873041.1| ATP-dependent DNA helicase Rep [Escherichia sp. 1_1_43]
 gi|226838681|gb|EEH70709.1| ATP-dependent DNA helicase Rep [Escherichia sp. 1_1_43]
 gi|309704217|emb|CBJ03564.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407]
 gi|323934169|gb|EGB30600.1| ATP-dependent DNA helicase Rep [Escherichia coli E1520]
          Length = 673

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKHLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|300904028|ref|ZP_07121910.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 84-1]
 gi|300403980|gb|EFJ87518.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 84-1]
          Length = 673

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKPPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|198284627|ref|YP_002220948.1| exodeoxyribonuclease V subunit beta [Acidithiobacillus ferrooxidans
            ATCC 53993]
 gi|218666658|ref|YP_002427300.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus ferrooxidans
            ATCC 23270]
 gi|198249148|gb|ACH84741.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus ferrooxidans
            ATCC 53993]
 gi|218518871|gb|ACK79457.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus ferrooxidans
            ATCC 23270]
          Length = 1198

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 135/971 (13%), Positives = 290/971 (29%), Gaps = 110/971 (11%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETG---------NPTILKKAQTLQQA 56
             L+         K  W   +   ++    +    +              + +    L+  
Sbjct: 225  ALAAPRRRLATLKAQWAAEHDAFAEWLSGLVNGPKADNPLNGNTLSAAIVSRALAALRDW 284

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
            +          L     L+    P+      +         E L     E   I  +F  
Sbjct: 285  ADRSDPLIPDELDKCQRLSASKLPE--YCKNKPPPVLHPAAETLDTLFRELETIAQQFTR 342

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                  T A    A ++NA     K ++  + F D       +L  +     +  ++ Q+
Sbjct: 343  LHGEIRTHA----AAWINARLSRLKAQSGQVSFADYQRRLARVLHDKTQGPALAARLRQK 398

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
                LIDE QDTS +Q+++   +          ++    L  +GD KQSIY+F GA+   
Sbjct: 399  YPAALIDEFQDTSALQYQIFDDIY-----HAADNNPDTLLLLIGDPKQSIYAFRGADIDS 453

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
             L+ +R+          +     L  ++RS+  +++ ++ +++  E+     + +     
Sbjct: 454  YLQARRL---------TEGRHYALGTNYRSSHALVSALNAIYTAAEH--DDPQGAFAYAA 502

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
              +        VQ                  ++    + L +       A + A  I  +
Sbjct: 503  PGADNPLPYQPVQAHGHQKVWRIHGKAAPALTFWGAGEKLNKGDYLERCAAQAAECIVGL 562

Query: 357  IG---TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            +              R ++AKDI +LVR R +   I    + L +    SV  +++  + 
Sbjct: 563  LDNPEAGFAQEGEITRRLEAKDIAILVRDRHEAASIR---QALHHRQLRSVFLSEQDSVY 619

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
                 ++L+     +   ED       L  PL       +        + ET +E   + 
Sbjct: 620  ASEEARELLLWLEAVAEPEDARRLRVALALPLLGQPLSALDAFH----QNETAWEAQLEQ 675

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                        +    L  +            +L   +G ++  +         L E L
Sbjct: 676  FQD----LSRQWRRQGVLAMLHHSIHQFGIAARLLTQPEGERRLTNLL------HLGELL 725

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKR---AHSANHNEVRIMTVHTAKGLESPVVFL 590
                       + ++ L   +               ++   +R++T+H AKGL+ P+VFL
Sbjct: 726  QQASATIDGPEALVRHLHQAIAAGSDQSDAHILRLESDAGLLRVVTIHAAKGLQYPLVFL 785

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                +   +  +             P   I   + +   +  S      +++  +E  RL
Sbjct: 786  PFIATCKAARAN-------------PFTVIHSAEGQPAIHWESGDTTAAERARLQEDLRL 832

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYV +TRA   L +   +  +        +    +  S      +  +    +    E +
Sbjct: 833  LYVALTRAEHALWLGLAAPKTAGTPIFAGSAIAHLLGSERTARDLATLLEDCARLSPEIV 892

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                    P    +           E     +    + +  +    L             
Sbjct: 893  VETLPDSIPTTLFVRPRNNAHNPPPEYTASFEKHWGVASFSHLVRELPADPAAPPTPRRA 952

Query: 771  ESLLS---DNQTFNRGLIIHKLLQVI-----FTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
            ++        Q  N G  +H  LQ +       + + +    +   CT+        E  
Sbjct: 953  QAGAPWHRYPQGMNAGTFLHDQLQRLAQNGFAQIGQDQFVEQLHKACTQAGLGDWVGETA 1012

Query: 823  NLLLSITRLLENPMMTTAMS-CDSYSEVSV-----------------SGKINCPKKDII- 863
              L +I      P+        D+ SE++                          +  + 
Sbjct: 1013 EWLQAIVHSPLAPLTAALCDLSDTLSEMAFWFPSDALRSDDLDRLCQQHIFPGADRPRLP 1072

Query: 864  -------ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIY 907
                   + G +D +       ++ +YK++    ++ ++             +  Q S+Y
Sbjct: 1073 QRVIHGMMRGFMDLVFEQGGRYYVLDYKSNVLGSEDADYHAKALRDATLGHRYELQSSLY 1132

Query: 908  EKILKDSYPNK 918
            +  L      +
Sbjct: 1133 QLALHRLLRQR 1143


>gi|194434624|ref|ZP_03066880.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1012]
 gi|194417143|gb|EDX33256.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1012]
          Length = 690

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 128 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 185

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 186 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 242

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 243 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 284

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 285 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 321

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 322 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 360

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 361 DYAILYRGNHQSRVFEKFL----MQNRIPYKISSGTSFFSRPEIKDLLAYLRVLTNPDDD 416

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 417 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 476

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 477 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 536

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 537 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 596

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 597 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 621

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 622 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 668


>gi|77165469|ref|YP_343994.1| UvrD/REP helicase [Nitrosococcus oceani ATCC 19707]
 gi|254433769|ref|ZP_05047277.1| UvrD/REP helicase subfamily [Nitrosococcus oceani AFC27]
 gi|76883783|gb|ABA58464.1| ATP-dependent DNA helicase Rep [Nitrosococcus oceani ATCC 19707]
 gi|207090102|gb|EDZ67373.1| UvrD/REP helicase subfamily [Nitrosococcus oceani AFC27]
          Length = 668

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 97/607 (15%), Positives = 202/607 (33%), Gaps = 118/607 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A  L A Y+   +    +DF+DLI     LL        I  +      ++L+DE QD
Sbjct: 162 AIAAQLYAAYDRRLRAYNAVDFDDLIGLPVHLLTT---RPEILSRWQNYFRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L                +  VGD+ QS+Y++ GA+P+ + + K    + 
Sbjct: 219 TNAAQYQLVKYLAGVRGA----------VTVVGDDDQSVYAWRGAQPENLHQLKEDFPQ- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I+L  ++RST  IL V +++ S   +                        
Sbjct: 268 -------LTVIKLEQNYRSTTRILRVANQLISSNPHVFEKR------------------- 301

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW  +                     +         A R+            +  +  
Sbjct: 302 --LWSALGEGDSI--------------RVLTCRDEHHEADRVVAE---------LMYHRF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           K     +D  +L R    +       R     + I  V +      +   +KD+MA  R 
Sbjct: 337 KYRTACRDYAILYRGNYQSRPFERALRA----HGIPYVLSGGTSFFERGEVKDIMAYLRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + +++DD +F+ +  +P        + K+        +++     +       +   + +
Sbjct: 393 LANEDDDNAFLRVANTPRRGIGAVTLEKLAGYAALRGQSLLVSGFELGLGEHLSGEALPR 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNF 535
            +   +++ +L    +   P      ++     R          R     +  ++E + +
Sbjct: 453 LRRFCEWVVDLADRGRRGDPIAVIKDLIADIDYRAWLDENCNDRRTAERRMANVEELVGW 512

Query: 536 TLRNEQNSY--SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             R  Q      +L +L++E+       +     + + V ++T+H AKGLE P VF+V  
Sbjct: 513 LERLYQRGDERRALGDLVAEISLQDILERTQEKKDRDAVNLLTLHAAKGLEFPYVFMVGM 572

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             ++  H+                                      ++ T EE  RL YV
Sbjct: 573 EEELLPHRTSV-----------------------------------EQGTLEEERRLAYV 597

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           G+TRA   L            ++        + +    D + ++  +     +       
Sbjct: 598 GITRAQRSLCFTMAEKRQQYGETILCEPSRFLSELPAADLQWEREGIPRDPAERMERGQV 657

Query: 714 WSTHHPE 720
              +  E
Sbjct: 658 HLANLRE 664


>gi|170694337|ref|ZP_02885491.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
 gi|170140760|gb|EDT08934.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
          Length = 701

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/628 (16%), Positives = 196/628 (31%), Gaps = 139/628 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AAIVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKQLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  +L R      +   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 350 RANFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDICAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           +  DD +F+  + +P        +  + +   +   +++E +       + +   I   +
Sbjct: 406 NANDDPAFIRAITTPRRGVGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSPRQIEPMR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLR 538
               ++  L   A+  +       ++ A          F           + EF+ +  R
Sbjct: 466 AFCDFMQRLTDRAEKDAAGTLLDELMDAIHYEAYLYDAFDERQAQAKWQNVLEFIEWLKR 525

Query: 539 ----------------------NEQNS-----YSSLQELISELEQYPPTIKRAHSANHNE 571
                                  +          +L  LI  +        R    + + 
Sbjct: 526 KGTKAEPGDPGSAGSANGEATGYDTADGLADTGKNLLGLIQTVALMSMLEGR--EEDPDA 583

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           VR+ TVH +KGLE P VFLV     +  H+       +                      
Sbjct: 584 VRLSTVHASKGLEYPHVFLVGVEEGIMPHRGGADDEPIDDG------------------- 624

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RL+YV +TRA   L +         +++        + +   +
Sbjct: 625 -----------RIEEERRLMYVAITRAQRSLHLNWCKKRKRARETVVCEPSRFIPEMLLD 673

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHP 719
           D      +      KD   + +     P
Sbjct: 674 DAPPPTPEEAPMSPKDRLASLKALLQKP 701


>gi|145347097|ref|XP_001418014.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578242|gb|ABO96307.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 657

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 98/568 (17%), Positives = 171/568 (30%), Gaps = 117/568 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE   ++    DF+DL+  T  +L   ++   +R   +   + +L+DE QDTS  Q+
Sbjct: 162 YDEYELGLRQANAFDFDDLLSATVAML---EMCPDVRSYYEHRWSQVLVDEFQDTSTTQY 218

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+IR L++             ++F VGD  Q+IY + GAE           + +     +
Sbjct: 219 ELIRKLSQ----------PQGSVFVVGDADQAIYGWRGAEVAN-------IRTQFDEDFK 261

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                 L  ++RSTA I+     V         L                  G   +   
Sbjct: 262 DVQTHMLTTNYRSTATIVEAAQAVIKESAFPSPLDLV-----------ANTPGGRDV--- 307

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                ++ + +     A  IA      +  D          ++ 
Sbjct: 308 ---------------------AIVEANDDREEAEFIALEARKSVKEDPD--------LRY 338

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R      ++            +               IKD++A  R + +  D
Sbjct: 339 SEIAVLYRTNSQARVLEEAF----IRAGVPHKVIGDTSFYGRKEIKDMIAYLRVVSNSAD 394

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQ-------RHETETVYEYIQKFANCGISKFQHVIK 486
            +S   ++ +P        I K+                             S      +
Sbjct: 395 TVSLNRIINTPTRGIGNSTIEKLSAWIDTLPKTDGTELLPSAEEMGLTTRARSAVLKFSQ 454

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQN--- 542
            + E    A+  +P +    I+           +  GNE    + E +N      Q+   
Sbjct: 455 LMAETREKAKSSTPGELLEAIIKCTGYDTLVQDADDGNERWAFVQELINLAKEPPQDIDE 514

Query: 543 ---SYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                  L+ L S LE                + V++MT+H +KGLE   VF+      +
Sbjct: 515 TIQDRVGLEALGSFLEGISLLTSAESKEEEGGDTVKLMTMHASKGLEFNSVFISGVEEGL 574

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                                                      +  Q+E  RL YVG+TR
Sbjct: 575 IPFVRNGDS----------------------------------EDDQDEEVRLFYVGITR 600

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMV 685
           A  +L++C         +S Q      +
Sbjct: 601 AKRKLMLCHARERRRFGQSAQPARRSFL 628


>gi|83589123|ref|YP_429132.1| UvrD/REP helicase [Moorella thermoacetica ATCC 39073]
 gi|83572037|gb|ABC18589.1| UvrD/REP helicase [Moorella thermoacetica ATCC 39073]
          Length = 1232

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 109/715 (15%), Positives = 197/715 (27%), Gaps = 116/715 (16%)

Query: 6    GLSLNESYE-LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
            G++  E                +V+D+             T       L Q+S T     
Sbjct: 577  GVAPGEIAAVTFTNKAAAEIRQRVADLLGDRDGMESLTVGTFHSICLDLLQSSLTGSPGA 636

Query: 65   RF--------SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                         +S  LT         I   +  +    +  L   Q     ++ R   
Sbjct: 637  DLQGKPVGTTDTPASPRLTVVDEADAREILAGVLAEKGTGRRGLPGLQRRISLLKSRGLL 696

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL--LKKRDVSAWIRYKID 174
                +         + +   Y+E      VLD++D+++   +L  L+     A   ++  
Sbjct: 697  PDSPEVPADL----RPIYRAYQERLAAYGVLDYDDILLKALELPALRPEGAPA---FQGP 749

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                H+L+DE QD + +Q+ +++  T D           + LF +GD  Q+IY F GA+ 
Sbjct: 750  VPFTHLLVDEFQDVNAVQYRLVKKWTGD----------GKNLFVIGDPDQAIYGFRGADY 799

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
            +   +                 +  L  ++RST  IL     V +       L   +   
Sbjct: 800  RFFGQLLEDFPA--------ARVFRLTRNYRSTPVILRAAAAVVAHNPG-GDLRAAAGGE 850

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            +   ++                   ++                   +       I   I 
Sbjct: 851  LAATTASTTSPAAGPGISGGGGLVATRPEGGPILHLEAPGETAAGIA-------IVREIG 903

Query: 355  NMIGTDTIF--------------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
             ++G  T+                 G        DI VL R                   
Sbjct: 904  RLVGGATMLQAHGQDGGTWREGPETGSDGAYGFSDIAVLCRTGHQL----KALEECFLKE 959

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED-DIFKICTQ 459
             +      R    +   +++ +A  R +++ EDD   +  L S      E+  I    T 
Sbjct: 960  GLPYRIVGRESFLEERPVREALAFCRCLVNPEDDFHLLKYLGSGSAGVGEEVAIQVRETA 1019

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                   +  I++ A     + Q+ I  +          SP +      G      +   
Sbjct: 1020 LKRGVPAWLVIRELA----GELQNFINSLEAYRAALDKQSPAELLARWAGEHGLLDEPS- 1074

Query: 520  RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---SANHNEVRIMT 576
                     +   L    R        L   +  +               A+   V +MT
Sbjct: 1075 ---------ISRLLRVAERF-----PDLSAFLRGVVLAGEADHERPGNNGASPEVVTLMT 1120

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H AKGLE P VF+      +   K    + + P                          
Sbjct: 1121 LHAAKGLEFPAVFIAGVEDGLLPLKEGPGVTLSP-------------------------- 1154

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                     E  RL YVGMTRA + L++                    + +   +
Sbjct: 1155 -----EEMAEERRLFYVGMTRARELLVLVSSRRRELRGTVVPAEPSPFLGEIPAD 1204


>gi|288926530|ref|ZP_06420448.1| putative UvrD/REP helicase domain protein [Prevotella buccae D17]
 gi|288336672|gb|EFC75040.1| putative UvrD/REP helicase domain protein [Prevotella buccae D17]
          Length = 1116

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 141/971 (14%), Positives = 288/971 (29%), Gaps = 109/971 (11%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
                     E      +  + L       +  +       G   +      LQ+    + 
Sbjct: 217  MRAIRKEAQERLAGQAERFFRLLADNGLSVEDFA-----NGASGVCGYFLKLQKGEYDET 271

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK---EKLKKSQDEFIKIRDR----F 114
                  LL    L    +P+K +  +E    +P      E L    +E  ++R +    +
Sbjct: 272  -----KLLGKRVLDAMESPEKWVKKKEAVPGNPAFDLVTEVLFDLLNETERLRPKAVRDY 326

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRY 171
             +  +    +  L L   +        ++        L+ +T  LL        S +I  
Sbjct: 327  KSADLTLRHINQLRLLGSIETKVRALNEEANRF----LLSDTQMLLHSLIDGSDSPFIFE 382

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            KI  ++ H++IDE QDT  +QW   + L E+        +       VGD KQSIY +  
Sbjct: 383  KIGTQLEHVMIDEFQDTGTVQWANFKVLLEECMSRDGAAN-----LIVGDVKQSIYRWRS 437

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             + + +   +R     A +A Q+ ++  L  ++RS  +I+   +  F      +      
Sbjct: 438  GDWRLLNDIEREF---APHAEQRLAVTSLCTNYRSERNIIAFNNAFFRTAAALEEADRQE 494

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            VQ W Q  +             ++  D L +             
Sbjct: 495  DNAEGAAQLAHAYADVVQQWPQGRAPRGRVEVELLPKSSTDDDMLDKTVETVDY------ 548

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                ++      +           I +LVR  +    I      +     I +V ++ F 
Sbjct: 549  ----LLRAGVATNK----------IAILVRSNRTIQDIADHF--MTVRPDIPLVSDEAFR 592

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCML---KSPLFNFSEDDIFKICTQRHETETVYE 468
            L    A+  ++   R+++++ED LS V ++   +  +   +  D   +   R        
Sbjct: 593  LDASAAVGMIINALRYLVNEEDYLSKVALVEAYQKQVVGTTLTDSELLVRDRAGKTGGDT 652

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
             + +     ++K     + +             D    +          + R   E    
Sbjct: 653  RLNEELPADLTKPDKRARLLA--------MPLFDLAERLFSLLG-----LKRLKGES-AY 698

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            +  F +      Q++ + +   + E +           A  N +R++T+H +KGLE   V
Sbjct: 699  VCAFFDRLTAYLQDNTTDITAFLEEWDANLHEKTIQSDAA-NGIRLLTIHKSKGLEFDNV 757

Query: 589  FLVDTGS--QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
             +       +  S   +  +      +  P +P+       + +I      H       +
Sbjct: 758  VMPFCDWTLERTSGNTVWCVPSEEPYSRLPLVPVDFSAKGMKGSIYEADYHHEHLQNIVD 817

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
               LLYV  TRA   L +     T+N +          +  S   +              
Sbjct: 818  NLNLLYVAFTRAGRNLFVFGKRGTANSRSYLIEQCLAQMAGSEGFETADYHEGADEKTES 877

Query: 707  DEWIAYEWSTHHPENTPLE--------------------REETIKQLMDEQKIPKKLFSP 746
              +   E S   P  +P                       +E +    +          P
Sbjct: 878  VGFAFGELSVEKPTVSPTAGTAAGAENGGDTALSEVSESEKEPVSSQPNVFIRRPMPLRP 937

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                         S          E         N G I+H+L   I         + + 
Sbjct: 938  DIETFESHAEFKQSNKSRDFVGGDEEEEKRRSYINTGNILHRLFSNI--RTATDIDDAVR 995

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI--NCPKKDIII 864
                +          ++L   I + LE   +    S     ++     I     +   + 
Sbjct: 996  ELEQEGVLYDEELTAESLRRMIHKRLETEQVADWFS--GRWQLFNECTILQLNRETGKVE 1053

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
              R D++    +   + ++K   H           +  Q+  Y ++L+    ++ +   L
Sbjct: 1054 EHRPDRVMTDGRQTIVVDFKFGTH--------RDEYHRQVRQYMELLRQM-GHRQVEGYL 1104

Query: 925  IYVSEPKVFII 935
             YV +  +  +
Sbjct: 1105 WYVYKNDIERV 1115


>gi|157960189|ref|YP_001500223.1| ATP-dependent DNA helicase Rep [Shewanella pealeana ATCC 700345]
 gi|157845189|gb|ABV85688.1| ATP-dependent DNA helicase Rep [Shewanella pealeana ATCC 700345]
          Length = 671

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/560 (16%), Positives = 189/560 (33%), Gaps = 120/560 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   L   Y +  K    LDF+DLI+    LL++ +    +R +    I ++L+DE QD
Sbjct: 162 QLFALLYQRYAQHMKAYNALDFDDLILLPTLLLRQNEE---VRTRWQTRIQYMLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L  +                VGD+ QSIYS+ GA+P+ ++   +   + 
Sbjct: 219 TNTSQYEMVKLLVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPR- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +    +  S                
Sbjct: 268 -------LKLIKLEQNYRSSQRILRAANILIANNPHVYEKALFS---------------- 304

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                             + ++      L   +      R +A  I           +  
Sbjct: 305 ------------------ELAYGEPIRVLIAANEEQEAERVVAEMIR----------HKF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  +L R    + L+           +I    +          IKD+MA  R 
Sbjct: 337 VGRTSYGDYAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFGRAEIKDIMAYLRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISK 480
           +++ +DD +F+ ++  P        + ++      +  +++          +     +S 
Sbjct: 393 VVNPDDDNAFLRIVNLPKRGIGPATLERLGNFANKKQISMFAAIFEADLNHELPPAAMSS 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNF 535
                +++ E+   A+   P +    ++               ++     +  + E   +
Sbjct: 453 LYQFGRFVVEMGDCAERGDPVEAVKQLIRKINYEDYLYETSTSAKAAEMRMKNISELYRW 512

Query: 536 TLRNEQ----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                Q    +   +L E+++ L       +       ++V++MT+H +KGLE P VF+V
Sbjct: 513 VTEMLQGDDLDEGMTLPEVVTRLTLRDMMERNNEDEGGDQVQLMTLHASKGLEFPYVFMV 572

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H+                                       +   +E  RL 
Sbjct: 573 GAEERILPHQSSID-----------------------------------EDNVDEERRLA 597

Query: 652 YVGMTRASDQLIICKHSNTS 671
           YVG+TRA  +L         
Sbjct: 598 YVGITRAQRELWFVICRERR 617


>gi|107100131|ref|ZP_01364049.1| hypothetical protein PaerPA_01001152 [Pseudomonas aeruginosa PACS2]
          Length = 1245

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 134/1055 (12%), Positives = 295/1055 (27%), Gaps = 140/1055 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-----QTQ 60
             LS  ES   + +      Y Q+  ++     +       +    + L+        + +
Sbjct: 219  ALSAPESLTALLEQ-GGDWYRQLDQLDAQARAAWRATRVELEALLRDLRPYLNGNSYRGK 277

Query: 61   CIEERFSLLSSFFLT-QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK--IRDRFNTY 117
              +E F           +   Q   + +    +     +++                   
Sbjct: 278  DSDETFDAWLQALADWSEGGEQPANLGKFGQTRIKLTAKRVAPEHAALRAIDAWAAHQEE 337

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +   +    L     +    E  K++   + F+DL+   +  L+       +   I ++ 
Sbjct: 338  RPDLAPHLLLHALGEVGHELEIEKQRRAEIGFDDLLSRLDRALQGPG-GERLAQLIREQF 396

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               LIDE QDT  +Q+ +   +           +    LF +GD KQ+IY+F GA+    
Sbjct: 397  PVALIDEFQDTDPVQYRIFERIYRIAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTY 456

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            LR +            +     L  +FRSTA ++   ++ F+  E     +         
Sbjct: 457  LRAREA---------TRGRHYTLGKNFRSTAAMVAAANRCFAFAEEHPRGAFRFAREGLE 507

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                   V      E+++            +       L   +    +A R A  I   +
Sbjct: 508  NPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLDVEAGVLGSAAYRQEMAERSASAIRRWL 567

Query: 358  ------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                          G  R ++  DI +LVR R +      +   L      SV  +DR  
Sbjct: 568  SLADLGRAGFADEQGGWRALRPADIAILVRGRAEA---EAIRSALAARRLASVYLSDRDS 624

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D     DL+   R       D      L +   +     + ++           E   
Sbjct: 625  VFDSQEAADLLHWLRACADPGADALLRVALATRSLHLDWATLERLNQD--------ELFW 676

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            +        ++   +    L  + +  +  +    +L    G +   +         L E
Sbjct: 677  ERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLLRHADGERSLTNLL------HLAE 730

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            +L          ++ ++ L  +++           ++ + ++++T+H +KGLE P+V L 
Sbjct: 731  WLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHKSKGLEYPLVLLP 790

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               S      +               +     +        +   +        E  RLL
Sbjct: 791  FICSWRELDGNSGAPASFHEDGAAGRVIELARRK----EQAARAYEQANDERLGEDMRLL 846

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-----------------VYDSFHNDER 694
            YV +TRA   + +      ++  KS +     +                    +   + R
Sbjct: 847  YVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCLAALRGECR 906

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               ++     + + ++A                     +     +  +  + + +D    
Sbjct: 907  EIVVEPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQLQASAGLDDDEALE 966

Query: 755  YILNPSTIDTKGKTNLESLLS------------------DNQTFNRGLIIHKLLQV---- 792
               +   I  +  T  E   S                    +    G  +H LL+     
Sbjct: 967  SDESQEPISAEEATFHEEGRSAEQPPVAHASEMRDDLHRFPRGPAPGTFLHGLLEWAGRE 1026

Query: 793  ---IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLENPMMT---------- 838
               +      +R+  +   C        A+     L       L  P             
Sbjct: 1027 GFDVARADAQRRRELVARRCDLRGWKDWAEPLDLWLEQYLAEPLRWPGGETSLAGLVAYQ 1086

Query: 839  -----TAMSCDSYSEV------------SVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
                    +    +E             +    +     + +  G +D +   Q   ++ 
Sbjct: 1087 VEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNGMFKGFVDLVFEHQGRFYVA 1146

Query: 882  EYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDS---------YPNKSLVCL 923
            +YK++     +  + P           +  Q  +Y   L            Y       +
Sbjct: 1147 DYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALHRQLKARLPDYDYDRHMGGAV 1206

Query: 924  LIYVSEPKV------FIIPQNKLNKAFAEISTKIP 952
             +++   +       F  P  +L +    + +  P
Sbjct: 1207 YLFLRGARAATQGLHFERPPRELIERLDALFSGQP 1241


>gi|320330698|gb|EFW86674.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
            glycinea str. race 4]
          Length = 1230

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 125/1004 (12%), Positives = 277/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +     E          LT +   +        +           ++  +    
Sbjct: 272  EKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAF--------EAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324  LDSLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HSAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEGNDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA   A
Sbjct: 485  FLFRDDQGNQVPFSDALAQGRKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLAASCA 544

Query: 351  YTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++             +   R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFAMLDKPLRGLRPADIAILVRDGKEAQAVRQQLSA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFVAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWEQRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +  +                    LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADGNSQISLQPT----------EALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      SN       +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNASNSMLHRSALGYLLGGGVLLAESAEL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKNDI- 751
                +D     +     P   P +   +  +             +       +       
Sbjct: 877  KVWLRDLAQGCDAIALQPVPEPTDERFSAPRNEAALVKLLVPKRRAAENWWIASYSALRI 936

Query: 752  -------NEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTTGADESPDSPQAQKLFDDERLDPEAPRDISTSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  -------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                   +        ++ +   C++           + L  +  + L          + 
Sbjct: 997  AGNEGFALTAHTPELLRDAVARRCSRRGWAGWIDTLSDWLQHMLNMPLRLSPDATPVALD 1056

Query: 839  TAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQIS 872
                 + Y  E+     S  +N  + D ++                       G ID   
Sbjct: 1057 ELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +  +         +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGTDDTAYTELAMETAILDNRYDLQYVLYLLALHRQLKARMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F+ P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSVSQGAYFVRPPRELIESLDLLFQGKP 1220


>gi|260222507|emb|CBA32139.1| ATP-dependent DNA helicase rep [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 709

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 100/600 (16%), Positives = 181/600 (30%), Gaps = 104/600 (17%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +     A YEE       +DF+DLI     LL+       +R +    + H+L+DE QD
Sbjct: 164 RIIATAMARYEERLVAYQSVDFDDLISLPLKLLRDYP---QVRERWQALLGHVLVDEYQD 220

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+EV++ L  +               AVGD+ QSIY + GA    + +        
Sbjct: 221 TNATQYEVLKYLVGE----------KARFTAVGDDDQSIYGWRGATLDNLKKLPVDFPT- 269

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST+ IL   + V                              
Sbjct: 270 -------LKVIKLEQNYRSTSAILRAANNVIGPNPK------------------------ 298

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             L+ + +     +  P +              +    A R    I ++ G     + GK
Sbjct: 299 --LFPKTLFSELGEGEPVRIV---------DADNEEHEAERAVARIQSLRGNGVPDAQGK 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +   + +D  VL R            R       I    +      D   I+DL A  R 
Sbjct: 348 QYK-EFRDFAVLYRANHQAKPFEKALR----KAGIPYKVSGGQSFFDRAEIRDLCAWFRL 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-------CTQRHETETVYEYIQKFANCGISK 480
             + +DD +F+  + +P        +  +            E+          +   +  
Sbjct: 403 WSNNDDDPAFLRAVTTPKRGIGHTTLGTLGTFATQYKLSLFESLFSSSLASVLSAKALGS 462

Query: 481 FQHVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNEVID-----VLDE 531
                +YI++L   A+     +    F    L      +       +E +       + E
Sbjct: 463 LHEFGRYINDLEFRARHTEGAEAAMAFIMDWLKEIGYEKHLYDGEDSEGVASAKWSNVME 522

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTI----------KRAHSANHNEVRIMTVHTAK 581
           F  +  +           + +  E                      + N V + T+H +K
Sbjct: 523 FCEWMAQRCGGQIDDAAGVTNTREVKNLLEVSQTIALLSTISEREKDQNVVTLSTLHASK 582

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE P V LV     +   K       +     +                  +       
Sbjct: 583 GLEWPHVMLVGVTEGMLPFKLGDGADPLGGSTLEH-----------------ESANDDIA 625

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           +  +E  RL+YVG+TRA   L +         ++         + +   +    K+    
Sbjct: 626 ARLQEERRLMYVGITRAQRSLAVSWTRRRKKGREMVAALPSRFIAEMGLDQSTAKEDPRE 685


>gi|291514124|emb|CBK63334.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Alistipes shahii WAL
            8301]
          Length = 1042

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 145/897 (16%), Positives = 277/897 (30%), Gaps = 130/897 (14%)

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
            L+      K +  +        + E L+KS       R       +         LA   
Sbjct: 241  LSTVGNLPKKLQNKPFAPGYVQVCETLEKSLRHVSHGR------LLKDYVERIFRLAADW 294

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
               Y + K++N ++DF D+   +  LL   +V+  IR         +L+DE QD S I+ 
Sbjct: 295  RRDYADYKRRNRLIDFNDMERYSVQLLDLEEVARDIRKST----RLVLVDEFQDCSPIEI 350

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +   L+E                 VGD KQSIY F G+  + +    +   + A     
Sbjct: 351  RLFDRLSEIVEES----------VWVGDTKQSIYGFRGSNAEMIETVTQQFSEDAAQPNA 400

Query: 254  KFS-IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                   LP S+RS   ++   + VF+                          G     E
Sbjct: 401  AGCFRTSLPKSYRSREKLVRAANAVFTPIF-----------------------GPAAALE 437

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                +   +  P  E W    D              +A  +  +I             + 
Sbjct: 438  PHHGEEGVESVPPLELWQVGGDFFEG----------VADGVEALIRLG----------VA 477

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              DI +L R+      +    R    +  I V   +   + D+L ++ L+AL  + +  +
Sbjct: 478  PGDIAILARRNDQVDALAGSLR----NRGIPVATAE-TAIGDYLEVQLLVALLNYAVLHD 532

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH---VIKYIH 489
            D              FS+  I  +       E +   +   A+ G S++     + + I 
Sbjct: 533  D--------------FSKAAILALLADCPVDELLERRLDYLADPGDSRWLEEDDLFRKID 578

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE----QN 542
             +I   +  S   F   ++       +     G E       LD  L      E    Q 
Sbjct: 579  RVIDRNRQQSISGFVESLIVELDFENRINRWSGPEAARRRAHLDSVLALAADYETQAAQT 638

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG----SQVF 598
              +SL      LEQ   T +     +   V +++ H +KGLE   V L         ++F
Sbjct: 639  GGASLGGFARCLEQGQMTER-PFEKDPWAVSVLSYHKSKGLEWKHVILTGLERDYRKRLF 697

Query: 599  SHKHIKKMHIMPSLNDDPGIPI------------WIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +    +      + +D                   +P+            +   +    E
Sbjct: 698  AQDLFEVQLHRAADSDGGDARRLISLFPNLFGASSVPRCLEDQLRELLHYEAADRRVGRE 757

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RLLYVG TRA DQLI  +   ++    +  ++   ++      +ER+          +
Sbjct: 758  EARLLYVGFTRARDQLIAVQPLKSARNGTTTPQSLEWLIQVGAATNERMWHAWNEPIPIR 817

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                A    T     T          +   +    +      +   +P +   +    + 
Sbjct: 818  PFVGAAASRTAVEPPTAERYLRPEPPVQTPELRYLQPSQLAADPNRKPEVTLVADRGARI 877

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE--HKRKNFITSYCTKNAKLWPAKEYKNL 824
            +    +          G  +H +L +     E    R   I         +   ++   +
Sbjct: 878  ELRAGAETPM---AEIGTTLHNILALCSPGSENVTGRARQILGRHGMETVVPHPEQIGAM 934

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
               +   LE        +   + E  +            ++G ID +  +     + ++K
Sbjct: 935  AEWLFGWLEREYG---PARKIWHERPIRMW----CNGQELNGSIDLVWETDHGCVVVDFK 987

Query: 885  T-----HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI-YVSEPKVFII 935
            +             EH    +  QL+ Y ++L+ +   + +   L+ YV +  +  +
Sbjct: 988  SFPGTREAVTNPSGEHFAGRYAPQLTAYRRVLEAA--GEQVRDTLVCYVVQGCLVRV 1042


>gi|218754981|ref|ZP_03533777.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
 gi|289763384|ref|ZP_06522762.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
 gi|289710890|gb|EFD74906.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503]
          Length = 1101

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 129/960 (13%), Positives = 254/960 (26%), Gaps = 175/960 (18%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
              +  +         +    +   L +            L     E      V+DF   +
Sbjct: 195  ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 254

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
             +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 255  ASAARLAATSP---QVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 305

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              L AVGD  QSIY + GA    + R          + G    ++EL  S+R+    L V
Sbjct: 306  LALTAVGDPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPVLELLTSWRNPPQALRV 362

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             + + +           S      R       G V+                        
Sbjct: 363  ANGISAEARRR------SVAVRALRPRPDAPPGAVRCALL-------------------- 396

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                 ++    +A  +                     ++     VLVR+  D   I    
Sbjct: 397  --PDVQAEREWIADHLRMRYQRAEADG----------VKPPTAAVLVRRNADAAAIADTL 444

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I         L     + +++A+ R +       + + +L  P +     D+
Sbjct: 445  RA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 500

Query: 454  FKICT-----------------------QRHETETVYEYIQK------FANCGISKFQHV 484
              +                            +   + + I        ++  G  +   +
Sbjct: 501  AALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGAL 560

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRN- 539
               +  L       S  D    +        +  +      G    + LD F +      
Sbjct: 561  AGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYA 619

Query: 540  ----EQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLV 591
                 ++S +S+  L++ L+              +   + V+++TVH AKGLE       
Sbjct: 620  ERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEMAGGGGA 679

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN--- 648
                 VF     +   +       P +      + +    V D      +    +     
Sbjct: 680  HLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEH 739

Query: 649  -------------RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--------------- 680
                         RLLYV +TRA D L++  H       K    +               
Sbjct: 740  RRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAA 799

Query: 681  ---WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  +V          ++  L ++  +  W A   +    +              D  
Sbjct: 800  AGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLP 859

Query: 738  KIPKKLFSPIKN-------DINEPYILNPSTIDTKGKTNLE---------SLLSDNQTFN 781
                 +  P +        D++                 L           L+ D     
Sbjct: 860  GSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGAR 919

Query: 782  RGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--- 836
            +     +L+  +   P+      +   ++  +        +  +L  +  R + +P    
Sbjct: 920  Q-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELA 974

Query: 837  -MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQ 891
             +  A +  S++     +V      P  D ++ GRID + +       + ++KT      
Sbjct: 975  ALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRIDAVFVDPDGGATVVDWKTGKPPHG 1034

Query: 892  EIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                       QL++Y          P  S+     YV      +  +       A + T
Sbjct: 1035 PAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFYYVRSGITVVPDELPAPGELAMLLT 1092


>gi|30064927|ref|NP_839098.1| ATP-dependent DNA helicase Rep [Shigella flexneri 2a str. 2457T]
 gi|56480432|ref|NP_709581.2| ATP-dependent DNA helicase Rep [Shigella flexneri 2a str. 301]
 gi|30043188|gb|AAP18909.1| rep helicase [Shigella flexneri 2a str. 2457T]
 gi|56383983|gb|AAN45288.2| rep helicase [Shigella flexneri 2a str. 301]
 gi|313647777|gb|EFS12224.1| ATP-dependent DNA helicase Rep [Shigella flexneri 2a str. 2457T]
          Length = 673

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNYQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSTKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|300114405|ref|YP_003760980.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
 gi|299540342|gb|ADJ28659.1| UvrD/REP helicase [Nitrosococcus watsonii C-113]
          Length = 667

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/607 (16%), Positives = 204/607 (33%), Gaps = 118/607 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           T+A  L A YE   +    +DF+DLI     LL    +   I  +  + + ++L+DE QD
Sbjct: 162 TIAAQLYAAYERRLRTYHAVDFDDLIGLPVHLLT---MRPEILSRWQKHVRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L                +  VGD+ QS+Y++ GA P+ + + K    + 
Sbjct: 219 TNAAQYQLVKLLAGVRGA----------VTVVGDDDQSVYAWRGARPENLHQLKEDFPQ- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++I+L  ++RST  IL V +++ S   +                        
Sbjct: 268 -------LTVIKLEQNYRSTTRILRVANQLISSNPHVFEKR------------------- 301

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW  +                S  D           A R+            +  +  
Sbjct: 302 --LWSAL-------GEGDPIRVLSCRD-------EHHEADRVVAE---------LMYHRF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           K     +D  +L R    +       R     + I    +      +   +KD+MA  R 
Sbjct: 337 KYRTACRDYAILYRGNYQSRPFERALRA----HGIPYALSGGTSFFERGEVKDIMAYLRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + +++DD +F+ +  +P        + K+        +++     +       ++  + +
Sbjct: 393 LANEDDDNAFLRVANTPRRGIGAVTLEKLAGYAALRGQSLLASGFELGLGGHLSSEALPR 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNF 535
            +   +++ +L    +   P      ++     R          R     +  ++E + +
Sbjct: 453 LRRFCEWVVDLADRGRRGDPVAVIRDLIADIDYRAWLNENCHDRRTAERRMANVEELVGW 512

Query: 536 TLRNEQNSY--SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             R  Q      +L +L++E+       +     + + V ++T+H AKGLE P VF+V  
Sbjct: 513 LERLYQRGDERRTLGDLVAEISLQDILERTQEKKDRDAVNLLTLHAAKGLEFPYVFMVGM 572

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             ++  H+                                      ++   EE  RL YV
Sbjct: 573 EEELLPHRTSV-----------------------------------EQGALEEERRLAYV 597

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           G+TRA   L            ++        + +    D + ++        +       
Sbjct: 598 GITRAQRSLCFTMAEKRQQYGETVLCEPSRFLSELPAADLQWEREGTPRDPVERMERGQV 657

Query: 714 WSTHHPE 720
              +  E
Sbjct: 658 HLANLRE 664


>gi|283954666|ref|ZP_06372184.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793858|gb|EFC32609.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 644

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 103/543 (18%), Positives = 190/543 (34%), Gaps = 124/543 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ +Q
Sbjct: 175 YYRAYEEYLLKQNFVDFDDLLLLSNLILESDINFAKEQSLL---YNYITVDEYQDTNTLQ 231

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +       
Sbjct: 232 YKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN------ 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +++L  ++RS   IL   + + S  E   G +                   +++ +
Sbjct: 276 --VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLI---------CTKDAGENIKILK 324

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
               + +  C                          +A  +  ++ +           ++
Sbjct: 325 NKSEKDEGLC--------------------------VAQEVKKLLNSG----------VE 348

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           AK+I +L R    +  I       K    IS          + L IKDL++  R IL+  
Sbjct: 349 AKEIAILFRVNALSRAIEEAFMKEK----ISYKLLSGMRFYERLEIKDLISYLRLILNPN 404

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKFQH 483
           DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++   
Sbjct: 405 DDLSFRRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGIGILTTKKAQNEANI 464

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
            I+ IH L          D    +   K    +     G+E I  LDEF        +  
Sbjct: 465 FIQNIHTLKSYDSAKKVFDNIEELFKIKDYFSE--QDDGDERIGNLDEFYANLREKLKED 522

Query: 544 Y-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
             +SL++L+SE+                 V +M++H +KGLE   VF++      F   +
Sbjct: 523 PQASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFPLNN 578

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YV +TR    L
Sbjct: 579 G--------------------------------------ENLEEERRLAYVAITRTKKFL 600

Query: 663 IIC 665
            I 
Sbjct: 601 TIS 603


>gi|162449161|ref|YP_001611528.1| ATP-depentend DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161159743|emb|CAN91048.1| ATP-depentend DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 820

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 103/729 (14%), Positives = 212/729 (29%), Gaps = 143/729 (19%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           ++        +        F+               YE   K    +DF+DL++    + 
Sbjct: 155 RQVLSRIHAEKQEGRGPAEFERKGYFDDAIARCFEAYERHLKAASAVDFDDLLLAVLRIA 214

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +    +++    +     H+L+DE QD + +Q+ ++R+  +          S   L  VG
Sbjct: 215 EDP--TSYAGEDLRGRFRHVLVDEFQDVNQVQYRLVRAFCK----------SHDNLCVVG 262

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY + GA+ + V   +R             ++++L  ++RS   ++     V   
Sbjct: 263 DDDQSIYRWRGADVRIVRGFRRDFPH--------ATVVKLEQNYRSIGHVVRGALGVIRH 314

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             + +                       +LW        +  +       +         
Sbjct: 315 ASDREPK---------------------ELW-------TANQDGAPIDVVAA-------D 339

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           S    A  +   +  +I             +   +I V  R    + ++  + R      
Sbjct: 340 SEHDEAAWVVECVRELIAEG----------VSPNEIAVFYRIHAQSRVLEEVLRE----A 385

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
           +I           +   +K+L++  R I + + D+    ++  P     +  + K+    
Sbjct: 386 RIPYQIIGGTRFFERAEVKNLLSYLRVIANPKSDVDLNRIINVPARKIGQSTVDKLIQAA 445

Query: 461 H-ETETVYEYIQ------------------KFANCGISKFQHVIKYIHELIHIAQFCSPH 501
                +++E I                     A+            IH L+  A+  SP 
Sbjct: 446 DLLGVSLFEAIDPLLEGRVPPSAMPGGQLPPLASAAKRSLLGFRDLIHGLMTEAKSASPS 505

Query: 502 DFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYS--SLQELISELEQ 556
                +L      +        E       L E +   +  EQ + +      L   LE+
Sbjct: 506 ALAEEVLARSGYAKALEQEDSVESEARLQNLRELVQSLVDYEQEATAAGDEATLAGYLER 565

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                     A+  +V +MT+H AKGLE   VFL      +F  +               
Sbjct: 566 VSLVSDVDALADVPKVAMMTIHAAKGLEFHAVFLTGMEEDLFPFRS-------------- 611

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                  +K   EE  RL YV +TRA ++L I   +  +   ++
Sbjct: 612 -------------------QDPNRKGDIEEERRLAYVAITRARERLWITHAARRAIFGQT 652

Query: 677 NQRTWYDMVY----------------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                   +                  +    E         +     +   E S    E
Sbjct: 653 RYGLPSRFLADLPPASVRPIATPASMMAQRRVEGGFGGGGGYAAPGLRFGGQERSWEGRE 712

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             P  + +         +  +     +   ++ P          +   +  +   +    
Sbjct: 713 RRPGAQADERFAGARFSREGEPARGAMARGMDVPDRAPGERYVEREAVDPGAEGGEGLAL 772

Query: 781 NRG-LIIHK 788
            RG  + H+
Sbjct: 773 RRGMRVYHE 781


>gi|324007448|gb|EGB76667.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 57-2]
          Length = 673

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 209/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    +          K       +  +  
Sbjct: 111 TDQVALLKELTDGLIEDDKLILQQLISTISNWKNDLMTPVQAAASAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------KRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|295095198|emb|CBK84288.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 674

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/668 (14%), Positives = 213/668 (31%), Gaps = 121/668 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    +          K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLMTPAQAAASAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSKDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      + K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTEYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +   +        +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        ++++               G         +
Sbjct: 400 SAFLRIVNTPKREIGSATLQKLGEWAMTRNKSLFTASFDMGLSQTLTGRGYDALTRFTHW 459

Query: 488 IHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +A+        D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEVQRLAEREPVAAVRDLIHGIDYESWLYETSASPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V+LV     +  
Sbjct: 520 EIDEPMTLTQVVTRFTLRDMMERGESEEEADQVQLMTLHASKGLEFPYVYLVGMEEGLLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   +  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVITAEERMHKGQANVANIR 664

Query: 720 ENTPLERE 727
                 +E
Sbjct: 665 AMLAKAKE 672


>gi|237716370|ref|ZP_04546851.1| ATP-dependent helicase [Bacteroides sp. D1]
 gi|262407972|ref|ZP_06084520.1| ATP-dependent helicase [Bacteroides sp. 2_1_22]
 gi|294644255|ref|ZP_06722024.1| UvrD/REP helicase [Bacteroides ovatus SD CC 2a]
 gi|294807965|ref|ZP_06766744.1| UvrD/REP helicase [Bacteroides xylanisolvens SD CC 1b]
 gi|229444017|gb|EEO49808.1| ATP-dependent helicase [Bacteroides sp. D1]
 gi|262354780|gb|EEZ03872.1| ATP-dependent helicase [Bacteroides sp. 2_1_22]
 gi|292640419|gb|EFF58668.1| UvrD/REP helicase [Bacteroides ovatus SD CC 2a]
 gi|294444849|gb|EFG13537.1| UvrD/REP helicase [Bacteroides xylanisolvens SD CC 1b]
          Length = 1056

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 133/864 (15%), Positives = 265/864 (30%), Gaps = 108/864 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            KN  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KNWATKTSPRYADIINLANSSLIQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +    N       L+ +TN LL +      S+++  KI   I++++IDE QDTS +
Sbjct: 345  EKVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIHNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +       +      
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNSLNDHIEHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +++   +++F+   N                 +      V   
Sbjct: 451  --PIRVKTLATNRRSETNVIRFNNRIFTAAANYLNGVYKQQLGKDCEDLQKAYADVV--- 505

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                 Q   +   +     S+ +   +          +   + N++ +           +
Sbjct: 506  -----QESPRSTEKGYVKVSFLEPDEEHDYTEQTLISLGAEVENLLASG----------V 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            Q  DI +LVRK K  P I         +    VV ++ F L   LAI  ++   RF+  +
Sbjct: 551  QLNDIAILVRKNKSIPRIADYF---DKELHYKVVSDEAFRLDASLAICMMLDALRFLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  ++ I EL
Sbjct: 608  NNKIA-------------RAQLAIAYQNEVLQKGLDWNTLLLLPAENYLPAAFLEKIKEL 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      +    L  F +      Q++ S L   I
Sbjct: 655  R----LMPLYELLEELFSI------FEMNLIKDQDAYLFAFFDAVTDYLQSNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                +   +           +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RYWNETLCSKTIPSGEVEG-IRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCTPQ 763

Query: 612  --LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                D   I      ++   +I  +     +     +   LLYV  TRA   LII    N
Sbjct: 764  AAPFDALDILPINYSTQMAESIYGNDYLQERLQLWVDNLNLLYVAFTRAGKNLIIWSRKN 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      D      +                    +  P E+E T
Sbjct: 824  QKGTMSELLANTLPIVAKEEGIDWEEDCYE------------------QGQLCPSEKERT 865

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                    + P+KL   +   +        S         +E   SD++  NRG ++H L
Sbjct: 866  KTSTNKLTQKPEKLPIRM-ESMRHDIEFRQSNRSADFIQGIEEEDSDDRFINRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSE 848
              VI           I         +    E + +   +  +   +P +    S   ++ 
Sbjct: 925  FSVIE--TAEDIDPAIERLI--FEGVIRNDEKEKVAREVATKAFSSPEIQDWYS-GKWT- 978

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            +     I   +K ++ + R D++ +    + + ++K     P         +  Q+  Y 
Sbjct: 979  LFNECAIIYKEKGVLQTRRPDRVMMKDNQVVVVDFKFGKENP--------KYNKQVKGYM 1030

Query: 909  KILKDSYPNKSLVCLLIYVSEPKV 932
            ++L      K++   L YV E K+
Sbjct: 1031 QLLTKM-GYKNITGYLWYVDEEKI 1053


>gi|120600524|ref|YP_965098.1| ATP-dependent DNA helicase Rep [Shewanella sp. W3-18-1]
 gi|120560617|gb|ABM26544.1| ATP-dependent DNA helicase Rep [Shewanella sp. W3-18-1]
          Length = 670

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 111/674 (16%), Positives = 223/674 (33%), Gaps = 137/674 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E I + +      +   I+ + +L +E        K   L+        ++  +
Sbjct: 59  AAREMKERIAQSMGR-KEARGLWISTFHTLGLEI--IKREHKVLGLKPGFSLFDDQDTLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL    LTQ    +   + + +     + K  L   +      +D               
Sbjct: 116 LLKE--LTQDELDEDKDLLKSLASTISNWKGGLIIPEQACKIAQDEQQ------------ 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   L   Y +  K    LDF+DLI+    LL+  +    +R +   +I ++L+DE QD
Sbjct: 162 HLFAMLYQRYAQHMKAYNALDFDDLILLPTLLLRHNEE---VRTRWQTKIQYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L  +                VGD+ QSIYS+ GA+P+ ++       K 
Sbjct: 219 TNTSQYEMVKLLVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGTDFPK- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +    +  S           G+   
Sbjct: 268 -------LKLIKLEQNYRSSQRILRAANILIANNPHVYDKALFSE-------LAYGEPLR 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V                               ++    A R+   I           +  
Sbjct: 314 VLF----------------------------AANEEQEAERVVAEIVR---------HKF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q  D  +L R    + L+           +I    +          IKD+M   + 
Sbjct: 337 VGRTQFGDYAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFARAEIKDIMGYLKL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SK 480
           +++ +DD +F+ ++  P        + ++      +  +++  I +            S 
Sbjct: 393 VVNPDDDNAFLRIVNLPKRGIGPSTLERLGHFANEKHISMFAAIFEPELNHHLPPAAMSS 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNF 535
                ++I E    AQ   P +    ++               ++     +  + E   +
Sbjct: 453 LYQFGRFIVETGDQAQRGEPVEAVKQLIRKINYEDYLYETSTSAKAAEMRMKNISELYRW 512

Query: 536 TLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                   E +   +L ++++ L       + +     ++V++MT+H +KGLE P VF+V
Sbjct: 513 VTEMLAGDELDEPMTLPDVVNRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPYVFMV 572

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H+                                       +   +E  RL 
Sbjct: 573 GVEERILPHQTSID-----------------------------------EDNIDEERRLA 597

Query: 652 YVGMTRASDQLIIC 665
           YVG+TRA  +L   
Sbjct: 598 YVGITRAQRELWFT 611


>gi|16762217|ref|NP_457834.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143706|ref|NP_807048.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213051683|ref|ZP_03344561.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213621483|ref|ZP_03374266.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213648366|ref|ZP_03378419.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|25290776|pir||AI0922 ATP-dependent DNA helicase [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504521|emb|CAD09403.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139341|gb|AAO70908.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 674

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 102/670 (15%), Positives = 214/670 (31%), Gaps = 121/670 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE   V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFLYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIEEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 664

Query: 720 ENTPLEREET 729
                +R ++
Sbjct: 665 AMMAAKRAKS 674


>gi|300940007|ref|ZP_07154632.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 21-1]
 gi|300455140|gb|EFK18633.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 21-1]
          Length = 673

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELMRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|301021431|ref|ZP_07185455.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 69-1]
 gi|300398067|gb|EFJ81605.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 69-1]
          Length = 673

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|296390981|ref|ZP_06880456.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAb1]
          Length = 1245

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 134/1055 (12%), Positives = 298/1055 (28%), Gaps = 140/1055 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-----QTQ 60
             LS  ES   + +      Y Q+  ++     +       +    + L+        + +
Sbjct: 219  ALSAPESLAALLEQ-GGDWYRQLHQLDAQARAAWRAARVELEALLRDLRPYLNGNSYRGK 277

Query: 61   CIEERFSLLSSFFLT-QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK--IRDRFNTY 117
              +E F           +   Q   + +    +     +++                   
Sbjct: 278  DSDETFDAWLQALADWSEGGEQPANLGKFGQTRIKLTAKRVAPEHAALRAIDAWAAHQEE 337

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +   +    L     +    E  K++   + F+DL+   +  L+       +   I ++ 
Sbjct: 338  RPDLAPHLLLHALGEVGRELEVEKQRRAEIGFDDLLSRLDRALQGPG-GERLAQLIREQF 396

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               LIDE QDT  +Q+ +   +           +    LF +GD KQ+IY+F GA+    
Sbjct: 397  PVALIDEFQDTDPVQYRIFERIYRIAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTY 456

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            LR +            +     L  +FRSTA ++   ++ F+  E     +         
Sbjct: 457  LRAREA---------TRGRHYTLGKNFRSTAAMVAAANRCFAFAEEHPRGAFRFAREGLE 507

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                   V      E+++            +  +    L   +    +A R A  I   +
Sbjct: 508  NPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLDAEAGVLGSAAYRQEMAERSASAIRRWL 567

Query: 358  ------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                          G  R ++  DI +LVR R +      +   L      SV  +DR  
Sbjct: 568  SLADLGRAGFADEQGGWRALRPADIAILVRGRAEA---EAIRSALAARRLASVYLSDRDS 624

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D     DL+   R       D      L +   +     + ++           E   
Sbjct: 625  VFDSQEAADLLHWLRACADPGADALLRVALATRSLHLDWATLERLNQD--------ELFW 676

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            +        ++   +    L  + +  +  +    +L    G +   +         L E
Sbjct: 677  ERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLLRHADGERSLTNLL------HLAE 730

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            +L          ++ ++ L  +++           ++ + ++++T+H +KGLE P+V L 
Sbjct: 731  WLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHKSKGLEYPLVLLP 790

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               S      +               +     +        +   +        E  RLL
Sbjct: 791  FICSWRELDGNSGAPASFHEDGAAGRVIELARRK----EQAARAYEQANDERLGEDMRLL 846

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-----------------VYDSFHNDER 694
            YV +TRA   + +      ++  KS +     +                    +   + R
Sbjct: 847  YVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCLAALRGECR 906

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               ++     + + ++A                     +     +  +  + +++D    
Sbjct: 907  EIVVEPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQLQASAGLEDDEALE 966

Query: 755  YILNPSTIDTKGKTNLESLLS------------------DNQTFNRGLIIHKLLQV---- 792
               +   I  +  T  E   S                    +    G  +H LL+     
Sbjct: 967  SDESQEPISAEEATFHEEGRSAEQPPVAHASEMRDDLHRFPRGPAPGTFLHGLLEWAGRE 1026

Query: 793  ---IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLENP----MMTTAMSCD 844
               +      +R+  +   C        A+     L       L  P     +   ++  
Sbjct: 1027 GFDVARADAQRRRELVARRCDLRGWKDWAEPLDLWLEQYLAEPLRWPGGETNLAGLVAYQ 1086

Query: 845  SYSEVSVSGK-----------------------INCPKKDIIISGRIDQISISQQNIFIF 881
               E   +                         +     + +  G +D +   Q   ++ 
Sbjct: 1087 VEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNGMFKGFVDLVFEHQGRFYVA 1146

Query: 882  EYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDS---------YPNKSLVCL 923
            +YK++     +  + P           +  Q  +Y   L            Y       +
Sbjct: 1147 DYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALHRQLKARLPDYDYDRHMGGAV 1206

Query: 924  LIYVSEPKV------FIIPQNKLNKAFAEISTKIP 952
             +++   +       F  P  +L +    + +  P
Sbjct: 1207 YLFLRGARAATQGLHFERPPRELIERLDALFSGQP 1241


>gi|121594696|ref|YP_986592.1| UvrD/REP helicase [Acidovorax sp. JS42]
 gi|120606776|gb|ABM42516.1| UvrD/REP helicase [Acidovorax sp. JS42]
          Length = 1101

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 131/941 (13%), Positives = 294/941 (31%), Gaps = 101/941 (10%)

Query: 12   SYELIYKDLWPLPYFQ-VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
                ++     L         + +  +     N T  K A  +  A     + +R   L 
Sbjct: 240  DLAGLHHPADALASDAARQRWHAWAQVLGAQANKTPQKAADAVIDAWLCDDLGQRLDTLR 299

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              F           + +          ++ +         R +   +   +       LA
Sbjct: 300  KAFFVASEDRLSKNLEK------FAAAQEAEGELQRLCAARRQHEAWLHQQR---MARLA 350

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            + L A + + K++   +D  D+      +L    +S W++ ++D  + H+L+DE QDT+ 
Sbjct: 351  RALIAQFAQLKRERGWVDMNDVERTALVMLSDPILSGWVQERLDARVRHLLVDEFQDTNP 410

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +QW+ + +    +         P ++F VGD KQSIY F  AEP+     +         
Sbjct: 411  LQWQALHAWLAGYAGAGGGQQ-PPSVFIVGDPKQSIYRFRRAEPQVFKAAQ-----AFVR 464

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             G    ++    + R+   ++  V    +    A     +      H +        ++L
Sbjct: 465  EGLGGDLLACDHTRRNAIGVIAAV----NQAMQAAQAQGEYAGFRDHTTESRDPGQLLRL 520

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                              W         E+  ++        +          +      
Sbjct: 521  PPITAPDGGDAAAATAPEWRDTLTQPRHEAEETL-------RMRECAQAAQWVAAQIAAG 573

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +Q ++I+VL RKR     +    R L     +  V  ++  L +   ++D++AL   ++S
Sbjct: 574  VQPQEIMVLARKRDRLASLQEALRAL----HVPCVQPEKAELGEAPEVQDIVALLDALVS 629

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKI-----CTQRHETETVYEYIQKFANCGISKFQHVI 485
               DLS    L+SPLF  ++  + +I      T    +   +  + + +       Q + 
Sbjct: 630  PGHDLSLARALRSPLFGLTDHALVQIALRVRQTAAEGSPCSWFDVLQKSELLPPDLQALA 689

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL--DEFLNFTLRNEQNS 543
              + +     +   PHD    I        +F +         +  +         +Q+ 
Sbjct: 690  PVLAQYKRWVETRPPHDALHAIYEHGDVPARFAAAAPASQRAGVLANLRALLAAALQQDG 749

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               L           P ++         VR++T+H AKGLE+  V L+DT ++    + +
Sbjct: 750  GRYLTAYAFVRAMKRPGMRAPGRVEAQAVRLLTIHGAKGLEAHSVLLLDTDARAQKAETM 809

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
              +   P     P   +++    +      DL+       Q E    LYV MTRA   L 
Sbjct: 810  GALVDWPGEQAAPLRFVFLASESNPPPSAVDLLAAELAERQREELNTLYVAMTRAKHCLA 869

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            +    +++    +   +W++ + +S  +        L +  +       +   +      
Sbjct: 870  LSAVQSST----AAPGSWWNRLAESLQDAPVPPAAPLGDVADDAAVALPQLPPYAGAAPG 925

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
             +       +   Q                                            +G
Sbjct: 926  AQAAAAGAPVSTPQS------------------------------------------RQG 943

Query: 784  LIIHKLLQVIFTLPEHKRKNF--ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
              +H+LL+    +   +                     E      ++ R +       A 
Sbjct: 944  EAMHQLLEQAGVVGARRAGGVWPARRLAQLARDFDITAEAAAQAAAMARSILQGEGAWAW 1003

Query: 842  SCDSYSEVSVSGKINCPKKD-----IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            + D   +      +    +      ++   +           ++ +YK+     ++ + +
Sbjct: 1004 NPDHVEQALNEAPLVYQGQGLRLDRLVRLRQP----REGARWWVLDYKSATAPERQPQLM 1059

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
                  QL +Y + +   +P + +    +   + ++ ++  
Sbjct: 1060 A-----QLRLYREAVGAQFPGERVGAAFL-TGDGRLVVVDA 1094


>gi|254244904|ref|ZP_04938226.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 2192]
 gi|126198282|gb|EAZ62345.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 2192]
          Length = 1245

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 134/1055 (12%), Positives = 295/1055 (27%), Gaps = 140/1055 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-----QTQ 60
             LS  ES   + +      Y Q+  ++     +       +    + L+        + +
Sbjct: 219  ALSAPESLAALLEQ-GGDWYRQLDQLDAQARAAWRAARVELEALLRDLRPYLNGNSYRGK 277

Query: 61   CIEERFSLLSSFFLT-QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--KIRDRFNTY 117
              +E F           +   Q   + +    +     +++                   
Sbjct: 278  DSDETFDAWLQALADWSEGGEQPANLGKFGQTRIKLTAKRVAPEHAALRAIDAWAAHQEE 337

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +   +    L     +    E  K++   + F+DL+   +  L+       +   I ++ 
Sbjct: 338  RPDLAPHLLLHALGEVGHELEIEKQRRAEIGFDDLLSRLDRALQGPG-GERLAQLIREQF 396

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               LIDE QDT  +Q+ +   +           +    LF +GD KQ+IY+F GA+    
Sbjct: 397  PVALIDEFQDTDPMQYRIFERIYRIAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTY 456

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            LR +            +     L  +FRSTA ++   ++ F+  E     +         
Sbjct: 457  LRAREA---------TRGRHYTLGKNFRSTAAMVAAANRCFAFAEEHPRGAFRFAREGLE 507

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                   V      E+++            +       L   +    +A R A  I   +
Sbjct: 508  NPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLDVEAGVLGSAAYRQEMAERSASAIRRWL 567

Query: 358  ------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                          G  R ++  DI +LVR R +      +   L      SV  +DR  
Sbjct: 568  SLADLGRAGFADEQGGWRALRPADIAILVRGRAEA---EAIRSALAARRLASVYLSDRDS 624

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D     DL+   R       D      L +   +     + ++           E   
Sbjct: 625  VFDSQEAADLLHWLRACADPGADTLLRVALATRSLHLDWATLERLNQD--------ELFW 676

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            +        ++   +    L  + +  +  +    +L    G +   +         L E
Sbjct: 677  ERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLLRHADGERSLTNLL------HLAE 730

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            +L          ++ ++ L  +++           ++ + ++++T+H +KGLE P+V L 
Sbjct: 731  WLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHKSKGLEYPLVLLP 790

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               S      +               +     +        +   +        E  RLL
Sbjct: 791  FICSWRELDGNSGAPASFHEDGAAGRVIELARRK----EQAARAYEQANDERLGEDMRLL 846

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-----------------VYDSFHNDER 694
            YV +TRA   + +      ++  KS +     +                    +   + R
Sbjct: 847  YVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCLAALRGECR 906

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               ++     + + ++A                     +     +  +  + + +D    
Sbjct: 907  EIVVEPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQLQASAGLDDDEVLE 966

Query: 755  YILNPSTIDTKGKTNLESLLS------------------DNQTFNRGLIIHKLLQV---- 792
               +   I  +  T  E   S                    +    G  +H LL+     
Sbjct: 967  SDESQEPISAEEATFHEEGRSAEQPPVAHASEMRDDLHRFPRGPAPGTFLHGLLEWAGRE 1026

Query: 793  ---IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLENPMMT---------- 838
               +      +R+  +   C        A+     L       L  P             
Sbjct: 1027 GFDVARADAQRRRELVARRCDLRGWKDWAEPLDLWLEQYLAEPLRWPGGETSLAGLVAYQ 1086

Query: 839  -----TAMSCDSYSEV------------SVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
                    +    +E             +    +     + +  G +D +   Q   ++ 
Sbjct: 1087 VEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNGMFKGFVDLVFEHQGRFYVA 1146

Query: 882  EYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDS---------YPNKSLVCL 923
            +YK++     +  + P           +  Q  +Y   L            Y       +
Sbjct: 1147 DYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALHRQLKARLPDYDYDRHMGGAV 1206

Query: 924  LIYVSEPKV------FIIPQNKLNKAFAEISTKIP 952
             +++   +       F  P  +L +    + +  P
Sbjct: 1207 YLFLRGARAATQGLHFERPPRELIERLDALFSGQP 1241


>gi|315122506|ref|YP_004062995.1| DNA helicase II [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495908|gb|ADR52507.1| DNA helicase II [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 681

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 92/553 (16%), Positives = 168/553 (30%), Gaps = 118/553 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K +   Y +  +K    DF  LI+   + L        I     Q++++I++DE QD + 
Sbjct: 194 KEIYIDYVDHLQKTKSCDFGGLILKAIEALHHPH----ILKYYHQKLSYIMVDEYQDINT 249

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+ ++R L +             ++  VGDE Q IY + GA+   ++  ++        
Sbjct: 250 AQYLLLRLLCQK-----EDKQDNASICCVGDEDQCIYEWRGAQFSHIINFQKDF------ 298

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             ++ SII+L  ++RST+ IL   +K+ +  +     +  +                V +
Sbjct: 299 --KEASIIKLEQNYRSTSHILNTANKLIAHNKQRFNKNLFTKRHCP-------DDSKVTI 349

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                   +                             I   I  +  T           
Sbjct: 350 HVSQNDTSELST--------------------------IITEIRKIQNTG---------- 373

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +   +I +LVR    T          K    I           D   I+D  A  R I  
Sbjct: 374 MSLNNIAILVRTAWQTRKFEDAFIEEK----IPYKVIGG-SFYDRQEIRDSFAYFRLICQ 428

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKFQH 483
             ++  F  ++  P     ++   KI         ++ E         +F          
Sbjct: 429 GNNEQDFKRIINLPKRGIGKESFRKIQNHAAQRQISLLEASEELIKNNEFRPQIRKSLHT 488

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRN 539
            +  I     +    +P     +IL        + +        E ++ + E ++   + 
Sbjct: 489 FVNEIRRWNSLTNQTNPMHLAQMILEESGYIAMWKNDKSSEKSQERLENIKELISKIEQY 548

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E      LQ  +                N N ++IMT+H AKGLE   VF+      +  
Sbjct: 549 ETLPSYILQAPLR-------EGVGPSVINPNYLQIMTLHAAKGLEFDTVFIPGWEQGLLP 601

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   E   RL Y+G+TRA 
Sbjct: 602 HQLSLN-----------------------------------EGDLEGERRLAYMGITRAK 626

Query: 660 DQLIICKHSNTSN 672
           +   +    N   
Sbjct: 627 NNCHLFYTINRRT 639


>gi|49176407|ref|YP_026251.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89110239|ref|AP_004019.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K-12 substr. W3110]
 gi|170083265|ref|YP_001732585.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238902859|ref|YP_002928655.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli BW2952]
 gi|54041576|sp|P09980|REP_ECOLI RecName: Full=ATP-dependent DNA helicase rep
 gi|48994965|gb|AAT48209.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K-12 substr. MG1655]
 gi|85676270|dbj|BAE77520.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K12 substr. W3110]
 gi|169891100|gb|ACB04807.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli str. K-12 substr. DH10B]
 gi|238860820|gb|ACR62818.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli BW2952]
 gi|260451377|gb|ACX41799.1| ATP-dependent DNA helicase Rep [Escherichia coli DH1]
 gi|315138356|dbj|BAJ45515.1| ATP-dependent DNA helicase Rep [Escherichia coli DH1]
          Length = 673

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRKRWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|212633276|ref|YP_002309801.1| ATP-dependent DNA helicase RepA [Shewanella piezotolerans WP3]
 gi|212554760|gb|ACJ27214.1| ATP-dependent DNA helicase RepA [Shewanella piezotolerans WP3]
          Length = 670

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/597 (16%), Positives = 207/597 (34%), Gaps = 120/597 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   L   Y +  K    LDF+DLI+    LL++ +    +R +    I ++L+DE QD
Sbjct: 162 QLFAVLYHRYAQHMKAYNALDFDDLILLPTLLLRQNEE---VRTRWQTRIQYMLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L  +                VGD+ QSIYS+ GA+P+ ++   +   K 
Sbjct: 219 TNTSQYEMVKLLVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFPK- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +    +  S           G+   
Sbjct: 268 -------LKLIKLEQNYRSSQRILRAANILIANNPHVYEKALFSE-------LAYGEPIR 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V +                             ++    A R+   I+ MI    +     
Sbjct: 314 VLI----------------------------AANEEQEAERV---IAEMIRHKFVGRT-- 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q  D  +L R    + L+           +I    +          IKD+MA  R 
Sbjct: 341 ----QFGDYAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFGRAEIKDIMAYLRL 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISK 480
           +++ +DD +F+ ++  P        + ++      +  +++          +     ++ 
Sbjct: 393 VVNPDDDNAFLRIVNLPKRGIGPATLERLGNFSNQKQISMFAAIFETDLNHELPPAAMAS 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNF 535
                +++ E+   A+   P +    ++               ++     +  + E   +
Sbjct: 453 LYKFGRFVVEMGDCAERGDPVEAVKQLIRNINYEDYLYETSTSAKAAEMRMKNISELYRW 512

Query: 536 TLRNEQNSY----SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                Q        +L E+++ L       + +     ++V++MT+H +KGLE P VF+V
Sbjct: 513 VTEMLQGDDLDEAMTLPEVVARLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPYVFMV 572

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               ++  H+                                       +   +E  RL 
Sbjct: 573 GAEERILPHQSSID-----------------------------------EDNVDEERRLA 597

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           YVG+TRA  +L            ++ +      + +   +D   +  K   S+ + +
Sbjct: 598 YVGITRAQKELWFIICRERRQFGETIRCEPSRFLMELPQDDLIWENRKPVQSVEQRQ 654


>gi|74314292|ref|YP_312711.1| ATP-dependent DNA helicase Rep [Shigella sonnei Ss046]
 gi|157154755|ref|YP_001465258.1| ATP-dependent DNA helicase Rep [Escherichia coli E24377A]
 gi|188492589|ref|ZP_02999859.1| ATP-dependent DNA helicase Rep [Escherichia coli 53638]
 gi|191166128|ref|ZP_03027963.1| ATP-dependent DNA helicase Rep [Escherichia coli B7A]
 gi|194438642|ref|ZP_03070730.1| ATP-dependent DNA helicase Rep [Escherichia coli 101-1]
 gi|218556340|ref|YP_002389254.1| ATP-dependent DNA helicase Rep [Escherichia coli IAI1]
 gi|253775597|ref|YP_003038428.1| ATP-dependent DNA helicase Rep [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163722|ref|YP_003046830.1| ATP-dependent DNA helicase Rep [Escherichia coli B str. REL606]
 gi|293413221|ref|ZP_06655883.1| ATP-dependent DNA helicase Rep [Escherichia coli B354]
 gi|293468096|ref|ZP_06664508.1| ATP-dependent DNA helicase Rep [Escherichia coli B088]
 gi|300921517|ref|ZP_07137861.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 115-1]
 gi|300923277|ref|ZP_07139326.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 182-1]
 gi|300930059|ref|ZP_07145489.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 187-1]
 gi|301303672|ref|ZP_07209793.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 124-1]
 gi|301325467|ref|ZP_07218950.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 78-1]
 gi|307313645|ref|ZP_07593265.1| ATP-dependent DNA helicase Rep [Escherichia coli W]
 gi|309796282|ref|ZP_07690692.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 145-7]
 gi|331649602|ref|ZP_08350684.1| ATP-dependent DNA helicase Rep [Escherichia coli M605]
 gi|331675248|ref|ZP_08375999.1| ATP-dependent DNA helicase Rep [Escherichia coli TA280]
 gi|73857769|gb|AAZ90476.1| rep helicase, a single-stranded DNA dependent ATPase [Shigella
           sonnei Ss046]
 gi|157076785|gb|ABV16493.1| ATP-dependent DNA helicase Rep [Escherichia coli E24377A]
 gi|188487788|gb|EDU62891.1| ATP-dependent DNA helicase Rep [Escherichia coli 53638]
 gi|190903904|gb|EDV63618.1| ATP-dependent DNA helicase Rep [Escherichia coli B7A]
 gi|194422446|gb|EDX38445.1| ATP-dependent DNA helicase Rep [Escherichia coli 101-1]
 gi|218363109|emb|CAR00749.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli IAI1]
 gi|242379311|emb|CAQ34122.1| rep helicase, a single-stranded DNA dependent ATPase [Escherichia
           coli BL21(DE3)]
 gi|253326641|gb|ACT31243.1| ATP-dependent DNA helicase Rep [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975623|gb|ACT41294.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli B str. REL606]
 gi|253979779|gb|ACT45449.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli BL21(DE3)]
 gi|291321474|gb|EFE60912.1| ATP-dependent DNA helicase Rep [Escherichia coli B088]
 gi|291468169|gb|EFF10666.1| ATP-dependent DNA helicase Rep [Escherichia coli B354]
 gi|300411585|gb|EFJ94895.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 115-1]
 gi|300420422|gb|EFK03733.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 182-1]
 gi|300462047|gb|EFK25540.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 187-1]
 gi|300840972|gb|EFK68732.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 124-1]
 gi|300847694|gb|EFK75454.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 78-1]
 gi|306906626|gb|EFN37138.1| ATP-dependent DNA helicase Rep [Escherichia coli W]
 gi|308120164|gb|EFO57426.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 145-7]
 gi|315063074|gb|ADT77401.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli W]
 gi|315254141|gb|EFU34109.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 85-1]
 gi|323167632|gb|EFZ53337.1| ATP-dependent DNA helicase Rep [Shigella sonnei 53G]
 gi|323182551|gb|EFZ67955.1| ATP-dependent DNA helicase Rep [Escherichia coli 1357]
 gi|323380863|gb|ADX53131.1| ATP-dependent DNA helicase Rep [Escherichia coli KO11]
 gi|323943819|gb|EGB39914.1| ATP-dependent DNA helicase Rep [Escherichia coli H120]
 gi|323959035|gb|EGB54704.1| ATP-dependent DNA helicase Rep [Escherichia coli H489]
 gi|323969380|gb|EGB64679.1| ATP-dependent DNA helicase Rep [Escherichia coli TA007]
 gi|324115758|gb|EGC09693.1| ATP-dependent DNA helicase Rep [Escherichia coli E1167]
 gi|330908080|gb|EGH36599.1| ATP-dependent DNA helicase Rep [Escherichia coli AA86]
 gi|331041472|gb|EGI13620.1| ATP-dependent DNA helicase Rep [Escherichia coli M605]
 gi|331067534|gb|EGI38938.1| ATP-dependent DNA helicase Rep [Escherichia coli TA280]
 gi|332084707|gb|EGI89895.1| ATP-dependent DNA helicase Rep [Shigella boydii 5216-82]
          Length = 673

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|148262658|ref|YP_001229364.1| exodeoxyribonuclease V, beta subunit [Geobacter uraniireducens Rf4]
 gi|146396158|gb|ABQ24791.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Geobacter
            uraniireducens Rf4]
          Length = 1085

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 114/873 (13%), Positives = 252/873 (28%), Gaps = 138/873 (15%)

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               YL A   + K++  V  FEDL+++ +  L++          I +     LIDE QDT
Sbjct: 227  FFDYLAAELPKRKRRANVRFFEDLLLDLHSALERNGSPLPRL--IRERYRAALIDEFQDT 284

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
              +Q+ +  ++                 F +GD KQ+IYSF GA+    L      ++R 
Sbjct: 285  DPVQFRIFDAVY--------PAGDETPFFLIGDPKQAIYSFRGADIFAYLEAAADTEQRH 336

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
            T          L  ++RS   ++  V+ +F          +       H S        +
Sbjct: 337  T----------LGENWRSEPALIQAVNGLFESRVEPFYFDDI------HFSRVTPAEREI 380

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-K 367
             L         +       +       + +  +  +L   +A  I+ ++   +       
Sbjct: 381  DLLTMDGKPDPAPFRLWFVNRREAGKPINKGDAWEMLPAAVAGEIARLLQDGSDGRLLIG 440

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +R +   DI VLVR  +   L+    R       I  V      L +    ++++   + 
Sbjct: 441  ERPVAPGDIAVLVRAHRQARLVQQALR----QRGIPSVLCSAGNLFESDEAEEILRFLKA 496

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +    ++      L + +   S D +  +                      + ++ V+  
Sbjct: 497  VAEPTNERLLKAALVTDMVGVSGDVLAGLLAD------------------ENSWETVLAE 538

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                  I             L  ++ R + +    G   +  +                 
Sbjct: 539  FRLYHEIWTGNGCMAMAMRFLAVRRVRSRLLPLPAGERRLTNILHCFETIHEAAGEQNLG 598

Query: 547  LQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            L+ +I+ L +           +     +   V+++T+H +KGLE PVVF     ++    
Sbjct: 599  LEGVIAWLAERIAEEPKREEHEIRLETDAQAVQLVTIHKSKGLEYPVVFCPFCWAEFGGK 658

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            +     H                     +  +    +   +    E  RLLYV +TRA  
Sbjct: 659  EKTALFHDEQRTTVVDIG----------SPDLDAHRRQAAQEGLAESLRLLYVALTRARH 708

Query: 661  QLIICKHSNTSNE---------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            +  +   +                    K     +   M+ D     E  +       + 
Sbjct: 709  RCYLAWGAFKDAGDSAMHYLLHPEALAVKGQVALSDEAMLDDLRRLAEAAESSIAVLPLP 768

Query: 706  KDEWIAYEWSTHHPENTPLER------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            + + I+Y      P+            +E                  I+   +       
Sbjct: 769  EADGISYTPPAVEPDVFTCRAFSGAIDQEWRVTSFTAFTTTAGHRPHIQEFPDRDETTLE 828

Query: 760  STIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
            +           S   +  +    G+  H++ + +      +  + + +   K    +P+
Sbjct: 829  ADTGRLPAEPPPSGIFAFPKGAAAGIFFHEIFESLDFTAAAETASPLIAELLKK-HSFPS 887

Query: 819  KEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKKDII------- 863
               + +   +  +L+ P+        +         +E+     +     + +       
Sbjct: 888  DWRETVCSMVNNVLQTPLIQGKGVFTLADVPLGHRLTELEFFFPLAFISSERLKNVATRW 947

Query: 864  ------------------------ISGRIDQISISQQNIFIFEYKTHHHVPQ-------- 891
                                    + G +D +       +I ++K++H   +        
Sbjct: 948  NGMDLPLDMSELFSRLSFMPVKGMVRGFMDMVFEQGGRYYIVDWKSNHLGNRIEEYGQAQ 1007

Query: 892  -EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
             + E     +  Q  +Y       Y    +   
Sbjct: 1008 LQREMERNLYPLQYLLYTVAFNR-YLQLRVDGY 1039


>gi|157738288|ref|YP_001490972.1| ATP-dependent DNA helicase UvrD [Arcobacter butzleri RM4018]
 gi|157700142|gb|ABV68302.1| ATP-dependent DNA helicase, UvrD/PcrA family [Arcobacter butzleri
           RM4018]
          Length = 684

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 113/619 (18%), Positives = 201/619 (32%), Gaps = 131/619 (21%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEE 139
           K  I + INK+ P           E  K ++   +    K+T           +   YE 
Sbjct: 119 KKRILKSINKEIPSAL-----LASEVSKYKNSLMSPSEVKATAQLKLYQEIAQIYEDYEN 173

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             +KN ++DF+DL++    +LK  +    +  +I Q+  +I++DE QDT+ +Q+ ++R L
Sbjct: 174 YLEKNNLVDFDDLLLLPYKILKNNE---NLAKQISQKYQYIMVDEYQDTNELQYRLLRLL 230

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                      SS   L  VGD+ QSIY + GA  K +L      +           +I+
Sbjct: 231 C----------SSHNNLCVVGDDDQSIYGWRGATIKNILNFSDHFENSL--------VIK 272

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RST  IL   +++     +  G     T                           
Sbjct: 273 LEDNYRSTDTILNHANQLIEHNRDRLGKKLIGTR-------------------------- 306

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                         D   +        R+I   I  +I +              K+I +L
Sbjct: 307 --TKGDSIRIYESNDENDET-------RKIVEDIKKLIDSGE----------NPKNIAIL 347

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  +        N   +           +   IKDL+A  R + +  D+ S   
Sbjct: 348 FRVNALSRSLEEGF----NKAGLHYKLVGGMKFYERSEIKDLIAYFRILTNLNDNFSIKR 403

Query: 440 MLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA---------NCGISKFQHVIKYIH 489
           ++  P     +  I K+        +++++ IQ+                  +     I 
Sbjct: 404 IINKPKRGIGKTTIEKLEEKSIETGKSIFDLIQELDAEGISLIVGKKNARTLKVFEASIL 463

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNE-QNSYSSL 547
           +L   +   S   F          R  + +   G E    +DEF  +      QN +  L
Sbjct: 464 DLRE-SLTQSKMRFLDNFEETFDYRASYDNLPDGFERQANIDEFYGYIRDYFIQNPHLDL 522

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           ++ ++E+             +   V +M+VH +KGLE   +F++      F         
Sbjct: 523 KDFLNEIALESE----NDDYSGEAVSMMSVHASKGLEFKNLFIIGLEEGFFPITGDGS-- 576

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                                EE  RL YV +TRA D L +   
Sbjct: 577 -----------------------------------DLEEERRLGYVAITRAKDNLTLSFV 601

Query: 668 SNTSNEKKSNQRTWYDMVY 686
            +   + K    +    + 
Sbjct: 602 HSRFYKGKRTVLSKSRFLS 620


>gi|88703287|ref|ZP_01101003.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71]
 gi|88702001|gb|EAQ99104.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71]
          Length = 1107

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 147/957 (15%), Positives = 278/957 (29%), Gaps = 140/957 (14%)

Query: 25   YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
                     ++   +   +       + L   S        +  +++  LT K   +K +
Sbjct: 230  ELLQERFAAHMQQLITLMDYREQNLKRGLL-FSGDCSDLASWRGVAALLLTGKGEWRKTV 288

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL----------------- 127
                +    P  K +  + + + + +                                  
Sbjct: 289  T---VRDGFPAGKGEPAELKAQMLALLSTLREEDDGALLGELRQVVLLPDVDDEPAHWDV 345

Query: 128  -----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                  L   L A      ++   +D   + +   D L        +  ++D  I H+L+
Sbjct: 346  LVAVTRLLPRLGAELLLVFQQKGEVDHAQIAMAALDALGTDREPTDLALRLDHSIEHLLV 405

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            DE QDTS +Q+E+IR LT  +      +   PRTL  VGD  QSIY F  A     +R +
Sbjct: 406  DEFQDTSSVQFELIRRLTRGWHEHNEANPQGPRTLLLVGDAMQSIYGFREANVGLFIRAR 465

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                          + ++L ++FRS   ++   +  F                       
Sbjct: 466  NE-----GVGDLSLTPLDLQVNFRSQQGLVEWTNAHFQRGFPQ---------------VD 505

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
              Q+G VQ  E + ++   +             +   E+    LA  +A           
Sbjct: 506  DAQLGAVQFREAIAARAPDEAPEFALFTGDGGQAAEIEALCDKLAEGVARD--------- 556

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                        + I VL R R     I    R       I V   D   L     I+DL
Sbjct: 557  ----------DVESIAVLGRSRTQLRPILAALRA----RDIDVAARDLDTLAQRPLIRDL 602

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-------RHETETVYEYIQKFA 474
            + L   +  + D  +++ +L++P       D+ ++ +        R    T    +Q  +
Sbjct: 603  LTLTTVLCDRFDRFAWLSLLRTPAIALDNADLLRMASHCPTAADFRDREITRDTALQAVS 662

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV-LDEFL 533
              G  +   + K +    H     +   +         G     S       +  L    
Sbjct: 663  RPGQQRLGQLQKLLAWADHYKDRLALRVWVEECWLFLGGAASLASDADLRDTERFLQCLE 722

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               +     +  SL   +  L   P   +        +V +MT+H AKGLE   VF+   
Sbjct: 723  ELEVDQAPLNGRSLATAVEALYASPGDERC-------KVEVMTLHKAKGLEFDWVFIPAL 775

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR----NNIVSDLIKHLKKSTQEEYNR 649
                        +     L   P   +   +  +       +   L    K+    E  R
Sbjct: 776  AKSTGGQDKELLLWDEFVLPGAPPSFLLDIRDTAEGGANPRLYDYLKAQAKQKRDYEAAR 835

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            L YVG TRA+D L +    + S  K S        +          +      S+++D  
Sbjct: 836  LFYVGCTRAADYLWLGAALSFSEAKDSYSPPGSGSLLSVIWPSIEHQASVTHVSLDEDAV 895

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
             A           P              ++ +                            
Sbjct: 896  DAPTLGYRRLRELPDIAVVAANSPASPLELSENYL------------------------- 930

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPE-HKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                         G  +H+ ++ +   PE  +  +       + A +    + + L   +
Sbjct: 931  ---------ARALGTAVHRCIEALIYKPELPECCDEKLRGLLRVALIEAGADRQALPELV 981

Query: 829  T-------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID--QISISQQNIF 879
                    RLL +     A+S     E +    +            +D   +       +
Sbjct: 982  LEGASMLDRLLGDSWARWALSAQ-RRERAAELPLTIATGTGAQQLILDYSFLDEEAGERW 1040

Query: 880  IFEYKTHHHVPQEI-----EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
            + +YKT    P E           ++  QL+ Y + L   + ++ + C L + +  +
Sbjct: 1041 VIDYKTAIPGPGEDVRQFVMAQLESYGEQLARYFEALNTRF-DEPVRCALYFPALGR 1096


>gi|304415298|ref|ZP_07395988.1| DNA helicase and single-stranded DNA-dependent ATPase [Candidatus
           Regiella insecticola LSR1]
 gi|304282853|gb|EFL91326.1| DNA helicase and single-stranded DNA-dependent ATPase [Candidatus
           Regiella insecticola LSR1]
          Length = 690

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/677 (14%), Positives = 209/677 (30%), Gaps = 121/677 (17%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +        +  S F    +    K +  Q I +    L++ + +      +++D
Sbjct: 107 LEIIKREYVALGMKANFSLFDAYDQMALLKELTQQWIKEDKILLQQLVARIAHWKNELQD 166

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   +       L  +  A Y+   K   VLDF+DLI     LL+       +R +
Sbjct: 167 PLTVAAQTE--GELDRLFAHCYALYDAHLKACSVLDFDDLIALPTLLLRNN---QQVRER 221

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
               + ++L+DE QDT+  Q+++++ L  D                VGD+ QSIYS+ GA
Sbjct: 222 WQHRLGYLLVDEYQDTNTSQYQLVKLLAGD----------KACFTVVGDDDQSIYSWRGA 271

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P+ +        +          +I+L  ++RS+  IL   + + +   +       S 
Sbjct: 272 NPQNLQLLNEDFPQ--------LRVIKLEQNYRSSGRILNAANILIANNSHIFEKKLFSA 323

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           +  + + + +++                         A ++   
Sbjct: 324 Q------------DYGERLKVITADNEND-----------------------EAEKVVNA 348

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +          ++   +  +  D  +L R      +   +        +I    +     
Sbjct: 349 V---------ITHHFIKKSKYADYAILYRGNHQARIFEKIL----LQNRIPYKISGGDSF 395

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
                IKD +A  R + + +DD +F+ ++ +P        I K+        ++++    
Sbjct: 396 FSRPEIKDSLAYLRLLTNPDDDSAFLRIINTPKREIGAVTIQKLGEWANLRHKSLFSASF 455

Query: 472 KFANCGISKFQHV--IKYIHELIHIAQ---FCSPHDFFTLILGAKKGRQQFISR-----F 521
                     ++   ++     +          P      +  A                
Sbjct: 456 DLGLTQHLTSRNATSLQRFTHWMAEIMPLVERDPSTAIQYLRNAVDYESWLYEISPSPLA 515

Query: 522 GNEVIDVLDEFLNFTLRNEQN----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
               +  ++    +              +L + ++         K  ++   +EV++MT+
Sbjct: 516 AEMRMKNVNLLFLWLEEMLSGSALHEPMTLIQAVTRFTLRDLMEKGKNNKEEDEVQLMTL 575

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE P VFLV     +  H++                                   
Sbjct: 576 HASKGLEFPYVFLVGMEEGLLPHQNSLD-------------------------------- 603

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              +   +E  RL YVG+TRA  +L            +  +      + +   +D     
Sbjct: 604 ---EGNVDEERRLAYVGITRAQRELFFTLCKERRQYGELIRPDPSRFLLELPQDDLDWGD 660

Query: 698 IKLTNSINKDEWIAYEW 714
            +   S+ +        
Sbjct: 661 ARQEISVEEKRRKGLSH 677


>gi|157163251|ref|YP_001460569.1| ATP-dependent DNA helicase Rep [Escherichia coli HS]
 gi|170022195|ref|YP_001727149.1| ATP-dependent DNA helicase Rep [Escherichia coli ATCC 8739]
 gi|170680827|ref|YP_001746097.1| ATP-dependent DNA helicase Rep [Escherichia coli SMS-3-5]
 gi|256026126|ref|ZP_05439991.1| ATP-dependent DNA helicase Rep [Escherichia sp. 4_1_40B]
 gi|300947366|ref|ZP_07161562.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 116-1]
 gi|300955220|ref|ZP_07167615.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 175-1]
 gi|301028989|ref|ZP_07192146.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 196-1]
 gi|301646157|ref|ZP_07246056.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 146-1]
 gi|307140478|ref|ZP_07499834.1| ATP-dependent DNA helicase Rep [Escherichia coli H736]
 gi|312971940|ref|ZP_07786114.1| ATP-dependent DNA helicase Rep [Escherichia coli 1827-70]
 gi|331665424|ref|ZP_08366323.1| ATP-dependent DNA helicase Rep [Escherichia coli TA143]
 gi|157068931|gb|ABV08186.1| ATP-dependent DNA helicase Rep [Escherichia coli HS]
 gi|169757123|gb|ACA79822.1| ATP-dependent DNA helicase Rep [Escherichia coli ATCC 8739]
 gi|170518545|gb|ACB16723.1| ATP-dependent DNA helicase Rep [Escherichia coli SMS-3-5]
 gi|299878032|gb|EFI86243.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 196-1]
 gi|300317874|gb|EFJ67658.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 175-1]
 gi|300453028|gb|EFK16648.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 116-1]
 gi|301075626|gb|EFK90432.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 146-1]
 gi|310334317|gb|EFQ00522.1| ATP-dependent DNA helicase Rep [Escherichia coli 1827-70]
 gi|315618523|gb|EFU99109.1| ATP-dependent DNA helicase Rep [Escherichia coli 3431]
 gi|323938917|gb|EGB35136.1| ATP-dependent DNA helicase Rep [Escherichia coli E482]
 gi|331057322|gb|EGI29311.1| ATP-dependent DNA helicase Rep [Escherichia coli TA143]
          Length = 673

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|314966451|gb|EFT10550.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL082PA2]
 gi|315103760|gb|EFT75736.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL050PA2]
          Length = 1078

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/865 (14%), Positives = 246/865 (28%), Gaps = 140/865 (16%)

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            +        K   V  F+DLI +    L+           +      +++DE QDT  +Q
Sbjct: 208  VREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQ 267

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            WE++R                  L+ +GD KQSIY+F GA+        +          
Sbjct: 268  WEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ---------- 307

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGTVQL 310
                ++ L +++R+   I+  V+ +FS  +   G+S +  +      R       G    
Sbjct: 308  SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHGISMELVTAHHQESRIKTATTDGPRYH 367

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            W Q       Q     +  T+  D    E         +   I  + G   +      R 
Sbjct: 368  WSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDGLRP 420

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++  DI +LVR R+    +               V +    +    A +DLM L   + +
Sbjct: 421  LRPNDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLMTLLEALEN 476

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              D+     +  S L   +  D+    ++      +              +  V   +H 
Sbjct: 477  -TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAVLHR 535

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                            ++    G +             +             + ++   +
Sbjct: 536  ----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATAAWI 580

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    +  
Sbjct: 581  REQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWH 640

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
               D     + I    +  +I    ++  ++  + E  RLLYV +TRA   + +      
Sbjct: 641  ---DGQRRVLDISSQGTDRSI---AVESHEEDERGENLRLLYVALTRARSAVRLWWSPCP 694

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++     +  +V       E    +  T+        +   +T            ++
Sbjct: 695  ---RRHRWSAFQRLVEMDRTTGELGLGVAGTDPGTLPWLNSGPIATVIAPTNQKLLTRSV 751

Query: 731  KQLMDEQKIPKKLFSPIKNDINEP----------YILNPSTIDTKGKTNLESLLSDNQT- 779
                     P+ L  P+                   ++ S  +      ++    D+   
Sbjct: 752  SAQARACVAPRTLTRPLDTAFARTSYSGLTANLHAAVSESMTNNLIDEPVDDESVDDTAP 811

Query: 780  --------FNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLSITR 830
                     + G ++H +L+ I T         +  +         P      L  S+ +
Sbjct: 812  GLCGLPGGTSFGTLVHTVLEYIDTAATDLSSEVLSITRRALRMSPLPDVPPSELATSLEQ 871

Query: 831  LLENPM--------MTTAMSCDSYSEVSVSGKIN-------------------------- 856
            +L + +        +      D  +E++    +                           
Sbjct: 872  VLHSDLGPLAPGMTLADFSPADRLAEMNFELAMTQHGRSTTMTDLASLLCDPSLVPPDDP 931

Query: 857  ----------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQE--------- 892
                       P  D  + G     ID +         + +YKT+               
Sbjct: 932  ISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDA 991

Query: 893  ----IEHIPYTHIAQLSIYEKILKD 913
                       +  Q  +Y   L  
Sbjct: 992  HTMRAIMFSSHYPLQGLLYSAALHR 1016


>gi|327314682|ref|YP_004330119.1| UvrD/REP helicase [Prevotella denticola F0289]
 gi|326944136|gb|AEA20021.1| UvrD/REP helicase [Prevotella denticola F0289]
          Length = 1094

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 134/883 (15%), Positives = 282/883 (31%), Gaps = 82/883 (9%)

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
                 ++ L +  + ++  IT  +++    L   L + +         F +  +    L+
Sbjct: 279  LESADNWLLKKCPSEERATITALVSE---SLYNDLVQLETLRKSSWREFQSCNLTLRHLS 335

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILI 182
             L L   ++   +E  K         ++ NT  LL    K   + ++  K+   + HI+I
Sbjct: 336  QLRLLHAISEAVDEINKDTNRF----MLSNTQSLLSTLMKDSDTPFVFEKMGAYLKHIMI 391

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDTS IQW+  R L ++     ++H+       VGD KQSIY +   + K +   + 
Sbjct: 392  DEFQDTSTIQWKNFRKLLDNCMAQIDSHN-----LIVGDVKQSIYRWRQGDWKLLNNIEH 446

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                     G++  I  L  ++RS   I+   +  FS          +S           
Sbjct: 447  EFS------GEQIKIQPLDTNYRSEEHIIRFNNAFFSRAVKQTVEELESDGI-------G 493

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  + ++++                 ++    ++     +   +   +  ++     
Sbjct: 494  EANQLTEAYKEIAQHPKRNDGKGCVRIKLFYCGRNEKEYKEKVLEELTDNVRELLSHG-- 551

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                     + KDI +LVR +     I           ++++V ++ F L   LA+  ++
Sbjct: 552  --------CRQKDIAILVRSKGVIQDIADEFLHTF-GTEVTIVSDEAFRLDASLAVNVIV 602

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
               R +   ED L+   ++K             + T + +     E     A   +    
Sbjct: 603  HALRLLTHPEDKLTESKLVK-------LYQQQVLQTGKDDNTLFVEKGSYSARHLLPD-- 653

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLI-LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I     L+ ++      + ++L  L + +G+  ++             F +      +
Sbjct: 654  DYINRFEPLLRMSLMDLVDEIYSLFSLDSLEGQSAYVCT-----------FYDTLNEYLR 702

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            +  + + + I E E+               +R++T+H +KGLE   V +     ++   K
Sbjct: 703  DHPADIDDFIEEWEENLSANTIQSDEVEG-IRLITIHKSKGLEYDNVLIPFCDWELEKKK 761

Query: 602  ----HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                     +      + P IP+   +      +  D  K        +   LLYV  TR
Sbjct: 762  GNTIWCPGENKEKPYGELPLIPVDFSKKNMMGTVFEDDYKAEHLQNTVDNMNLLYVAFTR 821

Query: 658  ASDQLIICKHSNTSNE-KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            A   L I     +    K+                       +L ++   D+      + 
Sbjct: 822  AGKNLFITGKRTSDKRFKELQNGGTASNRSQIIQLLLSELATELNSARLDDQGEKETLAF 881

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-SLLS 775
             +       +    K   +  ++     +        P     S          +     
Sbjct: 882  EYGSLPDNVQSIKKKATANPFEVTPDTHTLKIETFPHPVSFRQSNKSHDFVRGEDLDPSE 941

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
             ++    G I+H+L   I  L E   +  +     +          K L   I   L+N 
Sbjct: 942  RSRYIKVGNILHQLFSTI--LTEADIEPRLKELEQEGIIYNDEITSKELREKIADALKNE 999

Query: 836  MMTTAMSCDSYSEVSVSGKI--NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
            M+    S     ++     I     +       R D++    + + + ++K         
Sbjct: 1000 MVKGWFSP--RWKLFNECTILEYDCENKEAQEHRPDRVMTDGKELIVVDFKFGKP----- 1052

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
                  +  Q+  Y K+L +      +   + YV   +V   P
Sbjct: 1053 ---REEYREQVQRYMKLLTNMGYQH-VSGYIWYVIRNEVIPTP 1091


>gi|271502415|ref|YP_003335441.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech586]
 gi|270345970|gb|ACZ78735.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech586]
          Length = 674

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/738 (14%), Positives = 238/738 (32%), Gaps = 138/738 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I  + +L +E         A  ++        +++ +
Sbjct: 59  AAREMKERV-AQTLGRKETRGLLIATFHTLGLEIIKREY--AALGMKSNFSLFDDQDQLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K +    +      L++ +    +    + D      + +S     
Sbjct: 116 LL------------KELTELWLQNDKDLLQQLVSALSNWKNDLIDPAQAAALARSERD-- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L  +    Y+E  +   VLDF+DLI+    LLK+ D    +R +    + ++L+DE QD
Sbjct: 162 RLFAHCYRLYDEHLRACNVLDFDDLILLPTLLLKRNDE---VRERWQNRLRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L            S      VGD+ QSIYS+ GA P+ +   ++   + 
Sbjct: 219 TNTSQYELVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLSLLQQDFPQ- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +++L  ++RS+  IL   + + +   +       S              G 
Sbjct: 268 -------LQVVKLEQNYRSSGRILKAANILIANNPHVFEKRLYSEL------------GY 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +  + + + ++                          A R+            + ++  
Sbjct: 309 GEALKIITANNED-----------------------HEAERVV---------GELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            R  Q  D  +L R    + L   +        +I    +          IKDL+A  R 
Sbjct: 337 IRKTQYGDYAILYRGNHQSRLFEKVL----MQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + + EDD +F+ ++ +P        + K+    R    +++            +  G+  
Sbjct: 393 LTNPEDDSAFLRIVNTPKREIGPATLQKLGEWARQRNRSLFNASFDMGLSQTLSGRGLES 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNF 535
            Q   ++I ++  +A+          +L                +     +  ++    +
Sbjct: 453 LQRFTQWIGDIARLAEQEPV-KAVRDLLHGLDYESWLYETSPSPKAAEMRMKNVNTLFTW 511

Query: 536 TLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                   + +   +L ++++         +       ++V++MT+H +KGLE P V+LV
Sbjct: 512 MTEMLEGSDLDEPMTLTQVVTRFTLRDMMERNEAEEELDQVQLMTLHASKGLEFPYVYLV 571

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  H+                                       +   +E  RL 
Sbjct: 572 GMEEGLLPHQTSID-----------------------------------EDNVDEERRLA 596

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA  +L            +  +      + +   +D   +  +   S  +     
Sbjct: 597 YVGITRAQKELTFTLCRERRQYGELIRPEPSRFLLELPQDDVMWETERKVVSPQERMQKG 656

Query: 712 YEWSTHHPENTPLEREET 729
                +        R++ 
Sbjct: 657 QNHLANLRAQLAKARDKD 674


>gi|293393861|ref|ZP_06638168.1| ATP-dependent DNA helicase Rep [Serratia odorifera DSM 4582]
 gi|291423688|gb|EFE96910.1| ATP-dependent DNA helicase Rep [Serratia odorifera DSM 4582]
          Length = 674

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 100/646 (15%), Positives = 212/646 (32%), Gaps = 121/646 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  Q + +    L + +    +    + D      + +S         +   
Sbjct: 112 DQLALLKELTKQWLEEDKTLLAQLITTISNWKNDLIDPARAMDLARSQRDKH--FAHCYG 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y    +   VLDF+DLI+    LL++ +    +R +  Q I ++L+DE QDT+  Q+E+
Sbjct: 170 LYHAHMRACNVLDFDDLILLPTLLLQRNEE---VRERWQQRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++  K              
Sbjct: 227 VKLLVG----------TRARFTVVGDDDQSIYSWRGARPQNLVLLKEDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S              G  +  + V 
Sbjct: 269 QVIKLEQNYRSSERILKAANILIANNPHVFEKKLFSEL------------GYGEELKVVT 316

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           + ++                          A R+            + ++   +    +D
Sbjct: 317 ANNED-----------------------HEAERVV---------GELIAHHFVKKTHYRD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + +   +        +I    +          IKDL+A  R + + +DD 
Sbjct: 345 YAILYRGNHQSRVFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDS 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P          K+       ++++++                   Q    ++
Sbjct: 401 AFLRIVNTPKREIGPTTRQKLGEWANLRSKSLFDASFDLGLGQHLTGRGLESLQRFTGWL 460

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRN----E 540
             +  +A+        D    I       +   S    E+    ++    +        E
Sbjct: 461 RGIAELAEREPVAAVRDLIRGIDYESWLFETATSPKAAEMQMKNVNTLFGWMSEMLEGSE 520

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 521 LDEPMTLSQVVTRFTLRDIMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       +   +E  RL YVG+TRA  
Sbjct: 581 QSSID-----------------------------------EDNVDEERRLAYVGITRAQK 605

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +LI           +  +      + +   +D   +  +   S  +
Sbjct: 606 ELIFTLCRERRQYGELVRPEPSRFLLELPQDDLAWETERKVISPQE 651


>gi|92115316|ref|YP_575244.1| ATP-dependent DNA helicase Rep [Chromohalobacter salexigens DSM
           3043]
 gi|91798406|gb|ABE60545.1| ATP-dependent DNA helicase Rep [Chromohalobacter salexigens DSM
           3043]
          Length = 682

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 102/664 (15%), Positives = 208/664 (31%), Gaps = 124/664 (18%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS--LTLA 130
           F        K ++   + K++    E++   Q +  + ++         S  A      A
Sbjct: 116 FSLFDPEDAKALLRDLMQKEADTDAEQINAVQGQISQWKNDLVLPGQAISHAADEDTQYA 175

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y    K    +DF+DLI+    LL+    +     +  ++I ++L+DE QDT++
Sbjct: 176 ARVYEAYSRHLKAYNAVDFDDLILLPVVLLRDNPDA---LARWRRKIQYMLVDEYQDTNV 232

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+++++ L  +            T   VGD+ QSIY++ GA P+ ++       +    
Sbjct: 233 SQYQLVKLLMAE----------RATFTVVGDDDQSIYAWRGARPENLVTLGEDFPR---- 278

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++I+L  ++RST  IL   + +     +    +  S                   
Sbjct: 279 ----LNVIKLEQNYRSTGTILRAANTLIGNNPHVYEKTLWS------------------- 315

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                           E        +         A R+A  I          +   K  
Sbjct: 316 ----------------EMGQGDAIRVIVNRHEEAEAERVASEI---------LTRRIKER 350

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + +D  VL R      L+    +     Y+I    +          IKD MA  R +++
Sbjct: 351 AEWRDFAVLYRGNFQARLLELKLQ----HYQIPYKLSGGTSFFSRNEIKDAMAYLRLLIN 406

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQH 483
             DD +F+ ++  P        + K+         +++    +           + +   
Sbjct: 407 PGDDNAFLRIVNVPRREVGPGTLEKLANYATERQVSLFAACHEIGLEQVLPTRAVERLSR 466

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-----ISRFGNEVIDVLDEFLNFTLR 538
              +I  +               +L                      +  +   ++   +
Sbjct: 467 FTHFIDGVRRRMDQGDAIAAIRDMLREMDYEAWLFQNASAPTIAERRMANVWTLIDQLEK 526

Query: 539 NEQN------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           + Q           ++  IS L       ++A   + + V+++T+H +KGLE P V+L+ 
Sbjct: 527 SMQRDDDDADETDDVESAISRLVLRDILEQQAEEDDSDRVQLLTMHASKGLEFPHVYLMG 586

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
              ++  H                                      ++  T EE  RL Y
Sbjct: 587 LEEELLPH-----------------------------------RNAIEAGTIEEERRLAY 611

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA   L +          +    T    + +   +D   +         K +    
Sbjct: 612 VGITRARRTLTLTLARQRKAYGELLDCTPSRFLEELPPDDLEWEGRADKEDPEKKQARGK 671

Query: 713 EWST 716
           +   
Sbjct: 672 DAIA 675


>gi|152978852|ref|YP_001344481.1| exodeoxyribonuclease V, beta subunit [Actinobacillus succinogenes
            130Z]
 gi|150840575|gb|ABR74546.1| exodeoxyribonuclease V, beta subunit [Actinobacillus succinogenes
            130Z]
          Length = 1227

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 146/1059 (13%), Positives = 307/1059 (28%), Gaps = 190/1059 (17%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKY----VSLSMETGNPTILKKA--QTLQQAS 57
               L+ +++     K  W   + ++S + +      S+            A    +Q  +
Sbjct: 243  AVHLAGSDNIPDELKSAWTDNFAEISALFEANYAGASVFNGNKFKRDYFIARTAKIQAWA 302

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
             ++  +    L    + TQ +      + +     S    + L + +      + +    
Sbjct: 303  DSERRDIPDELW---YFTQDYL--NGAVLKGKTAFSHPFFDYLAEQKARIEAAQTQL--- 354

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                  +      + LN      K+ +    F+DL+    + L+  +    +   I  + 
Sbjct: 355  -DLDEKILLFHYLRTLNERLSAYKRHHPEKSFDDLLRLLKNALQ-SERGEQLATFIRHQY 412

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               ++DE QDT   Q+++  ++          +        +GD KQ+IY F GA+    
Sbjct: 413  PFAMVDEFQDTDEQQYQIFSAIY--------VNRPDCGFMMIGDPKQAIYQFRGADIFTY 464

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L+  +           +     L  ++RS   ++  V+ +F  P             IR 
Sbjct: 465  LKAAKD---------AEQERFTLSKNYRSDGSLIRAVNGLFDFPAAFM------YDDIRF 509

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                 G+     +W        +                    S    A   A  I   +
Sbjct: 510  EPVAAGKDQAHFVWRGAQQAPMAFYLG----------------SREQAAEYCADNIRQWL 553

Query: 358  GT----------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
             +          DT   NG+   ++ ++I VLVRK  D      +   L+     SV  +
Sbjct: 554  TSADENQAGFVMDTAQDNGRNLRLRPENIAVLVRKGSDA---EKIKSALQRRGIASVYLS 610

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            DR  + D    ++L  +    L+   +   +  L + +F FS   + +I  Q    +   
Sbjct: 611  DRTNVFDCAEARELAFILAACLNPFSERHIMNALATGIFAFSMAQLQQIKRQAELLDGWM 670

Query: 468  EYIQKFANCGISKFQHVIKYIHE-LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
               + +        Q V+  +H   +   +     D    I       ++          
Sbjct: 671  TRFEDYQRIWRR--QGVLPMLHRIFLDKGKRGEQADIVGQIAAQANAERRLTDLL----- 723

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLE 584
              L E L       ++  + L     +++        +    +  N V+I+T+H +KGLE
Sbjct: 724  -HLAELLQEAAVLHESESALLSWFERQIQGKDRQAEQQVRLESERNLVKIVTIHKSKGLE 782

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              +V+L   G   F     +    +    D   +     + +  +           K   
Sbjct: 783  YDLVWLPFLG---FDDVKNRDEISIFHDKDAEALWDMNARHQDISA----------KEKL 829

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE--RVKKIKLTN 702
             E  RLLYV +TRA  Q+ +   +    +K+S     +  +      D      K +   
Sbjct: 830  AEEMRLLYVALTRAKYQVAMALPAEFGGKKESYWNPVWYALSRGEIGDGMKITGKAEKQT 889

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS----------------- 745
            ++     +  E  T       +  ++ + Q   E  +    F+                 
Sbjct: 890  AVLLSAHLEAENYTLETIPETVSGDKWLPQTNAEVSLSAATFTGKIEQNWGVTSFTALSR 949

Query: 746  ----------------------PIKNDINEPYILNPSTIDT----KGKTNLESLLSDNQT 779
                                     +   +  + +P+  +     +      S L+    
Sbjct: 950  MHEQNRRFHGEESAVEFTAIFDDALDYDEQQDVFSPTDEEANALWRNLPAEYSPLALKGG 1009

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---- 835
               G+I+H+  +        +                     + L + +  +L  P    
Sbjct: 1010 AKFGVILHRFFEKHDFSQPIED---AELLALCQGLQLDETWIQPLKMWLEAVLTTPLSAG 1066

Query: 836  -MMTTAMSCDSYSEVSVSGKIN------------------------CPKKDIIISGRIDQ 870
              +T         E+     ++                              ++ G ID 
Sbjct: 1067 FKLTDIRPQHCLKEMQFYLNLDRTFDVKAFNLLLRQYHPLYQQPYLLDDIRGMLRGFIDL 1126

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIP-----YTHIAQLSIYEKI----LKDSYPNKSLV 921
            +       ++ +YKT+       E I      + +  Q  +Y       L+   P     
Sbjct: 1127 VYRHDGKYYLLDYKTNLLPAYSEERIRTDIQQHYYDLQYLLYSLALHCFLQRRLPAYDYE 1186

Query: 922  CLL-----IYVS-------EPKVFIIPQNKLNKAFAEIS 948
                     YV               P  +L +   E+ 
Sbjct: 1187 THFGGVIYAYVRGMDGSGKTGVFTTRPAARLIRGLEELL 1225


>gi|283834549|ref|ZP_06354290.1| ATP-dependent DNA helicase Rep [Citrobacter youngae ATCC 29220]
 gi|291069679|gb|EFE07788.1| ATP-dependent DNA helicase Rep [Citrobacter youngae ATCC 29220]
          Length = 673

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 101/647 (15%), Positives = 207/647 (31%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    +          K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKLILQQLISTISNWKNDLMTPAQAAASAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------KRARFTVVGDDDQSIYSWRGARPQNLVLLSKDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +++L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVVKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLSNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGSATLQKLGEWAMTRNKSLFTASFDMGLSQTLTGRGYDSLTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    I       +   S    E  +  ++    +        
Sbjct: 460 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNTLFGWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E     +L ++++         +       ++V++MT+H +KGLE P VF+V        
Sbjct: 520 ELEEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVFMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +LI           +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELIFTLCKERRQYGELVRPEPSRFLLELPQDDVIWEQERKVVSAEE 651


>gi|327327273|gb|EGE69049.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
            HL103PA1]
          Length = 1078

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/865 (14%), Positives = 246/865 (28%), Gaps = 140/865 (16%)

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            +        K   V  F+DLI +    L+           +      +++DE QDT  +Q
Sbjct: 208  VREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQ 267

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            WE++R                  L+ +GD KQSIY+F GA+        +          
Sbjct: 268  WEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ---------- 307

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGTVQL 310
                ++ L +++R+   I+  V+ +FS  +   G+S +  +      R       G    
Sbjct: 308  SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHGISMELVTAHHQESRIKTATTDGPRYH 367

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            W Q       Q     +  T+  D    E         +   I  + G   +      R 
Sbjct: 368  WSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDGLRP 420

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++  DI +LVR R+    +               V +    +    A +DLM L   + +
Sbjct: 421  LRPNDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLMTLLEALEN 476

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              D+     +  S L   +  D+    ++      +              +  V   +H 
Sbjct: 477  -TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAVLHR 535

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                            ++    G +             +             + ++   +
Sbjct: 536  ----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATAAWI 580

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    +  
Sbjct: 581  REQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWH 640

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
               D     + I    +  +I    ++  ++  + E  RLLYV +TRA   + +      
Sbjct: 641  ---DGQRRVLDISSQGTDRSI---AVESREEDERGENLRLLYVALTRARSAVRLWWSPCP 694

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++     +  +V       E    +  T+        +   +T            ++
Sbjct: 695  ---RRHRWSAFQRLVEMDRTTGELGLGVAGTDPGTLPWLNSGPIATVIAPTNQKLLTRSV 751

Query: 731  KQLMDEQKIPKKLFSPIKNDINEP----------YILNPSTIDTKGKTNLESLLSDNQT- 779
                     P+ L  P+                   ++ S  +      ++    D+   
Sbjct: 752  SAQARACVAPRTLTRPLDTAFARTSYSGLTANLHAAVSESMTNNLIDEPVDDESVDDTAP 811

Query: 780  --------FNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLSITR 830
                     + G ++H +L+ I T         +  +         P      L  S+ +
Sbjct: 812  GLCGLPGGTSFGTLVHTVLEYIDTAATDLSSEVLSITRRALRMSPLPDVPPSELATSLEQ 871

Query: 831  LLENPM--------MTTAMSCDSYSEVSVSGKIN-------------------------- 856
            +L + +        +      D  +E++    +                           
Sbjct: 872  VLHSDLGPLAPGMTLADFSPADRLAEMNFELAMTQHGRSTTMTDLASLLCDPSLVPPDDP 931

Query: 857  ----------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQE--------- 892
                       P  D  + G     ID +         + +YKT+               
Sbjct: 932  ISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDA 991

Query: 893  ----IEHIPYTHIAQLSIYEKILKD 913
                       +  Q  +Y   L  
Sbjct: 992  HTMRAIMFSSHYPLQGLLYSAALHR 1016


>gi|313678484|ref|YP_004056224.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45]
 gi|312950464|gb|ADR25059.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45]
          Length = 734

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/548 (18%), Positives = 169/548 (30%), Gaps = 118/548 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y    +    LDF+DL+I  N+L  K      I  K   + ++IL+DE QDTS IQ
Sbjct: 192 IYNLYNNQLRTLQSLDFDDLLIKVNELFYKN---TEIVKKWALKYSYILVDEFQDTSAIQ 248

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+I+ L+          S    L  VGD  Q+IY + GA+   +L  ++  +       
Sbjct: 249 YEIIKYLS----------SQKAQLTIVGDPDQTIYRWRGADVNLILSFEKDFEN------ 292

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RST  IL   + +     N    +                        
Sbjct: 293 --TKTIILSKNYRSTKKILEAANNLIKYNHNRFNKNLV---------------------- 328

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                     +  +  +   F    +        R +   I+++              IQ
Sbjct: 329 ------TDNYDGAEIEYIHAFSPEAE-------VRWVVQKINDLKKQ----------KIQ 365

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K+I +  R    +          K    I+              IKD +A  R I    
Sbjct: 366 LKNIAIFYRSNSYSRNFEEQLMNEK----INYKIFGGEKFYQRKEIKDALAFLRVIYDGN 421

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D L    ++  P     E  + KI    +E               +   + VI  I+ L+
Sbjct: 422 D-LQLKRIINVPPRKVGEASLNKIINFANEKNLSLYKTLVTHYKNLPVSKEVIINIYALL 480

Query: 493 H--------IAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRNEQN 542
           +        + Q    H      L      +             + +   L      E  
Sbjct: 481 NCINKYKAALLQGNKIHVVLESFLKEIGFLKYISDDVGLKGTGEENIRALLEGIKSWEIT 540

Query: 543 SY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +    L+E    +     +       + + V +MTVH AKGLE   VFLV     +F + 
Sbjct: 541 NPKKGLKEYFEYISLISASDSTD--ESMSYVSLMTVHAAKGLEFDNVFLVGMCENIFPNY 598

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              K+                                      EE  RL YV +TRA ++
Sbjct: 599 RAYKVP----------------------------------EAMEEERRLAYVAITRAKEK 624

Query: 662 LIICKHSN 669
           L +     
Sbjct: 625 LFVSDSRG 632


>gi|291615695|ref|YP_003518437.1| Rep [Pantoea ananatis LMG 20103]
 gi|291150725|gb|ADD75309.1| Rep [Pantoea ananatis LMG 20103]
 gi|327395960|dbj|BAK13382.1| ATP-dependent DNA helicase Rep [Pantoea ananatis AJ13355]
          Length = 702

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 98/647 (15%), Positives = 216/647 (33%), Gaps = 123/647 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K++ ++ + +    L++ +    +    + D      + +S      +  +  A
Sbjct: 141 DQMALLKDLTSEWLEEDKTLLQQLISTISNWKNDLVDPPQAAALARSERD--NVFAHCYA 198

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+   K   VLDF+DLI+    LL++      +R +  Q I ++L+DE QDT+  Q+E+
Sbjct: 199 LYDRHLKSCNVLDFDDLILLPTLLLQRN---QDVRERWQQRIRYLLVDEYQDTNTSQYEL 255

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++                 
Sbjct: 256 VKLLVG----------TRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPA--------L 297

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +++L  ++RS+  IL   + + +   +       S   +                    
Sbjct: 298 EVVKLEQNYRSSQRILKAANILIANNPHVFEKRLFSELGLGSEL---------------- 341

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                               +   +S    A R+         T  + ++      Q KD
Sbjct: 342 -------------------KVLSANSEEHEAERV---------TGELIAHHFINKTQYKD 373

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + +            +I    +          IKDL+A  R + + +DD 
Sbjct: 374 YAILYRGNHQSRVFEKFL----MQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPDDDS 429

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++               G+   Q    ++
Sbjct: 430 AFLRIVNTPRREIGPATLQKLGEWANIRNKSLFNASFDVGLGQTLTGRGLEHLQRFTHWL 489

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRN---- 539
           +++I +++    +     ++             G        +  ++    +        
Sbjct: 490 NDIIQLSEREPVNA-VRDLIRGIDYESWLFETSGSPKAAEMRMKNVNTLFQWMTEMLEGS 548

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  
Sbjct: 549 DLDEPMTLAQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLP 608

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       ++  EE  RL YVG+TRA 
Sbjct: 609 HQSSID-----------------------------------ENNIEEERRLAYVGITRAQ 633

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   +  +   S  +
Sbjct: 634 KELTFTLCRERRQYGELIRPEPSRFLLELPQDDVVWETERKVVSAEE 680


>gi|117926757|ref|YP_867374.1| ATP-dependent DNA helicase Rep [Magnetococcus sp. MC-1]
 gi|117610513|gb|ABK45968.1| ATP-dependent DNA helicase, Rep family [Magnetococcus sp. MC-1]
          Length = 673

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/634 (19%), Positives = 206/634 (32%), Gaps = 129/634 (20%)

Query: 50  AQTLQQASQTQCIEERFSLL----SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105
           A+ L+Q +     E  F++L          +              K+      + K    
Sbjct: 98  ARMLRQYADRLGFERDFTILDSSDQERLFKRLCEELGFADAYWTPKRLTHTIGRWKDDGI 157

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
               + DR    K ++         + +   Y++A  ++  +DF DL+++   L ++   
Sbjct: 158 RPQDLTDR-EIRKAWERAR-----IQQMYERYQQALLQSNAMDFGDLLLHCLQLWQQEPA 211

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              I     Q   ++L+DE QDT+ +Q+  I +L+             + L  VGD+ QS
Sbjct: 212 ---ILAAFQQRFRYLLVDEYQDTNHVQYRWICALSGL----------HQNLCVVGDDDQS 258

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IYS+ GA  + +L+ +    +          II L  ++RS+ +IL     + +  +   
Sbjct: 259 IYSWRGARIENILKFEEDFPQ--------TKIIRLEQNYRSSGNILKAASGLINHNKGRM 310

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                                  QLW       +         + +  D           
Sbjct: 311 EK---------------------QLW------TEDAQGDAIHFYQAENDEDE-------- 335

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           AR +A  I  +                 +   +LVR  + T  +            I   
Sbjct: 336 ARFVASEILTLCPAG-----------DYQQAAILVRTARQTRSLEEGL----MRAGIPYQ 380

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                   D   ++D +A  R + S  DD++F  ++  P        +  +     +   
Sbjct: 381 VVGGLRFLDRAEVRDALAYLRVVASNRDDVAFERVINLPKRGIGPGALQSLREIASQERC 440

Query: 466 VYEYIQKFANC-------GISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQF 517
              +  +FA                 I+ I     + A   +P +  T +L     R   
Sbjct: 441 SLLHAARFAVESNTMKGAAAKGLAAFIQLIEHARSMLADDITPAEMLTKLLALSGYRDYV 500

Query: 518 IS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                GN+ ID LDE  N   R E     SLQ  + E+     T  +      N V I T
Sbjct: 501 RDLEKGNDRIDNLDELRNALARTE-----SLQLFLEEVALA--TDLQDGGPVANRVVIST 553

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE P VFLV     V  HK                                  +
Sbjct: 554 LHAAKGLEFPWVFLVGVEEDVMPHK--------------------------------LAL 581

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
               +   EE  RL YVGMTRA  +L +      
Sbjct: 582 TEQPEIGLEEERRLAYVGMTRAKQRLYLTMARRR 615


>gi|320178069|gb|EFW53049.1| ATP-dependent DNA helicase Rep [Shigella boydii ATCC 9905]
          Length = 673

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 98/647 (15%), Positives = 211/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        ++++            +  G         +
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLDEFLNFTLRN---- 539
           + E+  +A+         LI G       + +    +  +     +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYEFWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|315092772|gb|EFT64748.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL060PA1]
          Length = 1078

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 124/865 (14%), Positives = 247/865 (28%), Gaps = 140/865 (16%)

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            +        K   V  F+DLI +    L+           +      +++DE QDT  +Q
Sbjct: 208  VREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQ 267

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            WE++R                  L+ +GD KQSIY+F GA+        +          
Sbjct: 268  WEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ---------- 307

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGTVQL 310
                ++ L +++R+   I+  V+ +FS  +   G+S +  +      R       G    
Sbjct: 308  SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHGISMELVTAHHQESRIKTATTDGPRYH 367

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            W Q       Q     +  T+  D    E         +   I  + G   +    + R 
Sbjct: 368  WSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDRLRP 420

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++  DI +LVR R+    +               V +    +    A +DLM L   + +
Sbjct: 421  LRPNDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLMTLLEALEN 476

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              D+     +  S L   +  D+    ++      +              +  V   +H 
Sbjct: 477  -TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAVLHR 535

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                            ++    G +             +             + ++   +
Sbjct: 536  ----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATAAWI 580

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    +  
Sbjct: 581  REQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWH 640

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
               D     + I    +  +I    ++  ++  + E  RLLYV +TRA   + +      
Sbjct: 641  ---DGQRRVLDISSQGTDRSI---AVESHEEDERGENLRLLYVALTRARSAVRLWWSPCP 694

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++     +  +V       E    +  T+        +   +T            ++
Sbjct: 695  ---RRHRWSAFQRLVEMDRTTGELGLGVAGTDPGTLPWLNSGPIATVIAPTNQKLLTRSV 751

Query: 731  KQLMDEQKIPKKLFSPIKNDINEP----------YILNPSTIDTKGKTNLESLLSDNQT- 779
                     P+ L  P+                   ++ S  +      ++    D+   
Sbjct: 752  SAQARACVAPRTLTRPLDTAFARTSYSGLTANLHAAVSESMTNNLIDEPVDDESVDDTAP 811

Query: 780  --------FNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLSITR 830
                     + G ++H +L+ I T         +  +         P      L  S+ +
Sbjct: 812  GLCGLPGGTSFGTLVHTVLEYIDTAATDLSSEVLSITRRALRMSPLPDVPPSELATSLEQ 871

Query: 831  LLENPM--------MTTAMSCDSYSEVSVSGKIN-------------------------- 856
            +L + +        +      D  +E++    +                           
Sbjct: 872  VLHSDLGPLAPGMTLADFSPADRLAEMNFELAMTQHGRSTTMTDLASLLCDPSLVPPDDP 931

Query: 857  ----------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQE--------- 892
                       P  D  + G     ID +         + +YKT+               
Sbjct: 932  ISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDA 991

Query: 893  ----IEHIPYTHIAQLSIYEKILKD 913
                       +  Q  +Y   L  
Sbjct: 992  HTMRAIMFSSHYPLQGLLYSAALHR 1016


>gi|256827426|ref|YP_003151385.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641]
 gi|256583569|gb|ACU94703.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641]
          Length = 841

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/566 (13%), Positives = 164/566 (28%), Gaps = 95/566 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+    +    V+                + ++   L   +        
Sbjct: 28  GAGSGKTRVLTYRIAHMIEDLGVAPWEILAITFTNKAAAEMRERLGALVGPAARGMWVST 87

Query: 66  FSLL---------SSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F  +              T+ FT   +  ++ + K      +       +   ++     
Sbjct: 88  FHSMCVRILRANAEVIGFTKNFTIYADDDSKRLIKDIMAQLDIDPKRFPVNALRNRISSA 147

Query: 111 RDRFNTYKMF--KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++       F  +++     +A  +    ++   +    DF+DL++ T  L K       
Sbjct: 148 KNELILPDAFDQRASDPIALVAARVYHELQKRLHQANAFDFDDLLMYTWLLFKHHP---N 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     +   ++L+DE QDT+  Q+ +   L              + +  VGD+ QSIYS
Sbjct: 205 VLEAYQERFRYLLVDEYQDTNHAQYAITTLLAA----------RHKNIMVVGDDDQSIYS 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++   +           ++L  ++RSTA IL   + V +   N +   
Sbjct: 255 WRGADIRNILEFEQDYPQ--------TRTVKLEKNYRSTATILDAANAVIAHNVNRKSKR 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
              T                                 +       D   +        R 
Sbjct: 307 LVPT----------------------------GDTGDKIHVYMASDERDEG-------RW 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I       T              I +  R    + ++  +         +      
Sbjct: 332 IAGEIERRHTQGT----------SYNQIALFYRTNAQSRMLEDML----LRAGVPYRIVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                D   I+D+MA    +++  DD++   ++  P     +  I  I         T  
Sbjct: 378 GTRFFDRAEIRDVMAYLTLVVNPADDMAAKRVINVPRRGIGKTTIELIDACAARNNCTFL 437

Query: 468 EYIQKFANCGISKF--QHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGN 523
           E  Q        +   +  +     L+  A            +IL      +   +   +
Sbjct: 438 EAAQLTIADESVRLSTRTALGQFTSLLSEAATWTGELRRIVEMILERSGMVRALENSGTD 497

Query: 524 E---VIDVLDEFLNFTLRNEQNSYSS 546
           E    ++ + EFL           + 
Sbjct: 498 EDLGRVENIKEFLGVVDEFTATHDAD 523


>gi|218701309|ref|YP_002408938.1| ATP-dependent DNA helicase Rep [Escherichia coli IAI39]
 gi|218371295|emb|CAR19128.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli IAI39]
          Length = 673

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHE----------TETVYEYIQKFANCGISKFQHV 484
            +F+ ++ +P        + K+                   + + + +     +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSRRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELMRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|156935891|ref|YP_001439807.1| ATP-dependent DNA helicase Rep [Cronobacter sakazakii ATCC BAA-894]
 gi|156534145|gb|ABU78971.1| hypothetical protein ESA_03779 [Cronobacter sakazakii ATCC BAA-894]
          Length = 673

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 92/588 (15%), Positives = 195/588 (33%), Gaps = 123/588 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +  +  + Y+   K   VLDF+DLI+    LL++ +    +R +    I ++L+DE QD
Sbjct: 162 RIFAHCYSLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNRIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L            S      VGD+ QSIYS+ GA P+ ++   +     
Sbjct: 219 TNTSQYELVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +       S                
Sbjct: 268 -------LQVIKLEQNYRSSGRILKAANILIANNPHVFEKKLFS---------------- 304

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                              E        +   +     A R+         T  + ++  
Sbjct: 305 -------------------ELGYGTELKVLTANHEDHEAERV---------TGELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q KD  +L R    + +   +        +I    +          IKDL+A  R 
Sbjct: 337 INKTQYKDYAILYRGNHQSRVFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + + +DD +F+ ++ +P        + K+        ++++               G   
Sbjct: 393 LTNPDDDSAFLRIVNTPKREIGPATLQKLGEWANQRNKSLFTASFDMGLAQTLTGRGYES 452

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNF 535
                 ++ E+  +++          ++                +     +  +++  ++
Sbjct: 453 LTRFTSWLQEVAVLSEREPVAA-VRDLIRGIDYEAWLFETSPSPKAAEMRMKNVNQLFSW 511

Query: 536 TLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                   + +   +L ++++         +       ++V++MT+H +KGLE P VFLV
Sbjct: 512 MTEMLEGTDLDEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLV 571

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  H+                                       +   +E  RL 
Sbjct: 572 GMEEGLLPHQSSID-----------------------------------EDNIDEERRLA 596

Query: 652 YVGMTRASDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           YVG+TRA  +L   +CK      E    + + + +           ++
Sbjct: 597 YVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLHWETER 644


>gi|256021480|ref|ZP_05435345.1| ATP-dependent DNA helicase Rep [Shigella sp. D9]
 gi|332105066|gb|EGJ08412.1| DNA helicase and single-stranded DNA-dependent ATPase [Shigella sp.
           D9]
          Length = 673

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 98/647 (15%), Positives = 209/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        +  +        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKTLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|163854653|ref|YP_001628951.1| ATP-dependent DNA helicase [Bordetella petrii DSM 12804]
 gi|163258381|emb|CAP40680.1| ATP-dependent DNA helicase [Bordetella petrii]
          Length = 685

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 101/637 (15%), Positives = 204/637 (32%), Gaps = 115/637 (18%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLII 154
           + +L+  Q      ++          T A+     A  +  +Y         +DF+DLI 
Sbjct: 134 RGRLRAVQSIISLWKNALLGPDDAARTAATPGEVEAANVYRNYSATLAAYQAVDFDDLIR 193

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL+  +    +R +    + ++L+DE QDT++ Q+ +++ L  D            
Sbjct: 194 IPAQLLENNEE---VRTRWQNRVRYLLVDEYQDTNVCQYRLVQLLCGD----------RA 240

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ Q+IY++ GA  + + +      +          +I+L  ++RS   IL   
Sbjct: 241 MFTAVGDDDQAIYAWRGATIENLAKLTTDYPQ--------LKLIKLEQNYRSVQRILAAA 292

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + V                                LW  +        +P +        
Sbjct: 293 NTVIEKNPKLFEKK---------------------LWSDLGVGEPIVVSPMEND------ 325

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                      A+ IA  IS             +R  Q +D  +L R    + ++    R
Sbjct: 326 --------EHEAQSIAMKISA---------ARFERQAQWRDFAILYRGNHQSRILEQALR 368

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            LK    I           D   ++D++A  R I + +DD +F+    +P     +  + 
Sbjct: 369 NLK----IPYTIAGGQSFFDKAEVRDILAYLRLIANDDDDPAFIRAATTPRRGIGQATLQ 424

Query: 455 KI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQF---------C 498
            +         ++   + +           +   +   ++I  +   A            
Sbjct: 425 VLGQYAAQREVSLLAAVAESGLESLLQPRQLDSLRTFAEFIRRIQWRAGRGRTDGAGSAE 484

Query: 499 SPHDFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                   +LGA +  +               + + E   +  R       SL +L+  +
Sbjct: 485 PAGAILDDMLGAIQYERYLYDTLEEKPAQTRWENVLELTGWLKRKADEDGMSLFDLVQHV 544

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                  +       + V++ T+H +KGLE P V+L      +  H              
Sbjct: 545 ALITMLERGE-EEEPDAVKLSTLHASKGLEYPHVYLAGVEEGLLPH-------------- 589

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                      K   +           +  +E  RL+YVG+TRA   L +         +
Sbjct: 590 ---------LGKDDEDGDPARAAESLATRIQEERRLMYVGITRAQRSLNLSWCKKRRRAR 640

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +   R     + +    D  +++ + T +++  E + 
Sbjct: 641 EDMVREPSRFIEEMGLGDVAIQEDEATKAMSPKERLG 677


>gi|221069391|ref|ZP_03545496.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1]
 gi|220714414|gb|EED69782.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1]
          Length = 1270

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 134/987 (13%), Positives = 282/987 (28%), Gaps = 147/987 (14%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            E  + +              +        E      L   + LQ A          +  +
Sbjct: 237  ERAQRLQALADGWEAKAERMLRWIEG---ELDGRAALWDRRKLQ-ARYYTGWFAALTAWA 292

Query: 71   SFFLTQKFTP----QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
               L Q        +K +  + + +        L     EF ++           S   +
Sbjct: 293  QDPLNQPLELSDSARKRLCPEGMAEAFKGSTMDLL-LPTEFSELEQLLKALTGLPSIKVA 351

Query: 127  LTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            L L  A ++       K++     F D++   +  L   +  A +R  I  +    LIDE
Sbjct: 352  LRLHAAVHVQQRLLWLKRQAGTFGFADMLQRLDTALAGDNGPA-LRAGILAQYPVALIDE 410

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDTS +Q+ +   +          +S+   L  +GD KQSIY F GA+    L+ ++  
Sbjct: 411  FQDTSPLQYRLFDQIYR-----TADNSTDSALLLIGDPKQSIYGFRGADIYSYLQARQA- 464

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                     +     L  +FRST  ++  V++ F   E  +G         +        
Sbjct: 465  --------TEGRHYVLDTNFRSTQALVDAVNQWFVQAEVREGEGAFLFRAGQSNPLPFES 516

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI---GTDT 361
            V +    E+++               S  + L  +      A   A  I   +    T  
Sbjct: 517  VKSNGRKERLMQGSQRMAALTVAWDGSSGEPLSNDDIRRRGAEFCASQIVQWLMDGATGF 576

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                   + ++  D+ VLVR  K+   +    R L      SV  +D+  +      +DL
Sbjct: 577  AEDGQPLQRLRPADVAVLVRTGKEATAVR---RALARRNVASVYLSDQDSVFASGEAQDL 633

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            +   R + +  D L+    L +P+   S D++  + +         +      +  + + 
Sbjct: 634  LLWLRAVAAPLDALAVRAGLATPMMGLSFDELAWLASD--------DEAFDARSELLKEL 685

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              +   +  L  + Q     +     L    G ++  +         L E L       +
Sbjct: 686  HSLWLRLGVLAMLRQTLYRFELPARWLQDMGGERRLTNYL------HLAELLQGASAQLE 739

Query: 542  NSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
               + ++ L +++E              ++ + V+++TVH +KGLE P+V L   GS   
Sbjct: 740  GEQALIRWLATQIESPGAAGDAQIVRLESDADLVKVVTVHKSKGLEYPLVCLPFGGSFRP 799

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                   + +   ++         P  +   +     +    K    E  RLLYV +TR 
Sbjct: 800  VDGKAAYLSLPVQIDG-------APARELVLDYDDAQLAQADKERLREDLRLLYVALTRP 852

Query: 659  SDQLIICKHSNTSNEKK------------------SNQRTWYDMVYDSFHNDERVKKIKL 700
               L +          K                   +   W   +         +  + L
Sbjct: 853  RHALWMGLAPMKRGSSKNCANEQGAAGYLLAGAVSQSAAGWRASIQALSERCTEIAVVDL 912

Query: 701  TNSIN------------------------KDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
               +                            W    +S+                    
Sbjct: 913  PAELPVASRYVAAQALPALAAAPVYEAQFDRRWGIGSFSSLTRAMAAPSLPVLPVAAQSP 972

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN---------RGLIIH 787
             +  + L +    +      +    +      +  +  + +              G  +H
Sbjct: 973  AEDERALQAQEAGEAALDLGVINDVMTALPTLSRFAAGARSDAAVWHRFMRGPVVGNFLH 1032

Query: 788  KLLQVIF--------TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--- 836
              L+ +                +        +  +    ++  ++L  +  ++  P+   
Sbjct: 1033 DQLEWLAAEDFALQAQDDPDNSEPLAARLLRRCERAGRKEQAADVLQWLRAVVHQPLAPL 1092

Query: 837  ---MTTAMSCDSY-SEVSVSGK-------------------------INCPKKDIIISGR 867
               +      D+   E+                              +   +   ++ G 
Sbjct: 1093 GVSLAQLGEGDALLPEMEFWLPARRLSAPHIDALCRRHILPGQPRPALPERELHGMLMGF 1152

Query: 868  IDQISISQQNIFIFEYKTHHHVPQEIE 894
             D +       ++ +YKT+H       
Sbjct: 1153 ADLVFHHAGRYWVLDYKTNHLGQDAAA 1179


>gi|26991357|ref|NP_746782.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida KT2440]
 gi|24986421|gb|AAN70246.1|AE016664_2 exodeoxyribonuclease V, beta subunit [Pseudomonas putida KT2440]
          Length = 1224

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 136/1046 (13%), Positives = 293/1046 (28%), Gaps = 155/1046 (14%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK-KAQTLQQASQTQC 61
                 +  +        +         ++ +    ++        K +A+  +      C
Sbjct: 215  AALIQASLQQRGAQLARIKAPWAQWAEELRQICRDALAAKQVDGRKMQARYFEPWFDKLC 274

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                   L    L   FT        E  K  P     L   Q    +++   +      
Sbjct: 275  AWASDEQLVELDLGTGFTRLTPAGMAEAWKGEPPEHPALNAMQHLQQQLQALDSPDAPL- 333

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                    A +++A +E  K++   + F+D+++     L   +    +   I ++    L
Sbjct: 334  ----LEHAASWVSARFEVEKRRRAEMGFDDMLVRLQHALA-SEAGERLASLIREQFPVAL 388

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT  +Q+ +   + +      + + +   LF +GD KQ+IY+F GA+    L  +
Sbjct: 389  IDEFQDTDPVQYGIFERIYQ-----ISENRAETGLFMIGDPKQAIYAFRGADIYTYLAAR 443

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG------LSEDSTTTI 295
            R              +  L  ++RS+  ++  V++VF   E  +         E     +
Sbjct: 444  RA---------TSGRLHSLDTNYRSSKAMVAAVNQVFLQAEAREAGRGAFLFREADDNPL 494

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                 R    G   L +  VS        + E      + +        +A   A  I  
Sbjct: 495  PFIEVRAKGRGEQLLIDGEVSAALQCWQLESE------EPVSSSVYRQQMAASCASHIVA 548

Query: 356  MIGTDT------IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            ++            + G+ R     DI +LVR   +  ++       +     SV  +D+
Sbjct: 549  LLNGGQQGTSGFRNAEGELRACLPSDIAILVRDGHEAQMVRAELAAREVR---SVYLSDK 605

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +       DL+A  +     + +      L S     S   + ++           E 
Sbjct: 606  DSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDRLNQD--------ER 657

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            + +        ++   +    L  +            ++    G +   +         L
Sbjct: 658  VWESWVMRFRLYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLL------HL 711

Query: 530  DEFLNFTLRNEQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             E L           + ++ L   L    Q          ++   V+++T+H +KGLE P
Sbjct: 712  AELLQQAAGELDGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYP 771

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V+L    +          +    S  +                   + I+        E
Sbjct: 772  LVYLPFICTSKPVDGSRLPLAWHDSEGNAHLTLTPD----------QEQIERADDERLAE 821

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---------------RTWYDMVYDSFHN 691
              RLLYV +TRA     +          KS+Q                     + D    
Sbjct: 822  DLRLLYVALTRAQHACWLGVADLKRGNLKSSQLHRSAFGYLLGGGLALAGSAQLTDWLQA 881

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----SPI 747
                        + + +   Y       E  P  R                L     +  
Sbjct: 882  LAASCPHITCPGLPQADEQMYRMPHAERELLPARRPRHAAAEHWWIASYSALRVGDQTLG 941

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR----GLIIHKLLQVIFTLPEHKRKN 803
             +      +L+    D +    + +   D   F R    G  +H LL+        +   
Sbjct: 942  ADSSQAQQLLDDEVPDAQVLREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFSEVSA 1001

Query: 804  ---------------------------FITSYCTKNAKLWPAKE-------YKNLLLS-- 827
                                       ++    ++   L  + +           +    
Sbjct: 1002 NPQLIERTVGQRCNRRDWAGWIPTLSHWMQRLLSEALPLPGSDQSVTLGQLRHYQIEMEF 1061

Query: 828  --ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
               +  ++   +   ++  ++  ++            +  G ID         ++ +YK+
Sbjct: 1062 WFASHRVDAEQLDRLVARHTHPGLARPAAQPTVLNG-MFKGFIDLAFELDGRYYVTDYKS 1120

Query: 886  HHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYP--------NKSLVCLL-IYV 927
            +              E   + + +  Q  +Y   L             ++ +   L I++
Sbjct: 1121 NWLGADIQAYDAMAMEKAILEHRYDLQYVLYLLALHRQLRARLADYDYDRHVGGALFIFL 1180

Query: 928  SE------PKVFIIPQNKLNKAFAEI 947
                          P  +L ++   +
Sbjct: 1181 RGASSSGHGVYHAKPPRELIESLDAL 1206


>gi|332184092|gb|AEE26346.1| ATP-dependent DNA helicase Rep [Francisella cf. novicida 3523]
          Length = 671

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/617 (16%), Positives = 197/617 (31%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    K        A ++   Y++  K     DF+DLI     L +  
Sbjct: 138 QTKISFWKSALLTPDQVKPKDELEEQAAFIYQEYQKYLKSYNSFDFDDLIFQPIQLFRSH 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT                  VGD+ 
Sbjct: 198 ---SNIQKLWADKFRYILIDEYQDTNESQYQLLKYLTL----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +               +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------ADLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW        ++   +Q    S  +   +     
Sbjct: 297 IFDKK---------------------LW-------SNKDYGEQIKVISLVNDEDE----- 323

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ IA  I         F +  K   +  D  VL+R      L+    +  K    I 
Sbjct: 324 --AQFIASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQMHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +          IKD+++  R I++ +DD +F+ ++ +P        I K+     + 
Sbjct: 369 YTISGGSSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATIHKLGEYASQH 428

Query: 464 ETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQ-FCSPHDF---FTLILGAKKG 513
              + +        +  +            I           S  +        +     
Sbjct: 429 HCSFFHTLYNLENFELRDFTKKNLVSFKDLILNTQQQINSSISIQELKNIINNFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N   SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANVIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         ++  + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +    D      +  
Sbjct: 634 IDELPETDLYWVGTEKE 650


>gi|322379132|ref|ZP_08053529.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
 gi|322380437|ref|ZP_08054639.1| ATP-dependent helicase [Helicobacter suis HS5]
 gi|321147148|gb|EFX41846.1| ATP-dependent helicase [Helicobacter suis HS5]
 gi|321148428|gb|EFX42931.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
          Length = 900

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 139/836 (16%), Positives = 258/836 (30%), Gaps = 142/836 (16%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           + E + +  ++     +   +   ++          +    Y+        LDF  + + 
Sbjct: 189 VLESILELLEKSGIYANSLPSKPQYEKEAIIFKDLAFFLDRYKAHLIYPNALDFATITLK 248

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              LL       +  +++D +I HILIDE QDTS +Q+++++ L E+   GK      R+
Sbjct: 249 VQQLLNNPFDMDFFYFRLDSQIRHILIDEFQDTSPLQYQILKPLIEEIKAGKGQKWGDRS 308

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +F VGD KQSIY F G++     R  + N  +            L  + RST  +L  V+
Sbjct: 309 VFFVGDSKQSIYRFRGSDSVLFERVCQENSSQ-----------SLKHNHRSTGAVLDFVN 357

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             F      + +      ++          G V++    V Q+              +  
Sbjct: 358 NTF-----LRVIEGYEPQSLPKNRLDYQDQGYVRIKTIKVGQYKQNS--------RSYGE 404

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             ++     + + +   I  ++             + A+DI +L    KD   +      
Sbjct: 405 KGEKEKNEAIFKGVLEEIEILLNGG----------VSAEDIAILCLNNKDVNGLKDFLIE 454

Query: 396 LKND----YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
            K +      + +V      L     +K L+   R  L   D  S+     S L      
Sbjct: 455 SKENNPLLQNVQIVSETDLRLLAQHEVKILIYALRCDLEP-DYQSYHLACISKLLG---- 509

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                          Y           +K  H+  YI +L+               L   
Sbjct: 510 ---------------YALDYPLQEKLPAKNSHLSTYILDLM-------------RALKLH 541

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
               Q+              FL  +L           +    LE       +  S+    
Sbjct: 542 GQSAQY--------------FLELSLNY--------HDKQEFLEYLEKEDIKIASSQKQG 579

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           ++IMT+H +KG+E   V L+D      + +       +   ++         + K  +  
Sbjct: 580 LQIMTIHKSKGMEFGHVILMD----RLASREQTDQDKLFVDSNGRVFYKAKDREKEVDPE 635

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               ++  +K  ++E    LYV  TRA + L         +   +N++            
Sbjct: 636 YKKALEAYQKENEKEKVNRLYVACTRAKEGL--SIVKKDGSRMGANKKPTSTESAFKIKI 693

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
             +   +   N   K+ W     S   P  TP      +                     
Sbjct: 694 GTKDLNLFPDNQERKEGWQPKTSSPQQPLKTPDRIPCLLLDQKAF--------------- 738

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
                          +   ESL +       G+ +HK L+  F          I +Y T 
Sbjct: 739 ---------GAQEDYQKPEESLKASKSARFFGIAMHKALE--FFYGYGVSLEIIKAYLTH 787

Query: 812 NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EVSVSGKINCPKKDIIISGRIDQ 870
                     + +L  +  L   P     +   S + E+S     +          R+D 
Sbjct: 788 YYS-LQGVSVEGVLKRLLALHNFPEFQNLLKQGSIATEISFKSHQSYM--------RLDM 838

Query: 871 ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
           +       +I ++K+              + AQ+  Y   L+  YP + +   LIY
Sbjct: 839 LIYKDTQFYILDHKSGKGS-------QKAYRAQVKNYATTLQKIYPKQEIKAYLIY 887


>gi|86135193|ref|ZP_01053775.1| UvrD/REP helicase [Polaribacter sp. MED152]
 gi|85822056|gb|EAQ43203.1| UvrD/REP helicase [Polaribacter sp. MED152]
          Length = 1047

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 134/928 (14%), Positives = 306/928 (32%), Gaps = 124/928 (13%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
                    E +  +   L+       +   K     +E  +   L++   ++        
Sbjct: 207  RELSKRKLEDFTDLKSKLYAHQQELKTSFTKIGEACLELIHAKGLEQKDFMRGTIPKFFA 266

Query: 63   EERFSLLSSFFLTQKFTPQKNI---------ITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            + +   ++  FLT+  T  K I          T  I +    +  ++    ++  +I  +
Sbjct: 267  DIKEKSVNFSFLTRSETIAKAIDNHQYYSKSTTDAIAQDIESIVPQIIAFYEQAKEIYSQ 326

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL---DFEDLIINTNDLLKKRDVSAWIR 170
            F   K+    L  L +   +N   E  K ++ +    +F  LI +          + +I 
Sbjct: 327  FLLNKLALKNLIPLAVLNNINQELESIKDESNIRLNSEFNQLISDNIK----EQPAPFIY 382

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +I Q   H  IDE+QDTS++QW+ +  L ++    +        L  VGD KQ+IY + 
Sbjct: 383  ERIGQRFQHYFIDEMQDTSVLQWQNLIPLIDNALAQE-----NSNLLLVGDGKQAIYRWR 437

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            G + ++ +      +   + +     +  L  ++RS ++++   +  F            
Sbjct: 438  GGKAEQFISLGASEENPFSISK---EVKHLETNYRSFSEVINFNNSFF------------ 482

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                 +H ++ +       L+ +  +Q +++      S         +E       +++ 
Sbjct: 483  -----QHTANFLQNESYKSLFLEGNTQLENKKKGGYVSLDFLEKEEEKEDEEIKYPKKVL 537

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              I  +                  +I VL R +KD   +           ++ +V ++  
Sbjct: 538  AHILALKNE-----------FALGEICVLTRTKKDGIAVANYLSE----NEVPIVSSETL 582

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
            +L     +  ++ + + I +  D  +   ML           + +      +  +  +  
Sbjct: 583  LLNTSTKVNFIVDVLKVIQNPSDQETRFEMLYF---------LHQHLNISADKTSFLKKY 633

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                N  I K       + + I        ++    I+           +        + 
Sbjct: 634  VALENHEIFKELEQYNVVFD-IGRFNQFPFYEKIEEIVRGF--------QLLETSDAYVQ 684

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             FL+  L  ++ S   +   +   E     +      + N V++MT+H +KGLE PVV  
Sbjct: 685  FFLDIVLEQQRKST-DINAFLDFWENKKDKLSIVAPESANAVQVMTIHKSKGLEFPVVIF 743

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR--NNIVSDLIKHLKKSTQEEYN 648
                      K    ++ +P    +    +     +    N     + +  ++  + +  
Sbjct: 744  PCDVEIYREIKPKAWLNDLPESFGEFKELLLPFNKELGQVNARGLQIYEQRREELELDNF 803

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
             LLYV +TRA +QL +      S +   N   +                + +   I ++ 
Sbjct: 804  NLLYVALTRAVEQLYVITEKRISAKGVENTNYY--------------SGVFINYLIQQNL 849

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
            W          +     R   + +     +  +K  S    + N   + + S +      
Sbjct: 850  WKDDCLHYSFGD---KNRVSQLIESESVAETHQKFISTSWQEHNVVLLASASKL------ 900

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                  +  +  + G + H++L  I    +      +  Y  +       ++ K +   I
Sbjct: 901  ---WNTAQGEAIDYGNLFHEILSKI--FTKSDVAPILNQYHQQ--GFIDDEQKKYMFQKI 953

Query: 829  TRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
              ++ +P + +  + D   Y+E  +         + I+    D++      + I +YKT 
Sbjct: 954  IEIVAHPELRSFYAKDVIIYNEREI-----VDVDNQIV--IPDRLIFKDDKVTIIDYKTG 1006

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                         H  QL  Y ++L+  
Sbjct: 1007 --------VASNNHKQQLLKYAQVLQSM 1026


>gi|152965140|ref|YP_001360924.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151359657|gb|ABS02660.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 1128

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 132/1069 (12%), Positives = 267/1069 (24%), Gaps = 197/1069 (18%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R G+    +        W L    V      +              A  L Q    +C E
Sbjct: 135  RLGVEPQSTVLS-DAGAWQLASDVVESWLGDLPGVE----AAPSTLAAALVQ-LAGECAE 188

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
                             +   + ++    +        +   +   +       K     
Sbjct: 189  HLVDPGELVSFVDDLETRVRALPKDDRSVAKLGAHVPGEPYAKVRDLLAVQRARKA---- 244

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                     L   Y   K+    LDF D ++    L ++      +          +L+D
Sbjct: 245  ------VVPLLEEYVRRKRDAEQLDFGDQVLLAARLARE---VPAVAAGERARHRVVLLD 295

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS  Q  ++R+L            +   + AVGD  QSIY + GA    + R    
Sbjct: 296  EYQDTSYAQLMLLRALFG----------AGHPVTAVGDPHQSIYGWRGASAGNLGRFPGH 345

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              +     G   + + L  S+R+       V    ++       +  +      R     
Sbjct: 346  FPR---ADGTPAARLPLATSWRND----EAVLAAANLVAAPLNAAPGAGAVAVLRPRPGA 398

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G V+       + ++     + +     DS                     +      
Sbjct: 399  GTGRVRAAFSATVEEEAAEVAARLAEVWRADS-------------------ERLAVQRRV 439

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                 R  +     VL RKR    ++    R    D  + V       L     + D++A
Sbjct: 440  PGADPRPRRTA--AVLCRKRSQFTVLQRALR----DAGLPVEVVGLGGLLTTPEVADVVA 493

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------------------- 461
                +           +L    +     D+  +                           
Sbjct: 494  TLHVLHDPARGDHLARLLTGARWRLGARDLAALGAWARHLQHRRAGLPPDPHEPGEEPLV 553

Query: 462  -----ETETVYEYIQKF-------------ANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                 E  ++ E +                +    ++   +   +  L +        D 
Sbjct: 554  LPDEVEAVSLVEALDDLPGAGWSGPDGRSLSPRAHARLSRLAAVLRRLRNRTH-LPVPDL 612

Query: 504  FTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
               +  A     +  +R G+       ++          +  +    L   ++ L+    
Sbjct: 613  VGEVERALLLDVEVAARPGSSPASARANLDALADAAASFSAGSQRPGLGGFLAWLDAAEV 672

Query: 560  TI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                  + A   + + V+++TVH +KGLE  VV +     + F          +      
Sbjct: 673  RERGLEQGASEVSTDAVQLLTVHASKGLEWDVVAVPGLVERTFPASGETDPGWLGGSGAL 732

Query: 616  PGIPIW---------------IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
              +P                     K  +      ++   +    E  RL YV  TRA +
Sbjct: 733  GVLPYPLRGDREGLPRFDVEGAGTQKELDTARQRFLEACGQHQLAEERRLAYVAFTRAKE 792

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHN-------------DERVKKIKLTNSINKD 707
            +L++         K      +   V ++                 E       T +  + 
Sbjct: 793  ELLLSGAHWDDAAKPREPSRFLREVLEAPRGAVPGLVVVPPAPAPEPGAPNPRTANPQRV 852

Query: 708  EWIAYEWSTHHPE-----------------------------NTPLEREETIKQLMDEQK 738
             W     ++   E                                ++ E           
Sbjct: 853  VWPVDPLASRRVEVAAGAALVRAAMAERAAGGAAGPEAGGPEGGAVDEETAAWAEQSRLL 912

Query: 739  IPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------LESLLSDNQTFNRGLIIHKLL 790
            + ++  +     +  P  L+ S + T  +                      RG   H  L
Sbjct: 913  LTERATAHDAPGVLLPAHLSASRLVTLAQDPDALALQLRRPVPQEPRPATRRGTAFHAWL 972

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
            +  FT         +                   L ++ R              +   V+
Sbjct: 973  EQRFTASS------LLDLVDLPGSADEDAADDAELEALQRRFLASEWA------ARDPVA 1020

Query: 851  VSGKINCPKKDIIISGRIDQIS-----ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
            V   +  P  D+++ GR+D +        +    + ++KT      E          QL+
Sbjct: 1021 VEVSVETPVADLVVRGRVDAVFAAVGADGRTRWDVVDWKTGRPPEGEAARARD---VQLA 1077

Query: 906  IYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
            +Y          P + +     Y S  +          +    +   +P
Sbjct: 1078 VYRLAWSRWRGVPLEDVSAAFFYASTGETVRPVDLLGAEDLERLVRSVP 1126


>gi|324111005|gb|EGC04992.1| ATP-dependent DNA helicase Rep [Escherichia fergusonii B253]
          Length = 673

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEEVDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 VWEQERKVVSAEE 651


>gi|315636579|ref|ZP_07891813.1| UvrD/REP family ATP-dependent DNA helicase [Arcobacter butzleri
           JV22]
 gi|315479088|gb|EFU69787.1| UvrD/REP family ATP-dependent DNA helicase [Arcobacter butzleri
           JV22]
          Length = 684

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 113/619 (18%), Positives = 201/619 (32%), Gaps = 131/619 (21%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL--ASLTLAKYLNAHYEE 139
           K  I + INK+ P           E  K ++   +    K+T           +   YE 
Sbjct: 119 KKRILKSINKEIPSAL-----LASEVSKYKNSLMSPSEVKATAQLKLYQEIAQIYEDYEN 173

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             +KN ++DF+DL++    +LK  +    +  +I Q+  +I++DE QDT+ +Q+ ++R L
Sbjct: 174 YLEKNNLVDFDDLLLLPYKILKNNE---NLAKQISQKYQYIMVDEYQDTNELQYRLLRLL 230

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                      SS   L  VGD+ QSIY + GA  K +L      +           +I+
Sbjct: 231 C----------SSHNNLCVVGDDDQSIYGWRGATIKNILNFSDHFENSL--------VIK 272

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RST  IL   +++     +  G     T                           
Sbjct: 273 LEDNYRSTDTILNHANQLIEHNRDRLGKKLIGTR-------------------------- 306

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                         D   +        R+I   I  +I +              K+I +L
Sbjct: 307 --TKGDSIKIYESNDENDET-------RKIVEDIKKLIDSGE----------NPKNIAIL 347

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  +        N   +           +   IKDL+A  R + +  D+ S   
Sbjct: 348 FRVNALSRSLEEGF----NKAGLHYKLVGGMKFYERSEIKDLIAYFRILTNLNDNFSIKR 403

Query: 440 MLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA---------NCGISKFQHVIKYIH 489
           ++  P     +  I K+       ++++++ IQ                   +     I 
Sbjct: 404 IINKPKRGIGKTTIEKLEEKSIETSKSIFDLIQDLDAEGISLIVGKKNARTLKVFEASIL 463

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNE-QNSYSSL 547
           +L   +   S   F          R  + +   G E    +DEF  +      QN +  L
Sbjct: 464 DLRE-SLTQSKMRFLDNFEETFDYRASYDNLPDGFERQANIDEFYGYIRDYFIQNPHLDL 522

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           ++ ++E+             +   V +M+VH +KGLE   +F++      F         
Sbjct: 523 KDFLNEIALENE----NDDYSGEAVSMMSVHASKGLEFKHLFIIGLEEGFFPITGDGS-- 576

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                                EE  RL YV +TRA D L +   
Sbjct: 577 -----------------------------------DLEEERRLGYVAITRAKDNLTLSFV 601

Query: 668 SNTSNEKKSNQRTWYDMVY 686
            +   + K    +    + 
Sbjct: 602 HSRFYKGKRTVLSKSRFLS 620


>gi|317494805|ref|ZP_07953216.1| ATP-dependent DNA helicase Rep [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917130|gb|EFV38478.1| ATP-dependent DNA helicase Rep [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 674

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 107/707 (15%), Positives = 238/707 (33%), Gaps = 138/707 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I+ + +L +E        KA  ++        +++ +
Sbjct: 59  AAREMKERV-AQTLGRKEARGLMISTFHTLGLEIIKREY--KALGMKANFSLFDDQDQLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL+   LT+++  +   + +++     + K  L   Q          +   +        
Sbjct: 116 LLTD--LTEQWLEKDKDLLKQLISTISNWKNDLIDPQQAATHAFSERDKIFVH------- 166

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    Y+   K   VLDF+DLI+    LL+  +    +R +  Q I ++L+DE QD
Sbjct: 167 -----CYQLYDAQLKACNVLDFDDLILLPTLLLRSNEE---VRERWQQRIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L  +                VGD+ QSIYS+ GA P+ ++  K      
Sbjct: 219 TNTSQYELVKLLVGN----------RARFTVVGDDDQSIYSWRGARPQNLVLLKEDFPA- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +       S              G 
Sbjct: 268 -------LQVIKLEQNYRSSQRILKSANILIANNPHVFEKRLFSEL------------GY 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +  + + + ++                          A R+            + ++  
Sbjct: 309 GEELKIITANNED-----------------------HEAERVV---------GELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  +L R    + +   +        +I    +          IKDL+A  R 
Sbjct: 337 INKTSYSDYAILYRGNHQSRVFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + + +DD +F+ ++ +P        + K+     H   +++               G+  
Sbjct: 393 LTNPDDDSAFLRIVNTPRREIGPATLQKLGEWANHRGISLFRASFDFGLSQTLTGRGLES 452

Query: 481 FQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
            Q    ++ E+  +++        D    +       +   S    E  +  +++  ++ 
Sbjct: 453 LQRFTHWMQEVSALSEREPIAAVRDLIHGVDYESWLFETSPSPKAAEMRMKNVNQLFSWM 512

Query: 537 LRNEQ----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
               +    +   +L ++++         +       ++V++MT+H +KGLE P V+LV 
Sbjct: 513 TEMLEGSDIDEPMTLTQVVTRFTLRDMMERGESEDEADQVQLMTLHASKGLEFPYVYLVG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       +   +E  RL Y
Sbjct: 573 MEEGLLPHQSSID-----------------------------------EDNVDEERRLAY 597

Query: 653 VGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           VG+TRA  +L+  +C+      E    + + + +       +   ++
Sbjct: 598 VGITRAQKELVFTLCRERRQYGELVRPEPSRFLLELPQDDLNWETER 644


>gi|241244738|ref|XP_002402374.1| uvrd / recb / pcra DNA helicase, putative [Ixodes scapularis]
 gi|215496329|gb|EEC05969.1| uvrd / recb / pcra DNA helicase, putative [Ixodes scapularis]
          Length = 761

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 154/450 (34%), Gaps = 72/450 (16%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K+ Q      ++        ++          L   Y+E  ++  V+DF +L++   +LL
Sbjct: 56  KEIQKFINACKEDGQRPGDLEAHDPHRRRLIELYQRYQEQCEREGVVDFGELLLRAYELL 115

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +    A IR    +   HIL+DE QDT+++Q+  +R L  D             +FAVG
Sbjct: 116 SRN---APIREHYQRRFKHILVDEFQDTNVLQYRWLRLLAGD----------QACMFAVG 162

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   +R   +         ++I L  ++RS   IL   + +   
Sbjct: 163 DDDQSIYAFRGANVGNMADFERDYAR--------GNVIRLEQNYRSCGHILDSANALIEN 214

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                G +  +              G  +L                         + + +
Sbjct: 215 NSGRLGKNLWT------------DSGEGELV-----------------------RISELA 239

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           S ++ A+ I   +  +I                ++I +L R    + +I           
Sbjct: 240 SDALEAQWIVDEVRALIAEGKP----------RREIAILYRSNAQSRVIEHRL----FSQ 285

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQ 459
            +           +   IK ++A  R + + +DD +F+ ++  P        + ++    
Sbjct: 286 GLPYKVYGGHRFFERQEIKHVLAYLRLMDNADDDTAFLRVVNFPTRGIGARSVEQLADLA 345

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R    ++   I        +        I ++   AQ  S  +    ++        + +
Sbjct: 346 RERGTSLLRAIPYLQGRAAASLMRFSNLIQDMASQAQILSLPELIEHVVHDSTLLAHYQA 405

Query: 520 -RFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            R G E ++ L E +N      Q     L 
Sbjct: 406 DREGAERLENLQELVNAATAYAQEQGKELF 435


>gi|221069358|ref|ZP_03545463.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
 gi|220714381|gb|EED69749.1| UvrD/REP helicase [Comamonas testosteroni KF-1]
          Length = 690

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 102/621 (16%), Positives = 183/621 (29%), Gaps = 121/621 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YEE       +DF+DLI     LL+       +R K  + + H+L+DE QDT+
Sbjct: 162 TALIMQRYEERLTAYQSVDFDDLIGMPMRLLRGHPE---VREKWQRLLGHVLVDEYQDTN 218

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L  +               AVGD+ QSIY + GA    + +      +   
Sbjct: 219 ATQYELLKFLVGE----------RAHFTAVGDDDQSIYGWRGATLDNLRKLPVDFPQ--- 265

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST+ IL   + V                                
Sbjct: 266 -----LKVIKLEQNYRSTSAILRAANNVIGPNPK-------------------------- 294

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L+ + +     +  P +              +    A R    I ++             
Sbjct: 295 LFPKTLFSELGEGEPVRIV---------DCDTEEHEAERAVARIQSLRAN-------MNP 338

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               KD  +L R            R       I    +      D   IKDL A  R  +
Sbjct: 339 QPAWKDFAILYRANHQAKPFEKALR----KANIPYKVSGGTSFFDRAEIKDLCAWFRLWI 394

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-----ETVYEYIQKFA--NCGISKFQ 482
           + +DD +F+  + +P        + K+             +++  + + A          
Sbjct: 395 NNDDDPAFLRSIGTPKRGIGHTTLGKLGEFSAAHKLSMFGSLFNAMLEEALPRKAFESLL 454

Query: 483 HVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDEF- 532
              +YI++L + A+     +    F    L      Q       +E         + EF 
Sbjct: 455 EFGRYINDLEYRARHTLGFEASRSFLIDWLKEIGYEQYLYDSEDSESVAAARWSNVLEFC 514

Query: 533 -----------LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                       +      Q    SL E+   +               + V + T+H +K
Sbjct: 515 DWMAQRAGGQIEDAAGAGTQTEVKSLLEVSQNIALLS--TISEREKEQDMVVLSTLHASK 572

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE P V  V     +                               ++     +     
Sbjct: 573 GLEWPHVMQVGVTEGMLPF------------------------KLDDDDGKQQKLSDETA 608

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           +  +E  RL+YVG+TRA   L +         ++         + +   +    K+    
Sbjct: 609 ARLQEERRLMYVGITRAQRTLAVSWTKRRKKGREMVACQPSRFIKEMGLDAATAKEDPRE 668

Query: 702 NSINKDEWIAYEWSTHHPENT 722
                 E  A   +   P   
Sbjct: 669 KLRKLREEFAARKNQAAPGAA 689


>gi|82779041|ref|YP_405390.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae Sd197]
 gi|309784490|ref|ZP_07679128.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1617]
 gi|81243189|gb|ABB63899.1| rep helicase [Shigella dysenteriae Sd197]
 gi|308927596|gb|EFP73065.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1617]
          Length = 673

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSMNNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 IWEQERKVVSAEE 651


>gi|26250516|ref|NP_756556.1| ATP-dependent DNA helicase Rep [Escherichia coli CFT073]
 gi|218707414|ref|YP_002414933.1| ATP-dependent DNA helicase Rep [Escherichia coli UMN026]
 gi|227888639|ref|ZP_04006444.1| ATP-dependent DNA helicase Rep [Escherichia coli 83972]
 gi|293407408|ref|ZP_06651328.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1412]
 gi|298383148|ref|ZP_06992742.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1302]
 gi|300985811|ref|ZP_07177603.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 45-1]
 gi|301047343|ref|ZP_07194428.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 185-1]
 gi|26110946|gb|AAN83130.1|AE016769_245 ATP-dependent DNA helicase rep [Escherichia coli CFT073]
 gi|218434511|emb|CAR15438.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli UMN026]
 gi|227834478|gb|EEJ44944.1| ATP-dependent DNA helicase Rep [Escherichia coli 83972]
 gi|291425519|gb|EFE98557.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1412]
 gi|298276384|gb|EFI17903.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1302]
 gi|300300760|gb|EFJ57145.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 185-1]
 gi|300407962|gb|EFJ91500.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 45-1]
 gi|307555906|gb|ADN48681.1| rep helicase a single-stranded DNA dependent ATPase [Escherichia
           coli ABU 83972]
 gi|315293139|gb|EFU52491.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 153-1]
 gi|320197590|gb|EFW72202.1| ATP-dependent DNA helicase Rep [Escherichia coli WV_060327]
          Length = 673

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGAELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 IWEQERKVVSAEE 651


>gi|91791771|ref|YP_561422.1| ATP-dependent DNA helicase Rep [Shewanella denitrificans OS217]
 gi|91713773|gb|ABE53699.1| ATP-dependent DNA helicase Rep [Shewanella denitrificans OS217]
          Length = 670

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/635 (16%), Positives = 214/635 (33%), Gaps = 128/635 (20%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           L+  +   +    +     F    +  L +  T  +    +++ K    L   +   + +
Sbjct: 89  LEIIKREYKVLGLKAGFSLFDDQDTLALLKDLTEDEFDGDKDLLKA---LASAISNWKGD 145

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            +         K  +S      L  +L   Y +  K    LDF+DLI+    LL+  +  
Sbjct: 146 LVIPAQARKLAKDEQS-----QLFSFLYQKYAQQMKAYNALDFDDLILLPTLLLRHNEE- 199

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R +    I ++L+DE QDT+  Q+E+++ L  +                VGD+ QSI
Sbjct: 200 --VRTRWQTRIQYLLVDEYQDTNTSQYELVKLLVGE----------RSRFTVVGDDDQSI 247

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YS+ GA+P+ ++   +              +I+L  ++RS+  IL   + + +   +   
Sbjct: 248 YSWRGAKPQNLVLLGKDFPA--------LKLIKLEQNYRSSQRILRAANILIANNPHVYD 299

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +  S           G+   V +                             ++    A
Sbjct: 300 KALFSE-------LAYGEPLRVLI----------------------------AANEEQEA 324

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            R+   I           +      +  D  +L R    + L+           +I    
Sbjct: 325 ERVVAEIVR---------HKFVGRTKFGDYAILYRGNHQSRLLERAL----MTNRIPYKI 371

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETET 465
           +          IKD+MA  + +++ +DD +F+ ++  P        + ++      +  +
Sbjct: 372 SGGTSFFARAEIKDIMAYLKLVVNPDDDNAFLRVVNLPKRGIGPASLERLGSFANEKHIS 431

Query: 466 VYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518
           ++  I +       A    +      ++I +   IA    P D    ++           
Sbjct: 432 LFSAIFEGELNHHLAPAATAALYQFGRFIVDTGEIATRGEPVDAIKQLIRKINYEDYLYE 491

Query: 519 ----SRFGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHN 570
               ++     +  + E   +        E +   +L E+++ L       +       +
Sbjct: 492 TSTSAKAAEMRMKNISELYRWVTEMLQGDELDEPMTLPEVVTRLTLRDMMERNNEDEGGD 551

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V++MT+H +KGLE P VF+V T  ++  H+                             
Sbjct: 552 QVQLMTLHASKGLEYPFVFMVGTEERILPHQVSID------------------------- 586

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                     +   +E  RL YVG+TRA  +L   
Sbjct: 587 ----------EDNVDEERRLAYVGITRAQRELWFT 611


>gi|15833965|ref|NP_312738.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           Sakai]
 gi|168751735|ref|ZP_02776757.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753671|ref|ZP_02778678.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764145|ref|ZP_02789152.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768055|ref|ZP_02793062.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775675|ref|ZP_02800682.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780673|ref|ZP_02805680.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786612|ref|ZP_02811619.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC869]
 gi|168800994|ref|ZP_02826001.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC508]
 gi|193066130|ref|ZP_03047185.1| ATP-dependent DNA helicase Rep [Escherichia coli E22]
 gi|193071046|ref|ZP_03051973.1| ATP-dependent DNA helicase Rep [Escherichia coli E110019]
 gi|194429767|ref|ZP_03062282.1| ATP-dependent DNA helicase Rep [Escherichia coli B171]
 gi|195938066|ref|ZP_03083448.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808178|ref|ZP_03250515.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813347|ref|ZP_03254676.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819670|ref|ZP_03259990.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398850|ref|YP_002273296.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4115]
 gi|209921251|ref|YP_002295335.1| ATP-dependent DNA helicase Rep [Escherichia coli SE11]
 gi|217324229|ref|ZP_03440313.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795776|ref|YP_003080613.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           TW14359]
 gi|260870503|ref|YP_003236905.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O111:H- str. 11128]
 gi|261255598|ref|ZP_05948131.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291285193|ref|YP_003502011.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str.
           CB9615]
 gi|293417244|ref|ZP_06659869.1| ATP-dependent DNA helicase Rep [Escherichia coli B185]
 gi|300818753|ref|ZP_07098960.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 107-1]
 gi|300823309|ref|ZP_07103440.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 119-7]
 gi|331660120|ref|ZP_08361056.1| ATP-dependent DNA helicase Rep [Escherichia coli TA206]
 gi|331670623|ref|ZP_08371460.1| ATP-dependent DNA helicase Rep [Escherichia coli TA271]
 gi|331685497|ref|ZP_08386081.1| ATP-dependent DNA helicase Rep [Escherichia coli H299]
 gi|13364186|dbj|BAB38134.1| rep helicase, a single-stranded DNA dependent ATPase [Escherichia
           coli O157:H7 str. Sakai]
 gi|187768815|gb|EDU32659.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014262|gb|EDU52384.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001612|gb|EDU70598.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359080|gb|EDU77499.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362630|gb|EDU81049.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365803|gb|EDU84219.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373350|gb|EDU91766.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC869]
 gi|189376792|gb|EDU95208.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC508]
 gi|192926227|gb|EDV80866.1| ATP-dependent DNA helicase Rep [Escherichia coli E22]
 gi|192955633|gb|EDV86109.1| ATP-dependent DNA helicase Rep [Escherichia coli E110019]
 gi|194412179|gb|EDX28486.1| ATP-dependent DNA helicase Rep [Escherichia coli B171]
 gi|208727979|gb|EDZ77580.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734624|gb|EDZ83311.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739793|gb|EDZ87475.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160250|gb|ACI37683.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4115]
 gi|209753538|gb|ACI75076.1| guanosine pentaphosphatase [Escherichia coli]
 gi|209753540|gb|ACI75077.1| guanosine pentaphosphatase [Escherichia coli]
 gi|209753542|gb|ACI75078.1| guanosine pentaphosphatase [Escherichia coli]
 gi|209753544|gb|ACI75079.1| guanosine pentaphosphatase [Escherichia coli]
 gi|209753546|gb|ACI75080.1| guanosine pentaphosphatase [Escherichia coli]
 gi|209914510|dbj|BAG79584.1| DNA helicase Rep [Escherichia coli SE11]
 gi|217320450|gb|EEC28874.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           TW14588]
 gi|222035480|emb|CAP78225.1| ATP-dependent DNA helicase rep [Escherichia coli LF82]
 gi|254595176|gb|ACT74537.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli O157:H7 str. TW14359]
 gi|257766859|dbj|BAI38354.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O111:H- str. 11128]
 gi|290765066|gb|ADD59027.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str.
           CB9615]
 gi|291431012|gb|EFF04007.1| ATP-dependent DNA helicase Rep [Escherichia coli B185]
 gi|300524095|gb|EFK45164.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 119-7]
 gi|300528719|gb|EFK49781.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 107-1]
 gi|312948333|gb|ADR29160.1| ATP-dependent DNA helicase Rep [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315300851|gb|EFU60073.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 16-3]
 gi|320191128|gb|EFW65778.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198514|gb|EFW73115.1| ATP-dependent DNA helicase Rep [Escherichia coli EC4100B]
 gi|320639262|gb|EFX08884.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           G5101]
 gi|320644647|gb|EFX13697.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H- str.
           493-89]
 gi|320649972|gb|EFX18475.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H- str. H
           2687]
 gi|320655318|gb|EFX23260.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320660943|gb|EFX28386.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666067|gb|EFX33081.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323161158|gb|EFZ47076.1| ATP-dependent DNA helicase Rep [Escherichia coli E128010]
 gi|323173395|gb|EFZ59024.1| ATP-dependent DNA helicase Rep [Escherichia coli LT-68]
 gi|323189500|gb|EFZ74780.1| ATP-dependent DNA helicase Rep [Escherichia coli RN587/1]
 gi|324016173|gb|EGB85392.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 117-3]
 gi|326344236|gb|EGD67996.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. 1125]
 gi|326347937|gb|EGD71651.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. 1044]
 gi|331052688|gb|EGI24723.1| ATP-dependent DNA helicase Rep [Escherichia coli TA206]
 gi|331062096|gb|EGI34018.1| ATP-dependent DNA helicase Rep [Escherichia coli TA271]
 gi|331077198|gb|EGI48412.1| ATP-dependent DNA helicase Rep [Escherichia coli H299]
          Length = 673

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 IWEQERKVVSAEE 651


>gi|50842796|ref|YP_056023.1| exodeoxyribonuclease V beta chain [Propionibacterium acnes KPA171202]
 gi|50840398|gb|AAT83065.1| exodeoxyribonuclease V beta chain [Propionibacterium acnes KPA171202]
 gi|315105908|gb|EFT77884.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL030PA1]
          Length = 1078

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 125/868 (14%), Positives = 247/868 (28%), Gaps = 140/868 (16%)

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A  +        K   V  F+DLI +    L+        R  +      +++DE QDT 
Sbjct: 205  ALSVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLARATLAHRFGLVMVDEFQDTD 264

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +QWE++R                  L+ +GD KQSIY+F GA+        +       
Sbjct: 265  PLQWEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ------- 307

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGT 307
                   ++ L +++R+   I+  V+ +FS  +    +S +  +      R       G 
Sbjct: 308  ---SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHDISMELVTAHHQESRIKTAATDGP 364

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               W Q       Q     +  T+  D    E         +   I  + G   +     
Sbjct: 365  RYHWSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDG 417

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LVR R+    +               V +    +    A +DL+ L   
Sbjct: 418  LRPLRPTDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLITLLEA 473

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D+     +  S L   +  D+    ++      +              +  V   
Sbjct: 474  LEN-TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAA 532

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +H                 ++    G +             +             + ++ 
Sbjct: 533  LHR----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATA 577

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    
Sbjct: 578  AWIREQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPI 637

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +     D     + I    +  +I    I+  ++  + E  RLLYV +TRA   + +   
Sbjct: 638  VWH---DGQRRVLDISSQGTDRSI---AIESHEEDERGENLRLLYVALTRARSAVRLWWS 691

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +     +  +V       E    +  T+        +   +T           
Sbjct: 692  PCP---LRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPWLNSGPIATVIAPANQKLLT 748

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYI------LNPSTIDTKGKTNLESLLSDNQ--- 778
             ++        +P+ L  P+               L+ +  +      ++  + D     
Sbjct: 749  RSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDD 808

Query: 779  ----------TFNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLS 827
                        + G ++H +L+ I T         +  +         P      L  S
Sbjct: 809  TAPGLCGLPGGTSFGTLVHTVLEYIDTAAIDLSSEVLSITRRALRMSPLPDVPPSELATS 868

Query: 828  ITRLLENPM--------MTTAMSCDSYSEVSVSGKIN----------------------- 856
            + ++L + +        +      D  +E++    +                        
Sbjct: 869  LEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPP 928

Query: 857  -------------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQEI----- 893
                          P  D  + G     ID +         + +YKT+            
Sbjct: 929  DDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHM 988

Query: 894  --------EHIPYTHIAQLSIYEKILKD 913
                          +  Q  +Y   L  
Sbjct: 989  YDAHTMRTMMFSSHYPLQGLLYSAALHR 1016


>gi|292493270|ref|YP_003528709.1| ATP-dependent DNA helicase Rep [Nitrosococcus halophilus Nc4]
 gi|291581865|gb|ADE16322.1| ATP-dependent DNA helicase Rep [Nitrosococcus halophilus Nc4]
          Length = 668

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 96/605 (15%), Positives = 197/605 (32%), Gaps = 118/605 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  L A Y    +    +DF+DLI     L         I  +      ++L+DE QDT+
Sbjct: 164 AAQLYAAYNRRLRAYNGVDFDDLIGLPVALFALHPD---ILNRWQNRFRYLLVDEYQDTN 220

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+++++ L                +  VGD+ QS+Y++ GA P+ + + +    +   
Sbjct: 221 EAQYQLVKHLAGVRGA----------VTVVGDDDQSVYAWRGARPENLRQLREDFPQ--- 267

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 ++I+L  ++RS   IL V +++ S   +                          
Sbjct: 268 -----LTVIKLEQNYRSNGRILRVANRLISHNPHIFEKR--------------------- 301

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW  +                S  D           A RI            +  +  K 
Sbjct: 302 LWSAL-------GEGDPIQVLSCRD-------EHHEAERIVAE---------LMYHRFKH 338

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  +L R    +       R     + I  V +      +   +KD+MA  R + 
Sbjct: 339 RTACRDYAILYRGNHQSRPFERALRA----HGIPYVLSGGTSFFERGEVKDIMAYLRLLA 394

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQ 482
           +++DD +F+ +  +P        + K+        +++     +       +   + + +
Sbjct: 395 NEDDDNAFLRVANTPRRGIGAATLEKLAGYAARRGQSLLASGFELGLGEYLSGEALMRLR 454

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTL 537
              +++  L    +   P      ++     R          R     +  ++E + +  
Sbjct: 455 RFCEWVVGLADRGRRGDPIAVIKDLIDEIDYRAWLDEICNDRRTAERRMANVEELVGWLE 514

Query: 538 RNEQNSY--SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           R  Q      +L +L++E+       +     + + V ++T+H AKGLE P VF+V    
Sbjct: 515 RLYQRGDERRNLGDLVAEISLQDILERTQEKKDRDAVNLLTLHAAKGLEFPHVFIVGMEE 574

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
           ++  H+                                      ++   EE  RL YVG+
Sbjct: 575 ELLPHRTSL-----------------------------------EQGALEEERRLAYVGI 599

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA   L     +      ++ +      + +    D + ++        +         
Sbjct: 600 TRAQRSLYFTMAAKRQQYGEAIRCEPSRFLSELPEADLQWEREGAPRDPAERMERGQVHL 659

Query: 716 THHPE 720
            +  E
Sbjct: 660 ANLRE 664


>gi|21672830|ref|NP_660897.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|4033461|sp|O51889|REP_BUCAP RecName: Full=ATP-dependent DNA helicase rep
 gi|2827035|gb|AAC38127.1| replicase [Buchnera aphidicola]
 gi|21623483|gb|AAM68108.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 658

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 111/640 (17%), Positives = 215/640 (33%), Gaps = 125/640 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K I ++ I   +  LK+ +        K           +S         +    Y    
Sbjct: 118 KKICSKSIKNDTKLLKKLVFMISFWKNKFLTPLQVQLSAQSN--LEKDFAFFYKQYTFHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +K+ +LDF+DLI     LLK   +   I+ +  ++I+++L+DE QDT+  Q+E+I+ LT 
Sbjct: 176 RKSNILDFDDLICIPTSLLKNNQI---IQNRWQKKISYLLVDEYQDTNNSQYELIKMLT- 231

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +       VGD+ QSIYS+ GA+P+ +   K+              II++ 
Sbjct: 232 ---------NVNSNFTLVGDDDQSIYSWRGAKPQNLFLIKKDFPN--------LKIIKME 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS   IL   +K+ S   +       S     ++                       
Sbjct: 275 QNYRSYGRILKAANKLISNNLHYFKKKLFSNLEYGNK----------------------- 311

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                         +    +    A +IA  I                ++Q KD  +L R
Sbjct: 312 ------------IKVIIGKNEKNEAEKIADKI---------IHECSNDIMQYKDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + ++            I    +          IKDL++  R I++ +D+ +F+ +L
Sbjct: 351 GNYQSQILEKTF----LKKNIPYDISTNSSFFSRPEIKDLLSYLRLIVNPDDNHAFIRIL 406

Query: 442 KSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHI 494
             P        + K+      + +++++               + K +  I +I ++I +
Sbjct: 407 NIPHRQIGLTTLNKLEELASKKNKSLFQISNDIEIKKILRERTVKKIKDFIYWIKKIIKL 466

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRN----EQNSYS 545
           +           I+   K                  I+ +    N+        E     
Sbjct: 467 S-LLKEDIILDKIINDIKYELWLTKILKEPKKIKTSINNIYTLSNWLKEMLRGNEFEKPM 525

Query: 546 SLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           +L +++ ++       K+        N V++MT+H++KGLE   VF++     +  +   
Sbjct: 526 NLLQIVKKMTLRDILEKKIQINEIPKNRVQLMTLHSSKGLEFSSVFIIGMNEGILPN--- 582

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                           IK +     EE  RL YVGMTRA  +L 
Sbjct: 583 --------------------------------IKSINNDNIEEERRLTYVGMTRARKELF 610

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
                      +         +++    D + +K    ++
Sbjct: 611 FTYCQTRIQYGQKLYTAPSRFLFELPQEDLQWEKDDYLDA 650


>gi|110644106|ref|YP_671836.1| ATP-dependent DNA helicase Rep [Escherichia coli 536]
 gi|191174367|ref|ZP_03035872.1| ATP-dependent DNA helicase Rep [Escherichia coli F11]
 gi|300979305|ref|ZP_07174489.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 200-1]
 gi|110345698|gb|ABG71935.1| ATP-dependent DNA helicase Rep [Escherichia coli 536]
 gi|190905344|gb|EDV64978.1| ATP-dependent DNA helicase Rep [Escherichia coli F11]
 gi|300308058|gb|EFJ62578.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 200-1]
 gi|324014722|gb|EGB83941.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 60-1]
          Length = 673

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 100/647 (15%), Positives = 211/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAEAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGC 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|251767077|ref|ZP_02265907.2| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20]
 gi|243063896|gb|EES46082.1| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20]
          Length = 738

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/578 (16%), Positives = 180/578 (31%), Gaps = 125/578 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R +    + ++LIDE QDT+
Sbjct: 213 AALVYRNYVATLHAYQAVDFDDLIRLPTELFARNE---PVRDRWQNRLRYLLIDEYQDTN 269

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 270 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 316

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 317 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 362

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 363 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 387

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 388 RTQFRDYAILYRGNFQARVFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 443

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   +   +
Sbjct: 444 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 503

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL----- 533
               +I  L   A          D    I         +  R        + EFL     
Sbjct: 504 IFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKR 563

Query: 534 -------NFTLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVH 578
                     +  E   + +   L          ++             + + VR+ TVH
Sbjct: 564 KGTKPEAEQAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVH 623

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H        +     +        +              
Sbjct: 624 ASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDDERIEEERIEEERR-------------- 669

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                      L+YV +TRA   L +         +++
Sbjct: 670 -----------LMYVAITRAQRSLHLNWCKKRKRARET 696


>gi|270264227|ref|ZP_06192494.1| ATP-dependent DNA helicase rep [Serratia odorifera 4Rx13]
 gi|270041876|gb|EFA14973.1| ATP-dependent DNA helicase rep [Serratia odorifera 4Rx13]
          Length = 655

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 100/668 (14%), Positives = 214/668 (32%), Gaps = 121/668 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  + +      + + +    +    + D     ++ +S      L  +   
Sbjct: 93  DQLALLKELTEKWLENDKTLVAQLISTISNWKNDLVDPKKAMELARSERD--KLFAHCYG 150

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y    +   VLDF+DLI+    LL++ +    +R +    I ++L+DE QDT+  Q+E+
Sbjct: 151 LYHAHMRACNVLDFDDLILLPTLLLQRNEE---VRERWQNRIRYLLVDEYQDTNTSQYEL 207

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +                VGD+ QSIYS+ GA P+ ++  K              
Sbjct: 208 VKLLVGN----------RARFTVVGDDDQSIYSWRGARPQNLVLLKEDFPA--------L 249

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S              G  +  + V 
Sbjct: 250 QVIKLEQNYRSSERILKAANILIANNPHVFEKRLFSEL------------GYGEELKVVT 297

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           + ++                          A R+            + ++   +     D
Sbjct: 298 ANNED-----------------------HEAERVV---------GELIAHHFVKKTNYGD 325

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L   +        +I    +          IKDL+A  R + +Q+DD 
Sbjct: 326 YAILYRGNHQSRLFEKML----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNQDDDS 381

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++                    Q    ++
Sbjct: 382 AFLRIVNTPKREIGPATLQKLGEWANQRNKSLFRASFDLGLSQHLTGRGLESLQRFTHWL 441

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----E 540
             +  +A+        D    +       +   S    E  +  ++    +        E
Sbjct: 442 DGIAQLAEREPVAAVRDLIHGVDYESWLFETSPSPKAAEMRMKNVNTLFGWMTEMLEGSE 501

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 502 LDEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 561

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       +   +E  RL YVG+TRA  
Sbjct: 562 QSSID-----------------------------------EDNVDEERRLAYVGITRAQK 586

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +LI           +  +      + +   +D   +  +   S  +          +   
Sbjct: 587 ELIFTLCRERRQYGELVRPEPSRFLLELPQDDLAWESERKVVSPQERMQKGQSHLANIRA 646

Query: 721 NTPLEREE 728
                + E
Sbjct: 647 QLAKAKGE 654


>gi|323974362|gb|EGB69490.1| ATP-dependent DNA helicase Rep [Escherichia coli TW10509]
          Length = 673

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 222/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDSHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H++  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHLLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 VWEQERKVVSAEE 651


>gi|264676536|ref|YP_003276442.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
 gi|299531318|ref|ZP_07044728.1| UvrD/REP helicase [Comamonas testosteroni S44]
 gi|262207048|gb|ACY31146.1| UvrD/REP helicase [Comamonas testosteroni CNB-2]
 gi|298720725|gb|EFI61672.1| UvrD/REP helicase [Comamonas testosteroni S44]
          Length = 690

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 102/621 (16%), Positives = 183/621 (29%), Gaps = 121/621 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YEE       +DF+DLI     LL+       +R K  + + H+L+DE QDT+
Sbjct: 162 TALIMQRYEERLTAYQSVDFDDLIGMPMRLLRGHPE---VREKWQRLLGHVLVDEYQDTN 218

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L  +               AVGD+ QSIY + GA    + +      +   
Sbjct: 219 ATQYELLKFLVGE----------RAHFTAVGDDDQSIYGWRGATLDNLRKLPVDFPQ--- 265

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST+ IL   + V                                
Sbjct: 266 -----LKVIKLEQNYRSTSAILRAANNVIGPNPK-------------------------- 294

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L+ + +     +  P +              +    A R    I ++             
Sbjct: 295 LFPKTLFSELGEGEPVRIV---------DCDTEEHEAERAVARIQSLRAN-------MNP 338

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               KD  +L R            R       I    +      D   IKDL A  R  +
Sbjct: 339 QPAWKDFAILYRANHQAKPFEKALR----KANIPYKVSGGTSFFDRAEIKDLCAWFRLWI 394

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-----ETVYEYIQKFA--NCGISKFQ 482
           + +DD +F+  + +P        + K+             +++  + + A          
Sbjct: 395 NNDDDPAFLRSIGTPKRGIGHTTLGKLGEFSAAHKLSMFGSLFNAMLEEALPRKAFESLL 454

Query: 483 HVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDEF- 532
              +YI++L + A+     +    F    L      Q       +E         + EF 
Sbjct: 455 EFGRYINDLEYRARHTLGFEASRSFLIDWLKEIGYEQYLYDSEDSESVAAARWSNVLEFC 514

Query: 533 -----------LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                       +      Q    SL E+   +               + V + T+H +K
Sbjct: 515 DWMAQRAGGQIEDAAGAGTQTEVKSLLEVSQNIALLS--TISEREKEQDMVVLSTLHASK 572

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE P V  V     +                               ++     +     
Sbjct: 573 GLEWPHVMQVGVTEGMLPF------------------------KLDDDDGKQQQVSDETA 608

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           +  +E  RL+YVG+TRA   L +         ++         + +   +    K+    
Sbjct: 609 ARLQEERRLMYVGITRAQRTLAVSWTKRRKKGREMVACQPSRFIKEMGLDAATAKEDPRE 668

Query: 702 NSINKDEWIAYEWSTHHPENT 722
                 E  A   +   P   
Sbjct: 669 KLRKLREEFAARKNQAAPGAA 689


>gi|319427918|gb|ADV55992.1| ATP-dependent DNA helicase Rep [Shewanella putrefaciens 200]
          Length = 670

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 112/675 (16%), Positives = 226/675 (33%), Gaps = 139/675 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E I + +      +   I+ + +L +E        K   L+        ++  +
Sbjct: 59  AAREMKERIAQSMGR-KEARGLWISTFHTLGLEI--IKREHKVLGLKPGFSLFDDQDTLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-KSQDEFIKIRDRFNTYKMFKSTLAS 126
           LL    LTQ    +   + + +     + K  L    Q   I   ++ + + M       
Sbjct: 116 LLKE--LTQDELDEDKDLLKSLASTISNWKGGLIIPEQARKIAQDEQQHLFAM------- 166

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 L   Y +  K    LDF+DLI+    LL+  +    +R +   +I ++L+DE Q
Sbjct: 167 ------LYQRYAQHMKAYNALDFDDLILLPTLLLRHNEE---VRTRWQTKIQYLLVDEYQ 217

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+E+++ L  +                VGD+ QSIYS+ GA+P+ ++       K
Sbjct: 218 DTNTSQYEMVKLLVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGTDFPK 267

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RS+  IL   + + +   +    +  S           G+  
Sbjct: 268 --------LKLIKLEQNYRSSQRILRAANILIANNPHVYDKALFSE-------LAYGEPL 312

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                               ++    A R+   I           + 
Sbjct: 313 RVLF----------------------------AANEEQEAERVVAEIVR---------HK 335

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                Q  D  +L R    + L+           +I    +          IKD+M   +
Sbjct: 336 FVGRTQFGDYAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFARAEIKDIMGYLK 391

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------S 479
            +++ +DD +F+ ++  P        + ++      +  +++  I +            S
Sbjct: 392 LVVNPDDDNAFLRIVNLPKRGIGPSTLERLGHFANEKHISMFAAIFEPELNHHLPPAAMS 451

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLN 534
                 ++I E    AQ   P +    ++               ++     +  + E   
Sbjct: 452 SLYQFGRFIVETGDQAQRGEPVEAVKQLIRKINYEDYLYETSTSAKAAEMRMKNISELYR 511

Query: 535 FTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           +        E +   +L ++++ L       + +     ++V++MT+H +KGLE P VF+
Sbjct: 512 WVTEMLAGDELDEPMTLPDVVNRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPYVFM 571

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V    ++  H+                                       +   +E  RL
Sbjct: 572 VGVEERILPHQTSID-----------------------------------EDNIDEERRL 596

Query: 651 LYVGMTRASDQLIIC 665
            YVG+TRA  +L   
Sbjct: 597 AYVGITRAQRELWFT 611


>gi|146294682|ref|YP_001185106.1| ATP-dependent DNA helicase Rep [Shewanella putrefaciens CN-32]
 gi|145566372|gb|ABP77307.1| ATP-dependent DNA helicase Rep [Shewanella putrefaciens CN-32]
          Length = 670

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 112/675 (16%), Positives = 226/675 (33%), Gaps = 139/675 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E I + +      +   I+ + +L +E        K   L+        ++  +
Sbjct: 59  AAREMKERIAQSMGR-KEARGLWISTFHTLGLEI--IKREHKVLGLKPGFSLFDDQDTLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-KSQDEFIKIRDRFNTYKMFKSTLAS 126
           LL    LTQ    +   + + +     + K  L    Q   I   ++ + + M       
Sbjct: 116 LLKE--LTQDELDEDKDLLKSLASTISNWKGGLIIPEQARKIAQDEQQHLFAM------- 166

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 L   Y +  K    LDF+DLI+    LL+  +    +R +   +I ++L+DE Q
Sbjct: 167 ------LYQRYAQHMKAYNALDFDDLILLPTLLLRHNEE---VRTRWQTKIQYLLVDEYQ 217

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+E+++ L  +                VGD+ QSIYS+ GA+P+ ++       K
Sbjct: 218 DTNTSQYEMVKLLVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGTDFPK 267

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RS+  IL   + + +   +    +  S           G+  
Sbjct: 268 --------LKLIKLEQNYRSSQRILRAANILIANNPHVYDKALFSE-------LAYGEPL 312

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                               ++    A R+   I           + 
Sbjct: 313 RVLF----------------------------AANEEQEAERVVAEIVR---------HK 335

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                Q  D  +L R    + L+           +I    +          IKD+M   +
Sbjct: 336 FVGRTQFGDYAILYRGNHQSRLLERAL----MTNRIPYKLSGGTSFFARAEIKDIMGYLK 391

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------S 479
            +++ +DD +F+ ++  P        + ++      +  +++  I +            S
Sbjct: 392 LVVNPDDDNAFLRIVNLPKRGIGPSTLERLGHFANEKHISMFAAIFEPELNHHLPPAAMS 451

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLN 534
                 ++I E    AQ   P +    ++               ++     +  + E   
Sbjct: 452 SLYQFGRFIVETGDQAQRGEPVEAVKQLIRKINYEDYLYETSTSAKAAEMRMKNISELYR 511

Query: 535 FTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           +        E +   +L ++++ L       + +     ++V++MT+H +KGLE P VF+
Sbjct: 512 WVTEMLAGDELDEPMTLPDVVNRLTLRDMMERNSEDEGGDQVQLMTLHASKGLEFPYVFM 571

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V    ++  H+                                       +   +E  RL
Sbjct: 572 VGVEERILPHQTSID-----------------------------------EDNIDEERRL 596

Query: 651 LYVGMTRASDQLIIC 665
            YVG+TRA  +L   
Sbjct: 597 AYVGITRAQRELWFT 611


>gi|148549739|ref|YP_001269841.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida F1]
 gi|148513797|gb|ABQ80657.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas putida
            F1]
          Length = 1224

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 137/1045 (13%), Positives = 291/1045 (27%), Gaps = 153/1045 (14%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK-KAQTLQQASQTQC 61
                 +  +        +         ++ +    ++        K +A+  +      C
Sbjct: 215  AALIQASLQQRGAQLARIKAPWAQWAEELRQICRDALAAKQVDGRKMQARYFEPWFDKLC 274

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                   L    L   FT        E  K  P     L   Q    +++   +      
Sbjct: 275  AWASDEQLVELDLGTGFTRLTPAGMAEAWKGEPPEHPALNAMQHLQQQLQALDSPDAPL- 333

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                    A +++A +E  K++   + F+D+++     L   +    +   I ++    L
Sbjct: 334  ----LEHAASWVSARFEVEKRRRAEMGFDDMLVRLQHALA-SEAGERLASLIREQFPVAL 388

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT  +Q+ +   + +      + + +   LF +GD KQ+IY+F GA+    L  +
Sbjct: 389  IDEFQDTDPVQYGIFERIYQ-----ISENRAETGLFMIGDPKQAIYAFRGADIYTYLAAR 443

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG------LSEDSTTTI 295
            R              +  L  ++RS+  ++  V++VF   E  +         E     +
Sbjct: 444  RA---------TSGRLHSLDTNYRSSKAMVAAVNQVFLQAEAREAGRGAFLFREADDNPL 494

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                 R    G   L +  VS        + E      + +        LA   A  I  
Sbjct: 495  PFIEVRAKGRGEQLLIDGEVSAALQCWQLESE------EPVSSSVYRQQLAASCASHIVA 548

Query: 356  MIGTDT------IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            ++            + G+ R     DI +LVR   +  ++       +     SV  +D+
Sbjct: 549  LLNGGQQGTAGFQNAEGELRACLPSDIAILVRDGHEAQMVRAELAAREVR---SVYLSDK 605

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +       DL+A  +     + +      L S     S   + ++           E 
Sbjct: 606  DSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDRLNQD--------ER 657

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            + +        ++   +    L  +            ++    G +   +         L
Sbjct: 658  VWESWVMRFRLYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLL------HL 711

Query: 530  DEFLNFTLRNEQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             E L           + ++ L   L    Q          ++   V+++T+H +KGLE P
Sbjct: 712  AELLQQAAGELDGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYP 771

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V+L    +          +    S  +                   + I+        E
Sbjct: 772  LVYLPFICTSKPVDGSRLPLAWHDSEGNAHLTLTPD----------EEQIERADDERLAE 821

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---------------RTWYDMVYDSFHN 691
              RLLYV +TRA     +         +KS+Q                     + D    
Sbjct: 822  DLRLLYVALTRAQHACWLGVADLKRGNQKSSQLHRSAFGYLLGGGLALAGSAQLTDWLQA 881

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----SPI 747
                        + + +   Y       E  P  R                L     +  
Sbjct: 882  LAASCPHITCPGLPQADEQMYRMPHAERELLPARRPRHAAAEHWWIASYSALRVGDQTLG 941

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR----GLIIHKLLQVIFTLPEHKRKN 803
             +      +L+    D +    + +   D   F R    G  +H LL+        +   
Sbjct: 942  ADSSQAQQLLDDEVPDAQVLREVPADSGDIHRFPRGPNPGTFLHGLLEWAGREGFSEVSG 1001

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS--------YSEVSVSGKI 855
                      +    +++   + +++  ++  +        S             +  + 
Sbjct: 1002 NPQLIERTVGQRCNRRDWAGWIPTLSHWMQRLLGEALPLPGSDQSVTLGQLRHYQIEMEF 1061

Query: 856  NCPKKDI-----------------------------IISGRIDQISISQQNIFIFEYKTH 886
                  +                             +  G ID         ++ +YK++
Sbjct: 1062 WFASHRVDAEQLDRLVARHTHPGLARPAAQPTVLNGMFKGFIDLAFELDGRYYVTDYKSN 1121

Query: 887  HHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYP--------NKSLVCLL-IYVS 928
                          E   + + +  Q  +Y   L             ++ +   L I++ 
Sbjct: 1122 WLGADIQAYDAMAMEKAILEHRYDLQYVLYLLALHRQLRARLADYDYDRHVGGALFIFLR 1181

Query: 929  E------PKVFIIPQNKLNKAFAEI 947
                         P  +L ++   +
Sbjct: 1182 GASSSGHGVYHAKPPRELIESLDAL 1206


>gi|218893376|ref|YP_002442245.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa LESB58]
 gi|218773604|emb|CAW29418.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa LESB58]
          Length = 1245

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 134/1055 (12%), Positives = 295/1055 (27%), Gaps = 140/1055 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-----QTQ 60
             LS  ES   + +      Y Q+  ++     +       +    + L+        + +
Sbjct: 219  ALSAPESLTALLEQ-GGDWYRQLDQLDAQARAAWRAARVELEALLRDLRPYLNGNSYRGK 277

Query: 61   CIEERFSLLSSFFLT-QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--KIRDRFNTY 117
              +E F           +   Q   + +    +     +++                   
Sbjct: 278  DSDETFDAWLQALADWSEGGEQPANLGKFGQTRIKLTAKRVAPEHAALRAIDAWAAHQEE 337

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +   +    L     +    E  K++   + F+DL+   +  L+       +   I ++ 
Sbjct: 338  RPDLAPHLLLHALGEVGHELEIEKQRRAEIGFDDLLSRLDRALQGPG-GERLAQLIREQF 396

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               LIDE QDT  +Q+ +   +           +    LF +GD KQ+IY+F GA+    
Sbjct: 397  PVALIDEFQDTDPVQYRIFERIYRIAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTY 456

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            LR +            +     L  +FRSTA ++   ++ F+  E     +         
Sbjct: 457  LRAREA---------TRGRHYTLGKNFRSTAAMVAAANRCFAFAEEHPRGAFRFAREGLE 507

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                   V      E+++            +       L   +    +A R A  I   +
Sbjct: 508  NPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLDVEAGVLGSAAYRQEMAERSASAIRRWL 567

Query: 358  ------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                          G  R ++  DI +LVR R +      +   L      SV  +DR  
Sbjct: 568  SLADLGRAGFADEQGGWRALRPADIAILVRGRAEA---EAIRSALAARRLASVYLSDRDS 624

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D     DL+   R       D      L +   +     + ++           E   
Sbjct: 625  VFDSQEAIDLLHWLRACADPGADTLLRVALATRSLHLDWATLERLNQD--------ELFW 676

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            +        ++   +    L  + +  +  +    +L    G +   +         L E
Sbjct: 677  ERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLLRHADGERSLTNLL------HLAE 730

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            +L          ++ ++ L  +++           ++ + ++++T+H +KGLE P+V L 
Sbjct: 731  WLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHKSKGLEYPLVLLP 790

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               S      +               +     +        +   +        E  RLL
Sbjct: 791  FICSWRELDGNSGAPASFHEDGAAGRVIELARRK----EQAARAYEQANDERLGEDMRLL 846

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-----------------VYDSFHNDER 694
            YV +TRA   + +      ++  KS +     +                    +   + R
Sbjct: 847  YVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCLAALRGECR 906

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               ++     + + ++A                     +     +  +  + + +D    
Sbjct: 907  EIVVEPAPEADAERYVAGRGQGLGLARETRRSSREKWWVASYSGLQLQASAGLDDDEALE 966

Query: 755  YILNPSTIDTKGKTNLESLLS------------------DNQTFNRGLIIHKLLQV---- 792
               +   I  +  T  E   S                    +    G  +H LL+     
Sbjct: 967  SDESQEPISAEEATFHEEGRSAEQPPVAHASEMRDDLHRFPRGPAPGTFLHGLLEWAGRE 1026

Query: 793  ---IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLENPMMT---------- 838
               +      +R+  +   C        A+     L       L  P             
Sbjct: 1027 GFEVARADAQRRRELVARRCDLRGWKDWAEPLDLWLEQYLAEPLRWPGGETSLAGLVAYQ 1086

Query: 839  -----TAMSCDSYSEV------------SVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
                    +    +E             +    +     + +  G +D +   Q   ++ 
Sbjct: 1087 VEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNGMFKGFVDLVFEHQGRFYVA 1146

Query: 882  EYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDS---------YPNKSLVCL 923
            +YK++     +  + P           +  Q  +Y   L            Y       +
Sbjct: 1147 DYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALHRQLKARLPDYDYDRHMGGAV 1206

Query: 924  LIYVSEPKV------FIIPQNKLNKAFAEISTKIP 952
             +++   +       F  P  +L +    + +  P
Sbjct: 1207 YLFLRGARAATQGLHFERPPRELIERLDALFSGQP 1241


>gi|307133008|ref|YP_003885024.1| ATP-dependent DNA helicase Rep [Dickeya dadantii 3937]
 gi|306530537|gb|ADN00468.1| ATP-dependent DNA helicase Rep [Dickeya dadantii 3937]
          Length = 674

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 109/737 (14%), Positives = 237/737 (32%), Gaps = 136/737 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + L         +    +  +  T    I+K+            + +   
Sbjct: 59  AAREMKERVAQTLG------RQETRGLLIATFHTLGLEIIKREYAALGMKSNFSLFDDQD 112

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L+           K +    +      L++ +    +    + D      + +S     
Sbjct: 113 QLALL---------KELTELWLQNDKDLLQQLVSALSNWKNDLIDPAQAAALARSERD-- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L  +    Y+E  +   VLDF+DLI+    LLK+ +    +R +    + ++L+DE QD
Sbjct: 162 RLFAHCYRLYDEHLRACNVLDFDDLILLPTLLLKRNEE---VRERWQNRLRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L            S      VGD+ QSIYS+ GA P+ +   ++   + 
Sbjct: 219 TNTSQYELVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLSLLQQDFPQ- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +       S              G 
Sbjct: 268 -------LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLYSEL------------GY 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +  + + + ++                          A R+            + ++  
Sbjct: 309 GEELKIITANNED-----------------------HEAERVV---------GELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            R  Q  D  +L R    + L   +        +I    +          IKDL+A  R 
Sbjct: 337 IRKTQYGDYAILYRGNHQSRLFEKVL----MQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + + EDD +F+ ++ +P        + K+         +++            +  G+  
Sbjct: 393 LTNPEDDSAFLRVVNTPKREIGPATLQKLGEWANQRNRSLFNASFDMGLSQTLSGRGLES 452

Query: 481 FQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
            Q   +++ E+  +A+        D    +       +   S    E  +  ++    + 
Sbjct: 453 LQRFTQWMGEIARLAEQEPVKAVRDLIHGLDYESWLYETSPSPKAAEMRMKNVNTLFTWM 512

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  + +   +L ++++         +       ++V++MT+H +KGLE P V+LV 
Sbjct: 513 TEMLEGSDLDEPMTLTQVVTRFTLRDMMERNEAEEELDQVQLMTLHASKGLEFPYVYLVG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       +   +E  RL Y
Sbjct: 573 MEEGLLPHQTSID-----------------------------------EDNVDEERRLAY 597

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA  +L            +  +      + +   +D   +  +   S  +      
Sbjct: 598 VGITRAQKELTFTLCRERRQYGELIRPEPSRFLLELPQDDVMWETERKVASPQERMQKGQ 657

Query: 713 EWSTHHPENTPLEREET 729
               +        R++ 
Sbjct: 658 NHLANLRAQLAKARDKE 674


>gi|281180827|dbj|BAI57157.1| DNA helicase Rep [Escherichia coli SE15]
          Length = 673

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 IWEQERKVVSAEE 651


>gi|317488584|ref|ZP_07947129.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA]
 gi|325832008|ref|ZP_08165105.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1]
 gi|316912326|gb|EFV33890.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA]
 gi|325486329|gb|EGC88781.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1]
          Length = 813

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 101/741 (13%), Positives = 202/741 (27%), Gaps = 183/741 (24%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+    +    V+                + ++   L            
Sbjct: 28  GAGSGKTRVLTYRIANLIENHDVAPWEILAITFTNKAAAEMRERLNGLVGPRCRGMWVST 87

Query: 66  FSLL---------SSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F  +              T+ FT       + + K+     +       +    +     
Sbjct: 88  FHSMCVRMLRSDAEKLGFTRNFTIYDTDDQKRLYKEIMAELDIDPKRFPVNALMNRISTA 147

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++       F+         +A  + +  +E  K     DF+DL++    LLK  +    
Sbjct: 148 KNELVVPSAFEKEAGDPVGKVASRVYSRLQERLKAANAFDFDDLLLYAYLLLKNHED--- 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R    Q   +I++DE QDT+  Q+ +   L E            + +  VGD+ QSIYS
Sbjct: 205 VRSAYQQRFRYIMVDEYQDTNHAQYSITGLLAE----------GHKNIMVVGDDDQSIYS 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++               ++L  ++RS  ++L   + V +  ++ +   
Sbjct: 255 WRGADLRNILEFEQDYPT--------AHTVKLEQNYRSVGNVLAAANAVIANNQHRKAKK 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                          S  +  +       D   +        R 
Sbjct: 307 LF----------------------------TSAEDGDKIQVYMAADERDEG-------RW 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I                 +    + V  R    + ++  +         +      
Sbjct: 332 IAGEIEKQRAAG----------LSYNQVAVFYRTNAQSRMLEDML----LRAGVPYRIVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   I+D+MA    +++  DD++   ++  P     +  I +I     E    + 
Sbjct: 378 GTRFFDRAEIRDVMAYLTLVVNPADDIAAKRVINVPRRGIGKTTIERIEQFAREMGMTFM 437

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGN 523
              + A           + I E + +                +I+          +   +
Sbjct: 438 EGAELAIVDPELRASARQAIGEFVGLVNEARTYGGDLRKVIEMIIDKSGLIGALQAENTD 497

Query: 524 EVI---DVLDEFLNFTLRNEQNSYS------------------------------SLQEL 550
           E     + + EFL       +                                  S    
Sbjct: 498 EARGRIENIQEFLGVVDEFTETHEDEDALYEAPTAEPADAPALAPVPSSADAPAGSFYAF 557

Query: 551 --ISELEQYPPTIKRA----------------------HSANHNEVRIMTVHTAKGLESP 586
              +EL                                 + + + V +MTVH++KGLE  
Sbjct: 558 AGANELAAPAEESPVRVLRGDSLADFIEWVRLRTDLDTVAEDGHAVTMMTVHSSKGLEFD 617

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+      +F H +                                       +  EE
Sbjct: 618 CVFVAGMEETLFPHMNSVG----------------------------------DAAGIEE 643

Query: 647 YNRLLYVGMTRASDQLIICKH 667
             RL YV +TRA  +L +   
Sbjct: 644 ERRLAYVAITRARKKLFLTCA 664


>gi|319764580|ref|YP_004128517.1| uvrd/rep helicase [Alicycliphilus denitrificans BC]
 gi|317119141|gb|ADV01630.1| UvrD/REP helicase [Alicycliphilus denitrificans BC]
          Length = 686

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 98/597 (16%), Positives = 180/597 (30%), Gaps = 119/597 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YEE       +DF+DLI     LL+       +R K  + + H+L+DE QDT+ 
Sbjct: 162 ALIMQRYEERLSAYQSVDFDDLIGMPMRLLRHHPE---VREKWQRLLGHVLVDEYQDTNA 218

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  +               AVGD+ QSIY + GA    + +  +   +    
Sbjct: 219 TQYELLKYLVGE----------RARFTAVGDDDQSIYGWRGATLDNLKKLPQDFPQ---- 264

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST+ IL   + V                                L
Sbjct: 265 ----LKVIKLEQNYRSTSAILRAANNVIGPNPK--------------------------L 294

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           + + +     +  P +              +    A R    I  +              
Sbjct: 295 FPKTLFSELGEGEPVRVV---------DCDNEEHEAERAVARIQGLRA-------ASNPP 338

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  +L R            R       I    +      D   IKDL A  R  ++
Sbjct: 339 PAWKDFAILYRANHQAKPFEKALR----KANIPYKVSGGTSFFDRAEIKDLCAWFRLWIN 394

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQH 483
            +DD +F+  + SP        +  +        ++++  +            G+     
Sbjct: 395 NDDDPAFLRAVTSPRRGVGHTTLGALGEFATQHKQSMFGALFNAMLPAVIPKRGLEGLLE 454

Query: 484 VIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLN 534
             + I++L H A+     +    F    L      Q       +E         + EF +
Sbjct: 455 FGRTINDLEHRARHTHGAENARAFLADWLKEIGYEQHLYDGEDSEKVAAARWSNVLEFCD 514

Query: 535 FTLRNE----------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
           +  +            Q+   SL E+   +               + V + T+H +KGLE
Sbjct: 515 WMAQRAGGQVEEGTGLQSETKSLLEVAQTIALLS--TISEREQEQDMVVLSTLHASKGLE 572

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            P V L      +                               +      +     +  
Sbjct: 573 WPHVILAGVTEGMLPF------------------------KLDDDEGRQQKVADDVAARL 608

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           +E  RL+YVG+TRA   L +         ++         + +   +    ++    
Sbjct: 609 QEERRLMYVGITRAQRTLAVSWTKKRKKGREMVACQPSRFIAEMKLDAATARENPRD 665


>gi|226947150|ref|YP_002802223.1| exodeoxyribonuclease V subunit beta [Azotobacter vinelandii DJ]
 gi|226722077|gb|ACO81248.1| exodeoxyribonuclease V, beta subunit [Azotobacter vinelandii DJ]
          Length = 1226

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 148/1017 (14%), Positives = 293/1017 (28%), Gaps = 163/1017 (16%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKK-----AQTLQQ 55
            L+        E      K+ W     ++  +      +       I  +      + L+ 
Sbjct: 221  LERALAEQAGELAR--LKEGWNAWADELEALLDAAVQAKRVDGRKIQARYYRPWCEKLRA 278

Query: 56   ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
             +     +          LT +   +      +         E ++        +     
Sbjct: 279  WAVGDGTDLDLGS-GFARLTPEGLAEAW----KGESPRHPALEAMRALPARLRTLSGPDE 333

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
              +           A +++  +E+ K++   + F+D++   +  L+  +    +   I  
Sbjct: 334  PARRH--------AAAWVSLRFEQEKRRRAEMGFDDMLSRLDAALRGDNGGR-LAELIRG 384

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +    LIDE QDT  +Q+ +   +         ++ +   LF +GD KQ+IY+F GA+  
Sbjct: 385  QFPVALIDEFQDTDPLQYRIFDRIYA-----IASNRADCGLFLIGDPKQAIYAFRGADIH 439

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA----QGLSEDS 291
              LR ++           +     L  +FRS+  +++ V++VF + E             
Sbjct: 440  TYLRARQA---------TEGRHYNLETNFRSSQALVSAVNRVFRLAERREAGHGAFLFRD 490

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS-LPQESSASILARRIA 350
             TT       +G  G  ++W+           P    W    ++ LP  +  + +A R A
Sbjct: 491  GTTNPLPFLEVGAQGREEVWQI-----GGNAQPALNLWHLEDEAPLPGGAYRAQMAERAA 545

Query: 351  YTISNMIGTDTIFSNGKKR-----VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              I  ++        G  R      ++  DI +LVR  K+   I             SV 
Sbjct: 546  SEIVRLLNLGQRGGAGFVRDGRLQPLRPSDIAILVRDFKEAEAIRGQLAA---RGVRSVY 602

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             +D+  +      +DL+   R     + D      L S     +  ++ ++         
Sbjct: 603  LSDKDSVFASPEARDLLLWLRACAEPDVDRPLRAALASRSLGLALAELEELNRD------ 656

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
              E I +        ++   +    L  + Q     D    ++    G +   +      
Sbjct: 657  --ERIWERRVMQFRGYRQRWQRQGVLPMLHQLLHDFDLPQRLMARPDGERALTNLL---- 710

Query: 526  IDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
               L E L      L  EQ     L EL++   Q          ++   VR++T+H +KG
Sbjct: 711  --HLAELLQRAAAGLDGEQALIRHLSELLAGEIQVAEEQVLRLESDAALVRVVTIHKSKG 768

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE P+VFL    +                    P       + +       D +    + 
Sbjct: 769  LEYPLVFLPFVCA------------FRAVEGGRPLWVYDGERRRLVLTPGEDEVARADRE 816

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
               E  RLLYV +TRA     +          + ++     + Y         +   L +
Sbjct: 817  RLGEELRLLYVALTRARHACWLGVADLCVGNARKSRLHDSALGYLLGGAVPLERSAALAD 876

Query: 703  SINKDEWIAYEWSTHHPENT---------PLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             +   +          PE +            + +         +               
Sbjct: 877  WLAPLDVAGESAVLEAPEASGERFVEQAVARSKPQWRTPARSAAEHWWIASYSALRIGAG 936

Query: 754  PYILNPSTI------DTKGKTNL---------------------ESLLSDNQTFNRGLII 786
               L  S I      D    +                        +L    +  N G  +
Sbjct: 937  EERLADSQIPASRFDDAAPDSPAAQKVADDERESVFVPLRAGETPTLHRFPRGPNPGTFL 996

Query: 787  HKLLQV--------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE----- 833
            H LL++        +   P   R+        +    W       LL  +TR L      
Sbjct: 997  HGLLEMAGREGFAALAAEPARLRELIARRCQLRGMTEWIDPLADWLLDLLTRPLALGGDR 1056

Query: 834  ----------NPMMTTAMSC---DSYS--EVSVSGKINCPKKDII--------ISGRIDQ 870
                       P +         D     E+     +    +  +          G ID 
Sbjct: 1057 CVALVGLGQYQPELEFWFEARAVDVRRIDELVQERVLPGLSRPALAKDRLNGMFKGFIDL 1116

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSIYEKILKDSYPNK 918
                    ++ +YK++     +  +           + +  Q  +Y   L      +
Sbjct: 1117 AFEHGGRYYLLDYKSNWLGEGDAAYSAEAMAATAASHRYDLQSVLYLLALHRQLRAR 1173


>gi|33592640|ref|NP_880284.1| putative nuclease/helicase [Bordetella pertussis Tohama I]
 gi|33572286|emb|CAE41838.1| putative nuclease/helicase [Bordetella pertussis Tohama I]
          Length = 1134

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 142/1003 (14%), Positives = 271/1003 (27%), Gaps = 145/1003 (14%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYV----SLSMETGNPTILKKAQTLQQASQ 58
            +R GL  +   E +  +L  L        ++ +     L+      +   +   LQ    
Sbjct: 207  DRDGLEASL-AEALEHELDSLCGQLPRGWSQALCGPARLAAAALAGSGDARLAALQDWDA 265

Query: 59   TQCIE----ERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKK------ 102
                     +++  L+   LT     +      KN+               L        
Sbjct: 266  PLPPMAEALDQWRALAHLLLTGTGALRSPKGVNKNLGFPAGCDHKEPFTAWLAACDGGAP 325

Query: 103  ---SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
               +      + D   +   +    A LT      A       +   +DF ++       
Sbjct: 326  WVRALAAVRDMPDAHFSDAQWDVLSAQLTTLALSVAQLRVQFARAGEVDFIEIAQRAAYA 385

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            L   D    +  K+D  I H+LIDE QDTS  Q +++ +LT  +  G       RTLF V
Sbjct: 386  LGSGDDPGELLLKLDASIRHLLIDEFQDTSQGQIDLLATLTAGWQDGDG-----RTLFLV 440

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD  QSIY F  AE    L+              +   ++L  +FRS   ++  V++VF+
Sbjct: 441  GDPMQSIYRFRKAEVGLFLQVAER-----GVGQIRPGFLQLTDNFRSQGGVVDWVNRVFA 495

Query: 280  I-PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                 A      +       +      G   L+                           
Sbjct: 496  QLLPRANDADSGAIAYSPSTAFHETAPGEAVLF-------------------HPAWECGD 536

Query: 339  ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +SA   A  IA     ++        G +       + +LVR R               
Sbjct: 537  AASAERQAEDIA---VGLVRAALAEHEGSRHP-----VAILVRARSHLGS----LTRRLA 584

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC- 457
               I     +   L     + DL+ L R +    D L+++ +L++P    +   + ++  
Sbjct: 585  QEGIPCRAVELVPLGLRPVVADLVQLARALAHPGDRLAWLSVLRAPWCGLTLTSLQRLFG 644

Query: 458  -------------------TQRHETETVYEYI-------QKFANCGISKFQHVIKYIHEL 491
                                      ++++         Q  A     + + V   + + 
Sbjct: 645  ADQLTPVPTLLERALRGAARSEGGQGSLFDAPAPGCLAEQALAPDEYRRLRAVAAILLDR 704

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
             + A       +   +     G   +         + L + +     +       L   +
Sbjct: 705  ANDAGLLPLAAWLEQLWRRLGGPGLYAGSSAASDAESLFQLIERLAPHGGLDAGLLDTAV 764

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            + L           +     V IMT+H +KGL+   V L               +    S
Sbjct: 765  ARLFAA-----PQATGEQGTVEIMTMHKSKGLQFDTVILYGLHRAPR-GDQAPLVRFEQS 818

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                   PI        + +   L     +    E +RL YV  TRA  +L +  H    
Sbjct: 819  RGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDRLFYVAATRARQRLHLVAHVAVD 878

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
                                     +   + S+    W                     +
Sbjct: 879  AASGQ-------------------ARTPASASLLGRLWPHLSVPQPPDVAQDQAAATGEQ 919

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT---FNRGLIIHK 788
              +  + + +   + + +          +     G    E      +       G + H 
Sbjct: 920  PALVGEPLRRLAGAGLASLAARTLPREAAAGVYGGGQGAEHPSWQLEAGYDAAVGTLAHA 979

Query: 789  LL--------QVIFTLPEHKRKNFITSYCTKNA--KLWPAKEYKNLLLSITRLLENPMMT 838
             L        Q         R   +    T+            + +L ++   L++    
Sbjct: 980  WLARIGGDGPQHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDERGR 1039

Query: 839  TAMS-CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH-----VPQE 892
              +    +  E      +      + +   ID    ++    I +YKT          Q 
Sbjct: 1040 WLLGQARARREWP----LIDAAGRVSV---IDLALSTEDGWLIVDYKTGRPHEHETPEQF 1092

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
               +   H  QL  Y   +      +     L +        +
Sbjct: 1093 AIRMRQRHGEQLMRYCAQVTALD-GRPARAALYFPRARAWIDL 1134


>gi|319934767|ref|ZP_08009212.1| hypothetical protein HMPREF9488_00043 [Coprobacillus sp. 29_1]
 gi|319810144|gb|EFW06506.1| hypothetical protein HMPREF9488_00043 [Coprobacillus sp. 29_1]
          Length = 1203

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 116/557 (20%), Positives = 212/557 (38%), Gaps = 35/557 (6%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L       Y+E KK+   LDF DL    + LL+ +     + Y     +  I++DE QDT
Sbjct: 354 LLNQFQNAYQERKKQLNQLDFSDLERYAHQLLEPQYGIVDVLY---HRLKEIMVDEYQDT 410

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ  ++  ++E              LF VGD KQSIY F  A+P+    +        
Sbjct: 411 NQIQESLLLKISEY-------QQPAIPLFMVGDMKQSIYRFRQADPQIFSDKYDTFSLSD 463

Query: 249 TNAGQKF-SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            +  +     I+L  ++RS+  +L  ++ +F+   +      +       R +       
Sbjct: 464 EDCQKTHTRRIDLVFNYRSSKIVLDSINYIFNQIMDKDIGGLEYYLDDSARLNYDYVGKE 523

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E   ++  S+ +   E     ++           A  +A  I  +     I    +
Sbjct: 524 NNQKESARTRFFSEKHLATEILIDIYNPASSLDKEQYEAHMVAQKILKLKQEMKI----Q 579

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +  KD++VL+R          +     + Y+I         L +   I+++M   + 
Sbjct: 580 NKPVDFKDMVVLMRSTVSFLTFKKVF----DLYQIPNHIVLSQGLMNSNEIENMMTFLQG 635

Query: 428 ILSQEDDLSFVCMLKSP--LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           +    DD++ + +L+ P  + N   + I K+ T   E  ++YE     +     +    +
Sbjct: 636 LAHPYDDIALLSILRQPYTMSNIDMETIAKLRTDHKE-ISLYEC---LSLSSDKRVIDFL 691

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSY 544
              +EL   +   SP++    I               G++    LD FL   L+  Q   
Sbjct: 692 DIFNELRLYSYTHSPYEVLKEIYRLTDYPLFVSKLINGSQRKSNLDLFLEIVLQ-TQEQN 750

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEV-RIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             L ELI  L+          S+  + V   MT+H +KGLE P+VF+ +   Q  +    
Sbjct: 751 PYLAELIETLKNSSDFAPAQSSSESDNVVEFMTIHKSKGLEFPIVFVCNMHKQFNTQDSK 810

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD-------LIKHLKKSTQEEYNRLLYVGMT 656
           ++M I   L       +        N I+         + +     +  E  R+ YV +T
Sbjct: 811 ERMMIDKRLGIALKPRMRKNTENLNNLIIEYENCYRNMIARRQLDESINEEMRIFYVALT 870

Query: 657 RASDQLIICKHSNTSNE 673
           RAS +LI+     + +E
Sbjct: 871 RASHKLILTGVLKSIDE 887



 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 18/226 (7%)

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN- 777
             ++ P  ++E++      Q+  +    P   D+ +P  ++ + +      +  SL  D  
Sbjct: 985  EQSIPKRQKESLTMNGTIQEHYRSFKYP--FDLEKPKTMSVTQLQAIADDHYLSLAKDEE 1042

Query: 778  ----QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL---LSITR 830
                   ++G ++  LL    +  E   +  I      +  L+     + LL     I  
Sbjct: 1043 TALMTATDKGTLV-HLLLSHLSFQEDHIEQLINQLYENH--LYNEDGRQVLLAYQDQIYG 1099

Query: 831  LLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
             + +            Y E   S        D +I G  D + + +  +++ +YKT    
Sbjct: 1100 FIHSDYYQMIKEASYIYKEKPFSY--YDKNLDQVIHGIFDLVFVYKDQLYVLDYKTDRIS 1157

Query: 890  PQEIEH-IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
                E  +   H  QL+ Y+++LKD Y    +  ++ Y+   K   
Sbjct: 1158 KNNSEDALIEKHKVQLNYYQRVLKDMYKQD-IKAIVYYLHISKGVE 1202


>gi|323525707|ref|YP_004227860.1| exodeoxyribonuclease V subunit beta [Burkholderia sp. CCGE1001]
 gi|323382709|gb|ADX54800.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1001]
          Length = 1235

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 131/1000 (13%), Positives = 285/1000 (28%), Gaps = 139/1000 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK---KAQTLQQASQTQCI 62
            G       +  +     L + +   I   ++ + +  + T  K    +  +   ++    
Sbjct: 222  GAQTGADPQTSFDAACELWHAERDAIVSLLAEAEDRLSKTTHKPDHVSAAIAAWTEYFAQ 281

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
             +  +      L    +  K     + +       E   ++    +   +  +  +  + 
Sbjct: 282  GDCHAPPPRAALKLTASALKKATKVKFDPPEHAFFEH-AEALSAAVVAAEAAHRARWLEL 340

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
              + L  A    A     K+   V+ F+DL+ N    L       W+   +       LI
Sbjct: 341  MQSWLDYAP---AELAARKRTRRVVSFDDLLSNLYRALAAHP---WLADALRARYPAALI 394

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT  +Q+ +   +                LF VGD KQ+IYSF  A+         
Sbjct: 395  DEFQDTDPLQFAIFSRIFA----------PAGPLFLVGDPKQAIYSFRAAD--------- 435

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                         +   L ++ RSTA I+   +++F     A  L       +R    R 
Sbjct: 436  -LHTYLAARASASARYTLAVNQRSTAPIVEACNRIFEANPQAFVLDGLDYQPVRAGERRR 494

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA-RRIAYTISNMIGTDT 361
                             +     +       ++   +  A   A    A  I  ++    
Sbjct: 495  A--------PFFDPDGGAGAGDFRIWMLPPGETALTKREAQREASEACAAEIVRLLRGAR 546

Query: 362  IFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                      +   +I VLV+  K   LI  +       + +  V   +  +   L  + 
Sbjct: 547  EGKVTIGDAPLAPGNIAVLVQTHKQGSLIKRVLAA----WGVGSVELAQASVFATLDAEQ 602

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            +  +   + +  D       L +         ++++           +        G   
Sbjct: 603  IERVLAAVDTPGDLRRLRAALATDWLGLDAAALWRLEQTADAPAVADDPAHAADAMGW-- 660

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFT 536
                ++       +         +  ++   +  Q+ ++    E      + L E +   
Sbjct: 661  ----VERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAAPDGERRLTNVNHLAELVQAR 716

Query: 537  LRNEQNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                Q    +L+ L ++  Q      +    ++ N V+I+TVH +KGLE  VVF      
Sbjct: 717  AATHQGIAPTLRWLAAQRAQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLND 776

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                      +      +D  G  +        +       +H  +    E  RL+YV +
Sbjct: 777  GGLREPPSSALPNAREYHDPCGDAVLHYGC--DDEEAERAARHATREQAAERARLVYVAL 834

Query: 656  TRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            TRA  +  +    + ++ + K+S +     +V  + H+ +         +     W A  
Sbjct: 835  TRAVYRCYLVAGTYQSSRSTKESRRSVLNWLVAGAGHDFDDWLAEPPGEAELSSRWQALA 894

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                  +  P        + M ++   K+  +  +   ++  + + S +   G    E+ 
Sbjct: 895  GGPLAVQPLPKVERRQPLESMQDRGAEKRARTHRRPLRDQWRMASFSGLIAAGSKAEEAQ 954

Query: 774  ----------------------------------------LSDNQTFNRGLIIHKLLQVI 793
                                                    L+  +    G  +H++ ++ 
Sbjct: 955  PAVEEVRPDHDEIADELVVTPQPLLAPAAQQISSLAADDILAFPRGAAAGECLHRMFELA 1014

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCD 844
                 H   + I     +       +    L   + +LL +           +       
Sbjct: 1015 DFSDPHSWPDAIRGALRERPAPASPELAPRLPAMMHKLLADVVSTELVPGMTLGQLDPRR 1074

Query: 845  SYSEVSV----------------------SGKINCPKKDIIISGRIDQISISQQNIFIFE 882
              +E+                           +        + G ID I       +I +
Sbjct: 1075 RLNELEFLFAAPSLDFTALRGLLVEHGYPDVALEPGGLRGFVKGFIDMIVEHDGRFWIVD 1134

Query: 883  YKTHHH---------VPQEIEHIPYTHIAQLSIYEKILKD 913
            +K++H           P E     + +  Q  +Y   L  
Sbjct: 1135 WKSNHLGDTAQDYGAAPLEAAMASHAYHLQALLYTVALHR 1174


>gi|75758386|ref|ZP_00738509.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74494112|gb|EAO57205.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 653

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 106/556 (19%), Positives = 184/556 (33%), Gaps = 123/556 (22%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
              ++   YE+ K  +   D++DL++ T  L +       +  +      ++L+DE QDT
Sbjct: 171 AVSHIYQKYEDLKAIHNYFDYDDLLLKTVHLFQNNPE---LLGRYQNLFRYVLVDEFQDT 227

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ+++I  L++              +F VGD  QSIYSF  A+ + +L          
Sbjct: 228 NKIQFDLIEMLSQ----------KHGNIFLVGDADQSIYSFRSAKIENILS--------Y 269

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                +  +I L  ++RST +I+   + +    +        S + +             
Sbjct: 270 QKIHPETQLILLQENYRSTQNIVNASNSLVGNNKMRLEREAFSVSGV------------- 316

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                                  + D+  +       A  +A  I NM          K 
Sbjct: 317 ---------------GDDIHVFRFNDASRE-------ADFVARMIVNM---------KKA 345

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                KD  VL R    +  +    R    D  I           D   IKDL++  R  
Sbjct: 346 TQCDWKDFAVLYRMNFQSKHLELALR----DENIPYKIVGTTSFYDRKEIKDLVSYIRAS 401

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----------EYIQKFANCGI 478
            +  DD +   ++  P     +  I KI    HE    +            + K     +
Sbjct: 402 HNLTDDYALERVINVPSRKIGKTTIEKIYAFAHERRIPFFVALQNIDEVAALSKINKSTV 461

Query: 479 SKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQF--ISRFGNEVIDVLDEFLN 534
           +K +     + EL  +A     S   F   ++       QF          I+ +    +
Sbjct: 462 AKIKEFATLMQELSQLALVGEFSATKFMQTLIKKTDFMGQFDKEKEEDETRIENVTHLRD 521

Query: 535 FTL--RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           +      ++   +SL + +SE+     + +         V + +VH+AKGLE P  F++ 
Sbjct: 522 YARHWDAQEKEINSLAQFVSEITLDGDSDEDEED----FVTLTSVHSAKGLEWPETFVIG 577

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF H                                       K S  EE  RL+Y
Sbjct: 578 LEDDVFPH----------------------------------YRSKQKLSDLEEERRLMY 603

Query: 653 VGMTRASDQLIICKHS 668
           V MTRA  +L +   +
Sbjct: 604 VAMTRAGKRLYLTHSA 619


>gi|71279749|ref|YP_269480.1| exodeoxyribonuclease V subunit beta [Colwellia psychrerythraea 34H]
 gi|71145489|gb|AAZ25962.1| exodeoxyribonuclease V, beta subunit [Colwellia psychrerythraea 34H]
          Length = 1286

 Score =  245 bits (625), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 152/1051 (14%), Positives = 298/1051 (28%), Gaps = 199/1051 (18%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL-- 69
              E I  +   L       +     L  E G   + K A   ++  +   ++     +  
Sbjct: 219  DVESIEAEFIVLVRLAAQTLTANSDLF-ENGLILVKKGADQEKRRDELSQLKIWLESIIS 277

Query: 70   SSFFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                L      +  +               K +L ++     +++++        +   +
Sbjct: 278  KELSLLDVGEGKVKMPDGFFDGKRYARSTYKAELLEAFAPVKEVKEQVKKIANNINKARA 337

Query: 127  LTLAKY----LNAHYEEAKKKNCVLDFEDLIINTNDLLKKR----DVSAWIRYKIDQEIN 178
              + K     +     E KK   +LDF+DLI    + L+      + S  +  ++  +  
Sbjct: 338  YGIVKSGIYIIRQQVIEQKKALNLLDFDDLINTLANCLQSDSSGDEHSQLLAKQLLAQYP 397

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
              LIDE QDT   Q+ +++S+      G N   +   LF +GD KQ+IY F G +    L
Sbjct: 398  VALIDEFQDTDPKQFGILQSIY----YGDNAKKANAGLFLIGDPKQAIYGFRGGDIFAYL 453

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +                  +  ++RST  ++   ++ F+   N     E  +  +  +
Sbjct: 454  NAR----------SGCDHHWLMDTNWRSTPQMIEGYNQFFTYKRNGSSSEETVSNEVNKQ 503

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCN-----------------PQQESWTSYFDSLPQESS 341
             S       +     +  +  +Q                    +  + T+       + S
Sbjct: 504  QSESVFGFGIPYLPVLAGKKSAQAQQVILDSDKALQFIHFTNDETSNDTNPQGDKVSQGS 563

Query: 342  ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
              +LA   A  I  ++ +           +  KDI +LVR   +   I    +    D  
Sbjct: 564  RPMLANWCANEIVTLLASKEQTGK-----VNPKDIAILVRDGAEARDIKHALQQAGLD-- 616

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  +DR  L      K L+ L + +L  E++  FV  L   L  F    + ++     
Sbjct: 617  -SVFLSDRANLFHSQQAKQLLGLLKGVLLPENERLFVAALSCGLLGFDAKKLHQLQQDEM 675

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG--AKKGRQQFIS 519
              +T+                  + Y  +           +    +L        +   +
Sbjct: 676  AYQTLKFA--------------FVDYRTQWQRQGFITMAINLMHNLLDVPQNNKDRCLTN 721

Query: 520  RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS--ELEQYPPTIKRAHSANHNEVRIMTV 577
                     L E L             L        LE      +    ++ + +R++T 
Sbjct: 722  VL------HLFEILQAASVRLSQGQELLHWFEQQCHLETNDVEAELRLESDGDLIRLITQ 775

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGLE P VF+          K   K       +D  G            +   +  K
Sbjct: 776  HGSKGLEYPYVFIPFACRHKDPLKFGNKSVSYLEYHDANGKL------CLSLDGSKEAKK 829

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLII------CKHSNTSNEKKSNQRT-----WYDMVY 686
             +      E  RLLYV +TRA  +  +        H +   +    Q          ++ 
Sbjct: 830  AMSNEAYAESIRLLYVAITRAERRCYVLCCAFDAYHLSPLGKTLQFQEQESIIKPLQVLK 889

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
             S  +   ++++ L  SI+       E + H P+N+P E   T       +       S 
Sbjct: 890  ASAEHAIGIREVSLDCSIDLYLEKNDEAALHQPKNSPQEFANTEVSKFIGKIERDWWLSS 949

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDN-------------------QTFNRGLIIH 787
                         S  D          L  +                   +  + G ++H
Sbjct: 950  FTALSRNIRHAGVSNPDRDTTDIANRQLDTDSEHTDIELLSAEQICFKLSKGAHTGNLLH 1009

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE--------YKNLLLSITRLLENPM--- 836
             +L+      E   +  +        +L  +            +L+  + +++  P    
Sbjct: 1010 DILEQ-TDFSEPDWQESLEKPLLAYGELNASNANSISTSFTSDDLIQWLEQVISAPFISS 1068

Query: 837  --------------MTTAMSCDSYSEVSVSGKINCPKKDII------------------- 863
                          +       +  E      +     + +                   
Sbjct: 1069 HHSALTTDSENAGCLADIAFNRTLRESEFYFPMQGEGTNALANLLTDHRNRAERTDTGNS 1128

Query: 864  --------------------------------ISGRIDQISISQQNIFIFEYKTHHHVPQ 891
                                            + G ID I   Q   ++ +YK+ H    
Sbjct: 1129 ISTGRNSGISKTLNNTLKYPVMLPSYKKLSGMMHGFIDLIFEYQGKYYLCDYKSSHLGDS 1188

Query: 892  EIEHIPYT---------HIAQLSIYEKILKD 913
              ++             +  Q  IY   L  
Sbjct: 1189 FQDYQFDALLDNVEKNYYDLQYLIYSLALHR 1219


>gi|314923613|gb|EFS87444.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL001PA1]
          Length = 1078

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 124/865 (14%), Positives = 245/865 (28%), Gaps = 140/865 (16%)

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            +        K   V  F+DLI +    L+           +      +++DE QDT  +Q
Sbjct: 208  VREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQ 267

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            WE++R                  L+ +GD KQSIY+F GA+        +          
Sbjct: 268  WEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ---------- 307

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGTVQL 310
                ++ L +++R+   I+  V+ +FS  +   G+S +  +      R       G    
Sbjct: 308  SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHGISMELVTAHHQESRIKTATTDGPRYH 367

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            W Q       Q     +  T+  D    E         +   I  + G   +      R 
Sbjct: 368  WSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDGLRP 420

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++  DI +LVR R+    +               V +    +    A +DLM L   + +
Sbjct: 421  LRPNDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLMTLLEALEN 476

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              D+     +  S L   +  D+    ++      +              +  V   +H 
Sbjct: 477  -TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAVLHR 535

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                            ++    G +             +             + ++   +
Sbjct: 536  ----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATAAWI 580

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    +  
Sbjct: 581  REQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWH 640

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
               D     + I    +  +I    ++  ++  + E  RLLYV +TRA   + +      
Sbjct: 641  ---DGQRRVLNISSQGTDRSI---AVESHEEDERGENLRLLYVALTRARSAVRLWWSPCP 694

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               ++     +  +V       E    +  T+        +   +T            ++
Sbjct: 695  ---RRHRWSAFQRLVEMDRTTGELGLGVAGTDPGTLPWLNSGPIATVIAPTNQKLLTRSV 751

Query: 731  KQLMDEQKIPKKLFSPIKNDINEP----------YILNPSTIDTKGKTNLESLLSDNQT- 779
                     P+ L  P+                   ++ S  +      ++    D+   
Sbjct: 752  SAQARACVAPRTLTRPLDTAFARTSYSGLTANLHAAVSESMTNNLIDEPVDDESVDDTAP 811

Query: 780  --------FNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLSITR 830
                     + G ++H  L+ I T         +  +         P      L  S+ +
Sbjct: 812  GLCGLPGGTSFGTLVHTALEYIDTAATDLSSEVLSITRRALRMSPLPDVPPSELATSLEQ 871

Query: 831  LLENPM--------MTTAMSCDSYSEVSVSGKIN-------------------------- 856
            +L + +        +      D  +E++    +                           
Sbjct: 872  VLHSDLGPLAPGMTLADFSPADRLAEMNFELAMTQHGRSTTMTDLASLLCDPSLVPPDDP 931

Query: 857  ----------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQE--------- 892
                       P  D  + G     ID +         + +YKT+               
Sbjct: 932  ISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDA 991

Query: 893  ----IEHIPYTHIAQLSIYEKILKD 913
                       +  Q  +Y   L  
Sbjct: 992  HTMRAIMFSSHYPLQGLLYSAALHR 1016


>gi|228904778|ref|ZP_04068832.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
 gi|228854792|gb|EEM99396.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
          Length = 644

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 106/556 (19%), Positives = 184/556 (33%), Gaps = 123/556 (22%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
              ++   YE+ K  +   D++DL++ T  L +       +  +      ++L+DE QDT
Sbjct: 162 AVSHIYQKYEDLKAIHNYFDYDDLLLKTVHLFQNNPE---LLGRYQNLFRYVLVDEFQDT 218

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ+++I  L++              +F VGD  QSIYSF  A+ + +L          
Sbjct: 219 NKIQFDLIEMLSQ----------KHGNIFLVGDADQSIYSFRSAKIENILS--------Y 260

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                +  +I L  ++RST +I+   + +    +        S + +             
Sbjct: 261 QKIHPETQLILLQENYRSTQNIVNASNSLVGNNKMRLEREAFSVSGV------------- 307

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                                  + D+  +       A  +A  I NM          K 
Sbjct: 308 ---------------GDDIHVFRFNDASRE-------ADFVARMIVNM---------KKA 336

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                KD  VL R    +  +    R    D  I           D   IKDL++  R  
Sbjct: 337 TQCDWKDFAVLYRMNFQSKHLELALR----DENIPYKIVGTTSFYDRKEIKDLVSYIRAS 392

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----------EYIQKFANCGI 478
            +  DD +   ++  P     +  I KI    HE    +            + K     +
Sbjct: 393 HNLTDDYALERVINVPSRKIGKTTIEKIYAFAHERRIPFFVALQNIDEVAALSKINKSTV 452

Query: 479 SKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQF--ISRFGNEVIDVLDEFLN 534
           +K +     + EL  +A     S   F   ++       QF          I+ +    +
Sbjct: 453 AKIKEFATLMQELSQLALVGEFSATKFMQTLIKKTDFMGQFDKEKEEDETRIENVTHLRD 512

Query: 535 FTL--RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           +      ++   +SL + +SE+     + +         V + +VH+AKGLE P  F++ 
Sbjct: 513 YARHWDAQEKEINSLAQFVSEITLDGDSDEDEED----FVTLTSVHSAKGLEWPETFVIG 568

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               VF H                                       K S  EE  RL+Y
Sbjct: 569 LEDDVFPH----------------------------------YRSKQKLSDLEEERRLMY 594

Query: 653 VGMTRASDQLIICKHS 668
           V MTRA  +L +   +
Sbjct: 595 VAMTRAGKRLYLTHSA 610


>gi|295130850|ref|YP_003581513.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes SK137]
 gi|291376294|gb|ADE00149.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes SK137]
 gi|313771948|gb|EFS37914.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL074PA1]
 gi|313809677|gb|EFS47411.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL083PA1]
 gi|313830013|gb|EFS67727.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL007PA1]
 gi|313832983|gb|EFS70697.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL056PA1]
 gi|314972840|gb|EFT16937.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL053PA1]
 gi|314975738|gb|EFT19833.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL045PA1]
 gi|314983664|gb|EFT27756.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL005PA1]
 gi|315095783|gb|EFT67759.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL038PA1]
 gi|327329836|gb|EGE71591.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
            HL096PA2]
 gi|327442644|gb|EGE89298.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL043PA1]
 gi|327443718|gb|EGE90372.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL043PA2]
 gi|328761483|gb|EGF75007.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
            HL099PA1]
          Length = 1078

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 124/868 (14%), Positives = 246/868 (28%), Gaps = 140/868 (16%)

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A  +        K   V  F+DLI +    L+           +      +++DE QDT 
Sbjct: 205  ALSVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTD 264

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +QWE++R                  L+ +GD KQSIY+F GA+        +       
Sbjct: 265  PLQWEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ------- 307

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGT 307
                   ++ L +++R+   I+  V+ +FS  +    +S +  +      R       G 
Sbjct: 308  ---SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHDISMELVTAHHQESRIKTAATDGP 364

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               W Q       Q     +  T+  D    E         +   I  + G   +     
Sbjct: 365  RYHWSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDG 417

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LVR R+    +               V +    +    A +DL+ L   
Sbjct: 418  LRPLRPTDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLITLLEA 473

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D+     +  S L   +  D+    ++      +              +  V   
Sbjct: 474  LEN-TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAA 532

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +H                 ++    G +             +             + ++ 
Sbjct: 533  LHR----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATA 577

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    
Sbjct: 578  AWIREQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPI 637

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +     D     + I    +  +I    I+  ++  + E  RLLYV +TRA   + +   
Sbjct: 638  VWH---DGQRRVLDISSQGTDRSI---AIESHEEDERGENLRLLYVALTRARSAVRLWWS 691

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +     +  +V       E    +  T+        +   +T           
Sbjct: 692  PCP---LRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPWLNSGPIATVIAPANQKLLT 748

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYI------LNPSTIDTKGKTNLESLLSDNQ--- 778
             ++        +P+ L  P+               L+ +  +      ++  + D     
Sbjct: 749  RSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDD 808

Query: 779  ----------TFNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLS 827
                        + G ++H +L+ I T         +  +         P      L  S
Sbjct: 809  TAPGLCGLPGGTSFGTLVHTVLEYIDTAAIDLSSEVLSITRRALRMSPLPDVPPSELATS 868

Query: 828  ITRLLENPM--------MTTAMSCDSYSEVSVSGKIN----------------------- 856
            + ++L + +        +      D  +E++    +                        
Sbjct: 869  LEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPP 928

Query: 857  -------------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQEI----- 893
                          P  D  + G     ID +         + +YKT+            
Sbjct: 929  DDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHM 988

Query: 894  --------EHIPYTHIAQLSIYEKILKD 913
                          +  Q  +Y   L  
Sbjct: 989  YDAHTMRTMMFSSHYPLQGLLYSAALHR 1016


>gi|327482729|gb|AEA86039.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri DSM 4166]
          Length = 1182

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 145/1037 (13%), Positives = 294/1037 (28%), Gaps = 155/1037 (14%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +   +     +  W                 +           + ++ A     ++  F+
Sbjct: 199  APVAADLRPVEAAWQRAAELWKQAGSAWIAELLAHGGLSQSTHKRIKFAPWQAELDAYFA 258

Query: 68   LLSSFFLTQKFTPQ--KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
              +  F   +   +     +++   K       +L ++ DE              +    
Sbjct: 259  DPAVMFDQPEGAAKFGVRALSKACKKGFDAPVCELAQALDELADQVADALPAGKQRLIAL 318

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             + L   LN    E K    +L F+DL+   +  L+   V   +   +       LIDE 
Sbjct: 319  QVALLDRLNRELPERKAAQRLLAFDDLLNRLDQALQGP-VGEDLAASLRATYPLALIDEF 377

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT  IQ+ +   +               +L  VGD KQ+IY+F GA+    +  K+   
Sbjct: 378  QDTDPIQYAIFNRIY--------AKGRDASLCFVGDPKQAIYAFRGADLATYMTAKQQ-- 427

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                          LP ++RST +++  ++++F  P+                  R    
Sbjct: 428  -------ADREPFNLPTNYRSTPELIAALNQLFDHPQPFAQPDLRYPAVGAADKPRAS-- 478

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                          +  +           +   + +A+  ARRIA  ++        F+ 
Sbjct: 479  -----LRLAEEGEAAPLSLVWLGDDPLGKAEAAQLAAADTARRIAVQLAAAAEGRAGFAQ 533

Query: 366  G-KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
            G +   ++  DI VLV   +   +I            +  V   R  +       +L A+
Sbjct: 534  GDRFTPLKGGDIAVLVANHRQAGMIADELAA----RGVPSVRRGRDSVWRSEEAGELAAV 589

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
                     +      L + L   S  D+ +    +HE +   E  +++        Q  
Sbjct: 590  LAAYAEPGREGLLRHALATRLLGRSAADLARCQDDQHEWDAEREAAERYHQLWQQ--QGF 647

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            ++     +              +L    G ++  +         L E L      E    
Sbjct: 648  MRVFRAWLDEQ------AVAERLLTRVDGERRLTNLL------HLGELLQA----ESLLR 691

Query: 545  SSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              L+ L++        E           ++   V+I+T+HT+KGLE P+VF         
Sbjct: 692  PGLEPLLAWFNAQRGSEGAGEEALLRLESDAERVQIVTIHTSKGLEYPLVFCPFLWDGKL 751

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              K+        +           P     +  + D ++  ++    E  RL YV +TRA
Sbjct: 752  LGKNQDSARCHDADG--------QPLLDLGSGELEDNLERARQEVFAEQLRLAYVALTRA 803

Query: 659  SDQLIICKHSNTSNEKKSNQR--------TWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             D+L +     +  + K +          +    +             +L N +      
Sbjct: 804  RDRLWLHWGPVSLPKAKKDGSLPDEGLHSSALAWLLHGRELPGEQPLTELGNHLAGLNGG 863

Query: 711  AYEWSTHHPENT--------PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
            +   +      T        PLE  E   Q       P++L    ++  +   I + S +
Sbjct: 864  SLRLAIERLVATSDGRMACLPLESREASTQGSSRAAPPEQLAQLNRSLYSAWRIGSFSGL 923

Query: 763  DT---------------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                                       +  +    G  +H +L+          +    +
Sbjct: 924  AAGMHMEAPDRDALAMPDAGEPGSGFFAFPRGARAGTCLHAILEDWARGKGELTQLVEPA 983

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVS--------- 852
                 A   P          + R+L+  +      + +  +     E+  +         
Sbjct: 984  L---KAYGLPLDWRDIATAQLERVLQTDLDGAGLTLASLQAARRLPELGFTFPVRELDVV 1040

Query: 853  ---------------------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
                                  ++        + G ID         +I +YK++   P+
Sbjct: 1041 RLRTLLTDPANGLAAPLREAAARLEFDSLKGFLKGFIDLTFEHGGRWYIADYKSNWLGPE 1100

Query: 892  E---------IEHIPYTHIAQLSIYEKILKDS-------YPNKSLVCLLIYV-----SEP 930
                             +  Q  IY   L+         + ++ L               
Sbjct: 1101 ASYYGGERLLQALAGEHYYLQYLIYLVALRRFLRQRLADFRDEQLGGAFYLFLRGMPEAG 1160

Query: 931  KVFIIPQNKLNKAFAEI 947
              F  P + L  A   +
Sbjct: 1161 VYFARPDDALLDALDRL 1177


>gi|91782971|ref|YP_558177.1| exodeoxyribonuclease V, beta subunit [Burkholderia xenovorans LB400]
 gi|91686925|gb|ABE30125.1| Exodeoxyribonuclease V, beta subunit [Burkholderia xenovorans LB400]
          Length = 1230

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 126/990 (12%), Positives = 276/990 (27%), Gaps = 134/990 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK---KAQTLQQASQTQCIEERF 66
                +  +     L + +   I   ++ + E  + T  K    +  +   ++     +  
Sbjct: 228  GADPQAGFDAACALWHAERDTIVSLLAEAQERLSKTSHKPDHVSAAIAAWTEYFAQGDCH 287

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            +      L    +  K     +         E  +      +          +       
Sbjct: 288  APPPKAALKLTASALKKATKVKFEPPVHAFFEHAEALAAAVVAAEAAQRARWLSLVQTWL 347

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                  L A     K+   V+ F+DL+ N    L       W+   +       LIDE Q
Sbjct: 348  DYAPAELVAR----KRTRRVVSFDDLLSNLYRALAAHP---WLADALRARYPAALIDEFQ 400

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +Q+ +   +                LF VGD KQ+IYSF  A+    L  +     
Sbjct: 401  DTDPLQFAIFSRIFA----------PAGPLFLVGDPKQAIYSFRAADLHTYLAARE---- 446

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +   L ++ RSTA I+   +++F    +A  L       +R    R     
Sbjct: 447  ------AASACYTLAVNQRSTAPIVEACNRLFEANPHAFVLDGLDYQPVRAGERRR---- 496

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-FSN 365
                         S  + +  +      +L +  +    +   A  I  ++         
Sbjct: 497  -----PPFSDPQASAGDFRIWTLPQGDAALNKREAQREASEACAAEIVRLLRGAREGTVT 551

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +   +I VLV+  K   LI  +       + +  V   +  +      + +  + 
Sbjct: 552  IGDVPLAPGNIAVLVQTHKQGSLIKRVLAA----WGVGSVELAQASVFATPDAEQIERVL 607

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
              + +  D       L +         ++++           +        G       +
Sbjct: 608  AAVDTPGDLRRLRAALATDWLGLDAAALWRLEQVADAPSPADDPAHAADAMGW------V 661

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQ 541
            +       +         +  ++   +  Q+ ++    E      + L E +      + 
Sbjct: 662  ERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAGPDGERRLTNVNHLAELVQARAATQP 721

Query: 542  NSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                +L+ L ++  Q      +    ++ N V+I+TVH +KGLE  VVF           
Sbjct: 722  GIAPTLRWLAAQRTQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGALRE 781

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                 +      +D+ G  +        +       ++  +    E  RL+YV +TRA  
Sbjct: 782  PPSSGLPDAREYHDETGTAVLHYGC--DDEEAEHASRYAVREQAAERARLVYVALTRAVY 839

Query: 661  QLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +  +    + ++ + ++S +     +V  S H  +         +     W A       
Sbjct: 840  RCYLVAGTYQSSRSTRESRRSVLNWLVGGSGHGFDDWLAEPPDEAALSARWQALAGGPIT 899

Query: 719  PENTPLEREE-----------------------------------TIKQLMDEQKIPKKL 743
             +  P                                              DE   P + 
Sbjct: 900  LQPLPKPERRVPLESLQDRSAHMQARANRRPLRDQWRMASFSGLIAAGSKADEAHTPVEE 959

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
              P  ++I +  ++ P+          + +L+  +    G  +H++ ++          +
Sbjct: 960  VRPDHDEIADVLVVTPAPAPHPQAHAEDDILAFPRGAAAGDCLHRMFELADFTEPPTWTD 1019

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSV--- 851
             I     +       +    L   +  LL +           +         +E+     
Sbjct: 1020 AIRGALRERPAPAAPELAARLPAMMHNLLRDVVATELQPGMRLADLDPRRRLNELEFLFA 1079

Query: 852  -------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
                                  +        + G ID I       +I ++K++H     
Sbjct: 1080 APSLDFPALRELLIEHGYPDVALEPGVLRGFVKGFIDMIVEHDGRFWIVDWKSNHLGDTA 1139

Query: 893  IE---------HIPYTHIAQLSIYEKILKD 913
             +            + +  Q  +Y   L  
Sbjct: 1140 ADYAAAPLEAAMASHAYHLQALLYTVALHR 1169


>gi|91213298|ref|YP_543284.1| ATP-dependent DNA helicase Rep [Escherichia coli UTI89]
 gi|117626039|ref|YP_859362.1| ATP-dependent DNA helicase Rep [Escherichia coli APEC O1]
 gi|218560843|ref|YP_002393756.1| ATP-dependent DNA helicase Rep [Escherichia coli S88]
 gi|237702787|ref|ZP_04533268.1| rep helicase [Escherichia sp. 3_2_53FAA]
 gi|91074872|gb|ABE09753.1| rep helicase, a single-stranded DNA dependent ATPase [Escherichia
           coli UTI89]
 gi|115515163|gb|ABJ03238.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli APEC O1]
 gi|218367612|emb|CAR05396.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli S88]
 gi|226902958|gb|EEH89217.1| rep helicase [Escherichia sp. 3_2_53FAA]
 gi|294491804|gb|ADE90560.1| ATP-dependent DNA helicase Rep [Escherichia coli IHE3034]
 gi|307628841|gb|ADN73145.1| ATP-dependent DNA helicase Rep [Escherichia coli UM146]
 gi|315284673|gb|EFU44118.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 110-3]
 gi|323949337|gb|EGB45227.1| ATP-dependent DNA helicase Rep [Escherichia coli H252]
 gi|323954092|gb|EGB49889.1| ATP-dependent DNA helicase Rep [Escherichia coli H263]
          Length = 673

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 100/647 (15%), Positives = 211/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAEAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|15804368|ref|NP_290408.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 EDL933]
 gi|12518638|gb|AAG58972.1|AE005609_4 rep helicase, a single-stranded DNA dependent ATPase [Escherichia
           coli O157:H7 str. EDL933]
          Length = 673

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 IWEQERKVVSAEE 651


>gi|68536698|ref|YP_251403.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
            K411]
 gi|68264297|emb|CAI37785.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
            K411]
          Length = 1205

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 139/1121 (12%), Positives = 296/1121 (26%), Gaps = 225/1121 (20%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +          +       I    +  + T     +     +  +  +   +   S + +
Sbjct: 120  AVATYDSYAGDIVREYGLLIPSEPAARLITDAERWMVARDVVINSGDSLTTQTAVSSVIA 179

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-A 130
                       +++     ++     +KL +   +  + +  F              +  
Sbjct: 180  DVCALSDEMDNHLVGIAAVEQESAAAKKLLEELPKGPRSKKEFTDENTKFRDTQQYRIEL 239

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              L   + E  ++  +L F   +     L++  +V   +     +    +++DE QDT  
Sbjct: 240  LKLVQKFRETLQERDLLTFGQQMSKAATLVRDHEV---VGQDQRRRFRVVMLDEYQDTGH 296

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q  ++RSL  D   G+ + S+     AVGD  QSIY F GA    + + +         
Sbjct: 297  AQRVMLRSLFGDGRAGEGSFSA----MAVGDPMQSIYQFRGATASNLEKFRTDFPN---A 349

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ-GLSEDSTTTIRHRSSRIGQVGTVQ 309
            AG+    ++L  S+R+   +L + ++V +         +    + +R R         V 
Sbjct: 350  AGEPAEKLQLLTSWRNPTMVLDMANRVSTWSMERSTESTGRLVSELRPRPGAAEGESAVA 409

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
             +++   + D   +  Q  W  +   L      +                          
Sbjct: 410  FFDEREQELDWLADKLQSQWRDHQRKLETADDPA-------------------------- 443

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             ++     VLV   KD   I            +         L D   + D+ A+ R ++
Sbjct: 444  KVKPFSAAVLVTVNKDAVPIYEKLVE----RGVPADMTAGPGLLDIPEVADVFAMLRVLV 499

Query: 430  SQEDDLSFVCMLKSPL--------------------FNFSEDD----------------- 452
               DD++ + +L  P                         E D                 
Sbjct: 500  DPTDDVALLRLLTGPRWNLGAADLAVLTRRAEQIAKRGAGEADAIDDSVMERQRREAIEL 559

Query: 453  --------------IFKICTQRHETETVYEYIQKFANCGIS--------KFQHVIKYIHE 490
                          +  I      +  + + +    +            +   + + +  
Sbjct: 560  LRTPGVRDELIEEVLEAIPNATEFSVGLIDALADLTDAEEMGMSAEGSRRLAQLGRELGY 619

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRNEQNSYS 545
            L   +   +  D    I      R + ++R+            LD+F        +   +
Sbjct: 620  LRRHSLGKNLPDLVADIEKMLGVRTEVLTRWHRRPEQAIGTSHLDKFAQIVRDVSRAGSA 679

Query: 546  SLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            + + L+  L                   N V+I+TVH AKGLE  +V +     + +   
Sbjct: 680  TPKALVEYLLAAQSEEDGLDPGEVQRKDNTVQILTVHKAKGLEWDIVAVPHASRERYGDY 739

Query: 602  HIKKMHIMP-------------SLNDDPGIP-----IWIPQSKSRNNIVSDLIKHLKKST 643
               +                     D PG                     +  K + +  
Sbjct: 740  SQPRSESAWTIKARVLPSSLRGDAGDGPGAYPTLVTDDAEDRSGHTKAYKEFNKQVSRFR 799

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             +E +RL YV +TR+   L +   +   +  K N  +    +   +     V       S
Sbjct: 800  AKENDRLFYVAITRSERVLFVSGSAFKESASKGNDPSICLTLLHEYLEQSGVAANVEHWS 859

Query: 704  INKDEWIAYEWSTHHP----------------------ENTPLEREETIKQLMDEQKIPK 741
                 +   +    +P                      E    ER+              
Sbjct: 860  GMGMYYKDLDTRLDNPDLPLEDKLMLPTPQINGERGDYEEERKERDTVATAGASWPSPAP 919

Query: 742  KLFSP-----IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI----IHKLLQV 792
             +  P      +    E   ++                +D              + LL+ 
Sbjct: 920  AMTRPGVAEGAEQVRKEIEAVSQQEEQDGQSRPAPGATADGAPTTLAEAWDLETNLLLEE 979

Query: 793  IFTLPEHK-----------------------------------------RKNFITSYCTK 811
               +   +                                         R     ++  +
Sbjct: 980  FSAMDNAELVVPLNVRMTATEAVSLRKDNQEFALRARRPIPLEPKPYAKRGTAFHNWVEE 1039

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS------VSGKINCPKKDIIIS 865
              K     +   L  +    LE+P + T       SE +      V G  +      +  
Sbjct: 1040 RYKQVSLLDEDQLPGASDATLEDPYLETLKDAFLRSEWADRQPESVEGAYSVTIGGHVFE 1099

Query: 866  GRIDQISISQQ----NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY------ 915
            GRID +            + ++KT                 QL++Y              
Sbjct: 1100 GRIDAVFHDGTDPTAGWIVVDWKTGRKPTGADMDAA---AMQLAVYRLAWAKLLSAKLGV 1156

Query: 916  --PNKSLVCLLIYVSEPKVFI----IPQNKLNKAFAEISTK 950
              P +++     YV+  + +     +  ++L      ++ K
Sbjct: 1157 EVPAENVRAAFHYVAANETYEPRTLLSADELEGMLGGVTKK 1197


>gi|159900168|ref|YP_001546415.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893207|gb|ABX06287.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 641

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 103/574 (17%), Positives = 189/574 (32%), Gaps = 112/574 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+   +++  +DF+D+I+ T  LL +      +  ++     H+L+DE QDT 
Sbjct: 168 AAAIYRTYQRQLERSNAVDFDDMIVMTYKLLFEHHD---VLDEVQSRWAHVLVDEYQDTD 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++  L+            PR+LFAVGD +QSIY F  A+   + R  R   +   
Sbjct: 225 SAQYALLELLSR------PVAQRPRSLFAVGDAQQSIYGFRNADYTIINRFTRDFPE--- 275

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++EL  ++RS  +IL     V         L+  +        +         
Sbjct: 276 -----AQVVELLTNYRSRQEILDAAYAVMRHSVAVPALTLKAARRSPPVPA--------- 321

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                     + + +     A  IA +I N++ T          
Sbjct: 322 ------------------------LVINEATDDRAEADAIAKSIGNLLSTGR-------- 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             ++KDI +L R R  +  +    R      +I      +    D   I+D +A  R I 
Sbjct: 350 --RSKDIAILYRSRHMSRGLETALR----QARIPYSLKGQAGFYDRRVIRDALAFLRIIA 403

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISKFQ 482
           +  D LS   ++  P        I  + ++         E     E  +  ++       
Sbjct: 404 NPSDSLSMNRIINVPARGIGASTIAHLTSKAAALELPLGEALLKREAWEGLSDRASQMVS 463

Query: 483 HVIKYIHELIHIAQFCSPHD-FFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNE 540
              + ++    +A    P +     +L     +          E  D L        R  
Sbjct: 464 DWARKVYRWRKLASGSYPPEGLLQTVLQESGYQSMIEKDWNDPERSDALAHLEEL--RVA 521

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              ++SL   + E+               + V+++T+H AKGLE P+V++         H
Sbjct: 522 AGEHTSLAAFLQEIALL---TNVEDKDERDAVQLLTIHGAKGLEWPIVYVAGLEEGTLPH 578

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                      +    EE  RL YV +TRA +
Sbjct: 579 ERSLV----------------------------------EAGGVEEERRLCYVALTRAGE 604

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
           QL +         +++  R   D++       + 
Sbjct: 605 QLYLSHAKKRQRNQRNPSRFLDDILVYGRERAKA 638


>gi|260846446|ref|YP_003224224.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O103:H2 str. 12009]
 gi|257761593|dbj|BAI33090.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O103:H2 str. 12009]
          Length = 673

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 222/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +             ++I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LTVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 IWEQERKVVSAEE 651


>gi|215489106|ref|YP_002331537.1| ATP-dependent DNA helicase Rep [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312969493|ref|ZP_07783695.1| ATP-dependent DNA helicase Rep [Escherichia coli 2362-75]
 gi|215267178|emb|CAS11626.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312286040|gb|EFR13958.1| ATP-dependent DNA helicase Rep [Escherichia coli 2362-75]
          Length = 673

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 222/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  + + +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDSIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 IWEQERKVVSAEE 651


>gi|228469677|ref|ZP_04054645.1| putative ATP-dependent helicase [Porphyromonas uenonis 60-3]
 gi|228308696|gb|EEK17422.1| putative ATP-dependent helicase [Porphyromonas uenonis 60-3]
          Length = 1102

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 145/947 (15%), Positives = 299/947 (31%), Gaps = 102/947 (10%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             +     + P   F      +   L+  T            +        ++     +  
Sbjct: 230  VDAFRAQVIPGTKFPGG---QQSPLARLTDTTKDQPTIGATKSYITATTWDKYLRHFNV- 285

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
                         T+            L  +  + + +  +  T +        L L   
Sbjct: 286  -----EEALDERYTKGFE------GSPLLSAFYKILPLHTKLFTLQTAIRKGYDLQLLGE 334

Query: 133  LNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            + ++  +  ++    +LD    +I T  L+ +   +A+I  +I  ++ H +IDE QDTS 
Sbjct: 335  IQSNVSKVSEELNITLLDNAKQLIRT--LVGREHSTAFIYERIGTKLKHHMIDEFQDTSR 392

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q+E  + L  +      +       F VGD KQSIY F  ++P   +  +    K  +N
Sbjct: 393  FQYENFKPLLNEALAADGSS------FIVGDVKQSIYRFRNSDP---MLLQESLSKDFSN 443

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                     L  ++RS   I++  ++ FS+   A  L  D ++                L
Sbjct: 444  YE---KTHNLEFNWRSAPAIVSFNNRFFSLLPGASQLKLDKSSESYK------------L 488

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
             E + +  +       +           +   +    ++   I  ++  + +  + ++R 
Sbjct: 489  IENIYAASEVHQEVPDKHLNKVGGVFIHQWQEASPQDQLQAKIDYLL--EHVIPSLRERG 546

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
             +  DI +L  K      I         ++                       +     +
Sbjct: 547  YKLSDIAILTPKNDTLQRIAQSIIQYNQEH----------KSEQEPLAFVSREMLSLDAN 596

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                L  V ++ S L N    +     +  H   T +  +   +   +         +  
Sbjct: 597  PLYRL-IVEIMHSVLVNAGAAEELYSKSFEHRLATAHYAVLARSIHDLPAL-----DLTR 650

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                 Q  S ++   LI+      +       +     +D  L+      Q++Y  LQ  
Sbjct: 651  CYSEGQGASLYELTLLIV------KAVSPLITSADQPYIDALLDTVQDYSQDNYVDLQGF 704

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH-------- 602
            +  LE + P +        + ++++T+H+AKGL  PVV L++   ++  H          
Sbjct: 705  LEWLETHTPRLCL---ETQDALQLLTIHSAKGLGFPVVCLLEYQWRLLDHNDIIWCDDKE 761

Query: 603  --IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               +   ++ +  + P +       ++ +      I   + +   +    LYV MTRA  
Sbjct: 762  VMDELRELLGTDVEIPPLLPISSTKETLSTSFRHRIAAEEGAALLDRINTLYVAMTRAKS 821

Query: 661  QLIIC-KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            ++ +       ++ K  N  +    +    H          +  I      A   S    
Sbjct: 822  EMHLILSEKKETSGKSVNFESVISELVKEIHKTASSADFCGSKEIPLHCSKATTSSAKVG 881

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL-SDNQ 778
            E                Q  P    S              S +        +S+   +  
Sbjct: 882  EVLQCTFYTQTDPSTAPQTQPTAESSTASAPRRISGREQTSDLAQLRVRRFQSVSYQEQD 941

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               RGL +H LL  I  L   + ++ + + C +   L P ++   L   +   L +P + 
Sbjct: 942  AVRRGLFLHALLSEIDYLEHDELQDILQAKCHQ--GLLPKEQLAPLTKQLEGALADPAIA 999

Query: 839  TAMSCDS-------YSEVSVSGKINCPKKDIIISGRIDQISISQQ--NIFIFEYKTHHHV 889
                  S        S V  +   +   +   I  R D+I   ++     I +YK+    
Sbjct: 1000 EYYQPSSKWQVVNERSVVRFTQDTSSETRTARIE-RPDRIMYDEEAQQAVIIDYKSG--- 1055

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNK-SLVCLLIYV-SEPKVFI 934
              E +H    H  QL  Y K L        ++   L+Y+  +  + +
Sbjct: 1056 -DEAQHQTARHKRQLRNYRKAL--LASGFTTVRAYLLYLSDDGHLVV 1099


>gi|94986496|ref|YP_594429.1| ATP-dependent exoDNAse beta subunit [Lawsonia intracellularis
            PHE/MN1-00]
 gi|94730745|emb|CAJ54107.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Lawsonia
            intracellularis PHE/MN1-00]
          Length = 1069

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 154/880 (17%), Positives = 282/880 (32%), Gaps = 107/880 (12%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +K      I+    N  S          Q     +       K  + T+  + LAK L  
Sbjct: 276  RKPNLTDCILKSSKNTPSHHTISLYNTLQSLITYLDTTGVLLKNSQKTIPYVKLAKELYN 335

Query: 136  HY-EEAKKKNCVLDFEDLI-INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
               E   K+  +L   +LI       +      + I  K+   + HILIDE QDTS  QW
Sbjct: 336  LLPEFFCKQRIIL--AELIPSLAQQAVSGHYGISEIFCKLGTNLQHILIDEFQDTSHEQW 393

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             VI+    +            +L  VGD KQ+IY + G +     +          +   
Sbjct: 394  AVIQPFVVEALSYGG------SLTWVGDVKQAIYGWRGGDTTLFEKVLSD--PELQSIAS 445

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENA-------QGLSEDSTTTIRHRSSRIGQVG 306
                  LP+++RS   I+   + +F+   +          +  +        +    QV 
Sbjct: 446  YVQKESLPINWRSAYHIVNTNNTLFTKLSDHNIVQSIFSKILPNEIAPTIKNTILSEQVP 505

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             V        Q  +    +   +     +  +    +++  R+   I ++    ++    
Sbjct: 506  LVTQSFADAEQSIAPNKKEGYVYIQRILNDEESDPDTVVHDRLINIIHDIQTRRSL---- 561

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    DI +LVR  K    +            I VV  + F+L +H  I   +A+  
Sbjct: 562  -------GDIAILVRSNKRAMQVANWLME----KNIPVVTENSFLLIEHPIILQFIAILE 610

Query: 427  FILSQEDDLSFVCMLKS-----PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            F+ S ++DL+F  ++       PL N  +  + +    R+ ++ +Y   +         +
Sbjct: 611  FLDSPQNDLAFWRIINGGNLVQPLLNIPQQKLDEWICIRNRSQPLYLAFKADFPDAWEHW 670

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                  I      +   S +D     +   K +++F           +  FL        
Sbjct: 671  ------ILPFYDDSGLLSAYDAIQESIDRLKIKKRFPKEMSF-----IRRFLEIIYIAST 719

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              Y S+   +   +Q+    K     N   VRIMT+H +KGL+ P+V +      +  + 
Sbjct: 720  KGYDSISNFLEYWKQHGHKEKTPMPENIAAVRIMTIHKSKGLQFPIVIIPWHDFPLKPND 779

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             + +  +      D    I            S L+         E   LLYV  TRA ++
Sbjct: 780  SLIQTCV------DGFNIIVKQSPAMPKEYYSSLL-----KNVCESLNLLYVAWTRAEEE 828

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            L     S  S +K S       ++     ++   +  + T         A   S  +   
Sbjct: 829  LYALITSTKS-KKISFAEAINPILDYLSWDNNIYQLGEKTY---TSNHTAMLSSNKNSTE 884

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
             P    ET  +     +    L                                   +  
Sbjct: 885  IPYIYLETKDESTSSWRPMHWLPQ-------------------LRIFRNPVNELGITSKR 925

Query: 782  RGLIIHKLLQVI--FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN----P 835
            RG  IH  LQ +     P       I     +     P+ +Y  ++  +  +L+     P
Sbjct: 926  RGTFIHHCLQYLCISKNPNIDISLAIDYAIKRFPLPLPSSQYNIIVKDVLSILQWYTSLP 985

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
                 +     +E      +     +I    R+D +  + +   + EYKT          
Sbjct: 986  KTRYWIQFG-LAEQ----TLLDKNNNIY---RVDLLVNNGKEYSVIEYKTG--------E 1029

Query: 896  IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                HI QL  Y  I+K+   +  +   +IY+   ++  I
Sbjct: 1030 TSLQHIQQLQKYLDIIKE-TTSLPVKGYIIYLDLKRIHTI 1068


>gi|170769825|ref|ZP_02904278.1| ATP-dependent DNA helicase Rep [Escherichia albertii TW07627]
 gi|170121263|gb|EDS90194.1| ATP-dependent DNA helicase Rep [Escherichia albertii TW07627]
          Length = 673

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGAELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSLF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 IWEQERKVISAEE 651


>gi|146280892|ref|YP_001171045.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri A1501]
 gi|145569097|gb|ABP78203.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri A1501]
          Length = 658

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 94/645 (14%), Positives = 206/645 (31%), Gaps = 125/645 (19%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
             +  + ++K  +   +++ I   +     +  K        A  +  HY+   K    +
Sbjct: 116 AGDDGADEIKNLIDSWKNDLILPDEALAKARGPKE-----QTAAIVYLHYQRTLKAYNAV 170

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF DLI+    L ++      I  K    I ++L+DE QDT+  Q+ +++ L        
Sbjct: 171 DFNDLILLPVKLFQEHPD---ILEKWQNRIRYLLVDEYQDTNASQYLLVKMLVGM----- 222

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST
Sbjct: 223 -----RNQFTVVGDDDQSIYAWRGARPENLMLLKEDYP--------SLKVVMLEQNYRST 269

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           + IL   + + +   +                         QLW ++    +        
Sbjct: 270 SRILKCANILIANNPHVFEK---------------------QLWSEMGHGDEI------- 301

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   + +  +      R+A  I              +R     D  +L R      
Sbjct: 302 -------RVIRTRNEEAECERVALEI-------LTEHLRTQRP--YSDFAILYRGNYQAK 345

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           L+    +     ++I    +          +KDLM+  R +++ +DD +F+ ++  P   
Sbjct: 346 LMELKLQ----HHQIPYRLSGGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVINVPRRE 401

Query: 448 FSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSP 500
                + K+         ++Y    +        +    +      ++  +        P
Sbjct: 402 IGSTTLEKLGNYASERGISMYAAADEIGLGAHLDSRYAERLARFKHWMDNVRQQCAQNDP 461

Query: 501 HDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELIS 552
                 ++              ++      +  +   ++     L  +++   ++++ I 
Sbjct: 462 IAAIRSMVMDIDYENWLRQNASSDKVADARMGNVWFLVDALKNTLEKDEDGDMTIEDAIG 521

Query: 553 ELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           +L        ++        V++MT+H +KGLE P V+++    ++  H           
Sbjct: 522 KLVLRDMLERQQEEEEGAEGVQMMTMHASKGLEFPSVYIIGFEEEILPH----------- 570

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                      ++  T EE  RL YVG+TRA   L +   +   
Sbjct: 571 ------------------------RSSIEADTIEEERRLAYVGITRAKRNLALTFAAKRK 606

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
              +    T    + +    D   + ++      K        + 
Sbjct: 607 QYGEVIDCTPSRFLDELPPEDLVWEGMEEAPVEVKAARGNDALAA 651


>gi|218692056|ref|YP_002400268.1| ATP-dependent DNA helicase Rep [Escherichia coli ED1a]
 gi|218429620|emb|CAR10442.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli ED1a]
          Length = 673

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 100/674 (14%), Positives = 219/674 (32%), Gaps = 135/674 (20%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-- 519
                       +  G         ++ E+  +A+          ++             
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLVEIQRLAEREPIAA-VRDLIHGMDYESWLYETS 492

Query: 520 ---RFGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
              +     +  +++  ++        E +   +L ++++         +       ++V
Sbjct: 493 PSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQV 552

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V++V        H+                               
Sbjct: 553 QLMTLHASKGLEFPYVYMVGMEEGFLPHQSSID--------------------------- 585

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +   +E  RL YVG+TRA  +L            +  +      + +   +D
Sbjct: 586 --------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDD 637

Query: 693 ERVKKIKLTNSINK 706
              ++ +   S  +
Sbjct: 638 LIWEQERKVVSAEE 651


>gi|50123135|ref|YP_052302.1| ATP-dependent DNA helicase Rep [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613661|emb|CAG77112.1| ATP-dependent DNA helicase [Pectobacterium atrosepticum SCRI1043]
          Length = 673

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 100/639 (15%), Positives = 213/639 (33%), Gaps = 123/639 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  Q +      L++ +    +    + D        +S      L  +  +
Sbjct: 112 DQMALLKELTEQWLENDKVLLQQLISTISNWKNDLIDPAGAAATARSERD--KLFVHCYS 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y E  +   VLDF+DLI+    LLK+      +R +    + ++L+DE QDT+  Q+E+
Sbjct: 170 LYHEHLRACNVLDFDDLILLPTLLLKRN---TEVRERWQNRLRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L                   VGD+ QSIYS+ GA P+ ++  ++             
Sbjct: 227 VKLLVG----------PRARFTVVGDDDQSIYSWRGARPQNLVLLQQDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S              G     + + 
Sbjct: 269 DVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSEL------------GYGDELKVIT 316

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           + ++                          A R+            + ++   +  Q  D
Sbjct: 317 ANNED-----------------------HEAERVV---------GELIAHHFIKKTQYGD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L   +        +I    +          IKDL+A  R + + +DD 
Sbjct: 345 YAILYRGNHQSRLFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPDDDS 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        + ++                    Q   +++
Sbjct: 401 AFLRIVNTPKREIGPATMKKLGEWAGQRNKGLFSASFDLGLSQSLTGRGLESLQRFTQWM 460

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----E 540
            E+  +A+        D    +       +   S    E  +  +++  ++        +
Sbjct: 461 EEIARLAEREPVAAVRDLIHGLDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSD 520

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +     + ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 521 LDEPMTLTQVVTRFTLRDMMERGESEEDQDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       +   +E  RL YVG+TRA  
Sbjct: 581 QSSID-----------------------------------EDNVDEERRLAYVGITRAQR 605

Query: 661 QLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           +L   +CK      E    + + + +           ++
Sbjct: 606 ELFFTLCKERRQYGELIRPEPSRFLLELPQDDVVWETER 644


>gi|220916545|ref|YP_002491849.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954399|gb|ACL64783.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1195

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 124/964 (12%), Positives = 261/964 (27%), Gaps = 90/964 (9%)

Query: 40   ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
            E          + + +A +     +    L +  L +     + +  + + K       +
Sbjct: 229  EASTAGARALVEAVGRAREALRPGDLDGALCADALARLGGLAEALRGRRVLKADGPALRE 288

Query: 100  LKKSQDEFIKIRDRFNT-YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
             +++     +  +                 L +   A Y   K     +DF+D       
Sbjct: 289  AREALAAAWEALEPLAAGVLAAPQQAELARLVEDAEARYAARKASARAVDFDD---LLLR 345

Query: 159  LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
                      +R ++   +  +L+DE QD + +Q EV      +   G +   +   L A
Sbjct: 346  ARDLLRADPGVRAELRGRLRALLVDEYQDVNPVQQEVF-----ELVAGPDGGPAGPVLVA 400

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            VGD KQSIY F GA+     R  R           +  ++ L  + RS   +L +V++V 
Sbjct: 401  VGDLKQSIYRFRGADVAVFARLIRRLGA------GQGRVLHLSENHRSAPAVLELVNEVS 454

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
            +               +             +         +                   
Sbjct: 455  ARAFRPPPGEPPRDDELAFGEHDRLVATRPEALRPACEVLEDGAEGNAAERREREAEAIA 514

Query: 339  ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                ++++      +               R  +  D+ +L R+           R    
Sbjct: 515  ARIRALVSGAAGVEVRE-------RDGVTARRPRFGDVAILFRRLTQIAPYERALRA--- 564

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
               I               ++DL  L   +    D +++  +L+SP    S+  +  +  
Sbjct: 565  -AGIPYRLARGGGFYQAPEVRDLGELLAALADPSDAVAWAALLRSPACAVSDGSLLLLAR 623

Query: 459  QRHETETVYE----------------------------------YIQKFANCGISKFQHV 484
                                                          +       ++   +
Sbjct: 624  AGLGRLPWLAPAELAAEVDRAAAGAQPGAGVVAAGPGAGPPAAVAPRAIPADEWARLLRL 683

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRN--EQ 541
            +     L  +       +  +  + A       ++    E     L++ L    R   + 
Sbjct: 684  LAAYRTLHALRDRVPVGELLSRAVEALDLDAALLAGPDGERRAVNLEKALALAARFGEDG 743

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
             + + L   +      PP    A     + V +++VH AKGLE PV F+ D G++  +  
Sbjct: 744  GTPAELAAHLRAQAARPPREPEAELEAADAVSLLSVHQAKGLEWPVAFVPDLGARARADL 803

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                +     L     +     ++      ++      ++S   E  RLLYV +TRA D 
Sbjct: 804  RRALLDREGRLCVA--LFDPAREAFVETAALARARDDDRRSAAAESRRLLYVALTRARDL 861

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            L++         + S   TW  +V         + +             A         +
Sbjct: 862  LVLSG-------EGSGAETWRGLVEAGLAERPDLARRIPVAEDAAAAAHAPPAPAPAAAS 914

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI----DTKGKTNLESLLSDN 777
            T                  +   + +      P       +    + +G   +       
Sbjct: 915  TTEPLAPPPLAPPAPPAATRAAVTELAEYARCPRRHLLGRVLGIPEPRGAPGVPPGDDPG 974

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA-KEYKNLLLSITRLLENPM 836
            +   RG + H +L           +    +         PA    + +LL + R  E P 
Sbjct: 975  RATARGTLAHAMLAETDLGAPPLERRAQLAAAAARRGYDPASPGVRRILLEVARFAEAPG 1034

Query: 837  MTTAMSC----DSYSEVSVSGKINCPKK--DIIISGRIDQISIS--QQNIFIFEYKTHHH 888
                           EV    ++        + + G +D +        + + +YK    
Sbjct: 1035 GRELALAAREGRLLREVPFLLRLGPGDGAPAVYLVGALDALVQERRGGGLTVVDYKYATP 1094

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
                       +  QL  Y      ++P   +   L ++       +      +      
Sbjct: 1095 RAG----AAERYRLQLLAYVLAAARAHPGARVRARLQFLRGDH-RAVDVTPSARELERFE 1149

Query: 949  TKIP 952
               P
Sbjct: 1150 QDAP 1153


>gi|323527814|ref|YP_004229967.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
 gi|323384816|gb|ADX56907.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
          Length = 699

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 99/617 (16%), Positives = 191/617 (30%), Gaps = 133/617 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  K +    +R +   ++ ++LIDE QDT+
Sbjct: 175 AAIVYRNYVATLHAYQAVDFDDLIRLPAELFAKNE---QVRDRWQNKLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKQLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S                  
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWS------------------ 315

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                            E       ++   +     A  + +          + ++  +R
Sbjct: 316 -----------------EHGMGDSITVTACNDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +D  +L R      +   + R      +I  V +      D   IKD+ A  R I 
Sbjct: 350 RANFRDYAILYRGNFQARIFEQVLR----RERIPYVLSGGQSFFDKAEIKDICAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           +  DD +F+  + +P        +  + +   +   +++E +       + +   I   +
Sbjct: 406 NANDDPAFIRAITTPRRGVGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSPRQIEPMR 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLN---- 534
               ++  L   A+  +       ++ A          F           + EF+     
Sbjct: 466 AFCDFMQRLTDRAEKDAAGTLLDELMDAIHYEAYLYDAFDERQAQAKWQNVLEFVEWLKR 525

Query: 535 -----------FTLRNEQNSYSSLQELISE-------LEQYPPTIKRAH-SANHNEVRIM 575
                           E   Y +   L          ++             + + VR+ 
Sbjct: 526 KGTKAEPDDAALAASGEATGYDTADGLADTGKNLLGLIQTVALMSMLEGREEDPDAVRLS 585

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH +KGLE P VFLV     +  H+   +   +                          
Sbjct: 586 TVHASKGLEYPHVFLVGVEEGIMPHRGGAEDEPIDD------------------------ 621

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                 +  EE  RL+YV +TRA   L +         +++        + +   +D   
Sbjct: 622 ------ARIEEERRLMYVAITRAQRSLHLNWCKKRKRARETVVCEPSRFIPEMLLDDAPP 675

Query: 696 KKIKLTNSINKDEWIAY 712
                     KD   + 
Sbjct: 676 PTADEAPMSPKDRLASL 692


>gi|257790705|ref|YP_003181311.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
 gi|257474602|gb|ACV54922.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
          Length = 813

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 101/741 (13%), Positives = 201/741 (27%), Gaps = 183/741 (24%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+    +    V+                + ++   L            
Sbjct: 28  GAGSGKTRVLTYRIANLIENHDVAPWEILAITFTNKAAAEMRERLNGLVGPRCRGMWVST 87

Query: 66  FSLL---------SSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKI 110
           F  +              T+ FT       + + K+     +       +    +     
Sbjct: 88  FHSMCVRMLRSDAEKLGFTRNFTIYDTDDQKRLYKEIMAELDIDPKRFPVNALMNRISTA 147

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++       F+         +A  + +  +E  K     DF+DL++    LLK  +    
Sbjct: 148 KNELVVPSAFEKEAGDPVGKVASRVYSRLQERLKAANAFDFDDLLLYAYLLLKNHED--- 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R    Q   +I++DE QDT+  Q+ +   L E            + +  VGD+ QSIYS
Sbjct: 205 VRSAYQQRFRYIMVDEYQDTNHAQYSITGLLAE----------GHKNIMVVGDDDQSIYS 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++               ++L  ++RS  ++L   + V +  ++ +   
Sbjct: 255 WRGADLRNILEFEQDYPT--------AHTVKLEQNYRSVGNVLAAANAVIANNQHRKAKK 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                          S  +  +       D   +        R 
Sbjct: 307 LF----------------------------TSAEDGDKIQVYMAADERDEG-------RW 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I                 +    + V  R    + ++  +         +      
Sbjct: 332 IAGEIEKQRAAG----------LSYNQVAVFYRTNAQSRMLEDML----LRAGVPYRIVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   I+D+MA    +++  DD++   ++  P     +  I +I     E    + 
Sbjct: 378 GTRFFDRAEIRDVMAYLTLVVNPADDIAAKRVINVPRRGIGKTTIERIEQFAREMGMTFM 437

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGN 523
              + A           + I E + +                 I+          +   +
Sbjct: 438 EGAELAIVDPELRASARQAIGEFVGLVNEARTYGGDLRKVIETIIDKSGLIGALQAENTD 497

Query: 524 EVI---DVLDEFLNFTLRNEQNSYS------------------------------SLQEL 550
           E     + + EFL       +                                  S    
Sbjct: 498 EARGRIENIQEFLGVVDEFTETHEDEDALYEAPTAEPADAPALAPVPSSADALAGSFYAF 557

Query: 551 --ISELEQYPPTIKRA----------------------HSANHNEVRIMTVHTAKGLESP 586
              +EL                                 + + + V +MTVH++KGLE  
Sbjct: 558 AGANELAAPAEESPVRVLRGDSLADFIEWVRLRTDLDTVAEDGHAVTMMTVHSSKGLEFD 617

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+      +F H +                                       +  EE
Sbjct: 618 CVFVAGMEETLFPHMNSVG----------------------------------DAAGIEE 643

Query: 647 YNRLLYVGMTRASDQLIICKH 667
             RL YV +TRA  +L +   
Sbjct: 644 ERRLAYVAITRARKKLFLTCA 664


>gi|170782260|ref|YP_001710593.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            sepedonicus]
 gi|169156829|emb|CAQ01996.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            sepedonicus]
          Length = 1086

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 113/899 (12%), Positives = 243/899 (27%), Gaps = 152/899 (16%)

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                  S  A   L   L   ++E K +  ++++ D +     + ++      +  +  +
Sbjct: 222  AADAVASVGALPPLV-DLAVRFQEEKTRRGLVEYSDQVAFALAICER---VPQVVAEHRK 277

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                +L+DE QDTS++Q  ++ +L                + AVGD  QSIY + GA   
Sbjct: 278  RFRVVLLDEYQDTSVVQTRLLSTLFG-----------GTPVMAVGDPHQSIYGWRGASAA 326

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
             + R        A  +     +  L  S+R+ A +L   +++                  
Sbjct: 327  NLARFGADF-APAGASAADVPVYALSTSWRNPASVLGAANRI------------------ 367

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                        V+          ++  P+ ++   + D   +E+ A   A  +A   ++
Sbjct: 368  ------------VEPLTAASRIPVARLEPRPDAGDGHLDVAYEETIAD-EAASVAAWFAD 414

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            ++              + +   +L R  K     T        D  +         L D 
Sbjct: 415  LLRQTGSDG-------RPRSAAMLCRSLKTIEPFTTAL----ADRGVPFRVLGLGGLLDQ 463

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
             A+ DL+ + R +         V +L    +     D+  +        +     +  A 
Sbjct: 464  PAVVDLVCVLRVLHDPTAGSELVRLLTGARWRIGTKDVHALSRVASWLMSRDHAQKPLAE 523

Query: 476  CGIS----------------------------------------KFQHVIKYIHELIHIA 495
                                                        + +   + +  L    
Sbjct: 524  EVRDGLRASVVPDEVGSVVDALDFVVGARDGHTALAGFSDEGLARLRAAGRQLQVLRSRV 583

Query: 496  QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSS-LQELISE 553
                  D  T++        +  +          L+ F        Q   +  L   ++ 
Sbjct: 584  G-LDLVDLVTVVQQELLLDIEVAANETDPLGRASLEAFTEQVAGYLQGDSAGTLGPFLAW 642

Query: 554  L---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK----- 605
            L   E+      R        V+I+T+H +KGLE  VV +             +K     
Sbjct: 643  LAEAERRDNLAPRTEEPEPGTVQILTIHGSKGLEWDVVAVPRMVEGELPGTLREKKGWVA 702

Query: 606  --MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI----KHLKKSTQEEYNRLLYVGMTRAS 659
                      D   +P    +        ++ +    + L++    E  RL YV +TR  
Sbjct: 703  FGALPFEFRGDSAELPSLAWRGVETQKEFAEAMEAFGEELEERNAAEQRRLAYVAITRTR 762

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
              L++     ++ +K      +   +                   N  E  +   +   P
Sbjct: 763  SDLLLSGSFWSTQQKPRGPGAFLREIQQVGLIAPDALPEAPELEENPLEPGSARVAWPLP 822

Query: 720  ENTPLEREETIKQLMDEQKIPKK----------------LFSPIKNDINEPYILNPST-- 761
               P E              P                    +     ++ P  +  S   
Sbjct: 823  PLGPREARVRAAAGAVAGADPDAETVWTRDIDLLLAERDARARDAELVDLPTRIPASRFK 882

Query: 762  ------IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKNAK 814
                       +          +    G + H  ++           + I +     +A 
Sbjct: 883  DFVSDPAGVAARLRRPMPERPYRQTRLGTLFHGWVE--ARYGPAGTSDVIDASGVELDAD 940

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS 874
                   +  L  +  + E           S     V  +I+      ++  +ID + + 
Sbjct: 941  PTEPPVEQEDLDRLRAIFEASEWA------SRKPEEVEVEIHMELAGQVVICKIDAVFLI 994

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPK 931
                 + ++KT        +        QL++Y              +     +V++ +
Sbjct: 995  DGRYRVVDWKTGRTPKDAAD--LELKQLQLALYRLAFAKWRGIDPDLIDAEFYFVADDR 1051


>gi|3318688|pdb|1UAA|A Chain A, E. Coli Rep HelicaseDNA COMPLEX
 gi|3318689|pdb|1UAA|B Chain B, E. Coli Rep HelicaseDNA COMPLEX
 gi|148182|gb|AAA67579.1| rep helicase [Escherichia coli str. K-12 substr. MG1655]
          Length = 673

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 209/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL+  +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQANEE---VRKRWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|330941258|gb|EGH44122.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. pisi
            str. 1704B]
          Length = 1230

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 129/1001 (12%), Positives = 278/1001 (27%), Gaps = 150/1001 (14%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            +   +            +  L   FT        E  K  P +    +        +   
Sbjct: 268  KPWFEKLAAWAADDTQEALDLGTGFTRLTPEGIAEAWKSEPPVHPAFEAMAQMKAALDGL 327

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                            A++++A +EE K++   + F+D+++  +  L        +   I
Sbjct: 328  PK-----PDAAVLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HGAGGERLATLI 381

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F GA+
Sbjct: 382  REQFPVALIDEFQDTDPVQYRIFDSIYR-----LEANDEQTGLFLIGDPKQAIYAFRGAD 436

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                LR ++                 L  ++RS+  ++  V+ VF+  E  +        
Sbjct: 437  IYTYLRARQA---------TDGRWHTLDTNYRSSHTMVESVNHVFTRAEQREQGRGAFLF 487

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H +         Q  ++ +    +               +        LA   A  I
Sbjct: 488  RDEHGNQVPFSDALAQGRKETLHVDGAPLTALTVWHLQSDQPVSGVVYRQQLAASCASEI 547

Query: 354  SNMIGTDTIFSNGKK------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
              ++      S G        R ++  DI +LVR  K+   +             SV  +
Sbjct: 548  VRLLNAGQQGSAGFVTPDNTLRGLRPADIAILVRDGKEAQAVRQQLTA---RGVRSVYLS 604

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            D+  +       DL++  +     + + +          +    ++ ++           
Sbjct: 605  DKDSVFAAQEAHDLLSWLKACAEPDSERTLRAARACITLDLPLAELERLNQD-------- 656

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
            E   +        ++ + +    L  + +          ++    G +   +        
Sbjct: 657  ELAWERRVMQFRGYRAIWRSQGVLPMLRRLLHDFALPQTLMTRNDGERVLTNLL------ 710

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             L E L           + ++ L   L               ++   V+++T+H +KGL+
Sbjct: 711  HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQ 770

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             P+VFL    S          +    +            +S+        LI+       
Sbjct: 771  YPLVFLPFICSSKPVDGSRLPLQFHDADG----------KSQISLQPTEALIQKADDERL 820

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             E  RLLYV +TR+     +   ++      +        +           +    N  
Sbjct: 821  AEDLRLLYVALTRSEHACWL-GVADLKRGNANTSMLHRSALGYLLGGGAVPAESAELNVW 879

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN------ 749
             +D     E     P   P +   +  +             +       +          
Sbjct: 880  LRDLAQGCEAIALQPVPEPTDERFSAPRNEAALVKLLVPKRRAAENWWIASYSALRIGDT 939

Query: 750  --DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV--- 792
                 +    +P          L+                  +  N G  +H LL+    
Sbjct: 940  VTAGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGAFLHGLLEWAGN 999

Query: 793  ----IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMTTAM 841
                +      K ++ +   C +           + L  +  + L          +    
Sbjct: 1000 EGFAMTAHAPEKLQDAVARRCNRRGWAGWINTLSDWLQHMLNMPLRLSPDAAPVALGELD 1059

Query: 842  SCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQISISQ 875
              + Y  E+     S  +N  + D ++                       G ID     +
Sbjct: 1060 QPNQYRVEMEFWFASNNVNVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHE 1119

Query: 876  QNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS---------YPN 917
               ++ +YK++     +  +         +   +  Q  +Y   L            Y  
Sbjct: 1120 GRYYVADYKSNWLGSDDSAYTQLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQ 1179

Query: 918  KSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
                 L +++           F  P  +L ++   +    P
Sbjct: 1180 HMGGALYLFLRGSRSASQGAYFTRPPRELIESLDLLFQGKP 1220


>gi|311281536|ref|YP_003943767.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae SCF1]
 gi|308750731|gb|ADO50483.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae SCF1]
          Length = 673

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 103/668 (15%), Positives = 215/668 (32%), Gaps = 121/668 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I+     L++ +    +    ++                 +  +  
Sbjct: 111 TDQTALLKELTEGLIDDDKVVLQQLISTISNWKNDLKTPAQAAAGALGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKQLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                V+L    
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKKLFS-----------ELGYGVEL---- 312

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                +   +     A R+A           + ++      Q K
Sbjct: 313 --------------------KVLSANHEEHEAERVA---------GELIAHHFINKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +       L    +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEK----LLMQNRIPYRISGGTSFFSRPEIKDLLAYLRILTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        ++++         Q     G        ++
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWATTRNKSLFSASFDMGLNQTLTGRGYESLTRFTQW 459

Query: 488 IHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +++        D    I       +   S    E  +  ++    +        
Sbjct: 460 LGEVQRLSEREPIAAVRDLIHGIDYESWLFETSPSPKAAEMRMKNVNTLFGWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E     +L ++++         +       ++V++MT+H +KGLE P V+LV     +  
Sbjct: 520 ELEEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVYLVGMEEGLLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNVDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   +  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQARKVVTPEERMHKGQANVANIR 664

Query: 720 ENTPLERE 727
                 +E
Sbjct: 665 AMLARAKE 672


>gi|308804119|ref|XP_003079372.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri]
 gi|116057827|emb|CAL54030.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri]
          Length = 859

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 103/748 (13%), Positives = 221/748 (29%), Gaps = 145/748 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVS--DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  E  E +   +  +   +++    +   +  +      I    +T +        ++ 
Sbjct: 129 AAKELRERLRDKIGEVAAKEITAGTFHSVAARMLRRHGERIPGIGRTGE--FTIYDADDS 186

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-KSQDEFIKIRDRFNTYKMFKSTL 124
             ++ S  + +    +K      +       K  +K        ++       K     +
Sbjct: 187 KQIVQSVLVNKFGESKKTAQPGPMRNWISTAKSCVKHSVGLRGSQMLRALEDAKKPIPPM 246

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           +     + L   YE+  ++    DF+DL+  T  +L   ++   +R   ++  + +L+DE
Sbjct: 247 SQQRFVE-LYDEYEDGLRQANAFDFDDLLSATVAML---EMCPDVRAYYERRWSQVLVDE 302

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDTS  Q+E+IR L++             ++F VGD  Q+IY + GAE   +   +   
Sbjct: 303 FQDTSTTQYELIRKLSQ----------PQGSVFVVGDADQAIYGWRGAEVANI---RTQF 349

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +      ++     L  ++RST+ I+     V         L   + T           
Sbjct: 350 DQDF----KEVQTHMLTTNYRSTSTIVEAAQAVIKESSFPSPLDLVAHT----------- 394

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
            G   +                        ++ + +     A  IA     ++       
Sbjct: 395 PGGRDV------------------------AIVEANDDREEAEFIALEARKLVQDS---- 426

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 ++  D+ VL R      ++            +               IKD++A 
Sbjct: 427 -----DLRYSDVAVLYRTNSQARVLEEAF----IRAGVPHTVVGDTSFYSRKEIKDMIAY 477

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------------TETVYEYIQK 472
            R + +  D +S   ++ +P        I K+                     +    + 
Sbjct: 478 LRIVSNSSDTVSLNRIINTPTRGIGNSTIEKLNAWLKTLPKKDGLSPSIGDALLRGAWKT 537

Query: 473 FANCGISKFQ----------------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                                     + ++ +      A   +P +    ++        
Sbjct: 538 NPGEQSELLPSADEMGLTARARTAVLNFVELMRACQQTAMNATPGELLEDVIKRTGYETM 597

Query: 517 FI-SRFGNEVIDVLDEFLNFTLRNEQN------SYSSLQELISELEQYPP--TIKRAHSA 567
            + +  G +    + E +N      ++          L+ L + LE      + +     
Sbjct: 598 VLDADDGVDRWAFVQELINLAKEPPRDVDETIQDRVGLEALGAFLEGVSLLTSAETDDVT 657

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             ++ ++MT+H +KGLE   VF+      +                              
Sbjct: 658 GGDKAKLMTMHASKGLEFDTVFIAGVEDGLIPF--------------------------- 690

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                  +        Q+E  RL YVG+TRA  +L++C         +S Q      + D
Sbjct: 691 -------IRNGDSDDDQDEEVRLFYVGITRAKRKLMLCHARERRRFGQSPQAARRSFLLD 743

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWS 715
           S        K             A   +
Sbjct: 744 SISATLTGTKKPERPVTLHGGVSARARN 771


>gi|153806228|ref|ZP_01958896.1| hypothetical protein BACCAC_00483 [Bacteroides caccae ATCC 43185]
 gi|149130905|gb|EDM22111.1| hypothetical protein BACCAC_00483 [Bacteroides caccae ATCC 43185]
          Length = 1056

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 126/864 (14%), Positives = 257/864 (29%), Gaps = 108/864 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            KN  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KNWATKTSPRYADIIALANSSLMQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                E  ++N       L+ +TN LL +      S+++  KI   I +++IDE QDTS +
Sbjct: 345  EEVRELNRENNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIRNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +              
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLNDHIDHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +I+   + +F+   +              +  +      VQ  
Sbjct: 451  --PIRVKTLATNRRSETNIIRFNNHIFTAATDYLNGVYKKQLNKDCQDLQKAYADVVQES 508

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                         +     S+ +   +          +   + +++ +           I
Sbjct: 509  PLNTQ--------KGYVKASFLEPDEEHDYTEQTLISLGEEVEHLLASG----------I 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               DI +LVRK K  P I         +    +V ++ F L    AI  ++   R++  +
Sbjct: 551  HLNDITILVRKNKSIPRIADYF---DKELHYKIVSDEAFRLDASFAICMMLDALRYLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  +  I E 
Sbjct: 608  NNKIA-------------RAQLAIAYQNEVLQKGLDWNTLLLLPTESYLPTTFLDKIKEF 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      E    L  F +      QN+ S L   I
Sbjct: 655  R----LMPLYELLEELFSL------FEMNRIKEQDAYLFAFFDAVTDYLQNNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               ++     K   S     +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RYWDET-LCSKTIPSGEIEGIRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQ 763

Query: 612  L--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +   I      ++   +I  +   H +     +   LLYV  TRA   LII     
Sbjct: 764  EAPFNALDILPINYSTQMAESIYGNDYLHERLQLWVDNLNLLYVAFTRAGKNLIIWSRKG 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      +      +       +                   +E 
Sbjct: 824  QKGTMSELLANTLPIVALKEGIEWEEDCYEQGELCPSE-------------------KEK 864

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
             K   ++     +        +        S         +E   SD++  NRG ++H L
Sbjct: 865  GKASTNKLTQKAEKLPIQMESMRHDIEFRQSNRSADFIQGIEEEDSDDRFINRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-ITRLLENPMMTTAMSCDSYSE 848
               I           I         +   +E ++ +   + +   +P +    S +    
Sbjct: 925  FSAIE--TADDIDPAIERLI--FEGVIRDQEKEDTVREVVQKAFSSPEIQDWYSGEWI-- 978

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            +     I   +K I+ + R D++ +    + + ++K     P         +  Q+  Y 
Sbjct: 979  LFNECAIIYKEKGILQTRRPDRVMMKDGQVVVVDFKFGKENP--------KYNKQVKGYM 1030

Query: 909  KILKDSYPNKSLVCLLIYVSEPKV 932
            ++L      K++   L YV E K+
Sbjct: 1031 QLLTKM-GYKNITGYLWYVDEEKI 1053


>gi|117920689|ref|YP_869881.1| exodeoxyribonuclease V subunit beta [Shewanella sp. ANA-3]
 gi|117613021|gb|ABK48475.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. ANA-3]
          Length = 1263

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 130/986 (13%), Positives = 286/986 (29%), Gaps = 170/986 (17%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
            P + +    L              +L +  L++    +  ++         D  E+L   
Sbjct: 262  PKLAEMFDQLDNFLAFGHGLPPLKVLEALSLSELKLNKGGVLPSASEAPLLDHMEQLAAL 321

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
             +                      +  + ++  + + K++  VL  +DL+      ++  
Sbjct: 322  INAIKPAF--------------LYSAKQGISERFAKQKQQKNVLTPDDLLTTLAAAMQAN 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR--------- 214
                 +   +       LIDE QDT  +Q+ +   + +        +S+           
Sbjct: 368  P--DTLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGLDTQNSAAEPKPRTDSKL 425

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +L  +GD KQ+IY+F GA+    +  +R  Q              L  ++RS+ +++  V
Sbjct: 426  SLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHY----------FLDTNYRSSRNLVAGV 475

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + +F+   +           ++   +       V+      +          +  +    
Sbjct: 476  NHLFAQHSDPFISQSIPFDPVK-TPASAAAKQLVEQAPNSAALR-------LKLLSEGET 527

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKR-VIQAKDILVLVRKRKDTPLITFLT 393
             L + S+   LA   A  I+ ++           +  + AKDI +LVR R +  ++    
Sbjct: 528  GLNKASARQTLAEDTAAEITRLLTQAANGQCRTPKGPLIAKDIAILVRDRNEAAVMKTAL 587

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                +  +I  V   R  + + +  +++  + R + S +D+ +    L + L  +  + I
Sbjct: 588  ----SKRQIGAVFLSRDSVFETVEAREMALILRALASPKDERALRSALATALLGYRAEQI 643

Query: 454  FKICTQRHETETVYEYIQKFANCGISK--------FQHVIKYIHELIHIAQFCSPHDFFT 505
                    + + + E   +       +          +  + +  L+H     S      
Sbjct: 644  HAFNQDEEQRQRLLEQFFELHQIWQKRGIMPALLSLANATQMVARLLHSPASTSTDQAEQ 703

Query: 506  LI---LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY----- 557
                 L A  G ++            L E L      +      +  L++  EQ      
Sbjct: 704  DAAAQLEASNGERRLTD------FRHLAELLQQ----KATEIDGISALLNWYEQQLIDNT 753

Query: 558  -PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                 +    +  N V+I+T+H +KGLE PV F+        + +    M    +  D  
Sbjct: 754  GTDEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSLARDNRRRPTPMLYHRTNADGA 813

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-NEKK 675
               +W  +            +  K+ T  E  RLLYV +TR      +   +++   +  
Sbjct: 814  QELVWDLEGTDEG------WEQAKQETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKTG 867

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
               +     +       +         +  K      E S        +  +    +L  
Sbjct: 868  LKSQLHETAIGYLLGITDTDCDFSRLQNAAKALVAGLESSQPAISIEVVADDIEANKLQT 927

Query: 736  EQKIPKKLFSP--IKNDINEPYILNPS--------------------------------- 760
                   L +    +       + + S                                 
Sbjct: 928  GGANTHTLSARKVSRQYRTPWRVGSYSGLVKNAPHAKATPGADDEVNAVLGTDTTNSAID 987

Query: 761  ---------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE--HKRKNFITSYC 809
                              L +  S  +  N G  +H +L++I          +    +  
Sbjct: 988  PIWPDHWWQEAADLQAQPLLNRFSFERGANAGSFMHLVLELIDFTQAQIDLPRELPKAML 1047

Query: 810  TKNAKLWPAKEYKNLLLSITRL----------LENPM--MTTAMSCDSYSEVSVSGKIN- 856
                        ++  L + +           L NP   +       +  E+     +N 
Sbjct: 1048 QYGIAPEWQPVLEDWYLEVLQAPLALMAQDNQLINPELCLAALAPQHTLVEMEFYLPLNR 1107

Query: 857  --------------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                                  +   ++ G ID     Q   +I +YK++H       + 
Sbjct: 1108 LKDTELNQLLGQYGYDTELQFDELQGMLKGFIDLTFEYQGKFYIADYKSNHLGDNIQAYH 1167

Query: 897  ---------PYTHIAQLSIYEKILKD 913
                      + +  Q  +Y   L  
Sbjct: 1168 HSALKQAIGDHRYDLQYILYSLALHR 1193


>gi|319902330|ref|YP_004162058.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108]
 gi|319417361|gb|ADV44472.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108]
          Length = 1104

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 128/882 (14%), Positives = 268/882 (30%), Gaps = 104/882 (11%)

Query: 82   KNIITQEINKKSPDLKEK------LKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLN 134
            KN  T+   ++   ++        L +  +     + R  N+ ++    L  L L  +++
Sbjct: 303  KNWATKTSRRRDDIVRLAETSLLPLLQDAERLRPQKSRTLNSCRLSLQHLNKLRLLNHID 362

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                   +++       L+ +T+ LL    +   S+++  KI   I +++IDE QDTS +
Sbjct: 363  EEVRTLNREHNRF----LLSDTSALLHKLVREGDSSFVFEKIGANIRNVMIDEFQDTSRM 418

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI------NQ 245
            QW+  R L  +                VGD KQSIY +   +   +              
Sbjct: 419  QWDNFRLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNSLGNDDETTPGYG 472

Query: 246  KRATNAGQKFS----IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            +   N G        +  L  + RS   I+   + +F++  N                 +
Sbjct: 473  QAMKNGGLPSHFPVRVETLKTNRRSETRIIRFNNALFTLAANYLNTLYLDELKKECYPLK 532

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                         V+Q   +   +     S+     + +        +   +  ++    
Sbjct: 533  RAYA--------DVAQESPKTKERGYIKASFLSPDEEHNYTEQTLAAMGKQVRELLDAG- 583

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                     ++  DI +LVRK K+ P I              VV ++ F L    A+  L
Sbjct: 584  ---------VRPDDITILVRKNKNIPPIADYFDKELRLA---VVSDEAFRLDASQAVCML 631

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            M   R++ + E+ ++   ++           IF          T  E +Q  A       
Sbjct: 632  MDALRYLSNPENIIAKASLI------VGYQTIFSPQA------TPAEAMQPQAILSDEML 679

Query: 482  -QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                   +  L         ++    + G     +             L  F +      
Sbjct: 680  PPAFTSRMETLR----LMPLYELLEELFGIFGMSRVEKQD------AYLFSFFDAVTEYL 729

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            QN+ S     I   E+     K       + +RI+++H +KGLE   V +     ++ + 
Sbjct: 730  QNNSSEPDSFIRFWEET-LCAKTIPGGETDGIRILSIHKSKGLEFHTVLVPFCDWKLENE 788

Query: 601  KHIKKMH--IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             + + +      +  +   +      +    ++  +     +     +   LLYV +TRA
Sbjct: 789  TNNQLVWCTAPEAPYNAINLIPVSYSATMAESVYQEDYLRERLQLWVDNLNLLYVALTRA 848

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
               LI+    +               +  +       ++    +                
Sbjct: 849  GKNLILWSKKDQKGTMAELLAHTLPQMAHTGTGGWNEEQSVYEDGQPCP----------- 897

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
              +            +++              +        S         ++   SD +
Sbjct: 898  --SATKAPATASPTFINKLTQKPAKLPVHMESMLHDIEFRQSNRSADFIAGVDEEQSDQR 955

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
              NRG ++H L   I T  E    + I+    +        E + +     R    PM+ 
Sbjct: 956  FINRGRLLHTLFSDIET--EADIDDAISRLVFEGIIGHTETE-QQIRELTRRAFTQPMVK 1012

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
               S      +     I   ++  + + R D++ +      + ++K              
Sbjct: 1013 DWYSGSWQ--LFNECDIIWQEEGELRTRRPDRVMMKDGETVVVDFKFGKPD--------K 1062

Query: 899  THIAQLSIYEKILKDS-YPNKSLVCLLIYVSEPKVFIIPQNK 939
             +  Q+  Y ++L    Y  + +   L YV E  V  +    
Sbjct: 1063 KYNKQVQGYMQLLACMGYAPQKIRGYLWYVEEGSVEEVRAAV 1104


>gi|150020318|ref|YP_001305672.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
 gi|149792839|gb|ABR30287.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
          Length = 1003

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 142/889 (15%), Positives = 297/889 (33%), Gaps = 107/889 (12%)

Query: 74  LTQKFTPQKNIIT--QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
           L       K +    + IN+    L+E LK  + E  +        +  +S   +L   K
Sbjct: 169 LKDVKEGIKELFNIYKSINEIEKILQETLKNWRTEMKRSTVSEKILENGESKSLALQAFK 228

Query: 132 YLN----AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           Y+       YE     N   DF+ ++  T D+L+  +    IR K  +   +I+IDE QD
Sbjct: 229 YMVLISKEIYEGFTIDNFEFDFKGVLEKTLDVLEDEN----IRKKYQERFKYIIIDEFQD 284

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q E+   L          H+S   LF VGD KQSIY F  ++    L+ ++  +K 
Sbjct: 285 TNYLQKELFDKL----------HTSKNYLFYVGDRKQSIYRFRNSDVSVFLKTQKDFEKN 334

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++RS + ++   + +       + L          ++        
Sbjct: 335 NE------EVLALKENYRSNSALVEYFNFISKNKIFNKQLVTGVEKYETFKTLEPDI--Y 386

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFD------------SLPQESSASILARRIAYTISN 355
            +LW              + +  S  D                ++     A   A+ +  
Sbjct: 387 EKLWFDEKMDLSISTISCEGNIPSLNDNEKGGRIKYIIVEEETKNLLEKEAEIAAFIVKK 446

Query: 356 MIGTDTIFSNGK----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           ++G              + I   D  +L   R        + + +   Y I +       
Sbjct: 447 LVGKKITVKGQNGTCIDKEITYGDFAIL---RSRLKDAEDVYKSIFEKYGIPLHVIGGKS 503

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
               L I  ++     + +  ++  F     SPL   +  +  +I   R E ET++E  +
Sbjct: 504 FYKQLEILAILNALFAVQNPNNNYFFTRYFFSPLVLGTFKEYDEIVKNRREDETLFETAK 563

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLD 530
           +          + IK + +   +  +  P +    ++      ++       E  I  + 
Sbjct: 564 RIKFKSERD--NAIKILEKYAQLKYYIRPTEILKGLINDLNYLEKLAFFEDRESAILNVK 621

Query: 531 EFLNFTLRNEQNSYSSLQ--ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           + L      +Q + S L+  +LI ++             +   V++MT+H +KGLE  +V
Sbjct: 622 KLLLEAQEFDQLADSFLELVKLIQKIGDTQEAEASIEDESSESVKLMTIHASKGLEFKIV 681

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS--TQEE 646
            L D   +   + +           +  G   ++            + +        + E
Sbjct: 682 ILGDLYDKQKENSN------HLRFYNKKGTSYFMLTKIMNEFPFDIVKEFYLDEIYNETE 735

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +R +YV +TRAS+  I               R + + +      +E+  +       + 
Sbjct: 736 LSRKMYVAITRASEMFIPIIF----------SRDFSNTLASYIMLEEKELEKLKEKVKSF 785

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           +     +   +  ++    ++ETI      + +        K+ I+   +      + + 
Sbjct: 786 ELIKLKDVKLYAEKHENKRKKETIP----LENLTDFSHLSYKSYISPTTLYGFLGNEKEA 841

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
           +    +    ++TF  G  IHK L  I TL +         Y                  
Sbjct: 842 QEEDITFALSDKTFQ-GSQIHKKLSNINTLSQ-------LKYLEN--------------T 879

Query: 827 SITRLLENPMMTTAMSC-DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
            I  +  +  +         YSE  +        +  ++ G  D++    + I++ ++K 
Sbjct: 880 DILPVKISTKIGFLFENSKVYSEWRLVKPFYHEGRKYMLFGIPDKVIFKDEKIYVIDFK- 938

Query: 886 HHHVPQEIEHIP-YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
                  +E++    +  Q+  Y  +L D    K     ++      + 
Sbjct: 939 ------NVENLKDEKYKFQIQFYMYLLHDF--GKVHKGYILSTKTGDIL 979


>gi|260857816|ref|YP_003231707.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O26:H11 str. 11368]
 gi|257756465|dbj|BAI27967.1| DNA helicase Rep and single-stranded DNA-dependent ATPase
           [Escherichia coli O26:H11 str. 11368]
 gi|323155180|gb|EFZ41364.1| ATP-dependent DNA helicase Rep [Escherichia coli EPECa14]
          Length = 673

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYSILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 IWEQERKVVSAEE 651


>gi|314918017|gb|EFS81848.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL050PA1]
 gi|314920393|gb|EFS84224.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL050PA3]
          Length = 1078

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 124/868 (14%), Positives = 246/868 (28%), Gaps = 140/868 (16%)

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A  +        K   V  F+DLI +    L+           +      +++DE QDT 
Sbjct: 205  ALSVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTD 264

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +QWE++R                  L+ +GD KQSIY+F GA+        +       
Sbjct: 265  PLQWEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ------- 307

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGT 307
                   ++ L +++R+   I+  V+ +FS  +    +S +  +      R       G 
Sbjct: 308  ---SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHDISMELVTAHHQESRIKTAATDGP 364

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               W Q       Q     +  T+  D    E         +   I  + G   +     
Sbjct: 365  RYHWSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDG 417

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LVR R+    +               V +    +    A +DL+ L   
Sbjct: 418  LRPLRPTDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLITLLEA 473

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D+     +  S L   +  D+    ++      +              +  V   
Sbjct: 474  LEN-TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAA 532

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +H                 ++    G +             +             + ++ 
Sbjct: 533  LHR----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATA 577

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    
Sbjct: 578  AWIREQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPI 637

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +     D     + I    +  +I    I+  ++  + E  RLLYV +TRA   + +   
Sbjct: 638  VWH---DGQRRVLDISSQGTDRSI---AIESHEEDERGENLRLLYVALTRARSAVRLWWS 691

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +     +  +V       E    +  T+        +   +T           
Sbjct: 692  PCP---LRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPWLNSGPIATVIAPANQKLLT 748

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYI------LNPSTIDTKGKTNLESLLSDNQ--- 778
             ++        +P+ L  P+               L+ +  +      ++  + D     
Sbjct: 749  RSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDD 808

Query: 779  ----------TFNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLS 827
                        + G ++H +L+ I T         +  +         P      L  S
Sbjct: 809  TAPGLCGLPGGTSFGTLVHTVLEYIDTAAIDLSSEVLSITRRALRMSPLPDVPPSELATS 868

Query: 828  ITRLLENPM--------MTTAMSCDSYSEVSVSGKIN----------------------- 856
            + ++L + +        +      D  +E++    +                        
Sbjct: 869  LEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPP 928

Query: 857  -------------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQEI----- 893
                          P  D  + G     ID +         + +YKT+            
Sbjct: 929  DDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHM 988

Query: 894  --------EHIPYTHIAQLSIYEKILKD 913
                          +  Q  +Y   L  
Sbjct: 989  YDAHTMRTMMFSSHYPLQGLLYSAALHR 1016


>gi|163839982|ref|YP_001624387.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953458|gb|ABY22973.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 1080

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 126/1062 (11%), Positives = 286/1062 (26%), Gaps = 215/1062 (20%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R G+  + +        W L    V   +  +S      +  +        + ++     
Sbjct: 120  RIGVERDATVLG-QAQCWQLASKIVEAYDGDLSRYSGASSTLVQAVISLASECAEHLQNP 178

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
                                     +  +   L     K +    K  +  +   +    
Sbjct: 179  RDVETWL----------------AALRDEFEALPLNTGKGRGPAGKALELADRLDIRAH- 221

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                     +   Y+ AK +   LD+ DL+     L         +  +   +   +L+D
Sbjct: 222  ------VAQMVQQYQLAKSQRNALDYGDLVALAAKLALN---VPEVAEQERLKHRVVLLD 272

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS  Q  +  +L            +   + AVGD  QSIY F GA   ++ R   I
Sbjct: 273  EFQDTSHAQLTLFAALFG----------AGHPVTAVGDPHQSIYGFRGASAGQLFRFPGI 322

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSR 301
             ++     GQ      L +++R++  IL   + + S       QG +E ST     +   
Sbjct: 323  FRR---ADGQPAETAALTVAWRNSLSILESANAMSSELNRRAEQGHAESSTQLSPLQPRP 379

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V+L        +                          A+ +A  I        
Sbjct: 380  GAPRGEVELSRFGTENEE--------------------------AQAVADRILA------ 407

Query: 362  IFSNGKKRVIQAKD--ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                  +R ++++D  + +L R+R     +            I         L     + 
Sbjct: 408  ------RRSVRSQDVSVAILCRRRTQFQALQTALEA----QNIDYEIVGLSGLLATPEVI 457

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------------ 461
            D+++  R ++      + + ++    +     D+  +                       
Sbjct: 458  DVVSTLRVLVDPTRSDALMRLMTGARWRIGSKDLMALADWSKFLVASAKRARKASPTVID 517

Query: 462  ---------------ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                           + +   +  ++ +  G+ +   +   +  L             + 
Sbjct: 518  DVAEAASLIEAIDALDADYWPDSARELSATGLQRLLALRDELRTLRRFVG-DDLLSLISE 576

Query: 507  ILGAKKGRQQFISRFG---NEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPT-- 560
            +        +  ++ G   +     LD F +      Q++    +   ++ L        
Sbjct: 577  VERTILLDIELAAKPGISYHRARHHLDAFQDAASSFLQSAERVDVLAFLAWLSAADGEEG 636

Query: 561  --IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSL 612
                         V+++TVH AKGLE   V++    ++ F                 P  
Sbjct: 637  GLEMLPVEPKSGAVQLLTVHAAKGLEWDEVYVPGLATKSFPSDRADHWGTGNRALPWPLR 696

Query: 613  NDDPGIPIWIPQSKSRN---NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             D   +P W  Q + +      +++  + +K    +E  RL YV  TRA   L +     
Sbjct: 697  GDRADLPEWKLQGEDQRTWIGELAEFTESVKDHALQEERRLAYVAYTRARSFLAVSTSKF 756

Query: 670  TSNE-----------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI-- 710
                                 ++ +  ++              ++     ++ + +W   
Sbjct: 757  AGTSVRAKEISPFLTELVDVAEQESAASYGLGFRHWPAEQHLPEENPEREAVIRAQWPFD 816

Query: 711  ---------------------------AYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                                       A       P    L        +  ++ + ++ 
Sbjct: 817  PLAGPYLKIGEKVVEPLGSRRAALLSAAQRVQAARPSELSLPELSARWGIEAKRLLEQRT 876

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTN--------LESLLSDNQTFNRGLIIHKLLQVIFT 795
                  D+  P  ++ ST+                           +G   H  ++    
Sbjct: 877  VRKQVIDVELPTHISASTLVELRVNPAAVVAQIRRPVPRKPGLAARKGTAFHAWVE---- 932

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS---EVSVS 852
                       SY  +  +L   +        +    +   +        ++      + 
Sbjct: 933  -----------SYFGRAGQLDLGEFPGAADDFVEDAYQLEQLRENFEASEWAAKQPSEIE 981

Query: 853  GKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
              I      +++ GRID +         + ++KT        + +      QL++Y    
Sbjct: 982  VPIETKIAGVVVRGRIDAVFQDADGGWELVDWKTGQLPKG--KELGDR-SVQLALYRLGW 1038

Query: 912  KDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                    + +     Y +  +   +      +    I ++ 
Sbjct: 1039 ARLKGIAVEKVRAAFYYAARNQTERVLDLAGEQELESIISQA 1080


>gi|53724405|ref|YP_104505.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344]
 gi|121598749|ref|YP_994582.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1]
 gi|124385848|ref|YP_001027516.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229]
 gi|126450982|ref|YP_001082587.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247]
 gi|238561590|ref|ZP_00441881.2| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4]
 gi|254174927|ref|ZP_04881588.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399]
 gi|254201583|ref|ZP_04907947.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH]
 gi|254206917|ref|ZP_04913268.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU]
 gi|254357473|ref|ZP_04973747.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280]
 gi|52427828|gb|AAU48421.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344]
 gi|121227559|gb|ABM50077.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1]
 gi|124293868|gb|ABN03137.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229]
 gi|126243852|gb|ABO06945.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247]
 gi|147747477|gb|EDK54553.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH]
 gi|147752459|gb|EDK59525.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU]
 gi|148026537|gb|EDK84622.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280]
 gi|160695972|gb|EDP85942.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399]
 gi|238524389|gb|EEP87822.1| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4]
          Length = 700

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 95/578 (16%), Positives = 180/578 (31%), Gaps = 125/578 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +  +Y         +DF+DLI    +L  + +    +R +    + ++LIDE QDT+
Sbjct: 175 AALVYRNYVATLHAYQAVDFDDLIRLPTELFARNE---PVRDRWQNRLRYLLIDEYQDTN 231

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L                  AVGD+ Q+IY + GA  + + +  +   K   
Sbjct: 232 ACQYELLKLLAG----------PRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPK--- 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  ILT  + V +           S           G   ++ 
Sbjct: 279 -----LHVIKLEQNYRSTVRILTAANNVIANNPKLFEKKLWSEH---------GMGDSIT 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                             +     A  + +          + ++  +R
Sbjct: 325 VTPC--------------------------NDEEHEAESVVFR---------LSAHKFER 349

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q +D  +L R      +   + R      +I  V +      D   IKDL A  R I 
Sbjct: 350 RTQFRDYAILYRGNFQARVFEQVLR----RERIPYVLSGGQSFFDKAEIKDLCAYLRLIA 405

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQ------KFANCGISKFQ 482
           + +DD +F+  + +P        +  +     +   +++E +       + +   +   +
Sbjct: 406 NADDDPAFIRAVTTPRRGIGNTTLEALGAFAGQAKVSLFEAVYMGGIEARLSARQVEPLR 465

Query: 483 HVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL----- 533
               +I  L   A          D    I         +  R        + EFL     
Sbjct: 466 IFCDFIQRLTDRADKEPATVVLDDMMEAIHYEAYLYDAYDERQAQTKWQNVLEFLEWLKR 525

Query: 534 -------NFTLRNEQNSYSSLQELISE-------LEQYPPTIKRA-HSANHNEVRIMTVH 578
                     +  E   + +   L          ++             + + VR+ TVH
Sbjct: 526 KGTKPEAEQAVDGEAEGFHNADGLADTGKNLLGLIQTVALMSMLEGKEEDPDAVRLSTVH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE P VFLV     +  H        +     +        +              
Sbjct: 586 ASKGLEYPHVFLVGVEEGIMPHSGGSDDGPIDDERIEEERIEEERR-------------- 631

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                      L+YV +TRA   L +         +++
Sbjct: 632 -----------LMYVAITRAQRSLHLNWCKKRKRARET 658


>gi|218550997|ref|YP_002384788.1| ATP-dependent DNA helicase Rep [Escherichia fergusonii ATCC 35469]
 gi|218358538|emb|CAQ91186.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           fergusonii ATCC 35469]
          Length = 673

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDSHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 VWEQERKVVSAEE 651


>gi|170751333|ref|YP_001757593.1| UvrD/REP helicase [Methylobacterium radiotolerans JCM 2831]
 gi|170657855|gb|ACB26910.1| UvrD/REP helicase [Methylobacterium radiotolerans JCM 2831]
          Length = 797

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 100/664 (15%), Positives = 194/664 (29%), Gaps = 115/664 (17%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+        +DF DL++    L ++      +         +IL+DE QDT++ 
Sbjct: 203 ALYTAYQARLATLNAVDFGDLLLLCLKLWRENPD---VLANYQDRFRYILVDEYQDTNVA 259

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          + + +  VGD+ QSIY + GAE   +LR +          
Sbjct: 260 QYLWLRLLAQ----------ARKNIACVGDDDQSIYGWRGAEVDNILRFEHDFP------ 303

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     + +  E+  G +                       
Sbjct: 304 --GAVVVRLERNYRSTGHILAAASGLIAKNESRLGKTL---------------------- 339

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        ++ + T  +DS  +       AR +A +I ++               
Sbjct: 340 ------RTDDEPGERVTVTGAWDSEEE-------ARMLAESIESLQSKQHPL-------- 378

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VLVR       I      L     +           +   I+D +A  R  ++ 
Sbjct: 379 --SEIAVLVRISAQMREIEDRFVQL----GLPYRVIGGPRFYERAEIRDALAYLRATVNV 432

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQHV 484
            DDL+F  ++ +P     +  + ++    R     +    ++       K       + +
Sbjct: 433 SDDLAFERIVNTPKRGLGDATLQQLHTYGRANRLPLRIAAERLCETDELKPRVRSTLRAL 492

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            +       + +     +    IL      + +      +    L+    F    E+   
Sbjct: 493 TESFSRWARLVESQPHSEVAQTILEESGYTEMWQKDRSADAAGRLENLKEFVRSMEE--- 549

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               +L + LE     ++ + +     V +MT+H AKGLE   VFL      +F ++   
Sbjct: 550 --FPDLAAFLEHVSLVMEASEAEGAERVSLMTLHAAKGLEFDTVFLPGWEDGLFPNQR-- 605

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                          +    ++  EE  RL +VG+TRA  +  +
Sbjct: 606 ------------------------------ALDESGRAGLEEERRLAHVGLTRARKRAKL 635

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               N       +       + +       V +     S     +            TP 
Sbjct: 636 SFAVNRRIHGLWSSTIPSRFIDELPETAVDVVEAPAQFSAGTSRFDRNPAPFGSSYGTPG 695

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG- 783
            +          +                                +         F  G 
Sbjct: 696 WQRAQANTAPGGRSGFGAAGGFRAAAPGGRSGGQAGGPRQIEGELIAKSTGAPSAFQAGQ 755

Query: 784 LIIH 787
            + H
Sbjct: 756 RVFH 759


>gi|323964026|gb|EGB59516.1| ATP-dependent DNA helicase Rep [Escherichia coli M863]
 gi|327250630|gb|EGE62336.1| ATP-dependent DNA helicase Rep [Escherichia coli STEC_7v]
          Length = 673

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 220/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           +     +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAMGERD------------RIFAHCYGLYDSHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 249

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 250 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 301

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 302 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 326

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 327 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 373

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 374 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 433

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 434 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 493

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 494 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 553

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 554 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 585

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 586 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 638

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 639 VWEQERKVVSAEE 651


>gi|308188833|ref|YP_003932964.1| rep helicase, a single-stranded DNA dependent ATPase [Pantoea
           vagans C9-1]
 gi|308059343|gb|ADO11515.1| rep helicase, a single-stranded DNA dependent ATPase [Pantoea
           vagans C9-1]
          Length = 673

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 112/716 (15%), Positives = 236/716 (32%), Gaps = 140/716 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I+ + +L +E         A  ++        +++ +
Sbjct: 59  ASREMKERV-AQTLGRKEARGLLISTFHTLGLEI--IKRETAALGMKSNFSLFDDQDQLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIRDRFNTYKMFKSTLAS 126
           LL                T+E  ++   L ++L     +    + D        KS    
Sbjct: 116 LLKEL-------------TKEWLEEDKTLLQQLISTISNWKNDLIDPQGAAAQAKSQQD- 161

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +  +  A Y +  K   VLDF+DLI+    LL++      +R +  Q I ++L+DE Q
Sbjct: 162 -NIFAHCYALYSQHLKACNVLDFDDLILLPTLLLQRN---QEVRERWQQRIRYLLVDEYQ 217

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+E+++ L            +      VGD+ QSIYS+ GA P+ ++   +    
Sbjct: 218 DTNTSQYELVKLLVG----------TRARFTVVGDDDQSIYSWRGARPQNLVLLNQDFPA 267

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +++L  ++RS+  IL   + + +   +       S               
Sbjct: 268 --------LEVVKLEQNYRSSQRILKAANILIANNPHVFEKRLFS--------------- 304

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                               E        +   +S    A R+         T  + ++ 
Sbjct: 305 --------------------ELGQGSELKVLTANSEEHEAERV---------TGELIAHH 335

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                Q KD  +L R    +              +I    +          IKDL+A  R
Sbjct: 336 FINRTQYKDYAILYRGNHQSRTFEKFL----MQNRIPYRISGGTSFFSRPEIKDLLAYLR 391

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGIS 479
            + + EDD +F+ ++ +P        + K+       +++++            +  G+ 
Sbjct: 392 VLTNPEDDSAFLRIVNTPRREIGPATLQKLGEWANLRSKSLFNASFDVGLGQTLSGRGLE 451

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLN 534
             Q    +++E+I +++    +     ++             G        +  ++    
Sbjct: 452 HLQRFTHWLNEIIQLSEREPVNA-VRDLIRGIDYESWLFETSGSPKAAEMRMKNVNTLFQ 510

Query: 535 FTLRNEQ----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           +     +    +   +L ++++         +       ++V++MT+H +KGLE P VFL
Sbjct: 511 WMTEMLEGSDIDEPMTLAQVVTRFTLRDMMERSESDEELDQVQLMTLHASKGLEFPYVFL 570

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V     +  H+                                       ++  EE  RL
Sbjct: 571 VGMEEGLLPHQSSID-----------------------------------ENNIEEERRL 595

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            YVG+TRA  +L            +  +      + +   +D + +  +   S  +
Sbjct: 596 AYVGITRAQKELTFTLCRERRQYGELIRPEPSRFLLELPQDDLQWETERKVVSAEE 651


>gi|227114355|ref|ZP_03828011.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 673

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 99/639 (15%), Positives = 214/639 (33%), Gaps = 123/639 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  Q +      L++ +    +    + D        +S      L  +  +
Sbjct: 112 DQMALLKELTEQWLENDKVLLQQLISTISNWKNDLIDPAGAAATARSERD--RLFVHCYS 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  +   VLDF+DLI+    LLK+      +R +    + ++L+DE QDT+  Q+E+
Sbjct: 170 LYHDHLRACNVLDFDDLILLPTLLLKQN---VEVRERWQNRLRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++  ++             
Sbjct: 227 VKLLVG----------TRARFTVVGDDDQSIYSWRGARPQNLVLLQQDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S              G     + + 
Sbjct: 269 DVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSEL------------GYGDELKVIT 316

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           + ++                          A R+            + ++   +  Q  D
Sbjct: 317 ANNED-----------------------HEAERVV---------GELIAHHFIKKTQYGD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L   +        +I    +          IKDL+A  R + + +DD 
Sbjct: 345 YAILYRGNHQSRLFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPDDDS 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHVIKYI 488
           +F+ ++ +P        + K+        + ++                +   Q   +++
Sbjct: 401 AFLRIVNTPKREIGPATMKKLGEWAGQRNKGLFSASFDLGLSQTLTGRGLESLQRFTQWL 460

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----E 540
            E+  +A+        D    +       +   S    E  +  +++  ++        +
Sbjct: 461 AEIARLAEREPVAAVRDLIHGLDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSD 520

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 521 LDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       +   +E  RL YVG+TRA  
Sbjct: 581 QSSID-----------------------------------EDNVDEERRLAYVGITRAQR 605

Query: 661 QLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           +L   +CK      E    + + + +           ++
Sbjct: 606 ELFFTLCKERRQYGELVRPEPSRFLLELPQDDVVWETER 644


>gi|304398128|ref|ZP_07380003.1| ATP-dependent DNA helicase Rep [Pantoea sp. aB]
 gi|304354414|gb|EFM18786.1| ATP-dependent DNA helicase Rep [Pantoea sp. aB]
          Length = 673

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 111/716 (15%), Positives = 237/716 (33%), Gaps = 140/716 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I+ + +L +E         A  ++        +++ +
Sbjct: 59  ASREMKERV-AQTLGRKEARGLLISTFHTLGLEI--IKRETAALGMKSNFSLFDDQDQLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK-SQDEFIKIRDRFNTYKMFKSTLAS 126
           LL                T+E  ++   L ++L     +    + D      + +S    
Sbjct: 116 LLKEL-------------TKEWLEEDKTLLQQLISTISNWKNDLIDPQGAAALARSQQD- 161

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +  +  A Y +  K   VLDF+DLI+    LL++      +R +  Q I ++L+DE Q
Sbjct: 162 -NIFAHCYALYSQHLKSCNVLDFDDLILLPTLLLQRN---QEVRERWQQRIRYLLVDEYQ 217

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+E+++ L            +      VGD+ QSIYS+ GA P+ ++   +    
Sbjct: 218 DTNTSQYELVKLLVG----------ARARFTVVGDDDQSIYSWRGARPQNLVLLNQDFPA 267

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +++L  ++RS+  IL   + + +   +       S               
Sbjct: 268 --------LEVVKLEQNYRSSQRILKAANILIANNPHVFEKKLFS--------------- 304

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                               E        +   +S    A R+         T  + ++ 
Sbjct: 305 --------------------ELGQGSELKVLTANSEEHEAERV---------TGELIAHH 335

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                Q KD  +L R    +              +I    +          IKDL+A  R
Sbjct: 336 FINRTQYKDYAILYRGNHQSRTFEKFL----MQNRIPYRISGGTSFFSRPEIKDLLAYLR 391

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGIS 479
            + + EDD +F+ ++ +P        + K+       +++++            +  G+ 
Sbjct: 392 VLTNPEDDSAFLRIVNTPRREIGPATLQKLGEWANLRSKSLFNASFDVGLGQTLSGRGLE 451

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLN 534
             Q    +++E+I + +    +     ++             G        +  ++    
Sbjct: 452 HLQRFTHWLNEIIQLTEREPVNA-VRDLIRGIDYESWLFETSGSPKAAEMRMKNVNTLFQ 510

Query: 535 FTLRNEQ----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           +  +  +    +   +L ++++         +       ++V++MT+H +KGLE P VFL
Sbjct: 511 WMTQMLEGTDIDEPMTLAQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVFL 570

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V     +  H+                                       ++  EE  RL
Sbjct: 571 VGMEEGLLPHQSSID-----------------------------------ENNIEEERRL 595

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            YVG+TRA  +L            +  +      + +   +D + +  +   S  +
Sbjct: 596 AYVGITRAQKELTFTLCRERRQYGELIRPEPSRFLLELPQDDLQWETERKVVSAEE 651


>gi|15599480|ref|NP_252974.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAO1]
 gi|9950504|gb|AAG07672.1|AE004844_4 exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAO1]
          Length = 1245

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 134/1055 (12%), Positives = 295/1055 (27%), Gaps = 140/1055 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-----QTQ 60
             LS  ES   + +      Y Q+  ++     +       +    + L+        + +
Sbjct: 219  ALSAPESLAALLEQ-GGDWYRQLDQLDAQARAAWRAARVELEALLRDLRPYLNGNSYRGK 277

Query: 61   CIEERFSLLSSFFLT-QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--KIRDRFNTY 117
              +E F           +   Q   + +    +     +++                   
Sbjct: 278  DSDETFDAWLQALADWSEGGEQPANLGKFGQTRIKLTAKRVAPEHAALRAIDAWAAHQEE 337

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +   +    L     +    E  K++   + F+DL+   +  L+       +   I ++ 
Sbjct: 338  RPDLAPHLLLHALGEVGHELEIEKQRRAEIGFDDLLSRLDRALQGPG-GERLAQLIREQF 396

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               LIDE QDT  +Q+ +   +           +    LF +GD KQ+IY+F GA+    
Sbjct: 397  PVALIDEFQDTDPVQYRIFERIYRIAADPDEPQARETGLFMIGDPKQAIYAFRGADIHTY 456

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            LR +            +     L  +FRSTA ++   ++ F+  E     +         
Sbjct: 457  LRAREA---------TRGRHYTLGKNFRSTAAMVAAANRCFAFAEEHPRGAFRFAREGLE 507

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                   V      E+++            +       L   +    +A R A  I   +
Sbjct: 508  NPVPFHAVDAQGRAERLLIDGAEAPAMTFWNLDVEAGVLGSAAYRQEMAERSASAIRRWL 567

Query: 358  ------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                          G  R ++  DI +LVR R +      +   L      SV  +DR  
Sbjct: 568  SLADLGRAGFADEQGGWRALRPADIAILVRGRAEA---EAIRSALAARRLASVYLSDRDS 624

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            + D     DL+   R       D      L +   +     + ++           E   
Sbjct: 625  VFDSQEAADLLHWLRACADPGADALLRVALATRSLHLDWATLERLNQD--------ELFW 676

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            +        ++   +    L  + +  +  +    +L    G +   +         L E
Sbjct: 677  ERMVLRFRDYRRSWQAQGVLPMLRRLLADFELPARLLRHADGERSLTNLL------HLAE 730

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            +L          ++ ++ L  +++           ++ + ++++T+H +KGLE P+V L 
Sbjct: 731  WLQRAAVELDGEHALIRHLAEQVQSPGSEEILRLESDADLIKVVTIHKSKGLEYPLVLLP 790

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               S      +               +     +        +   +        E  RLL
Sbjct: 791  FICSWRELDGNSGAPASFHEDGAAGRVIELARRK----EQAARAYEQANDERLGEDMRLL 846

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-----------------VYDSFHNDER 694
            YV +TRA   + +      ++  KS +     +                    +   + R
Sbjct: 847  YVALTRARHSVWLGIAPLVASNSKSPELHKGALGYLLAGGATIGSDGLGQCLAALRGECR 906

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               ++     + + ++A                     +     +  +  + + +D    
Sbjct: 907  EIVVEPAPEADAERYVAGRGQGLGQARETRRSSREKWWVASYSGLQLQASAGLDDDEVLE 966

Query: 755  YILNPSTIDTKGKTNLESLLS------------------DNQTFNRGLIIHKLLQV---- 792
               +   I  +  T  E   S                    +    G  +H LL+     
Sbjct: 967  SDESQEPISAEEATFHEEGRSAEQPPVAHASEMRDDLHRFPRGPAPGTFLHGLLEWAGRE 1026

Query: 793  ---IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLENPMMT---------- 838
               +      +R+  +   C        A+     L       L  P             
Sbjct: 1027 GFDVARADAQRRRELVARRCDLRGWKDWAEPLDLWLEQYLAEPLRWPGGETSLAGLVAYQ 1086

Query: 839  -----TAMSCDSYSEV------------SVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
                    +    +E             +    +     + +  G +D +   Q   ++ 
Sbjct: 1087 VEMEFWFATHQVQAEAIDALVRRHTLGGAARPALAPTLLNGMFKGFVDLVFEHQGRFYVA 1146

Query: 882  EYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDS---------YPNKSLVCL 923
            +YK++     +  + P           +  Q  +Y   L            Y       +
Sbjct: 1147 DYKSNWLGADDGAYSPEAMTAAVLENRYDLQYVLYLLALHRQLKARLPDYDYDRHMGGAV 1206

Query: 924  LIYVSEPKV------FIIPQNKLNKAFAEISTKIP 952
             +++   +       F  P  +L +    + +  P
Sbjct: 1207 YLFLRGTRAATQGLHFERPPRELIERLDALFSGQP 1241


>gi|297521789|ref|ZP_06940175.1| ATP-dependent DNA helicase Rep [Escherichia coli OP50]
          Length = 655

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 93  TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 150

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 151 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 207

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 208 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 249

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 250 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 286

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 287 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 325

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 326 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 381

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 382 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 441

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 442 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 501

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 502 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 561

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 562 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 586

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 587 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 633


>gi|297518772|ref|ZP_06937158.1| exonuclease V subunit beta [Escherichia coli OP50]
          Length = 1028

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 112/796 (14%), Positives = 254/796 (31%), Gaps = 86/796 (10%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 279  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 337

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 338  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 389

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 390  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 439

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 440  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 489

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 490  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 549

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 550  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 606

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 607  D--------EHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 658

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 659  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 712

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 713  TIHKSKGLEYPLVWLPFITNFRVQEQAFYHDR-------------HSFEAVLDLNAAPES 759

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 760  VDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 819

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +   +   E   + +          +  
Sbjct: 820  PQDAAGLRTCIEALCDDDIAWQTAQIGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSY 879

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 880  SGLQQRGHGIAQDLMPRLNVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 939

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
                            +          + ++ +   N    +     + ++  V  +   
Sbjct: 940  PVDPNWVREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQ-VEMEFYL 998

Query: 858  PKKDIIISGRIDQISI 873
            P  + +I+ ++D +  
Sbjct: 999  PISEPLIASQLDTLIR 1014


>gi|255691765|ref|ZP_05415440.1| ATP-dependent helicase [Bacteroides finegoldii DSM 17565]
 gi|260622481|gb|EEX45352.1| ATP-dependent helicase [Bacteroides finegoldii DSM 17565]
          Length = 1056

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 124/827 (14%), Positives = 263/827 (31%), Gaps = 105/827 (12%)

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIR 170
             N+ ++    L  + L   ++    +    N       L+ +TN LL +      S+++ 
Sbjct: 324  LNSCRLSLQHLNKVQLLANIDEEVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVF 379

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             KI   I +++IDE QDTS +QW   + L  +                VGD KQSIY + 
Sbjct: 380  EKIGTNIRNVMIDEFQDTSRMQWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
              +   +       +           +  L  + RS  +I+   +++F+   +       
Sbjct: 434  NGDWGILNSLNDRIEHF------PIHVRTLATNRRSETNIIRFNNRIFTAAADYLNGIYR 487

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
            S      +  +      V        Q  S+   +     S+ +   +          + 
Sbjct: 488  SQLGEDCKDLQKAYADVV--------QESSKKTEKGYVKVSFLEPDEEHDYTEQTLISLG 539

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              ++ ++ +           ++  DI +LVRK K+ P I         +    +V ++ F
Sbjct: 540  EEVNRLLSSG----------VRLNDIAILVRKNKNIPRIADYF---DKELHYKIVSDEAF 586

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             L   LAI  ++   R++    + ++                +          + +    
Sbjct: 587  RLDASLAICMMLDALRYLSDGNNKIA-------------RAQLAVAYQNEVLRKGLDWNT 633

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                          ++ + EL         ++    +         F     ++    L 
Sbjct: 634  LLLLPVENYLPAAFLEKLEELR----LMPLYELLEELFSI------FEMNRISDQDAYLF 683

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             F +      Q++ S L   I   ++               +RI ++H +KGLE   V L
Sbjct: 684  AFFDAVTDYLQSNSSELDGFIRYWDETLCGKTIPSGEVEG-IRIFSIHKSKGLEFHTVLL 742

Query: 591  VDTGSQVFSHKHIKKMHIMPS--LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                 ++ +  + + +   P     D   I      ++   +I  D   + +     +  
Sbjct: 743  PFCDWKLENETNGQLVWCTPQVAPFDGLDILPINYSTQMAESIYGDDYLNERLQLWVDNL 802

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
             LLYV  TRA   LII                   +V      +   +  +     + + 
Sbjct: 803  NLLYVAFTRAGKNLIIWSKKGQKGTMSEVLANVLPVVALKEDIEWDEECYEQGELCSSE- 861

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                              EE  K   ++     +        +        S        
Sbjct: 862  ------------------EEKAKTSTNKLTQKPEKRPIRMESMRHDIEFRQSNRSADFIQ 903

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS- 827
             +E   SD++  NRG ++H L   I T  E    + I         +    E + ++   
Sbjct: 904  GIEEEDSDDRFINRGRLLHTLFSAIET--EEDIDSAIDRLV--FEGVIRDDEKEGMVREV 959

Query: 828  ITRLLENPMMTTAMSCDSYSEVSV--SGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
            + +   +P +    S     E ++     I   +K ++ + R D++ + +  + + ++K 
Sbjct: 960  VQKAFSSPEIQDWYSG----EWTLFSECAIIYKEKGVLQTRRPDRVMMKENQVVVVDFKF 1015

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
                P         +  Q+  Y ++L      +++   L YV E ++
Sbjct: 1016 GKENP--------KYNKQVKGYMQLLSKM-GYENITGYLWYVDEERI 1053


>gi|330501223|ref|YP_004378092.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina NK-01]
 gi|328915509|gb|AEB56340.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina NK-01]
          Length = 658

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 96/633 (15%), Positives = 207/633 (32%), Gaps = 125/633 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +  + ++K  +   +++ I   +     +  K        A  +  HY+   K    +DF
Sbjct: 118 DDGADEIKNYIDSWKNDLILPDEALANARGPKE-----QTAAIVYLHYQRTLKAYNAVDF 172

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            DLI+    L ++    A I  K    I ++L+DE QDT+  Q+ +++ L          
Sbjct: 173 NDLILLPVKLFQEH---ADILEKWQNRIRYLLVDEYQDTNASQYLLVKMLVGM------- 222

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                    VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ 
Sbjct: 223 ---RNQFTVVGDDDQSIYAWRGARPENLMLLKEDYP--------SLKVVMLEQNYRSTSR 271

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + +   +                         QLW ++    +          
Sbjct: 272 ILKCANVLIANNPHVFEK---------------------QLWSEMGHGDEI--------- 301

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +  +      R+A  I              +R     D  +L R      L+
Sbjct: 302 -----RVIRTRNEDAECERVALEI-------LTEHLRTQRP--YSDFAILYRGNYQAKLM 347

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     ++I    +          +KDLM+  R +++ +DD +F+ ++  P     
Sbjct: 348 ELKLQ----HHQIPYRLSGGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVINVPRREIG 403

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +             + Q   K++  +        P  
Sbjct: 404 STTLEKLGNYASERKISMYAAAGEIGLGEHLDARFTERLQRFTKWMDRVRQECAQNDPIA 463

Query: 503 FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
               ++              ++      +  +   +      L  +++   ++++ I +L
Sbjct: 464 AIRSMVMDIDYENWLRQNASSDKVAEARMGNVWFLVEALKSTLERDEDGDMTIEDAIGKL 523

Query: 555 EQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                   ++        V++MT+H +KGLE P V+++    ++  H             
Sbjct: 524 VLRDMLERQQEEEEGAEGVQMMTMHASKGLEFPSVYIIGFEEEILPH------------- 570

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    ++  T EE  RL YVG+TRA   L +   +     
Sbjct: 571 ----------------------RSSIEADTIEEERRLAYVGITRAKRNLALTFAAKRKQY 608

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +    +    + +    D   + ++   +  K
Sbjct: 609 GEIIDCSPSRFLDELPQEDLVWEGLEEAPTEVK 641


>gi|146305294|ref|YP_001185759.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina ymp]
 gi|145573495|gb|ABP83027.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina ymp]
          Length = 669

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 94/636 (14%), Positives = 206/636 (32%), Gaps = 125/636 (19%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
             +  + ++K  +   +++ I   +     +  K        A  +  HY+   K    +
Sbjct: 127 AGDDGADEVKNLIDSWKNDLILPDEALAKARGPKE-----QTAAIVYLHYQRTLKAYNAV 181

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF DLI+    L ++      I  K    I ++L+DE QDT+  Q+ +++ L        
Sbjct: 182 DFNDLILLPVKLFQEHPD---ILEKWQNRIRYLLVDEYQDTNASQYLLVKMLVGM----- 233

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST
Sbjct: 234 -----RNQFTVVGDDDQSIYAWRGARPENLMLLKEDYP--------SLKVVMLEQNYRST 280

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           + IL   + + +   +                         QLW ++    +        
Sbjct: 281 SRILKCANILIANNPHVFEK---------------------QLWSEMGHGDEI------- 312

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   + +  +      R+A  I              +R     D  +L R      
Sbjct: 313 -------RVIRTRNEEAECERVALEI-------LTEHLRTQRP--YSDFAILYRGNYQAK 356

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           L+    +     ++I    +          +KDLM+  R +++ +DD +F+ ++  P   
Sbjct: 357 LMELKLQ----HHQIPYRLSGGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVINVPRRE 412

Query: 448 FSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSP 500
                + K+         ++Y    +             + Q   +++  +        P
Sbjct: 413 IGSTTLEKLGNYASERKISMYAAAGEIGLGEHLDARFTERLQRFTRWMDRVRQECAQNDP 472

Query: 501 HDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELIS 552
                 ++              ++      +  +   ++     L  +++   ++++ I 
Sbjct: 473 IAAIRSMVMDIDYENWLRQNASSDKVADARMGNVWFLVDALKNTLERDEDGDMTIEDAIG 532

Query: 553 ELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           +L        ++        V++MT+H +KGLE P V+++    ++  H           
Sbjct: 533 KLVLRDMLERQQEEEEGAEGVQMMTMHASKGLEFPSVYIIGFEEEILPH----------- 581

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                      ++  T EE  RL YVG+TRA   L +   +   
Sbjct: 582 ------------------------RSSIEADTIEEERRLAYVGITRAKRNLTLTFAAKRK 617

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
              +    +    + +    D   + ++      K 
Sbjct: 618 QYGEVIDCSPSRFLDELPPEDLVWEGLEEAPVEVKA 653


>gi|317476247|ref|ZP_07935498.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907658|gb|EFV29361.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA]
          Length = 1087

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 122/842 (14%), Positives = 269/842 (31%), Gaps = 75/842 (8%)

Query: 100  LKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L +  +     ++R  N+ ++    L  L L  +++       +++       L+ +T+ 
Sbjct: 312  LLQDAERLRPQKNRTINSCRLSLQHLNKLQLLNHIDEEVRTLNREHNRF----LLSDTSA 367

Query: 159  LLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            LL        S+++  KI   I +++IDE QDTS +QW+  R L  +             
Sbjct: 368  LLHKLVHEGDSSFVFEKIGANIRNVMIDEFQDTSRMQWDNFRLLLLEGLS------QGAD 421

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
               VGD KQSIY +   +   +        +          +  L ++ RS  +++   +
Sbjct: 422  SLIVGDVKQSIYRWRNGDWGILNSLGSTRSESQLPFPFPVRVKTLKINRRSETNVINFNN 481

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            ++F+   +                 +             V+Q   + + +     S+ + 
Sbjct: 482  RLFTAAVDHLNTLYLEELKEECFPLKEAYA--------DVAQESPKTDNKGYVKVSFIEP 533

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              ++S A      +   +  ++             ++  DI +LVRK K+ P I      
Sbjct: 534  DEEQSYAEKTLSALGEEVQRLLSAG----------VKLNDITILVRKNKNIPSIADYF-- 581

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
               +  + +V ++ F L   LAI  L+   R++ + E+ ++   ++ +     S +   +
Sbjct: 582  -DKELHLPIVSDEAFRLDASLAICMLIDALRYLSNPEEKIARASLIANYKLQTSHERGTE 640

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                       ++ +       +      I  + EL         ++    +        
Sbjct: 641  TGKAGGNLADWHQLLTADVATVLP--AEFISRMDELR----LMPLYELLEELFTLFN--- 691

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
              +   G +    L  F +      Q++ S L   I   ++     K   S   + +RI 
Sbjct: 692  --MGSIGKQ-DAYLFAFFDAVTEYLQSNSSDLDGFIRYWDET-LCSKTIPSGEMDGIRIF 747

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSH--KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            ++H +KGLE   V +     ++ +     +       S  +   +           ++  
Sbjct: 748  SIHKSKGLEFHTVLIPFCDWKLENETYNQLVWCTAPESPYNSIDLVPVNYSFTMAESVYR 807

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +     +   LLYV  TRA   LI+    +               V  +     
Sbjct: 808  QDYLDERLQLWVDNLNLLYVAFTRAGKNLILWSKKDQKGTMAELLSAALPRVAQAGEGSW 867

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                         ++      +    E +P     T  +++++              +  
Sbjct: 868  N----------EDEKIYESGTTCPSEEKSPHSAGNTESKVVNKLAQKPVKLPVHMESMRH 917

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                  S         ++   S  +  NRG ++H L   I T  E    + I        
Sbjct: 918  DIEFRQSNRSADFIAGVDEAESSQRFINRGRLLHTLFSAIET--EEDIDDAINRLV-FEG 974

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873
             +   +  + +     R    P +    S      +     I   +   + + R D++ +
Sbjct: 975  VIGRTETEEEIRELTHRAFSQPQIKDWYSGTWQ--LFNECDIIWQENGELRNRRPDRVMM 1032

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS-YPNKSLVCLLIYVSEPKV 932
                I + ++K               +  Q+  Y ++L    Y   ++   L YV E ++
Sbjct: 1033 RNGTIVVVDFKFGKPS--------KRYNKQVQGYIELLVRMGYDANAISGYLWYVEE-EI 1083

Query: 933  FI 934
              
Sbjct: 1084 IE 1085


>gi|289208791|ref|YP_003460857.1| exodeoxyribonuclease V subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288944422|gb|ADC72121.1| exodeoxyribonuclease V, beta subunit [Thioalkalivibrio sp. K90mix]
          Length = 1240

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 155/1018 (15%), Positives = 304/1018 (29%), Gaps = 154/1018 (15%)

Query: 1    LKNRFGLSLNESYELIYKDL---WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57
            L +  GL    + + +Y +L           +   +  +   E     +   A   QQ  
Sbjct: 210  LSDTVGLEPYRTPDGLYAELATRLARLAELKAVWREDAAEV-ERQFRALHASALNRQQYQ 268

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD-LKEKLKKSQDEFIKIRDRFNT 116
            +   +       +         P+K   T  + +     + E+LKK Q     +   F  
Sbjct: 269  KPDDLIAAMHAWAEDP--AALLPEKVGGTPVLERMCEQGVGERLKKGQSLPDDLHPAFVA 326

Query: 117  YKMFKSTLA-----SLTLAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
                    A      L  A   ++  + +A++    + F DL++   D L        + 
Sbjct: 327  LNAAPEVCADDSERLLQAASVEIDRQFRQAQRVRVQMGFNDLLLRLRDALDGPG-GEALA 385

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              + ++    L+DE QDT  +Q+ ++  +          + + + L  +GD KQ+IY F 
Sbjct: 386  ETLRRQFPVALVDEFQDTDPVQYRILERVYR-----IEDNPAEQGLLLIGDPKQAIYGFR 440

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN--AQGLS 288
            GA+    L+ +R                 LP +FRSTA ++  V+++F+  +        
Sbjct: 441  GADIHSYLKARRA---------TAGRHYTLPRNFRSTARLVGAVNRLFAHADGWPEGAFL 491

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW-TSYFDSLPQESSASILAR 347
                        R+      +       +HD    P    W T    S+        +A 
Sbjct: 492  FGQGDAGELPFHRVDAQDRGERL-----EHDGAEVPALTLWCTDPGTSVGTGVYREQMAA 546

Query: 348  RIAYTISNMIGTDTI-----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  +  ++                R ++ +DI VLVR R +  L+    R        
Sbjct: 547  AAAEQMVRLLNGGADGTCGFRDGEGWRPVRPRDIAVLVRGRVEARLMQEALRA---RGVR 603

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            SV  ++   +       DL+   R       +      L +P    S  D+ ++ T    
Sbjct: 604  SVYLSEGESVFATPEAGDLLRWLRACAEPTSERLLRAALATPTLGQSLADLHRLTTD--- 660

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                 E   +       +++ + +    L  + +     D    +L +  G +   +   
Sbjct: 661  -----ELRWEHRVEQFREYRRLWQTRGVLPMLRRLLHDFDVPRRLLASADGERALTNLL- 714

Query: 523  NEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                  L E L      L  EQ     L E                 ++ + V+++T+H 
Sbjct: 715  -----HLSELLQRAAAELDGEQALIRHLIEHREGERAAADEQVLRLESDEDLVKVVTLHK 769

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            +KGLE P+VFL    +            I       P     +              +  
Sbjct: 770  SKGLEYPLVFLPFVCAFRAVDPKKDVPRIDRPPGGRPRWIFRMDSR---------AQERA 820

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW------------------ 681
             +    E  RLLYVGMTRA     +      S   K N+                     
Sbjct: 821  DRERLAEDLRLLYVGMTRARHACWMGLAPIVSGRGKENELHRSAVGYLLNGPEPMPNGEL 880

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             D + ++  ++  +    L   +     +A + +      TP         +     I  
Sbjct: 881  EDRLQEARGDESAIAIEPLPEIMGTSVRLAQQTAALGRARTPTRPVREPWWVASYSAIAH 940

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESL---------------------LSDNQTF 780
               +     +    +   S ++   +   E+                          +  
Sbjct: 941  PDEAHAPAPLVADPVAPDSALEDLLRERAETPGAGADPSHGVSRPEVPVAGGLHDFPRGP 1000

Query: 781  NRGLIIHKLLQVIFTL-------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR--- 830
              G  +H LL+               +  + +   C +      A   ++ +  +     
Sbjct: 1001 APGTFLHGLLEWAAEQGWEAVVTDRARLDDEVRRRCEQRDWGDWAPVVQDWMRRLITAEY 1060

Query: 831  ----------------------LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG-- 866
                                  L E   + +     +  E  + G+   P  D +++G  
Sbjct: 1061 ALASGGSFRLDELGVYQPELEFLFETRWLQSRRLDAAVCEQLLPGQARPPAGDRLLNGML 1120

Query: 867  --RIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
               +D +   +   ++ +YK++   P    + P           +  QL IY   L  
Sbjct: 1121 KGFVDLVFEHEGRYYVADYKSNWLGPGPDAYGPERLRDAVLEHRYDLQLVIYTLALHR 1178


>gi|319791429|ref|YP_004153069.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315593892|gb|ADU34958.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 704

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 97/605 (16%), Positives = 184/605 (30%), Gaps = 117/605 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +  HYEE  +    +DF+DLI     LL        +R K    + HIL+DE QD
Sbjct: 159 RITAEVMRHYEERLQAYQSVDFDDLIGMPLRLLHDFPE---VRAKWQAALGHILVDEYQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+EV+++L  D               AVGD+ QSIY + GA    + +        
Sbjct: 216 TNATQYEVLKALAGD----------RARFTAVGDDDQSIYGWRGATLDNLKKLPIDYPT- 264

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST+ IL   + V                              
Sbjct: 265 -------LKVIKLEQNYRSTSAILRAANNVIGPNPK------------------------ 293

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             L+ + +     +  P +              +    A R    I ++   D +    +
Sbjct: 294 --LFPKTLFSELGEGEPVRVV---------DADTELHEAERAVARIVSLRAGDAVTQGAQ 342

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +  + +D  +L R      ++    R      +I    +      D   IKDL    R 
Sbjct: 343 HK--EFRDFAILYRANHQARILEQALR----RAQIPYKVSGGQSFFDRAEIKDLCGWFRL 396

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
            ++ +DD +F+  + +P        +  +         +++  +             +  
Sbjct: 397 WVNNDDDPAFLRAITTPKRGIGHTTLASLGTFASQYKLSLFAALFSPSLPSVIPKRTLDG 456

Query: 481 FQHVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFI-----SRFGNEVIDVLDE 531
                +YI++L + A+     +    F    L      +                + + E
Sbjct: 457 VHEFGRYINDLEYRARRTMGAEASRTFMLDWLKEIDYERHLYEGEESEAAAATRWNNVLE 516

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPT---------------IKRAHSANHNEVRIMT 576
           F+++  +    S           +                           + N V + T
Sbjct: 517 FVDWMSQRAGGSLDDASGANDNDDSGETERKSLLEVAQTISLLSTISEREQDQNVVTLST 576

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE P V L+     +                               +N    ++
Sbjct: 577 LHASKGLEWPHVVLIGVTEGMLPF------------------------KLDDDNGRQKVV 612

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                   +E  RL+YVG+TRA   L +         +          + +   +    K
Sbjct: 613 SDETTQRLQEERRLMYVGITRAQRTLAVSWTKKRKQGRDMVPCQPSRFIAEMGLDKTTTK 672

Query: 697 KIKLT 701
           +    
Sbjct: 673 EDPRE 677


>gi|313827476|gb|EFS65190.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL063PA2]
 gi|315109407|gb|EFT81383.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL030PA2]
          Length = 1078

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 124/868 (14%), Positives = 246/868 (28%), Gaps = 140/868 (16%)

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A  +        K   V  F+DLI +    L+           +      +++DE QDT 
Sbjct: 205  ALSVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTD 264

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +QWE++R                  L+ +GD KQSIY+F GA+        +       
Sbjct: 265  PLQWEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ------- 307

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGT 307
                   ++ L +++R+   I+  V+ +FS  +    +S +  +      R       G 
Sbjct: 308  ---SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHDISMELVTAHHQESRIKTAATDGP 364

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               W Q       Q     +  T+  D    E         +   I  + G   +     
Sbjct: 365  RYHWSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDG 417

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LVR R+    +               V +    +    A +DL+ L   
Sbjct: 418  LRPLRPTDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLITLLEA 473

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D+     +  S L   +  D+    ++      +              +  V   
Sbjct: 474  LEN-TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAA 532

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +H                 ++    G +             +             + ++ 
Sbjct: 533  LHR----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATA 577

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    
Sbjct: 578  AWIREQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPI 637

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +     D     + I    +  +I    I+  ++  + E  RLLYV +TRA   + +   
Sbjct: 638  VWH---DGQRRVLDISSQGTDRSI---AIESHEEDERGENLRLLYVALTRARSAVRLWWS 691

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +     +  +V       E    +  T+        +   +T           
Sbjct: 692  PCP---LRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPWLNSGPIATVIAPANQKLLT 748

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYI------LNPSTIDTKGKTNLESLLSDNQ--- 778
             ++        +P+ L  P+               L+ +  +      ++  + D     
Sbjct: 749  RSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDD 808

Query: 779  ----------TFNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLS 827
                        + G ++H +L+ I T         +  +         P      L  S
Sbjct: 809  TAPGLCGLPGGTSFGTLVHTVLEYIDTAAIDLSSEVLSITRRALRMSPLPDVPPSELATS 868

Query: 828  ITRLLENPM--------MTTAMSCDSYSEVSVSGKIN----------------------- 856
            + ++L + +        +      D  +E++    +                        
Sbjct: 869  LEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPP 928

Query: 857  -------------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQEI----- 893
                          P  D  + G     ID +         + +YKT+            
Sbjct: 929  DDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHM 988

Query: 894  --------EHIPYTHIAQLSIYEKILKD 913
                          +  Q  +Y   L  
Sbjct: 989  YDAHTMRTMMFSSHYPLQGLLYSAALHR 1016


>gi|187479679|ref|YP_787704.1| ATP-dependent DNA helicase [Bordetella avium 197N]
 gi|115424266|emb|CAJ50819.1| ATP-dependent DNA helicase [Bordetella avium 197N]
          Length = 684

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 100/649 (15%), Positives = 202/649 (31%), Gaps = 121/649 (18%)

Query: 39  METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE 98
           +  G       A  ++   +           S           ++++      +  +++ 
Sbjct: 83  LAKGLTISTFHALGVRLLREEAVHAGLKPQFSILDADDAMAIIQDLLATTDRGRLREVQS 142

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            +   ++  ++  D            A       +   Y         +DF+DLI     
Sbjct: 143 IISLWKNALLEPDDAAKVAVTPGEVEAV-----AVYRSYAATLAAYQAVDFDDLIRIPAK 197

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL+  +    +R +    + ++L+DE QDT++ Q+ +++ LT           +     A
Sbjct: 198 LLEDNEA---VRTRWQNRVRYLLVDEYQDTNVCQYRLVQLLTG----------TRSMFTA 244

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD+ Q+IY++ GA  + + +                 +I+L  ++RS   IL   + V 
Sbjct: 245 VGDDDQAIYAWRGATIENLAKLTTDYPN--------LKLIKLEQNYRSVQRILAAANNVI 296

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                                          LW  + +      +P              
Sbjct: 297 ERNPKLFEKK---------------------LWSDLGAGEPITVSP-------------- 321

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  IA  IS          +  +R  Q KD  +L R    + ++    R LK 
Sbjct: 322 MDGEEHEAESIAMKISA---------SRFERQAQWKDFAILYRSNHQSRVLEQALRNLK- 371

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-C 457
              I    +      D   ++D++A  R + + +DD +F+    +P     +  +  +  
Sbjct: 372 ---IPYTISGGQSFFDKAEVRDVLAYLRLVANDDDDPAFIRAATTPKRGIGQATLQTLGQ 428

Query: 458 TQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCS------------ 499
                  ++ E   +           +   +   ++I  +   A   +            
Sbjct: 429 YAAQRAISLLEASAEEGLEALLQPRQLEPLRTFGEFIRRIQWRAGRSAEGAATRAAEPAG 488

Query: 500 --PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
               D  + I   +        R        + E + +  R       +L EL+  +   
Sbjct: 489 PLLDDLMSAIDYERFLFDSLEERPAQNRWQNVLELMAWLKRKADEDGMTLFELVQHVALV 548

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
               +       + V++ T+H +KGLE P V+LV     +  H    +    P  N+   
Sbjct: 549 TMLERGE-DEEPDAVKLSTLHASKGLEYPHVYLVGVEEGLLPHVGRDEEDTDPDANN--- 604

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                   +  +E  RL+YVG+TRA   L +  
Sbjct: 605 ----------------------LATRIQEERRLMYVGITRAQRSLHLSW 631


>gi|330826797|ref|YP_004390100.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
 gi|329312169|gb|AEB86584.1| UvrD/REP helicase [Alicycliphilus denitrificans K601]
          Length = 686

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 98/597 (16%), Positives = 181/597 (30%), Gaps = 119/597 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YEE       +DF+DLI     LL+       +R K  + + H+L+DE QDT+ 
Sbjct: 162 ALIMQRYEERLSAYQSVDFDDLIGMPMRLLRHHPE---VREKWQRLLGHVLVDEYQDTNA 218

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  +               AVGD+ QSIY + GA    + +  +   +    
Sbjct: 219 TQYELLKYLVGE----------RARFTAVGDDDQSIYGWRGATLDNLKKLPQDFPQ---- 264

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST+ IL   + V  +                             L
Sbjct: 265 ----LKVIKLEQNYRSTSAILRAANNVIGLNPK--------------------------L 294

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           + + +     +  P +              +    A R    I  +              
Sbjct: 295 FPKTLFSELGEGEPVRVV---------DCDNEEHEAERAVARIQGLRA-------ASNPP 338

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  +L R            R       I    +      D   IKDL A  R  ++
Sbjct: 339 PAWKDFAILYRANHQAKPFEKALR----KANIPYKVSGGTSFFDRAEIKDLCAWFRLWIN 394

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQH 483
            +DD +F+  + SP        +  +        ++++  +            G+     
Sbjct: 395 NDDDPAFLRAVTSPRRGVGHTTLGALGEFATQHKQSMFGALFNAMLPAVIPKRGLEGLLE 454

Query: 484 VIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLN 534
             + I++L H A+     +    F    L      Q       +E         + EF +
Sbjct: 455 FGRTINDLEHRARHTHGAENARAFLADWLKEIGYEQHLYDGEDSEKVAAARWSNVLEFCD 514

Query: 535 FTLRNE----------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
           +  +            Q+   SL E+   +               + V + T+H +KGLE
Sbjct: 515 WMAQRAGGQVEEGTGLQSETKSLLEVAQTIALLS--TISEREQEQDMVVLSTLHASKGLE 572

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            P V L      +                               +      +     +  
Sbjct: 573 WPHVILAGVTEGMLPF------------------------KLDDDEGRQQKVADDVAARL 608

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           +E  RL+YVG+TRA   L +         ++         + +   +    ++    
Sbjct: 609 QEERRLMYVGITRAQRTLAVSWTKKRKKGREMVACQPSRFIAEMKLDAATARENPRD 665


>gi|312128494|ref|YP_003993368.1| uvrd/rep helicase [Caldicellulosiruptor hydrothermalis 108]
 gi|311778513|gb|ADQ07999.1| UvrD/REP helicase [Caldicellulosiruptor hydrothermalis 108]
          Length = 969

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 130/828 (15%), Positives = 293/828 (35%), Gaps = 125/828 (15%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           L ++ ++  T +LL   +V+  I         ++++DE QD++ +Q  +  ++ E     
Sbjct: 200 LTYDLVLQRTFELLNIPEVNKDI----KTRFKYLIVDEFQDSNFLQKSIFENIAE----- 250

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    ++ +GD+KQSIY F GAEP+                     ++EL  +FR+
Sbjct: 251 --------NIYYIGDKKQSIYRFQGAEPEVFDE----------AIENCSQVLELCENFRT 292

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            ++       +    +    +   +   + ++    G +  V++                
Sbjct: 293 NSE-------LGKKIDKVASILFPNYKPLSYKHQADGFLKIVEIV--------------- 330

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRK 384
                   +  +E      A  +A  I  M+      S G   +R ++  D  VL RK  
Sbjct: 331 --------NETKEDIIRNEAIYVAKKIKEMVEDGVKISVGGKPERRLKYSDFAVLSRK-- 380

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
               I  + + +  DY+I +  N +  L++   I  L+     +        ++ +L + 
Sbjct: 381 -IQNIAHIYKKVFEDYEIPLDINFKRGLSEQKEIVPLLGFLEILQYPNKKSGYLRLLAND 439

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
           +F      +            ++  + K           V+K+I +           +  
Sbjct: 440 IFKVDRFTL------------LFCEMSKIECYVPE---DVLKFIAKQRDNLFVKKISEIL 484

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                  +   +    FG    + +  F +     E+++  SL++L++ +      +   
Sbjct: 485 YEFEDMFEYSYKVYKYFGKAAYENVRLFYDLA---EESNSFSLEDLLNFINNQGEKMSGY 541

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGS--QVFSHKHIKKMHIMPSLNDDPGIPIWI 622
            + + + V ++++H+AKGL  P+VFLV        FS +  K      +   +  I  + 
Sbjct: 542 SALD-DSVVLISIHSAKGLSFPIVFLVGLCESTGYFSGRSPKLRGSYDTSTKEYIIAPFW 600

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQRTW 681
            +        + +    K+  +EE  RL YV +TR    L +       + +K+   +++
Sbjct: 601 MEK-----EYTRIKNISKQQEKEELKRLFYVALTRPMAGLFMINSTVKEAIKKRGGAKSF 655

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
            + +  ++   +          I K+     E      +         I   +    +P 
Sbjct: 656 GEEIGFNYILTKAE-----EIGIEKEVVRIKEAEKTSQDFDSSSENNNISYALPSIILPD 710

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-----------------DNQTFNRGL 784
           +         N   IL+PS I    +      L                         G 
Sbjct: 711 EF-------ENRFKILSPSHIMDFKRCPAMFSLKYIMGLPVFDEQSSKEEIQQNAKALGT 763

Query: 785 IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
            +H++L+ +  + +    N + S  +        ++ + +   +    ++  +       
Sbjct: 764 TVHRVLE-LTKIKDIDDINNLESNISLAVLENDFEDKELVRKLVFNFFKSSFIREIKGKV 822

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
              E     +        +I G ID++   +  IF+ ++KT+ +   +      ++I QL
Sbjct: 823 IKEES--ELRFYYKLGSQMIYGIIDKVYHLENKIFLIDFKTNLNFDDKK---FESYIPQL 877

Query: 905 SIYEKILKDSYPNKSLVCLLIYVSEPKVFI-IPQNKLNKAFAEISTKI 951
            IY + ++   P K ++  + ++ E K F  IP+ +  +   E+  +I
Sbjct: 878 CIYTQAIRQREPQKDIMSSIFWLREGKSFDYIPETEHIEEVKEVIGRI 925


>gi|167762884|ref|ZP_02435011.1| hypothetical protein BACSTE_01248 [Bacteroides stercoris ATCC 43183]
 gi|167699224|gb|EDS15803.1| hypothetical protein BACSTE_01248 [Bacteroides stercoris ATCC 43183]
          Length = 1151

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 120/871 (13%), Positives = 269/871 (30%), Gaps = 97/871 (11%)

Query: 100  LKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L +  + F   ++R  N+ ++    L  L L  +++       +++       L+ +TN 
Sbjct: 340  LLQDAERFRPQKNRTINSCRLSLQHLNKLQLLNHIDEEVRTLNREHNRF----LLSDTNA 395

Query: 159  LLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            LL        S+++  KI   I +++IDE QDTS +QW+  R L  +             
Sbjct: 396  LLHKLVHEGDSSFVFEKIGANIRNVMIDEFQDTSRMQWDNFRLLLLEGLS------QGAD 449

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRI--------------------NQKRATNAGQ-- 253
               VGD KQSIY +   +   +                             +  +     
Sbjct: 450  SLIVGDVKQSIYRWRNGDWGILNSLGSDQSKVPLCDAKVPLYDAEVPLYDAKPLHCESGV 509

Query: 254  ------KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     +  L  + RS  +++   +++F+   +                 +      
Sbjct: 510  QLPFPFPVRVETLKTNRRSETNVIHFNNRLFTAAVDYLNALHLEELKEECIPLKRAYA-- 567

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                   V+Q   +   +     S+ +   +++        +   +  ++          
Sbjct: 568  ------DVAQESPKTENKGYVKVSFLEPDEEQNYTEKTLSAMGEEVQRLLSEG------- 614

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               ++  DI +LVRK K+ P I         +  + VV ++ F L   LAI  L+   R+
Sbjct: 615  ---VKLNDITILVRKNKNIPPIADYFD---KELHLPVVSDEAFRLDASLAICMLIDALRY 668

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF-QHVIK 486
            + + E+ ++   ++ +     +                  ++ +       +      + 
Sbjct: 669  LSNPEEKIARASLITNYSLQITGK-----GEAEAPLAAPADWHKLLTADARTALPAEFVA 723

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
             + EL         ++    +          + R G +    L  F +      QN+ S 
Sbjct: 724  RMDELR----LMPLYELLEELFTLFD-----MGRIGKQ-DAYLFSFFDAVTEYLQNNSSD 773

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH--KHIK 604
            L   I   ++     K   S   + +RI ++H +KGLE   V +     ++ +     + 
Sbjct: 774  LDGFIRYWDET-LCNKTIPSGEMDGIRIFSIHKSKGLEFHTVLIPFCDWKLENETYNQLV 832

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                  +  +   +      S    ++      + +     +   LLYV  TRA   LI+
Sbjct: 833  WCTAPEAPYNAIDLVPVNYSSTMAESVYRQDYLNERLQLWVDNLNLLYVAFTRAGKNLIV 892

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                +               V  +       +     +        A        ++   
Sbjct: 893  WSRKDQKGTMSELLSAALPQVAKAEEGGWDEEGSIYESGAVYPSEEALLHCVRKGKDKDA 952

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
            +  +   + +++              +        S         ++   S  +  NRG 
Sbjct: 953  DTPDGKNRTVNKLAQKPVKLPVHTESMRHDIEFRQSNRSADFIAGVDEAESGRRFINRGR 1012

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
            ++H L   I T  E    + +         +  A+  + +     +    P +    S  
Sbjct: 1013 LLHTLFSAIET--EADIDDAVNRLV-FEGIIGRAETEEEIRELTRKAFAQPQIKDWYSGT 1069

Query: 845  SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
                +     I   +   + + R D++ +    I + ++K               +  Q+
Sbjct: 1070 WQ--LFNECDIIWQENGELRNRRPDRVMMRDGAIVVVDFKFGKPN--------KKYNKQV 1119

Query: 905  SIYEKILKDS-YPNKSLVCLLIYVSEPKVFI 934
              Y ++L    Y   ++   L YV E ++  
Sbjct: 1120 QGYMELLVRMGYDANAISGYLWYVEE-EIIE 1149


>gi|289425055|ref|ZP_06426832.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes SK187]
 gi|289428108|ref|ZP_06429811.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes J165]
 gi|289154033|gb|EFD02721.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes SK187]
 gi|289158708|gb|EFD06909.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes J165]
 gi|313764138|gb|EFS35502.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL013PA1]
 gi|313801688|gb|EFS42928.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL110PA2]
 gi|313807180|gb|EFS45673.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL087PA2]
 gi|313812637|gb|EFS50351.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL025PA1]
 gi|313816231|gb|EFS53945.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL059PA1]
 gi|313820638|gb|EFS58352.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL036PA1]
 gi|313822557|gb|EFS60271.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL036PA2]
 gi|313825509|gb|EFS63223.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL063PA1]
 gi|313838402|gb|EFS76116.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL086PA1]
 gi|314914868|gb|EFS78699.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL005PA4]
 gi|314924882|gb|EFS88713.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL036PA3]
 gi|314929979|gb|EFS93810.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL067PA1]
 gi|314956485|gb|EFT00773.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL027PA1]
 gi|314957329|gb|EFT01432.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL002PA1]
 gi|314962483|gb|EFT06583.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL082PA1]
 gi|314967652|gb|EFT11751.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL037PA1]
 gi|314978135|gb|EFT22229.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL072PA2]
 gi|314986293|gb|EFT30385.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL005PA2]
 gi|314989620|gb|EFT33711.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL005PA3]
 gi|315077699|gb|EFT49750.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL053PA2]
 gi|315080861|gb|EFT52837.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL078PA1]
 gi|315084657|gb|EFT56633.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL027PA2]
 gi|315088598|gb|EFT60574.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL072PA1]
 gi|315098845|gb|EFT70821.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL059PA2]
 gi|315101556|gb|EFT73532.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL046PA1]
 gi|327327128|gb|EGE68907.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
            HL096PA3]
 gi|327443753|gb|EGE90407.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL013PA2]
 gi|327452209|gb|EGE98863.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL087PA3]
 gi|327452692|gb|EGE99346.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL083PA2]
 gi|327453450|gb|EGF00105.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL092PA1]
 gi|328753885|gb|EGF67501.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL087PA1]
 gi|328754853|gb|EGF68469.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL020PA1]
          Length = 1078

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 124/868 (14%), Positives = 246/868 (28%), Gaps = 140/868 (16%)

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A  +        K   V  F+DLI +    L+           +      +++DE QDT 
Sbjct: 205  ALSVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTD 264

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +QWE++R                  L+ +GD KQSIY+F GA+        +       
Sbjct: 265  PLQWEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ------- 307

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGT 307
                   ++ L +++R+   I+  V+ +FS  +    +S +  +      R       G 
Sbjct: 308  ---SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHDISMELVTAHHQESRIKTAATDGP 364

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               W Q       Q     +  T+  D    E         +   I  + G   +     
Sbjct: 365  RYHWSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDG 417

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LVR R+    +               V +    +    A +DL+ L   
Sbjct: 418  LRPLRPTDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLITLLEA 473

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D+     +  S L   +  D+    ++      +              +  V   
Sbjct: 474  LEN-TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAA 532

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +H                 ++    G +             +             + ++ 
Sbjct: 533  LHR----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATA 577

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    
Sbjct: 578  AWIREQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPI 637

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +     D     + I    +  +I    I+  ++  + E  RLLYV +TRA   + +   
Sbjct: 638  VWH---DGQRRVLDISSQGTDRSI---AIESHEEDERGENLRLLYVALTRARSAVRLWWS 691

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +     +  +V       E    +  T+        +   +T           
Sbjct: 692  PCP---LRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPWLNSGPIATVIAPANQKLLT 748

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYI------LNPSTIDTKGKTNLESLLSDNQ--- 778
             ++        +P+ L  P+               L+ +  +      ++  + D     
Sbjct: 749  RSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDD 808

Query: 779  ----------TFNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLS 827
                        + G ++H +L+ I T         +  +         P      L  S
Sbjct: 809  TAPGLCGLPGGTSFGTLVHTVLEYIDTAAIDLSSEVLSITRRALRMSPLPDVPPSELATS 868

Query: 828  ITRLLENPM--------MTTAMSCDSYSEVSVSGKIN----------------------- 856
            + ++L + +        +      D  +E++    +                        
Sbjct: 869  LEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPP 928

Query: 857  -------------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQEI----- 893
                          P  D  + G     ID +         + +YKT+            
Sbjct: 929  DDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHM 988

Query: 894  --------EHIPYTHIAQLSIYEKILKD 913
                          +  Q  +Y   L  
Sbjct: 989  YDAHTMRTMMFSSHYPLQGLLYSAALHR 1016


>gi|58040813|ref|YP_192777.1| DNA helicase II [Gluconobacter oxydans 621H]
 gi|58003227|gb|AAW62121.1| DNA helicase II [Gluconobacter oxydans 621H]
          Length = 740

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 106/621 (17%), Positives = 183/621 (29%), Gaps = 115/621 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y+E        DF DL+++  ++L+ +     +  +  +   +IL+DE QDT+
Sbjct: 178 ALAIYRAYQERLIALNTCDFGDLMLHMTEILRNQP---NVLAQYHRIFRYILVDEYQDTN 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+  +R L +           P  +  VGD+ QSIYS+ GAE + +LR ++       
Sbjct: 235 TVQYLWLRLLAK-------REHGPSNIACVGDDDQSIYSWRGAEVENILRFEKDFP---- 283

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RSTA IL     + +  E   G +         R  R    G   
Sbjct: 284 ----GAEVVRLERNYRSTAQILAAAAGLIAHNEGRLGKT--------LRPGRDDAQGEKV 331

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V    +                          AR +   I  + G           
Sbjct: 332 QIIGVRDSDE-------------------------EARIVGGAIERLRGDGHPL------ 360

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                +I +L+R    T               I           +   I+D +A  R + 
Sbjct: 361 ----SEIAILMRAGFQTRPFEERL----MMIGIPYRVVGGLRFYERSEIRDCLAYLRVLS 412

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY---IQKFANCGISKFQHVIK 486
              DDL+F  ++  P        + K+  Q              Q        K +  + 
Sbjct: 413 QPADDLAFERIINVPKRGVGAVAVQKLHAQARALPGPLTAAVIWQLQEGLLKGKSKDALD 472

Query: 487 YIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
            +      A+     +        +L      Q +      E    +D + E L      
Sbjct: 473 GLMAAFQRAKATFETEGHVVAAEQLLEDSGYLQMWRDDRSVEAPGRLDNIRELLRALGEF 532

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                     L   LE     +      + ++V +MT+H AKGLE   VFL      VF 
Sbjct: 533 GT--------LQGFLEHVALVMDTESETSDDKVSLMTLHGAKGLEFDTVFLPGWEEGVFP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                                           EE  RL YVG+TRA 
Sbjct: 585 SQRSLD--------------------------------EGGNRALEEERRLAYVGLTRAR 612

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            + I+   ++               + +      ++               +   S    
Sbjct: 613 RRAIVLHAASRRIYANWQSSMPSRFIEEIPSEYVQLTGQAFETRRQAAAAPSMFASGPLT 672

Query: 720 ENTPLEREETIKQLMDEQKIP 740
              P        ++ D +  P
Sbjct: 673 STRPSGFRAPRPKIHDVKPEP 693


>gi|296130310|ref|YP_003637560.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
 gi|296022125|gb|ADG75361.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
          Length = 1162

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 133/1093 (12%), Positives = 262/1093 (23%), Gaps = 230/1093 (21%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R G+             W L    V      +  +  T   T+++    L  A     ++
Sbjct: 140  RLGVEPGARLLG-EAAQWQLASQVVESWAGDLETAAAT--STVVEAVLALSGALDEHLLD 196

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
               +                   Q I      L      +         R     + +  
Sbjct: 197  PSLAR------------------QGIESLVASLLATPAGTPPRAPYAEVRKLVASLGERA 238

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                     L A Y   K+    LDF D +     + +       +     +    +L+D
Sbjct: 239  RVL-----DLVADYRARKRTADSLDFGDQVALAARIARD---VPEVGAAERERFRVVLLD 290

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS  Q  ++++L           ++   + AVGD  QSIY + GA P  + R    
Sbjct: 291  EYQDTSYAQLVLLQALF----------TAGHPVTAVGDPHQSIYGWRGASPGGLARFPGA 340

Query: 244  NQ-----KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                          +   ++ L  S+R+   IL   + V +                R  
Sbjct: 341  FPVVEKGPDGRERRRPADVVPLSTSWRNDIAILDAANAVAAPLRTGGA----RVDVPRLA 396

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                   G VQ       + +                          A  +A  ++    
Sbjct: 397  PRPGAGDGLVQALVAQTVEDE--------------------------ADAVAAWVARWWR 430

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                          A+   VL RKR     +    R       + V       L     +
Sbjct: 431  PA-------HHPAGARTAAVLCRKRSQFEPLRRALRA----AGLPVEVVGLGGLLATPEV 479

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--------------- 463
             DL+A+ +         + V +L          D+  +     +                
Sbjct: 480  VDLVAVLQAAHDPTRGDAVVRLLTGARTRLGASDLHALGEWARQGARPTGRPGGAPGVEA 539

Query: 464  ------------------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
                                     +     G  +   +   +  +    Q  S  +   
Sbjct: 540  DVVDERSLVDALDAPPPPGWRSPSGRTVTPEGRRRLLDLAAVLRAVRAH-QGLSLPELVG 598

Query: 506  LILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI 561
                      +  +R           LD   +      +     +L   ++ LE      
Sbjct: 599  EAERLFGLDIEVQARADVTPGRARAHLDALADVAAEFARGADRPTLGAFLAWLEAADARE 658

Query: 562  KRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK--------------HI 603
                      + + V++ TVH AKGLE   V +                           
Sbjct: 659  DGLELPVTEPDPDAVQVTTVHAAKGLEWDAVVVAGMVDGGLPATAMLGKDGPKDSAWLTG 718

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK----KSTQEEYNRLLYVGMTRAS 659
              +   P   D   +P            +++ ++  +         E  RL YV +TRA 
Sbjct: 719  LGVLPYPLRGDADDLPRLECAGAESPKELAERLERFRLDAGDHEVAEERRLAYVALTRAR 778

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            + L++        +       +   + D+      V               A    T   
Sbjct: 779  EALLLTAAYWGDAKAPRQASPFLTDLMDA--GLAEVVGRAEEPDPKASNPRAALTPTAQW 836

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDI---------------------------- 751
               P  R+    +          + + +                                
Sbjct: 837  PADPFARDGAAPRRDAVTAAAVAVTAAMAELAASGTGPDEGEIGTDPHDTGAGATGSASH 896

Query: 752  -------------NEPYILNPSTIDTKGKTNLESLLSDNQTFNRG-------------LI 785
                           P   +P           + LL++     RG              +
Sbjct: 897  DTGAGATGAAASDRPPTPGSPVGDREDWDALADRLLAEQAARRRGDGRVALPAHLSASSL 956

Query: 786  IHKLLQ------VI------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL- 832
            +    Q       +         P+ +R     ++           +  +L  +   +L 
Sbjct: 957  VRLAAQPEQFALHLRRPVPREPSPQARRGTAFHAWVEAWYGRAALVDVDDLPGADDDVLP 1016

Query: 833  ENP---MMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRIDQISISQQN------IFI 880
            ++P    +  A         + V+V   +       ++  RID +            + +
Sbjct: 1017 DDPGQVELRAAFLRTPWAHRAPVAVEVDVETTVGGYVLRSRIDAVFSDPDRPGVPGAVVV 1076

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQN 938
             ++KT    P++          QL++Y              +     YV+     +    
Sbjct: 1077 VDWKTGA-PPRDPAERASR-DLQLAVYRLAWARLSGTDPDLVRAAFCYVASGATVVPEHL 1134

Query: 939  KLNKAFAEISTKI 951
               +  A +    
Sbjct: 1135 PGEEEVARLLAAA 1147


>gi|33864717|ref|NP_896276.1| UvrD/REP helicase [Synechococcus sp. WH 8102]
 gi|33632240|emb|CAE06696.1| UvrD/REP helicase [Synechococcus sp. WH 8102]
          Length = 797

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 105/630 (16%), Positives = 207/630 (32%), Gaps = 99/630 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y  A   N      D        ++    +  +R    +   H+L+DE QD
Sbjct: 202 KLTANVYRRYRRALAANNA---LDFDDLLLLPVQLLQQNEQVRSYWHRRFAHVLVDEYQD 258

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+++I+ L  D    +  ++ S R++F VGD  QSIYSF  A+   ++  +     
Sbjct: 259 TNRTQYDLIKLLVTDGKDPQTYNNWSGRSVFVVGDADQSIYSFRAADFTILMGFQEDFGD 318

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +A +   + ++++L  ++RSTA IL   + + +            T              
Sbjct: 319 QAPDDATR-TMVKLEENYRSTATILAAANALIANNSERIDKVLRPTR------------- 364

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                           + +  + T   D + +       A  + + +  M          
Sbjct: 365 ---------------GDGELITLTRCDDEIAE-------AEAVVHRLRTM--------EA 394

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ VL R    +  I          + I  +        D   IKDL+A  R
Sbjct: 395 ANPELSWGDMAVLYRTNAQSRSIEESL----VRWGIPYIVVGGLRFYDRREIKDLLAYLR 450

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVY------EYIQKFANCGIS 479
            +++  D +S + ++  P     +  I ++    ++    ++      E ++        
Sbjct: 451 LLVNPADTVSLLRVINVPKRGIGKTTIQRLTDAANQLGIPLWDVVSDAEAVRSLGGRSAR 510

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFT 536
                 + +H+L    Q  +P +    ++       + I+   +E  +    L E +N  
Sbjct: 511 GLLQFCELLHDLRRQVQEVAPSELIQQVMEKSGYISELIAEGTDEAEERRRNLQELVNAA 570

Query: 537 LRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           L+  E+N    L+  ++          +      + V +MT+H++KGLE PVV LV    
Sbjct: 571 LQYQEENEEGDLEGFLATAALSSDADSKD--TAADRVTLMTLHSSKGLEFPVVCLVGLEQ 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                           ++ EE  RL YVG+
Sbjct: 629 GLFPSYRSLDDP----------------------------------ASLEEERRLCYVGI 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA ++L +   S         +     +             +  +           E  
Sbjct: 655 TRAKERLFLSHASERRLWGGMREAAVPSVFLSELPEALVQGDLPQSGGAALRRERRLERL 714

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFS 745
           T    + P        +       P + +S
Sbjct: 715 TRVDRDRPSSAPANAVRRRQAGPAPGRSWS 744


>gi|121612511|ref|YP_001000779.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005695|ref|ZP_02271453.1| ATP-dependent DNA helicase, UvrD/REP family protein [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|87249211|gb|EAQ72172.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 691

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 195/539 (36%), Gaps = 92/539 (17%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKL---KKSQDEFIKIRDRFNTYKMF--KSTLASLTLA 130
                 K++I  +      D+ + +   K        + +  N  K    +        A
Sbjct: 114 DTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKEHNFEKYQNEYKFA 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ 
Sbjct: 174 N-YYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNT 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +     
Sbjct: 230 LQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN---- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS   IL   + + S  E   G +                      
Sbjct: 276 ----VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKT---------------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++   +     ++     + L            IA  +  ++ +           
Sbjct: 310 --LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKLLNSG---------- 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++AK+I +L R    +  I           +IS          + L IKDL++  R IL+
Sbjct: 347 VEAKEIAILFRVNALSRAIEEAF----MKKQISYKLLSGMRFYERLEIKDLISYLRLILN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKF 481
             DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++ 
Sbjct: 403 PSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQNEA 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I+ IH L          D    +   K    +     G+E I  LDEF        +
Sbjct: 463 NIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIRNLDEFYANLREKLK 520

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL++L+SE+                 V +M++H +KGLE   VF++      F 
Sbjct: 521 EDPEASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFP 575


>gi|24213666|ref|NP_711147.1| exodeoxyribonuclease V subunit beta [Leptospira interrogans serovar
           Lai str. 56601]
 gi|24194474|gb|AAN48165.1| exodeoxyribonuclease V beta chain [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 1046

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 126/845 (14%), Positives = 273/845 (32%), Gaps = 107/845 (12%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           +L +A  +   +    K +  + ++ +I+ T D L+       +R  +       ++DE 
Sbjct: 184 ALIIADMVLKEF----KTSEWMSYDQMILKTRDSLENP----RLRKALQSRYRVGILDEF 235

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT   Q+E+ + L  +        +  R L+ +GD KQSIY F GA+    L+ K   +
Sbjct: 236 QDTDGAQYEIFKRLFLES-------NDDRALYLIGDPKQSIYGFRGADIGIYLQAKEELK 288

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           K       K   I L +++RS  +++   +++F      Q        +I  +   +   
Sbjct: 289 KH------KAEEISLNVNYRSVPELIRAYNEIFGGKSGKQSFFPILEQSIPIQYEPVFAP 342

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                  +V+     +  P Q    +  D    + + +   + I+  I  +I  +  F+ 
Sbjct: 343 KE---NIKVLLSDKQKQGPIQIVRFTGKDFWNTQDAKNAWGQFISEEILKLIHKEDPFTY 399

Query: 366 G--------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                     ++ ++ ++I VLV+ + +  L     +       I      +  +     
Sbjct: 400 QVAEGDLYYVEKKLKLREIAVLVKSKSEGKLAEQFLK----LRGIPCSFYKQEGIYQSAE 455

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
              +  +   +L      S+  +L   LF      +        ++       +      
Sbjct: 456 SYQISNIFECLLDPNKPSSYRKLLLGDLFQIHPAHLPYFDEHSIDSYEKSILDRWKTLSM 515

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             KF  + + I E   I       D        +   +Q   R     I           
Sbjct: 516 DRKFSELFRSIEEDSRIFLTEDATDIDWE--RKRTNYRQIFRRLLQFQIAN--------Q 565

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            + +     L+ L    +              + V+I+T+H +KGLE PVVFL +     
Sbjct: 566 ADLEEILEELKLLQKSFKNEEELPLFEKETEKDAVQILTLHASKGLEWPVVFLFNLSGDY 625

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                           D  G   W               +     +  E  RLLYVG+TR
Sbjct: 626 IP------EVYDYPFVDKDGKLSWKLSLWDNEEEKKISKEIYSNQSLNENKRLLYVGITR 679

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           +  ++ +  ++  +N K  +   +  +        E      L + ++   W    + + 
Sbjct: 680 SKVRIYLPFYTPLNNWKTRDSAYYKILYPRLQSILENEIDTDLFHVVS---WAPTPFDST 736

Query: 718 HPENTPLEREETI-------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
            P+      +  I       ++    + I    +S ++  +N    ++ S ++ K +   
Sbjct: 737 DPKRIDWNLDSEICFTPLLYEEPETSKTIRLNSYSSLRTSMNFSEEVSLSVLEEKTRIQS 796

Query: 771 ESLLSDNQ--------TFNRGLIIHKLLQVIFT--LPEHKRKNFIT-------------- 806
           + + +           + + G  +H LL+ +          K  +               
Sbjct: 797 DDVENSETVIKDALPSSASIGSFLHSLLEELDFSIFKTTTSKELLKNEKIISRMDFHLDY 856

Query: 807 -SYCTKNAKLWP---AKEYKNLLLSITRLLEN---------PMMTTAMSCDSYSEVSVSG 853
                +             K  +  +  LL             +      +  SE+    
Sbjct: 857 FRILKREEGRPILEKETVQKRTVEILWNLLNANILDQKGALFRLVDLPKENRVSEMDFYL 916

Query: 854 KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP-------QEIEHIPYTHIAQLSI 906
            ++    +  + G ID +       ++ +YK++           + +E++   +  Q  I
Sbjct: 917 DLDTNPGN-FLRGSIDLVFQIDDKFYLADYKSNLLEDYSTISLKRNVENLESRYDLQRDI 975

Query: 907 YEKIL 911
           Y  +L
Sbjct: 976 YALVL 980


>gi|218562715|ref|YP_002344494.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|112360421|emb|CAL35218.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC
           11168]
          Length = 691

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 195/539 (36%), Gaps = 92/539 (17%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKL---KKSQDEFIKIRDRFNTYKMF--KSTLASLTLA 130
                 K++I  +      D+ + +   K        + +  N  K    +        A
Sbjct: 114 DTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKEHNFEKYQNEYKFA 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ 
Sbjct: 174 N-YYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNT 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +     
Sbjct: 230 LQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN---- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS   IL   + + S  E   G +                      
Sbjct: 276 ----VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKT---------------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++   +     ++     + L            IA  +  ++ +           
Sbjct: 310 --LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKLLNSG---------- 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++AK+I +L R    +  I           +IS          + L IKDL++  R IL+
Sbjct: 347 VEAKEIAILFRVNALSRAIEEAF----MKKQISYKLLSGMRFYERLEIKDLISYLRLILN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKF 481
             DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++ 
Sbjct: 403 PSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQNEA 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I+ IH L          D    +   K    +     G+E I  LDEF        +
Sbjct: 463 NIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIRNLDEFYANLREKLK 520

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL++L+SE+                 V +M++H +KGLE   VF++      F 
Sbjct: 521 EDPEASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFP 575


>gi|302870989|ref|YP_003839625.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
 gi|302573848|gb|ADL41639.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47]
          Length = 955

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 141/876 (16%), Positives = 294/876 (33%), Gaps = 117/876 (13%)

Query: 93  SPDLKEKLKKSQDEFIK--------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            P    KL + +    +         ++  N+ K    T    +   Y+  H  +     
Sbjct: 125 FPATLGKLPQERFFIEEYFHFAESIAQEYSNSAKYVGKTCHLESETFYIFEHLSDRLNDQ 184

Query: 145 CV--LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +  L ++ ++  T +LL   +V+  +          +++DE QD++ +Q  +  ++ E 
Sbjct: 185 FLKELTYDLVLQRTFELLSVPEVNRDV----KNRFKFLIVDEFQDSNFLQKSIFENIAE- 239

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        ++ VGD+KQSIY F GAEP+                     ++EL  
Sbjct: 240 ------------NIYYVGDKKQSIYRFQGAEPEVFDE----------AMENCSQVLELCE 277

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           +FR+ ++       +    +    +       + ++    G +  V++            
Sbjct: 278 NFRTNSE-------LGKKIDKIATILFPDYKPLSYKHQADGFLKVVEIV----------- 319

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLV 380
                       +  +E      A  +A  I  M+ +    S G   KR ++  D  VL 
Sbjct: 320 ------------NKAREEIIQNEAIYVAKKIKEMVESGFEISVGGKPKRKVKYSDFAVLS 367

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           RK      I  + + +  DY + +  N +  L +   I  L+ L   +   +    ++ +
Sbjct: 368 RK---IQNIAHIYKRVFEDYDVPLDINFKRGLLEQKEIVPLLGLLEILQYPDKKSGYLRL 424

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           L + +F   +  +            ++  + K           V+K+I +          
Sbjct: 425 LANDIFKVDKFTL------------LFYEMSKIECYVPE---DVLKFIAKQRDNLFVQKI 469

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            +         +   +    FG    + +  F +     E++   S++EL + +      
Sbjct: 470 SEILYEFEDMFEYSYKVYKFFGKGAYENVRLFYDLA---EESKSFSIEELYNFINYQGER 526

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS--QVFSHKHIKKMHIMPSLNDDPGI 618
                S + + V I ++H+AKGL  P+VFLV        F  +  K      +   +  I
Sbjct: 527 FSSFSSLDDSAVLI-SIHSAKGLSFPIVFLVGLCESTGYFPGRSPKLRGSYDTSTREYRI 585

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII--CKHSNTSNEKKS 676
             +  +        + +    K+  +EE  RL YV +TR    L +          ++  
Sbjct: 586 APFWMEK-----EYTRIKNISKQQEKEEGKRLFYVAITRPMAGLFLINSSLREAIKKRGG 640

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
            +    ++  +          I+      KD            +   +E    +  L DE
Sbjct: 641 VKSFGEEVGLNYILAKAEEIGIEKEVVEIKDTEEDLSNDFTCKQKNTIESTLPLMILPDE 700

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ----TFNRGLIIHKLLQV 792
            +   K  SP      +      S     G    + L S  +        G  +H++L++
Sbjct: 701 FENRFKFLSPSHIMDFKRCPAMFSLKYIMGLPVFDELSSKEEIQQNAKVLGTTVHRVLEL 760

Query: 793 IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-ITRLLENPMMTTAMSCDSYSEVSV 851
                       I     +N       E + ++   I    E+  +          E   
Sbjct: 761 TSLKDIKSLDTNIALAVLEN-----DFESEKIVRELILNFFESQFVKEIKDKVIKEES-- 813

Query: 852 SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
             +      + +I G ID++   +  IF+ ++KT+ H           +I QL IY   +
Sbjct: 814 EIRFYFKLGNQMIYGIIDKVYHLEDKIFLVDFKTNLHFDDTK---FNIYIPQLFIYTMAM 870

Query: 912 KDSYPNKSLVCLLIYVSEPK--VFIIPQNKLNKAFA 945
           K+ +P K++   + ++ E +   + + +  L     
Sbjct: 871 KERFPQKNIFSSIFWLREGRKFDYELKEEHLEDVMD 906


>gi|227325835|ref|ZP_03829859.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 673

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 101/639 (15%), Positives = 214/639 (33%), Gaps = 123/639 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  Q +      L++ +    +    + D        +S      L  +  +
Sbjct: 112 DQMALLKELTEQWLENDKVLLQQLISTISNWKNDLIDPAGAAATARSERD--KLFVHCYS 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  +   VLDF+DLI+    LLK+    A +R +    + ++L+DE QDT+  Q+E+
Sbjct: 170 LYHDHLRACNVLDFDDLILLPTLLLKQN---AEVRERWQNRLRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++  ++             
Sbjct: 227 VKLLVG----------TRARFTVVGDDDQSIYSWRGARPQNLVLLQQDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S              G     + + 
Sbjct: 269 DVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSEL------------GYGDELKVIT 316

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           + ++                          A R+            + ++   +  Q  D
Sbjct: 317 ANNED-----------------------HEAERVV---------GELIAHHFIKKTQYGD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L   +        +I    +          IKDL+A  R + + +DD 
Sbjct: 345 YAILYRGNHQSRLFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPDDDS 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        + ++                    Q   +++
Sbjct: 401 AFLRIVNTPKREIGPATMKKLGEWAGQRNKGLFSASFDLGLSQSLTGRGLESLQRFTQWL 460

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----E 540
            E+  +A+        D    +       +   S    E  +  +++  ++        +
Sbjct: 461 AEIALLAEREPVAAVRDLIHGLDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSD 520

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            N   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 521 LNEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       +   +E  RL YVG+TRA  
Sbjct: 581 QSSID-----------------------------------EDNVDEERRLAYVGITRAQR 605

Query: 661 QLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           +L   +CK      E    + + + +           ++
Sbjct: 606 ELFFTLCKERRQYGELVRPEPSRFLLELPQDDVVWETER 644


>gi|86150413|ref|ZP_01068639.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88596728|ref|ZP_01099965.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|85839238|gb|EAQ56501.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|88191569|gb|EAQ95541.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|284926330|gb|ADC28682.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 691

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 195/539 (36%), Gaps = 92/539 (17%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKL---KKSQDEFIKIRDRFNTYKMF--KSTLASLTLA 130
                 K++I  +      D+ + +   K        + +  N  K    +        A
Sbjct: 114 DTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKEHNFEKYQNEYKFA 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ 
Sbjct: 174 N-YYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNT 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +     
Sbjct: 230 LQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN---- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS   IL   + + S  E   G +                      
Sbjct: 276 ----VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKT---------------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++   +     ++     + L            IA  +  ++ +           
Sbjct: 310 --LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKLLNSG---------- 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++AK+I +L R    +  I           +IS          + L IKDL++  R IL+
Sbjct: 347 VEAKEIAILFRVNALSRAIEEAF----MKKQISYKLLSGMRFYERLEIKDLISYLRLILN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKF 481
             DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++ 
Sbjct: 403 PSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQNEA 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I+ IH L          D    +   K    +     G+E I  LDEF        +
Sbjct: 463 NIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIRNLDEFYANLREKLK 520

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL++L+SE+                 V +M++H +KGLE   VF++      F 
Sbjct: 521 EDPKASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFP 575


>gi|304314626|ref|YP_003849773.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588085|gb|ADL58460.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 916

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 146/901 (16%), Positives = 267/901 (29%), Gaps = 178/901 (19%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                  E     S     +    +  + +     +  +  E   +  +  +   +    
Sbjct: 107 HDLGAGFEILDEESQLMFLRSVFYRIGLNSFMKMGEVHEAIEFFNRCTENCVDPDELMEA 166

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            K                + Y +A ++   +DF  L      LLK  +    +   +  +
Sbjct: 167 LKKRYPDKKRYHGMAACYSQYLKALREEKKIDFPGLEKEVCLLLKSNED---VLESVRNK 223

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +I+IDE QDTS IQ  + R + E             ++  VGDE QSIY F GA P+ 
Sbjct: 224 YRYIMIDEYQDTSPIQERIFRRIAE----------PKSSICVVGDEDQSIYGFRGATPEN 273

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +R +               ++ L  +FRS A I+   D+      + Q           
Sbjct: 274 FIRFRDKY---------DAEVVFLEDNFRSRAGIVLTADRFMRGERHYQKTI-------- 316

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
            +  R G    V L  + V+                             AR I   I  +
Sbjct: 317 -KPVRGGGTDVVILRSRDVNSE---------------------------ARNIVSLIKKL 348

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
             T  I   G         + +L R                    I  +           
Sbjct: 349 KSTGKIPDYGY--------VALLFRS---VRYHADKILRELRREGIPYIVRGDGSFLKRY 397

Query: 417 AIKDLMALGRFILSQEDD---------LSFVCMLKSPLFNFSEDDIFKICT-QRHETETV 466
            ++ ++    ++   + D            + M +    +  E+ +  + + +R    + 
Sbjct: 398 EVRRMLYFLAYVDPPDYDDKFSGRWGGWWNISMFRGDFLDLGEETLEALESLERDVKLSD 457

Query: 467 YEYIQKF-ANCGISKFQHVIKYIHELIHIAQFCSPHDF--FTLILGAKKGRQQFISRFGN 523
           +  IQ+  A     +    I  ++ +    +  S      F  IL      ++ +    +
Sbjct: 458 FTSIQELEAAGIRGEDAEKILGLNRIRDELEQGSLSVLQTFYRILEVTGYLRRLLLDGSD 517

Query: 524 EVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMTV 577
           +       L +  +   + E     + +Q+++  L   P  +    +   +   V++MTV
Sbjct: 518 KSRARIFNLAKLSSLIDKYETIKPGARIQDILWYLYLLPQHLHHDEAVLEDPASVKVMTV 577

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE PVVF+       F     ++  ++P                     +   + 
Sbjct: 578 HQAKGLEFPVVFICSVIKGRFPGIKRRRKELVP---------------------IPQELL 616

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                 ++E  RL YV MTRA D LII      +  K        ++       +     
Sbjct: 617 LSSGEPEDEDRRLFYVAMTRAQDALIISTAPRINTRKVGISPYITELREKCGIYECECTS 676

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
           I+                                                +    EP  +
Sbjct: 677 IEGCLE--------------------------------------------REWAEEPLRI 692

Query: 758 NPSTIDTKGKTNLESLLSDNQTF--------NRGLIIHKLLQVIF---TLPEHKRKNFIT 806
           N S + T  +     ++  +  F          G+I+H+ L+ +       E     FI 
Sbjct: 693 NFSALFTYEECPFRYMMIYHYGFVYPETFMQRYGIILHRCLEELHLAMKNSEDINGAFIR 752

Query: 807 SYCTK---NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
               +           + + L   +     +              VSV    + P  DII
Sbjct: 753 ELVERCWIPMGRDDEVKKRRLERELLNYYHDSR------DHIEEVVSVEEPFSIPDDDII 806

Query: 864 ISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
           I GR D I   S   + + ++K        IE +   +  QL  YE  L+D Y    L  
Sbjct: 807 IEGRTDLIIRNSGGELELVDFK--AREHGGIERMGLEY--QLRTYEYALRDRYNFDRLSA 862

Query: 923 L 923
            
Sbjct: 863 Y 863


>gi|157415362|ref|YP_001482618.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|157386326|gb|ABV52641.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748003|gb|ADN91273.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315932239|gb|EFV11182.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 691

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 102/539 (18%), Positives = 195/539 (36%), Gaps = 92/539 (17%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKL---KKSQDEFIKIRDRFNTYKMF--KSTLASLTLA 130
                 K++I  +      D+ + +   K        + +  N  K    +        A
Sbjct: 114 DTKKIIKDLIHDKNKDNVYDIIKYISYCKNEGKRVSNVFEDLNLLKEHNFEKYQNEYKFA 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ 
Sbjct: 174 N-YYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNT 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +     
Sbjct: 230 LQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN---- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS   IL   + + S  E   G +                      
Sbjct: 276 ----VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKT---------------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++   +     ++     + L            IA  +  ++ +           
Sbjct: 310 --LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKLLNSG---------- 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++AK+I VL R    +  I       K    IS          + L IKDL++  R IL+
Sbjct: 347 VEAKEIAVLFRVNALSRAIEEAFMKEK----ISYKLLSGMRFYERLEIKDLISYLRLILN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKF 481
             DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++ 
Sbjct: 403 PNDDLSFRRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQNEA 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I+ IH L          D    +   K    +     G+E I  LDEF        +
Sbjct: 463 NIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIRNLDEFYANLREKLK 520

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL++L+SE+                 V +M++H +KGLE   VF++      F 
Sbjct: 521 EDPEASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFP 575


>gi|328752848|gb|EGF66464.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL025PA2]
          Length = 1078

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 124/868 (14%), Positives = 246/868 (28%), Gaps = 140/868 (16%)

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A  +        K   V  F+DLI +    L+           +      +++DE QDT 
Sbjct: 205  ALSVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTD 264

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +QWE++R                  L+ +GD KQSIY+F GA+        +       
Sbjct: 265  PLQWEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ------- 307

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGT 307
                   ++ L +++R+   I+  V+ +FS  +    +S +  +      R       G 
Sbjct: 308  ---SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHDISMELVTAHHQESRIKTAATDGP 364

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               W Q       Q     +  T+  D    E         +   I  + G   +     
Sbjct: 365  RYHWSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDG 417

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LVR R+    +               V +    +    A +DL+ L   
Sbjct: 418  LRPLRPTDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLITLLEA 473

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D+     +  S L   +  D+    ++      +              +  V   
Sbjct: 474  LEN-TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAA 532

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +H                 ++    G +             +             + ++ 
Sbjct: 533  LHR----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATA 577

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    
Sbjct: 578  AWIREQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPI 637

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +     D     + I    +  +I    I+  ++  + E  RLLYV +TRA   + +   
Sbjct: 638  VWH---DGQRRVLDISSQGTDRSI---AIESHEEDERGENLRLLYVALTRARSAVRLWWS 691

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +     +  +V       E    +  T+        +   +T           
Sbjct: 692  PCP---LRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPWLNSGPIATVIAPANQKLLT 748

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYI------LNPSTIDTKGKTNLESLLSDNQ--- 778
             ++        +P+ L  P+               L+ +  +      ++  + D     
Sbjct: 749  RSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDD 808

Query: 779  ----------TFNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLS 827
                        + G ++H +L+ I T         +  +         P      L  S
Sbjct: 809  TAPGLCGLPGGTSFGTLVHTVLEYIDTAAIDLSSEVLSITRRALRMSPLPDVPPSELATS 868

Query: 828  ITRLLENPM--------MTTAMSCDSYSEVSVSGKIN----------------------- 856
            + ++L + +        +      D  +E++    +                        
Sbjct: 869  LEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPP 928

Query: 857  -------------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQEI----- 893
                          P  D  + G     ID +         + +YKT+            
Sbjct: 929  DDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHM 988

Query: 894  --------EHIPYTHIAQLSIYEKILKD 913
                          +  Q  +Y   L  
Sbjct: 989  YDAHTMRTMMFSSHYPLQGLLYSAALHR 1016


>gi|293369068|ref|ZP_06615665.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f]
 gi|292635836|gb|EFF54331.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f]
          Length = 1056

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 124/864 (14%), Positives = 262/864 (30%), Gaps = 108/864 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            KN  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KNWATKTSPRYADIINLANSSLMQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +    N       L+ +TN LL +      S+++  KI   I++++IDE QDTS +
Sbjct: 345  EEVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIHNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +       +      
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNSLNNHIEHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +++   +++F+   N                 +      V   
Sbjct: 451  --PIRVKTLATNRRSETNVIRFNNQIFTAAANYLNGVYKQQLGKDCEDLQKAYADVV--- 505

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                 Q   +   +     S+ +   +          +   + +++ +           +
Sbjct: 506  -----QESPRSTEKGYVKVSFLEPDEEHDYTEQTLISLGEEVQHLLTSG----------V 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  DI +LVRK K  P I         +    VV ++ F L   LAI  ++   RF+  +
Sbjct: 551  RLNDIAILVRKNKSIPRIADYF---DKELHYKVVSDEAFRLDASLAICMMLDALRFLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  ++   EL
Sbjct: 608  NNKIA-------------RAQLAVAYQNEVLQKGLDWNTLLLLPAENYLPAAFLEKTKEL 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      +    L  F +  +   Q++ S L   I
Sbjct: 655  R----LMPLYELLEELFSI------FEMNLIKDQDAYLFAFFDAVIDYLQSNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               ++   +           +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RYWDETLCSKTIPSGEVEG-IRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQ 763

Query: 612  --LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +   I      ++   +I  +     +     +   LLYV  TRA   LII    +
Sbjct: 764  TAPFNTLDILPINYSTQMAESIYGNDYLQERLQLWVDNLNLLYVAFTRAGKNLIIWSRKS 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      D      +       +                   +E 
Sbjct: 824  QKGTMSELLANTLPIVAQEEGIDWEEDCYEQGQLCPSE-------------------KER 864

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            IK   ++     +        +        S         +E   SD++  NRG ++H L
Sbjct: 865  IKTSTNKLTQKPEKLPIRMESMRHDIEFRQSNRSADFIQGIEEEDSDDRFINRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSE 848
              VI           I         +    E + +   +  +   +P +    S   ++ 
Sbjct: 925  FSVIE--TAEDIDPAIERLI--FEGVIRNDEKEKVAREVAKKAFSSPEIQDWYS-GKWT- 978

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            +     I   +K ++ + R D++ +    + + ++K     P         +  Q+  Y 
Sbjct: 979  LFNECAIIYKEKGVLQTRRPDRVMMKDDQVVVVDFKFGKENP--------KYNKQVKGYM 1030

Query: 909  KILKDSYPNKSLVCLLIYVSEPKV 932
            ++L      K++   L YV E K+
Sbjct: 1031 QLLTKM-GYKNITGYLWYVDEEKI 1053


>gi|163847396|ref|YP_001635440.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222525244|ref|YP_002569715.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
 gi|163668685|gb|ABY35051.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222449123|gb|ACM53389.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
          Length = 644

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 111/639 (17%), Positives = 192/639 (30%), Gaps = 121/639 (18%)

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINK--KSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
           E R    +S F       Q  +  + +    ++P    +  +      + + R  T ++ 
Sbjct: 100 EGRLKGYTSSFSIYAGEEQLQLAAEALAGVGETPPRLIEADEVLRLISRAKSRMLTPRLM 159

Query: 121 KS--TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
               T             Y+ A ++   LDF+DLI+    LL        +     Q   
Sbjct: 160 ARFATDPLDRFIAACYRRYQRALEQANALDFDDLILTAYRLLSDDPD---LLATYQQRWQ 216

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           H+L+DE QDT   Q  +I  LT        T   PR+LF VGD  QSIY F  A+   + 
Sbjct: 217 HVLVDEYQDTDPSQHALIELLTR------PTAQRPRSLFVVGDAMQSIYGFRNADHSIIN 270

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
           R                 +IEL  ++RS   IL     +     +   +   +       
Sbjct: 271 RFATDFP--------DARVIELTTNYRSRQPILDAAYAIIRHSRSVAPMELRAAA----- 317

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                        +       + +   +   A ++A +I+++  
Sbjct: 318 ----------------------------RNVDERCVLISEARDSRDEADQVARSIADLQR 349

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                        + +DI VL R R  +       R      +I           D   +
Sbjct: 350 QGR----------RLRDIAVLYRTRHMSRPFEQALR----HARIPYQVRGGVSFFDRAVV 395

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           +D +A  R I +  D+LS   +   P        +  I                 A    
Sbjct: 396 RDALAYLRCIANPADNLSLTRIANVPARGLGGQALATIAAYAAAQSLPISTALGHARNIP 455

Query: 479 -------SKFQHVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFG----NEVI 526
                       +   +     +A+    P      +L           RF      E  
Sbjct: 456 GLSPRAVEGAHRLFALLQRWWRLAESTMPPDHVLADVLEQSGYMAALAERFDAEELAEAR 515

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             L E L     +     + L+  + E+     T         + V+++T+H AKGLE P
Sbjct: 516 AHLQELLRAAEEH-----TDLRSFLQEVALM--TNTDDEDDERDRVQLLTIHAAKGLEWP 568

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V        H+                                        +  EE
Sbjct: 569 FVFVVGLEEGTLPHERSIGDP----------------------------------AAIEE 594

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             RL YV +TRA+++L +   ++    ++     + D +
Sbjct: 595 ERRLCYVALTRAAERLYLSWTASRQRGQRLKPSRFLDEI 633


>gi|283956498|ref|ZP_06373978.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792218|gb|EFC31007.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 691

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 195/539 (36%), Gaps = 92/539 (17%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKL---KKSQDEFIKIRDRFNTYKMF--KSTLASLTLA 130
                 K++I  +      D+ + +   K        + +  N  K    +        A
Sbjct: 114 DTKKIIKDLIHDKNKDNVYDIIKYISYCKNEGKRVSNVFEDLNLLKEHNFEKYQNEYKFA 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ 
Sbjct: 174 N-YYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNT 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +     
Sbjct: 230 LQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN---- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS   IL   + + S  E   G +                      
Sbjct: 276 ----VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKT---------------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++   +     ++     + L            IA  +  ++ +           
Sbjct: 310 --LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKLLNSG---------- 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++AK+I +L R    +  I           +IS          + L IKDL++  R IL+
Sbjct: 347 VEAKEIAILFRVNALSRAIEEAF----MKKQISYKLLSGMRFYERLEIKDLISYLRLILN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKF 481
             DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++ 
Sbjct: 403 PNDDLSFRRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQNEA 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I+ IH L          D    +   K    +     G+E I  LDEF        +
Sbjct: 463 NIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIRNLDEFYANLREKLK 520

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL++L+SE+                 V +M++H +KGLE   VF++      F 
Sbjct: 521 EDPEASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFP 575


>gi|86150915|ref|ZP_01069131.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315124581|ref|YP_004066585.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85842085|gb|EAQ59331.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|315018303|gb|ADT66396.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 691

 Score =  244 bits (622), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 179/479 (37%), Gaps = 86/479 (17%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ 
Sbjct: 173 ANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNT 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +     
Sbjct: 230 LQYKILKNLCRM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN---- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS   IL   + + S  E   G +                      
Sbjct: 276 ----VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKT---------------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++   +     ++     + L            IA  +  ++ +           
Sbjct: 310 --LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKLLNSG---------- 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I+AK+I +L R    +  I       K    IS          + L IKDL++  R IL+
Sbjct: 347 IEAKEIAILFRVNALSRAIEEAFMKEK----ISYKLLSGMRFYERLEIKDLISYLRLILN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKF 481
             DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++ 
Sbjct: 403 PNDDLSFRRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQNEA 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I+ IH L          D    +   K    +     G+E I  LDEF        +
Sbjct: 463 NIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIRNLDEFYANLREKLK 520

Query: 542 NS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL++L+SE+                 V +M++H +KGLE   VF++      F 
Sbjct: 521 EDSEASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFP 575


>gi|262340924|ref|YP_003283779.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272261|gb|ACY40169.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 709

 Score =  244 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 96/547 (17%), Positives = 188/547 (34%), Gaps = 113/547 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y +   +   LDF+D++++TN L         +  K   +  +ILIDE QDT+L Q
Sbjct: 162 IYKSYIKRCLQAEALDFDDILLHTNHLFSHFP---NVLRKYQNKFKYILIDEYQDTNLSQ 218

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +I+SL              + LF VGD+ QSIY+F GA+   +L      +       
Sbjct: 219 NTIIKSLA----------FQHKNLFVVGDDAQSIYAFRGAKISNILNFHIDYKN------ 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +  L  ++RST  I+   + + S  +N           ++   +   +   V+++ 
Sbjct: 263 --AKVFRLEQNYRSTHHIVQASNNIISFNKN---------QILKKIWTNNEKGEKVKIYS 311

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                 +  ++  A  +A  I   I                   
Sbjct: 312 ----------------------ASSEKEEALYVASSIFSIIKK-------------TKYH 336

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            KD  +L R    + +I +  +       I               I+DL+A  R I++  
Sbjct: 337 YKDFAILYRANMQSNIIEYALKE----KNIPYKIYGSISFEKRKEIRDLLAYLRIIVNSN 392

Query: 433 DDLSFVCMLK-------SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           D+ S + +LK         + + S+  I     +  +    Y+++        +K +++I
Sbjct: 393 DEESLLRILKKGNKKTIKSILDLSKK-IRITVYEIIKNIENYQHLLILNQKTKNKLKNLI 451

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAK--KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             I +     +          I+     +  + + +     +++ +  +++   + + N 
Sbjct: 452 STIEKFRKNTEKKDAFAIAKEIVNFLLKEDPKNYKNENFQYILNNIFCYVSEQKKLKDNG 511

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             SL   +                  N+V +MTVH +KGLE  +VF++     +F  K  
Sbjct: 512 EISLSGFLQYFYLEIDEDMNHDENEENKVSLMTVHLSKGLEFSIVFIIGLEENLFPSKSS 571

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                +   EE  RL YV +TRA  + +
Sbjct: 572 LD----------------------------------NQFKIEEERRLFYVALTRAQKKAV 597

Query: 664 ICKHSNT 670
           +    + 
Sbjct: 598 LTYARSR 604


>gi|319778427|ref|YP_004129340.1| ATP-dependent DNA helicase pcrA [Taylorella equigenitalis MCE9]
 gi|317108451|gb|ADU91197.1| ATP-dependent DNA helicase pcrA [Taylorella equigenitalis MCE9]
          Length = 1109

 Score =  244 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 145/884 (16%), Positives = 300/884 (33%), Gaps = 121/884 (13%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM-FKSTLASLTLAKYLNAHYEEAKKKNC 145
            ++  K+  +   KL+ +  +   + D+FN+     +   A+L LA        E      
Sbjct: 312  KDFLKRHEE-DHKLEDALKKICLLPDQFNSLAQNLEIFYATLGLA---LEKLNEVFSNYS 367

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            ++DF +  I     L + D  + +  KID +++HILIDE QDT+  Q +++  +T  + V
Sbjct: 368  IIDFNESSIRALTALGEADDPSDLLLKIDNDLHHILIDEFQDTNFNQKQLLEKITSGWSV 427

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA---------GQKFS 256
            G       RT+F VGD  QSIY F  AE    +      ++                   
Sbjct: 428  GDG-----RTIFLVGDPMQSIYRFRQAEVGIFIDYAEKAKRNIGLPLSDQIGVVGDIPLE 482

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
             + L ++FRS  +I+  V+  FS                +    +   V     +    S
Sbjct: 483  FLSLSVNFRSNKNIIDWVNNKFS----------------KKFPLKDNPVLGAISYTPSES 526

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              D+      +  +   D+     +A  +A++                  +     +K +
Sbjct: 527  FKDASSEDCVQIHSFLKDTKGCYENAVNIAKK----------------ALESHPNSSKPV 570

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             +LV+ R                  ISV   +   L D   I DL+ L R +  + D L+
Sbjct: 571  GILVKSRSHL----ENLVEQLVSAGISVKAVEMVSLGDTEEIMDLVQLIRLLSHKGDRLA 626

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHE-------TETVYEYIQKFANCGISKFQHVIKYIH 489
            ++ +L+SP+   +   + +I   R          E + +   K +       +       
Sbjct: 627  WMSILRSPMCGLTLKTLTRIFESRKNVSPASALREVLKDSNFKKSIDENEFMRLFYVSDI 686

Query: 490  ELIHIAQFCSPH--DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             L +   +       F +++       + + S      I  + E L  +           
Sbjct: 687  LLRNPLNYPRVAFPQFVSMVWEDLGANKIYSSEIQQANIKRVIELLEKSSPYGAIDIEGF 746

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + +L             +   V IMT+H+AKGLE   V L     +   +     + 
Sbjct: 747  ERNLQKL-------YAQDVVSGPAVEIMTMHSAKGLEFDEVILFGLNRKP-PNNQANLIE 798

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                 N      +    +  ++++   + +  K+  + E  RL+YV  TRA  +L +  +
Sbjct: 799  FENYGNSFLVSSVGHKGTGVKDDLFDLINQRNKERDEFETMRLIYVACTRAKRKLHLFVN 858

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                NE           V       +   +     SI K+   +               E
Sbjct: 859  ITNKNET----------VSAGSIAGQLGLQETDEFSITKNYVPS---------------E 893

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
            E   + +        +     ++   P   + S  +   + +      D      G ++H
Sbjct: 894  EIQDEKVTTLIDKSIIKRLTIDEFKVPTADSSSIANLAIRESKTWQFDDQYISCVGHVVH 953

Query: 788  KLLQVIFTLPEH----KRKNFITSYCTKNAKLWPAKEYK------NLLLSITRLLENPMM 837
              L+ +          +R         K+                 ++  + +  +N  +
Sbjct: 954  MWLERMGRDKLVGWDFERIKNARGLVQKHLHTLGLPNVALTGATTRVIKLLLKAYDNHTV 1013

Query: 838  TTAM-SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH-HHVPQEIEH 895
               + + ++  E S+  ++   +       R D +  +  +  + ++KT+  H  +E E 
Sbjct: 1014 KWLLTNANAMQEWSLFDEMATER-------RFDVVVDNGDHWLLVDFKTNIKHEDEEYED 1066

Query: 896  IPYT----HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                    +  QL++Y K L+  + +K ++  L+ +   +   +
Sbjct: 1067 FIGRMIRVYTPQLNMYAKYLQS-FNDKPVIKKLLVLETCEFIDL 1109


>gi|33600423|ref|NP_887983.1| putative nuclease/helicase [Bordetella bronchiseptica RB50]
 gi|33568022|emb|CAE31935.1| putative nuclease/helicase [Bordetella bronchiseptica RB50]
          Length = 1134

 Score =  244 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 142/1002 (14%), Positives = 273/1002 (27%), Gaps = 143/1002 (14%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYV----SLSMETGNPTILKKAQTLQQASQ 58
            +R GL  +   E +  +L  L        ++ +     L+      +   +   LQ    
Sbjct: 207  DRDGLEASL-AEALEHELDSLCGQLPRGWSQALCGPARLAAAALAGSGDARLAALQDWDA 265

Query: 59   TQCIE----ERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKK------ 102
                     +++  L+   LT     +      KN+               L        
Sbjct: 266  PLPPMAEALDQWRALAHLLLTGTGALRSPKGVNKNLGFPAGCDHKEPFTAWLAACDGGAP 325

Query: 103  ---SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
               +      + D   +   +    A LT      A       +   +DF ++       
Sbjct: 326  WVRALAAVRDMPDAHFSDAQWDVLSAQLTTLALSVAQLRVQFARAGEVDFIEIAQRAAYA 385

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            L   D    +  K+D  I H+LIDE QDTS  Q +++ +LT  +  G       RTLF V
Sbjct: 386  LGSGDDPGELLLKLDASIRHLLIDEFQDTSQGQIDLLATLTAGWQDGDG-----RTLFLV 440

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD  QSIY F  AE    L+              +   ++L  +FRS   ++  V++VF+
Sbjct: 441  GDPMQSIYRFRKAEVGLFLQVAEQ-----GVGQIRPGFLQLTDNFRSQGGVVDWVNRVFA 495

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                                +     G +           +   P +             
Sbjct: 496  QLLPR---------------ANDADSGAIAYSPSTAFHETA---PGEAVRFHPAWECGDA 537

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            +SA   A  IA     ++        G +       + +LVR R                
Sbjct: 538  ASAERQAEDIA---VGLVRAALAEHEGSRHP-----VAILVRARSHLGS----LTRRLAQ 585

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              I     +   L     + DL+ L R +    D L+++ +L++P    +   + ++   
Sbjct: 586  EGIPCRAVELVPLGLRPVVADLVQLARALAHPADRLAWLSVLRAPWCGLTLTSLQRLFGA 645

Query: 460  RHE--------------------TETVYEYI-------QKFANCGISKFQHVIKYIHELI 492
              +                      ++++         Q  A     + + V   + +  
Sbjct: 646  DQQTPVPTLLERALRGAARSEGGQGSLFDAPAPGCLAEQALAPDEYRRLRAVAAILLDRA 705

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            + A       +   +     G   +         + L + +     +       L   ++
Sbjct: 706  NDAGLLPLAAWLEQLWRRLGGPGLYPGSSAASDAESLFQLIERLAPHGGLDAGLLDTAVA 765

Query: 553  ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
             L           +     V IMT+H +KGL+   V L               +    S 
Sbjct: 766  RLFAA-----PQATGEQGTVEIMTMHKSKGLQFDTVILYGLHRAPR-GDQAPLVRFEQSG 819

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                  PI        + +   L     +    E +RLLYV  TRA  +L +  H     
Sbjct: 820  GRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDRLLYVAATRARQRLHLVAHVAVDA 879

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
                                    +   + S+    W                     + 
Sbjct: 880  ASGQ-------------------ARTPASASLLGRLWPHLPVPQPPDVAQDQAAATGEQP 920

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT---FNRGLIIHKL 789
             +  + + +   + + +          +     G    E      +       G + H  
Sbjct: 921  ALVGEPLRRLAGAGLASLAARTLPREAAAGAYGGGQGAEHPSWQLEAGYDAAVGTLAHAW 980

Query: 790  L--------QVIFTLPEHKRKNFITSYCTKNA--KLWPAKEYKNLLLSITRLLENPMMTT 839
            L        Q         R   +    T+            + +L ++   L++     
Sbjct: 981  LARIGGDGPQHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDERGRW 1040

Query: 840  AMS-CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH-----VPQEI 893
             +    +  E      +      + +   ID    ++    I +YKT          Q  
Sbjct: 1041 LLGQARARREWP----LIDAAGRVSV---IDLALSTEDGWLIVDYKTGRPHEHETPEQFA 1093

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              +   H  QL  Y   +      +     L +        +
Sbjct: 1094 IRMRQRHGEQLMRYCAQVTALD-GRPARAALYFPRARAWIDL 1134


>gi|237720843|ref|ZP_04551324.1| ATP-dependent helicase [Bacteroides sp. 2_2_4]
 gi|229449678|gb|EEO55469.1| ATP-dependent helicase [Bacteroides sp. 2_2_4]
          Length = 1056

 Score =  244 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 123/865 (14%), Positives = 256/865 (29%), Gaps = 110/865 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            KN  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KNWATKTSPRYADIINLANSSLMQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +    N       L+ +TN LL +      S+++  KI   I++++IDE QDTS +
Sbjct: 345  EEVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIHNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +       +      
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNSLNNHIEHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +++   +++F+   N                 +      V   
Sbjct: 451  --PIRVKTLATNRRSETNVIRFNNQIFTAAANYLNGVYKQQLGKDCEDLQKAYADVV--- 505

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                 Q   +   +     S+ +   +          +   + +++ +           +
Sbjct: 506  -----QESPRSTEKGYVKVSFLEPDEEHGYTEQTLISLGEEVQHLLTSG----------V 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  DI +LVRK K  P I         +    VV ++ F L   LAI  ++   RF+  +
Sbjct: 551  RLNDIAILVRKNKSIPRIADYF---DKELHYKVVSDEAFRLDASLAICMMLDALRFLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  ++   EL
Sbjct: 608  NNKIA-------------RAQLAVAYQNEVLQKGLDWNTLLLLPAENYLPAAFLEKTKEL 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      +    L  F +      Q++ S L   I
Sbjct: 655  R----LMPLYELLEELFSI------FEMNLIKDQDAYLFAFFDAVTDYLQSNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               ++   +           +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RYWDETLCSKTIPSGEVEG-IRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQ 763

Query: 612  --LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +   I      ++   +I  +     +     +   LLYV  TRA   LII     
Sbjct: 764  TAPFNALDILPINYSTQMAESIYGNDYLQERLQLWVDNLNLLYVAFTRAGKNLIIWSRKK 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      D      +       +                   +E 
Sbjct: 824  QKGTMSELLANTLPIVAQEEGIDWEEDCYEQGQLCPSE-------------------KER 864

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            IK   ++     +        +        S         +E   SD+   NRG ++H L
Sbjct: 865  IKTSTNKLTQKPEKLPIRMESMRHDIEFRQSNRSADFIQGIEEEDSDDHFINRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMT-TAMSCDSYS 847
              VI           I         +    E + +   +  +   +P +        +  
Sbjct: 925  FSVIE--TAEDIDPAIERLI--FEGVIRNDEKEKVAREVAKKAFSSPEIQDWYFGKWTLF 980

Query: 848  EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                   I   +K ++ + R D++ +    + + ++K     P         +  Q+  Y
Sbjct: 981  ---NECAIIYKEKGVLQTRRPDRVMMKDDQVVVVDFKFGKENP--------KYNKQVKGY 1029

Query: 908  EKILKDSYPNKSLVCLLIYVSEPKV 932
             ++L      K++   L YV E K+
Sbjct: 1030 MQLLTKM-GYKNITGYLWYVDEEKI 1053


>gi|253690376|ref|YP_003019566.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756954|gb|ACT15030.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 675

 Score =  244 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 103/639 (16%), Positives = 215/639 (33%), Gaps = 123/639 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  Q +      L++ +    +    + D        +S      L  +  +
Sbjct: 112 DQMALLKELTEQWLENDKVLLQQLISTISNWKNDLIDPAGAAATARSERD--KLFVHCYS 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y E  +   VLDF+DLI+    LLK+    A +R +    + ++L+DE QDT+  Q+E+
Sbjct: 170 LYHEHLRACNVLDFDDLILLPTLLLKQN---AEVRERWQNRLRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++  ++             
Sbjct: 227 VKLLVG----------TRARFTVVGDDDQSIYSWRGARPQNLVLLQQDFPT--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S              G     + + 
Sbjct: 269 DVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSEL------------GYGDELKVIT 316

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           + ++                          A R+            + ++   +  Q  D
Sbjct: 317 ANNED-----------------------HEAERVV---------GELIAHHFIKKTQYGD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + L   +        +I    +          IKDL+A  R + + +DD 
Sbjct: 345 YAILYRGNHQSRLFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPDDDS 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        + ++                    Q   +++
Sbjct: 401 AFLRIVNTPKREIGPATMKKLGEWAGQRNKGLFSASFDLGLSQSLTGRGLESLQRFTQWM 460

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----E 540
            E+  +A+        D    +       +   S    E  +  +++  ++        E
Sbjct: 461 AEIARLAEHEPVAAVRDLIHGLDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSE 520

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 521 LDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       +   +E  RL YVG+TRA  
Sbjct: 581 QSSID-----------------------------------EDNVDEERRLAYVGITRAQR 605

Query: 661 QLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           +LI  +CK      E    + + + +           ++
Sbjct: 606 ELIFTLCKERRQYGELVRPEPSRFLLELPQDDVVWETER 644


>gi|149923566|ref|ZP_01911966.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149815585|gb|EDM75117.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 693

 Score =  244 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 91/621 (14%), Positives = 188/621 (30%), Gaps = 114/621 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A  L   Y++  +    +DF+DL+     +L+   ++     +  +   ++L+DE QD
Sbjct: 170 EIAAELYEAYDDRLRALAAVDFDDLVCRIALMLQDNPLTK---KRWRRRFRYLLVDEYQD 226

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q++++  L  +           + L  VGD+ Q+IY + GA+   +L      +  
Sbjct: 227 TNTAQFQMLLELLGED----------QNLCVVGDDDQAIYGWRGAKVANILGFDLYFRN- 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS   I T  + V +   +                        
Sbjct: 276 -------AKVIKLEANYRSRPPITTCANAVIAHNTSRHDKELVPQR-------------- 314

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            ++       D   +       A+ +A  I  +I          
Sbjct: 315 --------------TGGEKVQLVVTRDGPSE-------AKWVADKIYQLI---------H 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +R  + K   VL R  +    +    +     + +           D   +KD  A  + 
Sbjct: 345 ERGARPKHCAVLYRSSRQARAVEQNLQE----HGLPFRMLGGQPFYDKKTVKDATAYLKL 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISK 480
           ++   DD++    L +P        + ++            +     + I+      +  
Sbjct: 401 LVMPSDDIAVRRALDTPAKGIGRKTVERMSHWAEVHQKRLVDAIYHAKEIEGITGRPLES 460

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
            +     +      A   S  D     L   + R   +   G+        D +   L+ 
Sbjct: 461 LERFHNQLRHAQIAASRGSVKDALRGFLDNVRLRDSVLKETGSGEATKVRWDSVQFLLDS 520

Query: 536 TLRNEQN--SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             R E+   +          L       K    A  + + + T H++KGLE   VF++  
Sbjct: 521 VGRFEERAWNQKGKPRWSDYLGNLDLKKKDEDEAVPDAITLSTFHSSKGLEWSQVFIIGV 580

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                 HK      +  ++  D                             EE  RL YV
Sbjct: 581 EEGTLPHKRTDAPRLSDAIAGD----------------------------LEEERRLFYV 612

Query: 654 GMTRASDQLIICKHSNTSNEKKS---NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           G+TRA D+L + + +   +  +        + D + +           + T  +  +   
Sbjct: 613 GITRARDRLWMTRAATRVDRGRELEIKPSRFLDELPEPDSGVIEHNDTRETEKLTTETME 672

Query: 711 AYEWSTHHPENTPLEREETIK 731
               +        +   E   
Sbjct: 673 ELASAFMSQLQATIAPPEDAS 693


>gi|193217029|ref|YP_002000271.1| ATP-dependent DNA helicase [Mycoplasma arthritidis 158L3-1]
 gi|193002352|gb|ACF07567.1| ATP-dependent DNA helicase [Mycoplasma arthritidis 158L3-1]
          Length = 726

 Score =  244 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 97/560 (17%), Positives = 173/560 (30%), Gaps = 98/560 (17%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+E       LDF+DL++    L         I +K  +   ++LIDE QDTS +Q
Sbjct: 172 IYKSYQERLNNAHSLDFDDLLVFVYRLFYDP-KFEEISHKWSKRFKYLLIDEFQDTSELQ 230

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++++ L                +  VGD  Q+IYS+  A+   ++   +   +      
Sbjct: 231 YKIVKILAG-----------SGNITVVGDPDQTIYSWRNADINIIMNFDKDFPEAV---- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I+L  ++RST  IL   + + S  +                              
Sbjct: 276 ----TIKLEQNYRSTKKILNAANNLISYNKFRLDKKLF---------------------- 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +   +   F    +       AR+IA  IS +          K++ +Q
Sbjct: 310 ------TDNEEGEDIDFYCGFSEEAE-------ARKIASKISEL----------KRKRVQ 346

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K+I +L R    +  I      L N+  I               +KD +A  R I    
Sbjct: 347 LKNIAILFRISSYSRAIEE---ALINENTI-YKLFGSTKFYQREEVKDALAYLRVIHD-G 401

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY----------EYIQKFANCGISKF 481
            ++S + ++  P        I K+    +     ++          +         +   
Sbjct: 402 SEISLLRVINKPARRIGTSTIDKLLKFSKENNLDLFKCLDTKFNEIQKNLHIQMETLKNL 461

Query: 482 QHVIKYIHELIHIAQFCSPH-DFFTLILGAKKG--RQQFISRFGNEVIDVLDEFLNFTLR 538
             +I  I     I Q    +      ++   K     +         ++     +     
Sbjct: 462 ASLINEIRWARRIIQGNQIYLTLKEFMINNIKYFEEYKSSEEEYENRMENFLNLIEAIHV 521

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQV 597
            E         +   L++      R    +    V +MT+H AKGLE   VF+V     +
Sbjct: 522 WETKHPHG--TIDEYLQEITLITDRDVEDDAASYVSLMTIHNAKGLEFDYVFVVGLSEDI 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F  +    +         P                    +       EE  RL YV MTR
Sbjct: 580 FPLRRAITISPKFDFTYLP-----------FEKEEELQKQPENIEGLEEERRLAYVAMTR 628

Query: 658 ASDQLIICKHSNTSNEKKSN 677
           A  +L +    N     K +
Sbjct: 629 ARTKLFLSYAVNRRGLNKPS 648


>gi|258622035|ref|ZP_05717063.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM573]
 gi|258625852|ref|ZP_05720727.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM603]
 gi|258581816|gb|EEW06690.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM603]
 gi|258585688|gb|EEW10409.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM573]
          Length = 678

 Score =  244 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 96/659 (14%), Positives = 219/659 (33%), Gaps = 123/659 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L+  L    +    +        M K       L  +   
Sbjct: 119 DQMALLKELTEKQLDGDKDLLRLLLSTISNWKNDMLTPQQAKAMAKGEQQ--QLFAHCFE 176

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  +    LDF+DLI+    LL+  +    +R +    I ++L+DE QDT+  Q+E+
Sbjct: 177 LYQKQMQSYNALDFDDLILLPVLLLRSSEE---VRQRWQNRIRYLLVDEYQDTNTSQYEL 233

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 234 VKLLVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPN--------L 275

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    +  S      +                 
Sbjct: 276 KLIKLEQNYRSTSRILRAANILIANNPHVYQKALFSELAEGEKL---------------- 319

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                               +   ++    A R+   I          ++      + +D
Sbjct: 320 -------------------KVILANNEDHEAERVTAEI---------IAHKFLNRTEYRD 351

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 352 YAILYRGNHQSRLIEKSL----TQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 407

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++    +               +H  +++
Sbjct: 408 AFLRIVNTPKREIGPATLEKLGSYANMRGKSLFAASFELGLEQHLSGRGLDNLRHFTEWL 467

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRNEQNS 543
             +   A+  +  +    ++   +            +     +  + +  ++ + + +  
Sbjct: 468 VAIADNAERGNTVEAVRSLVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 527

Query: 544 YSS-----LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                   L+E++  L       +   + + + V++MT+H +KGLE P V+L+     + 
Sbjct: 528 NPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGIL 587

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL+YVG+TRA
Sbjct: 588 PHQTSID-----------------------------------EENVEEERRLMYVGITRA 612

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             +L            +  + +    + +   +D   +  K   S  +          +
Sbjct: 613 QRELTFMVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKKKPVSQEERMVKGQAHIAN 671


>gi|160896003|ref|YP_001561585.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
 gi|160361587|gb|ABX33200.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
          Length = 705

 Score =  244 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 105/624 (16%), Positives = 187/624 (29%), Gaps = 125/624 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YEE       +DF+DLI     LLK       +R K  + + H+L+DE QDT+
Sbjct: 178 TALIMQRYEERLTAYQSVDFDDLIGMPMRLLKNHIE---VREKWQRLLGHVLVDEYQDTN 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+E+++ L            S     AVGD+ QSIY + GA    + +      +   
Sbjct: 235 ATQYELLKMLVG----------SRAHFTAVGDDDQSIYGWRGATLDNLKKLPVEFPQ--- 281

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST+ IL   + V                                
Sbjct: 282 -----LKVIKLEQNYRSTSAILRAANNVIQPNPK-------------------------- 310

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L+ + +     +  P +              +    A R    I ++        +    
Sbjct: 311 LYPKTLFSELGEGEPVRIV---------DCDTEEHEAERAVARIQSLRAASNPPPD---- 357

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               KD  +L R            R       I    +      D   IKDL A  R  +
Sbjct: 358 ---WKDFAILYRANHQAKPFEKALR----KASIPYKVSGGTSFFDRAEIKDLCAWFRLWI 410

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-------TVYEYIQKFANCGISKFQ 482
           + +DD +F+  + +P        + K+     + +         +               
Sbjct: 411 NNDDDPAFLRAIGTPRRGIGHTTLGKLGEFSSQHKLSMFGALFAHMLEAALPKKAHDSLL 470

Query: 483 HVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFL 533
              +YI++L + A+     +    F    L      Q       +E         + EF 
Sbjct: 471 EFGRYINDLEYRARHTLGAEQSRGFMLDWLKEIGYEQYLYDSEDSESVAAARWSNVLEFC 530

Query: 534 NFTLRNE------------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
           ++  +                   SL E+   +               + V + T+H +K
Sbjct: 531 DWMAQRAGGQIEDAAGTTTHTEVKSLLEVARNIALLS--TISEREKEQDMVILSTLHASK 588

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE P V LV     +                               +N     +     
Sbjct: 589 GLEWPHVMLVGVTEGMLPF------------------------KLDDDNGRQQKVSDETA 624

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              +E  RL+YVG+TRA   L +      +  +K  +     +                 
Sbjct: 625 QRLQEERRLMYVGITRARRSLAVSW----TKRRKKGREMVSTLPSRFIKEMGLDAATSRE 680

Query: 702 NSINKDEWIAYEWSTHHPENTPLE 725
           +   K   +  E++    ++TP +
Sbjct: 681 DPREKLRQLRAEFALKAQQSTPAD 704


>gi|118602136|ref|YP_903351.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena
            magnifica)]
 gi|118567075|gb|ABL01880.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena
            magnifica)]
          Length = 1053

 Score =  244 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 147/902 (16%), Positives = 299/902 (33%), Gaps = 138/902 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNI-----ITQEINKKSPDLKEKLKKS--QDEFIKIRDR 113
               E +  L    LT +   + ++        E+  +   + +  +      +  K+   
Sbjct: 262  ESLEVWKNLCQLCLTTQGKWRTSLNKNNGFPVELKTQKQAVIKIFQDLSSHQQLRKLLAG 321

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL-------DFEDLIINTNDLLKKRDVS 166
                     +   + + + +    + A  +  +L       DF  + ++ N  L +  V 
Sbjct: 322  VEQLPDVNFSTNQINILQDIAQVLKLAVIQLNILFDVNQTYDFIQVALDANQALDEHQVG 381

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                + +D ++ HILIDE QDTS  Q+ ++  L  ++ VG       +TLF VGD  QSI
Sbjct: 382  DVALF-LDNKVQHILIDEFQDTSATQFVLLEKLIINWQVGDG-----KTLFLVGDPMQSI 435

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F  ++    L+ +         A  K   ++L  +FRS+  ++   +K+FS     Q 
Sbjct: 436  YLFRQSQVGLFLQVRVQ-----GIANIKPKFLQLSTNFRSSESVVEGNNKIFSKIFPQQE 490

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
             +        H                      SQ N   E+  +              A
Sbjct: 491  DAFKGAIKYEH----------------------SQANFVDENENAIRFYPFAYKRYDFEA 528

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            +++   I N                  K+I++LVR R     I  + +       I    
Sbjct: 529  QKVLEIIQN---------------NPTKEIVILVRSRSHLDDIVSILK----RANIEFEA 569

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---- 462
                 L + L  +DL++L R +    D L+++ +L++P      +D+  +  Q       
Sbjct: 570  LKILPLKEDLFTRDLLSLTRALKHLGDKLAWLAILRAPWCGLLLEDLLVLSQQDERVIFD 629

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                 + +Q  +  G  + ++ +    ++++     S        +          S   
Sbjct: 630  LIQDEQVLQGLSENGQLRIRNFVHVFCDIVNQQSRFSFTKVLAFAINQL----APQSSLS 685

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
             +   +  +FL      E      ++ +   L+           + +  +++MT+H AKG
Sbjct: 686  VKRSMIKIQFLQIIHDCESVQQLDIETINQMLDGLY------APSVNARIKLMTIHEAKG 739

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE  +V +   G    ++          S       PI        ++  + L     + 
Sbjct: 740  LEFELVIIPGLGRMPQNNIPSIIHLQEFSNQSLLLAPIRSYTQLDDSHTYTYLKHIKSQQ 799

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             + E  RLLYV MTRA  ++ +    N SN+  ++  T+  ++   F +     K+  T 
Sbjct: 800  NKFETMRLLYVAMTRAKLEIHLLGTLNQSNQ--ASSNTFLKLLAPIFQHQFDKLKLSTTE 857

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                            P       +E+ K++  +  +  +  S                 
Sbjct: 858  DNQPLVQAPEFVRYIKPLEYDNLPDESKKKMDFQLSVDLQYKS----------------- 900

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                                G ++H   Q          K  I +   +        +  
Sbjct: 901  ------------------LLGTLLH---QYYEDSLFSPDKQSIRARLMECGVG--NMDID 937

Query: 823  NLLLSITRLLE----NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI 878
            + +  I  +L     +   +      + ++V V            +   ID++ I +  +
Sbjct: 938  SHINFIVNMLNLTKQDKHFSWLFKQRTSTQVEVE----FINDKHSV--IIDRLFIDEDTL 991

Query: 879  FIFEYKTHHHVPQE-----IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
            +I ++KT      E     I+     +  QL  Y+  L + Y +  + C L   S  ++ 
Sbjct: 992  WIIDFKTATKSNNESIAQFIQRQKIKYTQQLLSYKVALSE-YYSMEIKCALYCSSVQELI 1050

Query: 934  II 935
             I
Sbjct: 1051 EI 1052


>gi|283476651|emb|CAY72479.1| ATP-dependent DNA helicase RepA [Erwinia pyrifoliae DSM 12163]
          Length = 697

 Score =  244 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 107/646 (16%), Positives = 215/646 (33%), Gaps = 121/646 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K++  Q +      L++ +    +    + D         S      L  +  A
Sbjct: 136 DQLALLKDLTEQWLENDKNLLQQLVSTISNWKNDLMDPPRAAAGALSERD--KLFAHCYA 193

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K   VLDF+DLI+    LL++      +R +  Q I ++L+DE QDT+  Q+E+
Sbjct: 194 LYDKHLKSCNVLDFDDLILLPTLLLQRN---VDVRERWQQRIRYLLVDEYQDTNTSQYEL 250

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++  +              
Sbjct: 251 VKLLVG----------ARARFTVVGDDDQSIYSWRGARPQNLVLLQEDFPA--------L 292

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S                        
Sbjct: 293 QVIKLEQNYRSSERILKAANILIANNPHVFEKRLFS------------------------ 328

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                      E        +   +     A R+   I  +I    I         Q KD
Sbjct: 329 -----------ELGYGAELKVVTANHEDHEAERV---IGELIAHHFI------NKTQYKD 368

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + +   +        +I    +          IKDL+A  R + + +DD 
Sbjct: 369 YAILYRGNHQSRVFEKML----MQNRIPYHISGGTSFFSRPEIKDLLAYLRVLTNADDDS 424

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++            A  G+   Q    ++
Sbjct: 425 AFMRIVNTPRREIGSATLQKLGEWAMQRNKSLFTASFDVGLGQTLAGRGLESLQRFTHWL 484

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQ--- 541
            E+  +A+        D    +       +   S    E  +  ++    +     +   
Sbjct: 485 QEIARLAEREPVAAVRDLIRGVDYESWLFETSASPKAAEMRMKNVNTLFQWMTEMLEGSD 544

Query: 542 -NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 545 IDEPMTLTQVVTRFTLRDMMERGESDEESDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 604

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       ++  EE  RL YVG+TRA  
Sbjct: 605 QSSID-----------------------------------ENNVEEERRLAYVGITRAQK 629

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +L            +  +      + +   +D + +  +   S  +
Sbjct: 630 ELTFTLCRERRQYGELVRPEPSRFLLELPQDDLQWESERKVVSAEE 675


>gi|306815184|ref|ZP_07449337.1| ATP-dependent DNA helicase Rep [Escherichia coli NC101]
 gi|305851553|gb|EFM52007.1| ATP-dependent DNA helicase Rep [Escherichia coli NC101]
          Length = 673

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 99/668 (14%), Positives = 213/668 (31%), Gaps = 121/668 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    +          K       +  +  
Sbjct: 111 TDQVALLKELTDGLIEDDKLILQQLISTISNWKNDLMTPVQAAASAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------KRARFTVVGDDDQSIYSWRGARPQNLVLLSKDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +++L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVVKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IK+L+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKELLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L            +  +      + +   +D   ++ +   S  +          +  
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLK 664

Query: 720 ENTPLERE 727
                +RE
Sbjct: 665 AMMAAKRE 672


>gi|33603572|ref|NP_891132.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
 gi|33577697|emb|CAE34962.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
          Length = 689

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 99/710 (13%), Positives = 215/710 (30%), Gaps = 118/710 (16%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                   +   V   +  G       A  ++   +           S        +  +
Sbjct: 68  AAREMAERVKTLVDPKLAKGLTISTFHALGVRLLREEAAHAGLKPQFSILDADDAMSIIQ 127

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            ++      +  +++  +   ++  +                A       +   Y     
Sbjct: 128 ELLATTDRGRLREVQSIISLWKNALLTPDQAAAAAITPTEVEAV-----TVYRGYAATLA 182

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               +DF+DLI    +LL++ +    +R +    + ++L+DE QDT++ Q+ +++ LT  
Sbjct: 183 AYQAVDFDDLIRIPAELLERNEE---VRTRWQNRVRYLLVDEYQDTNVCQYRLVQLLTG- 238

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                          AVGD+ Q+IY++ GA  + + +                 +I+L  
Sbjct: 239 ---------VRAMFTAVGDDDQAIYAWRGATIENLAKLTTDYPN--------LKLIKLEQ 281

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS   IL   + V             S           G    + +            
Sbjct: 282 NYRSVQRILAAANNVIERNPKLFEKKLWSDL---------GHGEPIIVSPM--------- 323

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                            +     A  IA  +S             +R  Q KD  +L R 
Sbjct: 324 -----------------NGDEHEAESIAMKVSA---------ARFERQAQWKDFAILYRS 357

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + ++    R LK    I    +      D   ++D++A  R + + EDD +F+    
Sbjct: 358 NHQSRVLEQALRNLK----IPYTISGGQSFFDKAEVRDILAYLRLVANDEDDPAFIRAAT 413

Query: 443 SPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIA 495
           +P     +  +  +         ++   + +       A   +   +   +++  +   A
Sbjct: 414 TPKRGIGQGTLQTLGQYAAQRQCSLLAAVDEAGLESLLAPRQLEPLRTFAEFVRRIQWRA 473

Query: 496 QF--------------CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                               D  + I   +        R        + E   +  R  +
Sbjct: 474 GRGVEGQPARAPEPAGQILDDLLSAIQYERYLYDMLEERPAQTRWQNVLELTGWLKRKAE 533

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +L +L+  +       +       + V++ T+H +KGLE P V+L      +  H 
Sbjct: 534 EDGMTLFDLVQHVALVTMLERGE-EEEPDAVKLSTLHASKGLEYPHVYLAGVEEGLLPH- 591

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                      ++           +  +E  RL+YVG+TRA   
Sbjct: 592 ---------------------LGKDDEDSGDPARAAETLATRIQEERRLMYVGITRAQRS 630

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           L +         ++   R     + +    D +V++ + T +++  E + 
Sbjct: 631 LNLSWCKKRRRAREDVVREPSRFIEEMGLGDAKVQEDEATRAMSPKERLG 680


>gi|164687610|ref|ZP_02211638.1| hypothetical protein CLOBAR_01251 [Clostridium bartlettii DSM
           16795]
 gi|164603384|gb|EDQ96849.1| hypothetical protein CLOBAR_01251 [Clostridium bartlettii DSM
           16795]
          Length = 683

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 106/567 (18%), Positives = 207/567 (36%), Gaps = 107/567 (18%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE  K +   +DF+D++I T  LL+       +   +     +IL+DE QD + +Q+
Sbjct: 172 YNMYENYKDEIKKIDFDDMLIRTYYLLQNN---QEVLRIVQSVYKYILVDEFQDVNKVQF 228

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           EV++ +  +             +F VGDE QSIY F G+ P  +L+ K           +
Sbjct: 229 EVLKLIAGE----------NNNIFVVGDEDQSIYGFRGSRPDFLLKFKEYF--------K 270

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + L +++RS ++I+   +++ +  +N            +         G+V+    
Sbjct: 271 DAKEVRLDINYRSKSEIIGTANRLINKNQNRYNKVIKCDREEK---------GSVE---- 317

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                          +    DS  +       A +IA  I   +  D          ++ 
Sbjct: 318 ---------------YLIPKDSEDE-------AVQIAKDILERVQQDY---------VEY 346

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQE 432
            D  V+ R    +  +  +      D +I  V  D  + + DH A KD+++  R +L  +
Sbjct: 347 DDFAVIYRTNLQSRALVDVF----MDMRIPFVIRDAVVTIYDHWAAKDILSYLRLVLDPD 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
            +  ++ ++  P    S D I  +     + E  +            K    +  +   +
Sbjct: 403 SNQDWIRIINKPFRYISRDSINSV-----KDEKYFLNALITKCNLHQKQVKTLTDLEIDL 457

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV--LDEFLNFTLRNEQNSYSSLQEL 550
              +  +P +  + I       +  +    N  I    L E LN       ++++++ E 
Sbjct: 458 SYLKSLAPKNAISYIRSTLDYDKYILDYCMNRKIKPNGLIEILNEVES-SSSNFATIGEY 516

Query: 551 ISELEQYPPTIK-RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           +S +E+    ++    +   N V   T+H+AKGLE   V+++        H+    +   
Sbjct: 517 LSHIEKVKEELQENQKNKEVNGVIFTTMHSAKGLEFDNVYIIGVNDGTIPHEKSYDIED- 575

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      +       EE  RL+YV +TRA D+L I    N
Sbjct: 576 ---------------------------EEKADEQIEEERRLMYVAITRAKDRLCISCPQN 608

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +K S  R   ++        ++V+
Sbjct: 609 KYGKKVSKSRFIDEIEEPLNSELKQVR 635


>gi|82546132|ref|YP_410079.1| ATP-dependent DNA helicase Rep [Shigella boydii Sb227]
 gi|187733202|ref|YP_001882397.1| ATP-dependent DNA helicase Rep [Shigella boydii CDC 3083-94]
 gi|81247543|gb|ABB68251.1| rep helicase [Shigella boydii Sb227]
 gi|187430194|gb|ACD09468.1| ATP-dependent DNA helicase Rep [Shigella boydii CDC 3083-94]
 gi|320176021|gb|EFW51090.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae CDC 74-1112]
 gi|320185439|gb|EFW60208.1| ATP-dependent DNA helicase Rep [Shigella flexneri CDC 796-83]
 gi|332089063|gb|EGI94174.1| ATP-dependent DNA helicase Rep [Shigella boydii 3594-74]
          Length = 673

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 98/647 (15%), Positives = 209/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 111 TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
              +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 YYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 400 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 459

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 460 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 580 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 604

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 605 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 651


>gi|327479161|gb|AEA82471.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri DSM 4166]
          Length = 669

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 93/645 (14%), Positives = 205/645 (31%), Gaps = 125/645 (19%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
             +  + ++K  +   +++ I   +     +  K        A  +  HY+   K    +
Sbjct: 127 AGDDGADEIKNLIDSWKNDLILPDEALAKARGPKE-----QTAAIVYLHYQRTLKAYNAV 181

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF DLI+    L ++      I  K    I ++L+DE QDT+  Q+ +++ L        
Sbjct: 182 DFNDLILLPVKLFQEHPD---ILEKWQNRIRYLLVDEYQDTNASQYLLVKMLVGM----- 233

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST
Sbjct: 234 -----RNQFTVVGDDDQSIYAWRGARPENLMLLKEDYP--------SLKVVMLEQNYRST 280

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           + IL   + + +   +                         QLW ++    +        
Sbjct: 281 SRILKCANILIANNPHVFEK---------------------QLWSEMGHGDEI------- 312

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   + +  +      R+A  I              +R     D  +L R      
Sbjct: 313 -------RVIRTRNEEAECERVALEI-------LTEHLRTQRP--YSDFAILYRGNYQAK 356

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           L+    +     ++I    +          +KDLM+  R +++ +DD +F+ ++  P   
Sbjct: 357 LMELKLQ----HHQIPYRLSGGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVINVPRRE 412

Query: 448 FSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSP 500
                + ++         ++Y    +        +    +      ++  +        P
Sbjct: 413 IGSTTLERLGNYASERGISMYAAADEIGLGAHLDSRYAERLARFKHWMDNVRQQCAQNDP 472

Query: 501 HDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT---LRNEQNSYSSLQELIS 552
                 ++              ++      +  +   ++     L  +++   ++++ I 
Sbjct: 473 IAAIRSMVMDIDYENWLRQNASSDKVADARMGNVWFLVDALKNTLEKDEDGDMTIEDAIG 532

Query: 553 ELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           +L        ++        V++MT+H +KGLE P V+++    ++  H           
Sbjct: 533 KLVLRDMLERQQEEEEGAEGVQMMTMHASKGLEFPSVYIIGFEEEILPH----------- 581

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                      ++  T EE  RL YVG+TRA   L +   +   
Sbjct: 582 ------------------------RSSIEADTIEEERRLAYVGITRAKRNLALTFAAKRK 617

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
              +    T    + +    D   +  +      K        + 
Sbjct: 618 QYGEVIDCTPSRFLDELPPEDLVWEGQEDAPVEVKAARGNDALAA 662


>gi|332184470|gb|AEE26724.1| Exodeoxyribonuclease V beta chain [Francisella cf. novicida 3523]
          Length = 1197

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 143/915 (15%), Positives = 290/915 (31%), Gaps = 141/915 (15%)

Query: 90   NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
                 ++  ++K  +D+++KI+D     K F            +   + +AK++  VLDF
Sbjct: 274  RDDIAEVFGEIKDLKDKYLKIKDLDEYKKQFDVAQFIKQACFKIRQDFAKAKEQKGVLDF 333

Query: 150  EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT--------- 200
            +DLI      +KK      +   + ++    LIDE QDT   Q+E++ ++          
Sbjct: 334  DDLITKLCHSVKKSPD---LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPQSNKLPCQ 390

Query: 201  -EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                            L  +GD KQ+IY F G +    L+ K              +   
Sbjct: 391  SATANPSSQRRIDDLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCSND--------NQWS 442

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            +  ++RST +++   +++F   +     +    T I         V      ++     D
Sbjct: 443  MDTNWRSTREMIKAYNRLFYKQDYQPEEAGQIGTNIFSDGIGYQLVKASPNADKKAKDFD 502

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
             +  P    +    +   +    S L+   A  I  ++ +  +            DI +L
Sbjct: 503  DKLKPINYFYYQVAEDDNKSDIDSNLSVWTANEIVRLLNSKKVVE---------SDIAIL 553

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            V       +I    +  K     SV  + R  +      K+++AL   I   E+      
Sbjct: 554  VENGTQAKIIQKALQAKKLS---SVYLSQRDNVYHSQEAKEILALIEGINDLENKSMLKR 610

Query: 440  MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
             L + L   S D   +   +                  +S +   I+    L        
Sbjct: 611  ALSTSLLGGSADKFIRYIDEND----------------VSAWDEEIEKAKSLRQQWHKYG 654

Query: 500  PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
               F   I+     ++          I  L E +       ++    ++    +L     
Sbjct: 655  FMAFIIQIIHENFIQRSDSKERVITNILHLAELIKVAENKYKHPNQLIKWYRQQLNSSAT 714

Query: 560  -TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
               +    ++ N ++I+T+H +KGLE  VVF+            +         N    +
Sbjct: 715  SEGELRLESDDNLIKIITIHGSKGLEYSVVFIPFASYVSSKKFQVSDFSKYYDKNIKQTV 774

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                            +   +K    EE  RL YV +TRA  +  I        +   + 
Sbjct: 775  YKIGKD--------DSIKPQIKNEVIEELMRLFYVAVTRAEHRCYIGVAKYQDKKSDISF 826

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP--------------ENTPL 724
            R+      D   +D  ++KI+   +   ++ +  + +T H               +    
Sbjct: 827  RSPLARFLDYQKDDNWLEKIQNITANPTNQSLLIDIATSHSYESENLITNDQFDHDALQN 886

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDIN---EPYILNPSTIDTKGKT--NLESLLSDNQT 779
             +   I +L+++           K+ +         + S  D+  K+   LE   + ++ 
Sbjct: 887  LKANDINKLLNDSWEMLSFSKISKSKVENTALEKENDESEDDSAQKSQQELEFRFTASKG 946

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL------- 832
             + G I+H +L+          +N +     +  K+  A+++ NL + +   L       
Sbjct: 947  ADIGNILHNVLEHTDFSLGKIDENLLQEQMDRY-KVVAAEDFDNLKVWLEECLVASIPFI 1005

Query: 833  --------------------ENPMMTTAMSCDSYSEVSVSGKINCP---KKDII------ 863
                                ++  +    +  +  E      I      KK+II      
Sbjct: 1006 ETKTFSSNDNIQYGLFDINHKDFCLKDIPNTKTLKEAEFYFPIANEKLYKKNIIEILAEY 1065

Query: 864  ------------------ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT------ 899
                              + G ID I       ++ +YK+++      ++   T      
Sbjct: 1066 RNQTIDYDEFASQKIFGMLHGFIDLIFEHDGKFYVADYKSNYLGDTLEDYNQQTMQEKNQ 1125

Query: 900  ---HIAQLSIYEKIL 911
               +  Q  IY   L
Sbjct: 1126 SSFYDLQYLIYSVAL 1140


>gi|289667974|ref|ZP_06489049.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 658

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 104/723 (14%), Positives = 225/723 (31%), Gaps = 146/723 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +          I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRI-RGDGADGLTICTFHALGLK--FLQIEHAAAGLKRGFSIFDSDDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMHGAKPDAIEDAKNLISRAKNAGLSPEQAMAAARSTREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L   Y+        +DF+DLI     +L+  +    I     + I ++L+DE QD
Sbjct: 162 --AASLYERYQARLTTFNAVDFDDLIRLPVQILEANED---IVMGWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  I+ +         G 
Sbjct: 310 IRVW--------------------------ECRDSEHEAEKVAAEIAFL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    + L+    +           +   +KD+++  R 
Sbjct: 335 AKQVPWSDFCILFRGNFQSRPLEKALQLLR----VPYHLTGGTAFLERQEVKDVLSWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISK 480
           I++ +DD +F+  ++SP        + ++                    +Q       + 
Sbjct: 391 IVNPDDDAAFLRAVQSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + ++   +      +   ++           ++  +E         LDE    
Sbjct: 451 LSAFTDILRDMREHSSSMPAGELVRMLAEKSGLLNDLRNQSKDETGFQRRKRNLDEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     +S  +L ++L       +       N+VR+MT+H +KGLE   VF+V   
Sbjct: 508 AEWFEGGPRGASASDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                      ++   +E  RLLYVG
Sbjct: 565 DGVLPHEVSL-----------------------------------EEGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA DQL +             +     ++D +       +    +       +     
Sbjct: 590 ITRAKDQLWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASAG 649

Query: 712 YEW 714
              
Sbjct: 650 LAA 652


>gi|205355847|ref|ZP_03222616.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346281|gb|EDZ32915.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 691

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 195/539 (36%), Gaps = 92/539 (17%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKL---KKSQDEFIKIRDRFNTYKMF--KSTLASLTLA 130
                 K++I  +      D+ + +   K        + +  N  K    +        A
Sbjct: 114 DTKKIIKDLIHDKNKDNVYDIIKYISYCKNEGKRVSNVFEDLNLLKEHNFEKYQNEYKFA 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ 
Sbjct: 174 N-YYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNT 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +     
Sbjct: 230 LQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN---- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS   IL   + + S  E   G +                      
Sbjct: 276 ----VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKT---------------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++   +     ++     + L            IA  +  ++ +           
Sbjct: 310 --LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKLLNSG---------- 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++AK+I +L R    +  I           +IS          + L IKDL++  R IL+
Sbjct: 347 VEAKEIAILFRVNALSRAIEEAF----MKKQISYKLLSGMRFYERLEIKDLISYLRLILN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKF 481
             DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++ 
Sbjct: 403 PSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQNEA 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I+ IH L          D    +   K    +     G+E I  LDEF        +
Sbjct: 463 NIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIRNLDEFYANLREKLK 520

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL++L+SE+                 V +M++H +KGLE   VF++      F 
Sbjct: 521 EDPKASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFP 575


>gi|15640197|ref|NP_229824.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121587549|ref|ZP_01677315.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 2740-80]
 gi|147674491|ref|YP_001218439.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395]
 gi|227080400|ref|YP_002808951.1| ATP-dependent DNA helicase Rep [Vibrio cholerae M66-2]
 gi|229507018|ref|ZP_04396526.1| ATP-dependent DNA helicase Rep [Vibrio cholerae BX 330286]
 gi|229509395|ref|ZP_04398878.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33]
 gi|229516342|ref|ZP_04405790.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC9]
 gi|229606533|ref|YP_002877181.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MJ-1236]
 gi|254851295|ref|ZP_05240645.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MO10]
 gi|255743986|ref|ZP_05417940.1| ATP-dependent DNA helicase Rep [Vibrio cholera CIRS 101]
 gi|298501306|ref|ZP_07011102.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MAK 757]
 gi|9654570|gb|AAF93343.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548187|gb|EAX58257.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 2740-80]
 gi|146316374|gb|ABQ20913.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395]
 gi|227008288|gb|ACP04500.1| ATP-dependent DNA helicase Rep [Vibrio cholerae M66-2]
 gi|227012025|gb|ACP08235.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395]
 gi|229346768|gb|EEO11738.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC9]
 gi|229353710|gb|EEO18647.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33]
 gi|229356123|gb|EEO21042.1| ATP-dependent DNA helicase Rep [Vibrio cholerae BX 330286]
 gi|229369188|gb|ACQ59611.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MJ-1236]
 gi|254847000|gb|EET25414.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MO10]
 gi|255738251|gb|EET93642.1| ATP-dependent DNA helicase Rep [Vibrio cholera CIRS 101]
 gi|297539966|gb|EFH76031.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MAK 757]
          Length = 671

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/664 (14%), Positives = 222/664 (33%), Gaps = 135/664 (20%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRLLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +        M K       L  +    Y++  +    LDF+DLI+    LL+  +    +
Sbjct: 146 MLTPPQAKAMAKGEQQL--LFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKAL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S      +                                     +   ++    A R+
Sbjct: 303 FSELAEGEKL-----------------------------------KVILANNEDHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I          ++      + +D  +L R    + LI           ++    +  
Sbjct: 328 IAEI---------IAHKFLNRTEYRDYAILYRGNHQSRLIEKSL----TQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++ 
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFT 434

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               +   +++  +   A+  +  +    ++   +          
Sbjct: 435 ASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSA 494

Query: 520 --RFGNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEV 572
             +     +  + +  ++ + + +          L+E++  L       +   + + + V
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V+L+     +  H+                               
Sbjct: 555 QLMTLHASKGLEFPYVYLIGAEEGILPHQTSID--------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +   EE  RL+YVG+TRA  +L            +  + +    + +   +D
Sbjct: 588 --------EENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDD 639

Query: 693 ERVK 696
              +
Sbjct: 640 IEWE 643


>gi|224437627|ref|ZP_03658580.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
 gi|313144079|ref|ZP_07806272.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
 gi|313129110|gb|EFR46727.1| DNA helicase II [Helicobacter cinaedi CCUG 18818]
          Length = 698

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 105/606 (17%), Positives = 199/606 (32%), Gaps = 126/606 (20%)

Query: 82  KNIITQEINKKSP--DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           K  I + ++K  P       +   ++ F+  ++        +       L   + A YE 
Sbjct: 123 KKAILKSLSKALPVSHFDSYISNMKNSFLSPQEAAAYAHSPE-----YKLMNRIYAEYES 177

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             +K  +LDF+DL+  T  +L +    + I  ++ Q   +I++DE QDT+ +Q+++++SL
Sbjct: 178 YIQKKNLLDFDDLLYLTYKILSQ---RSDIAKEMSQRYQYIMVDEYQDTNELQYKILKSL 234

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                      ++   L  VGD+ QSIY + GA+   +LR  +             + I+
Sbjct: 235 C----------TTHNNLCVVGDDDQSIYGWRGADIGNILRFAKEF--------SGATTIK 276

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS+ +IL   + + +      G +  S                            
Sbjct: 277 LEENYRSSEEILQAANALIAHNTERLGKNLKSVK-------------------------- 310

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                     +     + +    +  A  +A  I+ +                  DI +L
Sbjct: 311 ---------GSIQAVRVIENDDEAQEATFLAKEIARLCENGE----------NPSDIAIL 351

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  I       K    I           +   IKDL++  R I++ +DD SF+ 
Sbjct: 352 FRVNALSRSIEESFNRFK----IPYKLIGAVRFYERAEIKDLLSYLRLIVNADDDFSFLR 407

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIH 493
           ++  P     +    K+               +       A+ G   +  ++K   +L  
Sbjct: 408 IINRPKRGIGKVTQSKLEQLSQSKGLSCLACLEQYPLESKAHIGEKAYTALVKLQKDLSK 467

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELIS 552
                   +    +          +     E    + EF          N  ++L E ++
Sbjct: 468 WRNMTDLSEMIEDMQENLIFEFSPLDEVDREG--NIYEFYGMFKDYVIHNPTNTLDEFLN 525

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           +L    P+      A  + V  M+VH+AKGLE   ++++      F     +        
Sbjct: 526 DLALASPS----DEAVGDCVSCMSVHSAKGLEFKHIYVIGFEEGFFPLHRGEN------- 574

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                           EE  RL YV  TRA + L +C   +   
Sbjct: 575 -----------------------------DELEEERRLGYVAFTRAKEHLSLCYSKSRLY 605

Query: 673 EKKSNQ 678
             K   
Sbjct: 606 RGKREW 611


>gi|163816456|ref|ZP_02207820.1| hypothetical protein COPEUT_02645 [Coprococcus eutactus ATCC 27759]
 gi|158448156|gb|EDP25151.1| hypothetical protein COPEUT_02645 [Coprococcus eutactus ATCC 27759]
          Length = 768

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 109/598 (18%), Positives = 187/598 (31%), Gaps = 124/598 (20%)

Query: 100 LKKSQDEFIKIRDRFN-----TYKMFKSTLASLTLAKYLNAH------YEEAKKKNCVLD 148
              ++D    ++ +            +  LA    A+ +         YE+ KK    LD
Sbjct: 189 FDSARDHITALKSQMLHIPYLAEIGNEKLLADYEKAEKVEDKVFLGYLYEQ-KKVYG-LD 246

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           ++DLI     +L+  +     R K  + + ++++DE QD S  Q+ +   L+        
Sbjct: 247 YDDLITIALYILQTDETK---RIKWQERMMYVMVDEFQDVSNSQYALAEILSGY------ 297

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                R LF VGD  Q+IY++ GA+ + +L              +    I L +++RST 
Sbjct: 298 ----HRNLFIVGDPDQTIYTWRGAQIEYILEF--------DETHENTRTIFLDMNYRSTP 345

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
           +IL V + +    +            + HR     + G   ++    +  D         
Sbjct: 346 EILAVSNSLIEKNKKR----------LPHRLEAYKESGRRPIYIHSRTTGD--------- 386

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                            A+ +   I  ++                 ++ VL R    +  
Sbjct: 387 ----------------EAQWMTSEIQRLVSEG----------ASYNEMAVLYRSHFVSRN 420

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
           I           KI               IKD++A  R I+   DDLSF  ++  P  NF
Sbjct: 421 IEESF----IKAKIPYTLYSGMEFYKRKEIKDVLAYLRMIV-YSDDLSFRRVINEPKRNF 475

Query: 449 SEDDIFKIC-TQRHETETVYEYIQKFANCGISK---FQHVIKYIHELIHIAQFCSPHDFF 504
            +  +  +         ++Y  +         K       +  I       +  S  D  
Sbjct: 476 GKKRMALVKAYAESHRCSLYNGLLDILEDKTIKSTGAAAFVDTIEAFKKTYKEKSLSDLV 535

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           T +L               E +D L EF       E+ S      L   L+         
Sbjct: 536 TEVLDQTGYEAMLRQSGEQERLDNLAEFKQSVDEYEKTSGEE-NTLEEYLQSIALYTNND 594

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              +   V +MTVHTAKGLE P VF+      +F  KH+     +               
Sbjct: 595 REKDKETVSMMTVHTAKGLEFPYVFVCGMNEGIFPSKHVDTEERLEEERR---------- 644

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                    + YV  TRA   L I      + ++     + +
Sbjct: 645 -------------------------MAYVAFTRAEKALYISDAEGLNYDESFRYPSRF 677


>gi|33595892|ref|NP_883535.1| putative nuclease/helicase [Bordetella parapertussis 12822]
 gi|33565971|emb|CAE36522.1| putative nuclease/helicase [Bordetella parapertussis]
          Length = 1134

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 141/1002 (14%), Positives = 275/1002 (27%), Gaps = 143/1002 (14%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYV----SLSMETGNPTILKKAQTLQQASQ 58
            +R GL  +   E +  +L  L        ++ +     L+      +   +   LQ    
Sbjct: 207  DRDGLEASL-AEALEHELDSLCGQLPRGWSQALCGPARLAAAALAGSGDARLAALQDWDA 265

Query: 59   TQCIE----ERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKEKLKK------ 102
                     +++  L+   LT     +      KN+               L        
Sbjct: 266  PLPPMAEALDQWRALAHLLLTGTGALRSPKGVNKNLGFPAGCDHKEPFTAWLAACDGGAP 325

Query: 103  ---SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
               +      + D + +   +    A LT      A       +   +DF ++       
Sbjct: 326  WVRALAAVRDMPDAYFSDAQWDVLSAQLTTLALSVAQLRVQFARAGEVDFIEIAQRAAYA 385

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            L   D    +  K+D  I H+LIDE QDTS  Q +++ +LT  +  G       RTLF V
Sbjct: 386  LGSGDDPGELLLKLDASIRHLLIDEFQDTSQGQIDLLATLTAGWQDGDG-----RTLFLV 440

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD  QSIY F  AE    L+              +   ++L  +FRS   ++  V++VF+
Sbjct: 441  GDPMQSIYRFRKAEVGLFLQVAEQ-----GVGQIRPGFLQLTDNFRSQGGVVDWVNRVFA 495

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                                +     G +           +   P +             
Sbjct: 496  QLLPR---------------ANDADSGAIAYSPSTAFHETA---PGEAVRFHPAWECGDA 537

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            +SA   A  I   +  ++        G +       + +LVR R                
Sbjct: 538  ASAERQAEDI---VVGLVRAALAEHEGSRHP-----VAILVRARSHLGS----LTRRLAQ 585

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              I     +   L     + DL+ L R +    D L+++ +L++P    +   + ++   
Sbjct: 586  EGIPCRAVELVPLGLRPVVADLVQLARALAHPADRLAWLSVLRAPWCGLTLTSLQRLFGA 645

Query: 460  RHE--------------------TETVYEYI-------QKFANCGISKFQHVIKYIHELI 492
              +                      ++++         Q  A     + + V   + +  
Sbjct: 646  DQQTPVPTLLERALRGAARSEGGQGSLFDAPAPGCLAEQALAPDEYRRLRAVAAILLDRA 705

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            + A       +   +     G   +         + L + +     +       L   ++
Sbjct: 706  NDAGLLPLAAWLEQLWRRLGGPGLYPGSSAASDAESLFQLIERLAPHGGLDAGLLDTAVA 765

Query: 553  ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
             L           +     V IMT+H +KGL+   V L               +    S 
Sbjct: 766  RLFAA-----PQATGEQGTVEIMTMHKSKGLQFDTVILYGLHRAPR-GDQAPLVRFEQSG 819

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                  PI        + +   L     +    E +RLLYV  TRA  +L +  H     
Sbjct: 820  GRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDRLLYVAATRARQRLHLVAHVAVDA 879

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
                                    +   + S+    W+                    + 
Sbjct: 880  ASGQ-------------------ARTPASASLLGRLWLHLPVPQPPDVAQDQAAATGEQP 920

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT---FNRGLIIHKL 789
             +  + + +   + + +          +     G    E      +       G + H  
Sbjct: 921  ALVGEPLRRLAGAGLASLAARTLPREAAAGAYGGGQGAEHPSWQLEAGYDAAVGTLAHAW 980

Query: 790  L--------QVIFTLPEHKRKNFITSYCTKNA--KLWPAKEYKNLLLSITRLLENPMMTT 839
            L        Q         R   +    T+            + +L ++   L++     
Sbjct: 981  LARIGGDGPQHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDERGRW 1040

Query: 840  AMS-CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH-----VPQEI 893
             +    +  E      +      + +   ID    ++    I +YKT          Q  
Sbjct: 1041 LLGQARARREWP----LIDAAGRVSV---IDLALSTEDGWLIVDYKTGRPHEHETPEQFA 1093

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              +   H  QL  Y   +      +     L +        +
Sbjct: 1094 IRMRQRHGEQLMRYCAQVTALD-GRPARAALYFPRARAWIDL 1134


>gi|281420135|ref|ZP_06251134.1| putative UvrD/REP helicase domain protein [Prevotella copri DSM
            18205]
 gi|281405935|gb|EFB36615.1| putative UvrD/REP helicase domain protein [Prevotella copri DSM
            18205]
          Length = 1070

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 130/817 (15%), Positives = 263/817 (32%), Gaps = 97/817 (11%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILID 183
            L L   ++    E  ++        L+ +T  LL    K   S +I  KI  +++HI+ID
Sbjct: 341  LRLLGSIDKKVREMNREANRF----LLSDTQTLLNSLIKDSDSPFIFEKIGTQLDHIMID 396

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS IQW+  + L E+    ++  +       VGD KQSIY +   + + +    + 
Sbjct: 397  EFQDTSTIQWKNFKVLLEETMSREDAGN-----LIVGDVKQSIYRWRSGDWRLLNNIDKE 451

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              K A    +K SI  L  ++RS  +I+   +  F+     +            +     
Sbjct: 452  FNKSA----KKVSIETLGTNYRSDRNIIEFNNAFFTEAVKLEIEDLKDIGPEECKQLENA 507

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 Q      S  +          +     L  E+    + +    T+  ++      
Sbjct: 508  YSDVCQQVPVHHSNPNG---------SISIHLLGGENIEDRMMQTTLDTVDKLVERGVPC 558

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
            +           I +LVR  ++   I        N     +V ++ F L    A+  L+ 
Sbjct: 559  NK----------IAILVRSNRNIQDIAEYFM---NHSDYPLVSDEAFRLDASQAVCTLVN 605

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
                ++   D+++                                          S   +
Sbjct: 606  ALYILVHPNDNIAL-------------------------------ATLNKFCDTYSVAGN 634

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
            + + +             D    +    K   +            +  F +   +   ++
Sbjct: 635  MPEQLLTNRSEYLEMPLFDLTERLFAELK-LGEIKDMIKQTA--YICTFYDCLSKYLTDN 691

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S +   + E +            +   +R +T+H +KGLE   V +     Q+     I
Sbjct: 692  SSDITGFLKEWDNRIHEKSIHSDGDGG-IRFLTIHKSKGLEYDHVIMPYCDWQLEKANTI 750

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                     N+ P +PI       + +I      H       +   LLYV  TRAS  LI
Sbjct: 751  WCTPQEAPYNELPLVPIDFSAKLMKQSIYEADYNHEHLQNIVDNLNLLYVAFTRASHNLI 810

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH-PENT 722
            +      S  + +   +  D V      ++   K+    S  K + I++ ++  + P+++
Sbjct: 811  VIGKRANSAYRSAIIESVLDKVASRLEANDVKMKLTGIGSDAKTDDISFCYNEIYVPDSS 870

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
                E+    ++     P ++   +  ++ E      S          E+          
Sbjct: 871  KKSNEKKDTNVLSAYSQPLEIKINVTPEMPE---FRQSNQSRDFIKRDETEEQQKFYIKM 927

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY-KNLLLSITRLLENPMMTTAM 841
            G I+H L   I T+      +        +  L+      + +   I + LE+P +    
Sbjct: 928  GTILHNLFSTIRTV---DDIDGALKQLELDGLLYDQDLTPEKIKEMIRKRLESPKVAKWF 984

Query: 842  SCDS--YSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPY 898
              +    +E S+   +      +    R D++   S+    + ++K              
Sbjct: 985  DKELTILNECSI---LTVENGKVA-EYRPDRVMQNSKNETIVVDFKFGK--------QKV 1032

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             H  Q+  Y  +L+    +  +   L YV   ++  +
Sbjct: 1033 EHHEQVRKYIGLLRSM-GHHRVKGYLWYVYPNRIVEV 1068


>gi|218130936|ref|ZP_03459740.1| hypothetical protein BACEGG_02538 [Bacteroides eggerthii DSM 20697]
 gi|217987280|gb|EEC53611.1| hypothetical protein BACEGG_02538 [Bacteroides eggerthii DSM 20697]
          Length = 1087

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 122/842 (14%), Positives = 269/842 (31%), Gaps = 75/842 (8%)

Query: 100  LKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L +  +     ++R  N+ ++    L  L L  +++       +++       L+ +T+ 
Sbjct: 312  LLQDAERLRPQKNRTINSCRLSLQHLNKLQLLNHIDEEVRTLNREHNRF----LLSDTSA 367

Query: 159  LLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            LL        S+++  KI   I +++IDE QDTS +QW+  R L  +             
Sbjct: 368  LLHKLVHEGDSSFVFEKIGANIRNVMIDEFQDTSRMQWDNFRLLLLEGLS------QGAD 421

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
               VGD KQSIY +   +   +        +          +  L ++ RS  +++   +
Sbjct: 422  SLIVGDVKQSIYRWRNGDWGILNSLGSTRSESQLPFPFPVRVKTLKINRRSETNVINFNN 481

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            ++F+   +                 +             V+Q   + + +     S+ + 
Sbjct: 482  RLFTAAVDHLNTLYLEELKEECFPLKEAYA--------DVAQESPKTDNKGYVKVSFIEP 533

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              ++S A      +   +  ++             ++  DI +LVRK K+ P I      
Sbjct: 534  DEEQSYAEKTLSALGEEVQRLLSAG----------VKLNDITILVRKNKNIPSIADYF-- 581

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
               +  + +V ++ F L   LAI  L+   R++ + E+ ++   ++ +     S +   +
Sbjct: 582  -DKELHLPIVSDEAFRLDASLAICMLIDALRYLSNPEEKIARASLIANYKLQTSYERGTE 640

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                       ++ +       +      I  + EL         ++    +        
Sbjct: 641  TGRTGGNPADWHQLLTADVATVLP--AEFISRMDELR----LMPLYELLEELFTLFN--- 691

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
              +   G +    L  F +      Q++ S L   I   ++     K   S   + +RI 
Sbjct: 692  --MGSIGKQ-DAYLFAFFDAVTEYLQSNSSDLDGFIRYWDET-LCSKTIPSGEMDGIRIF 747

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSH--KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            ++H +KGLE   V +     ++ +     +       S  +   +           ++  
Sbjct: 748  SIHKSKGLEFHTVLIPFCDWKLENETYNQLVWCTAPESPYNSIDLVPVNYSFTMAESVYR 807

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +     +   LLYV  TRA   LI+    +               V  +     
Sbjct: 808  QDYLDERLQLWVDNLNLLYVAFTRAGKNLILWSKKDQKGTMAELLSAALPRVAQAGEGSW 867

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                         ++      +    E +P     T  +++++              +  
Sbjct: 868  N----------EDEKIYESGTTCPSEEKSPHSAGNTESKVVNKLAQKPVKLPVHMESMRH 917

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                  S         ++   S  +  NRG ++H L   I T  E    + I        
Sbjct: 918  DIEFRQSNRSADFIAGVDEAESSQRFINRGRLLHTLFSAIET--EEDIDDAINRLV-FEG 974

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873
             +   +  + +     R    P +    S      +     I   +   + + R D++ +
Sbjct: 975  VIGRTETEEEIRELTHRAFSQPQIKDWYSGTWQ--LFNECDIIWQENGELRNRRPDRVMM 1032

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS-YPNKSLVCLLIYVSEPKV 932
                I + ++K               +  Q+  Y ++L    Y   ++   L YV E ++
Sbjct: 1033 RNGTIVVVDFKFGKPS--------KKYNKQVQGYIELLVRMGYDANAISGYLWYVEE-EI 1083

Query: 933  FI 934
              
Sbjct: 1084 IE 1085


>gi|332084974|gb|EGI90156.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 155-74]
          Length = 654

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 99/647 (15%), Positives = 210/647 (32%), Gaps = 121/647 (18%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++                 +  +  
Sbjct: 92  TDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERD--RIFAHCY 149

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ +    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 150 GLYDAHLKACNVLDFDDLILLPTLLLQRNEE---VRERWQNKIRYLLVDEYQDTNTSQYE 206

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L            S      VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 207 LVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 248

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 249 LKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 285

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 286 ------------ELGYGTELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 324

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 325 DYAILYRGNHQSRVFEKFL----MQNRIPYKISSGTSFFSRPEIKDLLAYLRVLTNPDDD 380

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHV 484
            +F+ ++ +P        + K+        ++++                   +++F H 
Sbjct: 381 SAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHW 440

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           +  I  L       +  D    +       +   S    E  +  +++  ++        
Sbjct: 441 LAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGS 500

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E +   +L ++++         +       ++V++MT+H +KGLE P V++V        
Sbjct: 501 ELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLP 560

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   +E  RL YVG+TRA 
Sbjct: 561 HQSSID-----------------------------------EDNIDEERRLAYVGITRAQ 585

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            +L            +  +      + +   +D   ++ +   S  +
Sbjct: 586 KELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 632


>gi|115377513|ref|ZP_01464713.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|310820075|ref|YP_003952433.1| ATP-dependent DNA helicase, uvrd/rep family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365453|gb|EAU64488.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|309393147|gb|ADO70606.1| ATP-dependent DNA helicase, UvrD/REP family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 688

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 105/676 (15%), Positives = 220/676 (32%), Gaps = 122/676 (18%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A+ L++         +F++  +    Q    ++ +   +++ ++ D ++ L         
Sbjct: 93  AEMLREDIHRLGWPRKFAI--ADMGDQLALIRRAMRDHKVDDRAFDARKVLTLISKAKNS 150

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +     +          +   +  +Y+ A K    +DF+DL++    LL++ +  +  
Sbjct: 151 GHEPTPKPEGMGDDYDL--ITHLVYPNYQLALKAQGSVDFDDLLLLPARLLREHEDLST- 207

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             K  +   ++L+DE QDT+L Q  ++R L              R + AVGD+ Q+IYS+
Sbjct: 208 --KYTRRFRYLLVDEFQDTNLAQMNLLRLLAGKV----------RNVCAVGDDDQAIYSW 255

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GAE + +L+                  + L  ++RS   +L   + V +     +    
Sbjct: 256 RGAEVRNILQFDSHFP--------GSREVRLEQNYRSMQVVLDAANAVIAKNPERKAKRM 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                                          +   ++    +  +   +       AR +
Sbjct: 308 W----------------------------TDRLGGERVKVVTCPNEEEE-------ARFV 332

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A+ I   +             + A DI VL R    +  +  + R       I       
Sbjct: 333 AHEIQKQMALG----------VAADDIAVLYRTNGQSRPVEEMLRE----KGIGYEVVGG 378

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               D   +KD++A  + I +  D++S + ++  P     +  + ++    R +  +++ 
Sbjct: 379 SEFFDRREVKDVIAYFKVIANPRDEVSLLRIVNVPARGIGDVTMERLHAHARADGISLWA 438

Query: 469 YI------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
            +      +        K    ++ I     + +          +L     R+   +   
Sbjct: 439 AMGRSQGYEDLPAGAAEKVGEFLQLIERYRGLFEEGRLAQVTRQLLEEIGFREATRALAP 498

Query: 520 --RFGNEVIDVLDEFLNFTLRNEQNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIM 575
                ++ +  +D  LN     E+      SL   ++ L       +      H  V +M
Sbjct: 499 SISSADKKLKSVDHVLNSLESFEKREGPKASLLTYLNRLSLDTRQEEEEVPGGHRRVTLM 558

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH +KGLE  +VF +     +  HK ++                               
Sbjct: 559 TVHASKGLEYRLVFFIGMEEDLMPHKGMQGEP---------------------------- 590

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    EE  RL YVG+TRA + L + + +      K    T    + D        
Sbjct: 591 ------QNLEEERRLCYVGITRAKELLYLTRAAIRVKRGKEVPCTPSRFLEDLPPEVVEK 644

Query: 696 KKIKLTNSINKDEWIA 711
             +    +    E   
Sbjct: 645 VDLAAPRTGAPTEQER 660


>gi|312194644|ref|YP_004014705.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311225980|gb|ADP78835.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 1243

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 124/1069 (11%), Positives = 281/1069 (26%), Gaps = 197/1069 (18%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            +  G     +Y      L    +     +    +L        +           + +  
Sbjct: 230  DAVGEPAVSTYNSFASRLVAD-HALRLGLEPDCALLPAAARYQLAANVARGYP-GRIEAF 287

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSP-----DLKEKLKKSQDEFIKIRDRFNTY 117
                + L S  +       ++++              D+   L ++           +  
Sbjct: 288  TGSLAALVSAVVALDGQCGEHLVDPAELIAFDRRWLADVLAALDEAAARPRTATLTADLR 347

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            ++ ++    + LA  +  +  EA+++  +LD+ D I    +L ++      +   + ++ 
Sbjct: 348  RLARTARRRIELAGLVVEY-REARRRRELLDYGDQIRLAAELAER---VPEVGDLLRRQF 403

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              +L+DE QDTS+ Q  ++  L                + AVGD  Q+IY + GA    +
Sbjct: 404  QVVLLDEYQDTSVAQRRLLAGLFG----------GGHPVTAVGDPAQAIYGWRGASVGNL 453

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
             R     ++     G    + +L ++ RS   +LT+ + V +                  
Sbjct: 454  RRFPEHFRRL---GGDPAQVHQLTVNQRSGGRLLTLANAVAAGLPV-------------- 496

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                     +V L  +       +                  +S +  A  +A  ++  +
Sbjct: 497  ------DARSVTLRPRPAVALAGETIVAL------------HTSWAEEAAWLAGQLAARL 538

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               +     +          VL R   D P +            + V       L     
Sbjct: 539  RAASPGDPREPGP----SCAVLARSWADVPALVDALGA----AGLPVEVLGLGGLLTKPE 590

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--------------- 462
            I D+ A+   +     + +   +L  P       D+  +  +  E               
Sbjct: 591  IADIRAMLEVLDDPTANPAMTRLLSGPRLRLGPRDLAALGRRAAELARSGLPGRPRAVTA 650

Query: 463  --------------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                                 + + E   + +     + +     + EL          +
Sbjct: 651  PADPLAEAVADVDPSDVVSLADALAEPGDEVSAEATRRLRAFADELAELRGHLGAGLV-E 709

Query: 503  FFTLILGAKKG--RQQFISRFGNEVIDVLDEFLNFTLRNEQN--------SYSSLQELIS 552
                ++         +  +  G    + L  FL      E++          +SL   + 
Sbjct: 710  LVHRVVETTGLDVELELAAPRGGRGRENLAAFLRVAADFERSAAGFDDASGRASLTSFLG 769

Query: 553  ELEQYPPTIKR---AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI- 608
             L       +            V+++T+H +KGLE  VV + +     F         I 
Sbjct: 770  FLSAGERYERGLDADVPGTGRAVQVLTMHGSKGLEWDVVAVPNISRTAFPDVQPGDRWIT 829

Query: 609  ----MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                +P+        + + +  +            ++  ++E  RL YV  TRA   L+ 
Sbjct: 830  TPEILPTPLRGDAAELPVFEVAADRAAFDRFAGECREQAEQEERRLAYVAFTRARWTLVA 889

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD------------EWIAY 712
              H     +K     + + +        +   ++                      W A 
Sbjct: 890  SGHWWGPTQKMPRGPSPFLLELAEHAAGDGNGRVDHWADTPLAKTNPSLETPPVFTWPAP 949

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-LE 771
                 H                                      +    +D   +     
Sbjct: 950  LNPVEHAARRDAADAVRGLLASAPAAARTAAARAAGAPPAGGAGITAGDVDGASEEPSAR 1009

Query: 772  SLLSDNQTFNRGLII-----HKLL--QVIFTLPEHK------------------------ 800
               +      R L+       +LL  + +      +                        
Sbjct: 1010 DDRAGMTAQERALLAELDQETRLLLDEQLTARAPARLVALPTGLTATQVMKLRADPDGLA 1069

Query: 801  ----------------RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC- 843
                            R     ++  +  +  P  ++++L  +    L++  +       
Sbjct: 1070 RELVRPMPRRPVPAASRGIRFHAWVEEVFERRPLLDHEDLPGAEDDYLDDAELRALKDAF 1129

Query: 844  -----DSYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIP 897
                  +    +V      P    ++ GRID +  +      + ++KT            
Sbjct: 1130 LAGPYGARRPYAVEAPFELPLGGRVVRGRIDAVYDLGAGRYEVVDWKTGSTPADP----- 1184

Query: 898  YTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
                 QL++Y          P + +     YV   +V   P+       
Sbjct: 1185 ----VQLALYRLAWSRLRAIPPREVDAAFYYVLTSRVVR-PELLTEGQL 1228


>gi|325954156|ref|YP_004237816.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
 gi|323436774|gb|ADX67238.1| UvrD/REP helicase [Weeksella virosa DSM 16922]
          Length = 1033

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 141/849 (16%), Positives = 275/849 (32%), Gaps = 121/849 (14%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
             +  +L        ++  +   Y   +  + +L+L   +    EE KK+N +L    LI 
Sbjct: 298  PVIGELNVLYQAVTQLNQKNILYNALQKNIQALSLNNEIRKALEEIKKENNLL----LIN 353

Query: 155  NTNDLLKKR---DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
              N L+ +      S +I  KI  +  H  IDE QDTS +QW+ +  L E+ +   +   
Sbjct: 354  EFNTLISEHIQNQPSPFIYEKIGSKFKHYFIDEFQDTSTLQWKNMYPLIENAYAQND--- 410

Query: 212  SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               T+  VGD KQSIY + G  P  ++  K               I  L  ++RS  +I+
Sbjct: 411  ---TIMLVGDVKQSIYRWRGGNPNLMINIKEQIP--------SIKIENLDTNWRSYENII 459

Query: 272  TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               + ++         +        H++                S   +           
Sbjct: 460  LFNNSLYQSISKNLSSN-------SHQAIYQAG-----------SNQLTNPKKGGYVLVE 501

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
            + +   ++    +   R+  T+  +     +            DI +LVRK     L+  
Sbjct: 502  FLEETAEKKMNEVHLDRVLETVERIKKDGFL----------YSDIAILVRKNDKGTLVAE 551

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                      I ++ N+  +L +   I+ +  L +        L+   + KS L  +  +
Sbjct: 552  HL----AKANIPIISNEALLLKNAAVIQFIECLLQIAHQP---LNKQQIAKSFLLAYQMN 604

Query: 452  DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
             + ++      TE + + IQ      +  +Q +   +  L       S +D    +L   
Sbjct: 605  LLQQV----DFTELISDAIQDSPESFLIVYQRLGYDLRFLFDE--NLSLYDLIEQLLNI- 657

Query: 512  KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
                 F      +   +   FL+  L     + +++   ++        +        + 
Sbjct: 658  -----FPFESSTDAYRI--AFLDEVLSFTSKNETTIANFLAHWNIKKEKLSLQTPKGVDA 710

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ--SKSRN 629
            ++IMT+H +KGLE PVV       ++  +  I                + I        N
Sbjct: 711  LQIMTIHKSKGLEFPVVIYPFIEDKINYNSDIWIPLEKEEDQPFESFYVTITSDLKIIEN 770

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
              +  +I+      + +   +LYV  TRA +QL +  +    N K+        +     
Sbjct: 771  REIKTIIEEENHLNELDNLNVLYVATTRAKEQLYLFANLPKDNGKEEKPAINSWLYKFVR 830

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
                + +  +             E       + P  ++                      
Sbjct: 831  EQQPKNESNRFELFGEAIRVSGQEEILKEGIDIPYYQQNWTN------------------ 872

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
                   L  ST   K K   E              IH +L  IF   +   +  I    
Sbjct: 873  ------HLAISTNSEKTKQERER-------TAFANAIHSILSKIFL--QEDAEKAIE--V 915

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID 869
              ++ L   +E   +   I +++ +P +      +  S +            I    R D
Sbjct: 916  EMHSTLLNKEEKTKVEKLIYQIINHPQLAE-FYNNPKSVILNERDFIAEDGQIF---RAD 971

Query: 870  QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
            ++ I Q+N+ I +YKT              H +Q+  Y           S+  +L+Y+  
Sbjct: 972  RVVIHQKNLSIIDYKTGSP--------QLKHQSQIDHYANFFNQL-GYTSIKKILVYIDS 1022

Query: 930  -PKVFIIPQ 937
              +   I +
Sbjct: 1023 QGQTISIDE 1031


>gi|313819374|gb|EFS57088.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL046PA2]
          Length = 1078

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 124/868 (14%), Positives = 246/868 (28%), Gaps = 140/868 (16%)

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A  +        K   V  F+DLI +    L+           +      +++DE QDT 
Sbjct: 205  ALSVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTD 264

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +QWE++R                  L+ +GD KQSIY+F GA+        +       
Sbjct: 265  PLQWEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ------- 307

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGT 307
                   ++ L +++R+   I+  V+ +FS  +    +S +  +      R       G 
Sbjct: 308  ---SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHDISMELVTAHHQESRIKTAATDGP 364

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               W Q       Q     +  T+  D    E         +   I  + G   +     
Sbjct: 365  RYHWSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDG 417

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LVR R+    +               V +    +    A +DL+ L   
Sbjct: 418  LRPLRPTDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLITLLEA 473

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D+     +  S L   +  D+    ++      +              +  V   
Sbjct: 474  LEN-TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAA 532

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +H                 ++    G +             +             + ++ 
Sbjct: 533  LHR----------PGVLVRLVSMAGGERYVTDLRQGAQKAHI-----AACEGRLTATATA 577

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    
Sbjct: 578  AWIREQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPI 637

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +     D     + I    +  +I    I+  ++  + E  RLLYV +TRA   + +   
Sbjct: 638  VWH---DGQRRVLDISSQGTDRSI---AIESHEEDERGENLRLLYVALTRARSAVRLWWS 691

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +     +  +V       E    +  T+        +   +T           
Sbjct: 692  PCP---LRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPWLNSGPIATVIAPANQKLLT 748

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYI------LNPSTIDTKGKTNLESLLSDNQ--- 778
             ++        +P+ L  P+               L+ +  +      ++  + D     
Sbjct: 749  RSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDD 808

Query: 779  ----------TFNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLS 827
                        + G ++H +L+ I T         +  +         P      L  S
Sbjct: 809  TAPGLCGLPGGTSFGTLVHTVLEYIDTAVIDLSSEVLSITRRALRMSPLPDVPPSELATS 868

Query: 828  ITRLLENPM--------MTTAMSCDSYSEVSVSGKIN----------------------- 856
            + ++L + +        +      D  +E++    +                        
Sbjct: 869  LEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPP 928

Query: 857  -------------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQEI----- 893
                          P  D  + G     ID +         + +YKT+            
Sbjct: 929  DDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHM 988

Query: 894  --------EHIPYTHIAQLSIYEKILKD 913
                          +  Q  +Y   L  
Sbjct: 989  YDAHTMRTMMFSSHYPLQGLLYSAALHR 1016


>gi|251787802|ref|YP_003002523.1| ATP-dependent DNA helicase Rep [Dickeya zeae Ech1591]
 gi|247536423|gb|ACT05044.1| ATP-dependent DNA helicase Rep [Dickeya zeae Ech1591]
          Length = 674

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 105/735 (14%), Positives = 235/735 (31%), Gaps = 136/735 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + L         +    +  +  T    I+K+            + +   
Sbjct: 59  AAREMKERVAQTLG------RQETRGLLIATFHTLGLEIIKREYAALGMKSNFSLFDDQD 112

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L+           K +    +      L++ +    +    + D        +S     
Sbjct: 113 QLALL---------KELTELWLENDKDLLQQLVSALSNWKNDLIDPAQAAAQARSERD-- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L  +    Y++  +   VLDF+DLI+    LLK+ +    +R +    + ++L+DE QD
Sbjct: 162 RLFAHCYRLYDDHLRACNVLDFDDLILLPTLLLKRNEE---VRERWQNRLRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L  +                VGD+ QSIYS+ GA P+ +   ++   + 
Sbjct: 219 TNTSQYELVKLLVGN----------RARFTVVGDDDQSIYSWRGARPQNLSLLQQDFPQ- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +++L  ++RS+  IL   + + +   +       S              G 
Sbjct: 268 -------LQVVKLEQNYRSSGRILKAANILIANNPHVFEKRLYSEL------------GY 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +  + + + ++                          A R+            + ++  
Sbjct: 309 GEELKIITANNE-----------------------EHEAERVV---------GELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +  Q  D  +L R    + L   +        +I    +          IKDL+A  R 
Sbjct: 337 IQKTQYGDYAILYRGNHQSRLFEKVL----MQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + + EDD +F+ ++ +P        + K+    R    +++            +  G+  
Sbjct: 393 LTNPEDDSAFLRIVNTPKREIGPATLQKLGEWARQRNRSLFNASFDMGLSQTLSGRGLES 452

Query: 481 FQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
            Q   +++ ++  +A+        D    +       +   S    E  +  ++    + 
Sbjct: 453 LQRFTQWMGDIARLAEQEPVKAVRDLIHGLDYESWLYETSPSPKAAEMRMKNVNTLFTWM 512

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  + +   +L ++++         +       ++V++MT+H +KGLE P V+LV 
Sbjct: 513 TEMLEGSDLDEPMTLTQVVTRFTLRDMMERNEAEEELDQVQLMTLHASKGLEFPYVYLVG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       +   +E  RL Y
Sbjct: 573 MEEGLLPHQTSID-----------------------------------EDNVDEERRLAY 597

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA   L            +  +      + +   +D   +  +   S  +      
Sbjct: 598 VGITRAQKALTFTLCRERRQYGELIRPEPSRFLLELPQDDVMWETERKVVSPQERMQKGQ 657

Query: 713 EWSTHHPENTPLERE 727
               +        R+
Sbjct: 658 NHLANLRAQLAKARD 672


>gi|77461740|ref|YP_351247.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens Pf0-1]
 gi|77385743|gb|ABA77256.1| ATP-dependent DNA helicase [Pseudomonas fluorescens Pf0-1]
          Length = 669

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/636 (15%), Positives = 205/636 (32%), Gaps = 125/636 (19%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
             +    ++K  +   +++ I         +  K        A  +  HY+   K    +
Sbjct: 127 AGDDGVDEIKNMIGAWKNDLILPAQALENARNPKE-----QTAAIVYTHYQRTLKAFNAV 181

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI+    L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L        
Sbjct: 182 DFDDLILLPVKLFEEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKMLIG------ 232

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                      VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST
Sbjct: 233 ----KRNQFTVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRST 280

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           + IL   + + S   +                         QLW ++    +        
Sbjct: 281 SRILRCANVLISNNPHEFEK---------------------QLWSEMGHGDEI------- 312

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   + +  +    A R+A  I ++           +      D  +L R      
Sbjct: 313 -------RVIRCRNEDAEAERVAMEILSLH---------LRTDRPYSDFAILYRGNYQAK 356

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           LI    +     +++    +          +KDLMA  R I++ +DD +F+ ++  P   
Sbjct: 357 LIELKLQ----HHQVPYRLSGGNSFFGRQEVKDLMAYFRLIVNPDDDNAFLRVINVPRRE 412

Query: 448 FSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSP 500
                + K+         ++Y    +        +    +     +++ ++        P
Sbjct: 413 IGSTTLEKLGNYATERKISMYAATDELGLGEHLDSRFTDRLSRFKRFMDKVREQCAGEDP 472

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDV---------LDEFLNFTLRNEQNSYSSLQELI 551
                 ++          +   ++             ++   N   ++E    +    + 
Sbjct: 473 ISALRSMVMDIDYENWLRTNSSSDKAADYRMSNVWFLIEALKNTLEKDEDGEMTVEDAIG 532

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             + +     ++        V++MT+H +KGLE P VF++    ++  H           
Sbjct: 533 KLVLRDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH----------- 581

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                      ++  T EE  RL YVG+TRA   L     +   
Sbjct: 582 ------------------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRK 617

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
              +         + +   +D   +    T +  K 
Sbjct: 618 QYGEIIDCAPSRFLDELPPDDLAWEGNDDTPTEVKA 653


>gi|295084357|emb|CBK65880.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
            helicase and exonuclease domains) [Bacteroides
            xylanisolvens XB1A]
          Length = 1056

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 126/864 (14%), Positives = 262/864 (30%), Gaps = 108/864 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            KN  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KNWATKTSPRYADIINLANSSLIQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +    N       L+ +TN LL +      S+++  KI   I++++IDE QDTS +
Sbjct: 345  EEVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIHNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +       +      
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNSLNDHIEHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +++   +++F+   N                 +      V   
Sbjct: 451  --PIRVKTLATNRRSETNVIRFNNRIFTAAANYLNGVYKQQLGKDCEDLQKAYADVV--- 505

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                 Q   +   +     S+ +   +          +   + +++ +           +
Sbjct: 506  -----QESPRSTEKGYVKVSFLEPDEEHDYTEQTLISLGEEVQHLLTSG----------V 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            Q  DI +LVRK K  P I         +    VV ++ F L   LAI  ++   RF+  +
Sbjct: 551  QLNDIAILVRKNKSIPRIADYF---DKELHYKVVSDEAFRLDASLAICMMLDALRFLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  ++   EL
Sbjct: 608  NNKIA-------------RAQLAVAYQNEVLQKGLDWNTLLLLPAENYLPAAFLEKTKEL 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      +    L  F +  +   Q++ S L   I
Sbjct: 655  R----LMPLYELLEELFSI------FEMNLIKDQDAYLFAFFDAVIDYLQSNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               ++   +           +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RYWDETLCSKTIPSGEVEG-IRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQ 763

Query: 612  --LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +   I      ++   +I  +     +     +   LLYV  TRA   LII    +
Sbjct: 764  TAPFNTLDILPINYSTQMAESIYGNDYLQERLQLWVDNLNLLYVAFTRAGKNLIIWSRKS 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      D      +       +                   +E 
Sbjct: 824  QKGTMSELLANTLPIVAQEEGIDWEEDCYEQGQLCPSE-------------------KER 864

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            IK   ++     +        +        S         +E   SD++  NRG ++H L
Sbjct: 865  IKTSTNKLTQKPEKLPIRMESMRHDIEFRQSNRSADFIQGIEEEDSDDRFINRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSE 848
              VI           I         +    E + +   +  +   +P +    S   ++ 
Sbjct: 925  FSVIE--TAEDIDPAIERLI--FEGVIRNDEKEKVAREVAKKAFSSPEIQDWYS-GKWT- 978

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            +     I   +K I+ + R D++ +    + + ++K     P         +  Q+  Y 
Sbjct: 979  LFNECAIIYKEKGILQTRRPDRVMMKDDQVVVVDFKFGKENP--------KYNKQVKGYM 1030

Query: 909  KILKDSYPNKSLVCLLIYVSEPKV 932
            ++L      K++   L YV E K+
Sbjct: 1031 QLLTKM-GYKNITGYLWYVDEEKI 1053


>gi|120602213|ref|YP_966613.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
 gi|120562442|gb|ABM28186.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
          Length = 1152

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 138/906 (15%), Positives = 267/906 (29%), Gaps = 100/906 (11%)

Query: 84   IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
            +        S   +             R R    +   + +  + +A+ L     + + +
Sbjct: 280  LNKASRGNASAQAESAFSAFMAALAAFRTRGRLLQRALAIMPLVGIAETLARRLPDYQLR 339

Query: 144  NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
               +  + L      +L      +    ++   + HIL+DE QDTS  QW  I+ L  + 
Sbjct: 340  EGKVPAQLLPQMARRVLDGEYGVSEAFCRMGTRLAHILVDEFQDTSKDQWAAIQPLAVEC 399

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                       +L  VGD KQ+IY + G +        R                 LP +
Sbjct: 400  LS------RGGSLTWVGDVKQAIYGWRGGDSALFDAVLRD--GELLAIAGDGISGTLPRN 451

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            +RS  +I+   + VF++  +    +      +   +        V    +  +    +  
Sbjct: 452  WRSRPEIVHFNNDVFALLGDEAHATTVLRAMLPEGTPPDVFSEAVDELARAFTGAAQETP 511

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            P+ +  +     +     A+  +  +   +   + +  +     +R  + +D+ VLVR  
Sbjct: 512  PRGDDESQEEGFVRLTHVAAFDSEELDAEVKTTLRSLFMGDLALRR--RWRDVAVLVRTN 569

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +   +          + I VV  +   L DH  I   +AL  F+    DDL+F      
Sbjct: 570  GEAGRVATWLME----WDIPVVTENSLRLADHPLISQTVALLGFLDYPRDDLAFWEFAAG 625

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY-IHELIHIAQFCSPHD 502
            P       D   +     +                  F  V +  I      A   S +D
Sbjct: 626  PEL---LGDAAGLDAPAMDDWLAEGGRGPLFTRFRDAFPAVWRRWIAPFYSRAGLMSVYD 682

Query: 503  FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
                +    +   ++    G      L  FL      E     SL   +   ++     K
Sbjct: 683  TVREVYTRFRVFDRYPEDAGF-----LRRFLEVVHAAEGQGLVSLSTFLDFWKRTGGDEK 737

Query: 563  RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   + VR+MT+H AKGLE PVV +         H    +    P   +  G+ + +
Sbjct: 738  VPMPEGMDAVRVMTMHKAKGLEFPVVVIPF-------HHQADRADDTPVRMEVEGLDLLV 790

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
            P+         +       ++  E   +LYV  TR  ++L        + + +S      
Sbjct: 791  PRCPEMGKPYYEAF----AASVREQLHVLYVAWTRPVEELHAFITERKTGKGRSALLEGL 846

Query: 683  DMVYDSF-----HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE------------ 725
             ++                 I  +   +       E     PE+TP              
Sbjct: 847  KVLLGLCGVPETWGTWERGTIPASALADSTTETMPEGRPDQPESTPHAMASPTLADSAPA 906

Query: 726  ---------REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                       +T+              +P     + P ++  +        +       
Sbjct: 907  DAAPVVLAPAAQTVPPPQPAASACASETAPQATGHDTPSLMVDAAASIPAPASTPDDDWR 966

Query: 777  N-------------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                                    RG+++H  L+ +      +            A   P
Sbjct: 967  PMQWLPRLKIFRNQLEEFTFTERRRGMLVHACLEALHPTGAPREDAARAVRHGIRAFPLP 1026

Query: 818  AKEYKNLLLSITRLLEN----PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873
              +   +   +T +LE     P     +   +       G ++   +      R D    
Sbjct: 1027 VPDEDAVAAELTTMLEWYAAQPETAHWLRHGT----PEQGILDAQGRLH----RTDLFVD 1078

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
                  + EYKT    P  IE        Q+  Y  +L D+ P + +  +L+Y+      
Sbjct: 1079 DGNVRVVVEYKTGAPSPDHIE--------QVHRYLSLLLDADP-RPVHGVLVYLDRRTTQ 1129

Query: 934  IIPQNK 939
             I   +
Sbjct: 1130 RIDPAE 1135


>gi|312880761|ref|ZP_07740561.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
 gi|310784052|gb|EFQ24450.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
          Length = 1200

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 150/957 (15%), Positives = 272/957 (28%), Gaps = 93/957 (9%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-LKKAQTLQQASQT 59
            L  R       + + I + L P      +  +  +  S+         K  + L+     
Sbjct: 220  LWTRAPFDPVAAADRIAQALEPRLREIRNLWDGDLLPSLGADLDRDGSKMGEALRGFLAR 279

Query: 60   QCIEER---------FSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK 109
                             L          T + K ++ + +     D ++      +   +
Sbjct: 280  TASLPWDGEGDRRFVRELFEGPLKRLPGTSKLKALLEEGLGSSLKDWRDDRASEAE-LAR 338

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
              +   + +          +     A ++ ++ ++  L F DLI      L++       
Sbjct: 339  SLEEGISPEEDALLERICRVCALGWAAWDASRMRSGALIFRDLIALARQALERNPA---- 394

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                     H+L+DE QDT  +Q  ++++L E             +LF VGD KQS+Y F
Sbjct: 395  ---YASRFRHLLVDEFQDTDPLQDRLVQALWE---------GGKGSLFVVGDLKQSVYRF 442

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ---- 285
              A+        +               I L  S+R+   +L  ++ +F           
Sbjct: 443  RHADLALFDETLQR------ARATGGDRISLDCSYRTRGKLLEGINGLFGSLWEEGLGAG 496

Query: 286  -GLSEDSTTTIRHRSSRIGQVG-TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
              L  D             +        E + +        + E      D L      +
Sbjct: 497  LSLGYDPLRGPEEAPWWKERNALPGPALEVLTATPREPEEEEGEPSKEKVDELRLRLYGT 556

Query: 344  ILARRIAYTISNMIGTDTIFSNG---KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
            + AR       +++ T     +    + R    +D+ VLV  R D PL+           
Sbjct: 557  LAARF-----RSLVETGAPVWDKAQRRHRPAAYRDLAVLVPTRADYPLLEEAFTAF---- 607

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             +               ++DL  L   +    D L+    L SP      D +     + 
Sbjct: 608  GVPGAFTAAVGFFTRGEVRDLADLLASLADPRDPLALGSFLASPFSGLPLDGVLPRLGRG 667

Query: 461  HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
               E               +    +     L  IA           +L        +   
Sbjct: 668  DLGE-------------DPELAAGVAERDRLRRIALLEGGTAALEALLARPSWLAAYPPG 714

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS----ANHNEVRIMT 576
                V+  L    +     E     SL    + L Q               + + VR++T
Sbjct: 715  ARRRVLGNLRTAADLAASFEATFGPSLPGTAAYLGQALARELPQAEPELLEDEDAVRVLT 774

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP-SLNDDPGIPIWIPQSKSRNNIVSDL 635
            VH AKGLE PVV +V       +    + +      L+     P   P   S        
Sbjct: 775  VHAAKGLEFPVVAVVRLEKTPEARGKARVLPSRHLGLSLGSWPPDLEPPEASPVRSGLWE 834

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFHNDER 694
                +  T+EE+ RLLYV  TRA D+L +        +          M V         
Sbjct: 835  GFFEEAGTREEWQRLLYVAATRAQDRLWLLGTQRRGQDGTIRGAAGSWMEVLRKHPLPGA 894

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            V +   T             ++         RE T    +         F P+   +   
Sbjct: 895  VWEEVETAPEGSSPPPPSAPASRLRPLPLPPRETTPLARLSATAYSLFRFCPLAYRMRFR 954

Query: 755  YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF----------TLPEHKRKNF 804
              L+P             L  D    + G + H +L              T PE +R   
Sbjct: 955  QGLDP------AWEGGSPLDGDAGGADLGSLAHWVLARWDGRGASLPRWLTSPEGERGRT 1008

Query: 805  ITSYCTKNAKLW--PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
            + +   ++ +     A   + L   +    E P      +  S            P  + 
Sbjct: 1009 LLNLLPQDLRPLFRDASVRETLERWLGGFSETPWGEAFRAALSLPSCRREVPFRVPLGET 1068

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
            ++ G +D +      + + ++KT        E     +  QL  Y    + ++    
Sbjct: 1069 LLVGAVDLLWQDGSGLHLRDHKTAR----SAEAAETLYSHQLRFYALAARRAHGEAP 1121


>gi|314960470|gb|EFT04572.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL002PA2]
 gi|315085342|gb|EFT57318.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL002PA3]
          Length = 1078

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 124/868 (14%), Positives = 246/868 (28%), Gaps = 140/868 (16%)

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A  +        K   V  F+DLI +    L+           +      +++DE QDT 
Sbjct: 205  ALSVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTD 264

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +QWE++R                  L+ +GD KQSIY+F GA+        +       
Sbjct: 265  PLQWEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ------- 307

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGT 307
                   ++ L +++R+   I+  V+ +FS  +    +S +  +      R       G 
Sbjct: 308  ---SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHDISMELVTAHHQESRIKTAATDGP 364

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               W Q       Q     +  T+  D    E         +   I  + G   +     
Sbjct: 365  RYHWSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDG 417

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LVR R+    +               V +    +    A +DL+ L   
Sbjct: 418  LRPLRPTDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLITLLEA 473

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D+     +  S L   +  D+    ++      +              +  V   
Sbjct: 474  LEN-TDERLRTRLCLSDLIGATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAA 532

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +H                 ++    G +             +             + ++ 
Sbjct: 533  LHR----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATA 577

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    
Sbjct: 578  AWIREQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPI 637

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +     D     + I    +  +I    I+  ++  + E  RLLYV +TRA   + +   
Sbjct: 638  VWH---DGQRRVLDISSQGTDRSI---AIESHEEDERGENLRLLYVALTRARSAVRLWWS 691

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +     +  +V       E    +  T+        +   +T           
Sbjct: 692  PCP---LRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPWLNSGPIATVIAPANQKLLT 748

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYI------LNPSTIDTKGKTNLESLLSDNQ--- 778
             ++        +P+ L  P+               L+ +  +      ++  + D     
Sbjct: 749  RSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDD 808

Query: 779  ----------TFNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLS 827
                        + G ++H +L+ I T         +  +         P      L  S
Sbjct: 809  TAPGLCGLPGGTSFGTLVHTVLEYIDTAVIDLSSEVLSITRRALRMSPLPDVPPSELATS 868

Query: 828  ITRLLENPM--------MTTAMSCDSYSEVSVSGKIN----------------------- 856
            + ++L + +        +      D  +E++    +                        
Sbjct: 869  LEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPP 928

Query: 857  -------------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQEI----- 893
                          P  D  + G     ID +         + +YKT+            
Sbjct: 929  DDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHM 988

Query: 894  --------EHIPYTHIAQLSIYEKILKD 913
                          +  Q  +Y   L  
Sbjct: 989  YDAHTMRTMMFSSHYPLQGLLYSAALHR 1016


>gi|121596152|ref|YP_988048.1| UvrD/REP helicase [Acidovorax sp. JS42]
 gi|120608232|gb|ABM43972.1| UvrD/REP helicase [Acidovorax sp. JS42]
          Length = 689

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/636 (16%), Positives = 191/636 (30%), Gaps = 127/636 (19%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                + ++A       +   YEE       +DF+DLI     LL+       +R K  +
Sbjct: 153 AQDDHERSIAL------IMQRYEERLTAYQSVDFDDLIGMPMRLLRHHPE---VREKWQR 203

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            + H+L+DE QDT+  Q+E+++ L  +               AVGD+ QSIY + GA   
Sbjct: 204 LLGHVLVDEYQDTNATQYELLKYLVGE----------RARFTAVGDDDQSIYGWRGATLD 253

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            + +  +   +         ++I+L  ++RST+ IL   + V                  
Sbjct: 254 NLKKLPQDFPQ--------LNVIKLEQNYRSTSAILRAANHVIQPNPK------------ 293

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                         L+ + +     +  P +              +    A R    I  
Sbjct: 294 --------------LFPKTLFSELGEGEPVRVV---------DCDNEEHEAERAVARIQG 330

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           +                 K+  +L R            R       I    +      D 
Sbjct: 331 LRA-------ASNPPPAWKNFAILYRANHQAKPFEKALR----KANIPYKVSGGTSFFDR 379

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK-- 472
             IKDL A  R  ++ +DD +F+  + SP        +  +        ++++  +    
Sbjct: 380 AEIKDLCAWFRLWINNDDDPAFLRAVTSPRRGVGHTTLAALGEFATQHKQSMFGALFNAM 439

Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE 524
                   G+       + +++L H A+    H+    F    L      Q       +E
Sbjct: 440 LPAVIPKRGLEGLLEFGRTVNDLEHRARHTHGHEAARAFLADWLKDMGYEQHLYDSEDSE 499

Query: 525 -----VIDVLDEFLNFTLRNE------------QNSYSSLQELISELEQYPPTIKRAHSA 567
                    + EF ++  +              Q +  SL E+   +             
Sbjct: 500 KVAAARWSNVLEFCDWMAQRAGGQIDDTAGATVQAATKSLLEVAQTIALLS--TISEREQ 557

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + V + T+H +KGLE P V L      +                              
Sbjct: 558 EQDMVVLSTLHASKGLEWPHVILAGVTEGMLPF------------------------KLD 593

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
            ++     +        +E  RL+YVG+TRA   L +         ++         + +
Sbjct: 594 DDDGRQQKVSDDTLQRLQEERRLMYVGITRAQRTLAVSWTKKRKKGREMVACQPSRFIAE 653

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
              +    ++          E  A +        TP
Sbjct: 654 MKLDAATARENPRDKLRQLREEFARKAQAAPSPATP 689


>gi|33594191|ref|NP_881835.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|33564266|emb|CAE43558.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
          Length = 689

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 99/710 (13%), Positives = 214/710 (30%), Gaps = 118/710 (16%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                   +   V   +  G       A  ++   +           S        +  +
Sbjct: 68  AAREMAERVKTLVDPKLAKGLTISTFHALGVRLLREEAAHAGLKPQFSILDADDAMSIIQ 127

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            ++      +  +++  +   ++  +                A       +   Y     
Sbjct: 128 ELLATTDRGRLREVQSIISLWKNALLTPDQAAAAAITPTEVEAV-----TVYRGYAATLA 182

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               +DF+DLI    +LL++      +R +    + ++L+DE QDT++ Q+ +++ LT  
Sbjct: 183 AYQAVDFDDLIRIPAELLERN---KEVRTRWQNRVRYLLVDEYQDTNVCQYRLVQLLTG- 238

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                          AVGD+ Q+IY++ GA  + + +                 +I+L  
Sbjct: 239 ---------VRAMFTAVGDDDQAIYAWRGATIENLAKLTTDYPN--------LKLIKLEQ 281

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS   IL   + V             S           G    + +            
Sbjct: 282 NYRSVQRILAAANNVIERNPKLFEKKLWSDL---------GHGEPIIVSPM--------- 323

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                            +     A  IA  +S             +R  Q KD  +L R 
Sbjct: 324 -----------------NGDEHEAESIAMKVSA---------ARFERQAQWKDFAILYRS 357

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + ++    R LK    I    +      D   ++D++A  R + + EDD +F+    
Sbjct: 358 NHQSRVLEQALRNLK----IPYTISGGQSFFDKAEVRDILAYLRLVANDEDDPAFIRAAT 413

Query: 443 SPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIA 495
           +P     +  +  +         ++   + +       A   +   +   +++  +   A
Sbjct: 414 TPKRGIGQGTLQTLGQYAAQRQCSLLAAVDEAGLESLLAPRQLEPLRTFAEFVRRIQWRA 473

Query: 496 QF--------------CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                               D  + I   +        R        + E   +  R  +
Sbjct: 474 GRGVEGQPARAPEPAGQILDDLLSAIQYERYLYDMLEERPAQTRWQNVLELTGWLKRKAE 533

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +L +L+  +       +       + V++ T+H +KGLE P V+L      +  H 
Sbjct: 534 EDGMTLFDLVQHVALVTMLERGE-EEEPDAVKLSTLHASKGLEYPHVYLAGVEEGLLPH- 591

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                      ++           +  +E  RL+YVG+TRA   
Sbjct: 592 ---------------------LGKDDEDSGDPARAAETLATRIQEERRLMYVGITRAQRS 630

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           L +         ++   R     + +    D +V++ + T +++  E + 
Sbjct: 631 LNLSWCKKRRRAREDVVREPSRFIEEMGLGDAKVQEDEATRAMSPKERLG 680


>gi|261823432|ref|YP_003261538.1| ATP-dependent DNA helicase Rep [Pectobacterium wasabiae WPP163]
 gi|261607445|gb|ACX89931.1| ATP-dependent DNA helicase Rep [Pectobacterium wasabiae WPP163]
          Length = 673

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/633 (16%), Positives = 214/633 (33%), Gaps = 123/633 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K +  Q +      L++ +    +    + D        +S      L  +  + Y E  
Sbjct: 118 KELTEQWLENDKVLLQQLISTISNWKNDLIDPAGAAATARSERD--KLFVHCYSLYHEHL 175

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +   VLDF+DLI+    LLK+    A +R +    + ++L+DE QDT+  Q+E+++ L  
Sbjct: 176 RACNVLDFDDLILLPTLLLKQN---AEVRERWQNRLRYLLVDEYQDTNTSQYELVKLLVG 232

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     +      VGD+ QSIYS+ GA P+ ++  ++              +I+L 
Sbjct: 233 ----------TRARFTVVGDDDQSIYSWRGARPQNLVLLQQDFPA--------LDVIKLE 274

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS+  IL   + + +   +       S              G     + + + ++  
Sbjct: 275 QNYRSSGRILKAANILIANNPHVFEKRLFSEL------------GYGDELKVITANNED- 321

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                                   A R+            + ++   +  Q  D  +L R
Sbjct: 322 ----------------------HEAERVV---------GELIAHHFIKKTQYGDYAILYR 350

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L   +        +I    +          IKDL+A  R + + +DD +F+ ++
Sbjct: 351 GNHQSRLFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIV 406

Query: 442 KSPLFNFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
            +P        + K+     +           +   Q     G+   Q   +++  +  +
Sbjct: 407 NTPKREIGPATMKKLGEWAGQRNKGLFSASFDFGLSQSLTGRGLESLQRFTQWMEGISRL 466

Query: 495 AQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSS 546
           A+        D    +       +   S    E  +  +++  ++        + +   +
Sbjct: 467 AEREPVAAVRDLIHGLDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSDLDEPMT 526

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++         +       ++V++MT+H +KGLE P VFLV     +  H+     
Sbjct: 527 LTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSID- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI--I 664
                                             +   +E  RL YVG+TRA  +L   +
Sbjct: 586 ----------------------------------EDNVDEERRLAYVGITRAQRELFFTL 611

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           CK      E    + + + +           ++
Sbjct: 612 CKERRQYGELMRPEPSRFLLELPQDDVVWETER 644


>gi|116747950|ref|YP_844637.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB]
 gi|116697014|gb|ABK16202.1| ATP-dependent DNA helicase, Rep family [Syntrophobacter
           fumaroxidans MPOB]
          Length = 620

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 103/551 (18%), Positives = 186/551 (33%), Gaps = 107/551 (19%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y E   ++  +DF+D+++ T DLL+K      IR       ++IL+DE QD++ IQ 
Sbjct: 167 YRIYNEMLAQSNSVDFDDILLLTRDLLQKYPE---IRKAYRNRFDYILVDEFQDSNEIQN 223

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           ++I  L +D             L  VGD+ QSIY F GA P   +   +   K       
Sbjct: 224 QIIDLLLKD-----------GRLTVVGDDYQSIYQFRGANPFHFINFPQKYAK------- 265

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +  L  +FRST  I+T  D++ +                   S R GQ  TV+ +  
Sbjct: 266 -ARVFRLEENFRSTRQIVTASDRLIAHNLQRIEKQCF--------SRRDGQPVTVETF-- 314

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                      +  + A  +A     ++  +          I  
Sbjct: 315 --------------------------YNEQMEAEWVADRCRELLNDE---------NIPY 339

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           ++I +L R +  +       R       +               ++D+ A     ++  D
Sbjct: 340 REIAILYRTKFTSLPFERALRS----AGVPYTMVGAQGFFQRREVQDINAYLICAVNPSD 395

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG--ISKFQHVIKYIHEL 491
           D+SF  ++  P        + KI   +    ++ +  +K  +      K    +  +  L
Sbjct: 396 DISFERIVNVPRRGIGPGALKKIFGCKERNMSLRDAARKAIDGRLIPKKAAAELDKLLSL 455

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQF--ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           +       P      ++           +S  G+++   L+   +     +    +S+ E
Sbjct: 456 LESIAEEKPDAAMHRVMKETDYFAHLSTLSDDGDDLETRLENIKSMI--YDAAGKASIPE 513

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            + +            + N N VR+ T+H AKGLE   VF+V     +  H+        
Sbjct: 514 YLEDAALIRDDQ--DETDNGNGVRLSTIHAAKGLEFKAVFVVAVEEGILPHRKS------ 565

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                 +    +   +   EE  RL+YV MTRAS+ L +   + 
Sbjct: 566 ----------------------IETESEIELERGMEEERRLMYVAMTRASELLSLSAAAT 603

Query: 670 TSNEKKSNQRT 680
              E       
Sbjct: 604 RRGELARPSPF 614


>gi|51893311|ref|YP_076002.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium
            thermophilum IAM 14863]
 gi|81610460|sp|Q67MD5|ADDA_SYMTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
            Full=ATP-dependent helicase/nuclease AddA
 gi|51857000|dbj|BAD41158.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium
            thermophilum IAM 14863]
          Length = 1371

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 127/851 (14%), Positives = 234/851 (27%), Gaps = 134/851 (15%)

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT- 116
            +T    +    +++    +    +K  + + + +    L+E+ KK+     +        
Sbjct: 271  ETGSYADLAEAVAAVAFGRLPGTKKGEVDEGLKEAVGKLRERAKKAVRAVQEQWFCRTAD 330

Query: 117  ------YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD------ 164
                    +         + +     + EAK     +DF DL      LL+         
Sbjct: 331  EWLADLQAIAPHLRTLGGVVREFAEAFREAKAAQSAIDFNDLERLALQLLRDSTSTPDRL 390

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
            V + +   +      IL+DE QD + +Q  ++  +  D   G      P   F VGD KQ
Sbjct: 391  VPSDVARDLRARYREILVDEYQDINGVQDAILTLVARDGQEG------PPNRFMVGDVKQ 444

Query: 225  SIYSFHGAEPKRVLREKRINQ--KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            SIY F  A+P   L +    +    A   G   + I L  +FRS   ++  V+ +F    
Sbjct: 445  SIYRFRHADPGLFLAKYGAYRPWAGAPEPGAAGARIVLGANFRSREGVVNAVNFLFRQIM 504

Query: 283  NAQ--GLSEDSTTTIRHRSSRIGQVG------TVQLW----------------------- 311
            +A+   L  D    + +R+      G       V+L                        
Sbjct: 505  SARAGELDYDRDAELVYRAGYPPLPGEEAAEPPVELHLLDGEEQGPADGAGSGQAPAASG 564

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG--------TDTIF 363
             +  S          E        L   ++    AR IA  I  M+              
Sbjct: 565  PEAASGDGVAGEADGEEEDPALAELADLTAMEREARLIAARIRAMVDGTADQPPVQVWDR 624

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                 R +Q +DI +L+R              + +   I   G           ++  ++
Sbjct: 625  KLKTYRPLQYRDIAILLRATTGRIN---TIIEVLSQSGIPAYGQVSTGYFQATEVQVFLS 681

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV----------------- 466
            L + + +   D+    +L SP+   S  D+ +I                           
Sbjct: 682  LLQVLDNPLQDIPLAAVLHSPIVGLSAADLARIRLANPRGSFYDALVAAAAPASGAAMAE 741

Query: 467  -------------------------------YEYIQKFANCGISKFQHVIKYIHELIHIA 495
                                                          + V+    E +   
Sbjct: 742  AAAAPASEAAMAEAAPAPASGAAMAEAAAAADPAEAGATTSTAPGLEGVLVRFLECLDRW 801

Query: 496  QFCSPHDFFTLI----LGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
            +  +     + +    L              G +    L          +Q +   L   
Sbjct: 802  RTLARRRPLSQVVWQILQETGYLHYVGGMPGGAQRQANLLALYERAREFDQFARQGLFRF 861

Query: 551  ISELEQYPPTIK-----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            +  +E+            A     + VRIM++H +KGLE PVVF+   GS          
Sbjct: 862  LRFIERLQAEQSDMGTAPALGEGEDVVRIMSIHKSKGLEFPVVFVAGLGSSFSDRDLRGD 921

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII- 664
            + +   L   P +     + K        + +  + +   E  R+LYV +TRA ++L++ 
Sbjct: 922  LLLNRDLGFGPQVVDPGTRLKYPTLAYHAVREVTRLANLAEELRVLYVALTRARERLVLV 981

Query: 665  ---------CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
                     C   +              ++    + D     +           +A E  
Sbjct: 982  GSVKSLRAACARWSRGAGAPGWPLPESLLLSARSYLDWIGPAVLRHADGAPLRELAGEGG 1041

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKL---FSPIKNDINEPYILNPSTIDTKGKTNLES 772
            T               +       P  L     P                       L+ 
Sbjct: 1042 TAPGSGPDPALAGDPSRWEVTIWDPASLQQILQPRPEAAPPAVDWARIGAAEPLDRPLDE 1101

Query: 773  LLSDNQTFNRG 783
             L        G
Sbjct: 1102 ALHARLRARFG 1112



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/280 (10%), Positives = 76/280 (27%), Gaps = 21/280 (7%)

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
            ++  ++     +             ++    ++  E   Y           +        
Sbjct: 1096 DRPLDEALHARLRARFGWRYPFEPVVRRFGKLSVTELKGYFDPDAEAPAEEMAPPAEEMA 1155

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
               E+  P    S    +   P     S+        L+          RG  +H ++Q 
Sbjct: 1156 PPAEEMAPPAEGSAPPVEEPAPSTEPSSSTFAARPRFLQQDRRALSPTERGTAVHVVMQH 1215

Query: 793  IFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
            +        +          +   L P +       +I     +P+    +         
Sbjct: 1216 LDLSRPLDAEGVGRQLAEMVERELLTPQQAAAVDAEAIADFFASPLGLRILQSRDRVSQE 1275

Query: 851  VSGKINCP--------------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
            +S  +  P                 +I+ G ID +   +    + +YKT    P +    
Sbjct: 1276 LSFTLAVPAAEVYGDLPPEAAAGDVVIVQGMIDLLLEEEDGYVLVDYKTDRRDPVQAAQ- 1334

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
               +  Q+  Y + +++    + +    L +++  +   +
Sbjct: 1335 --RYTTQIRFYRRAVEEIL-GRPVKEAYLHFLASRRSIAV 1371


>gi|299145467|ref|ZP_07038535.1| putative UvrD/REP helicase domain protein [Bacteroides sp. 3_1_23]
 gi|298515958|gb|EFI39839.1| putative UvrD/REP helicase domain protein [Bacteroides sp. 3_1_23]
          Length = 1056

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 124/864 (14%), Positives = 261/864 (30%), Gaps = 108/864 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            KN  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KNWATKTSPRYADIINLANSSLMQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +    N       L+ +TN LL +      S+++  KI   I++++IDE QDTS +
Sbjct: 345  EEVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIHNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +       +      
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNSLNNHIEHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +++   +++F+   N                 +      V   
Sbjct: 451  --PIRVKTLATNRRSETNVIRFNNQIFTAAANYLNGVYKQQLGKDCEDLQKAYADVV--- 505

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                 Q   +   +     S+ +   +          +   + +++ +           +
Sbjct: 506  -----QKSPRSTEKGYVKVSFLEPDEEHDYTEQTLISLGEEVQHLLTSG----------V 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            Q  DI +LVRK K  P I         +    V  ++ F L   LAI  ++   RF+  +
Sbjct: 551  QLNDIAILVRKNKSIPRIADYF---DKELHYKVASDEAFRLDASLAICMMLDALRFLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  ++   EL
Sbjct: 608  NNKIA-------------RAQLAVAYQNEVLQKGLDWNTLLLLPAENYLPAAFLEKTKEL 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      +    L  F +  +   Q++ S L   I
Sbjct: 655  R----LMPLYELLEELFSI------FEMNLIKDQDAYLFAFFDAVIDYLQSNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               ++   +           +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RYWDETLCSKTIPSGEVEG-IRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQ 763

Query: 612  --LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +   I      ++   +I  +     +     +   LLYV  TRA   LII    +
Sbjct: 764  TAPFNTLDILPINYSTQMAESIYGNDYLQERLQLWVDNLNLLYVAFTRAGKNLIIWSRKS 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      D      +       +                   +E 
Sbjct: 824  QKGTMSELLANTLPIVAQEEGIDWEEDCYEQGQLCPSE-------------------KER 864

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            IK   ++     +        +        S         +E   SD++  NRG ++H L
Sbjct: 865  IKTSTNKLTQKPEKLPIRMESMRHDIEFRQSNRSADFIQGIEEEDSDDRFINRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSE 848
              VI           I         +    E + +   +  +   +P +    S   ++ 
Sbjct: 925  FSVIE--TAEDIDPAIERLI--FEGVIRNDEKEKVAREVAKKAFSSPKIQDWYS-GKWT- 978

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            +     I   +K ++ + R D++ +    + + ++K     P         +  Q+  Y 
Sbjct: 979  LFNECAIIYKEKGVLQTRRPDRVMMKDDQVVVVDFKFGKENP--------KYNKQVKGYM 1030

Query: 909  KILKDSYPNKSLVCLLIYVSEPKV 932
            ++L      K++   L YV E K+
Sbjct: 1031 QLLTKM-GYKNITGYLWYVDEEKI 1053


>gi|329297877|ref|ZP_08255213.1| ATP-dependent DNA helicase Rep [Plautia stali symbiont]
          Length = 673

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 118/714 (16%), Positives = 243/714 (34%), Gaps = 136/714 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I+ + +L +E        KA  ++        +++ +
Sbjct: 59  ASREMKERV-AQTLGRKEARGLMISTFHTLGLEIIKREY--KALGMKSTFSLFDDQDQLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K++  Q + +    L++ +    +    + D      + KS     
Sbjct: 116 LL------------KDLTKQWLEEDKTLLQQLISTISNWKNDLVDPQGAAGLAKSQRD-- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +  +  A Y++  K   VLDF+DLI+    LL++      +R +  Q I ++L+DE QD
Sbjct: 162 QIFAHSYALYDQHLKACNVLDFDDLILLPTLLLQRN---QEVRERWQQRIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L            +      VGD+ QSIYS+ GA P+ ++  K      
Sbjct: 219 TNTSQYELVKLLVG----------ARARFTVVGDDDQSIYSWRGARPQNLVLLKEDFPA- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +++L  ++RST  IL   + + +   +       S                
Sbjct: 268 -------LEVVKLEQNYRSTQRILKCANILIANNPHVFEKRLFS---------------- 304

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                              E        +   ++ +  A R+A           + ++  
Sbjct: 305 -------------------ELGQGSELKVLSANNEAHEAERVA---------GELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q KD  +L R    + +       L    +I    +          IKDL+A  R 
Sbjct: 337 INKTQYKDYAILYRGNHQSRVFEK----LLMQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + + EDD +F+ ++ +P        + K+        ++++            +  G+  
Sbjct: 393 LTNPEDDSAFLRIVNTPRREIGPATLQKLGEWANLRNKSLFNASFDMGLEQTLSGRGLEH 452

Query: 481 FQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFT 536
            Q    +++E++ + +        D    I       +   S    E+ +  ++    + 
Sbjct: 453 LQRFTHWLNEIVQLTEREPVNAVRDLIRGIDYESWLFETSPSPKSAEMCMKNVNTLFQWM 512

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E N   +L ++++         +       ++V++MT+H +KGLE P V+LV 
Sbjct: 513 TEMLEGDELNEPMTLAQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLEFPYVYLVA 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       ++  EE  RL Y
Sbjct: 573 MEEGLLPHQSSID-----------------------------------ENNIEEERRLAY 597

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           VG+TRA  +L            +  +      + +   +D   ++ K   S  +
Sbjct: 598 VGITRAQKELTFTLCRERRQYGELVRPEPSRFLLELPQDDVAWEREKKVISAEE 651


>gi|289666279|ref|ZP_06487860.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 658

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 104/723 (14%), Positives = 225/723 (31%), Gaps = 146/723 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +          I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRI-RGDGADGLTICTFHALGLK--FLQIEHAAAGLKRGFSIFDSDDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMHGAKPDAIEDAKNLISRAKNAGLSPEQAMAAARSTREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L   Y+        +DF+DLI     +L+  +    I     + I ++L+DE QD
Sbjct: 162 --AASLYERYQARLTTFNAVDFDDLIRLPVQILEANED---IVMGWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  IS +         G 
Sbjct: 310 IRVW--------------------------ECRDSEHEAEKVAAEISFL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    + L+    +           +   +KD+++  R 
Sbjct: 335 AKQVPWSDFCILFRGNFQSRPLEKALQLLR----VPYHLTGGTAFLERQEVKDVLSWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISK 480
           I++ +DD +F+  ++SP        + ++                    +Q       + 
Sbjct: 391 IVNPDDDAAFLRAVQSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + ++   +      +   ++           ++  +E         LDE    
Sbjct: 451 LSAFTDILRDMREHSSSMPAGELVRMLAEKSGLLNDLRNQSKDETGFQRRKRNLDEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     +S  +L ++L       +       N+VR+MT+H +KGLE   VF+V   
Sbjct: 508 AEWFEGGPRGASASDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                      ++   +E  RLLYVG
Sbjct: 565 DGVLPHEVSL-----------------------------------EEGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA +QL +             +     ++D +       +    +       +     
Sbjct: 590 ITRAKEQLWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASAG 649

Query: 712 YEW 714
              
Sbjct: 650 LAA 652


>gi|218294885|ref|ZP_03495739.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
 gi|218244793|gb|EED11317.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
          Length = 868

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 142/950 (14%), Positives = 262/950 (27%), Gaps = 148/950 (15%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E      + +  L             +            A+ L+  +    ++  F+
Sbjct: 42  AAEELRGRAKRAVLALSAEDPRLKEAEREVHGALFTTIHGFMAEALRHTAPLLSLDPDFA 101

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL +F     F  +   +          L   L ++     + R    T           
Sbjct: 102 LLDTFLAEALFLEEARSLL-----YRKGLDGGLARALLHLYRKRTLAETLHPLPGAEGVF 156

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y         L   DL      +L+  +       ++ +   HIL+DE QD
Sbjct: 157 ALYLEALEGYRRRLPA--FLSPSDLEALALRILENPEA----LRRVVERFPHILLDEYQD 210

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T  +Q    + L            +   L  VGD KQSIY F  A  +      +     
Sbjct: 211 TGPLQGRFFQGL----------KEAGARLVVVGDPKQSIYLFRNARVEVFREALK----- 255

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                Q   +  L  ++R    +   +++  +               +R R  R    G 
Sbjct: 256 -----QAEEVRYLSTTYRHAQAVAEFLNRFTA---------LFGEEGVRVRPHRQEV-GR 300

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V++   V      +                        A  +   +  +           
Sbjct: 301 VEVHWVVGEGGLEEK-------------------RRAEAHLLLDRLMALREEG------- 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                   + VLVR R   P +    R       +               ++DL    R 
Sbjct: 335 ---YAFSQMAVLVRSRSSLPPLEAAFRA----RGVPYALGRGRSFFARPEVRDLYHALRL 387

Query: 428 ILS-----QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            L       E+ L+ +  L+ P       ++ +    +     + E              
Sbjct: 388 SLLEGPPGPEERLALLAFLRGPWVGLDLSEVEEALKAQDPIPLLPEA------------- 434

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            V   +  L  +A            L      + F+ R        LD      L     
Sbjct: 435 -VRAKLRALRALAGLPPL-----EALKRLSRDEAFLRRLSPRARVNLDA---LLLLAAME 485

Query: 543 SYSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            +  L+ L+  L                  V+++TVH AKGLE PVV L D        +
Sbjct: 486 RFPDLEALLEWLRLRAEDPEAAELPEGEEGVQVLTVHGAKGLEWPVVALFDLSRGENPKE 545

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
               + +   +                     ++ K L+K+  EE  RLLYV ++RA D 
Sbjct: 546 EDLLVGLGGEVALRG------------TPAYKEVRKALRKAQAEEARRLLYVALSRARDV 593

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           LI+   ++                       E ++++ L           + +    P  
Sbjct: 594 LIVTGSASGRPG----------------PWVEALERLGLGPESQDPLVRRHPFKALPPLG 637

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
              +             +           +  P     +         LE          
Sbjct: 638 DRPQTPPPPPLPAPYAHL--AFPERPLPFVYSPSAFTKAKEPVPLAEALEKEALPEFYRA 695

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            G ++H  +     L              + A  +   E + LL  +  LL        +
Sbjct: 696 LGTLVHYAIAR--HLDPEDEGAMAGLLLQEVAFPFAEGEKRRLLEEVRDLLR--RYRGML 751

Query: 842 SCD-----SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                   +  E      +  P    +  G +D++       ++ +YKT        E  
Sbjct: 752 GPSLPPLEAREEDHAELPLVLPLGGTVWYGILDRLYRVGGRWYLEDYKTDR------EVR 805

Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
           P  +  QL+IY + L +++  ++    L+Y+    V  +   +L +A  E
Sbjct: 806 PEAYRFQLAIYRRALLEAWGVEA-EARLVYLRHGLVHPLDPEELERALKE 854


>gi|237807041|ref|YP_002891481.1| ATP-dependent DNA helicase Rep [Tolumonas auensis DSM 9187]
 gi|237499302|gb|ACQ91895.1| ATP-dependent DNA helicase Rep [Tolumonas auensis DSM 9187]
          Length = 676

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 227/702 (32%), Gaps = 126/702 (17%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                   + + +      G       +  L    +     +  +  S F  T + +  K
Sbjct: 59  AAREMKERVAQTLGRREARGLTVSTFHSLGLDLIRREHQHLQLKANFSLFDDTDQMSLIK 118

Query: 83  NIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
            +   +   + + +L ++L ++   +               T      A +    Y++  
Sbjct: 119 ELTEADPELQGNKELLQQLVQTISRYKNDLILPAQALKRAHTPEEQRFAIW-YERYQKQM 177

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
                LDF+DLI+    LLK     A +R +    I ++L+DE QDT+  Q+E+++ L  
Sbjct: 178 SAYNALDFDDLILLPTLLLKTN---AEVREQWQNRIRYLLVDEYQDTNTSQYELVKLLVG 234

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +                VGD+ QSIYS+ GA+P+ ++R ++   +         ++I+L 
Sbjct: 235 E----------RARFTVVGDDDQSIYSWRGAQPQNLVRLQQDFPR--------LNVIKLE 276

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS   IL   + + +   +       S                              
Sbjct: 277 QNYRSKGRILKCANILIANNPHVFDKQLFS------------------------------ 306

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
               +  +      L  ++     A ++A  I           +        KD  +L R
Sbjct: 307 ----ELDYGMPVRVLMAKNEE-HEAEKVAAEI---------MGHRFMNRTSWKDYAILYR 352

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + L+  +        +I    +          IKD+MA  R +++ +DD +F+ ++
Sbjct: 353 GNHQSRLLEKVL----MQNRIPYKISGGTSFFSRTEIKDIMAYLRLLVNPDDDNAFLRVV 408

Query: 442 KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYIHELIHI 494
             P        + K+        +++Y    +               +H   ++  +   
Sbjct: 409 NLPRREIGPTTLEKLGHYANQRGKSLYAASFEIGLEQHLHGRGLQALRHFCDWLCRMSDN 468

Query: 495 AQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN------EQNS 543
           A   +  +    ++      +         +     +  +     +          +  +
Sbjct: 469 AARGNSEEVVRDLIKDIHYDEWLYETSPSPKAAEMRMQNVSTLYRWLTDMLAGDVQQDAA 528

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +L E ++         +       ++V++MT+H +KGLE P VF++     +  H+  
Sbjct: 529 PLNLSEAVARFTLRDMLERNEGDEALDQVQLMTLHASKGLEFPYVFMIGMEEGLLPHQ-- 586

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL- 662
                                              + +   +E  RL YVG+TRA  +L 
Sbjct: 587 ---------------------------------ASIDEDNIDEERRLAYVGITRAQTELC 613

Query: 663 -IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            ++CK      +  + + + + +           +K   +  
Sbjct: 614 FVLCKERRQFGDTVNPEPSRFLLELPQDDLQWEARKEPASAE 655


>gi|148925999|ref|ZP_01809685.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845478|gb|EDK22570.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 691

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 195/539 (36%), Gaps = 92/539 (17%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKL---KKSQDEFIKIRDRFNTYKMF--KSTLASLTLA 130
                 K++I  +      D+ + +   K        + +  N  K    +        A
Sbjct: 114 DTKKIIKDLIHDKNKDNVYDIIKYISYCKNEGKRVSNVFEDLNLLKEHNFEKYQNEYKFA 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ 
Sbjct: 174 N-YYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNT 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +     
Sbjct: 230 LQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN---- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS   IL   + + S  E   G +                      
Sbjct: 276 ----VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKT---------------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++   +     ++     + L            IA  +  ++ +           
Sbjct: 310 --LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKLLNSG---------- 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++AK+I +L R    +  I           +IS          + L IKDL++  R IL+
Sbjct: 347 VEAKEIAILFRVNALSRAIEEAF----MKKQISYKLLSGMRFYERLEIKDLISYLRLILN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKF 481
             DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++ 
Sbjct: 403 PSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQNEA 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I+ IH L          D    +   K    +     G+E I  LDEF        +
Sbjct: 463 NIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIRNLDEFYANLKEKLK 520

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL++L+SE+                 V +M++H +KGLE   VF++      F 
Sbjct: 521 EDPKASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFP 575


>gi|323697653|ref|ZP_08109565.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323457585|gb|EGB13450.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 1049

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 130/933 (13%), Positives = 271/933 (29%), Gaps = 108/933 (11%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
              +  L   + +   + V    +      L   +  +         E F  +      +K
Sbjct: 206  AAILGLLTGEHAAFRQSVEAMADHAGAVGLPLNKYFRDFLDNCLNMELFDPIPDSAYIKK 265

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
             +    ++ +         +    + Q ++ + R    T         ++ +A  L    
Sbjct: 266  TSAADCVLAKGKGLVDERTESFYARLQGKWAEYRLHHATLAGAYFLAPAIEIALRLEQGL 325

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            E+ +++   +    +  +  +LL      +    ++   ++H+L+DE QDT+  QW  I 
Sbjct: 326  EDLQRRRGTVLNAAVAGHVIELLADGGAVSEAYCRLGCRLHHLLVDEFQDTNRDQWRAIT 385

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
             L  +            +LF VGD KQ+IY + G +           Q       +    
Sbjct: 386  PLAGECLAKGG------SLFFVGDVKQAIYGWRGGDSALFDEVMS--QPDVAGLAEDAEA 437

Query: 258  IELPLSFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
              LP ++RS  +++   ++ F+     +  G   D        + R    G +    +  
Sbjct: 438  ETLPDNWRSHRNVVEFNNRFFANMEDPDQAGDLADRVLPDADPAFRAEFAGQLMRTFRDC 497

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
            +Q     +     +          +         A  +   +       +        +D
Sbjct: 498  AQSLPDRHRDTAGYVRMVRLEGGTA---------AEIVEQTLERLDALMDDLTARRAYRD 548

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I +LVR      L+      L     I V+  +   L  H  ++ L     F+    DD 
Sbjct: 549  IGILVRSHFHAALVCD----LLVRKNIPVITENSLQLDRHPVVRQLAGFLAFLDFPRDDA 604

Query: 436  SFVCMLKSPLF-----NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            +F+  +            +E ++     +  +     ++ + F            + I  
Sbjct: 605  AFLTFVGGKELFLAESGLAEAELLDWLIRPRKRPLGVQFREDFPGPWR-------RLIEP 657

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
              + +   +P+D     +   +  ++       E    +  FL      E+N Y SL   
Sbjct: 658  FYNQSGLMTPYDLTMEAVRVFRVLER-----HPEAELYVRRFLEVVHLAEENGYGSLSAF 712

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +   E+     K     N + VRIMTVH AKGLE PV  +         H          
Sbjct: 713  LEYWEEKSDQEKVPLPENIDAVRIMTVHKAKGLEFPVAIVPF-------HHWKTDTDRHF 765

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
            ++    G  + +P  K       + +    +    E   LLYV  TRA ++L        
Sbjct: 766  TVQAYRGRNLLVPLKKDLGRPYQESLGRAVR----EQLNLLYVAWTRAREELYGFFPEKA 821

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
                        D   +   +           +   +     E     P  T  +    +
Sbjct: 822  LKIANPVVLKAMDQFLELDDDGVFELGRTPAETRPSEAAPRPEPRDIPPAETTADLMGWL 881

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
             +L   +      F   +                                 RG + H+++
Sbjct: 882  PRLRVYRHNLDDYFFNERM--------------------------------RGEVAHRVM 909

Query: 791  QVI----FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL----LENPMMTTAMS 842
            + +        +  R   +              +   L   +  +    L +  +   ++
Sbjct: 910  EHMRVTGDNAADADRAVALAVQDFPELGGLAEADRAQLDADLRAMAAWALNDDRLRGWLA 969

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
              +        ++           R D +        + ++KT    P            
Sbjct: 970  TGAR-----EPEVLDQDGGFK---RFDLLVAGPD-AVVVDFKTGRPDPHNE--------V 1012

Query: 903  QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            Q+  Y  IL            LIY+   ++  +
Sbjct: 1013 QVRDYMGILAAMGGYGEPRGFLIYLDLREIREV 1045


>gi|282852209|ref|ZP_06261561.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 224-1]
 gi|282556628|gb|EFB62238.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 224-1]
          Length = 828

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 103/545 (18%), Positives = 194/545 (35%), Gaps = 44/545 (8%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY---LNAHYEEAKKK 143
           Q+      DL ++LKK    F  + ++     + KS     T+      L   + + K++
Sbjct: 299 QDSQDLKLDLNDQLKKIFASFFVVEEKEQIAVLQKSEKIVKTIVAAEKKLIQKFSQLKRE 358

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
             ++D+ D+      +L     +A I +    ++ N ILIDE QD + +Q  +I+++   
Sbjct: 359 QNLIDYSDMEQFAFSILTTDTSNAHIAQEYYQEKFNEILIDEYQDVNALQENIIKAI--- 415

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                       TLF VGD KQSIY F  A P   L +     K           I L  
Sbjct: 416 ------KKKGQNTLFMVGDVKQSIYGFRQARPDLFLSKYHTYGKD-----NDSEKIILAD 464

Query: 263 SFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
           +FRST  +   V+ +F+     N  G+       ++  +S          +   +     
Sbjct: 465 NFRSTKRVTKTVNDLFNPILTTNFGGIDYKKEGQLQFGASY---------YPSDLPTASE 515

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
                ++   S ++    +       + +   I  +   +    + +   KR ++  DI 
Sbjct: 516 YIFTDKKQTQSAYEDQYGDEMDFSEVQMVIARIKQLKAENFQVWDRRTQLKRPLEYSDIA 575

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           ++ R R D                + +   D         +  +M   R I + + D+  
Sbjct: 576 IITRTRSD----NLQVMQEFAKADLPLFVTDAQNYFQTFELIMIMNYLRLIDNPQQDIPL 631

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI--SKFQHVIKYIHELIHIA 495
           V +++SPLFNF E ++ +I  +              +       K +  ++ +  L   A
Sbjct: 632 VAVMRSPLFNFKEPELAQIRVKTPAGNFYTALTSFASVNSSLGKKCKEFLQQLETLRSFA 691

Query: 496 QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                 +    I       +       G +    L+         E   +  L + IS +
Sbjct: 692 ATHRISELIWSIYEKTHLLEIVTGLPNGQQRRVNLESLYERATSYESAGFKGLYQFISFI 751

Query: 555 EQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           E+                  N V++MT+H +KGLE P+VF++  G Q  +    +   I 
Sbjct: 752 ERMRKNQKDLAQPLLSDKADNAVKLMTIHASKGLEFPIVFVMGLGHQYQTRDLSRNFTIS 811

Query: 610 PSLND 614
            +   
Sbjct: 812 QNELG 816


>gi|322834953|ref|YP_004214980.1| ATP-dependent DNA helicase Rep [Rahnella sp. Y9602]
 gi|321170154|gb|ADW75853.1| ATP-dependent DNA helicase Rep [Rahnella sp. Y9602]
          Length = 674

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 100/734 (13%), Positives = 235/734 (32%), Gaps = 136/734 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I  + +L +E         A  ++        +++ +
Sbjct: 59  AAREMKERV-AQTLGRKEARGLLIATFHTLGLEIIKREF--AALGMKSNFSLFDDQDQLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K +  + +      L++ +    +    + D  +   + +S     
Sbjct: 116 LL------------KELSEKWLENDKTLLQQLVSTISNWKNDLVDPSHAAGLARSERD-- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +  +  + Y +  +   +LDF+DLI+    LL+  +    +R +   ++ ++L+DE QD
Sbjct: 162 QIFAHCYSLYHDHMRACNILDFDDLILLPTLLLQSNEE---VRERWQNKLRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L  +                VGD+ QSIYS+ GA P+ ++  K    + 
Sbjct: 219 TNTSQYMMVKLLVGN----------RARFTVVGDDDQSIYSWRGARPQNLVLLKEDFPQ- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RST  IL   + + +   +       S                
Sbjct: 268 -------LQVIKLEQNYRSTQRILKAANILIANNPHVFEKRLFSELA------------Y 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +  + V + ++   + +                                    + ++  
Sbjct: 309 GETLKVVTANNEDHESERVV--------------------------------GELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  +L R    + L   +        +I    +          IKDL+A  R 
Sbjct: 337 INKTAYGDYAILYRGNHQSRLFEKML----MQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + + +DD +F+ ++ +P        + K+        + +++              G+  
Sbjct: 393 LTNPDDDSAFLRIVNTPRREIGAATLQKLGEWANQRNKGLFKASFDMGLSQSLTGRGLES 452

Query: 481 FQHVIKYIHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
            Q    ++  +  +A+        D    +       +   S    E  +  +++  ++ 
Sbjct: 453 LQRFTHWMGNISELAEREPVAAVRDLIHGVDYESWLFETSPSPKAAEMRMKNVNQLFSWM 512

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  + +   +L ++++         +  +    ++V++MT+H +KGLE P V+LV 
Sbjct: 513 TEMLEGTDLDEPMTLTQVVTRFTLRDMMERGENDEELDQVQLMTLHASKGLEFPYVYLVG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       +   +E  RL Y
Sbjct: 573 MEEGLLPHQSSID-----------------------------------EDNVDEERRLAY 597

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA  +L            +  +      + +   +D   +  +   S  +      
Sbjct: 598 VGITRAQKELTFTLCRERRQYGELIRPEPSRFLLELPQDDLAWESERKVVSAQERMVKGQ 657

Query: 713 EWSTHHPENTPLER 726
                  E     +
Sbjct: 658 SHLEKIREQLAKAK 671


>gi|289209414|ref|YP_003461480.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288945045|gb|ADC72744.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 685

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 108/685 (15%), Positives = 214/685 (31%), Gaps = 143/685 (20%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  L+         +  SLL            ++    E++     +            
Sbjct: 100 AASGLRAGFSILDPGDCRSLLREITY-------RDDTGSEVDALIGHISRWKNDLMTPEE 152

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            + +        ++       A  L   YE+A +    +DF+DLI    D L+   V A 
Sbjct: 153 ALHEASQMRDAPEAIA-----AANLYPRYEDALRAYNAVDFDDLIKRPVDCLR---VDAD 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +    I H+L+DE QDT+  Q++++R L                L  VGD+ QSIY+
Sbjct: 205 LRNRWQDRIRHLLVDEYQDTNAAQYQLVRLLVGVSDG----------LTVVGDDDQSIYA 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ + R ++   +          +I+L  ++RST  IL   + + +   +     
Sbjct: 255 WRGARPENLARLQQDFPR--------LEVIKLEQNYRSTNRILHTANALIANNPHVFEKR 306

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW  +      +                  S A   A R
Sbjct: 307 ---------------------LWSALGEGEKIEVIGC--------------SDADTEAAR 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +            +     +      D  +L R    + L   L R       I    + 
Sbjct: 332 VVSE---------LMRRRFRLNATWGDFAILYRSNHQSRLFEKLLRE----QGIPYRLSG 378

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                +   IKDL+A  R + + +D+ +F+ ++  P        + K+         ++ 
Sbjct: 379 GQSFFEKAEIKDLVAYLRLLANPDDNTAFLRVVNVPRREIGPATLEKLGHYANQRGTSLL 438

Query: 468 EYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-- 519
           +  +             ++ +    ++          +       ++         +   
Sbjct: 439 QAARGAGLSEYMDARAQARLERFTDWVDGFQRRGTEEALDALLRALVEDIDYESWLLENS 498

Query: 520 ---RFGNEVIDVLDEFLNFT--------------LRNEQNSYSSLQELISELEQYPPTIK 562
              R     ++ + EF+++                  E +    L ++++ +       +
Sbjct: 499 PNPRAATRRMENVREFIDWVGRMGGGSTSAEYGDDEAEDDRGMDLADIVNRISLMDILDR 558

Query: 563 RAHSANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
              S + +  V+++T+HTAKGLE P V LV    ++  H                     
Sbjct: 559 NRESQDGDESVQLLTLHTAKGLEFPHVCLVGFEEELLPH--------------------- 597

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                            ++  + EE  RL YVG+TRA   L+I      S   ++     
Sbjct: 598 --------------RVSVEDDSIEEERRLAYVGLTRAQQTLLITYAQQRSRYGETIDCEP 643

Query: 682 YDMVYDSFHNDERVKKIKLTNSINK 706
              + +           K  +   +
Sbjct: 644 SRFLDELPEEHLEWPDAKPPDPETQ 668


>gi|229512505|ref|ZP_04401977.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TMA 21]
 gi|229350504|gb|EEO15452.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TMA 21]
          Length = 671

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 97/664 (14%), Positives = 222/664 (33%), Gaps = 135/664 (20%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRLLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +        M K       L  +    Y++  +    LDF+DLI+    LL+  +    +
Sbjct: 146 MLTPPQAKAMAKGEQQ--QLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKAL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S      +                                     +   ++    A R+
Sbjct: 303 FSELAEGEKL-----------------------------------KVILANNEDHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I          ++      + +D  +L R    + LI           ++    +  
Sbjct: 328 TAEI---------IAHKFLNRTEYRDYAILYRGNHQSRLIEKSL----TQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++ 
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFA 434

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               +   +++  +   A+  +  +    ++   +          
Sbjct: 435 ASFELGLEQHLGGRGLDNLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSS 494

Query: 520 --RFGNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEV 572
             +     +  + +  ++ + + +          L+E++  L       +   + + + V
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V+L+     +  H+                               
Sbjct: 555 QLMTLHASKGLEFPYVYLIGAEEGILPHQTSID--------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +   EE  RL+YVG+TRA  +L            +  + +    + +   +D
Sbjct: 588 --------EENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDD 639

Query: 693 ERVK 696
              +
Sbjct: 640 IEWE 643


>gi|222112307|ref|YP_002554571.1| uvrd/rep helicase [Acidovorax ebreus TPSY]
 gi|221731751|gb|ACM34571.1| UvrD/REP helicase [Acidovorax ebreus TPSY]
          Length = 689

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/636 (16%), Positives = 191/636 (30%), Gaps = 127/636 (19%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                + ++A       +   YEE       +DF+DLI     LL+       +R K  +
Sbjct: 153 AQDDHERSIAL------IMQRYEERLTAYQSVDFDDLIGMPMRLLRHHPE---VREKWQR 203

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            + H+L+DE QDT+  Q+E+++ L  +               AVGD+ QSIY + GA   
Sbjct: 204 LLGHVLVDEYQDTNATQYELLKYLVGE----------RARFTAVGDDDQSIYGWRGATLD 253

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            + +  +   +         ++I+L  ++RST+ IL   + V                  
Sbjct: 254 NLKKLPQDFPQ--------LNVIKLEQNYRSTSAILRAANHVIQPNPK------------ 293

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                         L+ + +     +  P +              +    A R    I  
Sbjct: 294 --------------LFPKTLFSELGEGEPVRVV---------DCDNEEHEAERAVARIQG 330

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           +                 K+  +L R            R       I    +      D 
Sbjct: 331 LRA-------ASNPPPAWKNFAILYRANHQAKPFEKALR----KANIPYKVSGGTSFFDR 379

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK-- 472
             IKDL A  R  ++ +DD +F+  + SP        +  +        ++++  +    
Sbjct: 380 AEIKDLCAWFRLWINNDDDPAFLRAVTSPRRGVGHTTLAALGEFATQHKQSMFGALFNAM 439

Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE 524
                   G+       + +++L H A+    H+    F    L      Q       +E
Sbjct: 440 LPAVIPKRGLEGLLEFGRTVNDLEHRARHTHGHEAARAFLADWLKDMGYEQHLYDSEDSE 499

Query: 525 -----VIDVLDEFLNFTLRNE------------QNSYSSLQELISELEQYPPTIKRAHSA 567
                    + EF ++  +              Q +  SL E+   +             
Sbjct: 500 KVAAARWSNVLEFCDWMAQRAGGQIDDTAGATVQAATKSLLEVAQTIALLS--TISEREQ 557

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + V + T+H +KGLE P V L      +                              
Sbjct: 558 EQDMVVLSTLHASKGLEWPHVILAGVTEGMLPF------------------------KLD 593

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
            ++     +        +E  RL+YVG+TRA   L +         ++         + +
Sbjct: 594 DDDGRQQKVSDDILQRLQEERRLMYVGITRAQRTLAVSWTKKRKKGREMVACQPSRFIAE 653

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
              +    ++          E  A +        TP
Sbjct: 654 MKLDAATARENPRDKLRQLREEFARKAQAAPSPATP 689


>gi|78049939|ref|YP_366114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78038369|emb|CAJ26114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 658

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 106/723 (14%), Positives = 225/723 (31%), Gaps = 146/723 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +          I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRI-RGDGADGLTICTFHALGLK--FLQIEHAAAGLKRGFSIFDSDDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMHGAKPDAIEDAKNLISRAKNAGLSPEQAMAAARSTREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L   Y+        +DF+DLI     +L+  +    I     + I ++L+DE QD
Sbjct: 162 --AAGLYERYQARLTTFNAVDFDDLIRLPVQILEANED---IVMGWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  IS +         G 
Sbjct: 310 IRVW--------------------------ECRDSEHEAEKVAAEISFL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    + L+    +           +   +KDL++  R 
Sbjct: 335 AKQVPWSDFCILFRGNFQSRPLEKALQLLR----VPYHLTGGTAFLERQEVKDLLSWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISK 480
           I++ +DD +F+  ++SP        + ++                    +Q       + 
Sbjct: 391 IVNPDDDAAFLRAVQSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + ++   +      +   L+           ++  +E         LDE    
Sbjct: 451 LSAFTDILRDMREHSSSMPAGELVRLLADKSGLLNDLRNQSKDETGFQRRKRNLDEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     +S  +L ++L       +       N+VR+MT+H +KGLE   VF+V   
Sbjct: 508 AEWFEGGPRGASASDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                      ++   +E  RLLYVG
Sbjct: 565 DGVLPHEVSL-----------------------------------EEGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA +QL +             +     ++D +       +    +       +     
Sbjct: 590 ITRAKEQLWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASAG 649

Query: 712 YEW 714
              
Sbjct: 650 LAA 652


>gi|237746116|ref|ZP_04576596.1| ATP-dependent exoDNAse beta subunit [Oxalobacter formigenes HOxBLS]
 gi|229377467|gb|EEO27558.1| ATP-dependent exoDNAse beta subunit [Oxalobacter formigenes HOxBLS]
          Length = 1253

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 124/1011 (12%), Positives = 282/1011 (27%), Gaps = 168/1011 (16%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             E +   L       V   N+Y + ++E+      +        +      +   L++  
Sbjct: 242  KETVKALLKDAAERNVLYRNRYKAPAIESAARAFDRFFAAGNAFAMIGNTAKT-ELMADT 300

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
             L+      + +            +       D  I+   +                   
Sbjct: 301  RLSGSTKKGQTVP-----------RHPFFGMADRLIETCRKRENALEAARYGLLKRFLAE 349

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                 +E K++   + F+D++ N  + L    +  W+   +  +    LIDE QDT  +Q
Sbjct: 350  ATVSLKEKKRERRTIAFDDMLANLYEALNDPGM-PWLAEAVRMQFPAALIDEFQDTDPLQ 408

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + +  ++  +             +F VGD KQ+IYSF  A+       +           
Sbjct: 409  YAIFSAVYREPESP---------VFLVGDPKQAIYSFRNADLHTYFAARENLDA------ 453

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +   L  + RS  +++   + +FS+ + A    +D    +  R  +           
Sbjct: 454  --LARYSLAENHRSVPELIAACNTLFSVNKRA--FLQDGLDFVPVRPGKRELPVLTD--- 506

Query: 313  QVVSQHDSQCNPQQESW---TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KK 368
               S       P    W       + L + ++       +A  ++ +I            
Sbjct: 507  --ESGDGPGPFPALCVWMLGQENGEWLKRSAARKQALEAMADEVARLINAGKAGKLAIGG 564

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R   A D+ VLVR  ++  ++    R       I  V   +  +      ++L  L   +
Sbjct: 565  RPAGAGDVAVLVRSHREAAMV----RQALARRGIGSVSLSQESVFQSREARELECLLFAM 620

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L+ +D+   +  + + +       I  +                      +     I   
Sbjct: 621  LTPDDESLLMAAVSTEMIGLDAGAIEALA------------------GDEAALSGWIGRF 662

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNS--YS 545
             +     +          ++  +    + ++    E     L   L    R         
Sbjct: 663  GQYRRAWRENGAACALRWLIHREGVVSRLLAFADGERRLTNLMHLLELVGRESGTENAPD 722

Query: 546  SLQELISELEQYPPTIKR---AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            SL    +E  +     +        + + V++MT+H +KGLE P VF            +
Sbjct: 723  SLMRWYAERREGKKKAEEEELRLETDRHLVQVMTLHRSKGLEFPFVFCPLLWDNFPRRGN 782

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                 +        G    +   K  ++    + K+       E  RL+YV +TRA  + 
Sbjct: 783  ETGEGLEYH----EGHATVVDYRKLADDEQETVRKNAALERAAEDMRLIYVALTRAVYRC 838

Query: 663  IICK------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN---------SINKD 707
             +             +E K+   +   ++      D       L            + + 
Sbjct: 839  YLVAGCYVRVTRRGESETKTTTESRKSLLNWLVAGDGFAPPDWLAAKDGKKEETVLLPEP 898

Query: 708  EWIAYEWSTHH---PENTPLEREETIKQLMDEQKIPKKLFSPIK---------------- 748
            E I   W +     P        +++   +D       L +  +                
Sbjct: 899  EQIGSAWESLASRCPHIAVTALPDSVGATVDASDETATLLTAARFDKTVGTGWRMNSFSG 958

Query: 749  --------------NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
                          ++      L+  + +         +L   +    G  +H + +   
Sbjct: 959  LMRNAVDDTETGDHDERALFAGLSGLSENRPEALPANDILLFPKGTYAGSCLHAVFENAD 1018

Query: 795  TLPEHKRKNFITSYCTKN-----AKLWPAKE------YKNLLLSITRLLENPM-----MT 838
               E   +  + S   +       KL    E          L  +  ++  P+     + 
Sbjct: 1019 FTDESTWEKAVESALKQFPQRVGGKLLSGAEEGQAVLKGRALKMLGDVMATPLPDGICLG 1078

Query: 839  TAMSCDSYSEVSV----------------------SGKINCPKKDIIISGRIDQISISQQ 876
               +    +E                           ++        ++G +D +     
Sbjct: 1079 NVGNGRRLTEWPFCLAAARLSAKRLNRLVKKSGYAVPELAFDDMTAYLNGFVDLVFEMDG 1138

Query: 877  NIFIFEYKTHHHVPQEIE--------HIPYT-HIAQLSIYEKILKDSYPNK 918
              ++ ++K++H   +  +         +    +  Q  +Y   L      +
Sbjct: 1139 RFYLLDWKSNHLGYRPEDYGIARIETEMAEHGYHWQYLLYTVALHRYLSGR 1189


>gi|294664984|ref|ZP_06730294.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325925624|ref|ZP_08187008.1| ATP-dependent DNA helicase Rep [Xanthomonas perforans 91-118]
 gi|292605232|gb|EFF48573.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|325543973|gb|EGD15372.1| ATP-dependent DNA helicase Rep [Xanthomonas perforans 91-118]
          Length = 658

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 106/723 (14%), Positives = 225/723 (31%), Gaps = 146/723 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +          I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRI-RGDGADGLTICTFHALGLK--FLQIEHAAAGLKRGFSIFDSDDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMHGAKPDAIEDAKNLISRAKNAGLSPEQAMAAARSTREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L   Y+        +DF+DLI     +L+  +    I     + I ++L+DE QD
Sbjct: 162 --AASLYERYQARLTTFNAVDFDDLIRLPVQILEANED---IVMGWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  IS +         G 
Sbjct: 310 IRVW--------------------------ECRDSEHEAEKVAAEISFL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    + L+    +           +   +KDL++  R 
Sbjct: 335 AKQVPWSDFCILFRGNFQSRPLEKALQLLR----VPYHLTGGTAFLERQEVKDLLSWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISK 480
           I++ +DD +F+  ++SP        + ++                    +Q       + 
Sbjct: 391 IVNPDDDAAFLRAVQSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + ++   +      +   L+           ++  +E         LDE    
Sbjct: 451 LSAFTDILRDMREHSSSMPAGELVRLLADKSGLLNDLRNQSKDETGFQRRKRNLDEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     +S  +L ++L       +       N+VR+MT+H +KGLE   VF+V   
Sbjct: 508 AEWFEGGPRGASASDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                      ++   +E  RLLYVG
Sbjct: 565 DGVLPHEVSL-----------------------------------EEGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA +QL +             +     ++D +       +    +       +     
Sbjct: 590 ITRAKEQLWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASAG 649

Query: 712 YEW 714
              
Sbjct: 650 LAA 652


>gi|312623315|ref|YP_004024928.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203782|gb|ADQ47109.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 954

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 127/798 (15%), Positives = 288/798 (36%), Gaps = 100/798 (12%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           L ++ ++  T +LL   +V+  I         ++++DE QD++ +Q  +  ++ E     
Sbjct: 185 LTYDLVLQRTFELLNIPEVNRDI----KTRFKYLIVDEFQDSNFLQKSIFENIAE----- 235

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    ++ +GD+KQSIY F GAEP+                     ++EL  +FR+
Sbjct: 236 --------NIYYIGDKKQSIYRFQGAEPEVFDE----------AIENSNQVLELCENFRT 277

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            ++       +    +    +   S   + ++    G +  V++                
Sbjct: 278 NSE-------LGKKIDKIASILFPSYKPLSYKHQADGFLKIVEIV--------------- 315

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRK 384
                   +  +E+     A  +A  I  M+      S G   +R ++  D  VL RK  
Sbjct: 316 --------NETKENIIQNEAIYVAKKIKEMVADGVTISVGGKPERRVKYSDFAVLSRK-- 365

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
               I  + + +  +Y+I +  N R  L++   I  L+     +   +    ++ +L + 
Sbjct: 366 -IQSIAHVYKKVFEEYEIPLDINFRRGLSEQKEIVPLLGFLEILQYPDKKSGYLRLLAND 424

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
           +F      +      + E+                  + V+K+I +           +  
Sbjct: 425 IFKVDRFTLLFCEMSKIESYVP---------------EDVLKFIAKQRDNLFVKKISEIL 469

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                  +   +    FG    + +  F +     E+++  SL++L++ +      +   
Sbjct: 470 YEFEDMFEYSYKVYKYFGKAAYENVRLFYDLA---EESNSFSLEDLLNFINNQGEKMSGY 526

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGS--QVFSHKHIKKMHIMPSLNDDPGIPIWI 622
            + + + V ++++H+AKGL  P+VFLV        F  +  K      +   +  I  + 
Sbjct: 527 SALD-DSVVLISIHSAKGLSFPIVFLVGLCESTGYFPGRSPKLRGSYDTSTKEYIIAPFW 585

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII--CKHSNTSNEKKSNQRT 680
            +        + +    K+  +EE  RL YV +TR    + +       T  ++  ++  
Sbjct: 586 IEK-----EYTRIKNISKQQEKEELKRLFYVAITRPMAGIFMINSTIKETVKKRGGSKSF 640

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
             ++ ++          I+    I K+E    +       N  +        L DE +  
Sbjct: 641 GEEVGFNYILEKAEEIGIEKEVVIMKEEEKTSQGFDLSSGNNSISYTLPSIILPDEFENR 700

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ----TFNRGLIIHKLLQVIFTL 796
            K+ SP      +   +  S     G    +   S  +        G  +H++L+ +  +
Sbjct: 701 FKILSPSHIMDFKKCPVMFSLKYIMGLPVFDEQSSKEELQQNAKVLGTTVHRVLE-LTKI 759

Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
            +    + + S  +        ++ + +   +    ++  +          E     +  
Sbjct: 760 KDIDDIDNLESNISLAVIENDFEDKELVRKLVFNYFKSSFIREIKDKIIREES--EHRFY 817

Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
               + II G ID++   +  I++ ++KT+ +   +      ++I QL IY + +K   P
Sbjct: 818 YKLGNQIIYGIIDKVYYLENKIYLIDFKTNLNFDLKK---FESYIPQLCIYTQAIKQREP 874

Query: 917 NKSLVCLLIYVSEPKVFI 934
            K ++  + ++ E K F 
Sbjct: 875 QKDIISSIFWLREGKSFE 892


>gi|301163214|emb|CBW22764.1| putative helicase [Bacteroides fragilis 638R]
          Length = 1057

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 115/813 (14%), Positives = 252/813 (30%), Gaps = 99/813 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    +  ++N       L+ +TN LL +      S+++  KI   I +++ID
Sbjct: 337  VRLLTNIDEEVRQLNRENNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIRNVMID 392

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  + L  +                VGD KQSIY +   +   +    + 
Sbjct: 393  EFQDTSRMQWDNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLNKQ 446

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                            L  + RS  +I+   + +FS   +      +             
Sbjct: 447  LGYF------SIRTETLKTNRRSETNIIRFNNSIFSAAVDYLNEMYNKQLGSICEPLINA 500

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   Q      + +   +          +   + +++ +    
Sbjct: 501  YA--------DVEQESPRNKQQGYVKVEFLEPDEEHDYTEQTLISLGMEVEHLLQSG--- 549

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   ++  DI +LVRK K  P I              +V ++ F L   LAI  ++ 
Sbjct: 550  -------VKLNDIAILVRKNKSIPRIADYF---DKQLNYKIVSDEAFRLDASLAICMMLD 599

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
              R++   E+ +    +        +   +  + ++      +    ++           
Sbjct: 600  ALRYLSDPENRIVKAQLA-------TNYQLQILHSEYDLNSLLLHKAEELFPP------A 646

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             ++ + EL         ++    +    +  +        +    L  F +      Q+ 
Sbjct: 647  FLERMAELR----LMPLYELLEELFSLFELHR------IEQQDAYLFAFFDAVTDYLQSH 696

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S     I    +   + K   S     +RI ++H +KGLE   V L     +  +  + 
Sbjct: 697  SSDPDSFIRYWNET-LSGKTIPSGEVEGIRIFSIHKSKGLEFHTVLLPFCDWKQENETNN 755

Query: 604  KKMHIMPSL--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            + +  +P     ++  I      S    ++      H +     +   LLYV  TRA   
Sbjct: 756  QLVWCVPQEAPFNELDIVPVNYSSAMAESVYRTDYLHERLQLWVDNLNLLYVAFTRAGKN 815

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            LII    +   ++ +        +  + +  ++    +    +        E        
Sbjct: 816  LII---WSRKGQRNTMAELLTGALPQAANKLDQEWDEEQVYELGDLCPSENEKKIDSGNK 872

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
               + E+    +       +                  S         L    SD++  N
Sbjct: 873  LTRKPEKLPVNMESMHPDIE---------------FRQSNRSADFIKGLSEEESDDRFIN 917

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
             G ++H L   I    +   +  I         +   +  K +     +    P +    
Sbjct: 918  HGQLLHTLFSAIE--TKDDIEPAIQRLI-FEGIIGSKEAEKQIRSLTVKAFSLPEVQEWY 974

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
            S +    +     I    K ++ + R D++ +  + + + ++K               + 
Sbjct: 975  SGEWR--LFNECAIIYKDKGVLQTRRPDRVMMKNEQVVVVDFKFGKAN--------KKYN 1024

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
             Q+  Y ++L      K++   L YV E ++  
Sbjct: 1025 KQVKGYMQLLSRM-GYKNITGYLWYVEE-EIIE 1055


>gi|323177788|gb|EFZ63372.1| ATP-dependent DNA helicase Rep [Escherichia coli 1180]
          Length = 643

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/673 (15%), Positives = 221/673 (32%), Gaps = 133/673 (19%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 67  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 124

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 125 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 169

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R +   +I ++L+DE QDT+  Q+E+++ L            S      VGD+ QSIYS
Sbjct: 170 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG----------SRARFTVVGDDDQSIYS 219

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA P+ ++   +              +I+L  ++RS+  IL   + + +   +     
Sbjct: 220 WRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVFEKR 271

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                                   E        +   ++    A R
Sbjct: 272 LFS-----------------------------------ELGYGTELKVLSANNEEHEAER 296

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +         T  + ++      Q KD  +L R    + +            +I    + 
Sbjct: 297 V---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISG 343

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVY 467
                    IKDL+A  R + + +DD +F+ ++ +P        + K+        ++++
Sbjct: 344 GTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMF 403

Query: 468 EYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                              +++F H +  I  L       +  D    +       +   
Sbjct: 404 TASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSP 463

Query: 519 SRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
           S    E  +  +++  ++        E +   +L ++++         +       ++V+
Sbjct: 464 SPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQ 523

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H +KGLE P V++V        H+                                
Sbjct: 524 LMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------------------- 555

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  +   +E  RL YVG+TRA  +L            +  +      + +   +D 
Sbjct: 556 -------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDL 608

Query: 694 RVKKIKLTNSINK 706
             ++ +   S  +
Sbjct: 609 IWEQERKVVSAEE 621


>gi|153952234|ref|YP_001397786.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939680|gb|ABS44421.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 691

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/479 (19%), Positives = 180/479 (37%), Gaps = 86/479 (17%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ 
Sbjct: 173 ANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNT 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +     
Sbjct: 230 LQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN---- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS   IL   + + S  E   G +                      
Sbjct: 276 ----VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKT---------------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++   +     ++     + L            IA  +  ++ ++          
Sbjct: 310 --LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKLLNSE---------- 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++AK+I VL R    +  I       K    IS          + L IKDL++  R IL+
Sbjct: 347 VEAKEIAVLFRVNALSRAIEEAFMKEK----ISYKLLSGMRFYERLEIKDLISYLRLILN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKF 481
             DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++ 
Sbjct: 403 PNDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQNEA 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I+ IH L          D    +   K    +     G+E I  LDEF        +
Sbjct: 463 NIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIRNLDEFYANLREKLK 520

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL++L+SE+                 V +M++H +KGLE   VF++      F 
Sbjct: 521 EDPEASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFP 575


>gi|72160927|ref|YP_288584.1| ATP-dependent DNA helicase [Thermobifida fusca YX]
 gi|71914659|gb|AAZ54561.1| putative ATP-dependent DNA helicase [Thermobifida fusca YX]
          Length = 1044

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 145/962 (15%), Positives = 280/962 (29%), Gaps = 138/962 (14%)

Query: 8   SLNESYELIYKDLWPLPYFQVS-DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   L       ++   + Y    +      +   A  L   S  + + E  
Sbjct: 77  AAQELRERITARLRRTVREPLALTFHSYAYALIRREFQRVGDHAPRL--LSGPEQLMEVR 134

Query: 67  SLLSSFFLTQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            LL            + +         + +L++ L + Q+  +   D     +       
Sbjct: 135 ELLKGELADGAPGWPEQLRPMLHTRGFAEELRDFLMRVQERGLHADDVRELGRRHGRED- 193

Query: 126 SLTLAKYLNAHYEEAKKKNCV--LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               A      Y        V   ++ +L+    +LL   D    I+ +       + +D
Sbjct: 194 -WVAAGGFLERYTGRFDIAPVPTFNYAELVRVAANLLNDPD----IQARERAARKVVFVD 248

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT   Q E++ +L  D           R L  VGD  QSIY F GAE + +L     
Sbjct: 249 EYQDTDPAQEELLHALAGD----------GRDLVVVGDPDQSIYGFRGAEVRNILNFPDR 298

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR-HRSSRI 302
            +   T  G    ++ L    RS A++L V   +        G   +     R    +  
Sbjct: 299 FR---TPTGDPAPVVALHTCRRSGAELLRVSRALAQRLPAVPGPGGEGVNAHRNLVPAEG 355

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              G  ++       H+                              A  I++++    +
Sbjct: 356 TPPGRARMLLAESPVHE------------------------------AAVIADLLRRAHL 385

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFILTDHLAIKDL 421
                   +    + VLVR          + R       + V V  D   L     ++ +
Sbjct: 386 ID-----GVPWSRMAVLVRSVT---RHVPVLRRALIAADVPVTVDGDDLPLASEPLVRSM 437

Query: 422 MALGRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----------- 468
           + L R     E  D+ +   +L S         + ++     + E               
Sbjct: 438 LLLLRCAFHPERLDEEAAHNLLTSAFGEADALGLRRLGRALRQLELDAGGRRPAAALLAE 497

Query: 469 --YIQKFANCGISKFQHVIKYIHELIHI-----AQFCSPHDFFTLILGAKKGRQQFIS-- 519
             +  +       + +   + I  L+ +     A+  +  +    +          +   
Sbjct: 498 ILHDPRDLVMVDPEVRAPAERIATLLRLVRDSIAEGANAEEVLWRMWHHSGLADTLLRAS 557

Query: 520 ----RFGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPP--TIKRAHSANH 569
               R G      LD          R  ++    S +  + +LE            +   
Sbjct: 558 QAGGRHGAAADRELDSVMALFERAARYCDRLPPGSPEGFLEDLEAQEIPGDTLAEQAPQG 617

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             VRI+T H +KGLE  +V +       +    ++   +      D           +  
Sbjct: 618 ETVRILTAHRSKGLEWDLVVVAGVQEGTWPDLRLRGSLLGVEQLLD-----------TVG 666

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                    +     +E  RL YV +TRA  +L++        E++ ++      + +  
Sbjct: 667 GFAETSPAAVVSKQLDEERRLFYVALTRARRELVVTAVGGEDVEERPSRFLTELGLGEPE 726

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI--------KQLMDEQKIPK 741
                 + + L   +        +  T  P                       +   + +
Sbjct: 727 RLATGYRWLSLPALVADLRATLLDPHTDEPVRRAAAAHLARLADAGVRGADPAEWYALTE 786

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN-------RGLIIHKLLQVIF 794
              S       E   ++PS ++      L  LL               G I+H L ++  
Sbjct: 787 LSDSSPLVLEGEQIRISPSQVEKFTTCELRWLLETAAGAEKRRAASGIGSIVHALARIAA 846

Query: 795 TLPE----HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
             P+     +R + I S        +  K+ +     + R L+          +    V+
Sbjct: 847 ENPDLPELLRRMDQIWSDLDFGGPWYAEKQRERAEEMLQRFLD------WQKENPRELVA 900

Query: 851 VSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
              K      +I ISG++D++    +    I + KT   VP            QL +Y+ 
Sbjct: 901 TEKKFRVEVGNIEISGQVDRLERDAEGRGVIVDIKTGTAVPDREISR----HPQLGVYQL 956

Query: 910 IL 911
            L
Sbjct: 957 AL 958


>gi|299531352|ref|ZP_07044762.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni S44]
 gi|298720759|gb|EFI61706.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni S44]
          Length = 1270

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 131/986 (13%), Positives = 286/986 (29%), Gaps = 146/986 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             + L      +   + +++   ++       K+     QA          ++ +   L +
Sbjct: 242  LQALADGWEAKAERMLRWIEGELDGRAALWDKRKL---QARYYTGWFTALTVWAQDPLNR 298

Query: 77   KFTP----QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL--A 130
                    +K +  + + +        L     EF ++           S   +L L  A
Sbjct: 299  SLELSDSARKRLSPEGMAEAFKGSTMDLL-LPTEFSELEQLLKALTELPSIKVALRLHAA 357

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             ++       K++     F D+    +  L   +  A ++  I  +    LIDE QDTS 
Sbjct: 358  VHVQQRLLWLKRQAGTFGFADMQQRLDAALAGDNGPA-LQAGILAQYPVALIDEFQDTSP 416

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +Q+ +   +          +S+   L  +GD KQSIY F GA+    L+ ++        
Sbjct: 417  LQYRLFDQIYR-----TADNSAGSALLLIGDPKQSIYGFRGADIYSYLQARQA------- 464

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
               +     L  +FRST  ++  V++ F   E  +G         +        V     
Sbjct: 465  --TEGRHYVLDTNFRSTEALVDAVNQWFVQAEVREGEGAFMFRAGQSNPLPFESVKANGR 522

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI---GTDTIFSNGK 367
             E ++               S  + L  +      A   A  I   +    T    +   
Sbjct: 523  KELLMQGSQRMAALTIAWDGSSDEPLSNDDIRRRGAEFCASQIVQWLMDGATGFAEAGQP 582

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             + ++  DI VLVR  K+   +      L      SV  +D+  +      +DL+   R 
Sbjct: 583  LQRLRPADIAVLVRTGKEAAAVRRA---LARRNVASVYLSDQDSVFASGEAQDLLLWLRA 639

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D L+    L +P+   S D++  + +         +      +  + +   + + 
Sbjct: 640  VAAPLDGLAVRAGLATPMMGLSFDELAWLASD--------DEAFDARSELLKELHSLWQR 691

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +  L  + Q     +     L    G ++  +         L E L       +   + +
Sbjct: 692  LGVLAMLRQTLYRFELPARWLKDMGGERRLTNYL------HLAELLQGASAQLEGEQALI 745

Query: 548  QELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            + L +++E              ++ + V+++TVH +KGLE P+V L   GS         
Sbjct: 746  RWLATQIESPGAAGDAQIVRLESDADLVKVVTVHKSKGLEYPLVCLPFGGSFRPVDGKAA 805

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
             + +   ++         P  +   +     +    K    E  RLLYV +TR    L +
Sbjct: 806  YLSLPVQIDG-------APARELVLDYDDAQLAQADKERLREDLRLLYVALTRPRHALWM 858

Query: 665  CKHSNTSNEKK------------------SNQRTWYDMVYDSFHNDERVKKIKLTNSIN- 705
                      K                      +W   +        ++  + L   +  
Sbjct: 859  GLAPMKRGNSKNCVNEQGAAGYLLAGDVSQAAASWRASIQALSERCTQIAVVDLPAELPV 918

Query: 706  -----------------------KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                                      W    +S+                     +  + 
Sbjct: 919  ASRYVAAQALPALAAAPVYEAQFDRRWGIGSFSSLTRAMAAPSLPVLPVAAQSPAEDERA 978

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF---------NRGLIIHKLLQV- 792
            L +    +      +    +         +  + +              G  +H  L+  
Sbjct: 979  LQAQEAGEAALDLGVINDVMTALPNLTRFAAGARSDAAVWHRFMRGPVVGNFLHDQLEWL 1038

Query: 793  -------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTT 839
                   +        +        +  +    ++  ++L  +  ++  P+      +  
Sbjct: 1039 AAEDFALLPEDDPGNSEPLAARLLRRCERAGRKEQAADVLQWLRAVVHQPLAPLGVSLAQ 1098

Query: 840  AMSCDS-YSEVSVSGK-------------------------INCPKKDIIISGRIDQISI 873
                D+   E+                              +   +   ++ G  D +  
Sbjct: 1099 LGEGDALLPEMEFWLPARRLSAPGIDALCRRHILAGQPRPVLPERELHGMLMGFADLVFH 1158

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYT 899
                 ++ +YKT+H       + P  
Sbjct: 1159 HGGRYWVLDYKTNHLGQDGAAYAPQA 1184


>gi|259906859|ref|YP_002647215.1| ATP-dependent DNA helicase Rep [Erwinia pyrifoliae Ep1/96]
 gi|224962481|emb|CAX53936.1| ATP-dependent DNA helicase Rep [Erwinia pyrifoliae Ep1/96]
          Length = 673

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 107/646 (16%), Positives = 215/646 (33%), Gaps = 121/646 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K++  Q +      L++ +    +    + D         S      L  +  A
Sbjct: 112 DQLALLKDLTEQWLENDKNLLQQLVSTISNWKNDLMDPPRAAAGALSERD--KLFAHCYA 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K   VLDF+DLI+    LL++      +R +  Q I ++L+DE QDT+  Q+E+
Sbjct: 170 LYDKHLKSCNVLDFDDLILLPTLLLQRN---VDVRERWQQRIRYLLVDEYQDTNTSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L            +      VGD+ QSIYS+ GA P+ ++  +              
Sbjct: 227 VKLLVG----------ARARFTVVGDDDQSIYSWRGARPQNLVLLQEDFPA--------L 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +       S                        
Sbjct: 269 QVIKLEQNYRSSERILKAANILIANNPHVFEKRLFS------------------------ 304

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                      E        +   +     A R+   I  +I    I         Q KD
Sbjct: 305 -----------ELGYGAELKVVTANHEDHEAERV---IGELIAHHFI------NKTQYKD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + +   +        +I    +          IKDL+A  R + + +DD 
Sbjct: 345 YAILYRGNHQSRVFEKML----MQNRIPYHISGGTSFFSRPEIKDLLAYLRVLTNADDDS 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++            A  G+   Q    ++
Sbjct: 401 AFMRIVNTPRREIGSATLQKLGEWAMQRNKSLFTASFDVGLGQTLAGRGLESLQRFTHWL 460

Query: 489 HELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQ--- 541
            E+  +A+        D    +       +   S    E  +  ++    +     +   
Sbjct: 461 QEIARLAEREPVAAVRDLIRGVDYESWLFETSASPKAAEMRMKNVNTLFQWMTEMLEGSD 520

Query: 542 -NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +   +L ++++         +       ++V++MT+H +KGLE P VFLV     +  H
Sbjct: 521 IDEPMTLTQVVTRFTLRDMMERGESDEESDQVQLMTLHASKGLEFPYVFLVGMEEGLLPH 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                       ++  EE  RL YVG+TRA  
Sbjct: 581 QSSID-----------------------------------ENNVEEERRLAYVGITRAQK 605

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +L            +  +      + +   +D + +  +   S  +
Sbjct: 606 ELTFTLCRERRQYGELVRPEPSRFLLELPQDDLQWESERKVVSAEE 651


>gi|239907370|ref|YP_002954111.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239797236|dbj|BAH76225.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 646

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 94/566 (16%), Positives = 180/566 (31%), Gaps = 125/566 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YEE K    + DF+DL++     L     +     K      HIL+DE QDT+
Sbjct: 184 TAMVFKEYEEQKTIRYLYDFDDLLLQAYRFLAHEGGAE----KYHDVYPHILVDEYQDTN 239

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q  V+++L  +        S   + +A GD+ QSIY+F+GA    +LR K+I      
Sbjct: 240 PAQLAVLQALIAE--------SGRGSFWACGDDWQSIYAFNGASIGNILRFKQIFP---- 287

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I L +++RST  IL    K+    +        +              G   
Sbjct: 288 ----SAQEIVLNVNYRSTPAILAACQKLIDHNQRKIPKELIAHKP----------GGNHD 333

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L+       + +                        A  +A  I ++             
Sbjct: 334 LFVIDTFNEEEE------------------------ACLVANEIKHL---------SVSD 360

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D+ VL R    +     + + +     I    ++     +   ++ L+   RFI 
Sbjct: 361 GTAYSDMAVLYRANFQS----EILQNVFVRADIPFYIDNGMSFYERREVRILLDYLRFIE 416

Query: 430 SQED---DLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC---GISKFQ 482
             +    D +   ++ +P     +  + ++         ++Y+ ++              
Sbjct: 417 DPDSVAGDEALQRIINAPNRYLGKKFMEQVAGVANESACSLYQALRTMDFDSPYIRRNVH 476

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLR 538
             ++ +   I       P +    +       +           N+ +  L++ L    R
Sbjct: 477 EFVRLMESFIQNEGEMGPAEVLAKLRQRLDYDRFVTDKDIPSPDNQAVLNLNQLLQSAAR 536

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 +S+ E ++ +             + + V++MT+H AKGLE PVVF+V     + 
Sbjct: 537 Y-----ASISEFLTYVATVEDETCSR---DPSGVKLMTIHKAKGLEFPVVFVVGLVEGIM 588

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             K                                           EE  R+ +V ++RA
Sbjct: 589 PTKRG---------------------------------------DLEEERRICFVALSRA 609

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDM 684
            D+L +    N   +         +M
Sbjct: 610 MDRLYVTYSHNYLGQPAKRSIFIDEM 635


>gi|297581602|ref|ZP_06943524.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC385]
 gi|297534009|gb|EFH72848.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC385]
          Length = 671

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 222/664 (33%), Gaps = 135/664 (20%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRLLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +        M K       L  +    Y++  +    LDF+DLI+    LL+  +    +
Sbjct: 146 MLTPPQAKAMAKGEQQ--QLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKAL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S      +                                     +   ++    A R+
Sbjct: 303 FSELAEGEKL-----------------------------------KVILANNEDHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I          ++      + +D  +L R    + LI           ++    +  
Sbjct: 328 TAEI---------IAHKFLNRTEYRDYAILYRGNHQSRLIEKSL----TQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++ 
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFT 434

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               +   +++  +   A+  +  +    ++   +          
Sbjct: 435 ASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSA 494

Query: 520 --RFGNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEV 572
             +     +  + +  ++ + + +          L+E++  L       +   + + + V
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V+L+     +  H+                               
Sbjct: 555 QLMTLHASKGLEFPYVYLIGAEEGILPHQTSID--------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +   EE  RL+YVG+TRA  +L +          +  + T    + +    D
Sbjct: 588 --------EENVEEERRLMYVGITRAQRELTLMVCKERRQFGELIKPTQSRFLDELPQED 639

Query: 693 ERVK 696
              +
Sbjct: 640 IEWE 643


>gi|325269864|ref|ZP_08136474.1| helicase [Prevotella multiformis DSM 16608]
 gi|324987837|gb|EGC19810.1| helicase [Prevotella multiformis DSM 16608]
          Length = 1099

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 118/886 (13%), Positives = 269/886 (30%), Gaps = 85/886 (9%)

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK-----IRDRFNTYKMFKST 123
              +  +                    DL      +  + ++         + +  +  + 
Sbjct: 278  YVNACIEDAGKWPSGDCPAAEKAAITDLASTALCADLKLLERYRTEGWKEYQSSNLTLTH 337

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHI 180
            L+ L L   ++   +E  K         ++ NT  LL    +   + ++  K+   + HI
Sbjct: 338  LSQLRLLHAISEAVDEINKDTNRF----MLSNTQSLLSTLMRDSDTPFVFEKMGAYLKHI 393

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            +IDE QDTS IQW+  R L ++     ++H+       VGD KQSIY +   + K +   
Sbjct: 394  MIDEFQDTSTIQWKNFRKLLDNCMAQIDSHN-----LIVGDVKQSIYRWRQGDWKLLNNI 448

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +           ++  I  L  ++RS  +I+   +  FS+  +      ++         
Sbjct: 449  EHDF------HDEQIRIQPLDTNYRSEENIIRFNNAFFSLAVSRTVKELETDEI------ 496

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    + ++++                 ++    ++     +   +   +  ++   
Sbjct: 497  -RDADQLTEAYQEIEQHPKKNDGKGCVRVKLFYCGRNEKEYRENILGELTDNVRELLSHG 555

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLIT-FLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                       + KDI +LVR +     I          +  I  V ++ F L   LA+ 
Sbjct: 556  ----------YKQKDIAILVRSKGVIQAIADEFLHEFGTEVGI--VSDEAFRLDASLAVN 603

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
             ++     +  +ED      + +S L    +  + +     +      +     +     
Sbjct: 604  VIVYALHLLTHRED-----RLTESKLVKLYQQQVLQTGMDDNTLFVDNDTPSTRSLLPKG 658

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
                    +          S  D    I          + R   +    +  F +     
Sbjct: 659  YTSRFETLLR--------MSLVDLVDEIYALFN-----LDRLEGQS-AYVCTFYDTLNEY 704

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             ++  + + + I E +    +         + +R++T+H +KGLE   V +      +  
Sbjct: 705  LRDHPADIDDFIEEWDNTLSSNTIQSDEV-DGIRLITIHKSKGLEYDNVLIPFCDWDLEK 763

Query: 600  HKHIKKMHIMPS----LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                                P IP+   ++     +  +  K        +   LLYV  
Sbjct: 764  KSGNTIWCPGDDKEMPYGKLPLIPVDFSKNSMMGTVYENDYKEEHLQNTVDNMNLLYVAF 823

Query: 656  TRASDQLIICKHSNTSN--EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            TRA   L I     +    ++     T  +           +       ++         
Sbjct: 824  TRAGKNLFITGKRASKKRFKELQEGGTASNRSQIIQLILNDLTAELHGATLEDRGEKEPL 883

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                   +   ++    +   +  +I  +  +        P     S          +  
Sbjct: 884  VFEMGSLSDSTQKTGKGRDSTNPFEITPETHTLKIETFPHPVSFRQSNKSHDFINGEDLE 943

Query: 774  LSD-NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
            L D ++    G I+H+L   I  L +   +  +                K L   I++ L
Sbjct: 944  LPDASRYIKMGNILHQLFSTI--LTDSDIQPRLKELEQAGIVYNDEVTSKELKERISQAL 1001

Query: 833  ENPMMTTAMSCDSYSEVSVSGK-INCPKKDIIIS-GRIDQISISQQNIFIFEYKTHHHVP 890
            +N  + +  S     ++      +   K+   +   R D++    + + + ++K      
Sbjct: 1002 KNEQVKSWFSP--RWKLFNECTILEYDKETGEVRENRPDRVMTDGKEMIVVDFKFGKP-- 1057

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
                     +  Q+  Y K+L      + +   + YV   +V  +P
Sbjct: 1058 ------RKEYREQVQRYMKLLTSM-EYRQVSGYIWYVVRNEVVPVP 1096


>gi|42527836|ref|NP_972934.1| ATP-dependent DNA helicase UvrD [Treponema denticola ATCC 35405]
 gi|41818664|gb|AAS12853.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola
           ATCC 35405]
          Length = 745

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 115/687 (16%), Positives = 207/687 (30%), Gaps = 155/687 (22%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI-----EERFSLLSSFFLTQ 76
           P     V+  NK      E  +    +  + + +   +           ++ LS  F   
Sbjct: 54  PERILAVTFTNKAAKEMSERASNLDKRAERAMIRTFHSFGAWILRMYAEWAGLSHNFTIY 113

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK--IRDRFNTYKMFKSTLASLTLAKYLN 134
                 +++TQ     + +    + K         +       +              + 
Sbjct: 114 DDDDALSLLTQASPALTKNAARGIIKKISRAKDYCLLPDDPLLQEVDPNPEF----AKIY 169

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           A Y++  K+   +DF DLI+    LLK+      IR  I    + I++DE QD+++ Q+E
Sbjct: 170 ADYQKRLKETGNVDFGDLIMIPVMLLKENP---QIRASIQNRFSVIMVDEYQDSNIAQFE 226

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++ LT +             +  VGD+ QSIY F GAE + +L      +         
Sbjct: 227 FLKVLTGENTY----------ICVVGDDDQSIYRFRGAEVQNILTFADTFKN-------- 268

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             II+L  ++RS ++IL V D V        G +  +      +                
Sbjct: 269 TKIIKLEKNYRSYSEILAVADSVVKKNTGRLGKTLVAERGKGQKPHIYFLP--------- 319

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                  QE+ A + AR I+  + N                   
Sbjct: 320 ----------------------NQETEAELCARLISQEVEN--------------GGAYS 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  VL R    +          K    I           +   IKD +A+   I +  D+
Sbjct: 344 DWAVLYRTNAQSLNFETDFLHKK----IPYQVIGTLKFYEREEIKDALAVLALISNGRDE 399

Query: 435 LSFVCMLKSPLFN---FSEDDIFKICTQRHETETVYEYIQKFANCGISK----------- 480
           ++   ++  P       ++  +  +  +   ++   E + +  +  IS            
Sbjct: 400 VALRRIINKPARGVGEITQKKLIDLSRELMFSQKSDELMLESKDDYISAMSVLMNSVSLT 459

Query: 481 ------FQHVIKYIHELIHIAQFCSPH------------DFFTLILGAKK---GRQQFIS 519
                  ++ +  I EL  I +                  F   +L         +   S
Sbjct: 460 KKAKDGLKNFLNTIKELRSIIEAGDIFFKKEEPKGEGLAPFIYEVLKQSGFAEYYESVDS 519

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
             G +    L+E  N     + +    L E +  +E              + V ++T+H 
Sbjct: 520 ASGTQKTANLNELANTASLYDFS-VKGLSEFLEHIEL--DRSLAESEEKKDSVNLITIHN 576

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            KGLE   V +    + VF   +                                     
Sbjct: 577 TKGLEFKNVIITGLETGVFPRDNGN----------------------------------- 601

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICK 666
                EE  RL+YV  TRA D L +  
Sbjct: 602 -FDELEEERRLMYVACTRAKDALYMTS 627


>gi|294625790|ref|ZP_06704408.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292599905|gb|EFF44024.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 658

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 106/723 (14%), Positives = 225/723 (31%), Gaps = 146/723 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +          I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRI-RGDGADGLTICTFHALGLK--FLQIEHAAAGLKRGFSIFDSDDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMHGAKPDAIEDAKNLISRAKNAGLSPEQAMAAARSTREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L   Y+        +DF+DLI     +L+  +    I     + I ++L+DE QD
Sbjct: 162 --AASLYERYQARLTTFNAVDFDDLIRLPVQILEANED---IVMGWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  IS +         G 
Sbjct: 310 IRVW--------------------------ECRDSEHEAEKVAAEISFL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    + L+    +           +   +KDL++  R 
Sbjct: 335 AKQVPWNDFCILFRGNFQSRPLEKALQLLR----VPYHLTGGTAFLERQEVKDLLSWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISK 480
           I++ +DD +F+  ++SP        + ++                    +Q       + 
Sbjct: 391 IVNPDDDAAFLRAVQSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + ++   +      +   L+           ++  +E         LDE    
Sbjct: 451 LSAFTDILRDMREHSSSMPAGELVRLLADKSGLLNDLRNQSKDETGFQRRKRNLDEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     +S  +L ++L       +       N+VR+MT+H +KGLE   VF+V   
Sbjct: 508 AEWFEGGPRGASASDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                      ++   +E  RLLYVG
Sbjct: 565 DGVLPHEVSL-----------------------------------EEGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA +QL +             +     ++D +       +    +       +     
Sbjct: 590 ITRAKEQLWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASAG 649

Query: 712 YEW 714
              
Sbjct: 650 LAA 652


>gi|57237983|ref|YP_179232.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni RM1221]
 gi|57166787|gb|AAW35566.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           RM1221]
 gi|315058542|gb|ADT72871.1| ATP-dependent DNA helicase UvrD/PcrA/Rep, epsilon proteobacterial
           type 2 [Campylobacter jejuni subsp. jejuni S3]
          Length = 691

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 194/539 (35%), Gaps = 92/539 (17%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKL---KKSQDEFIKIRDRFNTYKMF--KSTLASLTLA 130
                 K++I  +      D+ + +   K        + +  N  K    +        A
Sbjct: 114 DTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKEHNFEKYQNEYKFA 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ 
Sbjct: 174 N-YYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNT 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +     
Sbjct: 230 LQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN---- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 + +L  ++RS   IL   + + S  E   G +                      
Sbjct: 276 ----VKLAKLEQNYRSVGTILQAANNLISHNEQRLGKT---------------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++   +     ++     + L            IA  +  ++ +           
Sbjct: 310 --LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKLLNSG---------- 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++AK+I +L R    +  I           +IS          + L IKDL++  R IL+
Sbjct: 347 VEAKEIAILFRVNALSRAIEEAF----MKKQISYKLLSGMRFYERLEIKDLISYLRLILN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKF 481
             DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++ 
Sbjct: 403 PSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQNEA 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I+ IH L          D    +   K    +     G+E I  LDEF        +
Sbjct: 463 NIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIRNLDEFYANLREKLK 520

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL++L+SE+                 V +M++H +KGLE   VF++      F 
Sbjct: 521 EDPEASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFP 575


>gi|329895335|ref|ZP_08270960.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC3088]
 gi|328922348|gb|EGG29692.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC3088]
          Length = 664

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/606 (15%), Positives = 191/606 (31%), Gaps = 121/606 (19%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
               L       Y+ A +    LDF+DLI   N L ++      ++ +    + ++L+DE
Sbjct: 158 HLDILHSACYERYQRALRAYNSLDFDDLIFLPNILFREH---LDVKDRWQNRVRYMLVDE 214

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+  Q+E+IR L            +   L  VGD+ QSIY++ GA+P+ ++      
Sbjct: 215 YQDTNGSQYELIRHLMG----------TNSGLTVVGDDDQSIYAWRGAKPENLVALGEDF 264

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                       +I+L  ++RSTA IL   +++ +   +    +                
Sbjct: 265 PN--------LKVIKLEQNYRSTATILQCANELIANNPHIYDKA---------------- 300

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW ++      +     +        + +                       I  
Sbjct: 301 -----LWSELGRGDKVRIQAAADEHAEAEQVVAE-----------------------IID 332

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
           +  +R ++     +L R      L+    +     ++I    +          +KD++  
Sbjct: 333 HKMRRGLRYGAYAILYRGNHQARLLELELQ----RFQIPYQLSGGTSFFARNEVKDILCY 388

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCG 477
            R +++ +DD +F+ +   P        +  +         ++ +       I+  A   
Sbjct: 389 LRLLVNPDDDNAFLRICNVPKRKIGAVTLEAVGRFAHEHHISLKDAASRANQIEDLAAAA 448

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEF 532
            +      +++                  ++                      +  ++  
Sbjct: 449 QNALTEFAEWLAHWERECFEARDAKPIRAMIDDLNYEGHLQLTSSSDDVAARRMGNVEFL 508

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLV 591
           +    +  ++   +L+E I+ L       ++    +  + V++MT+H AKGLE P V+L+
Sbjct: 509 VASLDKVIEDQDLTLEEAIARLMLRDLMEQQEEERSGPDSVQLMTLHAAKGLEFPHVYLI 568

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  H                                      ++  T EE  RL 
Sbjct: 569 GFEENILPH-----------------------------------RNSIEADTVEEERRLA 593

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA + L I        +++                       +  +     E  A
Sbjct: 594 YVGITRARETLTISYAR----KRRQFGENMSCEPSRFVDELPTDLLERYDDEEQSAEVNA 649

Query: 712 YEWSTH 717
              S  
Sbjct: 650 ARGSET 655


>gi|331697795|ref|YP_004334034.1| exodeoxyribonuclease V subunit beta [Pseudonocardia dioxanivorans
            CB1190]
 gi|326952484|gb|AEA26181.1| exodeoxyribonuclease V, beta subunit [Pseudonocardia dioxanivorans
            CB1190]
          Length = 1137

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 125/1035 (12%), Positives = 284/1035 (27%), Gaps = 184/1035 (17%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L++              +    +  F  + I               +        A   +
Sbjct: 102  LRHLAAADAATVALRRERLRLAVAEFDAATIATTHQFCQRMLAGLGV-LGDADPDALFVE 160

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             +++    +   F  +K+             +     +  +   Q     +     +   
Sbjct: 161  SVDDLVEEVVDDFYVRKYAAAGAERPAFGRAEALQLARAVVGDPQARIEPVDADPGSPAA 220

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             + +      A+ +    +  K+   +  ++D++   +  L           ++      
Sbjct: 221  TRRS-----FAEAVRREVDRRKRAAKLYSYDDMLTRLDAALSDPVRGDAAAARLRSRYRV 275

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +L+DE QDT  +QW ++ +                TL  +GD KQ+IY+F GA+    L+
Sbjct: 276  VLVDEFQDTDPVQWRILSA----------AFHGHTTLVLIGDPKQAIYAFRGADVVSYLQ 325

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                                L  +FRS   +L  VD +F       G +      + H  
Sbjct: 326  AATD----------AGERFTLDRNFRSDRAVLDAVDALF------HGAALGDPRIVVHH- 368

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                + G         +    +    Q     +      +++   +A  +A  I+ ++ +
Sbjct: 369  VEAARPGRSLRGSTCDAPLRVRVVGTQRLGRLFHRLGRVDAARPQVAADVAAQIAALLAS 428

Query: 360  DT--IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                + ++G +R +   D+ VLVR      L+    R       +  V      +     
Sbjct: 429  GASVVPADGVERAVLPGDVAVLVRTNDQAELVLRTLRE----AGVPAVVTGTRSVFTTPV 484

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
              + + L   +      L       +     +  D+                     +  
Sbjct: 485  AGEWLTLLEALEQPHSGLRLRAAALTCFAGLTVTDL-------------------CGDDA 525

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV----IDVLDEFL 533
             +  + +   + +     +          +   ++  ++ ++R   +     +  + + L
Sbjct: 526  DAVVETLGDDLRDWAGALRGRGVAALLEAVSARRRLAERLLARTDGDRTLTDLRHIGQAL 585

Query: 534  NFTLRNEQNSYSSL-QELISELEQYP----PTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            +     E    S+L + L   +E+          R   ++ + V+I+TVH +KG E P+V
Sbjct: 586  HHAATQEHLGPSALVEWLRRRIEEAGSDTGAERSRRLESDADAVQIVTVHRSKGQEYPIV 645

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
             +       F+     +   +  L++ P     +           +           E  
Sbjct: 646  AVP------FAWDRNVQEPTLARLHEGPRQERVLDVGGPSGPHFLERQGAHLAEEAGEDL 699

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKS------------------------NQRTWYDM 684
            RLLYV +TRA  QL+      T+  K +                            +  +
Sbjct: 700  RLLYVALTRARSQLLTWWVPATTTSKSALHRMLAGGAGPGETPRETCAVPPDPGPVFDAL 759

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI--------KQLMDE 736
            V  +    +    + +    +         +   P       +  I           +  
Sbjct: 760  VRRAGTGPDGSPHVVVEQVGDDVPAPWSPPARPVPPLDAARFDRDIDLDWRRTSYSALTA 819

Query: 737  QKIPKKLFSPI----------KNDINEPYILNPSTIDTKGKTNLESLLSD-NQTFNRGLI 785
                    +P            ++  EP  L  +  D      + S ++D       G +
Sbjct: 820  AAHDAGAHTPAVVSEPEDPGIADEPAEPGPLLFTAADPAAAQAVPSPMADLPMGTAFGTL 879

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------MM 837
            +H +L+   T     R         + A+   A +   L  ++  ++  P         +
Sbjct: 880  VHAVLESADTTAADLRGELAARARAELARRPAAVDPDELAAALVPVVRTPMGPLVGGAAL 939

Query: 838  TTAMSCDSYSEVSVSGKINCPKKD------------------------------------ 861
                  D  SE+     +    +                                     
Sbjct: 940  ADVAPADRLSELDFELPLAGGDRPGPSPVLADVARLLRRHLPADDPLVGYPDHLDAPLLA 999

Query: 862  -----IIISGRIDQISISQQNIFIFEYKTHHHVPQEIE------------------HIPY 898
                   ++G ID +        + +YKT+   P   +                      
Sbjct: 1000 EQALRGYLTGSIDAVLRVGGRYVVVDYKTNWLGPAGPDGHVPLTSAHYGAAALTQAMTSA 1059

Query: 899  THIAQLSIYEKILKD 913
             +  Q  +Y   L  
Sbjct: 1060 HYPLQALLYGVALHR 1074


>gi|86152725|ref|ZP_01070930.1| ATP-dependent DNA helicase pcrA [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843610|gb|EAQ60820.1| ATP-dependent DNA helicase pcrA [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 691

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 195/539 (36%), Gaps = 92/539 (17%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKL---KKSQDEFIKIRDRFNTYKMF--KSTLASLTLA 130
                 K++I  +      D+ + +   K        + +  N  K    +        A
Sbjct: 114 DTKKIIKDLIHDKNKDNVYDIIKYISYCKNEGKRVSNVFEDLNLLKEHNFEKYQNEYKFA 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ 
Sbjct: 174 N-YYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNT 229

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++++L                +  VGD+ QSIYS+ GA+ + +L  +   +     
Sbjct: 230 LQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN---- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +++L  ++RS   IL   + + S  E   G +                      
Sbjct: 276 ----VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKT---------------------- 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++   +     ++     + L            IA  +  ++ +           
Sbjct: 310 --LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKLLNSG---------- 346

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++AK+I +L R    +  I           +IS          + L IKDL++  R IL+
Sbjct: 347 VEAKEIAILFRVNALSRAIEEAF----MKKQISYKLLSGMRFYERLEIKDLISYLRLILN 402

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA--------NCGISKF 481
             DDLSF  ++  P  +  E  +  +    +    ++++ + +              ++ 
Sbjct: 403 PSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGVGILTTKKAQNEA 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I+ IH L          D    +   K    +     G+E I  LDEF        +
Sbjct: 463 NIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIRNLDEFYANLREKLK 520

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL++L+SE+                 V +M++H +KGLE   VF++      F 
Sbjct: 521 EDPEASLEDLLSEISLLSNQDNLDEE----CVCLMSIHASKGLEFDYVFIIGFDEGFFP 575


>gi|329955053|ref|ZP_08296034.1| UvrD/REP helicase [Bacteroides clarus YIT 12056]
 gi|328526343|gb|EGF53358.1| UvrD/REP helicase [Bacteroides clarus YIT 12056]
          Length = 1128

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 123/856 (14%), Positives = 276/856 (32%), Gaps = 71/856 (8%)

Query: 100  LKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L +  +     + R  N+ ++    L  L L  +++       +++       L+ +TN 
Sbjct: 312  LLQDAERLRPQKSRTINSCRLSLQHLNKLQLLNHIDEEVRTLNREHNRF----LLSDTNA 367

Query: 159  LLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            LL        S+++  KI   I +++IDE QDTS +QW+  R L  +             
Sbjct: 368  LLHKLVHEGDSSFVFEKIGANIRNVMIDEFQDTSRMQWDNFRLLLLEGLS------QGAD 421

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLRE--KRINQKRATNAGQ-----KFSIIELPLSFRSTA 268
               VGD KQSIY +   +   +      +   +   N+ Q        +  L ++ RS  
Sbjct: 422  SLIVGDVKQSIYRWRNGDWGILNSLGSSQSQPQLYNNSSQLSFPFPVRVETLKVNRRSET 481

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            +++   +++F+   +                 +             V+Q   + + +   
Sbjct: 482  NVINFNNRLFTAAVDYLNSLHLEELKEECFPLKRAYA--------DVAQESPKTDSKGYV 533

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
              S+ +   + +        +   +  ++             ++  DI +LVRK K+ P 
Sbjct: 534  KVSFIEPDEERNYTEKTLSALGEEVQRLLSEG----------VKLNDITILVRKNKNIPP 583

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            I         +  + VV ++ F L   LAI  L+   R++ + E+ ++   ++ +     
Sbjct: 584  IADYF---DKELHLPVVSDEAFRLDASLAICMLIDALRYLSNPEEKIAKASLIMNYKLQI 640

Query: 449  SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK---YIHELIHIAQFCSPHDFFT 505
            +++   K          + E           +  +  +   + + L   A+   P +F +
Sbjct: 641  TDEKQVKADKAGANENKLRENGNIAGANEDKREANFAEPADWHNILTADARTALPAEFVS 700

Query: 506  LILG-AKKGRQQFISRF--------GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
             +         + +             +    L  F +      Q++ S L   I   ++
Sbjct: 701  RMNELRLMPLYELLEELFTLFNMGSIEKQDAYLFSFFDAVTEYLQSNSSDLDGFIRYWDE 760

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH--KHIKKMHIMPSLND 614
                 K   S   + +RI ++H +KGLE   V +     ++ +     +       S  +
Sbjct: 761  T-LCAKTIPSGEMDGIRIFSIHKSKGLEFHTVLIPFCDWKLENETYNQLVWCTAPESPYN 819

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
               +      S    ++        +     +   LLYV  TRA   LI+    +     
Sbjct: 820  AIDLVPVNYSSTMAESVYRQDYLDERLQLWVDNLNLLYVAFTRAGKNLILWSKKDQKGTM 879

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                      V  +       ++    +               + +N   ++     +++
Sbjct: 880  AELLSAALPQVAQTGEGSWNEEESVYESGEIYPSGEEILHCVQNEKNKDTDKPNDKSKVL 939

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
            ++              +        S         ++   S  +  NRG ++H L   I 
Sbjct: 940  NKLAQKPVKLPVHMESMRHDIEFRQSNRSADFIAGVDEAESSRRFINRGRLLHTLFSAIE 999

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
            T  E    + I+        +   +  + +     +    P +    S      +     
Sbjct: 1000 T--EVDIDDAISRLV-FEGIIGRTETEEEIRELTRKAFSQPQIKDWYSGAWQ--LFNECD 1054

Query: 855  INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            I   +   + + R D++ +    I + ++K               +  Q+  Y ++L   
Sbjct: 1055 IIWQENGELRNRRPDRVMMRDGVIVVVDFKFGKPN--------KKYNKQVQGYIELLVRM 1106

Query: 915  -YPNKSLVCLLIYVSE 929
             Y   ++   L YV E
Sbjct: 1107 GYDANTISGYLWYVEE 1122


>gi|166714219|ref|ZP_02245426.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 658

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/723 (14%), Positives = 223/723 (30%), Gaps = 146/723 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +          I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMGERVAKRI-RGDGADGLTICTFHALGLK--FLQIEHAAAGLKRGFSIFDSDDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMHGAKPDAIEDAKNLISRAKNAGLSPEQAMAAARSNREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L   Y+        +DF+DLI     +L+       I     + I ++L+DE QD
Sbjct: 162 --AASLYERYQARLTTFNAVDFDDLIRLPVQILEAN---KDIVMGWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LKIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  IS +         G 
Sbjct: 310 IRVW--------------------------ECRDSEHEAEKVAAEISFL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    + L+    +           +   +KDL++  R 
Sbjct: 335 AKQVPWSDFCILFRGNFQSRPLEKALQLLR----VPYHLTGGTAFLERQEVKDLLSWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISK 480
           I++ +DD +F+  ++SP        + ++                    +Q       + 
Sbjct: 391 IVNPDDDAAFLRAVQSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + ++   +      +    +           ++  +E         LDE    
Sbjct: 451 LSAFTDILRDMREHSASMPAGELVRTLAEKSGLLNDLRNQSKDETGFQRRKRNLDEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     +S  +L ++L       +       N+VR+MT+H +KGLE   VF+V   
Sbjct: 508 AEWFEGGPRGASASDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                      ++   +E  RLLYVG
Sbjct: 565 DGVLPHEVSL-----------------------------------EEGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA +QL +             +     ++D +       +    +       +     
Sbjct: 590 ITRAKEQLWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASAG 649

Query: 712 YEW 714
              
Sbjct: 650 LAA 652


>gi|325916135|ref|ZP_08178422.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC 35937]
 gi|325537679|gb|EGD09388.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC 35937]
          Length = 658

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/723 (14%), Positives = 225/723 (31%), Gaps = 146/723 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +          I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRI-RGDGADGLTICTFHALGLK--FLQIEHAAAGLKRGFSIFDSDDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMHGAKPDAIEDAKNLISRAKNAGLSPEQAMAAARSNREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L   Y+        +DF+DLI     +L+  +    I     + I ++L+DE QD
Sbjct: 162 --AASLYERYQARLTTFNAVDFDDLIRLPVQILEANEE---IVMGWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLQQMGRDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  IS +         G 
Sbjct: 310 IRVW--------------------------ECRDSEHEAEKVAAEISFL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    + L+    +           +   +KD+++  R 
Sbjct: 335 AKQVPWSDFCILFRGNFQSRPLEKAMQLLR----VPYHLTGGTAFLERQEVKDVLSWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISK 480
           I++ EDD +F+  ++SP        + ++                    +Q       + 
Sbjct: 391 IVNPEDDAAFLRAVQSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + ++   +      +   ++           ++  +E         LDE    
Sbjct: 451 LSAFTDILRDMREHSASMPAGELVRMLADKSGLLNDLRNQSKDETGFQRRKRNLDEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     +S  +L ++L       +       N+VR+MT+H +KGLE   VF+V   
Sbjct: 508 AEWFEGGPRGASASDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                      ++   +E  RLLYVG
Sbjct: 565 DGVLPHEVSL-----------------------------------EEGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA +QL +             +     ++D +       +    +       +     
Sbjct: 590 ITRAKEQLWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASAG 649

Query: 712 YEW 714
              
Sbjct: 650 LAA 652


>gi|313680462|ref|YP_004058201.1| uvrd/rep helicase [Oceanithermus profundus DSM 14977]
 gi|313153177|gb|ADR37028.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
          Length = 917

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 133/953 (13%), Positives = 264/953 (27%), Gaps = 95/953 (9%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
                 L E    I    +     +       V  +       +     T+         
Sbjct: 43  AELKARLRERLLAIAAGRFQPSGAEDVPPEAVVRRAGALATEVLGATVTTIHGFFAELLR 102

Query: 63  EERFSL-LSSFFLTQKFTPQKNIITQEINKK--SPDLKEKLKKSQDEFIKIRDRFNTYKM 119
           +   +L L   FL    +  + I  +E        +  + L +        R      + 
Sbjct: 103 QNALALGLEPDFLRIDASESQQIFAEEARAYVYLNEEDDALAEVLGRLFAKRSLAAELRP 162

Query: 120 F-KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++  A     + +   Y         L   D+ ++   LL++      +  +I   + 
Sbjct: 163 QGEAAEALWAHFRAVLERYARRLGGE-ALGPADIELHAWRLLERAGREEALAARIRSRLA 221

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + +DE QDTS +Q  V  +L           +    +  VGD KQSIY+F  A+ +   
Sbjct: 222 RVFVDEYQDTSPLQGRVFAAL----------EALGVEVEVVGDPKQSIYAFRNADVEVFR 271

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              R  +              L  S+R    ++  +++        +  +          
Sbjct: 272 EAMRRGEPLPP----------LVTSWRHDRALVRFLNRYVDWVAEERPEAFARAEAPPVE 321

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           +      G V+L             P                     A ++A  +     
Sbjct: 322 ARPDAGPGRVRLQLVQGEARQDALRP-------------------YEADQLARWLQERHA 362

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                          +D+ VLVR     PL+          + +  V        D + +
Sbjct: 363 EHA-----------WRDMAVLVRSHSSVPLLVRALAA----HGLPHVVVGGRGFYDLIEV 407

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           +DL+   R  L      S    L+ P        + ++         +            
Sbjct: 408 RDLVHAARVALDPRGRFSLAAFLRGPFAGLDLGRVERVLAAEDPLAELERA--------- 458

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTL 537
                V + +  L+   Q   P DFF  ++         ++ R        +D+ L    
Sbjct: 459 --APEVAERVDRLVRWVQTLRPLDFFERMVRTPFLEGASYLERLEPPARANVDQLLFKLA 516

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                    L   + +L               + VRI T+H +KGLE PVV + D     
Sbjct: 517 SRRYGRLEFLLRDLEDLRGSDEAGV--PEGGFDAVRIYTMHGSKGLEWPVVAVFDLNRGQ 574

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   +          G           +          K+  ++E  RLLYV ++R
Sbjct: 575 PDGAEPFYVRPGSGEFAAEG-----------DPDYPRFAAEWKERERQEAYRLLYVALSR 623

Query: 658 ASDQLIICKHS--NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
              +L++          E    +     +               L         +    +
Sbjct: 624 PRSRLLLSLSVQLKPDGEGLRPKFWRRTLGRTLIEEMNLAAWDALEVERLDAARLPAPKA 683

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                    + +E ++  ++    P                      D   +     +  
Sbjct: 684 AAAAPRRAADVDERLRAPVEPLARPPVYSPSALKAERPAPPELDDEGDVAVELEEPGVDP 743

Query: 776 DNQTFNRGLIIHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
                  G+++H  +         +           T+  +     E    L +  RLL 
Sbjct: 744 GLVARTVGILVHYAIGQDWGPERLQDLWNQEAVQRLTEPERTRVKTEVAQRLETYWRLLG 803

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
             +       + Y+E  +       + D +  G ID++        + +YKT        
Sbjct: 804 TELPALDERDEDYAEFPLLLPTRTARLDTVWEGVIDRLYRVGDVWVLEDYKTDR------ 857

Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
           E  P  +  QL++Y + +  ++  +     L+Y+   +V  +    L +AF  
Sbjct: 858 ELHPERYHFQLALYRRAVAAAWGIEP-EARLVYLRFGEVVPLEAQLLEEAFER 909


>gi|119776398|ref|YP_929138.1| ATP-dependent DNA helicase Rep [Shewanella amazonensis SB2B]
 gi|119768898|gb|ABM01469.1| ATP-dependent DNA helicase Rep [Shewanella amazonensis SB2B]
          Length = 670

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 106/652 (16%), Positives = 214/652 (32%), Gaps = 122/652 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 K +  +E+ +    LK       +    +    +  K+ K       L   L  
Sbjct: 112 DTLALLKELTEKELQEDKDLLKLLATSISNWKGALVIPDHARKIAKDERE--QLFALLYQ 169

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  K    LDF+DLI+    LL+  +    +R +    I ++L+DE QDT+  Q+E+
Sbjct: 170 RYAQHMKAYNALDFDDLILLPTLLLRHNEE---VRRRWQTRIQYLLVDEYQDTNGSQYEL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +                VGD+ QSIYS+ GA+P+ ++   +             
Sbjct: 227 VKLLVGE----------RARFTVVGDDDQSIYSWRGAKPQNLVLLGKDFP--------SL 268

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RS+  IL   + + +   +    S  S           G+   V       
Sbjct: 269 KLIKLEQNYRSSQRILRAANILIANNPHVYDKSLFSE-------LAYGEPMRV------- 314

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                                    +    A R+   I           +         D
Sbjct: 315 ---------------------ITALNEEQEAERVVAEIIR---------HRFVGKTSYGD 344

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           +I    +          IKD+MA  R +++ +DD 
Sbjct: 345 YAILYRGNHQSRLIERAL----MTNRIPYKLSGGTSFFARSEIKDIMAYLRLVVNPDDDN 400

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYI 488
           +F+ ++  P        + ++      +  +++  I +        N  +S  +   ++I
Sbjct: 401 AFLRIVNLPKRGIGPATLERLGNFANSKHISMFAAIFEPELELHLGNSALSALEQFGRFI 460

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFTLRN---- 539
            E   IA+     D    ++               ++     +  + E   +        
Sbjct: 461 VETGDIAERGEGVDAIKQLIRNINYEDFLYETSPSAKAAEMRMKNISELYRWVTEMLNGD 520

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + +   +L E++  L       + +     ++V++MT+H +KGLE P VF++    ++  
Sbjct: 521 DLDEPMTLPEVVGRLTLRDMMERNSEDEAGDQVQLMTLHASKGLEFPYVFMIGMEERILP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   EE  RL YVG+TRA 
Sbjct: 581 HQTSID-----------------------------------EDNVEEERRLAYVGVTRAQ 605

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            +L            ++ +      + +   +D   +  K   +  + +   
Sbjct: 606 RELWFTLCRERRQFGETMRCEPSRFLDELPQDDLIWESRKQPQTEQQRQETG 657


>gi|265763690|ref|ZP_06092258.1| ATP-dependent helicase [Bacteroides sp. 2_1_16]
 gi|263256298|gb|EEZ27644.1| ATP-dependent helicase [Bacteroides sp. 2_1_16]
          Length = 1057

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 114/813 (14%), Positives = 253/813 (31%), Gaps = 99/813 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    +  ++N       L+ +TN LL +      S+++  KI   I +++ID
Sbjct: 337  VRLLTNIDEEVRQLNRENNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIRNVMID 392

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  + L  +                VGD KQSIY +   +   +    + 
Sbjct: 393  EFQDTSRMQWDNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLNKQ 446

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                            L  + RS  +I+   + +FS   +      +             
Sbjct: 447  LGYF------SIRTETLKTNRRSETNIIRFNNSIFSAAVDYLNEMYNKQLGSICEPLINA 500

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   Q      + +   +          +   + +++ +    
Sbjct: 501  YA--------DVEQESPRNKQQGYVKVEFLEPDEEHDYTEQTLISLGMEVEHLLQSG--- 549

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   ++  DI +LVRK K  P I              +V ++ F L   LAI  ++ 
Sbjct: 550  -------VKLNDIAILVRKNKSIPRIADYF---DKQLNYKIVSDEAFRLDASLAICMMLD 599

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
              R++   E+ +    +        +   +  + ++      +    ++           
Sbjct: 600  ALRYLSDPENRIVKAQLA-------TNYQLQILHSEYDLNSLLLHKAEELFPP------A 646

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             ++ + EL         ++    +    +  +        +    L  F +      Q+ 
Sbjct: 647  FLERMAELR----LMPLYELLEELFSLFELHR------IEQQDAYLFAFFDAVTDYLQSH 696

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S     I    +   + K   S     +RI ++H +KGLE   V L     ++ +  + 
Sbjct: 697  SSDPDSFIRYWNET-LSGKTIPSGEVEGIRIFSIHKSKGLEFHTVLLPFCDWKLENETNN 755

Query: 604  KKMHIMPSL--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            + +  +P     ++  I      S    ++      H +     +   LLYV  TRA   
Sbjct: 756  QLVWCVPQEAPFNELDIVPVNYSSAMAESVYRTDYLHERLQLWVDNLNLLYVAFTRAGKN 815

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            LII    +   ++ +        +  + +  ++    +    +        E        
Sbjct: 816  LII---WSRKGQRNTMAELLTGALPQAANKLDQEWDEEQVYELGDLCPSENEKKIDSGNK 872

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
               + E+    +       +                  S         L    SD++  N
Sbjct: 873  LTRKPEKLPVNMESMHPDIE---------------FRQSNRSADFIKGLSEEESDDRFIN 917

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
             G ++H L   I    +   +  I         +   +  + +     +    P +    
Sbjct: 918  HGQLLHTLFSAIE--TKDDIEPAIQRLI-FEGIIGSKEAEEQIRSLTVKAFSLPEVQEWY 974

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
            S +    +     I    K ++ + R D++ +  + + + ++K               + 
Sbjct: 975  SGEWR--LFNECAIIYKDKGVLQTRRPDRVMMKNEQVVVVDFKFGKAN--------KKYN 1024

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
             Q+  Y ++L      K++   L YV E ++  
Sbjct: 1025 KQVKGYMQLLSRM-GYKNITGYLWYVEE-EIIE 1055


>gi|189913135|ref|YP_001965023.1| Exodeoxyribonuclease V, beta subunit [Leptospira biflexa serovar
            Patoc strain 'Patoc 1 (Ames)']
 gi|189913470|ref|YP_001964698.1| Exodeoxyribonuclease V beta chain, UvrD subfamily [Leptospira biflexa
            serovar Patoc strain 'Patoc 1 (Paris)']
 gi|167777811|gb|ABZ96110.1| Exodeoxyribonuclease V, beta subunit [Leptospira biflexa serovar
            Patoc strain 'Patoc 1 (Ames)']
 gi|167781538|gb|ABZ99834.1| Exodeoxyribonuclease V beta chain, UvrD subfamily [Leptospira biflexa
            serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 1209

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 133/829 (16%), Positives = 268/829 (32%), Gaps = 101/829 (12%)

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
             L ++ +I+   D++ +      I+  + +     ++DE QDT   Q+++ ++L  D   
Sbjct: 344  YLTYDQMILKVYDVIVRNPNQILIQS-LRERFQVCILDEFQDTDKNQYQIFKTLFLD--- 399

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                 +  R LF +GD KQSIY F GA+    L   R  +          S   L  ++R
Sbjct: 400  ---KDTKSRMLFCIGDPKQSIYGFRGADIGIYLEASRDFE---------GSKSTLETNYR 447

Query: 266  STADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            ST +++  ++ +F       G +           + + + +  +    + +  ++ +   
Sbjct: 448  STKELIHGLNTIFHDETKEWGETHFFPIEEPGSSKENYLYKKVSSPDIDTIKYKYVNPEE 507

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-----SNGKKRVIQAKDILV 378
                 +           S +I A  I   I  +   +T          + + I+ KDI +
Sbjct: 508  SAIHIFDFEERFPNVNKSRNIWAETIRNEIKRIQNKETSLLYNKKGEREIQEIKLKDIAI 567

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            L   +K+T L+ F          I      +  +        +  L   + S     S+ 
Sbjct: 568  LCGNKKETELVEFYL----TKAGIPCSIYKQRGIYQSREADQIENLLECLQSSNSSQSYK 623

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
             +L S +F     +I K      ++       +       +++    + + +   +    
Sbjct: 624  KILFSDIFCIHPHEIQKFDEHSIDSYEKSLIDKWQRLIKENRYASFFRSVMDETKLFWLE 683

Query: 499  SPHDFFTLILGAKKGRQQFISRFGNEVIDV--LDEFLNFTLRNEQNSYSSLQELISELEQ 556
              H            RQ F      ++     L E L           +SL+EL  + + 
Sbjct: 684  GNHTL-EWERKRTNFRQIFQKLLEVQLKSNCGLLELL-----------ASLRELKQKKQS 731

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                         + V+I+T+H +KGLE PVVFL                + +     + 
Sbjct: 732  PEEEPLFDRETEEDSVQILTIHASKGLEWPVVFL--FYFGNRGTNLTNTEYPIEIETPEG 789

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKK 675
                WI      N       +  +     E  RLLYV +TR + +L +   +   S ++ 
Sbjct: 790  KKRKWILDLWDLNPE----KEDEENHFLNEQKRLLYVALTRPNLRLYLPKLNWGRSKKED 845

Query: 676  SNQRTWYDMVYDSF-------HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
            S   + Y  +            N     +         +   +   +      T  ++  
Sbjct: 846  SLPNSGYSQILYQELIRIQTLQNQNPFLESSFVFRNPNEFSESQTINLQTSSVTQTKKPS 905

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINE-PYILNPSTIDTK------GKTNLESLLSDNQTFN 781
                   E KI + L       +      LN S  + K          + +      +  
Sbjct: 906  FPILYPSEIKIGRVLLQHSYTSLQANEKNLNVSQEEKKKELEETPDVEVSTTFELPSSAK 965

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFIT-----SYCTKNAKLWPAKEYK----NLLLSITRLL 832
             G  +HK+L++          + I       +  + + L    E +     +  ++  LL
Sbjct: 966  VGNFLHKILELCDFSTFQLEVDAILESPSWKWAYQKSFLRYPLEIEGKDAKIEHTVATLL 1025

Query: 833  ENPMMTTA-------MSCDSYSEVSVSGKINC----------------PKKDIIISGRID 869
            ++ M            S     E   S ++                     +  + G ID
Sbjct: 1026 KHAMTAKIKLATGNSFSLSELKEEEKSAELKFHLFLQNLLKESGASLTDGFEHYLKGAID 1085

Query: 870  QISISQQNIFIFEYKTHHHVPQE--IEHIPYT-----HIAQLSIYEKIL 911
             + +  Q  +I +YK++     +   E +        ++ Q S+Y  IL
Sbjct: 1086 LVFVKDQKFYIVDYKSNLLPNNDYSSEAVANAVRDKGYLFQKSVYSFIL 1134


>gi|260904113|ref|ZP_05912435.1| UvrD/REP helicase [Brevibacterium linens BL2]
          Length = 1061

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 119/946 (12%), Positives = 254/946 (26%), Gaps = 188/946 (19%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            ++ + L +     +  + +       ++ L +      L   Y  AK++N  +DF D + 
Sbjct: 191  EVTDYLDQCLQALVSSKGKPVDPSGRRAKLEAKIKTAKLADEYMAAKRRNLAMDFSDQVR 250

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
                +L +   +   R         +L+DE QDTS+ Q +++R L               
Sbjct: 251  FAQRILDEVPAA---RRAEQHRWKIVLLDEFQDTSVAQLKLLRDLFH-----------ST 296

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             + AVGD +Q+IY + GA    ++R                  + L  S+R+   ILTV 
Sbjct: 297  AVTAVGDPRQAIYGWRGASADNMIRFSSDFH--------DVESLTLSTSWRNDHRILTVA 348

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            +                +      +      G V +     +           S T +  
Sbjct: 349  N--------RTANGLAGSRETPLSARTGAGEGDVAIDISSGAHDPDFLTVGLRSLTEWVA 400

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            SLP  SS                                    VL RKR     +     
Sbjct: 401  SLPDGSST----------------------------------AVLCRKRAHFAPVAAALE 426

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                    +V  +    L     + DL A+    +      S + ++   L      DI 
Sbjct: 427  T----AGYAVHVHGSSGLLSDPFVADLRAVLTAAVDPMAGDSLMRLISGRLLGLGATDIA 482

Query: 455  KIC-----------------------------------TQRHETETVYEYIQKFANCGIS 479
             +                                        E   ++E +   A    +
Sbjct: 483  ALQSFTRRQNDSRVTEFLGEDPENSGVVPENIDQATIVEGLDELVDLFEALSGSAKFPGA 542

Query: 480  K---------------FQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQ---FISR 520
            +                + +++    L H  +   +        +               
Sbjct: 543  RAMVSNFRNSGLSELALKRLVRLAQALRHVRSGSGTIASIIRTAMTETGVDTDIWGLSDS 602

Query: 521  FGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTI---KRAHSANHNEVRIMT 576
              N     +D FL+   +    +   S+   +  L              ++    + IMT
Sbjct: 603  LRNLHRSAIDSFLSAASQYSAADDQPSVPGFLEWLSLMEEKDALSVAEPNSAAEAIDIMT 662

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS--------------LNDDPGIPIWI 622
            VH +KGLE   V +     + F          M                ++ D     + 
Sbjct: 663  VHASKGLEFDAVAVPSLVVKDFPTSPRDPEGWMERTALPYPLRGDRAHLVDYDLRTADFD 722

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             +      +   +   +  + +EE  RL YV  TRA   L +      +         + 
Sbjct: 723  TKKALDEWVNEFIKPAIADAHEEEERRLAYVAFTRAKHHLWLGAELMGARANPDEPSPFL 782

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD------- 735
                +  + D  + +    ++ ++ E   +        +T     E + +          
Sbjct: 783  MEAIEELNLDVDMPEPADESAEDRVETSVWPVPRTALVSTARRAAEWVSRAAPTGLSELA 842

Query: 736  -EQKIPKKLFSPIKNDINEPY---------ILNPSTIDTKGKTN--------LESLLSDN 777
             +     +         + P           L+ + + +  +                 +
Sbjct: 843  QKPTPVGQYARQALRISSRPEREGTGAVPDRLSATALVSWRRDPNDFMKQTLRPVPSPPS 902

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
            +    G   H  ++  F       ++       +  +       + L  +          
Sbjct: 903  RAAEIGTTFHSWVEQHFGQASIDIED------EQQVRPIDTATIERLQQTFIG----SEF 952

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
             +  +        +            + G+ID + I+  +  + ++KT        E   
Sbjct: 953  ASRHADH------IEMSFELVLGRFRVPGKIDAVFITGDHAEVVDWKTSKLP---EEKTL 1003

Query: 898  YTHIAQLSIYEKILKDSYPNK-SLVCLLIYVSEPKVFI---IPQNK 939
                 QL++Y   ++  +P    +     +V    +     +P+  
Sbjct: 1004 EVMKWQLALYRFAIQRVHPEITEVTGTFYFVGSDDIVRFTHLPEET 1049


>gi|253568133|ref|ZP_04845544.1| ATP-dependent helicase [Bacteroides sp. 1_1_6]
 gi|251842206|gb|EES70286.1| ATP-dependent helicase [Bacteroides sp. 1_1_6]
          Length = 1057

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 120/866 (13%), Positives = 257/866 (29%), Gaps = 106/866 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            K+  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KHWATKTSPRFADIIDLAKSSLMQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +    N       L+ +TN LL +      S+++  KI   I +++IDE QDTS +
Sbjct: 345  EEVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIRNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +       +      
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLNDRIEHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +I+   +++F+   N                 +      V   
Sbjct: 451  --PIKVKTLATNRRSETNIIRFNNQIFTAAVNYLNEVYKKQLGKDCDDLQKAYADVV--- 505

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                 Q   +   +     ++ +              +   + +++ +           +
Sbjct: 506  -----QESPRSVQKGYVKATFLEPDEAHDYTDQTLISLGEEVEHLLSSG----------V 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  DI +LVRK K  P I         +    +V ++ F L   LAI  ++   RF+  +
Sbjct: 551  RLNDIAILVRKNKSIPRIADYF---DKELHYKIVSDEAFRLDASLAICMMIDALRFLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  ++   EL
Sbjct: 608  SNKIA-------------RAQLAIAYQNEVLQKNLDWNTLLLLPIENYLPPAFLEKQKEL 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      E    L  F +      Q++ S L   I
Sbjct: 655  R----LMPLYELLEELFSI------FEMSHIEEQDAYLFAFFDAVTDYLQSNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               ++   +           +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RYWDETLCSKTIPSGEVEG-IRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQ 763

Query: 612  L--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +   I      ++   +I  +     +     +   LLYV  TRA   LII     
Sbjct: 764  EAPFNAMDILPINYSTQMAESIYGNDYLLERLQLWVDNLNLLYVAFTRAGKNLIIWSKKG 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      D      +       +                   EE 
Sbjct: 824  QKGTMSELLANTLPVVALKEGLDWEEDCYEQGELCPSE-------------------EEK 864

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
             K   ++              +        S         +E   SD++  +RG ++H L
Sbjct: 865  AKTSTNKLTQKPDKLPVHMESMRHEIEFRQSNRSADFIQGIEEEESDDRFIHRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
               I T         I         +  +++ + +     +   +P +    S   ++ +
Sbjct: 925  FSAIET--AEDIDPAIERLI-FEGVIASSEKAEEIREVARKAFSSPEIQDWYS-GEWT-L 979

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                 I   +K ++ + R D++ +    + + ++K      Q        +  Q+  Y +
Sbjct: 980  FNECAIIYKEKGVLQTRRPDRVMMKDGQVVVVDFKFGKENLQ--------YNKQVKGYMQ 1031

Query: 910  ILKDSYPNKSLVCLLIYVSEPKVFII 935
            +L      K++   L YV E  +  +
Sbjct: 1032 LLTKM-GYKNITGYLWYVDEELIVKV 1056


>gi|154174808|ref|YP_001407581.1| putative recombination protein RecB [Campylobacter curvus 525.92]
 gi|112803782|gb|EAU01126.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter curvus
           525.92]
          Length = 933

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 145/921 (15%), Positives = 274/921 (29%), Gaps = 170/921 (18%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ-ASQTQCIEERFSLL 69
           E+ E  Y++   +   + +      ++    GN      +    Q A           + 
Sbjct: 167 ETLERFYENFDSVKADKDAKFPNDEAVRTALGNLLDYAVSNGGSQTAQNAFLPGSPAQIA 226

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
              FL  +    +          +P L E   K ++       +F  YK+ +        
Sbjct: 227 QRGFLEHESLEYRTFSKI----YTPKLDELFGKLKEALRSYFRQFEEYKLNELN------ 276

Query: 130 AKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                A Y+EAK    K+   L F D+     +LL K      + +++D  INH+LIDE 
Sbjct: 277 --RFLALYKEAKLELDKEQNSLSFSDINKLAYELLTKNIDKQMLYFRLDGRINHLLIDEF 334

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT++ Q+E+I  L  +   G   +    + F VGD KQSIY F G + +   + K    
Sbjct: 335 QDTNVTQYEIILPLVAEIVSGYGQNGLG-SFFYVGDTKQSIYRFRGGKKELFDKLKAQFT 393

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           + A++         L  ++RS   ++   + VF                +     +  + 
Sbjct: 394 QIASD--------GLDTNYRSLKGLVKFTNTVFK------------DKILNFTEQKASKK 433

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              +L   V  + +   +   +       S     S +         + N I        
Sbjct: 434 DDERLNFTVSQECEYFESEADDHGFLKVVSSEDIVSGA------ISEVKNFIQNG----- 482

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                ++  DI +L  K +D   +            I+ V      L      + L+   
Sbjct: 483 -----VEPSDITLLCWKNEDINKLANALSE----QGINSVSEGSLGLLASPYARALVEYA 533

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           +F                 LF    D I+K  TQ            +  +       ++ 
Sbjct: 534 KFC----------------LFG---DKIYKFNTQAIVKANAPRLEIRAESTAFESLHYLA 574

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             +      +      +  +                     + L +F+      E  +  
Sbjct: 575 MRLGVDTSNSDVLRLFELTSE-------------------YENLADFIFKLDSFEGLAMP 615

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
                                 +   VRIMTVH +KGLE   V +               
Sbjct: 616 ---------------------KSSQGVRIMTVHKSKGLEFSHVIV--CDKMGADRADTSS 652

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                 + +   I   I   ++ +     L     +  +EE    +YV  TRA+  L++ 
Sbjct: 653 FLAEYDVKNGWQIMHKIKGKENFDEDFRVLKNRANELEKEEDMNKIYVAFTRATRSLVVV 712

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
           K++       S    +     +     +                 + E S   P+   + 
Sbjct: 713 KNAGPGGRSPSFFGAYEKKTGERVEYLDLKDFTFGKILAGAPTQTSKENSEILPQILQIS 772

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           R+E                                          +   ++ +    GL 
Sbjct: 773 RQEAQS-------------------------------------PDKQEGANLRAIYIGLA 795

Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
            H LL++     E        S   K  K   A +  ++      L+ +           
Sbjct: 796 FHYLLEMAAKFDETGLIAARNSMQNKFHKFLCADDLDDVFKRGLMLVNDAKFREFTDAK- 854

Query: 846 YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
             E+     +           +ID + + +  I + +YK+     + I+        Q+S
Sbjct: 855 --EIYKEQPLKFQGALR----QIDLLCVGESEICVIDYKSS---DKNIDENV----LQVS 901

Query: 906 IYEKILKDSYPNKSLVCLLIY 926
            Y+K + + YPN S+  ++ Y
Sbjct: 902 EYKKAIAEFYPNSSVRAVIFY 922


>gi|269977489|ref|ZP_06184461.1| UvrD/REP helicase [Mobiluncus mulieris 28-1]
 gi|269934405|gb|EEZ90967.1| UvrD/REP helicase [Mobiluncus mulieris 28-1]
          Length = 1213

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 148/986 (15%), Positives = 290/986 (29%), Gaps = 161/986 (16%)

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
            +++         +  LL+S  L +   P K              ++ L         +  
Sbjct: 239  MKKLYADFLATAQRELLASQKLDEALEPLKAAKKAAKAANDKQREKALGVEITNL-DLPL 297

Query: 113  RFNTYKMFKSTLASLTL---AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                 K  + T+  +     A  +   +   K +    DF D      +LLKK    A I
Sbjct: 298  TSQAKKDLERTVEVMRFGVDAVEVIRAFNTRKAQLRFADFSDQTREVVELLKK---VANI 354

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                 Q    +L+DE QDTS+ Q + + +L                + AVGD  Q+IY++
Sbjct: 355  SQSYQQRYQLVLLDEFQDTSVAQLKYLSALF-----------RNHAVTAVGDPNQAIYAW 403

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD----KVFSIPENAQ 285
             GA    +        K  ++   K + + L  S+R+ A IL V +    ++        
Sbjct: 404  RGASAASI----EEFPKYFSDNPSKVASLTLRTSWRNDAAILNVANCIASEIAEQNRTEG 459

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ-QESWTSYFDSLPQESSASI 344
                     +  R      +G V     +    ++Q      E+W    +   ++++A  
Sbjct: 460  KNENFIMPDLSLRPGASPDLGRVYGAPFLTDTDEAQAVANFLENWRKDLEQAVEKTAAWQ 519

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A R+                            VL RK+    ++  + R L +   I  
Sbjct: 520  AAGRVGQ------------------PPSLPTAAVLCRKKS---IMLPILREL-SRRGIPF 557

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                R        +  + A    +++ ++  S + +L    F  S +D+  I      T 
Sbjct: 558  QLQARESALLDPGVVLVRAALNVVVNPQNSGSLLLLLN--RFRLSREDLEAISKAAGRTG 615

Query: 465  TVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
              ++ + K       +  G  +   + + I +L     + +P     L         +  
Sbjct: 616  LPFQEVMKSQIGASVSQPGRERLAILREIIAKLEKHVSYATPLQMAKLAAKLLGLDIEQR 675

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI----KRAHSANHNEVRI 574
                    +    FL+     E++  ++L+  +  L+          +   + +  +V++
Sbjct: 676  IPGTPYQEEAFTIFLSIIEDFERSGQATLRAFLEWLDVAESEEKEVGQFQEAVDTKKVQV 735

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDDPGIPIWIPQSKSR 628
            +TVH AKGLE   V +       F     +           P   D   +P +    +  
Sbjct: 736  ITVHAAKGLEWDYVAVPGLSEGNFPDNRTEIWLKNYFVLPYPLRGDRDSLPQYEINLRQL 795

Query: 629  NNIVSDLIKHLK------KSTQEEYNRLLYVGMTRASDQLIICKHSNTS----------- 671
                       +          +E   L YV  TRA   L +                  
Sbjct: 796  GEKDRSRKFLEQYDGVRTLHHLKEEANLAYVAFTRAKSHLFLSMSWFKGCNVNTAKPGAF 855

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHND------ERVKKIKLTNSINKDE 708
                             N+  +   +   M    +  D      E  +            
Sbjct: 856  FRVLLGEDAKLFCMEKPNKGMTLVNSQEFMHLPDWLGDINPCFTEPEEANPNVQEFEAGL 915

Query: 709  WIAYEWSTHHPE---------------------------NTPLEREETIKQLMDEQKIPK 741
            W A  W    PE                               +  E+        ++ K
Sbjct: 916  WQAPSWLDLPPESIRPETFPWDVAGLQRSYQMVTVAAENPPDSQALESAIPGSLSWRVWK 975

Query: 742  KLFSPIKN----------DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
               +P                    L+ S+ D   +      L  +     G+I+H  + 
Sbjct: 976  LYNAPRPRLDSSTLLRQIAATSVVKLDESSDDFMLQKLRPLPLPPSPAARLGIIMHAWIA 1035

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851
                 P     +   +    +++L      +       + L+   +          E S 
Sbjct: 1036 QQLGQPTLDIPDGSEATLDADSRLKLDCYRQTWEN--LQFLKGKAVMDI-------EHSG 1086

Query: 852  SGKINCPKKDIIISGRIDQISISQ--QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
            S  +    +   +  RID +   +     +I ++KT  H P   E+    ++ QL IY  
Sbjct: 1087 SLVVGEGTEGFEVPLRIDAVFQERSCGTTWIVDWKTASH-PNPPEY--ERYLHQLGIYRL 1143

Query: 910  ILKDSYPNK---SLVCLLIYVSEPKV 932
                ++P      + C  +Y+ E + 
Sbjct: 1144 YWLQTHPELDSQDIQCAYVYLKEGET 1169


>gi|288800136|ref|ZP_06405595.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon
            299 str. F0039]
 gi|288333384|gb|EFC71863.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon
            299 str. F0039]
          Length = 1076

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 133/871 (15%), Positives = 282/871 (32%), Gaps = 86/871 (9%)

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            S  ++++    +K  +   + ++   L   ++  +   + +     +  +    L  L L
Sbjct: 286  SDAWISKGGEEKKPYLRSLVEQRFMPLLNGVESMR---VPLTKTILSVTLTLQHLNKLRL 342

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQ 186
               +     E   +N       L+ +T  LL    +   S ++  KI   + HI+IDE Q
Sbjct: 343  LSNIEKKVHEINNENNQF----LLSDTQILLNSMIEESDSPFLFEKIGTRLEHIMIDEFQ 398

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DTS  QW+  + L  +      + +       VGD KQSIY +   + K +    +    
Sbjct: 399  DTSTTQWKNFKILLNECLSHAESSN-----LIVGDVKQSIYRWRNGDWKLLNNIDQEF-- 451

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               ++ +   I  L  ++RS+ +I+T  +  F      +       +    +  +     
Sbjct: 452  --NHSEEVLDIKNLTTNYRSSRNIITFNNAFFYSLVKTEAGILHEISEKEEQQLQSAYDD 509

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              QL  +                    + L +E        +    I +++         
Sbjct: 510  VAQLVPKNKPNK----------GYVQIEFLKKEVYEEETLPQTKAIIQDLLDKG------ 553

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                 Q KDI ++ RK      I               V ++ F +    A+  ++   +
Sbjct: 554  ----AQPKDIAIIHRKNDKLQEIANYLMNEMPHLH--FVSSEAFKIHSSSAVNIIIKALK 607

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            F+++ +D L+   ++++               Q  + +++    +      + K      
Sbjct: 608  FLVNNDDKLALAELVQTY---------QTEVLQTKDIDSLMVENRDSLENLLPK--SFYI 656

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
             I EL  +A      +    I  A             E    +  F +       ++ S+
Sbjct: 657  NIDELRELA----LLNLIETIFNAFSL------DTLKEQTSYVCTFYDKVNEFITDNGSN 706

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            L   +++ E          +   + + ++T+H  KGLE   V +     ++     +   
Sbjct: 707  LPLFLNQWE-DDLYNTTISTEQLDGITLITIHRCKGLEYKHVIMPFCDWKLKQDATMLFK 765

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                  +  P +PI+  +SK  N I           T  +   +LYV  TRA D L +  
Sbjct: 766  TPEAPFSLIPILPIYNSRSKMMNTIFESQYIEEYSQTIVDNLNMLYVAFTRACDSLFVIS 825

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             +N S             +  +  N +              E   +++     E   +++
Sbjct: 826  CANQS------ILYRASSIQAAMINIKDQLPNCTIIDELDKEDCYFKFEYGKLEVEAVQK 879

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
            E+     + +  I          +  E      S    +     E+     Q    G ++
Sbjct: 880  EDEKSMNIFKTPIIP--HQIDIKNYAEKASFLQSNKSNEYLKGEETKSKQQQYIELGQVL 937

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-- 844
            HK+   I    +      I     +          +NL   I +  ENP++    S    
Sbjct: 938  HKIFSQIKK--KEDIAAAIEKLDYEGVIDNKKINKENLQNLIYKRFENPIVEEWFSDKWT 995

Query: 845  SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
             ++E ++           +I  R D++      + + ++K               +I Q+
Sbjct: 996  VFNECAILSVDPTTNS--VIKRRPDRVIYDGDQMIVIDFKFGSP--------KDIYIQQI 1045

Query: 905  SIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              Y  +LK+    K +   L +V    +  +
Sbjct: 1046 ENYMTLLKEM-GYKKIKGYLWFVYSNNIKEV 1075


>gi|21233561|ref|NP_639478.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770527|ref|YP_245289.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993747|ref|YP_001905757.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|21115421|gb|AAM43360.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575859|gb|AAY51269.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167735507|emb|CAP53722.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris]
          Length = 658

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 105/723 (14%), Positives = 224/723 (30%), Gaps = 146/723 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +          I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRI-RGDGADGLTICTFHALGLK--FLQIEHAAAGLKRGFSIFDSDDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMHGAKPDAIEDAKNLISRAKNAGMSPEQAMAAARSNREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L   Y+        +DF+DLI     +L+  +    I     + I ++L+DE QD
Sbjct: 162 --AASLYERYQARLTTFNAVDFDDLIRLPVQILEANEE---IVMGWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLQQMGRDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  IS +         G 
Sbjct: 310 IRVW--------------------------ECRDSEHEAEKVAAEISFL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    + L+    +           +   +KD+++  R 
Sbjct: 335 AKQVPWSDFCILFRGNFQSRPLEKALQLLR----VPYHLTGGTAFLERQEVKDVLSWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISK 480
           I++ EDD +F+  ++SP        + ++                    +Q       + 
Sbjct: 391 IVNPEDDAAFLRAVQSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + ++   +      +    +           ++  +E         LDE    
Sbjct: 451 LSAFTDILRDMREHSATLPAGELVRTLADKSGLLNDLRNQSKDEAGFQRRKRNLDEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     +S  +L ++L       +       N+VR+MT+H +KGLE   VF+V   
Sbjct: 508 AEWFEGGPRGASASDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                      ++   +E  RLLYVG
Sbjct: 565 DGVLPHEVSL-----------------------------------EEGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA  QL +             +     ++D +  +    +    +       +     
Sbjct: 590 ITRAKQQLWMSYSKLTRKFGEHVRLKPSRFFDEIPAAELQRDGADPVADAERKKERANAG 649

Query: 712 YEW 714
              
Sbjct: 650 LAA 652


>gi|60681671|ref|YP_211815.1| putative helicase [Bacteroides fragilis NCTC 9343]
 gi|60493105|emb|CAH07886.1| putative helicase [Bacteroides fragilis NCTC 9343]
          Length = 1057

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 115/813 (14%), Positives = 253/813 (31%), Gaps = 99/813 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    +  ++N       L+ +TN LL +      S+++  KI   I +++ID
Sbjct: 337  VRLLTNIDEEVRQLNRENNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIRNVMID 392

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  + L  +                VGD KQSIY +   +   +    + 
Sbjct: 393  EFQDTSRMQWDNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLNKQ 446

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                            L  + RS  +I+   + +FS   +      +             
Sbjct: 447  LGYF------SIRTETLKTNRRSETNIIRFNNSIFSAAVDYLNEMYNKQLGSICEPLINA 500

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   Q      + +   +          +   + +++ +    
Sbjct: 501  YA--------DVEQESPRNKQQGYVKVEFLEPDEEHDYTEQTLISLGMEVEHLLQSG--- 549

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   ++  DI +LVRK K  P I              +V ++ F L   LAI  ++ 
Sbjct: 550  -------VKLNDIAILVRKNKSIPRIADYF---DKQLNYKIVSDEAFRLDASLAICMMLD 599

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
              R++   E+ +    +        +   +  + ++      +    ++           
Sbjct: 600  ALRYLSDPENRIVKAQLA-------TNYQLQILHSEYDLNSLLLHKAEELFPP------A 646

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             ++ + EL         ++    +    +  +        +    L  F +      Q+ 
Sbjct: 647  FLERMAELR----LMPLYELLEELFSLFELHR------IEQQDAYLFAFFDAVTDYLQSH 696

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S     I    +   + K   S     +RI ++H +KGLE   V L     ++ +  + 
Sbjct: 697  SSDPDSFIRYWNET-LSGKTIPSGEVEGIRIFSIHKSKGLEFHTVLLPFCDWKLENETNN 755

Query: 604  KKMHIMPSL--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            + +  +P     ++  I      S    ++      H +     +   LLYV  TRA   
Sbjct: 756  QLVWCVPQEAPFNELDIVPVNYSSAMAESVYRTDYLHERLQLWVDNLNLLYVAFTRAGKN 815

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            LII    +   ++ +        +  + +  ++    +    +        E        
Sbjct: 816  LII---WSRKGQRNTMAELLTGALPQAANKLDQEWDEEQVYELGDLCPSENEKKIDSGNK 872

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
               + E+    +       +                  S         L    SD++  N
Sbjct: 873  LTRKPEKLPVNMESMHPDIE---------------FRQSNRSADFIKGLSEEESDDRFIN 917

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
             G ++H L   I    +   +  I         +   +  K +     +    P +    
Sbjct: 918  HGQLLHTLFSAIE--TKDDIEPAIQRLI-FEGIIGSKEAEKQIRSLTVKAFSLPEVQEWY 974

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
            S +    +     I    K ++ + R D++ +  + + + ++K               + 
Sbjct: 975  SGEWR--LFNECAIIYKDKGVLQTRRPDRVMMKNEQVVVVDFKFGKAN--------KKYN 1024

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
             Q+  Y ++L      K++   L YV E ++  
Sbjct: 1025 KQVKGYMQLLSRM-GYKNITGYLWYVEE-EIIE 1055


>gi|325062343|gb|ADY66033.1| exodeoxyribonuclease V, beta subunit [Agrobacterium sp. H13-3]
          Length = 1061

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 119/930 (12%), Positives = 258/930 (27%), Gaps = 128/930 (13%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
             + K  + L    +     +        +   +     N  ++   +   DL   +  + 
Sbjct: 221  NVEKLEKNLALFKRVHRSPDLLDRDWKLWNDLRGLFVSNRSSK-TPEGYDDLATAIMAAA 279

Query: 105  DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
            D            K+       +  A+ +   YE  KK   ++DF D+I     LL+   
Sbjct: 280  DVLPAHPGPLADAKLH--LSCLIACAQEVMEAYETRKKALGLIDFADMITGAERLLRTDP 337

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                +   +  EI+ ++IDE QDT+ +Q+ ++  L                   VGD KQ
Sbjct: 338  A---VLQSVLGEIDCVIIDEFQDTNPVQFALLWQLGAHAT----------RTLLVGDVKQ 384

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            SI  F GA+P+                    +   L  ++RST  ++  V+ +       
Sbjct: 385  SIMGFQGADPRLSQAL---------ATANPDATQPLDRNWRSTPAVMQFVNAM------- 428

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
             G+            +R    G              +   + +                 
Sbjct: 429  -GVGLFGAHYNSLTPTRDPTSGPALEVLIATKSRSVRTASKPQ----------------- 470

Query: 345  LARRIAYTISNMIGTDTIFSNGKK---RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                IA  I+ ++      ++      R  +  DI+VLV +           R       
Sbjct: 471  --EHIAERIAAILTDGDTITDRFTRASRPARPSDIVVLVCRHTTAARYAEELRA----RG 524

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            + V  ++         +           +   D+    +L++         +    + + 
Sbjct: 525  VPVRISEDG--WATSPVVTAARAALAFAANPADVHSGLLLRT--LGPDPLPLQTALSAQT 580

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISR 520
            E     +               V+  +  L              L+L     R       
Sbjct: 581  EGRLGDDP--------------VLIRLAALSDKMASLPIGAALDLVLSVAGLRLWADCQP 626

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYS----------SLQELISELEQYPPTIKRA-----H 565
                    L          E+              + +  +  L+               
Sbjct: 627  NAAASHADLLRLEAEANEFERAHRDLKAASGFHGETAKVFLGWLDARANERDFDRRPDPA 686

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGS--QVFSHKHIKKMHIMPSLNDD----PGIP 619
            + N   V I+T H +KG E P+  + +  +  + +      +   +  ++D         
Sbjct: 687  ANNAEAVEIVTWHASKGREWPITVVAELDNAIEDWPGSTTTRFDALDRIDDMAVVLGSAA 746

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQ 678
            +      +        I+  ++  +     LLYV +TRA D++++         E+ + +
Sbjct: 747  LVHTPGFAAPEATRRFIEDRREDFEANAKNLLYVALTRARDRIVLEWPGFLKDREEDAPE 806

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
             T    V+      +          ++    I                     +      
Sbjct: 807  ATNLFHVFTDNCAPQIGTNCLKVGGVDCAAVIKQLPEMAGFTEFASSVSSVTPRFGPATP 866

Query: 739  IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
            + +   SP +   ++                     + N    RG  +H  L        
Sbjct: 867  LAEIPLSPWRLQPSQSRSAGEVPGTRSIALGAPWPTTLNDAA-RGTALHLAL-----RTY 920

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY----SEVSVSGK 854
              R +      +       A     +    T       +   ++ + Y    +E+ V   
Sbjct: 921  LTRPDLAHRLPSATE--LDAATLDMISERATA------LKHWLAAEGYTDLVAEIPV--- 969

Query: 855  INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            +   +    I G ID ++I      + ++K+              +  QLS Y  ++ + 
Sbjct: 970  LGFTRDGAEIPGTIDLLAIGSNGCLLIDHKSGGSGEG-----LGPYWPQLSSYAGLVSEL 1024

Query: 915  YPNKSLVC-LLIYVSEPKVFIIPQNKLNKA 943
            +P   L    + +V   ++  +    +  A
Sbjct: 1025 FPQHPLKGVAVFWVDHGRL-ELTDTIVQSA 1053


>gi|222528367|ref|YP_002572249.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|222455214|gb|ACM59476.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
          Length = 951

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 132/795 (16%), Positives = 271/795 (34%), Gaps = 103/795 (12%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           L ++ ++  T +LL   +V+  +          +++DE QD++ +Q  +  ++ E     
Sbjct: 185 LTYDLVLHRTFELLSIPEVNRDV----KSRFKFLIVDEFQDSNFLQKSIFENIAE----- 235

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    ++ VGD+KQSIY F GAEP+                     ++EL  +FR+
Sbjct: 236 --------NIYYVGDKKQSIYRFQGAEPEVFDE----------AMESCSQVLELCENFRT 277

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            ++       +    +    +   +   + ++    G +  V++                
Sbjct: 278 NSE-------LGKKIDMISSMLFPNYKPLSYKHQADGFLKVVEIV--------------- 315

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLVRKRK 384
                   +  +E      A  +A  I  M+ +    S G   KR ++  D  VL RK  
Sbjct: 316 --------NPTREEIIQNEAIYVAKKIKKMVESGFEISVGGKPKRKVKYSDFAVLSRK-- 365

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
               I  + + +  DY + +  N +  L +   I  L+ L   +   +    ++ +L + 
Sbjct: 366 -IQNIAHIYKRVFEDYDVPLDINFKRGLLEQKEIVPLLGLLEILQYPDKKSGYLRLLAND 424

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
           +F      +            ++  + K           V+K+I +           +  
Sbjct: 425 IFKVDRFTL------------LFCEMSKIECYVPE---DVLKFIAKQRDNLFVKKISEIL 469

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                  +   +    FG    + +  F +     E++   S+++L S +          
Sbjct: 470 YEFEDMFEYSYKVYKFFGKCAYENVRLFYDLA---EESKSFSIEDLCSFVNYQGERFSSF 526

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGS--QVFSHKHIKKMHIMPSLNDDPGIPIWI 622
            S N + V ++++H+AKGL  P+VFLV        F  +  K      +   +  I  + 
Sbjct: 527 SSFNDSAV-LLSIHSAKGLSFPIVFLVGLCESTGYFPGRSPKLRGSYDTSTREYIIAPFW 585

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII--CKHSNTSNEKKSNQRT 680
            +        + +    K+  +EE  RL YV +TR    L +          ++   +  
Sbjct: 586 MEK-----EYTRIKNISKQQEKEELKRLFYVAITRPMAGLFMINSSLREAIKKRGGVKSF 640

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
             ++  +          I+      KD            +   +     +  L DE +  
Sbjct: 641 GEEVGLNYILAKAEEIGIEKEVVEIKDTEEDLSNDFTCKQKNTISSVLPLMILPDEFENR 700

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ----TFNRGLIIHKLLQVIFTL 796
            K  SP      +      S     G    + L S  +        G  +H++L+    L
Sbjct: 701 FKFLSPSHIMDFKRCPAMFSLKYIMGLPVFDELSSREEIQQNAKVLGTTVHRVLE----L 756

Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
              K    + S           ++ K +   I    E+  +          E        
Sbjct: 757 TSLKNIQSLDSNIALAVLENNFEDEKIVKELILNFFESQFVKEIKDKVIKEES--ELPFY 814

Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
               + +I G ID++   +  + + ++KT+ H           +I QL IY K +K+ +P
Sbjct: 815 FKLSNQMIYGIIDKVYHLEDEVLLVDFKTNLHFDDTK---FNIYIPQLFIYTKAMKERFP 871

Query: 917 NKSLVCLLIYVSEPK 931
           +K +   + ++ E K
Sbjct: 872 SKKIFSSIFWLREGK 886


>gi|212635558|ref|YP_002312083.1| exodeoxyribonuclease V subunit beta [Shewanella piezotolerans WP3]
 gi|212557042|gb|ACJ29496.1| Exodeoxyribonuclease V, beta subunit [Shewanella piezotolerans WP3]
          Length = 1232

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 147/984 (14%), Positives = 303/984 (30%), Gaps = 152/984 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             K +WP    Q+ ++   + L          KKA    + +      + +    +    Q
Sbjct: 248  LKLIWPREREQIEELLHGLPL----NGARFGKKADNYPKLATMFDALDNWVAFGTALPPQ 303

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
            K     ++ + ++NK      E   + Q   ++  +R              +  + +   
Sbjct: 304  KVLEALSLNSLKLNKGG----EIPSREQAPILEHIERLAALIEELIPSFLYSAREGIAKR 359

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            + E K +  +L  +DL++     LK      ++   I +     LIDE QDT  +Q+++ 
Sbjct: 360  FAEQKLERNLLTPDDLLLTLAQALKDSQD-QFLSTTIAKRFPIALIDEFQDTDPLQFDIF 418

Query: 197  RSLTEDF--------FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
              + +                 +   +L  +GD KQ+IY+F GA+    +  +       
Sbjct: 419  NQIYQTKKQDDSSTTSSADKAQTESLSLLMIGDPKQAIYAFRGADIHTYIHAR------- 471

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                Q      L  ++RS   ++  V+ +FS  ++           ++  S    +    
Sbjct: 472  ---EQTAKHYNLDTNYRSNRQMVEAVNCIFSHRDDPFISDSIPFVAVKAASFSDKK---- 524

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGK 367
                   S  D+     +         L + ++  +LA   A  I+  +I  +   +   
Sbjct: 525  ---ILNESITDNSALRLRLLSEDPDKGLNKTTARQLLANDAADEIARLLIDAEQGLTAIG 581

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               ++AKDI VLVR R +  +I            +  V   R  + D +  ++++ +   
Sbjct: 582  TTQLKAKDIAVLVRDRHEANVIKQALE----QRNVGSVFLSRDSVFDTVDAREMLLILYA 637

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +   +D+ +    L + L  +  ++I        + + + E         +++       
Sbjct: 638  MSEPKDERALRSALATSLLGYRAEEIHAFNQDEDKRQLLLEQFAALQQQWLTR------- 690

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
               +  +    S  +    +L   +G ++            L E L      +      +
Sbjct: 691  -GIMPALLNLASQTNIIERLLHTNEGERRLTD------FRHLSELLQQ----KATELDGM 739

Query: 548  QELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              LI+  E      Q     +   ++  N V+I+T+H +KGLE P+ F+        + K
Sbjct: 740  SALINWFEQALIGNQANEESQLKLASEQNLVQIVTIHKSKGLEYPICFIPFVSLSRDNRK 799

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                M           I               +     K+ T  E  RLLYV +TR   +
Sbjct: 800  KPAPMLYHDHNKLVWDI-----------EQTDEGWDRQKRETLAEDLRLLYVALTRPVLK 848

Query: 662  LIICKHSNTSNEKK-------------------------SNQRTWYDMVYDSFHNDERVK 696
              +   +++   K                          S  R+    + D       +K
Sbjct: 849  CYLYITNHSRLTKSKGMTSQLHETAIGYLLGIENKICEYSELRSKAQQLADKAPIAIDLK 908

Query: 697  KIKLTNSINKDEWIAYEWSTHHPEN-----TPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            ++      + ++          P+N     T +  ++T  ++     + K L        
Sbjct: 909  ELPPAGDNSFEQVQRTLTVASDPDNKFAPKTLIRPQQTPWRVGSYSGLVKHLAHEKVQPG 968

Query: 752  NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE-----HKRKNFIT 806
             +        +         S  +  +  N G  +H +L++I              N + 
Sbjct: 969  ADDEQFPEIDVIIDEVDQQPSRFTFERGANAGSFMHLVLELIDFTNASLGLDEHLPNAMK 1028

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSVSGKIN--- 856
             Y               L      LL  P+       +          E+     I+   
Sbjct: 1029 KYA------IDESWTSVLKDWYLDLLYAPLATDNTLSLAQLSDSQKLVEMEFYLPISKLN 1082

Query: 857  ------------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ------- 891
                                    ++ G ID      Q  FI +YK++H           
Sbjct: 1083 ATKLNQLLIDFGYSAGLLFDDLQGMLKGFIDLTFEHNQQFFIADYKSNHLGDNLDLYNYQ 1142

Query: 892  --EIEHIPYTHIAQLSIYEKILKD 913
              +     + +  Q  IY   L  
Sbjct: 1143 SMKTAISSHRYDLQYIIYTLALHR 1166


>gi|58579865|ref|YP_198881.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84621878|ref|YP_449250.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58424459|gb|AAW73496.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84365818|dbj|BAE66976.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 658

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 105/723 (14%), Positives = 225/723 (31%), Gaps = 146/723 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +          I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMGERVAKRI-RGDGADGLTICTFHALGLK--FLQIEHAAAGLKRGFSIFDSDDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMHGAKPDAIEDAKNLISRAKNAGLSPEQAMVAARSNREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L   Y+        +DF+DLI     +L+  +    I     + I ++L+DE QD
Sbjct: 162 --AASLYERYQARLTTFNAVDFDDLIRLPVQILEANED---IVMGWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LKIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  IS +         G 
Sbjct: 310 IRVW--------------------------ECRDSEHEAEKVAAEISFL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    + L+    +           +   +KDL++  R 
Sbjct: 335 AKQVPWSDFCILFRGNFQSRPLEKALQLLR----VPYHLTGGTAFLERQEVKDLLSWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISK 480
           I++ +DD++F+  ++SP        + ++                    +Q       + 
Sbjct: 391 IVNPDDDVAFLRAVQSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + ++   +      +    +           ++  +E         LDE    
Sbjct: 451 LSAFTDIVRDMREHSASMPAGELVRTLAEKSGLLNDLRNQSKDETGFQRRKRNLDEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     +S  +L ++L       +       N+VR+MT+H +KGLE   VF+V   
Sbjct: 508 AEWFEGGPRGASASDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                      ++   +E  RLLYVG
Sbjct: 565 DGVLPHEVSL-----------------------------------EEGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA +QL +             +     ++D +       +    +       +     
Sbjct: 590 ITRAKEQLWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASAG 649

Query: 712 YEW 714
              
Sbjct: 650 LAA 652


>gi|325578339|ref|ZP_08148474.1| exodeoxyribonuclease V beta subunit [Haemophilus parainfluenzae ATCC
            33392]
 gi|325160075|gb|EGC72204.1| exodeoxyribonuclease V beta subunit [Haemophilus parainfluenzae ATCC
            33392]
          Length = 1213

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 133/984 (13%), Positives = 300/984 (30%), Gaps = 153/984 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETG--------NPTILKKAQTLQQASQTQCIEERFSL 68
             KD W     ++ D+     +  E          + TIL     +   ++ +        
Sbjct: 245  IKDAWLESAVEIRDLFDEEVVKKEKSCLNGKTYSSKTILSFVDEVTSWAKNRADITLNET 304

Query: 69   LSSFFLTQKFTP--QKNIITQEINKKSPDLKEKLKKSQD-EFIKIRDRFNTYKMFKSTLA 125
            L   F         + +   + +    P  +E     ++ +   +  +   Y        
Sbjct: 305  LVKKFTQSALDNAVKADFKKKGVRITHPAFEEIEALIEEIQPSDLFKKIILYHYR----- 359

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                 + +     E K  +    F+DL+    + L   +    +   I  +    +IDE 
Sbjct: 360  -----QGIQKKLLEYKANHPEKSFDDLLRLLKEALYG-EGGEQLAELIRFQYPFAMIDEF 413

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT  +Q+++   +  +        S       +GD KQ+IY F GA+    L+      
Sbjct: 414  QDTDALQYQIFSKIYHNETA-----SGNVGFMMIGDPKQAIYRFRGADIFTYLKAAEEAS 468

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
            +R            L  ++RS+  ++  V+++F            +   +   +++    
Sbjct: 469  QRFN----------LGTNYRSSQPLVEGVNRLFD--FKNDPFIYKNIEFLNVGAAKKN-- 514

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS- 364
                    +V Q ++Q  P    + +  D   Q+  A   A  I   + +      +F  
Sbjct: 515  --------LVFQLNNQPEPAFRFYINDKDESTQQDYAKACATSIQQWLKSAAENPVVFPN 566

Query: 365  --NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                + ++++A++I VLVR   +  L+    + L      SV  +DR  + +    K+L 
Sbjct: 567  ESKAENQILRAENIAVLVRGYTEADLVKKELQALGIA---SVYLSDRGNVFESNTAKELA 623

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             + +  LS  +    +  + + LF  +  +I +I     + +   E   ++        Q
Sbjct: 624  LILQACLSVTERP-ILNAIATALFGLNAAEIHQIHQDEIQWQRWAEKFVEY--------Q 674

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             + +    L  +       +    +L    G ++            L E L       ++
Sbjct: 675  QIWQRQGVLPMLHHLLLAENITEKLLSRPDGERKLTDLL------HLAEILQQAAALNES 728

Query: 543  SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              + L+    ++ ++     +    +    V+I+T+H +KGLE  +V+L   G+      
Sbjct: 729  EAALLRWFEKQIQDEGRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLGNAAKDPT 788

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              K  ++      +  +                 +  L +    E  RLLYV +TRA  Q
Sbjct: 789  KKKLFNLYYDKKQNKTLWDMQ----------DQHLDDLTQEVFAEELRLLYVALTRAKYQ 838

Query: 662  ----------------LIICKHSNTSNEKKSNQRTW-YDMVYDSFHNDERVKKIKLTNSI 704
                            L +        +           ++            I+LT+ +
Sbjct: 839  MAFVLPKALDKKWNALLYVLTQGEIGRKLDLPNNWDTQPLLEKFKQLLPNDVAIELTDVL 898

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP--IKNDINEPYILNPSTI 762
               E +    S  +      + E      +      ++        N+      L     
Sbjct: 899  KASEPLTLNISQENLSAEIFQGEIEQDWRVTSFSGIEQTHQRKAYLNESAVKKSLIFDDA 958

Query: 763  DTKGKT----------------NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                 +                N E +L   +    G ++H+  + +      +++N   
Sbjct: 959  KDYDASISTENITENLTALAHDNDEMVLDFPRGTQIGTLLHRYFEKVPFAQLAEKENIEK 1018

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLL----ENPMMTTAMSCDSYSEVSV----------- 851
                 N         +     I        ++  +          E++            
Sbjct: 1019 LCQDLNLVEEQFVAVQQWFEQILSTPILSNDDFTLAQINEKQCLKELAFYLNITSHFDVV 1078

Query: 852  -------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP--QEIEHI 896
                         S  +       ++ G +D +   Q   ++ +YK++      ++ +  
Sbjct: 1079 GFNRALATWHHLPSEPLQFDDIQGMVRGTMDLVFSHQDKYYLLDYKSNFLGEILKDYDQA 1138

Query: 897  P-------YTHIAQLSIYEKILKD 913
                    + +  Q  +Y   L  
Sbjct: 1139 ALKKAILEHHYDWQYLLYVVALHR 1162


>gi|298481368|ref|ZP_06999561.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. D22]
 gi|298272572|gb|EFI14140.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. D22]
          Length = 1056

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 123/865 (14%), Positives = 257/865 (29%), Gaps = 110/865 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            K+  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KHWATKTSPRYADIINLANSSLIQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +    N       L+ +TN LL +      S+++  KI   I++++IDE QDTS +
Sbjct: 345  EEVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIHNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +       +      
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNSLNDHIEHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +++   +++F+   N                 +      V   
Sbjct: 451  --PIRVKTLATNRRSETNVIRFNNRIFTAAANYLNGVYKQQLGKDCEDLQKAYADVV--- 505

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                 Q   +   +     S+ +   +          +   + +++ +           +
Sbjct: 506  -----QESPRSTEKGYVKVSFLEPDEEHVYTEQTLISLGEEVQHLLTSG----------V 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            Q  DI +LVRK K  P I         +    VV ++ F L   LAI  ++   RF+  +
Sbjct: 551  QLNDIAILVRKNKSIPRIADYF---DKELHYKVVSDEAFRLDASLAICMMLDALRFLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  ++   EL
Sbjct: 608  NNKIA-------------RAQLAVAYQNEVLQKGLDWNTLLLLPAENYLPAAFLEKTKEL 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      +    L  F +  +   Q++ S L   I
Sbjct: 655  R----LMPLYELLEELFSI------FEMNLIKDQDAYLFAFFDAVIDYLQSNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               ++   +           +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RYWDETLCSKTIPSGEVEG-IRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQ 763

Query: 612  --LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +   I      ++   +I  +     +     +   LLYV  TRA   LII     
Sbjct: 764  TAPFNALDILPINYSTQMAESIYGNDYLQERLQLWVDNLNLLYVAFTRAGKNLIIWSRKK 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      D      +       +                   +E 
Sbjct: 824  QKGTMSELLANTLPIVAQEEGIDWEEDCYEQGQLCPSE-------------------KER 864

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            IK   ++     +        +        S         +E   SD+   NRG ++H L
Sbjct: 865  IKTSTNKLTQKPEKLPIRMESMRHDIEFRQSNRSADFIQGIEEEDSDDHFINRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMT-TAMSCDSYS 847
              VI           I         +    E + +   +  +   +P +        +  
Sbjct: 925  FSVIE--TAEDIDPAIERLI--FEGVIRNDEKEKVAREVAKKAFSSPEIQDWYFGKWTLF 980

Query: 848  EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                   I   +K ++ + R D++ +    + + ++K     P         +  Q+  Y
Sbjct: 981  ---NECAIIYKEKGVLQTRRPDRVMMKDDQVVVVDFKFGKENP--------KYNKQVKGY 1029

Query: 908  EKILKDSYPNKSLVCLLIYVSEPKV 932
             ++L      K++   L YV E K+
Sbjct: 1030 MQLLTKM-GYKNITGYLWYVDEEKI 1053


>gi|150389970|ref|YP_001320019.1| UvrD/REP helicase [Alkaliphilus metalliredigens QYMF]
 gi|149949832|gb|ABR48360.1| UvrD/REP helicase [Alkaliphilus metalliredigens QYMF]
          Length = 678

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 100/579 (17%), Positives = 189/579 (32%), Gaps = 118/579 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K +   YE  K  +  +DF+D++    DLL+       +   +  +  +ILIDE QD + 
Sbjct: 170 KRVLDSYENFKVDHGKIDFDDMLTKCYDLLR---ARPGVLEHVRNQYQYILIDEFQDING 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+E I+ + E            + LF VGD+ QSIYSF GA P+ +L    I  K    
Sbjct: 227 VQFETIKLMAEPL----------QNLFVVGDDDQSIYSFRGANPQIILNFHDIYPK---- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L +++RS  +I+   +++    +                          Q+
Sbjct: 273 ----AQKITLNMNYRSQENIIKSANQLIKQNKCRVEK---------------------QI 307

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              V +  +         ++   +   +        R I   I  ++             
Sbjct: 308 IPTVKANSE-------IQYSEPKNREEEN-------RTICQFIELLMSEG---------- 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFIL 429
              KDI ++ R      L+         D  I  V  D  + + +H   KD++A  +   
Sbjct: 344 YSYKDIAIIYRTN----LLAGSLVDSLLDRNIPFVSRDHIYNVFEHWIAKDIIAYLKGAF 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +  D  S + ++  P    +++ + K  T   +  T  +   +               + 
Sbjct: 400 NYYDYDSLMRIINRPTRYITKNAMRKAQTYHKDFITALKVKGELMPYQNKNIAD----LS 455

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV------IDVLDEFLNFTLRNEQNS 543
             ++  ++ +  +    I       +   +    +       I+ L+E    + R+E+  
Sbjct: 456 YHLNNIKYLTTKEAIKYIRKDIGYDRHIENYCAEKRIRCEGLIETLNELEEASSRHEKID 515

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
              L  +                     V ++T+H+AKGLE  VV ++     V  H   
Sbjct: 516 GF-LTHIKDMKSSLSQKSFHRTEEEQ--VELLTMHSAKGLEYKVVIILGAIEGVIPH--- 569

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                    EE  RL YV MTRA ++L 
Sbjct: 570 -------------------------------HKSMDTLEDIEEERRLFYVAMTRAKERLY 598

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           I        +     R   ++  +       V   ++ +
Sbjct: 599 ISSSLIRYEKPTEPSRFINEIRQNDNKKGSFVIGQEVEH 637


>gi|53713424|ref|YP_099416.1| ATP-dependent helicase [Bacteroides fragilis YCH46]
 gi|52216289|dbj|BAD48882.1| ATP-dependent helicase [Bacteroides fragilis YCH46]
          Length = 1057

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 114/813 (14%), Positives = 253/813 (31%), Gaps = 99/813 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    +  ++N       L+ +TN LL +      S+++  KI   I +++ID
Sbjct: 337  VRLLTNIDEEVRQLNRENNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIRNVMID 392

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  + L  +                VGD KQSIY +   +   +    + 
Sbjct: 393  EFQDTSRMQWDNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLNKQ 446

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                            L  + RS  +I+   + +FS   +      +             
Sbjct: 447  LGYF------SIRTETLKTNRRSETNIIRFNNSIFSAAVDYLNEMYNKQLGSICEPLINA 500

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   Q      + +   +          +   + +++ +    
Sbjct: 501  YA--------DVEQESPRNKQQGYVKVEFLEPDEEHDYTEQTLISLGMEVEHLLQSG--- 549

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   ++  DI +LVRK K  P I              +V ++ F L   LAI  ++ 
Sbjct: 550  -------VKLNDIAILVRKNKSIPRIADYF---DKQLNYKIVSDEAFRLDASLAICMMLD 599

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
              R++   E+ +    +        +   +  + ++      +    ++           
Sbjct: 600  ALRYLSDPENRIVKAQLA-------TNYQLQILHSEYDLNSLLLHKAEELFPP------A 646

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             ++ + EL         ++    +    +  +        +    L  F +      Q+ 
Sbjct: 647  FLERMAELR----LMPLYELLEELFSLFELHR------IEQQDAYLFAFFDAVTDYLQSH 696

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S     I    +   + K   S     +RI ++H +KGLE   V L     ++ +  + 
Sbjct: 697  SSDPDSFIRYWNET-LSGKTIPSGEVEGIRIFSIHKSKGLEFHTVLLPFCDWKLENETNN 755

Query: 604  KKMHIMPSL--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            + +  +P     ++  I      S    ++      H +     +   LLYV  TRA   
Sbjct: 756  QLVWCVPQEAPFNELDIVPVNYSSAMAESVYRTDYLHERLQLWVDNLNLLYVAFTRAGKN 815

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            LII    +   ++ +        +  + +  ++    +    +        E        
Sbjct: 816  LII---WSRKGQRNTMAELLTGALPQAANKLDQEWDEEQVYELGDLCPSENEKKIDSGNK 872

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
               + E+    +       +                  S         L    SD++  N
Sbjct: 873  LTRKPEKLPINMESMHPDIE---------------FRQSNRSADFIKGLSEEESDDRFIN 917

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
             G ++H L   I    +   +  I         +   +  + +     +    P +    
Sbjct: 918  HGQLLHTLFSAIE--TKDDIEPAIQRLI-FEGIIGSKEAEEQIRSLTVKAFSLPEVQEWY 974

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
            S +    +     I    K ++ + R D++ +  + + + ++K               + 
Sbjct: 975  SGEWR--LFNECAIIYKDKGVLQTRRPDRVMMKNEQVVVVDFKFGKAN--------KKYN 1024

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
             Q+  Y ++L      K++   L YV E ++  
Sbjct: 1025 KQVKGYMQLLSRM-GYKNITGYLWYVEE-EIIE 1055


>gi|313792364|gb|EFS40463.1| putative exodeoxyribonuclease V, beta subunit [Propionibacterium
            acnes HL110PA1]
          Length = 1078

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 124/868 (14%), Positives = 245/868 (28%), Gaps = 140/868 (16%)

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A  +        K   V  F+DLI +    L+           +      +++DE QDT 
Sbjct: 205  ALSVREDVRRRSKSRSVHTFDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTD 264

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +QWE++R                  L+ +GD KQSIY+F GA+        +       
Sbjct: 265  PLQWEILRR----------AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ------- 307

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGT 307
                   ++ L +++R+   I+  V+ +FS  +    +S +  +      R       G 
Sbjct: 308  ---SASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHDISMELVTAHHQESRIKTAATDGP 364

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               W Q       Q     +  T+  D    E         +   I  + G   +     
Sbjct: 365  RYHWSQPFQIRCLQAPAGAQLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDG 417

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LVR R+    +               V +    +    A +DL+ L   
Sbjct: 418  LRPLRPTDIAILVRTRRRGAELATALSQAHQ----PAVFSGASPVWSSQAAEDLITLLEA 473

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D+     +  S L      D+    ++      +              +  V   
Sbjct: 474  LEN-TDERLRTSLCLSDLIGAPPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAA 532

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +H                 ++    G +             +             + ++ 
Sbjct: 533  LHR----------PGVLVRLVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATA 577

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  + +       R   ++   V IMT+H AKGL  PVV L D  +     + I    
Sbjct: 578  AWIREQQQLAGDDEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPI 637

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +     D     + I    +  +I    I+  ++  + E  RLLYV +TRA   + +   
Sbjct: 638  VWH---DGQRRVLDISSQGTDRSI---AIESHEEDERGENLRLLYVALTRARSAVRLWWS 691

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +     +  +V       E    +  T+        +   +T           
Sbjct: 692  PCP---LRHRWSAFQRLVEMDRTTGELGSGVAGTDPGTLPWLNSGPIATVIAPANQKLLT 748

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYI------LNPSTIDTKGKTNLESLLSDNQ--- 778
             ++        +P+ L  P+               L+ +  +      ++  + D     
Sbjct: 749  RSVSAQPRACVVPRTLTRPLDTAFARTSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDD 808

Query: 779  ----------TFNRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLS 827
                        + G ++H +L+ I T         +  +         P      L  S
Sbjct: 809  TAPGLCGLPGGTSFGTLVHTVLEYIDTAAIDLSSEVLSITRRALRMSPLPDVPPSELATS 868

Query: 828  ITRLLENPM--------MTTAMSCDSYSEVSVSGKIN----------------------- 856
            + ++L + +        +      D  +E++    +                        
Sbjct: 869  LEQVLHSDLGPLAPGMTLADFSPADRLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPP 928

Query: 857  -------------CPKKDIIISGR----IDQISISQQNI-FIFEYKTHHHVPQEI----- 893
                          P  D  + G     ID +         + +YKT+            
Sbjct: 929  DDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHM 988

Query: 894  --------EHIPYTHIAQLSIYEKILKD 913
                          +  Q  +Y   L  
Sbjct: 989  YDAHTMRTMMFSSHYPLQGLLYSAALHR 1016


>gi|260654704|ref|ZP_05860194.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
 gi|260630720|gb|EEX48914.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
          Length = 1181

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 155/936 (16%), Positives = 281/936 (30%), Gaps = 86/936 (9%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE-------R 65
                  +     +     +      ++        K A  ++  +     +E        
Sbjct: 243  RAAYEPEARAQVFRLRRILRDAAVRNLLENGKG--KFASKMRALAAPFPHQENETKRGCD 300

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            F L  +  L +        +         DLKE+LK        +RD +   +      +
Sbjct: 301  FLLELADALNETDDKSSKYLKATFGWSRKDLKERLKHFLPLVRIVRDGWTDDESQLR-GS 359

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               LA    A +EE KK N ++ + D+I+    ++              +   H+L+DE 
Sbjct: 360  LAKLAALCWAVWEEHKKANNLISYSDMILKAKRVIAAAPE-------WSKRFRHVLVDEY 412

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT ++Q +++ SL++              LF VGD KQSIY F  A+P  + R      
Sbjct: 413  QDTDVLQDQLVTSLSQQSGAA---------LFLVGDVKQSIYRFRHADPSLLDR------ 457

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
             R+  A      I L ++FRS+  ++  ++  FS+          +T  +  R+      
Sbjct: 458  -RSEQARWDGKFIALNVNFRSSPAVIDAINGRFSVVYEHGLGRNLTTPYMNLRAPERADG 516

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD---TI 362
                                    T    + PQ  +   LA+R+A  ++ +         
Sbjct: 517  TREA---AEAGPVGELLAVAPAECTDEVPAEPQPIARQRLAKRLAERLAELKENGLTVRD 573

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
              +G++R I  KD+ VLV  R          +       + +             I+DL 
Sbjct: 574  RESGERRPIDWKDMTVLVPTRTQYAP----LQTGFEQAGVPLRLAGNVDYYARYDIRDLS 629

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            AL RF+ S          L SPL      D  +I         +        +    +  
Sbjct: 630  ALLRFLTS-GSPFDLASFLCSPLSGVPLADAQRITQ-------LTASSPDPLSLLAQEAP 681

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             +   + +L   A F       + +L                V   L + L      E  
Sbjct: 682  ALAHELADLKGEAAFFGASRVVSWLLRRD--LSSVAPHKRWGVASDLRQALGQFEAFESA 739

Query: 543  SYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
               SL       +Q      R  + +       V   TVH+AKGLE P+V +    +   
Sbjct: 740  FGPSLLAESRFFDQACRQKLRPEAESGFFSDCAVTATTVHSAKGLEFPLVAVFGLEAAPS 799

Query: 599  SHKHIKKMHIM----PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            S        I                  P       + +      ++  ++E+ RL YV 
Sbjct: 800  SRSFGLDESIHLGAVTGKWPGNLTASLSPVPPDGPRLKTIHDLAEEEPEEDEWKRLYYVA 859

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            +TRA D LI+        + K       +        +   +      ++          
Sbjct: 860  LTRARDWLILAGLKTAKGDAKKKSWMALEKFCMPEAFEAASEASATEENLEAAPRERPSS 919

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
            +    +   + R      L         L++         +         + +    S  
Sbjct: 920  AARVADGPVVRRAVHAPHLTSISASSFVLWNRCPACWRAVFR-----QGFQDRRENFSGE 974

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS------- 827
                    G ++H  L +    P+      +      +  L P    ++L          
Sbjct: 975  ETPGGPRTGELLHWALALWDYTPQ-----QLELILRPDGPLVPPLHLRSLWREPRTKSWI 1029

Query: 828  ---ITRLLENPMMTTAMSCDSYSEVSVSGKINCPK-KDIIISGRIDQISISQQNIFIFEY 883
               I      P    A        +     +   +  ++ ++G  D         FI +Y
Sbjct: 1030 RQLIEGFTTLPSFKMACQAKLSGTLEREKPLRLDRPDNLALTGIADITWTDGACRFIRDY 1089

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
            KT +      E        QL  Y  IL+ + P ++
Sbjct: 1090 KTGNFHAAAQEDAVQ----QLRFYGTILRRTAPQRT 1121


>gi|21244998|ref|NP_644580.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21110722|gb|AAM39116.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 658

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 106/723 (14%), Positives = 226/723 (31%), Gaps = 146/723 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +      +   I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRI-RGDGAEGLTICTFHALGLK--FLQIEHAAAGLKRGFSIFDSDDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMHGAKPDAIEDAKNLISRAKNAGLSPEQAMAAARSTREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L   Y+        +DF+DLI     +L+  +    I     + I ++L+DE QD
Sbjct: 162 --AASLYERYQARLTTFNAVDFDDLIRLPVQILEANED---IVMGWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  IS +         G 
Sbjct: 310 IRVW--------------------------ECRDSEHEAEKVAAEISFL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    + L+    +           +   +KDL++  R 
Sbjct: 335 AKQVPWSDFCILFRGNFQSRPLEKALQLLR----VPYHLTGGTAFLERQEVKDLLSWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISK 480
           I++ +DD +F+  ++SP        + ++                    +Q       + 
Sbjct: 391 IVNPDDDAAFLRAVQSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + ++   +      +   L+           ++  +E         LDE    
Sbjct: 451 LSAFTDILRDMREHSSSMPAGELVRLLADKSGLLNDLRNQSKDETGFQRRKRNLDEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     +S  +L ++L       +       N+VR+MT+H +KGLE   VF+V   
Sbjct: 508 AEWFEGGPRGASASDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                      ++   +E  RLLYVG
Sbjct: 565 DGVLPHEVSL-----------------------------------EEGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA +QL +             +     ++D +       +    +       +     
Sbjct: 590 ITRAKEQLWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASAG 649

Query: 712 YEW 714
              
Sbjct: 650 LAA 652


>gi|117928982|ref|YP_873533.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
 gi|117649445|gb|ABK53547.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
          Length = 1164

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 145/1039 (13%), Positives = 261/1039 (25%), Gaps = 170/1039 (16%)

Query: 38   SMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            ++  G    L+           +   + +   + +  L+      +  I      +    
Sbjct: 135  ALRLGVEPGLRLIGQAASWQFARRAVDAYDGPMDAVTLSPTTVTNRVFILAGELAQHRVD 194

Query: 97   KEKLKKSQDEFIKIRDRFNTYKMFKSTLA-----------SLTLAKYLNAHYEEAKKKNC 145
             E + +  D+           +    T+A                  +   Y   K+   
Sbjct: 195  VESVAEFCDQLAAKLCALPYPRGRSRTMAEDVERIVDQLKLRRQLLPIVVDYRARKRDAE 254

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            VLDF D +     L    ++   +          +L+DE QDTS  Q + +R+L      
Sbjct: 255  VLDFADQMALAATLA---ELFPEVGAAERAAFRAVLLDEFQDTSHAQLDFLRALFLPKTA 311

Query: 206  GKNTHSSP---RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
              +  S       L  VGD  Q+IY + GA            +     A    ++  L  
Sbjct: 312  PPDAESPAAAQPWLTVVGDPAQAIYGWRGASHGT-------FRALIAEAPCAVTVFPLAT 364

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            SFR++ +IL V + +      A+ L     TT              +         + + 
Sbjct: 365  SFRNSPEILAVANLI------AEPLRAGRDTTAVPVLRPRDDAPVGEARCACYPTVEDEA 418

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                E              A    R IA  +        +    + R +    I +L   
Sbjct: 419  AAVAEYVARVLREDEAARQAGEPGRSIAILLRKWRQLLPLEPALRARGVP---IRILGVG 475

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFIL----TDHLAIKDLMALGRFI---------- 428
                                   G+    L       +   DL AL R+           
Sbjct: 476  GLLDQPEIEDVVATLQVLVDPDRGDALMRLLTGARWRIGAADLAALHRWARRCAAADDRA 535

Query: 429  ------LSQEDDLSFVCMLKS--------PLFNFSEDDIFKICT-QRHETETVYEYIQKF 473
                  L   DD +      S        PL   + D +  +    R  TE        F
Sbjct: 536  ATESQTLHGPDDRAATESQTSHGPDDAGAPLGGDAADSLSLVDALDRLRTERWVTQSGWF 595

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
            +  G  +   +   +H L          D    ++       + ++R        LD FL
Sbjct: 596  SVEGGRRLARLADELHHLRSRL-SQPLPDLVAEVIATIGVDVEVLARGEQPGRSNLDAFL 654

Query: 534  NFTLRN-EQNSYSSLQELISELEQYP---------------PTIKRAHSANHNEVRIMTV 577
                   +     +L   +  LE                       A       V ++TV
Sbjct: 655  EVAADYADAAENPTLGGFLDYLEAAGYAERGLDRPEDDAAVAFDAAAGERRPGVVDVLTV 714

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIK--------KMHIMPSLNDDPGIPIWIPQSKSRN 629
            H AKGLE  VV +      VF               +   P   D   +P     +    
Sbjct: 715  HAAKGLEWDVVCVPGMVDGVFPTGVRNTTGWLTSAHLLPWPLRGDRDALPSIDMTTADDQ 774

Query: 630  N----IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            +    ++ D  + +K     E  RL YV +TRA   L    +      +      +    
Sbjct: 775  SAVVALLKDFAEAVKCHALAEERRLAYVAVTRARRWLFCTGYRWDDTTRAHADSAFLTGD 834

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                   E    +    + N              +     R +  +     +        
Sbjct: 835  VLGAMRVECWTPVPDDGTANPRLVDGPRRVAWPVDPLGSRRPQVERAAALVRDAVAVAGE 894

Query: 746  PI----------------------------------------------KNDINEPYILNP 759
            P+                                                   +  ++ P
Sbjct: 895  PMSGRDDGSAEALTGGEAEPRPRTPIPATQWEQVDGWSRDIAVLLAERSRATEQSAVVLP 954

Query: 760  STIDTKGKTNLESLLSDNQT-------------FNRGLIIHKLLQVIFTLPEHKRKNFIT 806
              +       L    S                   RG   H+ L+          +    
Sbjct: 955  EQLSVTQLVALREDPSRFAARLRRPLPNRPVPSARRGTAFHRWLEQ---------RFAAP 1005

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG 866
                 +     A         +   L+   + +  +  S   V V    +      +I G
Sbjct: 1006 RLLDVDELPGAADSDAAPDDELEA-LKTAFLESHWA--SRHPVDVEVPFHLVVDGRVIRG 1062

Query: 867  RIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCL 923
            R+D +         I ++KT      E          QL  Y     +    P + +   
Sbjct: 1063 RMDAVFADPDGGFTIVDWKTGRRPRGEYAEAA---AVQLGAYRLAWSELSGVPLERVRAT 1119

Query: 924  LIYVSEPKVFIIPQNKLNK 942
              Y+ +   +  P + L++
Sbjct: 1120 FCYLRDGGDYA-PADLLDR 1137


>gi|254523343|ref|ZP_05135398.1| ATP-dependent DNA helicase Rep [Stenotrophomonas sp. SKA14]
 gi|219720934|gb|EED39459.1| ATP-dependent DNA helicase Rep [Stenotrophomonas sp. SKA14]
          Length = 658

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 104/729 (14%), Positives = 229/729 (31%), Gaps = 146/729 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K L         ++      ++      I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRLR---EQDADEVTICTFHALGLKFLQIEHAAVGLKRGFSIFDADDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D+K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMYGAKPDDIEDMKNLVSRAKNAGLSPEQAMAAARSNREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  +   Y+        +DF+DLI     +L++      I     + I ++L+DE QD
Sbjct: 162 --AASVYERYQLRLTAFNAVDFDDLIRLPVQILEENPE---IAMAWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L  D                VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKQLAGD----------KGNFTCVGDDDQSIYAWRGANPENLQQMGRDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +           ++   S       
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIANNPH---------EHLKKLWSDQADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +  ++   A ++A  I+            +
Sbjct: 310 IRVW--------------------------ECRNSEHEAEKVAAEIA---------FVAQ 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            R +   D  +L R    +  +    + L+    I        +  +   +KD +A  R 
Sbjct: 335 SRNVPWSDFCILFRGNFQSRPLEKAMQLLR----IPYHLTGGTMFLERQEVKDTLAWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISK 480
           +++ +DD +F+  ++SP  +     + K+     E +            +Q+      + 
Sbjct: 391 LVNPDDDTAFMRAVQSPKRDVGAGTLAKLAELAQEKDMPMAQAAEAIGALQQLPPRAANS 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + +L    +  +  D    +        +   +   E       + ++E    
Sbjct: 451 LARFTDILRDLRAQTRQVTSGDMIRKVAKESGLLSELRQQAKEEASYQRRANNIEEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     ++  +L  +L       +       N+VR+MT+H +KGLE P VF+V   
Sbjct: 508 AQWFEGGPRGATAADLAGQLALLS---RSDKDEGGNQVRMMTMHASKGLEFPYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                       +   +E  RLLYVG
Sbjct: 565 DGVLPHQVSLD-----------------------------------EGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA  QL +             +     +++ +       +    +       +     
Sbjct: 590 ITRAKIQLWMSYSKLTRKFGEHVRLKPSRFFEEIPAEEIQRDGADPVADAARKKERASAG 649

Query: 712 YEWSTHHPE 720
                   +
Sbjct: 650 LAAIEALFD 658


>gi|256419942|ref|YP_003120595.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
 gi|256034850|gb|ACU58394.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
          Length = 1066

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 130/895 (14%), Positives = 270/895 (30%), Gaps = 144/895 (16%)

Query: 69  LSSFFLTQKFT-PQKNIITQEINKKSPDL--KEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           L+  F T K      + I + I      L  +E     +     +R    T ++ +    
Sbjct: 156 LAQLFSTMKKEGWTVDYINEAITAYIESLPSREDFIAKKAAGTYVRGDVRTDRIAREKEK 215

Query: 126 SLTLAKYL--NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            + L   +     Y          DF+D+I       ++      +     ++  +IL+D
Sbjct: 216 MIRLQAAVEQFPVYTAFMHTAGRYDFDDMINWVIGAFEEYPD---LLADYREKYQYILVD 272

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDTS  Q  +++ LTED             +F VGD+ QSIY F GA  + +      
Sbjct: 273 EYQDTSGTQNRLVQLLTEDQES--------PNIFVVGDDDQSIYRFQGASIENMALFAET 324

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         I L  ++RS   IL V   + +   N++ +++      +  ++   
Sbjct: 325 FAD-------NLHTIVLTHNYRSVQPILDVAMSLIANNGNSRLVNQLPELDKQLIAAIPA 377

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
               V +  +  +  D   +                         I   I+ ++      
Sbjct: 378 AQSPVPVIRRYNTSRDEMTD-------------------------ITQQIARLLEKG--- 409

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                  I    I V+ R+ K                ++         L +    + +++
Sbjct: 410 -------IAPGRIAVIYRENK----YGEELARYCRQQQLPFYSKRSINLFEVPFARKVLS 458

Query: 424 LGRFILSQED-----DLSFVCMLKSPLFNFSEDDIFKICTQRHETE-----TVYEYIQKF 473
           + R++  + D     D     +L    +N    ++ KI  +  E       ++ +Y+Q++
Sbjct: 459 ILRYLACEVDTPYSGDDLLFSILHYDFYNIPAIEVAKISIRAAEKGYREKSSIRQYLQEW 518

Query: 474 AN---------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGN 523
           A+                     + +LI  A   +    F  ++           S    
Sbjct: 519 AHTRNLTLFTAAPEQALVDFSAMMEKLIRDAHNLTLQQLFAAVINECGVLSYAMQSPEKP 578

Query: 524 EVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKR----AHSANHNEVRIMTVH 578
            ++ VL    +F       +   ++   +  ++              S N   + ++T H
Sbjct: 579 WLMKVLQALFDFVKEETHRNPDLTIAPFMDMVDLMRHNGITIPLVQVSGNETGINLLTAH 638

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGLE   VF+    + ++  K                                     
Sbjct: 639 GAKGLEFEYVFIAGANAYLWEEKVKNGSGFSFPDTLFTTTLTST---------------- 682

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                ++E  RL YV +TRA   L I      ++ K      +   + D           
Sbjct: 683 ----DEQELRRLFYVAITRAEKHLYISYPEYRTDGKPLEPSLFVTEILDQHQ-------- 730

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                +  ++ I  E             E   +    +Q +   L +    ++       
Sbjct: 731 -----LPVEKVIIPEEVQFRFAALDYTPELAPEIAKTDQPLIDNLLANFVMNVTALNNYL 785

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-------TLPEHKRKNFITSY--- 808
              +    K  +      ++    G  +H  L+ +F             ++ FI  +   
Sbjct: 786 DCPLGFYYKNLVRVPSGRSENTEFGSAVHYALEKLFLKMQESGRYEFPSKEEFIRDFTWS 845

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI-NCPKKDIIISGR 867
             +N + +  + ++  L     +L++              VSV   I +     + + G+
Sbjct: 846 MLRNRESFTRESFERRLEYGRDILDH--YYDTWLPHWNKVVSVERNIRSVVVNGVPLKGK 903

Query: 868 IDQISISQQNIFIFEYKTH-----------HHVPQEIEHIPYTHIAQLSIYEKIL 911
           ID++      + + +YKT               P +       +  Q   Y+ +L
Sbjct: 904 IDKLEFDGNLVNVVDYKTGDYEKTIKEYQKFVRPDQQHPHGGDYWRQAVFYKILL 958


>gi|307700038|ref|ZP_07637087.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
 gi|307614799|gb|EFN94019.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
          Length = 1213

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 148/987 (14%), Positives = 290/987 (29%), Gaps = 163/987 (16%)

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
            +++         +  LL+S  L +   P K              ++ L         +  
Sbjct: 239  MKKLYADFLATAQRELLASQKLDEALEPLKAAKKAAKAANDKQREKALGAEITNL-DLPL 297

Query: 113  RFNTYKMFKSTLASLTL---AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                 K  + T+  +     A  +   +   K +    DF D      +LLKK    A I
Sbjct: 298  TSQAKKDLERTVEVMRFGVDAVEVIRAFNTRKAQLRFADFSDQTREVVELLKK---VANI 354

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                 Q    +L+DE QDTS+ Q + + +L                + AVGD  Q+IY++
Sbjct: 355  SQSYQQRYQLVLLDEFQDTSVAQLKYLSALF-----------RNHAVTAVGDPNQAIYAW 403

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD----KVFSIPENAQ 285
             GA    +        K  ++   K + + L  S+R+ A IL V +    ++        
Sbjct: 404  RGASAASI----EEFPKYFSDNPSKVASLTLRTSWRNDAAILNVANCIASEIAEQNRTEG 459

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ-QESWTSYFDSLPQESSASI 344
                     +  R      +G V     +    ++Q      E+W    +   ++++A  
Sbjct: 460  KNENFIMPDLSLRPGASPDLGRVYGAPFLTDTDEAQAVANFLENWRKDLEQAVEKTAAWQ 519

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A R+                            VL RK+    ++  + R L +   I  
Sbjct: 520  AAGRVGQ------------------PPSLPTAAVLCRKKS---IMLPILREL-SRRGIPF 557

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                R        +  + A    +++ ++  S + +L    F  S +D+  I      T 
Sbjct: 558  QLQARESALLDPGVVLVRAALNVVVNPQNSGSLLLLLN--RFRLSREDLEAISKAAGRTV 615

Query: 465  TVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
              ++ + K       +  G  +   + + I +L     + +P     L         +  
Sbjct: 616  LPFQEVMKSQIGASVSQPGRERLAILREIIAKLEKHVSYATPLQMAKLAAKLLGLDIEQR 675

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI----KRAHSANHNEVRI 574
                    +    FL+     E++  ++L+  +  L+          +   + +  +V++
Sbjct: 676  IPGTPYQEEAFTIFLSIIEDFERSGQATLRAFLEWLDVAESEEKEVGQFQEAVDTKKVQV 735

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDDPGIPIWIPQSKSR 628
            +TVH AKGLE   V +       F     +           P   D   +P +    +  
Sbjct: 736  ITVHAAKGLEWDYVAVPGLSEGNFPDNRTEIWLKNYFVLPYPLRGDRDSLPQYEINLRQL 795

Query: 629  NNIVSDLIKHLK------KSTQEEYNRLLYVGMTRASDQLIICKHSNTS----------- 671
                       +          +E   L YV  TRA   L +                  
Sbjct: 796  GEKDRSRKFLEQYDGVRTLHHLKEEANLAYVAFTRAKSHLFLSMSWFKGCNVNTAKPGAF 855

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHND------ERVKKIKLTNSINKDE 708
                             N+  +   +   M    +  D      E  +            
Sbjct: 856  FRVLLGEDAKLFCMEKPNKGMTLVNSQEFMHLPDWLGDINPCFTEPEEANPNVQEFEAGL 915

Query: 709  WIAYEWSTHHPE---------------------------NTPLEREETIKQLMDEQKIPK 741
            W A  W    PE                               +  E+        ++ K
Sbjct: 916  WQAPSWLDLPPESIRPETFPWDVAGLQRSYQMVTVAAENPPDSQALESAIPGSLSWRVWK 975

Query: 742  KLFSPIKN----------DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
               +P                    L+ S+ D   +      L  +     G+I+H  + 
Sbjct: 976  LYNAPRPRLDSSMLLRQIAATSVVKLDESSDDFMLQKLRPLPLPPSPAARLGIIMHAWIA 1035

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851
                 P     +   +    +++L      +       + L+   +          E S 
Sbjct: 1036 QQLGQPTLDIPDGSEATLDADSRLKLDCYRQTWEN--LQFLKGKAVMDI-------EHSG 1086

Query: 852  SGKINCPKKDIIISGRIDQISISQ--QNIFIFEYKT-HHHVPQEIEHIPYTHIAQLSIYE 908
            S  +    +   +  RID +   +     +I ++KT  H  P + E     ++ QL IY 
Sbjct: 1087 SLVVGEGTEGFEVPLRIDAVFQERSCGTTWIVDWKTASHPNPPQYE----RYLHQLGIYR 1142

Query: 909  KILKDSYPNK---SLVCLLIYVSEPKV 932
                 ++P      + C  +Y+ E + 
Sbjct: 1143 LYWLQTHPELDSQDIQCAYVYLKEGET 1169


>gi|327329917|gb|EGE71671.1| exodeoxyribonuclease V, beta subunit [Propionibacterium acnes
            HL097PA1]
          Length = 1078

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 121/851 (14%), Positives = 241/851 (28%), Gaps = 144/851 (16%)

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F+DLI +    L+           +      +++DE QDT  +QWE++R           
Sbjct: 224  FDDLIGDLVKALRDPYRGPLACATLAHRFGLVMVDEFQDTDPLQWEILRR---------- 273

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                   L+ +GD KQSIY+F GA+        +              ++ L +++R+  
Sbjct: 274  AFHGHSNLWLIGDPKQSIYAFRGADIHAYQDAAQ----------SASHVLHLDVNYRTDK 323

Query: 269  DILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             I+  V+ +FS  +    +S +  +      R       G    W Q       Q     
Sbjct: 324  PIVEAVNTLFSNAQLGHDISMELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGA 383

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
            +  T+  D    E         +   I  + G   +      R ++  DI +LVR R+  
Sbjct: 384  QLNTATSDQFVTED-------LVNQVIMMLEGGTVVQDGDGLRPLRPTDIAILVRTRRRG 436

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
              +               V +    +    A +DL+ L   + +  D+     +  S L 
Sbjct: 437  AELATALSQAHQ----PAVFSGASPVWSSQAAEDLITLLEALEN-TDERLRTRLCLSDLI 491

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
              +  D+    ++      +              +  V   +H                 
Sbjct: 492  GATPADLAASDSRVRSDLAIDLARWSSTWTMTGVWGTVEAALHR----------PGVLVR 541

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
            ++    G +             +             + ++   +  + +       R   
Sbjct: 542  LVSMAGGERYVTDLRQVAQKAHI-----AACEGRLTATATAAWIREQQQLAGDDEPRRLD 596

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            ++   V IMT+H AKGL  PVV L D  +     + I    +     D     + I    
Sbjct: 597  SDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWH---DGQRRVLDISSQG 653

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
            +  +I    I+  ++  + E  RLLYV +TRA   + +          +     +  +V 
Sbjct: 654  TDRSI---AIESHEEDERGENLRLLYVALTRARSAVRLWWSPCP---LRHRWSAFQRLVE 707

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                  E    +  T+        +   +T            ++        +P+ L  P
Sbjct: 708  MDRTTGELGSGVAGTDPGTLPWLNSGPIATVITPANQKLLTRSVSAQPRACVVPRTLTRP 767

Query: 747  IKNDINEPYI------LNPSTIDTKGKTNLESLLSDNQ-------------TFNRGLIIH 787
            +               L+ +  +      ++  + D                 + G ++H
Sbjct: 768  LDTAFARTSYSGLTANLHAAVSEPMTDGLIDEPVDDETVDDTAPGLCGLPGGISFGTLVH 827

Query: 788  KLLQVIFTLPEHKRKNFI---TSYCTKNAKLWPAKEYKNLLLSITRLLENPM-------- 836
             +L+ I T         +              P      L  S+ ++L + +        
Sbjct: 828  TVLEYIDTAATDLSSEVLSITHRAL--RMSPLPDVPPSELATSLEQVLHSDLGPLAPGMT 885

Query: 837  MTTAMSCDSYSEVSVSGKIN------------------------------------CPKK 860
            +      D  +E++    +                                      P  
Sbjct: 886  LADFSPADRLAEMNFELAMAQSGRSTTMTDLASLLCDPSLVPPDDPISGYGEILAHIPNG 945

Query: 861  DIIISGR----IDQISISQQNI-FIFEYKTHHHVPQE-------------IEHIPYTHIA 902
            D  + G     ID +         + +YKT+                          +  
Sbjct: 946  DQALRGFLTGSIDAVLRRPDGRHLVVDYKTNRIPGVHKLSPHMYDAHTMRAMMFSSHYPL 1005

Query: 903  QLSIYEKILKD 913
            Q  +Y   L  
Sbjct: 1006 QGLLYSAALHR 1016


>gi|302340231|ref|YP_003805437.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637416|gb|ADK82843.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 728

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 103/752 (13%), Positives = 207/752 (27%), Gaps = 147/752 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   +       +   + + +                L         E+  +
Sbjct: 69  AAGEMRQRVAAMVPDGAKVMIRTFHSFGAWLCRRHAK-----LLDLDPNFTIYDDEDSLT 123

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL +    ++   ++ +           L  + K          +  +    F       
Sbjct: 124 LLHAL---EEGKKRRELAP------YAHLISRAKDYALSPDDELESLSRDPDFPR----- 169

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                L   YEE  ++   +DF DLI+    LL+       +R +       IL+DE QD
Sbjct: 170 -----LYHSYEERLREMGNVDFGDLILLPVRLLQGFPE---VRDRFHGRFRVILVDEYQD 221

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           +++ Q+ ++R L                +  VGD+ QSIY F GAE K ++         
Sbjct: 222 SNVAQYHLLRELAGPDTA----------VCVVGDDDQSIYRFRGAEVKNIVTFPDTFP-- 269

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST  IL    +V S   +  G +   T          G+   
Sbjct: 270 ------GTKVIRLEENYRSTGRILQAASEVVSNNRSRLGKTLRPT---------KGEGVK 314

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V+L        +                              A   + ++          
Sbjct: 315 VRLCFLSDQNDE------------------------------AEYCAGLLSDG------- 337

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  D  +L R    +               I           +   IKD +AL   
Sbjct: 338 ----NLNDTAILYRTNAQSAAFET----CFLRRGIPYKVVGALRFYEREEIKDALALLAL 389

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------VYEYIQKFANCGISKF 481
           + + +D+++F  ++  P        + K+C       +        +     +  G    
Sbjct: 390 LQNPKDEVAFRRIVNKPTRGIGSKSVAKLCDHGGRFCSGDLLAACAQADTLLSGKGARGA 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFT 536
                 + E+  + +           L        +  R  +E       + L + +   
Sbjct: 450 GEFFAVMEEIGRLVEHSDLAQALQEALSLSGLLDYYYHRMQDEIAMSQKSENLQQLVAAA 509

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                +    L   + +LE     +     ++ N V ++T+H  KGLE   V +      
Sbjct: 510 AEY-PSGREGLSAFLEDLELDRSRLGGQDPSDENGVTLITMHNTKGLEFDRVIITGMEEG 568

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F                                          +   EE  R+ YV +T
Sbjct: 569 LFPG-----------------------------------RGADDEDELEEERRIFYVSIT 593

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWS 715
           RA  +L +      +   ++  R     + +      E  +  +  ++ +        W 
Sbjct: 594 RARYELYLTGCRRRTIWGRTEMRLPSRFLRELPKEVIEEERGFENLSAASGALSTRDYWL 653

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                 +  E  E ++                
Sbjct: 654 ETASFGSGTEHGEDVEDYQGFPPGTMVYHDDY 685


>gi|29346464|ref|NP_809967.1| ATP-dependent helicase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338360|gb|AAO76161.1| ATP-dependent helicase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1057

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 119/866 (13%), Positives = 257/866 (29%), Gaps = 106/866 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            K+  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KHWATKTSPRFADIIDLAKSSLMQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +    N       L+ +TN LL +      S+++  KI   I +++IDE QDTS +
Sbjct: 345  EEVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIRNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +       +      
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLNDRIEHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +++   +++F+   N                 +      V   
Sbjct: 451  --PIKVKTLATNRRSETNVIRFNNQIFTAAVNYLNEVYKKQLGKDCDDLQKAYADVV--- 505

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                 Q   +   +     ++ +              +   + +++ +           +
Sbjct: 506  -----QESPRSVQKGYVKATFLEPDEAHDYTDQTLISLGEEVEHLLSSG----------V 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  DI +LVRK K  P I         +    +V ++ F L   LAI  ++   RF+  +
Sbjct: 551  RLNDIAILVRKNKSIPRIADYF---DKELHYKIVSDEAFRLDASLAICMMIDALRFLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  ++   EL
Sbjct: 608  SNKIA-------------RAQLAIAYQNEVLQKNLDWNTLLLLPIENYLPPAFLEKQKEL 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      E    L  F +      Q++ S L   I
Sbjct: 655  R----LMPLYELLEELFSI------FKMSHIEEQDAYLFAFFDAVTDYLQSNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               ++   +           +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RYWDETLCSKTIPSGEVEG-IRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQ 763

Query: 612  L--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +   I      ++   +I  +     +     +   LLYV  TRA   LII     
Sbjct: 764  EAPFNAMDILPINYSTQMAESIYGNDYLLERLQLWVDNLNLLYVAFTRAGKNLIIWSKKG 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      D      +       +                   EE 
Sbjct: 824  QKGTMSELLANTLPVVALKEGLDWEEDCYEQGELCPSE-------------------EEK 864

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
             K   ++              +        S         +E   SD++  +RG ++H L
Sbjct: 865  AKTSTNKLTQKPDKLPVHMESMRHEIEFRQSNRSADFIQGIEEEESDDRFIHRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
               I T         I         +  +++ + +     +   +P +    S   ++ +
Sbjct: 925  FSAIET--AEDIDPAIERLI-FEGVIASSEKAEEIREVARKAFSSPEIQNWYS-GEWT-L 979

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                 I   +K ++ + R D++ +    + + ++K      Q        +  Q+  Y +
Sbjct: 980  FNECAIIYKEKGVLQTRRPDRVMMKDGQVVVVDFKFGKENLQ--------YNKQVKGYMQ 1031

Query: 910  ILKDSYPNKSLVCLLIYVSEPKVFII 935
            +L      K++   L YV E  +  +
Sbjct: 1032 LLTKM-GYKNITGYLWYVDEELIVKV 1056


>gi|160886083|ref|ZP_02067086.1| hypothetical protein BACOVA_04090 [Bacteroides ovatus ATCC 8483]
 gi|156108896|gb|EDO10641.1| hypothetical protein BACOVA_04090 [Bacteroides ovatus ATCC 8483]
          Length = 1056

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 124/864 (14%), Positives = 262/864 (30%), Gaps = 108/864 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            KN  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KNWATKTSPRYADIINLANSSLMQILEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +    N       L+ +TN LL +      S+++  KI   I++++IDE QDTS +
Sbjct: 345  EEVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIHNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +       +      
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNSLNNHIEHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +++   +++F+   N                 +          
Sbjct: 451  --PIRVKTLATNRRSETNVIRFNNQIFTAAANYLNGVYKQQLGKDCEDLQKAYA------ 502

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
               V Q   +   +     S+ +   +          +   + +++ +           +
Sbjct: 503  --DVLQESPRSTEKGYVKVSFLEPDEEHGYTEQTLISLGEEVQHLLTSG----------V 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  DI +LVRK K  P I         +    VV ++ F L   LAI  ++   RF+  +
Sbjct: 551  RLNDIAILVRKNKSIPRIADYF---DKELHYKVVSDEAFRLDASLAICMMLDALRFLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  ++   EL
Sbjct: 608  NNKIA-------------RAQLAVAYQNEVLQKGLDWNTLLLLPAENYLPAAFLEKTKEL 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      +    L  F +      Q++ S L   I
Sbjct: 655  R----LMPLYELLEELFSI------FEMNLIKDQDAYLFAFFDAVTDYLQSNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               ++   +           +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RYWDETLCSKTIPSGEVEG-IRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQ 763

Query: 612  --LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +   I      ++   +I  +     +     +   LLYV  TRA   LII    +
Sbjct: 764  TAPFNTLDILPINYSTQMAESIYGNDYLQERLQLWVDNLNLLYVAFTRAGKNLIIWSRKS 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      D      +     + +                   +E 
Sbjct: 824  QKGTMSELLANTLPIVAQEEGIDWEEDCYEQGQLCSSE-------------------KER 864

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            IK   ++     +        +        S         +E   SD++  NRG ++H L
Sbjct: 865  IKTSTNKLTQKPEKLPIRMESMRHDIEFRQSNRSADFIQGIEEEDSDDRFINRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSE 848
              VI           I         +    E + +   +  +   +P +    S   ++ 
Sbjct: 925  FSVIE--TAEDIDPAIERLI--FEGVIRNDEKEKVAREVAKKAFSSPEIQDWYS-GKWT- 978

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            +     I   +K ++ + R D++ +    + + ++K     P         +  Q+  Y 
Sbjct: 979  LFNECAIIYKEKGVLQTRRPDRVMMKDDQVVVVDFKFGKENP--------KYNKQVKGYM 1030

Query: 909  KILKDSYPNKSLVCLLIYVSEPKV 932
            ++L      K++   L YV E K+
Sbjct: 1031 QLLTKM-GYKNITGYLWYVDEEKI 1053


>gi|320449643|ref|YP_004201739.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
 gi|320149812|gb|ADW21190.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
          Length = 708

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 113/721 (15%), Positives = 219/721 (30%), Gaps = 141/721 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + +       VS  +      +      +      L+        +++ +
Sbjct: 73  AAEEMRERLKRMVKGGGELWVSTFHSAALRILRVYGERV-----GLKPGFVVYDEDDQTA 127

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L+    L +     +    + +  ++ +  E  +    E        +  ++        
Sbjct: 128 LIKEV-LKELGLAARPGPLKALLDRAKNRGEAPESLLSELPDYYAGLSRGRLL------- 179

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   YEEA K    LDF D+++    LL++      +  ++ +    I +DE QD
Sbjct: 180 ----DVLKRYEEALKAQGALDFGDILLYALRLLEEDPE---VLKRVRRRARFIHVDEYQD 232

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+   + L  +             L AVGD  Q IYSF  A+ K +L   R     
Sbjct: 233 TNPVQYRFTKLLAGE----------EANLMAVGDPDQGIYSFRAADIKNILEFTRDFP-- 280

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +  L  ++RST  IL   + +          +                   
Sbjct: 281 ------GAKVYRLEENYRSTEAILRFANALIVNNALRLEKTLRPVKP------------- 321

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            +        D+  +       AR +A  I  +           
Sbjct: 322 ---------------GGEPVRLYRARDARDE-------ARFVAEEILRL----------- 348

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                   + VL R    + L+            +           +   +KDL+A  R 
Sbjct: 349 --GPPFDRVAVLYRTNAQSRLLEQTL----ASRGVPARVVGGVGFFERAEVKDLLAYARL 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN--CGISKFQHV 484
            L+  D +S   +L +P        + K+    R +   ++E ++  A      +  +H 
Sbjct: 403 SLNPLDGVSLKRVLNTPPRGIGPATVEKVEALAREKGLPLFEALRVAAEVLPRPAPLRHF 462

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQ 541
           +  + EL  +A F     FF  +L A                + ++ ++E L      E 
Sbjct: 463 LALMEELQELA-FGPAEGFFRHLLEATDYPAYLREAYPEDYEDRLENVEELLRAAKEAE- 520

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                   L+  L++   T +         +V +MT+H AKGLE PVVF+V     +  H
Sbjct: 521 -------GLMEFLDKVALTARAEEPGEPAGKVALMTLHNAKGLEFPVVFVVGVEEGLLPH 573

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                           EE  RL YVG+TRA +
Sbjct: 574 RSSLSTL----------------------------------EGLEEERRLFYVGVTRAQE 599

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +L +          ++        + +      E     + +  ++         ++   
Sbjct: 600 RLYLSYAEEREVYGRTEATRPSRFLEEVEGGLYEEYDPYRASAKVSPSPAPGEARASKPG 659

Query: 720 E 720
            
Sbjct: 660 A 660


>gi|187736051|ref|YP_001878163.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
 gi|187426103|gb|ACD05382.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
          Length = 1054

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 129/853 (15%), Positives = 261/853 (30%), Gaps = 108/853 (12%)

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
            + +     ++    + +E I+   R  T    + T A+  L       Y    +      
Sbjct: 303  VEEAREKFRDFWTPALEELIQSWLRMETLHTLRRTRATHGLMLLFENKYSSLVRNRGRFL 362

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F D+           ++   ++Y++    +H ++DE QDTS  QW VI+   +D    ++
Sbjct: 363  FHDVTRMLGGGTMTPELKRDLQYRMYCRYDHWMLDEFQDTSQPQWHVIKPFLDDL--AES 420

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
               +  ++F VGD KQS+Y + G +P+         Q              +  S+RS  
Sbjct: 421  KTGNEGSIFVVGDIKQSVYQWRGGDPELFRSVSSQLQ---------LEQRGMSTSYRSVQ 471

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
             +L +V+ +      A G    +        +                  + +    Q  
Sbjct: 472  PVLDLVNDICDYARTAPGCEPAALEQWGEYPAHRCAP-----------HLEDRPGTSQIW 520

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                 +++         A  I      +                  +  +LV  +    +
Sbjct: 521  QAPKAENVSANDQVCQAAADILERTGALRRG--------------LETAILVSTKNQALV 566

Query: 389  ITFLTRFLKNDYKISVVGNDRFILT-DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            I         D+ I     D   +  D    K+L+   R++L   D      +  SPL  
Sbjct: 567  IKGWL----TDHGIPAEVCDDVPVGVDSPLGKNLLYFFRWLLMPGDPFVVGLLTHSPLRP 622

Query: 448  FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
                    I     E+    E+                     L+    + +  +     
Sbjct: 623  L-------ITQGGPESMGWKEW-------------------RLLLERDGYAAVMEELEQR 656

Query: 508  LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
            L          +   +   D L  + N   + ++    SL E I  +E     + R    
Sbjct: 657  LLRGG------TELTDFHRDRLAVWQNEAEQVDEQGV-SLDEWIRRME----DLTRREDP 705

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTG-SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                VRIMT+H +KGL   +V L   G    F+        I  +        +  P   
Sbjct: 706  AAGIVRIMTIHKSKGLGFDIVILPQIGRDTPFADGRHLTHFIKKNGEGGVEGIVLAPSRH 765

Query: 627  --SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                     +L    +   Q +    LYV +TRA     +        E+      W  +
Sbjct: 766  VYMNIPQFRELYGEWRARQQFDGFCKLYVALTRAKRATYVILPYREDKEETEADSMWKVV 825

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                   +   + I   +  +       +              E+I++  ++  +     
Sbjct: 826  RSSIRPLNRGTEDILPESGASCLYSRGLDGWYEEF-------PESIQKRAEKNALEWPPQ 878

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
             P+  +   P  L+      +G+ +  +  +          +H + + I    +  +  +
Sbjct: 879  KPLARERISPSGLSEEASPLQGEKHAGAGKAAALGSA----VHAVFERITRWDDENKPAW 934

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                        PA E + ++     +   P +    +    + +    +I     +  I
Sbjct: 935  ALH---------PATEAERIVAECMEI---PSIRELFTPPETARIMKEQRIEAIDGNNWI 982

Query: 865  SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVC 922
            SG ID++ +      I ++KT H      E +   H  QL+ Y +I+      P + +  
Sbjct: 983  SGIIDRLILDGDGARIVDFKTDH--ADTPEQLREHHANQLNAYARIVSRITGIPLERITR 1040

Query: 923  LLIYVSEPKVFII 935
             ++     +   I
Sbjct: 1041 TIVSTCLKETVPI 1053


>gi|296158754|ref|ZP_06841583.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. Ch1-1]
 gi|295890959|gb|EFG70748.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. Ch1-1]
          Length = 1230

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 128/990 (12%), Positives = 286/990 (28%), Gaps = 134/990 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK---KAQTLQQASQTQCIEERF 66
                +  +     L + +   I   ++ + E  + T  K    +  +   ++     +  
Sbjct: 228  GADPQAGFDAACELWHAERDTIVSLLAEAQERLSKTSHKPDHVSGAIAAWTEYFAQGDCH 287

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            +      L    +  K     +         E   ++    +   +     +      A 
Sbjct: 288  APPPKAALKLTASALKKATKVKFEPPVHPFFEH-AEALAAAVVAAEAAQRARWLSLVQAW 346

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            L  A    A     K+   V+ F+DL+ N    L       W+   +       LIDE Q
Sbjct: 347  LDYAP---AELVARKRTRRVVSFDDLLSNLYRALAAHP---WLADALRARYPAALIDEFQ 400

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +Q+ +   +                LF VGD KQ+IYSF  A+    L  +     
Sbjct: 401  DTDPLQFAIFSRIFA----------PAGPLFLVGDPKQAIYSFRAADLHTYLAARE---- 446

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +   L ++ RSTA I+   +++F     A  L       +R    R     
Sbjct: 447  ------AASACYTLAVNQRSTAPIVEACNRLFEANPQAFVLDGLDYQPVRAGERRR---- 496

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-FSN 365
                         S  + +  +      +L +  +    +   A  I  ++         
Sbjct: 497  -----PPFSDPQASAGDFRIWTLPQGDAALNKREAQREASEACAAEIVRLLRGAREGMVT 551

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +   +I VLV+  K   LI  +       + +  V   +  +   L  + +  + 
Sbjct: 552  IGDAPLAPGNIAVLVQTHKQGSLIKRVLAA----WGVGSVELAQASVFATLDAEQIERVL 607

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
              + +  D       L +         ++++           +        G       +
Sbjct: 608  AAVDTPGDLRRLRAALATDWLGLDAAALWRLEQVADAPSPADDPAHAADAMGW------V 661

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQ 541
            +       +         +  ++   +  Q+ ++    E      + L E +      + 
Sbjct: 662  ERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAGPDGERRLTNVNHLAELVQARAATQP 721

Query: 542  NSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                +L+ L ++  Q      +    ++ N V+I+TVH +KGLE  VVF           
Sbjct: 722  GIAPTLRWLAAQRTQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGALRE 781

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                 +      +D+ G  +        +       ++  +    E  RL+YV +TRA  
Sbjct: 782  PPSSGLPDAREYHDETGTAVLHYGC--DDEEAEHASRYAVREQAAERARLVYVALTRAVY 839

Query: 661  QLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY------ 712
            +  +    + ++ + ++S +     +V  S H+ +         +     W A       
Sbjct: 840  RCYLVAGTYQSSRSTRESRRSVLNWLVGGSGHSFDDWLAEPPDEAALSARWQALAGGSIT 899

Query: 713  -----EWSTHHPENTPLEREETIKQLMDEQKIPKKLF----------------------- 744
                       P  +  +R   ++   + + +  +                         
Sbjct: 900  LQPLPRPERRVPLESLQDRSAHMQARANRRPLRDQWRMASFSGLIAAGSKADEAHAPVEE 959

Query: 745  -SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
              P  ++I +  ++ P           + +L+  +    G  +H++ ++          +
Sbjct: 960  VRPDHDEIADALVVTPVPAPHPQAHAEDDVLAFPRGAAAGDCLHRMFELADFTAPPTWTD 1019

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLEN---------------------PMMTTAMS 842
             I     +       +    L   +  LL +                       +    +
Sbjct: 1020 AIRGALRERPAPAAPELAARLPAMMHNLLRDVVATELQPGMRLANLDPRRRLNELEFLFA 1079

Query: 843  CDSY-----SEVSVS-----GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
              S       E+ +        +        + G ID I       +I ++K++H     
Sbjct: 1080 APSLDFPALRELLIEHGYPDVALEPGVLRGFVKGFIDMIVEHDGRFWIVDWKSNHLGDTA 1139

Query: 893  IE---------HIPYTHIAQLSIYEKILKD 913
             +            + +  Q  +Y   L  
Sbjct: 1140 ADYAAAPLEAAMASHAYHLQALLYTVALHR 1169


>gi|288921364|ref|ZP_06415644.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288347216|gb|EFC81513.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 1138

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 128/1047 (12%), Positives = 270/1047 (25%), Gaps = 201/1047 (19%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R GL  + +  L+    + L    V      V     + +  +        + S+     
Sbjct: 168  RLGLEPD-TRMLVAAARYQLAARVVRTHGGRVEALTRSISALVADLVALDGEMSEHLVAA 226

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            +      +            +        +  L+++L++                    T
Sbjct: 227  DDLMAFDAALF---GQALAALADAARRPGTKTLRKELRRIAA-----------------T 266

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                     L A Y  A++   VLDF D +     L  +      +          +L+D
Sbjct: 267  ARGRRELAALVADYRVARRARDVLDFGDQVTFAARLAGRYPE---VAAAERGRAGVVLLD 323

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS+ Q  ++  L            +   + AVGD  Q+IY + GA    +      
Sbjct: 324  EYQDTSVAQRTMLAGLFG----------AGHPVTAVGDPCQAIYGWRGASVANLDNFPEH 373

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              +     G   +   L ++ RS   +L + + V +       +                
Sbjct: 374  FPR---ADGTPAARYRLSVNQRSGGRLLALANDVAAPLRARHHV---------------- 414

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                V+L  +       +              +    S +     +A  ++ ++      
Sbjct: 415  ----VELRPRADVVAAGRT------------LVALHESWAQEVAWVAERLAELVAAGE-- 456

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                    +   + VLVR R D   +            + V       L D   I D++ 
Sbjct: 457  --------RPGSMAVLVRARSDVRALHTALTA----AGLPVEVVGLAGLLDLPEIADVVT 504

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------------------ 465
            +   + S   + + V +L  P       D+  +  +  +  +                  
Sbjct: 505  VLEVLESPIANAALVRLLTGPRLRLGPRDLAALGRRARQLLSADTARDGAAAAASGPAAA 564

Query: 466  --VYEYIQKFANCGISKFQHVI------------KYIHELIHIAQFCSPH------DFFT 505
              + E +     C +      +            + + EL         H      D   
Sbjct: 565  DPLAEAVAGIDPCDVVALADALTDPGPEISAAGRERVIELGAELAALRVHVGDGLLDLLH 624

Query: 506  LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN----SYSSLQELISELEQYPPTI 561
             ++       +  +          +    F             +SL   ++ L       
Sbjct: 625  RVIATIGLDVEISASPKAVAARRRENLAAFLDAAADFDDPDGPNSLASFLAYLRAAREHE 684

Query: 562  KRAH---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLN 613
            +       +  + V +MTVH AKGLE  VV + D    VF    ++        ++P+  
Sbjct: 685  RGLDITGPSGADAVALMTVHRAKGLEWEVVAVPDLSRGVFPDLTVRDRWTTSTGVLPTPL 744

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                  +           ++      +   + E  RL YV  TRA   L+   H     +
Sbjct: 745  RGDAAELPAYAVSDSKAELATFTDDCRAYQEREERRLAYVAFTRAKSVLLGSGHWWGPTQ 804

Query: 674  KKSNQRTWY--DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP------------ 719
            +     + +  ++   +     +V       +  ++  +A       P            
Sbjct: 805  RTRRGPSVFLTELREHAAAGHGQVAVWAPEPAPGRNPDLAVPAEFSWPMPYEPVAYARRR 864

Query: 720  -----------------------------------ENTPLEREETIKQLMDEQKIPKKLF 744
                                                    E    + +    +   + + 
Sbjct: 865  EAAAAVEQAFALLGAGQAPPVDELAGMTARERALLAELDREAALLLAEERSARAPFRDVA 924

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
             P     ++   L     +   +              RG   H  ++ +F        + 
Sbjct: 925  MPTSLTASDIVRLRADPAEFARELARPLPRRPVPQARRGTRFHTWVEELFDQRPLIDLDD 984

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
            +                 +L       L  P              ++            +
Sbjct: 985  VVDAAGAEGAAGQRLTGPDLAALQDAFLAGPYGA-------RRPFALETPFEVMIGGRAV 1037

Query: 865  SGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK--SLV 921
             GRID +  +      + ++KT                 QL++Y              + 
Sbjct: 1038 RGRIDAVYDLGGGRWEVVDWKTGSEPADP---------VQLAVYRVAWAKVRGVAVPDVD 1088

Query: 922  CLLIYVSEPKVFIIPQNKLNKAFAEIS 948
                YV+  +V   P    ++  A ++
Sbjct: 1089 AAYFYVASGQVVRPPLLSEDEIVALLA 1115


>gi|307546980|ref|YP_003899459.1| ATP-dependent DNA helicase Rep [Halomonas elongata DSM 2581]
 gi|307219004|emb|CBV44274.1| ATP-dependent DNA helicase Rep [Halomonas elongata DSM 2581]
          Length = 685

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 101/669 (15%), Positives = 210/669 (31%), Gaps = 129/669 (19%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LA 130
           F        K ++   +NK +    +++ + Q      ++         S  A      A
Sbjct: 114 FSLFDPEDAKALLRDLMNKDAQVDADQINRVQSVISNWKNDLVLPGQALSHAADEDELFA 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y    K    +DF+DLI+    LL+    +     +  ++I+++L+DE QDT++
Sbjct: 174 ARVYEAYVRHLKAYNAVDFDDLILLPVTLLRDDPEA---LARWRRKIHYMLVDEYQDTNV 230

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q++++R L  +            T   VGD+ QSIY++ GA P+ ++       +    
Sbjct: 231 SQYQLVRMLMGE----------RATFTVVGDDDQSIYAWRGARPENLVTLGEDFPR---- 276

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++I+L  ++RST  IL   + + S   +    +                     L
Sbjct: 277 ----LNVIKLEQNYRSTGTILRAANTLISNNPHVYEKT---------------------L 311

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W  +      +                        A R+A  I          +   K  
Sbjct: 312 WSDMGQGEAIRVV--------------VNRHEEAEAERVASEI---------LTRRIKER 348

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + +D  VL R      L+    +     Y+I    +          IKD MA  R +++
Sbjct: 349 AEWRDFAVLYRGNFQARLLELKLQ----HYQIPYKLSGGTSFFSRNEIKDAMAYLRLLIN 404

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQH 483
             DD +F+ ++  P        + K+         +++    +           + +   
Sbjct: 405 PADDNAFLRIVNVPRREIGPGTLEKLANYATERGASLFAACHELGLAEQLPARAVERLGR 464

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLR 538
              +I  +               +L                      +  +   ++   +
Sbjct: 465 FTHFIDGVRRRMDGGDAIAAIRGMLHEMDYEAWLYQNASAPTIAERRMANVWTLVDQLEK 524

Query: 539 NEQNSY-----------SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           + +                ++  IS L       ++A   + + V+++T+H +KGLE P 
Sbjct: 525 SMRADPDEESPSTDTETDDVEAAISRLVLRDILEQQAEEDDSDRVQLLTMHASKGLEFPH 584

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V+L+    ++  H                                      ++  + EE 
Sbjct: 585 VYLMGLEEELLPH-----------------------------------RNAIETGSVEEE 609

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YVG+TRA   L +          +    T    + +   +    +        +K 
Sbjct: 610 RRLAYVGITRARRTLTLTLARQRKAYGEMMDCTPSRFLDELPEDALEWEGRADREDPDKK 669

Query: 708 EWIAYEWST 716
           +    +   
Sbjct: 670 QARGQDAIA 678


>gi|325923760|ref|ZP_08185377.1| ATP-dependent DNA helicase Rep [Xanthomonas gardneri ATCC 19865]
 gi|325545758|gb|EGD16995.1| ATP-dependent DNA helicase Rep [Xanthomonas gardneri ATCC 19865]
          Length = 658

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 105/723 (14%), Positives = 225/723 (31%), Gaps = 146/723 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +      +   I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRI-RGDGAEGLTICTFHALGLK--FLQIEHAAAGLKRGFSIFDSDDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMHGAKPDAIEDAKNLISRAKNAGMSPEQAMAAARSNREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L   Y+        +DF+DLI     +L+  +    I     + I ++L+DE QD
Sbjct: 162 --AASLYERYQARLTTFNAVDFDDLIRLPVQILEGNEE---IVMGWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLQQMGRDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  IS +         G 
Sbjct: 310 IRVW--------------------------ECRDSEHEAEKVAAEISFL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    + L+    +           +   +KD+++  R 
Sbjct: 335 AKQVPWSDFCILFRGNFQSRPLEKALQLLR----VPYHLTGGTAFLERQEVKDVLSWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISK 480
           I++ EDD +F+  ++SP        + ++                    +Q       + 
Sbjct: 391 IVNPEDDAAFLRAVQSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + ++   +      +    +           ++  +E         LDE    
Sbjct: 451 LSAFTDILRDMREHSAAMPAGELVRTLAEKSGLLNDLRNQSKDETGFQRRKRNLDEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     +S  +L ++L       +       N+VR+MT+H +KGLE   VF+V   
Sbjct: 508 AEWFEGGPRGASASDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                      ++   +E  RLLYVG
Sbjct: 565 DGVLPHEVSL-----------------------------------EEGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA +QL +             +     ++D +       +    +       +     
Sbjct: 590 ITRAKEQLWMSHSKLTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASAG 649

Query: 712 YEW 714
              
Sbjct: 650 LAA 652


>gi|298387758|ref|ZP_06997309.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. 1_1_14]
 gi|298259614|gb|EFI02487.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. 1_1_14]
          Length = 1057

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 119/866 (13%), Positives = 257/866 (29%), Gaps = 106/866 (12%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------LTLAKYLN 134
            K+  T+   + +  +                  +   +  ++          + L   ++
Sbjct: 285  KHWATKTSPRFADIIDLAKSSLMQMLEDAEKLRSKNNLLLNSCRLSLQHLNKVQLLANID 344

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +    N       L+ +TN LL +      S+++  KI   I +++IDE QDTS +
Sbjct: 345  EEVRQLNHDNNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIRNVMIDEFQDTSRM 400

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW   + L  +                VGD KQSIY +   +   +       +      
Sbjct: 401  QWGNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLNDRIEHF---- 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  + RS  +++   +++F+   N                 +      V   
Sbjct: 451  --PIKVKTLATNRRSETNVIRFNNQIFTAAVNYLNEVYKKQLGKDCDDLQKAYADVV--- 505

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                 Q   +   +     ++ +              +   + +++ +           +
Sbjct: 506  -----QESPRSVQKGYVKATFLEPDEAHDYTDQTLISLGEEVEHLLSSG----------V 550

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  DI +LVRK K  P I         +    +V ++ F L   LAI  ++   RF+  +
Sbjct: 551  RLNDIAILVRKNKSIPRIADYF---DKELHYKIVSDEAFRLDASLAICMMIDALRFLSDE 607

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             + ++                +          + +                  ++   EL
Sbjct: 608  SNKIA-------------RAQLAIAYQNEVLQKNLDWNTLLLLPIENYLPPAFLEKQKEL 654

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                     ++    +         F      E    L  F +      Q++ S L   I
Sbjct: 655  R----LMPLYELLEELFSI------FEMSHIEEQDAYLFAFFDAVTDYLQSNSSELDGFI 704

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               ++   +           +RI ++H +KGLE   V L     ++ +  + + +   P 
Sbjct: 705  RYWDETLCSKTIPSGEVEG-IRIFSIHKSKGLEFHTVLLPFCDWKLENETNNQLVWCAPQ 763

Query: 612  L--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +   I      ++   +I  +     +     +   LLYV  TRA   LII     
Sbjct: 764  EAPFNAMDILPINYSTQMAESIYGNDYLLERLQLWVDNLNLLYVAFTRAGKNLIIWSKKG 823

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                          +V      D      +       +                   EE 
Sbjct: 824  QKGTMSELLANTLPVVALKEGLDWEEDCYEQGELCPSE-------------------EEK 864

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
             K   ++              +        S         +E   SD++  +RG ++H L
Sbjct: 865  AKTSTNKLTQKPDKLPVHMESMRHEIEFRQSNRSADFIQGIEEEESDDRFIHRGRMLHTL 924

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
               I T         I         +  +++ + +     +   +P +    S   ++ +
Sbjct: 925  FSAIET--AEDIDPAIERLI-FEGVIASSEKAEEIREVARKAFSSPEIQNWYS-GEWT-L 979

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                 I   +K ++ + R D++ +    + + ++K      Q        +  Q+  Y +
Sbjct: 980  FNECAIIYKEKGVLQTRRPDRVMMKDGQVVVVDFKFGKENLQ--------YNKQVKGYMQ 1031

Query: 910  ILKDSYPNKSLVCLLIYVSEPKVFII 935
            +L      K++   L YV E  +  +
Sbjct: 1032 LLTKM-GYKNITGYLWYVDEELIVKV 1056


>gi|331002011|ref|ZP_08325531.1| hypothetical protein HMPREF0491_00393 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411807|gb|EGG91212.1| hypothetical protein HMPREF0491_00393 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 613

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 104/563 (18%), Positives = 184/563 (32%), Gaps = 120/563 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + K +   YE   +    LDFED++  T +LL +      I   +     +IL+DE QD
Sbjct: 159 DVFKKIYREYEAELETLNKLDFEDMLSLTYELLSE---REDILKAVQNRYRYILVDEFQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q+ +I+ +              + +  VGD+ QSIY F GA P+ +L  +R  +  
Sbjct: 216 INFLQYNIIKLMAG----------KDQNITVVGDDDQSIYRFRGARPEIMLGFERDFKN- 264

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   S + L ++FRS+  I+    K+ S        S  +           G    
Sbjct: 265 -------VSKVFLDINFRSSTQIVDASTKLISFNSKRFPKSFRA---------HKGSGAP 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V + E      +                             I   I   I      +N  
Sbjct: 309 VSVIEFKNPFGEVSS--------------------------IVNDIKEYIRAKQDINN-- 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
                   I VL R          L         I     D    L +H   KD+++  R
Sbjct: 341 --------IAVLYRTNLSPR----LLIERMMKNNIPFTIRDSIPNLFEHWVAKDIISYIR 388

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             L+  +    + +   P    S D +    + +   ET+++Y    +       + +I+
Sbjct: 389 LALNTGNKTDLLRISNKPNRYISRDSL---SSSKANIETLFDYYDDKSYM----IKRIIE 441

Query: 487 YIHELIHIAQFCSPHDF--FTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQ 541
               L  I              ++G  +  +++    G E  D   +L +  N       
Sbjct: 442 LREHLRTIKNLRPATALRYIRNVVGYDEYIEEYCDMNGIESDDCYTILGDLENSASEF-- 499

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           N+++     + E +      ++  + N   VR+MT H++KGLE  +V+++D         
Sbjct: 500 NTFNDWFIHMEEYKNELIEARKKSNENDTGVRLMTFHSSKGLEFDIVYIIDVNEGSVP-- 557

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                              K       EE  R+ YV MTRA ++
Sbjct: 558 ---------------------------------YKKAKGAEEIEEERRMFYVAMTRARNK 584

Query: 662 LIICKHSNTSNEKKSNQRTWYDM 684
           L IC       +         ++
Sbjct: 585 LFICYCKENFGKSIGKSDFIIEL 607


>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040629|gb|ACT57425.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
          Length = 685

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 98/553 (17%), Positives = 180/553 (32%), Gaps = 118/553 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K +   Y    +K    DF  LII T ++L        +  K  ++I +I++DE QD + 
Sbjct: 191 KAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPH----VLKKYHEKIPYIMVDEYQDINT 246

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+ ++R L +     +        +  VGDE Q IY + GA+   +L  ++        
Sbjct: 247 PQYLLLRLLCQKEDSKQGAR-----ICCVGDENQCIYEWRGAQFSHILNFQKDF------ 295

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +  +II+L  ++RST  IL   +K+ S  +        +                   
Sbjct: 296 --KDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQR----------------- 336

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                   D   + +     S  D+                    +        N +   
Sbjct: 337 --------DCHDDAKVSIHVSQSDNS------------------ELSTIIQEIINIQNTG 370

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +   +I +LVR    T            + +I           D   I+D +A  R +  
Sbjct: 371 MSLNNIAILVRTSWQTRKFEDAF----LEQEIPHKVIGG-SFYDRQEIRDALAYFRLVCQ 425

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA------NCGISKFQH 483
           +  D  F  ++  P     ++ + KI         ++ +  +K               Q+
Sbjct: 426 EHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQN 485

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRN 539
            +K I    + ++   P     +IL        + +        E +D L E L+   ++
Sbjct: 486 FVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLRELLSIIEKH 545

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E     +L+  +  L+        +   + N ++IMT+H AKGLE   VF+      +  
Sbjct: 546 E-----TLEGFV--LQAPLRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLP 598

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       +   E   RL YVG+TRA 
Sbjct: 599 HQLSIN-----------------------------------EGNVEGERRLAYVGITRAK 623

Query: 660 DQLIICKHSNTSN 672
            +  +    N   
Sbjct: 624 KKCHLFYTINRRT 636


>gi|229521119|ref|ZP_04410540.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TM 11079-80]
 gi|229342004|gb|EEO07005.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TM 11079-80]
          Length = 671

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 221/664 (33%), Gaps = 135/664 (20%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRLLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +        M K       L  +    Y++  +    LDF+DLI+    LL+  +    +
Sbjct: 146 MLTPPQAKAMAKGEQQ--QLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKAL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S      +                                     +   ++    A R+
Sbjct: 303 FSELAEGEKL-----------------------------------KVILANNEDHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I          ++      + +D  +L R    + LI           ++    +  
Sbjct: 328 TAEI---------IAHKFLNRTEYRDYAILYRGNHQSRLIEKSL----TQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++ 
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFT 434

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               +   +++  +   A+  +  +    ++   +          
Sbjct: 435 ASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSA 494

Query: 520 --RFGNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEV 572
             +     +  + +  ++ + + +          L+E++  L       +   + + + V
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V+L+     +  H+                               
Sbjct: 555 QLMTLHASKGLEFPYVYLIGAEEGILPHQTSID--------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +   EE  RL+YVG+TRA  +L            +  + T    + +    D
Sbjct: 588 --------EENVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQED 639

Query: 693 ERVK 696
              +
Sbjct: 640 IEWE 643


>gi|209521655|ref|ZP_03270348.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160]
 gi|209497914|gb|EDZ98076.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160]
          Length = 1239

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 132/986 (13%), Positives = 279/986 (28%), Gaps = 134/986 (13%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             + +W      +  +       +          +  +   S      +  +      L  
Sbjct: 238  ARAIWQAERDAIVALLAEAQERLSKTTHKPDHVSAAIAAWSDYFAQGDCHAAPPRAALKL 297

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  K     +         E  +      +       + +      + L  A    A 
Sbjct: 298  TMSALKKATKVKFEPPVHPFFEHAEALAAAVVAAEAAQRS-RWLALVQSWLDYAP---AE 353

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
                K+   V+ F+DL+ N    L      AW+   +       LIDE QDT  +Q+ + 
Sbjct: 354  LVARKRTRRVVSFDDLLANLYRALAAH---AWLADALRSRYPAALIDEFQDTDPLQFAIF 410

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
              +                LF VGD KQ+IYSF  A+    L  +              +
Sbjct: 411  SRIFA----------PAGPLFLVGDPKQAIYSFRAADLHTYLAAR----------ESASA 450

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RSTA I+   ++VF     A  L       +R    R               
Sbjct: 451  CYTLAVNQRSTAPIVDACNRVFEANPQAFVLDGLDYQPVRAGERRRA---------PFAD 501

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-FSNGKKRVIQAKD 375
               S  + +  +      +L +  +    +   A  I  ++            + +   D
Sbjct: 502  PDASGGDFRIWTLPQGEAALSKRDAQRAASEACAAEIVRLLRGAREGVVTIGDKPLAPGD 561

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I VLV+  K   L+  +       + +  V   +  +   L  + +  +   I +  D  
Sbjct: 562  IAVLVQTHKQGSLVKRVLAA----WGVGSVELAQASVFATLDAEQIERVLAAIDTPGDLR 617

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                 L +         ++++         V E            +   ++       + 
Sbjct: 618  RLRAALATDWLGLDAAALWRLTQVADAPAAVDESTPALDPADAMGW---VERFSRYRMLW 674

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELI 551
                    +  ++   +  Q+ ++    E      + L E +      +     +L+ L 
Sbjct: 675  HERGFAVMWRTLMRELRVAQRLVAGADGERRLTNVNHLAELVQARAATQPGIAPTLRWLA 734

Query: 552  SELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            ++ EQ      +    ++ N V+I+TVH +KGLE  VVF                +    
Sbjct: 735  AQREQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPSSGLPDAR 794

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA--SDQLIICKHS 668
              +DD G  +                ++  +    E  RL+YV +TRA     L++  + 
Sbjct: 795  EYHDDSGEAVLHYGCDEEEA--DRASRYAVREQAAERARLVYVALTRAVYRCYLVVGTYQ 852

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
            ++ + K+S +     +V  S H  +         +     W A           P     
Sbjct: 853  SSRSTKESRRSVLNWLVGGSGHTFDAWLAEPPDEAALAASWHALAGGPITLRALPEVTRR 912

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL--------------- 773
               + + +Q +     +  +   ++  + + S +   G  + ++                
Sbjct: 913  VPLESLQDQGVHLHARANRRPLRDQWRMASFSGLIAAGGRSGDAQAHAPQEDVRPDHDEI 972

Query: 774  --------------------------LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                                      L+  +    G  +H++ ++          + I  
Sbjct: 973  ADALESTPLVAPVAVANAPAHADDDILAFPRGAAAGDCLHRMFELADFTDASTWPDAIRG 1032

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLLE----------------NPM-----MTTAMSCDSY 846
               +       +    L   + RL+                 +P      +    +  S 
Sbjct: 1033 ALRERPAPAAPELAARLPAMMHRLIAGVVSTELVPGMTLARLDPRRRLNELEFLFAAPSL 1092

Query: 847  -----SEVSVS-----GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE-- 894
                  E+ +        +        + G ID I       +I ++K++H         
Sbjct: 1093 DFPALRELLIEYGYPDVALEPGVLRGYVKGFIDMIVEHDGRFWIVDWKSNHLGDTAANYA 1152

Query: 895  -------HIPYTHIAQLSIYEKILKD 913
                      + +  Q  +Y   L  
Sbjct: 1153 AAPLEAAMASHAYHLQALLYTVALHR 1178


>gi|114047350|ref|YP_737900.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-7]
 gi|113888792|gb|ABI42843.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-7]
          Length = 1269

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 126/976 (12%), Positives = 284/976 (29%), Gaps = 150/976 (15%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
            P + +    L              +L +  L++    +  ++         D  E+L   
Sbjct: 262  PKLAEMFDQLDNFLAFGHGLPPLKVLEALSLSELKLNKGGVLPSASEAPLLDHMEQLAAL 321

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
             +                      +  + ++  + + K++  VL  +DL+      ++  
Sbjct: 322  INAIKPAF--------------LYSAKQGISERFAKQKQQKNVLTPDDLLTTLAAAMQAN 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR--------- 214
                 +   +       LIDE QDT  +Q+ +   + +          +           
Sbjct: 368  P--DTLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGIDTQDPAAEPKPRTDSKL 425

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +L  +GD KQ+IY+F GA+    +  +R  Q              L  ++RS+ +++  V
Sbjct: 426  SLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHY----------FLDTNYRSSRNLVMGV 475

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + +F+   +           ++   +       V+      +          +  +    
Sbjct: 476  NHLFAQHSDPFISQSIPFDPVK-TPASAAAKQLVEHAPNSAALR-------LKLLSEGET 527

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKR-VIQAKDILVLVRKRKDTPLITFLT 393
             L + S+   LA   A  I+ ++           +  + AKDI +LVR R +  ++    
Sbjct: 528  GLNKASARQTLAEDTAAEITRLLTQAVNGQCSTPKGPLIAKDIAILVRDRNEAAVMKTAL 587

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                +  +I  V   R  + + +  +++  + R + S +D+ +    L + L  +  + I
Sbjct: 588  ----SKRQIGAVFLSRDSVFETVEAREMALILRALASPKDERALRSALATALLGYRAEQI 643

Query: 454  FKICTQRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                    + + + E   +       +     ++   +    +A+        +     +
Sbjct: 644  HAFNQDEEQRQRLLEQFFELHQIWQKRGIMPALLSLANATQMVARRLHSPASTSTDQAEQ 703

Query: 512  KGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISEL--EQYPPTIKRAHS 566
                   +  G   +     L E L           + L     +L         +    
Sbjct: 704  DAEVHLEANNGERRLTDFRHLAELLQQKATEIDGMSALLNWYEQQLIDNTGTDEQQLRLE 763

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +  N V+I+T+H +KGLE PV F+        + + +  M    +  D     +W  +  
Sbjct: 764  SEQNLVQIVTIHKSKGLEYPVCFVPFVSLARDNRRRLTPMLYHRTNADGAQELVWDLEGT 823

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--- 683
                      +  K+ T  E  RLLYV +TR      +   +++   K   +   ++   
Sbjct: 824  DEG------WEQAKQETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKAGLKSQLHETAI 877

Query: 684  ----------------------MVYDSFHNDERVKKIKLTNSINK--------------- 706
                                  +V     +   +    + + I                 
Sbjct: 878  GYLLGITDTDCDFSRLQHAAKALVAGLESSQPAISIEVVADDIEANKLHTGGSDSHTLSA 937

Query: 707  ---DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP--ST 761
                      W                     + ++   L +   N   +P         
Sbjct: 938  RKVSRQYRTPWRVGSYSGLVKNAPHAKATPGADDEVNAVLGTDTANSAADPLWQEALLQE 997

Query: 762  IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFITSYCTKNAKLWPAK 819
                    L +  S  +  N G  +H +L++I     P    +    +            
Sbjct: 998  AADTQAQPLLNRFSFERGANAGSFMHLVLELIDFTQAPIDLPRELPKAMLQYGIAPEWQP 1057

Query: 820  EYKNLLLSITRL----------LENPM--MTTAMSCDSYSEVSVSGKIN----------- 856
              ++  L + +           L NP   +       +  E+     +N           
Sbjct: 1058 VLEDWYLEVLQAPLALMAQDNQLINPELCLAALAPQHTLVEMEFYLPLNRLKDTELNQLL 1117

Query: 857  ----------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------P 897
                        +   ++ G ID     Q   +I +YK++H       +           
Sbjct: 1118 RQFGYDTELQFDELQGMLKGFIDLTFEYQGKFYIADYKSNHLGDNIQAYHHSALKQAISD 1177

Query: 898  YTHIAQLSIYEKILKD 913
            + +  Q  +Y   L  
Sbjct: 1178 HRYDLQYILYSLALHR 1193


>gi|237753157|ref|ZP_04583637.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375424|gb|EEO25515.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 697

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 95/569 (16%), Positives = 187/569 (32%), Gaps = 122/569 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y+E   +  ++DF+DL++   +++++      I  ++ ++  +I++DE QDT+ 
Sbjct: 165 AKIYGKYQEFLLQKNMVDFDDLLLLPLEIMQEN---KEIAKEVSEKYQYIMVDEYQDTNH 221

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+ +++ L           S+ + L  VGD+ QSIYS+ GA  + +L+           
Sbjct: 222 LQYLLLKCLC----------STHQNLCVVGDDDQSIYSWRGANIQNILQFSEHF------ 265

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +   +I+L  ++RST  IL   + + +  +   G +  ST                  
Sbjct: 266 --KGAKVIKLQENYRSTHTILQAANALIAHNKQRLGKTLISTL----------------- 306

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                         ++       D L +        + I   I  ++ +           
Sbjct: 307 -----------GEGKKIEIFHSSDELEE-------VQNITKAIRKLLDS----------N 338

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L R    +  +        N  KI  V        +   IKD+++  R +++
Sbjct: 339 ISPKDIAILFRLNALSRSLEEGF----NRAKIPYVLVGAIRFYERSEIKDVLSYFRVLVN 394

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---------VYEYIQKFANCGISKF 481
            EDD S   ++  P     +  + K+     E  T                 +      F
Sbjct: 395 LEDDFSLARIINKPKRGIGKTTLDKVLRLAQEHNTSVYGLFAKDYSALKGAISKKAYESF 454

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNE 540
           Q     +  L    +  S  +F  +        +         + +  ++EF        
Sbjct: 455 QEFFSTMLGLQESLKHSSL-NFIDVFEEKIGLCEALSQSNDEIDRVSNIEEFYGVYREYI 513

Query: 541 QNSY-SSLQELISELEQYPPTIKRAHSANH---NEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           + +    L++ +++L                    V  M+VH++KGLE   VF++     
Sbjct: 514 KQNPLMELEDFLNDLALRSDQEDVEMRTESKGVEGVSCMSVHSSKGLEFEYVFIIGLEEG 573

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F                                         + S  EE  RL YV  T
Sbjct: 574 FFP-------------------------------------LVREDSNIEEERRLGYVAFT 596

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMV 685
           RA  +L +    +               +
Sbjct: 597 RAKKELFLSYVDSRFYRGNRAALMPSRFL 625


>gi|229496641|ref|ZP_04390355.1| ATP-dependent DNA helicase PcrA [Porphyromonas endodontalis ATCC
           35406]
 gi|229316538|gb|EEN82457.1| ATP-dependent DNA helicase PcrA [Porphyromonas endodontalis ATCC
           35406]
          Length = 809

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 93/564 (16%), Positives = 183/564 (32%), Gaps = 127/564 (22%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   + A Y    ++   +DF+DL+   N LL+       ++ +    ++++LIDE QDT
Sbjct: 174 MLHSVYAAYVAQCRQANAMDFDDLLYYFNILLRDHPE---VQAECAASVDYLLIDEYQDT 230

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ + R L E          + + +FAVGD+ QSIYSF GA  + +L          
Sbjct: 231 NPSQYLIARRLVE----------AKQRIFAVGDDAQSIYSFRGASMQNILTFTHTFP--- 277

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   + +L  ++RS+  I+ + + +     +       S            +   +
Sbjct: 278 -----SARLFKLEENYRSSQRIVALANSLIEHNVHRIKKDVFSNR---------AKGEKI 323

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            L+                          +  S    A+ +  +I             K 
Sbjct: 324 DLY--------------------------EMESGYREAQHVVESIYK--------RYCKH 349

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                    +L R    + L     R       I               IK+++A  + I
Sbjct: 350 SETSYGSFAILYRTNAQSRLFEDQLR----QAGIPYRIYGGIAFYSRAEIKNVLAYLQLI 405

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--------ETVYEYIQKFANCGISK 480
            +  ++ +F    K P     +  +  I T+  +         E++       ++   +K
Sbjct: 406 ANPHNNEAFERAAKYPRKGIGDKTLSLIRTEAADNKTSLFAAAESLIARPDTLSSTARTK 465

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTL 537
               ++ I ++ +  +  +  ++   IL   +      +    E     + ++EF++   
Sbjct: 466 LTAYLELIRDITYNPEAKTLVEWVQSILLRSQILDTLRADTSIEGHTQLENVNEFVSGVQ 525

Query: 538 RNEQNSYSSLQELIS------------ELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLE 584
             E  + +                    L+     T       N + V +MT+H AKGLE
Sbjct: 526 EFEDETSADGLFFERGETTSLHDLLVLFLQGVTLITDNLETGENADAVHLMTIHAAKGLE 585

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V++V     +F                                     +   ++   
Sbjct: 586 FDHVYIVGLEEGLFPS-----------------------------------MLSAEEENI 610

Query: 645 EEYNRLLYVGMTRASDQLIICKHS 668
           EE  RLLYV +TRA +   I    
Sbjct: 611 EEERRLLYVAITRAKEYCSISFAR 634


>gi|114778866|ref|ZP_01453665.1| DNA helicase II [Mariprofundus ferrooxydans PV-1]
 gi|114550901|gb|EAU53466.1| DNA helicase II [Mariprofundus ferrooxydans PV-1]
          Length = 699

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 103/627 (16%), Positives = 179/627 (28%), Gaps = 115/627 (18%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A +L+   +                  +    K I+ Q            L    +    
Sbjct: 86  AISLRLLRRYAEALAYPRSFQVIDADDQKALVKRILKQANIPADRLHPSFLLGWIEHCKH 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                            L     L + Y++  +++  +DF DLI+N   L+++    A I
Sbjct: 146 AGQTAEQAPACDWNGVDLR---GLYSTYQQQLREHERMDFSDLILNCVLLMREH---ADI 199

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              + +  +HIL+DE QDT+ +Q E +  L              R L  VGD+ QSIY +
Sbjct: 200 AEALQRRFDHILVDEYQDTNPVQHEWLTLLCA----------GHRNLTVVGDDDQSIYGW 249

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +L  +RI                L  ++RST  IL + + V S  E+    S 
Sbjct: 250 RGADIRHILEFERIW--------SGAGTHRLEENYRSTGAILDLANAVISKNEDRHDKSL 301

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            +T                                    W    D   +       AR+I
Sbjct: 302 RATQEQGLLPQ----------------------------WQVCNDEYDE-------ARQI 326

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              +                    +++ VL R  + +  +  + R       +       
Sbjct: 327 GTQLQAWRDAG----------YAWQEMAVLYRSNRQSLALEQILRE----QGLPYRIVGG 372

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-----HETE 464
               + L IKD +A    +    D L  + +   P          ++  Q         E
Sbjct: 373 VGFFERLEIKDALAYWALLNGCGDALQLMRICNRPKRGIGLKGQEQLAAQLSGSGLRAHE 432

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            +    +        K   + + I  L   A           +L          +    E
Sbjct: 433 WLDLVAEGGVGGVAGKLAPLARLIASLRPQAGTLPDRGLMA-LLQESGYLDSLQAMGELE 491

Query: 525 VI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                D +     +     +   + ++ +                 N   V +M++H AK
Sbjct: 492 AASRIDNIHTLQRYIELTMEQEITPIEFMDRAALLQSGEEAGRDDENEESVTLMSLHRAK 551

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   V L      +  H+                                       +
Sbjct: 552 GLEFDCVVLPGVEEGLLPHQRALDDG---------------------------------E 578

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHS 668
           +   E  RLLYVG+TRA   L +    
Sbjct: 579 AGIAEERRLLYVGITRARRHLKLTTAR 605


>gi|45658522|ref|YP_002608.1| exodeoxyribonuclease V subunit beta [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601765|gb|AAS71245.1| exodeoxyribonuclease V beta chain [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 1033

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 126/845 (14%), Positives = 274/845 (32%), Gaps = 107/845 (12%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           +L +A  +   +    K +  + ++ +I+ T D L+       +R  +       ++DE 
Sbjct: 171 ALIIADMVLKEF----KTSEWMSYDQMILKTRDSLENS----RLRKALQSRYRVGILDEF 222

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT   Q+E+ + L  +        +  R L+ +GD KQSIY F GA+    L+ K   +
Sbjct: 223 QDTDGAQYEIFKRLFLES-------NDDRALYLIGDPKQSIYGFRGADIGIYLQAKEELK 275

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           K       K   I L +++RS  +++   +++F      Q        +I  +   +   
Sbjct: 276 KH------KAEEISLNVNYRSVPELIRAYNEIFGGKSGKQSFFPILEQSIPIQYEPVFAP 329

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                  +V+     +  P Q    +  D    + + +   + I+  I  +I  +  F+ 
Sbjct: 330 KE---NIKVLLSDKQKQGPIQIVRFTGKDFWNTQDAKNAWGQFISEEILKLIHKEDPFTY 386

Query: 366 G--------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                     ++ ++ ++I VLV+ + +  L     +       I      +  +     
Sbjct: 387 QVAEGDLYYVEKKLKLREIAVLVKSKSEGKLAEQFLK----LRGIPCSFYKQEGIYQSAE 442

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
              +  +   +L      S+  +L   LF      +        ++       +      
Sbjct: 443 SYQISNIFECLLDPNKPSSYRKLLLGDLFQIHPAHLPYFDEHSIDSYEKSILDRWKTLSM 502

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             KF  + + I E   I       D        +   +Q   R     I           
Sbjct: 503 DRKFSELFRSIEEDSRIFLTEDATDIDWE--RKRTNYRQIFRRLLQFQIAN--------Q 552

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            + +     L+ L    +              + V+I+T+H +KGLE PVVFL +     
Sbjct: 553 ADLEEILEELKLLQKSFKNEEELPLFEKETEKDAVQILTLHASKGLEWPVVFLFNLSGDY 612

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                           D  G   W               +     +  E  RLLYVG+TR
Sbjct: 613 IP------EVYDYPFVDKDGKLSWKLSLWDNEEEKKISKEIYSNQSLNENKRLLYVGITR 666

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           +  ++ +  ++  +N K  +   +  +        E      L + ++   W    + + 
Sbjct: 667 SKVRIYLPFYTPLNNWKTRDSAYYKILYPRLQSILENEIDTDLFHVVS---WAPTPFDST 723

Query: 718 HPENTPLEREETI-------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
            P+      +  I       ++    + I    +S ++  +N    ++ S ++ K +   
Sbjct: 724 DPKRIDWNLDSEICFTPLLYEEPETSKTIRLNSYSSLRTSMNFSEEVSLSVLEEKTRIQS 783

Query: 771 ESLLSDNQ--------TFNRGLIIHKLLQVIFT--LPEHKRKNFIT-------------- 806
           + + +           + + G  +H LL+ +          K  +               
Sbjct: 784 DDVENSETVIKDALPSSASIGSFLHSLLEELDFSIFKTTTSKELLKNEKIISRMDFHLDY 843

Query: 807 -SYCTKNAKLWP---AKEYKNLLLSITRLLEN---------PMMTTAMSCDSYSEVSVSG 853
                +    +        K  +  +  LL             +      +  SE+    
Sbjct: 844 FRILKREEGRFILEKETVQKRTVEILWNLLNANILDQKGALFRLVDLPKENRVSEMDFYL 903

Query: 854 KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP-------QEIEHIPYTHIAQLSI 906
            ++    +  + G ID +       ++ +YK++           + +E++   +  Q  I
Sbjct: 904 DLDTNPGN-FLRGSIDLVFQIDDKFYLADYKSNLLEDYSTISLKRNVENLESRYDLQRDI 962

Query: 907 YEKIL 911
           Y  +L
Sbjct: 963 YALVL 967


>gi|283780044|ref|YP_003370799.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
 gi|283438497|gb|ADB16939.1| UvrD/REP helicase [Pirellula staleyi DSM 6068]
          Length = 1049

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 132/890 (14%), Positives = 274/890 (30%), Gaps = 100/890 (11%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                           +K  P K +   E      ++   +       I+       +++ 
Sbjct: 238  ESIAAIEAEDFKLFLEKGIPSK-LAAGEDKFYGKEIPPPIIAIYRTLIQHAASQLVHQVA 296

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              T A+  L  +    Y+  ++++  L F+D+       L    ++     ++   I H+
Sbjct: 297  MQTEATWQLLDHFAGVYQRLQREHRSLRFDDVTQQLAAGLDSSKLAQST-SRLGTRIEHL 355

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QDTSL QW V+  +               TL  VGD KQ+IY + G         
Sbjct: 356  LLDEFQDTSLTQWRVLLPIATQMLATHPA----STLLCVGDVKQAIYGWRGGLASIFAAV 411

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +    + A+         EL  S+R +  ++  V+ VF        L   S    + +++
Sbjct: 412  QEQLPEIASE--------ELATSYRCSQPVIDCVNLVFKNLLQHTSLENASEAVKKWQTT 463

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                           ++ +           +  +   Q+      A   A  I+ +    
Sbjct: 464  FPQHS---------TAKKELSGYVALHVAPAADEGETQKRLRLQYA---ANLIAQLAAAH 511

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
               S G           VLVRK      +  L R       +         L D   ++ 
Sbjct: 512  PTRSLG-----------VLVRKNDTVAEMMLLLR----QRSVRASEEGGNALCDSAPVEI 556

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            +++  R      D ++   +  SPL +    D                          S 
Sbjct: 557  ILSALRLAEHPADSVARFHLAHSPLGHALGFD-------------------ADQFDDTSL 597

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
               +   I   +    +      +  IL                    L + +    +  
Sbjct: 598  AAEISARIRRDLLEQGYGKVVLAWARILAPH---------CQPRDEARLGQLVEMAYQLG 648

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             N    ++ LI  +E               +VR+MTVH AKGLE  +V L +    +   
Sbjct: 649  NNPSLRIERLIEIIETRRV-----SDPAAAKVRVMTVHQAKGLEFDLVVLPELDESLTGQ 703

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSR--NNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              +              +  +  +   +     + +L +    +   E   ++YV MTRA
Sbjct: 704  VPMFVTGRSSPYGPVDTVCRYANKQTQQQLGKSLVELFQTHTDAAVTESLCVMYVAMTRA 763

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
               + +    +   +  + +R +  ++  +    E +       +  +     +      
Sbjct: 764  IHAMYM--VVDPPTKTGTLKRDYAGLLKATLTTSEVLPNSVAFETGEETWRPDHAAIDLT 821

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL--SD 776
             +  P +    I  +      P  +             ++PS ++   K  ++ LL  SD
Sbjct: 822  LDTVPDDYASEIPTID-----PIDIAKKPAFPPRLVDRVSPSELEGGPKVRMDFLLGTSD 876

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                 RG +IH  ++++    +    +      +  A      E   ++    R L  P 
Sbjct: 877  RLALARGTLIHGWMELVDWTDKPLPTDEALR-ASDYAASSEPAELDAMIAEFRRYLAQPA 935

Query: 837  MTTAMSCDSYSEVS------VSGKINCPKKDIIISGRIDQISIS--QQNIF---IFEYKT 885
            +   +S + Y+E                  + +++G  D++ +      +    + ++KT
Sbjct: 936  IRELLSTERYAEHRGELQLLREHPFAVRDGEQLLTGSFDRVVLWSQGGKVIGAEVIDFKT 995

Query: 886  HHHVPQEI-EHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKV 932
             H    +        +  QL  Y + +   Y  P   +   L ++    +
Sbjct: 996  DHGKDADELSSRVAFYTPQLRAYRRAIMSLYHLPESQVTLTLAFLKSGTI 1045


>gi|194363828|ref|YP_002026438.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia
           R551-3]
 gi|194346632|gb|ACF49755.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia
           R551-3]
          Length = 658

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 105/729 (14%), Positives = 229/729 (31%), Gaps = 146/729 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K L         ++      ++      I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRLR---EQDADEVTICTFHALGLKFLQIEHAAVGLKRGFSIFDADDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D+K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMYGAKPDDIEDMKNLVSRAKNAGLSPEQAMAAARSNREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  +   Y+        +DF+DLI     +L++      I     + I ++L+DE QD
Sbjct: 162 --AASVYERYQLRLTAFNAVDFDDLIRLPVQVLEENPD---IAVAWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L  D                VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKQLAGD----------KGNFTCVGDDDQSIYAWRGANPENLQQMGRDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +           ++   S       
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIANNPH---------EHLKKLWSDQADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +  ++   A ++A  I+            +
Sbjct: 310 IRVW--------------------------ECRNSEHEAEKVAAEIA---------FVAQ 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            R +   D  +L R    +  +    + L+    I        +  +   +KD +A  R 
Sbjct: 335 SRKVPWSDFCILFRGNFQSRPLEKAMQLLR----IPYHLTGGTMFLERQEVKDTLAWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISK 480
           +++ +DD +F+  ++SP  +     + K+     E +            +Q+      + 
Sbjct: 391 LVNPDDDTAFMRAVQSPKRDVGAGTLAKLAELAQEKDMPMAQAAEAIGALQQLPPRAANS 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + +L    +  S  D    +        +   +   E       + ++E    
Sbjct: 451 LARFTDILRDLRAQTRQISSGDMIRKVAKESGLLSELRQQAKEEASYQRRANNIEEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     ++  +L  +L       +       N+VR+MT+H +KGLE P VF+V   
Sbjct: 508 AQWFEGGPRGATAADLAGQLALLS---RSDKDEGGNQVRMMTMHASKGLEFPYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                       +   +E  RLLYVG
Sbjct: 565 DGVLPHQVSLD-----------------------------------EGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA  QL +             +     +++ +       +    +       +     
Sbjct: 590 ITRAKIQLWMSYSKLTRKFGEHVRLKPSRFFEEIPAEEIQRDGADPVADAARKKERASAG 649

Query: 712 YEWSTHHPE 720
                   +
Sbjct: 650 LAAIEALFD 658


>gi|256421211|ref|YP_003121864.1| exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588]
 gi|256036119|gb|ACU59663.1| Exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588]
          Length = 1152

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 109/875 (12%), Positives = 269/875 (30%), Gaps = 119/875 (13%)

Query: 86   TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
             +   K    L   +    DE   + +          +       + + A  +  KK+N 
Sbjct: 281  KRNSAKYISTLLPDMLAHMDEVAVVDEERKGVVQQVISRLYCFAIEEIAAGVKGFKKRNN 340

Query: 146  VLDFEDLIINTNDLL--KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
            +L ++D+I N +  L  +       +   + ++   + +DE QDT  +Q+E+      + 
Sbjct: 341  LLSYDDMITNLHKSLVDRNNPKLEEV---LREKYKAVFVDEFQDTDRMQYEIFEKAFGES 397

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                        LF +GD KQSIY++  A+     + +   Q           +  +  +
Sbjct: 398  T----------ILFYIGDPKQSIYAWRKADIFTYFKARASVQ----------HVYGMNRN 437

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            FRS+   +  +++ F                        G+   +   +    + +++  
Sbjct: 438  FRSSEPFIAAMNQFFLPVPGFDTF------------YFEGEGSAINYIKVDSPESNTKGL 485

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT--IFSNGKKRVIQAKDILVLVR 381
              +        S+   S+++ L+  +A  ++ ++ +    I    ++R ++  DI +LVR
Sbjct: 486  LFRGDEPDVPISVFNTSNSTELSESVAAQVAALLRSGEYFIGDEDERRPVKPSDIGILVR 545

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
              +         +       I  V  D   +        L+ L   +L+  D  S    L
Sbjct: 546  TGRQGR----EVKAQLARLGIPAVTVDDAKVLQSEEATYLLYLMEAMLAP-DRSSINRAL 600

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             SP      + +  +  +           +   +   +     +   +         +  
Sbjct: 601  LSPFTGLKLESVLTLDDEVTLGLFGNYKNRWQQDGIYTAMMDFVTDFNV--RNVLLHAHT 658

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            +    I+       + + +  +     + E ++            L+  I  +       
Sbjct: 659  ESGERIISNLFQLTELVHQIQSRKNLSMTELVS-----------WLKRGIDGMATEGDEY 707

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            ++   ++   V I+T+H +KGLE  +V         F                   + + 
Sbjct: 708  EQRMESDEEAVNIVTIHKSKGLEYKIVMAPYLD---FVENKYIAFFSFRDPLTGDYVGVE 764

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
              +         +      +  ++E  RLLYV +TR   +  +    N  ++K +     
Sbjct: 765  KKRMTD------EQQASYARQAEQENRRLLYVAITRGVYKCFV--FRNNYHKKSTLLTFL 816

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              +V  +   D       +            +         P++ +  ++ ++ EQ   K
Sbjct: 817  EALVAAAPSPD------IIRFEEGMPVAPEQQAGNKVLPLAPVDPDMPVRFVLKEQNWRK 870

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
              ++ +            S  +   +T +   L        G ++H L + I    + + 
Sbjct: 871  MSYTMLAAKAEHNLRTRASQKEDPYETFIFHTLKR--GAKTGNLLHFLFENINFSEDSRW 928

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSG 853
            + +IT    +            L   +  +L+  +        +   +      E     
Sbjct: 929  EKWITETVRRFVPGQQDLYGPMLRQLLEHVLQTDITVDGRTFPLAAIIWHKRIPEFEFDF 988

Query: 854  K-----------INCPKKDIIIS---------------GRIDQISISQQNIFIFEYKTHH 887
                        ++  +  +++                G++D     +   +I ++K+++
Sbjct: 989  PVSAFFPDMLNGLSDDRTSVVVRRFHEQGSSELEGIMNGKMDLFFEHEGRYYILDWKSNY 1048

Query: 888  HVPQEIEHIPYT---------HIAQLSIYEKILKD 913
                  ++ P           +  Q  IY    K 
Sbjct: 1049 LGGTPEDYTPTAVSAAMNENNYHLQYLIYTLAAKK 1083


>gi|239906473|ref|YP_002953214.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239796339|dbj|BAH75328.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 624

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 97/566 (17%), Positives = 182/566 (32%), Gaps = 125/566 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YEE K    + DF+DL++     L     +     K      HIL+DE QDT+
Sbjct: 157 TAMVFKEYEEQKAIRYLYDFDDLLLQAYRFLAHEGGAE----KYHDVYPHILVDEYQDTN 212

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q  V+++L ED   G        + +A GD+ QSIY+F+GA    +LR K+I      
Sbjct: 213 PAQLAVLQALIEDTGRG--------SFWACGDDWQSIYAFNGASIGNILRFKQIFP---- 260

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I L +++RST  IL    K+    +            I          G   
Sbjct: 261 ----SAQEIVLNVNYRSTPAILAACQKLIDHNQ----------RKIPKELIAHKPGGNHD 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L+       + +                        A  +A  I ++             
Sbjct: 307 LFVIDTFNEEEE------------------------ACLVANEIKHL---------SVSD 333

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D+ VL R    +     + + +     I    ++     +   ++ L+   RFI 
Sbjct: 334 GTAYSDMAVLYRANFQS----EILQNVFVRAGIPFYIDNGMSFYERREVRILLDYLRFIE 389

Query: 430 SQED---DLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC---GISKFQ 482
             +    D +   ++ +P     +  + ++       + ++Y+ ++              
Sbjct: 390 DPDSVAGDEALQRIINAPNRYLGKKFMEQVAGVANEASCSLYQALRTMDFDSPYIRRNVH 449

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLR 538
             ++ +   I       P +    +       +           N+ +  L++ L    R
Sbjct: 450 EFVRLMESFIQNEGEMGPAEVLAKLRQRLDYDRFVTDKDIPSPDNQAVLNLNQLLQSAAR 509

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 +S+ E ++ +             + + V++MT+H AKGLE PVVF+V     + 
Sbjct: 510 Y-----ASISEFLTYVATVEDETCSR---DPSGVKLMTIHKAKGLEFPVVFVVGLVEGIM 561

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             K                                           EE  R+ +V ++RA
Sbjct: 562 PTKRG---------------------------------------DLEEERRICFVALSRA 582

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDM 684
            D+L +    N   +         +M
Sbjct: 583 MDRLYVTYSHNYLGQPAKRSIFIDEM 608


>gi|222054488|ref|YP_002536850.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32]
 gi|221563777|gb|ACM19749.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32]
          Length = 1083

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 118/859 (13%), Positives = 251/859 (29%), Gaps = 134/859 (15%)

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               YL A   + K K  +  F+DL+++ +  ++  D S  +   I +     LIDE QDT
Sbjct: 226  FFDYLAAELPKRKGKKNIRFFQDLLLDLHAAVQTTDCS--LAPMIREHYRAALIDEFQDT 283

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
              IQ+ +   +                 F +GD KQ+IYSF GA+    L   +      
Sbjct: 284  DPIQFRIFDRIY--------PAGDTTPFFLIGDPKQAIYSFRGADIFAYLDAAK------ 329

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                       L  ++RS   ++  V+ +FS      G+ E     +             
Sbjct: 330  ----SPLVGHSLGENWRSEPRLIQAVNGLFSSRTAPFGMEEIQFHQVTPAERER------ 379

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-K 367
            +L      +  +               + +  +  +L   +A  IS ++           
Sbjct: 380  ELLTLDGREDAAPFRFWFAGRRETGKPINKGDAWQMLTDAVAGEISQLLHDGAEGRLCIG 439

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R I   DI VLVR  +   L+      L     I  V      L +    ++++     
Sbjct: 440  NRPIAPGDIAVLVRANRQARLVQRALSRL----GIPSVVCSAGNLFESAEAREVLHFLAA 495

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +    ++      L + L   S DD+  I     E E  +E +    +    ++Q     
Sbjct: 496  VADPANERQVRAALVTDLLGLSGDDLAAI----GENEPRWEAVLAEFSSYHDQWQTG--- 548

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
               +     F +     + IL    GR++            +                 +
Sbjct: 549  -GCMTMAMGFMAARQVRSRILALSDGRRRLT---------NVLHCFEAVHGAAVLHRLGM 598

Query: 548  QELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            + ++S L       +     +     + + V+++T+H +KGLE  VVF     ++    +
Sbjct: 599  EGVVSWLAERIGEKEQREEHEIRLETDSDAVQLVTIHKSKGLEYQVVFCPFNWAEYGRRE 658

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                 H    L          P     +  +    +   +    E  RLLYV +TRA  +
Sbjct: 659  KTVTFHGDDRL----------PTIDMGSPELEVNRQRAAREAMAENLRLLYVAVTRARHR 708

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP-E 720
              +   +       +     +     +        +  L +        A   +   P +
Sbjct: 709  CYLAWGAFKDAGNSALHYLLHPQATANNGQVSLTDEEILADLHRIAGNAAGSIAIEAPFQ 768

Query: 721  NTPLEREETIKQLMD-------------------EQKIPKKLFSPIKNDINEPYILNPST 761
             TP        Q                                    ++ +      + 
Sbjct: 769  GTPQPYPAKAPQPEKCVCRTFTGRIDRDWRVTSFTSFSSSTRHGAHAAELPDRDAAALAK 828

Query: 762  IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
             +         + +  +    G+  H++ + +           + +   K+   +  +  
Sbjct: 829  GEDYSDLPASGIFAFPRGTAAGIFFHEIFENLDFTDFATAPGLVEALLKKHG--FAGQWL 886

Query: 822  KNLLLSITRLLENPM--------MTTAMSCDSYSEVSV---------------------- 851
            + +L     +++  +        ++        +E+                        
Sbjct: 887  ETVLSMTRNVIQTRLTTDAGSFTLSEIGPDRRLTELEFFFPLARISSDTFREAAASWNDA 946

Query: 852  ---------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI--------- 893
                     + K++      ++ G +D +        I ++K++H   ++          
Sbjct: 947  ASELNLAELAAKLSFTPVRGMLRGFMDLVLEHGGRYHIIDWKSNHLGNRQENYGSGEMAR 1006

Query: 894  EHIPYTHIAQLSIYEKILK 912
            E     +  Q  +Y   L 
Sbjct: 1007 EMADNLYHLQYLLYTVALH 1025


>gi|288817811|ref|YP_003432158.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|288787210|dbj|BAI68957.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|308751409|gb|ADO44892.1| UvrD/REP helicase [Hydrogenobacter thermophilus TK-6]
          Length = 657

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 113/661 (17%), Positives = 214/661 (32%), Gaps = 127/661 (19%)

Query: 29  SDINKYVSLSMETGNPTILKKAQTLQQASQTQ-CIEERFSLLSSFFLTQKF-----TPQK 82
             + +   L +   N    +  + + + +  +      F  ++   L Q+       P  
Sbjct: 42  RGLRQDRILILTFTNKAAREIRERIVKLTNKEVPWAGTFHSIALKILRQEGYKMGIDPSF 101

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
           +II ++  KK      +      + +++ + + T +         +  + +   Y    K
Sbjct: 102 SIIDEDDRKKILKEVLRRMNLSKDMLEVANNYITSRRESLREPEDSTLEEVYRQYSSVLK 161

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF +L+  T  LLK                  +++DE QDT++IQ+E+++ L ++
Sbjct: 162 SRNFLDFSELLFKTYQLLKNYSDG------WRDFFEFVMVDEFQDTNIIQYEMVKLLAKE 215

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +  VGD  Q IY +  A P  +L+     +           II+L  
Sbjct: 216 ------------NICVVGDPNQCIYEWRYARPDNMLKFVEDFKPD---------IIKLEY 254

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS A I+ V + V S                        +     L   +    D + 
Sbjct: 255 NYRSKAHIIAVANAVLS----------------------ASKAQWKSLTPVLKPVRDGEE 292

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
            P    ++   +              IA  I  ++              + +DI +LVR 
Sbjct: 293 KPVVRRFSDPLEESL----------WIAREIKRLLSR-----------YKPQDIAILVR- 330

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                 +T +      + +I           +   IKD++A  + +++  D+LSF   L+
Sbjct: 331 ---ALYLTDIFERTFFNARIPYKIVGSVKFFERAEIKDVLAFLKLMVNPSDELSFKRCLE 387

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH- 501
           +       +  F I  + H+ + +   I    +    K + +   I  LI + Q    + 
Sbjct: 388 NVQIG---ERTFAIIKRFHQGDWIASSILAIKHMSEEKSKRLYHLIRNLIKLKQSIDEYP 444

Query: 502 DFFTLILGAKKGRQQFI---SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
                IL              +   E  + + E   F    ++   S L+          
Sbjct: 445 TALWEILEHVGYLNYMQVKYQKDYKEREENIKELFRFLEEKKKEGASVLE------VLEE 498

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
             +          V IMT+H +KGLE PVVFL      +  H+                 
Sbjct: 499 VMLISQEEETAQAVNIMTIHASKGLEFPVVFLPRLEEGILPHE----------------- 541

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                     EE  RL YV +TRA D L +    + +++     
Sbjct: 542 -----------------KSKEDIQELEEERRLFYVAITRAKDMLYMTYTRDKNSKPSRFL 584

Query: 679 R 679
            
Sbjct: 585 S 585


>gi|325474933|gb|EGC78119.1| UvrD/Rep family ATP-dependent DNA helicase [Treponema denticola
           F0402]
          Length = 745

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 113/725 (15%), Positives = 212/725 (29%), Gaps = 155/725 (21%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI-----EERFSLLSSFFLTQ 76
           P     V+  NK      E  +    +  + + +   +           ++ LS  F   
Sbjct: 54  PERILAVTFTNKAAKEMSERASNLDKRAERAMIRTFHSFGAWILRMYAEWAGLSHNFTIY 113

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK--IRDRFNTYKMFKSTLASLTLAKYLN 134
                 +++TQ     + +    + K         +       +              + 
Sbjct: 114 DDDDALSLLTQASPALTKNAARGIIKKISRAKDYCLLPDDPLLQEVDPNPEF----AKIY 169

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           + Y++  K+   +DF DLI+    LLK+      IR  +    + I++DE QD+++ Q+E
Sbjct: 170 SEYQKRLKETGNVDFGDLIMIPVMLLKENP---QIRASLQNRFSVIMVDEYQDSNIAQFE 226

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++ LT +             +  VGD+ QSIY F GAE + +L      +         
Sbjct: 227 FLKVLTGENTY----------ICVVGDDDQSIYRFRGAEVQNILTFADTFKN-------- 268

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             II L  ++RS ++IL V D V        G +  +      +                
Sbjct: 269 TKIIRLEKNYRSYSEILAVADSVVKKNTGRLGKTLVAERGKGQKPHIYFLP--------- 319

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                  QE+ A + AR I+  + N                   
Sbjct: 320 ----------------------NQETEAELCARLISQEVEN--------------GGAYS 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  VL R    +          K    I           +   IKD +A+   I +  D+
Sbjct: 344 DWAVLYRTNAQSLNFETDFLHKK----IPYQVIGTLKFYEREEIKDALAVLALISNGRDE 399

Query: 435 LSFVCMLKSPLFN---FSEDDIFKICTQRHETETVYEYIQK-----------------FA 474
           ++   ++  P       ++  +  +  +   ++   E + +                   
Sbjct: 400 VALRRIINKPARGVGEITQKKLIDLSRELMFSQKSDELMLESKDDYISAMSALINSVSLT 459

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPH------------DFFTLILGAKK---GRQQFIS 519
                  ++ +  I EL  I +                  F   +L         +   S
Sbjct: 460 KKAKEGLKNFLNTIKELRSIIEAGDIFFKKEEPKGEGLAPFIYEVLKQSGFAEYYESVDS 519

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
             G +    L+E  N     + +    L E +  +E              + V ++T+H 
Sbjct: 520 ASGTQKTANLNELANTASLYDFS-VKGLSEFLEHIEL--DRSLAESEEKKDSVNLITIHN 576

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            KGLE   V +    + VF   +                                     
Sbjct: 577 TKGLEFKNVIITGLETGVFPRDNGN----------------------------------- 601

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL+YV  TRA D L +   S+               +++   +   + +  
Sbjct: 602 -FDELEEERRLMYVACTRAKDALYMTSCSSRRLYGSLTFTQPSRFIFEIDKDLVNISEAS 660

Query: 700 LTNSI 704
              S 
Sbjct: 661 SPYSA 665


>gi|229524876|ref|ZP_04414281.1| ATP-dependent DNA helicase Rep [Vibrio cholerae bv. albensis VL426]
 gi|229338457|gb|EEO03474.1| ATP-dependent DNA helicase Rep [Vibrio cholerae bv. albensis VL426]
          Length = 671

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 221/664 (33%), Gaps = 135/664 (20%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRLLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +        M K       L  +    Y++  +    LDF+DLI+    LL+  +    +
Sbjct: 146 MLTPPQAKAMAKGEQQ--QLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWRNRIRYLLVDEYQDTNTSQYELVKLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKAL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S      +                                     +   ++    A R+
Sbjct: 303 FSELAEGEKL-----------------------------------KVILANNEDHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I          ++      + +D  +L R    + LI           ++    +  
Sbjct: 328 TAEI---------IAHKFLNRTEYRDYAILYRGNHQSRLIEKSL----TQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++ 
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFT 434

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               +   +++  +   A+  +  +    ++   +          
Sbjct: 435 ASFELGLEQHLSGRGLENLRRFTEWLVTIADNAERGNTVEAVRALVRDIRYEDWLYETSA 494

Query: 520 --RFGNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEV 572
             +     +  + +  ++ + + +          L+E++  L       +   + + + V
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V+L+     +  H+                               
Sbjct: 555 QLMTLHASKGLEFPYVYLIGAEEGILPHQTSID--------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +   EE  RL+YVG+TRA  +L            +  + T    + +    D
Sbjct: 588 --------EENVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQED 639

Query: 693 ERVK 696
              +
Sbjct: 640 IEWE 643


>gi|262163714|ref|ZP_06031454.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM223]
 gi|262027694|gb|EEY46359.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM223]
          Length = 652

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 95/659 (14%), Positives = 219/659 (33%), Gaps = 123/659 (18%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    K +  ++++     L+  L    +    +        M +       L  +   
Sbjct: 93  DQMALLKELTEKQLDGDKDLLRLLLSTISNWKNDMLTPQQAKAMAQGEQQ--QLFAHCFE 150

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  +    LDF+DLI+    LL+  +    +R +    I ++L+DE QDT+  Q+E+
Sbjct: 151 LYQKQMQSYNALDFDDLILLPVLLLRSSEE---VRQRWQNRIRYLLVDEYQDTNTSQYEL 207

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L  +             L  VGD+ QSIYS+ GA+P+ ++                 
Sbjct: 208 VKLLVGE----------RGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFP--------SL 249

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I+L  ++RST+ IL   + + +   +    +  S      +                 
Sbjct: 250 KLIKLEQNYRSTSRILRAANILIANNPHVYQKALFSELAEGEKL---------------- 293

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                               +   ++    A R+   I          ++      + +D
Sbjct: 294 -------------------KVILANNEDHEAERVTAEI---------IAHKFLNRTEYRD 325

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    + LI           ++    +          IKD+MA  R +++ +DD 
Sbjct: 326 YAILYRGNHQSRLIEKSL----TQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 381

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKYI 488
           +F+ ++ +P        + K+        ++++    +               +H  +++
Sbjct: 382 AFLRIVNTPKREIGPATLEKLGSYANMRGKSLFAASFELGLEQHLSGRGLDNLRHFTEWL 441

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRNEQNS 543
             +   A+  +  +    ++   +            +     +  + +  ++ + + +  
Sbjct: 442 VAIADNAERGNTVEAVRSLVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD 501

Query: 544 YSS-----LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                   L+E++  L       +   + + + V++MT+H +KGLE P V+L+     + 
Sbjct: 502 NPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGIL 561

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                       +   EE  RL+YVG+TRA
Sbjct: 562 PHQTSID-----------------------------------EENVEEERRLMYVGITRA 586

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
             +L            +  + +    + +   +D   +  K   S  +          +
Sbjct: 587 QRELTFMVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKKKPVSQEERMVKGQAHIAN 645


>gi|294649115|ref|ZP_06726557.1| exodeoxyribonuclease V beta subunit [Acinetobacter haemolyticus ATCC
            19194]
 gi|292824998|gb|EFF83759.1| exodeoxyribonuclease V beta subunit [Acinetobacter haemolyticus ATCC
            19194]
          Length = 1237

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 138/1011 (13%), Positives = 287/1011 (28%), Gaps = 171/1011 (16%)

Query: 50   AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
             ++L Q  +     +   +   +    + T  K +   +  K       ++     +   
Sbjct: 274  CESLPQLLKALADPQNIQVFDGYLSDARETVFKFLDKLDSQKIFKKCPAEVSDGFYQHPT 333

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYE---------EAKKKNCVLDFEDLIINTNDLL 160
            I          K T       +     Y          +  ++     F   I   ++ L
Sbjct: 334  ILHIQKLCHSLKETQQQFEQLQVYLKAYLCIEVKKRLPQVLQQKGETTFAHQIKTLSEAL 393

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            K  +        +      IL+DE QDT+  Q +++ ++                +  VG
Sbjct: 394  KG-EQGQRFAVFVQARYPLILVDEFQDTNQDQDDMLATIWR-----HPQRYQKGCMIMVG 447

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D KQ+IY F G +    L   +          ++    +L  + RS  +++ VVD +F  
Sbjct: 448  DRKQAIYGFRGGDMLTFLNAYQDI------MSKQGREYKLIHNHRSVKELVEVVDVLFQR 501

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
              +              R                    + Q NP    W    D   Q  
Sbjct: 502  QMDFGEQVLYDPIQAGSRPHPA-------------LIENGQLNPAPLRWLQLQDGNEQ-- 546

Query: 341  SASILARRIAYTISNMIGTDTI----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                 A ++A+ I  ++    +          +VI   DI VL R  +    + +    L
Sbjct: 547  -----ATQVAWKIQCLLNQAHLQQLYLDGDNHQVISEDDIAVLSRSHRQLDEVQYALERL 601

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 I V    +  + D    +D+ AL   +L   D+      L S LF F    +  +
Sbjct: 602  ----GIRVNRPSKRSVFDSKIAQDVGALLTALLHPYDEAKLKRALLSRLFGFDLSQLVAL 657

Query: 457  CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                                      H I+   ++  +         +   L   +  QQ
Sbjct: 658  EQSA------------------EGLSHYIQQFDDIREMWLNQGFLAAWQRCLNQFEIWQQ 699

Query: 517  FISRFGNEVID---VLDEFLNFTLRNEQ--NSYSSLQELISELEQYPPTIKRAHS---AN 568
             ++    +       L    +   ++ +      +L     +    P   +       ++
Sbjct: 700  LVATQSKDNERAVVNLRHLTDILSQHSEHVQGIHNLYHWYLKQLHSPSDREWELEHKLSS 759

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP--SLNDDPGIPIWIPQSK 626
               V++MT+H +KGLE  +VFL+         +                      +    
Sbjct: 760  EAGVQLMTIHQSKGLEFKIVFLLGANKAFSEMQKTLNFSTTEIQIPETGQTRTQRVVAIA 819

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
             +N +    +   ++  Q E NRL YV +TRAS ++         ++ K +      + +
Sbjct: 820  DKNFLQQTELDQHQQRAQAEQNRLWYVALTRASHRVYAIFEPEKGDKNKLSG-----LAF 874

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ-LMDEQKIPKKLFS 745
               H D       + + +  +   +       PE        T ++     +     L  
Sbjct: 875  WKNHGDIFQHPYSVEDHLLLERPASLRTQETQPERLLAAEPLTTQRFYARGKTSFSYLAQ 934

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLS----------------DNQTFNRGLIIHKL 789
             +K+  N    L  +        +  +LL+                  +    G  +H++
Sbjct: 935  HLKHKANRLDRLANADQQFDQAEDEINLLTVESVAVSQPIAWIKHYFPKGTLAGNFLHEI 994

Query: 790  LQVIFTLPEHKRKNFITS------------YCTKNAKLWPAKEYKN------LLLSITRL 831
             + I           I                 +  + +P +E         + L +  +
Sbjct: 995  FEQIDFQHPETWIEEIRRRFKNTYQGLWVALLEQYQQHFPEQENAEQQLYQWIALWLADV 1054

Query: 832  LENP-----MMTTAMSCDSYSEVSVSGKINCPK------------------------KDI 862
            L+ P      +   +     SE      ++                              
Sbjct: 1055 LQTPLNQGFQLQQLVVGQYLSECPFYLALSDRVLAMQRVQQLFEEYDIQMPEFIDAKSAR 1114

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPY-----THIAQLSIYEKILKD 913
             ++G ID +    Q   I +YK+++    + +     I       ++  Q ++Y   L  
Sbjct: 1115 YLNGSIDLVFFDGQRYHIADYKSNYLGENQADYQSTQIAESMSLSSYWLQAALYLVALHR 1174

Query: 914  SYPNK----SLV-----CLLIYVSE-------PKVFIIPQNKLNKAFAEIS 948
                K     +         +Y+            +  P+++       I 
Sbjct: 1175 YLSVKLENYRIEQHLGGASYLYLRGMNGQADQGYFYWKPEDEFVLRLDAIL 1225


>gi|190572176|ref|YP_001970021.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas
           maltophilia K279a]
 gi|190010098|emb|CAQ43706.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas
           maltophilia K279a]
          Length = 658

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 104/729 (14%), Positives = 229/729 (31%), Gaps = 146/729 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K L         ++      ++      I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRLR---EQDADEVTICTFHALGLKFLQIEHAAVGLKRGFSIFDADDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D+K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMYGAKPDDIEDMKNLVSRAKNAGLSPEQAMAAARSNREKE--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  +   Y+        +DF+DLI     +L++      I     + I ++L+DE QD
Sbjct: 162 --AASVYERYQLRLTAFNAVDFDDLIRLPVQILEENPE---IALAWRERIGYLLVDECQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L  D                VGD+ QSIY++ GA P+ + +  R     
Sbjct: 217 TNDAQYRLLKQLAGD----------KGNFTCVGDDDQSIYAWRGANPENLQQMGRDYPA- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +           ++   S       
Sbjct: 266 -------LEIIKLEQNYRCSNRVLRAANALIANNPH---------EHLKKLWSDQADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +  ++   A ++A  I+            +
Sbjct: 310 IRVW--------------------------ECRNSEHEAEKVAAEIA---------FVAQ 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            R +   D  +L R    +  +    + L+    I        +  +   +KD +A  R 
Sbjct: 335 SRNVPWSDFCILFRGNFQSRPLEKAMQLLR----IPYHLTGGTMFLERQEVKDTLAWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISK 480
           +++ +DD +F+  ++SP  +     + ++     E +            +Q+      + 
Sbjct: 391 LVNPDDDTAFMRAVQSPKRDVGAGTLARLAELAQEKDMPMAQAAEAIGALQQLPPRAANS 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
                  + +L    +  +  D    +        +   +   E       + ++E    
Sbjct: 451 LARFTDILRDLRAQMRQVTSGDMIRKVAKESGLLSELRQQAKEEASYQRRANNIEEL--- 507

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E     ++  +L  +L       +       N+VR+MT+H +KGLE P VF+V   
Sbjct: 508 AQWFEGGPRGATAADLAGQLALLS---RSDKDEGGNQVRMMTMHASKGLEFPYVFIVGCE 564

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V  H+                                       +   +E  RLLYVG
Sbjct: 565 DGVLPHQVSLD-----------------------------------EGNLQEERRLLYVG 589

Query: 655 MTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +TRA  QL +             +     ++D +       +    +       +     
Sbjct: 590 ITRAKIQLWMSYSKLTRKFGEHVRLKPSRFFDEIPAEEIQRDGADPVADAARKKERASAG 649

Query: 712 YEWSTHHPE 720
                   +
Sbjct: 650 LAAIEALFD 658


>gi|169349910|ref|ZP_02866848.1| hypothetical protein CLOSPI_00649 [Clostridium spiroforme DSM 1552]
 gi|169293478|gb|EDS75611.1| hypothetical protein CLOSPI_00649 [Clostridium spiroforme DSM 1552]
          Length = 1236

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 118/626 (18%), Positives = 228/626 (36%), Gaps = 43/626 (6%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS-QDEFIKIRDRFNTYKMFKSTLASLT 128
           +     +     K    +  N      K+       D   + +   +T K+   T   + 
Sbjct: 305 ARGLFNEDNENAKAEYNRLKNGIVKFYKDTFNDLVYDNLDEFKLTLSTSKIPLKT--LIN 362

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
             K     Y+E K +N +LDF DL  N  +LL   +    I   +  ++  I+IDE QDT
Sbjct: 363 YLKKFKIAYQEYKTQNNLLDFNDLEANALELL---EPKYKIANLLYNQLKEIMIDEYQDT 419

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ  +I  + +               F VGD KQSIY F  A+PK    +     +  
Sbjct: 420 NQIQETLINKIAD-------LKKPVINRFMVGDMKQSIYRFREADPKIFSDKYNTFNRL- 471

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA----QGLSEDSTTTIRHRSSRIGQ 304
                    I+L  ++RS   +L  V+ +F+   +          D +  + +   R   
Sbjct: 472 ----PNTKRIDLKFNYRSNKIVLDSVNYIFNQIMDNDIGGLDYYLDESAKLNYDYLRKEG 527

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS---ASILARRIAYTISNMIGT-D 360
              ++  + V      + + +    T    S     S   A + A+ +A  I +M+G  +
Sbjct: 528 AKELEDLDSVTLNASKRLDQENRFTTEVLLSYQTNISSKDAELEAKIVAKKIQDMVGKLE 587

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
               N  KR+ + KDI+VL+R  ++      +     + Y I               I  
Sbjct: 588 LDNFNKTKRLTEYKDIVVLMRNTRNFIAFKKIF----SKYNIPSHIVLSQGFLQSNEIIS 643

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE---YIQKFANCG 477
           +  +     +  +D++F  +LK      +  +   +  +  ++ ++Y+      +     
Sbjct: 644 IFNVLSAFDNHLNDIAFTSLLKGNYVISNFSEDLLLKIRCDDSISMYDNVLNYIESKQKY 703

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFT 536
             +    I Y HE+     + S  +         +      S   G + +  ++  L   
Sbjct: 704 YQELSTFIDYYHEMRQYFNYHSVKEGLNKFYQDSEYLSFLASLVNGAQRVANMELLLQKM 763

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTG 594
              +  S  S+     E+ +    +  A  +  + N V  MT+H +KGLE P+VF+ +  
Sbjct: 764 DEMKNESLHSIVCKFDEMMKNGVNMSPAMVSSNDDNVVSFMTIHKSKGLEFPIVFVSNLQ 823

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK-------KSTQEEY 647
           ++       +++     L       +       +N  +    K+ K         + +E 
Sbjct: 824 NKFNQQDARERIISDKQLGIAIKPRLSKQLGNYQNVFIEYENKYRKVIAKCQTNESIDEE 883

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNE 673
            R+ YV +TRAS +LI+        +
Sbjct: 884 MRIFYVALTRASQKLILTGLIKEPQD 909



 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 5/159 (3%)

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
            +   RG IIH +L+ +    +      I        +                  E+ + 
Sbjct: 1081 EATTRGNIIHSVLEHMDFNLDLDDNLKILKDIELYNQDEW-NIINKYYSHFKAFFESDVC 1139

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI-EHI 896
                S             +   +  II G  D I I+  N+ I +YKT         E +
Sbjct: 1140 KLMNSAKQL---YKEKSFSMMDEGQIIHGIFDAICINDNNVTIIDYKTDTLKKSTSNETL 1196

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
               H AQ+  Y+KIL   +P  ++  ++ Y++  K  II
Sbjct: 1197 INLHKAQMDYYKKILARVFPQANIQAIVYYLNIDKYIII 1235


>gi|148272377|ref|YP_001221938.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|147830307|emb|CAN01241.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
          Length = 1091

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 111/883 (12%), Positives = 231/883 (26%), Gaps = 151/883 (17%)

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L   ++E K +  ++++ D +     + ++      +  +  +    +L+DE QDTS++
Sbjct: 242  DLAVRFQEEKTRRGLVEYSDQVAFALAICER---VPQVVAEHRKRFRVVLLDEYQDTSVV 298

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q  ++ +L                + AVGD  QSIY + GA    + R           A
Sbjct: 299  QTRLLSTLFG-----------GTPVMAVGDPHQSIYGWRGASAANLARFGADF-APTGAA 346

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  S+R+ A +L   +++      A  +        R         G + + 
Sbjct: 347  SADVPVYALSTSWRNPASVLGAANRIVEPLTAASRIP-----VARLEPRPDAGDGRLDVA 401

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                          A+ +A   A  +                  
Sbjct: 402  Y----------------------EETVADEAASVAAWFADRLRQTGSDG----------- 428

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            + +   +L R  K     T        D  +         L D  A+ DL+ + R +   
Sbjct: 429  RPRSAAMLCRSLKTIEPFTTAL----ADRGVPFRVLGLGGLLDQPAVVDLVCVLRVLHDP 484

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------------ 479
                  V +L    +     D+  +        +     +  A                 
Sbjct: 485  TAGSELVRLLAGARWRIGTKDVHALSRVASWLMSRDHAQKPLAEEVRDGLRASVVPDEVG 544

Query: 480  ----------------------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                                        + +   + +  L          D  T++    
Sbjct: 545  SVVDALDFVVDARDGHTALAGFSADGLARLRAAGRQLQVLRSRVG-LDLVDLVTVVQQEL 603

Query: 512  KGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSS-LQELISEL---EQYPPTIKRAHS 566
                +  +          L+ F     R  Q   +  L   ++ L   E+      R   
Sbjct: 604  LLDIEVAANETDPLGRASLEAFTEQVARYLQGDSAGTLGPFLAWLAEAERRDNLAPRTEE 663

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM-------HIMPSLNDDPGIP 619
                 V+I+T+H +KGLE  VV +             +K               D   +P
Sbjct: 664  PEPGTVQILTIHGSKGLEWDVVAVPRMVEGELPGTLREKRGWVAFGALPFEFRGDSAELP 723

Query: 620  IWIPQSKSRNNIVSDLIK----HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                +        ++ ++     L++    E  RL YV +TR    L++     ++ +K 
Sbjct: 724  SLAWRGAETQKEFAEAMEAFGEELEERNAAEQRRLAYVAITRTRSDLLLSGSFWSTQQKP 783

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                 +   +                   N  E  +   +   P   P E          
Sbjct: 784  RGPGAFLREIQQVGLIAPDALPEAPELEENPLEPGSARVAWPLPPLGPREARVRAASDAV 843

Query: 736  EQKIP----------------KKLFSPIKNDINEPYILNPST--------IDTKGKTNLE 771
                P                +   +     ++ P  +  S              +    
Sbjct: 844  ADADPGAETVWTRDIDLLLAERDARARDAELVDLPTRIPASRFKDFVSDPAGVAARLRRP 903

Query: 772  SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKNAKLWPAKEYKNLLLSITR 830
                  +    G + H  ++           + I +     +A        +  L  +  
Sbjct: 904  MPERPYRQTRLGTLFHGWVE--ARYGPAGTADVIDASGVELDADPTEPPVEQEDLDRLRA 961

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
              E           S     V  +I+      ++  +ID + +      + ++KT     
Sbjct: 962  TFEASEWA------SRKPEEVEVEIHMELAGQVVICKIDAVFLIDGRYRVVDWKTGRTPK 1015

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPK 931
               +        QL++Y              +     +V+E +
Sbjct: 1016 DAAD--LELKQLQLALYRLAFAKWRGIDPDLIDAEFYFVAEGR 1056


>gi|227875854|ref|ZP_03993980.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
 gi|306819135|ref|ZP_07452849.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239]
 gi|227843602|gb|EEJ53785.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
 gi|304648111|gb|EFM45422.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239]
          Length = 1213

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 148/987 (14%), Positives = 290/987 (29%), Gaps = 163/987 (16%)

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
            +++         +  LL+S  L +   P K              ++ L         +  
Sbjct: 239  MKKLYADFLATAQRELLASQKLDEALEPLKAAKKAAKAANDKQREKALGAEITNL-DLPL 297

Query: 113  RFNTYKMFKSTLASLTL---AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                 K  + T+  +     A  +   +   K +    DF D      +LLKK    A I
Sbjct: 298  TSQAKKDLERTVEVMRFGVDAVEVIRAFNTRKAQLRFADFSDQTREVVELLKK---VANI 354

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                 Q    +L+DE QDTS+ Q + + +L                + AVGD  Q+IY++
Sbjct: 355  SQSYQQRYQLVLLDEFQDTSVAQLKYLSALF-----------RNHAVTAVGDPNQAIYAW 403

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD----KVFSIPENAQ 285
             GA    +        K  ++   K + + L  S+R+ A IL V +    ++        
Sbjct: 404  RGASAASI----EEFPKYFSDNPSKVASLTLRTSWRNDAAILNVANCIASEIAEQNRTEG 459

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ-QESWTSYFDSLPQESSASI 344
                     +  R      +G V     +    ++Q      E+W    +   ++++A  
Sbjct: 460  KNENFIMPDLSLRPGASPDLGRVYGAPFLTDTDEAQAVANFLENWRKDLEQAVEKTAAWQ 519

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A R+                            VL RK+    ++  + R L +   I  
Sbjct: 520  AAGRVGQ------------------PPSLPTAAVLCRKKS---IMLPILREL-SRRGIPF 557

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                R        +  + A    +++ ++  S + +L    F  S +D+  I      T 
Sbjct: 558  QLQARESALLDPGVVLVRAALNVVVNPQNSGSLLLLLN--RFRLSREDLEAISKAAGRTV 615

Query: 465  TVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
              ++ + K       +  G  +   + + I +L     + +P     L         +  
Sbjct: 616  LPFQEVMKSQIGASVSQPGRERLAILREIIAKLEKHVSYATPLQMAKLAAKLLGLDIEQR 675

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI----KRAHSANHNEVRI 574
                    +    FL+     E++  ++L+  +  L+          +   + +  +V++
Sbjct: 676  IPGTPYQEEAFTIFLSIIEDFERSGQATLRAFLEWLDVAESEEKEVGQFQEAVDTKKVQV 735

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDDPGIPIWIPQSKSR 628
            +TVH AKGLE   V +       F     +           P   D   +P +    +  
Sbjct: 736  ITVHAAKGLEWDYVAVPGLSEGNFPDNRTEIWLKNYFVLPYPLRGDRDSLPQYEINLRQL 795

Query: 629  NNIVSDLIKHLK------KSTQEEYNRLLYVGMTRASDQLIICKHSNTS----------- 671
                       +          +E   L YV  TRA   L +                  
Sbjct: 796  GEKDRSRKFLEQYDGVRTLHHLKEEANLAYVAFTRAKSHLFLSMSWFKGCNVNTAKPGAF 855

Query: 672  -----------------NEKKSNQRTWYDMVYDSFHND------ERVKKIKLTNSINKDE 708
                             N+  +   +   M    +  D      E  +            
Sbjct: 856  FRVLLGEDAKLFCMEKPNKGMTLVNSQEFMHLPDWLGDINPCFTEPEEANPNVQEFEAGL 915

Query: 709  WIAYEWSTHHPE---------------------------NTPLEREETIKQLMDEQKIPK 741
            W A  W    PE                               +  E+        ++ K
Sbjct: 916  WQAPSWLDLPPESIRPETFPWDVAGLQRSYQMVTVAAENPPDSQALESAIPGSLSWRVWK 975

Query: 742  KLFSPIKN----------DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
               +P                    L+ S+ D   +      L  +     G+I+H  + 
Sbjct: 976  LYNAPRPRLDSSTLLRQIAATSVVKLDESSDDFMLQKLRPLPLPPSPAARLGIIMHAWIA 1035

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851
                 P     +   +    +++L      +       + L+   +          E S 
Sbjct: 1036 QQLGQPTLDIPDGSEATLDADSRLKLDCYRQTWEN--LQFLKGKAVMDI-------EHSG 1086

Query: 852  SGKINCPKKDIIISGRIDQISISQ--QNIFIFEYKT-HHHVPQEIEHIPYTHIAQLSIYE 908
            S  +    +   +  RID +   +     +I ++KT  H  P + E     ++ QL IY 
Sbjct: 1087 SLVVGEGTEGFEVPLRIDAVFQERSCGTTWIVDWKTASHPHPPQYE----RYLHQLGIYR 1142

Query: 909  KILKDSYPNK---SLVCLLIYVSEPKV 932
                 ++P      + C  +Y+ E + 
Sbjct: 1143 LYWLQTHPELDSQDIQCAYVYLKEGET 1169


>gi|113970112|ref|YP_733905.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-4]
 gi|113884796|gb|ABI38848.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-4]
          Length = 1274

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 130/985 (13%), Positives = 290/985 (29%), Gaps = 163/985 (16%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
            P + +    L              +L +  L++    +  +I         D  E+L   
Sbjct: 262  PKLAEMFDQLDNFLAFGHGLPPLKVLEALSLSELKLNKGGVIPSASEAPLLDHMEQLAAL 321

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
             +                      +  + ++  + + K++  VL  +DL+      ++  
Sbjct: 322  INAIKPAF--------------LYSAKQGISERFAKQKQQKNVLTPDDLLTTLAAAMQAN 367

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR--------- 214
                 +   +       LIDE QDT  +Q+ +   + +          +           
Sbjct: 368  P--DTLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGVDTQDPAAAEPKPRTDSK 425

Query: 215  -TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             +L  +GD KQ+IY+F GA+    +  +R  +              L  ++RS+ +++  
Sbjct: 426  LSLLMIGDPKQAIYAFRGADIYTYIEARRQTEAHY----------FLDTNYRSSRNLVVG 475

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            V+ +F+   +           ++   +       V+      +          +  +   
Sbjct: 476  VNHLFAQHSDPFISQSIPFDPVK-TPASAAAKQLVEHAPNSAALR-------LKLLSEGD 527

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR-VIQAKDILVLVRKRKDTPLITFL 392
              L + S+   LA   A  I+ ++           +  + AKDI +LVR R +  ++   
Sbjct: 528  TGLNKASARQTLAEDTAAEITRLLTQAANGQCSTPKGPLIAKDIAILVRDRNEAAVMKTA 587

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                 +  +I  V   R  + + +  +++  + R + S +D+ +    L + L  +  + 
Sbjct: 588  L----SKRQIGAVFLSRDSVFETVEAREMALILRALASPKDERALRSALATALLGYRAEQ 643

Query: 453  IFKICTQRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            I        + + + E+  +       +     ++   +    +A+        +     
Sbjct: 644  IHAFNQDEEQRQRLLEHFFELHQIWQKRGIMPALLSLANATQMVARLLHSPILPSTDQAE 703

Query: 511  KKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTI 561
            +    Q  +  G   +     L E L      +      +  L++  EQ           
Sbjct: 704  QDAAAQLEASNGERRLTDFRHLAELLQQ----KATEIDGISALLNWYEQQLIDNTGTDEQ 759

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +    +  N V+I+T+H +KGLE PV F+        + +    M    +  D     +W
Sbjct: 760  QLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSLARDNRRRPTPMLYHRTNADGAQELVW 819

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC---------------- 665
              +            +  K+ T  E  RLLYV +TR      +                 
Sbjct: 820  DLEGTDEG------WEQAKQETLAEDLRLLYVALTRPVYLCYLYIANHSRMLKAGLKSQL 873

Query: 666  ---------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK---------- 706
                       ++T  +    Q     +V     +   +    + ++I+           
Sbjct: 874  HETAIGYLLGITDTDCDFSRLQNAAKALVAGLESSPPAISIEVVADNIDANKLHTGGSDS 933

Query: 707  --------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                           W                     + ++   L +   N   +P    
Sbjct: 934  QTLSARKVSRQYRTPWRVGSYSGLVKNAPHAKATPGADDEVNAVLGTDTTNSAADPLWAA 993

Query: 759  PSTID------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFITSYCT 810
            P   +            L +  S  +  N G  +H +L++I     P    +    +   
Sbjct: 994  PLWQEALLQEVEPQAQPLLNRFSFERGANAGSFMHLVLELIDFTQAPIDLPRELPKAMLQ 1053

Query: 811  KNAKLWPAKEYKNLLLSITRL----------LENPMM--TTAMSCDSYSEVSVSGKIN-- 856
                       ++  L + +           L NP +         +  E+     +N  
Sbjct: 1054 YGIAPVWQPILEDWYLEVLQAPLALMAQDNQLINPELCLAALAPQHTLVEMEFYLPLNRL 1113

Query: 857  -------------------CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI- 896
                                 +   ++ G ID     Q   +I +YK++H       +  
Sbjct: 1114 KDTELNQLLGQFGYDTELQFEELQGMLKGFIDLTFEYQGKFYIADYKSNHLGDNIQAYHH 1173

Query: 897  --------PYTHIAQLSIYEKILKD 913
                     + +  Q  +Y   L  
Sbjct: 1174 SALKQAISDHRYDLQYILYSLSLHR 1198


>gi|261213209|ref|ZP_05927492.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC341]
 gi|260837627|gb|EEX64321.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC341]
          Length = 671

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 96/664 (14%), Positives = 221/664 (33%), Gaps = 135/664 (20%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRLLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +        M K       L  +    Y++  +    LDF+DLI+    LL+  +    +
Sbjct: 146 MLTPPQAKAMAKGEQQ--QLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKAL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S      +                                     +   ++    A R+
Sbjct: 303 FSELAEGEKL-----------------------------------KVILANNEDHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I          ++      + +D  +L R    + LI           ++    +  
Sbjct: 328 TAEI---------IAHKFLNRTEYRDYAILYRGNHQSRLIEKSL----TQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++ 
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFA 434

Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               +   +++  +   A+  +  +    ++   +          
Sbjct: 435 ASFELGLEQHLAGRGLDNLRRFTEWLVAIADNAERGNSVEAVRALVRDIRYEDWLYETSA 494

Query: 520 --RFGNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEV 572
             +     +  + +  ++ + + +          L+E++  L       +   + + + V
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNPDQEEKTLKEVVQRLTLRDMMERGEENDDSDAV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V+L+     +  H+                               
Sbjct: 555 QLMTLHASKGLEFPYVYLIGAEEGILPHQTSID--------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +   EE  RL+YVG+TRA  +L            +  + +    + +   + 
Sbjct: 588 --------EENVEEERRLMYVGITRAQRELTFMVCKERRQFGELLKPSQSRFLDELPQDG 639

Query: 693 ERVK 696
              +
Sbjct: 640 IEWE 643


>gi|229527316|ref|ZP_04416709.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 12129(1)]
 gi|229335324|gb|EEO00808.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 12129(1)]
          Length = 671

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 220/664 (33%), Gaps = 135/664 (20%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRLLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +        M K       L  +    Y++  +    LDF+DLI+    LL+  +    +
Sbjct: 146 MLTPPQAKAMAKGEQQ--QLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKAL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S      +                                     +   ++    A R+
Sbjct: 303 FSELAEGEKL-----------------------------------KVILANNEDHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I          ++        +D  +L R    + LI           ++    +  
Sbjct: 328 TAEI---------IAHKFLNRTDYRDYAILYRGNHQSRLIEKSL----TQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++ 
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFT 434

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               +   +++  +   A+  +  +    ++   +          
Sbjct: 435 ASFELGLEQHLSGRGLDNLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSA 494

Query: 520 --RFGNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEV 572
             +     +  + +  ++ + + +          L+E++  L       +   + + + V
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V+L+     +  H+                               
Sbjct: 555 QLMTLHASKGLEFPYVYLIGAEEGILPHQTSID--------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +   EE  RL+YVG+TRA  +L            +  + T    + +    D
Sbjct: 588 --------EENVEEERRLMYVGITRAQRELTFMVCKERRQFGELIKPTQSRFLDELPQED 639

Query: 693 ERVK 696
              +
Sbjct: 640 IEWE 643


>gi|253565411|ref|ZP_04842866.1| ATP-dependent helicase [Bacteroides sp. 3_2_5]
 gi|251945690|gb|EES86097.1| ATP-dependent helicase [Bacteroides sp. 3_2_5]
          Length = 1057

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 114/813 (14%), Positives = 253/813 (31%), Gaps = 99/813 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    +  ++N       L+ +TN LL +      S+++  KI   I +++ID
Sbjct: 337  VRLLTNIDEEVRQLNRENNRF----LLSDTNALLHQLVKDGDSSFVFEKIGTNIRNVMID 392

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  + L  +                VGD KQSIY +   +   +    + 
Sbjct: 393  EFQDTSRMQWDNFKLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLNKQ 446

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                            L  + RS  +I+   + +FS   +      +             
Sbjct: 447  LGYF------SIRTETLKTNRRSETNIIRFNNSIFSAAVDYLNEMYNKQLGSICEPLINA 500

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   Q      + +   +          +   + +++ +    
Sbjct: 501  YA--------DVEQESLRNKQQGYVKVEFLEPDEEHDYTEQTLISLGMEVEHLLQSG--- 549

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   ++  DI +LVRK K  P I              +V ++ F L   LAI  ++ 
Sbjct: 550  -------VKLNDIAILVRKNKSIPRIADYF---DKQLNYKIVSDEAFRLDASLAICMMLD 599

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
              R++   E+ +    +        +   +  + ++      +    ++           
Sbjct: 600  ALRYLSDPENRIVKAQLA-------TNYQLQILHSEYDLNSLLLHKAEELFPP------A 646

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             ++ + EL         ++    +    +  +        +    L  F +      Q+ 
Sbjct: 647  FLERMAELR----LMPLYELLEELFSLFELHR------IEQQDAYLFAFFDAVTDYLQSH 696

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S     I    +   + K   S     +RI ++H +KGLE   V L     ++ +  + 
Sbjct: 697  SSDPDSFIRYWNET-LSGKTIPSGEVEGIRIFSIHKSKGLEFHTVLLPFCDWKLENETNN 755

Query: 604  KKMHIMPSL--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            + +  +P     ++  I      S    ++      H +     +   LLYV  TRA   
Sbjct: 756  QLVWCVPQEAPFNELDIVPVNYSSAMAESVYRTDYLHERLQLWVDNLNLLYVAFTRAGKN 815

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            LII    +   ++ +        +  + +  ++    +    +        E        
Sbjct: 816  LII---WSRKGQRNTMAELLTGALPQAANKLDQEWDEEQVYELGDLCPSENEKKIDSGNK 872

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
               + E+    +       +                  S         L    SD++  N
Sbjct: 873  LTRKPEKLPINMESMHPDIE---------------FRQSNRSADFIKGLSEEESDDRFIN 917

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
             G ++H L   I    +   +  I         +   +  + +     +    P +    
Sbjct: 918  HGQLLHTLFSAIE--TKDDIEPAIQRLI-FEGIIGSKEAEEQIRSLTVKAFSLPEVQEWY 974

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
            S +    +     I    K ++ + R D++ +  + + + ++K               + 
Sbjct: 975  SGEWR--LFNECAIIYKDKGVLQTRRPDRVMMKNEQVVVVDFKFGKAN--------KKYN 1024

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
             Q+  Y ++L      K++   L YV E ++  
Sbjct: 1025 KQVKGYMQLLSRM-GYKNITGYLWYVEE-EIIE 1055


>gi|197120525|ref|YP_002132476.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196170374|gb|ACG71347.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 797

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 116/803 (14%), Positives = 226/803 (28%), Gaps = 139/803 (17%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + L PL     V   + + +  +             L  +      +++ 
Sbjct: 72  AAGEMRERLERLLGPLARELWVQTFHAFGARFLRREAAR-----AGLSPSFAIYDDDDQL 126

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+            + +  +++  +    K +  ++ +  +   D              
Sbjct: 127 RLVKGLLSELGLDEGEGLTPRQVLSQIDRWKNQALRAAEVKVAGLDPETAR--------- 177

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              AK +   YE+A  +   +DF DL++    LL++    A +R +      ++L+DE Q
Sbjct: 178 ---AKEVYHRYEQALARAGAVDFGDLLLRPVRLLEED---AALRARWAGRFRYLLVDEFQ 231

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q+ +++ LT             R +  VGD+ Q+IY + GA+   +L        
Sbjct: 232 DTNPVQYRLLQLLTG----------PRRNVCVVGDDDQAIYRWRGADVSNILGFDGDFP- 280

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +++L  ++RST  IL     V S     +                     
Sbjct: 281 -------GTKVVKLEQNYRSTRTILDAAHAVISRARRRREKRLW---------------- 317

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                +     D   +       A RIA  ++   G  T     
Sbjct: 318 ------------TESGAGAPLALLVGEDEHAE-------AERIARAVAAERGRGTSGD-- 356

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   +I VL R    +  +    R      +I  V        +   ++D  A  R
Sbjct: 357 --------EIAVLYRTNAQSRPLEAAMRA----ARIPYVIVRGTSFYERAEVRDAAAYLR 404

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGIS 479
             LS   DL    ++  P        + ++            E     + + +       
Sbjct: 405 LALSPASDLDLERVVNRPPRGIGGKTVERLRAHAAARGLPLVEAVAERDAVAELKPAARR 464

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFT 536
                   +  L               +L       +      +   E  + L E +   
Sbjct: 465 ALAEFHALVTGLAADVPALDAGVAVQEVLKRSGMLSRLEEEHTDEAVERAENLAELVAAA 524

Query: 537 LRNEQN----------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
              +++                 L   LEQ     +   +     V +MT+H AKGLE  
Sbjct: 525 REFDESIAGEPPPGDPEEVRPPPLARFLEQIALLGEADAATPEGRVALMTLHAAKGLEFE 584

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VFL         ++                               +D     +  + +E
Sbjct: 585 AVFLAGMEDGTLPYERP----------------------------WADQTSSERDESLDE 616

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YVGMTRA  +L I          ++     Y  +  S    +   ++       +
Sbjct: 617 ERRLCYVGMTRAKRRLTISLARRRIGYGENGPS--YRNMEPSRFLRDLPPELFGDAVARE 674

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                   +        + R     +     ++                   P    T  
Sbjct: 675 VRAREAAQAAPVARPPTIRRLPGALEGEPHIELDGDDLPQPPAPAPRARAAAPRGEPTVD 734

Query: 767 KTNLESLLSDNQTFNRG-LIIHK 788
            +  +   +    F+RG  + H 
Sbjct: 735 YSFDQRGDAGAAAFSRGERVAHA 757


>gi|284992622|ref|YP_003411176.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065867|gb|ADB76805.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 1120

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 129/1034 (12%), Positives = 257/1034 (24%), Gaps = 186/1034 (17%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R G+             W      VS     +     T   T+      L  A +    +
Sbjct: 157  RIGVEPGAGVLGP-AMCWGQAASVVSGWTGDMDDVQLTPLTTVE---DVLALAGELGEHD 212

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
                 L ++    +         +        + E L + +     +             
Sbjct: 213  ITADRLRAWTAQLERRIAGYPDAKGKRGPYRPVLEMLARQRARVALL------------- 259

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                     L   +E  K+    +D  D +     +      +  +  +       +L+D
Sbjct: 260  --------PLVEAFEARKRAAGAIDHSDQVALAARIA---VTAPEVGRRERARWRIVLLD 308

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS+ Q  ++ +L           ++   + AVGD +QSIY + GA    + R  R 
Sbjct: 309  EYQDTSVGQLRMLEALFG--------RTTGHAVLAVGDPRQSIYGWRGASAGTIERFDRT 360

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                     ++   + L  S+R+                       D        +    
Sbjct: 361  FP---GVRSREAQRLTLATSWRN-----------------------DGAVLAVANAVAGL 394

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                      +     +                 +  +  + A                 
Sbjct: 395  LPAPEVPLPDLAPAPSAGHGLVTAGLYPTVAQETEALADRLAACW----------RGEDP 444

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                +   +     VLVR RK  P I    R       + V       L +   + D++A
Sbjct: 445  VLPPRADGRPPTTAVLVRTRKQLPGIAAALRA----RGLPVTVVGLGGLLEVPEVSDVVA 500

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------------------E 462
                ++      +   +L    +     D+  + ++                       E
Sbjct: 501  TLTVLVDPSAGDAMGRLLTGARWRIGPRDLAALESRARALVHSRKPDREDDDDTAPRPSE 560

Query: 463  TETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPH--DFFTLILGAKKGR 514
              ++ E          F+     + + +   +  L        P   D    +LG +   
Sbjct: 561  RGSIVEALDDLGDPSAFSPAAYRRLRRLAAELAHLRGRLGESLPDMVDDVARVLGLETEL 620

Query: 515  QQFISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTI----KRAHSANH 569
                          LD          E     SL   +  L               + + 
Sbjct: 621  ASAPGVSPGSARAHLDALHAVAAEFTELAELPSLPAFLGYLRDAEERERGLEPGEVAVDP 680

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR- 628
              ++++T H+AKGLE  VV +    +  F  +       +      P       + +   
Sbjct: 681  ESIQLLTGHSAKGLEWDVVAVPGMTADQFPSRTDTSDSWVKDPGAVPVDLRTTDREELPQ 740

Query: 629  --------------NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                             + D ++  K+  + E  RL YV +TRA   L+          K
Sbjct: 741  LRLPVPGSGDQAAVRAALEDYVEEWKRFGEAEEIRLGYVAVTRAKHLLLCSGSWWREGVK 800

Query: 675  KSNQRTWYDMVYDSFHND------ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE- 727
             +      D V  +             +  +   +   +EW    W              
Sbjct: 801  PNGPSVLLDTVRRACSAGAGVVVAWAERPEEGATNPALEEWPVGMWPADPLSPPRRRALT 860

Query: 728  ---------------------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                                       E   +  D     ++  +    ++  P  L+ S
Sbjct: 861  AAAELVAGAAPHPLDAAAVLGTGDPEVERWVRDADLLLRERRRIARPTVEVPLPSHLSVS 920

Query: 761  TIDTKGKTNLE--------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
             + T  +   E           +      RG   H  L+          +  +      +
Sbjct: 921  ELVTLRRDPAELARRLRRPMPAAPAPLARRGTAFHAWLEE---------RFSVARLLDLD 971

Query: 813  AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
                   E           L+   + +  +      V V      P   + + GRID + 
Sbjct: 972  ELPGSGDE-SAAPDGALTALQEAFLASPWAD--RQPVEVEVPFETPLGPLTLRGRIDAVF 1028

Query: 873  IS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSE 929
                    + ++KT               +A    Y          P + +     +V+ 
Sbjct: 1029 DDGGGGFEVVDWKTGPPPMGAELAAAAVQLA---AYRLGWSRLTGVPVERVSAGFHHVAA 1085

Query: 930  PKVFIIPQNKLNKA 943
                  P + L++A
Sbjct: 1086 GVTVR-PVDLLDEA 1098


>gi|159901112|ref|YP_001547359.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894151|gb|ABX07231.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 758

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 106/687 (15%), Positives = 210/687 (30%), Gaps = 130/687 (18%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +         ++       F  +++S    +       YE+    N  LDF+DL++ T +
Sbjct: 140 RSIHARISAAKNEMIGVAEFARSVSSYFDEIVLRCYERYEKQLLANNALDFDDLLLKTVN 199

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           L +       +  +  +   H+++DEVQDT+ +Q+ +I  +           +     F 
Sbjct: 200 LFEYHPD---VLARYAERYVHVMVDEVQDTNRVQFSLINQV----------GAGHNNYFL 246

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           +GD +QSIY++ GA    V   +               II L  ++RST  IL V   + 
Sbjct: 247 IGDIQQSIYAWRGARLANVREFEEA--------HPDVQIIPLEQNYRSTQPILDVAQSII 298

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
               + +                                   Q + +  S    +D   +
Sbjct: 299 DAAYDRR---------------------------HTTKIWTDQQDGELVSLVEAYDHNEE 331

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  AR +A  I  + G +              D  V+ R    +            
Sbjct: 332 -------ARWVADEIMRIRGREGR---------SLDDFAVMYRTNAQSRAFEEAM----I 371

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-IC 457
              +           +   IKD++A  R I +  D++S + ++  P  +  +    + + 
Sbjct: 372 SRNLRYRLVGGTRFYERKEIKDVVAYLRIIHNPHDEVSLLRVINVPGRSIGDRTQQELLQ 431

Query: 458 TQRHETETVYEYIQKFAN----------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             R+   ++++ ++  A              +  +   K +  L  +       +    +
Sbjct: 432 WARNLDVSIWDALELLATNEAQSPPISGRARNAVEQFQKLVASLRDLRHDLMLGELIQRL 491

Query: 508 LGAKKGRQQFI----SRFGNEVIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIK 562
           L     ++  +       G E  + + E  N ++          L   + E+        
Sbjct: 492 LERVPLQELLVAEYGEEEGAERWENILELQNVSMEYLALPTEDQLPRFLEEVALVSDVDS 551

Query: 563 RAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
              +      V ++T+H AKGLE PVVFL      +  H                     
Sbjct: 552 LDSNKEREPGVTLITLHQAKGLEYPVVFLAGLEEGLLPHGRSVDDP-------------- 597

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                                + EE  RLLYVG TRA  +L +      +   +++    
Sbjct: 598 --------------------ESIEEERRLLYVGTTRAKQRLYMLYAFKRATWGRTDITIP 637

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              + D   +   +++             A +W +  P+ T   +  T         +  
Sbjct: 638 SRFLGDIPKDL--LQRTPTREVKQMPVHAASQWQSSTPQRTRGTQPST-------SSMWS 688

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKT 768
               P++    E      S        
Sbjct: 689 GASGPVRPKRPEREPSAASYSAGDKVR 715


>gi|108756911|ref|YP_630227.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622]
 gi|108460791|gb|ABF85976.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK
           1622]
          Length = 691

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 102/592 (17%), Positives = 191/592 (32%), Gaps = 118/592 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   +   Y+ + K    +DF+DL++    LL++      +  K  +   ++L+DE QDT
Sbjct: 168 ITHMVYPDYQLSLKAQGSVDFDDLLLLPARLLREHPD---LYEKYTKRFRYLLVDEFQDT 224

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q E+++ L              R + AVGD+ Q IYS+ GAE + +L   R+     
Sbjct: 225 NTAQLELLKLLAG----------RSRNVCAVGDDDQCIYSWRGAEVRNILDFDRLFP--- 271

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    + L  ++RS   +L   + V +     +                       
Sbjct: 272 -----GGKEVRLEQNYRSVQTVLDAANAVIAKNPERKAKQMW------------------ 308

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                     D     + +  T   D           AR +A+ I   +           
Sbjct: 309 ---------TDRTGGTKVKVVTCPNDEEE--------ARFVAHEIQKHMALG-------- 343

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             I A DI VL R    +  I    R       I           D   +KD++A  + I
Sbjct: 344 --ISADDIAVLYRTNGQSRPIEETLRE----KNIGYEVVGGSEFFDRREVKDVIAYFKVI 397

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKF 481
           +++ D++S + ++  P     +  + ++    R E  T++  ++             ++ 
Sbjct: 398 VNKLDEISLLRIVNVPSRGIGDVTMERLNVHARGEGVTLWTVMKKATDYEDLPPGAGARV 457

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV-----LDEFLNFT 536
              +  +       +     +    +L     R+   +   +          +D  LN  
Sbjct: 458 MDFVDLVERYRAAYEHGQLANVTRKLLEEIGFREATRAHATSATAADKKLKGVDGVLNSL 517

Query: 537 LRNEQNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              E+      SL   ++ L       +      +  V +MTVH +KGLE  +VF +   
Sbjct: 518 ENFEKREGPKASLPTYLNRLSLDTRQEEEEVPGANRRVTLMTVHASKGLEYRLVFFIGME 577

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +  H  +                                    +    EE  RL YVG
Sbjct: 578 EDLMPHGGM----------------------------------QGEAQNLEEERRLCYVG 603

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           +TRA + L + + +      K   RT    + D       V ++        
Sbjct: 604 ITRAKEVLYLTRAATRVKRGKEVPRTPSRFLEDLPPEVIEVVELDAPRQGPP 655


>gi|326383310|ref|ZP_08204998.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198060|gb|EGD55246.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1117

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 137/1067 (12%), Positives = 273/1067 (25%), Gaps = 216/1067 (20%)

Query: 5    FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
              +    +      +LW L +  V+     +  +    + T     +   + ++     +
Sbjct: 136  LPVEPTATLLS-ETELWQLAFSVVASWPGELKTAKVPASVTE-AVLRLYSEMAEHLVGVD 193

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
              S   +       T  K    +    +     + +   + E I +              
Sbjct: 194  ELSAAGADLYRMIDTLPKGPGQRAEPSQKLRAYQAVMDERRELIPLVVALR--------- 244

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                          EA      LDF   +     L+ +      +       I  +L+DE
Sbjct: 245  --------------EAMSAQGALDFGSQMSLAARLVAEHPE---VVDAERAGIKAVLLDE 287

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT   Q  ++ SL     +G         + AVGD  QSIY + GA    + R  R  
Sbjct: 288  YQDTGHSQRILLSSLFGGHAIGG---RRAIAVTAVGDPIQSIYGWRGASAANLPRFARDF 344

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
             +      +     EL  S+R+    L + ++                     R      
Sbjct: 345  PR---PDSRDAHRRELLTSWRNCRGALYLANQTSEELRRRG------VPVSVLRPRPDAP 395

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             GTV+L        +                             IA  I +       ++
Sbjct: 396  DGTVRLALTETVIDER--------------------------EWIADCIEDY------YA 423

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
              ++  +      +LVR+ +D+               +         L     I D++A 
Sbjct: 424  TAQRDGVAPPTTAILVRRNEDSAP----LAAELERRGVPAEVVGIGGLLHVPEITDIVAT 479

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY--------------- 469
             R +       + + +L    +     D+  +  +  E                      
Sbjct: 480  LRLMADPMAGTAAMRLLTGARWQLGAADLAALWRRARELAAGAGAPTTGAVTSREALDDA 539

Query: 470  ------------------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
                                      +++  G  +     + +  L          +   
Sbjct: 540  LDAALPGEAVDSAGLCDALADPGDQSRYSAAGFERIVTFGRQLDGLRRRLGQ-PLPELVA 598

Query: 506  LILGAKKG-----RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
             +            +    R      + LD F ++       S ++L  L++ L+     
Sbjct: 599  DVEQTIGVAVEAQIRARRMRGEVTGREHLDAFADYVTHYADRSGATLPGLLAFLDAAEVV 658

Query: 561  IKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI-------- 608
             K             V+I+TVH AKGLE  VV L     ++F     +   +        
Sbjct: 659  EKGLEAGQVEVAQQRVQILTVHAAKGLEWDVVALPHVADRIFPSGKAETTWLGSPRELPA 718

Query: 609  --------MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                           P     +   K     + D  + + +   EE  RLLYV +TRA  
Sbjct: 719  ELRGDLSRDGDEGFPPLDLTEVADRKELEAAIDDHKEAIGQRRLEEDRRLLYVALTRAKQ 778

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK---------------KIKLTNSIN 705
             L++  H  +    +    + +     +   D                        +   
Sbjct: 779  TLLVSAHHWSETGDRPRGGSEFYTELAALVADAAAGGAAESAEASAFRIDVDAPPPDPEA 838

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS-------------------- 745
             +     + S   P +   ER   +    +     +   +                    
Sbjct: 839  TNPLTERQISIGWPVDLLGERRAPMVAAAELVDSMRAERALFAVADDEPADADAREWRRE 898

Query: 746  ------------PIKNDINEPYILNPSTIDT--------KGKTNLESLLSDNQTFNRGLI 785
                            D+  P  L+ S +            +         N    RG  
Sbjct: 899  VQVLLDERAQAVDPMVDVELPGHLSVSQLVELDSDQEAFAARLRRPVPYRPNPMARRGTA 958

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
             H  ++         R+   T     +     A      +     LL    + +  +   
Sbjct: 959  FHAWVE---------RRFGATRLLDVDELPGAADAVAGAVEDDLTLLRAKFLASPWAD-- 1007

Query: 846  YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
             +   V           ++ GR+D +    +   + ++KT                 QL+
Sbjct: 1008 RTPQEVEVGFETVIGSTVVRGRMDAVFADGEGALVVDWKTGAVPEP---ARRAPLFIQLA 1064

Query: 906  IYEKILKDS--YPNKSLVCLLIYVSEPKVFI---IP-QNKLNKAFAE 946
             Y          P + +    +YV          +P  ++L +  A+
Sbjct: 1065 AYRIAWSQLSGVPLEKVRAAFVYVRHDYTLEPADLPGPDELAQILAD 1111


>gi|239908800|ref|YP_002955542.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239798667|dbj|BAH77656.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 617

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 96/566 (16%), Positives = 184/566 (32%), Gaps = 125/566 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YEE K    + DF+DL++  +  L     +     K      HIL+DE QDT+
Sbjct: 157 TAMVFKEYEEQKAIRYLYDFDDLLLQAHRFLAHEGGAE----KYHDVYPHILVDEYQDTN 212

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q  V+++L  +        S   + +A GD+ QSIY+F+GA    +LR K+I      
Sbjct: 213 PAQLAVLQALIAE--------SGRGSFWACGDDWQSIYAFNGASIGNILRFKQIFP---- 260

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I L +++RST  IL    K+    +        +              G   
Sbjct: 261 ----SAQEIVLNVNYRSTPAILAACQKLIDHNQRKIPKELIAHKP----------GGNHD 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L+       + +                        A  +A  I ++  +D         
Sbjct: 307 LFVIDTFNEEEE------------------------ACLVANEIKHLHLSDGTA------ 336

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D+ VL R    +     + + +     I    ++         ++ L+   RFI 
Sbjct: 337 ---YSDMAVLYRANFQS----EILQNVFVRAGIPFYIDNGMSFYKRREVRILLDYLRFIE 389

Query: 430 SQED---DLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC---GISKFQ 482
                  D S   ++ +P     +  + ++       + ++Y+ +++ +           
Sbjct: 390 DPGSVVGDESLQRIINAPNRYLGKKFMEQVAGVANEASCSLYQALREMSFDSPYIRRNVH 449

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLR 538
             ++ +   I       P +    +       +           N+ +  L++ L    R
Sbjct: 450 EFVRLMESFIQNEGEMGPAEVLAKLRQRLDYDRFVTDKDIPSPDNQAVLNLNQLLQSAAR 509

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 +S+ E ++ +             + + V++MT+H AKGLE PVVF+V     + 
Sbjct: 510 Y-----ASISEFLTYVATVEDETCSR---DPSGVKLMTIHKAKGLEFPVVFVVGLVEGIM 561

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             K                                           EE  R+ +V ++RA
Sbjct: 562 PTKRG---------------------------------------DLEEERRICFVALSRA 582

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDM 684
            D+L +    N   +         +M
Sbjct: 583 MDRLYVTYSHNHLGQPAKRSIFIDEM 608


>gi|194246823|ref|YP_002004462.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali]
 gi|193807180|emb|CAP18621.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali]
          Length = 708

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 100/547 (18%), Positives = 184/547 (33%), Gaps = 117/547 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +  +Y++  + N +LDF+DLII T  LLKK +    I+     +  HILIDE QDT  +Q
Sbjct: 170 IYNNYQQFLENNNLLDFDDLIIYTYKLLKKHE---NIKNYFQNKFTHILIDEFQDTDFLQ 226

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++++ L          ++    +FAVGD  QSIYSF GAE        +          
Sbjct: 227 YQILKLL----------NTKNNYIFAVGDPDQSIYSFRGAEITNNKLFLKDF-------- 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            K   + L  ++RST +IL   + +                  +   S  G+   V  + 
Sbjct: 269 -KAKTLILDENYRSTNNILDKANLLIQNNSFYG--------FTKKLQSFFGKGHKV--FP 317

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
           ++    D + +                         +A  I N+I  +            
Sbjct: 318 KMFENDDQEVD------------------------FVAEKIKNLIKKE---------KCN 344

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +L R       +      +     I  +        +   IKD++A  + ++  +
Sbjct: 345 YEDIAILYRLNG----LEKKFEKIFLKKNIPYIVFGNINFFNRKEIKDILAYIKILIDPK 400

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE---YIQKFANCGISKFQHVIKYI 488
            D     ++  P     +  I  +    + +  +++E    + K          +    I
Sbjct: 401 QDFYLKRIINVPSRKIGKKTISNLEIISKEKNISLFETLILLCKEEKKCNKNLLNFKNLI 460

Query: 489 HELIHIAQ---FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
            E+I       F    +    I       +    +  N   D L  ++            
Sbjct: 461 LEMIKKINSNSFLKLENIIDYIDQKVNYSKSINKKKINPENDNLT-YIEDLKSFFTKKKD 519

Query: 546 SLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             ++   + E      + + +      N N+V + T+H  KGLE  +VF+V     +   
Sbjct: 520 QDKKKTVKQELIDILDQISLNNEVKKDNKNKVTLSTIHKIKGLEFKIVFVVYFEENILP- 578

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                             L  +   +  EE  R+ YV +TRA +
Sbjct: 579 ----------------------------------LKNNKYNAPLEEERRIAYVAITRAKE 604

Query: 661 QLIICKH 667
           +L +   
Sbjct: 605 RLFLLGA 611


>gi|315651806|ref|ZP_07904810.1| ATP-dependent DNA helicase PcrA [Eubacterium saburreum DSM 3986]
 gi|315485936|gb|EFU76314.1| ATP-dependent DNA helicase PcrA [Eubacterium saburreum DSM 3986]
          Length = 612

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 108/558 (19%), Positives = 190/558 (34%), Gaps = 116/558 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K L   YE   +    LDFED++  T +LL +    A I   +     +IL+DE QD + 
Sbjct: 162 KKLYRDYETELESRGKLDFEDMLSLTFELLSE---RADILQAVQNRYRYILVDEFQDINF 218

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+ +I+ +  +           + +  VGD+ QSIY F GA P+ +L  +R  +     
Sbjct: 219 LQYNIIKLMAGN----------KQNITVVGDDDQSIYRFRGARPEIMLGFERDFKN---- 264

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L ++FRST  I+    K+ S        S  +         + G    V L
Sbjct: 265 ----VKKVFLDINFRSTTQIVNASTKLISFNNKRFPKSFKA---------KNGDGAPVSL 311

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            E      +                             I   I   I      +N     
Sbjct: 312 IEFKNPFLEVNT--------------------------IVKDIKEYIKAKQDINN----- 340

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFIL 429
                I +L R          L         I+    D    L DH   KD+++  +  L
Sbjct: 341 -----IAILYRTNLSPR----LLIERLMRNNIAFTIRDAIPNLFDHWIAKDIISYIKLAL 391

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +  +    + +   P    S D +    + R   ET+++Y    +   I +   + + + 
Sbjct: 392 NMGNRSDLLRISNKPNRYISRDSL---SSSRANLETLFDYYDDKSY-MIKRIIELREQLR 447

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSS 546
            + ++    +   +   ++G  +  +++    G E  +   VL +  N       NS++ 
Sbjct: 448 TIKNLKPAVAIR-YIRNVVGYDEYIEEYCDMNGVESDECYTVLGDLENSATDY--NSFND 504

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
               + E        ++  + N N VR+MT H++KGLE  +V+++D              
Sbjct: 505 WFVHMDEYRNELIQARKKSNENDNGVRLMTFHSSKGLEFDIVYIIDVNEGSVP------- 557

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                         K       EE  R+LYV MTRA  +L IC 
Sbjct: 558 ----------------------------YKKAKGADEIEEERRMLYVAMTRAKKKLFICY 589

Query: 667 HSNTSNEKKSNQRTWYDM 684
                 +         ++
Sbjct: 590 CKENFGKSIGKSNFVIEL 607


>gi|241767147|ref|ZP_04764910.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241362257|gb|EER58285.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 778

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 97/599 (16%), Positives = 178/599 (29%), Gaps = 121/599 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + A YEE       +DF+DLI     LL+       +R K    + H+L+DE QDT+ 
Sbjct: 250 AVVMARYEERLAAYQSVDFDDLISMPLRLLRDHPE---VRAKWQALLGHVLVDEYQDTNA 306

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  +               AVGD+ QSIY + GA    + +  +   +    
Sbjct: 307 TQYELLKLLVGE----------RGHFTAVGDDDQSIYGWRGATLDNLKKLPQDFPQ---- 352

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST+ IL   + V                                L
Sbjct: 353 ----LKVIKLEQNYRSTSAILRAANNVIGPNPK--------------------------L 382

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           + + +     +  P +              +    A R    I ++        +     
Sbjct: 383 FPKTLFSELGEGEPVRVV---------DADTEEHEAERAVARIQSLRAASNPPPD----- 428

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              K   +L R            R       I    +      D   IKDL A  R  ++
Sbjct: 429 --WKSFAILYRANHQAKPFEKALR----RANIPYKVSGGTSFFDRAEIKDLCAWFRLWIN 482

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKFANCGISKFQH 483
            +DD +F+  + +P        +  +        ++++                +     
Sbjct: 483 NDDDPAFLRAIGNPKRGIGHTTLAALGAFATQHKQSMFGALFNGMLPAAVPKRALDGLHE 542

Query: 484 VIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLN 534
             +YI++L H A+     +    F    L      Q       +E         + EF +
Sbjct: 543 FGRYINDLEHRARHTHGAEDARAFLADWLKEIGYEQHLYDGEDSEKVAAARWSNVMEFCD 602

Query: 535 FTLRNE------------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
           +  +                   SL E+   +               + V + T+H +KG
Sbjct: 603 WMAQRAGGQIDDTAGAVVARETKSLLEVSQTIALLS--TISEREKEQDMVTLSTLHASKG 660

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE P V LV     +                               +      +      
Sbjct: 661 LEWPHVVLVGVTEGMLPF------------------------KLDDDEGRQQKVTDDTLQ 696

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +E  RL+YVG+TRA   L +         ++         + +   +    ++    
Sbjct: 697 RLQEERRLMYVGITRAQRTLAVSWTKKRKKGREMVAAQPSRFIAEMGLDKTTAREDPRE 755


>gi|299749616|ref|XP_002911398.1| ATP-dependent DNA helicase pcra [Coprinopsis cinerea okayama7#130]
 gi|298408518|gb|EFI27904.1| ATP-dependent DNA helicase pcra [Coprinopsis cinerea okayama7#130]
          Length = 966

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 102/672 (15%), Positives = 209/672 (31%), Gaps = 153/672 (22%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   +   YE A ++   LDF+DL+I    L                   HIL+D
Sbjct: 181 ATLEVLVGKVYQGYEAALRRINALDFDDLLIYGVKLFTTHKECVLWC-------RHILVD 233

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT++ Q+E++ ++            + R +  VGD  QSIY +  AE K + + +  
Sbjct: 234 EFQDTNVTQYELMLAI-----------GTARCVTIVGDPDQSIYGWRSAEVKNLEKMRTD 282

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         I L  ++RSTA IL     +                          
Sbjct: 283 FPNTFQ--------IFLEENYRSTASILEASLAI-------------------------- 308

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       S + +  +          D   +        R IA  I  ++      
Sbjct: 309 --------RINKSLYTAHPSGITPILYQVNDENEES-------RFIAIEIKRLVAN---- 349

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                 +++  D  +L+R    +  +    +    + +I           + L +KDL+A
Sbjct: 350 ---MGGILRWGDFSILLRYNALSRNLEKAFQ----NERIPCRILGGHKFFERLEVKDLLA 402

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK--FANCGISKF 481
             + I +     +F+ ++  P     E  +  +  +  ++   Y  + +  +      + 
Sbjct: 403 YLQLIDNPIFGPAFIRVVNVPGRGIGEKTLNDLTKRAEDSGKSYLELLEGIYDMRLTDQK 462

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
             V K I   +H+ +      +   +        +   +      + + E ++F    E+
Sbjct: 463 PSVRKKIAPFVHVIRTLRAFQYEEHL--------KKTQQDWETRWENVKELISFAKEIEE 514

Query: 542 NSYSSLQE-----------------LISELEQYPPTIKRAHSANHNE---VRIMTVHTAK 581
                 +                  L   L+    + +  + +  +    V I T H+AK
Sbjct: 515 QMAKDREAARASGVIDELEVEDTTPLRQFLQASMLSSEGDNESEEDANDKVTITTCHSAK 574

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE PVVF+    S  +                                        ++ 
Sbjct: 575 GLEWPVVFIPSADSSTYPF--------------------------------------IRS 596

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNT----SNEKKSNQRTWYDMVYDSFHNDERV-- 695
             ++E  RLLYV  TRA   L + + ++       ++K   +   +++  +  + +R   
Sbjct: 597 EDEDEERRLLYVACTRAKSMLYLTRTTSRKVAGDVKQKQLSKFIANILDKNHKDGKRATF 656

Query: 696 -KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            + +      +++   +        +N   E      +L  E           +ND +  
Sbjct: 657 IQHLPHFEEEDREIISSVLGRPTPEDNKVQEMLGEFLRLGREVPYNIVWRPASQNDPSPQ 716

Query: 755 YILNPSTIDTKG 766
             +  S +    
Sbjct: 717 PSVQHSHMQFPQ 728


>gi|237748331|ref|ZP_04578811.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13]
 gi|229379693|gb|EEO29784.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13]
          Length = 1246

 Score =  240 bits (612), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 131/983 (13%), Positives = 290/983 (29%), Gaps = 169/983 (17%)

Query: 50   AQTLQQASQTQCIEERFSLLSSFFLTQKF-------TPQKNIITQEINKKSPDLKEKLKK 102
            A   QQ  +   IE  F      F T             + + T ++   +   +   K 
Sbjct: 255  ADLNQQRYKPSAIESAFGAFDRLFATGDPLGMVDSVGKTELLTTSKLLASTKKDRTTPKH 314

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH----YEEAKKKNCVLDFEDLIINTND 158
                  +             ++A + L K          +  K++  V+ F+D++I+   
Sbjct: 315  LFFGLAEKLVIECQQTEADLSMAWMRLLKRFLEETVALLKAKKQEKRVVAFDDMLIDLYK 374

Query: 159  LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
             L   +   W+   + Q+    LIDE QDT  +Q+ + RS+  +  +          +F 
Sbjct: 375  ALHNPE-LPWLPDVLRQQFPAALIDEFQDTDPLQYAIFRSIYGESDLP---------VFM 424

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            VGD KQ+IYSF  A+                   +      LP + RSTA ++   + VF
Sbjct: 425  VGDPKQAIYSFRNAD----------LHTYFAARSEVDYHYTLPENHRSTAGLIEACNTVF 474

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS--- 335
            S+   A        + +     R G     +L +      +++       W    ++   
Sbjct: 475  SVNSRAF-----LQSGLDFLPVRNGNRERPELLDL----SETESEASLTIWRLPDENGEW 525

Query: 336  LPQESSASILARRIAYTISNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            + +  +        A  I+ ++  +        ++ + A D+ VLVR  ++  ++     
Sbjct: 526  IERTKAKERAIEATADEIARLLNASAKGKLTIGEKPVCAGDMAVLVRSHREASMVGNAL- 584

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
               +   I  V      +      ++L  +   +LS   +      L + +  F+  ++ 
Sbjct: 585  ---SRRGIGSVSLSHESVFLSREARELECILAALLSPGSESLLKAALSTEMLGFNAGEMD 641

Query: 455  KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
             +                      ++     +   +  +             ++  +   
Sbjct: 642  VLSND------------------EARLSDCFERFEQYRNSWISNGIGYALRFLMDREGIV 683

Query: 515  QQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISELEQY--PPTIKRAHSAN 568
            ++ ++    E        L E LN    N     + L+ L  + E        +     +
Sbjct: 684  KRLLALPDGERRMTNLMHLAELLNRESENNDAPDALLRYLAEKRESDKTGEEEELRLETD 743

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             N V+IMTVH +KGLE   VF           + +         +D+  + I     +  
Sbjct: 744  RNLVQIMTVHRSKGLEFAFVFCPLLWDGY--SRRMPNALEGIEYHDNEKLVIDF--REMD 799

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYD 687
                  +       T  E  RL+YV +TRA  +  +     + SN K     +   ++  
Sbjct: 800  KETSQAIKNDQAIETAAESLRLIYVALTRAVYRCYLVAGCYSRSNAKLKTAESQRSLLNW 859

Query: 688  SFHNDERVKKI-KLTNSINKDEWIAYEWSTHHPENTPLE--------------------- 725
                +        L ++  K++ IA   +        LE                     
Sbjct: 860  LVAGNGCSPDEWFLWDNRKKEDEIAAGRNAIEEAWKALEGRCRDIVLSDLPENRGVSLTE 919

Query: 726  ----REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-------------------TI 762
                 +    +  + + + +   +     +     L+ S                     
Sbjct: 920  TENGHDTLAAKTFNGRIVSRWRMNSFSGLMRNAVELDESGDHDEYVVAETDGSVVMETAQ 979

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP----- 817
                  + + +L   +    G  +H + +             I S   +  +        
Sbjct: 980  PELSTIDADDILLFPKGTFAGSCLHAMFENADFTDRESWNTAIESALQQFPQTAEVITVE 1039

Query: 818  ------AKEYKNLLLSITRLLENPM-----MTTAMSCDSYSEVSV---SGKINC------ 857
                            +  +L   +     +++  +    +E+        ++       
Sbjct: 1040 DGKNSYPDLKAMARRMMEDVLNTLLGDGIVLSSIPNEKRLTELPFCLSEAPVSAKSLNAL 1099

Query: 858  -------------PKKDIIISGRIDQISISQQNIFIFEYK-----THH----HVPQEIEH 895
                            +  ++G ID +   +   ++ ++K     T+       P  +  
Sbjct: 1100 FKRFDYPVPQLVFDDMNAFLNGFIDLVFEHEGRFYVLDWKSNVLGTNREDYGPAPVAMAM 1159

Query: 896  IPYTHIAQLSIYEKILKDSYPNK 918
              + +  Q  +Y   L      +
Sbjct: 1160 AEHGYHWQYLLYTVALHRFLSLR 1182


>gi|256841725|ref|ZP_05547231.1| ATP-dependent helicase [Parabacteroides sp. D13]
 gi|256736619|gb|EEU49947.1| ATP-dependent helicase [Parabacteroides sp. D13]
          Length = 1055

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 131/845 (15%), Positives = 259/845 (30%), Gaps = 121/845 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---R 163
                   +NT +       +L +   ++      +++  V+    LI +T +LL K    
Sbjct: 314  LFANLTAYNTAREIVRYYYTLGILTDISRQIASYREEKNVM----LIADTTELLNKVISG 369

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + +I  K    ++H +IDE QDTS +QW   R L E+         + R    VGD K
Sbjct: 370  SDAPFIYEKTGTHVDHYMIDEFQDTSGMQWNNFRPLVEESLA------NGRANLIVGDVK 423

Query: 224  QSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F  ++ K +    +R  +       ++     L  ++RS   I+   +  F+   
Sbjct: 424  QSIYRFRNSDWKLLDEQVRRDFE------EEQVCEETLMDNWRSCRHIVEFNNAFFTAAP 477

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP---QQESWTSYFDSLPQE 339
                   +        S         ++             P   +       F S  +E
Sbjct: 478  AILQDLYNEALKTSSLSEEERTAFFTKIMTAYDKSIQRVPPPFQKKDGHVRIDFLSGDEE 537

Query: 340  SSASILA-RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  R+  T+  +                 KDI +LVR  ++  L+       K 
Sbjct: 538  KDWKQEAMERLPATLERLQDNGYAL----------KDIAILVRTNQEGALVADTLLAYKE 587

Query: 399  -----DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                  Y   ++ +D   +    A++ L+A+ R++ + ED  +            +    
Sbjct: 588  EHPSDRYNYDIISDDALFVGSSPAVRFLIAVLRYLRNPEDRTN---------RKLAMYAY 638

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
              +  +  E+E      Q   +        V + +    + + +    +           
Sbjct: 639  QVLTGKFGESEADESVFQNLQSISRQSLYEVTEGL--FRNFSAYFPETEQV--------- 687

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                           +  FL+      Q   + L   +   ++       A     N +R
Sbjct: 688  --------------FVQAFLDMVSEYAQKESADLNRFLRWWDETGYRKTIATPDGQNAIR 733

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL---NDDPGIPIWIPQSKSRNN 630
            I+TVH +KGL   VV +     ++        +          D   +          + 
Sbjct: 734  ILTVHKSKGLGFKVVIIPFGDWEIDHKPTKPVILWCHPEKKPFDRLHLVPVRYGQILSST 793

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
            I +      +     +    LYV  TR+ ++LI+         K+        +    + 
Sbjct: 794  IFAKDYFKERLHAFIDNLNTLYVAFTRSKEELIVFSPRPRKINKEGKVEKITSIADLLWA 853

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              E   +             +   +    E  P                           
Sbjct: 854  GVETEIEDDTFERGEWWRPASGRTAEDTLEEIP--------------------------- 886

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
            ++  Y ++P           +    DN     G ++H++L  I           + SY  
Sbjct: 887  MSRLYSVSPDDRLQLRLHG-KGFFFDNARRKHGTLMHEVLSRI--RTPKDIPASVESY-- 941

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
            + A +   +E   L+  +  LL+   +       +   V     I   K    +S R D+
Sbjct: 942  RLAGVINREEAAELISRLEELLQAEEVKAWYDGSAR--VLNEVDILFGKG---LSKRPDR 996

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            + I    + + +YK         E     H  Q+  Y ++++     + +   L YV   
Sbjct: 997  VMIKDNKVIVVDYKFG-------ERQDKRHPNQVRNYLQLIRKMGFER-VDGYLWYVELG 1048

Query: 931  KVFII 935
            K+  +
Sbjct: 1049 KIEAV 1053


>gi|149194062|ref|ZP_01871160.1| ATP-DEPENDENT DNA HELICASE [Caminibacter mediatlanticus TB-2]
 gi|149136015|gb|EDM24493.1| ATP-DEPENDENT DNA HELICASE [Caminibacter mediatlanticus TB-2]
          Length = 677

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 105/551 (19%), Positives = 200/551 (36%), Gaps = 120/551 (21%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             +          +   Y++   +N ++DF+DL++ T  +L + D    +  +I Q+  +
Sbjct: 166 ALANEEVYKKLALIYDKYQKYLLENNLVDFDDLLLLTYRILNENDD---LAKEISQKYQY 222

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +++DE QDT+ IQ            + K    +   +  VGD+ QSIY F GA  K +L 
Sbjct: 223 VMVDEYQDTNEIQ----------LLLLKKLCLTHNNICVVGDDDQSIYGFRGANHKNILD 272

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            ++              +I+L L++RST  ILT  + + S  +N       S        
Sbjct: 273 FEKDF---------NAEVIKLELNYRSTNQILTAANNLISFNKNRYNKKLISAL------ 317

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
              G    V++                           +  + +  A  IA  I  +I +
Sbjct: 318 ---GDGKEVEVL--------------------------ENYNETAEAEVIAKRIKTLIDS 348

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      +   +I +L R    +  I    R    +Y I+          +   IK
Sbjct: 349 G----------VSPNEIAILYRINALSRSIEDGLR----NYGIAYKLVGGMKFYEREEIK 394

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           DL++  R I++ +DD SF  ++  P     +  + K+   +    + +++I+  +   +S
Sbjct: 395 DLISYLRLIINPDDDYSFKRIVNKPRRGIGKTTLIKLEEAKG-NISFFKFIKDSSLKFLS 453

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
           K     K + E   + ++ S  +   LI   ++  +   S    +    ++EF       
Sbjct: 454 K--KAAKTLKEFTQMIEYFSTLNIEELIEAIEEKIELSTSYKDEDKRRNIEEFYGMMRE- 510

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              +  +L+E ++EL       K     + N + +MT+H +KGLE   +F++      F 
Sbjct: 511 --RNDLTLREFLNELSLESDQDKL----SDNLINVMTIHASKGLEFEYLFVIGLEEGFFP 564

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                     +  EE  RL YV +TRA 
Sbjct: 565 LN---------------------------------------DADIEEERRLAYVAITRAK 585

Query: 660 DQLIICKHSNT 670
            +L +    + 
Sbjct: 586 KELTLSYVKSR 596


>gi|167587403|ref|ZP_02379791.1| UvrD/REP helicase [Burkholderia ubonensis Bu]
          Length = 539

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 75/456 (16%), Positives = 147/456 (32%), Gaps = 72/456 (15%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           K  Q      +++        +T +       +   Y++  ++  V+DF +L++   +LL
Sbjct: 138 KNVQYFINNAKEQGLRPDKVDATDSFNRKFVEIYQAYDQQCQREGVVDFPELLLRCYELL 197

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                   +R        HIL+DE QDT+ +Q+  ++ L                +FAVG
Sbjct: 198 AHNP---PLRAHYQARFKHILVDEFQDTNKLQYAWLKLLAG----------GQNAIFAVG 244

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY+F GA    +   +   + R        ++I+L  ++RS  +IL   + + S 
Sbjct: 245 DDDQSIYAFRGANVGNMRDFEDEFRVR--------NLIKLEQNYRSHGNILDAANHLISN 296

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             +  G +  +           G    V+++E      +                     
Sbjct: 297 NAHRLGKNLRTD---------AGHGEPVRVYEATTDSQE--------------------- 326

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   + ++I T           +   ++ +L R    +  I           
Sbjct: 327 -----AGWIVEEVRSLINTG----------MARSEVAILYRSNAQSRAIEHTL----MTA 367

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQ 459
            I           +   IK  +A  R I +  DD +F  ++  P        I ++    
Sbjct: 368 GIPYRVYGGLRFFERQEIKHALAYLRLIDNPNDDTAFARVVNFPARGIGARSIEQLADAA 427

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518
           R     +   I        +        I ++    Q  S  +    ++ A      +  
Sbjct: 428 RLYGCAMAAAIPYVTGKAGTSLGAFANLIAKMRADTQQMSLPETVEYVVRASGLADFYQG 487

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            R G + ++ L E +N            L      +
Sbjct: 488 EREGQDRLENLQELVNAATAFVSEEGYGLDTPARSI 523


>gi|262404900|ref|ZP_06081454.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC586]
 gi|262348984|gb|EEY98123.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC586]
          Length = 671

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 96/664 (14%), Positives = 222/664 (33%), Gaps = 135/664 (20%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRLLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +        M K       +  +    Y++  +    LDF+DLI+    LL+  +    +
Sbjct: 146 MLTPPQAKAMAKGEQQ--QVFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSSEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNSSQYELVKLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKAL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S      +                                     +   ++    A R+
Sbjct: 303 FSELAEGEKL-----------------------------------KVILANNEDHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I          ++      + +D  +L R    + LI           ++    +  
Sbjct: 328 TAEI---------IAHKFLNRTEYRDYAILYRGNHQSRLIEKSL----TQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++ 
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFA 434

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               +   +++  +   A+  +  +    ++   +          
Sbjct: 435 ASFELGLEQHLGGRGLDNLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYDDWLYETSS 494

Query: 520 --RFGNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEV 572
             +     +  + +  ++ + + +          L+E++  L       +   + + + V
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V+L+     +  H+                               
Sbjct: 555 QLMTLHASKGLEFPFVYLIGAEEGILPHQTSID--------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +   EE  RL+YVG+TRA  +L            +  + +    + +   +D
Sbjct: 588 --------EENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDD 639

Query: 693 ERVK 696
              +
Sbjct: 640 IEWE 643


>gi|262384055|ref|ZP_06077191.1| ATP-dependent helicase [Bacteroides sp. 2_1_33B]
 gi|262294953|gb|EEY82885.1| ATP-dependent helicase [Bacteroides sp. 2_1_33B]
          Length = 1055

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 131/845 (15%), Positives = 259/845 (30%), Gaps = 121/845 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---R 163
                   +NT +       +L +   ++      +++  V+    LI +T +LL K    
Sbjct: 314  LFANLTAYNTAREIVRYYYTLGILTDISRQIASYREEKNVM----LIADTTELLNKVISG 369

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + +I  K    ++H +IDE QDTS +QW   R L E+         + R    VGD K
Sbjct: 370  SDAPFIYEKTGTHVDHYMIDEFQDTSGMQWNNFRPLVEESLA------NGRANLIVGDVK 423

Query: 224  QSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F  ++ K +    +R  +       ++     L  ++RS   I+   +  F+   
Sbjct: 424  QSIYRFRNSDWKLLDEQVRRDFE------EEQVCEETLMDNWRSCRHIVEFNNAFFTAAP 477

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP---QQESWTSYFDSLPQE 339
                   +        S         ++             P   +       F S  +E
Sbjct: 478  AILQDLYNEALKTSSLSEEERTAFFTKIMTAYDKSIQRVPPPFQKKDGHVRIDFLSGDEE 537

Query: 340  SSASILA-RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  R+  T+  +                 KDI +LVR  ++  L+       K 
Sbjct: 538  KDWKQEAMERLPATLERLQDNGYAL----------KDIAILVRTNQEGALVADTLLAYKE 587

Query: 399  -----DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                  Y   ++ +D   +    A++ L+A+ R++ + ED  +            +    
Sbjct: 588  EHPSDRYNYDIISDDALFVGSSPAVRFLIAVLRYLRNPEDRTN---------RKLAMYAY 638

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
              +  +  E+E      Q   +        V + +    + + +    +           
Sbjct: 639  QVLTGKFGESEADESVFQNLQSISRQSLYEVTEGL--FRNFSAYFPETEQV--------- 687

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                           +  FL+      Q   + L   +   ++       A     N +R
Sbjct: 688  --------------FVQAFLDMVSEYAQKESADLNRFLRWWDETGYRKTIATPDGQNAIR 733

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL---NDDPGIPIWIPQSKSRNN 630
            I+TVH +KGL   VV +     ++        +          D   +          + 
Sbjct: 734  ILTVHKSKGLGFKVVIIPFGDWEIDHKPTKPVILWCHPEKKPFDRLHLVPVRYGQILSST 793

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
            I +      +     +    LYV  TR+ ++LI+         K+        +    + 
Sbjct: 794  IFAKDYFKERLHAFIDNLNTLYVAFTRSKEELIVFSPRPRKINKEGKVEKITSIADLLWA 853

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              E   +             +   +    E  P                           
Sbjct: 854  GVETEIEDDTFERGEWWHPASGRTAEDTLEEIP--------------------------- 886

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
            ++  Y ++P           +    DN     G ++H++L  I           + SY  
Sbjct: 887  MSRLYSVSPDDRLQLRLHG-KGFFFDNARRKHGTLMHEVLSRI--RTPKDIPASVESY-- 941

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
            + A +   +E   L+  +  LL+   +       +   V     I   K    +S R D+
Sbjct: 942  RLAGVINREEAAELISRLEELLQAEEVKAWYDGSAR--VLNEVDILFGKG---LSKRPDR 996

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            + I    + + +YK         E     H  Q+  Y ++++     + +   L YV   
Sbjct: 997  VMIKDNKVIVVDYKFG-------ERQDKRHPNQVRNYLQLIRKMGFER-VDGYLWYVELG 1048

Query: 931  KVFII 935
            K+  +
Sbjct: 1049 KIEAV 1053


>gi|210629805|ref|ZP_03296129.1| hypothetical protein COLSTE_00012 [Collinsella stercoris DSM 13279]
 gi|210160798|gb|EEA91769.1| hypothetical protein COLSTE_00012 [Collinsella stercoris DSM 13279]
          Length = 660

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 134/425 (31%), Gaps = 79/425 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +    E   +    +DF+DL++ T +LL+       +  K  +   +I +DE QDT+
Sbjct: 276 AGQVYLELERRLRAANAMDFDDLLVRTLELLRT---RPEVLEKYQERFRYISVDEYQDTN 332

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+E+   L   +          + L  VGD+ QSIYS+ GA+   +L  +    K   
Sbjct: 333 HVQYEIANLLAAKY----------QNLMVVGDDDQSIYSWRGADISNILDFEEDFPK--- 379

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +++L  ++RST  IL   + V       +                        
Sbjct: 380 -----AKVVKLEQNYRSTGHILAAANAVVRNNSQRKEKRLF------------------- 415

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                        + ++       D   +        R IA  I  +             
Sbjct: 416 ---------TDLGDGEKIQAYQASDERDEG-------RWIASEIEKLHVCG--------- 450

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D+ V  R    + ++  +         +           D   I+D+MA  + I+
Sbjct: 451 -MSYDDMAVFYRTNAQSRILEDMF----LRAGVPYKIVGGTRFFDRAEIRDVMAYLKMIV 505

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYI 488
           +  D++S   ++ +P        I +I    R    + ++  +            V   +
Sbjct: 506 NPADEMSVKRVINTPRRGIGSTSIGRIEDLARQNACSFFQACEIAMAETGLFSAKVRNAL 565

Query: 489 HEL-----IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNE 540
            +                D   +I+      Q F +    E     + + EFL      E
Sbjct: 566 GDFVNIVREGRRMDGELKDVVEMIVDKSGLVQAFRAEATMEAESRAENIQEFLGVAAEFE 625

Query: 541 QNSYS 545
           +    
Sbjct: 626 ETHED 630


>gi|33598621|ref|NP_886264.1| ATP-dependent DNA helicase [Bordetella parapertussis 12822]
 gi|33574750|emb|CAE39409.1| ATP-dependent DNA helicase [Bordetella parapertussis]
          Length = 661

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 99/710 (13%), Positives = 215/710 (30%), Gaps = 118/710 (16%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                   +   V   +  G       A  ++   +           S        +  +
Sbjct: 40  AAREMAERVKTLVDPKLAKGLTISTFHALGVRLLREEAAHAGLKPQFSILDADDAMSIIQ 99

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            ++      +  +++  +   ++  +                A       +   Y     
Sbjct: 100 ELLATTDRGRLREVQSIISLWKNALLTPDQAAAAAITPTEVEAV-----TVYRGYAATLA 154

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               +DF+DLI    +LL++ +    +R +    + ++L+DE QDT++ Q+ +++ LT  
Sbjct: 155 AYQAVDFDDLIRIPAELLERNEE---VRTRWQNRVRYLLVDEYQDTNVCQYRLVQLLTG- 210

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                          AVGD+ Q+IY++ GA  + + +                 +I+L  
Sbjct: 211 ---------VRAMFTAVGDDDQAIYAWRGATIENLAKLTTDYPN--------LKLIKLEQ 253

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS   IL   + V             S           G    + +            
Sbjct: 254 NYRSVQRILAAANNVIERNPKLFEKKLWSDL---------GHGEPIIVSPM--------- 295

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                            +     A  IA  +S             +R  Q KD  +L R 
Sbjct: 296 -----------------NGDEHEAESIAMKVSA---------ARFERQAQWKDFAILYRS 329

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + ++    R LK    I    +      D   ++D++A  R + + EDD +F+    
Sbjct: 330 NHQSRVLEQALRNLK----IPYTISGGQSFFDKAEVRDILAYLRLVANDEDDPAFIRAAT 385

Query: 443 SPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIA 495
           +P     +  +  +         ++   + +       A   +   +   +++  +   A
Sbjct: 386 TPKRGIGQGTLQTLGQYAAQRQCSLLAAVDEAGPESLLAPRQLEPLRTFAEFVRRIQWRA 445

Query: 496 QF--------------CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                               D  + I   +        R        + E   +  R  +
Sbjct: 446 GRGVEGQPARAPEPAGQILDDLLSAIQYERYLYDMLEERPAQTRWQNVLELTGWLKRKAE 505

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +L +L+  +       +       + V++ T+H +KGLE P V+L      +  H 
Sbjct: 506 EDGMTLFDLVQHVALVTMLERGE-EEEPDAVKLSTLHASKGLEYPHVYLAGVEEGLLPH- 563

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                      ++           +  +E  RL+YVG+TRA   
Sbjct: 564 ---------------------LGKDDEDSGDPARAAETLATRIQEERRLMYVGITRAQRS 602

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           L +         ++   R     + +    D +V++ + T +++  E + 
Sbjct: 603 LNLSWCKKRRRAREDVVREPSRFIEEMGLGDAKVQEDEATRAMSPKERLG 652


>gi|32491021|ref|NP_871275.1| hypothetical protein WGLp272 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166227|dbj|BAC24418.1| uvrD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 719

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/551 (18%), Positives = 191/551 (34%), Gaps = 114/551 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L   +   Y+    K  +LDF +L++  N+L         I     ++  +IL+DE QDT
Sbjct: 169 LYNKIYKEYQTTCDKLGLLDFSELLLRINELFINN---KSISKFYKKKFKYILVDEFQDT 225

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ+  I++ +          S    +  VGD+ QSIY + GA+ + +        +  
Sbjct: 226 NDIQYSWIKNFS----------SKECFIMIVGDDDQSIYGWRGAKSENMKNFINDFSR-- 273

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   II+L  ++RST +IL   + +        G                      
Sbjct: 274 ------TKIIKLQQNYRSTNNILQAANSLIMNNNLRIGKK-------------------- 307

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            LW         + +    +    ++   + +        I   I          +N KK
Sbjct: 308 -LW-------TEKKSGDLITIYQAYNEKDESN-------FIIKYI---------LNNQKK 343

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              + K+  +L RK   +  +            +               IK+ +A  R I
Sbjct: 344 LNNKKKEYAILYRKNSQSRSLEENL----LKNNLKYDIYGGLKFFSRQEIKNTLAYFRLI 399

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEY-----IQKFANCGISKFQ 482
           ++++DDLS+  ++  P     E  + KI       + +++E           +      +
Sbjct: 400 VNKKDDLSYERIINFPKRKIGEKTLKKIKNISKNKKLSLWESTNFFIKNNLNDAKSFSLK 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKG---RQQFISRFGNEVIDVLDEFLNFTLRN 539
           +    I  L    +  S H+ F  ++         ++      N  ID   E +N   + 
Sbjct: 460 NFFYLIDYLKENIKNLSLHEKFNFVIKKSGLLNFYEKEKKNINNSRIDNWQELVNSAKQF 519

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E N   ++ E              ++   + ++++MT+H++KGLE P+VF++     +
Sbjct: 520 FIENNKEKNILEKFLAFSTLESERYTSYDDENYKIKLMTLHSSKGLEFPIVFIIGMEEGL 579

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F +                                  +I    K   EE  RL YVGMTR
Sbjct: 580 FPN----------------------------------IIYSNNKEKLEEERRLAYVGMTR 605

Query: 658 ASDQLIICKHS 668
           A  +L+I    
Sbjct: 606 AMKKLVITYVK 616


>gi|260438613|ref|ZP_05792429.1| putative ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus
           DSM 2876]
 gi|292809205|gb|EFF68410.1| putative ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus
           DSM 2876]
          Length = 648

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 102/559 (18%), Positives = 191/559 (34%), Gaps = 121/559 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE   K+  ++DF+D+++   +L  +      I  K  Q   +ILIDE QD + +Q
Sbjct: 198 IFRRYESELKRKRLIDFDDMLLYCRELFLQ---RKDILLKWQQRYKYILIDEFQDINKVQ 254

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++VIR L E            R +F VGD+ QSIY F G+ P+ +L  ++   +      
Sbjct: 255 YDVIRMLAE----------PERNIFIVGDDDQSIYGFRGSRPEIMLNFEKDYPE------ 298

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L +++RST++I+     V    +     +  +            +   V +  
Sbjct: 299 --AEKIILDINYRSTSNIVDASGYVIRNNKVRFDKNIHTDN---------EKGDKVDII- 346

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                    + ++ +    RI   I + +              Q
Sbjct: 347 -------------------------ETNNINEEYDRIVKIIRSFVDAGK----------Q 371

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQ 431
             D  VL R                 +  I  V  D    + +H   KD++         
Sbjct: 372 YADFAVLFRTNVTAAP----LVRKFMENNIPFVLRDGIPNIFEHWIAKDILTYMTLAEGG 427

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
                F+ ++  PL     D +        E E  YE         I++ + + + ++ +
Sbjct: 428 RKRADFIRIMNKPLRYIGRDYVTDSEVSFDELEKYYEEK----PWMINRIRKMERELNAM 483

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQ 548
             +  +   +     + G     +++      E     D+LDE +  +    +       
Sbjct: 484 SDMTCYAMINYLRKGV-GYDDYVKEYAKNHSIEPQELSDILDEIMESSKDFIK-----FD 537

Query: 549 ELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           +    +E+Y   +K  H+     + V + T+H++KGLE   VF++D    +  H      
Sbjct: 538 DWREYIEKYTEELKENHTKRDLKDYVTMTTMHSSKGLEYDTVFIIDANEGITPH------ 591

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                         K +  +  EE  R+ YV MTRA  +L I  
Sbjct: 592 -----------------------------KKAVLDADIEEERRMFYVAMTRAKKKLYIFC 622

Query: 667 HSNTSNEKKSNQRTWYDMV 685
                N+     R   +++
Sbjct: 623 PKERYNKSLETSRFVNEIM 641


>gi|78049998|ref|YP_366173.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
 gi|78038428|emb|CAJ26173.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
          Length = 1350

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 127/956 (13%), Positives = 260/956 (27%), Gaps = 104/956 (10%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                F  + +       +   +      A                +   +  L       
Sbjct: 284  HGTAFFDAIMAAIEGGILSKVSYKPEWLASLWHWFETFAAAPALNTAPHAKLLKLTAAEL 343

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
                 ++   ++P     +    D ++    R   ++  +       L     A     K
Sbjct: 344  AAGTNKKFVDRTPS--SPMSHQIDGYLTALARVEEWRSRRRIALLHALRDDAIARLALLK 401

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            ++  V  ++DL+      L+     A +  ++  +    L+DE QDT   QW +  ++  
Sbjct: 402  RQRRVQTYDDLVDGVAHALQGAQADALV-KRLRTQYAIALVDEFQDTDDRQWSIFSNVFG 460

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +  + +        LF +GD KQ+IY F G + +  L            A        L 
Sbjct: 461  EGPLARAA-GLEPALFLIGDPKQAIYGFRGGDVRTYL----------AAAVTAELAPPLS 509

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-S 320
             +FRS   +L  +D +++    A     D       R+        +Q            
Sbjct: 510  HNFRSRPGVLAAIDALYAQAGYADAFLTDGIAFHPVRAGTKRVDEDLQRDGVTAPALTLW 569

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVL 379
            +                   +  +        I   +      +     R +QA DI VL
Sbjct: 570  RAPEPPPPAKGKPKPWSAGRARELATAACVAAIRGWLAGGRDGTATVCGRPVQAGDIAVL 629

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            VR   +   I      +     I  V   +  L       +++AL + +L   DD     
Sbjct: 630  VRSHGEATRIQQALGAV----GIPAVAAGKQSLFATEQALEVLALLQALLDPGDDSRLRA 685

Query: 440  MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--IKYIHELIHIAQF 497
             L + L       I  +          + + Q+ A     ++Q    +  I EL      
Sbjct: 686  ALATVLIGEDAIAIAAL----ERDGERHRHWQQQALDWRERWQRGGPLALIGELGATHG- 740

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                     +L    G ++  +         L E L          +  +  L   +   
Sbjct: 741  -------QRLLALVDGERRLTNYLQ------LAELLQEADARALGPHGLVDWLSRRIANA 787

Query: 558  PPTIKRAH---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                +       ++   V+I+T+H +KGLE P+VFL   G         +   +      
Sbjct: 788  DDNDEAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIGRSDKGAGRHCVVHAPDVG 847

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                     +++  +   S      K+  + E  RLLYVG+TRA   L I       +E+
Sbjct: 848  RQLHW----KTERDDPSWSAAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGPFHQHER 903

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
             +       +        E    +  +        +        P     +R    +  +
Sbjct: 904  TALSAMLRALDALQGAAGEGTVVVDTSTPPAHLPRLPAPIEAQVPPARSAQRHIAPEWWV 963

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPS----------TIDTKGKTNLESLLSDNQTFNRGL 784
                      +    D      +  S           +     ++ E           G+
Sbjct: 964  YSFTQLANADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVASDAEPFDPRFAGNRFGV 1023

Query: 785  IIHKLLQVIFTLP--------EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP- 835
            ++H + +                                +   +  + L  +T L+ +  
Sbjct: 1024 VMHDVFERCDFAAWQAWRPSQPAPDGQAAPILQALQRGGYAQDDLDDGLRMLTALIGHTL 1083

Query: 836  --------MMTTAMSCDSYSEVSVS---------------GKINCPKKDI---------- 862
                     +         +E+                   +                  
Sbjct: 1084 TVALPEGTRLADVPEPQRRNEMEFHFAMRPTRVDALLALLHRFGVVGDRQAFGARQRLEG 1143

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
            +++G ID         ++ +YK++     + + +        +  Q  IY   L  
Sbjct: 1144 LMTGLIDLTYSVDGRWYVLDYKSNRLPSYDADALARAMAHSEYELQALIYTVALHR 1199


>gi|54307318|ref|YP_128338.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           SS9]
 gi|46911738|emb|CAG18536.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           SS9]
          Length = 673

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 111/709 (15%), Positives = 230/709 (32%), Gaps = 130/709 (18%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQCIEERFSLLSSFFLTQ 76
           D        ++  NK      E    T+ KK     +     T  +        +  L  
Sbjct: 44  DYKARNIAALTFTNKAAREMKERVGKTLGKKEAKGLMVSTFHTLGLNIIRREYKALGLKA 103

Query: 77  KFTPQKNIITQEINKKSPDL-----KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--L 129
            F+   +     + K+  +      K+ LK  Q      ++   +    ++   S    L
Sbjct: 104 NFSLFDDQDQMALLKELTEAELDGDKDLLKLLQSAISNWKNEMLSAAEAQAYAQSERDQL 163

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
             +    Y+   K    LDF+DLI+    LL+       +R +   +I ++L+DE QDT+
Sbjct: 164 FAHCYELYQRQMKAYNALDFDDLILLPVLLLRDD---QEMRQRWQNKIRYLLVDEYQDTN 220

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+  ++ L  +                VGD+ QS+YS+ GA+P+ +   ++       
Sbjct: 221 TSQYLFVKLLVGE----------RSRFTVVGDDDQSVYSWRGAQPENLGLLQKDFP---- 266

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST+ IL   + + +   +    +  S                 +
Sbjct: 267 ----SLRVIKLEQNYRSTSRILRTANILIANNPHLFEKTLFSEIPDG------------E 310

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           + + + ++++                          A ++   I  +I    + + G   
Sbjct: 311 MLKVITAKNED-----------------------HEAEKV---IGELIAHRFLNNTG--- 341

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               KD  +L R    + L            +I    +          IKD+MA  R + 
Sbjct: 342 ---YKDYSILYRGNHQSRLFEKSL----MQNRIPYKISGGTSFFSRSEIKDIMAYLRLLT 394

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQ 482
           + +DD +F+ ++ +P        + K+        ++++    +               Q
Sbjct: 395 NLDDDNAFLRIVNTPRREIGPVTLEKLGTYANMRGKSLFASSFELGLEQHLAGRGLENLQ 454

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTL 537
              ++I E+    +          ++                      +  + +  ++  
Sbjct: 455 RFTRWIVEMSENIERGDSVAALRELVRDIHYEDWLYESSPSPKAAEMRMKNVSQLYSWVT 514

Query: 538 -----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                 N  N   +L+E++  L       +       ++V++MT+H +KGLE P V+LV 
Sbjct: 515 ADLEGDNYDNEVKTLKEIVQRLTLRDMMERGEDDDEADQVQLMTLHASKGLEFPYVYLVG 574

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       +   EE  RL Y
Sbjct: 575 AEEGILPHQTSVD-----------------------------------EGNVEEERRLAY 599

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           VG+TRA  +L            +  +      +Y+   +D + +  K  
Sbjct: 600 VGITRAQKELTFTLCKERRQYGELIKPEPSRFLYELPQDDLQWEVEKRP 648


>gi|153824049|ref|ZP_01976716.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33]
 gi|126518428|gb|EAZ75651.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33]
          Length = 607

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 95/628 (15%), Positives = 212/628 (33%), Gaps = 135/628 (21%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRLLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +        M K       L  +    Y++  +    LDF+DLI+    LL+  +    +
Sbjct: 146 MLTPPQAKAMAKGEQQL--LFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKAL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S      +                                     +   ++    A R+
Sbjct: 303 FSELAEGEKL-----------------------------------KVILANNEDHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I          ++      + +D  +L R    + LI           ++    +  
Sbjct: 328 IAEI---------IAHKFLNRTEYRDYAILYRGNHQSRLIEKSL----TQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYE 468
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++ 
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFT 434

Query: 469 YIQKFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
              +               +   +++  +   A+  +  +    ++   +          
Sbjct: 435 ASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSA 494

Query: 520 --RFGNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEV 572
             +     +  + +  ++ + + +          L+E++  L       +   + + + V
Sbjct: 495 SPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAV 554

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V+L+     +  H+                               
Sbjct: 555 QLMTLHASKGLEFPYVYLIGAEEGILPHQTSID--------------------------- 587

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                   +   EE  RL+YVG+TRA  
Sbjct: 588 --------EENVEEERRLMYVGITRAQR 607


>gi|56461631|ref|YP_156912.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
            loihiensis L2TR]
 gi|56180641|gb|AAV83363.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
            loihiensis L2TR]
          Length = 1241

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 142/1014 (14%), Positives = 303/1014 (29%), Gaps = 149/1014 (14%)

Query: 43   NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP-------QKNIITQEINKKSPD 95
             P + +      QA       ++F   + +                KNI T E+ K +  
Sbjct: 256  APIVQELVDKTSQAKGAATKLKQFQKFADWCGDPDLVEPEATAANWKNISTDELQKFADA 315

Query: 96   LKEKLKKSQDEFIKIRDRFNTYKMF---KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
                + +S     ++++R    K+    +        A +++  + E + +   +  +D+
Sbjct: 316  KLGDMPQSWAVLGELQERIKRSKVQQQEELAKVKQHAAFWVSNRFAELQNQRAEMGHDDM 375

Query: 153  IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
            +    D LK       +   I ++    ++DE QDT  +Q+E+   +             
Sbjct: 376  LTRLRDALKGPS-GEALAAAIRKQYPVAMVDEFQDTDPVQYEIFNRIY-----NLADPHP 429

Query: 213  PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
               +F +GD KQ+IYSF  A+    L+ +R           +     L  +FRS+  ++ 
Sbjct: 430  GTGIFLIGDPKQAIYSFRNADIYTYLKARRD---------TEGRHYNLARNFRSSQAMVD 480

Query: 273  VVDKVFSIPEN--AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
             V+ +F   E          +    +   + +G  G  + ++  +   + +  P      
Sbjct: 481  GVNALFERAEELPRGAFLFKTEAENQLPFNPVGANGLKRTFKHCLLSSNLKTAPALLWSV 540

Query: 331  SYFDSLPQESSASILARRIAYTISNMIG----TDTIFSNGKKRVIQAKDILVLVRKRKDT 386
            S  +   +++     A   A  I++++           +  ++ ++  DI VLV    + 
Sbjct: 541  SGEEKRNKDTFFRAAANHHANLIASLLNDPQAGYYDGDDKLEQRVKTSDIAVLVNNFNEA 600

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
              I    + L +    SV  +DR  +      KDL+AL        D       L + + 
Sbjct: 601  NAIK---KALSDRGLKSVYLSDRESVFAQRVAKDLLALVSACAEPRDPSLIRSALATQIL 657

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                 ++  I +   E E   E    + +      Q V+  +H L+H      P      
Sbjct: 658  GLPLSELEHIHSHEREWEQRVEQFLSYHDQWQR--QGVLAMLHSLLH--DHQVPAKLLE- 712

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNF----------TLRNEQNSYSSLQELISELEQ 556
                  G +Q            + E L             + +     +      S    
Sbjct: 713  --DRIHGERQLSDVL------HIAELLQQQSLVLDGIPALVNHFAEQVNERHGFGSNSRT 764

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                 +    ++   ++I+T+H +KGL+ P+VF+            IK   +    N + 
Sbjct: 765  QSDEQQLRLESDDELIKIITIHKSKGLQYPLVFMPFVAYTQAEAYRIKPPAVYHDENGEL 824

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
             +                  + L      E  R +YV +TRA     I   +   +    
Sbjct: 825  QVLWSKDDDN---------KQRLSNEILAEDLRKMYVAVTRAQYATFIALEAVKEHRNNP 875

Query: 677  ------NQRTWYDMVYDSFHNDERVKKIKLTNSINKDE--WIAYEWSTHHPENTPLEREE 728
                     +  D +Y   +   +         +  DE    A E     P+ TP     
Sbjct: 876  LFYLLNGGESLTDELYTEVNERWQQAPHTQLTRLEDDEPLVRALEQEQTTPKLTPRSMPA 935

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNP-------------STIDTKGKTNLESLLS 775
              K           L        +     +P             + + +  + + +S+  
Sbjct: 936  DRKLERWWVASYSALKYEGAVTKSVQAPQSPDEMNLLDERDDDEAEVASAAEPSPDSIHH 995

Query: 776  DNQTFNRGLIIHKLLQVIFTLP-EHKRKNFITSYCTKNA---KLWPAKEYKNLLLSITRL 831
              +    G  +H LL+    +       +               +  +   +L   +   
Sbjct: 996  LPKGAGPGTFLHNLLEESANIGFAQIAGDAAERAELVQGFCVSPYWQEHQNSLEHWLDAY 1055

Query: 832  LENPM----------MTTAMSCDSYSEVSV------SGKINCPKKDII------------ 863
            L N            ++      +  E         + +++   ++ I            
Sbjct: 1056 LHNEFPINDSGESVSLSALEQYKAEPEFWFGASEVNAQRLDALVREHILPGHERPALEPN 1115

Query: 864  -----ISGRIDQISISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEK 909
                 + G ID +       ++ +YK++     +  +         +   +  Q  IY  
Sbjct: 1116 VLNGMLKGFIDLVFEHNGKYYVADYKSNWLGEDDHAYTEQAMREKILHSRYDLQYVIYTL 1175

Query: 910  ILKDS----------YPNKSLVCLLIYVS------EPKVFIIPQNKLNKAFAEI 947
             L             Y       + +++              P  KL +    +
Sbjct: 1176 ALHRLLKARLGSDYDYDTHVGGAVYLFLRGHRAETGGAFCDRPPRKLIEQLDTL 1229


>gi|206559483|ref|YP_002230244.1| putative exodeoxyribonuclease V beta chain [Burkholderia cenocepacia
            J2315]
 gi|198035521|emb|CAR51400.1| putative exodeoxyribonuclease V beta chain [Burkholderia cenocepacia
            J2315]
          Length = 1235

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 125/989 (12%), Positives = 265/989 (26%), Gaps = 137/989 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             +W      +  + +     +   +      A  L   +      +  + L    L    
Sbjct: 239  RMWAAERDAIDALLRAAQPVLNQRSHKPDAVADALAAWTVHFEQGDATAALPKAALKLTQ 298

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T       +     +    +     +              +             L     
Sbjct: 299  TALTKATKKGGTTPAHAFFDVADALEAAVAAAEAAQRARWLALIAEWLDMAPAELAER-- 356

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 357  --KRTRRVVSFDDLLANLYHALHAHP---WLAETLRARYPAALIDEFQDTDPLQFAIFDR 411

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 412  IFA----------PGGPLFLVGDPKQAIYSFRAADLHTYLAARAR----------ASACY 451

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   ++ F     A  L       +R  +          +    V + 
Sbjct: 452  TLAVNQRSTPAIVDACNRFFLSNPRAFVLDGLDYYAVRAGTR---------VRAPFVDET 502

Query: 319  DSQCNPQQESWTSYFDS--LPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKD 375
            D         W        L +  + +  A+  A  I+ ++              +   D
Sbjct: 503  DPGPAGDFRVWALPGGEGTLLKREAQAQAAQACAAEIARLMRGAREGRVRLGDTPLSPGD 562

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I VLV+  +   L+  +       + I  V   +  +      + L  +   I +  D  
Sbjct: 563  IAVLVQTHRQGSLVKRVLAT----WGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLR 618

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                 L S  F      ++++     +           +   +S  +   +Y        
Sbjct: 619  RLRAALASDWFGLDAGALWRMEQ--GDGGAPPGASAADSADAMSWVERFSRYRLLWRERG 676

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-EL 554
                   F   +  A++             I+ L E        +     +L+ L +  L
Sbjct: 677  FAVMWRTFTRELRIAERLMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRL 736

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +      +    ++ N V+I+TVH +KGLE  +VF                +      +D
Sbjct: 737  DGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGALREPPSSALPDAREYHD 796

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSN 672
            + G  +        +   +   +   +    E  RL+YV +TRA  +  +    + ++ +
Sbjct: 797  EAGDAVLHYGC--DDEAAAHAARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRS 854

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +++ +     +V  + H  +         +  +  W A           P+        
Sbjct: 855  TREARRSVLNWLVAGAGHAFDAWLDEPPDEAALEAAWRALAGGPVCVAPLPVPARRERVA 914

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------------------------- 764
               +           +   +   + + S++                              
Sbjct: 915  AGHDASQTLAARHATRVLRDAWRMASFSSLTASMAREEAGVAAVPDDELRPDHDALAAVT 974

Query: 765  -----------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                         +   + +L   +    G  +H+L ++                     
Sbjct: 975  PDGELILADTVAAEPPDDDILVFPRGAAAGECLHRLFELSRFTEPESWHKAALGALHDRP 1034

Query: 814  KLWPAKEYKNLLLSITRLLENP-----------------------------------MMT 838
                      L   + RL+++                                     + 
Sbjct: 1035 VEAEPALAARLPAMMARLVDDVVHTELVPGMRLVDLDPAKRLDEMGFLFPAPSLDLMALR 1094

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH---------HV 889
              +    Y +V++            I G ID I       +I ++K++H           
Sbjct: 1095 RLLVAHGYPDVALEAGTLAG----FIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGPR 1150

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
              +I    + +  Q  +Y   L      +
Sbjct: 1151 ALDIAMADHAYHLQALLYTVALHRYLRGR 1179


>gi|330429634|gb|AEC20968.1| ATP-dependent DNA helicase [Pusillimonas sp. T7-7]
          Length = 717

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 104/627 (16%), Positives = 199/627 (31%), Gaps = 141/627 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y         +DF+DLI     LL+     A +R +    ++++L+DE QDT++ Q
Sbjct: 174 IYRSYSATLAAYQSVDFDDLIRLPAMLLEHN---AEVRQRWQARVHYLLVDEYQDTNVCQ 230

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +++ LT                 AVGD+ Q+IY++ GA  + +               
Sbjct: 231 YRLVQWLTGQ----------RAMFTAVGDDDQAIYAWRGATVENLANLTSDYPT------ 274

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               II+L  ++RS   IL+  ++V S   N  G                       LW 
Sbjct: 275 --LKIIKLEQNYRSVQTILSAANQVISNNPNLFGKK---------------------LWS 311

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
           ++ +    Q  P                +    A  IA           + +   +R  +
Sbjct: 312 ELGAGEPIQVTP--------------MDNDEAEAESIAIR---------LSAARFERRAE 348

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +D  VL R  +   ++    R L+    I    +      D   I+D++A  R I +  
Sbjct: 349 WRDFAVLYRSNQQARILEQALRNLR----IPYTISGGQSFFDKPEIRDILAYLRLIANDN 404

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYI------QKFANCGISKFQHVI 485
           DD +F+  + +P     +  +  +         +++E I       + A   +   Q   
Sbjct: 405 DDPAFIRAVTTPRRGIGQATLQSLGQFAAEHQLSLFEAIFDIGETDRLAAKQLEPLQVFG 464

Query: 486 KYIHELIHIAQFCS-----------------------------------------PHDFF 504
            +I  + + A                                               D  
Sbjct: 465 TFIQGIQNRAGRKREGAVWQPAQSSLELNPSDHEAASMGRVSGVDGAVADSASIILDDLL 524

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             I   +        R        + EF+ +  R  +    +L EL+  +       +  
Sbjct: 525 ATIQYERFLYDTLEERPAQNRWQNVMEFIGWLKRKSEEDDLTLLELVQHVALVTMLERSD 584

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              + + V++ T+H +KGLE P VFL      +  H                        
Sbjct: 585 -DEDPDAVKLSTLHASKGLEYPHVFLAGVEEGLLPH-----------------------M 620

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
            +  ++              +E  RL+YVG+TRA   L +         ++   R     
Sbjct: 621 GRDEDDADPAAAAEALAQRIQEERRLMYVGITRARRSLHLSWCKKRRRAREDVVREKSRF 680

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIA 711
           + +   +   V +     +++  E + 
Sbjct: 681 IEEMGTDQPGVAEDPAAKALSPKERLG 707


>gi|269792359|ref|YP_003317263.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099994|gb|ACZ18981.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 653

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 96/551 (17%), Positives = 171/551 (31%), Gaps = 123/551 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ L   YE   +    LDF+DLI     +L     +     +    I  +L+DE QD +
Sbjct: 169 AQRLFEAYEAKMRSQGALDFDDLIHLPLKILSTHREA---LERELDSIEWVLVDEYQDVN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +++ L+          S  +    VGD  Q+IY + GA+   +L   +  Q    
Sbjct: 226 RSQYMLLKRLS----------SRGQRTVVVGDPDQAIYGWRGADVSMILNFDKDFQ---- 271

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +  L  ++RST  IL   + V +   +    +                     
Sbjct: 272 ----GAKVTVLEQNYRSTGHILEGANCVIARNSDRPKKN--------------------- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW        +    +     +  D            R +   I  + G           
Sbjct: 307 LW------TAASRGEKIRILKARNDEEDS--------RCLVDWILELQGEGYAL------ 346

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               KD+ +L R    + L          +  I           D   IKD++AL R  +
Sbjct: 347 ----KDMAILYRVNALSRLYEQRL----IEAGIPYRVIRGLGFYDRKEIKDVLALMRLAI 398

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-----VYEYIQKFANCGISKFQHV 484
              D +SF  M+  P           +     + E       +  + +       + +  
Sbjct: 399 QPRDLVSFERMVNVPQRGIGAKSTEALWAWMGQLEAQDPGEFWRSVLEGDAPLKGRAREG 458

Query: 485 IKYIHE--LIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEFLNFTLRN 539
           I+ +    L  ++   +       IL      +           E +  ++E ++     
Sbjct: 459 IRALARGMLGILSLRGNIRLAVRYILEEYGYGEHLEREDQSTFEERLQNVEELMSVLPE- 517

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                     +   L +         ++  + V ++T+H AKGLE PVVF+V     +F 
Sbjct: 518 --------GSIDDVLSEVALFSDADVASGDDRVSLLTLHAAKGLEFPVVFMVGLEEGIFP 569

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                                        +S  EE  RL YVGMTRA 
Sbjct: 570 N----------------------------------AKCREDRSLLEEERRLFYVGMTRAQ 595

Query: 660 DQLIICKHSNT 670
           ++L +   +  
Sbjct: 596 ERLFLSGAARR 606


>gi|167824492|ref|ZP_02455963.1| DNA helicase II [Burkholderia pseudomallei 9]
          Length = 525

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 79/504 (15%), Positives = 165/504 (32%), Gaps = 78/504 (15%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
             A    S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVAGKAGSSLASFANLIAKMRAETARMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQELISEL 554
           E +N            L      +
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSI 523


>gi|78356631|ref|YP_388080.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
 gi|78219036|gb|ABB38385.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio
            desulfuricans subsp. desulfuricans str. G20]
          Length = 1067

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 132/932 (14%), Positives = 268/932 (28%), Gaps = 87/932 (9%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
              +L       +  +       ++      L  +       +        S++    +  
Sbjct: 210  AAELKTRMAEHMHALQASAGFLLQGIEREKLAASAHYVNFLKKLPPLGSLSVVPESKMGT 269

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
            K      +  +     S D++    +    +  +       +        +TL   L   
Sbjct: 270  KPDIDDCLNKKSKGTASADMRRAHDELTRAYGWLSREGKLMRRALQQAPFITLINLLTEQ 329

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
             +   K+  ++           +L     ++    ++   + H+L+DE QDTS  QW+ I
Sbjct: 330  AQSMLKQEGLVPNALWPAYARTVLSGEAGASEAFCRMGTRLTHLLVDEFQDTSRDQWQAI 389

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
              L  +            ++  VGD KQ+IYS+ G +           +           
Sbjct: 390  MPLATECLAKGG------SVTYVGDVKQAIYSWRGGDSDLFDGALE--EPELRAICPSPR 441

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG-QVGTVQLWEQVV 315
             + LP ++RS+  ++T  +++F    + Q     +       +     Q    ++     
Sbjct: 442  QLLLPFNWRSSEIVVTTNNRLFEPLGSGQSALAAARAICDDDAPEEVIQEAASRILRSFT 501

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                     +Q S            S+  L   +   +  +I  +           Q +D
Sbjct: 502  GTAQQVPEHRQGSGGLVRLYDLYADSSEDLYESVKEELHRLITEELSGRR------QWRD 555

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I VLVR   +   +          + I ++  +   L DH  I   +A  RF+    D+L
Sbjct: 556  IAVLVRSNPEAGRVAEWLVE----WDIPIITENSLRLADHPLITQTVAFLRFLDYPLDEL 611

Query: 436  SFVCMLKSP-----LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            +   +L            +   +      R +   +    + + +   + F         
Sbjct: 612  ALCEVLCGCELFGGAGGLARASLDGQLATRGDRPLITWLRETYPDIWKTWFAPFY----- 666

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                A   S +D    +          + R        +  FL      +     SL   
Sbjct: 667  --TQAGLMSAYDTVQELFNRF-----MVCRRHPADTVFIRRFLEIVHAADARGLRSLSTF 719

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +   +Q+    K     N + VRIMT+H +KGLE PVV +      + +     +  +  
Sbjct: 720  LEYWQQHGTEEKVPMPDNLDAVRIMTMHKSKGLEFPVVIIPFHHHTLQNDNTPVRTTVDG 779

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                            +    +       +     E   LLYV  TR  D+L       +
Sbjct: 780  QDV-----------MVAACAELGAQWYAARARDACEQLNLLYVAWTRPVDELHAFLGCTS 828

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             NE K+   +   ++                      +W     +     +      + +
Sbjct: 829  RNENKAPMLSALRVML----------GEDYPARGETVQWGETPHAQAAGSSPAGTTADAV 878

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
            +Q            +P +        +    + T                 RG + H  +
Sbjct: 879  QQPCAGSAPC---SAPAEPAAALQNWMPMDWLPTLKIFRNPLEDVVFDERRRGELAHSCM 935

Query: 791  QVI---FTLPEHKRKNFITSYCTKNAKLWP----AKEYKNLLLSITRLLENPMMTTAMSC 843
            + +          R+    +       +      A+E   +L     L + P        
Sbjct: 936  ESLKLTGDTESDIRRAVSHALEKCPFPVPDKESTAQELHGMLRWAASLPDMPR----WLA 991

Query: 844  DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
                E SV         D  +  R+D +        + EYKT              H  Q
Sbjct: 992  HGQPEQSVM------DADGALH-RVDLLVDDGHTRTVVEYKTG--------AQSAAHRQQ 1036

Query: 904  LSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            +S Y  +L+   P      ++IY+   +   +
Sbjct: 1037 VSRYLNLLRQISPV-PAAGVIIYLDLQQTVTV 1067


>gi|242237657|ref|YP_002985838.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech703]
 gi|242129714|gb|ACS84016.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech703]
          Length = 674

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 108/737 (14%), Positives = 233/737 (31%), Gaps = 136/737 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I  + +L +E      L  A  ++        +++ +
Sbjct: 59  AAREMKERV-AQTLGRKETRGLMIATFHTLGLEIIKREYL--ALGMKSNFSLFDDQDQLA 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K +  Q +      L++ +    +    +        M +S     
Sbjct: 116 LL------------KELTEQWLQNDKDLLQQLISAISNWKNDLMGPEQAMGMARSERD-- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L  +    Y++  +   VLDF+DLI+    L  + + +   R +  Q I ++L+DE QD
Sbjct: 162 RLFAHCYRLYDDHLRACNVLDFDDLILLPTLLFLRDEPA---RERWQQRIRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+++ L            +      VGD+ QSIYS+ GA P+ +   ++     
Sbjct: 219 TNTSQYELVKMLVG----------ARARFTVVGDDDQSIYSWRGARPQNLSLLQQDFPA- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I+L  ++RS+  IL   + + +   +                        
Sbjct: 268 -------LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRL-----------YSELGYG 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +L     +  D +                        A R+            + ++  
Sbjct: 310 TELKIITANNEDDE------------------------AERVV---------GELIAHHF 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q  D  +L R    + L   +        +I    +          IKDL+A  R 
Sbjct: 337 INKTQYGDYAILYRGNHQSRLFEKVL----MQNRIPYRISGGTSFFSRPEIKDLLAYLRV 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISK 480
           + + +DD +F+ ++ +P        + K+    R     ++            +  G+  
Sbjct: 393 LTNPDDDSAFLRVVNTPKREIGPATLQKLGEWARQRNRGLFSASFDVGLSQTLSGRGLES 452

Query: 481 FQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
            Q   +++ ++  +A+        D    +       +   S    E  +  +++   + 
Sbjct: 453 LQRFTRWMDDIARLAEREPVKAVRDLLHGLDYESWLYETSTSPKAAEMRMKNVNQLFTWM 512

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  + +    L ++++         +       ++V++MT+H +KGLE P V+LV 
Sbjct: 513 TEMLEGSDLDEPMPLTQVVTRFTLRDMMERNESEEELDQVQLMTLHASKGLEFPYVYLVG 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +  H+                                       +   +E  RL Y
Sbjct: 573 MEEGLLPHQTSID-----------------------------------EDNVDEERRLAY 597

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA   L            +  +      + +   +D   +  +   S  +      
Sbjct: 598 VGITRAQKALTFTLCRERRQYGELVRPEPSRFLLELPQDDVVWESGRREVSPQERMQKGQ 657

Query: 713 EWSTHHPENTPLEREET 729
               +        R++ 
Sbjct: 658 NHLANLRAQLAKARDKP 674


>gi|226951858|ref|ZP_03822322.1| exonuclease V, beta chain [Acinetobacter sp. ATCC 27244]
 gi|226837398|gb|EEH69781.1| exonuclease V, beta chain [Acinetobacter sp. ATCC 27244]
          Length = 1237

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 139/1011 (13%), Positives = 288/1011 (28%), Gaps = 171/1011 (16%)

Query: 50   AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
             ++L Q  +     E   +  ++F   +    K +   +  K       ++     +   
Sbjct: 274  CESLPQLLKALLETENVQVFDAYFAGARDAAFKFLDKLDGQKIFKKCPAEVADGFYQHPT 333

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYE---------EAKKKNCVLDFEDLIINTNDLL 160
            I          K T       +     Y          +  ++     F   I   +D L
Sbjct: 334  ILHIQKLCHSLKETQQQFEQLQVYLKAYLCIEVKKRLPQVLQQKGETTFAQQIKTLSDAL 393

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            K      +  + +      IL+DE QDT+  Q +++ ++                +  VG
Sbjct: 394  KGDQGQRFAVF-VHARYPLILVDEFQDTNQDQDDMLATIWR-----HPQRYQKGCMIMVG 447

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D KQ+IY F G +    L   +          +     +L  + RS  +++ VVD +F  
Sbjct: 448  DRKQAIYGFRGGDMLTFLNAYQDI------MSKSGREYKLIHNHRSVKELVEVVDVLFQR 501

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
              +              R                    + Q NP    W    D   Q  
Sbjct: 502  QMDFGEQVLYDPIQAGSRPHPA-------------LIENGQLNPAPLRWLQLQDGNEQ-- 546

Query: 341  SASILARRIAYTISNMIGTDTI----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                 A ++A+ I +++    +          +VI   DI VL R  +    + +    L
Sbjct: 547  -----ATQVAWKIQSLLNQAHLQQLYLDGENHQVISEDDIAVLSRSHRQLDEVQYALERL 601

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 I V    +  + D    +D+ AL   +L   D+      L S LF F    +  +
Sbjct: 602  ----GIRVNRPSKRSVFDSKIAQDVGALLTALLHPYDEAKLKRALLSRLFGFDLSQLVAL 657

Query: 457  CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                                      H I+   ++  +         +   L   +  QQ
Sbjct: 658  EQSA------------------EGLSHYIQQFDDIREMWLNQGFLVAWQRCLNQFEIWQQ 699

Query: 517  FISRFGNEVID---VLDEFLNFTLRNEQ--NSYSSLQELISELEQYPPTIKRAHS---AN 568
             ++    +       L    +   ++ +      +L     +    P   +       ++
Sbjct: 700  LVATQSKDNERAVVNLRHLTDILSQHSEHVQGIHNLYHWYLKQLHSPSDREWELEHKLSS 759

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP--SLNDDPGIPIWIPQSK 626
               V++MT+H +KGLE  +VFL+         +                      +    
Sbjct: 760  EAGVQLMTIHQSKGLEFKIVFLLGANKAFSEMQKTLNFSTTEIQVPETGQTRTQRVVAIA 819

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
             +N +    +   ++  Q E NRL YV +TRAS ++         ++ K +      + +
Sbjct: 820  DKNFLQQTELDQHQQRAQAEQNRLWYVALTRASHRVYAIFEPEKGDKNKLSG-----LAF 874

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ-LMDEQKIPKKLFS 745
               H D       + + +  +   +       PE          ++     +     L  
Sbjct: 875  WKNHGDIFQHPYSVEDHLLLERPASLRTQETQPERLLAAEPLPTQRFYARGKTSFSYLAQ 934

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLS----------------DNQTFNRGLIIHKL 789
             +K+  N    L  +        +  +LL+                  +    G  +H++
Sbjct: 935  HLKHKANRLDRLANADQQFDQAEDEINLLTVESVAVSQPIAWIKYYFPKGTLAGNFLHEI 994

Query: 790  LQVIFTLPEHKRKNFITS------------YCTKNAKLWPAKEYKN------LLLSITRL 831
             + I           I                 +  + +P +E         + L +  +
Sbjct: 995  FEQIDFQHPETWIEEIRRRFKNTYQGLWVALLEQYQQHFPEQENAEQQLYQWIALWLADV 1054

Query: 832  LENP-----MMTTAMSCDSYSEVSVSGKINCPK------------------------KDI 862
            L+ P      +   +     SE      ++                              
Sbjct: 1055 LQTPLNQGFQLQQLVVGQYLSECPFYLALSDRVLAMQRVQQLFEEYDIQMPEFIDAKSAR 1114

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPY-----THIAQLSIYEKILKD 913
             ++G ID +    Q   I +YK+++    + +     I       ++  Q ++Y   L  
Sbjct: 1115 YLNGSIDLVFFDGQRYHIADYKSNYLGENQADYQSTQIAESMSLSSYWLQAALYLVALHR 1174

Query: 914  SYPNK----SLV-----CLLIYVSE-------PKVFIIPQNKLNKAFAEIS 948
                K     +         +Y+            +  P+++       I 
Sbjct: 1175 YLSVKLQNYRIEQHLGGASYLYLRGMNGQADQGYFYWKPEDEFVLRLDAIL 1225


>gi|119714519|ref|YP_921484.1| exodeoxyribonuclease V, beta subunit [Nocardioides sp. JS614]
 gi|119535180|gb|ABL79797.1| exodeoxyribonuclease V, beta subunit [Nocardioides sp. JS614]
          Length = 1111

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/975 (12%), Positives = 276/975 (28%), Gaps = 151/975 (15%)

Query: 19   DLWPLPYFQV--SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
              W     +     + + ++        T  +    +  +       +  + L       
Sbjct: 106  RSWGADERRRGHRRVTEALAGFDAATIATTHQFCSMVLDSLGVAGDTDSRARLVEDLDDL 165

Query: 77   KFTPQKNIITQEINKKSPDL--KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKY 132
                  ++  +      P     E +  ++      + R       +ST+A   ++ A  
Sbjct: 166  VKETVDDLYLRAFADAEPAFTHDEAMAIARAAVGDPQARLEPAGADRSTIAGRKVSFADA 225

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            +    +  K++  +L ++DL+    D L +   +A    ++      +L+DE QDT  +Q
Sbjct: 226  VRTELDRRKRRLGILSYDDLLSQLADALAQPGSAA--AQRMRARWRIVLVDEFQDTDPVQ 283

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            WEV+              S   T+  +GD KQ+IY+F G +    LR           A 
Sbjct: 284  WEVLDR----------AFSGHATMVLIGDPKQAIYAFRGGDVTTYLR----------AAE 323

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +   L ++ RS   +L  V  + +  E           T  H  SR+        + 
Sbjct: 324  TAQTRQTLAVNRRSDGPLLAAVQTLLAGAELGDERIVVHDVTAHHGESRLAGAPVPHPFR 383

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
              V + D+              +L        +AR +A  +  ++ +   +       I+
Sbjct: 384  LRVVRRDT-------FGRRGGSTLTVGQVRPHVARDLALDVRRLLASGATW---CGEPIR 433

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +D+ V+  +  D   +    R    +  +  V      +    A  + + L   +    
Sbjct: 434  PRDVAVISYRHADLATV----REALLEVGVPAVIAGGGSVFATPAAIEWLTLLEALEQPH 489

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
                      +  F  +  ++      R +  T            +   + +   +    
Sbjct: 490  RSTRVRSAALTCFFGHTAVELD----ARGDDLTDEVADTLRGWVELFAGRGLAAVLEAA- 544

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL-- 550
                  +       +L    G ++         +  + E L+      ++   SL     
Sbjct: 545  ------NVAGLPERVLAEIGGDRRLTD------LRHIGEALHEVTLVARHGLPSLLTWLR 592

Query: 551  ---ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
                           R   ++   V+++T+H +KGLE PVV++     +           
Sbjct: 593  GQVTEGRAGRGVERTRRLDSDAAAVQLVTIHASKGLEYPVVYVPALADRFVPKPTR---- 648

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
              P  +DD G           ++  +D  +        E+ RLLYV  TRA  Q++    
Sbjct: 649  --PLFHDDGGTRCLDVGGARSDDGWADHCRRWADEEAGEWLRLLYVATTRAKSQVVAWWA 706

Query: 668  SNT-------------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                              +    + +       +  +D+ V  +                
Sbjct: 707  PTKNAVASPLHRMLMRDGDGPDGEMSASVPAAPAVPDDDAVVTLFSRWRERGGPSPEAAI 766

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-------------- 760
                  + P      +      + I  +      + ++   +  P+              
Sbjct: 767  HADPGADPPRPATPDLAARTFTRTIDTEWRRASYSSLSRVEVAAPAGAVVSEPEITGKED 826

Query: 761  -TIDTKGKTNLESLLSD--------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
              +  +       L SD              G ++H +L+         R   +     +
Sbjct: 827  EALAPEAVPVAPLLASDVPSPMAGLPVGATFGSLVHAVLEHTDPEAVDLRAELLGHIDEQ 886

Query: 812  NAKLWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKKD-- 861
                    + + L  ++  + ++P+        +      D   E+     +        
Sbjct: 887  LGWWPVDLDREELADALVAVCDSPLGPLAAGTTLRQVTLGDRLREMEFELPLGDGLLGDL 946

Query: 862  -------------------------------IIISGRIDQIS----ISQQNIFIFEYKTH 886
                                             ++G +D +      +     + +YKT+
Sbjct: 947  RPLLERHLPPGDPVRAYTAHLDGPLGEQTLRGYLTGSVDVVLRLRSEAGPRYLVVDYKTN 1006

Query: 887  HHVPQEIEHIPYTHI 901
               P +     +++ 
Sbjct: 1007 WLGPTDEPLTAHSYA 1021


>gi|239908825|ref|YP_002955567.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239798692|dbj|BAH77681.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 624

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 98/567 (17%), Positives = 183/567 (32%), Gaps = 127/567 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YEE K    + DF+DL++     L     +     K      HIL+DE QDT+
Sbjct: 157 TAMVFKEYEEQKAIRYLYDFDDLLLQAYRFLAYEGGAE----KYHDVYPHILVDEYQDTN 212

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q  V+++L ED        S   + +A GD+ QSIY+F+GA    +LR K+I      
Sbjct: 213 PAQLAVLQALIED--------SGRGSFWACGDDWQSIYAFNGASIGNILRFKQIFP---- 260

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I L +++RST  IL    K+    +            I          G   
Sbjct: 261 ----SAQEIVLNVNYRSTPAILAACQKLIDHNQ----------RKIPKELIAHKPGGNHD 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM-IGTDTIFSNGKK 368
           L+       + +                        A  +A  I ++ +   T       
Sbjct: 307 LFVIDTFNEEEE------------------------ACLVANEIKHLSLSDGTA------ 336

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 D+ VL R    +     + + +     I    ++     +   ++ L+   RFI
Sbjct: 337 ----YSDMAVLYRANFQS----EILQNVFVRAGIPFYIDNGMSFYERREVRILLEYLRFI 388

Query: 429 LSQED---DLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC---GISKF 481
              +    D +   ++ +P     +  + ++         ++Y+ ++             
Sbjct: 389 EDPDSVAGDEALQRIINAPNRYLGKKFLEQVAGVANESACSLYQALRTMDFDSPYIRRNV 448

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTL 537
              ++ +   I       P +    +       +           N+ +  L++ L    
Sbjct: 449 HEFVRLMESFIQNEGEMGPAEVLAKLRQRLDYDRFVTDKDIPSPDNQAVLNLNQLLQSAA 508

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           R      +S+ E ++ +             + + V++MT+H AKGLE PVVF+V     +
Sbjct: 509 RY-----ASISEFLTYVATVEDETCSR---DPSGVKLMTIHKAKGLEFPVVFVVGLVEGI 560

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
              K                                           EE  R+ +V ++R
Sbjct: 561 MPTKRG---------------------------------------DLEEERRICFVALSR 581

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDM 684
           A D+L +    N   +         +M
Sbjct: 582 AMDRLYVTYSHNYLGQPAKRSIFIDEM 608


>gi|188574507|ref|YP_001911436.1| ATP-dependent DNA helicase Rep [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188518959|gb|ACD56904.1| ATP-dependent DNA helicase Rep [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 640

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 96/649 (14%), Positives = 203/649 (31%), Gaps = 131/649 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K+++         D K  + ++++  +         +  +        A  L   Y+   
Sbjct: 101 KDLMHGAKPDAIEDAKNLISRAKNAGLSPEQAMVAARSNREKE-----AASLYERYQARL 155

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
                +DF+DLI     +L+  +    I     + I ++L+DE QDT+  Q+ +++ L  
Sbjct: 156 TTFNAVDFDDLIRLPVQILEANED---IVMGWRERIGYLLVDECQDTNDAQYRLLKMLAG 212

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                            VGD+ QSIY++ GA P+ + +  R              II+L 
Sbjct: 213 ----------PRGNFTCVGDDDQSIYAWRGANPENLQQMARDYPA--------LKIIKLE 254

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++R +  +L   + + +   +    +  S                +++W          
Sbjct: 255 QNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGERIRVW---------- 295

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                           +   +   A ++A  IS +         G  + +   D  +L R
Sbjct: 296 ----------------ECRDSEHEAEKVAAEISFL---------GTAKQVSWSDFCILFR 330

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +    + L+    +           +   +KDL++  R I++ +DD +F+  +
Sbjct: 331 GNFQSRPLEKALQLLR----VPYHLTGGTAFLERQEVKDLLSWLRLIVNPDDDAAFLRAV 386

Query: 442 KSPLFNFSEDDIFKICTQR-------HETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
           +SP        + ++                    +Q       +        + ++   
Sbjct: 387 QSPKREVGATSLARLAELASAKSVPMSRAAESMGALQHLPPRAANGLSAFTDIVRDMREH 446

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRNEQN-SYSSLQ 548
           +      +    +           ++  +E         LDE        E     +S  
Sbjct: 447 SASMPAGELVRTLAEKSGLLNDLRNQSKDETGFQRRKRNLDEL---AEWFEGGPRGASAS 503

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +L ++L       +       N+VR+MT+H +KGLE   VF+V     V  H+       
Sbjct: 504 DLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCEDGVLPHEVSL---- 556

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH- 667
                                          ++   +E  RLLYVG+TRA +QL +    
Sbjct: 557 -------------------------------EEGNLQEERRLLYVGITRAKEQLWMSHSK 585

Query: 668 --SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                    +     ++D +       +    +       +        
Sbjct: 586 LTRKFGEHVRLKPSRFFDEIPAEELQRDGADPVADAERKKERASAGLAA 634


>gi|50083654|ref|YP_045164.1| exonuclease V beta [Acinetobacter sp. ADP1]
 gi|49529630|emb|CAG67342.1| exonuclease V, beta chain [Acinetobacter sp. ADP1]
          Length = 1234

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/945 (12%), Positives = 253/945 (26%), Gaps = 148/945 (15%)

Query: 52   TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
              + + +              F               +  +   + + L+  Q +F ++ 
Sbjct: 295  AFKASREAADKFIEKLEQEKIFKKCPADVSDGFYQHAVVAQLKQVIQTLQHYQAQFEQLD 354

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                 Y   +           +     +  ++     F   I    + LK  +       
Sbjct: 355  HALKAYLCIE-----------VKQRLPQVLQEKGETTFSQQISTLAEALKG-EQGQRFAI 402

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
             +      IL+DE QDT+  Q +++ S+                +  VGD KQ+IY F G
Sbjct: 403  FVQARYPLILVDEFQDTNQDQDDMLASIWR-----HPQRYQKGCMIMVGDRKQAIYGFRG 457

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             +    L   +          ++    +L  + RS   ++ VVD +F    N        
Sbjct: 458  GDMLTFLNAYQDI------LHKQGREYKLSQNHRSVKPLVEVVDALFQRQPNFGEQVIYD 511

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                  R+                    +Q N     W    D   +       A ++A+
Sbjct: 512  PIQAGSRAHPA-------------LMDRAQVNTAPLRWIMLQDKASE-------AEQVAW 551

Query: 352  TISNMIGTD-----TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I  ++         +        I A DI VL +  K    +     +L     I V  
Sbjct: 552  KIRALLNQASSGELYLKDGSVHHSIIADDIAVLSKNHKGLDDVQAALEYL----NIKVNR 607

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
              R  + DH+   D+ A    IL   D+      L S L  F  + ++++          
Sbjct: 608  PSRRSVFDHVVAHDVGAFLTAILFPYDEAKVKRALLSRLMGFDLERLYQLEQS------- 660

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
                              +  +  L  I         +   L   +  Q   ++   E  
Sbjct: 661  -----------PVGLSDYMNQLDGLREIWLHQGFLPAWQRGLNIFQVWQNLGAKHSRENE 709

Query: 527  D------VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR--AHSANHNEVRIMTVH 578
                    L E L+      Q + +     + +L              ++   V++MT+H
Sbjct: 710  RAVVNLRHLSELLSKHSEQYQGAQNLYHWYLKQLRSPSEREWELERKLSSDAGVQLMTIH 769

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI--PQSKSRNNIVSDLI 636
             +KGLE  +VFL+     +              L++  G            +  +  + I
Sbjct: 770  QSKGLEFKIVFLLGADKPLRDQNKDLNFSRAEILDESTGQMQTKRVIAIADKTQLTPEAI 829

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIIC------------KHSNTSNEKKSNQRTWYDM 684
                +    E NR+ YV +TRAS ++                     +    ++ +  + 
Sbjct: 830  IQHTERATAEQNRIWYVALTRASHRVYAMLHDPQQKSKDALAFWKNQDSPFLHEYSIEEA 889

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +         V +      I         +      +     +    ++     +     
Sbjct: 890  LLMQCPEPLTVHETPQKILIYAAPLPQQRFYPRGKTSFSYLAQHLKPRVSYADTLVSMQT 949

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
             P + +       +        +       +  +    G  +H++ + I      +    
Sbjct: 950  RPEQAEDERDTTTSIQYSQAAIQPIAWIKQNFPKGTLAGNFLHEIFEHINFNQTEEWITE 1009

Query: 805  ITSYCTKNAKLWPA---------------------KEYKNLLLSITR--LLENPMMTTAM 841
            I      +                           +   + L  + +  L ++  +    
Sbjct: 1010 IRRRFKNDYGSLWEMLYPVYIDAFPELNGDENRLYQWLADWLDDVLKTPLHQDFQLKQLQ 1069

Query: 842  SCDSYSEVSVSGKINCPK------------------------KDIIISGRIDQISISQQN 877
            S    SE      ++                               ++G ID +    Q 
Sbjct: 1070 SGQFLSECPFYLALSDRVLAMRRIQQLFIEYHIEMPEFLDAYSARYLNGSIDLMYFDGQR 1129

Query: 878  IFIFEYKTHHHVPQE---------IEHIPYTHIAQLSIYEKILKD 913
              I +YK++     +               ++  Q ++Y   L  
Sbjct: 1130 FHIADYKSNFLGTDQTHYDGLAIRENMTHSSYWLQAALYLVALHR 1174


>gi|32266857|ref|NP_860889.1| DNA helicase II [Helicobacter hepaticus ATCC 51449]
 gi|32262909|gb|AAP77955.1| DNA helicase II [Helicobacter hepaticus ATCC 51449]
          Length = 704

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 101/565 (17%), Positives = 187/565 (33%), Gaps = 116/565 (20%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             L   +   YE       +LDF+DL+  T  +L K D    I  ++ ++ ++I++DE Q
Sbjct: 175 YKLMNRIYGEYENYLLNKNLLDFDDLLYLTYAILLKND---NIAKQMSEKYHYIMVDEYQ 231

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ IQ+++++ L            +   L  VGD+ QSIY + GA  K +L   +   +
Sbjct: 232 DTNEIQYKILKRLCL----------AHTNLCVVGDDDQSIYGWRGANVKNILGFPKEFDE 281

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +++L  ++RS+  IL   + + S      G +  S               
Sbjct: 282 --------VKVVKLEENYRSSEQILNAANALISHNSKRLGKNLKSIKGAGANV------- 326

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                        + +  + S  A  +A  I  ++         
Sbjct: 327 ----------------------------RVIESENESTEAEFLAKDILTLLSQG------ 352

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               I   +I VL R    +  I        N  KI           +   IKDL+   R
Sbjct: 353 ----INPSEIAVLFRVNALSRSIEEGF----NRAKIPYKIIGAVRFYERAEIKDLLCYLR 404

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKF-QHV 484
            I++  DD SF+ ++  P     +    K+    R    + +  I ++         +  
Sbjct: 405 LIVNPNDDYSFLRIINRPRRGIGKITQLKLEELARTFNTSCFSSITQYTQQSKEAIGEKA 464

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQN 542
              + EL    +    +     ++   +    F     +EV     ++EF          
Sbjct: 465 YNALLELTQNIERWRKYTDLADVIEDMQEHIVFTFSRLDEVDRKGNIEEFYGMFRDYAIA 524

Query: 543 SYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           + S+ +++ ++++    PT           V  M++H AKGLE   V+++     +F   
Sbjct: 525 NPSNQVEDFLNDIALASPT----DELTGEYVSCMSIHMAKGLEFKYVYVIGFEEGIFP-- 578

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +   +E  RL YV +TRA D 
Sbjct: 579 -----------------------------------LWNDEDEIQEERRLGYVAITRAKDF 603

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVY 686
           L +C   +     K         + 
Sbjct: 604 LTLCSAKSRLRRGKREWLEQSRFLR 628


>gi|115351152|ref|YP_772991.1| exodeoxyribonuclease V subunit beta [Burkholderia ambifaria AMMD]
 gi|115281140|gb|ABI86657.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria AMMD]
          Length = 1234

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/985 (12%), Positives = 266/985 (27%), Gaps = 131/985 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             +W      +  + +    ++   +      A  L   +      +  + L    L    
Sbjct: 240  RMWADERDAIDALLRAAQPALNQRSHKPDALADALGAWTAHFAQGDAAAALPKAALKLTR 299

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T       +          +     +              +        T    L     
Sbjct: 300  TALAKATKKGGVTPEHAFFDVADALEAAVAAAEATQRARWLALIADWLDTAPGELAER-- 357

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 358  --KRTRRVVSFDDLLANLYHALHAHP---WLAETLRARYPAALIDEFQDTDPLQFAIFNR 412

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 413  IFA----------PGGPLFLVGDPKQAIYSFRAADLHTYLAARA----------SASACY 452

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   ++ F     A  L       +R           V+      +  
Sbjct: 453  TLAVNQRSTPAIVDACNRFFMSNPRAFVLDGLDYYAVR-------AGTRVRAPFVDATDP 505

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDIL 377
                + +  +      +L +  + +  A+  A  I+ ++              +   DI 
Sbjct: 506  GPSGDFRIWALPGGDGTLLKRDAQAQAAQACAAEIARLMRGAREGHARLGDTPLSPGDIA 565

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VLV+  +   L+  +       + I  V   +  +      + L  +   I +  D    
Sbjct: 566  VLVQTHRQGSLVKRVLAT----WGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLRRL 621

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHE--TETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
               L +  F      ++++     +   E              S+++ + +     +   
Sbjct: 622  RSALAADWFGLDAGALWRMEQGDGDASREAADSADAMSWVERFSRYRLLWRERGFAVMWR 681

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-EL 554
             F         ++    G ++            L E        +     +L+ L +  L
Sbjct: 682  TFTRELRIAERLMAGADGERRVTDIN------HLAELTQARASAQPGIAPTLRWLAAQRL 735

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +      +    ++ N V+I+TVH +KGLE  VVF                +      +D
Sbjct: 736  DGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPASGLPDAREYHD 795

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSN 672
            D G  +        +       +   +    E  RL+YV +TRA  +  +    + ++ +
Sbjct: 796  DAGDAVLHYGC--DDEAAEHAARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRS 853

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +++ +     +V  +  + +         ++    W A           P+        
Sbjct: 854  TREARRSVLNWLVAGAGQSFDAWLDEPPDEAVLDAAWQALAGGPVSVAPLPVPARRERLA 913

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------------------------- 764
               +           +   +   + + S++                              
Sbjct: 914  AGHDATQTLAARHATRVLRDAWRMASFSSLTASMAREEAGVAVVPDDELRPDHDALAAVT 973

Query: 765  -----------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                         +   + +L   +    G  +H+L ++                     
Sbjct: 974  PDGAFVAVDTIATEPPDDDILRFPRGAAAGECLHRLFELSRFTEPDSWHQAALGALHDRP 1033

Query: 814  KLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII- 863
                 +    L   + RL+++           +          E+         +   + 
Sbjct: 1034 VEAEPELATRLPAMMARLVDDVVRTELVPGMRLADLDPARRLDEMGFLFPAPSLELGALR 1093

Query: 864  ---------------------ISGRIDQISISQQNIFIFEYKTHH---------HVPQEI 893
                                 I G ID I       +I ++K++H             ++
Sbjct: 1094 RLLVAHGYPDVALDSGMLAGFIKGFIDMIVEHDGRFWIVDWKSNHLGNTPDAYGPRALDV 1153

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNK 918
                + +  Q  +Y   L      +
Sbjct: 1154 AMADHAYHLQALLYTVALHRYLRGR 1178


>gi|220915236|ref|YP_002490540.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953090|gb|ACL63474.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 797

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 116/803 (14%), Positives = 227/803 (28%), Gaps = 139/803 (17%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + L PL     V   + + +  +             L  +      +++ 
Sbjct: 72  AAGEMRERLERLLGPLARELWVQTFHAFGARFLRREAAR-----AGLSPSFAIYDDDDQL 126

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+            + +  +++  +    K +  ++ +  +   D              
Sbjct: 127 RLVKGLLSELGLDEGEGLTPRQVLSQIDRWKNQALRAAEVKVAGLDPEAAR--------- 177

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
               K +   YE+A  +   +DF DL++    LL++    A +R +      ++L+DE Q
Sbjct: 178 ---TKEVYHRYEQALARAGAVDFGDLLLRPVRLLEED---AALRARWAGRFRYLLVDEFQ 231

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q+ +++ LT             R +  VGD+ Q+IY + GA+   +L        
Sbjct: 232 DTNPVQYRLLQLLTG----------PRRNVCVVGDDDQAIYRWRGADVSNILGFDGDFP- 280

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +++L  ++RST  IL     V S     +                     
Sbjct: 281 -------GTKVVKLEQNYRSTRTILDAAHAVISRARRRRDKRLW---------------- 317

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                +     D   +       A RIA  ++   G  T     
Sbjct: 318 ------------TESGAGAPLALLVGEDEHAE-------AERIARAVAAERGRGTSGD-- 356

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   +I VL R    +  +    R      +I  V        +   ++D  A  R
Sbjct: 357 --------EIAVLYRTNAQSRPLEAAMRA----ARIPYVIVRGTSFYERAEVRDAAAYLR 404

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGIS 479
             LS   DL    ++  P     +  + ++            E     + + +       
Sbjct: 405 LALSPASDLDLERVVNRPPRGIGDKTVERLRAHAAARGLPLVEAVAERDAVAELKPAARR 464

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFT 536
                   +  L               +L       +      +   E  + L E +   
Sbjct: 465 ALAEFHALVTGLAADVPALDAGVAVQEVLKRSGMLARLEEEHTDEAVERAENLAELVAAA 524

Query: 537 LRNEQN----------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
              +++                 L   LEQ     +   +     V +MT+H AKGLE  
Sbjct: 525 REFDESIAGEPPPGDPEEVRPPPLARFLEQIALLGEADAATPEGRVALMTLHAAKGLEFE 584

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VFL         ++                               +D     +  + +E
Sbjct: 585 AVFLAGMEDGTLPYERP----------------------------WADQTASERDESLDE 616

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YVGMTRA  +L I          ++     Y  +  S    +   ++       +
Sbjct: 617 ERRLCYVGMTRAKRRLTISLARRRIGYGENGPS--YRNMEPSRFLRDLPPELFGDAVARE 674

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                   +        + R     +     ++     S             P    T  
Sbjct: 675 VRAREAARAAPVARPPTIRRLPGALEGEPHIELDGDELSQPAAPAPRARPAAPRGEPTVD 734

Query: 767 KTNLESLLSDNQTFNRG-LIIHK 788
            +  +   +    F+RG  + H 
Sbjct: 735 YSFDQRGDAGAAAFSRGERVAHA 757


>gi|311103603|ref|YP_003976456.1| ATP-dependent DNA helicase Rep [Achromobacter xylosoxidans A8]
 gi|310758292|gb|ADP13741.1| ATP-dependent DNA helicase Rep [Achromobacter xylosoxidans A8]
          Length = 677

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 104/616 (16%), Positives = 199/616 (32%), Gaps = 115/616 (18%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              ++   +   A  +   Y         +DF+DLI     LL   +    +R +    +
Sbjct: 147 AAREAITPADVEAANVYRSYAATLAAYQAVDFDDLIRIPALLLANNEE---VRTRWQNRV 203

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            ++L+DE QDT++ Q+ +++ LT           S     AVGD+ Q+IY++ GA  + +
Sbjct: 204 RYLLVDEYQDTNVCQYRLVQLLTG----------SRAMFTAVGDDDQAIYAWRGATIENL 253

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            +                 +I+L  ++RS   IL   ++V             S   +  
Sbjct: 254 AKLTTDYPN--------IKLIKLEQNYRSVQRILAAANQVIEKNPKLFDKKLWSDLGV-- 303

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                G+   V                                     A  IA  +S   
Sbjct: 304 -----GEPILV----------------------------SAMDGEEQEAESIAMKVSA-- 328

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                  +  +R  Q KD  +L R    + ++    R LK    I    +      D   
Sbjct: 329 -------SRFERQAQWKDFAILYRSNHQSRILEQALRNLK----IPYTISGGQSFFDKTE 377

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---- 472
           ++D++A  R + + EDD +F+    +P     +  +  +         ++   + +    
Sbjct: 378 VRDVLAYLRILANDEDDPAFIRAATTPKRGIGQATLQTLGQYAASRELSLLAAVAETGLE 437

Query: 473 --FANCGISKFQHVIKYIHELIHIAQFCS---------------PHDFFTLILGAKKGRQ 515
              A   +   +   ++I  +   A   +                 D    I   +   +
Sbjct: 438 SQLAPRQLEPLRTFTEFIRRMQWRAGRGAASGKDAAPAEPAGVLLDDLLEAIQYERYLYE 497

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            F  R        + E   +  R  +    +L +L+  +       +       + V++ 
Sbjct: 498 LFEERPAQTRWQNVLELTGWLKRKAEEDNMTLFDLVQHVALVTMLERGE-EEEPDAVKMS 556

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE P V+L      +  H         P                         
Sbjct: 557 TLHASKGLEYPHVYLAGVEEGLLPHLGKDDEVGDP-----------------------AR 593

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                 S  +E  RL+YVG+TRA   L +         ++   R     + +    D RV
Sbjct: 594 AAENLASRIQEERRLMYVGITRAQRSLNLSWCKRRRRAREDLVREPSRFIEEMGLGDVRV 653

Query: 696 KKIKLTNSINKDEWIA 711
           ++ + T ++N  E +A
Sbjct: 654 QEDEATAAMNPKERMA 669


>gi|262370059|ref|ZP_06063386.1| exonuclease subunit V [Acinetobacter johnsonii SH046]
 gi|262315098|gb|EEY96138.1| exonuclease subunit V [Acinetobacter johnsonii SH046]
          Length = 1250

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 126/962 (13%), Positives = 263/962 (27%), Gaps = 131/962 (13%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91
            +  +     T         Q L         +  ++L +  F             + +NK
Sbjct: 264  HAVLGKKWRTDALIQRILCQDLPAFLTALKEQRAYALFAPHFEKTLKHLTDLATKKVLNK 323

Query: 92   KSPDLKEKLKKSQDE-----FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
             + D+ E+ ++         F++                   L+  +     +  ++   
Sbjct: 324  CAVDVLEQFEQHPVWRQVRSFLEALAELELNLDVLDAYLKYHLSSEVKKRLPQVLQQKSE 383

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
              F   I   ++ L+      + ++ +      IL+DE QDT+  Q +++  +  D    
Sbjct: 384  TTFAQQIRTLSEALQGEQGRRFAQF-VQARYPLILVDEFQDTNQDQDDMLARIWRDV--- 439

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                     +  VGD KQ+IY F G +          N+ R     +      L  + RS
Sbjct: 440  --QRYHQGCMIMVGDPKQAIYGFRGGD------MLTYNKARLDVLAKHGRQYSLKYNHRS 491

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
               ++ VVD +F   ++              R                        N   
Sbjct: 492  VQKLVQVVDALFQRQQDFGEQVYYQPVEAGTRPHPA-------------LVDAQGENHVP 538

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
              W    D   +   A  +A +I   I+  I      ++   + I A DI VL +     
Sbjct: 539  LRWLLLEDKKNE---AQQVAWKIRDLINQGIQQQLYVADDPLQFIGANDIAVLSKNHDGL 595

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                   +F      I V    +  + +    KD+ AL   ++   D+      L S L 
Sbjct: 596  ----DKVQFELERLGILVNRPSKRSVFESQVAKDVGALLTAMMHPFDEAKVRRALLSRLL 651

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                  + ++                      +     +    ++  +         +  
Sbjct: 652  AIDLKQLLEL------------------EKQANGLSQFMADFDDIRDMWINKGFLSAWQY 693

Query: 507  ILGAKKGRQQFISRFGNEVI------DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
             L   K  +  ++    +          L E L+      Q +       + +L      
Sbjct: 694  ALNLFKVWKNLVAYQSRDNERTVVNLRHLTELLSQHSEQFQGAQKLYHWYLKQLHLPAER 753

Query: 561  IKRAHSANHNE--VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN--DDP 616
                     N   V++MT+H +KGLE  +VFL+                 +  +N     
Sbjct: 754  EWELERKLSNATGVQLMTIHQSKGLEFKIVFLLGADKDFKEMNKTLNFSTLEQINPTTGQ 813

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                 I      N +    I    +  + E +RL YV +TRAS ++      +   +  +
Sbjct: 814  SELQRIVAVNDANLLDPAAIDQHNERAEAEQHRLWYVALTRASHRVY-ALLQDQEYKSNT 872

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                W     + F +     ++ LT    + +   ++           E+    +     
Sbjct: 873  ALTFWRGQAGNLFEHPASGNEVLLTEKPIRLQPAEHQEIIQLQALAFPEQRFYPRSKTSF 932

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-----------DNQTFNRGLI 785
              + + L      D          + D +    +   +                   G  
Sbjct: 933  SALAQHLSRREAMDALAVLSEKVGSADDEINHPVLEDVELIQPLAWIKRQFPMGTTAGTF 992

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN----------------LLLSIT 829
            +H++ + I           I      ++ L   +                    +   + 
Sbjct: 993  LHEIFEHIDFQDSGDWGLEIHRRFKNDSPLLWQELLGKYQNEFGQDDETQLVLWMQAWLA 1052

Query: 830  RLLENP-----MMTTAMSCDSYSEVSVSGKINC------------------------PKK 860
             +LE P      +    + +  +E      ++                            
Sbjct: 1053 DVLETPLHAGFQLKQLKADEHLAEFPFYLSLSDHVLAIKRIQTLFQEYGIDLLDLNEANS 1112

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKIL 911
               ++G ID +    Q   I +YK++     +  +             +  Q  +Y   L
Sbjct: 1113 ARYLTGSIDLVYFDGQRYHIADYKSNFLGADQQSYNHDAIELNMSHASYWLQAGLYLVAL 1172

Query: 912  KD 913
              
Sbjct: 1173 HR 1174


>gi|158521072|ref|YP_001528942.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans Hxd3]
 gi|158509898|gb|ABW66865.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans Hxd3]
          Length = 1203

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 123/985 (12%), Positives = 280/985 (28%), Gaps = 134/985 (13%)

Query: 9    LNESYELIYKDLWPLP--YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
             +E+ +    +           +      +   E          + L +A        R 
Sbjct: 208  ADETVDTAALEAAFAASLEQVAAQWTADKAAVQEI-LLNSGGLRRNLYRADWLSGWFLRM 266

Query: 67   SLLSSFF--LTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIRDRFNTYKMF 120
               +     L  +F   K   T  I + +             +  + ++IR         
Sbjct: 267  DAYAGPREGLPSEFEQFKKFTTTGIAEGTKSGGTVAHHPFFDTCQQHMEIRQALTGAFDR 326

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +  +             +  K++  +  F+DL++N + +L   D    +  K       +
Sbjct: 327  RIAVEKSRFLGEARKALDAQKQRLNIRYFDDLLLNLDRVLV-SDARTGLIEKARHRYRAV 385

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            LIDE QDT  +Q+ +  SL +              LF +GD KQ+IY F GA+       
Sbjct: 386  LIDEFQDTDPLQYRIFSSLFQGASA----------LFFIGDPKQAIYGFRGADVF----- 430

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                               L  ++RS A ++T V+ +F          E +       S 
Sbjct: 431  -----AYLEAVPGVDVACTLAENWRSRAGLVTGVNTLFQAVAAPFVFDEINFAPAAPAS- 484

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                 G       +     +    +      +     + +   ++AR  A   + ++   
Sbjct: 485  -----GAQIPRLTIDGNEPAALELRLMESDDFSTKTQKAAWIQLVARDTAAQAARLVALG 539

Query: 361  T-IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                +    R + A+D+ +LVR+  +  L+      L     I   G+    L       
Sbjct: 540  REQKAWLGDRPLAAEDMAILVRRNTEAILVQEALSRLNVHSTILKAGD----LFGSHEAF 595

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            ++  L   +    D         + +             +R    ++             
Sbjct: 596  EMQVLLSAVAFAHDLSLVKGACATQMMG--------HDARRIAGLSLEADTTDPVVERFL 647

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
             ++ + +    +   ++     +    ++    G ++  + F       L E L+ T   
Sbjct: 648  SYRDLWRRHGFMKMFSRLLRREEVLPRLMAFPDGERRCTNLF------HLAELLHRTALE 701

Query: 540  EQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                   L   +      L+      +    ++ + V+I+T+H +KGLE PV F     +
Sbjct: 702  AHYGPERLVRWLMRQRTGLQGRNEEHQLRLESDDSAVKIITIHKSKGLEYPVTFCPYLWT 761

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                      +       D     +   +S     + +D  +   + T  E  RLLYV +
Sbjct: 762  GTPRTAGGDGVACHEPREDGSLSMVLDLRSGDAEGV-ADRRERWYRETLSENMRLLYVAL 820

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA +Q  +      ++           ++             ++         +     
Sbjct: 821  TRAKNQCYVSVVPEKADGSPLAA-----LLGTGEAGISADALERVAGQSGGSIHVTRVGP 875

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                       +   +  +  ++ P  + +  +         + S  +       +  ++
Sbjct: 876  ADLHAAPLSAEDGGAEAKLSCRRFPGTIAADWRVASFSAMRRSFSGTEADHVAADDGGVT 935

Query: 776  D---------------NQTFNRGLIIHKLLQVIFT--LPEHKRKNFITSYCTKNAKLWPA 818
                                  GL +H++ + +         R+  ++   ++    +  
Sbjct: 936  PDPELLSAPYTGIAQFPAGARAGLFMHEVFEYLDFTNADPVYREELVSRELSRY--NFDR 993

Query: 819  KEYKNLLLSITRLLENP----------------------MMTTAMSCDSYSEVSVSG--- 853
            +    +   + R+L  P                       +       S S  S++    
Sbjct: 994  QWRGPVCDMVDRVLSTPLPPVSGGEGVRLDSVPMDCRINELEFFFPLRSVSPESLAAAYR 1053

Query: 854  ----------------KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                             +       ++ G +D +  S    FI ++K++   P    +  
Sbjct: 1054 QAGAGPGNDRFSHALKALAFSPARGVMRGFVDLVFFSAGRYFIVDWKSNLLGPNPESYSQ 1113

Query: 898  YT---------HIAQLSIYEKILKD 913
                       ++ Q  +Y   L  
Sbjct: 1114 TRLREVMEKEFYLLQAHLYAVALNQ 1138


>gi|257068318|ref|YP_003154573.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
 gi|256559136|gb|ACU84983.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
          Length = 1094

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 124/1036 (11%), Positives = 290/1036 (27%), Gaps = 184/1036 (17%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
               L       +     L+M + + +     + ++    +  +E   + L++  L+   +
Sbjct: 133  ALDLVREHALAVGIDPELTMMSTSASWQLAHEIVEGWDDSLDLEASPATLTAALLSLTSS 192

Query: 80   PQKNIITQEINKKS-PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-YLNAHY 137
               +++T    +     +++ L     +    R                 LA   L   +
Sbjct: 193  LADHLVTPAQLEAHLRQIRDHLAGIPLQVEGRRRTTPKDVAKVLGALESRLALLPLLERF 252

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             E +  +  LDF D +     + ++   ++ +  ++      +L+DE QDTS+ Q +++ 
Sbjct: 253  AEIRAADSALDFADQVSLAARVAREVPAASALARRMH---RVVLLDEFQDTSVAQLQMLT 309

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
             L                  AVGD +Q+IY + GA    +               Q    
Sbjct: 310  DLFGPGHAA----------CAVGDPQQAIYGWRGASAASLAGFATAF----AAPEQPVLQ 355

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
              L  S+R+   +L   +++ S   +A+       T    +       G  ++       
Sbjct: 356  RTLSTSWRNDEAVLAAANRLASPLRSAE----TGVTIPELQPRPGAGEGACEIL------ 405

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                                + +     A  I   I                        
Sbjct: 406  --------------------EAADERAEALAIGRWILERRAEQE-------EDAPPASAA 438

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VLVR R+  P +            ++V       L     + D+ A+           + 
Sbjct: 439  VLVRARRQIPALVDGLE----RSGLAVAVVGLGGLLHRPEVADVRAVLECAHDPGRGDAL 494

Query: 438  VCMLKSPLFNFSEDDIFKICTQRH-------------------ETETVYEYIQKFANCGI 478
            + +L  P       D+  +   R                    E+ ++ + +        
Sbjct: 495  MRLLTGPRLRLGARDLAVLGRWRDRLGARLRRDGETPGGQDEAESVSLVDAVDDLPPEDW 554

Query: 479  -------------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
                          +   V + + E+  +     P                  S   +  
Sbjct: 555  TDPSGRGLSGTGRERLLQVQQILREMRRLLPLPLPDLVTAATRLLDVDLALLESEPDSRA 614

Query: 526  IDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIK-------RAHSANHNEVRIMTV 577
            +  L+ F +     ++ +    L   +  LE                 + +   V I+T+
Sbjct: 615  LADLEAFRDHAAAFDRTARRGGLGAYLDLLEISEDEEAGLAVTAAPEAAHDPAAVTIVTM 674

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM---------------------------P 610
            H+AKGLE  +V +            +++                                
Sbjct: 675  HSAKGLEWDLVAVAGLTEGTVPSYDLRRAKTDEAGRVRVPADGWLGTLANAAVPTALRGD 734

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
            +                  +++ +      + +  E  RL+YV +TRA  +L++   +  
Sbjct: 735  ADTLPELAWAEADTQVDAESLIQEFRFAQGEESLREDRRLMYVAVTRARRRLLLTSAAWR 794

Query: 671  SNEKKSNQRTWY----------------------DMVYDSFHNDERVKKIKLTNSINKDE 708
            +    +  R+ Y                       +  +        +  +   +  +  
Sbjct: 795  TGLSSARPRSRYLTEVTDLVPESFRTVQEVPETNPLESERPQAQWPPRPGEPEQARARAA 854

Query: 709  WIAYEWSTHHPENTPLEREETIKQL---MDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
             +  E +         E  E +++    +++Q  P  + SP +   ++      S     
Sbjct: 855  ALLAEVAGQDDAPADPELAELVRRAVVDLEQQAAPPMVHSPPRLSASQVVQQARSPQAAA 914

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                       +    RG   H  L+       +     +      + +  PA E +   
Sbjct: 915  LDLLRPLPRRPSAAAARGTAFHAWLE-----SRYDSATLLDLEDVLDLEDTPADEAET-- 967

Query: 826  LSITRLLENPMMTTAMSCDSYSEVS---VSGKINCPKKDIIISGRIDQISISQ------Q 876
                   ++  +  A +   ++E S   V   ++     I + G ID +          +
Sbjct: 968  -------DHRALREAFTASEWAERSPLVVEQPVHTRIGQIAVRGVIDAVFADPEGTDGSE 1020

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFI 934
             + + ++KT          +      QLS+Y     +    P   +     +V++     
Sbjct: 1021 GVIVVDWKTGRVP--RPAQLRER-ALQLSLYRLAWHERTGLPLARIRTAFHFVADGITHE 1077

Query: 935  I----PQNKLNKAFAE 946
            +     + ++ +  A 
Sbjct: 1078 VRRHPSRERIAQLLAG 1093


>gi|254876659|ref|ZP_05249369.1| ATP-dependent exoDNAse beta subunit [Francisella philomiragia subsp.
            philomiragia ATCC 25015]
 gi|254842680|gb|EET21094.1| ATP-dependent exoDNAse beta subunit [Francisella philomiragia subsp.
            philomiragia ATCC 25015]
          Length = 1194

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 131/912 (14%), Positives = 270/912 (29%), Gaps = 157/912 (17%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              ++RD     K   +T         +   + +AK++  VLDF+DLI      +KK    
Sbjct: 275  VKELRDLQEEIKKANATQFIKQACLQIRQDFSKAKEQKGVLDFDDLITKLCHSVKK---L 331

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT--------EDFFVGKNTHS------- 211
              +   +  +    LIDE QDT   Q++++ ++              G +  S       
Sbjct: 332  PDLVKTLQHQYPVALIDEFQDTDAEQYQILDTIYPQSNKLPHSPLERGADRRSVVSVTDS 391

Query: 212  -------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                       L  +GD KQ+IY F G +    L+ K              +   +  ++
Sbjct: 392  PSSQRGIDDLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCSSD--------NQWSMDTNW 443

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RST++++   +++F   +            I         V       +     D    P
Sbjct: 444  RSTSEMIKAYNRLFYKQDYQPEEEGQIGANIFSDGIGYQLVKASPKANEKAKDFDDNLKP 503

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                +    +   +    S L+   A  I  ++ +  +            DI +LV   K
Sbjct: 504  INYFYYQVAEDDNKSDIDSNLSAWTANEIVRLLNSKKVVE---------SDIAILVENGK 554

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
               +I    +  K     SV  + R  +       +++AL   I   E+       L + 
Sbjct: 555  QAKVIQKALQAKKLS---SVYLSQRDNVYHSQEATEILALMEGINDLENKSMLKRALSTS 611

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            L          I        + ++   + A                L           F 
Sbjct: 612  L--LGGRADKFISYIDENDVSAWDEEIEKA--------------KSLRQQWHKYGFMAFI 655

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKR 563
              ++     ++          I  L E +       ++    ++    +L        + 
Sbjct: 656  MQVIHQNFTQRSDSKERVITNILHLAELIKVAENKYKHPNQLIKWYRQQLNSTATSEGEL 715

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               ++ N ++I+T+H +KGLE  VVF+                      N    +     
Sbjct: 716  RLESDDNLIKIITIHGSKGLEYSVVFIPFASYVSKKKFEASDFSKYYDKNIKQTVYKIGK 775

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                       +   ++    EE  RL YV +TRA  +  I        +   + R+   
Sbjct: 776  D--------DSVKPQIENEVIEELMRLFYVAVTRAEHRCYIGVAKYQDKKSDISFRSPLA 827

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH---------------------PENT 722
               D   +D+ ++KI+   +   ++    + +T H                       N 
Sbjct: 828  RFLDYQKDDDWLEKIQNITANPTNQSSLIDVATSHCYESENLITNDQFDHDTLQNLKAND 887

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
              +      +++   KI K        +       + S   ++ +  LE   + ++  + 
Sbjct: 888  INKLANDSWEMLSFSKISKSKVQNTALEKENDESEDDSAQKSQQE--LEFRFTASKGADI 945

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------ 836
            G I+H +L+           N +     +  K+  A+++  L + +   L  P+      
Sbjct: 946  GNILHNVLEHTDFSLGKIDDNLLQEQMDRY-KVVAAEDFDKLKVWLEECLVAPILFSIDT 1004

Query: 837  ---------------------MTTAMSCDSYSEVSVSGKI---------------NCPKK 860
                                 +    +  +  E      I                   +
Sbjct: 1005 KIGVIPSGLTTGSIGDNKSFCLKDIPNTKTLKEAEFYFPISNEKLYKKNIIEILAEYRNQ 1064

Query: 861  DI------------IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT--------- 899
            +I            ++ G ID I       ++ +YK+++   +  ++             
Sbjct: 1065 NIYYDDFASQKIFGMLHGFIDLIFEYDGKFYVADYKSNYLGDKLEDYNQAAMSEKNQSSF 1124

Query: 900  HIAQLSIYEKIL 911
            +  Q  IY   L
Sbjct: 1125 YDLQYLIYSVAL 1136


>gi|260577890|ref|ZP_05845821.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734]
 gi|258603984|gb|EEW17230.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734]
          Length = 1205

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 134/1121 (11%), Positives = 296/1121 (26%), Gaps = 225/1121 (20%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +          +       I    +  + T     +     +  +  +   +   S + +
Sbjct: 120  AVATYDSYAGDIVREYGLLIPSEPAARLITDAERWMVARDVVINSGDSLTTQTAVSSVIA 179

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-A 130
                       +++     ++     +KL +   +  + +  F              +  
Sbjct: 180  DVCALSDEMDNHLVGIAAVEQESAAAKKLLEELPKGPRSKKEFTDENTKFRDTQQYRIEL 239

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              L   + E  ++  +L F   +     L++  +V   +     +    +++DE QDT  
Sbjct: 240  LKLVQKFRETLQECDLLTFGQQMSKAATLVRDHEV---VGQDQRRRFRVVMLDEYQDTGH 296

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             Q  ++RSL  D   G+ + S+     AVGD  QSIY F GA    + + +      A  
Sbjct: 297  AQRVMLRSLFGDGRAGEGSFSA----MAVGDPMQSIYQFRGATASNLEKFRTDFPNAA-- 350

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ-GLSEDSTTTIRHRSSRIGQVGTVQ 309
             G+    ++L  S+R+   +L + ++V +         +    + +R R         V 
Sbjct: 351  -GEPAEKLQLLTSWRNPTMVLDMANRVSTWSMERSTESTGRLVSELRPRPGATEGESAVA 409

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
             +++   + D   +  Q  W  +   L      +                          
Sbjct: 410  FFDEREQELDWLADKLQSQWRDHQRKLETADDPA-------------------------- 443

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             ++     VLV   KD   I            +         L     + D+ A+ R ++
Sbjct: 444  KVKPFSAAVLVTVNKDAVPIYEKLVE----RGVPADMTAGPGLLYIPEVADVFAMLRVLV 499

Query: 430  SQEDDLSFVC-------------------------------------------------M 440
               DD++ +                                                  +
Sbjct: 500  DPTDDVALLRLLTGPRWNIGAADLAVLTRRAEQIAKRGAGEAGAVDDAAMERQRQENIEL 559

Query: 441  LKSPLFN--FSEDDIFKICTQRHETETVYEYIQKFANCGIS--------KFQHVIKYIHE 490
            L++P       E+ +  I      +  + + +    +            +   + + +  
Sbjct: 560  LRTPGVRDELIEEVLEAIPNATEFSVGLIDALADLTDAEQMGMSAEGSRRLAQLGRELGY 619

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRNEQNSYS 545
            L   +   +  D    I      R + ++R+            LD+F        +   +
Sbjct: 620  LRRHSLGKNLPDLVADIEKMLGVRTEVLTRWHRRPEQAIGTSHLDKFAQIVRDVSRTGSA 679

Query: 546  SLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            + + L+  L                   N V+I+TVH AKGLE  +V +     + +   
Sbjct: 680  TPKALVEYLLAAQSEEDGLDPGEVQRKDNTVQILTVHKAKGLEWDIVAVPHASRERYGDY 739

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST------------------ 643
               +     ++            +         L+    +                    
Sbjct: 740  SQPRSESAWTIKARVLPSSLRGDAGDDPGAYPTLVTDDAEDRSGHTKAYKEFNKQVSRFR 799

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             +E +RL YV +TR+   L +   +   +  K N  +    +   +     V       S
Sbjct: 800  AKENDRLFYVAITRSERVLFVSGSAFKESASKGNDPSICLTLLHEYLEQSGVAANVEHWS 859

Query: 704  INKDEWIAYEWSTHHP----------------------ENTPLEREETIKQLMDEQKIPK 741
                 +   +    +P                      E    ER+              
Sbjct: 860  GMGMYYKDLDTRLDNPDLPLEDKLMLPTPQINGERGDYEEERKERDTVATAGASWPSPAP 919

Query: 742  KLFSP-----IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI----IHKLLQV 792
             +  P      +    E   ++                +D              + LL+ 
Sbjct: 920  AMTRPGVAEGAEQVRKEIEAVSQQEEQDGQSRPAPGATADGAPTTLAEAWDLETNLLLEE 979

Query: 793  IFTLPEHK-----------------------------------------RKNFITSYCTK 811
               +   +                                         R     ++  +
Sbjct: 980  FSAMDNAELVVPLNVRMTATEAVSLRKDNQEFALRARRPIPLEPKPYAKRGTAFHNWVEE 1039

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS------VSGKINCPKKDIIIS 865
              K     +   L  +    LE+P + T       SE +      V G  +      +  
Sbjct: 1040 RYKQVSLLDEDQLPGASDATLEDPYLETLKDAFLRSEWADRQPESVEGAYSVTIGGHVFE 1099

Query: 866  GRIDQISISQQ----NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY------ 915
            GRID +            + ++KT                 QL++Y              
Sbjct: 1100 GRIDAVFHDGTDPTAGWIVVDWKTGRKPTGADMDAA---AMQLAVYRLAWAKLLSAKLGV 1156

Query: 916  --PNKSLVCLLIYVSEPKVFI----IPQNKLNKAFAEISTK 950
              P +++     YV+  + +     +  ++L      ++ K
Sbjct: 1157 EVPAENVRAAFHYVAANETYEPRTLLSADELEGMLGGVTKK 1197


>gi|194333976|ref|YP_002015836.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
 gi|194311794|gb|ACF46189.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
          Length = 1064

 Score =  239 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 143/913 (15%), Positives = 281/913 (30%), Gaps = 122/913 (13%)

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
                 +        +  + +   E   +        + +               +     
Sbjct: 225  ELERFARCLQAGTCSWAEWLKIAEARPQKSLHDNVARVAGLSASVAAHPRLHQDIRAYLK 284

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
               ++A      Y++ K ++ ++DF D      D L   D    ++  + ++++ +L+DE
Sbjct: 285  LVFSVAGMTLGVYQQLKHESGMIDFADQEAGLLDALDHPD----VQEALQEKLDLLLVDE 340

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDTS +Q  +   L++            R  + VGD KQ+IY F G + + +     I 
Sbjct: 341  FQDTSPLQLALFVKLSQL----------ARRTYWVGDIKQAIYGFRGGDARLMKAVLDIV 390

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
             +             L  S+RS   ++  V+ +FS           +T  I     R   
Sbjct: 391  PQE--------CREVLGDSWRSVPSLVEAVNDLFS---ETFSEQAGTTIDISLSPQREEH 439

Query: 305  VGTVQ--LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
               +    W+    + + Q +                             I  ++     
Sbjct: 440  PSQISSFRWDLGRGKLEEQYDALSAG------------------------IGRLLDERYQ 475

Query: 363  FSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              +      R +   DI VL R       I  +     N   I         L       
Sbjct: 476  VFDKGCNVWRDVSFADIAVLARTNAHVRDIARVL----NRNSIPSATVQP-GLLATPEAV 530

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
             +MA  R +L   D ++   +  S + +   ++  +   +   +        +  +    
Sbjct: 531  LVMAALRRVLDPSDTVATAEI-YSLVTSCDPEEWLQHRLRYIRSGHDKSLWMETGDDAHP 589

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVI---DVLDEFLN 534
              Q V      L   A   SP +    +  A    +   +  R  +E       LD  L 
Sbjct: 590  ALQAVAG----LRAHAALFSPSEALQAVTAAVGAAEHVQAWCRNSDEARIRLMNLDTLLE 645

Query: 535  FTLRNEQNSYSSLQE-----LISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            F  R E+ S +S Q      L++ L +     +        N VR+ T H +KGLE PVV
Sbjct: 646  FARRYEEESAASWQAVSISGLLNWLADLARDELDLFAEPPVNAVRVTTYHKSKGLEWPVV 705

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN------------IVSDLI 636
             L+D  S   +      +     L+    +     +                  + SD++
Sbjct: 706  ILLDLDSTSDALISHPMVVSSRKLDARDPLRDRRIRFWPSPFGSAKGFAGIDAVLQSDVL 765

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            +  +    EE  RL YV  TRA D L+           K+   +W          D    
Sbjct: 766  QEAQTLAGEEAARLFYVAATRARDCLVFAVP------SKARSFSWLASAGAECLIDVHDD 819

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             I+L    +       + +   P   P  REE +            +  P  +++     
Sbjct: 820  AIRLPGGRSLACRRWDDLAATVPAVRPGVREEPLS----------WISQPTASEVFYAEN 869

Query: 757  LNPSTIDTKG--KTNLESLLSDNQTFNR---------GLIIHKLLQ-VIFTLPEHKRKNF 804
            ++PS I         +E ++ D+ + +          G  +H++L   +         + 
Sbjct: 870  ISPSRITANDGVMAVVEEVVYDSDSCHIKGSVDMSVLGTAVHEVLAFALVQDDGVCTPHH 929

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-SEVSVSGKINCPKKDII 863
            I     +   L    + + L   + R      +       +   E+ V           +
Sbjct: 930  IRDILARYG-LSGRMDSEALYRRLRRF--RAWLAMRWPEGTLHVEMPVQH---VQPDRRV 983

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
            + G+ID +    +   I ++K+       +      +  QL  Y   L+           
Sbjct: 984  LKGQIDLLVAVNERWVIIDHKSMDRDIDLLRSKALDYTGQLQAYSHALEAVTSQCVEESW 1043

Query: 924  LIYVSEPKVFIIP 936
            + +V+  ++  + 
Sbjct: 1044 VHFVAAGRMVRLS 1056


>gi|311743792|ref|ZP_07717598.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
 gi|311312922|gb|EFQ82833.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
          Length = 1047

 Score =  239 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 140/1041 (13%), Positives = 284/1041 (27%), Gaps = 194/1041 (18%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G +   +    +     L       +     L + T         + L++          
Sbjct: 101  GDAGEPTISTYHAFAGRLIAEHGLRLGLEPDLRVLTDARRHQLVVRVLRRVDHPLQHVST 160

Query: 66   -FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
                +    L       ++++T E  +              E          ++   +T 
Sbjct: 161  HLPSVVGDVLALDGQLSEHLVTTEQLRLHDH------AVVAEMAAADKPLKLHRDVAATA 214

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            A       L   Y  AK +  V+DF D +    +L +  +VS      +    + +L+DE
Sbjct: 215  AKRIELSGLVDRYRAAKAEAGVMDFSDQMAWGTELARLPEVSDD----LGGRYDVVLLDE 270

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDTS+ Q +++ +L +              + AVGD  Q IY + GA    +       
Sbjct: 271  YQDTSVAQRDLLAALFQG------------RITAVGDPAQGIYGWRGAATGNLEGFIEQF 318

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                    ++     L +S R    I+ +          A+     S      R++    
Sbjct: 319  T---PAGVERVRPFSLAVSRRCGHRIIDIA------GHAARDFYASSDVVQPLRAAPDNP 369

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             G V +                                  L R +A  I+  +      +
Sbjct: 370  EGEVTV---------------------------------ALHRTVADEIAA-VADAVREA 395

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
              +    Q  +I VLVR   +   I    R      ++ V       L     + D++A+
Sbjct: 396  GRRHDPPQWNEIGVLVRNGAENAEIVQALRA----REVPVEIVGLTGLLAQPEVLDVLAV 451

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--------------------- 463
               +     + S + +L  P +   + D+  +  +                         
Sbjct: 452  LEVLDDMTANPSMLRLLAGPRWRIGDRDLALLGRRARRLSESARTREDPDAGDVDAVLAH 511

Query: 464  --------------ETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                           ++ E +       ++     +   + +++  L   A      D  
Sbjct: 512  ELERATAGVDPTEVVSLAEAVADPGPAPYSPEARQRLGEIAQFLARLRRHAHE-PLVDLV 570

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQY---PPT 560
              ++   +   +          D L +  +   R   +   +SL  L++ L+        
Sbjct: 571  HRVVRDLQLDVEL--DVEGVGTDNLTQLHDAVARYAGDDPHASLGGLMAYLQAERDYADG 628

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI-----MPSLNDD 615
            +  +  +  N V+++TVH +KGLE   VF+      VF     +         +P     
Sbjct: 629  LDVSTPSEANSVKVLTVHKSKGLEYDEVFVPFLADGVFPSGRSRDRWTGVARALPVSLRG 688

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
             G  +      +    V+   +   + +  E  RL YV  TRA  +L +  H     +K+
Sbjct: 689  DGDSLADLTEFT-TAGVARYKQESAQESMMEEVRLAYVAFTRARHRLHLSGHRWGRTQKR 747

Query: 676  SN------QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                           V      +    +          E + + W        P      
Sbjct: 748  PRGVSRFLADAHEWSVASGCEPEVWSPEPADDEPNPLGETVRHAWPHPVDGMQPRRELAA 807

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF--------- 780
              +       P     P+  D+     L  +  +      +E  L    +          
Sbjct: 808  EVRRRMAADGPPPDVHPVHADLATELDLLLAEAERVADPVVEVTLPSALSATQAMAWAAD 867

Query: 781  --------------------NRGLIIHKLLQ--VIFTLPEHKRKNFITSYCTKNAKLWPA 818
                                  G   H  ++   +                 +   L   
Sbjct: 868  ADAFARDLARPRPRRPSRAARFGTSFHAWIESTYLP---------------NQQGLLLDP 912

Query: 819  KEYK-NLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS 874
             +        I+   +   M  A     Y+    VS+            + GRID +  +
Sbjct: 913  SDLPGRGDTDISDDADLAAMKAAFEAGPYAGREPVSIEEGFTLHLGAQRLIGRIDAVFTT 972

Query: 875  -----QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYV 927
                      + ++KT+     +          QL++Y     + +  P   +V   +YV
Sbjct: 973  TLPDGTDGYEVVDWKTNRAATADP--------LQLAVYRLAWAEKHDVPVDRVVGTFVYV 1024

Query: 928  SEPKVFIIPQNKLNKAFAEIS 948
               +V              + 
Sbjct: 1025 RLDQVVRHDDLPGRPELERLL 1045


>gi|237751187|ref|ZP_04581667.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
 gi|229372553|gb|EEO22944.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
          Length = 711

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 109/611 (17%), Positives = 202/611 (33%), Gaps = 111/611 (18%)

Query: 82  KNIITQEINKKSPDLKEKL--KKSQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYE 138
           K  I + I K S ++ ++L            ++      + K + + +      +   YE
Sbjct: 119 KRKIIRNIKKNSKNIAKELTPATLSSAISDYKNNAILPDIAKQSPSMIDAQVAMIYQKYE 178

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           +    N ++DF+DL++    +L + +    +R +I  +  +I++DE QDT+ +Q  +++ 
Sbjct: 179 DYLYANNLVDFDDLLLLPYRILYENET---LRTQISNKYQYIMVDEYQDTNNLQASLLKL 235

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L            +   L  VGD+ QSIYS+ GA  + +L      +           I+
Sbjct: 236 LCA----------THENLCVVGDDDQSIYSWRGANIENILDFDAQFEN--------TKIV 277

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RST +ILT+ + + S           +T                          
Sbjct: 278 KLEQNYRSTEEILTIANNLISHNTTRYDKILKATRH------------------------ 313

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
               N ++  +    D   +        ++I  +I  +I                 DI +
Sbjct: 314 ----NGKKVQYIKSHDDKAEM-------KQIIESIQTLIAQGE----------SYNDIAI 352

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R       +        N  KIS          D   IKD++A  R  L+ +D+ S  
Sbjct: 353 LFRLNTFARHVEE----CFNRTKISFKMVGVIRFYDRQEIKDVLAYLRLALNLDDNFSLE 408

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK---FANCGISKFQHVIKYIHELIHIA 495
            ++  P  +  E     I        ++Y   ++    +    +K       I  L    
Sbjct: 409 RIINQPKRSIGEKTFGDIVAASMHYTSIYAAWKQGGLSSLKCHAKLSEFFTLIESLRECL 468

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLDEFLNFTLRNEQNSYSSLQELI 551
              +P +         K     I    +E  +     +DE     L   +          
Sbjct: 469 -QLNPSEIPHFFKTKIKLYADDIPTKDSESNEDRRKNMDELFATLLDFIECERGGDYASN 527

Query: 552 SELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            E+ Q           +   + N V  M+VH +KGLE   VF++     +F   +  +M 
Sbjct: 528 EEIIQAFLNDIALSSSSDIEDSNHVLCMSVHNSKGLEFKHVFVIGMEQGLFPLMNFYEMS 587

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           I     +                              +E  RL YV  TRA D L +   
Sbjct: 588 IDSVDKN--------------------------TQNLDEERRLAYVAFTRAKDTLTLSYA 621

Query: 668 SNTSNEKKSNQ 678
               +  +  +
Sbjct: 622 KKRMHHGRYRE 632


>gi|288942739|ref|YP_003444979.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
 gi|288898111|gb|ADC63947.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
          Length = 732

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/773 (16%), Positives = 243/773 (31%), Gaps = 144/773 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L   QV   +             +  +   +            
Sbjct: 30  GAGSGKTRVLVHRIAWLLQVQQVQPWSILAVTFTNKAAREMRSRLDEMLGTPVGGMWVGT 89

Query: 66  FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQ---DEFIKIRDRFNTYKM 119
           F  L+  FL    Q     +     + + +   +K  LK+ Q     +   + +    + 
Sbjct: 90  FHGLAHRFLRAHWQDAGLPQQFQILDSDDQLRLIKRLLKEMQIDEARWPPRQIQGFINRQ 149

Query: 120 FKSTLASLTLAK----------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
               L    L++           +   YE A+ +   LDF DL++ T +LL++    A I
Sbjct: 150 KDEGLRPHHLSETGDFVQDRMIAVYREYEAARLRAGSLDFADLLLCTLELLRE---RADI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
            +   Q   HIL+DE QDT+ IQ+  +R L                LFAVGD+ QSIY +
Sbjct: 207 LHHYQQRFAHILVDEFQDTNAIQYAWLRLLAG----------GDNHLFAVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +   +R               I L  ++RST                   +  
Sbjct: 257 RGAKVENIQSFQRDYPT--------TRTIRLEQNYRST-----------------GNILA 291

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            +   I H  +R+G+     LW             +     + F+ + +       AR +
Sbjct: 292 AANALIAHNPARLGKN----LW-------TQDSAGEPIRRYTAFNEVDE-------ARFV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I   +              +  +  +L R    + L             I       
Sbjct: 334 VERIRRFVQDGH----------RRDECAILYRTTAQSRLFEEAL----IQAGIPYRVYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYE 468
               +   I+D +A  R I +  DD SF  ++  P     E  +  +    R    +++ 
Sbjct: 380 LRFFERAEIRDALAYLRLIANPNDDASFERVVNLPTRGIGERTVELVREQARAAGVSLWR 439

Query: 469 YIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-- 520
             ++       +    +  +  +  I       +  +  +    ++ A    + F +   
Sbjct: 440 AARELSTSGALSPRASNALRGFLDLIESQRAAREGRALSEIADRVIEATGLIEHFKNSKD 499

Query: 521 -FGNEVIDVLDEFLNFTLRNEQ----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
             G + I+ L++ +    R EQ         L   ++         +       + V++M
Sbjct: 500 GKGQDRIENLEQLIETVSRFEQDLPDEDGDPLGAFLAHAALEAGEAEADPFE--DSVQLM 557

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE P+VFL      +F H                                   
Sbjct: 558 TLHSAKGLEFPLVFLAGLEEGLFPHS---------------------------------- 583

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +     +  EE  RL YVG+TRA  QL + +  +     +         +          
Sbjct: 584 LSADDPARLEEERRLCYVGLTRAMRQLYLTQAESRQLYGRKECPGPSRFLR--------E 635

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
              +L   +         ++   P +  +           +     +L   ++
Sbjct: 636 IPPELIEEVRGGGITRPAFAARVPASRSVASSPAKSGAGAQAPEGYRLGQRVR 688


>gi|311898255|dbj|BAJ30663.1| putative UvrD/REP helicase family protein [Kitasatospora setae
           KM-6054]
          Length = 1090

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 135/982 (13%), Positives = 289/982 (29%), Gaps = 138/982 (14%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   +        +  + +    +        + A+ L+  S  +       
Sbjct: 75  AAMELRDRMTARIGATAPQA-TTFHSFCYALLRAHQA-PEEYAEPLRLLSGPEQDVMVRE 132

Query: 68  LLSSFFLTQK---------FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+      K            +  + T+    +   +      ++   + + +R     
Sbjct: 133 LLAGGAEDAKAGVGTIGWPLDLRACLTTRGFADEVRAVL-----ARSRELGLGERELERF 187

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                      A +  A Y +      VLD+ +L+     L ++ DVSA    ++ +  +
Sbjct: 188 AAGVDRPDWAAAAHFLAEYLDVLDLRGVLDYAELVHRAVLLAERPDVSA----RLRERYD 243

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + +DE QDT   Q  ++R L  D           R L AVGD  QSIY+F GA+   +L
Sbjct: 244 VVFVDEYQDTDPAQVRLLRRLAGD----------GRDLVAVGDPDQSIYAFRGADVNGIL 293

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                 +      G+   +  L +S RS A +L    ++       +  ++         
Sbjct: 294 EFPDAFR---HADGRPAEVKVLRVSRRSGAVLLAATRELARRMPMGRLPADKLAAHRALL 350

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            SR G  G V+++       +              D +P    A             ++ 
Sbjct: 351 PSREG--GAVEVYTYPTPGAELDSVADLLRRAHLEDGVPWGEMAV------------LVR 396

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +      +R + A  + + +               L    ++   G     LT  LA 
Sbjct: 397 AGSRTIPAVRRALAAAGVPLEIDGDDLPLREESAVVPLLLALRVCAEGPGA--LTADLAH 454

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             L      +   +       + +      + D    +     E         +      
Sbjct: 455 TLLTGPLAALDGSDLRRLGRTLREEERRALAADGAPGVVRPAEELIREALDHPELLALLD 514

Query: 479 SKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFIS----------RFGN 523
           + +      +  L+   +       S  D    +    +  ++ +           R  +
Sbjct: 515 TPYARRAHELGTLLRKVRELLAGGASAEDALWELWDGSRRWRERLERAALRGGPAGRNAD 574

Query: 524 EVIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHT 579
             +D L        R E+    +    +L++E+E            +   + VR+MT H 
Sbjct: 575 RDLDALCALFETAARAEERVTGHRGALDLLAEVEAQDIAADTLHVRAVRPDAVRLMTAHR 634

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE  +V +      ++     +   +        G+   +                 
Sbjct: 635 SKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTP--------------- 679

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +   E  RL YV  TRA D+L++      + +     R   ++  ++          +
Sbjct: 680 -AALLAEERRLFYVAATRAKDRLVVTAVKAPAEDGDEPSRFLRELYRETLDPRTGRVLER 738

Query: 700 LT-------------NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                                        T  P+ +P  R    ++L        +   P
Sbjct: 739 TPRVKVADVTARPRRPLSVPALVAELRAVTVDPDRSPQLRRAAAERLATLAAATDEDGRP 798

Query: 747 ---------------------IKNDINEPYILNPSTIDTKGKTNLESLLSDN-------- 777
                                   + ++P  L+ S ++      L+  L  +        
Sbjct: 799 LVPAAHPDQWWGLDDPTAAPHPLREPDQPVRLSGSGLEQLETCTLQWFLEKDVKAGTTAS 858

Query: 778 QTFNRGLIIHKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITR 830
                G ++H L  +V            +            +A     +E      ++ R
Sbjct: 859 AAQGFGNVVHALADEVGSGRTPADLAVLMERLDTVWDALAFDAPWKSTQEKGEARAALER 918

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHV 889
            L   ++         +E      ++     + I G +D++        ++ ++KT  HV
Sbjct: 919 FLRWHVLERE-RATVATEHGFDLTLDVGGVAVRIRGSMDRVEADAAGRAYVVDFKTGKHV 977

Query: 890 PQEIEHIPYTHIAQLSIYEKIL 911
           P +   +P     QL++Y+  +
Sbjct: 978 PTDKS-LPEH--RQLAVYQLAV 996


>gi|307730045|ref|YP_003907269.1| exodeoxyribonuclease V subunit beta [Burkholderia sp. CCGE1003]
 gi|307584580|gb|ADN57978.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1003]
          Length = 1232

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 124/998 (12%), Positives = 281/998 (28%), Gaps = 138/998 (13%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK---KAQTLQQASQTQCI 62
            G       +  +     L + +   I   ++ + +  + T  K    +  +   ++    
Sbjct: 222  GAQAGADPQASFDAACELWHAERDAIVSLLADAQDRLSKTSHKPDHVSAAIAAWTEYFGQ 281

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
             +  +      L    +  K     + +       E   ++    +   +     +  + 
Sbjct: 282  GDCHAPPPRAALKLTASALKKATRVKFDPPEHAFFEH-AEALAAAVVAAEAAQRARWLEL 340

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                L  A    A     K+   V+ F+DL+ N    L       W+   +       LI
Sbjct: 341  VQIWLDYAP---AELVARKRTRRVVSFDDLLSNLYRALAAHP---WLAEALRARYPAALI 394

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT  +Q+ +   +                LF VGD KQ+IYSF  A+    L  + 
Sbjct: 395  DEFQDTDPLQFAIFSRIFA----------PAGPLFLVGDPKQAIYSFRAADLHTYLAARE 444

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                         +   L ++ RSTA I+   +++F     A  L       +R    R 
Sbjct: 445  ----------SASARYTLAVNQRSTAPIVEACNRIFEANPRAFVLDGLDYQPVRAGERRR 494

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                              + + +         +L +  +    +   A  I  ++     
Sbjct: 495  ---------PPFSDPQAGEGDFRIWLLPPGERALTKREAQREASEACAAEIVRLLRGARE 545

Query: 363  FSNG-KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             +       +   +I VLV+  K   LI  +       + +  V   +  +      + +
Sbjct: 546  GTVAIGDAPLAPGNIAVLVQTHKQGSLIKRVLAA----WGVGSVELAQASVFATPDAEQI 601

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
              +   + +  D       L +         ++++                      +  
Sbjct: 602  ERVLAAVDTPGDLRRLRAALATDWLGLDAAALWRLEQVADAPA------VANDPAHAADA 655

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTL 537
               ++       +         +  ++   +  Q+ ++    E      + L E +    
Sbjct: 656  MGWVERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAAPDGERRLTNVNHLAELVQARA 715

Query: 538  RNEQNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              +     +L+ L ++  Q      +    ++ N V+I+TVH +KGLE  VVF       
Sbjct: 716  ATQPGIAPTLRWLAAQRAQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDG 775

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                     +      +DD G  +        +       +H  +    E  RL+YV +T
Sbjct: 776  GLREPPSSGLPDAREYHDDGGGAVLHYGC--DDEEAERAARHAAREQAAERARLVYVALT 833

Query: 657  RASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            RA  +  +    + ++ + K+S +     +V  S H+ +         +     W A   
Sbjct: 834  RAVYRCYLVAGTYLSSRSTKESRRSVLNWLVAGSGHDFDGWLAEPPDEAALSARWQALAG 893

Query: 715  STHHPENTP---------------------------------------LEREETIKQLMD 735
                 +  P                                       +      ++   
Sbjct: 894  GPIALQPLPKVERRVPLESMLESGVDKRARASRRALRDQWRMASFSGLIAAGSKAEETQA 953

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
              +  +     + + +    +L P +         + +L   +    G  +H++ ++   
Sbjct: 954  PLEEVRPDHDELADALAATPLLMPPSAVQTPSLAADDILGFPRGAAAGECLHRMFELADF 1013

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSY 846
                   + I     +       +   +L   + +LL +           +         
Sbjct: 1014 SNPESWPDAIRGALRERPAPASPELAAHLPAMMHKLLADVVDTELVDGMRLRQLDPRRRL 1073

Query: 847  SEVSV----------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
            +E+                           +        + G ID I       +I ++K
Sbjct: 1074 NELEFLFAAPALDFAALRELLVGHGYPDVALEPGMLRGFVKGFIDMIVEHDGRFWIVDWK 1133

Query: 885  THHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            ++H      +            + +  Q  +Y   L  
Sbjct: 1134 SNHLGDTAQDYAAASLEAAMASHAYHLQALLYTVALHR 1171


>gi|150009169|ref|YP_001303912.1| ATP-dependent helicase [Parabacteroides distasonis ATCC 8503]
 gi|149937593|gb|ABR44290.1| ATP-dependent helicase [Parabacteroides distasonis ATCC 8503]
          Length = 1055

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 130/845 (15%), Positives = 260/845 (30%), Gaps = 121/845 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---R 163
                   +NT +       +L +   ++      +++  V+    LI +T +LL K    
Sbjct: 314  LFANLTAYNTAREIVRYYYTLGILTDISRQIASYREEKNVM----LIADTTELLNKVISG 369

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + +I  K    ++H +IDE QDTS +QW   R L E+         + R    VGD K
Sbjct: 370  SDAPFIYEKTGTHVDHYMIDEFQDTSGMQWNNFRPLVEESLA------NGRANLIVGDVK 423

Query: 224  QSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F  ++ K +    +R  +       ++     L  ++RS   I+   +  F+   
Sbjct: 424  QSIYRFRNSDWKLLDEQVRRDFE------DEQVREETLMDNWRSCRHIVEFNNAFFTAAP 477

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP---QQESWTSYFDSLPQE 339
                   +        S       + ++             P   +       F S  ++
Sbjct: 478  AILQDLYNEALKNSSLSEEERTAFSARIMAAYDDSSQRVPPPFQKKDGHVRIDFLSGDED 537

Query: 340  SSASILA-RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  R+  T+  +                 KDI +LVR  ++  L+       K 
Sbjct: 538  KDWKQEAMERLPATLERLQDNGYAL----------KDIAILVRTNQEGALVADTLLAYKE 587

Query: 399  -----DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                  Y   ++ +D   +    A++ L+A+ R++ + ED  +            +    
Sbjct: 588  EHPSDRYNYDIISDDALFVGSSPAVRFLIAVLRYLRNPEDRTN---------RKLAMYAY 638

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
              +  +  E+E      Q   +        V + +    + + +    +           
Sbjct: 639  QVLTGKFGESEADESVFQNLQSISRQSLYEVTEGL--FRNFSAYFPETEQV--------- 687

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                           +  FL+      Q   + L   +   ++       A     N +R
Sbjct: 688  --------------FVQAFLDMVSEYAQKESADLNRFLRWWDETGYRKTIATPDGQNAIR 733

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL---NDDPGIPIWIPQSKSRNN 630
            I+TVH +KGL   VV +     ++        +          D   +          + 
Sbjct: 734  ILTVHKSKGLGFKVVIIPFGDWEIDHKPTKPVILWCHPEKKPFDRLHLVPVRYGQILSST 793

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
            I +      +     +    LYV  TR+ ++LI+         K+        +    + 
Sbjct: 794  IFAKDYFKERLHAFIDNLNTLYVAFTRSKEELIVFSPRPRKINKEGKVEKITSIADLLWA 853

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              E   +             +   +    E  P                           
Sbjct: 854  GVETDIEDDTFERGEWWHPASGRTAEDTLEEIP--------------------------- 886

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
            ++  Y ++P           +    DN     G ++H++L  I           + SY  
Sbjct: 887  MSRLYSVSPDDRLQLRLHG-KGFFFDNARRKHGTLMHEVLSRI--RTPKDIPASVESY-- 941

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
            + A +   +E   L+  +  LL+   +       +   V     I   K    +S R D+
Sbjct: 942  RLAGVINREEAAELISRLEELLQAEEVKAWYDGSAR--VLNEVDILFGKG---LSKRPDR 996

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            + I    + + +YK         E     H  Q+  Y ++++     + +   L YV   
Sbjct: 997  VIIKGGKVIVVDYKFG-------ERQDKRHPNQVRNYLQLIRKMGFER-VDGYLWYVELG 1048

Query: 931  KVFII 935
            K+  +
Sbjct: 1049 KIEAV 1053


>gi|186476506|ref|YP_001857976.1| exodeoxyribonuclease V subunit beta [Burkholderia phymatum STM815]
 gi|184192965|gb|ACC70930.1| exodeoxyribonuclease V, beta subunit [Burkholderia phymatum STM815]
          Length = 1241

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 124/987 (12%), Positives = 266/987 (26%), Gaps = 140/987 (14%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
            ++W      +  + +     +   +         ++  +     ++         L    
Sbjct: 242  EMWRAGRDDIVRLLEAAQEGLSKLSHKPELVRAAIEAWTDYFAQDDCHVPPPKAALKLTA 301

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
                    +  +  +      +           +     +      A L  A        
Sbjct: 302  AALTKGTKKNFDPPTHPFF-VVADELAAASLAAEAAQRARWLGLVQAWLDYAP---HELT 357

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N +  L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 358  TRKRSRRVVSFDDLLSNLHRALATH---VWLADALRARYPAALIDEFQDTDPLQFAIFNR 414

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +           +  +  
Sbjct: 415  IFA----------PKGPLFLVGDPKQAIYSFRAADLHTYLAARA----------KASARY 454

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RSTA ++   ++ F     A  L       +R         G  Q    +    
Sbjct: 455  TLAVNQRSTAPVVEACNRFFEANPKAFVLEGLDYQPVR--------AGERQRPPLIDRDG 506

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDIL 377
             +  + +         +L +  +    +   A  I  ++            + +   +I 
Sbjct: 507  TAGGDFRAWMLPQGDAALIKRDAQRAASEACAAEIVRLLRGAREGHVTIGDKPLAPGNIA 566

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VLV+  K   LI  +       + +  V   +  + + L  + +  +   + +  D    
Sbjct: 567  VLVQTHKQGSLIKRVLSA----WGVGSVELAQASVFESLDAEQIERVLAAVDTPGDLRRL 622

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
               L    F      ++++      T    E  Q     G       ++       +   
Sbjct: 623  RAALACDWFGLDAASLWRLEHLAESTPAAGELTQTVDAMGW------VERFSRYRMLWHE 676

Query: 498  CSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                  +  ++      Q+ ++   G   +  L+                +   +  +  
Sbjct: 677  RGFAVMWRTLMRELHVAQRIVAGAEGERRLTNLNHLAELLQARAATR-PGIAPTLRWIAA 735

Query: 557  Y------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                       +    ++ N V+I+TVH +KGLE  VVF            H   +    
Sbjct: 736  QREGAGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGAMREPHPSGLPDAR 795

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HS 668
              +DD G  +                +   +    E  RL+YV +TRA  +  +    + 
Sbjct: 796  EYHDDGGTAVLHYGC--DEEQADLASRQATREQAAERARLIYVALTRAVYRCYVVAGTYL 853

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----- 723
            +  + K+S +     +V  +    +      L        W A           P     
Sbjct: 854  SARSTKESARSVLNWLVAGNAREFDEWLAKPLEEGAIYRHWQALAGGPVTVAGLPPVVRR 913

Query: 724  ----------LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                      +       +    +      FS +    +     + S    +        
Sbjct: 914  EPLESVTDSGVRLRARANRRSLREAWRMTSFSSLIAAGSRTDETSASNAVNEEARPDHDE 973

Query: 774  LSD---------------------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
            L+D                            +    G  +H++ ++          + I 
Sbjct: 974  LADLPSVSNAPVFDVAAAPVELAADDILSFPRGPAAGECLHRMFELADFSDPGTWPHAIE 1033

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSV------ 851
                +       +  + L   + RLL +           +         +E+        
Sbjct: 1034 RALHERPAPAEPELAQRLPAMMQRLLADIVSTELVPGMTLAALDPKRRLNELEFLFSAAS 1093

Query: 852  ----------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV------ 889
                               ++       + G ID I   Q   ++ ++K++H        
Sbjct: 1094 LDFPALRALLVGHGYPDVALDAGALRGFVKGFIDMIVEHQGRFWVIDWKSNHLGDTRESY 1153

Query: 890  ---PQEIEHIPYTHIAQLSIYEKILKD 913
               P E     + +  Q  +Y   L  
Sbjct: 1154 ASEPLEEAMASHAYHLQALLYTVALHR 1180


>gi|322384701|ref|ZP_08058369.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150400|gb|EFX43893.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 913

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 119/762 (15%), Positives = 247/762 (32%), Gaps = 115/762 (15%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMET-----GNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            + + P     V+  +K  +   E      G   +  K    +          R      
Sbjct: 93  VRQVDPRQILLVTFTSKAAAEMRERLADLPGISAVEAKLVGARTFHSLFLQVIRQEGCED 152

Query: 72  FFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             LT +  P    K ++     +++ + +  L          +    + + + +  +   
Sbjct: 153 DLLTDQRRPHFIMKRLLKIAGLQEAWEPETALS----RLSAWKSSMLSPEEWPARTSMEQ 208

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
             K +   YE  KK    +DF+D+++  + L  +      +  +I ++  +I++DE QDT
Sbjct: 209 QLKPVLLQYEGWKKAEGKMDFDDILLEAHKLFTRHPE---VLERIRRQYAYIMVDEFQDT 265

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q++++R + E              L AVGD+ Q+IY+F+GA    +L+ ++      
Sbjct: 266 NPLQYQLVRMIAE----------PDCNLMAVGDDDQTIYTFNGARQAYILQFEQQYPA-- 313

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +I L +++RS + IL + ++V S  E  +  +  +    +         GTV
Sbjct: 314 ------ARVITLDVNYRSGSSILGLANEVISHNEERRPKTLYTGIREK---------GTV 358

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           Q    + +                             A  I   I   +G          
Sbjct: 359 QYLSPLTTD--------------------------HEAEAILEHIKQQVGKGKR------ 386

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              +  DI +L R    +         L  +    V   +  +   H  I+ ++   R  
Sbjct: 387 ---KYGDIAILHRTASYSRAF---FERLLMEDIPFVQYGNSDLFYRHWLIRPVLNHLRLA 440

Query: 429 LSQEDDLSFVCMLKSPLF----NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
           L+  D  +   +L +         S     +    +                   K    
Sbjct: 441 LNSRDMKACEGVLLTLYIAKEKGASWIREKEKKKAKKWPLIHLMDHPDLKENQKEKLMER 500

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           +K I  L       +       I         +      +  + L E L+  L      +
Sbjct: 501 LKMIKSLQAFKPEEAIRQI--RIKFYDAFIDAYDPEPDTQYKETLKEMLDE-LETSARRF 557

Query: 545 SSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           + L+E +  +++                 + +++MT+H +KGLE PVV+L+    +V  H
Sbjct: 558 TGLEEFLGFVDRITDKYMVMESLKKEDESDALKLMTIHRSKGLEFPVVYLIGVSERVLPH 617

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               K         +                     +H   +  EE  RL YV +TRA +
Sbjct: 618 STSLKKEGCKDNRFEG--------------------EHGAAAALEEERRLAYVAVTRAKE 657

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L I        ++    R    ++        RV         +  +  +       PE
Sbjct: 658 ELYISSPGYYRGKQAHVSRF---ILQPFESRRSRVSNTAQPVPASAAKKPSAIQDRSMPE 714

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIK-NDINEPYILNPST 761
                 ++T++  +           P +    ++P +++P+ 
Sbjct: 715 MGNASDKKTVRTQVYTAGYGTNSSQPERKARHDQPKLVSPAA 756


>gi|225010263|ref|ZP_03700735.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
 gi|225005742|gb|EEG43692.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C]
          Length = 1043

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 131/780 (16%), Positives = 264/780 (33%), Gaps = 118/780 (15%)

Query: 162  KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
            K     +I  ++ ++ +H  IDE QDTS +QW+ ++ L E+  V ++      +L  VGD
Sbjct: 374  KNQSVPFIYERMGEQYSHFFIDEFQDTSSLQWDNLKPLLENAVVSEDEKGQRGSLLLVGD 433

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             KQSIY + G   +   +   + + +A  A Q   +I LP +FRS  +I+   ++ F+  
Sbjct: 434  AKQSIYRWRGGNAE---QFIDLYENKAFPAAQP-KVINLPNNFRSLFEIVQFNNRFFNYT 489

Query: 282  ENAQGLSEDS--TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                     +       H+  +    G V L                             
Sbjct: 490  AAYLERENFASLYRDGSHQKPQKESGGFVSLEFLDDDPDK-------------------- 529

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
               +    ++   I+  +                 DI +L RK+K   L+         +
Sbjct: 530  --EAHYCEKVLDAINASLDKG----------FSYGDICLLTRKKKHGVLLAQYL----IE 573

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +I V+ ++  +L +H  ++ L+ L RF+  +        +L       +++ I      
Sbjct: 574  KQIPVISSESLLLDNHPKVRFLVQLIRFVYQETTPYQAYPILA--YLAQTQNKISVHEYI 631

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
            +       E+ +                           S +DF         G + F  
Sbjct: 632  KKSLGNASEFFKSEFGFNPEAL--------------NTASIYDFC------LMGIRSFSL 671

Query: 520  RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
              G +    L  FL+               L+   EQ    +  +     N ++I+TVH 
Sbjct: 672  ANGKDA--YLQFFLDVVSEVSLKEGGGPSVLLQYWEQKKSQLSVSAPDGLNAIQILTVHK 729

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK---SRNNIVSDLI 636
            AKGLE PVV      + +   ++      +P  + D    + + ++      N +   +I
Sbjct: 730  AKGLEFPVVIFPFAETPLKEERNPTFWLPVPKEDFDGFEYLLLAKNDKIAQYNPLSKQII 789

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            +   +    +   +LYV +TRAS  L +      + + K N+  +  ++ D   +     
Sbjct: 790  EEEDQRLVLDALNILYVALTRASQALFVIGGMALNKDGKVNKNQYSGLLIDYLMDQGEWS 849

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
              K   +    +                      +     +  PK +F  +  + +E Y 
Sbjct: 850  AEKQRYTFGHFKMPE-------------------ETTAAHKNDPKTIFFQLTQNTHERYA 890

Query: 757  LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
            L           +        Q  N G  +H LL+ +   P       +     K +K +
Sbjct: 891  L-------LMHPHTFVPEKVLQAQNLGQQLHYLLEQLDIHP-------LEKSLEKTSKAY 936

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
            P+ +  +L      ++ +  +         +       I      +    R D++  ++ 
Sbjct: 937  PSADLGSLKTQAVGIISHEHLEKYYQKGLKA--FNEKDIFTQNGSVA---RPDRLVFNEN 991

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
             + + +YKT     ++          Q+  Y  +L++      +   +L+YV   +V  I
Sbjct: 992  KVTVIDYKTGVEKEED--------QVQIKSYGALLEEM--GYQVENKILVYVDGARVLPI 1041


>gi|241668124|ref|ZP_04755702.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella
            philomiragia subsp. philomiragia ATCC 25015]
          Length = 1191

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 131/912 (14%), Positives = 270/912 (29%), Gaps = 157/912 (17%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              ++RD     K   +T         +   + +AK++  VLDF+DLI      +KK    
Sbjct: 272  VKELRDLQEEIKKANATQFIKQACLQIRQDFSKAKEQKGVLDFDDLITKLCHSVKK---L 328

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT--------EDFFVGKNTHS------- 211
              +   +  +    LIDE QDT   Q++++ ++              G +  S       
Sbjct: 329  PDLVKTLQHQYPVALIDEFQDTDAEQYQILDTIYPQSNKLPHSPLERGADRRSVVSVTDS 388

Query: 212  -------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                       L  +GD KQ+IY F G +    L+ K              +   +  ++
Sbjct: 389  PSSQRGIDDLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCSSD--------NQWSMDTNW 440

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RST++++   +++F   +            I         V       +     D    P
Sbjct: 441  RSTSEMIKAYNRLFYKQDYQPEEEGQIGANIFSDGIGYQLVKASPKANEKAKDFDDNLKP 500

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                +    +   +    S L+   A  I  ++ +  +            DI +LV   K
Sbjct: 501  INYFYYQVAEDDNKSDIDSNLSAWTANEIVRLLNSKKVVE---------SDIAILVENGK 551

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
               +I    +  K     SV  + R  +       +++AL   I   E+       L + 
Sbjct: 552  QAKVIQKALQAKKLS---SVYLSQRDNVYHSQEATEILALMEGINDLENKSMLKRALSTS 608

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            L          I        + ++   + A                L           F 
Sbjct: 609  L--LGGRADKFISYIDENDVSAWDEEIEKA--------------KSLRQQWHKYGFMAFI 652

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKR 563
              ++     ++          I  L E +       ++    ++    +L        + 
Sbjct: 653  MQVIHQNFTQRSDSKERVITNILHLAELIKVAENKYKHPNQLIKWYRQQLNSTATSEGEL 712

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               ++ N ++I+T+H +KGLE  VVF+                      N    +     
Sbjct: 713  RLESDDNLIKIITIHGSKGLEYSVVFIPFASYVSKKKFEASDFSKYYDKNIKQTVYKIGK 772

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                       +   ++    EE  RL YV +TRA  +  I        +   + R+   
Sbjct: 773  D--------DSVKPQIENEVIEELMRLFYVAVTRAEHRCYIGVAKYQDKKSDISFRSPLA 824

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH---------------------PENT 722
               D   +D+ ++KI+   +   ++    + +T H                       N 
Sbjct: 825  RFLDYQKDDDWLEKIQNITANPTNQSSLIDVATSHCYESENLITNDQFDHDTLQNLKAND 884

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
              +      +++   KI K        +       + S   ++ +  LE   + ++  + 
Sbjct: 885  INKLANDSWEMLSFSKISKSKVQNTALEKENDESEDDSAQKSQQE--LEFRFTASKGADI 942

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------ 836
            G I+H +L+           N +     +  K+  A+++  L + +   L  P+      
Sbjct: 943  GNILHNVLEHTDFSLGKIDDNLLQEQMDRY-KVVAAEDFDKLKVWLEECLVAPILFSIDT 1001

Query: 837  ---------------------MTTAMSCDSYSEVSVSGKI---------------NCPKK 860
                                 +    +  +  E      I                   +
Sbjct: 1002 KIGVIPSGLTTGSIGDNKSFCLKDIPNTKTLKEAEFYFPISNEKLYKKNIIEILAEYRNQ 1061

Query: 861  DI------------IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT--------- 899
            +I            ++ G ID I       ++ +YK+++   +  ++             
Sbjct: 1062 NIYYDDFASQKIFGMLHGFIDLIFEYDGKFYVADYKSNYLGDKLEDYNQAAMSEKNQSSF 1121

Query: 900  HIAQLSIYEKIL 911
            +  Q  IY   L
Sbjct: 1122 YDLQYLIYSVAL 1133


>gi|29829619|ref|NP_824253.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606727|dbj|BAC70788.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
            MA-4680]
          Length = 1129

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/990 (12%), Positives = 271/990 (27%), Gaps = 127/990 (12%)

Query: 1    LKNRFGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ 54
            L++R  L +  +                  +  V    +   L + +G    +     L 
Sbjct: 97   LRDRMALRMGAARAPQATTFHSFCYALVRAHQDVGLFVE--PLRLLSGPEQDVAVRGLLA 154

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                    +     L    +      +  + T+    +   +  + ++       +R   
Sbjct: 155  G-------QPDLERLGLAHVRWPDELRACLTTRGFADEVRAVLARSRELGLSPGALR--- 204

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  +        A    A Y +      VLD+ +L+     L ++      +  ++ 
Sbjct: 205  --SFAARIGRPDWMAASAFLAEYLDVLDLQGVLDYAELVHRAVLLARRPG----VAERLA 258

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
               + + +DE QDT   Q  ++ +L            S RTL A GD  QSIY+F GA+ 
Sbjct: 259  AHYDAVYVDEYQDTDPAQARLLHALAG----------SGRTLVAFGDPDQSIYTFRGADV 308

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
              +L       +     G+   +  L  S RS A +L     +       +  +E     
Sbjct: 309  NGILDFPDAFPR---ADGRPAPVEVLRTSRRSGAGLLAATRLLTQRMPLNRLPAEKVRAH 365

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL-ARRIAYTI 353
                  R G    V  +    ++ D+  +  + +         + +      +R I    
Sbjct: 366  RELAPVRDGGHAEVYTYPTPGTELDNIADVLRRAHLEDGVPWGEMAVLVRAGSRTIPTVR 425

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK------------ 401
              +             +    +  V         +          D              
Sbjct: 426  RALTAAGVPLDIDGNDLPLRHEPAVTPLLTALKAVAEAEADASGTDASGTHAESSGPAGP 485

Query: 402  ----ISVVGNDRFILTDHLAIKDLMALGRFILSQ--EDDLSFVCMLKSPLFNFSEDDIFK 455
                      +        +  D       + S     D + +  L   L          
Sbjct: 486  AASPEPAGSAEPVEPARESSWLDTETALTLLASPLAGMDAADLRRLGRALREEERAAGNH 545

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            +     E         +        +    + +  L+  A+               +   
Sbjct: 546  VPPPSDELLARALAEPERLVAHDPAYARGAQRLGVLLRKARERLAGGRARRRRALWELWD 605

Query: 516  ------------QFISRFGNEVIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP- 558
                        +     G      LD     F       E+         + E++    
Sbjct: 606  GTPWPQRLARAARRGGAAGRNADRDLDAVCALFATAARAEERTGGRGALNFLEEIDAQDI 665

Query: 559  -PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                    +   + VR+MT H +KGLE  +V +      ++     +   +        G
Sbjct: 666  AADTLTRRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDG 725

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
            +   +                   +   E  RL YV  TRA ++LI+      +++    
Sbjct: 726  LAEPLTPG----------------ALLAEERRLFYVAATRARERLIVTAVKAPADDGDQP 769

Query: 678  QRTWYDM----------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
             R   ++                    V +++ T    +      E +           +
Sbjct: 770  SRFLTELGVEPKDVTGRPRRPLSVAALVAELRATTVDPRVSDTLREAAARRLARLAALGD 829

Query: 728  ETIKQLMDEQKIPKKL-------FSPIKNDINEPYILNPSTIDT-KGKTNLESLLSDN-- 777
            E  + L+      +               + ++P +L+ S +D      +L+  L     
Sbjct: 830  EDGRPLVPSAHPYRWWGMYEPTESKVPLRNRDQPVVLSGSALDQLANTCSLQWFLGREVK 889

Query: 778  ------QTFNRGLIIHKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNL 824
                       G ++H L  +V            +            +A    A+E +N 
Sbjct: 890  ADAPATAAQGFGNVVHVLADEVASGHTPADLDVLMERLDSVWNALAFDAPWKSAQEKENA 949

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEY 883
             +++ R L+  +M  A      SE      +     ++ I G +D++    +   ++ ++
Sbjct: 950  RVALERFLQWHVMDRAGRTPVASEHDFDVTLEAGSYEVRIRGSMDRVEADGEGRAYVVDF 1009

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            KT    P   E        QL++Y+  + +
Sbjct: 1010 KTGKQAPTAAEVGR---HPQLAVYQLAVSE 1036


>gi|257465356|ref|ZP_05629727.1| exodeoxyribonuclease V beta chain [Actinobacillus minor 202]
 gi|257451016|gb|EEV25059.1| exodeoxyribonuclease V beta chain [Actinobacillus minor 202]
          Length = 1204

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 146/987 (14%), Positives = 302/987 (30%), Gaps = 142/987 (14%)

Query: 14   ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA------SQTQCIEERFS 67
            +  + +L        +DI   +   +E    T  KKA + Q        +  + +++   
Sbjct: 230  QRFFTELKDYWREYRADIVTPIQNELEKKYKTGEKKALSRQSYKKNLVENWIKTVDQWVE 289

Query: 68   LLSSFFL--TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
              SS F   T +   Q+ +I +      P       K+Q      + +F           
Sbjct: 290  SDSSSFPANTFERFCQQMLIEKAEEGGEPLTSPHFAKNQAFLTAYQTQFEGKIKPVLLYH 349

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             L   +   A ++    +     F+DL+   N  LK  +    +  +I  +    +IDE 
Sbjct: 350  FLLSLREKIAEHQIHYAERG---FDDLLKMLNQALKG-ERGEQLAAQIRAQFPFAMIDEF 405

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT   Q+++ R +        +  +  +    +GD KQSIY F GA+    L       
Sbjct: 406  QDTDKTQYDIFRQIF------MSEKAENQGFIMIGDPKQSIYKFRGADIFTYLEAAN--- 456

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                   Q      L  ++RS   ++  V+++FS                +H+ +     
Sbjct: 457  -------QAQEKRTLSKNWRSFPKVVESVNQLFS--------------FPQHKEASPFLH 495

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS- 364
              +        +   Q    +           +E +A   A +I   +  M         
Sbjct: 496  KDIHFQPVRAKEFTFQLMGSEHVICYLQTEFDEEQAAEHCAAQIQLQLKAMQEKGFGVEE 555

Query: 365  --NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
              +  K + QAKDI VLVR R    L+      L      SV  +++  +       DL 
Sbjct: 556  LNDSSKNIFQAKDIAVLVRSRNQASLVKN---ALAQRGIKSVFLSEKSSVYQSEVAYDLA 612

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             + +  L      + +  L S L+  +  +++++       E+V+E            +Q
Sbjct: 613  VILKACLHPYHQKTLLSALGSHLWGLTAFELYQL----KHDESVWESYVANFVVYQQLWQ 668

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                    ++ +      ++     L +++  ++ I+         L E L    +  +N
Sbjct: 669  K-----QGVLAMLHQLFLNEGIIQRLKSRENAERLITDLF-----HLAELLQSGSQEVEN 718

Query: 543  SYSSLQELISELEQYPPTIKR--AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              + L+     LE             +  N V+I+T+H +KGL+ PVV+L   G   + +
Sbjct: 719  ETALLRWYERHLEDDEENDAYTLRLESEENLVKIVTIHGSKGLQYPVVWLPFVGKNSYEN 778

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            ++                     +    N     + +   ++   E  RLLYV +TRA  
Sbjct: 779  RNGGLATYHDEE---------DQKQWDFNEKDERIQRLRNQAEFAEDLRLLYVALTRAEY 829

Query: 661  Q--LIICKHSNTSNEKKSNQRTWYDMVYDSFHND-----------------ERVKKIKLT 701
            Q  LI+  H +          +  ++  D+                     E + +    
Sbjct: 830  QMNLILPAHFSKGWNAMHYLLSNGELALDNREEAAISTEDYIKAKNIPCKIEHLPEQPRF 889

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--------PIKNDINE 753
            +    +       S    E+   +RE  I          +             +  D+ +
Sbjct: 890  DDWRAEADQQEVLSVQPFEHRIPQREGQITSFTALYSYHEWKRQSKDHNEIGSLLTDLAQ 949

Query: 754  PYILNPSTI----DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
             Y  + S +    + +      +          G  +H+  +        ++   I    
Sbjct: 950  DYDQSVSGLTQNDELEQLDTALNAYHFPHGTKIGNTLHQFFEHYDFQQAVEKTEIIALCE 1009

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSG------------- 853
                     +        +           ++        +E                  
Sbjct: 1010 KLALDEVWVEPICQWFEKVRTTPFGEDLVSLSEIAQESRLNEWQFFLRLNNEDWVSELNH 1069

Query: 854  -------------KINCPKKDIIISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHI 896
                          +  P  +  + G ID I+  +   ++ +YK++           E++
Sbjct: 1070 LLKEYSELAKHLPPLKLPDLEGFVRGFIDCIAKVKGKFYVIDYKSNFLGYLPQDYSTENL 1129

Query: 897  PY-----THIAQLSIYEKILKDSYPNK 918
                    +  Q  +Y   +      +
Sbjct: 1130 AKTMGQYRYDLQYLLYTLAVHRYLKGR 1156


>gi|55981396|ref|YP_144693.1| UvrD protein [Thermus thermophilus HB8]
 gi|55772809|dbj|BAD71250.1| UvrD protein [Thermus thermophilus HB8]
          Length = 692

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 116/690 (16%), Positives = 206/690 (29%), Gaps = 138/690 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + L P             +L +       +          +         
Sbjct: 65  AAEEMRERL-RGLVPGAGEVWVSTFHAAALRILRVYGERVGLRPGFVVYDEDDQTALLKE 123

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           +L    L+ +  P K ++ +  N+    LK  L +  + +  +                 
Sbjct: 124 VLKELALSARPGPIKALLDRAKNRGV-GLKALLGELPEYYAGLSRGR------------- 169

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+EA K    LDF D+++    LL++ +    +   + +    I +DE QD
Sbjct: 170 --LGDVLVRYQEALKAQGALDFGDILLYALRLLEEDEE---VLRLVRKRARFIHVDEYQD 224

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS +Q+   R L  +             L AVGD  Q IYSF  A+ K +L   R     
Sbjct: 225 TSPVQYRFTRLLAGE----------EANLMAVGDPDQGIYSFRAADIKNILDFTRDYP-- 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  +  L  ++RST  IL   + V          +                   
Sbjct: 273 ------EARVYRLEENYRSTEAILRFANAVIVKNALRLEKALRPVKR------------- 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            +        D+  +       AR +A  I+ +           
Sbjct: 314 ---------------GGEPVRLYRAEDAREE-------ARFVAEEIARL----------- 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                     VL R    + L+            I           +   +KDL+A  R 
Sbjct: 341 --GPPWDRYAVLYRTNAQSRLLEQAL----AGRGIPARVVGGVGFFERAEVKDLLAYARL 394

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA--NCGISKFQHV 484
            L+  D +S   +L +P          ++    + +    +E +++ A         +H 
Sbjct: 395 ALNPLDAVSLKRVLNTPPRGIGPATWARVQLLAQEKGLPPWEALKEAARTFSRPEPLRHF 454

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQ 541
           +  + EL  +  F     FF  +L A                + ++ ++E L      E 
Sbjct: 455 VALVEELQDLV-FGPAEAFFRHLLEATDYPAYLREAYPEDAEDRLENVEELLRAAKEAE- 512

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                LQ+ +  +           +     V +MT+H AKGLE PVVFLV     +  H+
Sbjct: 513 ----DLQDFLDRVAL--TAKAEEPAEAEGRVALMTLHNAKGLEFPVVFLVGVEEGLLPHR 566

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                          EE  RL YVG+TRA ++
Sbjct: 567 NSVSTL----------------------------------EGLEEERRLFYVGITRAQER 592

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           L +          +         + +    
Sbjct: 593 LYLSHAEEREVYGRREPARPSRFLEEVEEG 622


>gi|307328514|ref|ZP_07607688.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
 gi|306885782|gb|EFN16794.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
          Length = 1118

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 133/958 (13%), Positives = 279/958 (29%), Gaps = 99/958 (10%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +  E  + +   L      + +  + Y    +       L     L+  S  +       
Sbjct: 115  AAVELRDRMAARLGGASAPRATTFHSYCYALVRAHQDVDL-FVDPLRLLSGPEQDVVVRE 173

Query: 68   LLSS---------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            LL+           F+      +  + T+    +   +      ++   + +  R     
Sbjct: 174  LLAGQAELAREGRAFVRWPDDLRACLTTRGFADEVRAVL-----ARSRELGLGPRALGEF 228

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              ++     + A    A Y +      VLD+ +L+     L  + +V+A     +    +
Sbjct: 229  AERTGRPDWSAAAGFLAEYLDVLDAQGVLDYAELVHRAVLLAGRPEVAAE----LAGRYD 284

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             + +DE QDT + Q  ++ +L              RTL A GD  QSIY+F GA+   +L
Sbjct: 285  AVFVDEYQDTDVAQGRLLGALAG----------GGRTLLAFGDPDQSIYAFRGADVGGIL 334

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            R +    +     G+   +  L +S RS A +L    ++       +  +          
Sbjct: 335  RFREDFPR---ADGRPADMEVLTVSRRSGAVLLAATRRITGRMPLTRLPARAVRAHRELA 391

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---ARRIAYTISN 355
            + R G  G V+ +    +  +              D +P    A ++    R I      
Sbjct: 392  AVRDG--GRVEAYTYPTAGAELDNVADILRRAHLEDGVPWREMAVLVRAGGRSIPGVRRA 449

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF---LKNDYKISVVGNDRFIL 412
            +             +    +  V           T        L     +          
Sbjct: 450  LTSAGVPVEVDGDDIPLRHEPAVAPLLTALRAAATAALPDSGGLSAVLGVETALTLLTSP 509

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
               +   DL  LGR +  +E++ S    +  P      + + +   +    +  Y    +
Sbjct: 510  LGGMDAADLRRLGRAL--REEERSAGRAVPRPSDVLLAEALAE-PERLAVHDPAYARGAQ 566

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                 +   +  +                  +   L     R     R  +  +D +   
Sbjct: 567  RLGPLLRTAREALARGGTAEQALWQLWDGTSWPGRLERAAQRGGTAGRNADRDLDAVCAL 626

Query: 533  LN-FTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                    E+         + E++                + VR+MT H AKGLE  +V 
Sbjct: 627  FETAARAEERTGGRGALNFLEEIDAQDIAADTLSRRMVRPDAVRLMTAHRAKGLEWALVV 686

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +      ++     +   +        G+   +P                  +   E  R
Sbjct: 687  VAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLPPG----------------ALLAEERR 730

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM----------VYDSFHNDERVKKIK 699
            L YV  TRA ++L++      S +     R   ++                    V +++
Sbjct: 731  LFYVAATRAKERLVVTAVKAASEDGDQPSRFLTELGVPPTDVTQRPRRPLSVAALVAELR 790

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL-------FSPIKNDIN 752
             T           + +          R+E  + L+      +               D +
Sbjct: 791  ATTVDPDASEALRDAAARRLARLAALRDEEGRPLVPAAHPHRWWGLHEPTHSEVPLRDRD 850

Query: 753  EPYILNPSTIDTK-GKTNLESLLSDN--------QTFNRGLIIHKLL-QVIFTLPEHKRK 802
             P  L+ S +D      +L+  L                G ++H L  +V          
Sbjct: 851  RPVALSGSALDQLVNTCSLQWFLGREVKADAPSTAAQGFGNVVHVLADEVASGRTPADLA 910

Query: 803  NFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
              +            +A     +E +    ++ R L   +M         +E S    + 
Sbjct: 911  VLMERLDSVWDALAFDAPWKSRQEKEQARAALERFLHWHVMERGGRTPVATEHSFDVTLE 970

Query: 857  CPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                 + I G +D++    + + ++ ++KT        +     H  QL+ Y+  +++
Sbjct: 971  ADVYKVRIRGSMDRVETDGEGHAYVVDFKTGKQAVTRGDV---EHHPQLAAYQLAVRE 1025


>gi|46199364|ref|YP_005031.1| DNA helicase uvrD [Thermus thermophilus HB27]
 gi|46196989|gb|AAS81404.1| DNA helicase uvrD [Thermus thermophilus HB27]
          Length = 692

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 116/690 (16%), Positives = 206/690 (29%), Gaps = 138/690 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + L P             +L +       +          +         
Sbjct: 65  AAEEMRERL-RGLVPGAGEVWVSTFHAAALRILRVYGERVGLRPGFVVYDEDDQTALLKE 123

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           +L    L+ +  P K ++ +  N+    LK  L +  + +  +                 
Sbjct: 124 VLKELALSARPGPIKALLDRAKNRGV-GLKALLGELPEYYAGLSRGR------------- 169

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+EA K    LDF D+++    LL++ +    +   + +    I +DE QD
Sbjct: 170 --LGDVLVRYQEALKAQGALDFGDILLYALRLLEEDEE---VLRLVRKRARFIHVDEYQD 224

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS +Q+   R L  +             L AVGD  Q IYSF  A+ K +L   R     
Sbjct: 225 TSPVQYRFTRLLAGE----------EANLMAVGDPDQGIYSFRAADIKNILDFTRDYP-- 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  +  L  ++RST  IL   + V          +                   
Sbjct: 273 ------EARVYRLEENYRSTEAILRFANAVIVKNALRLEKALRPVKR------------- 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            +        D+  +       AR +A  I+ +           
Sbjct: 314 ---------------GGEPVRLYRAEDAREE-------ARFVAEEIARL----------- 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                     VL R    + L+            I           +   +KDL+A  R 
Sbjct: 341 --GPPWDRYAVLYRTNAQSRLLEQAL----AGRGIPARVVGGVGFFERAEVKDLLAYARL 394

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA--NCGISKFQHV 484
            L+  D +S   +L +P          ++    + +    +E +++ A         +H 
Sbjct: 395 ALNPLDAVSLKRVLNTPPRGIGPATWARVQLLAQEKGLPPWEALKEAARTFPRPEPLRHF 454

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQ 541
           +  + EL  +  F     FF  +L A                + ++ ++E L      E 
Sbjct: 455 VALVEELQDLV-FGPAEAFFRHLLEATDYPAYLREAYPEDAEDRLENVEELLRAAKEAE- 512

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                LQ+ +  +           +     V +MT+H AKGLE PVVFLV     +  H+
Sbjct: 513 ----DLQDFLDRVAL--TAKAEEPAEAEGRVALMTLHNAKGLEFPVVFLVGVEEGLLPHR 566

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                          EE  RL YVG+TRA ++
Sbjct: 567 NSVSTL----------------------------------EGLEEERRLFYVGITRAQER 592

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           L +          +         + +    
Sbjct: 593 LYLSHAEEREVYGRREPARPSRFLEEVEEG 622


>gi|118594717|ref|ZP_01552064.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
 gi|118440495|gb|EAV47122.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181]
          Length = 1074

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 121/808 (14%), Positives = 264/808 (32%), Gaps = 107/808 (13%)

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +DF   +      L++      +   +D +I+HIL+DE QDT+  Q + I+SLT++F   
Sbjct: 355  MDFTQALRYATLTLQQ----TSVAEIMDNQISHILVDEYQDTNEAQVKFIKSLTDNFSG- 409

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                +  ++ F VGD  QSIY F  AE +     +            +   +EL ++FRS
Sbjct: 410  ----NPKKSFFVVGDPMQSIYRFRKAEVRLFKEMQT-----NGVGDLRPISLELTVNFRS 460

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            +  I   ++      +      +     I++   +                  +      
Sbjct: 461  SKRICHWLNT--EYRKTFGLKDDVDKGLIKYNPCKSD--------------PKNDDIGTG 504

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
              +          ++ +  A  +   I N+            +  +   I VL R R   
Sbjct: 505  IHFHMLKGFRKASANKANEATYVYDLIVNI-----------CKDSKLSQIAVLARNRSHL 553

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
              I  +    +      +V  +   L D  + +D+++L + +    D +S++  L++P  
Sbjct: 554  REILSIFHRKQIPNGFKLVTTEIDNLQDKQSFQDILSLTKALYDLSDKISWIATLRAPWC 613

Query: 447  NFSEDDIFKICTQRHETETVY-----EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
              +  D+  +     +  +       E +   +  G+ +     K +   I      +  
Sbjct: 614  GLTLKDLCVLFEDCSDMSSWEIINRQESLSNLSADGLVRLNFFKKVVERNIQNRGRIAHR 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
             F   I     G +  +       ID   + ++         +  L+ LI  +       
Sbjct: 674  FFIESIWRQLNGEELLLDPNDIVYIDTFLDNIDKASTPLSIDFKLLERLIENIHTSS--- 730

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             +++     E+  MT+H AKG+E   V +   G  + +            +  D  I   
Sbjct: 731  -QSNDKASKEILFMTIHKAKGMEFESVIIPGLGQPLKNDGQSL-------IAIDKDILSI 782

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                   +N+            + E  RLLYVG++R+ +   +      + + + N R+ 
Sbjct: 783  NNFKVDDSNLYDYQQSKETLRLKNERVRLLYVGISRSIEDCHLIGTVKPNKDGEYNARSD 842

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              ++       +   + K  +S   ++  +  + ++ P+   ++ +      + +  I  
Sbjct: 843  -SLLKILEPIIKDCNQWKFIDSKRVEDEKSVSYESYQPKLRRIKTDSLKANEITDTHIFD 901

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
            K+             L P                DN     G IIH+  ++I        
Sbjct: 902  KILG---------KELKP--------------DHDNIYTYTGTIIHQYFKLIIKKQLDIN 938

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLL--------ENPMMTTAMS--CDSYSEVSV 851
                       A        K  +     ++                 +   D   E+  
Sbjct: 939  YILSNKLDYIQALFIKKDYKKEEITMALDVIKKSLLSLCNTEDGQWIYAVHEDDQIEL-- 996

Query: 852  SGKINCPKKDIIISGRIDQISISQQNIFIFEYK---THHHVPQEIEHIPYTHIAQLSIYE 908
               +      + +    D+  I+    ++ +YK   +      ++      H  Q+S+Y 
Sbjct: 997  -QHLIRLGGTLEVR-VPDRSFINDNTRWVIDYKILFSDK----DLITEVKKHTGQMSVY- 1049

Query: 909  KILKDSYPNK-SLVCLLIYVSEPKVFII 935
               +  Y NK  +   + +  + K+  +
Sbjct: 1050 ---ESLYDNKYPIKKAIYFAPKGKLITL 1074


>gi|164425999|ref|XP_960368.2| hypothetical protein NCU04733 [Neurospora crassa OR74A]
 gi|157071159|gb|EAA31132.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 850

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 109/692 (15%), Positives = 206/692 (29%), Gaps = 157/692 (22%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+   +++ +LD++DL++   +LL+K              I  +LIDE QDT+ +Q+
Sbjct: 184 YTEYQTHLERSNLLDYDDLLVRCVELLRKFPSCV-------SNIQTVLIDEYQDTNGVQY 236

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E++R L +            + +  VGD  QSIY +  AE K + R  R   K       
Sbjct: 237 ELMRLLAQ----------KHQRITIVGDPDQSIYGWRSAEIKNLWRLLRDYPKTDE---- 282

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I L  ++RS+  IL +   V    +               R               
Sbjct: 283 ----ISLEENYRSSQAILDLSLLVIQQDKKRYQKVLKPVHDRGSRPV------------- 325

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQ 372
                                 L +  +AS  A  I   I   ++ + ++        + 
Sbjct: 326 ----------------------LRKLKNASTEAEWIVAEIRRALLMSGSM--------LT 355

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D+ VL+R    +  +            I       F   +   IK ++   R I   +
Sbjct: 356 HNDVAVLLRSASLSRHVESAL----GKAGIPYRMVGGFKFYERSEIKTILDYLRVIHQPD 411

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI----------------QKFANC 476
           ++ +F  ++  P     +  I  +  +  ++      +                +     
Sbjct: 412 NNDAFGRIMNVPKRGIGDGTIKNLIEEAEKSSLSLYSLLVKHCRGDRTAKTKITKHAEQK 471

Query: 477 GISKFQHVIKYIHELIHIAQFCSPH---DFFTLILGAK---KGRQQFISRFGNEVIDVLD 530
              +   ++  I + +  A   +P    D    +L A       Q        +    + 
Sbjct: 472 ISGELIRMLNGIRKKMEEAAESNPFGLVDLIEHLLTALNFQNYLQVTYPDDHEQRWANVQ 531

Query: 531 EFLNFTLRN-------------------EQNSYSSLQELISELEQYPPTIKRAH-SANHN 570
           EF++                        +      L + ++ +       K      N  
Sbjct: 532 EFISLANDFVRDLHVSGEDALPEIEGLEQSKEEEVLPQFLANVSLASDAQKGEEGQENKP 591

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V I T+H AKGLE P+VF+    +    H                              
Sbjct: 592 LVTISTIHAAKGLEWPIVFIPAVYNGSIPH------------------------------ 621

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS--NTSNEKKSNQRTWYDMVYDS 688
                   ++    +E  RLLYV MTRA   L +      +  + +++   ++   V +S
Sbjct: 622 --------MRSEDGDEERRLLYVAMTRAQSLLYLSYPVYHSPGSSERTEMSSFVSPVANS 673

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP--LEREETIKQLMDEQKIPKKLFSP 746
           F       +  L   I K             +  P     E+ +  +  +    +     
Sbjct: 674 FAKKGPTFERPLMTHIAKVLQRELPSEKEIFKGIPNMSHTEDNMYPIDPDDAFQESGQGF 733

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
             +    P + NP  I T            + 
Sbjct: 734 DSSRSKRPKLYNPVAISTGDGHEEPQWAKPHA 765


>gi|167627557|ref|YP_001678057.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Francisella
            philomiragia subsp. philomiragia ATCC 25017]
 gi|167597558|gb|ABZ87556.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella
            philomiragia subsp. philomiragia ATCC 25017]
          Length = 1185

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 135/916 (14%), Positives = 273/916 (29%), Gaps = 153/916 (16%)

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
             ++K       ++RD     K   +T         +   + +AK++  VLDF+DLI    
Sbjct: 263  ARVKPIFTGIKELRDLQEEIKKANATQFIKQACLQIRQDFSKAKEQKGVLDFDDLITKLC 322

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI--------RSLTEDFFVGKNT 209
              +K+      +   +  +    LIDE QDT   Q+E++        + L      G + 
Sbjct: 323  QSVKQSPD---LVKTLQHQYPVALIDEFQDTDAEQYEILDTIYPQSNKLLHSPLERGADR 379

Query: 210  HS--------------SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
                                L  +GD KQ+IY F G +    L+ K              
Sbjct: 380  RGVVSVTDSPSSQRGIDDLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCSND-------- 431

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +   +  ++RST++++   +++F   +            I         V       +  
Sbjct: 432  NQWSMDTNWRSTSEMIKAYNRLFYKQDYLSEEEGQIGANIFSDGIGYQLVKASPKANEKA 491

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
               D    P    +    +   +    + L+   A  I  ++ +  +            D
Sbjct: 492  KDFDDNLKPINYFYYQVAEDDNKSDIDNNLSAWTANEIVRLLNSKKVVE---------SD 542

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I +LV   K   +I    +  K     SV  + R  +       +++AL   I   E+  
Sbjct: 543  IAILVENGKQAKVIQKALQAKKLS---SVYLSQRDNVYHSQEATEILALMEGINDLENKS 599

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                 L + L          I        + ++   + A                L    
Sbjct: 600  MLKRALSTSL--LGGRADKFISYIDENDVSAWDEEIEKA--------------KSLRQQW 643

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554
                   F   ++     ++          I  L E +       ++    ++    +L 
Sbjct: 644  HKYGFMAFIMQVIHQNFTQRSDSKERVITNILHLAELIKVAENKYKHPNQLIKWYRQQLN 703

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   +    ++ N ++I+T+H +KGLE  VVF+            +           
Sbjct: 704  STATSEGELRLESDDNLIKIITIHGSKGLEYSVVFIPFASYVSSKKFQVGDFSKYYDK-- 761

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                  ++ Q+  +      +   ++    EE  RL YV +TRA  +  I   +  SN +
Sbjct: 762  ------YLKQTVYKIGKDDSIKPQIENEVIEELMRLFYVAVTRAEHRCYI-GVAKYSNSE 814

Query: 675  KSNQRTWYDM-----------------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            KS    + D                  V  S   D        + ++  ++   ++   +
Sbjct: 815  KSPLARFLDYQKDDDWLEKIQIITNNPVNQSSLIDVATSHCNESENLITNDQFDHDTLQN 874

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
               N   +      +++   KI K        +       + S   ++ +  LE   +  
Sbjct: 875  LKANDINKLANDNWEMLSFSKISKSKAQNTALEKEPDESEDDSAQKSQQE--LEFRFTAP 932

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL----- 832
            +  + G I+H +L+           N +     +  K+  A+++  L + +   L     
Sbjct: 933  KGADIGNILHNVLEHTDFSLGKIDDNLLQEQMDRY-KVVAAEDFDKLKVWLEECLVASIP 991

Query: 833  --ENPM-------------------MTTAMSCDSYSEVSVSGKINCP---KKDII----- 863
              E                      +    +  +  E      I      KK+II     
Sbjct: 992  SIETADFSSNDIQYGLFDIKDKGFCLKDISNTKTLKEAEFYFPITNEKLYKKNIIKILAE 1051

Query: 864  -------------------ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT----- 899
                               + G ID I       ++ +YK+++      ++         
Sbjct: 1052 YRNQTIDYDEFASQKIFGMLHGFIDLIFEYDGKFYVADYKSNYLGSTLEDYNQAAMSEKN 1111

Query: 900  ----HIAQLSIYEKIL 911
                +  Q  IY   L
Sbjct: 1112 QSSFYDLQYLIYSVAL 1127


>gi|295132152|ref|YP_003582828.1| UvrD/REP family helicase [Zunongwangia profunda SM-A87]
 gi|294980167|gb|ADF50632.1| UvrD/REP family helicase [Zunongwangia profunda SM-A87]
          Length = 1040

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 137/851 (16%), Positives = 285/851 (33%), Gaps = 113/851 (13%)

Query: 84   IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
             + +        ++ ++        K+      Y      L  L+L   LN   ++ K++
Sbjct: 287  PLKKGKMALGEAIQPQILDLFIHTKKLFFSLEFYTEIGKRLTQLSLLNALNREIQQIKEE 346

Query: 144  NCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
              +L   +F  +I            + +I  ++ +   +  IDE QDTS +QWE +  L 
Sbjct: 347  RQILLISEFNPMISAQVK----DQPAPFIYERLGERYQNYFIDEFQDTSQMQWENLIPLI 402

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            ++    ++  +   +L  VGD KQSIY + G + ++ +               +  +  L
Sbjct: 403  DNKLSMESLPNETSSLMLVGDAKQSIYRWRGGKAEQFI----DLSNEGNPFQIQKQVYNL 458

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            P ++RS A+I+   ++ F                  + +  +G      L++   S  + 
Sbjct: 459  PDNYRSAAEIVNFNNRFFG-----------------YAADFLGHPQYSNLFK--QSAQNP 499

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            + +       S+ ++  +E    +   ++   I+N+            +  +  DI +L 
Sbjct: 500  KKSGSGYVNISFIEAENREEEQEVYPEKVIEIINNL----------DTKGFKRADICILT 549

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R++ +   I       +    I VV ++  +++    +  +  L +F ++ E++      
Sbjct: 550  RRKSEGVAIASTLNEKE----IDVVSSETLLISRSPEVHFICNLLKFSITPENNE----- 600

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            LK  +F F ++ +  +   +     + E I++  N   +  Q         +      S 
Sbjct: 601  LKLSIFAFIQEYLLSL---KDPHAVISEKIKENGNNFFTWLQEF--EFDFNLDFLNEYSV 655

Query: 501  HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            ++    I+ +             +    +  FL+F     Q     +Q  +   EQ    
Sbjct: 656  YESCEYIIRSFG--------LVKDSNAYIQFFLDFVYETTQKDTEGIQGFLEIWEQENDK 707

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
            +        N V IMT+H AKGLE P+V      S     +            +D  +  
Sbjct: 708  LSIIAPQQENAVTIMTIHKAKGLEFPIVIYPFANSDFKDTRKDSLWVPNDEHLNDIPVSY 767

Query: 621  WIPQSKSRN--NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                SK  N   I   L   L    + +   +LYV  TR   QL I    +       + 
Sbjct: 768  INASSKMENWGEIPDALYTQLLFQNELDTLNVLYVACTRPVKQLYILSKLDLDRNGNESA 827

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                 ++      ++               W   + S    E  P   +E     +  Q 
Sbjct: 828  SKTSGLLIGYLKQNKL--------------WKDEQKSYEFGEMEPPTSKEIENLGITLQH 873

Query: 739  IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
                                   ++   ++         +   +G IIH LL  I    E
Sbjct: 874  FYSSATQNH-------------AVNIVTRSGSLWDTKQQEAIEKGEIIHDLLAEI--NTE 918

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLENPMMTTAMSCDSYSEVSVSGKINC 857
               K  + +          A+E    + +I   ++ +P +    S    +      +I  
Sbjct: 919  KDLKPVLKNAIAN---GIIAEEVSETIENILNSIITHPELEVYFSETVKN--DNEREIIT 973

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
               + +   R D+++  +  + I +YKT              H  Q++ Y + L +    
Sbjct: 974  KSGERL---RPDRLNFKEHLVSIIDYKTG--------AFDTKHERQINNYGETLSNM--G 1020

Query: 918  KSL-VCLLIYV 927
              +   +L+Y 
Sbjct: 1021 YQIDKKILVYT 1031


>gi|226228582|ref|YP_002762688.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27]
 gi|226091773|dbj|BAH40218.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27]
          Length = 1210

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 131/1038 (12%), Positives = 292/1038 (28%), Gaps = 197/1038 (18%)

Query: 31   INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEIN 90
             NK   L+ E G  ++    Q  +              L+          + N + ++  
Sbjct: 248  WNKGAVLATEDGLASLDALIQEARA-----GSLAAMQGLAGALNIDALQAKANKVGKQNR 302

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
              +  + +         +    +     +           + ++      K++  ++ F+
Sbjct: 303  ATADGIADWPIAVAATALAAAIQQLVLAVRA------DCLQDVDDRVRTLKRERSLMGFD 356

Query: 151  DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
            DL+   + +L  +     +   I Q+    LIDE QDT   Q+ V R             
Sbjct: 357  DLLGQLHAVLAAQGSEGLLARAIRQQFQAALIDEFQDTDSHQFHVFRI-----------A 405

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
             + + LF +GD KQ+IY+F GA+ +  L   R          Q      L  +FRST  +
Sbjct: 406  FAGQPLFLIGDPKQAIYAFRGADVRAYLEAAR----------QASHRYSLEFNFRSTPPM 455

Query: 271  LTVVDKVFSIPENAQ---GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +  V+ +FS          ++    T      +  G  G+  L    V       N    
Sbjct: 456  VQAVNALFSRSTAPFVEPEIAFHPATARNFDPNPKGVAGSHGLHWLFVPPDTRNGNSVP- 514

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                     P   + ++L R  A  I++ I  +          +    I VLVRK  +  
Sbjct: 515  --------TPIGQARTLLFRACASRIASYIKQE----------VPPGRIAVLVRKGFEGV 556

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
             +  +         +  V +    +   L + +L  +   I    D       L + L+ 
Sbjct: 557  EMVQVLAE----AGVRSVVSGLGDVMQSLEMAELQRVLEAIAVPRDPSRVRAALATTLWG 612

Query: 448  FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             + +D+ ++ +   E E      +  +   +   Q  ++ +  L             +  
Sbjct: 613  ATHEDLVRLASPEGEREWEEILTEVASLRELWATQGTLQLLERLFESR------AVVSRY 666

Query: 508  LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYPPTIKR 563
            L    G ++  +      +    E L+     +    + +   L     E  +     + 
Sbjct: 667  LTYTDGDRRLTN------LRHAQELLHGAAEQDALSIEGTLRWLDAARREPAETRGVREL 720

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               ++ + V+I+TVH +KGLE  +VF              +     P L  + G  ++  
Sbjct: 721  RLESDDDAVQIVTVHRSKGLEYDLVFCPTLW------GVRRVEPDAPVLVHEQGRVVYDH 774

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK----------------- 666
             S      +++     ++    E  RL+YV +TRA  +  +                   
Sbjct: 775  GS----PRLAERTAQAERERLAEDCRLVYVALTRARFRTYVAWGPIGNAPNGSEQSALSW 830

Query: 667  -------------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                          +  +++ ++    W  M+         +  + + ++      +A  
Sbjct: 831  LLFDGAAAPDRDGPAAVADQLRAAPDAWQGMLRSLVDAHPSLMALDMVDTWQPIAPVAAA 890

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                       +                  F+ +   + E      S    + +      
Sbjct: 891  PQAPPLTGHARQLPSVPSLRERFSTFSIASFTSLTAGVYESLRAEMSEQVARDRDAQPDA 950

Query: 774  L-------------SDNQTFNRGLIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLWPAK 819
                          +       G ++H + +   F       +                 
Sbjct: 951  TPVTTVTNDPHDFRTFPAGAVPGTVLHAIFEHAHFDGSPAAWQEIADRELLVLGFDEDEH 1010

Query: 820  EYKNL--LLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKK----------- 860
            E +    +  + RLL+ P+      +    +  +  E      +                
Sbjct: 1011 ELRTASTVRMMQRLLQAPLPGLGFALAAVPASRTRREWQFLLPLASADHVMTRQALAAVF 1070

Query: 861  -----------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                                      ++G +D +   +   ++ ++K++        +  
Sbjct: 1071 AQHGGAHGAAYADQLRRLSFNRLHGYLTGFVDLLFEHEGRWYVVDWKSNQLGADNGAYKS 1130

Query: 898  ---------YTHIAQLSIYEKI----LKDSYPN-----KSLVCLLIYVS---------EP 930
                     + +  Q  +Y       L    P+             ++            
Sbjct: 1131 SALQTVMDDHHYTLQYHLYLVAAHRFLAQRVPDYDYDTHIGGAAYAFLRGFADASVDGTG 1190

Query: 931  KVFIIPQNKLNKAFAEIS 948
                 P   L +A +   
Sbjct: 1191 WFVHRPPAALIRALSAAL 1208


>gi|149921690|ref|ZP_01910138.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1]
 gi|149817428|gb|EDM76900.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1]
          Length = 845

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 107/772 (13%), Positives = 209/772 (27%), Gaps = 166/772 (21%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
           E    + +            I  + S+           +   L +       +++ +L+ 
Sbjct: 68  ERIAGLLEMELDELRRDGPWIGTFHSICARI--LRRHGQGVGLTRNFSIYDADDQKTLMR 125

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
                    P+    +  + K             D    +    +       +    +  
Sbjct: 126 RVLKDLDIDPKAFSASAALGK------------IDAAKNLGYARHQLDAMNYSEPVASWT 173

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-------KRDVSAWIRYK----------- 172
           +     YE   +    +DF DL+    +LL+       +    ++               
Sbjct: 174 RKAWTLYEGRLRAADAVDFNDLLALAVELLRKAKPAQPQPGARSFGSGSGSGSGSGARRM 233

Query: 173 -------------------------IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
                                    + +   H+++DE QDT+ +Q E++  L        
Sbjct: 234 ALRTTRGPGSGAPTASGGAVNPVLGLRRRFFHVVVDEFQDTNPVQAELVELLCG------ 287

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   L  VGD+ Q+IY + GA+ K++L           +      +I L  ++RST
Sbjct: 288 ----PSAQLCVVGDDDQAIYGWRGADVKQILNF--------PDRHPGCEVIRLEQNYRST 335

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             IL   + V                                LW  +     ++ +   +
Sbjct: 336 THILDCANAVIRGGARRHSKR---------------------LWSDLGPGERAELHGFAD 374

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A+ +A  +   I                 +I V  R    + 
Sbjct: 375 --------------ERDEAQYVARRVRRAIDEGE----------SPGEIAVFYRTHAQSR 410

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            +    R       +           D   IKDL+A  R + +   DL  + ++  P   
Sbjct: 411 PLEEAMR----LAGVRYRMLGGIRFFDRREIKDLIAYLRLLTNPGSDLDCLRVINVPARR 466

Query: 448 FSEDDIFKIC-TQRHETETVYEYIQKFANCGIS---------KFQHVIKYIHELIHIAQF 497
                I ++      +  ++Y+     +  G             +   + +  L   ++ 
Sbjct: 467 IGARTIERLSAWAISKESSLYDACGPASKHGEEAGLGRAAVKAVKGFWELVEGLRDDSEE 526

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
            S H+  +L+LG     + F +    E   + L EF        +        L   LEQ
Sbjct: 527 LSHHETASLVLGRTNYLESFAAEQDAETRTENLYEFRGALEEFGEEQPD--VSLAEYLEQ 584

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                    +     + +MT+H+AKGLE   V L     +VF H                
Sbjct: 585 ISLAAGGDEATVDAAITLMTIHSAKGLEFDRVMLTGMEERVFPHVRSLDPENPKG----- 639

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   +   EE  RL YV ++RA   L +           +
Sbjct: 640 ------------------------REALEEERRLAYVAISRARRWLSLSFVERRFLWGST 675

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                   +          K + L  +  +   +A        ++      E
Sbjct: 676 QLNEPSRFLRALPEEGIVRKGLALKQNKQRARALAPRRREPSWDDDIELDPE 727


>gi|260654127|ref|ZP_05859617.1| ATP-dependent DNA helicase PcrA [Jonquetella anthropi E3_33 E1]
 gi|260631112|gb|EEX49306.1| ATP-dependent DNA helicase PcrA [Jonquetella anthropi E3_33 E1]
          Length = 673

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 103/740 (13%), Positives = 203/740 (27%), Gaps = 145/740 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  K  W +   +V              N    +    L  +        +
Sbjct: 48  GAGSGKTRVLTRKIAWLIDAQRVKPWRILAVTFT---NKAAREMLDRLTASLGENLAGLQ 104

Query: 66  FSLLSSFFLTQKFTPQKNIIT------------QEINKKSPDLKEKLKKSQDEFIKIRDR 113
                SF L   F  +  +               +    +  + E L    +++      
Sbjct: 105 VRTFHSFGLQMLFRSRAQLEQLGYPPQCVVYDRADSLSAAKAVLEALNLDPEQYTPAWVL 164

Query: 114 FNTYKM--------FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
               K                 ++   L   Y+   K     DF+DLI    +LL +   
Sbjct: 165 ETISKAKNSGAGLGAFDNSPMKSIVGPLYERYDGLLKSRGAWDFDDLIALPLELLTRFPE 224

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              ++ +  + ++ +L+DE QD +  Q+ ++R L           S    L AVGD  QS
Sbjct: 225 ---VKEREQKALDWVLVDEYQDVNAAQYRLMRLLA----------SGGANLTAVGDPDQS 271

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY + GA+   ++  +R             S++ L  ++RST  IL   + + S   + +
Sbjct: 272 IYGWRGADMSMIMNFERDFP--------GASVMLLEQNYRSTGGILEAANSLISHNFDRR 323

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             +  +      +        +                                      
Sbjct: 324 EKNLWTDREQGAKPQVWNCPTSDD-----------------------------------E 348

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  I   I   + +            +A D+ +L R    +  I          + +   
Sbjct: 349 AELITTEIERFLSSG----------YRASDVAILYRMNALSRRIEESL----LSHNLPYQ 394

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-----TQR 460
                   D   ++D+++  R  L+  D  S   +   P        + K+       + 
Sbjct: 395 VVRGQGFFDRREVRDVLSYLRLALNPYDRASLDRVGNLPTRGLGPRSLDKLDAYLLSHRT 454

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFI 518
            +   V+  + +       +     + +   +               +IL          
Sbjct: 455 ADPADVWAAVAQTGAELSGQGAAGARQLAGAMGEILGCGGDLKRALDVILMRIGYETVLQ 514

Query: 519 S---RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                   +  D + E L+     +         L   L Q          +    + + 
Sbjct: 515 KIDPAGWEDRYDNVMEILSLAGDGDS--------LPELLAQAALYTDADRDSGGQGINLS 566

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H AKGLE P+VF++     +F H                                   
Sbjct: 567 TLHGAKGLEFPLVFMIGLEEGIFPHSRSSDDP---------------------------- 598

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                 +  EE  RL YVGMTRA ++LI+ +         +  +     + +   +    
Sbjct: 599 ------AEIEEERRLCYVGMTRAQERLILTRVRERRLFGSTTTQRPSRFLAEIAPDLRDE 652

Query: 696 KKIKLTNSINKDEWIAYEWS 715
                        +      
Sbjct: 653 FDFGEVRPSVGYRFNRPSRR 672


>gi|282916218|ref|ZP_06323980.1| exonuclease RexA [Staphylococcus aureus subsp. aureus D139]
 gi|282319658|gb|EFB50006.1| exonuclease RexA [Staphylococcus aureus subsp. aureus D139]
          Length = 729

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 104/712 (14%), Positives = 211/712 (29%), Gaps = 99/712 (13%)

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS--NGKKRVIQ 372
               +S      +            + +   A  I   + +++    ++    G  R   
Sbjct: 21  APYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSAT 80

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            KDI++L R            +    +  I    N R    +   ++ +++  R I +  
Sbjct: 81  YKDIVILERSFGQARN----LQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPL 136

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI------SKFQHVIK 486
            D+  V +++S ++ F ED++ +I       +  Y+ I  + N          K +  + 
Sbjct: 137 QDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLS 196

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYS 545
            IH     ++    +             Q F    G       L    N  +  E +S+ 
Sbjct: 197 DIHSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFR 256

Query: 546 SLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            L + I  +++     K     N      N VR+MT+H++KGLE P V            
Sbjct: 257 GLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKR 316

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
              + + +               +    +          +K    E  RL+YV +TRA +
Sbjct: 317 DLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKE 376

Query: 661 QLIICKHSNTSNE---------------------KKSNQRTWYDMVYDSFHN--DERVKK 697
           QL +                                +     Y ++         + +K 
Sbjct: 377 QLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKF 436

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLER----------------EETIKQLMDEQKIPK 741
            K    I          S  + E+   E                 +   + +  + K   
Sbjct: 437 EKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQL 496

Query: 742 KLFSPIKNDINEPYILNPSTI-----------------------DTKGKTNLESLLSDNQ 778
               P  ND  +P   + S +                        T  +    S     +
Sbjct: 497 DYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRK 556

Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLL-LSITRLLENP 835
               G ++H ++Q +    E   +  +  Y     +  +  A   K++    I   + + 
Sbjct: 557 ANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSE 616

Query: 836 MMTTAM-SCDSYSEVSVSG------KINCPKKDI-IISGRIDQISISQQNIFIFEYKTH- 886
           + +    +   Y E+          ++    +D+ II G ID I +     +  +YKT  
Sbjct: 617 LYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDA 676

Query: 887 --HHVPQEIEH----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
                    E     +   +  Q+  Y+  L+    NK +   L +     +
Sbjct: 677 FNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTIL-NKEVKGYLYFFKFGTL 727


>gi|78065794|ref|YP_368563.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. 383]
 gi|77966539|gb|ABB07919.1| Exodeoxyribonuclease V, beta subunit [Burkholderia sp. 383]
          Length = 1236

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 122/985 (12%), Positives = 260/985 (26%), Gaps = 129/985 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             +W      +  + +    ++   +      A  L   +      +  + L    L    
Sbjct: 240  RMWAAEREAIEALLRTAQPALNQRSHKPEAVADALAAWTAHFAQGDATAALPKAALKLTR 299

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T       +          +     +              +             L     
Sbjct: 300  TALVKATKKGGTTPEHAFFDVANALEAAVAAAEAAQRARWLALIAEWLDMAPGELAER-- 357

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 358  --KRTRRVVSFDDLLANLYHALHAHP---WLAETLRARYPAALIDEFQDTDPLQFAIFDR 412

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +                 
Sbjct: 413  IFA----------PGGPLFLVGDPKQAIYSFRAADLHTYLAARAR----------ASERY 452

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   ++ F     A  L       +R  +          +    V   
Sbjct: 453  TLAVNQRSTPAIVDACNRFFMSNPRAFVLDGLDYYAVRAGTR---------VRAPFVDAT 503

Query: 319  DSQCNPQQESWTSYFDS--LPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKD 375
            D         W        L +  + +  A+  A  I+ ++              +   D
Sbjct: 504  DPGPAGDFRVWALPGGEGTLLKRDAQAQAAQACAAEIARLMRGAREGRVRLGDTPLSPGD 563

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I VLV+  +   L+        + + I  V   +  +      + L  +   I +  D  
Sbjct: 564  IAVLVQTHRQGSLVKRAL----STWGIGSVELAQASVFSTHDAEQLERVLAAIDAPGDLR 619

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                 L S  F      ++++     + +   +     +   +S  +   +Y        
Sbjct: 620  RLRAALASDWFGLDAGALWRMEQ--GDGDAQRDASAADSADAMSWVERFSRYRLLWRERG 677

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-EL 554
                   F   +  A++             I+ L E        +     +L+ L +  L
Sbjct: 678  FAVMWRTFTRELRIAERLMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRL 737

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +      +    ++ N V+I+TVH +KGLE  +VF                +      +D
Sbjct: 738  DGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPPASALPDAREYHD 797

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSN 672
            D G  +        +       +   +    E  RL+YV +TRA  +  +    + ++ +
Sbjct: 798  DAGDAVLHYGC--DDEAAEHAARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRS 855

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +++ +     +V  +  + +         +     W A           P         
Sbjct: 856  TREARRSVLNWLVAGAGQSFDAWLDEPPDEAALDTAWQALAGGPVSVAPLPAPVRPERLA 915

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------------------------- 764
               +           +   +   + + S++                              
Sbjct: 916  AGHDASQTLAARHATRMLRDAWRMASFSSLTATMAREEAGVAAVPDDELRPDHDALAAVT 975

Query: 765  -----------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                         +   + +L   +    G  +H+L ++                     
Sbjct: 976  PDGEWLLADPVAPEPPDDDILVFPRGAAAGECLHRLFELSRFTEPESWPRAALGALHDRP 1035

Query: 814  KLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSV------------- 851
                 +    L   + +L+++           +          E+               
Sbjct: 1036 VEAEPELATRLPAMMVQLVDDVVRTELVPGMRLADLDPAKRLDEMGFLFPAPALDLMALR 1095

Query: 852  ---------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH---------HVPQEI 893
                        +        I G ID I       +I ++K++H             ++
Sbjct: 1096 RLLVAHGYPDVALEAGMLAGFIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGPRALDV 1155

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNK 918
                + +  Q  +Y   L      +
Sbjct: 1156 AMADHAYHLQALLYTVALHRYLRGR 1180


>gi|317404550|gb|EFV84957.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54]
          Length = 687

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 102/604 (16%), Positives = 193/604 (31%), Gaps = 115/604 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y         +DF+DLI     LL   +    +R +    + ++L+DE QDT+
Sbjct: 169 AANVYRSYAATLAAYQAVDFDDLIRIPAILLANNEE---VRTRWQNRVRYLLVDEYQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q+ +++ LT                 AVGD+ Q+IY++ GA  + + +          
Sbjct: 226 VCQYRLVQLLTG----------PRAMFTAVGDDDQAIYAWRGATIENLAKLTTDYPN--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RS   IL   ++V             S   +       G+   V 
Sbjct: 273 -----LKLIKLEQNYRSVQRILAAANQVIEKNPKLFEKKLWSDLGV-------GEPILV- 319

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                               A  IA  IS          +  +R
Sbjct: 320 ---------------------------SAMDGEEHEAESIAMKISA---------SRFER 343

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             Q KD  +L R    + ++    R LK    I           D   ++D++A  R + 
Sbjct: 344 QAQWKDFAILYRGNHQSRILEQALRNLK----IPYTIAGGQSFFDKAEVRDILAYLRLLA 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQ 482
           + EDD +F+    +P     +  +  +         ++   + +       A   +   +
Sbjct: 400 NDEDDPAFIRAATTPKRGIGQATLQTLGQYAASRELSLLAAVDETGLESLLAPRQLEPLR 459

Query: 483 HVIKYIHELIHIAQFCS---------------PHDFFTLILGAKKGRQQFISRFGNEVID 527
              ++I  +   A   +                 D    I   +   + F  R       
Sbjct: 460 TFTEFIRRMQWRAGRGATAGADGAPAEPAGVILDDLVQAIQYERHLFELFDERPAQTRWQ 519

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            + E   +  R  +    SL EL+  +       +       + V++ T+H +KGLE P 
Sbjct: 520 NVLELTGWLKRKAEEDNMSLFELVQHVALVTMLERGE-EEEPDAVKMSTLHASKGLEYPH 578

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V+L      +  H         P                               +  +E 
Sbjct: 579 VYLAGVEEGLLPHLGKDDEVGDP-----------------------ARAAENLATRIQEE 615

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL+YVG+TRA   L +         ++   R     + +   +   +++ + T ++N  
Sbjct: 616 RRLMYVGITRAQRSLNLSWCKRRRRAREDLVREPSRFIEEMGLDAPGIQEDEATAAMNPK 675

Query: 708 EWIA 711
           E +A
Sbjct: 676 ERMA 679


>gi|144899243|emb|CAM76107.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 745

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 102/606 (16%), Positives = 192/606 (31%), Gaps = 119/606 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  L   Y+E  +     DF DL+++   L      +        ++  +IL+DE QDT+
Sbjct: 199 AGQLYRLYQERLRTLNAADFGDLLLHCLTLFLSHPDA---LAHYQEQFRYILVDEYQDTN 255

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q+  +R L +            + +  VGD+ QSIYS+ GAE   +L+ +R       
Sbjct: 256 VAQYLWLRLLAQ----------KHKNICCVGDDDQSIYSWRGAEVGNILKFERDFP---- 301

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 +++ L  ++RST  IL     + +   +  G +      ++H +S         
Sbjct: 302 ----GAAVVRLESNYRSTPHILAAASALIANNADRLGKTLR--PGLKHEAS--------- 346

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                    + +    +  W    +           AR +   I  +             
Sbjct: 347 ---------EIEKVRVRGVWDGPEE-----------ARVVIEEIETLQRRGE-------- 378

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
              A  + +LVR    T               I           +   I+D +A  R I 
Sbjct: 379 --SAASMAILVRAGFQTREFEERL----ITTGIPYRVIGGPRFYERQEIRDALAYLRLIN 432

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQ 482
           S +D L+F  ++  P     +  +  +            E   +     +          
Sbjct: 433 SPDDGLAFERIVNLPKRGLGDAALQAVHAVARARAFPLFEAARLLVETDELKPKPRGALS 492

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
                +     +       +   ++L      + + +    E    ++ L E +      
Sbjct: 493 KFCDDVLRWRSLLDDLPHPELAEMVLDESGYVEMWKNDKTPEAPGRVENLKELVRALSDY 552

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E         L S LE     ++       ++V IMT+H AKGLE   +FL      VF 
Sbjct: 553 EN--------LQSFLEHVALVMENDQRDGVDKVTIMTLHGAKGLEFDNIFLPGWEEGVFP 604

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                  +     +  EE  RL YVG+TRA 
Sbjct: 605 HQR--------------------------------AMDEGGNAGLEEERRLAYVGLTRAR 632

Query: 660 DQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            ++++   +N    +  + +    + D +       +  + +  + S          W+ 
Sbjct: 633 KRVLVTFAANRRIYNQWQSALPSRFLDELPAGHVEVQAERGLMGSWSQPAKPKGPGAWAI 692

Query: 717 HHPENT 722
              E T
Sbjct: 693 APKERT 698


>gi|264676501|ref|YP_003276407.1| exodeoxyribonuclease V subunit beta [Comamonas testosteroni CNB-2]
 gi|262207013|gb|ACY31111.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni CNB-2]
          Length = 1269

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 125/986 (12%), Positives = 277/986 (28%), Gaps = 139/986 (14%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSS 71
                 + L      +   +  ++   + T                +  + + E  +    
Sbjct: 238  RAQQLRMLGDGWEQKAQQLEDWLDGQLATNKSAWNGLKLKPANYKNWLKALREWAAAPHD 297

Query: 72   FFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
                   T    ++   +++    D   +L  +  E  ++             L      
Sbjct: 298  GLAAAMKTGATRLVPAGLDEARKGDAPVELHPASAELEQLLQALAQMPSLHVALRLHAAV 357

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              +       K++     F D+    +  L   +  A ++  I  +    LIDE QDTS 
Sbjct: 358  H-VQQRLLWLKRQAGTFGFADMQQRLDAALAGDNGPA-LQAGILAQYPVALIDEFQDTSP 415

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +Q+ +   +          +S+   L  +GD KQSIY F G +    L+ ++        
Sbjct: 416  LQYRLFDQIYR-----TADNSAGSALLLIGDPKQSIYGFRGGDIYSYLQARQA------- 463

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
               +     L  +FRST  ++  V++ F   E  +G         +        V     
Sbjct: 464  --TEGRHYVLDTNFRSTEVLVDAVNQWFVQAEVREGEGAFMFRAGQSNPLPFESVKANGR 521

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI---GTDTIFSNGK 367
             E ++               S  + L  +      A   A  I   +    T    +   
Sbjct: 522  KELLMQGSQRMAALTIAWDGSSDEPLSNDDIRRRGAEFCASQIVQWLMDGATGFAEAGQP 581

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             + ++  DI VLVR  K+   +      L      SV  +D+  +   +  +DL+   R 
Sbjct: 582  LQRLRPADIAVLVRTGKEAAAVRRA---LARRNVASVYLSDQDSVFASVEAQDLLLWLRA 638

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D L+    L +P+   S D++  + +         +      +  + +   +   
Sbjct: 639  VAAPLDGLAVRAGLATPMMGLSFDELAWLASD--------DEAFDARSELLKELHSLWLR 690

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +  L  + Q     +     L    G ++  +         L E L       +   + +
Sbjct: 691  LGVLAMLRQTLYRFELPARWLKDMGGERRLTNYL------HLAELLQGASAQLEGEQALI 744

Query: 548  QELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            + L +++E              ++ + V+++TVH +KGLE P+V L   GS         
Sbjct: 745  RWLATQIESPGAAGDAQIVRLESDADLVKVVTVHKSKGLEYPLVCLPFGGSFRPVDGKAA 804

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
             + +   ++        +P  +   +     +    K    E  RLLYV +TR    L +
Sbjct: 805  YLSLPVQIDG-------VPARELVLDYDDAQLAQADKERLREDLRLLYVALTRPRHALWM 857

Query: 665  CKHSNTSNEKK------------------SNQRTWYDMVYDSFHNDERVKKIKLTNSIN- 705
                      K                      +W   +         +  + L   +  
Sbjct: 858  GLAPMKRGNSKNCVNEQGAAGYLLAGDVSQAAASWRASIQALSERCMEIAVVDLPAELPV 917

Query: 706  -----------------------KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                                      W    +S+                     +  + 
Sbjct: 918  ASRYVAAQALPALAAAPVYEAQFDRRWGIGSFSSLTRAMAAPSLPVLPVAAQSPAEDERA 977

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF---------NRGLIIHKLLQV- 792
            L +    +      +    +         +  + +              G  +H  L+  
Sbjct: 978  LQAQEAGEAALDLGVINDVMTALPNLTRFAAGARSDAAVWHRFMRGPVVGNFLHDQLEWL 1037

Query: 793  -------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTT 839
                   +        +        +  +    ++  ++L  +  ++  P+      +  
Sbjct: 1038 AAEDFALLPEDDPGNSEPLAARLLRRCERAGRKEQAADVLQWLRAVVHQPLAPLGVSLAQ 1097

Query: 840  AMSCDS-YSEVSVSGK-------------------------INCPKKDIIISGRIDQISI 873
                D+   E+                              +   +   ++ G  D +  
Sbjct: 1098 LGEGDALLPEMEFWLPARRLSAPRIDALCRRHILAGQPRPVLPERELHGMLMGFADLVFH 1157

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYT 899
                 ++ +YKT+H       + P  
Sbjct: 1158 HGGRYWVLDYKTNHLGQDGAAYAPQA 1183


>gi|301310959|ref|ZP_07216888.1| UvrD/REP helicase domain protein [Bacteroides sp. 20_3]
 gi|300831022|gb|EFK61663.1| UvrD/REP helicase domain protein [Bacteroides sp. 20_3]
          Length = 1055

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 130/845 (15%), Positives = 259/845 (30%), Gaps = 121/845 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---R 163
                   +NT +       +L +   ++      +++  V+    LI +T +LL K    
Sbjct: 314  LFANLTAYNTAREIVRYYYTLGILTDISRQIASYREEKNVM----LIADTTELLNKVISG 369

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + +I  K    ++H +IDE QDTS +QW   R L E+         + R    VGD K
Sbjct: 370  SDAPFIYEKTGTHVDHYMIDEFQDTSGMQWNNFRPLVEESLA------NGRANLIVGDVK 423

Query: 224  QSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F  ++ K +    +R  +       ++     L  ++RS   I+   +  F+   
Sbjct: 424  QSIYRFRNSDWKLLDEQVRRDFE------EEQVREETLMDNWRSCRHIVEFNNGFFTTAP 477

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP---QQESWTSYFDSLPQE 339
                   +        +         ++             P   +       F S  +E
Sbjct: 478  AILQDLYNEALKTSSLNEEERTAFFTKIMTAYDKSIQRVPPPFQKKDGHVRIDFLSGDEE 537

Query: 340  SSASILA-RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  R+  T+  +                 KDI +LVR  ++  L+       K 
Sbjct: 538  KKWEQEAMERLPATLERLQDNGYAL----------KDIAILVRTNQEGALVADTLLAYKE 587

Query: 399  -----DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                  Y   ++ +D   +    A++ L+A+ R++ + ED  +            +    
Sbjct: 588  EHPSDRYNYDIISDDALFVGSSPAVRFLIAVLRYLRNPEDQTN---------RKLAMYAY 638

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
              +  +  E+E      Q   +        V + +    + + +    +           
Sbjct: 639  QVLTGKFGESEADKSVSQNLQSISRQSLYEVTEGL--FRNFSAYFPETEQV--------- 687

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                           +  FL+      Q   + L   +   ++       A     N +R
Sbjct: 688  --------------FVQAFLDMVSEYAQKESADLNRFLRWWDETGYRKTIATPDGQNAIR 733

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL---NDDPGIPIWIPQSKSRNN 630
            I+TVH +KGL   VV +     ++        +          D   +          + 
Sbjct: 734  ILTVHKSKGLGFKVVIIPFGDWEIDHKPTKPVILWCHPEKKPFDRLHLVPVRYGQILSST 793

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
            I +      +     +    LYV  TR+ ++LI+         K+        +    + 
Sbjct: 794  IFAKDYFKERLHAFIDNLNTLYVAFTRSKEELIVFSPRPRKINKEGKVEKITSIADLLWA 853

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              E   +             +   +    E  P                           
Sbjct: 854  GVETDIEDDTFERGEWWHPASGRTAEDTLEEIP--------------------------- 886

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
            ++  Y ++P           +    DN     G ++H++L  I           + SY  
Sbjct: 887  MSRLYSVSPDDRLQLRLHG-KGFFFDNARRKHGTLMHEVLSRI--RTPKDIPASVESY-- 941

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
            + A +   +E   L+  +  LL+   +       +   V     I   K    +S R D+
Sbjct: 942  RLAGVINREEAAELISRLEELLQAEEVKAWYDGSAR--VLNEVDILFGKG---LSKRPDR 996

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            + I    + + +YK         E     H  Q+  Y ++++     + +   L YV   
Sbjct: 997  VMIKDNKVIVVDYKFG-------ERQDKRHPNQVRNYLQLIRKMGFER-VDGYLWYVELG 1048

Query: 931  KVFII 935
            K+  +
Sbjct: 1049 KIEAV 1053


>gi|255015776|ref|ZP_05287902.1| ATP-dependent helicase [Bacteroides sp. 2_1_7]
 gi|298377090|ref|ZP_06987044.1| UvrD/REP helicase domain protein [Bacteroides sp. 3_1_19]
 gi|298266074|gb|EFI07733.1| UvrD/REP helicase domain protein [Bacteroides sp. 3_1_19]
          Length = 1055

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 130/845 (15%), Positives = 261/845 (30%), Gaps = 121/845 (14%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---R 163
                   +NT +       +L +   ++      +++  V+    LI +T +LL K    
Sbjct: 314  LFANLTAYNTAREIVRYYYTLGILTDISRQIAFYREEKNVM----LIADTTELLNKVISG 369

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + +I  K    ++H +IDE QDTS +QW   R L E+         + R    VGD K
Sbjct: 370  SDAPFIYEKTGTHVDHYMIDEFQDTSGMQWNNFRPLVEESLA------NGRANLIVGDVK 423

Query: 224  QSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F  ++ K +    +R  +       ++     L  ++RS   I+   +  F+   
Sbjct: 424  QSIYRFRNSDWKLLDEQVRRDFE------DEQVREDTLKDNWRSCRHIVEFNNAFFTAAP 477

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP---QQESWTSYFDSLPQE 339
                   +        S       + ++             P   +       F S  ++
Sbjct: 478  AILQDLYNEALKNSSLSEEERTAFSARIMAAYDDSSQRVPPPFQKKDGHVRIDFLSGDED 537

Query: 340  SSASILA-RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  R+  T+  +  +              KDI +LVR  ++  L+       K 
Sbjct: 538  KDWKQEAMERLPATLERLQDSGYAL----------KDIAILVRTNQEGALVADTLLAYKE 587

Query: 399  -----DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                  Y   ++ +D   +    A++ L+A+ R++ + ED  +            +    
Sbjct: 588  EHPSDRYNYDIISDDALFVGSSPAVRFLIAVLRYLRNPEDRTN---------RKLAMYAY 638

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
              +  +  E+E      Q   +        V + +    + + +    +           
Sbjct: 639  QVLTGKFGESEADESVFQNLQSISRQSLYEVTEGL--FRNFSAYFPETEQV--------- 687

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                           +  FL+      Q   + L   +   ++       A     N +R
Sbjct: 688  --------------FVQAFLDMVSEYAQKESADLNRFLRWWDETGYRKTIATPDGQNAIR 733

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL---NDDPGIPIWIPQSKSRNN 630
            I+TVH +KGL   VV +     ++        +          D   +          + 
Sbjct: 734  ILTVHKSKGLGFKVVIIPFGDWEIDHKPTKPVILWCHPEKKPFDRLHLVPVRYGQILSST 793

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
            I +      +     +    LYV  TR+ ++LI+         K+        +    + 
Sbjct: 794  IFAKDYFKERLHAFIDNLNTLYVAFTRSKEELIVFSPRPRKINKEGKVEKITSIADLLWA 853

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              E   +             +   +    E  P                           
Sbjct: 854  GVETDIEDDTFERGEWWHPASGRTAEDTLEEIP--------------------------- 886

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
            ++  Y ++P           +    DN     G ++H++L  I           + SY  
Sbjct: 887  MSRLYSVSPDDRLQLRLHG-KGFFFDNARRKHGTLMHEVLSRI--RTPKDIPASVESY-- 941

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
            + A +   +E   L+  +  LL+   +       +   V     I   K    +S R D+
Sbjct: 942  RLAGVINREEAAELISRLEELLQAEEVKAWYDGSAR--VLNEVDILFGKG---LSKRPDR 996

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            + I    + + +YK         E     H  Q+  Y ++++     + +   L YV   
Sbjct: 997  VIIKGGKVIVVDYKFG-------ERQDKRHPNQVRNYLQLIRKMGFER-VDGYLWYVELG 1048

Query: 931  KVFII 935
            K+  +
Sbjct: 1049 KIEAV 1053


>gi|313680112|ref|YP_004057851.1| ATP-dependent DNA helicase, rep family [Oceanithermus profundus DSM
           14977]
 gi|313152827|gb|ADR36678.1| ATP-dependent DNA helicase, Rep family [Oceanithermus profundus DSM
           14977]
          Length = 719

 Score =  238 bits (606), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 124/801 (15%), Positives = 245/801 (30%), Gaps = 137/801 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  ++++  + L   +V                 + ++   +   +  +     
Sbjct: 30  GAGSGKTRTVVHRVAYLLAEREVYPAEVLAVTFTNKAAGEMRERLSRMVGRAAGELWVST 89

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F   S   L +       +   +  + + +   LKE L     E      R    ++   
Sbjct: 90  FHSASLRILRRYGERIGLKPGFVVYDDDDQRVLLKEVLGSLGLEARPTYVRAVLDRIKNR 149

Query: 123 TLASLTLAK---------------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +                      + A Y++   +N  +DF DL++ T +L ++   + 
Sbjct: 150 MWSVDEFLAHADDWVGGLTKQQMAEVYARYQQRLAENNAVDFNDLLLRTIELFERHPEA- 208

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
                + Q    I +DE QDT+  Q+ + + L  D             L  VGD  QSIY
Sbjct: 209 --LEAVRQRARFIHVDEYQDTNPAQYRLTKLLAGD----------EANLMVVGDPDQSIY 256

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F  A+ + +L  +R  +           +  L  ++RSTA IL V + +    +     
Sbjct: 257 GFRNADIQNILGFERDYR--------GAVVYRLEANYRSTAAILRVANALIERNQQRLEK 308

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +                                    +        D   +       A 
Sbjct: 309 TLRPVKP----------------------------AGEPVRLYRAPDHREE-------AA 333

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  ++ + G   +            D  VL R    + ++    R L     +     
Sbjct: 334 FVAREVARLAGERAL-----------DDFAVLYRTNAQSRVLEEAFRRL----NLPARIV 378

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                 +   +KD++A  R  ++  DD++   ++  P        + K+    + +  ++
Sbjct: 379 GGVGFYERREVKDVLAYARLAVNPADDVALRRVINVPARGVGAASVGKLAAWAQAQGVSL 438

Query: 467 YEYIQK----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            E   +     A    +        +  L   A+   P  F  L+L      +       
Sbjct: 439 LEAAHRAGELLAARQAAAVAKFTDLLTTLREAAEGTGPEAFLRLVLAETGYSEMLRREGD 498

Query: 523 NE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
           +E  ++ L+E L      E+    S+ E + E+       +   +     V +MT+H AK
Sbjct: 499 SEPRLENLEELLRAAAEWEEEHGGSVAEFLDEIALTARAEEPNAAPEK-SVTLMTLHNAK 557

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE PVVF+V     +  H+                                        
Sbjct: 558 GLEFPVVFVVGVEEGLLPHRSSLGS----------------------------------D 583

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           +  EE  RLLYVG+TRA ++L +        E++        +    F  +     +K  
Sbjct: 584 AEIEEERRLLYVGITRAQERLYLTLS-----EERETWGQRERVRPSRFLEEIPEDFLKPV 638

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                    A    +  P N   +   +  +  ++ + P+     +     E        
Sbjct: 639 GPFGDAHEPAPAPLSSAPVNRAAKGSASGFRGGEKVRHPRYGEGTVVATSGEGAR--QEV 696

Query: 762 IDTKGKTNLESLLSDNQTFNR 782
                +  L+ LL       R
Sbjct: 697 TVHFAEAGLKRLLVKYAGLER 717


>gi|302684905|ref|XP_003032133.1| hypothetical protein SCHCODRAFT_55730 [Schizophyllum commune H4-8]
 gi|300105826|gb|EFI97230.1| hypothetical protein SCHCODRAFT_55730 [Schizophyllum commune H4-8]
          Length = 697

 Score =  238 bits (606), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 101/649 (15%), Positives = 194/649 (29%), Gaps = 131/649 (20%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +  R               +   + + YE + +++  +DF+DL++    L ++   + 
Sbjct: 158 DDLFRRQQNTSSEDPASEIERVVTQVYSDYEASLRQHNSMDFDDLLVFGVKLFREHRETV 217

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
                      HIL+DE QDT+  Q+E++R++              R +  VGD  QSIY
Sbjct: 218 QWC-------KHILVDEFQDTNTTQYELMRAIA-----------VNRCVTIVGDPDQSIY 259

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            +  AE   + + ++               I L  ++RST  IL+    + +  ++    
Sbjct: 260 GWRAAEVGNLAKMRKDF--------VLTEQILLEQNYRSTGHILSSSLAIVNEDKDRIQK 311

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           S  S+                                           L   SS    A 
Sbjct: 312 SLRSSHPNGKVPV-----------------------------------LRAFSSEQAEAA 336

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            IA  I  ++            V++  D ++L+R    +  I    +       I     
Sbjct: 337 FIATEIKRVVAN-------MGGVVRWCDFVILLRFNALSRPIEAALQ----KEGIPSRVL 385

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-- 465
                 + L IKDL+A  + I +     +F   +  P     +  + +I  +  +++   
Sbjct: 386 AGHKFFERLEIKDLLAYLQLIDNPHFFPAFARAVNVPSRGIGDKTLGEIAARAEKSKLSA 445

Query: 466 -------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQF 517
                                K +  + ++ EL   A   + P D    ++   +  +  
Sbjct: 446 LELVEKICDGRTPDIKPAIKMKLKRFVGHMRELREDATNGALPADLIRKLVDLTQYEEHL 505

Query: 518 IS--RFGNEVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQY--PPTIKRAHSANH 569
               +  +   + + E +NF    +        +    L   L+         +    + 
Sbjct: 506 KRTQQDADTRWENVKELINFATEEDVVVVDEGDADTTPLRKFLQASMLSSEGDKEQVDDK 565

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           N+V I T H AKGLE PVV +      +F                               
Sbjct: 566 NKVTISTCHAAKGLEWPVVMVPSVEQGIFPF----------------------------- 596

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVY 686
                     +     E  RLLYV  TRA   L +   +       +K      +   V 
Sbjct: 597 ---------YRTEDHAEERRLLYVACTRAQGLLYLTHAAKRKVNGEQKTKEVSPFLAAVT 647

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                    +    T    +             +  P +  E  +++ +
Sbjct: 648 KKNKVGSLRRDTIFTIKAPEFNAEDRRVLAKVLDRRPPDEAEVERRVAE 696


>gi|86156526|ref|YP_463311.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773037|gb|ABC79874.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 797

 Score =  238 bits (606), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 116/803 (14%), Positives = 226/803 (28%), Gaps = 139/803 (17%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E + + L PL     V   + + +  +             L  +      +++ 
Sbjct: 72  AAGEMRERLERLLGPLARELWVQTFHAFGARFLRREAAR-----AGLPPSFAIYDDDDQL 126

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            L+            + +  + +  +    K +  ++ +  +   D              
Sbjct: 127 RLVKRILAEVGLDEAEGLTPRRVLSQIDRWKNQALRAAEVKVAGLDPDAAR--------- 177

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              +K +   YE+A  +   +DF DL++    LL++    A +R +      ++L+DE Q
Sbjct: 178 ---SKEVYHRYEQALSRAGAVDFGDLLLRPVRLLEED---AALRARWAGRFRYLLVDEFQ 231

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q+ +++ LT             R +  VGD+ Q+IY + GA+   +L        
Sbjct: 232 DTNPVQYRLLQLLTG----------PRRNVCVVGDDDQAIYRWRGADVSNILGFDGDFP- 280

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +++L  ++RST  IL     V S     +                     
Sbjct: 281 -------GAKVVKLEQNYRSTRTILDAAHAVISRARRRREKRLW---------------- 317

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                +     D   +       A RIA  ++   G  T     
Sbjct: 318 ------------TESGAGAPLALLVGEDEGAE-------AERIARAVAAERGRGTSGD-- 356

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   +I VL R    +  +    R      +I  V        +   ++D  A  R
Sbjct: 357 --------EIAVLYRTNAQSRPLEAAMRA----ARIPYVIVRGTSFYERAEVRDAAAYLR 404

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGIS 479
             LS   DL    ++  P     E  + ++            E     + + +       
Sbjct: 405 LALSPASDLDLERVVNRPPRGIGEKTVERLRAHAAARGVPLVEAVAERDAVAELKPAARR 464

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFT 536
                   +  L               +L       +      +   E  + L E +   
Sbjct: 465 ALAEFHDLVTGLAADVPALDAGVAVQEVLKRSGMLSRLEEEHTDEAVERAENLAELVAAA 524

Query: 537 LRNEQN----------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
              +++                 L   LEQ     +   +     V +MT+H AKGLE  
Sbjct: 525 REFDESIAGEPPPGDPDEVRPPPLARFLEQIALLGEADAATPEGRVALMTLHAAKGLEFE 584

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VFL         ++                               +D     +  + +E
Sbjct: 585 AVFLAGMEDGTLPYERP----------------------------WADQTASERDESLDE 616

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YVGMTRA  +L +          +S     Y  +  S    +   ++       +
Sbjct: 617 ERRLCYVGMTRAKRRLTLSLARRRIGYGESGPS--YRNMEPSRFLRDLPPELFGDAVARE 674

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                   +        + R     +     ++                   P    T  
Sbjct: 675 VRAREAAQAAAVARPPTIRRLPGALEGEPHIELDGDDLPRAPASAPRARPAAPRGEPTVD 734

Query: 767 KTNLESLLSDNQTFNRG-LIIHK 788
            +  +   +    F+RG  + H 
Sbjct: 735 YSFDQRGDAGAAAFSRGERVAHA 757


>gi|193212683|ref|YP_001998636.1| exodeoxyribonuclease V subunit beta [Chlorobaculum parvum NCIB 8327]
 gi|193086160|gb|ACF11436.1| exodeoxyribonuclease V, beta subunit [Chlorobaculum parvum NCIB 8327]
          Length = 1199

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 131/995 (13%), Positives = 276/995 (27%), Gaps = 184/995 (18%)

Query: 17   YKDLWPLPYFQVSD-INKYVSLSMETGNPTILK---KAQTLQQASQTQCIEERFSLLSSF 72
             + +W      +S  +    SLS         K      +L +  + +     F      
Sbjct: 224  IRRIWRDEREAISTILRSDKSLSRSEKYYRDDKVEPLLSSLDEFIEERNPFALFDGFEK- 282

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
             LT          ++   +      E  ++ Q    +  +R    K          L  +
Sbjct: 283  -LTASGIAAGTKSSKASPE--HPFFEACERLQ---SEADERLLALKS--------ELVTF 328

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                  E KK+  +  F+DL+ +    L     +A +   +       LIDE QDT  +Q
Sbjct: 329  YRKRLPERKKEGNIRFFDDLLTDLYHALADGPEAATLAEALRTRYKAALIDEFQDTDPVQ 388

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            +++ R +                LF +GD KQ+IYSF GA+            +      
Sbjct: 389  YDIFRRIYATSDAP---------LFLIGDPKQAIYSFRGADIFAYFHAASDVGEE----- 434

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                   L  ++RST  +L   +++F             +  +           T +   
Sbjct: 435  ---RRFTLNTNWRSTPKLLDGFNRLFDHARQPFVFDGIPSPPLVAGRVIPESELTCKPPL 491

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            ++        +   +S  +       + +A   A  +A TI +                 
Sbjct: 492  ELCLLDGGDGDGSLKSGDA------TQFAADACASMVAETIRD--------------GAD 531

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            A  I V+VR  +   L+    R       I  V      +   +  +++  L   +    
Sbjct: 532  ASGIAVIVRTHRQARLMQATLR----KAGIVSVMRSDESVFTSVEAEEVRILVTALAEPG 587

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
             +      L +PLF  +  DI +                   N   ++ Q    Y     
Sbjct: 588  RETLVRAALVTPLFGLNGSDIAR--------------FNDDENALAARLQEFRDYHRLWR 633

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
                     +        +  R++ ++     G   +  +        R        ++ 
Sbjct: 634  ERGFMVMARELMRR----EGVRERLLATAEASGERALTNVLHCFELLHREAHARGLGMES 689

Query: 550  LISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            L++   +           +    ++   V+I+T H +KGL+ PVVF        F     
Sbjct: 690  LVAWFSERVATRETGEEYQIRLESDEPAVKIITAHVSKGLQYPVVFCP------FQFVRG 743

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                 +   +DD G  +    S      ++       + T  E  RL YV +TRA  + I
Sbjct: 744  GDKDDVVLCHDDAGRMVRDFGS----ASIAHHRTLAARETLAENLRLFYVALTRAEQRCI 799

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE--------------- 708
                      K           Y  + +D+  K          +                
Sbjct: 800  FFTARIVDGRKSGKPPQLTPASYLLYASDDARKSSDPVADATGELSVIGVNTMAGRLQVL 859

Query: 709  -------------WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL---------FSP 746
                          +  ++    P +   ER E + +   +                   
Sbjct: 860  ADESDGAIQVKRLTLGDDFRVSVPLSESTERPELVLREFRKILETDWRIASFTTLSRHKH 919

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESL--LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
            +  ++ +     PS                +  +    G+++H + + +  +        
Sbjct: 920  MAFELPDRDESAPSEPAAPLALPDAERSIFAFPKGAGAGILMHSIFETLDFVSASDADID 979

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGK-- 854
                   +   +  +    L   + ++L  P+        +        ++E+       
Sbjct: 980  EACATALDRYGFDEEWQPALTGMVRQVLATPLSSPNGLFTLGNLKKQAWFTELEFFFPLK 1039

Query: 855  -----------------------------INCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                                         ++      ++ G +D +  +Q   ++ ++K+
Sbjct: 1040 RITAPELAKLLVRHGIIPAGADPAATLQALDFAPVKGMLMGFMDMVFEAQGRFWLLDWKS 1099

Query: 886  HHHVPQEIEHIPY---------THIAQLSIYEKIL 911
            +H      E+             +  Q  +Y   L
Sbjct: 1100 NHLGNSVEEYRREQLDRAMQDNLYHLQYLLYTVAL 1134


>gi|288959583|ref|YP_003449924.1| uvrD/REP helicase [Azospirillum sp. B510]
 gi|288911891|dbj|BAI73380.1| uvrD/REP helicase [Azospirillum sp. B510]
          Length = 1054

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 135/963 (14%), Positives = 263/963 (27%), Gaps = 91/963 (9%)

Query: 2    KNRF-GLSLNESYELIYKDLWPLPYFQVSDINK----YVSLSMETGNPTILKKAQTLQQA 56
            + R  G++ ++      + L  L                +L+           A      
Sbjct: 153  RARLNGIAPDDLALSAERSLAGLFALLPPAAESGEPLDRALADAVSAAVAAIGAAGDTGV 212

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK-IRDRFN 115
             +T          ++     +  P    +             ++   ++     +R    
Sbjct: 213  KKTADALAVLKDAAALLDDGRPLPWAEWVRLGKIDAGKRWTAQVDPVREAAGAHLRHPRL 272

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
               +          A      Y   K+   ++DF D       L+++ +    +R ++ +
Sbjct: 273  RADLRALVDGVFRCAAEAMEAYGRFKRDRGLVDFVDQECEALALMERPE----LRARLAE 328

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             I   L+DE QDTS IQ  +   L              R    VGD KQ+IY F G +P 
Sbjct: 329  RIELALVDEFQDTSPIQLALFLRLARVV----------RRSVWVGDAKQAIYGFRGTDPA 378

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
             +        +             LP S+RS   ++   + +F       G++ D  T  
Sbjct: 379  LIDAVVATVPRA-----TAGVTERLPTSWRSRPGLVAFHNDLFGTAFPPLGIARDDATVG 433

Query: 296  R-HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
               R     Q   + LW       D           +                       
Sbjct: 434  GCARKDGADQPPPLALWTLGGKNWDQALAALARGVATVLAVPE----------------- 476

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                      +G  R I+ +DI +L RK +    +               V   R  L  
Sbjct: 477  AWPVGVRGDRDGLTRPIRGEDIAILCRKNERCATMARALAAAGLK-----VAVGRQGLVS 531

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                   +A  R+++   D L+ V +  +                  ++  + E+++  A
Sbjct: 532  TPEAGLALAALRYLVDPADTLAMVELAHADGDGGG------------QSSWLEEWLRPDA 579

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                 +    ++ +          +P +   + + A    ++          +  LD   
Sbjct: 580  ARRAREESEALRALDAARGRLLRLTPVEALEIAMMAGGVVERVKRWGDAAGRLANLDALR 639

Query: 534  NFTLRNEQN-----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                  E+        ++   LI  L        +  + +   VR+MT H AKGLE P+V
Sbjct: 640  GLARDYEEECRASRGAATAGGLIGFLSDVDKGGDQPPATDAAAVRVMTYHQAKGLEWPLV 699

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI------------ 636
              +D             +       D                                  
Sbjct: 700  IALDLQEGPDPSPFGLSVEGPADGVDPWNPLTGRWLRWWPWPYEKQRKGTGLDGPADASP 759

Query: 637  --KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                 +   Q E  RLLYVG+TRA D L++ +  + +    + +    + V       + 
Sbjct: 760  EMAAARAREQAEAVRLLYVGLTRARDYLVLAQARHGAAWLAAPRDADGEPVVRLPAAGDE 819

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
             +      +                 ++                    L           
Sbjct: 820  PELRVAAATHPVRLAAFEPPEETELRSSADPEASVFTLPPAAPVEHPPLRIVPSRWRPAA 879

Query: 755  YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKNFITSYCTKNA 813
               +P  +                    G  +H  L V    +P  +R         +  
Sbjct: 880  GAPSPVLLGETRLGERLPTPGGADITRLGEAMHGFLAVDRPEIPTARRLALAAGLLARWE 939

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873
                A         + RLL               EV V G++        +SGRID +  
Sbjct: 940  LPGMADALVEAGDRLWRLLA----ARWPGAGWRCEVPVQGRLGL----QRVSGRIDLLVD 991

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKV 932
            +     I ++K      +        H  QL++Y +++ ++   + +  C +      ++
Sbjct: 992  AGAGWVILDHKAFPGPHERWGERALEHAPQLALYARLVAEA-SGRPVLGCFIHMPVVGRL 1050

Query: 933  FII 935
              +
Sbjct: 1051 LEL 1053


>gi|120613110|ref|YP_972788.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120591574|gb|ABM35014.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
          Length = 689

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 102/624 (16%), Positives = 184/624 (29%), Gaps = 125/624 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YEE       +DF+DLI     LL+       +R K  Q + H+L+DE QDT+ 
Sbjct: 163 AVIMQRYEERLTAYQSVDFDDLIGMPLRLLRDFPE---VRAKWQQSLGHVLVDEYQDTNA 219

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  +               AVGD+ QSIY + GA    + +      +    
Sbjct: 220 TQYELLKLLVGE----------RGRFTAVGDDDQSIYGWRGATLDNLKKLPVDYPQ---- 265

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST+ IL   + V                                L
Sbjct: 266 ----LKVIKLEQNYRSTSAILRAANNVIQPNPK--------------------------L 295

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           + + +     +  P +              +    A R    I ++  T           
Sbjct: 296 FPKTLFSELGEGEPVRVV---------DADNEEHEAERAVARIQSLRATLNPQPA----- 341

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              K   +L R            R       +    +      D   IKDL A  R  ++
Sbjct: 342 --WKSFAILYRANHQAKPFEKALR----KANVPYKVSGGTSFFDRAEIKDLCAWFRLWIN 395

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF------ANCGISKFQH 483
            +DD +F+  + +P        + K+         +++  +                   
Sbjct: 396 NDDDPAFLRAITTPKRGIGHTTLAKLGEFSTQHKVSMFGALFNHMLEAVLPRKAHESVME 455

Query: 484 VIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLN 534
             +YI+ L + A+     +    F T  L      Q       +E         + EF +
Sbjct: 456 FGRYINYLEYKARHTHGAEDARTFMTDWLKEIGYEQYLYDSEDSETVAGARWTNVLEFCD 515

Query: 535 FTLRNE------------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
           +  +                   SL E+   +             + + V + T+H +KG
Sbjct: 516 WMSQRAGGQIDDTAGAVVAKETKSLLEVAQTIALLS--TISEREKDEDLVTLSTLHASKG 573

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE P V LV     +                               +      +      
Sbjct: 574 LEWPHVMLVGVTEGMLPF------------------------KLDDDEGRQQKVSEDTLQ 609

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             +E  RL+YVG+TRA   L +         ++         + +        K     +
Sbjct: 610 RLQEERRLMYVGITRAQRSLAVSWTKRRKKGREMVAAQPSRFIAEM----GLDKNTARED 665

Query: 703 SINKDEWIAYEWSTHHPENTPLER 726
              K   +  E++    +  P   
Sbjct: 666 PREKLRALRAEFAARKAQPAPTAP 689


>gi|86159793|ref|YP_466578.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776304|gb|ABC83141.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 671

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 106/674 (15%), Positives = 196/674 (29%), Gaps = 119/674 (17%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L    Q           +      +    K  + +           ++            
Sbjct: 91  LWLLQQEHEAAGLPRRFAICDAGDQLALVKRCMREVSVDDRKFDAHRVLSLVSRAKNAGK 150

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +          +A  +   YE+A +    +DF+DLI     +L        +R +
Sbjct: 151 KRIVPREAGQGDDYDLVAAEVYPRYEKALRAMRSVDFDDLIARPVAMLAHDPA---LRAR 207

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   ++L+DE QDT+  Q E+++ L+ +           R + AVGD+ Q+IY + GA
Sbjct: 208 CQERFRYLLVDEYQDTNAAQLELLKLLSGE----------RRNVCAVGDDDQAIYGWRGA 257

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E K +LR +R               + L  ++RST  IL   + V +     +  +  + 
Sbjct: 258 EVKNILRFERHFP--------GAKEVRLEQNYRSTGHILACANAVIAKNAARKPKALFTA 309

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G+   V                                     AR +A  
Sbjct: 310 DG-------PGEPVRVVAMP----------------------------EEEDEARFVAEE 334

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I+   G                   VL R    +       R       +    +     
Sbjct: 335 IARQRGEGRP----------WSHFAVLFRLNALSRPFEEAFRE----ASMPYRVHGGPAF 380

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471
            D   ++DL+A  +  +  EDD+S   ++  P     +  + ++          + E ++
Sbjct: 381 FDRSEVRDLLAYLKLCVQPEDDVSLSRIVNVPPRGIGDTSMERVHDWAIPRKLHLLEAMR 440

Query: 472 KFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----R 520
           + A           K    +  +       +     +    ++          +      
Sbjct: 441 RAAEIPDLPRGAAEKVGAFVALVDRFQARFREGPVSEAARALVAEVDLFSHVRAGVQSLE 500

Query: 521 FGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            G   +D L+  L       ++ +  SL   +  L                 + +MT+H 
Sbjct: 501 AGTRRVDALEGLLRSLDGYVQRTARPSLATWLQRLALDSREE--EDPDGEGGITLMTLHA 558

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFLV                                                
Sbjct: 559 AKGLEFPVVFLVGVEEDYLP----------------------------------CAGIQG 584

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +    +E  RL YVG+TRA ++L + + +  S   K   RT    + D            
Sbjct: 585 EARDLDEERRLAYVGITRARERLYLTRVAARSKRGKLLPRTPSRFLDDLPAGAHEQVDPA 644

Query: 700 LTNSINKDEWIAYE 713
              +  +D     E
Sbjct: 645 ALAAPPQDVAAHTE 658


>gi|312134286|ref|YP_004001624.1| uvrd/rep helicase [Caldicellulosiruptor owensensis OL]
 gi|311774337|gb|ADQ03824.1| UvrD/REP helicase [Caldicellulosiruptor owensensis OL]
          Length = 955

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 134/827 (16%), Positives = 276/827 (33%), Gaps = 107/827 (12%)

Query: 133 LNAHYEEAKKKNCV--LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           +  H  +      +  L ++ ++  T +LL   +V+  I          +++DE QD++ 
Sbjct: 173 IFEHLSDRLNDQFLKELTYDLVLQRTFELLSIPEVNKDI----KNRFKFLIVDEFQDSNF 228

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  +  ++ E              ++ VGD+KQSIY F GAEP+               
Sbjct: 229 LQKSIFENIAE-------------NIYYVGDKKQSIYRFQGAEPEVFDE----------A 265

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 + EL  +FR+ ++       +    +    +     T + ++    G +  V++
Sbjct: 266 VENCSQVSELCENFRTNSE-------LGKKIDKIAKILFPEYTMLSYKHQAEGFLKVVEI 318

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG--KK 368
                                   +  +E      A  +A  I  M+ +    S G   K
Sbjct: 319 V-----------------------NKAKEEIIQNEAIYVAKKIKEMVESGFEISVGGKPK 355

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           R ++  D  VL RK      I  + + +  DY + +  N +  L +   I  L+ L   +
Sbjct: 356 RKVKYSDFAVLSRK---IQNIAHIYKRVFEDYDVPLDINFKRGLLEQKEIVPLLGLLEIL 412

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
              +    ++ +L + +F      +            ++  + K           V+K+I
Sbjct: 413 QYPDKKSGYLRLLANDIFKVDRFTL------------LFCEMSKIECYVPE---DVLKFI 457

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            +           +         +   +    FG    + +  F +     E++   S++
Sbjct: 458 AKQRDNLFVKKISEILYEFEDMFEYSYKVYKFFGKGAYENVRLFYDLA---EESKSFSIE 514

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS--QVFSHKHIKKM 606
           +L S +           S + + V I ++H+AKGL  P+VFLV        F  +  K  
Sbjct: 515 DLCSFVNYQGERFSSFSSLDDSAVLI-SIHSAKGLSFPIVFLVGLCESTGYFPGRSPKLR 573

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-- 664
               +   +  I  +  +          +    K+  +EE  RL YV +TR    L +  
Sbjct: 574 GSYDTSTREYRIAPFWMEK-----EYERIKNISKQQEKEELKRLFYVAITRPMAGLFLIN 628

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                   ++   +    ++  +          I+      KD          + +   +
Sbjct: 629 SSLREAIKKRGGAKSFGEEVGLNYILAKVEEIGIEKEVVEIKDTEEDLSNDFTYKQKNTI 688

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN--- 781
                +  L DE +   K  SP      +      S     G    + L S  +      
Sbjct: 689 SSTLPLMILPDEFENRFKFLSPSHIMDFKRCPAMFSLKYIMGLPVFDELSSKEEIQQNTK 748

Query: 782 -RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
             G  +H++L+    L   K    + S           +  K +   I    E+  +   
Sbjct: 749 VLGTTVHRVLE----LTSLKDIQSLDSNIALAVLENDFESEKIVRELILNFFESQFVKEI 804

Query: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
                  E     +      + +I G ID++   +  + + ++KT+ H           +
Sbjct: 805 KDKVIKEES--ELRFYFNLGNQMIYGIIDKVYHLEDEVLLVDFKTNLHFDDTK---FNIY 859

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPK--VFIIPQNKLNKAFA 945
           I QL IY   +K+ +P K++   + ++ E +   + + +  L     
Sbjct: 860 IPQLFIYTMAMKERFPQKNIFSSIFWLREGRKFDYELKEEHLEDVMD 906


>gi|257052990|ref|YP_003130823.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691753|gb|ACV12090.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 959

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 127/859 (14%), Positives = 244/859 (28%), Gaps = 173/859 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT-NDL 159
            + ++ +  I DR+      +   A       +   Y +   +   L+F  L +     L
Sbjct: 234 DELREGYPSIDDRWAEEAFVEDREALTEFIHDVYVEYIQFAVRRNYLNFSFLQLFAFVQL 293

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            +   +   I          +++DE QDTS IQ+++   L                L  V
Sbjct: 294 CEDHALRESIA------FEQVMVDEFQDTSEIQFKLTLLLAG-----------TDNLCVV 336

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI----------IELPLSFRSTAD 269
           GD KQSIY F  A  + +   +R  +        +             I L  ++RST  
Sbjct: 337 GDWKQSIYGFQYAAVENIRSFERRLRAYKRELNGEHERVAFPIEEVTTIPLRRNYRSTQS 396

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL +                                 TV            +     E+ 
Sbjct: 397 ILDL----------------------------SRHALTVPATGSESVDRTVEDIDGLEAA 428

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTD--TIFSNGKKRVIQAKDILVLVRKRKDTP 387
           T    S     +++     I   I  ++G D   +  NG  R  +  DI VL R R+   
Sbjct: 429 TDRDHSTIAAFTSASEHEAILDRIETIVGNDDYAVDENGDLRTPRYDDIAVLTRTRR--- 485

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
                 +   +++ + V       L +      L+A  R +  ++    +  +L+     
Sbjct: 486 -FGRELQTTADEFGVPVAYEGGVKLFETDQAILLLAWLRILADEDSRRGWAVVLE--RAG 542

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           ++  ++ +I                  +            +  +       S       +
Sbjct: 543 YTLAEVEQILD---------------EHTYPDAMDAFRDRLAAM------ESIGAIARQV 581

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                    + S         L   L         +   +   I        T +   + 
Sbjct: 582 FERYGFEDAYASS--------LVALLQDVSDGTTRNLGGMIRFIERSLDAEATHEIDDNP 633

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + + + T+H AKGLE P+V + +     F         I                +  
Sbjct: 634 GGDSITVQTIHAAKGLEHPIVIVANINRYSFPPAGGGDDRIRFEDPIGLRQTKLSSTAHG 693

Query: 628 RNNIVSDLIKHLKK----STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
           + ++  +    +         +E  RLLYV MTRA D L+    +  S            
Sbjct: 694 QPHLYDNWRYRVLSACLGRDYDEERRLLYVAMTRAQDHLLFSAGAEPS------------ 741

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                                               EN PLE E     L + +    + 
Sbjct: 742 ---------------------------------PLFENLPLEPESVEPDLEESRIDRTEQ 768

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                +          S          E    D +    G  +H+  +        +  +
Sbjct: 769 TRLQVSIPEPDVPAGQSPHALMDDRVFE-DRDDGRGIEFGNRVHEFAEQYADGEAVEPAS 827

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                                   +   ++       +  + + E      ++  ++++ 
Sbjct: 828 DDER-------------------RVRDFIDE------LEGELHVEEDAYLPVSVGEQEVT 862

Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
           ISG ID + ++   + I +YKT      E E     +  QLS+Y  +++  YP++ +   
Sbjct: 863 ISGVIDLLHVTGDRVEIVDYKTDRTRDAETE-----YRKQLSVYYHVVRQLYPDREIEPS 917

Query: 924 LIYVSEPKVFIIPQNKLNK 942
           L Y  +  V  I    +  
Sbjct: 918 LFYSGKGTVVAIDPLSMES 936


>gi|158522126|ref|YP_001529996.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
 gi|158510952|gb|ABW67919.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
          Length = 616

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/564 (15%), Positives = 176/564 (31%), Gaps = 123/564 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                  YE   K+   +DF+++++   D+L+  D    +R +  +    IL+DE QDT+
Sbjct: 163 LADAYELYERMLKEKNAVDFDNILLCVRDILRDHDD---VRRRYQERFEFILVDEYQDTN 219

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q ++   L                LF VGD+ Q+IYSF G+  +  L  ++       
Sbjct: 220 NLQEDLTGLLC-----------RGDNLFCVGDDWQAIYSFRGSNMRHFLSFEQRY----- 263

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  + +L  ++RS   I+ V + +     +    +                 GTV+
Sbjct: 264 ---ADARVFKLEQNYRSADTIVRVANDIIDYNHDKMDKT----------CFSEESGGTVE 310

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           ++                          +       AR +A     +             
Sbjct: 311 IY--------------------------EFDDEVEEARWVARKAEELNEDG--------- 335

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +    + VL R +  +       R       I           D   + D+ +     +
Sbjct: 336 -VPYDAMAVLYRTKFTSLYFEHAFR----RAGIPYHLLGDRGFYDRKEVMDINSYLMAAV 390

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE------YIQKFANCGISKFQH 483
            ++DD +F  ++  P        +  I   R    ++          ++ ++        
Sbjct: 391 FEKDDTAFERIINIPRRGVGAKTLASINDMRTGAMSLQAAVHLALAERRLSDKVYQALSD 450

Query: 484 VIKYIHELIHIAQFCSPHDFFTLI--LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           ++  + ++  +    +  +    I  L   K      S    E ++ +D+ ++   R E 
Sbjct: 451 LMALLDDIRDMRPDAAIREVIERIGYLNYLKQYADAGSMDFTEKVENIDQLISAAARMES 510

Query: 542 NSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                   L + LE+       +        V + T+H AKGLE   VF+V     +  H
Sbjct: 511 --------LTAYLEEAALIREDKDDEEGGFGVNLATIHAAKGLEFHTVFVVGCEENLLPH 562

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  ++   +E  RL+YV  TRA+ 
Sbjct: 563 ----------------------------------WKSLEEEDDLQEERRLMYVAATRAAR 588

Query: 661 QLIICKHSNTSNEKKSNQRTWYDM 684
            L +        +     R  +++
Sbjct: 589 CLFLTAAGFRKGQFNRRSRFLFEI 612


>gi|84625870|ref|YP_453242.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
 gi|84369810|dbj|BAE70968.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
          Length = 1355

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 130/937 (13%), Positives = 255/937 (27%), Gaps = 112/937 (11%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK--LKKSQDEFI 108
            + L               L++    +        +    N+K  D      +    D ++
Sbjct: 306  EWLASLWHWFESFAAAPSLNTAPHAKLRKLTAAELAAGTNQKFVDRTPASPMSHEIDGYL 365

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                R   ++  +       L     A     K++  V  ++DL+      L+     A 
Sbjct: 366  TALARVQAWRSRRRIALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGAQADAL 425

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +  ++  +    L+DE QDT   QW +  ++  +  +          LF +GD KQ+IY 
Sbjct: 426  V-ARLRTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLAHAA-GLEPALFLIGDPKQAIYG 483

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F G + +  L            A        L  +FRS   +L  +D +++    +    
Sbjct: 484  FRGGDVRTYL----------AAAVTAEPAPPLSHNFRSRPGVLAAIDALYAQAGYSDAFL 533

Query: 289  EDSTTTIRHRSSRI----------GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
             D       ++                  + LW        S     +            
Sbjct: 534  TDGIAFHPVQAGTKRVDADLQRDGATAPALTLWRAPEPPPPSDAAAAKTKQAGKPKPWSA 593

Query: 339  ESSASILARRIAYTISNMIGTDTI-FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
              +  +        I   +       +    R +QA DI VLVR   +   I      + 
Sbjct: 594  GRARELATAACVAAIRGWLAGGRDGTATINARPVQAGDIAVLVRSHGEATRIQQALGAV- 652

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                I  V   +  L       +L+AL + +L   DD      L + L       I  + 
Sbjct: 653  ---GIPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAAL- 708

Query: 458  TQRHETETVYEYIQKFANCGISKFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                     +   Q+ A     ++Q    +  I +L               +L    G +
Sbjct: 709  ---ERDGERHRRWQQQALDWRERWQRGGPLALIGDLGATHG--------QRLLALVDGER 757

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---SANHNEV 572
            +  +         L E L          +  +  L+  +               ++   V
Sbjct: 758  RLTNYLQ------LAELLQEADARALGPHCLVDWLLRRIANADDNDDAQQLRLESDARRV 811

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +I+T+H +KGLE P+VFL   G         +   +    +               +   
Sbjct: 812  QIVTLHKSKGLEYPLVFLPYIGIGRSDKGAGRHCVVHAPDSGRQLHWKMD----RDDPTW 867

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
            S      K+  + E  RLLYVG+TRA   L I       +E+ +       +        
Sbjct: 868  SAAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGPFHQHERTALAGMLRALDALQGAAG 927

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            E    +  +        +        P     +R    +  +          +    D  
Sbjct: 928  EGAVVVDTSTPPAHLPRLPPPREAQVPPARNPQRHIAPEWWVYSFTQLANADAGAATDPM 987

Query: 753  EPYILNPS----------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP----- 797
                +  S           +     T+ E           G+++H + +           
Sbjct: 988  ASATVVGSGGSDEPSGSEAVAVAVGTDAEPFDPRFAGNRFGVVMHDVFERCDFAAWQVWR 1047

Query: 798  ---EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSY 846
                                 +   E  + L  +T L+ +          +         
Sbjct: 1048 PGQPAPDGQAAPILEALQRGGYAQDELDDGLAMLTALIGHTLTVALPEGRLADVPEPQRR 1107

Query: 847  SEVSVS---------------GKINCPKKDI----------IISGRIDQISISQQNIFIF 881
            +E+                   +                  +++G ID         ++ 
Sbjct: 1108 NEMEFHFAMRPTRVEALLALLHRFGVVGDRQAFGARQRLEGLMTGLIDLTYTVDGRWYVL 1167

Query: 882  EYKTHHHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
            +YK++     + + +        +  Q  IY   L  
Sbjct: 1168 DYKSNRLPSYDADALARAMAHSEYALQALIYTVALHR 1204


>gi|328947216|ref|YP_004364553.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
 gi|328447540|gb|AEB13256.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489]
          Length = 736

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 92/565 (16%), Positives = 166/565 (29%), Gaps = 133/565 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++  +K   +DF DLI+    +LK+ D+   IR         IL+DE QD+++ 
Sbjct: 169 EVYEKYQQRLRKTGNVDFGDLILLPYLILKENDL---IRKSFHARYKVILVDEYQDSNVA 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++++ L+          +S   +  VGD+ QSIY F GAE + +L  K          
Sbjct: 226 QFKLLQELSGV------NENSGTYVCVVGDDDQSIYKFRGAEIQNILNFKDEFP------ 273

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II L  ++RST++IL     V        G    S      + + +         
Sbjct: 274 --GTKIIRLETNYRSTSEILNCAGNVVKNNSGRLGKELVSARGKGKKPALVFLP------ 325

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                        S           I                 I
Sbjct: 326 -----------------------------SQDDETEFCYSLIEQAYEHG----------I 346

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    +          K    I           +   +KD+++   FI++Q
Sbjct: 347 PYSDWAILYRTNAQSLGFETEFLHKK----IPYEVVGSLKFYEREEVKDIISWLSFIVNQ 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI--- 488
            D++SF  ++  P+         KI         +        +    +     K +   
Sbjct: 403 RDEISFRRIVNKPVRGIGNTTQDKIIEASDGNSILNGAESLKLSKKAKEGFDFFKSLVEK 462

Query: 489 -----------------------HELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFG 522
                                     I  A      +F   ++      +         G
Sbjct: 463 FSDELPNVPVTSEAALLAGQAINENNIVFADEKKLSEFVEKVVKESGLEEFHKDQDEEIG 522

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAK 581
            + I+ L E +N  +     +   L + +  +        +       ++V ++T+H  K
Sbjct: 523 TQKIENLQELVNSAVLY-SCTKQGLLDFLDHINLDRTLKTESEEEKQEDKVTLITLHNTK 581

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   V +    S +F  +   +  +                                 
Sbjct: 582 GLEFKRVIITGMESGIFPREGKTESELEEERRL--------------------------- 614

Query: 642 STQEEYNRLLYVGMTRASDQLIICK 666
                     YVG+TRA D+L    
Sbjct: 615 ---------FYVGITRAKDELYFTS 630


>gi|239929060|ref|ZP_04686013.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 1114

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 132/1019 (12%), Positives = 281/1019 (27%), Gaps = 156/1019 (15%)

Query: 1    LKNRFGLSLNESYE----LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
            L++R  L +  +        +   + L             L + +G    +   + L   
Sbjct: 53   LRDRMALRMGAARAPRATTFHSFCYALIRAHQDSDLFVEPLRLLSGPEQDVTVRELLAG- 111

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                  +     L    +      +  + T+    +   +      ++   + +      
Sbjct: 112  ------QADLERLGLAHVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLDPEALN 160

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                +        A    A Y +      VLD+ +L+     L ++ + +     ++   
Sbjct: 161  AFARRIGRPDWRAASAFLAEYLDVLDLQGVLDYAELVHRAVLLARRPETAR----QLTAR 216

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             + + +DE QDT   Q  ++ +L              RTL A GD  QSIY+F GA+   
Sbjct: 217  YDAVYVDEYQDTDPAQVRLLHALAG----------GGRTLVAFGDPDQSIYAFRGADVNG 266

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +L      ++     G+   +  L  S RS A +L     V       +  +E       
Sbjct: 267  ILEFPYAFRR---ADGRPAPVGVLRTSRRSGAALLAATRLVTQRMPLPRLPAEKVRAHRE 323

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---ARRIAYTI 353
              ++R G  G V+++       +              D LP    A ++   +R +    
Sbjct: 324  LTAAREG--GRVEVYTYPTPGTELDNIADILRRAHLEDGLPWRDMAVLVRAGSRTLPAVR 381

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLV---------------RKRKDTPLITFLTRFLKN 398
              +             +    +  V                 R R    +          
Sbjct: 382  RALTSAGVPVDVDGDDLPLRHEPAVAPLLTALRAVATAAAEGRGRGAGTVPGAARTAADE 441

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRF------------------ILSQEDDLSFVCM 440
                +    DR             A                           D  +   +
Sbjct: 442  ATGEAAADEDRPGPGAEEDRPGAAAAEERPGPGAAEDRPGAGPGEGPEPCWLDTETARTL 501

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYE---------------YIQKFANCGISKFQHVI 485
            L SPL      D+ ++     E E                      +        +    
Sbjct: 502  LTSPLAGMDAADLRRLGRALREEERAAGNPLPPPSDELLARALAEPERLTVHDPAYARGA 561

Query: 486  KYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE------VIDVLDE--- 531
            + +  L+  A+       +  +    +       Q+                  LD    
Sbjct: 562  QRLGALLRKARERLAGGGTAEEALWDLWDGTPWPQRLERAARRGGAAGRNADRDLDAVCA 621

Query: 532  -FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             F       E+         + E+E            +   + VR+MT H +KGLE  +V
Sbjct: 622  LFATAARAEERTGGRGALNFLEEIEAEDIAADTLTRRAVRPDAVRLMTAHRSKGLEWSLV 681

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
             +      ++     +   +        G+   +                   +   E  
Sbjct: 682  VVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPG----------------ALLAEER 725

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM----------VYDSFHNDERVKKI 698
            RL YV  TRA ++L++      +++     R   ++                    V ++
Sbjct: 726  RLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGVEPRDVTGRPRRPLSVAALVAEL 785

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL-------FSPIKNDI 751
            + T    +        + H         ++  + L+      +               + 
Sbjct: 786  RATTVDPRASDALRRAAAHRLARLAALADDDGRPLVPAAHPYRWWGMFEPTESRVPLRNR 845

Query: 752  NEPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRGLIIHKLL-QVIFTLPEHKR 801
            ++P +L+ S ++       L+  L                G ++H L  +V         
Sbjct: 846  DQPVVLSGSALEQLAHTCALQWFLGREVKADAPATAAQGFGNVVHALADEVASGHTPADL 905

Query: 802  KNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
               +            +A    A+E +N  +++ R L+  +M  A       E      +
Sbjct: 906  DVLMERLDSVWNALAFDAPWKSAQEKENARVALERFLKWHVMDRAGRTPVAGEHDFDVTL 965

Query: 856  NCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                  + I G++D++        ++ ++KT    P   E        QL++Y+  +++
Sbjct: 966  EAGDYQVRIRGQMDRVETDGDGRAYVVDFKTGKQAPSSAEVAR---HPQLAVYQLAVRE 1021


>gi|323154796|gb|EFZ40990.1| exodeoxyribonuclease V, beta subunit [Escherichia coli EPECa14]
          Length = 1013

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 113/759 (14%), Positives = 247/759 (32%), Gaps = 88/759 (11%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 306  RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 364

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365  ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 416

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 417  QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 466

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
            A    E     ++                 +      +  P  + W    +S       S
Sbjct: 467  AFMFREIPFIPVKSAGKNQA----------LRFVFKGETQPAMKMWLMEGESCGVGDYQS 516

Query: 344  ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 517  TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 576

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 577  P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 633

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                     E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 634  D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 685

Query: 519  SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 686  DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 740  TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 786

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            ++  +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 787  VELAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 846

Query: 694  RVKKIKLTNSINKDEWIAYEWSTH------HPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  L   I         W T         +       E   + +          +  
Sbjct: 847  PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSY 906

Query: 748  ----------KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                        D+     ++ + + +  +    +     +  + G  +H L + +    
Sbjct: 907  SGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQ 966

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                 N++          + ++    L   IT +L+ P+
Sbjct: 967  PVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPL 1002


>gi|260881254|ref|ZP_05404011.2| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544]
 gi|260848967|gb|EEX68974.1| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544]
          Length = 745

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 115/677 (16%), Positives = 203/677 (29%), Gaps = 127/677 (18%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
               FL        +++ +   ++   L++       +  ++R        +K  +A   
Sbjct: 132 YPKSFLVLDNADIDDMLAKIYEERGLTLRDMTYGQARDMFEMRKLVQQPDYYKELIALP- 190

Query: 129 LAKYLNAHYEEAKKKNCVL--------------DFEDLIINTNDLLKKRDVSAWIRYKID 174
               L   Y+ A+ K  +L              D+ DLI  +  +  + +    IR K  
Sbjct: 191 -LASLKEKYDRAQSKQDILFYGYLYEEKKCFGLDYNDLIKFSLHIFAEHEA---IRKKWQ 246

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q + +I+IDE QD    Q+ ++  L              + LF VGD  Q+IY++ GA  
Sbjct: 247 QRLEYIMIDEFQDIDEPQYRLMNVLCGW----------HKNLFVVGDPDQTIYTWRGASG 296

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + +L                   I +  ++RST +IL+VV+ + +   +           
Sbjct: 297 RYLLDFDTHFP--------GTKTIFMLENYRSTPEILSVVNSLITKNTSRIEKDLVPVKE 348

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              +          +                                    A  +A  ++
Sbjct: 349 HGRKVVCHHAGAASE-----------------------------------EASWLAGEMA 373

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +              +  +++ VL R    T  I           +I            
Sbjct: 374 RLHAEG----------VAYREMTVLYRAHYITRSIEEQL----LKAEIPYTIYSGVQFFA 419

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKF 473
              IKD ++  R +    DDLS + ++  P  N  +     +         T YE +Q  
Sbjct: 420 RREIKDALSYLRLLA-YRDDLSLLRVVNVPKRNIGQRRRKFLTEYAEEHGLTFYEAMQAS 478

Query: 474 ANCGISK---FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
               I K    +  +K + +L  ++   S  +    +L          +      +D L 
Sbjct: 479 IEDPIWKGTQARAFLKLVDDLAEVSTGASVSEVLAEVLDRSGYEAMLRTEGSQARLDNLA 538

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           E        E +       L   L        +      ++VR+MTVHTAKGLE P VFL
Sbjct: 539 ELKQSVREYEVSCGEE-AGLTDYLAHAALFTNQDAGDPGDKVRLMTVHTAKGLEFPYVFL 597

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V     VF  +  +                                        EE  RL
Sbjct: 598 VALNEGVFPSRKTRTP-----------------------------------EAMEEERRL 622

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            +V MTRA   L +      + +      + + +  D    D      +      +D   
Sbjct: 623 AFVAMTRAEKGLYLSDAEGLNIDGSMRYPSRFILDIDPALLDFTAPLPERLVRAARDFVR 682

Query: 711 AYEWSTHHPENTPLERE 727
           A           P   E
Sbjct: 683 ASARRLSRQAEPPALHE 699


>gi|170739391|ref|YP_001768046.1| UvrD/REP helicase [Methylobacterium sp. 4-46]
 gi|168193665|gb|ACA15612.1| UvrD/REP helicase [Methylobacterium sp. 4-46]
          Length = 789

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 106/663 (15%), Positives = 195/663 (29%), Gaps = 116/663 (17%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A Y+E       +DF DL++    L ++      I         +IL+DE QDT++ 
Sbjct: 200 PLYAAYQERLATLNAVDFGDLLLLCLKLWRENPD---ILASYQDRFRYILVDEYQDTNVA 256

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +            R +  VGD+ QSIY + GAE   +LR +          
Sbjct: 257 QYLWLRLLAQ----------GRRNVCCVGDDDQSIYGWRGAEVDNILRFEHDFP------ 300

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     + +  E   G +                       
Sbjct: 301 --GAVVVRLERNYRSTGHILAAAATLIAHNEGRLGKTL---------------------- 336

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +  + T  +DS  +       AR I  TI  +   +   +       
Sbjct: 337 ------RTEAGAGEPVTVTGAWDSEEE-------ARLIGETIEGLQRQEHPLAQ------ 377

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               I VLVR       +      L     +           +   ++D +   R   + 
Sbjct: 378 ----IAVLVRTSAQMREVEDRFVQL----GLPYRVIGGPRFYERAEVRDALGYLRLTANG 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHV 484
            DDL+F  ++ +P     +  +  +    R     +    +      +      S  + +
Sbjct: 430 ADDLAFERIVNTPKRGLGDATLQALHGVARRRAVPLLHAARLIVETEELKPKPRSTLRAL 489

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           ++       + +     +   +IL      + +      +    L+         E+   
Sbjct: 490 VQCFDRWAKLLEGRPHAEVAQIILEESGYTEMWQKERTADAAGRLENLKELVRSLEE--- 546

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               +L + LE     +    +   + V +MT+H AKGLE   VFL      +F ++   
Sbjct: 547 --FPDLPAFLEHIALVMDANEAEGGDRVSLMTLHAAKGLEFDTVFLPGWEDGLFPNQR-- 602

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                          +    ++  EE  RL +VG+TRA  +  I
Sbjct: 603 ------------------------------ALDESGRAGLEEERRLAHVGLTRARKRAKI 632

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               N       +       + +       V +     S     +            TP 
Sbjct: 633 SFAVNRRIHGLWSSTMPSRFIDELPEASVSVIEAPANFSHGPSRFDRQATPFGSSYATPG 692

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
            +         E+   +      +          P  I+           SD     R  
Sbjct: 693 WQRAQAATAGQERFGGQGRPGEPRFGEGRGARGAPRQIEGTLVAKSTGTASDYVAGAR-- 750

Query: 785 IIH 787
           + H
Sbjct: 751 VFH 753


>gi|291437397|ref|ZP_06576787.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340292|gb|EFE67248.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 1126

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 132/1019 (12%), Positives = 281/1019 (27%), Gaps = 156/1019 (15%)

Query: 1    LKNRFGLSLNESYE----LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
            L++R  L +  +        +   + L             L + +G    +   + L   
Sbjct: 65   LRDRMALRMGAARAPRATTFHSFCYALIRAHQDSDLFVEPLRLLSGPEQDVTVRELLAG- 123

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                  +     L    +      +  + T+    +   +      ++   + +      
Sbjct: 124  ------QADLERLGLAHVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLDPEALN 172

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                +        A    A Y +      VLD+ +L+     L ++ + +     ++   
Sbjct: 173  AFARRIGRPDWRAASAFLAEYLDVLDLQGVLDYAELVHRAVLLARRPETAR----QLTAR 228

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             + + +DE QDT   Q  ++ +L              RTL A GD  QSIY+F GA+   
Sbjct: 229  YDAVYVDEYQDTDPAQVRLLHALAG----------GGRTLVAFGDPDQSIYAFRGADVNG 278

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +L      ++     G+   +  L  S RS A +L     V       +  +E       
Sbjct: 279  ILEFPYAFRR---ADGRPAPVGVLRTSRRSGAALLAATRLVTQRMPLPRLPAEKVRAHRE 335

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---ARRIAYTI 353
              ++R G  G V+++       +              D LP    A ++   +R +    
Sbjct: 336  LTAAREG--GRVEVYTYPTPGTELDNIADILRRAHLEDGLPWRDMAVLVRAGSRTLPAVR 393

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLV---------------RKRKDTPLITFLTRFLKN 398
              +             +    +  V                 R R    +          
Sbjct: 394  RALTSAGVPVDVDGDDLPLRHEPAVAPLLTALRAVATAAAEGRGRGAGTVPGAARTAADE 453

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRF------------------ILSQEDDLSFVCM 440
                +    DR             A                           D  +   +
Sbjct: 454  ATGEAAADEDRPGPGAEEDRPGAAAAEERPGPGAAEDRPGAGPGEGPEPCWLDTETARTL 513

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYE---------------YIQKFANCGISKFQHVI 485
            L SPL      D+ ++     E E                      +        +    
Sbjct: 514  LTSPLAGMDAADLRRLGRALREEERAAGNPLPPPSDELLARALAEPERLTVHDPAYARGA 573

Query: 486  KYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE------VIDVLDE--- 531
            + +  L+  A+       +  +    +       Q+                  LD    
Sbjct: 574  QRLGALLRKARERLAGGGTAEEALWDLWDGTPWPQRLERAARRGGAAGRNADRDLDAVCA 633

Query: 532  -FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             F       E+         + E+E            +   + VR+MT H +KGLE  +V
Sbjct: 634  LFATAARAEERTGGRGALNFLEEIEAEDIAADTLTRRAVRPDAVRLMTAHRSKGLEWSLV 693

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
             +      ++     +   +        G+   +                   +   E  
Sbjct: 694  VVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPG----------------ALLAEER 737

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM----------VYDSFHNDERVKKI 698
            RL YV  TRA ++L++      +++     R   ++                    V ++
Sbjct: 738  RLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGVEPRDVTGRPRRPLSVAALVAEL 797

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL-------FSPIKNDI 751
            + T    +        + H         ++  + L+      +               + 
Sbjct: 798  RATTVDPRASDALRRAAAHRLARLAALADDDGRPLVPAAHPYRWWGMFEPTESRVPLRNR 857

Query: 752  NEPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRGLIIHKLL-QVIFTLPEHKR 801
            ++P +L+ S ++       L+  L                G ++H L  +V         
Sbjct: 858  DQPVVLSGSALEQLAHTCALQWFLGREVKADAPATAAQGFGNVVHALADEVASGHTPADL 917

Query: 802  KNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
               +            +A    A+E +N  +++ R L+  +M  A       E      +
Sbjct: 918  DVLMERLDSVWNALAFDAPWKSAQEKENARVALERFLKWHVMDRAGRTPVAGEHDFDVTL 977

Query: 856  NCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                  + I G++D++        ++ ++KT    P   E        QL++Y+  +++
Sbjct: 978  EAGDYQVRIRGQMDRVETDGDGRAYVVDFKTGKQAPSSAEVAR---HPQLAVYQLAVRE 1033


>gi|167719901|ref|ZP_02403137.1| DNA helicase II [Burkholderia pseudomallei DM98]
          Length = 535

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 79/504 (15%), Positives = 165/504 (32%), Gaps = 78/504 (15%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I +++             +   ++ VL R    +  I            I+         
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTL----MTAGIAYRVYGGLRF 379

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQ 471
            +   +K  +A  R I +  DD +F  ++  P        I ++    R    ++   I 
Sbjct: 380 FERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLYDCSMAAAIP 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLD 530
             A    S        I ++       S  +    ++ A      +   R G + ++ L 
Sbjct: 440 YVAGKAGSSLASFANLIAKMRAETARMSLPETVEHVVRASGLADFYQGEREGQDRLENLQ 499

Query: 531 EFLNFTLRNEQNSYSSLQELISEL 554
           E +N            L      +
Sbjct: 500 ELVNAATAFVSEEGYGLDTPARSI 523


>gi|240949012|ref|ZP_04753366.1| exodeoxyribonuclease V beta chain [Actinobacillus minor NM305]
 gi|240296599|gb|EER47217.1| exodeoxyribonuclease V beta chain [Actinobacillus minor NM305]
          Length = 1202

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 127/867 (14%), Positives = 272/867 (31%), Gaps = 135/867 (15%)

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             L+L + +  H +    +     F+DL+   N  LK  +    +  +I  +    +IDE 
Sbjct: 349  LLSLREKIAEH-QAQYAERG---FDDLLKMLNQALKG-ERGEQLAAQIRAQFPFAMIDEF 403

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT   Q+++ R +        +  +  +    +GD KQSIY F GA+    L       
Sbjct: 404  QDTDKTQYDIFRQIF------MSEKAENQGFIMIGDPKQSIYKFRGADIFTYLEAAN--- 454

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                   Q      L  ++RS  +++  V+++FS                +H  +     
Sbjct: 455  -------QAKEKRTLSKNWRSFPEVVESVNQLFS--------------FPQHTEASPFLH 493

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---I 362
              +        + + Q    +           +E +A   A +I   +  M   +     
Sbjct: 494  QDIHFQPVSAKEFEFQLMGSEHVVCYLQTEFDEEQAAEHCATQIQLQLKAMQEKNFGVVG 553

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
             ++  K + QAKDI VLVR R    L+      L      SV  +++  +       DL 
Sbjct: 554  LNDSSKNIFQAKDIAVLVRSRNQASLVKN---ALAQRGVKSVFLSEKSSVYQSEVAYDLA 610

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             + +  L      + +  L S L+  +  +++++       E+V+E            +Q
Sbjct: 611  VILKACLHPYHQKTLLSALGSNLWGLTAFELYEL----KHDESVWENYVANFVAYQQLWQ 666

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                    ++ +      ++     L +++  ++ I+         L E L     + +N
Sbjct: 667  K-----QGVLAMLHQLFLNEGIIQRLKSRENAERLITDLF-----HLAELLQSGSHDVEN 716

Query: 543  SYSSLQELISELEQYPPTIKR--AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              + L+     LE             +  N V+I+T+H +KGL+ P+V+L   G   + +
Sbjct: 717  ETALLRWYERHLEDDEANDANTLRLESEENLVKIVTIHGSKGLQYPIVWLPFVGKNSYEN 776

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            ++                     +    N     + +   ++   E  RLLYV +TRA  
Sbjct: 777  RNGGLATYHDEE---------DQKKWDFNEKDERIQRLRNQAEFAEDLRLLYVALTRAEH 827

Query: 661  Q--LIICKHSNTSNEKKSNQRTWYDMVYDSFHND-----------------ERVKKIKLT 701
            Q  LI+  H            +  ++  D+                     E + +    
Sbjct: 828  QMNLILPAHFAKGWNAMHYLLSNGELALDNREEAAISTEDYIKAKNMPCKIENLPEQPRI 887

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK------------LFSPIKN 749
            +    +       S    E++  +RE  I          +             L + +  
Sbjct: 888  DDWRAEVDQQETLSVLPFEHSIPQREGQITSFTALYSYHEWKKQSKDHNEAGSLLTDLAQ 947

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
            D ++   +   T + +   +  +          G ++H+  +        ++   I    
Sbjct: 948  DYDQSVSVLNQTDELEQLDSALNAYHFPHGTKIGNMLHQFFEHYDFQQAVEKTEIIALCE 1007

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSG------------- 853
                     +        +           ++     +  +E                  
Sbjct: 1008 KLAIDEVWVEPVCQWFEKVRTTPFGEDLVSLSEVAKENRLNEWQFFLRLNNEDWVSELNH 1067

Query: 854  -------------KINCPKKDIIISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHI 896
                          +  P  +  + G ID I+  +   ++ +YK++           E++
Sbjct: 1068 LLKEHSELAKHLPPLKLPDLEGFVRGFIDCIAKVKGKFYVIDYKSNFLGYLPQDYSAENL 1127

Query: 897  PY-----THIAQLSIYEKILKDSYPNK 918
                    +  Q  +Y   +      +
Sbjct: 1128 AKTMGQYRYDLQYLLYTLAVHRYLKGR 1154


>gi|255994221|ref|ZP_05427356.1| putative ATP-dependent exoDNAse beta subunit [Eubacterium saphenum
           ATCC 49989]
 gi|255993889|gb|EEU03978.1| putative ATP-dependent exoDNAse beta subunit [Eubacterium saphenum
           ATCC 49989]
          Length = 1289

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 123/677 (18%), Positives = 228/677 (33%), Gaps = 76/677 (11%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
              +   K    + + K    +K+ L  S       ++     +          + K ++
Sbjct: 291 KNSYEEVKEECQKLVKKIKSIIKDDLLGSILTVPLEKEPELMKETEAHLTMFSKIIKAVD 350

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
               + K+K     F DL      +L   DV+A         I HI +DE QD++ +Q E
Sbjct: 351 RIGFKLKQKRNAYSFSDLEHLALKVLCMDDVAAI----YRDRIKHIFVDEYQDSNEMQEE 406

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++    +D             LF VGD KQSIY F  AEP      +   +         
Sbjct: 407 ILHKFAKD------------NLFLVGDVKQSIYRFRFAEPSL---FEGRYEAYL-GTSSS 450

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV-----Q 309
            SI++L  ++RS   ++  V+ +F           D    +         +G V     +
Sbjct: 451 GSIVDLKENYRSKQAVIDAVNALFKDVIP----KYDERHKLVAGRKDNDFIGEVKVCEAE 506

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKK 368
             +++ +  + +   + + +    D+L ++    +L   I   I   IG +   +  G +
Sbjct: 507 FNKEITNDDELKSKEEYKKYLKLIDTLGRDFYEGLL---IGSEIKAAIGREYFDAKEGVQ 563

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           + ++  DI VL R  K         +       I         + D   +  L  + +  
Sbjct: 564 KKLKFSDIAVLFRSIKG---RGKKIKLALELLGIPTNMQASGDILDFKEVNLLHCILKLT 620

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--------------------- 467
            +  DDLS V +L SP++ F+  DI +I     E                          
Sbjct: 621 ANFYDDLSLVTVLLSPVYGFTPQDIAEIRIWGDENGYKAQPFYACFLAFSKNLCRDDDAG 680

Query: 468 ---------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                    + ++        K +  +  I          S H F   +       + F 
Sbjct: 681 ENGETNGNGDALKNEDCELFVKARDFVNDILRFRSYGYALSLHVFIKRVCTETGIYE-FA 739

Query: 519 SRFGNEVI--DVLDEFLNFTLRNEQN-SYSSLQELISELE-----QYPPTIKRAHSANHN 570
                       ++ +++F    E+    ++L +L+  +E     +     +     N N
Sbjct: 740 EALKQSRNPCGNIERYIDFAHEFERERGIATLSDLLLYIEDLYKNELAIEQEEREGENTN 799

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V IMT+H +KGLE P+V +   GS  F              +      +         +
Sbjct: 800 AVSIMTIHRSKGLEFPMVVVAGCGS-NFVKTKSASYIEFDKNHGMFMRYMGADGLVGIPH 858

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                    K +  +E  R+ YV  TRA D L+    ++          ++YD++ D+  
Sbjct: 859 REILHKYAEKDAEYDEAMRIFYVACTRAKDFLVFSAVTDGKKGSIITYSSFYDVINDTLV 918

Query: 691 NDERVKKIKLTNSINKD 707
            +E + K K       D
Sbjct: 919 CNEEINKEKWFEYEEFD 935



 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/265 (10%), Positives = 63/265 (23%), Gaps = 69/265 (26%)

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-- 795
                       N+ NE   L  +  + +     +S   +    + G  +HKL + +    
Sbjct: 1026 DKKDGFSYFAGNEKNENDSLRINGENFRDMYVDKSQNDEPDPASIGTAVHKLFERLSFEK 1085

Query: 796  --LPEHKRKNFI----TSYCTKNAKLWPAKEY---KNLLLSITRLLENPMMTTAM--SCD 844
                       +             L   ++       +  +    ++  M   +  +  
Sbjct: 1086 MACAGEDEMTAMVLNELGCIKNEFSLSDDEQRYIENKKIHEVVTFFKDEFMQNIIRKAKS 1145

Query: 845  SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH------------------ 886
               E     + +   K  II G ID    S   I + +YKT+                  
Sbjct: 1146 IEKEKPFMMR-DDKLKGRIIEGVIDCFIESDDEIIVIDYKTNNIYGSYNNGENSEATDKN 1204

Query: 887  --------------------------HHVPQEIEHIP----------YTHIAQLSIYEKI 910
                                             + +             +  QL +Y++ 
Sbjct: 1205 LESSTEDFSIDNGCGSCASGQEKNTHRISETHEDKMAFGMRCIKKLIEYYGPQLKLYKRA 1264

Query: 911  LKDSYPNKSLVCLLIYVSEPKVFII 935
              +   +  +   + + +      I
Sbjct: 1265 -CELGYDIPVFAYIYFTNAKMFCEI 1288


>gi|229814925|ref|ZP_04445263.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM
            13280]
 gi|229809412|gb|EEP45176.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM
            13280]
          Length = 1179

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 146/1035 (14%), Positives = 272/1035 (26%), Gaps = 176/1035 (17%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G     S + + + L           +      +  G+          +Q          
Sbjct: 163  GFEAGTSAKRLVRTLLERASASRHGFDDMH---LIRGSVDFSGLMDAYRQCLGASAKAAE 219

Query: 66   FSLLSSFFLTQKF---TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-----TY 117
             + ++   L         + ++    +    P   +   K Q   +K             
Sbjct: 220  TARIALDALEAYGCGPQTRGDLAACMLACGMPRPSKAFPKEQVALLKAEAADAFINAYLA 279

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                +    L LA+ +   Y   K +   LD  DL+  T + L+       IR     + 
Sbjct: 280  LGGSALDELLALARAVGDEYAALKAERSALDNNDLLRLTYEALRDHP---RIRDAYAGKF 336

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              ++IDE QDT   Q ++I  LT +           R L  VGD +QSIY F GAE +  
Sbjct: 337  AMVMIDEFQDTDQQQVDLINFLTGE---------GGRALCTVGDAQQSIYRFRGAEVEVF 387

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
             R +R  ++ A   G + S+++L  +FRS A++L  V +VF   +               
Sbjct: 388  RRAQRRIEQGAAA-GSEGSVVKLVKNFRSHAEVLEYVARVFDDGQGGI------------ 434

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                      + L          +                 E   +  A  IA     + 
Sbjct: 435  ------MPSFLNLLPHDGRADGLRVAGASRRQALLVAGGTTEERTAAKAEAIAKRFRALA 488

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                           A D+++L+       +     R       +  V +   +      
Sbjct: 489  DAGQP----------AGDMVLLLGGMTRAGVYADAIRA----QGLDCVISGGSVFASTEE 534

Query: 418  IKDLMALGRFILSQEDDLSFVC-MLKSPLFNFSEDDIFKICTQ----------RHETETV 466
             K + AL   + +  D    +  +L SPLF     +   + T           R+    +
Sbjct: 535  AKTIRALVHMLGNLADTAQGLAPVLASPLFALGVQEFLALATAWDAQTGETRRRNIELGI 594

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV- 525
                       +         +   +              ++       +   R      
Sbjct: 595  LFDDDAPGFGDLPLLARARTVLRRALSRLGKDPLASIVRDVVNESGWMVRLAERGAEGRA 654

Query: 526  -IDVLDEFLNFTLRNEQN---SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                + + ++     E     +   +                 +    N VRIMTVH +K
Sbjct: 655  QAANVLKAIDAVAEAEAELGNAPRQVALAYDRFLTGKQAPGALNEEGGNAVRIMTVHASK 714

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN----------- 630
            GLE PVV + +      +   ++ +       D   +P   P  +               
Sbjct: 715  GLEFPVVAVSECFGIRSNSARMQSVRRDDGTLDLVALPGRFPDCRDSLGSLIEGAEVEKQ 774

Query: 631  -------------------------------IVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                               +     +   EE  RLLYV MTRA 
Sbjct: 775  FKRYLSGSGATGPWLDASLVDDVCATGSAAEAWLSMRDEEDRLALEERARLLYVAMTRAR 834

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDM----------------------------------- 684
            +  ++   +     K S      ++                                   
Sbjct: 835  EVCLLAMDAPVGRGKGSALALKPELDLTPAVLERILPDAGASLACDRLVFDNAQAGDFEL 894

Query: 685  ------------------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                              + D+      V   +  +S    E           E  P + 
Sbjct: 895  IALRDFSYGGVVYEANAALADAEDPVADVPVSEPMDSFTLVEPANVYMRVVPAERAPRDS 954

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPY-ILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
                    +  +  +    P +  I         S      +        +      G  
Sbjct: 955  YSYSSVSAELHEEAEDHPEPTEAPIEGASGEAAVSGGVEAPRDERAVPSHEGDPTALGSA 1014

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-CD 844
             H   Q +  L          +          A + +    ++ R L + +   A++   
Sbjct: 1015 FHAACQWLIELDRADLP-VERADALCRYWGCTAAQRERFDEAVARWLSSDVRAEALAWPC 1073

Query: 845  SYSEVSV-SGKINCPKKDI--IISGRIDQISIS---QQNIFIFEYKTHHHVPQEIEHIPY 898
              +EV   S  ++   +       G ID +           + +YKT     +  E +  
Sbjct: 1074 RRAEVPFYSLGMDGLVERFGPYAEGAIDLLCTDAARPGRALLIDYKTGGSSLETPEQLQE 1133

Query: 899  THIAQLSIYEKILKD 913
             H  Q S+Y  +L  
Sbjct: 1134 KHALQASVYADVLHK 1148


>gi|210623565|ref|ZP_03293891.1| hypothetical protein CLOHIR_01841 [Clostridium hiranonis DSM 13275]
 gi|210153435|gb|EEA84441.1| hypothetical protein CLOHIR_01841 [Clostridium hiranonis DSM 13275]
          Length = 630

 Score =  237 bits (604), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 102/631 (16%), Positives = 213/631 (33%), Gaps = 117/631 (18%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIIT--QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
             F  L    +      +  I    + +  ++ D  + + +   E   I++       F 
Sbjct: 96  RYFENLQLKSIVDDKEKRYAIKNIIKNLKIENTDDDDTITQIMTEISYIKNELMNPSDFN 155

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
           S + +      + + YE  K+    +DF+D++I T  +LK+          +     +IL
Sbjct: 156 SDVLTRDDFTRVYSMYEGYKENVRKIDFDDMLIRTYYMLKEYPNR---LDFVRNVYKYIL 212

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD + +Q+E+IR +           +    +FAVGDE QSIY F GA P  +L  +
Sbjct: 213 IDEFQDINRVQFEIIRMIA----------NPLNNIFAVGDEDQSIYGFRGARPDFLLEFE 262

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +               I L +++RS  +I+ + + +     N    +             
Sbjct: 263 KYF--------GGTEKIFLDVNYRSKKEIIDISNSLIKNNLNRFEKT------------- 301

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                             +        +   +D   +       A  IA  I   +  + 
Sbjct: 302 ---------------IKCASGEGASVRYIEPYDPEEE-------ATFIAKEIQKKVQEND 339

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKD 420
                     +  +  V+ R    +  +  +      + +I     D  + +  H AI D
Sbjct: 340 D---------EYSEYAVIYRTNIQSRALVDVF----MNMRIPFSVKDSVVTIYSHWAICD 386

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           +++  +  L    ++ +  ++  PL    +  I K    ++    +              
Sbjct: 387 IISYLKLALDPNRNMDWERIINRPLRYIPKVAISKAKASKNFIGCLMSECDLKKIQI--- 443

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV------IDVLDEFLN 534
               ++ +   +   +   P    + I       +  +    N        I++++EF +
Sbjct: 444 --RTLEELDIDMGYIKTLQPKYAISYIRSTLDYDRYILDYCQNRKIKPAGIIEIMNEFES 501

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             +        +++E +  +E      +    ++  + V   T+H+AKGLE   V+++  
Sbjct: 502 SAVNF-----KTIKEFLDHIEMIKKKAEENTLNSQQDGVIFTTMHSAKGLEFENVYVIGA 556

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +  H+    +                                 K+S  EE  RL+YV
Sbjct: 557 SEGISPHEKTCDIEDDD----------------------------KKESQIEEERRLMYV 588

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
            +TRA + + I    N  ++K    R   +M
Sbjct: 589 AVTRAKNNVCISSPKNRYSKKIQVSRFVKEM 619


>gi|182436135|ref|YP_001823854.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
            griseus NBRC 13350]
 gi|178464651|dbj|BAG19171.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
            griseus NBRC 13350]
          Length = 1184

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 133/1034 (12%), Positives = 285/1034 (27%), Gaps = 162/1034 (15%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +  E  + +   L      Q +  + +    +       L  A  L+  S  +       
Sbjct: 92   AAVELRDRMAARLGAARGPQATTFHSFCYALVRAHQDADL-FADPLRLLSGPEQDVTVRE 150

Query: 68   LLSS-FFLTQKF--------TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            LL+    L +            +  + T+    +   +      ++   + +        
Sbjct: 151  LLAGQLDLEKAGLAHVRWPDELRSCLTTRGFADEVRAVL-----ARSRELGLGPDALAAF 205

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              ++     + A    A Y +      VLD+ +L+     L ++ +    +  ++    +
Sbjct: 206  ARRTGRPDWSAAAQFLAEYLDILDAQGVLDYAELVHRAVLLAERPE----VAERLAGSYD 261

Query: 179  HILIDEVQDTSLIQWEVIRSLTED--------------------------------FFVG 206
             + +DE QDT   Q  ++ +L  +                                    
Sbjct: 262  AVYVDEYQDTDPAQVRLLHALAGNRGRTPEYTRGRGEEGRGDGGRGDGGRGEEARAGGAR 321

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                   RTL A GD  QSIY+F GA+   +L      ++     G    +  L  S RS
Sbjct: 322  SEAARGGRTLIAFGDPDQSIYTFRGADVNGILDFPDAFRR---ADGDPAPVGVLTTSRRS 378

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             A +L     +       +  ++         + R G  G V+ +    +  + +     
Sbjct: 379  GAGLLAATRLLTRRMPLTRLPADMVRAHRDPAAVRDG--GRVETYTYPTASTELENIADL 436

Query: 327  ESWTSYFDSLPQESSASIL---ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                   D +P +  A ++    R +      +             +    +  V     
Sbjct: 437  LRRAHLEDGVPWQEMAVLVRAGGRSLPAVRRALTSAGVPLEVDGDDLPLRHEPAVAPLLT 496

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFI------------------LTDHLAIKDLMALG 425
                + T   R L +  +    G  R                      D          G
Sbjct: 497  ALRTVATAALRGLLDGDRDETDGAGRDEADGADPGETAGADQGDTAGADPGETAGAGRAG 556

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE---------------YI 470
                S  D  + + +L SPL +    D+ ++     + E                     
Sbjct: 557  ARTSSWLDTETALTLLTSPLGSMDAADLRRLGRALRDEERAAGIRVPAPSDELLARALAE 616

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISR----- 520
             +        + H  + +  L+  A+       +  +    +        +         
Sbjct: 617  PERLVTHDPAYAHGAQRLGALLRKARELLEGGGTAEEALWALWNGTPWPGRLERAALRGG 676

Query: 521  -FGNEVIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVR 573
              G      LD     F       E+         + E++            +A  + VR
Sbjct: 677  AGGRNADRDLDAVCALFETAARAEERTGGRGALNFLEEVDAQDIAADTLSRRTARPDAVR 736

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            +MT H +KGLE  +V +      ++     +   +        G+   +           
Sbjct: 737  LMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPG-------- 788

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM--------- 684
                    +   E  RL YV  TRA D+L++      +++     R   ++         
Sbjct: 789  --------ALLAEERRLFYVAATRARDRLVVTAVKAPADDGDQPSRFLTELGVEPRDVTG 840

Query: 685  ---VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
                  +        +    +    +                 + E              
Sbjct: 841  RPRRPLAVAALVAELRATTVDPAASEALREAAAHRLARLAALTDDEGQPLVPAAHPYRWW 900

Query: 742  KLFSPIK-----NDINEPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRGLIIH 787
             L  P +      D ++P  L+ S +D       L+  L                G ++H
Sbjct: 901  GLEEPTRSAVPLRDRDQPVTLSGSALDQLANTCALQWFLGREVKADAPATAAQGFGNVVH 960

Query: 788  KLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
             L  +V  +         +            +A     +E      ++ R L   ++   
Sbjct: 961  VLADEVASSRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQARAALERFLHWHVLDRG 1020

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYT 899
                + SE      +   +  + I G +D++    +   ++ ++KT    P + E     
Sbjct: 1021 GRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEQDAEGRAYVVDFKTGKGAPTKDEVAT-- 1078

Query: 900  HIAQLSIYEKILKD 913
               QL++Y+  +++
Sbjct: 1079 -HPQLAVYQLAVRE 1091


>gi|68249990|ref|YP_249102.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 86-028NP]
 gi|68058189|gb|AAX88442.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 86-028NP]
          Length = 1211

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 151/982 (15%), Positives = 299/982 (30%), Gaps = 148/982 (15%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248  ESADEILAIITNELEKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
             +FL           T +   K P                 ++     M    L+ LTL 
Sbjct: 308  DYFLQSSIEKNCEESTDKNKDKKPA-----TPFYSPIFAELEKRVNALMTPDLLSKLTLY 362

Query: 131  KYLNAHYEEAKKKNCVLD---------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                 HY +  ++  +LD         F+DL+    + L+       +   I  +    +
Sbjct: 363  -----HYRQGLQQK-LLDYKLNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAM 415

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   Q+ +   +  D                +GD KQ+IY F GA+    L+  
Sbjct: 416  IDEFQDTDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKAS 469

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               Q R            L  ++RS   ++  V+ +F  P++         T +  R   
Sbjct: 470  DEAQSRFE----------LTKNYRSEKHLVDGVNALFDFPQSPFIYQNIKFTAVDSR--- 516

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                      + +    + +  P    + +  D + +   A I A  I + + +      
Sbjct: 517  ---------DDHLRFYLNGKAEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAAENQA 567

Query: 362  IFSNGKKRV-IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +F N   R  +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+
Sbjct: 568  VFQNEDTRKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKE 624

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L  + +  L+   +   +  + + LF  +  DI +I           E   +      ++
Sbjct: 625  LAWVLKACLNVA-ERPILNAIATALFGLNAADIHQIQQN--------EADWQRWADSFAQ 675

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +Q   +    L  + Q          +L    G +             L E L       
Sbjct: 676  YQQTWQRQGILAMLHQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATLH 729

Query: 541  QNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++  + L     +++ +     +    +    V+I+T+H +KGLE  +V+L         
Sbjct: 730  ESESALLSWFEKQIQGEGRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLA----- 784

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                  +        D  I     + ++  +I +  +  L + T  E  RLLYV +TRA 
Sbjct: 785  ------VPSKDPSKKDINIYYSKERDETLWDIENRNLNALCEETFAEELRLLYVALTRAK 838

Query: 660  DQ---------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             Q               L          ++ +   +           ++    +++    
Sbjct: 839  YQMAFALPAQFDKKWNALHYVLSQGEIGKEINLSNSKDTETLLQAFKEKMRDNVEICTKP 898

Query: 705  NKDEWIAYEWSTHHPENTPLE---------------REETIKQLMDEQKIPKKLFSPIKN 749
            N + + A   +T + E    E                 E   +  +      +    + +
Sbjct: 899  NLEAFPALSINTKNDELKAAEFTGNIEQDWRITSFTSIEQGHRRQNYFAESAEKKHAVFD 958

Query: 750  DINEPYILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            D  +    N   I T      ES  L   +    G  +H+  +  +       +      
Sbjct: 959  DAKDYDSQNAIEISTALLNENESNILDLPRGKQVGTALHRHFENCYFSDLANIEEIDKLR 1018

Query: 809  CTKNAKLWPAKEYKNLLLSITRL-LENP---MMTTAMSCDSYSEVSV------------- 851
             +        +  +N L  I+   L +     +    + D   E+               
Sbjct: 1019 QSLQLDETFTEPLQNWLQQISHTPLSHEIGIALADLANKDCIKEMPFYLAIWEHFDVEEF 1078

Query: 852  -----------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ--------- 891
                       S  +   +   ++ G ID +       ++ +YK++              
Sbjct: 1079 NRTLKAHHHLPSEPLQFEQIQGMVRGSIDLVFRHNGKYYLIDYKSNFLGSTLADYNQEAL 1138

Query: 892  EIEHIPYTHIAQLSIYEKILKD 913
            + E +   +  Q  IY   L  
Sbjct: 1139 KKEMLHSHYDWQYLIYTLALHR 1160


>gi|207723734|ref|YP_002254132.1| dna helicase II (partial sequence) protein [Ralstonia solanacearum
           MolK2]
 gi|206588938|emb|CAQ35900.1| probable dna helicase II (partial sequence) protein [Ralstonia
           solanacearum MolK2]
          Length = 807

 Score =  237 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 99/661 (14%), Positives = 181/661 (27%), Gaps = 145/661 (21%)

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           IR    +   HIL+DE QDT+ +Q+  ++ L      G      P  +FAVGD+ QSIY+
Sbjct: 219 IRAHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEPGVA----PNAIFAVGDDDQSIYA 274

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F GA    ++  +R  +            I+L  ++RS  +IL   + + +      G +
Sbjct: 275 FRGANVGNMVDFEREFRVE--------HRIKLEQNYRSHGNILDTANHLIAHNTRRLGKN 326

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             +              G  +L     S  D                          A  
Sbjct: 327 LRT------------DAGHGELVRVYQSATDG-----------------------QEAGW 351

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I + I + T             +I +L R    + +I            I      
Sbjct: 352 IVDEIRDRIASGTA----------RSEIAILYRSNAQSRVIEHSL----FSVGIPYKVYG 397

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVY 467
                +   IK  +A  + + + ++D +F  ++  P        +  +         ++ 
Sbjct: 398 GLRFFERAEIKHALAYLQLLENVDNDAAFGRVVNFPARGVGARSLELLQDAAKLYGASLA 457

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVI 526
             +        +K    ++ I ++    +  +  +    ++ A      +     G + I
Sbjct: 458 ASVPYLTGAAGTKLTAFVRLIEQMRADTRQMTLPEIVQHVIRASGLITHYQGEKEGLDRI 517

Query: 527 DVLDEFLNFTLRNEQNS---------------------------------------YSSL 547
           + L E +                                                    +
Sbjct: 518 ENLQELVTAAQAFVAEEGYGADAIATALPVRHDAMLRIEGGETDGDVVAELVAGEAPMEM 577

Query: 548 QELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
             L++ L             A  + V++MTVH AKGLE  VVF+      +F H++    
Sbjct: 578 TPLVAFLTHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFHVVFITGLEEGLFPHENSL-- 635

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC- 665
                                                 EE  RL+YV +TRA ++L +  
Sbjct: 636 --------------------------------QDTDGLEEERRLMYVAITRARERLYLSF 663

Query: 666 -------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                           +         +             +       D     +W    
Sbjct: 664 AQSRVLHGQIRYHIRSRFFDELPEAPLKWLTPQHAGYSPTRRAQGAQGDSAWGRDWFKRP 723

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                          MD  K         +        +  S       T LE   +D +
Sbjct: 724 ERGDDEAYTGRPTGGMDTGKNYADAKRAAETGFRVGQSVFHSKFGEGVITTLEGEGTDAR 783

Query: 779 T 779
            
Sbjct: 784 A 784


>gi|319788484|ref|YP_004147959.1| ATP-dependent DNA helicase Rep [Pseudoxanthomonas suwonensis 11-1]
 gi|317466996|gb|ADV28728.1| ATP-dependent DNA helicase Rep [Pseudoxanthomonas suwonensis 11-1]
          Length = 657

 Score =  237 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 94/667 (14%), Positives = 208/667 (31%), Gaps = 126/667 (18%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+               S F         K+++         D++  + ++++  + 
Sbjct: 85  ALGLKFLQIEHEAAGLKRGFSIFDADDAAAQVKDLMPGAKPDAVEDVRNLISRAKNAGLS 144

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                   +  +        A  L A Y+   +    +DF+DLI     +L+  +    +
Sbjct: 145 PEQALAVARSTREME-----AAKLYARYQARLQTFNAVDFDDLIRLPLQILESNED---V 196

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                + I ++L+DE QDT+  Q+ ++R++                   VGD+ QSIY++
Sbjct: 197 VRAWRERIGYLLVDECQDTNDAQYRLLRAIAG----------PAGNFTCVGDDDQSIYAW 246

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA P+ + +  +              +I+L  ++R +  +L   + + +   +    + 
Sbjct: 247 RGANPENLDQMGQDYP--------DLQVIKLEQNYRCSNRVLRAANALIARNPHKHLKTL 298

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S                +++W                          +       A ++
Sbjct: 299 WSDQ---------ADGERIRVW--------------------------ECRDNEHEAEKV 323

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I+ +            R +   +  +L R    +  +    + L+    +       
Sbjct: 324 AGEIAFLHEA---------RQVPWNEFCILFRSNHQSRPLEKALQLLR----VPYHLTGG 370

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------E 462
               +   +KD ++  R I + +DD +F+  ++SP        + ++             
Sbjct: 371 TAFLERQEVKDALSWLRVIANPDDDAAFLRAVQSPKREVGATSLARLAELAASRNMPLSR 430

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                  +Q+      +        I +L   A   S  D    +        +  ++  
Sbjct: 431 AAQSMGALQQLPPRAANGLGAFNDAIDDLRDNATKMSAADLVRRLAEKSGLLTELRAQCK 490

Query: 523 NE-----VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
           +E         LDE        E     +    ++   Q     +       N+VR+M++
Sbjct: 491 DEASFQRRKANLDEL---AEWFEGGPRGATAGDLA--AQLALLSRNDKDDGGNQVRLMSL 545

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE   VF++        H                                     
Sbjct: 546 HAAKGLEFGYVFIIGCEDGTLPHD-----------------------------------A 570

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
            +++ + EE  RL+YVG+TRA  +L +     T   ++  +      + +   ++ +   
Sbjct: 571 AMEEGSLEEERRLMYVGITRAKKRLWLSYSRETRRFREKVRLKPSRFIDELPASELQRDG 630

Query: 698 IKLTNSI 704
                  
Sbjct: 631 ADPVADA 637


>gi|296270933|ref|YP_003653565.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296093720|gb|ADG89672.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 1074

 Score =  237 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 133/977 (13%), Positives = 276/977 (28%), Gaps = 145/977 (14%)

Query: 8   SLNESYELIYKDLWPLPYFQVS-DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   L       ++   + Y    +        +    L  A +      R 
Sbjct: 78  AAEELRERITARLQRTTRSPLAFTFHGYAYALLRRAAVLRGEPPPRLLTAPERLLEIRRL 137

Query: 67  SLLSSFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             L              +    +    + +L + L ++ +  +         +  +    
Sbjct: 138 --LQGELEDGARHWPAEMRELLKTRGFAQELLDFLSRAAERGLDGDALVRLGR--ERGRP 193

Query: 126 SLTLAKYLNAHYEEAKKKNCV--LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               A      Y +    + V  +D+ +LI     LL         R +     + +L+D
Sbjct: 194 DWEAAGRFFNRYHDRFDVDPVPTIDYPELIRTAAGLL----RDEAARRRERDAYDAVLVD 249

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT   Q  +++ L  D           R L  VGD  QSIY F GA+P  ++R    
Sbjct: 250 EYQDTDPAQELLLQQLAGD----------GRELIVVGDPDQSIYGFRGADPGAIMRFPER 299

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
            + R    G+   ++ L    R    +L           + +  +          +    
Sbjct: 300 FRTR---DGRPAPVVALRECRRFGEALLAA---------SRRVAARLPAAPAPTVAPAGD 347

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
             G   L                       +        +  A + A  +++++    + 
Sbjct: 348 PGGHRDLVPA-----------------DGLEPGEVRVLIAGSASQEAAVVADVLRRAHLI 390

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFILTDHLAIKDLM 422
                  +  + + VLVR          L R   +   + V V  D   L      + L+
Sbjct: 391 D-----GVPWRRMAVLVRT---AVRQVPLLRRALSAAGVPVAVAGDELPLVQEPGARPLI 442

Query: 423 ALGRFILSQE--DDLSFVCMLKSPLFNF---------------------------SEDDI 453
            L R  ++    D  +   +L  PL                               +  +
Sbjct: 443 TLLRVAVNPAALDIGTAEELLTGPLGGTDVIGVRRLRRALRAAEQEAAAAAAEADGQATL 502

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ-----FCSPHDFFTLIL 508
                   E         +  +          + +  L+ IA+          D    I 
Sbjct: 503 PFTPRSSDELLIAALRDPRELSGVEPHIAAPAERVARLLAIAREGVRRHRPAEDVLWDIW 562

Query: 509 GAKKGRQQFISR------FGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISEL--EQ 556
            A    +++ +        G +    LD      +   R  ++   + ++  + +L   +
Sbjct: 563 QASGLAERWTAESLAGGTRGAQADRDLDGVVALFDHAARFTDRLPKAGVEVFLDDLLHRE 622

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                    +   + VRI+T H AKGLE  VV +      ++    ++   +      + 
Sbjct: 623 IAGDTLAEAAPEGDAVRILTAHRAKGLEWDVVVVAGVQEGIWPDLRLRGSLLGVDELVEL 682

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                 L     +E  RL YV +TRA  +L++        E++ 
Sbjct: 683 TDRSM-------PEGDRAAAAALTSRLLDEERRLFYVAVTRARRRLVVTAVGGADTEERP 735

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI------ 730
           ++     +   +       +   L+      +  A       PE         +      
Sbjct: 736 SRFLTELLPAGAEPAAVDDRMRWLSLPALVADLRAAVCDPKRPEPVRRAAAAHLARLARA 795

Query: 731 ----KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF------ 780
                   +   + +          +    ++PS ++   +  L  LL            
Sbjct: 796 GVPGAAPGEWYALTELSDDRPLTWPDGAVRVSPSAVERFTECALRWLLETAVGTGNGGPN 855

Query: 781 -NRGLIIHKLLQVIFTLPEH----KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
            + G+++H +  +     +     +R + +          +  K+ +  +  I       
Sbjct: 856 QHVGVVVHAIAALAAEGGDETDLVRRLDDVWDRFDFGGAWFNRKQREAAVGMI------E 909

Query: 836 MMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEI 893
                        V+V           ++I+GR+D++    Q    I + KT    P+  
Sbjct: 910 RFARWQRERVRELVAVEEPFTARVGPGVLITGRVDRLERDRQGRPVIVDIKTGSGKPKND 969

Query: 894 EHIPYTHIAQLSIYEKI 910
           E        QL +Y+  
Sbjct: 970 EIDR---HPQLGVYQLA 983


>gi|158312780|ref|YP_001505288.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108185|gb|ABW10382.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 1088

 Score =  237 bits (603), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 126/1047 (12%), Positives = 273/1047 (26%), Gaps = 208/1047 (19%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R GL  +    +             +   +  +L+           A   + +      +
Sbjct: 129  RLGLEPDTRMLVAAARYQLAARVARAHRGRVEALTKSMPALVADLVALDGEMSEHLVSAD 188

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            +  +  +  F          + +  +   +  L+++L++                    T
Sbjct: 189  DLMAFDADLF----DRAMAALASAALRPGTKGLRKELRRMAA-----------------T 227

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                     L A Y  A++   VLDF D +     L +    S  +          +L+D
Sbjct: 228  ARGRRELAGLVADYRAARRGRDVLDFGDQVTFAARLAR---YSPEVGAAERTRAGVVLLD 284

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS+ Q  ++  L                + AVGD  Q+IY + GA    +      
Sbjct: 285  EYQDTSVAQRTMLAGLFG----------GGHPVTAVGDPCQAIYGWRGASVANLDNFPDH 334

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                    G   +   L ++ RS   +LT+ + V +       +                
Sbjct: 335  FP---CADGTPSARYLLSVNQRSGGRLLTLANAVAAPLRARHHV---------------- 375

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                V+L  +       +              +    S +     +A  ++ ++      
Sbjct: 376  ----VELRPRADVVAAGRT------------LVALHESWAQEVTWVAARLAELVAAGE-- 417

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                    +  ++ VLVR R D   +            + V       L D   + D++A
Sbjct: 418  --------RPGNMAVLVRARSDVRALHTALTA----AGLPVEVVGLAGLLDLPEVADVVA 465

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--------------------- 462
            +   + S   + + V +L  P       D+  +  +                        
Sbjct: 466  VLEVLDSPVANAALVRLLTGPRVRLGPRDLAALGRRARALLHTTGTTAPTAAGGDGDGSA 525

Query: 463  ----------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                             + + +  ++ +  G  +   +   +  L          D    
Sbjct: 526  LAEAVAGVDPCDVVALADALTDPGEEISAQGRERAARLGAELAALRAHVGDG-LLDLLHR 584

Query: 507  ILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIK 562
            ++       +  +          + L  FL+     +     +SL   +  L       +
Sbjct: 585  VISTIGLDVELAASPRAVAARRRENLASFLDAAADFDDPDGPNSLTSFLGFLRAAREHER 644

Query: 563  RAH---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI-----MPSLND 614
                   +  + V +MT+H AKGLE  VV + +    VF    ++         +P+   
Sbjct: 645  GLDITGPSGADAVALMTMHRAKGLEWEVVAVPNLSRGVFPDLTVRDRWPTTTGVLPTPLR 704

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                 +   +       +    +  ++  + E  RL YV  TRA   L+   H     ++
Sbjct: 705  GDAAELPSYELDDSKAALEAYTEDCREYQEREERRLAYVAFTRAKSVLLGSGHWWGPTQR 764

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----------- 723
                 + +         +   +    T+   +    A           P           
Sbjct: 765  TRRGPSVFLTELHDHAAEGNGRVDVWTSEPERGGNPALAVPAEFAWPAPYEPVAFARRRE 824

Query: 724  --------------------------------------LEREETIKQLMDEQKIPKKLFS 745
                                                   E    + +    +   + +  
Sbjct: 825  AAAGVAEALAMIRSGQAPPADEPGGMTAREQALLAELDREAALLLAEERMARAPFRDVPI 884

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
            P     +E   +    ++                  RG   H  ++ +F     +R    
Sbjct: 885  PASLTASEIVRMRADPVEFARDLARPVPRRPVPQARRGTRFHAWVEEMFD----QRPLID 940

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
                   A      +  +L       L +P              ++            + 
Sbjct: 941  VEDLADAADAAVLTDDHDLSGLQAAFLASPYGA-------RRPFALEAPFEVMIGGRAVR 993

Query: 866  GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP--NKSLVC 922
            GRID +         + ++KT                 QL++Y              +  
Sbjct: 994  GRIDAVYELGGGRWEVVDWKTGSEAADP---------VQLAVYRVAWARVRGVAVADVDA 1044

Query: 923  LLIYVSEPKVFIIP---QNKLNKAFAE 946
               YV+  +V   P   ++++    + 
Sbjct: 1045 AYFYVASGQVVRPPLLGEDEITALLSG 1071


>gi|254452740|ref|ZP_05066177.1| exodeoxyribonuclease V, beta subunit [Octadecabacter antarcticus 238]
 gi|198267146|gb|EDY91416.1| exodeoxyribonuclease V, beta subunit [Octadecabacter antarcticus 238]
          Length = 1051

 Score =  237 bits (603), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 127/962 (13%), Positives = 289/962 (30%), Gaps = 127/962 (13%)

Query: 2    KNRFG-LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--ILKKAQTLQQASQ 58
            ++ +G +  + +   +   L       ++     ++    +        K  + +++A +
Sbjct: 177  RDLYGRVEPDGAP--LEARLIAAINALLAAFPNDLTAHATSAAARTAFGKDFRNMKRALR 234

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               +   + L  S         +++            L +++  +  +            
Sbjct: 235  PGELRRDWGLWKSL-----SELRQSKRGAPTPDGYDALSDEVIAAASDI--AVHPGPLED 287

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                  A +  A+ + + Y + K++  V+D+ D+I +   LL+       I   +  E++
Sbjct: 288  ACAHLTALVHGAQEVMSKYADMKREAGVIDYADMICDAERLLRT---RPEILEALLSEVD 344

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             ++IDE QDT+ +Q+ ++  + +          S + +  VGD KQSI  F GA+P+   
Sbjct: 345  CVIIDEFQDTNPVQFALLWRIAQ----------SAKRVLIVGDTKQSIMGFQGADPRLSE 394

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +R N + A+          L  ++RS   ++ +V+ +                 +   
Sbjct: 395  ALERQNPEAAS---------PLTGNWRSDPRLMQMVNTI--------SAGLFKEAYVPLE 437

Query: 299  SSRIGQVGTV-QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
              R     T  ++      +   +  P++       D L +                  +
Sbjct: 438  PQRPETGQTFSEILRIPEGRRSKKSRPEEHVSARIADILAEAGPV--------------V 483

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
              ++       R ++ +DI +L              +     + + V  +    L D  A
Sbjct: 484  ERESDPKAPTFRPVEPRDIAILAPTHSMAARYATALK----RHGVPVRISAAGWL-DSPA 538

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            I        F +   D  + + +L    F                   + + +   A+  
Sbjct: 539  IMAARNALAFAVDPTDLHAALALLTLGPF----------------AVPLQQAMSLLADGE 582

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRFGNEVIDVLDEFLNFT 536
            +     +   +  L   A           +L A        +S    +    L       
Sbjct: 583  LENCPQLAD-LRSLAGTAPSMPLETLLPQVLRASGILDWAALSPEATQAHADLMRLHAEV 641

Query: 537  LRN----------EQNSYSSLQELISELEQYPPTIKRAHSANHN-----EVRIMTVHTAK 581
                              +S Q  +  LE            +        V I+T H +K
Sbjct: 642  SEFVSAHRDFKAAAGFHGASAQVFLGWLEARRDERDFDRHPDPGQSEGQGVEIVTWHASK 701

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD---LIKH 638
            G E P+  +V     +       +       +    +           +I       I+ 
Sbjct: 702  GREWPITVVVGLDKAIGEKPGTLRAEFTDFSDLGAILEHARLIWTPDLSIKEKKEIFIED 761

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDER- 694
             + + + +  RLLYV +TR  D+LI            E          +V ++    +  
Sbjct: 762  RRPAAEADARRLLYVALTRGRDRLIFEWPDFALKKLGEGDGPANHAEMLVLEAGMEPQAG 821

Query: 695  ---VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
               V        +        +     P +    R    +    ++  P    +      
Sbjct: 822  SLKVGGASFPARMLACIAAVPDMPDLSPAHASGARAAFGELRALQETRPTVWRTRPSQLG 881

Query: 752  NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
            +E      + + T    +  + L+      RG  +HK L+V+       R +  +     
Sbjct: 882  SELGPAVKTEVVTLDIQHQVASLA-ATASERGTALHKALRVL-----LLRPDLRSRLVEA 935

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQ 870
                +       L            +   ++ + Y+E+     I   +   + ++G ID 
Sbjct: 936  TG--FDEATLGVLAEQAAA------LNRWLTAEGYTEIECEVPIQKREASGVEVNGIIDL 987

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            ++       I ++K+      +       + AQL  Y K+L            + ++   
Sbjct: 988  LATGAGKQLILDHKSGAGTFAD-------YAAQLDAYGKLLAQQSDGDLPHLAIHWIDRA 1040

Query: 931  KV 932
            +V
Sbjct: 1041 QV 1042


>gi|307244586|ref|ZP_07526690.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
           stomatis DSM 17678]
 gi|306491967|gb|EFM64016.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus
           stomatis DSM 17678]
          Length = 623

 Score =  237 bits (603), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 97/601 (16%), Positives = 195/601 (32%), Gaps = 122/601 (20%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            + +    +E   +++    Y  + S      + +     YE+ KK+   +DF+D++I  
Sbjct: 128 DDDVLDLLNEISLVKNELLDYMAYDSHCFEQEIFQKAYKLYEDEKKRYGKIDFDDMLIQA 187

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            DLL        I   + Q   +IL+DE QD + +Q+E+IR +              + +
Sbjct: 188 YDLLNDDPA---ILSIVRQVFKYILVDEFQDINRVQFELIRLIAGQ----------EKNI 234

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           F VGDE QSIY F GA P  +L   +               I L  ++RS+ DI+ +   
Sbjct: 235 FVVGDEDQSIYGFRGARPDFMLEFDQYFP--------GGQHILLDTNYRSSKDIVDLSLG 286

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +    +               R+        V ++ +                       
Sbjct: 287 LIKKNKKR--------HPKDLRAFNKEASKIVYIYPKDTDDE------------------ 320

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                    AR +A  I + +G+               D  V+ R  +            
Sbjct: 321 ---------ARLVAQQIYDRVGSKDGPD--------YGDFAVIYRTNRQARAFVDAF--- 360

Query: 397 KNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
             D +I  +  D    + DH    D++A  R  +       +  ++  P    S+  I K
Sbjct: 361 -MDKRIPFILKDAPKTIYDHWVSLDIIAYLRIAMDIGSGGDWARVINKPFRYISKKSIVK 419

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                   +++    +   +      + +   ++ +  ++       +    L   +   
Sbjct: 420 AEASMDFLDSLL-KDEDIKDFQKKNLEDLYIDLNYVRGLSPQYGIS-YIRTTLDYDRYIL 477

Query: 516 QFISR---FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS------ 566
           ++         +++++LDE            Y ++ +    ++Q    +K++        
Sbjct: 478 EYCHERKIKSQQIVEILDELETAA-----GPYKTILDFFKHIDQVREEVKKSADKTGGSS 532

Query: 567 ---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
              +    V + T+H++KGLE   V++V     +                          
Sbjct: 533 LATSADKGVVLTTMHSSKGLEFDSVYIVGVNEGLVP------------------------ 568

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                       +    K   EE  RLLYV +TRA   L++        +K        +
Sbjct: 569 ----------YQVSEESKLDIEEERRLLYVAITRAKKTLVVSSPLKRFGKKIGLSPFLKE 618

Query: 684 M 684
           +
Sbjct: 619 L 619


>gi|237725569|ref|ZP_04556050.1| ATP-dependent helicase [Bacteroides sp. D4]
 gi|229436256|gb|EEO46333.1| ATP-dependent helicase [Bacteroides dorei 5_1_36/D4]
          Length = 1058

 Score =  237 bits (603), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 124/816 (15%), Positives = 259/816 (31%), Gaps = 105/816 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    E   +N       L+ +TN LL        S+++  KI   I +++ID
Sbjct: 340  IRLLANIDEEVRELNHENNRF----LLSDTNALLHNLVKEGDSSFVFEKIGTTIRNVMID 395

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  R L  +                VGD KQSIY +   +   +   K  
Sbjct: 396  EFQDTSRMQWDNFRLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLKTN 449

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +           +  L  + RS A+I+   ++VF+                  +  +  
Sbjct: 450  IEAF------PVKVKTLTTNRRSAANIIHFNNEVFTAACEVLNNIYKEEQKKECKELKEA 503

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   +      +       +        +   +  ++      
Sbjct: 504  YN--------DVCQETYKDPGKGYVKVEFLSDTEDMTYMENTLHHLGEEVELLVAQG--- 552

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +Q KDI +LVRK +  PLI         +    +V ++ F L   LA+  +M 
Sbjct: 553  -------VQLKDIAILVRKNRSIPLIADYFD---KNTSYKIVSDEAFRLDASLAVCMIMD 602

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSED--DIFKICTQRHETETVYEYIQKFANCGISKF 481
              R++   E+ ++   +  +          D+  +     +    +++I++     +   
Sbjct: 603  GLRYLSQPENRIAKAQLAAAYQNEVLHKGIDLNALLLNEIDDYLPFDFIKEAEQLRLMPL 662

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              +++ +  L  ++                            +    L  F +      Q
Sbjct: 663  YELMEKLFNLFQMSC-------------------------IEQQDAYLCAFFDAVTEYLQ 697

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH- 600
            ++ S L   I+  E+     K   S     +RI+++H +KGLE   V L     ++ +  
Sbjct: 698  SNSSELSAFITYWEEK-LGSKTIPSGEVEGIRILSIHKSKGLEYHTVLLPFCDWKMENET 756

Query: 601  -KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
              H+       +   D  I      +  + +I  +   + +     +   LLYV  TRA 
Sbjct: 757  YNHLVWCAPRQAPFSDLDIVPINYSTAMQQSIYREEFLNERLQLWVDNLNLLYVAFTRAK 816

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
              LII   +           +                     + +    +   E      
Sbjct: 817  KNLIIYGKAEQKGTVSELLGS-------------------ALSDMTGKSYATGEEIYELG 857

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                   EE  +   ++     +        +        S    +     E   ++++ 
Sbjct: 858  TLYLSSHEEEKQVSGNKLLTVARRLPIHLETLETNIEFKQSNRSAEFIRGEEE--TEDKY 915

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
              +G ++H L  VI           I         +  A++ + +       L++P++  
Sbjct: 916  IRQGQLLHNLFSVI--RTTDDVPPAIER-LRFEGIIESAQQEEQIRKLTEWALKHPLVKE 972

Query: 840  AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
              S     E+     I   +K ++ + R D++ +    + + ++K               
Sbjct: 973  WYS--GRWELYNECAIIYREKGVLQTRRPDRVMMKDGEVIVVDFKFGKK--------RKA 1022

Query: 900  HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            +  Q+  Y  +L D      +   L YV   ++  I
Sbjct: 1023 YNKQVKEYMDLLSDMGYEH-IRGYLWYVFNNELEEI 1057


>gi|56964348|ref|YP_176079.1| ATP-dependent exoDNAse beta subunit [Bacillus clausii KSM-K16]
 gi|56910591|dbj|BAD65118.1| ATP-dependent exoDNAse beta subunit [Bacillus clausii KSM-K16]
          Length = 863

 Score =  237 bits (603), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 119/646 (18%), Positives = 224/646 (34%), Gaps = 66/646 (10%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
           + T  K AQ+L   +Q+  +        +           + + +   +  P L    + 
Sbjct: 238 SKTEQKHAQSLTTLAQSLQLAANEEEAVA----MMNEALPSRVQKAWQESLPSLYVFYEH 293

Query: 103 SQDEFI---KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +   F      R++  + +      A +TL +     Y + K +  V DF DL      L
Sbjct: 294 NWKPFKKQWSERNQVCSDRGLPLLKAFVTLLQAFAKRYADLKAQRLVADFSDLQQKAYTL 353

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L+       +         HI++DE QDT+ +Q ++++++            +P  LF V
Sbjct: 354 LQ----LPKVAAACQSAYTHIMVDEFQDTNQVQLQIVQAI------------NPAHLFFV 397

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GDEKQSIY F GA+   +         +      +  +I L  ++R+   I+ +V+++F+
Sbjct: 398 GDEKQSIYRFRGADVAIMNEM-----AKKAAEINEGELIHLQENYRTAPQIVELVNELFA 452

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                 G       T                    V     +     +   + F  L + 
Sbjct: 453 HVMAPGGEDALPYATSY------------------VPLKAGRKPHTNKQALAAFHQLEKS 494

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
           + A   A  +  TI++  G   +   GK R  Q  D+ VL+  R + P +          
Sbjct: 495 NEARSFASLLQQTIAD--GMIEVEGEGKVRQAQWNDVAVLLPSRTNLPELEQAFAE---- 548

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I    +      +   + D + +  ++    +D   V +L+SPLF  +  D+  +   
Sbjct: 549 AGIPYRVHGGVGFFEKQEVIDFLNVLNWLRRPFEDAYVVALLRSPLFGLTLSDLLTVNDC 608

Query: 460 RHETETVYEYIQKFA----NCGISKFQHVIKYIHELIHI----AQFCSPHDFFTLILGAK 511
           + E E +  ++ K           + Q  +K   E I +    A   S  +    +    
Sbjct: 609 KEEHENLAVFLAKEEAPSLFANHPRLQQALKQYGEWIDLFLPFAFTGSVKEGLLQLFELT 668

Query: 512 KGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSA-N 568
             R   +S   G + +  +++ ++   +    +  +L  ++   +       +       
Sbjct: 669 GLRYAVLSDTNGIQRVGNVEKLIDLFAQLNTTNLETLCLQMNRYIAASKNVPEAEVEQLE 728

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V IMTVH +KGLE PVV L     +                 D         +    
Sbjct: 729 GEAVTIMTVHASKGLEFPVVCLPYMDQKRRPDTDA---VYFDQEWDIVFQLKLDDRDPIS 785

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                   +   K   EE  RL YV +TRA D  ++     +    
Sbjct: 786 TPAYFQAQEKRGKQALEEAKRLFYVALTRAKDYCLLAAADLSERRS 831


>gi|171318888|ref|ZP_02908022.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MEX-5]
 gi|171095918|gb|EDT40856.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MEX-5]
          Length = 1234

 Score =  237 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 124/985 (12%), Positives = 267/985 (27%), Gaps = 131/985 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             LW      +  + +    ++   +      A  L   S      +  + L    L    
Sbjct: 240  RLWADERDAIDALLRAAQPALNQRSHKPDALADALGAWSAHFAQADAAAALPKAALKLTR 299

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T       +          +     +              +        T    L     
Sbjct: 300  TALAKATKKGGVTPEHTFFDVADALEAAVAAAEATQRGRWLALIADWLDTAPGELAER-- 357

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 358  --KRTRRVVSFDDLLANLYRALHAHP---WLAETLRARYPAALIDEFQDTDPLQFAIFNR 412

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 413  IFA----------PGGPLFLVGDPKQAIYSFRAADLHTYLAARA----------SASACY 452

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   ++ F     A  L       +R           V+      +  
Sbjct: 453  TLAVNQRSTPAIVDACNRFFMSNPRAFVLDGLDYYAVR-------AGTRVRASFVDATDP 505

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDIL 377
                + +  +     D+L +  + +  A+  A  I+ ++              +   DI 
Sbjct: 506  GPAGDFRIWALPGGDDTLLKRDAQAQAAQACAAEIARLMRGAREGQARLGDTPLSPGDIA 565

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VLV+  +   L+  +       + I  V   +  +      + L  +   I +  D    
Sbjct: 566  VLVQTHRQGSLVKRVLAT----WGIGSVELAQASVFSTDDAEQLERVLAAIDAPGDLRRL 621

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHE--TETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
               L +  F      ++++     +   E              S+++ + +     +   
Sbjct: 622  RAALAADWFGLDAGALWRMEQGDGDASREAADSADAMSWVERFSRYRLLWRERGFAVMWR 681

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-EL 554
             F         ++    G ++            L E        +     +L+ L +  L
Sbjct: 682  TFTRELRIAERLMAGADGERRVTDIN------HLAELTQARASAQPGIAPTLRWLAAQRL 735

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +      +    ++ N V+I+TVH +KGLE  VVF                +      +D
Sbjct: 736  DGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPASGLPDAREYHD 795

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSN 672
            D G  +        +       +   +    E  RL+YV +TRA  +  +    + ++ +
Sbjct: 796  DAGDAVLHYGC--DDEAAEHAARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRS 853

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +++ +     +V  +  + +         ++    W A           P+        
Sbjct: 854  TREARRSVLNWLVAGAGQSFDAWLDEPPDEAVLDAAWQALAGGPVSVAPLPVPARPERLA 913

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------------------------- 764
               +           +   +   + + S++                              
Sbjct: 914  AGHDATQTLTARHATRVLRDAWRMASFSSLTASMAREEAGVAVVPDDEFRPDHDALAAVA 973

Query: 765  -----------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                         +   + +L   +    G  +H+L ++                     
Sbjct: 974  PDGAFVAADTVATEPPDDDILLFPRGAAAGECLHRLFELSRFTEPDSWHQAALGALHDRP 1033

Query: 814  KLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII- 863
                 +    L   + RL+++           +          E+         +   + 
Sbjct: 1034 VEAEPELATRLPAMMARLVDDVVRTELVPGMRLADLDPVRRLDEMGFLFPAPSLELGALR 1093

Query: 864  ---------------------ISGRIDQISISQQNIFIFEYKTHH---------HVPQEI 893
                                 I G ID I       +I ++K++H             ++
Sbjct: 1094 RLLVAHGYLDVALDSGMLAGFIKGFIDMIVEHDGRFWIVDWKSNHLGNTPDAYGPRALDV 1153

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNK 918
                + +  Q  +Y   L      +
Sbjct: 1154 AMADHAYHLQALLYTVALHRYLRGR 1178


>gi|258406127|ref|YP_003198869.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798354|gb|ACV69291.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 714

 Score =  237 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 112/737 (15%), Positives = 223/737 (30%), Gaps = 144/737 (19%)

Query: 8   SLNESYELIYKDLWPLPY-FQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEER 65
           + NE             +       + +   +    G      +  ++   S  + + ++
Sbjct: 65  AANEMLTRAAHLAGQGLHGVAGGTFHAFAFGMLRRFGQRLGYDQGVSIMDRSDAEGVVKQ 124

Query: 66  FSLLSSFFLTQKFTPQK----NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
              +       +  P+K    +++++  NK+  DL++ L       +   +         
Sbjct: 125 VREMEGVGKGDRSFPRKGAVLSLMSKARNKE-RDLEDILASEAGHLLPHAEGIQI----- 178

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                      +   YE  K K+ +LD++DL+     LL++ +    IR  + Q  +H++
Sbjct: 179 -----------IQRGYEAFKAKHGLLDYDDLLFKFETLLREHED---IRDFLVQRYSHLM 224

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDT+L+Q  ++R L+               + AVGD+ QS+Y+F GA    +L+  
Sbjct: 225 IDEFQDTNLVQGRLVRLLSG----------PEANVMAVGDDAQSVYAFRGATVNNILQFT 274

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                          +I+L  ++RST  IL + +++             S         R
Sbjct: 275 SDFP--------GTKVIKLEQNYRSTQPILELTNQILGQATAKYEKHLFSE--------R 318

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           I       +                              S    A+ +   I  +     
Sbjct: 319 IEGPKPQVVRPL---------------------------SDMTQAQGVVDKIVEL----- 346

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                  R     DI VL R    +  +      L     I           +   IKD 
Sbjct: 347 ------SRTTPLHDIAVLFRAGYQSYPLEVALNKL----GIGYQKFGGMRFAESAHIKDF 396

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           +A  R + +  D  ++   L S L         +I       +   E   +     + + 
Sbjct: 397 VAHLRLVANPADLPAWQRAL-SLLPGIGPKTCERIYEATLHGD---EAYMRRTCKRVPEL 452

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEFLNFTLRNE 540
           ++ +  +  L +             +L   +   ++       +    L+E         
Sbjct: 453 ENTLTLLDNLRN--SRLGVAPVIEQLLDYYRPHMEERYPDDYPKRQAGLEELAQIAAGYT 510

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +     L++ ++++    P     H    ++V + T+H+AKGLE   V L+D     F  
Sbjct: 511 K-----LEDFLADMSLDNPDPGSGHGVEEDKVVLSTIHSAKGLEWSAVLLIDLVEDRFPS 565

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +H                                     +    EE  RL+YV  TRA D
Sbjct: 566 RHALS----------------------------------RPDDMEEERRLMYVACTRARD 591

Query: 661 QLII----CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            L +      +             +   +  S + + R           +         +
Sbjct: 592 FLGLYVPDTVYKRNQGSTPVLPSPFVQELPSSTYEEWREGYAGGFRRQQEPAPKPAAQRS 651

Query: 717 HHPENTPLEREETIKQL 733
              +        +  Q 
Sbjct: 652 VQDDAPVNSASTSQAQP 668


>gi|198277205|ref|ZP_03209736.1| hypothetical protein BACPLE_03414 [Bacteroides plebeius DSM 17135]
 gi|198269703|gb|EDY93973.1| hypothetical protein BACPLE_03414 [Bacteroides plebeius DSM 17135]
          Length = 1075

 Score =  237 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 118/858 (13%), Positives = 266/858 (31%), Gaps = 105/858 (12%)

Query: 92   KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
             + +L   L ++++   +     N+  +    L +L L  +++       + +       
Sbjct: 305  AASELIPLLAEAENRRPQNNLLLNSCDLSLRYLNNLRLLAHIDEEVRLQNQAHNRF---- 360

Query: 152  LIINTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            L+ +TN LL    +   ++++  KI   I+ ++IDE QDTS +QWE    L ++    K 
Sbjct: 361  LLSDTNALLHSLIREGDASFVYEKIGTTIDTVMIDEFQDTSRMQWENFHLLLQESLAQKE 420

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                      VGD KQSIY +   + K +                +     L  ++RS A
Sbjct: 421  GS------LIVGDIKQSIYRWRSGDWKILAGLGND-------RSFRIKECTLDTNWRSEA 467

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
             I+   ++ F+               +            ++     V Q  ++   +   
Sbjct: 468  RIIRFNNEFFTAACQTLNRRYQEEQGMPCA--------QLEQAYSDVRQRCAKKEEKGFV 519

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
              ++     +         ++A  +  +              I+  ++ +LVRK +  P 
Sbjct: 520  KVTFLQDSKERPYTEATLEQLAEEVERLTAEG----------IRLNEMAILVRKNRSIPD 569

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            I              +V ++ F L+  LA+  L+   R++ S +D ++   +  +     
Sbjct: 570  IAAYFDE---HTPYRIVSDEAFRLSASLAVSMLIDGLRYLSSPDDRIALARLAVAYQQGV 626

Query: 449  SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
               DI        +         +                    +  +F   ++    + 
Sbjct: 627  LRKDISLNTVLLDDPSRYLPAAFQLQ-----------------ANELRFMPLYELLEKLF 669

Query: 509  GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                       +   +    L  F +      QN+ S L   I   ++     K   S  
Sbjct: 670  VLFD------MQLIEKQDAYLCAFYDAVTEYMQNNSSELTAFIRFWDEK-LNAKTIPSGE 722

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH---------IMPSLNDDPGIP 619
             + +RI+++H +KGLE   V L     ++ +  +   +                +   I 
Sbjct: 723  IDGIRILSIHKSKGLEYHTVLLPFCDWKMENETNNHLIWCSVAGTGKETDIPPFNRLDIV 782

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                      ++  D     K     +   LLYV  TRA   LII   +           
Sbjct: 783  PVNYSGAMAESVYHDDYLEEKLQLWVDNLNLLYVAFTRACKNLIIFAKAGQKGTVSELLY 842

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                ++ +      +            +   A++       N      E +   M+  + 
Sbjct: 843  DSLPLMQEVELPLAQENPEDDAVGEYGELCTAHDEKKAGKSNRLSSPREGVPVKMESIET 902

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
              +                 S          ++  +  Q   +G ++H++   I    + 
Sbjct: 903  HIEFKQ--------------SNRSADFIQGDDTEDTRGQYIRQGQLLHQVFAHI---EKA 945

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINC 857
                      +        ++ + +       L++P +    S   + Y+E ++   +  
Sbjct: 946  DDLPSALERLSFEGVFESEEQKQQIQGLAHWALQHPAVKDWFSGTWELYNECAI---VYT 1002

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
             ++  + + R D++      + + ++K               + AQ+  Y  +L      
Sbjct: 1003 DEEGQMQTRRPDRVMRKDGQVVVVDFKFGKKN--------EAYRAQVQEYMDLLTQMGYT 1054

Query: 918  KSLVCLLIYVSEPKVFII 935
              +   L YV   ++  +
Sbjct: 1055 H-IRGFLWYVFANELEEV 1071


>gi|226940129|ref|YP_002795202.1| RecB [Laribacter hongkongensis HLHK9]
 gi|226715055|gb|ACO74193.1| RecB [Laribacter hongkongensis HLHK9]
          Length = 1216

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 132/978 (13%), Positives = 268/978 (27%), Gaps = 132/978 (13%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            +    +     K  W    +          L           +A + Q+      + +  
Sbjct: 220  VEAILAARRAEKAAWRQQGWLEELARTLTGLRENKTVNGNKVRADSCQKWLD--DLADWL 277

Query: 67   SLLSSFFLTQKF---TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            +  S           T +  +    I                  ++   +          
Sbjct: 278  ARDSDDLPLAGKPFETARWRLTPAGILDALKAGMSFDPPEPFFAVERLLQPALADTSLRA 337

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEINHILI 182
                   + + A     K +   + F+D+I      L         +   + Q     LI
Sbjct: 338  ALLTHATRSIAAALAAEKSRRAEIGFDDMIRGLAQALAPDSPNRERLAQALRQAYPVALI 397

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT   Q+ + R+L  D         +   L  +GD KQ+IY+F GA+    L  + 
Sbjct: 398  DEFQDTDPAQYAIFRTLYADA-----GPEARLGLLMIGDPKQAIYAFRGADIFTYLAARH 452

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              +              L  ++RST  ++ VV+++F     A  +SE            +
Sbjct: 453  DTR--------PEQRYTLDTNWRSTTAMVGVVNQLFCGSPEAGTVSETVFGRPDIPFQAV 504

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI---GT 359
               G  +                  +     ++  ++      ARR A  I+ ++     
Sbjct: 505  RAAGRSERL------VQGGMPVPPLTLAWRQEAGNKDDYRQEFARRAAEAITTLLNDSEA 558

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              +  +G    +  +DI VLVR  ++   I    R L      SV  +D+  +      +
Sbjct: 559  GLLADDGGFEPLAPRDIAVLVRDWQEAAAIR---RALDLCSVRSVYLSDKDSVFASQEAQ 615

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            DL+     +L  ED+      L +         + ++     E                 
Sbjct: 616  DLVRWLDAVLYAEDNARLRLALATATLGLDYAGLDRLFNDERE----------------- 658

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT--L 537
             ++   +         +          +L   +   + ++R        L   L+    L
Sbjct: 659  -WERTSERFRSYRQTWRQQGVLPMLLALLHDYRLPARLLARRDEGGERQLTNLLHLAERL 717

Query: 538  RNEQNSYSSLQELISELEQYPP------TIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            + +         ++  LE+                +    VR++T+H +KGLE P+VFL 
Sbjct: 718  QADAAGIDGEVGVLRHLERLTEQPDAAQESVLRLESEDARVRVVTLHKSKGLEYPLVFLP 777

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                          +       D  G        +  + +       +++ + +E  RLL
Sbjct: 778  FLAGGRALPDGRNGIFWH----DGDGRLHVDLTGQDADGL-----AAMQRESAQEDMRLL 828

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY----------DSFHNDERVKKIKLT 701
            YV +TRA   L I     +             ++                 +    I+L 
Sbjct: 829  YVALTRARHALWIGLSPLSGTGDLLAGSAIGRLLQLDSDPGRLAGRLHALAQAGSDIRLD 888

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
            ++   D    Y  ST  P   P  R                L +            + + 
Sbjct: 889  DTPPADPPPRYCDSTPAPVLFPARRLTRRIARRWRIASYSALLTGPAQAGPPAAEDSAAA 948

Query: 762  IDTKGKTNLESLLSDNQTF---------NRGLIIHKLLQVIFTLP-------EHKRKNFI 805
                     +S +                 G+ +H L +               +R++ +
Sbjct: 949  NRIDDTAMPDSPVLPIAGRTLAGFWRGPQAGIFLHGLFEWAAQQGFGRTCELAAERRDLL 1008

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRL---LENP---MMTTAMSCDSYSEVSVSG------ 853
               C +         +   L  +      L +     +       + +E           
Sbjct: 1009 ARRCQRRELAGWIDFFDGWLPWVLTRPLPLNDASPVTLAALPPRSARAETEFWLGNPQLA 1068

Query: 854  -------------------KINCPKKDIIISGRIDQISISQQNIFIFEYKTH-------- 886
                                +       +  G ID +   +   ++ +YK++        
Sbjct: 1069 TTALDAAVSVAVWPGHARPALLPQSLQGLFKGFIDLVFEHEGRFYVLDYKSNWLGDTPGS 1128

Query: 887  -HHVPQEIEHIPYTHIAQ 903
             H      E + + +  Q
Sbjct: 1129 YHPDALRDEMLAHRYELQ 1146


>gi|40789159|emb|CAE84140.1| putative helicase [Pseudomonas fluorescens]
          Length = 1121

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 147/957 (15%), Positives = 296/957 (30%), Gaps = 116/957 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLSSFFL 74
            +      +   Q SD+ + ++            + A  +     +    E F   +S+ L
Sbjct: 243  LDAAQQAISLIQGSDLERAMTCLKSASCALDGFEWAAEMPAPIASAKALEYFGQFASYML 302

Query: 75   TQKFTPQ-----------KNIITQEINKKSPDLK-----EKLKKSQDEFIKIRDRFNTYK 118
            T   T +           K+  T E+N    DLK     ++  ++      + +     +
Sbjct: 303  TSTGTLRAKVTVANGFPAKHFCTVEMNGILADLKVNPHSQEYAQALATLATLPELQYPAR 362

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              K       + +YL A+   A +    LDF ++       L   +       + D  I 
Sbjct: 363  SAKMVEHFTVILRYLLANLTLAMEGTNSLDFPEIAQRAIQALGAGETVGDALLEED-RIL 421

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HI++DE QDT+  Q++++  L E++       +  R++  VGD  QSIY F GA+     
Sbjct: 422  HIMVDEFQDTNQAQYDLLNLLVENW-----EPADNRSIAYVGDGFQSIYLFRGADLNLFT 476

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                          ++  I+ L ++FRS   ++   +        A+   + +   +   
Sbjct: 477  SVVE----AKAFGPKQMDILRLTVNFRSLPGVVEWNNA-----TYAEVFKDSAYEFVPSV 527

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R G  G V +      Q                            A  +   +   + 
Sbjct: 528  AFRKGDGG-VSVHPVATGQ-------------------------IGEAEEVTKVVQEALT 561

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             D             K I +LVR R     I  + +       I V G D   + +   +
Sbjct: 562  KDPS-----------KSIAILVRGRSHLKHILPMLKE----AGIEVRGKDIDPIGEAAPV 606

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             ++++L R +    D  S++ +L++     S  D   +    +  E         A    
Sbjct: 607  SEVISLIRSLWHSADRASWIALLRAAFVGLSWADCLTVARGHNVIENALRDEGVQAQLSS 666

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
                 V++ +  L  + +     +    +           +    E+ DV   F   T  
Sbjct: 667  EGLTRVLRLLEVLDGVKRSSRGSELGWAVKSVWIALGGPATVNTGEMDDVETIFKLLTSH 726

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E       Q     +++         S     V +MT H +KGLE  +V +        
Sbjct: 727  TESGDLIDPQAFFRAIDKAY------ASPKAGAVTVMTCHGSKGLEYDIVLIPGLNKGGA 780

Query: 599  SHKHIK-KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                       M  +         +  +   + +   + + ++K   +E  R  YVG TR
Sbjct: 781  KDDAPLFYFRQMDGVFSVVPNLGDLDTTTPESRLFKFVGRMVRKDISDEVCRAAYVGTTR 840

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A +   +    +            +         ++ +K    + +      I  +    
Sbjct: 841  AKEDCHLFVCVDR-----------FPAAEGEVQKEKEIKPAAGSLAECLWSAIGAQVKAV 889

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
             P    +   ++            K+  P    +         T +       E   SD 
Sbjct: 890  APAFPIVAVTDSGVPSKARLAPSYKVELPKTVFVPAASNDQVPTENELNDELREEEGSDY 949

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNF--------ITSYCTKNAKLWPAKEYKNLLLSIT 829
            +    G++ H  ++ I                   I S   +    +PA E    +  I 
Sbjct: 950  RAKTIGIVYHWFVEQIGKQGIELWDEARVRTKAQAIASMLRREG--FPAAEVPQAVARIL 1007

Query: 830  RLL----ENPMMTTAM--SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
            RLL     +      +     S  EV VS      +    +   +D+        +I +Y
Sbjct: 1008 RLLSNTVNSIHGQWILKKRPGSGHEVQVSA----YRNGRWVHRFLDRPFEDDGVYWISDY 1063

Query: 884  KT-----HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            KT            +      +  ++  YE+ +KD+     +  +L + +  ++  +
Sbjct: 1064 KTPDCPEGMSEDAFVAREVERYRPKMDEYERAVKDAGITIPVKKVLYFPAFDRLAEV 1120


>gi|207743839|ref|YP_002260231.1| uvrd/rep helicase; protein [Ralstonia solanacearum IPO1609]
 gi|206595239|emb|CAQ62166.1| uvrd/rep helicase; protein [Ralstonia solanacearum IPO1609]
          Length = 596

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 102/671 (15%), Positives = 184/671 (27%), Gaps = 148/671 (22%)

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL+  D    IR    +   HIL+DE QDT+ +Q+  ++ L      G      P  +FA
Sbjct: 1   LLRYNDA---IRAHYQRRFKHILVDEFQDTNRLQYAWLKILAGLGEPGVA----PNAIFA 53

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD+ QSIY+F GA    ++  +R  +            I+L  ++RS  +IL   + + 
Sbjct: 54  VGDDDQSIYAFRGANVGNMVDFEREFRVE--------HRIKLEQNYRSHGNILDTANHLI 105

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +      G +  +              G  +L     S  D                   
Sbjct: 106 AHNTRRLGKNLRT------------DAGHGELVRVYQSATDG------------------ 135

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  I   I   I + T             +I +L R    + +I         
Sbjct: 136 -----QEAGWIVDEIRERIVSGTA----------RSEIAILYRSNAQSRVIEHSL----F 176

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I           +   IK  +A  + + + ++D +F  ++  P        +  +  
Sbjct: 177 SVGIPYKVYGGLRFFERAEIKHALAYLQLLENVDNDAAFGRVVNFPARGVGARSLELLQD 236

Query: 459 QRH-ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                  ++   +        +K    ++ I ++    +  +  +    ++ A      +
Sbjct: 237 AAKLYGASLAASVPYLTGAAGTKLAAFVRLIEQMRADTRQMTLPEIVQHVIHASGLITHY 296

Query: 518 ISRF-GNEVIDVLDEFLNFTLRNEQNS--------------------------------- 543
                G + I+ L E +                                           
Sbjct: 297 QGEKEGLDRIENLQELVTAAQAFVAEEGYGADAIATALPVRHDAMLRIEGGETDGDVVGE 356

Query: 544 ------YSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                    +  L++ L             A  + V++MTVH AKGLE  VVF+      
Sbjct: 357 LVAGEAPMEMTPLVAFLTHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFHVVFITGLEEG 416

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F H++                                          EE  RL+YV +T
Sbjct: 417 LFPHENSL----------------------------------QDTDGLEEERRLMYVAIT 442

Query: 657 RASDQLIIC--------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           RA ++L +                  +         +             +       D 
Sbjct: 443 RARERLYLSFAQSRVLHGQIRYHIRSRFFDELPEATLKWLTPQHAGYSPTRRAQGAQGDS 502

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
               +W                   MD  K         +        +  S       T
Sbjct: 503 AWGRDWFKRPERGDDEAYTGRPTGGMDTGKNYADAKRAAETGFRVGQSVFHSKFGEGVIT 562

Query: 769 NLESLLSDNQT 779
            LE   +D + 
Sbjct: 563 TLEGEGTDARA 573


>gi|308271533|emb|CBX28141.1| hypothetical protein N47_G34650 [uncultured Desulfobacterium sp.]
          Length = 1228

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 138/953 (14%), Positives = 279/953 (29%), Gaps = 161/953 (16%)

Query: 56   ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
                      F    +F   +     K+      +K      + L KS +   +      
Sbjct: 285  LDDRHAGFPIFDKFENFCSEKIGKSTKSKQKIPSHKFFNLCDQLLAKSIEVKAQFDRYII 344

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
              K      A   L         + K+   +  ++DL+    D L   D    +   I  
Sbjct: 345  YLKKTFINYADDKLV--------KRKQSKNIQYYDDLLTKVKDALLSPD-GNDLAVLIRL 395

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +    LIDE QDT  +Q+E+   L +         S    LF +GD KQ+IYSF GA+  
Sbjct: 396  KYKAALIDEFQDTDPVQYEIFSGLFD---------SKDSVLFIIGDPKQAIYSFRGADIF 446

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
              ++  +    + T          L  ++RS+  ++  V+ +FS  +       +  + I
Sbjct: 447  SYIKAAKSVDNKNT----------LIENWRSSPGLIDAVNAIFSGIK--YPFVFEEISFI 494

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
               S      G  +    +     +  +   + +      + + ++  I+   +A  I  
Sbjct: 495  NGVSGHKENYGR-ENETSLSCAPLTLWHLFSDDFIIKNKPVTKNNAQKIICESVASEILR 553

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            ++   T   N   + I+  DI +LVR      ++        +  +I  V      +   
Sbjct: 554  LL---TSSKNDAGKSIKQSDIAILVRTNTQARMVKKSL----SKRRIHSVIYSIDNVFSS 606

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
                +L  +        ++      + + +F  S ++I            + E  Q    
Sbjct: 607  DEATELGRVLAAASDPSNERKIKAAIVTDIFGVSGEEID----SFKNNPLLPEKWQSLFI 662

Query: 476  CGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                 +     I+     +              +     G ++  +         L E L
Sbjct: 663  ECHRLWNKYGFIEMFGYFMKK------ERVKERLALFHDGERRITNLL------HLCEIL 710

Query: 534  NFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            +     +    + L    +E    L Q           +++ V+I+T+H +KGLE  VVF
Sbjct: 711  HKVSIEKTPGINGLIRWFAEQRDVLRQNEEEHLLRLETDNDAVKIVTIHKSKGLEFRVVF 770

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                    +    I+   ++          I   +                K    E  R
Sbjct: 771  CPF----NWHGSEIRDEEVLFHDQSGGRNLILDLEKN------ESSRSIAGKELLSENLR 820

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY--------------DMVYDSFHNDERV 695
            LLYV +TRA ++  +      + E        +              + V D F + +  
Sbjct: 821  LLYVALTRAKEKCYLVWGRINTAETSPMAYLLHYARNNEYDGDKDIINAVKDYFKSQDTD 880

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENT----PLEREETIKQLMDEQKIPKKLFS------ 745
              +   + + K      +     P  T    PL++        +        F       
Sbjct: 881  VLLNDLDKLEKRAGGTIDICVIPPPGTGIYYPLQKSTEQCFARNFTGKIDDTFRISSYSS 940

Query: 746  ------PIKNDINEPYILNPSTIDTKGKTNLESL---LSDNQTFNRGLIIHKLLQVIF-- 794
                     +  +    L     D   + ++       S  +    G   H L + +   
Sbjct: 941  LVASSFAGHDSKDVDAGLRSYLTDFSQEQSISEQTGIFSFPKGARSGTFFHDLFEHMSFL 1000

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE--------------NPMMTTA 840
                  R+  +    T+    + AK   ++   I ++LE                 ++  
Sbjct: 1001 DSDSETRQKLVDDKLTEYG--FGAKWKDSVCSMINKVLEAGLNAYTGSASEEMTIKLSEV 1058

Query: 841  MSCDSYSEVSVSGKINC-----------PKKDIIIS--------------------GRID 869
                  +E+     +                +I I+                    G ID
Sbjct: 1059 SMKQRVNEMEFYFPLKMITPQTIKKIFYDYGNIKINNDYPAWIENLSFSPSQGFMKGYID 1118

Query: 870  QISISQQNIFIFEYKTHHHVPQE---------IEHIPYTHIAQLSIYEKILKD 913
             +  ++  +F  ++K++H               E    ++I Q  +Y   L  
Sbjct: 1119 MVFYAKNKVFFVDWKSNHLGNNYENYEKTSLIEEMDKESYILQYHLYLLALHQ 1171


>gi|188574576|ref|YP_001911505.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
            PXO99A]
 gi|188519028|gb|ACD56973.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
            PXO99A]
          Length = 1357

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 130/937 (13%), Positives = 255/937 (27%), Gaps = 112/937 (11%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK--LKKSQDEFI 108
            + L               L++    +        +    N+K  D      +    D ++
Sbjct: 306  EWLASLWHWFESFAAAPSLNTVPHAKLRKLTAAELAAGTNQKFVDRTPASPMSHEIDGYL 365

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                R   ++  +       L     A     K++  V  ++DL+      L+     A 
Sbjct: 366  TALARVQAWRSRRRIALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGAQADAL 425

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +  ++  +    L+DE QDT   QW +  ++  +  +          LF +GD KQ+IY 
Sbjct: 426  V-ARLRTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLAHAA-GLEPALFLIGDPKQAIYG 483

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F G + +  L            A        L  +FRS   +L  +D +++    +    
Sbjct: 484  FRGGDVRTYL----------AAAVTAEPAPPLSHNFRSRPGVLAAIDALYAQAGYSDAFL 533

Query: 289  EDSTTTIRHRSSRI----------GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
             D       ++                  + LW        S     +            
Sbjct: 534  TDGIAFHPVQAGTKRVDADLQRDGATAPALTLWRAPEPPPPSDAAAAKTKQAGKPKPWSA 593

Query: 339  ESSASILARRIAYTISNMIGTDTI-FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
              +  +        I   +       +    R +QA DI VLVR   +   I      + 
Sbjct: 594  GRARELATAACVAAIRGWLAGGRDGTATINARPVQAGDIAVLVRSHGEATRIQQALGAV- 652

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                I  V   +  L       +L+AL + +L   DD      L + L       I  + 
Sbjct: 653  ---GIPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAAL- 708

Query: 458  TQRHETETVYEYIQKFANCGISKFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                     +   Q+ A     ++Q    +  I +L               +L    G +
Sbjct: 709  ---ERDGERHRRWQQQALDWRERWQRGGPLALIGDLGATHG--------QRLLALVDGER 757

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---SANHNEV 572
            +  +         L E L          +  +  L+  +               ++   V
Sbjct: 758  RLTNYLQ------LAELLQEADARALGPHGLVDWLLRRIANADDNDDAQQLRLESDARRV 811

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +I+T+H +KGLE P+VFL   G         +   +    +               +   
Sbjct: 812  QIVTLHKSKGLEYPLVFLPYIGIGRSDKGAGRHCVVHAPDSGRQLHWKMD----RDDPTW 867

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
            S      K+  + E  RLLYVG+TRA   L I       +E+ +       +        
Sbjct: 868  SAAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGPFHQHERTALAGMLRALDALQGAAG 927

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            E    +  +        +        P     +R    +  +          +    D  
Sbjct: 928  EGAVVVDTSTPPAHLPRLPPPREAQVPPARNPQRHIAPEWWVYSFTQLANADAGAATDPM 987

Query: 753  EPYILNPS----------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP----- 797
                +  S           +     T+ E           G+++H + +           
Sbjct: 988  ASATVVGSGGSDEPSGSEAVAVAVGTDAEPFDPRFAGNRFGVVMHDVFERCDFAAWQVWR 1047

Query: 798  ---EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSY 846
                                 +   E  + L  +T L+ +          +         
Sbjct: 1048 PGQPAPDGQAAPILEALQRGGYAQDELDDGLAMLTALIGHTLTVALPEGRLADVPEPQRR 1107

Query: 847  SEVSVS---------------GKINCPKKDI----------IISGRIDQISISQQNIFIF 881
            +E+                   +                  +++G ID         ++ 
Sbjct: 1108 NEMEFHFAMRPTRVEALLALLHRFGVVGDRQAFGARQRLEGLMTGLIDLTYTVDGRWYVL 1167

Query: 882  EYKTHHHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
            +YK++     + + +        +  Q  IY   L  
Sbjct: 1168 DYKSNRLPSYDADALARAMAHSEYALQALIYTVALHR 1204


>gi|294775536|ref|ZP_06741046.1| UvrD/REP helicase [Bacteroides vulgatus PC510]
 gi|294450586|gb|EFG19076.1| UvrD/REP helicase [Bacteroides vulgatus PC510]
          Length = 1058

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 124/816 (15%), Positives = 259/816 (31%), Gaps = 105/816 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    E   +N       L+ +TN LL        S+++  KI   I +++ID
Sbjct: 340  IRLLANIDEEVRELNHENNRF----LLSDTNALLHNLVKEGDSSFVFEKIGTTIRNVMID 395

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  R L  +                VGD KQSIY +   +   +   K  
Sbjct: 396  EFQDTSRMQWDNFRLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLKTN 449

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +           +  L  + RS A+I+   ++VF+                  +  +  
Sbjct: 450  IEAF------PVKVKTLTTNRRSAANIIHFNNEVFTAACEVLNNIYKEEQKKECKELKEA 503

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   +      +       +        +   +  ++      
Sbjct: 504  YN--------DVCQETYKDPGKGYVKVEFLSDTEDMTYMENTLHHLGEEVELLVAQG--- 552

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +Q KDI +LVRK +  PLI         +    +V ++ F L   LA+  +M 
Sbjct: 553  -------VQLKDIAILVRKNRSIPLIADYFD---KNTSYKIVSDEAFRLDASLAVCMIMD 602

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSED--DIFKICTQRHETETVYEYIQKFANCGISKF 481
              R++   E+ ++   +  +          D+  +     +    +++I++     +   
Sbjct: 603  GLRYLSQPENRIAKAQLAAAYQNEVLHKGIDLNTLLLNEIDDYLPFDFIKEAEQLRLMPL 662

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              +++ +  L  ++                            +    L  F +      Q
Sbjct: 663  YELMEKLFNLFQMSC-------------------------IEQQDAYLCAFFDAVTEYLQ 697

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH- 600
            ++ S L   I+  E+     K   S     +RI+++H +KGLE   V L     ++ +  
Sbjct: 698  SNSSELSAFITYWEEK-LGSKTIPSGEVEGIRILSIHKSKGLEYHTVLLPFCDWKMENET 756

Query: 601  -KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
              H+       +   D  I      +  + +I  +   + +     +   LLYV  TRA 
Sbjct: 757  YNHLVWCAPRQAPFSDLDIVPINYSTAMQQSIYREEFLNERLQLWVDNLNLLYVAFTRAK 816

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
              LII   +           +                     + +    +   E      
Sbjct: 817  KNLIIYGKAEQKGTVSELLGS-------------------ALSDMTGKSYATGEEIYELG 857

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                   EE  +   ++     +        +        S    +     E   ++++ 
Sbjct: 858  TLYLSSHEEEKQVSGNKLLTVARRLPIHLETLETNIEFKQSNRSAEFIRGEEE--TEDKY 915

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
              +G ++H L  VI           I         +  A++ + +       L++P++  
Sbjct: 916  IRQGQLLHNLFSVI--RTTDDVPPAIER-LRFEGIIESAQQEEQIRKLTEWALKHPLVKE 972

Query: 840  AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
              S     E+     I   +K ++ + R D++ +    + + ++K               
Sbjct: 973  WYS--GRWELYNECAIIYREKGVLQTRRPDRVMMKDGEVIVVDFKFGKK--------RKA 1022

Query: 900  HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            +  Q+  Y  +L D      +   L YV   ++  I
Sbjct: 1023 YNKQVKEYMDLLSDMGYEH-IRGYLWYVFNNELEEI 1057


>gi|75760177|ref|ZP_00740235.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492341|gb|EAO55499.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 757

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 88/556 (15%), Positives = 186/556 (33%), Gaps = 57/556 (10%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
           + +D+          I K   L+M    P          +    TL  A++ +     + 
Sbjct: 225 LLEDVKFQLETAEQHIRKATELAMLPDGPAPRVETLQADVALLGTLSSAAR-ESWTSVYE 283

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-------YKMF 120
            + +         +K+   +++ K+   L+ K K    +  +                M 
Sbjct: 284 AMQNVSWQTLKRIKKSDYNEDVVKQVDSLRNKAKDEVKKLQEELFSRKPESFLRDFQDMH 343

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQ 175
                 + L K     ++  K+   ++DF DL      +L ++        + + ++   
Sbjct: 344 PVLEKLVQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEQSENGEMNPSAVAFQYRN 403

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           +   +L+DE QDT+ +Q  +I+ +T+D             LF VGD KQSIY F  AEP 
Sbjct: 404 KFTEVLVDEYQDTNFVQESIIKFVTKDSES-------EGNLFMVGDVKQSIYRFRLAEPG 456

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
             L + +   +     G K   I+L  +FRS  ++L   + +F     E    +  D+  
Sbjct: 457 LFLGKYKRFTQEGLGGGMK---IDLAKNFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADA 513

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
            ++  ++             +    +   + ++           +   A + AR +A  I
Sbjct: 514 ELKLGATYPEGEDVAAELLCIQQTEEEVIDGEEG---------AEVEKAQLEARLMAQRI 564

Query: 354 SNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             M+ +     + K    R +Q +D ++L+R                    I V  +   
Sbjct: 565 KAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSM----PWAPQIMEELKLQGIPVYADLAT 620

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET------- 463
              +   +  +M + R I +   D+    +L+SP+   +++D+  +     +        
Sbjct: 621 GYFEATEVNIMMNVFRVIDNPMQDIPLAAVLRSPIVGLNDEDLATLRAHGKKGSFYEVMS 680

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFG 522
             +     +       K +     +      A+  S  D    + G             G
Sbjct: 681 SFLKGAPLEEEQELHEKLEWFYNLLQGWREFARQQSLSDLIWKVYGETGYYDFVGGLPAG 740

Query: 523 NEVIDVLDEFLNFTLR 538
            +    L    +   +
Sbjct: 741 KQRQANLRVLYDRARQ 756


>gi|90415087|ref|ZP_01223044.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
 gi|90323791|gb|EAS40406.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum
           3TCK]
          Length = 673

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 103/664 (15%), Positives = 213/664 (32%), Gaps = 131/664 (19%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +A   +     F       L ++ T  +    +++ K    L+  +   ++E +   +  
Sbjct: 97  KALGLKANFSLFDDQDQMALLKELTEDELDGDKDLLKL---LQSAISNWKNEMLSAAEAQ 153

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              +  +       L  +    Y+   K    LDF+DLI+    LL+       +R +  
Sbjct: 154 AYAQSERD-----QLFAHCYELYQRQMKAYNALDFDDLILLPVLLLRDD---QEVRQRWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +I ++L+DE QDT+  Q+  ++ L  +                VGD+ QS+YS+ GA+P
Sbjct: 206 NKIRYLLVDEYQDTNTSQYLFVKLLVGE----------RSRFTVVGDDDQSVYSWRGAQP 255

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + +   ++              +I+L  ++RST+ IL   + + +   +    +  S   
Sbjct: 256 ENLGLLQKDFP--------SLRVIKLEQNYRSTSRILRTANILIANNPHLFEKALFSEIP 307

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                                                    +    +    A ++     
Sbjct: 308 -----------------------------------DGEMLKVITAKNEEHEAEKVVGE-- 330

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +I    + + G       KD  +L R    + L            +I    +       
Sbjct: 331 -LIAHRFLNNTG------YKDYSILYRGNHQSRLFEKSL----MQNRIPYKISGGTSFFS 379

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF 473
              IKD+MA  R + + +DD +F+ ++ +P        + K+        ++++    + 
Sbjct: 380 RSEIKDIMAYFRLLTNLDDDNAFLRIVNTPRREIGPVTLEKLGTYANMRGKSLFASSFEL 439

Query: 474 ANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FG 522
                         Q   ++I E+    +          ++                   
Sbjct: 440 GLEQHLAGRGLENLQRFTRWIVEMSENIERGDSVAALRELVRDIHYEDWLYESSPSPKAA 499

Query: 523 NEVIDVLDEFLNFTL-----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
              +  + +  ++        N  N   +L+E++  L       +       ++V++MT+
Sbjct: 500 EMRMKNVSQLYSWVTADLEGDNYDNEVKTLKEIVQRLTLRDMMERGEEDDEADQVQLMTL 559

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE P V+LV     +  H+                                    
Sbjct: 560 HASKGLEFPYVYLVGAEEGILPHQTSVD-------------------------------- 587

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
              +   EE  RL YVG+TRA  +L   +CK      E    + + +            V
Sbjct: 588 ---EGNVEEERRLAYVGITRAQKELTFTLCKERRQYGELIKPEPSRFLYELPQDDLHWDV 644

Query: 696 KKIK 699
           +K  
Sbjct: 645 EKRP 648


>gi|152991783|ref|YP_001357504.1| putative recombination protein RecB [Sulfurovum sp. NBC37-1]
 gi|151423644|dbj|BAF71147.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp.
           NBC37-1]
          Length = 911

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 125/888 (14%), Positives = 277/888 (31%), Gaps = 188/888 (21%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
           + + L+        +       +     K    K +  +E   +    K+      +   
Sbjct: 202 RLEMLKALENAGAPDRCLKQFDTK--NTKELFNKKLFEKETLGEHSWYKKIANGEIEAVY 259

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKKRD 164
               +          +  L     +  +Y+ A     + + VL F DL   T  LL++  
Sbjct: 260 AALKQRLLLWAKAKEMVVLHHLFSIYDYYKNATITNARNSGVLTFNDLSYFTYRLLQEMP 319

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
            S ++ +KID +  HIL+DE QDTS +Q+ +++ L ++ F G+   S  ++ F VGD KQ
Sbjct: 320 SSEFLYFKIDAKFRHILLDEFQDTSTLQFLLLKPLIDEIFSGQG-QSDFKSFFYVGDTKQ 378

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           S+Y F G   +   +  +    +           ++  ++RS+  ++  V+  F      
Sbjct: 379 SLYRFRGGVEELFDKIAQRYGVQIE---------QMDTNYRSSRYVVEQVNLWFKDTM-- 427

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                     +  +S      G V+++E      D+                        
Sbjct: 428 -------EGYVPQKSKTDASEGYVEVFESEEIIDDAVVQA-------------------- 460

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
                      ++             +   DI+ LV   KD        +       I  
Sbjct: 461 ---------QRLLELG----------VDVDDIVFLVSTNKDGQN----LQEACEKEGIHT 497

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
           +      L +   +  L+A                 + S LF   + D            
Sbjct: 498 LLKTSSSLKNVPKVAALVA-----------------MVSYLFGGEKID------------ 528

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
                    A   + K    +  I +L   + F SP      ++                
Sbjct: 529 ---------AEAMLLKVGKTLDRI-DLEWFSVFMSPLQIVDRLIREFGYFDN-------- 570

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
               + + L F             ++ + L+++  +     + + +   IMT+H +KGLE
Sbjct: 571 -DRNMLKLLEFASSF--------SDIPTFLDEFRTSSISVAAHSIHGANIMTIHGSKGLE 621

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V ++D  ++         +           I       +  +   + +++  + S+ 
Sbjct: 622 FEYVIVLDKLTRPN-SDKAPLIFHYNDDLHIDQILYRTQNREHFDGNYARIMEERRASSL 680

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           ++   +LYV +TRA + LI+          K  + + +D +         +        +
Sbjct: 681 KDRKNVLYVALTRAVEGLIVI---------KKPEGSIFDEINIFPIKIGEISVKCPVLGV 731

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
            +++    E  +    +   +   T +   ++                            
Sbjct: 732 KEEKSRGSEVVSVTISDYGTQEVGTKEDEEEKDYE------------------------- 766

Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                             G  +H  L+++    E   K+ + S   +  +L   +    +
Sbjct: 767 --------------AILFGTALHYTLEIMGDFDEQSLKSALVSLRNRYGQLLGHEGLAQI 812

Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              +  L+EN            +E  +  + +   +  +    ID +     ++ + +YK
Sbjct: 813 EKRVRSLIENETFQAL-----LNEAKIMKEQSLSFEGELKQ--IDLLLEYDDHMLVIDYK 865

Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
           +              H AQ++ Y++ ++     K    ++IY+ E K+
Sbjct: 866 SSK-------KYALKHQAQVNYYKRAIEKI-AKKPTEGMIIYLLEDKI 905


>gi|229847480|ref|ZP_04467577.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 7P49H1]
 gi|229809621|gb|EEP45348.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 7P49H1]
          Length = 1211

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 151/982 (15%), Positives = 299/982 (30%), Gaps = 148/982 (15%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248  ESADEILAIITNELEKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
             +FL           T +   K P                 ++     M    L+ LTL 
Sbjct: 308  DYFLQSSIEKNCEESTDKNKDKKPA-----TPFYSPIFAELEKRVNALMTPDLLSKLTLY 362

Query: 131  KYLNAHYEEAKKKNCVLD---------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                 HY +  ++  +LD         F+DL+    + L+       +   I  +    +
Sbjct: 363  -----HYRQGLQQK-LLDYKLNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAM 415

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   Q+ +   +  D                +GD KQ+IY F GA+    L+  
Sbjct: 416  IDEFQDTDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKAS 469

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               Q R            L  ++RS   ++  V+ +F  P++         T +  R   
Sbjct: 470  DEAQSRFE----------LTKNYRSEKHLVDGVNALFDFPQSPFIYQNIKFTAVDSR--- 516

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                      + +    + +  P    + +  D + +   A I A  I + + +      
Sbjct: 517  ---------DDHLRFYLNGKAEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAAENQA 567

Query: 362  IFSNGKKRV-IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +F N   R  +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+
Sbjct: 568  VFQNEDTRKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKE 624

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L  + +  L+   +   +  + + LF  +  DI +I           E   +      ++
Sbjct: 625  LAWVLKACLNVA-ERPILNAIATALFGLNAADIHQIQQN--------EADWQRWADSFAQ 675

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +Q   +    L  + Q          +L    G +             L E L       
Sbjct: 676  YQQTWQRQGILAMLHQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATLH 729

Query: 541  QNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++  + L     +++ +     +    +    V+I+T+H +KGLE  +V+L         
Sbjct: 730  ESESALLSWFEKQIQGEGRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLA----- 784

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                  +        D  I     + ++  +I +  +  L + T  E  RLLYV +TRA 
Sbjct: 785  ------VPSKDPSKKDINIYYSKERDETLWDIENRNLNALCEETFAEELRLLYVALTRAK 838

Query: 660  DQ---------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             Q               L          ++ +   +           ++    +++    
Sbjct: 839  YQMAFALPAQFDKKWNALHYVLSQGEIGKEINLSNSKDTETLLQAFKEKMRDNVEICTKP 898

Query: 705  NKDEWIAYEWSTHHPENTPLE---------------REETIKQLMDEQKIPKKLFSPIKN 749
            N + + A   +T + E    E                 E   +  +      +    + +
Sbjct: 899  NLEAFPALSINTKNDELKAAEFTGNIEQDWRITSFTSIEQGHRRQNYFAESAEKKHAVFD 958

Query: 750  DINEPYILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            D  +    N   I T      ES  L   +    G  +H+  +  +       +      
Sbjct: 959  DAKDYDSQNAIEISTALLNENESNILDLPRGKQVGTALHRHFENCYFSDLANIEEIDKLR 1018

Query: 809  CTKNAKLWPAKEYKNLLLSITRL-LENP---MMTTAMSCDSYSEVSV------------- 851
             +        +  +N L  I+   L +     +    + D   E+               
Sbjct: 1019 QSLQLDETFTEPLQNWLQQISHTPLSHEIGIALADLANKDCIKEMPFYLAIWEHFDVEEF 1078

Query: 852  -----------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ--------- 891
                       S  +   +   ++ G ID +       ++ +YK++              
Sbjct: 1079 NRTLKAHHHLPSEPLQFEQIQGMVRGSIDLVFRHNGKYYLIDYKSNFLGSTLADYNQEAL 1138

Query: 892  EIEHIPYTHIAQLSIYEKILKD 913
            + E +   +  Q  IY   L  
Sbjct: 1139 KKEMLHSHYDWQYLIYTLALHR 1160


>gi|145638900|ref|ZP_01794508.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittII]
 gi|145271872|gb|EDK11781.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittII]
 gi|309750876|gb|ADO80860.1| Exodeoxyribonuclease V, beta subunit [Haemophilus influenzae R2866]
          Length = 1211

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 148/985 (15%), Positives = 308/985 (31%), Gaps = 154/985 (15%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248  ESADEILAIITNELEKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
             +FL           T +   K P +               ++     M    L+ LTL 
Sbjct: 308  DYFLQSSIEKNCEESTDKNKDKKPAMP-----FYSPIFAELEKRVNALMTPDLLSKLTLY 362

Query: 131  KYLNAHYEEAKKKNCVLD---------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                 HY +  ++  +LD         F+DL+    + L+       +   I  +    +
Sbjct: 363  -----HYRQGLQQK-LLDYKLNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAM 415

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   Q+ +   +  D                +GD KQ+IY F GA+    L+  
Sbjct: 416  IDEFQDTDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKAS 469

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               Q R            L  ++RS   ++  V+ +F  P++       + T +  R   
Sbjct: 470  DEAQSRFE----------LTKNYRSEKHLVDGVNALFDFPQSPFIYQNINFTAVDSR--- 516

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                      + +    + +  P    + +  D + +   A I A  I + + +      
Sbjct: 517  ---------DDHLRFYLNGKVEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAAENQA 567

Query: 362  IF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +F +    + +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+
Sbjct: 568  VFQNEDTYKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKE 624

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L  + +  L+   +   +  + + LF  +  DI +I           E   +      ++
Sbjct: 625  LAWVLKACLNVA-ERPILNAIATALFGLNAADIHQIQQN--------EADWQRWADSFAQ 675

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +Q   +    L  + Q          +L    G +             L E L       
Sbjct: 676  YQQTWQRQGILAMLHQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATLH 729

Query: 541  QNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++  + L     +++ +     +    +    V+I+T+H +KGLE  +V+L    +    
Sbjct: 730  ESEAALLSWFEKQIQGEGRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLAA---P 786

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             K   K +I    + +    +W  ++++ N +         + T  E  RLLYV +TRA 
Sbjct: 787  SKDPSKKYINIYYSKERDETLWDIENRNLNALC--------EETFAEELRLLYVALTRAK 838

Query: 660  DQL-----------------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             Q+                 ++ +         S+ +    ++       +   +I    
Sbjct: 839  YQMAFALPAQFDKKWNALHYVLSQGEIGKEINLSDSKDTETLLQTFKEKMQDNVEICTKP 898

Query: 703  SINK----------DEWIAYEWS---THHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
            ++            D++ A E++         T     E   +  +           + +
Sbjct: 899  NLEALPTLSINTKNDDFKASEFTGNIEQDWRITSFTSIEQAHRRQNYFTESAGKKHAVFD 958

Query: 750  DINEPYILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            D  +    N   I T      ES  L   +    G  +H+  +  +       +      
Sbjct: 959  DAKDYDSQNAIEISTALLNENESNILDLPRGKQVGTALHRHFENCYFSDLANTEEIDK-- 1016

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSV---------- 851
              + +        ++L   + ++   P+       +    + D   E+            
Sbjct: 1017 -LRQSLQLDETFTESLQNWLQQISHTPLSNEIGIALADLANKDCIKEMPFYLAIREHFDV 1075

Query: 852  --------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ------ 891
                          S  +   +   ++ G ID +       ++ +YK++           
Sbjct: 1076 EAFNHTLKAHHHLPSESLQFEQIQGMVRGSIDLVFRHNGKYYLVDYKSNFLGSTLADYNQ 1135

Query: 892  ---EIEHIPYTHIAQLSIYEKILKD 913
               + E +   +  Q  IY   L  
Sbjct: 1136 EALKKEMLHSHYDWQYLIYTLALHR 1160


>gi|325673659|ref|ZP_08153350.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707]
 gi|325555680|gb|EGD25351.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707]
          Length = 1106

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 130/894 (14%), Positives = 255/894 (28%), Gaps = 161/894 (18%)

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                ++  A  +    +  K+   + DF+DL    + +L   +       ++      +L
Sbjct: 210  RAGDAVAFATAVRQETQRRKRLAGIRDFDDLPALLHGVLTDPEHGEAACRRVRDRYRVVL 269

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   QW ++R+                TL  VGD KQ+IY+F GAE        
Sbjct: 270  VDEFQDTDPQQWGILRA----------AFHGHSTLVLVGDPKQAIYAFRGAEV------- 312

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                     AG   S  EL  ++RS AD++  +  +      A G  +     +      
Sbjct: 313  ---LSYLDAAGSAHSHQELTTNWRSDADLVAALGHL--HGGAALGHRDIVVHPVSAAKQG 367

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G   L  + +S+  +          +        +  S +A  +A  I  ++G+  
Sbjct: 368  SRLQGAAPLRLRYLSRAGAGR-------LNNSGYPAVGALRSRVAADVAADIVELLGSGA 420

Query: 362  IFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                NG  R ++  D+ +L            L R   +   +  V      + +  A   
Sbjct: 421  TLELNGVTRPVEPGDVAILAGTNAQIA----LVREALDRVGVPSVLAGGTSVFETPAATQ 476

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
             + + + +              +PL  ++  D+                           
Sbjct: 477  WLQVLQALEQPHRPDRVRLAALTPLIGWTAADVDA--------------------RSDEV 516

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV----IDVLDEFLNFT 536
               V   + EL  +         F  +        + ++    E     +  + + L   
Sbjct: 517  VARVGGQLRELATVFAQSGFAALFERLAAESGLEARLLTVASGERTLTDLRHIGQLLGAV 576

Query: 537  LRNEQNSYSSLQELIS----ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
              +E    ++L   ++    + +       R   ++   V+I TVH +KGLE P+V++  
Sbjct: 577  AVDESLGLTALTGWLTDRIKDPKSGGGDRSRRLDSDAAAVQIATVHASKGLEYPIVYVP- 635

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                 F     +       L  D      +      +    D  +        E  RLLY
Sbjct: 636  -----FGWSTGRYADPNRLLLHDEHGRRILDIGGEGSPGYGDRRRRRDAEAAGEDLRLLY 690

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWY------------------DMVYDSFHNDER 694
            V +TRA  QL++      S  +    R  +                   MV +      +
Sbjct: 691  VALTRAQCQLVLWWAPAYSTNEAPLHRMLFGREPGESDVPQKVGVPEDPMVAEQLTRWAQ 750

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               + +       + I     T   E T        ++ +D         +   +    P
Sbjct: 751  AAPVTVEVQAVGADPIPQPSWTPPQEETGELAAAVFRRELDAGWRRTSYTALTASAHEHP 810

Query: 755  YILNPSTIDTKGKTNLESLL--------------SDNQTFNRGLIIHKLLQVIFTLPEHK 800
             + + +          E  L                      G ++H++L+ + T  +  
Sbjct: 811  GVTSEAEEPEIEDEPEEPALITAAPVEGIPSTMNDMPYGAVFGTLVHEILEHVDTAADDL 870

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCDSYSEVSVSGKI 855
                +       A      +   L  ++  +L  P+     +      D   E+     +
Sbjct: 871  ETELVRHCREAVAARMSQVDPVALADALLPVLRTPLAGGGTLADITPRDRLPELDFELPL 930

Query: 856  NCPKKDII----------------------------------------ISGRIDQISI-- 873
                   +                                        ++G ID +    
Sbjct: 931  AGGDDPAVLTVTLHRIVDLLRKHLPPDDVLAPYADRLATLDPTPLRGYLTGSIDAVLRLS 990

Query: 874  --SQQNIFIFEYKTHHHVPQEI------------EHIPYTHIAQLSIYEKILKD 913
                    I +YKT+   P E+            E +   +  Q  +Y   L  
Sbjct: 991  GPDGPRFVIVDYKTNRIAPGEVTTADFTREAMAGEMMRSHYPLQALLYAVALHR 1044


>gi|303276258|ref|XP_003057423.1| ATP-dependent DNA helicase [Micromonas pusilla CCMP1545]
 gi|226461775|gb|EEH59068.1| ATP-dependent DNA helicase [Micromonas pusilla CCMP1545]
          Length = 851

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 98/637 (15%), Positives = 187/637 (29%), Gaps = 156/637 (24%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE   + +  LDF+DL+  T  LLK       +R    Q   H+L+DE QDTSL
Sbjct: 317 AAVYDEYEANLRASNALDFDDLLSATVALLKSSG---PVRQHYQQRWRHVLVDEFQDTSL 373

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+IR L                +F VGD  Q+IYS+ GAE           + +  +
Sbjct: 374 SQYELIRELAL----------PRGQVFVVGDVDQAIYSWRGAEVAN-------IRTKFDD 416

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L  ++RSTA I+     V     +   L  D+              G   +
Sbjct: 417 DFFGADTVMLTKNYRSTATIVKAARAVIGESLSRSPLELDAVQ-----------PGGKDV 465

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                     +                                          +   +  
Sbjct: 466 AVVATEDEVEEAEFAA----------------------------------REAARAARDG 491

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +  K+I VL R    +  +            +  V            IKD +A  R +L+
Sbjct: 492 VPLKEIAVLYRTHHQSRPLEEAF----VRAGVPHVVIGDTAFYTRKEIKDAVAYLRVLLN 547

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-------CTQRHETETVYEYIQKFANCG------ 477
             D +S   ++ +P        + K+              + +   + +           
Sbjct: 548 PRDSVSLARIINTPPRKIGPGTLEKLTTWSDSLPWDDGMPQPLGAALLRRTWANPDQGLE 607

Query: 478 -----------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS- 519
                                 +  + + +L  + +  +P +    ++ +   ++  I  
Sbjct: 608 EDDVLPSAKEMGLGAAAHKSVSNFCRLMRDLEVVMEGSTPGELIEAVVKSTGFKEYLIDQ 667

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSY--------------------SSLQELISELEQYPP 559
             G+E    + E ++                                L + +  +     
Sbjct: 668 ENGDERWGFIKELISIANEPSATDGMDSLEPEDDATAPATPATGEKGLMDFLEGVALLMS 727

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              R+  A  + V++MT+H AKGLE   VF+     ++   +                  
Sbjct: 728 AETRSEDAQADAVKLMTMHVAKGLEFDTVFITGCEDKLIPMESF---------------- 771

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN---EKKS 676
                            +   +   +E  RL YVG+TRA  +L +C+ +  +        
Sbjct: 772 -----------------QKDGREEMDEEVRLFYVGITRAKRKLFLCRSAKRTRFGLTTYP 814

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           +   +  ++ D+       K   +    +   W    
Sbjct: 815 DPSPFLAVIRDALVGGGAAKPPAIPVPTDPRTWPRTA 851


>gi|146343947|ref|YP_001201803.1| putative UvrD helicase [Pseudomonas fluorescens SBW25]
 gi|146187759|emb|CAM96087.1| putative UvrD helicase [Pseudomonas fluorescens SBW25]
          Length = 1121

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 147/957 (15%), Positives = 296/957 (30%), Gaps = 116/957 (12%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLSSFFL 74
            +      +   Q SD+ + ++            + A  +     +    E F   +S+ L
Sbjct: 243  LDAAQQAISLIQGSDLERAMTCLKSASCALDGFEWAAEMPAPIASAKALEYFGQFASYML 302

Query: 75   TQKFTPQ-----------KNIITQEINKKSPDLK-----EKLKKSQDEFIKIRDRFNTYK 118
            T   T +           K+  T E+N    DLK     ++  ++      + +     +
Sbjct: 303  TSTGTLRAKVTVANGFPAKHFCTVEMNGILADLKVNPHSQEYAQALATLATLPELQYPAR 362

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              K       + +YL A+   A +    LDF ++       L   +       + D  I 
Sbjct: 363  SAKMVEHFTVILRYLLANLTLAMEGTNSLDFPEIAQRAIQALGAGETVGDALLEED-RIL 421

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            HI++DE QDT+  Q++++  L E++       +  R++  VGD  QSIY F GA+     
Sbjct: 422  HIMVDEFQDTNQAQYDLLNLLVENW-----EPADNRSIAYVGDGFQSIYLFRGADLNLFT 476

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                          ++  I+ L ++FRS   ++   +        A+   + +   +   
Sbjct: 477  SVVE----AKAFGPKQMDILRLTVNFRSLPGVVEWNNA-----TYAEVFKDSAYEFVPSV 527

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R G  G V +      Q                            A  +   +   + 
Sbjct: 528  AFRKGDGG-VSVHPVATGQ-------------------------IGEAEEVTKVVQEALT 561

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             D             K I +LVR R     I  + +       I V G D   + +   +
Sbjct: 562  KDPS-----------KSIAILVRGRSHLKHILPMLKE----AGIEVRGKDIDPIGEAAPV 606

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             ++++L R +    D  S++ +L++     S  D   +    +  E         A    
Sbjct: 607  SEVISLIRSLWHSADRASWIALLRAAFVGLSWADCLTVARGHNVIENALRDEGVQAQLSS 666

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
                 V++ +  L  + +     +    +           +    E+ DV   F   T  
Sbjct: 667  EGLTRVLRLLEVLDGVKRSSRGSELGWAVKSVWIALGGPATVNTGEMDDVETIFKLLTSH 726

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E       Q     +++         S     V +MT H +KGLE  +V +        
Sbjct: 727  TESGDLIDPQAFFRAIDKAY------ASPKAGAVTVMTCHGSKGLEYDIVLIPGLNKGGA 780

Query: 599  SHKHIK-KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                       M  +         +  +   + +   + + ++K   +E  R  YVG TR
Sbjct: 781  KDDAPLFYFRQMDGVFSVVPNLGDLDTTTPESRLFKFVGRMVRKDISDEVCRAAYVGTTR 840

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A +   +    +            +         ++ +K    + +      I  +    
Sbjct: 841  AKEDCHLFVCVDR-----------FPAAEGEVQKEKEIKPAAGSLAECLWSAIGAQVKAV 889

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
             P    +   ++            K+  P    +         T +       E   SD 
Sbjct: 890  APAFPIVAVTDSGVPSKARLAPSYKVELPKTVFVPAASNDQVPTENELNDELREEEGSDY 949

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNF--------ITSYCTKNAKLWPAKEYKNLLLSIT 829
            +    G++ H  ++ I                   I S   +    +PA E    +  I 
Sbjct: 950  RAKTIGIVYHWFVEQIGKQGIELWDEARVRTKAQAIASMLRREG--FPAAEVPQAVARIL 1007

Query: 830  RLL----ENPMMTTAM--SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
            RLL     +      +     S  EV VS      +    +   +D+        +I +Y
Sbjct: 1008 RLLSNTVNSIHGQWILKKRPGSGHEVQVSA----YRNGRWVHRFLDRPFEDDGVYWISDY 1063

Query: 884  KT-----HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            KT            +      +  ++  YE+ +KD+     +  +L + +  ++  +
Sbjct: 1064 KTPDCPEGMSEDAFVAREVERYRPKMDEYERAVKDAGITIPVKKVLYFPAFDRLAEV 1120


>gi|225375304|ref|ZP_03752525.1| hypothetical protein ROSEINA2194_00929 [Roseburia inulinivorans DSM
           16841]
 gi|225212793|gb|EEG95147.1| hypothetical protein ROSEINA2194_00929 [Roseburia inulinivorans DSM
           16841]
          Length = 611

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/554 (17%), Positives = 181/554 (32%), Gaps = 122/554 (22%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + +   Y E   ++ ++DF+D+++ T +L ++      I     ++  +ILIDE QD 
Sbjct: 161 IFRRIYGEYHEYLHQHKLIDFDDMLVYTYELFRE---RKDILSAWQRKFQYILIDEFQDI 217

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ+++++ L                LF VGD+ QSIY F GA P+ +L  K    +  
Sbjct: 218 NKIQFDIVKMLAA----------PENNLFVVGDDDQSIYRFRGARPELMLHFKDDYPE-- 265

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I L  ++RS  +I+    ++    +                          
Sbjct: 266 ------AEQILLDTNYRSQKEIVEASLRLIGCNKERFQK--------------------- 298

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                      +Q   +   +  +     + +       +I + I   +           
Sbjct: 299 -------KIQANQEAGEPVEYAVFKSQREEIA-------KIIWDIQAHMDRGG------- 337

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRF 427
              + +D  +L R          +      +Y I     D    L +H   KD++A  + 
Sbjct: 338 ---RYEDFAILFRTNTQ----PQMLMEKLLEYNIPFRMKDNVPNLYEHWIAKDIIAYMKI 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +       F+ ++  P    S D + +        E  YE                I+ 
Sbjct: 391 AMGSRYRKDFLKIMNRPKRYISRDSLDEETVAFDVWEWFYE--------DKPWVAERIQR 442

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKG------RQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           +   I +    SP+     I               +      ++ +VL+E  N     + 
Sbjct: 443 LEYDIKMLSTMSPYAAINYIRRGIGYDEFCVEYADYRRMNVEDLYEVLEELQNSAKGFDT 502

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
             Y+   E I         I R  + N   V + T+H++KGLE   V+++D    +    
Sbjct: 503 --YNDWFEHIENYTAELEKIYRQQNQNPESVALATLHSSKGLEYDNVYIIDVNEGIMP-- 558

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                              K +  +  EE  R+ YVGMTRA  +
Sbjct: 559 ---------------------------------YKKAVLDNEVEEERRMFYVGMTRAKKK 585

Query: 662 LIICKHSNTSNEKK 675
           L +      +++  
Sbjct: 586 LHLYSIEQLNHKNT 599


>gi|301170069|emb|CBW29673.1| exonuclease V (RecBCD complex), beta subunit [Haemophilus influenzae
            10810]
          Length = 1211

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 139/976 (14%), Positives = 293/976 (30%), Gaps = 136/976 (13%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248  ESADEISAIITNELVKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71   SFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             +FL         +     ++    +P       + +     +       K+        
Sbjct: 308  DYFLQSSIEKNCEESTDKNKDKKTATPFYSPIFAELEKRVNALMTPDLLSKL-----TLY 362

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               + L     + K  +    F+DL+    + L+       +   I  +    +IDE QD
Sbjct: 363  HYRQGLQQKLLDYKFNHQEKSFDDLLRLLCEALQG-AQGDELAEMIRFQYPFAMIDEFQD 421

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T   Q+ +   +  D                +GD KQ+IY F GA+    L+     Q R
Sbjct: 422  TDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSR 475

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                        L  ++RS  +++  V+ +F  P++       + T +  R         
Sbjct: 476  FE----------LTKNYRSEKNLVDGVNALFDFPQSPFIYQNINFTAVDSR--------- 516

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-SNG 366
                + +    + +  P    + +  D + +   A I A  I + + + +    +F +  
Sbjct: 517  ---DDHLRFYLNGKAEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAVENQAVFQNED 573

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              + +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+L  + +
Sbjct: 574  TCKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKELAWVLK 630

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
              L+   +   +  + + LF  +  DI +I           E   +      +++Q   +
Sbjct: 631  ACLNVA-ERPILNAIATALFGLNAADIHQIQQN--------EADWQRWADSFAQYQQTWQ 681

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                L  + Q          +L    G +             L E L       ++  + 
Sbjct: 682  RQGILAMLYQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATLHESEAAL 735

Query: 547  LQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L     +++ +     +    +    V+I+T+H +KGLE  +V+L             K 
Sbjct: 736  LSWFEKQIQGEGRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLA-VPSKDPSKKD 794

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662
            ++I  S   D  +     ++          +  L + T  E  RLLYV +TRA  Q+   
Sbjct: 795  INIYYSKERDETLWDMENRN----------LNALCEETFAEELRLLYVALTRAKYQMAFA 844

Query: 663  -------------IICKHSNTSNEKKSNQRTWYDMVY-------------DSFHNDERVK 696
                          +        E   ++    + +               +  N E   
Sbjct: 845  LPAQFDKKWNALHYVLSQGEIGKEINLSESKDTETLLQTFKEKMRDNVEICTKPNLEAFP 904

Query: 697  KIKLTNSINKDEWIAYEWS-THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             + +    +  +   +  +       T     E   +  +           + +D  +  
Sbjct: 905  TLSINTKNDDLKAAEFTGNIEQDWRITSFTSIEQAHRRQNYFTESAGKKHAVFDDAKDYD 964

Query: 756  ILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
              N   + T      ES  L   +    G  +H+  +  +       +       +    
Sbjct: 965  SQNAIEMSTALLNENESNILDLPRGKQVGTALHRHFENCYFSDLANTEEIEKLRQSLQLD 1024

Query: 815  LWPAKEYKNLLLSITRL-LENP---MMTTAMSCDSYSEVSV------------------- 851
                +  +N L  I+   L +     +    + D   E+                     
Sbjct: 1025 ETFTEPLQNWLQQISHTPLSHEIGIALADLANKDCIKEMPFYLAIREHFDVEAFNHTLKA 1084

Query: 852  -----SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIP 897
                 S  +   +   ++ G ID +        + +YK++              + E + 
Sbjct: 1085 HHHLPSEPLQFEQIQGMVRGSIDLVFRHNGKYCLVDYKSNFLGSTLADYNQEALKKEMLH 1144

Query: 898  YTHIAQLSIYEKILKD 913
              +  Q  IY   L  
Sbjct: 1145 SHYDWQYLIYTLALHR 1160


>gi|225621491|ref|YP_002722750.1| UvrD/REP helicase [Brachyspira hyodysenteriae WA1]
 gi|225216312|gb|ACN85046.1| UvrD/REP helicase [Brachyspira hyodysenteriae WA1]
          Length = 1131

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 141/883 (15%), Positives = 295/883 (33%), Gaps = 111/883 (12%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +  N K  + +  L+  +   + + +  N     ++  A +   K    H E+ K    +
Sbjct: 284  KLGNTKHDEFRAVLEDLKQCTVSMLNYVNILYNEENYKAVIDFIKETYNHIEKVKSNIGI 343

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
               ED++    + L+   +S  IR  I      +++DE QDTS++Q++ I  +       
Sbjct: 344  YSHEDMMYKAIEALENDAISKEIRDNISS----LILDEAQDTSILQFDFINLIVFGQREI 399

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
             +   + + L  VGD KQSIY F  A+       +               +  L  ++RS
Sbjct: 400  TSNSKTDKKLMIVGDRKQSIYRFRNADVNAFTNTQENFSNY---------VRYLKDNYRS 450

Query: 267  TADILTVVDKVFSI-PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
             + ++   + +F         ++      + +      +   V L     +  D      
Sbjct: 451  NSMLIDFFNDLFKSTVFVNDDINYKDEDDLDYNKKTENK--AVSLLIFNNNIEDENI--- 505

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                      L  +    + A  IA  I N    D             K+ ++L++  K 
Sbjct: 506  ---------HLYADDKTELEAYAIAEYIKNNYSDD------------YKNTVILLQTFK- 543

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
               +    + L +DYKI    +          I  +     +++   D      +L+S L
Sbjct: 544  --RLDKYLQAL-SDYKIPYYIDGGNKFYSREEIVLIKTFLEYLIL-RDHAKLPEILRSEL 599

Query: 446  FNFSEDDIFKICTQ----------------RHETETVYEYIQKFANCGISKFQHVIKYIH 489
            F+    ++                        E +         +    ++ +   + ++
Sbjct: 600  FDIDIGNLSDFLFSLYVKNLDIKDYFPKMVYDENKYKEIEDIAKSKSYYNQLKTAKEILN 659

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQ 548
             +       + ++    I          ++    E     +++        E  + +++ 
Sbjct: 660  NIESKIPMMNANEIIETICIDTNFYNYLMTMNDAEISYANIEKLKKIANDFENQTGNNIY 719

Query: 549  ELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            + +  L+        +     +   V+IMT+H +KGLE   VF+   G+ +        +
Sbjct: 720  DFVLNLKNTNDNEPYSAIPKLSVESVKIMTIHKSKGLEFNNVFVAGMGNYI-----RSYL 774

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                 + D P I + +       +  +      KKS   E  RLLYV +TRAS+ LI+  
Sbjct: 775  SDFDFIEDSPFIRLPVRNKHYNIDFSASNTDDNKKSETSEKRRLLYVALTRASNNLILSG 834

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
              +     +S    +++     +  +   +  +    I+  E    +  ++     P E 
Sbjct: 835  EHSKGESYRSYLNKYFNDEIKKYEYNIISEDTEGLIKIDDIENKFIDSYSYGLAIKPEEE 894

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINE----------------PYILNPSTIDTKGKTNL 770
               I     ++KI        K + +E                   +N S +  +  + L
Sbjct: 895  INIIDSQTIKEKIKNISKENKKVNYSEYIKNINPSLNKNNKLSKNYVNISDLLNRQISKL 954

Query: 771  E-----------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----YCTKNAK 814
            E             +      + G IIHK+L+        K K              N  
Sbjct: 955  ENDINNTDNEYNEDIELISYKDIGTIIHKMLEYFNFDKYIKEKEAYLEKVKSYTLKSNNH 1014

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS 874
                +  ++L  +  +L EN  +   ++ +    VS            +I+G+ID   I+
Sbjct: 1015 YSKEQLTESLNTAFKKLFENNHIKNILNGNEEI-VSREHTFQHYDGKDLITGKID--IIT 1071

Query: 875  ---QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                   +I +YK    V +E E+    +  QL+ Y+ + ++ 
Sbjct: 1072 KNKNDEYYILDYK----VAEESEYNINKYQYQLNSYKFMFEEV 1110


>gi|291562492|emb|CBL41308.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [butyrate-producing
           bacterium SS3/4]
          Length = 656

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/648 (14%), Positives = 195/648 (30%), Gaps = 80/648 (12%)

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
           G+   ++ KDI++L+R              +     I    + R      + ++ ++ + 
Sbjct: 9   GEYEPLKKKDIVILLRSLSGWS---EEFLSVLGAAGIPAYADSRTGYFTAVEVETVLNML 65

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT------QRHETETVYEYIQKFANCGIS 479
             I +   D+    +LKSP+    + ++  +         R E    Y  ++++      
Sbjct: 66  ALIDNPMQDIPLAGVLKSPIGGMKDRELAIVMAEFKKNPDRGEDVGFYGAVKRYLEKHGE 125

Query: 480 ---------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVL 529
                    K       +  L   + +         I       +   +   G      L
Sbjct: 126 SEEDAVIYRKLAAFQNLLTTLREESMYLPVSRLIYRIFDLTGYDKYAAAMPAGKTRQANL 185

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLE 584
              +      E+ SY  L + I  +E+                + + VRIM++H +KGLE
Sbjct: 186 AMLVQKAEDYEKTSYQGLFDFIRYIEKLKKYNTDFGEASRSGEHDDAVRIMSIHKSKGLE 245

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVVFL   G +        ++ I   L           + K+     + L +       
Sbjct: 246 FPVVFLAGCGKKFNRQDARGRILIDEELGIAADFFDPEKKVKAPTLKKNVLARRSNLENM 305

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR---------------TWYDMVYDSF 689
            E  R+LYV MTRA ++LII       + K                        + +   
Sbjct: 306 GEELRILYVAMTRAKEKLIITAGDKYMDSKLEKWGGIPAGGALPFTILSAASSYLDWILM 365

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
            +      + + N   K+  +    +        LE E+  K+  +E      +  P   
Sbjct: 366 ASSGAKNTLDVKNVPVKELLVEEAKNQEEKAKIYLELEQLRKEQPEEIPGLIGVKYPYAA 425

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDN----------------------------QTFN 781
           D+     ++ S +  +G+   ++  +                              +  +
Sbjct: 426 DLALHAKMSVSELKEQGQFVDDAESAFLIKNVREKEDSEIIDKVSDTAAEEKARIKRASD 485

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
           RG   H+ L++I         + +      +  K         +   +     +  +   
Sbjct: 486 RGTAYHRALELIHFAEISGYDDIVKELDRIREEKRMQETAIDMVYPGVLMKFFHSDIAAR 545

Query: 841 MSCDSYS-----EVSVSGKINCPKKD-------IIISGRIDQISISQQNIFIFEYKTHHH 888
           M     +     E      I   + +       I++ G ID        + + +YKT   
Sbjct: 546 MKQADRNGKLRKESQFVVGIPAREMNKADSDALILLQGIIDAWFEEDDGLVLVDYKTDRV 605

Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
                  +   +  QL  Y K L      K    ++  ++  K   +P
Sbjct: 606 KEDGENILLDRYQIQLFYYAKALAQITGKKVKEAVIYSLALQKEIPVP 653


>gi|58584093|ref|YP_203109.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
 gi|58428687|gb|AAW77724.1| exodeoxyribonuclease V beta chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
          Length = 1366

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 130/937 (13%), Positives = 255/937 (27%), Gaps = 112/937 (11%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK--LKKSQDEFI 108
            + L               L++    +        +    N+K  D      +    D ++
Sbjct: 315  EWLASLWHWFESFAAAPSLNTVPHAKLRKLTAAELAAGTNQKFVDRTPASPMSHEIDGYL 374

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                R   ++  +       L     A     K++  V  ++DL+      L+     A 
Sbjct: 375  TALARVQAWRSRRRIALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGAQADAL 434

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +  ++  +    L+DE QDT   QW +  ++  +  +          LF +GD KQ+IY 
Sbjct: 435  V-ARLRTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLAHAA-GLEPALFLIGDPKQAIYG 492

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F G + +  L            A        L  +FRS   +L  +D +++    +    
Sbjct: 493  FRGGDVRTYL----------AAAVTAEPAPPLSHNFRSRPGVLAAIDALYAQAGYSDAFL 542

Query: 289  EDSTTTIRHRSSRI----------GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
             D       ++                  + LW        S     +            
Sbjct: 543  TDGIAFHPVQAGTKRVDADLQRDGATAPALTLWRAPEPPPPSDAAAAKTKQAGKPKPWSA 602

Query: 339  ESSASILARRIAYTISNMIGTDTI-FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
              +  +        I   +       +    R +QA DI VLVR   +   I      + 
Sbjct: 603  GRARELATAACVAAIRGWLAGGRDGTATINARPVQAGDIAVLVRSHGEATRIQQALGAV- 661

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                I  V   +  L       +L+AL + +L   DD      L + L       I  + 
Sbjct: 662  ---GIPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAAL- 717

Query: 458  TQRHETETVYEYIQKFANCGISKFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                     +   Q+ A     ++Q    +  I +L               +L    G +
Sbjct: 718  ---ERDGERHRRWQQQALDWRERWQRGGPLALIGDLGATHG--------QRLLALVDGER 766

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---SANHNEV 572
            +  +         L E L          +  +  L+  +               ++   V
Sbjct: 767  RLTNYLQ------LAELLQEADARALGPHGLVDWLLRRIANADDNDDAQQLRLESDARRV 820

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +I+T+H +KGLE P+VFL   G         +   +    +               +   
Sbjct: 821  QIVTLHKSKGLEYPLVFLPYIGIGRSDKGAGRHCVVHAPDSGRQLHWKMD----RDDPTW 876

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
            S      K+  + E  RLLYVG+TRA   L I       +E+ +       +        
Sbjct: 877  SAAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGPFHQHERTALAGMLRALDALQGAAG 936

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            E    +  +        +        P     +R    +  +          +    D  
Sbjct: 937  EGAVVVDTSTPPAHLPRLPPPREAQVPPARNPQRHIAPEWWVYSFTQLANADAGAATDPM 996

Query: 753  EPYILNPS----------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP----- 797
                +  S           +     T+ E           G+++H + +           
Sbjct: 997  ASATVVGSGGSDEPSGSEAVAVAVGTDAEPFDPRFAGNRFGVVMHDVFERCDFAAWQVWR 1056

Query: 798  ---EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSY 846
                                 +   E  + L  +T L+ +          +         
Sbjct: 1057 PGQPAPDGQAAPILEALQRGGYAQDELDDGLAMLTALIGHTLTVALPEGRLADVPEPQRR 1116

Query: 847  SEVSVS---------------GKINCPKKDI----------IISGRIDQISISQQNIFIF 881
            +E+                   +                  +++G ID         ++ 
Sbjct: 1117 NEMEFHFAMRPTRVEALLALLHRFGVVGDRQAFGARQRLEGLMTGLIDLTYTVDGRWYVL 1176

Query: 882  EYKTHHHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
            +YK++     + + +        +  Q  IY   L  
Sbjct: 1177 DYKSNRLPSYDADALARAMAHSEYALQALIYTVALHR 1213


>gi|304312501|ref|YP_003812099.1| ATP-dependent exoDNAse (exonuclease V) β-subunit (contains
            helicaseand exonuclease domains) [gamma proteobacterium
            HdN1]
 gi|301798234|emb|CBL46456.1| ATP-dependent exoDNAse (exonuclease V) β-subunit (contains
            helicaseand exonuclease domains) [gamma proteobacterium
            HdN1]
          Length = 1272

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 127/1017 (12%), Positives = 287/1017 (28%), Gaps = 168/1017 (16%)

Query: 28   VSDINKYVSLSMETGN--PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
              DI  YV  ++++G       K+A   +                S   ++     K   
Sbjct: 241  GDDIAGYVEEALKSGALNKKTYKEAALYENLLLLLEWARSPENTPSVGPSEIGKLLKFWS 300

Query: 86   TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
              E+ +K+   K        ++I                  L    ++       K +  
Sbjct: 301  YNELKRKTNKGKAACPPDVLKYID-EHLEKKSDDEIKHDYLLHAVNWVRKRMVHEKAQRS 359

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
             + F+DLI +    L   +  + +   +       +IDE QDT   Q+   R++  D   
Sbjct: 360  AMYFDDLINDVESALTAPN-GSSLATLLRDRFPVAMIDEFQDTDQTQYSSFRAIYADSSD 418

Query: 206  GKN-----------------THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
                                  +    L  +GD KQ+IYSF GA+    L+ ++      
Sbjct: 419  QDRYDQDSSDQDSSKQDSSRQDNRQCALLLIGDPKQAIYSFRGADIFTYLQARKD----- 473

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                       L  ++RS   ++  V+ +FS+            + I           + 
Sbjct: 474  ----THGKHYTLDTNYRSVDTLIRGVNALFSMNLRQLKGEAFIFSDIPFLPVNSAPAKSS 529

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT------I 362
             +W     +  +          S  +   +      LA + A TI  ++           
Sbjct: 530  FVW---NDKEIADLCFWTYDAASPEEVFTKGEYQMQLAAKTANTIVELLQASQCGRAYFR 586

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
              +GK+  ++A DI +LVR R +  ++      L+     SV  + R  +        L+
Sbjct: 587  SQDGKETPLKAADIAILVRSRGEASVMRD---ALELANVRSVYLSQRDSVFASAEANTLL 643

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
                 +   E++      L +P    S+ ++  +                        ++
Sbjct: 644  VWMDAVAQPENERLLRAALATPHLYRSDANLDDLLRD------------------EIAWE 685

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV---LDEFLNFTLRN 539
              +++  +L               ++         +      V+     L E+L     +
Sbjct: 686  ETLEFFKQLRADWLKHGVLPMVRRLMQRYDVANHLLHERKERVLTNFLHLSEWLQTAAAS 745

Query: 540  EQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                ++ ++ L  ++      Q          ++   ++I+T+H +KGLE P+VFL    
Sbjct: 746  LDGEHALIRLLRDKIRSAKLGQDTEENVLRLESDEQLLKIITIHKSKGLEYPLVFLPFAS 805

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            +              P    D      +  +     +     +   +    E  RL YV 
Sbjct: 806  NAGHPDD-------APFAWHDAQDQRRVLWNYDPEKLKEKATEAFLREKLAEDLRLFYVA 858

Query: 655  MTRASDQLIICK---------------------HSNTSNEKKSNQRTWYDMVYDSFHN-- 691
            +TRA     +                           + ++      +   +        
Sbjct: 859  VTRARHACWVGAAPVGKKPTKDKSECLLENNVLAWLLAGKQSLTLAEYQQALKHFSGTSN 918

Query: 692  ---DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                +  + + L ++ ++  + + E      E    ++ E    ++          + I 
Sbjct: 919  PIVLQATQFLDLEDASSRQIFHSGEQVCALQEVRQAQKREAQGWIITSYTGIVWGKTSIS 978

Query: 749  NDINEPYI---------------LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
            +  +                     PS      +     + S       G  +H LL+  
Sbjct: 979  SSADSAKEGNVQEESHLQENVQNSTPSGEAEIAQAPPRDIHSFPAGAAPGTFLHSLLEWA 1038

Query: 794  FTL----------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT---- 839
                          + K  + +  + ++  +    +  + L   +   L+ P+       
Sbjct: 1039 GNYGFRRLIEDAKDQDKAASLMEQFQSQCERYQYIEWQEVLWPWMIAFLQTPLNQPSEPF 1098

Query: 840  ----AMSCDSYSEVSVSGKINC-------------------------PKKDIIISGRIDQ 870
                        E+     ++                           + + ++ G ID 
Sbjct: 1099 SISTLSRLQYQVEMEFLLSLSAFHQQTLDRMICESEYPGIARPQLMRRQVEGMLKGFIDL 1158

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
            +       ++ +YK+++       + P           +  Q  +Y   L      +
Sbjct: 1159 VCEHAGRYYVVDYKSNYLGADRSAYTPAAMQKAILEHRYDVQYVLYTIALHRLLKIR 1215


>gi|46128055|ref|XP_388581.1| hypothetical protein FG08405.1 [Gibberella zeae PH-1]
          Length = 1060

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 104/696 (14%), Positives = 193/696 (27%), Gaps = 158/696 (22%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+    ++ +LD++DL++   +LL+               +  +LIDE QDT+ IQ+
Sbjct: 177 YEEYQAQLTRSNLLDYDDLLVKCVELLRDHPACV-------SNVQTVLIDEYQDTNGIQY 229

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+++   +          + + +  VGD  QSIY +  AE K + R  R           
Sbjct: 230 ELMKLFAQ----------AKQRITIVGDPDQSIYGWRSAEVKNLFRLLREYPNTDE---- 275

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I L  ++RS+  IL V   V                T   R               
Sbjct: 276 ----ISLEENYRSSQSILDVSLTVIQQDTKRYKKVLLPVHTKGARPV------------- 318

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 L    S+S     I   I   +            +++ 
Sbjct: 319 ----------------------LRSLKSSSAEGEWIVSEIKRAV-------MMFGDMLKF 349

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           +D+ +L+R    +  I            ++          +   IK L+   R +   ++
Sbjct: 350 EDVAILLRSAALSRHIESAL----GKAGVAYRMIGGHKFYERKEIKVLIDYLRVVSQPDN 405

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFANCGISKFQ---------- 482
           + +   ++  P     E  +  +  +  +++ +++  I K                    
Sbjct: 406 NDALARIINVPRRGIGEATVKALIEEAEQSDMSLWTLILKHCRGNRKAKANIRPKMEQKL 465

Query: 483 --HVIKYIHELIHIAQFCS------PHDFFTLILGAKKGRQQF---ISRFGNEVIDVLDE 531
              +I+ I  L   A   S        +    +L     ++      +    +    + E
Sbjct: 466 NTELIRTITSLQKQASEISQSSPVTLVNLIEQLLTHLDFKKYLEEEYTEEHEQRWANVQE 525

Query: 532 FLNFTLRNEQN----------SYSSLQE------LISELE----QYPPTIKRAHSANHNE 571
           F+N      ++             +L +      L   L           K   +   + 
Sbjct: 526 FVNLVSDFMKDFGAPDEDALPEIDNLDQVKVDDMLGRFLANVALASDAQNKGDTTEQKSL 585

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V I T+H AKGLE PVVF+    +    H                               
Sbjct: 586 VTISTIHAAKGLEWPVVFVPSVYTGSIPHSRS---------------------------- 617

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        +E  RLLYV MTRA   L +      S    S       +   +   
Sbjct: 618 ----------EDTDEERRLLYVAMTRAKALLYLSCPLYGSQGLSSKVELSPFVAPFASKV 667

Query: 692 DERVKKIKLTNSIN-------KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
             +         +        +D           P    +E +       D + + +   
Sbjct: 668 FAKKGPSFDRAVVEGVAKILGRDAPSEKTVFGKLPPMFSVEDDRFPVDPADHKNVERIDE 727

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
              +     P     S   T    + E         
Sbjct: 728 ESGRQYSRAPKRQRVSHPTTSYDESDELPWQREYAT 763


>gi|153853340|ref|ZP_01994749.1| hypothetical protein DORLON_00738 [Dorea longicatena DSM 13814]
 gi|149754126|gb|EDM64057.1| hypothetical protein DORLON_00738 [Dorea longicatena DSM 13814]
          Length = 613

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/599 (17%), Positives = 194/599 (32%), Gaps = 119/599 (19%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           ++ + K+ L++   E   +++     + ++    +    + L   YEE KKK   +DFED
Sbjct: 126 EADEEKDYLQELAIEIGNVKNNCMDIEEYEPVKYTTEKFRKLYRTYEETKKKYRKIDFED 185

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           ++I   DL  K      I  K  ++  +IL+DE QD +  Q++V+R L            
Sbjct: 186 MLIQCRDLFMK---RPDILKKWQEKFQYILVDEFQDVNQAQYDVVRMLAA---------- 232

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               LF VGD+ QS+Y F GA+P  +    +   K           I L +++RS+  I+
Sbjct: 233 PQDNLFVVGDDDQSVYGFRGAKPGIMKEFMKDYPK--------ARQILLDVNYRSSGYIV 284

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               +V    +       ++                                        
Sbjct: 285 KGALRVIGNNKIRFEKKIEAFRKP-----------------------------------D 309

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
               + +       A  +   I                 +   ++ VL R   D   ++ 
Sbjct: 310 ETVHVQEVKDPVQEAEYVLERIREYREKG----------VSYTEMAVLYRTNVDARAMSE 359

Query: 392 LTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
               L  +Y+I  V  +    + +H    D+++  R    + D   F+ +   P    + 
Sbjct: 360 ----LMTEYQIPFVMKEHLNNIYEHFIALDMISYLRLSQGEYDRKYFLQIANRPNRYLTR 415

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           +    + T     E++  Y +             I  +   + +    +P+     I   
Sbjct: 416 ES---MKTGNVSYESLRRYYRDKDWMV-----DRIDQLEWDMKMICDKTPYAAIQYIRKR 467

Query: 511 KKGRQQFI--SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHS 566
               +     + +     + L   L    +     Y +++E    +E Y      +   +
Sbjct: 468 MGYDEFLKEYAAYRKISSEDLFAVLEEIWQ-NSKGYGTIKEWFEHIESYGKMLKEQNKKN 526

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                V +MT+H AKGLE   VF+++                                  
Sbjct: 527 GEKEGVNLMTMHAAKGLEFDTVFVIEANEGSCP--------------------------- 559

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                     K       EE  RL YV MTRA  +L+I      + +     R   +++
Sbjct: 560 --------YKKATANEEIEEERRLFYVAMTRAKRKLVISYVKEKNGKDLLPSRFVSELL 610


>gi|255020927|ref|ZP_05292983.1| ATP-dependent DNA helicase Rep [Acidithiobacillus caldus ATCC
           51756]
 gi|254969718|gb|EET27224.1| ATP-dependent DNA helicase Rep [Acidithiobacillus caldus ATCC
           51756]
          Length = 663

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 96/645 (14%), Positives = 205/645 (31%), Gaps = 115/645 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + ++     +  +  Q    K ++  +  +          LA+ +   Y+ A K    
Sbjct: 123 RNLLREMQGPSDLAESIQARISKAKNDGHGPEDMPIRDRLDELAQRVYRPYQRALKACNS 182

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +D +DLI+   +LL +   +   + +  + I ++L+DE QD++  Q+ ++++L +     
Sbjct: 183 VDLDDLILLPTELLSRFAEA---QERWQERIRYLLVDEYQDSNGAQYRLLQNLLK----- 234

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                  + L AVGD+ QSIYS+ GA    + R  +              +I+L  ++RS
Sbjct: 235 -----KRQNLTAVGDDDQSIYSWRGAAADNLQRLAQDFP--------DLRLIKLEQNYRS 281

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  IL   + + +   +                          LW  +      Q    +
Sbjct: 282 TGRILQAANHLIAHNPHLFEKK---------------------LWSSLGEGDRIQVIVAR 320

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           +               +  A ++   I           +  +R  + +D  +L R    +
Sbjct: 321 D--------------ETDEAEQVVNAILR---------DRFQRQGEYRDYAILYRSNHQS 357

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                  R    + +I    +      +   I+D +A  R + + +DD +F+  + +P  
Sbjct: 358 RPFETALR----NARIPYQLSGGISFFERSEIRDFLAYCRLLANPDDDAAFLRAVNTPRR 413

Query: 447 NFSEDDIFKICTQRHETET-----VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
                 +  +       +      ++E     A   +   +    +++            
Sbjct: 414 GIGSATLETLGEHAKARQMSLFAALWEEDLDLAERPLLALRSFGDWLNRTAEACARSELM 473

Query: 502 DFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNFTLR--NEQNSYSSLQELISELE 555
                +L     R+   +           + L+E L +  R   +++   +L EL++ L 
Sbjct: 474 PTLRDLLEEIGYRRYLENEGDEREARRKWENLEELLAWMARLLEQEDGPKNLAELLNRLS 533

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                 +       + +R+ T+H AKGLE   VFLV    ++  H               
Sbjct: 534 VIHILERDEDDEERDVLRLSTLHGAKGLEFSRVFLVGVEEELLPH--------------- 578

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                     +  EE  RL YVG+TRA  +L +          +
Sbjct: 579 --------------------RNSETPAQIEEERRLFYVGVTRARHKLSLSYCRRRKRYGE 618

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +        + +                                +
Sbjct: 619 AQAPEPSRFLQELPRELLDWASGAEEQEALSATAACSRLRALLDD 663


>gi|265753493|ref|ZP_06088848.1| ATP-dependent helicase [Bacteroides sp. 3_1_33FAA]
 gi|263235207|gb|EEZ20731.1| ATP-dependent helicase [Bacteroides sp. 3_1_33FAA]
          Length = 1058

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 124/817 (15%), Positives = 262/817 (32%), Gaps = 107/817 (13%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    E   +N       L+ +TN LL        S+++  KI   I +++ID
Sbjct: 340  IRLLANIDEEVRELNHENNRF----LLSDTNALLHNLVKEGDSSFVFEKIGTTIRNVMID 395

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW   R L  +                VGD KQSIY +   +   +   K  
Sbjct: 396  EFQDTSRMQWNNFRLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLKTN 449

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +           +  L  + RS A+I+   ++VF+                  +  +  
Sbjct: 450  IEAF------PVKVKTLTTNRRSAANIIHFNNEVFTAACEVLNNIYKEEQKKECKELKEA 503

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   +      +       +        +   +  ++      
Sbjct: 504  YN--------DVCQETYKDPGKGYVKVEFLSDTEDMTYMENTLYHLGEEVELLVAQG--- 552

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +Q KDI +LVRK +  PLI         +    +V ++ F L   LA+  +M 
Sbjct: 553  -------VQLKDIAILVRKNRSIPLIADYF---DKNTSYKIVSDEAFRLDASLAVCMIMD 602

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSED--DIFKICTQRHETETVYEYIQKFANCGISKF 481
              R++    + ++   +  +          D+  +     +    +++I++     +   
Sbjct: 603  GLRYLSQPGNRIAKAQLAAAYQNEVLHKGIDLNTLLLNEIDDYLPFDFIKEAEQLRLMPL 662

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              +++ +  L  ++                            +    L  F +      Q
Sbjct: 663  YELMEKLFNLFQMSC-------------------------IKQQDAYLCAFFDAVTEYLQ 697

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH- 600
            ++ S L   I+  E+     K   S     +RI+++H +KGLE   V L     ++ +  
Sbjct: 698  SNSSELSAFITYWEEK-LGSKTIPSGEVEGIRILSIHKSKGLEYHTVLLPFCDWKMENET 756

Query: 601  -KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
              H+       +   D  I      +  + +I  +   + +     +   LLYV  TRA 
Sbjct: 757  YNHLVWCAPRQAPFSDLDIVPINYSTAMQQSIYREEFLNERLQLWVDNLNLLYVAFTRAK 816

Query: 660  DQLIICKHSNTSNE-KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
              LII   +       +       DM   S+   E + ++      + +E          
Sbjct: 817  KNLIIYGKAEQKGTVSELLGNALSDMTGKSYATGEEIYELGTLYLSSHEE---------- 866

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                        ++ +   K+         +       +     +   +       ++++
Sbjct: 867  ------------EKQVSGNKLLTVARRLPIHLETLETNIEFKQSNRSAEFIRGEEETEDK 914

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               +G ++H L  VI           I         +  A++ + +       L +P++ 
Sbjct: 915  YIRQGQLLHNLFSVI--RTTDDVPPAIER-LRFEGIIESAQQEEQIRKLTEWALRHPLVK 971

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
               S     E+     I   +K ++ + R D++ +    + + ++K              
Sbjct: 972  EWYS--GRWELYNECAIIYREKGVLQTRRPDRVMMKDGEVIVVDFKFGKK--------RK 1021

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             +  Q+  Y  +L D      +   L YV   ++  I
Sbjct: 1022 AYNKQVKEYMDLLSDMGYEH-IRGYLWYVFNNELEEI 1057


>gi|312139063|ref|YP_004006399.1| exodeoxyribonuclease v beta subunit recb [Rhodococcus equi 103S]
 gi|311888402|emb|CBH47714.1| exodeoxyribonuclease V beta subunit RecB [Rhodococcus equi 103S]
          Length = 1103

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 129/891 (14%), Positives = 253/891 (28%), Gaps = 158/891 (17%)

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                ++  A  +    +  K+ + + DF+DL    + +L   +       ++      +L
Sbjct: 210  RAGDAVAFATAVRQETQRRKRLSGIRDFDDLPALLHGVLTDPEHGEAACRRVRDRYRVVL 269

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   QW ++R+                TL  VGD KQ+IY+F GAE        
Sbjct: 270  VDEFQDTDPQQWGILRA----------AFHGHSTLVLVGDPKQAIYAFRGAEV------- 312

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                      G   S  EL  ++RS AD++  +  +      A G  +     +      
Sbjct: 313  ---LSYLDAVGSAHSHQELTTNWRSDADLVAALGHL--HGGAALGHRDIVVHPVSAAKQV 367

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G   L  + +S+  +          +        +  S +A  +A  I  ++G+  
Sbjct: 368  SRLHGAAPLRLRYLSRAGAGR-------LNNSGYPAVGALRSRVAADVAADIVELLGSGA 420

Query: 362  IFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                NG  R ++  D+ +L            L R   +   +  V      + +  A   
Sbjct: 421  TLELNGVTRPVEPGDVAILAGTNAQIA----LVREALDRVGVPSVLAGGTSVFETPAATH 476

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
             + + + +              +PL  ++  D+                           
Sbjct: 477  WLQVLQALEQPHRPDRVRLAALTPLIGWTAADVDA--------------------RSDEV 516

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV----IDVLDEFLNFT 536
               V   + EL  +         F  +        + ++    E     +  + + L   
Sbjct: 517  VARVGGQLRELATVFAQSGFAALFERLAAESGLEARLLTVAAGERTLTDLRHIGQLLGAV 576

Query: 537  LRNEQNSYSSLQELIS----ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
              +E    ++L   ++    + +       R   ++   V+I TVH +KGLE P+V++  
Sbjct: 577  AVDESLGLTALTGWLTDRIKDPKSGGGDRSRRLDSDAAAVQIATVHASKGLEYPIVYVP- 635

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                 F     +       L  D      +      +    D  +        E  RLLY
Sbjct: 636  -----FGWSTGRYADPNRLLLHDEHGRRILDIGGEGSPGYGDRRRQRDAEAAGEDLRLLY 690

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWY------------------DMVYDSFHNDER 694
            V +TRA  QL++      S  +    R  +                   MV +       
Sbjct: 691  VALTRAQCQLVLWWAPAYSTNEAPLHRMLFGREPGEADVPQKVGVPEDPMVAEQLTRWAE 750

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               + +         I     T   E T         +++D         +   +    P
Sbjct: 751  AAPVTVEVQAVGAGPIPQPSWTPPQEETGELAAAVFARVLDAGWRRTSYTALTASAHEHP 810

Query: 755  YILNPSTIDTKGKTNLESLL--------------SDNQTFNRGLIIHKLLQVIFTLPEHK 800
             + + +          E  L                      G ++H++L+ + T     
Sbjct: 811  GVTSEAEEPEIEDEPEEPALIAAAPALGIPSTMNDMPYGAVFGTLVHEILEHVDTAAADL 870

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCDSYSEVSVSGKI 855
                +       A      +   L  ++  +L  P+     +      D   E+     +
Sbjct: 871  EAELVRHCREAVAARMSQVDPVALADALLPVLRTPLAGGGTLADITPRDRLPELDFELPL 930

Query: 856  NCPKKDII----------------------------------------ISGRIDQISISQ 875
                   +                                        ++G ID +   +
Sbjct: 931  AGGDDPAVLTVTLHRIVDLLRNHLPADDVLAPYADRLATLEPTPLRGYLTGSIDAVLRLE 990

Query: 876  Q-NIFIFEYKTHHHVPQEI------------EHIPYTHIAQLSIYEKILKD 913
                 I +YKT+   P E+            E +   +  Q  +Y   L  
Sbjct: 991  GPRFVIVDYKTNRIAPGEVTTADFTRESMAGEMMRSHYPLQALLYAVALHR 1041


>gi|319788629|ref|YP_004148104.1| exodeoxyribonuclease V subunit beta [Pseudoxanthomonas suwonensis
            11-1]
 gi|317467141|gb|ADV28873.1| exodeoxyribonuclease V, beta subunit [Pseudoxanthomonas suwonensis
            11-1]
          Length = 1205

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 136/960 (14%), Positives = 283/960 (29%), Gaps = 106/960 (11%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ---TLQQASQTQCIEERFSLL 69
             EL+   L      + + ++      +  G+      A     L++  Q       F+  
Sbjct: 225  RELLQAGLAHADDLREALLSAVAGKVLHGGSYKAAWIADLFAQLRRWCQAGEPHVPFAHP 284

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                L +    +    +++   K+PD    L  + + + +  ++ + Y+  +       +
Sbjct: 285  KLGQLYRATLLKCT--SKDGAGKTPD--SPLCAAVEAYAQAVEQVSAYREARCVAMLHQV 340

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                       K++  V  ++DLI +  + L+    +  +  ++ ++    L+DE QDT 
Sbjct: 341  RADARRRLATLKRQLRVQTYDDLIDDVANALEGP-HADELAGRLREQYAIALVDEFQDTD 399

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            L QW +   +           S    LF +GD KQ+IY F G + +  L  +        
Sbjct: 400  LRQWRIFERVF-------GAASGDPALFLIGDPKQAIYRFRGGDVETYLAAR-------- 444

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
              G   +   L  +FRS   +L+ ++ +++       +             +    G  +
Sbjct: 445  --GTAKAAPPLDRNFRSRPAVLSAIEAMYTRAGATAFVDGRIVFHPVQPGGKRADAGFQR 502

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKK 368
                  +    Q               P   S  +        I + ++      ++   
Sbjct: 503  DGTTAPALTLWQAPAPPVDSNGKRKPWPAGKSRDLATAACVAAIHSVLVDARAGRASIDG 562

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R ++  DI VLVRK  +        R       I  V      L       +L+AL + +
Sbjct: 563  RPVRPGDIAVLVRKHHEATR----IRQALAKVGIPAVAAGNLSLFCTDEAHELLALLQAL 618

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--IK 486
            L  +DD      L + L       I  +           +  +  A     +      + 
Sbjct: 619  LHGDDDSRLRAALATVLVGQDAQHIAALDA----DGPAMQAWRATALGWRERLDQGKPLV 674

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE---QNS 543
             I EL               +L    G ++  +         L E L    R+       
Sbjct: 675  LIGELCARQAT--------RLLALVDGERRLTNYLQ------LAEQLQVAWRHALGPHGL 720

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               L+  I++      T      ++ + V+I+T+H +KGLE P+VFL   G         
Sbjct: 721  VDWLERAIAQASSDDETQLLRLESDAHRVQIVTLHKSKGLEYPLVFLPYVGIGGKVRDPG 780

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            + +            P+   + ++  +  +  +   K     E  RLLYVG+TRA D L 
Sbjct: 781  RCITARDPH---DRAPVLHWKLQADTSGWNQAVDEWKTGEAAEDARLLYVGLTRARDALW 837

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            +      ++ K +      D    +      +        ++     A       P    
Sbjct: 838  LATGEFYNHGKTALWPMVSDPQELAKALPGAIVLDAGEPPVDLPWLPAEAEGQVPPAREL 897

Query: 724  LEREE---TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
                     +              +        P   +            E+        
Sbjct: 898  SRPLASDWWVYSFTQLANADGAGDTSSAATQPAPGGRDEPASPEAEAPVDEAYDPRFSGS 957

Query: 781  NRGLIIHKLLQVIFTLPEHKRK-----------NFITSYCTKNAKLWPAKEYKNLLLSIT 829
              G+++H++L+          +               +           ++   +L  + 
Sbjct: 958  RFGVVLHEVLEFADFAAWQDWQPGDPAPAGEEQRIGKALRNAGYAETDLEDGIAVLTRLA 1017

Query: 830  R------LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII------------------- 864
                   L E   +         +E+     +   + D ++                   
Sbjct: 1018 GHTLTVPLPEGARLAALPEDQRRAEIEFQFALAPTRTDALLSLLHRHGLLHGRSGFGGRR 1077

Query: 865  ------SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
                  +G ID   +     ++ +YK++       + +        +  Q  IY   L  
Sbjct: 1078 RLEGLMTGLIDLTYLHDGRWYVLDYKSNRLPGYGPQQMAEAMEHSEYQLQALIYTVALHR 1137


>gi|254881838|ref|ZP_05254548.1| ATP-dependent helicase [Bacteroides sp. 4_3_47FAA]
 gi|319641141|ref|ZP_07995844.1| ATP-dependent helicase [Bacteroides sp. 3_1_40A]
 gi|254834631|gb|EET14940.1| ATP-dependent helicase [Bacteroides sp. 4_3_47FAA]
 gi|317387272|gb|EFV68148.1| ATP-dependent helicase [Bacteroides sp. 3_1_40A]
          Length = 1058

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 126/814 (15%), Positives = 257/814 (31%), Gaps = 101/814 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    E   +N       L+ +TN LL        S+++  KI   I +++ID
Sbjct: 340  IRLLANIDEEVRELNHENNRF----LLSDTNALLHNLVKEGDSSFVFEKIGTTIRNVMID 395

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  R L  +                VGD KQSIY +   +   +   K  
Sbjct: 396  EFQDTSRMQWDNFRLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLKTN 449

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +           +  L  + RS A+I+   ++VF+                  +  +  
Sbjct: 450  IEAF------PVKVKTLTTNRRSAANIIHFNNEVFTAACEVLNNIYKEEQKKECKELKEA 503

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   +      +       +        +   +  ++      
Sbjct: 504  YN--------DVCQETYKDPGKGYVKVEFLSDTEDMTYMENTLHHLGEEVELLVAQG--- 552

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +Q KDI +LVRK +  PLI         +    +V ++ F L   LA+  +M 
Sbjct: 553  -------VQLKDIAILVRKNRSIPLIADYFD---KNTSYKIVSDEAFRLDASLAVCMIMD 602

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
              R++   E+ ++   +  +            +         +   I  +          
Sbjct: 603  GLRYLSQPENRIAKAQLAAAY-------QNEVLHKGIDLNTLLLNGIDDYLPF------D 649

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             IK   +L         ++    +         F      +    L  F +      Q++
Sbjct: 650  FIKEAEQLR----LMPLYELMEKLFNL------FQMSCIEQQDAYLCAFFDAVTEYLQSN 699

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH--K 601
             S L   I+  E+     K   S     +RI+++H +KGLE   V L     ++ +    
Sbjct: 700  SSELSAFITYWEEK-LGSKTIPSGEVEGIRILSIHKSKGLEYHTVLLPFCDWKMENETYN 758

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            H+       +   D  I      +  + +I  +   + +     +   LLYV  TRA   
Sbjct: 759  HLVWCAPRQAPFSDLDIVPINYSTAMQQSIYREEFLNERLQLWVDNLNLLYVAFTRAKKN 818

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            LII   +           +   +   +  +    ++I    ++        +  + +   
Sbjct: 819  LIIYGKAEQKGTVSELLGS--ALSDMTGKSYATGEEIYELGTLYLSSHEEEKQVSGNKLL 876

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
            T  +R                        +        S    +     E   ++++   
Sbjct: 877  TVAQRLPI-----------------HLETLETNIEFKQSNRSAEFIRGEEE--TEDKYIR 917

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            +G ++H L  VI           I         +  A++ + +       L++P++    
Sbjct: 918  QGQLLHNLFSVI--RTTDDVPPAIER-LRFEGIIESAQQEEQIRKLTEWALKHPLVKEWY 974

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
            S     E+     I   +K ++ + R D++ +    + + ++K               + 
Sbjct: 975  S--GRWELYNECAIIYREKGVLQTRRPDRVMMKDGEVIVVDFKFGKK--------RKAYN 1024

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             Q+  Y  +L D      +   L YV   ++  I
Sbjct: 1025 KQVKEYMDLLSDMGYEH-IRGYLWYVFNNELEEI 1057


>gi|237709837|ref|ZP_04540318.1| ATP-dependent helicase [Bacteroides sp. 9_1_42FAA]
 gi|229455930|gb|EEO61651.1| ATP-dependent helicase [Bacteroides sp. 9_1_42FAA]
          Length = 1058

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 124/817 (15%), Positives = 263/817 (32%), Gaps = 107/817 (13%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    E   +N       L+ +TN LL        S+++  KI   I +++ID
Sbjct: 340  IRLLANIDEEVRELNHENNRF----LLSDTNALLHNLVKEGDSSFVFEKIGTTIRNVMID 395

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  R L  +                VGD KQSIY +   +   +   K  
Sbjct: 396  EFQDTSRMQWDNFRLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLKTN 449

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +           +  L  + RS A+I+   ++VF+                  +  +  
Sbjct: 450  IEAF------PVKVKTLTTNRRSAANIIHFNNEVFTAACEVLNNIYKEEQKKECKELKEA 503

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   +      +       +        +   +  ++      
Sbjct: 504  YN--------DVCQETYKDPGKGYVKVEFLSDTEDMTYMENTLYHLGEEVELLVAQG--- 552

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +Q KDI +LVRK +  PLI         +    +V ++ F L   LA+  +M 
Sbjct: 553  -------VQLKDIAILVRKNRSIPLIADYF---DKNTSYKIVSDEAFRLDASLAVCMIMD 602

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSED--DIFKICTQRHETETVYEYIQKFANCGISKF 481
              R++    + ++   +  +          D+  +     +    +++I++     +   
Sbjct: 603  SLRYLSQPGNRIAKAQLAAAYQNEVLHKGIDLNTLLLNEIDDYLPFDFIKEAEQLRLMPL 662

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              +++ +  L  ++                            +    L  F +      Q
Sbjct: 663  YELMEKLFNLFQMSC-------------------------IKQQDAYLCAFFDAVTEYLQ 697

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH- 600
            ++ S L   I+  E+     K   S     +RI+++H +KGLE   V L     ++ +  
Sbjct: 698  SNSSELSAFITYWEEK-LGSKTIPSGEVEGIRILSIHKSKGLEYHTVLLPFCDWKMENET 756

Query: 601  -KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
              H+       +   D  I      +  + +I  +   + +     +   LLYV  TRA 
Sbjct: 757  YNHLVWCAPRQAPFSDLDIVPINYSTAMQQSIYREEFLNERLQLWVDNLNLLYVAFTRAK 816

Query: 660  DQLIICKHSNTSNE-KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
              LII   +       +       DM   S+   E + ++      + +E          
Sbjct: 817  KNLIIYGKAEQKGTVSELLGNALSDMTGKSYATGEEIYELGTLYLSSHEE---------- 866

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                        ++ +   K+         +       +     +   +       ++++
Sbjct: 867  ------------EKQVSGNKLLTVARRLPIHLETLETNIEFKQSNRSAEFIRGEEETEDK 914

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               +G ++H L  VI           I         +  A++ + +       L +P++ 
Sbjct: 915  YIRQGQLLHNLFSVI--RTTDDVPPAIER-LRFEGIIESAQQEEQIRKLTEWALRHPLVK 971

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
               S     E+     I   +K ++ + R D++ +    + + ++K              
Sbjct: 972  EWYS--GRWELYNECAIIYREKGVLQTRRPDRVMMKDGEVIVVDFKFGKK--------RK 1021

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             +  Q+  Y  +L D      +   L YV   ++  I
Sbjct: 1022 AYNKQVKEYMDLLSDMGYEH-IRGYLWYVFNNELEEI 1057


>gi|52425154|ref|YP_088291.1| RecB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307206|gb|AAU37706.1| RecB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1205

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 138/995 (13%), Positives = 292/995 (29%), Gaps = 171/995 (17%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILK-----KAQTLQQASQTQCIEERFSLLSS 71
             K  W     ++  + +           +        + + ++Q +Q +        LS 
Sbjct: 232  LKTAWIESENEIQRLIEKAKTQKLIKGASYKANHLPGRYEKIRQWAQDETDFSIPEPLSK 291

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
            +F            +Q          E +  +  +                 +      +
Sbjct: 292  YF------------SQSAVDSYLTKNEPVNHAVFKQADSAVERAQSTELYVKVILYHYIQ 339

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            ++    +  K  +    F+DL+    + +   +    +   I  +    +IDE QDT   
Sbjct: 340  WMRDKLDRYKASHQEKSFDDLLRLLKEAVVSPEHGNELVKLIRYQYPFAMIDEFQDTDAQ 399

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+++   +  +    +           +GD KQ+IY F GA+    L+  +  +   T  
Sbjct: 400  QYQIFSKIYIESAQAETG------FIMIGDPKQAIYQFRGADIFTYLKAAQQAKYHFT-- 451

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                    L  ++RS  +++  V+++F    +AQ    ++         +    G   L 
Sbjct: 452  --------LGKNYRSEGNLIHAVNQLF-NFSSAQPFLYENIEFSSVEPGKAQ--GRFIL- 499

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS-NMIGTDTIFSNGKKRV 370
                    ++            +    E  A   A  I+  +   +     I +  K   
Sbjct: 500  --------NEQQEAPLGVYL-GEEPSDEQLAETCANCISQWLQLALRERAGIQTAEKFLP 550

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++ KDI VLVR  K+  LI    +        SV  +D+  + D    K+L+ + +  L+
Sbjct: 551  LEPKDIAVLVRNAKEAELIKNALQA---RQISSVYLSDKSNVFDCNEAKELLLILQACLN 607

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
               + + V  + + +F  +  DI  I     + E   +    +        Q V+  +H+
Sbjct: 608  PFSERNIVNAIATAIFCLTGADIQHIKQHETDWEKWIDRFVGYQRSWRQ--QGVLAMLHQ 665

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
            L               ++    G ++    F       L E L       ++  + L+  
Sbjct: 666  LF------LAEQIPQKLINMPNGERRVTDLF------HLAELLQEATTLNESDAALLRWF 713

Query: 551  ISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              ++  E           +    V+I+T+H +KGLE  +V+L    ++   +      HI
Sbjct: 714  ERQIRGENTQDENIIRLESEQQLVKIVTIHKSKGLEYNLVWLPFISAKAKVNPQ----HI 769

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                N       W   +   + ++             E  RLLYV +TRA   L +    
Sbjct: 770  STYYNAQAQAVQWDMDACHNDEVIK--------ERLAEEMRLLYVALTRAKYHLAMALPD 821

Query: 669  NTSN------------------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            N +                         + K     +   +  +  +  +  +I+     
Sbjct: 822  NFTKNWNALLYALTRGEIGTQAKLTDEYQTKPLLDDFAQRISPANIHYYQTDEIQGGGYQ 881

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI--PKKLFSPIKNDINEPYILNPSTI 762
             KD    Y     H +        +   L    +    K         +     +N S I
Sbjct: 882  QKDNHAQYVAQEFHGKIERDWTISSFTSLTQMHEWNSQKGRHEAFSPIVTTESAVNFSLI 941

Query: 763  DTKGK------------------------TNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
              + K                            S        N G  +H+  +      +
Sbjct: 942  LDEAKDIDLTFLPKINEDKNNFSDIVTGYRQGYSPFDFPHGINVGTALHRFFEK-NEFNQ 1000

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSV 851
                 ++ + C         +  + L+  I  +L  P+       +      D   E+  
Sbjct: 1001 PIIDEYVKNLC--QTIQLSEEWKQPLIQWIEAILTTPLFNGEPLNLAQLDKKDCIKEMQF 1058

Query: 852  SGKINCPKK------------------------DIIISGRIDQISISQQNIFIFEYKTHH 887
              K+    K                          ++ G ID +   +   ++ +YK++ 
Sbjct: 1059 YLKLEGRFKLHSFNRLLQKYHTIKREPYLFDEIQGMLRGFIDLVFRHESKYYVLDYKSNF 1118

Query: 888  HVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
                               + +  Q  +Y   +  
Sbjct: 1119 LGKDMAFYARSQLTDVMKNHHYDLQYLLYTLAIHR 1153


>gi|317013248|gb|ADU83856.1| DNA helicase II (uvrD) [Helicobacter pylori Lithuania75]
          Length = 682

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/539 (15%), Positives = 164/539 (30%), Gaps = 115/539 (21%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             I  +  +  ++I++DE QDT+ +Q E ++ L+           +   L  VGD+ QSI
Sbjct: 189 ETIAKETSERYHYIMVDEYQDTNALQLEFLKKLS----------FTHHNLCVVGDDDQSI 238

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F GA+   +L   +          +   +++L  ++RS+A+IL   + + S  ++   
Sbjct: 239 YGFRGADISNILNFSKHF--------KGAKVVKLETNYRSSAEILACANSLISHNQHRHI 290

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +         +S +      V        +                             
Sbjct: 291 KT--------LQSFKGSHKSVVCKEYLTQKEESLD------------------------- 317

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +AY I  ++       N          I +L R    +  I      L     I    
Sbjct: 318 --VAYQIKALLKKGENLEN----------IAILYRLNGLSRSIEESLNAL----NIPYRL 361

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-------Q 459
                  +   +KD +A    +  ++D      +L  P     +     I +        
Sbjct: 362 IGALSFYERAEVKDALAFMHLVAKKDDRFFIKRVLNKPPRGLGKITQEWIFSLLDEEGLN 421

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
             E   +  +  K         +     I  L   A   S   F    L      + +  
Sbjct: 422 LEEALKLGAFKDKLNPKNEYALKKFTAMIGRLRE-AFEISVEKFCERFLEETNLLKSYEK 480

Query: 520 R-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                E    + E L+    + + + +    L+  L +    +    + N  +V  M+VH
Sbjct: 481 EDNYEEREGFVKELLSLVKEHFKTNPT--HSLLDFLNESVLDVHN--TENAQKVSCMSVH 536

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE   VF++      F H                                      
Sbjct: 537 MSKGLEFKHVFVIGLEEGFFPH-----------------------------------RGF 561

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
            ++S  EE  RL YV +TRA ++L +      S   +    +    + ++    +    
Sbjct: 562 NQESDLEEERRLAYVAITRAKEELQLSYVKERSYFGRKISCSPSVFLEEAKLLQQEKPP 620


>gi|146329291|ref|YP_001209094.1| DNA helicase II [Dichelobacter nodosus VCS1703A]
 gi|146232761|gb|ABQ13739.1| DNA helicase II [Dichelobacter nodosus VCS1703A]
          Length = 712

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 94/624 (15%), Positives = 191/624 (30%), Gaps = 118/624 (18%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           K  Q +    ++         ++   L +A  +    YE   ++   +DF +L++ T +L
Sbjct: 140 KAVQAQINAYKENGLRAADLPTSAPPLEIAVHHFYQEYEHITRQQGTMDFAELLLLTTEL 199

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L + +    ++ +  Q    ILIDE QDT+ +Q++++  L                LF V
Sbjct: 200 LAQHET---VQQRFHQRFQAILIDEFQDTNTLQFKLVTQLCA----------PETQLFVV 246

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIY + GA+   ++  +R               I L  ++RST  IL   + V +
Sbjct: 247 GDDDQSIYGWRGAQIDHIVHLERYYPT--------VHTIRLEQNYRSTKTILAAANAVIA 298

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             +   G +  S                               + +  +  +  +   + 
Sbjct: 299 HNQTRLGKTLWS----------------------------DGKHGEAIALYAAVNEYDE- 329

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 AR +   I+                       +L R    + +           
Sbjct: 330 ------ARYLVENIAQFHQHGGA----------YDQCAILYRSNALSRIYEEAL----IQ 369

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-T 458
             I           +   IKD +A  R +   +DD +   ++  P        +  +   
Sbjct: 370 KNIPYRIYGGLRFFERAEIKDALAYLRLLHYPDDDAALERIINQPPRGIGAKTMEDVRLL 429

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH--------DFFTLILGA 510
            +    +++  I   A             + +   +    +          D   +++  
Sbjct: 430 AQRVQCSLWRVITDDALLEQKCSARAQNALRQFRALIIKMTAFAERSDSLRDILKMVVDE 489

Query: 511 KKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                   +    E     + L E +      + +   +  + I++              
Sbjct: 490 SGLYAALTNNNQEETENRRENLHELI-AAGDYQSDQNDADHDKIADFLAMASLDAGDKET 548

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           N + V++MT+H+AKGLE   V++V     +F +                           
Sbjct: 549 NAHGVQLMTLHSAKGLEFNRVYMVALEEGLFPN--------------------------- 581

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                         +  EE  RL YVG+TRA +QL +          + N       + +
Sbjct: 582 -------ARSLENSAQLEEERRLAYVGITRAREQLTMSFAERRRYYGQDNYARPSRFLNE 634

Query: 688 SFHNDERVKKIKLTNSINKDEWIA 711
                  + +  L N    ++   
Sbjct: 635 IPPELLNMVRPVLFNRTQPNDIQE 658


>gi|251773028|gb|EES53584.1| putative ATP-dependent DNA helicase, UvrD/REP family
           [Leptospirillum ferrodiazotrophum]
          Length = 796

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 116/812 (14%), Positives = 228/812 (28%), Gaps = 156/812 (19%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI------LKKAQTLQQAS 57
           R  ++  E   L+           V +   ++      G  +        K A+ L +  
Sbjct: 26  RLAVTHEEGPLLVLAPAGSGKTRVVIERLLFLIERSGRGGESFFVATFTRKAARELVERI 85

Query: 58  QTQCIEERFSLL-----SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
             +  + R   +      S  L ++   +  +        + D K  +++         +
Sbjct: 86  SHRLPDARLPYVGTFHSLSARLLRRLADRAGLPPDFTVSDAGDQKALVREIMRRHKVSEE 145

Query: 113 RFNTYKM------------------FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
                ++                   +    S          YEE  +KN  LD++DL+ 
Sbjct: 146 DVAPQEILRQISQWKNARQTPGPELARRLFGSRRFMATCYEEYEEGLRKNRSLDYDDLLC 205

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL  +     +   + QE +HIL+DE QDT+ +Q E+IR L+ +           R
Sbjct: 206 RLVGLLSSQPD---VATALRQEFHHILVDEYQDTNPLQEELIRLLSRE----------RR 252

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD+ QSIY F GAE   + R                  + L  ++RST+ I+   
Sbjct: 253 NVTVVGDDDQSIYRFRGAEVAHIQRFSDHYP--------GAGRVLLSRNYRSTSAIVDSA 304

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             V    +     +  +           G    V L                        
Sbjct: 305 TSVIRKNDGRYMKTVTAVR---------GGGSPVLL------------------------ 331

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
              +       AR +A  +   I              +     VL R    +  +     
Sbjct: 332 --MEFPDEEAEARGVAGILREWIAGGG----------RPSRAAVLFRTNAQSLPLEKAMA 379

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  +         L +    +DL+A  R +++  D LS   +   P     ++ + 
Sbjct: 380 A----AGVPFFRPGGGGLLESREARDLVAYLRLLVNPFDRLSLARIFNVPPRGQGDEAVE 435

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-----AQFCSPHDFFTLILG 509
           ++         +               +  +  +  L+       ++   P      ++ 
Sbjct: 436 ELSALSEAHPELPVAELLERLAERGGRREPLGKLSALLREGSEAASRGDVPLSLLDRVVA 495

Query: 510 AKKGRQQFISRFGNE----VIDVLDEFLNFTLRNEQNSYSSLQE-LISELEQYPPTIKRA 564
           A   R+        E     ++ L+EF        +         L + LE    + +  
Sbjct: 496 ATGYREWLTREKDEETRRRRLETLEEFRGLAGDFVREEDREASGPLAAFLEDLTLSREGP 555

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            +     V +MT+H +KGLE   V +     Q+                           
Sbjct: 556 DAEGRERVGLMTIHQSKGLEFDCVVVAGLEDQLLP------------------------- 590

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                            +  EE  RL YV MTRA ++L +          K+        
Sbjct: 591 -------FRSFAGGRSSTDIEEERRLFYVAMTRARERLHLTWARTRRIYGKTQSFGPSPF 643

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN---TPLEREETIKQLMDEQKIPK 741
           +              +   ++  +   +  +   P +    P +  +           P 
Sbjct: 644 LR------------DIPGELSAGDRPVFVRAPSAPSSSGRLPGQSRDGGSGFSPSFGHPS 691

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
           +        +  P     S ++ +      + 
Sbjct: 692 RRDRLASPSVGRPVFRGASKVERRQGEPSPAE 723


>gi|317064150|ref|ZP_07928635.1| LOW QUALITY PROTEIN: UvrD/REP helicase [Fusobacterium ulcerans ATCC
           49185]
 gi|313689826|gb|EFS26661.1| LOW QUALITY PROTEIN: UvrD/REP helicase [Fusobacterium ulcerans ATCC
           49185]
          Length = 825

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 130/862 (15%), Positives = 267/862 (30%), Gaps = 140/862 (16%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
             K++K  +   +  +  +   + +     +T  K  +  Y++   ++ V+DF  +    
Sbjct: 35  AGKIQKWVNRINE--EGRSLDYVKEEQDKKITFLKNAHELYQKLLIEDNVIDFASIQREI 92

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             +L   ++   +  +I ++I +I+IDE QDT+ IQ ++I  L            + + +
Sbjct: 93  YRMLLNNEI---VAEEIREKIQYIMIDEYQDTNSIQEKIIFEL----------GGTRKNI 139

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ Q IY F GA  K +L      +        +  II L +++RS  DI+T  ++
Sbjct: 140 CVVGDDDQGIYRFRGASVKNILEFPEKFE------ENQCKIITLDINYRSHRDIITFCNR 193

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
             S+                              W+    Q D Q  P++E   +     
Sbjct: 194 WISLIN----------------------------WKNFRYQKDIQPPPEKEFVDNPGVIR 225

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
               S +     I   I N+  T  I             +  L +  + + +        
Sbjct: 226 IGGGSETQWKENIYKFIKNLKTTGKIED--------YSQVAFLFKSVRFSRVKE--LIDY 275

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
             D  I               +K ++     +  Q   L    +       +  D I  +
Sbjct: 276 LEDRGIPAYSPRSKNFFYRNEVKLVLGALLVLFPQSKPLVLDDVYIRKTAAYYNDCINVL 335

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYI-HELIHIAQFCSPHDFFTLILGAKKGRQ 515
                + + +YE+I K         +   + I      + +F +  +   L     K  +
Sbjct: 336 KKHLSKDKELYEWILKKREENRDLGEEKSENISRIFYSLFEFKTFKELIDLNKNGAKEGR 395

Query: 516 QFIS----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSANHN 570
           +  +        +  + L      T  N +     L    I  L +              
Sbjct: 396 EIYNLGILSQIFDKFENLSRIEYITKENIEKVVRYLFVTHIRLLFEKGIDEYENKETLLG 455

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V  MT+H AKGLE PVV +    S+  + +  ++  +   +                  
Sbjct: 456 AVSFMTIHQAKGLEFPVVIVGSLESEPDNREPTEEDRLEDIITLGNDF------------ 503

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                 +   +    ++ R+ Y   +RA + L++    N +  K+   + +  +     +
Sbjct: 504 ------EPKDRKNIFDFWRVFYTAFSRAQNLLVLTSIENRAGGKELPSKIFKPVYETIPY 557

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
            ++     +                +   E    E       ++  +  P +     + +
Sbjct: 558 WNDESFHFER------------LQISKLKEADTKEFLSYTGHILIYEDCPLRYRFYKEFE 605

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK-----NFI 805
                    S                      G+++HK ++ I    +   +       +
Sbjct: 606 FKPLKTNKTS---------------------FGILVHKSIENIHKEVKADTEKKYSDEEL 644

Query: 806 TSYCTKNA--------KLWPAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEVSVSGKIN 856
                KN                 +     I R +++     A +      E SV     
Sbjct: 645 KELIEKNYNMLKKNIRVFLGENIRERAFEQIKRYVDSAENNWANIISSEEKEYSVE---- 700

Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
                 I+ G ID +      I + ++KT      E       +  Q+ IY  +L++ Y 
Sbjct: 701 ---NSYILEGTIDLLRKQGDKIELIDFKTGRFSGYEDARYIS-YERQIEIYSHMLREKYD 756

Query: 917 NKSLVCLLIYV--SEPKVFIIP 936
            ++L   L Y       +  IP
Sbjct: 757 LENLKAYLYYTGNRNEPMVEIP 778


>gi|145238554|ref|XP_001391924.1| ATP-dependent DNA helicase [Aspergillus niger CBS 513.88]
 gi|134076415|emb|CAK39643.1| unnamed protein product [Aspergillus niger]
          Length = 1003

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 99/695 (14%), Positives = 200/695 (28%), Gaps = 162/695 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE     + +LD++DL++   +LL+K         +    +  +L+DE QDT+ I
Sbjct: 173 QVYREYEANLAASNLLDYDDLLVRCVELLRKHP-------QCVSNVQAVLVDEFQDTNHI 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E++              S  + +  VGD  QSIY F  AE K + R +++        
Sbjct: 226 QYELMNLFA----------SQNQRITVVGDPDQSIYGFRSAEIKNLGRMQQLY------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +  SI+ L  ++RS+  IL+    V     +        T ++                
Sbjct: 269 -KDTSIVLLEDNYRSSGCILSSAQDVIEQDSSRPAKKLQPTHSLGTMPVLRKLP------ 321

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                        ++   A  I   I   I           +++
Sbjct: 322 -----------------------------NSESEALWIVLEIKRCIA-------LTGKLV 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L+R    +  I          + I           D + IK L+   R I   
Sbjct: 346 NYSDFAILLRSAALSRQIEAQM----GKHGIPYRMVGGLRFFDRVEIKLLLDYLRVISQP 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFAN-----------CGIS 479
            +  + + ++  P     ++ +  +     +  + ++++I+  A               +
Sbjct: 402 GNTDALLRIINVPSRKLGDESVNLLTKGAEKAKKPLWDFIKDVAQGRSSTEKSLSKPADN 461

Query: 480 KFQHVIKYIHELIHIAQF----CSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEF 532
               ++  I              SP      ++     R+   +  G         ++E 
Sbjct: 462 GLCTLVGLIESARQKLCECTDGSSPRKLLDFLIKKLSFREYLKALHGSNEENRWANVEEL 521

Query: 533 LNFTLR--------------------NEQNSYSSLQELISELEQYPP------TIKRAHS 566
           L                          +Q ++   + L   L                  
Sbjct: 522 LTQADDTPGPENEAENDENLPEIQGLEQQQAHPGEEALSRFLANVALSTEVLPQEGEEGE 581

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +  +V I T+H AKGLE PVVF+    + +  H                          
Sbjct: 582 QSDEKVTISTIHAAKGLEWPVVFVPAVLNGIIPHS------------------------- 616

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                        +    +E  RLLYV MTRA   L +      S + +    + +    
Sbjct: 617 -------------RAEDSDEERRLLYVAMTRAQALLYLSYPLRQSRDGEEATLSSF---- 659

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                 + V++         ++ I  E +       P     +  +   +     +    
Sbjct: 660 ---LPSKLVEERFRFLGPKINDKIIQEIADILRRPMPGSAAISEGRSTCDIPYDDQWTED 716

Query: 747 IKNDINEPYILNPSTI-DTKGKTNLESLLSDNQTF 780
                +     + +     +     + L  +    
Sbjct: 717 GFEAPDAIIRWDGTRAMGGEPNPKRQRLNQEQSGA 751


>gi|66770581|ref|YP_245343.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris str. 8004]
 gi|66575913|gb|AAY51323.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris str. 8004]
          Length = 1372

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 125/890 (14%), Positives = 246/890 (27%), Gaps = 110/890 (12%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
            L  +   + +       ++  +       L         + K++  V  ++DL+      
Sbjct: 380  LFDALAVWQQADAVVRQWEGQRRIRLLHALRDDAVLQLAQRKRQRRVQTYDDLVDGVARA 439

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH--------- 210
            L+     A ++ ++  +    L+DE QDT   QW++   +                    
Sbjct: 440  LQGPQAEALVQ-RLRAQYAIALVDEFQDTDDRQWQIFSRVFGPEHAASGEAFAPDDDADF 498

Query: 211  ------SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                    PR L  +GD KQ+IY F G + +  L      Q+             L  +F
Sbjct: 499  DNAAGTPPPRLLALIGDPKQAIYGFRGGDVQTYLAAATTAQRAPP----------LEHNF 548

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-SQCN 323
            RS   +L  +D +++    A+    +       +         +Q  +         +  
Sbjct: 549  RSRPGVLAAIDALYAQAGYAEAFLTEGIAFHPVQPGTKRSDADLQRDDAAAPALTLWRAP 608

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVLVRK 382
                             +  +        I   +      S     R +QA DI VLVR 
Sbjct: 609  APPPPAKGKPKPWSAGRARELCTAACVAAIRGWLAGGRDGSASINGRPVQAGDIAVLVRS 668

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +   I      +     I  V   +  L       +L+AL + +L   DD      L 
Sbjct: 669  HGEATRIQQALGAV----GIPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALA 724

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            + L       I  +                       + +   +   +     Q   P  
Sbjct: 725  TVLIGEDAAAIAALEHD------------------GERHRRWQQQALDWRERWQRGGPLA 766

Query: 503  FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY------SSLQELISELEQ 556
                 LGA  G++      G   +    +        +  +         L   I+  + 
Sbjct: 767  LVGD-LGATHGQRLLALVDGERRLTNYLQLAELLQEADTRALGPHGLVDWLARRIANADD 825

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               T +    ++   V+I+T+H +KGLE P+VFL   G         +   +    +   
Sbjct: 826  NDETQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIGRADKSPGRHCVVHAPPHGRQ 885

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                    S       S      K   + E  RLLYVG+TRA   L I   +   +E+ +
Sbjct: 886  LHWNTSKWSADDTASWSTAETAWKHEQRAEDARLLYVGLTRAEHALWIATGAFHQHERTA 945

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK----- 731
                  D           V  +  T        +  + +   P     +R          
Sbjct: 946  LAPMLRDPAALQASAGAGVIALDDTAPPATLPRLPADDAVQVPAARLAQRHVVPDWWVYS 1005

Query: 732  -QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
               +          +      +      P++        +E+          G+ +H + 
Sbjct: 1006 FTQLANADAGSDPMASATLASSGGSDEPPASEPVSAPAEVEAFDPRFAGNRFGVAMHDVF 1065

Query: 791  QVIFTLP--------EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------ 836
            +                                +   E  + L  +TRL+ + +      
Sbjct: 1066 ERCDFAAWRNWCPGQPAPEGQAAAILEALQRGGYAQDELDDGLAMLTRLVGHTLTVTLPE 1125

Query: 837  ---MTTAMSCDSYSEVSVSGKINCPKKDIII-------------------------SGRI 868
               +         +E+     +   + D ++                         +G I
Sbjct: 1126 GTCLAAVPEPQRRNEMEFHFAMRPTRVDALLALLHRFGVVTERQAFGARQRLEGLMTGLI 1185

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
            D    +    ++ +YK++     + + +        +  Q  IY   L  
Sbjct: 1186 DLTYCADGRWYVLDYKSNRLPAYDPDALARAMAHSEYELQALIYTIALHR 1235


>gi|294341371|emb|CAZ89788.1| putative exodeoxyribonuclease V, beta subunit recB [Thiomonas sp.
            3As]
          Length = 1202

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 151/1045 (14%), Positives = 310/1045 (29%), Gaps = 176/1045 (16%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMET-------GNPTILKKAQTL 53
            L  R G    ++     K  W      +      +  S          G  ++      L
Sbjct: 228  LWQRLG-EPQQAQVRTLKAQWAERIASMRQWLCALVQSETNPLSKNKYGLKSVCGWFDAL 286

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            Q        +++  L    +        +    Q    + P +  +++  +     + D 
Sbjct: 287  QAWLD-DPAQQQPDLDDKTWAKLTPDGLRAGCNQGKQVEPPAVFNQVETLRAALADLADL 345

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                + +         A  ++A     K  +    F D +   +  L        +R +I
Sbjct: 346  VPELQTY--------AAAQVDARLRALKAASGQFSFHDQLERLDAALAGPQ-GERLRSRI 396

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             ++    LIDE QDTS +Q+ V   L           ++   +  +GD KQSIY+F GA+
Sbjct: 397  LEQYPVALIDEFQDTSALQFSVFNRLYGITTA----QTTHSAVLLIGDPKQSIYAFRGAD 452

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-ST 292
                LR ++  Q R +          L  ++RSTA+++  V+++F   E + G       
Sbjct: 453  IASYLRARQATQGRHSA---------LQTNYRSTAEVVHSVNQLFERREQSAGAGAFLYR 503

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                  +        V    +      S+      + + + +   +  +    A   A  
Sbjct: 504  DDEAPDADNPVPFIAVGARGRAEQLVCSEGPVPALTCSVHQELESKRDARERFAAHAAAR 563

Query: 353  ISNMIG---TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I +++         ++G    ++  DI VLVR   +   +    R L+     SV  +DR
Sbjct: 564  IVSLLNDTQAGFRQADGGFARLRQSDIAVLVRDGDEARAVR---RALQRRGVASVYLSDR 620

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +       DL+   R +    D         +P    + D++  + T     E     
Sbjct: 621  DSVFASPEAADLLRWLRAVAEPRDGRLARAAFAAPTLGATIDELAALATDDDVFENRLAL 680

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                    +++ Q +      L  + Q     D     L  + G ++  +         L
Sbjct: 681  --------LAELQTIWLRQGVLPMLRQTLHRLDLPARWLSEEDGERRLTNVL------HL 726

Query: 530  DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             E L           + ++ L  ++  Q          +  + VR++T+H +KGLE P+V
Sbjct: 727  AELLQTASGTLDGEQALIRWLQEQMAGQSTEEQVVRLESEADLVRVVTIHKSKGLEYPLV 786

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            FL                                                  +    E  
Sbjct: 787  FLPFA-----------------------------------TAFKEAKDGADDRERLREDL 811

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKK---SNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            RLLYV +TRA   L +   +    +      ++     ++      +       L  +  
Sbjct: 812  RLLYVALTRARHALWVGIAALKVGKGSVCMLHRSAIGYLLGGDTPCEGAAIPGLLRETFG 871

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL--------FSPIKNDINEPYIL 757
                +    +    E   L+       L++      +         FS +  D+      
Sbjct: 872  DSPAVQIVDAAQEAELQRLQAAHPAPALIEPPNYHAQFERNWSIGSFSALVRDLTPRSTQ 931

Query: 758  NPS-----------------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT----L 796
             P+                            +     +    G  +H+ L  +      L
Sbjct: 932  QPALQAALQDELWATEPSMEQPSPATLQPSAARHRFPRGALVGKFVHEQLAWLGENGFAL 991

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL---------ENPMMTTAMSCDSY- 846
               + ++ +   C +    W A    +LL  ++ +L           P + T ++   + 
Sbjct: 992  SAQQTQDSLLQRCARQG--WDAPRSADLLEWLSEVLVTPLPPLGVALPEIDTLLAEMEFW 1049

Query: 847  --SEVSVSGKINCPKKDII-----------------ISGRIDQISISQQNIFIFEYKTHH 887
               E + + +I+   +  I                 + G  D +       ++ +YK++ 
Sbjct: 1050 LPVERACAAEIDALCQRHILPGRARPELTERTLHGMVMGFADLVFHHAGRYWVLDYKSNV 1109

Query: 888  HVPQEIEHIPY---------THIAQLSIYEKILKDSY---------PNKSLVCLL-IYVS 928
                + ++             +  Q ++Y   L             P   L   + +++ 
Sbjct: 1110 LGTDDADYTQQALEAAVLEHRYDVQCALYMLALHRLLQARLRTAYDPQTQLGGAIDLFLR 1169

Query: 929  E------PKVFIIPQNKLNKAFAEI 947
                     V I P   L  A   +
Sbjct: 1170 GVRGPQSGCVHIPPDGVLLDALDAL 1194


>gi|154509554|ref|ZP_02045196.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC
            17982]
 gi|153799188|gb|EDN81608.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1142

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 137/998 (13%), Positives = 271/998 (27%), Gaps = 197/998 (19%)

Query: 94   PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
               +E L     E  ++R+  +  +                A Y++ K+   VLDF D +
Sbjct: 182  ESAREALVGFGRELEQVRETNDDARRLLRANRRRIAFLDPIAEYQKRKRDMGVLDFSDQL 241

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            +    ++++   +  +R  + +E   +L+DE QDTS+IQ +++  L  D           
Sbjct: 242  VLATRIVRE---APAVRESLREEFRAVLLDEFQDTSVIQMDMLSMLFGD----------- 287

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              + AVGD  Q+IY + GA    +       Q   T   Q+   + L  ++R+   IL  
Sbjct: 288  HAVTAVGDPNQAIYGWRGASASSLESFLDRFQ---TGEAQESQTLTLSTAWRNDEAILDA 344

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             ++V +         E            + + G                 P         
Sbjct: 345  ANRVAAPLREVAAYQEGKEHLKAQSPVLVARDGA---------------GPGHVDVAYAP 389

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
            D      +    AR +                      + + + VL R+RKD   +    
Sbjct: 390  DYEAALGAVVDFARSVRSH--------------ASEGGKRRTVAVLCRRRKDFAYVDAAL 435

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD- 452
            R    D  I         L D  A++D+ A        E       +L       ++   
Sbjct: 436  R----DAGIPTEIVGLGGLLDQPAVQDVRAALELAYDVEASPWLARLLVGIDLGATDLMA 491

Query: 453  --------------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
                                +        E     E     +   + + + + + + ++ 
Sbjct: 492  LGDWSRVLARTEGTNPHQAVLLDAVDSPPEPGWAAEGRPAISEEAVRRVRLLGERLRQVR 551

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELI 551
                          IL                    LDEF+  T   E+++  +SL   +
Sbjct: 552  EGVGRSVTEQVERAILIMGTLDDVIADPLSMGGRAALDEFIAVTAAYEKDTPGASLGSFL 611

Query: 552  SELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            + L                 +   V+IMTVH +KGLE   V +      +F     +K  
Sbjct: 612  AYLRMADEREDGLEAPLGEPDPRAVQIMTVHASKGLEWDCVVVFGLSDGIFPSHDKRKTV 671

Query: 608  IMPSL---------NDDPGIPIWIPQSKSRNNIVSDLIKHLKK----------------- 641
                          +                  + D+    K                  
Sbjct: 672  SWLDEPPIATAWLTDAGALPHPLRGDRADLPPFLLDVEGESKPSAAYSKWVKGHYGRSLG 731

Query: 642  -STQEEYNRLLYVGMTRAS--DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
               + E  RL YV MTRA     L+      T +  +   R   +     F +   +   
Sbjct: 732  VHAEREERRLAYVAMTRARSIQLLVGSWIYRTGSTTRQPSRYLMEARAQLFGDAPDLVDD 791

Query: 699  KLTNSINKDEWIAYEWSTHHPENT------PLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
             L    ++  W   +W +   E+        +  E   + ++D       +F P +   +
Sbjct: 792  TLVRVGDRGVWARGDWRSLGIESVSGAGVCLIAPEPGDEDIVDSGAGAASVFFPEEPGPS 851

Query: 753  EPYILNPSTIDTKGKTNLESLLSDNQT-FNRG---------------------------- 783
               +   +        +L       +     G                            
Sbjct: 852  RQRVAAAAQAVEAQIRDLAQDQDVYEALAQLGDDPLVRDTVALIEEYHLGLETPVVDLWA 911

Query: 784  -----LIIHKLLQVIFTLPEHKRK-------------NFITSYCTKNAKLWPAKEYKNLL 825
                   +  LLQ         R+                 ++  +   L  A     + 
Sbjct: 912  ERVPATSVSALLQDADEFARDMRRPMPARPSSFSALGTVFHAWVERELHLASADPASEIT 971

Query: 826  ------------------LSITRLLEN------PMMTTAMSCDSYSE------VSVSGKI 855
                               +   LL +        +         +E      V++    
Sbjct: 972  TGNEVSAGEDATLAGGDDAADEALLTDGERERLERLRANFRAFVANELSDYRAVAIEEAF 1031

Query: 856  NCPKKDIIISGRIDQISI----SQQNIFIFEYKTHHHVPQEIEHIPYTH-IAQLSIYEKI 910
            +     + + GRID +            + ++K+   V    +     + + QL +Y++ 
Sbjct: 1032 SVQVGGVSVQGRIDAVFERVRGDGPRYLVVDWKSGRPVSAATKPDKVAYFVTQLRLYQRA 1091

Query: 911  LKDSYPNK--SLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
                       +  ++ +++ P    +    L     E
Sbjct: 1092 WAARMGVDASKVGAMVAFLAGPSHHTL--ESLEAMLGE 1127


>gi|21233616|ref|NP_639533.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|21115483|gb|AAM43415.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
          Length = 1372

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 125/890 (14%), Positives = 246/890 (27%), Gaps = 110/890 (12%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
            L  +   + +       ++  +       L         + K++  V  ++DL+      
Sbjct: 380  LFDALAVWQQADAVVRQWEGQRRIRLLHALRDDAVLQLAQRKRQRRVQTYDDLVDGVARA 439

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH--------- 210
            L+     A ++ ++  +    L+DE QDT   QW++   +                    
Sbjct: 440  LQGPQAEALVQ-RLRAQYAIALVDEFQDTDDRQWQIFSRVFGPEHGASGAAFAPDDDADF 498

Query: 211  ------SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                    PR L  +GD KQ+IY F G + +  L      Q+             L  +F
Sbjct: 499  DNAAGTPPPRLLALIGDPKQAIYGFRGGDVQTYLAAATTAQRAPP----------LEHNF 548

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-SQCN 323
            RS   +L  +D +++    A+    +       +         +Q  +         +  
Sbjct: 549  RSRPGVLAAIDALYAQAGYAEAFLTEGIAFHPVQPGTKRSDADLQRDDAAAPALTLWRAP 608

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVLVRK 382
                             +  +        I   +      S     R +QA DI VLVR 
Sbjct: 609  APPPPAKGKPKPWSAGRARELCTAACVAAIRGWLAGGRDGSASINGRPVQAGDIAVLVRS 668

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +   I      +     I  V   +  L       +L+AL + +L   DD      L 
Sbjct: 669  HGEATRIQQALGAV----GIPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALA 724

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            + L       I  +                       + +   +   +     Q   P  
Sbjct: 725  TVLIGEDAAAIAALEHD------------------GERHRRWQQQALDWRERWQRGGPLA 766

Query: 503  FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY------SSLQELISELEQ 556
                 LGA  G++      G   +    +        +  +         L   I+  + 
Sbjct: 767  LVGD-LGATHGQRLLALVDGERRLTNYLQLAELLQEADTRALGPHGLVDWLARRIANADD 825

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               T +    ++   V+I+T+H +KGLE P+VFL   G         +   +    +   
Sbjct: 826  NDETQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIGRADKSPGRHCVVHAPPHGRQ 885

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                    S       S      K   + E  RLLYVG+TRA   L I   +   +E+ +
Sbjct: 886  LHWNTSKWSADDTASWSTAETAWKHEQRAEDARLLYVGLTRAEHALWIATGAFHQHERTA 945

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK----- 731
                  D           V  +  T        +  + +   P     +R          
Sbjct: 946  LAPMLRDPAALQASAGAGVIALDDTAPPATLPRLPADDAVQVPAARLAQRHVVPDWWVYS 1005

Query: 732  -QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
               +          +      +      P++        +E+          G+ +H + 
Sbjct: 1006 FTQLANADAGSDPMASATLASSGGSDEPPASEPVSAPAEVEAFDPRFAGNRFGVAMHDVF 1065

Query: 791  QVIFTLP--------EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------ 836
            +                                +   E  + L  +TRL+ + +      
Sbjct: 1066 ERCDFAAWRNWCPGQPAPEGQAAAILEALQRGGYAQDELDDGLAMLTRLVGHTLTVTLPE 1125

Query: 837  ---MTTAMSCDSYSEVSVSGKINCPKKDIII-------------------------SGRI 868
               +         +E+     +   + D ++                         +G I
Sbjct: 1126 GTCLAAVPEPQRRNEMEFHFAMRPTRVDALLALLHRFGVVTERQAFGARQRLEGLMTGLI 1185

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
            D    +    ++ +YK++     + + +        +  Q  IY   L  
Sbjct: 1186 DLTYCADGRWYVLDYKSNRLPAYDPDALARAMAHSEYELQALIYTIALHR 1235


>gi|282856086|ref|ZP_06265372.1| DNA helicase II [Pyramidobacter piscolens W5455]
 gi|282586107|gb|EFB91389.1| DNA helicase II [Pyramidobacter piscolens W5455]
          Length = 716

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 106/647 (16%), Positives = 182/647 (28%), Gaps = 118/647 (18%)

Query: 93  SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY-----LNAHYEEAKKKNCVL 147
             + ++  +  +     +  R       +        A          +  + KK    L
Sbjct: 136 FAEARDMFEIRKLFKEPLYCRDMIALPLERLRKKYEEAAEPADILFYGYLYQQKKCFG-L 194

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           D+ DLI+ T  + ++      IR K  Q + +I+IDE QD   +Q+ ++ +L        
Sbjct: 195 DYNDLIVFTLHIFEREPE---IRRKWQQRLEYIMIDEFQDIDGLQYRLMEALCGF----- 246

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                 + LF VGD  Q+IY++ GA  + +L                   I +  ++RST
Sbjct: 247 -----HKNLFVVGDPDQTIYTWRGASVRYLLDF--------DARHLGTRTIMMMENYRST 293

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             IL   + +    E                       G V+ +    ++ +        
Sbjct: 294 PQILAAANSLIDANETRVKKDLLPVRAP---------GGPVRCFHGETAEDE-------- 336

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             AR IA  I  +                 K   VL R    T 
Sbjct: 337 ------------------ARWIAAEIEKLREAGAP----------YKSCAVLYRAHYLTR 368

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            +           KI           D   IKD +A  R +    DDLSF  ++ +P  N
Sbjct: 369 SLE----AAFLKEKIPYTIYAGVQFYDRAEIKDALAYLRLVA-YRDDLSFRRVVNAPRRN 423

Query: 448 FSEDDIFKI-CTQRHETETVYE---YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                +  +         ++++             ++    +  I      A      + 
Sbjct: 424 MGARRMAFLEEQAASRGCSLWDALTATLDDEIFKGTRAAAFVSLIERF-SAAPVLPVSEA 482

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
            + +L          +    + +D L E        E         +   L         
Sbjct: 483 LSGLLDESGYEAMLRTDGAQQRLDNLAELKQAVHEYETTCGEE-SGVADYLRHAALFTDG 541

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             + + + VR MTVH AKGLE   VFL      VF  +  + +                 
Sbjct: 542 DRAESADTVRFMTVHAAKGLEFSRVFLCGMNEGVFPTRRTRTL----------------- 584

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                                EE  RL +V MTRA D L + +    + +      + + 
Sbjct: 585 ------------------QAMEEERRLAFVAMTRARDALCLTEADGRTLDGSPRYPSRFI 626

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
           +  D                  +D     E               T 
Sbjct: 627 LDIDQGLLQYVAPPRPGLIEEARDRIAESERQLRRDSRIEALPPGTA 673


>gi|212693031|ref|ZP_03301159.1| hypothetical protein BACDOR_02538 [Bacteroides dorei DSM 17855]
 gi|212664398|gb|EEB24970.1| hypothetical protein BACDOR_02538 [Bacteroides dorei DSM 17855]
          Length = 1058

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 124/817 (15%), Positives = 263/817 (32%), Gaps = 107/817 (13%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    E   +N       L+ +TN LL        S+++  KI   I +++ID
Sbjct: 340  IRLLANIDEEVRELNHENNRF----LLSDTNALLHNLVKEGDSSFVFEKIGTTIRNVMID 395

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  R L  +                VGD KQSIY +   +   +   K  
Sbjct: 396  EFQDTSRMQWDNFRLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLKTN 449

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +           +  L  + RS A+I+   ++VF+                  +  +  
Sbjct: 450  IEAF------PVKVKTLTTNRRSAANIIHFNNEVFTAACEVLNNIYKEEQKKECKELKEA 503

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   +      +       +        +   +  ++      
Sbjct: 504  YN--------DVCQETYKDPGKGYVKVEFLSDTEDMTYMENTLYHLGEEVELLVAQG--- 552

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +Q KDI +LVRK +  PLI         +    +V ++ F L   LA+  +M 
Sbjct: 553  -------VQLKDIAILVRKNRSIPLIADYF---DKNTSYKIVSDEAFRLDASLAVCMIMD 602

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSED--DIFKICTQRHETETVYEYIQKFANCGISKF 481
              R++    + ++   +  +          D+  +     +    +++I++     +   
Sbjct: 603  SLRYLSQPGNRIAKAQLAAAYQNEVLHKGIDLNTLLLNEIDDYLPFDFIKEAEQLRLMPL 662

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              +++ +  L  ++                            +    L  F +      Q
Sbjct: 663  YELMEKLFNLFQMSC-------------------------IKQQDAYLCAFFDAVTEYLQ 697

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH- 600
            ++ S L   I+  E+     K   S     +RI+++H +KGLE   V L     ++ +  
Sbjct: 698  SNSSELSAFITYWEEK-LGSKTIPSGEVEGIRILSIHKSKGLEYHTVLLPFCDWKMENET 756

Query: 601  -KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
              H+       +   D  I      +  + +I  +   + +     +   LLYV  TRA 
Sbjct: 757  YNHLVWCAPRQAPFSDLDIVPINYSTAMQQSIYREEFLNERLQLWVDNLNLLYVAFTRAK 816

Query: 660  DQLIICKHSNTSNE-KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
              LII   +       +       DM   S+   E + ++      + +E          
Sbjct: 817  KNLIIYGKAEQKGTVSELLGNALSDMTGKSYATGEEIYELGTLYLSSHEE---------- 866

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                        ++ +   K+         +       +     +   +       ++++
Sbjct: 867  ------------EKQVSGNKLLTVARRLPIHLETLETNIEFKQSNRSAEFIRGEEETEDK 914

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               +G ++H L  VI           I         +  A++ + +       L +P++ 
Sbjct: 915  YIRQGQLLHNLFSVI--RTTDDVPPAIER-LRFEGIIESAQQEEQIRKLTEWALRHPLVK 971

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
               S     E+     I   +K ++ + R D++ +    + + ++K              
Sbjct: 972  EWYS--GRWELYNECAIIYREKGVLQTRRPDRVMMKDGEVIVVDFKFGKK--------RK 1021

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             +  Q+  Y  +L D      +   L YV   ++  I
Sbjct: 1022 AYNKQVKEYMDLLSDMGYEH-IRGYLWYVFNNELEEI 1057


>gi|257093991|ref|YP_003167632.1| exodeoxyribonuclease V subunit beta [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257046515|gb|ACV35703.1| exodeoxyribonuclease V, beta subunit [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1239

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 133/950 (14%), Positives = 269/950 (28%), Gaps = 141/950 (14%)

Query: 50   AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
            A+       +           S    +      N I                 + ++ + 
Sbjct: 275  ARAWTLWLASGDPLRAPDPEKS----KARLFTANFIAARKRNNQTPPTHPFFHAANDVLA 330

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                               +     A   + K++  V  F+D++ N +  L   D   W+
Sbjct: 331  RHASVTQALHLARLYLLRRMLDESGAALRQQKRRQRVQSFDDMLQNVDAALTSGDF-PWL 389

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
               +       LIDE QDT  +Q+ +   +      G     +   LF VGD KQ+IYSF
Sbjct: 390  AGFLRSRYPVALIDEFQDTDPLQYAIFSRIY-----GAGEAPAAGPLFLVGDPKQAIYSF 444

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
              A+    L  +R          Q  +   L  + RSTAD++   + +F+   +A  L+ 
Sbjct: 445  RNADLHTYLAARR----------QAGARYTLRHNQRSTADLIAASNALFTANPHAFILAG 494

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY---FDSLPQESSASILA 346
             +   +                   ++ H  +       W       + L +  +   + 
Sbjct: 495  LNYEPVTVG----------DKPRPPLTDHSEEDPAALRVWRLPAANGEYLLRGEAKKQVL 544

Query: 347  RRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            R  A  ++ ++           +R +   DI +LV+          L R       I  V
Sbjct: 545  RATAGEVARLLRAAQAGRITLGERALAPGDIAILVKSHAQGR----LLRDALLQVGIGSV 600

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
               +  +      +DL  +   I            L + L   +   +  +     E   
Sbjct: 601  ELSQHSIFHTPDAEDLERVLLAIREPARPSLLYSALATELLGLNATGVAAL--AADEMGL 658

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +    +          +     +   +              +L    G ++  +      
Sbjct: 659  LQTIARFSGYRETWLRRGFGVMLRAWMDS------EAVAFRLLARSDGERRLTNLL---- 708

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGL 583
               L E L     ++    + L+ L S                ++ N V+I+T+H +KGL
Sbjct: 709  --HLGELLQQASADQPAPDALLRWLASRRRDDGAEEVHQLRLESDRNLVQIVTIHKSKGL 766

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E  +VF          H+           +DD G+P+   + +       ++ +  ++  
Sbjct: 767  EYGIVFCPFLWDG---HQSNFGEDEGKEYHDDDGLPVIDFRLELDAADAEEIKRRRREEK 823

Query: 644  QEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYD-------------- 687
              E+ RLLYV +TRA+ +  +    ++N +  K S  +  + ++                
Sbjct: 824  DAEFMRLLYVALTRAAQRCYLVAGCYANLAFGKPSMAQGTHSLLNWLVAGKDMSYADWLK 883

Query: 688  ---SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
               S    E   +   T +               P  +      ++  L+  + +     
Sbjct: 884  HKRSPEEIEAAWRALATTAGPPLSLSDLPGEAPTPLASTAVSAASLSALVAPRTMAAGWR 943

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR--------------GLIIHKLL 790
                + +        S  D  G+             +               G  +H L 
Sbjct: 944  IGSFSSLQHGADSEASASDHDGRAVPALPAVSGPAADIGPDDILLFARGPAAGDCVHALF 1003

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLW-----------PAKEYKNLLLSITRL-------- 831
            + I      +    I      +               PA+  + LL  +           
Sbjct: 1004 ERIDFTDPGRWPAIIDEVLASHPLSPVGPPNGDSARRPARMLRRLLDDVLATSLPGGIVL 1063

Query: 832  -------------------LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
                               L  P +   ++   Y       ++  P  D  + G ID + 
Sbjct: 1064 STVGRRQRLVELGFNLPAGLTAPRLNDWLAAHGYP----LPRLGFPPLDGYLKGFIDLVF 1119

Query: 873  ISQQNIFIFEYKTHHHVPQEIE--------HIPYT-HIAQLSIYEKILKD 913
                   + ++K++H      +         +    +  Q  IY   L  
Sbjct: 1120 CHANRFHVLDWKSNHLGFAAADYGQQQVAAAMAEHGYHLQYLIYCVALHR 1169


>gi|150005966|ref|YP_001300710.1| ATP-dependent helicase [Bacteroides vulgatus ATCC 8482]
 gi|149934390|gb|ABR41088.1| ATP-dependent helicase [Bacteroides vulgatus ATCC 8482]
          Length = 1058

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 127/814 (15%), Positives = 253/814 (31%), Gaps = 101/814 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            + L   ++    E   +N       L+ +TN LL        S+++  KI   I +++ID
Sbjct: 340  IRLLANIDEEVRELNHENNRF----LLSDTNALLHNLVKEGDSSFVFEKIGTTIRNVMID 395

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW+  R L  +                VGD KQSIY +   +   +   K  
Sbjct: 396  EFQDTSRMQWDNFRLLLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNGLKTN 449

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +           +  L  + RS A+I+   ++VF+                  +  +  
Sbjct: 450  IEAF------PVKVKTLTTNRRSAANIIHFNNEVFTAACEVLNNIYKEEQKKECKELKEA 503

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                       V Q   +   +      +       +        +   +  ++      
Sbjct: 504  YN--------DVCQETYKDPGKGYVKVEFLSDTEDMTYMENTLHHLGEEVELLVAQG--- 552

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +Q KDI +LVRK +  PLI         +    +V ++ F L   LA+  +M 
Sbjct: 553  -------VQLKDIAILVRKNRSIPLIADYF---DKNTSYKIVSDEAFRLDASLAVCMIMD 602

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
              R++   E+ ++   +  +            +         +   I  +          
Sbjct: 603  GLRYLSQPENRIAKAQLAAAY-------QNEVLHKGIDLNTLLLNGIDDYLPF------D 649

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             IK   +L         ++    +         F      +    L  F +      Q++
Sbjct: 650  FIKEAEQLR----LMPLYELMEKLFNL------FQMSCIEQQDAYLCAFFDAVTEYLQSN 699

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH--K 601
             S L   I+  E+     K   S     +RI+++H +KGLE   V L     ++ +    
Sbjct: 700  SSELSAFITYWEEK-LGSKTIPSGEVEGIRILSIHKSKGLEYHTVLLPFCDWKMENETYN 758

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            H+       +   D  I      +  + +I  +   + +     +   LLYV  TRA   
Sbjct: 759  HLVWCAPRQAPFSDLDIVPINYSTAMQQSIYREEFLNERLQLWVDNLNLLYVAFTRAKKN 818

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            LII   +           +                     + +    +   E        
Sbjct: 819  LIIYGKAEQKGTVSELLGS-------------------ALSDMTGKSYATGEEIYELGTL 859

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
                 EE  +   ++     +        +        S    +     E   ++++   
Sbjct: 860  YLSSHEEEKQVSGNKLLTVARRLPIHLETLETNIEFKQSNRSAEFIRGEEE--TEDKYIR 917

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            +G ++H L  VI           I         +  A++ + +       L +P++    
Sbjct: 918  QGQLLHNLFSVI--RTPDDVPPAIER-LRFEGIIESAQQEEQIRKLTEWALRHPLVKEWY 974

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
            S     E+     I   +K ++ + R D++ +    + + ++K              T+ 
Sbjct: 975  SGS--WELYNECAIIYREKGVLQTRRPDRVMMKDGEVIVVDFKFGKK--------RKTYN 1024

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             Q+  Y  +L D      +   L YV   ++  I
Sbjct: 1025 KQVKEYMDLLSDMGYEH-IRGYLWYVFNNELEEI 1057


>gi|313884107|ref|ZP_07817873.1| ATP-dependent nuclease subunit A [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620554|gb|EFR31977.1| ATP-dependent nuclease subunit A [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 1321

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 109/632 (17%), Positives = 213/632 (33%), Gaps = 58/632 (9%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + +++ +L +K  ++   +                   + L +       E K+   +
Sbjct: 323 KSLREQAKNLIKKQVQTLFPYPVADQMKVEVMNRPPLSKLMILCQNFITELNELKQSQNL 382

Query: 147 LDFEDLIINTNDLL------KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           +D+ DL   T D+L       K    +            IL+DE QD + IQ E++  L 
Sbjct: 383 IDYNDLEHLTLDILAPIDPETKERKPSLAALTYQATFKEILVDEYQDINEIQAEILAWLA 442

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            D+      +      F VGD KQSIY F  AEP+  L +    Q+          ++ L
Sbjct: 443 HDYRPDLTHNQ-----FMVGDVKQSIYGFRMAEPQLFLNKYLSYQE----VTNPEQLVIL 493

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI----GQVGTVQLWEQVVS 316
             ++RS  D+L   + +F    +      +  T  R  ++         G +QL   +  
Sbjct: 494 NKNYRSRHDLLQFTNFIFERIMDLNFGQMNYQTAERLVTANPSFIEADEGEIQLKLLLNV 553

Query: 317 QHDSQ-------CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK- 368
           + DS+           +       D    +++       +   I   +    +  +  K 
Sbjct: 554 KTDSEEEEAEEVDQADETLELGVMDGPVFDAAVEAEIALVIADIKARVQVGELIYDKSKE 613

Query: 369 ------------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                       R +  KD ++L   R          +  +    I +            
Sbjct: 614 IKKANGQITYAKRPVTYKDFVILSATRGPFAAAVNQFQEAE----IPLKAQKVEHYFQRF 669

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY------- 469
            I+ ++AL + I +   D+ F  +LKS     +++D+ +I   + +      +       
Sbjct: 670 EIQLVLALLQVIDNPYQDIPFAAILKSYFVGLTDEDLAQIRIYQPQGSFYAAFLQLVHDD 729

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVI 526
               +      +K    +      +H+++     D    I    +      +   G + +
Sbjct: 730 QVNDEPLKHIKNKGLSFLVNYKNWVHLSKTLPLEDLIWTIYLDSQYLNYVALLTNGKQRM 789

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAK 581
             L    +      +  YS L   +  +     E+           + N VRIMTVH +K
Sbjct: 790 ANLRALTSRAQDFYKLGYSGLANFVYYIQQIIKEEKDLAEPLVLDQDENFVRIMTVHASK 849

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE P+V+L++TG Q        ++ +                 +  + I         +
Sbjct: 850 GLEYPIVYLLNTGKQFNLSDGKSRVLLSKQYGIASDYYDLNSMQQFPSLIKKAFQLETIE 909

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
             + E  R LYV +TR   +L+I        +
Sbjct: 910 RLKAEEMRKLYVALTRCEQKLVIVGSIANERK 941



 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/299 (10%), Positives = 83/299 (27%), Gaps = 40/299 (13%)

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
            +         S+ + +        + ++ ++  A ++   H   +     +++ +L    
Sbjct: 1019 ESAHQSFNPLSWIDSQIANIESEPSILSTNQSQALDFDYPHQLASRTSSYQSVSELKRLY 1078

Query: 738  KIPKKLFSPIKNDINEPYILNPSTI--------DTKGKTNLESLLSDNQTFNRGLIIHKL 789
            + P  L      D                    D+    +     S       G + H  
Sbjct: 1079 EEPDNLSLSYYRDRRPQASKAGQDQIQGIRYTQDSFKSPSFIESESTISATEIGSLTHLY 1138

Query: 790  LQVIFTLPEHKRKNFITSYC-----TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--S 842
            LQ++            +                 K   + + SI   +++ +        
Sbjct: 1139 LQLLPWQALEVESADSSMQLKYVIDQMEGDYQLRKLPDSQIESIMWFIQSDLAQQLRMRQ 1198

Query: 843  CDSYSEVSVSGKINC----------------PKKDIIISGRIDQISISQQNIFIFEYKTH 886
                 E + S  +                   ++ ++I G +D        I + +YKT+
Sbjct: 1199 EQIKKEQAFSLLLPAKKMFAGQFDQLDIQSLDQEQLLIHGVVDLYIELADQIILIDYKTN 1258

Query: 887  H-------HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL-IYVSEPKVFIIPQ 937
                       ++I+ +   +  Q SIY   L     +K +     + +   ++  +  
Sbjct: 1259 RFRDLAAYSRQEQIDRLKDGYKFQFSIYRHAL-QLAKHKPVTAAYMVLLDFKEIVKMDD 1316


>gi|325972020|ref|YP_004248211.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324027258|gb|ADY14017.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 754

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 101/613 (16%), Positives = 193/613 (31%), Gaps = 122/613 (19%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +L     +    +DR        S+L      K +   YE+  +    +DF DLI  + +
Sbjct: 137 ELDPVMRKISYAKDRALRPSDNLSSLKVDGTFKRMYEAYEKKLRNIGNVDFADLIGRSIE 196

Query: 159 LLKK-RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
           LL++  +V  W+     +  + IL+DE QD++  Q+ +++ L                + 
Sbjct: 197 LLQEKPEVLDWVH----RRFSMILVDEYQDSNAAQFNLLKLLAGQ----------GCFIC 242

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIY F GAE + +L    +             II+L  ++RST  IL V + V
Sbjct: 243 VVGDDDQSIYRFRGAEVQNILSFPELY--------AGTRIIKLEQNYRSTKHILDVANSV 294

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
               +                           LW                          
Sbjct: 295 IQHNKGRHAKK---------------------LWTAKTKGSKPNLI-------------- 319

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                          I +        SN      +  +  VL R    +     + + L 
Sbjct: 320 --------------YIQDEQDEALRVSNILLSDKKFNESAVLYRTNAQSVAFETVFKRL- 364

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               I           D   +KD +AL   + +++D+++F  M+  P        +  I 
Sbjct: 365 ---SIPYKVVGALQFYDREEVKDSLALLFLLTNEKDEVNFKRMINKPARGIGPGALDSIL 421

Query: 458 TQRHETETVYEYIQKFANCG-------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           +   +T+     + + A           S     ++       +       D    ++  
Sbjct: 422 SFASQTDGSIFAMLRLAIAQNVLSAKAKSGASQFLRMFEHAQAMLGEGELVDCANFLIRE 481

Query: 511 KK---GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                  Q+  S+     +  L+  +N     + +    L   + +L   P T+ R    
Sbjct: 482 SGLLDYYQEVDSQNSTGKVGNLEALVNALSSYDSS-LEGLLLFLEQLSLDPTTLGREDPR 540

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           +   V ++T+H  KGLE   VF+     ++F                             
Sbjct: 541 DKEGVTLITMHNTKGLEFDRVFVAGLEEELFPG--------------------------- 573

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                     +      EE  R+ YV +TRA ++L +          +++ +     + +
Sbjct: 574 --------RANESDDDIEEERRIFYVAVTRARNELYLLCARARKIWGRTSFQHPSRFLDE 625

Query: 688 SFHNDERVKKIKL 700
              +   V+ I+ 
Sbjct: 626 VDSSLVNVQGIRP 638


>gi|94496824|ref|ZP_01303399.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
 gi|94423837|gb|EAT08863.1| UvrD/REP helicase [Sphingomonas sp. SKA58]
          Length = 1057

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 136/939 (14%), Positives = 282/939 (30%), Gaps = 96/939 (10%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ++ E + + +  L       I   V+      +         L      +     +    
Sbjct: 193  DTAERLLRSIDALLERFPRAIADSVTTKTARKDLRD-NFKDLLATQRALKQGRHDWRAWQ 251

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
                    T +         +   +L   + ++ +    +                +  A
Sbjct: 252  KLRNLWVSTTRTKAP-----EGYDELATAVIEAAEALPFLPGPR--DDAMSHAEGLVRAA 304

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + + A Y  AK +  V+D+ D++ N   +L ++ +V+  +  +    I+ ++IDE QDTS
Sbjct: 305  QRVMADYGRAKAEIGVIDYGDMVANAAKMLAERNEVTEAVLAE----IDCVIIDEFQDTS 360

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             IQ+  +  L                   VGD KQ+I  F GA+P+            A 
Sbjct: 361  PIQFAFLWQLAR----------RAPRTLIVGDNKQAIMGFQGADPRL-----------AE 399

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG-TV 308
                +     L  ++RSTA I+  V+ +        G             +R G  G  +
Sbjct: 400  ALSLQHPHAPLERNWRSTAPIMEFVNGL--------GQYLFGERYSSLAPTRTGGDGTAL 451

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            ++ EQ+VS  +                      +  +A RIA  +            G +
Sbjct: 452  EVIEQMVSGRERGTKQNP----------NPAKPSHNVAERIADILDKNEMIIEDRHTGVR 501

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R +  +DI VL +  +         R L     + V   +         ++  +     +
Sbjct: 502  RPLAPRDIAVLCQTSRQCADYAEKLRVL----GLPVRLAEN-GWWKSPVVQCAVFALSLV 556

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                D       L          D+    T       +     +       K +  +   
Sbjct: 557  ADPAD---AHAALCFASLGPERLDLGTGLTALTAGTAIPATGLEQLKALHDKARG-LPAD 612

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL--NFTLRNEQNSYSS 546
              +  +       ++  ++    + R                E                 
Sbjct: 613  AVVAQVIAVAGLREWCEMLPDPLQMRADLARFEAEAAAFACAEPAPREAAGFYGNGIPVF 672

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            L  L +       +   A     + + ++T H++KG E P+V +           H  ++
Sbjct: 673  LGWLEARATSQDDSRPHASGTETDGIEVVTWHSSKGREWPLVIVATMAHDRNPRAHEFRI 732

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN----RLLYVGMTRASDQL 662
             I P  +D   I      S S +    + ++       EE      RLLYV +TRA D+L
Sbjct: 733  EI-PDFDDFDAILAKADLSYSADYAAEEALERALAQRSEEAREDCRRLLYVALTRARDRL 791

Query: 663  IICKHSNTSNEKKSNQRTWYDMVY-------DSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            +I         K+ N      +V        +                 + +   A++  
Sbjct: 792  VIEWPKPPKEWKEGNISPAQMLVEECGFAIGNGCITLGSTNFPARLTVGSDEIAAAFDGG 851

Query: 716  THHPENTPLEREETIKQ-LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
               P          + Q +M   +      S +   +  P  L  S +    +     L+
Sbjct: 852  FVAPAPIARAARHAVVQGVMPLAEAIVAPSSALSTHLPLPTKLLTSRLAPGIELANADLV 911

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
                  ++G  +H+ L++    PE   K       + +     A +              
Sbjct: 912  ---LATDKGTALHEGLRICLQRPELFGKVAAHCQVSASEASAMAAQAD------------ 956

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI-DQISISQQNIFIFEYKTHHHVPQEI 893
              + + ++   ++ + V   ++    D      I D ++  +    I ++K+      + 
Sbjct: 957  -ALRSNLAARGFATLYVEQPLDVALADGTTQCVILDLLAQGRDGFMIVDHKSGPVP--DH 1013

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            E    T+  QL+ Y   ++     K     + +    ++
Sbjct: 1014 EARYATYWPQLAAYAGAVESMGAGKVTHAGVFWTHTGEL 1052


>gi|319440134|ref|ZP_07989290.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
            domain-containing [Corynebacterium variabile DSM 44702]
          Length = 1075

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 151/960 (15%), Positives = 296/960 (30%), Gaps = 112/960 (11%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G + +++   +      LP    +D+        +     +L +   L++ ++    E  
Sbjct: 197  GTAPSDTRAALTTAARNLPRQLRADVED--GTIAKRSADGVLTRLDALERFARRVRRERD 254

Query: 66   FSLLSSFFLTQKFT-PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
                S +  T +   P  +  T+ I +    +    +   D    +RD  +T        
Sbjct: 255  SIPWSDWLKTAEGKVPGVSAPTKPIKEAYGSVTSAAEILAD--PALRDDLDTL-----IR 307

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV----SAWIRYKIDQEINHI 180
               T A    + Y + K    ++DF D    T  LL+   V       +R  +      +
Sbjct: 308  LVFTTAASCLSAYADYKDALGLIDFTDQEQLTLRLLRGDGVTDATRDAVRETLAARFRIL 367

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDTS +Q  +   L                +  VGD KQSIY F G++P  +   
Sbjct: 368  VVDEFQDTSPLQLALFTELAGLVDE----------VIWVGDPKQSIYGFRGSDPALMDSA 417

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                +     AG       L  S+R+    L + +++FS                     
Sbjct: 418  ---VEAITDPAGLAGRSEILAHSYRTRQAPLDLSNRLFSRLFT----------------- 457

Query: 301  RIGQVGTVQL-WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                 G V+L   Q+ ++  +    +    T  +      +S ++   RI+  I  +   
Sbjct: 458  -----GDVELSVPQIRAEAYAADGARAAGETVTWPHTEGRASKNVWFERISDGIGALAE- 511

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                     R   +    +LVR       I    R       I   G     L+      
Sbjct: 512  ---------RDADSGSRAILVRTNSHAAEIRTALRA----AGIPCAG-GGVPLSTTREGS 557

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
             + A    +L + D  + V M+     + +  D F   T   + +   E +Q +      
Sbjct: 558  LVTAALALLLDKADTQALVEMITLMPDHSAHADWFDTLTALPDRDACREQLQLWTEDP-- 615

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLR 538
                V+  +  L          +    ++ A   R +  +  G  E    +   L     
Sbjct: 616  ----VLAPVTALRSALSELPVAELVAAVVDALDLRGRVAASTGPAERTGSVTGILQAAAD 671

Query: 539  NEQN-----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                       +++  +++ L           +A    V + TVH AKGLE   V +   
Sbjct: 672  FAAEQESAGEPATVAGVLAHL--NDEETVSTPTAEPGAVEVHTVHQAKGLEWDTVIVAMP 729

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI----------VSDLIKHLKKST 643
             S+         +     L  D  +     +      +           +D  +  + + 
Sbjct: 730  DSRERFTPAGVWVQPSTPLTMDDPLAGRHLRFWPDTLLAHSGVKEALAATDAQQARRTTE 789

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
              E  RLLYV MTR+  + ++  +S+T+         W  +       DE V  +  ++ 
Sbjct: 790  LLEEQRLLYVAMTRSKFRTVLAPYSSTAK--------WRALAMAGLDADELVVLLADSDP 841

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
            +          +     +   + +     +   +      F+P   +      L+    +
Sbjct: 842  VPALPRETVVEAARRFTSPAGQLDVNRGLVDAGRHNVAATFAPSGAEATPETALSAVVSE 901

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTKN--AKLWPAKE 820
                          +    G  IH  L   + +L    ++       T      +   ++
Sbjct: 902  VADLGPALVSGGGPEWNKVGDCIHSYLAAPLESLDAAMKQQVAARLVTNWSVGAVVSPEQ 961

Query: 821  YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI----SQQ 876
                     R L + +  TA+     SEV  +             G IDQ+      +  
Sbjct: 962  VVECGERWQRYLRDDLGATAVD----SEVPFTWT---NDAHQRAQGWIDQLVTVPGDNGD 1014

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
               I ++KT +       H+   ++ Q+ +Y + L D         L+       V  + 
Sbjct: 1015 RQIIVDHKT-YPGTDPTGHVAAKYLGQMEVYRRALTDITGTPPARILIHLPLLGSVVEVD 1073


>gi|295676242|ref|YP_003604766.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1002]
 gi|295436085|gb|ADG15255.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1002]
          Length = 1243

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 128/984 (13%), Positives = 272/984 (27%), Gaps = 130/984 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             +W      +  +       +          +  +   +      +  +      L    
Sbjct: 240  AIWQAERDAIVALLAEAQERLSKTTHKPDHVSAAIAAWTDYFARGDCHAPPPRAALKLTA 299

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            +  K          +    E    +    +   +     +        L  A    A   
Sbjct: 300  SALKKATKARFEPPAHPFFEH-ADALAAAVVAAEAAQRARWLGLVQTWLDFAP---AELV 355

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 356  TRKRTRRVVSFDDLLANLYRALAAHP---WLADALRSRYPAALIDEFQDTDPLQFAIFSR 412

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 413  IFA----------PAGPLFLVGDPKQAIYSFRAADLHTYLAAR----------ESASACY 452

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RSTA I+   +++F     A  L       + ++  R G+       +   S  
Sbjct: 453  TLAVNQRSTAPIVDACNRIFEANPQAFVLDG-----LDYQPVRAGERRRAPFADPDASGG 507

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
            D +        T+      Q +++   A  I   +  + G          + +   DI V
Sbjct: 508  DFRIWTLPRGETALSKRDAQRAASEACAAEI---VRLLRGAREGVVTIGDKPLAPGDIAV 564

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            LV+  K   L+  +       + +  V   +  +   L  + +  +   I +  D     
Sbjct: 565  LVQTHKQGSLVKRVLAA----WGVGSVELAQASVFATLDAEQIERVLAAIDTPGDLRRLR 620

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-FQHVIKYIHELIHIAQF 497
              L +         ++++             +    +          ++       +   
Sbjct: 621  AALATDWLGLDAAALWRLTQVADAPAAETGGVADSTSALDPADAMGWVERFSRYRMLWHE 680

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISE 553
                  +  ++   +  Q+ ++    E      + L E +      +     +L+ L ++
Sbjct: 681  RGFAVMWRTLMRELRVAQRLVAGVDGERRLTNVNHLAELVQTRAATQPGIAPTLRWLAAQ 740

Query: 554  LEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
             EQ      +    ++ N V+I+TVH +KGLE  VVF                +      
Sbjct: 741  REQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPSSGLPDAREY 800

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNT 670
            +DD G  +       +        ++  +    E  RL+YV +TRA  +  +    + ++
Sbjct: 801  HDDSGDAVLHYGCDEQEA--ERASRYAVREQAAERARLVYVALTRAVYRCYLVAGTYLSS 858

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             + K+S +     +V  S H  +         +     W A           P       
Sbjct: 859  RSTKESRRSVLNWLVGGSGHTFDAWLAEPPDEAALAASWHALAGGPVTLRALPEVTRRVP 918

Query: 731  -----------------------------------------KQLMDEQKIPKKLFSPIKN 749
                                                           Q+  +     I +
Sbjct: 919  LETLQDHGAHLRARANRRALRDQWRMASFSGLIAAGSRSADAHAHAPQEDLRPDHDEIAD 978

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
             +    +L P           + +L+  +    G  +H++ ++          + I    
Sbjct: 979  ALQSAPLLVPLAATNAPAHADDDILAFPRGAAAGDCLHRMFELADFSDARSWPDAIRGAL 1038

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSV--------- 851
             +       +    L   + RL+ +           +         +E+           
Sbjct: 1039 RERPAPAAPELAARLPAMMHRLIADVVSTELVPGMTLARLDPRRRLNELEFLFAAPSLDF 1098

Query: 852  -------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---- 894
                            +        + G ID I       +I ++K++H      +    
Sbjct: 1099 PALRELLIEYGYPDVALEPGVLRGYVKGFIDMIVEHDGRFWIVDWKSNHLGDTAADYAAA 1158

Query: 895  -----HIPYTHIAQLSIYEKILKD 913
                    + +  Q  +Y   L  
Sbjct: 1159 PLEAAMASHAYHLQALLYTVALHR 1182


>gi|15839269|ref|NP_299957.1| ATP-dependent DNA helicase [Xylella fastidiosa 9a5c]
 gi|9107919|gb|AAF85477.1|AE004074_1 ATP-dependent DNA helicase [Xylella fastidiosa 9a5c]
          Length = 680

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 214/702 (30%), Gaps = 129/702 (18%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
              + K +  S   G       A  L+               S F          +++  
Sbjct: 87  RERVAKQIKSSRADGLTICTFHALGLKFLQIEHDAVGLKPGFSVFDADDADAQINDLLHG 146

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
                  D K ++ ++++  +         +  +           L A Y+        +
Sbjct: 147 AKQDVIDDTKRRISRAKNAGLSPEQALAAARTTREME-----VATLYARYQARLIAFNAV 201

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI     +L+  D    +     + I ++L+DE QDT+  Q+ +++ L        
Sbjct: 202 DFDDLIRLPVQILETSD---QVAMAWRERIGYLLVDECQDTNDAQYRLLKVLA------- 251

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S       VGD+ QSIY++ GA  + +L+ +R   +          +I+L  ++R  
Sbjct: 252 ---SPRGNFTCVGDDDQSIYAWRGANAENLLQLERDYPQ--------LKVIKLEQNYRCP 300

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             +L   + + +   +A   +  S                +++W                
Sbjct: 301 NRVLRAANALIAHNPHAHLKTLWSDQ---------KDGERIRIW---------------- 335

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                     +   +   A +IA  IS +         G  + +   D  +L R    + 
Sbjct: 336 ----------ECRDSEHEAEKIAGEISYL---------GDAKQVPWSDFCILFRGNFQSR 376

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            +    + L+    I           +   +K+L++  R +++ +DD +F+  ++SP   
Sbjct: 377 PLEKALQLLR----IPYHLTGGTAFLERQEVKNLLSWLRLLVNPDDDAAFLRAVQSPKRE 432

Query: 448 FSEDDIFKICTQRHETETVYE-------YIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                + K+       +            +Q+      +        + EL       S 
Sbjct: 433 VGSTSLAKLAELAAAKQMPMSRAAESLGALQQLPARAANGLNKFTDILRELRQQVSRVSA 492

Query: 501 HDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
            +    +        +   +  +E         ++E        E   +     +   + 
Sbjct: 493 AELVRRLAEVSGLLTELREQSNDEASYQRRKRNVEEL---AEWFEGGPFG--ASVGDLVS 547

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
           Q     +       N+VR+MT+H +KGLE   VF+      V  H+              
Sbjct: 548 QLALLSRNDKDDGGNQVRMMTLHASKGLEFRYVFIAGCEDGVLPHEVSL----------- 596

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK---HSNTSN 672
                                   ++   +E  RLLYVG+TRA +QL +           
Sbjct: 597 ------------------------EEGNVQEERRLLYVGITRAKEQLWMSYSKCARRFGE 632

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
             +     ++D +       +    +       +        
Sbjct: 633 RVRFKPSRFFDELPAEELQRDGADPVVDAERKQERAKAGLAA 674


>gi|118467867|ref|YP_885717.1| exodeoxyribonuclease V subunit beta [Mycobacterium smegmatis str. MC2
            155]
 gi|5678922|gb|AAD46808.1|AF157643_2 RecB [Mycobacterium smegmatis]
 gi|118169154|gb|ABK70050.1| exodeoxyribonuclease V, beta subunit [Mycobacterium smegmatis str.
            MC2 155]
          Length = 1083

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 136/977 (13%), Positives = 263/977 (26%), Gaps = 177/977 (18%)

Query: 38   SMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK 97
                G         TL ++      E    L  + F  QK  P+ +              
Sbjct: 126  LKSLGVAGDSDAGVTLVESLDDLVSEIVDDLYLAHFGGQKDDPELSYP------------ 173

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIIN 155
            E LK ++        +         + A++ L  A+ + A  E  K++  VL ++DL+  
Sbjct: 174  EALKLARVVVGNPATQLRPRDPDPDSPAAVRLKFARDVLAELEIRKRRRGVLGYDDLLTR 233

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              D L+  D  A +  ++ Q    +++DE QDT  +QW+VI              S   T
Sbjct: 234  LADALEPEDSPARV--RMQQRWPIVMVDEFQDTDPVQWQVIER----------AFSGRST 281

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            L  +GD KQ+IY+F G +    LR                    L  ++RS   ++  + 
Sbjct: 282  LVLIGDPKQAIYAFRGGDIATYLRAAA----------TAGDKQTLGTNWRSDRALVDRLQ 331

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             V    +             RH+  R+        +   V                    
Sbjct: 332  AVLRGAQLGGPDIVVHDVQARHQGHRLVGAPRNDPFRLRVVSRKPGNTRVI--------- 382

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             P +     + R +A  IS ++ +   + +   + +QAKDI V+    KD          
Sbjct: 383  -PIDQLRRHIGRDLAADISALLNSGATWCD---QPVQAKDIAVITETHKDARACHAALLA 438

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  I  V      +    A +D + L                  +  F  + + +  
Sbjct: 439  ----AGIPAVYTGDSDVFTSEAAEDWLYLLEAFDQPHRPGLVRAAAATMFFGETAESLAA 494

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                  +                     V   + E    A+       F     A  G++
Sbjct: 495  GGDALTD--------------------RVADTLREWAGHARERGVAAIFEAAQLAGMGKR 534

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANH 569
                + G  ++  L                 L  L   L              R   ++ 
Sbjct: 535  VLSWQGGERLMTDLAHMTQLLQDTAHREGFGLAALRDWLRTQRSERGGESERNRRLDSDA 594

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              V+IMTV  +KGL+ PVV+L       F+         +   +DD    + +       
Sbjct: 595  AAVQIMTVWVSKGLQFPVVYLP------FAFNRYVPEPDLVLFHDDGQRCLHVG------ 642

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV---- 685
                 + +  +     + +RL YV +TRA  Q++     +         R          
Sbjct: 643  GADPAVARAGRAEAAGDDSRLTYVALTRAQSQVVAWWAPSYDEPNGGLSRLMRGRAPGEA 702

Query: 686  -------YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                        +++ +++++   +               P       E+   +      
Sbjct: 703  IVPDKCSPPKISDEDALERLRAWEAAGGPVIEESVIGAVSPVPPEPAPEDLAARKFFRAI 762

Query: 739  IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD-------------------NQT 779
                  +     +                T  +    D                      
Sbjct: 763  DMAWKRTSYSGLLRAAETAGVGVSSEPEVTERDDEFDDIPVVAPAEGADVPSPMAHLPTG 822

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--- 836
               G ++H +L+      E       T     +       E   L  ++  + + P+   
Sbjct: 823  AAFGSLVHAVLETADPFAEDLTAELATHIDAHSQHWPVEVETAELAAALVPMHDTPLGPL 882

Query: 837  -----MTTAMSCDSYSEVSVSGK------------------------------------- 854
                 +      D   E+                                          
Sbjct: 883  APGLTLRQIGLRDRLCELDFEFPMAGGDLRGGRFARLSDVGELLREYLPADDPLAVYAER 942

Query: 855  -----INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                 +        +SG +D +    +   I +YKT+     +       +        +
Sbjct: 943  LSTGILGVQPLRGYLSGSVDAVLRVGEKFVIVDYKTNWLGTGDGTLTAADYGR-----RR 997

Query: 910  ILKDS-YPNKSLVCLLI 925
            +++   + +  L  LL 
Sbjct: 998  MVEAMLHSDYPLQALLY 1014


>gi|260582454|ref|ZP_05850245.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae NT127]
 gi|260094434|gb|EEW78331.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae NT127]
          Length = 1211

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 140/976 (14%), Positives = 294/976 (30%), Gaps = 136/976 (13%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248  ESADEISAIITNELVKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71   SFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             +FL         +     ++    +P       + +     +       K+        
Sbjct: 308  DYFLQSSIEKNCEESTDKNKDKKTATPFYSPIFAELEKRVNALMTPDLLSKL-----TLY 362

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               + L     + K  +    F+DL+    + L+       +   I  +    +IDE QD
Sbjct: 363  HYRQGLQQKLLDYKLNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAMIDEFQD 421

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T   Q+ +   +  D                +GD KQ+IY F GA+    L+     Q R
Sbjct: 422  TDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSR 475

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                        L  ++RS   ++  V+ +F  P+        + T +  R         
Sbjct: 476  FE----------LTKNYRSEKHLVDGVNALFDFPQLPFIYQNINFTAVDSR--------- 516

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-SNG 366
                + +    + +  P    + +  D + +   A I A  I + + + +    +F +  
Sbjct: 517  ---DDHLRFYLNGKAEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAVENQAVFQNED 573

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              + +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+L  + +
Sbjct: 574  TCKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKELAWVLK 630

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
              L+  +    +  + + LF  +  DI +I           E   +      +++Q   +
Sbjct: 631  ACLNVAERP-ILNAIATALFGLNAADIHQIQQN--------EADWQRWADSFAQYQQTWQ 681

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                L  + Q          +L    G +             L E L       ++  + 
Sbjct: 682  RQGILAMLHQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATLHESEAAL 735

Query: 547  LQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L     +++ +     +    +    V+I+T+H +KGLE  +V+L             K 
Sbjct: 736  LSWFEKQIQGEGRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLA-APSKDPSKKD 794

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ---- 661
            ++I  S   D  +     ++          +  L + T  E  RLLYV +TRA  Q    
Sbjct: 795  INIYYSKERDETLWDIENRN----------LNALCEETFAEELRLLYVALTRAKYQMAFV 844

Query: 662  -----------LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
                       L          ++ +   +           ++    +++    N +++ 
Sbjct: 845  LPTQFDKKWNALHYVLSQGEIGKEINLSDSKNTETLLQTFKEKMQDNVEICTKPNLEDFT 904

Query: 711  AYEWSTHHPENTPLE---------------REETIKQLMDEQKIPKKLFSPIKNDINEPY 755
            A   +T + +    E                 E   +  +           + +D  +  
Sbjct: 905  ALSINTKNDDLKAAEFTGNIEQDWRITSFTSIEQAHRRQNYFTESAGKKHAVFDDAKDYD 964

Query: 756  ILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
              N   + T      +S  L   +    G  +H+  +  +       +       +    
Sbjct: 965  SQNAIEMSTALLNENKSNILDLPRGKQVGTALHRHFENCYFSDLANTEEIDKLRQSLQLD 1024

Query: 815  LWPAKEYKNLLLSITRL-LENP---MMTTAMSCDSYSEVSV------------------- 851
                +  +N L  I+   L N     +    + D   E+                     
Sbjct: 1025 ETFTEPLQNWLQQISHTPLSNEIGIALADLANKDCIKEMPFYLAIREHFDVEAFNRTLKA 1084

Query: 852  -----SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHIPY---- 898
                 S  +   +   ++ G ID +       ++ +YK++           E +      
Sbjct: 1085 HHHLPSEPLQFEQIQGMVRGSIDLVFRHNGKYYLVDYKSNFLGSTLADYNQEELKKEMLH 1144

Query: 899  -THIAQLSIYEKILKD 913
              +  Q  IY   L  
Sbjct: 1145 SHYDWQYLIYTLALHR 1160


>gi|160893318|ref|ZP_02074105.1| hypothetical protein CLOL250_00867 [Clostridium sp. L2-50]
 gi|156865010|gb|EDO58441.1| hypothetical protein CLOL250_00867 [Clostridium sp. L2-50]
          Length = 672

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 92/558 (16%), Positives = 176/558 (31%), Gaps = 118/558 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+E  + N  +DF+D+++ T +LL+     + IR    Q   +ILIDE QD + IQ+
Sbjct: 167 YREYDEILRANNKIDFDDMLVFTYELLRD---RSDIRKMWQQRFQYILIDEFQDINWIQY 223

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           + ++ L              + +FAVGD+ QS+Y F GA+ K +L               
Sbjct: 224 QTVKLLLG----------KKQNIFAVGDDDQSVYGFRGADTKLMLGFPNEFP-------- 265

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              ++ L  ++R ++ I+    ++    +     +        H +    Q   V + E 
Sbjct: 266 GTRLVYLNTNYRCSSAIVESACRIIKNNKERYKKAI-------HSAFEKSQCERVHVIEV 318

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              + ++                            I   I  M              I  
Sbjct: 319 DGMRQETDG--------------------------IVQKIRKMNQNG----------IPY 342

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQE 432
            +I VL R   +   +            I     D    L  H  + +++   +  L   
Sbjct: 343 SNIAVLYRTNSEPSGLAMKL----MQSNIPFRVKDSIPDLMSHFVVVNILDYIKAALGNR 398

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           +   F+ ++  P    S + +          +  Y    +     +         +   +
Sbjct: 399 ERALFLRIINRPNRYVSRESLETDPVDTERMKEFYRDNNRLVQNMV--------TLEADL 450

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ--NSYSSLQEL 550
                  P+     I  A     +++  + +       E+++     ++      S  E 
Sbjct: 451 RRIAELKPYAAVNYIRKAVGY-DEYLKEYASYRGINPQEYMDIADEFQEMARDADSFIEW 509

Query: 551 ISELEQYPP---TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            + L +Y        +      + V + T+H AKGLE   VF+++    +  H       
Sbjct: 510 FNFLNEYRIKLKEQMKTTDHTRDAVVLATMHGAKGLEFDQVFIMNAVEGMTPH------- 562

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                        K +  +  EE  R+ YV +TRA   L I   
Sbjct: 563 ----------------------------KKSVADAELEEERRMFYVAVTRARYGLYIYVP 594

Query: 668 SNTSNEKKSNQRTWYDMV 685
                +     R   +MV
Sbjct: 595 KVVYGKTARISRFVTEMV 612


>gi|188993814|ref|YP_001905824.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris str. B100]
 gi|167735574|emb|CAP53792.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
            campestris]
          Length = 1372

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 124/890 (13%), Positives = 248/890 (27%), Gaps = 110/890 (12%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
            L  +   + +       ++  +       L         + K++  V  ++DL+      
Sbjct: 372  LFDALAVWQQADAVVRQWEGQRRIRLLHALRDDAVLQLAQRKRQRRVQTYDDLVDGVARA 431

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN----------- 208
            L+     A ++ ++  +    L+DE QDT   QW++   +                    
Sbjct: 432  LQGPQAEALVQ-RLRAQYAIALVDEFQDTDDRQWQIFSRVFGPEHAASGEAFAPDDDADF 490

Query: 209  ----THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                    PR L  +GD KQ+IY F G + +  L      Q+             L  +F
Sbjct: 491  DNAAGAPPPRLLALIGDPKQAIYGFRGGDVQTYLAAATTAQRAPP----------LEHNF 540

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCN 323
            RS   +L  +D +++    A+    +       +  ++      ++      +    +  
Sbjct: 541  RSRPGVLAAIDALYAQAGYAEAFLTEGIAFHPVQPGTKRSDADLLRDGAAAPALTLWRAP 600

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVLVRK 382
                             +  +        I   +      S     R +QA DI VLVR 
Sbjct: 601  APPPPEKGKPKPWSAGRARELCTAACVAAIRGWLAGGRDGSASINGRPVQAGDIAVLVRS 660

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +   I      +     I  V   +  L       +L+AL + +L   DD      L 
Sbjct: 661  HGEATRIQQALGAV----GIPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALA 716

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            + L       I  +                       + +   +   +     Q   P  
Sbjct: 717  TVLIGEDAAAIAALEHD------------------GERHRRWQQQALDWRERWQRGGPLA 758

Query: 503  FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY------SSLQELISELEQ 556
                 LGA  G++      G   +    +        +  +         L   I+  + 
Sbjct: 759  LVGD-LGATHGQRLLALVDGERRLTNYLQLAELLQEADTRALGPHGLVDWLARRIANADD 817

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               T +    ++   V+I+T+H +KGLE P+VFL   G         +   +    +   
Sbjct: 818  NDETQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIGRADKSPGRHCVVHAPPHGRQ 877

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                    S       S      K   + E  RLLYVG+TRA   L I   +   +E+ +
Sbjct: 878  LHWNTSKWSADDTASWSTAETAWKHEQRAEDARLLYVGLTRAEHALWIATGAFHQHERTA 937

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK----- 731
                  D           V  +  T        +  + +   P     +R          
Sbjct: 938  LAPMLRDPAALQASAGAGVIALDDTAPPATLPRLPADDAVQVPAARLAQRHVVPDWWVYS 997

Query: 732  -QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
               +          +      +      P++        +E+          G+ +H + 
Sbjct: 998  FTQLANADAGSDPMASATLASSGGSDEPPASEPVSAPAEVEAFDPRFAGNRFGVAMHDVF 1057

Query: 791  QVIFTLP--------EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------ 836
            +                                +   E  + L  +TRL+ + +      
Sbjct: 1058 ERCDFAAWRNWCPGQPAPEGQAAAILEALQRGGYAQDELDDGLAMLTRLVGHTLTVTLPE 1117

Query: 837  ---MTTAMSCDSYSEVSVSGKINCPKKDIII-------------------------SGRI 868
               +         +E+     +   + D ++                         +G I
Sbjct: 1118 GTCLAAVPEPQRRNEMEFHFAMRPTRVDALLALLHRFGVVTERQAFGARQRLEGLMTGLI 1177

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
            D    +    ++ +YK++     + + +        +  Q  IY   L  
Sbjct: 1178 DLTYCADGRWYVLDYKSNRLPAYDPDALARAMAHSEYELQALIYTIALHR 1227


>gi|108797875|ref|YP_638072.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium sp.
            MCS]
 gi|119866969|ref|YP_936921.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium sp.
            KMS]
 gi|108768294|gb|ABG07016.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium sp.
            MCS]
 gi|119693058|gb|ABL90131.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium sp.
            KMS]
          Length = 1115

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 140/1021 (13%), Positives = 275/1021 (26%), Gaps = 168/1021 (16%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            +  N+  E +        + +   +   ++        T  +  Q + ++       +  
Sbjct: 94   VGDNQLVEHLIDAPDDERHLRKQRLKDALAGFDAATIATTHQFCQLVLKSLGVAGDTDTG 153

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLK----EKLKKSQDEFIKIRDRFNTYKMFKS 122
              L             ++      ++  D      + L+ +++                 
Sbjct: 154  VQLVESLDDLTAEIVDDLYLAHFGQQRDDPVMTRGQALELAREVVGNAGTELRPQNPPPE 213

Query: 123  TLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            T A+     AK + A  E  K++  +L ++DL+    + L   D  A  R ++ +  + +
Sbjct: 214  TEAAARVEFAKAVCAELERRKRRLGILHYDDLLSRLANALTGEDSPA--RTRMHRRWSIV 271

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT  +QW+V+              +   TL  +GD KQ+IY+F G +    L  
Sbjct: 272  MVDEFQDTDPVQWQVLDR----------AFTGRSTLILIGDPKQAIYAFRGGDIATYL-- 319

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                      A        L  ++RS  D++  +  V    E             RH+  
Sbjct: 320  --------HAASTAGHRQTLGTNWRSDGDLVDRLQVVLRDAELGDPEIVVRPVEARHKGH 371

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            R    G        +          +   T   D L    SA + A      I  ++ + 
Sbjct: 372  R--LAGAPHNDPFRLRIVSRDTFGIRGDRTIPIDRLRPHISADLAAD-----IGRLLASG 424

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
              F + K   I+AKDI V+V K KD            +   I  V      + +  A  D
Sbjct: 425  ATFCDKK---IEAKDIAVIVEKHKDARACFDAL----SVAGIPAVYTGDSDVFNSPAGDD 477

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
             + L                  +  F  + +++     +  +                  
Sbjct: 478  WLCLLEAFDQPHRSGLVRAAATTMFFGRTAEELAARGDRLTD------------------ 519

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
               +   + E    A+       F        GR+    R G   +  L           
Sbjct: 520  --EIADRLREWADHARERGVAAIFEAANMTGMGRRVLSWRDGERHMTDLAHLTQVLHETA 577

Query: 541  QNSYSSLQELISELEQYPPTI------KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               + +L  L   L              R    +   V+IMTV  +KGL+ PVV+L    
Sbjct: 578  HREHFNLPALRDWLRTQREERSGATERNRRLDNDAAAVQIMTVWVSKGLQYPVVYLPFA- 636

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                     + +     +         +      +   + + +  +K    +  RL YV 
Sbjct: 637  -------FNRNIQTRDCVLFHDDRTRCLHIGGDDSPDHAQVERLGRKEAAGDDIRLTYVA 689

Query: 655  MTRASDQLIICKH---------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +TRA  Q++                        E     R     + D+           
Sbjct: 690  LTRAQSQVVAWWAPSWDEPNGGLSRLLRGRAPGETTVPDRCDPPKLDDADARTALRAWAD 749

Query: 700  LTNSINKDEWIAYEWS---THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI----- 751
            L   + +D  IA   +     HP +  +            +     L    +        
Sbjct: 750  LGGPVLEDSEIAAPAAPELREHPTDLDVRHFHRGIDTAWRRTSYSGLLRAAEGSPAVAGV 809

Query: 752  ----------NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                      +E   +  S   T        +         G ++H +L+         +
Sbjct: 810  TSEPEVGELDDEAAEVPVSESHTDVDPVPSPMAELPTGAKFGSLVHAVLEHADPFAADLK 869

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSG 853
                              E + L  ++  + + P+        +      D   E+    
Sbjct: 870  AELEHRIREHMVWWPVDVEAEALADALLPMHDTPLGPLAPNVTLRQIGPRDRLRELDFEF 929

Query: 854  KINCPKK-------------------------------------------DIIISGRIDQ 870
             +                                                   ++G ID 
Sbjct: 930  PLAGGDVRGGAPAITLADVGRLLGAHLPADDPMTPYVDRLTDRALGGQSLKGYLTGSIDV 989

Query: 871  ISISQQ----NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +   +        + ++KT+    +E       +              + +  L  LL  
Sbjct: 990  VLRVRDTTGVRYVVADWKTNWLGEREKPLTAADYSR----TRMAEAMLHSDYPLQALLYC 1045

Query: 927  V 927
            V
Sbjct: 1046 V 1046


>gi|285019926|ref|YP_003377637.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
 gi|283475144|emb|CBA17643.1| probable atp-dependent dna helicase protein [Xanthomonas
           albilineans]
          Length = 658

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 105/720 (14%), Positives = 229/720 (31%), Gaps = 140/720 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  E  E + K +          I  + +L ++     I   A  L++       ++  +
Sbjct: 60  SAKEMRERVAKRIRNEAA-DGLTICTFHALGLK--FLQIEHAAVGLKRGFSIFDADDAAA 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +            K+++         D+K  + ++++  +         +  +      
Sbjct: 117 QI------------KDLMPGAKPDAVDDVKNLISRAKNAGLSPEQAMAAARSNREQD--- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A  L A Y+        +DF+DLI     +L+  +    I     + I ++L+DE QD
Sbjct: 162 --AASLYARYQARLSTFNAVDFDDLIRLPVQVLESNED---IVMAWRERIGYLLVDESQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L                   VGD+ QSIY++ GA P+ +++  R     
Sbjct: 217 TNDAQYRLLKMLAG----------PRGNFTCVGDDDQSIYAWRGANPENLMQMGRDYPT- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II+L  ++R +  +L   + + +   +    +  S                
Sbjct: 266 -------LQIIKLEQNYRCSNRVLRAANALIAHNPHEHLKTLWSDQ---------ADGER 309

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           +++W                          +   +   A ++A  I+ +         G 
Sbjct: 310 IRVW--------------------------ECRDSDHEAEKVAAEIAYL---------GT 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + +   D  +L R    +  +    +       +           +   +KD++A  R 
Sbjct: 335 AKQVPWSDFCILFRGNFQSRPLEKALQM----AAVPYHITGGTAFLERQEVKDVLAWLRL 390

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISK 480
           +++ +DD +F+  +++P        + K+                    +Q+      + 
Sbjct: 391 LVNPDDDAAFLRAVQAPKREVGATSLAKLAELAAAKHLPMSRAAASVGALQQLPPRAANG 450

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFTLR 538
               +  +HEL   +   S  D    +       ++  ++  +E                
Sbjct: 451 LSDFVDILHELRAASATVSSADVVRQLAEQSGLIRELRNQCKDEASFQRRRGNLEELAKW 510

Query: 539 NEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            E     +S+ +L ++L       +       N+VR+MT+H +KGLE   VF+V     V
Sbjct: 511 FESGPRGASVGDLAAQLALLS---RNDKDDGGNQVRMMTMHASKGLEFRYVFIVGCEDGV 567

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H+                                      ++   +E  RLLYVG+TR
Sbjct: 568 LPHEVSL-----------------------------------EEGNLQEERRLLYVGITR 592

Query: 658 ASDQLIICKH---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           A +QL +             +     ++D +       +    +       +        
Sbjct: 593 AKEQLWMSYSMLTRKFGEHIRLKPSRFFDEIPAEEMQRDGADPVADAARKKERANAGLAA 652


>gi|293390017|ref|ZP_06634351.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter
            actinomycetemcomitans D7S-1]
 gi|290950551|gb|EFE00670.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter
            actinomycetemcomitans D7S-1]
          Length = 1234

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 145/957 (15%), Positives = 286/957 (29%), Gaps = 159/957 (16%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNII----TQEINKKSPDLKEKLKKSQDEFIK 109
            +++  +    +  +++ ++  + K            T    +K  + K+ L       I 
Sbjct: 289  RRSFTSTTRPKWLAMMKAWAESDKADFPDCFSRFGQTAMNEQKGEEAKDALTHLLFVEID 348

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
               +    +   S        + LNA   E K  +    F DL+    + L   D + + 
Sbjct: 349  ELLQLAEQQALLSQALWFHYLQMLNAQLVEYKLNHSEKSFNDLLRLLKEALYHPDNTEFA 408

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
            R  I  +    +IDE QDT  +Q+++   +  +         S      +GD KQ+IY F
Sbjct: 409  RL-IRYQFPFAMIDEFQDTDAVQYQIFSKIYVEQPQTDAQSDSG--FIMIGDPKQAIYKF 465

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA+     +  R  Q R            L  ++RS  +++  V+++F   E    L +
Sbjct: 466  RGADIFTYFQAARQAQHRFN----------LTKNYRSHQNVVDCVNRLFDFREQPPFLYK 515

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            D         +R                   Q  P    +      + + S    +A+  
Sbjct: 516  DIQ--FMSVGARTDHP---------QFWLSGQPEPAVRFY------VDEASVKENMAKAC 558

Query: 350  AYTISNMIGTD------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
            A +I + + +           +G ++ ++ + I VLVR RK+  L+    R L      S
Sbjct: 559  AISIQHWLQSAVENSAVFRLDDGDEKTLKPESIAVLVRSRKEAELVKNELRHLGIA---S 615

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
            V  ++   + D  A KDL+ +    L+   +   +  + + +F  +  DI +I       
Sbjct: 616  VYLSEDSNVFDSSAAKDLLMILTACLNPFSERHILNAIATAIFAQTSADIQRIRMDETRW 675

Query: 464  ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
            E   E    +        Q V+  +H+L          +  T  L      ++ ++    
Sbjct: 676  EHWVEKFIHYQRTWQK--QGVLVMLHQLFQQ-------EKITEKLYPTVDGKRLVTDLL- 725

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAK 581
                 L E L       ++  + L+    ++  E      +    +    V+I+T+H +K
Sbjct: 726  ----HLAELLQEAATLNESEAALLRWFEKQIQGENRQKEQQIRLESELQLVKIVTIHKSK 781

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE  +V+L   G         +   I    ++  G  +W                 +++
Sbjct: 782  GLEYDLVWLPFIGYA----STFRGDRIATYYDEAQGAVLWDYDKSHE--------ALVQQ 829

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TRA  QL+I        +  S                +      L 
Sbjct: 830  EDFAEQLRLLYVALTRAKYQLVIGVPQTFEQKWSSLLYVLTQGEIPINEKPKAYDSRPLL 889

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQL---------------------MDEQKIP 740
              + +          +  +  PL  +   +                          + I 
Sbjct: 890  EKLAERALQGSVQIANTADLIPLPLQAHAEAQIPLHAAKFTGNIEQNWTVTSFSAMEAIH 949

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLE-----------------------SLLSDN 777
            +         + E  +  PS  D     +                         S     
Sbjct: 950  QNKAYFKAQQMAESAVDFPSVFDLGKDYDFNEQGQSTESIQETETDESVYPFGYSPFDFP 1009

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-- 835
               N G  +H+ L+          ++ I   C             +L   I  +L  P  
Sbjct: 1010 HGINIGTALHRFLEK-TDFDRPLNEDKIQKLC--QWLQLEETWLPSLQQWINAILHTPLS 1066

Query: 836  ------MMTTAMSCDSYSEVSV------------------------SGKINCPKKDIIIS 865
                   +          E+                          S  +       ++ 
Sbjct: 1067 TQDPTLQLVNLNCQHCVKEMQFYLKLNQTFDVAAFNQALQQHHHLPSEPLQFEAIKGMLR 1126

Query: 866  GRIDQISISQQNIFIFEYKTHHH---------VPQEIEHIPYTHIAQLSIYEKILKD 913
            G +D +       ++ +YK++              +   +   +  Q   Y   L  
Sbjct: 1127 GFMDLVFYHNGKYYLADYKSNFLGVEAQNYVGTSLQQAMLTNHYDWQYLFYTLALHR 1183


>gi|329123403|ref|ZP_08251967.1| exodeoxyribonuclease V beta subunit [Haemophilus aegyptius ATCC
            11116]
 gi|327470985|gb|EGF16440.1| exodeoxyribonuclease V beta subunit [Haemophilus aegyptius ATCC
            11116]
          Length = 1211

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 149/987 (15%), Positives = 305/987 (30%), Gaps = 158/987 (16%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248  ESADEISAIITNELEKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
             +FL           T +   K P                 ++     M    L+ LTL 
Sbjct: 308  DYFLQSSIEKNCEESTDKNKDKKPA-----TPFYSPIFAELEKRVNALMTPDLLSKLTLY 362

Query: 131  KYLNAHYEEAKKKNCVLD---------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                 HY +  ++  +LD         F+DL+    + L+       +   I  +    +
Sbjct: 363  -----HYRQGLQQK-LLDYKLNHQEKSFDDLLRLFCEALQG-AQGDELAEMIRFQYPFAM 415

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   Q+ +   +  D                +GD KQ+IY F GA+    L+  
Sbjct: 416  IDEFQDTDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKAS 469

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               Q R            L  ++RS   ++  V+ +F  P++       + T +  R   
Sbjct: 470  DEAQSRFE----------LTKNYRSEKHLVDGVNALFDFPQSPFIYQNINFTAVDSR--- 516

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                      + +    + +  P    + +  D + +   A I A  I + + +      
Sbjct: 517  ---------DDHLRFYLNGKAEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAAENQA 567

Query: 362  IF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +F +    + +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+
Sbjct: 568  VFQNEDTCKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKE 624

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L  + +  L+   +   +  + + LF  +  DI +I           E   +      ++
Sbjct: 625  LAWVLKACLNVA-ERPILNAIATALFGLNAADIHQIQQN--------EADWQRWADSFAQ 675

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +Q   +    L  + Q          +L    G +             L E L       
Sbjct: 676  YQQTWQRQGILAMLHQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATIH 729

Query: 541  QNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++  + L     +++ +     +    +    V+I+T+H +KGLE  +V+L         
Sbjct: 730  ESEAALLSWFEKQIQGEGRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLA-APSK 788

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                K ++I  S   D  +     ++          +  L + T  E  RL YV +TRA 
Sbjct: 789  DPSKKDINIYYSKERDETLWDIENRN----------LNALCEETFAEELRLFYVALTRAK 838

Query: 660  DQL----------------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             Q+                 +        E   +     + +  +F    R      T  
Sbjct: 839  YQMAFALPAQFDKKWNALHYVLSQGEIGKEINLSDSKDTETLLQAFKEKMRDNVEICTKP 898

Query: 704  INK-----------DEWIAYEWSTHHPEN------TPLEREETIKQLMDEQKIPKKLFSP 746
              +           D++ A E++ +  ++      T +E+    +    E    K     
Sbjct: 899  NLEALPTLSINTKNDDFKAAEFTGNIEQDWRITSFTSIEQAHRRQNYFTESAGKKHAVFD 958

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
               D +    +  ST+      +  S+L   +    G  +H+  +  +       +    
Sbjct: 959  DAKDYDSQNSIEMSTV--LLNESESSILDLPRGKQVGTALHRHFENCYFSDLANIEEIDK 1016

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSV-------- 851
                + +        ++L   + ++   P+       +    + D   E+          
Sbjct: 1017 ---LRQSLQLDETFTESLQNWLQQISHTPLSNEIGIALADLANKDCIKEMPFYLAIREHF 1073

Query: 852  ----------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---- 891
                            S  +   +   ++ G ID +       ++ +YK++         
Sbjct: 1074 DVEAFNHTLKVHHHLPSEPLQFEQIQGMVRGSIDLVFRHNGKYYLVDYKSNFLGSTLADY 1133

Query: 892  -----EIEHIPYTHIAQLSIYEKILKD 913
                 + E +   +  Q  IY   L  
Sbjct: 1134 NQEALKKEMLHSHYDWQYLIYTLALNR 1160


>gi|88860009|ref|ZP_01134648.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Pseudoalteromonas tunicata
            D2]
 gi|88818003|gb|EAR27819.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Pseudoalteromonas tunicata
            D2]
          Length = 1183

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 132/966 (13%), Positives = 281/966 (29%), Gaps = 142/966 (14%)

Query: 23   LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                  SD+ K    +       +L   Q+ Q   +    ++ F + ++           
Sbjct: 237  AAAILNSDLKKTKPAAKAPNLELLLAFCQSEQTVFEFGSDKKSFEIWAADNFLDP----- 291

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             +  +     S  L +   +  +   K+          ++T       K+++A     K+
Sbjct: 292  EMYKKGGKTFSHPLCQVFTELSELQQKLTFGMPIAIAQQAT-------KWVSAALSTKKQ 344

Query: 143  KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +  ++  +DL+   +  L   D    +  +I  +    +IDE QDT  IQ+ +   +   
Sbjct: 345  EQRLISPDDLLTQLHHALF-SDGGDTLASQIAADFPVAMIDEFQDTDPIQYGIFSQIF-- 401

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   +        +GD KQ+IY F GA+    +  K                  L  
Sbjct: 402  -------NRESCAFTMIGDPKQAIYGFRGADIFTYINAKHQVSTE--------QQYTLGK 446

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            ++RS+  I+  V+ +F+  +N+   ++D             +       + +     +  
Sbjct: 447  NWRSSTGIVNSVNALFNHHDNSFIFNQD-------IPFLAVEAQGKTAEQALYLDGKAVT 499

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-FSNGKKRVIQAKDILVLVR 381
              +            +  +   LA   +  I+ ++       +      +QA DI VLVR
Sbjct: 500  AFEFCVLEHDAPVTSKAYAMPRLAAHFSDKIATLLQQAQAGRATIGSHAVQAADICVLVR 559

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             R +   I        +   I+ V   R  +        L+     +  Q D+ ++  +L
Sbjct: 560  DRNEASFIKEAL----SKQGIASVYLSRDGVLQSPLALHLLNFLTALHGQYDESAYRGVL 615

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
              PLFN +   I+++       +       + ++    K    +  +  L+         
Sbjct: 616  AGPLFNLNYQQIYQLAENEQTWQQYLALFSELSDIWYKK--GAMAMLELLLMRNNLAGLW 673

Query: 502  DF----FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                      L   +   + + +   E+   L           QN           ++  
Sbjct: 674  QAMGLPVERWLTDFRHLAEILQQKQLELEGSLR----LVRWFAQNI----------IDTS 719

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
              + +    ++   V+I+T+H +KGLE P+VF+        + +          +    G
Sbjct: 720  KESAQLRLESDAKLVKIVTMHASKGLEYPLVFMPFAVGFREASEQ---------IYHQDG 770

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
              ++               +  +K    E  RLLYV +TR   Q  I  ++      KS 
Sbjct: 771  ELVYNLIKDD------ASQQLAEKERLAEDLRLLYVALTRPVHQCFIGMYNIAVGNSKSM 824

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  + +  F              +N                    +     +L    
Sbjct: 825  TIQRTALGHLLFAGQTLTSATDWHQLLNAFAAAHSADMAVSYFAETDSKISLSDELTVPN 884

Query: 738  KIPKKLFSPIKNDINEPY--ILNPSTIDTKGKTNLESL-----------------LSDNQ 778
               K     I+ +        L+ +          E                    S  +
Sbjct: 885  YERKLFTGKIERNWRLTSFSALSYNQASEHITPGFEDESHELDWLGEEQSNELNQFSFPR 944

Query: 779  TFNRGLIIHKLLQVI----FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS--ITRLL 832
                G  +H + + I               + +   +  + +  + +  L+    I R+L
Sbjct: 945  GARAGSCLHAIFEEIDFQHPDTHPSDPSKNLGAVVEQQLQKYSIEPHWQLVAEQWIKRVL 1004

Query: 833  ENPM------MTTAMSCDSYSEVSVSGKINCPKKDII----------------------- 863
              P+      +    +     E+             I                       
Sbjct: 1005 STPLDADGLSLNKLGAQQCLIEMEFYLPFERLDATGINQVLDSVASESVFKHNLKFETIQ 1064

Query: 864  --ISGRIDQISISQQNIFIFEYKTHHHVP-------QEIEHIPY--THIAQLSIYEKILK 912
              + G ID I   Q   ++ +YK++H            +E +     +  Q  +Y   L 
Sbjct: 1065 GMLKGFIDLIFEWQGKYYVLDYKSNHLGELASDYQQSNMEEVMQSHHYHLQYLLYSVALH 1124

Query: 913  DSYPNK 918
                 +
Sbjct: 1125 RLLKTR 1130


>gi|298488371|ref|ZP_07006402.1| Exodeoxyribonuclease V beta chain [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298156996|gb|EFH98085.1| Exodeoxyribonuclease V beta chain [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 1230

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 124/1004 (12%), Positives = 276/1004 (27%), Gaps = 157/1004 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + L   +     E          LT +   +        +           ++  +    
Sbjct: 272  EKLAAWAADDTQETLDLGTGFTRLTPEGVAEAWKSDPPSHPAF--------EAMAQLKAA 323

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             D                 A++++A +EE +++   + F+D+++  +  L        + 
Sbjct: 324  LDSLPKPDAA----VLQHAAQWVSARFEEERRRRAEMGFDDMLLRLDAAL-HGAGGERLA 378

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379  TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEANDEQTGLFLIGDPKQAIYAFR 433

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR ++                 L  ++RS+  ++  V+ VF+  E        
Sbjct: 434  GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQGRGA 484

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    +         Q  ++ +    +               +        LA   A
Sbjct: 485  FLFRDDQGNQVPFSDALAQGRKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLAASCA 544

Query: 351  YTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              I  ++             +   R ++  DI +LVR  K+   +             SV
Sbjct: 545  SEIVRLLNAGQQGRAGFAMLDKPLRGLRPADIAILVRDGKEAQAVRQQLSA---RGVRSV 601

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
              +D+  +       DL++  +     + + +    L     +    ++ ++        
Sbjct: 602  YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E   +        ++ V +    L  + +          ++    G +   +     
Sbjct: 657  ---ELAWERRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNLL--- 710

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
                L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711  ---HLSELLQQAAAELDGEQALVRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ P+VFL    S          +    +  +                    LI+    
Sbjct: 768  GLQYPLVFLPFICSSKPVDGSRLPLQFHDADGNSQISLQPT----------EALIQQADD 817

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RLLYV +TR+     +   ++      SN       +         + +    
Sbjct: 818  ERLAEDLRLLYVALTRSEHACWL-GVADLKRGNASNSMLHRSALGYLLGGGVALAESVEL 876

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKNDI- 751
                +D     +     P   P +   +  +             +       +       
Sbjct: 877  KVWLRDLAQGCDAIALQPVPEPTDERFSAPRNEAALVQLLVPKRRAAENWWIASYSALRI 936

Query: 752  -------NEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV 792
                    +    +P          L+                  +  N G  +H LL+ 
Sbjct: 937  GDTVTTGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEW 996

Query: 793  -------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMT 838
                   +        ++ +   C++           + L  +  + L          + 
Sbjct: 997  AGNEGFALTAHTPELLRDAVARRCSRRGWAGWIDTLSDWLQQMLNIPLRLSPDATPVALG 1056

Query: 839  TAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRIDQIS 872
                 + Y  E+     S  +N  + D ++                       G ID   
Sbjct: 1057 ELNQPNQYRIEMEFWFASNNVNVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFIDLTF 1116

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS--------- 914
              +   ++ +YK++     +  +         +   +  Q  +Y   L            
Sbjct: 1117 EHEGRYYVADYKSNWLGTDDTAYTELAMETAILDNRYDLQYVLYLLALHRQLKARMADYD 1176

Query: 915  YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
            Y       L +++           F  P  +L ++   +    P
Sbjct: 1177 YDQHMGGALYLFLRGSRSASQGAYFTRPPRELIESLDLLFQGKP 1220


>gi|170696477|ref|ZP_02887603.1| exodeoxyribonuclease V, beta subunit [Burkholderia graminis C4D1M]
 gi|170138630|gb|EDT06832.1| exodeoxyribonuclease V, beta subunit [Burkholderia graminis C4D1M]
          Length = 1233

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 132/997 (13%), Positives = 279/997 (27%), Gaps = 139/997 (13%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK---KAQTLQQASQTQCIEE 64
              +   +  +     L + +   I   ++ + +  + T  K    +  +   ++     +
Sbjct: 224  DASADPQAGFDAACELWHAERDAIVSLLAEAQDRLSKTTHKPDHVSAAIAAWTEYFAQGD 283

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
              +      L    +  K     + +       E  +      +          +     
Sbjct: 284  CHAPPPRTALKLTASALKKATKVKFDPPQHAFFEHAEALAAAVVATEAAQRARWLAIVQT 343

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                    L A     K+   V+ F+DL+ N    L       W+   +       LIDE
Sbjct: 344  WLDHAPAELVAR----KRTRRVVSFDDLLSNLYRALAAHP---WLADALRARYPAALIDE 396

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT  +Q+ +   +                LF VGD KQ+IYSF  A+           
Sbjct: 397  FQDTDPLQFAIFSRIFA----------PAGPLFLVGDPKQAIYSFRAAD----------L 436

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                       +   L ++ RSTA I+   ++VF     A  L       +R    R   
Sbjct: 437  HTYLAARASASARYTLAVNQRSTAPIVDACNRVFEANPQAFVLEGLDYQPVRAGERRR-- 494

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-F 363
                           S  +    +      +L +  +    +   A  I  ++       
Sbjct: 495  -------PPFSDPDSSGGDFCIWTLPPGEQALTKREAQREASEACAAEIVRLLRGAREGT 547

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +   +I VLV+  K   LI  +       + +  V   +  +   L  + +  
Sbjct: 548  VTIGDAPLAPGNIAVLVQTHKQGSLIKRVLAA----WGVGSVELAQASVFATLDAEQIER 603

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            +   + +  D       L +         ++++           +        G      
Sbjct: 604  VLAAVDTPGDLRRLRAALATDWLGLDAAALWRLEQVADAPAVADDPAHAADAMGW----- 658

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRN 539
             ++       +         +  ++   +  Q+ ++    E      + L E +      
Sbjct: 659  -VERFSRYRMLWHERGFAVMWRTLMRELRVAQRLVAAPDGERRLTNVNHLAELVQARAAT 717

Query: 540  EQNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +     +L+ L ++  Q      +    ++ N V+I+TVH +KGLE  VVF         
Sbjct: 718  QPGIAPTLRWLAAQRAQGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGL 777

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                   +      +D  G  +        +       +H  +    E  RL+YV +TRA
Sbjct: 778  REPPSSGLPDAREYHDPGGDAVLHYGC--DDEEAERAARHAAREQAAERARLVYVALTRA 835

Query: 659  SDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
              +  +    + ++ + K+S +     +V  S +  +         +     W A     
Sbjct: 836  VYRCYLVAGTYLSSRSTKESRRSVLNWLVAGSGYEFDDWLADPPDEAALSARWQALAGGP 895

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL--- 773
               +  P        + M E    K+  S  ++  ++  + + S +   G    E+    
Sbjct: 896  IALQPLPKVERRRPLESMQESGAHKRARSHRRSLRDQWRMASFSGLIAAGDKAEEAQAPL 955

Query: 774  -------------------------------------LSDNQTFNRGLIIHKLLQVIFTL 796
                                                 L+  +    G  +H++ ++    
Sbjct: 956  EEVRPDHDEIADVLAAAPTLLAPAPALQVSSLAADDILAFPRGAAAGECLHRMFELADFG 1015

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYS 847
                  + I     +            L   + +LLE+           +         +
Sbjct: 1016 DPRTWPHAIRGALRERPAPASPDLAPRLPAMMHKLLEDVVSTELVPGMTLAQLDPRRRLN 1075

Query: 848  EVSV----------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
            E+                           +        + G ID I       +I ++K+
Sbjct: 1076 ELEFLFAAPSLDFAALRALLIEHGYPDVALEPGALRGFVKGFIDMIVEHDGRFWIVDWKS 1135

Query: 886  HHH---------VPQEIEHIPYTHIAQLSIYEKILKD 913
            +H          VP E     + +  Q  +Y   L  
Sbjct: 1136 NHLGETAEDYSAVPLEAAMASHAYHLQALLYTVALHR 1172


>gi|145630792|ref|ZP_01786570.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021]
 gi|144983674|gb|EDJ91134.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021]
          Length = 1211

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 140/976 (14%), Positives = 291/976 (29%), Gaps = 136/976 (13%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248  ESADEISAIITNELVKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71   SFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             +FL         +     ++    +P       + +     +       K+        
Sbjct: 308  DYFLQSSIEKNCEESTDKNKDKKTATPFYSPIFAELEKRVNALMTPDLLSKL-----TLY 362

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               + L     + K  +    F+DL+    + L+       +   I  +    +IDE QD
Sbjct: 363  HYRQGLQQKLLDYKLNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAMIDEFQD 421

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T   Q+ +   +  D                +GD KQ+IY F GA+    L+     Q R
Sbjct: 422  TDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSR 475

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                        L  ++RS   ++  V+ +F  P+        + T +  R         
Sbjct: 476  FE----------LTKNYRSEKHLVDGVNALFDFPQLPFIYQNINFTAVDSR--------- 516

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-SNG 366
                + +    + +  P    + +  D + +   A I A  I + + + +    +F +  
Sbjct: 517  ---DDHLRFYLNGKAEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAVENQAVFQNED 573

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              + +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+L  + +
Sbjct: 574  TCKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKELAWVLK 630

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
              L+   +   +  + + LF  +  DI +I           E   +      +++Q   +
Sbjct: 631  ACLNVA-ERPILNAIATALFGLNAADIHQIQQN--------EADWQRWADSFAQYQQTWQ 681

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                L  + Q          +L    G +             L E L       ++  + 
Sbjct: 682  RQGILAMLHQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATLHESEAAL 735

Query: 547  LQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L     +++ +     +    +    V+I+T+H +KGLE  +V+L             K 
Sbjct: 736  LSWFEKQIQGEGRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLA-APSKDPSKKD 794

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662
            ++I  S   D  +     ++          +  L + T  E  RLLYV +TRA  Q+   
Sbjct: 795  INIYYSKERDETLWDIENRN----------LNALCEETFAEELRLLYVALTRAKYQMAFA 844

Query: 663  -------------IICKHSNTSNEKKSNQRTWYDMVY-------------DSFHNDERVK 696
                          +        E   +     + +               +  N E + 
Sbjct: 845  LPAQFDKKWNALHYVLSQGEIGKEINLSDSKDTETLLQTFKEKMRDNVEICTKPNLEALP 904

Query: 697  KIKLTNSINKDEWIAYEWS-THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             + +    +  +   +  +       T     E   +  +           + +D  +  
Sbjct: 905  TLSINTKNDDFKAAEFTGNIEQDWRITSFTSIEQAHRRQNYFTESAGKKHAVFDDAKDYD 964

Query: 756  ILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
              N   I T      ES  L   +    G  +H+  +  +       +       +    
Sbjct: 965  SQNAIEISTALLNENESNILDLPRGKQVGTALHRHFENCYFSDLANTEEIEKLRQSLQLD 1024

Query: 815  LWPAKEYKNLLLSITRL-LENP---MMTTAMSCDSYSEVSV------------------- 851
                +  +N L  I+   L +     +    + D   E+                     
Sbjct: 1025 ETFTEPLQNWLQQISHTPLSHEIGIALADLANKDCIKEMPFYLAIREHFDVEAFNHTLKA 1084

Query: 852  -----SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHIPY---- 898
                 S  +   +   ++ G ID +       ++ +YK++           E +      
Sbjct: 1085 HHHLPSESLQFEQIQGMVRGSIDLVFRHNGKYYLVDYKSNFLGSILADYNQEALKKEMLH 1144

Query: 899  -THIAQLSIYEKILKD 913
              +  Q  IY   L  
Sbjct: 1145 SHYDWQYLIYTLALHR 1160


>gi|76802569|ref|YP_327577.1| ATP-dependent helicase [Natronomonas pharaonis DSM 2160]
 gi|76558434|emb|CAI50025.1| probable ATP-dependent helicase [Natronomonas pharaonis DSM 2160]
          Length = 960

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 124/864 (14%), Positives = 259/864 (29%), Gaps = 165/864 (19%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            ++ +   T    +           +   Y +       L+F  L +    LL +     
Sbjct: 242 KQLDETVATNVFHEDRDRLKAFVHDVYFEYLQFALDRNYLNFGFLQLFAFVLLCENP--- 298

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             R +      ++++DE QDTS IQ+++   L+                  VGD KQSIY
Sbjct: 299 --RIREQARFEYVMVDEFQDTSEIQFKLALLLSG-----------TNNFCVVGDWKQSIY 345

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQ----------KFSIIELPLSFRSTADILTVVDKV 277
           +F  A+ + +L  +      + +               + IEL  ++RST  ++ + +  
Sbjct: 346 AFQYADVQNILEFEDRLDTFSADLNSDSQRVSFETDDLTRIELEENYRSTETVIDLSEDA 405

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
              P  +                                        +  S  ++ +++ 
Sbjct: 406 IVTPATSGE----------------------------DVDTTLDDVVELSSNAAFDNTVI 437

Query: 338 QESSASILARRIAYTISNMIGTD---TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           +          +   I +++G D       +G+ RV + +D+ V  R R     +  +  
Sbjct: 438 EGIQHEDEHEALLSKIQDIVGNDDYAVEDEDGEPRVPEYRDVAVFTRTRDYGRELLDI-- 495

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
              ++Y   +  +    L      K L+A  R + S  D       +      ++ D+I 
Sbjct: 496 --ADEYDFPMAYDGGSELFRTDPAKLLLAWLRILESDADRGW---AVVLERAGYTLDEID 550

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
            I                      ++       +  L       S       I       
Sbjct: 551 HILE---------------TETYPTELATFRDELRGL------ESVGAVARRIFDRYG-- 587

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
                 F  +  D L   +     +   +   + + I    +   ++    SA+ N V +
Sbjct: 588 ------FHGDTADALLHTIQSVYDSTTLTRGEVIQFIERGIENGTSVDIHASASDNSVTV 641

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            T+H AKGLE P+V + +  S  F  +      I               + ++  ++  +
Sbjct: 642 QTIHAAKGLEYPIVIMANMNSGSFPPRSGGSGIIQYQDPIGLRQRKVYSEERTYPHVYDN 701

Query: 635 LIKHLKK----STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
               + +       +E  RLLYV +TRA   ++                           
Sbjct: 702 WRSDVLRRCLPREYDEERRLLYVAITRAEQHVLFAG------------------------ 737

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                      +     E +  E +       P++ E+ ++  +          SPI + 
Sbjct: 738 ---------GEDLNTFLEELPVEINEPDVSIDPVDHEKHVEAELPFA--VAAPESPIGHS 786

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
            +            +          + +  + G  +H   +      +    N       
Sbjct: 787 PHSLMDETVFEETGEQMELGPDEEPETRGMDFGARVHDFAEAYALGEDVTASNEHERRAA 846

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
           +                                  Y E  V+  +      + ISG +D 
Sbjct: 847 ELIDGLSG-------------------------RLYVEEPVTLPLEVDGYRVTISGIVDL 881

Query: 871 ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
           +  +   I I +YKT      + E     +  Q+S+Y  +L + +  K++   L Y S+ 
Sbjct: 882 VHETDDTIEIIDYKTDSTRRAQPE-----YRKQVSVYYHVLSEWFREKTITASLFYTSDG 936

Query: 931 ---KVFIIPQNKLNKAFAEISTKI 951
              ++  +  ++L+      ST+I
Sbjct: 937 VRERIDPLSLDELHDVIRRHSTEI 960


>gi|309973157|gb|ADO96358.1| Exodeoxyribonuclease V, beta subunit [Haemophilus influenzae R2846]
          Length = 1211

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 152/982 (15%), Positives = 299/982 (30%), Gaps = 148/982 (15%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248  ESADEILAIITNELEKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
             +FL           T +   K P                 ++     M    L+ LTL 
Sbjct: 308  DYFLQSSIEKNCEESTDKNKDKKPA-----TPFYSPIFAELEKRVNALMTPDLLSKLTLY 362

Query: 131  KYLNAHYEEAKKKNCVLD---------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                 HY +  ++  +LD         F+DL+    + L+       +   I  +    +
Sbjct: 363  -----HYRQGLQQK-LLDYKLNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAM 415

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   Q+ +   +  D                +GD KQ+IY F GA+    L+  
Sbjct: 416  IDEFQDTDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKAS 469

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               Q R            L  ++RS   ++  V+ +F  P++         T +  R   
Sbjct: 470  DEAQSRFE----------LTKNYRSEKHLVDGVNALFDFPQSPFIYQNIKFTAVDSR--- 516

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                      + +    + +  P    + +  D + +   A I A  I + + +      
Sbjct: 517  ---------DDHLRFYLNGKAEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAAENQA 567

Query: 362  IFSNGKKRV-IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +F N   R  +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+
Sbjct: 568  VFQNEDTRKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKE 624

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L  + +  L+   +   +  + + LF  +  DI +I           E   +      ++
Sbjct: 625  LAWVLKACLNVA-ERPILNAIATALFGLNAADIHQIQQN--------EADWQRWADSFAQ 675

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +Q   +    L  + Q          +L    G +             L E L       
Sbjct: 676  YQQTWQRQGILAMLHQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATLH 729

Query: 541  QNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++  + L     +++ +     +    +    V+I+T+H +KGLE  +V+L         
Sbjct: 730  ESEAALLSWFEKQIQGEGRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLA----- 784

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                  +        D  I     + ++  +I +  +  L + T  E  RLLYV +TRA 
Sbjct: 785  ------VPSKDPSKKDINIYYSKERDETLWDIENRNLNALCEETFAEELRLLYVALTRAK 838

Query: 660  DQ---------------LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             Q               L          ++ +   +           ++    +++    
Sbjct: 839  YQMAFALPAQFDKKWNALHYVLSQGEIGKEINLSNSKDTETLLQAFKEKMRDNVEICTKP 898

Query: 705  NKDEWIAYEWSTHHPENTPLE---------------REETIKQLMDEQKIPKKLFSPIKN 749
            N + + A   +T + E    E                 E   +  +      +    + +
Sbjct: 899  NLEAFPALSINTKNDELKAAEFTGNIEQDWRITSFTSIEQGHRRQNYFAESAEKKHAVFD 958

Query: 750  DINEPYILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            D  +    N   I T      ES  L   +    G  +H+  +  +       +      
Sbjct: 959  DAKDYDSQNAIEISTALLNENESNILDLPRGKQVGTALHRHFENCYFSDLANIEEIDKLR 1018

Query: 809  CTKNAKLWPAKEYKNLLLSITRL-LENP---MMTTAMSCDSYSEVSV------------- 851
             +        +  +N L  I+   L N     +    + D   E+               
Sbjct: 1019 QSLQLDETFTEPLQNWLQQISHTPLSNEIGIALADLANKDCIKEMPFYLAIRAHFDVEAF 1078

Query: 852  -----------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ--------- 891
                       S  +   +   ++ G ID +       ++ +YK++              
Sbjct: 1079 NRALKAHHHLPSEPLQFEQIQGMVRGSIDLVFRHNGKYYLIDYKSNFLGSTLADYNQEAL 1138

Query: 892  EIEHIPYTHIAQLSIYEKILKD 913
            + E +   +  Q  IY   L  
Sbjct: 1139 KKEMLHSHYDWQYLIYTLALHR 1160


>gi|317010148|gb|ADU80728.1| DNA helicase II (uvrD) [Helicobacter pylori India7]
          Length = 682

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 87/539 (16%), Positives = 163/539 (30%), Gaps = 115/539 (21%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             I  +I +   +I++DE QDT+ +Q E ++ L+           +   L  VGD+ QSI
Sbjct: 189 ETIAKEISERYYYIMVDEYQDTNALQLEFLKKLS----------FTHHNLCVVGDDDQSI 238

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F GA+   +L   +          +   +++L  ++RS+A+IL   + + S  ++   
Sbjct: 239 YGFRGADISNILNFSKHF--------KGAKVVKLETNYRSSAEILACANSLISHNQHRHK 290

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +         +S +      V        +                             
Sbjct: 291 KT--------LQSFKGSHKSVVCKEYLTQKEESLD------------------------- 317

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +AY I  ++       N          I +L R    +  I      L     I    
Sbjct: 318 --VAYQIKALLKRGENLEN----------IAILYRLNGLSRSIEESLNAL----NIPYRL 361

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD-------IFKICTQ 459
                  +   +KD +A    +  ++D      +L  P     +         +      
Sbjct: 362 IGALSFYERAEVKDALAFMHLVAKKDDRFFIKRILNKPPRGLGKITQELIFSLLDDEGLN 421

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
             E   +  +  K         +  I  I  L   A   S  +F    L      + +  
Sbjct: 422 LEEALKLGAFKDKLTPKNEHALKQFIAMIGRLRE-AFEISVEEFCERFLEETNLLKSYEK 480

Query: 520 R-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                E    + E L     + + + +    L+  L +    +    + N  +V  M+VH
Sbjct: 481 EDNYEEREGFVKELLTLLKEHFKTNPT--HSLLDFLNESVLDVHN--TENAQKVSCMSVH 536

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE   VF++      F H                                      
Sbjct: 537 MSKGLEFKHVFVIGLEEGFFPH-----------------------------------RGF 561

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
            ++S  EE  RL YV +TRA + L +      S   +    +    + ++    +    
Sbjct: 562 NQESDLEEERRLAYVAITRAKEGLQLSYVKERSYFGRKISCSPSVFLEEAKLLKQDNPP 620


>gi|319952833|ref|YP_004164100.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237]
 gi|319421493|gb|ADV48602.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237]
          Length = 1041

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 133/842 (15%), Positives = 279/842 (33%), Gaps = 118/842 (14%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDE----FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
             + T+ + +      + L ++ ++               K     +  LT+   L    +
Sbjct: 287  ALYTKTLAEDKKATIDNLHQTFNKHFQVIKTSFFELAFLKNAYKNIVPLTVLNALQKELK 346

Query: 139  EAKKKNCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
              + +   +    F  +I              +I  ++ ++  H  IDE QDTS +QW  
Sbjct: 347  NLELERDEIPLATFNSIISKEIK----NQPVPFIYERLGEKYRHYFIDEFQDTSELQWSN 402

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +  L  +    ++   +  +L  VGD KQ+IY + G + ++ L      +    N     
Sbjct: 403  LIPLIGNALESQDEKGNNGSLLLVGDAKQAIYRWRGGKAEQFLNLVHQTKNPFVNFP--- 459

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            ++  LP ++RS  +++   +  FS       +S + T T+       G    V       
Sbjct: 460  NVENLPANYRSYHEVINFNNSFFST------ISANITNTVYKELYEEGNKQKV------- 506

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                   N +       F +   ++   +    +  TI+ +           ++    KD
Sbjct: 507  ------NNKEGGFIQISFIAEEDKNEDELYCNEVLQTITTL----------SEKKYPLKD 550

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I +LVR +K   L+       K    I ++ ++  +L ++  +  L  L +F +  ED  
Sbjct: 551  ICILVRDKKHGILLADFLSTNK----IPIISSETLLLKNNPKVNFLANLLKFSVDSEDFE 606

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
            +   +L    F   E           E     E                       I+  
Sbjct: 607  AAYALL----FYLGEQTGQPKHAYISENLNQLERHLSNQYNFE-------------INTL 649

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
            +  S +D F   +              +E    +  FL+  L  E    +S    +   E
Sbjct: 650  KQSSVYDGFEQAVKHFN--------LVDESDAYITYFLDEVLDVEYKQGASATLFLDYWE 701

Query: 556  QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +    +  +     + V+IMTVH +KGLE  VV      S ++     K    + +   +
Sbjct: 702  KKQDMLSISAPLEMDAVQIMTVHKSKGLEFEVVLFPYANSHIYKEIKPKTWLPVAAEEFN 761

Query: 616  PGIPIWIPQSKS---RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                + I ++K     +     +     +  + +   +LYV +TRA   L I        
Sbjct: 762  GFTDVLINKNKEIVNYSETAESIYNEEHEKLELDAFNVLYVALTRAVKCLFIFTKKEYEG 821

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
            + ++ +  +Y  ++ S+     V          +D  + Y++          E     ++
Sbjct: 822  KTENPKTDYYSGLFISYLKQRGVW---------QDLQLHYQFGQLDENKISNEVLHEQEE 872

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
            +  +    ++                 ++      + +    +     ++G  IHK+L +
Sbjct: 873  IKFQYSFKER-----------------TSFKIVTTSGMLWDTTAEAALSKGNTIHKILSL 915

Query: 793  IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS 852
            I T+              K       +E   L L +  ++E+  +    + D+   V   
Sbjct: 916  IETV--DDITPCFEMLVKK--GSLSTEEVPLLELKVRAIIEHRDLKEFYTKDAI--VKNE 969

Query: 853  GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
              I      I+   R D++ I +    I +YKT              +  Q+  Y   ++
Sbjct: 970  TDIITKNGIIL---RPDRLVIKENKATIIDYKTGARNIS--------YKDQIDTYAYAIE 1018

Query: 913  DS 914
            + 
Sbjct: 1019 EM 1020


>gi|293603085|ref|ZP_06685519.1| ATP-dependent DNA helicase Rep [Achromobacter piechaudii ATCC
           43553]
 gi|292818479|gb|EFF77526.1| ATP-dependent DNA helicase Rep [Achromobacter piechaudii ATCC
           43553]
          Length = 687

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 100/616 (16%), Positives = 196/616 (31%), Gaps = 115/616 (18%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              ++       A  +   Y         +DF+DLI     LL   +    +R +    +
Sbjct: 157 AAREAVTPGDVEAANIYRSYAATLAAYQAVDFDDLIRIPALLLSSNEE---VRTRWQNRV 213

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            ++L+DE QDT++ Q+ +++ LT           S     AVGD+ Q+IY++ GA  + +
Sbjct: 214 RYLLVDEYQDTNVCQYRLVQLLTG----------SRAMFTAVGDDDQAIYAWRGATIENL 263

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            +                 +I+L  ++RS   IL   + V             S   +  
Sbjct: 264 AKLTTDYPN--------IKLIKLEQNYRSVQRILAAANAVIEKNPKLFDKKLWSDLGV-- 313

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                G+   V                                     A  IA  +S   
Sbjct: 314 -----GEPILV----------------------------SAMDGEEQEAESIAMKVSA-- 338

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                     +R  Q KD  +L R    + ++    R LK    I    +      D   
Sbjct: 339 -------ARFERQAQWKDFAILYRSNHQSRILEQALRNLK----IPYTISGGQSFFDKAE 387

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---- 472
           ++D+++  R + + +DD +F+    +P     +  +  +         ++   + +    
Sbjct: 388 VRDVLSYLRLLANDDDDPAFIRAATTPKRGIGQATLQVLGQYAATRELSLLAAVAETGVE 447

Query: 473 --FANCGISKFQHVIKYIHELIHIAQFCSPH---------------DFFTLILGAKKGRQ 515
              A   +   +   ++I  +   A   +                 D    I   +   +
Sbjct: 448 SLLAPRQLEPLRTFAEFIRRMQWRAGRGAVSGKDAAPAEPAGVILDDLLEAIQYERHLFE 507

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            F  R        + E   +  R  +    +L +L+  +       +       + V++ 
Sbjct: 508 LFEERPAQTRWQNVLELTGWLKRKAEEDDMTLFDLVQHVALVTMLERGEEDE-PDAVKMS 566

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE P V+L      +  H         P                         
Sbjct: 567 TLHASKGLEYPHVYLAGVEEGLLPHLGKDDEVGDP-----------------------AR 603

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                 +  +E  RL+YVG+TRA   L +         ++   R     + +    D R+
Sbjct: 604 AAENLATRIQEERRLMYVGITRAQRSLNLSWCKRRRRAREDLVREPSRFIEEMGLGDVRI 663

Query: 696 KKIKLTNSINKDEWIA 711
           ++ + T ++N  E +A
Sbjct: 664 QEDEATAAMNPKERMA 679


>gi|158522929|ref|YP_001530799.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
 gi|158511755|gb|ABW68722.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
          Length = 621

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 102/585 (17%), Positives = 193/585 (32%), Gaps = 127/585 (21%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           + F        T   + +A  +   Y+  K    ++DF+DL++ T+D+L        IR 
Sbjct: 143 EEFRVMHAGDRT--MVRIA-DIYEAYDREKSARMLMDFDDLLVRTHDMLNN---RIDIRE 196

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           K  +   H+L+DE QDT+  Q E+++ L  +        +   + +  GD+ Q+I+SF G
Sbjct: 197 KYQEVFCHLLVDEFQDTNPAQMEILKLLIPE--------NRQGSFWCTGDDHQAIFSFTG 248

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A    ++  K I              + L +++RST  IL     +    E         
Sbjct: 249 ASVGNIIHFKSIFP--------DSQQMILHVNYRSTPQILAACQNLIRHNEKQ------- 293

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                H++ +       ++                           + SS    A  + +
Sbjct: 294 ----IHKTLKTDNPDGEEVIVL------------------------ESSSEETEAINLVH 325

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I  +          +      +D+ VL R    + +I  +     + +KI     +   
Sbjct: 326 EIQTL---------KESTDYDYQDMAVLYRCNFQSRIIEEVF----SQHKIPYHIENGLC 372

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC---MLKSPLFNFSEDDIFKIC-TQRHETETVY 467
             D   +K L+   R I S E D        +L  P        I ++      +   +Y
Sbjct: 373 FYDRREVKILLDYLRVISSPETDEGDEALAGILNVPNRYIGRKFIGELRSFAAEKQFHLY 432

Query: 468 EYIQKFA---NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
             +++            Q +  ++  LI  A    P +  +L+  +    +         
Sbjct: 433 RALKELPVTLPYIRKNIQALTGFLDPLISEAGHIRPAEAISLVRTSLDIDRYVSEEDMPS 492

Query: 525 VID----VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
             D     +D+ L    R +        ++ + L+        + S N   V +MT+H A
Sbjct: 493 PDDVKIQNMDQLLLSAARYD--------DIRAFLDYAAGFQNESVSDNREGVSLMTIHKA 544

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE PVVFLV     +                                          +
Sbjct: 545 KGLEFPVVFLVGMVEGILP--------------------------------------TRR 566

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
               EE  R+ +V ++RA   L +  +     +     R   +++
Sbjct: 567 NENIEEERRICFVAISRAMHLLYLSHYMTCLGQAARTSRFLCEIL 611


>gi|227494918|ref|ZP_03925234.1| DNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831370|gb|EEH63753.1| DNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 1119

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 144/1092 (13%), Positives = 305/1092 (27%), Gaps = 222/1092 (20%)

Query: 1    LKNRFG-LSLNESYELIYKDLWPLPYFQVSDINKYVS-LSMETGNPTILKKAQTLQQASQ 58
            L+ R G L+ +     +  D W      VS  + +   L  E G    +     L  A  
Sbjct: 47   LRKRIGFLASSGLLAEVENDPWFAASVNVSTYDSFAGNLVKEHGALVGVDPNARLITA-- 104

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                   + +L     T +    +     EI K +  L  ++         +      ++
Sbjct: 105  ----AASWQILDDLISTYQGKLPEK-APAEIRKAALHLANEMTSHGVTITALEAELARWE 159

Query: 119  MFKSTLAS--------------------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
                T                         L   L   + + K+ + +LDF D +    +
Sbjct: 160  EGIKTTPLTGRKKKLPRYSQSLLDKISERRLLLPLIKKFNDYKRAHNLLDFTDQMAVALE 219

Query: 159  LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            +++       +  +I  E + +L+DE QDTS+ Q E++ +L +D            ++ A
Sbjct: 220  IVRNFPT---VVAEIRSEYDAVLLDEFQDTSVGQMELLSTLFKDM-----------SVTA 265

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            VGD  Q+IY + GA    +     +  ++            L  ++R+  +IL + + + 
Sbjct: 266  VGDPNQAIYGWRGASAASLDLFPIMFAQQME-----TKTFSLSKAWRNKENILDLAN-LI 319

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
            S P   +                      V + + V S  +     +   +    +    
Sbjct: 320  SAPLAQKTYPG------------------VDVIKLVASNSEDADKGKISVFYPATNVEE- 360

Query: 339  ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                    R +A  +     T     +G    +  +   +LVR R+    +         
Sbjct: 361  -------YRYVAEQVKKWKQTYIDPHSG----VNDETYAILVRSRRHFLPMIEALEAQGL 409

Query: 399  DYKI---------SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
            +  +          V+ + R IL   +   D  A+ R + + +     + +L S     S
Sbjct: 410  EAAVVGLGGLVTQPVIADLRAILAASIDPLDGPAVMRLLTNLDLSARDIKVLYSWATQLS 469

Query: 450  ----------EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
                      ++ +        E     +    F+  G  + Q +   +  +  +  F  
Sbjct: 470  KKRNSLEVGRQEFLLDAVDNPPEVGWSADGGAGFSARGHQQVQLLRDRLAAVRAVLDFDV 529

Query: 500  PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYP 558
             +     I       +     + N     +D FL        Q  Y++L   +  LE   
Sbjct: 530  SYIVSKAIRVFDLDVEVDADPYLNLAGTAVDAFLEIANDYASQTEYANLANFLDWLETTV 589

Query: 559  PTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH-------------- 600
               +         + + ++IMTVH AKGLE   V ++      F                
Sbjct: 590  EAEQGLKAPTAQVDSSVIQIMTVHQAKGLEWDRVAVIGLNEGGFPSYEGAHFIKYENPAT 649

Query: 601  ----------------------KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
                                   H  +              +         + +   I+ 
Sbjct: 650  LKSGFSFDARPQSGWLGTIADLPHNLRQDYTFKGEAQILPGVPEFDQYEDCDALEAAIEA 709

Query: 639  LKKS----TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS------ 688
             +       + E  RL YV  TR   +L++         K +   + Y            
Sbjct: 710  YRLDLAYYQEREERRLAYVAFTRPKKELVLSGAWYRIGTKSTQLPSRYLTEGIHAGIVNP 769

Query: 689  --FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
              F + E  +     N       + ++      EN  + +E T               S 
Sbjct: 770  TVFADAETTEVEAAENYSFSGPALIWDAPDLDVENLVVNQETTQIPRKPGVSRKLINDSG 829

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESL-----------------------------LSDN 777
             +        LN S ++        +                              +   
Sbjct: 830  SRVLSQIAQRLNTSGMEITELDFDPADKQQAELIYTAQRALDAYKKRLADKTIEVSVERL 889

Query: 778  QTFNRGL-IIH--KLLQVIFTLPEHKRKNFI------TSYCT---KNAKLWPAKEYKNLL 825
               +    ++H  +  Q +      +  +         ++     + A    A+      
Sbjct: 890  SATSVTSLLLHQKEFAQRLRRPVPAEPSDAALLGTIFHAWAQTWCQKAGQASAEAEPLQA 949

Query: 826  LSITRLLEN---------------------PMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
             +     E                             + +  + V +    +   + + I
Sbjct: 950  ETAENSAETTVSFDPDTLTQKQKLQLGKLQERAKEIFTDELSTVVGLEVPFSLKHEQLTI 1009

Query: 865  SGRIDQISISQQNIFIFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYP- 916
             G+ID ++ +     + ++KT              +      ++ QL++Y K +      
Sbjct: 1010 RGQIDVLAKADGKWRVIDWKTGRPPVLDEKHRENNLSSHLSGYLGQLALYRKAIAQQQGV 1069

Query: 917  -NKSLVCLLIYV 927
                +   LI++
Sbjct: 1070 AENEVEVELIFL 1081


>gi|293189192|ref|ZP_06607916.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309]
 gi|292821864|gb|EFF80799.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309]
          Length = 1142

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 133/958 (13%), Positives = 259/958 (27%), Gaps = 197/958 (20%)

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
             A Y++ K+   VLDF D ++    ++++   +  +R  + +E   +L+DE QDTS+IQ 
Sbjct: 222  IAEYQKRKRDMGVLDFSDQLVLATRIVRE---APAVRESLREEFRAVLLDEFQDTSVIQM 278

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +++  L  D             + AVGD  Q+IY + GA    +       Q   T   Q
Sbjct: 279  DMLSMLFGD-----------HAVTAVGDPNQAIYGWRGASASSLESFLDRFQ---TGEAQ 324

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
            +   + L  ++R+   IL   ++V +         E            + + G       
Sbjct: 325  ESQTLTLSTAWRNDQAILDAANRVAAPLREVAAYQEGKEHLKAQSPVLVARDGA------ 378

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                      P         D      +    AR +                      + 
Sbjct: 379  ---------GPGHVDVAYAPDYEAALGTVVDFARSVRSQ--------------ASEGGKR 415

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            + + VL R+RKD   +    R    D  I         L D  A++D+ A        E 
Sbjct: 416  RTVAVLCRRRKDFAYVDAALR----DAGIPTEIVGLGGLLDQPAVQDVRAALELAYDVEA 471

Query: 434  DLSFVCMLKSPLFNFSEDD---------------------IFKICTQRHETETVYEYIQK 472
                  +L       ++                       +        E     E    
Sbjct: 472  SPWLARLLAGIDLGATDLMALGDWSRVLARSEGTNPHQAVLVDAVDSPPEPGWAAEGRPA 531

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
             +   + + + + + + ++               IL                    LDEF
Sbjct: 532  ISEEAVRRVRLLGERLRQVREGVGRSVTEQVERAILIMGTLDDVIADPLSMGGRAALDEF 591

Query: 533  LNFTLRNEQNSY-SSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPV 587
            +  T   E+++  +SL   ++ L                 +   V IMTVH +KGLE   
Sbjct: 592  IAVTAAYEKDTPGASLGSFLAYLRMADEREDGLEAPLGEPDPRAVLIMTVHASKGLEWDC 651

Query: 588  VFLVDTGSQVFSHKHIKKMHIM-----------------PSLNDDPGIPIWIPQSKSRNN 630
            V +      +F     +K                     P         +          
Sbjct: 652  VVVFGLSDGIFPSHDKRKTVSWLDEPPIATAWLTDASALPHPLRGDRADLPPFLLDVEGE 711

Query: 631  IVSDLI----------KHLKKSTQEEYNRLLYVGMTRAS--DQLIICKHSNTSNEKKSNQ 678
                            + L    + E  RL YV MTRA     L+      T +  +   
Sbjct: 712  AKPSAAYSKWVKGHYGRSLGVHAEREERRLAYVAMTRARSIQLLVGSWIYRTGSTTRQPS 771

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT------PLEREETIKQ 732
            R   +     F +   +    L    ++  W   +W +   E+        +  E   + 
Sbjct: 772  RYLMEARAQLFGDAPDLVDDTLVRVGDRGVWARGDWRSLGIESVSGAGVCLIAPEPGDED 831

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT-FNRG-------- 783
            ++D       +  P +   +   +   +        +L       +     G        
Sbjct: 832  IVDSAAGTASVSFPEEPGPSRQRVAAAAQAVGAQIRDLAQDQDVYEALAQLGDDPAVRDT 891

Query: 784  -------------------------LIIHKLLQVIFTLPEHKRK-------------NFI 805
                                       +  LLQ         R+                
Sbjct: 892  VALIEEYHLGLETPVVDLWAERVPATSVSALLQDADEFARDMRRPMPARPSSFSALGTVF 951

Query: 806  TSYCTKNAKLWPAKEYKNLL------------------LSITRLLEN------PMMTTAM 841
             ++  +   L  A     +                    +   LL +        + T  
Sbjct: 952  HAWVERELHLASADPASEITAGNEVSAGEDATLAGGDDAADEALLTDGERERLERLRTNF 1011

Query: 842  SCDSYSE------VSVSGKINCPKKDIIISGRIDQISI----SQQNIFIFEYKTHHHVPQ 891
                 +E      V++    +     + + GRID +            + ++K+   V  
Sbjct: 1012 RAFVANELSDYRAVAIEEAFSVQVGGVSVQGRIDAVFERVRGDGPRYLVVDWKSGRPVSA 1071

Query: 892  EIEHIPYTH-IAQLSIYEKILKDSYPNK--SLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              +     + + QL +Y++            +  ++ +++ P    +    L     E
Sbjct: 1072 ATKPDKVAYFVTQLRLYQRAWAARMGVDASKVGAMVAFLAGPSHHTL--ESLEAMLGE 1127


>gi|167753572|ref|ZP_02425699.1| hypothetical protein ALIPUT_01849 [Alistipes putredinis DSM 17216]
 gi|167658197|gb|EDS02327.1| hypothetical protein ALIPUT_01849 [Alistipes putredinis DSM 17216]
          Length = 1053

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 115/856 (13%), Positives = 258/856 (30%), Gaps = 109/856 (12%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            +L+  L +    + +    +NT  + +    S  L + L     +      V+    ++ 
Sbjct: 291  ELQPLLAELCARYDRSIRFWNTTDLLRENYRSFALLQDLYGKVRQMCSDENVM----MLS 346

Query: 155  NTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
             T ++L    + + + +I  K+    +  +IDE QDTS  +WE    L  +        S
Sbjct: 347  ETKNILSEFIRHNDAPFIYEKVGNRYDRFMIDEFQDTSTREWENFLPLLGNAMA----QS 402

Query: 212  SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               ++  VGD KQSIY + G + + + R     +            I L  +FRS   ++
Sbjct: 403  EQTSVLIVGDIKQSIYRWRGGDWEILHR-----RAARELGEASTETIHLKENFRSLPLVV 457

Query: 272  TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               +++      +   +  +    +     +G     +L + +   +       ++    
Sbjct: 458  EFNNRMIGKVVESDN-TALNQLLAQAPPHALGGKAREELRDTLQEAYREHAQSARKKGLH 516

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                     +       +   I  ++              + KD+++LVR   D   +  
Sbjct: 517  PGYVNITHYAGEPP---LIERIKALVNKG----------FRPKDMMILVRSGTDGTKVAS 563

Query: 392  LTRFLKNDYKIS-----VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                 K           V+  +  I+        ++A  +  ++  D LS          
Sbjct: 564  ALLDFKRRNTDPRYRFDVMTQEALIVGTAPISSFVIACLKLAMNPADSLSR--------- 614

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                     I        +    + +     +   +                 P + F  
Sbjct: 615  --------AIYNHFSAKPSFDAELTEEEVVFLKSLRLF--------------PPEEAFER 652

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
            I+     +++       E I  L       +       + +   +   ++       +  
Sbjct: 653  IVMRYDLQER------REEIAYLQAVHEQIINFCAGRVADIPLFLKWWDEQGSGRSLSVE 706

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP-----GIPIW 621
                 + I T+H AKGLE  VV +      +         +I+ +   D      G    
Sbjct: 707  QGETTIEITTIHKAKGLEKKVVLIPYCNWTLNPKSSGLSANIVWAEGTDGELEEIGRFPV 766

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
              ++    ++ S            +   LLYV +TRA + L I        +K +     
Sbjct: 767  RYKTSMGESLFSADYYREMIYAHVDNINLLYVALTRAVESLHIFIP-----QKGAKGPNV 821

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              ++  +   ++    ++L              +    E    E +   K       +  
Sbjct: 822  GQLILQNIAPEDGT--VRLDGLEGSCSRDEAAETYEFGEFAGPEPDTHRKAKAAHVLLGD 879

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
               S  +  +  P                E   ++    + G+++H++ +   T    + 
Sbjct: 880  YPTSEPQLQLRLPTERYYE----------EEGRAELTPRDFGILMHRVFENAATT--DEI 927

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
               I +       +   KE   L   + + L +P+            V    +I  P   
Sbjct: 928  YMAIEAM--TQDGVLDEKEAPRLRELVEKALADPVTAEWFGGRWQV-VRNENEIILPGSG 984

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
               + R D++    +   + +YK         +     H  Q+  Y ++L+     ++  
Sbjct: 985  T--TRRPDRVMTDGERAVVVDYKFG-------DRETARHRKQIREYLRLLRQMGYTRT-E 1034

Query: 922  CLLIYVSEPKVFIIPQ 937
              L YV   +   + +
Sbjct: 1035 GYLWYVRLGRTERVEE 1050


>gi|187923606|ref|YP_001895248.1| exodeoxyribonuclease V subunit beta [Burkholderia phytofirmans PsJN]
 gi|187714800|gb|ACD16024.1| exodeoxyribonuclease V, beta subunit [Burkholderia phytofirmans PsJN]
          Length = 1232

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 124/992 (12%), Positives = 283/992 (28%), Gaps = 136/992 (13%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK---KAQTLQQASQTQCIEERF 66
                +  +     + + +   I + ++ + +  + T  K    +  +   ++     +  
Sbjct: 228  GADPQAGFDAACEVWHAERDAIVRLLAEAQDRLSKTSHKPDHVSAAIAAWTEYFAQGDCH 287

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            +      L    +  K     +         E  +      +          +       
Sbjct: 288  APPPKAALKLTASALKKATKVKFEPPEHAFFEHAEALAAAVVAAEAAQRARWLSLVQTWL 347

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                  L A     K+   V+ F+DL+ N    L       W+   +       LIDE Q
Sbjct: 348  DYAPAELVAR----KRTRRVVSFDDLLSNLYRALAAHP---WLADALRTRYPAALIDEFQ 400

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +Q+ +   +                LF VGD KQ+IYSF  A+    L  +     
Sbjct: 401  DTDPLQFAIFSRIFA----------PAGPLFLVGDPKQAIYSFRAADLHTYLAAR----- 445

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +   L ++ RSTA I+   +++F   + A  L       +R    R     
Sbjct: 446  -----EAASACYTLAVNQRSTAPIVEACNRLFEANQQAFVLEGLDYQPVRAGERRR---- 496

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-FSN 365
                         S  + +  +      +L +  +    +   A  I  ++         
Sbjct: 497  -----PPFSDPDASAGDFRIWTLPQGEAALTKREAQREASEACAAEIVRLLRGAREGTVT 551

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +   +I VLV+  K   LI  +       + +  V   +  +   L  + +  + 
Sbjct: 552  IGDEPLAPGNIAVLVQTHKQGSLIKRVLAA----WGVGSVELAQASVFATLDAEQIERVL 607

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
              + +  D       L +         ++++           +        G       +
Sbjct: 608  AAVDTPGDLRRLRAALATDWLGLDAAALWRLEQVADAPSVADDPAHAADAMGW------V 661

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQ 541
            +       +         +  ++   +  Q+ ++    E      + L E +      + 
Sbjct: 662  ERFSRYRTLWHERGFAVMWRTLMRELRVAQRLVAAADGERRLTNVNHLAELVQARAATQP 721

Query: 542  NSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                +L+ L ++  Q      +    ++ N V+I+TVH +KGLE  VVF           
Sbjct: 722  GIAPTLRWLAAQRTQGGGEDAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLRE 781

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                 +      +D+ G  +        +       ++  +    E  RL+YV +TRA  
Sbjct: 782  PPSSGLPDAREYHDETGDAVLHYGC--DDEEAEHASRYAVREQAAERARLVYVALTRAVY 839

Query: 661  QLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +  +    + ++ + K+S +     +V    H+           +     W A       
Sbjct: 840  RCYLVAGTYQSSRSTKESRRSVLNWLVAGEGHDFGDWLAEPPDEAALSARWQALAGGPVT 899

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE------- 771
                P        + + ++    +  +  +   ++  + + S +   G  + E       
Sbjct: 900  LAALPKPARRVPLESLLDRSARMQARANRRPLRDQWRMASFSGLIAAGSKSEETHAPVEE 959

Query: 772  ------------------------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                                           +L+  +    G  +H++ ++      H  
Sbjct: 960  VRPDHDEIADALAVTSTLAPAPQAPVYAEDDILAFPRGAAAGDCLHRMFELADFSEPHTW 1019

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN---------------------PMMTTA 840
             + I     +      ++   +L   +  LL +                       +   
Sbjct: 1020 TDAIRGALRERPAPAVSELAAHLPAMMHNLLRDVVTAELQPGMTLARLNPRRRLNELEFL 1079

Query: 841  MSCDS-----YSEVSVS-----GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
             +  S       E+ +        +        + G ID I       +I ++K++H   
Sbjct: 1080 FAAPSLDFPALRELLIEHGYPDVALEPGVLRGFVKGFIDMIVEYDGRFWIVDWKSNHLGD 1139

Query: 891  QEIE---------HIPYTHIAQLSIYEKILKD 913
               +            + +  Q  +Y   L  
Sbjct: 1140 TAADYAAAPLEAAMASHAYHLQALLYTVALHR 1171


>gi|85711556|ref|ZP_01042614.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
            baltica OS145]
 gi|85694708|gb|EAQ32648.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina
            baltica OS145]
          Length = 1230

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 133/963 (13%), Positives = 288/963 (29%), Gaps = 111/963 (11%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91
                 L    G     K+ Q       +    +     +++    +    K    +    
Sbjct: 248  RVLADLEGVKGVAQKTKQIQKFGDWCASDAQTDVKFTDANWRTISETDLTKLHEKKLAGA 307

Query: 92   KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
            + P    ++ + + +F  +      +    +  A     +++ A + E + +   ++ +D
Sbjct: 308  ELPPYWLQVAQFKAKFEAVHQIKRGFDELINRHA----TQWVKARFTELQNQRAEMNHDD 363

Query: 152  LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
            ++    D L+  D    +   I Q+    L+DE QDT  +Q+E+   +            
Sbjct: 364  MLTRLRDALRGPD-GEQLATTIRQQYPIALVDEFQDTDPVQYEIFNRIYR-----LKEPL 417

Query: 212  SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
                +F +GD KQ+IYSF  A+    L+ +R           +     L  +FRS+  ++
Sbjct: 418  PDTGIFLIGDPKQAIYSFRNADIFTYLKARRD---------TEGRHYSLATNFRSSTQMV 468

Query: 272  TVVDKVFSIPEN--AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
              V+ +F   E                     +   G    +   +     +  P     
Sbjct: 469  EAVNYLFQRAEQYERGAFLFKQEEKNELPFEPVSANGVKTTFRHRLRSQQLEPAPALYWS 528

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIG----TDTIFSNGKKRVIQAKDILVLVRKRKD 385
             S      +  + + LA   A  I N++          ++  ++ + AKDI +LV    +
Sbjct: 529  VSSEQKRKKSDAFNHLASHHAQLIVNLLNDPQAGYYDDNDALQQRVCAKDIAILVNNFAE 588

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
               I             SV  ++R  +      +DL+ + +   +  +  +    + +PL
Sbjct: 589  ADAIRTALSA---RGVKSVYLSERESVYAQPVARDLLYILKACAAPRNASALKTAVAAPL 645

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
             N S  ++ ++    +  E   +    F     +  Q V+  +H L+H            
Sbjct: 646  LNLSLSELIQLQEDENTWERTVDTFIDFHEVWRN--QGVLAMLHRLMHH-FQVPATLLQD 702

Query: 506  LILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             I G +K      I+    +    L+          +  Y   Q   +         +  
Sbjct: 703  KINGERKLADALHIAELLQQNSMALEGMAALVNDFAEKVYER-QSFGASSRTQRDEQQLR 761

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              ++ + V+++T+H +KGL+ P+VFL            IK          D  +      
Sbjct: 762  LESDDDLVKVITIHKSKGLQYPLVFLPFITYTPQEQYRIKPPMTYHDEQGDVQVLWSKDD 821

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK-----HSNTSNEKKSNQR 679
            S             +      E  R LYV +TRA     I         +          
Sbjct: 822  S---------AKSRVLDELLAEDLRKLYVAVTRAQHATFITVENVGQFEHNPLAYLLGDD 872

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
               D +Y +         + + + +  DE                 RE    QL++   +
Sbjct: 873  ALTDDLYKAASEAWGQSDVSVVSKLEDDERFEALQEQVAEYTVLKAREMPRTQLLERWWV 932

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD------------------NQTFN 781
                    +   +       + ++        +   +                   +   
Sbjct: 933  SSYSALRYRAANDYTQSGPQTAVEMNLLEEANTATGEGNVEANDLTYLPSHLHQFPKGAT 992

Query: 782  RGLIIHKLLQVIF----TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-- 835
             G ++H +L+       +      +        +       +   NL   + + L  P  
Sbjct: 993  PGTLLHNVLEHCAIEGFSTVLSDPQRLSDVIAQELRGEVWDEYRDNLAHWLMQYLALPMV 1052

Query: 836  --------MMTTAMSCDSYSEVSV-SGKINCPKKDIIIS--------------------- 865
                     ++   S  +  E  +   ++   + D +I                      
Sbjct: 1053 FSDTMQPTALSDLTSYKAEPEFWLPVIELEAEQLDALIQRHLHPGQSRPRLESIELNGML 1112

Query: 866  -GRIDQISISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDSY 915
             G ID +   Q   F+ +YK++     + ++         +   +  Q  +Y   L    
Sbjct: 1113 KGFIDLVFEHQGQYFVVDYKSNWLGDSDDDYSEVAMTDKILASRYDVQYVLYTLALHRQL 1172

Query: 916  PNK 918
              +
Sbjct: 1173 KQR 1175


>gi|326319149|ref|YP_004236821.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375985|gb|ADX48254.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 688

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 100/619 (16%), Positives = 180/619 (29%), Gaps = 121/619 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YEE       +DF+DLI     LL+       +R K  + + H+L+DE QDT+ 
Sbjct: 163 AVIMQRYEERLTAYQSVDFDDLIGMPLRLLRDFPE---VRAKWQKSLGHVLVDEYQDTNA 219

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  +               AVGD+ QSIY + GA    + +      +    
Sbjct: 220 TQYELLKLLVGE----------RGRFTAVGDDDQSIYGWRGATLDNLKKLPVDYPQ---- 265

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I+L  ++RST+ IL   + V                                L
Sbjct: 266 ----LKVIKLEQNYRSTSAILRAANNVIQPNPK--------------------------L 295

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           + + +     +  P +              +    A R    I ++  T           
Sbjct: 296 YPKTLFSELGEGEPVRVV---------DADNEEHEAERAVARIQSLRATLNPQPA----- 341

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              K   +L R            R       I    +      D   IKDL A  R  ++
Sbjct: 342 --WKSFAILYRANHQAKPFEKALR----KANIPYKVSGGTSFFDRAEIKDLCAWFRLWIN 395

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKF------ANCGISKFQH 483
            +DD +F+  + +P        + K+         +++  +                   
Sbjct: 396 NDDDPAFLRAITTPKRGIGHTTLAKLGEFSTQHKVSMFGALFNHMLEAVLPRKAHESVLE 455

Query: 484 VIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLN 534
             +YI+ L + A+     +    F T  L      Q       +E         + EF +
Sbjct: 456 FGRYINYLEYKARHTHGAEDARTFMTDWLKEIGYEQYLYDSEDSETVAGARWTNVLEFCD 515

Query: 535 FTLRNE------------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
           +  +                   SL E+   +             + + V + T+H +KG
Sbjct: 516 WMSQRAGGQIEDTAGAVVARETKSLLEVAQTIALLS--TISEREKDEDLVVLSTLHASKG 573

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE P V LV     +                               +      +      
Sbjct: 574 LEWPHVMLVGVTEGMLPF------------------------KLDDDEGRQQKVSDDTLQ 609

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             +E  RL+YVG+TRA   L +         ++         + +   +    ++     
Sbjct: 610 RLQEERRLMYVGITRAQRSLAVSWTKRRKKGREMVAAQPSRFIAEMGLDKNTAREDPREK 669

Query: 703 SINKDEWIAYEWSTHHPEN 721
                   A   S      
Sbjct: 670 LRALRAEFAARKSPAPTAP 688


>gi|282858133|ref|ZP_06267328.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455]
 gi|282584055|gb|EFB89428.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455]
          Length = 658

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 102/692 (14%), Positives = 190/692 (27%), Gaps = 144/692 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  K  W +    V                 + ++ + L   S        
Sbjct: 31  GAGSGKTRVLTSKIAWLIAAQNVKPWRVLAVTFTNKAAREMSERVEKLLGGSLGGAQICT 90

Query: 66  FSLL-SSFFLTQKFTPQKNIITQEI--------NKKSPDLKEKLKKSQDEFIKIRDRFNT 116
           F     +     +   +                      + ++L    ++F         
Sbjct: 91  FHSYGLNLLFRNRELLRDRGYNPSFVIYDRSDSLTAVKHVMQELNIDTEKFAPSWALNRI 150

Query: 117 YKMFKSTLASLT-------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            ++  S   +             +   Y +A ++    DF+DLI     LLK        
Sbjct: 151 SEIKSSADPASVQFSAYDNFMGDVYEKYSQALREQGAFDFDDLIAVPLALLKSDPELLER 210

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             +  Q    +L+DE QD +  Q++++R L                L  VGD  QSIY +
Sbjct: 211 ERERLQ---WVLVDEYQDVNGSQYQMMRLLVG----------GSNNLMVVGDPDQSIYGW 257

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA    ++  +R              +  L  ++RSTA IL   +++    +N +  + 
Sbjct: 258 RGANYATIMNFERDFPN--------ARVTLLEQNYRSTAMILDASNQLIRHNKNRREKNL 309

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            +            +   V +W     + +                          A  +
Sbjct: 310 RTNR---------EEGQKVGVWYLRDEKAE--------------------------AEAL 334

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I  +                  DI VL R    + ++         +  I       
Sbjct: 335 AREIVGLTAA-----------YHYGDIAVLYRMNALSRVLEQAL----IEAGIPYRIVRG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-----E 464
               D   ++D++A  R  ++  D ++   +   P        + K+     E      E
Sbjct: 380 TSFYDRKEVRDVVAFMRLAVNPWDLVALNRVGNLPARALGPKSLEKLGVWMRENAKGAAE 439

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHE----LIHIAQFCSPHDFFTLILGAKKGRQQFIS- 519
            V+  ++        K       + +    L+              IL         +  
Sbjct: 440 DVWGTVKAKKGGLTGKAAEGAVQLADHMLTLLERQHSLPL--VLDWILNGVGYENLLMKA 497

Query: 520 --RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMT 576
                 E ++ + E L+     E         L   L+Q          +   + V + +
Sbjct: 498 EPADWEERVENVRELLSVAPEGEN--------LAEVLDQVSLYTDMDTQNETRDAVNLSS 549

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE PVVF+      +F H                                    
Sbjct: 550 LHAAKGLEFPVVFMTGMEEGIFPHSRSSDSQEELEEERRL-------------------- 589

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                          YVGMTRA ++L +    
Sbjct: 590 --------------CYVGMTRAEEKLYMSGAR 607


>gi|313157484|gb|EFR56903.1| UvrD/REP helicase [Alistipes sp. HGB5]
          Length = 1047

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 136/954 (14%), Positives = 277/954 (29%), Gaps = 129/954 (13%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            S     ++L  +     +          E     +   A      +        F+    
Sbjct: 195  SLARSREELGRIVGEATARAAATKQQMRERAAEAVRIMADAGVGPTDFTGKSRSFAHY-- 252

Query: 72   FFLTQKFTPQK---------NIITQEINKK---SPDLKEKLKKSQDEFIKIRDR----FN 115
             FLT      K         ++ T+    K   +  L  +L+    E   + D     +N
Sbjct: 253  -FLTVAAGELKPYTATVGKMSLTTEGWAPKGSPAAPLAARLQPLLREMCDLYDANVRSWN 311

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYK 172
            T  + +    S  L   L A  ++   +  ++    L+  T  +L +    + + +I  K
Sbjct: 312  TCDLLRENYRSFALLSDLYAKVQQLCDEQNMM----LLSETKYILSEFIGHNDAPFIYEK 367

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            +     H +IDE QDTS+ +WE    L ++        S   ++  VGD KQSIY + G 
Sbjct: 368  VGNRFEHFMIDEFQDTSVKEWENFLPLLQNAMS----QSEATSVLIVGDIKQSIYRWRGG 423

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            + K +       Q +A        +  L  ++RS   ++   +++          + + T
Sbjct: 424  DWKILHS-----QAQAQLDPASTEVEILRENYRSLPAVVEFNNEIIGRVVETDNRALNET 478

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     I       L + +   +       +              +       +   
Sbjct: 479  LDEAAAKGGINPAAAAALHDTLRDAYRGHAQTPRRRSDRPGYVSVSTFAEQPP---VVER 535

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-----VVGN 407
            I  ++              + +DI++LVR   D   +       K           V+  
Sbjct: 536  ICEVLDKG----------FRPRDIMILVRGATDGAKVAAELLDFKRRNTDPRYRFDVMTQ 585

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            +  I+ +      + A  R  L+ +D LS                ++     R     + 
Sbjct: 586  EALIVGNAPVSSFIAASLRLSLNPDDSLS--------------RAVYNHYLGRGFDRPLS 631

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
            +                           +  SP + F  I+     +         +   
Sbjct: 632  DDE------------------RTFFRSIRLLSPEEAFERIVMRHGLQD------DKQQTA 667

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
             L       +    +  + +   +   EQ       +   +   V I T+H AKGLE  V
Sbjct: 668  YLQAIHEQIIGFCSSKIADIALFLDWWEQQGQNRSLSVEESETTVEITTIHKAKGLEKRV 727

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDP----GIPIWIPQSKSRNNIVSDLIKHLKKST 643
            V +     Q+         +I+ +         G      +     +  S         +
Sbjct: 728  VLIPYCSWQLDPKSGGNVTNIVWAEAHGDAEAVGRFPVKYKKSMAESGFSAEYYRELVYS 787

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
              +   LLYV +TRA++ L +         K         ++ D         + + T +
Sbjct: 788  HVDNVNLLYVALTRAAESLHVFIP--QKGGKTVGGLLLQSILTDGDKALAGSAEGRYTVT 845

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
               + +   ++               +            +         +  +  PS   
Sbjct: 846  ETGERFEFGQFRGP------------VADGGKTSGAEHVVLENYPTARADLRLRLPSQRY 893

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
             + +  +E         N G+++HK  +      E + +  +     +      A E   
Sbjct: 894  FEQEEEVE-----LSPRNFGILMHKAFENADD--EEQIRLAVERM--QADGTLSAAEAAA 944

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
            L   I R L +P      +      V    +I  P        R D++ I      + +Y
Sbjct: 945  LRRMIARALAHPAAREWFAGGWER-VRNENEIIIPGGSSA--RRPDRVMIRGTRAVVVDY 1001

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
            K     P         +  Q+  Y  +L+     ++    L YV   ++  + +
Sbjct: 1002 KFGGREP-------ERYRRQVREYLALLRQMGYTET-EGYLWYVKLGRIEKVEE 1047


>gi|312792557|ref|YP_004025480.1| uvrd/rep helicase [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877156|ref|ZP_07737126.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796056|gb|EFR12415.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312179697|gb|ADQ39867.1| UvrD/REP helicase [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 950

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 143/878 (16%), Positives = 305/878 (34%), Gaps = 114/878 (12%)

Query: 93  SPDLKEKLKKSQDEFIK--------IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            P+   KL   +    +        +++ FN+ K  +          ++  +  +     
Sbjct: 121 YPETLGKLSHERFFIEEYFHFAESIVQEYFNSAKYVEKACHLEDEMFHVFDYLSDRLNDQ 180

Query: 145 CV--LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +  L ++ ++  T +LL   +V+  +          +++DE QD++ +Q  +  ++ E 
Sbjct: 181 FLKELTYDLVLHRTFELLSIPEVNRDV----KSRFKFLIVDEFQDSNFLQKSIFENIAE- 235

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        ++ VGD+KQSIY F GAEP+                     ++EL  
Sbjct: 236 ------------NIYYVGDKKQSIYRFQGAEPEVFDE----------AIENCSQVLELCE 273

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           +FR+ ++       +    +    +   +   + ++    G +  V++            
Sbjct: 274 NFRTNSE-------LGKKIDKIATILFPNYKPLSYKHQADGFLKVVEIV----------- 315

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG--KKRVIQAKDILVLV 380
                       +  +E      A  +A  I  M+ +    S G   KR ++  D  VL 
Sbjct: 316 ------------NKAREEIIQNEAIYVAKKIKEMVESGVEISVGGKPKRKVKYSDFAVLS 363

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           RK      I  + + +  DY + +  N +  L +   I  L+     +   +    ++ +
Sbjct: 364 RK---IQNIAHIYKKVFEDYDVPLDINFKRGLLEQKEIVPLLGFLEILQYPDKKSGYLRL 420

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           L + +F      +            ++  + K           V+K+I +          
Sbjct: 421 LANDIFKVDRFTL------------LFCEMSKIECYVPE---DVLKFIAKQRDNLFVKKI 465

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            +         +   +    FG    + +  F +     E++   S+++L S +      
Sbjct: 466 SEILYEFEDMFEYSYKVYKFFGKGAYENVRLFYDLA---EESKSFSIEDLYSYVNYQGER 522

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                S + + V I ++H+AKGL  P+VFLV        + + +   +  S +      I
Sbjct: 523 FSSFSSLDDSAVLI-SIHSAKGLSFPIVFLVGLCESTG-YFYGRSPKLRGSYDTSTREYI 580

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQR 679
             P    +    + +    K+  +EE  RL YV +TR    L +       + +K+   +
Sbjct: 581 IAPFWMEKE--YTRIKNISKQQEKEELKRLFYVAITRPMAGLFLINSSLREAIKKRGGAK 638

Query: 680 TWYDM--VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
           ++ +   +       E +   K    I +DE  + ++ +    N        I  L DE 
Sbjct: 639 SFGEEVGLSYILTKAEEIGIEKEVVEIKEDEKTSQDFVSRSENNLSFALPAVI--LPDEF 696

Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ----TFNRGLIIHKLLQVI 793
           +   +  SP      +      S     G    +   S  +        G  +H++L+  
Sbjct: 697 ENRFRFLSPSHIMDFKRCPAMFSLKYVMGLPVFDEQSSKEEIQQNAKVLGTTVHRVLE-- 754

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
             L   K    + S           ++ K +   I    E+      +      E S   
Sbjct: 755 --LTSLKDIQSLDSNIALAVLENDFEDEKIVKELILNFFES-QFAKEIKDKVIKEES-EL 810

Query: 854 KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                  + +I G ID++   +  IF+ ++KT+ H          ++I QL IY   +K+
Sbjct: 811 PFYFKLSNQMIYGIIDKVYHLEDKIFLIDFKTNLHFDDAK---FSSYIPQLFIYTMAMKE 867

Query: 914 SYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            +P K++   + ++ E K       + ++   ++   I
Sbjct: 868 RFPQKNIFSSIFWLREGK--KFDYEQKDEHLEDVIDVI 903


>gi|51893634|ref|YP_076325.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51857323|dbj|BAD41481.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 671

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 91/658 (13%), Positives = 201/658 (30%), Gaps = 129/658 (19%)

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            +    L +    +   +     +       + K    +   +  R  ++ +   +    
Sbjct: 120 TIQLALLKEAIAERNFDLKANRPESFLWRIGRYKNELADPESLLARQPSHDLMDWSRVLE 179

Query: 128 ----------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                      L   +   YEE  ++N ++DF+DLI     +L+++     IR  + +  
Sbjct: 180 MIRSTDRYVNRLTAEIWKRYEEKLRRNDMVDFDDLINLFVQMLREKPD---IRADLQRRF 236

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            ++ +DE QDT++ Q  +++ L              + + AVGD+ QSIYS+  A+ + +
Sbjct: 237 TYLQVDEFQDTNVAQLHMVKLLAG----------KRQNVMAVGDDAQSIYSWRSADIRCI 286

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L  +R               I L  ++RST  I+   +++ +     +     +      
Sbjct: 287 LEFERHFP--------GARTILLEQNYRSTGAIIRAANRLIAHNAGQRPKRLFTAAP--- 335

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                      +    V  + +++ +                      A+ +   I    
Sbjct: 336 -----------EGRPVVAHEAETEVDE---------------------AKWVVQRIRAGA 363

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                         +  D  +L R            R       I           D   
Sbjct: 364 EAGR----------RWGDFAILYRTTAQGRPFEEELRE----ASIPYQVVGGPRFYDRRE 409

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA--- 474
           ++D +A  R + +  D +S   +L +P     E  + ++     +         + A   
Sbjct: 410 VQDSLAYLRLVHNPRDSVSLERVLNAPRRGIGERGLQRLLALAAQRGVDLIAALRVAADE 469

Query: 475 ----NCGISKFQHVIKYIHELIHIAQFCS--PHDFFTLILGAKKGRQQFI---SRFGNEV 525
               +   +  + +  ++       +            +L              R     
Sbjct: 470 GVLQDEAAAGARQLHDHLRRAREALERQPGRFAAAMERLLRESGYLAYLQEEDRRKEERR 529

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            +V++  +      E+ S      L + L+       +   +  + V++ T+H+AKGLE 
Sbjct: 530 SEVVESLIAAMHEFERRSPDG--GLGAYLDHLALLEGQEDESGGDVVKLQTIHSAKGLEY 587

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVF+V     +  ++                                     L++   E
Sbjct: 588 PVVFVVGMEQGLLPYQR-----------------------------------ALEEGNLE 612

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           E  RL YV +TRA ++L +          +    T    + ++             ++
Sbjct: 613 EERRLCYVAITRAREELYLTGARVRWQRGEMVLTTPSQFLSEALGPGPAQPLWVPASA 670


>gi|126433515|ref|YP_001069206.1| exodeoxyribonuclease V, beta subunit [Mycobacterium sp. JLS]
 gi|126233315|gb|ABN96715.1| exodeoxyribonuclease V, beta subunit [Mycobacterium sp. JLS]
          Length = 1115

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 134/1021 (13%), Positives = 275/1021 (26%), Gaps = 168/1021 (16%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            +  N+    +        + +   +   ++        T  +  Q + ++       +  
Sbjct: 94   VGDNQLVAHLIDAPDDERHLRKQRLKDALAGFDAATIATTHQFCQLVLKSLGVAGDTDTG 153

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLK----EKLKKSQDEFIKIRDRFNTYKMFKS 122
              L             ++      ++  D      + L+ + +                 
Sbjct: 154  VQLVESLDDLTAEIVDDLYLAHFGQQRDDPVMTRGQALELAHEVVGNAGTELRPQNPPPG 213

Query: 123  TLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            T +++    AK + A  E  K++  +L ++DL+    + L   D  A  R ++ +  + +
Sbjct: 214  TESAVRVEFAKAVCAELERRKRRLGILHYDDLLSRLANALTGEDSPA--RTRMHRRWSIV 271

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDT  +QW+V+              +   TL  +GD KQ+IY+F G +    L  
Sbjct: 272  MVDEFQDTDPVQWQVLDR----------AFTGRSTLILIGDPKQAIYAFRGGDIATYL-- 319

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                      A        L  ++RS  D++  +  V    E             RH+  
Sbjct: 320  --------HAASTAGHRQTLGTNWRSDGDLVDRLQVVLRDAELGDPEIVVRPVEARHKGH 371

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            R    G        +          +   T   D L    SA + A      I  ++ + 
Sbjct: 372  R--LAGAPHNDPFRLRIVSRDTFGIRGDRTIAIDRLRAHISADLAAD-----IGRLLASG 424

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
              F + K   I+AKDI V+V K KD            +   I  V      + +  A  D
Sbjct: 425  ATFCDKK---IEAKDIAVIVEKHKDARACFDAL----SVAGIPAVYTGDSDVFNSPAGDD 477

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
             + L                  +  F  + +++     +  +                  
Sbjct: 478  WLCLLEAFDQPHRPGLVRAAATTMFFGRTAEELAARGDRLTD------------------ 519

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
               +   + E    A+       F        GR+    R G   +  L           
Sbjct: 520  --EIADRLREWADHARERGVAAIFEAANMTGMGRRVLSWRDGERHMTDLAHLTQVLHETA 577

Query: 541  QNSYSSLQELISELEQYPPTI------KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               + +L  L   L              R    +   V+IMTV  +KGL+ PVV+L    
Sbjct: 578  HREHFNLPALRDWLRTQREERSGATERNRRLDNDAAAVQIMTVWVSKGLQYPVVYLPFA- 636

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                     + +     +         +      +   + + +  +K    +  RL YV 
Sbjct: 637  -------FNRNIQTRDCVLFHDDRTRCLHIGGDDSPDHAQVERLGRKEAAGDDVRLTYVA 689

Query: 655  MTRASDQLIICKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            +TRA  Q++     +              +   + T  D       +D   +      + 
Sbjct: 690  LTRAQSQVVAWWAPSWDEPNGGLSRLLRGRAPGETTVPDRCDPPKVDDADARTALRAWAD 749

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS------------------- 745
                 +            P E    +      + I                         
Sbjct: 750  LGGPVLEDSEIAAPAAPEPREHPTDLDVRHFHRGIDTAWRRTSYSGLLRAAEGSPAVAGV 809

Query: 746  ---PIKNDINEPYILNPSTIDTKGKTNLESLLSD-NQTFNRGLIIHKLLQVIFTLPEHKR 801
               P   ++++     P +        + S +++       G ++H +L+         +
Sbjct: 810  TSEPEVGELDDEAAEVPVSESHTDVDPVPSPMAELPTGAKFGSLVHAVLEHADPFAADLK 869

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSG 853
                              E + L  ++  + + P+        +      D   E+    
Sbjct: 870  AELEHRIREHMVWWPVDVEAEALADALLPMHDTPLGPLVPNVTLRQIGLRDRLRELDFEF 929

Query: 854  KINCPKK-------------------------------------------DIIISGRIDQ 870
             +                                                   ++G ID 
Sbjct: 930  PLAGGDVRGGAPAITLADVGHLLGAHLSADDPMAPYVDRLTDRALGGQSLKGYLTGSIDV 989

Query: 871  ISISQQ----NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +   +        + ++KT+     E       +              + +  L  LL  
Sbjct: 990  VLRVRDTTGVRYVVADWKTNWLGEPEKPLTAADYSR----TRMAEAMLHSDYPLQALLYC 1045

Query: 927  V 927
            V
Sbjct: 1046 V 1046


>gi|218133114|ref|ZP_03461918.1| hypothetical protein BACPEC_00976 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991987|gb|EEC57991.1| hypothetical protein BACPEC_00976 [Bacteroides pectinophilus ATCC
           43243]
          Length = 621

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 115/604 (19%), Positives = 206/604 (34%), Gaps = 122/604 (20%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           ++ D  E + +   E  +++       M+ S   S T+ + +   Y    + N ++DF+D
Sbjct: 131 ETEDENEFISQLLAEISRVKSEGINPDMYYSINCSETVFRDIYRDYAHMLESNRLIDFDD 190

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +++   +LL K      I      +  +IL+DE QD + +Q+EV++ L            
Sbjct: 191 MLVYCYELLSK---RPDILKAWQNKFRYILVDEFQDINRMQYEVVKLLAG---------- 237

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
             + +F VGD+ QSIY F GA+P+ +L  +R  +            I+L +++RST  I+
Sbjct: 238 KTQNIFIVGDDDQSIYGFRGAKPEIMLNFERDFKN--------VMRIKLDVNYRSTPQIV 289

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               +V                                               +     +
Sbjct: 290 NSARRVIEHNIKRFKK----------------------------DIRTVNATGEPVDVRN 321

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
           + D++ + S+       I   I   +                 DI VL R          
Sbjct: 322 FQDTIAENSA-------IVDMIRREVSAG---------NAAYSDIAVLTRTNIGGR---- 361

Query: 392 LTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                  +Y I  V  D    L +H   K++ A  R  +      +F+ ++  P    S 
Sbjct: 362 QLMGKFIEYNIPFVTRDSIPNLYEHWIAKNIFAYIRLAMGSRSRDTFLQVMNRPKRYISR 421

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           D + +     +  ++ Y       +  + +   +   I  L   +   + +     I   
Sbjct: 422 DMLMEEVVDFNILKSRYSDR----DWMVERIADLEGDIKVLERCSPLAAVNYIRRAIGYD 477

Query: 511 KKGRQQFISRFGNEVI--DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH--- 565
              R+    R  +E     V+DE      +      ++  E  + +EQY   IK      
Sbjct: 478 CYLREYSAERRISEDDLFAVIDELQESASQF-----NTYDEWFAYIEQYTEEIKTQTAKH 532

Query: 566 ---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
              SA+ N V I T+H+AKGLE P VF++D    V  +                      
Sbjct: 533 YGRSADSNAVTICTMHSAKGLEYPEVFIIDANEGVTPYS--------------------- 571

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                         K       EE  R+ YV MTRA  +L +       N+     R   
Sbjct: 572 --------------KAALDEEIEEERRMFYVAMTRAKSRLHVYSVRERYNKTLEVSRFVK 617

Query: 683 DMVY 686
           +++ 
Sbjct: 618 EILK 621


>gi|221201441|ref|ZP_03574480.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2M]
 gi|221208004|ref|ZP_03581010.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2]
 gi|221214000|ref|ZP_03586973.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD1]
 gi|221166177|gb|EED98650.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD1]
 gi|221172189|gb|EEE04630.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2]
 gi|221178709|gb|EEE11117.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2M]
          Length = 1236

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 123/977 (12%), Positives = 261/977 (26%), Gaps = 123/977 (12%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             LW      +  + +    ++   +      A+            +  + L    L    
Sbjct: 240  RLWEAERDAIDALLRAAQPALNQRSHKPDAIAEAFAAWGAHFAQRDAAAALPKAALKLTR 299

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T  +    +          +     +              +        T    L     
Sbjct: 300  TALEKATKKGGATPEHPFFDVADALEAAVAAADAAQRARWLALIAEWLDTAPAELAER-- 357

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 358  --KRTRRVVSFDDLLANLYHALHAHP---WLADTLRARYPAALIDEFQDTDPLQFAIFDR 412

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 413  IFA----------PAGPLFLVGDPKQAIYSFRAADLHTYLAARAR----------ASACY 452

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   ++ F     A  L       +R  + R       +         
Sbjct: 453  TLAVNQRSTPAIVEACNRFFQSNPRAFVLDGLDYYPVRAGT-RTRAPFADETDPAPSGDF 511

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                 P  +      D+  Q + A             M G         +  +   DI V
Sbjct: 512  RIWMLPGGDGTLLKRDAHAQAAQACAAEIA-----RLMRGAREGHVRLGETPLSPGDIAV 566

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            LV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D     
Sbjct: 567  LVQTHRQGSLVKRVLAA----WGIGSVELAQASVFSTIDAEQLERVLAAIDAPGDLRRLR 622

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
              L S  F      ++++     + +  ++         +S  +   +Y           
Sbjct: 623  AALASDWFGLDAGALWRMEQ--GDADAQHDAGATDTADAMSWVERFSRYRLLWRERGFAV 680

Query: 499  SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-ELEQY 557
                F   +  A++             I+ L E        +     +L+ L +  L+  
Sbjct: 681  MWRTFARELRIAERLMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGG 740

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                +    ++ N V+I+TVH +KGLE  +VF                +      +D+ G
Sbjct: 741  GEEAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPPASALPDAREYHDEAG 800

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKK 675
              +        +   +   +   +    E  RL+YV +TRA  +  +    + ++ + ++
Sbjct: 801  DAVLHYGC--DDEAAAHAARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRSTRE 858

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
            + +     +V  +  + +        ++     W A           P            
Sbjct: 859  ARRSVLNWLVAGAGRSFDAWLGEPPDDAELDAAWRALAGGPVSVAPLPAPARRERLPAGH 918

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDT------------------------------- 764
            +           +   +   + + S++                                 
Sbjct: 919  DASQTLAARHATRVLRDAWRMASFSSLTASIAREEAGVAPVPDDELRPDHDALAALVPGA 978

Query: 765  --------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
                      +   + +L   +    G  +H+L ++                        
Sbjct: 979  DIGAAATVAPEPPDDDILVFPRGAAAGECLHRLFELSRFAEPASWPAAALGALHDRPVEA 1038

Query: 817  PAKEYKNLLLSITRLLEN---------PMMTTAMSCDSYSEVSVSGKINCPKKDII---- 863
                 + L   + RL+++           +         +E+             +    
Sbjct: 1039 EPALAERLPAMMVRLVDDVVHTELVPGLRLADLDPSKRLNEMGFLFPAPSLDLGALRRLL 1098

Query: 864  ------------------ISGRIDQISISQQNIFIFEYKTHH---------HVPQEIEHI 896
                              I G ID I       +I ++K++H             +    
Sbjct: 1099 VTHGYPDVALDAGTLAGFIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGPQALDAAMA 1158

Query: 897  PYTHIAQLSIYEKILKD 913
             + +  Q  +Y   L  
Sbjct: 1159 DHAYHLQALLYTVALHR 1175


>gi|311746368|ref|ZP_07720153.1| putative UvrD/REP helicase domain protein [Algoriphagus sp. PR1]
 gi|126575253|gb|EAZ79585.1| putative UvrD/REP helicase domain protein [Algoriphagus sp. PR1]
          Length = 1069

 Score =  234 bits (596), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 137/939 (14%), Positives = 297/939 (31%), Gaps = 116/939 (12%)

Query: 25   YFQVSDINKYVSLSMETGNPTILKKAQTLQQA-----------SQTQCIEERFSLLSSFF 73
             F     N+ +++S E G    L +     +             +     +    L++  
Sbjct: 217  SFAKERKNEIIAISKELGKQAELIRVSNGLEWKDFFRGFAKVFEKFGDRNQPLPELTAAT 276

Query: 74   LTQKFTPQKNIITQEINKK--SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
            L +   P+         K       ++ L +   +   +  ++NT +          + +
Sbjct: 277  LAKIDNPEAWFSKSSKKKDSILAAYEQGLNQMLHQIQALTSKWNTLQAIAKNTYVYGVFR 336

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDT 188
             L       K +  +L    LI ++N+ LK+    + + +I  K+  +  + LIDE QDT
Sbjct: 337  NLLDELSLIKDEENIL----LISDSNEFLKEITKGNDTPFIYEKVGNQYKNYLIDEFQDT 392

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S  QW+  + L E+           +T   VGD KQSIY + G E K +L +        
Sbjct: 393  SGFQWDSFKPLLENAL------GQNQTNLLVGDVKQSIYRWRGGEMKLLLSQVED----- 441

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                ++  +  L  +FRS   I+   + +F    +A       +  +++           
Sbjct: 442  EIGKERIKLENLDTNFRSLPTIIQFNNAIFKALPSAFEEVLTESYGVQNSQILSDAYADS 501

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                             +  +    +   + +   I+  ++   +  +            
Sbjct: 502  FQKVSPKKSKSEFQGKVKLEFIDSKEEEVEGNFDDIVLSKLPELVMELQDHGYELE---- 557

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTR---FLKNDYKIS--VVGNDRFILTDHLAIKDLMA 423
                  DI  LVR++ +   I            D   S  V+ ++   L    ++K L++
Sbjct: 558  ------DIAFLVRRKSEGEAIADTLMNYGAANPDSGYSFDVLSDESMYLNKSASVKALVS 611

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
               ++ +  D + +  M            +  +       E     ++K      SK + 
Sbjct: 612  GFNYLHNPSDKVQYKTM---------WYYLAVLMELPVNHELF--ALEKIPTELQSKLEA 660

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
              +      ++       +    ++         +   G E +  +  F         N+
Sbjct: 661  FQEK----ENLMLQLPLMEALEELIKVLG-----LMEIGLE-LAYISGFKEAVYDFTANN 710

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + L   +   E             HN +RI+T+H +KGL+  VV +      +F     
Sbjct: 711  RADLSGFLEWWETNQTKRTVKIPEGHNAMRILTIHKSKGLQFKVVLMPFLKWTIFDTVKG 770

Query: 604  KKMHIMPSLNDDPGIPIWI--PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              +       +     I     +    ++  SD           +   +LYV +TRA D 
Sbjct: 771  NVVWSPFEDREKGLSAIIPLTLEGSLADSDFSDTYAEEAIMAYLDSLNMLYVALTRAEDV 830

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
                         K++       + DS  N +               +   +W  +  + 
Sbjct: 831  FYGYVPFKEKIGSKNSIEIQLQQLMDSQVNIDGEISFSSQFDQESKVFEFGDWPVNQVKK 890

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
               +R   +                   + +E   L    +D   +      +   +   
Sbjct: 891  LKPKRPPEL--------------RWAYKNWSEVLTLKKYAVDFSLE-----GMEQRKKQK 931

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-SITRLLENPMMTTA 840
             GLI+H++L++        + + + +  T         E K L+   +  L  N +  + 
Sbjct: 932  FGLIVHEILEL-----SANKSSALQNLQTFYFDGRLNDEEKQLVEKQLETLFNNSLFASW 986

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISG----RIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                       +G I   ++ I++ G    R D+I ++  +  I ++KT           
Sbjct: 987  FD---------TGGILLAEQGILLPGGKQKRPDRIIMNDTDAVIVDFKTG--------EA 1029

Query: 897  PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
               +  Q+  Y +++ +    K +   + Y+    +  I
Sbjct: 1030 HSRYANQVREYMELVNNL-SQKPVKGYICYLETGIIEEI 1067


>gi|288921365|ref|ZP_06415645.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288347217|gb|EFC81514.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 1148

 Score =  234 bits (596), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 120/991 (12%), Positives = 268/991 (27%), Gaps = 131/991 (13%)

Query: 1    LKNRFGLSLNESYELIYKD---LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57
            L+ R  + L              W L   +V   +           P    + + L + S
Sbjct: 66   LRERLAVRLGAGAVGPAAWTFHAWCLALLRVYGADTASGGPRLLSGPEQDARLRDLLEGS 125

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
            +          L+    T+ F  +  ++                 ++   + +       
Sbjct: 126  RELGRPAWPDALAGALGTRGFAEEVRMLM----------------ARAREVGVDPPALAR 169

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
               +   A           Y +A      +D+ DL+ +  +L         +   + Q  
Sbjct: 170  IARRVGRADWKAVAEFYGDYLDALGAEGAIDYADLVHSAANL----TAQQPVLASLRQRY 225

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              + +DE QDT   Q  ++ ++                L   GD  Q+IY+F GA+ + +
Sbjct: 226  QAVFVDEYQDTDPAQERLLAAVAG----------GGGDLVVFGDPDQAIYAFRGAQVRGL 275

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ-GLSEDSTTTIR 296
            L        R    G    +  L    R     L    +V +   +A   +         
Sbjct: 276  LDFPARFPSR---DGSPAPVTALRRCRRMAPAPLAASRRVAARLPSAGLPVRYVRAHRDL 332

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL----------- 345
              +      G V +     +  +++            + +     A ++           
Sbjct: 333  VPADSAAGPGQVSVRTYPTAGAEAEAVADLLRREHLENGVGWADMAVLVRSTAGLGVLRR 392

Query: 346  ---ARRIAYTI------------SNMIGTDTIFSNGKKRVIQAKDILVLVRK---RKDTP 387
               A  +  ++            + ++ T    ++   R +  +    L+       D  
Sbjct: 393  VLTASGVPVSVGGGELPVAREPAAELLLTALRCADDPSRHLTPETARALLTSPLGGADPA 452

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
             +  L R L+     + V   +       A  D       + S +         + P   
Sbjct: 453  GLRALGRELRALDAATTVSPAQDDALARDAAADDAPAQEDVPSPDGGDEHAGAARMPGTP 512

Query: 448  FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             S  ++ +      +   +   +       + +   +++ +     + +  +P D    +
Sbjct: 513  ASSSELLRAAVADPQRMLLM--VPDELAAPVHRLGQLLRTVRA--ELRRGGAPEDALWTL 568

Query: 508  LGAKKGRQQFISRFGNEVI---------DVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
              A     +                   D +    +   R  +             E   
Sbjct: 569  WSASGWGPRLERASAAGGAAGRSADRDLDAVVALFDAVERLGERRGPGFGVASVVSELTH 628

Query: 559  PTIKRAHSANHNE---VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              I             VR++T H +KGLE  VV +      V+     +   +     D 
Sbjct: 629  QQIAPDTETRAGRPATVRLLTAHRSKGLEWQVVVVCGVQDGVWPDLRQRHSLLGAEQLDA 688

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            P           R           +     +  RL YV +TRA  +L++       ++ +
Sbjct: 689  P----HRGGGGVRPP-------RTRDELLADERRLFYVALTRARRRLVVTAVDGADDDGE 737

Query: 676  SNQRTWYDMVYDSFHND----------ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
               R   ++                    V  ++               +          
Sbjct: 738  QPSRFLDELGVQVEKVRSRSVRPLTLVGLVAALRRLTVDPDASAAMRSAAAVRLAALAAA 797

Query: 726  REETIKQLMDEQKIPKKL-------FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            R+   + L+      +          S      + P  L+ S++       L   L    
Sbjct: 798  RDGAGRTLVPAAHPNRWWGLVDVTSSSVPVVAPDGPIALSGSSLSGLATCGLRWFLEHEA 857

Query: 779  TFN--------RGLIIHKLLQVIFT-------LPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                        G ++H L   + +            R + +      +++    +E   
Sbjct: 858  QAAEPASAAQGFGKVVHALADEVSSGRTPARMDALDARLDLVWRQLEFDSRWRSEQERSA 917

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ-NIFIFE 882
               ++ R L+             SEV  +  I    + + + G ID++ +     + + +
Sbjct: 918  AREALRRFLD--WHAARRREVVASEVRFACDIEVAGRVVRLRGFIDRVELDDDGRVHVVD 975

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            +KT    P   +       AQL  Y+  +++
Sbjct: 976  FKTGRAAPSRRDLQT---HAQLGSYQLAVRE 1003


>gi|238922029|ref|YP_002935543.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
 gi|238873701|gb|ACR73409.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium
           eligens ATCC 27750]
          Length = 717

 Score =  234 bits (596), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 98/559 (17%), Positives = 189/559 (33%), Gaps = 112/559 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K +  +Y + +  N  LDFEDLI  T  +L + +    +R +  ++  ++L DE QD ++
Sbjct: 191 KKVFYNYLKRQCDNYALDFEDLINFTLYILNRNED---VRIRWQEKCQYVLCDEYQDVNM 247

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q  ++  L+  +          + LF VGD+ Q+IY++ G++P+ ++            
Sbjct: 248 KQDMLLHILSGLY----------QNLFVVGDDDQNIYTWRGSDPEYMINF--------DK 289

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +      L  +FRST  I+     + S  +N       S     ++            
Sbjct: 290 THENLQDYSLTENFRSTPQIVNAAKSLISANQNRLEKQMISNRPDGNKPVF--------- 340

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                         +    +  IA TI + +           + 
Sbjct: 341 --------------------------NAADTEEKESLWIADTILDNVA----------KN 364

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++  D  +LVR    T  +           K+           +   I+ +++  R + S
Sbjct: 365 MKYSDHTILVRAASQTRSLEEAF----IKRKVPYKILSGAKFYESEEIRTVLSYMRMVYS 420

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKY-- 487
             D      + + P   F +  + K+         ++++ + K    G    ++VI+Y  
Sbjct: 421 LTDMDLLYTISR-PRRGFGKKSVEKLKNAAAQNNCSLFKALGKQIEDGDITQKNVIEYYN 479

Query: 488 -IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            I EL       +  D     L     R+          +D + E +      E+++   
Sbjct: 480 AISELHDTYVTYTCTDIVNKCLD-MGYRKALEQDIDQTRLDNVSELIRTITALEEDNQEK 538

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           ++ L   L  +     +     +N V++MT+HTAKGLE   VF+       F    ++  
Sbjct: 539 VE-LADLLSHFALFSAQDEDGEYNVVKVMTIHTAKGLEFDTVFVPGLVEGQFPSSRLRN- 596

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   EE  RLLYV MTRA + L +  
Sbjct: 597 ----------------------------------EDEYEEERRLLYVAMTRAKNMLYLST 622

Query: 667 HSNTSNEKKSNQRTWYDMV 685
           +        +    +   +
Sbjct: 623 YRKKDGRFAARPSAFLSDI 641


>gi|149184423|ref|ZP_01862741.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
 gi|148831743|gb|EDL50176.1| DNA and RNA helicase [Erythrobacter sp. SD-21]
          Length = 559

 Score =  234 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 103/642 (16%), Positives = 193/642 (30%), Gaps = 133/642 (20%)

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            ++ ++      +  +  Q   +IL+DE QDT+ +Q+  +R L +          + + +
Sbjct: 2   LNIFRQHHD---VLAQYQQRFKYILVDEYQDTNQVQYLWLRLLAQ----------TRKNI 48

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ QSIYS+ GAE   +L+ ++             ++I+L  ++RST  IL     
Sbjct: 49  CVVGDDDQSIYSWRGAEVANILKFEKDFP--------GAAVIKLEQNYRSTPQILAAASG 100

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           + +      G +                     LW ++ +            W +  +  
Sbjct: 101 LINANSERLGKT---------------------LWTELRAGEKVHVVG---VWDAPEE-- 134

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                    ARR+   I  +                  ++ +LVR +  T          
Sbjct: 135 ---------ARRVGEAIERLESEGAPLD----------EVAILVRAQYQTREFEDRF--- 172

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                ++      F   +   I+D +A  R I    DDL+F  +   P        +  +
Sbjct: 173 -IQIGLNYRIVGGFRFYERAEIRDALAYLRTIAQPADDLAFERIYNQPKRGLGAKTLEAM 231

Query: 457 -CTQRHETETVYEYIQKFANCGISKFQH------VIKYIHELIHIAQFCSPHDFFTLILG 509
               R   + +       A+      +       ++        +A+  +P +    +L 
Sbjct: 232 RRHARRTQKPLAAASLDLADSDELPARARNTLGGLLTQFVHWRELAEQVTPSELLRTVLV 291

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                         E    ++ L E        E         L   LE     +    +
Sbjct: 292 ESGYEDMLNKDRSAESAGRLENLTELARAMEEYET--------LTDFLEHVSLVMDNDRA 343

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +  +V IMT+H AKGLE   VFL      VF  +                         
Sbjct: 344 DDGEKVTIMTMHAAKGLEFNHVFLPGWEEGVFPSQR------------------------ 379

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                    I     ++ EE  RL YV +TRA  +  I   +N     +         + 
Sbjct: 380 --------AIDEGGLASLEEERRLAYVAITRAKRRCTIFHAANRRIYGQWTSSIPSRFI- 430

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                 E + +  + +        +   +       P     T +      + P      
Sbjct: 431 ------EELPEEHIESETTMSGGASLWRANWSENEDPFAHVSTARPDRSTARGPGW---- 480

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG-LIIH 787
            +  ++  Y  +P  I   GK+              G  + H
Sbjct: 481 -QRALSSGYDTSPKRIAETGKSAASFAAKPRTDIAIGARVFH 521


>gi|210615926|ref|ZP_03290849.1| hypothetical protein CLONEX_03068 [Clostridium nexile DSM 1787]
 gi|210150019|gb|EEA81028.1| hypothetical protein CLONEX_03068 [Clostridium nexile DSM 1787]
          Length = 610

 Score =  234 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 114/600 (19%), Positives = 206/600 (34%), Gaps = 120/600 (20%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
              D K+ L+    E   I++       ++S   S  + + +   YE+ +K+   +DF+D
Sbjct: 122 DIDDEKDFLQGIAGEIGNIKNNQIPLAEYESLNCSEEVFREIFEQYEKERKRLKKIDFDD 181

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +++   +L KK      I     ++  +ILIDE QD + +Q++VIR L            
Sbjct: 182 MLVLVYELFKK---RPDILSMWQRKFRYILIDEFQDINQVQYDVIRMLAA---------- 228

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               LF VGD+ QSIY F GA P  +L  K+               I L +++RST  I+
Sbjct: 229 PENNLFIVGDDDQSIYRFRGARPDIMLGFKKDYP--------DTKEILLDVNYRSTKAIV 280

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               +V     N       +T           Q  TV + E      +S+          
Sbjct: 281 NGAARVIRHNVNRYPKQIITTN---------EQGETVHIQEVRHPIEESK---------- 321

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                            +   I             KKR I + +I VL R   +      
Sbjct: 322 ----------------YVVSQIQE----------AKKRGIPSSEIAVLFRTNVEAR---- 351

Query: 392 LTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                  +Y +     +R   L +H   +DL    +  L      SF+ ++  P      
Sbjct: 352 ALAETFMEYNMPFRMKERMPNLYEHFIAQDLTTYLKMALGDRSRKSFLAIMNRPNRYIGR 411

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           D +        E  T+     +   C        I  +     I +  +P+     I   
Sbjct: 412 DSV--------EGTTISFESLRKFYCDKDWMLDRIDQLEVDFRILKNMAPYGAIQYI-RK 462

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS--YSSLQELISELEQYPPTIKRAH--- 565
             G  +F+  +       +++        E+ +  + +++E  + +E+Y   +KR     
Sbjct: 463 HIGYDEFLKEYAAFRKINMEDLKEVLREIEERAKAFRTIEEWFTHIEEYSEELKRQSQQK 522

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             +   +  MT+H +KGLE  +VF++     +  +K  +    +                
Sbjct: 523 ETDPEAITFMTMHGSKGLEFDLVFIIGANETITPYKKAETKEEVEEE------------- 569

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                                  R+ YV MTRA  +LII      + +  +  R   +++
Sbjct: 570 ----------------------RRMFYVAMTRARKKLIISYTKERNGKSMAQSRFVGELL 607


>gi|134291623|ref|YP_001115392.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Burkholderia
            vietnamiensis G4]
 gi|134134812|gb|ABO59137.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Burkholderia
            vietnamiensis G4]
          Length = 1264

 Score =  234 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 118/983 (12%), Positives = 263/983 (26%), Gaps = 140/983 (14%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                             ++  ++        + + L++       +     L  +     
Sbjct: 244  ARSLAQLKAPWHAWPDQMANVLDAARDDGHFRPRNLRK----GDCDRWIDALRRWAGDSS 299

Query: 78   FTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                        +    +                  ++                    A+
Sbjct: 300  SEEPSLMSGWEKLTPDGLANACEPGAPVPAHPGFLALETLRVELAALPTAHAALLSHAAQ 359

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            ++ A +   + +   + F+DL+   +  L+  +    +   I ++    LIDE QDT  +
Sbjct: 360  WVAARFAAEQARRAQMGFDDLLTRLDAALRGPN-GERLADVIRKQFPVALIDEFQDTDPV 418

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+ +  ++            + R L  +GD KQ+IY+F GA+    L  +R         
Sbjct: 419  QYRIFDAVYRADTA-----DAWRALILIGDPKQAIYAFRGADIHTYLAARR--------- 464

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 +  L  +FRS+  ++   +  F++ E   G                  V      
Sbjct: 465  SCDGRLHTLAKNFRSSHAMVDATNHCFAVAEARAGEGAFLFRRSGDNPVPFSTVSAQGRA 524

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLP--QESSASILARRIAYTISNMIGTDTIFSNGKK- 368
            E  V    +             D  P  + +    +A   A  +  ++        G   
Sbjct: 525  EVFVVNGAAPPALTAWWLPPADDGKPTTKTAYLESIAASCATEMVRLLNLGQRGDTGFAG 584

Query: 369  ----RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                + ++  DI VLV  R +   I             SV  +DR  +       +L   
Sbjct: 585  KDGLQPLRPADIAVLVNNRGEADAIRGALAA---RNVRSVYLSDRSSVFQCAQAAELQHW 641

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
                   +D       L +        ++      R  +E  +E            ++  
Sbjct: 642  LAACADPDDGRLVRTALSTATLGLGWAELD----ARFGSEIAWEACVLQFRGYHECWRR- 696

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAK-KGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQN 542
                  L  + +F +       +LG    GRQ           +  L E L         
Sbjct: 697  ---QGVLPMLRRFLNDFGVPARLLGTHADGRQGVPGGERILTDLLHLAELLQQASAM--- 750

Query: 543  SYSSLQELISEL----------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                L   I  L          +    T++    ++ + V+I+T+H +KGLE P+VFL  
Sbjct: 751  -IDGLHGQIRYLADQRAASEDSDAGSDTVQTRLESDGDLVKIVTIHKSKGLEYPLVFLPF 809

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
              +   +      +      ++               +     ++ + +    E  R LY
Sbjct: 810  ACAHRPAKATDLPLKWHDENDELRISL----------DGGRGALEQVDRERLGEDLRKLY 859

Query: 653  VGMTRASDQLIICKHSNT-----------SNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            V +TRA     I                    +        D++  +F   E +  I   
Sbjct: 860  VALTRARHATWIGMAPLEALERTAIGYLIGGTQPLAGGGLEDLLQTAFGACENIAVIPAP 919

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI------PKKLFSPIKNDINEPY 755
                +      + +                 +     +       ++  +P     +   
Sbjct: 920  EPGGERYTPRIDEARRGAARQSARVVREPWWIASYSSLRTAGKNHREHAAPDTPGEDGFN 979

Query: 756  ILNPSTIDTKGKTNLESL-------------LSDNQTFNRGLIIHKLLQVIFTLP----E 798
              + +  D   +   E+                  +   +G  +H LL+           
Sbjct: 980  EASAAERDVDQQPAAETPRHAPMPDANASTLHDFPRGSEQGSFLHDLLEWAAAHGFARIA 1039

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------------MMTTAMSCD 844
              R+        + +          L   + +++  P               +    +  
Sbjct: 1040 ADREALREVVARRCSVRGWQSWIDPLTDLVMQIVSTPLVLRGGHGIEPTSIELAALATAV 1099

Query: 845  SYSEVSVSG-----------------------KINCPKKDIIISGRIDQISISQQNIFIF 881
               E   +                         ++    + ++ G +D +   +   ++ 
Sbjct: 1100 GEMEFWFAAKHVDTAALDRLVCARTLDGAERPPLDPATLNGMLKGFMDLVFEHEGRYYVA 1159

Query: 882  EYKTHHHVPQEIEHIPYTHIAQL 904
            +YK++     +  +      AQ+
Sbjct: 1160 DYKSNWLGADDTGYTAEKIRAQM 1182


>gi|330959506|gb|EGH59766.1| putative UvrD helicase [Pseudomonas syringae pv. maculicola str.
            ES4326]
          Length = 1144

 Score =  234 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 149/968 (15%), Positives = 305/968 (31%), Gaps = 118/968 (12%)

Query: 7    LSLNESYELIYKDLWPLPY--FQVSDINKYVSLSM-ETGNPTILKKAQTLQQASQTQCIE 63
            +++ E+   +              SD+ + ++     +G     + A  +  A  +    
Sbjct: 255  VAMQEAVSSVVLQAAQQAISMIPGSDLERAMACLKSASGALEGFEWAADMPAAIASANTL 314

Query: 64   ERFSLLSSFFLTQKFTPQ-----------KNIITQEINKKSPDLK-----EKLKKSQDEF 107
            E F   +S+ LT   T +           K+  T E+N    DLK     ++  ++    
Sbjct: 315  EYFGQFASYMLTSTGTLRAKVTVANGFPAKHFCTVEMNGILADLKVNPQSQEFTQALATL 374

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
              + +     +  K       + +YL A+   A +    LDF ++       L   +   
Sbjct: 375  STLPELQYPARSAKMVEHFTVILRYLLANLTLAMEGTNSLDFPEIAQRAIQALGAGETVG 434

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
                + D  I HI++DE QDT+  Q+++++ L E++       S  R++  VGD  QSIY
Sbjct: 435  DALLEED-RILHIMVDEFQDTNQAQYDLLKLLVENW-----DPSDNRSIAYVGDGFQSIY 488

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F GA+                   ++  I+ L ++FRS   ++   ++ ++        
Sbjct: 489  LFRGADLNLFTSVVE----AKAFGPKQMDILRLTVNFRSLPGVVEWNNETYAQV-----F 539

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
             + +   +   + R G  G V +      Q                            A 
Sbjct: 540  KDSAYEFVPSVAFRKGDGG-VSVHPVATGQ-------------------------IGEAE 573

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
             +   +   +  D             K I +LVR R     I  + +    D  I V G 
Sbjct: 574  EVTKVVQEALAKDPS-----------KSIAILVRGRSHLKHILPMLK----DAGIEVRGK 618

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            D   + +  A+ ++++L R +    D  +++ ++++     S  D   +    +  E   
Sbjct: 619  DIDPIGEAAAVSEVISLIRSLWHSADRSAWIALMRAAFVGLSWADCLLVARGHNVIENAL 678

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
                  A         V++ +  L  + +     +    +  A        +    E+ D
Sbjct: 679  RDDAVQAQLTSDGLIRVLRLLDVLDGVKRSSRGSELGWAVKSAWIALGGPATVNSGEMDD 738

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            V   F   T   E    +  Q     +++         S     V +MT H +KGLE   
Sbjct: 739  VETIFKLLTTHTESGDLTDPQAFFRAIDKAY------ASPKAGAVTVMTCHGSKGLEYDT 792

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V +                             +    + +  + +   +  + +    + 
Sbjct: 793  VLIPGLNKGGAKDDAPLFYFRQMDGVFSVVPNLGDLDATTPESRLFKFVGRMVRKDISDE 852

Query: 648  N-RLLYVGMTRASD--QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
              R  YVG TRA +   L +C     + E ++ +                     L ++I
Sbjct: 853  VCRAAYVGTTRAKEQCHLFVCVDRFPAAEGEAQK-------EKEIKPAAGSLAECLWSAI 905

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                           +       +       +  +PK +F P  ++   P      T + 
Sbjct: 906  GAQVKAVAPAFPIVADTDSGVPSKARLAPGYKVDLPKTVFVPAASNDQVP------TENE 959

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK------NAKLWPA 818
                  E   SD +    G++ H  ++ I                 +        + +PA
Sbjct: 960  LNDELREEEGSDYRAKTIGIVYHWFVEQIGKQGIELWDETRVRTKAQSVASMLRREGFPA 1019

Query: 819  KEYKNLLLSITRLL----ENPMMTTAM--SCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
             E    +  I RLL     +      +     S  EV VS      +    +   +D+  
Sbjct: 1020 AEVPQAVSRILRLLSNTVNSIHGQWILKKRPGSGHEVQVSA----YRNGRWVHRFLDRPF 1075

Query: 873  ISQQNIFIFEYKT-----HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
                  +I +YKT            +      +  ++  YE  + D+     +  +L + 
Sbjct: 1076 EDGGFYWISDYKTPDCPEGMSEDAFVAREVERYRPKMDEYESAVIDAGITLPVRKVLYFP 1135

Query: 928  SEPKVFII 935
            +  ++  +
Sbjct: 1136 AFDRLAEV 1143


>gi|220918612|ref|YP_002493916.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956466|gb|ACL66850.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 671

 Score =  234 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 107/674 (15%), Positives = 198/674 (29%), Gaps = 119/674 (17%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L    Q           +      +    K  + +           ++            
Sbjct: 91  LWLLQQEHEAAGLPRRFAICDAGDQLALVKRCMREVSVDDRKFDAHRVLSLLSRAKNAGK 150

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +          +A  +   YE+A +    +DF+DLI     +L        +R +
Sbjct: 151 KRIVPREAGQGDDYDLVAAEVYPRYEKALRAMRSVDFDDLIARPVAMLAHDPA---LRAR 207

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   ++L+DE QDT+  Q E+++ L  +           R + AVGD+ Q+IY + GA
Sbjct: 208 CQERFRYLLVDEYQDTNAAQLELLKLLAGE----------RRNVCAVGDDDQAIYGWRGA 257

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E K +LR +R               + L  ++RST  IL   + V +     +  +    
Sbjct: 258 EVKNILRFERHFP--------GAKEVRLEQNYRSTGHILACANAVIAKNAARKAKAL--- 306

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                 +   G+   V                               S     AR +A  
Sbjct: 307 ----FTAGEAGEPVRV----------------------------VAMSEEEDEARFVAEE 334

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I+   G                   VL R    +       R       +    +     
Sbjct: 335 IARQRGEGRP----------WSHFAVLFRLNALSRPFEEAFRE----GSMPYKVHGGPAF 380

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471
            D   ++DL+A  +  +  EDD+S   ++  P     +  + ++          + E ++
Sbjct: 381 FDRSEVRDLLAYLKLCVQPEDDVSLSRVVNVPPRGIGDTSMERVHDWAIPRKLHLLEAMR 440

Query: 472 KFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----R 520
           + A           K    +  +       +     +    ++          +      
Sbjct: 441 RAAEIPDLPRGAAEKIGAFVALVDRFQARFREGPVSEAARALVAEVDLFSHVRAGVQSLE 500

Query: 521 FGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            G+  +D L+  L       ++ +  SL   +  L            +    + +MT+H 
Sbjct: 501 AGSRRVDALEGLLRSLDGYVQRTARPSLATWLQRLALDSREE--EDPSGEGGITLMTLHA 558

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFLV                                                
Sbjct: 559 AKGLEFPVVFLVGVEEDYLP----------------------------------CAGIQG 584

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +    +E  RL YVG+TRA ++L + + +  S   K   RT    + D            
Sbjct: 585 EARDLDEERRLAYVGITRARERLYLTRVAARSKRGKLLPRTPSRFLDDLPPAAHEKVDPA 644

Query: 700 LTNSINKDEWIAYE 713
              +  +D     E
Sbjct: 645 ALAAPPQDVAAHTE 658


>gi|309812345|ref|ZP_07706100.1| exodeoxyribonuclease V, beta subunit [Dermacoccus sp. Ellin185]
 gi|308433650|gb|EFP57527.1| exodeoxyribonuclease V, beta subunit [Dermacoccus sp. Ellin185]
          Length = 1127

 Score =  234 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 134/1052 (12%), Positives = 280/1052 (26%), Gaps = 227/1052 (21%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE--ERFSL 68
            E  E +   L   P+     +   +          + ++   L +A  +           
Sbjct: 86   EQLERVLTRLRQAPHDDDGVLVAAL---RSDDPGVLAERCDRLARALASFDSALIATIHQ 142

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKL-------KKSQDEFIKIRDRFNT----- 116
                 L        +     + + +  L++++       +++QD    +           
Sbjct: 143  FCHDVLKGLGVAGDSDSFATLVEDTTGLRDEVIDDLYVARRAQDPSFDLSHERARFIGHC 202

Query: 117  ----------YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                           S  A +  A+ L   Y   K++  +L+++DL+++    L+     
Sbjct: 203  VLTNTGAALDAPADDSQRAVIDFAEALRNEYARRKRRAGILEYDDLLVDLRTALRATPSI 262

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
            A  R ++    + +L+DE QDT  +QWEV ++   +           R+L  VGD KQ+I
Sbjct: 263  A--RERMRARWSVVLVDEFQDTDPVQWEVFQTAFSEA---------GRSLILVGDPKQAI 311

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F G +    LR  +                 LP ++RS   ++  + ++      + G
Sbjct: 312  YGFRGGDVHTYLRASQ----------TAEHRSTLPTNYRSDGPLVDALGRLMGNVTLSPG 361

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +     T  R  S  +G    +++                       D LP   + S +A
Sbjct: 362  IVAHPVTADRETSRLVGDAAPIEMRWV------------------NGDPLPAAGARSAVA 403

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A   S ++ + T F++     +    + VL R       +    R       I  V 
Sbjct: 404  HDLAVRASELLASGTTFADA---PLAPHHMAVLARTHAQLLQVREQLRA----AGIPAVM 456

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                 +    A    + L   +              +PL  +    I  + T     E+ 
Sbjct: 457  MSGDSVLRSSAGAWWLELLLALEQPHRAQRVRAACLTPLIGWDVARIDALETA-DADESA 515

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
                   A         V+  +                  +L    G +          I
Sbjct: 516  ELVHALAAQFDEGGIPAVMDALRA----------RGMLERLLARVGGERDVTD------I 559

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-----SANHNEVRIMTVHTAK 581
            +   + L           ++L   + E       +          ++   V + T+H +K
Sbjct: 560  EHCAQLLTERQLATGGGIAALVAWVQEQSAADAKVTADARLMRLDSDAQAVTLSTIHASK 619

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ PVVF     ++                   P I           +          +
Sbjct: 620  GLQYPVVFAPTLWNR------------WDKDRSVPDIVYTEAGRVVSFDPGVINASRSHE 667

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK-------------------------- 675
                E  RL YV MTRA  ++++       +  K                          
Sbjct: 668  EASGEEMRLAYVAMTRAQSKVVLWWAPTARSTSKSALHRLLFGQAADPASLGELLTRRTS 727

Query: 676  ---------------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                                 ++++     +        +  +      +A      +  
Sbjct: 728  DKGSEVITTTEQNGLPRGDKLFEILQTWAEHRAFTLTEVVPGAKPTPVHVAVSSDEMNLS 787

Query: 721  NTPLEREETIKQLMDEQKI----------------PKKLFSPIKNDINEPYILNPSTIDT 764
                   +T  +      +                P  + + +  D++      PS  D 
Sbjct: 788  RFDPRLVDTSWRRTSYSALSAAGERADELAGVVSEPDAVGAQLDPDVDLALPQAPSAPDV 847

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
             G   L  +         G ++H +L+      +            +  +     +   L
Sbjct: 848  PGADALSPMHDQPLGATFGSLVHGVLEEADFQADDLDAELHRHIVEQQLRWPADVDVDAL 907

Query: 825  LLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKKDI-------------- 862
            + ++  +L  P         +      D  +E+     +                     
Sbjct: 908  VEALRGVLATPFGPLADDVCLRRIAMSDRIAEMDFEIPLGGGDTPHARATLRAFADVLRR 967

Query: 863  ---------------------------IISGRIDQISISQQNIFIFEYKTHHHVPQE--- 892
                                        ++G ID         F+ +YKT+     +   
Sbjct: 968  HLPEDDPLRPYADHLEASLLGEETLRGYLTGSIDLTFRHGGRYFVVDYKTNRLGDPDAPL 1027

Query: 893  ------IEHIPYT-----HIAQLSIYEKILKD 913
                   E +        +  Q  +Y  +L  
Sbjct: 1028 TLSAYGPEALAAAMNHSSYPLQAILYAVVLHR 1059


>gi|323359568|ref|YP_004225964.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037]
 gi|323275939|dbj|BAJ76084.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037]
          Length = 1095

 Score =  234 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 129/988 (13%), Positives = 276/988 (27%), Gaps = 144/988 (14%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
             D     +      +   ++  E+    ++++        + +  +E    L    L   
Sbjct: 166  ADSLVREHGLRIGRDAESAILSESAAWLLMRRVVFASDDPRLEERQESPRTLIDAALRIA 225

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
                 N++  E     PD   ++   +         +       + +++L+L   L A Y
Sbjct: 226  RDGVDNLVDLERLAAFPDEFGRIV-ERPSTSARVTVYKDVADAAARVSALSLLATLAAAY 284

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            +  K +  V+DF D +     ++++      +  ++      +L+DE QDTS++Q +++ 
Sbjct: 285  DREKIRLGVMDFADQVAGALRIVREHPA---VVAELRARYRVVLLDEYQDTSVVQTDLLS 341

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            +L                + AVGD  Q+IY++ GA    +                    
Sbjct: 342  TLFG-----------GTGVMAVGDPHQAIYAWRGASAGNLGGFPAAFS-----PEGGCRH 385

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
              L  S+R++A +L V + V +   +   ++  + T+                       
Sbjct: 386  FSLLTSWRNSARVLDVANAVLAPLADRSPIAVGALTSRP--------------------- 424

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                     +           ++ A  +A   A   +         +             
Sbjct: 425  ------GAPDGLVEIVFERDLDTEADRVASWFAGIRAARQAEGRATTG-----------A 467

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VL R +K                 I         L     + D+++  R I   E   + 
Sbjct: 468  VLFRSKKHMVRFGDAL----GRRGIPHRILGLGGLLTTPEVVDVVSALRVISDPEAGSAL 523

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV------------- 484
            + +L  P +     D+  +        T    +Q      + + +               
Sbjct: 524  IRLLSGPRWAVGLADLRALAQLARRLATHDVALQPLEAEVVDRLRATPGADRASLVDALD 583

Query: 485  -------------------IKYIHEL------IHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                                  + E       +  +      +   LI    +   +  +
Sbjct: 584  FLARQNDDHGWLADITPAGRARLREAGTVFAGLRRSIGAPIPELIRLIEAELRLDIELAA 643

Query: 520  RFGNE----VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
                         L  F++         E  S +SL   +   EQ      R      + 
Sbjct: 644  NESRGPARIASAQLRAFVDEIRGFLAADESGSVASLLAWLDHAEQADEFAPRTEPPEDDV 703

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSH-----KHIKKMHIMPSLNDDPGIPIWIPQS- 625
            V+++T+H +KGLE   V +V   +          K      I+PS        +      
Sbjct: 704  VQLLTIHGSKGLEWDAVAVVRLVTDELPSLPRDTKGWLGFGILPSDFRGDAAWLPTLGWR 763

Query: 626  -----KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                 +     + D +   +    +E  RL YV  TRA D L++   + +  +K      
Sbjct: 764  GAETQQELKAAIDDFVVANRARQLDEDRRLAYVAFTRARDHLLLSGSTWSGTKKPRRPSV 823

Query: 681  WYDMVYDS----------------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
            + D   ++                         +    S       A        +  P 
Sbjct: 824  FLDEAAEALGSELVVGEAGEDPYDGERRLLHWPLDPLGSRRTAVTAAAAEVVAARDAAPA 883

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID---TKGKTNLESLLSDNQTFN 781
            E +  +  L+ E+    +                    D      +          +   
Sbjct: 884  EPDPDLALLLAERAARLQPVHAPAPTRIPASRFKDYVADYGAAVDEVRRPMPERPYRQTR 943

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
             G + H  ++    L               +     A +   L   +    E        
Sbjct: 944  LGTLFHAWVEQRSGLVGAGVGLDDGGLWEDDDFGASAADAAEL-QRLRDCFERSEWAALQ 1002

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
              +  +E+    +     ++ ++  ++D +        I ++KT    P   E      +
Sbjct: 1003 PIEVETEIDFVTR-RLDGREHVVICKLDAVYRRGDRYEIVDWKTGK-PPATAEERRSR-M 1059

Query: 902  AQLSIYEKILKDSY--PNKSLVCLLIYV 927
             QL +Y +     +  P +S+   L YV
Sbjct: 1060 VQLELYREAYHAKHGVPLESIDVALFYV 1087


>gi|261416175|ref|YP_003249858.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372631|gb|ACX75376.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 1094

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 137/901 (15%), Positives = 286/901 (31%), Gaps = 127/901 (14%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    + N+  ++ N+    L   +  S       +   +   + K         +    
Sbjct: 256  RDKKLKTNLFKKDGNEA---LFNSVYDSLGRVYSSKKVRDL--VLKYINLIFGYVEKARE 310

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             +++ K+++ ++DF D+     +LL K +V   I         ++ +DE QD+S +Q ++
Sbjct: 311  EFKKFKEEHHLIDFVDMETRFLELLDKDEVQQDI----CNTYKYVFVDEFQDSSPLQVKI 366

Query: 196  IRSL--------TEDFFVGKNTHSSPRTL-----FAVGDEKQSIYSFHGAEPKRVLREKR 242
               L         +DF V   T              VGD KQ+IY F GA+         
Sbjct: 367  FDKLSEIVGRDECDDFVVTIGTGKDTNEFHIHNSIWVGDFKQAIYGFRGADTDLTKAVAD 426

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
            I  ++  +  ++F I  L  SFRS  +I+   +++F        L ++    I HR    
Sbjct: 427  IIAQKQISLPKQFKIHTLKKSFRSLENIVDFTNELFVPAFE-GILKKEEVELIAHRP--- 482

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                                    + W    D   +E     LA +IA  + N       
Sbjct: 483  ----------------QDNAVKSLKCWK--VDGKKEEERLKNLALQIAKRLKN------- 517

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                     +  D  VL R+      ++   + L     + V    R +  D    +D +
Sbjct: 518  -------GEKPSDYAVLARRGAPLNKLSDALKTL----NVPVC---RTLEFDEK--RDEL 561

Query: 423  ALGRFILS--QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-YIQKFANCGIS 479
            AL   +++    D  ++   + + L     D    I  +    ++  +           S
Sbjct: 562  ALISALMNLVTNDFDNYSRAVVAFLTQKGFDAGRIIDAKLEFDKSYQDNKNCPKYLSDNS 621

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
                  +                    +     GR    +   +E        +  +   
Sbjct: 622  ILAKFAERRDFYRMQTIHNLVESLIVDLDLYSVGRGWENAVGTDECFA---ALIEASYDY 678

Query: 540  EQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            E+         ++   +              + + + V + T H +KGLE   V L+D  
Sbjct: 679  EERCSQIGISPTISGYVDY-----CKDNAKSAGSKDGVVLSTFHHSKGLEWKKVILLDLD 733

Query: 595  SQVFSHKHIKKMHIM-----PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ----- 644
              VF      K  ++       +                 N+ +      +   +     
Sbjct: 734  EDVFDENKRIKYGVLGVHNYHDVAPSESNLYPPMIINLMPNLFAGNTNVAEDMAEKIKNS 793

Query: 645  -----------EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                        E  RLLYV +TRA D+LI+        E      +       +  + E
Sbjct: 794  GFFKSTCQSFISETIRLLYVAITRAKDELILT----LDEENPLQVFSCLKCHIQTGADYE 849

Query: 694  RVKKIKLTNSINKDEWIAYEW---STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              K++ L +  N+D     ++   +    E    + E+  K +  + +  +      +  
Sbjct: 850  NGKEVSLFSFNNQDTNERLKFLFENDKLSEGDSYQVEKPEKLVFKKNEKIETANRDQQPS 909

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
              +P     + I     + +++   +      G  IH +  V+   P  +    I     
Sbjct: 910  KVKPSRKVTANIVFDSGSRIKANPDEMD--KFGTCIHNIFCVLEKSPTVEMVEKIIKNHQ 967

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
                L   ++      ++ + L            +Y E+     +       I +G +D 
Sbjct: 968  METALPQPEDVLKAWQNLEKFLTEKYGAKV---ATYHELPFRHML----DGQIFNGEMDL 1020

Query: 871  ISISQQNIFIFEYKT-----HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            +  + + + + ++K+     +  V  + +H    +  Q   Y+  LK +   K+++  L+
Sbjct: 1021 VWETDKGVVLVDFKSYPGNNNDVVAVDNDHYAGKYAGQFECYDCALKAA--GKNVLARLV 1078

Query: 926  Y 926
            Y
Sbjct: 1079 Y 1079


>gi|2618592|dbj|BAA23380.1| UvrD [Thermus thermophilus]
          Length = 692

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 116/690 (16%), Positives = 202/690 (29%), Gaps = 138/690 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E + + L P             +L +       +          +         
Sbjct: 65  AAEEMRERL-RGLVPGAGEVWVSTFHAAALRILRVYGERVGLRPGFVVYDEDDQTALLKE 123

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           +L    L+ +  P K ++ +  N+    LK  L +  + +  +                 
Sbjct: 124 VLKELALSARPGPIKALLDRAKNRGV-GLKALLGELPEYYAGLSRGR------------- 169

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+EA K    LDF D+++   +  +        R    Q    I +DE QD
Sbjct: 170 --LGDVLVRYQEALKAQGALDFGDILLYALEAFRGGRGGPQARA---QRARFIHVDEYQD 224

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS +Q+   R L  +             L AVGD  Q IYSF  A+ K +L   R     
Sbjct: 225 TSPVQYRFTRLLAGE----------EANLMAVGDPDQGIYSFRAADIKNILDFTRDYP-- 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +  +  L  ++RST  IL   + V          +                   
Sbjct: 273 ------EARVYRLEENYRSTEAILRFANAVIVKNALRLEKALRPVKR------------- 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            +        D+  +       AR +A  I+ +           
Sbjct: 314 ---------------GGEPVRLYRAEDAREE-------ARFVAEEIARL----------- 340

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                     VL R    + L+            I           +   +KDL+A  R 
Sbjct: 341 --GPPWDRYAVLYRTNAQSRLLEQAL----AGRGIPARVVGGVGFFERAEVKDLLAYARL 394

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFA--NCGISKFQHV 484
            L+  D +S   +L +P          ++    + +    +E +++ A         +H 
Sbjct: 395 ALNPLDAVSLKRVLNTPPRGIGPATWARVQLLAQEKGLPPWEALKEAARTFSRPEPLRHF 454

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQ 541
           +  + EL  +  F     FF  +L A                + ++ ++E L      E 
Sbjct: 455 VALVEELQDLV-FGPAEAFFRHLLEATDYPAYLREAYPEDAEDRLENVEELLRAAKEAE- 512

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                LQ+ +  +           +     V +MT+H AKGLE PVVFLV     +  H+
Sbjct: 513 ----DLQDFLDRVAL--TAKAEEPAEAEGRVALMTLHNAKGLEFPVVFLVGVEEGLLPHR 566

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +                                          EE  RL YVG+TRA ++
Sbjct: 567 NSVSTL----------------------------------EGLEEERRLFYVGITRAQER 592

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           L +          +         + +    
Sbjct: 593 LYLSHAEEREVYGRREPARPSRFLEEVEEG 622


>gi|304382260|ref|ZP_07364767.1| ATP-dependent helicase [Prevotella marshii DSM 16973]
 gi|304336617|gb|EFM02846.1| ATP-dependent helicase [Prevotella marshii DSM 16973]
          Length = 1088

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 118/864 (13%), Positives = 268/864 (31%), Gaps = 88/864 (10%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT--------YKMFKSTLASLTLAKYLN 134
              + +     +P +++ ++      +   +             ++    L  L L   + 
Sbjct: 301  KWVRKSDKNTAPLVRDAVESVLHALLIETEAERARQWSLYQSAELTLRHLDQLRLLGSIE 360

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
                    +       D     + L+K  D S +I  KI   + HI+IDE QDTS +QW+
Sbjct: 361  QQMRNINSELNRFMLSDTQTFLHRLVKDTD-SPFIFEKIGTRLEHIMIDEFQDTSTVQWQ 419

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
              + L  +       +        VGD KQSIY +   + + +   +   ++        
Sbjct: 420  NFKILLRECMGHGKKN------LIVGDVKQSIYRWRSGDWRLLNNIETEFEQSRAEM--- 470

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              I+ L  ++RS   I+           N    +  +        +        QL +  
Sbjct: 471  -EILPLDTNYRSQRRII---------AFNNHFFAAAAARETERLRAESDAPEIAQLGKAY 520

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                      + ++     + LP++     + RR+   + + +             I   
Sbjct: 521  ADVEQQIPEKRADNGYVRIELLPEDDYQQEVLRRMKDMLQSFVALG----------ISLS 570

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
             I +LVR  +D P+I         D    +V ++ F L   LA++ ++   + +  ++D 
Sbjct: 571  RIAILVRWNRDIPVIADFFMRECPDM--PLVSDEAFRLDASLAVQIMINALQVLTHEQDL 628

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
            L+   ++K+            +  +  +++ + +     A       +H  + +      
Sbjct: 629  LAKASLVKAYRKGV-------LGHKNTDSKLLADKDALDACLPAEFTEHTYELL------ 675

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                  +D    +                E    +  F +      + + + +   + E 
Sbjct: 676  --SMPFYDLVERLYDIFSL------DTLPEQGAYVCAFYDRLNDYLKENTADIDAFLREW 727

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS-HKHIKKMHIMPSLN 613
            +              + +R++++H +KGLE   V +     Q+      I     +   N
Sbjct: 728  DNSLHEYTIQSDVA-DGIRLISIHKSKGLEYDHVIIPFCDWQLEKLGDTIWCRPAVAPFN 786

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            + P +PI     + R  I      H       +   LLYV  TRAS  L++       N 
Sbjct: 787  ELPIVPIDYYPKRMRGTIYEQDYIHEHLQNTVDNLNLLYVAFTRASHNLVVFGKRKGDNT 846

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            + +       ++ D                   ++  +  +      N  + ++ + +  
Sbjct: 847  RSA-------VIKDVIETLPNSLDGATVTESGGEKTASIVFEYG---NIYVPKQTSSRDT 896

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
             +    P     P             S          +     +Q    G ++H+L   I
Sbjct: 897  QNVFLQPVTACHPSMKTFRSSIAFRQSNPSKDFIETDKDENPQSQYIKMGNVLHRLFSAI 956

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                    +  +  +             + L  ++     NP++    S     E+    
Sbjct: 957  --RTADDIEPTLRDFEFNGILYDEELTAEELRATLREKFSNPVVADWFSDK--WEIFNEC 1012

Query: 854  KINCPKK--DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
             I          +  R D++        + ++K     P         +  Q+  Y ++L
Sbjct: 1013 TILSVDAKTGEAVKHRPDRVMQHDGETLVVDFKFGRERPA--------YHEQVRSYMRLL 1064

Query: 912  KDSYPNKSLVCLLIYVSEPKVFII 935
            ++   N+ +   +  V   ++  +
Sbjct: 1065 EEM-GNRHVKGFIWLVFSNQIIEV 1087


>gi|225027668|ref|ZP_03716860.1| hypothetical protein EUBHAL_01927 [Eubacterium hallii DSM 3353]
 gi|224954982|gb|EEG36191.1| hypothetical protein EUBHAL_01927 [Eubacterium hallii DSM 3353]
          Length = 667

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 108/665 (16%), Positives = 215/665 (32%), Gaps = 141/665 (21%)

Query: 47  LKKAQTLQQASQTQCIEE----RFSLLSSFFL---------TQKFTPQKNIITQEINKKS 93
              A+ +++        E     F    S F          T     ++++  + I + +
Sbjct: 59  RAAAEEMRKRFFAFDGMENAPVTFGTFHSIFFMILRYAYRYTAGNIIREDVKRRYIKEIT 118

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-------TLAKYLNAHYEEAKKKNCV 146
            +++ +++  ++    I +  +  K    +L+          L   +   YE   ++  +
Sbjct: 119 ENMELEIEDEKEFLSGIINEISYVKGEMMSLSYYHSSNCSDELFAQIYEGYERRLREENL 178

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++   +LLK+      I     Q+  +ILIDE QD + +Q+E++R L       
Sbjct: 179 IDFDDMLVFCYELLKE---RKDILAMWQQKFQYILIDEFQDINKVQYEIVRMLAG----- 230

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    LF VGD+ QSIY F GA P+ +L  ++               + L  ++R 
Sbjct: 231 -----KGDHLFIVGDDDQSIYRFRGARPEIMLGFEKDYP--------DAKKVILNTNYRC 277

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           +A+I+   + + S        +  +    +                              
Sbjct: 278 SAEIVDSAEHLISHNTKRFPKNMQAARGKK----------------------------VP 309

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
            ++    D+  + +        I   I                 I  +++ V+ R     
Sbjct: 310 ITFRYLKDAGEECTD-------ILKGIRFYHKKG----------IPLEEMAVIFRTNTQP 352

Query: 387 PLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                L      +Y I     D    + DH   ++++   +  +  +D   F+ ++  P 
Sbjct: 353 R----LLVGRLMEYNIPFQMRDVIPNIFDHWIARNILTYIKIAMGNKDRKLFLQIMNRPK 408

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
              S   +        +         K    G       I  +   + + +   P+    
Sbjct: 409 RYISRSMLTDPQVDLKK--------LKQETFGKKWLYEKIDKLEMDLCLLRKMEPYAAIQ 460

Query: 506 LILGAKKGRQQFISRFGNEVI--DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
            I                  +  D L+E LN         Y S +E  S ++ Y   +++
Sbjct: 461 YIRNGIGYEDYMNEYAQFRRMNPDDLEEVLNQIQE-SAKEYHSFEEWFSYIDSYGEELEK 519

Query: 564 AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              A      + V + T+H++KGLE  VVF++D       H                   
Sbjct: 520 QMEAGRQQQKSGVTLTTMHSSKGLEYEVVFVMDINEGTTPH------------------- 560

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                            K +K +  EE  RL YV +TRA   L +        +     R
Sbjct: 561 ----------------KKAVKDADLEEERRLFYVAVTRAKTYLFLYSLKELYQKDAQISR 604

Query: 680 TWYDM 684
              ++
Sbjct: 605 YIGEL 609


>gi|313204216|ref|YP_004042873.1| uvrd/rep helicase [Paludibacter propionicigenes WB4]
 gi|312443532|gb|ADQ79888.1| UvrD/REP helicase [Paludibacter propionicigenes WB4]
          Length = 1086

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 140/887 (15%), Positives = 296/887 (33%), Gaps = 90/887 (10%)

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEK-----LKKSQDEFIKIRD----RFNTYKMFK 121
            S   T       N  T+   ++     E      L K   + +++ +     +N+  M  
Sbjct: 268  SARFTGFADDVTNCYTKSKPQEVKSAIESAYSNGLGKCFQQIVELLNVGIVEYNSALMVL 327

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEIN 178
              + +L +   L    ++   +   +    LI ++N LL        + ++  K    I+
Sbjct: 328  KHINTLGILSDLAVQIKKLTDEQNTM----LISDSNMLLNKIIDNSDTPFVYEKTGITID 383

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + +IDE QDTS +QW+    L  +       +        VGD KQSIY +  ++ K + 
Sbjct: 384  NFMIDEFQDTSTLQWKNFHPLMANSLSAGKFN------LVVGDVKQSIYRWRNSDWKLLD 437

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN--AQGLSEDSTTTIR 296
                  Q       ++     L  ++RS  +I+   +  F    +     L+E+    + 
Sbjct: 438  E-----QILNDFRPEQIHEENLETNWRSDKNIIDFNNSFFRRAASLLQSKLNENLEAVLP 492

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
               S       ++     + Q  S          ++ D      S    A   A ++  +
Sbjct: 493  VYPSLEALKHKIEHAYANIHQQTSPKAGTGSVQINFID------SDENEAGWKAESLQRL 546

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK------ISVVGNDRF 410
                 +  + + R  +  DI +LVRK  +   +       K   +        ++GN+  
Sbjct: 547  ---PAMLEDLQSRGYRPADICILVRKNDEEQQVIHRLLSYKTTAEAKPGFCYDIMGNEGL 603

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
            ++    +++ ++ + +  ++  D +    +                   + E E +    
Sbjct: 604  LIGAAASVRFVLGILQLFVNPADSIQRTIVNYEYARG---------RQHKSENEALNACF 654

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                +             +E +   Q  S  D    I+         I  + NE +  + 
Sbjct: 655  VTENSNENILSALFSDEENERLKQVQHSSLFDMVEQIISLFG-----IGSWHNEAV-FVQ 708

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             F +   R      + L   ++  ++       +   N N +RIMTVH +KGL+  VV +
Sbjct: 709  AFQDVVFRYTTGKTADLNSFLTWWKKNGGKQCISTPDNQNAMRIMTVHKSKGLDFKVVIM 768

Query: 591  VDTGSQVFSHKHIKKM-HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                  + S            +  ++  +      SK   +I ++     +     +   
Sbjct: 769  PFCDWDLDSRMRNILWCEPTVAPFNELPLLPIEYGSKLGKSIFAENYFDEQMHLFIDSLN 828

Query: 650  LLYVGMTRASDQLIICKHSNTSN-EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            ++YV  TRA ++LI    +     E  SN  +   ++   F  +      ++       +
Sbjct: 829  IVYVAFTRAKNELICMAPAPKKELESLSNINSLSALLTTCFTVETPGLDNEIIPLSKFYD 888

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                 +S   P        +            +K+ S       +   +   ++D     
Sbjct: 889  GTTKVFSLGEPT-------QAAYNDAKGADNNEKINSYPSVSSTDRLRIRHQSLDYL--- 938

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
             LE+    +   N GLI+H +L+ I    +  ++  I S            E + + + +
Sbjct: 939  -LENQQLTDSRLNYGLIMHDILRNITH--KADQQKAILSMI--REGRISESEAETVEVEM 993

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +    P      + D+   V     I  P+ +     R D++ I+     I +YK    
Sbjct: 994  EKFWNLPQTNDWFATDTR--VLNEITILTPRGEQY---RPDRVVINGNKATIVDYKFG-- 1046

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                 +    T+I Q+  Y  ++ +          + YVS  K+  +
Sbjct: 1047 -----DKESKTYIQQVKQYMNLIAEM--GYQTNGFVCYVSLGKIETV 1086


>gi|197123847|ref|YP_002135798.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196173696|gb|ACG74669.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 671

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 107/674 (15%), Positives = 198/674 (29%), Gaps = 119/674 (17%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L    Q           +      +    K  + +           ++            
Sbjct: 91  LWLLQQEHEAAGLPRRFAICDAGDQLALVKRCMREVSVDDRKFDAHRVLSLLSRAKNAGK 150

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +          +A  +   YE+A +    +DF+DLI     +L        +R +
Sbjct: 151 KRIVPREAGQGDDYDLVAAEVYPRYEKALRAMRSVDFDDLIARPVAMLAHDPA---LRAR 207

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +   ++L+DE QDT+  Q E+++ L  +           R + AVGD+ Q+IY + GA
Sbjct: 208 CQERFRYLLVDEYQDTNAAQLELLKLLAGE----------RRNVCAVGDDDQAIYGWRGA 257

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E K +LR +R               + L  ++RST  IL   + V +     +  +    
Sbjct: 258 EVKNILRFERHFP--------GAKEVRLEQNYRSTGHILACANAVIAKNAARKAKAL--- 306

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                 +   G+   V                               S     AR +A  
Sbjct: 307 ----FTAGEAGEPVRV----------------------------VAMSEEEDEARFVAEE 334

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I+   G                   VL R    +       R       +    +     
Sbjct: 335 IARQRGEGRP----------WSHFAVLFRLNALSRPFEEAFRE----ASMPYKVHGGPAF 380

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ 471
            D   ++DL+A  +  +  EDD+S   ++  P     +  + ++          + E ++
Sbjct: 381 FDRSEVRDLLAYLKLCVQPEDDVSLSRVVNVPPRGIGDTSMERVHDWAIPRKLHLLEAMR 440

Query: 472 KFANCGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----R 520
           + A           K    +  +       +     +    ++          +      
Sbjct: 441 RAAEIPDLPRGAAEKIGAFVALVDRFQARFREGPVSEAARALVAEVDLFSHVRAGVQSLE 500

Query: 521 FGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            G+  +D L+  L       ++ +  SL   +  L            +    + +MT+H 
Sbjct: 501 AGSRRVDALEGLLRSLDGYVQRTARPSLATWLQRLALDSREE--EDPSGEGGITLMTLHA 558

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVFLV                                                
Sbjct: 559 AKGLEFPVVFLVGVEEDYLP----------------------------------CAGIQG 584

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +    +E  RL YVG+TRA ++L + + +  S   K   RT    + D            
Sbjct: 585 EARDLDEERRLAYVGITRARERLYLTRVAARSKRGKLLPRTPSRFLDDLPPAAHEKVDPA 644

Query: 700 LTNSINKDEWIAYE 713
              +  +D     E
Sbjct: 645 ALAAPPQDVAAHTE 658


>gi|255323065|ref|ZP_05364201.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter showae
           RM3277]
 gi|255299927|gb|EET79208.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter showae
           RM3277]
          Length = 931

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 140/918 (15%), Positives = 275/918 (29%), Gaps = 188/918 (20%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +P        +       +  G           Q A +     E  +        +
Sbjct: 183 ENAAFPNESGVEEALRNMREYVLARGGGKDA------QSAVKEGSPGEILA--------R 228

Query: 77  KFTPQKNIITQEINKKS-PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            F  + ++  +  +K   P+L E     +    +  D    YK+ +              
Sbjct: 229 SFMSRASLDYRTFSKIYTPELDEMFFTLKARLKQYFDALEEYKIAE--------LARFLK 280

Query: 136 HYEEAK----KKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSL 190
            Y+E K    K+   L F D+     +LL+  +  +  + +++D  INH+LIDE QDT++
Sbjct: 281 IYKECKISLNKRLNSLAFSDVTRLVYELLRGGETDAQMLYFRLDGRINHLLIDEFQDTNV 340

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E++R L E+   G   +    + F VGD KQSIY F G + +   +  R   +    
Sbjct: 341 AQYEIMRPLIEEIVAGYGQNGLG-SFFYVGDVKQSIYRFRGGKKELFGKLMRDFPQ---- 395

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                    L +++RS   ++   + VF+                + + +   +   V L
Sbjct: 396 ----IKAQNLEVNYRSKKALVRFTNAVFA----------GKIENFKPQRTPQKEGERVNL 441

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
             Q+        +      +S  D   +           A  +  ++             
Sbjct: 442 VGQMPYFEAEADDLGFVRVSSGDDVAAEA----------AQQVKFLLQKGVCED------ 485

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               DI VL  K  D   I+     L ++  +  V      L      + +    +F   
Sbjct: 486 ----DITVLCWKNDDINKISN----LLSEAGVKSVSEGVMPLLASKNARAVAEYAKFC-- 535

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                              ++ I+K+ T+        +         +    ++   +  
Sbjct: 536 -----------------LFDERIYKLNTEAILDVNAVKLSVNPQKSALESLHYLAGRLGV 578

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
            +  A      +                     +    L EF+    R E          
Sbjct: 579 DMSDADVLRLLEL-------------------AQPYSNLTEFVYNLDRFEAK-------- 611

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                        A + +   V+IMTVH +KGLE   V +                    
Sbjct: 612 -------------ASAKSGEGVKIMTVHKSKGLEFENVIV--CDKMGVGRHDGSNFIAEY 656

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                        + +  +   + L +   +  +EE    LYV +TRA   LII K +  
Sbjct: 657 DAGTGSWQVRHNVKKQCIDEDFARLKEKAARLEREEDMNKLYVALTRAIGGLIIVKKTGA 716

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
           +    S    +         + E ++ + L +    +   +   +          +   I
Sbjct: 717 NGRNPSFFGAYE-------SSGEVIEYLDLVDFSFGEPTPSKARNLSVVGKFEPIKLAQI 769

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
            + + ++                                 ++   + +    GL +H LL
Sbjct: 770 SKQIVDETP-------------------------------KTEGKNQKAIYFGLALHYLL 798

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEV 849
           ++     E   K    S      K     E   +      L   P       +   + E 
Sbjct: 799 EMAEKFDESSLKTAQISMRNAFHKFLDEGELDEIYARGLNLTNEPKFKQMTQAKRVFKEQ 858

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT-HHHVPQEIEHIPYTHIAQLSIYE 908
            +  +            ++D + I +  I + +YKT   ++ + I         Q++ Y+
Sbjct: 859 PLRYESALK--------QLDLLCIGESEICVIDYKTSDKNIDENIA--------QVAEYK 902

Query: 909 KILKDSYPNKSLVCLLIY 926
           +IL   YPN S+   + Y
Sbjct: 903 RILAQIYPNLSVRAAIFY 920


>gi|325916739|ref|ZP_08178995.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Xanthomonas
            vesicatoria ATCC 35937]
 gi|325537048|gb|EGD08788.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Xanthomonas
            vesicatoria ATCC 35937]
          Length = 1245

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 122/932 (13%), Positives = 256/932 (27%), Gaps = 107/932 (11%)

Query: 48   KKAQTLQQASQTQCIEERFSLL-SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
            +    L    +                L        +   ++   ++P     +    D 
Sbjct: 278  EWLTALWHWFENFAAAPSLEHAPHPRLLKLTAAELVSGTNKKFVDRTP--ASPMSHEIDG 335

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            ++    R   ++  +       L     A     K++  V  ++DL+      L+     
Sbjct: 336  YLTALARVEQWRTRRRIRLLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGPQAD 395

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
            A ++ ++  +    L+DE QDT   QW +  ++  +  + +        LF +GD KQ+I
Sbjct: 396  ALVQ-RLRAQYAIALVDEFQDTDDRQWGIFSNVFGEGPLARAA-GLEPALFLIGDPKQAI 453

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F G + +  L      +              L  +FRS   +L  +D +++       
Sbjct: 454  YGFRGGDVRTYLAAAITAELAPP----------LSHNFRSRPGVLAAIDALYAQAGYTDA 503

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD---SQCNPQQESWTSYFDSLPQESSAS 343
               D       +         +Q             +   P                +  
Sbjct: 504  FLTDGIAFHPVQPGTKRNDADLQRDGATAPALTLWRAPEPPPPSKGKPKPKPWSAGRARE 563

Query: 344  ILARRIAYTISNMIGTDTI-FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            +        I   +       +      +QA DI VLVR   +   I      +     I
Sbjct: 564  LATAACVAAIRGWLAGGRDGTATINGNPVQAGDIAVLVRSHGEATRIQQALGAV----GI 619

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
              V   +  L       +L+AL + +L   DD      L + L       I  +      
Sbjct: 620  PAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDATAIAALEHDGER 679

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                 ++                    +     Q   P       LGA  G++      G
Sbjct: 680  HRRWQQHAL------------------DWRERWQRGGPLALIGE-LGATHGQRLLALVDG 720

Query: 523  NEVIDVLDEFLNFTLRNE------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
               +    +        +            L   I+  +      +    ++   V+I+T
Sbjct: 721  ERRLTNYLQLAELLQEADVRALGPHGLVDWLARRIANADDNDEAQQLRLESDARRVQIVT 780

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P+VFL   G         +   +               +++  +   S   
Sbjct: 781  LHKSKGLEYPLVFLPYIGIGRSDKGAGRHCVVHAPELGRQLHW----KTEKDDPTWSAAE 836

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
               K+  + E  RLLYVG+TRA   L I   S   +E+ +       +        E   
Sbjct: 837  AAWKQEQRAEDARLLYVGLTRAEHALWIASGSFHQHERTALAGMLRALDALHGAAGEGTV 896

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             +  +        +        P     +R    +  +          +   +D      
Sbjct: 897  VVDTSTPPTNLPRLPPPLEAQVPPARTPQRHIAPEWWVYSFTQLANADAGAASDPMASAT 956

Query: 757  LNPS--------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP--------EHK 800
            +  S        +      T +++          G+++H + +                 
Sbjct: 957  VVGSGGSDEPAGSEAIAVATEVDAFDPRFAGNRFGVVMHDVFERCDFAAWHAWQPGQPAP 1016

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---------MTTAMSCDSYSEVSV 851
                           +   +  + L  +T L+ + +         +         +E+  
Sbjct: 1017 DGQAAPIVEALQRGGYAQDDLDDGLRMLTALIGHTLTVVLPEGTPLAAVPEPQRRNELEF 1076

Query: 852  ---------SGKINCPKK----------------DIIISGRIDQISISQQNIFIFEYKTH 886
                        +    +                + +++G ID         ++ +YK++
Sbjct: 1077 HFAMRPTRVEALLALLHRFGVVSDRQAFGARQRLEGLMTGLIDLTYTVDGRWYVLDYKSN 1136

Query: 887  HHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
                 + + + +      +  Q  IY   L  
Sbjct: 1137 RLPSYDADALAHAMAHSEYELQALIYTVALHR 1168


>gi|157163878|ref|YP_001466192.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           concisus 13826]
 gi|112801470|gb|EAT98814.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter concisus
           13826]
          Length = 939

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 143/863 (16%), Positives = 268/863 (31%), Gaps = 157/863 (18%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
               K   ++++  +  +K       +L +   E  +    +              L K 
Sbjct: 226 LFKSKVFARESLDYRSFSKIYTS---ELDRLFFELKEAAKNYILEVEKYRLSGFSKLLKL 282

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
             A   E  K+   L F D+      LL +      + +++D  INH+L+DE QDT++IQ
Sbjct: 283 YKASNLELNKEINALSFADINKLVFKLLVQSLDKEALYFRLDGRINHLLVDEFQDTNVIQ 342

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+I  L  +   G   +    + F VGD KQSIY F G + +   +      +      
Sbjct: 343 YEIILPLIAEIVSGYGQNGLG-SFFYVGDTKQSIYKFRGGKKELFDKLGDDFSQ------ 395

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               I  LP ++RS   ++   + VF    +  GL  +     +            +   
Sbjct: 396 --IDIENLPSNYRSLKALVKFNNAVFEEIYHRYGLEFEPQDPAKKD----------ETLS 443

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
             VS   +    +++ +        ++     +A  +      ++             + 
Sbjct: 444 YEVSGECAYFEVEKDDYGYLRVLSDED-----IAGAVVSQAKELLKAG----------VN 488

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           A +I VL  K  D  LI+ +         I  V      L     I  ++   +F     
Sbjct: 489 ASEITVLCWKNSDISLISEVLSSE----GIKSVNEGTLELKRTPLIAAIIEYAKFC---- 540

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
                               +FK        + +     K  N    +            
Sbjct: 541 --------------------LFKEEIYEKNVKALVNANVKKLNIKPEE------------ 568

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELI 551
                            A           G  + D     ++     E    Y +L + I
Sbjct: 569 ----------------SATNSLFYLAKNLGISMAD-----VDILRLFELSAGYKNLSDFI 607

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             LE +   I      + + VR+MTVH +KGLE   V + D   +              S
Sbjct: 608 FNLESFSSKI---SPKSSDGVRVMTVHKSKGLEFAHVIVCDMMGKG--RGDDSNFITEYS 662

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +  +   I   ++ ++  + +++ +K+  ++E    +YV  TRA+  LII K +  S
Sbjct: 663 EKGEWIVKSKISGRENFDSDYASVLEQMKELEKQENINKIYVAFTRATKSLIIIKQAVPS 722

Query: 672 NEKKSNQRTWYDMVY-DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               S    +      ++    +  +        +K E    +     PE   +ER+E  
Sbjct: 723 GNSPSFFSFYTRSDKSEANDYLDLKEFSFGKILPSKSEQKEAKKDEKMPEILKIERQEVE 782

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
            +                                           +      GL  H LL
Sbjct: 783 AKEQKTS------------------------------------GKNLSAIYFGLAFHYLL 806

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT-AMSCDSYSEV 849
           ++     E   +        K  K  P +  +++      L+  P         + Y E 
Sbjct: 807 EMSEKFDEISLEKAKNLMLNKFHKFLPLEVLEDVFSRAKMLIREPKFIECIRDKEIYKEQ 866

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
               K            ++D    +++ I + +YKT     + IE        Q+  Y+ 
Sbjct: 867 PFKVKNELK--------QMDLFCFNEREICVIDYKT---TDKNIEENK----KQVKEYKD 911

Query: 910 ILKDSYPNKSLVCLLIYVSEPKV 932
            L   Y   S++ ++ Y  E K+
Sbjct: 912 ALAKFYEKHSIIAVIFYALEGKI 934


>gi|46445643|ref|YP_007008.1| putative exodeoxyribonuclease V beta chain [Candidatus Protochlamydia
            amoebophila UWE25]
 gi|46399284|emb|CAF22733.1| putative exodeoxyribonuclease V beta chain [Candidatus Protochlamydia
            amoebophila UWE25]
          Length = 1166

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 142/950 (14%), Positives = 286/950 (30%), Gaps = 127/950 (13%)

Query: 24   PYFQVSDINKYVSLSME-TGNPTILKKAQTLQQASQTQCIEER----FSLLS----SFFL 74
                + D  +         G  +       + +        E     F  L      + L
Sbjct: 233  SSLLMEDFQEQAPFFRNYKGAKSKADTLIKISRFVALFDQTEWTVENFDQLICDGLEWVL 292

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
                   KN          P     L  + +  +     +                + L 
Sbjct: 293  ALDPKLLKNPA-ASFRLNYPGFTALLHHTLERVV-----YLARDESILIARLAKACQKLL 346

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             +Y+   ++   L  +DL+   +  + + +       +I       +IDE QDT  +QW+
Sbjct: 347  RNYQ---REEEKLSPDDLLRKMDWAIGQEN----FLKQIQMIYQAAIIDEFQDTDPLQWQ 399

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            + R L           +    L+ VGD KQSIYSF  A+    L   +            
Sbjct: 400  IFRRLFLP-----QDKTWKGYLYLVGDPKQSIYSFRQADIYTYLAAAQALGHE------- 447

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT-TIRHRSSRIGQVGTVQLWEQ 313
                 L +++RS   ++  ++ +FS     + +    T   + ++          +L+  
Sbjct: 448  -HCFSLDVNYRSQPALVNALNVLFSPDHTPKFIPLPKTNFHLTYQPVFASTFNQTRLF-- 504

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                     +      ++  +S  Q+    +    IA  I  +    T         +  
Sbjct: 505  --EDEKGAVHFFMGDGSNKKNSTIQDLEQKVFFPFIAQEIRRLRKQKT---------LAY 553

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
                VLVR R     +        + Y++  +      L +  A+  L+ L + +L  ++
Sbjct: 554  SQFAVLVRDRYQALRLAEYF----DSYQLPYLNQRGTSLAESPALNALIDLIKAVLHPQN 609

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
              +   +L + L  +S + +          E++   IQ      I   Q    +    + 
Sbjct: 610  IGTLRTLLGNSLIGWSHEKL----HDSSNLESILSVIQSLKQVLIE--QGFSIFYDRFLQ 663

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL----QE 549
                 +       +L  + G   +          V++        +E N    L     +
Sbjct: 664  SCWGKNKLSILEQLLAKEGGVDFY-HDLQQIAEIVINH-----QYHEWNGPEGLIPFLDQ 717

Query: 550  LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
                 E   P +KR    + + ++I+T+H +KGLE  +VF +         ++  K  ++
Sbjct: 718  FQKWDENEDPRVKRFQDPSKDGIKILTLHVSKGLEFDIVFALGLI-----QRNSFKDELI 772

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
            P   +   + I +          S+   H  +    E  R LYV MTRA  QL I    +
Sbjct: 773  PIEKEGKFVLIPL-------EESSEQRLHYCEEIDAEKMRQLYVAMTRAKYQLYIPISLH 825

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI----NKDEWIAYEWSTHHPENTPLE 725
              +E+          +              L + I     +      E      + T   
Sbjct: 826  IPSEQIKYGEASPLDLLLGRLGQTECSYETLYDRIRHFNGQSFIKFMEEIGSQNDMTYSI 885

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-------- 777
              E   +   +  +P     P K+       L  S+  +  + +  SL            
Sbjct: 886  HREIFLEKNKKDSVPFIDLEPPKSISILTTPLLMSSFSSLNRISSFSLSQTPPHDFNNSI 945

Query: 778  -------QTFNRGLIIHKLLQVIFTLP------EHKRKNFITSYCTKNAKLWPAKEYKNL 824
                    +   G++IH+LL+ I            +    I  +               L
Sbjct: 946  KTEHTLPASSETGILIHELLEKISFRDFKGINLAVETLPLIRPWIQNEMYRPWENVLAAL 1005

Query: 825  LLSITRL----LENPM-MTTAMSCDSYSEVSVSGKINCP-------KKDIIISGRIDQIS 872
            +  +  +      +P  +          E++               +   +I G ID I 
Sbjct: 1006 VYQVLNVDLGIYSSPFCLADIEPSKLVREMTFLFPYESDLAIEGLVEGQGLIKGFIDLIF 1065

Query: 873  ISQQNIFIFEYKTHHHVPQEI---------EHIPYTHIAQLSIYEKILKD 913
            + +   +I ++K++                  + + +  Q  IY + LK 
Sbjct: 1066 VHKGKYYIVDWKSNWLGSSNECYDFFHLHQAMLDHNYFVQAKIYTEALKR 1115


>gi|221309025|ref|ZP_03590872.1| hypothetical protein Bsubs1_06531 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313350|ref|ZP_03595155.1| hypothetical protein BsubsN3_06457 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318274|ref|ZP_03599568.1| hypothetical protein BsubsJ_06401 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322547|ref|ZP_03603841.1| hypothetical protein BsubsS_06507 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81555904|sp|O31626|YJCD_BACSU RecName: Full=Putative ATP-dependent DNA helicase yjcD
          Length = 759

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 96/619 (15%), Positives = 187/619 (30%), Gaps = 118/619 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +K +  + I++K   + + L++                  +       L      HYE  
Sbjct: 252 KKALYEEGIDEKESPVDQALQQIGFWKNTYVPNERIPLKDEWEKQVYRL----YEHYERQ 307

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           KK++   DF+D+     +L         +  +      +ILIDE QD + +Q+++++ L 
Sbjct: 308 KKEHSQFDFDDMASACYELF---IERPDLLEQYQSRFTYILIDEFQDINPVQYKIMQMLA 364

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                     S  + L  VGD+ QSIY+F G+ P  +L  ++               I L
Sbjct: 365 ----------SPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYP--------GAKTIYL 406

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  I++  D V    +N    + +        ++R      V  +         
Sbjct: 407 TANYRSTHPIVSSADIVVKKNKNRYAKTLE--------AARDDIQVPVLFYPYD------ 452

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A  +   I   I                +D  VL 
Sbjct: 453 ---------------------EEEEATMVVSDIKEKIQNG----------ASPEDFAVLY 481

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           R       I        +   I    +           ++ ++A      +++D  +   
Sbjct: 482 RTNSGGRAIYERL----HQSSIPYTADRGVQSFYSRRIVRQILAYLYASQNEDDTEAIKH 537

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +L  P     +  +  +       +                    IK I       +   
Sbjct: 538 LL--PALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIKKIVPFFASLRTMK 595

Query: 500 PHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           P +  T   G     +    R        +  D L +      +       ++ + ++ +
Sbjct: 596 PVEAITFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKF-----KTIPDFLAHV 650

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +      K     +   V++MT+H +KGLE   V+++ T      H              
Sbjct: 651 DHMRAAEKNRTDEHG--VQLMTIHRSKGLEFKTVYVLGTVDGSIPHDFSL---------- 698

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                              +  +   ++  EE  RLLYV MTRA   L +   +N   + 
Sbjct: 699 -------------------ETARKGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKT 739

Query: 675 KSNQRTWYDMVYDSFHNDE 693
            +  R  Y ++  +     
Sbjct: 740 ANRSRFLYPLLQKARQPLH 758


>gi|257784673|ref|YP_003179890.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
 gi|257473180|gb|ACV51299.1| UvrD/REP helicase [Atopobium parvulum DSM 20469]
          Length = 1165

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 148/1000 (14%), Positives = 301/1000 (30%), Gaps = 144/1000 (14%)

Query: 21   WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA-SQTQCIEERFSLLSSFFLTQKFT 79
              +   ++  +   +             +A+ LQ   S+     ++  +LS     Q F 
Sbjct: 196  LDVLKAELESLCGALEAFKAAIAEKKPDEAEQLQSVQSELLSKLQQHLVLSLTDFDQAFW 255

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
                   + +     ++K    ++  +       F   +          + + +   +++
Sbjct: 256  EALGKAVKAVRSS-KEIKMVRDEAVYQLKVCSSLFGLIQDVSEGQRLKDVTEQVYKLFKQ 314

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K     LD +DL+  T  + ++    A +      +   +++DE QDT   Q ++I+SL
Sbjct: 315  KKLAIGGLDNDDLLHLTAKVFEEHPEIAAV---YTDKFKLVMVDEFQDTDQQQVQMIKSL 371

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
            +             + L  VGD +QSIY F GA+     R +    +             
Sbjct: 372  SGK---------DAQYLTTVGDAQQSIYRFRGADVDVFFRRQAEVPEDLQP--------R 414

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  +FRS  +IL  V KV S         + S       +  I     V        +  
Sbjct: 415  LVDNFRSHNEILRFVAKVCSADGMIADFMDLSAGREEPTTPFIAHSPRVYFEVTKFVKSG 474

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
            S                   S   ++A ++A  I+ ++  +          IQAKD+ +L
Sbjct: 475  SSKPGDDI------------SRKQLVAHQLADRINTLMQDE---------NIQAKDVAIL 513

Query: 380  VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF-V 438
            +   K+        R       I  V +      +   ++ + +L + + +  D      
Sbjct: 514  MSSVKEAQPYIEALRTF----GIESVVSGASTFGEQPEVELIGSLLQTLANMYDSYEGLF 569

Query: 439  CMLKSPLFNFSEDDIFKI----------CTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +L S +FN    D+  +           T R   E++             K ++ ++ +
Sbjct: 570  PVLSSEIFNLDASDLLLLGTNFGENGQKITNRDIAESLVNDAFNPPFEISLKLKNALEIL 629

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQNSYSS 546
             +           D    ++       +  +    G   I  +   L      ++     
Sbjct: 630  SDARSSLSNNRVSDVLKKVVLDAGWISRLQNKGNEGQSKIANIFAALEQIDSLQKELSVG 689

Query: 547  LQ----ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            +                + K  HS+  N V  MT+H +KGLE PVV +V   S   +   
Sbjct: 690  IASVAKAFSEWCGTAKESPKVLHSSTQNAVTFMTIHASKGLEFPVVAVVGAVSGPKASAG 749

Query: 603  IKKMHIMPSLNDDPGIPIWIPQ--SKSRNNIVSDLIKHLKKSTQEEYN------------ 648
             +    +   N          +      +          +     ++             
Sbjct: 750  GEPFLHVKKDNSYQIAFSSSSKKLKNLYDGCHEVPTSIDECKNLLKWRMFLEAQENEAEE 809

Query: 649  ----RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT------------------------ 680
                R LYV +TRA + +I+    + + E  S + T                        
Sbjct: 810  QEQNRCLYVALTRAREAVILTSTIDLTKEGISPRYTRKITDALFEETPLSAGEHLFEYGG 869

Query: 681  ----WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                   +V  S   DE ++   L      D     E  +   E   +  +  +    + 
Sbjct: 870  NLAGCMRVVEGSGKKDEPIQVEGLELVEPSDVNPREEKYSQAVETFDIYEKAELSVASET 929

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT----------------- 779
                +K F    +   +      S  + K +   + +   ++                  
Sbjct: 930  TYDQRKGFFSYSSAHQQMAENFESENNQKLEEEFKGVSQGHEADNPQPATEASVVLPGTL 989

Query: 780  -------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                    + G   H+L Q++        +  I   C KN+    A      +     L 
Sbjct: 990  ADDGVDPTSLGSAFHELAQIMVETQSKVDEQIIDRLCLKNSVPQRAVSR---VKQALELW 1046

Query: 833  ENPMMTTAMSCD--SYSEVSVSGKINCPKKDIIISGRIDQISISQQ--NIFIFEYKTHHH 888
             N  +           +E   + +++    +  + G ID ++ ++   +  + +YKT   
Sbjct: 1047 SNSEIRQEALAHDVVIAESPFTLQVDSEYGNY-VEGAIDLLAYNRGSKDALVVDYKTG-D 1104

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
                   I   H  Q + Y  +L      K + C  + V 
Sbjct: 1105 KGLSAAQIYEHHQMQANFYAYVLMQRGFTK-VECAFVCVE 1143


>gi|289617273|emb|CBI56040.1| unnamed protein product [Sordaria macrospora]
          Length = 784

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 92/584 (15%), Positives = 170/584 (29%), Gaps = 151/584 (25%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+   K++ +LD++DL++   +LL+K              I  +LIDE QDT+ +Q+
Sbjct: 184 YQEYQSHLKRSNLLDYDDLLVRCVELLRKFPSCV-------SNIQTVLIDEYQDTNGVQY 236

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E++R L +            + +  VGD  QSIY +  AE K + R  R   K       
Sbjct: 237 ELMRLLAQ----------KHQRITIVGDPDQSIYGWRSAEIKNLWRLLRDYPKTDE---- 282

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I L  ++RS   IL +   V    +               R               
Sbjct: 283 ----ISLEENYRSFQAILDLSLLVIQQDKKRYQKVLKPVHDRGSRPV------------- 325

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 L +  +A   A  I   I   +            ++  
Sbjct: 326 ----------------------LRKLKNAHTEAEWIVSEIRRAL-------YMSGTMLTY 356

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            D+ +L+R    +  +            I       F   +   IK ++   R I   ++
Sbjct: 357 NDVAILLRSASLSRHVESAL----GKAGIPYRMVGGFKFYERAEIKTVLDYLRVIHQPDN 412

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----------- 482
           + +F  ++  P     +  I  +  +  ++      +      G    +           
Sbjct: 413 NDAFGRVMNVPKRGIGDGTIKNLIEEAEKSSLSLYSLLVKHCRGDRTAKTKITKHAEQKI 472

Query: 483 --HVIKYIHELIHIAQFCS------PHDFFTLILGAK---KGRQQFISRFGNEVIDVLDE 531
              +I+ ++ +    +  +        D    +L A       Q        +    + E
Sbjct: 473 SGELIRMLNGIRKKMEEATEGKSLGLVDLIDHLLTALNFQNYLQVTYPDDHEQRWANVQE 532

Query: 532 FLNFTLRN-------------------EQNSYSSLQELISELEQYPPTIKRAH-SANHNE 571
            ++                        +      L + ++ +       K      +   
Sbjct: 533 LISLANDFVRDLDRSGEDALPEIEGLEQSKEEDVLAQFLANVSLASDAQKGEDGQESKPM 592

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V I T+H AKGLE P+VF+    +    H                               
Sbjct: 593 VTISTIHAAKGLEWPIVFIPAVYNGSIPH------------------------------- 621

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                  ++    +E  RLLYV MTRA   L +      +    
Sbjct: 622 -------MRSEDGDEERRLLYVAMTRAQALLYLSYPVYNNPGSS 658


>gi|149181197|ref|ZP_01859696.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           SG-1]
 gi|148851096|gb|EDL65247.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           SG-1]
          Length = 743

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 107/611 (17%), Positives = 204/611 (33%), Gaps = 98/611 (16%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            K +   +EE K+ N  +DF+D+++   ++L+  +    +   + +   +I++DE QDT+
Sbjct: 204 VKKILLMFEEWKENNQKIDFDDILVKACEMLRNDE---KLLDALQKRFQYIMVDEFQDTN 260

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+E+I+ +              R LF VGD+ Q+IYSF+GA+   +L   +       
Sbjct: 261 WLQYELIQMIARQ----------SRNLFVVGDDDQTIYSFNGADNSFILDFDKKYP---- 306

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L +++RS + I+ + ++V S  +  +  +  +      +           
Sbjct: 307 ----DAKVITLDINYRSNSHIVGLGNQVISGNKYRRQKTLRAVKEEPVKPQY-------- 354

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                       + S++   A  I   I  M             
Sbjct: 355 ---------------------------SRPSNSDEEAEWIISKIKEMTREG--------- 378

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            ++ KDI +L R    +  I       +  +  S    D     DH  +K L+   R  L
Sbjct: 379 KLKYKDIAILHRTSSSSRAIFERLVIEEVPF-FSYNLGD-QHFYDHWIVKPLIDHLRLSL 436

Query: 430 SQEDDLSFVCMLKSPLF----NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
              +  +   +L +             I +   ++         +        +K +  I
Sbjct: 437 VPRNFSAIEGVLPTLYINREAGVKFITIQEETARKKYPMIHLTDMHTLQEFQRNKVKERI 496

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           K I  L   A   +                        E  + + E L   L    + + 
Sbjct: 497 KLIKSLSAEAPAAAVKRMKKEFYD--SYLDTNERVSVTEHKENIKETLAE-LEASADRFP 553

Query: 546 SLQELISELEQYPPT----IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           S+   I+ ++           +   +    + +MT+H +KGLE P VF++        H 
Sbjct: 554 SISAFIAFIDNMTEKHEKMQHQDKESFAEAISLMTIHRSKGLEFPAVFVIGASEGNLPHS 613

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                   K  + I  +  K    +  EE  RL+YV +TRA  +
Sbjct: 614 SAVNAD------------------KLEDKIHHEARKKDVMA-IEEERRLMYVAITRAKRE 654

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L I   +    EK+   R   D   +     E   K +    I    W+           
Sbjct: 655 LFISSPAYYQGEKREISRFLTDAFREKLSKKETPLKKE-PPKIKVAAWVCSSDQCIAWSR 713

Query: 722 TPLEREETIKQ 732
              E ++ +K+
Sbjct: 714 IKTEADQKVKR 724


>gi|152997238|ref|YP_001342073.1| exodeoxyribonuclease V subunit beta [Marinomonas sp. MWYL1]
 gi|150838162|gb|ABR72138.1| exodeoxyribonuclease V, beta subunit [Marinomonas sp. MWYL1]
          Length = 1240

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 127/1047 (12%), Positives = 296/1047 (28%), Gaps = 199/1047 (19%)

Query: 8    SLNESYELIYKDLWPLP------------------YFQVSDINKYVSLSMETG------- 42
             ++++   + + +W  P                       D    +S + ET        
Sbjct: 188  PMDDTKAALIQPIWSNPDALLKDLYLLNNQPDAKIAVPDYDWESALSQAQETMMAVRAMW 247

Query: 43   NPTILKKAQTLQQA-----SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK 97
                      L+++        +   +    ++ +  + +F   K++   + N+ +  L 
Sbjct: 248  LAQSQDIIDALERSGIKRTFWRKDPSKDIQAMTQWANSTRFELDKSLEKFDTNEHASRLS 307

Query: 98   ---EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
               +         +               +    L +      +  K+    L F DL+ 
Sbjct: 308  KGGDLPAHEFFALVLALRESFPDAGRLKAVLLTQLWQQTQERMKRWKRSTQSLTFTDLLT 367

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHI----LIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
            + +  L + +       K+ + I H+    LIDE QDT  +Q+ +  ++           
Sbjct: 368  SLDVALAQDEAG-----KLAERIRHLYPIALIDEFQDTDAVQYRIFSTIY----APAQVD 418

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
             +   L  +GD KQ+IY+F GA+    L  K+              +  L  ++RS+A +
Sbjct: 419  QNALGLIMIGDPKQAIYAFRGADIYTYLAAKKRVDS----------VYSLATNYRSSAAM 468

Query: 271  LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
            +  V+ +F+       ++      ++ R    G            S+        Q  + 
Sbjct: 469  IRSVNGLFTTQAEPFRVTGIPFVEVQDRGIASG-----------FSRQGQTQAALQFLYQ 517

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVLVRKRKDTPLI 389
               + +  +     +A   A  +  ++            + ++ KD+ +LV        +
Sbjct: 518  RSDEPVSAKEYRQTMAESCAAHLHELLLEGQQGEALIDGKGVRPKDVALLVTNFSQANAL 577

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                R        SV  +D+  + + +  ++L+ +   ILS   +      L + L ++S
Sbjct: 578  KDALR---QRGIASVYLSDKGSVFETVEARELLIVLTAILSNGQESKLRSALATSLVDWS 634

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
             +D+  +       E   +  + +          +      L  + +F         IL 
Sbjct: 635  LEDLDTLNHDDVVYEKWGQAFRDYL--------ELWDKQGLLPMLREFMQDVSLAANILS 686

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-------PPTIK 562
               G ++            L E L      +     S + ++  L              K
Sbjct: 687  HTGGERRLTDFL------HLTEKLQQ----KSLELDSKEGVLRYLRLAIQNPNGNSDEQK 736

Query: 563  RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                 +   VRI+T+H +KGLE P+V+L               +      +         
Sbjct: 737  IRLETDAELVRIVTIHKSKGLEYPIVYLPFA------------LTPYRDQDSSALYHDAQ 784

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             Q     +      +  K+       RL YV +TR+ +   I       +  K+      
Sbjct: 785  QQLWIAIDPDEAQTELHKEELYAAEIRLAYVALTRSKEACFIGSMEVGKSSNKTRGAVSD 844

Query: 683  DMVYDSFHNDERVKKIKLTN--------------------SINKDEWIAYEWSTHHPENT 722
              +          + ++  +                     +  +      +        
Sbjct: 845  VHLSGVGALIGEGESLEAGDLYPSLERLCERYQDGQMQLLDLPDEPQRLPRFKMAAFNKV 904

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPY------------------------ILN 758
              E  E   +    +           + + E                           + 
Sbjct: 905  QDELIEPHAREFTGRVERDWWVGSYSSLVVEDKERHDESVPGLDEMTRFVDPLLDNMEVP 964

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ--VIFTLPE-----HKRKNFITSYCTK 811
             S ++   K   ++  +  +    G  +H  L+   +  +          K         
Sbjct: 965  ESPLELAQKEPEKNRFTFPKGAKPGTFLHDTLEGKALHDVSANPSFKDLLKTSHHKLMAN 1024

Query: 812  NAKLWPAKEYKNLLLSIT-RLLENPMMT-----TAMSCDSYSEVSVSGK----------- 854
              +     E++++L      ++   +M      + +      E+                
Sbjct: 1025 FYERQGFDEWQDVLSEWLPDIVNTELMAGMSLGSLVPSACRKEMEFFIPVTGMNALQLDR 1084

Query: 855  --------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY-- 898
                          I       ++ G ID +   Q   ++ +YK+++      ++ P   
Sbjct: 1085 ISREHDGVSKVAPMIQDRPLKGMLKGFIDLLFEYQGRYYVLDYKSNYLGDDFADYEPEKL 1144

Query: 899  -------THIAQLSIYEKILKDSYPNK 918
                    +  Q  +Y   L      +
Sbjct: 1145 VHAIAEHRYDLQYQLYTLALHRLLKQR 1171


>gi|294053735|ref|YP_003547393.1| Exodeoxyribonuclease V [Coraliomargarita akajimensis DSM 45221]
 gi|293613068|gb|ADE53223.1| Exodeoxyribonuclease V [Coraliomargarita akajimensis DSM 45221]
          Length = 1201

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 133/989 (13%), Positives = 291/989 (29%), Gaps = 138/989 (13%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQCIEERFSL 68
               E    ++  +       +     L+ E        ++    L  A+      +RF  
Sbjct: 208  RHREPFQGEIGSVGATLSEVVRDIQLLAAEADAIVDEFRSYQGQLNGATYKADFFDRFES 267

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEK---LKKSQDEFIKIRDRFNTYKMFKSTLA 125
            L S  L    +     + +          ++     + +  F K  +R    +       
Sbjct: 268  LLSSILDDPLSSNAKDLNKLSACTIQAKFKRDFKGTELRSPFFKACERLLAEQGRYGDDF 327

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                  +    ++  K +   + ++D+I + +  L +      ++ ++ +     L+DE 
Sbjct: 328  LQCFDSWFIESFQHLKAERGFMTYDDMIFDLDRALSRSG---RLKRQLCERYRAALVDEF 384

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT   Q+ + R L  +           R    +GD KQSIY F GA+    L+ +    
Sbjct: 385  QDTDGRQYSIFRKLFAESTEH------GRYFAMIGDPKQSIYGFRGADISAYLKARN--- 435

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                          LP+++RS   ++   ++ F   +  + L  +   +I   +      
Sbjct: 436  -------AAHYRYTLPMNYRSEKSVVDATNRFFQGGDLGKVLGSNEDESILFDTVDANDT 488

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               +L      Q D                   +SS + +A  +   +  +     ++  
Sbjct: 489  PKRRLCFAGKVQPDRLYERALPRPIDERVKSAHQSSVTAMAEDV-ERLLVLSEEGRVYFE 547

Query: 366  GK-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                   +  ++A DI VLV   ++   +        +   I  V +    + +    ++
Sbjct: 548  STEMGLSRERVRASDIAVLVNTNREAAEVQDEL----HKRGIVAVRSKTGSILETAEAQN 603

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
             +      L   +    + +L S LF  ++ ++  + +           I +       +
Sbjct: 604  FLYFLMACLDPSERGINL-LLISSLFAKNDAELRLLSSSERR------AIYELFRLLGKQ 656

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            ++         +              +L    G ++  +         + E      R E
Sbjct: 657  WRDGAAVSRIWMRFVDERF---LREHLLQRTDGERELTNYM------HIAELAQELERVE 707

Query: 541  QNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            + S   L++ + E                   ++   V IMT+H++KGLE P+VFL    
Sbjct: 708  RLSPDRLRDRLWETIQNGSNSSLSDDYLVRLESDAAAVTIMTMHSSKGLEFPIVFLPTLW 767

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +  + +  +     P L  DP  P                   +  S+  E  RL YV 
Sbjct: 768  QRGINQRSKR----EPQLKTDPKDPDCFVG-------FEVDAAQVVASSSSENLRLGYVA 816

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER----------------VKKI 698
            MTRA    +         +  ++ +             +                 V  +
Sbjct: 817  MTRAVHFSVYYNVRGLPKQHGASNQADGWFDQWLCDQRDGRYPNEAEEDFLGELRCVSPV 876

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            +LT++ + +E   +E +   P +  +     + +   +++           D      L+
Sbjct: 877  ELTDTTSPEEVHVHELTRAIPTSYQITSYSALARSEHKEQDFDPSTRSGMEDAPREDRLS 936

Query: 759  PSTI-DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
             S   D     +   L +       G  IH++L+          +    +  +++     
Sbjct: 937  RSLAGDLSSVESDLLLEAFPGGVRTGTCIHEVLERCDFTQPETWQRLAHAVISRHFPDGG 996

Query: 818  AKEYKNLLLSITRLLEN-------------------------PMMTTAMS---------- 842
                +  +  +  LL                           P M               
Sbjct: 997  DDSLEERVSQLVELLTTLTAQVRSSSAGLNIDLAKLSPSACIPEMEFYFPVEQVDLAGLE 1056

Query: 843  --CDSYSE-VSVS---GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH-------- 888
                +++E V       +      D  ++G +D      Q  FI ++KT+          
Sbjct: 1057 AVLRTWAERVGFEYNSAEYRARDIDGYLTGSVDLFFTQAQRFFILDWKTNRPLRRHLPLR 1116

Query: 889  -----VPQEIEHIPYTHIAQLSIYEKILK 912
                            +  Q  IY   + 
Sbjct: 1117 SSYDRPGMHAHMEHGRYYLQALIYSVAVS 1145


>gi|237811673|ref|YP_002896124.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            MSHR346]
 gi|237504018|gb|ACQ96336.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            MSHR346]
          Length = 1260

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 129/1002 (12%), Positives = 285/1002 (28%), Gaps = 146/1002 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452  RYTLAVNQRSTPAIVGACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317  QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                        WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504  TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
              I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564  SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV------IKY 487
                   L S  F      ++++     E + +    +  +    +           ++ 
Sbjct: 620  LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARAASAGAPAPSPADADAMGWVER 679

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNS 543
                  + +       +  + G  +  ++ ++    E      + L E        +   
Sbjct: 680  FSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQPGI 739

Query: 544  YSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF             
Sbjct: 740  APTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPA 799

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
               +      +D+ G  +        +       +   +    E  RL+YV +TRA  + 
Sbjct: 800  GSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVYVALTRAVYRC 857

Query: 663  IICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             +    + ++ + K++ +     +V  +  + +   K    ++   + W A         
Sbjct: 858  YLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPVTLG 917

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--------------- 765
              P+           + +  +      +   +   I + S++ +                
Sbjct: 918  ALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDESGIARAADDE 977

Query: 766  ----------------------------------GKTNLESLLSDNQTFNRGLIIHKLLQ 791
                                               +   + +L+  +    G  +H+LL+
Sbjct: 978  MRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAEDDILAFPRGAAAGECLHRLLE 1037

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAMS 842
            +                  +          + L   +TRL+ +           +     
Sbjct: 1038 LSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELVPGMRLAALDP 1097

Query: 843  CDSYSEVSVSGKINCPKKDII----------------------ISGRIDQISISQQNIFI 880
                +E+           + +                      + G ID I       +I
Sbjct: 1098 ARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDMIVEHDGRFWI 1157

Query: 881  FEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
             ++K++H             +     + +  Q  +Y   L  
Sbjct: 1158 VDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1199


>gi|319897107|ref|YP_004135302.1| exodeoxyribonuclease v beta chain [Haemophilus influenzae F3031]
 gi|317432611|emb|CBY80972.1| Exodeoxyribonuclease V beta chain [Haemophilus influenzae F3031]
          Length = 1201

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 134/901 (14%), Positives = 279/901 (30%), Gaps = 132/901 (14%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
              +  +     SP +     + ++    +       ++           + L     + K
Sbjct: 313  SALGEKCEEGASPFIAPIFTELEERANALISPDLLRRII-----LYHYRQSLQQKLLDYK 367

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
              +    F+DL+    + L+       +   I  +    +IDE QDT   Q+ +   +  
Sbjct: 368  LNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAMIDEFQDTDSQQYAIFSKIYR 426

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            D                +GD KQ+IY F GA+    L+     Q R            L 
Sbjct: 427  D------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSRFE----------LT 470

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             ++RS  +++  V+ +F  P++         T +  R               +    + +
Sbjct: 471  KNYRSEKNLVDGVNALFDFPQSPFIYQNIKFTAVDSRDDH------------LRFYLNGK 518

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-SNGKKRVIQAKDILVLV 380
              P    + +  D + +   A I A  I Y + + +    +F +    + +QA +I VLV
Sbjct: 519  AEPAYRFYLTESDKVNKTEMAKICAVSIQYWLKSAVENQVVFQNEDTCKTLQAANIAVLV 578

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R + +  L+    + L      SV  +D+  +      K+L  + +  L+  +    +  
Sbjct: 579  RDKNEAALVKNELQKLGIA---SVYLSDQNSVFHSNVAKELAWVLKACLNVAERP-ILNA 634

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            + + LF  +  DI +I           E   +      +++Q   +    L  + Q    
Sbjct: 635  IATALFGLNAADIHQIQQN--------EADWQRWADSFAQYQQTWQRQGILAMLHQILLE 686

Query: 501  HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPP 559
                  +L    G +             L E L       ++  + L     +++ +   
Sbjct: 687  QGISERLLSQATGERDLTDFL------HLAEILQQAATLHESEAALLSWFEKQIQGEGRQ 740

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              +    +    V+I+T+H +KGLE  +V+L             K ++I  S   D  + 
Sbjct: 741  EAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLA-APSKDPSKKDINIYYSKERDETLW 799

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL----------------I 663
                ++          +  L + T  E  RLLYV +TRA  Q+                 
Sbjct: 800  DIENRN----------LNALCEETFAEELRLLYVALTRAKYQMAFALPAQFDKKWNALHY 849

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSF-------------HNDERVKKIKLTNSINKDEWI 710
            +        E   +     + +  +F              N E +  + +    +  +  
Sbjct: 850  VLSQGEIGKEIALSAPKDTETLLQAFKEKMRDNVEICTTQNLEALPTLSINTKNDDLKVA 909

Query: 711  AYEWS-THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
             +  +       T     E   +  +           + +D  +    NP  I T     
Sbjct: 910  EFTGNIEKDWRITSFTSIEQAHRRQNYFTERAGKKHAVFDDAKDYDSKNPIEISTALLNE 969

Query: 770  LESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
             ES  L   +    G ++H+  +  +       +       +        +  +N L  I
Sbjct: 970  SESNILDLPRGKQVGTVLHRHFENCYFSDLANTEEIDKLRQSLQLDETFTESLQNWLQQI 1029

Query: 829  TRL-LENP---MMTTAMSCDSYSEVSV-----------------------SGKINCPKKD 861
            +   L +     +    + D   E+                         S  +   +  
Sbjct: 1030 SHTPLSHEIGIELADLANKDCIKEMPFYLAIREHFDVEAFNHTLKAHHLPSEPLQFEQIQ 1089

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILK 912
             ++ G ID +       ++ +YK++              + E +   +  Q  IY   L 
Sbjct: 1090 GMVRGSIDLVFRHNGKYYLVDYKSNFLGSTLADYNQEALKKEMLHSHYDWQYLIYTLALH 1149

Query: 913  D 913
             
Sbjct: 1150 R 1150


>gi|255099864|ref|ZP_05328841.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-63q42]
          Length = 688

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 102/550 (18%), Positives = 191/550 (34%), Gaps = 115/550 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE K K   +DF+D++I T  LL     +      +     +ILIDE QD + +Q
Sbjct: 176 VYNLYEEQKSKVNKIDFDDMLIRTYYLLLNNKSA---LEMVRNVYKYILIDEFQDINKVQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +EV++ +                +FAVGDE QSIY F GA P  +L  ++          
Sbjct: 233 FEVLKLICSPL----------NNIFAVGDEDQSIYGFRGARPDFLLEFEQYFNN------ 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L +++RS ++I+   +++    +N                   G  G+V    
Sbjct: 277 --TKKIILDINYRSKSEIVHTANRLIDKNKNRYEKI---------IKCSQGDGGSVT--- 322

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           + S  DS  +       A  IA  I + I  D          ++
Sbjct: 323 ----------------YISPHDSEEE-------ALYIAREIIDEIQKDY---------VE 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQ 431
             D  V+ R    +  +  +      D +I  V  D    + DH A +D++A  R  ++ 
Sbjct: 351 YSDFAVIYRTNIQSRALVDVF----MDMRIPFVVKDSVITIYDHWASQDILAYLRIGINP 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           + +  ++ ++  P    S+D I  +  +      +             K    I  +   
Sbjct: 407 KSNKDWLRIINKPFRYISKDSINMVKDENDFITALINKCNLH-----PKQVKTINDLEID 461

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI------DVLDEFLNFTLRNEQNSYS 545
           +      +P +  + I  +    +  +    N  I      ++L+E  +          +
Sbjct: 462 LSYLNTLNPKNAISYIRTSLDYDRYVLDYCSNRKIKTNGLVEILNELESSATNF-----N 516

Query: 546 SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           ++ E +  +++    +   +       V   T+H+AKGLE   V+++        H+   
Sbjct: 517 TVTEFLEHIDRVKTELTENNKNKQTEGVIFTTMHSAKGLEFRNVYIIGVNEGTIPHEKSY 576

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            +       +                                  RL+YV +TRA ++L I
Sbjct: 577 DIWKEEKKEEQLEEE----------------------------RRLMYVAITRAEEKLCI 608

Query: 665 CKHSNTSNEK 674
               N   +K
Sbjct: 609 SSTLNKYGKK 618


>gi|119775036|ref|YP_927776.1| exodeoxyribonuclease V subunit beta [Shewanella amazonensis SB2B]
 gi|119767536|gb|ABM00107.1| exodeoxyribonuclease V, beta subunit [Shewanella amazonensis SB2B]
          Length = 1224

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 137/1062 (12%), Positives = 297/1062 (27%), Gaps = 178/1062 (16%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            E +  +                +    ++ T     L      + A     ++  +  ++
Sbjct: 208  EDFSKLASGFSARIARLRLAWQRQAEDTLTTLCKLPLNGVSYGKAADGFPKLKNHWDTMT 267

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            ++ L  + TP +  +           K       +    +          ++ + +  + 
Sbjct: 268  AWSLRCEGTPPEKAMQAVAYGNIKLNKGGQLPGPETLSLLVQIDELLHAQENLMPAFLVL 327

Query: 131  K--YLNAHYEEAKKKNCVLDFEDLIINTNDLLK----------------KRDVSAWIRYK 172
                + A ++  K +  ++  +DL+ +    L                  R+++  +  +
Sbjct: 328  AKNEIQARFDGLKAERNLMAPDDLLKHLAKALGVQGSGSGSGFEPASEIDREIALRLSSE 387

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            +       LIDE QDT  +Q+ +  +L              + L  +GD KQ+IY+F G 
Sbjct: 388  VASRFPMALIDEFQDTDPLQFAIFSALYR-------QQPRAQGLLMIGDPKQAIYAFRGG 440

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +    L  +R             +   L  ++RS++ ++  V+ VFS+ E         +
Sbjct: 441  DIHTYLGARR----------TAAAHYSLGTNYRSSSAMVQAVNTVFSVRERVF-----LS 485

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              I          G   L   +  +                  L ++++ +++A   A  
Sbjct: 486  DEIPFEPVAASDSGAKTL--LIDGKTQGPALQIALLGEDPDKGLNKQTARALMAEDAAAH 543

Query: 353  ISNMI---GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I  ++            K+R + AKDI VLVR R +   I            I  V   R
Sbjct: 544  IGQLLCLATEGRAVLADKQRPLLAKDIAVLVRDRNEAAFIKDAL----TRRNIGAVFLSR 599

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +       +L+ +   +    D+      + + L  +S  +I              E 
Sbjct: 600  DNVFATKEASELLHVLAALAQPRDEKRLRAAMATRLMGWSLSEIAAFNQD--------EE 651

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
             ++ A     ++    +    +  +  F         + G K+  ++            L
Sbjct: 652  ARRQALECFERWHQRWQKQGVMPALMAFADDTKLLERLGGDKEADRRLTD------FRHL 705

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQ--YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
             E L     +     + L      L        ++    +  N V+I+T+H +KGLE  +
Sbjct: 706  CELLEQAGASLDGISALLGWFEQALLDPGSDEAMQLRLESEQNLVQIVTIHKSKGLEYGL 765

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
             ++        S      +           +               + ++        E 
Sbjct: 766  CYIPFLSLARDSRGKPSPLLYHKDDRLVWDLLQT-----------DEGVECYDAERLGED 814

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY------------------------- 682
             RLLYV +TR      +   +++   K       Y                         
Sbjct: 815  LRLLYVALTRPVYGCRLGLANHSRMLKAGISSEVYKTALGFLLGIDSKDCDINVLRQAAE 874

Query: 683  ----------------------DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                                   ++  + H        +  N I ++ W    +S    +
Sbjct: 875  RVSSHAHGSEIIGVVDIIQHDLTVLESAQHESTEPPSPRKPNRIGEESWRVGSYSALIAQ 934

Query: 721  NT-PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                 E    I +  +E        +  ++       L          T   S  S  + 
Sbjct: 935  GAGHTEHPGDIARTHEETTAAAIPGAGDESFSVLELPLPDEPEPASQDTGALSRFSFPRG 994

Query: 780  FNRGLIIHKLLQVI--FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPM 836
             N G  +H++L++I    + E   +    +                    +    L++  
Sbjct: 995  ANAGSFMHQVLELIRFDAVAETLPEVLPDAMAHFGIDTQWQPVLDTWYQDLMGAPLQDEK 1054

Query: 837  MTTAMS----CDSYSEVSVSGKINCPKKDII---------------------ISGRIDQI 871
               A+          E+     ++  K   +                     + G ID  
Sbjct: 1055 GQFALGDLSPAQLLVEMEFYLPVSRLKPGALGDLLALYGYRSDFGFDTLNGMLKGFIDLC 1114

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYP------ 916
                   +I +YK++H       +             +  Q  +Y   L           
Sbjct: 1115 FSHDGRFYIADYKSNHLGDTLDHYHRDAMHTAIQDHHYDLQYLLYTLALHRLLRSRLAQY 1174

Query: 917  --NKSL-VCLLIYVS--------EPKVFIIPQNKLNKAFAEI 947
              +K +  C  +++             F  P   L +A   +
Sbjct: 1175 DYDKDVGGCFYLFLRGMSASSPGTGVYFDKPPKLLIQALDAL 1216


>gi|16273231|ref|NP_439472.1| exodeoxyribonuclease V subunit beta [Haemophilus influenzae Rd KW20]
 gi|260581332|ref|ZP_05849148.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae RdAW]
 gi|1169572|sp|P45157|EX5B_HAEIN RecName: Full=Exodeoxyribonuclease V beta chain
 gi|1574781|gb|AAC22966.1| exodeoxyribonuclease V, beta chain (recB) [Haemophilus influenzae Rd
            KW20]
 gi|260091999|gb|EEW75946.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae RdAW]
          Length = 1211

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 140/979 (14%), Positives = 300/979 (30%), Gaps = 142/979 (14%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248  ESADEISAIITNELVKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71   SFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             +FL         +     ++    +P         +     +       K+        
Sbjct: 308  DYFLQSSIEKNCEESTDKNKDKKPATPFYSPIFADLEKRVNALMTPDLLSKL-----TLY 362

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               + L     + K  +    F+DL+    + L+       +   I  +    +IDE QD
Sbjct: 363  HYRQGLQQKLLDYKLNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAMIDEFQD 421

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T   Q+ +   +  D                +GD KQ+IY F GA+    L+     Q R
Sbjct: 422  TDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSR 475

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                        L  ++RS   ++  V+ +F  P++         T +  R         
Sbjct: 476  FE----------LTKNYRSEKHLVDGVNALFDFPQSPFIYQNIKFTAVDSR--------- 516

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-SNG 366
                + +    + +  P    + +  D + +   A I A  I + + +      +F +  
Sbjct: 517  ---DDHLRFYLNGKVEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAAENQAVFQNED 573

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              + +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+L  + +
Sbjct: 574  TYKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKELAWVLK 630

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
              L+   +   +  + + LF  +  DI +I           E   +      +++Q   +
Sbjct: 631  ACLNVA-ERPILNAIATALFGLNAADIHQIQQN--------EADWQRWADSFAQYQQTWQ 681

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                L  + Q          +L    G +             L E L       ++  + 
Sbjct: 682  RQGILAMLHQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATLHESEAAL 735

Query: 547  LQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L     +++ +     +    +    V+I+T+H +KGLE  +V+L    +     K   K
Sbjct: 736  LSWFEKQIQGEARQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLAA---PSKDPSK 792

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662
             +I    + +    +W  ++++ N +         + T  E  RLLYV +TRA  Q+   
Sbjct: 793  KYINIYYSKERDETLWDIENRNLNALC--------EETFAEELRLLYVALTRAKYQMAFA 844

Query: 663  --------------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-- 706
                          ++ +         S+ +    ++       +   +I    ++    
Sbjct: 845  LPAQFDKKWNALHYVLSQGEIGKEINLSDSKDTETLLQTFKEKMQDNVEICTKPNLEALP 904

Query: 707  --------DEWIAYEWS---THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                    D++ A E++         T     E   +  +           + +D  +  
Sbjct: 905  TLSINTKNDDFKASEFTGNIEQDWRITSFTSIEQAHRRQNYFTESAGKKHAVFDDAKDYD 964

Query: 756  ILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
              N   I T      ES  L   +    G  +H+  +  +       +        + + 
Sbjct: 965  SQNAIEISTALLNENESNILDLPRGKQVGTALHRHFENCYFSDLANTEEIDK---LRQSL 1021

Query: 815  LWPAKEYKNLLLSITRLLENPM-------MTTAMSCDSYSEVSV---------------- 851
                   ++L   + ++   P+       +    + D   E+                  
Sbjct: 1022 QLDETFTESLQNWLQQISHTPLSNEIGIALADLANKDCIKEMPFYLAIREHFDVEAFNHT 1081

Query: 852  --------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIE 894
                    S  +   +   ++ G ID +       ++ +YK++              + E
Sbjct: 1082 LKAHHHLPSESLQFEQIQGMVRGSIDLVFRHNGKYYLVDYKSNFLGSTLADYNQEALKKE 1141

Query: 895  HIPYTHIAQLSIYEKILKD 913
             +   +  Q  IY   L  
Sbjct: 1142 MLHSHYDWQYLIYTLALHR 1160


>gi|171057030|ref|YP_001789379.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
 gi|170774475|gb|ACB32614.1| UvrD/REP helicase [Leptothrix cholodnii SP-6]
          Length = 687

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 102/596 (17%), Positives = 193/596 (32%), Gaps = 121/596 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y E       +DF+DLI     LL+  + +   R K  +++ H+L+DE QDT+  
Sbjct: 167 RVMKLYHERLAAYQAVDFDDLIGLPLKLLQTNEAA---RLKWRRQLRHVLVDEYQDTNAT 223

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q++V++ +                  AVGD+ QSIY + GA  + + R  +         
Sbjct: 224 QYDVLKEIVG----------PDGVFTAVGDDDQSIYGWRGATIENLKRLPQDYPT----- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RSTA IL   + V ++                             LW
Sbjct: 269 ---LKVIPLEQNYRSTAAILNAANNVIALNPKIFQKK---------------------LW 304

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +      +                +       A R    I  +    T    G     
Sbjct: 305 SDLGEGEPVRLV--------------ECDQEEHEAERAVARIQGIRANATGAYTGTT--- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             KD  +L R    +  +    R      +I    +      D   IKDL A  R +++Q
Sbjct: 348 DWKDFAILYRANHLSRKLEEALR----KAQIPYKVSGGQSYFDRAEIKDLCAWLRLLVNQ 403

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFANCGIS------KFQHV 484
           +DD +F+  + +P        +  +     + + +++E + K +                
Sbjct: 404 DDDPAFLRAVTTPKRGIGHTTLGALGEFAGKWKVSLFEALFKESLAAALSAKAIGSLHEF 463

Query: 485 IKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNF 535
            +Y+++L H A+     +         L      Q       NE       + + +F+++
Sbjct: 464 GRYVNDLEHRARHTVGAEEAKPMLMEWLKDIGYEQFLYDGEENEKVAAARWNNVVDFVDW 523

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSA----------NHNEVRIMTVHTAKGLES 585
             +       +      E+E+          +            + V + T+H +KGLE 
Sbjct: 524 IAKRCGGQVEADGSAQVEIERKSVLDVAQTISVILSLAERGDEQDMVTLSTLHASKGLEW 583

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           P V LV         +                                   + +     E
Sbjct: 584 PHVVLVSINEGTLPFQRD--------------------------------EEEMTAERLE 611

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           E  RL+YVG+TRA + L++         ++  +      + +   ++  VK+    
Sbjct: 612 EERRLMYVGITRARNTLLVSTLLRQKRGREVRKALPSRFIAEMKLDERTVKEDPRE 667


>gi|239500909|ref|ZP_04660219.1| exonuclease V, beta chain [Acinetobacter baumannii AB900]
          Length = 1232

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 125/920 (13%), Positives = 261/920 (28%), Gaps = 138/920 (15%)

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
            L  +   +K               E++++         ++F+   ++        L   +
Sbjct: 311  LADQKVFKKCPAEISDGFYQHPCIEQIQQLFGVLKNYAEQFDQLHIYLKAY----LCVEV 366

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                 +  +      F   I   +  LK  +        +      IL+DE QDT+  Q 
Sbjct: 367  KKRLPQVLQNKGETTFSQQIRTLSQALKG-EQGQRFAVFVQARYPLILVDEFQDTNQDQD 425

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +++ S+                +  VGD KQ+IY F G +    L   +  Q +      
Sbjct: 426  DMLASIWR-----HPERYQKGCMIMVGDRKQAIYGFRGGDMLTFLNAYKDIQAKH----- 475

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                 +L  + RS AD++ VVD +F    +           +++   R G          
Sbjct: 476  -GREYKLIHNHRSVADLVEVVDALFQRQIDFGE-------QVQYDPIRAGT------RPH 521

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-----FSNGKK 368
             V    +Q NP    W    D   +       A+++A+ I +++            + + 
Sbjct: 522  PVLIDQNQPNPHPLRWLMLKDKETE-------AQQVAWKIRDLLNQSHAGQLYFQKDAQT 574

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            + +   DI VL R            +F      I V    +  + D    +D+ AL   I
Sbjct: 575  QTLNEDDIAVLSRNHDGL----DKVQFELERLGIRVNRPSKRSVFDCTIAQDVGALLTAI 630

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L   D+      L S LF      + ++                            +   
Sbjct: 631  LHPYDEAKVKRALISRLFAMDLKQLLQLEQ------------------TAEGLSQFMTGF 672

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYS 545
              +  +         +   L      +  ++    +       L        ++ +    
Sbjct: 673  DTIRELWSAQGFLVAWQQCLNQFGIWKNLVAVQSKDNERVVVNLRHLTEILSQHSEKYQG 732

Query: 546  SLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +       L+Q    + R        ++   V++MT+H +KGLE  +VFL+        +
Sbjct: 733  AQNLYYWYLKQLQSPLDREWELERRLSSEAGVQLMTIHQSKGLEFKIVFLLGADKPFREN 792

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV--SDLIKHLKKSTQEEYNRLLYVGMTRA 658
                          +    +        +        +K  ++    E NRL YV +TRA
Sbjct: 793  NKTLNFSTQDITVPESAQTLTQRVVAIADKTYLNETELKQHEERALAEQNRLWYVALTRA 852

Query: 659  SDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            S ++   +      S    +  +   +        DE + +               E   
Sbjct: 853  SHRVYALLQDTDGKSVSGLAFWKNRAEPFQHRCCTDEIILEQPPAARHLNQHINIIEIQA 912

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID------TKGKTNL 770
             H  +               Q +  K+ + +    +   +L    +D      T     +
Sbjct: 913  QHFPDQRFYSRGKTSFSYLAQHLRHKVGTDLLASQSHEAVLAEDELDQVISVETATAQPI 972

Query: 771  ESLLS-DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP------------ 817
              + S   +    G  +H++ + I      +  + I      +                 
Sbjct: 973  SWIKSNFPRGTLAGNFLHEIFEHIDFQCSDEWVSEIRRRFKNDYSSLWQDLLIKYQESFP 1032

Query: 818  -AKEYK-----NLLLSITRLLENP-----MMTTAMSCDSYSEVSVSGKINCPK------- 859
              +E +      +   +  +L  P      +    +    SE      ++          
Sbjct: 1033 EEQEAEYSIYHAVAEWLQEILSTPLYQGFRLNQLQAEHYLSECPFYLALSDRVLAMKRIQ 1092

Query: 860  -----------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---- 898
                                 ++G ID +    Q   I +YK+++      ++       
Sbjct: 1093 QLFAEYGMEMPELLEARSARYLNGSIDLVYFDGQRYHIADYKSNYLGENLADYSVESIAQ 1152

Query: 899  -----THIAQLSIYEKILKD 913
                 ++  Q  +Y   L  
Sbjct: 1153 SMSLASYWLQAGLYLVALHR 1172


>gi|261856131|ref|YP_003263414.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
 gi|261836600|gb|ACX96367.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2]
          Length = 688

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 117/733 (15%), Positives = 232/733 (31%), Gaps = 140/733 (19%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           + E++ +    LP  +   +N     ++          A  L+        ++  +L  S
Sbjct: 66  AKEMVARTAERLPPERRRGLNISTFHTLGLNFIRREYAALGLRAGFTVFDSDDSLALFKS 125

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L      +  I  +    +    K  L+  Q  + + ++        + T A      
Sbjct: 126 --LIGHSEYKDVIEPKAAQWQISQWKNDLRTPQSCYEQAKNEGWD----EETRAL----A 175

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+        LDF+DLI    +LL+     A +R +    + ++L+DE QDT+  
Sbjct: 176 GLFDQYQRQLTACNALDFDDLIGRPVELLQSD---AAVRERWQARVRYLLVDEYQDTNTT 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E++R L                L AVGD+ QSIY++ GA+P+ + R            
Sbjct: 233 QYELVRLLVGKIGA----------LTAVGDDHQSIYAWRGAKPENLNRLADDFPN----- 277

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  ++RS   +L   + + ++          S             +G  +  
Sbjct: 278 ---LHRIKLEQNYRSVNSVLKAANHLIALDTTTASKQLWS------------DIGMGEPH 322

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +V+                             A RIA  I              +   
Sbjct: 323 RVIVAATAED-----------------------EAERIATEI---------LHRHFRAQT 350

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + +D  VL R      LI    R L     I           +   IKD M+  + +++ 
Sbjct: 351 EYRDFAVLFRGNHQARLIEQALRKL----NIPYSLTGGQSFFERAEIKDAMSYLKLLVNP 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHV 484
           +DD +F+ ++ +P        I K+    R    +++   +       F N    +    
Sbjct: 407 DDDAAFLRVVNTPRREIGPTTIEKLGGFARERRSSLFAAARSIGIQSVFDNRAADRLNRF 466

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRN 539
             ++  +       +  D    +  A         +       +     ++E+L++  + 
Sbjct: 467 CDWLDGIRAQPDRDAI-DVIQQVFDAIDYPAYLREQESTPKAADRRWQNVEEWLDWLAKI 525

Query: 540 ------------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
                       E  +   L  L   +       ++    + N V ++T+H AKGLE   
Sbjct: 526 SDTQVEAESEGGESATKMDLPALAQRMTLLGILDQQTREKDSNAVALLTLHAAKGLEFGH 585

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VF+      +  H+                                       ++   E 
Sbjct: 586 VFMAGMEEDILPHRDC----------------------------------IEDEARLAEE 611

Query: 648 NRLLYVGMTRASDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            RL +VG+TRA   L   + K      E K  + + +     +     + + I+    ++
Sbjct: 612 RRLCFVGITRARLSLTFTLTKRRRRYGEWKDTEPSRFLDDIPADLLQWQGEGIEQPKEVS 671

Query: 706 KDEWIAYEWSTHH 718
           + +   +      
Sbjct: 672 QAQGREHLAGIRA 684


>gi|296127434|ref|YP_003634686.1| Exodeoxyribonuclease V [Brachyspira murdochii DSM 12563]
 gi|296019250|gb|ADG72487.1| Exodeoxyribonuclease V [Brachyspira murdochii DSM 12563]
          Length = 1124

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 131/896 (14%), Positives = 288/896 (32%), Gaps = 121/896 (13%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
              ++ +K  ++ + K+    +  +  +  +  +   K    H+EE KK   V  +ED++ 
Sbjct: 286  AFRDGVKSLKEIYPKLFHYIDIERNKEKYITVIRFIKDTYIHFEEVKKDIGVYSYEDIMY 345

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               + L+  D+S     +I   I+ +++DE QDTS +Q+  I  +            + +
Sbjct: 346  KAIEALEDNDISK----RIRDNISTLILDEAQDTSYLQFSFINLIVFGKKDITPNDKNQK 401

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             L  VGD+KQSIY F  A  +  +  K               +  L  ++RS + ++   
Sbjct: 402  KLMIVGDKKQSIYRFRNANFRAFIEAKNNFNNY---------VKYLKNNYRSNSMLIEFF 452

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            +  F                      +   +  ++      S+     +          +
Sbjct: 453  NDFFENIV-----------------FKNDDIDYIEEDNLQYSKESKDKSVSLLILNRNIE 495

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +   + +        +Y+I+            K      K++++L++  K    +    +
Sbjct: 496  NENIDLNIEKRTELESYSIA--------KYIKKYYNNNYKNVVILLQTFK---RLNVYLK 544

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI- 453
             L +D++I    +      +   I  +     +++   D      +L+S LF+   +++ 
Sbjct: 545  AL-SDFQIPYYIDGGNGFYEREEIVLIKTFLEYLIL-RDHAKLPSLLRSELFDIDINNLS 602

Query: 454  ----------FKICTQRHETETVYEYIQKFANCGISK-----FQHVIKYIHELIHIAQFC 498
                        I     +     +  +K +    SK      +   + ++ +       
Sbjct: 603  DFLFSLFINGLDINDYFPKNINNEDNYKKISEIASSKSYYAQLKEAKELLNSIESKVSMM 662

Query: 499  SPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
            +  D    I          ++    E     +++        E  + +++ + +  L+  
Sbjct: 663  NASDIIETICIDTNFYNYLMTMEDAELSYANIEKLKKIADEFENQTGNNVYDFVLNLQNA 722

Query: 558  PPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                  +     + + V+IMT+H +KGLE   VFL   G  +                  
Sbjct: 723  GGNEAYSSIPKLSVDAVKIMTIHKSKGLEFENVFLAGMGHYMSPKYKDFDFIEDYPF--- 779

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-- 673
              +P++        +       +  +S + E  RLLYV +TRAS+ LI+    +  N   
Sbjct: 780  IRLPVYEKNKYYTLDFSFFDKSYNAESEEAEKKRLLYVALTRASNNLILSGEHSRGNSYM 839

Query: 674  --------------------------------KKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                                                  ++   +     +     +  + 
Sbjct: 840  SYINNYISYDAKKHHTDIKSEENDDFVIENSLTNKFINSYLYGIAFEPKDIVNNTEADIE 899

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
            + + K E I    +    +           +  +            +  +     +N   
Sbjct: 900  DMVKKMESIKENKNELKAKTISNIMPSLRNKYDNHYSDFDISSLLDRKILELENYINNDE 959

Query: 762  IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-----YCTKNAKLW 816
             D   +  L     D      G+IIHK+L+        K K+             N +  
Sbjct: 960  EDYDDENVLFISFKD-----LGIIIHKMLEHFDYNKYLKEKDLYLEKVKTFVLKSNIQYN 1014

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-- 874
              +   +L  +  +L EN  +   +  D    VS          +   +G+ID   I+  
Sbjct: 1015 QKQLSDSLDTAFKKLFENEHINNILKGDEEI-VSREHTFQDYDGEYRTTGKID--IITKN 1071

Query: 875  -QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP--NKSLVCLLIYV 927
                 FI +YK    V +  E     +  QL  Y+ + + S+      +   +I++
Sbjct: 1072 KNGEYFILDYK----VSKFSEESINFYKPQLESYKYMFQKSFNIDESKINTGIIFL 1123


>gi|319776263|ref|YP_004138751.1| Exodeoxyribonuclease V subunit beta [Haemophilus influenzae F3047]
 gi|317450854|emb|CBY87078.1| Exodeoxyribonuclease V beta chain [Haemophilus influenzae F3047]
          Length = 1211

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 152/982 (15%), Positives = 298/982 (30%), Gaps = 148/982 (15%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248  ESADEISAIITNELEKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
             +FL           T +   K P                 ++     M    L+ LTL 
Sbjct: 308  DYFLQSSIEKNCEESTDKNKDKKPA-----TPFYSPIFAELEKRVNALMTPDLLSKLTLY 362

Query: 131  KYLNAHYEEAKKKNCVLD---------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                 HY +  ++  +LD         F+DL+    + L+       +   I  +    +
Sbjct: 363  -----HYRQGLQQK-LLDYKLNHQEKSFDDLLRLFCEALQG-AQGDELAEMIRFQYPFAM 415

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   Q+ +   +  D                +GD KQ+IY F GA+    L+  
Sbjct: 416  IDEFQDTDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKAS 469

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               Q R            L  ++RS   ++  V+ +F  P++       + T +  R   
Sbjct: 470  DEAQSRFE----------LTKNYRSEKHLVDGVNALFDFPQSPFIYQNINFTAVDSR--- 516

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                      + +    + +  P    + +  D + +   A I A  I + + +      
Sbjct: 517  ---------DDHLRFYLNGKAEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAAENQA 567

Query: 362  IF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +F +    + +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+
Sbjct: 568  VFQNEDTCKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKE 624

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L  + +  L+   +   +  + + LF  +  DI +I           E   +      ++
Sbjct: 625  LAWVLKACLNVA-ERPILNAIATALFGLNAADIHQIQQN--------EADWQRWADSFAQ 675

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +Q   +    L  + Q          +L    G +             L E L       
Sbjct: 676  YQQTWQRQGILAMLHQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATIH 729

Query: 541  QNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++  + L     +++ +     +    +    V+I+T+H +KGLE  +V+L         
Sbjct: 730  ESEAALLSWFEKQIQGEGRQEAQIRLESERQLVKIVTIHKSKGLEYDLVWLPFLA-APSK 788

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                K ++I  S   D  +     ++          +  L + T  E  RL YV +TRA 
Sbjct: 789  DPSKKDINIYYSKERDETLWDIENRN----------LNALCEETFAEELRLFYVALTRAK 838

Query: 660  DQL----------------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             Q+                 +        E   +     + +  +F    R      T  
Sbjct: 839  YQMAFALPAQFDKKWNALHYVLSQGEIGKEINLSDSKDTETLLQAFKEKMRDNVEICTKP 898

Query: 704  INK-----------DEWIAYEWS---THHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
              +           D++ A E++         T     E   +  +           + +
Sbjct: 899  NLEALPTLSINTKNDDFKAAEFTGNIEQDWRITSFTSIEQGHRRQNYFTESAGKKHAVFD 958

Query: 750  DINEPYILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            D  +    N   I T   +  ES  L   +    G  +H+  +  +       +      
Sbjct: 959  DAKDYDSQNSIEISTALLSENESNILDLPRGKQVGTALHRHFENCYFSDLANTEEIDKLR 1018

Query: 809  CTKNAKLWPAKEYKNLLLSITRL-LENP---MMTTAMSCDSYSEVSV------------- 851
             +        +  +N L  I+   L N     +    + D   E+               
Sbjct: 1019 QSLQLDETFTEPLQNWLQQISHTPLSNEIGIALADLANKDCIKEMLFYLAIREHFDVGAF 1078

Query: 852  -----------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH----HVPQEIEHI 896
                       S  +   +   ++ G ID +       ++ +YK++           E +
Sbjct: 1079 NRALKAHHHLPSEPLQFEQIQGMVRGSIDLVFRHNGKYYLVDYKSNFLGSILPNYNQEAL 1138

Query: 897  PY-----THIAQLSIYEKILKD 913
                    +  Q  IY   L  
Sbjct: 1139 KKEMLHSHYDWQYLIYTLALHR 1160


>gi|331090972|ref|ZP_08339814.1| hypothetical protein HMPREF9477_00457 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405194|gb|EGG84730.1| hypothetical protein HMPREF9477_00457 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 611

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 110/648 (16%), Positives = 208/648 (32%), Gaps = 125/648 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T       + + +     E  FS      L ++      +   +   +  D K+ L+   
Sbjct: 82  TFHGIYYGILKWAYGLSAENIFSEEEKIRLLKE-----ILEHTDAEIEVDDEKDFLEGIT 136

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
            E   I++     K F+S     T+ + +   YE  + +   LDF+D+++  +DL     
Sbjct: 137 GEISCIKNNQLEIKEFQSVYCPSTVFREIYYTYERERNRRKKLDFDDMLVLCHDLF---I 193

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               I  K  +   +ILIDE QD + +Q++VIR L                LF VGD+ Q
Sbjct: 194 KRPDILEKWQERYKYILIDEFQDINKVQYDVIRMLAL----------PQNNLFIVGDDDQ 243

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY F GA P+ +L  ++               + L +++RST  I+    K+     N 
Sbjct: 244 SIYKFRGARPEIMLGFEKDYPN--------AKKVLLDINYRSTKAIVNGAKKIIQKNRNR 295

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
              +                               S             +   +      
Sbjct: 296 YVKNII----------------------------TSNEQGADIHVQEVRNLSEES----- 322

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
               +   I   +             + A +I VL R   +      +      +Y +  
Sbjct: 323 --EYVLNEIREEMKKG----------VPASEIAVLFRTNMEPR----MLAETFMEYNLPF 366

Query: 405 VGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +    L +H   ++  A  R  + + +   F+ ++  P+   S   + K        
Sbjct: 367 QMKEHLPNLYEHFIGRNFCAYMRMAVGKRERKDFLEVMNRPVRYISRSSVEKAEVSFES- 425

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                   +   C        I  +   + I +  +P+     I         F+  +  
Sbjct: 426 -------LRRFYCDKEWLLDRIDQLDVDLRIMKTMTPYAAIQYIRKKIGY-DDFLKDYAY 477

Query: 524 EVIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIK---RAHSANHNEVRIMTVH 578
                +++        +     Y ++++  S +E+Y   +K   +   +N N V  +T+H
Sbjct: 478 TRKIKVEDLYEIANEIQTRAKEYKTIEDWFSYIEKYTEELKKRSKQTESNPNAVTFLTMH 537

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE   VF+++    +                                       K 
Sbjct: 538 SAKGLEFHTVFIIEANEDICP-----------------------------------YKKA 562

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                 EE  R+ YV MTRA  +L I      + +     R   D+++
Sbjct: 563 EVVEDMEEERRMFYVAMTRAKKKLYISYVRERNGKTMLPSRFVNDLLF 610


>gi|212639014|ref|YP_002315534.1| Superfamily I helicase domain and RecB family exonuclease domain
           [Anoxybacillus flavithermus WK1]
 gi|212560494|gb|ACJ33549.1| Superfamily I helicase domain and RecB family exonuclease domain
           [Anoxybacillus flavithermus WK1]
          Length = 965

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 111/860 (12%), Positives = 244/860 (28%), Gaps = 158/860 (18%)

Query: 106 EFIKIRDRFNTYKMFKSTLA-SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
              K+ +     +  +S+    + +   +   Y +   +   LDF  +   T  LLK   
Sbjct: 156 WVNKLTEELVDIRKLESSQDNVIRILAEIYKTYLDILARENALDFSTIQSETVHLLKNNP 215

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +  K+ ++I++++IDE QDT+ +Q E+I  L  +           + +  VGD+ Q
Sbjct: 216 D---VLTKLQEKIHYLMIDEYQDTNTVQEELIFLLAGN----------RQNICVVGDDDQ 262

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            +Y F GA  + +L   +   K           ++L  ++RS   I+   ++     +N 
Sbjct: 263 GLYRFRGATIRNILEFPKKFPK------GVCQKVKLSTNYRSHPTIIEFYNRWMEE-KNW 315

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +    +     +    R G+      +  + S          ++W               
Sbjct: 316 RDKQGNIFRYEKEIKPREGE------FPNIKSVVKVSSTGSIDNWF-------------- 355

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
                   I   +    +    K ++     +  L +  K+  +             I V
Sbjct: 356 ------NEIYEFL----MMFKNKGQLTDWNQVAFLFKSVKNPKV--KALADFLESKGIPV 403

Query: 405 VGNDRFILTDHLAIKDLMALGRFI---------LSQEDDLSFVCMLKSPLFNFSED---- 451
                    D   I+ L+    F+            E +L       + L  F       
Sbjct: 404 YSPRSNAFFDREEIRLLIGAYMFMFPQISKIRKWDDEVELDIWNYCDNCLREFGNQLRKE 463

Query: 452 ---DIFKICTQRHETETVYEYIQKFANC-------GISKFQHVIKYIHELIHIAQFCSPH 501
              ++     ++ +  +  +    +              FQ  I   +  ++ ++     
Sbjct: 464 ENKELALFVVKKAKEHSSLQENTDYGFSGLFYQLLQFPLFQKFIDRYNGSVYDSREARNV 523

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
             F+ +L   +            + + L  F N  LR  Q+                   
Sbjct: 524 ALFSQLLSKYEYLHNLSVLTPKNLENHLKMFFNDYLRYLQSGG------------INEYE 571

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             +  A    V  +T+H +KG+E P+V +    S          + +     +       
Sbjct: 572 DDSEYAPSGCVSFLTIHQSKGMEFPIVIVGSLDSTPTKQYSDLDIILQNEYYNKEPF--- 628

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                          + ++K+   ++ RL Y   +RA + L +      +  +       
Sbjct: 629 ---------------EPIEKTKYYDFWRLYYTAFSRAQNVLALTCLEQKAQGRGQRNVPT 673

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
            +                         W   +      E       +          +  
Sbjct: 674 KEFADIYS---------------TLPSWRDIDLFKIKLEKVKDVNIKRQYSFTSHISLFD 718

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-------- 793
                 K                     LE       T   G ++H+ ++ I        
Sbjct: 719 MCALQYKFFKE-----------------LEFAPVRQGTTVFGSLVHQTIEDIHKAVLRGE 761

Query: 794 -FTLPEHKRKNFITS----YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
              +   K + +  +       KN         +  L  I   +EN         ++   
Sbjct: 762 EHKITPEKVEEWFHANYMYLVQKNRVYLMETTKEAALQQIKNYVENQKRNWYKIKEA--- 818

Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP-QEIEHIPYTHIAQLSIY 907
                 ++  K + I++G ID +      + I ++K+               +  QL +Y
Sbjct: 819 ---EVDVSLVKNNYILNGTIDLVQGEGDTVEIIDFKSEKKPNLLNERERIEHYRKQLEVY 875

Query: 908 EKILKDSYPNKSLVCLLIYV 927
             ++++    +     L Y 
Sbjct: 876 AHLVEERMGLEVSKMHLYYT 895


>gi|161525258|ref|YP_001580270.1| exodeoxyribonuclease V subunit beta [Burkholderia multivorans ATCC
            17616]
 gi|189350004|ref|YP_001945632.1| exodeoxyribonuclease V subunit beta [Burkholderia multivorans ATCC
            17616]
 gi|160342687|gb|ABX15773.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans ATCC
            17616]
 gi|189334026|dbj|BAG43096.1| exodeoxyribonuclease V beta subunit [Burkholderia multivorans ATCC
            17616]
          Length = 1236

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 127/977 (12%), Positives = 265/977 (27%), Gaps = 123/977 (12%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             LW      +  + +    ++   +      A+            +  + L    L    
Sbjct: 240  RLWEAERDAIDALLRAAQPALNQRSHKPDAIAEAFAAWGAHFAQRDAAAALPKAALKLTR 299

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T  +    +          +     +              +        T    L     
Sbjct: 300  TALEKATKKGGATPEHPFFDVADALEAAVAAADAAQRARWLALIAEWLDTAPAELAER-- 357

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 358  --KRTRRVVSFDDLLANLYHALHAHP---WLADTLRARYPAALIDEFQDTDPLQFAIFDR 412

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 413  IFA----------PAGPLFLVGDPKQAIYSFRAADLHTYLAARAR----------ASACY 452

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   ++ F     A  L       +R  + R       +         
Sbjct: 453  TLAVNQRSTPAIVEACNRFFQSNPRAFVLDGLDYYPVRAGT-RTRAPFADETDPAPSGDF 511

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                 P  +      D+  Q + A             M G     +   +  +   DI V
Sbjct: 512  RIWMLPGGDGTLLKRDAHAQAAQACAAEIA-----RLMRGARDGHARLGETPLSPGDIAV 566

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            LV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D     
Sbjct: 567  LVQTHRQGSLVKRVLAA----WGIGSVELAQASVFSTIDAEQLERVLAAIDAPGDLRRLR 622

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
              L S  F      ++++     + +  ++         +S  +   +Y           
Sbjct: 623  AALASDWFGLDAGALWRMEQ--GDADAQHDAGATDTADAMSWVERFSRYRLLWRERGFAV 680

Query: 499  SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-ELEQY 557
                F   +  A++             I+ L E        +     +L+ L +  L+  
Sbjct: 681  MWRTFARELRIAERLMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGG 740

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                +    ++ N V+I+TVH +KGLE  +VF                +      +D+ G
Sbjct: 741  GEEAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPPASALPDAREYHDEAG 800

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKK 675
              +        +   +   +   +    E  RL+YV +TRA  +  +    + ++ + ++
Sbjct: 801  DAVLHYGC--DDEAAAHAARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRSTRE 858

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE------- 728
            + +     +V  +  + +        ++     W A           P            
Sbjct: 859  ARRSVLNWLVAGAGRSFDAWLDEPPDDAELDAAWRALAGGPISVAPLPAPARRERLLAGH 918

Query: 729  ---------------------------TIKQLMDEQKIPKKLFSPIKNDINEPYILNP-- 759
                                       T     +E  +       ++ D +    L P  
Sbjct: 919  DVSQTLAARHATCVLRDAWRMASFSSLTASIAREEAGVAAVPDDELRPDHDALAALVPGA 978

Query: 760  ---STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
               +      +   + +L   +    G  +H+L ++                        
Sbjct: 979  DIDAAATVAPEPPDDDILVFPRGAAAGECLHRLFELSRFAEPASWPAAARGALHDRPVEA 1038

Query: 817  PAKEYKNLLLSITRLLEN---------PMMTTAMSCDSYSEVSVSGKINCPKKDII---- 863
                 + L   + RL+++           +         +E+             +    
Sbjct: 1039 EPALAERLPAMMVRLVDDVVHTELVPGLRLADLDPAKRLNEMGFLFPAPSLDLGALRRLL 1098

Query: 864  ------------------ISGRIDQISISQQNIFIFEYKTHH---------HVPQEIEHI 896
                              I G ID I       +I ++K++H             +    
Sbjct: 1099 VAHGYPDVALDAGTLAGFIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGPQALDAAMA 1158

Query: 897  PYTHIAQLSIYEKILKD 913
             + +  Q  +Y   L  
Sbjct: 1159 DHAYHLQALLYTVALHR 1175


>gi|167627907|ref|YP_001678407.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597908|gb|ABZ87906.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 671

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 109/617 (17%), Positives = 204/617 (33%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    +        A ++   Y++  K     DF+DLI     L K  
Sbjct: 138 QSKISFWKSALLTPDEIQPKDDLEEQAAFIYKEYQKYLKSYNSFDFDDLIFQPIQLFKNY 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT+                 VGD+ 
Sbjct: 198 ---SSIQKLWSDKFRYILIDEYQDTNESQYQLLKYLTQ----------GKNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +           +   +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------KDLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW    S  D     +  S T+  D         
Sbjct: 297 IFDKK---------------------LW----SNKDYGEQIKVISLTNDEDE-------- 323

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ I   I         F +  K   +  D  +L+R      L+    +  K    I 
Sbjct: 324 --AQFITSDI---------FFDRVKTKSKNSDYAILIRSNYQAYLLERYMQMHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHE 462
              +          IKD+++  R I++ +DD +F+ ++ +P        I K+       
Sbjct: 369 YTISGGSSFFSKSEIKDIISYLRLIVNPDDDRAFLRIVNTPKREVGSATIHKLGEYASEH 428

Query: 463 TETVYEYIQKFANCGISKF-QHVIKYIHELIHIAQFCSPHDFFTLIL--------GAKKG 513
             + +  +       I  F +  +    +LI   Q           L             
Sbjct: 429 HCSFFHTLYNLEKFEIRDFTKKNLSSFKDLILNTQQEINSSISAQELKNIINNFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N+  SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANVIEVTKWIVNQLEGESYNALESLASVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         +++ + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEEDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQISIPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +   +D      +  
Sbjct: 634 IDELPESDLYWVGTEKE 650


>gi|225570440|ref|ZP_03779465.1| hypothetical protein CLOHYLEM_06540 [Clostridium hylemonae DSM
           15053]
 gi|225160637|gb|EEG73256.1| hypothetical protein CLOHYLEM_06540 [Clostridium hylemonae DSM
           15053]
          Length = 613

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 105/597 (17%), Positives = 198/597 (33%), Gaps = 120/597 (20%)

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
            + K+ LK+   E  KI++     + ++S        + +   YE+AKKK   +DFED++
Sbjct: 127 EEEKDYLKELAAEIGKIKNDRLDIRAYESERFGKERFQSIYRDYEDAKKKWNKIDFEDML 186

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +    L  +      +  K  ++  +IL+DE QD + +Q++V+R L              
Sbjct: 187 LLCCRLFLE---RPDVLEKWQRKFRYILVDEFQDINQVQYDVLRMLAA----------PE 233

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             LF VGD+ QSIY F GA P  +   K+   +           I L +++RST+ I+  
Sbjct: 234 DNLFVVGDDDQSIYGFRGARPGIMAEFKKDYPQAGQ--------ILLDVNYRSTSHIVNG 285

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             +V    +                                 +    +   +        
Sbjct: 286 ALRVIGHNQKRFKK----------------------------AVRSGKKQGETVHVQEVK 317

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           DS+ + +        +   I  ++             +    I VL R   D        
Sbjct: 318 DSVEEGA-------YVVGQIRELVRQG----------VPLSGIAVLYRTNLDAR----AL 356

Query: 394 RFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                +Y+I     +    + DH   +D+ +    +L + +   F+ ++  P      D 
Sbjct: 357 SECLMEYQIPFCMKEYMDNIYDHFIARDISSYFHLVLKEFERTYFLQIVNRPNRYIGRDS 416

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           +          E V     +   C        I  +   I + +  SP+      +    
Sbjct: 417 M--------SGEPVTFESLRRFYCDKQWMMDRIDQMEWDIKMMENKSPYLAIQY-MRKSI 467

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQ--NSYSSLQELISELEQYPP---TIKRAHSA 567
           G  +F+  +        +E        ++      ++ E  + +E+Y       ++    
Sbjct: 468 GYDEFLKDYAAYRQIPAEELFKVLDEIQELSRGSGTIGEWFAHVEKYGAMLKEQRKKSRE 527

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
                 +MT+H +KGLE   VF++     V                              
Sbjct: 528 TKESAALMTMHGSKGLEYDTVFIIQGNEGVVP---------------------------- 559

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                    K   +   EE  RL YV MTRA  +LII      + ++ +  R   ++
Sbjct: 560 -------YKKAKTEDEIEEERRLFYVAMTRAKRKLIISYVKEKNGKEAAPSRFVNEL 609


>gi|261868104|ref|YP_003256026.1| exodeoxyribonuclease V subunit beta [Aggregatibacter
            actinomycetemcomitans D11S-1]
 gi|261413436|gb|ACX82807.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter
            actinomycetemcomitans D11S-1]
          Length = 1221

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 145/986 (14%), Positives = 290/986 (29%), Gaps = 155/986 (15%)

Query: 21   WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
            W      ++ + +    +            ++    ++ + +    +   S         
Sbjct: 247  WLENEADIAQLLETEVNTKYKSAKEQKLNRRSFTSTTRLKWLAMMKAWAESDKADFPGCF 306

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
             +   T    +K  + K+ L       I    +    +   S        + LN    E 
Sbjct: 307  SRFGQTAMNEQKGEEAKDALMHWLFVEIDELLQLAEQQELLSQALWFHYLQMLNTQLVEY 366

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            K  +    F DL+    + L   D + + R  I  +    +IDE QDT  +Q+++   + 
Sbjct: 367  KLNHSEKSFNDLLRLLKEALYHPDNTEFARL-IRYQFPFAMIDEFQDTDAVQYQIFSKIY 425

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
             +         S      +GD KQ+IY F GA+     +  R  Q R            L
Sbjct: 426  VEQPQTDAQSDSG--FIMIGDPKQAIYKFRGADIFTYFQAARQAQHRFN----------L 473

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              ++RS   ++  V+++F   E    L +D        S+R                   
Sbjct: 474  AKNYRSHQHVVDCVNRLFDFSEQPPFLYKDIQ--FMPVSARTDHP---------QFWLSG 522

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD------TIFSNGKKRVIQAK 374
            Q  P    +      + + S    +A+  A +I   + +           +G K+ ++ +
Sbjct: 523  QPEPAVRFY------VDEASVKENIAKACAVSIQYWLQSAVENSAVFRLDDGDKKTLKPE 576

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
             I VLVR RK+  L+    R L      SV  ++   + D  A KDL+ +    L+   +
Sbjct: 577  SIAVLVRSRKEAELVKNELRHLGIA---SVYLSEDSNVFDSSAAKDLLMILTACLNPFYE 633

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
               +  + + +F  +  DI +I       E   E    +        Q V+  +H+L   
Sbjct: 634  RHILNAIATAIFAQTSADIQRIRMDETRWEHWVEKFIHYQRTWQK--QGVLVMLHQLFQQ 691

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                   +  T  L      ++ ++         L E L       ++  + L+    ++
Sbjct: 692  -------EKITEKLYPTVDGKRLVTDLL-----HLAELLQEAATLNESEAALLRWFEKQI 739

Query: 555  --EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
              E      +    +    V+I+T+H +KGLE  +V+L   G         +   I    
Sbjct: 740  QGENRQKEQQVRLESELRLVKIVTIHKSKGLEYDLVWLPFIGYA----STFRGDRITTYY 795

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
            ++  G  +W                 +++    E  RLLYV +TRA  QL+I        
Sbjct: 796  DETQGAVLWDYDKSHE--------ALVQQEDFAEQLRLLYVALTRAKYQLVIGVPQTFET 847

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
            +  S           +         + L   +            +  +  PL+ +   + 
Sbjct: 848  KWSSLLYVLTHGAIQTREKPNAYDSLPLLEKLVARAPQGSVQIANTADLIPLQLQAHAEA 907

Query: 733  LMDEQKI--------------------------PKKLFSPIKNDINEPYI---------- 756
             +                                 K     ++ ++ P +          
Sbjct: 908  QIPLHAAKFTGNIEQNWTVTSFSAIEAIHQNKAYFKAQQMAESAVDFPSVFDLGKDYDFN 967

Query: 757  --------LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                    +  +  D        S        N G  +H+ L+          ++ I   
Sbjct: 968  EQGQSTESIRETAADESAYPFGYSPFDFPHGINIGTALHRFLEK-TDFDRPLNEDKIQKL 1026

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEVSV--------- 851
            C             +L   I  +L  P         +          E+           
Sbjct: 1027 C--QWLQLEETWLPSLQQWINAILHTPLSTQDSTLQLVNLTRQHCVKEMQFYLKLNQTFD 1084

Query: 852  ---------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH-------- 888
                           S  +       ++ G +D +    +  ++ +YK++          
Sbjct: 1085 VTAFNQTLQQHHHLPSEPLQFEAIKGMLRGFMDLVFYHNEKYYLADYKSNFLGVEAQNYV 1144

Query: 889  -VPQEIEHIPYTHIAQLSIYEKILKD 913
                +   +   +  Q   Y   L  
Sbjct: 1145 GTSLQQAMLTNHYDWQYLFYTLALHR 1170


>gi|126441299|ref|YP_001058429.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 668]
 gi|126220792|gb|ABN84298.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 668]
          Length = 1263

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 125/1002 (12%), Positives = 277/1002 (27%), Gaps = 143/1002 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       + +   R G      L +    
Sbjct: 452  RYTLAVNQRSTPAIVDACNRVFGANPRAFVLDG-----LDYEPVRAGSRVRAPLLDATDP 506

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
               +                 +++         A     M G            + A  I
Sbjct: 507  LAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGAREHAVTLGGEPLAASGI 566

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D   
Sbjct: 567  AVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGDLRR 622

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV---------IKY 487
                L S  F      ++++     E + +    +                      ++ 
Sbjct: 623  LRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGARAASAGAPAPSPADADAMGWVER 682

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNS 543
                  + +       +  + G  +  ++ ++    E      + L E        +   
Sbjct: 683  FSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQPGI 742

Query: 544  YSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF             
Sbjct: 743  APTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPA 802

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
               +      +D+ G  +        +       +   +    E  RL+YV +TRA  + 
Sbjct: 803  GSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVYVALTRAVYRC 860

Query: 663  IICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             +    + ++ + K++ +     +V  +  + +   K    ++   + W A         
Sbjct: 861  YLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPVTLG 920

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--------------- 765
              P+           + +  +      +   +   I + S++ +                
Sbjct: 921  ALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDESGIARAADDE 980

Query: 766  ----------------------------------GKTNLESLLSDNQTFNRGLIIHKLLQ 791
                                               +   + +L+  +    G  +H+LL+
Sbjct: 981  LRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAEDDILAFPRGAAAGECLHRLLE 1040

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAMS 842
            +                  +          + L   +TRL+ +           +     
Sbjct: 1041 LSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELVPGMRLAALDP 1100

Query: 843  CDSYSEVSVSGKINCPKKDII----------------------ISGRIDQISISQQNIFI 880
                +E+           + +                      + G ID I       +I
Sbjct: 1101 ARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDMIVEHDGRFWI 1160

Query: 881  FEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
             ++K++H             +     + +  Q  +Y   L  
Sbjct: 1161 VDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1202


>gi|152974753|ref|YP_001374270.1| UvrD/REP helicase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023505|gb|ABS21275.1| UvrD/REP helicase [Bacillus cytotoxicus NVH 391-98]
          Length = 684

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 105/660 (15%), Positives = 207/660 (31%), Gaps = 122/660 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +  +L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVASLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ +  K  ++        + +   YEE K+K   
Sbjct: 165 ILKELR-LKDAYDAETMLAMISLEKNKLHRPKDVQAKTPVEQEFREVYERYEEVKQKYGY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ +   +I +DE QDTS  Q+E+++ L       
Sbjct: 224 IDFDDILLETFYMLENN---APLLMQLQERFQYIEVDEFQDTSYAQYEIVKLLAA----- 275

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 276 -----PQNNLFIAGDDDQAIYGWRGASHQIILSFPKEFD--------DTTIIALNTNYRS 322

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      R        T+                  
Sbjct: 323 NPFIVGLGNEVIKLNQERFHKELYSVHEEGMRPFYARPATTLD----------------- 365

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I + + +              KD  +L R    +
Sbjct: 366 ------------------EANQILQLIQDKVSSGER---------SYKDFCLLYRTHSVS 398

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R         +   +L +   
Sbjct: 399 R---SLLDQLTIHKVPFIKYGASQSFYEHSLIKPVLDHLRLAYEPFQMEALASILPTMYI 455

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  K         ++  ++    N    + + +   I + I   +   P  
Sbjct: 456 GRDDCLSFIEREKWKYGEGRFPSLLHFLLLNPNLKSFQVKKLNDKI-DFIKFIKELEPKK 514

Query: 503 FFTLILGAKKGRQQFISRFGNEV--------IDVLDEFLNFTLRNEQNSYSSLQELISEL 554
               I+  K    +++                ++L+E +    R   +  + L+ + + +
Sbjct: 515 ALKEIIKGKGKYLEYLQNNDRSSFTMHKDIQEEMLEELIESANRF-TDIPAYLEFVHAAI 573

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +              + V +M++H AKGLE P VFL+     +  H    K         
Sbjct: 574 QNQKEMEALKTKPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHSSSLKD-------- 625

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                             ++          EE  RL+YV +TRA ++L I        +K
Sbjct: 626 ------------------ANDRPTDSSEALEEERRLMYVAITRAKEELYISSPQFFRGKK 667


>gi|289167933|ref|YP_003446202.1| hypothetical protein smi_1090 [Streptococcus mitis B6]
 gi|288907500|emb|CBJ22337.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 1297

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 139/906 (15%), Positives = 281/906 (31%), Gaps = 179/906 (19%)

Query: 62  IEERFSLLSSFFLTQKFT-PQKNIITQEINKKSP---------DLKEKLKKSQDEFIKIR 111
                  L   F   K     K    +EI++            +L  K K ++    K  
Sbjct: 117 RYSAKDQLLELFYKMKRENLNKEDFEKEIDEYFKMIDLSILGDELYSKFKYARKSKDKKV 176

Query: 112 DRFNTYKMFKSTLASLTLAK--YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +    + +    +  L     +   Y     ++   DF+D+I+ T + L++ D     
Sbjct: 177 GDYKDKAINELQENTNKLLAGVDIVEKYSNDISEHNYFDFDDMILWTIEKLEENDD---F 233

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           +  +   I ++ +DE QDTS++Q +++  L +              +F VGD+ QSIY F
Sbjct: 234 QRSVSDTIKYLFVDEFQDTSVVQNKLVDLLVKG--------KDNPNIFVVGDDDQSIYRF 285

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            G     +    +           K + I L  ++RS+  I+    ++ S     + L  
Sbjct: 286 QGVSANNIRDFDKKY---------KPTKIVLDENYRSSQAIIDASRQLISHNPREEKLLI 336

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                                                + +      L   ++A      +
Sbjct: 337 --------------------------------ATGANKDYDYQLPILKSYANAKAEMFGV 364

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I  +I +           +   +I V+  +         + R    D  I V   + 
Sbjct: 365 LKEIKELIDSG----------VSPHEIGVIYGRNSYGEEFAKILR----DNGIFVQMKEN 410

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVC-MLKSPLFNFSEDDIFKICTQRHETETVYE 468
             L      K ++A+ +++     D+  +  ++    F      I  I   + +      
Sbjct: 411 KDLFSEPLFKKIVAILKYLCKPSRDVRELRKIVYFDFFEVELSQIAMIRNLKKD------ 464

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQ----FCSPHDFFTLILGAKKGRQQFISRFGNE 524
                    I     + + +  +         + SP    + +L +    +  +      
Sbjct: 465 -----EKISIPTIAEIDQKLEIIRKKVNKSSKYLSPMYVLSDVLKSLSIDEYIMKSKEKY 519

Query: 525 VI-DVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSAN-----HNEVRIMTV 577
            +  VL+E     L         +++E +++L             +      N V++MT 
Sbjct: 520 HLVSVLNELYKLMLMECHIHPKLTVKEFLNQLSTLEEMGISLPIEDISGSPSNCVQLMTA 579

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE   VF++         +                         +    ++   +
Sbjct: 580 HGSKGLEFDHVFIMKCNDGKKKSEAWPGGE-------------NNSGRFAYPPSLNGKDE 626

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           +  +  +EE  RL YV MTRA   L +    +++          + +       DE    
Sbjct: 627 NESQLKEEENRRLFYVAMTRAKKVLHLTYSDDSTKT--------HFINEFEEFIDEVDVT 678

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
               +  + D+ +  ++S +       E   ++  L    K P                 
Sbjct: 679 ESFDDFQSVDKVVIPKFSNNVINEIFDELSLSVSTLNAFLKCP----------------- 721

Query: 758 NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI----------------FTLPEHKR 801
               +       L+     N+    G IIH++L+ I                   PE   
Sbjct: 722 ----LSFYFNKGLKLPSETNEAMVFGSIIHEVLEKIYISVDGSQSSELTAKTVLSPEEAL 777

Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT-AMSCDSYS-EVSVSG------ 853
           K F T +  K+ +L   +  K+      +++EN       +     + EV + G      
Sbjct: 778 KLFETVFEEKSYQLTSDRIKKDDYARGKKIIENLYKKAGYLKDGVVAVEVPIQGIRLGDI 837

Query: 854 ---KINC-PKKDIIISGRIDQISISQQNIFIFEYKTHH--------HVPQEIEHIPYTHI 901
               ++     DI I+G+ID+I      + + +YKT +          P E E +   + 
Sbjct: 838 LNTTVDLSEVSDIEINGKIDKIECDGNIVRLVDYKTGNFENAKKKLVAPSEKEPLGGDYW 897

Query: 902 AQLSIY 907
            Q   Y
Sbjct: 898 RQAVFY 903



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 13/167 (7%)

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFIT----SYCTKNAKLWPAKEYKNLLLSITRLL 832
                  G  IH+ ++ I    + + ++ I     S  +   ++      + L     +LL
Sbjct: 1064 PTGPVFGTAIHETMEKI-YKEDLQLEDAIEFYDSSLYSHQEEIIDTMPVEELKEYGHKLL 1122

Query: 833  ENPMMTTAMSCDSYSE-VSVSGKINCP-KKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
             N +    +      E V +  ++      + +I+G ID++      I + +YKT     
Sbjct: 1123 TN-LFEHYIPNSLKGEHVFLEKELRVKLGDNYLINGIIDKLEFDNDLIRVVDYKTGSAQR 1181

Query: 891  QEIE-HIPYTHIAQLSIYEKILK---DSY-PNKSLVCLLIYVSEPKV 932
               E  + + +  Q   Y  +L+   +    +K +    I++ +   
Sbjct: 1182 GVEELEVGHDYWRQAVFYNLLLENSSEIDTTDKRIETQYIFLDDNST 1228


>gi|255534428|ref|YP_003094799.1| ATP-dependent helicase [Flavobacteriaceae bacterium 3519-10]
 gi|255340624|gb|ACU06737.1| ATP-dependent helicase [Flavobacteriaceae bacterium 3519-10]
          Length = 1064

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/788 (15%), Positives = 252/788 (31%), Gaps = 112/788 (14%)

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F  LI          + S++I  K+  + +H   DE QDTS +QW+    L +       
Sbjct: 380  FNILIHENLR----EEPSSFIYEKVGTQFSHYFFDEFQDTSFLQWQNFIPLRDHAVS--- 432

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
              S   +   VGD KQSIY F G + + +L        +   +     +  L  ++RS  
Sbjct: 433  --SDEMSFTLVGDPKQSIYRFRGGDSQLML----DIINKQEKSLVLADLENLGDNWRSAK 486

Query: 269  DILTVVDKVFSIPENA-QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +I+   ++++       Q    D       ++ +    G V++                 
Sbjct: 487  NIVDFNNQLYQFLSAHTQEAHCDIFGKGSQQTPKSESSGRVRI----------------- 529

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
               +  ++  +      +A ++   +   +              +  DI +L R   D  
Sbjct: 530  ---NLIENSTKAIYYEDVAEKMCEDLQACVDNG----------FRFADITILCRGNFDIF 576

Query: 388  LITFLTRFLKNDYK-----ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + L   LK +Y      I  +      L     +  L    R+  + ++    V ML 
Sbjct: 577  SFSNLLGNLKINYNGKEEFIKTISESGLTLNLSSTLLALTEFLRWEQNPKNFQFPVKMLY 636

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY---IHELIHIAQFCS 499
              L       I              + ++  A     + Q  I+    I          +
Sbjct: 637  -YLNILGRITIEDFSA---------DMMEMLAFKTKPEIQDFIENRYGIRLRNETLLQLN 686

Query: 500  PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             ++F    L       +          D L  +L       QN+ ++L++ +   ++   
Sbjct: 687  LYNFVEHFLQEFSVAGKET--------DFLFNYLEMLYAFSQNAGANLKDFLRFWDEEAQ 738

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                  S N + V++MT+H AKGLE PVVFL    S               +      +P
Sbjct: 739  EATIQASDNLDAVKLMTIHKAKGLEFPVVFLPMANSHKDGKFSNWLDIKDHAGLAAVNVP 798

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
             +  + +  +  ++   +      + +   L YV  TRA++Q+ +         K +N  
Sbjct: 799  SFGKELEVYDEDMAKFNQENNYQNKIDRFCLQYVATTRAAEQIFLYI---EKPNKTTNNL 855

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
              Y+ +  +   +E ++ +   + + +      +        T + +    K        
Sbjct: 856  EIYEFLEPNIPLNEHLEPLSSFD-LYEVSPEILKKKESDKAETAVTQAVRFKNEKVPNPA 914

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
              ++ +P K+  N    +                         G+  H++L  I    + 
Sbjct: 915  AIQIATPSKSYQNRVEKV-----------------------RTGIFTHEILAKI--NSKD 949

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
              +  + +Y      +    E + +   +  ++ +       + +    V     I    
Sbjct: 950  DVEKTLENYLL--DGIITQTEKQYISERLLTIINDGRYAQYFAPNQR--VINEKDIMISA 1005

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
                   R D++  +     I ++KT              H  Q+  Y+ +L+     K 
Sbjct: 1006 GGESKIYRPDRLIDTGDGYIIIDFKTGGV--------KEKHQQQVDEYQSVLEKL-GMKV 1056

Query: 920  LVCLLIYV 927
                ++YV
Sbjct: 1057 RETAIVYV 1064


>gi|223039071|ref|ZP_03609362.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter rectus
           RM3267]
 gi|222879710|gb|EEF14800.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter rectus
           RM3267]
          Length = 931

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 145/920 (15%), Positives = 278/920 (30%), Gaps = 192/920 (20%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +P        +       +  G           Q A +     E  +        +
Sbjct: 183 ENAAFPNESGVAEALKNMREYVLARGGGKDA------QSAVKQGSPSEILA--------R 228

Query: 77  KFTPQKNIITQEINKKS-PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            F  + ++  +  +K   P+L E   + +    +  D    YK+ +              
Sbjct: 229 SFMSRASLDYRTFSKIYTPELDEMFFELKAWLKRYFDALEEYKIAE--------LARFLK 280

Query: 136 HYEEAK----KKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEINHILIDEVQDTSL 190
            Y+E K    K+   L F D+     +LL   +  +  + +++D  INH+LIDE QDT++
Sbjct: 281 IYKECKISLNKRLNSLAFSDVTRLVYELLGGGETDAQMLYFRLDGRINHLLIDEFQDTNV 340

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E++R L E+   G   +    + F VGD KQSIY F G + +   +  R   +    
Sbjct: 341 AQYEIMRPLIEEIVAGYGQNGLG-SFFYVGDVKQSIYRFRGGKKELFGKLMRDFPQ---- 395

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                    L +++RS   ++   + VF+                + + +   +   V L
Sbjct: 396 ----IKAQNLEVNYRSKKALVRFTNAVFA----------GKIENFKPQRTPQKEGERVNL 441

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
             ++      + +      +S  D          +A   A  +  ++             
Sbjct: 442 VGEMPYFEAQEDDLGFVRVSSGDD----------VAMEAAQQVKFLLEKGVCED------ 485

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               DI VL  K  D   I+     L ++  +  V      L      + ++   +F   
Sbjct: 486 ----DITVLCWKNDDINKISN----LLSEAGVKSVSEGVMSLLASKNARAVVEYAKFC-- 535

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                              ++ I+K+ T+        +         +    ++   +  
Sbjct: 536 -----------------LFDERIYKLNTEAILDVNAVKLSVNPQKSALESLHYLAGRLGV 578

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
            +  A      +                     +    L EF+    R E          
Sbjct: 579 DMSDADVLRLLEL-------------------AQPYSNLTEFVYNLDRFEAK-------- 611

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                        A + +   V+IMTVH +KGLE   V + D                  
Sbjct: 612 -------------ASAKSGEGVKIMTVHKSKGLEFENVIVCDKMGAG--RHDGSNFIAEY 656

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             +          + +  +   + L +   +  +EE    LYV +TRA   LII K +  
Sbjct: 657 DASAGSWQVRHNVKKQCIDEDFARLKEKAARLEREEDMNKLYVALTRAIGGLIIVKKTGA 716

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
           +    S    +                          + + + +    P           
Sbjct: 717 NGRNPSFFGAY----------------ESSGEVTEYLDLVDFSFGEPTPSKA-------- 752

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                     + L S  K +  E   ++   +D   K        + +    GL +H LL
Sbjct: 753 ----------RNLTSVGKFEPIELVQISKQIVDEMPKVEG----KNQKAIYFGLALHYLL 798

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEV 849
           +++    E   K    S      K     E   +      L+          +   + E 
Sbjct: 799 EMVEKFDERSLKTAQISMRNAFHKFLNEGELDEIYARGLNLINESKFKQMTQAKRVFKEQ 858

Query: 850 S--VSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT-HHHVPQEIEHIPYTHIAQLSI 906
                G +           ++D + + +  I + +YKT   ++ + I         Q+  
Sbjct: 859 PLRFEGALK----------QLDLLCLDETEICVIDYKTSDKNIDENIA--------QVEE 900

Query: 907 YEKILKDSYPNKSLVCLLIY 926
           Y+KIL   YPN S+   + Y
Sbjct: 901 YKKILAQIYPNLSVRAAIFY 920


>gi|254245830|ref|ZP_04939151.1| ATP-dependent exoDNAse [Burkholderia cenocepacia PC184]
 gi|124870606|gb|EAY62322.1| ATP-dependent exoDNAse [Burkholderia cenocepacia PC184]
          Length = 1235

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 125/985 (12%), Positives = 262/985 (26%), Gaps = 129/985 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             +W      +  + +     +   +      A  L   +      +  + L    L    
Sbjct: 239  RMWAAERDAIDALLRAAQPVLNQRSHKPDAVADALAAWAVHFEQGDATAALPKAALKLTQ 298

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T       +     +    +     +              +             L     
Sbjct: 299  TALTKATKKGGATPAHAFFDVADALEAAVAAAEAAQRARWLALIAEWLDMAPGELAER-- 356

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 357  --KRTRRVVSFDDLLANLYHALHAHP---WLAETLRARYPAALIDEFQDTDPLQFAIFDR 411

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 412  IFA----------PGGPLFLVGDPKQAIYSFRAADLHTYLAARAR----------ASACY 451

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   ++ F     A  L       +R  +          +    V + 
Sbjct: 452  TLAVNQRSTPAIVDACNRFFLSNPRAFVLDGLDYYAVRAGTR---------VRAPFVDET 502

Query: 319  DSQCNPQQESWTSYFDS--LPQESSASILARRIAYTISNMIGTDTIFSNGKKR-VIQAKD 375
            D         W        L +  + +  A+  A  I+ ++              +   D
Sbjct: 503  DPGPAGDFRVWALPGGEGTLLKRDAQAQAAQACAAEIARLMAGAREGRVRLGESPLSPGD 562

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I VLV+  +   L+  +       + I  V   +  +      + L  +   I +  D  
Sbjct: 563  IAVLVQTHRQGSLVKRVLAT----WGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLR 618

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                 L S  F      ++++     +  +        +   +S  +   +Y        
Sbjct: 619  RLRAALASDWFGLDAGALWRMEQGDGDAPS--GASAADSADAMSWVERFSRYRLLWRERG 676

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-EL 554
                   F   +  A++             I+ L E        +     +L+ L +  L
Sbjct: 677  FAVMWRTFTRELRIAERLMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRL 736

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +      +    ++ N V+I+TVH +KGLE  VVF                +      +D
Sbjct: 737  DGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPSSALPDAREYHD 796

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSN 672
            D G  +        +   +   +   +    E  RL+YV +TRA  +  +    + ++ +
Sbjct: 797  DAGDAVLHYGC--DDEAAAHAARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRS 854

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +++ +     +V  + H  +         +  +  W A           P+        
Sbjct: 855  TREARRSVLNWLVAGAGHAFDAWLDEPPDEAALETAWRALAGGPVSVAPLPVPARRERLA 914

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------------------------- 764
               +           +   +   + + S++                              
Sbjct: 915  AGHDASQTLAARHATRVLRDAWRMASFSSLTASMAREEAGVAAVPDDELRPDHDALAAVT 974

Query: 765  -----------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                             + +L   +    G  +H+L ++                     
Sbjct: 975  PDGELIFADTVATDPPDDDILVFPRGAAAGECLHRLFELSRFTEPESWHAAALGALHDRP 1034

Query: 814  KLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSV------------- 851
                      L   + RL+++           +          E+               
Sbjct: 1035 VEAEPALAARLPAMMVRLVDDVVHTELVPGMRLVDLDPAKRLDEMGFLFPAPSLDLLALR 1094

Query: 852  ---------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH---------HVPQEI 893
                        +        I G ID I       +I ++K++H             ++
Sbjct: 1095 RLLVAHGYPDVALEAGTLAGFIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGPRALDV 1154

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNK 918
                + +  Q  +Y   L      +
Sbjct: 1155 AMADHAYHLQALLYTVALHRYLRGR 1179


>gi|303248300|ref|ZP_07334562.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302490325|gb|EFL50237.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 1078

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 134/922 (14%), Positives = 264/922 (28%), Gaps = 81/922 (8%)

Query: 25   YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
              ++  +           +   LK         +      +           K T    +
Sbjct: 209  ERRIGRLANAAGAMFAALDAAGLKANANFLAFLRKCREAAQADAPPQSAYAGKATLADCM 268

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            +    +  +P+L+    + Q             +        + LA  L   Y     + 
Sbjct: 269  LKASRDAVTPELERLYAEIQAAHAACDRELPALRAAMGLAPFVALAGALLEDYPTYLTQM 328

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
              L            L           ++   + HILIDE QDT+  QW V+R L  +  
Sbjct: 329  RKLPHSQWPRLVAGRLGGDMGVPDAWCRLGAGLAHILIDEFQDTARDQWRVLRLLALECL 388

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +L+ VGD KQ+IY + G +               +   +  +   LP+++
Sbjct: 389  A------RGGSLYLVGDVKQAIYGWRGGDAALFDEAPAD--DELSRVTEGVTRQTLPVNW 440

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS   ++   ++ F+   + +     +   +    +         L +       S  + 
Sbjct: 441  RSAPVVVGANNRFFAPLADPETADRVAAALLGPNLASAAPQLAAALGQAFTDARQSLPDD 500

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                      S    +SA          +  ++  + +  +G         + VL R   
Sbjct: 501  YHGPQGHVRISALTGTSAGEYEEAAREALVRLLADELVPRHG------PGGVAVLTRSNP 554

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM---- 440
                +            I VV  +  +L +H  I+ L AL  F+    D LSF       
Sbjct: 555  QAGRVADWL----IRAGIPVVTENSLLLAEHPLIRQLAALLAFLDFPPDSLSFFAFVSGR 610

Query: 441  -LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
             L   +     D++ +  T      ++    +        +       I          +
Sbjct: 611  ELFGDIAGIGRDELAEWVTGLPHRGSLSLAFRARWPDVWDRL------IRPYQRQTGLAA 664

Query: 500  PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
            P+D    I+    G +    R G+E    +  FL      E   Y S+   +    +   
Sbjct: 665  PYDLLREIVA---GYRLLERRPGDEAF--IRRFLEIAHLAESKGYGSIAAFLDFWRELGS 719

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              K     N + VR+MT+H AKGL+ P V +        + +      ++    ++  + 
Sbjct: 720  DEKVPQPENIDAVRVMTIHKAKGLQFPAVVVPFHHFTGKAGQAD----LVVGHVEEGEVL 775

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--IICKHSNTSNEKKSN 677
                     ++ +    +        E   LLYV  TR   +L   +  +     + +  
Sbjct: 776  APDMPGLGPDHALRRARE------LAEQLHLLYVAWTRPEVELHAFVPGYGKLREDSRYP 829

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  +++++F +D          S+      A           P + E          
Sbjct: 830  LPKALAILFEAFGHDPAGGGPIRLGSLPDAPQAAARACPVAAPEAPADGETAEGGRRAAT 889

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ---VIF 794
                         +    +      D +                RG + H   +    + 
Sbjct: 890  VPEVIAVDAPMAWLPRLKVYRNVARDIRDSLRFSE-------KRRGELAHLAAETFARLG 942

Query: 795  TLPEHKRKNFITSYCTKNAK-LWPAKEYKNLLLSITRLL----ENPMMTTAMSCDSYSEV 849
              P         +  T        A     L    T +L      P    A++       
Sbjct: 943  HDPADPTPAARRAAATALGGERLDAGLRDRLAGEFTDMLVWLAGLPDCREALAQGLL--- 999

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                ++           R D +    ++  + ++KT H  P+        H  Q+S Y +
Sbjct: 1000 --ERELMDADGA---RHRPDLLFAGPKHTLVLDFKTGHEDPE--------HATQVSRYLR 1046

Query: 910  ILKDSYPNK---SLVCLLIYVS 928
             L  + P +       LL+Y+ 
Sbjct: 1047 -LASALPGRAGLPAKGLLVYLD 1067


>gi|126640435|ref|YP_001083419.1| exonuclease V beta chain [Acinetobacter baumannii ATCC 17978]
 gi|126386319|gb|ABO10817.1| exonuclease V beta chain [Acinetobacter baumannii ATCC 17978]
          Length = 997

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 125/951 (13%), Positives = 269/951 (28%), Gaps = 144/951 (15%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD------LKEKLKK 102
             Q L+Q+      +   ++                + ++   +  D        +++++
Sbjct: 45  LLQVLKQSDSILVFDGSLAIQRELVFKFLGQLADQKVFKKCPAEISDGFYQHPCIQQIQQ 104

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                 K  ++F+   ++        L   +     +  +      F   I   ++ LK 
Sbjct: 105 LFGVLKKYAEQFDQLHIYLKAY----LCVEVKKRLPQVLQNKGETTFSQQIRTLSEALKG 160

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +        +      IL+DE QDT+  Q +++ S+                +  VGD 
Sbjct: 161 -EQGQRFAVFVQARYPLILVDEFQDTNQDQDDMLASIWR-----HPERYQKGCMIMVGDR 214

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQ+IY F G +    L   +  Q +           +L  + RS AD++ VVD +F    
Sbjct: 215 KQAIYGFRGGDMLTFLNAYKDIQAKH------GREYKLIHNHRSVADLVEVVDALFQRQI 268

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
           +           +++   R G           V    +Q NP    W    D   +    
Sbjct: 269 DFGE-------QVQYDPIRAGT------RPHPVLIDQNQPNPHPLRWLMLKDKETE---- 311

Query: 343 SILARRIAYTISNMIGTDTI-----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
              A+++A+ I +++            + + + +   DI VL R            +F  
Sbjct: 312 ---AQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGL----DKVQFEL 364

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               I V    +  + D    +D+ AL   IL   D+      L S LF      + ++ 
Sbjct: 365 ERLGIRVNRPSKRSVFDCTIAQDVGALLTAILHPYDEAKVKRALISRLFAMDLKQLLQLE 424

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                                      +     +  +         +   L      +  
Sbjct: 425 Q------------------TAEGLSQFMTGFDTIRELWSAQGFLVAWQQCLNQFGIWKNL 466

Query: 518 ISRFGNEVID---VLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHS---ANH 569
           ++    +       L        ++ +      +L     +  Q P   +       ++ 
Sbjct: 467 VAVQSKDNERVVVNLRHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSE 526

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             V++MT+H +KGLE  +VFL+        +              +    +        +
Sbjct: 527 AGVQLMTIHQSKGLEFKIVFLLGADKPFRENNKTLNFSTQDITVPESAQTLTQRVVAIAD 586

Query: 630 NIVSDLIK--HLKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMV 685
               + I+    ++    E NRL YV +TRAS ++   +      S    +  +   +  
Sbjct: 587 KTYLNEIELKQHEERALAEQNRLWYVALTRASHRVYALLQDTDGKSVSGLAFWKNRAEPF 646

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                 DE + +               E    H  +               Q +  K+ +
Sbjct: 647 QHRCCTDEIILEQPPAARHLNQHINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGT 706

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLS-------DNQTFNRGLIIHKLLQVIFTLPE 798
            +    +   +L    +D        +            +    G  +H++ + I     
Sbjct: 707 DLLASQSHEAVLAEDELDQVISVEAPAAQPINWIKSNFPRGTLAGNFLHEIFEHIDFQCS 766

Query: 799 HKRKNFITSYCTKNAKLWP-------------AKEYK-----NLLLSITRLLENP----- 835
            +  + I      +                   +E +      +   +  +L  P     
Sbjct: 767 DEWVSEIRRRFKNDYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQGF 826

Query: 836 MMTTAMSCDSYSEVSVSGKINCPK------------------------KDIIISGRIDQI 871
            +         SE      ++                               ++G ID +
Sbjct: 827 RLNRLQPEHYLSECPFYLALSDRVLAMKRIQQLFAEYGMEMPELLEARSARYLNGSIDLV 886

Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
               Q   I +YK+++      ++            ++  Q  +Y   L  
Sbjct: 887 YFDGQRYHIADYKSNYLGENLADYSVESIAQSMSLASYWLQAGLYLVALHR 937


>gi|326384946|ref|ZP_08206620.1| exodeoxyribonuclease V [Gordonia neofelifaecis NRRL B-59395]
 gi|326196336|gb|EGD53536.1| exodeoxyribonuclease V [Gordonia neofelifaecis NRRL B-59395]
          Length = 1123

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 127/1021 (12%), Positives = 275/1021 (26%), Gaps = 165/1021 (16%)

Query: 9    LNESYELIYKDLW-PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-TQCIEERF 66
             ++       D        +   +   +S        T       +          +++F
Sbjct: 89   SDDDLVAFLADADVAEVVRRREYLTDALSDFDAATMATTHTFCNRMLAVLGFLGGRQQQF 148

Query: 67   SLLSSFFLTQKFTPQKNIITQ--EINKKSPDLKE----KLKKSQDEFIKIRDRFNTYKMF 120
             +L +         +   +++       +P   E     +   +D    +       +  
Sbjct: 149  PILENVDEMVAEIARDAYLSRFSGDPDNAPSYAEVEQIAVAAVRDPAAVLAPDREDERTD 208

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +S +    +A+    H    K+   +  ++DL     +++   D+      +I ++ + +
Sbjct: 209  ESDIRVW-MAEQARKHTAMRKRLARIRTYDDLQQALYEIVTDPDIGDEACRRIREQFSAV 267

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            LIDE QDT   QWE+++                  L  VGD KQSIY+F GAE       
Sbjct: 268  LIDEFQDTDPQQWEIVKRCFH----------GHLPLILVGDPKQSIYAFRGAEV------ 311

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                               L +++RS A ++  +  +F                 R   S
Sbjct: 312  ----LSYLNAVEAAGEQRRLTVNWRSDAAVVDGLAAIFEGSTLGHRQIAYQPVQARRAGS 367

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            R+     V++   +     +          +   S   E  A  LAR        +    
Sbjct: 368  RVHGAPAVRIRGFMRGDFTTFTQDGTAPLVAEVRSRVTEDVADDLARL-------LNSDV 420

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            TI   G+ R ++  D+ VL+R  +         +    D  I+ V      +    A + 
Sbjct: 421  TIDDGGRTRPVRPGDVAVLLRANRTIAP----LQQALGDRGIASVVTSGTSIFATPAARY 476

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
               +   I +            +P+   S   + +            +  +         
Sbjct: 477  WWYVLSAIDTPSRQPRVRLAAFTPIIGLSATTLER-QGDTGVGTLSGQLAELGRVFVDGG 535

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            F  +   +      A+     D    +L       +  +R  ++    +   +++     
Sbjct: 536  FAAMAARLFGQFGTAERLLGMDGGERLLTDVLQISELCNRQASDTSAGIASLVDWL---- 591

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                  + +     +Q   T  R    +   V+IMTVH +KGLE P+V++          
Sbjct: 592  ---GGQIDDGAQWGQQRDAT--RRLDRDTEAVQIMTVHASKGLEFPIVYVPFGWDGASHP 646

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                 +                     +    +   +  +     E  RLLYV  TRA  
Sbjct: 647  NPATFLFHEDDRRHLD-------VGGKQARGYARRDRQSRIEGAGEDLRLLYVAATRARS 699

Query: 661  QLIICKHSNTSNEKK------------------------------SNQRTWYDMVYDSFH 690
            Q+++    +T+  +                                   +    +     
Sbjct: 700  QVVLWWAPSTTTARGALHRLLFTAEDRRIAARSGEISPIPETVPIPPIDSDCVAILRGVA 759

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE------------------------- 725
                   ++      + EW     S   P                               
Sbjct: 760  AASPSVVVEPAARTGRVEWRPPAPSATSPILDVARFGRRIDQQWRRTSYSAIVAAAHAAV 819

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
              ET       Q   +       ++ ++  +  P     +       +         G +
Sbjct: 820  HAETPPAAATVQAGSEPEDVHRPDEPDDAGLAAPGAASAEMTGPPSLMNGLPFGAAFGTL 879

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP----MMTTAM 841
            +H++L+ + T    + ++ +       A      +   L  ++  +L  P     + +  
Sbjct: 880  VHEVLEHVDTSSADRDEHVLAMCRQGAAARAVDIDVDVLARALVGVLTTPLGFGDLWSVQ 939

Query: 842  SCDSYSEVSVSGKINCPKK------------------------------------DIIIS 865
                 +E+     ++                                           ++
Sbjct: 940  PSRRLAELDFELPLSAEGGGFGLGAVGDLLARHLPADDPLVAYSDSVRTVSSETFSGYLT 999

Query: 866  GRIDQISI-SQQNIFIFEYKTHHHVPQE------------IEHIPYTHIAQLSIYEKILK 912
            G ID +         + +YKT+     +             E +   +  Q  +Y   L 
Sbjct: 1000 GSIDSVLRTDDDRFVVVDYKTNRLRAGDLSVEDFDRESMAAEMMSAHYPLQALLYSVALH 1059

Query: 913  D 913
             
Sbjct: 1060 R 1060


>gi|255305752|ref|ZP_05349924.1| putative ATP-dependent DNA helicase [Clostridium difficile ATCC
           43255]
          Length = 688

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 102/550 (18%), Positives = 192/550 (34%), Gaps = 115/550 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE K K   +DF+D++I T  LL     +      +     +ILIDE QD + +Q
Sbjct: 176 VYNLYEEQKSKVNKIDFDDMLIRTYYLLLNNKSA---LEMVRNVYKYILIDEFQDINKVQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +EV++ +                +FAVGDE QSIY F GA P  +L  ++          
Sbjct: 233 FEVLKLICSPL----------NNIFAVGDEDQSIYGFRGARPDFLLEFEQYFNN------ 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L +++RS ++I+   +++    +N                   G  G+V    
Sbjct: 277 --TKKIILDINYRSKSEIVHTANRLIDKNKNRYEKI---------IKCSQGDGGSVT--- 322

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           + S  DS  +       A  IA  I + I  D          ++
Sbjct: 323 ----------------YISPHDSEEE-------ALYIAREIIDEIQKDY---------VE 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQ 431
             D  V+ R    +  +  +      D +I  V  D    + DH A +D++A  R  ++ 
Sbjct: 351 YSDFAVIYRTNIQSRALVDVF----MDMRIPFVVKDSVITIYDHWASQDILAYLRIGINP 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           + +  ++ ++  P    S+D I  +  ++     +             K    I  +   
Sbjct: 407 KSNKDWLRIINKPFRYISKDSINMVKDEKDFITALINKCNLH-----PKQVKTINDLEID 461

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI------DVLDEFLNFTLRNEQNSYS 545
           +      +P +  + I  +    +  +    N  I      ++L+E  +          +
Sbjct: 462 LSYLNTLNPKNAISYIRTSLDYDRYVLDYCSNRKIKTNGLVEILNELESSATNF-----N 516

Query: 546 SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           ++ E +  +++    +   +       V   T+H+AKGLE   V+++        H+   
Sbjct: 517 TVTEFLEHIDRVKTELTENNKNKQTEGVIFTTMHSAKGLEFRNVYIIGVNEGTIPHEKSY 576

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            +       +                                  RL+YV +TRA ++L I
Sbjct: 577 DICKEEKKEEQLEEE----------------------------RRLMYVAITRAEEKLCI 608

Query: 665 CKHSNTSNEK 674
               N   +K
Sbjct: 609 SSTLNKYGKK 618


>gi|126698329|ref|YP_001087226.1| putative ATP-dependent DNA helicase [Clostridium difficile 630]
 gi|115249766|emb|CAJ67583.1| putative DNA helicase, UvrD/REP type [Clostridium difficile]
          Length = 688

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 102/550 (18%), Positives = 192/550 (34%), Gaps = 115/550 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE K K   +DF+D++I T  LL     +      +     +ILIDE QD + +Q
Sbjct: 176 VYNLYEEQKSKVNKIDFDDMLIRTYYLLLNNKSA---LEMVRNVYKYILIDEFQDINKVQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +EV++ +                +FAVGDE QSIY F GA P  +L  ++          
Sbjct: 233 FEVLKLICSPL----------NNIFAVGDEDQSIYGFRGARPDFLLEFEQYFNN------ 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L +++RS ++I+   +++    +N                   G  G+V    
Sbjct: 277 --TKKIILDINYRSKSEIVHTANRLIDKNKNRYEKI---------IKCSQGDGGSVT--- 322

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           + S  DS  +       A  IA  I + I  D          ++
Sbjct: 323 ----------------YISPHDSEEE-------ALYIAREIIDEIQKDY---------VE 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQ 431
             D  V+ R    +  +  +      D +I  V  D    + DH A +D++A  R  ++ 
Sbjct: 351 YSDFAVIYRTNIQSRALVDVF----MDMRIPFVVKDSVITIYDHWASQDILAYLRIGINP 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           + +  ++ ++  P    S+D I  +  ++     +             K    I  +   
Sbjct: 407 KSNKDWLRIINKPFRYISKDSINMVKDEKDFITALINKCNLH-----PKQVKTINDLEID 461

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI------DVLDEFLNFTLRNEQNSYS 545
           +      +P +  + I  +    +  +    N  I      ++L+E  +          +
Sbjct: 462 LSYLNTLNPKNAISYIRTSLDYDRYVLDYCSNRKIKTNGLVEILNELESSATNF-----N 516

Query: 546 SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           ++ E +  +++    +   +       V   T+H+AKGLE   V+++        H+   
Sbjct: 517 TVTEFLEHIDRVKTELTENNKNKQTEGVIFTTMHSAKGLEFRNVYIIGVNEGTIPHEKSY 576

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            +       +                                  RL+YV +TRA ++L I
Sbjct: 577 DICKEEKKEEQLEEE----------------------------RRLMYVAITRAEEKLCI 608

Query: 665 CKHSNTSNEK 674
               N   +K
Sbjct: 609 SSTLNKYGKK 618


>gi|289829109|ref|ZP_06546783.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 539

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 144/439 (32%), Gaps = 81/439 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+V + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSVANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE 540
            ++ I  L         H     ++     R  +    G      I+ L+E +  T +  
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFS 520

Query: 541 -QNSYSSLQELISELEQYP 558
             +    L  L + L    
Sbjct: 521 YNDEDEDLMPLQAFLSHAA 539


>gi|71902080|ref|ZP_00684118.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
 gi|71728157|gb|EAO30350.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
          Length = 658

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 104/726 (14%), Positives = 224/726 (30%), Gaps = 139/726 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKK-AQTLQQASQTQCIEE 64
           G    ++  ++ K  + +                      + ++ A+ ++ +        
Sbjct: 24  GAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKSAKEMRERVAKQIKSSRADGLTIC 83

Query: 65  RFSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            F  L   FL  +      +      + +     + + L  ++ + I    R  +     
Sbjct: 84  TFHALGLKFLQIEHEAVGLKPGFSVFDADDADAQINDLLHGAKQDVIDDTKRRISRAKNA 143

Query: 122 STLASLTLAKY----------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                  L             L A Y+        +DF+DLI     +L+  D    +  
Sbjct: 144 GLSPEQALVAARTTRDMEVATLYARYQARLIAFNAVDFDDLIRLPVQILETSD---QVAM 200

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              + I ++L+DE QDT+  Q+ +++ L           S       VGD+ QSIY++ G
Sbjct: 201 AWRERIGYLLVDECQDTNDAQYRLLKVLA----------SPRGNFTCVGDDDQSIYAWRG 250

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +++ +R   +          +I+L  ++R    +L   + + +   +A   +  S
Sbjct: 251 ANAENLMQLERDYPQ--------LKVIKLEQNYRCPNRVLRAANALIAHNPHAHLKTLWS 302

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                           +++W                          +   +   A +IA 
Sbjct: 303 DQ---------KDGERIRIW--------------------------ECRDSEHEAEKIAA 327

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            IS +         G  + +   D  +L R    +  +    + L+    I         
Sbjct: 328 EISYL---------GDAKQVPWSDFCILFRGNFQSRPLEKALQLLR----IPYHLTGGTA 374

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--- 468
             +   +K+L++  R +++ +DD +F+  ++SP        + K+       +       
Sbjct: 375 FLERQEVKNLLSWLRLLVNPDDDAAFLRAVQSPKREVGSTSLAKLAELAATKQMPMSRAA 434

Query: 469 ----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
                +Q+      +        + EL       S  +    +        +   +  +E
Sbjct: 435 ESLGALQQLPARAANGLNKFTDILRELRQQVSRVSSAELVRRLAEVSGLLTELREQSNDE 494

Query: 525 -----VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                    ++E        E   +     +   + Q     +       N+VR+MT+H 
Sbjct: 495 ASYQRRKRNVEEL---AEWFEGGPFG--ASVGDLVSQLALLSRNDKDDGGNQVRMMTLHA 549

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KG E   VF+      V  H+                                      
Sbjct: 550 SKGSEFRYVFIAGCEDGVLPHEVSL----------------------------------- 574

Query: 640 KKSTQEEYNRLLYVGMTRASDQLII----CKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++   +E  RLLYVG+TRA +QL +    C        +    R + ++  +    D   
Sbjct: 575 EEGNVQEERRLLYVGITRAKEQLWMSYSKCARRFGERVRFKPSRFFDELPAEELQRDGAD 634

Query: 696 KKIKLT 701
             +   
Sbjct: 635 PAVDAE 640


>gi|325959374|ref|YP_004290840.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
 gi|325330806|gb|ADZ09868.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
          Length = 933

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 144/820 (17%), Positives = 257/820 (31%), Gaps = 168/820 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y EA  +   +DF  L IN   LLK       +   I  +   IL+DE QDT+ IQ 
Sbjct: 183 YEKYLEALGEQKKIDFAGLQINVLKLLKNNPD---VLKAIRDKYRFILVDEYQDTNPIQD 239

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E    ++          ++ + +  VGDE QSIY+F GA+P   +R K     +      
Sbjct: 240 EFFDLIS----------NTHKNICVVGDEDQSIYAFRGADPWNFIRFKEKYDSKY----- 284

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + L  +FRST++I+ + D       +                              
Sbjct: 285 ----VSLDKNFRSTSNIVKLFDGFMENYRSYPKKI------------------------- 315

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                      +          + +    +  A+ +  TI  +     I   G       
Sbjct: 316 -----------EPSRECGNNIIILKSDDVTDEAKNVVRTIKQLKEDGIIPHYGY------ 358

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             + +L R                    I           D   I+ ++ +  ++     
Sbjct: 359 --VALLFRS---VRYHANKIIAELKKNDIPYTVKGHGSFLDRKEIQTMLYMLSYVDPPSY 413

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK------- 486
           D  F        +N S  +   +       E +Y   + F    +   Q  +        
Sbjct: 414 DDRFTSWNN--WWNISMFETEFLNLNPKTVEALYNLEKDFDISSLLTKQEFVDIGMEDDQ 471

Query: 487 ---YIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNF 535
               + +L  + Q  S         +  IL      +  ++    +  +    L +  + 
Sbjct: 472 DINKLQQLNQLKQELSEKPRTILQTYYDILEISGYLKWLVTDETPKNQEKIYNLAQLSSI 531

Query: 536 TLRNEQNS-YSSLQELISELEQYPPTIKRAHSANHN--EVRIMTVHTAKGLESPVVFLVD 592
             + E  +    +++ +  L   P  ++       N   V I TVH +KGLE PVVF+  
Sbjct: 532 LNKYEYMNKNPKIKDFMFYLYLLPSGMQYDEHVVDNPFSVNISTVHQSKGLEFPVVFICS 591

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                F  +  K+ +++P   +          +    + +      L      E  RL Y
Sbjct: 592 VIKNRFPGRKKKEKNLVPIPQELLLKFKKKDLTLLTEDTI------LPDEFDMEERRLFY 645

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V MTRA D L++         K          V  S +  E  K  ++TNS    E    
Sbjct: 646 VAMTRAQDVLVVSTADKIKVNK----------VGYSPYVKEIEKIEEVTNSCKFMEMCKD 695

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                                                   +P  L+ S+IDT  +     
Sbjct: 696 RD----------------------------------LSKEKPISLSYSSIDTYNRCPFMY 721

Query: 773 LLSDNQTFN--------RGLIIHKLLQVI-------FTLPEHKRKNFITS-YCTKNAKLW 816
            +     F          G+IIH  L+ I         +   + K  + + + T +    
Sbjct: 722 KMLYEYGFQTPPSYMQNYGIIIHNCLEKIHIGLKNDENIDGSRIKEIVQTCWITLHTNKK 781

Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ- 875
             +  + ++     LL+       +   S   +S     +  KK++ I+GR D I  +  
Sbjct: 782 KDENQRMMVER--NLLD---YVHEVKDHSRKIISAEEPFSIVKKNMEINGRTDLILENNQ 836

Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
             I + ++K      +++     +   QL +YE  LKD Y
Sbjct: 837 GEIELLDFK----AREQMGIEKTSVEFQLKMYEYALKDKY 872


>gi|28199902|ref|NP_780216.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa
           Temecula1]
 gi|182682653|ref|YP_001830813.1| ATP-dependent DNA helicase Rep [Xylella fastidiosa M23]
 gi|28058023|gb|AAO29865.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa
           Temecula1]
 gi|182632763|gb|ACB93539.1| ATP-dependent DNA helicase Rep [Xylella fastidiosa M23]
 gi|307578933|gb|ADN62902.1| ATP-dependent DNA helicase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 658

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 104/693 (15%), Positives = 218/693 (31%), Gaps = 135/693 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKK-AQTLQQASQTQCIEE 64
           G    ++  ++ K  + +                      + ++ A+ ++ +        
Sbjct: 24  GAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKSAKEMRERVAKQIKSSRADGLTIC 83

Query: 65  RFSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            F  L   FL  +      +      + +     + + L  ++ + I    R  +     
Sbjct: 84  TFHALGLKFLQIEHEAVGLKPGFSVFDADDADAQINDLLHGAKQDVIDDTKRRISRAKNA 143

Query: 122 STLASLTLAKY----------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                  LA            L A Y+        +DF+DLI     +L+  D    +  
Sbjct: 144 GLSPEQALAAARTTRDMEVATLYARYQARLIAFNAVDFDDLIRLPVQILETSD---QVAI 200

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              + I ++L+DE QDT+  Q+ +++ L           S       VGD+ QSIY++ G
Sbjct: 201 AWRERIGYLLVDECQDTNDAQYRLLKVLA----------SPRGNFTCVGDDDQSIYAWRG 250

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +++ +R   +          +I+L  ++R    +L   + + +   +A   +  S
Sbjct: 251 ANAENLMQLERDYPQ--------LKVIKLEQNYRCPNRVLRAANALIAHNPHAHLKTLWS 302

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                           +++W                          +   +   A +IA 
Sbjct: 303 DQ---------KDGERIRIW--------------------------ECRDSEHEAEKIAA 327

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            IS +         G  + +   D  +L R    +  +    + L+    I         
Sbjct: 328 EISYL---------GDAKQVPWSDFCILFRGNFQSRPLEKALQLLR----IPYHLTGGTA 374

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--- 468
             +   +K+L++  R +++ +DD +F+  ++SP        + K+       +       
Sbjct: 375 FLERQEVKNLLSWLRLLVNPDDDAAFLRAVQSPKREVGSTSLAKLAELAATKQMPMSRAA 434

Query: 469 ----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
                +Q+      S        + EL       S  +    +        +   +  +E
Sbjct: 435 ESLGALQQLPARAASGLNKFTDILRELRQQVSRVSAAELVRRLAEVSGLLTELREQSNDE 494

Query: 525 -----VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                    ++E        E + +     +   + Q     +       N+VR+MT+H 
Sbjct: 495 ASYQRRKRNVEEL---AEWFEGDPFG--ASVGDLVSQLALLSRNDKDDGGNQVRMMTLHA 549

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE   VF+      V  H+                                      
Sbjct: 550 SKGLEFRYVFIAGCEDGVLPHEVSL----------------------------------- 574

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
           ++   +E  RLLYVG+TRA +QL +        
Sbjct: 575 EEGNVQEERRLLYVGITRAKEQLWMSYSKCARR 607


>gi|114776450|ref|ZP_01451495.1| ATP-dependent DNA helicase Rep [Mariprofundus ferrooxydans PV-1]
 gi|114553280|gb|EAU55678.1| ATP-dependent DNA helicase Rep [Mariprofundus ferrooxydans PV-1]
          Length = 652

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 119/715 (16%), Positives = 227/715 (31%), Gaps = 125/715 (17%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             L+ +D+       V+  NK      E     +  KA  L+  +            +  
Sbjct: 43  AALVERDVPDHAITAVTFTNKAAKEMRERLQQRLGDKANGLRICTFHALGLAMVREHADL 102

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL--- 129
                   + N+      ++   ++  L + +      +      ++       L +   
Sbjct: 103 V-----GRKANVSVFAGAEQKTVMRSVLSEMKLAADADQVDRMLSRVSSLKSGLLEVHEN 157

Query: 130 -AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               +   Y+   +K   +DF+DL++    LL + D    +R    +   + L+DE QD+
Sbjct: 158 QLAAIRETYDALLEKMNAVDFDDLLVLPLRLLSEHD---NVRAIWRERARYFLVDEYQDS 214

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           S IQ++++R L                L  VGD+ QSIY + GAE K + + +R      
Sbjct: 215 SRIQYQLVRLLV----------PDDGNLTVVGDDDQSIYGWRGAEVKNLFQLERDY---- 260

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   ++ L  ++RST  IL   + + +      G +  ST          GQ   +
Sbjct: 261 ----TNLHVVRLEENYRSTGSILQASNSLIANNSERLGKTLRSTL---------GQGKPI 307

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           ++W     + +                          ARR+A  I +         +   
Sbjct: 308 RVWGSPNPEEE--------------------------ARRLAGDIKSHHARSGGQWDAYC 341

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                    VL R    +  I    R       I    +      D   I+D++A  R I
Sbjct: 342 ---------VLYRASFQSRSIELALRE----AGIPYHVSGGMSFFDRAEIQDILAYLRLI 388

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYI--QKFANCGISKFQHVI 485
            +  DDL+F+  +  P        +  +      E  ++ E    ++  +      +   
Sbjct: 389 ANFSDDLAFMRAIARPRRGIGSKALGDLGFFAMAEDCSLLEACLKEELDHKRAEALREFG 448

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRNE 540
             I  L H  +   P D F  +L   +      +   ++      +  + E   + + + 
Sbjct: 449 DMIVGLEHQFRHGEPDDAFDAVLDLTRLEAAIRAEADDQEVAERRMSNVLELRRWWVIHT 508

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +        L   L+      ++       +VR+MTVH AKGLE   V+++     +F H
Sbjct: 509 ERGGD----LTEFLQHIFLLAEKQDDDPSGQVRLMTVHAAKGLEFDQVYVIGMEEGIFPH 564

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                 L ++  EE  RL+YV MTRA  
Sbjct: 565 -----------------------------------RNALDENRMEEERRLMYVAMTRARF 589

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            L +             +      + +   +  R       +    +E   +  +
Sbjct: 590 LLTLSYSLTRRRFGTIEKCAPSPFLKEPDQSVLRWVDKDADSEEAHEEAQDHMAA 644


>gi|322698728|gb|EFY90496.1| putative ATP-dependent DNA helicase [Metarhizium acridum CQMa 102]
          Length = 989

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/577 (15%), Positives = 171/577 (29%), Gaps = 152/577 (26%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y++   ++ +LD++DL++   +LL++              +  +LIDE QDT+ IQ+
Sbjct: 176 YTAYQDHLARSNLLDYDDLLVRCVELLQEHPSCV-------SNVQAVLIDEYQDTNGIQY 228

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           ++++   +          + + +  VGD  QSIY +  AE K + R  R   +       
Sbjct: 229 DLMKLFAQ----------ARQRITIVGDPDQSIYGWRSAEIKNLYRLLRDYPETDE---- 274

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I L  ++RS+  IL +  +V                T   +               
Sbjct: 275 ----ISLEENYRSSQLILDMSLQVIQQDSKRYQKVLLPVHTKGTKPV------------- 317

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 L +  S+S     I   +  +I             I+ 
Sbjct: 318 ----------------------LRRLKSSSREGEWIVSELKRVI-------TMFGGAIKN 348

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           +D+ +L+R    +  I            IS          +   IK L+   R +     
Sbjct: 349 EDVAILLRSAYLSRHIESAL----GKAGISYRMIGGHKFYERKEIKILLDYLRVVYQPNM 404

Query: 434 DLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE---YIQKFANCGISKFQ------- 482
           + +   ++  P     E  I   +        +++       +      +K +       
Sbjct: 405 NDAVARIINVPRRGIGETTIKSLLEKAEMSKLSLWALLCRHCRGGRRATTKLRPNMEQKL 464

Query: 483 --HVIKYIHELIHIAQFC------SPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDE 531
              ++  I  L    +        S  D    ++     ++   + +     +    + E
Sbjct: 465 NTELLNVISSLRQRMENISATNPVSLVDLIEQLVNQLSFKKYLEAEYQEDHEQRWANVQE 524

Query: 532 FLNFTLRNEQN--------------------SYSSLQELISELEQYPPTIKRAHSANH-N 570
            L+      ++                        L + ++ +             +  +
Sbjct: 525 LLSLANDFVRDYGNEEEEHALPEIENVDQVKDNDILGKFLANVALASDAQSGDKEQDKAS 584

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V I T+H AKGLE PVVF+         H                              
Sbjct: 585 QVTISTIHAAKGLEWPVVFIPSVYEGSIPHS----------------------------- 615

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                    +    +E  RLLYV MTRA   L +   
Sbjct: 616 ---------RAEDMDEERRLLYVAMTRAKALLYLSCP 643


>gi|330837148|ref|YP_004411789.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
 gi|329749051|gb|AEC02407.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374]
          Length = 808

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 108/688 (15%), Positives = 193/688 (28%), Gaps = 135/688 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI-EE 64
           G    ++  +  K  W +    ++                +  +   +   +  Q     
Sbjct: 40  GAGSGKTRVITTKIAWCIRALGIAPWKILAVTFTNKAAGEMRDRVLAMVPDANPQDFMIR 99

Query: 65  RFSLLSSFFLTQKFTP----------QKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDR 113
            F    ++FL +                      +    P+ K+ +L     +    +DR
Sbjct: 100 TFHSFGAWFLRRHGELLGLNSGFTIYDDEDSLSLLASAYPEFKKKELSPYMKKIAAAKDR 159

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
             T       +    L   +   Y+        +DF DLI  + +LL        I  K+
Sbjct: 160 GITAGASLGFVKDKRL-PEMFDAYQRRLHAIGNVDFADLIGRSIELLDAHPD---IADKM 215

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
                 IL+DE QD++  Q+E++  L                L  VGD+ QSIY F GAE
Sbjct: 216 RNRFRVILVDEYQDSNPAQFELLARLVGSDT----------ILCVVGDDDQSIYRFRGAE 265

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            K +L                  II+L  ++RST +IL V   V S   +    +  +  
Sbjct: 266 IKNILSFPEKYP--------GTRIIKLEQNYRSTGNILAVAGAVISHNTSRHEKTLWTDN 317

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               +                                     L         AR I   I
Sbjct: 318 PNGQKPL-----------------------------------LTYVDDDKAEARLIGQMI 342

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
           S                   ++  +L R    +     +         I V         
Sbjct: 343 SQ--------------DKNYRETAILYRTNAQSMNFELVL----PRMGIPVKVIGSLRFY 384

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK 472
           +   +KD +AL    L+  D++SF  M   P        + K+          +++ +  
Sbjct: 385 EREEVKDGLALVSLALNHRDEVSFRRMANKPTRGLGASGMDKLLELATKHDGDLFQTMDD 444

Query: 473 ------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK----GRQQFISRFG 522
                  +               E + +        F ++++         RQ       
Sbjct: 445 ALESGLLSGKAAQGITAFRHMFDEALALLDSGDNVGFASVLVEKSGLLAYYRQMDEKNET 504

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
                 L   +N     E+     +   +  +   P T+      + N V+++T+H  KG
Sbjct: 505 ETKEGNLGALINMFAEYEK-GREGIIACLENISLDPTTLGVEGKDDGNYVKLITMHNTKG 563

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   VF+      +F  K   +  +                                  
Sbjct: 564 LEFDRVFVTGLEDGLFPGKMDDEDDMEEE------------------------------- 592

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNT 670
                 RL YV +TRA + L++      
Sbjct: 593 -----RRLFYVAVTRARETLVLTSARRR 615


>gi|171682312|ref|XP_001906099.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941115|emb|CAP66765.1| unnamed protein product [Podospora anserina S mat+]
          Length = 988

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 102/679 (15%), Positives = 192/679 (28%), Gaps = 158/679 (23%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                  Y+   KK+ +LDF+DL++   +LL++              I  +LIDE QDT+
Sbjct: 176 LDECYEEYQAHLKKSNLLDFDDLLVRCVELLREFPSCV-------SNIQTVLIDEYQDTN 228

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+E+++   +            + +  VGD  QSIY +  AE + + R  +       
Sbjct: 229 GVQYELMKLFAQ----------RHKRITIVGDPDQSIYGWRSAEIQNLWRILKDFP---- 274

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I L  ++RS   IL +   V    +     +         R           
Sbjct: 275 ----GTDEISLEQNYRSFDAILRLSLLVIQQDKKRYQKALKPVHGRGPRPV--------- 321

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                     L +  SAS  A  I   I  +I            
Sbjct: 322 --------------------------LRRLKSASAEADWIVSEIRRVI-------MMSGS 348

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
           ++   D+ +L+R    +  +            I+          + L IK ++   R I 
Sbjct: 349 MLTFNDVAILLRSASLSRHVETAL----GKSGIAYRMVGGKKFYERLEIKAILDYLRVIY 404

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-------------C 476
             E++ +   ++  P     +  I  +  +   +      +                   
Sbjct: 405 QPENNDALARIINVPKRGVGDVTIKSLLEEAESSSLSVWAVLTKHCRGDRTAKTKIPKPM 464

Query: 477 GISKFQHVIKYIHELIHIAQFCS--------PHDFFTLILGAKKGRQQFISRFGNE---V 525
                  +I+ +  +    +  +          +    +L A   ++       NE    
Sbjct: 465 EQRIAAGLIRPLDNIRRKMEEAAKPGGAVFGLVEMIEQLLAALNFQKYLKDTHPNEHEGR 524

Query: 526 IDVLDEFLNFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAH 565
              ++EFL                          +      L   ++ +           
Sbjct: 525 WANVEEFLTLAGDFVRDLKESSDEELLPELEGLEQAKEDEVLPRFLANVSLASDVQTGDD 584

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             N   V I T+H AKGLE PVVF+    +    H                         
Sbjct: 585 GENKPLVTISTIHAAKGLEWPVVFVPAVYNGSIPH------------------------- 619

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYD 683
                        ++    +E  RLLYV MTRA   L +     S   N +++   ++ +
Sbjct: 620 -------------MRSDDNDEERRLLYVAMTRAQSLLYLSCSLFSTNGNGERNQLSSFVE 666

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP---LEREETIKQLMDEQKIP 740
            ++  F          +   I K             +  P      +       +E +  
Sbjct: 667 PLHRVFAPKGPCFDRPVMLEIAKVLGRTLPPEDAVFKALPSMFNPEDNIFPVDPEESQEV 726

Query: 741 KKLFSPIKNDINEPYILNP 759
               +  +   + P    P
Sbjct: 727 PAAGTEARTSDDAPRAKRP 745


>gi|116689237|ref|YP_834860.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia
            HI2424]
 gi|116647326|gb|ABK07967.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia
            HI2424]
          Length = 1235

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 125/985 (12%), Positives = 262/985 (26%), Gaps = 129/985 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             +W      +  + +     +   +      A  L   +      +  + L    L    
Sbjct: 239  RMWAAERDAIDALLRAAQPVLNQRSHKPDAVADALAAWAVHFEQGDATAALPKAALKLTQ 298

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T       +     +    +     +              +             L     
Sbjct: 299  TALTKATKKGGATPAHAFFDVADALEAAVAAAEAAQRARWLALIAEWLDMAPGELAER-- 356

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 357  --KRTRRVVSFDDLLANLYHALHAHP---WLAETLRARYPAALIDEFQDTDPLQFAIFDR 411

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 412  IFA----------PRGPLFLVGDPKQAIYSFRAADLHTYLAARAR----------ASACY 451

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   ++ F     A  L       +R  +          +    V + 
Sbjct: 452  TLAVNQRSTPAIVDACNRFFLSNPRAFVLDGLDYYAVRAGTR---------VRAPFVDET 502

Query: 319  DSQCNPQQESWTSYFDS--LPQESSASILARRIAYTISNMIGTDTIFSNGKKR-VIQAKD 375
            D         W        L +  + +  A+  A  I+ ++              +   D
Sbjct: 503  DPGPAGDFRVWALPGGEGTLLKRDAQAQAAQACAAEIARLMRGAREGRVRLGESPLSPGD 562

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I VLV+  +   L+  +       + I  V   +  +      + L  +   I +  D  
Sbjct: 563  IAVLVQTHRQGSLVKRVLAT----WGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLR 618

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                 L S  F      ++++     + +         +   +S  +   +Y        
Sbjct: 619  RLRAALASDWFGLDAGALWRMEQ--GDGDAPPGASAADSADAMSWVERFSRYRLLWRERG 676

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-EL 554
                   F   +  A++             I+ L E        +     +L+ L +  L
Sbjct: 677  FAVMWRTFTRELRIAERLMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRL 736

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +      +    ++ N V+I+TVH +KGLE  VVF                +      +D
Sbjct: 737  DGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPSSALPDAREYHD 796

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSN 672
            D G  +        +   +   +   +    E  RL+YV +TRA  +  +    + ++ +
Sbjct: 797  DAGDAVLHYGC--DDEAAAHAARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRS 854

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +++ +     +V  + H  +         +  +  W A           P+        
Sbjct: 855  TREARRSVLNWLVAGAGHAFDAWLDEPPDEAALEAAWRALAGGPVSVAPLPVPARRERLA 914

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------------------------- 764
               +           +   +   + + S++                              
Sbjct: 915  AGHDASQTLAARHATRVLRDAWRLASFSSLTASMAREEAGVAAVPDDELRPDHDALAAVT 974

Query: 765  -----------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                             + +L   +    G  +H+L ++                     
Sbjct: 975  PDGELIFADTVATDPPDDDILVFPRGAAAGECLHRLFELSRFTEPESWHAAALGALHDRP 1034

Query: 814  KLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSV------------- 851
                      L   + RL+++           +          E+               
Sbjct: 1035 VEAEPALAARLPAMMVRLVDDVVHTELVPGMRLVDLDPAKRLDEMGFLFPAPSLDLLALR 1094

Query: 852  ---------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH---------HVPQEI 893
                        +        I G ID I       +I ++K++H             ++
Sbjct: 1095 RLLVAHGYPDVALEAGTLAGFIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGPRALDV 1154

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNK 918
                + +  Q  +Y   L      +
Sbjct: 1155 AMADHAYHLQALLYTVALHRYLRGR 1179


>gi|297626182|ref|YP_003687945.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921947|emb|CBL56507.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1118

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 128/954 (13%), Positives = 241/954 (25%), Gaps = 187/954 (19%)

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
            +      +   A       L   Y  AK +   ++F DL+     + ++   +  +   +
Sbjct: 208  YRAVVDAERVAAERLELLGLVESYRRAKDRLGWVEFADLMAQAATIAER---APEVSTML 264

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             ++   +L+DE QDTS  Q  ++ +L     V +        + AVGD  QSIY + GA 
Sbjct: 265  REQYRVLLLDEYQDTSSAQATLLTTLFSGPTVAEG---RGHPVTAVGDPYQSIYGWRGAA 321

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
               +        K     G   +   L ++ RS  +IL   + V    ++   +      
Sbjct: 322  ASNIAEFPTSFPK---ADGTAANAYSLRVNRRSGPEILDGANVVAQGLQSDPAMPHLPGV 378

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                 ++   +  TV       S  +        +     +                   
Sbjct: 379  DFTLHAAPGQEPATVTTRHFTSSDEELDWIADDIAARGALEG------------------ 420

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                                  I VLVR+      I  L R L     +         L 
Sbjct: 421  -------------------YAGIAVLVRRN---ATIEPLFRRLSAR-DVPTEIVGLAGLF 457

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------------RH 461
                I +++A  R +    D+ + V +L S  +     D+  +               R 
Sbjct: 458  RLAVISEIVATLRLLDDDTDNPALVQLLSSRRWQIGPPDLAALGEAVNRLNAVRSDPSRD 517

Query: 462  ETETVYEY-------------------------------IQKFANCGISKFQHVIKYIHE 490
            +                                          +  G S+    +    E
Sbjct: 518  QGGATPAADPPASLRAELARQQEQAGRPMACLMDVLDLPCPGLSQLGSSRLGRFVAEFRE 577

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEFLNFTLRN-EQNSYSS 546
            L               I+ A     + ++  G     +   +  FL       + +  + 
Sbjct: 578  LRRHVSE-PLPGLVRRIVAAMNLGVELLADPGTYSQHMGAQVARFLEVVGDFTDLDGTAR 636

Query: 547  LQELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS---- 599
            L   +S +E          +A     + V +++VH AKGLE   V+L       F     
Sbjct: 637  LSGFLSYVESVLDEEDGMEQALPTADDSVSLLSVHRAKGLEWDTVYLPTLVEGTFPATVR 696

Query: 600  -HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                     ++PS        I      ++  + +            E  RL YV +TRA
Sbjct: 697  GDNWTTLARLLPSPLRGDAGSIPQLGETTKAGLQAFGTDLRSAGQFAED-RLAYVAITRA 755

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
               L+   H      K ++  + Y  V       +  ++             A       
Sbjct: 756  RRHLVATTHVWEPQRKTASHTSEYFRVLAQISGGDLPEQPAPDADNPVAAVPATAVWPRP 815

Query: 719  PENTPLEREETIK-------------------------------------QLMDEQKIPK 741
             +    E  ET                                          + Q   +
Sbjct: 816  ADPDREELVETAAGTVQGLIRRLGPGAGGDPGIGELPAQLAGELSLDEQQAYQEWQAEAQ 875

Query: 742  KLFSPIKNDINEPYILNPST--------------IDTKGKTNLESLLSDNQTFNRGLIIH 787
             L    +    + + + P                               +     G   H
Sbjct: 876  LLVRAAREQARDAHRVVPVESLSASALILSQAEPEQFAANLVRPMPRRASGGAGVGTRFH 935

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
              L+  F                        +    +  S  R L   ++        Y+
Sbjct: 936  DWLEQRFRAGSG---------LLVGDDESSDELPARMDASSQRRL--EILQRRFEEGPYA 984

Query: 848  ---EVSVSGKINCPKKDIIISGRIDQISISQQ----NIFIFEYKTHHHVPQEIEHIPYTH 900
                  V            + GRID +            + ++KT    P +        
Sbjct: 985  DLTPYRVEAPFILVLGSRQVRGRIDAVYRLPGSGPHRFQVVDWKT-FDGPADP------- 1036

Query: 901  IAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
              QL++Y     D    +   +  +  +V   +V              +   +P
Sbjct: 1037 -LQLALYRLAWADVSGVEPDEVDAVFCHVMSGRVERPTGLPGRDELTRLVEHLP 1089


>gi|297562751|ref|YP_003681725.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296847199|gb|ADH69219.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 1060

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 136/999 (13%), Positives = 277/999 (27%), Gaps = 156/999 (15%)

Query: 8   SLNESYELIYKDLWPLPYFQVS-DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E I   L       ++   + Y    +      +      L   S  + + E  
Sbjct: 69  AAQELRERITARLRRTTREPLALTFHSYAYALIRREFQRMGDLPPRL--LSGPEQLMEVR 126

Query: 67  SLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            LL    L       + +    E    + +L++ L ++Q+    +               
Sbjct: 127 ELLRGEALDGAADWPERLRPALETRGFAEELRDFLMRAQER--GMGPDELAALGRDRDRD 184

Query: 126 SLTLAKYLNAHYEEAKKKNCV--LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               A      Y        V  L++ +L+    +LL        +R +       + +D
Sbjct: 185 DWVAAAGFLDRYTGRFDIAPVPTLNYAELVRVAANLLSDPG----VRERERAAHEAVFVD 240

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT   Q E++R+L  D           R L AVGD  QSIY+F GAE + +L   R 
Sbjct: 241 EYQDTDPAQEELLRALAGD----------GRDLVAVGDPDQSIYAFRGAEVRGILDFPRR 290

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                T    +  ++ L    RS   +L+    +                      +   
Sbjct: 291 FP---TARRTEAPVVALRTCRRSGRALLSASRGLTRRLPAVASARGHVNEHRDLTPAEGV 347

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
             G V++                                   A + A  I++ +    + 
Sbjct: 348 PDGEVRVLLADS------------------------------AAQEAAVIADTLRRAHLV 377

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                  +   D+ VLVR    T  +  L R L        VG D   +     ++ ++A
Sbjct: 378 D-----GVPWSDMAVLVRS--STRQLPVLRRALTAASVPVAVGADDLPVAAEPIVRPMLA 430

Query: 424 LGRFILSQE--DDLSFVCMLKSPLFNFSE------------------DDIFKICTQRHET 463
           L R+ L+    D+ +   +L SP                         D           
Sbjct: 431 LIRYGLAPAELDEDAARELLTSPFGEADTVRLRRLVRALRRLDLDRAHDGGAHGGAPEGD 490

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHI-------------------------AQFC 498
            +     ++ +       Q ++  + +   +                         A+  
Sbjct: 491 ASREGAREERSGAYRPSAQLLVDALRDPAELTLVDPEIAAPATRVAQALRTVRDLNARGA 550

Query: 499 SPHDFFTLILGAKKGRQQFIS------RFGNEVIDVLDE----FLNFTLRNEQNSYSSLQ 548
                   +        + +       R G      LD     F +     ++    S  
Sbjct: 551 DAEQVLWELWRDSGLADRLLRASLAGGRRGAAADRDLDAVVALFESAARYCDRLPPGSPA 610

Query: 549 ELISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
             + +L             +     VRI+T H +KGLE  +V +       +    ++  
Sbjct: 611 GFLEDLAAQEIPGDSLAERAPEGEAVRILTAHRSKGLEWGLVVVAGAQEGDWPDLRLRGS 670

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            +      D           +  +        L     +E  RL YV +TRA   L++  
Sbjct: 671 LLGVEELVD-----------TDVHSADSSGAALASKLLDEERRLFYVALTRARRTLVVTA 719

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP--- 723
                 +++ ++      V +       ++ + L + +     +  +     P       
Sbjct: 720 VGGEDTDERPSRFLNEMGVGEPEPVSTGLRWLSLPSLVADLRSVVTDPGAPEPLREAAAT 779

Query: 724 -----LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                 E         +   +          +  +   ++PS +++     L  LL    
Sbjct: 780 HLARLAEEGVRGADPAEWYALTPFTDDRPLAEEEDTIRVSPSQVESFTNCQLRWLLERAA 839

Query: 779 TFNRGLIIHKL-----------LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
             + G     L            Q         R + I +            +       
Sbjct: 840 GASSGDSASALGTVVHAVAVLVAQGSTPDEISGRMDEIWADLDFGGPWQARAQRDRADTM 899

Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTH 886
           + +L++        + +    V            I I+GR+D++         + + KT 
Sbjct: 900 VRKLVDWE------AANDRELVVTEEGFRVDVGGIEITGRVDRLERDDQGRAVVVDIKTG 953

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
            +   ++   P   + Q+++ +         +     L+
Sbjct: 954 KNKADDLARHPQLGVYQMAVLKGAFAKLGLTEPGGAALV 992


>gi|313667279|ref|YP_004049680.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
 gi|313153910|gb|ADR37760.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
          Length = 889

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 124/847 (14%), Positives = 265/847 (31%), Gaps = 110/847 (12%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKK 162
             +++  R +  + F+ T  +   L       Y     +     LD  ++      L++ 
Sbjct: 141 ALVELFKRRSISEAFEGTGDASRSLVAGFKKVYARWLTRLGGRYLDPSEIERRALALIRH 200

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +       ++   +  +L+DE QDT+ IQ  V  +L            +   +  VGD 
Sbjct: 201 PEA----LERVRSRLGVVLVDEYQDTAPIQARVFEAL----------EEAGVPIEVVGDP 246

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY+F  A+ +         ++    A +  ++  L +S+R    +   ++  F+  E
Sbjct: 247 KQSIYAFRDADVEG-------FREAHRRARENGNVETLTVSYRHPPALADFLNA-FTSAE 298

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
            A G +  +      +  R G    V+L         +  +  +           +    
Sbjct: 299 AALGKAFTAEEAPEVKPGREGDA-RVELITVTPGDGKATLDALRNGEARLLARELRRLHD 357

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                                            +LVL R+R   P +    R       +
Sbjct: 358 E-------------------------EGYDYGQMLVLFRRRHQLPPLLRALR----GAGL 388

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                    L +   +++L    R    +    S    L  P    +   + ++  Q   
Sbjct: 389 PFAVVGLRGLYEEPEVRELYHALRLATGEAPRDSLAVFLSGPFGGLTLGQVREVLAQDAP 448

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRF 521
              +  +                + +  L   A+   P +  T ++ A   +   F+   
Sbjct: 449 ESYLTLHH-----------PEAAERLLRLRADAEKMRPAEALTRLIEAPTAKGPPFLDLL 497

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
             E+ D +   L         +Y      +                  + VR+M+ H AK
Sbjct: 498 ELEMADTVLYVLGRIE--HTRTYPEAVATLESFRSGGEEEASLARLGGDAVRVMSAHAAK 555

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GL++PVV + D       +     +          G            +    + + LK 
Sbjct: 556 GLQAPVVVIFDADRTFNGNSDELVIEPRTGRVALNG-----------EDAYESIAQALKA 604

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             + E +RL+YV ++R+S++LI+        ++       + +        +   +    
Sbjct: 605 RKEGEDHRLIYVALSRSSERLIVSAAV----KEPRKGSWLHHLTEVLNLGSKFEHRNVTL 660

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
             I  +E I  E +T   +             +      K        D  E +  +P  
Sbjct: 661 AEIALEEPIEQEAATLPVDPELATPLPPAPPAVSSPTALKAERELEVPDPEEAWPADP-- 718

Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                        +       G+++H+ +Q          +  +     +  +  PA   
Sbjct: 719 ------------EARLLGRIVGILVHEGIQR--DWDPDDPEVLLALEGEQVLEEVPADRR 764

Query: 822 KNLLLSITRLLE--NPMMTTAMSCDSYSEVSV-SGKINCPKKDIIISGRIDQISISQQNI 878
             ++  +  LL     ++ +A+      EV +    +  P       G ID++       
Sbjct: 765 PAVIEEVATLLRVYRTLLGSAIPSLEEREVDLAELPLVYPLGATAWEGVIDRLYRVGDVW 824

Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
           ++ +YKT        E  P  + +QL++Y + ++  +  +     L+Y+   +V  +   
Sbjct: 825 YLEDYKTDR------EVHPERYHSQLALYREAVRKHWGIEP-EVRLVYLRTGQVVPLDAA 877

Query: 939 KLNKAFA 945
            L +  A
Sbjct: 878 ALKEGLA 884


>gi|71275278|ref|ZP_00651565.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Dixon]
 gi|71900136|ref|ZP_00682277.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
 gi|71164087|gb|EAO13802.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Dixon]
 gi|71730085|gb|EAO32175.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1]
          Length = 658

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 102/702 (14%), Positives = 214/702 (30%), Gaps = 129/702 (18%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
              + K +  S   G       A  L+               S F          +++  
Sbjct: 65  RERVAKQIKSSRADGLTICTFHALGLKFLQIEHDAVGLKPGFSVFDADDADAQINDLLHG 124

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
                  D K ++ ++++  +         +  +           L A Y+        +
Sbjct: 125 AKQDVIDDTKRRISRAKNAGLSPEQALAAARTTREME-----VATLYARYQARLIAFNAV 179

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI     +L+  D    +     + I ++L+DE QDT+  Q+ +++ L        
Sbjct: 180 DFDDLICLPVQILETSD---QVAMAWRERIGYLLVDECQDTNDAQYRLLKVLA------- 229

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S       VGD+ QSIY++ GA  + +L+ +R   +          +I+L  ++R  
Sbjct: 230 ---SPRGNFTCVGDDDQSIYAWRGANAENLLQLERDYPQ--------LKVIKLEQNYRCP 278

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             +L   + + +   +A   +  S                +++W                
Sbjct: 279 NRVLRAANALIAHNPHAHLKTLWSDQ---------KDGERIRIW---------------- 313

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                     +   +   A +I   IS +         G  + +   D  +L R    + 
Sbjct: 314 ----------ECRDSEHEAEKITAEISYL---------GDAKQVPWSDFCILFRGNFQSR 354

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            +    + L+    I           +   +K+L++  R +++ +DD +F+  ++SP   
Sbjct: 355 PLEKALQLLR----IPYHLTGGTAFLERQEVKNLLSWLRLLVNPDDDAAFLRAVQSPKRE 410

Query: 448 FSEDDIFKICTQRHETETVYE-------YIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                + K+       +            +Q+      +        + EL       S 
Sbjct: 411 VGSTSLAKLAELAAAKQMPMSRAAESLGALQQLPARAANGLNKFTDILRELRQQVSRVSA 470

Query: 501 HDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
            +    +        +   +  +E         ++E        E   +     +   + 
Sbjct: 471 AELVRRLAEVSGLLTELREQSNDEASYQRRKRNVEEL---AEWFEGGPFG--ASVGDLVS 525

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
           Q     +       N+VR+MT+H +KGLE   VF+V     V  H+              
Sbjct: 526 QLALLSRNDKDDGGNQVRMMTLHASKGLEFRYVFIVGCEDGVLPHEVSL----------- 574

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK---HSNTSN 672
                                   ++   +E  RLLYVG+TRA +QL +           
Sbjct: 575 ------------------------EEGNVQEERRLLYVGITRAKEQLWMSYSKCARRFGE 610

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
             +     ++D +       +    +       +        
Sbjct: 611 RVRFKPSRFFDELPAEELQRDGADPVVDAERKQERAKAGLAA 652


>gi|291483665|dbj|BAI84740.1| hypothetical protein BSNT_01975 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 759

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 96/619 (15%), Positives = 187/619 (30%), Gaps = 118/619 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +K +  + I++K   + + L++                  +       L      HYE  
Sbjct: 252 KKALYEEGIDEKEFPVDQALQQIGFWKNTYVPNERIPLKDEWEKQVYRL----YEHYERQ 307

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           KK++   DF+D+     +L         +  +      +ILIDE QD + +Q+++++ L 
Sbjct: 308 KKEHSQFDFDDMASACYELF---IERPDLLEQYQSRFTYILIDEFQDINPVQYKIMQMLA 364

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                     S  + L  VGD+ QSIY+F G+ P  +L  ++               I L
Sbjct: 365 ----------SPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYP--------GAKTIYL 406

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  I++  D V    +N    + +        ++R      V  +         
Sbjct: 407 TANYRSTHPIVSSADIVVKKNKNRYAKTLE--------AARDDIQVPVLFYPYD------ 452

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A  +   I   I                +D  VL 
Sbjct: 453 ---------------------EEEEATMVVSDIKEKIQNG----------ASPEDFAVLY 481

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           R       I        +   I    +           ++ ++A      +++D  +   
Sbjct: 482 RTNSGGRAIYERL----HQSSIPYTADRGVQSFYSRRIVRQILAYLYASQNEDDTEAIKH 537

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +L  P     +  +  +       +                    IK I       +   
Sbjct: 538 LL--PALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIKKIVPFFASLRTMK 595

Query: 500 PHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           P +  T   G     +    R        +  D L +      +       ++ + ++ +
Sbjct: 596 PVEAITFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKF-----KTIPDFLAHV 650

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +      K     +   V++MT+H +KGLE   V+++ T      H              
Sbjct: 651 DHMRAAEKNRTDEHG--VQLMTIHRSKGLEFKTVYVLGTVDGSIPHDFSL---------- 698

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                              +  +   ++  EE  RLLYV MTRA   L +   +N   + 
Sbjct: 699 -------------------ETARKGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKT 739

Query: 675 KSNQRTWYDMVYDSFHNDE 693
            +  R  Y ++  +     
Sbjct: 740 ANRSRFLYPLLQKARQPLH 758


>gi|225012049|ref|ZP_03702486.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
 gi|225003604|gb|EEG41577.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A]
          Length = 1059

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 150/892 (16%), Positives = 296/892 (33%), Gaps = 135/892 (15%)

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-KSQDEFIKIRDRFN 115
               +  E +FS L    L  +   +K + ++ ++    DL ++++ +  + FIK++ +  
Sbjct: 270  HFQKASEGKFSKLYDNQLELRLLGEKPLYSKGLDHSKKDLIDEIQPQLLNLFIKLKSKVG 329

Query: 116  TYKMFKSTL---ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT----NDLLKKRDVSAW 168
             + + K TL     L+L + +    E  + +  V      ++         L +   + +
Sbjct: 330  IFLLIKRTLNSLTPLSLLQKIEERLESIQNEKEVR-----LLGAFNSKISALVQDTDAPF 384

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            I  ++ +   H  +DE QDTS +QW  +  L  +    ++      +L  VGD KQ+IY 
Sbjct: 385  IYERLGERYLHYFLDEFQDTSKLQWSNLIPLISNALESESLSGEQGSLLIVGDPKQAIYR 444

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF---SIPENAQ 285
            F G + +   +   +  K       K  +  L +++RS   I+   +  F   S     +
Sbjct: 445  FRGGDIQ---QFVTLLNKTVNPFQVKAEVENLEINYRSGKAIVEFNNSFFMSLSKLVEVK 501

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              S+  +   + + ++ G    +       S+ D+Q     ++  +   ++         
Sbjct: 502  EYSQIYSEGSQQKPNKEGGYVQIDALPTGGSKEDNQELYILKTLNAVKRAIEAN------ 555

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
                                       A+DI VLVRKR     I             S++
Sbjct: 556  -------------------------YDARDIAVLVRKRDQASAIGEGL----IQEGYSIL 586

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             ++  ++ +   ++ ++A+ R  +   D +    +L          DIF   +     E 
Sbjct: 587  SSESLLVGNSKRVQFVLAILRLSVQPNDLVEHKLIL----------DIFWELSPLPNLEY 636

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQFISRFGN 523
                 +       S F+ + +    +  + +            IL         +     
Sbjct: 637  HEYIQKFVHLSSRSFFKELGEEFKFIFSLKKSTHSTALLASEYILERFT---DLLPANDP 693

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
                 L+ FL            S+   +   E+    ++ A  A  N + IMT+H AKGL
Sbjct: 694  F----LNAFLEDVFEFSSMQSQSITSYLKHWERQEDKLRIATPAGANAIHIMTIHQAKGL 749

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN---NIVSDLIKHLK 640
            E PVV L    + +      K           P    WI  SK       I   L     
Sbjct: 750  EFPVVILPFMDTALNPKIKEKLWFPFQEEPLSPIEWGWITASKEMKLYGEIGESLYAQYI 809

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
             S Q +   +LYV +TRA +QL I     +SN   +    +           E +   + 
Sbjct: 810  LSQQLDAYNVLYVALTRAKEQLYIITLEVSSNNTITYSHLFSYFAKQQGKKLEALAPYEC 869

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                 K    A +      +   L +  +                     + E  ++  S
Sbjct: 870  GTFEGKKIDKAKQNLVTEVKKIELNQGVST--------------------LWEKRLVAIS 909

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
              D K +          +  N+GL+IH++L  +        K  +             ++
Sbjct: 910  IPDIKIR----------EAQNKGLLIHEVLSKVVY--ADSYKKVLDDVFKIKKIKNDNQD 957

Query: 821  YKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
            +  ++  +  ++E+PM++          SE  V          + +  R D++  +    
Sbjct: 958  F--IINKVKDVIEHPMISKYFERNQHVLSEQDVLVP-----NGVTL--RPDRVNLLKDGG 1008

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY---PNKSLVCLLIY 926
              I +YKT      +          Q+  Y       Y       +   L+Y
Sbjct: 1009 AVIIDYKTGDPKEADG--------FQIDKYA----QIYISLNYFPVEKFLVY 1048


>gi|254515002|ref|ZP_05127063.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [gamma
            proteobacterium NOR5-3]
 gi|219677245|gb|EED33610.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [gamma
            proteobacterium NOR5-3]
          Length = 1042

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 146/903 (16%), Positives = 281/903 (31%), Gaps = 118/903 (13%)

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            E+  + L +  LT       ++   +  K S D  + +      F +  D     ++ + 
Sbjct: 225  EQCRAALINDQLTWPD--WVSLAKAKPAKASLDAAQPVADIAARFGEHPD--LCAELEEF 280

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            +     +A     HY+  K+   ++DF D       LL    V+  +R +++  +    +
Sbjct: 281  SRELFLIAADTLEHYQNIKQSKGLVDFIDQEQQLYALLAVPAVAGVLREELELLL----V 336

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDTS IQ  +   L+E              +  VGD KQS+Y F GA+P  +     
Sbjct: 337  DEFQDTSPIQLALFTRLSELAD----------NVIWVGDLKQSVYGFRGADPALMQAVID 386

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                             L  S+RS   ++   + +F        +   +     H+    
Sbjct: 387  ------GVTTGGNEPTVLDKSYRSQPALVNYTNALF--------VPAFAHKLPAHQ---- 428

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT- 361
                 V+L   +     +   P  ESW           +A      +A  IS ++     
Sbjct: 429  -----VELAPALSQLSTA---PAVESWQLAKGKKVDHYAA------VAEGISQLLSEGRE 474

Query: 362  --IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                   + R +   D+ VL +   D   +        +   I      R  L       
Sbjct: 475  VVDKETKQLRSLLPADVAVLCKTNADLADMAMAL----SQRGIPAAYK-RAGLLATPEAV 529

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
              +A  R ++SQED L+   ++ S   + S D            + + E           
Sbjct: 530  LTLACLRRLVSQEDSLATAEII-SLSGSLSPDAWL-----AERIDYLAENKTPNDWGYGY 583

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-----GNEVIDVLDEFLN 534
            K   ++  +  +     + +P +   L + A    +   +         +  D +D  + 
Sbjct: 584  KNSPLVG-LDRVKSRLIYLTPVEALDLAIHAGNVLETIETWGPNPAARQQRYDNVDALMK 642

Query: 535  FTLRN-----EQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                        +  ++   LI  L+              +  VR+MT H AKGLE PVV
Sbjct: 643  HAHDYIEQCSASHEPATTPGLILWLQTLAGDERDTQAVGGNAAVRVMTHHGAKGLEWPVV 702

Query: 589  FLVDTGSQVFSH------KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK-- 640
              ++  +++         +   K   +        +  W   + S    V  L + ++  
Sbjct: 703  IAMNLNAKLKPRLFGLTVQSSNKAVRLDDPLAGRTLRYWPRFNGSNEAGVRVLEEIVRGT 762

Query: 641  ------KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                     ++E  RLLYV +TRA D LI+    N                         
Sbjct: 763  EGTKALIKEEDEGLRLLYVSLTRARDTLILALPENVETGP-------------WMGLLNA 809

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               +  +  +     I+      +               +  +K  K    P+    +  
Sbjct: 810  HWFVPTSGQLQLPNGISIPTRVRNLAPGDAPPPAPGYYALAIKKPQKLDLLPLGKTPSSM 869

Query: 755  YILNPSTIDTKGKTNLESLLSDN-QTFNRGLIIH-KLLQVIFTLPEHKRKNFITSYCTKN 812
              +  +      +      +  N      G  +H  +   +F      R           
Sbjct: 870  MPIVTARAGRVLEIGASLGVKGNVDALTLGSAVHAAIAARLFGQDSKSR-------ILDE 922

Query: 813  AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
              +    + K+L   +    +  +        +  EV +  +     +   I G ID + 
Sbjct: 923  FDIAKNIDVKSLDDYLDGFFDC-VNKAFSPTAAGGEVPIVYR---NAEGQQIRGFIDMLL 978

Query: 873  ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
             S     + ++KT   V    E     +  QL  Y + +K +     + C + +VS  K+
Sbjct: 979  ESGSQRILIDHKTG--VWGVPEEAALRYSGQLEAYAEGIKRTTGCDRVCCWIHFVSLGKL 1036

Query: 933  FII 935
              +
Sbjct: 1037 LEV 1039


>gi|289522440|ref|ZP_06439294.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504276|gb|EFD25440.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 662

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 93/600 (15%), Positives = 172/600 (28%), Gaps = 125/600 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           +     Y +  K+   LD           L     +  +  K       +L+DE QD + 
Sbjct: 172 REFYDAYNKELKRQGALD---FDDLLLLPLHLLTTNKNVLLKERARFKWVLVDEYQDVNT 228

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+++I  L                +  VGD  QSIY + GA+   ++  +R        
Sbjct: 229 PQYKLIELLA-----------KSGNIMVVGDPDQSIYGWRGADMSIIMNFERDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I L  ++RST  IL   + V       +             +++ G   TV L
Sbjct: 273 ---GAKVITLDQNYRSTGMILDAANAVIKNNIERRPKDLW-------TANQQGTPVTVYL 322

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                        ++  + A+ IA  I  +  +           
Sbjct: 323 ----------------------------ANTDRMEAQFIADEIRKLCRSG---------- 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               DI VL R    +            +  I           +   +KD+++  R  ++
Sbjct: 345 YSFDDIAVLYRINAMSRSYEQDL----MNRGIPYKIVKGVSFYERKEVKDVLSFMRLAVN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFK-------ICTQRHETETVYE--YIQKFANCGISKF 481
             D  +   +   P        +         I +   +   ++E  +            
Sbjct: 401 PWDAAALHRIGNVPSRGLGAKSLEAFEKSIASISSGHEDPLPLWEEVHSSDALPLKGKAK 460

Query: 482 QHVIKYIHELIH-IAQFCSPHDFFTLILGAKKG---RQQFISRFGNEVIDVLDEFLNFTL 537
               +    +I  +++     D  + I+         ++          + + E L+   
Sbjct: 461 AGARELAGHMIQILSRSGDVADVISYIMEEMGYGLFLREQYPEDWESRSENIYELLSV-- 518

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                    L + +S +  Y          + + V ++T+H AKGLE PVVFLV     +
Sbjct: 519 ---NVEGGDLAKFLSVIALYSDADV--DETSGSRVNLLTLHAAKGLEFPVVFLVGMEENI 573

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H                                      +  S  EE  RL YVGMTR
Sbjct: 574 FPHS----------------------------------RAKMSDSELEEERRLCYVGMTR 599

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A ++L +                +   + +    ++ V  + L                H
Sbjct: 600 AMEKLYLTGAQRRMLFGNLQYNAFSRFLEEIPDRNKVVYDLTLEEEEVPINVGRRSNRRH 659


>gi|255020481|ref|ZP_05292546.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC
            51756]
 gi|254970091|gb|EET27588.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC
            51756]
          Length = 1185

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 131/841 (15%), Positives = 274/841 (32%), Gaps = 101/841 (12%)

Query: 101  KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
            +   D F+    ++          A    A  + A Y E K++   L+F DL     + L
Sbjct: 317  QAQFDTFLAALQQWQVDDEVLHGQALAQAAASMAALYGEEKQRLRQLEFNDLSRALWNGL 376

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +       +   + Q    ILIDE QD+S  Q+ +   +        ++      +  +G
Sbjct: 377  RGPG-GEALAEALRQRFPVILIDEFQDSSARQYAIFERIYRPSEPWPDS-----LMLLIG 430

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D KQSIY F GA+    LR +                  L  ++RS   ++  ++ +++ 
Sbjct: 431  DPKQSIYRFRGADLDSYLRARAD---------TAPRHYVLGTNYRSAEPLVGALNALYAR 481

Query: 281  PENA---QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
             +                      +   G  Q W+               ++  +  +L 
Sbjct: 482  ADERCPGGAFDYRGEGDDPLPYQAVAAAGRSQRWQL------GGQEGPAITFAQHPLALT 535

Query: 338  QESSASILARRIAYTISNMIG---TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +E   +  A   A TI+ ++G   +  + ++GK R + A DI +L+R RK+  ++     
Sbjct: 536  KEEFLTHFAEWTAATIAQLLGDSTSGFVGADGKLRRVGAGDIAILLRDRKEAAIM---LS 592

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
             L      +   +++  +      ++L      +L  ED+ +  C L  PL   ++ D++
Sbjct: 593  ALHRRGLPAAFLSEKQSVYHSPEAEELRLWLFALLHPEDEAALRCALALPLLGLAQHDLW 652

Query: 455  KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
            ++       E ++    +           +  +   L  + +          IL    G 
Sbjct: 653  RL----DTDEGLWAQEVERLREH----ARIWAHSGILTTLHRRLHQQATAARILARPDGE 704

Query: 515  QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP---PTIKRAHSANHNE 571
            ++  +         L E L    ++ +   + L+ L  E +       +      ++ + 
Sbjct: 705  RRLSNLL------HLGELLQQASQHLEGREALLEHLQREQDSEDNPADSHVLRLESDAHC 758

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            +RI T+H+AKGL+ P+VFL    +            +                  S  + 
Sbjct: 759  IRIRTIHSAKGLQYPLVFLPFIAATRKDGNVPPWQVVTDDD-------------HSTLSW 805

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
             S   + + +    E  RLLYV +TRA   L +   +  +       R+    +  +   
Sbjct: 806  QSPSAELMDRERLREDLRLLYVALTRAEYALWLGLAAGKTASTPLWWRSAVGRLLGADEG 865

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET-------IKQLMDEQKIPKKLF 744
                + ++          +A +     P     E  E          +   +  I     
Sbjct: 866  KTPDQCLETWKRYPACRVLAADTIPSAPAPRFAEPPEPRRTPPVYTARFERDWSIHSFSR 925

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---FTLPEHKR 801
                   +     +P  +D   +   +   +  Q    G  +H+LLQ +      PE  R
Sbjct: 926  LSQSLQTSVGPYPSPDRLDPGAEAAGQGWHTFPQGPGAGRFLHELLQWLWRDGRWPEDWR 985

Query: 802  KNFITSYCTKNAKLWPA---KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK---- 854
            ++F+     +    W +     +  L  S    L            + +E+         
Sbjct: 986  EDFLHRCDERGYAPWGSVLVHWFAVLRASPLGSLGT-TFAEL--RGARTEMPFWFPSQHL 1042

Query: 855  -------------INCPKKDI--------IISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
                         +   ++ I        +  G +D +       ++ +YK+      + 
Sbjct: 1043 PTNQLDTLCRQYLLPGRERPILGKQNLHGLFHGFMDLVFAVDGRYYVLDYKSTRLGENDA 1102

Query: 894  E 894
             
Sbjct: 1103 A 1103


>gi|170732538|ref|YP_001764485.1| exodeoxyribonuclease V subunit beta [Burkholderia cenocepacia MC0-3]
 gi|169815780|gb|ACA90363.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia MC0-3]
          Length = 1235

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 125/985 (12%), Positives = 262/985 (26%), Gaps = 129/985 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             +W      +  + +     +   +      A  L   +      +  + L    L    
Sbjct: 239  QMWAAERDAIDALLRAAQPVLNQRSHKPDAVADALAAWAVHFEQGDATAALPKAALKLTQ 298

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T       +     +    +     +              +             L     
Sbjct: 299  TALTKATKKGGATPAHAFFDVADALEAAVAAAEAAQRARWLALIAEWLDMAPGELAER-- 356

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 357  --KRTRRVVSFDDLLANLYHALHAHP---WLAETLRARYPAALIDEFQDTDPLQFAIFDR 411

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 412  IFA----------PRGPLFLVGDPKQAIYSFRAADLHTYLAARAR----------ASACY 451

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   ++ F     A  L       +R  +          +    V + 
Sbjct: 452  TLAVNQRSTPAIVDACNRFFLSNPRAFVLDGLDYYAVRAGTR---------VRAPFVDET 502

Query: 319  DSQCNPQQESWTSYFDS--LPQESSASILARRIAYTISNMIGTDTIFSNGKKR-VIQAKD 375
            D         W        L +  + +  A+  A  I+ ++              +   D
Sbjct: 503  DPGPAGDFRVWALPGGEGTLLKRDAQAQAAQACAAEIARLMRGAREGRVRLGESPLSPGD 562

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I VLV+  +   L+  +       + I  V   +  +      + L  +   I +  D  
Sbjct: 563  IAVLVQTHRQGSLVKRVLAT----WGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLR 618

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                 L S  F      ++++     +  +        +   +S  +   +Y        
Sbjct: 619  RLRAALASDWFGLDAGALWRMEQGDGDAPS--GASAADSADAMSWVERFSRYRLLWRERG 676

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-EL 554
                   F   +  A++             I+ L E        +     +L+ L +  L
Sbjct: 677  FAVMWRTFTRELRIAERLMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRL 736

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +      +    ++ N V+I+TVH +KGLE  VVF                +      +D
Sbjct: 737  DGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPSSALPDAREYHD 796

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSN 672
            D G  +        +   +   +   +    E  RL+YV +TRA  +  +    + ++ +
Sbjct: 797  DAGDAVLHYGC--DDEAAAHAARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRS 854

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +++ +     +V  + H  +         +  +  W A           P+        
Sbjct: 855  TREARRSVLNWLVAGAGHAFDAWLDEPPDEAALETAWRALAGGPVSVAPLPVPARRERLA 914

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------------------------- 764
               +           +   +   + + S++                              
Sbjct: 915  AGHDASQTLAARHATRVLRDAWRMASFSSLTASMAREEAGVAAVPDDELRPDHDALAAVT 974

Query: 765  -----------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                             + +L   +    G  +H+L ++                     
Sbjct: 975  PDGELIFADTVATDPPDDDILVFPRGAAAGECLHRLFELSRFTEPESWHAAALGALHDRP 1034

Query: 814  KLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSV------------- 851
                      L   + RL+++           +          E+               
Sbjct: 1035 VEAEPALAARLPAMMVRLVDDVVHTELVPGMRLVDLDPAKRLDEMGFLFPAPSLDLLALR 1094

Query: 852  ---------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH---------HVPQEI 893
                        +        I G ID I       +I ++K++H             ++
Sbjct: 1095 RLLVAHGYPDVALEAGTLAGFIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGPRALDV 1154

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNK 918
                + +  Q  +Y   L      +
Sbjct: 1155 AMADHAYHLQALLYTVALHRYLRGR 1179


>gi|197294727|ref|YP_001799268.1| ATP-dependent DNA helicase [Candidatus Phytoplasma australiense]
 gi|171854054|emb|CAM12027.1| ATP-dependent DNA helicase [Candidatus Phytoplasma australiense]
          Length = 713

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 97/564 (17%), Positives = 174/564 (30%), Gaps = 135/564 (23%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L   +   Y++  +KN ++DF DLI+ T  LLK+      I+    ++  +IL+DE QDT
Sbjct: 175 LIVKIKNQYQKYLQKNNLVDFNDLILYTYQLLKEYPE---IKQFWQKKFQYILVDEFQDT 231

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
              Q++++  LTE              +F VGD  Q+IYSF GA                
Sbjct: 232 DFYQYQILTFLTE----------KNPCIFVVGDPDQNIYSFRGACFGNSQLFLNKF---- 277

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   I  L  ++RS+ +IL   + + S  ++                         
Sbjct: 278 -----NPQIYVLKQNYRSSENILEKANLLISYNKD------------------------- 307

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                    +  +    + +   + DS  +       A+ I   I +++           
Sbjct: 308 --HPFKKKLNSVKGKGTKVNAHFFVDSRIE-------AQYIVQKIKHLVQ---------I 349

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                +D  +L R       +            I  +            +KD +A     
Sbjct: 350 YHYNYRDFAILYRVNSLGHFLEKYL----ISAGIPYMFLGNLSFYQKKVVKDFLAYLHLA 405

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK------FANCGISKFQ 482
           ++   D     ++  P     +  I  +     E E  +  I K       ++    +  
Sbjct: 406 VNPLQDFYLRRVINVPKRQIGKITITCLEKIVQEKERSFFEILKDYKDIPVSDKTQKQLY 465

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV-------------L 529
                I EL +        +  + I+     + Q+  +   E                 +
Sbjct: 466 QFYCLIEELNNKIINNE-FEKLSDIITYVDQKTQYSYQISLETQKNPQKANEEQSSLVAI 524

Query: 530 DEF---LNFTLR-NEQNSYSSLQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGL 583
           +E    LN      + ++   +   + E+     T     S N   N V++ T+H  KGL
Sbjct: 525 EELKSILNQIDESFQGSNLQKINNFLEEVSLNNETKINNSSGNKANNRVKLATIHKVKGL 584

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VVFL     + F                                             
Sbjct: 585 EFKVVFLAGLEKEFF----------------------------------------DDLDD 604

Query: 644 QEEYNRLLYVGMTRASDQLIICKH 667
            +E  RL YV +TRA ++L +   
Sbjct: 605 IQESRRLTYVAVTRAQEKLFLTGV 628


>gi|21223552|ref|NP_629331.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|9714471|emb|CAC01313.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 1159

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 127/978 (12%), Positives = 269/978 (27%), Gaps = 152/978 (15%)

Query: 37   LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            L + +G    +   + L               L    +      +  + T+    +   +
Sbjct: 137  LRLLSGPEQDVTVRELLAGQVD-------LERLGLAHVRWPDELRACLTTRGFADEVRAV 189

Query: 97   KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                  ++   + +          +        A    A Y +      VLD+ +L+   
Sbjct: 190  L-----ARSRELGLGPDALAAFARRIGRPDWRAAAVFLAEYLDVLDLQGVLDYAELVHRA 244

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
              L ++ +V+A     +  + + + +DE QDT   Q  ++ +L +            RTL
Sbjct: 245  VLLARRPEVAA----HLTAQYDAVYVDEYQDTDPAQVRLLHALAD----------GGRTL 290

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             A GD  QSIY+F GA+   +L       +     G+   +  L  + RS + +L     
Sbjct: 291  VAFGDPDQSIYAFRGADVNGILDFPTAFPR---ADGRPAPVGVLRTARRSGSGLLAATRL 347

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
            +       +  ++           R    G V+ +    +  +              D +
Sbjct: 348  LTQRMPLTRLPADKVRAHRELTPVR--GGGRVEAYTYPTAGTELDNIADILRRAHLEDGV 405

Query: 337  PQESSASIL---ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
            P    A ++   +R I      +             +    +  V          +    
Sbjct: 406  PWRDMAVLVRAGSRTIPTLRRALTSAGVPLDIDGDDLPLRHEPAVAPLL-TALRAVAEAE 464

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKD-------------------------LMALGRFI 428
                                D  A  D                            L R  
Sbjct: 465  ADTGARTGERFGALGSEADADPRADADADADADADAYVDADADAYVDEGGDAATKLSRGE 524

Query: 429  LSQEDDLSFV-------CMLKSPLFNFSEDDIFKICTQ---------------RHETETV 466
             +   D            +L SPL      D+ ++                    E    
Sbjct: 525  HAYRADEPCWLSTETALTLLTSPLAGMDAADLRRLGRALRDERRAAGNPLPPPSDELLAQ 584

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRF 521
                 +        +    + +  L+  A+       S  +    +        +     
Sbjct: 585  ALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGSAEEALWDLWDGTPWPTRLERSA 644

Query: 522  ------GNEVIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANH 569
                  G      LD     F       E+         + E++            +   
Sbjct: 645  RRGGAAGRNADRDLDAVCALFATAARAEERTGGRGALNFLEEIDAEDIAADTLARRAVRP 704

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            + VR+MT H +KGLE  +V +      ++     +   +        G+   +       
Sbjct: 705  DAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSPG---- 760

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDS 688
                        +   E  RL YV  TRA ++L++      +++     R   ++ V  +
Sbjct: 761  ------------ALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGVEPA 808

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                   + + +   + +      +     P      R       + ++     + S   
Sbjct: 809  DVTGRPRRPLAVAALVAELRATTVDPRVSEPLREAAARRLARLAALTDEDGRPLVPSAHP 868

Query: 749  ----------------NDINEPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRG 783
                             D ++P  L+ S +D       L+  L                G
Sbjct: 869  YRWWGMWDPTESKVPLRDRDQPVTLSGSALDQLANTCALQWFLGREVKADAPATTAQGFG 928

Query: 784  LIIHKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPM 836
             ++H L  +V            +            +A    A+E  N  +++ R L+  +
Sbjct: 929  NVVHVLADEVASGHTPADLAVLMERLDSVWNALAFDAPWKSAQEKANARVALERFLKWHV 988

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEH 895
            M  A      SE      +   + ++ I G++D++        ++ ++KT    P   E 
Sbjct: 989  MDRAGRTPVASEHDFDVTLEAGEYEVRIRGQMDRVETDADGRAYVVDFKTGKQAPTSSEV 1048

Query: 896  IPYTHIAQLSIYEKILKD 913
                   QL++Y+  +++
Sbjct: 1049 AR---HPQLAVYQLAVRE 1063


>gi|255767266|ref|NP_389064.2| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|225184893|emb|CAB13039.2| putative ATP-dependent DNA helicase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 717

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 96/619 (15%), Positives = 187/619 (30%), Gaps = 118/619 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +K +  + I++K   + + L++                  +       L      HYE  
Sbjct: 210 KKALYEEGIDEKESPVDQALQQIGFWKNTYVPNERIPLKDEWEKQVYRL----YEHYERQ 265

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           KK++   DF+D+     +L         +  +      +ILIDE QD + +Q+++++ L 
Sbjct: 266 KKEHSQFDFDDMASACYELF---IERPDLLEQYQSRFTYILIDEFQDINPVQYKIMQMLA 322

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                     S  + L  VGD+ QSIY+F G+ P  +L  ++               I L
Sbjct: 323 ----------SPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYP--------GAKTIYL 364

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  I++  D V    +N    + +        ++R      V  +         
Sbjct: 365 TANYRSTHPIVSSADIVVKKNKNRYAKTLE--------AARDDIQVPVLFYPYD------ 410

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A  +   I   I                +D  VL 
Sbjct: 411 ---------------------EEEEATMVVSDIKEKIQNG----------ASPEDFAVLY 439

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           R       I        +   I    +           ++ ++A      +++D  +   
Sbjct: 440 RTNSGGRAIYERL----HQSSIPYTADRGVQSFYSRRIVRQILAYLYASQNEDDTEAIKH 495

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +L  P     +  +  +       +                    IK I       +   
Sbjct: 496 LL--PALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIKKIVPFFASLRTMK 553

Query: 500 PHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           P +  T   G     +    R        +  D L +      +       ++ + ++ +
Sbjct: 554 PVEAITFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKF-----KTIPDFLAHV 608

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +      K     +   V++MT+H +KGLE   V+++ T      H              
Sbjct: 609 DHMRAAEKNRTDEHG--VQLMTIHRSKGLEFKTVYVLGTVDGSIPHDFSL---------- 656

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                              +  +   ++  EE  RLLYV MTRA   L +   +N   + 
Sbjct: 657 -------------------ETARKGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKT 697

Query: 675 KSNQRTWYDMVYDSFHNDE 693
            +  R  Y ++  +     
Sbjct: 698 ANRSRFLYPLLQKARQPLH 716


>gi|262374048|ref|ZP_06067325.1| exodeoxyribonuclease V, beta subunit [Acinetobacter junii SH205]
 gi|262311059|gb|EEY92146.1| exodeoxyribonuclease V, beta subunit [Acinetobacter junii SH205]
          Length = 1239

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 135/956 (14%), Positives = 280/956 (29%), Gaps = 147/956 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            ++L Q  +T    E   +  ++F +Q+    K +      K        + +   +   +
Sbjct: 275  ESLPQLLKTLIETENLQVFDAYFSSQRDAAFKFLDKLNEQKIFKKCPADISEGFYQHPTL 334

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYE---------EAKKKNCVLDFEDLIINTNDLLK 161
                   +  + T       +     Y          +  ++     F   I   +D LK
Sbjct: 335  LQLQRLLQSLQQTQQKFEQLQVYLKAYLCVEVKKRLPQILQQKGETTFAQQIKTLSDALK 394

Query: 162  KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
              +        +      IL+DE QDT+  Q +++ S+                +  VGD
Sbjct: 395  G-EQGQRFAVFVQARYPLILVDEFQDTNQDQDDMLASIWR-----HPQRYQKGCMIMVGD 448

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             KQ+IY F G +    L   +          ++    +L  + RS  +++ VVD +F   
Sbjct: 449  RKQAIYGFRGGDMLTFLNAYQDI------MAKQGREYKLIHNHRSVKELVEVVDALFQRQ 502

Query: 282  ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
             +              R                    D Q NP    W    DS  Q   
Sbjct: 503  IDFGEQVIYDPIQAGERPHPA-------------LIDDHQINPAPLRWLQLADSKEQ--- 546

Query: 342  ASILARRIAYTISNMIGTDTI----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                A ++A+ I +++    +         ++ I   DI VL R  +    +    + L 
Sbjct: 547  ----ATQVAWKIQSLLNQAHLNQLYLQGETRKAIDEDDIAVLSRSHRQLDEVQQALQHL- 601

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                I V    +  + D    +D+ AL   +L   D+      L S LF F  + +  + 
Sbjct: 602  ---GIRVNRPSKRSVFDSPIAQDVAALLTALLHPFDEAKLKRALLSRLFGFDLNRLLALE 658

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                                       ++   +L  +         +   L   +  QQ 
Sbjct: 659  QS------------------PIGLSDYMQSFDDLREMWINQGFLVAWQQCLNQFEIWQQL 700

Query: 518  ISRFGNEVID---VLDEFLNFTLRNEQ--NSYSSLQELISELEQYPPTIKRAHS---ANH 569
            +     +       L    +   ++ +      +L     +    P   +       ++ 
Sbjct: 701  VITQSKDNERAVVNLRHLTDILSQHSEHVQGPQNLYHWYLKQLNSPSDREWELEHKLSSE 760

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP--SLNDDPGIPIWIPQSKS 627
              V++MT+H +KGLE  +VFL+       +                        +     
Sbjct: 761  AGVQLMTIHQSKGLEFKIVFLLGANKSPSNQSEALNFSTTEIQLPETGQIRTQRVVAIAD 820

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD---- 683
            +N +    I   ++  Q E NRL YV +TRAS ++         ++ K++   ++     
Sbjct: 821  KNFLQDTEINQHQQRAQAEQNRLWYVALTRASHRVYAVFEPEKGDKAKASALAFWKNQAE 880

Query: 684  -MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
               +    ++  +++   T    K        +   P      R +T    + +    K 
Sbjct: 881  VFQHIYSADEACLQERPATLRTAKMSQDLTLAAQPLPTQRFYARGKTSFSYLAQHLKHKA 940

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLS---------DNQTFNRGLIIHKLLQVI 793
                   ++++        ++       E  +S           +    G  +H++ ++I
Sbjct: 941  NRMDRLANMDQNLQQAEDELELTQIIIDERPVSQPIAWIKQNFPKGALAGNFLHEIFELI 1000

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAK-------------EYKNLL-----LSITRLLENP 835
                       I        +   +              + + LL       +  +L  P
Sbjct: 1001 DFQQPDTWVEEIRRRFKNTYQSLWSDLFSLYQQQFPEQPQAEQLLYQWIAEWLQDVLATP 1060

Query: 836  -----MMTTAMSCDSYSEVSVSGKINCPK------------------------KDIIISG 866
                  +   ++    SE      ++                               ++G
Sbjct: 1061 LNGEFQLKQLIAGQYLSECPFYLSLSDRVLAMQRIQQLFEEYDIFMPELLEAKSARYLNG 1120

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQE----IEHIPY-----THIAQLSIYEKILKD 913
             ID +    Q   I +YK+++    +     E I       ++  Q  +Y   L  
Sbjct: 1121 SIDLVYFDGQRYHIADYKSNYLGADQSDYGAEQIADSMSLSSYWLQAGLYLVALHR 1176


>gi|87311977|ref|ZP_01094086.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
 gi|87285281|gb|EAQ77206.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645]
          Length = 701

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 106/596 (17%), Positives = 199/596 (33%), Gaps = 117/596 (19%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L+      Y+ + K    +DF+DL++ T +L  + D    IR +   + +H++IDE QDT
Sbjct: 201 LSAMAYRRYQNSLKTCGAVDFDDLLLLTEELFTEHDD---IRDEEASQFDHLMIDEYQDT 257

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ ++R L E          + R L  VGD+ QSIYS+ GAE + +LR +       
Sbjct: 258 NGSQYRIVRGLAE----------AHRNLCVVGDDDQSIYSWRGAEVQHILRFQHDWP--- 304

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                +  +I L  ++R TA IL + +++            ++                 
Sbjct: 305 -----EAKVIYLKDNYRCTAAILELANRLIQFNSTRYDKDLEAARF-------------- 345

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                           + + W    +    E     +AR+++                  
Sbjct: 346 -------------GGERPQIWQFKDEEKEAEEVVKDIARKLSE----------------- 375

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              + +D  +L R  +         R +K    I  +        D   ++DL++  + I
Sbjct: 376 PEFEPRDFAILFRTNEQPRAFEQQLRSMK----IPYILIGGMSFFDRKEVRDLISYLKVI 431

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYI------QKFANCGISKF 481
            S  D++S + +L +P     +  +  +  T   E   ++E        +  +    +  
Sbjct: 432 HSPIDEVSLLRILNTPPRGIGQQTVKTLMDTAVTEGVPLWEVFPKVRSIRNISENAANAV 491

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFT 536
                 I                  ++G  + +++                 +++ +N  
Sbjct: 492 IDFSSLIRRYQKRFDTEPMSHVVRSLIGDIRYQKELERLYPDPNDRESREMAIEQVVNAV 551

Query: 537 LRNE-QNSYSSLQELISE--LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              E      +L   + +  L       ++      N V +MT+H AKGLE P V+LV  
Sbjct: 552 SAFETNKKKPTLGGFLDDSALSGGDFDNEKEKQLQRNGVVLMTLHAAKGLEFPNVYLVGM 611

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +  H    K                                  + +  EE  RL YV
Sbjct: 612 EEGILPHARSVK---------------------------------EEGAAVEEERRLCYV 638

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           G+TRA D+L     ++     K         +Y+     E   K        +D  
Sbjct: 639 GITRAQDRLTFSLATSRKRWGKPRPTDTSRFLYEITGQAENAAKSAQMAKSPRDRV 694


>gi|312214725|emb|CBX94679.1| similar to ATP-depentend DNA helicase [Leptosphaeria maculans]
          Length = 1044

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 116/678 (17%), Positives = 204/678 (30%), Gaps = 156/678 (23%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + + Y+E  K   +LD++DL++   +LLKK              I  +LIDE QDT+ 
Sbjct: 192 ALVYSSYQEHLKAANLLDYDDLLVRCVELLKKSPSCV-------STIQAVLIDEYQDTNN 244

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+E+++ L +          S R +  VGD  QSIYSF  AE + + R +    +    
Sbjct: 245 IQYELMQLLAQ----------STRRITIVGDPDQSIYSFRSAEIENLRRMRADYPESI-- 292

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I L  ++RS+  IL     V    E+    S  +T  +  + +          
Sbjct: 293 ------VIHLENNYRSSGRILASAMAVIEQDEHRPQKSLIATHGVGEQPTLRHLA----- 341

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                         SA + A+ I   I                +
Sbjct: 342 ------------------------------SAFVEAKWIVEEIQR-------SKTLTAGL 364

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           ++  D  +L+R  + +  I            +           D   I+ ++   R I  
Sbjct: 365 LEYSDYAILLRSSQLSLQIERAL----GQAGVPYRMVAGTKFFDRAEIRIVLDYLRVISQ 420

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFANCGISK--------- 480
            + + +   ++  P     +  I  +  +      T++  + + A               
Sbjct: 421 PDHNDAVARIINVPSRKVGDVTIKNLLEEAETRHITLWSLVLETAQGRRKPQTMVSAQAQ 480

Query: 481 --FQHVIKYIHELIHIA-----QFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLD 530
              +  +  I            + C+     + +L         +Q       +    ++
Sbjct: 481 KGMEQFVNIILTSRQKLLPGEGEDCNLLGLISHVLQKISFQAYLRQMHKENWEDRWANVE 540

Query: 531 EFLN---------------------FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
           E +                           EQ   S+   L   L     +         
Sbjct: 541 ELVAQAMQMATAAANGEEIIDDALPVVEGVEQRQDSAADILSKFLANVTLSSAADQEGGD 600

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            N+V I T+H AKGLE PVVFL         H                            
Sbjct: 601 LNQVTISTIHAAKGLEWPVVFLPAMYDGSIPHS--------------------------- 633

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                      +   Q+E  RLLYVGMTRA   L +      S ++++    +       
Sbjct: 634 -----------RAEDQDEERRLLYVGMTRAQGLLYLSCPVRQSGQEQTTLSRFVSDRKLQ 682

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN-----TPLEREETIKQLMDEQKIPKKL 743
               +R   +    S   +           P +     + LER E  K     ++I    
Sbjct: 683 KLFRDRGPDLAFNRSAIPNLAGILRRPCPEPADIMATHSLLERLEDDKYPATREEIDDDS 742

Query: 744 FSPIKNDINEPYILNPST 761
                +  ++     PST
Sbjct: 743 SRWGASYDDKFGSTGPST 760


>gi|229149252|ref|ZP_04277491.1| UvrD/REP helicase [Bacillus cereus m1550]
 gi|228634224|gb|EEK90814.1| UvrD/REP helicase [Bacillus cereus m1550]
          Length = 957

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 127/868 (14%), Positives = 265/868 (30%), Gaps = 151/868 (17%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
           K+S +L + + K  +E + I       K+  S  A L +       YE+   +   LDF 
Sbjct: 150 KQSQELLKWINKLSEEIVDI------NKLIDSDEARLRVLGKCYKVYEQLLIEENALDFS 203

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
            + + T +LL+  +    +R  ++ ++++++IDE QDT+ IQ +++  L           
Sbjct: 204 TIQLETYNLLQNHED---VRNNLNAKLHYLMIDEFQDTNTIQEKLVFLLAG--------- 251

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              + +  VGD+ Q +Y F GA  + +L   +   K           +EL  ++RS   I
Sbjct: 252 -KQQNICVVGDDDQGLYRFRGATIRNILEFPQNFPKGI------CQQVELSTNYRSNPAI 304

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +   ++                       +      T +  +++ +   ++ N +     
Sbjct: 305 VQFYNQWMEQN------------------NWSQNGTTYRFDKKITAHESNKVNQKTVVKV 346

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           S  D L    S       +   +  M     I             +  L R  K++ ++ 
Sbjct: 347 SGEDGLDDWESE------VYLFLQAMKKEGGISD--------WNQVAFLFRSVKNSRVLN 392

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIK-DLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                   +  I V      +  +   I+  L A+            +      P + F 
Sbjct: 393 --LSRYLEERGILVYSPRSNLFFERREIRLALGAILFLFPMYAQLRKWNDSAFLPEWEFY 450

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
           +  + +   +  + E               K +  +  +++ +  A     + F    L 
Sbjct: 451 DACLLEFAEELRKPE-----NHDLLRWCKEKARTHM-TLNKNLDYAFSGLFYQFIQFELF 504

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ--------------ELISELE 555
           +        +   +  +  L +F     + E   + S+               + I  L 
Sbjct: 505 SDLLSDNVFTVKDSREVRNLSQFSKLLTKFEYLHHISVFTQRNIGDSVVRFFNQYIRFLL 564

Query: 556 QYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           Q         S       V  +T+H +KGLE PVV +    S            +     
Sbjct: 565 QGGIDEYEDDSEYAPSGCVSFLTIHQSKGLEFPVVIVGSLESTPRKQYTDIDELLQTDFY 624

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
             P                    + ++++   ++ RL Y   +RA + L++    N +N 
Sbjct: 625 QKPPF------------------EPIERTKIYDFYRLYYTAYSRAQNLLVLSCQENVANG 666

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
             +                          +I    +           + P      + Q+
Sbjct: 667 AGTR-------------------------NIPSKYFTESYRDLKSWRDEPTIYNIELAQV 701

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
            D     +  F+   N           ++  K    L            G ++H+ ++ I
Sbjct: 702 KDVNIKREYSFTSHINLFET------CSLQYKFYKELGFAPVRQGATIFGTLVHQTIEDI 755

Query: 794 FTLP---------EHKRKNFI----TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
                        E   +++          +       +  +  L  +   +E       
Sbjct: 756 HKSALKNEAYLITEANIEDWFNTNYRHLSKRERVYLAPQTQEAALKQVKSYVEKQYGDW- 814

Query: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY-T 899
            S    +EV VS      K   I+ G ID +      + I ++K+        E      
Sbjct: 815 -SHIQEAEVDVS----LVKDKYILKGTIDLVKGDGDTVEIVDFKSEKKPDLVKEQDALYR 869

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           +  QL +Y  ++++    K     L Y 
Sbjct: 870 YKRQLEVYAHLVEERTNYKVSKMHLYYT 897


>gi|134295236|ref|YP_001118971.1| exodeoxyribonuclease V subunit beta [Burkholderia vietnamiensis G4]
 gi|134138393|gb|ABO54136.1| exodeoxyribonuclease V, beta subunit [Burkholderia vietnamiensis G4]
          Length = 1234

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 121/980 (12%), Positives = 262/980 (26%), Gaps = 131/980 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             +W      +  + +    ++   +      A      S         + L    L    
Sbjct: 240  QMWADERDAIDALLRAAQPALNQRSHKPEAIADAFGAWSAHFAQRNAAAALPKAALRLTR 299

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T       +          +     +              +        +    L     
Sbjct: 300  TALVKATKKGGATPEHAFFDVADALEAAVAAADAAQRARWLALVADWLDSAPAELAER-- 357

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L+      W+   +       LIDE QDT  +Q+ +   
Sbjct: 358  --KRTRRVVSFDDLLANLYQALQAHP---WLGETLRARYPAALIDEFQDTDPLQFAIFDR 412

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 413  IFA----------PRGPLFLVGDPKQAIYSFRAADLHTYLAARAR----------ASACY 452

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   +  F     A  L       +R           V+      +  
Sbjct: 453  TLAVNQRSTPAIVDACNSFFMSNPRAFVLDGLDYYAVR-------AGTRVRAPFIDETDP 505

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDIL 377
                + +  +      +L +  + +  A+  A  I+ ++              +   DI 
Sbjct: 506  GPAGDFRIWALPGGDGTLHKREAQAQAAQACAAEIARLMRGARDGHARLGDTPLSPGDIA 565

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VLV+  +   L+  +       + I  V   +  +      + L  +   I +  D    
Sbjct: 566  VLVQTHRQGSLVKRVLAT----WGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLRRL 621

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIA 495
               L +  F    D ++++     +                  S+++ + +     +   
Sbjct: 622  RAALAADWFGLDADALWRMEQGDGDASRDAADGADAMSWVERFSRYRLLWRERGFAVMWR 681

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-EL 554
             F         ++    G ++            L E        +     +L+ L +  L
Sbjct: 682  TFTRELRIAERLMAGADGERRVTDIN------HLAELTQARASAQPGIAPTLRWLAAQRL 735

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +      +    ++ N V+I+TVH +KGLE  VVF                +      +D
Sbjct: 736  DGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPTSALPDAREYHD 795

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSN 672
            D G  +        +   +   + + +    E  RL+YV +TRA  +  +    + ++ +
Sbjct: 796  DAGDAVLHYGC--DDEAAAHAARQVLREQAAERARLVYVALTRAVYRCYLVAGPYLSSRS 853

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +++ +     +V  +  + +         +     W A           P+        
Sbjct: 854  TREARRSVLNWLVAGAGRSFDAWLDEPPDEAELGAAWQALAGGPLSVAPLPVPARRERVA 913

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--------------------------- 765
               +           +   +   I + S++                              
Sbjct: 914  AGHDDSQALAARRATRMLRDAWRIASFSSLTASMAREEAGVASVPDDELRPDHDALAAVS 973

Query: 766  ------------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                             + +L+  +    G  +H+L ++                     
Sbjct: 974  ADLALVGADTVVSAPPDDDILTFPRGAAAGECLHRLFELSRFTQPDSWLQAALGALHDRP 1033

Query: 814  KLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII- 863
                      L   + RL+++           +          E+         +   + 
Sbjct: 1034 VEAEPDLAVRLPAMMVRLVDDVVHTELVPGMRLADLDPARRLDEMGFLFPAPSLELGALR 1093

Query: 864  ---------------------ISGRIDQISISQQNIFIFEYKTHH---------HVPQEI 893
                                 I G ID I       +I ++K++H             + 
Sbjct: 1094 RLLVAHGYPDVALEAGALAGFIKGFIDMIVEHDGRFWIVDWKSNHLGNTPDAYGPRALDA 1153

Query: 894  EHIPYTHIAQLSIYEKILKD 913
                + +  Q  +Y   L  
Sbjct: 1154 AMADHAYHLQALLYTVALHR 1173


>gi|321314915|ref|YP_004207202.1| putative ATP-dependent DNA helicase [Bacillus subtilis BSn5]
 gi|320021189|gb|ADV96175.1| putative ATP-dependent DNA helicase [Bacillus subtilis BSn5]
          Length = 759

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 97/619 (15%), Positives = 187/619 (30%), Gaps = 118/619 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +K +  + I++K   + + L++                  +       L      HYE  
Sbjct: 252 KKALYEEGIDEKEFPVDQALQQIGFWKNTYVPNERIPLKDEWEKQVYRL----YEHYERQ 307

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           KK++   DF+D+     +L         +  +      +ILIDE QD + +Q+++++ L 
Sbjct: 308 KKEHSQFDFDDMASACYELF---IERPDLLEQYQSRFTYILIDEFQDINPVQYKIMQMLA 364

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                     S  + L  VGD+ QSIY+F G+ P  +L  ++               I L
Sbjct: 365 ----------SPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYP--------GAKTIYL 406

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  I++  D V    +N    + +        ++R      V  +         
Sbjct: 407 TANYRSTHPIVSSADIVVKKNKNRYAKTLE--------AARDDIQVPVLFYPYD------ 452

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                    A  +   I   I                +D  VL 
Sbjct: 453 ---------------------EEEEATMVVSDIKEKIQNG----------ASPEDFAVLY 481

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           R       I        +   I    +           ++ ++A      +++D  +   
Sbjct: 482 RTNSGGRAIYERL----HQSSIPYTADRGVQSFYSRRIVRQILAYLYASQNEDDTEAIKH 537

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +L  P     +  +  +       +                    IK I       +   
Sbjct: 538 LL--PALFLKQSALNTLKALSITEDCTMIKALAKLPDLKPFQLDKIKKIVPFFASLRTMK 595

Query: 500 PHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           P +  T   G     +    R        +  D L +      +       ++ + ++ +
Sbjct: 596 PVEAITFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKF-----KTIPDFLAHV 650

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +      K     +   V++MT+H +KGLE   V+++ T      H              
Sbjct: 651 DHMRAAEKNRTDEHG--VQLMTIHRSKGLEFKTVYVLGTVDGSIPHDFSL---------- 698

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                              +  +   ++  EE  RLLYV MTRA   L +   +N   + 
Sbjct: 699 -------------------ETARKGDEAALEEERRLLYVAMTRAKQHLYLSCPANRRGKT 739

Query: 675 KSNQRTWYDMVYDSFHNDE 693
            +  R  Y +V  +     
Sbjct: 740 ANRSRFLYPLVQKARQPLH 758


>gi|83954762|ref|ZP_00963473.1| Exodeoxyribonuclease V, beta subunit [Sulfitobacter sp. NAS-14.1]
 gi|83841046|gb|EAP80217.1| Exodeoxyribonuclease V, beta subunit [Sulfitobacter sp. NAS-14.1]
          Length = 1068

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 135/973 (13%), Positives = 281/973 (28%), Gaps = 131/973 (13%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMET------GNPTILKKAQTLQQASQTQC 61
                  + IY  +   P      + K V+  +           T     +TL+       
Sbjct: 181  PALTRLDEIYGKVIADPTAARDALAKAVATMLTAFPVGGMDGVTAKGPRETLENNLALFR 240

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN--TYKM 119
              ER   +     +   + + ++ T     K+P+  + L  +  +  ++           
Sbjct: 241  RVERDPAMLDRDWSLWQSLR-SLFTSNSRTKTPEGYDDLALAIMQAAEVLPSHPGPLADA 299

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                   +  A+ +   YE  KK   ++D+ D+I     LL+       +R  +  EI+ 
Sbjct: 300  KLHFQCLIACAQEVMEAYETRKKALGLIDYADMIAGAERLLRTDPA---VRQAVLDEIDC 356

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QDT+ +Q+ ++  L           +       VGD KQSI  F GA+P+    
Sbjct: 357  VIIDEFQDTNPVQFALLWQL----------GARAPRTLLVGDVKQSIMGFQGADPRLSQA 406

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                       A    +   L  ++RST  ++  V+ +        G             
Sbjct: 407  L---------AAANPDAKQPLDRNWRSTPAVMDFVNAM--------GAGLFGAGYNPLAP 449

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            +R    G       +V     +   +                   +A RIA  I  +  T
Sbjct: 450  TRDPVSGPALEVLNIVKGRGVRKYSKP---------------QEHVAERIA-QILQVGET 493

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             T   +   R ++  DI +LV +           R       + V   +         ++
Sbjct: 494  ITDRHSKAPRNVRPSDIALLVCRHATAARYAEELRA----RGVPVRIAE-DGWATSPVVQ 548

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
               A   +  + +D       L           +      + +     +           
Sbjct: 549  AARAALSYAANPDD---TNAALVLRTLGPDPLSLQAAMQAQIQGRLEDDP---------- 595

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLR 538
                V+  +  L          D   L++ A   R     +    +    L         
Sbjct: 596  ----VLLRLAALSDRLARLPISDAVDLVINASGLRIWADRQPDPAQARADLLRLEAEAND 651

Query: 539  NEQNSYS----------SLQELISELEQYPPTIKRAHSANH-----NEVRIMTVHTAKGL 583
             E               S +  +  L+            +        V I+T H +KG 
Sbjct: 652  FESAHRDLKAAAGFHGESAKVFLGWLDARASERDSDRRPDPAANSAEAVEIVTWHASKGR 711

Query: 584  ESPVVFLVDTGSQV--FSHKHIKKMHIMPSLNDDPGIP----IWIPQSKSRNNIVSDLIK 637
            E P+  + +    +  +      +   +  ++D   +     +      +        I+
Sbjct: 712  EWPITVVAEFDHGIEDWPGSTATRFTALHEIDDMDAVLASAALIHTPGLAAPEAERRFIE 771

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +   +     LLYV MTRA D+L++         ++++ +      V+      +   
Sbjct: 772  DRRSDFEANAKNLLYVAMTRARDRLVLEWPGFLKERDEEAPEAKCLFHVFTDACTPQIGG 831

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                   I     I                     +L  +  +P    +P +   ++   
Sbjct: 832  DTLRIGGIECPAIIRQLPEHAGFTAYSEAEITDTPRLGRDTPLPAVDLTPWRLQPSQATT 891

Query: 757  LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
               +      K       + +    RG  IH  L                +  T+     
Sbjct: 892  ALSAPESQGIKLGTPWSRTVSDAA-RGTAIHLAL---------------RTCLTRPDLTE 935

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSC------DSYSEVSVSGKINCPKKDIIISGRIDQ 870
               +   L  +   L+                 D   E+ + G+    K+   I G ID 
Sbjct: 936  SLPKATGLDDTTLALVAERAAALKAWLAADGYTDLLCEIPLLGR---TKEGAEIPGMIDL 992

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSE 929
            +++  +   + ++KT              +  QLS Y  ++++ +P   L    +++V  
Sbjct: 993  LAVGPRGCLLIDHKTGGAGEG-----FGLYWPQLSAYADLVRNVFPTYELNGVAVLWVDH 1047

Query: 930  PKVFIIPQNKLNK 942
             ++  +    +  
Sbjct: 1048 GRLDFLDLASIPA 1060


>gi|169797388|ref|YP_001715181.1| exonuclease V, beta chain [Acinetobacter baumannii AYE]
 gi|213155797|ref|YP_002317842.1| exonuclease V beta chain [Acinetobacter baumannii AB0057]
 gi|215484828|ref|YP_002327063.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter baumannii AB307-0294]
 gi|294837425|ref|ZP_06782108.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter sp. 6013113]
 gi|294858014|ref|ZP_06795783.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter sp. 6013150]
 gi|301345350|ref|ZP_07226091.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter baumannii AB056]
 gi|301512605|ref|ZP_07237842.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter baumannii AB058]
 gi|301594570|ref|ZP_07239578.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter baumannii AB059]
 gi|169150315|emb|CAM88212.1| exonuclease V, beta chain [Acinetobacter baumannii AYE]
 gi|213054957|gb|ACJ39859.1| exonuclease V beta chain [Acinetobacter baumannii AB0057]
 gi|213986544|gb|ACJ56843.1| Exodeoxyribonuclease V beta chain(ExodeoxyribonucleaseV 135 kDa
            polypeptide) [Acinetobacter baumannii AB307-0294]
          Length = 1232

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 124/951 (13%), Positives = 268/951 (28%), Gaps = 144/951 (15%)

Query: 49   KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD------LKEKLKK 102
              Q L+Q+      +   ++                + ++   +  D        +++++
Sbjct: 280  LLQVLKQSDSILVFDRSLAVQRELVFKFLGQLADQKVFKKCPAEISDGFYQHPCIQQIQQ 339

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                     ++F+   ++        L   +     +  +      F   I   ++ LK 
Sbjct: 340  LFGVLKNYAEQFDLLHIYLKAY----LCVEVKKRLPQVLQNKGETTFSQQIRTLSEALKG 395

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
             +        +      IL+DE QDT+  Q +++ S+                +  VGD 
Sbjct: 396  -EQGQRFAVFVQARYPLILVDEFQDTNQDQDDMLASIWR-----HPERYQKGCMIMVGDR 449

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQ+IY F G +    L   +  Q +           +L  + RS AD++ VVD +F    
Sbjct: 450  KQAIYGFRGGDMLTFLNAYKDIQAKH------GREYKLIHNHRSVADLVEVVDALFQRQI 503

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
            +           +++   R G           V    +Q NP    W +  D   +    
Sbjct: 504  DFGE-------QVQYDPIRAGT------RPHPVLIDQNQPNPHPLRWLTLKDKETE---- 546

Query: 343  SILARRIAYTISNMIGTDTI-----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
               A+++A+ I +++            + + + +   DI VL R            +F  
Sbjct: 547  ---AQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGL----DKVQFEL 599

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                I V    +  + D    +D+ AL   IL   D+      L S LF      + ++ 
Sbjct: 600  ERLGIRVNRPSKRSVFDCTIAQDVGALLTAILHPYDEAKVKRALISRLFAMDLKQLLQLE 659

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                                       +     +  +         +   L      +  
Sbjct: 660  Q------------------TAEGLSQFMTGFDAIRELWSAQGFLVAWQQCLNQFGIWKNL 701

Query: 518  ISRFGNEVID---VLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHS---ANH 569
            ++    +       L        ++ +      +L     +  Q P   +       ++ 
Sbjct: 702  VAVQSKDNERVVVNLRHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSE 761

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              V++MT+H +KGLE  +VFL+        +              +    +        +
Sbjct: 762  AGVQLMTIHQSKGLEFKIVFLLGADKPFRENNKTLNFSTQDITVSESAQTLTQRVVAIAD 821

Query: 630  NIV--SDLIKHLKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMV 685
                    +K  ++    E NRL YV +TRAS ++   +      S    +  +   +  
Sbjct: 822  KTYLNETELKQHEERALAEQNRLWYVALTRASHRVYALLQDTDGKSVSGLAFWKNRAEPF 881

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                  DE + +               E    H  +               Q +  K+ +
Sbjct: 882  QHRCCTDEIILEQPPAARHLNQHINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGT 941

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLS-------DNQTFNRGLIIHKLLQVIFTLPE 798
             +    +   +L    +D        +            +    G  +H++ + I     
Sbjct: 942  DLLASQSHEAVLAEDELDQVISVEAPAAQPINWIKSNFPRGTLAGNFLHEIFEHIDFQCS 1001

Query: 799  HKRKNFITSYCTKNAKLWP-------------AKEYK-----NLLLSITRLLENP----- 835
             +  + I      +                   +E +      +   +  +L  P     
Sbjct: 1002 DEWVSEIRRRFKNDYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQGF 1061

Query: 836  MMTTAMSCDSYSEVSVSGKINCPK------------------------KDIIISGRIDQI 871
             +         SE      ++                               ++G ID +
Sbjct: 1062 RLNQLQPEHYLSECPFYLALSDRVLAMKRIQQLFAEYGMEMPELLEARSARYLNGSIDLV 1121

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
                Q   I +YK+++      ++            ++  Q  +Y   L  
Sbjct: 1122 YFDGQRYHIADYKSNYLGENLADYSVESIAQSMSLASYWLQAGLYLVALHR 1172


>gi|107022291|ref|YP_620618.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia AU
            1054]
 gi|105892480|gb|ABF75645.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia AU
            1054]
          Length = 2007

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 125/985 (12%), Positives = 262/985 (26%), Gaps = 129/985 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             +W      +  + +     +   +      A  L   +      +  + L    L    
Sbjct: 239  RMWAAERDAIDALLRAAQPVLNQRSHKPDAVADALAAWAVHFEQGDATAALPKAALKLTQ 298

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T       +     +    +     +              +             L     
Sbjct: 299  TALTKATKKGGATPAHAFFDVADALEAAVAAAEAAQRARWLALIAEWLDMAPGELAER-- 356

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 357  --KRTRRVVSFDDLLANLYHALHAHP---WLAETLRARYPAALIDEFQDTDPLQFAIFDR 411

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 412  IFA----------PRGPLFLVGDPKQAIYSFRAADLHTYLAARAR----------ASACY 451

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   ++ F     A  L       +R  +          +    V + 
Sbjct: 452  TLAVNQRSTPAIVDACNRFFLSNPRAFVLDGLDYYAVRAGTR---------VRAPFVDET 502

Query: 319  DSQCNPQQESWTSYFDS--LPQESSASILARRIAYTISNMIGTDTIFSNGKKR-VIQAKD 375
            D         W        L +  + +  A+  A  I+ ++              +   D
Sbjct: 503  DPGPAGDFRVWALPGGEGTLLKRDAQAQAAQACAAEIARLMRGAREGRVRLGESPLSPGD 562

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I VLV+  +   L+  +       + I  V   +  +      + L  +   I +  D  
Sbjct: 563  IAVLVQTHRQGSLVKRVLAT----WGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLR 618

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                 L S  F      ++++     + +         +   +S  +   +Y        
Sbjct: 619  RLRAALASDWFGLDAGALWRMEQ--GDGDAPPGASAADSADAMSWVERFSRYRLLWRERG 676

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-EL 554
                   F   +  A++             I+ L E        +     +L+ L +  L
Sbjct: 677  FAVMWRTFTRELRIAERLMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRL 736

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +      +    ++ N V+I+TVH +KGLE  VVF                +      +D
Sbjct: 737  DGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPSSALPDAREYHD 796

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSN 672
            D G  +        +   +   +   +    E  RL+YV +TRA  +  +    + ++ +
Sbjct: 797  DAGDAVLHYGC--DDEAAAHAARQALREQAAERARLVYVALTRAVYRCYVVAGPYLSSRS 854

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +++ +     +V  + H  +         +  +  W A           P+        
Sbjct: 855  TREARRSVLNWLVAGAGHAFDAWLDEPPDEAALEAAWRALAGGPVSVAPLPVPARRERLA 914

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------------------------- 764
               +           +   +   + + S++                              
Sbjct: 915  AGHDASQTLAARHATRVLRDAWRLASFSSLTASMAREEAGVAAVPDDELRPDHDALAAVT 974

Query: 765  -----------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                             + +L   +    G  +H+L ++                     
Sbjct: 975  PDGELIFADTVATDPPDDDILVFPRGAAAGECLHRLFELSRFTEPESWHAAALGALHDRP 1034

Query: 814  KLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSV------------- 851
                      L   + RL+++           +          E+               
Sbjct: 1035 VEAEPALAARLPAMMVRLVDDVVHTELVPGMRLVDLDPAKRLDEMGFLFPAPSLDLLALR 1094

Query: 852  ---------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH---------HVPQEI 893
                        +        I G ID I       +I ++K++H             ++
Sbjct: 1095 RLLVAHGYPDVALEAGTLAGFIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGPRALDV 1154

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNK 918
                + +  Q  +Y   L      +
Sbjct: 1155 AMADHAYHLQALLYTVALHRYLRGR 1179


>gi|260556280|ref|ZP_05828499.1| exodeoxyribonuclease V, beta subunit [Acinetobacter baumannii ATCC
            19606]
 gi|260410335|gb|EEX03634.1| exodeoxyribonuclease V, beta subunit [Acinetobacter baumannii ATCC
            19606]
          Length = 1232

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 124/951 (13%), Positives = 267/951 (28%), Gaps = 144/951 (15%)

Query: 49   KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD------LKEKLKK 102
              Q L+Q+      +   ++                + ++   +  D        +++++
Sbjct: 280  LLQVLKQSDSILVFDGSLAIQRELVFKFLGQLADQKVFKKCPAEISDGFYQHPCIQQIQQ 339

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                     ++F+   ++        L   +     +  +      F   I   ++ LK 
Sbjct: 340  LFGVLKNYAEQFDQLHIYLKAY----LCVEVKKRLPQVLQNKGETTFSQQIRTLSEALKG 395

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
             +        +      IL+DE QDT+  Q +++ S+                +  VGD 
Sbjct: 396  -EQGQRFAVFVQARYPLILVDEFQDTNQDQDDMLASIWR-----HPERYQKGCMIMVGDR 449

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQ+IY F G +    L   +  Q +           +L  + RS AD++ VVD +F    
Sbjct: 450  KQAIYGFRGGDMLTFLNAYKDIQAKH------GREYKLIHNHRSVADLVEVVDALFQRQI 503

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
            +           +++   R G           V    +Q NP    W    D   +    
Sbjct: 504  DFGE-------QVQYDPIRAGT------RPHPVLIDQNQPNPHPLRWLMLKDKETE---- 546

Query: 343  SILARRIAYTISNMIGTDTI-----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
               A+++A+ I +++            + + + +   DI VL R            +F  
Sbjct: 547  ---AQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGL----DKVQFEL 599

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                I V    +  + D    +D+ AL   IL   D+      L S LF      + ++ 
Sbjct: 600  ERLGIRVNRPSKRSVFDCTIAQDVGALLTAILHPYDEAKVKRALISRLFAMDLKQLLQLE 659

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                                       +     +  +         +   L      +  
Sbjct: 660  Q------------------TAEGLSQFMTGFDTIRELWSAQGFLVAWQQCLNQFGIWKNL 701

Query: 518  ISRFGNEVID---VLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHS---ANH 569
            ++    +       L        ++ +      +L     +  Q P   +       ++ 
Sbjct: 702  VAVQSKDNERVVVNLRHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSE 761

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              V++MT+H +KGLE  +VFL+        +              +    +        +
Sbjct: 762  AGVQLMTIHQSKGLEFKIVFLLGADKPFRENNKTLNFSTQDITVSESAQTLTQRVVAIAD 821

Query: 630  NIV--SDLIKHLKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMV 685
                    +K  ++    E NRL YV +TRAS ++   +      S    +  +   +  
Sbjct: 822  KTYLNETELKQHEERALAEQNRLWYVALTRASHRVYALLQDTDGKSVSGLAFWKNRAEPF 881

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                  DE + +               E    H  +               Q +  K+ +
Sbjct: 882  QHRCCTDEIILEQPPAARHLNQHINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGT 941

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLS-------DNQTFNRGLIIHKLLQVIFTLPE 798
             +    +   +L    +D        +            +    G  +H++ + I     
Sbjct: 942  DLLASQSHEAVLAEDELDQVISVEAPAAQPISWIKSNFPRGTLAGNFLHEIFEHIDFQCS 1001

Query: 799  HKRKNFITSYCTKNAKLWP-------------AKEYK-----NLLLSITRLLENP----- 835
             +  + I      +                   +E +      +   +  +L  P     
Sbjct: 1002 DEWVSEIRRRFKNDYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQGF 1061

Query: 836  MMTTAMSCDSYSEVSVSGKINCPK------------------------KDIIISGRIDQI 871
             +         SE      ++                               ++G ID +
Sbjct: 1062 RLNQLQPEHYLSECPFYLALSDRVLAMKRIQQLFAEYGMEMPELLEARSARYLNGSIDLV 1121

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
                Q   I +YK+++      ++            ++  Q  +Y   L  
Sbjct: 1122 YFDGQRYHIADYKSNYLGENLADYSVESIAQSMSLASYWLQAGLYLVALHR 1172


>gi|228471345|ref|ZP_04056146.1| ATP-dependent DNA helicase PcrA [Porphyromonas uenonis 60-3]
 gi|228306846|gb|EEK15959.1| ATP-dependent DNA helicase PcrA [Porphyromonas uenonis 60-3]
          Length = 778

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 120/703 (17%), Positives = 211/703 (30%), Gaps = 148/703 (21%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K+     + K+  D K  L   Q            Y           L     + Y +  
Sbjct: 132 KSYTPTRVLKRISDAKNMLISPQA--YAANQEIRKYDTMNQEGELYKL----YSLYTQRC 185

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K++  +DF+DL+   N L++    +     +I   I+ +LIDE QDT+  Q+E+ R L  
Sbjct: 186 KESNSMDFDDLLFLLNVLIRDFPEA---HQEIKSGIDFLLIDEYQDTNTSQFELARHLVA 242

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D             +FAVGD+ QSIYSF GA    +L  K+              + +L 
Sbjct: 243 D----------HNRIFAVGDDAQSIYSFRGARIANILSFKQAF--------AGAKLFKLE 284

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  I++  + +    +                              + V     +
Sbjct: 285 QNYRSTGHIVSSANALIEHNQQR--------------------------IPKEVYTDLGE 318

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
               Q    +  D           A R+   I+     +          I   D  +L R
Sbjct: 319 GEKLQLYHYTSSDE---------EATRLIDIITQRHDEEQ---------IPLSDQTILYR 360

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +     +         I  V            IKD +A  + I++  ++L+    +
Sbjct: 361 TNAQSRKFEEVL----LSEGIPYVIYGGMAFYARAEIKDAIAYLQLIINPHNELALRRAI 416

Query: 442 KSPLFNFSEDDIFKICTQRHET---ETVYEYIQK---------FANCGISKFQHVIKYIH 489
             P     +  I K+     +     ++Y+ +            +    +K    +  I 
Sbjct: 417 AYPRKGIGDKTIEKVALYAQQHSPQLSLYDALCAAIDSADPVGLSRGVRNKIASFVNLID 476

Query: 490 ELI-HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS 545
            L      +    ++   IL       +       E     D L EF++     E     
Sbjct: 477 SLASAYQHYAKLEEWIAHILRESGIVAELTREDTVESQAKLDNLKEFISSASEFEARYRQ 536

Query: 546 SLQELISE-------LEQYPPTIKRAHSANHNEV------------RIMTVHTAKGLESP 586
               L +E       L  +   I    + + + V            ++MT+H AKGLE P
Sbjct: 537 DPLNLFAEEPLGTELLSAFAQQIPLLTNQDQDNVEQQSGVALQDRLQLMTIHVAKGLEFP 596

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V++      +                                               EE
Sbjct: 597 YVYIAGVEENLLPSSRSLDT----------------------------------AEMIEE 622

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKS----NQRTWYDMVYDSFHNDERVKKIKLTN 702
             RLLYVG+TRA     +   S  +   K+      R   ++    +   E    I  + 
Sbjct: 623 ERRLLYVGITRAQKLCTLSYTSIRTRNGKTELMIPSRFIAELPRAHYTLHEEAAPIGTSV 682

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
               + +     S      +P     T +Q++ +      L S
Sbjct: 683 RSYANSYQPTTNSQRPTATSPSASSATAQQMLAKSSPVNALES 725


>gi|148826022|ref|YP_001290775.1| hypothetical protein CGSHiEE_05005 [Haemophilus influenzae PittEE]
 gi|148716182|gb|ABQ98392.1| hypothetical protein CGSHiEE_05005 [Haemophilus influenzae PittEE]
          Length = 1211

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 153/982 (15%), Positives = 300/982 (30%), Gaps = 148/982 (15%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248  ESADEISAIITNELVKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
             +FL           T +   K P                 ++     M    L+ LTL 
Sbjct: 308  DYFLQSSIEKNCEESTDKNKDKKPA-----TPFYSPIFAELEKRVNALMTPDLLSKLTLY 362

Query: 131  KYLNAHYEEAKKKNCVLD---------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                 HY +  ++  +LD         F+DL+    + L+       +   I  +    +
Sbjct: 363  -----HYRQGLQQK-LLDYKLNHQEKSFDDLLRLLCEALQG-AQGDELAEMIRFQYPFAM 415

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   Q+ +   +  D                +GD KQ+IY F GA+    L+  
Sbjct: 416  IDEFQDTDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKAS 469

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               Q R            L  ++RS   ++  V+ +F  P++         T +  R   
Sbjct: 470  DEAQSRFE----------LTKNYRSEKHLVDGVNALFDFPQSPFIYQNIKFTAVDSR--- 516

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                      + +    + +  P    + +  D + +   A I A  I + + +      
Sbjct: 517  ---------DDHLRFYLNGKAEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAAENQA 567

Query: 362  IFSNGKKRV-IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +F N   R  +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+
Sbjct: 568  VFQNEDTRKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKE 624

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L  + +  L+   +   +  + + LF  +  DI +I           E   +      ++
Sbjct: 625  LAWVLKACLNVA-ERPILNAIATALFGLNAADIHQIQQN--------EADWQRWADSFAQ 675

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +Q   +    L  + Q          +L    G +             L E L       
Sbjct: 676  YQQTWQRQGILAMLHQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATLH 729

Query: 541  QNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            ++  + L     +++ +     +    +    V+I+++H +KGLE  +V+L         
Sbjct: 730  ESEAALLSWFEKQIQGEGRQEAQIRLESERQLVKIVSIHKSKGLEYDLVWLPFLA-APSK 788

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                K ++I  S   D  +     ++          +  L + T  E  RLLYV +TRA 
Sbjct: 789  DPSKKDINIYYSKERDETLWDIENRN----------LNALCEETFAEELRLLYVALTRAK 838

Query: 660  DQL-----------------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             Q+                 ++ +         S  +    ++       +   KI    
Sbjct: 839  YQMAFALPTQFDKKWNALHYVLSQGEIGKEIALSVPKDTETLLQTFKEKMQDNVKICTKP 898

Query: 703  SINK----------DEWIAYEWS---THHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
            ++            D++ A E++         T     E   +  +           + +
Sbjct: 899  NLEAFPALSINTKNDDFKAAEFTGNIEQDWRITSFTSIEQAHRRQNYFTESAGKKHAVFD 958

Query: 750  DINEPYILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            D  +    N   I T      ES  L   +    G  +H+  +  +       +      
Sbjct: 959  DAKDYDSQNSIEISTALLNESESSILDLPRGKQVGTALHRHFENCYFSDLANTEEIDKLR 1018

Query: 809  CTKNAKLWPAKEYKNLLLSITRL-LENP---MMTTAMSCDSYSEVSV------------- 851
             +        +  +N L  I+   L N     +    + D   E+               
Sbjct: 1019 QSLQLDETFTEPLQNWLQQISHTPLSNEIGIALADLANKDCIKEMPFYLAIRAHFDVEAF 1078

Query: 852  -----------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ--------- 891
                       S  +   +   ++ G ID +       ++ +YK++              
Sbjct: 1079 NRALKAHHHLPSEPLQFEQIQGMVRGSIDLVFRHNGKYYLVDYKSNFLGSTLASYNQEAL 1138

Query: 892  EIEHIPYTHIAQLSIYEKILKD 913
            + E +   +  Q  IY   L  
Sbjct: 1139 KKEMLHSHYDWQYLIYTLALHR 1160


>gi|322435329|ref|YP_004217541.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
 gi|321163056|gb|ADW68761.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
          Length = 1165

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 139/895 (15%), Positives = 270/895 (30%), Gaps = 113/895 (12%)

Query: 86   TQEINKKSPDLKEK--LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
             +++ +    + +   L K       +         +  T A   +        +     
Sbjct: 336  KKQLAQLIEQVADDPDLCKLLCSVNALPPIHYPADQWPITKALFRVLSRALVELQLVFAA 395

Query: 144  NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
                DF +L +     L+     + +     Q + H+L+DE+QDTS  Q+E+I+ LT+ +
Sbjct: 396  RTQCDFAELGLLARAALRNTSAVSDLAQATGQNLQHLLVDEMQDTSTSQYELIQLLTQHW 455

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                    S +T+F VGD KQSIY F  A  +   R       R T       ++ L  +
Sbjct: 456  ------DGSSQTVFLVGDPKQSIYLFRQARVE---RFVNTMHSR-TLGDVPLGVLNLTAN 505

Query: 264  FRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            FRS + ++   ++ F +        +    +       R       + W      +    
Sbjct: 506  FRSQSTLVENFNQDFGLLFPTLASGNPSEVSYTPAIPRRPATQHAAREWHPTPIPYTDDT 565

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
            N +    T        E      A       + +                     VLVR 
Sbjct: 566  NTRTTQTTRQRRQTATEIRDLAAAWLARDHTARL--------------------AVLVRN 605

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
            R     +  +    K    +         L +   I DL+ L R +L   D  +++ +L+
Sbjct: 606  RSH---LIEVVAAFKQSPAVPFRAIQIEPLRERQEILDLLTLTRALLHPADRTAWLALLR 662

Query: 443  SPLFNFSEDDIFKICTQRHETET-------VYEYIQKFANCGISKFQHVIKYIHELIHIA 495
            +P    +  D+  +      T         +       ++ GI++ + V + +   +   
Sbjct: 663  TPWCGLTLTDLHLLTGADDPTLARTSIIHLIATRGDLLSDDGIARLEPVWQILSAALAQR 722

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                   +      +        +    E +  +D++L    + E          ++ L+
Sbjct: 723  GRLPISQWIERTWRSFNA----PAFSTQEELANIDQYLTLLDQLES---PGNTLDLTLLD 775

Query: 556  QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM----PS 611
            Q    +  A + +   V +MT+H AKGLE   VF+        +++      +     P 
Sbjct: 776  QRLSKLYAAPAVHPGAVDLMTMHGAKGLEWDAVFVPALERTGANNRSRLLSWLEVDGTPD 835

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDL----IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            L+DD      +   +S+      L              E  RL YV  TRA ++L +   
Sbjct: 836  LDDDTIAHGILAPIQSKGTASQQLNTWMRSIESAREAAERKRLFYVACTRAREELHLFAS 895

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                 +   +                         S+    W A E   H P    +   
Sbjct: 896  PVAKQDGTLSIP---------------------PASLLASAWPAAEDHFHPPAAQLIVMP 934

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
               + L             I      P  L P+   T+ +T  +       +   G  +H
Sbjct: 935  TQPQILDSLAA--AAAPRTILRIPLSPIELIPTPEPTQPQTLFDRPEGSFASRAFGNTVH 992

Query: 788  KLLQVIF------------TLPEHKRKNFITSYCTKNAKLWPAKEY--KNLLLSITRLLE 833
              L  +             T    +    I      +       +     +L ++   L 
Sbjct: 993  AFLDQLAARIAAGDTPAQLTTELPQWSPRIAQLLRASGLPPTTIDRFAPRVLTALYNTLT 1052

Query: 834  NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ--------NIFIFEYKT 885
            +P     ++       + +        +   S R+D+  ++          + +I +YKT
Sbjct: 1053 DPDGQWLLAAH---PNATTESALVSWDETRTSIRMDRTFLAGDSPQTTASTHQWIIDYKT 1109

Query: 886  ----HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
                       +      +  QL  Y         +  +   L Y   PK+   P
Sbjct: 1110 ADLGGRTESTFLAEEKQNYAPQLEAYA---ATFPADTPIRLALYYPMLPKLIWWP 1161


>gi|19115253|ref|NP_594341.1| ATP-dependent DNA helicase, UvrD subfamily [Schizosaccharomyces
           pombe 972h-]
 gi|1723281|sp|Q10213|SRS2_SCHPO RecName: Full=ATP-dependent DNA helicase srs2
 gi|1184018|emb|CAA93344.1| ATP-dependent DNA helicase, UvrD subfamily [Schizosaccharomyces
           pombe]
          Length = 887

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 111/566 (19%), Positives = 186/566 (32%), Gaps = 135/566 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+ +  KN + DF+DL++N   LL+K+           + I HILIDE QDTS I
Sbjct: 194 ELYRLYQTSLWKNNLADFDDLLLNFILLLQKQPDCV-------RNIKHILIDEFQDTSKI 246

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ +++ L                +  VGD  QSIY F  AE + + +     +      
Sbjct: 247 QYFLVKLLALQ----------NSDITIVGDPDQSIYGFRSAEIRNLNQMSEDFE------ 290

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RS   IL +   + S  ++       S      +             
Sbjct: 291 --GTQVLHLERNYRSAKPILELALSIISQDKSRPKKGLKSNHISSLKPH----------- 337

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                F++  +ES        IA  I  ++G+          +I
Sbjct: 338 ------------------YRLFETNNKESY------WIAREIKRIVGS-------CPELI 366

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              DI +LVR    T  +      L     +           D   I+DL+A  R + + 
Sbjct: 367 FYNDIAILVRSSSLTRSLEHALSEL----GVPYRMVGVNKFFDREEIRDLIAYLRVLAN- 421

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYE-----------YIQKFANCGIS 479
           +D  S + ++  P  N  +  I + I        T ++             Q+     + 
Sbjct: 422 KDSTSLIRVINVPPRNIGKTKIDRIIFESERRGLTFWQTLNEVKNENILLSQRNDKSFLK 481

Query: 480 KFQHVIKYIHELIHIA----QFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEF 532
             +  +  I +L +         +  D    IL   K  +  + +      E  + + E 
Sbjct: 482 SLKSFLCSISKLENRYLSNGHSATLSDLLLGILSEIKYYEYLVRKNKETVEEKWENVMEL 541

Query: 533 LNFTLR-----NEQNS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +  +        E +   S++  L + L Q     +        +V I T+H AKGLE P
Sbjct: 542 VQQSDNISCIFYELDYKISTIVLLQNFLTQIALVNEEQKEGESQKVTISTLHAAKGLEWP 601

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VVFL      +  H                                            +E
Sbjct: 602 VVFLPCLCENIIPHSRS--------------------------------------DDLDE 623

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSN 672
             RLLYVG TRA   L +    + + 
Sbjct: 624 ERRLLYVGATRAQALLYLSSFKSVTG 649


>gi|71892050|ref|YP_277780.1| exonuclease V [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796156|gb|AAZ40907.1| exonuclease V [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 1187

 Score =  231 bits (588), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 138/897 (15%), Positives = 276/897 (30%), Gaps = 141/897 (15%)

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL--NAHYEEAKKKNCVLDFEDLIIN 155
            + +    D   K+  + +++K     +A   +   L    HY      N ++D     + 
Sbjct: 304  DYICTLFDSVEKLYSQLSSFKTSIFKIAINEIHNDLNNTQHYRSEITLNDLVD-----VL 358

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
             + L+K +D    + + +       LIDE QDT   Q+++  +L            S   
Sbjct: 359  AHHLVKDKD--NKLAHILRTRYPVTLIDEFQDTDCQQFKIFSTLY--------NSDSENG 408

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            L  +GD KQSIY+F GA+    ++ +R             +   L +++RS+ +I+  V+
Sbjct: 409  LILIGDPKQSIYAFRGADIFSYMKIRR----------TVCNKYNLNINWRSSLNIVNAVN 458

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            ++F +  N     +         S                   ++Q       W    + 
Sbjct: 459  QLFQLVSNPFIFEDIPFIPSVTASRNS----------MYRFLINNQSQTAMCFWLHPDEI 508

Query: 336  LPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
            +        +A+  A  + N++     GT  + ++  KR ++  DI VLVR  ++  LI 
Sbjct: 509  VTIGDYKRSMAQECATILYNLLHEIRNGTAWLENDKYKRKLEISDITVLVRNHEEASLIC 568

Query: 391  FLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                   +   IS V  ++   + + +   +L  L R IL  E   +    L +  F  +
Sbjct: 569  SAL----SKVNISTVFLSNHKNIFETMESYELSLLLRAILFPE-SHTICTALTTVFFGLN 623

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
              DI  I     + E ++E   ++ +    K           + I +    H     +L 
Sbjct: 624  ATDIESINNNESKQERIFEKFFEYYSVWKKK--------GVYLMIQKVIFDHKVPEKLLS 675

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ----YPPTIKRAH 565
             + G    I+         L E L    R  Q+ ++ ++ LI ++ Q             
Sbjct: 676  TRVGESSLINIL------HLGELLQDAARQLQDEHALMEWLILKITQPKNKKTSDQNLRL 729

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             ++H  ++I T+H +KGLE P++FL       +                         ++
Sbjct: 730  GSDHQLIKISTIHKSKGLEFPLIFLPFIADFNYVKNPFFHDR-------------KSYKT 776

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII---CKHSNTSNEKKSNQRTWY 682
                N     +    +    E  RLLYV +TR+     I           +  +N    +
Sbjct: 777  HLNFNTSKSHLTLADEERLSEDLRLLYVAVTRSIYHCSIGIGPIVRRYKKKSNTNNDLHH 836

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEW---IAYEWSTHHPENTPLEREETIKQLM----- 734
              +              L   + K          +              ++         
Sbjct: 837  SALGYLIQKKTSGNAATLKKHLKKLSVYSNGDISFRIISKSQELFSHASSVASNQLLCGK 896

Query: 735  ---DEQKIPKKLFSPIKN----------DINEPYILNPSTIDTKGKTNLE-SLLSDNQTF 780
                   +     +               +N    L+ S      +  +  +  +  +  
Sbjct: 897  KWKTSPNVIPWSITSFSALQHTDVGVTTYLNLEKQLDISEHIQSQENEIPLTPHTFPKGK 956

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL--ENPMMT 838
              G   H + QV+        K         N         +  +  +       N  + 
Sbjct: 957  VCGSFFHSIFQVLDFRKLVDMKWLYAHMERYNIDPIWGFVVREWIYIVLNTPLNNNLTLA 1016

Query: 839  TAMSCDSYSEVSV--------------------------SGKINCPKKDIIISGRIDQIS 872
              +  +  +E+                            S  +       ++ G ID I 
Sbjct: 1017 QIIPENKKTELKFYLSINTYLTSEELDHLCKKYDPVSRKSSSLTFLDITGMLKGFIDLIF 1076

Query: 873  ISQQNIFIFEYKTHHHVPQEI---------EHIPYTHIAQLSIYEKILKDSYPNKSL 920
                  ++ +YKT+                E I + +  Q  +Y   L     N+ +
Sbjct: 1077 RWNHRYYLLDYKTNWLGDNNKDYVGSKIRQEMIKHHYALQYQLYTLALHRFLRNRLV 1133


>gi|184156689|ref|YP_001845028.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Acinetobacter
            baumannii ACICU]
 gi|294842008|ref|ZP_06786691.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
            sp. 6014059]
 gi|183208283|gb|ACC55681.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
            baumannii ACICU]
 gi|322506576|gb|ADX02030.1| recB [Acinetobacter baumannii 1656-2]
 gi|323516455|gb|ADX90836.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
            baumannii TCDC-AB0715]
          Length = 1232

 Score =  231 bits (588), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 124/951 (13%), Positives = 268/951 (28%), Gaps = 144/951 (15%)

Query: 49   KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD------LKEKLKK 102
              Q L+Q+      +   ++                + ++   +  D        +++++
Sbjct: 280  LLQVLKQSDSILVFDGSLAIQRELVFKFLGQLADQKVFKKCPAEISDGFYQHPCIQQIQQ 339

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                     ++F+   ++        L   +     +  +      F   I   ++ LK 
Sbjct: 340  LFGVLKNYAEQFDQLHIYLKAY----LCIEVKKRLPQVLQNKGETTFSQQIRTLSEALKG 395

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
             +        +      IL+DE QDT+  Q +++ S+                +  VGD 
Sbjct: 396  -EQGQRFAVFVQARYPLILVDEFQDTNQDQDDMLASIWR-----HPERYQKGCMIMVGDR 449

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQ+IY F G +    L   +  Q +           +L  + RS AD++ VVD +F    
Sbjct: 450  KQAIYGFRGGDMLTFLNAYKDIQAKH------GREYKLIHNHRSVADLVEVVDALFQRQI 503

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
            +           +++   R G           V    +Q NP    W    D   +    
Sbjct: 504  DFGE-------QVQYDPIRAGT------RPHPVLIDQNQPNPHPLRWLMLKDKETE---- 546

Query: 343  SILARRIAYTISNMIGTDTI-----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
               A+++A+ I +++            + + + +   DI VL R            +F  
Sbjct: 547  ---AQQVAWKIRDLLNQSHAGQLYFQKDAQTQTLNEDDIAVLSRNHDGL----DKVQFEL 599

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                I V    +  + D    +D+ AL   IL   D+      L S LF      + ++ 
Sbjct: 600  ERLGIRVNRPSKRSVFDCTIAQDVGALLTAILHPYDEAKVKRALISRLFAMDLKQLLQLE 659

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                                       +     +  +         +   L      +  
Sbjct: 660  Q------------------TAEGLSQFMTGFDTIRELWSAQGFLVAWQQCLNQFGIWKNL 701

Query: 518  ISRFGNEVID---VLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHS---ANH 569
            ++    +       L        ++ +      +L     +  Q P   +       ++ 
Sbjct: 702  VAVQSKDNERVVVNLRHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSE 761

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              V++MT+H +KGLE  +VFL+        +              +    +        +
Sbjct: 762  AGVQLMTIHQSKGLEFKIVFLLGADKPFRENNKTLNFSTQDITVSESAQTLTQRVVAIAD 821

Query: 630  NIV--SDLIKHLKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMV 685
                  + +K  ++    E NRL YV +TRAS ++   +      S    +  +   +  
Sbjct: 822  KTYLNENELKQHEERALAEQNRLWYVALTRASHRVYALLQDTDGKSVSGLAFWKNRAEPF 881

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                  DE + +               E    H  +               Q +  K+ +
Sbjct: 882  QHRCCTDEIILEQPPAARHLNQHINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGT 941

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLS-------DNQTFNRGLIIHKLLQVIFTLPE 798
             +    +   +L    +D        +            +    G  +H++ + I     
Sbjct: 942  DLLASQSHEAVLAEDELDQVISVEAPAAQPISWIKSNFPRGTLAGNFLHEIFEHIDFQCS 1001

Query: 799  HKRKNFITSYCTKNAKLWP-------------AKEYK-----NLLLSITRLLENP----- 835
             +  + I      +                   +E +      +   +  +L  P     
Sbjct: 1002 DEWVSEIRRRFKNDYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQGF 1061

Query: 836  MMTTAMSCDSYSEVSVSGKINCPK------------------------KDIIISGRIDQI 871
             +         SE      ++                               ++G ID +
Sbjct: 1062 RLNRLQPEHYLSECPFYLALSDRVLAMKRIQQLFAEYGMEMPELLEARSARYLNGSIDLV 1121

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
                Q   I +YK+++      ++            ++  Q  +Y   L  
Sbjct: 1122 YFDGQRYHIADYKSNYLGENLADYSVESIAQSMSLASYWLQAGLYLVALHR 1172


>gi|88802036|ref|ZP_01117564.1| ATP-dependent helicase [Polaribacter irgensii 23-P]
 gi|88782694|gb|EAR13871.1| ATP-dependent helicase [Polaribacter irgensii 23-P]
          Length = 1052

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 134/888 (15%), Positives = 301/888 (33%), Gaps = 124/888 (13%)

Query: 52   TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK----KSQDEF 107
             L+     +  + +F       +           +    +   ++ ++L+    +S++ +
Sbjct: 262  KLRNLRFLKSEDLKFDGRLDATIKGCKNLFAAKASPATKQAIEEISDRLRQYYLESKEVY 321

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV---LDFEDLIINTNDLLKKRD 164
                  +   K+   ++  L +   +N      K+ N +    +F  LI +         
Sbjct: 322  NATFSDYLLNKITLKSIIPLAVLNNINTELNTIKEDNNIRLNAEFNQLISDNIK----DQ 377

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             + +I  +I Q   H  IDE+QDTS++QWE +  L E+    +        L  VGD KQ
Sbjct: 378  PAPFIYERIGQRFQHYFIDEMQDTSVLQWENLIPLIENALAQE-----NSNLLLVGDGKQ 432

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI--PE 282
            +IY + G + ++ +      +           + +L  ++RS ++I++  +  F      
Sbjct: 433  AIYRWRGGKAEQFIALGSKEENPFNVHK---EVKDLATNYRSYSEIISFNNSFFQHTVNF 489

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                  +        +   + + G V L        +   + ++  +             
Sbjct: 490  LQNESYKKLFYEGNKQLENLKKGGFVSLSFL---NKEDHKDAEKIKYP------------ 534

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                +++   I  +           ++     +I VL R +KD   +            I
Sbjct: 535  ----KKVLEKIKQL-----------EKDFYLNEICVLTRTKKDGIAVADYLSE----NGI 575

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            ++V ++  +L  +  I  ++ +     +  D+      L      F  + +     +   
Sbjct: 576  AIVSSETLLLKSNAKINFIINILHSFQNANDEERRFEFL-----YFLYEHLQVKIPKHAF 630

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             E   +         +  F  V  +        Q    ++    I+              
Sbjct: 631  FEKYVKSTNDLIFEDLKSFGVVFNF-----TAFQQVPFYEKIEEIIRGFN--------LV 677

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
                  +  FL+  L  ++ +   + + +   E+   ++    S N + V++MT+H +KG
Sbjct: 678  TSSNAYVQFFLDIVLEQQRKAT-DIGDFLEFWERKKDSLSIIASENLDAVQVMTIHKSKG 736

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMP-SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            LE PVV            K       +P   N    +  +       +    ++    ++
Sbjct: 737  LEFPVVIFPCDVEIHGQIKPKVWFDDLPKDYNFKELLIDYKKDLSLISARGIEIYNAQRE 796

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            + + +   LLYV +TRAS+QL I   +  S +   N   +                I L 
Sbjct: 797  ALELDNFNLLYVALTRASEQLHIITENKISAKGLENTNYY--------------SGIFLN 842

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                ++ W          E+  ++ +E   + +    + +K  S    + N   + + S 
Sbjct: 843  YLKEQNLWQEDCLEYRFGEDLRVQNKE---KQVSLTTVHEKFISTPWQEHNIVLLASSSK 899

Query: 762  IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
            +            +     + G + H++L  I  +      + +  Y  +   L    + 
Sbjct: 900  L---------WDTAQGDAIDFGNLFHEILSKI--ITVKDVSSVLNQYHQR--GLINDYQL 946

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFI 880
              +   I  ++ +P +T   + D    V  + +      + +I    D++  + +  + I
Sbjct: 947  VEIKSKIYAIVNHPKLTPYYAADV---VVFNEREIVDVDNQVI--IPDRLVFNRKNEVTI 1001

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP--NKSLVCLLIY 926
             +YKT +            H  QL  YE++LK  +   +K +   LIY
Sbjct: 1002 IDYKTGNPTND--------HKQQLLKYERVLKSMHFIIDKKI---LIY 1038


>gi|170731281|ref|YP_001776714.1| ATP-dependent DNA helicase [Xylella fastidiosa M12]
 gi|167966074|gb|ACA13084.1| ATP-dependent DNA helicase [Xylella fastidiosa M12]
          Length = 658

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 101/702 (14%), Positives = 213/702 (30%), Gaps = 129/702 (18%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
              + K +  S   G       A  L+               S F          +++  
Sbjct: 65  RERVAKQIKSSRADGLTICTFHALGLKFLQIEHDAVGLKPGFSVFDADDADAQINDLLHG 124

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
                  D K ++ ++++  +         +  +           L A Y+        +
Sbjct: 125 AKQDVIDDTKRRISRAKNAGLSPEQALAAARTTREME-----VATLYARYQARLIAFNAV 179

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DLI     +L+  D    +     + I ++L+DE QDT+  Q+ +++ L        
Sbjct: 180 DFDDLICLPVQILETSD---QVAMAWRERIGYLLVDECQDTNDAQYRLLKVLA------- 229

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S       VGD+ QSIY++ GA  + +L+ +R   +          +I+L  ++R  
Sbjct: 230 ---SPRGNFTCVGDDDQSIYAWRGANAENLLQLERDYPQ--------LKVIKLEQNYRCP 278

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             +L   + + +   +A   +  S                +++W                
Sbjct: 279 NRVLRAANALIAHNPHAHLKTLWSDQ---------KDGERIRIW---------------- 313

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                     +   +   A +I   IS +         G  + +   D  +L R    + 
Sbjct: 314 ----------ECRDSEHEAEKITAEISYL---------GDAKQVPWSDFCILFRGNFQSR 354

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            +    + L+    I           +   +K+L++  R +++ +DD +F+  ++SP   
Sbjct: 355 PLEKALQLLR----IPYHLTGGTAFLERQEVKNLLSWLRLLVNPDDDAAFLRAVQSPKRE 410

Query: 448 FSEDDIFKICTQRHETETVYE-------YIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                + K+       +            +Q+      +        + EL       S 
Sbjct: 411 VGSTSLAKLAELAAAKQMPMSRAAESLGALQQLPARAANGLNKFTDILRELRQQVSRVSA 470

Query: 501 HDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
            +    +        +   +  +E         ++E        E   +     +   + 
Sbjct: 471 AELVRRLAEVSGLLTELREQSNDEASYQRRKRNVEEL---AEWFEGGPFG--ASVGDLVS 525

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
           Q     +       N+VR+MT+H +KGLE   VF+      V  H+              
Sbjct: 526 QLALLSRNDKDDGGNQVRMMTLHASKGLEFRYVFIAGCEDGVLPHEVSL----------- 574

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK---HSNTSN 672
                                   ++   +E  RLLYVG+TRA +QL +           
Sbjct: 575 ------------------------EEGNVQEERRLLYVGITRAKEQLWMSYSKCARRFGE 610

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
             +     ++D +       +    +       +        
Sbjct: 611 RVRFKPSRFFDELPAEELQRDGADPVVDAERKQERAKAGLAA 652


>gi|289422673|ref|ZP_06424513.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
           653-L]
 gi|289156852|gb|EFD05477.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius
           653-L]
          Length = 625

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 106/604 (17%), Positives = 210/604 (34%), Gaps = 125/604 (20%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           +  K      + +     E   +++    Y+ ++S+     + + +   YE  KKK   +
Sbjct: 119 KFLKVKDFSDDDVLDVLGEISYVKNDLIDYRDYESSTFESEVFQKIFELYEREKKKYNKI 178

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D++I   DLLK+    A +   + Q   +ILIDE QD + +Q+EVIR +        
Sbjct: 179 DFDDMLIKAFDLLKEN---AQVLSIVRQVFRYILIDEFQDINKVQFEVIRLIA------- 228

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    +F VGDE QSIY F GA P  +L   R  +            + L  ++RS 
Sbjct: 229 ---SPQNNIFVVGDEDQSIYGFRGARPDFMLDFDRYFE--------GAKKLVLKNNYRSK 277

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ +  K+    +N       ++                                 + 
Sbjct: 278 RTIVDMSSKLIKNNKNRYEKEIVASR----------------------------NEEVKL 309

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
            +    DS  +       A +IA  I +M+         K    Q +D  V+ R  +   
Sbjct: 310 RFIEPKDSDDE-------AIQIANQIKSMVE-------KKGSDYQYEDFSVIYRTNRQAR 355

Query: 388 LITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                      D +I  V  D    + +H    D++A  R  ++   +  +V ++  P  
Sbjct: 356 PFVDAF----MDQRIPFVLKDSAKTIYEHWVSLDILAYLRIAMNIGTNDDWVRIINKPFR 411

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             S+  + +        +++ +     +          ++ + E ++  +   P    + 
Sbjct: 412 YISKASVSRASKSDDFFDSLLKDDDLKSFQKRD-----LEDLFEDLNYVRGLRPEYAISY 466

Query: 507 ILGAKKGRQQFISRFGNEV------IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
           I       +  +             +++LDE    +   + +      +    +++    
Sbjct: 467 IRSTLDYDRYVLEYCHERRVKSKAIVEILDELETSSKAFKTS-----FDFFKHIDEVKEE 521

Query: 561 IKRAHSANHN----------EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           +++  + + N           V + T+H++KGLE P V++      +             
Sbjct: 522 VRKRTNKSKNPASLSDFETKGVVLTTMHSSKGLEFPNVYIAGLNEGLVP----------- 570

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                V    + + +   EE  RLLYV +TRA D L+I   +  
Sbjct: 571 --------------------YVRSSDEDIDEDHLEEERRLLYVAITRAKDSLVISSPAKR 610

Query: 671 SNEK 674
             ++
Sbjct: 611 FGKR 614


>gi|229175134|ref|ZP_04302650.1| UvrD/REP helicase [Bacillus cereus MM3]
 gi|228608270|gb|EEK65576.1| UvrD/REP helicase [Bacillus cereus MM3]
          Length = 957

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 122/870 (14%), Positives = 260/870 (29%), Gaps = 155/870 (17%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
           K+S +L + + K  +E + I       K+ +S  A L++       YE+   +   LDF 
Sbjct: 150 KQSQELLKWINKLSEEIVDI------NKLIESDEARLSVLGKCYKVYEQLLIEENALDFS 203

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
            + + T +LL+       +R  +++++ +++IDE QDT+ IQ +++  L           
Sbjct: 204 TIQLETYNLLRNH---KDVRNNLNEKLQYLMIDEFQDTNTIQEKLVFLLAG--------- 251

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              + +  VGD+ Q +Y F GA  + +L   +   K           +EL  ++RS   I
Sbjct: 252 -KQQNICVVGDDDQGLYRFRGATIRNILEFPQNFPKGI------CQQVELSTNYRSNPAI 304

Query: 271 LTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
           +   ++                      H S+++ Q   V                 + S
Sbjct: 305 VQFYNQWMEQNNWSQNGTTYRFDKKITAHESNKVNQKTVV-----------------KVS 347

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                D    E    + A +    IS+                    +  L R  K+  +
Sbjct: 348 GEDGLDDWESEVYLFLQAMKKEGEISDW-----------------NQVAFLFRSVKNPRV 390

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIK-DLMALGRFILSQEDDLSFVCMLKSPLFN 447
           +         +  I V      +  +   I+  L A+            +      P + 
Sbjct: 391 LN--LSRYLEERGILVYSPRSNLFFERREIRLALGAILFLFPMYAQLRKWNDSAFLPEWE 448

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           F +  + +   +  + E               K +  +  +++ +  A     +      
Sbjct: 449 FYDACLLEFAEELRKPEN-----HDLLRWCKEKARTHV-TLNKNLDYAFSGLFYQLIQFE 502

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ--------------ELISE 553
           L +        +   +  +  L +F     + E   + S+               + I  
Sbjct: 503 LFSDLLSDNVFTVKDSREVRNLSQFSKLLTKFEYLHHISVFTQKNIGDSVVRFFNQYIRF 562

Query: 554 LEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L Q         S       V  +T+H +KGLE P+V +    S            +   
Sbjct: 563 LLQGGIDEYEDDSEYAPSGCVSFLTIHQSKGLEFPIVIVGSLESTPRKQYTDVDELLQTD 622

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
               P                    + ++++   ++ RL Y   +RA + L++    N +
Sbjct: 623 FYQKPPF------------------EPIERTKIYDFYRLYYTAYSRAQNLLVLSCQENVA 664

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
           N   +                          +I    +           + P      + 
Sbjct: 665 NGPGTR-------------------------NIPSKYFTESYRHLKSWRDEPTIYNIELA 699

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
           Q+ D     +  F+   N            +  K    L            G ++H+ ++
Sbjct: 700 QVKDVNIKREYSFTSHINLFET------CALQYKFYKELGFAPVRQGATIFGTLVHQTIE 753

Query: 792 VIFTLP---------EHKRKNFI----TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
            I             E   +++          +       +  +  L  +   +E     
Sbjct: 754 DIHKSALKNEAYLITEENIEDWFNTNYQHLSKRERVYLAPQTQEAALKQVKSYVEKQNGD 813

Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
            +   ++         ++  K   I+ G ID +      + I ++K+        E    
Sbjct: 814 WSYIQEA------EVDVSLVKDKYILKGTIDLVKGDGDTVEIVDFKSEKKPDLVKEQDAL 867

Query: 899 -THIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             +  QL +Y  ++++    K     L Y 
Sbjct: 868 YRYKRQLEVYAHLVEERTNYKVSKMHLYYT 897


>gi|254197985|ref|ZP_04904407.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei S13]
 gi|169654726|gb|EDS87419.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei S13]
          Length = 1270

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 126/1009 (12%), Positives = 279/1009 (27%), Gaps = 150/1009 (14%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       + +   R G  G   L +    
Sbjct: 452  RYTLAVNQRSTPAIVDACNRVFGANPRAFVLDG-----LDYEPVRAGSRGRAPLVDATDP 506

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
               +                 +++         A     M G            + A  I
Sbjct: 507  LAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAASGI 566

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D   
Sbjct: 567  AVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGDLRR 622

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV------------ 484
                L S  F      ++++     E + +    +  +  G                   
Sbjct: 623  LRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASGNGGGARAASAGAPAPSPADAD 682

Query: 485  ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFT 536
                ++       + +       +  + G  +  ++ ++    E      + L E     
Sbjct: 683  AMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQAR 742

Query: 537  LRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +     +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF      
Sbjct: 743  ASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLND 802

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                      +      +D+ G  +        +       +   +    E  RL+YV +
Sbjct: 803  GGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVYVAL 860

Query: 656  TRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++   + W    
Sbjct: 861  TRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQVLA 920

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK-------- 765
                     P+           + +  +      +   +   I + S++ +         
Sbjct: 921  GGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDESGI 980

Query: 766  -----------------------------------------GKTNLESLLSDNQTFNRGL 784
                                                      +   + +L+  +    G 
Sbjct: 981  ARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAEDDILAFPRGAAAGE 1040

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------- 835
             +H+LL++                  +          + L   +TRL+ +          
Sbjct: 1041 CLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELVPGM 1100

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQISI 873
             +         +E+           + +                      + G ID I  
Sbjct: 1101 RLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDMIVE 1160

Query: 874  SQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
                 +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1161 HDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1209


>gi|156036288|ref|XP_001586255.1| hypothetical protein SS1G_12833 [Sclerotinia sclerotiorum 1980]
 gi|154698238|gb|EDN97976.1| hypothetical protein SS1G_12833 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 999

 Score =  230 bits (587), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 102/641 (15%), Positives = 193/641 (30%), Gaps = 150/641 (23%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           ++A Y+   + + +LD++DL++   +LL+               I  +LIDE QDT+L+Q
Sbjct: 173 VHAEYQATLELSNLLDYDDLLVRCVELLRLHPSCV-------SNIEAVLIDEFQDTNLVQ 225

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++++R L              + +  VGD  QSIYSF  AE K   R  R          
Sbjct: 226 FDLMRLLAAY----------QKRITIVGDPDQSIYSFRAAEIKNYKRMLRQYP------- 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RS+  IL     V     +    S   T  +  R              
Sbjct: 269 -DTVTISLEENYRSSGAILLTALNVIEQDSSRIAKSLLPTHIVGTRPV------------ 315

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                  L + ++A   A  I   I   +G           ++ 
Sbjct: 316 -----------------------LRKLATAQKEAEWIIQEIQRTMG-------MTGDLLD 345

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L+R    + +I            I+          D + IK L+   R I   +
Sbjct: 346 LNDFAILLRSSSLSRVIESSL----GKAGIAYRMVGGLRFYDRVEIKTLLDYLRVINLPD 401

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY------------IQKFANCGISK 480
           ++ +   ++ +P     E  I  +  +  +++                   K        
Sbjct: 402 NNDALARIINTPSRRIGETTIKSLLEEAEQSKMTLWALILDSVQGRRRTKTKLTTSVGKS 461

Query: 481 FQHVIKYIHELIH-----IAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEF 532
               +  I   +      +++  S       I+      +    + G+      D + E 
Sbjct: 462 LSIFVDIILTGMKKIADPLSRENSIVKIMEFIIEKISYEKWLELQHGDIHKARWDNVKEL 521

Query: 533 LNFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAHSANH-NE 571
           +                          ++++  SL + ++ +       K     +   +
Sbjct: 522 IAQATDFQGLISNGYEDDSLPKIDGLEQEDASDSLTQFLANVALASEVKKEDDQGSSTPQ 581

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           + I T+H AKGLE P+VF+         H                               
Sbjct: 582 ITISTIHAAKGLEWPIVFIPGAYQGSMPHS------------------------------ 611

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                   +    +E  RLLYV MTRA   L +      S ++ +    +        H 
Sbjct: 612 --------RAEDTDEERRLLYVAMTRAKALLNMSCPLKNSLDELTTTCPFLSARGLRAHL 663

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
           D++   ++        + +   + T           E  + 
Sbjct: 664 DQKGPPLRSNTVQCLAQILRRPFPTKESIAESSACLELTED 704


>gi|296332606|ref|ZP_06875067.1| putative ATP-dependent DNA helicase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673887|ref|YP_003865559.1| putative ATP-dependent DNA helicase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150524|gb|EFG91412.1| putative ATP-dependent DNA helicase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412131|gb|ADM37250.1| putative ATP-dependent DNA helicase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 759

 Score =  230 bits (587), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 96/621 (15%), Positives = 187/621 (30%), Gaps = 122/621 (19%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIR--DRFNTYKMFKSTLASLTLAKYLNAHYE 138
           +K +  + I++K   + + L++           +R      ++           L  HYE
Sbjct: 252 KKALYEEGIDEKEFPVDQALQQIGFWKNTYVPNERIPLQDGWEKQ------VYRLYEHYE 305

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
             KK++   DF+D+     +L       + +  +      +ILIDE QD + +Q+++++ 
Sbjct: 306 RQKKEHNQFDFDDMASACYELFID---RSDLLEQYQSRFTYILIDEFQDINPVQYKIMQM 362

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L           S  + L  VGD+ QSIY+F G+ P  +L  ++               I
Sbjct: 363 LA----------SPEQNLCCVGDDDQSIYAFRGSNPSFILDFQKDYP--------GAKTI 404

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L  ++RST  I++  D V    +N      ++                           
Sbjct: 405 YLTANYRSTHPIVSSADIVVKKNKNRYAKMLEAARDDVQVPM------------------ 446

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                         +D   +       A  +   I   I                +D  V
Sbjct: 447 ----------LFYPYDEEEE-------ATMVVSDIKEKIQNG----------ASPEDFAV 479

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSF 437
           L R       I        +   I    +           ++ ++A      +++D  + 
Sbjct: 480 LYRTNSGGRAIYERL----HHSSIPYTADRGVQSFYSRRIVRQILAYLYASQNEDDTEAM 535

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
             +L  P     +  +  +       +                    IK I       + 
Sbjct: 536 KHLL--PALFLKQSALNTLKALSITEDCSMIKALAKLPDLKPFQLDKIKKIVPFFASLRT 593

Query: 498 CSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
             P +  T   G     +    R        +  D L +      +       ++ + ++
Sbjct: 594 MKPVEAITFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDIKVVAKKF-----KTIPDFLA 648

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            ++      K       N V++MT+H +KGLE   V+++        H            
Sbjct: 649 HVDHMRAAEKNK--TGENGVQLMTIHRSKGLEFKTVYVLGAVDGSIPHDFSL-------- 698

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                +  +   ++  EE  RLLYV MTRA   L +   +N   
Sbjct: 699 ---------------------ETARKGDEAPLEEERRLLYVAMTRAKQHLYLSCPANRRG 737

Query: 673 EKKSNQRTWYDMVYDSFHNDE 693
           +     R  Y ++  +     
Sbjct: 738 KTAHRSRFLYPLLQHARQPLH 758


>gi|257793016|ref|YP_003186415.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479708|gb|ACV60026.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 706

 Score =  230 bits (587), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 95/547 (17%), Positives = 162/547 (29%), Gaps = 125/547 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K +   LDFED+I++   L +  +       +  Q   ++++DE QDT+
Sbjct: 274 LTKVYAAYETLKAERKTLDFEDMILHAIRLFRTDEA---FAKRWRQRWRYVMVDEFQDTN 330

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW  +  L +          +   LF VGD+ QSIY F GA P  +    R       
Sbjct: 331 TAQWLFLLELVK----------AHNNLFVVGDDWQSIYYFRGARPDLMKEFLRRFP---- 376

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   + L  ++RS   I+ V  ++  + +             R  + R    G + 
Sbjct: 377 ----DAKRVTLETNYRSHDLIVDVGRRIIRLNDGH-------QLPKRVVAHRSMPEGAIA 425

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V S  +                          AR +A  +  +             
Sbjct: 426 QIVTVRSDLE-------------------------EARFVAQELQRLRKE---------H 451

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D  VL R    + L          D  I           +   +K ++   R   
Sbjct: 452 GVSWSDCAVLYRTNIQSRLFEEAL----ADADIPYHVVGDKHFYESPDVKIILDYLRTTQ 507

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              D   +  +L  P      D + ++          +E +         K +  +  I 
Sbjct: 508 DTSDPTVWGHLLNRPKRYIPIDVVHEVQHG------GWEAVVAH-----PKCRAFVTTID 556

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L  I     P      ++    G  +            +D  +    R    + +S   
Sbjct: 557 TLRRI---EEPSKAIQWLVDNHPGLVRQQDEDEPIKW--VDSLIASASRY--KTVASFLR 609

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +  + +               V++MT+H AKGLE   VF+      +  H         
Sbjct: 610 FVDWIIEKSKE------PKDEAVQLMTIHKAKGLEWTTVFVAGLAEGLLPH--------- 654

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      K LK     E  RL YV  TRA D L +     
Sbjct: 655 --------------------------KKALKGEELREETRLCYVAATRARDNLYLMAAKW 688

Query: 670 TSNEKKS 676
             ++++ 
Sbjct: 689 YGDKERE 695


>gi|150377540|ref|YP_001314135.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
 gi|150032087|gb|ABR64202.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
          Length = 1051

 Score =  230 bits (587), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 133/962 (13%), Positives = 280/962 (29%), Gaps = 133/962 (13%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVS--LSMETGNPTILKKAQTLQQASQ 58
            L+  +G + +     +   L       ++   + ++  +S +T      K  + L++AS+
Sbjct: 179  LRATYGTTKDS--ARLEMALSRAVNALLTSFPESIADTVSAKTAREAFDKDFEALRRASR 236

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            T  +   ++L            + +    +  +    L   +  + DE            
Sbjct: 237  TDALGSDWALWQRLR-----KLRLSNSKTKAPEGYDPLASAVVAAADELR--YHPGPLMD 289

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              +   A +  A+ + + YE  K+   ++D+ D+I+ T  LL+     + I      EI+
Sbjct: 290  AERHLTALVHGAQEIMSAYENEKRARGLIDYADMIVETEVLLRT---RSDILDAALAEID 346

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             ++IDE QDT+ +Q+ ++  L                   VGD KQ+I  F GA+P+   
Sbjct: 347  CVVIDEFQDTNPVQFAMLWRLAA----------RAPRALIVGDRKQAIMGFQGADPRLSE 396

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                       +A    S+  L  ++RS   I+T V+ +        G +   +     +
Sbjct: 397  AL---------DAAHPASVDPLTQNWRSDPRIMTFVNAI--------GPALFPSGYDALK 439

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            S R                             +  + +  + S + +   IA    ++  
Sbjct: 440  SMRPKSG------------------------ETALEFIEFDGSKAKVFEGIAAHARDLTD 475

Query: 359  TDTIFSNG---KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
               +  +    + R  +  DI +LV    D   +    R    D+ + V   +       
Sbjct: 476  QKILIIDKSTQETRQARPADIAILVYSGIDARRVATSLR----DFGLPVRLAEDGWFLSQ 531

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            + I+   A    +    D L+                   +           +     A 
Sbjct: 532  I-IQVARAALALVADPTDRLA-----------------ALLLLSLGPDRMSLDASLAAAI 573

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLN 534
                     ++ + E    A+  +       +L      +   +       +  L     
Sbjct: 574  DDNLIQFDRVRALAEFAEEARHLTASAALPRVLQIAGIEEWISTLPDRAAAEADLGRLFA 633

Query: 535  FTLRNEQN----------SYSSLQELISELEQYPPT----IKRAHSANHNEVRIMTVHTA 580
                 +              +SLQ  +  L                     + + T H +
Sbjct: 634  EASAFDSAETSLREAVGFHGNSLQSFLGWLADQAERGLDYRPDREGWEVEGIEVSTWHAS 693

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---PGIPIWIPQSKSRNNIVSDLIK 637
            KG E P+  +           +  +       N D       +    S            
Sbjct: 694  KGREWPITIVGGMDFSFPERGNTMRAEFTSFGNFDNVLDSAGLSWFPSFDCPEAQIVFAD 753

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
               +  + E  R LYV +TRA D+L++               T  D++            
Sbjct: 754  RRVEQDEREAARALYVALTRARDRLVLALPLKE-GSPDKRPETMADLLRRRTQLGLGSGT 812

Query: 698  IKL----TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
            +        ++ +      E+            +        E        S   +    
Sbjct: 813  VTACGQQVPALCRTIPKDTEYVYPDASADSGVHKVWGVDETSELVARTPWRSSPSSLAAP 872

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE-HKRKNFITSYCTKN 812
               L P+         +           RG   H   +V+   PE   R    T      
Sbjct: 873  DGRLGPALTHIDLGVPVP-KQKFGSATERGTAYHLAFRVLAERPEFSARLPAAT------ 925

Query: 813  AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP-KKDIIISGRIDQI 871
                     K +    +       +   +    + ++S    +          +  ID +
Sbjct: 926  --GLSDDTIKAIEGQASA------LRAWLGGLGFHQLSFEVPLQLRADDGSETNAIIDLL 977

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI-YVSEP 930
            + S   + I ++KT      +       ++ QL+ Y  +L + YP K +  L++ ++ E 
Sbjct: 978  AESDDALIIVDHKTGPCP--DPNLRFGGYLPQLTAYADLLTERYPEKPVRFLVVNWMDEG 1035

Query: 931  KV 932
             +
Sbjct: 1036 HI 1037


>gi|261879280|ref|ZP_06005707.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334111|gb|EFA44897.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 1115

 Score =  230 bits (587), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 143/959 (14%), Positives = 289/959 (30%), Gaps = 97/959 (10%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            L   ++        +   Y  ++  +         G+         L             
Sbjct: 223  LRSMKTEAYQVMADFAKAYQDLAGKHGLEDAHFNRGSQNAPGYFAKLASGDFLDDKFPSK 282

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            ++L +         + ++ T E      ++   L +++ E  K     N+  +    L  
Sbjct: 283  TMLKAIEDHTSMVKKSDLNTPEGQIIVSEVGVLLDRAEKERKKQCAVINSVDLTLRNLYE 342

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHILID 183
            L L   +          N       L+ NT  LL     +  S +I  K   ++ +I+ID
Sbjct: 343  LRLLGRIEQEVSTINTANN----NYLLSNTQKLLNDLIDKQDSPFIYEKTGAQLRYIMID 398

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS +QW   + L +D     N          VGD KQSIY +   + +        
Sbjct: 399  EFQDTSTVQWNNFKVLLDDCMAHNNGS------LIVGDVKQSIYRWRNGDWRL------- 445

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF---SIPENAQGLSEDSTTTIRHRSS 300
             Q        +  I  L  ++RS  +I+   +  F   +   +   L+         +  
Sbjct: 446  LQNLTPENDNRILIKPLDTNYRSKQNIIRFNNAFFKIAAQTTSDDALAALQALDAPPQLL 505

Query: 301  RIGQVGTVQLWEQVVS-QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            R          + V       Q      + +     LP+++  + +   ++  + +++  
Sbjct: 506  REALDIRQAYDDVVQKVSPKHQTEDASRAGSVTIKLLPRDNYEAQVIEEVSRILEHLLEA 565

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK-----ISVVGNDRFILTD 414
                       I  K I +LVRK     L+    +            + +V ++ F L  
Sbjct: 566  G----------IPPKKIAILVRKNNHIQLLANYFQQNPITVNGEAQMVRMVSDEAFRLDA 615

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSP-LFNFSEDDIFKICTQRHETETVYEYIQKF 473
             LA+  L+     +   +D L+   ++K+        ++             +    ++ 
Sbjct: 616  SLAVCTLVRAMHLLTHPDDKLAAAALVKAYHKIGHDGEETDDSQLFVGNDNLLTLLPEEM 675

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                                        D    +      R   + R   +    +  F 
Sbjct: 676  TEHWDELL---------------STPLIDMAEQL-----YRIFRLDRLDGQS-AYVCAFF 714

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            +      +N  +S++E I E E              N +R++TVH +KGLE   V +   
Sbjct: 715  DHLSLFMRNHVASVEEFIEEWENSISGKAIHSDEV-NGIRLLTVHKSKGLEFDNVIIPYC 773

Query: 594  GSQV-FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +    + +  M      +  P +P+ +   + + +I +   +        +   +LY
Sbjct: 774  DWDLEMQGEVLWMMPPSEPFSQLPVVPVNLYAKRLQRSIYNIDYQSEHLKNYVDNLNMLY 833

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V  TRA   L +       N+           V D    +   K    T     +  +  
Sbjct: 834  VAFTRAGSNLFVIG----RNQAPQFPSLLIRQVIDHCQAESDGKAEDKTQDPEVEPALMM 889

Query: 713  EWSTHHPENTP----------LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
               T   +             ++ E   +Q  +  +  ++       +         S  
Sbjct: 890  PKHTVEDDEDDITTFRIGRLCVDEETHKEQTRNVFEQTEEGIRTAIRNYEAKACFRQSND 949

Query: 763  DTKGKTNLES---LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                 T  E    L         G I+H LL  I  + +  R          +  L+   
Sbjct: 950  SADFVTPDEEMERLEKRQSYIQTGNILHTLLASIRNVDDIDR---AIDQLEFDGVLYDKP 1006

Query: 820  -EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI--NCPKKDIIISGRIDQISISQQ 876
               + L   IT  ++   +    +      V     I       D +   R D++  + +
Sbjct: 1007 MNREELRRMITERMQTQQVADWFAPTGQ--VFNECTILSYDSHLDRVRENRPDRVIWNGK 1064

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             + + ++KT              H  Q+  Y  +L+      S+   L Y+   +V  +
Sbjct: 1065 EMVVIDFKTGR--------EHEEHHVQVRNYMDLLRGM-GYASVSGYLWYIRTNRVVSV 1114


>gi|213403406|ref|XP_002172475.1| ATP-dependent DNA helicase srs2 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000522|gb|EEB06182.1| ATP-dependent DNA helicase srs2 [Schizosaccharomyces japonicus
           yFS275]
          Length = 819

 Score =  230 bits (587), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 100/566 (17%), Positives = 171/566 (30%), Gaps = 138/566 (24%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   +KN  +DF+DL+I    L+                I HIL+DE QDTS I
Sbjct: 191 ELYKLYQAVLRKNGYVDFDDLLILFIQLVHDHTYCID-------NIKHILVDEFQDTSKI 243

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ +I+ L  D             +  VGD  QSIY F  AE   ++             
Sbjct: 244 QYLLIKLLARDTSG----------ITIVGDPDQSIYGFRSAELGNLVMMTTDFP------ 287

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +  L  ++RS   IL     + +  +     +  ++  +  +             
Sbjct: 288 --DTRVFHLETNYRSADSILETAMAIINQDKARPQKTLRTSHRLSIKPYFK--------- 336

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                     +  S    +  +A  I  M+ +          + 
Sbjct: 337 --------------------------EFDSNDQESAWVACEIKRMVKS-------CPGLF 363

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              DI +LVR    T  I            I+          D   ++D++A  R +   
Sbjct: 364 SYSDIAILVRSSSLTRAIEHALAE----QGIAYKMVGVHKFFDREEVRDVVAYARVVA-F 418

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE---------------TVYEYIQKFANC 476
            D+ + + ++  P  N  +  + +I  +                    ++ + + K    
Sbjct: 419 RDEQALMRIINVPSRNIGKVKVERILQETERRHTSMWNTLCLLNNGSFSLSQRVDKQFQR 478

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFL 533
            + KF HVI         +   S      ++L   K  +    +      E  + + E +
Sbjct: 479 ELGKFMHVINTTEASCDSSAPFSISSMLEILLRKVKYYEYLKKKHPSTYEEKWENVMELI 538

Query: 534 NF---------TLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGL 583
                         +E +   +   L   L           +    ++V I T+H AKGL
Sbjct: 539 RQSDVLGEQGVLFDDEDDISENRLALHRFLANAAIVGSTDNNEETRHQVTISTLHAAKGL 598

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E PVVFL      +  H     +                                     
Sbjct: 599 EWPVVFLPCLCDTILPHSRSTDV------------------------------------- 621

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN 669
            +E  RLLYVG+TRA   L +     
Sbjct: 622 -DEERRLLYVGITRAQAMLYMSSFRG 646


>gi|251795299|ref|YP_003010030.1| UvrD/REP helicase [Paenibacillus sp. JDR-2]
 gi|247542925|gb|ACS99943.1| UvrD/REP helicase [Paenibacillus sp. JDR-2]
          Length = 692

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 98/563 (17%), Positives = 194/563 (34%), Gaps = 99/563 (17%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              K +   YEE K++  ++D++D+++    LLK+ +    +   +     +++IDE QD
Sbjct: 213 RQLKLIFTSYEEWKRQLDLIDYDDMLLEAYQLLKQDE---NLLAMLQNRFRYVMIDEFQD 269

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ+E+I+ L +            R L  VGD+ Q+IYSF+GA    +L  ++     
Sbjct: 270 TNTIQYEIIKLLVQ----------PHRNLMVVGDDDQTIYSFNGARNDYILNFEKQFP-- 317

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L +++RS + I+ + + V    +  +  +  +            + G 
Sbjct: 318 ------GAKNIILDVNYRSGSGIVGLGNAVIRHNKQRRSKTLLTAKPHGLPPVYA-RPGN 370

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                                 A  I           T+    +
Sbjct: 371 SD----------------------------------DEADLIVN---------TLLQQKE 387

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           K+    +D  +L R    +     +   L       +       L +   IK ++A  R 
Sbjct: 388 KKGRSFRDFAILFRTASSSR---AIFDQLVIRQVPFIDYGSGESLYEQWVIKPVIAHLRL 444

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV----YEYIQKFANCGISKFQH 483
            + + +  +   ML +      +   F     + + +           +  +    K + 
Sbjct: 445 SIDRRNFDAMEAMLATMYVRPDQAMAFIWNEDKKQAKKWPLIHLTRFPEIKSFHQDKIKE 504

Query: 484 VIKYIHELIHIAQFCSPH----DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            IK I  L  +    +      +F+   + A K          + + ++LDE      R 
Sbjct: 505 RIKLIRSLEKLKPEAAIRRLRIEFYDQFIEANKSGPALTEHKDS-LKEMLDELEASAKRF 563

Query: 540 EQNSYSSLQELISELEQYPPTI--KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           +    ++    I E+      +   +  S+N + V  MT+H +KGLE PVVF+      +
Sbjct: 564 D--GITAFLAFIDEIAAKHEEMKRMKLDSSNADAVNFMTIHKSKGLEFPVVFVCGVSEGI 621

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H                         K+ +        ++ ++  EE  RL YV +TR
Sbjct: 622 LPHSSAITAE------------------KNSDRSAIQAGDNVGEAAMEEERRLAYVAVTR 663

Query: 658 ASDQLIICKHSNTSNEKKSNQRT 680
           A ++L I   +    +  +    
Sbjct: 664 AEEELYISSPAYYRGKPAAVSSF 686


>gi|254974366|ref|ZP_05270838.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-66c26]
 gi|255091760|ref|ZP_05321238.1| putative ATP-dependent DNA helicase [Clostridium difficile CIP
           107932]
 gi|255313490|ref|ZP_05355073.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-76w55]
 gi|255516178|ref|ZP_05383854.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-97b34]
 gi|255649274|ref|ZP_05396176.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-37x79]
 gi|260682446|ref|YP_003213731.1| putative ATP-dependent DNA helicase [Clostridium difficile CD196]
 gi|260686045|ref|YP_003217178.1| putative ATP-dependent DNA helicase [Clostridium difficile R20291]
 gi|306519374|ref|ZP_07405721.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-32g58]
 gi|260208609|emb|CBA61329.1| putative ATP-dependent DNA helicase [Clostridium difficile CD196]
 gi|260212061|emb|CBE02644.1| putative ATP-dependent DNA helicase [Clostridium difficile R20291]
          Length = 688

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 102/550 (18%), Positives = 192/550 (34%), Gaps = 115/550 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE K K   +DF+D++I T  LL     +      +     +ILIDE QD + +Q
Sbjct: 176 VYNLYEEQKSKVNKIDFDDMLIRTYYLLLNNKSA---LEMVRNVYKYILIDEFQDINKVQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +EV++ +                +FAVGDE QSIY F GA P  +L  ++          
Sbjct: 233 FEVLKLICSPL----------NNIFAVGDEDQSIYGFRGARPDFLLEFEQYFNN------ 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L +++RS ++I+   +++    +N                   G  G+V    
Sbjct: 277 --TKKIILDINYRSKSEIVYTANRLIDKNKNRYEKV---------IKCSQGDGGSVT--- 322

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           + S  DS  +       A  IA  I + I  D          ++
Sbjct: 323 ----------------YISPHDSEEE-------ALYIAKEIIDEIQKDY---------VE 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQ 431
             D  V+ R    +  +  +      D +I  V  D    + DH A +D++A  R  ++ 
Sbjct: 351 YSDFAVIYRTNIQSRALVDVF----MDMRIPFVVKDSVITIYDHWASQDILAYLRIGINP 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           + +  ++ ++  P    S+D I  +  ++     +             K    I  +   
Sbjct: 407 KSNKDWLRIINKPFRYISKDSINMVKDEKDFITALINKCNLH-----PKQVKTINDLEID 461

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI------DVLDEFLNFTLRNEQNSYS 545
           +      +P +  + I  +    +  +    N  I      ++L+E  +          +
Sbjct: 462 LSYLNTLNPKNAISYIRTSLDYDRYVLDYCSNRKIKTNGLVEILNELESSATNF-----N 516

Query: 546 SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           ++ E +  +++    +   +       V   T+H+AKGLE   V+++        H+   
Sbjct: 517 TVTEFLEHIDRVKTELTENNKNKQTEGVIFTTMHSAKGLEFRNVYIIGVNEGTIPHEKSY 576

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            +       +                                  RL+YV +TRA ++L I
Sbjct: 577 DICKEEKKEEQLEEE----------------------------RRLMYVAITRAEEKLCI 608

Query: 665 CKHSNTSNEK 674
               N   +K
Sbjct: 609 SSTLNKYGKK 618


>gi|115390643|ref|XP_001212826.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114193750|gb|EAU35450.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 981

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 97/659 (14%), Positives = 193/659 (29%), Gaps = 155/659 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE     + +LD++DL++   +LL++              +  +L+DE QDT+ I
Sbjct: 184 QVYREYEAHLAASHLLDYDDLLVRCAELLRRHPSCV-------SNVQAVLVDEFQDTNHI 236

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E++              S  R +  VGD  QSIY F  AE K + R ++  +      
Sbjct: 237 QYELMNLFA----------SQNRRITVVGDPDQSIYGFRSAEIKNLGRMQQRYR------ 280

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +++ L  ++RS+  IL+    V     +        T ++                
Sbjct: 281 --DTAVVLLEDNYRSSGSILSSAQDVIEQDTSRPAKKLQPTHSVGTMPVLRKLP------ 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                        +A   A+ I   I   +           +++
Sbjct: 333 -----------------------------TADAEAQWIVLEIKRCMA-------MTGKLL 356

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L+R    +  I          + I           D + IK L+   R I   
Sbjct: 357 DHSDFAILLRSASLSRQIESEM----GKHGIPYRMVGGLRFFDRVEIKLLLDYLRVISQP 412

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS----------- 479
            +  + + ++  P     E+ I  + +      + ++++I+  A    S           
Sbjct: 413 GNTDALLRIINVPSRKIGEETIRSLMSGAEKNKKPLWDFIKDVAQGRRSTEKTLSKPANH 472

Query: 480 KFQHVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEF 532
                +  I     +L+      +P      ++     R    + +G         ++E 
Sbjct: 473 GLCTFVGLIESSRRKLLECTDNSAPRKLLDYVIKRLSFRDYLTTMYGTNEENRWANVEEL 532

Query: 533 LNF----------------------TLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-- 568
           L                          +       +L   ++ +        +       
Sbjct: 533 LGQADDTKADDDTEQDDRLPEIEGLAQQEAHAGEEALSRFLANVALSTEVRPQEGEDGTQ 592

Query: 569 -HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              +V I T+H AKGLE PVVF+    +    H                           
Sbjct: 593 SQEKVTISTIHAAKGLEWPVVFVPAVYNGSIPHS-------------------------- 626

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                       +    +E  RLLYV MTRA   L +      +   +    + +     
Sbjct: 627 ------------RADDWDEERRLLYVAMTRAQALLYLSYPLEQARSGEETTVSDFLPDKI 674

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                  +       ++   +                E + ++   +D+Q  P+   +P
Sbjct: 675 VESRFRCIGPSLREKTV--YDIADILRRPRPSAEAINEGQVSLISTLDDQWTPEGREAP 731


>gi|108763229|ref|YP_630836.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622]
 gi|108467109|gb|ABF92294.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK
            1622]
          Length = 1220

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 138/946 (14%), Positives = 280/946 (29%), Gaps = 96/946 (10%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP-TILKKAQTLQQASQTQC 61
               GL    +      +        V+   +  + +          +    L++A     
Sbjct: 202  REEGLRAENAAVSDAAEARAELESSVTRCLELCAEARGLDAKGEWSRLLGGLERALNGMT 261

Query: 62   IE-----ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
             E     ERF  L + F          +                 KS     ++ D +  
Sbjct: 262  PENFGQGERFPWLRACF-KADGRNFARLSKGAAGPVREFYWRVFGKSDGSVPRLDDAWAA 320

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            ++     +    L   +   ++    +  VLDF  L++ + DLL+        R ++ + 
Sbjct: 321  WRTAPFEVTFRELLTRVETRHDTELSRRNVLDFTSLLVKSRDLLRAHPE---FRRQVQER 377

Query: 177  INHILIDEVQDTSLIQWEVI-----------RSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            I  +L+DE QDT+ +Q E++           R L  D  +       P  L AVGD KQS
Sbjct: 378  IGALLVDEFQDTNRLQLELVLLLAEKREDGPRELAPDADLVTALPLEPAFLCAVGDRKQS 437

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F GA+        +          +  +   L  + RS   +L+  ++ F+    A 
Sbjct: 438  IYEFRGADVSVFSVLAKKL------VDEGGTRGFLQHNRRSVPGLLSFFNRTFAGVLVAA 491

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                     + +   +           +       Q                      + 
Sbjct: 492  DARAPRPFEVIYVPEQDDLAAVRPSLSETPVVERLQLEEAD----------TAADLRWLD 541

Query: 346  ARRIAYTISNMIGTDTI-----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
            A  IA  +  ++                R  +  D+ +L R          + R     +
Sbjct: 542  ADAIARRLRCLLAPGAPASVAREDGEGLRPARGGDVAMLFRTFTHL----EVYRQALIRH 597

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             +               + DL +L   +   ED L+F  +L+SPL    +  +F +    
Sbjct: 598  GVPHRVLRGRGFYGAQEVLDLASLLALLADAEDALAFAAVLRSPLVGLKDASLFLLAGDA 657

Query: 461  HETET-----VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
              + +       E +   +     + +  +  +  L          +     L     R+
Sbjct: 658  PLSLSSPRLTDPEVLVSLSERERQRLERFLAALPGLRRERDRMGVRELLVAALDVTGYRE 717

Query: 516  QFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA------HSAN 568
                  +  +    +++ L    R ++           EL                 +++
Sbjct: 718  ALAGSPYAEQASANVEKLLALASRRDERGTGGCVAFSRELRMLAENNPTEAQADLLDASD 777

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
               V+++T+H+AKGLE PVV +   G +               ++  P +P  +      
Sbjct: 778  PRAVQLLTIHSAKGLEWPVVVVPSMGGRRRGTSGRAHFERTHGISLRPWVPDSLDD--YT 835

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            ++    +   LK     EY RLLYV +TRA D L++   +     K S        +   
Sbjct: 836  SSRFDAVRAELKAREDAEYRRLLYVALTRAKDMLVLAGGAEPRGGKDSWWHLIDGRLEVD 895

Query: 689  FHNDERVKKIK-------------------LTNSINKDEWIAYEWSTHHPENTPLEREET 729
                + V ++                    L  +  +   +           +      +
Sbjct: 896  ADLRDLVDELDVDTLPPPADPEPPGPEALLLAEARVEAALLRVRGQRVAQAESLGAAVAS 955

Query: 730  IKQLMDEQKIPKKLF-------SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
             + L D    P++                       P  ++  G    E      Q   R
Sbjct: 956  AEALQDFIACPRRFHYVHRLGLRGAPWPWEVLPRGAPPLVEPDGWLPAERPEDLVQRLLR 1015

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---MMTT 839
            G+ + +L      +   +R+  + +       L   +    +L ++ R L +     +  
Sbjct: 1016 GVDL-RLAA--PDVDASERRAHLETLLRDAGALPDEEGMDAVLNTLERFLTSAFARELAR 1072

Query: 840  AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYK 884
            A S   +  +     +        + G +D +  S      +  +K
Sbjct: 1073 APSQTIHRSLPFMLALEGEVG---VEGAVDLLWESPQGEAVVVAFK 1115


>gi|332177326|gb|AEE13016.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707]
          Length = 789

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 113/736 (15%), Positives = 209/736 (28%), Gaps = 144/736 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           KN     + K+  D K  L   Q            Y           L     + Y +  
Sbjct: 132 KNYTPTRVLKRISDAKNMLISPQA--YAANQEIRKYDTMNHEGELYKL----YSLYTQRC 185

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K++  +DF+DL+   N L++    +     +I   I+ +LIDE QDT+  Q+E+ R L  
Sbjct: 186 KESNSMDFDDLLFLLNVLIRDFPEA---HQEIKSGIDFLLIDEYQDTNTSQFELARHLVA 242

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D             +FAVGD+ QSIYSF GA    +L  K+              + +L 
Sbjct: 243 D----------HNRIFAVGDDAQSIYSFRGARIANILSFKQAF--------AGAKLFKLE 284

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  I++  + +    +                              + V     +
Sbjct: 285 QNYRSTGHIVSSANALIEHNQQR--------------------------IPKEVYTDLGE 318

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
               Q    +  D           A R+   I+     +          I   D  +L R
Sbjct: 319 GEKLQLYHYTSSDE---------EATRLIDIITQRHDEEQ---------IPLSDQTILYR 360

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +     +         I  V            IKD +A  + I++  ++L+    +
Sbjct: 361 TNAQSRKFEEVL----LSEGIPYVIYGGMAFYARAEIKDAIAYLQLIINPHNELALRRAI 416

Query: 442 KSPLFNFSEDDIFKICTQRHE---TETVYEYIQK---------FANCGISKFQHVIKYIH 489
             P     +  + K+     +     ++Y+ +            +    +K    +  I 
Sbjct: 417 AYPRKGIGDKTLEKVALYAKQQSPQLSLYDALCAAIDSADPVGLSRGVRNKIASFVNLID 476

Query: 490 ELI-HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS 545
            L      +    ++   IL       +       E     D L EF++     E     
Sbjct: 477 SLATAYQHYAKLEEWIAHILRESGIVAELTREDTVESQAKLDNLKEFVSSASEFEARYRQ 536

Query: 546 S--------------LQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                          L     ++     +      + + +   + +++MT+H AKGLE P
Sbjct: 537 DPLNLFAEEPLSTEILSAFAQQIPLLTNQDQDNVEQHSGATPQDRLQLMTIHAAKGLEFP 596

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V++      +                                               EE
Sbjct: 597 YVYIAGVEENLLPSSRSLDT----------------------------------AEMIEE 622

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RLLYVG+TRA     +   S  +   K+        + +       + +       + 
Sbjct: 623 ERRLLYVGITRAQKLCTLSYTSIRTRNGKTELMIPSRFIAELPRAHYTLHEEADPIGTSV 682

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +      T++      +R  T               +      + P     S      
Sbjct: 683 SSYATSYQPTNYSSPATAQRPTTSATSTSTSSSSSTATAQQMLAKSSPVNALESIDGYHV 742

Query: 767 KTNLESLLSDNQTFNR 782
              +      +    R
Sbjct: 743 GDRVRHPRHGDGKIER 758


>gi|71899303|ref|ZP_00681464.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
 gi|71730929|gb|EAO32999.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
          Length = 1242

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 142/979 (14%), Positives = 284/979 (29%), Gaps = 121/979 (12%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             + +  +    L  L   + + +   +  ++E G     KK+      +      ER+SL
Sbjct: 252  PDAALAVAETTLRHLWQTEGAALRSALHTALEEGVLN--KKSYKADALNDLWDWMERWSL 309

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEK-------LKKSQDEFIKIRDRFNTYKMFK 121
              + +   +  P+   +T    +   + +         + ++   ++       T +   
Sbjct: 310  APNAYP--EPHPKLQTLTVAALQAGTNKQGAGRTPNSPVSEAVQHYLDALTSIETARAQH 367

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                   L           K++  V  ++DLI      L      A +R  + Q+    L
Sbjct: 368  RLRRLHRLRAAARLRLTALKRQRRVQTYDDLIQRVAQALDGPHRIALVRS-LRQQYRMAL 426

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT + QW +   +  D         +   LF +GD KQ+IY F G +    L   
Sbjct: 427  VDEFQDTDVAQWRIFHHVFGDTEHAHTADLT-PALFLIGDPKQAIYGFRGGDVHTYLA-- 483

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSS 300
                     A +      L  +FRS   +L  ++ +++   +A  L+   +   ++  + 
Sbjct: 484  --------AAARAERAPPLERNFRSRPLLLRAIEALYTQAGDAAFLTPGIAFRPVQPGTH 535

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI-GT 359
                  +         +      P   +          +++ ++      + I   +   
Sbjct: 536  CRDTDLSNPGVPAPALRVWQAPPPLDSTAKGKPKPWNADAARALCTDACVHAIHQWLADA 595

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             T  +    R + A DI VLVR  ++  L+            I  V   +  L       
Sbjct: 596  QTGRALLDGRPVGAGDIAVLVRSHREATLMQQAL----ARAGIPAVAAGKRSLLTTDEAN 651

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            + +AL   +L   D+      L + L   + + I               + Q+ A     
Sbjct: 652  EALALLLALLHSADEGRLRTALSTVLVGLTAETIATF----DHDSVASRHWQRQALHWRE 707

Query: 480  KFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            +      +  + +L  +            +L    G ++  +         L E L    
Sbjct: 708  RLHSGGPLGLLTDLCALH--------AARLLSLFDGERRLSNYLQ------LGELLQQV- 752

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAH-------SANHNEVRIMTVHTAKGLESPVVFL 590
                     L  L+  L +     K           ++   V+I+T+H +KGLE P+VFL
Sbjct: 753  ---HLRALGLHGLVDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLVFL 809

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                         +   +  +            Q+              K+  + E  RL
Sbjct: 810  PYVAIGRSHVGPGRYCVVHDAQQGRCLHWCLDKQA----PEWQRAETAWKQEQRAEEARL 865

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYVG+TRA   L I   +    E+ +      D           V    +  +I      
Sbjct: 866  LYVGLTRAKHALWIATGTFYQTERTALWPLLGD-PQAVSAQPGIVFDTAVPPAILPRLTP 924

Query: 711  AYEWSTHHPENTPLEREET--------IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                S                      +     E                +     P   
Sbjct: 925  EQPHSVPPARTAQRALLSDWWVYSFTQLAHAKAEPAPDGGRRIAEPLTGGQDEPAWPQDA 984

Query: 763  DTKGKTNLESLLSDN-QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP---- 817
              +     E            G+ +H++ +    L     +  +    T+   L      
Sbjct: 985  IQQPLPGSEVPADPRFTGIRFGVALHEVFERTDFLAWSTWRANVAVPATERGVLLQALRG 1044

Query: 818  ----AKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                A++ +  +  +T L+ +           +    + +  SE+     I     D ++
Sbjct: 1045 SGYVAEDMEAGVALLTPLVGHTLTSVLPEGVRLCDVPTTERRSEIEFQFVIQATAVDALL 1104

Query: 865  -------------------------SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP-- 897
                                     +G ID I       ++ +YK++        H+   
Sbjct: 1105 ALLHDHGLLQQRQSFGMRRRLEGLMTGMIDLIYRHAGRWYVLDYKSNRLPDYTPAHLSVA 1164

Query: 898  ---YTHIAQLSIYEKILKD 913
                 +  Q  IY   L  
Sbjct: 1165 MTDSEYDLQALIYTVALHR 1183


>gi|258620540|ref|ZP_05715577.1| DNA helicase II [Vibrio mimicus VM573]
 gi|258587055|gb|EEW11767.1| DNA helicase II [Vibrio mimicus VM573]
          Length = 534

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 86/565 (15%), Positives = 176/565 (31%), Gaps = 95/565 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W +   + S  +             +  + + L   + +      
Sbjct: 31  GAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRIEELMHGTASGMWCGT 90

Query: 66  F---------SLLSSFFLTQKFTPQKNIITQEINK---KSPDLKEKLKKSQD---EFIKI 110
           F         +      L + F    +   Q + K   K+ +L +K   ++         
Sbjct: 91  FHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQ 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +D         +          L   Y+EA  +  ++DF ++++   +LL+       IR
Sbjct: 151 KDEGLRPAHINAFDPVTQTYLKLYTAYQEACDRAGLVDFAEILLRALELLRSN---QHIR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   HIL+DE QDT+ IQ+  +R +            +   +  VGD+ QSIY + 
Sbjct: 208 EHYQARFKHILVDEFQDTNAIQYAWLRMMAG----------AQSNVMIVGDDDQSIYGWR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + + +                + I L  ++RST  IL   + + +      G    
Sbjct: 258 GARVENIEKFTLEFP--------SVNTIRLEQNYRSTKTILEASNTLIANNSERMGK--- 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                             QLW             +  S  S ++ L +       AR + 
Sbjct: 307 ------------------QLW-------TEGLVGEPISVYSAYNELDE-------ARFVV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                     D  +L R    + ++            ++       
Sbjct: 335 SKIKGWQEQGGTL----------TDCAILYRNNAQSRVLEEAL----LQASLAYRIYGGM 380

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
              +   IKD ++  R I ++ DD +F  ++ +P     +  +  I    R    T+++ 
Sbjct: 381 RFFERQEIKDALSYLRLIANRNDDTAFERVINTPPRGLGDKTLDTIRFAARDRGCTLWDA 440

Query: 470 IQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                N               ++ I+ L         H      +      + +    G 
Sbjct: 441 SIGLLNDQVLTGRAAGALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLFEMYQQEKGE 500

Query: 524 E---VIDVLDEFLNFTLRNEQNSYS 545
           +    I+ L+E +  T + E+   +
Sbjct: 501 KSKARIENLEELVTATRQFEKPEEA 525


>gi|255654798|ref|ZP_05400207.1| putative ATP-dependent DNA helicase [Clostridium difficile
           QCD-23m63]
 gi|296449542|ref|ZP_06891319.1| ATP-dependent helicase [Clostridium difficile NAP08]
 gi|296878135|ref|ZP_06902150.1| ATP-dependent helicase [Clostridium difficile NAP07]
 gi|296261606|gb|EFH08424.1| ATP-dependent helicase [Clostridium difficile NAP08]
 gi|296430888|gb|EFH16720.1| ATP-dependent helicase [Clostridium difficile NAP07]
          Length = 688

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 103/550 (18%), Positives = 194/550 (35%), Gaps = 115/550 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE K K   +DF+D++I T  LL K   +      +     +ILIDE QD + +Q
Sbjct: 176 VYNLYEEQKSKVNKIDFDDMLIRTYYLLLKNKSA---LEMVRNVYKYILIDEFQDINKVQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +EV++ ++               +FAVGDE QSIY F GA P  +L  ++          
Sbjct: 233 FEVLKLISSPL----------NNIFAVGDEDQSIYGFRGARPDFLLEFEQYFNN------ 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L +++RS ++I+   +++    +N                   G  G+V    
Sbjct: 277 --TKKIILDINYRSKSEIVHTANRLIDKNKNRYEKV---------IKCSQGDGGSVT--- 322

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           + S  DS  +       A  IA  I + I  D          ++
Sbjct: 323 ----------------YISPHDSEEE-------ALYIAKEIIDEIKKDY---------VE 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQ 431
             D  V+ R    +  +  +      D +I  V  D    + DH A +D++A  R  ++ 
Sbjct: 351 YSDFAVIYRTNIQSRALVDVF----MDMRIPFVVKDSVITIYDHWASQDILAYLRIGINP 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           + +  ++ ++  P    S+D I  +  ++     +             K    I  +   
Sbjct: 407 KSNKDWLRIINKPFRYISKDSINMVKDEKDFITALINKCNLH-----PKQVKTINDLEID 461

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI------DVLDEFLNFTLRNEQNSYS 545
           +      +P +  + I  +    +  +    N  I      ++L+E  +          +
Sbjct: 462 LSYLNTLNPKNAISYIRTSLDYDRYVLDYCSNRKIKTNGLVEILNELESSATNF-----N 516

Query: 546 SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           ++ E +  +++    +   +       V   T+H+AKGLE   V+++        H+   
Sbjct: 517 TVTEFLEHIDRVKTELTENNKNKQTEGVIFTTMHSAKGLEFRNVYIIGVNEGTIPHEKSY 576

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            +       +                                  RL+YV +TRA ++L I
Sbjct: 577 DICKEEKKEEQLEEE----------------------------RRLMYVAITRAEEKLCI 608

Query: 665 CKHSNTSNEK 674
               N   +K
Sbjct: 609 SSTLNKYGKK 618


>gi|77360798|ref|YP_340373.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Pseudoalteromonas
            haloplanktis TAC125]
 gi|76875709|emb|CAI86930.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease,
            ATPase, recombinase, helicase [Pseudoalteromonas
            haloplanktis TAC125]
          Length = 1213

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 151/1016 (14%), Positives = 303/1016 (29%), Gaps = 157/1016 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKA--QTLQQASQTQCIEERFSLL 69
              E I +           +    +  S  +G+ T  +K     L+       +   F   
Sbjct: 221  RDEYIIRVPAFKKAVLEQEFIAAIKGSGLSGSKTPGRKGSLAALEAFCLGGDLFFEFGTS 280

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
               F         +I      K  P     L    D+   + +  N          +   
Sbjct: 281  KYSFEVWSSENLSDISN--YKKNQPLFTHPLLTEFDQLAALNNTINQGLAIAVVQHA--- 335

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            AK++ A   + K++  V+  +DL+ N +  L   +    +  KI Q     +IDE QDT 
Sbjct: 336  AKWVKAAVIKRKQEQSVITPDDLLSNLHSAL-NNEQGNVLAQKIAQLFPVAMIDEFQDTD 394

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             IQ+ +   + +             TL  +GD KQ+IY F GA+    +  K   QK+  
Sbjct: 395  PIQYGIFSKIYQ---------QEHTTLAMIGDPKQAIYGFRGADIFTYIGAKEAVQKQ-- 443

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                      L  +FRS++D+++ V+ +F   ++A     +        +++  +     
Sbjct: 444  ------QQFTLGTNFRSSSDVVSSVNSLFG--KHANSFIYNDAIPFNAVAAKGKKADESF 495

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI-GTDTIFSNGKK 368
            L +   +     C     +         +      LA   A  I  ++   +   +   +
Sbjct: 496  LIDGQPATAFEFCVFSDTAADEKNKPTGKAIGQQHLATFFANKIVTLLTQAEQGRACIGE 555

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            + + A DI +LVR R +  ++       K    I+ V   R  +        L+     +
Sbjct: 556  KPVSAADICILVRDRVEAQIMKKALSTAK----IASVYLSRESVFSQELSHHLLNFLTAL 611

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
              Q D+     +L  PLF  S ++I+ +           E   +      ++  H+    
Sbjct: 612  HGQYDESLLRGVLAGPLFCLSYNEIYALADD--------EAQWQEHLNFFAQLSHIWNKQ 663

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              +  + +  S +       G     +++++ F       L E L       + +   L+
Sbjct: 664  GAMAMLERLMSHNQLSAKWQGLGYNVERWLTDF-----RHLGEILQQKQIELEGTLRLLR 718

Query: 549  ELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
                ++ Q     ++    ++ N V+I+T+H +KGLE P+VF+                 
Sbjct: 719  WFAQKVSQQDGETVQVRLESDANLVKIVTMHASKGLEYPLVFMPFASGYR---------- 768

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                      +           +   D ++  ++    E  RLLYV +TRA     I  +
Sbjct: 769  -----ETKEALYHNNGALIYDLSKGDDALQKAEQERLAEDLRLLYVALTRAVHFCAIGMY 823

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK--DEWIAYEWSTHHPENTPLE 725
            +    +          + +  F   E        N +     E    ++     E+   +
Sbjct: 824  NIGQGQSSRLAIQSSALGHVLFAGLEITSSQIWRNHLADFCSEHTGMDYQQFTSEDLLAQ 883

Query: 726  REETIKQLMDE-------------QKIPKKLFSPIKNDINEPYILNPSTIDTK------- 765
               +     D              ++  +       +       L P   D         
Sbjct: 884  GTLSFNNSADAQQTLSINNVTANIERNWRATSFSALSFKKHIDHLAPGRSDEDHEKDEFA 943

Query: 766  -GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL------WPA 818
              +    S+ S  +    G  +H++ + I      +          +  K          
Sbjct: 944  VQEGEAPSVYSFPKGAKPGSCLHEIFEQIDFTSPIEHPVNKEHNLAEVIKRSLEKYHISE 1003

Query: 819  KEYKNLLLSITRLLENPM----------------------------MTTAMSCDSYSEVS 850
                     I  +L  P+                            ++     D   E+ 
Sbjct: 1004 HWQDITEQWILDVLACPLNDDSNANINTSGNDTSANSSSVNSNGLSLSQLAPSDCLVEME 1063

Query: 851  VSGK-----------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
             +                         +       ++ G ID I   Q   +I +YK+++
Sbjct: 1064 FNLPLKSLSAPQLNEILIKHFGFEHSKLEFSHVKGLLKGFIDLIFCHQGKYYILDYKSNY 1123

Query: 888  HVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK----SLVCLL---IYV 927
                  ++             +  Q  IY   L      +    S+   L    Y 
Sbjct: 1124 LGSNAADYEHDMLEQAMSSHQYHLQYLIYTVALHRLLKQRIADYSVETHLGGVYYT 1179


>gi|268680529|ref|YP_003304960.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618560|gb|ACZ12925.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
          Length = 907

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 123/839 (14%), Positives = 249/839 (29%), Gaps = 186/839 (22%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           E +     E  +        K          L    +       + N  L F+D+     
Sbjct: 250 ETVNALLHELKEALRIHCDAKEAYFLGELGKLFGVYDESLRRLMRANGELGFDDVTNLLY 309

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            LL++     ++ +++D  + H+LIDE QDTS++Q+E++  L E+   G+      +TLF
Sbjct: 310 TLLREEIHKDFLYFRLDGTVEHLLIDEFQDTSVVQYEILLPLIEEIRAGRGVKD-FKTLF 368

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD KQSIY F G   +     K              ++  L  ++RS+ +++  V+++
Sbjct: 369 FVGDVKQSIYRFRGGAKELFGYAKE---------SLHLAVDSLDTNYRSSPEVVAFVNEI 419

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
           F+                  ++++    G + +                       D   
Sbjct: 420 FTGKMK---------GYETQKAAKKEGEGYICV---------------------RIDECV 449

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +          +   I  ++             I+ KDI +LV   KD  +   L +   
Sbjct: 450 ES--------LVLEEIGRVLEKG----------IKPKDIALLVHTNKDAKVFKALIQEHF 491

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                 V       LT+  +IK +++L +++                             
Sbjct: 492 PSLH--VRLEATLKLTEVRSIKAMISLLKYLYF--------------------------- 522

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               +      +         +           ++       P     +++         
Sbjct: 523 ---GDEIYKASFCTLSGMSWGTPL--------SMVSCTMHQPPLVVVQMLIEHYGLYDGS 571

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                         FL    R E+     ++  +  LE+     K   S +   +R++TV
Sbjct: 572 QDWL---------RFLEVASRYEE-----IESFLFALERLSDEAK---SEDSEGLRVLTV 614

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE   V L D   +  +      +       +   + + +   +S ++      +
Sbjct: 615 HKSKGLEFEHVILCDKLGRDTTQSDT--LLFSYDAVNLQEVHLTMRGRESVDSGYEKAKE 672

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             +    E+    LYV  TRA   L +C  S+ S                          
Sbjct: 673 REQSLNFEDRLNALYVAFTRAKRSLCVCAKSDNS-------------------------- 706

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
                                 E+  L   E       E  +   L              
Sbjct: 707 --------------------VFESLNLTPLERGILSQTEASVAPSLKPLPLFFPKAYGTQ 746

Query: 758 NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
           N S ++ +   ++E           G+  H LL++     +   +    +   + A +  
Sbjct: 747 NISAVEDELNESVEVGS-----MTFGIAQHYLLEMWDGFEKESLERAYLALRNRFASVLD 801

Query: 818 AKEYKNLLLSITRLLENPMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
               + L      LL      +     +   E  +  +            +ID +     
Sbjct: 802 EGALQRLYQRAEHLLTCKDFLSLVQGANILKEQPLMYQKE--------RKQIDLLLEHPD 853

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            I + +YK+              H AQ+++Y++ L   Y    +   + Y+   +   +
Sbjct: 854 KIVVIDYKSSKKESA-------KHHAQVALYQEALSQIYTL-PVEGYICYL-GNEGVEL 903


>gi|315446057|ref|YP_004078936.1| DNA helicase/exodeoxyribonuclease V subunit beta [Mycobacterium sp.
            Spyr1]
 gi|315264360|gb|ADU01102.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium sp.
            Spyr1]
          Length = 1109

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 127/975 (13%), Positives = 247/975 (25%), Gaps = 155/975 (15%)

Query: 47   LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
                ++L  A  T    E    L                 Q+ ++     +  L+ +   
Sbjct: 127  QLVLRSLGVAGDTDSGVELVESLDDLVAEIVDDLYLAHFGQDRDEPLLTHESALRLAHAV 186

Query: 107  FIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                            + A++    AK + A  E  K+K  +L ++DL+    D L+  D
Sbjct: 187  VGYAHTELRPRDPAPGSDAAVRVEFAKAVCAELETRKRKLGILHYDDLLSRLADALEAPD 246

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
              A  R ++ +  + +++DE QDT  +QW+VI                  TL  +GD KQ
Sbjct: 247  SPA--RARMQRRWSIVMVDEFQDTDPVQWQVIDR----------AFRGHATLILIGDPKQ 294

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            +IY+F G +                 A        L  ++RS A ++  +  V    +  
Sbjct: 295  AIYAFRGGDI----------VTYLHAAATAGVQRTLGTNYRSDAPLVEGLQAVMRDAQLG 344

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                        HR  R+      +     +          +       D L       +
Sbjct: 345  DPRIVVRRVDAHHREHRLQGAPHNE--PFRLRVCTRDQFRVRTDRMIPIDVLRNHIPKDM 402

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A      I+ ++ +           +   DI V+V   +D             D  I  
Sbjct: 403  AAD-----IAALLNSGATH---CGEKLAPGDIAVIVESHRDGHACFAAL----ADAGIPA 450

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
            V      +    A  D M L                  +  F  + + +        + +
Sbjct: 451  VYTGDSDVFSSPAADDWMCLLEAFDQPHRSGLVRAAATTMFFGETAEALAL------QGD 504

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            ++ +               + + + +    A+       F        G +      G  
Sbjct: 505  SLTD--------------RIAETLRQWADFARERGVTAVFEAAQLRGMGARVLRWVDGER 550

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP---------TIKRAHSANHNEVRIM 575
             +  L                SL  L   L                 R   ++   V+IM
Sbjct: 551  HMTDLAHLTQLLHDTAHREQYSLPALRDWLRAQRDDRGGLRGTVERNRRLDSDAAAVQIM 610

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            TV  +KGL+ PVV+L               +   P  +D       +      +   + +
Sbjct: 611  TVWVSKGLQFPVVYLPF-AFNRNVQPRDVVVFHEPVTSDGAADIRCLHIGGESSPDFAAV 669

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------------SNTSNEKKSNQRT 680
             +  +     +  RL YV MTRA  Q++                        +     R 
Sbjct: 670  AQQARLEAAGDDVRLTYVAMTRAQSQVVAWWAPSRDELNGGLSRLLRGRAPGDPVVPDRC 729

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                + D+               + ++  IA       P            + +D     
Sbjct: 730  DPARIDDAEAMARLRAWDDEGGPVLEESIIAERVEVELPAPPDTLAVRHFHRRIDPLWRR 789

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD-----------------NQTFNRG 783
                  I+    E  + +   +        E    D                       G
Sbjct: 790  TSYSGLIRAAEQESGVGSEPEVVELDDEVAELRGPDTEPATPDVDMASPMAGLPMGAKFG 849

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------- 836
             ++H +L+               +    +           L  ++  + + P+       
Sbjct: 850  TLVHAVLETADPFAVDLAAELEAAVVEHSLWWPVDVPPAELAAALVPMHDTPLGPLAPGV 909

Query: 837  -MTTAMSCDSYSEVSVSGKINCPKK----------------------------------- 860
             +      D   E+     +    +                                   
Sbjct: 910  TLRDIGLRDRLREMEFEFPLAGGDRRDDTPDITLADVGRLLRAHLPADDPLAPYAARLTT 969

Query: 861  --------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                       ++G +D +        + +YKT+       E     +            
Sbjct: 970  GALAGQPLKGYLNGSLDAVLRVDGRYLVVDYKTNWLGDPAGELTAADYAPA----RLAEA 1025

Query: 913  DSYPNKSLVCLLIYV 927
              + +  L  LL  V
Sbjct: 1026 MLHSDYPLQALLYCV 1040


>gi|194367786|ref|YP_002030396.1| exodeoxyribonuclease V subunit beta [Stenotrophomonas maltophilia
            R551-3]
 gi|194350590|gb|ACF53713.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas maltophilia
            R551-3]
          Length = 1226

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 132/939 (14%), Positives = 258/939 (27%), Gaps = 127/939 (13%)

Query: 47   LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
                + L   ++     E  +      L       K    ++   ++P     L++    
Sbjct: 273  HPLGRQLLAWAERGDPRELLASERLPALLPDGLADKT--NKKFLDRTPS--SLLQEPLAR 328

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            ++ +    + +    +      L        +  K+   V  ++DLI      L+     
Sbjct: 329  YVALLAERDAWLRATALNFLHALRAEATQRLQALKRTRRVQTYDDLIDGVALALEGPQRL 388

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +  ++  +    L+DE QDT   QW +  ++  D    +        LF +GD KQ+I
Sbjct: 389  TLV-KQLRAQYRIALVDEFQDTDDRQWGIFHTVFGDSPEVREL-GLAPALFLIGDPKQAI 446

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F G +    L+ K+                 L  +FRS   +L  +  ++       G
Sbjct: 447  YGFRGGDIHTYLKAKQ----------VAQQAPVLDQNFRSRPAVLRALQALYDN----GG 492

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                    I+    R G V   + +++      +       S      S      A+  A
Sbjct: 493  EDAFLERDIQFEPVRPGGVRIDEDYQRDGHAATALTLRVLRSGGDKAMSADASRDAATQA 552

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A     ++      +  + R +Q  DI VLVR  ++  L+      +     I  V 
Sbjct: 553  C-VAAIHQILVEARAGNAVLRGRPVQPGDIAVLVRSHREATLVQRALAAV----GIPAVA 607

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
              +  L      +DL AL   +L   D+     +L + L             QR      
Sbjct: 608  AGKQSLFATSEARDLRALLLALLQPADEGRLRAVLATVLLG-----------QRASAIAA 656

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--------TLILGAKKGRQQFI 518
             E             +     +       Q   P              +L    G ++  
Sbjct: 657  MEREGDLQ-------REFQAQLLHWRERWQRGGPFAVIADVCAAQGERLLALIDGERRLT 709

Query: 519  SRFGNEVIDVLDEFLNFTLRNE---QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            +         L E L                LQ  ++  +Q          ++   V+I+
Sbjct: 710  NYLQ------LGELLQEASAQALGMHGLLDWLQGQMASADQDDEQQLLRLESDARRVQII 763

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL   G    +        +             +     ++      
Sbjct: 764  TLHKSKGLEYPLVFLPFVGIDGGAPNTASHCTVHVGGQR------QLHWKLDKDEAWEAA 817

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                ++  + E  RLLYVG+TRA   L I         K        D+     H D  +
Sbjct: 818  SNQREREQRAEDARLLYVGLTRAEHALWIAVGDLAGLGKTRLAPLLGDLQALRAHADVHI 877

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
               +   ++ +               T     +       +                   
Sbjct: 878  DDSEAPAALPQLAAEVEGDLPAVRALTRRVPHDWWVYSFTQLAHADAGVGNDIEAAATEL 937

Query: 756  ILNPSTIDTKGKTNLESLLSDNQ--------------TFNRGLIIHKLLQVIFT------ 795
                +      +  LE  L +                    G ++H+ ++ +        
Sbjct: 938  PAPAADEPAGPELPLEPALPEPTVAAEDSAPIDPRFMGSRFGNVLHEAMENVDFAAWGDW 997

Query: 796  ----LPEHKRKNFITSYC--TKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCD 844
                     +   +         A          L+  +   L  P+     + +    +
Sbjct: 998  QPGLQAPEGQAEVLRKALHDEGYADADLDDGVAVLVPLVGHTLTVPLPEGGALHSLGEGE 1057

Query: 845  SYSEVSVSGKINCPKKDIIIS-------------------------GRIDQISISQQNIF 879
              +E+     I       ++                          G ID   +     +
Sbjct: 1058 RRAEIDFHFAIEPTTVPALLQVLHAHGVSSTRRGFGQRRRLEGLMTGMIDLTYVRDGRWY 1117

Query: 880  IFEYKTHHHVPQEIEHIP-----YTHIAQLSIYEKILKD 913
            + +YK++       + +        +  Q  IY   L  
Sbjct: 1118 VLDYKSNRLPGYSPDLLAIAMRHSEYDLQALIYTVALHR 1156


>gi|120402221|ref|YP_952050.1| exodeoxyribonuclease V subunit beta [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955039|gb|ABM12044.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
           vanbaalenii PYR-1]
          Length = 1097

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 131/978 (13%), Positives = 269/978 (27%), Gaps = 168/978 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT----ILKKAQTLQQASQTQCIE 63
           + NE    +          +   +   ++        T         ++L  A  T    
Sbjct: 84  ADNEIVAHLLTGSHGELTERRQRLRDALAGFDAATIATTHQFCQLVLRSLGVAGDTDSGV 143

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           E    L                 Q+ ++      + L  +++                 +
Sbjct: 144 ELVESLDDLVTEIVDDLYLAHFGQDHDEPLLTYADALSLAREVVGNAHTELRPTDPPPGS 203

Query: 124 LASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              +    A+ + A  E  K++  +L ++DL+      L+ +D  A  R ++    + ++
Sbjct: 204 DPFVRVQFARAVCAELETRKRRLGILHYDDLLSRLAKALEPQDSPA--RMRMQHRWSIVM 261

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT  +QW+VI              S   T+  +GD KQ+IY+F G +        
Sbjct: 262 VDEFQDTDPVQWQVIDC----------AFSGHATVILIGDPKQAIYAFRGGDI------- 304

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                             L  ++RS   ++  +  V    +              HR  R
Sbjct: 305 ---VTYLHAVSTADRQKTLGTNYRSDGPLVDSLQAVMRDAQLGDPRIVAHRVEAHHRDHR 361

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           +        +   V   D          T     +  +     + + +A  I+ ++ +D 
Sbjct: 362 LAGAPRNAPFRLRVVTRDQ-------FGTRPDRVVAIDQLRRHIPQDMAADIAALLASDA 414

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            F +   R +Q  D+ V+V   +D                I  V      +    A  D 
Sbjct: 415 TFCD---RPVQPGDVAVIVESHRDGHACFDALTA----AGIPAVYTGDSDVFTSPAADDW 467

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           M L                  +  F  + + +        E +T+ +             
Sbjct: 468 MCLLEAFDQPHRSGLVRAAATTMFFGETAESLA------AEGDTLTD------------- 508

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
             V + + +    A+       F        G +      G   +  L            
Sbjct: 509 -RVAETLRQWADFARDRGVAAVFEAAQLGGMGERVLSWVDGERHMTDLAHLTQVLHGTAH 567

Query: 542 NSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             + SL  L   L          P   R   ++   V+IMTV  +KGL+ PVV+L     
Sbjct: 568 REHFSLPALRDWLRGQRDERSGAPERNRRLDSDAAAVQIMTVWVSKGLQFPVVYLPFA-- 625

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                   + +     +    G    +     R+   +   +  ++    +  RL YV M
Sbjct: 626 ------FNRNIQTRDVVTFHDGDIRCLHIGGERSPDHAAAQQQGRREAAGDDVRLTYVAM 679

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA  Q++    +  +            ++      D  V        I+  + +A   +
Sbjct: 680 TRAQSQVV----AWWAPSNDEPNGGLSRLLRGRAPGDPVVPDRCDPPRIDDPDAMAQLRA 735

Query: 716 THHPENTPLEREETIKQLMDEQKIPKK---LFSPIKNDINEPYILNPSTI---------- 762
                   LE       +  E   P +   +    +         + S +          
Sbjct: 736 WSDAGGPVLEESVIAASVTVELPSPAEDLDVRHFHRRIDTSWRRTSYSGLIRAAESEQTG 795

Query: 763 -----------DTKGKTNLE-----------SLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                      D  G+  +             +         G ++H +L+         
Sbjct: 796 VGSEPEVVELDDEAGEVPVPGAGGGGDQMPSPMADLPMGAKFGTLVHAVLETADPFA-TD 854

Query: 801 RKNFITSYCTKNAKLWP-AKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSV 851
               + S+  +++  WP      +L  ++  L + P+        +      D   E+  
Sbjct: 855 LAAELESHVRRHSLWWPVDVPAADLAAALVPLHDTPLGPLAPGVTLRDIGLRDRLREMEF 914

Query: 852 SGKINCPKKDI-------------------------------------------IISGRI 868
              +    + +                                            ++G +
Sbjct: 915 EFPLAGGDRRVEVPDISLADVGRLLAAHLPADDPLAPYAERLTGGTLAAQSLKGYLNGSV 974

Query: 869 DQISISQQNIFIFEYKTH 886
           D +        + +YKT+
Sbjct: 975 DAVLRVGDRYLVVDYKTN 992


>gi|254188292|ref|ZP_04894803.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            Pasteur 52237]
 gi|254260700|ref|ZP_04951754.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            1710a]
 gi|157935971|gb|EDO91641.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            Pasteur 52237]
 gi|254219389|gb|EET08773.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            1710a]
          Length = 1270

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 129/1012 (12%), Positives = 283/1012 (27%), Gaps = 156/1012 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452  RYTLAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317  QHDSQCNPQQESWTSYF--DSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                        WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504  TDPLAGAGDFRIWTLPVGDDVLTKRDAQRHAAHACAAEIARLMRGAREHAVTLGGEPLAA 563

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
              I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564  SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--------- 484
                   L S  F      ++++     E + +       +  G                
Sbjct: 620  LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAAGGASGNGGGARAASAGAPAPSPA 679

Query: 485  -------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFL 533
                   ++       + +       +  + G  +  ++ ++    E      + L E  
Sbjct: 680  DADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELT 739

Query: 534  NFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  +     +L+ L +   E      +    ++ N V+I+TVH +KGLE  +VF   
Sbjct: 740  QARASAQPGIAPTLRWLAAQRREGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPF 799

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                         +      +D+ G  +        +       +   +    E  RL+Y
Sbjct: 800  LNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVY 857

Query: 653  VGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            V +TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++   + W 
Sbjct: 858  VALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQ 917

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----- 765
            A           P+           + +  +      +   +   I + S++ +      
Sbjct: 918  ALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDE 977

Query: 766  --------------------------------------------GKTNLESLLSDNQTFN 781
                                                         +   + +L+  +   
Sbjct: 978  SGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAGDDILAFPRGAA 1037

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
             G  +H+LL++                  +          + L   +TRL+ +       
Sbjct: 1038 AGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELV 1097

Query: 836  ---MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQ 870
                +         +E+           + +                      + G ID 
Sbjct: 1098 PGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDM 1157

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1158 IVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1209


>gi|187935725|ref|YP_001887064.1| ATP-dependent helicase [Clostridium botulinum B str. Eklund 17B]
 gi|187723878|gb|ACD25099.1| helicase, UvrD/REP family [Clostridium botulinum B str. Eklund 17B]
          Length = 668

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 104/611 (17%), Positives = 199/611 (32%), Gaps = 112/611 (18%)

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
             +    +I + + K   D+ E   K     I +               S  + +     
Sbjct: 102 DGSIVNKLINKVLTKYFDDINEDKIKEVLNNISLYKTSRIRLGDFKPSVSREIFEDALEC 161

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YE  KK++  +DF+DL I   +LL+  + +        +   +IL+DE QD   +Q E +
Sbjct: 162 YEHYKKEHGKIDFDDLAIEALELLESNEKA---LIYYRKLFKYILVDEFQDCDELQIEFL 218

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + +               +LFAVGDE Q IYSF G++P  ++    +         +   
Sbjct: 219 KLI---------NDGEDNSLFAVGDEDQCIYSFRGSKPMYMVTFDNMF--------KDSK 261

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L +++RS  +I+    K+    +        S                         
Sbjct: 262 KHYLSINYRSKDNIVERSKKLIKFNKERNNKEILS------------------------- 296

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              ++ +     + + ++   Q     ILA  +                 KK  I  ++ 
Sbjct: 297 ---NKKDDGIIKFYTPYNEKAQGD---ILANLVKNE--------------KKYNINYEEN 336

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDL 435
            +L R   +   I            I     DR     +H   KDL+A  + +++  D  
Sbjct: 337 AILYRTNMEAMSIIDAF----TKNHIPFRLLDRQYNFFEHFICKDLIAYLKLVVNPFDKE 392

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ +I  +     +       I K         +  +  + +  +  
Sbjct: 393 SFIKIINKPFRYISKHNIDYVRNYTIQENLFNILINKEDTPPFQ--RKNLDELKKDFNYL 450

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISE 553
              S       I+   +    ++  +  +    L++              + ++ + ++ 
Sbjct: 451 NKISLGSAIAYIVMDLEYID-YLKSYCEKFSQNLEDLEEVIEEFKLSAEGFKNIFDFLAH 509

Query: 554 LEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           +E     I+ + + N    V + T+H  KG+E   V+LV+       H            
Sbjct: 510 IENVSNEIEESKNKNQREGVILSTIHGVKGMEFKNVYLVNCNEDTIPHSSS--------- 560

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                      K+   EE  RL YVG+TRA D L +    N   
Sbjct: 561 ---------------------------KEENIEEERRLFYVGITRAIDNLYLFAPKNRRG 593

Query: 673 EKKSNQRTWYD 683
           + K   R   +
Sbjct: 594 QLKDISRFICE 604


>gi|254510778|ref|ZP_05122845.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
 gi|221534489|gb|EEE37477.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
          Length = 910

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 108/853 (12%), Positives = 238/853 (27%), Gaps = 125/853 (14%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
               L    ++  +  +     ++  S    ++ +      Y+    +   LDF  + + 
Sbjct: 99  FAGALMTWLNKISE--EGITAEQLLASDTPEMSASGEAYQTYQRLLSEYNYLDFSTIQVE 156

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              LL   D    +  +I    ++++IDE QDT+ IQ +++  L E            R 
Sbjct: 157 MLRLLDNPD----VCKQIQGRFDYLMIDEYQDTNTIQEKIVLKLAE----------GHRN 202

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ Q++Y F GA  + +L               +   + L  ++RS   I+   +
Sbjct: 203 LCVVGDDDQALYRFRGASIRNILEFPTRFPA------GECKQVRLTKNYRSEPPIIDFYN 256

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           +     + A                        +  +        +      +       
Sbjct: 257 RWMKTTDWA------------------------EDDKSFRFDKTIEPASGTATAHPSVFK 292

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +  +  A   A      + ++     I             +  L R  ++  ++      
Sbjct: 293 VAGDDRADNWADETLVFLQSLRSQGIIKD--------WNQVAFLFRSVRNPKVV--AFAN 342

Query: 396 LKNDYKISVVGNDRFILTDHLAIK-DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 I +      +  +   ++  + AL                +   ++ F +  + 
Sbjct: 343 DLEAAGIPIYAPRSNMFFERTEVRLMIGALLFLFPQYGSIRQTREGMNLQVWAFYDACLA 402

Query: 455 K-ICTQRHETETVYEYIQKFANCGISKFQHVIK--YIHELIHIAQFCSPHDFFTLILGAK 511
           + I   +   +   +                    +      + QF +   F    +   
Sbjct: 403 EFINHLKSGDDPQIKAWAAGKAKNHLSLSENTNYPFSGLFYDLMQFPTFSRFLDEGIAHS 462

Query: 512 KGRQQFISRFGNEVIDVLDE---FLNFT----LRNEQNSYSSLQELISELEQYPPTIKRA 564
             R    +R  +++  +L++     N       R E++           L          
Sbjct: 463 GVRDSRPARNLSKLSRLLNKYEYLYNVIVIRPDRLERDILGLFNFFFRFLWDGGIEEYED 522

Query: 565 HSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
            S       V  MT+H +KGLE P+V +          K    M +M         P   
Sbjct: 523 ESEYAPSGCVSFMTIHQSKGLEFPIVIVGSLD--AVPRKQYTDMEVMLEQEFGGREPFEP 580

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                  +                  RL Y   +RA + L++    NT + +        
Sbjct: 581 MDRIKTFDFW----------------RLFYTAFSRAQNMLVLTCQENTPSGRGQRHVPSA 624

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                              ++I+  E    +                  +          
Sbjct: 625 YFRPVYDALKPWRDLTFDPHTIDLAEVKEVDI-----------------KQSYSFTSDVL 667

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
           +F            LN + +                    G ++H+ ++ I        +
Sbjct: 668 VFEGCPQQYRLLKDLNFAPV-------------RTNAILFGTLVHQTIEDIHKAVLRGEE 714

Query: 803 -----NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--MTTAMSCDSYSEVSVSGKI 855
                + ITS+   N      KE   L   + ++ +  +           +       ++
Sbjct: 715 TKVTTDQITSWFDLNYANLTKKERVYLAEPVLKIAKRHVTSYVDRERAHWHRLRDAEVEL 774

Query: 856 NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDS 914
           +  K+D I++G +D +     +  I ++K+       +       +  QL IY  +L++ 
Sbjct: 775 SLLKEDYILTGTVDLVQTDDGSYEIIDFKSEKKPDLIDEADRLSRYRRQLQIYAHLLEEK 834

Query: 915 YPNKSLVCLLIYV 927
              +     L Y 
Sbjct: 835 REVEVSRMTLYYT 847


>gi|85859568|ref|YP_461770.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
 gi|85722659|gb|ABC77602.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
          Length = 968

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 133/952 (13%), Positives = 249/952 (26%), Gaps = 158/952 (16%)

Query: 3   NRFGLSLNESYELIYK-----DLWPLPYFQVSDINKYVSLSMETGN---PTILKKAQTLQ 54
               L  +     + K     + W  P   +  +    S  +   +     +   A+  +
Sbjct: 155 RILHLQPDSLIAELDKGRESLEAWDCPERLLDALKGEQSRLVAEYDQLRAKVQVVAEATR 214

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ--EINKKSPDLKEKLKKSQDEFIKIRD 112
            A ++Q        L+   L +    + N+         ++      L+        +  
Sbjct: 215 GALRSQVAAPLLEPLAGVDLKRALFLKDNLADVRVAAADRATPAYAALEDLYPRMRVLIS 274

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                     +               E K+K   L F+D+       L   D      + 
Sbjct: 275 EHLINTKRLRSALLKRFIALRADVIAEEKEKLGRLFFDDVPRK-LIALDGPDSPDRPLFA 333

Query: 173 ID------QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH-SSPRTLFAVGDEKQS 225
                       H+L+DE QDTS IQ+ ++R L ED      ++    R++F VGD KQS
Sbjct: 334 ARLYEMGFHRTAHLLLDEFQDTSQIQFTLLRPLIEDILGSVGSNAEGDRSIFLVGDWKQS 393

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY + GA P      +        +         LP ++RST  ++   + + +      
Sbjct: 394 IYQWRGAAPDM---LRASLTPALASGQIAAET--LPYNYRSTPLLIEFFNHLVADLFAGT 448

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                     + +    G +  V +        D                          
Sbjct: 449 DKVNMQAPPEKPK-HPYGGISEVAVIPVACGAGDEPVYE--------------------- 486

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
                     +I           R     DI VL R  +                 I   
Sbjct: 487 ---------RLIEAIVKKKAECGRP--WGDIAVLCRTNRHM----DRAAAALARAGIPTS 531

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
           G     +        L      + +  D       LKS  +             +  T  
Sbjct: 532 GIRGREMLSLREGTALYLSLIALFTAHDGRFIPRALKSLDYG----------EAQGATLM 581

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
                         +      +   L  +A                   +  I    +E 
Sbjct: 582 SAVAQLAETVGNAPRPHRFAAFASALRDLAPHFP---------------RILIETLWDEA 626

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
                          +         +  L      I      + + V++ T+H  KGLE 
Sbjct: 627 ERY----------FVRPDAVDAAAFLRYLLTMSHLITIPEGEHADRVKLATIHGTKGLEF 676

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           P VFL        + +        P       +             +++ +  +K+   E
Sbjct: 677 PHVFLFWKEEHDRAPEIPHPEDGCPLSLSKDELAFLATDPIEGAAAIAEAVTVVKEERAE 736

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E   ++YV  TRA+  L I   ++     K      +     +   +      +      
Sbjct: 737 ETANIIYVAATRAAKSLTILLRADREGALKGYSERMF-----TTAQEPIADAERTEFGWR 791

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
            D  +       H +    +  +      D  ++   L S                    
Sbjct: 792 HDYGLEKPRPADHEDLIEPDLGDLPAVPADSDEMDAALRSAAI----------------- 834

Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                           RGL IH +L  +       R+           +           
Sbjct: 835 -----------EAGIERGLRIHAILARL----TCDRQTIAPDSLAAEEQAV--------- 870

Query: 826 LSITRLLENPMMTT-AMSCD-SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
             + R L    +            E  +S        D    G +D++ I+   I + ++
Sbjct: 871 --VERFLHEEKVREILFRPGKVLVEQHIS--------DTRTFGIVDRLIIAPDRITLIDF 920

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
           KT         H+   +  Q+  Y  IL+  +  + + C L++V EP+  +I
Sbjct: 921 KTGRVG-----HLADKYRPQMLRYRMILQGLFAGRPVECYLLFVDEPQRIVI 967


>gi|251778107|ref|ZP_04821027.1| helicase, UvrD/REP family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082422|gb|EES48312.1| helicase, UvrD/REP family [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 668

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 106/611 (17%), Positives = 201/611 (32%), Gaps = 112/611 (18%)

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
             +    +I + + K   D+ E   K     I I               S  + +     
Sbjct: 102 DGSIINKLIKKVLTKYFDDINEDKIKEVLNNISIYKTSRIKLYEFRPSISREIFEEALEC 161

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YE  KK+N  +DF+DL I   DLL+  + +        +   +IL+DE QD   +Q E +
Sbjct: 162 YEHYKKENGKMDFDDLAIEALDLLESNEKA---LIYYRKLFKYILVDEFQDCDELQIEFL 218

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + +               +LFAVGDE Q IYSF G++P  ++   ++         +   
Sbjct: 219 KLI---------NDGEDNSLFAVGDEDQCIYSFRGSKPMYMVTFDKMF--------KDSK 261

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L +++RS  +I+    K+    +        S                         
Sbjct: 262 KHYLSINYRSKDNIVEKSKKLIKFNKERNNKEILS------------------------- 296

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              ++ +     + + ++   Q     ILA  +                 KK  I  ++ 
Sbjct: 297 ---NKKDDGIIKFYTPYNEKSQGD---ILANLVKNE--------------KKYNINYEEN 336

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDL 435
            +L R   +   +            I     DR     +H   KDL+A  + +++  D  
Sbjct: 337 AILYRTNMEAMSVIDAF----TKNHIPFRLLDRQYNFFEHFICKDLIAYLKLVVNPFDKE 392

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ +I  +     +       I K         +  +  + +  +  
Sbjct: 393 SFIKIINKPFRYISKHNIDYVRNYTIQENLFNILINKEDTPPFQ--RKNLDELKKDFNYL 450

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISE 553
              S     + I+   +    ++  +  +    L++              + ++ + ++ 
Sbjct: 451 NKISLGSAISYIVMDLEYID-YLKSYCEKFSQNLEDLEEVIEEFKLSAEGFKNIFDFLAH 509

Query: 554 LEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           +E     I+ + + N    V + T+H  KG+E   V+LV+       H            
Sbjct: 510 IENVSNEIEVSKNKNQREGVILSTIHGVKGMEFKNVYLVNCNEDTIPHSSS--------- 560

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                      K+   EE  RL YVG+TRA D L +    N   
Sbjct: 561 ---------------------------KEENIEEERRLFYVGITRAIDNLYLFAPKNRRG 593

Query: 673 EKKSNQRTWYD 683
           + K   R   +
Sbjct: 594 QLKEISRFICE 604


>gi|51246731|ref|YP_066615.1| ATP-dependent DNA helicase UvrD [Desulfotalea psychrophila LSv54]
 gi|50877768|emb|CAG37608.1| Probable ATP-dependent DNA helicase, UvrD/REP family [Desulfotalea
           psychrophila LSv54]
          Length = 733

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 102/540 (18%), Positives = 176/540 (32%), Gaps = 115/540 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L  HY   K+ N ++D++DL++N   LL++      +R  +     ++++DE QDT+LI
Sbjct: 189 RLGRHYHTFKRDNVLMDYDDLLVNWKLLLQESPE---VRSMMSHRFRYVMVDEYQDTNLI 245

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q ++IR L  +             +  VGD+ QSIYSF GA+   ++R  +         
Sbjct: 246 QADIIRLLASE----------HSNVMVVGDDSQSIYSFRGADFYNIMRFPKEFP------ 289

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I+L  ++RST  IL++ + + +        S  S      R    G        
Sbjct: 290 --GAKLIKLEENYRSTQPILSLTNDLIANASEKYTKSLHSNIKGEQRPIVYGARD----- 342

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                             A  I   +   I             I
Sbjct: 343 ------------------------------EQAEATFILARVQQHIRDG----------I 362

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I VL R    +  +            I         LT+   +KD+++  R +++ 
Sbjct: 363 DPSEIAVLFRSGFHSYKLEIGLGA----AGIEFEKRGGLKLTEAAHMKDVLSFLRLLVNP 418

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ--RHETETVYEYIQKFANCGISKFQHVIKYIH 489
            D+LS+  +L   L         KI T         +       +   +     +     
Sbjct: 419 RDNLSWNRVLLQ-LDRIGPKTAQKITTTIVPTFDPFLSLKNYPASKASVDIIAGLADLFR 477

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
           EL       +P   + L+L       ++  S    +    L+ F       +      LQ
Sbjct: 478 ELR--VTERTPAALYELVLNYYTPLFERLYSDDYPKREKDLEHFKGVIAGYD-----DLQ 530

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           + I +    PP      + +   + + T+H++KGLE   VF++      F H +      
Sbjct: 531 KFIDDTTLDPPAPTADKTPDGKRMVLSTIHSSKGLEFDAVFVMGLAEGRFPHANTVGFGP 590

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                               EE  RLLYV  TRA   L +    
Sbjct: 591 ----------------------------------QWEEERRLLYVAATRARKHLYLTYPR 616


>gi|145225706|ref|YP_001136384.1| exodeoxyribonuclease V, beta subunit [Mycobacterium gilvum PYR-GCK]
 gi|145218192|gb|ABP47596.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium
            gilvum PYR-GCK]
          Length = 1109

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 129/975 (13%), Positives = 253/975 (25%), Gaps = 155/975 (15%)

Query: 47   LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
                ++L  A  T    E    L                 Q+ ++     +  L+ +   
Sbjct: 127  QLVLRSLGVAGDTDSGVELVESLDDLVAEIVDDLYLAHFGQDRDEPLLTHESALRLAHAV 186

Query: 107  FIKIRDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                            + A++    AK + A  E  K+K  +L ++DL+    D L+  D
Sbjct: 187  VGNAHTELRPRDPAPGSDAAVRVEFAKAVCAELETRKRKLGILHYDDLLSRLADALEAPD 246

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
              A  R ++ +  + +++DE QDT  +QW+VI                  TL  +GD KQ
Sbjct: 247  SPA--RARMQRRWSIVMVDEFQDTDPVQWQVIDR----------AFRGHATLILIGDPKQ 294

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            +IY+F G +                 A        L  ++RS A ++  +  V    +  
Sbjct: 295  AIYAFRGGDI----------VTYLHAAATAGVQRTLGTNYRSDAPLVEGLQAVMRDAQLG 344

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                        HR  R+      + +   V   D                +P +   + 
Sbjct: 345  DPRIVVRRVDAHHREHRLQGAPHNEPFRLRVCTRDQ-------FRVRPDRMIPIDVLRNH 397

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            + + +A  I+ ++ +           +    I V+V   +D             D  I  
Sbjct: 398  IPKDMAADIAALLNSGATH---CGEKLAPGHIAVIVESHRDGHACFAAL----ADAGIPA 450

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
            V      +    A  D M L                  +  F  + + +        + +
Sbjct: 451  VYTGDSDVFSSPAADDWMCLLEAFDQPHRSGLVRAAATTMFFGETAEALAL------QGD 504

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            ++ +               + + + +    A+       F        G +      G  
Sbjct: 505  SLTD--------------RIAETLRQWADFARERGVAAVFEAAQLRGMGARVLRWVDGER 550

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP---------TIKRAHSANHNEVRIM 575
             +  L                SL  L   L                 R   ++   V+IM
Sbjct: 551  HMTDLAHLTQLLHDTAHREQYSLPALRDWLRAQRDDRGGLRGTVERNRRLDSDAAAVQIM 610

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            TV  +KGL+ PVV+L               +   P+ +D  G    +      +   + +
Sbjct: 611  TVWVSKGLQFPVVYLPF-AFNRNVQPRDVVVFHEPATSDGAGDIRCLHIGGESSPDFAAV 669

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---------------SNTSNEKKSNQRT 680
             +  +     +  RL YV MTRA  Q++                        +     R 
Sbjct: 670  AQQARLEAAGDDVRLTYVAMTRAQSQVVAWWAPSRDELNGGLSRLLRGRAPGDPVVPDRC 729

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                + D+               + ++  IA       P            + +D     
Sbjct: 730  DPARIDDAEAMARLRAWADEGGPVLEESIIAERVEVELPAPPDTLAVRHFHRRIDPLWRR 789

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD-----------------NQTFNRG 783
                  I+    E  + +   +        E    D                       G
Sbjct: 790  TSYSGLIRAAEQESGVGSEPEVVELDDEVAELRAPDTEPATPDVDMASPMAGLPMGAKFG 849

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------- 836
             ++H +L+               +    +           L  ++  L + P+       
Sbjct: 850  TLVHAVLETADPFAVDLAAELEAAVVEHSLWWPVDVPPAELAAALVPLHDTPLGPLAPGV 909

Query: 837  -MTTAMSCDSYSEVSVSGKINCPKK----------------------------------- 860
             +      D   E+     +    +                                   
Sbjct: 910  TLRDIGLRDRLREMEFEFPLAGGDRRDDTPDITLADVGRLLRAHLPADDPLAPYAARLTT 969

Query: 861  --------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                       ++G +D +        + +YKT+       E     +            
Sbjct: 970  GALAGQPLKGYLNGSLDAVLRVDGRYLVVDYKTNWLGDPAGELTAADYAPA----RLAEA 1025

Query: 913  DSYPNKSLVCLLIYV 927
              + +  L  LL  V
Sbjct: 1026 MLHSDYPLQALLYCV 1040


>gi|172060153|ref|YP_001807805.1| exodeoxyribonuclease V subunit beta [Burkholderia ambifaria MC40-6]
 gi|171992670|gb|ACB63589.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MC40-6]
          Length = 1234

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 124/985 (12%), Positives = 267/985 (27%), Gaps = 131/985 (13%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             LW      +  + +    ++   +      A  L   S      +  + L    L    
Sbjct: 240  RLWADERDAIDALLRTAQPALNQRSHKPDALADALAAWSAHFAQGDAAAALPKAALKLTR 299

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T       +          +     +              +        T    L     
Sbjct: 300  TALAKATKKGGVTPEHAFFDVADALEAAVAAAEATQRARWLALIADWLDTAPGELAER-- 357

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 358  --KRTRRVVSFDDLLANLYHALHAHP---WLAETLRARYPAALIDEFQDTDPLQFAIFNR 412

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 413  IFA----------PGGPLFLVGDPKQAIYSFRAADLHTYLAARA----------SASACY 452

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L ++ RST  I+   ++ F     A  L       +R           V+      +  
Sbjct: 453  TLAVNQRSTPAIVDACNRFFMSNPRAFVLDGLDYYAVR-------AGTRVRAPFVDATDP 505

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDIL 377
                + +  S      +L +  + +  A+  A  I+ ++              +   DI 
Sbjct: 506  GPAGDFRIWSLPGGDGTLLKRDAQAQAAQACAAEIARLMRGAREGHARLGDTPLSPGDIA 565

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VLV+  +   L+  +       + I  V   +  +      + L  +   I +  D    
Sbjct: 566  VLVQTHRQGSLVKRVLAT----WGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLRRL 621

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHE--TETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
               L +  F      ++++     +   E              S+++ + +     +   
Sbjct: 622  RSALAADWFGLDAGALWRMEQGDGDASREAADSADAMSWVERFSRYRLLWRERGFAVMWR 681

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-EL 554
             F         ++    G ++            L E        +     +L+ L +  L
Sbjct: 682  TFTRELRIAERLMAGADGERRVTDIN------HLAELTQARASAQPGIAPTLRWLAAQRL 735

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +      +    ++ N V+I+TVH +KGLE  VVF                +      +D
Sbjct: 736  DGGGEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPASGLPDAREYHD 795

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSN 672
            D G  +        +       +   +    E  RL+YV +TRA  +  +    + ++ +
Sbjct: 796  DAGDAVLHYGC--DDEAAEHAARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRS 853

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +++ +     +V  +  + +         ++    W A           P+        
Sbjct: 854  TREARRSVLNWLVAGAGQSFDAWLDEPPDEAVLDSAWQALAGGPVSVAPLPVPARRERLA 913

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------------------------- 764
               +           +   +   + + S++ +                            
Sbjct: 914  AGHDATQTLAARHATRVLRDAWRMASFSSLTSSMAREEAGVAVVPDDELRPDHDALAAVA 973

Query: 765  -----------KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                         +   + +L   +    G  +H+L ++                     
Sbjct: 974  PDGAFVAADTVASEPPDDDILRFPRGAAAGECLHRLFELSRFTEPDSWYQAALGALHDRP 1033

Query: 814  KLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII- 863
                 +    L   + RL+++           +          E+         +   + 
Sbjct: 1034 VEAEPELATRLPAMMARLVDDVVRTELVPGMRLADLDPTRRLDEMGFLFPAPSLELGALR 1093

Query: 864  ---------------------ISGRIDQISISQQNIFIFEYKTHH---------HVPQEI 893
                                 I G ID I       +I ++K++H             ++
Sbjct: 1094 RLLVAHGYPDVALDSGMLAGFIKGFIDMILEHDGRFWIVDWKSNHLGNTPDAYGPRALDV 1153

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNK 918
                + +  Q  +Y   L      +
Sbjct: 1154 AMSDHAYHLQALLYTVALHRYLRGR 1178


>gi|110799163|ref|YP_695861.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           ATCC 13124]
 gi|110673810|gb|ABG82797.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           ATCC 13124]
          Length = 664

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 99/556 (17%), Positives = 178/556 (32%), Gaps = 117/556 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +       YE  K +  +LDF+DL I    LLK+      I       I +IL+DE Q
Sbjct: 149 YDIFNKCYEAYETFKNERGLLDFDDLQIKAVTLLKENPH---ILGYYRNLIKYILVDEFQ 205

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D   +Q E +R +                +F VGDE QSIYSF GA PK ++  +   + 
Sbjct: 206 DCDEVQLEFLRLI-------------NNEVFCVGDEDQSIYSFRGATPKCMINFEENFE- 251

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RS  +I+ V   V    +        +              G
Sbjct: 252 -------GSEKVYLKYNYRSLKNIVEVSKDVIKHNKERYQKEIIAFN---------ENQG 295

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++L +      +                          A  IA  I             
Sbjct: 296 KIELKKPFNESEE--------------------------ANIIALKIEESKRLGN----- 324

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALG 425
                +  D  +L R   ++              KI     D+     +H   +DL+A  
Sbjct: 325 -----KYSDTAILYRTNMESRSFIDAF----IRKKIPFKLLDKEYNFFNHFICRDLIAYL 375

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  +   +   F  ++  P    S+  I+ +   + + E V++ +         + +   
Sbjct: 376 RLSIDPFNKEDFNKIINKPFRYVSKSAIYGVMNSKKK-ENVFDILMNVEGVHPFQMRKF- 433

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--S 543
           + +   I      S +     IL   +   Q+I  + ++     ++ L+     + +   
Sbjct: 434 EELKSDIAYLNKLSLNSAIDFILSDLEY-SQYIREYSSKFKQNQEDLLDIVEEFKSSAME 492

Query: 544 YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + S+   +S +E             N + V + T+H  KG++   V +V+   +   HK+
Sbjct: 493 FKSIITFLSHIESVEENLENLNSKGNIDSVILSTMHGVKGMQFNDVHIVNIVDETIPHKN 552

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YVG+TRA + L
Sbjct: 553 S-------------------------------------MENLEEERRLFYVGITRAINNL 575

Query: 663 IICKHSNTSNEKKSNQ 678
            +    +   + K   
Sbjct: 576 YLYAPKSVRGKFKEPS 591


>gi|170730900|ref|YP_001776333.1| exodeoxyribonuclease V subunit beta [Xylella fastidiosa M12]
 gi|167965693|gb|ACA12703.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa M12]
          Length = 1242

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 139/983 (14%), Positives = 284/983 (28%), Gaps = 129/983 (13%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             + +  +    L  L   + + +   +  ++E G     KK+      +      ER+SL
Sbjct: 252  PDAALAVAETTLRHLWQTEGAALRSALHTALEEGVLN--KKSYKADALNDLWDWMERWSL 309

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEK-------LKKSQDEFIKIRDRFNTYKMFK 121
              + +   +  P+   +T    +   + +         + ++   ++       T +   
Sbjct: 310  APNAYP--EPHPKLQTLTVAALQAGTNKQGAGRSPNSPVSEAVQHYLDALTSIETARAQH 367

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                   L           K++  V  ++DLI      L      A +R  + Q+    L
Sbjct: 368  RLRRLHRLRAAARLRLTALKRQRRVQTYDDLIQRVAQALDGPHRLALVRS-LRQQYRMAL 426

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT + QW +   +  D         +   LF +GD KQ+IY F G +    L   
Sbjct: 427  VDEFQDTDVAQWRIFHHVFGDTEHAHTADLT-PALFLIGDPKQAIYGFRGGDVHTYLA-- 483

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSS 300
                     A +      L  +FRS   +L  ++ +++   +A  L+   +   ++  + 
Sbjct: 484  --------AAARAERAPPLERNFRSRPLLLRAIEALYTQAGDAAFLTPGIAFHPVQPGTH 535

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI-GT 359
                  +         Q      P   +          +++ ++      + I   +   
Sbjct: 536  CRDTDLSNAGVPAPALQVWQAPPPLDSTAKGKPKPWNADAARALCTDACVHAIHQWLADA 595

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             T  +    R + A DI VLVR  ++  L+            I  V   +  L       
Sbjct: 596  QTGRALLDGRPVGAGDIAVLVRSHREATLMQQAL----ARAGIPAVAAGKRSLLTTDEAN 651

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            + +AL   +L   D+      L + L   + + I               + Q+ A     
Sbjct: 652  EALALLLALLHSADEGRLRTALSTVLVGLTAETIATF----DHDSVASRHWQRQALHWRE 707

Query: 480  KFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            +      +  + +L  +            +L    G ++  +         L E L    
Sbjct: 708  RLHSGGPLGLLTDLCALH--------AARLLSLFDGERRLSNYLQ------LGELLQQV- 752

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAH-------SANHNEVRIMTVHTAKGLESPVVFL 590
                     L  L+  L +     K           ++   V+I+T+H +KGLE P+VFL
Sbjct: 753  ---HLRALGLHGLVDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLVFL 809

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                         +   +  +            Q+              K+  + E  RL
Sbjct: 810  PYVAIGRSHAGPGRYCVVHDAQQGRCLHWCLDKQA----PEWQRAETAWKQEQRAEEARL 865

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYVG+TRA   L I      +      + T    +            I    ++      
Sbjct: 866  LYVGLTRAKHALWIA-----TGTFYQTEHTPLWPLLGDPQAVPAQPGIVFDTAVPPAILP 920

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                   H        +  +          +   +  +   +    +       + +   
Sbjct: 921  RLTPEQPHSVPPARTAQRALLSDWWVYSFTQLAHAKAEPAPDGGRRIAEPLTGGQDEPAW 980

Query: 771  E-------------SLLSDNQTFNRGLIIHKLLQVIFTL-----------PEHKRKNFIT 806
                                     G+ +H++ +    L           P  +R   + 
Sbjct: 981  PQDAIQQPLPGSEVPAAPRFTGIRFGVALHEVFERTDFLAWSTWRANVPVPATERGVLLQ 1040

Query: 807  SYCTKNAKLWPAKEYKNLLL-----SITRLL-ENPMMTTAMSCDSYSEVSVSGKINCPKK 860
            +  +        +    LL      ++T +L E   +    + +   E+     I     
Sbjct: 1041 ALRSSGYVAEDVEAGVALLTPLVGHTLTSVLPEGVRLCDVPTTERRPEIEFQFVIQATAV 1100

Query: 861  DIII-------------------------SGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
            D ++                         +G ID I       ++ +YK++        H
Sbjct: 1101 DALLALLHDHGLLQQRQSFGMRRRLEGLMTGMIDLIYRHAGRWYVLDYKSNRLPDYTPAH 1160

Query: 896  IP-----YTHIAQLSIYEKILKD 913
            +        +  Q  IY   L  
Sbjct: 1161 LSVAMTDSEYDLQALIYTVALHR 1183


>gi|28199529|ref|NP_779843.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa Temecula1]
 gi|182682264|ref|YP_001830424.1| UvrD/REP helicase [Xylella fastidiosa M23]
 gi|28057644|gb|AAO29492.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa Temecula1]
 gi|182632374|gb|ACB93150.1| UvrD/REP helicase [Xylella fastidiosa M23]
          Length = 1243

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 140/980 (14%), Positives = 280/980 (28%), Gaps = 122/980 (12%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             + +  +    L  L   + + +   +  ++E G     KK+      +      ER+SL
Sbjct: 252  PDAALAVAETTLRHLWQTEGAALRSALHTALEEGVLN--KKSYKADALNDLWDWMERWSL 309

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEK-------LKKSQDEFIKIRDRFNTYKMFK 121
              + +   +  P+   +T    +   + +         + ++   ++       T +   
Sbjct: 310  APNAYP--EPHPKLQTLTVAALQAGTNKQGAGRSPNSPVSEAVQHYLDALTSIETARAQH 367

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                   L           K++  V  ++DLI      L      A +R  + Q+    L
Sbjct: 368  RLRRLHRLRAAARLRLTALKRQRRVQTYDDLIQRVAQALDGPHRLALVRS-LRQQYRMAL 426

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT + QW +   +  D         +   LF +GD KQ+IY F G +    L   
Sbjct: 427  VDEFQDTDVAQWRIFHHVFGDTEHAHTADLT-PALFLIGDPKQAIYGFRGGDVHTYLA-- 483

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSS 300
                     A +      L  +FRS   +L  ++ +++   +A  L+   +   ++  + 
Sbjct: 484  --------AAARAERAPPLERNFRSRPLLLRAIEALYTQAGDAAFLTPGIAFHPVQPGTH 535

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI-GT 359
                  +         Q      P   +          +++ ++      + I   +   
Sbjct: 536  CRDTDLSNAGVPAPALQVWQAPPPLDSTAKGKPKPWNADAARALCTDACVHAIHQWLADA 595

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             T  +    R + A DI VLVR  ++  L+            I  V   +  L       
Sbjct: 596  QTGRALLDGRPVGAGDIAVLVRSHREATLMQQAL----ARAGIPAVAAGKRSLLTTDEAN 651

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            + +AL   +L   D+      L + L   + + I               + Q+ A     
Sbjct: 652  EALALLLALLHSADEGRLRTALSTVLVGLTAETIATF----DHDSVASRHWQRQALHWRE 707

Query: 480  KFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            +      +  + +L  +            +L    G ++  +         L E L    
Sbjct: 708  RLHSGGPLGLLTDLCALH--------AARLLSLFDGERRLSNYLQ------LGELLQQV- 752

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAH-------SANHNEVRIMTVHTAKGLESPVVFL 590
                     L  L+  L +     K           ++   V+I+T+H +KGLE P+VFL
Sbjct: 753  ---HLRALGLHGLVDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLVFL 809

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                         +   +  +            Q+              K+  + E  RL
Sbjct: 810  PYVAIGRSHAGPGRYCVVHDAQQGRCLHWCLDKQA----PEWQRAETAWKQEQRAEEARL 865

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYVG+TRA   L I   +    E+ +      D           V    +  +I      
Sbjct: 866  LYVGLTRAKHALWIATGTFYQTERTALWPLLGD-PQAVPAQPGIVFDTAVPPAILPRLTP 924

Query: 711  AYEWSTHHPENTPLERE---------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                S                       +     E                +     P  
Sbjct: 925  EQPHSVPPARTAQRGALLSDWWVYSFTQLAHAKAEPAPDGGRRIAEPLTGGQDEPAWPQD 984

Query: 762  IDTKGKTNLESLLSDN-QTFNRGLIIHKLLQVIFTLPEHKRKN-----FITS---YCTKN 812
               +     E            G+ +H++ +    L     +                  
Sbjct: 985  AIQQPLPGSEVPADPRFTGIRFGVALHEVFERTDFLAWSTWRANVPVPATERGVLLQALR 1044

Query: 813  AKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII 863
               + A++ +  +  +T L+ +           +    + +   E+     I     D +
Sbjct: 1045 GSGYVAEDVEAGIALLTPLVGHTLTSVLPEGVRLCDVPTTERRPEIEFQFVIQATAVDAL 1104

Query: 864  I-------------------------SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP- 897
            +                         +G ID I       ++ +YK++        H+  
Sbjct: 1105 LALLHDHGLLQQRQSFGMRRRLEGLMTGMIDLIYRHAGRWYVLDYKSNRLPDYTPAHLSV 1164

Query: 898  ----YTHIAQLSIYEKILKD 913
                  +  Q  IY   L  
Sbjct: 1165 AMTDSEYDLQALIYTVALHR 1184


>gi|18310188|ref|NP_562122.1| ATP-dependent helicase [Clostridium perfringens str. 13]
 gi|18144867|dbj|BAB80912.1| ATP-dependent helicase [Clostridium perfringens str. 13]
          Length = 664

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 99/556 (17%), Positives = 179/556 (32%), Gaps = 117/556 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +       YE  K +  +LDF+DL I    LLK+      I       I +IL+DE Q
Sbjct: 149 YDIFNKCYEAYETFKNERGLLDFDDLQIKAVTLLKENPH---ILGYYRNLIKYILVDEFQ 205

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D   +Q E +R +                +F VGDE QSIYSF GA PK ++  +   + 
Sbjct: 206 DCDEVQLEFLRLI-------------NNEVFCVGDEDQSIYSFRGATPKCMINFEENFE- 251

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RS  +I+ V  +V    +        +              G
Sbjct: 252 -------GSEKVYLKYNYRSLKNIVEVSKEVIKHNKERYQKEIIAFN---------ENQG 295

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++L +      +                          A  IA  I             
Sbjct: 296 KIELKKPFNESEE--------------------------ANIIALKIEESKRLGN----- 324

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALG 425
                +  D  +L R   ++              KI     D+     +H   +DL+A  
Sbjct: 325 -----KYSDNAILYRTNMESRSFIDAF----IRKKIPFKLLDKEYNFFNHFICRDLIAYL 375

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  +   +   F  ++  P    S+  I+ +   + + E V++ +         + +   
Sbjct: 376 RLSIDPFNKEDFNKIINKPFRYVSKSAIYGVMNSKKK-ENVFDILMNVEGVHPFQMRKF- 433

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--S 543
           + +   I      S +     IL   +   Q+I  + ++     ++ L+     + +   
Sbjct: 434 EELKSDIAYLNKLSLNSAIDFILSDLEY-SQYIREYSSKFKQNQEDLLDIVEEFKSSAME 492

Query: 544 YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + S+   +S +E             N + V + T+H  KG++   V +V+   +   HK+
Sbjct: 493 FKSIITFLSHIESVEENLENLNSKGNIDSVILSTMHGVKGMQFNDVHIVNIVDETIPHKN 552

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YVG+TRA + L
Sbjct: 553 S-------------------------------------MENLEEERRLFYVGITRAINNL 575

Query: 663 IICKHSNTSNEKKSNQ 678
            +    +   + K   
Sbjct: 576 YLYAPKSVRGKFKEPS 591


>gi|217423556|ref|ZP_03455057.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 576]
 gi|217393414|gb|EEC33435.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 576]
          Length = 1270

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 130/1012 (12%), Positives = 285/1012 (28%), Gaps = 156/1012 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452  RYTLAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317  QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                        WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504  TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
              I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564  SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--------- 484
                   L S  F      ++++     E + +    +  +  G                
Sbjct: 620  LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASGNGGGARAASAGAPAPSPA 679

Query: 485  -------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFL 533
                   ++       + +       +  + G  +  ++ ++    E      + L E  
Sbjct: 680  DADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELT 739

Query: 534  NFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  +     +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF   
Sbjct: 740  QARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPF 799

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                         +      +D+ G  +        +       +   +    E  RL+Y
Sbjct: 800  LNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVY 857

Query: 653  VGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            V +TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++   + W 
Sbjct: 858  VALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQ 917

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----- 765
            A           P+           + +  +      +   +   I + S++ +      
Sbjct: 918  ALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDE 977

Query: 766  --------------------------------------------GKTNLESLLSDNQTFN 781
                                                         +   + +L+  +   
Sbjct: 978  SGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAGPRELAEDDILAFPRGAA 1037

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
             G  +H+LL++                  +          + L   +TRL+ +       
Sbjct: 1038 AGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELV 1097

Query: 836  ---MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQ 870
                +         +E+           + +                      + G ID 
Sbjct: 1098 PGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDM 1157

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1158 IVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1209


>gi|148927466|ref|ZP_01810969.1| UvrD/REP helicase [candidate division TM7 genomosp. GTL1]
 gi|147887190|gb|EDK72657.1| UvrD/REP helicase [candidate division TM7 genomosp. GTL1]
          Length = 933

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 135/846 (15%), Positives = 262/846 (30%), Gaps = 152/846 (17%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L    ++   Y  A + N + DF+D+I+     L   +V   +R+ + ++  +IL+DE Q
Sbjct: 97  LRALAHVYYEYLVAMQANTLYDFDDMILRVVHAL---EVFGELRFTLQEQYQYILVDEFQ 153

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q  ++ +LTE+       ++    +  VGD+ Q+IYSF GAE   +L  +   + 
Sbjct: 154 DTNGAQLRILLNLTEN-----EVNNGRPNILIVGDDDQAIYSFQGAEISNILTFQHRFRN 208

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    +II L  ++RS   IL    KV +  ++       S         +     
Sbjct: 209 --------PAIITLADNYRSAPAILENARKVITQGQDRLETHMKSLDKT-LTPHKPVTKS 259

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V+L E                                    I   I   +         
Sbjct: 260 RVELAELPTKN--------------------------HEYLWIVNQIKQRLDAGQ----- 288

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                 A +I VL R   +            +   I V    R  + D   I  L  L R
Sbjct: 289 -----NAHEIAVLTRTHSEMTH----LLPYFHHADIEVNYERRDNVLDLPPIAMLEQLAR 339

Query: 427 FILS----QEDDLSF--VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            ++     + DDL+     +L  P +      ++K+  + H +   +    +        
Sbjct: 340 ALVDIAEQRFDDLNGRLPELLSHPSWRLPPLTLWKLGLEAHNSRRHW---VEIMLETKGP 396

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-------------------------GRQ 515
            + + +++    H +      +   L+LG  +                          R 
Sbjct: 397 LKDIAEWLIVAAHRSMTAPLEEALDLLLGTHERQVPDNDEVEPTTRPSHQTEGFISPLRN 456

Query: 516 QFISRFGNEVIDVLDEFLNFT--------LRNEQNSYSSLQELISELEQY-----PPTIK 562
            F      E    L                  +      L++ +  ++ +     P T  
Sbjct: 457 HFFPHDALEKRPHLYILYLNALRRIRFKMRDYQPERLLHLKDFVEFIDLHRKTHTPITSP 516

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           R  S +   + +MT H +KGLE   VF+V+     +      +  ++P   + P  P   
Sbjct: 517 RPASEDAEGICLMTAHKSKGLEFETVFVVNVTHSTWGSGARARGRMIPYPANLPLAPAG- 575

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                               T +E  RL +V MTRA  +LII         + + +  + 
Sbjct: 576 -------------------ETDDERLRLFFVXMTRAKRELIISYALQDLVGRPTLRAEFL 616

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           +      + +W     S        L +    +  +    +   
Sbjct: 617 ATDNWHVIQPALPDTPESQKEAAEHQWYENVLSVSDGSLDKLLKPTLERYKLSATHLNNF 676

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKR 801
                        + +        +  L    +       GL IHK LQ           
Sbjct: 677 -----------IDVTSGGPQAFLLQNLLRFPQARLPNAAFGLAIHKALQRAHAHFNATGS 725

Query: 802 KNFITSYCTKNAKLWPAK-----EYKNLLLSITRLLENPMMTTA--MSCDSYSEVSVSGK 854
           +  +             +     ++++ +   + +L+  +          +  E S  G 
Sbjct: 726 RRPVEDILHDFETALGEQRLSNLDHEHFMQRGSDVLQTFLAARYESFQESAIPERSF-GS 784

Query: 855 INCPKKDIIISGRIDQISISQ--QNIFIFEYKTHHHV-----PQEIEHIP-YTHIAQLSI 906
                +   ++G +D + I    + I + +YKT           +IE I  + +  QL  
Sbjct: 785 QGVLIEGAALTGVLDLMLIDDANKTITVVDYKTGKAARRWQGSSDIEKIKLHKYKQQLMF 844

Query: 907 YEKILK 912
           Y+ +++
Sbjct: 845 YKLLVE 850


>gi|261885562|ref|ZP_06009601.1| putative recombination protein RecB [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 634

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 128/793 (16%), Positives = 248/793 (31%), Gaps = 174/793 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            + +E  KK+   LDF D+     +LL     S  + +++D  I HILIDE QDT++IQ+
Sbjct: 13  YSRFEAIKKE-NALDFIDVTRLVYELL-GNIDSDMLYFRLDDRIXHILIDEFQDTNIIQY 70

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           +++  L E+   G   +    + F VGD KQSIY F G   +   R +   ++       
Sbjct: 71  DILLPLIEETLSGSGQNDIG-SFFYVGDIKQSIYRFRGGRKELFSRLRNSYKQ------- 122

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + L  ++RS  +I+  V++ FS                + + S +   G V++ E 
Sbjct: 123 -IETLSLESNYRSAKNIVNFVNQTFSN----------KIKYYKTQLSCLENEGYVEVCEF 171

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           V  +       + E +                                         ++ 
Sbjct: 172 VSDEFYDTLFQKIEFFVK-------------------------------------NGVRY 194

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            DI +L  K  D   I            + V      +L +   ++ ++   ++ L   D
Sbjct: 195 DDIAILCWKNSDIINIKDKLE----KSGVPVATGGSNLLINSANVRVVLDFIKYCL-FGD 249

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           ++    +                       E + E   K +    ++    +K++   ++
Sbjct: 250 EIYIYSV----------------------HEFIGEKKSKLSLNATAELASTLKFVASYLN 287

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
           +  F                               L +    +L           ++   
Sbjct: 288 LECFDK----------------------------NLLKLYEISLGY--------ADIFDF 311

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +         +   +H  + ++TVH +KGLE   V + D  S+  S+  +       S  
Sbjct: 312 IFNIQNDQTPSADTSHCGITLLTVHKSKGLEFDHVIVADRLSRAGSNIDVFITEYNNSEQ 371

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                          ++   +L +  K    EE    LYV +TRA + LI+    +++  
Sbjct: 372 KWDIKLNDSALQNLGDSEFINLKQKCKDLDYEEDINKLYVALTRAKNSLIVMSKLDSNGL 431

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           K S  + +        + D                                   +     
Sbjct: 432 KPSYFKAFTSSKEQICYLDL----------------------------------KPFSVG 457

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
             E       F      + E   +    +  K     E  L        G  +H  L++I
Sbjct: 458 KIEPSKTSMSFYGGLERLEEFETIKKQAVSDKQNDEYELNLES---IYFGEALHYCLEMI 514

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVS 852
           F   E   KN  T+   +   +      ++++  +  L+ +      +   +   E  ++
Sbjct: 515 FDFEEENLKNAKTALINQFGAILSKNSIEDIINRVLNLINSVEFKNIIKDKNILKEQDIA 574

Query: 853 GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                   + +I  R+D + I    I + +YK+      + E        Q+  Y  IL 
Sbjct: 575 F-------NQVIK-RLDLLCIGDDEIVVMDYKSSKKFITQNED-------QVREYMSILS 619

Query: 913 DSYPNKSLVCLLI 925
                K L   L 
Sbjct: 620 QFILKKELSGKLF 632


>gi|188589230|ref|YP_001921985.1| ATP-dependent helicase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499511|gb|ACD52647.1| helicase, UvrD/REP family [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 668

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 103/609 (16%), Positives = 206/609 (33%), Gaps = 116/609 (19%)

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
              K ++T+  +  + D  +++  +   +   R +   ++   S      + +     YE
Sbjct: 108 KLIKKVLTKYFDDINEDKIKEVLNNISIYKTSRIKLYEFRPSIS----REIFEEALECYE 163

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
             KK+N  +DF+DL I   DLL+  + +        +   +IL+DE QD   +Q E ++ 
Sbjct: 164 HYKKENGKMDFDDLAIEALDLLQSNEKA---LIYYRKLFKYILVDEFQDCDELQIEFLKL 220

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           +               +LFAVGDE Q IYSF G++P  ++   ++         +     
Sbjct: 221 I---------NDGEDNSLFAVGDEDQCIYSFRGSKPMYMVTFDKMF--------KDSKKY 263

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L +++RS  +I+    K+    +        S                           
Sbjct: 264 YLSINYRSKDNIVERSKKLIKFNKERNNKEILS--------------------------- 296

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
            ++ +     + + ++   Q     ILA  +                 KK  I  ++  +
Sbjct: 297 -NKKDDGIIKFYTPYNEKSQGD---ILANLVKNE--------------KKYNINYEENAI 338

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSF 437
           L R   +   +            I     DR     +H   KDL+A  + +++  D  SF
Sbjct: 339 LYRTNMEAMSVIDAF----TKNHIPFRLLDRQYNFFEHFICKDLIAYLKLVVNPFDKESF 394

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
           + ++  P    S+ +I  +     +       I K         +  +  + +  +    
Sbjct: 395 IKIINKPFRYISKHNIDYVRNYTIQENLFNILINKEDTPPFQ--RKNLDELKKDFNYLNK 452

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELE 555
            S     + I+   +    ++  +  +    L++              + ++ + ++ +E
Sbjct: 453 ISLGSAISYIVMDLEYID-YLKSYCEKFSQNLEDLEEVIEEFKLSAEGFKNIFDFLAHIE 511

Query: 556 QYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                I+ + + N    V + T+H  KG+E   V+LV+       H              
Sbjct: 512 NVSNEIEVSKNKNQREGVILSTIHGVKGMEFKNVYLVNCNEDTIPHSSS----------- 560

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                    K+   EE  RL YVG+TRA D L +    N   + 
Sbjct: 561 -------------------------KEENIEEERRLFYVGITRAIDNLYLFAPKNRRGQL 595

Query: 675 KSNQRTWYD 683
           K   R   +
Sbjct: 596 KEISRFICE 604


>gi|168209670|ref|ZP_02635295.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens B
           str. ATCC 3626]
 gi|170712236|gb|EDT24418.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens B
           str. ATCC 3626]
          Length = 664

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 98/551 (17%), Positives = 176/551 (31%), Gaps = 117/551 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +       YE  K +  +LDF+DL I    LLK+      I       I +IL+DE Q
Sbjct: 149 YDIFDKCYEAYETFKNERGLLDFDDLQIKAVTLLKENPH---ILGYYRNLIKYILVDEFQ 205

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D   +Q E +R +                +F VGDE QSIYSF GA PK ++  +   + 
Sbjct: 206 DCDEVQLEFLRLI-------------NNEVFCVGDEDQSIYSFRGATPKCMINFEENFE- 251

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RS  +I+ V   V    +        +              G
Sbjct: 252 -------GSEKVYLKYNYRSLKNIVEVSKDVIKHNKERYQKEIIAFN---------ENQG 295

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++L +      +                          A  IA  I             
Sbjct: 296 KIELKKPFNESEE--------------------------ANIIALKIEESKRLGN----- 324

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALG 425
                +  D  +L R   ++              KI     D+     +H   +DL+A  
Sbjct: 325 -----KYSDTAILYRTNMESRSFIDAF----IRKKIPFKLLDKEYNFFNHFICRDLIAYL 375

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  +   +   F  ++  P    S+  I+ +   +   E V++ +         + +   
Sbjct: 376 RLSIDPFNKEDFNKIINKPFRYVSKSAIYGVMNSKKR-ENVFDILMNVEGVHPFQMRKF- 433

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--S 543
           + +   I      S +     IL   +   Q+I  + ++     ++ L+     + +   
Sbjct: 434 EELKSDIAYLNKLSLNSAIDFILSDLEY-SQYIREYSSKFKQNQEDLLDIVEEFKSSAME 492

Query: 544 YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + S+   +S +E             N + V + T+H  KG++   V +V+   +   HK+
Sbjct: 493 FKSIITFLSHIESVEENLENLNSKGNIDSVILSTMHGVKGMQFNDVHIVNIVDETIPHKN 552

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YVG+TRA + L
Sbjct: 553 S-------------------------------------MENLEEERRLFYVGITRAINNL 575

Query: 663 IICKHSNTSNE 673
            +    +   +
Sbjct: 576 YLYAPKSVRGK 586


>gi|289667697|ref|ZP_06488772.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1120

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 128/931 (13%), Positives = 258/931 (27%), Gaps = 105/931 (11%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFL-TQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           +   +L    +       F+      L             ++   ++P     +    D 
Sbjct: 89  EWLASLWHWFENFAAAPSFNTAPHAKLPKLTAAELAAGTNKKFADRTP--ASPMSHEIDG 146

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
           ++    R   ++  +       L     A     K++  V  ++DL+      L+     
Sbjct: 147 YLTALARVEAWRSRRRIALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGAQAD 206

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           A +  ++  +    L+DE QDT   QW +  ++  +  +          LF +GD KQ+I
Sbjct: 207 ALV-ARLRTQYAIALVDEFQDTDDRQWSIFSNVFGEGPLAHAA-GLEPALFLIGDPKQAI 264

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F G + +  L            A        L  +FRS   +L  +D +++    +  
Sbjct: 265 YGFRGGDVRTYL----------AAAVTAELAPPLSHNFRSRPGVLAAIDALYAQAGYSDA 314

Query: 287 LSEDSTTTIR-HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              D       H  ++       +      +    +                   + ++ 
Sbjct: 315 FLTDGIAFHPVHAGTKRVDEDLQRDGVTAPALTLWRAPEPPPPARGKPKPWSAGRARALA 374

Query: 346 ARRIAYTISNMIGTDTI-FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
                  I   +       +    R +QA DI VLVR   +   I      +     I  
Sbjct: 375 TAACVAAIRGWLAGGRDGTATINARPVQAGDIAVLVRSHGEATRIQQALGAV----GIPA 430

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
           V   +  L       +L+AL + +L   DD      L + L       I  +        
Sbjct: 431 VAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAAL----ERDG 486

Query: 465 TVYEYIQKFANCGISKFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             +   Q+ A     ++Q    +  + +L               +L    G ++  +   
Sbjct: 487 EHHRRWQQQALDWRERWQRGGPLALVGDLGATHG--------QRLLALIDGERRLTNYLQ 538

Query: 523 NEVIDVLDEFLNFTLRNE---QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                 L E L                L   I+  +      +    ++   V+I+T+H 
Sbjct: 539 ------LAELLQEADARALGPHGLVDWLSRRIANADDNDEAQQLRLESDARRVQIVTLHK 592

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P+VFL   G         +   +               +++  +   S      
Sbjct: 593 SKGLEYPLVFLPYIGIGRGDKGAGRHCVVHAPEIGRQLHW----KTERDDPSWSAAEAAW 648

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           K+  + E  RLLYVG+TRA   L I       +E+ +       +        E    I 
Sbjct: 649 KQEQRAEDARLLYVGLTRAEHALWIASGPFHQHERTALAGMLRALDALQGAAGEGAVVID 708

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            +        +        P     +R    +  +          +    D      +  
Sbjct: 709 TSTPPANLPRLPPPIEAQVPPARNPQRHIAPEWWVYSFTQLANADAGAATDPMASATVVG 768

Query: 760 S----------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK------- 802
           S           +        E           G+++H + +       H  +       
Sbjct: 769 SGGSDEPSGSEAVAVAVANEAEPFDPRFAGNRFGVVMHDVFERCDFAAWHAWRPGQAAPD 828

Query: 803 -NFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVS 852
                         +   E  + L  +T L+ +           +         +E+   
Sbjct: 829 GQAAPILEALQRGGYAQDELDDGLRMLTALIGHTLTVALPEGTRLADVPEPQRRNEMEFH 888

Query: 853 ---------------GKINCPKKDI----------IISGRIDQISISQQNIFIFEYKTHH 887
                           +                  +++G ID         ++ +YK++ 
Sbjct: 889 FAMRPTRVDALLALLHRFGVVGDRQAFGARQRLEGLMTGLIDLTYTVDGRWYVLDYKSNR 948

Query: 888 HVPQEIEHIPYT-----HIAQLSIYEKILKD 913
               + + +        +  Q  IY   L  
Sbjct: 949 LPSYDADALARAMAHSEYELQALIYTVALHR 979


>gi|169634534|ref|YP_001708270.1| exonuclease V, beta chain [Acinetobacter baumannii SDF]
 gi|169153326|emb|CAP02437.1| exonuclease V, beta chain [Acinetobacter baumannii]
          Length = 1232

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 122/920 (13%), Positives = 260/920 (28%), Gaps = 138/920 (15%)

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
            L  +   +K               +++++         ++F+   ++            +
Sbjct: 311  LADQKVFKKCPAEISDGFYQHPCIQQIQQLFGVLKNYAEQFDQLHIYLKAY----FCVEV 366

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                 +  +      F   I   ++ LK  +        +      IL+DE QDT+  Q 
Sbjct: 367  KKRLPQVLQNKGETTFSQQIRTLSEALKG-EQGQRFAVFVQARYPLILVDEFQDTNQDQD 425

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +++ S+                +  VGD KQ+IY F G +    L   +  Q +      
Sbjct: 426  DMLASIWR-----HPERYQKGCMIMVGDRKQAIYGFRGGDMLTFLNAYKDIQAKH----- 475

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                 +L  + RS AD++ VVD +F    +           +++   R G          
Sbjct: 476  -GREYKLIHNHRSVADLVEVVDALFQRQIDFGE-------QVQYDPIRAGT------RPH 521

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-----FSNGKK 368
             V    +Q NP    W    D   +       A+++A+ I +++            + + 
Sbjct: 522  PVLIDQNQPNPHPLRWLMLKDKETE-------AQQVAWKIRDLLNQSHAGQLYFQKDAQT 574

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            + +   DI VL R            +F      I V    +  + D    +D+ AL   I
Sbjct: 575  QTLNEDDIAVLSRNHDGL----DKVQFELERLGIRVNRPSKRSVFDCTIAQDVGALLTAI 630

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                D+      L S LF      + ++                            +   
Sbjct: 631  FHPYDEAKVKRALISRLFAMDLKQLLQLEQ------------------TAEGLSQFMTGF 672

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQN--S 543
              +  +         +   L      +  ++    +       L        ++ +    
Sbjct: 673  DTIRELWSAQGFLVAWQQCLNQFGIWKNLVAVQSKDNERVVVNLRHLTEILSQHSEKYQG 732

Query: 544  YSSLQELISELEQYPPTIKRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              +L     +  Q P   +       ++   V++MT+H +KGLE  +VFL+   +    +
Sbjct: 733  AQNLYHWYLKQLQSPLDREWELERRLSSEAGVQLMTIHQSKGLEFKIVFLLGADTPFREN 792

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV--SDLIKHLKKSTQEEYNRLLYVGMTRA 658
                          +    +        +        +K  ++    E NRL YV +TRA
Sbjct: 793  NKTLNFSTQDITVSESAQTLTQRVVAIADKTYLNETELKQHEERALAEQNRLWYVALTRA 852

Query: 659  SDQLI--ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            S ++   +      S    +  +   +        DE + +               E   
Sbjct: 853  SHRVYALLQDTDGKSVSGLAFWKNRAEPFQHRCCTDEIILEQPPAARHLNQHINIIEIQA 912

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID------TKGKTNL 770
             H  +               Q +  K+ + +    +   +L    +D      T     +
Sbjct: 913  QHFPDQRFYSRGKTSFSYLAQHLRHKVGTDLLASQSHEAVLAEDELDQVISVETATAQPI 972

Query: 771  ESLLS-DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP------------ 817
              + S   +    G  +H++ + I      +  + I      +                 
Sbjct: 973  SWIKSNFPRGTLAGNFLHEIFEHIDFQCSDEWVSEIRRRFKNDYSSLWQDLLIKYQESFP 1032

Query: 818  -AKEYK-----NLLLSITRLLENP-----MMTTAMSCDSYSEVSVSGKINCPK------- 859
              +E +      +   +  +L  P      +         SE      ++          
Sbjct: 1033 EEQEAEYSLYHAVAEWLQEILSTPLYQGFRLNQLQPEHYLSECPFYLALSDRVLAMKRIQ 1092

Query: 860  -----------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---- 898
                                 ++G ID +    Q   I +YK+++      ++       
Sbjct: 1093 QLFAEYGMEMPELLEARSARYLNGSIDLVYFDGQRYHIADYKSNYLGENLADYSVESIAQ 1152

Query: 899  -----THIAQLSIYEKILKD 913
                 ++  Q  +Y   L  
Sbjct: 1153 SMALASYWLQAGLYLVALHR 1172


>gi|53724197|ref|YP_103384.1| exodeoxyribonuclease V subunit beta [Burkholderia mallei ATCC 23344]
 gi|121599132|ref|YP_992524.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei SAVP1]
 gi|124385391|ref|YP_001026675.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC 10229]
 gi|126449813|ref|YP_001080042.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC 10247]
 gi|167004431|ref|ZP_02270189.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei PRL-20]
 gi|254178330|ref|ZP_04884985.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC 10399]
 gi|254200341|ref|ZP_04906707.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei FMH]
 gi|254358920|ref|ZP_04975193.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei 2002721280]
 gi|52427620|gb|AAU48213.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC 23344]
 gi|121227942|gb|ABM50460.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei SAVP1]
 gi|124293411|gb|ABN02680.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC 10229]
 gi|126242683|gb|ABO05776.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC 10247]
 gi|147749937|gb|EDK57011.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei FMH]
 gi|148028047|gb|EDK86068.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei 2002721280]
 gi|160699369|gb|EDP89339.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC 10399]
 gi|243060257|gb|EES42443.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei PRL-20]
          Length = 1270

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 130/1012 (12%), Positives = 285/1012 (28%), Gaps = 156/1012 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452  RYTLAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317  QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                        WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504  TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
              I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564  SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--------- 484
                   L S  F      ++++     E + +    +  +  G                
Sbjct: 620  LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASGNGGGARAASAGAPAPSPA 679

Query: 485  -------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFL 533
                   ++       + +       +  + G  +  ++ ++    E      + L E  
Sbjct: 680  DADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELT 739

Query: 534  NFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  +     +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF   
Sbjct: 740  QARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPF 799

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                         +      +D+ G  +        +       +   +    E  RL+Y
Sbjct: 800  LNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVY 857

Query: 653  VGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            V +TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++   + W 
Sbjct: 858  VALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQ 917

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----- 765
            A           P+           + +  +      +   +   I + S++ +      
Sbjct: 918  ALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDE 977

Query: 766  --------------------------------------------GKTNLESLLSDNQTFN 781
                                                         +   + +L+  +   
Sbjct: 978  SGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAEDDILAFPRGAA 1037

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
             G  +H+LL++                  +          + L   +TRL+ +       
Sbjct: 1038 AGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELV 1097

Query: 836  ---MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQ 870
                +         +E+           + +                      + G ID 
Sbjct: 1098 PGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDM 1157

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1158 IVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1209


>gi|288941210|ref|YP_003443450.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
 gi|288896582|gb|ADC62418.1| UvrD/REP helicase [Allochromatium vinosum DSM 180]
          Length = 669

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 105/706 (14%), Positives = 209/706 (29%), Gaps = 121/706 (17%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                   ++  +  +   G          L+   +        S  +        +  K
Sbjct: 60  AAREMRERVSHQLKGTQTRGLAISTFHRLGLEILRRHPEAAGLHSGFALLDAQDAESLLK 119

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             +       +        +       + D     ++ +   A       L A YE   +
Sbjct: 120 EGLRGLAEADALSPGAVQHRISRWKNDLVDPERAAQLAE--DAFEARLAALYADYERRLR 177

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               +DF+DLI+    L + +     I  +    I ++L+DE QDT+  Q+E++R LT  
Sbjct: 178 IYNAVDFDDLILAPTRLFRSQPA---ILEQWRGRIRYLLVDEYQDTNSAQYELVRQLTG- 233

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    +      VGD+ QSIY++ GA P+ + R +               +I L  
Sbjct: 234 ---------ARGAFTVVGDDDQSIYAWRGARPENLARLQEDYPA--------LRVIMLEQ 276

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS+A IL + + + +   +       S              G  +    +  + +   
Sbjct: 277 NYRSSARILGLANTLIANNPHVFEKRLWSEH------------GPGERARVIRCRDERD- 323

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                                  A R+   I ++               +  DI +L R 
Sbjct: 324 ----------------------EAARVVSEILHL---------KFAEKCRFGDIAILFRG 352

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                      R     + +    +          IKD MA  R + +  DD +F+ ++ 
Sbjct: 353 NHQARPFEQALRE----HSVPYFLSGGTSFFARTEIKDAMAYLRLLANPTDDTAFLRIVN 408

Query: 443 SPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIA 495
           +P        + ++    R +  T+                   +    ++ I +     
Sbjct: 409 TPRREIGSTTLEQLADHSRRQGLTLLAGCTDPGLAEHLNPRQRERLAAFVQLITDHRERG 468

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRNEQNSYS--SLQ 548
           +          +L A   +        ++         +++ L++  R  Q      SL 
Sbjct: 469 RADPVGA-ARALLQAVGYKGWLRENASSQPVAERRYQNVEDLLDWLGRLRQGESPKTSLV 527

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           EL+  L       ++   +  + V +MT+H AKGLE P VFLV    ++  H+   +   
Sbjct: 528 ELVDHLALMDVLDRQDEDSGGDRVHLMTLHAAKGLEFPQVFLVGMEEELLPHRTSIEEDS 587

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
           +                                        L YVG+TRA + L      
Sbjct: 588 IEEERR-----------------------------------LAYVGITRAREALTFTLAR 612

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                 +  Q      + +   +       +  +S    +      
Sbjct: 613 RRRRYGEWVQGEPSRFLSELPEDQLDWDGERREDSPEDRKARGRAH 658


>gi|163815247|ref|ZP_02206624.1| hypothetical protein COPEUT_01407 [Coprococcus eutactus ATCC 27759]
 gi|158449442|gb|EDP26437.1| hypothetical protein COPEUT_01407 [Coprococcus eutactus ATCC 27759]
          Length = 670

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 95/604 (15%), Positives = 186/604 (30%), Gaps = 126/604 (20%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           +    ++  +    E   ++      K ++ST       + +   YE   +    +DF+D
Sbjct: 124 RYDSQEDFARNVLGEIGCVKSEMCDLKSYESTTMKTDDFRVVYDDYENFLRYRGKIDFDD 183

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +++ T +LL +      I         +ILIDE QD + IQ++ ++ L ++         
Sbjct: 184 MLVFTYELLSQ---RQDILDMWRNRFQYILIDEFQDINTIQYDTVKLLAKE--------- 231

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               +FAVGD+ QSIY F GA P  + R  +              I  L +++R + D++
Sbjct: 232 -RNNIFAVGDDDQSIYGFRGAAPAIMKRFPKDFP--------GTKIEYLNMNYRCSYDVV 282

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               ++     +    +  S       +   G+   V + +       +           
Sbjct: 283 ECSKRIIKNNTDRYDKNLQS-------AFAPGESDRVHIVKVKDGTEQN----------- 324

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                          R+I   I  +              I   DI V+ R   +      
Sbjct: 325 ---------------RKIVDKIRELNSAG----------IPYSDIAVIFRTNTEPR---- 355

Query: 392 LTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                  +  I     D    +  H   +++    +      +    + ++  P    S 
Sbjct: 356 ALSSKLMENGIPFSMKDSIPNIFTHFLAENIFDYIKLARGCRERRVLLRVINKPNRYISR 415

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           D +                + +       +  + I  +   +      +P+     I  A
Sbjct: 416 DALDSSQVDFE--------MLRQYYKDKYRIVNNINVLENDLERISRLAPYAAVNYIRKA 467

Query: 511 KK---GRQQFISRFGNEVIDV---LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                  +++    G    D    LDE              S+   +  +++Y   +   
Sbjct: 468 VGLEAYVREYAEYRGVSADDYMDVLDEIQESARDFL-----SMDGWLEYIDRYTAELAEK 522

Query: 565 HSAN---HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           +       + V + T+H+AKGLE   VF++D    +  H                     
Sbjct: 523 NRTGSMIPDSVTLTTMHSAKGLEYAYVFIMDAAEGMTPH--------------------- 561

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                          K +     EE  RL YV +TRA   L I        +  +  R  
Sbjct: 562 --------------RKSVDNDNIEEERRLFYVAVTRAKYGLYIYVPQKIFGKNMNVSRFV 607

Query: 682 YDMV 685
            +M+
Sbjct: 608 QEML 611


>gi|33152201|ref|NP_873554.1| exodeoxyribonuclease V, beta subunit [Haemophilus ducreyi 35000HP]
 gi|33148423|gb|AAP95943.1| exodeoxyribonuclease V, beta subunit [Haemophilus ducreyi 35000HP]
          Length = 1198

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 126/860 (14%), Positives = 249/860 (28%), Gaps = 129/860 (15%)

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                   L A   + K  +    F D++   N  LK  D    +  K+  +    +IDE 
Sbjct: 343  LYQFLVRLRAKLADYKITHSEKSFNDMLTLLNQALK-SDNGDQLAAKVRCQYPFAMIDEF 401

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDT   Q+E+   +            + R    +GD KQSIY F G +    L      Q
Sbjct: 402  QDTDKQQYEIFSKIF------MQGEQTNRGFIMIGDPKQSIYQFRGTDIFTYLNAANEVQ 455

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
            ++            LP ++RS   I+   +++FS P               H      ++
Sbjct: 456  EK----------RTLPKNWRSLPSIVQAANRLFSFPPE-----------SPHSPFLYDEI 494

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT---I 362
            G  Q   +                   FD    + +A   A +I   +  M        +
Sbjct: 495  GFQQAIAKETDTELKGLAHCIFYLQPKFDF---QRAAEHCAYQIQQQLKQMEAGKFGLKL 551

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
              N   +  QAKDI +LVR +K+   +             SV  ++   +      +DL+
Sbjct: 552  TDNPAIQPFQAKDIAILVRNKKEANYVKQALANCGIR---SVYLSEDRSVYQSDLAQDLL 608

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L    L+     + + ++ S L+  S  +I+++       + + E    +        Q
Sbjct: 609  WLLYACLNPYQQSTLLTVVGSSLWGLSATEIYQLKHNEIAWDNLVERFVDY--------Q 660

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            H+ +    L  + Q          +    +   + ++         L E L   + + +N
Sbjct: 661  HIWQRQGILPMLHQLFLCEGLIKRLCANPQTSDRNLTDLL-----HLAELLQNAMSSLEN 715

Query: 543  SYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              + ++    +L              + +  V+I+T+H AKGL+ P+V+L   G +    
Sbjct: 716  ESALVRWYEHQLADDNKNEAHQLRLESENQLVQIVTIHKAKGLQYPIVWLPFIGEERGYT 775

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            +   K   +     +    ++        +        L+K    E  RLLYV +TRA  
Sbjct: 776  RKKDKNLKLYRDATNQECWLF-------GHADEQTKTLLEKGEHAEDLRLLYVALTRAES 828

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            QL +      +    +      D              +   ++   D++I  +      +
Sbjct: 829  QLNVILPQQFTENWNAVHYLLSDGELFLNKQFNPKTTVDYLDNKQFDDYIKLDEKALVDD 888

Query: 721  NTPLEREETIKQLMDEQK-----------------IPKKLFSPIKNDINEPYILNPSTID 763
              P    +    +                                         +  +  
Sbjct: 889  WRPTIASQADPIVRTFDAIIRKEGQITSFTALHHYHQAGYEKQYPARNVLIDTADHDSQQ 948

Query: 764  TKGKTNLESLLSDNQT---------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                  LE +    Q             G I+H   +        +     T     N  
Sbjct: 949  LLSDLMLEPISEAEQAYSVYNFPHSAKVGTILHYFFEKADFQQALELAQVATICEQLN-- 1006

Query: 815  LWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVSVSGKINCPKK-------- 860
                +    L    TR+   P       +         +E     ++             
Sbjct: 1007 -IEEQWQTVLQQWFTRVFATPFAEQQIALQDISCDQRLNEWGFYLRLTNEHALKELNELL 1065

Query: 861  ------------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---- 898
                                 + G +D ++      ++ +YK++       ++       
Sbjct: 1066 QKYGSISKDLPELQLPQLAGYVRGSVDCLAKVNGKFYVIDYKSNFLGSSAQDYSQQNLVK 1125

Query: 899  -----THIAQLSIYEKILKD 913
                  +  Q  +Y   +  
Sbjct: 1126 TIGQYRYDLQYLLYSLAVHR 1145


>gi|241668460|ref|ZP_04756038.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876993|ref|ZP_05249703.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254843014|gb|EET21428.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 671

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 110/617 (17%), Positives = 205/617 (33%), Gaps = 123/617 (19%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q +    +    T    +        A ++   Y++  K     DF+DLI     L K  
Sbjct: 138 QSKISFWKSALLTPNEIQPQDDLEEQAAFIYKEYQKYLKSYNSFDFDDLIFQPIQLFKNY 197

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              + I+     +  +ILIDE QDT+  Q+++++ LT+D                VGD+ 
Sbjct: 198 ---SSIQKLWSDKFRYILIDEYQDTNESQYQLLKYLTQD----------KNKFTVVGDDD 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY++ G+ P+ +   +           +   +I+L  ++RST  IL V +K+     +
Sbjct: 245 QSIYAWRGSRPENLRHLQEDF--------KDLKVIKLEQNYRSTGRILNVANKLIENNSH 296

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                     LW    S  D     +  S T+  D         
Sbjct: 297 IFDKK---------------------LW----SNKDYGEQIKVISLTNDEDE-------- 323

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ I   I         F +  K   +  D  +L+R      L+    +  K    I 
Sbjct: 324 --AQFITSDI---------FFDRVKTKSKNSDYAILIRSNYQAYLLERYMQMHK----IP 368

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHE 462
              +          IKD+++  R I++ +DD +F+ ++ +P        I K+       
Sbjct: 369 YTISGGSSFFSKSEIKDIISYLRLIVNLDDDRAFLRVVNTPKREVGSATIHKLGEYASEH 428

Query: 463 TETVYEYIQKFANCGISKF-QHVIKYIHELIHIAQFCSPHDFFTLIL--------GAKKG 513
             + +  +       I  F +  +    +LI   Q           L             
Sbjct: 429 HCSFFHTLYNLEKFEIRDFTKKNLSSFKDLILNTQQEINSSISAQELKNIINNFIDNISY 488

Query: 514 RQQFISRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           RQ  I    +E         + E     +N       N+  SL  +++++       +  
Sbjct: 489 RQWLIDSSSSEKQAEFRYANVIEVTKWIVNQLEGESYNALESLASVLNKMLLIDILDRDN 548

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              N N+V+I+T+H +KGLE   V+++     +  H+                       
Sbjct: 549 EDKNDNQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS--------------------- 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         +++ + E+  RL YV +TRA + L I    +     +         
Sbjct: 588 --------------IEEDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQISIPSRF 633

Query: 685 VYDSFHNDERVKKIKLT 701
           + +   +D      +  
Sbjct: 634 IDELPESDLYWVGTEKE 650


>gi|218289482|ref|ZP_03493710.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240350|gb|EED07532.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 706

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/547 (17%), Positives = 160/547 (29%), Gaps = 125/547 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K +   LDFED+I++   L +  +       +  Q   ++++DE QDT+
Sbjct: 274 LAKVYAAYETLKAERKTLDFEDMILHAIRLFRADEA---FTKRWRQRWRYVMVDEFQDTN 330

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW  +  L +          +   LF VGD+ QSIY F GA P  +    R       
Sbjct: 331 TAQWLFLLELVK----------AHNNLFVVGDDWQSIYYFRGARPDLMKEFLRRFP---- 376

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   + L  ++RS   I+ V  ++  + +             R  + R    G + 
Sbjct: 377 ----DAKRVTLETNYRSHDLIVDVGRRIIRLNDGH-------QLPKRVVAHRPMPEGAIA 425

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V S  +                          AR +A  +  +             
Sbjct: 426 QIVTVRSDLE-------------------------EARFVAQELQRLRKE---------H 451

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   D  VL R    + L          D +I           +   +K ++   R   
Sbjct: 452 GVSWSDCAVLYRTNIQSRLFEEAL----ADAEIPYHVVGDKHFYESPDVKIILDYLRTTQ 507

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              D   +  +L  P      D + ++                       K +  +  I 
Sbjct: 508 DTSDPTVWGHLLNRPKRYIPIDVVHEVQHG-----------GWEVVVAHPKCRAFVTTID 556

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L  I     P      ++    G  +            +D  +    R    + +S   
Sbjct: 557 TLRRI---EEPSKAIQWLVDNHPGLVRQQDEDEPIKW--VDSLIASASRY--KTVASFLR 609

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +  + +               V++MT+H AKGLE   VF+      +  H         
Sbjct: 610 FVDWIIEKSKE------PKDEAVQLMTIHKAKGLEWTTVFVAGLAEGLLPH--------- 654

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      K LK     E  RL YV  TRA D L +     
Sbjct: 655 --------------------------KKALKGEELREETRLCYVAATRARDNLYLLSAKW 688

Query: 670 TSNEKKS 676
             ++++ 
Sbjct: 689 YGDKERE 695


>gi|257052787|ref|YP_003130620.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691550|gb|ACV11887.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 948

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 135/916 (14%), Positives = 270/916 (29%), Gaps = 172/916 (18%)

Query: 42  GNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK 101
           G     + A      +  +   E  +         +   + ++   E ++          
Sbjct: 175 GWYRDGEAALDGDFEAFEELFAEANAPNEGANGATQSDLRDSLSGFERDRCFLPDAPGEG 234

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
           + +D +  I  ++      +   A       +   Y +   +   L+F  L +    LL 
Sbjct: 235 ELRDGYPSIDAKWAEEAFVEDREALKDFVHDVYVEYIQFALRRNYLNFSFLQLFAFVLLC 294

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           +                 +++DE QDTS IQ+++   L                L  VGD
Sbjct: 295 EDHALRESIA-----FEQVMVDEFQDTSEIQFKLALLLAG-----------TDNLCVVGD 338

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI----------IELPLSFRSTADIL 271
            KQSIY F  A  + +   +R  +        ++            I L  ++RST  IL
Sbjct: 339 WKQSIYGFQYAAVENIRSFERRLRTYKRELNGEYERVGFPVEEVTTIPLRRNYRSTQLIL 398

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
            +                          SR          E +    D     + +S   
Sbjct: 399 DL--------------------------SRHALTVPATGSESIERTVDDIDGLEADSARG 432

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTD---TIFSNGKKRVIQAKDILVLVRKRKDTPL 388
           +       S++   A  I   I  ++G D       NG  R     DI VL R R+    
Sbjct: 433 HSTIAAFTSASEREA--ILDRIETIVGNDDYAVDDENGDLRTPSYDDIAVLTRTRR---- 486

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                +   +++ + V       L +      L+A  R +  ++    +  +L+     +
Sbjct: 487 FGRELQTTADEFGVPVAYEGGVKLFETDQAILLLAWLRILADEDSRRGWAVVLE--RAGY 544

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +  ++ +I  +R   + +  + +                      +A   S       I 
Sbjct: 545 TLAEVEQILDERAYPDAMVSFQE---------------------GLAAMESIGAIVRQIF 583

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                     S         L   L         +   +   I        T +   +  
Sbjct: 584 ERYGFADASASS--------LVALLQDVSDGTTRNLGGMIRFIERSLDAEATHEIDDNPG 635

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + + + T+H AKGLE P+V + +     F         I                +  R
Sbjct: 636 GDSITVQTIHAAKGLEHPIVIVANINRYSFPPSGGGDDRIRFEDPIGLRQTKLSSTAHGR 695

Query: 629 NNIVSDLIKHLKK----STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
            ++  +    +         +E  RLLYV MTRA D L+                     
Sbjct: 696 PHLYDNWRYRVLSACLGRDYDEERRLLYVAMTRAQDHLLFSA------------------ 737

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                     V+   L  ++  +           PE+   E +E+     ++ ++   + 
Sbjct: 738 ---------GVEPSPLFENLPLE-----------PESVEPELKESGIDRTEQTRLQVSIP 777

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
            P       P+ L            +     + +    G  +H+  +        +  + 
Sbjct: 778 EPDVPAGQSPHALM--------DDRVFEDREEGRGIEFGNRVHEFAERYAAGEAVEPASD 829

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                                  +   ++    T  +  D+Y  V+V       ++ + I
Sbjct: 830 DER-------------------RVRDFIDGLDGTLLVEEDAYLPVAV------GEQQVTI 864

Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
           SG ID + +++  + I +YKT              +  QLS+Y  +++  YP++ +   +
Sbjct: 865 SGVIDLLHVTEDRVEIVDYKTDLTRDA-----VDEYRKQLSVYYHVVRHMYPDREVSPAI 919

Query: 925 IYVSEPKVFIIPQNKL 940
            Y +E     I    +
Sbjct: 920 FYTAEGDRLEIDPRPM 935


>gi|328884880|emb|CCA58119.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 1088

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 125/990 (12%), Positives = 276/990 (27%), Gaps = 139/990 (14%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L      Q +  + Y    +       L  A+ L+  S  +       
Sbjct: 61  AAVELRDRMAARLGGRRPPQATTFHSYCYALIRAHQDAEL-FAEPLRLLSGPEQDLAVRE 119

Query: 68  LLSS-FFLTQKF--------TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+    L +            +  + T+    +   +      ++   + +        
Sbjct: 120 LLAGHIDLEKAGLGGIRWPDELRACLTTRGFADEVRAVL-----ARSRELGLAPDALARF 174

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +        A    A Y +      VLD+ +L+     L +   + +          +
Sbjct: 175 AERVGRPDWKAAAAFLAEYLDVLDLQGVLDYTELVHRAVLLAEDISLPS---------YD 225

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            I +DE QDT   Q  ++ +L               T+ A GD  QSIY+F GA+   +L
Sbjct: 226 AIYVDEYQDTDPAQVRLLHALAG---------GGRGTVVAFGDPDQSIYAFRGADVNGIL 276

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                             +  L  + RS A +L     +       +  ++         
Sbjct: 277 DFPTAF--------GGADVRVLRTARRSGATLLGATRLLAQRMPMPRLPADRVRAHRDLT 328

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           ++R G       +    ++ ++  +  + +           +  +  A  +      +  
Sbjct: 329 ATRDGGRTEAYTYPTASAEAENIADLLRRAHLEDGVPWQDMAVLTRAAATLPSLRRALTS 388

Query: 359 TDTIFSNGKKRVIQAKDILVL-----VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                           +  V      +R                +               
Sbjct: 389 AGVPVETDAADTPLRHEPAVAPLLLALRAVAQVAGGRSARAEGASTTGRPARAEGAGTTG 448

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----- 468
              A                  + + +L SPL      D+ ++     + E         
Sbjct: 449 HGAAPGPEPVEPGAATEWLTTETALELLASPLAGVDPADLRRLGRALRDEERAAGTKVPA 508

Query: 469 ----------YIQKFANCGISKFQHVIKYIHELIH-----IAQFCSPHDFFTLILGAKKG 513
                        +        +      + +L+      +A   +  +   ++      
Sbjct: 509 PSDVLLTRALAEPERLAAHDPSYTRGAHRLGKLLQETRTLLADGGTAEEALWVLWNGTPW 568

Query: 514 RQQFISRF------GNEVIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PTI 561
             +           G      LD     F       E+     +   + EL+        
Sbjct: 569 PGRLERAALRGGPAGRNADRDLDAVCALFETAARAEERVGGRGVLNFLEELDAQDIAADT 628

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                   + VR+MT H +KGLE  +V +      ++     +   +        G+   
Sbjct: 629 LTRRHTRPDAVRLMTAHRSKGLEWSLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEP 688

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           +                   +   E  RL YV  TRA ++L++      + +     R  
Sbjct: 689 LTPG----------------ALLAEERRLFYVAATRARNRLVVTAVKAAAEDGDQPSRFL 732

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
            ++        + V                   +T  P+ +P  R+   ++L +   +  
Sbjct: 733 SEL----GAEPKDVPGRPRRPLAVPALVAELRATTVDPDASPALRDAAAQRLAELAALTD 788

Query: 742 KLFSP---------------------IKNDINEPYILNPSTIDTK-GKTNLESLLSDN-- 777
           +   P                        D + P  L+PS++D      +L+  L     
Sbjct: 789 EDGQPLVPAAHPDRWWGLFEPTRGPEPLRDRDRPVALSPSSLDNLVSTCSLQWFLGREVK 848

Query: 778 ------QTFNRGLIIHKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNL 824
                      G ++H L  +V            +            +A    A+E ++ 
Sbjct: 849 AAAPATAAQGFGNVVHVLADEVASGRTPADLDVLMARLDSVWDALAFDAPWKSAQEKQHA 908

Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEY 883
            +++ R L   +M       + SE      +   + ++ I G +D++   +    ++ ++
Sbjct: 909 RVALERFLSWHVMDRGGRTPAASEHGFDVTLEAGEYEVRIRGSMDRVETDEHGRAYVVDF 968

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           KT    P + E     H  QL++Y+  +++
Sbjct: 969 KTGKSAPTKDEV---AHHPQLAVYQLAVRE 995


>gi|253584163|ref|ZP_04861361.1| DNA helicase II [Fusobacterium varium ATCC 27725]
 gi|251834735|gb|EES63298.1| DNA helicase II [Fusobacterium varium ATCC 27725]
          Length = 945

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 125/921 (13%), Positives = 269/921 (29%), Gaps = 171/921 (18%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           L+      + S      +    L   F       +   I     +   +  +++  + + 
Sbjct: 98  LRLIDEYIEYSDFSEGYQVLDELEQHFFIFSKIKEFKEI-----EGYNEFFKEIPAANNW 152

Query: 107 FIKIRDRFNTYKMFKSTLAS----------LTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
               + +    ++ +   +           +   K  +  Y++   ++ V+DF  +    
Sbjct: 153 GKAGKIQKWVNRINEEGRSLDYVKEEQDKKIEFLKKAHELYQKLLIEDNVIDFASIQREI 212

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             +L   D    +  +I ++I +I+IDE QDT+ IQ ++I  L            + + +
Sbjct: 213 YKMLLNNDT---VLEEIREKIQYIMIDEYQDTNSIQEKIIFEL----------GGNRKNI 259

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ Q IY F GA  K +L               +  II L +++RS  DI+T  ++
Sbjct: 260 CVVGDDDQGIYRFRGASVKNILEFPNKFD------ENECRIITLDINYRSHKDIITFCNR 313

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
             ++                              W+    Q D Q    +E   +     
Sbjct: 314 WINLIN----------------------------WKNFRYQKDIQPPADKEFVDNPGVIR 345

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
              +S +     I   I N+     I             +  L +  + + +        
Sbjct: 346 IGGNSENQWKENIYKFIKNLKAMGKIED--------YSQVAFLFKSVRFSRVKE--LIDY 395

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
             +  I               +K ++     +  Q   L    +       +  D I  +
Sbjct: 396 LEERGIPTYSPRSKNFFYRKEVKLVLGALLVLFPQTKPLVLDDVYIRKTAAYYNDCIAVL 455

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYI-HELIHIAQFCSPHDFFTL--------- 506
                + + +YE+I K     I   +   + I      +  F +  +   L         
Sbjct: 456 KKYLAKDKELYEWILKNREKNIDLGEEKGENISRIFYSLFAFNTFKELIDLSKNGAKEGR 515

Query: 507 ------ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                 IL     + + ISR      + ++                L E           
Sbjct: 516 EIYNLGILSQIFDKFENISRIEYITKENIE---KVVRYFFVTHIRLLFE-------KGID 565

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                      V  MT+H AKGLE PVV +    S+  + +  ++  +   +        
Sbjct: 566 EYENKETLLGAVSFMTIHQAKGLEFPVVIVGSLESEPDNRELTEEDRLEDIITLGNDF-- 623

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                           +   +    ++ R+ Y   +RA + L++    N +  K+   + 
Sbjct: 624 ----------------EPRDRKNIFDFWRVFYTAFSRAQNLLVLTSIENRAGGKELPSKI 667

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
           +  +     + ++ +   +                +   E    E       ++  +  P
Sbjct: 668 FKPVYETIPYWNDEIFHFE------------KLQISKLKETETKEFLSYTGHILIYEDCP 715

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT----- 795
            +     + +         S                      G+++HK ++ I       
Sbjct: 716 LRYRFYKEFEFKPLKNNKTS---------------------FGILVHKTIESIHKEVKNN 754

Query: 796 ----LPEHKRKNFITS----YCTKNAKLWPAKEYKNLLLSITRLLENPMMTT-AMSCDSY 846
                 + + K  +                    +     I R +++       +     
Sbjct: 755 TEKIYSDEELKELVEKNYNILKKNVRVFLGENIRERAFEQIKRYVDSVKNNWNNLISSEE 814

Query: 847 SEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            E SV         + I+ G ID +      I + ++KT      +       +  Q+ I
Sbjct: 815 KEYSVE-------DNYILEGTIDLLRKQDDYIELLDFKTGRFSGYDDSRYAS-YERQIEI 866

Query: 907 YEKILKDSYPNKSLVCLLIYV 927
           Y  +L++ Y  ++L   L Y 
Sbjct: 867 YSYMLREKYNLENLRAYLYYT 887


>gi|15894290|ref|NP_347639.1| superfamily I DNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15023912|gb|AAK78979.1|AE007616_1 Superfamily I DNA helicase (rep-like helicase) [Clostridium
           acetobutylicum ATCC 824]
 gi|325508417|gb|ADZ20053.1| Superfamily I DNA helicase (rep-like helicase) [Clostridium
           acetobutylicum EA 2018]
          Length = 732

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 97/561 (17%), Positives = 192/561 (34%), Gaps = 113/561 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + +     YE  KK N ++DF+DL I    +    +    +         ++L+DE QD
Sbjct: 220 KIFEECYERYESYKKDNSLMDFDDLQIECMKMF---EERPELLRGYSNLFMYVLVDEFQD 276

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           +  +Q ++++ L+E             +++AVGDE Q IYSF G+ P  ++   +I    
Sbjct: 277 SDSLQIKLLKMLSE-----------KSSIYAVGDEDQCIYSFRGSRPDCMVDFDKIF--- 322

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +    + L  ++RS  +I+ +   + +  E       D+              G 
Sbjct: 323 -----KDGRKLFLSTNYRSVRNIVDISKNLIANNEKRNLKDIDAN---------KSDSGK 368

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           + +                              + +I A +I   I  +           
Sbjct: 369 ITII--------------------------NSKNENIEADKITIEIEKL---------KN 393

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGR 426
                  DI +L R   ++  +            I     DR     +H   KD+ A  R
Sbjct: 394 ISDYNYSDIAILYRTNVESRSLIDSF----IRRNIPFKFLDREYNFFEHFICKDIAAYLR 449

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             + + +  SF+ ++  P    S+ ++ K+       E+V++ ++   +  I + +  I+
Sbjct: 450 LSIDEFNRESFLRIINRPFRYISKVNLQKVK-SYGNMESVFDILKNIEDLPIFQIKD-IE 507

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ--NSY 544
            +   I      S       I+                  D ++E ++     +   + Y
Sbjct: 508 KLQTKIRNLNKMSLLSAVQFIISDLGYSDYIQDYCKKRGFD-VEEMMDIIEEFKSACDGY 566

Query: 545 SSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           +++ + +S +E+    IK      + + V + T+H  KG+E   VF+++   +   HK+ 
Sbjct: 567 NNIIKFLSHIEEVREKIKENKVDTSKDTVLLSTIHGVKGMEFKNVFIINCDEENIPHKNS 626

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                    EE  RL YVG+TRA + L 
Sbjct: 627 ID------------------------------------ENIEEERRLFYVGITRAIENLW 650

Query: 664 ICKHSNTSNEKKSNQRTWYDM 684
           I   S      +   R   + 
Sbjct: 651 ISITSELKGCVRKPSRFIKEC 671


>gi|160902262|ref|YP_001567843.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
 gi|160359906|gb|ABX31520.1| UvrD/REP helicase [Petrotoga mobilis SJ95]
          Length = 706

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 108/646 (16%), Positives = 211/646 (32%), Gaps = 131/646 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L++ +     +  +S+L            K+   +EI+      KE++      +     
Sbjct: 152 LRKYATLLDYKNNYSILDKEDSKDLLKMAKSEYIKEISDNYKLPKEEVIMKIISYSCNTL 211

Query: 113 RFNTYKMFKSTLASLTL---AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                 + +     L      + + + Y + KK    +D++DL++NT  L K       +
Sbjct: 212 TSLRESILERAPYLLNFERDIEQIWSIYIQLKKDMNAMDYDDLLVNTLVLFKTHPE---V 268

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             K   +  ++L+DE QDT+ IQ E++ +L+          S    L  VGD+ QSIYSF
Sbjct: 269 LNKCSSQFKYVLVDEFQDTNKIQIELVEALS----------SVHGNLIVVGDDSQSIYSF 318

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  K V               ++  + ++  ++RST+DI+ +++ +       + L  
Sbjct: 319 RGALFKNVKDFIED---------ERTKVFKIQSNYRSTSDIVGLINHLIPSNSVPKVLKP 369

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
              + ++                                       + +       A  +
Sbjct: 370 KRKSYLKP-------------------------------------FVVETFDDLEQADAV 392

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I + +             +  KDI VL R       ++ + +   +   I       
Sbjct: 393 VKIIEDKLKEG----------LDYKDIAVLYRSHS----LSMVLQQKLDSKGIPYRILSG 438

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT----------Q 459
               +   IKD++A  + + +  D +S+  +LK            KI            +
Sbjct: 439 LRFIETAHIKDILAFLKVLNNPLDKISWSRILK-LFPGIGNKTASKIYEEIETGIGKSPE 497

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA-KKGRQQFI 518
           R + E             I+KF+  ++ + +L    +  SP +    I     +      
Sbjct: 498 RGQGEENDNISNILKETEINKFKTPLELLTKLFDN-KESSPDELIDTIYKDFYQEYSFLT 556

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH--SANHNEVRIMT 576
                     ++ F     R +     S+   I +L               + N++ + T
Sbjct: 557 YADSKSRNMDIERFSEIASRYD-----SVSAFIEDLTLSEEIGVIPASRDKDENKLTLTT 611

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE  VV L+      F +                                    
Sbjct: 612 IHGAKGLEWKVVILISVNPGDFPNG----------------------------------- 636

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             +K+   +E  RL YV +TRA ++L I K    +         ++
Sbjct: 637 LAIKEQKLDEEERLFYVAITRAKNELYILKQLTGTTNPYLKNSFYF 682


>gi|329946360|ref|ZP_08293927.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527336|gb|EGF54334.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 1146

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 143/1046 (13%), Positives = 282/1046 (26%), Gaps = 216/1046 (20%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
                +   +L +A       E     +S  L       +N+++  +++ + DL + L + 
Sbjct: 155  ARSWQIVTSLLEARTLPLPSESLIHNASAALVLSDALSQNLLS--LDEAATDLAD-LTEQ 211

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                  I+          + ++       + A  +  K+++ +LDF D I     + +  
Sbjct: 212  FTALAAIKGCKTLVGKAPAVMSEWEALLDVVAELQGYKRRHGLLDFGDQIALACAIAESV 271

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              +A    ++  +   +L+DE QDTS+ Q  ++ +L  D             + AVGD  
Sbjct: 272  PEAA---AQVRSQYPAVLLDEFQDTSVAQVRLLSALFADSG-----------VTAVGDPH 317

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKF---SIIELPLSFRSTADILTVVDKVFSI 280
            Q+IY + GA    +    +      ++         +++L  S+R+ + IL V + V   
Sbjct: 318  QAIYGWRGASAGALDTFHQRFNPTGSSGTPPADAAPVLDLSTSWRNDSTILEVANAVSE- 376

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                 G+ +D      H +          +             P         D + +  
Sbjct: 377  -PLRSGVVQDGDPMGEHIA----------VAPLRARSVSFGLEPGAVHGAFLQDPVEE-- 423

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                 AR +A  ++              R     ++ VL R R     I           
Sbjct: 424  -----ARTVAAFLAE-------------RWSPGAEMAVLCRTRTQMEPIAAELEA----A 461

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             +         +     + D+ AL       E     V +L    F     D+  + T  
Sbjct: 462  GLPYTIVGLGGMLYVPEVADVRALLTAASDPERGDRVVRLLTG--FGIGAGDLRALATLA 519

Query: 461  HETETVY--------EYIQKFANCGISKFQHVIKYIHEL--------------------- 491
             E             E                +  +                        
Sbjct: 520  REVINPTPEPSRNGTEGRASQDEADSPLLSEALDTLLRWDEEGVDQPVPDVVHDLTAAGR 579

Query: 492  ------------IHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLNFTLR 538
                        +  A      D  TL         +  +R G       LD F    L 
Sbjct: 580  AVALRTARAIRCVREAIALPLPDLVTLAEQVLDLDIEIAARVGDPMGHRALDSFQETALT 639

Query: 539  NEQ-NSYSSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                   ++L   +  L+                +   V+++TVH AKGLE  VV +   
Sbjct: 640  FAADTDAATLTGFLEWLDAAEEQEDAMTAPEVDTSPGAVQLLTVHAAKGLEWDVVAVPGM 699

Query: 594  GSQVFSH----------------KHIKKMHIMPSLNDDPGIPIWI--------PQSKSRN 629
              QVF                           P   D   +P +                
Sbjct: 700  DEQVFPSYTSSVKEDLRVVETGWMGSTSTFPFPLRADADDLPPFTVGDLDPAVTDKPLLT 759

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY------- 682
              ++   + L + +  E  RL YV  TRA  +L++     +    K  + + +       
Sbjct: 760  ETMNAYKEALGRQSLREERRLAYVAFTRARHELLLTGSHLSKTASKPRRPSRFLTELRRR 819

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            D++             +        +   +      PE        T     DE+ +  +
Sbjct: 820  DLLATYGDGWVDFDDSRPNPLTALTQVGTWPLDADEPEAPGTGTPGTRGAHGDEETLTDR 879

Query: 743  L-----------------------FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                                      P   + + P  +  ++ +T  +  LE+ L   + 
Sbjct: 880  AGGLRRARWAAAAQVAAAMSDTRPTEPASAEPSAPAQVAQTSDETLQRWQLEAGLLLAER 939

Query: 780  FNRGLIIH--KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK--------------- 822
                      +L + +        +     +     +  P +                  
Sbjct: 940  ARATTATSTVRLPEHLAATRLDDLRADRQRFALDLRRPLPPEPRAAGRLGTVFHDAVAQR 999

Query: 823  ---------------------NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
                                      + R L+     + +     +E             
Sbjct: 1000 LSARGTLFSLGEAGVPDNLDPQDRARVERWLDTAENLSLLDDYVLAE--TETDREITVGA 1057

Query: 862  IIISGRIDQIS--ISQQNIFIFEYKTHHH-VPQEIEHIPYTHIAQLSIYEKILK--DSYP 916
              +  R+D +   + +    I ++KT    VP +          QLS+Y          P
Sbjct: 1058 TTLRCRMDAVFRRVDRAGWLIVDWKTGRRQVPVD----------QLSVYVHAWAASQGVP 1107

Query: 917  NKSLVCLLIYVS--EPKVFIIPQNKL 940
              S+  + +YV     +V  +    L
Sbjct: 1108 VGSVRAVYVYVDYPGGRVDELTDADL 1133


>gi|295112231|emb|CBL28981.1| Superfamily I DNA and RNA helicases [Synergistetes bacterium SGP1]
          Length = 682

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 108/731 (14%), Positives = 201/731 (27%), Gaps = 134/731 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L +K  W +                      + ++   L      +     
Sbjct: 30  GAGSGKTRVLTHKVAWLIAEGLARPWEITAVTFTNKAAGEMRERVSALVPDGADKVWVST 89

Query: 66  FSLLSSFFLTQKFTPQKNIIT----------QEINKKSPDLKEKL-----KKSQDEFIKI 110
           F      FL +     + +             +       + E+L       +    +  
Sbjct: 90  FHAFGLRFLFRNPEAVERLTGLRTGFAVLDRGDSRSLVGQIMERLGVNTKDTAPASVLDA 149

Query: 111 RDRFNTYKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             R             L  L   +   Y  A ++   +DF+DL++    +L +      +
Sbjct: 150 ISRDWAAWAPGPREPLLEGLYLDIANEYRRALRERNAVDFDDLMVLPLQVLTQD---REL 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I  +L+DE QD +  Q+ ++R+L                L  VGD  QSIY +
Sbjct: 207 REREQARIRWLLVDEFQDVNRPQYLLLRNLVG----------PDCLLNVVGDPDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+   +L  +R    R          I L  ++RST +IL   + +            
Sbjct: 257 RGADIGMILNFERDF--RGEEGHADAKTIVLDENYRSTGNILAASNALIRNNSTRMKKDL 314

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            ++  +  +   +                                     +S    A  I
Sbjct: 315 RTSRGMGEKVYTLLA-----------------------------------NSDLQEADFI 339

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I+ +                  +I +L R+   + L       L     I       
Sbjct: 340 TAEIARL---------KAHHGYDYGNIALLYRQNAMSRLYEQKFLEL----GIPYRIVRG 386

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE----- 464
               +   ++D++AL +  L+  D  SF    +  +            +           
Sbjct: 387 VAFYERREVRDVLALLKLALNPNDLTSFERAAEFAVKGMGPKRREDWTSWLASGAVPTSP 446

Query: 465 --TVYEYIQKFANCGISKFQHVIKYIHELIHI---AQFCSPHDFFTLILGAKKGRQQFIS 519
               +    K A     +           +                 +L      +   S
Sbjct: 447 ASDFWGAAAKGAWPVRGQVGAAAAEFAAHMARLLAVSERGIGPAVDYVLNQMGYEELLRS 506

Query: 520 ---RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                  E  D + E  +            L E ++E   +    ++    + N V ++T
Sbjct: 507 KEPESWEERYDNVMELRSVV------PEGGLSEALAEAALFTDADRQDD--SGNAVGLLT 558

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE PVVFLV     VF     K                                
Sbjct: 559 LHAAKGLEFPVVFLVGMEEDVFPSSRAKD------------------------------- 587

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +    EE  RL YVGMTRA ++L +    +      +  + +   +Y+       + 
Sbjct: 588 ---QPDQLEEERRLCYVGMTRAEERLYLTAARSRRLYGTTLSKGFSRFIYEVPEQYREID 644

Query: 697 KIKLTNSINKD 707
                     +
Sbjct: 645 DRAGEGRGWDE 655


>gi|189201746|ref|XP_001937209.1| ATP-dependent DNA helicase pcrA [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187984308|gb|EDU49796.1| ATP-dependent DNA helicase pcrA [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 851

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 125/707 (17%), Positives = 213/707 (30%), Gaps = 163/707 (23%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + + Y+E    + +LD++DL++   DLLKK              I  +LIDE QDT+ 
Sbjct: 168 AMVYSSYQEHLAASNLLDYDDLLMRCVDLLKKSPSCV-------STIQAVLIDEYQDTNN 220

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+E++  L +            + +  VGD  QSIYSF  AE K +LR +    +    
Sbjct: 221 IQYELMSLLAQ----------KTKRITIVGDPDQSIYSFRSAEIKNLLRMRTDYPESV-- 268

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I L  ++RS+  IL+    V    E+    +  +T  I  + +          
Sbjct: 269 ------VINLENNYRSSGCILSSAMAVIEQDESRPQKALVATHGIGEQPT---------- 312

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                    L    SA++ AR I   I                +
Sbjct: 313 -------------------------LRHLISANVEARWIVEEIHR-------TKTLTAGL 340

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +   D  +LVR    +PL   + R L     I           D   IK ++   R I  
Sbjct: 341 LSFNDYAILVRS---SPLTLQIERALG-QAGIPYRMVAGTKFFDRAEIKIILDYLRVISQ 396

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFANCGISK--------- 480
            + + +   ++  P     +  +  +  +      T+++ +   A               
Sbjct: 397 PDHNDAVARVINVPSRKVGDVTVKALLEEAEVRKVTLWKLVLDVAQGRRKPQCKVSAQAN 456

Query: 481 --FQHVIKYI-----HELIHIAQFCSPHDFFTLILGAK---KGRQQFISRFGNEVIDVLD 530
                 +  I       L   +  C        +L         +Q       +    ++
Sbjct: 457 IGISQFVNVILTSREKLLPAKSDECDLFGLIMHVLNKIAFQSYLKQAHKENWQDRWANVE 516

Query: 531 EFLNFTLRN---------------------EQNSYSSLQELISELEQYPPTIKRAHSANH 569
           E +N   +                      EQ S ++   L   L     +       + 
Sbjct: 517 ELINQATQMATAVANGEEISDDALPEVEGLEQRSDTAADLLSKFLANVTLSSAADQDGSE 576

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            ++V I T+H AKGLE PVVF+         H                            
Sbjct: 577 LDQVTISTIHAAKGLEWPVVFMPAVYDGSIPHS--------------------------- 609

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                      +   Q+E  RLLYVGMTRA   L +      S ++++    +       
Sbjct: 610 -----------RAEDQDEERRLLYVGMTRAQGLLYLSCPVKQSGQEQTTLSRFISDRKIQ 658

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER------EETIKQLMDEQKIPKK 742
              +ER   +    S   D       +     +    R      E+       E+     
Sbjct: 659 KLFNERGPDLAFKRSTIPDLARILRRNCPTTADIDAARNLLDRPEDDKYPATREELDGDD 718

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                  D N  +    +T     K  L +  S          +H +
Sbjct: 719 STYGAPWDNNNNHKNPGTTYGASKKRKLNNPTSST------TAVHSV 759


>gi|169627503|ref|YP_001701152.1| exodeoxyribonuclease V, beta subunit (RecB) [Mycobacterium
           abscessus ATCC 19977]
 gi|169239470|emb|CAM60498.1| Exodeoxyribonuclease V, beta subunit (RecB) [Mycobacterium
           abscessus]
          Length = 1081

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 126/983 (12%), Positives = 256/983 (26%), Gaps = 167/983 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSL----SMETGNPTILKKAQTLQQASQTQCIE 63
           +  ++ +   +D   L  F  + I              G         TL +       E
Sbjct: 94  AEQDTRQRRLRDA--LAGFDAATIATTHQFCHIVLKSLGVAGDSDSGVTLVENLDELVCE 151

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
                  + F   +  P  +             +E ++    +   ++            
Sbjct: 152 IVNDRYLTHFGKDRDAPPLSYP-----AALRLAREVVRNPATQLRPLQPE-----ADSYA 201

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A+L  A+ +    E  K++  +L F+DL+    D L   D  A +  ++ Q    +++D
Sbjct: 202 FAALGFARDVLEQLEIRKRRRGILGFDDLLTRLADALNATDSPARV--RMHQRWPIVMVD 259

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT  +QW+V+              S   TL  +GD KQ+IY+F G + +  LR    
Sbjct: 260 EFQDTDPVQWQVLER----------AFSGHSTLVLIGDPKQAIYAFRGGDIETYLRAAA- 308

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                           L  ++RS A ++  +  V    +              H+  R+ 
Sbjct: 309 ---------TAGDKQTLGTNWRSDAALVDRLQVVLRGAQLGGPDIVVHDVQAHHQGHRLA 359

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                  +   V   +                 P       + R +A  I  ++ +   F
Sbjct: 360 GAPHNDPFRLRVVSRNRDGIKVI----------PIADLRRSIGRDLAADIGALLSSGATF 409

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                R ++A+DI V+V   KD                I  V      +    A +D + 
Sbjct: 410 DG---RPVRARDIAVIVEAHKDARACHTALTE----AGIPAVYTGDTDVFSSDAAQDWLY 462

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           L                  +  F  + + +        +                     
Sbjct: 463 LLEAFDQPHRPGLVRAAAATVFFGETAETLAVGGESLTD--------------------E 502

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +   +      A+       F     A  G++    R G  ++  L             +
Sbjct: 503 IAGTLRTWAARARERGVAAVFEAAQLAGMGKRVLSWRGGERMMTDLAHLTELLQETAHRN 562

Query: 544 YSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                 L   L              R   ++   V+IMTV  +KGL+ PVV+L  + ++ 
Sbjct: 563 GFGPAALRDWLRTQCSEGGAEAERNRRLDSDAAAVQIMTVWVSKGLQFPVVYLPFSFNRY 622

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
              +          +         +      +   S      +     + +RL YV +TR
Sbjct: 623 VPER--------EYVLYHEDGLRCLHIGGREDPDYSMADLAGRTEAARDASRLAYVALTR 674

Query: 658 ASDQLIICKH-----------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           A  Q++                        N             + + +K+++   +   
Sbjct: 675 AQSQVVAWWAPSFDEPNGGLSRLLRGRAPGNPSVPDKCSPAKISDADVLKRLRAWEAQGG 734

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                   +   P  T    +    ++ D         +     +        S+     
Sbjct: 735 PVVEDALVTGFVPAATSSPSDNLAVRVFDRPIDTAWRRTSYSGLLRAAEESGVSSEPEIA 794

Query: 767 KTNLE-----------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
           + + E                  +         G ++H +L+    L         T   
Sbjct: 795 ELDDEVDEIPLRSMPAGADVPSPMAQLPAGAAFGSLVHAVLETTDPLAPDLVAELQTQII 854

Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKK- 860
               +         L  ++  + + P+        +      D   E+     +      
Sbjct: 855 RHRERWPVEIPAAELAAALEPMHDTPLGPLLPGVTLRQIGLRDRLCELDFEFPLAGGDAA 914

Query: 861 -----------------------------------------DIIISGRIDQISISQQNIF 879
                                                       +SG +D +        
Sbjct: 915 ADSFARLADVGMLLREHLAADDPLGVYASRLTGPGLGGQSLRGYLSGSVDAVLRVGSRYV 974

Query: 880 IFEYKTHHHVPQEIEHIPYTHIA 902
           + +YKT+     +       +  
Sbjct: 975 VVDYKTNWLGTGDAPLTAADYSR 997


>gi|121607593|ref|YP_995400.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121552233|gb|ABM56382.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 697

 Score =  229 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 115/720 (15%), Positives = 197/720 (27%), Gaps = 138/720 (19%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           I   +  +    +                 + ++A+ L      + +   F  L    L 
Sbjct: 34  ITHKIAHMIERGLEPGRIAAITFTNKAAAEMRERARGLIGRRAKEVLVCTFHALGVRMLR 93

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM--------FKSTLASL 127
                        I     D+   LK +      +                   +  A  
Sbjct: 94  ADGARLGLKPQFSILDAD-DVTGILKDAAGGTTDLATARQWQWTISQWKNMGLNAGQALA 152

Query: 128 TLAKY-------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             A         L A YEE       +DF+DLI     LL+     A +R K    + H+
Sbjct: 153 RAADDGERSIATLMARYEERLTAYQSVDFDDLIGLPLRLLRD---FAELRAKWQAALGHV 209

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+  Q+E++R L  +               AVGD+ QSIY + GA    + + 
Sbjct: 210 LVDEYQDTNGTQYELLRLLVGE----------RGHFTAVGDDDQSIYGWRGATLDNLKKL 259

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                +          +I+L  ++RST  IL   + V +        +  S         
Sbjct: 260 PIDFPQ--------LKVIQLEQNYRSTNAILRAANHVIAPNPKLFAKTLFSELG------ 305

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
             G+   V +                              +    A R    I ++    
Sbjct: 306 -EGEPVRVVV----------------------------ADNQEHEAERAVARIQSLRAAS 336

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
               +        K   +L R            R       I    +      D   IKD
Sbjct: 337 NPPPD-------WKGFAILYRANHLAKPFEKALR----KASIPYKVSGGTSFFDRAEIKD 385

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY------IQKF 473
           L A  R  L+ +DD +F+  + +P        +  +        ++++            
Sbjct: 386 LCAWFRLWLNNDDDPAFLRSITAPRRGIGHTTLAALGAFATQHRQSLFGALFNGMLPAAV 445

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPH----DFFTLILGAKKGRQQFISRFGNE----- 524
               +       +YI+EL H A+          F    L      Q       +E     
Sbjct: 446 PQRALDGLHAFGRYINELEHNARHTHGAGQSLAFLHQWLKDIGYEQHLYDSEDSEQRAAA 505

Query: 525 VIDVLDEFLNFTLRNE-------------QNSYSSLQELISELEQYPPTIKRAHSANHNE 571
               + EF ++  +                    SL  +   +               + 
Sbjct: 506 RWSNVLEFCDWMAQRAGGQIDEQTGATGPDQPGKSLLAVSQTIALLSTISGHEKEQ--DM 563

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + T+H AKGLE P V L      +                               +  
Sbjct: 564 VTLSTLHAAKGLEWPHVILAGVTEGMLPF------------------------KIDDDEG 599

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               +     +  +E  RL+YVG+TRA   L +         +          + D   +
Sbjct: 600 RRQPLGDDMLARLQEERRLMYVGITRAQRTLAVSWSRQRKKGRDMVAAQPSRFIADMELD 659


>gi|254298121|ref|ZP_04965574.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 406e]
 gi|157807178|gb|EDO84348.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 406e]
          Length = 1270

 Score =  229 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 130/1012 (12%), Positives = 285/1012 (28%), Gaps = 156/1012 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452  RYTLAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317  QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                        WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504  TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
              I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564  SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--------- 484
                   L S  F      ++++     E + +    +  +  G                
Sbjct: 620  LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASGNGGGARAASAGAPAPSPA 679

Query: 485  -------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFL 533
                   ++       + +       +  + G  +  ++ ++    E      + L E  
Sbjct: 680  DADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELT 739

Query: 534  NFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  +     +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF   
Sbjct: 740  QARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPF 799

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                         +      +D+ G  +        +       +   +    E  RL+Y
Sbjct: 800  LNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVY 857

Query: 653  VGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            V +TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++   + W 
Sbjct: 858  VALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQ 917

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----- 765
            A           P+           + +  +      +   +   I + S++ +      
Sbjct: 918  ALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDE 977

Query: 766  --------------------------------------------GKTNLESLLSDNQTFN 781
                                                         +   + +L+  +   
Sbjct: 978  SGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAEDDILAFPRGAA 1037

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
             G  +H+LL++                  +          + L   +TRL+ +       
Sbjct: 1038 AGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELV 1097

Query: 836  ---MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQ 870
                +         +E+           + +                      + G ID 
Sbjct: 1098 PGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDM 1157

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1158 IVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1209


>gi|134283868|ref|ZP_01770565.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 305]
 gi|134244856|gb|EBA44953.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 305]
          Length = 1270

 Score =  229 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 130/1012 (12%), Positives = 285/1012 (28%), Gaps = 156/1012 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452  RYTLAVNQRSTPAIVGACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317  QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                        WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504  TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
              I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564  SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--------- 484
                   L S  F      ++++     E + +    +  +  G                
Sbjct: 620  LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASGNGGGARAASAGAPAPSPA 679

Query: 485  -------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFL 533
                   ++       + +       +  + G  +  ++ ++    E      + L E  
Sbjct: 680  DADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELT 739

Query: 534  NFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  +     +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF   
Sbjct: 740  QARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPF 799

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                         +      +D+ G  +        +       +   +    E  RL+Y
Sbjct: 800  LNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVY 857

Query: 653  VGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            V +TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++   + W 
Sbjct: 858  VALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQ 917

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----- 765
            A           P+           + +  +      +   +   I + S++ +      
Sbjct: 918  ALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDE 977

Query: 766  --------------------------------------------GKTNLESLLSDNQTFN 781
                                                         +   + +L+  +   
Sbjct: 978  SGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAEDDILAFPRGAA 1037

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
             G  +H+LL++                  +          + L   +TRL+ +       
Sbjct: 1038 AGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELV 1097

Query: 836  ---MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQ 870
                +         +E+           + +                      + G ID 
Sbjct: 1098 PGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDM 1157

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1158 IVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1209


>gi|15837025|ref|NP_297713.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa 9a5c]
 gi|9105263|gb|AAF83233.1|AE003893_10 exodeoxyribonuclease V beta chain [Xylella fastidiosa 9a5c]
          Length = 1212

 Score =  229 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 141/979 (14%), Positives = 280/979 (28%), Gaps = 121/979 (12%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             + +  +    L  L   + + +   +  ++E G     KK+      +      ER+SL
Sbjct: 222  PDAALAVAETTLRHLWQTEGAALRSALHTALEEGVLN--KKSYKADALNDLWDWMERWSL 279

Query: 69   -------LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                   L     T      +    ++   ++P+    + ++   ++       T +   
Sbjct: 280  APNAYPELHPKLQTLTVAALQAGTNKQGAGRTPN--SPVSEAVQHYLDALTTIETARAQH 337

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                   L           K++  V  ++DLI +    L      A +R  + Q+    L
Sbjct: 338  RLRRLHRLRAAARLRLTALKRQRRVQTYDDLIQHVAQALDGPHRLALVRS-LRQQYRMAL 396

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT + QW +   +  D         +   LF +GD KQ+IY F G +    L   
Sbjct: 397  VDEFQDTDVAQWRIFHHVFGDTEHAHTADLT-PALFLIGDPKQAIYGFRGGDVHTYLA-- 453

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSS 300
                     A +      L  +FRS   +L  V+ +++   +A  L+   +   ++  + 
Sbjct: 454  --------AAARAERAPPLERNFRSRPLLLRAVEALYTQAGDAAFLTPGIAFHPVQPGTH 505

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI-GT 359
                  +         Q      P   +          +++ ++      + I   +   
Sbjct: 506  CRDTDLSNAGVPAPALQVWQAPPPLDSTAKGKPKPWNADAARALCTDACVHAIHQWLADA 565

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             T  +    R + A DI VLVR  ++  L+            I  V   +  L       
Sbjct: 566  QTGRALLDGRPVGAGDIAVLVRSHREATLMQQAL----ARAGIPAVAAGKRSLLTTDEAN 621

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            + +AL   +L   D+      L + L   + + I               + Q+ A     
Sbjct: 622  EALALLLALLHSADEGRLRTALSTVLVGLTAETIATF----DHDSVASRHWQRQALHWRE 677

Query: 480  KFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            +      +  + +L  +            +L    G ++  +         L E L    
Sbjct: 678  RLHSGGPLGLLTDLCALH--------AARLLSLFDGERRLSNYLQ------LGELLQQV- 722

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAH-------SANHNEVRIMTVHTAKGLESPVVFL 590
                     L  LI  L +     K           ++   V+I+T+H +KGLE P+VFL
Sbjct: 723  ---HLRALGLHGLIDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLVFL 779

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                         +   +  +            Q+              K+  + E  RL
Sbjct: 780  PYVAIGHSHAGPGRYCVVHDAQQGRCLHWCLDKQA----PEWQRAETAWKQEQRAEEARL 835

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYVG+TRA   L +   +    E+ +      D           V    +  +I      
Sbjct: 836  LYVGLTRAKHALWLATGTFYQTERTALWPLLGD-PQAVTAQPGIVFDTAVPPAILPRLTP 894

Query: 711  AYEWSTHHPENTPLEREET--------IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                S                      +     E                +     P   
Sbjct: 895  EQPHSVPPARTAQRALLSDWWVYSFTQLAHAKAEPAPDAGRRIAEPLTGGQDEPAWPQDA 954

Query: 763  DTKGKTNLESLLSDNQ-TFNRGLIIHKLLQVIFTLPEHKRK--------NFITSYCTKNA 813
              +     E            G+ +H++ +    L     +                   
Sbjct: 955  IQQSLPGSEVPADPRFIGIRFGVALHEVFERTDFLAWSTWRANAPVPATERAVLLHALRG 1014

Query: 814  KLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDIII 864
              + A++ +  +  +T L+ +           +    + +   E+     +     D ++
Sbjct: 1015 SGYVAEDVEAGVALLTPLVGHTLTSVLPEGVRLCDVPTTERRPEIEFQFVVQATAVDALL 1074

Query: 865  -------------------------SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP-- 897
                                     +G ID I       ++ +YK++        H+   
Sbjct: 1075 ALLHDHGLLQQRQSFGMRRRLEGLMTGMIDLIYRHAGRWYVLDYKSNRLPDYTPAHLSVA 1134

Query: 898  ---YTHIAQLSIYEKILKD 913
                 +  Q  IY   L  
Sbjct: 1135 MTNSEYDLQALIYTVALHR 1153


>gi|325124330|gb|ADY83853.1| exonuclease V, beta chain [Acinetobacter calcoaceticus PHEA-2]
          Length = 1226

 Score =  229 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 128/920 (13%), Positives = 267/920 (29%), Gaps = 138/920 (15%)

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
            L  +   +K               +++++         ++FN   ++        L   +
Sbjct: 305  LVDQKVFKKCPAEISDGFYQHPCIQQIQQLFGVLKNYAEQFNQLHIYLKAY----LCVEV 360

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                 +  +      F   I   ++ LK  +        +      IL+DE QDT+  Q 
Sbjct: 361  KKRLPQVLQNKGETTFSQQIRTLSEALKG-EQGQRFAVFVQARYPLILVDEFQDTNQDQD 419

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +++ S+                +  VGD KQ+IY F G +    L   +  Q +      
Sbjct: 420  DMLASIWR-----HPERYQKGCMIMVGDRKQAIYGFRGGDMLTFLNAYKDIQAKH----- 469

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                 +L  + RS AD++ VVD +F    +           +++   R G          
Sbjct: 470  -GREYKLIHNHRSVADLVDVVDALFQRQIDFGE-------EVQYDPIRAGT------RPH 515

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-----FSNGKK 368
             V    +  NP    W    D   +       A+++A+ I +++            + + 
Sbjct: 516  PVLIKQNNHNPHPLRWLMLKDKETE-------AQQVAWKIRDLLNQSHAGQLYFQKDAQT 568

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            + +   DI VL R            +F      I V    +  + D    +D+ AL   I
Sbjct: 569  QTLNEDDIAVLSRNHDGL----DKVQFELERLGIRVNRPSKRSVFDCTIAQDVGALLTAI 624

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L   D+      L S LF      + ++                            +   
Sbjct: 625  LHPYDEAKVKRALISRLFAMDLKQLLQLEQ------------------TAEGLSQFMTGF 666

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQ--NS 543
              +  +         +   L      Q  ++    +       L        ++ +  + 
Sbjct: 667  DTIRELWSAQGFLVAWQQCLIQFDIWQNLVAAQSKDNERVVVNLRHLTEILSQHSEKYSG 726

Query: 544  YSSLQELISELEQYPPTIKRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              +L     +    P           ++   V++MT+H +KGLE  +VFL+        +
Sbjct: 727  AQNLYHWYLKQLHSPLDRDWELERKLSSEAGVQLMTIHQSKGLEFKIVFLLGADKPFREN 786

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK--HLKKSTQEEYNRLLYVGMTRA 658
                       +  D    +        +    + I+    ++    E NRL YV +TRA
Sbjct: 787  NKTLNFSTQDIVKPDSNQTLTQRVVAIADKTYLNEIELKQHEERALAEQNRLWYVALTRA 846

Query: 659  SDQLIICKHSNTSNE-------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            S ++                  K   +   +    D    ++  + I LT   +  E  A
Sbjct: 847  SHRVYAVLQDLDGKSVSGLAFWKNRAEPFQHRCCTDEMVLEQIPQAIHLTKQTSIIEIQA 906

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNL 770
              +      +        + Q +  +     L S   + +     L+  +T +      +
Sbjct: 907  QRFPEQRFYSRGKTSFSYLAQHLKHKAGTDLLASQSNDAVLAEDELDLINTAEAISAQPI 966

Query: 771  ESLLS-DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS------------YCTKNAKLWP 817
            + + +   +    G  +H++ + I           I                +K  + +P
Sbjct: 967  DWIKNNFPRGTLAGNFLHEIFEHIDFQCSDDWVIEIRRRFKNDYSSLWQDLLSKYNESFP 1026

Query: 818  AKEYKN------LLLSITRLLENP-----MMTTAMSCDSYSEVSVSGKINCPK------- 859
             +E         +   +  +L  P      +         SE      ++          
Sbjct: 1027 EQEDAENLLYQSVADWLKHILRTPLYQGFRLNQLQQEQYLSEFPFYLALSDRVLAMTRIQ 1086

Query: 860  -----------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---- 898
                                 ++G ID +    Q   I +YK+++      ++       
Sbjct: 1087 QLFAEYGLNMPELLEARSARYLNGSIDLVYFDGQRYHIADYKSNYLGDDLADYRSDSIAQ 1146

Query: 899  -----THIAQLSIYEKILKD 913
                 ++  Q  +Y   L  
Sbjct: 1147 SMSLASYWLQAGLYLVALHR 1166


>gi|294102168|ref|YP_003554026.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261]
 gi|293617148|gb|ADE57302.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261]
          Length = 660

 Score =  229 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 101/597 (16%), Positives = 191/597 (31%), Gaps = 123/597 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +  ++   +DF+DL+I          V   +R +    ++ IL+DE QD +  
Sbjct: 173 EVYRKYHDELRRQNAVDFDDLLILPLH---LLMVDEKLREQEQSRLDWILVDEYQDVNKP 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ ++R L            +   +  VGD  QSIY + GA+   +L  ++         
Sbjct: 230 QYFLLRRLIG----------TKGNIMVVGDPDQSIYGWRGADMTMILNFEKDFPA----- 274

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST +IL   + V    E  +  +                     LW
Sbjct: 275 ---AKVVVLDQNYRSTGNILKAANAVIISNERRRKKN---------------------LW 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                            +                A  I   +  +               
Sbjct: 311 TARDMGEKIYVLLAPNEY--------------QEADFILSEMHRLHN---------FCGY 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D+ VL R    + +          +  +           D   IKD+++  R  ++ 
Sbjct: 348 RYGDMAVLYRINAMSRIYEQK----CIEKGVPYRVVRGTAFYDRKEIKDVLSFMRLAVNP 403

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQ-----RHETETVYEYIQKFANCGISKFQH--V 484
            D  S   +   P     +    K+          E E ++  +    + G++       
Sbjct: 404 LDGASLGRIANVPTRGIGKKSQEKLMEGLGAIPEMEAEQLWRAVADGKDLGLTGKAKIGA 463

Query: 485 IKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNE 540
           ++    + +I +   S HD    IL + +   Q          E ++ + E  +      
Sbjct: 464 MELGRHMFNIIKRSGSFHDVLLYILDSIEYEDQLKKDDPEGWEERVENIRELGSLV---- 519

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             S   L E+++E+  +          +   V  +T+H AKGLE PVVFLV     +F H
Sbjct: 520 -TSGGDLAEVLAEVALFTDLETTDMD-DLEAVNFLTLHAAKGLEFPVVFLVGLEEAIFPH 577

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                   + + EE  RL YVGMTRA +
Sbjct: 578 ----------------------------------FKCLEVQESLEEERRLCYVGMTRAEE 603

Query: 661 QLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +L +    +        ++    +   + D   N +   + + TN+    +   + W
Sbjct: 604 KLYMSGARSRRLFGTVFRNGLSRFLWEIPDGNKNVDDRGEEERTNAGFGSDRRRWGW 660


>gi|260885683|ref|ZP_05735545.2| ATP-dependent helicase [Prevotella tannerae ATCC 51259]
 gi|260851937|gb|EEX71806.1| ATP-dependent helicase [Prevotella tannerae ATCC 51259]
          Length = 1084

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 146/952 (15%), Positives = 300/952 (31%), Gaps = 108/952 (11%)

Query: 1    LKNRFGLSLNESY------ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ 54
            L+NR   +             + +    L     + I++   +S+E G     +      
Sbjct: 224  LRNRLNDAERMRRYRQTLRARLDEAQGALTGAAQNLIDELDDMSLE-GFSRKGQYVYAFA 282

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            +      +EE    + S+    +    KN+     + ++ ++  +L    D     R   
Sbjct: 283  RKLLNGDLEEPTKSVCSYIEDPQKLLNKNVTD---DGRAANVSSRLAALVDLLHDKRRTI 339

Query: 115  NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRY 171
             + ++    L  L L   + A  +   K N       L+  T  L  +      + ++  
Sbjct: 340  LSCRLILKNLNQLFLLNAVAAALDLVNKANSRF----LLAKTKLLFHEMVGEQDAPFVFE 395

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            +   ++ HILIDE QDT+ +QW  I+SL  +            T   VGD KQSIY ++G
Sbjct: 396  RAGAQLRHILIDEFQDTARLQWNNIKSLLLNNLA------EGNTCLLVGDVKQSIYRWNG 449

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF-SIPENAQGLSED 290
             +   +   ++              +  L  ++RS   I+   +  F +  +    L  D
Sbjct: 450  GDWNILQNIEKEYPA--------ARVNSLRENYRSGQHIIDFNNAFFPAAAQMLDRLETD 501

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR-I 349
             T    H            L +              + + S      +       A   +
Sbjct: 502  ETDAAAHL-----------LQDIYADVSQVCPRKTADGYVSVTLHDAETDVLDAEAEASL 550

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
               I  +  T           +   D+ +LVR+ K+   I    RF +    + +   + 
Sbjct: 551  YQQIQMLRQTG----------VAYTDMAILVRRNKEAQAIAE--RFAEQHLDVPLASAEA 598

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
            F+L+    ++ L++  R ++ ++D LS                         E   + + 
Sbjct: 599  FLLSASPVVQLLISALRCLMDEKDTLSQA-----------IATRIYCNHILTENRPMSDI 647

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL-ILGAKKGRQQFISRFGNEVIDV 528
             +  +    + F      + E           +     IL    GR         E    
Sbjct: 648  AETGSTLLPAAFVRRRAALAE-------MPLFELVEQLILFFTTGRSDERIDISGES-AY 699

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            +  FL+  L     + SS++  ++  ++         +A  + +RI+T+H +KGL    V
Sbjct: 700  ITAFLDQVLAFLDENPSSIEAFLNFWDEEAAAKTIPSTAV-DGIRILTIHKSKGLAFHTV 758

Query: 589  FLVDTGSQVFS----HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             +      +F+     +    +H   S  D+           +  +I     +      +
Sbjct: 759  LIPFCDWDIFNTKQGSRSTLWVHPQESPYDELPTLPIEQNKAAAQSIFQTEYEQELLMQK 818

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             +     YV  TR    L+I  +   ++ K +            F +D   +   L    
Sbjct: 819  VDGFNAAYVAFTRPKKNLLIWANVPPASNKPTFGSVIASFADPDFASDADSEDAAL---- 874

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                     W    P  T  ++    +   D +          +         N S    
Sbjct: 875  -----SIKTWGAVVPSQTAGKQAAEAQNPFDAKAEAVPFHFTPQPVRAIFKQSNKS--KD 927

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
              +T  +         +RG   H+LL  I T+     ++   ++     +          
Sbjct: 928  FVRTEADPDDLQQSYIDRGKRFHRLLSDIDTV-----EDLPRAFENLRREGLSGPNDAED 982

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
            L  + + L +  ++          +     I     + +   R D++ +  +   + ++K
Sbjct: 983  LAFLRKRLMDAKVSRWFDGSWQ--LFNEHTILSRNNNQLSRHRPDRVLVKDKQAVVIDFK 1040

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
                          +H  Q+  Y  +L+     +S+   L YV + KV  I 
Sbjct: 1041 FGAP--------AASHAPQVKTYMHLLQTM-GYESVTGWLWYVYQNKVESIS 1083


>gi|168205452|ref|ZP_02631457.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens E
           str. JGS1987]
 gi|170662992|gb|EDT15675.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens E
           str. JGS1987]
          Length = 664

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 99/556 (17%), Positives = 177/556 (31%), Gaps = 117/556 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +       YE  K +  +LDF+DL I    LLK+      I       I +IL+DE Q
Sbjct: 149 YDIFNKCYEAYETFKNERGLLDFDDLQIKAVTLLKENPH---ILGYYRNLIKYILVDEFQ 205

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D   +Q E +R +                +F VGDE QSIYSF GA PK ++  +   + 
Sbjct: 206 DCDEVQLEFLRLI-------------NNEVFCVGDEDQSIYSFRGATPKCMINFEENFE- 251

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RS  +I+ V   V    +        +              G
Sbjct: 252 -------GSEKVYLKYNYRSLKNIVEVSKDVIKHNKERYQKEIIAFN---------ENQG 295

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++L +      +                          A  IA  I             
Sbjct: 296 KIELKKPFNESEE--------------------------ANIIALKIEESKRLGN----- 324

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALG 425
                +  D  +L R   ++              KI     D+     +H   +DL+A  
Sbjct: 325 -----KYSDNAILYRTNMESRSFIDAF----IRKKIPFKLLDKEYNFFNHFICRDLIAYL 375

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  +   +   F  ++  P    S+  I+ +   +   E V++ +         + +   
Sbjct: 376 RLSIDPFNKEDFNKIINKPFRYVSKSAIYGVMNSKKR-ENVFDILMNVEGVHPFQMRKF- 433

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--S 543
           + +   I      S +     IL   +   Q+I  + ++     ++ L+     + +   
Sbjct: 434 EELKSDIAYLNKLSLNSAIDFILSDLEY-SQYIREYSSKFKQNQEDLLDIVEEFKSSAME 492

Query: 544 YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + S+   +S +E             N + V + T+H  KG++   V +V+   +   HK+
Sbjct: 493 FKSIITFLSHIESVEENLENLNSKGNIDSVILSTMHGVKGMQFNDVHIVNIVDETIPHKN 552

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YVG+TRA + L
Sbjct: 553 S-------------------------------------MENLEEERRLFYVGITRAINNL 575

Query: 663 IICKHSNTSNEKKSNQ 678
            +    +   + K   
Sbjct: 576 YLYAPKSVRGKFKDPS 591


>gi|53718918|ref|YP_107904.1| putative exodeoxyribonuclease V subunit beta [Burkholderia
            pseudomallei K96243]
 gi|52209332|emb|CAH35277.1| putative exodeoxyribonuclease V beta chain [Burkholderia pseudomallei
            K96243]
          Length = 1270

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 130/1012 (12%), Positives = 285/1012 (28%), Gaps = 156/1012 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452  RYTLAVNQRSTPAIVGACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317  QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                        WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504  TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
              I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564  SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--------- 484
                   L S  F      ++++     E + +    +  +  G                
Sbjct: 620  LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASGNGGGARAASAGAPAPSPA 679

Query: 485  -------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFL 533
                   ++       + +       +  + G  +  ++ ++    E      + L E  
Sbjct: 680  DADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELT 739

Query: 534  NFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  +     +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF   
Sbjct: 740  QARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPF 799

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                         +      +D+ G  +        +       +   +    E  RL+Y
Sbjct: 800  LNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVY 857

Query: 653  VGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            V +TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++   + W 
Sbjct: 858  VALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQ 917

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----- 765
            A           P+           + +  +      +   +   I + S++ +      
Sbjct: 918  ALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDE 977

Query: 766  --------------------------------------------GKTNLESLLSDNQTFN 781
                                                         +   + +L+  +   
Sbjct: 978  SGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAEDDILAFPRGAA 1037

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
             G  +H+LL++                  +          + L   +TRL+ +       
Sbjct: 1038 AGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELV 1097

Query: 836  ---MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQ 870
                +         +E+           + +                      + G ID 
Sbjct: 1098 PGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDM 1157

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1158 IVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1209


>gi|324323717|gb|ADY24761.1| helicase, UvrD/Rep family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 719

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 105/555 (18%), Positives = 199/555 (35%), Gaps = 102/555 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE K  N  +DF+D+++ T  LL +      +   +  +  HIL+DE QD SL+Q
Sbjct: 241 IYHSYEEWKADNNQMDFDDILLYTYQLLLED---YQLLELLQNKFLHILVDEYQDISLLQ 297

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +++ L              + +F VGD+ Q+IYSF G++PK +L              
Sbjct: 298 QMIVKMLA----------YPQKLIFGVGDDGQTIYSFRGSDPKLILDFPNEYP------- 340

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +I+L +++RS   I+ + + V    +               R+ ++     +    
Sbjct: 341 -GAKVIKLEVNYRSNPYIVGLGNAVIKNNKVQFKKE--------LRAFKVDGPKPI---- 387

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           ++S  DS  +       A  I  +I + I ++T          Q
Sbjct: 388 ----------------YSSPADSDEE-------AINIVQSIKSAIKSETR---------Q 415

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVV-GNDRFILTDHLAIKDLMALGRFILSQ 431
            KDI VL R    +  I            I  V   ++    ++  ++ ++   R  L+ 
Sbjct: 416 FKDIAVLYRTHAVSRAIVEQL----VLNDIPYVQYGNKDTFYENTYVRPIIGFLRLALNP 471

Query: 432 EDDLSFVCMLK----SPLFNFSE-DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            D+ +   +      S     S  +    +     + + +  Y+         + Q +I 
Sbjct: 472 TDEEAIKEICNVLYISKEKAISHINRASALDYIDEKVKPLLYYLTSIPELKKYQLQFIIG 531

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR---NEQNS 543
            I  L  +A   +P      I     G ++++       + +  E +   L         
Sbjct: 532 VIKNLKGLA-RLNPALAVEEIRHGYIGYEKYLQNNKRGSLTIHQELVKEVLDELTASSKK 590

Query: 544 YSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +  +   ++ +++     K+        N + V + T+H++KGLE P VFL+     V  
Sbjct: 591 FKDIASFLNFIDKVILRNKQMEELQKQQNPDAVALHTIHSSKGLEFPTVFLIGVSEGVLP 650

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           HK   ++                             +    + + EE  RL YVG+TRA 
Sbjct: 651 HKSALEV-------------------MEDRITNKKEMLMKLQESLEEERRLAYVGITRAE 691

Query: 660 DQLIICKHSNTSNEK 674
            +L I       N+ 
Sbjct: 692 SELFISSPKVVRNQS 706


>gi|260550543|ref|ZP_05824753.1| ATP-dependent exoDNAse beta subunit [Acinetobacter sp. RUH2624]
 gi|260406458|gb|EEW99940.1| ATP-dependent exoDNAse beta subunit [Acinetobacter sp. RUH2624]
          Length = 1232

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 124/951 (13%), Positives = 268/951 (28%), Gaps = 144/951 (15%)

Query: 49   KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD------LKEKLKK 102
              Q L+Q+      +   ++                + ++   +  D        +++++
Sbjct: 280  LLQVLKQSDSILVFDGSLAVQRELIFKFLGQLADQKVFKKCPAEISDGFYQHPCIQQIQQ 339

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                     ++F+   ++        L   +     +  +      F   I   ++ LK 
Sbjct: 340  LFGVLKNYAEQFDQLHIYLKAY----LCVEVKKRLPQVLQNKGETTFSQQIRTLSEALKG 395

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
             +        +      IL+DE QDT+  Q +++ S+                +  VGD 
Sbjct: 396  -EQGQRFAVFVQARYPLILVDEFQDTNQDQDDMLASIWR-----HPERYQKGCMIMVGDR 449

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQ+IY F G +    L   +  Q +           +L  + RS AD++ VVD +F    
Sbjct: 450  KQAIYGFRGGDMLTFLNAYKDIQAKH------GREYKLIHNHRSVADLVEVVDALFQRQI 503

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
            +           +++   R G           V    +Q NP    W    D   +    
Sbjct: 504  DFGE-------QVQYDPIRAGT------RPHPVLIDQNQPNPHPLRWLMLKDKETE---- 546

Query: 343  SILARRIAYTISNMIGTDTI-----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
               A+++A+ I +++            + + +++   DI VL R            +F  
Sbjct: 547  ---AQQVAWKIRDLLNQSHAGQLYFQKDAQTQILNEDDIAVLSRNHDGL----DKVQFEL 599

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                I V    +  + D    +D+ AL   IL   D+      L S LF      + ++ 
Sbjct: 600  ERLGIRVNRPSKRSVFDCTIAQDVGALLTAILHPYDEAKVKRALISRLFAMDLKQLLQLE 659

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                                       +     +  +         +   L      +  
Sbjct: 660  Q------------------TAEGLSQFMTGFDAIRELWSAQGFLVAWQQCLNQFVIWKNL 701

Query: 518  ISRFGNEVID---VLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHS---ANH 569
            ++    +       L        ++ +      +L     +  Q P   +       ++ 
Sbjct: 702  VAVQSKDNERVVVNLRHLTEILSQHSEKYQGAQNLYHWYLKQLQSPLDREWELERRLSSE 761

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              V++MT+H +KGLE  +VFL+        +              +    +        +
Sbjct: 762  AGVQLMTIHQSKGLEFKIVFLLGADKPFRENNKTLNFSTQDITVPESAQTLTQRVVAIAD 821

Query: 630  NIV--SDLIKHLKKSTQEEYNRLLYVGMTRASDQLI--ICKHSNTSNEKKSNQRTWYDMV 685
                    +K  ++    E NRL YV +TRAS ++   +      S    +  +   +  
Sbjct: 822  KTYLNETELKQHEERALAEQNRLWYVALTRASHRVYALLQDTDGKSVSGLAFWKNRAEPF 881

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                  DE + +               E    H  +               Q +  K+ +
Sbjct: 882  QHRCCTDEIILEQPPAARHLNQNINIIEIQAQHFPDQRFYSRGKTSFSYLAQHLRHKVGT 941

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLS-------DNQTFNRGLIIHKLLQVIFTLPE 798
             +    +   +L    +D        +            +    G  +H++ + I     
Sbjct: 942  DLLASQSHEAVLAEDELDQVISVEAPAAQPISWIKSNFPRGTLAGNFLHEIFEHIDFQCS 1001

Query: 799  HKRKNFITSYCTKNAKLWP-------------AKEYK-----NLLLSITRLLENP----- 835
             +  + I      +                   +E +      +   +  +L  P     
Sbjct: 1002 DEWVSEIRRRFKNDYSSLWQDLLIKYQESFPEEQEAEYSLYHAVAEWLQEILSTPLYQGF 1061

Query: 836  MMTTAMSCDSYSEVSVSGKINCPK------------------------KDIIISGRIDQI 871
             +         SE      ++                               ++G ID +
Sbjct: 1062 RLNQLQPEHYLSECPFYLALSDRVLAMKRIHQLFAEYGMEMPELLEARSARYLNGSIDLV 1121

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
                Q   I +YK+++      ++            ++  Q  +Y   L  
Sbjct: 1122 YFDGQRYHIADYKSNYLGENLADYSVESIAQSMSLASYWLQAGLYLVALHR 1172


>gi|313887113|ref|ZP_07820809.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923342|gb|EFR34155.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 1123

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 148/929 (15%), Positives = 298/929 (32%), Gaps = 86/929 (9%)

Query: 37   LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            L+  T                     ++    L             +  T+ I       
Sbjct: 252  LTRLTDTTKDEPTIGATSSYITATTWDKYLKNL------DVTEALDDRYTKGIED----- 300

Query: 97   KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
               L       +++     T +        L L   +  +  +  ++  +   +D     
Sbjct: 301  -SPLISIFQTILRLYTDLFTLRTAIRNGYELQLLGEIQENVYKVSEELGITLLDDAKRLI 359

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
              L+     +A+I  ++  ++ H +IDE QDTS  Q+E    L E+             +
Sbjct: 360  RTLVSGEGSTAFIYERLGTKLTHHMIDEFQDTSRFQYENFVPLLEEALSSSG------EI 413

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F VGD KQSIY F  ++P   +  +    K      +    + LP ++RS   I++  ++
Sbjct: 414  FIVGDVKQSIYRFRNSDP---MLLQNDLSKDFP---KDQQTLNLPNNWRSAPAIVSFNNR 467

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV--QLWEQVVSQHDSQCNPQQESWTSYFD 334
             FS+   A  L  +S+  I+           V      ++      Q     E       
Sbjct: 468  FFSLLPYASELKLESSNLIQKVYDPEEVHQEVPDPNQNKIGGVFIHQWEKTPEISQPTAA 527

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT- 393
            +   +++ +    ++   I+ ++    +  + ++R  +  DI +L         I     
Sbjct: 528  TEEDDNAETTPPSQLQTKINYLLRH--VIPSIRERGYKLSDIAILTPNNDTLQRIAQAII 585

Query: 394  ---RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
               + L+ND   +        ++  +   D   L R I+          +++S L N   
Sbjct: 586  LYNKELENDKDKNQHLQPLAFVSREMLSLDANPLYRLIV---------EIMQSVLVNVGA 636

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             +     +  H     +      +    S        +          S ++   LI+  
Sbjct: 637  SEELYSKSFEHRLAVTHYAELARSLSDSSAL-----DLARCYQEGLSASLYELTLLIVE- 690

Query: 511  KKGRQQFISRFGNEVID-VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
                   +           +D  L+      Q++Y  LQ  +  LE + P +        
Sbjct: 691  ------IVRPLITSADQSYIDALLDTVQDYSQDNYVDLQGFLEWLETHTPRLSL---ETQ 741

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH----------IMPSLNDDPGIP 619
            + ++++T+H+AKGL  PVV L++   ++  H                 ++    + P + 
Sbjct: 742  DALQLLTIHSAKGLGFPVVCLLEYQMRLLEHTDTIWCRDEEIMAELHKLLGGNVEIPTLL 801

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD--QLIICKHSNTSNEKKSN 677
               P  ++R+ +  + I   +     +     YV MTRA     LI+ ++   S    + 
Sbjct: 802  PISPTKEARSTLFREKIVAEEHLALLDRINAFYVAMTRAKSEMHLILSENKGQSGTSINF 861

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
            +R   ++V      D   K   L+      +    + S                      
Sbjct: 862  ERLISELVTQIQEPDHNQKPDLLSQETIDLQCSELKVSPSEDAEIKQRIFYYQTDPTTAP 921

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL-SDNQTFNRGLIIHKLLQVIFTL 796
              P    S     ++ P       +        +S+          GL +H LL  I  L
Sbjct: 922  PKPTTPSSDTSQLVSIPGREQIGALAQLRVRRSQSVSYQAQDAVRNGLFLHALLSEIDYL 981

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS---G 853
               +    +   C +   L P  +   L   + + L +P +       S  +V       
Sbjct: 982  EHDELLKLLDMKCLQ--GLIPQDQRDALAKLLEQALTDPKIAEYYDRSSGWQVINERSIV 1039

Query: 854  KINCPKKDIIISGRI---DQISISQQ-NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
            +++   +      RI   D+I   ++    I +YK+      E +     H  QL  Y K
Sbjct: 1040 RLSQDTESGTRQARIERPDRILYDEEQQAVIIDYKSG----GEAQQYTERHKRQLRGYRK 1095

Query: 910  ILKDSYPNKSLVCLLIYVSEP--KVFIIP 936
             L +    K +   L+Y+S     +  + 
Sbjct: 1096 ALLE-SGFKRVCAYLLYLSADGHHIVEVD 1123


>gi|116202273|ref|XP_001226948.1| hypothetical protein CHGG_09021 [Chaetomium globosum CBS 148.51]
 gi|88177539|gb|EAQ85007.1| hypothetical protein CHGG_09021 [Chaetomium globosum CBS 148.51]
          Length = 973

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 106/663 (15%), Positives = 192/663 (28%), Gaps = 158/663 (23%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
           ++         + +   +    L   +     Y++  + + +LD++DL++N   LL+K  
Sbjct: 151 EKVKGSEATSKSARQESNKPTGLRELETCFDEYQKHLETSNLLDYDDLLVNCVRLLRKFP 210

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                       I  +LIDE QDT+ IQ+++++   +            + +  VGD  Q
Sbjct: 211 SCV-------SNIQTVLIDEYQDTNGIQYDLMKLFAQH----------RQRITTVGDPDQ 253

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY +  AE K + +  R   K           + L  ++RS+  IL +  +V    +  
Sbjct: 254 SIYGWRSAEIKNLWKMLREFPKTDE--------VSLEENYRSSQSILDLSLEVIQQDQAR 305

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                  T     R                                     L +  SAS 
Sbjct: 306 YQKVLKPTHNKGPRPV-----------------------------------LRRLKSASA 330

Query: 345 LARRIAYTISN-MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
            A  I   +   ++ + ++        ++  D+ +LVR    +  I            + 
Sbjct: 331 EADWIVSEVRRVLVMSGSM--------LRHNDVAILVRSAALSRHIEASL----GKAGVP 378

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHE 462
                     +   IK ++   R I   E++ +   +L  P      D I   +      
Sbjct: 379 YRMVGGLKFYERAEIKVIIEYLRAIHQPENNDALARILNVPQRGIGPDTIKALLEEAETS 438

Query: 463 TETVYEYIQKFANCGISK---------------FQHVIKYIHELIHIAQFCSPH---DFF 504
           + +V++ + K                          +++ I + I  A   +P    +  
Sbjct: 439 SLSVWDVLSKHCRGDRRAKTKITKQAEQRVSGGLLRLLQDIRKRIADASESAPFGLVEMI 498

Query: 505 TLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRNEQNSYSS------------- 546
             +L      +             +    + EFL+           S             
Sbjct: 499 QHLLTKLNFEKYLQGSYPDPDDHAQRWANVQEFLSLAGEFAHELELSDEESLPEIEGLAQ 558

Query: 547 ------LQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 L   ++ +     T   A     N  V I T+H AKGLE P+VF+         
Sbjct: 559 TKEDGVLPRFLANVSLASETQTGADGQESNPPVTISTIHAAKGLEWPIVFIPAVYDGSIP 618

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H                                      ++    +E  RLLYV MTRA 
Sbjct: 619 H--------------------------------------MRSDDGDEERRLLYVAMTRAQ 640

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
             L +      SN             +        + K    +     E          P
Sbjct: 641 SLLYLSCPLFASNGHGERHELSP---FVDPVKASFMPKGPCLDRPVMTEIARILRRELPP 697

Query: 720 ENT 722
           E T
Sbjct: 698 EET 700


>gi|168213114|ref|ZP_02638739.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           CPE str. F4969]
 gi|170715337|gb|EDT27519.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           CPE str. F4969]
          Length = 664

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 99/556 (17%), Positives = 178/556 (32%), Gaps = 117/556 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +       YE  K +  +LDF+DL I    LLK+      I       I +IL+DE Q
Sbjct: 149 YDIFNKCYEAYETFKNERGLLDFDDLQIKAVTLLKENPH---ILGYYRNLIKYILVDEFQ 205

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D   +Q E +R +                +F VGDE QSIYSF GA PK ++  +   + 
Sbjct: 206 DCDEVQLEFLRLI-------------NNEVFCVGDEDQSIYSFRGATPKCMINFEENFE- 251

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RS  +I+ V   V    +        +              G
Sbjct: 252 -------GSEKVYLKYNYRSLKNIVEVSKDVIKHNKERYQKEIIAFN---------ENQG 295

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++L +      +                          A  IA  I             
Sbjct: 296 KIELKKPFNESEE--------------------------ANIIALKIEESKRLGN----- 324

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALG 425
                +  D  +L R   ++              KI     D+     +H   +DL+A  
Sbjct: 325 -----KYSDTAILYRTNMESRSFIDAF----IRKKIPFKLLDKEYNFFNHFICRDLIAYL 375

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  +   +   F  ++  P    S+  I+ +   + + E V++ +         + +   
Sbjct: 376 RLSIDPFNKEDFNKIINKPFRYVSKSSIYGVMNSKKK-ENVFDILMNVEGVHPFQMRKF- 433

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--S 543
           + +   I      S +     IL   +   Q+I  + ++     ++ L+     + +   
Sbjct: 434 EELKSDIAYLNKLSLNSAIDFILSDLEY-SQYIREYSSKFKQNQEDLLDIVEEFKSSAME 492

Query: 544 YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + S+   +S +E             N + V + T+H  KG++   V +V+   +   HK+
Sbjct: 493 FKSIITFLSHIESVEENLENLNSKGNIDSVILSTMHGVKGMQFNDVHIVNIVDETIPHKN 552

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YVG+TRA + L
Sbjct: 553 S-------------------------------------MENLEEERRLFYVGITRAINNL 575

Query: 663 IICKHSNTSNEKKSNQ 678
            +    +   + K   
Sbjct: 576 YLYAPKSVRGKFKDPS 591


>gi|330816107|ref|YP_004359812.1| Exodeoxyribonuclease V, beta subunit [Burkholderia gladioli BSR3]
 gi|327368500|gb|AEA59856.1| Exodeoxyribonuclease V, beta subunit [Burkholderia gladioli BSR3]
          Length = 1248

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 128/981 (13%), Positives = 267/981 (27%), Gaps = 131/981 (13%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
            LW      ++ + +    S+   +      A  L         E   +L  +        
Sbjct: 251  LWQAERAAIASVLELAQASLNQRSHKPEAVADALAAWGAYFN-EAAGALAPAALPKPALK 309

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
              + ++ +   K     +    ++ +            +  +             A   E
Sbjct: 310  LTRGVLEKATKKGGATPEHPFFEAAEALEAALAAAEAAQRARWLALIADWLAEAPARLAE 369

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K+   V+ F+DL+ N    L+      W+   + +     LIDE QDT  +Q+ +   +
Sbjct: 370  KKRTRRVVSFDDLLANLYHALEAHP---WLADTLRRRYPAALIDEFQDTDPLQFAIFDRI 426

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                            LF VGD KQ+IYSF  A+    L  +              +   
Sbjct: 427  FA----------PAGPLFLVGDPKQAIYSFRAADLHTYLAARER----------AGARYT 466

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L ++ RST  I+   ++VF     A  L       +R         GT Q    V     
Sbjct: 467  LAVNQRSTPAIVEACNRVFGANPRAFVLDGLDYQPVR--------AGTRQRAPFVDGTDP 518

Query: 320  SQCNPQQESWTSYFDSLP---QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
               +     W           +++         A     M G         +  +   DI
Sbjct: 519  RAGSGDFRIWMLPDGDQALGKRDAQWQAAQACAAEIARLMRGAREGAVRLGEAALTPADI 578

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             VLV+  +   ++  +       + I  V   +  +   L  + L  +   I +  D   
Sbjct: 579  AVLVQTHRQGSIVKRVLAA----WGIGSVELAQASVFATLDAEQLERVLAAIDAPGDLRR 634

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-CGISKFQHVIKYIHELIHIA 495
                L +  F      ++++           +     +     S+++ + +     +   
Sbjct: 635  LRAALATDWFGLDAAALWRLEQGEAAPGAAADDADAMSWVERFSRYRLLWRERGFAVMWR 694

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
             F         ++G   G ++            L E        +     +L+ L ++  
Sbjct: 695  SFARELRIAERLIGGADGERRVTDIN------HLAELTQARASAQPGIAPTLRWLAAQRA 748

Query: 556  QYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   +    ++ N V+I+TVH +KGLE  VVF                +      +D
Sbjct: 749  VGGGEDAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGRLHEPREDALPDAREYHD 808

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSN 672
            + G  +                   ++    E  RL+YV +TRA  +  +    + +  +
Sbjct: 809  EAGAAVLHYGC--DEAAAELAATQARREQAAERARLVYVALTRAVHRCYLVAGVYQSARS 866

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             +++ +     +V  + H  +   +           W A           P     T   
Sbjct: 867  TREARRSVLNWLVGGAGHGFDAWLETPPEAEELAASWRALATGPISIAPLPGVSARTPLA 926

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTI------------------------------ 762
               + +         +   +   I + S++                              
Sbjct: 927  AGHDAERLGGARQAARFLRDAWRIASFSSLTASIAREQEGIAAVPDEALRPDHDALAAAV 986

Query: 763  ----------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
                      +   + + + ++   +    G  +H L ++                  + 
Sbjct: 987  DPVPRIDGGGERAMQPDPDDIVGFPRGAAAGECLHLLFELSDFGDASGWDEAARRALHER 1046

Query: 813  AKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII 863
                  +  K L   +TR+L             +         +E+             +
Sbjct: 1047 PVEAEPELAKRLPAMMTRMLAEVVATELVPGMRLAAIDPGRRLNEMEFLFPAAALDFAAL 1106

Query: 864  ----------------------ISGRIDQISISQQNIFIFEYKTHH---------HVPQE 892
                                    G ID I        I ++K++H             +
Sbjct: 1107 RALLVEHGYPDVALESGTLAGFFKGFIDMIVEHDGRFLIVDWKSNHLGATPDAYGPAALD 1166

Query: 893  IEHIPYTHIAQLSIYEKILKD 913
                 + +  Q  +Y   L  
Sbjct: 1167 AAMADHAYHLQALLYTVALHR 1187


>gi|42522842|ref|NP_968222.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
 gi|39574038|emb|CAE79215.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100]
          Length = 672

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 104/597 (17%), Positives = 184/597 (30%), Gaps = 121/597 (20%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             + + L   + +  +   V+DFE L+I    L K+      I  K+      +++DE Q
Sbjct: 162 HEMVEVLTPKFTKRLEHLGVVDFEGLLIKPITLFKENPE---ILEKVQGMFTQVMVDEFQ 218

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q ++I  + +          S   +  VGD+ QSIY + GAE K +L   +    
Sbjct: 219 DTNRLQMDLIAQIVK----------SHNNIAVVGDDDQSIYGWRGAEVKNILNFPQEF-- 266

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RS+A+IL V +   S  +N  G                    
Sbjct: 267 ------TPCEVIKLERNYRSSAEILAVANAAISKNKNRHGKILRPQ-------------- 306

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                       D+   P+        D              +   I N           
Sbjct: 307 ---------VAEDTGQLPELFILDREEDEC----------EFVVTEILNFQRQG------ 341

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                  KD+ VL R      LI    R       +    +    + D   IKDLMA  +
Sbjct: 342 ----YSYKDMAVLYRSNTQGGLIESSLR----RANVPYHISGGTSIFDRREIKDLMAYLK 393

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANC-GISKFQHV 484
             L+   ++S   ++  P     +  I K+      +     +  + +       K    
Sbjct: 394 QALAPN-EVSLRRIINVPSRGIGDTSIEKLSEFALKKRINFVDACRFWQEAGVQDKAGAA 452

Query: 485 IKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQF----ISRFGNEVIDVLDEF 532
           I  +   I              SP      I      R+            E   ++ E 
Sbjct: 453 IDDLMMFIENLPKNILDFQVGSSPGAKMVQIFQDIGYREYVYGTAADPTSAEKKWMVVEI 512

Query: 533 LNFTLR-NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           L   L          ++ + S ++        +     N+V++MT+H +KGLE PVV L 
Sbjct: 513 LGRILDSFLGRRSYDVENIKSFVDCMLLRDDLSEEELENKVQLMTLHASKGLEFPVVILA 572

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +  HK++                                         +E  RL 
Sbjct: 573 GLEEDLLPHKNLGS-------------------------------------DIDEERRLF 595

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           YVG+TRA  +L++ +                  + +          +     + ++ 
Sbjct: 596 YVGVTRAKKRLVMSRCQQRKKNGAVRPVAPSRFLLELPKELYTEFPLGARPVVGQER 652


>gi|160878380|ref|YP_001557348.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
 gi|160427046|gb|ABX40609.1| UvrD/REP helicase [Clostridium phytofermentans ISDg]
          Length = 666

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 98/573 (17%), Positives = 179/573 (31%), Gaps = 121/573 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y++  +    +DF+D+++   +LL        I     Q+  +ILIDE QD + 
Sbjct: 162 QEIYKEYDKKLRHQNKIDFDDMLLLCYELL---IERPDILSLWQQKYQYILIDEFQDINR 218

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+E+I+ L +              LF VGD+ QSIY F GA+P+ +L  +         
Sbjct: 219 IQYEIIKMLAK----------PKNNLFIVGDDDQSIYRFRGAKPEIMLSFEEEY------ 262

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +    + L  ++RS  +I+T   KV    +        S                   
Sbjct: 263 --KGVKKVVLNKNYRSKGNIITGALKVVGNNKKRFPKEIQSIH----------------- 303

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                          + +  S+ D   Q        + I   I +               
Sbjct: 304 -----------EPGNEINVKSFSDLPAQN-------QAILEEIDHYRKMG---------- 335

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFIL 429
           ++   I VL R                 +Y I     D    + +H   KDL+   +  +
Sbjct: 336 MRYSQIAVLYRTNTQPGS----LVTKLMEYNIPFKMRDSLPNIYEHWIAKDLICYIKLSM 391

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              +   F+ ++  P    S + + +     +          +            I  + 
Sbjct: 392 GIRERGLFLQVMNRPKRYISREALEQTDVDLN--------TIREFYMEKPYVVERIDKLV 443

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG------NEVIDVLDEFLNFTLRNEQNS 543
             + + +  +P+     I  A                   E+ D+L E    +    +  
Sbjct: 444 YDLTLIRRTNPYAAINYIRRAVGYDDYLKEYAAFRRIKVEELYDILSELQEESREY-KTH 502

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
              L  +    +       + +  + + V + T H +KGLE  VV L+D    +  H   
Sbjct: 503 EEWLNHIDEYKDGLKEQALKQNQKDVDGVILTTFHASKGLEFDVVILMDANEGITPH--- 559

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                            K +     EE  R+ YV MTRA   L 
Sbjct: 560 --------------------------------KKAVVPEDMEEERRMFYVAMTRAKSFLH 587

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
           I       N++ S  R   +++       E ++
Sbjct: 588 IFYVKQRYNKELSPSRFVGELLVSPMELREGMR 620


>gi|206900797|ref|YP_002250463.1| ATP-dependent DNA helicase [Dictyoglomus thermophilum H-6-12]
 gi|206739900|gb|ACI18958.1| ATP-dependent DNA helicase [Dictyoglomus thermophilum H-6-12]
          Length = 656

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 93/555 (16%), Positives = 186/555 (33%), Gaps = 125/555 (22%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + + + +   YE+ K++  VLD++DL+     LL + + +  I         +IL+DE Q
Sbjct: 189 IEIVQKVFERYEKRKRELNVLDYDDLLFFWYRLLLESEKTRKILN---DRFLYILVDEYQ 245

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q E+IR           T    + +  VGD+ QSIYSF GA  + +L    I   
Sbjct: 246 DTNWLQGEIIRL----------TREENKNILVVGDDAQSIYSFRGATIENILSFPEIFP- 294

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     I  L  ++RST +I+ + +++                             
Sbjct: 295 -------GTRIFYLVFNYRSTPEIINLANEIIKRNTRQYFK------------------- 328

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             ++   + S    +    ++                  A+ +   I  +          
Sbjct: 329 --EIKPVLKSGSKPKLVWVRDD--------------EEEAQFVVEVIKELHKEG------ 366

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               ++ KDI VL R    +  +            I           +   IKD+++L +
Sbjct: 367 ----VKYKDIGVLFRSNYHSMAVQMEL----TLQGIPYEVRGGLRFFEQAHIKDMISLLK 418

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            + + +D++S     K            K+     E++   ++ + F      +    ++
Sbjct: 419 ILFNPQDEISAQRFFK-LFPGIGRAYAKKLSQVLKESK---DFDKIFQMQFSGRTLEGLR 474

Query: 487 YIHELIHIAQFCSPHDFFTLILGAK--KGRQQFISRFGN---EVIDVLDEFLNFTLRNEQ 541
            +  +    +     +F + IL     +  + ++ R      +    +D+ +  + R + 
Sbjct: 475 ILKNIWDKIKVIPVQNF-SEILRVFFNEYYKDYLERNYPDFKDREKDVDQLILLSERYD- 532

Query: 542 NSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                L++ +SEL         +        + V + T+H AKGLE   VF++      F
Sbjct: 533 ----DLEKFLSELTLYTYAGEKLLEEEEEEKDFVVLSTIHQAKGLEWHAVFILRLVQGDF 588

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                  +      EE  RL YV +TRA
Sbjct: 589 PS-------------------------------------YKSMDNIEEERRLFYVAVTRA 611

Query: 659 SDQLIICKHSNTSNE 673
             +L +  +     +
Sbjct: 612 KRELYVITYLTRKVK 626


>gi|71274634|ref|ZP_00650922.1| UvrD/REP helicase [Xylella fastidiosa Dixon]
 gi|71899654|ref|ZP_00681808.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
 gi|71164366|gb|EAO14080.1| UvrD/REP helicase [Xylella fastidiosa Dixon]
 gi|71730606|gb|EAO32683.1| UvrD/REP helicase [Xylella fastidiosa Ann-1]
          Length = 1242

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 138/983 (14%), Positives = 282/983 (28%), Gaps = 129/983 (13%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             + +  +    L  L   + + +   +  ++E G     KK+      +      ER+SL
Sbjct: 252  PDAALAVAETTLRHLWQTEGAALRSALHTALEEGVLN--KKSYKADALNDLWDWMERWSL 309

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEK-------LKKSQDEFIKIRDRFNTYKMFK 121
              + +   +  P+   +T    +   + +         + ++   ++       T +   
Sbjct: 310  APNAYP--EPHPKLQTLTVAALQAGTNKQGAGRSPNSPVSEAVQHYLDALTSIETARAQH 367

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                   L           K++  V  ++DLI      L      A +R  + Q+    L
Sbjct: 368  RLRRLHRLRAAARLRLTALKRQRRVQTYDDLIQRVAQALDGPHRLALVRS-LRQQYRMAL 426

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT + QW +   +  D         +   LF +GD KQ+IY F G +    L   
Sbjct: 427  VDEFQDTDVAQWRIFHHVFGDTEHAHTADLT-PALFLIGDPKQAIYGFRGGDVHTYLA-- 483

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSS 300
                     A +      L  +FRS   +L  ++ +++   +A  L+   +   ++  + 
Sbjct: 484  --------AAARAERAPPLERNFRSRPLLLRAIEALYTQAGDAAFLTPGIAFHPVQPGTH 535

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI-GT 359
                  +         Q      P   +          +++ ++      + I   +   
Sbjct: 536  CRDTDLSNAGVPAPALQVWQAPPPLDSTAKGKPKPWNADAARALCTDACVHAIHQWLADA 595

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             T  +    R + A DI VLVR  ++  L+            I  V   +  L       
Sbjct: 596  QTGRALLDGRPVGAGDIAVLVRSHREATLMQQAL----ARAGIPAVAAGKRSLLTTDEAN 651

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            + +AL   +L   D+      L + L   + + I               + Q+ A     
Sbjct: 652  EALALLLALLHSADEGRLRTALSTVLVGLTAETIATF----DHDSVASRHWQRQALHWRE 707

Query: 480  KFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            +      +  + +L  +            +L    G ++  +         L E L    
Sbjct: 708  RLHSGGPLGLLTDLCALH--------AARLLSLFDGERRLSNYLQ------LGELLQQV- 752

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAH-------SANHNEVRIMTVHTAKGLESPVVFL 590
                     L  L+  L +     K           ++   V+I+T+H +KGLE P+VFL
Sbjct: 753  ---HLRALGLHGLVDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLVFL 809

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                         +   +  +            Q+              K+  + E  RL
Sbjct: 810  PYVAIGRSHAGPGRYCVVHDAQQGRCLHWCLDKQA----PEWQRAETAWKQEQRAEEARL 865

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYVG+TRA   L I      +      + T    +            I    ++      
Sbjct: 866  LYVGLTRAKHALWIA-----TGTFYQTEHTPLWPLLGDPQAVPAQPGIVFDTAVPPAILP 920

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                   H        +  +          +   +  +   +    +       + +   
Sbjct: 921  RLTPEQPHSVPPARTAQRALLSDWWVYSFTQLAHAKAEPAPDGGRRIAEPLTGGQDEPAW 980

Query: 771  ESLL-------------SDNQTFNRGLIIHKLLQVIFTL-----------PEHKRKNFIT 806
                                     G+ +H++ +    L           P  +R   + 
Sbjct: 981  PQDAIQQPLPGSEVPADPRFTGIRFGVALHEVFERTDFLAWSTWRANVPVPATERGVLLQ 1040

Query: 807  SYCTKNAKLWPAKEYKNLLL-----SITRLL-ENPMMTTAMSCDSYSEVSVSGKINCPKK 860
            +  +        +    LL      ++T +L E   +    + +   E+     I     
Sbjct: 1041 ALRSSGYVAEDVEAGVALLTPLVGHTLTSVLPEGVRLCDVPTTERRPEIEFQFVIQATAV 1100

Query: 861  DIII-------------------------SGRIDQISISQQNIFIFEYKTHHHVPQEI-- 893
            D ++                         +G ID I       ++ +YK++         
Sbjct: 1101 DALLALLHDHGLLQQRQSFGMRRRLEGLMTGMIDLIYRHAGRWYVLDYKSNRLPDYTPVH 1160

Query: 894  ---EHIPYTHIAQLSIYEKILKD 913
                     +  Q  IY   L  
Sbjct: 1161 LSVAMTDSEYDLQALIYTVALHR 1183


>gi|332177512|gb|AEE13202.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707]
          Length = 1123

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 148/930 (15%), Positives = 294/930 (31%), Gaps = 88/930 (9%)

Query: 37   LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            L+  T                     ++    L             +  T+ I       
Sbjct: 252  LTRLTDTTKDEPTIGATNSYITATTWDKYLKNL------DVTEALDDRYTKGIED----- 300

Query: 97   KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
               L       +++     T +        L L   +  +  +  ++  +   +D     
Sbjct: 301  -SPLISIFQTILRLYTDLFTLRTAIRNGYELQLLGEIQENVYKVSEELGITLLDDAKRLI 359

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
              L+     +A+I  ++  ++ H +IDE QDTS  Q+E    L E+             +
Sbjct: 360  RTLVSGEGSTAFIYERLGTKLTHHMIDEFQDTSRFQYENFVPLLEEALSSSG------EI 413

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F VGD KQSIY F  ++P   +  +    K      +    + LP ++RS   I++  ++
Sbjct: 414  FIVGDVKQSIYRFRNSDP---MLLQNDLSKDFP---KDQQTLNLPNNWRSAPAIVSFNNR 467

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV--QLWEQVVSQHDSQCNPQQESWTSYFD 334
             FS+   A  L  +S+  I+           V      ++      Q     E       
Sbjct: 468  FFSLLPYASELKLESSNLIQKVYDPEEVHQEVPDPNQNKIGGVFIHQWEKTPEISQPTAA 527

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT- 393
            +   +++ +    ++   I  ++    +  + ++R  +  DI +L         I     
Sbjct: 528  TEEDDNAETTPPSQLQTKIDYLLRH--VIPSIRERGYKLSDIAILTPNNDTLQRIAQAII 585

Query: 394  ---RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
               + L+ND   +        ++  +   D   L R I+          +++S L N   
Sbjct: 586  LYNKELENDKNKNQHLQPLAFVSREMLSLDANPLYRLIV---------EIMQSVLVNAGA 636

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             +     +  H     +      +             +          S ++   LI+  
Sbjct: 637  SEELYSKSFEHRLAVTHYAELARSLSDSPAL-----DLARCYQEGLSASLYELTLLIVE- 690

Query: 511  KKGRQQFISRFGNEVID-VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
                   +           +D  L+      Q++Y  LQ  +  LE + P +        
Sbjct: 691  ------IVRPLITSADQSYIDALLDTVQDYSQDNYVDLQGFLEWLETHTPRLSL---ETQ 741

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH----------IMPSLNDDPGIP 619
            + ++++T+H+AKGL  PVV L++   ++  H                 ++    + P + 
Sbjct: 742  DALQLLTIHSAKGLGFPVVCLLEYQMRLLEHTDTIWCRDEEIMAELHKLLGGNVEIPTLL 801

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD--QLIICKHSNTSNEKKSN 677
               P  ++R+ +  + I   +     +     YV MTRA     LI+ ++   S    + 
Sbjct: 802  PISPTKEARSTLFREKIVAEEHLALLDRINAFYVAMTRAKSEMHLILSENKGQSGTSINF 861

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
            +R   ++V          K   L+      +    + S                      
Sbjct: 862  ERLISELVTQIQEPGHNQKPDLLSQETIDLQCSELKASPSEDAEIKQRIFYYQTDPTTAP 921

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL-SDNQTFNRGLIIHKLLQVIFTL 796
              P    S     ++ P       +        +S+          GL +H LL  I  L
Sbjct: 922  PKPTTPSSDTSRLVSIPGREQIGALAQLRVRRSQSVSYQAQDAVRNGLFLHALLSEIDYL 981

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS-------YSEV 849
               +    +   C +   L P  +   L   + + L +P +       S        S V
Sbjct: 982  EHDELVKLLDMKCLQ--GLIPQDQRDALAKLLEQALTDPKIAEYYDRSSGWQVINERSIV 1039

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQ-NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
             +S       +   I  R D+I   ++    I +YK+      E +     H  QL  Y 
Sbjct: 1040 RLSQDTESETRQARIE-RPDRILYDEEQQAVIIDYKSG----GEAQQYTERHKRQLRSYR 1094

Query: 909  KILKDSYPNKSLVCLLIYVSEP--KVFIIP 936
            K L +    K +   L+Y+S     +  + 
Sbjct: 1095 KALLE-SGFKRVCAYLLYLSADGHHIVEVD 1123


>gi|307578540|gb|ADN62509.1| exodeoxyribonuclease V beta chain [Xylella fastidiosa subsp.
            fastidiosa GB514]
          Length = 1243

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 139/980 (14%), Positives = 279/980 (28%), Gaps = 122/980 (12%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             + +       L  L   + + +   +  ++E G     KK+      +      ER+SL
Sbjct: 252  PDAALAAAETTLRHLWQTEGAALRSALHTALEEGVLN--KKSYKADALNDLWDWMERWSL 309

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEK-------LKKSQDEFIKIRDRFNTYKMFK 121
              + +   +  P+   +T    +   + +         + ++   ++       T +   
Sbjct: 310  APNAYP--EPHPKLQTLTVAALQAGTNKQGAGRTPNSPVSEAVQHYLDALTSIETARAQH 367

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                   L           K++  V  ++DLI      L      A +R  + Q+    L
Sbjct: 368  RLRRLHRLRAAARLRLTALKRQRRVQTYDDLIQRVAQALDGPHRLALVRS-LRQQYRMAL 426

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT + QW +   +  D         +   LF +GD KQ+IY F G +    L   
Sbjct: 427  VDEFQDTDVAQWRIFHHVFGDTEHAHTADLT-PALFLIGDPKQAIYGFRGGDVHTYLAAA 485

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSS 300
               ++             L  +FRS   +L  ++ +++   +A  L+   +   ++  + 
Sbjct: 486  VRAERAPP----------LERNFRSRPLLLRAIEALYTQAGDAAFLTPGIAFHPVQPGAH 535

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI-GT 359
                  +         Q      P   +          +++ ++      + I   +   
Sbjct: 536  CRDTDLSNAGVPAPALQVWQAPPPLDSTAKGKPKPWNADAARALCTDACVHAIHQWLADA 595

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             T  +    R + A DI VLVR  ++  L+            I  V   +  L       
Sbjct: 596  QTGRALLDGRPVGAGDIAVLVRSHREATLMQQAL----ARAGIPAVAAGKRSLLTTDEAN 651

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            + +AL   +L   D+      L + L   + + I               + Q+ A     
Sbjct: 652  EALALLLALLHSADEGRLRTALSTVLVGLTAETIATF----DHDSVASRHWQRQALHWRE 707

Query: 480  KFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            +      +  + +L  +            +L    G ++  +         L E L    
Sbjct: 708  RLHSGGPLGLLTDLCALH--------AARLLSLFDGERRLSNYLQ------LGELLQQV- 752

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAH-------SANHNEVRIMTVHTAKGLESPVVFL 590
                     L  L+  L +     K           ++   V+I+T+H +KGLE P+VFL
Sbjct: 753  ---HLRALGLHGLVDWLARRIAEAKNDDETQLLRLESDARRVQIVTLHKSKGLEYPLVFL 809

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                         +   +  +            Q+              K+  + E  RL
Sbjct: 810  PYVAIGRSHAGPGRYCVVHDAQQGRCLHWCLDKQA----PEWQRAETAWKQEQRAEEARL 865

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            LYVG+TRA   L I   +    E+ +      D           V    +  +I      
Sbjct: 866  LYVGLTRAKHALWIATGTFYQTERTALWPLLGD-PQAVPAQSGIVFDTAVPPAILPRLTP 924

Query: 711  AYEWSTHHPENTPLERE---------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                S                       +     E                +     P  
Sbjct: 925  EQPHSVPPARTAQRGALLSDWWVYSFTQLAHAKAEPAPDGGRRIAEPLTGGQDEPAWPQD 984

Query: 762  IDTKGKTNLESLLSDN-QTFNRGLIIHKLLQVIFTLPEHKRKN-----FITS---YCTKN 812
               +     E            G+ +H++ +    L     +                  
Sbjct: 985  AIQQPLPGSEVPADPRFTGIRFGVALHEVFERTDFLAWSTWRANVPVPATERGVLLQALR 1044

Query: 813  AKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII 863
               + A++ +  +  +T L+ +           +    + +   E+     I     D +
Sbjct: 1045 GSGYVAEDVEAGIALLTPLVGHTLTSVLPEGVRLCDVPTTERRPEIEFQFVIQATAVDAL 1104

Query: 864  I-------------------------SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP- 897
            +                         +G ID I       ++ +YK++        H+  
Sbjct: 1105 LALLHDHGLLQQRQSFGMRRRLEGLMTGMIDLIYRHAGRWYVLDYKSNRLPDYTPAHLSV 1164

Query: 898  ----YTHIAQLSIYEKILKD 913
                  +  Q  IY   L  
Sbjct: 1165 AMTDSEYDLQALIYTVALHR 1184


>gi|229125267|ref|ZP_04254369.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
 gi|228658193|gb|EEL13931.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
          Length = 714

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 98/555 (17%), Positives = 194/555 (34%), Gaps = 102/555 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE K  N  +DF+D+++ T +LL        +   +  +  HIL+DE QD SL+Q
Sbjct: 236 IYQSYEEWKADNNQMDFDDILLYTYELLLDD---YHLLELLQNKFLHILVDEYQDISLLQ 292

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +++ L              + +F VGD+ Q++YSF G+ PK +L              
Sbjct: 293 QMIVKMLA----------YPQKLIFGVGDDGQTVYSFRGSNPKLILDFPNEFP------- 335

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +I+L +++RS   I+ + ++V    +        +      +              
Sbjct: 336 -GTKVIKLEVNYRSNPYIVGLGNEVIKNNKIQFKKELRAYKVDGPKPI------------ 382

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           ++S  DS  +       A  I  +I +++  +           Q
Sbjct: 383 ----------------YSSPEDSDEE-------AINIVQSIKSVVKGEKR---------Q 410

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVV-GNDRFILTDHLAIKDLMALGRFILSQ 431
            KDI VL R    +  I            I  V  +++    +++ ++ ++   R  L+ 
Sbjct: 411 FKDIAVLYRTHAVSRAIVEQL----VLNDIPYVQYSNKDTFYENMYVRPIIGFLRLALNP 466

Query: 432 EDDLSFVCMLKSPLFNFSEDDIF-----KICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            D+ +   +      +  +          +     + + +  Y+         + Q +I 
Sbjct: 467 NDEEAINEICNVLYISKDKTMSHINRASTLDYIEGKVKPLLYYLTSIPELKKYQLQFIIG 526

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR---NEQNS 543
            I  L  +    +P      I     G ++++       + +  E +   L         
Sbjct: 527 VIKNLKGL-GRLNPALAIEEIRNGYIGYEKYLQNNKRGSLTIHQELVKEVLDELTASSKK 585

Query: 544 YSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +  +   +  +++     K+        N + V + T+H++KGLE P VF +     +  
Sbjct: 586 FKDIDSFLKFIDKVILRNKQMEELQKQQNPDAVALHTIHSSKGLEFPTVFFIGVSEGILP 645

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           HK   ++      N    I                      + + EE  RL YVG+TRA 
Sbjct: 646 HKSALEVMEDRITNKKEIIM-------------------KLQESLEEERRLAYVGITRAE 686

Query: 660 DQLIICKHSNTSNEK 674
            +L I       N+ 
Sbjct: 687 SELYISSPKVVRNQP 701


>gi|262202649|ref|YP_003273857.1| exodeoxyribonuclease V [Gordonia bronchialis DSM 43247]
 gi|262085996|gb|ACY21964.1| Exodeoxyribonuclease V [Gordonia bronchialis DSM 43247]
          Length = 1134

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 135/1036 (13%), Positives = 288/1036 (27%), Gaps = 177/1036 (17%)

Query: 1    LKNRFGLSLNESYEL----IYKDLWPLPYFQVSDINKYVSLSMET-GNPTILKKAQTLQQ 55
            L         E        + + L       ++  + + +  +E  G     +    + +
Sbjct: 94   LHRLLAAGTAEDVARRRAHLVRALSDFDASTIATTHTFCNRMLEALGFLGEREMVYRIVE 153

Query: 56   ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
                   E    L    F T         + +        +++       E  +++D   
Sbjct: 154  EVDELTDEVALDLYLRGFST--SEAPDFSLAEAQRIARDAVRQAAVALAPEAAELQDAGE 211

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
              ++    +      + +    E  K+ + +  ++DL    + ++   DV      +I  
Sbjct: 212  PGRVAARRVRFAARVRQIV---EARKRTSRLRTYDDLQTILHRIITDPDVGEAACRRIRS 268

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                 L+DE QDT  +QW+++R                R L  VGD KQSIY F GAE  
Sbjct: 269  TFAVALVDEFQDTDPLQWDIVRRCFH----------GHRRLVLVGDPKQSIYGFRGAEVL 318

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
              L   R             ++  L  + RS  D++  +  ++                 
Sbjct: 319  SYLSAVR----------SADTLRALDTNRRSDGDLVASLWTLYGGATLGHPGIVVHPVGA 368

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H  SR+     +Q+   + +  +           +         + + +   +A  IS+
Sbjct: 369  AHAGSRLDGAVPMQVRAFMRTDFNR---------LNSLGVPSAPDARARITTDVADHISS 419

Query: 356  MIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
             +    TI  +G +R ++  DI VLVR+ K    +            ++ V      + +
Sbjct: 420  ALSAGMTIVVDGARRPVEPGDIAVLVRQNKTIEPLQTALAA----RGVNAVIGSGVNVFE 475

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              A +  + + R +              +PL  ++ + +  +  +    E    +     
Sbjct: 476  TSAAQHWLWVLRAVEQPSRPDRVRLAALTPLLGWTPERLA-VQAETGTAELGAGFAALGQ 534

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
              G   F  + + +    ++A           +L          ++   E  + +   + 
Sbjct: 535  VFGECGFAAMAQRLMAQENVAARVLAMRGGERLLTDLLQISALCNKQVVESGEGISGLVE 594

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +      +S            Q      R    +   V+IMTVH +KGL+ P+V++    
Sbjct: 595  WLADRIADSSR---------RQRHEDQSRRLERDTEAVQIMTVHASKGLQFPIVYVPFGW 645

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
               +            + +DD G  +            +       +    E  RLLYV 
Sbjct: 646  DGTW-----IDEEGDLTFHDDEGTRLLDVAGPGAPGRGTR-RARYAEEVAGEDLRLLYVA 699

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL-------------- 700
            +TRA  Q++       +       R  +              +                 
Sbjct: 700  LTRAQSQVVTWWAPTANTPTGPLHRLIFGRQRALAERSGTDPQAPWTVAKSVDVPDDVEC 759

Query: 701  ----------TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                       + I              P          +     +++I ++      + 
Sbjct: 760  VTVLRQLAERDSRIEVSPAGRLPTPPAGPAGDDPADLPVLSAAAFDRRIDQQWRRTSYSA 819

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQ-------------------------------- 778
            I       PS ++T  + +   L +                                   
Sbjct: 820  IIAGAAHGPSAVETGSERDGARLDTALDDEPIEAPEPLAGNVIEDESGERTGTPSPMSGL 879

Query: 779  --TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP- 835
                  G ++H++L+ + T     R +                +   L  ++  +L  P 
Sbjct: 880  SFGAGFGTLVHEVLEYVDTSAPDIRSHVAQLVARAAGVRGGTVDVNVLTDALVGVLTTPL 939

Query: 836  ---MMTTAMSCDSYSEVSVSGKI------------------------------------- 855
                + +    D  +E+     +                                     
Sbjct: 940  GFGDLWSIAPRDRLAELDFELPLGDDAASDETETGATVAEIADLMDRHLGADDPLRPYAQ 999

Query: 856  -----NCPKKDIIISGRID-QISISQQNIFIFEYKTHHHVPQEI------------EHIP 897
                    +    ++G ID  + +      + +YKT+   P E+            E I 
Sbjct: 1000 VLRGVPAARLRGFLTGSIDSVLRVPDGRYVVVDYKTNRLRPGELMVEDFHSGAMATEMIH 1059

Query: 898  YTHIAQLSIYEKILKD 913
              +  Q  +Y   L  
Sbjct: 1060 AHYPLQALLYSVALHR 1075


>gi|114563702|ref|YP_751215.1| exodeoxyribonuclease V, beta subunit [Shewanella frigidimarina NCIMB
            400]
 gi|114334995|gb|ABI72377.1| exodeoxyribonuclease V, beta subunit [Shewanella frigidimarina NCIMB
            400]
          Length = 1276

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 143/1076 (13%), Positives = 320/1076 (29%), Gaps = 189/1076 (17%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
            LW   +    ++ + + L          K A    + SQ       +         Q   
Sbjct: 231  LWQSLHDSTLELLQSLPL----NGQRFGKGADGYPKLSQLFDSISNW-----VKFGQGLP 281

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDE-FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            P K +    +++   +    +  + +   +   +R             +   + +   + 
Sbjct: 282  PIKALEQLALSELKLNKGGVIPSADEAPLLDHIERLLELINQLIPSFLVRAREGIRQRFA 341

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K++  ++  +DL+++    L +  +   + + I +     LIDE QDT  +Q+ +   
Sbjct: 342  GQKQQRNLMTPDDLLLSLAMALSQNPI--TLAHAIAKRFPVALIDEFQDTDPLQFTIFNQ 399

Query: 199  LTEDFFV-----------------------------GKNTHSSPRTLFAVGDEKQSIYSF 229
            + +                                 G + +    +L  +GD KQ+IY+F
Sbjct: 400  VYQQPLASQLDLTADARVNSPDDDSKSNDDNGNDNIGNDANKGRLSLLMIGDPKQAIYAF 459

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA+    +  ++  Q              L  ++RS+  ++  V+++FS  ++      
Sbjct: 460  RGADIYTYIAARQQTQAHYN----------LDTNYRSSTQLVNGVNQLFSQHQDPFISQA 509

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                 ++  SS   +           +  +      +       + L + ++   LA   
Sbjct: 510  IPYDIVKTPSSAANKH-------LSEATTNPTALRIRLLAEDDVNGLNKTTARQRLAADA 562

Query: 350  AYTISNMIGTDTIFS-------NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            A  I  ++                + + + AKDI +LVR R +  ++       K    I
Sbjct: 563  ASEIKRLLTEAQQGLCKVNNSIEQEAKPLIAKDIAILVRDRNEAAVMKAELSARK----I 618

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
              V   R  + + +  +++  L   + + +D+ +    L + L  F+   I +      +
Sbjct: 619  GAVFLSRDSVFNTIEAREMAILLYALATPKDERAIRAALATELVGFNAQRIHQFNQDEEQ 678

Query: 463  TETVYEYIQKFANCGISK--------FQHVIKYIHELIHIAQFCSP--------HDFFTL 506
             + V +    +      +        F    K IH  +  +             ++    
Sbjct: 679  RQQVLDQFTHWHQLWQQRGVMPALLNFASETKLIHRYLSQSVTADINNDSTYSSNNDNNS 738

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFT--LRNEQNSYSSLQELISELEQY------P 558
                        +         L +F +    L+ +         LI+  EQ        
Sbjct: 739  DNSFNDADDDNAADLKASGERRLTDFRHLAELLQQKATELDGSSALINWYEQQLIGNNGG 798

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
               +    +  N V+I+T+H +KGLE PV F+        + K        P +      
Sbjct: 799  DEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSLARGNKKR-----PAPMMYHKNEQ 853

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
             IW   +           + LK+ T  E  RLLYV +TR      +   + +   K    
Sbjct: 854  LIWDIDATDEG------WEQLKQETLAEDLRLLYVALTRPVYVCYLYIANQSRQLKAGIS 907

Query: 679  RTWYD----------------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
               ++                 +  +  N            +  D   +     H   + 
Sbjct: 908  SQLHETGIGYLLGITDKKTDFALIQAKVNAIATLPAMSVECLGNDIDDSVLADIHDNNDP 967

Query: 723  PLEREETIKQLMDEQ---------KIPKKLFSPIKNDINEPYILNPSTI-DTKGKTNLES 772
             + ++ T  Q +  +          +P +  +P  +D +    L    + D         
Sbjct: 968  LVAKKVTRVQSLAWRVGSYSGLVKHLPHERVAPGADDEDFTDELIQLQLQDELTSEPELD 1027

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
              +  +  N G  +H +L++      +       +   K      A   + L+    ++L
Sbjct: 1028 RFTFERGANAGSFMHLVLELFDFTQANTELTPALTKAMKQYGFDEALWQQPLMTWYQQIL 1087

Query: 833  ENPM------------MTTAMSCDSYSEVSVSGKINCPKKDII----------------- 863
              P+            ++         E+     I+  +   +                 
Sbjct: 1088 VAPLFIEPSSEDTSLTLSQLGMKQKMVEMEFYLPISTLQASQLNHILQQHGYVAGLDFDT 1147

Query: 864  ----ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKI 910
                + G ID     +   +I +YK++H      ++           + +  Q  +Y   
Sbjct: 1148 LKGMLKGFIDLTFEHKGQFYIADYKSNHLGDNYSDYTHSAMAKAIDAHRYNLQYILYTLA 1207

Query: 911  LKDS---------YPNKSLVCLLIYVSE--------PKVFIIPQNKLNKAFAEIST 949
            L            Y      C  +++             +  P   L +    + T
Sbjct: 1208 LHRYLSLRLPNYNYQQHIGGCYYLFLRGMHPEHPGAGVFYDKPPQALIEQLDRLFT 1263


>gi|227541923|ref|ZP_03971972.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182366|gb|EEI63338.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 1228

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 135/1062 (12%), Positives = 273/1062 (25%), Gaps = 240/1062 (22%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            + + D++    ++      +         F +T  +  +   L   + +  K N +  F 
Sbjct: 182  RTAEDVRGATAEALRVIDNVERATKDTTKFIATQDTRVVLLKLVDTFNQYLKDNRLTTFS 241

Query: 151  DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
              +     L         +          +++DE QDTS  Q   +RSL         T 
Sbjct: 242  HTMAAAARLASGEPS---VGSSERHRYRVVMLDEYQDTSHSQRIFLRSLY-------GTG 291

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG-----QKFSIIELPLSFR 265
                 + AVGD  Q+IY + GA    +                    Q    +E+  SFR
Sbjct: 292  EPGLAVTAVGDPMQAIYGWRGANSSNLANFVTDFPHTVEKNPDGTPVQPAKKLEMTTSFR 351

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            +   +L V + +      A G       ++     R G  G  ++        + + +  
Sbjct: 352  NPGAVLGVANHISGAILEATGEYAPEERSVAELEPRAGA-GDGEVLLANFELEEEEADFV 410

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                 + +  +  +     +A         +  +         +  +A    +LVR+   
Sbjct: 411  ARQLAAEYHGVSDDQLDEYVA--------TLADSAQPTRATNAQPFEA---AILVRQHSQ 459

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
             P            YK+    +    L     I DL+++ + +   ED  + + +L  PL
Sbjct: 460  VPEAVKALE----KYKVPYHVHSLAGLLMMPEIVDLVSIAKALARPEDSSALLRILTGPL 515

Query: 446  FNFSEDDIFKI-------------------------CTQRHETETVYEYIQKFANCGISK 480
                  D+  +                                 T  +           +
Sbjct: 516  VKLGFADVKALTNRARTLNSYQRDKATAETTTEDAVNAADESGATESDADNPALVRLKKE 575

Query: 481  FQHVIK--------------------------------YIHELIHIAQFCSPHDFFTLIL 508
             +  +                                     L   +      D F  I 
Sbjct: 576  IEDALAEDTVFLGDALADLGDASQYTEEGYARLTSLASRFRWLRGHSLASGLQDIFQDIE 635

Query: 509  GAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
                 R + ++R      G      LD F  +         ++L+  +  L+        
Sbjct: 636  NTFGIRTEVLARENPRQLGVPGTSHLDTFHGYVADFASIDGATLRGFLEYLDAEAEDRAM 695

Query: 564  AHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH-------------IKKMH 607
                   + N V IMTVH AKGLE   V ++   S+++                      
Sbjct: 696  DQGEQTVSPNRVDIMTVHAAKGLEFATVAVIGANSKMYKDGQQTITTETAASRPETLPSS 755

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSD--------------------------------L 635
            ++    D P   +  P  + +++  +                                  
Sbjct: 756  VIGDAVDIPEPLLEKPAKEWKDSGFNAYEYGFLDSTPRYAVSPDLEITKGSHFKESLERY 815

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-------------KKSNQRTWY 682
               L+     E  RL YV +TR+S +L I  H+   N+                  +   
Sbjct: 816  KYFLRMKEVRESTRLFYVAVTRSSHRLFITSHARERNDFQTMTFQPSNAAEGGKAPKKQK 875

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                 +    E    I  ++  + +    +E      E       +  +  +D     + 
Sbjct: 876  PHTPTAITPTELFASIAQSDEFSGNVVTWWEPGEELEEIYVERDSDEARFPVDFLGDKRG 935

Query: 743  LFSPIKNDINEPYILNPS-------------------------TIDTKGKTNLESLLSDN 777
                    + E      S                            +      +    + 
Sbjct: 936  AIEHAAALVKEKMRERESQGVGSICERVLSAAEAAKNGDTDADASGSPADEPEKENTPEK 995

Query: 778  QTFNRGLII-HKLLQV---------------------------------------IFTLP 797
            Q  +R  +  HKL++                                        +   P
Sbjct: 996  QRISRWRLTAHKLVEEKCLAERKEIEVELGSRINATEIVQLKKNPEELAKRRLRPVPFKP 1055

Query: 798  --EHKRKNFITSYCTKNA---KLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEV 849
              + KR      +  ++     L    +   +        E   +            + V
Sbjct: 1056 NSQAKRGTKFHQWIEEHYTLPTLLDDDQLPGIGEEDVTAEELAQLKENFLASPWADRTPV 1115

Query: 850  SVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            +V   I        ++G+ID +   +     + ++KT     Q           QL+ Y 
Sbjct: 1116 AVEQAIEYQIGSKRVTGKIDAVFRNTDGTWTVVDWKTGKVPSQRD---LPALSLQLAEYR 1172

Query: 909  KILKDSYPNK--------SLVCLLIYVSEPKVFIIPQNKLNK 942
                +    +         +  +  YV E      P+  ++K
Sbjct: 1173 LAWAEIQSKREGRHVDPSEVEAVFFYVREGYTLK-PETLMDK 1213


>gi|266623215|ref|ZP_06116150.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
 gi|288865014|gb|EFC97312.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479]
          Length = 614

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 103/602 (17%), Positives = 205/602 (34%), Gaps = 120/602 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
             +  D  E +     E   ++        + +   S  + K L + YEE  ++  ++DF
Sbjct: 124 RVEVEDEAEFVSAVLSEISSVKGEMIHLNHYYAKNCSEEVFKKLYSGYEERLRRANLIDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +D+++    L ++      I     ++  +IL+DE QD + +Q+E++R L          
Sbjct: 184 DDMLVMCYQLFQE---RKDILSAWQRKYQYILVDEFQDINRVQYEIVRMLAA-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 LF VGD+ QSIY F GA+P+ +L  ++               + L ++FRST D
Sbjct: 233 --PENNLFIVGDDDQSIYRFRGAKPEIMLGFEKDYPN--------AERVLLNINFRSTKD 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+    ++ +  +                               ++++           W
Sbjct: 283 IVDTAGRLIAHNKTRFPKE-------------------------IITKQGRGKPVVTRVW 317

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               +   +          I + I++                   DI VL R        
Sbjct: 318 KDPQEETLE----------IVHEIADYAAAG----------YAWSDIAVLYRTNLGPR-- 355

Query: 390 TFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
             L      +Y I     D    L DH   K+L+A              + ++  P    
Sbjct: 356 --LLIEKLMEYNIPFCMKDAVPNLYDHWIAKNLIAYLNAAAGDLSRSCILSVINRPNRYI 413

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           S D +          ++ Y+         + + + +   +  L  +A   + +     + 
Sbjct: 414 SRDALELPVVNWEAVKSFYQDKG----WMVERIEQLEYDLKFLRQLAPAAAVNYIRKAVG 469

Query: 509 GAKKGRQ--QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                R+  ++      E+ +VLD+              +++   + +E+Y   +K    
Sbjct: 470 YDDYIREYAEYRRMKPEELFEVLDQLAESAAGF-----KTVEAWFAHMEEYARELKLQAR 524

Query: 567 ANH---NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
           +       V +MT+H++KGLE  +V+++D    V  H                       
Sbjct: 525 SREKRTEGVSLMTMHSSKGLEYRIVYILDANEGVTPHH---------------------- 562

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                        K +  +  EE  R+ YV MTRA ++L +   S   ++K+   R   +
Sbjct: 563 -------------KAVLDADMEEERRMFYVAMTRAKERLHVNYVSERYSKKQEVSRFVKE 609

Query: 684 MV 685
            +
Sbjct: 610 YL 611


>gi|50954629|ref|YP_061917.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951111|gb|AAT88812.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 1125

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 116/1004 (11%), Positives = 268/1004 (26%), Gaps = 166/1004 (16%)

Query: 35   VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP 94
             ++  E     + ++        +   ++     +++  L       +NI       +  
Sbjct: 161  AAVLSEASAWQLARRVVVDSADDRLADLDRNVDAVTTAVLNLSRALSENIAGAAEVGRMA 220

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            +   ++        +    + T K    T+ +L     L   + E K++   +++ D + 
Sbjct: 221  EGFGRVIDLPTGSARKAGPYATVKAAVETVGALPSLLGLAERFAEEKRRRGFVEYSDQVA 280

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
                + ++      +     +    +L+DE QDTS++Q  ++ +L               
Sbjct: 281  LALAVCER---LPDVVDDYRRRYRVVLLDEYQDTSVVQTRLLSTLFS-----------GE 326

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             + AVGD  QSIY + GA    + R         T   ++     L  S+R+   +L   
Sbjct: 327  AVMAVGDPHQSIYGWRGASAANLSRFATDF----TGRPRRADEYVLSTSWRNPTRVLDAA 382

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            + + +                            V+           +         +   
Sbjct: 383  NILVA-------------------PLGAVSPVRVERLRARPGAVAGE--------LACTF 415

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                E  A  +A   A  I+      T+ S             +L R  K       +  
Sbjct: 416  GQTVEEEAEAIAAWFAERIARRDAEGTLPSA-----------AMLCRSIKKI----EVFT 460

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
               + +++         L +   I DL++  R +         + +L    +     DI 
Sbjct: 461  AALSRHRVPFHVLGLGGLLEQPVIADLVSALRVMHDPTAGSELIRLLTGARWRVGPKDIA 520

Query: 455  KICTQRHETETVYEYIQKFANCGISKFQH------------------------------- 483
             +              Q+       + +                                
Sbjct: 521  ALRRVASWLAGCDHRFQELEPDVRDRLRRSVAGEESASLVDALDFVVEAPEGHRQLSAFS 580

Query: 484  ---------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFL 533
                       + + +L   A      D  T++    +   +  +    +     LD F 
Sbjct: 581  GSGVERMRAAGRQLDQLRSRAG-LDLLDLVTIVQQELRLDIEVAANETAQLGQASLDAFA 639

Query: 534  NFTLRN-EQNSYSSLQELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVF 589
                     +  ++L   +S L +         R+       V+I+T+H +KGLE  VV 
Sbjct: 640  EQVASYLASDDRATLGSFLSWLAEAEKRDNLAPRSEDPEPGTVQILTIHGSKGLEWDVVA 699

Query: 590  LVDTGSQVFS-----------HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +                       +       S          +   K+ +  ++D    
Sbjct: 700  VPRLVEGELPVPPQSRRGWLAFGQLPNEFRGDSAELPVLPWRTVEDQKALDGAIADFEAE 759

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS---------- 688
                 ++E  RL+YV +TRA + L++     ++  +      +   +  +          
Sbjct: 760  NLARHRDEQRRLVYVAVTRARESLLLTGSYWSTQSRPRGPGAYLRELQGAGLIAGDAFPP 819

Query: 689  ---FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                 ++      +  +                 E     R           +    L +
Sbjct: 820  CDDPEDNPLAPASRTVSWPLDPLGARRRSVETAAEAVRSARARGAGDGGVYARDLDLLLA 879

Query: 746  PIKNDINE------PYILNPST--------IDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
                  +E      P  +  S                         +    G + H+ ++
Sbjct: 880  ERARRPSESGLVELPARIPASRFKDYVSDPAGVASALRRPMPERPYRQTRLGTLFHRWVE 939

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSE 848
                    +           +A    A E  +    I        +    +     + + 
Sbjct: 940  -------ERYGTVAGRADELDA---TAHELDDPAGEILEAERLADLQATFAASEWAARAP 989

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIF---IFEYKTHHHVPQEIEHIPYTHIAQLS 905
              V  +I+      ++  ++D +           I ++KT        +        QL+
Sbjct: 990  DEVELEIHIALAGQVVVCKLDAVYRIADGRHDYQIVDWKTGRAPHDVGD--LDRKQLQLA 1047

Query: 906  IYEKILKD---SYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
            +Y           P + +  +  +V++  V    +    +  AE
Sbjct: 1048 LYRLAFAQYAGIEPER-IDAVFYFVADDAVVRPSRLYSERELAE 1090


>gi|148652066|ref|YP_001279159.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
 gi|148571150|gb|ABQ93209.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
          Length = 742

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 189/617 (30%), Gaps = 126/617 (20%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
             T   E+   ++      ++   +KN+  ++   +   L+  +  S++  I +RD    
Sbjct: 199 LDTGDSEDALDMIC----KEQGIVRKNM--KQAFPRKKTLQNLISTSRNRHILLRDLIEN 252

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
              +      + L + L   Y + K+ N + DF+D+I      LK        R  I   
Sbjct: 253 --DYPDIAIHIPLIEDLAMAYHKYKRANHLYDFDDIISQVVYHLKNN---LQFRKLIQDT 307

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             H+++DE QDT++ Q ++I  L E             +L  VGD+ QSIY+F GA  + 
Sbjct: 308 YRHVMVDEYQDTNIPQKQLIDYLCE---------PDNVSLMVVGDDNQSIYAFRGANYEN 358

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L                  +I+L  ++RST  IL  V+ +             S   I 
Sbjct: 359 ILLFADGYP--------DAKLIKLEQNYRSTPAILDYVNALSEHITLGYQKKLFSNLAI- 409

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                                       +        D           A  IA  I  +
Sbjct: 410 -------------------------EGEKPTLCRRSND--------KQEAVYIADKIIEL 436

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                      K      D  VL R    +  I            I  +        +  
Sbjct: 437 -----------KPEYDFNDFAVLSRTSFQSNEIQLQF----MQRNIPFIVVGGIKFIEKR 481

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFAN 475
            IKD++AL + + +  D +++  +L +      +    KI        +++   +     
Sbjct: 482 HIKDILALVKILYNPNDTIAWHRIL-TLFSGVGDVTASKITQAITSSNDSLQPLLDPKLT 540

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
              +    +   + +    A   +  D    ++       + +     E  +     +N 
Sbjct: 541 KNKAPINELYHVLIKAQQQA---TVADILQTLIDFYAPILKTLEDNWRERSEDFRVLINL 597

Query: 536 TLRNEQNSYSSLQELISELEQYPPTI-----KRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              +     SSL   +  L   PP               + V I T+H+AKGLE PVVF+
Sbjct: 598 AQEH-----SSLDNFLENLALDPPNDSVAVMTNPEDKQTDAVTISTIHSAKGLEWPVVFV 652

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 +  H                                            EE  +L
Sbjct: 653 NALVDGLMPHHRSLHEF----------------------------------EALEEERKL 678

Query: 651 LYVGMTRASDQLIICKH 667
            YV  +RA   L +   
Sbjct: 679 FYVACSRAKTHLYLTAP 695


>gi|291524912|emb|CBK90499.1| Superfamily I DNA and RNA helicases [Eubacterium rectale DSM 17629]
 gi|291529053|emb|CBK94639.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 617

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 97/563 (17%), Positives = 175/563 (31%), Gaps = 122/563 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   YE   K+N ++DF+D++  T +L K+      I      +  +ILIDE QD
Sbjct: 158 EIFRDIYKKYETRLKENRLIDFDDMLSYTYELFKE---RPDILALWQNKYKYILIDEFQD 214

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q+E+I+ L                LF VGD+ QSIY F G++P+ +L  ++     
Sbjct: 215 INRLQYEIIKMLAA----------PQNNLFIVGDDDQSIYRFRGSKPEIMLGFEKDYP-- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++R    I+     + S           + +  +   +       
Sbjct: 263 ------DAKRILLDTNYRCGRYIVEASLNLISHNRERFDKKIIAASKSKAPVTFA----- 311

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                     D   +      L R I   I              
Sbjct: 312 --------------------------DFENRRDENIFLIRDIDKKIKA------------ 333

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
                  D  VL R                  Y I     D    + +H   +DL    R
Sbjct: 334 --GAVFSDFAVLFRTNTQPR----QLIEQLMSYNIPFKTKDNIPNIYEHWIARDLFTYQR 387

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                 D   F+ ++  P    S D +        E   +++                I+
Sbjct: 388 IAGGSRDRADFLQIMNRPKRYLSRDSLCDATVAFDEWIKLFD--------EKPWIAERIE 439

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKG------RQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +   + +    +P+     I              ++ +    ++ D+LDE  +      
Sbjct: 440 KLEYDMKLISRMNPYASINYIRRGIGYDDFLAEYAEYRNINKEDLFDILDEIQSGAKGFA 499

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              Y    E I E  +    +  +  ++ N V + T+H++KGLE   V+++D    +   
Sbjct: 500 T--YEEWYEHIREYTKQMKLMALSKESDPNAVTLATLHSSKGLEFENVYIIDANEGIMP- 556

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                               K + +   EE  RL YVGMTRA  
Sbjct: 557 ----------------------------------YKKAVLEKDIEEERRLFYVGMTRAKT 582

Query: 661 QLIICKHSNTSNEKKSNQRTWYD 683
            L +    + +++     R   +
Sbjct: 583 SLSVYSVKSVNDKSAQASRFVRE 605


>gi|315634341|ref|ZP_07889628.1| exodeoxyribonuclease V beta subunit [Aggregatibacter segnis ATCC
            33393]
 gi|315476931|gb|EFU67676.1| exodeoxyribonuclease V beta subunit [Aggregatibacter segnis ATCC
            33393]
          Length = 1220

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 139/956 (14%), Positives = 279/956 (29%), Gaps = 158/956 (16%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNII----TQEINKKSPDLKEKLKKSQDEFIK 109
            +++  +    +  + +  +   +K            T    +K  + +E L       I 
Sbjct: 276  RRSFTSANRPKWLAAMKRWAGIEKADFPDCFYRFGQTAMDEQKGEEAQEALSHPLFIKID 335

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                F+  +   S        + LN    E K  +    F DL+    + L     +   
Sbjct: 336  ELLAFSEQQALLSQALWFHYLETLNGQLAEYKLNHSEKSFYDLLRLLKEALC-HLNNTEF 394

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
               I  +    +IDE QDT  +Q+++   +  +    + T  +      +GD KQ+IY F
Sbjct: 395  AQLIRYQYPFAMIDEFQDTDAVQYQIFSKVYVEPLRLEPTSDNG--FIMIGDPKQAIYKF 452

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA+                 A +      L  ++RS  D++  V+ +F   E    L  
Sbjct: 453  RGADIF----------TYFKAADEAQHRFNLGKNYRSHQDVVQCVNHLFDFHEPPPFLYN 502

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                              +Q           +     E   +    + + S    +A+  
Sbjct: 503  K-----------------IQFLPVESKDDHPKFWLNGEVEPAVRFYVDEASVKENMAKAC 545

Query: 350  AYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            A +I + + +             G ++ ++ + I VLVR RK+  L+    R L      
Sbjct: 546  AVSIQHWLQSAVENNADFRSDEKGIEKTLKPESIAVLVRSRKEADLVKNALRRLGIA--- 602

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            SV  ++   + D  A KDL+ +    L+   + + +  + + +F  +  DI +I      
Sbjct: 603  SVFLSENSNVFDSNAGKDLLLILTACLNPFSERNILNAVATAIFAQTAADIQRI----RL 658

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             E  +EY  +        +Q        ++ +       +  T  L      ++ ++   
Sbjct: 659  DENRWEYWVEKFIHYQKTWQK-----QGVLVMLHQLFLQEKITEKLYPTVDGKRLVTDLL 713

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTA 580
                  L E L       ++  + L+    +++        +    +    V+I+T+H +
Sbjct: 714  -----HLAELLQEAATLNESEAALLRWFEKQIQGEDRQTEQQVRLESELQLVKIVTIHKS 768

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE  +V+L   G   ++ K   +        D   +   I  S  ++         +K
Sbjct: 769  KGLEYDLVWLPFIG---YASKFRPEHISTYYDQDRDEVLWDIDGSHEKD---------VK 816

Query: 641  KSTQEEYNRLLYVGMTRASDQ----------------LIICKHSNTSNEKKSNQRTWYDM 684
            +    E  RLLYV +TRA  Q                L +    +              +
Sbjct: 817  QEDFAEQLRLLYVALTRAKYQLNIGVPKTFEKKWSALLYVLTQGDIQTNDNPTAYDSLPL 876

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP--------------LEREETI 730
            +        R        +  K      +  T  P N                    E I
Sbjct: 877  LEKLVQRAPRGSIQISETTALKALDELMQSETQAPLNAATFTGHIEQNWTVTSFSAIEAI 936

Query: 731  KQLMDEQKIPKKLFSPIKNDI------------NEPYILNPSTIDTKGKTNLESLLSDNQ 778
             Q     K      S +  +                  +  S           S      
Sbjct: 937  HQNKKYYKEQLAAESAVAFEPVFDGGKDYDFNEQATETMAESVSHESAYPFGYSPFDFPH 996

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--- 835
                G  +H+ L+      +   ++ +   C             +L   +  +L+ P   
Sbjct: 997  GIKIGTALHRFLEKY-DFSQPLNEDKVQKLC--QWLQLEETWLPSLQQWMKAILDTPLSA 1053

Query: 836  -----MMTTAMSCDSYSEVSVSGKINCPKK------------------------DIIISG 866
                  +          E+    K+N                              ++ G
Sbjct: 1054 DDTTLKLNNLSRQQCVKEMQFYLKLNRVFDVTAFNRALQKHHHLPSEALQFDAIKGMLRG 1113

Query: 867  RIDQISISQQNIFIFEYKTHHH---------VPQEIEHIPYTHIAQLSIYEKILKD 913
             +D +       ++ +YK++              E   +   +  Q   Y   L  
Sbjct: 1114 FMDLVFCHNGKYYLVDYKSNFLGVEPQNYVGKSLEQAMLANHYDWQYLFYTLALHR 1169


>gi|254180283|ref|ZP_04886882.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 1655]
 gi|184210823|gb|EDU07866.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 1655]
          Length = 1270

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 130/1012 (12%), Positives = 284/1012 (28%), Gaps = 156/1012 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452  RYTLAVNQRSTPAIVGACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317  QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                        WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504  TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
              I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564  SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--------- 484
                   L S  F      ++++     E + +    +  +  G                
Sbjct: 620  LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASGNGGGARAASAGAPAPSPA 679

Query: 485  -------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFL 533
                   ++       + +       +  + G  +  ++ ++    E      + L E  
Sbjct: 680  DADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELT 739

Query: 534  NFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  +     +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF   
Sbjct: 740  QARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPF 799

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                         +      +D+ G  +        +       +   +    E  RL+Y
Sbjct: 800  LNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVY 857

Query: 653  VGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            V +TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++   + W 
Sbjct: 858  VALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQ 917

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----- 765
            A           P+           + +  +      +   +   I + S++ +      
Sbjct: 918  ALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDE 977

Query: 766  --------------------------------------------GKTNLESLLSDNQTFN 781
                                                         +     +L+  +   
Sbjct: 978  NGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAENDILAFPRGAA 1037

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
             G  +H+LL++                  +          + L   +TRL+ +       
Sbjct: 1038 AGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELV 1097

Query: 836  ---MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQ 870
                +         +E+           + +                      + G ID 
Sbjct: 1098 PGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDM 1157

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1158 IVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1209


>gi|251792613|ref|YP_003007339.1| exodeoxyribonuclease V subunit beta [Aggregatibacter aphrophilus
            NJ8700]
 gi|247534006|gb|ACS97252.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter aphrophilus
            NJ8700]
          Length = 1220

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 137/963 (14%), Positives = 281/963 (29%), Gaps = 166/963 (17%)

Query: 43   NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
            + T  K    ++Q S+ +   +       F              Q +        ++L +
Sbjct: 281  SATRPKWLTAMKQWSEKET-ADFPDCFYRFGQQAMNEQAGEACKQPLTHAVFGQIDELLQ 339

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
               +   +      + +       +           E K  +    F DL+    + L  
Sbjct: 340  VLQQGECLAQALWFHYLNALNTQLV-----------EYKLNHREKSFNDLLRLLKEALYH 388

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               + + R  I  +    +IDE QDT  +Q+++   +  +     +          +GD 
Sbjct: 389  PQNTEFARL-IRYQFPFAMIDEFQDTDAVQYQIFSKIYVEQSQLDSQSDKG--FIMIGDP 445

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQ+IY F GA+                 A Q      L  ++RS  +++  V+ +F   E
Sbjct: 446  KQAIYKFRGADIF----------TYFQAARQAEHCFNLDKNYRSEQNVVACVNHLFDFTE 495

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
            N   L +D                 +Q       +  SQ     ++  +    L + S  
Sbjct: 496  NPPFLYQD-----------------IQFLPVKAREDHSQFWLNGKAEPAVRFYLDESSVK 538

Query: 343  SILARRIAYTISNMIGTD-------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              +A+  A +I + + +        +      ++V++ + I VLVR RK+  LI    R 
Sbjct: 539  ENMAKNCAISIQHWLQSAVENQAVFSTDGQTVEKVLKPESIAVLVRSRKEAELIKNELRQ 598

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            L      SV  ++   + D    KDL+ +    L+   +   +  + + +F  +  DI  
Sbjct: 599  LGIA---SVYLSEDSNVFDSHVAKDLLLILTACLNPFSERHILNAVATEIFAQTSADIQH 655

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            I       ET++E+  +         Q   +    L+ + +                G++
Sbjct: 656  I----RLNETLWEHWVEKFIQY----QKTWQKQGGLVMLHRLFLQEKITEKWYPMADGKR 707

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVR 573
                         L E L   +   ++  + L+    +++        +    +    V+
Sbjct: 708  IVTDLL------HLAELLQEAVTLNESEAALLRWFEKQIQGEDRQKEQQVRLESELQLVK 761

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE  +V+L   G   ++              +   +     +S        
Sbjct: 762  IVTIHKSKGLEYDLVWLPFIG---YASSFKPNQLSTYFDEEQQQVLWDFDKSH------- 811

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS------NQRTWYDMVYD 687
              I  ++K    E  RLLYV +TRA  QL+I        +  S            +   +
Sbjct: 812  --IDLVQKEDFAEQLRLLYVALTRAKYQLVIGVPQTFEKKWSSLLYVLTQGDIQTESKPN 869

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF--- 744
            ++ +   + K+      N       +  T  P     E + T++       I +      
Sbjct: 870  AYESQPLLNKLVAKAPANSIVIADTKTLTPLPLRQQAEIQTTLQAAKFSGHIEQNWTVTS 929

Query: 745  ---------------------------------SPIKNDINEPYILNPSTIDTKGKTNLE 771
                                                  +      L  +           
Sbjct: 930  FSAIENIHQNKKYYKAQQTAESAVIFERVFDGGKDYDFNEQPTETLQETASCESAYPFGY 989

Query: 772  SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
            S          G  +H+ L+      +   +  +   C             +L   +  +
Sbjct: 990  SPFDFPHGIKIGTALHRFLEKY-DFSQPLNEEKVQKLC--QWLQLEETWLPSLQQWMNTI 1046

Query: 832  LENP--------MMTTAMSCDSYSEVSVSGKINCPKK----------------------- 860
            L  P         +          E+    K+N                           
Sbjct: 1047 LHTPLSAEEPTLKLANLSRRHCVKEMQFYLKLNQLFDVTAFNRALQQYHHLPSESLQFDA 1106

Query: 861  -DIIISGRIDQISISQQNIFIFEYKTHHH---------VPQEIEHIPYTHIAQLSIYEKI 910
               ++ G +D +       ++ +YK++              E   +   +  Q   Y   
Sbjct: 1107 IRGMLRGFMDLVFYHNGQYYLLDYKSNFLGVEPQNYVGKSLEQAMLANHYDWQYLFYTLA 1166

Query: 911  LKD 913
            L  
Sbjct: 1167 LHR 1169


>gi|154503894|ref|ZP_02040954.1| hypothetical protein RUMGNA_01720 [Ruminococcus gnavus ATCC 29149]
 gi|153795493|gb|EDN77913.1| hypothetical protein RUMGNA_01720 [Ruminococcus gnavus ATCC 29149]
          Length = 610

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 108/562 (19%), Positives = 185/562 (32%), Gaps = 120/562 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   YE  + +   +DF+D+++   DL         I  K  ++  +ILIDE QD + 
Sbjct: 161 REIYREYERKRNEERKIDFDDMLLLCRDLF---IKRPDILKKWQEKFRYILIDEFQDINQ 217

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++VIR L                LF VGD+ QSIY F GA+ + + + ++        
Sbjct: 218 VQYDVIRMLAA----------PENNLFVVGDDDQSIYGFRGADSRLMFQFQKDFP----- 262

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L +++RS+ +I+    KV +  E        +                V+ 
Sbjct: 263 ---DAKQLLLDVNYRSSKNIVKNSLKVIANNEVRFDKKIRAWKESGETLHVQEVKDPVE- 318

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                              A  +   I   + T           
Sbjct: 319 ----------------------------------EASYVVEQIKKQMETG---------- 334

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFIL 429
           I A++I VL R   D   +       K    I     +    L +H   KD+MA  R  +
Sbjct: 335 ILAEEIAVLFRVHTDARAVVEALIDEK----IPFQMREHLPNLYNHFIAKDIMAYFRLAM 390

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
            Q +   F+ ++  P      D +        E         +   C     Q  I    
Sbjct: 391 GQRERKDFLQVMNRPKRYLGRDCLPGRVVSFEE--------MRKFYCDKEWMQDRIDQFE 442

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQNSYSSL 547
             + +    +P+     +       +         N     L E L+      +  + ++
Sbjct: 443 WDLKMLAKMAPYAAIQYLKKKIGYDEFLREYATTKNMKAADLREVLSEIEEAAK-PFQTM 501

Query: 548 QELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +E    +E+Y   +K   +    N   VR+MT+H +KGLE   VFL++       ++   
Sbjct: 502 EEWFVHVEEYTEALKKKEQQKEQNQEGVRLMTLHASKGLEFHTVFLIEANEGRIPYQ--- 558

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                           K  K+   EE  RL YVGMTRA D L I
Sbjct: 559 --------------------------------KAEKEQNVEEERRLFYVGMTRAKDVLKI 586

Query: 665 CKHSNTSNEKKSNQRTWYDMVY 686
                 + ++ S  R   ++  
Sbjct: 587 TYVKIKNGKEISPSRFVEELFE 608


>gi|21245048|ref|NP_644630.1| exodeoxyribonuclease V subunit beta [Xanthomonas axonopodis pv. citri
            str. 306]
 gi|21110779|gb|AAM39166.1| exodeoxyribonuclease V beta chain [Xanthomonas axonopodis pv. citri
            str. 306]
          Length = 1243

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 128/976 (13%), Positives = 260/976 (26%), Gaps = 108/976 (11%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA------SQTQC 61
            + + +          +   +      Y +++    N     +                  
Sbjct: 238  APDPTPIRQAAAQALVATLRAHGDTAYDAIASAFDNKVFDGRRARRASFDKAFEELWNGT 297

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
             +  + L     L +    +     ++               Q    +   +   ++  +
Sbjct: 298  ADAHWILDEKAHLDKLLPARMREFCRDGAHDRVPCSPLFDALQVW-RQADIQVQQWQQNR 356

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                   L     A     K++  V  ++DL+      L+    +  +  ++  +    L
Sbjct: 357  RIALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQG-AQADALLKRLRTQYAIAL 415

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT   QW +  ++  +  + +        LF +GD KQ+IY F G + +  L   
Sbjct: 416  VDEFQDTDDRQWSIFSNVFGEGPLAQAA-GLEPALFLIGDPKQAIYGFRGGDVRTYL--- 471

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                     A        L  +FRS   +L  +D +++    A     D       R+  
Sbjct: 472  -------AAAVTAERAPPLSHNFRSRPGVLAAIDALYAQAGYADAFLTDGIAFHPVRAGT 524

Query: 302  IGQVGTVQLWEQVVSQHD-SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                  +Q            +                   +  +        I   +   
Sbjct: 525  KRVDEDLQRDGVTAPALTLWRAPEPPPPAKGKPKPWSAGRARELATAACVAAIRGWLAGG 584

Query: 361  TIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
               +     R +QA DI VLVR   +   I      +     I  V   +  L       
Sbjct: 585  RDGTATVCGRPVQAGDIAVLVRSHGEATRIQQALGAV----GIPAVAAGKQSLFATEEAL 640

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            +L+AL + +L   DD      L + L       I  +          +   Q+ A     
Sbjct: 641  ELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAAL----ERDGERHRRWQQQALDWRE 696

Query: 480  KFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            ++Q    +  I +L               +L    G ++  +         L E L    
Sbjct: 697  RWQRGGPLALIGDLGATHG--------QRLLALVDGERRLTNYLQ------LAELLQEAD 742

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAH---SANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                  +  +  L   +               ++   V+I+T+H +KGLE P+VFL   G
Sbjct: 743  ARALGPHGLVDWLSRRIANADDNDDAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYVG 802

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                         ++       G           +     + +  KK    E  RLLYVG
Sbjct: 803  IGRKPPDQKPGKRVI---VYRDGKRCLHWPDDVDSMEWKAIKEEWKKEQDAEDARLLYVG 859

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            +TRA   L I       +E+ +       +        E    +  T        +    
Sbjct: 860  LTRAEHALWIASGPFHQHERTALSAMLRALDALQGTAGEGGVVVDTTTPPAHLPRLPAPS 919

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS----------TIDT 764
                P     +R    +  +          +    D      +  S           +  
Sbjct: 920  EAQVPLARNPQRHIAPEWWVYSFTQLANADAGAATDPMASATVVGSGGSDEPSGSEAVAV 979

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK--------NFITSYCTKNAKLW 816
               T+ E           G+++H + +          +                     +
Sbjct: 980  AVATDAEPFDPRFAGNRFGVVMHDVFERCDFAAWQAWRPGQTAPDGQAAPILEALQRGGY 1039

Query: 817  PAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVS--------------- 852
               +  + L  +T L+ +           +         +E+                  
Sbjct: 1040 AQDDLDDGLRMLTALIGHTLTVALPEGTRLADVPEPQRRNEMEFHFAMRPTRVDALLALL 1099

Query: 853  GKINCPKKDI----------IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT--- 899
             +                  +++G ID         ++ +YK++     + + +      
Sbjct: 1100 HRFGVVGDRQAFGARQRLEGLMTGLIDLTYSVDGRWYVLDYKSNRLPSYDADALARAMAH 1159

Query: 900  --HIAQLSIYEKILKD 913
              +  Q  IY   L  
Sbjct: 1160 SEYELQALIYTVALHR 1175


>gi|299771761|ref|YP_003733787.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
            sp. DR1]
 gi|298701849|gb|ADI92414.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Acinetobacter
            sp. DR1]
          Length = 1232

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 128/920 (13%), Positives = 266/920 (28%), Gaps = 138/920 (15%)

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
            L  +   +K               +++++         ++F+   +F        L   +
Sbjct: 311  LADQKVFKKCPAEISDGFYQHPCIQQIQQLFGVLKNYAEQFDQLHIFLKAY----LCVEV 366

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                 +  +      F   I   ++ LK  +        +      IL+DE QDT+  Q 
Sbjct: 367  KKRLPQVLQNKGETTFSQQIRTLSEALKG-EQGQRFAVFVQARYPLILVDEFQDTNQDQD 425

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +++ ++                +  VGD KQ+IY F G +    L   +  Q +      
Sbjct: 426  DMLANIWR-----HPERYQKGCMIMVGDRKQAIYGFRGGDMLTFLNAYKDIQAKH----- 475

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                 +L  + RS AD++ VVD +F    +           +++   R G          
Sbjct: 476  -GREYKLIHNHRSVADLVEVVDALFQRQIDFGE-------EVQYDPIRAGT------RPH 521

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-----FSNGKK 368
             V    +  NP    W    D   +       A+++A+ I +++            + + 
Sbjct: 522  PVLIEQNNHNPHPLRWLMLKDKETE-------AQQVAWKIRDLLNQSHAGQLYFQKDAQT 574

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            + +   DI VL R            +F      I V    +  + D    +D+ AL   I
Sbjct: 575  QALNEDDIAVLSRNHDGL----DKVQFELERLGIRVNRPSKRSVFDCTVAQDVGALLTAI 630

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L   D+      L S LF      + ++                            +   
Sbjct: 631  LHPYDEAKVKRALISRLFAMDLKQLLQLEQ------------------TAEGLSQFMTGF 672

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYS 545
              +  +         +   L      Q  ++    +       L        ++ +    
Sbjct: 673  DSIRELWSAQGFLVAWQQCLIQFDIWQNLVAAQSKDNERVVVNLRHLTEILSQHSEKYSG 732

Query: 546  SLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +       L+Q    + R        ++   V++MT+H +KGLE  +VFL+        +
Sbjct: 733  AQNLYHWYLKQLSSPLDRDWELERKLSSEAGVQLMTIHQSKGLEFKIVFLLGADKPFREN 792

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV--SDLIKHLKKSTQEEYNRLLYVGMTRA 658
                       +  D    +        +        +K  ++    E NRL YV +TRA
Sbjct: 793  NKTLNFSTQDVVQPDSSQTLTQRVVAIADKTYLNEVELKQHEERALAEQNRLWYVALTRA 852

Query: 659  SDQLIICKHSNTSNE-------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            S ++                  K   +   +    D    ++  + I L    +  E  A
Sbjct: 853  SHRVYALLQDLDGKSVSGLAFWKNRTEPFQHRCCTDEMVLEQIPQAIHLAKQTSIIEIQA 912

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNL 770
              +      +        + Q +  +     L S   + +     L+  +T +      +
Sbjct: 913  QRFPEQRFYSRGKTSFSYLAQHLKHKAGTDLLVSQSDDAVLAEDELDLINTAEAISAQPI 972

Query: 771  ESLLS-DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS------------YCTKNAKLWP 817
            + + S   +    G  +H++ + I         + I                 K  + +P
Sbjct: 973  DWIKSNFPRGTLAGNFLHEIFEHINFQCSDDWVSEIRRRFKNDYSSLWQDLLNKYNESFP 1032

Query: 818  AKEYKN------LLLSITRLLENP-----MMTTAMSCDSYSEVSVSGKINCPK------- 859
             +E         +   +  +L  P      +         SE      ++          
Sbjct: 1033 EQEDAENLLYQSVAEWLKDILRTPLDQSFRLNQLQQEQYLSEFPFYLALSDRVLAMTRIQ 1092

Query: 860  -----------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---- 898
                                 ++G ID +    Q   I +YK+++      ++       
Sbjct: 1093 QLFAEYGLNMPELLEARSARYLNGSIDLVYFDGQRYHIADYKSNYLGDDLADYRSDSIAQ 1152

Query: 899  -----THIAQLSIYEKILKD 913
                 ++  Q  +Y   L  
Sbjct: 1153 SMSLASYWLQAGLYLVALHR 1172


>gi|238924183|ref|YP_002937699.1| ATP-dependent DNA helicase [Eubacterium rectale ATCC 33656]
 gi|238875858|gb|ACR75565.1| ATP-dependent DNA helicase [Eubacterium rectale ATCC 33656]
          Length = 617

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 97/563 (17%), Positives = 175/563 (31%), Gaps = 122/563 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   YE   K+N ++DF+D++  T +L K+      I      +  +ILIDE QD
Sbjct: 158 EIFRDIYKKYETRLKENRLIDFDDMLSYTYELFKE---RPDILALWQNKYKYILIDEFQD 214

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q+E+I+ L                LF VGD+ QSIY F G++P+ +L  ++     
Sbjct: 215 INRLQYEIIKMLAA----------PQNNLFIVGDDDQSIYRFRGSKPEIMLGFEKDYP-- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++R    I+     + S           + +  +   +       
Sbjct: 263 ------DAKRILLDTNYRCGRYIVEASLNLISHNRERFDKKIIAASKSKAPVTFA----- 311

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                     D   +      L R I   I              
Sbjct: 312 --------------------------DFENRRDENIFLIRDIDKKIKA------------ 333

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
                  D  VL R                  Y I     D    + +H   +DL    R
Sbjct: 334 --GAVFSDFAVLFRTNTQPR----QLIEQLMSYNIPFKTKDNIPNIYEHWIARDLFTYQR 387

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                 D   F+ ++  P    S D +        E   +++                I+
Sbjct: 388 IAGGSRDRADFLQIMNRPKRYLSRDSLCDATVAFDEWIKLFD--------EKPWIAERIE 439

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKG------RQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +   + +    +P+     I              ++ +    ++ D+LDE  +      
Sbjct: 440 KLEYDMKLISRMNPYASINYIRRGIGYDDFLAEYAEYRNINKEDLFDILDEIQSGAKGFA 499

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              Y    E I E  +    +  +  ++ N V + T+H++KGLE   V+++D    +   
Sbjct: 500 T--YEEWYEHIREYTKQMKLMALSKESDPNAVTLATLHSSKGLEFENVYIIDANEGIMP- 556

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                               K + +   EE  RL YVGMTRA  
Sbjct: 557 ----------------------------------YKKAVLEKDIEEERRLFYVGMTRAKT 582

Query: 661 QLIICKHSNTSNEKKSNQRTWYD 683
            L +    + +++     R   +
Sbjct: 583 SLSVYSVKSVNDKSAQASRFVRE 605


>gi|182684250|ref|YP_001835997.1| DNA-dependent ATPase I and helicase II [Streptococcus pneumoniae
           CGSP14]
 gi|221232029|ref|YP_002511181.1| putative DNA helicase II, UvrD [Streptococcus pneumoniae ATCC
           700669]
 gi|182629584|gb|ACB90532.1| DNA-dependent ATPase I and helicase II [Streptococcus pneumoniae
           CGSP14]
 gi|220674489|emb|CAR69050.1| putative DNA helicase II, UvrD [Streptococcus pneumoniae ATCC
           700669]
          Length = 1334

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 133/906 (14%), Positives = 287/906 (31%), Gaps = 177/906 (19%)

Query: 62  IEERFSLLSSFFLTQKFT-PQKNIITQEINKKSP---------DLKEKLKKSQD------ 105
                  L   F   K     K    +EI++            DL  K K +++      
Sbjct: 149 RYSAKDQLLELFYKMKRENLNKEDFEKEIDEYFKMIDLSIPGDDLYSKFKYARNSKSKDK 208

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
           +    +D+    ++ ++T   L   + +   Y      +   DF+D+I+ T + L++ + 
Sbjct: 209 KVGDYKDK-AINELKENTQKLLAGVE-IIEKYSSDISNHNYFDFDDMILWTIEKLEENEG 266

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +  +   I ++ +DE QDTS++Q +++  L +              +F VGD+ QS
Sbjct: 267 ---FQRSVSDTIRYLFVDEFQDTSVVQNKLVDLLVKG--------KDNPNIFVVGDDDQS 315

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY F G     +    +           K + I L  ++RS+  I+    ++ S     +
Sbjct: 316 IYRFQGVSANNIRDFDKKY---------KPTKIVLDENYRSSQAIIDASRQLISHNPREE 366

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            L   +     +                               +        + + A + 
Sbjct: 367 KLLIAAGANKDY------------------------------DYQLPILKSYENAKAEMF 396

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              +   I  +I +           +   +I V+  +         + R    D  I V 
Sbjct: 397 --GVLTEIKELIDSG----------VSPNEIGVIYGRNSYGEEFAKILR----DKGIFVQ 440

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             +   L      K ++A+ +++     D+         L      D F++   +     
Sbjct: 441 MKENKDLFSEPFFKKIVAILKYLCKPSRDVRE-------LRKIVYFDFFEVVLSQIVMIR 493

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIA-QFCSPHDFFTLILGAKKGRQQFISRFGNE 524
             +  +K +   I++    ++ I + ++ + ++ SP    + +L +    +  +      
Sbjct: 494 NLKKDEKISIPTIAEIDQKLEIIRKKVNQSSKYLSPMYVLSDVLKSLSIDEYIMKSKEKY 553

Query: 525 VI-DVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSAN-----HNEVRIMTV 577
            +  VL+E     L         +++  +++L             +      N V++MT 
Sbjct: 554 HLVSVLNELYKLMLMECHIHPKLTVKGFLNQLSALEEMGISLPIEDISGSPSNCVQLMTA 613

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE   VF++         +                         S    ++   +
Sbjct: 614 HGSKGLEFDHVFIMKCNDGKKKSEAWPGGE-------------NNSGRFSYPPSLNGKDE 660

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           +  +  +EE  RL YV MTRA   L +   ++++          + +       DE    
Sbjct: 661 NESQLKEEENRRLFYVAMTRAKKVLHLSYANDSTKT--------HLINEFEEFIDEVDVT 712

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
               +  + D+ +  ++S +       E   ++  L    K P                 
Sbjct: 713 ESFEDCQSVDKVVMPKFSNNVINEIFDELSLSVSTLNSFLKCP----------------- 755

Query: 758 NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---FTLPEHKRKNFITSY-CTKNA 813
               +       L+     N+    G IIH++L+ I       +       T     +  
Sbjct: 756 ----LSFYFNKGLKLPSETNEAMVFGSIIHEVLEKIYISVDGSQSSELTAKTVLSLEEAL 811

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTT-------------AMSCDSYS-EVSVSG------ 853
           KL+     +      +  ++                    +     + EV + G      
Sbjct: 812 KLFETVFEEKSYQLTSNKIKKDDYARGKKIIENLYKKSGYLKDGVVAVEVPIQGIRLGDI 871

Query: 854 ---KINC-PKKDIIISGRIDQISISQQNIFIFEYKTHH--------HVPQEIEHIPYTHI 901
               ++     +I I+G+ID+I      + + +YKT +          P E E +   + 
Sbjct: 872 LNTTVDLSEVSNIEINGKIDKIECDGNIVCLVDYKTGNFENAKKKLVAPSEKEPLGGDYW 931

Query: 902 AQLSIY 907
            Q   Y
Sbjct: 932 RQAVFY 937



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 81/232 (34%), Gaps = 16/232 (6%)

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
            +T   E    ++     + +   K+ + L  P      +   L+ +   + G     + +
Sbjct: 1033 NTEALEVATYQQTRGNYKSLSVSKLNRYLRCPKSIYFEDVLQLSQAAGLSAGAKEKSTKI 1092

Query: 775  S---DNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT----SYCTKNAKLWPAKEYKNLLLS 827
            +          G  IH+ ++ I    + + ++ I     S  +   ++      + L   
Sbjct: 1093 TINHAPTGPVFGTAIHETMEKI-YKEDLQLEDAIEFYDSSLYSHQEEIIDTMSVEELKEY 1151

Query: 828  ITRLLENPMMTTAMSCDSYSE-VSVSGKINCP-KKDIIISGRIDQISISQQNIFIFEYKT 885
               LL N +    +      E VS+  ++      +  I+G ID++      I + +YKT
Sbjct: 1152 GHNLLTN-LFEHFIPNSLKGEHVSLEKELRVKLGDNYSINGIIDKLEFDNDLIRVVDYKT 1210

Query: 886  HHHVPQEIE-HIPYTHIAQLSIYEKILK---DSY-PNKSLVCLLIYVSEPKV 932
                    E  + + +  Q   Y  +L+   +    +K +    I++ +   
Sbjct: 1211 GSAQRGVEELEVGHDYWRQAVFYNLLLENSSEIDTTDKRIETQYIFLDDNST 1262


>gi|145636194|ref|ZP_01791864.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittHH]
 gi|145270716|gb|EDK10649.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittHH]
          Length = 861

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 135/857 (15%), Positives = 275/857 (32%), Gaps = 138/857 (16%)

Query: 136 HYEEAKKKNCVLD---------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           HY +  ++  +LD         F+DL+    + L+       +   I  +    +IDE Q
Sbjct: 13  HYRQGLQQK-LLDYKLNHQEKSFDDLLRLLCEALQG-AQGDELAEMIRFQYPFAMIDEFQ 70

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT   Q+ +   +  D                +GD KQ+IY F GA+    L+     Q 
Sbjct: 71  DTDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQS 124

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           R            L  ++RS  +++  V+ +F  P++       + T +  R        
Sbjct: 125 RFE----------LTKNYRSEKNLVDGVNALFDFPQSPFIYQNINFTAVDSR-------- 166

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-SN 365
                + +    + +  P    + +  D + +   A I A  I + + + +    +F + 
Sbjct: 167 ----DDHLRFYLNGKAEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAVENQAVFQNE 222

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              + +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+L  + 
Sbjct: 223 DTCKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKELAWVL 279

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           +  L+   +   +  + + LF  +  DI +I           E   +      +++Q   
Sbjct: 280 KACLNVA-ERPILNAIATALFGLNAADIHQIQQN--------EAYWQRWADSFAQYQQTW 330

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           +    L  + Q          +L    G +             L E L       ++  +
Sbjct: 331 QRQGILAMLHQILLEQGISERLLSQATGERDLTDFL------HLAEILQQAATLHESEAA 384

Query: 546 SLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            L     +++ +     +    +    V+I+++H +KGLE  +V+L             K
Sbjct: 385 LLSWFEKQIQGEGRQEAQIRLESERQLVKIVSIHKSKGLEYDLVWLPFLA-APSKDPSKK 443

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-- 662
            ++I  S   D  +     ++          +  L + T  E  RLLYV +TRA  Q+  
Sbjct: 444 DINIYYSKERDETLWDIENRN----------LNALCEETFAEELRLLYVALTRAKYQMAF 493

Query: 663 ---------------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK- 706
                          ++ +         S  +    ++       +   KI    ++   
Sbjct: 494 ALPTQFDKKWNALHYVLSQGEIGKEIALSVPKDTETLLQTFKEKMQDNVKICTKPNLEAF 553

Query: 707 ---------DEWIAYEWS---THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                    D++ A E++         T     E   +  +           + +D  + 
Sbjct: 554 PALSINTKNDDFKAAEFTGNIEQDWRITSFTSIEQAHRRQNYFTESAGKKHAVFDDAKDY 613

Query: 755 YILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
              N   I T      ES  L   +    G  +H+  +  +       +       +   
Sbjct: 614 DSQNSIEISTALLNESESSILDLPRGKQVGTALHRHFENCYFSDLANTEEIDKLRQSLQL 673

Query: 814 KLWPAKEYKNLLLSITRL-LENP---MMTTAMSCDSYSEVSV------------------ 851
                +  +N L  I+   L N     +    + D   E+                    
Sbjct: 674 DETFTEPLQNWLQQISHTPLSNEIGIALADLANKDCIKEMPFYLAIRAHFDVEAFNRALK 733

Query: 852 ------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHI 896
                 S  +   +   ++ G ID +       ++ +YK++              + E +
Sbjct: 734 AHHHLPSEPLQFEQIQGMVRGSIDLVFRHNGKYYLVDYKSNFLGSTLASYNQEALKKEML 793

Query: 897 PYTHIAQLSIYEKILKD 913
              +  Q  IY   L  
Sbjct: 794 HSHYDWQYLIYTLALHR 810


>gi|319442809|ref|ZP_07991965.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile DSM
            44702]
          Length = 1179

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 133/998 (13%), Positives = 271/998 (27%), Gaps = 153/998 (15%)

Query: 90   NKKSPDLKEKLKKSQDEFIKIRDRF--------NTYKMFKSTLASLTLAKYLNAHYEEAK 141
                 D+ ++ + +  E   + DR          T +     L        + A Y    
Sbjct: 182  LATFTDVDDECRATAAEIDGLPDRDGKALKGVDTTLRKIGDALVYRRELLEVVADYRARL 241

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
                ++ F   +     L+        +     +    +++DE QDT   Q  ++R L  
Sbjct: 242  ADRNLMTFGAQMSKAAQLVAAHPE---VGAAQRRRFRVVMLDEYQDTGHAQRVLLRGLFG 298

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                         T+ AVGD  QSIY F GA    +   +                 EL 
Sbjct: 299  ------GGVDPDLTVTAVGDPMQSIYGFRGATAANLTHFRTDFPTGTGKDATPARKRELT 352

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             S+R+ A +L + + V     +A G    ++ +        G       W     +    
Sbjct: 353  TSWRNPARVLDLANTVSRWSLDAAGTGSPASVSPLVSRPGAGTGDVKAAWFDTREEELVW 412

Query: 322  CNPQQESWTSYFDSLPQESSASIL-ARRIAYTISNMI--GTDTIFSNGKKRVIQAKDILV 378
               +  +     D+    S+A +L     A  I +++      +  +    +++  ++  
Sbjct: 413  LADELAARYHGRDTSRPFSAAVLLRKNAEATPIHDLLIEREVPVEMSAGPGLLEVPEVAD 472

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE------ 432
            +    +     +     L+    +        +      +  L    R + S++      
Sbjct: 473  VYATLRVLVDPSDDIALLRLLTGVRWNIGAADLQALARRVDQLSLRDRRVDSEDTENSDG 532

Query: 433  --DDLSFVCMLKSPLFNFSEDD------IFKICTQRHE-TETVYEYIQKF--------AN 475
              D+ + +  L +P    S         +  I          + E +           + 
Sbjct: 533  DADEPTGLTALVTPQPGDSPAMATVRERLADIDRDSSRVPVGLAEALADLRGMEEFGMSE 592

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLD 530
             G+ +   + + +  L   +     +D    I      R + ++R+  +         LD
Sbjct: 593  EGLQRLGDLGRELRFLRLQSLGKPLNDLVADIEQMCGVRTEVLTRYHRDRRRSIGASHLD 652

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESP 586
             F          S +S   L+  L       K           + V+++TVH AKGLE  
Sbjct: 653  RFAEVVRSFADLSGASPGALVDYLRAAEAREKGLDAGEVEKRSDCVQLLTVHKAKGLEWE 712

Query: 587  VVFLVD-------------------TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP--QS 625
            +V +                     T +++            P+      +         
Sbjct: 713  IVAVPHATRKTYADAVKRPTVESWTTNARILPSGLRGDATDDPTDITGMPVLDLSDVVDR 772

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            K            L     +E +RL YV +TRA + L++   +   + KK    +    +
Sbjct: 773  KGVVEAEDAFKVALGVHDAKEDDRLFYVAVTRAEETLLVSGAAFNKDAKKPVDPSVALTL 832

Query: 686  YDSFHNDERVKKIKLT---------NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                      + +            +++ + E    + S  H E+  +  E    +    
Sbjct: 833  IRDRLAASAPECLVTWSDLGMVYSKDALKRLEKAREDGSMQHREDAVMVPENPAARNDLV 892

Query: 737  QKIPKKLFSPIKNDINEP--YILNPSTIDTKGKTNLESLLSDNQTFNRGLII------HK 788
            +   ++L          P      P   D            D  T + G +         
Sbjct: 893  EAYVRELPKTPAAQWPRPTLTERLPGVADGADLVRAAMTARDATTPDTGTLAEEWARETA 952

Query: 789  LLQV------------------------------------------IFTLPEHKRKNFIT 806
            LL                                            +   P  KR     
Sbjct: 953  LLAREHREQTVPEVVVPLGSRLTATEAVALSRDPEEFARRRRRPVPLEPRPYTKRGTAFH 1012

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC------DSYSEVSVSGKINCPKK 860
            ++  ++       +   L  +    L +P++ T               VSV G  +    
Sbjct: 1013 NWVEQHYGSVGLFDEDELPGAADATLADPVLATLKQKFLDSVWADRVPVSVEGSYSVILA 1072

Query: 861  DIIISGRIDQISISQQ----NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
              +  GRID +            + ++KT                 QL++Y         
Sbjct: 1073 GHLFEGRIDAVFHDSDDPLTGWTVVDWKTGRKPTGRDLTDAS---LQLAVYRLAWAKLLS 1129

Query: 917  NK--------SLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
             +         +     YV   + +        +  A 
Sbjct: 1130 ARYGRPVDPADVRAAFHYVVSNETWEPGTLPSAEDLAG 1167


>gi|119900140|ref|YP_935353.1| ATP-dependent exoDNAse subunit beta [Azoarcus sp. BH72]
 gi|119672553|emb|CAL96467.1| ATP-dependent exoDNAse beta subunit [Azoarcus sp. BH72]
          Length = 1241

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 114/980 (11%), Positives = 253/980 (25%), Gaps = 133/980 (13%)

Query: 21   WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
            W         ++  +  ++   +      A+  +Q        +    L     ++    
Sbjct: 237  WGDGQGPCEAVSGALD-ALNKSSYKPDALARARRQWQDWLGAGDPRRALPGDKDSKLHLL 295

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
             +  +  ++ K           + D  +  R   +                         
Sbjct: 296  CEQFLAGKVKKGGSAPTGLFFAAADALLGARGAVDAAVDAARLQLLRRFLAEGAEELRRR 355

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            K++   + F+D++ N    L       W+   + Q     LIDE QDT  +Q+ +   + 
Sbjct: 356  KRERRQIAFDDILWNAYAALT-SGAQPWLAGALHQRYPAALIDEFQDTDPLQFAIFDRVY 414

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                   N      +LF VGD KQ+IYSF  A+    L  +              +   L
Sbjct: 415  -------NAEGRHGSLFLVGDPKQAIYSFRSADLHTYLAARDR----------ADACYTL 457

Query: 261  PLSFRSTADILTVVDKVFSIPE--------NAQGLSEDSTTTIRHRSSRIGQVGTVQLW- 311
              + RS+A ++   +++FS           + + +   +        +       ++LW 
Sbjct: 458  ATNQRSSAALIDACNRLFSANPAVFMLDGLDYRKVGAGTRPRPPLFDAADDNPAALRLWR 517

Query: 312  -EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              +  +   +      +          +++         A     +           +R 
Sbjct: 518  IPKDEALEAAAEEEGGDGGGGGHRLPREQALQRAARASAAEIARLLAAGAAGEVRIGERP 577

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +   DI VLVR       +            +  V   +  +      ++L  +   I  
Sbjct: 578  LAPADIAVLVRSHGQGARMRRALAAF----GVGSVELSQASVFHTEDAEELERVLIAIAE 633

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
               +   +  L                                     +    V+     
Sbjct: 634  PAREARVMAAL------------------ATAAMGYGAAAIAALAADEAALLRVLDRFAG 675

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSS 546
               I             +  +    + ++R   E        L E L             
Sbjct: 676  WREIWLARGFGVMLRRWMSDEGVAARLLARADGERRLTNLMHLAELLQQAAGTASPEVLL 735

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                    E+     +    ++ N V+I+T+H +KGLE  +VF                M
Sbjct: 736  RTLATRRAEEGGEAAQLRLESDRNLVQIVTIHRSKGLEYGIVFCPFLFDGYPPPAERGPM 795

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC- 665
                +   D G  +   +S         +   ++     E  RL YV +TRA  +  +  
Sbjct: 796  RAWHA---DDGTLVLDYRS--EAAADKTIAARIRAERMAEDMRLAYVALTRAVHRCYLVV 850

Query: 666  -KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS--------- 715
              ++  +  K     +   ++           +    + +   E  A             
Sbjct: 851  GCYARMAFGKPGYSESGRSLLNWMAAGAGLDPEAWAEHKMTPAEIDARWRGLVTTSGGVI 910

Query: 716  ----------THHPENTPLEREETIKQLMDEQKIPK----------KLFSPIKNDINEPY 755
                          ++   ER   + +        +                  D +   
Sbjct: 911  SLADLPAGEGEALAQDDGAERVPRVPRPPQVSAGWRIGSFSALIFGATHEQAARDHDARQ 970

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT---KN 812
            +              + +L   +    G  +H + + I           I S      + 
Sbjct: 971  VPVEPESPPAPPPAADDILRFPRGPVAGDCLHAVFERIDFTDPGGWDAAIESALADHPQR 1030

Query: 813  AKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEVSVSGK---------- 854
             +   A+ +  L   +  +L+ P         + T       +E+               
Sbjct: 1031 GEADGARLHAMLRSMLRDVLDAPLTAGPAPLRLGTLTMARRLTELGFHLPAPRVEAEALN 1090

Query: 855  ------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT--- 899
                        +     +  + G ID +       ++ ++K++H      ++ P     
Sbjct: 1091 AWLAARGYGVPRLAFTGLEGYLKGFIDLVFEHDGRYWVLDWKSNHLGNAPADYAPARLEA 1150

Query: 900  ------HIAQLSIYEKILKD 913
                  +  Q  +Y   L  
Sbjct: 1151 AMQAHGYHLQHLLYTVALHR 1170


>gi|226198600|ref|ZP_03794166.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            Pakistan 9]
 gi|225929343|gb|EEH25364.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            Pakistan 9]
          Length = 1270

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 130/1012 (12%), Positives = 285/1012 (28%), Gaps = 156/1012 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452  RYTLAVNQRSTPAIVGACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317  QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                        WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504  TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
              I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564  SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--------- 484
                   L S  F      ++++     E + +    +  +  G                
Sbjct: 620  LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASGNGGGARAASAGAPAPSPA 679

Query: 485  -------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFL 533
                   ++       + +       +  + G  +  ++ ++    E      + L E  
Sbjct: 680  DADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELT 739

Query: 534  NFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  +     +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF   
Sbjct: 740  QARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPF 799

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                         +      +D+ G  +        +       +   +    E  RL+Y
Sbjct: 800  LNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVY 857

Query: 653  VGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            V +TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++   + W 
Sbjct: 858  VALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQ 917

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----- 765
            A           P+           + +  +      +   +   I + S++ +      
Sbjct: 918  ALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDE 977

Query: 766  --------------------------------------------GKTNLESLLSDNQTFN 781
                                                         +   + +L+  +   
Sbjct: 978  SGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAEDDILAFPRGAA 1037

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
             G  +H+LL++                  +          + L   +TRL+ +       
Sbjct: 1038 AGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELV 1097

Query: 836  ---MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQ 870
                +         +E+           + +                      + G ID 
Sbjct: 1098 PGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDM 1157

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1158 IVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1209


>gi|182676893|ref|YP_001831040.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182636523|gb|ACB97296.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 730

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 100/718 (13%), Positives = 208/718 (28%), Gaps = 133/718 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  + I   L              +        P +       +             
Sbjct: 124 AASEMSDRIRAALQGGSTPSWLGTFHGLGARQLRAEPEVAGLRPNFEILDADDSRRLIKR 183

Query: 68  LLSSFFLTQKFT--PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           ++ S  L              + +  +    K+ L    +    ++ +          + 
Sbjct: 184 IMQSLNLNTDEQDNESGPEPIKRMINQISKFKDLLLSPDEAPAYVQKKIAEANAIGEPIH 243

Query: 126 SLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
             +L  A  + A Y++  +     DF DL++     L +    A  R +  +  + IL D
Sbjct: 244 PASLFNAARIYALYQQRLRDQNSADFGDLLLWPTRALLRD---AAYRTRWARRFDCILAD 300

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QD +  Q++ +R+L  +             +F VGD+ Q+IY + GA+   + R  + 
Sbjct: 301 EYQDVNYAQYQWLRALAFE----------HHRIFCVGDDDQAIYGWRGADITYIRRFTQD 350

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +         S+I L  +FRST  IL   + V +   +  G +  +            
Sbjct: 351 FPQ--------ASVIRLEENFRSTGAILASANAVIARDPHRLGKTLFTNK---------- 392

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                                    +    + +         A  I   I          
Sbjct: 393 ------------------------GYGQPIEVVAYR-YCDGEAHGIVEEIKKRHAEG--- 424

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                  +   ++ +L R    +              KI  V            IKD +A
Sbjct: 425 -------VDFAEMAILYRNNFFSRGFEECL----VRAKIPYVIVGDVGFYQRAEIKDTLA 473

Query: 424 LGRFILSQED---DLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQ--KFANCG 477
             R   + +D   D +   ++  P   F +  +  +  + +    +++  I+    ++  
Sbjct: 474 FLRIATTPDDRQSDEALRRVINEPRRGFGKKAMAILEEEANFRHLSLFRAIETATLSSAC 533

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI---SRFGNEVIDVLDEFLN 534
                  +  I ++       +  D  +L+L A   R       +  G   ++ + E L+
Sbjct: 534 RKAGLMFVAAIEKVAKD-PSLTLADQLSLLLDATGYRAMLQASKAEDGKARLENISELLH 592

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                              L+       R +      +++MT+H +KGLE   VFL    
Sbjct: 593 LAGSFHDAH--------ELLDHAALASSRPNENEEGRLKLMTLHKSKGLEFEHVFLPGWE 644

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F   +                                          +E  RL YV 
Sbjct: 645 DGIFPAGNS---------------------------------------DLDEERRLAYVA 665

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           +TRA  +  I           ++  ++   +      +  ++   L     + +  A+
Sbjct: 666 ITRAKRRAAITYCEYRRG--LADPSSFIADIPPQHRIEGWLRDDGLPPVQRERKANAW 721


>gi|119357210|ref|YP_911854.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Chlorobium
            phaeobacteroides DSM 266]
 gi|119354559|gb|ABL65430.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Chlorobium
            phaeobacteroides DSM 266]
          Length = 1221

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 118/1078 (10%), Positives = 275/1078 (25%), Gaps = 218/1078 (20%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ----ASQTQCIE 63
               E+     + +W      VS + +       +       + + L          +   
Sbjct: 215  HEAEAAFDEVRRIWSEEKAPVSTLLRTGKALSRSEKAYRADRVEQLLSDMEVFVAAENPF 274

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              F        +      K+  T   +         L  + +      D        +  
Sbjct: 275  GLFDGFDKLTTSGIAAGTKSSGTPPSHP--------LFDACERLQAAADERLLALKSE-- 324

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI-------------- 169
                 +  +      E KK+  +  F+DL+ +    L+    SA I              
Sbjct: 325  -----VVAFYRKRLPERKKERNIRFFDDLLADLYQALQGGYESAAIIQGGAESVAISGGA 379

Query: 170  ------RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                     + +     LIDE QDT  +Q+++ R +                LF +GD K
Sbjct: 380  ESAAALAEALRKRYRAALIDEFQDTDPVQYDIFRRIYAGSEAP---------LFLIGDPK 430

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IYSF GA+    ++      +             L  ++RS   +L   + +F    +
Sbjct: 431  QAIYSFRGADIFAYMQAASDVGRE--------RSFTLNTNWRSVPKLLDAFNLLFDSARH 482

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                    +  +           +     ++        +   +S         +  +A 
Sbjct: 483  PFVFDNIPSPPLVAGKGLPRDAESPVSPLEICLLRSGDGDGSLKS------GESERFAAG 536

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              A  +  TI+                    DI V+VR  +   ++    R       I 
Sbjct: 537  ACASMVTETINGGSDAG--------------DIAVIVRTHRQARMMQAALREC----GIV 578

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
             V      +   +  +++  L   +     +      L +PLF  +  DI ++       
Sbjct: 579  SVMRSDESVFASVEAEEVRILVTALAEPGRESLVRAALVTPLFGLNGSDIARLN------ 632

Query: 464  ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                       N  + + Q   +Y              +        ++         G 
Sbjct: 633  --------DDENAWVERLQQFREYHRLWQERGFMLMVRELMRHEAVRERLLA-LSGSSGE 683

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTV 577
              +  +        R   +    ++ L++         +     +    ++   VRI+T 
Sbjct: 684  RALTNVLHCFELLHREAHSRGLGMEGLVTWFGERVAAREPGEEYQIRLESDEPAVRIVTA 743

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H +KGL+ P+VF         S   +   H                +    +  +     
Sbjct: 744  HVSKGLQYPIVFCPFQFGGAGSGGDVVLFHDDDG----------RMKRDFGSRAIEHHRA 793

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT----------------W 681
               + +  E  RL YV +TRA  + I          +                       
Sbjct: 794  LASRESLAENLRLFYVALTRAERRCIFFTARIVDGRQSGRTPMLSPSSYLLYVSDEARQS 853

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              ++ ++ H    +   ++   +      +       P +   +    + +         
Sbjct: 854  PRVIGEAQHELAALDAGEMAERLQSMSDESGGAIRLRPLSLDDDLTLPLVRTAAAASPSF 913

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESL-------------------------LSD 776
             L     +   +  I + +T+        E                            + 
Sbjct: 914  VLREFTASIETDWRIASFTTLSRHRHMAFELPDRDESAPEQQAAAAPAVLPDTDRSIFAF 973

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
             +    G+++H + + +      +      S    +   +       L   + ++L  P+
Sbjct: 974  PKGAGAGILMHSIFETLDFAFATESVIDEASVRALDRYGYDRHWQPCLTGMVRQVLSTPL 1033

Query: 837  --------MTTAMSCDSYSEVSVSGK-------------------------------INC 857
                    +         +E+                                    ++ 
Sbjct: 1034 SSPEGSFTLGGLRQGSWSTELEFFFPLRHVTSPRLSELLMRHGVIPNGADPAAALQALDF 1093

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYE 908
                 ++ G +D +  ++   ++ ++K++H       +             +  Q  +Y 
Sbjct: 1094 TPVKGMLMGFMDMVFEAEGRYYLLDWKSNHLGNAVEAYHRDHLGKAMQENLYRLQYLLYT 1153

Query: 909  KILKDSY----PNKSLVCLL-----IYVSE---------PKVFIIPQNKLNKAFAEIS 948
              L        P             +++                +P   L +   E+ 
Sbjct: 1154 VALDRFLSLRVPGYRYETHFGGAIYVFLRGVSAERGEEYGFFRDLPPEALIRELQELL 1211


>gi|187735189|ref|YP_001877301.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425241|gb|ACD04520.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835]
          Length = 669

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 119/707 (16%), Positives = 224/707 (31%), Gaps = 145/707 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+  W L +      N  +          + ++ ++L     ++     
Sbjct: 46  GAGSGKTRTLTYRVAWLLDHGTDP-WNILLLTFTNKAAREMTERVRSLIPLDLSRLWSGT 104

Query: 66  FSLLSS--------------FFLTQKFTPQKNIIT----------QEINKKSPDLKEKLK 101
           F  +++               F       +K++I           +      P++   L 
Sbjct: 105 FHSIANRILRQHAEYLGYTPAFTIMDSDDRKSMIKSVVKSLKLDEKSTRFPKPEVLSSLF 164

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
              D                 +     + + ++  Y   K++   +DF+DL++N   L +
Sbjct: 165 SLADNEGANIRETQENAYPYLSNHLDAILE-VHDQYVARKQETNSMDFDDLLLNVVRLFQ 223

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           +++    +R        HIL+DE QDT+ +Q  +I  L  +             L  VGD
Sbjct: 224 EQEH---LRALYGSRFQHILVDEYQDTNYLQSRLIDMLARE----------HGQLMVVGD 270

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIYS+ GA+ + +L                    ++  ++RS  +IL + +   +  
Sbjct: 271 DAQSIYSWRGADMENILSFTTRYPA--------AKTFKIETNYRSVPEILELSNAAIAAN 322

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E        S                 ++   +V  +D +                    
Sbjct: 323 EVQIEKQLRSVRPTG------------EMPPALVPLNDDR-------------------- 350

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             + A+ +   I ++I   T             +I VL R    +       +      +
Sbjct: 351 --MQAKFVVQRIRDLIEEGT----------DPSEIAVLYRAHFHS----MELQMELTRGE 394

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC-MLKSPLFNFSEDDIFKICT-- 458
           I           +   IKD++A  RF+++  D+LSF   ++  P           I    
Sbjct: 395 IPFRITSGIRFFEQAHIKDVVAFMRFVVNPRDELSFRRMVMLLPGIGPGMAQKLWIRWTA 454

Query: 459 ---QRHETETVYEYIQKFANCGISKFQHVIKYIH-ELIHIAQFCSPHDFFTLILGA---- 510
               R ET               +K +     +   L  +A         +++L      
Sbjct: 455 CPESRQETPPESFSALMLDFPVPAKSRTAWTQLCYTLDELAPAGKLAGPASMLLSINEAV 514

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-- 568
                Q      ++    L     F+ R E       ++ +S+L     T   + +A+  
Sbjct: 515 YDEYMQAAFENYDQRRQDLLHLAGFSERFEST-----EDFLSQLSLLGNTDDESAAADFS 569

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V + T+H AKGLE  VVFL+     +F H+                           
Sbjct: 570 GGSVTLSTIHQAKGLEWSVVFLIGLCDGMFPHQR-------------------------- 603

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                 +I     +  EE  RL YVG+TRA DQL +         + 
Sbjct: 604 ------VIDDGDLAGLEEERRLFYVGITRAKDQLYLTYPRWNCRAQG 644


>gi|157738272|ref|YP_001490956.1| putative recombination protein RecB [Arcobacter butzleri RM4018]
 gi|157700126|gb|ABV68286.1| ATP-dependent DNA helicase, UvrD/REP family [Arcobacter butzleri
           RM4018]
          Length = 910

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 143/904 (15%), Positives = 301/904 (33%), Gaps = 199/904 (22%)

Query: 36  SLSMETGNPTILKKAQTLQQ-------ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88
           +  +E     ILK+A  +++       AS +      F      F       +  +  + 
Sbjct: 184 ASLIELQKENILKEAFKIKESILSCINASNSAKNAVDFETFEDLF------GRTWLEKEN 237

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKN 144
               S   K   + S+ +F+K+++  + Y   ++  +   + + +   + + K    K  
Sbjct: 238 FEDYSYFKKCANESSKSDFLKLKEELSIYYKIRAGFSLNKIFE-VYLKFRDFKFEFNKNK 296

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             L+F D+     DLL  +    ++ +++D   +HILIDE QDTSL+Q++++  L ++  
Sbjct: 297 NYLEFNDISNLVYDLLSTKIDKDFLYFRLDSNYSHILIDEFQDTSLLQYKILEPLIDEIL 356

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
            G    +  +T F VGD KQSIY F G         KR       N  +   +  L  ++
Sbjct: 357 SGD--VTKFKTFFYVGDTKQSIYRFRGG--------KRELFDYVANTNKILEVEVLNTNY 406

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS  +++  V+++F    N +   ++S              G V++      + +   N 
Sbjct: 407 RSCENVINFVNELFLNLPNYEYFKQESVR----------ANGYVEVVVDTAFEEEKFVN- 455

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                                   +A  I  ++ +           +   DI +L     
Sbjct: 456 ------------------------VAKKIEELLQSG----------VNFNDIAILTYTND 481

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
           D   + +  +      KIS        L +   +K ++   ++I                
Sbjct: 482 DVLSLYYYLKQKFPSIKISTEMTS--KLINQQNVKAVINAIKYIYF-------------- 525

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                +++I+K          +   +    N      Q VIK + + + I          
Sbjct: 526 -----KEEIYKENLNAIIGNKLLTTLDLEINLEEKSVQEVIKELSKKLKII--------- 571

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                                 + + + +  +             ++  + +        
Sbjct: 572 ---------------------DENIIKLIEVSSSF--------NNIVDFVYEIDKLEAIM 602

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            ++    ++I+T+  +KGLE   V L+D   +    K    +       +   I   I  
Sbjct: 603 ENSESKGLQILTIFKSKGLEFHTVILLDRIKRKNVDKSS--LLFDYENLELKNIFYKIKG 660

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
            ++ N      I   KK + E+   +LYV MTRA + +II         KK     +  +
Sbjct: 661 YENFNEDYKKAIDKEKKLSLEDEINILYVAMTRAKNNMIIF--------KKEKSSVFDIL 712

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
             +     + +    L  +I +   I+Y       +   + +E+ +K+     +      
Sbjct: 713 NMNVCKIGKIINSSNLVKNIEEKSMISYTPLNLGIQEKQIVKEKELKENHLHSRY----- 767

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
                                                 GL  H  L+++     +  K  
Sbjct: 768 -------------------------------------FGLATHYCLEMLNNFSFNDLKYT 790

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EVSVSGKINCPKKDII 863
           +    T+ +     K++ ++   +T L+ N      ++    + E S+  K         
Sbjct: 791 LNLARTRFSNYLSDKDFVDIENRLTHLINNDFFKFLITNSVLTSEQSLIYKEELK----- 845

Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
               ID +       +I +YKT        E +   H  Q+  Y++ +K+ +   ++   
Sbjct: 846 ---IIDLLIYKDDTYYILDYKT------TKEELDEEHKNQVLYYKEAIKEIFKTSNVKSY 896

Query: 924 LIYV 927
           L+Y+
Sbjct: 897 LVYL 900


>gi|256396909|ref|YP_003118473.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
 gi|256363135|gb|ACU76632.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
          Length = 1134

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 123/979 (12%), Positives = 262/979 (26%), Gaps = 189/979 (19%)

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
              +  + T+   ++   +      ++   + +          ++       A      Y 
Sbjct: 170  DLRAALATRGFAEELRTVL-----ARARELGLDPTELAQAARRADRGDWYAASAFFEEYL 224

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            +      VLD+ +L+     L  + D    +R ++  +   + +DE QDT   Q  ++++
Sbjct: 225  DVLDVQGVLDYGELVHRAVLLAGQED----VRRELRHDFRAVFVDEYQDTDPSQVRLLQA 280

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            L  D             L   GD  QSIY F GA+ + +L      ++     G      
Sbjct: 281  LAGD----------GADLVVFGDPDQSIYQFRGADVRGILDFPEAFRR---MDGSPADTA 327

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  S R    +L     +                              + L      + 
Sbjct: 328  VLRTSRRCGPALLKASRDLTRRMP-------------------------IPLLPTEKVRE 362

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                  +             +             I +M+    +        +   +I V
Sbjct: 363  HRDLAAEGPVADGEPIEGSVQVFTFPTPNTELDNIVDMVRRAHLED-----GVPWDEIAV 417

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFILTDHLAIKDLMALGRFILSQED--DL 435
            LVR    +       R       + V    D   L    A+  L+   R   ++      
Sbjct: 418  LVRSATRSI---PALRRALIAAGVPVDTSGDELPLAAEPAVAVLLQALRVADNEAALTPD 474

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--------------------------- 468
                +L  PL      ++ K+       E                               
Sbjct: 475  VARALLSGPLGGMDAFELRKLARALRAEERAANQNGVRGVPAEHSAVVPELARITEPSVN 534

Query: 469  -------------YIQKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGA 510
                                          + +  L+   +       S       +   
Sbjct: 535  GVRPSEVLLREALAEPARLVAMDEDVAEPARRLGMLLLRTRQILRGGGSVERALWELWSG 594

Query: 511  KKGRQ------QFISRF----------GNEVIDVLDE----FLNFTLRNEQNSYSSLQEL 550
                +      ++  R           G      LD     F       ++ +   ++  
Sbjct: 595  GGDERDRNRAHRWPERLERTAQRGGNTGRAADRDLDAVCVLFDYAARAEDRATGRGVRNF 654

Query: 551  ISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            I++LE          A S+    VR+M+ H +KGL+   V +      ++    ++   +
Sbjct: 655  IADLEAQELAGDSMAAQSSRGGAVRLMSAHKSKGLQWRFVIVAGVQDGLWPDLRLRGSLL 714

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
               L    G+        +                  E  RL YV  TRA ++L++    
Sbjct: 715  QADLIGRNGLRSMEEIPTAST-------------LLAEERRLFYVAATRARERLVVTAVD 761

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
            +      +        VY+     + +  ++                   P+++   R+ 
Sbjct: 762  SALIGDDAAAEAPSRFVYELGVEVQPLPGLRKRALAIPALVADLRRVLTDPKSSDQLRQA 821

Query: 729  TIKQLMDEQKIPKKLFSP---------------------IKNDINEPYILNPSTIDTKGK 767
              ++L            P                        D  +P +L+ S +    +
Sbjct: 822  AAERLARLADAQAGDGRPLVPSAHPDKWWGLVEETASEQPVRDPAKPLLLSASQVAAIDE 881

Query: 768  TNLESLLSDNQTFN--------RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
             +L   L      +         G ++H L   +       R + +     +       +
Sbjct: 882  CSLRWFLDHEAAAHEQKTVALGFGNVVHVLADEVAKGDTPARLDVLMERLDRVWDRLSFE 941

Query: 820  ---EYKNLLLSITRLLENPMMTTAMSCDSY---SEVSVSGKINCPKK--------DIIIS 865
               +           LE  +             SE     ++N            D+ I 
Sbjct: 942  AQWQSPQQKEEARAALERFLAWHVTDRGRLLHSSEQEFDVRLNVGAGDSEDGEGFDLRIR 1001

Query: 866  GRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK----DSYPNKSL 920
            G  D++   +   +++ ++KT  +VP + E        QL++Y+ +++        N+S 
Sbjct: 1002 GSFDRVETDEAGLVYVVDFKTGKNVPTKNEAQE---HPQLAVYQLVVREGAIQGVSNESG 1058

Query: 921  VCLLIYVSEPKVFIIPQNK 939
               L+++ E     +P+  
Sbjct: 1059 GAELVFLREGDAAGLPKTA 1077


>gi|313886343|ref|ZP_07820068.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924212|gb|EFR34996.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 785

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 109/732 (14%), Positives = 211/732 (28%), Gaps = 144/732 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           KN     + K+  D K  L   Q            Y           L     + Y +  
Sbjct: 132 KNYTPTRVLKRISDAKNMLISPQA--YAANQEIRKYDTMNHEGELYKL----YSLYTQRC 185

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K++  +DF+DL+   N L++    +     +I   I+ +LIDE QDT+  Q+E+ R L  
Sbjct: 186 KESNSMDFDDLLFLLNVLIRDFPEA---HQEIKSGIDFLLIDEYQDTNTSQFELARHLVA 242

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D             +FAVGD+ QSIYSF GA    +L  K+              + +L 
Sbjct: 243 D----------HNRIFAVGDDAQSIYSFRGARIANILSFKQAF--------AGAKLFKLE 284

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST  I++  + +    +                              + V     +
Sbjct: 285 QNYRSTGHIVSSANALIEHNQQR--------------------------IPKEVYTDLGE 318

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
               Q    +  D           A R+   I+     +          I   +  +L R
Sbjct: 319 GEKLQLYHYTSSDE---------EATRLIDIITQRHDEEQ---------IPLSEQTILYR 360

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +     +         I  V            IKD +A  + I++  ++L+    +
Sbjct: 361 TNAQSRKFEEVL----LSEGIPYVIYGGMAFYARAEIKDAIAYLQLIINPHNELALRRAI 416

Query: 442 KSPLFNFSEDDIFKICTQRHE---TETVYEYIQK---------FANCGISKFQHVIKYIH 489
             P     +  + K+     +     ++Y+ +            +    +K    +  I 
Sbjct: 417 AYPRKGIGDKTLEKVALYAQQQSPQLSLYDALCAAIDSADPVGLSRGVRNKIASFVNLID 476

Query: 490 ELI-HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS 545
            L      +    ++   IL       +       E     D L EF++     E     
Sbjct: 477 SLATAYQHYAKLEEWIAHILRESGIVAELTREDTIESQAKLDNLKEFVSSASEFEARYRQ 536

Query: 546 S--------------LQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                          L     ++     +      + + +   + +++MT+H AKGLE P
Sbjct: 537 DPLNLFAEEPLSTEMLSAFAQQIPLLTNQDQDNVEQHSGATPQDRLQLMTIHAAKGLEFP 596

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V++      +                                               EE
Sbjct: 597 YVYIAGVEENLLPSSRSLDT----------------------------------AEMIEE 622

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RLLYVG+TRA     +   S  +   K+        + +       + +       + 
Sbjct: 623 ERRLLYVGITRAQKLCTLSYTSIRTRNGKTELMIPSRFIAELPRAHYTLHEEADPIGTSV 682

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +       ++      +R  T            +      + +N    ++   +  + 
Sbjct: 683 SSYATSYQPINYSSPATAQRPTTSATSTSSSTATAQQMLAKSSPVNALESIDGYHVGDRV 742

Query: 767 KTNLESLLSDNQ 778
           +          +
Sbjct: 743 RHPRHGDGKIER 754


>gi|15606167|ref|NP_213544.1| ATP-dependent DNA helicase REP [Aquifex aeolicus VF5]
 gi|2983362|gb|AAC06949.1| ATP-dependent DNA helicase REP [Aquifex aeolicus VF5]
          Length = 669

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 114/651 (17%), Positives = 220/651 (33%), Gaps = 121/651 (18%)

Query: 43  NPTILKKAQTLQQASQTQ-CIEERFSLLSSFFLTQKFTP---QKNIITQEINKKSPDLKE 98
           N    +  + ++     +      F  ++   L +        K+    +    +  +KE
Sbjct: 57  NKAAKEIKERIKNTFGLELEWSGTFHSVALKILKKDGEKIGIPKDFSIADEKDTTLIVKE 116

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            LKK   +      +    K+ ++          L   Y+   ++N +LDF DL+    +
Sbjct: 117 ILKKYGLKKEPEEVKEKISKVKENFEEPEAWLGVLLEEYQRVLRENKLLDFSDLMRELYN 176

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL    +   +R K      +I++DE QDT+ IQ+E+++ L              + + A
Sbjct: 177 LL----LVDEVREKYRNTFKYIMVDEYQDTNNIQYEILKLLA------------NKNICA 220

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           +GD  Q IY +  A P  +LR                 II+L L++RS   IL V + V 
Sbjct: 221 IGDPNQCIYEWRDARPDNILRFIEDF---------NPKIIKLELNYRSREPILRVANAVL 271

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                                       T++  + +      +   Q+     + D   +
Sbjct: 272 E-------------------------ASTLEWKDLIPKLRGVRGEGQKPYVRRFQDEEEE 306

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  I+  I  + G             + KDI VLVR       IT +      
Sbjct: 307 -------ALWISRKIKELAGE-----------YELKDIAVLVR----VGYITDVFERTFF 344

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I           + + IK+L+AL R I +  D+++F  + +  +  F +   F++  
Sbjct: 345 KAGIPYKVVGTIKFYERIEIKNLIALLRLIYNPSDEVAFKRLTEFFVKGFGDKS-FEVVK 403

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQF 517
           +  +        +       +      +++  ++ + +     H+     +      +  
Sbjct: 404 KNFKGNWFKALKESLKKLPKNAAISAYEFLKAVVPLYKNPEKYHEGLEAFVEKIDYYELL 463

Query: 518 ISRF---GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
             +F     E I+ + EFL+        +Y +L++L++E+       +       N V+I
Sbjct: 464 KEKFKKDYEERIENVKEFLSSLKDFYAKAY-TLEDLLAEITLTSEEEEE-----ENAVKI 517

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           +T+H+AKGLE PVVFL      +  H   ++                             
Sbjct: 518 LTIHSAKGLEFPVVFLPRLEEGILPHHRSQESERELEEERRL------------------ 559

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                            YV +TRA D L +      + +           +
Sbjct: 560 ----------------FYVAITRAKDLLFMSYTKKENRKPSRFLSDIPKHL 594


>gi|167758421|ref|ZP_02430548.1| hypothetical protein CLOSCI_00761 [Clostridium scindens ATCC 35704]
 gi|167664318|gb|EDS08448.1| hypothetical protein CLOSCI_00761 [Clostridium scindens ATCC 35704]
          Length = 615

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 114/602 (18%), Positives = 198/602 (32%), Gaps = 121/602 (20%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
            + + + K+ L+    E   +++     K F+S        + L   YEEAK++   LDF
Sbjct: 124 LEDAGEEKDNLQDLAIEIGNVKNNCLDIKTFESIRFGAGPFRELYQAYEEAKQRLRKLDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           ED+++   DL  K      I  K  Q+  +IL+DE QD +  Q++VIR L          
Sbjct: 184 EDMLLMCRDLFLK---RRDILEKWQQKFRYILVDEFQDVNQAQYDVIRMLAA-------- 232

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 LF VGD+ QSIY F GA+P  ++                   I L +++RS+A 
Sbjct: 233 --PEDNLFIVGDDDQSIYGFRGAKPGIMMEFANDYPN--------ARQILLNVNYRSSAH 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+    +V    +        +                             Q   +    
Sbjct: 283 IVNGALRVIGHNKTRFDKEIAA----------------------------KQKAGETIHV 314

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               D + +        R +   I                 I    + VL R   D  ++
Sbjct: 315 QEVKDPVEES-------RYVLERIQEYQSQG----------IPYSQMAVLYRTSLDARML 357

Query: 390 TFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
           +         Y++     +R   + +H    D+ +       +++   F+ +   P    
Sbjct: 358 SETLME----YQVPFTMKERLNNIYEHFIGTDISSYFHLAKGEQERKYFLQIANRPNRYI 413

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
             D    +   +   ET+  +    A       Q+ I  +   + +    +P+     I 
Sbjct: 414 GRDS---MSESKVTYETLRNFYCDKAWM-----QNRIDQLEWDMKMICNKTPYAAIQYI- 464

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAH- 565
               G  +++  +        +E +      +QN   Y S+ E    +E+Y   +     
Sbjct: 465 RKSMGYDEYLREYAVYRQMQPEELMAVLEEIQQNSKEYQSIDEWFEHVERYKEMLTEQAR 524

Query: 566 ---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
              S     V +MT+H  KGLE   VF++        +K  K                  
Sbjct: 525 KSRSQGGEGVALMTMHGVKGLEYDTVFIIQGNEGSIPYKKAKSP---------------- 568

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                 EE  RL YV MTRA  +LII      + +  S  R   
Sbjct: 569 -------------------DDIEEERRLFYVAMTRAKRKLIISYVKEKNGKSLSPSRFVN 609

Query: 683 DM 684
           ++
Sbjct: 610 EL 611


>gi|332180434|gb|AEE16122.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
          Length = 1299

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 150/1017 (14%), Positives = 270/1017 (26%), Gaps = 196/1017 (19%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +       D     K++  E   +            +   + L    +A +   K+ N  
Sbjct: 296  KIRKTGKHDAIALFKQAAAETEPLASAAALLLQAGVSADIMPLLDTFSAQFLTWKRTNGK 355

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            L F+D+      +LK       IR    Q  + I+IDE QD + +Q +++  L E     
Sbjct: 356  LTFDDVASLAVTILKNE---TDIRRNEKQSFDAIMIDEFQDNNAVQRDMLFLLAEKRDRL 412

Query: 207  KNTHSSPRT-----LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
             +   S        LF VGDEKQSIY F GA+                       ++ L 
Sbjct: 413  TDGIPSADDVCPDKLFFVGDEKQSIYRFRGADVSVFRSLTETLP--------STDMLRLR 464

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG--------------- 306
             ++RS   ++   + +FS   +                      G               
Sbjct: 465  CNYRSEPALVYASNLLFSGRTSDPAPEPSDPREEPEAREESESPGIFLNAALRDFPEYEA 524

Query: 307  ------------------------------TVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
                                           V +     ++ +   + +  +     D+ 
Sbjct: 525  ACTPALVPPSIAAQKTENGADVSGQDGLTPRVHVCLLDKAEPEESEDSETAAEKDEIDAA 584

Query: 337  PQE-SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +E S+    A  IA  I  +       + G     + +D  VL+R            R 
Sbjct: 585  AEELSAVENEALFIAKKIHEL-------TCGPNARYRTQDCAVLLRSYSKQIFYEKSLRE 637

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  I  V  +         + D++ L R      D LS+  +L SP    S   + +
Sbjct: 638  ----AGIPYVTENIVSFFADAPVNDILHLLRLAAYPADVLSYAAVLASPFAGLSPSGVAR 693

Query: 456  ICT-------------QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                                        +       + ++        L   A+  S  D
Sbjct: 694  CLEFHTAAGINTIPADAAQPLPFSRGADELLDEDDAAAYRSGRARYERLAARARSASVAD 753

Query: 503  FFTLILGAKKGRQQ-FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
              T +   +  R +   S+      ++ D       + +  S  SL +   +L +     
Sbjct: 754  VITGLWYDEGYRYETLWSQNTALYRELYDYLYELARQADDQSL-SLADFADDLYRLRQDG 812

Query: 562  KRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
             R             VRIM++H +KGL+ PVVF+ DT ++   +     +  +P +    
Sbjct: 813  SRIDDMEIPLDRPPAVRIMSIHKSKGLQFPVVFICDTAAKAGGNFSEAYVSRIPIVPGAG 872

Query: 617  GIPIWIPQSKSR---------NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
               +  P              +                E  RL YV +TRA  ++ +   
Sbjct: 873  DSMVLKPPVPDALRSAGKVPCDYFTRKFRAVQNAKEHAELRRLFYVALTRAEKEVYVSAA 932

Query: 668  SN------------------TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             +                       ++                + V        +     
Sbjct: 933  LDLKLEAEETLEQAVVRYTAAKTAAQAENDAKKGTAALVSFGHDAVLHNGTIIGLVLPVL 992

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP----------------------- 746
             A+   + HP    LER     +   +  +     S                        
Sbjct: 993  SAWIGRSPHPPFFTLERIPLWNRPQSKSLLRTMHRSRGADRTKRDVQRKAAPQYAACTQE 1052

Query: 747  --IKNDINEPYILNPSTIDTKGKTNLESLLSDN--------------------------- 777
              ++     P    PST+ T+                                       
Sbjct: 1053 KLLRVQPVPPDRFTPSTLGTEPMPRPLQPELFEPAADTAEWAELDAVLNEFKTLADITGS 1112

Query: 778  -----QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                    + G + H     I  L                     A           R  
Sbjct: 1113 DAIAFTAADFGTLAHA---HIEALLTGNPLGAEIRGAATLTPRQLAVVTGAAQRMAERFA 1169

Query: 833  ENPMMTTAMSCDSY-SEVSVSGKI-NCPKKDIIISGRIDQIS--------ISQQNIFIFE 882
             + +   A +     SE     +I      D  I G ID +          +++ +F+ +
Sbjct: 1170 ASELAAAARAAHWRESEYPFRSRIKTAAGTDAFIEGAIDLLFTGTFPAGAQAERELFVVD 1229

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            +KT        +  P  H+AQL+ Y K   D        C+L Y+       +    
Sbjct: 1230 FKTDT------DVRPDRHVAQLACYRKAALDITGETKCRCILYYLRSGTAVDVSAQA 1280


>gi|116671302|ref|YP_832235.1| UvrD/REP helicase [Arthrobacter sp. FB24]
 gi|116611411|gb|ABK04135.1| UvrD/REP helicase [Arthrobacter sp. FB24]
          Length = 1183

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 132/861 (15%), Positives = 236/861 (27%), Gaps = 117/861 (13%)

Query: 39  METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI--NKKSPDL 96
           +  G    +      Q       + E F      F   K T  K +I       +   D 
Sbjct: 141 LRLGVERDVVLLGGAQAWQLASEVVEAFDGEYEHFRAAKSTLVKAVIQLAGECAEHLRDP 200

Query: 97  KEKLKKSQDEFIKIR-------DRFNTYKMFKSTLASLTLAKYLNA---HYEEAKKKNCV 146
            E  +   +   +          + N  +      A L     +      Y +AK+    
Sbjct: 201 AEVQEWLMERVAEFEGLPYVAGAKKNPTQAAGELGAMLRTRASVAEMVGRYADAKRVRGA 260

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LDF DL+     +  +  ++A +     Q    +L+DE QDTS  Q  +   L       
Sbjct: 261 LDFGDLVALAARVASEIPLAAEV---ERQRFKVVLLDEFQDTSHAQLVLFSRLFG----- 312

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    + AVGD  QSIY F GA   ++    R     A ++        L  ++R+
Sbjct: 313 -----GGHAVTAVGDPNQSIYGFRGASAGQLFHFVREFPALAGDSFAVAPTSYLTTAWRN 367

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             +IL+  + V S P +A  L           +      G+V++     S   ++     
Sbjct: 368 GRNILSAAN-VISAPLSAAALQAGP-------AGERQSAGSVEVPPLQPSPAAAEGKVVI 419

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
             + +  D           AR IA  +     TD     G  RV  A  + VL R+R   
Sbjct: 420 GRFATDEDE----------ARAIAADVLRYRLTDFEEPVGADRVAPA--MAVLCRRRAQM 467

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                  R       I         L D   I DL+A  R +       S + +L    +
Sbjct: 468 ----ECVRREFELRGIPYEIVGLGGLLDTPEIVDLVATLRVLADPGRSDSLMRLLAGARW 523

Query: 447 NFSEDDIFKICTQR------------------------------------------HETE 464
                D+                                                     
Sbjct: 524 RIGPADLMAFRDWSSFLARRRGNPRTDADEADDPDAAVIESDITDSPSLVEALDWLPREG 583

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-- 522
               + +  +   + +   +   + +L               +  A     +  +R G  
Sbjct: 584 WTSAHGRTLSPAALDRLHALSAELRQLRGF-MGDDLTTLLGEVERAMLLDIEVAARPGVS 642

Query: 523 -NEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPT----IKRAHSANHNEVRIMT 576
            ++    LD F +        +    +   ++ LE            A   NH  V+++T
Sbjct: 643 IHQARRNLDAFHDAAAGFLHTSHRVDVLAFLAWLEAAATEEGGLDVAAPEVNHEAVQLLT 702

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDDPGIPIWIPQSKSRNN 630
           VH +KGLE  VVF+    +  F      +          P   D   +P W      +  
Sbjct: 703 VHASKGLEWDVVFVPGLNAGAFPSSRDSRWSSGSAALPWPLRGDRADLPQWDTDQPDQKG 762

Query: 631 IVSD---LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
            +         ++   + E  RL YV  TRA   L +   +   +     + + +     
Sbjct: 763 WLDAEKNFKADVQAHGEAEERRLAYVAYTRAKFVLWVSSAAWVGSRAGMAEMSPFLSELA 822

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                   +   +    +          T    +     E  +       +  +    P 
Sbjct: 823 PLAGIGAGEAETVAAEGSTRGRTEAAAGTAAVVHAASVEESLVPAESPLTQDLELAHWPY 882

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                       + +  +      + +       R     + L            +    
Sbjct: 883 DPLEGPADPRTGARL--RLVPGRRAAMEAAAGRVR-----EALAAGPDTEPAADSDAGEG 935

Query: 808 -YCTKNAKLWPAKEYKNLLLS 827
               ++     AKE   LL  
Sbjct: 936 PRQLRSFAANWAKEADLLLER 956



 Score =  108 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 30/293 (10%), Positives = 67/293 (22%), Gaps = 19/293 (6%)

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            L       T    +        M   +    E +     T      +             
Sbjct: 885  LEGPADPRTGARLRLVPGRRAAMEAAAGRVREALAAGPDTEPAADSDAGEGPRQLRSFAA 944

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
               +  + + +    +   + +  P     +    L         +           +  
Sbjct: 945  NWAKEADLLLERRHRRATVQDVHLPGHISASTFVDLGDDPAAVLARLRRPVPREPGMSAR 1004

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            +G   H  ++                   +        +    L S+     N       
Sbjct: 1005 KGTAFHAWVE-------EHFGKAGMLELDEAPGSDSHIDEAYGLDSMVETFRNSEWAH-- 1055

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTH 900
                 +   V   +     ++++ GRID +         + ++KT          +    
Sbjct: 1056 ----RAPAHVEVPVETRIGEVVVRGRIDAVFRDADGGWDLVDWKTGRRPAAGQLKVK--- 1108

Query: 901  IAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
              QL++Y          P  S+     YV E +V         +   +I T  
Sbjct: 1109 AVQLAVYRLAWARLKGVPLDSVRAAFYYVGENQVVRPHDLGTAEQLEDIVTAA 1161


>gi|315636561|ref|ZP_07891797.1| UvrD/REP helicase [Arcobacter butzleri JV22]
 gi|315479210|gb|EFU69907.1| UvrD/REP helicase [Arcobacter butzleri JV22]
          Length = 911

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 137/898 (15%), Positives = 302/898 (33%), Gaps = 186/898 (20%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95
           +  +E     ILK+A  ++++  +       +  +  F T +    +  + +E  +    
Sbjct: 184 ATLIELQKENILKEAFKIKESILSCTNASNSAKNAVDFETFEDLFGRTWLEKENFEDYSY 243

Query: 96  LKE-KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFE 150
            K+   + ++ +F K+++  + Y   ++  +   + + +   + + K    K    L+F 
Sbjct: 244 FKKCANESNKSDFFKLKEELSIYYKIRAGFSLNKIFE-VYLKFRDFKFEFNKNKNYLEFN 302

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           D+     DLL  +    ++ +++D   +HILIDE QDTSL+Q++++  L ++   G    
Sbjct: 303 DISNLVYDLLSTKIDKDFLYFRLDSNYSHILIDEFQDTSLLQYKILEPLIDEILSGD--V 360

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
           +  +T F VGD KQSIY F G         KR       N  +   +  L  ++RS  ++
Sbjct: 361 TKFKTFFYVGDTKQSIYRFRGG--------KRELFDYVANTNKILEVEVLNTNYRSCENV 412

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +  V+++F    N +   ++S              G V++      + + +         
Sbjct: 413 INFVNELFLNLPNYEYFKQESVR----------ANGYVEVVVDTAFEEEEKFVN------ 456

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                             +A  I  ++ +           +   DI +L     D   + 
Sbjct: 457 ------------------VAKKIEELLQSG----------VNFNDIAILTYTNDDVLSLY 488

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
           +  +      KIS        L +   +K ++   ++I                     +
Sbjct: 489 YYLKQKFPSIKISTEMTS--KLINQQNVKAVINAIKYIYF-------------------K 527

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           ++I+K          +   +           Q VIK + + + I                
Sbjct: 528 EEIYKENLNAIIGNKLLTTLDLEIVLDEISVQEVIKELSKKLKII--------------- 572

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                           + + + +  +             ++  + +         ++   
Sbjct: 573 ---------------DENIIKLIEVSSSF--------NNIVDFVYEIDKLEAIMENSESK 609

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            ++I+T+  +KGLE   V L+D   +    K    +       +   I   I   ++ N 
Sbjct: 610 GLQILTIFKSKGLEFHTVILLDRIKRKNVDKSS--LLFDYENLELKNIFYKIKGYENFNE 667

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                I   KK + E+   +LYV MTRA + +II         KK     +  +  +   
Sbjct: 668 DYKKAIDKEKKLSLEDEINILYVAMTRAKNNMIIF--------KKEKSSVFDILNMNVCK 719

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
             + +    L  +I +   I+Y       +   + +E+ +K+     +            
Sbjct: 720 IGKIINSSNLVKNIEEKSIISYTPLNLGTQEKQIVKEKELKENHLHSRY----------- 768

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                                           GL  H  L+++     +  K  +    T
Sbjct: 769 -------------------------------FGLATHYCLEMLNNFSFNDLKYTLNLART 797

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EVSVSGKINCPKKDIIISGRID 869
           + +     K++ ++   +  L+ N      ++    + E S+  K             ID
Sbjct: 798 RFSNYLSVKDFIDIENRLAHLINNDFFKFLITNSVLTSEQSLIYKEELK--------IID 849

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            +       +I +YKT        E +   H  Q+  Y++ +K+ +   ++   L+Y+
Sbjct: 850 LLIYKDDTYYILDYKT------TKEELDEEHKNQVLYYKEAIKEIFKTSNVKSYLVYL 901


>gi|296137089|ref|YP_003644331.1| exodeoxyribonuclease V, beta subunit [Thiomonas intermedia K12]
 gi|295797211|gb|ADG32001.1| exodeoxyribonuclease V, beta subunit [Thiomonas intermedia K12]
          Length = 1202

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 133/988 (13%), Positives = 284/988 (28%), Gaps = 156/988 (15%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMET-------GNPTILKKAQTL 53
            L  R G    ++     K  W      +      +  S          G  ++      L
Sbjct: 228  LWQRLG-EPQQAQVRTLKAQWAERVASMRQWLCALVQSEVNPLSKNKYGLKSVCGWFDAL 286

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            Q        +++  L    +        +    Q    + P +  +++  +     + D 
Sbjct: 287  QAWLD-DPAQQQPGLDDKAWAKLTPDGLRAGCNQGKQVEPPAVFNEVEMLRAALADLADL 345

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                + +         A  ++A     K  +    F D +   +  L        +R +I
Sbjct: 346  VPELQTY--------AAAQVDARLRVLKAASGQFSFHDQLERLDAALAGPQ-GERLRARI 396

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             ++    LIDE QDTS +Q+ V   L           ++   +  +GD KQSIY+F GA+
Sbjct: 397  LEQYPVALIDEFQDTSALQFSVFDRLY----SITTAQTTHSAVLLIGDPKQSIYAFRGAD 452

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-ST 292
                LR ++  Q R +          L  ++RSTA+++  V+++F   E + G       
Sbjct: 453  IASYLRARQATQGRHSA---------LQTNYRSTAEVVHSVNQLFERREQSAGAGAFLYR 503

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                  +        V    +      S+      +   +     +  +    A   A  
Sbjct: 504  DDEAPDADNPVPFIAVGARGRAEQLICSEGPVHALTCAVHQALESKRDARERFAAHSAAR 563

Query: 353  ISNMIGT---DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            I +++         ++G    ++  DI VLVR   +   +    R L+     SV  +DR
Sbjct: 564  IVSLLNDTQVGFRQADGGFARLRQSDIAVLVRDGDEARAMR---RALQRRGVASVYLSDR 620

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              +       DL+   R +    D         +P    +  ++  + T         + 
Sbjct: 621  DSVFASPEAADLLRWLRAVAEPRDGRLARAAFAAPTLGATIAELAALATD--------DD 672

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            +       +++ Q +      L  + Q     D     L  + G ++  +         L
Sbjct: 673  VFDNRLALLAELQAIWLRQGVLPMLRQTLHRLDLPARWLSEEDGERRLTNVL------HL 726

Query: 530  DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             E L           + ++ L  ++  Q          +  + VR++T+H +KGLE P+V
Sbjct: 727  AELLQTASGALDGEQALIRWLQEQMAGQSTEEQVVRLESEADLVRVVTIHKSKGLEYPLV 786

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            FL                                                  +    E  
Sbjct: 787  FLPFA-----------------------------------TAFKEAKDGADDRERLREDL 811

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKK---SNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            RLLYV +TRA   L +   +    +      ++     ++      +       L  +  
Sbjct: 812  RLLYVALTRARHALWVGIAALKVGKGSVCMLHRSAIGYLLGGDTPCEGAAIPGLLRETFG 871

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL--------FSPIKNDINEPYIL 757
                +    +    E   L+     + L++      +         FS +  D+      
Sbjct: 872  DSPAVQIVDAAQEAELQRLQAAHPAQALIEPPNYHAQFERNWSIGSFSALVRDLTPRSTQ 931

Query: 758  NPS-----------------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT----- 795
             P+                            +     +    G  +H+ L  +       
Sbjct: 932  QPALQAALQDELWATEPSMEQPSPATLQPSAARHRFPRGALVGKFVHEQLAWLGENGFAL 991

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-CDSYSEVSVSGK 854
              +  + N +     +      + +    L  +      P+           +E+     
Sbjct: 992  SAQQTQDNLLQRCARQGWDAPRSADLLEWLSEVLATPLPPLGAALPEIDTLLAEMEFWLP 1051

Query: 855  INCPKK-------------------------DIIISGRIDQISISQQNIFIFEYKTHHHV 889
            ++  +                            ++ G  D +       ++ +YK++   
Sbjct: 1052 VDRARAAEIDALCQQHILPGRARPELTERTLHGMVMGFADLVFHHAGRYWVLDYKSNVLG 1111

Query: 890  PQEIEHIPY---------THIAQLSIYE 908
              + ++             +  Q ++Y 
Sbjct: 1112 TDDADYTQQVLEAAVLEHRYDVQCALYM 1139


>gi|168217833|ref|ZP_02643458.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           NCTC 8239]
 gi|182380099|gb|EDT77578.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           NCTC 8239]
          Length = 664

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 99/556 (17%), Positives = 177/556 (31%), Gaps = 117/556 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +       YE  K +  +LDF+DL I    LLK+      I       I +IL+DE Q
Sbjct: 149 YDIFNKCYEAYETFKNERGLLDFDDLQIKAVTLLKENPH---ILGYYRNLIKYILVDEFQ 205

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D   +Q E +R +                +F VGDE QSIYSF GA PK ++  +   + 
Sbjct: 206 DCDEVQLEFLRFI-------------NNEVFCVGDEDQSIYSFRGATPKCMINFEENFE- 251

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RS  +I+ V   V    +        +              G
Sbjct: 252 -------GSEKVYLKYNYRSLKNIVEVSKDVIKHNKERYQKEIIAFN---------ENQG 295

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++L +      +                          A  IA  I             
Sbjct: 296 KIELKKPFNESEE--------------------------ANIIALKIEESKRLGN----- 324

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALG 425
                +  D  +L R   ++              KI     D+     +H   +DL+A  
Sbjct: 325 -----KYSDTAILYRTNMESRSFIDAF----IRKKIPFKLLDKEYNFFNHFICRDLIAYL 375

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  +   +   F  ++  P    S+  I+ +   +   E V++ +         + +   
Sbjct: 376 RLSIDPFNKEDFNKIINKPFRYVSKSAIYGVMNSKKR-ENVFDILMNVEGVHPFQMRKF- 433

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--S 543
           + +   I      S +     IL   +   Q+I  + ++     ++ L+     + +   
Sbjct: 434 EELKSDIAYLNKLSLNSAIDFILSDLEY-SQYIREYSSKFKQNQEDLLDIVEEFKSSAME 492

Query: 544 YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + S+   +S +E             N + V + T+H  KG++   V +V+   +   HK+
Sbjct: 493 FKSIITFLSHIESVEENLENLNSKGNIDSVILSTMHGVKGMQFNDVHIVNIVDETIPHKN 552

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YVG+TRA + L
Sbjct: 553 S-------------------------------------MENLEEERRLFYVGITRAINNL 575

Query: 663 IICKHSNTSNEKKSNQ 678
            +    +   + K   
Sbjct: 576 YLYAPKSVRGKFKDPS 591


>gi|153002977|ref|YP_001377302.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152026550|gb|ABS24318.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 779

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 108/765 (14%), Positives = 214/765 (27%), Gaps = 137/765 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  ++++    +   +V   +             +  + + L     ++   + 
Sbjct: 31  GAGSGKTRVIVHRIARLVRDERVMPWHVLAVTFTNKAAGEMKDRLEALLGTQASELWVQT 90

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD----EFIKIRDRFNTYKMFK 121
           F    + FL ++        +  I      ++   +  Q+    +   +  R    ++ +
Sbjct: 91  FHAFGARFLRREAARAGLPPSFAIYDDDDQIRVVKRIFQELRVEDGEPLTARQALSRIDR 150

Query: 122 STLASLT--------------LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
              A+L               LA+ +   +E A  +   +DF DL++    LL++    A
Sbjct: 151 WKNAALRPAEVVVGEYDVEGQLAREVYGRFEAALARAGAVDFGDLLLRPVRLLEED---A 207

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +R        ++L+DE QDT+  Q+ +++ L  +           R +  VGD+ Q+IY
Sbjct: 208 TVRRAWAGRFRYLLVDEFQDTNAAQYRLLKLLANE----------KRNVCVVGDDDQAIY 257

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            + GA+   +L   +              +++L  ++RST  +L     V S     +  
Sbjct: 258 RWRGADVTNILEFDQGFP--------GARVVKLEQNYRSTRTVLDAAHAVISKARRRREK 309

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              + +            G  +    VV Q +     +     +   +            
Sbjct: 310 RLWTES------------GAGETLALVVGQDEHDEAERVARAVAAERARGTAGEE----- 352

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
                                       I VL R    +  +    R      +I  V  
Sbjct: 353 ----------------------------IAVLYRTNAQSRPLEAALRA----ARIPYVIV 380

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETV 466
                 D   ++D  A  R  LS   DL    +L  P     E  + ++          +
Sbjct: 381 RGTSFYDRAEVRDAAAYLRLALSPRSDLDLERVLNRPARGVGEKTLERLRAHASARGIAL 440

Query: 467 YEYIQKFA------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           ++ I +                     +  L                L       +  + 
Sbjct: 441 FDAIAERDAVEDLKPAARRALGEFHALVAGLAADVPALDAGIAVQEALKRSGLLARLEAE 500

Query: 521 FGN---EVIDVLDEFLNFTLRNEQN----------SYSSLQELISELEQYPPTIKRAHSA 567
             +   E  + L E +      +++                 L   LEQ     +     
Sbjct: 501 HTDEAVERAENLAELVAAAREFDESLLGEPPPRDPEEVRPPPLARFLEQIALLGEADAET 560

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               V +MT+H AKGLE   VFL         ++                          
Sbjct: 561 PEGRVSLMTLHAAKGLEFEAVFLAGLEDGTLPYERPWSDAGPAEREAAEDEERR------ 614

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                                 L YVGMTRA  +L +               ++  M   
Sbjct: 615 ----------------------LCYVGMTRAKKRLTLSLARRRIG-YGEGGPSYRSMEPS 651

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
            F  D   +   L   +              P + P E    +++
Sbjct: 652 RFLADLPPELFGLAPRLASAPAARGPVIRRPPGSLPGEPHIELEE 696


>gi|302407938|ref|XP_003001804.1| ATP-dependent DNA helicase srs2 [Verticillium albo-atrum VaMs.102]
 gi|261359525|gb|EEY21953.1| ATP-dependent DNA helicase srs2 [Verticillium albo-atrum VaMs.102]
          Length = 999

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 110/713 (15%), Positives = 209/713 (29%), Gaps = 174/713 (24%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y++  +++ +LD++DL+    +LL+K              +  +LIDE QDT+ IQ+
Sbjct: 183 FRAYQDHLERSNLLDYDDLLTKCVELLRKHPSCV-------SNVQAVLIDEYQDTNGIQY 235

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E++R   +          +   +  VGD  QSIY +  AE K + R  +   +       
Sbjct: 236 ELMRLFAQ----------ARDRITIVGDPDQSIYGWRSAEIKNLYRLLKDFPQTDE---- 281

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I L  ++RS+  IL V  KV    +               R               
Sbjct: 282 ----ISLEENYRSSQAILDVSLKVIQQDKKRYQKLLLPVHNKGTRPV------------- 324

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 L +  +A+  A  +   I   I           +++  
Sbjct: 325 ----------------------LRRLKTAANEAEWLVSEIRRAI-------LMSGKMMNE 355

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            D+ +L+R    +  I            I           + + +K L+   R I   E+
Sbjct: 356 DDVAILLRSAALSRHIESAL----GKCGIPYRMVGGKKFYERIEVKILIDYLRVIHQPEN 411

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----------- 482
           + S   ++  P     +  I  +  +    +     +      G  K Q           
Sbjct: 412 NDSLARIINVPRRGIGDVTIKSLVEEAETAKMDVWTLLTKHCRGDRKAQTNIKKAMEQKI 471

Query: 483 --HVIKYIHELIHIAQFCS-------PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
              +I+ +  +    +            D    +L     ++     +  E       ++
Sbjct: 472 SGELIRMVMSVRKKVEEPPSGSPCYHLVDLIGDLLSQLNFQKYLQDMYPEEHEARWANVE 531

Query: 531 EFLNFTLRNEQNSYSSLQE-----------------LISELEQYPPTIKRAHSANHNE-- 571
           EF+N      +   +++++                 L   L               N+  
Sbjct: 532 EFINLAGDFMRELSATVEDDKLPTIDGVQQVEEKDALGRFLANVALASDSQKGETENKPM 591

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V I T+H AKGLE PVVF+    +    H                               
Sbjct: 592 VTISTIHAAKGLEWPVVFVPAVYNGSIPH------------------------------- 620

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                   +    +E  RLLYV MTRA   L +     +S                +   
Sbjct: 621 -------ARAEDLDEERRLLYVAMTRAQSLLYLSCPLYSS---------------QAGGM 658

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
               +K +L+  +  +   ++           ++    I    D     +++F+ +    
Sbjct: 659 GGGGEKAELSTFLPTEIHQSFARRGPSFSTEVIQEVGRILGRADSVPSAERIFAQMPLLE 718

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
                L P+  +        +  +D   F R    H+  Q     P      +
Sbjct: 719 RLEDTLYPADPEESN----PAGRADKSGFKR----HRGPQANGDTPAEAYPQW 763


>gi|229845144|ref|ZP_04465279.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 6P18H1]
 gi|229811980|gb|EEP47674.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 6P18H1]
          Length = 1202

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 132/902 (14%), Positives = 279/902 (30%), Gaps = 133/902 (14%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
              +  +     SP +     + ++    +       ++           + L     + K
Sbjct: 313  SALGEKCEEGASPFIAPIFTELEERANALISPDLLRRII-----LYHYRQSLQQKLLDYK 367

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
              +    F+DL+    + L+       +   I  +    +IDE QDT   Q+ +   +  
Sbjct: 368  LNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAMIDEFQDTDSQQYAIFSKIYR 426

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            D                +GD KQ+IY F GA+    L+     Q R            L 
Sbjct: 427  D------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSRFE----------LT 470

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             ++RS   ++  V+ +F  P++         T +  R             + +    + +
Sbjct: 471  KNYRSEKHLVDGVNALFDFPQSPFIYQNIKFTAVDSR------------DDHLRFYLNGK 518

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-SNGKKRVIQAKDILVLV 380
              P    + +  D + +   A I A  I Y + + +    +F +    + +QA +I VLV
Sbjct: 519  AEPAYRFYLTESDKVNKTEMAKICAVSIQYWLKSAVENQAVFQNEDTYKTLQAANIAVLV 578

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R + +  L+    + L      SV  +D+  + D    K+L  + +  L+   +   +  
Sbjct: 579  RDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKELAWVLKACLNVA-ERPILNA 634

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            + + LF  +  DI +I           E   +      +++Q   +    L+ + Q    
Sbjct: 635  IATALFGLNAADIHQIQQN--------EADWQRWADSFAQYQQTWQRQGILVMLHQILLE 686

Query: 501  HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPP 559
                  +L    G +             L E L       ++  + L     +++ +   
Sbjct: 687  QGISERLLSQATGERDLTDFL------HLAEILQQAATLHESEAALLSWFEKQIQGEGRQ 740

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              +    +    V+I+++H +KGLE  +V+L               +        D  + 
Sbjct: 741  EAQIRLESERQLVKIVSIHKSKGLEYDLVWLPFLA-----------VPSKIPTAGDMNVY 789

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL----------------I 663
                + ++  +I +  +  L + T  E  RLLYV +TRA  Q+                 
Sbjct: 790  YSKERDETLWDIENRNLNALCEETFAEELRLLYVALTRAKYQMAFALPAQFDKKWNALHY 849

Query: 664  ICKHSNTSNEKKSNQRTWYDMVY-------------DSFHNDERVKKIKLTNSINKDEWI 710
            +        E   +     + +               +  N E    + +    ++ +  
Sbjct: 850  VLSQGEIGKEIALSAPKDTETLLQTFKEKMRDNVEICTKPNLEDFPALSINTKNDELKAA 909

Query: 711  AYEWS-THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
             +  +       T     E   +  +           + +D  +    N   I T     
Sbjct: 910  EFTGNIEQDWRITSFTSIEQGHRRQNYFTESAGKKHAVFDDAKDYDSQNSIEISTALLNE 969

Query: 770  LESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
             ES  L   +    G  +H+  +  +       +       +       A+  +N L  I
Sbjct: 970  SESSILDLPRGKQVGTALHRHFENCYFSDLANTEEIDKLRQSLQLDETFAEPLQNWLQQI 1029

Query: 829  TRL-LENP---MMTTAMSCDSYSEVSV------------------------SGKINCPKK 860
            +   L N     +    + D   E+                          S  +   + 
Sbjct: 1030 SHTSLSNEIGIALADLANKDCIKEMPFYLAIREHFDVEAFNQALKAHHHLPSKPLQFEQI 1089

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKIL 911
              ++ G ID +       ++ +YK++              + E +   +  Q  IY   L
Sbjct: 1090 QGMVRGSIDLVFRHNGKYYLVDYKSNFLGSTLADYNQEALKKEMLHSHYDWQYLIYTLAL 1149

Query: 912  KD 913
              
Sbjct: 1150 HR 1151


>gi|145634939|ref|ZP_01790646.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittAA]
 gi|145267805|gb|EDK07802.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittAA]
          Length = 1202

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 132/902 (14%), Positives = 279/902 (30%), Gaps = 133/902 (14%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
              +  +     SP +     + ++    +       ++           + L     + K
Sbjct: 313  SALGEKCEEGASPFIAPIFTELEERANALISPDLLRRII-----LYHYRQSLQQKLLDYK 367

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
              +    F+DL+    + L+       +   I  +    +IDE QDT   Q+ +   +  
Sbjct: 368  LNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAMIDEFQDTDSQQYAIFSKIYR 426

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            D                +GD KQ+IY F GA+    L+     Q R            L 
Sbjct: 427  D------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSRFE----------LT 470

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             ++RS   ++  V+ +F  P++         T +  R             + +    + +
Sbjct: 471  KNYRSEKHLVDGVNALFDFPQSPFIYQNIKFTAVDSR------------DDHLRFYLNGK 518

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-SNGKKRVIQAKDILVLV 380
              P    + +  D + +   A I A  I Y + + +    +F +    + +QA +I VLV
Sbjct: 519  AEPAYRFYLTESDKVNKTEMAKICAVSIQYWLKSAVENQAVFQNEDTYKTLQAANIAVLV 578

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R + +  L+    + L      SV  +D+  + D    K+L  + +  L+   +   +  
Sbjct: 579  RDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKELAWVLKACLNVA-ERPILNA 634

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            + + LF  +  DI +I           E   +      +++Q   +    L+ + Q    
Sbjct: 635  IATALFGLNAADIHQIQQN--------EADWQRWADSFAQYQQTWQRQGILVMLHQILLE 686

Query: 501  HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPP 559
                  +L    G +             L E L       ++  + L     +++ +   
Sbjct: 687  QGISERLLSQATGERDLTDFL------HLAEILQQAATLHESEAALLSWFEKQIQGEGRQ 740

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              +    +    V+I+++H +KGLE  +V+L               +        D  + 
Sbjct: 741  EAQIRLESERQLVKIVSIHKSKGLEYDLVWLPFLA-----------VPSKIPTAGDMNVY 789

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL----------------I 663
                + ++  +I +  +  L + T  E  RLLYV +TRA  Q+                 
Sbjct: 790  YSKERDETLWDIENRNLNALCEETFAEELRLLYVALTRAKYQMAFALPAQFDKKWNALHY 849

Query: 664  ICKHSNTSNEKKSNQRTWYDMVY-------------DSFHNDERVKKIKLTNSINKDEWI 710
            +        E   +     + +               +  N E    + +    ++ +  
Sbjct: 850  VLSQGEIGKEIALSAPKDTETLLQTFKEKMRDNVEICTKPNLEDFPALSINTKNDELKAA 909

Query: 711  AYEWS-THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
             +  +       T     E   +  +           + +D  +    N   I T     
Sbjct: 910  EFTGNIEQDWRITSFTSIEQGHRRQNYFTESAGKKHAVFDDAKDYDSQNSIEISTALLNE 969

Query: 770  LESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
             ES  L   +    G  +H+  +  +       +       +       A+  +N L  I
Sbjct: 970  SESSILDLPRGKQVGTALHRHFENCYFSDLANTEEIDKLRQSLQLDETFAEPLQNWLQQI 1029

Query: 829  TRL-LENP---MMTTAMSCDSYSEVSV------------------------SGKINCPKK 860
            +   L N     +    + D   E+                          S  +   + 
Sbjct: 1030 SHTSLSNEIGIALADLANKDCIKEMPFYLAIREHFDVEAFNRALKAHHHLPSKPLQFEQI 1089

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKIL 911
              ++ G ID +       ++ +YK++              + E +   +  Q  IY   L
Sbjct: 1090 QGMVRGSIDLVFRHNGKYYLVDYKSNFLGSTLADYNQEALKKEMLHSHYDWQYLIYTLAL 1149

Query: 912  KD 913
              
Sbjct: 1150 HR 1151


>gi|217967135|ref|YP_002352641.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724]
 gi|217336234|gb|ACK42027.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724]
          Length = 655

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 96/553 (17%), Positives = 185/553 (33%), Gaps = 122/553 (22%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + + + L   Y+E K++  VLD++DL+     LL + + +  +         +IL+DE Q
Sbjct: 189 IEIIQKLFERYKERKRELNVLDYDDLLFFWYRLLLEDEKTRKVLN---DRFLYILVDEYQ 245

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q E+I+ +              + +  VGD+ QSIYSF GA  + +L    +   
Sbjct: 246 DTNWLQGEIIKLM----------REENKNILVVGDDAQSIYSFRGATIENILSFPEVF-- 293

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     I  L  ++RST +I+ + +++                             
Sbjct: 294 ------SGTRIFYLVFNYRSTPEIINLANEIIKRNTRQYFK------------------- 328

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             ++   + S    +    ++                  A+ +   I  +          
Sbjct: 329 --EIKPVLKSGSKPKLVWVRD--------------EEEEAQFVVEVIKELHREG------ 366

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               I+ KDI VL R    +  +            I           +   IKD+++L +
Sbjct: 367 ----IKYKDIGVLFRSNYHSMAVQMEL----TIQGIPYEVRGGLRFFEQAHIKDMLSLLK 418

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            I + +D++S     K            K+     E+    ++ + F      +    I+
Sbjct: 419 IIFNPQDEISAQRFFK-LFPGIGRSYAKKLSQVLKESN---DFERIFQLPFSGRTLEGIR 474

Query: 487 YIHELIHIAQFCSPHDFFTLI-LGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQN 542
            +  L    +      F  ++ +   +  + ++ R      +    +D+ + F+ R +  
Sbjct: 475 ILKVLWDKIKPIPIQRFSEILRIFFHEYYKDYLERTYPDFKDREKDVDQLILFSERYD-- 532

Query: 543 SYSSLQELISELEQ--YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               L++ +SEL    Y            + V + TVH AKGLE   VF++      F  
Sbjct: 533 ---DLEKFLSELTLYTYAGEKLIEEGEEKDFVVLSTVHQAKGLEWHAVFILRLVQGEFPS 589

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                +      EE  RL YV +TRA  
Sbjct: 590 -------------------------------------YKSMENIEEERRLFYVAVTRAKK 612

Query: 661 QLIICKHSNTSNE 673
           +L +  H     +
Sbjct: 613 ELYVITHLTKRVK 625


>gi|285016846|ref|YP_003374557.1| exodeoxyribonuclease V subunit beta [Xanthomonas albilineans GPE
            PC73]
 gi|283472064|emb|CBA14571.1| probable exodeoxyribonuclease v beta chain protein [Xanthomonas
            albilineans]
          Length = 1221

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 133/921 (14%), Positives = 254/921 (27%), Gaps = 102/921 (11%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            Q        +       S               ++   + P  +  L  + D + +   +
Sbjct: 278  QLWQGRADAQWTLDAPGSHLDKLLPARLSTFCREDARDRVP--RSPLFDAFDAWQQADAQ 335

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
               ++  +      TL +   A     K++  V  ++D I      L+     A +R  +
Sbjct: 336  VRQWQTERRIRFLHTLREAAIARIAAIKRQRRVQTYDDFIDAVAQALRGPHAEALVRG-L 394

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
              +    L+DE QDT   QW +  +L     + +        LF +GD KQ+IY F G +
Sbjct: 395  RAQYAVALVDEFQDTDERQWAIFSTLFGTSDLVR-AIGVEPGLFLIGDPKQAIYGFRGGD 453

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDS 291
                L      ++             L  +FRS   +L  +D +++      A  +    
Sbjct: 454  VHTYLSAVTNAEQAPP----------LDHNFRSRPALLAAIDALYAQAGYTQAFFIDGID 503

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
               ++    R                     +P   +           +     A  +A 
Sbjct: 504  FHPVQPGGRRADSDLQRDDRCAPALTLWRAPDPPLPAKGKPRPWSAGRARELCTAACVAA 563

Query: 352  TISNMIGTDTI-FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I + +G      +    R +Q  DI VLVR   D   I      +     I  V   + 
Sbjct: 564  -IGDWLGAGRAGTALVDGRAVQPADIAVLVRSHSDATRIQQALAAV----GIPAVAAGKP 618

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             L       +LMAL   +L   DD      L + L       I  +              
Sbjct: 619  SLFASEEALELMALLHSLLDPGDDSRLRAALATVLIGEDAAAIAALDHD----------- 667

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV-- 528
                     + +   +   +     Q   P       LG+   ++      G   +    
Sbjct: 668  -------GERHRRWQQQALDWRERWQRGGPLALIEH-LGSTNAQRLLALVDGERRLSNYL 719

Query: 529  -LDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             L E L     +    +  +  L   +        T      ++   V+I+T+H +KGLE
Sbjct: 720  QLAELLQEAHTHALGPHGLVDWLARRIAASNANDDTQLLRLESDARRVQIITLHKSKGLE 779

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             P+VFL   G             ++       G                   +  + + +
Sbjct: 780  YPLVFLPYVGIGQKPLTQKPGERVIVHR---QGKRCLHWPLHVDAVEWEASKRAWEHAQR 836

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             E  RLLYVG+TRA   L I       ++  +      D+          +         
Sbjct: 837  AEDARLLYVGLTRAEHALWIATGPFFRHDTTALAPMLSDIDALQSRISAEILMFDTRPPP 896

Query: 705  NKDEWIAYEWSTHHPENTPLER--EETIKQLMDEQKIPKKLFSPIKNDINEPY--ILNPS 760
            +       E     P  TP  +   E       +         P+ +           P+
Sbjct: 897  HPPRLPPAEALHVPPARTPTRKLVAEWWVYSFTQLANADAGTDPMASTTVASRGGRDEPT 956

Query: 761  TIDTKGKTNLESLLSDNQ-TFNRGLIIHKLLQVIFTLPEHKRK----------NFITSYC 809
              DT        ++         G+ +H++ +          +          N I    
Sbjct: 957  AADTVNAAAEVEIIDRRFVGNRFGVAMHEVFERCDFAAWRDWRPGQPAPVGQHNAIVEAL 1016

Query: 810  TKNAKLWPA-----KEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVS---------- 852
             +                +L+     +   E+  +         +E+             
Sbjct: 1017 QRGGYAEDELTDGSALLTSLVGHTLTVPLPESICLAVLPQTQRRNEMEFHFAMRPTRVDA 1076

Query: 853  -----GKINCPKKDI----------IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                  +     +            +++G ID         ++ +YK++     + + + 
Sbjct: 1077 LLTLLHRFGVAGERQAFGARQRLEGLMTGLIDLTYHHAGRWYVLDYKSNRLPSYDPDALA 1136

Query: 898  -----YTHIAQLSIYEKILKD 913
                   +  Q  IY   L  
Sbjct: 1137 TAMAHSEYTLQALIYTVALHR 1157


>gi|294624884|ref|ZP_06703540.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
 gi|292600803|gb|EFF44884.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
          Length = 1179

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 132/977 (13%), Positives = 263/977 (26%), Gaps = 107/977 (10%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L     ++ N   +   +       F  + ++      +   +      A          
Sbjct: 95   LLQAVHVAANALADAFQR---HGTAFFDAIMSAIEGGILSKVSYKPEWLASLWHWFEHFA 151

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                  +   +  L            ++   ++P     +    D ++    R   +   
Sbjct: 152  AAPSSNTAPHAKLLKLTAAELAAGTNKKFVDRTP--ASPMSHEIDGYLTALARVEAWCSR 209

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +       L     A     K++  V  ++DL+      L+     A +  ++  +    
Sbjct: 210  RRVALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGAQADALV-KRLRTQYAIA 268

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QDT   QW +  ++  +  + +        LF +GD KQ+IY F G + +  L  
Sbjct: 269  LVDEFQDTDDRQWSIFSNVFGEGPLAQAA-GLEPALFLIGDPKQAIYGFRGGDVRTYL-- 325

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                      A        L  +FRS   +L  +D +++    A     D       R+ 
Sbjct: 326  --------AAAVTAELAPPLSHNFRSRPGVLAAIDALYAQAGYADAFLTDGIAFHPVRAG 377

Query: 301  RIGQVGTVQLWEQVVSQHD-SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                   +Q            +                   +  +        I   +  
Sbjct: 378  TKRVDEDLQRDGVTAPALTLWRAPEPPPPAKGKPKPWSAGRARELATAACVAAIRGWLAG 437

Query: 360  DTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                +     R +QA DI VLVR   +   I      +     I  V   +  L      
Sbjct: 438  GRDGTATVCGRPVQAGDIAVLVRSHGEATRIQQALGAV----GIPAVAAGKQSLFATEEA 493

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             +L+AL + +L   DD      L + L       I  +          +   Q+ A    
Sbjct: 494  LELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAAL----ERDGERHRRWQQQALDWR 549

Query: 479  SKFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
             ++Q    +  I EL               +L    G ++  +         L E L   
Sbjct: 550  ERWQRGGPLALIGELGATHG--------QRLLALVDGERRLTNYLQ------LAELLQEA 595

Query: 537  LRNE---QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                         L   I+  +      +    ++   V+I+T+H +KGLE P+VFL   
Sbjct: 596  DARALGPHGLVDWLSRRIANADDNDEAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYI 655

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            G         +   +               +++  +   S      K+  + E  RLLYV
Sbjct: 656  GIGRSDKGAGRHCVVHAPELGRQLHW----KTERDDPSWSAAEAAWKQEQRAEDARLLYV 711

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            G+TRA   L I       +E+ +       +        E    +  +        +   
Sbjct: 712  GLTRAEHALWIASGPFHQHERTALSAMLRALDALQGAAGEGTVVVDTSTPPAHLPRLPAP 771

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS----------TID 763
                 P     +R    +  +          +    D      +  S           + 
Sbjct: 772  SEAQVPLARNPQRHIAPEWWVYSFTQLASADAGAATDPMASATVVGSGGSDEPSGSEAVA 831

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP--------EHKRKNFITSYCTKNAKL 815
                T+ E           G+++H + +                                
Sbjct: 832  VAVATDAEPFDPRFAGNRFGVVMHDVFERCDFAAWQAWRPGQPAPDGQAAPILEALQRGG 891

Query: 816  WPAKEYKNLLLSITRLLEN---------PMMTTAMSCDSYSEVSVS-------------- 852
            +   +  + L  +T L+ +           +         +E+                 
Sbjct: 892  YAKDDLDDGLRMLTALIGHTLTVALPEGTRLADVPEPQRRNEMEFHFAMRPTRVDALLAL 951

Query: 853  -GKINCPKKDI----------IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---- 897
              +                  +++G ID         ++ +YK++         +     
Sbjct: 952  LHRFGVVGDRQAFGARQRLEGLMTGLIDLTYSVDGRWYVLDYKSNRLPSYAAAALARAMA 1011

Query: 898  -YTHIAQLSIYEKILKD 913
               +  Q  IY   L  
Sbjct: 1012 HSEYELQALIYTVALHR 1028


>gi|218781303|ref|YP_002432621.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
 gi|218762687|gb|ACL05153.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
          Length = 1156

 Score =  227 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 107/683 (15%), Positives = 200/683 (29%), Gaps = 126/683 (18%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
             +   +  L     +     ++++           A  L+        +   +   +F L
Sbjct: 530  TLTHRIARLVEKSGAAPESILAITFTNQAAR--AMAHRLEDMLDENGGKVFVATFHAFCL 587

Query: 75   TQK--------------FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
            T                    +    ++  K+S   K K + +       + +  +    
Sbjct: 588  TLLRELAEAEGRAISVLGEKDRLFYIKKALKESGIKKIKPELASLHISLAKQQMASPSSA 647

Query: 121  KST--LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            + T         +   A Y+       +LDF+DL+      +   +  +  R  + +   
Sbjct: 648  EFTDLENKAGAMQEAYAAYQTMISGLGLLDFDDLMYKAVRAI---EADSLYRESLQKRFP 704

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H+ +DE QD + +Q+ ++R L                L  +GD  Q+IY F G++     
Sbjct: 705  HVCVDEFQDVNHVQYRLLRQLC----------PPEADLTVIGDPDQAIYGFRGSDVGFFN 754

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            R      +          +IEL  ++RST  +L V  +V   P    GL           
Sbjct: 755  RFGEDYPQ--------ARVIELSTNYRSTETVLKVAGQVMGDPGQDFGL----------- 795

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                G VG  Q+         ++         S    +   S                + 
Sbjct: 796  --HSGIVGADQIMIIDTPTSAAESEAIVHIMESMVGGVSHFS----------------LD 837

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +     +         D  VL R R   P +T       +   I     D+  L DH  +
Sbjct: 838  SGRTDMDAGSEDWSFGDFAVLFRTRIQLPPLTEAL----DRSGIPYQVVDKKRLVDHPGV 893

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQ------ 471
            ++L++  R I     DL  + ++  P     +  I  +      + +++ E ++      
Sbjct: 894  EELLSYIRLINQTGTDLDLLRIMNFPKRGIGDKTIETLRTWGESQGKSLIEALEVARRLP 953

Query: 472  --KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDV 528
                +N    K   V K I E           +    ++        +     G      
Sbjct: 954  LPGLSNSQQIKLHSVWKTITEARKKILDLPLPEALEHLMYTIPLEPLYTRSGNGRTASAC 1013

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            +   L+     +      L      +            A  + V +MT+H AKGLE   V
Sbjct: 1014 I---LDMAQDFDG----DLGRFCDMVNLASDADTLEPEA--DRVSLMTMHAAKGLEFRGV 1064

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            F+      +                                       +  K+S  EE  
Sbjct: 1065 FVTGCEDGLIP-----------------------------------YFREGKESDPEEEL 1089

Query: 649  RLLYVGMTRASDQLIICKHSNTS 671
            RL YV +TRA  +L +       
Sbjct: 1090 RLFYVALTRAQRRLWLTYAKRRR 1112


>gi|227486915|ref|ZP_03917231.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092989|gb|EEI28301.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 1228

 Score =  227 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 135/1062 (12%), Positives = 272/1062 (25%), Gaps = 240/1062 (22%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            + + D++    ++      +         F +T  +  +   L   + +  K N +  F 
Sbjct: 182  RTAEDVRGATAEALRVIDNVERATKDTTKFIATQDTRVVLLKLVDTFNQYLKDNRLTTFS 241

Query: 151  DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
              +     L         +          +++DE QDTS  Q   +RSL         T 
Sbjct: 242  HTMAAAARLASGEPS---VGSSERHRYRVVMLDEYQDTSHSQRIFLRSLY-------GTG 291

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG-----QKFSIIELPLSFR 265
                 + AVGD  Q+IY + GA    +                    Q    +E+  SFR
Sbjct: 292  EPGLAVTAVGDPMQAIYGWRGANSSNLANFVTDFPHTVEKNPDGTPVQPAKKLEMTTSFR 351

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            +   +L V + +      A G       ++     R G  G  ++        + + +  
Sbjct: 352  NPGAVLGVANHISGAILEATGEYAPEERSVAELEPRAGA-GDGEVLLANFELEEEEADFV 410

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                 + +  +  +     +A         +  +         +  +A    +LVR+   
Sbjct: 411  ARQLAAEYHGVSDDQLDEYVA--------TLADSAQPTRATNAQPFEA---AILVRQHSQ 459

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
             P            YK+    +    L     I DL+++ + +   ED  + + +L  PL
Sbjct: 460  VPEAVKALE----KYKVPYHVHSLAGLLMMPEIVDLVSIAKALARPEDSSALLRILTGPL 515

Query: 446  FNFSEDDIFKI-------------------------CTQRHETETVYEYIQKFANCGISK 480
                  D+  +                                 T  +           +
Sbjct: 516  VKLGFADVKALTNRARTLNSYQRDKATAETTTEDAVNAADKSGATESDADNPALVRLKKE 575

Query: 481  FQHVIK--------------------------------YIHELIHIAQFCSPHDFFTLIL 508
             +  +                                     L   +      D F  I 
Sbjct: 576  IEDALAEDTVFLGDALADLGDASQYTEEGYARLTSLASRFRWLRGHSLASGLQDIFQDIE 635

Query: 509  GAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
                 R + ++R      G      LD F  +         ++L+  +  L+        
Sbjct: 636  NTFGIRTEVLARENPRQLGVPGTSHLDTFHGYVADFASIDGATLRGFLEYLDAEAEDRAM 695

Query: 564  AHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH-------------IKKMH 607
                   + N V IMTVH AKGLE   V ++   S+++                      
Sbjct: 696  DQGEQTVSPNRVDIMTVHAAKGLEFATVAVIGANSKMYKDGQQTITTETAASRPETLPSS 755

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSD--------------------------------L 635
            ++    D P   +  P  + +++  +                                  
Sbjct: 756  VIGDAVDIPEPLLEKPAKEWKDSGFNAYEYGFLDSTPRYAVSPDLEITKGSHFKESLERY 815

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-------------KKSNQRTWY 682
               L+     E  RL YV +TR+S +L I  H+   N+                  +   
Sbjct: 816  KYFLRMKEVRESTRLFYVAVTRSSHRLFITSHARERNDFQTMTFQPSNAAEGGKAPKKQK 875

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                 +    E    I  ++  + +    +E      E       +  +  +D     + 
Sbjct: 876  PHTPTAITPTELFASIAQSDEFSGNVVTWWEPGEELEEIYVERDSDEARFPVDFLGDKRG 935

Query: 743  LFSPIKNDINEPYILNPS-------------------------TIDTKGKTNLESLLSDN 777
                    + E      S                            +      +    + 
Sbjct: 936  AIEHAAALVKEKMRERESQGVGSICERVLSAAEAAKNGDTDADASGSPADEPEKENTPEK 995

Query: 778  QTFNRGLII-HKLLQV---------------------------------------IFTLP 797
            Q  +R  +  HKL++                                        +   P
Sbjct: 996  QRISRWRLTAHKLVEEKCLAERKEIEVELGSRINATEIVQLKKNPEELAKRRLRPVPFKP 1055

Query: 798  --EHKRKNFITSYCTKNA---KLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEV 849
              + KR      +  ++     L    +   +        E   +            + V
Sbjct: 1056 NSQAKRGTKFHQWIEEHYTLPTLLDDDQLPGIGEEDVTAEELAQLKENFLASPWADRTPV 1115

Query: 850  SVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            +V   I        ++G+ID +   +     + ++KT     Q           QL+ Y 
Sbjct: 1116 AVEQAIEYQIGSKRVTGKIDAVFRNTDGTWTVVDWKTGKVPSQRD---LPALSLQLAEYR 1172

Query: 909  KILKDSYPNK--------SLVCLLIYVSEPKVFIIPQNKLNK 942
                     +         +  +  YV E      P+  ++K
Sbjct: 1173 LAWAGIQSKREGRHVDPSEVEAVFFYVREGYTLK-PEALMDK 1213


>gi|182626164|ref|ZP_02953923.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens D
           str. JGS1721]
 gi|177908520|gb|EDT71048.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens D
           str. JGS1721]
          Length = 664

 Score =  227 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 100/556 (17%), Positives = 179/556 (32%), Gaps = 117/556 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +       YE  K +  +LDF+DL I    LLK+      I       I +IL+DE Q
Sbjct: 149 YDIFNKCYEAYETFKNERGLLDFDDLQIKAVTLLKENPH---ILGYYRNLIKYILVDEFQ 205

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D   +Q E +R +                +F VGDE QSIYSF GA PK ++  +   + 
Sbjct: 206 DCDEVQLEFLRLI-------------NNEVFCVGDEDQSIYSFRGATPKCMINFEENFE- 251

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RS  +I+ V   V    +        +              G
Sbjct: 252 -------GSEKVYLKYNYRSLKNIVEVSKDVIKHNKERYQKEIIAFN---------ENQG 295

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++L +      +                          A  IA  I             
Sbjct: 296 KIELKKPFNESEE--------------------------ANIIALKIEE----------S 319

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALG 425
           K+   +  D  +L R   ++              KI     D+     +H   +DL+A  
Sbjct: 320 KRLWNKYSDTAILYRTNMESRSFIDAF----IRKKIPFKLLDKEYNFFNHFICRDLIAYL 375

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  +   +   F  ++  P    S+  I+ +   + + E V++ +         + +   
Sbjct: 376 RLSIDPFNKEDFNKIINKPFRYVSKSAIYGVMNSKKK-ENVFDILMNVEGVHPFQMRKF- 433

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--S 543
           + +   I      S +     IL   +   Q+I  + ++     +  L+     + +   
Sbjct: 434 EELKSDIAYLNKLSLNSAIDFILSDLEY-SQYIREYSSKFKQNQEGLLDIVEEFKSSAME 492

Query: 544 YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + S+   +S +E             N + V + T+H  KG++   V +V+   +   HK+
Sbjct: 493 FKSIITFLSHIESVEENLENLNSKGNIDSVILSTMHGVKGMQFNDVHIVNIVDETIPHKN 552

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YVG+TRA + L
Sbjct: 553 S-------------------------------------MENLEEERRLFYVGITRAINNL 575

Query: 663 IICKHSNTSNEKKSNQ 678
            +    +   + K   
Sbjct: 576 YLYAPKSVRGKFKDPS 591


>gi|219685458|ref|ZP_03540276.1| DNA helicase [Borrelia garinii Far04]
 gi|219673014|gb|EED30035.1| DNA helicase [Borrelia garinii Far04]
          Length = 698

 Score =  227 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 92/544 (16%), Positives = 173/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L+       ++  +  +   I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFADLIIKPILMLRHS---KSLKESVQSKFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYSD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFDNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+++ + V S  +N       +              G+ +  
Sbjct: 270 -----KFYLVQNYRSNSNIVSIANGVISKNKNRYEKQITTQN------------GSGKRM 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +V Q  S       +     D                                     
Sbjct: 313 KFLVFQSTSDEAEYFSNLLVSNDIET---------------------------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           +   IKD++ L R ++++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYEREEIKDIICLLRLLINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D ++F+ M+  P     +  + KI +  ++ +  ++               A   +  F
Sbjct: 390 KDKIAFLRMINKPSRGIGKTTLDKIISSLNDDDVNFDLFCASKKTLSSLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            ++   +   +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNIYDELGRKLFEGNYINLSAFIEDVVIKFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGDFKSN-IFLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LII 
Sbjct: 591 LIIT 594


>gi|126455228|ref|YP_001065663.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            1106a]
 gi|242316641|ref|ZP_04815657.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            1106b]
 gi|126228870|gb|ABN92410.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            1106a]
 gi|242139880|gb|EES26282.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            1106b]
          Length = 1270

 Score =  227 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 129/1012 (12%), Positives = 284/1012 (28%), Gaps = 156/1012 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355  LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412  DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452  RYTLAVNQRSTPAIVGACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317  QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                        WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504  TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
              I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564  SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--------- 484
                   L S  F      ++++     E + +    +  +  G                
Sbjct: 620  LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASGNGGGARAASAGAPAPSPA 679

Query: 485  -------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFL 533
                   ++       + +       +  + G  +  ++ ++    E      + L E  
Sbjct: 680  DADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELT 739

Query: 534  NFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  +     +L+ L +   E      +    ++ N V+I+TVH +KGLE  +VF   
Sbjct: 740  QARASAQPGIAPTLRWLAAQRREGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPF 799

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                         +      +D+ G  +        +       +   +    E  RL+Y
Sbjct: 800  LNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVY 857

Query: 653  VGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            V +TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++   + W 
Sbjct: 858  VALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQ 917

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----- 765
            A           P+           + +  +      +   +   I + S++ +      
Sbjct: 918  ALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDE 977

Query: 766  --------------------------------------------GKTNLESLLSDNQTFN 781
                                                         +   + +L+  +   
Sbjct: 978  SGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAGDDILAFPRGAA 1037

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
             G  +H+LL++                  +          + L   +TRL+ +       
Sbjct: 1038 AGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELV 1097

Query: 836  ---MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQ 870
                +         +E+           + +                      + G ID 
Sbjct: 1098 PGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDM 1157

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1158 IVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1209


>gi|296313861|ref|ZP_06863802.1| exodeoxyribonuclease V, beta subunit [Neisseria polysaccharea ATCC
            43768]
 gi|296839590|gb|EFH23528.1| exodeoxyribonuclease V, beta subunit [Neisseria polysaccharea ATCC
            43768]
          Length = 1204

 Score =  227 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 136/984 (13%), Positives = 287/984 (29%), Gaps = 171/984 (17%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE--KLKK 102
            +  +    L+Q + +  +    + L    L       +  + +     +    E  KL  
Sbjct: 271  SFAELFDALEQKALSPDLPFLEAKLHERLLKLSSDKLEAGLKKGKTPDAAVFAELQKLAD 330

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
               +   + +      +       L L  YLN+   E KK      F+DL+++ +  L  
Sbjct: 331  FGRDLNALEEAEEATIIRLQ----LDLIGYLNSSLAEMKKSRRERGFDDLLLDVHTALTD 386

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               +  +   + +     LIDE QDT  +Q+E+ + +           +  R LF VGD 
Sbjct: 387  NPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---------IARNRPLFLVGDP 437

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQ+IYSF GA+    L+                    L  ++RS A ++  +  +F + E
Sbjct: 438  KQAIYSFRGADIYAYLQAAED----------AQHRYTLATNYRSHAALIGSIGALFRLKE 487

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL--PQES 340
            +   L     + +   ++R              S+   +    Q  W    D+    ++ 
Sbjct: 488  HPFVLENIGYSEV--GAARAE------------SRLSPKRPAVQLRWLHENDNEKANKDV 533

Query: 341  SASILARRIAYTISNMIGTDTI-FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A   A  I++ +        N K R +Q+ DI VLVR   +  +++   +     
Sbjct: 534  LRRRAADYCADEIAHALNEAAGCRLNFKGRPLQSGDIAVLVRTHNEAVMVSATLK----K 589

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             ++  V   R  +        L AL  F L      +   +L S +F F    +      
Sbjct: 590  RQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGFDAQQLHDFNQN 649

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
              E     E                   +                           + +S
Sbjct: 650  ESEILHWAE--------------SARTALDNW----NKYGIFAAMQQFSQTHGIETRLLS 691

Query: 520  RFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEV 572
            R     +    + L        +  + ++L + + +                  ++ + V
Sbjct: 692  RNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIRLESDEDLV 751

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +I+T+H +KGL+ P+V+         +     ++    +   +               + 
Sbjct: 752  KIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ---------LS 802

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY------ 686
             D  K        E  RLLYV +TRA +QL I    ++             +        
Sbjct: 803  EDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTANNPLAYLIEGLPQDSRETV 862

Query: 687  ---DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP--- 740
                +   D      +    +  +     +++       P        Q  +        
Sbjct: 863  RRAYACEKDGIAMLKRNWRRVADNAPSGTDFAFTEDAPPPAVYCGNADQTAEFAANSIPE 922

Query: 741  ------------------------KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                                    ++   P  +         PS  +T   ++  S+   
Sbjct: 923  RGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPS--ETPTASDGISVHDF 980

Query: 777  NQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
             +    GL +H++L+         +++  I     K    +       +        + P
Sbjct: 981  PKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEIWLPAVAEMAEACRKTP 1038

Query: 836  -------------------------------MMTTAMSCDS--YSEV--SVSGKINCPKK 860
                                            +    + D     EV  + +  ++    
Sbjct: 1039 LTGAYGLSDIPPECRCPEMGFTLHTEDFGIKRLRDWFARDDVRLPEVCRAAAETLDFHTV 1098

Query: 861  DIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKI 910
            +  ++G ID +       I I +YK+++             +     + +  Q  IY   
Sbjct: 1099 NGFLNGFIDMVCQDPDGNICIIDYKSNYLGADASAYTRQAMDEAVAHHHYYLQALIYAVA 1158

Query: 911  LKDSYPNK-----SLVCLLIYVSE 929
                +  +     ++    +++  
Sbjct: 1159 AARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|228957601|ref|ZP_04119351.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228802050|gb|EEM48917.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 630

 Score =  227 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 47  QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 106

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 107 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 166

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 167 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 216

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 217 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 265

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 266 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 307

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 308 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 341

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 342 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 398

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 399 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 457

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 458 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 517

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 518 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 567

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 568 ----------------ANDRITETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 609


>gi|322417957|ref|YP_004197180.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M18]
 gi|320124344|gb|ADW11904.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M18]
          Length = 1116

 Score =  227 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 119/874 (13%), Positives = 258/874 (29%), Gaps = 152/874 (17%)

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               YL A   + K+   V  F+DL+ +    L +    + +   I +     LIDE QDT
Sbjct: 218  FCDYLRAELPKRKRLRNVRSFDDLLGDLRAALTR--TGSTLPRLIRERYQAALIDEFQDT 275

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
              IQ+ +  ++                 F +GD KQ+IYSF GA+    +      ++R 
Sbjct: 276  DPIQFAIFDAIY--------PVGCEIPFFLIGDPKQAIYSFRGADIFAYMGAAEATEERH 327

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
            T          L  +FRS   ++  V+ +F+  +      +     +        +    
Sbjct: 328  T----------LLQNFRSEPGLIEAVNTLFASRDLPFLYPQIGFNKVEAAPKEASR---- 373

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF----- 363
                    +  +               + +  +   L   +A  I+ ++           
Sbjct: 374  ---LTEAGERKAPLKFWLAPRKDAGKPINKGDAWDQLPETVASEIARLLRGGAAGKLAIE 430

Query: 364  --------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                        +R +Q +DI VLVR  +   L+            I  V      L + 
Sbjct: 431  ELKKEGEDERWAQRAVQPRDIAVLVRANRQAKLMQRAL----TRRGIPSVLCSAGNLFES 486

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
                +L+ L   +     +      L + L   S  ++  +                   
Sbjct: 487  DEAAELLRLLSAVAQPGHESLLRGALATDLVGVSGAELALLMDDEK-------------- 532

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLN 534
                 ++ +++            S        +  +K R++ ++   G   +  L   + 
Sbjct: 533  ----GWEEILEEFRGYHDTWNTGSCMSMALQFMEKRKVRERLLAEPMGERRLTNLLHAIE 588

Query: 535  FTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
               + +      ++ +I+ L      E      +     +   V+++T+H +KGLE P+V
Sbjct: 589  TIHQAQVKERLGMEGVIAWLACRITEEPKKEEYEIRLETDEAAVQLVTIHKSKGLEYPIV 648

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            FL    ++                +D+    +    S+     +        +    E  
Sbjct: 649  FLPFCWAEFNGKDEGALF------HDEDRKVVLDIGSQE----LEMNKALAAQEALAESL 698

Query: 649  RLLYVGMTRASDQLIICK----------------HSNTSNEKKSNQRTWYDMVYDSFHND 692
            RLLYV +TR   +  +                     T+ + +   +        +    
Sbjct: 699  RLLYVALTRGKHRTYLIWGAFKDAGDSALHYLLHPDQTAAKGQVTLKDCEIRERLTSLAQ 758

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK-KLFSPIKNDI 751
                 I+L +    D           PE TP+    TI +                  ++
Sbjct: 759  SSSGAIELLDMPPADLEQYRARDERTPELTPVLFTGTITRDWRVASFTSLSSRQHHTAEL 818

Query: 752  NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR-KNFITSYCT 810
             +    +P    +        + +  +    G+ +HK+ + +       R +  +     
Sbjct: 819  PDRDEGSPVEEHSARDVEPSGIFAFPKGAKAGIFLHKIFEELDFTQAAARLEPLVDDQLD 878

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMS------CDSYSEVSVSGKINCPKKDII- 863
            K+   + A     +   +  +L+ P+ +  ++          +E+     ++    D + 
Sbjct: 879  KHG--FSADWSMAVREMVRNVLQAPLGSEGITLTQVGLERRLTELEFFFPLSLVTSDRLK 936

Query: 864  -------------------------------------ISGRIDQISISQQNIFIFEYKTH 886
                                                 + G ID +       +I ++K++
Sbjct: 937  EAAARFMARHDAADGTNFPVDVADLFSRLSFSPVKGMLLGFIDLVFEQGGRYYIVDWKSN 996

Query: 887  HH--VPQEIEHIPYT-------HIAQLSIYEKIL 911
            H    PQ+              +  Q  +Y   L
Sbjct: 997  HLGNAPQDYGQTALKRAMEENFYPLQYLLYTVAL 1030


>gi|219684489|ref|ZP_03539432.1| DNA helicase [Borrelia garinii PBr]
 gi|219671851|gb|EED28905.1| DNA helicase [Borrelia garinii PBr]
          Length = 698

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 92/544 (16%), Positives = 172/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L+       ++  +  +   I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFADLIIKPILMLRHS---KSLKESVQSKFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYSD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFNNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+++ + V S  +N       +              G+ +  
Sbjct: 270 -----KFYLVQNYRSNSNIVSIANGVISKNKNRYEKQITTQN------------GSGERM 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +V Q  S       +     D                                     
Sbjct: 313 KFLVFQSTSDEAEYFSNLLVSNDIET---------------------------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           +   IKD++ L R ++++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYEREEIKDIICLLRLLINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D ++F+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKIAFLRMINKPSRGIGKTTLDKIISSLNDDDVNFNLFCASKKTLSSLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            ++   +   +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNIYDELGRKLFEGNYINLSAFIEDVVIKFGLLNYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGDFKSN-IFLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LII 
Sbjct: 591 LIIT 594


>gi|124514961|gb|EAY56472.1| putative exodeoxyribonuclease V, beta subunit [Leptospirillum
            rubarum]
          Length = 1101

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 143/941 (15%), Positives = 284/941 (30%), Gaps = 152/941 (16%)

Query: 36   SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK-FTPQKNIITQEINKKSP 94
               ME          + L      +  E     +      ++      +    ++ +  P
Sbjct: 209  EEVMEQYRARRQTFREALGIVFPERSREVLPHRVRDLLGDREIPALGLSYDDADLGETFP 268

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK-NCVLDFEDLI 153
              ++ L++     ++         + +   +S         H E  +++   +  ++DLI
Sbjct: 269  PGEDALRELLGRTLQS-----ARDLQEVIRSSFRDLAGTWKHRELREREVRGIATYDDLI 323

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            +   D L++  V+     ++        +DE QDTS  Q  +   +  D   G       
Sbjct: 324  LRVADSLERESVAQ----RLRDRFPVAFVDESQDTSRDQSGIFARIYRDPRPGSA----- 374

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              LF +GD KQSIY F GA+    L   R  Q +++ A      + L +++RS+  +L  
Sbjct: 375  --LFWIGDPKQSIYRFRGADVGAYLEFSR--QAKSSPASPASPPLRLSVNYRSSPGVLHA 430

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            V+++F    +   L   S       S R       +L +   S       P +       
Sbjct: 431  VNRLFGRHPSPFLLEGVSYHPSSPVSGRK-----PELVDPAFSGSCFLVYPGRGPKDKLD 485

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
            D           AR  A  +  ++    + ++   R + A DI VLV K  D   +    
Sbjct: 486  D----------FARVTADEVDRLLSGKILLND---RPLAASDIAVLVPKNDDGERVAGFF 532

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I         +       ++  +   +LS          L + LF +    I
Sbjct: 533  RE----RGIPYNSASPGSVFHTREADEIATVLDALLSPWRMPVLCLALGTGLFGWDARRI 588

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
              +     +   V E   + +                   + +       F  +      
Sbjct: 589  DGLVRDPEQARPVQEVFLEAS------------------RLWRTHGIRAAFRELFFRMGV 630

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHSANHN- 570
              + +S         +D  ++   +      +        S     P       +     
Sbjct: 631  WTRLLSAGRT--RQRIDRLVDRIEKAAGQFPTPPDQHRFFSRARLSPEGESHEETVGGEP 688

Query: 571  --EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
               V I+TVH +KGLE PVVF+          K  K+       + +             
Sbjct: 689  GTGVHILTVHKSKGLEFPVVFVPFG----IPEKTRKEEEAFREEDGED------------ 732

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                         S Q E  RLLYV +TRA +++ +    N   +   +     D   + 
Sbjct: 733  -------------SDQSESLRLLYVALTRARERVYLFCPLNRKKQSALDHLLETDRHLEG 779

Query: 689  FHNDERVKKIKLT--NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                   +K       ++ +        S   P  +  ER     +   + +    + S 
Sbjct: 780  RREKTVTEKRFFAMREALEEAFSGVDGVSFFEPRESSGERNHKTPKEQGKVEDEIVVRSL 839

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDN--------------------QTFNRGLII 786
                     + + + I  +G+ +     +D                          G+ +
Sbjct: 840  AHPLPVPRRVTSFTAIVARGEDSDAWNGTDPLIGDEDGEDLSGNLVERPGAAGRAFGVFV 899

Query: 787  HKLLQ----VIFTLPEHK----RKNFITSYCTKNAKLWPAKEYKNLLLSITRL----LEN 834
            H +L+     I    + K     +  +  +   +    P+ E      S   L    L  
Sbjct: 900  HGVLEEAGKWIVRYKKAKKISPSRADVREWLRSSFPSRPSDEVGGWTASALELAEQGLCT 959

Query: 835  PM-------MTTAMSCDSYSEVSVSGKINCPKKDII------ISGRIDQISISQQNIFIF 881
            P+       +   +   S  E     ++   +          + G ID +  S + +++ 
Sbjct: 960  PLIPISGLPLADLLDDRSRFEEPFLLRLPDEENAGEREVASHLRGVIDVVVWSGKTVYLI 1019

Query: 882  EYKTHHH-------VPQEIEHIP--YTHIAQLSIYEKILKD 913
            +YKT+          P+ +E +   + +  Q  IY    + 
Sbjct: 1020 DYKTNFLTAEGNPYAPESLERVLSDHRYDLQARIYSGACRR 1060


>gi|238021964|ref|ZP_04602390.1| hypothetical protein GCWU000324_01869 [Kingella oralis ATCC 51147]
 gi|237866578|gb|EEP67620.1| hypothetical protein GCWU000324_01869 [Kingella oralis ATCC 51147]
          Length = 1220

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 146/970 (15%), Positives = 280/970 (28%), Gaps = 159/970 (16%)

Query: 43   NPTILKKAQTLQQASQTQCIEERFSLLSS-----FFLTQKFTPQKNIITQEINKKSPDLK 97
                  +   L Q S        + LL+         T +F   K    ++  +K     
Sbjct: 267  AARCEDRFAQLHQFSGCPSPATIWQLLTESKHTQAIFTAEFLQSKANQDKKSKQKIQLPA 326

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD-----FEDL 152
            E L    +    +        +     A + LA  +  HY   + +          F+DL
Sbjct: 327  EPLALINNTLGALATAAQRC-IQAQEQALIQLAHNII-HYLRTQNEANKKTSPSRQFDDL 384

Query: 153  IINTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS--LTEDFFVGKNT 209
            +++    L  ++  +  +   +       LIDE QDT  +Q+ + ++  +          
Sbjct: 385  LLDVYHALSPEKPHAQALARALSANWQTALIDEFQDTDPLQYAIFQAAFMQPPRQPENKC 444

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
            + +    + VGD KQ+IYSF GA+    L                 +   L  + RS A 
Sbjct: 445  NQNKTAFYMVGDPKQAIYSFRGADIYAYLAAAEHIP--------PANRHTLSQNHRSHAA 496

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            ++  ++ +FS   N   L +      R   S+                 D   +      
Sbjct: 497  LIHAINALFSR-PNPFALDKIPYHPARAARSQSKLPSGEAPLRLTWLNQDPTADDS---- 551

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                     ++     A+  A  I+  +          K  I A  I +LVR RK+  L+
Sbjct: 552  ---------DTLTQRAAQWCAQEIAVTLHA----HAQGKTPISAGQIAILVRTRKEGTLM 598

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                +     + I  V   R  +      + + AL  FIL+ +     + +L   L+N +
Sbjct: 599  QRQLKT----HHIQSVLLSRDSIYAEEETQAVYALISFILNPQRTQHLIYLLSGCLYNHT 654

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               I ++     +     +   + A                          +      L 
Sbjct: 655  ALQIQQLNQNEAQLTQWTDAANQAAQTWQQ------------------HGVYTALQQFLR 696

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLN-FTLRNEQNSYSSL--QELISELEQYPPTIKRAH- 565
              +     +S+  +  +  L + L     ++E+    S   Q L  +++           
Sbjct: 697  QFQAETTLLSQRNDRTLTNLHQILEILAAQDEKGQPPSALQQWLGQQIQASQNHANPQDH 756

Query: 566  -----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  ++ N V+I+T+H AKGL+ PVV+               ++              
Sbjct: 757  ALLRLESDENLVKIVTMHAAKGLQYPVVYCPFVWKARNQQPPEWQIIHQN---------- 806

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS---- 676
               Q   +  +     +  +   + E  RLLYV +TRA +QL I   S    E       
Sbjct: 807  HQAQLIHKTQLTDSDQQQAQTEQRSEDLRLLYVALTRAEEQLNIYIASYPQTENSPLAYL 866

Query: 677  ---------------------NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
                                          + + H +       LT           E  
Sbjct: 867  IQHQQPEKGKSKKDEYAHLQAQAYRQSWQNFIAQHPEHIQWHDTLTLPTYTGSLKTSEPQ 926

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN------ 769
            T+ P                +      L         E   L+PS   T+ +        
Sbjct: 927  TNEPTTYRATPIPPRSYRSPQHTSFTALSRHSTTQPTEHTPLDPSEQTTQPQNPQGSLKP 986

Query: 770  --LESLLSDNQTFNRGLIIHKLLQVIFTLPE-------------------HKRKNFITSY 808
                ++    Q    G+ +H LL+                           + ++ I   
Sbjct: 987  DDPPTIAQFPQGTAAGICLHSLLERYPFAQPGRQNLPLIQTTLDQHNINSQQWQDTIAQL 1046

Query: 809  CT--KNAKLWPAKEYKNLLLS-ITR---LLENPM------MTTAMSCDSYSEVSVSGK-- 854
                ++  L P      L    I      L +        + T  +  S     ++    
Sbjct: 1047 IEDTRHTPLLPRTSLSTLPPQNILTEFGFLLHTRNFTLGSLKTWFAQHSKLPPEITAAAQ 1106

Query: 855  -INCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQ 903
             ++       I+G ID ++ ++  +  I +YK++                    + +  Q
Sbjct: 1107 NLSFRDVQGYINGYIDLLAQTETGDTLILDYKSNWLGNSPSDYTQAALNQAIAQHHYALQ 1166

Query: 904  LSIYEKILKD 913
              +Y      
Sbjct: 1167 ALLYAIATAR 1176


>gi|229154895|ref|ZP_04283009.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 4342]
 gi|228628453|gb|EEK85166.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 4342]
          Length = 688

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 108/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    N    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPNLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|237794768|ref|YP_002862320.1| helicase, UvrD/REP family [Clostridium botulinum Ba4 str. 657]
 gi|229260849|gb|ACQ51882.1| helicase, UvrD/REP family [Clostridium botulinum Ba4 str. 657]
          Length = 669

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 99/555 (17%), Positives = 197/555 (35%), Gaps = 121/555 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YEE K K  +LDF+DL IN   LL + +    I    ++   +IL+DE QD   +Q  ++
Sbjct: 165 YEEYKDKKELLDFDDLQINMFKLLNEDE---RILKGYNKLFKYILVDEFQDCDTLQINIL 221

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L E             +LFAVGDE Q IYSF G++P+ ++      +K          
Sbjct: 222 QMLCE-----------GNSLFAVGDEDQCIYSFRGSKPECMVDFNHYFKK--------GE 262

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I L  ++RS  +I+ +   +    +       ++                         
Sbjct: 263 KIYLRYNYRSPKNIVEISKNLIKNNKLRNNKRIEAYNDYDKN------------------ 304

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                         S+ +   Q       A  I+  I+++I                KD+
Sbjct: 305 ----------IVLKSFLNEREQ-------AEEISKIINDIIKKG----------YGYKDV 337

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R   ++  +T     L    +I     D  +   +H   +D++A  +  +   D  
Sbjct: 338 AILYRTNMESRSLTD----LFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKK 393

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ ++ ++   ++   + ++ +++  +    + ++ ++ + + I+  
Sbjct: 394 SFLKIINKPFRYISKLNVERVRRYKYAKNS-FDILKEQKDIQPFQIKN-LENLEKDINKM 451

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
              S  D    I+      +              E++ ++DE             +S+  
Sbjct: 452 NKMSAQDAIGHIIHNLGYEEYIKEYSERIKIDKEELLQIVDELKEAAEEY-----TSILT 506

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +  +E+    I +    N + V + T+H  KG+E   V +V+       +         
Sbjct: 507 FLVHVEEVEKEINK-KEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYS-------- 557

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      K  ++   EE  RL YVG+TRA + L +     
Sbjct: 558 ---------------------------KADEEVNIEEERRLFYVGITRAKENLYLTVPKV 590

Query: 670 TSNEKKSNQRTWYDM 684
              + K N     + 
Sbjct: 591 IRGKNKENSNFIKEC 605


>gi|168184263|ref|ZP_02618927.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
 gi|182672651|gb|EDT84612.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf]
          Length = 670

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 99/555 (17%), Positives = 197/555 (35%), Gaps = 121/555 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YEE K K  +LDF+DL IN   LL + +    I    ++   +IL+DE QD   +Q  ++
Sbjct: 165 YEEYKDKKELLDFDDLQINMFKLLNEDE---RILKGYNKLFKYILVDEFQDCDTLQINIL 221

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L E             +LFAVGDE Q IYSF G++P+ ++      +K          
Sbjct: 222 QMLCE-----------GNSLFAVGDEDQCIYSFRGSKPECMVDFNHYFKK--------GE 262

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I L  ++RS  +I+ +   +    +       ++                         
Sbjct: 263 KIYLRYNYRSPKNIVEISKNLIKNNKLRNNKRIEAYNDYDKN------------------ 304

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                         S+ +   Q       A  I+  I+++I                KD+
Sbjct: 305 ----------IVLKSFLNEREQ-------AEEISKIINDIIKKG----------YGYKDV 337

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R   ++  +T     L    +I     D  +   +H   +D++A  +  +   D  
Sbjct: 338 AILYRTNMESRSLTD----LFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKK 393

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ ++ ++   ++   + ++ +++  +    + ++ ++ + + I+  
Sbjct: 394 SFLKIINKPFRYISKLNVERVRRYKYAKNS-FDILKEQKDIQPFQIKN-LENLEKDINKM 451

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
              S  D    I+      +              E++ ++DE             +S+  
Sbjct: 452 NKMSAQDAIGHIIHNLGYEEYIKEYSERIKIDKEELLQIVDELKEAAEEY-----TSILT 506

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +  +E+    I +    N + V + T+H  KG+E   V +V+       +         
Sbjct: 507 FLVHVEEVEKEINK-KEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYS-------- 557

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      K  ++   EE  RL YVG+TRA + L +     
Sbjct: 558 ---------------------------KADEEVNIEEERRLFYVGITRAKENLYLTVPKV 590

Query: 670 TSNEKKSNQRTWYDM 684
              + K N     + 
Sbjct: 591 IRGKNKENSNFIKEC 605


>gi|310799549|gb|EFQ34442.1| UvrD/REP helicase [Glomerella graminicola M1.001]
          Length = 988

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 102/686 (14%), Positives = 197/686 (28%), Gaps = 162/686 (23%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+   + + +LD++DL+    +LL+K              +  +LIDE QDT+ IQ+
Sbjct: 182 FREYQIHLEHSKLLDYDDLLTRCVELLRKHPSCV-------ANVQAVLIDEYQDTNGIQY 234

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E++R   +          +   +  VGD  QSIY +  AE K + R  R           
Sbjct: 235 ELMRLFAQ----------ARERITIVGDPDQSIYGWRSAEIKNLYRLLRDYP-------- 276

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I L  ++RS+  IL V  KV    +               R               
Sbjct: 277 DTDEISLEENYRSSQAILDVSLKVIQQDKKRYQKLLLPIHNKGTRPV------------- 323

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 L +  S+++ A  I   I  ++           +++  
Sbjct: 324 ----------------------LRRLKSSAVEAEWIVSEIKRIL-------LMAGKMLTH 354

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            D+ +L+R    +  I            I+      F   +   +K ++   R I   ++
Sbjct: 355 DDVAILLRSASLSRHIESAL----GKSGIAYRMVGGFKFYERAEVKVILDYLRVIHQPDN 410

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ----------- 482
           + +   ++  P     +  I  +  +   ++     +      G  + +           
Sbjct: 411 NDAVARIINVPRRGIGDMTIKSLLEEAESSKLSVWAMLNKHCRGERQAKTNIKKAMEQKI 470

Query: 483 --HVIKYIHELIHIAQFCS-------PHDFFTLILGAKKGRQQFISRFGNE---VIDVLD 530
              +++ +  L    Q            D    +L     ++     + +E       + 
Sbjct: 471 SGELLRLVSALRKKIQEPPTGSPYYHLVDLIENLLSQLNFQKYLQENYPDEHETRWANVQ 530

Query: 531 EFLNFTLRNEQN--------------------SYSSLQELISELEQYPPTIKRAHSANHN 570
           EF++      ++                       +L   ++ +       ++  + N  
Sbjct: 531 EFISLAGDFMRDLSTTADEDRLPVIDGVQQVQESDALGRFLANVSLASDAQQKGDADNKP 590

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V I T+H AKGLE PVVF+    +    H                              
Sbjct: 591 LVTISTIHAAKGLEWPVVFVPAVYNGSIPH------------------------------ 620

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY--DMVYDS 688
                   ++    +E  RLLYV MTRA   L +     +S    +          V   
Sbjct: 621 --------MRSEDLDEERRLLYVAMTRAQSLLYLSCPMYSSQHGGNGGERTELSKFVPSE 672

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL--------EREETIKQLMDEQKIP 740
            H   R +       I ++        +  P    +          E+ +     E    
Sbjct: 673 IHPYFRKRGPSFEPGILQEIGRILRRESKVPSQDKVFKEMPVLERPEDNLYPEDPEDSFE 732

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKG 766
                  +     P     S  +   
Sbjct: 733 DGAGGRNRQWQRRPRPQAVSASEEAD 758


>gi|294668059|ref|ZP_06733179.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292601874|gb|EFF45701.1| exodeoxyribonuclease V beta chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 1268

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 132/977 (13%), Positives = 263/977 (26%), Gaps = 107/977 (10%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L     ++ N   +   +       F  + ++      +   +      A          
Sbjct: 121  LLQAVHVAANALADAFQR---HGTAFFDAIMSAIEGGILSKVSYKPEWLASLWHWFEHFA 177

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                  +   +  L            ++   ++P     +    D ++    R   +   
Sbjct: 178  AAPSSNTAPHAKLLKLTAAELAAGTNKKFVDRTP--ASPMSHEIDGYLTALARVEAWCSR 235

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +       L     A     K++  V  ++DL+      L+     A +  ++  +    
Sbjct: 236  RRVALLHALRDDAIARLALLKRQRRVQTYDDLVDGVAHALQGAQADALV-KRLRTQYAIA 294

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QDT   QW +  ++  +  + +        LF +GD KQ+IY F G + +  L  
Sbjct: 295  LVDEFQDTDDRQWSIFSNVFGEGPLAQAA-GLEPALFLIGDPKQAIYGFRGGDVRTYL-- 351

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                      A        L  +FRS   +L  +D +++    A     D       R+ 
Sbjct: 352  --------AAAVTAELAPPLSHNFRSRPGVLAAIDALYAQAGYADAFLTDGIAFHPVRAG 403

Query: 301  RIGQVGTVQLWEQVVSQHD-SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                   +Q            +                   +  +        I   +  
Sbjct: 404  TKRVDEDLQRDGVTAPALTLWRAPEPPPPAKGKPKPWSAGRARELATAACVAAIRGWLAG 463

Query: 360  DTIFSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                +     R +QA DI VLVR   +   I      +     I  V   +  L      
Sbjct: 464  GRDGTATVCGRPVQAGDIAVLVRSHGEATRIQQALGAV----GIPAVAAGKQSLFATEEA 519

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             +L+AL + +L   DD      L + L       I  +          +   Q+ A    
Sbjct: 520  LELLALLQALLDPGDDSRLRAALATVLIGEDAIAIAAL----ERDGERHRRWQQQALDWR 575

Query: 479  SKFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
             ++Q    +  I EL               +L    G ++  +         L E L   
Sbjct: 576  ERWQRGGPLALIGELGATHG--------QRLLALVDGERRLTNYLQ------LAELLQEA 621

Query: 537  LRNE---QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                         L   I+  +      +    ++   V+I+T+H +KGLE P+VFL   
Sbjct: 622  DARALGPHGLVDWLSRRIANADDNDEAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYI 681

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            G         +   +               +++  +   S      K+  + E  RLLYV
Sbjct: 682  GIGRSDKGAGRHCVVHAPELGRQLHW----KTERDDPSWSAAEAAWKQEQRAEDARLLYV 737

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            G+TRA   L I       +E+ +       +        E    +  +        +   
Sbjct: 738  GLTRAEHALWIASGPFHQHERTALSAMLRALDALQGAAGEGTVVVDTSTPPAHLPRLPAP 797

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS----------TID 763
                 P     +R    +  +          +    D      +  S           + 
Sbjct: 798  SEAQVPLARNPQRHIAPEWWVYSFTQLASADAGAATDPMASATVVGSGGSDEPSGSEAVA 857

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP--------EHKRKNFITSYCTKNAKL 815
                T+ E           G+++H + +                                
Sbjct: 858  VAVATDAEPFDPRFAGNRFGVVMHDVFERCDFAAWQAWRPGQPAPDGQAAPILEALQRGG 917

Query: 816  WPAKEYKNLLLSITRLLEN---------PMMTTAMSCDSYSEVSVS-------------- 852
            +   +  + L  +T L+ +           +         +E+                 
Sbjct: 918  YAKDDLDDGLRMLTALIGHTLTVALPEGTRLADVPEPQRRNEMEFHFAMRPTRVDALLAL 977

Query: 853  -GKINCPKKDI----------IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---- 897
              +                  +++G ID         ++ +YK++         +     
Sbjct: 978  LHRFGVVGDRQAFGARQRLEGLMTGLIDLTYSVDGRWYVLDYKSNRLPSYAAAALARAMA 1037

Query: 898  -YTHIAQLSIYEKILKD 913
               +  Q  IY   L  
Sbjct: 1038 HSEYELQALIYTVALHR 1054


>gi|254682228|ref|ZP_05146090.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. CNEVA-9066]
          Length = 631

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 207/659 (31%), Gaps = 120/659 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 48  QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 107

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 108 ILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 166

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L       
Sbjct: 167 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------ 217

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 218 ----SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 265

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 266 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 308

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 309 ------------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVS 341

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R ++      S   +L +   
Sbjct: 342 R---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYI 398

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 399 GRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKK 457

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 458 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQ 517

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 518 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 568

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 569 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 610


>gi|312602470|ref|YP_004022315.1| exodeoxyribonuclease V subunit beta [Burkholderia rhizoxinica HKI
            454]
 gi|312169784|emb|CBW76796.1| Exodeoxyribonuclease V beta chain (EC 3.1.11.5) [Burkholderia
            rhizoxinica HKI 454]
          Length = 1245

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 124/992 (12%), Positives = 272/992 (27%), Gaps = 133/992 (13%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             K+LW     Q++      +  +        +    L    +     +R++ +    L  
Sbjct: 233  AKNLWRDEREQIAQRLADCATQLHQRTHKPSQVQAALAAWERFFVRGDRYAPVPKDALKL 292

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +        +    +    +          +     +  + F      L +     A 
Sbjct: 293  TSSSLTAATKVQCQPPTHPFFDCADALVAALRE-EQAMHLRRWFALVREWLRVGPSSVA- 350

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              E K+   ++ F+DL+ N +  L    V  W+   + +     LIDE QDT  +Q+ + 
Sbjct: 351  --ERKRTARIMSFDDLLANLHHAL---HVHPWLADALRERYPAALIDEFQDTDPLQFAIF 405

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
              +                LF VGD KQ+IYSF  A+    L  +     R T       
Sbjct: 406  NQIFA----------PKGPLFLVGDPKQAIYSFRAADLHTYLDARAHASARYT------- 448

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RS   ++   +++F     A  L       +  R++   +   V   + + +
Sbjct: 449  ---LAVNQRSDPALIAACNRLFGANPRAFVLDGLDYHPV--RAAMRSRPAFVDRHDPLGA 503

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKD 375
              D      +  W      L +  +    A   A  I+ ++              +   +
Sbjct: 504  S-DGSGAALRVWWLPDHAPLSKRDAERAAAEACAAEIARLMRDARAGDATIGTEPLAPAN 562

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I VLV+  +   L+  + R     + I  V   +  +   +  +    L   I +  D  
Sbjct: 563  IAVLVQAHRQGMLMKRVLR----GWGIGSVELAQASVFASIDAEQFERLLLAIDTPGDLR 618

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                 L +         ++ I              +             ++       + 
Sbjct: 619  RLRAALATDWIGLDAAALWAIEQGEP---AAAAAGRCEPVPSELDSASWVERFAGYRLLW 675

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELI 551
                    + +++   +  Q+  S    E      + L E +            +L  L 
Sbjct: 676  HERGFAPMWRIVMRELRIAQRLASADDGERRLTDVNHLAELIQARDSEHPGIAPTLCWLS 735

Query: 552  SELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++          +    ++ + V+I+T+H +KGLE PVVF     +             +
Sbjct: 736  AQRADPDVGDETQLRLESDRDLVQIVTIHKSKGLEYPVVFCPFLTNGALRAGPSCAALPV 795

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                        +      +         +++    E  RL+YV +TRA  +  +     
Sbjct: 796  AREYHREDGLAVLHFGCDGDEAQRIDRG-VRREQAAERARLIYVALTRAVYRCYLVAGIY 854

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
            TS    S +     ++              L          A   +    +   +     
Sbjct: 855  TSGAHASTKEARQSVLNWLVAGGSTHFDAWLDGPPETAALAACWRALPGDDEGVVVVPLP 914

Query: 730  IKQLMDEQKIPKKLFS------PIKNDINEPYILNPSTIDTKGKTNLESLLS-------- 775
                 D    P           P +   +   I + S++ +  +  L  +          
Sbjct: 915  TVARRDPLPPPDASHVDVHARVPARRLFDAWRIASFSSLASTRQRPLPDIDDVLHARPDH 974

Query: 776  ----------------------------------DNQTFNRGLIIHKLLQVIFTLPEHKR 801
                                                +    G  +H+L+++         
Sbjct: 975  DDDVAQADTQAIKADLEPMPTNASPGLRDDDILRFPRGPAAGDCLHRLMELADLRDPSSW 1034

Query: 802  KNFITSYCTKNA---KLWPAKEYKNLLLSITRLLENPMMTTAM------SCDSYSEVSVS 852
               I    T+     +    ++   ++  + R L +  +               +E+   
Sbjct: 1035 PTAIVRALTEQPVSSRELSTEQLSAMMTRLLRDLAHTPLEADFMLGELDPSRRLTELEFV 1094

Query: 853  GKIN-------------------CPKKDII---ISGRIDQISISQQNIFIFEYKTH---- 886
              +                         ++   + G ID +   +   +I ++K++    
Sbjct: 1095 FPVASLDMRRFATMLEEHGIAGMALDDGVLHGYLKGFIDAVIEFRGRFWIIDWKSNYLGN 1154

Query: 887  -----HHVPQEIEHIPYTHIAQLSIYEKILKD 913
                            + +  Q  IY   L  
Sbjct: 1155 SPHAYRAAELSAAMDAHAYRLQALIYTIALHR 1186


>gi|229043074|ref|ZP_04190803.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
 gi|228726259|gb|EEL77487.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
          Length = 630

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 47  QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 106

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 107 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 166

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 167 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 216

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 217 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 265

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 266 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 307

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 308 -----------------EANQILQLIQEKVDSGDR---------NYKDFCLLYRTHSVSR 341

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 342 ---SLLDQLTIHKVPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 398

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 399 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 457

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 458 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 517

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 518 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 567

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 568 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 609


>gi|76811844|ref|YP_332924.1| exodeoxyribonuclease V subunit beta [Burkholderia pseudomallei 1710b]
 gi|76581297|gb|ABA50772.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
            1710b]
          Length = 1934

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 129/1012 (12%), Positives = 283/1012 (27%), Gaps = 156/1012 (15%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
               +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 903  AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 962

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 963  TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 1018

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
              + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 1019 LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 1075

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 1076 DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 1115

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 1116 RYTLAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 1167

Query: 317  QHDSQCNPQQESWTSYF--DSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                        WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 1168 TDPLAGAGDFRIWTLPVGDDVLTKRDAQRHAAHACAAEIARLMRGAREHAVTLGGEPLAA 1227

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
              I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 1228 SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 1283

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--------- 484
                   L S  F      ++++     E + +       +  G                
Sbjct: 1284 LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAAGGASGNGGGARAASAGAPAPSPA 1343

Query: 485  -------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFL 533
                   ++       + +       +  + G  +  ++ ++    E      + L E  
Sbjct: 1344 DADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELT 1403

Query: 534  NFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  +     +L+ L +   E      +    ++ N V+I+TVH +KGLE  +VF   
Sbjct: 1404 QARASAQPGIAPTLRWLAAQRREGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPF 1463

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                         +      +D+ G  +        +       +   +    E  RL+Y
Sbjct: 1464 LNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVY 1521

Query: 653  VGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            V +TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++   + W 
Sbjct: 1522 VALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQ 1581

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK----- 765
            A           P+           + +  +      +   +   I + S++ +      
Sbjct: 1582 ALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARDE 1641

Query: 766  --------------------------------------------GKTNLESLLSDNQTFN 781
                                                         +   + +L+  +   
Sbjct: 1642 SGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAAAPRELAGDDILAFPRGAA 1701

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
             G  +H+LL++                  +          + L   +TRL+ +       
Sbjct: 1702 AGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAATELV 1761

Query: 836  ---MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQ 870
                +         +E+           + +                      + G ID 
Sbjct: 1762 PGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGFIDM 1821

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1822 IVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 1873


>gi|49477145|ref|YP_035463.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49328701|gb|AAT59347.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 688

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 109/658 (16%), Positives = 208/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   + T           S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHTASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    N    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPNLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|308067346|ref|YP_003868951.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
 gi|305856625|gb|ADM68413.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
          Length = 808

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/693 (13%), Positives = 202/693 (29%), Gaps = 96/693 (13%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +         +    +      ++   + AK     YE  K++   +DF+D+++  + LL
Sbjct: 182 ESLLSALSAWKAEGRSADELPESVREESDAKRAMLAYEAWKQERNKMDFDDILLRASALL 241

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  D    +   + +  +HI++DE QDT+ +Q+E+++ L              R L  VG
Sbjct: 242 RDPD----VLQPLQRRFSHIMVDEFQDTNALQYEMVQRLAA----------RHRNLMVVG 287

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ Q+IY+F+GA  + +L   ++         +   +I L +++RS A IL +   + + 
Sbjct: 288 DDDQTIYTFNGARQESILEFDKVY--------KDAKVITLDINYRSDARILGLGSNIVAK 339

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             + +     +              G  +                               
Sbjct: 340 NVHRRSKRLSAAGREGLPPQFATPSGPEE------------------------------- 368

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   +   +             ++ +DI +L R    +  I      L    
Sbjct: 369 ----EAGHIVTHLLGQVEEGR---------LRYRDIAILHRTASGSRSI---FEQLIMRD 412

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK----SPLFNFSEDDIFKI 456
              +      +  D   I+ LM   R  L+     S    L     S           + 
Sbjct: 413 VPFIQYGAGAVFYDQSLIRPLMDHLRLSLNPRRMESIPSTLGPLYVSREAGMEWIMREEK 472

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK--KGR 514
              +           +  +    + +  I+ I  L  +    +  +   +        G 
Sbjct: 473 QQAKKYPLIHLSRWDRLRDFQREQVKERIRLIRSLTTMKPAYAIQEMRRVFYDKYLESGD 532

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR-AHSANHNEVR 573
               + +   + + L+E      R +            EL +    ++      + + VR
Sbjct: 533 TGAWTHYKETMQESLEELETAAKRFDTVEA--FVSFADELSERHRQMESLRREEDSDAVR 590

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE P V+ +     +  H       +                        +
Sbjct: 591 LMTIHRAKGLEFPCVYWIGASEGILPHSSALHSELPEDRRAG----------------AA 634

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +  EE  RL YV +TRA + L I   ++   +  +  R   +    +    +
Sbjct: 635 PTTAVDNDAALEEERRLAYVAVTRAKELLYITSPASNHGKPAAVSRFLLEAYGVTPETSK 694

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
              +             +       P +    R  +               +    +   
Sbjct: 695 PETRRSSFGQPKGASGYSNRAGAGSPASGTATRVSSRPGPGSATARTTSSVAGSPAEPRI 754

Query: 754 PYILNPSTIDT--KGKTNLESLLSDNQTFNRGL 784
              +   T            +        + G 
Sbjct: 755 NVPVWKCTDGACKAWMRRDTTSGRRTSAASTGT 787


>gi|164658916|ref|XP_001730583.1| hypothetical protein MGL_2379 [Malassezia globosa CBS 7966]
 gi|159104479|gb|EDP43369.1| hypothetical protein MGL_2379 [Malassezia globosa CBS 7966]
          Length = 876

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 107/790 (13%), Positives = 209/790 (26%), Gaps = 170/790 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L +       ++   ++             ++ + ++  K       + +++   +    
Sbjct: 109 LSRQFTIADADDAKRIIKDICADFD----ADMASDDVRVKPETAIAAISRAKSRCMNAVQ 164

Query: 113 RFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             +  K    T      T    + A YE     +  LDF+DL++    L ++    +   
Sbjct: 165 WRSMSKYPPGTAMHEEHTYVCRIYAEYESRLASHNALDFDDLLMYGVKLFREHPFLSLDH 224

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                 I H+L+DE QDT+ +Q+E++  ++             + +  VGD  QSIYS+ 
Sbjct: 225 ------IEHVLVDEFQDTNAVQYELMCHMSA----------GNKCVSIVGDPDQSIYSWR 268

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            A+   + R +                + L  +FRST  IL     V    +        
Sbjct: 269 HADVSHLERMRTDFP--------GVQRVLLEQNFRSTPSILDAALSVMQQDKLRIQKGLY 320

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           ++                                      ++ D+  +       AR IA
Sbjct: 321 TSHA----------------------------QGAPVVLRAFHDADEE-------ARYIA 345

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I   +            ++   DI +L+R    +  +    +     + I        
Sbjct: 346 LEILRHVQ-------CTGGLLTFADISILLRFNAQSRPLEAALQ----RHGIPYRILGGL 394

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--- 467
              D   IKDL+A      +       + +L  P        +  +       +      
Sbjct: 395 RFFDRAEIKDLLAYLVVTENPAYTPGVLRILNVPKRGIGTKSVQALLAAAQAEQVPLLTY 454

Query: 468 ------EYIQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISR 520
                           +      ++ I EL + A+   S  D   L+L   +  +     
Sbjct: 455 LERVSPAAAYGMRPAVVKSVSQFVQTIQELRNAAENGSSVADLLHLVLKLTRYEEHLRPD 514

Query: 521 FGNE-VIDVLDEFLNFTLRNE---------------------QNSYSSLQEL-------- 550
              +   + + E ++F    +                     +N      E         
Sbjct: 515 PDFDSRWENVQELVSFASSIDLPPQSPPSHHGEPVRKRARVSENRPEDANEFSVHNIVDN 574

Query: 551 ------------ISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                        + LE       +     +    V I T H AKGLE PVVFL  +   
Sbjct: 575 VHADEEVATTPLSAFLESSALASDLGVQEGSPPAMVTISTCHAAKGLEWPVVFLPASEDG 634

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           ++                                                   L YV MT
Sbjct: 635 IYPFYRSTTPEERREERR-----------------------------------LYYVAMT 659

Query: 657 RASDQLIICKHSN----TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           RA   LI+         +    +        +V  +      + K  +++         +
Sbjct: 660 RAQTNLILSWSHRRLVMSEWSSRQLSPFLAPLVSKAHGGHVPLDKKPMSDESWSHVSPPF 719

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
             +      + L R     + ++E        SP            PS   +    +   
Sbjct: 720 THAWLGVTASILSRSPITLERLNELA-EAFATSPTGQQYRRISAQIPSGTPSAPWPSTLP 778

Query: 773 LLSDNQTFNR 782
                     
Sbjct: 779 RTDSFTNAEV 788


>gi|153941231|ref|YP_001390777.1| hypothetical protein CLI_1512 [Clostridium botulinum F str.
           Langeland]
 gi|152937127|gb|ABS42625.1| hypothetical protein CLI_1512 [Clostridium botulinum F str.
           Langeland]
 gi|295318849|gb|ADF99226.1| hypothetical protein CBF_1489 [Clostridium botulinum F str. 230613]
          Length = 670

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 100/555 (18%), Positives = 198/555 (35%), Gaps = 121/555 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YEE K K  +LDF+DL IN   LLK+ +    I    ++   +IL+DE QD   +Q  ++
Sbjct: 165 YEEYKDKKELLDFDDLQINMFKLLKEDE---RILKGYNKLFKYILVDEFQDCDTLQINIL 221

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L+E             +LFAVGDE Q IYSF G++P+ ++      +K          
Sbjct: 222 QMLSE-----------GNSLFAVGDEDQCIYSFRGSKPECMVDFNHYFKK--------GE 262

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I L  ++RS  +I+ +   +    +       ++                         
Sbjct: 263 KIYLRYNYRSPKNIVEISKNLIKNNKLRNNKRIEAYNDYDKN------------------ 304

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                         S+ +   Q       A  I+  I+++I                KD+
Sbjct: 305 ----------IVLKSFLNEREQ-------AEEISKIINDIIKKG----------YGYKDV 337

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R   ++  +T     L    +I     D  +   +H   +D++A  +  +   D  
Sbjct: 338 AILYRTNMESRSLTD----LFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKK 393

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ ++ ++   ++   + ++ +++  +    + ++ ++ + + I+  
Sbjct: 394 SFLKIINKPFRYISKLNVERVRRYKYAKNS-FDILKEQKDIQPFQIKN-LEDLEKDINKM 451

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
              S  D    I+      +              E++ ++DE              S+  
Sbjct: 452 NKMSAQDAIGHIIHNLGYEEYIKEYSERIKIDKEELLQIVDELKEAAEEY-----ISILT 506

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +  +E+    I +    N + V + T+H  KG+E   V +V+       +         
Sbjct: 507 FLVHVEEVEKEINK-KEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYS-------- 557

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      K  ++   EE  RL YVG+TRA + L +     
Sbjct: 558 ---------------------------KADEEVNIEEERRLFYVGITRAKENLYLTVPKV 590

Query: 670 TSNEKKSNQRTWYDM 684
              + K N     + 
Sbjct: 591 IRGKNKENSNFIKEC 605


>gi|170757205|ref|YP_001781068.1| hypothetical protein CLD_3123 [Clostridium botulinum B1 str. Okra]
 gi|169122417|gb|ACA46253.1| hypothetical protein CLD_3123 [Clostridium botulinum B1 str. Okra]
          Length = 670

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 100/555 (18%), Positives = 199/555 (35%), Gaps = 121/555 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YEE K K  +LDF+DL IN   LLK+ +    I    ++   +IL+DE QD   +Q  ++
Sbjct: 165 YEEYKDKKELLDFDDLQINMFKLLKEDE---RILKGYNKLFKYILVDEFQDCDTLQINIL 221

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L+E             +LFAVGDE Q IYSF G++P+ ++      +K          
Sbjct: 222 QMLSE-----------GNSLFAVGDEDQCIYSFRGSKPECMVDFNHYFKK--------GE 262

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I L  ++RS  +I+ +   +    +       ++                         
Sbjct: 263 KIYLRYNYRSPKNIVEISKNLIKNNKLRNNKRIEAYNDYDKN------------------ 304

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                         S+ +   Q       A  I+  I+++I                KD+
Sbjct: 305 ----------IVLKSFLNEREQ-------AEEISKIINDIIKKG----------YGYKDV 337

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R   ++  +T     L    +I     D  +   +H   +D++A  +  +   D  
Sbjct: 338 AILYRTNMESRSLTD----LFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKK 393

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ ++ ++   ++   + ++ +++  +    + ++ ++ + + I+  
Sbjct: 394 SFLKIINKPFRYISKLNVERVRRYKYAKNS-FDILKEQKDIQPFQIKN-LEDLEKDINKM 451

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
              S  D    I+      +              E++ ++DE             +S+  
Sbjct: 452 NKMSAQDAIGHIIHNLGYEEYIKEYSERIKIDKEELLQIVDELKEAAEEY-----TSILT 506

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +  +E+    I +    N + V + T+H  KG+E   V +V+       +         
Sbjct: 507 FLVHVEEVEKEINK-KEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYS-------- 557

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      K  ++   EE  RL YVG+TRA + L +     
Sbjct: 558 ---------------------------KADEEVNIEEERRLFYVGITRAKENLYLTVPKV 590

Query: 670 TSNEKKSNQRTWYDM 684
              + K N     + 
Sbjct: 591 IRGKNKENSNFIKEC 605


>gi|54020194|ref|YP_115928.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 232]
 gi|53987367|gb|AAV27568.1| ATP-dependent DNA helicase [Mycoplasma hyopneumoniae 232]
          Length = 769

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/582 (17%), Positives = 189/582 (32%), Gaps = 130/582 (22%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   +   Y E  K+N ++DF+DL++ T    +K      IR +  ++ + +L+DE 
Sbjct: 195 LDQIKVQVYQKYLEKTKENNIIDFDDLLLYTKIAFEKSPE---IRSRWQRKFDFVLVDEF 251

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDTSL+Q+ +++   +D             L  VGD  Q+IYS+ GA+P  +L  ++   
Sbjct: 252 QDTSLVQYLILKIFIKDKT----------RLVVVGDPDQTIYSWRGADPSLILNLEQDFP 301

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       + L  ++RST +IL   + +    +N       +++  +         
Sbjct: 302 --------DLQTVILDKNYRSTQNILDAANNLIENNQNRIKKKLVASSKEKIEIHFEDLA 353

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                             +        I   I  +I        
Sbjct: 354 ----------------------------------NERGAEVEWIYRKIQELI-------- 371

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K  +  +DI +L R       I        + + I    +    L     I++ +   
Sbjct: 372 -TKNKVTYRDIAILARSNFYFKQIETKF----DGHNIPYFRHGASPLVTKKEIREALYFL 426

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF----------- 473
           + I +  D  +F  ++  P        I K+          +++++ K+           
Sbjct: 427 KVIDN-SDPYAFEQIINVPPKKIGIATINKLNELAAQFGLNLHDFLFKYYSGKINFKGKQ 485

Query: 474 -----ANCGISKFQHVIKYI---HELIHIAQFCSP--HDFFTLILG----AKKGRQQFIS 519
                 +    K + +++ I          +   P    F++ +L               
Sbjct: 486 GKIPLGHDNQLKIKVLLERISAAKRFKSQIEEKKPCIFQFYSQVLDSFLKKIDYFDAIKD 545

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                    L E     + N Q +    ++L   L+ Y        + + N++ ++TVH+
Sbjct: 546 AKQASDTRNLLEKYYKIMDNWQKANPE-KKLSDYLD-YAAISHFEQTESQNKINLLTVHS 603

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE   VFLV     VF                                    ++   
Sbjct: 604 SKGLEFEYVFLVGMNQGVFP--------------------------------AQKVLDQN 631

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQRT 680
             S  EE  RL +V +TRA   L I   +   S  +   Q+ 
Sbjct: 632 STSEYEEERRLAFVAVTRAKRVLYITNGYRAPSFARGLPQKF 673


>gi|47569157|ref|ZP_00239844.1| ATP-dependent DNA helicase [Bacillus cereus G9241]
 gi|47554129|gb|EAL12493.1| ATP-dependent DNA helicase [Bacillus cereus G9241]
 gi|324325344|gb|ADY20604.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 688

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    N    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPNLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|294497510|ref|YP_003561210.1| ATP-dependent DNA helicase [Bacillus megaterium QM B1551]
 gi|294347447|gb|ADE67776.1| ATP-dependent DNA helicase [Bacillus megaterium QM B1551]
          Length = 772

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 91/612 (14%), Positives = 193/612 (31%), Gaps = 108/612 (17%)

Query: 81  QKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           ++ ++ +   +   D K+    ++  +    ++     K  +          +L   YEE
Sbjct: 261 KEQMVKEAARELYVDEKDFPFDQALQQIGYWKNTLVGVKDVRPKDKWEQDVHFLYRRYEE 320

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            KK+  + DF+D++    ++LK+      +  +  +   + LIDE QD + +Q+++++ L
Sbjct: 321 VKKQKQLFDFDDMLYGCYEMLKQNPD---LLTRYQKRFRYFLIDEFQDINKVQYKIMKML 377

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
           +ED           + L  VGD+ QSIY+F G++P  +L  ++             ++I 
Sbjct: 378 SED----------SKNLCVVGDDDQSIYAFRGSDPSFILNFEKDFAN--------TTVIT 419

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS   I++  +KV +     +     +      R +                   
Sbjct: 420 LNQNYRSAHAIVSSANKVIARNTARRQKEMAAQFDNELRPT------------------- 460

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                    +   +D   +       A  I   +   I                 D  VL
Sbjct: 461 ---------FFFPYDEEEE-------ATMIVTDMKEKIKQG----------ASPTDFAVL 494

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  I          + I     D         ++ L++  R  ++  D  S   
Sbjct: 495 YRTHASSRAIFERLSQSNLPFSIE---QDADSFYKRRMVRSLLSFLRLSVNPNDASSLQD 551

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           ++ +      +  +  +       +  +    ++        Q  +K +  L    +  S
Sbjct: 552 LVNALF--LKKTAVNDLKAASILHDGTFIDALEYLQDLKPFQQKKLKKVIPLFKSLKSMS 609

Query: 500 PHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           P      I            R        +  D + +      +    +   L E +  +
Sbjct: 610 PSLALETISKDMGFDDFVKKRGNEGNMMEKGSDDVRDLKVVARKF--KTVPELLEHVDHM 667

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 +K      +  +++ T+H AKGLE   V+++ +      H              
Sbjct: 668 IAMNTEMKALSKQFNESIQLTTIHRAKGLEYKHVYVLSSVDGGLPHD------------- 714

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                              +  +       +E  RLLYV MTRA + L +        + 
Sbjct: 715 ----------------YALEAYRGGDDVPLQEERRLLYVAMTRAQNSLYLSVPQTRRGKT 758

Query: 675 KSNQRTWYDMVY 686
               R     + 
Sbjct: 759 AYPSRFLKSFIK 770


>gi|144227619|gb|AAZ44502.2| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae J]
          Length = 753

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/582 (17%), Positives = 189/582 (32%), Gaps = 130/582 (22%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   +   Y E  K+N ++DF+DL++ T    +K      IR +  ++ + +L+DE 
Sbjct: 179 LDQIKVQVYQKYLEKTKENNIIDFDDLLLYTKIAFEKSPE---IRSRWQRKFDFVLVDEF 235

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDTSL+Q+ +++   +D             L  VGD  Q+IYS+ GA+P  +L  ++   
Sbjct: 236 QDTSLVQYLILKIFIKDKT----------RLVVVGDPDQTIYSWRGADPSLILNLEQDFP 285

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       + L  ++RST +IL   + +    +N       +++  +         
Sbjct: 286 --------DLQTVILDKNYRSTQNILDAANNLIENNQNRIKKKLVASSKEKIEIHFEDLA 337

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                             +        I   I  +I        
Sbjct: 338 ----------------------------------NERGAEVEWIYRKIQELI-------- 355

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K  +  +DI +L R       I        + + I    +    L     I++ +   
Sbjct: 356 -TKNKVTYRDIAILARSNFYFKQIETKF----DGHNIPYFRHGASPLVTKKEIREALYFL 410

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF----------- 473
           + I +  D  +F  ++  P        I K+          +++++ K+           
Sbjct: 411 KVIDN-SDPYAFEQIINVPPKKIGIATINKLNELAAQFGLNLHDFLFKYYSGKINFKGKQ 469

Query: 474 -----ANCGISKFQHVIKYI---HELIHIAQFCSP--HDFFTLILG----AKKGRQQFIS 519
                 +    K + +++ I          +   P    F++ +L               
Sbjct: 470 GKIPLGHDNQLKIKVLLERISAAKRFKSQIEEKKPCIFQFYSQVLDSFLKKIDYFDAIKD 529

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                    L E     + N Q +    ++L   L+ Y        + + N++ ++TVH+
Sbjct: 530 AKQASDTRNLLEKYYKIMDNWQKANPE-KKLSDYLD-YAAISHFEQTESQNKINLLTVHS 587

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE   VFLV     VF                                    ++   
Sbjct: 588 SKGLEFEYVFLVGMNQGVFP--------------------------------AQKVLDQN 615

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQRT 680
             S  EE  RL +V +TRA   L I   +   S  +   Q+ 
Sbjct: 616 STSEYEEERRLAFVAVTRAKRVLYITNGYRAPSFARGLPQKF 657


>gi|312601375|gb|ADQ90630.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 168]
          Length = 753

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/582 (17%), Positives = 189/582 (32%), Gaps = 130/582 (22%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   +   Y E  K+N ++DF+DL++ T    +K      IR +  ++ + +L+DE 
Sbjct: 179 LDQIKVQVYQKYLEKTKENNIIDFDDLLLYTKIAFEKSPE---IRSRWQRKFDFVLVDEF 235

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDTSL+Q+ +++   +D             L  VGD  Q+IYS+ GA+P  +L  ++   
Sbjct: 236 QDTSLVQYLILKIFIKDKT----------RLVVVGDPDQTIYSWRGADPSLILNLEQDFP 285

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       + L  ++RST +IL   + +    +N       +++  +         
Sbjct: 286 --------DLQTVILDKNYRSTQNILDAANNLIENNQNRIKKKLVASSKEKIEIHFEDLA 337

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                             +        I   I  +I        
Sbjct: 338 ----------------------------------NERGAEVEWIYRKIQELI-------- 355

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K  +  +DI +L R       I        + + I    +    L     I++ +   
Sbjct: 356 -TKNKVTYRDIAILARSNFYFKQIETKF----DGHNIPYFRHGASPLVTKKEIREALYFL 410

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF----------- 473
           + I +  D  +F  ++  P        I K+          +++++ K+           
Sbjct: 411 KVIDN-SDPYAFEQIINVPPKKIGIATINKLNELAAQFGLNLHDFLFKYYSGKINFKGKQ 469

Query: 474 -----ANCGISKFQHVIKYI---HELIHIAQFCSP--HDFFTLILG----AKKGRQQFIS 519
                 +    K + +++ I          +   P    F++ +L               
Sbjct: 470 GKIPLGHDNQLKIKVLLERISAAKRFKSQIEEKKPCIFQFYSQVLDSFLKKIDYFDAIKD 529

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                    L E     + N Q +    ++L   L+ Y        + + N++ ++TVH+
Sbjct: 530 AKQASDTRNLLEKYYKIMDNWQKANPE-KKLSDYLD-YAAISHFEQTESQNKINLLTVHS 587

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE   VFLV     VF                                    ++   
Sbjct: 588 SKGLEFEYVFLVGMNQGVFP--------------------------------AQKVLDQN 615

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQRT 680
             S  EE  RL +V +TRA   L I   +   S  +   Q+ 
Sbjct: 616 SSSEYEEERRLAFVAVTRAKRVLYITNGYRAPSFARGLPQKF 657


>gi|319649937|ref|ZP_08004087.1| YjcD protein [Bacillus sp. 2_A_57_CT2]
 gi|317398375|gb|EFV79063.1| YjcD protein [Bacillus sp. 2_A_57_CT2]
          Length = 772

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 94/551 (17%), Positives = 181/551 (32%), Gaps = 109/551 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L   YE+ K +  + DF+D++   + L         I  +     ++ LIDE QD +
Sbjct: 305 TAILYERYEQTKLRRELFDFDDMLTGCHTLF---HEKPEILEQYQNRFHYFLIDEFQDIN 361

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+E+++ L++            + + AVGD+ QSIY+F G++P+ +L  ++       
Sbjct: 362 NVQYELMKMLSD----------KTKNVCAVGDDDQSIYAFRGSDPQYLLDFEKDFP---- 407

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L  ++RS  +I++  +++ S+ ++ +  S ++  +               
Sbjct: 408 ----GAKVITLNQNYRSAHEIVSAANQIISLNKHRRVKSMNAQFSGGQHPF--------- 454

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                  FD   +       A  I   I   I            
Sbjct: 455 -------------------LFFPFDEEEE-------ATMIMTDIQEKIEEG--------- 479

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKDLMALGRFI 428
             + +D  VL R    +  I         +  +      D     D   ++ ++A  +  
Sbjct: 480 -YEPRDFAVLFRTHTGSRAIFERL----ANSSLPFKLDQDAESFYDRFIVRSMLAFLKLS 534

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           L+++D  +   ML S     S   +  I  +    +       KF   G +  +  +K +
Sbjct: 535 LNEDDQNALKDMLPSLFVKQSV--LQDIKAESILQDCSMLECLKFIKTGFAFQESKLKKV 592

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRNEQNS 543
             +       SP      +      +     R       ++  D + +        +   
Sbjct: 593 IPVTRSISGLSPITAIETVEKELGFQDFIKKRGNEGNKMDKGSDDIKDLKVAARNFQSLH 652

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                E    +      IKR    N N + + T+H +KGLE  VV++         H H 
Sbjct: 653 E--FLEHTEHMRAMNKEIKRLSRNNDNAITLSTIHRSKGLEYNVVYVAGAVEGNLPHDHS 710

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                         +  +  + +  EE  RL+YV +TRA   L 
Sbjct: 711 L-----------------------------EAYRSGESAPLEEERRLMYVAVTRARKDLY 741

Query: 664 ICKHSNTSNEK 674
           I         K
Sbjct: 742 ISVPEKRRGRK 752


>gi|144575418|gb|AAZ53772.2| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 7448]
          Length = 753

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/582 (17%), Positives = 188/582 (32%), Gaps = 130/582 (22%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   +   Y E  K+N ++DF+DL++ T    +K      IR +  ++ + +L+DE 
Sbjct: 179 LDQIKVQVYQKYLEKTKENNIIDFDDLLLYTKIAFEKSPE---IRSRWQRKFDFVLVDEF 235

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDTSL+Q+ +++   +D             L  VGD  Q+IYS+ GA+P  +L  +    
Sbjct: 236 QDTSLVQYLILKIFIKDKT----------RLVVVGDPDQTIYSWRGADPSLILNLEHDFP 285

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       + L  ++RST +IL   + +    +N       +++  +         
Sbjct: 286 --------DLQTVILDKNYRSTQNILDAANNLIENNQNRIKKKLVASSKEKIEIHFEDLA 337

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                             +        I   I  +I        
Sbjct: 338 ----------------------------------NERGAEVEWIYRKIQELI-------- 355

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K  +  +DI +L R       I        + + I    +    L     I++ +   
Sbjct: 356 -TKNKVTYRDIAILARSNFYFKQIETKF----DGHNIPYFRHGASPLVTKKEIREALYFL 410

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF----------- 473
           + I +  D  +F  ++  P        I K+          +++++ K+           
Sbjct: 411 KVIDN-SDPYAFEQIINVPPKKIGIATINKLNELAAQFGLNLHDFLFKYYSGKINFKGKQ 469

Query: 474 -----ANCGISKFQHVIKYI---HELIHIAQFCSP--HDFFTLILG----AKKGRQQFIS 519
                 +    K + +++ I          +   P    F++ +L               
Sbjct: 470 GKIPLGHDNQLKIKVLLERISAAKRFKSQIEEKKPCIFQFYSQVLDSFLKKIDYFDAIKD 529

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                    L E     + N Q +    ++L   L+ Y        + + N++ ++TVH+
Sbjct: 530 AKQASDTRNLLEKYYKIMDNWQKANPE-KKLSDYLD-YAAISHFEQTESQNKINLLTVHS 587

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE   VFLV     VF                                    ++   
Sbjct: 588 SKGLEFEYVFLVGMNQGVFP--------------------------------AQKVLDQN 615

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQRT 680
             S  EE  RL +V +TRA   L I   +   S  +   Q+ 
Sbjct: 616 SASEYEEERRLAFVAVTRAKRVLYITNGYRAPSFARGLPQKF 657


>gi|326798725|ref|YP_004316544.1| UvrD/REP helicase [Sphingobacterium sp. 21]
 gi|326549489|gb|ADZ77874.1| UvrD/REP helicase [Sphingobacterium sp. 21]
          Length = 1114

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 144/952 (15%), Positives = 295/952 (30%), Gaps = 83/952 (8%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ--TQCIEERFSLL 69
            +   +  +L      ++  + K  +  + +   +     +  Q           +    +
Sbjct: 218  TISDLSDELITRFEKEIERLLKIATEIVNSSGVSSDLFLRKSQNLIPKIPSLAPDNLEAI 277

Query: 70   SSF--FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
              F  ++      QKN ++  ++     L   L++  +   +    +   K  ++    L
Sbjct: 278  DKFADYIDNPEKWQKNGVSGAVSDLYNKLNPLLRQILNYKEEHSRTYFLAKAVQANFYYL 337

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILI 182
             L K ++    + + ++ V     LI +  +LLK+         ++I  K+     + L 
Sbjct: 338  RLLKEMSVLLADYRAEHDV----SLISDAQNLLKEINRHQDQNISFIYEKVGNRYKYFLF 393

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDTS  QW   + L  +       + S      VGD KQSIY +   + + +     
Sbjct: 394  DEFQDTSSNQWYNFQPLLVNALASTEGNRSIPHHLIVGDVKQSIYRWRNGDWRIL----- 448

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ-----GLSEDSTTTIRH 297
              Q              L  ++RS  +I+   + +F+                      +
Sbjct: 449  QYQSTRDLGDHHIRFQTLQENYRSLPNIIKFNNFLFTQAPKLLQQIINDKIYTEIGDSLY 508

Query: 298  RSSRIGQVGTVQLWEQVVSQHDS---QCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
             S       T  L +               +    T  F  +    + +         + 
Sbjct: 509  NSWWQASGYTQILTDAYAETVQKIPSDKGEEGGRVTVSFFPVTSSFAKTRGKEIKPAALK 568

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT----RFLKNDYKISVVGNDRF 410
             +  +DTI +   +   QA+ I +LVR   +   I        + L   +K  V+  D  
Sbjct: 569  AL--SDTIINWLTEGRYQARQIGILVRNNTEAREIIEYLLHIQKELDESHKFEVISGDAL 626

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
            +L ++  I+ L+   + +++  ++ S                ++ +  +   +  +    
Sbjct: 627  LLVNNPGIRLLINTLKAMITPVEEASLYRA----NCLLLYQQVYGLNQEDEASIWLNATQ 682

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                  G      VI   +            +    ++                 I  L 
Sbjct: 683  YDIKVWGKILPPIVINNWYVWQQ----HPLTELVESLINGYGI------THDEATIPYLI 732

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             F +            +   +   ++   T     +   N V IMT+H +KGL   VV +
Sbjct: 733  AFRDIIAEFSSQGERGIASFLGYWDEEGKTKALPANEGSNAVEIMTIHKSKGLAFDVVMI 792

Query: 591  VDTGSQVFSH-KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                 ++         +    +  +          S    + +             +   
Sbjct: 793  PFCSWELDGMVNSNFWVDTSGTSYEILRSVPVKYNSMLVKSSLFKAYLEEMLFNYMDALN 852

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV  TRA  +L I        ++        D++            I+ ++ I     
Sbjct: 853  LLYVATTRARKELYISAPDIKEGKES--DSLIADVLRSVLALHSDELGIEYSHGIVYPST 910

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
              ++     P   P++ +E      +        F+           L+    + K K  
Sbjct: 911  TPFKDIKKSP-TLPVKYQEGCIDFWESPPNYNWSFNKYPISELLKEALD----NRKIKKE 965

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLLS 827
            L SL   N    +GL+      +   L          +Y    ++  L    E   LL  
Sbjct: 966  LLSLGEQNAATRQGLL------LHELLSLTTEIAEFPNYLHAMQSEGLITKDELMTLLDE 1019

Query: 828  ITRLLENPMMTTAMSC--DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK- 884
              RL  N  +   +     S +E     +I      ++   R D++ I +    I ++K 
Sbjct: 1020 AIRLRNNEQLAALLDKPYQSLNEQ----RIITKDGSVL---RPDKVLIGEHETIILDFKF 1072

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDS-YPNKSLVCLLIYVSEPKVFII 935
            T    PQ        HIAQ+  Y++ L++  YPN  +   L Y    ++  +
Sbjct: 1073 TGMERPQ--------HIAQVKEYQQNLQEMGYPN--IRTFLFYAFNNRLVEV 1114


>gi|262280779|ref|ZP_06058562.1| ATP-dependent exoDNAse beta subunit [Acinetobacter calcoaceticus
            RUH2202]
 gi|262257679|gb|EEY76414.1| ATP-dependent exoDNAse beta subunit [Acinetobacter calcoaceticus
            RUH2202]
          Length = 1232

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 124/896 (13%), Positives = 264/896 (29%), Gaps = 138/896 (15%)

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
            +++++         ++F+   ++        L   +     +  +      F   I   +
Sbjct: 335  QQIQQLFGVLKNYAEQFDQLHIYLKAY----LCVEVKKRLPQVLQNKGETTFSQQIRTLS 390

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            D LK  +        +      IL+DE QDT+  Q +++ S+                + 
Sbjct: 391  DALKG-EQGQRFAVFVQARYPLILVDEFQDTNQDQDDMLASIWR-----HPQRYQKGCMI 444

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGD KQ+IY F G +    L   +  Q +           +L  + RS AD++ VVD +
Sbjct: 445  MVGDRKQAIYGFRGGDMLTFLNAYKDIQAKH------GCEYKLIHNHRSVADLVEVVDAL 498

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            F    +           +++   R G           V    +  N     W    D   
Sbjct: 499  FQRQIDFGE-------QVQYDPIRAGT------RPHPVLIEHNNHNSHPLRWLMLKDKET 545

Query: 338  QESSASILARRIAYTISNMIGTDTI-----FSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
            +       A+++A+ I +++            + + + +   DI VL R       + + 
Sbjct: 546  E-------AQQVAWKIRDLLNQSHAGQLYFQKDSQTQALNEDDIAVLSRNHDGLDKVQYE 598

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
               L     I V    +  + D    +D+ AL   IL   D+      L S LF      
Sbjct: 599  LERL----GIRVNRPSKRSVFDCTIAQDIGALLTAILHPYDEAKVKRALISRLFAMDLKQ 654

Query: 453  IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
            + ++                            +     +  +         +   L    
Sbjct: 655  LLQLEQ------------------TAEGLSQFMTGFDSIRELWSAQGFLVAWQQCLSQFD 696

Query: 513  GRQQFISRFGNEVID---VLDEFLNFTLRNEQ--NSYSSLQELISELEQYPPTIKRAHS- 566
              Q  ++    +       L        ++ +  +   +L     +  + P         
Sbjct: 697  IWQNLVAAQSKDNERVVVNLRHLTEILSQHSEKYSGAQNLYHWYLKQLRSPLDRDWELER 756

Query: 567  --ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              ++   V++MT+H +KGLE  ++FL+        +           +  D    +    
Sbjct: 757  KLSSEAGVQLMTIHQSKGLEFKIIFLLGADKPFRENNKTLNFSTQDVVQPDSSQMLTQRV 816

Query: 625  SKSRNNIV--SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-------KK 675
                +        +K  ++    E NRL YV +TRAS ++                  K 
Sbjct: 817  VAIADKTYLNEVELKQHEERALAEQNRLWYVALTRASHRVYAVLQDADGKSVSGLAFWKN 876

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
             N+   +    D    ++  + I L    +  E  A  +      +        + Q + 
Sbjct: 877  RNEPFQHHCCTDEMVLEQMPQAIHLAKQTSIIELQAQRFPEQRFYSRGKTSFSYLAQHLK 936

Query: 736  EQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLS-DNQTFNRGLIIHKLLQVI 793
             +     L S   + +     L+  +T++      ++ + +   +    G  +H++ + I
Sbjct: 937  HKVGTDLLASQSNDAVLAEDELDLVNTVEIISAQPIDWIKNNFPRGTLAGNFLHEIFEHI 996

Query: 794  FTLPEHKRKNFITS------------YCTKNAKLWPAKEYKN------LLLSITRLLENP 835
                       I                +K  + +P +E         +   +  +L  P
Sbjct: 997  DFQCSDDWVMEIRRRFKNDYSSLWLDLLSKYKESFPEEEDAENLLYQSVAQWLQDVLRTP 1056

Query: 836  -----MMTTAMSCDSYSEVSVSGKINCPK------------------------KDIIISG 866
                  +         SE      ++                               ++G
Sbjct: 1057 LYQGFRLNQLQPEQHLSEFPFYLALSDRVLAMTRVQQLFAEYGLNMPELLEARSARYLNG 1116

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
             ID +    Q   I +YK+++      ++            ++  Q  +Y   L  
Sbjct: 1117 SIDLVYFDGQRYHIADYKSNYLGEDLADYRSDNIAQSMSLASYWLQAGLYLVALHR 1172


>gi|229051608|ref|ZP_04195078.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
 gi|228721719|gb|EEL73193.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676]
          Length = 714

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 100/557 (17%), Positives = 195/557 (35%), Gaps = 106/557 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE K  N  +DF+D+++ T +LL        +   +  +  HIL+DE QD SL+Q
Sbjct: 236 IYQSYEEWKVDNNQMDFDDILLYTYELLLDD---YHLLELLQNKFLHILVDEYQDISLLQ 292

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +++ L              + +F VGD+ Q++YSF G++PK +L              
Sbjct: 293 QMIVKMLA----------YLQKLIFGVGDDGQTVYSFRGSDPKLILDFPNEFP------- 335

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +I+L +++RS   I+ + ++V    +        +      +              
Sbjct: 336 -GAKVIKLEVNYRSNPYIVGLGNEVIKNNKIQFKKELRAYKVDGPKPI------------ 382

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           ++S  DS  +       A  I  +I +++  +           Q
Sbjct: 383 ----------------YSSPEDSDEE-------AINIVQSIKSVVKGEKR---------Q 410

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVV-GNDRFILTDHLAIKDLMALGRFILSQ 431
            KDI VL R    +  I            I  V   ++    +++ ++ ++   R  L+ 
Sbjct: 411 FKDIAVLYRTHAVSRAIVEQL----VLNDIPYVQYGNKDTFYENMYVRPIIGFLRLALNP 466

Query: 432 EDDLSFVCMLKSPLFNFSEDDIF-------KICTQRHETETVYEYIQKFANCGISKFQHV 484
            D+ +   +    +   S++           +     + +    Y+         + Q +
Sbjct: 467 NDEEAINEICN--VLYISKEKAMSHINRASTLDYIEGKVKPFLYYLTSIPELKKYQLQFI 524

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR---NEQ 541
           I  I  L  +    +P      I     G ++++       + +  E +   L       
Sbjct: 525 IGVIKNLKGL-GRLNPALAIEEIRNGYIGYEKYLQNNKRGSLTIHQELVKEVLDELTASS 583

Query: 542 NSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +  +   +  +++     K+        N + V + T+H++KGLE P VF +     V
Sbjct: 584 KKFKDIASFLKFIDKVILRNKQMEELQKQQNPDAVALHTIHSSKGLEFPTVFFIGVSEGV 643

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             HK   ++      N    I                      + + EE  RL YVG+TR
Sbjct: 644 LPHKSALEVMEDRITNKKEIIM-------------------KLQESLEEERRLAYVGITR 684

Query: 658 ASDQLIICKHSNTSNEK 674
           A  +L I       N+ 
Sbjct: 685 AESELYISSPKVVRNQP 701


>gi|169344401|ref|ZP_02865371.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens C
           str. JGS1495]
 gi|169297474|gb|EDS79582.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens C
           str. JGS1495]
          Length = 664

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/551 (17%), Positives = 178/551 (32%), Gaps = 117/551 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +       YE  K +  +LDF+DL I    LLK+      I       I +IL+DE Q
Sbjct: 149 YDIFDKCYEAYETFKNERGLLDFDDLQIKAVTLLKENPH---ILGYYRNLIKYILVDEFQ 205

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D   +Q E +R +                +F VGDE QSIYSF GA PK ++  +   + 
Sbjct: 206 DCDEVQLEFLRLI-------------NNEVFCVGDEDQSIYSFRGATPKCMINFEENFE- 251

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RS  +I+ V   V    +        +              G
Sbjct: 252 -------GSEKVYLKYNYRSLKNIVEVSKDVIKHNKERYQKEIIAFN---------ENQG 295

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++L +      +                          A  IA  I             
Sbjct: 296 KIELKKPFNESEE--------------------------ANIIALKIEESKRLGN----- 324

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALG 425
                +  D  +L R   ++              KI     D+     +H   +DL+A  
Sbjct: 325 -----KYSDTAILYRTNMESRSFIDAF----IRKKIPFKLLDKEYNFFNHFICRDLIAYL 375

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  +   +   F  ++  P    S+  I+ +   + + E V++ +         + +   
Sbjct: 376 RLSIDSFNKEDFSKIINKPFRYVSKSAIYGVMNSKKK-ENVFDILMNVEGVHPFQMRKF- 433

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--S 543
           + +   I      S +     IL   +   Q+I  + ++     ++ L+     + +   
Sbjct: 434 EELKSDIAYLNKLSLNSAIDFILSDLEY-SQYIREYSSKFKQNQEDLLDIVEEFKSSAME 492

Query: 544 YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + S+   +S +E       K     N + V + T+H  KG++   V +V+   +   HK+
Sbjct: 493 FKSIITFLSHIESVEENLEKLNSKGNIDSVILSTMHGVKGMQFNDVHIVNIVDETIPHKN 552

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YVG+TRA + L
Sbjct: 553 S-------------------------------------MENLEEERRLFYVGITRAINNL 575

Query: 663 IICKHSNTSNE 673
            +    +   +
Sbjct: 576 YLYAPKSVRGK 586


>gi|296271994|ref|YP_003654625.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
 gi|296096169|gb|ADG92119.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
          Length = 684

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 97/573 (16%), Positives = 189/573 (32%), Gaps = 124/573 (21%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                  +   YE    KN ++DF+DL++    +L   +    +  +   +  +I++DE 
Sbjct: 159 IYQQIADVYEKYENYLLKNNLVDFDDLLLLPYKILSNNEA---LAKETSGKYQYIMVDEY 215

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q++++R L            +   L  VGD+ QSIY + GA  K +L      +
Sbjct: 216 QDTNELQYKLLRLLC----------MTHSNLCVVGDDDQSIYGWRGATIKNILNFTEHFE 265

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      +++L  ++RST  IL   +++     +  G     T           + 
Sbjct: 266 NTL--------VVKLEENYRSTDTILDHANQLIEHNRDRLGKRLIGTR---------AKG 308

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
            +V+++                          +    +   R+I   +  ++ +      
Sbjct: 309 DSVRVY--------------------------ESHDENEETRKIILDVKKLLDSG----- 337

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                ++ +DI VL R    +  +        N   ++          +   IKDL+A  
Sbjct: 338 -----VRGRDIAVLFRVNALSRSLEEGF----NKAGLNYKLVGGMKFYERAEIKDLIAYF 388

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQKFANCGISK---- 480
           R I +  D+ SF  ++  P     +  + K+  +     + ++E I +F+   ++     
Sbjct: 389 RIITNSYDNFSFKRIINKPKRGIGKTTVDKLEAKSVELKKPIFEIIDEFSPDELNAIVGK 448

Query: 481 -----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLN 534
                 +  +  I +L       S   F  +       R  F +   G E    +DEF  
Sbjct: 449 KNSRTLKVFLASILDLKD-TLEESKMRFLDIFEDTFDFRASFENLPDGFERQANIDEFYG 507

Query: 535 FTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           +      QN    L   ++E+              +  + +M++H +KGLE   +F++  
Sbjct: 508 YVRDYFIQNPLLELDNFLNEIALGTE----DTELENEAISMMSIHASKGLEYKNLFIIGM 563

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               F                                              EE  RL YV
Sbjct: 564 EEGFFPIVGDGS-------------------------------------DTEEERRLGYV 586

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
             TRA D L      +   + K         + 
Sbjct: 587 AFTRAMDNLTCSFVHSRFYKGKRTSLLKSRFLA 619


>gi|317507957|ref|ZP_07965651.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316253745|gb|EFV13121.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 1070

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 124/950 (13%), Positives = 263/950 (27%), Gaps = 165/950 (17%)

Query: 86   TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
            T    +    ++   K  +       +  +   + ++    L +   +    +E  + + 
Sbjct: 200  TSAAEELERLVRTLPKGPRQRAEPSLELRDAVAVQQARAELLGMVAKV----QERLRSSG 255

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
              DF        +L  +    A +R +       +L+DE QDT   Q  ++R+L      
Sbjct: 256  AADFATQTARAAELAAR---FAQVRAEESGAHRVVLLDEYQDTGHAQRMLLRALFGQ--- 309

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                  +   + AVGD  Q+IY++ GA    +         R          + L  S+R
Sbjct: 310  ---DGDNDVAVTAVGDPHQAIYAWRGASAGNLAAFGDDFGAR--------DSLTLMTSWR 358

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            +   +L + ++  +    A G    ++      +      G V++     +  +      
Sbjct: 359  NPVAVLGLANRTVAPLRRAGG----ASAVPELTARPEAPAGEVRVALFEDAAEE------ 408

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                                       I+  +      ++G         + VLVR+  D
Sbjct: 409  ------------------------RAWIAERLRRAAAEADGTG---SRPSMAVLVRRNAD 441

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
               +            +         L D   + DL+A+   +       + + +L SP 
Sbjct: 442  ALAVADA----LASAGLEAQVVGLGGLLDTPEVSDLLAMLELVADPSSSTAALQVLTSPR 497

Query: 446  FNFSEDDIFKICTQRHE-------------TETVYEYIQKFANCGISKFQHVIKYIHELI 492
            +     D+  +  +  E             +  + + +        ++   +   + +L 
Sbjct: 498  WRIGAADLAALSARAAELGARRPKRSAPKDSAELIDQLAGVLADEGAEQASLGDALADLG 557

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQ-------------------FISRFGNEVIDVLDEFL 533
             +A++         +L  +  R +                   F      +  + L  F 
Sbjct: 558  DLARYGPAGGARLAVLAGEVDRLRAQLDRPLPEFVTLVERTMGFAVEADAQARERLSAFA 617

Query: 534  NFTLRNEQN-----SYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLE 584
            +    + +        +SL  L+  L       +       + +  +V+++TVH AKGLE
Sbjct: 618  SVVAEHAKGVAATGGSTSLSGLVGYLRVAETVERGLPVGEVAPDPRKVQVLTVHAAKGLE 677

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLN---DDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
              VV +      VF     +   +        DD G             ++    +  K+
Sbjct: 678  WDVVAVAHLVKGVFPTGRARSTWVGDLTELPPDDLGPLTSSQDRAELQEMLRAEREAAKE 737

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY------------DMVYDSF 689
               EE  RL YV +TRA   L++  H      +++   + +             M     
Sbjct: 738  VADEEERRLGYVAVTRAKQTLLLSGHWWAEGVERALGPSAFLVEWRDALAEQGGMPDVWA 797

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
             +        L        W A       P               +          P   
Sbjct: 798  ESPAGEAANPLLGEAEGVLWPADPLLGRRPSVERGADLVRAALAAEASSASFAAADPEDR 857

Query: 750  DINEPYI-----------------------------LNPSTIDTKGKTNLESLLSDNQTF 780
            D                                   L     +   +          +  
Sbjct: 858  DAELFAAAEALIAEREAAAERAAAERSGLTVSDVVGLVVDPAEFARERARRGPRPPAREA 917

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
              G   H   + + +    +    +          W + E  +        L++P     
Sbjct: 918  QAGTDFH---EWVRSWYLSEELLGLDELPGAADDGWESAERGHAPRLRQMFLDSPW---- 970

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT 899
                + S V+V          +++ GRID +         + ++KT    P++       
Sbjct: 971  ---AARSPVAVETPFELNLDGVLVRGRIDAVFAQPGGGYVVVDWKTGRADPRKA------ 1021

Query: 900  HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
              AQLS+Y    +       +V  +  V+             +  A +  
Sbjct: 1022 -RAQLSVYRLAWQRLTGATQVVGAVHEVATGVTKTFDDLYTAEELARLLR 1070


>gi|206977850|ref|ZP_03238739.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           H3081.97]
 gi|217958806|ref|YP_002337354.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH187]
 gi|222094953|ref|YP_002529013.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|229138019|ref|ZP_04266617.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST26]
 gi|206743947|gb|EDZ55365.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           H3081.97]
 gi|217067646|gb|ACJ81896.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH187]
 gi|221239011|gb|ACM11721.1| ATP-dependent DNA helicase [Bacillus cereus Q1]
 gi|228645364|gb|EEL01598.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST26]
          Length = 688

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 207/659 (31%), Gaps = 120/659 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 165 ILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L       
Sbjct: 224 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------ 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 275 ----SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 322

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 323 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 365

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 366 ------------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVS 398

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R ++      S   +L +   
Sbjct: 399 R---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIDPFRLESLSNILPTMYI 455

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 456 GRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKK 514

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 515 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQ 574

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 575 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 625

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|188587404|ref|YP_001918949.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352091|gb|ACB86361.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 754

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/543 (17%), Positives = 181/543 (33%), Gaps = 120/543 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y + K+   ++DF+DL++   D L+     +  R ++  E+++IL+DE QDT+++Q
Sbjct: 288 IAQAYHKYKRHYNLMDFDDLLLVLRDNLRDN---STFRKQLSSELSYILVDEFQDTNVVQ 344

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            E++  L           S  R +  VGD+ QSIY+F GA  + +L   +          
Sbjct: 345 NEIVNLL----------GSQSRNITVVGDDFQSIYAFRGANWENILLFPQNYP------- 387

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +I+L  ++RS   IL   +++    +                              
Sbjct: 388 -DAKLIKLEKNYRSHNKILKFANEIVDSAQIGYQKH------------------------ 422

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            + S+      PQ   +           S    A  I   I  +                
Sbjct: 423 -LSSEFHEGTLPQFIKYY----------SQEEEAEAIVSEILALREQG----------FS 461

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            KD+ VL R            +      KI  V        +   +KDL++  R  ++  
Sbjct: 462 YKDMAVLYRAGFHGNY----IQAELLRRKIPYVVYGGIKFMERKHVKDLVSYLRLTVNPI 517

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D +S+   LK  +         +I  +  E +    +              + + +  L 
Sbjct: 518 DAVSWNRFLK-MIPGIGRVRASQIVEEITEQDGRLNFNNFKGTSYYKSLLSLQEVL--LE 574

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
              +  SP +    I+       +      +E  + L+   + +    +     L++ ++
Sbjct: 575 AGKKGISPSNSVARIIEYYYPILEKQEVDASERKNDLEVLYHLSQNYSE-----LEQFLA 629

Query: 553 ELEQYPPTIKRAHS--------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +L   PP  K             + + + I T+H+AKGLE   VF+      +F      
Sbjct: 630 DLSLEPPANKFQQETTPALNEAEDDDSLVISTIHSAKGLEWNTVFIPHLLDGLFPSSKSL 689

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           +   +                                   EE  RL YV +TRA ++L +
Sbjct: 690 RDPFI----------------------------------LEEERRLFYVAITRAKEKLYL 715

Query: 665 CKH 667
              
Sbjct: 716 SMP 718


>gi|293610155|ref|ZP_06692456.1| exonuclease subunit V [Acinetobacter sp. SH024]
 gi|292827387|gb|EFF85751.1| exonuclease subunit V [Acinetobacter sp. SH024]
          Length = 1232

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 129/920 (14%), Positives = 268/920 (29%), Gaps = 138/920 (15%)

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
            L  +   +K               +++++         ++F+   +F        L   +
Sbjct: 311  LADQKVFKKCPAEISDGFYQHPCIQQIQQLFGVLKNYAEQFDQLHIFLKAY----LCVEV 366

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                 +  +      F   I   ++ LK  +        +      IL+DE QDT+  Q 
Sbjct: 367  KKRLPQVLQNKGETTFSQQIRTLSEALKG-EQGQRFAVFVQARYPLILVDEFQDTNQDQD 425

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +++ S+                +  VGD KQ+IY F G +    L   +  Q +      
Sbjct: 426  DMLASIWR-----HPERYQKGCMIMVGDRKQAIYGFRGGDMLTFLNAYKDIQAKH----- 475

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                 +L  + RS AD++ VVD +F    +           +++   R G          
Sbjct: 476  -GREYKLIHNHRSVADLVDVVDALFQRQIDFGE-------EVQYDPIRAGT------RPH 521

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-----FSNGKK 368
             V    +  NP    W    D   +       A+++A+ I +++            + + 
Sbjct: 522  PVLIEQNNHNPHPLRWLMLKDKETE-------AQQVAWKIRDLLNQSHAGQLYFQKDAQT 574

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            +V+   DI VL R            +F      I V    +  + D    +D+ AL   I
Sbjct: 575  QVLNEDDIAVLSRNHDGL----DKVQFELERLGIRVNRPSKRSVFDCTIAQDVGALLTAI 630

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L   D+      L S LF      + ++                            +   
Sbjct: 631  LHPYDEAKVKRALISRLFAMDLKQLLQLEQ------------------TAEGLSQFMTGF 672

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQ--NS 543
              +  +         +   L      Q  +     +       L        ++ +  + 
Sbjct: 673  DTIRELWSAQGFLVAWQQCLIQFDIWQNLVVAQSKDNERVVVNLRHLTEILSQHSEKYSG 732

Query: 544  YSSLQELISELEQYPPTIKRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              +L     +  + P           ++   V++MT+H +KGLE  +VFL+        +
Sbjct: 733  AQNLYHWYLKQLRSPLDRDWELERKLSSEAGVQLMTIHQSKGLEFKIVFLLGADKPFREN 792

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK--HLKKSTQEEYNRLLYVGMTRA 658
                       +  D    +        +    + I+    ++    E NRL YV +TRA
Sbjct: 793  NKTLNFSTQDIVKPDSNQTLTQRVVAIADKTYLNEIELKQHEERALAEQNRLWYVALTRA 852

Query: 659  SDQLIICKHSNTSNE-------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            S ++                  K   +   +    D    ++  + I LT   +  E  A
Sbjct: 853  SHRVYAVLQDIDGKSVSGLAFWKNRAEPFQHRCCTDEMVLEQIPQAIHLTKQTSVIEIQA 912

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNL 770
              +      +        + Q +  +     L S   + +     L+  +T +      +
Sbjct: 913  KRFPEQRFYSRGKTSFSYLAQHLKHKAGTDLLASQSNDAVLAEDELDLINTAEAISAQPI 972

Query: 771  ESLLS-DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS------------YCTKNAKLWP 817
            + + +   +    G  +H++ + I           I                +K  + +P
Sbjct: 973  DWIKNNFPRGTLAGNFLHEIFEHIDFQCSDDWVIEIRRRFKNDYSSLWQDLLSKYNESFP 1032

Query: 818  AKEYKN------LLLSITRLLENP-----MMTTAMSCDSYSEVSVSGKINCPK------- 859
             +E         +   +  +L  P      +         SE      ++          
Sbjct: 1033 EEEDAENLLYQSVAEWLKDILRTPLSQGFRLNQLQQDQYLSEFPFYLALSDRVLAMTRIQ 1092

Query: 860  -----------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---- 898
                                 ++G ID +    Q   I +YK+++      ++       
Sbjct: 1093 QLFAEYGLNMPELLEARSARYLNGSIDLVYFDGQRYHIADYKSNYLGDDLADYRSDSIAQ 1152

Query: 899  -----THIAQLSIYEKILKD 913
                 ++  Q  +Y   L  
Sbjct: 1153 SMSLASYWLQAGLYLVALHR 1172


>gi|330920735|ref|XP_003299127.1| hypothetical protein PTT_10062 [Pyrenophora teres f. teres 0-1]
 gi|311327314|gb|EFQ92774.1| hypothetical protein PTT_10062 [Pyrenophora teres f. teres 0-1]
          Length = 986

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 122/690 (17%), Positives = 207/690 (30%), Gaps = 156/690 (22%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
             + ++ K + + I   D   T K              + + Y+E    + +LD++DL++
Sbjct: 137 HARSRISKLKAKGITADDNRRTAKNVNDNE-----FAMVYSSYQEHLAASNLLDYDDLLM 191

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
              DLLKK              I  +LIDE QDT+ IQ+E++  L +            R
Sbjct: 192 RCVDLLKKSPSCV-------STIQAVLIDEYQDTNNIQYELMSLLAQ----------KTR 234

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD  QSIYSF  AE K +LR +    +          +I L  ++RS+  IL+  
Sbjct: 235 RITIVGDPDQSIYSFRSAEIKNLLRMRTDYPESV--------VINLENNYRSSGCILSSA 286

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             V    E+    +  +T  I  + +                                  
Sbjct: 287 MAVIEQDESRPQKALIATHGIGEQPT---------------------------------- 312

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            L    SA++ AR I   I                ++   D  +LVR    T  I     
Sbjct: 313 -LRHLISANVEARWIVEEIHR-------TKTLTAGLLSFNDYAILVRSSPLTLQIERAL- 363

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  I           D   IK ++   R I   + + +   ++  P     +  + 
Sbjct: 364 ---GQAGIPYRMVAGTKFFDRAEIKIILDYLRVISQPDHNDAVARVINVPSRKVGDVTVK 420

Query: 455 KICTQRH-ETETVYEYIQKFANCGISK-----------FQHVIKYI-----HELIHIAQF 497
            +  +      T+++ +   A                  +  +  I       L   ++ 
Sbjct: 421 ALLEEAELRKVTLWKLVLDVAQGRRKPESKVSTQAQKGIEQFVHVILTSREKLLPAKSED 480

Query: 498 CSPHDFFTLILGAK---KGRQQFISRFGNEVIDVLDEFLNFTLRN--------------- 539
           C        +L         +Q       +    ++E +N   +                
Sbjct: 481 CDLFGLIMHVLNKIAFQSYLKQAHKENWQDRWANVEELINQATQMATAVANGEEISDDAL 540

Query: 540 ------EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVD 592
                 EQ S S+   L   L     +       +  ++V I T+H AKGLE PVVF+  
Sbjct: 541 PEMDGLEQRSDSAADLLSKFLANVTLSSAADQDGSELDQVTISTIHAAKGLEWPVVFMPA 600

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                  H                                       +   Q+E  RLLY
Sbjct: 601 VYDGSIPHS--------------------------------------RAEDQDEERRLLY 622

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VGMTRA   L +      S ++++    +           ER   +    S   D     
Sbjct: 623 VGMTRAQGLLYLSCPVKQSGQEQTTLSRFISDRKIQKLFHERGPDLAFKRSTIPDLARIL 682

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                   +    R    +   D     ++
Sbjct: 683 RRDCPTTADIDAARNLLERPEDDRYPATRE 712


>gi|190149661|ref|YP_001968186.1| exodeoxyribonuclease V subunit beta [Actinobacillus pleuropneumoniae
            serovar 7 str. AP76]
 gi|307260844|ref|ZP_07542530.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
 gi|307262969|ref|ZP_07544591.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
 gi|189914792|gb|ACE61044.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
            serovar 7 str. AP76]
 gi|306869411|gb|EFN01202.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
 gi|306871595|gb|EFN03317.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
          Length = 1202

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 136/1002 (13%), Positives = 284/1002 (28%), Gaps = 152/1002 (15%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-- 58
            L     + L  + +    D          +I++ +   +     T  KKA   +      
Sbjct: 211  LNGELAVHL-AALQHFLADAKRHWSAHGEEISRLIESELAKKYKTGEKKALNRRSYQTRY 269

Query: 59   TQCIEERFSLLSSFFLTQKFTPQ-----KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
             +         ++  L+     Q     +  + ++  + +  L         + +    +
Sbjct: 270  LEKWRASVDEWAASSLSYLPEEQFERFCQEFLNEKAEEGAEPLVHPHFAKNQQILTAYQQ 329

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                K              +     + K  +    F D++   N  L   +  A +  +I
Sbjct: 330  QFANKQKPLL--LYQFLLAVRTKLADYKATHSEKSFNDMLTLLNQAL-NAERGAELAAQI 386

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
              +    +IDE QDT   Q+E+   +            +      +GD KQSIY F GA+
Sbjct: 387  RAQFPFAMIDEFQDTDKEQYEIFHKIFMQETH------TNHGFIMIGDPKQSIYKFRGAD 440

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                L   +          Q      L  ++RS   I++  +++F  PE A+        
Sbjct: 441  IFTYLTASQ----------QAQQKRTLAKNWRSLPPIVSATNRLFEFPEAAENSPFLYQG 490

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H                  S        +          L  +    + A++ AY I
Sbjct: 491  IQFH------------------SVEAKASEAELIGADYVNCYLQAKFDEKLAAKQCAYQI 532

Query: 354  SNMIGTDTIFSNG--------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
               +        G        +    QAKDI +LVR      LI      L      SV 
Sbjct: 533  QQQLKQMEAGEFGLKFTNTTEEINAFQAKDIAILVRSHSQATLIKSALAELGIR---SVF 589

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             +++  +      K+L+ +    L+       +  L + L+  S  +I ++     E + 
Sbjct: 590  LSEKESVYQSETAKELLWVLYACLNPYHQRHLLSALGTTLWGLSATEIHQLKNS--ELQW 647

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
              +  +      I + Q ++  +H+L               +    +   + ++      
Sbjct: 648  DEQVGRFITYQQIWQQQGILPMLHKLFMQ------EGIIERLRANPRDSDRRLTDLL--- 698

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGL 583
               L E L   + + +N  + ++    +L +            +    ++I+T+H +KGL
Sbjct: 699  --HLTELLQNAMPSLENESALVRWYERQLAKTDSTEEHILRLESEEELIKIVTIHGSKGL 756

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            + P+V+L   G +    K                                 +   + +  
Sbjct: 757  QYPIVWLPFIGKKNQGAKASNLAIYRDEQGQAH---------WYFGKPSEQVQALMDREE 807

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS--------------NQRTWYDMVYDSF 689
              E  RLLYV +TRA  QL +       +   +              + +          
Sbjct: 808  LAEDLRLLYVAVTRAESQLNLILPQRFEDGWNAVHYLLSNGEIGLNKSYKAEISTSEYLQ 867

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPEN----------------TPLEREETIKQL 733
                  + ++L   I  D+W    + +                     + L ++      
Sbjct: 868  QKGIDCQAVELDEKIANDKWRPAPFVSETLSAYHFSGQIQQTGLVTSFSALHQQHEWAMQ 927

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKL 789
                    K+F     D ++  IL P T +     N E+          +   G I+H  
Sbjct: 928  HHTGYSMPKVFENAGQDYDQQQILAPETDNLFALDNEETNAYSSYQFPHSTKVGNILHSF 987

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---MMTTAMSCDSY 846
             +          +  +T            +  +     +     +     +         
Sbjct: 988  FEHSDFQQAVDFEQILTICEQLGLDENWHEPLQKWFEKVLATPFSETEFALKDVPITKRL 1047

Query: 847  SEVSVSGKINCPKK--------------------------DIIISGRIDQISISQQNIFI 880
            +E     ++                               +  + G +D I    +  ++
Sbjct: 1048 NEWQFYLRLKNSDGLRKLNQLLKQYSAVSAKLPDLNLPQLEGYLRGFVDCIVQVNEKFYL 1107

Query: 881  FEYKTHHH-------VPQEIEHIPY--THIAQLSIYEKILKD 913
             +YK++           Q +E       +  Q  +Y   L  
Sbjct: 1108 IDYKSNFLGYLAQDYSRQNLEKTIGQYRYDLQYLLYTLALHR 1149


>gi|196228890|ref|ZP_03127756.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
 gi|196227171|gb|EDY21675.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
          Length = 1048

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 123/845 (14%), Positives = 264/845 (31%), Gaps = 73/845 (8%)

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
               A+L +A  ++  Y E +    V+ F D I    +LL+  + +  IR K   +   IL
Sbjct: 247  RRCAALHVAAEISQAYREFRLGRGVMTFSDQIALAAELLRHPEAAQRIRAK---QYRVIL 303

Query: 182  IDEVQDTSLIQWEVIRSLT------EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             DE QDT   Q++V+  +         +   +     P     VGD +QSIY    A+  
Sbjct: 304  -DEAQDTDPTQFDVLLEVARPVEATGPWPSEETHPPLPGHFCMVGDFQQSIYGAR-ADLA 361

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
               R  +   +           +   ++FR     +   + VF                +
Sbjct: 362  HYRRVHQAFLR-----TGAGEEVIFSVTFRLDRAGIEFANAVF--------------PIV 402

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H   R  QV  V L+ +  +          ++          ++     A  +A+ +  
Sbjct: 403  LHGLER--QVPYVALYPRPTAFPGQIVRFDPKAGPEIIAERALKNKEYWEANNLAHWLRE 460

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                       K R    +++ +L  + +  P +    R +    ++    ++R I  D 
Sbjct: 461  -------VGLEKLRASSWREVALLCPRTRWLPPLRAALRSVGLKAQV---QSERSINGDS 510

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
             A     AL   +    +    V +L+  +F  S+ D+               +      
Sbjct: 511  PAYAWFTALATVLAEPRNGFEIVGVLRE-IFGLSDHDLAAFSEGYGVR-----FHLTAPT 564

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                     I  +  L   A+          ++   + R + +S   +E   +  E    
Sbjct: 565  GRGGPVAEKINLLVALREQARSLPLFSAMEEMVRVTQLRDRLLSLPADEYEGLGFELEEL 624

Query: 536  TLRNEQNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              +      +  +L+   +EL+      +    A  + ++I++ H +KG E   V +   
Sbjct: 625  LTKAATAEAAKGTLENFAAELQSEFHAARNVRGALPDAIQIISGHKSKGSEWEAVIIPFF 684

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                 +         +               +   +++  DL   +    Q+E  RLLYV
Sbjct: 685  ARGAKTQS------PVYPRLLRDPRSAATIAAMESSDVDGDLKTAVALQEQQELERLLYV 738

Query: 654  GMTRASDQLIICKHSNT-SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
             +TRA   L++       + +K   +R+    +      +      +L   ++     A 
Sbjct: 739  ALTRAKHTLVLVDDRALFTGKKGLPERSQASRLRCGQGEENAAAFERLPTKLSACTETAE 798

Query: 713  EWSTHH---PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
              +       +   L       + +   +    +F            L  +         
Sbjct: 799  HHAQKAIVRSQEMILPLPTLPAKALKASRERAAVFLKRNPSALAEAALAEADPAAYVAAA 858

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPE--HKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
             ++  + N     G   H  ++V+          + F T             ++  L   
Sbjct: 859  RQASSAPNAGQRYGTWWHNFVEVLDWSAPVASWDRTFETHLAGSPDPDRSHHDWALLRTQ 918

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS--QQNIFIFEYKT 885
            +T   +   +       +++E+     +    +   + G ID            I ++KT
Sbjct: 919  LTSDSDLTRLLAGPGTLAHAEMPF---LWAMSERECLDGIIDLAVYDRQAHRWTILDWKT 975

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
            +   P         ++ QLS Y K   +   +  +   L   +  +     +++L  A+ 
Sbjct: 976  NRVPPS-----RSHYLPQLSAYWKAASEML-HTPVAAGLYITATGQWLPYEESELAGAWD 1029

Query: 946  EISTK 950
             +S  
Sbjct: 1030 ALSRN 1034


>gi|229120851|ref|ZP_04250093.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
 gi|228662511|gb|EEL18109.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201]
          Length = 688

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 107/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|323345276|ref|ZP_08085499.1| ATP-dependent helicase [Prevotella oralis ATCC 33269]
 gi|323093390|gb|EFZ35968.1| ATP-dependent helicase [Prevotella oralis ATCC 33269]
          Length = 1102

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 135/881 (15%), Positives = 280/881 (31%), Gaps = 90/881 (10%)

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS- 126
             L    +T       N + +    +   L   ++      +   +R    ++     A  
Sbjct: 298  ELLKTRVTDALEEPMNWVKKGDRIQGSPLLNLVQSELLPLLLDAERIRPKQLTLYKSADI 357

Query: 127  -------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQE 176
                   L L   + A   E            L+ +T  LL        S +I  KI  +
Sbjct: 358  TLKHLNQLRLLSSIEAKVREMNADANRF----LLSDTQALLSSLIDESDSPFIFEKIGTQ 413

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            ++H++IDE QDTS IQW   + L ++    ++T +       VGD KQSIY +   + + 
Sbjct: 414  LHHVMIDEFQDTSTIQWRNFKVLLDECMSHEDTEN-----LIVGDVKQSIYRWRSGDWRL 468

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +   ++              I  L +++RS A+++   +  F    N +    +    + 
Sbjct: 469  LNDIEKEFPTA----DTSTMIERLDVNYRSEANVVNFNNAFFKAAANWEYRKVEEDNAVE 524

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        QL              +      + + LPQ+     +  R+   +  +
Sbjct: 525  AG----------QLNRAYADVEQKLPAGKPTKGYVHIELLPQKDYHDKMMVRLKEALEEL 574

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
            I      +           I +++R       +            + +V ++ F L   L
Sbjct: 575  IEHHVPLNK----------IAIIIRSNGIIQEVADYFMREMP--DVRLVSDEAFRLDASL 622

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            A+  ++     ++   D L+    L       +   ++   T   + E +   + K  + 
Sbjct: 623  AVNIIIDALHVLMHPNDRLAIAN-LAKAYCKVTSGSVYSESTLIGDREDMTVLLPKDFSN 681

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                                     D    +          +    +E    L  F +  
Sbjct: 682  YTDSLVR--------------LPLRDLVEKL-----YIIFNLGSLQHE-DAYLCSFYDQL 721

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                 ++ S +   +    +   +   A     + +R++T+H +KGLE   V +     Q
Sbjct: 722  NSYISDNVSDIDSFVEYWNETIHSKTIAGDE-IDGIRLITIHKSKGLEFEHVIMPFCDWQ 780

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +     I         ++ P +PI     + R+ I      H       +   LLYV  T
Sbjct: 781  LEKVSTIWCKPTEAPFDELPLVPIDFVAKQMRSTIYEQDYLHEHLQNVVDNLNLLYVAFT 840

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            RA   L +      S  +     T   +V D+      V  I+    I   E+ + E   
Sbjct: 841  RAKCSLQVFGKRGKSGIRTELIETCLPIVTDTLEKCVLVGDIENAEEIVSLEYGSLE--- 897

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
               + +   ++  I + + +Q I  +    +  D+N  +  +  +     +   E   + 
Sbjct: 898  ---DYSQNNKKTNISRNVFKQPIDTENIDIVSFDMNVEFRQSNKSRSFI-ENVEEEEETL 953

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                  G I+H +L  I         + +T    +          K L+  +   L++  
Sbjct: 954  PDYVKIGSILHNVLSNI--RTAADINSALTELEKEGVLYDHNLTQKKLITMLRERLKDKR 1011

Query: 837  MTTAMSCDSYSEVSVSGKINCPKK--DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
            +    S      +     I       D ++  R D++    + + + ++K          
Sbjct: 1012 VEDWFSD--RWTIFNECSIVHLDGSNDRVVEHRPDRVLTDGKEMIVIDFK--------FA 1061

Query: 895  HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                 H AQ+  Y  +L+D    +++   L YV    +  +
Sbjct: 1062 VQREEHHAQVRQYMALLRDM-GYRNVSGYLWYVYSNIISEV 1101


>gi|238026680|ref|YP_002910911.1| exodeoxyribonuclease V subunit beta [Burkholderia glumae BGR1]
 gi|237875874|gb|ACR28207.1| Exodeoxyribonuclease V, beta subunit [Burkholderia glumae BGR1]
          Length = 1249

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 126/1007 (12%), Positives = 272/1007 (27%), Gaps = 137/1007 (13%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L +  G   +      + +   L +     I   +  +  + N    K        +   
Sbjct: 225  LHDTGGADADAVARACHGEAAALWHGGRERIAALLDAAQPSLNQRSHKPEAVADALAAWA 284

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK--SQDEFIKIRDRFNTYK 118
                                    +T+   +K+        +         +       +
Sbjct: 285  AYFGELDAADGTAAPAPLPKPALRLTRGALEKATKKGGTPPEHPFFAAAGALEAALAAAE 344

Query: 119  MFKSTLASLTLAKYLNA---HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
              +       +A +L        E K+   V+ F+DL+ N +  L       W+   + +
Sbjct: 345  QAQRGRWLALVAAWLAEAPARLAEKKRTRRVVSFDDLLANLHHALAAHP---WLADTLRR 401

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                 LIDE QDT  +Q+ +  ++                LF VGD KQ+IYSF  A+  
Sbjct: 402  RYPAALIDEFQDTDPLQFAIFDTIFA----------PAGPLFLVGDPKQAIYSFRAADLH 451

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
              L  +              S   L ++ RST  I+   ++VF+   +A  L +     +
Sbjct: 452  TYLAARAR----------ARSCYTLAVNQRSTPAIVDACNRVFTANPHAFVLDDLDYPAV 501

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTI 353
            R         GT Q    V              W       +  +  +    A+  A  I
Sbjct: 502  R--------AGTRQRAPFVDGTDPRAGAGDFRIWMLPEGDATPAKRDAQWQAAQACAAEI 553

Query: 354  SNMIGTDTIFSNG-KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            + ++      +    +  +   D+ VLV+  +   L+  +       + I  V   +  +
Sbjct: 554  ARLMRGARGGAVRLGEAPLAPSDVAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASV 609

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  + L  +   I +  D       L +  F      ++++                
Sbjct: 610  FATPDAEQLERVLAAIDAPGDLRRLRAALATDWFGLDAAALWRLDQGDAPAGAAAAADAM 669

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                  S+++ + +     +              ++    G ++            L E 
Sbjct: 670  GWVERFSRYRLLWRERGFAVMWRTLARELRIAERLIDGVGGERRVTDVN------HLAEL 723

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLV 591
                   +     +L+ L ++         +    ++ N V+I+TVH +KGLE  VVF  
Sbjct: 724  TQARASAQPGIAPTLRWLAAQRRAGGGEDAQLRLESDRNLVQIVTVHKSKGLEYAVVFCP 783

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                        + +      +D  G  +            +      ++    E  RL+
Sbjct: 784  FLNDGRLPEPREEALPDAREYHDATGAAVLHYGC--DAAAAALAAAQARREQAAERARLV 841

Query: 652  YVGMTRASDQLIIC--KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            YV +TRA  +  +    +    + K++ +     +V    H+ +               W
Sbjct: 842  YVALTRAVYRCYLVAGGYQVAKSTKEARRSVLNWLVAGGGHDFDTWLDTPPEADELAVGW 901

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI------- 762
                      E  P   +        +           +   +   I + S++       
Sbjct: 902  RRLASGPISIEPLPAVPDREPLAAGADADALGGARHAARFLRDAWRIASFSSLTASLARE 961

Query: 763  ------------------------------------DTKGKTNLESLLSDNQTFNRGLII 786
                                                    + + + +++  +    G  +
Sbjct: 962  QEGVAALPEEALRPDHDALAAAVDPLPRLDDGAARGGAPAEPDGDDIVAFPRGAAAGECL 1021

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN---------PMM 837
            H L ++                  +          + L   +TRL+ +           +
Sbjct: 1022 HLLFELSAFDRADSWPEAARRALHERPVEAEPTLAERLPAMMTRLVADVVATELVPGLRL 1081

Query: 838  TTAMSCDSYSEVSV----------------------SGKINCPKKDIIISGRIDQISISQ 875
                     +E++                          +          G ID I    
Sbjct: 1082 DALDPRRRLNEMAFLFPAASLDLLALRELLTAHGYPDVALEPGTLTGFFKGFIDMIVEHD 1141

Query: 876  QNIFIFEYKTHH---------HVPQEIEHIPYTHIAQLSIYEKILKD 913
               +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1142 GRFWIVDWKSNHLGVTPDAYGPAALDAAMADHAYALQALLYTVALHR 1188


>gi|229195526|ref|ZP_04322294.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1293]
 gi|228588066|gb|EEK46116.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1293]
          Length = 688

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 108/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    N    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPNLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|332111484|gb|EGJ11467.1| ATP-dependent exoDNAse beta subunit [Rubrivivax benzoatilyticus JA2]
          Length = 1211

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 132/980 (13%), Positives = 259/980 (26%), Gaps = 132/980 (13%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
              E      + LW      V          +          A   +   +          
Sbjct: 226  ALERAFDEARRLWRAEREVVLAAVHEALPRLPANRYKPDSVATAARCWDEITTAPSALLA 285

Query: 69   LSSFFL-TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             S   L   K         Q    ++P        + D  ++           +      
Sbjct: 286  PSGKLLDKGKAALLGTAKLQPKKDQAPPAPHPFFDAADALLEALAAARQALEVERLRLVR 345

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            TL +         K++  VL F+D++ N ++ L        +   +       LIDE QD
Sbjct: 346  TLLESAPERLRALKRERRVLAFDDMLQNLHERLTG-GACPQLAAALKTRFPAALIDEFQD 404

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T  +QW +  ++                LF +GD KQ+IYSF  A+    L  ++     
Sbjct: 405  TDPLQWAIFEAVYGAGDAP---------LFLIGDPKQAIYSFRNADLNTYLAARQR---- 451

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +   L  + RS+  +L  ++ +F     A          + + +        
Sbjct: 452  ------AAASWTLAQNQRSSEPLLGALNGLFGHQPRAFMQDGLDYQPVGYGAK------- 498

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ----ESSASILARRIAYTISNMIGTDTIF 363
                 +             E W+   D   Q     ++ +  A   A  I+ ++      
Sbjct: 499  ----PRAPFADRGAERAALELWSLPRDDEGQPLAKSAAMAAAAAACAAEIARLVDAGRRG 554

Query: 364  S-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                  R + A DI VLVR  +    +      L     ++ V   +  +      +DL 
Sbjct: 555  EATLAGRGLAAGDIAVLVRSHRQGARMRQALAAL----GVASVELSQASVFASRDAEDLE 610

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L   +L   +       L +    +    I  +         + +    +     ++  
Sbjct: 611  RLLGAVLEPANAARLRAALATEAMGYDAARIAALADDEAALAELVQRFAAYRETWFTRGV 670

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             V   +   +              +L    G ++  +         L E L        +
Sbjct: 671  AV--MLRRWMQD------EGVAARLLSRPDGERRMTNWL------HLAECLQRAAETTTS 716

Query: 543  SYSSLQELISELEQ--YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              +  + L  E          +    ++ N V+I+T+H +KGLE PVVF           
Sbjct: 717  PEALQRWLHDERRAPGGDDEAQLRLESDRNLVQIVTIHKSKGLEYPVVFCPFVFDGHAGG 776

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                             + ++         +        K     E  RLLYV +TRA  
Sbjct: 777  GGSDGEGRELHDTAGQQLWVF-----GDAEVEPGSDDRAKVEQAAETLRLLYVALTRAVH 831

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH-- 718
            +L++         +KS   +   ++     + ++     LT     +E  A   +     
Sbjct: 832  RLVL--VVGPYAVRKSATESARALLNWFVADGQQEPAAWLTGKREPEEVDAAWQAFAALH 889

Query: 719  ---------------PENTPLEREETIKQLMDEQKIPKKL----------FSPIKNDINE 753
                           P        E I  L      P                     + 
Sbjct: 890  PQTVALRTLPDTPGTPLAVQAADPEAIVALPAPAVPPAWWIGSYSSLTQGLRHEGAAQDR 949

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                 P+          + +L   +    G  +H L +        +           + 
Sbjct: 950  DEAQRPARRAAPATLAADDVLRFPRGAVAGECLHALFEHADFADAARWPEAAARALALHP 1009

Query: 814  KLWPAKEYKNLLLSITRLLENPM---------MTTAMSCDSYSEVSVSGK---------- 854
                  +   L   +  LL + +         +         +E+  +            
Sbjct: 1010 PEA-EADSGRLAPMLETLLADVLATRLPGGVVLGDVPPGKRLAELEFTLPSPALAADALA 1068

Query: 855  ------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHH---------HVPQEI 893
                        +        + G ID +   +    + ++K++H           P   
Sbjct: 1069 AVLREAGLPVPALAFGMLRGYLRGFIDLVFEHRGRCHVLDWKSNHLGWTAADYGPEPVAR 1128

Query: 894  EHIPYTHIAQLSIYEKILKD 913
            E   + +  Q  +Y   L  
Sbjct: 1129 EVAAHGYQLQALLYLVALHR 1148


>gi|110802519|ref|YP_698548.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101]
 gi|110683020|gb|ABG86390.1| putative ATP-dependent DNA helicase PcrA [Clostridium perfringens
           SM101]
          Length = 664

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/556 (17%), Positives = 178/556 (32%), Gaps = 117/556 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +       YE  K +  +LDF+DL I    LLK+      I       I +IL+DE Q
Sbjct: 149 YDIFDKCYEAYETFKNERGLLDFDDLQIKAVTLLKENPH---ILGYYRNLIKYILVDEFQ 205

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D   +Q E +R +                +F VGDE QSIYSF GA PK ++  +   + 
Sbjct: 206 DCDEVQLEFLRLI-------------NNEVFCVGDEDQSIYSFRGATPKCMINFEENFE- 251

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RS  +I+ V   V    +        +              G
Sbjct: 252 -------GSEKVYLKYNYRSLKNIVEVSKDVIKHNKERYQKEIIAFN---------ENQG 295

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++L +      +                          A  IA  I             
Sbjct: 296 KIELKKPFNESEE--------------------------ANIIALKIEESKRLGN----- 324

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALG 425
                +  D  +L R   ++              KI     D+     +H   +DL+A  
Sbjct: 325 -----KYSDTAILYRTNMESRSFIDAF----IRKKIPFKLLDKEYNFFNHFICRDLIAYL 375

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  +   +   F  ++  P    S+  I+ +   + + E V++ +         + +   
Sbjct: 376 RLSIDSFNKEDFSKIINKPFRYVSKSAIYGVMNSKKK-ENVFDILMNVEGVHPFQMRKF- 433

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--S 543
           + +   I      S +     IL   +   Q+I  + ++     ++ L+     + +   
Sbjct: 434 EELKSDIAYLNKISLNSAIDFILSDLEY-SQYIREYSSKFKQNQEDLLDIVEEFKSSAME 492

Query: 544 YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + S+   +S +E             N + V + T+H  KG++   V +V+   +   HK+
Sbjct: 493 FKSIITFLSHIESVEENLENLNSKGNIDSVILSTMHGVKGMQFNDVHIVNIVDETIPHKN 552

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                     EE  RL YVG+TRA + L
Sbjct: 553 S-------------------------------------MENLEEERRLFYVGITRAINNL 575

Query: 663 IICKHSNTSNEKKSNQ 678
            +    +   + K   
Sbjct: 576 YLYAPKSVRGKFKDPS 591


>gi|261378815|ref|ZP_05983388.1| exodeoxyribonuclease V, beta subunit [Neisseria cinerea ATCC 14685]
 gi|269144795|gb|EEZ71213.1| exodeoxyribonuclease V, beta subunit [Neisseria cinerea ATCC 14685]
          Length = 1204

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 134/924 (14%), Positives = 274/924 (29%), Gaps = 159/924 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK     E       +        N  +  + T      L L +YLN    E KK  
Sbjct: 309  AGLKKGKTPDEAAFAELQKLADFGRDLNALEEAEETTMIRLQLDLIEYLNRSLAEMKKTR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L        +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPYGETLARAVSENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+           AG       L  ++
Sbjct: 425  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQ----------AAGDARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L   + T +                 +  S+   +   
Sbjct: 470  RSHAALIDSIGALFRLKERPFVLENIAYTDVGAA--------------RTESRLSPERAA 515

Query: 325  QQESWTSYFD--SLPQESSASILARRIAYTISNMIGTDTI-FSNGKKRVIQAKDILVLVR 381
             Q  W    D     +++     A   A  I++ +        N K R +Q+ DI VLVR
Sbjct: 516  VQIRWLHGEDTGKTNKDTLRRRAADYCADEIAHALNEAAGCRLNFKDRPLQSGDIAVLVR 575

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +++   +      ++  V   R  +      + L AL  F L           L
Sbjct: 576  THNEAVMVSAALK----KRQVQSVLLSRESVFASPEARALSALIGFWLEPRRTEPLRFAL 631

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
               +F ++   +             +   +      +   +  +   ++           
Sbjct: 632  TGSIFGYNAQQLHD-----------FNRNEALLLKWMESARTALDNWNQY-------GIF 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPP 559
                            + R     +    + L        +  + ++L + +S+      
Sbjct: 674  AAMQQFSHEHGIETCLLKRQNERSLTNYFQLLELLAAEDAQNRNPAALHKWLSDQISLAE 733

Query: 560  TIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        ++ + V+I+T+H +KGL+ P+V+         +     ++    +   
Sbjct: 734  NNSNDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTKPSDWQILHQSANRT 793

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +               +  D  K        E  RLLYV +TRA +QL I    +T+   
Sbjct: 794  ELLAKAQ---------LSEDEQKQYADEEMAERLRLLYVTLTRAEEQLNIYAAYSTNTAD 844

Query: 675  KSNQRTWYD---------------------MVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                                          M+  ++             +  +D      
Sbjct: 845  NPLAYLIEGSPQDSRETVRQTYDQEKDGITMLKQNWQRLTDNAPSGTNFAFTEDAPPPAV 904

Query: 714  WSTHHPENTPLEREETIK------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            +  +  +                 +      + +   +P   + +    L+P+       
Sbjct: 905  YCGNAGQTAEFAANSIPDRGFRLIRHTSFTALSRHTQTPDGGEEDVQPSLDPAETAESTM 964

Query: 768  TNLESLLSD-------NQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKLWPAK 819
             + +   SD        +  + GL +H++L+      P   +K  I     K    +   
Sbjct: 965  PSEKPSDSDGMTIHNFPKGTHAGLCLHEILEHFPFDRPAAGQKTLIAETLKKYG--FEET 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +   +    + P                                +    + D    
Sbjct: 1023 WLPAVAEMVEACRKTPLTETYSLSDIPPEYRCPEMGFTLFTEDFSLKRLRAWFARDDIQL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIE 894
             EV  + +  ++    +  ++G ID +    +  I + +YK++H             +  
Sbjct: 1083 PEVCRATAETLDFHTVNGFLNGFIDMVCQDPEGNICVIDYKSNHLGTDASAYTQQAMDEA 1142

Query: 895  HIPYTHIAQLSIYEKILKDSYPNK 918
               + +  Q  IY       +  +
Sbjct: 1143 VAHHHYYLQALIYAVAAMRYFKLR 1166


>gi|309810384|ref|ZP_07704218.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
 gi|308435624|gb|EFP59422.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
          Length = 1176

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 136/1076 (12%), Positives = 277/1076 (25%), Gaps = 182/1076 (16%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R G+  +          W   +   S  +  +S               T  + S+ +   
Sbjct: 153  RLGIEPDARMLS-EAAAWQFAHEVASGWDGDMSQVTVKLPSVTAAVLATAGELSEHRRSV 211

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            +         L            + +      L  K K  Q                   
Sbjct: 212  DELRAYYDSLLGSLDAIPFAPRKRSLGDAGKALTAKAKGHQQIL---------------- 255

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                     L   Y+  KK    LDF D I    +L  +      I          +L+D
Sbjct: 256  --------PLIERYQSLKKDRSALDFSDQIAFAAELADRFPAIGAI---ERARYRMVLLD 304

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS  Q      L   F  G+        + AVGD  QSI+ + GA    +   +R 
Sbjct: 305  EFQDTSSAQIAF---LAAVFAAGETQQRPG--VVAVGDPHQSIFGWRGASVTTLSAFRRS 359

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                 ++      +  L  S+R+ A +L   + V + P N       +T   R  +    
Sbjct: 360  FALPGSDLTP---VASLATSWRNDAAVLDAAN-VTAAPLNRASRVPVATLRPRPDAGPGA 415

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                  L E   ++  +Q   ++       ++    +       +    +  +       
Sbjct: 416  LAAARYLTEADEARAVAQWVAERRRPLRSGEAPRTAAVLCRKRSQFVPMLDALHDAGVPA 475

Query: 364  SN----GKKRVIQAKDILVLVRKRKDTPLITFLTRFL------KNDYKISVVGNDRFILT 413
                  G  +  +  D++ ++    D      L R L           I+ +G+    L 
Sbjct: 476  EAVGLGGLLQTPEIVDLVSMLWVVDDPSRGDHLMRLLTSPAMRLGAADIAALGSWAKELH 535

Query: 414  DHLAIKDLMALGRFILS---------------------QEDDLSFVCMLKSPLFNFSEDD 452
                     A                               D            + ++D 
Sbjct: 536  QRHQDDAAAATEERAEGGSAEPASSESDAGEGAPSEPVPGPDGEAARRGARAERDLAQDT 595

Query: 453  IFKICTQRHETETVYEYIQKFANCG-----ISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
              ++       E      +             + +     +  L  +       DF    
Sbjct: 596  RDEVSLVEAIGELPDASWRGRDGEYLCDVARERLRGFHTSVQRLR-LLSGLPLADFVGEA 654

Query: 508  LGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-- 561
                    + ++R G +       LD F +       Q    +L   +  L+        
Sbjct: 655  ERVLGLDIEVLARPGYDPSSARAHLDAFADIAGTFSVQAQRPTLGGFLEWLDAARQEERG 714

Query: 562  --KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK------------------ 601
                A   N + V+++TVH AKGLE  VV +      VF                     
Sbjct: 715  LEMPAIEVNPHAVQVLTVHAAKGLEWDVVVVPGLVEGVFPSLGGSTRAEGEQWQYKPHKA 774

Query: 602  ----HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS----DLIKHLKKSTQEEYNRLLYV 653
                   +        D  G+P         ++ ++    +  +   K    E  RL YV
Sbjct: 775  RGWLSGLQSIPYDLRGDREGLPALAVTGAEDSDELADRFTEFCEQGLKHAVTEERRLAYV 834

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWY--------------DMVYDSFHNDERVKKIK 699
              TRA   +++      ++     + + +              + ++       +V   +
Sbjct: 835  AFTRARSTMLLTAPIWYASGTTPRETSRFLTELLEEPDLGASIERLHWEQMPPTQVDGER 894

Query: 700  LTNSINKD--------EWIAYEWSTHHPENTPLER------------------------- 726
             +N ++ D        + +A + +   P    +                           
Sbjct: 895  PSNPLDADVLTATWPLDAMADQRAHLVPAADQVRALRTRLQNGEALEPAGQLALGLEGTI 954

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT--------KGKTNLESLLSDNQ 778
            E+  +++       ++  + +++D+  P  L+ S +            +           
Sbjct: 955  EDREQEMELLLAERQRERTRLRSDVVLPSHLSASQLVALASDKDLFARRLRRPMPSEPAV 1014

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
               RG   H  ++                   +                +  +L+   + 
Sbjct: 1015 AARRGTAFHAWVER-------HYGAAALVDLDELPGFGDED---VAADEMLPVLQTNFLA 1064

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIP 897
            +  +      V V   +        + GRID +         + ++KT            
Sbjct: 1065 SEWAD--RVPVDVEVALETVVAGYAVRGRIDAVFARDGGGFTVVDWKTGAKPAGPTLRHR 1122

Query: 898  YTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                 QL+ Y              +     Y +  + +  P     +   E+   +
Sbjct: 1123 S---LQLAAYALGYARLRGLDPEDVDAAFFYAATGETYR-PDVASQRDLEELLGSV 1174


>gi|220903357|ref|YP_002478669.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219867656|gb|ACL47991.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 768

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 119/783 (15%), Positives = 242/783 (30%), Gaps = 126/783 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G+S      L +           + +     LS   G          L++       +  
Sbjct: 48  GVSPESMLLLTFTRKAAQEMLHRAGLLLDHGLSGVQGGTFHAFAFSVLRRWKPAWLADRP 107

Query: 66  FSLLSSFFLTQKFT-PQKNIITQEINKKSPD---LKEKLKKSQDEFIKIRD--RFNTYKM 119
           F+++ +  +T      + ++   + +K  P    +   L K++++ + + +  R   + +
Sbjct: 108 FTVMDAADITSAVKHCRDDLKLGKGDKSFPKTQTVVGLLSKARNKELPLDEVLRREAFHL 167

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                +   L       Y   +++  ++D++DL+     LL++ +V+A     + Q  +H
Sbjct: 168 LPHAESLSRLG----EAYNTYRREKGLMDYDDLLFELEALLRQNEVAA---ASLRQRFSH 220

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           IL+DE QDT+L+Q  ++R L                + AVGDE QSIY+F GA  + +L 
Sbjct: 221 ILVDEYQDTNLVQARIVRLLAGPEDAPPG------NVMAVGDEAQSIYAFRGANVRNILD 274

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             ++             +I L  ++RST  +L V + + +    +      +        
Sbjct: 275 FPKLFP--------GARVIRLEENYRSTRPVLEVANSLLAHAAESFRKKLFT-------- 318

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            R      V+L   +                          S +  AR +   I  ++  
Sbjct: 319 -RKEGGEPVRLVTPL--------------------------SDASQARLVVRRIEELL-- 349

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                    R     +I VL R    +  +        N   I          T+   +K
Sbjct: 350 ---------RDHMPHEIAVLFRAGFHSYNLEMAL----NQAGIGFRKYGGLRYTEAAHVK 396

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           D+MA  R +L+  D  +F  +            + K+       +       + A    +
Sbjct: 397 DVMAYARLLLNPLDLPAFARVAAQHS-GIGPKTVEKLYNVIRSGD---AAATEKALARHT 452

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLR 538
            F   +++I++L       +P      +L   + R +             L+E +     
Sbjct: 453 GFLEDVRFINDLRTRP--MAPSSTLAAVLEHYRPRLESLYPEDWPRRQQGLEEIIQMASG 510

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                       +   E+         +    ++ + TVH+AKGLE   V ++D     F
Sbjct: 511 YVHLDLFLADLALESPEE-------DENDAEGKITLSTVHSAKGLEWNAVCIIDLVEDRF 563

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +H                                     +    EE  RL+YV  TRA
Sbjct: 564 PSRHAL----------------------------------ARPEDFEEERRLMYVACTRA 589

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH- 717
              L +   ++  N  +   +      +        V++             A  + +  
Sbjct: 590 RQCLDLYAPASLYNRAERGSQHVNQSPFVRELAPGLVEEWVEGFGGGISRRAAGGFGSPG 649

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
             +  P  R + ++   +          P       P        +          +   
Sbjct: 650 AFQPRPATRPQGMQPPQEHAAYDDCQLPPEHAAGGRPVAAGGPAGNGGYGGYSRPEVPPP 709

Query: 778 QTF 780
              
Sbjct: 710 AAT 712


>gi|313126059|ref|YP_004036329.1| ATP-dependent exonuclase v subunit beta, helicase and exonuclease
            domain-containing [Halogeometricum borinquense DSM 11551]
 gi|312292424|gb|ADQ66884.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
            domain-containing [Halogeometricum borinquense DSM 11551]
          Length = 1152

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 118/885 (13%), Positives = 252/885 (28%), Gaps = 163/885 (18%)

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
             A YE    +  ++DF+ L++   +L++       +  +I    +++  DE QDT  +Q+
Sbjct: 324  YAAYERELDERNLIDFDGLVVEAAELMESP-----VGEEIAARWDYVFCDEFQDTDRLQF 378

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR-VLREKRINQKRATNAG 252
            ++++SL  D             LF VGD+ Q+IY + GA          R     +    
Sbjct: 379  DLVKSLVTDD-----------NLFVVGDDDQAIYEWRGAHVANITDELDRAFAALSDE-- 425

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                   L  +FRS   IL + ++     ++                         +  +
Sbjct: 426  ------PLEENFRSRQPILDLANEAIQKLDHR------------------------ERHK 455

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
             +    + + +    +     D    +      A ++   + N++               
Sbjct: 456  TLKRVDEPEYDGDTIATVELSDEDDADG-----ASQLRTVVQNLLSGAA---ESFDEAYD 507

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              DI +LVRK      +         D  I          T+ + +  + A  + +   E
Sbjct: 508  PGDIALLVRKNDHATPVIEEFE----DAGIPYQVAGDLA-TESVGVGTVTAYLKALARPE 562

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
            D++S+  +L        + D+ K+                       +     K++ EL+
Sbjct: 563  DEVSWNRVLLMRYR-LCDTDLRKLNAGDDPLVDTLRETPLDEFEEPDRVAEARKHVTELL 621

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS--------- 543
             I    S    +  +                +    L +  +   +   ++         
Sbjct: 622  AIRDSASLSHLYRELTDVTN----IEWYLSEQERRDLAQLEDVIEQYGDSAVQPPLTPEF 677

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
              SL+   S  ++   +         + V +MT+H +KGL+ PVV +    +  ++    
Sbjct: 678  IDSLEHYDSLFDESGSSPTSQPDVADDAVNVMTIHKSKGLDFPVVLIPQVTAGEWAPSSR 737

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                +  SL+D                  +   +   +    E  R+ +VG+TRA D L+
Sbjct: 738  TYDALETSLSDGAE---------------AAFAEDFVERDARETRRVFHVGITRAEDVLV 782

Query: 664  ICKHSNTSNEKKSNQ--RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST----- 716
            +   S   +    +    +  +++           ++ L   +           T     
Sbjct: 783  LQGGSEDDDATDVHPVSESVDEILPSRIPWQPERGQLPLWADVQDCLPREAVDWTDTLAT 842

Query: 717  -----------HHPENTPLEREETIKQLMDEQKIPKKLFSPIKND------INEPYILNP 759
                       H  E   +         +    +  +L    + +      + +P   +P
Sbjct: 843  ETVGHVGGTVNHAGEELAVAAARDRVLDLATATLNGELSPRAERETLQVASLTDPSTPSP 902

Query: 760  STIDTKGKTNLESLLSDNQT--------------------------FNRGLIIHKLLQVI 793
            S   +            +                               GL+ H   +  
Sbjct: 903  SLSHSYTSLAAYEECPRSHYLDYVVNAFPDYQETTVRSDSGGGVSQREIGLLFHDTAEQA 962

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-MTTAMSCDSYSEVSVS 852
                  +R ++        +              I R  E  +     +           
Sbjct: 963  AKQGVKRRGDWYEICERLASHRRAEDALTAAKECIDRYFELELPNCEIIDA--------E 1014

Query: 853  GKINCPKKDIIISGRIDQISIS-QQNIFIFEYK-THHHVPQEIEHIPYTHIAQLSIYEKI 910
             +         + G ID +  +    + + +YK T  H   E +        QL IY   
Sbjct: 1015 REFELDIDGHELVGYIDAVYRTPDDGLLVIDYKATERHRDLEDDK-------QLPIYLLA 1067

Query: 911  LKDSYPNKSLVCLLIYVSE----PKVFIIPQNKLNKAFAEISTKI 951
              D Y          YV E     +        L     +++  +
Sbjct: 1068 CCDLYDEPVTRAGYAYVGEIGPKVETRTFSDADLEAVTDDVTESM 1112


>gi|30019376|ref|NP_831007.1| ATP-dependent DNA helicase [Bacillus cereus ATCC 14579]
 gi|229126637|ref|ZP_04255649.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-Cer4]
 gi|29894919|gb|AAP08208.1| ATP-dependent DNA helicase [Bacillus cereus ATCC 14579]
 gi|228656577|gb|EEL12403.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-Cer4]
          Length = 688

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRITETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|312147859|gb|ADQ30518.1| DNA helicase [Borrelia burgdorferi JD1]
          Length = 698

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 93/544 (17%), Positives = 170/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIRPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFDNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS+++I+ + ++V S  +N       +  +   R             
Sbjct: 270 -----KFYLVQNYRSSSNIVGIANEVISKNKNRYEKQITTQNSSNKRMKF---------- 314

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                      + +       I+  I                  
Sbjct: 315 --------------------LVFQSTSDEAEYFSNLLISNDIKT---------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D +SF+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLDKIISSLNDEDVNFNLFCASKKTLGLLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +V   + + +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYDELGKKLFEDNYINLSAFIEDVVIRFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGDFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|229189418|ref|ZP_04316435.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 10876]
 gi|228594009|gb|EEK51811.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 10876]
          Length = 688

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|46143262|ref|ZP_00135577.2| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
            (contains helicase and exonuclease domains)
            [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207854|ref|YP_001053079.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
            L20]
 gi|303252613|ref|ZP_07338776.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|307247370|ref|ZP_07529417.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
 gi|126096646|gb|ABN73474.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
            serovar 5b str. L20]
 gi|302648581|gb|EFL78774.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|306856067|gb|EFM88223.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
          Length = 1202

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 136/999 (13%), Positives = 278/999 (27%), Gaps = 167/999 (16%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ--TQCIEERFSLL 69
            + +    D          +I++ +   +     T  KKA   +       +         
Sbjct: 221  ALQHFLADAKRHWSAHGEEISRLIETELVKKYKTGEKKALNRRSYQTRYLEKWRASVDEW 280

Query: 70   SSFFLTQKFTPQ-----KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
            ++  L+     Q     +  + ++  + +  L         + +    +    K      
Sbjct: 281  AASSLSYLPEEQFERFCQEFLNEKAEEGAEPLVHPHFAKNQQILTAYQQQFANKQKPLL- 339

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                    +     + K  +    F D++   N  LK  +  A +  +I  +    +IDE
Sbjct: 340  -LYQFLLAVRTKLADYKATHSEKSFNDMLTLLNQALKG-ERGAELAAQIRAQFPFAMIDE 397

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT   Q+E+   +            +      +GD KQSIY F GA+    L   +  
Sbjct: 398  FQDTDKEQYEIFHKIFMQETH------TNHGFIMIGDPKQSIYKFRGADIFTYLTASQ-- 449

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                    Q      L  ++RS   I++V +++F  PE A+           H       
Sbjct: 450  --------QAQQKRTLAKNWRSLPPIVSVTNRLFEFPEAAENSPFLYQGIQFH------- 494

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                       S        +          L  +    + A++ AY I   +       
Sbjct: 495  -----------SVEAKASEAELIGADYVNCYLQAKFDEKLAAKQCAYQIQQQLKQMEAGE 543

Query: 365  NG--------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
             G        +    QAKDI +LVR      LI      L      SV  +++  +    
Sbjct: 544  FGLKFTNTTEEINAFQAKDIAILVRSHSQATLIKSALAELGIR---SVFLSEKESVYQSE 600

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
              K+L+ +    L+       +  L + L+  S  +I ++                    
Sbjct: 601  TAKELLWVLYACLNPYHQRHLLSALGTTLWGLSATEIHQLKNS--------------ELQ 646

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDE 531
               +    I Y                   +   +   ++  +   +          L E
Sbjct: 647  WDEQVGRFITYQQIWQQQ----GILPMLHKLFMQEGIIERLRANPRDSDRRLTDLLHLTE 702

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
             L   + + +N  + ++    +L +            +    ++I+T+H +KGL+ P+V+
Sbjct: 703  LLQNAMPSLENESALVRWYERQLAKIDSTEEHILRLESEEELIKIVTIHGSKGLQYPIVW 762

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L   G +    K                                 +   + +    E  R
Sbjct: 763  LPFIGKKNQGAKASNLAIYRDEQG---------LAHWYFGKPSEQVQALMDREELAEDLR 813

Query: 650  LLYVGMTRASDQLIICKHSNTSNE--------------KKSNQRTWYDMVYDSFHNDERV 695
            LLYV +TRA  QL +       +                  + +                
Sbjct: 814  LLYVAVTRAESQLNLILPQRFEDGWNAVHYLLSNGEIGLDKSYKAEISTSEYLQQKGIDC 873

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPEN----------------TPLEREETIKQLMDEQKI 739
            + ++L   I  D+W    + +                     + L ++            
Sbjct: 874  QAVELDEKIANDKWRPAPFVSETLSAYHFSGQIQQTGLVTSFSALHQQHEWAMQHHTGYS 933

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKLLQVIFT 795
              K+F     D ++  +L P T +     N E+          +   G I+H   +    
Sbjct: 934  MPKVFENAGQDYDQQQVLTPETDNLFALDNEETNAYSSYQFPHSTKVGNILHSFFEH-SD 992

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEV 849
              +      I + C +         ++ L     ++L  P       +         +E 
Sbjct: 993  FQQAVDFEQILTICEQLG--LDENWHEPLQKWFEKVLATPFSETEFALKDVPITKRLNEW 1050

Query: 850  SVSGKINCPKK--------------------------DIIISGRIDQISISQQNIFIFEY 883
                ++                               +  + G +D I    +  ++ +Y
Sbjct: 1051 QFYLRLKNSDGLRKLNQLLKQYSAVSAKLPDLNLPQLEGYLRGFVDCIVQVNEKFYLIDY 1110

Query: 884  KTHHH-------VPQEIEHIPY--THIAQLSIYEKILKD 913
            K++           Q +E       +  Q  +Y   L  
Sbjct: 1111 KSNFLGYLAQDYSRQNLEKTIGQYRYDLQYLLYTLALHR 1149


>gi|71893767|ref|YP_279213.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae J]
          Length = 748

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 99/582 (17%), Positives = 189/582 (32%), Gaps = 130/582 (22%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   +   Y E  K+N ++DF+DL++ T    +K      IR +  ++ + +L+DE 
Sbjct: 174 LDQIKVQVYQKYLEKTKENNIIDFDDLLLYTKIAFEKSPE---IRSRWQRKFDFVLVDEF 230

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDTSL+Q+ +++   +D             L  VGD  Q+IYS+ GA+P  +L  ++   
Sbjct: 231 QDTSLVQYLILKIFIKDKT----------RLVVVGDPDQTIYSWRGADPSLILNLEQDFP 280

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       + L  ++RST +IL   + +    +N       +++  +         
Sbjct: 281 --------DLQTVILDKNYRSTQNILDAANNLIENNQNRIKKKLVASSKEKIEIHFEDLA 332

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                             +        I   I  +I        
Sbjct: 333 ----------------------------------NERGAEVEWIYRKIQELI-------- 350

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K  +  +DI +L R       I        + + I    +    L     I++ +   
Sbjct: 351 -TKNKVTYRDIAILARSNFYFKQIETKF----DGHNIPYFRHGASPLVTKKEIREALYFL 405

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF----------- 473
           + I +  D  +F  ++  P        I K+          +++++ K+           
Sbjct: 406 KVIDN-SDPYAFEQIINVPPKKIGIATINKLNELAAQFGLNLHDFLFKYYSGKINFKGKQ 464

Query: 474 -----ANCGISKFQHVIKYI---HELIHIAQFCSP--HDFFTLILG----AKKGRQQFIS 519
                 +    K + +++ I          +   P    F++ +L               
Sbjct: 465 GKIPLGHDNQLKIKVLLERISAAKRFKSQIEEKKPCIFQFYSQVLDSFLKKIDYFDAIKD 524

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                    L E     + N Q +    ++L   L+ Y        + + N++ ++TVH+
Sbjct: 525 AKQASDTRNLLEKYYKIMDNWQKANPE-KKLSDYLD-YAAISHFEQTESQNKINLLTVHS 582

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE   VFLV     VF                                    ++   
Sbjct: 583 SKGLEFEYVFLVGMNQGVFP--------------------------------AQKVLDQN 610

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQRT 680
             S  EE  RL +V +TRA   L I   +   S  +   Q+ 
Sbjct: 611 STSEYEEERRLAFVAVTRAKRVLYITNGYRAPSFARGLPQKF 652


>gi|307249590|ref|ZP_07531577.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
 gi|306858445|gb|EFM90514.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
          Length = 1202

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 140/991 (14%), Positives = 280/991 (28%), Gaps = 161/991 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +  E    + +      Y                              +S +   EE+F 
Sbjct: 235  AHGEEISRLIESELAKKYKTGEKKALNRRSYQTRYLEKWRASVDEWAASSLSYLPEEQFE 294

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 FL +          +      P +     K+Q      + +F      +  L   
Sbjct: 295  RFCQEFLNE----------KAEEGAEPLVHPHFAKNQQILTAYQQQFAN---KQKPLLLY 341

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                 +     + K  +    F D++   N  L   +  A +  +I  +    +IDE QD
Sbjct: 342  QFLLAVRTKLADYKATHSEKSFNDMLTLLNQAL-NAERGAELAAQIRAQFPFAMIDEFQD 400

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T   Q+E+   +            +      +GD KQSIY F GA+    L   +     
Sbjct: 401  TDKEQYEIFHKIFMQETH------TNHGFIMIGDPKQSIYKFRGADIFTYLTASQ----- 449

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 Q      L  ++RS   I++  +++F  PE A+           H          
Sbjct: 450  -----QAQQKRTLAKNWRSLPPIVSATNRLFEFPEAAENSPFLYQGIQFH---------- 494

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG- 366
                    S        +          L  +    + A++ AY I   +        G 
Sbjct: 495  --------SVEAKASEAELIGADYVNCYLQAKFDEKLAAKQCAYQIQQQLKQMEAGEFGL 546

Query: 367  -------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                   +    QAKDI +LVR      LI      L      SV  +++  +      K
Sbjct: 547  KFTNTTEEINAFQAKDIAILVRSHSQATLIKSALAELGIR---SVFLSEKESVYQSETAK 603

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            +L+ +    L+       +  L + L+  S  +I ++     E +   +  +      I 
Sbjct: 604  ELLWVLYACLNPYHQRHLLSALGTTLWGLSATEIHQLKNS--ELQWDEQVGRFITYQQIW 661

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            + Q ++  +H+L               +    +   + ++         L E L   + +
Sbjct: 662  QQQGILPMLHKLFMQ------EGIIERLRANPRDSDRRLTDLL-----HLTELLQNAMPS 710

Query: 540  EQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +N  + ++    +L +            +    ++I+T+H +KGL+ P+V+L   G + 
Sbjct: 711  LENESALVRWYERQLAKIDSTEEHILRLESEEELIKIVTIHGSKGLQYPIVWLPFIGKKN 770

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
               K                                 +   + +    E  RLLYV +TR
Sbjct: 771  QGAKASNLAIYRDEQG---------LAHWYFGKPSEQVQALMDREELAEDLRLLYVAVTR 821

Query: 658  ASDQLIICKHSNTSNE--------------KKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            A  QL +       +                  + +                + ++L   
Sbjct: 822  AESQLNLILPQRFEDGWNAVHYLLSNGEIGLDKSYKAEISTSEYLQQKGIDCQAVELDEK 881

Query: 704  INKDEWIAYEWSTHHPEN----------------TPLEREETIKQLMDEQKIPKKLFSPI 747
            I  D+W    + +                     + L ++              K+F   
Sbjct: 882  IANDKWRPAPFVSETLSAYHFSGQIQQTGLVTSFSALHQQHEWAMQHHTGYSMPKVFENA 941

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
              D ++  +L P T +     N E+          +   G I+H   +      +     
Sbjct: 942  GQDYDQQQVLTPETDNLFALDNEETNAYSSYQFPHSTKVGNILHSFFEH-SDFQQAVDFE 1000

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSEVSVSGKINC 857
             I + C +         ++ L     ++L  P       +         +E     ++  
Sbjct: 1001 QILTICEQLG--LDENWHEPLQKWFEKVLTTPFSETEFALKDVPITKRLNEWQFYLRLKN 1058

Query: 858  PKK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHH--- 888
                                         +  + G +D I    +  ++ +YK++     
Sbjct: 1059 SDGLRKLNQLLKQYSAVSAKLPDLNLPQLEGYLRGFVDCIVQVNEKFYLIDYKSNFLGYL 1118

Query: 889  ----VPQEIEHIPY--THIAQLSIYEKILKD 913
                  Q +E       +  Q  +Y   L  
Sbjct: 1119 AQDYSRQNLEKTIGQYRYDLQYLLYTLALHR 1149


>gi|289640616|ref|ZP_06472788.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509505|gb|EFD30432.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 1162

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 126/993 (12%), Positives = 270/993 (27%), Gaps = 148/993 (14%)

Query: 4    RFGLSLNESYE-LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R G ++        +   + L      D    V   + +G     +    L    +    
Sbjct: 104  RLGAAVGVPLAWTFHAWCYALLRLYRPDPLG-VPPRLLSGPEQDAQLRDLLAGTREVGRP 162

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
                + L+    T+ F  +   +                 ++   + +           +
Sbjct: 163  -RWPAALAGCLTTRGFAEETRAML----------------ARAREVGLDPDALARLARDT 205

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
              A         A Y +A      +D+ +L+     + +  DV A    ++ +    + +
Sbjct: 206  GRADWAAMATFYADYLDALDHVGAIDYPELVQRAALVAESDDVGA----QLRRRYQAVFV 261

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDT   Q  ++R++                L  VGD  QSIY F GAE + +L    
Sbjct: 262  DEYQDTDPAQERLLRAVAG----------GGADLVVVGDPDQSIYGFRGAEVRGLLEFPA 311

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                     G+   ++ L    R     L V  +V          +          ++  
Sbjct: 312  RFP---HVDGRAADVVTLRRCRRLGPVALAVSREVARRIPATGLPAGHLRAHRELVAAGP 368

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN------- 355
                 V+      +   +    +  +     + L   +    +A  +     +       
Sbjct: 369  PVAERVE----ARTYTTTGAQAEGIADLLRREHLGNGTPWERMAVLVRSATRSMLLLRRM 424

Query: 356  MIGTDTIFSNGKKRVIQAKDILV----LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            ++            +  A+D  V    L  +  D P      +         + G D   
Sbjct: 425  LVAGGVPVEVAGDELPPARDGTVAPLLLALRCVDGPPNELTAQAAHTLLTSPLGGADPGA 484

Query: 412  LTD----------------HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            L                   +A       GR      +  +       P    S  ++ +
Sbjct: 485  LRALGRALRAAERVAIAAGAVATARTDGAGRLAGLPAESAAPGGRAGGPAMPASSAELLR 544

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGR 514
                  +   +               + + + +       A   +  D   ++       
Sbjct: 545  QAVVDPDRALLM-----VEERLAGPARRLGELLRSARAVRAAGGTSEDVLWVLWSGSGWP 599

Query: 515  QQFISRFGNEVI---------DVLDEFLNFTLRNEQNSYSS--LQELISELEQY--PPTI 561
            ++                   D +        R+         +  ++ ELEQ      +
Sbjct: 600  RRLERASAAGGAAGRAADRDLDAVVALFAAVGRSSDRHGPGTGIGPVLDELEQQQIAGDV 659

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                 A  + VR++T H +KGLE  VV +       +     +   +     + P +   
Sbjct: 660  LTERPARPDVVRLLTAHRSKGLEWDVVVVCGVQDGEWPDLRTRYSLLEAERLERPELGGV 719

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                              +     +  RL YV +TRA  +L++    +  ++  S  R +
Sbjct: 720  REPVT-------------RAELLADERRLFYVALTRARRRLVVTAVDSAEDQGTSPSRFF 766

Query: 682  YDMVYDSFHNDERVKKIKLTNSI--NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
            +++           +                A   +   PE+TP  R+    +L      
Sbjct: 767  HELAEAERLGVVVTRGRSRPARPLTLPSAVAALRRAAVDPESTPAMRQAAAARLARLAAA 826

Query: 740  PKKLFSPIKN---------------------DINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                  P+                         + P  L+ S++           L    
Sbjct: 827  VDDAGRPLVPAARPGRWWGLVEVTSGEVPVVAPDAPVRLSGSSLSGLVTCPTRWFLEHEA 886

Query: 779  TFN--------RGLIIHKLLQVIFT-------LPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                        G ++H L   + T            R + +  +    A+    ++   
Sbjct: 887  HAQGTSNAEMGFGKVVHALADEVATGRTPPDLGALDTRLDRVWRHLGYEAQWRSEQQRAA 946

Query: 824  LLLSITRLL---ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIF 879
               ++ R L           ++    SEV  S  +    + + + G +D+I +     + 
Sbjct: 947  ARQALARFLVWHAAARGRRLVA----SEVPFSCDLAVGGRTVRLRGFVDRIELDDAGRVH 1002

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            + ++KT    P   +        QL IY+  ++
Sbjct: 1003 VVDFKTGRTAPSGTDVAR---HPQLGIYQLAVR 1032


>gi|42780420|ref|NP_977667.1| ATP-dependent DNA helicase UvrD [Bacillus cereus ATCC 10987]
 gi|42736339|gb|AAS40275.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus ATCC
           10987]
          Length = 688

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 108/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASNYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    N    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPNLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|229113198|ref|ZP_04242693.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
 gi|228670224|gb|EEL25572.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
          Length = 719

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 102/555 (18%), Positives = 197/555 (35%), Gaps = 102/555 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE K  N  +DF+D+++ T  LL +      +   +  +  HIL+DE QD SL+Q
Sbjct: 241 IYHSYEEWKADNNQMDFDDILLYTYQLLLED---YQLLELLQNKFLHILVDEYQDISLLQ 297

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +++ L              + +F VGD+ Q++YSF G++PK +L              
Sbjct: 298 QMIVKMLA----------YPQKLIFGVGDDGQTVYSFRGSDPKLILDFPNEYP------- 340

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +I+L +++RS   I+ + + V    +               R+ +      +    
Sbjct: 341 -GAKVIKLEVNYRSNPYIVGLGNAVIKNNKVQFKKE--------LRAFKADGPKPI---- 387

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           ++S  DS  +       A  I  +I + I ++T          Q
Sbjct: 388 ----------------YSSPADSDEE-------AINIVQSIKSAIKSETR---------Q 415

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVV-GNDRFILTDHLAIKDLMALGRFILSQ 431
            KDI VL R    +  I            I  +   ++    ++  ++ ++   R  L+ 
Sbjct: 416 FKDIAVLYRTHAVSRAIVEQL----VLNDIPYIQYGNKDTFYENTYVRPIIGFLRLALNP 471

Query: 432 EDDLSFVCMLK----SPLFNFSE-DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            D+ +   +      S     S  +    +     + + +  Y+         + Q +I 
Sbjct: 472 TDEEAIKEICNVLYISKEKAISHINRASALDYIDGKVKPLLYYLTSIPELKKYQLQFIIG 531

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR---NEQNS 543
            I  L  +A   +P      I     G ++++       + +  E +   L         
Sbjct: 532 VIKNLKGLA-RLNPDLAVEEIRHGYIGYEKYLQNNKRGSLTIHQELVKEVLDELTASSKK 590

Query: 544 YSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +  +   ++ +++     K+        N + V + T+H++KGLE P VF +     V  
Sbjct: 591 FKDIASFLNFIDKVILRNKQMEELQKQQNPDAVALHTIHSSKGLEFPTVFFIGVSEGVLP 650

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           HK   ++                             +    + + EE  RL YVG+TRA 
Sbjct: 651 HKSALEV-------------------MEDRITNKKEMLMKLQESLEEERRLAYVGITRAE 691

Query: 660 DQLIICKHSNTSNEK 674
            +L I       N+ 
Sbjct: 692 SELFISSPKVVRNQS 706


>gi|119953139|ref|YP_945348.1| DNA helicase II [Borrelia turicatae 91E135]
 gi|119861910|gb|AAX17678.1| DNA helicase II [Borrelia turicatae 91E135]
          Length = 697

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 94/539 (17%), Positives = 176/539 (32%), Gaps = 125/539 (23%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YE+ K KN   DF DLI+    +L+       ++ ++ ++   I +DE QDT+  Q+  +
Sbjct: 171 YEQEKSKNNAFDFADLILKAVLMLRD---CEDVKMRVQKKFKAIFVDEYQDTNYTQFLFL 227

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L                   VGDE QSIYSF GA  + +L  ++I            S
Sbjct: 228 KELYCKDMH----------FMVVGDEDQSIYSFRGARIENILEFEKIFDN--------VS 269

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L  ++RS+  I+ V + V S   N       +   +  +               +  
Sbjct: 270 KYYLVQNYRSSLSIVNVANDVISKNRNRYEKVISTENKMGKK---------------IRF 314

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                   + E ++++                    I N + T                 
Sbjct: 315 FVFRNPAEEAEYFSNFL-------------------IENQLET----------------- 338

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VL R    +             + I           +   IKD+++L R  ++++D +S
Sbjct: 339 AVLYRFNYQSLQFEKSF----FKHNIPHKILGSIRFYEREEIKDVISLLRLFVNKKDKIS 394

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKFQHVIK 486
           F+ ++  P     +    KI    ++    ++ I             A   +  F ++  
Sbjct: 395 FLRVINKPARGIGKTTTNKIIAMLNDRNVNFDLILASRKVADSLKGKAKDSLVAFLNLYD 454

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            + E I    + +  +F   ++        +    G+E    +DE ++  +        S
Sbjct: 455 KLAESIQKDVYVNLSEFIKNVVIRSGFWDYYQKFDGDEKSRNIDELISSGVEYSG----S 510

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            + L+  LE    +      +  +   + ++H  KGLE   V +      +         
Sbjct: 511 FEGLVIFLENSSLSPLIHGDSKSSI-LLSSIHGVKGLEFDRVIISGLEKGLLP------- 562

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                        I+ L     EE  RL YV +TRA  +LI+ 
Sbjct: 563 ---------------------------AEIEELTGERLEEERRLFYVAITRAKFELIVT 594


>gi|72080737|ref|YP_287795.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 7448]
          Length = 748

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 99/582 (17%), Positives = 188/582 (32%), Gaps = 130/582 (22%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   +   Y E  K+N ++DF+DL++ T    +K      IR +  ++ + +L+DE 
Sbjct: 174 LDQIKVQVYQKYLEKTKENNIIDFDDLLLYTKIAFEKSPE---IRSRWQRKFDFVLVDEF 230

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDTSL+Q+ +++   +D             L  VGD  Q+IYS+ GA+P  +L  +    
Sbjct: 231 QDTSLVQYLILKIFIKDKT----------RLVVVGDPDQTIYSWRGADPSLILNLEHDFP 280

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       + L  ++RST +IL   + +    +N       +++  +         
Sbjct: 281 --------DLQTVILDKNYRSTQNILDAANNLIENNQNRIKKKLVASSKEKIEIHFEDLA 332

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                             +        I   I  +I        
Sbjct: 333 ----------------------------------NERGAEVEWIYRKIQELI-------- 350

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K  +  +DI +L R       I        + + I    +    L     I++ +   
Sbjct: 351 -TKNKVTYRDIAILARSNFYFKQIETKF----DGHNIPYFRHGASPLVTKKEIREALYFL 405

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKF----------- 473
           + I +  D  +F  ++  P        I K+          +++++ K+           
Sbjct: 406 KVIDN-SDPYAFEQIINVPPKKIGIATINKLNELAAQFGLNLHDFLFKYYSGKINFKGKQ 464

Query: 474 -----ANCGISKFQHVIKYI---HELIHIAQFCSP--HDFFTLILG----AKKGRQQFIS 519
                 +    K + +++ I          +   P    F++ +L               
Sbjct: 465 GKIPLGHDNQLKIKVLLERISAAKRFKSQIEEKKPCIFQFYSQVLDSFLKKIDYFDAIKD 524

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                    L E     + N Q +    ++L   L+ Y        + + N++ ++TVH+
Sbjct: 525 AKQASDTRNLLEKYYKIMDNWQKANPE-KKLSDYLD-YAAISHFEQTESQNKINLLTVHS 582

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE   VFLV     VF                                    ++   
Sbjct: 583 SKGLEFEYVFLVGMNQGVFP--------------------------------AQKVLDQN 610

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQRT 680
             S  EE  RL +V +TRA   L I   +   S  +   Q+ 
Sbjct: 611 SASEYEEERRLAFVAVTRAKRVLYITNGYRAPSFARGLPQKF 652


>gi|307245198|ref|ZP_07527289.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|307254145|ref|ZP_07535990.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|306853842|gb|EFM86056.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|306862845|gb|EFM94794.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
          Length = 1202

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 136/1002 (13%), Positives = 282/1002 (28%), Gaps = 152/1002 (15%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-- 58
            L     + L  + +    D          +I++ +   +     T  KKA   +      
Sbjct: 211  LNGELAVHL-AALQHFLADAKRHWSAHGEEISRLIESELAKKYKTGEKKALNRRSYQTRY 269

Query: 59   TQCIEERFSLLSSFFLTQKFTPQ-----KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
             +         ++  L+     Q     +  + ++  + +  L         + +    +
Sbjct: 270  LEKWRASVDEWAASSLSYLPEEQFERFCQEFLNEKAEEGAEPLVHPHFAKNQQILTAYQQ 329

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                K              +     + K  +    F D++   N  L   +  A +  +I
Sbjct: 330  QFANKQKPLL--LYQFLLAVRTKLADYKATHSEKSFNDMLTLLNQAL-NAERGAELAAQI 386

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
              +    +IDE QDT   Q+E+   +                   +GD KQSIY F GA+
Sbjct: 387  RAQFPFAMIDEFQDTDKEQYEIFHKIFMQETHM------NHGFIMIGDPKQSIYKFRGAD 440

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                L   +          Q      L  ++RS   I++  +++F  PE A+        
Sbjct: 441  IFTYLTASQ----------QAQQKRTLAKNWRSLPPIVSATNRLFEFPEAAENSPFLYQG 490

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H                  S        +          L  +    + A++ AY I
Sbjct: 491  IQFH------------------SVEAKASEAELIGADYVNCYLQAKFDEKLAAKQCAYQI 532

Query: 354  SNMIGTDTIFSNG--------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
               +        G        +    QAKDI +LVR      LI      L      SV 
Sbjct: 533  QQQLKQMEAGEFGLKFTNTTEEINAFQAKDIAILVRSHSQATLIKSALAELGIR---SVF 589

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             +++  +      K+L+ +    L+       +  L + L+  S  +I ++     E + 
Sbjct: 590  LSEKESVYQSETAKELLWVLYACLNPYHQRHLLSALGTTLWGLSATEIHQLKNS--ELQW 647

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
              +  +      I + Q ++  +H+L               +    +   + ++      
Sbjct: 648  DEQVGRFITYQQIWQQQGILPMLHKLFMQ------EGIIERLRANPRDSDRRLTDLL--- 698

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGL 583
               L E L   + + +N  + ++    +L +            +    ++I+T+H AKGL
Sbjct: 699  --HLTELLQNAMPSLENESALVRWYERQLAKIDSTEEHILRLESEEELIKIVTIHGAKGL 756

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            + P+V+L   G +    K                                 +   + +  
Sbjct: 757  QYPIVWLPFIGKKNQGAKASNLAIYRDEQGQAH---------WYFGKPSEQVQALMDREE 807

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNE--------------KKSNQRTWYDMVYDSF 689
              E  RLLYV +TRA  QL +       +                  + +          
Sbjct: 808  LAEDLRLLYVAVTRAESQLNLILPQRFEDGWNAVHYLLSNGEIGLDKSYKAEISTSEYLQ 867

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPEN----------------TPLEREETIKQL 733
                  + ++L   I  D+W    + +                     + L ++      
Sbjct: 868  QKGIDCQAVELDEKIANDKWRPAPFVSETLSAYHFSGQIQQTGLVTSFSALHQQHEWAMQ 927

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKL 789
                    K+F     D ++  +L P T +     N E+          +   G I+H  
Sbjct: 928  HHTGYSMPKVFENAGQDYDQQQVLTPETDNLFALDNEETNAYSSYQFPHSTKVGNILHSF 987

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---MMTTAMSCDSY 846
             +          +  +T            +  +     +     +     +         
Sbjct: 988  FEHSDFQQAVDFEQILTICEQLGLDENWHEPLQKWFEKVLATPFSETEFALKDVPITKRL 1047

Query: 847  SEVSVSGKINCPKK--------------------------DIIISGRIDQISISQQNIFI 880
            +E     ++                               +  + G +D I    +  ++
Sbjct: 1048 NEWQFYLRLKNSDGLRKLNQLLKQYSAVSAKLPDLNLPQLEGYLRGFVDCIVQVNEKFYL 1107

Query: 881  FEYKTHHH-------VPQEIEHIPY--THIAQLSIYEKILKD 913
             +YK++           Q +E       +  Q  +Y   L  
Sbjct: 1108 IDYKSNFLGYLAQDYSRQNLEKTIGQYRYDLQYLLYTLALHR 1149


>gi|317496982|ref|ZP_07955312.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895994|gb|EFV18146.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 620

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 112/613 (18%), Positives = 194/613 (31%), Gaps = 135/613 (22%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-------TLAKYLNAHYEEAK 141
           I +   D + ++    D   +I    +  K     LA          + K +   YEE  
Sbjct: 113 IREIITDHELEIDDEADFMRQIIQEISLVKGQMIPLAYYHSGCCGDEVFKEIYRAYEEKL 172

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            +N  +DF+D+++ T +LLK+      IR    Q+  +ILIDE QD + IQ+E+++ L  
Sbjct: 173 HENRWIDFDDILVYTYELLKE---REDIRKAWQQKFPYILIDEFQDINKIQYEIVKMLAG 229

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +           + LF VGD+ QSIY F GA P+ +L   +  +            + L 
Sbjct: 230 E----------TKNLFIVGDDDQSIYKFRGARPELMLNFPKDFEN--------TRQVILN 271

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++R   +I+ V + + S           +         R      V++        +++
Sbjct: 272 RNYRCGEEIVQVAEDIISYNTKRFEKKMQA---------REDAASMVEVRTFKDHYEENK 322

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                                      I YTI   +   T              I +L R
Sbjct: 323 --------------------------HIIYTIKEEMAKKTPL----------SQIAILYR 346

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
             +               Y I     D    L DH   K+++      +      +F+ +
Sbjct: 347 TNQGPR----QLIAALMAYNIPFYMQDAVPNLFDHWISKNIIDYMHLAMGDRKRSTFLRV 402

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           +  P    S + + +      +                      ++   E + I +  +P
Sbjct: 403 MNRPKRYISREYLTESQVSFDDLL--------EKVKDKPWLYEYVEDFKEDLRIMKNMTP 454

Query: 501 HDFFTLILGAKKG------RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                 I  +           +F      E   VL+E        +     + +     +
Sbjct: 455 LMAINYIRKSVGYNAYLAEYARFRKIQEEEFTQVLEELQESAKGYD-----TYEAWFDHI 509

Query: 555 EQYPPTIKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           ++Y   + R           V + T+H+ KGLE   VFL D    V  H           
Sbjct: 510 KEYTEELNRQSKENQKEKEGVVVSTMHSTKGLEFERVFLPDVNEDVIPH----------- 558

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                    K +K+   EE  RL YVG+TRA   L I       
Sbjct: 559 ------------------------KKSMKEEDVEEERRLFYVGVTRAKKYLHILSVKKLY 594

Query: 672 NEKKSNQRTWYDM 684
           N+     R   ++
Sbjct: 595 NKDSRPSRFVEEL 607


>gi|327188053|gb|EGE55281.1| uvrD/REP helicase [Rhizobium etli CNPAF512]
          Length = 1052

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 148/943 (15%), Positives = 280/943 (29%), Gaps = 107/943 (11%)

Query: 3    NRFGLSLNESYELIYK-------DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ 55
            ++   S   S E           D   L     + +     +     + T     +T++ 
Sbjct: 166  DQLASSAQRSIEAFLACFPPPAADAADLDAALANALKDAFEMRPAIVSSTGADSVETIRA 225

Query: 56   ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
            A +     E  S  +   LT+     K   T++    +  L   +  +       R RF 
Sbjct: 226  AHERILRGETLSWSTWARLTK----VKCAPTKDGQPYNQALIHLIAAAGRHSEHPRLRFE 281

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
              +    T      A      Y++ K +  +LDF D      ++LK   ++A    ++ +
Sbjct: 282  CEQFITETFHC---AAEALTAYQDWKAERGLLDFTDQEALALEILKTPHLAA----RLKE 334

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             ++ + +DE QD+S +Q  V   L E                 VGD KQ+IY F GA+ +
Sbjct: 335  RVSRVFVDEFQDSSPLQLAVFTLLGELVDES----------TWVGDPKQAIYGFRGADTE 384

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                            G+      L  S+RS   ++ + + +F+      GL        
Sbjct: 385  LTQ------AAFLGAGGKPEDNPVLSKSWRSRKSLVDLFNAMFTPVFERMGLPAAKHAFS 438

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                S  G       W  ++ + D Q                    A  LA  I   ++ 
Sbjct: 439  DAARSDAGFDKPSAGWWWLMGKVDEQ--------------------AQALAEGIRQCLAE 478

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                         R I   DI +L R   D            +   + V   +R  L   
Sbjct: 479  ADNWLVEDDKHDHRPITPGDIAILCRSNTDVGRFALAL----SRAGLPVA-VERSGLART 533

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
              ++ ++A  R +    D L+   + +                       +       A+
Sbjct: 534  PHVEFVLAACRRVADATDRLALAELAR------------FFADDAGSNAWLQAATSDDAD 581

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLN 534
              +     +   +  L       +P +    +L          S        D L+    
Sbjct: 582  AALRAAVPISDALDRLAGQLLNFTPAELVDAVLALPALLSHIESWGDTAMRFDDLEALRG 641

Query: 535  FTLRNEQN-----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            F+   E+      S ++LQ L+  L       KR  S   + +++MT H +KGLE P+  
Sbjct: 642  FSRAYEEECAASGSPATLQGLL--LALDGAEPKRPPSLASDAIQVMTYHGSKGLEWPMTI 699

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV-------------SDLI 636
            L     +  +            L+    +     +                     S+  
Sbjct: 700  LTGLAWESKARLFEPVAETTGELDWRNPLAERWIRFWPWPYGQSGKGGTIDVEVANSETG 759

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            +   +   EE  RLLYVG TRA D LI    +            W  ++         V 
Sbjct: 760  RRALQRAVEEDTRLLYVGATRARDYLIFAPPAK-------GPLNWLSLLNAPEAAAHVVP 812

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                 N +                +  L     +   +  +    ++  P+    +E   
Sbjct: 813  PQNDDNQLGVGNQNFTVNVKALATSGELTERGRLPTYVRARTTEPQVRPPLFLKPSEAVG 872

Query: 757  LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTKNAKL 815
             +   ++         +         G  +H ++          +R    +S  T+   +
Sbjct: 873  GSWKVVERVDLGGRLPIHGIADIAALGEALHSIIGYDDPDRDRSQRLADASSILTRWNVI 932

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
                +   +    +  L              +EV V+        D ++ GRID +  + 
Sbjct: 933  GFKADDALI---ASDRLATWRRGRWPVTRCIAEVPVTSPAA----DQLLKGRIDMLVETG 985

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             +  I ++K+     +  E     H  QL+ Y   ++     +
Sbjct: 986  IDFAIIDHKSFPGRFELWEERAVGHAPQLAAYAGAVESITGRR 1028


>gi|322514244|ref|ZP_08067305.1| exodeoxyribonuclease V beta subunit [Actinobacillus ureae ATCC 25976]
 gi|322119856|gb|EFX91870.1| exodeoxyribonuclease V beta subunit [Actinobacillus ureae ATCC 25976]
          Length = 1202

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 140/988 (14%), Positives = 281/988 (28%), Gaps = 153/988 (15%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            L+  E    + +      Y                              +S +   EE+F
Sbjct: 234  LAHGEEISRLIESELAKKYKTGEKKALNRRSYQTRYLEKWRAFVDEWAASSLSYLPEEQF 293

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                  FL +          +      P +     K+Q      + +F      +  L  
Sbjct: 294  ERFCQDFLNE----------KAEEGVEPLVHPHFAKNQQILTAYQQQFAN---KQKPLLL 340

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                  +     + K  +    F D++   N  LK  +  A +  +I  +    +IDE Q
Sbjct: 341  YQFLLAVRTKLADYKATHSEKSFNDMLTLLNQALKG-ERGAALAAQIRAQFPFAMIDEFQ 399

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT   Q+E+   +            +      +GD KQSIY F GA+    L   +    
Sbjct: 400  DTDKEQYEIFHKIF------MQEAHTNHGFIMIGDPKQSIYKFRGADIFTYLTASQ---- 449

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                  Q      L  ++RS   I++  +++F  PE A+       +   H         
Sbjct: 450  ------QAQQKRTLAKNWRSLPPIVSATNRLFEFPEAAENSPFLYQSIQFH--------- 494

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-- 364
                        +++                ++ +A   A +I   +  M   +      
Sbjct: 495  -----SVEAKASEAELIGSDYVNCYLQAKFDEKLAAKQCAYQIQQQLKQMEAGEFGLKFA 549

Query: 365  --NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                +    QAKDI +LVR      LI      L      SV  +++  +      K+L+
Sbjct: 550  NTTEEINAFQAKDIAILVRSHSQATLIKSALAELGIR---SVFLSEKESVYQSETGKELL 606

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             +    L+       +  L + L+  S  +I ++     + +   E    +        Q
Sbjct: 607  WVLYACLNPYHQRHLLSALGTTLWGLSATEIHQLKNSELQWDQQVERFIAYQQIWQQ--Q 664

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             ++  +H+L               +        + ++         L E L   + + +N
Sbjct: 665  GILPMLHKLFMQ------EGIIERLRANPHDSDRRLTDLL-----HLTELLQNAMPSLEN 713

Query: 543  SYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              + ++    +L +            +    ++I+T+H +KGL+ P+V+L   G +   +
Sbjct: 714  ESALVRWYERQLAKIDSTEEHILRLESEEELIKIVTIHGSKGLQYPIVWLPFIGKKNQGY 773

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            K                                ++   + +    E  RLLYV +TRA  
Sbjct: 774  KASNLAIYRDEQGQA---------HWYFGKPSEEIQVLMDREELAEDLRLLYVAVTRAES 824

Query: 661  QLIICKHSNTSN--------------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
            QL +       +                  + +                + ++L   I  
Sbjct: 825  QLNLILPQRFEDGWNAVHYLLSNGEIGLDKSYKAETSTPDYLQRKGIGCQAVELDEKIVN 884

Query: 707  DEWIAYEWSTHHPEN----------------TPLEREETIKQLMDEQKIPKKLFSPIKND 750
            DEW    + +                     + L ++         +    K F     D
Sbjct: 885  DEWRPAPFVSEALSACHFSGQIQQTGLVTSFSALHQQHEWAMQHHTEYSMLKAFENAGQD 944

Query: 751  INEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
             ++  +L P T +     N E+          +   G I+H   +      +      I 
Sbjct: 945  YDQQQVLAPETDNLFALDNEETNAYSSYQFPHSTKVGNILHSFFEY-NDFQQAVDFEQIL 1003

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS------CDSYSEVSVSGKINCPKK 860
            + C +         ++ L     ++L  P      +          +E     ++     
Sbjct: 1004 TICEQLG--LDENWHEPLQKWFEKVLTTPFSEAEFALKDVPMTKRLNEWQFYLRLKNSDG 1061

Query: 861  --------------------------DIIISGRIDQISISQQNIFIFEYKTHHH------ 888
                                      +  I G +D I       ++ +YK++        
Sbjct: 1062 LRKLNQLLKQYSAVSAKLPELNLPQLEGYIRGFVDCIVQMHGKFYLIDYKSNFLGYLAQD 1121

Query: 889  -VPQEIEHIPY--THIAQLSIYEKILKD 913
               Q +E       +  Q  +Y   L  
Sbjct: 1122 YSRQNLEKTIGQYRYDLQYLLYTLALHR 1149


>gi|52144107|ref|YP_082721.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
 gi|51977576|gb|AAU19126.1| ATP-dependent DNA helicase [Bacillus cereus E33L]
          Length = 688

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 206/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+ +++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYGIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFVDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|325203871|gb|ADY99324.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
            M01-240355]
          Length = 1204

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 129/940 (13%), Positives = 269/940 (28%), Gaps = 164/940 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L +YLN    E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +   ++R              S+   +   
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAE------------SRLSPKRPA 515

Query: 325  QQESWTSYFDSL--PQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVR 381
             Q  W    D+    ++      A   A  I+  +        N K   +Q+ DI VLVR
Sbjct: 516  VQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVR 575

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +++   +      ++  V   R  +        L AL  F L      +   +L
Sbjct: 576  THNEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVL 631

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +F ++   +        E     E                   +             
Sbjct: 632  TSSIFGYNAQQLHDFNQNESEILHWAE--------------SARTALDNW----NQYGIF 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPP 559
                          + +SR     +    + L        +  + ++L + + +      
Sbjct: 674  AAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAG 733

Query: 560  TIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        ++ + V+I+T+H +KGL+ P+V+         +     ++    +   
Sbjct: 734  NNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRT 793

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +               +  D  K        E  RLLYV +TRA +QL I    +T+   
Sbjct: 794  ELLAKAQ---------LSEDEQKQHADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTAD 844

Query: 675  KSNQRTWYDM---------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                     +            +   D      +    +  +     +++       P  
Sbjct: 845  NPLAYLIEGLPQDSRETVRCAYACEKDGIAMLKRNWQRLTDNAPSGTDFAFTEDVPPPAV 904

Query: 726  REETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILN 758
                  Q  +                                ++   P  +         
Sbjct: 905  YCGNAGQTAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAM 964

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--FITSYCTKNAKLW 816
            PS  +T   ++  S+ +  +    GL +H++L+         R+             +  
Sbjct: 965  PS--ETPTASDGISIHNFPKGTQAGLCLHEILEDFKFGQAAARQETLIADKLKKYGFEEI 1022

Query: 817  PAKEYKNLLLSITRL----------------------------LENPMMTTAMSCDS--Y 846
                   +  +  +                                  +    + D    
Sbjct: 1023 WLPAVAEMAEACQKTPLTGAYGLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDVRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIE 894
             EV  + +  ++    +  ++G ID +       I + +YK++H             +  
Sbjct: 1083 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEA 1142

Query: 895  HIPYTHIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
               + +  Q  IY       +  +     ++    +++  
Sbjct: 1143 VTHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|150401988|ref|YP_001329282.1| UvrD/REP helicase [Methanococcus maripaludis C7]
 gi|159906221|ref|YP_001549883.1| UvrD/REP helicase [Methanococcus maripaludis C6]
 gi|150033018|gb|ABR65131.1| UvrD/REP helicase [Methanococcus maripaludis C7]
 gi|159887714|gb|ABX02651.1| UvrD/REP helicase [Methanococcus maripaludis C6]
          Length = 946

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 143/860 (16%), Positives = 265/860 (30%), Gaps = 165/860 (19%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIR 170
              TY   K +L +  L      +YE    K     LDF  L      +L   + +    
Sbjct: 165 ALKTYYSGKRSLKTEELLTESYEYYEAELDKTDPKKLDFAMLQKQFYHMLLNNEDA---L 221

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             + +  ++I +DE QDT+ IQ  +IR + E  F           +  VGDE QSIY F 
Sbjct: 222 NSVREMFDYIFVDEYQDTNPIQDAIIRLIAEPKF----------NITVVGDEDQSIYGFR 271

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  +     ++  ++ +     K  +I+L  +FRS  +I+   DK              
Sbjct: 272 GASVEN---FRQFLERYSGPEKIKAHMIKLEENFRSPEEIVDAFDKFMG----------- 317

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                 HR+                   + +   +   ++     + +      +  +IA
Sbjct: 318 -----PHRTF------------------EKKIISKNGHYSDPVLIVSESPEEESI--KIA 352

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  +I          K  +   DI VL +                 +  I  V     
Sbjct: 353 EWIEKLI---------TKHNVDYGDIAVLFKS---VRNHANELVDELMERNIPYVVYGDS 400

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVC-----------MLKSPLFNFSEDDIFKICTQ 459
            L D   I+ ++     I   E +                +L S L N  E  + K+  +
Sbjct: 401 SLIDQPEIRSVIHAMACINEYELNEKVSRNRKLMSLLDYDILGSDLLNLDEKTVEKLDYR 460

Query: 460 RHETETVYEYIQKFANCGISKFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               +    Y  +         + +  +  I  + +        D F  ++ A    ++ 
Sbjct: 461 GEPHKFCDVYNYEGLKNQGIATKDIDTLINIKNIRNKDVKKPQLDIFYELMDATGYLRRL 520

Query: 518 ISRFGNEVI-----------DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                +E               L +F     + ++N+ S+  +    L    P  K   +
Sbjct: 521 FEASKDEADKYNAEKAELQLKNLAKFTTILEKFKKNTGSNSFKSFIYLLTKIPDNKLEDA 580

Query: 567 ---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + V+IMT+H AKGLE PVV L     + +  +   ++  +P             
Sbjct: 581 ASPEGQDVVKIMTIHQAKGLEFPVVVLGGVTERRYGARADDRLVNIPK------------ 628

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                      ++        EE  R+ YVGM+RA   L I      + +          
Sbjct: 629 ---------QFMMNKHDVDFDEEVRRVFYVGMSRAQKLLTISAIDGRNRKMSK------- 672

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                               I   ++I+    T              K  M    +   +
Sbjct: 673 ----------------FIGEIGDYKFISPSAFTATFGEDDHYVPVDEKIRMTYSSVNYYM 716

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
             P +  +                  L  +  + +    G IIH  L+ +  +    +  
Sbjct: 717 DCPFRFYLYYV---------------LGFVTPEWERQIYGSIIHNCLKKLHIMMSEGKNI 761

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLE--NPMMTTAMSCDSYSEVSVSGKINCPKKD 861
            I        K    +  K    S+  L+   +      +       V V         D
Sbjct: 762 SIRDIMGIVDKYCKEENTKKYRNSVIDLVRDYHKNAKEFIGEI----VDVERPFTYINSD 817

Query: 862 IIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
           ++++G+ D +       + I ++K+      E  ++      QL  Y   L   YP + +
Sbjct: 818 LVVNGQADLVIRNKNGELCILDFKSMTKKGIESTNV----EIQLQTYGMALSKVYP-EPI 872

Query: 921 VCLLIY-VSEPKVFIIPQNK 939
             L+ Y + +  +  IP ++
Sbjct: 873 SHLIAYSIEDNHMQHIPNSE 892


>gi|303249732|ref|ZP_07335936.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|307251919|ref|ZP_07533820.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|302651299|gb|EFL81451.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|306860611|gb|EFM92623.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
          Length = 1202

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 134/1002 (13%), Positives = 278/1002 (27%), Gaps = 152/1002 (15%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-- 58
            L     + L  + +    D+         +I++ +   +     T  KKA   +      
Sbjct: 211  LNGELAVHL-AALQHFLADVKRHWSAHGEEISRLIESELAKKYKTGEKKALNRRSYQTRY 269

Query: 59   TQCIEERFSLLSSFFLTQKFTPQ-----KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
             +         ++  L+     Q     +  + ++  + +  L         + +    +
Sbjct: 270  LEKWRASVDEWAASSLSYLPEEQFERFCQEFLNEKAEEGAEPLVHPHFAKNQQILTAYQQ 329

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                K              +     + K  +    F D++   N  L   +  A +  +I
Sbjct: 330  QFANKQKPLL--LYQFLLAVRTKLADYKATHSEKSFNDMLTLLNQAL-NAERGAELAAQI 386

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
              +    +IDE QDT   Q+E+   +            +      +GD KQSIY F GA+
Sbjct: 387  RAQFPFAMIDEFQDTDKEQYEIFHKIF------MQEAHTNHGFIMIGDPKQSIYKFRGAD 440

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                L   +          Q      L  ++RS   I++  +++F  PE A+        
Sbjct: 441  IFTYLTASQ----------QAQQKRTLAKNWRSLPPIVSATNRLFEFPEAAENSPFLYQG 490

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H                  S        +          L  +    + A++ AY I
Sbjct: 491  IQFH------------------SVEAKASEAELIGADYVNCYLQAKFDEKLAAKQCAYQI 532

Query: 354  SNMIGTDTIFSNG--------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
               +        G        +    QAKDI +LVR      LI      L      SV 
Sbjct: 533  QQQLKQMEAGEFGLKFTNTTEEINAFQAKDIAILVRSHSQATLIKSALAELGIR---SVF 589

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             +++  +      K+L+ +    L+       +  L + L+  S  +I ++         
Sbjct: 590  LSEKESVYQSETAKELLWVLYACLNPYHQRHLLSALGTTLWGLSATEIHQLKNS------ 643

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
              E            +Q + +    L  + +          +    +   + ++      
Sbjct: 644  --ELQWDEQVGRFIAYQQIWQQQGILPMLHKLFMQEGIIERLRANPRDSDRRLTDLL--- 698

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGL 583
               L E L   + + +N  + ++    +L +            +    ++I+T+H AKGL
Sbjct: 699  --HLTELLQNAMPSLENESALVRWYERQLAKTDSTEEHILRLESEEELIKIVTIHGAKGL 756

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            + P+V+L   G +    K                                 +   + +  
Sbjct: 757  QYPIVWLPFIGKKNQGAKASNLAIYRDEQG---------LAHWYFGKPSEQVQALMDREE 807

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSN--------------EKKSNQRTWYDMVYDSF 689
              E  RLLYV +TRA  QL +       +                  + +          
Sbjct: 808  LAEDLRLLYVAVTRAESQLNLILPQRFEDGWNAVHYLLSNGEIGLDKSYKAEISTSEYLQ 867

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPEN----------------TPLEREETIKQL 733
                  + ++L   I  D+W    + +                     + L ++      
Sbjct: 868  QKGIDCQAVELDEKIANDKWRPAPFVSETLSAYHFSGQIQQTGLVASFSALHQQHEWAMQ 927

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKL 789
                    K F     D ++  +L P T +     N E+          +   G I+H  
Sbjct: 928  HHTGYSMPKAFESAGQDYDQQQVLTPETDNLFALDNEETNAYSSYQFPHSTKVGNILHSF 987

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---MMTTAMSCDSY 846
             +          +  +T            +  +     +     +     +         
Sbjct: 988  FEHSDFQQAVDFEQILTICEQLGLDENWHEPLQKWFEKVLATPFSETEFALKDVPITKRL 1047

Query: 847  SEVSVSGKINCPKK--------------------------DIIISGRIDQISISQQNIFI 880
            +E     ++                               +  + G +D I    +  ++
Sbjct: 1048 NEWQFYLRLKNSDGLRKLNQLLKQYSAVSAKLPDLNLPQLEGYLRGFVDCIVQVNEKFYL 1107

Query: 881  FEYKTHHH-------VPQEIEHIPY--THIAQLSIYEKILKD 913
             +YK++           Q +E       +  Q  +Y   L  
Sbjct: 1108 IDYKSNFLGYLAQDYSRQNLEKTIGQYRYDLQYLLYTLALHR 1149


>gi|239787415|emb|CAX83890.1| Exodeoxyribonuclease V, beta subunit [uncultured bacterium]
          Length = 1228

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 129/1055 (12%), Positives = 286/1055 (27%), Gaps = 163/1055 (15%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ-----TLQQASQTQC 61
            L+  E +  + ++ +      V    ++V              A+        Q    Q 
Sbjct: 213  LAAPEPFAALLEERYQARTRLVEMKRRFVGWLPALQALLDEAVARKWVNGRKLQVRYYQP 272

Query: 62   IEERFSLLSSF----FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
              +  +   +     F          +    + +     +            +      +
Sbjct: 273  WLDLLAAWCADARQPFPAWSDAAWWRLTPAGLAEAWKVGQPPAHPVFLAVETLHGEQVRW 332

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
             M       +  A ++   +   K     ++F+D+++  +  L+  + +  +   + ++ 
Sbjct: 333  SML-CQRLLVHAAHWVAERFAAEKAGLACMEFDDVLLRLDAGLQGPNGAR-LAALLRRQF 390

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               LIDE QDT  +Q+ +  ++  D             L  +GD KQ+IY+F GA+    
Sbjct: 391  PVALIDEFQDTDPVQYRIFAAIYRDL----AGADDGTALVLIGDPKQAIYAFRGADIHTY 446

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L  +R    R            L  +FRSTA ++  V+++F+  E   G           
Sbjct: 447  LAARRALAGRID---------TLGRNFRSTAAMVQAVNRLFAAAETRSGGGAFLQRVAGE 497

Query: 298  RS---SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                   +   G   LW                               + +A   A  + 
Sbjct: 498  DPIPFFPVTAQGRNDLWVVDGVSQ------------PALTLAWSGEPRAWMADACASEMV 545

Query: 355  NMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
             ++             +G    ++  D+ VLV+ R +  L+              V  +D
Sbjct: 546  RLLQLGQEGRAGFRAGDGSLTPLRPVDLAVLVQSRAEYALLRAALARRGVR---CVYLSD 602

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            +  +       ++        + ED +     L +        +I  +           E
Sbjct: 603  QESVFASPCAFEMRHWLAACAAPEDTVLLRTALATATLGVGWLEIDALGRD--------E 654

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
             + +         + + +    L  + +        + +L  +   ++   R   +++  
Sbjct: 655  RLLEQRMRQFVGLREIWRRQGLLPMLRRLLHEFAVPSRLLAGEIDGERSGERLLTDIL-H 713

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPP------TIKRAHSANHNEVRIMTVHTAKG 582
            L E L       +   + L+ L   L Q                ++ + VRI+TVH +KG
Sbjct: 714  LAELLGGQAVAGEGELAVLRFLDEALRQADEGAREESERLSRLESDADLVRIVTVHKSKG 773

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE P+VF+   GS          M        +  +                 +  L   
Sbjct: 774  LEYPLVFVPFAGSCRPVSARDLPMRGHDDAGVEQLLF----------AADEAQLARLDLE 823

Query: 643  TQEEYNRLLYVGMTRASDQLII-----------CKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               E  R LYV +TRA   + +             H+     ++ ++     ++      
Sbjct: 824  RLREETRRLYVALTRARYAVWVGVVLERRFANSALHALLGGPEELSEAGIAALLMPLNRA 883

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN-- 749
            D  +                    T         +     +          L +P+    
Sbjct: 884  DGTIVATPAPAPEWHRFQPHDGEGTGAAWRGGARQARRRVRDPWWMASYSALLAPLGPMA 943

Query: 750  ---------------DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI- 793
                            +       PS            L +  +    G ++H+LL    
Sbjct: 944  PNAPESPGEAQFRELALERFVPPAPSDGSGASDGGEAGLHTFPRGAKAGTVLHELLAWCG 1003

Query: 794  ---FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCDS 845
               F       +        +      +     L   +T  L                  
Sbjct: 1004 VCGFGAVAADSERVRQEVARRLEPRGWSAWRDPLTRWLTTFLTTRFELSGSGGALFCPRD 1063

Query: 846  YSEVSVSGKINCPKKDI-----------------------------IISGRIDQISISQQ 876
                 V  +       +                             ++ G +D +   ++
Sbjct: 1064 LEHYQVEMEFWLAVGHLPTAQLDQWACTTIEPGRDRPPLQGRALHGMVKGFMDLLFEHRR 1123

Query: 877  NIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNKSLV------ 921
              ++ +YK+      +  + P           H  Q  +Y   L      + +       
Sbjct: 1124 RYYLIDYKSTWLGADDAAYTPEAMRAEILHARHDLQGILYLYALHRQLAARLVDYAPERH 1183

Query: 922  ---CLLIYVSEPK-----VFII-PQNKLNKAFAEI 947
                L +++   +     ++ + P  ++ +A   +
Sbjct: 1184 LGGALFVFLRGLEAPGQGIYRLEPTAEMMRALDGL 1218


>gi|196035398|ref|ZP_03102803.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus W]
 gi|195992075|gb|EDX56038.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus W]
          Length = 688

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  +K ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLMKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|167766292|ref|ZP_02438345.1| hypothetical protein CLOSS21_00796 [Clostridium sp. SS2/1]
 gi|167712011|gb|EDS22590.1| hypothetical protein CLOSS21_00796 [Clostridium sp. SS2/1]
          Length = 620

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 108/603 (17%), Positives = 193/603 (32%), Gaps = 128/603 (21%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           +  D  + +++   E   ++ +      + S      + K +   YEE   +N  +DF+D
Sbjct: 123 EIDDEADFMRQIIQEISLVKGQMIYLAYYHSGCCGDEVFKEIYRAYEEKLHENRWIDFDD 182

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +++ T +LLK+      IR    Q+  +ILIDE QD + IQ+E+++ L  +         
Sbjct: 183 ILVYTYELLKE---REDIRKAWQQKFPYILIDEFQDINKIQYEIVKMLAGE--------- 230

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
             + LF VGD+ QSIY F GA P+ +L   +  +            + L  ++R   +I+
Sbjct: 231 -TKNLFIVGDDDQSIYKFRGARPELMLNFPKDFEN--------TRQVILNRNYRCGEEIV 281

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
            V + + S           +         R      V++        +++          
Sbjct: 282 QVAEDIISYNTKRFEKKMQA---------REDAASMVEVRTFKDHYEENK---------- 322

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                            I YTI   +   T              I +L R  +       
Sbjct: 323 ----------------HIIYTIKEEMAKKTPL----------SQIAILYRTNQGPR---- 352

Query: 392 LTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                   Y I     D    L DH   K+++      +      +F+ ++  P    S 
Sbjct: 353 QLIAALMAYNIPFYMQDAVPNLFDHWISKNIIDYMHLAMGDRKRSTFLRVMNRPKRYISR 412

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           + + +      +                      ++   E + I +  +P      I  +
Sbjct: 413 EYLTESQVSFDDLL--------EKVKDKPWLYEYVEDFKEDLRIMKNMTPLMAINYIRKS 464

Query: 511 KKG------RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                      +F      E   VL+E        +     + +     +++Y   + R 
Sbjct: 465 VGYNAYLAEYARFRKIQEEEFTQVLEELQESAKGYD-----TYEAWFDHIKEYTEELNRQ 519

Query: 565 HSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                     V + T+H+ KGLE   VFL D    V  H                     
Sbjct: 520 SKENQKEKEGVVVSTMHSTKGLEFERVFLPDVNEDVIPH--------------------- 558

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                          K +K+   EE  RL YVG+TRA   L I       N+     R  
Sbjct: 559 --------------KKSMKEEDVEEERRLFYVGVTRAKKYLHILSVKKLYNKDSRPSRFV 604

Query: 682 YDM 684
            ++
Sbjct: 605 EEL 607


>gi|228920050|ref|ZP_04083399.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839506|gb|EEM84798.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 688

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGDR---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRITETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|320353670|ref|YP_004195009.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
 gi|320122172|gb|ADW17718.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
          Length = 731

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 108/553 (19%), Positives = 192/553 (34%), Gaps = 121/553 (21%)

Query: 125 ASLTLAKYLN---AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                         HY + K  + ++D++DL+++   LL + + +   R+++     HIL
Sbjct: 183 HLTEFINDFYTIADHYRQFKLDHGLMDYDDLLVHWKRLLAESEQA---RHELSTRFQHIL 239

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ +Q E++R L                +  VGD+ QSIYSF GA+   ++R  
Sbjct: 240 VDEYQDTNQLQAEIVRLLA----------YRHSNVMVVGDDAQSIYSFRGADFFNIMRFP 289

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                          I++L  ++RST  IL + + V +  E     +  ++ T   R   
Sbjct: 290 DQFP--------GARIVKLEENYRSTEPILQLTNAVIANAEKKFTKTLFTSITGGTRPQL 341

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           +                                      + +  AR +   I        
Sbjct: 342 VVAP-----------------------------------NEAAEARYVVQEIQKRQAEG- 365

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    +   D+ VL R    +  +                      LT+   IKDL
Sbjct: 366 ---------VAVNDMAVLFRSGFHSFKLEIEL----ASQGFDFDKRGGLKLTESAHIKDL 412

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF--ANCGIS 479
           ++  R +++  D+LS+  +L   L       + KI     E++T    +  +       +
Sbjct: 413 LSFFRVVINPWDNLSWNRILLQ-LEKVGPKTVHKILQAIRESDTPIAALAAYRPGPAWKT 471

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEFLNFTLR 538
           +F+H+ + +H+L+  A   +P D F L++   +   Q+       +    LD+       
Sbjct: 472 QFEHLTRTLHQLLDPA--LTPSDQFDLVMAYYEPVFQKMYYDDYPKRRKELDQIKALIAG 529

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHN--EVRIMTVHTAKGLESPVVFLVDTGSQ 596
                   LQ  + +    PP    +  AN +   + + T+H+AKGLE   VF++     
Sbjct: 530 Y-----GDLQSFVDDTALDPPEATTSDDANEDGQRLILSTIHSAKGLEWDTVFVIGLAEG 584

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F H+H                                          EE  RLLYV  T
Sbjct: 585 RFPHQHATPG-----------------------------------EQWEEERRLLYVAAT 609

Query: 657 RASDQLIICKHSN 669
           RA   L +     
Sbjct: 610 RAKKLLYLTYPRE 622


>gi|229068885|ref|ZP_04202179.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus F65185]
 gi|228714169|gb|EEL66050.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus F65185]
          Length = 688

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVESGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|296501918|ref|YP_003663618.1| ATP-dependent DNA helicase [Bacillus thuringiensis BMB171]
 gi|296322970|gb|ADH05898.1| ATP-dependent DNA helicase [Bacillus thuringiensis BMB171]
          Length = 688

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGDR---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|311067675|ref|YP_003972598.1| putative ATP-dependent DNA helicase [Bacillus atrophaeus 1942]
 gi|310868192|gb|ADP31667.1| putative ATP-dependent DNA helicase [Bacillus atrophaeus 1942]
          Length = 761

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 96/627 (15%), Positives = 193/627 (30%), Gaps = 120/627 (19%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L      ++   +K +  +  ++K   + + +++                  +     
Sbjct: 239 DHLLKMEWQKEQYIKKALYEEGADEKEFPVDQAIQQIGYWKNSYLPGERIPLKDEWEKQV 298

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             L      HYE  KK++   DF D+     +L +   +   I         +ILIDE Q
Sbjct: 299 YRL----YEHYERQKKEHGQFDFNDMASACYELFQ---LRPDILEHYQTRFTYILIDEFQ 351

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q+++++ L           S  + L  VGD+ QSIY+F G+ P  +L  ++    
Sbjct: 352 DINPVQYKIMQMLA----------SPEQNLCCVGDDDQSIYAFRGSSPSFILDFQKDYP- 400

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RST  I++  D V    +     + +        ++R     
Sbjct: 401 -------GAKTVYLTANYRSTHPIVSSADLVVKKNKKRYVKTLE--------ATRDDVQH 445

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V  +                                  A  +   I   I         
Sbjct: 446 PVLFYPYD---------------------------EEEEATMVVSDIKEKIQNG------ 472

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALG 425
                + +D  VL R       I        +   +    +           ++ ++A  
Sbjct: 473 ----ARPEDFAVLYRTNSGGRAIYERL----HQSSVPYTADRGVQSFYSRRIVRQILAYL 524

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHV 484
               +++D  +   +L  P     +  +  +      E  ++ + + K  +    +    
Sbjct: 525 YVSQNEDDTEAIKHLL--PALFLKQSALNTLKALSITEDCSMVKALTKLPDLKPFQLNK- 581

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRN 539
           IK I       +   P +  T   G     +    R        +  D L +      + 
Sbjct: 582 IKKIVPFFASLRTMKPVEAITFAEGKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVVAKKF 641

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 ++ + ++ ++      K   +   N V++MTVH +KGLE   V+++        
Sbjct: 642 -----KTIPDFLAHVDHMRAAEKNKTAE--NGVQLMTVHRSKGLEFKTVYVLGAVDGSIP 694

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H                                 +  +   ++  EE  RLLYV MTRA 
Sbjct: 695 HDFSL-----------------------------ETARKGDETALEEERRLLYVAMTRAE 725

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVY 686
             L I   +N   +     R    ++ 
Sbjct: 726 QHLYISCPANRRGKTAHRSRFLQPLMQ 752


>gi|254445124|ref|ZP_05058600.1| UvrD/REP helicase domain protein [Verrucomicrobiae bacterium DG1235]
 gi|198259432|gb|EDY83740.1| UvrD/REP helicase domain protein [Verrucomicrobiae bacterium DG1235]
          Length = 1170

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 149/1046 (14%), Positives = 300/1046 (28%), Gaps = 189/1046 (18%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            S + + +    LP    + +++        G     K A+ L   S       +   L  
Sbjct: 199  SIDSLERRFRELPEALSNLVDRSEEYLKHLGKAR--KPAKQLSGKSPGLLACVKRGFLLP 256

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
              L           ++ +NK   DL             + D                   
Sbjct: 257  ADLGWLGDFSSEAWSKAMNKSGQDLP------LPPVTALIDVVLDQIESAYLSLIYNYRP 310

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +L+   E AK++  V+ F DL+ +    L   +    I   +    +  LIDE QDT   
Sbjct: 311  WLSGRLERAKQQANVISFNDLLHHLQRALTGEE-GTRIIEFLAGRYDAALIDEFQDTDRT 369

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q ++ RSL                LF +GD KQ+IY F GA+     +  +         
Sbjct: 370  QLKIARSLFGH---------GEHYLFYIGDPKQAIYRFRGADIYAYFQATQ--------- 411

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            G+      L  ++RS   ++  V+ +F            S  ++               +
Sbjct: 412  GEGLRNEILDKNYRSAPKLVEAVNALFESSRAGFVDERISFRSVESGLDAADFSSEQPPF 471

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              V  + ++   P+            +    +ILA R A   +  +             +
Sbjct: 472  RIVQLRLENPSYPK-----------SKSEYRNILAERAANDFAKRLNESP--------EL 512

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +A+D+  LV  R +                IS   +    +       DL  L   ++S 
Sbjct: 513  KAEDVSFLVNDRIEAA----ALSEALLQRGISAAIHADRSVFKTQEAIDLKQLLAALVSP 568

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
                       S                    +     +   +    ++   V +YI E 
Sbjct: 569  --------ARTSLKRG-----------ACAALDHSLSAVSMRSESFENRVAPVFEYITEW 609

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV----LDEFLNFTLRNEQNSYSSL 547
                   +       +L      +        E        L E L+     E+ S   L
Sbjct: 610  ARDWHTRNFDVALHGLLRLLNSEESPSGGLDTERRHANICQLGELLSEARDAEELSPRGL 669

Query: 548  QEL----ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                         +    +   S++  + +I+TVH +KGL+ P V L   G        +
Sbjct: 670  YNWLCRKTEANVSHNEEWQTRISSDERKPQILTVHKSKGLQFPYVILPFLG---LRRVRL 726

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-L 662
            K++       +D  I  + P   S         +H ++    E  RLLYV +TRA  + L
Sbjct: 727  KELASAYHGPEDELIIDYAPSPDSP------ASQHARREALAEDIRLLYVALTRAEHENL 780

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            +       S        ++   + D              +S+ +    +  +     +++
Sbjct: 781  VYLCPEELSRTGDLACSSFAQFLLDEGERTSSDAVAAQLHSLAEGSNGSLAFEQSPLDSS 840

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS---------------------- 760
               + E      +     +              +L+ S                      
Sbjct: 841  GFVQCEATDSHAETAAASENNLQNRARMPFVERVLSFSALNKGMHRDEDENSIELLEQEE 900

Query: 761  ------------TIDTKGKTNLE-SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                         ++      LE S+ +  +  + G ++H +L+                
Sbjct: 901  SASDELNIEPEAELEQTEAQPLELSIFTLPKGTHAGDLLHLILERFDFSRPETLSATTQQ 960

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY---------SEVSVSGKINCP 858
                +A  +  ++++ ++ +    +    + +  +  +           E+  S  ++  
Sbjct: 961  --AFDALQFEPRDFEPIVAAQISSIAKANLKSQFTEFTLEQISPDRRIPELEFSYPVSGD 1018

Query: 859  KKD-------------------------------IIISGRIDQISISQQNIFIFEYKTHH 887
             K                                 ++ G ID +      ++IF++K+++
Sbjct: 1019 VKSNILSALSRSDLGFIPTDWLEGLSHSEAGLPASMLRGFIDLVLEHDNRLYIFDWKSNY 1078

Query: 888  --HVPQEIEHIP-------YTHIAQLSIYEKILKD----SYPNKSLVCLL-----IYVS- 928
                P + +          + +  Q  +Y   LK      +P K           IYV  
Sbjct: 1079 LGPTPADYDQAAILESMGEHNYFLQYLLYCVALKRYAEWRFPGKPFEESFGGVFYIYVRG 1138

Query: 929  ------EPKVFIIPQNKLNKAFAEIS 948
                      + +P  +L +A  E  
Sbjct: 1139 ISPGKETGIFYDLPSPELLQALDEAL 1164


>gi|224532195|ref|ZP_03672827.1| DNA helicase [Borrelia valaisiana VS116]
 gi|224511660|gb|EEF82066.1| DNA helicase [Borrelia valaisiana VS116]
          Length = 698

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 95/544 (17%), Positives = 169/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I  +   I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKEYIQSKFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFGN----- 267

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +  +   R             
Sbjct: 268 ---VVKFYLMQNYRSNSNIVDIANEVISKNKNRYEKQITTRNSSDKR------------M 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +V Q  S       +     D                                     
Sbjct: 313 KFLVFQSTSDEAEYFSNLLVDNDI------------------------------------ 336

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    +               I           D   IKD++ L R  +++
Sbjct: 337 ---DTAILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISKFQHV 484
            D ++F+ M+  P     ++ + KI +  ++ +  +              N         
Sbjct: 390 RDKIAFLRMINKPSRGIGKNTLEKIISTLNDDDVNFNLFCASKKVLSLLKNRVKESLLLF 449

Query: 485 IKYIHELIHIAQ---FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           +    EL        + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNTYDELGKKLFEDNYINLSAFIEDVVIKFGILDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGDFKSN-IFLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|121634579|ref|YP_974824.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
            FAM18]
 gi|20271140|gb|AAM18525.1|AF495855_1 RecB [Neisseria meningitidis]
 gi|120866285|emb|CAM10026.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
            FAM18]
          Length = 1204

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 132/982 (13%), Positives = 281/982 (28%), Gaps = 167/982 (17%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE--KLKK 102
            +  +    L+Q + +  +    + L    L       +  + +     +    E  KL  
Sbjct: 271  SFAELFDALEQKALSPDLPFLEAKLHERLLKLASDKLEAGLKKGKTPDAAVFAELQKLAD 330

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             + +   + +      +       L L  YLN    E KK      F+DL+++ +  L  
Sbjct: 331  FRRDLDALEEAEEATIIRLQ----LDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTD 386

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               +  +   + +     LIDE QDT  +Q+E+ + +           +  R LF VGD 
Sbjct: 387  NPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---------IAQNRPLFLVGDP 437

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQ+IYSF GA+    L+                    L  ++RS A ++  +  +F + E
Sbjct: 438  KQAIYSFRGADIYAYLQAAED----------ARHRYTLATNYRSHAALIGSIGALFRLKE 487

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                L     + +   ++R     + +     V       N +            ++   
Sbjct: 488  RPFVLENIGYSEV--GAARAESRLSPERPAVQVRWLHENDNEK----------ANKDVLR 535

Query: 343  SILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               A   A  I+  +        N K   +Q+ DI VLVR   +  +++   +      +
Sbjct: 536  RRAADYCADEIAHALNEAAECRLNFKGCPLQSGDIAVLVRTHNEAVMVSAALK----KRQ 591

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            +  V   R  +        L AL  F L      +   +L S +F +    +        
Sbjct: 592  VQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDAQQLHDFNQNES 651

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E     E                       +                       + +SR 
Sbjct: 652  EILHWAESA------------------RTALDNWNQYGIFAAMQQFSQTHGIETRLLSRN 693

Query: 522  GNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRI 574
                +    + L        +  + ++L + + +                  ++ + V+I
Sbjct: 694  NGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNSGDNRAIRLESDEDLVKI 753

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            +T+H +KGL+ P+V+         +     ++    +   +               +  D
Sbjct: 754  VTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ---------LSED 804

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY-------- 686
              K        E  RLLYV +TRA +QL I    ++             +          
Sbjct: 805  EQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRQ 864

Query: 687  -DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP----- 740
               +  D      +    +  +     +++       P        Q  +          
Sbjct: 865  TYDWEKDGIAMLKRNWRRLTDNAPAGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPERR 924

Query: 741  ----------------------KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                                  ++   P  +         PS  +T   ++  S+    +
Sbjct: 925  FRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPS--ETPTASDGISIHDFPK 982

Query: 779  TFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-- 835
                GL +H++L+          ++  I     K    +       +        + P  
Sbjct: 983  GTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYG--FEEIWLPAVAEMAEACRKTPLT 1040

Query: 836  -----------------------------MMTTAMSCDS--YSEV--SVSGKINCPKKDI 862
                                          +    + D     EV  + +  ++    + 
Sbjct: 1041 GAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNG 1100

Query: 863  IISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILK 912
             ++G ID +       I + +YK++H             +     + +  Q  IY     
Sbjct: 1101 FLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEAVAHHHYYLQALIYAVAAA 1160

Query: 913  DSYPNK-----SLVCLLIYVSE 929
              +  +     ++    +++  
Sbjct: 1161 RYFKLRGQPPAAVSVRYLFLRG 1182


>gi|237737885|ref|ZP_04568366.1| DNA helicase II [Fusobacterium mortiferum ATCC 9817]
 gi|229419765|gb|EEO34812.1| DNA helicase II [Fusobacterium mortiferum ATCC 9817]
          Length = 939

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 137/912 (15%), Positives = 278/912 (30%), Gaps = 151/912 (16%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK-----EKLKKSQDEFIK 109
           + S  +        +   F       + + I +       D+      E+ KK      K
Sbjct: 101 EYSFFRDGYRVLDDIDQQFFIYSRIKRFSEI-EGYRDFFKDIPGINSWERSKKILWWLNK 159

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           I +        ++    +   K  +  Y E   +  ++DF  +      +L + +    +
Sbjct: 160 INEEGKRLDNIRTENRKILFLKEAHRVYHEMLVEENLMDFTTIQRELYRILHREE----V 215

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             K+   I +I+IDE QDT+ IQ ++I  L           +    +  VGD+ Q IY F
Sbjct: 216 LEKLQNRIEYIMIDEYQDTNTIQEKIIFML----------GAKKENICVVGDDDQGIYRF 265

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + +LR     +K       +   I L +++RS  DI+   ++   +         
Sbjct: 266 RGATVRNILRFPERFEK------GRCKKINLDINYRSHEDIIRFCNRWIKLIN------- 312

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                                W +   + +      +E   +         S       I
Sbjct: 313 ---------------------WREFRYEKEIVPPEDKEFSKTSGVIRIGGDSEKHWKDNI 351

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I  +  T  I             +  L R  ++  +     +    +  I +     
Sbjct: 352 YKFIKKLYTTKKISD--------YSQVAFLFRSVQNPNVKE--LKNYLEECGIPIYSPRS 401

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS--PLFNFSEDDIFKICTQRHETETVY 467
               D + IK  +        Q   L    +      +F + +D + ++       E +Y
Sbjct: 402 KDFFDRIEIKLTIGALLVYFPQCKYLVLDEVQNRGQSVFYYYKDCLTQLKKVIQNDEELY 461

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +++ +      S     +  I  L  I       + F   +       +  S   NE  +
Sbjct: 462 KWLVERRKANAS---EEVITIPSLRKIFYSLLQFETFKKFI-------KLESEGVNEGRE 511

Query: 528 --VLDEFLNFTLRNEQNS------YSSLQELISEL---------EQYPPTIKRAHSANHN 570
              L  F     + E+ S         +++++            ++     +        
Sbjct: 512 TYNLGVFTEILEKFERLSKVEDIAKEEIEKVVRYFFMVYMKNLYQKRVDEYENKEEFPLG 571

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +  +T H AKGLE P+V +    S        ++  +   L                  
Sbjct: 572 AIPFLTFHQAKGLEFPIVVVGSLDSSPVERGKTEEDILEELLRLGDD------------- 618

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                 +   +    ++ R+ Y   +RA + L++    N S   +   RT+  M     +
Sbjct: 619 -----YEPRDRKNIFDFWRIYYTAFSRAQNLLVLTSIENRSGRNELPSRTFRPMYESIPY 673

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
            D+                    +   + E  PL+  E  + L     I    F P    
Sbjct: 674 VDDE------------------RFQLKNLEVEPLKVTENKELLSYTGHILLYEFCP---- 711

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSY 808
                      +  +   + +     N     G+ +HK+++ I    L    ++  +   
Sbjct: 712 -----------LKYRFIKDFKFKALSNPKTYYGIFVHKVIERIHKEFLSGIFQRESLKEL 760

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI 868
                         +    I   ++  +       +  S +S   K    +KD II G +
Sbjct: 761 IENIGSSLEKNLRTDFSGEIREKVKLEVERYLDRNNLKSIISTEVKNYSVEKDYIIEGTL 820

Query: 869 DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV- 927
           D +  +   + + ++KT  +    +E     +  QL IY  +LK+ Y        L Y+ 
Sbjct: 821 DLLRKTSNGVELIDFKTGAYDKARVE----IYKRQLEIYTYLLKERYTLDETKAYLYYIE 876

Query: 928 SEPKVFIIPQNK 939
            E  +  I   +
Sbjct: 877 EENSLVEIELEE 888


>gi|240125312|ref|ZP_04738198.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-92-679]
 gi|268683914|ref|ZP_06150776.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae SK-92-679]
 gi|268624198|gb|EEZ56598.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae SK-92-679]
          Length = 1200

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 131/936 (13%), Positives = 267/936 (28%), Gaps = 160/936 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  + T      L L +YLN+   E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEETTMIRLQLDLIEYLNSSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +      + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +    +           +      +     
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKA 529

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKR 383
             ++                  A   A  I+  +   +    N K R +Q+ DI VLVR  
Sbjct: 530  NKDVL------------RRRAADYCADEIARALNEASGGRLNFKDRPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +I+   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMISAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                       + I Q       
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDIWQKYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +     K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +     +++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRTYACEKDGITMLKRNWRRVADNAPAGTDFAFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  GNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+         +++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +   ++ D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY----- 898
             EV  + +  I+    +  ++G ID +       I I +YK++H      + +       
Sbjct: 1083 PEVCRAAAETIDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQ 1142

Query: 899  THIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             +  Q  IY       +  +     ++    +++  
Sbjct: 1143 HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|254493282|ref|ZP_05106453.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 1291]
 gi|293399482|ref|ZP_06643635.1| exodeoxyribonuclease V, beta subunit [Neisseria gonorrhoeae F62]
 gi|226512322|gb|EEH61667.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 1291]
 gi|291610051|gb|EFF39173.1| exodeoxyribonuclease V, beta subunit [Neisseria gonorrhoeae F62]
          Length = 1200

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 130/936 (13%), Positives = 267/936 (28%), Gaps = 160/936 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  + T      L L +YLN+   E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEETTMIRLQLDLIEYLNSSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +      + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +    +           +      +     
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKA 529

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKR 383
             ++                  A   A  I+  +   +    N K R +Q+ DI VLVR  
Sbjct: 530  NKDVL------------RRRAADYCADEIARALNEASGGRLNFKGRPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +I+   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMISAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                       + I Q       
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDIWQKYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +     K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +     +++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRTYACEKDGITMLKRNWRRVADNAPAGTDFAFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  GNADQAAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+         +++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +   ++ D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY----- 898
             EV  + +  ++    +  ++G ID +       I I +YK++H      + +       
Sbjct: 1083 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQ 1142

Query: 899  THIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             +  Q  IY       +  +     ++    +++  
Sbjct: 1143 HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|228913901|ref|ZP_04077526.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228845840|gb|EEM90866.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 688

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 207/659 (31%), Gaps = 120/659 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 165 ILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L       
Sbjct: 224 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------ 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 275 ----SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 322

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 323 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 365

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 366 ------------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVS 398

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R ++      S   +L +   
Sbjct: 399 R---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYI 455

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 456 GRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKK 514

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 515 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQ 574

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 575 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 625

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|229143938|ref|ZP_04272355.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST24]
 gi|228639501|gb|EEK95914.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST24]
          Length = 688

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGDR---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKVPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|318060453|ref|ZP_07979176.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
          Length = 1839

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 120/963 (12%), Positives = 264/963 (27%), Gaps = 135/963 (14%)

Query: 38   SMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK 97
             + +G    L   + L+        E   +      +      +  + T+    +   + 
Sbjct: 94   RLLSGPEQDLAVRELLEG-------ETALAAQGRGRVRWPGQLRACLTTRGFADEVRAVL 146

Query: 98   EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
                 ++   + +          ++       A    A Y +      V+D+ +L+   +
Sbjct: 147  -----ARSRELGLDPAALHRFASRTGRPDWQAAAAFLAEYLDVLDLQGVIDYAELVHRAD 201

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
             L ++ DV+      + Q  + + +DE QDT   Q  ++ +L              RTL 
Sbjct: 202  LLARRPDVAKD----LAQAYDAVYVDEYQDTDPAQVRLLEALAGQ----------GRTLL 247

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            A GD  QSIY+F GA+   +L      +   T  G    +  LP + R+   +L     +
Sbjct: 248  AFGDPDQSIYAFRGADVNGILDFPDTFR---TTGGAPAPVAVLPTARRAARGVLDATRAL 304

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                   +  +          S+R G    V       ++ D   +  + +         
Sbjct: 305  TLRIPLTRLPAAAVRAHRDQLSTREGGSAEVYTCPSPGAETDHVADLLRRAHLEDDVPWG 364

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
              +       R+     ++             +    +  V               R   
Sbjct: 365  DMAVLLRAGSRLPALRRSLTAAGVPVDTAGDELPLRLEPAVQPLLTALRVTAEAEARGET 424

Query: 398  NDYKI---------------SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC--- 439
                                     D     +   + +       +     + S++    
Sbjct: 425  PQAGETPPVGETPAGEGESGPAPEGDSVPEAEGEPVPEGEIQPVPLPQPSPEPSWIATET 484

Query: 440  ---MLKSPLFNFSEDDIFKICTQRHETETV-------------------YEYIQKFANCG 477
               +L SPL      D+ ++       E                      E +       
Sbjct: 485  AVDLLASPLCGMDAADLRRLGRALRAEERAGGNPVPPPSDVLLARALAEPERLIAHDAAY 544

Query: 478  ISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFIS------RFGNEVIDVLD 530
                + +   +      +A+  +  +    +    +   +           G      LD
Sbjct: 545  AKAARELGLLLARTRSLLAKGGTAEEALWELWNGTRWPTRLERASRRGGAAGRNADRDLD 604

Query: 531  E----FLNFTLRNEQNSYSSLQELISELEQY--PPTIKRAHSANHNEVRIMTVHTAKGLE 584
                 F       E+         ++E E            +   + VR+MT H AKGL+
Sbjct: 605  AVCALFATAARAEERTGGRGALNFLAETEAQEIAADTLSGRTVRPDAVRLMTAHRAKGLQ 664

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              +V +      V+     +   +        G+   +                   +  
Sbjct: 665  WRLVVVAGVQEGVWPDLRQRGSLLEADRIGSDGLAEPLTPG----------------ALL 708

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFHNDERVKKIKLTNS 703
             E  RL YV  TRA+D+L++      + +     R   ++ V          + + +   
Sbjct: 709  AEERRLFYVAATRAADRLVVTAVKAPAEDGDQPSRFLTELGVEPRHLTVRPRRPLAVPAL 768

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK--------------- 748
            + +      +            R       + +      + +                  
Sbjct: 769  VAELRATTVDPHASPALREAAARRLARLAALTDGDGRPLVPTAHPGTWWGLADETVNEVP 828

Query: 749  -NDINEPYILNPSTIDTKGK---------TNLESLLSDNQTFNRGLIIHKLL-QVIFTLP 797
              D  +P  L+ S +                + +    +     G ++H L  +V     
Sbjct: 829  VRDPAQPLALSASALGQLVDVCALQWFLGREVRAEAPASTAQGFGNVVHVLADEVATGRS 888

Query: 798  EHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851
                   +            +A    A+E +N   ++ R L   ++         SE   
Sbjct: 889  PADLDVLMERLDTVWDGLAFDAPWKSAQEKENARAALERFLRWHVLDRTGRTPVASEHPF 948

Query: 852  SGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
               +     +I I G +D++        ++ ++KT  + P   E     H  QL++Y++ 
Sbjct: 949  DVTLPAGDHEIRIRGTMDRVDADAAGRAYVVDFKTGKNAPTADEV---DHHPQLAVYQRA 1005

Query: 911  LKD 913
            + +
Sbjct: 1006 VAE 1008


>gi|224534254|ref|ZP_03674832.1| DNA helicase [Borrelia spielmanii A14S]
 gi|224514356|gb|EEF84672.1| DNA helicase [Borrelia spielmanii A14S]
          Length = 698

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 93/545 (17%), Positives = 169/545 (31%), Gaps = 125/545 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 YEE K KN   DF DLII +  +L++      ++  +  +   I +DE QDT+ 
Sbjct: 165 AEYIKIYEEEKAKNNAFDFSDLIIKSILMLRQS---KPLKESVQSKFKVIFVDEYQDTNY 221

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++        
Sbjct: 222 SQFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFGNVI-- 269

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                    L  ++RS+++I+ + + V S  +N       +  +   R            
Sbjct: 270 ------KFYLVQNYRSSSNIVGIANGVISKNKNRYEKQIITQNSSDKR------------ 311

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            + +V Q  S       +  +  D                                    
Sbjct: 312 MKFLVFQSTSDEAEYFSNLLTLNDVET--------------------------------- 338

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    +               IS          +   IKD++ L R  ++
Sbjct: 339 ------AILYRFNSQSFYFETSF----LKKNISYKVLGSIKFYEREEIKDIICLLRLFIN 388

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISKFQH 483
           ++D ++F+ ++  P     +  + KI +  ++    +              N        
Sbjct: 389 RKDKIAFLRIINKPSRGIGKTTLDKIISALNDDGVNFNLFCASKKVLGLLKNRAKESLLL 448

Query: 484 VIKYIHELIHIA---QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +    +L        + +   F   I+        +      E +  +DE +N  +   
Sbjct: 449 FLNAYDDLSKKLFEDHYINLSAFINDIVIKFGLLDYYKKFDKEEKLRNIDELINSGIEYS 508

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                + + L   LE    +   +     N + + ++H  KGLE   V +      +   
Sbjct: 509 G----TFEGLAIFLENSSLSPLISGDFKSN-IFLSSIHGVKGLEFDRVVISGLEKGLLP- 562

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              I+ L +   EE  RL YV +TRA  
Sbjct: 563 ---------------------------------AEIEELTEDRLEEERRLFYVAITRAKS 589

Query: 661 QLIIC 665
           +LII 
Sbjct: 590 ELIIT 594


>gi|291535991|emb|CBL09103.1| Superfamily I DNA and RNA helicases [Roseburia intestinalis M50/1]
          Length = 613

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 106/553 (19%), Positives = 188/553 (33%), Gaps = 122/553 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           T+ + +   Y E   KN ++DF+D+++ T +L ++    A I      +  +ILIDE QD
Sbjct: 157 TVFRKVYRQYHEFLYKNRLIDFDDMLVYTKELFEQ---RADILAAWQNKYRYILIDEFQD 213

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + IQ+++I+ L  +           + LF VGD+ QSIY F GA+P+ +L  K      
Sbjct: 214 INRIQYDIIKMLAGE----------RKNLFIVGDDDQSIYRFRGAKPEIMLHFKDDYP-- 261

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +   + L +++RS  +I+T    +    +                         
Sbjct: 262 ------EAETVLLDVNYRSVKNIVTSAGYLIGHNKERFQK-------------------- 295

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       +        W  +     + +       RI + I   +          
Sbjct: 296 --------KIEAADQGDIPVEWQLFESQRKENA-------RIIWDIQEAVEKG------- 333

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
               + ++  VL R          L      +Y I     D    L +H   KD+ A  R
Sbjct: 334 ---AKYEEFAVLFRTNTQPR----LLMEQLMEYNIPFRTRDTVPNLYEHWIAKDIFAYIR 386

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +   +   F+ ++  P    S + + +        E  YE                I+
Sbjct: 387 IAMGSRERRDFLQIMNRPKRYISRESLDEETVAFDVWEWYYE--------EQPWVAKRIE 438

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKG------RQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +   I + +  SP+     I  A            +     +++ DVLDE L+      
Sbjct: 439 KLESDIRMLERLSPYAAINYIRKAIGYDEFCTEYADYRRIKADDLFDVLDELLDAAREY- 497

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             +Y +  + I    +      R  + N N V + T+H+AKGLE   V+++D    V   
Sbjct: 498 -KTYDAWFDHIENYTKELQEFYRVQNQNPNSVALATLHSAKGLEYENVYIIDVNEGVMP- 555

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                               K + +   EE  R+ YVGMTRA  
Sbjct: 556 ----------------------------------YKKAVLEPEVEEERRMFYVGMTRAKK 581

Query: 661 QLIICKHSNTSNE 673
            L +      +++
Sbjct: 582 NLHLFSVRQLNHK 594


>gi|152964961|ref|YP_001360745.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans
            SRS30216]
 gi|151359478|gb|ABS02481.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans
            SRS30216]
          Length = 1125

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 136/1051 (12%), Positives = 281/1051 (26%), Gaps = 189/1051 (17%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQ 60
            +       +   E +      L     +  ++   L+ +   +    +    L +A    
Sbjct: 61   RAATAELRDRVRERLVATRDALADPASARRSRDAVLAHLAADDARAAEHRARLSEALAGF 120

Query: 61   CIE--ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR------- 111
                           LT   T      +  + +   DL E++         +R       
Sbjct: 121  DTATVATIHEFCRQVLTSLGTAADVDPSATLVEDVDDLVEEVCDDLYLRFAVRPGAGVPP 180

Query: 112  -DRFNTYKMFKSTLAS-------------------LTLAKYLNAHYEEAKKKNCVLDFED 151
             DR    ++ ++ +                     +  A  +    E  K+   VL F+D
Sbjct: 181  FDRPTALRIARAAVDRADARIEPPDTLPGSPENLRVRFALGVRREVEARKRSRRVLGFDD 240

Query: 152  LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
            L+    D L           ++ +  + +L+DE QDT  +QW+V+R              
Sbjct: 241  LLTRLRDALTDPVAGPVACERLRRRYSVVLVDEFQDTDAVQWDVLR----------TAFH 290

Query: 212  SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
                L  +GD KQ+IY+F GA+ +  L            AG   +   L  + RS   +L
Sbjct: 291  GQGPLVLIGDPKQAIYAFRGADVRSYLD----------AAGVAGTTATLSTNHRSDPLVL 340

Query: 272  TVVDKVFS-IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
                 +        Q +           ++ +   G        V   +    P      
Sbjct: 341  AGTAALLRGAALGEQRIVVRPVDAAHAAAALVDGSGAPDPAPVRVRVLERDGLPTTGRGL 400

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                      +    A+ +A     +        +G +R ++A D+ VLVR      L+ 
Sbjct: 401  PPVGEARAVVARDTAAQVVAVLREGLR---VRPRDGGERDLEAGDVAVLVRTGAQAALVQ 457

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
               R       +  V +    +    A ++ ++L   +           +  S     S 
Sbjct: 458  EELR----RRGVPCVLSRGPSVFATPAAQEWISLLEAVEQPHRAPRVRRVALSSFVGRSA 513

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             ++          +   +      +  + ++  V+         A     H     +LG 
Sbjct: 514  AEL----------DAAGDRATDELSVQLREWGAVLTERGVAGAFAVVGEAHRLPGRLLGV 563

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--------YPPTIK 562
            + G ++         +  + E L+    +  N    +  L+S L                
Sbjct: 564  EGGERRLTD------LRHIAEVLH--RESALNPGGGVSSLLSWLRARVEEAAGDADRERS 615

Query: 563  RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
            R    +   V+I TVHT+KGLE  VV +              ++ +  + +    + +  
Sbjct: 616  RRLDTDRAAVQIATVHTSKGLEFEVVCVPFGWDAPGGGGSKDRLPVAHAPDGPRALHVGG 675

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
            P +       +   +        E  RLLYV +TRA  +L++    + + E+ +  R   
Sbjct: 676  PGA----PGYAAACRAADTEDLGEELRLLYVAVTRAVSRLLVWWAPSQNTEEGALHRLLL 731

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                 +      V   ++ +S     + A               +           +   
Sbjct: 732  AEDPLAVPESLPVPGDEVLSSRLASRFPAGGPVAVETVPLRTPEDRLPAVAAPAAHLAVA 791

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNL-------------------------------- 770
             F    +        +  T                                         
Sbjct: 792  RFRGAVDLGWRRTSYSGLTRGVHDGPGAGHAVLAGPEVDVTDDEVDLDAAGATAADDDPR 851

Query: 771  ------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                    +         G ++H +L+  F      R   + +   +     PA++    
Sbjct: 852  GWRATVSPMADLPAGTGFGTLVHAVLEG-FDPAVPDRTAHLAALAREQFDPQPAEDLALA 910

Query: 825  LLSITR-----LLENPMMTTAMSCDSYSEVSVSGKINC---------------------- 857
            L  + R     L     +      D  +E+     +                        
Sbjct: 911  LGPVLRTGLGPLAGGAALEGFPVADRLAELDFEMPLAGGDAAGPAGPRVGDVAGLLRRHL 970

Query: 858  --------------------PKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQ----- 891
                                      ++G ID +    +    + +YKT+          
Sbjct: 971  PPGDPVHRYADALEDPVLGEEGLRGYLTGSIDAVLRRREGGFLVVDYKTNRLGAPGEILT 1030

Query: 892  ---------EIEHIPYTHIAQLSIYEKILKD 913
                     +   +   +  Q  +Y   L  
Sbjct: 1031 AWHYRREALDEAVLAAHYPLQALLYCVALHR 1061


>gi|167620501|ref|ZP_02389132.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis Bt4]
          Length = 1253

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 126/1011 (12%), Positives = 276/1011 (27%), Gaps = 158/1011 (15%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
            +W      +  +      S+   +      ++ L   ++        + L    L    +
Sbjct: 242  IWRDERGVLDALLADAQPSLNQRSHKPDAVSEALDAWARYFEQASAVAALPRAALKLTQS 301

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
              +    +          +  +  +     +        +        T    L      
Sbjct: 302  SLEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRARWLSLVEQWLDTAPAELAQR--- 358

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ +  ++
Sbjct: 359  -KRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIFDTI 414

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                            LF VGD KQ+IYSF  A+                   +  +   
Sbjct: 415  FA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASARYT 454

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L ++ RST  I+   ++VF     A  L       +R         G+      V +   
Sbjct: 455  LAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDATDP 506

Query: 320  SQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDI 376
                     WT     D L +  +    A   A  I+ ++      +       + A DI
Sbjct: 507  LAGAGDFRVWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAASDI 566

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D   
Sbjct: 567  AVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGDLRR 622

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV------------ 484
                L S  F      ++++           +     +                      
Sbjct: 623  LRSALASDWFGLDAAALWRLEQGDAGPGGTEDAAGDASGNDGHARAAAAGAVAPPSADTD 682

Query: 485  ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFT 536
                ++       + +       +  +    +  ++ ++    E      + L E     
Sbjct: 683  AMGWVERFSRYRLLWRERGFAVMWRTLASELRIAERLMAGPDGERRVTDINHLAELTQAR 742

Query: 537  LRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +     +L+ L +   +      +    ++ N V+I+TVH +KGLE  +VF      
Sbjct: 743  ASAQPGIAPTLRWLAAQRFDGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLND 802

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                      +      +D+ G+ +                +   +    E  RL+YV +
Sbjct: 803  GGLREPPGSGLPDAREYHDESGVAVLHYGC--DEEAAERASREAAREQAAERARLVYVAL 860

Query: 656  TRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++     W A  
Sbjct: 861  TRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAVRWQALA 920

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK-------- 765
                     P+       +   +    +      +   +   I + S++ +         
Sbjct: 921  GGPVTLGALPVPARREPLEAGHDANATRAARRAKRGLRDAWRIASFSSLASAIARDESGV 980

Query: 766  -------------------------------------------GKTNLESLLSDNQTFNR 782
                                                        +   + +L+  +    
Sbjct: 981  ARAADDEMRPDHDALAAAVGADVLDAFDTLDAAGAIVEAAAIASEPAEDDILAFPRGAAA 1040

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------- 835
            G  +H+LL++                  +            L   +TRL+ +        
Sbjct: 1041 GECLHRLLELSDFSDASTWPPAAQRALHERPVEAEPALAGRLPAMMTRLVADLAATELVP 1100

Query: 836  --MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQI 871
               +         +E+           + +                      I G ID I
Sbjct: 1101 GMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFIKGFIDMI 1160

Query: 872  SISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
                   +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1161 VEHDGRFWIVDWKSNHLGTTPDAYGERALDAAMAHHAYHLQALLYTVALHR 1211


>gi|78186859|ref|YP_374902.1| exodeoxyribonuclease V, beta subunit [Chlorobium luteolum DSM 273]
 gi|78166761|gb|ABB23859.1| Exodeoxyribonuclease V, beta subunit [Chlorobium luteolum DSM 273]
          Length = 1203

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 120/991 (12%), Positives = 272/991 (27%), Gaps = 158/991 (15%)

Query: 15   LIYKDLW-PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
                 +W       VS +N    LS   G     +     ++          F   + F 
Sbjct: 221  RAAAGMWKQERALIVSILNDDAGLSRAAGAYKKEELILLFERMDAYLESGSVFDCFTGFE 280

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
                 + + N+  +             +     F    +        +  +    L +Y 
Sbjct: 281  RFTSASLRANMKKK------------YEAPVHRFFDAAEALLRELDLRLLVLKSELVRYY 328

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
             +     K++  V  F+DL+ +    L+  +    +   +       LIDE QDT  +Q+
Sbjct: 329  RSVLPRRKEELNVRLFDDLLTDLYLALEA-EGGGRLGEVLRSSYPAALIDEFQDTDPVQY 387

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            E+ R +            S   LF +GD KQ+IYSF GA+    L        +A  +  
Sbjct: 388  EIFRMIYA---------GSDLPLFLIGDPKQAIYSFRGADLFAYL--------KAAASVD 430

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RS   +L   + +F    N       +   +           T +    
Sbjct: 431  GDCRFTLEKNWRSAPLLLEGFNTLFLKGPNPFLYPGIAYRPVSSGGGGPRDPFTHE---- 486

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQ 372
                 +       ++  +    L  E++  + A  +A  I  ++G             + 
Sbjct: 487  DDRHPEPLQLWLLDARDAKNGCLTVEAAEEMAAAAVAGEIVRLLGDARAGKARIGDVPLA 546

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            A D+ V+VR       +    R       +  V      +       +++ L   +L   
Sbjct: 547  ASDMAVIVRTHLQAAKVHAALRA----RGVPAVMQSDRSVFLSPVAGEVLLLLEALLHPS 602

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
             +      L + +   + + I  +     E                   +   ++     
Sbjct: 603  SEGRIRSALVTTILGRTGNVIAALSADGEEWIAC--------------LRDFAQWNQLWR 648

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQELI 551
                      F       +  R++ ++R G +  +  +        ++E  S +  + L+
Sbjct: 649  TQGFMAMTRAFMR----KEGVRRRVLAREGGQRTLTDILHCFELLHQHEHTSNAGPEALL 704

Query: 552  SELEQY-------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            +   +            +     +   V+I+TVH +KGL+ P+VF        +      
Sbjct: 705  AWFSERCLDTTGSEDAYQMRLETDEAAVKIVTVHVSKGLQYPLVFCPYL----WKGSTST 760

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            K            +  +       +    D +    +    E  RL YV +TRA  +   
Sbjct: 761  KEVAAFHDASGEAVRDF------GSPGFPDGMLRAGEEAMAEDLRLFYVALTRAEHRCCF 814

Query: 665  CKHSNTSNEKKSNQRTW------------YDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
                 +      N                 + + ++      ++      ++ ++   A 
Sbjct: 815  ISARVSGGVSALNYLLHAGESVQERVAGAPERLLEAMEASSPLRMEADLRALAEESRGAV 874

Query: 713  EWSTHHPENTPLEREETIKQ---------------------LMDEQKIPKKLFSPIKNDI 751
             +     ++         K                       +       +     +   
Sbjct: 875  GFRLLTQDDLLRAALPAPKDDGSGAIGQNLRRFSGRIDSSWRVSSFTSFSRQGHRPQELP 934

Query: 752  NEPYILNPS-TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
            +     + S   DT    + E + +  +    GL +H++ + I                +
Sbjct: 935  DRDETASGSLPQDTVSTEDAEGIFAFPRGAKAGLFMHEIFEHIDFSAPDPLAIRKLVDTS 994

Query: 811  KNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEVSVSGK-------- 854
                 +  K    +   +  +L+ P         +         SE+             
Sbjct: 995  LQRYGYEPKWSDAVTGMVEGVLQMPLGEGEDPFRLGALQPGSWVSELEFFMPMSLLQTEA 1054

Query: 855  -----------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
                                   +       ++ G +D +  +    ++ ++K++H   +
Sbjct: 1055 LQNPLRRHGLMPEGADYRKLADSLEFQPATGMLLGFMDMVFEAGGRFWLLDWKSNHLGNR 1114

Query: 892  EIEHIPY---------THIAQLSIYEKILKD 913
              ++             +  Q   Y   L  
Sbjct: 1115 ASDYAQDGMEAAMEEHRYHLQYLFYLSALNR 1145


>gi|49184166|ref|YP_027418.1| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. Sterne]
 gi|65318602|ref|ZP_00391561.1| COG0210: Superfamily I DNA and RNA helicases [Bacillus anthracis
           str. A2012]
 gi|165872859|ref|ZP_02217485.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0488]
 gi|167636108|ref|ZP_02394413.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0442]
 gi|167641230|ref|ZP_02399484.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0193]
 gi|170686685|ref|ZP_02877905.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0465]
 gi|170708869|ref|ZP_02899303.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0389]
 gi|177654409|ref|ZP_02936306.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0174]
 gi|190568743|ref|ZP_03021647.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815925|ref|YP_002815934.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. CDC 684]
 gi|229183529|ref|ZP_04310753.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BGSC 6E1]
 gi|229601581|ref|YP_002865755.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0248]
 gi|254734022|ref|ZP_05191736.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Western North America USA6153]
 gi|254740289|ref|ZP_05197980.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Kruger B]
 gi|254753675|ref|ZP_05205710.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Vollum]
 gi|254758771|ref|ZP_05210798.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. Australia 94]
 gi|49178093|gb|AAT53469.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. Sterne]
 gi|164711436|gb|EDR16987.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0488]
 gi|167510871|gb|EDR86263.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0193]
 gi|167528462|gb|EDR91227.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0442]
 gi|170126185|gb|EDS95078.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0389]
 gi|170669208|gb|EDT19951.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0465]
 gi|172080693|gb|EDT65775.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0174]
 gi|190560159|gb|EDV14140.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004776|gb|ACP14519.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. CDC 684]
 gi|228599939|gb|EEK57535.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BGSC 6E1]
 gi|229265989|gb|ACQ47626.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. A0248]
          Length = 688

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 207/659 (31%), Gaps = 120/659 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 165 ILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L       
Sbjct: 224 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------ 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 275 ----SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 322

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 323 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 365

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 366 ------------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVS 398

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R ++      S   +L +   
Sbjct: 399 R---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYI 455

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 456 GRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKK 514

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 515 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQ 574

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 575 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 625

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|148244252|ref|YP_001218946.1| ATP-dependent DNA helicase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326079|dbj|BAF61222.1| ATP-dependent DNA helicase [Candidatus Vesicomyosocius okutanii HA]
          Length = 1056

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 149/897 (16%), Positives = 300/897 (33%), Gaps = 129/897 (14%)

Query: 64   ERFSLLSSFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            E +  LS   LT +   + ++        +    K  + K        +         + 
Sbjct: 265  EVWKNLSRLCLTVQGKWRSSLNKNNGFPAELKMQKLAIIKIFQSLSSHQQLRELLAGVEY 324

Query: 123  TL----------ASLTLAKYLNAHYEEAK---KKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                            +A+ L     + K     N   DF  + ++ +  L +  VS   
Sbjct: 325  LPDINFSTDQINVLQDIAQVLKLAVSQLKILFDVNQTHDFIQVSLDADQALDEYHVSDIA 384

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             + +D +I HILIDE QDTS+IQ+ ++  L  +++ G       +TLF VGD  QSIY F
Sbjct: 385  LF-LDNKIQHILIDEFQDTSVIQFSLLEKLIANWYSGDG-----KTLFLVGDPMQSIYLF 438

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
              ++    L+ +         A  K   ++L  +FRS+  ++   +++FS     Q  + 
Sbjct: 439  RQSQVGLFLQVRTR-----GIANIKPEFLQLHTNFRSSQSVVEGNNEIFSKIFPNQEEAY 493

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                   +  +                   ++       +   +            A+++
Sbjct: 494  KGAIKYEYSKAY----------------FTAESKRAINFYPFAYKRYD------FEAQQV 531

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
               I N                  K+I +LVR R     I  + +       I+      
Sbjct: 532  LKIIQN---------------NPTKEIAILVRNRSHLNNIVPVLK----QANINFEAVKI 572

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----TET 465
              L D L  +DL++L R ++   D L+++ +L++P      +D+  +             
Sbjct: 573  LPLKDDLFTRDLLSLTRALIYLGDKLAWLAILRAPWCGLLLEDLLVLSQNNERVIFDLIR 632

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
              + +Q  ++ G  +  +    +  +++     S        +          +    + 
Sbjct: 633  DDQTLQGLSSDGRIRVDNFAYVLGNIVNQQSRFSFTQVLEFAINQLVP----PNSLSVKQ 688

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              +  +FL      E      ++ +   L         + +  +  +++MT+H AKGLE 
Sbjct: 689  SMIKTQFLQIIYDCEFEQQLDIETINKML---DELYTPSVNVLNARIKLMTIHEAKGLEF 745

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             +V +   G    ++K         S       PI      + +     L     +  + 
Sbjct: 746  ELVIIPGLGRVSQNNKSPIIHLQEFSNQSLLLAPIRSYTQLNDSCTYVYLKHIKSQQDRF 805

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E  RLLYV MTRA  ++ +    + SN+   N                    +KL   I 
Sbjct: 806  ETMRLLYVAMTRAKYKIYLLATLSQSNQAIRN------------------TFLKLLEPIF 847

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
            ++ +   + S       P+   E ++ +   +       S  K +      L   ++   
Sbjct: 848  QNRFDQLKSSVIEDNKQPIRAPELVRYIKPIEYNNLLDRSKKKMNFQLNVDLQYKSL--- 904

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                             G+++H+       L    R+N                +  + +
Sbjct: 905  ----------------LGILLHQY--YANELFSPDRQNIRVRLVEFGISNMDIDDSIDFI 946

Query: 826  LSITRLL-ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
            + +  L  ++   +        ++V V       K++I     ID++ I +  +++ ++K
Sbjct: 947  IDMLNLTKQDKYFSWLFKQRVSTQVEVE--FINDKRNI----IIDRLFIDEGILWVIDFK 1000

Query: 885  THHHVPQE-----IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            T   V  E     I+     H  QL  Y+  L + Y    + C L   S  K+  I 
Sbjct: 1001 TERQVNNESIVQFIQRQKIKHSHQLLFYKVTLSECYSM-EVKCALYCPSVQKLIRID 1056


>gi|71065685|ref|YP_264412.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Psychrobacter
            arcticus 273-4]
 gi|71038670|gb|AAZ18978.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Psychrobacter
            arcticus 273-4]
          Length = 1495

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 133/952 (13%), Positives = 276/952 (28%), Gaps = 182/952 (19%)

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            +   +        ++     F   +   N  L  R      RY I       LIDE QD 
Sbjct: 489  IVLAVRDRLPIILEERGETTFSLQMARLNQALTGRQGEKLARY-IRHHYPVALIDESQDI 547

Query: 189  SLIQWEVIRSLT---------EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +  Q  +I S+           +         S   L  VGD KQ+IY F G +      
Sbjct: 548  NGEQAIMIESIYLPKSKRKQLANDKPLSTNKVSHEFLLLVGDPKQAIYGFRGGDVANYNY 607

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTTIRH 297
             K   +K         S+  L ++ RS A ++  ++  F +P    A+       ++I +
Sbjct: 608  MKAQFEKS--------SLWTLDINRRSNAGVIDALNCWFGMPTVTTAENKLAQLGSSIYY 659

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQ------ESWTSYFDSLPQESSASILARRIAY 351
            +  +  +      W   ++  +S    +             +D   +     I AR IA 
Sbjct: 660  QHIKADKPENQLSWFNDLTVQNSTLVTEILSAQPVSVLHLPYDKELEYDEHEITARHIAT 719

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                ++G+       K + IQ  DI VL R +KD   +      L     +  +      
Sbjct: 720  ----LLGSGQTL---KGKPIQPSDIGVLARTKKDLKRVEDELLKL----NVPTLTTSDVS 768

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE------- 464
            + + +  +D+ AL   +L          +L S L+  S   +  + T             
Sbjct: 769  IFETIMAEDVAALLSAMLYPYRHDMINRVLTSHLYGLSIKAVKAMMTDHESGVTESGDTI 828

Query: 465  --TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA-----KKGRQQF 517
              T        A      +Q  I Y+ +     Q          +L       +   Q  
Sbjct: 829  ISTHSNSTNVKAVDNKKSYQDFITYLKQAAQNWQHFGILSALHYLLDKNPVQPQGVWQAL 888

Query: 518  ISRF-GNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRAHS--ANHNEV 572
             +   G   I  L   ++   +       +  L      +E  P +           + V
Sbjct: 889  AAHPEGARHIMDLRHMMDVLAQYGIGMGEHELLAWFRQNIEAAPNSDWAKQYPLPTESGV 948

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            ++MT+H +KGLE P+V+++  G       + +   +           +    + ++    
Sbjct: 949  QLMTIHKSKGLEFPIVYVLGMGDASRKSGNKEDYGLYLYNAQQNPSALVQQSTSNQRRFS 1008

Query: 633  S---------DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                             +   +E  RL YV  TRAS+QL +      S      +  +Y 
Sbjct: 1009 PVKGSATTEGYYTDIETQEDFDELRRLGYVAFTRASEQLYVVLRDPNSKTGFELKPVFYW 1068

Query: 684  M-------------------------------------VYDSFHNDERVKKIKLTNSINK 706
                                                  +  +          +       
Sbjct: 1069 FDAPEAKFDLPDRLKGTIGMIRGHKVNEFYNDDTNAVGLAGNTTLATAKPITEAIEYAAF 1128

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             E +  ++     + +       + +      +  +      +      I++ S+  +  
Sbjct: 1129 SEVMKTDYFYGWAKTSFTALARQLDESTQALAVVDERMDDALDIDITESIVSFSSNQSLE 1188

Query: 767  KTNLESLLSDNQ-------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYC---------- 809
              +  SL S++          N G  +H++ + I    + +    I              
Sbjct: 1189 PVSDLSLKSEDDIRFTFVKGANAGTFLHEIFEKIDFSNKSQWSQVIDRAVSSYQLPLVYS 1248

Query: 810  --TKNAKLW----------------PAKEYKNLLLSITRLLENPMMT------TAMSCDS 845
               + ++L                  A +++ L+  I  +L+ P++       +  +   
Sbjct: 1249 SAEQQSRLLQAKKKEDSRPVDLNSIDATKHEALIGWIEEVLQAPLLASNQPLQSIHAEQR 1308

Query: 846  YSEVSVSGKINCPKKD------------------------------IIISGRIDQISISQ 875
            ++E+  +  ++   K                                 + G ID +    
Sbjct: 1309 FAELEFNMGLSESFKAQDINRLFQQYLPNEADKHVNLVPQNKTHLYRYLRGEIDLVYEHA 1368

Query: 876  QNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPNK 918
               ++ +YK+++             +       +  Q +IY+  L      +
Sbjct: 1369 GKYYVVDYKSNYLGNSLIDYDESTLKQAMSKAGYWLQAAIYQVALHRFLAMR 1420


>gi|240117506|ref|ZP_04731568.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID1]
 gi|268603206|ref|ZP_06137373.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID1]
 gi|268587337|gb|EEZ52013.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID1]
          Length = 1200

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 130/936 (13%), Positives = 267/936 (28%), Gaps = 160/936 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L +YLN+   E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETLARAVAENWEIALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +    +           +      +     
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKA 529

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKR 383
             ++                  A   A  I+  +   +    N K R +Q+ DI VLVR  
Sbjct: 530  NKDVL------------RRRAADYCADEIARALNEASGGRLNFKGRPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +I+   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMISAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                       + I Q       
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDIWQKYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +     K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +     +++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRTYACEKDGITMLKRNWRRVADNAPAGTDFAFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  GNADQAAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+         +++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +   ++ D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY----- 898
             EV  + +  I+    +  ++G ID +       I I +YK++H      + +       
Sbjct: 1083 PEVCRAAAETIDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQ 1142

Query: 899  THIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             +  Q  IY       +  +     ++    +++  
Sbjct: 1143 HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|302874502|ref|YP_003843135.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|307690889|ref|ZP_07633335.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|302577359|gb|ADL51371.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
          Length = 666

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 107/603 (17%), Positives = 193/603 (32%), Gaps = 119/603 (19%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            I+ + +     ++ E+  K     I +       ++         +       YE  KK
Sbjct: 110 GIVKKVLVTYMDEISEEKIKETLSTISLVKTSRNIEIEAVVKIDKDIFLRCYESYENYKK 169

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              ++DF+DL I   +L ++ +    I         HIL+DE QD   IQ E++  L   
Sbjct: 170 SKGLMDFDDLQIKILELFQEDE---RILNNYRNLFKHILVDEFQDCDGIQLEILLLL--- 223

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   +   +++AVGDE Q IY F G++P+ ++                   + L  
Sbjct: 224 --------NKANSVYAVGDEDQCIYGFRGSKPQCMVNFNETF--------NGGKKLYLST 267

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS  +I+    K+    +       ++  T +         G +++            
Sbjct: 268 NYRSNYNIVDTSMKLIEHNKERNKKVVEAFKTSK---------GEIEVSRP--------- 309

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                          +      +A  IA  + +                  KD  VL R 
Sbjct: 310 -------------YDENIQGEEIAISIAKKVVD-------------NSASYKDFAVLYRT 343

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             ++  I            I     D+     DH  IKD++A  R  + Q D  SF+ ++
Sbjct: 344 NNESRAIIDAF----LRKNIPFYLLDKEYNFFDHFIIKDVIAYLRLAIDQYDKESFLRII 399

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             P   FS+  + K+ +  ++ +      +            VI  +   I      S  
Sbjct: 400 NKPFRYFSKVSLEKVRSYSYKEDVFELLKKDQNIKTFQ--LKVIDNLKRDIQGLNKKSLQ 457

Query: 502 DFFTLILGAKKGRQQFISRFG------NEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                I+      +              EV+D+++EF   T      S   L + I E  
Sbjct: 458 GAIYSIINELNYGEFLTDYAAKFKIPVEEVMDIVNEFQEATKNI--TSILKLLDHIREYS 515

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
           +     K     N ++V + T+H  KG+E   V +++       HK+             
Sbjct: 516 EALENNKNKSMENEDKVILSTIHGVKGMEFKEVAIINCVEDSIPHKN------------- 562

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                        EE  RL YV +TRA + L +    N   + +
Sbjct: 563 -------------------------ADNVEEERRLFYVAITRAINNLYLYVPRNVKGKFR 597

Query: 676 SNQ 678
              
Sbjct: 598 EPS 600


>gi|225863179|ref|YP_002748557.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           03BB102]
 gi|225786754|gb|ACO26971.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           03BB102]
          Length = 688

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 207/659 (31%), Gaps = 120/659 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 165 ILKELR-LKDAYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L       
Sbjct: 224 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------ 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 275 ----SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 322

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 323 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 365

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 366 ------------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVS 398

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R ++      S   +L +   
Sbjct: 399 R---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYI 455

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 456 GRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKK 514

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 515 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQ 574

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 575 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 625

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|254669882|emb|CBA04366.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
            alpha153]
          Length = 1204

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 134/984 (13%), Positives = 284/984 (28%), Gaps = 171/984 (17%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE--KLKK 102
            +  +    L+Q + +  +    + L    L       +  + +     +    E  KL  
Sbjct: 271  SFAELFDALEQKALSPDLPFLEAKLHERLLKLASDKLEAGLKKGKTPDAAVFAELQKLAD 330

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             + +   + +      +       L L  YLN    E KK      F+DL+++ +  L  
Sbjct: 331  FRRDLDALEEAEEATIIRLQ----LDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTD 386

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               +  +   + +     LIDE QDT  +Q+E+ + +           +  R LF VGD 
Sbjct: 387  NPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---------IAQNRPLFLVGDP 437

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQ+IYSF GA+    L+                    L  ++RS A ++  +  +F + E
Sbjct: 438  KQAIYSFRGADIYAYLQAAED----------ARHRYTLATNYRSHAALIGSIGALFRLKE 487

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL--PQES 340
                L     + +   ++R              S+   +    Q  W    D+    ++ 
Sbjct: 488  RPFVLENIGYSEV--GAARAE------------SRLSPKRPAVQVRWLHENDNEKANKDV 533

Query: 341  SASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A   A  I+  +        N K   +Q+ DI VLVR   +  +++   +     
Sbjct: 534  LRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVRTHNEAVMVSAALK----K 589

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             ++  V   R  +        L AL  F L      +   +L S +F ++   +      
Sbjct: 590  RQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYNAQQLHDFNQN 649

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
              E     E                       +                       + +S
Sbjct: 650  ESEILHWAESA------------------RTALDNWNQYGIFAAMQQFSQTHGIETRLLS 691

Query: 520  RFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEV 572
            R     +    + L        +  + ++L + + +                  ++ + V
Sbjct: 692  RNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIRLESDEDLV 751

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +I+T+H +KGL+ P+V+         +     ++    +   +               + 
Sbjct: 752  KIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ---------LS 802

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY------ 686
             D  K        E  RLLYV +TRA +QL I    ++             +        
Sbjct: 803  EDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETV 862

Query: 687  ---DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP--- 740
                +   D      +    +  +     +++       P        Q  +        
Sbjct: 863  RRAYACEKDGIAMLKRNWQRVADNAPAGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPE 922

Query: 741  ------------------------KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                                    ++   P  +         PS  +T   ++  S+   
Sbjct: 923  RRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPS--ETPTASDGISIHDF 980

Query: 777  NQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
             +    GL +H++L+          ++  I     K    +       +        + P
Sbjct: 981  PKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYG--FEEIWLPAVAEMAEACRKTP 1038

Query: 836  -------------------------------MMTTAMSCDS--YSEV--SVSGKINCPKK 860
                                            +    + D     EV  + +  ++    
Sbjct: 1039 LTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTV 1098

Query: 861  DIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKI 910
            +  ++G ID +       I + +YK++H             +     + +  Q  IY   
Sbjct: 1099 NGFLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEAVAHHHYYLQALIYAVA 1158

Query: 911  LKDSYPNK-----SLVCLLIYVSE 929
                +  +     ++    +++  
Sbjct: 1159 AARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|317500583|ref|ZP_07958804.1| hypothetical protein HMPREF1026_00747 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898016|gb|EFV20066.1| hypothetical protein HMPREF1026_00747 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 608

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 108/562 (19%), Positives = 185/562 (32%), Gaps = 120/562 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   YE  +K    LDF+D+++   DL         +  +   +  +IL+DE QD + 
Sbjct: 161 RELYEKYEAQRKAVRKLDFDDMLVLCKDLFVSHPD---VLKQWQTKFKYILVDEFQDINR 217

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++VIR L                LF VGD+ Q+IY F GA+ + + R      +    
Sbjct: 218 VQYDVIRMLAL----------PENNLFVVGDDDQAIYGFRGADSEFMFRFSEDYPQ---- 263

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L +++RS+ +I+    KV    E        S                V +
Sbjct: 264 ----AKRIILNINYRSSGNIVKNSMKVIGHNEKRFLKEFQSV---------KENGFCVHV 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            E      +                          A+ +A  I                 
Sbjct: 311 QEVKDPNEE--------------------------AQYVADEIEKRAELG---------- 334

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFIL 429
           I  +++ VL R   D   +         + KI     +R   L DH   KD+ A  R  L
Sbjct: 335 ISYEEMAVLFRIHTDARPVAEEF----LERKIPFQMKERLPNLYDHFIAKDICAYFRLAL 390

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              +    + ++  P      D +          +  +E ++KF           I    
Sbjct: 391 GNIERNDLLQVMNRPKRYIGRDSVA-------SGKPSFEEMRKFYCDKEWML-DRIDQFE 442

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSSL 547
             + + +  +P+     I                  ID   L+E L       +  ++++
Sbjct: 443 WDVKMLRKTAPYAGINYIRKRIGYDDFLKDYAFTRKIDRANLNEVLAELEEAAR-PFATI 501

Query: 548 QELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +E    +E+Y   ++        +   VR+MT+H+AKGLE   VFLV+            
Sbjct: 502 EEWFRHIEEYTRLLRLKSMKRQEDREGVRLMTLHSAKGLEFDTVFLVEANEGKMP----- 556

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                           K    +  EE  RL YVGMTRA + L +
Sbjct: 557 ------------------------------YKKAKTDAETEEERRLFYVGMTRAKEVLKV 586

Query: 665 CKHSNTSNEKKSNQRTWYDMVY 686
                 + ++ S  R   +++ 
Sbjct: 587 SYVKTKNGKETSPSRFVDELLE 608


>gi|228899910|ref|ZP_04064151.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           4222]
 gi|228859689|gb|EEN04108.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           4222]
          Length = 688

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 107/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDSETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGDR---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + Q V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVQKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRITETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|254726268|ref|ZP_05188050.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. A1055]
          Length = 688

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 207/659 (31%), Gaps = 120/659 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 165 ILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L       
Sbjct: 224 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------ 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 275 ----SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 322

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 323 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 365

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 366 ------------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVS 398

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R ++      S   +L +   
Sbjct: 399 R---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYI 455

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 456 GRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNECI-DFIKFIKELEPKK 514

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 515 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQ 574

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 575 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 625

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|260588108|ref|ZP_05854021.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583]
 gi|260541635|gb|EEX22204.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583]
          Length = 623

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 99/600 (16%), Positives = 191/600 (31%), Gaps = 122/600 (20%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           +   +  D KE  +    E  ++++     + + S      + + +   Y    ++  +L
Sbjct: 123 KQRIEIEDEKEFFEGLVQEISQVKNNRIPLEHYYSKNCPDEIFRTIYCTYVNRCRQARLL 182

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++   DLLKK    A I     Q+  +IL+DE QD + +Q+++++ L        
Sbjct: 183 DFDDMLLYCYDLLKK---RANILAGWQQKFQYILVDEFQDINQLQYDIVKMLAA------ 233

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   LF VGD+ QSIY+F GA+P+ ++   +                 L  ++RST
Sbjct: 234 ----PQNNLFIVGDDDQSIYAFRGAKPEIMMHFPKDFPT--------VRTELLSCNYRST 281

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+    +V S  +N             H  +  G+   +++++    +          
Sbjct: 282 KKIVEAAGRVISCNKNRFKKKI-------HTENEEGKPVCIKVFDTQKQEEL-------- 326

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                                +   I                    +++ +L R      
Sbjct: 327 --------------------YVKDCIVKAYQEG----------CSYEEMAILYRTNSGAR 356

Query: 388 LITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                      +Y+I     D    + +H   +++++  +  +       F+ ++  P  
Sbjct: 357 F----LVETLMEYQIPFQMRDVMPNIYEHWIARNMISYIKLAMGDRSRKEFLQVMNRPNR 412

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             S   +             YE        G       I  + E +++ +  +P+     
Sbjct: 413 YISRAALEDTQVSFEALRWYYE--------GKDWLCDRIDKLEEDLYLLKNMTPYGAINY 464

Query: 507 ILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
           I       +              +  +VL+E           +Y    + + E  Q    
Sbjct: 465 IRKGIGYDEYLKDYAAYRKLKTEDFYEVLEELAESAKGY--KTYPEWFKHMEEYTQNLKE 522

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
             +        V I T+H+ KGLE   VFL+D       +                    
Sbjct: 523 QAKNQPVQRQGVIISTLHSIKGLEFDKVFLMDVNEGTIPYH------------------- 563

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                           K    S  EE  RL YVGMTRA  +L +        ++    R 
Sbjct: 564 ----------------KAATDSDIEEERRLFYVGMTRARKELSLFFIKERHEKQLEPSRF 607


>gi|332176248|gb|AEE25501.1| UvrD/REP helicase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1108

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 134/902 (14%), Positives = 270/902 (29%), Gaps = 150/902 (16%)

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKS-----PDLKEKLKKSQDEFIKIRDRFNTYKM 119
              + + +F  T++   +K+    +  K +     PD K   K+ ++  + +    +   +
Sbjct: 269  SLAAVKNFLFTKELKLRKSFTKAQGLKAASSFKDPDEKAAAKELKESAVALLSELSATPL 328

Query: 120  FKSTLASLTLAKYLNAHYE----------------EAK---KKNCVLDFEDLIINTNDLL 160
             +     L +        E                E     K     DF ++       L
Sbjct: 329  EEEGQIFLRICDPHYTESECSMLTSILEILPRLTGELLLAFKAKGECDFVEMQTAALRAL 388

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                       ++D  + HIL+DE QD S  Q ++++ LT  +          RTL+ VG
Sbjct: 389  GDETSPGKALLRLDNRLRHILVDEFQDCSPFQLKLLKRLTSGWL-----PDDGRTLYLVG 443

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D  QSIY F G++    +                 S+ +L  ++RS A ++  V++ F  
Sbjct: 444  DPMQSIYLFRGSDVGLFIGA-----AENGIGDIPLSVHQLTSNYRSQAGLIDWVNEKFEQ 498

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
              +   + + +     +  S   +                    + +             
Sbjct: 499  --SFGDIEDRNIGATTYNPSEACKP-------------------RIDDEAVSMTLYSGHG 537

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                 A+ I   I  +   +               I VL R R D   +    +  +  +
Sbjct: 538  WEQSQAKHIVNEIHKITNQEPD-----------ATIAVLGRTRSDLADVIEQMKANEVHH 586

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
                   D   LT    I DL AL R I    D  ++V +++SP    S  ++   CT  
Sbjct: 587  ----KAIDIHKLTTLSCITDLTALTRSICHLADKQAWVGLMRSPFVGLSLKELEIACTCA 642

Query: 461  HE-----------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
             E             +     +        + + V++ I +        S          
Sbjct: 643  GEQRARTKDVLLYNLSNERVQEALEPQSRDRLKVVLRVIRKSQSHLGRKSLDKIVKGAFY 702

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI-SELEQYPPTIKRAHSAN 568
            A  G      +          E         + +  S+       L ++  T+      +
Sbjct: 703  ALGGLSLLKDK---------SELRAIESFFAELAKMSIDTFSVDRLAEHVSTLYAPVEQS 753

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK-- 626
            + +V ++T H AKGLE   VF+      +             + +D     +        
Sbjct: 754  NGKVTVLTKHKAKGLEFDYVFIPHAHKPIRPSHTTLINFETITQDDAALAILSPDTKSTL 813

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
             +  +   +     +  Q+E  RL YV  TRA  ++ I       ++      +   ++ 
Sbjct: 814  EQTRMNHFIRALKTRKAQQEAIRLAYVACTRAKKKMFISG----ESKSIYPVSSMLGILS 869

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
             +      V                               +E I Q   E +        
Sbjct: 870  VTQGQCLEVS----------------------------SEQEFISQKSSEPRRALLSNPN 901

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDNQT-FNRGLIIHKLLQVIFTLPEHKRKNFI 805
             K       + +   I      NL ++    +     G+++HK ++ I  L       + 
Sbjct: 902  TKLLPEGDSLASFRGIIHTENENLPTMNWLKEGNRIIGIVVHKAIETIAHL---GWDTYF 958

Query: 806  TSYCTKNAKLWPAKEYKN---------LLLSITRLL----ENPMMTTAMSCDSYSEVSVS 852
             +  +K   LW  + ++           +  I   L    ++  M+  +  ++   + V 
Sbjct: 959  ANDLSKYRSLWRVQLFQEGLQESNLVYAIREIEYQLTKLKKSDYMSWVLQQEN---IEVE 1015

Query: 853  GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE-IEHIPYT----HIAQLSIY 907
              I       +    +D     +   ++ + KT      E  E         H  +++ Y
Sbjct: 1016 KPIYIKTLGKLKKYILDITFTVENTRYLIDTKTSRPEDGESHEEFAKRMLATHAEKMNSY 1075

Query: 908  EK 909
            +K
Sbjct: 1076 KK 1077


>gi|59800814|ref|YP_207526.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090]
 gi|59717709|gb|AAW89114.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090]
          Length = 1200

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 130/936 (13%), Positives = 267/936 (28%), Gaps = 160/936 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  + T      L L +YLN+   E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEETTMIRLQLDLIEYLNSSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +      + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +    +           +      +     
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKA 529

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKR 383
             ++                  A   A  I+  +   +    N K R +Q+ DI VLVR  
Sbjct: 530  NKDVL------------RRRAADYCADEIARALNEASGGRLNFKDRPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +I+   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMISAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                       + I Q       
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDIWQKYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +     K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +     +++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRTYACEKDGITMLKRNWRRVADNAPAGTDFTFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  GNADQAAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+         +++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +   ++ D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY----- 898
             EV  + +  ++    +  ++G ID +       I I +YK++H      + +       
Sbjct: 1083 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQ 1142

Query: 899  THIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             +  Q  IY       +  +     ++    +++  
Sbjct: 1143 HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|307256414|ref|ZP_07538196.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
 gi|306865044|gb|EFM96945.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
          Length = 1202

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 137/1010 (13%), Positives = 281/1010 (27%), Gaps = 168/1010 (16%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-- 58
            L     + L  + +    D+         +I++ +   +     T  KKA   +      
Sbjct: 211  LNGELAVHL-AALQHFLADVKRHWSAHGEEISRLIESELAKKYKTGEKKALNRRSYQTRY 269

Query: 59   TQCIEERFSLLSSFFLTQKFTPQ-----KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
             +         ++  L+     Q     +  + ++  + +  L         + +    +
Sbjct: 270  LEKWRASVDEWAASSLSCLPEEQFERFCQEFLNEKAEEGAEPLVHPHFAKNQQILTAYQQ 329

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                K              +     + K  +    F D++   N  L   +  A +  +I
Sbjct: 330  QFANKQKPLL--LYQFLLAVRTKLADYKATHSEKSFNDMLTLLNQAL-NAERGAELAAQI 386

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
              +    +IDE QDT   Q+E+   +            +      +GD KQSIY F GA+
Sbjct: 387  RAQFPFAMIDEFQDTDKEQYEIFHKIFMQETH------TNHGFIMIGDPKQSIYKFRGAD 440

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                L   +          Q      L  ++RS   I++V +++F  PE A+        
Sbjct: 441  IFTYLTASQ----------QAQQKRTLAKNWRSLPPIVSVTNRLFEFPEAAENSPFLYQG 490

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               H                  S        +          L  +    + A++ AY I
Sbjct: 491  IQFH------------------SVEAKASEAELIGADYVNCYLQAKFDEKLAAKQCAYQI 532

Query: 354  SNMIGTDTIFSNG--------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
               +        G        +    QAKDI +LVR      LI      L      SV 
Sbjct: 533  QQQLKQMEAGEFGLKFTNTTEEINAFQAKDIAILVRSHSQATLIKSALAELGIR---SVF 589

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             +++  +      K+L+ +    L+       +  L + L+  S  +I ++         
Sbjct: 590  LSEKESVYQSETAKELLWVLYACLNPYHQRHLLSALGTTLWGLSATEIHQLKNS------ 643

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
                          +    I Y                   +   +   ++  +   +  
Sbjct: 644  --------ELQWDEQVGRFITYQQIWQQQ----GILPMLHKLFMQEGIIERLRANPRDSD 691

Query: 526  ID-----VLDEFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVH 578
                    L E L   + + +N  + ++    +L +            +    ++I+T+H
Sbjct: 692  RRLTDLLHLTELLQNAMPSLENESALVRWYERQLAKTDSTEEHILRLESEEELIKIVTIH 751

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGL+ P+V+L   G +    K                                 +   
Sbjct: 752  GSKGLQYPIVWLPFIGKKNQGAKASNLAIYRDEQGQAH---------WYFGKPSEQVQAL 802

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE--------------KKSNQRTWYDM 684
            + +    E  RLLYV +TRA  QL +       +                  + +     
Sbjct: 803  MDREELAEDLRLLYVAVTRAESQLNLILPQRFEDGWNAVHYLLSNGEIGLDKSYKAEIST 862

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN----------------TPLEREE 728
                       + ++L   I  D+W    + +                     + L ++ 
Sbjct: 863  SEYLQQKGIDCQAVELDEKIANDKWRPAPFVSETLSAYHFSGQIQQTGLVTSFSALHQQH 922

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGL 784
                         K F     D ++  +L P T +     N E+          +   G 
Sbjct: 923  EWAMQHHTGYSMPKAFESAGQDYDQQQVLTPETDNLFALDNEETNAYSSYQFPHSTKVGN 982

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MT 838
            I+H   +      +      I + C +         ++ L     ++L  P+      + 
Sbjct: 983  ILHSFFEH-SDFQQAVDFEQILTICEQLG--LDENWHEPLQKWFEKVLATPLSETEFALK 1039

Query: 839  TAMSCDSYSEVSVSGKINCPKK--------------------------DIIISGRIDQIS 872
                    +E     ++                               +  + G +D I 
Sbjct: 1040 DVPITKRLNEWQFYLRLKNSDGLRKLNQLLKQYSAVSAKLPDLNLPQLEGYLRGFVDCIV 1099

Query: 873  ISQQNIFIFEYKTHHH-------VPQEIEHIPY--THIAQLSIYEKILKD 913
               +  ++ +YK++           Q +E       +  Q  +Y   L  
Sbjct: 1100 QVNEKFYLIDYKSNFLGYLAQDYSRQNLEKTIGQYRYDLQYLLYTLALHR 1149


>gi|228906962|ref|ZP_04070829.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           200]
 gi|228852710|gb|EEM97497.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL
           200]
          Length = 688

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 103/658 (15%), Positives = 205/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   +         +++ N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---- 556
              I+  K    +++         +   + E +   L      ++ +   +  ++     
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDAAIQG 575

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|218896262|ref|YP_002444673.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus G9842]
 gi|228964277|ref|ZP_04125396.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218541534|gb|ACK93928.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus G9842]
 gi|228795374|gb|EEM42862.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 688

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDSETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGDR---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRITETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|228938446|ref|ZP_04101055.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971325|ref|ZP_04131952.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977936|ref|ZP_04138316.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis Bt407]
 gi|228781724|gb|EEM29922.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis Bt407]
 gi|228788361|gb|EEM36313.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821183|gb|EEM67199.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326938953|gb|AEA14849.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 688

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 105/658 (15%), Positives = 206/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   +         +++ N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|301057782|ref|ZP_07198851.1| UvrD/REP helicase [delta proteobacterium NaphS2]
 gi|300448093|gb|EFK11789.1| UvrD/REP helicase [delta proteobacterium NaphS2]
          Length = 719

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 106/639 (16%), Positives = 200/639 (31%), Gaps = 121/639 (18%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           P   +  +            +        +  +     +  +    +  + + L   Y E
Sbjct: 128 PDLKMSDKPARFPKRGTLANIISKAANLEQPIEALMMNEFGQFMEVAPHI-QRLGKLYAE 186

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            KK + ++D++DLII    LL +      IR ++ ++  ++++DE QDT+ IQ +++R L
Sbjct: 187 YKKTHQLMDYDDLIIRFRQLLMENG---PIRKELGEQYRYVMVDEYQDTNCIQADIVRWL 243

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             D           + +  VGD+ QSIYSF GA  + +L                  II+
Sbjct: 244 AHD----------HQNVMVVGDDSQSIYSFRGANFRNMLDFPNAFP--------DTKIIK 285

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RST  IL + + +             +      +                     
Sbjct: 286 LEQNYRSTQPILALTNALMDFAGEKYTKCLFTKREGGEKP-------------------- 325

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                           +    +    A  I+  + N +   T          +  DI VL
Sbjct: 326 ---------------KVVDTHTEQEQATYISRYVRNAVSKGT----------RLNDIAVL 360

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R        +F          I  V    F   +   IKD +A  R +++ ++ +S++ 
Sbjct: 361 FR----AAYHSFELEAELTRQGIPYVKYGGFKFLESAHIKDFLAHMRVVVNPDETVSWLR 416

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYI-QKFANCGISKFQHVIKYIHELIHIAQFC 498
           +L+             I   +      ++           S  + +   +  L    Q  
Sbjct: 417 ILRLIKNIGQGKSQKIIKWMKENRIAPWDLCKWPKLGKRDSGLKPLGDLL--LRLSPQHL 474

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
           +P +  + ++       +            L++      R  +     L+  + +L   P
Sbjct: 475 TPVEAVSQVMAYYVPLLRERYDDYPRREKELEQLNPMAERYGK-----LRAFLDDLVLDP 529

Query: 559 PTIKRAH--SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
           P           + ++ + TVH+AKGLE PVVF++      F                  
Sbjct: 530 PGSTEDITRETTNEKLTLSTVHSAKGLEWPVVFVIWAMEGKFPS---------------- 573

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNT 670
                                +      EE  RL+YV  TRA D L+I          + 
Sbjct: 574 ------------------ARAYNNPDDLEEERRLMYVATTRAKDNLMISYPGSEIPAWSG 615

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             +      T+   +    +  E  K  +      K  W
Sbjct: 616 YGQGGEGLSTFISSLPPDVYGHESGKTGRFHARPEKLAW 654


>gi|255076889|ref|XP_002502109.1| ATP-dependent DNA helicase [Micromonas sp. RCC299]
 gi|226517374|gb|ACO63367.1| ATP-dependent DNA helicase [Micromonas sp. RCC299]
          Length = 907

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 112/798 (14%), Positives = 214/798 (26%), Gaps = 159/798 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVS--DINKYVSLSMETGNPTILK--KAQTLQQASQTQCIE 63
           +  E  E +   +      Q++    +   S  +      +    +        +     
Sbjct: 115 AAREMRERLVASVGEENARQITAGTFHSVASRMLRKHVHLLDGYGRGNDFVIYDEADTKS 174

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
               ++   F+  K      +    I+     +   +          R   +T    K  
Sbjct: 175 IIRKIMVDVFMEDKKKADPALAKSRISAAKSAVDACVGMDGRRM--ARALCDTRPSLKRD 232

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                    L   YE   + +  LDF+DL+     LL+  + +   R    Q   H+L+D
Sbjct: 233 PYIRDQFPRLYDEYEANLRSSNALDFDDLLSAAVALLRTSEEA---RLFYRQRWRHVLVD 289

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDTSL Q+E+IR+L  +             +F VGD  Q+IYS+ GAE   +   +  
Sbjct: 290 EFQDTSLSQYELIRALAAE----------TARVFVVGDVDQAIYSWRGAEVANI---RTK 336

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                  AG     + L  ++RSTA I+     V     +   L  D+            
Sbjct: 337 FDSDFAGAG----TVLLTKNYRSTATIVKAAQAVIGESRDRSPLELDAVR---------- 382

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
             G   +                                          I          
Sbjct: 383 -PGGKDVAVVATE----------------------------------DEIEEADFAAREA 407

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
           +   +  +  KDI VL R    +  +            +  V            IKDL+A
Sbjct: 408 ARAARSGVPLKDIAVLYRTHSQSRPLEEAF----IRAGVPHVVVGDTAFYTRKEIKDLVA 463

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR----------------------- 460
             R + +  D +S   ++ +P        + K+                           
Sbjct: 464 YLRVLFNSRDTVSLQRIINTPPRKIGPGTLEKLEAWAAGLPWVDGMPQPLGMALLDRTWS 523

Query: 461 ---HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               +           A          +  + EL    +   P      ++      +  
Sbjct: 524 TPDQDDLLPPAADMGLAAGAYKAVSGFVSVMRELGEAVEVSDPGALTEEVVRRIGFEEYV 583

Query: 518 IS-RFGNEVIDVLDEFLNFTLR-------------------------NEQNSYSSLQELI 551
                G+E +  + E ++                              +   ++ L E +
Sbjct: 584 ADMENGDERVGYVKELVSIASDPSAVESLDGVDGGGAAGGGDNGATKRKSTGHAGLGEFL 643

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             +        R+     + V++MT+H AKGLE   V +     ++   K          
Sbjct: 644 EGISLLMSAETRSEDEGADAVKLMTLHAAKGLEFDTVLITGCEDELIPFKRGD------- 696

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                         +  +E  RL YVG+TRA  +L +C+     
Sbjct: 697 -------------------------ASSDAAEHDEEVRLFYVGLTRAKRKLFLCRAFKRQ 731

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
              ++        +     +    K  +   +         + +T           +++ 
Sbjct: 732 RFGRTVYADPSPFLEVIRESLVGGKPPQARRAGMGINPAEDDANTDESPRRAALGSDSLA 791

Query: 732 QLMDEQKIPKKLFSPIKN 749
           + +      K        
Sbjct: 792 EHLRRTTGAKAATGGSPA 809


>gi|295702881|ref|YP_003595956.1| ATP-dependent DNA helicase [Bacillus megaterium DSM 319]
 gi|294800540|gb|ADF37606.1| ATP-dependent DNA helicase [Bacillus megaterium DSM 319]
          Length = 772

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 91/612 (14%), Positives = 193/612 (31%), Gaps = 108/612 (17%)

Query: 81  QKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           ++ I+ +   +   D K+    ++  +    ++     K  +          +L   YEE
Sbjct: 261 KEQIVKEAARELHVDEKDFPFDQALQQIGYWKNTLVGVKDVRPKDKWEQDVHFLYRRYEE 320

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            KK+  + DF+D++    ++LK+      +  +  +   + LIDE QD + +Q+++++ L
Sbjct: 321 VKKQKQLFDFDDMLYGCYEMLKQNPD---LLTRYQKRFRYFLIDEFQDINKVQYKIMKML 377

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
           +ED           + L  VGD+ QSIY+F G++P  +L  ++             ++I 
Sbjct: 378 SED----------SKNLCVVGDDDQSIYAFRGSDPSFILNFEKDFAN--------TTVIT 419

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS   I++  +KV +     +     +      R +                   
Sbjct: 420 LNQNYRSAHAIVSSANKVIARNTARRQKEMAAQFDNELRPT------------------- 460

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                    +   +D   +       A  I   +   I                 +  VL
Sbjct: 461 ---------FFFPYDEEEE-------ATMIVTDMKEKIKQG----------ASPTEFAVL 494

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  I          + I     D         ++ L++  R  ++  D  S   
Sbjct: 495 YRTHASSRAIFERLSQSNLPFSIE---QDADSFYKRRMVRSLLSFLRLSVNPNDASSLQD 551

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           ++ +      +  +  +       +  +    ++        Q  +K +  L    +  S
Sbjct: 552 LVNALF--LKKTAVNDLKAASILHDGTFIDALEYLQDLKPFQQKKLKKVIPLFKSLKSMS 609

Query: 500 PHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           P      I            R        +  D + +      +    +   L E +  +
Sbjct: 610 PSLALETISKDMGFDDFVKKRGNEGNMMEKGSDDVRDLKVVARKF--KTVPELLEHVDHM 667

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 +K      +  +++ T+H AKGLE   V+++ +      H              
Sbjct: 668 IAMNTEMKALSKQFNESIQLTTIHRAKGLEYKHVYVLSSVDGGLPHD------------- 714

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                              +  +       +E  RLLYV MTRA + L +        + 
Sbjct: 715 ----------------YALEAYRGGDDVPLQEERRLLYVAMTRAQNSLYLSVPQTRRGKT 758

Query: 675 KSNQRTWYDMVY 686
               R     + 
Sbjct: 759 AYPSRFLKSFIK 770


>gi|261415584|ref|YP_003249267.1| Exodeoxyribonuclease V [Fibrobacter succinogenes subsp. succinogenes
            S85]
 gi|261372040|gb|ACX74785.1| Exodeoxyribonuclease V [Fibrobacter succinogenes subsp. succinogenes
            S85]
 gi|302326087|gb|ADL25288.1| exodeoxyribonuclease V, beta subunit [Fibrobacter succinogenes subsp.
            succinogenes S85]
          Length = 1266

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 147/1016 (14%), Positives = 294/1016 (28%), Gaps = 205/1016 (20%)

Query: 47   LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK-----KSPDLKEKLK 101
             +    +  + +    E+  S L +   T   + +      +I K      + +    LK
Sbjct: 244  DENKDKIYYSEEISSGEKAISDLLNTIHTWDSSTKNPFTPTKIGKNITDVPNDEFGNALK 303

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLA----KYLNAHYEEAKKKNCVLDFEDLIINTN 157
               +   K+       +    +             L   +++ K       F D+I++ +
Sbjct: 304  YVHERISKLSKIKEALQEELDSYPLKKFLFDHIPELFDEWQKYKTDMKAQSFNDMILSVH 363

Query: 158  DL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
               L K    + ++ ++  +  + +IDE QDT+ +QW++  ++ +              +
Sbjct: 364  QAVLDKSKGESPLKTRLRAQYTYAIIDEFQDTNQLQWDIFSAVFDK-------------I 410

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F VGD KQSIYSF GA+     +  +               + L  +FRST  I+   + 
Sbjct: 411  FVVGDPKQSIYSFQGADVNVYQKAIQKINNG----------MSLKTNFRSTKGIIDGCND 460

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
            +F      +             S    + G V+   Q+  +  +     Q++      + 
Sbjct: 461  LF-NDSFFKPYEGSPKLVDFESSLSPDKEGQVKALPQINGKEVAPIWISQQNIDEIDFAQ 519

Query: 337  PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                        +      ++         K R +  KD  VL R R +   I    R  
Sbjct: 520  ATVQKIVEWCSFVGD--KTVLQVFDKKDCTKLRNVSFKDFAVLARTRSEMDEIEDAMRA- 576

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK----SPLFNFSEDD 452
                 +         L       + +AL + I + +       +L     +  F  S  +
Sbjct: 577  ---AGVPFSRYKDSNLFSSRECTEWIALFKAIDAPDFSAWNRRLLSEALITDFFRISYQE 633

Query: 453  IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
            I  + +         E      N    K       I+    + Q     +    I    +
Sbjct: 634  IEYVES---------EAFDDPENPVRKK-------INSWHELVQKRRYAEMLERIYSDTQ 677

Query: 513  GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH--- 569
              ++       + +  L +  N+ +    N   S+++L+  LE            +    
Sbjct: 678  IEERLTEISKLQNLAKLRQIGNYAVEYLYNHNCSIEDLVRHLEALASYNAGTDDEDGNLI 737

Query: 570  ------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  + V+IMT+H +KGLE P+V  V    Q                       ++  
Sbjct: 738  EKSTDYDAVQIMTIHASKGLEFPIVISVAGFKQKIKTDSGP--------------FLYHD 783

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN------ 677
            + + R    S   K   +   EE+ RL YV  TRAS  LI+ ++     +          
Sbjct: 784  KDEIRLGFGSIAKKRRAQEELEEWKRLFYVDFTRASSILILPRYEKWYGKDNVKEEFKFL 843

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
            + +  +++      D   K   +   + K E              PL  +     ++  +
Sbjct: 844  ESSINELIKADEKRDSDKKLTTVLPKLEKWEPKKLSDDVKTKILKPLNEKSGAGAVLTSE 903

Query: 738  KIPKKLFSPIKNDINEPYIL--------NPSTIDTKGKTNLESLL--------------- 774
            +I + +     N  +    L        + ST+  K  + +ES                 
Sbjct: 904  EIAQNIAQQKINMASLQKKLAGASIMQHSYSTLSGKADSQIESDDGNRPDRDDEEKTAAK 963

Query: 775  -----------------------------------SDNQTFNRGLIIHKLLQV------- 792
                                                  +  + G  +H++ +        
Sbjct: 964  TSTVKIRDIDTEAKNCTTAFNPKLNYQTNLNETAKKFPRGSHAGNALHRIFENTKFKQFG 1023

Query: 793  ---------------IFTLPEHKRKNFI------TSYCTKNAKLWPAKEYKNLLLSITRL 831
                           I  + E  ++  +       ++               L       
Sbjct: 1024 EENSTFEQALANPKTINLIEEEFKRESLPIWNHREAWLDIATHYTWNTLNARLPEIAGST 1083

Query: 832  LENPMMT--TAMSCDSYSEVSVSGKINCP-KKDIIIS-------------GRIDQISI-- 873
              +           D   EV  +   +    ++  IS             G ID + +  
Sbjct: 1084 TTSETFALTDIPENDHMPEVQFNQDASEETDENQAISETSASDILRRFCKGFIDLLFVRT 1143

Query: 874  --SQQNIFIFEYKTH------HHVPQEIEHIPYTHIAQ--LSIYEKI--LKDSYPN 917
              SQ+   I ++K+       +      E +   +  Q  L  Y  I  LK  Y  
Sbjct: 1144 VNSQKYYSILDWKSDMLENNVYTPEALKEKVDNDYSIQRVLYSYCLIQWLKQFYGK 1199


>gi|303326279|ref|ZP_07356722.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
 gi|302864195|gb|EFL87126.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
           3_1_syn3]
          Length = 766

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 127/787 (16%), Positives = 243/787 (30%), Gaps = 124/787 (15%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G++      L +         Q + +     LS   G          L++       E  
Sbjct: 48  GVAPTSILLLTFTRKAAQEMLQRAGMLLDQGLSGVQGGTFHAFAYGVLRRWRPAWLGERP 107

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINK----KSPDLKEKLKKSQDEFIKIRD--RFNTYKM 119
           F+++ S  +T      K+ +          K+  +   L K++++ + + +  R   + +
Sbjct: 108 FTVMDSADITAAVKYCKDELKLGRGDRSFPKTQSIVGLLSKARNKELSLEEVLRREAFHL 167

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
              T A   L       Y   +++  +LD++DL+     LL++   +A     +    +H
Sbjct: 168 LPHTEALAALG----EAYTAYRREKGLLDYDDLLFELETLLRENQAAA---EALRLRFSH 220

Query: 180 ILIDEVQDTSLIQWEVIRSLT---EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           IL+DE QDT+L+Q  ++R L         G  T S    + AVGDE QSIY+F GA  + 
Sbjct: 221 ILVDEYQDTNLVQARIVRLLAGPPGKDANGGETTSLTGNVMAVGDEAQSIYAFRGANVRN 280

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L   ++             II L  ++RST  +L V + + +    +   +  +     
Sbjct: 281 ILDFPKLFP--------GTRIIRLEENYRSTKPVLDVANSLLAHAAESFRKTLFT----- 327

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
               R      V+L   +                          S    A+ +   I  +
Sbjct: 328 ----RKEGGDPVRLVTPL--------------------------SDMSQAKLVVRRIEEL 357

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +GT               +I VL R    +  +        N   I          T+  
Sbjct: 358 LGTH-----------LPHEIAVLFRAGFHSYNLEMAL----NQAGIPFRKYGGLRYTEAA 402

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            +KD++A  R +L+  D  +F  +            + K+       +       + A  
Sbjct: 403 HVKDVIAYARLVLNPLDLPAFARVAALHS-GIGPKTVQKLYAVALGGD---AKAVEKAFA 458

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNF 535
                   ++++ +L    Q  SP   F  +L   + R +             L+E +  
Sbjct: 459 RHPDLLEDMRFVDDLRARPQ--SPAALFGAVLEHYRPRLESTYPEDWPRRQQGLEEIIQM 516

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            +   +     L   +++L    P      +     + + TVH+AKGLE   V ++D   
Sbjct: 517 AVGYSE-----LDLFVADLALESPEE--DENDGEGRITLSTVHSAKGLEWNAVLIIDLVE 569

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             F  +H                                     +    EE  RL+YV  
Sbjct: 570 DRFPSRHAL----------------------------------ARPEDFEEERRLMYVAC 595

Query: 656 TRASDQLIICKHSN--TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           TRA   L +   +   +  E+ S   +    V +                +++       
Sbjct: 596 TRARQDLELYAPAAIYSRAERGSLHVSQSPFVRELSPGLTEEWVEGFGGVLSRRGSCFSG 655

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                    P  R           +        +  +            D+       + 
Sbjct: 656 AGGVRGRLLPPARHAVPAFPGPAGEGTAFDDCQLLPESGSVSSFQAEVQDSADDATSPTA 715

Query: 774 LSDNQTF 780
            +     
Sbjct: 716 STSGTAR 722


>gi|189218921|ref|YP_001939562.1| ATP-dependent DNA helicase UvrD/PcrA [Methylacidiphilum infernorum
           V4]
 gi|189185779|gb|ACD82964.1| ATP-dependent DNA helicase UvrD/PcrA [Methylacidiphilum infernorum
           V4]
          Length = 636

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 103/557 (18%), Positives = 180/557 (32%), Gaps = 114/557 (20%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y E KKK  V D++DL+  T  L ++++    I         +IL+DE QDTS IQ + I
Sbjct: 181 YRERKKKLLVFDYDDLLFYTVKLFQEKE---NILKFYQSYFEYILVDEYQDTSRIQADFI 237

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L            S + +  VGD+ QSIYS+ GAE + +L   +              
Sbjct: 238 DLL----------GQSSQRVMVVGDDAQSIYSWRGAEIENMLNFPKRYPSTV-------- 279

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           +I +  ++RST +IL + +      +                  R  +    ++  Q++ 
Sbjct: 280 VINIKTNYRSTPEILALANAAIEGNQFQFPKEL-----------RAARKSLQEIKPQLLL 328

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                                   S ++ ++ IA  I +               I+AK++
Sbjct: 329 C----------------------YSTAVQSQVIAEFIEDFRKQG----------IEAKEM 356

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R       +           KI           +   IKD+ A  RF ++  D+ +
Sbjct: 357 AILYRAHFHALEMQLEL----TRRKIPFEITSGIRFFEQAHIKDICAFLRFFINPYDETA 412

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
           F  ++K          + ++  +   +    E   +        +   +    EL     
Sbjct: 413 FKRIVK-MFNGIGPKTLSQLWAEYLASSGSIE-KLRPPKAAEKSWMSWLDIHKELSSPGY 470

Query: 497 FCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
              P      IL G      + +       ++ ++E +NF                  L 
Sbjct: 471 AHQPSKQLERILHGVYADHLKMLYECYQRRLEDIEELINFASLYNSTE--------DFLA 522

Query: 556 QYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           Q                VR+ T+H AKGLE  VVF++     +F                
Sbjct: 523 QISLLTGVDTVQEQRGGVRLSTIHQAKGLEWKVVFIIMLCEGLFPSN------------- 569

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                      +  EE  RL YV  TRA D+L +C  +  S   
Sbjct: 570 ---------------------YSLNHPTLLEEERRLFYVAATRAKDRLFLCYPARRSFNN 608

Query: 675 KSNQRTWYDMVYDSFHN 691
           + +       + +   +
Sbjct: 609 RQSTYFPSRFLEELPKH 625


>gi|153814540|ref|ZP_01967208.1| hypothetical protein RUMTOR_00754 [Ruminococcus torques ATCC 27756]
 gi|145848034|gb|EDK24952.1| hypothetical protein RUMTOR_00754 [Ruminococcus torques ATCC 27756]
          Length = 608

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 107/562 (19%), Positives = 184/562 (32%), Gaps = 120/562 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   YE  +K    LDF+D+++   DL         +  +   +  +IL+DE QD + 
Sbjct: 161 RELYEKYEAQRKAVRKLDFDDMLVLCKDLFVSHPD---VLKQWQTKFKYILVDEFQDINR 217

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++VIR L                LF VGD+ Q+IY F GA+ + + R      +    
Sbjct: 218 VQYDVIRMLAL----------PENNLFVVGDDDQAIYGFRGADSEFMFRFSEDYPQ---- 263

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L +++RS+ +I+    KV    E        S                V +
Sbjct: 264 ----AKRIILNINYRSSGNIVKNSMKVIGHNEKRFLKEFQSV---------KENGFCVHV 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            E      +                          A+ +A  I                 
Sbjct: 311 QEVKDPNEE--------------------------AQYVADEIEKRAELG---------- 334

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFIL 429
           I  +++ VL R   D   +         + KI     +R   L DH   KD+ A  R  L
Sbjct: 335 ISYEEMAVLFRIHTDARPVAEEF----LERKIPFQMKERLPNLYDHFIAKDICAYFRLAL 390

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              +    + ++  P      D +          +  +E ++KF           I    
Sbjct: 391 GNIERNDLLQVMNRPKRYIGRDSVA-------SGKPSFEEMRKFYCDKEWML-DRIDQFE 442

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSSL 547
             + + +  +P+     I                  ID   L+E L       +  ++++
Sbjct: 443 WDVKMLRKTAPYAGINYIRKRIGYDDFLKDYAFTRKIDRANLNEVLAELEEAAR-PFATI 501

Query: 548 QELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +E    +E+Y   ++        +   V +MT+H+AKGLE   VFLV+            
Sbjct: 502 EEWFRHIEEYTRLLRLKSMKRQEDREGVHLMTLHSAKGLEFDTVFLVEANEGKMP----- 556

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                           K    +  EE  RL YVGMTRA + L +
Sbjct: 557 ------------------------------YKKAKTDAETEEERRLFYVGMTRAKEVLKV 586

Query: 665 CKHSNTSNEKKSNQRTWYDMVY 686
                 + ++ S  R   +++ 
Sbjct: 587 SYVKTKNGKETSPSRFVDELLE 608


>gi|322711061|gb|EFZ02635.1| putative ATP-dependent DNA helicase [Metarhizium anisopliae ARSEF
           23]
          Length = 992

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 86/577 (14%), Positives = 173/577 (29%), Gaps = 152/577 (26%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y++   ++ +LD++DL++   +LL++              +  +LIDE QDT+ IQ+
Sbjct: 176 YTAYQDHLARSNLLDYDDLLVRCVELLQEHPSCV-------SNVQAVLIDEYQDTNGIQY 228

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           ++++   +          + + +  VGD  QSIY +  AE K + R  R   +       
Sbjct: 229 DLMKLFAQ----------ARQRITIVGDPDQSIYGWRSAEIKNLYRLLRDYPETDE---- 274

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I L  ++RS+  IL +  +V                T   +               
Sbjct: 275 ----ISLEENYRSSQLILDMSLQVIQQDSKRYQKVLLPVHTKGTKPV------------- 317

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 L +  S+S     I   +   I             I+ 
Sbjct: 318 ----------------------LRRLKSSSREGEWIVSELRRAI-------TMFGGAIKN 348

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           +D+ +L+R    +  I            IS          +   IK L+   R +     
Sbjct: 349 EDVAILLRSAYLSRHIESAL----GKAGISYRMIGGHKFYERKEIKILLDYLRVVYQPNM 404

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETE----TVYEYIQKFANCGISKFQ------- 482
           + +   ++  P     E  I  +  +   ++     +     +      +K +       
Sbjct: 405 NDALARIINVPRRGIGETTIKSLLEEAEMSKLSLWALLWRHCRGGRRATTKLRPNMEQKL 464

Query: 483 --HVIKYIHELIHIAQ------FCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDE 531
              +++ +  L    +        S  D    ++     ++   + +     +    + E
Sbjct: 465 NTELLRIVSSLRQSMEDIIAGGSMSLVDLIEQLISQLSFKKYLEAEYQEDHEQRWANVQE 524

Query: 532 FLNFTLRN--------EQNSYSSLQE------------LISELEQYPPTIKRAHSANH-N 570
            L+             E+ +   ++              ++ +             +  +
Sbjct: 525 LLSLANDFVRDYDNEGEEEALPEIENLDQVKDNDILGKFLANVALASDAQSGDKEQDKAS 584

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V I T+H +KGLE PVVF+         H                              
Sbjct: 585 QVTISTIHASKGLEWPVVFIPSVYGGSIPHS----------------------------- 615

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                    +    +E  RLLYV MTRA   L +   
Sbjct: 616 ---------RAEDMDEERRLLYVAMTRAKALLYLSCP 643


>gi|240145521|ref|ZP_04744122.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82]
 gi|257202338|gb|EEV00623.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82]
          Length = 613

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 107/553 (19%), Positives = 188/553 (33%), Gaps = 122/553 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           T+ + +   Y E   KN ++DF+D+++ T +L ++    A I      +  +ILIDE QD
Sbjct: 157 TVFRKVYRQYHEFLYKNRLIDFDDMLVYTKELFEQ---RADILAAWQNKYRYILIDEFQD 213

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + IQ+++I+ L  +           + LF VGD+ QSIY F GA+P+ +L  K      
Sbjct: 214 INRIQYDIIKMLAGE----------RKNLFIVGDDDQSIYRFRGAKPEIMLHFKDDYP-- 261

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +   + L +++RS  +I+T    +    +                         
Sbjct: 262 ------EAEKVLLDVNYRSVKNIVTSAGYLIGHNKERFQK-------------------- 295

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       +        W  +     + +       RI + I   +          
Sbjct: 296 --------KIEAADQGDIPVEWQLFESQRKENA-------RIIWDIQEAVEKG------- 333

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
               + ++  VL R          L      +Y I     D    L +H   KD+ A  R
Sbjct: 334 ---AKYEEFAVLFRTNTQPR----LLMEQLMEYNIPFRTRDTVPNLYEHWIAKDIFAYIR 386

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             L   +   F+ ++  P    S + + +        E  YE                I+
Sbjct: 387 IALGSRERRDFLQIMNRPKRYISRESLDEETVAFDVWEWYYE--------EQPWVAKRIE 438

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKG------RQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +   I + +  SP+     I  A            +     +++ DVLDE L+      
Sbjct: 439 KLEGDIRMLERLSPYAAINYIRKAIGYDEFCTEYADYRRIKADDLFDVLDELLDAAREY- 497

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             +Y +  + I    +      R  + N N V + T+H+AKGLE   V+++D    V   
Sbjct: 498 -KTYDAWFDHIENYTKELQEFYRVQNQNPNSVALATLHSAKGLEYENVYIIDVNEGVMP- 555

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                               K + +   EE  R+ YVGMTRA  
Sbjct: 556 ----------------------------------YKKAVLEPEVEEERRMFYVGMTRAKK 581

Query: 661 QLIICKHSNTSNE 673
            L +      +++
Sbjct: 582 NLHLFSVRQLNHK 594


>gi|317153565|ref|YP_004121613.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943816|gb|ADU62867.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
          Length = 1055

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 133/958 (13%), Positives = 275/958 (28%), Gaps = 116/958 (12%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ----- 55
            +++R G           +D           I   ++++      ++      + +     
Sbjct: 187  VRDRLG-----RLTTFLRDQSGPIETDQETIKGMLAVAHAGFQRSVAAMRGHIAESGMPA 241

Query: 56   ------ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
                            F  +    L QK T    ++ +         +      Q+ +  
Sbjct: 242  HANFMKFLMKCESMALFDEVPDSTLIQKPTFADCVLAKGKGLVDARSESFYFHLQEAWKT 301

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                            ++ +A+ L       +K+  ++    L    NDLL+  D  +  
Sbjct: 302  FGADHAVLSGAYFLAPAIAIAQRLLNGLATLQKQRGLVLGSALAGFVNDLLQHGDAVSEA 361

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              ++   ++H+L+DE QDTS  QW+ +  L ++            +LF VGD KQ+IY +
Sbjct: 362  YCRMGCRLHHLLVDEFQDTSREQWQAVTPLAQECLAKGG------SLFYVGDIKQAIYGW 415

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             G +           Q    +     +   LP ++RS  +++   +  F   ++     E
Sbjct: 416  RGGDSALFGEVMT--QPDLASLALTTASDTLPDNWRSFENVVAFNNAFFGNLQDPDLTRE 473

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
             + T                L         S       +         +   A  +  + 
Sbjct: 474  LADTIFTAAPDDFRADFATDLTRTFDGCAQSVPQKNAGTGGYVRMERLEGGKADEVEEQT 533

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
               +  ++   T          +  +I VLVR      L+      L     I V+    
Sbjct: 534  LDALGTLMDQLTARR-------RFGEIAVLVRSHDHAGLVCD----LLVSKGIPVITEKS 582

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              L  H  ++ L A   F+    DD++F+                 I         +   
Sbjct: 583  LQLDRHPLVRQLAAFLAFLDFPRDDVAFLTFASGEELFL---AEAGITQAEFHDWLMRPR 639

Query: 470  IQKFANCGISKFQHVIKY-IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
             +         F    +  I    + +   +P+D     +   +  ++       +    
Sbjct: 640  KRPLGVQFREDFPEHWQRFIEPFYNQSGLMTPYDLTREAMRVFRALER-----HPQAELY 694

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            L  FL      E+N Y SL   +          K     N + VRIMT++ AKGLE PVV
Sbjct: 695  LRRFLEVVHLAEENGYGSLSAFLEYWSGKSAEEKVPLPENIDAVRIMTIYKAKGLEFPVV 754

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
             +       ++    K   I          P+           +          T  E  
Sbjct: 755  IVPFHN---WTADTDKDYEIRQFKGARLLTPLKKG--------LGKPYHASLGRTVREQL 803

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQ-RTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             LLYV  TRA ++L        +          + D+         +      T   +  
Sbjct: 804  NLLYVAWTRAREELYGFFTEKPATSPALAAMHLFLDLDGSGLFERGQRPAEVTTTRTHAP 863

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
              +         +   +     + +L   +    + F   +                   
Sbjct: 864  AALPASPLAARTDQDGVRLMGWLPRLRVYRHHLDEYFYNERM------------------ 905

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                          RG + H+ ++ +  T  +    +       ++     A     L+ 
Sbjct: 906  --------------RGEVAHRAMEHLRVTGHQEADSDRAVRLAMRDFPALDALPPDELVR 951

Query: 827  -------SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
                        L    +   ++           ++           R+D +   +  + 
Sbjct: 952  LETDLRAMTLWALGQDNLCQWLATGQR-----EPEVMDTDGSFK---RLDLLHRGESTV- 1002

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN--KSLVCLLIYVSEPKVFII 935
            + ++KT    P+  E +          Y +IL++  P   + +   L+Y+   ++  +
Sbjct: 1003 VADFKTGQPSPKNREQVFD--------YMRILEEM-PGTARPVHGYLVYLDLREIHRV 1051


>gi|240127764|ref|ZP_04740425.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-93-1035]
 gi|268686157|ref|ZP_06153019.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
            SK-93-1035]
 gi|268626441|gb|EEZ58841.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae
            SK-93-1035]
          Length = 1200

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 129/936 (13%), Positives = 266/936 (28%), Gaps = 160/936 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L +YLN+   E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +      + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLTTNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +    +           +      +     
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKA 529

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKR 383
             ++                  A   A  I+  +   +    N K R +Q+ DI VLVR  
Sbjct: 530  NKDVL------------RRRAADYCADEIARALNEASGGRLNFKGRPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +I+   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMISAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                       + I Q       
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDIWQKYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +     K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +     +++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRTYACEKDGITMLKRNWRRVADNAPAGTDFAFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  GNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+         +++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +   ++ D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY----- 898
             EV  + +  ++    +  ++G ID +       I I +YK++H      + +       
Sbjct: 1083 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQ 1142

Query: 899  THIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             +  Q  IY       +  +     ++    +++  
Sbjct: 1143 HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|196042381|ref|ZP_03109647.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           NVH0597-99]
 gi|196026788|gb|EDX65429.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           NVH0597-99]
          Length = 688

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 207/659 (31%), Gaps = 120/659 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 165 ILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L       
Sbjct: 224 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------ 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 275 ----SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 322

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 323 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 365

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 366 ------------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVS 398

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R ++      S   +L +   
Sbjct: 399 R---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYI 455

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 456 GRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKK 514

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 515 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFISDAIQ 574

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 575 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 625

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|91793704|ref|YP_563355.1| exodeoxyribonuclease V, beta subunit [Shewanella denitrificans OS217]
 gi|91715706|gb|ABE55632.1| exodeoxyribonuclease V, beta subunit [Shewanella denitrificans OS217]
          Length = 1355

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 132/973 (13%), Positives = 273/973 (28%), Gaps = 195/973 (20%)

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
             ++   +   D+ N           L   + +   +   K +  ++  +DL+ N    L 
Sbjct: 333  AAEAPLLAHFDQINALINNFIPAFLLRAKEGIKQRFMAQKHQRNLMAPDDLLSNLASALD 392

Query: 162  KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT------ 215
                   +   I Q     LIDE QDT  +Q+ +   +                      
Sbjct: 393  ANP--DTLASAIGQRFPVALIDEFQDTDPLQFNIFSKVYGKASSPSQEQLQAPNTATGLS 450

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            L  +GD KQ+IY+F GA+    ++ +                  L  +FRS+ +++  V+
Sbjct: 451  LLMIGDPKQAIYAFRGADIHTYIQARNQTPAHYN----------LATNFRSSENLVLGVN 500

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            ++F+  ++          +++  SS   +       + + +Q        +         
Sbjct: 501  RLFAQHKDPFINQAIPFDSVKTPSSAAEK-------QLIGAQISKAALQIKLLAEDAEFG 553

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFS------NGKKRVIQAKDILVLVRKRKDTPLI 389
            L +  +   LA   A  I  ++             N   R ++AKDI VLVR R +    
Sbjct: 554  LNKTQARQHLAADAASEIRQLLTQAQQGECQLSESNKPPRPLKAKDIAVLVRDRNEAA-- 611

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
              + +   N  +I  V   R  + D L  ++L+ L R + + +D+      L + L  + 
Sbjct: 612  --VIKAALNARQIGAVFLSRDSVFDTLEARELLLLLRALANPKDERLLRAGLATELMGYD 669

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGIS--------KFQHVIKYIHELIHI------- 494
               I          +T+      +                 +    I   +         
Sbjct: 670  ALQIHSFNQDEDSRQTLLSQFYHWHQLWQRQGVMPALLALANWSGLIPRFLAKGSTKDFL 729

Query: 495  -----------------AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                             A   +    F       +  +             L E L    
Sbjct: 730  AKGSANNSQNDSHNNSAAPQSTSATEFDTEQDETQPSELASGERRLTDFRHLCELLQQKA 789

Query: 538  RNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                 S + +     +L         +    +  N V+I+T+H +KGLE PV F+     
Sbjct: 790  TELDGSAALINWFEQQLIAANTTDEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSL 849

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                ++    +           I           +   + ++  +++   E  RLLYV +
Sbjct: 850  ARGGNRRPSPILYHKEGQLIWDI-----------HDTDEGLESYQQAHLAEDLRLLYVAL 898

Query: 656  TRASDQLII---------------------CKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            TR   +  +                       +   + +KK +       V     +   
Sbjct: 899  TRPVFRCYLYIANQCRQLKGGVSSQLAETGIGYLLGAKDKKVDFSFIQGAVQAITADIPA 958

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPL-------------------EREETIKQLMD 735
            ++   ++ + +       + + HH     L                   +  E +    D
Sbjct: 959  IEVSLVSENPDTQVLKNNDDNDHHLAPKTLTRGYQTPWRVGSYSGLVKHQAHEKVSPGAD 1018

Query: 736  EQKIPKKLF--------SPIKNDINEPYILNPSTIDTKGKTNLESLLSDN---------- 777
            +++   +L           I  +      L P+ +D     +    L +           
Sbjct: 1019 DEEFTDELTLHFIEQEAHEILPEHLADKALTPAPLDEPEPLDGPVPLDEPVPLDEPAPLD 1078

Query: 778  -----QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                 +  N G  +H +L+         + +        +         + L      ++
Sbjct: 1079 RFSFERGANAGSFMHLVLESFDFSQYQSQLSDAIRDAMVHYGFDAELWLEPLTTWYQEIV 1138

Query: 833  ENPMM----------------TTAMSCDSYS------EVSVSGKINCPKK---------- 860
              P++                    S    +      E+     I+              
Sbjct: 1139 TTPLLIPEQTPRNTQFAASQQQRRFSLSELNPSKIKVEMEFYLPISALGSLALNKLLQSH 1198

Query: 861  -----------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE--------HIPYT-H 900
                         ++ G ID     Q   FI +YK++H      +         +    +
Sbjct: 1199 GYQAQLSFDTLRGMLKGFIDLTFEYQGQFFIADYKSNHLGNSLEDYQMANMAKAMDEHQY 1258

Query: 901  IAQLSIYEKILKD 913
              Q  IY   L  
Sbjct: 1259 HLQYIIYTLALHR 1271


>gi|331082324|ref|ZP_08331450.1| hypothetical protein HMPREF0992_00374 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400810|gb|EGG80411.1| hypothetical protein HMPREF0992_00374 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 623

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 99/600 (16%), Positives = 190/600 (31%), Gaps = 122/600 (20%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           +   +  D KE  +    E  ++++     + + S      + + +   Y    ++  +L
Sbjct: 123 KQRIEIEDEKEFFEGLVQEISQVKNNRIPLEHYYSKNCPDEIFRTIYCTYVNRCRQARLL 182

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++   DLLKK    A I     Q+  +IL+DE QD + +Q+++++ L        
Sbjct: 183 DFDDMLLYCYDLLKK---RADILAGWQQKFQYILVDEFQDINQLQYDIVKMLAA------ 233

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   LF VGD+ QSIY+F GA+P+ ++   +                 L  ++RST
Sbjct: 234 ----PQNNLFIVGDDDQSIYAFRGAKPEIMMHFPKDFPT--------VRTELLSCNYRST 281

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+    +V S  +N       +                       + + D+Q   +  
Sbjct: 282 KKIVEAAGRVISCNKNRFKKKIHTENEEGK--------------PLCIKEFDTQKQEEI- 326

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                                +   I              ++    +++ +L R      
Sbjct: 327 --------------------YVKDCI----------LKAYQKGCPYEEMAILYRTNSGAR 356

Query: 388 LITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                      +Y+I     D    + +H   +++++  +  +       F+ ++  P  
Sbjct: 357 F----LVETLMEYQIPFQMRDMMPNIYEHWIARNIISYIKLAMGDRSRKEFLQIMNRPNR 412

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             S   +             YE        G       I  + E +++ +  +P+     
Sbjct: 413 YISRAALEDTQVSFEALRWYYE--------GKDWLCDRIDKLEEDLYLLKNMTPYGAINY 464

Query: 507 ILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
           I       +              +  +VL+E           +Y    + + E  Q    
Sbjct: 465 IRKGIGYDEYLKDYAAYRKLKTEDFYEVLEELAESAKGY--KTYPEWFKHMEEYTQNLKE 522

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
             +        V I T+H+ KGLE   VFL+D       +                    
Sbjct: 523 QAKNQPVQRQGVIISTLHSIKGLEFDKVFLMDVNEGTIPYH------------------- 563

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                           K    S  EE  RL YVGMTRA  +L +        ++    R 
Sbjct: 564 ----------------KAATDSDIEEERRLFYVGMTRARKELSLFFIKERHEKQLEPSRF 607


>gi|206603905|gb|EDZ40385.1| Putative exodeoxyribonuclease V, beta subunit [Leptospirillum sp.
            Group II '5-way CG']
          Length = 1095

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 141/941 (14%), Positives = 280/941 (29%), Gaps = 158/941 (16%)

Query: 36   SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK-FTPQKNIITQEINKKSP 94
               ME          + L      +  E     +      ++      +    ++ +  P
Sbjct: 209  EEVMEQYRARRQTFREALGIVFPERSREVLPHRVRDLLGDREIPALGLSYDDADLGETFP 268

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK-NCVLDFEDLI 153
              ++ L++     ++         + +   +S         H E  +++   +  ++DLI
Sbjct: 269  PGEDALRELLGRTLQS-----ARDLQEVIRSSFRDLAGTWKHRELREREVRGIATYDDLI 323

Query: 154  INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            +   D L++  V+     ++        +DE QDTS  Q  +   +  D   G       
Sbjct: 324  LRVADSLERESVAQ----RLRDRFPVAFVDESQDTSRDQSGIFARIYRDPRPGSA----- 374

Query: 214  RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
              LF +GD KQSIY F GA+    L   R          +    + L +++RS+  +L  
Sbjct: 375  --LFWIGDPKQSIYRFRGADVGAYLEFSRQ--------AKSSPPLRLSVNYRSSPGVLHA 424

Query: 274  VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            V+++F    +   L   S       S R       +L +   S       P +       
Sbjct: 425  VNRLFGRHPSPFLLEGVSYHPSSPVSGRK-----PELVDPAFSGSCFLVYPGRGPKDKLD 479

Query: 334  DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
            D           AR  A  +  ++    + ++   R + A DI VLV K  D   +    
Sbjct: 480  D----------FARVTADEVDRLLSGKILLND---RPLAASDIAVLVPKNDDGERVAGFF 526

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            R       I         +       ++  +   +LS          L + LF +    I
Sbjct: 527  RE----RGIPYNSASPGSVFHTHEADEIATVLDALLSPWRMPVLCLALGTGLFGWDARRI 582

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
              +     +   V E   + +                   + +       F  +      
Sbjct: 583  DGLVRDPEQARPVQEVFLEAS------------------RLWRTHGIRAAFRELFFRMGV 624

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHSANHN- 570
              + +S         +D  ++   +      +        S     P       +     
Sbjct: 625  WTRLLSAGRT--RQRIDRLVDRIEKAAGQFPTPPDQHRFFSRARLSPEGESHEETVGGEP 682

Query: 571  --EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
               V I+TVH +KGLE PVVF+          K  K+       + +             
Sbjct: 683  GTGVHILTVHKSKGLEFPVVFVPFG----IPEKTRKEEEAFREEDGED------------ 726

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                         S Q E  RLLYV +TRA +++ +    N   +   +     D   + 
Sbjct: 727  -------------SDQSESLRLLYVALTRARERVYLFCPLNRKKQSALDHLLETDRHLEG 773

Query: 689  FHNDERVKKIKLT--NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                   +K       ++ +        S   P  +  ER     +   + +    + S 
Sbjct: 774  RREKTVTEKRFFAMREALEEAFSGVDGVSFFEPRESSGERNHKTPKEQGKVEDEIVVRSL 833

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDN--------------------QTFNRGLII 786
                     + + + I  +G+ +     +D                          G+ +
Sbjct: 834  AHPLPVPRRVTSFTAIVARGEDSDAWNGTDPLIGDEDGEDLSGNLVERPGAAGRAFGVFV 893

Query: 787  HKLLQ----VIFTLPEHK----RKNFITSYCTKNAKLWPAKEYKNLLLSITRL----LEN 834
            H +L+     I    + K     +  +  +   +    P+ E      S   L    L  
Sbjct: 894  HGVLEEAGKWIVRYKKAKKISPSRADVREWLRSSFPSRPSDEVGGWTASALELAEQGLCT 953

Query: 835  PM-------MTTAMSCDSYSEVSVSGKINCPKKDII------ISGRIDQISISQQNIFIF 881
            P+       +   +   S  E     ++   +          + G ID +  S + +++ 
Sbjct: 954  PLIPISGLPLADLLDDRSRFEEPFLLRLPDEENAGEREVASHLRGVIDVVVWSGKTVYLI 1013

Query: 882  EYKTHHH-------VPQEIEHIP--YTHIAQLSIYEKILKD 913
            +YKT+          P+ +E +   + +  Q  IY    + 
Sbjct: 1014 DYKTNFLTAEGNPYAPESLERVLSDHRYDLQARIYSGACRR 1054


>gi|240080267|ref|ZP_04724810.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA19]
 gi|240123060|ref|ZP_04736016.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID332]
 gi|268596417|ref|ZP_06130584.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae FA19]
 gi|268681687|ref|ZP_06148549.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID332]
 gi|268550205|gb|EEZ45224.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae FA19]
 gi|268621971|gb|EEZ54371.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID332]
          Length = 1200

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 131/936 (13%), Positives = 266/936 (28%), Gaps = 160/936 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  + T      L L +YLN+   E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEETTMIRLQLDLIEYLNSSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +      + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +    +           +      +     
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKA 529

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
             ++                  A   A  I+  +        N K R +Q+ DI VLVR  
Sbjct: 530  NKDVL------------RRRAADYCADEIAHALNEASGGRLNFKGRPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +I+   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMISAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                       + I Q       
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDIWQKYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +     K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +     +++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRTYACEKDGITMLKRNWRRVADNAPAGTDFAFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  GNADQAAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+         +++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +   ++ D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY----- 898
             EV  + +  I+    +  ++G ID +       I I +YK++H      + +       
Sbjct: 1083 PEVCRAAAETIDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQ 1142

Query: 899  THIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             +  Q  IY       +  +     ++    +++  
Sbjct: 1143 HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|168180089|ref|ZP_02614753.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum
           NCTC 2916]
 gi|182669169|gb|EDT81145.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum
           NCTC 2916]
          Length = 670

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 100/555 (18%), Positives = 199/555 (35%), Gaps = 121/555 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YEE K K  +LDF+DL IN   LLK+ +    I    ++   +IL+DE QD   +Q  ++
Sbjct: 165 YEEYKDKKELLDFDDLQINMFKLLKEDE---RILKGYNKLFKYILVDEFQDCDTLQINIL 221

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L+E             +LFAVGDE Q IYSF G++P+ ++      +K          
Sbjct: 222 QMLSE-----------GNSLFAVGDEDQCIYSFRGSKPECMVDFNHYFKK--------GE 262

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I L  ++RS  +I+ +   +    +       ++                         
Sbjct: 263 KIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYNDYDKN------------------ 304

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                         S+ +   Q       A  I+  I+++I                KD+
Sbjct: 305 ----------IVLKSFLNEREQ-------AEEISKIINDIIKKG----------YGYKDV 337

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R   ++  +T     L    +I     D  +   +H   +D++A  +  +   D  
Sbjct: 338 AILYRTNMESRSLTD----LFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQICIDSYDKK 393

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ ++ ++   ++   + ++ +++  +    + ++ ++ + + I+  
Sbjct: 394 SFLKIINKPFRYISKLNVERVRRYKYAKNS-FDILKEQKDIQPFQIKN-LENLEKDINKM 451

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
              S  D    I+      +              E++ ++DE             +S+  
Sbjct: 452 NKMSAQDAIGHIIHNLGYEEYIKEYSERIKIDKEELLQIVDELKEAAEEY-----TSILT 506

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +  +E+    I +    N + V + T+H  KG+E   V +V+       +         
Sbjct: 507 FLVHVEEVEKEINK-KEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYS-------- 557

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      K  ++   EE  RL YVG+TRA + L +     
Sbjct: 558 ---------------------------KADEEVNIEEERRLFYVGITRAKENLYLTVPKV 590

Query: 670 TSNEKKSNQRTWYDM 684
              + K N     + 
Sbjct: 591 IRGKNKENSNFIKEC 605


>gi|45657598|ref|YP_001684.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600837|gb|AAS70321.1| atp-dependent DNA helicase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 672

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 95/548 (17%), Positives = 183/548 (33%), Gaps = 117/548 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+  KK+  +LD++DL+  T +LL        +R  + ++   I++DE QDT+ I
Sbjct: 182 QIFEDYKSYKKEQSLLDYDDLLYFTRELLTNHPG---VRNALSEKYRFIMVDEFQDTNKI 238

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  +   L  +             L  VGD+ Q IY+F GA  + +L   +I        
Sbjct: 239 QAHIACLLASE----------HSNLMVVGDDAQCIYTFRGASVRGILDFPKIFPN----- 283

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL + ++V                                  
Sbjct: 284 ---TKTIFLEKNYRSTPSILNLANEVLKNFSEKYDKYLF--------------------- 319

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      N        + D L +       A  I+  +                 I
Sbjct: 320 -------TDNENGPLPQVLQFEDELEE-------AEGISKILLQKREEG----------I 355

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             + + VL R   ++  +  +         I  V        +   IKDL++L + +++ 
Sbjct: 356 PFQKMCVLFRAGWNSNQLELVL----AKRNIPFVKFGGKKFIETAHIKDLLSLLKLLVNP 411

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D +S++  LK  +          I  +  ++   +E + +     I K+   + ++   
Sbjct: 412 LDSVSWIRTLK-LIPGIGNAKANSILDKIRKSSGSFEVLSEENGTTIDKYISPLYHL--- 467

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            +     +  +   ++       +  +           + LD  L F+L+   +    L 
Sbjct: 468 -YQKYKETHSEVKKMVSEFIDYYRVLLEKNYDDSKRRSEDLDAVLGFSLKY-NSLSDFLS 525

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +L  +         +    + + + + TVH+AKGLE  +VF+++T   +F          
Sbjct: 526 DLTMDPTSLSLDKMKPDDTDSDLLNLSTVHSAKGLEFDLVFVLNTTEGIFPSS------- 578

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                          K +  EE  RL YV +TRA  +L + + S
Sbjct: 579 -------------------------------KNTNIEEERRLFYVAITRARKELYLTRPS 607

Query: 669 NTSNEKKS 676
              +    
Sbjct: 608 LAQSRSGP 615


>gi|24214893|ref|NP_712374.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|24195918|gb|AAN49392.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
          Length = 672

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 95/548 (17%), Positives = 183/548 (33%), Gaps = 117/548 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+  KK+  +LD++DL+  T +LL        +R  + ++   I++DE QDT+ I
Sbjct: 182 QIFEDYKSYKKEQSLLDYDDLLYFTRELLTNHPG---VRNALSEKYRFIMVDEFQDTNKI 238

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  +   L  +             L  VGD+ Q IY+F GA  + +L   +I        
Sbjct: 239 QAHIACLLASE----------HSNLMVVGDDAQCIYTFRGASVRGILDFPKIFPN----- 283

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L  ++RST  IL + ++V                                  
Sbjct: 284 ---TKTIFLEKNYRSTPSILNLANEVLKNFSEKYDKYLF--------------------- 319

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                      N        + D L +       A  I+  +                 I
Sbjct: 320 -------TDNENGPLPQVLQFEDELEE-------AEGISKILLQKREEG----------I 355

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             + + VL R   ++  +  +         I  V        +   IKDL++L + +++ 
Sbjct: 356 PFQKMCVLFRAGWNSNQLELVL----AKRNIPFVKFGGKKFIETAHIKDLLSLLKLLVNP 411

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D +S++  LK  +          I  +  ++   +E + +     I K+   + ++   
Sbjct: 412 LDSVSWIRTLK-LIPGIGNAKANSILDKIRKSSGSFEVLSEENGTTIDKYISPLYHL--- 467

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            +     +  +   ++       +  +           + LD  L F+L+   +    L 
Sbjct: 468 -YQKYKETHSEVKKMVSEFIDYYRVLLEKNYDDSKRRSEDLDAVLGFSLKY-NSLSDFLS 525

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +L  +         +    + + + + TVH+AKGLE  +VF+++T   +F          
Sbjct: 526 DLTMDPTSLSLDKMKPDDTDSDLLNLSTVHSAKGLEFDLVFVLNTTEGIFPSS------- 578

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                          K +  EE  RL YV +TRA  +L + + S
Sbjct: 579 -------------------------------KNTNIEEERRLFYVAITRARKELYLTRPS 607

Query: 669 NTSNEKKS 676
              +    
Sbjct: 608 LAQSRSGP 615


>gi|284031863|ref|YP_003381794.1| exodeoxyribonuclease V subunit beta [Kribbella flavida DSM 17836]
 gi|283811156|gb|ADB32995.1| exodeoxyribonuclease V, beta subunit [Kribbella flavida DSM 17836]
          Length = 1098

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 128/1006 (12%), Positives = 261/1006 (25%), Gaps = 161/1006 (16%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             +    +L          +  + + ++ T +       ++L  A  T         L+  
Sbjct: 92   VDGSAAELAVRHGRLRDALATFDAATIATTHQFCQLVLRSLGVAGDTDAGVTLVEDLTDL 151

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LA 130
                      N+               L+ +         R    K  +++   +    A
Sbjct: 152  VAEVVDDLYLNLFAGSAEPPPITRATALELALKVVGNPHTRLVPEKYAEASPEGVRVEFA 211

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            K + A  E  K++  VL ++DL+      L+     A  R ++ +  + +++DE QDT  
Sbjct: 212  KAVLAEVERRKRRLGVLGYDDLLTRLAVALEDPTAPA--RRRMQRRWSVVMVDEFQDTDP 269

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +QW+VI +            +   TL  +GD KQ+IY+F G +    L            
Sbjct: 270  VQWKVIDA----------AFNGHSTLVLIGDPKQAIYAFRGGDIATYLT----------A 309

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            A        L  ++RS   ++  +  V                   H+ SR+        
Sbjct: 310  AATAGQRRTLGTNWRSDQPLVDCLQVVLGGARLGHEDIVVHPVDAHHQGSRLAGAPCDAP 369

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            +   V+  D          ++   ++P +     + R +A  I  ++     ++    R 
Sbjct: 370  FRLRVALRDQ-------FGSAARKNIPMDELRDHITRDLAADIGQLLAAGATYAG---RP 419

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++A DI V+V   KD        R       I  V +    +    A +D + L      
Sbjct: 420  LRAGDIAVIVEAHKDARAC----REALAQAGIPAVYSGDLDIFSSQAAQDWLCLLEAFEQ 475

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                        +  F  +   +                       G      + + +  
Sbjct: 476  PHRSGLVRAAATTMFFGETAASLHA--------------------GGEELTDRIGQTLRA 515

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                 +       F          +    R G   +  L                 L  L
Sbjct: 516  WADHLRAKGVAAVFEAAQLKGMADRVLAWRGGERDLTDLAHLAELLHETAHREGFGLPAL 575

Query: 551  ISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            +  L Q            R   ++   V+IMTV  +KGL+ PVV+L       F+     
Sbjct: 576  LDWLRQECTGKGRTTERTRRLDSDVAAVQIMTVWVSKGLQYPVVYLPFG----FNRHIYD 631

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            +  ++    D         + ++         K  +     +  RL YV +TRA  Q++ 
Sbjct: 632  EDELLLFHEDGVRSLDIGGRKRAE---YRANEKRWRAEVAGDDIRLTYVALTRAQSQVVA 688

Query: 665  CKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                +              +K       D +     ++E +  ++               
Sbjct: 689  WWAPSWDEVNGGISRLLRGRKQGDPVVPDQLDRPSSDEEVLVWLRRWQQAGGPVVEQSAI 748

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL- 773
            + H                   +       +     + +    +        ++ L    
Sbjct: 749  AEHVEPVAEQLPGGLRVATFSREVDLTWRRTSYSGLVRDAEQQSAGVASEHEESQLADES 808

Query: 774  -------------------LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                                        G ++H +L+                   +   
Sbjct: 809  VDPVPMPAAAAPDALPSPMEGFPVGATFGSLVHAVLEEADPHAADLHAELAGRIREQLPF 868

Query: 815  LWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKK------ 860
                     L  ++  +   P+        +      D   E+     +    +      
Sbjct: 869  WRVDATPDALATAMLPMHATPLGPLVPGLTLRDLGRGDRLRELDFEIPLAGGDRAAPREV 928

Query: 861  ------------------------------------DIIISGRIDQISISQQ----NIFI 880
                                                   ++G ID +            +
Sbjct: 929  RLAELAPLLRAHLPADDPLLAYADRLEQPLLGGQSLRGYLTGSIDVVLRVPDGGSHRFVV 988

Query: 881  FEYKTHHH-VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
             +YKT+    P +          QL          + +  L  LL 
Sbjct: 989  VDYKTNRLGDPDQPATSAQYGRDQLGA-----AMLHSDYPLQALLY 1029


>gi|301052870|ref|YP_003791081.1| ATP-dependent DNA helicase [Bacillus anthracis CI]
 gi|300375039|gb|ADK03943.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 688

 Score =  224 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 207/659 (31%), Gaps = 120/659 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNYAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 165 ILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L       
Sbjct: 224 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------ 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 275 ----SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 322

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 323 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 365

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 366 ------------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVS 398

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R ++      S   +L +   
Sbjct: 399 R---SLLDQLTIYKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYI 455

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 456 GRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKK 514

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 515 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQ 574

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 575 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 625

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|229177744|ref|ZP_04305118.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 172560W]
 gi|228605708|gb|EEK63155.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 172560W]
          Length = 688

 Score =  224 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVESGER---------NFKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELLESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|206968634|ref|ZP_03229590.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           AH1134]
 gi|218232735|ref|YP_002366011.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus B4264]
 gi|229078522|ref|ZP_04211081.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock4-2]
 gi|229108789|ref|ZP_04238395.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
 gi|229149534|ref|ZP_04277766.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1550]
 gi|206737554|gb|EDZ54701.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           AH1134]
 gi|218160692|gb|ACK60684.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus B4264]
 gi|228633880|gb|EEK90477.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1550]
 gi|228674656|gb|EEL29894.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15]
 gi|228704747|gb|EEL57174.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock4-2]
          Length = 688

 Score =  224 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVESGER---------NFKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|257095814|ref|YP_003169455.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257048338|gb|ACV37526.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 661

 Score =  224 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 92/589 (15%), Positives = 178/589 (30%), Gaps = 117/589 (19%)

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +    +DF+DLI     L +       +R K    + ++LIDE QDT+  Q+ ++R L 
Sbjct: 173 LRAYQAVDFDDLIALPVTLFEDHPE---VRDKWQNRLRYLLIDEYQDTNAGQYRMLRLLA 229

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                            AVGD+ Q+IY + GA+ + +    R              +I+L
Sbjct: 230 G----------PRAAFTAVGDDDQAIYGWRGADIENLRGLPRDY--------LNLKVIKL 271

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST  IL   + + S  E        S                             
Sbjct: 272 EQNYRSTVRILKAANALISHNEKLFDKKLWS----------------------------D 303

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
             +    + +   D   +       A  +   +           +  +     +D  +L 
Sbjct: 304 LGHGDPITVSVCQDGEKE-------AEAVVMKLQA---------HRFEHRGAFRDYAILY 347

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R       +  L R    + +I  + +      +   IKD+ A  R + + +DD +F+  
Sbjct: 348 RGNFQARALEQLLR----NQRIPYLLSGGQSFFEKTEIKDITAYLRLLANSDDDPAFIRA 403

Query: 441 LKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIH 493
           + +P        +  +          ++    +           ++      ++I+ L  
Sbjct: 404 VSTPRRGVGASTLQALGSYAGERQLPLFAAAFEQGFAPRVQARQLAPLLEFCEFINRLQA 463

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLDEFLNFTLRNEQNSYSSLQE 549
            A           +L A       +              + +F ++  +       +L +
Sbjct: 464 RAAREPAAQVMPDLLRAIAYEDWLLEHDEARAARIKLTNVQDFCDWLGKKGDEEQKTLID 523

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L   +       K+      + V++ T+H AKGLE   VFL+     V  H         
Sbjct: 524 LTQTIALINMLDKQDADI--DAVQLSTLHAAKGLEFKHVFLIGIEEGVLPH--------- 572

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      +    +  EE  RL+YVG+TRA   L +     
Sbjct: 573 --------------------------REAEADNRIEEERRLMYVGITRAQRSLHLSYAEK 606

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
               ++         + +    D R    K  +  +K        +   
Sbjct: 607 RKQGRELIPCRASRFIDEMGREDLRFSGGKNDSVPDKAAGADRLAALKA 655


>gi|322805730|emb|CBZ03295.1| ATP-dependent DNA helicase UvrD/PcrA [Clostridium botulinum H04402
           065]
          Length = 670

 Score =  224 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 100/555 (18%), Positives = 199/555 (35%), Gaps = 121/555 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YEE K K  +LDF+DL IN   LLK+ +    I    ++   +IL+DE QD   +Q  ++
Sbjct: 165 YEEYKDKKELLDFDDLQINIFKLLKEDE---RILKGYNKLFKYILVDEFQDCDTLQINIL 221

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L+E             +LFAVGDE Q IYSF G++P+ ++      +K          
Sbjct: 222 QMLSE-----------GNSLFAVGDEDQCIYSFRGSKPECMVDFNHYFKK--------GE 262

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I L  ++RS  +I+ +   +    +       ++                         
Sbjct: 263 KIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYNDYDKN------------------ 304

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                         S+ +   Q       A  I+  I+++I                KD+
Sbjct: 305 ----------IVLKSFLNEREQ-------AEEISKIINDIIKKG----------YGYKDV 337

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R   ++  +T     L    +I     D  +   +H   +D++A  +  +   D  
Sbjct: 338 AILYRTNMESRSLTD----LFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKK 393

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ ++ ++   ++   + ++ +++  +    + ++ ++ + + I+  
Sbjct: 394 SFLKIINKPFRYISKLNVERVRRYKYAKNS-FDILKEQKDIQPFQIKN-LENLEKDINKM 451

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
              S  D    I+      +              E++ ++DE             +S+  
Sbjct: 452 NKMSAQDAIGHIIHNLGYEEYIKEYSERIKIDKEELLQIVDELKEAAEEY-----TSILS 506

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +  +E+    I +    N + V + T+H  KG+E   V +V+       +         
Sbjct: 507 FLVHVEEVEKEINK-KEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYS-------- 557

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      K  ++   EE  RL YVG+TRA + L +     
Sbjct: 558 ---------------------------KADEEVNIEEERRLFYVGITRAKENLYLTVPKV 590

Query: 670 TSNEKKSNQRTWYDM 684
              + K N     + 
Sbjct: 591 IRGKNKENSNFIKEC 605


>gi|148379390|ref|YP_001253931.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|153932608|ref|YP_001383766.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. ATCC 19397]
 gi|153937834|ref|YP_001387316.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A
           str. Hall]
 gi|148288874|emb|CAL82958.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152928652|gb|ABS34152.1| helicase, UvrD/REP family [Clostridium botulinum A str. ATCC 19397]
 gi|152933748|gb|ABS39247.1| helicase, UvrD/REP family [Clostridium botulinum A str. Hall]
          Length = 670

 Score =  224 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 100/555 (18%), Positives = 199/555 (35%), Gaps = 121/555 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YEE K K  +LDF+DL IN   LLK+ +    I    ++   +IL+DE QD   +Q  ++
Sbjct: 165 YEEYKDKKELLDFDDLQINIFKLLKEDE---RILKGYNKLFKYILVDEFQDCDTLQINIL 221

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L+E             +LFAVGDE Q IYSF G++P+ ++      +K          
Sbjct: 222 QMLSE-----------GNSLFAVGDEDQCIYSFRGSKPECMVDFNHYFKK--------GE 262

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I L  ++RS  +I+ +   +    +       ++                         
Sbjct: 263 KIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYNDYDKN------------------ 304

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                         S+ +   Q       A  I+  I+++I                KD+
Sbjct: 305 ----------IVLKSFLNEREQ-------AEEISKIINDIIKKG----------YGYKDV 337

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R   ++  +T     L    +I     D  +   +H   +D++A  +  +   D  
Sbjct: 338 AILYRTNMESRSLTD----LFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKK 393

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ ++ ++   ++   + ++ +++  +    + ++ ++ + + I+  
Sbjct: 394 SFLKIINKPFRYISKLNVERVRRYKYAKNS-FDILKEQKDIQPFQIKN-LENLEKDINKM 451

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
              S  D    I+      +              E++ ++DE             +S+  
Sbjct: 452 NKMSAQDAIGHIIHNLGYEEYIKEYSERIKIDKEELLQIVDELKEAAEEY-----TSILS 506

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +  +E+    I +    N + V + T+H  KG+E   V +V+       +         
Sbjct: 507 FLVHVEEVEKEINK-KEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYS-------- 557

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      K  ++   EE  RL YVG+TRA + L +     
Sbjct: 558 ---------------------------KADEEVNIEEERRLFYVGITRAKENLYLTVPKV 590

Query: 670 TSNEKKSNQRTWYDM 684
              + K N     + 
Sbjct: 591 IRGKNKENSNFIKEC 605


>gi|218902425|ref|YP_002450259.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH820]
 gi|228926366|ref|ZP_04089438.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228944936|ref|ZP_04107297.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|218536634|gb|ACK89032.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH820]
 gi|228814605|gb|EEM60865.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228833190|gb|EEM78755.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 688

 Score =  224 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 207/659 (31%), Gaps = 120/659 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 165 ILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L       
Sbjct: 224 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------ 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 275 ----SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 322

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 323 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 365

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 366 ------------------EANQILQLIQGKVDSGER---------NYKDFCLLYRTHSVS 398

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R ++      S   +L +   
Sbjct: 399 R---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYI 455

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 456 GRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKK 514

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 515 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQ 574

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 575 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 625

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|163753956|ref|ZP_02161079.1| UvrD/REP helicase [Kordia algicida OT-1]
 gi|161326170|gb|EDP97496.1| UvrD/REP helicase [Kordia algicida OT-1]
          Length = 969

 Score =  224 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 128/876 (14%), Positives = 248/876 (28%), Gaps = 162/876 (18%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           K+  L   + K  +E +   +  +           +++       Y E   +   LDF  
Sbjct: 149 KADKLINYINKVGEENLDFEELISAEDAN------ISVIGEFYKLYIEKLNEENALDFSS 202

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +   T  LLK       +  +I  +I + +IDE QDT+ IQ ++I  +           S
Sbjct: 203 IQSETYSLLKDN---QNVLDEIQSKIKYFMIDEYQDTNTIQEKIILLIA----------S 249

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               +  VGD+ Q +Y F GA  + +L      QK           I++  ++RS  +I+
Sbjct: 250 KNNNICVVGDDDQGLYRFRGATIRNILEFPDNFQK------GACKEIKITTNYRSHPEII 303

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              +      +  +                    G    +++ +   +            
Sbjct: 304 DFYNNWMDELDWTKE-------------------GKTFRFDKTIIPREDNFIKAP----- 339

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
               +  E+S       +   I  +     +             I  L +  K   +   
Sbjct: 340 TVIKVSSEASLHHYFEEVYQFIIELENKGVLKD--------RNQIAFLFKSVKGERV--N 389

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSF--------VCMLK 442
                  +  I V      +  +   I+ L+    FI     D L++             
Sbjct: 390 ALAEYLEERGIKVFSPRSALFFEREEIRLLIGAIVFIFPDLFDVLAWSDTAKLDIWKYYD 449

Query: 443 SPLFNFSEDDIFKICTQRHETETVYE---YIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           S    F       +   +   +   +                  ++  + E    +   +
Sbjct: 450 SCKRQFGNAIRQDLEKHKALLQWCQDKAKRHLTLTESTNYSLAALVYQLLEFSMFSDCLN 509

Query: 500 PH--------------DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
                             FT +L   +               VL    N   R   +   
Sbjct: 510 VDLKANKTDLRASYNIALFTKLLWKFEYLYNVTVITPENKEKVLQNLFNRFFRFLNDG-- 567

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L+E                 A    V  MT+H +KGLE P+VF+    ++    K    
Sbjct: 568 GLEEFEDF----------DEYAPSGCVSFMTIHQSKGLEFPIVFVGMPTNRQGPRKQYDD 617

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           +  +         P                 + L++    ++ RL Y   +R  + L++ 
Sbjct: 618 VDELLQEEYYHKPPF----------------EPLEEVKYYDFWRLYYTAFSRPQNVLVLG 661

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
            +   + +   N          +     R + +         +   Y+ +   P N   E
Sbjct: 662 NYETRNAKGIVNSPHKLLQDSYAKAPHWRNENV---------DITKYDLAEIKPTNIKHE 712

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
                              S I    N P       +  K    LE           G +
Sbjct: 713 YS---------------FTSHILLYENCP-------LQYKFYKELEFTEVRTGGVLGGQL 750

Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---- 841
           +H   Q I  + +   K+ + +   +N + W    Y  L       L  P     +    
Sbjct: 751 LH---QTIEDIHKAVLKDEVHTLTNENIEAWFNTNYHLLTKQQKSYLHLPQRKALLKQIL 807

Query: 842 ------SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
                 S D    V     ++  K+D I+ G ID I      + + ++K+          
Sbjct: 808 NYRDKNSNDWDKIVEAEVDVSLVKEDYILKGTIDLIRGENNTVELIDFKSGSKPDVNATD 867

Query: 896 -----IPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                +   +  QL +Y  ++++   +K     L Y
Sbjct: 868 ELTRGLLDRYRRQLEVYAHLVEERTGHKVSKMHLHY 903


>gi|261315587|ref|ZP_05954784.1| UvrD/REP helicase [Brucella pinnipedialis M163/99/10]
 gi|261304613|gb|EEY08110.1| UvrD/REP helicase [Brucella pinnipedialis M163/99/10]
          Length = 580

 Score =  224 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 75/463 (16%), Positives = 141/463 (30%), Gaps = 102/463 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 181 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 237

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 238 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 297

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 298 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 349

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 350 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 380

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 381 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 422

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 423 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 482

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 483 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 542

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
             + +    E    ++ L E +      E     SL+  +  +
Sbjct: 543 AMWQNDKSAEAPGRLENLKELIRSMEEYE-----SLRGFLEHV 580


>gi|229028999|ref|ZP_04185098.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1271]
 gi|228732279|gb|EEL83162.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1271]
          Length = 688

 Score =  224 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 107/658 (16%), Positives = 208/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   ++            S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNRAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NFKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        N V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPEKNAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|228951708|ref|ZP_04113810.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807993|gb|EEM54510.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 688

 Score =  224 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVESGER---------NFKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQNNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|313117253|ref|YP_004044236.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Halogeometricum borinquense DSM
           11551]
 gi|312294144|gb|ADQ68575.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Halogeometricum borinquense DSM
           11551]
          Length = 947

 Score =  224 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 150/959 (15%), Positives = 277/959 (28%), Gaps = 175/959 (18%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT--QCIEERFSLLSSF 72
             Y D +      V  +     L+ +   PT     +  ++      +   E F  L+  
Sbjct: 141 AAYDDFFRAIEDPVELLGLLTQLASKGVFPTADGWYRNGERHLDGDFEAFSELFDELNQP 200

Query: 73  FLTQKFTPQ-KNIITQEINKKS--PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-SLT 128
                   + ++ +++    K   PD  +K         K        + F+   A    
Sbjct: 201 RNGGSKQSRLRSKLSRYGRNKCYLPDAPDKSTIRGGRGEKQVPADVARRAFEEDRADLKQ 260

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               +   Y E       L+F  L +    LL           + D    +++IDE QD+
Sbjct: 261 FVHDVYFEYLEFALSRNYLNFGFLQLFAFVLLCDDHSL-----RDDVAFEYVMIDEFQDS 315

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           S IQ+++   L +              L  VGD KQSIYSF  A  + +   +    +  
Sbjct: 316 SEIQFKLALLLAD-----------TNNLCVVGDWKQSIYSFQYAAVENITEFESRLDRFV 364

Query: 249 TNAGQKFSI----------IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
               +              IEL  ++RST  IL   +     P  +    +      R  
Sbjct: 365 AELNEDGERVSWATRPITDIELVENYRSTQAILDFSEHSLVTPAASTDKVDVEEVQDRIV 424

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           S                                  +S  +          I   I  + G
Sbjct: 425 SLSANTP--------------------------CENSNIEAIQHEDEHEAILTKIQEIAG 458

Query: 359 TD--TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
            +   +  +G+ R  +  D+ VL R R               +Y + +       L    
Sbjct: 459 NEDYQVEEDGELRPPEYGDVAVLTRTRD----FGRELLSAAAEYGLPMSYEGGIELFRSD 514

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
             K L+A  R +    D      ++      ++ D+I  I       + +  +  +    
Sbjct: 515 PAKLLLAWLRILD--ADSERGWAVVLEEA-GYTLDEIEYILDTERYPDNMQAFKTE---- 567

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                            +A+  +       +                   DVL   +   
Sbjct: 568 -----------------LAELETIGGVAQRVFSRYNY--------DGAHADVLLTTVQSI 602

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                 +   L + I    +   T +   SA  N V + T+H AKGLE P+V LV+  S 
Sbjct: 603 HSATTVTRGDLIQFIERGIENGSTQEVHASAGVNSVTVQTIHAAKGLEHPIVILVNMNSH 662

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK----STQEEYNRLLY 652
            F         I                     +I  +    + +       +E  RLLY
Sbjct: 663 RFPPSGGNSNTITFDDPIGLRQRKRYADDYGYPHIHDNWRTDVLRTCLPRGYDEERRLLY 722

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V MTRA   L+     N +                        +++ +       E  A 
Sbjct: 723 VSMTRAESHLVFSAGENPNT---------------------FFEELPVAVEEITPEVEAD 761

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
           + S     N  +                    +P     + P+ L         + ++  
Sbjct: 762 DRSETTQANLQISVP-----------------TPAGPVGHSPHTLM--------RDDVFE 796

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
            ++  +    G  +H+  +             + +    +         K L+ S     
Sbjct: 797 DVAGGRGTEFGTQVHEFAERY----------ALGADVEPSKGNDDESHLKTLIDS----- 841

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
                   +  +   E  V   +    + + ISG +D + I    + I ++KT      E
Sbjct: 842 --------LDGEIRVEEDVYLPLTVDGERVTISGVVDLVHILPDTVEIIDFKTDRGRHAE 893

Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            E     +  QLS+Y  +L + +P + +   + Y +E     I         AE++  +
Sbjct: 894 AE-----YRKQLSVYYHVLHECFPERDVTAAIFYTAEATRVDINP-LSKADIAELTRAV 946


>gi|302918178|ref|XP_003052603.1| hypothetical protein NECHADRAFT_36498 [Nectria haematococca mpVI
           77-13-4]
 gi|256733543|gb|EEU46890.1| hypothetical protein NECHADRAFT_36498 [Nectria haematococca mpVI
           77-13-4]
          Length = 1057

 Score =  224 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 97/652 (14%), Positives = 183/652 (28%), Gaps = 158/652 (24%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+   K++ +LD++DL++   +LL+               +  +LIDE QDT+ IQ+
Sbjct: 177 YEEYQIQLKRSNLLDYDDLLVKCVELLRDHPACV-------SNVQAVLIDEYQDTNGIQY 229

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+++   +          +   +  VGD  QSIY +  AE + + R  R           
Sbjct: 230 ELMKLFAQ----------ANHRITIVGDPDQSIYGWRSAEIRNLYRLLRDYP-------- 271

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + L  ++RS+  IL V   V    +           T   R               
Sbjct: 272 DTDEVSLEENYRSSQSILDVSLNVIQQDKKRYQKVLLPVHTKGARPV------------- 318

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 L    S++     I   +   +            +++ 
Sbjct: 319 ----------------------LRTLKSSAAEGEWIVSELKRAV-------MMFGGMLKY 349

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           +D+ +L+R    +               I+          +   IK L+   R +   E+
Sbjct: 350 EDVAILLRSAALSRHTESAL----GKAGIAYRMIGGHKFYERKEIKVLLDYLRVVSQPEN 405

Query: 434 DLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           + +   ++  P     E  I   +        +++  I K          ++ + + + +
Sbjct: 406 NDALARIINVPRRGIGEATIKSLLEEAEKANMSLWTLILKHCRGTRKATTNIRQKMEQKL 465

Query: 493 H------------------IAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDE 531
           +                   +   +  D    ++         ++  +    +    + E
Sbjct: 466 NTELIRVISTVKKQADGITQSSPATLVDLIEQLITQLNFKKYLEEEYAEDHEQRWANVQE 525

Query: 532 FLNFTLRNEQNSY-------------------SSLQELISELEQYPPTIKRAHSANHNE- 571
           F+N      ++                       L   ++ +       K   S +    
Sbjct: 526 FVNLVSDFMRDFGSIDEDALPEIENLDQVKVDDMLGRFLANVSLASDAQKNDGSKDQKSV 585

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V I T+H AKGLE PVVF+    +    H                               
Sbjct: 586 VTISTIHAAKGLEWPVVFVPSVYTGSIPH------------------------------- 614

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                   +    +E  RLLYV MTRA   L +      S    S        V  S   
Sbjct: 615 -------ARSEDTDEERRLLYVAMTRAQALLYLSCPLYGSQGMSSK-------VELSPFV 660

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                K       + D  +    +      TP E+    K            
Sbjct: 661 SPFASKAFAKQGPSFDRRVIESAAKILGRETPAEKAIFAKLPPMFSPEDDAF 712


>gi|291538486|emb|CBL11597.1| Superfamily I DNA and RNA helicases [Roseburia intestinalis XB6B4]
          Length = 613

 Score =  224 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 106/553 (19%), Positives = 187/553 (33%), Gaps = 122/553 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           T+ + +   Y E   KN ++DF+D+++ T +L ++    A I      +  +ILIDE QD
Sbjct: 157 TVFRKVYRQYHEFLYKNRLIDFDDMLVYTKELFEQ---RADILAAWQNKYRYILIDEFQD 213

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + IQ+++I+ L              + LF VGD+ QSIY F GA+P+ +L  K      
Sbjct: 214 INRIQYDIIKMLAG----------KRKNLFIVGDDDQSIYRFRGAKPEIMLHFKDDYP-- 261

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +   + L +++RS  +I+T    +    +                         
Sbjct: 262 ------EAETVLLDVNYRSVKNIVTSAGYLIGHNKERFQK-------------------- 295

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       +        W  +     + +       RI + I   +          
Sbjct: 296 --------KIEAADQGDIPVEWQLFESQRKENA-------RIIWDIQEAVEKG------- 333

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
               + ++  VL R          L      +Y I     D    L +H   KD+ A  R
Sbjct: 334 ---AKYEEFAVLFRTNTQPR----LLMEQLMEYNIPFRTRDTVPNLYEHWIAKDIFAYIR 386

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +   +   F+ ++  P    S + + +        E  YE                I+
Sbjct: 387 IAMGSRERRDFLQIMNRPKRYISRESLDEETVAFDVWEWYYE--------EQPWVAKRIE 438

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKG------RQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +   I + +  SP+     I  A            +     +++ DVLDE L+      
Sbjct: 439 KLEGDIRMLERLSPYAAINYIRKAIGYDEFCTEYADYRRIKADDLFDVLDELLDAAREY- 497

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             +Y +  + I    +      R  + N N V + T+H+AKGLE   V+++D    V   
Sbjct: 498 -KTYDAWFDHIENYTKELQEFYRVQNQNPNSVALATLHSAKGLEYENVYIIDVNEGVMP- 555

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                               K + +   EE  R+ YVGMTRA  
Sbjct: 556 ----------------------------------YKKAVLEPEVEEERRMFYVGMTRAKK 581

Query: 661 QLIICKHSNTSNE 673
            L +      +++
Sbjct: 582 NLHLFSVRQLNHK 594


>gi|297172256|gb|ADI23234.1| superfamily I DNA and RNA helicases [uncultured nuHF2 cluster
           bacterium HF0770_13K08]
          Length = 581

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 103/631 (16%), Positives = 197/631 (31%), Gaps = 128/631 (20%)

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK--------EKLKKSQDEFIK 109
                 +   L+ +        P K      + +    L           L +   E   
Sbjct: 20  SILDSSDSRDLIKASLAETVGKPSKYFPKAAVLQNMFSLAFNRFCTQKMILDQPYHERSF 79

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             ++  +         + T+   + A Y   KK+  V+DF+DL+ N  +LL +       
Sbjct: 80  HLEQLISADFPNFEENTETILN-ILATYRHKKKRGQVMDFDDLLENWLELLLRHGEGLP- 137

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              + ++I +IL+DE QDT+ +Q  ++  L+             + L  VGD+ QSIYS+
Sbjct: 138 ---LCRQIQYILVDEYQDTNQVQANILYRLSR----------PHKNLMVVGDDAQSIYSW 184

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+   +L      Q              +  ++RS+ +IL   ++  +        + 
Sbjct: 185 RGADFGNMLEFPEHYQ---------AVTYNMEENYRSSPEILDAANRSINYNTRQFEKNL 235

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S                        S  + +       W           ++   A  +
Sbjct: 236 FS------------------------SLAEGEKPLVHYVW-----------ASQDEAELV 260

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I      +          I   ++ VL R    +       + +     I  V +  
Sbjct: 261 LENILCFRDKE----------ISLNEMSVLYRNHVQSA----ALQVVLTHAGIPFVVHSG 306

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYE 468
               +   IKD+ A  + + +  D+++++ +L+  P    +      +  Q  +   + +
Sbjct: 307 VKFFEQAHIKDVTAFLKVLFNPLDEIAWMRLLRLLPGIGNTTAHRIFMVFQSQQAVRLTK 366

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPH-DFFTLILGAKKGRQQFIS--RFGNEV 525
              +       K       + E+       S        +L     R+   S      + 
Sbjct: 367 NNIELQKLIPKKALESWNALLEIFQQMLEESVTPSHMIGLLYKSYYREVLFSSFENAPQR 426

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAK 581
              +     F     +     L+  ++EL     +I   H A      + + + T+H AK
Sbjct: 427 ETDIRYLEEFAGNYNK-----LEAFLNELSLVGSSIITDHEAEQQDNQDTLTLTTIHQAK 481

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE  VVF++     +F H+                                       +
Sbjct: 482 GLEWKVVFIIGLTEGLFPHQRSLGT----------------------------------E 507

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
              EE  RL YV MTRA   L+I     +S 
Sbjct: 508 EQIEEERRLFYVAMTRAKRHLLITAPVVSSG 538


>gi|240115219|ref|ZP_04729281.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID18]
 gi|260440963|ref|ZP_05794779.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI2]
 gi|268600900|ref|ZP_06135067.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID18]
 gi|291044290|ref|ZP_06569999.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae DGI2]
 gi|268585031|gb|EEZ49707.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID18]
 gi|291011184|gb|EFE03180.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae DGI2]
          Length = 1200

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 129/936 (13%), Positives = 266/936 (28%), Gaps = 160/936 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L +YLN+   E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +      + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +    +           +      +     
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKA 529

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKR 383
             ++                  A   A  I+  +   +    N K R +Q+ DI VLVR  
Sbjct: 530  NKDVL------------RRRAADYCADEIARALNEASGGRLNFKGRPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +I+   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMISAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                       + I Q       
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDIWQKYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +     K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +     +++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRTYACEKDGITMLKRNWRRVADNAPAGTDFAFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  GNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+         +++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +   ++ D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY----- 898
             EV  + +  ++    +  ++G ID +       I I +YK++H      + +       
Sbjct: 1083 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQ 1142

Query: 899  THIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             +  Q  IY       +  +     ++    +++  
Sbjct: 1143 HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|15594689|ref|NP_212478.1| DNA helicase (uvrD) [Borrelia burgdorferi B31]
 gi|2688234|gb|AAC66713.1| DNA helicase (uvrD) [Borrelia burgdorferi B31]
          Length = 699

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 93/544 (17%), Positives = 165/544 (30%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 167 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 223

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 224 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFDNVI--- 270

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +  +   R             
Sbjct: 271 -----KFYLVQNYRSNSNIVGIANEVISKNKNRYEKQITTQNSSNKRMKF---------- 315

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                      + +       I+  I                  
Sbjct: 316 --------------------LVFQSTSDEAEYFSNLLISNDIKT---------------- 339

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 340 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 390

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISKFQHV 484
           +D +SF+ M+  P     +  + KI +  ++ +  +              N         
Sbjct: 391 KDKISFLRMINKPSRGIGKTTLDKIISSLNDKDVNFNLFCASKKTLGLLKNRAKESLLLF 450

Query: 485 IKYIHELIHIAQ---FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           +    EL        + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 451 LNVYEELGKKLFEDNYINLSAFIEDVVIRFGLLDYYRKFDKDEKLRNIDELINSGIEYSG 510

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 511 ----TFEGLAIFLENSSLSPLISGDFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 563

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 564 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 591

Query: 662 LIIC 665
           LI+ 
Sbjct: 592 LIVT 595


>gi|170759918|ref|YP_001786804.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406907|gb|ACA55318.1| helicase, UvrD/REP family [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 670

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 100/555 (18%), Positives = 197/555 (35%), Gaps = 121/555 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YEE K K  +LDF+DL IN   LL + +    I    ++   +IL+DE QD   +Q  ++
Sbjct: 165 YEEYKDKKELLDFDDLQINMFKLLNEDE---RILKGYNKLFKYILVDEFQDCDTLQINIL 221

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L E  F           LFAVGDE Q IYSF G++P+ ++      +K          
Sbjct: 222 QMLCEGNF-----------LFAVGDEDQCIYSFRGSKPECMVDFNHYFKK--------GE 262

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I L  ++RS  +I+ +   +    +       ++                         
Sbjct: 263 KIYLRYNYRSPKNIVEISKNLIKNNKLRNNKRIEAYNDYDKN------------------ 304

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                         S+ +   Q       A  I+  I+++I                KD+
Sbjct: 305 ----------IVLKSFLNEREQ-------AEEISKIINDIIKKG----------YGYKDV 337

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R   ++  +T     L    +I     D  +   +H   +D++A  +  +   D  
Sbjct: 338 AILYRTNMESRSLTD----LFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKK 393

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ ++ ++   ++   + ++ +++  +    + ++ ++ + + I+  
Sbjct: 394 SFLKIINKPFRYISKLNVERVRRYKYAKNS-FDILKEQKDIQPFQIKN-LENVEKDINKM 451

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
              S  D    I+      +              E++ ++DE             +S+  
Sbjct: 452 NKMSAQDAIGHIIHNLGYEEYIKEYSERIKIDKEELLQIVDELKEAAEEY-----TSILT 506

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +  +E+    I +    N + V + T+H  KG+E   V +V+       +         
Sbjct: 507 FLVHVEEVEKEINK-KEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYS-------- 557

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      K  ++   EE  RL YVG+TRA + L +     
Sbjct: 558 ---------------------------KADEEVNIEEERRLFYVGITRAKENLYLTVPKV 590

Query: 670 TSNEKKSNQRTWYDM 684
              + K N     + 
Sbjct: 591 IRGKNKENSNFIKEC 605


>gi|229171974|ref|ZP_04299539.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus MM3]
 gi|228611317|gb|EEK68574.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus MM3]
          Length = 688

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 105/658 (15%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   ++            S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNRAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDIKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+       +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---VPLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NFKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---- 556
              I+  K    +++         +   + E +   L      +S +   +  +++    
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFSDIPAYLQFIDEAIQG 575

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        N V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPEKNAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|302335487|ref|YP_003800694.1| UvrD/REP helicase [Olsenella uli DSM 7084]
 gi|301319327|gb|ADK67814.1| UvrD/REP helicase [Olsenella uli DSM 7084]
          Length = 1176

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 141/986 (14%), Positives = 283/986 (28%), Gaps = 152/986 (15%)

Query: 21   WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ---TQCIEERFSLLSSFFLTQK 77
            W     +   + +                 +   +A++   +     R   L+   L Q 
Sbjct: 209  WLDAARRALVLGQDAGAFESKTGTGERANLERGIKAAEGFFSHAPSARTPALAEATLAQI 268

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
              P+       + +   +L+    + +              +         LA+ ++  Y
Sbjct: 269  GRPKDAYRKATMREVGAELRSAFAELRLCV-------AFAGVGPLAEQICDLARKVDRRY 321

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
               K     LD +DL+  T    +       I     ++   +++DE QDT+  Q  +I 
Sbjct: 322  ARRKAAAGALDNDDLLSLTLGAFRDHP---EIAALYGEKFRLVMVDEFQDTNAQQVRMIE 378

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
             L+               L  VGD +QSIY F  A+ +         ++R    G   ++
Sbjct: 379  LLSGR---------DACHLCTVGDAQQSIYRFRAADVQVFRD-----RERFLAEGGTGAV 424

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            + L  +FRS  D+L +V  +         +               G              
Sbjct: 425  VCLDQNFRSHDDVLRLVACLLGKGLVPGFMDLRPWAGRPTSYGAAGLP------------ 472

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                        +S    +P    +  LAR++A  I + +              +A D+ 
Sbjct: 473  --RVSVEAVVGLSSGRRGVPATLRSRQLARQMAERIGDYVAAGQ----------RADDVA 520

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L+ +  +  +     R       I  V +     +D   +  + +L   + +  D  + 
Sbjct: 521  LLLGRMSNLGVYLEALRE----RGIDCVVSGGSTFSDAPEVHVVASLLHVLANPRDTQAG 576

Query: 438  -VCMLKSPLFNFSEDDI----------FKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
               +L S +F+ + DD+               +R     ++++         ++     +
Sbjct: 577  LYPVLVSRMFSLTADDLCLLSTRQQERADALAKRGIDVGLWDFEFPRGCVPSARLVRARE 636

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-EQNSYS 545
             +   I         D     +       +   R G +    L   L       E    +
Sbjct: 637  VLGRAIGRLGSWGVADVLLSAIRESGWIVRL-ERAGADGQAQLANVLAAVRHVGELADEA 695

Query: 546  SL------QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             L       E    LE                V++MTVH +KGLE PVV + +      +
Sbjct: 696  GLGVSSAALEFDRWLEAAKVGPASLVGGGAGSVKVMTVHASKGLEYPVVAISECWGNDRA 755

Query: 600  HK-------------HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS-TQE 645
                               +    +  D        P   +     +  +  +     Q 
Sbjct: 756  ASARGITAENRGGTVRAALVPEGVTPLDLRTDVPLDPSECTTTIDWAKFLHAVSADGEQA 815

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN--- 702
            E  RLLYV +TRA + +I+      S++   +      +    F                
Sbjct: 816  ERARLLYVAITRAKEAVILGMGVTLSSKGSVSPTLARGVAEALFGEALPAPGRHEVPYGG 875

Query: 703  -----------SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                         ++      +         PL   E + +   E  I  +  S    + 
Sbjct: 876  SAPASVRVVSMRPSEQGEPVVDDGGAGAAEPPLAALEDVDRDAGELAIVDEATSDGLPEA 935

Query: 752  N------------------------------------EPYILNPSTIDTKGKTNLESL-- 773
                                                  P   + S + T+G    E+   
Sbjct: 936  RQHAGTWSAREGVFSYSSARAQMLVGEGEGQPAEGDVRPLPEDASLVGTRGDAGAEADDG 995

Query: 774  -----LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                    ++  N G   H+L Q +           I    TK       ++   L  ++
Sbjct: 996  PMADTADADKATNLGSAFHELAQCLVEGQGALAPGRIER--TKAYWRLSTRQGARLDAAL 1053

Query: 829  TRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRIDQISIS--QQNIFIFEYKT 885
             R  ++ +    +S D   +E+     ++ P     + G ID ++      +  + +YKT
Sbjct: 1054 ARWQDSKLRREVLSHDLVRAELPFFRAVDAPYGSH-VEGAIDLVATDVGSTSALVVDYKT 1112

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKIL 911
                   ++ +   H  Q + Y  +L
Sbjct: 1113 G-DAGLSLDEVAERHRMQANFYASVL 1137


>gi|310820608|ref|YP_003952966.1| ATP-dependent DNA helicase, uvrd/rep family protein [Stigmatella
            aurantiaca DW4/3-1]
 gi|309393680|gb|ADO71139.1| ATP-dependent DNA helicase, UvrD/REP family protein [Stigmatella
            aurantiaca DW4/3-1]
          Length = 1213

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 136/936 (14%), Positives = 283/936 (30%), Gaps = 94/936 (10%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP-TILKKAQTLQQASQTQC 61
               GL    +     ++         ++     + + E           +  ++A +   
Sbjct: 198  REEGLRAETAAVSNIEEARAGLEALFAESLTLCASARELDAKGEWRLLREACERALEGMT 257

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE----FIKIRDRFNTY 117
             E  F+      L   F        +     +  ++    +   +     I++ D F  +
Sbjct: 258  PENLFTADRLPALKAAFMADGRNFARLSKGAASPIRALYWRIFGKSDGSVIRLEDAFAAW 317

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +     +    L   +   +E    +  V DF  L++   DLL+        R ++ + +
Sbjct: 318  RTAPFEVTFRNLLGQVEVRHETEFTRRNVFDFTALLVKARDLLRDHPA---FRRQVQERM 374

Query: 178  NHILIDEVQDTSLIQWEVI-----------RSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +L+DE QDT+ +Q E++           R+L  D  +       P  L AVGD KQSI
Sbjct: 375  GALLVDEFQDTNRLQLELVLLLSEQREGGPRALRPDEDLRATLPLEPAFLCAVGDRKQSI 434

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F GA+                  G       L  + RS   +L   ++ F+       
Sbjct: 435  YEFRGADVSVFALLAEKMVAEGGAKG------FLQDNRRSVPALLDFFNRAFAGV----- 483

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                    +     R  +V  V   + +     +             ++     +    A
Sbjct: 484  -------LVASDPPRPYEVEYVPKEDDLSPVRPALSEEPAVERLLIGEAETAAEARERDA 536

Query: 347  RRIAYTISNMIGTDTIF-----SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
              +A+ +  M+              + R  +  D+ +L+R          + R     + 
Sbjct: 537  NAVAHRLRLMLAPGAAPCVAHEDGQRLRPARGGDVAILLRTFTHL----EVYRQALIRHG 592

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            +               + DL +L   +   +D L+   +L+SPL   S+  +F++ +   
Sbjct: 593  VPHRVLRGRGFYGAQEVLDLASLLALLADPDDSLALAAVLRSPLVGLSDASLFRLSSGDQ 652

Query: 462  ETETV-----YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                           + A     + +  +  +  L              + +     R+ 
Sbjct: 653  GLSLAGVLQKDLAACELAPNERLRLERFLTALPSLRRERDRLGVKALLQVAMNITGYREA 712

Query: 517  FIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA------NH 569
                 +  +    +D+ L    R ++           EL     +      A      + 
Sbjct: 713  MAGTPYAEQASANIDKLLALAGRRDERGTGGCVAFARELRMLVESEPTEAQADLLDAGDP 772

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              V+++T+H AKGLE PVV +   G +  S         +  L   P +P  +      +
Sbjct: 773  RAVQLLTIHRAKGLEWPVVVVPGLGGKRRSESARVHFERIHGLVLRPWLPDTLES--FSS 830

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS----------------NTSNE 673
                 +   L      EY RLLYV +TRA D L++   +                 T   
Sbjct: 831  GRFEAVKDELDARGLAEYRRLLYVALTRARDVLLLSGTAEKRVPLSWWTMIDGRLGTDAA 890

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
             ++  R           +        L  +  + E              P+    + + L
Sbjct: 891  LRARVRDVEAAALPPPADPLPPDAKALVEAEARVEAALQRVRGSTAVREPVSAVASAEAL 950

Query: 734  MDEQKIPKKLFSPIKNDIN--EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
             D    P++     +  +    P+ L   +     +              R      LL+
Sbjct: 951  QDFIICPRRYRYIHQLGLTGHRPWELPAKSRPIWVEAGAWVETQGAPQMAR-----LLLR 1005

Query: 792  VIFT----LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD--- 844
             +      +P  +R+  +T+       L   +  +  L    R L  P     ++     
Sbjct: 1006 ELDFRWASVPVPERRAHLTALLQDLGHLPEEEGMEAALKMAERFLGTP-FARILAASPSS 1064

Query: 845  -SYSEVSVSGKINCPK--KDIIISGRIDQISISQQN 877
              +  +    +++ P     + + G +D +  + + 
Sbjct: 1065 ALHRALPFGLELSSPGARGRVAVEGELDLLWETPEG 1100


>gi|226320437|ref|ZP_03796004.1| DNA helicase [Borrelia burgdorferi 29805]
 gi|226234190|gb|EEH32904.1| DNA helicase [Borrelia burgdorferi 29805]
          Length = 698

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/544 (17%), Positives = 169/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFDNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +  +   R             
Sbjct: 270 -----KFYLVQNYRSNSNIVGIANEVISKNKNRYEKQITTQNSSNKRMKF---------- 314

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                      + +       I+  I                  
Sbjct: 315 --------------------LVFQSTSDEAEYFSNLLISNDIKT---------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D +SF+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLDKIISSLNDEDVNFNLFCASKKTLGLLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +V   + + +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYDELGKKLFEDNYINLSAFIEDVVIRFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGDFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|218249690|ref|YP_002374864.1| DNA helicase [Borrelia burgdorferi ZS7]
 gi|226321661|ref|ZP_03797187.1| DNA helicase [Borrelia burgdorferi Bol26]
 gi|218164878|gb|ACK74939.1| DNA helicase [Borrelia burgdorferi ZS7]
 gi|226232850|gb|EEH31603.1| DNA helicase [Borrelia burgdorferi Bol26]
          Length = 698

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/544 (17%), Positives = 165/544 (30%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFDNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +  +   R             
Sbjct: 270 -----KFYLVQNYRSNSNIVGIANEVISKNKNRYEKQITTQNSSNKRMKF---------- 314

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                      + +       I+  I                  
Sbjct: 315 --------------------LVFQSTSDEAEYFSNLLISNDIKT---------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISKFQHV 484
           +D +SF+ M+  P     +  + KI +  ++ +  +              N         
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLDKIISSLNDEDVNFNLFCASKKTLGLLKNRAKESLLLF 449

Query: 485 IKYIHELIHIAQ---FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           +    EL        + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYEELGKKLFEDNYINLSAFIEDVVIRFGLLDYYRKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGDFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|51598602|ref|YP_072790.1| DNA helicase [Borrelia garinii PBi]
 gi|51573173|gb|AAU07198.1| DNA helicase [Borrelia garinii PBi]
          Length = 698

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 91/544 (16%), Positives = 175/544 (32%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L+       ++  +  +   I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFADLIIKPILMLRHS---KSLKESVQSKFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYSD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFDNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+++ + V S  +N       +              G+ +  
Sbjct: 270 -----KFYLVQNYRSNSNIVSIANGVISKNKNRYEKQITTQN------------GSGKRM 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +V Q  S       +     D                                     
Sbjct: 313 KFLVFQSTSDEAEYFSNLLVANDIET---------------------------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           +   IKD++ L R ++++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYEREEIKDIVCLLRLLINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE---TVYEYIQKFANCGISKFQH----- 483
           +D ++F+ M+  P     +  + KI +  ++ +    ++   +K  +   ++ +      
Sbjct: 390 KDKIAFLRMINKPSRGIGKTTLDKIISFLNDDDVNFNLFCASKKTLSSLKNRAKESLLLV 449

Query: 484 --VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
             +   +   +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNIYDKLVRKLFEGNYINLSAFIEDVVIKFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGDFKSN-IFLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEALSEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LII 
Sbjct: 591 LIIA 594


>gi|257139612|ref|ZP_05587874.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
            E264]
          Length = 1272

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 126/1011 (12%), Positives = 276/1011 (27%), Gaps = 158/1011 (15%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
            +W      +  +      S+   +      ++ L   ++        + L    L    +
Sbjct: 242  IWRDERGVLDALLADAQPSLNQRSHKPDAVSEALDAWARYFEQASAVAALPRAALKLTQS 301

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
              +    +          +  +  +     +        +        T    L      
Sbjct: 302  SLEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRARWLSLVEQWLDTAPAELAQR--- 358

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ +  ++
Sbjct: 359  -KRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIFDTI 414

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                            LF VGD KQ+IYSF  A+                   +  +   
Sbjct: 415  FA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASARYT 454

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L ++ RST  I+   ++VF     A  L       +R         G+      V +   
Sbjct: 455  LAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDATDP 506

Query: 320  SQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDI 376
                     WT     D L +  +    A   A  I+ ++      +       + A DI
Sbjct: 507  LAGAGDFRVWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAASDI 566

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D   
Sbjct: 567  AVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGDLRR 622

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV------------ 484
                L S  F      ++++           +     +                      
Sbjct: 623  LRSALASDWFGLDAAALWRLEQGDAGPGGTEDAAGDASGNDGHARAAAAGAVAPPSADTD 682

Query: 485  ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFT 536
                ++       + +       +  +    +  ++ ++    E      + L E     
Sbjct: 683  AMGWVERFSRYRLLWRERGFAVMWRTLASELRIAERLMAGPDGERRVTDINHLAELTQAR 742

Query: 537  LRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +     +L+ L +   +      +    ++ N V+I+TVH +KGLE  +VF      
Sbjct: 743  ASAQPGIAPTLRWLAAQRFDGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLND 802

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                      +      +D+ G+ +                +   +    E  RL+YV +
Sbjct: 803  GGLREPPGSGLPDAREYHDESGVAVLHYGC--DEEAAERASREAAREQAAERARLVYVAL 860

Query: 656  TRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++     W A  
Sbjct: 861  TRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAVRWQALA 920

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK-------- 765
                     P+       +   +    +      +   +   I + S++ +         
Sbjct: 921  GGPVTLGALPVPARREPLEAGHDANATRAARRAKRGLRDAWRIASFSSLASAIARDESGV 980

Query: 766  -------------------------------------------GKTNLESLLSDNQTFNR 782
                                                        +   + +L+  +    
Sbjct: 981  ARAADDEMRPDHDALAAAVGADVLDAFDTLDAAGAIVEAAAIASEPAEDDILAFPRGAAA 1040

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------- 835
            G  +H+LL++                  +            L   +TRL+ +        
Sbjct: 1041 GECLHRLLELSDFSDASTWPPAAQRALHERPVEAEPALAGRLPAMMTRLVADLAATELVP 1100

Query: 836  --MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQI 871
               +         +E+           + +                      I G ID I
Sbjct: 1101 GMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFIKGFIDMI 1160

Query: 872  SISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
                   +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1161 VEHDGRFWIVDWKSNHLGTTPDAYGERALDAAMAHHAYHLQALLYTVALHR 1211


>gi|229004068|ref|ZP_04161870.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock1-4]
 gi|228757166|gb|EEM06409.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock1-4]
          Length = 687

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 101/658 (15%), Positives = 208/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVANLPGMNHAASRYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  ++        + +   YE+ K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVQAKTPVEQEFREVYERYEDVKQRYGYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++    ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETFYMLENN---APLLTQLQNRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFD--------DTTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFKKELYSVHEEGIQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I + + +            + KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQDKVASGER---------EYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R         S   +L +    
Sbjct: 400 ---SLLDQLTIHKVPFIKHGASQSFYEHSLIKPVLDQLRLAYEPFQIESLSSILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + + + I + I   +   P   
Sbjct: 457 RDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKINERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
              I+  K    +++         +   + E +   L      ++ +   +  +     +
Sbjct: 516 LKEIIKGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLEFISAAIQS 575

Query: 561 IKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
            K   +       + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMQQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHSSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RL+YV +TRA ++L I       ++K
Sbjct: 626 ----------------ANDRVTDTSEALEEERRLMYVAITRAKEELYISSPQFFRSKK 667


>gi|83720729|ref|YP_443363.1| exodeoxyribonuclease V subunit beta [Burkholderia thailandensis E264]
 gi|83654554|gb|ABC38617.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
            E264]
          Length = 1321

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 126/1011 (12%), Positives = 276/1011 (27%), Gaps = 158/1011 (15%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
            +W      +  +      S+   +      ++ L   ++        + L    L    +
Sbjct: 291  IWRDERGVLDALLADAQPSLNQRSHKPDAVSEALDAWARYFEQASAVAALPRAALKLTQS 350

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
              +    +          +  +  +     +        +        T    L      
Sbjct: 351  SLEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRARWLSLVEQWLDTAPAELAQR--- 407

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ +  ++
Sbjct: 408  -KRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIFDTI 463

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                            LF VGD KQ+IYSF  A+                   +  +   
Sbjct: 464  FA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASARYT 503

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L ++ RST  I+   ++VF     A  L       +R         G+      V +   
Sbjct: 504  LAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDATDP 555

Query: 320  SQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDI 376
                     WT     D L +  +    A   A  I+ ++      +       + A DI
Sbjct: 556  LAGAGDFRVWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAASDI 615

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D   
Sbjct: 616  AVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGDLRR 671

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV------------ 484
                L S  F      ++++           +     +                      
Sbjct: 672  LRSALASDWFGLDAAALWRLEQGDAGPGGTEDAAGDASGNDGHARAAAAGAVAPPSADTD 731

Query: 485  ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFT 536
                ++       + +       +  +    +  ++ ++    E      + L E     
Sbjct: 732  AMGWVERFSRYRLLWRERGFAVMWRTLASELRIAERLMAGPDGERRVTDINHLAELTQAR 791

Query: 537  LRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +     +L+ L +   +      +    ++ N V+I+TVH +KGLE  +VF      
Sbjct: 792  ASAQPGIAPTLRWLAAQRFDGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLND 851

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                      +      +D+ G+ +                +   +    E  RL+YV +
Sbjct: 852  GGLREPPGSGLPDAREYHDESGVAVLHYGC--DEEAAERASREAAREQAAERARLVYVAL 909

Query: 656  TRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++     W A  
Sbjct: 910  TRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAVRWQALA 969

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK-------- 765
                     P+       +   +    +      +   +   I + S++ +         
Sbjct: 970  GGPVTLGALPVPARREPLEAGHDANATRAARRAKRGLRDAWRIASFSSLASAIARDESGV 1029

Query: 766  -------------------------------------------GKTNLESLLSDNQTFNR 782
                                                        +   + +L+  +    
Sbjct: 1030 ARAADDEMRPDHDALAAAVGADVLDAFDTLDAAGAIVEAAAIASEPAEDDILAFPRGAAA 1089

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------- 835
            G  +H+LL++                  +            L   +TRL+ +        
Sbjct: 1090 GECLHRLLELSDFSDASTWPPAAQRALHERPVEAEPALAGRLPAMMTRLVADLAATELVP 1149

Query: 836  --MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQI 871
               +         +E+           + +                      I G ID I
Sbjct: 1150 GMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFIKGFIDMI 1209

Query: 872  SISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
                   +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 1210 VEHDGRFWIVDWKSNHLGTTPDAYGERALDAAMAHHAYHLQALLYTVALHR 1260


>gi|254442638|ref|ZP_05056114.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235]
 gi|198256946|gb|EDY81254.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235]
          Length = 665

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 109/677 (16%), Positives = 213/677 (31%), Gaps = 135/677 (19%)

Query: 35  VSLSMETGNPTILKKAQTLQQASQTQC-IEERFSLLSSFFLTQKFTPQKNIITQEINKKS 93
             L    G    L K  T+  A + +  ++     ++S F   K  P+   ++       
Sbjct: 107 HRLLRMHGEAIDLPKNFTILDAGEAETVLKHAVESVNSAFFKDKTHPKPGPLS------- 159

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
             +    + +++              F      +         YE+ K+   V+D++DL+
Sbjct: 160 -SIISMARNTRESI-----ERTILDFFPQHHDYIDQIDSFALAYEKRKRAQNVVDYDDLL 213

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +    LL   + +  +        +H L+DE QDT+++Q  ++  +              
Sbjct: 214 VFWLKLL---ETAPEVAEYYQNRFSHCLVDEYQDTNVLQAAIVDKMA-----------PH 259

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             + AVGD+ Q IYS+ GA  + +L           +      I  + +++RST +IL +
Sbjct: 260 HRIMAVGDDAQCIYSWRGANYENILTF--------PDRHPGAEIHRIEINYRSTPEILNL 311

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + V                       R  Q    +L     S                 
Sbjct: 312 ANAVIKN--------------------RSSQGFEKELRPHKASSQKP------------- 338

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
             + Q   A   A+ +   I  +I                ++I VL R       +    
Sbjct: 339 -YVVQAMDAREQAQFVITRIRGLIDEGR----------DPREIAVLYRSHFAALDMQMEL 387

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM-LKSPLFN-FSED 451
               +   +S          +   IKDL+A  R + +  D  +F+ + L  P     +  
Sbjct: 388 ----SRAGVSYQITSGVRFFEQAHIKDLVAHLRLVYNPADVSAFLRIFLLLPKVGEKTGQ 443

Query: 452 DIFK--ICTQRHETETVYEYIQKFANCGISKFQHVIKY------IHELIHIAQFCSPHDF 503
            ++   +   +       + ++       +       +      + ++  IA   SP + 
Sbjct: 444 KLYDHTLAVAKKHEIDFIDALRHEETTKKAPAAARADWESLALSLRDMKQIADTGSPDEV 503

Query: 504 FTLILGAKKG-RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
             + +        Q      +  ++ L   + F  R ++     +QELI+++        
Sbjct: 504 VQIAIDGWYSSYLQGAYANYSNRLEDLTSLVGFAARFDE-----MQELIAQITLLNSETS 558

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                +   +R+ TVH AKGLE  +VFL+      F  +                     
Sbjct: 559 GRMDESDEAIRLTTVHQAKGLEFDIVFLIGAADGFFPTRRSVDSGDT------------- 605

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                 EE  RL YV +TRA D+L +      +    S   T  
Sbjct: 606 ----------------------EEERRLFYVALTRARDELYVLYPKMNTKGGPSMFLTPS 643

Query: 683 DMVYDSFHNDERVKKIK 699
             + +         +I+
Sbjct: 644 RFLQELPTELFEPIRIR 660


>gi|326565387|gb|EGE15564.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis 103P14B1]
          Length = 1315

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 151/1017 (14%), Positives = 302/1017 (29%), Gaps = 158/1017 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +    +            K+    +IN+      + L    + ++ + ++ N Y   
Sbjct: 328  DALKLIDAIIKAMDKDWQIFNKSANPSDINQFLALPLQALSDIANVYLTLSEQTNLYHTH 387

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                  L+    +    E     +    F   ++  N+ L+       +  +I       
Sbjct: 388  ICRHIILSAKSQIAQRLET----HGQTTFTLQMVRLNEALRNSPA---LARQIRHHYPVA 440

Query: 181  LIDEVQDTSLIQWEVIRS-------------LTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            LIDE QD + +Q E+I               +  +   G+        L  VGD KQ+IY
Sbjct: 441  LIDESQDINGLQVELIELVYLNEIANYHKNLIRYEQIGGEKPKLPRGFLLLVGDPKQAIY 500

Query: 228  SFHGAEPKRVLREKRI-NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQ 285
             F G +       K   NQ     A      + L ++ RS+  ++  ++  F    ++A 
Sbjct: 501  RFRGGDVTNYNLIKHYGNQDLLIKAPLMNQSLSLTVNRRSSKALIEALNAWFDNNHQDAV 560

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                +    I ++  +  + G    W+           P       +FD +     A+  
Sbjct: 561  ANHANLGQGIFYQQIQAHKDGGGIHWQSDAYADYYGKYPIAV---LHFDHIEAGQKAAQR 617

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +IA  I+ ++  D        + I  KDI VL R       I      L     I  +
Sbjct: 618  AEQIARHINTILQGDHTLHG---QKILPKDIAVLGRTADTLDRIKSELDQL----NIPAI 670

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                  +    A  DL+AL   IL      +    L S L   +      I     +   
Sbjct: 671  IPKEMNIFITQAADDLLALIGAILQPNHSENLGKFLVSSLVGITLKQAINIIEPNDQ--- 727

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-------I 518
              + +    +   +   H++ Y+ +     Q           L                 
Sbjct: 728  --QALDNDLSETQNLKTHLLAYLKKSYEKWQKFGVSSALAYALHHSPIDYDDDKSPWLKA 785

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMT 576
            +  G   +  L+  +       Q     +     +                + + V +MT
Sbjct: 786  ATQGERYLVDLERLVALVSEQSQLHEMRIIAWYHKQMNADVDSHNKRPILPSESGVNLMT 845

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P+V+++    +  +      + I P  N +    + + Q    +       
Sbjct: 846  IHKSKGLEFPIVYVIGMDEKPKNEN---GLTIYPYTNHNFQRCLSLSQGNLIDENY--YY 900

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN----D 692
               ++   +E  RL YV +TRAS+QL I       ++K S +   Y  +  +        
Sbjct: 901  HINQQELIDEIRRLGYVALTRASEQLYIVG--GDLSKKTSKEMPLYQWLDCAGEKILSLP 958

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +R+K       + + +  +  + T  P  +          +   Q   +   S       
Sbjct: 959  DRLKGWVDWIDLTEADLFSQPYQTKLPNLSAKHYAPWDMVMTKTQFFGEYKTSFSALITR 1018

Query: 753  EPY-ILNPSTIDTKGKTNLESLLSDN----------QTFNRGLIIHKLLQVIFT------ 795
                 ++P   D    + L  + + +          +    G  +HK++Q + T      
Sbjct: 1019 LDKSAISPDEADIDQLSVLTDMAASDQFDDIRTSFFKGSLAGDFLHKVMQFLPTDRLALA 1078

Query: 796  -------------LPEHKRKNFITSYC-TKNAKLWP---------AKEYKNLLLSITRLL 832
                           + ++      Y  T+ A+            A ++  L+  I +L 
Sbjct: 1079 SLHDAHRIISGVIYEQGRKLGIAERYLPTRPAQQIGTRINSNEHQADDHTKLVAWIYQLA 1138

Query: 833  ENP---------------------------------MMTTAMSCDSYSEVSVSGKINCPK 859
              P                                  +       S  ++ +        
Sbjct: 1139 YAPFRASHRSLMSLPMTVQLRELSFTLGLGDTFSITRLNAVFKAHSDKDLVLLDDDYHTM 1198

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKI 910
            +   + G ID +    +  FI +YK+++      E+             +  Q +IY+  
Sbjct: 1199 RYRYLRGEIDLVYECDRRFFIVDYKSNYLGSTPDEYHDHAMAAVMDKVGYWLQAAIYQVA 1258

Query: 911  LKDSYPNK------SLVCLL-----IYVS--------EPKVFIIPQNKLNKAFAEIS 948
            L      +      +    L     +++            +   P   L  A  EI 
Sbjct: 1259 LHRLLKIRLKDYVGNEAAYLGAVEYVFLRGVQEGNEKTGHLCWQPPLSLILALDEIL 1315


>gi|296272052|ref|YP_003654683.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
 gi|296096227|gb|ADG92177.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
          Length = 911

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 137/896 (15%), Positives = 276/896 (30%), Gaps = 204/896 (22%)

Query: 47  LKKAQTLQQASQTQCIEE-------RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
           L+ A  L++  Q              F       L       K  +T+E++  S D K+ 
Sbjct: 195 LEIAFRLKKHIQNCPSASNAALKSVDFENFEELLLKG-----KTWLTKEVSTDSRDFKKC 249

Query: 100 LKKSQDEFIKIRD-------RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
             +  ++  +          +  +     S      L K     Y + K       F D+
Sbjct: 250 SNEEFEQNFQELKMQISNYYKLRSSYSLSSLYELYKLFKDFKKSYNKNK---NYFTFNDI 306

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
                +LL  +    ++ +++D + NHILIDE QDTSL+Q++++  L E+   G +    
Sbjct: 307 SNYVYELLSSKIDKDFLYFRLDSKYNHILIDEFQDTSLLQYKILEPLIEEALSGNS--EK 364

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
            ++ F VGD KQSIY F G         KR      +    +     L  +FRS  +I+ 
Sbjct: 365 FKSFFYVGDIKQSIYRFRGG--------KRELFDFVSKKHNQIETEILNTNFRSAKNIVE 416

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
            V++ F    N +           +      + G V++                      
Sbjct: 417 FVNRAFINLNNYE----------YYEQLSNIENGYVEVIS-------------------- 446

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
            D L +E     +A  IA  I   I                  I +L     D   +   
Sbjct: 447 DDKLKEEEKYQTIASTIAKLIRKNID--------------PNSIAILTYTNDDVLELYSY 492

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
              +    KIS        L +   +K  +   +++  +E+                +++
Sbjct: 493 LSKMFPTLKISTEMTS--KLINQENVKACINAIKYLYYKEN--------------IYKEN 536

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           +  I      T+  +++  +                             +    +     
Sbjct: 537 LNAIIGNAPNTKLDFDFDLE------------------------ENKVFELVLKVAKYFN 572

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
                         D + +F+  +            +++  + +         +     +
Sbjct: 573 ILD-----------DNVIKFVEESKNF--------TDIVDFVYEVDLMETPIENKEQIGL 613

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           +I+T+  +KGLE   V L+D       +     +    S      +   I   ++ +   
Sbjct: 614 QILTIFKSKGLEFDTVILLD--RIKNKNADRSSLLFEYSGVYLDNLYYKISNLENFDKNY 671

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
              +   K    E+   +LYV +TRA   L I         KK  +  +  +  +S    
Sbjct: 672 KRALNKEKALQAEDELNILYVALTRAKSNLFIF--------KKEEKSVFDLLGLESCKIG 723

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           E V      +S  K E I Y+                                     + 
Sbjct: 724 ELVINEFTKDSNEKIEKIEYK----------------------------------PLSLG 749

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
                +    D   +          +    G+  H  L+++      + +  +    ++ 
Sbjct: 750 RQKNKSVKDYDEDFEL---------KARYFGIATHYCLEMMNDFTIEQLEYSLNLTKSRY 800

Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
           +      ++  +   I+ L++N    + +   +   E S+                ID +
Sbjct: 801 SVYLKDNDFDEIKQRISLLIQNEEFNSFLEDANFLREQSLIYNGEIK--------IIDLL 852

Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
              +   +IF+YKT       ++     H  Q+S Y+K +K+   +  +   L+Y+
Sbjct: 853 IEKENKYYIFDYKT------TVQENTE-HEKQISFYKKAIKEISNSDEVYAYLVYL 901


>gi|295105936|emb|CBL03479.1| Superfamily I DNA and RNA helicases [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 732

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 107/768 (13%), Positives = 230/768 (29%), Gaps = 136/768 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    I +         ++  + +    ++     +        ++       +  +
Sbjct: 78  AAGEMRRRIRRLTGDNDTGYINTFHGFCVSVLQEDAHALQ-----YPKSFLVLDNADIDA 132

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           +L   +  +  T +     +  +        ++ K ++     RD               
Sbjct: 133 MLQVVYEERGLTLRDMTFAKARD------MIEIMKLKERPGYYRDMLAMPLEDLRQKYLD 186

Query: 128 TLAKY---LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
             A        +  + KK    LD+ DLI+    L ++      IR K  + + ++++DE
Sbjct: 187 AEAAKDIIFYGYLYQEKKCFG-LDYNDLIVFVLYLFEQNPA---IRSKWQRRLEYVMVDE 242

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD   +Q E++  L              + LF VGD  Q+IY++ GA+ + +L   +  
Sbjct: 243 FQDIDGLQHELMEVLAGY----------HKNLFVVGDPDQTIYTWRGADVRYLLDFDKRF 292

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            K           + +  ++RS   ++ V + +                  R  ++R+  
Sbjct: 293 PK--------THTVMMLENYRSAPRVVAVANSLIEKNRERM--------PKRLVAARLAH 336

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             TV                                SA+  A  IA     +        
Sbjct: 337 GPTVWHH---------------------------AKSAADEADWIAQGALALHVEG---- 365

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 +  +D+ VL R    +  +           ++    +          IKD ++ 
Sbjct: 366 ------VAFRDMAVLYRAHYASRPVEEAL----LRAEVPHAVHSGVPFFGRREIKDALSY 415

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG---ISK 480
            R +    DDL F  +   P  N  +  +  +         ++YE +   A+      +K
Sbjct: 416 LRLVA-YRDDLDFARVANVPKRNLGQRRMAFLRQQADERGCSLYEALALAADDDLFKRTK 474

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            + ++  I       +     +    +L      +   +    E +D L E        E
Sbjct: 475 ARQLLDLIERFHSSYEGRPVSEVLAAVLSESGYERALRTEGSQERLDNLAELKQSVYEFE 534

Query: 541 QN--SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  +L+  ++ +  +        +   ++VR+MTVH AKGLE   VFL      V 
Sbjct: 535 TTCGEEVTLEHYLAHVALFSNADAMDDAQ--DKVRLMTVHAAKGLEFRHVFLCSMSEGVL 592

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                           EE  RL +V MTRA
Sbjct: 593 PSRKTSTP-----------------------------------QGMEEERRLAFVAMTRA 617

Query: 659 SDQLIICKHSNTSNEKKSNQRTWY-------DMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            D L + +    S+E  +   + +        + +    +D ++   +   ++       
Sbjct: 618 RDGLYLTEAEGRSHEGAARYPSRFLLDIDPAALEFSDKPSDPQMADARSVYALTDRWIAD 677

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                       +         +      K+ +    + ++ P  ++ 
Sbjct: 678 LVRDARFSVGDRVVHAVFGAGRVSAVDTGKRAYEVEFDGMDTPRTISF 725


>gi|240016125|ref|ZP_04722665.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA6140]
          Length = 1200

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 129/936 (13%), Positives = 266/936 (28%), Gaps = 160/936 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L +YLN+   E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +      + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +    +           +      +     
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKA 529

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKR 383
             ++                  A   A  I+  +   +    N K R +Q+ DI VLVR  
Sbjct: 530  NKDVL------------RRRAADYCADEIARALNEASGGRLNFKGRPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +I+   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMISAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                       + I Q       
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDIWQKYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +     K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +     +++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRTYACEKDGITMLKRNWRRVADNAPAGTDFAFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  GNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+         +++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +   ++ D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY----- 898
             EV  + +  ++    +  ++G ID +       I I +YK++H      + +       
Sbjct: 1083 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQ 1142

Query: 899  THIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             +  Q  IY       +  +     ++    +++  
Sbjct: 1143 HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|158320846|ref|YP_001513353.1| UvrD/REP helicase [Alkaliphilus oremlandii OhILAs]
 gi|158141045|gb|ABW19357.1| UvrD/REP helicase [Alkaliphilus oremlandii OhILAs]
          Length = 678

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/558 (19%), Positives = 196/558 (35%), Gaps = 112/558 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   YE  KK +  +DF+D++     LL  +     +   I     +ILIDE QD + 
Sbjct: 170 ERVVFSYETYKKDSFKIDFDDMLTKCYQLLVNQPS---VLQSIRDAYQYILIDEFQDINS 226

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+E+I+ +            S + LF VGD+ QSIYSF GA P  +L   RI +     
Sbjct: 227 IQFEIIKLIVA----------SRKNLFVVGDDDQSIYSFRGANPNFILEFDRIFKN---- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L L++RS   I+   +K+ S  E            +  +       G V++
Sbjct: 273 ----TKKIILNLNYRSQEIIIDTANKLISNNEFR----------VDKKMISTKNPG-VEI 317

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                   + +                           ++  IS ++             
Sbjct: 318 QFSRPKTREMENQE------------------------VSEVISTLLEEG---------- 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFIL 429
              +DI V+ R    +  I         D  I  +  D  + + +H   KD++A  +  +
Sbjct: 344 YTYRDIAVIYRTNILSSSIVDSF----LDNNIPFISRDNIYNIYEHWMAKDIVAYLKATV 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +  D  +   ++  P    +            +  T            ++    +   + 
Sbjct: 400 NLNDREALKRIINRPTRYITNKAKKDADEYHKDFITSLRVKGNLMPYQVTYLDKLEIDLK 459

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSS 546
            L  +    + H     I G       +    G       ++LDE  + +L++   +   
Sbjct: 460 NLKSMDAKEAIHYIRKDI-GYDDYINNYCLEKGIHGEGLLEILDELEDISLKH--GNTME 516

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
               I+E ++     KR+  A  N+V ++T+H+AKGLE  VV +++   ++  H      
Sbjct: 517 FLNHINEFKKSLQENKRSSYAKGNQVELLTMHSAKGLEFKVVIIIEALEEIIPHS----- 571

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                         K   + + EE  RL YV +TRA ++L I  
Sbjct: 572 ------------------------------KSQDEESIEEERRLFYVAITRAKERLYIYS 601

Query: 667 HSNTSNEKKSNQRTWYDM 684
             +  ++K    R   +M
Sbjct: 602 PMSKYDKKADVSRFIGEM 619


>gi|315926520|gb|EFV05901.1| DNA helicase II [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 494

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 159/433 (36%), Gaps = 83/433 (19%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            N+I +DE QDT+ +Q++++++L                +  VGD+ QSIYS+ GA+ + 
Sbjct: 19  YNYITVDEYQDTNTLQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIEN 68

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L  +   +           +++L  ++RS   IL   + + S  E   G +        
Sbjct: 69  ILNFQNDFKN--------VKLVKLEQNYRSVGTILQAANNLISHNEQRLGKT-------- 112

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                            + ++   +     ++     + L            IA  +  +
Sbjct: 113 ----------------LICTKDTGENIKILKNENEKDEGL-----------YIAQEVKKL 145

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           + +           ++AK+I +L R    +  I           +IS          + L
Sbjct: 146 LNSG----------VEAKEIAILFRVNALSRAIEEAF----MKKQISYKLLSGMRFYERL 191

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA- 474
            IKDL++  R IL+  DDLSF  ++  P  +  E  +  +    +    ++++ + +   
Sbjct: 192 EIKDLISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDG 251

Query: 475 -------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
                      ++    I+ IH L          D    +   K    +     G+E I 
Sbjct: 252 GVGILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSE--QDDGDERIR 309

Query: 528 VLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            LDEF        +    +SL++L+SE+                 V +M++H +KGLE  
Sbjct: 310 NLDEFYANLREKLKEDPKASLEDLLSEISLLSDQDNLDEE----CVCLMSIHASKGLEFD 365

Query: 587 VVFLVDTGSQVFS 599
            VF++      F 
Sbjct: 366 YVFIIGFDEGFFP 378


>gi|317472659|ref|ZP_07931974.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316899836|gb|EFV21835.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 618

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 109/603 (18%), Positives = 201/603 (33%), Gaps = 128/603 (21%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           ++ D  + L+    E   ++ +  +   + S   + ++ + +   Y E  +KN  +DF+D
Sbjct: 122 ETGDEPDFLRSLISEISLVKGQLLSMDYYHSQSCADSVFQLIYKQYNEKLRKNQWMDFDD 181

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +++ T  LLK+      +      +  +ILIDE QD S IQ+E+I+ L           +
Sbjct: 182 ILVYTYSLLKE---REDLLAAWQNKFQYILIDEFQDISPIQYEIIKMLA----------T 228

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               LF VGD+ QSIY F GA+P+ +L   +          +    I+L +++RS+ +I+
Sbjct: 229 PRNNLFIVGDDDQSIYRFRGAKPEIMLGFPKDY--------KDSEKIQLDVNYRSSPEIV 280

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               KV  + +                               + S  D +   +  ++ +
Sbjct: 281 EASQKVIRVNKKRFDKE-------------------------IRSCRDREVPIELRTFKN 315

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
             +              +A  + +                  ++  +LVR       +  
Sbjct: 316 QQEECT----------YVAKRLRDEYEKGHP----------YEESSILVRTNLGARTMLG 355

Query: 392 LTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                   Y I     D    L +H   +D++   R  L      +F+ ++  P    S 
Sbjct: 356 KLME----YNIPFTVKDGIPSLFEHWIARDIIDYMRMALGDRRRSTFLRIMNRPKRYISR 411

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           + I +      +         K            I  + E + + +  +P    T I  +
Sbjct: 412 EYIDQPEISFED--------LKEKTRDKEWLYDYIDELEEDLRLLKDMTPFLAVTYIRKS 463

Query: 511 KKG------RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                      +       E+ DVL+E        +     + +E    + +Y   +K  
Sbjct: 464 VGYNAFLSEYARIRKLKEEELTDVLEELQETARGYD-----TYEEWFDFMRRYTEELKAQ 518

Query: 565 HSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             +       V I T+H+AKGLE   VFL+D    V                        
Sbjct: 519 SESRNQGKQGVVISTLHSAKGLEYERVFLIDVNDGVIP---------------------- 556

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                          K +K    EE  R+ YVGMTRA   L +       N+        
Sbjct: 557 -------------YKKAVKTEELEEERRMFYVGMTRAKKYLHVFSVEKMYNKDSKVSDFI 603

Query: 682 YDM 684
             +
Sbjct: 604 LPL 606


>gi|30261334|ref|NP_843711.1| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. Ames]
 gi|47777916|ref|YP_017853.2| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|30255188|gb|AAP25197.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. Ames]
 gi|47551621|gb|AAT30328.2| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis
           str. 'Ames Ancestor']
          Length = 657

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 207/659 (31%), Gaps = 120/659 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 74  QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 133

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 134 ILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 192

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L       
Sbjct: 193 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------ 243

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 244 ----SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 291

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 292 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 334

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 335 ------------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVS 367

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R ++      S   +L +   
Sbjct: 368 R---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYI 424

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 425 GRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKK 483

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 484 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQ 543

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 544 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 594

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 595 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 636


>gi|325142010|gb|EGC64442.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
            961-5945]
 gi|325198004|gb|ADY93460.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis G2136]
          Length = 1204

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 131/942 (13%), Positives = 267/942 (28%), Gaps = 168/942 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L  YLN    E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGYDLNALEEAEEATIIRLQLDLIGYLNRSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +   ++R              S+   +   
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAE------------SRLSPERPA 515

Query: 325  QQESWTSYFDSL--PQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVR 381
             Q  W    D+    ++      A   A  I+  +        N K   +Q+ DI VLVR
Sbjct: 516  VQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVR 575

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +++   +      ++  V   R  +        L AL  F L      +   +L
Sbjct: 576  THNEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVL 631

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +F +    +        E     E                   +             
Sbjct: 632  TSGIFGYDAQQLHDFNQNESEILHWAE--------------SARTALDNW----NQYGIF 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPP 559
                          + +SR     +    + L        +  + ++L + + +      
Sbjct: 674  AAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLGDQISLAE 733

Query: 560  TIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        ++ + V+I+T+H +KGL+ P+V+         +     ++    +   
Sbjct: 734  NNSNDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRT 793

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +               +  D  K        E  RLLYV +TRA +QL I    ++    
Sbjct: 794  ELLAKAQ---------LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTAD 844

Query: 675  KSNQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                     +            +   D      +    +  +     +++       P  
Sbjct: 845  NPLAYLIEGLPQDSRETVRRAYACEKDGITMLKRNWQRVTDNAPADTDFAFTEDAPPPAA 904

Query: 726  REETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILN 758
                  Q  +                                ++   P  +         
Sbjct: 905  YRGNAGQTAEFAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVAAM 964

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP 817
            PS  +T   ++  S+    +    GL +H++L+          ++  I     K    + 
Sbjct: 965  PS--ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYG--FE 1020

Query: 818  AKEYKNLLLSITRLLENP-------------------------------MMTTAMSCDS- 845
                  +        + P                                +    + D  
Sbjct: 1021 EMWLPAVAEMAEACRKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDI 1080

Query: 846  -YSEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------E 892
               EV  + +  ++    +  ++G ID +       I I +YK++H             +
Sbjct: 1081 RLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLGADASAYTQQAMD 1140

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
                 + +  Q  IY       +  +     ++    +++  
Sbjct: 1141 EAVTHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|226948693|ref|YP_002803784.1| hypothetical protein CLM_1591 [Clostridium botulinum A2 str. Kyoto]
 gi|226844125|gb|ACO86791.1| hypothetical protein CLM_1591 [Clostridium botulinum A2 str. Kyoto]
          Length = 670

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 100/555 (18%), Positives = 199/555 (35%), Gaps = 121/555 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YEE K K  +LDF+DL IN   LLK+ +    I    ++   +IL+DE QD   +Q  ++
Sbjct: 165 YEEYKDKKELLDFDDLQINMFKLLKEDE---RILKGYNKLFKYILVDEFQDCDTLQINIL 221

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L+E             +LFAVGDE Q IYSF G++P+ ++      +K          
Sbjct: 222 QMLSE-----------GNSLFAVGDEDQCIYSFRGSKPECMVDFNHYFKK--------GE 262

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I L  ++RS  +I+ +   +    +       ++                         
Sbjct: 263 KIYLRYNYRSPKNIVGISKNLIKNNKLRNNKRIEAYNDYDKN------------------ 304

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                         S+ +   Q       A  I+  I+++I                KD+
Sbjct: 305 ----------IVLKSFLNEREQ-------AEEISKIINDIIKKG----------YGYKDV 337

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R   ++  +T     L    +I     D  +   +H   +D++A  +  +   D  
Sbjct: 338 AILYRTNMESRSLTD----LFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKK 393

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ ++ ++   ++   + ++ +++  +    + ++ ++ + + I+  
Sbjct: 394 SFLKIINKPFRYISKLNVERVRRYKYAKNS-FDILKEQKDIQPFQIKN-LENLEKDINKM 451

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
              S  D    I+      +              E++ ++DE             +S+  
Sbjct: 452 NKMSAQDAIGHIVHNLGYEEYIKEYSERIKIDKEELLQIVDELKEAAEEY-----TSILT 506

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +  +E+    I +    N + V + T+H  KG+E   V +V+       +         
Sbjct: 507 FLVHVEEVEKEINK-KEINKDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYS-------- 557

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      K  ++   EE  RL YVG+TRA + L +     
Sbjct: 558 ---------------------------KADEEVNIEEERRLFYVGITRAKENLYLTVPKV 590

Query: 670 TSNEKKSNQRTWYDM 684
              + K N     + 
Sbjct: 591 IRGKNKENSNFIKEC 605


>gi|223888779|ref|ZP_03623370.1| DNA helicase [Borrelia burgdorferi 64b]
 gi|223885595|gb|EEF56694.1| DNA helicase [Borrelia burgdorferi 64b]
          Length = 698

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/544 (17%), Positives = 169/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFDNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +  +   R             
Sbjct: 270 -----KFYLVQNYRSNSNIVGIANEVISKNKNRYEKQITTQNSSNKRMKF---------- 314

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                      + +       I+  I                  
Sbjct: 315 --------------------LVFQSTSDEAEYFSNLLISNDIKT---------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D +SF+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLDKIISSLNDEDVNFNLFCASKKTLGLLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +V   + + +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYDELGKKLFEDNYINLSAFIEDVVIRFGLLDYYRKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGDFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|325131981|gb|EGC54680.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M6190]
 gi|325137812|gb|EGC60387.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis ES14902]
          Length = 1204

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 132/982 (13%), Positives = 280/982 (28%), Gaps = 167/982 (17%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE--KLKK 102
            +  +    L+Q + +  +    + L    L       +  + +     +    E  KL  
Sbjct: 271  SFAELFDALEQKALSPDLPFLEAKLHERLLKLASDKLEAGLKKGKTPDAAVFAELQKLAD 330

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             + +   + +      +       L L  YLN    E KK      F+DL+++ +  L  
Sbjct: 331  FRRDLDALEEAEEATIIRLQ----LDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTD 386

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               +  +   + +     LIDE QDT  +Q+E+ + +           +  R LF VGD 
Sbjct: 387  NPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---------IAQNRPLFLVGDP 437

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQ+IYSF GA+    L+                    L  ++RS A ++  +  +F + E
Sbjct: 438  KQAIYSFRGADIYAYLQAAED----------ARHRYTLATNYRSHAALIGSIGALFRLKE 487

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                L     + +   ++R     + +     V       N +            ++   
Sbjct: 488  RPFVLENIGYSEV--GAARAESRLSPERPAVQVRWLHENDNEK----------ANKDVLR 535

Query: 343  SILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               A   A  I+  +        N K   +Q+ DI VLVR   +  +++   +      +
Sbjct: 536  RRAADYCADEIAHALNEAAECRLNFKGCPLQSGDIAVLVRTHNEAVMVSAALK----KRQ 591

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            +  V   R  +        L AL  F L      +   +L S +F +    +        
Sbjct: 592  VQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDAQQLHDFNQNES 651

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E     E                       +                       + +SR 
Sbjct: 652  EILHWAESA------------------RTALDNWNQYGIFAAMQQFSQTHGIETRLLSRN 693

Query: 522  GNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRI 574
                +    + L        +  + ++L + + +                  ++ + V+I
Sbjct: 694  NGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNSGDNRAIRLESDEDLVKI 753

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            +T+H +KGL+ P+V+         +     ++    +   +               +  D
Sbjct: 754  VTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ---------LSED 804

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY-------- 686
              K        E  RLLYV +TRA +QL I    ++             +          
Sbjct: 805  EQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRQ 864

Query: 687  -DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP----- 740
                  D      +    +  +     +++       P        Q  +          
Sbjct: 865  TYDREKDGIAMLKRNWRRLTDNAPAGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPERR 924

Query: 741  ----------------------KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                                  ++   P  +         PS  +T   ++  S+    +
Sbjct: 925  FRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPS--ETPTASDGISIHDFPK 982

Query: 779  TFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-- 835
                GL +H++L+          ++  I     K    +       +        + P  
Sbjct: 983  GTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYG--FEEIWLPAVAEMAEACRKTPLT 1040

Query: 836  -----------------------------MMTTAMSCDS--YSEV--SVSGKINCPKKDI 862
                                          +    + D     EV  + +  ++    + 
Sbjct: 1041 GAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNG 1100

Query: 863  IISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILK 912
             ++G ID +       I + +YK++H             +     + +  Q  IY     
Sbjct: 1101 FLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEAVAHHHYYLQALIYAVAAA 1160

Query: 913  DSYPNK-----SLVCLLIYVSE 929
              +  +     ++    +++  
Sbjct: 1161 RYFKLRGQPPAAVSVRYLFLRG 1182


>gi|313906068|ref|ZP_07839420.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
 gi|313469113|gb|EFR64463.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
          Length = 653

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 97/573 (16%), Positives = 176/573 (30%), Gaps = 122/573 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  K++N +LDF+D+I    +L  K         K  ++  ++L+DE QD
Sbjct: 157 EIFRKVYELYDSWKQENRMLDFDDIITKCYELFTK---RPDYLAKWQKKFRYLLVDEFQD 213

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            S +Q+E++R L                LF VGD+ QSIY F GA P  +L+        
Sbjct: 214 ISPLQYEIVRMLAA----------PENNLFIVGDDDQSIYRFRGASPGIMLKFPEDYP-- 261

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST +IL     + +        +                   
Sbjct: 262 ------GAKVIALEENYRSTPEILAAAGSLVAHNHKRYSKNIRPVNPS------------ 303

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            +   +  + DS                     I          
Sbjct: 304 ----------------GEPVVYQRFEDSR-----------------KECIHLAQSLRKEN 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGR 426
           ++    +++ VL R                  Y+I     D    + DH   +D+ A   
Sbjct: 331 EKGTPFEEMAVLFRTNVGCREAVEQLMA----YQIPFTMGDVLPCIFDHWIARDIFAYMD 386

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                     F+ +   P    S D  +            YE                ++
Sbjct: 387 LGAGSRKRGDFLRIYNRPNRYISRDAFYDPVISFENLYIYYE--------DKEWMCRRVE 438

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG------NEVIDVLDEFLNFTLRNE 540
            +   + +    +P+     I       +      G       +++ VLDE +       
Sbjct: 439 QLEADLDMVGRLAPYGAINYIRREIAYDEYVREYAGARNIPVEDLMQVLDELMESARNY- 497

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             SY   ++ I++  +     K+  +     V + T+H +KG+E   V+++D    +  +
Sbjct: 498 -TSYEEWKQAIADYREKLEQQKKRRNREPEGVTVATLHASKGMEYDHVYILDVNEGIIPY 556

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                               K +  +  EE  R+LYVGMTRA  
Sbjct: 557 H-----------------------------------KAVLDADLEEERRMLYVGMTRARH 581

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            L +   S    +K        ++  D     E
Sbjct: 582 LLHLYSVSERYEKKTDPSPFLKEIFGDGSGAGE 614


>gi|228996423|ref|ZP_04156064.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock3-17]
 gi|228763306|gb|EEM12212.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock3-17]
          Length = 687

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 96/610 (15%), Positives = 200/610 (32%), Gaps = 107/610 (17%)

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNA 135
                K I+ ++I K+     +   ++    I +   + N  K  ++        + +  
Sbjct: 153 ANEKHKQIMIKKILKELRLKDDYDAETMLAMISLEKNKLNRPKDVQAKTPVEQEFREVYE 212

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            YE+ K++   +DF+D+++ T  +L+     A +  ++    ++I +DE QDTS  Q+E+
Sbjct: 213 RYEDVKQRYGYIDFDDILLETFYMLENN---APLLTQLQNRFHYIEVDEFQDTSYAQYEI 269

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L           S    LF  GD+ Q+IY + GA  + +L   +             
Sbjct: 270 VKLLA----------SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFD--------DT 311

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
           +II L  ++RS   I+ + ++V  + +        S      +        T+       
Sbjct: 312 TIIALNTNYRSNPFIVGLGNEVIKLNQERFKKELYSVHEEGIQPFYARPATTLD------ 365

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                                         A +I   I + + +            + KD
Sbjct: 366 -----------------------------EANQILQLIQDKVASGER---------EYKD 387

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R    +     L   L       +         +H  IK ++   R +       
Sbjct: 388 FCLLYRTHSVSR---SLLDQLTIHKVPFIKHGASQSFYEHSLIKPVLDQLRLVYEPFRIE 444

Query: 436 SFVCMLKSPLFN----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           S   +L +         S  +  +         ++  ++    +    + + + + I + 
Sbjct: 445 SLSSILPTMYIGRDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKINERI-DF 503

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQNSYSSLQ 548
           I   +   P      I+  K    +++         +   + E +   L      ++ + 
Sbjct: 504 IKFIKELEPKKALKEIIKGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIP 563

Query: 549 ELISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             +  +     + K   +       + V +M++H AKGLE P VFL+     +  H    
Sbjct: 564 AYLEFISAAIQSQKEMEALKTMQQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHSSSL 623

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           K                           ++          EE  RL+YV +TRA ++L I
Sbjct: 624 KD--------------------------ANDRVTDSSEALEEERRLMYVAITRAKEELYI 657

Query: 665 CKHSNTSNEK 674
                   +K
Sbjct: 658 SSPQFFRGKK 667


>gi|312891088|ref|ZP_07750611.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
 gi|311296396|gb|EFQ73542.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603]
          Length = 1053

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 133/935 (14%), Positives = 283/935 (30%), Gaps = 161/935 (17%)

Query: 45  TILKKAQTLQQASQTQCIEERFSL-----------LSSFFLTQKFT-PQKNIITQEINKK 92
           + L  A   ++       +                L S F T K       +I + + + 
Sbjct: 123 SDLDAALLFRELVDDLPNDHVLKRFTGDVYYDVPRLKSLFSTMKREGWGVAMIQKAVEEY 182

Query: 93  SPDL--KEKL--KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL--NAHYEEAKKKNCV 146
             D+  +++   K++  +            +  +T    +L   +    +Y+   K++  
Sbjct: 183 LTDIPFRDEFVYKRANAKAGIKIGDPKQKDIDAATEKMKSLLAAVSEYQNYDAKMKRDGK 242

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            D++D+II      ++ +    I  +  +   +IL+DE QDTS  Q E+++ +   +   
Sbjct: 243 YDYDDMIIWVLKAFREDEE---ILRRYQERYQYILVDEFQDTSGSQNELLKFMLAYWET- 298

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    +F VGD+ QSI+ F GA  K +L                 + + L  ++RS
Sbjct: 299 -------PNVFVVGDDDQSIFKFQGANMKNILDFANDYVA-------TLNTVVLKHNYRS 344

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              IL +   +                 ++             L  +   Q  +  + + 
Sbjct: 345 NQHILDISRVLIDNNNERLTKQLSLDKNLQ-----AAHPRFKDLVVEPTIQEYANPDQEV 399

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                                 +A  I  ++   T          +  +I V+ R     
Sbjct: 400 VD--------------------VAMQIEKLVSKGT----------EPGEIAVIYRNHSQV 429

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED-----DLSFVCML 441
                      +   I+V    +  + +    + ++ + R++  + D     D     ++
Sbjct: 430 ----DELVHFLDQKNIAVSTKRKINIIEEPFGEKIINILRYLAMELDSPYSGDELLFEIM 485

Query: 442 KSPLFNFSEDDIFKICTQRHET-----------ETVYEYIQKFANCGISKF--------- 481
               FN    +I K   +  E             ++  +I +      +           
Sbjct: 486 HYDFFNIPPIEIAKASIKVSEDNFGTYKSGLSKTSLRRHIAEMRTPTQTGLFDPVPNLEM 545

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNE 540
           ++++  +  L+  A   +   FF  ++      +  + +      + +L    NF     
Sbjct: 546 KYLVSNVDYLLKAAVSLTLQQFFQQMIAKTGILKYIMQQPNKGWYMQILTSIFNFLKDES 605

Query: 541 QNSYS-SLQELISELEQYP----PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           +     S  + ++ ++                  N V  MT H +KGLE   VFL+    
Sbjct: 606 RKKPDISAADFVALIDLMKKNKISLELNQVIFTENGVNFMTAHGSKGLEFEHVFLIGCSK 665

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
           +++  K        P                               + +EE  RL YV +
Sbjct: 666 KIWDGKGRNMGFSYPDTLTQAP--------------------ADDIAQKEESRRLFYVAL 705

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA   L+I       N K      +   +    H   +  ++         E    ++ 
Sbjct: 706 TRARQCLMISYAGKDKNGKDQEASQFIGEILAETHLQVKHPQV--------GEDAMLDFY 757

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
           +         + E I +    Q +     S           L     +     + +S   
Sbjct: 758 STQFSEADKPKVELIDKNYINQLLQGYTLSVTHLSNYLDCPLRFYFQNLIRVPSGKSP-- 815

Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFI---------TSYCTKNAKLWPAKEYKNLLL 826
                  G  +H  L   F   +     F            Y  +N   +  ++YK  L 
Sbjct: 816 ---AATFGQAVHWALNKAFRNLKDNNDEFPLTQEFMDHYRWYMRRNRDSFTKEDYKLRLE 872

Query: 827 SITRLLEN--PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              R+L           + ++ +E ++    N   + I I G +D+I  + + + + +YK
Sbjct: 873 YGERILPVYYEQNIEVWNKNAITEKAIK---NVEIEGIPIKGNLDKIEFNGKQVNVVDYK 929

Query: 885 THHHV--------PQEIEHIPYTHIAQLSIYEKIL 911
           T            P   +     +  Q   Y+ ++
Sbjct: 930 TGKFKNARSKFDRPNGGDPNGGDYWRQAVFYKILI 964


>gi|94992155|ref|YP_600254.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
 gi|94545663|gb|ABF35710.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
          Length = 863

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 112/646 (17%), Positives = 210/646 (32%), Gaps = 72/646 (11%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
           R     +   EL+   +           +      +        K  + L    +     
Sbjct: 244 RLEDIPDHDIELLLLAMQDTANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWV 303

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTY 117
             F  L      +    +       +     D+          K    +  + R      
Sbjct: 304 RDFKCLYG----KAGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETIL 359

Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                 F             +  Y   K +    +F D+      +L++      IR   
Sbjct: 360 MYQKDCFPLLEQLQDFVLAFSEAYLAVKIQESAFEFSDITHFAIKILEEN---TDIRQSY 416

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            Q  + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+
Sbjct: 417 QQHYHEVMVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQAD 465

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
           P+   ++ R  QK+         +I L  +FRS +++L V + VFS   +      D   
Sbjct: 466 PQIFNQKFRDYQKKTEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLY 519

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             +H+        TV   ++         +  ++   +  DS     S   +   +A  I
Sbjct: 520 DEQHQLIAGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEI 574

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FIL 412
             +            + +  +DI +LV  R        +     N Y I +V +      
Sbjct: 575 IKLHND---------KGVPFEDITLLVSSRT----RNDIISHTFNQYGIPIVTDGGQQNY 621

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEY 469
              + +  ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+      + +Y+ 
Sbjct: 622 LKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDNELDKDCLYDK 681

Query: 470 IQK-----------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
           IQ+             +  + K    +K +      A+  S +D    I   +       
Sbjct: 682 IQRAVIGRGAHPELIHDTLLGKLNIFLKTLKSWRRYAKLGSLYDLIWKIFNDRFYFDFVA 741

Query: 519 SR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----LEQYPPTIKRAHSANHNEVR 573
           S+    +    L        + E++ Y  L   I      LE          +A    V 
Sbjct: 742 SQAKAEQAQANLYALALRANQFEKSGYKGLYCFIKMIDKVLETQNDLADVEVAAPKQAVN 801

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
           +MT+H +KGL+ P VF+++   +       K   +           
Sbjct: 802 LMTIHKSKGLQFPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYL 847


>gi|312132140|ref|YP_003999480.1| uvrd/rep helicase [Leadbetterella byssophila DSM 17132]
 gi|311908686|gb|ADQ19127.1| UvrD/REP helicase [Leadbetterella byssophila DSM 17132]
          Length = 1028

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 150/943 (15%), Positives = 301/943 (31%), Gaps = 167/943 (17%)

Query: 26   FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF--------LTQK 77
             Q++D  K V   ++ G+  + +    +            +SLL             +  
Sbjct: 219  KQITDYIKDVDNRIKKGSERLRQLLAKINSDHFVGKSRGIYSLLEDLSAKEIDLLKFSVN 278

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--RDRFNTYKMFKSTLASLTLAKYLNA 135
             T Q  + T    K+  +  E+LK    + + +   ++   +K     L  +     +  
Sbjct: 279  KTAQLALDTGNWEKQPSENIEELKAITYDILPLVLDEKLKLFKTINKELLKVPFINKIKG 338

Query: 136  HYEEAKKKNC---VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              +   K+     + DF D I     ++ +  V  +I  +I ++ NHI IDE QDTS  Q
Sbjct: 339  EIDNILKEKNQAILADFNDRI---AQIVSEEPV-PFIYERIGEKYNHIFIDEFQDTSTTQ 394

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV-----LREKRINQKR 247
            +  +  L E+       +        VGD KQ+IYS+ G     +        +      
Sbjct: 395  FLNLLPLIENSLAKGYQN------LIVGDPKQAIYSWRGGNVLLMVDLIQAEAQNNFSTA 448

Query: 248  ATNAGQKFS---------IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +  Q            + EL  + RS   ++   +++F    +           I H 
Sbjct: 449  NLSEHQSDQIKVVKKNTGVEELVTNRRSRGGLIHFNNELFQFIIDR------EIDPISHL 502

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                             S         +    +  +++  +        ++   + N+I 
Sbjct: 503  --------------VFSSVKQEVYEKNKIGGYTEVEAVDSD--------QVQEKLLNLIN 540

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
              T+            DI ++ RKR +  +   +     +   I +  +D  +L  +  +
Sbjct: 541  ELTLVEGSSDSKYSFSDICIITRKRDEGKICADIL----SQNNIPIRTDDALLLNSYYEV 596

Query: 419  KDLMALGRFILSQEDDLSFVCML--KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            + L+A  R  +  E        L   S LF+ +  D+  +                    
Sbjct: 597  RFLVAGLRLAMHPERTFEKFEFLQFYSFLFDATGFDLKALSRA----------------- 639

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
              S++    K     +       P+     ++   K  +      G     VL  FL+F 
Sbjct: 640  HYSEYLAFFKAKGIDLEGFSSLDPYQMTEFLIARFKLLE-----LGKNTQFVL-AFLDFV 693

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            L        +L +L+ E E     +    S   + V I T+H +KGLE  VV +      
Sbjct: 694  LNFTNKVSKNLFDLLKEWENKKVNLAL-TSPPSDAVTITTIHKSKGLEYEVVIVPFINWS 752

Query: 597  VFSHKHIKKMHIMPS----LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            V      K    +P      +++  +  +      +     + I + K+ T+ E   LLY
Sbjct: 753  VGPTGKEKLWIKLPDYPEFYSEEKRLETFPLSPGVKYEFAQETISYYKQMTKIENLNLLY 812

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V +TRA  +  +                   +V  +         ++     +K+ +   
Sbjct: 813  VALTRAKQRQYL------------------WLVPKNKKYGIGEYLLQFIGKADKNCFGEK 854

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
               +        E+ E       ++K+        +                        
Sbjct: 855  AHISSKKVEIKSEKAEFPPAFGTDKKLNVIWRPDTQE----------------------- 891

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                      G + H  +Q I    E      + +   K       ++ ++L   I +++
Sbjct: 892  -------LEIGNLFHDAMQRIQFAEE------VDAILDKMLIEGQIEDKESLKSDIDKVV 938

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
             +P +    S  S +++    +I           R D++   +  ++I +YKT       
Sbjct: 939  NHPKLKDLYS--SRAQIKNETEILSSTTQAR---RPDRVVFFEDKVYILDYKTGKKSKY- 992

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                   H  QL  Y  +L+    + S+V  LIY+   +V  +
Sbjct: 993  -------HAKQLKDYASLLRQM-GHHSIVLYLIYLHPFEVVEV 1027


>gi|326771896|ref|ZP_08231181.1| UvrD/REP helicase [Actinomyces viscosus C505]
 gi|326638029|gb|EGE38930.1| UvrD/REP helicase [Actinomyces viscosus C505]
          Length = 1142

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 141/1042 (13%), Positives = 265/1042 (25%), Gaps = 212/1042 (20%)

Query: 44   PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
                +   +L +A       E  S  +S  L    +  +N++T  I + + DL + L + 
Sbjct: 155  ARSWQIVTSLLEARTLPLPNESLSHNASATLVLADSLSQNLLT--IEEAAKDLAD-LSEQ 211

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                  I+          + +A       + A     K+ + +LDF D I     + +  
Sbjct: 212  FTALAAIKGCKTLVGKAPAVMAEWEALLDVVAELHAHKRHHGLLDFGDQIALACAIAESV 271

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              +A    ++  +   +L+DE QDTS+ Q  ++ +L  D             + AVGD  
Sbjct: 272  PEAAG---QVRAQYPAVLLDEFQDTSVAQVRLLSALFADSG-----------VTAVGDPH 317

Query: 224  QSIYSFHGAEPKRVLREKRINQ-------KRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            Q+IY + GA    +    +             T+  +   ++EL  S+R+ + IL V + 
Sbjct: 318  QAIYGWRGASAAALDTFHQRFNPTGTALLDSGTSPVEATPVLELSTSWRNDSTILDVAN- 376

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
             F       G+ ED      H          + +             P         D  
Sbjct: 377  -FVSAPLRSGVVEDGDPVGEH----------LTVAPLRARPAAFGLEPGAAFGAFLQDPA 425

Query: 337  PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
             +       AR +   ++              R   + ++ VL R R     I       
Sbjct: 426  EE-------ARTVVAFLAE-------------RWSPSAEMAVLCRTRAQMDPIAAELEA- 464

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 +         +     + D+ AL       E     V +L    F     D+  +
Sbjct: 465  ---AGLPYTIIGLGGMLYVPEVADVRALLTAASDPERGDRVVRLLTG--FGIGARDLRAL 519

Query: 457  --------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH--------------- 493
                           +         A          +  +                    
Sbjct: 520  ASLARELTRPATESGKEAPGTHGDHAEADSPLLSEALDTLLRWHEDGVQEEQEESAAARD 579

Query: 494  --------------------IAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEF 532
                                 A      D   L         +  +R G+ +    LD F
Sbjct: 580  LTEAGRAVALRTARAIRRIREAVSLPLPDLVALAEQVLDLDIEIAARVGHTMGHRALDTF 639

Query: 533  LNFTLRNEQ-NSYSSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPV 587
                          +L   +  L+                +   V+++TVH AKGLE  V
Sbjct: 640  HETARAFAADTDAPTLTGFLEWLDAAEEHEDAMSAPEVEPSPGAVQLLTVHAAKGLEWDV 699

Query: 588  VFLVDTGSQVFSH----------------KHIKKMHIMPSLNDDPGIPIWI--------P 623
            V +     QVF                           P   D   +P +          
Sbjct: 700  VAVPGMDEQVFPSYTSAVKDDLRVAETGWMGSTSTFPFPLRADAGDLPPFTVGDLDPAVT 759

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY- 682
                    +S   + L + +  E  RL YV  TRA  +L++     +    K  + + + 
Sbjct: 760  DKPLLTETMSAYKEALGRQSLREERRLAYVAFTRARHELLLTGSHLSKTASKPRRPSRFL 819

Query: 683  ------DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                  D++           + +        +   +       E    +  E   +    
Sbjct: 820  TELQRRDLLSPYAEGWVDFDESRPNPLTALTQVGTWPPDADAAEPMDNQAPEAEIEGTAV 879

Query: 737  QKIPKKLFSPIKNDI---------NEPYILNPSTIDTKGKTNLESLL-------SDNQTF 780
                  +                   P    P+      +      L          +  
Sbjct: 880  TDRLADVRRARYAAAAQVTAAMGGAAPAQEVPAQAQPDDEMVRRWRLEAGLLLAERTRAL 939

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK------------------ 822
            + G  + +L + +        +     +     +  P +                     
Sbjct: 940  SDGPAV-RLPEHLAATRLDDLRADRHRFALDLRRPLPPEPRAAGRLGTVFHDAVAQRLSA 998

Query: 823  ------------------NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                                   I R LE       +     +E               +
Sbjct: 999  RGTLFGLGQAGVPDSLGPQDRDRIERWLETAENLPLLEDYVLAE--TETDREITVGATTL 1056

Query: 865  SGRIDQISI--SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK--DSYPNKSL 920
              R+D +          I ++KT               + QLS+Y          P  ++
Sbjct: 1057 RCRMDAVFQRLDGSGWLIVDWKTGR---------RQVPVDQLSVYVHAWAASQGVPTGAV 1107

Query: 921  VCLLIYVS--EPKVFIIPQNKL 940
                +YV   E +V  +    L
Sbjct: 1108 RAAYVYVDYPEGRVDELSAEGL 1129


>gi|146329276|ref|YP_001209300.1| DNA helicase UvrD [Dichelobacter nodosus VCS1703A]
 gi|146232746|gb|ABQ13724.1| DNA helicase UvrD [Dichelobacter nodosus VCS1703A]
          Length = 664

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 105/596 (17%), Positives = 186/596 (31%), Gaps = 117/596 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y E  +    +DF+DL++    LLK     A +R    ++I ++ +DE QDT+
Sbjct: 163 AAKIYCAYCERLQAYNAVDFDDLLLLPTRLLKTD---AAVRGFWQEKIRYLFVDEYQDTN 219

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +++ +            +   L AVGD+ QSIY++ GA+ K +   +    +   
Sbjct: 220 NCQYALMQLIVG----------AGGALTAVGDDDQSIYAWRGAQVKNLQYLQEDYPQ--- 266

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  II+L  ++R    IL   + + +   +                          
Sbjct: 267 -----LHIIKLEQNYRCHHKILQAANTLIAHNPHLVEKR--------------------- 300

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW Q+           +                   A RIA  I              + 
Sbjct: 301 LWSQLERGDGVCVFAARND--------------EAEAERIASAIYQ---------QKLRT 337

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               ++  VL R       I    R    D  I    +      +H  I+DL+A  R I 
Sbjct: 338 QAAWQNFAVLYRSNFQARAIEQALR----DVSIPYQISGGTSFYEHSEIRDLLAYLRLIN 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQ 482
           + EDD +F+ +   P        +  +          ++    +       +       Q
Sbjct: 394 NPEDDAAFLRICNVPKREIGTKTLTVLGEYAAKRQCCLFYAATELGLATLLSARAAMSVQ 453

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLN-FTL 537
              ++I E    A+   P      ++     R+   +        +    ++E +     
Sbjct: 454 QFCQWIEEKQKEAETALPSALLQTVIDEVAYREYIEANEAPAKAEKRWARVEELIAWLVR 513

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E+  Y SL  L+  +        +      + V++MT+H AKGLE P V++      +
Sbjct: 514 LEEEERYQSLAGLMRHVLLLDILEHQDKQ--KDGVQLMTLHAAKGLEFPYVYIAGVEEDL 571

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H H                                      +    E  RLLYVGMTR
Sbjct: 572 LPHHHCG----------------------------------ESEEAIAEERRLLYVGMTR 597

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           A  QL +       + K     T    + +        +  +             E
Sbjct: 598 AKFQLTLSYAKQRRHGKNWEASTASRFLQELPEEGIDWQDGRRAIDEQALNEKREE 653


>gi|139438971|ref|ZP_01772431.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC
            25986]
 gi|133775682|gb|EBA39502.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC
            25986]
          Length = 1210

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 143/1054 (13%), Positives = 284/1054 (26%), Gaps = 193/1054 (18%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC----- 61
                 + + + ++L  L       ++       +     +    +    AS+        
Sbjct: 169  FGAGTTIKGLVRELLELSSQLPGGMDDVHVARGQADTSALADAYRAALGASKAATEKAQV 228

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
              +      +   T     +  +            KE+++  + E               
Sbjct: 229  ALDAIDAFEASGKTMADAARLMMSCTMPRASKAFPKEQVELLKAEAADAFINIVLACGGP 288

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            +  A + LA+ + A Y   K     LD  DL+    + L+       IR   +     ++
Sbjct: 289  ALDALVGLARSVEAEYRALKAGQSALDNNDLLRMAYEALRDYPA---IRAAYEGRFKMVM 345

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT  +Q ++IR LT          +  R L  VGD +QSIY F GAE +   R++
Sbjct: 346  IDEFQDTDQMQVDLIRYLTG---------AGERALCTVGDAQQSIYRFRGAEVEVFRRQE 396

Query: 242  RINQKRATN------AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            R     A              +++L  +FRS  ++L  V +VF   +             
Sbjct: 397  RKVGSSAAPEATAVTDAPAGELVKLVRNFRSHDEVLRYVARVFDGDDG------------ 444

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                   G +      E    + D+           +      +      AR IA     
Sbjct: 445  -------GLMQGFLDLEASDGRKDTLVADASRRQALFVAGGSTQERTQAKARAIAERFRA 497

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            +                   +++L+ +  +  +     R    D  +  V     +    
Sbjct: 498  LADAGQPQ----------GGMVLLLGRMTNADVYAQAFR----DQGLDCVIAGGSVFAQA 543

Query: 416  LAIKDLMALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKI----------CTQRHETE 464
              ++ + AL   + +  D     + +L SP+F     +   +           ++R+   
Sbjct: 544  AEVQTVRALVCALANPADTAQGLMPLLASPMFALGAQEFLALATKLDEQTGETSRRNIDA 603

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FG 522
             +          G+       + +   +      S       ++ A     +   R   G
Sbjct: 604  GIMSDFDVPGLQGLPLVTRAREVLRYALRRVGRDSFAAIARDVVNASGWFVRLAQRGPEG 663

Query: 523  NEVIDVLDEFLNFTLRNEQN---SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
              +   + + L+     E     S  S+                 +      VRIMTVH 
Sbjct: 664  KAIAANVLKALDAVAEAEAEFGNSPRSIALAFDRFLAGKEAPGALNEEGDGAVRIMTVHA 723

Query: 580  AKGLESPVVFLVDT---------------------------------GSQVFSHKHIKKM 606
            +KGLE PVV + +                                      F      K 
Sbjct: 724  SKGLEYPVVAVAECFGVRKSSGAAQMGRVEGGAQVVALPARFDGIKLADGTFVKGDDVKK 783

Query: 607  HIMPSLNDDPGIPIWIPQSKSR-------NNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                +           P+               + L     + + EE  RLLYV MTRA 
Sbjct: 784  QFEHAFKGKGTSLWLPPELMEDVCATGSPAEAFARLRNDDLQLSLEERARLLYVAMTRAR 843

Query: 660  DQLIICKHSNTSNEKKSNQ-----------------------------------RTWYDM 684
            + +I+   +  S  K +                                      +    
Sbjct: 844  ELVILAMDAGVSRGKVTAPTFDVETDLTYDVLRRILPTDALDMPQLDSDRLTFDNSKPGD 903

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                   D    +     + + D           PE    +    +    D +    +L 
Sbjct: 904  YELISLADFTFGEQAFEANASLDAEGRLVRGDAEPEGAGADARAAVPGPADPEPDAFELV 963

Query: 745  SPIK----------------NDINEPYILNPSTIDTKGKTNLESLLSDNQT--------- 779
             P                  +  +    L+    D   +  +    + +           
Sbjct: 964  YPQAVGVRMGICPYPARDSYSYSSIAAALHTEAEDRAAEARVPMDEAGDDAESDGSETAD 1023

Query: 780  ------------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                           G   H   Q +  +              +       ++ +   ++
Sbjct: 1024 ADVAAVEPAGNPMALGSAFHAACQWLIEMGADALPAARADALARQ-WRLTPEQRERFDVA 1082

Query: 828  ITRLLENPMMTTAMS-CDSYSEVSVS----GKINCPKKDIIISGRIDQISI---SQQNIF 879
            + R L++ +    ++     +EV          +  +      G ID ++          
Sbjct: 1083 LDRWLKSAVRADLLAWPCVRAEVPFFSLGCEDEDIARYGAYAEGAIDALATNPADPSRAL 1142

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            + +YKT     +  E +   H+ Q  +Y  +L  
Sbjct: 1143 VIDYKTGGTPDETPEQLQEKHVLQARVYADVLHK 1176


>gi|326791279|ref|YP_004309100.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326542043|gb|ADZ83902.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 681

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 99/549 (18%), Positives = 173/549 (31%), Gaps = 120/549 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L  HYE  K+++   DF+D+++    LL   D    I   +  +  +ILIDE QD + +Q
Sbjct: 161 LLKHYEAFKERHQAFDFDDMLVACYYLLDNDDA---ILKVVRAQYQYILIDEFQDINEVQ 217

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +I+ + E          + R +F VGD+ QSIY F GA+P+ +L  K+   +      
Sbjct: 218 FRIIKKIAE----------AKRQIFVVGDDDQSIYQFRGAKPEFLLDFKKHFPE------ 261

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L +++RST  IL     +          +           +     G+  L+ 
Sbjct: 262 --VEEIYLDVNYRSTQMILNYSLALIEHNTKRYLKAL----------TTPNAKGSAPLFI 309

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                 +                          A  I   I                 + 
Sbjct: 310 PCKDAKE-------------------------EALLIVNEIIKRKNEG----------LP 334

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQ 431
             ++ ++ R       I            I     D    L D    +DL A      + 
Sbjct: 335 LTEMAIIYRTNLQARPIVETLLA----ANIPFCLRDGMVSLYDQWITQDLFAYLYLAENI 390

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
                   ++  P    S      +   +     ++  +       ++++Q    YI +L
Sbjct: 391 NQPELAARIINKPKRYISN---AVMQQAKQMGGHLF--MNLLGLETLTEWQK--NYIQQL 443

Query: 492 IHIAQFCSPHDFFTLI--LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--SYSSL 547
           +   Q     D    I  +    G  Q++  + +         L      E +   Y S 
Sbjct: 444 LFDLQVLKEKDLKNAIAYIRRNIGYDQYVMDYASFRKMPASSLLEVLDDIEDSTEGYVSF 503

Query: 548 QELISELEQYPPTIKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +E  + L+     +K   +        + +MT+H +KGLE   VF++   +    H    
Sbjct: 504 KEWENMLKTMSEEVKTQTNHKNIKQEALNLMTMHGSKGLEFNTVFIIGVVNGTIPHH--- 560

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                           K    +  EE  RL YV MTRA + L I
Sbjct: 561 --------------------------------KSHLPAELEEERRLFYVAMTRAKENLFI 588

Query: 665 CKHSNTSNE 673
                   +
Sbjct: 589 YSPEERHGK 597


>gi|296113149|ref|YP_003627087.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis RH4]
 gi|295920843|gb|ADG61194.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis RH4]
          Length = 1315

 Score =  223 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 150/1017 (14%), Positives = 302/1017 (29%), Gaps = 158/1017 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +    +            K+    +IN+      + L    + ++ + ++ N Y   
Sbjct: 328  DALKLIDAIIKAMDKDWQIFNKSANPSDINQFLALPIQALSDIANVYLTLSEQTNLYHTH 387

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                  L+    +    E     +    F   ++  N+ L+       +  +I       
Sbjct: 388  ICRHIILSAKSQIAQRLET----HGQTTFTLQMVRLNEALRNSPA---LARQIRHHYPVA 440

Query: 181  LIDEVQDTSLIQWEVIRS-------------LTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            LIDE QD + +Q E+I               +  +   G+        L  VGD KQ+IY
Sbjct: 441  LIDESQDINGLQVELIELVYLNEIANYHKNLIRYEQIGGEKPKLPRGFLLLVGDPKQAIY 500

Query: 228  SFHGAEPKRVLREKRI-NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQ 285
             F G +       K   NQ     A      + L ++ RS+  ++  ++  F    ++A 
Sbjct: 501  RFRGGDVTNYNLIKHYGNQDLLIKAPLMNQSLSLTVNRRSSKALIEALNAWFDNNHQDAV 560

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                +    I ++  +  + G    W+           P       +FD +     A+  
Sbjct: 561  ANHANLGQGIFYQQIQAHKDGGGIHWQSDAYADYYGKYPIAV---LHFDHIEAGQKAAQR 617

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +IA  I+ ++  D        + I  KDI VL R       I      L     I  +
Sbjct: 618  AEQIARHINTILQGDHTLHG---QKILPKDIAVLGRTADTLDRIKSELDQL----NIPAI 670

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                  +    A  DL+AL   I       +    L S L   +      I     +   
Sbjct: 671  IPKEMNIFITQAADDLLALIGAIHQPNHSENLGKFLVSSLVGMTLKQAINIIEPNDQ--- 727

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-------I 518
              + +    +   +   H++ Y+ +     Q           L                 
Sbjct: 728  --QALDNDLSETQNLKTHLLAYLKKSYEKWQKFGVSSALAYALHHSPIDYDDDKSPWLKA 785

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMT 576
            +  G   +  L+  +       Q     +     +                + + V +MT
Sbjct: 786  ATQGERYLVDLERLVALVSEQSQLHEMRIIAWYHKQMNADVDSHNKRPILPSESGVNLMT 845

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P+V+++    +  +      + I P  N +    + + Q    +       
Sbjct: 846  IHKSKGLEFPIVYVIGMDEKPKNEN---GLTIYPYTNHNFQRCLSLSQGNLIDENY--YY 900

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN----D 692
               ++   +E  RL YV +TRAS+QL I       ++K S +   Y  +  +        
Sbjct: 901  HINQQELIDEIRRLGYVALTRASEQLYIVG--GDLSKKTSKEMPLYQWLDCAGEKILSLP 958

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +R+K       + + +  +  + T  P+ +          +   Q   +   S       
Sbjct: 959  DRLKGWVDWIDLTEADLFSQPYQTKLPDLSTKNYAPWDMVMTKTQFFGEYKTSFSALITR 1018

Query: 753  EPY-ILNPSTIDTKGKTNLESLLSDN----------QTFNRGLIIHKLLQVIFT------ 795
                 ++P   D    + L  + + +          +    G  +HK++Q + T      
Sbjct: 1019 LDKSAISPDEADIDQLSVLTDMAASDQFDDIRTSFFKGSLAGDFLHKVMQFLPTDRLALA 1078

Query: 796  -------------LPEHKRKNFITSYC-TKNAKLWP---------AKEYKNLLLSITRLL 832
                           + ++      Y  T+ A+            A ++  L+  I +L 
Sbjct: 1079 SLHDAHRIISGVIYEQGRKLGIAERYLPTRPAQQIGTRINSNEHQADDHTKLVAWIYQLA 1138

Query: 833  ENP---------------------------------MMTTAMSCDSYSEVSVSGKINCPK 859
              P                                  +       S  ++ +        
Sbjct: 1139 YAPFRASHRSLMSLPMTVQLHELSFTLGLGNTFSITRLNEVFKAHSDKDLVLLDDDYHTM 1198

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKI 910
            +   + G ID +    +  FI +YK+++      E+             +  Q +IY+  
Sbjct: 1199 RYRYLRGEIDLVYECDRRFFIVDYKSNYLGSTPDEYHDHAMAAVMDKVGYWLQAAIYQVA 1258

Query: 911  LKDSYPNK------SLVCLL-----IYVS--------EPKVFIIPQNKLNKAFAEIS 948
            L      +      +    L     +++            +   P   L  A  EI 
Sbjct: 1259 LHRLLKIRLKDYVGNEAAYLGAVEYVFLRGVQEGNEKTGHLCWQPPLSLILALDEIL 1315


>gi|153006283|ref|YP_001380608.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152029856|gb|ABS27624.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 682

 Score =  223 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 105/591 (17%), Positives = 192/591 (32%), Gaps = 119/591 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +A  +   YE+A +    +DF+DLI    +LL +    A +R ++ +   ++L+DE QDT
Sbjct: 176 VASEVYPRYEQALRAQRSVDFDDLIAKPVELLARD---AEVRRRLQRRFRYLLVDEYQDT 232

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           ++ Q E+++ L  +           R + AVGD+ Q+IY + GAE + +LR +R      
Sbjct: 233 NVAQLELLKHLAGE----------RRNVCAVGDDDQAIYGWRGAEVRNILRFERHFP--- 279

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I L  ++RST  IL   + V +     +            R       G  
Sbjct: 280 -----GAREIRLEQNYRSTGRILDCANAVIAKNAERK----------PKRLFTAAGPGEP 324

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                +  + D                          AR +A  +S +            
Sbjct: 325 VRVLALAQEED-------------------------EARFVAEELSRLRQEGRP------ 353

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                    +L R    +  I    R       +  V +      D   ++DL+A  +  
Sbjct: 354 ----WSHFAILFRLNAQSRPIEEALRE----ASMPYVMHGGPAFFDRAEVRDLLAYLKVC 405

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGISKF 481
           +S  D++S   ++  P     +  + ++          +++       I +       + 
Sbjct: 406 VSPHDEVSLARIVNVPARGIGDASLERVHAWAVARGVHLFDALGRAAEIPELPKGAPERM 465

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFT 536
              +  I             +    ++          +       G   +D LD  L   
Sbjct: 466 AAFVALIERYRARFGEGRVAEAARALVAEVDLYGHARASVQSFEAGQRKVDALDGILRSL 525

Query: 537 LRNEQNS-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
              EQ +   S+   +  L     +      A  + + +MT+H AKGLE PVVFLV    
Sbjct: 526 EGYEQRTARPSIATWLQRLALDSRSE--EDPAKDDGITLMTLHAAKGLEFPVVFLVGVEE 583

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +                                          +    +E  RL YVG+
Sbjct: 584 DLLP----------------------------------CAGIQGEARDLDEERRLAYVGI 609

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           TRA ++L + + +  +   K   RT    + D   +          +S   
Sbjct: 610 TRARERLYLTRAATRTKRGKLLPRTPSRFLGDLPPDAHEQVDPDALSSSPA 660


>gi|240112479|ref|ZP_04726969.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae MS11]
 gi|268598547|ref|ZP_06132714.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae MS11]
 gi|268582678|gb|EEZ47354.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae MS11]
          Length = 1200

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 129/936 (13%), Positives = 266/936 (28%), Gaps = 160/936 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L +YLN+   E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +      + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +    +           +      +     
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKA 529

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKR 383
             ++                  A   A  I+  +   +    N K R +Q+ DI VLVR  
Sbjct: 530  NKDVL------------RRRAADYCADEIARALNEASGGRLNFKGRPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +I+   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMISAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                       + I Q       
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDIWQKYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +     K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +     +++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRTYACEKDGITMLKRNWRRVADNAPAGTDFAFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  GNADQAAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+         +++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +   ++ D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY----- 898
             EV  + +  ++    +  ++G ID +       I I +YK++H      + +       
Sbjct: 1083 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQ 1142

Query: 899  THIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             +  Q  IY       +  +     ++    +++  
Sbjct: 1143 HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|239998560|ref|ZP_04718484.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae 35/02]
 gi|240013685|ref|ZP_04720598.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI18]
 gi|240120754|ref|ZP_04733716.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID24-1]
 gi|268594420|ref|ZP_06128587.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 35/02]
 gi|268547809|gb|EEZ43227.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 35/02]
 gi|317163836|gb|ADV07377.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 1200

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 129/936 (13%), Positives = 266/936 (28%), Gaps = 160/936 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L +YLN+   E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +      + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +    +           +      +     
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKA 529

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKR 383
             ++                  A   A  I+  +   +    N K R +Q+ DI VLVR  
Sbjct: 530  NKDVL------------RRRAADYCADEIARALNEASGGRLNFKGRPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +I+   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMISAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                       + I Q       
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDIWQKYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +     K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +     +++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRTYACEKDGITMLKRNWRRVADNAPAGTDFAFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  GNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+         +++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +   ++ D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY----- 898
             EV  + +  ++    +  ++G ID +       I I +YK++H      + +       
Sbjct: 1083 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQ 1142

Query: 899  THIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             +  Q  IY       +  +     ++    +++  
Sbjct: 1143 HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|309378186|emb|CBX23178.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1204

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 135/980 (13%), Positives = 284/980 (28%), Gaps = 163/980 (16%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
            +  +    L+Q +    +    + L    L      +     ++       +  +L+K  
Sbjct: 271  SFAELFDALEQKALLTDLPFLEAKLHERLLKLSSD-KLEAGLKKGKTPDAAVFAELQKLA 329

Query: 105  DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
            D    + D     +        L L  YLN    E KK      F+DL+++ +  L    
Sbjct: 330  DFGRDL-DALEEAEEATMIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNP 388

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             +  +   + +     LIDE QDT  +Q+E+ + +           +  R LF VGD KQ
Sbjct: 389  HAEILARAVAENWETALIDEFQDTDPLQYEIFQKIF---------IAQNRPLFLVGDPKQ 439

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            +IYSF GA+    L+           AG       L  ++RS + ++  +  +F + E  
Sbjct: 440  AIYSFRGADIYAYLQ----------AAGDAQHRYTLATNYRSHSALIGSIGALFRLKERP 489

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL--PQESSA 342
              L     + +   ++R              S+   +    Q  W    D+    ++   
Sbjct: 490  FVLENIGYSEV--GAARAE------------SRLSPERPAVQVRWLHENDNEKTNKDVLR 535

Query: 343  SILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               A   A  I+  +        N K   +Q+ DI VLVR   +  +++   +      +
Sbjct: 536  RRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVRTHNEAVMVSAALK----KRQ 591

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            +  V   R  +        L AL  F L      +   +L S +F +    +        
Sbjct: 592  VQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDAQQLHDFNQNES 651

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E     E                   +                           + +SR 
Sbjct: 652  EILHWAE--------------SARTALDNW----NKYGIFAAMQQFSQTHGIETRLLSRN 693

Query: 522  GNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRI 574
                +    + L        +  + ++L + + +                  ++ + V+I
Sbjct: 694  NGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIRLESDEDLVKI 753

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            +T+H +KGL+ P+V+         +     ++    +   +               +  D
Sbjct: 754  VTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ---------LSED 804

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY-------- 686
              K        E+ RLLYV +TRA +QL I    ++             +          
Sbjct: 805  EQKQYADEEMAEHLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRR 864

Query: 687  -DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP----- 740
              +   D      +    +  +      ++       P        Q  +          
Sbjct: 865  AYACEKDGIAMLKRNWRRVADNAPSGTNFAFTEDAPPPAAYRGNAGQTAEFAASDIPKRG 924

Query: 741  ---------KKLFSPIKNDINEPYILNPS-----------TIDTKGKTNLESLLSDNQTF 780
                       L    +   +    + PS             +T   ++  S+    +  
Sbjct: 925  FRFIRHTSFTALSRQTQTPDDGEEEVQPSLDPAETAESTMPSETPTASDGISIHDFPKGT 984

Query: 781  NRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---- 835
              GL +H++L+          ++  I     K    +       +        + P    
Sbjct: 985  QAGLCLHEILEDFKFGQAAAGQETLIADKLKKYG--FEEIWLPAVAEMAEACRKTPLTGA 1042

Query: 836  ---------------------------MMTTAMSCDS--YSEV--SVSGKINCPKKDIII 864
                                        +    + D     EV  + +  ++    +  +
Sbjct: 1043 YCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFL 1102

Query: 865  SGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDS 914
            +G +D +       I + +YK++H             +     + +  Q  IY       
Sbjct: 1103 NGFVDMVCQDPDGNICVIDYKSNHLGTDASAYTRQAMDEAVAHHHYYLQALIYAVAAARY 1162

Query: 915  YPNK-----SLVCLLIYVSE 929
            +  +     ++    +++  
Sbjct: 1163 FKLRGQPPAAVSVRYLFLRG 1182


>gi|294788471|ref|ZP_06753714.1| exodeoxyribonuclease V, beta subunit [Simonsiella muelleri ATCC
            29453]
 gi|294483902|gb|EFG31586.1| exodeoxyribonuclease V, beta subunit [Simonsiella muelleri ATCC
            29453]
          Length = 1206

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 137/925 (14%), Positives = 280/925 (30%), Gaps = 161/925 (17%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL---NAHY-E 138
            + I ++I K+ PD  E   ++  +  ++ D  +     +       L+         Y +
Sbjct: 305  DFIDEKIKKQRPD--ENKMRNVAKLGELADLTDYLIAAEQN-VLHQLSCDFTNYLRQYRQ 361

Query: 139  EAKKKNCVLDFEDLIINTN-DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            E KK +    F+DL+++ +  LL   + S  +   + Q  +  LIDE QDT  +Q+ + R
Sbjct: 362  EQKKHSPQRIFDDLLLDVHHALLNNPEYSQSLVDSLAQNWHVALIDEFQDTDPLQYAIFR 421

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                          +   LF VGD KQ+IY F GA+    L+  +               
Sbjct: 422  ---------TAFAQTNTPLFLVGDPKQAIYGFRGADIFSYLQAVKD----------SEYH 462

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
              L  + RS   ++  +  +F   +         T    HR                 S 
Sbjct: 463  YTLNTNHRSHKKLMDSISSLFQREQAFALPEITYTPIQAHR---------------QQSD 507

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDI 376
                 +  Q  W S  D   Q+      A   A  I++++      S       + A  I
Sbjct: 508  LSDNLSSVQIRWLSNHDGENQDKLVKQSAAICAQQIADLLAQSAQGSLKINDENVHAGQI 567

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             +LVR  KD  +     + L     I  V   +  +      + + AL  F++  +    
Sbjct: 568  AILVRAHKDGAVAQRELKRL----GIQSVLLSKANIFAEPEAQAVAALLEFVIQPQKLGL 623

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
               +L S LF +   D+  +    ++  T  +                 + +        
Sbjct: 624  LRFVLSSCLFKYDSADLQDLNIDENKLLTWID--------------SANQTLEVW----H 665

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                +          +     +++     +  L + +    + E     +   L   L Q
Sbjct: 666  QFGIYSALQQFFTRHQVETHLLAQKNERSLTNLHQIMELLAQ-EDELSHTPTSLHQWLNQ 724

Query: 557  Y-----------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
                                 ++ N V+I+T+H AKGLE P+VF      +       + 
Sbjct: 725  EIQAALKNNSITAEHQVLRLESDENLVKIVTMHAAKGLEYPIVFCPFAWKKSNDSSRQQW 784

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                 +             SK++          +++    E  RLLYV +TRA ++L + 
Sbjct: 785  YISHETGEA-------QIISKNQYKQSDADKLSIQQENLSEDLRLLYVALTRARERLYVY 837

Query: 666  ------------------------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                                     +   +++  +   T Y+  + +F            
Sbjct: 838  VSHFQSSEQPKKSAENEGQFINALAYLLNADKNLTQDATAYENHWRNFIAQNNQNGADFE 897

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS- 760
              ++ D   +         + P  + ++ +    +        S  +       +L P+ 
Sbjct: 898  FIVHHDTHHSSNLKKQQNADLPNYQAKSFQNRHFQFIQHASFTSLSRQTQRATELLLPAL 957

Query: 761  -------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYC--T 810
                   T       + +S+ +  Q    G+ +H +L+ +    P  K+ ++I       
Sbjct: 958  DSDELQMTALPTTPPDGDSIHAFPQGAAAGMCLHTILERLDFRQPAVKQIDWINKKLNEA 1017

Query: 811  KNAKLWPAKEYKNLLLSITRL----------------------------LENPMMTTAMS 842
            +            +                                        +    +
Sbjct: 1018 RFDANIWRDAVVQMCDFARETPLLARVNLASLNPRNYLSEMTFLIHTTHFRLADIQAWFA 1077

Query: 843  CD--SYSEVSVSGK--INCPKKDIIISGRIDQISISQQ-NIFIFEYKTHHHVPQEIEHIP 897
                   E  +     +N       ++G +D ++ +   NI I +YK+++       + P
Sbjct: 1078 AQKNKLPERIIQAAQQLNFYDVRGFLNGAVDLVAQTPDNNILIIDYKSNYLGNSAAAYTP 1137

Query: 898  ---------YTHIAQLSIYEKILKD 913
                     + +  Q  IY   +  
Sbjct: 1138 HAINDAMAEHHYYFQAFIYAIAVAR 1162


>gi|228990313|ref|ZP_04150279.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus pseudomycoides DSM
           12442]
 gi|228769389|gb|EEM17986.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus pseudomycoides DSM
           12442]
          Length = 687

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/658 (15%), Positives = 206/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVANLPGMNHAASRYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  ++        + +   YE+ K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKNVQAKTPVEQEFREVYERYEDVKQRYGYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++    ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETFYMLENN---APLLTQLQNRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFD--------DTTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFKKELYSVHEEGIQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I + + +            + KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQDKVASGER---------EYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R         S   +L +    
Sbjct: 400 ---SLLDQLTIHKVPFIKHGASQSFYEHSLIKPVLDQLRLAYEPFRIESLSSILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + +   I + I   +   P   
Sbjct: 457 RDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKINDRI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
              I+  K    +++         +   + E +   L      ++ +   +  +     +
Sbjct: 516 LKEIIKGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLEFISAAIQS 575

Query: 561 IKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
            K   +       + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMQQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHSSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RL+YV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTDTSEALEEERRLMYVAITRAKEELYISSPQFFRGKK 667


>gi|124514841|gb|EAY56353.1| putative UvrD/REP helicase [Leptospirillum rubarum]
          Length = 649

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 110/627 (17%), Positives = 205/627 (32%), Gaps = 130/627 (20%)

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E++  LL S         +K +           +   +  S++  + + D    Y  F
Sbjct: 113 DREDQVDLLKSILSAFPEGLRKELPPAG------QILNAISLSRNSMVSLED--VIYDRF 164

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              +  +     +   YEE K+K+ + DF+DL+    D+L   +    +   + +    +
Sbjct: 165 SGLIPVIETVTRIRTEYEEVKRKDRLADFDDLLTGWLDIL---ESGPDVLELLQERFRFL 221

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++  L              ++ F VGD+ QSIYSF GA  + +L  
Sbjct: 222 LVDEYQDTNPLQSTILDKLAA----------RHKSFFVVGDDSQSIYSFRGAHVENILTF 271

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                        +  I  L  ++RS+  IL + +++    E     +            
Sbjct: 272 PDRYP--------EARIYRLETNYRSSPPILDLANRIILGNERRIEKTLRPFH------- 316

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                             +    P+     S  D           A  I  T+  ++   
Sbjct: 317 -----------------TEEGEAPRTVGLYSDADQ----------AHFIGSTVDQLLDGG 349

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
           T          QA +I +L R       ++   +F     KI           +   IKD
Sbjct: 350 T----------QASEIAILYRSH----YLSLPIQFELARRKIPFSITSGLRFYEQAHIKD 395

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK------FA 474
           ++A  R +L+  D L+   +L+       E    K+     E E V+  +          
Sbjct: 396 VLAHLRLLLNPRDTLAMTRLLRMIPR-MGERSSEKLIRVLGEVEDVFSGLTDEKVLKTAP 454

Query: 475 NCGISKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQF--ISRFGNEVIDVLD 530
           +      + + + +  L  +   +  +       IL     R+    I     E    L 
Sbjct: 455 SLSREGVRKLGERLFSLRELQRKEESTVGLLVMEILEE-GYRRDLYDIREDPEEREADLV 513

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            F              L+  + E+        +  ++++  + V + ++H AKGLE   V
Sbjct: 514 AFAEQL-----GEQKDLEGFLGEITLLENLEEMALSNASVPDRVILSSIHQAKGLEWDTV 568

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F++     VF  +                                     L+    EE  
Sbjct: 569 FVLSMNEGVFPPE----------------------------------KSALRPQDLEEER 594

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKK 675
           RL YV +TRA   L++C   +  +  +
Sbjct: 595 RLFYVAVTRARRDLLLCVPESAISRGR 621


>gi|1388172|gb|AAB02825.1| ORFA; putative Rep helicase-like protein [Dichelobacter nodosus]
          Length = 685

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 105/596 (17%), Positives = 185/596 (31%), Gaps = 117/596 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   Y E  +    +DF+DL++    LLK     A +R    ++I ++ +DE QDT+
Sbjct: 184 AAKIYCAYCERLQAYNAVDFDDLLLLPTRLLKTD---AAVRGFWQEKIRYLFVDEYQDTN 240

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ +++ +            +   L AVGD+ QSIY+  GA+ K +   +    +   
Sbjct: 241 NCQYALMQLIVG----------AGGALTAVGDDDQSIYALRGAQVKNLQYLQEDYPQ--- 287

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  II+L  ++R    IL   + + +   +                          
Sbjct: 288 -----LHIIKLEQNYRCHHKILQAANTLIAHNPHLVEKR--------------------- 321

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW Q+           +                   A RIA  I              + 
Sbjct: 322 LWSQLERGDGVCVFAARND--------------EAEAERIASAIYQ---------QKLRT 358

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               ++  VL R       I    R    D  I    +      +H  I+DL+A  R I 
Sbjct: 359 QAAWQNFAVLYRSNFQARAIEQALR----DVSIPYQISGGTSFYEHSEIRDLLAYLRLIN 414

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQ 482
           + EDD +F+ +   P        +  +          ++    +       +       Q
Sbjct: 415 NPEDDAAFLRICNVPKREIGTKTLTVLGEYAAKRQCCLFYAATELGLATLLSARAAMSVQ 474

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLN-FTL 537
              ++I E    A+   P      ++     R+   +        +    ++E +     
Sbjct: 475 QFCQWIEEKQKEAETALPSALLQTVIDEVAYREYIEANEAPAKAEKRWARVEELIAWLVR 534

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E+  Y SL  L+  +        +      + V++MT+H AKGLE P V++      +
Sbjct: 535 LEEEERYQSLAGLMRHVLLLDILEHQDKQ--KDGVQLMTLHAAKGLEFPYVYIAGVEEDL 592

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H H                                      +    E  RLLYVGMTR
Sbjct: 593 LPHHHCG----------------------------------ESEEAIAEERRLLYVGMTR 618

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           A  QL +       + K     T    + +        +  +             E
Sbjct: 619 AKFQLTLSYAKQRRHGKNWEASTASRFLQELPEEGIDWQDGRRAIDEQALNEKREE 674


>gi|254708085|ref|ZP_05169913.1| DNA helicase II [Brucella pinnipedialis M163/99/10]
          Length = 611

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 75/463 (16%), Positives = 141/463 (30%), Gaps = 102/463 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y+E  +     DF DL+++   + +       I  +   +  +IL+DE QDT+ 
Sbjct: 212 RELYQAYQERLRTLNACDFGDLLLHPIRIFRNHPD---ILREYHAKFRYILVDEYQDTNT 268

Query: 191 IQWEVIRSLTE-----------------------------DFFVGKNTHSSPRTLFAVGD 221
            Q+  +R L +                                           L  VGD
Sbjct: 269 AQYLWLRLLAQRPKSRTTAPTQAGGSPVQPARASEGPCGAGERSELGVSEDKVNLCCVGD 328

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY + GAE   +LR ++              +I+L  ++RSTA IL     + +  
Sbjct: 329 DDQSIYGWRGAEVDNILRFEKDFP--------GAVVIKLERNYRSTAHILGTAAHLIAHN 380

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E   G +  +                               +  +    + +DS  +   
Sbjct: 381 EGRLGKTLFTEAP--------------------------NPDDPRVKVHAAWDSEEE--- 411

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               AR +   I        + +N          + +LVR              L     
Sbjct: 412 ----ARAVGEAIEQAQRQGHLLNN----------MAILVRASFQMREFEDRFVTL----G 453

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQR 460
           ++          + L I+D MA  R +    DDL+   ++ +P     E  I +I    R
Sbjct: 454 LNYRVIGGPRFYERLEIRDAMAYLRVVAQPADDLALERIINTPKRGLGEAAIRQIHDYAR 513

Query: 461 HETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +++          +      S  + V++       +       +    IL      
Sbjct: 514 ARDISMFAAACDLIETEELKPKPRSALREVVENFLRWQSLIDTTPHTELAETILDESGYT 573

Query: 515 QQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
             + +    E    ++ L E +      E     SL+  +  +
Sbjct: 574 AMWQNDKSAEAPGRLENLKELIRSMEEYE-----SLRGFLEHV 611


>gi|116515298|ref|YP_802927.1| ATP-dependent DNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257152|gb|ABJ90834.1| ATP-dependent DNA helicase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 648

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 189/558 (33%), Gaps = 123/558 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               YE   K++ +LDF DLI    +LLKK      I+ K  ++I ++LIDE QD +  Q
Sbjct: 168 FYEKYEFFLKEHNILDFHDLIFLPTNLLKKNI---NIQLKWQKKIQYLLIDEYQDVNSSQ 224

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++I+ L                L  VGD  QSIYS+ GAE K     K           
Sbjct: 225 YKLIKLLCGY----------NSNLTVVGDNDQSIYSWRGAETKIFYLLKNDFPN------ 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              +I+++  ++RS+  IL V + + S   N       S     ++              
Sbjct: 269 --LNILKMEQNYRSSGRILHVANILISHNINFFHKKLFSKLDYGNK-------------- 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                  + +  +    A++I   I           +  K   +
Sbjct: 313 ---------------------IYILKSMNEIHEAQQIIQYIK---------FHKNKYQGR 342

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R       +            I  + +      D L IKDL+A  R +++Q 
Sbjct: 343 YNDYAILYRSNYQVRAVETEL----IYQNIPYLIHSGCSFFDLLEIKDLLAYLRLVINQN 398

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           DD +F+ ++  P        I K+    ++   +++            + +++I  ++  
Sbjct: 399 DDFAFLRIINVPNRKIGLITISKLKKFAKNNKISLFVASTDNRMKLQLR-KNIINTLNNF 457

Query: 492 ------IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-----IDVLDEFLNFTLRN- 539
                 + +     P      I+   K      + + + V        +  F  +  +  
Sbjct: 458 VVWILKLTLILSKKPEKILEYIIRDTKYFSWIQNFYTDSVIIKKKKKNIVFFSKWLKKML 517

Query: 540 ---EQNSYSSLQELISELEQYPPTI--KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              + +    L++++                    +++++MT+H++KGLE PVV ++   
Sbjct: 518 IGNDFHIPMKLEDILIHFICGDLDYSSFNTKKKRLDKLQLMTIHSSKGLEFPVVCIIGME 577

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                H+                                   K +  +   E  RLLYVG
Sbjct: 578 EGTLPHQ-----------------------------------KSILDNNITEERRLLYVG 602

Query: 655 MTRASDQLIICKHSNTSN 672
           +TRA  QL +        
Sbjct: 603 ITRAKSQLFLSFCKKKRK 620


>gi|326560347|gb|EGE10734.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis 46P47B1]
          Length = 1315

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 151/1017 (14%), Positives = 303/1017 (29%), Gaps = 158/1017 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +    +            K+    +IN+      + L    + ++ + ++ N Y   
Sbjct: 328  DALKLIDAIIKAMDKDWQIFNKSANPSDINQFLALPLQALSDIANVYLTLSEQTNLYHTH 387

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                  L+    +    E     +    F   ++  N+ L+       +  +I       
Sbjct: 388  ICRHIILSAKSQIAQRLET----HGQTTFTLQMVRLNEALRNSPA---LARQIRHHYPVA 440

Query: 181  LIDEVQDTSLIQWEVIRS-------------LTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            LIDE QD + +Q E+I               +  +   G+        L  VGD KQ+IY
Sbjct: 441  LIDESQDINGLQVELIELVYLNEIANYHKNLIRYEQIGGEKPKLPRGFLLLVGDPKQAIY 500

Query: 228  SFHGAEPKRVLREKRI-NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQ 285
             F G +       K   NQ     A      + L ++ RS+  ++  ++  F    ++A 
Sbjct: 501  RFRGGDVTNYNLIKHYGNQDLLIKAPLMNQSLSLTVNRRSSKALIEALNAWFDNNHQDAV 560

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                +    I ++  +  + G    W+           P       +FD +     A+  
Sbjct: 561  ANHANLGQGIFYQQIQAHKDGGGIHWQSDAYADYYGKYPIAV---LHFDHIEAGQKAAQR 617

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +IA  I+ ++  D        + I  KDI VL R       I      L     I  +
Sbjct: 618  AEQIARHINTILQGDHTLHG---QKILPKDIAVLGRTADTLDRIKSELDQL----NIPAI 670

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                  +    A  DL+AL   IL      +    L S L   +      I     +   
Sbjct: 671  IPKEMNIFITQAADDLLALIGAILQPNHSENLGKFLVSSLVGMTLKQAINIIEPNDQ--- 727

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-------I 518
              + +    +   +   H++ Y+ +     Q           L                 
Sbjct: 728  --QALDNDLSETQNLKTHLLAYLKKSYEKWQKFGVSSALAYALHHSPIDYDDDKSPWLKA 785

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMT 576
            +  G   +  L+  +       Q     +     +                + + V +MT
Sbjct: 786  ATQGERYLVDLERLVALVSEQSQLHEMRIIAWYHKQMNADVDSHNKRPILPSESGVNLMT 845

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P+V+++    +  +      + I P  N +    + + Q    +       
Sbjct: 846  IHKSKGLEFPIVYVIGMDEKPKNEN---GLTIYPYTNHNFQRCLSLSQGNLIDENY--YY 900

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN----D 692
               ++   +E  RL YV +TRAS+QL I       ++K S +   Y  +  +        
Sbjct: 901  HINQQELIDEIRRLGYVALTRASEQLYIVG--GDLSKKTSKEMPLYQWLDCAGEKILSLP 958

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +R+K       + + +  +  + T  P+ +          +   Q   +   S       
Sbjct: 959  DRLKGWVDWIDLTEADLFSQPYQTKLPDLSTKNYAPWDMVMTKTQFFGEYKTSFSALITR 1018

Query: 753  EPY-ILNPSTIDTKGKTNLESLLSDN----------QTFNRGLIIHKLLQVIFT------ 795
                 ++P   D    + L  + + +          +    G  +HK++Q + T      
Sbjct: 1019 LDKSAISPDEADIDQLSVLTDMAASDQFDDIRTSFFKGSLAGDFLHKVMQFLPTDRLALA 1078

Query: 796  -------------LPEHKRKNFITSYC-TKNAKLWP---------AKEYKNLLLSITRLL 832
                           + ++      Y  T+ A+            A ++  L+  I +L 
Sbjct: 1079 SLHDAHRIISGVIYEQGRKLGIAERYLPTRPAQQIGTRINSNEHQADDHTKLVAWIYQLA 1138

Query: 833  ENP---------------------------------MMTTAMSCDSYSEVSVSGKINCPK 859
              P                                  +       S  ++ +        
Sbjct: 1139 YAPFRASHRSLMSLPMTVQLRELSFTLGLGDTFSITRLNEVFKAHSDKDLVLLDDDYHTM 1198

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKI 910
            +   + G ID +    +  FI +YK+++      E+             +  Q +IY+  
Sbjct: 1199 RYRYLRGEIDLVYECDRRFFIVDYKSNYLGSTPDEYHDHAMAAVMDKVGYWLQAAIYQVA 1258

Query: 911  LKDSYPNK------SLVCLL-----IYVS--------EPKVFIIPQNKLNKAFAEIS 948
            L      +      +    L     +++            +   P   L  A  EI 
Sbjct: 1259 LHRLLKIRLKDYVGNEAAYLGAVEYVFLRGVQEGNEKTGHLCWQPPLSLILALDEIL 1315


>gi|149012919|ref|ZP_01833832.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP19-BS75]
 gi|147763208|gb|EDK70148.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP19-BS75]
          Length = 534

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/509 (16%), Positives = 154/509 (30%), Gaps = 109/509 (21%)

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
           S  + +  VGD  QSIY + GA+ + +L  ++   K          ++ L  ++RST  I
Sbjct: 7   SRFKNICVVGDADQSIYGWRGADMQNILDFEKDYPK--------AKVVLLEENYRSTKTI 58

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           L   ++V    +N +  +                     LW           + +Q  + 
Sbjct: 59  LQAANEVIKNNKNRRPKN---------------------LW-------TQNADGEQIVYY 90

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
              D L +       A  +A TI  +  +               D  VL R    +  I 
Sbjct: 91  RADDELDE-------AVFVARTIDELSRSQNFLHK---------DFAVLYRTNAQSRTIE 134

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                      I               I+D++A    I +  D++SF  ++  P      
Sbjct: 135 EAL----LKSNIPYTMVGGTKFYSRKEIRDIIAYLNLIANLSDNISFERIINEPKRGIGL 190

Query: 451 DDIFKIC-TQRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
             + KI      +  ++ +                        + +L       S  +  
Sbjct: 191 GTVEKIRDFANLQNMSMLDASANIMLSGIKGKAAQSIWDFANMMLDLREQLDHLSITELV 250

Query: 505 TLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN--------EQNSYSSLQELISE 553
             +L          ++   E    ++ ++EFL+ T           E+     L   +++
Sbjct: 251 ESVLEKTGYVDILNAQATLESKARVENIEEFLSVTKNFDDTTDVTEEETGLDKLSRFLND 310

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           L     T   +   +   V +MT+H AKGLE PVVFL+     VF               
Sbjct: 311 LALIADTDSGSQETSE--VTLMTLHAAKGLEFPVVFLIGMEENVFPLS------------ 356

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL YVG+TRA   L +   ++    
Sbjct: 357 ----------------------RATEDPDELEEERRLAYVGITRAEKILYLTNANSRLLF 394

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            ++N       + +   +    + +    
Sbjct: 395 GRTNYNRPTRFINEISSDLLEYQGLARPA 423


>gi|111115168|ref|YP_709786.1| DNA helicase [Borrelia afzelii PKo]
 gi|216263989|ref|ZP_03435983.1| DNA helicase [Borrelia afzelii ACA-1]
 gi|110890442|gb|ABH01610.1| DNA helicase [Borrelia afzelii PKo]
 gi|215980033|gb|EEC20855.1| DNA helicase [Borrelia afzelii ACA-1]
          Length = 698

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/544 (17%), Positives = 173/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  +  +   I +DE QDT+  
Sbjct: 166 EYIKIYEEEKTKNNAFDFSDLIIKPILMLRQS---KSLKESVQSKFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFAN----- 267

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +   L  ++RS+++I+++ + V S  +N       +  +   R             
Sbjct: 268 ---VAKFYLVQNYRSSSNIVSIANGVISKNKNRYEKQIITQNSYDKR------------M 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +V Q  S       +     D                                     
Sbjct: 313 KFLVFQSTSDEAEYFSNLLVDNDVET---------------------------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               IS          D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNISYKVLGSIKFYDREEIKDIICLLRLFINR 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC---TQRHETETVYEYIQKFANCGISKFQH----V 484
           +D ++F+ ++  P     +  + KI            ++   +K  +   +K +      
Sbjct: 390 KDKIAFLRIINKPSRGIGKTTLDKIISVLNDDDVNFNLFCASKKVLSSLKNKAKESLLLF 449

Query: 485 IKYIHELIHIAQ---FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           +    EL        + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 VNAYDELSKKLFEDNYINLSAFIEDVVIKFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGDFKSN-IFLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|118476800|ref|YP_893951.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416025|gb|ABK84444.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al
           Hakam]
          Length = 688

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 107/657 (16%), Positives = 207/657 (31%), Gaps = 116/657 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   +         +++ N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I  +  I +  S    
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERIDFIKFIKELESKKAL 516

Query: 504 FTLILGAKKGRQQFI--SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ----Y 557
             +I G  K  +      R    +   + E +   L    N ++ +   +  +++     
Sbjct: 517 KEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQGQ 576

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                       + V +M++H AKGLE P VFL+     +  H    K            
Sbjct: 577 KEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD----------- 625

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                          ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ---------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|216264361|ref|ZP_03436353.1| DNA helicase [Borrelia burgdorferi 156a]
 gi|215980834|gb|EEC21641.1| DNA helicase [Borrelia burgdorferi 156a]
          Length = 698

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 95/544 (17%), Positives = 172/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFSNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +              G+ +  
Sbjct: 270 -----KFYLVQNYRSNSNIVGIANEVISKNKNRYEKQITTQN------------GSNKRM 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +V Q  S       +     D                                     
Sbjct: 313 KFLVFQSTSDEAEYFSNLLVSNDIET---------------------------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D +SF+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLDKIISTLNDEDVNFNLFCASKKTLGLLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +V   + + +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYDELGKKLFEDNYINLSTFIEDVVIRFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGDFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|300869707|ref|YP_003784578.1| UvrD/REP helicase [Brachyspira pilosicoli 95/1000]
 gi|300687406|gb|ADK30077.1| UvrD/REP helicase [Brachyspira pilosicoli 95/1000]
          Length = 788

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 132/826 (15%), Positives = 259/826 (31%), Gaps = 108/826 (13%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL-TEDF 203
            V   ED+I    + L+   ++  IR      IN +++DE QDTS +Q+  I  +   + 
Sbjct: 2   GVYSHEDMISKAIEALENNTINKEIR----DNINTVILDEAQDTSKLQFSFINLIVFGNR 57

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
            + K T    + +  VGD KQSIY F  A+       + I +           +  L  +
Sbjct: 58  EITKETTIKDKKILIVGDRKQSIYRFRNADLNVFRNAQNIFEDY---------VRYLQDN 108

Query: 264 FRSTADILTVVDKVFSI-PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           +RS   ++   + +F         +       +    +   +   V L     +  D   
Sbjct: 109 YRSKEMLINFFNDIFENTIFKDDTIKYKKDDNLISGQNDNTKSKLVSLLVFNNNIDDD-- 166

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                        L  +S   + A  IA  I   +  D             K+  +L++ 
Sbjct: 167 -----------IKLNSDSKTILEAYAIAKFIKTNLKND------------YKNTAILLQT 203

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                +   +    K    I    +      D + I +L+   ++++  +D      +L 
Sbjct: 204 FSRLNIYLSVFAEEK----IPYYVDGGNGFYDRVEISNLIICLKYLVL-KDYSLLQSLLM 258

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-------------FQHVIKYIH 489
           S LF+    +++              Y     N    K              +   + ++
Sbjct: 259 SELFDIKIANLYDFSIDLKLNGNYNLYDYFSLNDCKEKTLEIAKKKKYYDELKKAKELLN 318

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            +       S +D    I           +          +++        E  +  ++ 
Sbjct: 319 NIELKISTMSSYDAIETICTETNYYNYLMLKEDAEISYANIEKLKKLAYDFENRAGVNIY 378

Query: 549 ELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           + +  L+     I  A     + + +RIMT+H +KGLE   VFL   G    +  ++   
Sbjct: 379 DFVISLDMNAKDISYATIPKLSVDAIRIMTIHKSKGLEFNNVFLAGAGHYRAAQNNMFDF 438

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                  + P       + + +    S    +   + + E  RLLYV +TRA ++LII  
Sbjct: 439 VENFPYIEIP----IHGEIEEKLKFFSKDDNYNSLADKSEKKRLLYVALTRAKERLIISG 494

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP------- 719
                          Y   Y  F  ++ V           D    +     +        
Sbjct: 495 EDRYKRFDDPKSYRNYIEAYHHFDIEDSVDNTTDDLIYIDDNTNEFMDYYSYGISKNTNY 554

Query: 720 ---ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL------ 770
              E      E+  K++              K +   P  +  +  D    + L      
Sbjct: 555 DLNELYINNLEKINKKIDSININDTISEKTKKIEYVNPSEVLDTDFDKNIISRLLNKNIS 614

Query: 771 ----------ESLLSDNQTFNRGLIIHKLLQVIFTLP-----EHKRKNFITSYCTKNAKL 815
                        L   +  + G+++H LL+           E   +        +N   
Sbjct: 615 ISLNDDKKFDLENLETIKAIDMGILMHNLLEHFNFDEYKLHKESYIEKIKNDTIKQNKHY 674

Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSY---SEVSVSGKINCPKKDIIISGRIDQIS 872
                 K L    T  + N  +   ++ +      E     +     +  II+ +ID   
Sbjct: 675 DEKDLRKKLDKYFTNFINNKHIANIINGEELIVSREHKFQERKLIENRTQIINAKID--I 732

Query: 873 ISQQ---NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
           I++      FI +YKT  +  ++ +     +  QL +Y  I+K ++
Sbjct: 733 ITKNISEEYFILDYKTTKYSKEKED----KYKTQLEMYRDIVKKTF 774


>gi|172040184|ref|YP_001799898.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
            DSM 7109]
 gi|171851488|emb|CAQ04464.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
            DSM 7109]
          Length = 1219

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 143/1036 (13%), Positives = 282/1036 (27%), Gaps = 229/1036 (22%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +++  ++  L + +++ +    K   +   YK+  +    L L  ++   Y E  ++  V
Sbjct: 226  KDVRGETEALIDTIQQVEHGVGKPLSK-AAYKLRDANQERLDLLPWV-KKYWERLQELDV 283

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
              F   +     L  +  +   +     +    +++DE QDTS  Q  ++RSL  D    
Sbjct: 284  RTFGQQMTLAAKLASEHAI---VGQSQRERFRVVMLDEYQDTSHAQRVLLRSLFGD---- 336

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                     + AVGD  Q+IY F GA    +   +     R    G+     EL  S+R+
Sbjct: 337  --GQDDELAVTAVGDPMQAIYGFRGATSSNLGNFETDFPFR----GEPAQKFELTTSWRN 390

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             A +L + + V S          ++ T    +     + G +Q+          + + + 
Sbjct: 391  PASVLELANVVSSRTLG------ENRTVSELKPRAGAEDGEIQVAFF------DEEDQEL 438

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
            E  T       +       A  ++                    +      VLVRK K+ 
Sbjct: 439  EWLTDQLQQRWESFKKRKEAAAVSGE-----------------KVDPFSAAVLVRKNKEA 481

Query: 387  PLITFLTRFLKNDYKISVVGNDRFILTDHLAI-------------KDLMALGRFILSQED 433
              I  L R       + V       L D   +             +D  A+ R +     
Sbjct: 482  LPIFELLRA----KGVPVELTGGAGLLDIPEVADVYATLRALVDPEDDPAMLRLLTGPRF 537

Query: 434  DLSFVCM-----------------------------------------------LKSPLF 446
            +L    +                                               L+SPL 
Sbjct: 538  NLGARDLQILARRAQQLQRRAKGDTDPGEVNQDTTSAGGEDPWIHNPAYEELKSLESPLR 597

Query: 447  -----NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
                          +       +      Q  +  G      + + +  L          
Sbjct: 598  EQLLEAIPNPADATVGLADAIADFADAEEQGMSPRGARAIAELSRELGHLRRNCLTKPLP 657

Query: 502  DFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRNEQNSYSSLQELISEL-- 554
            D    I      R + ++R+     D      LDEF +      Q   S+   L+  L  
Sbjct: 658  DLIADIEDMIGIRTEVLTRWHRNPDDSIGTSHLDEFADIVQSFSQLGGSNASILVDYLRA 717

Query: 555  --EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
              E           A  + V+I+TVH +KGLE  +V +     + F       + +   L
Sbjct: 718  AHEHDSGLEPGEVEAKTDTVQILTVHRSKGLEWDIVAVPYAHRKNFFDAETPGVRLEEWL 777

Query: 613  NDDPGIPI---------------------WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            +    IP                         +S             L+    +E  RL 
Sbjct: 778  HKAERIPSSLRGDAENEGQPGGYPLYDASHAEKSADLTKAADAFEVQLQAKEAQESERLF 837

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY---------------DSFHNDERVK 696
            YVG+TR    L++   + +S     +      ++                 ++ +  R  
Sbjct: 838  YVGITRTERVLLVSGSAYSSGVTAVDPSLNLVLLRNRITDSRAPLAGASVHTWSDLGRKP 897

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK-------- 748
                   + K      +   +      + RE+   +    +   ++   P          
Sbjct: 898  SKSDAARVEKGNATEIDHYFYPTPEQLIAREDYALERRRAEADGEQASWPQPAPLASRPG 957

Query: 749  --------------------------------NDINEPYILNPSTIDTKGKTNLESLLSD 776
                                               +E   L       +  T +E  L  
Sbjct: 958  AADGAGMVIDAIGAATTGDSATESAASQDMLTRQWDEETRLLIQEHQQRTLTAVEVPLDP 1017

Query: 777  NQTFNRGLIIHKLLQVIFT----------LPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
              T  + + +++  +               P  KR     ++  ++       +   +  
Sbjct: 1018 MLTATQAVAMNQDPEQFARRRRRPIPMQPQPYAKRGTAFHNWVEQHYNQAMLFDEDEMPG 1077

Query: 827  SITRLLENPMMTTAMSCDSYSEVS------VSGKINCPKKDIIISGRIDQISISQQ---- 876
            +    L++P +    +    SE +      V G         + +GR+D +    +    
Sbjct: 1078 ASDATLQDPQLEELKNKFLGSEWAQRTPESVEGSYLVNIGGFVFNGRMDAVFHEGEDPAA 1137

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--------PNKSLVCLLIYVS 928
               + ++KT                 QL+ Y                P  ++     YV 
Sbjct: 1138 GWLVVDWKTGQMPTGRDMKNAE---LQLAAYRLAWAKILSRQLGVEVPVDNVRTAFFYVR 1194

Query: 929  EPKVFIIPQNKLNKAF 944
                  +      +  
Sbjct: 1195 TQHTHYVQDLPNEEEL 1210


>gi|331005026|ref|ZP_08328431.1| ATP-dependent DNA helicase pcrA [gamma proteobacterium IMCC1989]
 gi|330421154|gb|EGG95415.1| ATP-dependent DNA helicase pcrA [gamma proteobacterium IMCC1989]
          Length = 1260

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 144/1029 (13%), Positives = 284/1029 (27%), Gaps = 214/1029 (20%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIIT-------------QEINKKSPDLKEKLKKSQDEF 107
                ++  ++   LTQK   +K+                +E   ++   K++  +   + 
Sbjct: 292  DAVPQWEGIAELLLTQKNELRKSPTKDIGFFAPSAKHLSKEQQAEAKIYKQRFSEVIAQV 351

Query: 108  IKIRDRFNTYKMFKS-----------------TLASLTLAKYLNAHYEEAKKKNCVLDFE 150
              + D   T    +                  T   + LA+ L   +++  K     D+ 
Sbjct: 352  SALPDIEKTLGTIRKLPSPFYNTKQWQLLDSLTHVLVNLAQNLTVAFQQLSKT----DYL 407

Query: 151  DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
             + +   D L + D  + +   +D +I HIL+DE QDTS  Q  ++  LT  +       
Sbjct: 408  AVTLAALDALGESDSPSDLALALDYKIQHILVDEFQDTSTTQLRLLERLTAGWQTDDG-- 465

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
               RTLF VGD  QS Y F  A     L  +         +      + L ++FRS   I
Sbjct: 466  ---RTLFVVGDAMQSCYRFRDANVGIFLNVRE-----YGLSDIYLEPLNLQVNFRSQQHI 517

Query: 271  LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
            +  V+  F                    +      G V     V           Q    
Sbjct: 518  VDWVNHSFDHI---------------FPAQNDSNRGAVSYSPSVSFNAPLDIPAVQTHLI 562

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
            SY D+ P  S     A      I              ++      I +LVR R     I 
Sbjct: 563  SYSDTTP--SPRKEEAAIAVDIIQR-----------TQQAQPTDSIALLVRSRAHVQDII 609

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                       IS    D   L   + + D ++L + +L   D L+++ +L++P    + 
Sbjct: 610  HALSA----ANISYQATDIDRLNTCMPVLDCLSLTKALLYPNDRLAWLAVLRAPWCGLNM 665

Query: 451  DDIFKICTQRHETETVYEYIQK-------------FANCGISKFQHVIKYIHELIHIAQF 497
             D+  +   +   +     +                ++ G  K       I + +   + 
Sbjct: 666  TDLLAVAEHQKLEKRWSLLLHNINAGDIGTLTKKPLSDKGKQKLHRFNTVIQQALSQQKR 725

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-----------SS 546
                 +   +  A  G    ++       + +  FLN     +Q              + 
Sbjct: 726  HGLRHWIHSVWLALGGPALLLN---PSDEENIHTFLNVLDHYDQGGIIKQWDDVEKAVND 782

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            L                   ++   V+IMT+H +KGLE   V +        S      +
Sbjct: 783  LYASPKAAASTDANDNDNPQSSVKPVQIMTIHKSKGLEFDTVIIPALDKGKRSDDKELIV 842

Query: 607  HIMPSLNDDPGIPIWI--------PQSKSRNNIVSDLIKHLKKSTQEEYNR--------- 649
             +    +                    +  + I   + +   +  Q E +R         
Sbjct: 843  WLERIGHSVEEHQQQSQLLISPINATGEDPDPIYDFIRQQHAEKEQLESDRVLYVGCTRA 902

Query: 650  ------LLYVGM----------------------TRASDQL------------------- 662
                  L Y  +                      T +   L                   
Sbjct: 903  IKQLHLLAYSAIDSKKLEGCEISNNIAPTIELLKTPSKHTLLSRLWPSIQQSDSTHLHIS 962

Query: 663  ----IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                I     + ++    N +  +     S  +  +   I   N +          +   
Sbjct: 963  QSDVINVGDDSGNDANDKNHKRRHPNKIVSLSSHWQAPTITANNILAAYRGNNVLATLET 1022

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-NLESLLSDN 777
                    E+   +    +K              +  ++    I  +         L   
Sbjct: 1023 TGTEKESSEKEQSEKQKTEKQQTINTQSDLFSAPQDNVVTEKNIQKQKDNIATPDALLQR 1082

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                 G +IH  LQ I      +         +    +  ++        +    L ++ 
Sbjct: 1083 DQRYIGTVIHLALQHITDTDYQQWNTPRIQQQRPIWKNQLSQQG--ISPHKLDAALATVE 1140

Query: 830  ----RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS----------- 874
                + L +      +    + E +   +I   K        ID+  +            
Sbjct: 1141 HAITQTLHDKTGQWLLDTR-HPESATELEIWNAKGQH----IIDRTFVEIKSEIESEKNK 1195

Query: 875  -QQNIFIFEYKTHHHVPQEIEHI-------PYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             ++  +I +YK     P+  E +          +  QL+ Y+K+ K+   +      L +
Sbjct: 1196 GKKTRWIIDYK--RSQPKADESLEQFVATEKQAYQKQLNRYKKLFKE--KDTETRAALYF 1251

Query: 927  VSEPKVFII 935
            V   +   +
Sbjct: 1252 VLIQEWVEV 1260


>gi|228932604|ref|ZP_04095483.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228827073|gb|EEM72828.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 568

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 103/611 (16%), Positives = 199/611 (32%), Gaps = 109/611 (17%)

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
                K I+ ++I K+   LK+              +++ N  K  K+        K + 
Sbjct: 33  ANEKHKQIMIKKILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVY 91

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             +EE K++   +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E
Sbjct: 92  ERFEEVKQRYNYIDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYE 148

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L           S    LF  GD+ Q+IY + GA  + +L   +            
Sbjct: 149 IVKLLA----------SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN-------- 190

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
            +II L  ++RS   I+ + ++V  + +        S      +        T+      
Sbjct: 191 TTIIALNTNYRSNPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----- 245

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                          A +I   I   + +              K
Sbjct: 246 ------------------------------EANQILQLIQEKVDSGER---------NYK 266

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    +     L   L       +         +H  IK ++   R ++     
Sbjct: 267 DFCLLYRTHSVSR---SLLDQLTIHKIPFIKHGASQSFYEHSLIKSVLDHLRLVIEPFRL 323

Query: 435 LSFVCMLKSPLFN----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            S   +L +         S  +  +         ++  ++    +    + + V + I +
Sbjct: 324 ESLSNILPTMYIGRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-D 382

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
            I   +   P      I+  K    +++         +  +     L     S +   ++
Sbjct: 383 FIKFIKELEPKKALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDI 442

Query: 551 ISELEQYPPTIKRAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + L+     I+              + V +M++H AKGLE P VFL+     +  H   
Sbjct: 443 PAYLQFVDEAIQGQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSS 502

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            K                           ++          EE  RLLYV +TRA ++L 
Sbjct: 503 LKD--------------------------ANDRVTETSEALEEERRLLYVAITRAKEELY 536

Query: 664 ICKHSNTSNEK 674
           I        +K
Sbjct: 537 ISSPQFFRGKK 547


>gi|229090274|ref|ZP_04221519.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-42]
 gi|228693054|gb|EEL46770.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-42]
          Length = 681

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 107/658 (16%), Positives = 206/658 (31%), Gaps = 120/658 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 165 ILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L       
Sbjct: 224 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------ 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 275 ----SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 322

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 323 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 365

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 366 ------------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVS 398

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  IK ++   R ++      S   +L +   
Sbjct: 399 R---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYI 455

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 456 GRDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKK 514

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 515 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQ 574

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 575 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 625

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            ++          EE  RLLYV +TRA ++L I        +
Sbjct: 626 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFLEEK 666


>gi|167748929|ref|ZP_02421056.1| hypothetical protein ANACAC_03710 [Anaerostipes caccae DSM 14662]
 gi|167651551|gb|EDR95680.1| hypothetical protein ANACAC_03710 [Anaerostipes caccae DSM 14662]
          Length = 618

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 109/603 (18%), Positives = 199/603 (33%), Gaps = 128/603 (21%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           ++ D  + L+    E   ++ +  +   + S   + ++ + +   Y E  +KN  +DF+D
Sbjct: 122 ETGDEPDFLRSLISEISLVKGQLLSMDYYHSQSCADSVFQLIYKQYNEKLRKNQWMDFDD 181

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +++ T  LLK+      +      +  +ILIDE QD S IQ+E+I+ L            
Sbjct: 182 ILVYTYSLLKE---REDLLAAWQNKFQYILIDEFQDISPIQYEIIKMLAA---------- 228

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               LF VGD+ QSIY F GA+P+ +L   +          +    I+L +++RS+ +I+
Sbjct: 229 PRNNLFIVGDDDQSIYRFRGAKPEIMLGFPKDY--------KDSEKIQLDVNYRSSPEIV 280

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               KV  + +                               + S  D +   +  ++ +
Sbjct: 281 EASQKVIRVNKKRFDKE-------------------------IRSCRDREVPIELRTFKN 315

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
             +              +A  + +                  ++  +LVR       +  
Sbjct: 316 QQEECT----------YVAKRLRDEYEKGHP----------YEESSILVRTNLGARTMLG 355

Query: 392 LTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                   Y I     D    L +H   +D++   R  L      +F+ ++  P    S 
Sbjct: 356 KLME----YNIPFTVKDGIPSLFEHWIARDIIDYMRMALGDRRRSTFLRIMNRPKRYISR 411

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           + I +      +         K            I  + E + + +   P    T I  +
Sbjct: 412 EYIDQPEISFED--------LKEKTRDKEWLYDYIDELEEDLRLLKDMMPFLAVTYIRKS 463

Query: 511 KKG------RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                      +       E+ DVL+E        +     + +E    + +Y   +K  
Sbjct: 464 VGYNAFLSEYARIRKLKEEELTDVLEELQETARGYD-----TYEEWFDFMRRYTEELKAQ 518

Query: 565 HSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
             +       V I T+H+AKGLE   VFL+D    V                        
Sbjct: 519 SESRNQGKQGVVISTLHSAKGLEYERVFLIDVNDGVIP---------------------- 556

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                          K +K    EE  R+ YVGMTRA   L +       N+        
Sbjct: 557 -------------YKKAVKTEELEEERRMFYVGMTRAKKYLHVFSVEKMYNKDSKVSDFI 603

Query: 682 YDM 684
             +
Sbjct: 604 LPL 606


>gi|165975830|ref|YP_001651423.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
 gi|165875931|gb|ABY68979.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
          Length = 1202

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 132/991 (13%), Positives = 278/991 (28%), Gaps = 151/991 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ--TQCIEERFSLL 69
            + +    D          +I++ +   +     T  KKA   +       +         
Sbjct: 221  ALQHFLADAKRHWSAHGEEISRLIESELAKKYKTGEKKALNRRSYQTRYLEKWRASVDEW 280

Query: 70   SSFFLTQKFTPQ-----KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
            ++  L+     Q     +  + ++  + +  L         + +    +    K      
Sbjct: 281  AASSLSYLPEEQFERFCQEFLNEKAEEGAEPLVHPHFAKNQQILTAYQQQFANKQKPLL- 339

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                    +     + K  +    F D++   N  L   +  A +  +I  +    +IDE
Sbjct: 340  -LYQFLLAVRTKLADYKATHSEKSFNDMLTLLNQAL-NAERGAELAAQIRAQFPFAMIDE 397

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT   Q+E+   +            +      +GD KQSIY F GA+    L   +  
Sbjct: 398  FQDTDKEQYEIFHKIFMQETH------TNHGFIMIGDPKQSIYKFRGADIFTYLTASQ-- 449

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                    Q      L  ++RS   I++  +++F  PE A+           H       
Sbjct: 450  --------QAQQKRTLAKNWRSLPPIVSATNRLFEFPEAAENSPFLYQGIQFH------- 494

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                       S        +          L  +    + A++ AY I   +       
Sbjct: 495  -----------SVEAKASEAELIGADYVNCYLQAKFDEKLAAKQCAYQIQQQLKQMEAGE 543

Query: 365  NG--------KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
             G        +    QAKDI +LVR      LI      L      SV  +++  +    
Sbjct: 544  FGLKFTNTTEEINAFQAKDIAILVRSHSQATLIKSALAELGIR---SVFLSEKESVYQSE 600

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
              K+L+ +    L+       +  L + L+  S  +I ++     E +   +  +     
Sbjct: 601  TAKELLWVLYACLNPYHQRHLLSALGTTLWGLSATEIHQLKNS--ELQWDEQVGRFITYQ 658

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
             I + Q ++  +H+L               +    +   + ++         L E L   
Sbjct: 659  QIWQQQGILPMLHKLFMQ------EGIIERLRANPRDSDRRLTDLL-----HLTELLQNA 707

Query: 537  LRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            + + +N  + ++    +L +            +    ++I+T+H +KGL+ P+V+L   G
Sbjct: 708  MPSLENESALVRWYERQLAKIDSTEEHILRLESEEELIKIVTIHGSKGLQYPIVWLPFIG 767

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +    K                                 +   + +    E  RLLYV 
Sbjct: 768  KKNQGAKASNLAIYRDEQG---------LAHWYFGKPSEQVQALMDREELAEDLRLLYVA 818

Query: 655  MTRASDQLIICKHSNTSNE--------------KKSNQRTWYDMVYDSFHNDERVKKIKL 700
            +TRA  QL +       +                  + +                + ++L
Sbjct: 819  VTRAESQLNLILPQRFEDGWNAVHYLLSNGEIGLDKSYKAEISTSEYLQQKGIDCQAVEL 878

Query: 701  TNSINKDEWIAYEWSTHHPEN----------------TPLEREETIKQLMDEQKIPKKLF 744
               I  D+W    + +                     + L ++              K F
Sbjct: 879  DEKIANDKWRPAPFVSETLSAYHFSGQIQQTGLVTSFSALHQQHEWAMQHHTGYSMPKAF 938

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLL----SDNQTFNRGLIIHKLLQVIFTLPEHK 800
                 D ++  +L   T +     N E+          +   G I+H   +         
Sbjct: 939  ESAGQDYDQQQVLTLETDNLFALDNEETNAYSSYQFPHSTKVGNILHSFFEHSDFQQAVD 998

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---MMTTAMSCDSYSEVSVSGKINC 857
             +  +T            +  +     +     +     +         +E     ++  
Sbjct: 999  FEQILTICEQLGLDENWHEPLQKWFEKVLATPFSETEFALKDVPITKRLNEWQFYLRLKN 1058

Query: 858  PKK--------------------------DIIISGRIDQISISQQNIFIFEYKTHHH--- 888
                                         +  + G +D I    +  ++ +YK++     
Sbjct: 1059 SDGLRKLNQLLKQYSAVSAKLPDLNLPQLEGYLRGFVDCIVQVNEKFYLIDYKSNFLGYL 1118

Query: 889  ----VPQEIEHIPY--THIAQLSIYEKILKD 913
                  Q +E       +  Q  +Y   L  
Sbjct: 1119 AQDYSRQNLEKTIGQYRYDLQYLLYTLALHR 1149


>gi|325144177|gb|EGC66484.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
            M01-240013]
          Length = 1204

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 131/940 (13%), Positives = 265/940 (28%), Gaps = 164/940 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L  YLN    E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGYDLNALEEAEEATIIRLQLDLIGYLNRSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +   ++R     + +     V       N 
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAESRLSPERPAVQVRWLHENDNE 527

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            +            ++      A   A  I+  +        N K   +Q+ DI VLVR  
Sbjct: 528  K----------ANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +++   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                   +               
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAE--------------SARTALDNW----NQYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  SGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN---- 672
                          +  D  K        E  RLLYV +TRA +QL I    +T+     
Sbjct: 796  LAKAQ---------LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTADNP 846

Query: 673  -----EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                 E              +   D      +    +  +      ++       P    
Sbjct: 847  LAYLIEGSPQDSRETVRRAYACEKDGIAMLKRNWRRVADNAPSGTNFAFTENAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  SNAGQTAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+          ++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +    + D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIE 894
             EV  + +  ++    +  ++G ID +       I I +YK++H             +  
Sbjct: 1083 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLGADASAYTQQAMDEA 1142

Query: 895  HIPYTHIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
               + +  Q  IY       +  +     ++    +++  
Sbjct: 1143 VTHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|315185499|gb|EFU19269.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 683

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 97/566 (17%), Positives = 169/566 (29%), Gaps = 121/566 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A YE+  +    +DF DLI+    LLK+ +    +R K+      +++DE QD+++ 
Sbjct: 166 ELYARYEDRLRDTGNVDFGDLILLPLRLLKEHED---VRRKVHAAFRVVMVDEYQDSNVA 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ ++R L                L  VGDE QSIY F GAE + +L      +      
Sbjct: 223 QFFLLRELYG----------PETYLCVVGDEDQSIYRFRGAEVRNILDFPDAFE------ 266

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I+ L  ++RST  IL     V +  E   G +         R  R G        
Sbjct: 267 --GTHIVRLETNYRSTETILRAASGVIAHNEGRLGKT--------LRPIRQGG------- 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                      E  A+  AR +                      
Sbjct: 310 ----------------DVIRILSFPSAEEEAAYWARFLREE------------------- 334

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D+ VL R    + L+            +           +   +KDL+A  R +L+ 
Sbjct: 335 GWEDVAVLYRAHYQSRLLELAL----AREGVPYRVVGSLRFYEREEVKDLLAFLRLVLNP 390

Query: 432 EDDLSFVCMLKSPLFNFSED-DIFKICTQRHETETVYEYIQK--FANCGISKFQHVIKYI 488
            D++SF+ ++  P            I   R    T+ E +++        +      +++
Sbjct: 391 RDEVSFLRVINKPPRGIGAKSQKAIISHARGTGSTLVEVLREGVVPGKAGASMVEFARFL 450

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS 545
             +           +   +L        +            + L E L            
Sbjct: 451 DHIGERLSRMDLASWMEDLLKESGLWDYYQGFDDYTARQKLENLQELLALARSY-PGGRD 509

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L   +  +       +     + + V ++T+H  KGLE   V +      VF       
Sbjct: 510 GLLAFLEYVALEGSLDR----GSGDGVVLITMHNTKGLEFSKVIITGLEEGVFPS----- 560

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                                  EE  RL YV +TRA D L + 
Sbjct: 561 ------------------------------WAASSPEDIEEERRLFYVALTRAKDGLFLS 590

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHN 691
                +   + + +     + +    
Sbjct: 591 WAQTRNIRGRRSFQQASRFLREIPPE 616


>gi|313668736|ref|YP_004049020.1| exodeoxyribonuclease V beta chain [Neisseria lactamica ST-640]
 gi|313006198|emb|CBN87660.1| putative exodeoxyribonuclease V beta chain [Neisseria lactamica
            020-06]
          Length = 1204

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 136/982 (13%), Positives = 285/982 (29%), Gaps = 167/982 (17%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
            +  +    L+Q + +  +    + L    L      +     ++       +  +L+K  
Sbjct: 271  SFAELFDALEQKALSTDLPFLEAKLHERLLKLSSD-KLEAGLKKGKTPDAAVFAELQKLA 329

Query: 105  DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
            D    + D     +        L L  YLN    E KK      F+DL+++ +  L    
Sbjct: 330  DFGRDL-DALEEAEEATMIRLQLDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNP 388

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             +  +   + +     LIDE QDT  +Q+E+ + +           +  R LF VGD KQ
Sbjct: 389  HAEILARAVAENWETALIDEFQDTDPLQYEIFQKIF---------IAQNRPLFLVGDPKQ 439

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            +IYSF GA+    L+           AG       L  ++RS + ++  +  +F + E  
Sbjct: 440  AIYSFRGADIYAYLQ----------AAGDAQHRYTLATNYRSHSALIGSIGALFRLKERP 489

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL--PQESSA 342
              L     + +   ++R              S+   +    Q  W    D+    ++   
Sbjct: 490  FVLENIGYSEV--GAARAE------------SRLSPERPAVQVRWLHENDNEKTNKDVLR 535

Query: 343  SILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               A   A  I+  +        N K   +Q+ DI VLVR   +  +++   +      +
Sbjct: 536  RRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVRTHNEAVMVSAALK----KRQ 591

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            +  V   R  +        L AL  F L      +   +L S +F +    +        
Sbjct: 592  VQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYDAQQLHDFNQNES 651

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            E     E                   +                           + +SR 
Sbjct: 652  EILHWAE--------------SARNALDNW----NQYGIFAAMQQFSQTHGIETRLLSRN 693

Query: 522  GNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRI 574
                +    + L        +  + ++L + + +                  ++ + V+I
Sbjct: 694  NGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIRLESDEDLVKI 753

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            +T+H +KGL+ P+V+         +     ++    +   +               +  D
Sbjct: 754  VTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ---------LSED 804

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY-------- 686
              K        E  RLLYV +TRA +QL I    ++             +          
Sbjct: 805  EQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDSRETVRQ 864

Query: 687  -DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE------------------ 727
                  D      +    +  +     +++       P                      
Sbjct: 865  IYDREKDGIAMLKRNWQRLTDNAPSGTDFAFTEDAPPPAAYRGNAGQTAEFAANSIPERR 924

Query: 728  ---------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                       + +        ++   P  +         PS  +T   ++  S+    +
Sbjct: 925  FRFVRHTSFTALSRQSQTPDDGEEDACPSLDAAETSVPAMPS--ETPTASDGISIHDFPK 982

Query: 779  TFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-- 835
                GL +H++L+          ++  IT    K    +       +        + P  
Sbjct: 983  GTQAGLCLHEILEDFKFGQAAAGQETLITDKLKKYG--FEEIWLPAVAEMAEACRKTPLT 1040

Query: 836  -----------------------------MMTTAMSCDS--YSEV--SVSGKINCPKKDI 862
                                          +    + D     EV  + +  ++    + 
Sbjct: 1041 GAYCLSDIPPEYRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNG 1100

Query: 863  IISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILK 912
             ++G +D I       I + +YK++H             +     + +  Q  IY     
Sbjct: 1101 FLNGFVDMICQDPDGNICVIDYKSNHLGTDASAYTRQAMDEAVAHHHYYLQALIYAVAAA 1160

Query: 913  DSYPNK-----SLVCLLIYVSE 929
              +  +     ++    +++  
Sbjct: 1161 RYFKLRGQPPAAVSVRYLFLRG 1182


>gi|331089316|ref|ZP_08338217.1| hypothetical protein HMPREF1025_01800 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405497|gb|EGG85029.1| hypothetical protein HMPREF1025_01800 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 608

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 107/562 (19%), Positives = 179/562 (31%), Gaps = 120/562 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   YE  +K    LDF+D+++   DL         +  +   +  +IL+DE QD + 
Sbjct: 161 RELYEKYEAQRKAVRKLDFDDMLVLCKDLFVSHPD---VLKQWQTKFKYILVDEFQDINR 217

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++VIR L                LF VGD+ Q+IY F GA+ + + R      +    
Sbjct: 218 VQYDVIRMLAL----------PENNLFVVGDDDQAIYGFRGADSEFMFRFSEDYPQ---- 263

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L +++RS+ +I+    KV    E        S                V +
Sbjct: 264 ----AKRIILNINYRSSGNIVKNSMKVIGHNEKRFLKEFQSV---------KENGFCVHV 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            E      +                          A+ +A  I                 
Sbjct: 311 QEVKDPNEE--------------------------AQYVADEIEKRAELG---------- 334

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFIL 429
           I  +++ VL R   D   +       K    I     +R   L DH   KD+ A  R  L
Sbjct: 335 ISYEEMAVLFRIHTDARPVAEEFLERK----IPFQMKERLPNLYDHFIAKDICAYFRLAL 390

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              +    + ++  P      D +        E         +   C        I    
Sbjct: 391 GNIERNDLLQVMNRPKRYIGRDSVASGKPSFEE--------MRKFYCDKEWMLDRIDQFE 442

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSSL 547
             + + +  +P+     I                  ID   L+E L       +  ++++
Sbjct: 443 WDVKMLRKTAPYAGINYIRKRIGYDDFLKDYAFTRKIDRANLNEVLAELEEAAR-PFATI 501

Query: 548 QELISELEQYPPTIK---RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +E    +E+Y   ++        +   VR+MT+H+AKGLE   VFLV+            
Sbjct: 502 EEWFRHIEEYTRLLRLKSMKRQEDREGVRLMTLHSAKGLEFDTVFLVEANEGKMP----- 556

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                           K    +  EE  RL YVGMTRA + L  
Sbjct: 557 ------------------------------YKKAKTDAETEEERRLFYVGMTRAKEVLKA 586

Query: 665 CKHSNTSNEKKSNQRTWYDMVY 686
                 + ++ S  R   +++ 
Sbjct: 587 SYVKTKNGKETSPSRFVDELLE 608


>gi|194098105|ref|YP_002001153.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945]
 gi|193933395|gb|ACF29219.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945]
          Length = 1200

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 129/936 (13%), Positives = 265/936 (28%), Gaps = 160/936 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L +YLN+   E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNSSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +      + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETPARAVAENWEIALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IARNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +    +           +      +     
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKA 529

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
             ++                  A   A  I+  +        N K R +Q+ DI VLVR  
Sbjct: 530  NKDVL------------RRRAADYCADEIAHALNEASGGRLNFKGRPLQSGDIAVLVRTH 577

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +  +I+   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578  NEAVMISAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +F +    +        E     E                       + I Q       
Sbjct: 634  GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDIWQKYGIFAA 675

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                        + +SR     +    + L        +  + ++L + + +        
Sbjct: 676  MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRAEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +     K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSESEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +     +++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRTYACEKDGITMLKRNWRRVADNAPAGTDFAFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  GNADQAAEFAANSIPERGFRFVRHTSFTALSRQTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAK 819
              +T   ++  S+    +    GL +H++L+         +++  I     K    +   
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYG--FEEI 1022

Query: 820  EYKNLLLSITRLLENP-------------------------------MMTTAMSCDS--Y 846
                +        + P                                +   ++ D    
Sbjct: 1023 WLPAVAEMAEACRKTPLTGAYGLSDIPPGCRRPEMGFTLHTEDFGLKRLRDWLARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY----- 898
             EV  + +  ++    +  ++G ID +       I I +YK++H      + +       
Sbjct: 1083 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLSAYTRQAMDEAVAHQ 1142

Query: 899  THIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             +  Q  IY       +  +     ++    +++  
Sbjct: 1143 HYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1178


>gi|257791534|ref|YP_003182140.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
 gi|257475431|gb|ACV55751.1| UvrD/REP helicase [Eggerthella lenta DSM 2243]
          Length = 753

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 105/767 (13%), Positives = 224/767 (29%), Gaps = 134/767 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    I +         ++  + +    ++     +        ++       +  +
Sbjct: 99  AAGEMRRRIRRLTGDNDTGYINTFHGFCVSVLQEDGHALQ-----YPKSFLVLDNADIDA 153

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           +L   +  +  T +    ++  +        ++ K ++     RD               
Sbjct: 154 MLQVIYEERGLTLRDMTFSKARD------MIEIMKLKERPGYYRDMLAMPLEGLRQKYLD 207

Query: 128 TLAKY---LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                      +  + KK    LD+ DLI+    L ++      IR K  + + +I++DE
Sbjct: 208 ATDARDIIFYGYLYQEKKCFG-LDYNDLIVFVLYLFEQNPD---IRLKWQKRLEYIMVDE 263

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD   +Q E++  L              + LF VGD  Q+IY++ GA+ + +L   +  
Sbjct: 264 FQDIDGLQHELMEVLAGY----------HKNLFVVGDPDQTIYTWRGADVRYLLDFDKRF 313

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        + +  ++RS   ++ V + +                  R  + R   
Sbjct: 314 P--------GTRTVMMLENYRSAPRVVAVANSLIEKNRER--------VPKRLAAMRSVH 357

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             TV    +                                A  IA     + G      
Sbjct: 358 GPTVWRHAKSPDGE---------------------------AAWIAQGALALHGEG---- 386

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 +  +D+ VL R    +  +           ++               IKD ++ 
Sbjct: 387 ------VAYRDMAVLYRAHYASRPVEEAL----LRAEVPHAVYSGVPFFGRREIKDALSY 436

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCG---ISK 480
            R +   +DDL F  +  +P  N     +  +  +  E   +++E +++F +      +K
Sbjct: 437 LRLVA-YQDDLDFARVANAPKRNLGARRMAFLREKADELGCSLFEALERFVDDDLFKRTK 495

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            + +++ +       +     +    +L      +   +    E +D L E        E
Sbjct: 496 ARQLLQLVDRFRSSYEGRPVSEVLAAVLSESGYERALRTEGSQERLDNLAELKQSVYEFE 555

Query: 541 QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L   L                ++VR+MTVH AKGLE   VFL      V  
Sbjct: 556 TTCGEEVT-LEHYLAHTALLTNADAMDDAQDKVRLMTVHAAKGLEFAHVFLCSMTEGVLP 614

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                K       EE  RL +V MTRA 
Sbjct: 615 S-----------------------------------RKTDTPQGMEEERRLAFVAMTRAR 639

Query: 660 DQLIICKHSNTSNEKKSNQRTWY-------DMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           D L + +     +E      + +        + + +   +  +   +   ++        
Sbjct: 640 DGLYLTEAEGRGHEGAPRYPSRFLLDIDPAALEFSNKPAERELDDARAAYALADRWIADL 699

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                      +         +      K+ +    +D++ P  ++ 
Sbjct: 700 VRDARFAVGDRVTHAAFGSGRVLAVDSQKRAYEVAFDDLDTPRTISF 746


>gi|326571084|gb|EGE21108.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis BC7]
          Length = 1315

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 151/1017 (14%), Positives = 302/1017 (29%), Gaps = 158/1017 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +    +            K+    +IN+      + L    + ++ + ++ N Y   
Sbjct: 328  DALKLIDAIIKAMDKDWQIFNKSANPSDINQFLALPLQALSDIANVYLTLSEQTNLYHTH 387

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                  L+    +    E     +    F   ++  N+ L+       +  +I       
Sbjct: 388  ICRHIILSAKSQIAQRLET----HGQTTFTLQMVRLNEALRNSPA---LARQIRHHYPVA 440

Query: 181  LIDEVQDTSLIQWEVIRS-------------LTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            LIDE QD + +Q E+I               +  +   G+        L  VGD KQ+IY
Sbjct: 441  LIDESQDINGLQVELIELVYLNEIANYHKNLIRYEQIGGEKPKLPRGFLLLVGDPKQAIY 500

Query: 228  SFHGAEPKRVLREKRI-NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQ 285
             F G +       K   NQ     A      + L ++ RS+  ++  ++  F    ++A 
Sbjct: 501  RFRGGDVTNYNLIKHYGNQDLLIKAPLMNQSLSLTVNRRSSKALIEALNAWFDNNHQDAV 560

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                +    I ++  +  + G    W+           P       +FD +     A+  
Sbjct: 561  ANHANLGQGIFYQQIQAHKDGGGIHWQSDAYADYYGKYPIAV---LHFDHIEAGQKAAQR 617

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +IA  I+ ++  D        + I  KDI VL R       I      L     I  +
Sbjct: 618  AEQIARHINTILQGDHTLHG---QKILPKDIAVLGRTADTLDRIKSELDQL----NIPAI 670

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                  +    A  DL+AL   IL      +    L S L   +      I     +   
Sbjct: 671  IPKEMNIFITQAADDLLALIGAILQPNHSENLGKFLVSSLVGMTLKQAINIIEPNDQ--- 727

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-------I 518
              + +    +   +   H++ Y+ +     Q           L                 
Sbjct: 728  --QALDNDLSETQNLKTHLLAYLKKSYEKWQKFGVSSALAYALHHSPIDYDDDKSPWLKA 785

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMT 576
            +  G   +  L+  +       Q     +     +                + + V +MT
Sbjct: 786  ATQGERYLVDLERLVALVSEQSQLHEMRIIAWYHKQMNADVDSHNKRPILPSESGVNLMT 845

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P+V+++    +  +      + I P  N +    + + Q    +       
Sbjct: 846  IHKSKGLEFPIVYVIGMDEKPKNEN---GLTIYPYTNHNFQRCLSLSQGNLIDENY--YY 900

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN----D 692
               ++   +E  RL YV +TRAS+QL I       ++K S +   Y  +  +        
Sbjct: 901  HINQQELIDEIRRLGYVALTRASEQLYIVG--GDLSKKTSKEMPLYQWLDCAGEKILSLP 958

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +R+K       + + +  +  + T  P  +          +   Q   +   S       
Sbjct: 959  DRLKGWVDWIDLTEADLFSQPYQTKLPNLSAKHYAPWDMVMTKTQFFGEYKTSFSALITR 1018

Query: 753  EPY-ILNPSTIDTKGKTNLESLLSDN----------QTFNRGLIIHKLLQVIFT------ 795
                 ++P   D    + L  + + +          +    G  +HK++Q + T      
Sbjct: 1019 LDKSAISPDEADIDQLSVLTDMAASDQFDDIRTSFFKGSLAGDFLHKVMQFLPTDRLALA 1078

Query: 796  -------------LPEHKRKNFITSYC-TKNAKLWP---------AKEYKNLLLSITRLL 832
                           + ++      Y  T+ A+            A ++  L+  I +L 
Sbjct: 1079 SLHDAHRIISGVIYEQGRKLGIAERYLPTRPAQQIGTRINSNEHQADDHTKLVAWIYQLA 1138

Query: 833  ENP---------------------------------MMTTAMSCDSYSEVSVSGKINCPK 859
              P                                  +       S  ++ +        
Sbjct: 1139 YAPFRASHRSLMSLPMTVQLRELSFTLGLGDTFSITRLNEVFKAHSDKDLVLLDDDYHTM 1198

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKI 910
            +   + G ID +    +  FI +YK+++      E+             +  Q +IY+  
Sbjct: 1199 RYRYLRGEIDLVYECDRRFFIVDYKSNYLGSTPDEYHDHAMAAVMDKVGYWLQAAIYQVA 1258

Query: 911  LKDSYPNK------SLVCLL-----IYVS--------EPKVFIIPQNKLNKAFAEIS 948
            L      +      +    L     +++            +   P   L  A  EI 
Sbjct: 1259 LHRLLKIRLKDYVGNEAAYLGAVEYVFLRGVQEGNEKTGHLCWQPPLSLILALDEIL 1315


>gi|229160287|ref|ZP_04288286.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus R309803]
 gi|228623248|gb|EEK80075.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus R309803]
          Length = 688

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 208/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   ++            S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNRAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NFKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|78358610|ref|YP_390059.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221015|gb|ABB40364.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 719

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 111/740 (15%), Positives = 221/740 (29%), Gaps = 127/740 (17%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
           K    + +     + +   +       T    A ++ +  + Q  E   S++ S      
Sbjct: 62  KAAQEMQHRAAQLLGQSAGMVGGVQGGTFHAFAYSILRMHKPQGYEGDLSVMDSADAAGA 121

Query: 78  FT-PQKNIITQEINKKSPDLKEKLKKS-QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               +  +   + ++  P  +  +    +    ++       +      +       ++ 
Sbjct: 122 LKHCKDTLGLGKGDRSFPKTQTVMGLLSKARNKELTVEDVLRREAFHLASYAGDLTRISD 181

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y   K+++ ++D++DL+     LL+     A +         +I++DE QDT+L+Q  +
Sbjct: 182 TYRAFKRRHALMDYDDLLFELERLLQSD---ADLLAYYRDRFRYIMVDEFQDTNLVQARL 238

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           +R L           S    + AVGD+ QSIY+F GA  + +L    +            
Sbjct: 239 VRLL----------GSGHNNVMAVGDDAQSIYAFRGANVQNILDFPDMFP--------GT 280

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            II+L  ++RS   +L + + +      A           +  + R G      L     
Sbjct: 281 RIIKLEENYRSVQPVLDLTNAILDDAPQAFRK--------KLFTRREGGPTPHVLRPL-- 330

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                                    S    A  +   I+ ++           R     +
Sbjct: 331 -------------------------SDLTQASMVTSKITELL-----------RTYPPDE 354

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           I VL R    +  +            +          +D   +KD+++  R +++  D  
Sbjct: 355 IAVLFRAGYQSYHVEMQL----GKLGVKFKKYGGVRYSDAAHVKDVLSYIRLVVNPLDLP 410

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           +F   + S +         K+     + +     + K A       QH +  +  L   A
Sbjct: 411 AFQR-MASLVKGIGAKTCLKLYDAAQKADR---SVLKKACARFPDLQHDLDMLDALR--A 464

Query: 496 QFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           +  +P      ++   + R +             L++ +             L +L    
Sbjct: 465 KPLTPAGLTQAVIEHYQPRLEANYPDDYPRRQHGLEQLVQIAASYNDVDLM-LSDLCL-- 521

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        + + V + TVH+AKGLE   V L+D     F  +H            
Sbjct: 522 ----EDPATDKGEDISAVTLSTVHSAKGLEWSAVLLIDLVEDRFPSRHALN--------- 568

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS------ 668
                                    K    EE  RL+YV  TRA D L +   +      
Sbjct: 569 -------------------------KAEDFEEERRLMYVACTRARDYLALFVPATIYDRS 603

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
              N   +      D+    + +        LT   +          T  P +    + E
Sbjct: 604 GGGNTPANPSPFVRDLPAHLYEDWRENFTGTLTRRQDARPVTVSAARTSGPASGGGRQAE 663

Query: 729 TIKQLMDEQKIPKKLFSPIK 748
                +     P   +   K
Sbjct: 664 QGGGALGNGGRPASGYCTHK 683


>gi|326575729|gb|EGE25652.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis CO72]
          Length = 1315

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 151/1017 (14%), Positives = 302/1017 (29%), Gaps = 158/1017 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +    +            K+    +IN+      + L    + ++ + ++ N Y   
Sbjct: 328  DALKLIDAIIKAMDKDWQIFNKSANPSDINQFLALPLQALSDIANVYLTLSEQTNLYHTH 387

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                  L+    +    E     +    F   ++  N+ L+       +  +I       
Sbjct: 388  ICRHIILSAKSQIAQRLET----HGQTTFTLQMVRLNEALRNSPA---LARQIRHHYPVA 440

Query: 181  LIDEVQDTSLIQWEVIRS-------------LTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            LIDE QD + +Q E+I               +  +   G+        L  VGD KQ+IY
Sbjct: 441  LIDESQDINGLQVELIELVYLNEIANYHKNLIRYEQIGGEKPKLPRGFLLLVGDPKQAIY 500

Query: 228  SFHGAEPKRVLREKRI-NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQ 285
             F G +       K   NQ     A      + L ++ RS+  ++  ++  F    ++A 
Sbjct: 501  RFRGGDVTNYNLIKHYGNQDLLIKAPLMNQSLSLTVNRRSSKALIEALNAWFDNNHQDAV 560

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                +    I ++  +  + G    W+           P       +FD +     A+  
Sbjct: 561  ANHANLGQGIFYQQIQAHKDGGGIHWQSDAYADYYGKYPIAV---LHFDHIEAGQKAAQR 617

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +IA  I+ ++  D        + I  KDI VL R       I      L     I  +
Sbjct: 618  AEQIARHINTILQGDHTLHG---QKILPKDIAVLGRTADTLDRIKSELDQL----NIPAI 670

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                  +    A  DL+AL   IL      +    L S L   +      I     +   
Sbjct: 671  IPKEMNIFITQAADDLLALIGAILQPNHSENLGKFLVSSLVGMTLKQAINIIEPNDQ--- 727

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-------I 518
              + +    +   +   H++ Y+ +     Q           L                 
Sbjct: 728  --QALDNDLSETQNLKTHLLAYLKKSYEKWQKFGVSSALAYALHHSPIDYDDDKSPWLKA 785

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMT 576
            +  G   +  L+  +       Q     +     +                + + V +MT
Sbjct: 786  ATQGERYLVDLERLVALVSEQSQLHEMRIIAWYHKQMNADVDSHNKRPILPSESGVNLMT 845

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P+V+++    +  +      + I P  N +    + + Q    +       
Sbjct: 846  IHKSKGLEFPIVYVIGMDEKPKNEN---GLTIYPYTNHNFQRCLSLSQGNLIDENY--YY 900

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN----D 692
               ++   +E  RL YV +TRAS+QL I       ++K S +   Y  +  +        
Sbjct: 901  HINQQELIDEIRRLGYVALTRASEQLYIVG--GDLSKKTSKEMPLYQWLDCAGEKILSLP 958

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +R+K       + + +  +  + T  P  +          +   Q   +   S       
Sbjct: 959  DRLKGWVDWIDLTEADLFSQPYQTKLPNLSAKHYAPWDMVMTKTQFFGEYKTSFSALITR 1018

Query: 753  EPY-ILNPSTIDTKGKTNLESLLSDN----------QTFNRGLIIHKLLQVIFT------ 795
                 ++P   D    + L  + + +          +    G  +HK++Q + T      
Sbjct: 1019 LDKSAISPDEADIDQLSVLTDMAASDQFDDIRTSFFKGSLAGDFLHKVMQFLPTDRLALA 1078

Query: 796  -------------LPEHKRKNFITSYC-TKNAKLWP---------AKEYKNLLLSITRLL 832
                           + ++      Y  T+ A+            A ++  L+  I +L 
Sbjct: 1079 SLHDAHRIISGVIYEQGRKLGIAERYLPTRPAQQIGTRINSNEHQADDHTKLVAWIYQLA 1138

Query: 833  ENP---------------------------------MMTTAMSCDSYSEVSVSGKINCPK 859
              P                                  +       S  ++ +        
Sbjct: 1139 YAPFRASHRSLMSLPMTVQLRELSFTLGLGDTFSITRLNAVFKAHSDKDLVLLDDDYHTM 1198

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKI 910
            +   + G ID +    +  FI +YK+++      E+             +  Q +IY+  
Sbjct: 1199 RYRYLRGEIDLVYECDRRFFIVDYKSNYLGSTPDEYHDHAMAAVMDKVGYWLQAAIYQVA 1258

Query: 911  LKDSYPNK------SLVCLL-----IYVS--------EPKVFIIPQNKLNKAFAEIS 948
            L      +      +    L     +++            +   P   L  A  EI 
Sbjct: 1259 LHRLLKIRLKDYVGNEAAYLGAVEYVFLRGVQEGNEKTGHLCWQPPLSLILALDEIL 1315


>gi|213965852|ref|ZP_03394043.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
 gi|213951430|gb|EEB62821.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
          Length = 1164

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 121/948 (12%), Positives = 244/948 (25%), Gaps = 174/948 (18%)

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L         +  V  F   +     L       A +  +  +   +I++DE QDTS  
Sbjct: 237  PLVEQVRARCNEENVATFGMQMARAARLATD---FAEVGEEERRRFKNIMLDEYQDTSHT 293

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q   +R+L                + AVGD  Q+IY + GA  + +++      +   + 
Sbjct: 294  QRLFLRALFS-----------GGCVTAVGDPMQAIYGWRGATAENLVQFVNDFPR---SD 339

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            GQ     +L +S+R+   +L + + V          +  + T     +      G VQL 
Sbjct: 340  GQPAEKKQLTISWRNPQSVLQLANAVSDRA-----FAGQARTVEALDAGPKAGQGEVQLA 394

Query: 312  EQVVSQHD-----SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSN 365
                 + +          Q     +  + L         A   A  +  +          
Sbjct: 395  FTATGEEEVAYIADCMEAQLRECEAAGNKLDAAILVRTNAES-AVYLDALSERGVPAIIV 453

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL- 424
            G   ++   +++ +    K     +     L+             +      +  L    
Sbjct: 454  GLAGLLHLPEVMDITSAMKILVDPSSDQDALRLLLSPQFNLGAADVEALRTRVDQLAMAG 513

Query: 425  -------------------GRFILSQEDDLSFVCMLKSPLFNFSED-----------DIF 454
                                  +  Q D L       S                      
Sbjct: 514  KDELARKMGNVEETSDSSPLSQLARQYDKLVEDAEAASSAVGLGHAIADPDIRFYDGTPL 573

Query: 455  KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
               +       V      + +  + +   +   + +L   +      +    I      R
Sbjct: 574  ARGSVEKNGRLVCSESLNYTDEAMVRIAQLGASLRKLRRFSLNKPLPELVEDIATEFGIR 633

Query: 515  QQFISRFGNEVID-------VLDEFLNFTLRNEQNSYSSLQELISELE----QYPPTIKR 563
             +  +                LD F++      QN    +   ++ LE          + 
Sbjct: 634  VEAAAGQYGSATAITRPTTAHLDRFVDIAATYSQNISDDVTGFLNYLEFAVEHDDGLERA 693

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH---------------- 607
              +   N V+IMT+H +KGLE   V +    +  F    +                    
Sbjct: 694  PMNMPENCVQIMTMHKSKGLEWETVAVPGITTSKFDKVDLSSWLTNSVQLPPGAITQVDP 753

Query: 608  -----------------------IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
                                        N               N ++    + L++  +
Sbjct: 754  LTASAEPTEDATRLAAGDWAPVADSVDSNAPELDISGADNQTDLNKVIKAYKEELREVER 813

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-----------VYDSFHNDE 693
            EE  RL YV MTR++ +LI+      +   K       D            V  +   D 
Sbjct: 814  EEKQRLFYVAMTRSAKKLIVTASRRPNPSLKHPTDVSADFGAIATQFSDYVVSWTDGEDP 873

Query: 694  RVKKIKLT---------------------NSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             V+  ++                      +S+ +       +     +  P+  + +   
Sbjct: 874  EVEDTEVDLDCDTAVDGVVWPVDTLGNRRDSVQRAAESVMRYMGEDQDERPIAGDLSEVW 933

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTID----------TKGKTNLESLLSDNQTFNR 782
              +   +  ++      +I+ P   + ST +             +         N+   R
Sbjct: 934  ETETTILVDEILRAKAAEIHLPMPTSMSTSEYQAMIADPVAFARRKARPVPFKPNRFARR 993

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            G   H  L+  F            S            +       +    E   +     
Sbjct: 994  GTAFHAWLENRFG---------AHSLLDDEDLFGDQLDDFLGTEQVASERELEKLKANFE 1044

Query: 843  CDSYSEV---SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
               +++     V            + GRID +        + ++KT      +   +   
Sbjct: 1045 ASEWADRTPTHVEVPFEIAIGQRRVVGRIDAVFNDNGKWSVTDWKTGQMPRGKEREVA-- 1102

Query: 900  HIAQLSIYEKILKDSYPN-------KSLVCLLIYVSEPKVFIIPQNKL 940
               QL+IY     D           + +     YVS  +  I  +  L
Sbjct: 1103 -ALQLAIYRLAWSDRLREMGMETAPEEIEAGFFYVSAGRTLIPDEALL 1149


>gi|311029838|ref|ZP_07707928.1| ATP-dependent DNA helicase [Bacillus sp. m3-13]
          Length = 628

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 104/628 (16%), Positives = 201/628 (32%), Gaps = 115/628 (18%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLA 125
              +   L +    ++  + Q   K   D K+    ++  +    ++   T K  K T  
Sbjct: 107 ERWNGDNLLKWDWQKEQFLKQAGRKLGLDEKDFPFDQAIQQIGYWKNNMQTPKGIKPTSK 166

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                K L   YE+ K++  V DF+D+++   +LL +      +  K  +   + LIDE 
Sbjct: 167 LEEQFKSLYQDYEDWKREKNVFDFDDMLLGCYELLMENPA---LLAKYQERFQYFLIDEF 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +Q+E ++ L +              + AVGD+ QSIY+F G+ P  +L   R   
Sbjct: 224 QDINKVQYETMKLLAQ-----------SGNICAVGDDDQSIYAFRGSSPDYILNFHRDFP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      ++ L  ++RST  I+   ++V    +N +     +    +H        
Sbjct: 273 --------STQVVTLSENYRSTHTIVAAANQVIDKNKNRRVKKMIAQRDNKHFP------ 318

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                      +D   +       A  I   +   I        
Sbjct: 319 ----------------------VLFYPYDEEEE-------ATIIVQDMKEQIEQG----- 344

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKDLMAL 424
                    D  VL R       I        +   +      D         +K ++  
Sbjct: 345 -----ATPNDFAVLYRTHSAARAIFERL----SQSGLPFKLDQDYESFYKRRIVKGILGF 395

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQH 483
            R      D  +   +L  P     + ++         E  ++ + + K  N    + + 
Sbjct: 396 LRLSRDSNDVQALADIL--PALFLKQSNLQDAKAISILEDCSLVKSLSKLTNVQPFQVKK 453

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI------DVLDEFLNFTL 537
           + + I     +A           ++    G   +I + GNE        D + +      
Sbjct: 454 INRIIPLFKTLANVSPSVAL--EMIEKDMGFDDYIKKRGNEGNALEKGSDDIRDLKVVAR 511

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           +    + +   + + ++      +KR      N + + T+H +KGLE   V+++      
Sbjct: 512 KF--KTITEFLDHVEDMIAKTDEMKRLSKQYSNAIHLSTIHRSKGLEYTNVYVLSAVDGS 569

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H                                 +  ++ +    EE  RLLYV MTR
Sbjct: 570 LPHDFAL-----------------------------ESYRNGELGALEEERRLLYVAMTR 600

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMV 685
           A + L +    N   +K    R   D++
Sbjct: 601 AKETLQLSVPMNRRGKKAYMTRFIKDIL 628


>gi|307719793|ref|YP_003875325.1| DNA helicase [Spirochaeta thermophila DSM 6192]
 gi|306533518|gb|ADN03052.1| DNA helicase [Spirochaeta thermophila DSM 6192]
          Length = 683

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 98/566 (17%), Positives = 170/566 (30%), Gaps = 121/566 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L A YE+  +    +DF DLI+    LLK+ +    +R K+      +++DE QD+++ 
Sbjct: 166 ELYARYEDRLRDTGNVDFGDLILLPLRLLKEHED---VRRKVHAAFRVVMVDEYQDSNVA 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ ++R L                L  VGDE QSIY F GAE + +L      +      
Sbjct: 223 QFFLLRELYG----------PETYLCVVGDEDQSIYRFRGAEVRNILDFPDAFE------ 266

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I+ L  ++RSTA IL     V +  E   G +         R  R G        
Sbjct: 267 --GTHIVRLETNYRSTATILRAASGVIAHNEGRLGKT--------LRPIRQGG------- 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                      E  A+  AR +                      
Sbjct: 310 ----------------DVIRILSFPSAEEEAAYWARFLREE------------------- 334

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D+ VL R    + L+            +           +   +KDL+A  R +L+ 
Sbjct: 335 GWEDVAVLYRAHYQSRLLELAL----AREGVPYRVVGSLRFYEREEVKDLLAFLRLVLNP 390

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK--FANCGISKFQHVIKYI 488
            D++SF+ ++  P           I    R    T+ E +++        +      +++
Sbjct: 391 RDEVSFLRVINKPPRGIGAKSQEAIISHARGTGSTLVEVLREGVVPGKAGASMVEFARFL 450

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS 545
             +           +   +L        +            + L E L            
Sbjct: 451 DHIGERLSRMDLASWMEDLLKESGLWDYYQGFDDYTARQKLENLQELLALARSY-PGGRD 509

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L   +  +       +     + + V ++T+H  KGLE   V +      VF       
Sbjct: 510 GLLAFLEYVALEGSLDR----GSGDGVVLITMHNTKGLEFSKVIITGLEEGVFPS----- 560

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                                  EE  RL YV +TRA D L + 
Sbjct: 561 ------------------------------WAASSPEDIEEERRLFYVALTRAKDGLFLS 590

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHN 691
                +   + + +     + +    
Sbjct: 591 WAQTRNIRGRRSFQQASRFLREIPPE 616


>gi|229101910|ref|ZP_04232624.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-28]
 gi|228681493|gb|EEL35656.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-28]
          Length = 688

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 207/658 (31%), Gaps = 125/658 (18%)

Query: 47  LKKAQTLQQASQTQCIEERFS-------LLSSFFLTQ-----------KFTPQKNIITQE 88
            K A+ ++          R +          S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVANLPGMNRAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+         ++    I +     N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDGYDAETMLAMISLEKNNLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  I+ ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIRPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|325264991|ref|ZP_08131718.1| putative ATP-dependent helicase PcrA [Clostridium sp. D5]
 gi|324029681|gb|EGB90969.1| putative ATP-dependent helicase PcrA [Clostridium sp. D5]
          Length = 612

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 112/603 (18%), Positives = 206/603 (34%), Gaps = 128/603 (21%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           D ++ L++   E   +++     + ++ST  +    + +   YE  +K    +DF+D+++
Sbjct: 125 DEEDFLQEIVTEIGVVKNNRIEIEEYRSTKCAPDAFRNIYREYETQRKSAKKIDFDDMLV 184

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
              +L +       I      + ++ILIDE QD + IQ++VI+ L E            R
Sbjct: 185 LCYELFRS---RPDILKMWQDKFHYILIDEFQDINQIQYDVIKMLAE----------PQR 231

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            LFAVGD+ QSIY F GA+ K + +                  + L +++RST++I+   
Sbjct: 232 NLFAVGDDDQSIYGFRGADSKLMFQFTEDYP--------GVKQLLLDINYRSTSNIVENA 283

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            KV    E                  R  +     L  Q V     +             
Sbjct: 284 LKVIGHNEIRFQKK-----------IRSQKPRGASLHVQEVRDPTEEGG----------- 321

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                         +   I + I             ++ +DI VL R   D   +     
Sbjct: 322 -------------YVLEEIKSRIQAG----------VKPEDIAVLFRIHTDARPLVEQL- 357

Query: 395 FLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
               ++KIS    +    +  H   KD+MA  R          F+ ++  P    S + +
Sbjct: 358 ---IEHKISFQMKEHMPNIYSHFIAKDMMAYFRMASGSRARQEFLQIMNRPKRYISRESL 414

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
                   +         +   C     Q  I      + +    +P+     +      
Sbjct: 415 SGREASFED--------LRKFYCDKEWMQDRIDQFEWDLKMLIKMAPYAAIQYLRKRIGY 466

Query: 514 ---RQQFISRFGNEV---IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
               +++ +    +     +V+ E             S+L++    +E+Y   ++   S+
Sbjct: 467 DDFLREYAASRKMQAGDLFEVMAELEEAAKPF-----STLEQWFGHVEEYTNALRIRESS 521

Query: 568 NH---NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                + VR+MT+H AKGLE   V++++                                
Sbjct: 522 RERQQDGVRLMTMHAAKGLEFDSVYIIEANEGQIP------------------------- 556

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                       K LK+   EE  RL YV MTRA + L I      + +  S  R   ++
Sbjct: 557 ----------YKKALKEHGIEEERRLFYVAMTRAKELLKIVYVKKKNGKDVSPSRFVEEL 606

Query: 685 VYD 687
           + +
Sbjct: 607 LEN 609


>gi|225552190|ref|ZP_03773130.1| DNA helicase [Borrelia sp. SV1]
 gi|225371188|gb|EEH00618.1| DNA helicase [Borrelia sp. SV1]
          Length = 698

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 93/544 (17%), Positives = 169/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFDNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +  +   R             
Sbjct: 270 -----KFYLVQNYRSNSNIVGIANEVISKNKNRYEKQITTQNSSNKRMKF---------- 314

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                      + +       I+  I                  
Sbjct: 315 --------------------LVFQSTSDEAEYFSNLLISNDIQT---------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D +SF+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLGKIISSLNDEDVNFNLFCASKKTLGLLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +V   + + +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYDELGKKLFEDNYINLSTFIEDVVIRFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   +     N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGDFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|312149762|gb|ADQ29833.1| DNA helicase [Borrelia burgdorferi N40]
          Length = 698

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 93/544 (17%), Positives = 170/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFDNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +  +   R             
Sbjct: 270 -----KFYLVQNYRSNSNIVGIANEVISKNKNRYEKQITTQNSSNKRMKF---------- 314

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                      + +       I+  I                  
Sbjct: 315 --------------------LVFQSTSDEAEYFSNLLISNDIKT---------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D +SF+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLDKIISSLNDEDVNFNLFCASKKALGLLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +V   + + +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYDELGKKLFEDNYINLSTFIEDVVIRFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   + +   N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGNFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|300854835|ref|YP_003779819.1| putative ATP-dependent DNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300434950|gb|ADK14717.1| predicted ATP-dependent DNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 737

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 100/582 (17%), Positives = 202/582 (34%), Gaps = 127/582 (21%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLT------LAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +   ++ +  +  K  ++ +          +       YE  K +N ++DF+DL +   D
Sbjct: 190 ERVKEVLNDISLLKNSETNIDLFKSKIDKSVFLKCFNEYENYKARNKLMDFDDLQLKVKD 249

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           +         I         +IL+DE QD+  +Q E+++ +            S   +FA
Sbjct: 250 MFLN---QKSILDSYQNLFKYILVDEFQDSDNLQIELLQLI-----------GSKGVIFA 295

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGDE Q IYSF G++P+ ++              +    I L +++RS  +++ +  K+ 
Sbjct: 296 VGDEDQCIYSFRGSKPECMVNFDNYF--------KDGRKIYLKINYRSVKNVVELSKKII 347

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
              +N                                   ++        +   F+   +
Sbjct: 348 CNNKNRNVKLI-----------------------------ENNRKNDGNIYFKVFEREKE 378

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
           +      A  ++ +I  +I              +   I V  R   ++  I         
Sbjct: 379 Q------AFFVSNSIKEIINKG---------KYKYSHIAVFYRTNLESRSIIDAF----L 419

Query: 399 DYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            Y I     D      +H   KDL+A  +  ++  D  SF+ ++  P     + +I K+ 
Sbjct: 420 KYNIKFKLLDGQYNFYEHFICKDLIAYLKLAVNMCDKNSFMRIINKPFRYIGKVNIKKVI 479

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
             R   E  ++ +++  +  I + ++ I  + + I         D    IL         
Sbjct: 480 DNRIR-ENCFDILRQVGDLPIFQLKN-ITVLEKNIRKLNRMKKQDRINYILDKLDYMDYL 537

Query: 518 ------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
                 ++R  +E+ D++ EF       +     S++  +  + +   T+++      N 
Sbjct: 538 KNYCMKLNRDMDELQDIIGEFREACGEFD-----SIESFLDNVGKVEQTLEKGKKEG-NT 591

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + T+H  KG+E   VF+++    +  H +                             
Sbjct: 592 VTLSTIHGVKGMEFENVFIINCSEGLIPHANSI--------------------------- 624

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                    ++  EE  RL YVG+TRA D L +C  S    +
Sbjct: 625 ---------QNNLEEERRLFYVGVTRAIDNLTLCYSSTIRKK 657


>gi|260914127|ref|ZP_05920600.1| exodeoxyribonuclease V beta subunit [Pasteurella dagmatis ATCC 43325]
 gi|260631760|gb|EEX49938.1| exodeoxyribonuclease V beta subunit [Pasteurella dagmatis ATCC 43325]
          Length = 1234

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 120/854 (14%), Positives = 262/854 (30%), Gaps = 136/854 (15%)

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F DL+    + L   +    +   I  +    +IDE QDT  IQ+++   +         
Sbjct: 377  FNDLLRLLQEALY-SEKGDELAQFIRLQYPFAMIDEFQDTDNIQYQIFSKIYIQLSS--- 432

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
               SP     +GD KQ+IY F GA+     +     +++ T          L  ++RS  
Sbjct: 433  ---SPTGFIMIGDPKQAIYKFRGADIFTYFKAALETKQKFT----------LGTNWRSEE 479

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTI-RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             ++  V+ +F   EN             +  S R  +       +   +      +  +E
Sbjct: 480  TVVNAVNGLFDFDENPLVQPFLYEQIQFQPVSFRANKPKFYLNGKVQPAVQCYIGDLGKE 539

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-----SNGKKRVIQAKDILVLVRK 382
            S     +   +   A   A  I   + + +    +F     S  +   +  + I VLVR 
Sbjct: 540  SRNGRLNEDQRYILAETCAASIYQWLQSAVENQAVFKASRDSKEEIEPLTEERIAVLVRD 599

Query: 383  RKDTPLITFLTRFLKNDYKI-SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             K+      + +       I SV  +D   + D    ++L+ + +  L+   + + +  +
Sbjct: 600  WKEA----EVIKSALQKVGIASVYLSDNSNVFDCPQAQELVLILKACLNPFSERNILNAI 655

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             + ++  +  +I +I           +   ++     +  Q ++  +H+L    +     
Sbjct: 656  ATSIWRLTSAEINQIKQDEQRWTNTVDDFVRYQRIWQT--QSILAMLHQLFLEKK----- 708

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--EQYPP 559
                 +L  + G +             L E L       ++  S L+    ++  E    
Sbjct: 709  -IAENLLMTEGGERAVTDLL------HLAELLQEASPLNESPASLLRWFEKKIQGENRQG 761

Query: 560  TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             ++    +    V+I+T H +KGLE  +V+L    +   S+       I    N++    
Sbjct: 762  DLQIRLESERKLVKIVTFHKSKGLEYDLVWLPFIANPPKSNDS----LIQTYFNEEQKAV 817

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE------ 673
            +W  + +  + I  +L          E  RLLYV +TRA  Q+II    N S+       
Sbjct: 818  LWDMEGEHSDEIQRELR--------AEEMRLLYVALTRAKYQVIIAMPENFSSNWNAIQY 869

Query: 674  -----KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                 +         +        ++  +I + + ++ +       +  + + +      
Sbjct: 870  LLTQGRMDVASVRTALTAFKDRMAKQNVQIAIDDLLDIEGKAPLLLAKPNEQLSAATFTG 929

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE----------------- 771
            +I+Q               K+ +        S +D     + E                 
Sbjct: 930  SIEQNWQVTSFSAISHFHEKSVLQHYLDAKQSAVDFSQFLSQEKDYDQNVVIDNTALVSF 989

Query: 772  ------------SLLSDNQTFNRGLIIHKLLQVIFTLPE----------------HKRKN 803
                        S      +   G ++H   +                          + 
Sbjct: 990  GTTILEGYEADYSPFDFPASARVGKVLHSYFEKYPLNQPVEMDAVEKICQQLQLEDVWQI 1049

Query: 804  FITSYCTKNAKL---------WPAKEYKNLLLSITRLLENP------MMTTAMSCDSYSE 848
             +  + T+                   K+ L  +   L+             +       
Sbjct: 1050 TLQRWLTQILHTPLFSTSTFCLSDLAMKDCLKELEFYLKLENTFDVVRFNHLLQKYHLFS 1109

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP-------QEIEHI--PYT 899
              +   +       ++ G ID +       ++ +YK++           + +E     + 
Sbjct: 1110 EPLQLDVVREGIKGMLRGFIDLVFRHNGKYYLLDYKSNKLGNLLSDYSTENLEKTMCKHY 1169

Query: 900  HIAQLSIYEKILKD 913
            +  Q   Y   L  
Sbjct: 1170 YHWQYLFYCVALHR 1183


>gi|229095812|ref|ZP_04226791.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-29]
 gi|228687645|gb|EEL41544.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-29]
          Length = 688

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 105/658 (15%), Positives = 206/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   ++            S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVANLPGMNRATSSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+         ++    I +     N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDGYDAETMLAMISLEKNNLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  I+ ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIRPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|256026773|ref|ZP_05440607.1| DNA helicase II [Fusobacterium sp. D11]
 gi|289764769|ref|ZP_06524147.1| DNA helicase II [Fusobacterium sp. D11]
 gi|289716324|gb|EFD80336.1| DNA helicase II [Fusobacterium sp. D11]
          Length = 919

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 146/926 (15%), Positives = 296/926 (31%), Gaps = 195/926 (21%)

Query: 52  TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
            L++  + +  ++ F  LS      K   QK+                    +++   + 
Sbjct: 126 RLKEYKKLEDYQKFFDNLSYNENKYKSDWQKSAF-----------------LRNKINDLN 168

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +     +  ++T   +   K     YE+   +N ++DF  L +   ++L K +       
Sbjct: 169 ENAIDIESVQTTDIYINFIKSAYKLYEKQLFENNIVDFSYLQVEFLNMLLKNNE---FLE 225

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           KI+   ++I++DE QD++ IQ +++ S++++           + +  VGDE QSIY F G
Sbjct: 226 KINNNFDYIMVDEYQDSNKIQEKILLSISKN----------KKNICVVGDEDQSIYRFRG 275

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L   +   +       +  +I L  ++RS   I+   ++  +  +         
Sbjct: 276 ASAENILNFSKYFNED------ECKLIVLNENYRSVNHIVEFNNRWINAID--------- 320

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                              W     + +     + +  TS    +   +    + R    
Sbjct: 321 -------------------WYGNRFEKNIVSMRENDYMTSNVFHISGSTLDENI-RNTVT 360

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I  +            ++     I +L            L   LK +  I V      +
Sbjct: 361 FIKKL--------KQNNKITNYNQIAILF-SHFKDRSAKKLEDALKKEQ-IEVYSPRTKV 410

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
             +   +K               L+F  +L      F E+ +        E   +     
Sbjct: 411 FFEMYEVK---------------LTFGVILACFKKYFPEEALDTYL---SECLDLARLEI 452

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VL 529
           +  N  ++  +  I+ I E     +F S ++ F  +L     +         E      L
Sbjct: 453 RKDNEFLAWIKEKIENISEY----KFNSLNEIFYELLNFSYYKNVLEEESPIEARANHNL 508

Query: 530 DEFLNFTLRNE---QNSYSSLQE--------LISELE----QYPPTIKRAHSANHNEVRI 574
                     +    +   S+++            LE         I       ++ +  
Sbjct: 509 AILTKIFKNFQKYVHSKKISIEDDFSIIKYFFTKYLEILKQSRVDEIFSEEDYPNDCIPF 568

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           +T+H +KGLE PVV +    S+      + +   +  L +                    
Sbjct: 569 LTIHQSKGLEFPVVIVFSLYSKPNVSGDLSRQTSIDRLINSN------------------ 610

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                      ++ R  YV  +RA + LI+  +    +E   N + ++  V         
Sbjct: 611 SRISEIDKEYFDFYRKFYVAFSRAKNLLILSCYEKGVSE---NFKPFFYSVRGVNSLQFD 667

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
           + +I L     KDE     ++T                      I    + P+K  +   
Sbjct: 668 INQINLDEVSKKDERRILSYTT---------------------DIALYRYCPMKYFLVRE 706

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
              +                 D + FN G+I HK ++ I      K++ F  +Y     K
Sbjct: 707 KEYS---------------TFDKKVFNLGIITHKAIEHINKSVLQKQEIFSDNYIENLVK 751

Query: 815 LWP-------AKEYKNLLLSITRLLENPM--MTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
                         + ++  + + +E+              SE  V         + I+ 
Sbjct: 752 NIYKFQNIDLDNNVERIINIVKKYMEDEKDNFKYI-KKIEASEFRVE-------DNYILY 803

Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
           G+ID I   +  I I ++KT  +           +  QLS+Y+ +L+  Y +K +   L 
Sbjct: 804 GQIDLILEDENEIKIIDFKTGKY---NEIEFSSNYRQQLSLYKLLLQKKY-DKEIKTYLY 859

Query: 926 YVSE---PKVFIIPQNKLNKAFAEIS 948
           Y+ E    K  +I    L +    I+
Sbjct: 860 YLEEDEPKKEILIDDEDLKEDLENIT 885


>gi|330995679|ref|ZP_08319577.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329574738|gb|EGG56299.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 1082

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 117/896 (13%), Positives = 286/896 (31%), Gaps = 95/896 (10%)

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLKKSQDEFIKIR 111
            L++        E  S L  +    +   +K +    ++ + +    ++L + +    +  
Sbjct: 267  LRRIEDGNMRAEFGSTLQGYTEDAEKMLRKADRSVADLVEAAAHFSKQLAELRGFQTEQL 326

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAW 168
             R  +  +    L  L L   ++        +N       L+  T  LL +    + + +
Sbjct: 327  VRHTSASLALKHLNPLRLLGVIDEEVTALNHENNRF----LLAKTPILLHELIEENDAPF 382

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            I  K+    +H++IDE QDTS +QW+  + L  +       +        VGD KQSIY 
Sbjct: 383  IFEKMGAFFHHVMIDEFQDTSTMQWKNFKILLLESMASGFGN------LIVGDVKQSIYR 436

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            +   +   +   ++       +      I  L +++RS   I+   + +F+         
Sbjct: 437  WRNGDWTILKNIEKEMAVHRPD------IRNLAINYRSERRIIAFNNTLFTAA------- 483

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             +    +   +          + +Q      +    Q   +    +   ++   + +   
Sbjct: 484  AEGLDRLTPDAPIKMAEAYGDVAQQCRPDKGNDGYVQIRFF---NEKDKEDDWETRMLDE 540

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +   +  +              +   ++ +L+R R+    I         D  + +V ++
Sbjct: 541  LCEQVRTLHEAG----------LPYGEMAILLRYRRHADPIIRHFAERFGDR-VKLVSDE 589

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
             F+L+  L++  L+A  R++   ED               S   +     +  E ET   
Sbjct: 590  AFLLSSSLSVNLLIAAMRYMADTEDR-------------VSLAFLALHNGKPTEAETNLL 636

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
              +         +   ++ +  L         ++    +       +        +    
Sbjct: 637  ASRSLETFLPETYLSRMEELKTL-------PLYELQEELYKIFSLGR------IPDEDAY 683

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            L  + +      Q++ S L+  ++  ++   +     S   + +RI TVH +KGL+   V
Sbjct: 684  LFAYFDQVTAYLQDNPSDLRSFLTYWDET-LSGASIPSGEVDGIRIFTVHQSKGLQFHTV 742

Query: 589  FLVDTGS-------QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            F+                   +          D   +     ++  R+++ S   +    
Sbjct: 743  FVPYCDWNIEQDTRGFNRRNDLLWCETHEPPYDSLPVIPITIEAAMRDSVFSKEYEEEHL 802

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              + +    LYV  TRA   L+    +  + +++S      D++Y +        +    
Sbjct: 803  QRRVDALNTLYVTFTRAEKNLLAWCRTRYTMDERSTTG---DLIYHALPRALDGIEETDG 859

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
             +     +   E  T +       R+ +  ++  + +         +  I+         
Sbjct: 860  ENGETSLFTYGEPVTSYSSG----RKTSDNRMETDYRPVPVAMHSYEARIDFCQSNRAEE 915

Query: 762  IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                         S N     G+++HK+   I+T                   +    E 
Sbjct: 916  FLEAFSDTAPPRHSRNDKRRMGILMHKIFSTIYTR---DDVEKALRTLETEGLIGTQLEM 972

Query: 822  KNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
            ++L   + +    P +          Y+E  +  +          + R D++   +  I 
Sbjct: 973  ESLKQQVEKAFALPEVARWFDGTMQLYNECPILTQEYYEDTGKYGTYRPDRVMFGKDEIT 1032

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            + ++K               +  Q+  Y K ++   P++ +   L Y+   ++  +
Sbjct: 1033 VVDFKFGRPH--------DEYRNQVGGYMKQIRLMEPDRRVKGYLWYILNNRLEEV 1080


>gi|269215900|ref|ZP_06159754.1| ATP-dependent DNA helicase [Slackia exigua ATCC 700122]
 gi|269130850|gb|EEZ61926.1| ATP-dependent DNA helicase [Slackia exigua ATCC 700122]
          Length = 1239

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 156/1062 (14%), Positives = 298/1062 (28%), Gaps = 203/1062 (19%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT-----ILKKAQTLQQASQTQCIE 63
               +  ++ +    L       +      S +            K  + L   S+     
Sbjct: 200  AGPAPVVLAQQALDLARTIAPSLAGLNDSSSKREFEAALHGCEQKLDELLSSWSEGAD-- 257

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            ERF  +   F          +  +   K        + +   E  +I             
Sbjct: 258  ERFLGILGAFP---------MPKRTFGKGDNPYAAHVGEWAQELAEICLNALQASARIHF 308

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 LA  + A +E  K++ CVLD  DL+   +  L+       I  +       ++ID
Sbjct: 309  ATLRGLASDVLAAFERIKREACVLDNTDLVTKAHRALEDHPA---IAREYAHAFRLVMID 365

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT  +  +++  L++              L  VGD +QSIY F GA+        R 
Sbjct: 366  EFQDTDQMGIDMVMRLSD----------GGARLCTVGDAQQSIYRFRGADVGVF----RA 411

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
            ++ R    G    +  L  ++RS AD+L  VD +FS           +       S R G
Sbjct: 412  HEARMRALGDAAMVRTLDTNYRSNADVLAFVDCLFS---------GRAMFGASFMSLRPG 462

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
            +  +        S    Q    Q S      S+      ++ A  IA     +       
Sbjct: 463  RDESRIDAPYRGSAPRIQVVLVQRSKPPKGSSIDSSCKTAVAADAIARRFERLRAEGH-- 520

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                    +A+D++VL+ +  +        R          V     +  +    + +++
Sbjct: 521  --------RARDMVVLLGRMTNADAFARALR----GRGFECVIAGGSLFGEAPETRAVVS 568

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG------ 477
            L R I +  D+ + +  L+S LF   +DDI  + T+  E  ++                 
Sbjct: 569  LVRAIANPNDETALLDTLESDLFAVGDDDILSLVTECREDGSIARRALARGFWDLLDREP 628

Query: 478  ----ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                     H    +     +A+  +  D     L A     +  S+    +    +   
Sbjct: 629  TVGISQGLAHAASVLDACCRMARTSTVEDTLLHALAASGWLARLESQGAEGIARAGNAL- 687

Query: 534  NFTLRNEQNSYSSL--------QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
               +R      + L          +   + +         +   + VRIMTVH++KGLE 
Sbjct: 688  -KAVRFAAGLAAELGCGIAGVASAMPDRIVRAKEAPGALSAGEGDFVRIMTVHSSKGLEF 746

Query: 586  PVVFLVDTGSQVFSHKHIKKM---------HIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            P+V + + G                      ++P     P        +      V   +
Sbjct: 747  PIVAVAEIGKGKEPTNEAFLSTRIKGVTYATLLPRSAFLPKELKKKADAFVLPEDVRADV 806

Query: 637  KH------------------LKKSTQEEYNRLLYVGMTRASDQLIIC------------- 665
                                  +  ++E  RL+YV +TRAS+ L++              
Sbjct: 807  DRLVASSESPASRRRAIVAYETEQGRQEAQRLMYVALTRASEALVLVMDVDDNAAHDIRA 866

Query: 666  ----------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK----LTNSINKDEWIA 711
                             +  ++  +    +      D   ++I         +       
Sbjct: 867  YASLDGAIRNSIMGFGGDSLADFPSGASTLPYGGSEDAAFERIVIGVNDEGGVIVAGGDG 926

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-------------- 757
                    +    E+           ++P   F P +        L              
Sbjct: 927  EACRWGDADADEGEKRVFAIPEAMPSRMPSVPFGPEREGFESYTSLSSLAGALDANKGGA 986

Query: 758  ---------NPSTIDTKGKTNL--------------ESLLSDNQTFNRGLIIHKLLQV-- 792
                     +       G                     L +++  + G   H L Q   
Sbjct: 987  SATAREGVPSFDEASEAGIDPFADDAEEGAFGRAGAAFALDEDRATDVGAAFHALAQWSV 1046

Query: 793  -------------------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
                               +   P  +      ++         +     L  +  R   
Sbjct: 1047 EEFESGLSSCRCDASRREGLPLPPPDRIAATAQAF------GVSSSAAPRLEAACLRWTG 1100

Query: 834  NPMMTTAMS-CDSYSEVSV---SGKINCPKKDIIISGRIDQISISQQN--IFIFEYKTHH 887
            +     A++  + ++E       G  +   ++ ++ G +D  S  +      I +YKT  
Sbjct: 1101 SACAREAIAWPNLHAEYPFFIPMGASSDGSEEWVLEGSMDLFSGEEDGSCARIVDYKTGG 1160

Query: 888  HVPQEIEHIPYTHIAQLSIYE-KILKDSYPNKSLVCLLIYVS 928
                  E I   H  Q + Y    L   Y    +    +YV 
Sbjct: 1161 RFDDAPEDILERHRLQATCYAFAALSSGY--DRVEATFVYVE 1200


>gi|289565812|ref|ZP_06446254.1| UvrD/REP helicase [Enterococcus faecium D344SRF]
 gi|289162355|gb|EFD10213.1| UvrD/REP helicase [Enterococcus faecium D344SRF]
          Length = 668

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 104/670 (15%), Positives = 209/670 (31%), Gaps = 101/670 (15%)

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
           I +  K R I+ KDI++L   +K+   I  + + L     I +  ND         I+ +
Sbjct: 2   IKNQKKVRPIEYKDIVLLTPTKKNNLTILEIFKTL----DIPLEMNDAQNYFQATEIRTM 57

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ETVYEYIQKFANCGI 478
           ++L + I +   D+    +L+SP+    E ++  I          + V  Y     +   
Sbjct: 58  ISLLQLIDNPYQDIPLAAVLRSPIVGLIEPELASIRLADRAHTYYDAVLAYQASNEDELA 117

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTL 537
           +K +H  K +     +A+  S  D    I       +  +    G +    L   ++   
Sbjct: 118 AKLEHFGKQLEHWRELARRSSITDLLWDIYYKTGYLEYVVGLPAGAQRQANLYALVDRAK 177

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593
             EQ+S+  L + +  +E+     K           N VR+MT+H +KGLE PVVFL+D 
Sbjct: 178 AYEQSSFRGLYQFVRFIEKMQEKDKDLAEPVISIEDNAVRVMTIHASKGLEFPVVFLLDM 237

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             +        +      L           +          +    +     E  R LYV
Sbjct: 238 TKEFNLQDLRNRYAFEEKLGAGIRYMDPETRVLYDTLPFQAIKLAKQNKLLSEEMRKLYV 297

Query: 654 GMTRASDQLIICKHSNTSNE--------------------KKSNQRTWYDMVYDSFHNDE 693
           G+TRA  +L I        +                    +   + +  + +        
Sbjct: 298 GLTRAEQKLFIVGSYKNKEQMIQTWSEAADHEELVFDPALRLKGRSSLMNWIGYGLIRHP 357

Query: 694 RVKKIKLTN------------------SINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
            ++K                       +           +     N   + +E    L D
Sbjct: 358 EMQKYLEEEISTSLLQHSNAQFSISWMNQQSIIEQRQLLAEKELVNLDQQMKEDETLLAD 417

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ----------------- 778
             +       P +         + S I    +   ++  S                    
Sbjct: 418 SLQKRLAYEYPYQASSQTTSYQSVSEIKRLFEDPDDTQESRLTLESSQNKAASRQFRYTQ 477

Query: 779 ----------------TFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKLWPAKEY 821
                               G   H LLQ++   +P  +  +       +   +      
Sbjct: 478 EQLAEPKFLQKDRQVSAATVGTATHALLQLLPLEMPTTESIHQKLQELVRKRLVDEKVAK 537

Query: 822 KNLLLSITRLLENPMMTTAMS--CDSYSEVSVSGKINCP---------KKDIIISGRIDQ 870
           K  + SI    +  +    ++   +   E   S  +            + +++I G +D 
Sbjct: 538 KVDVSSIIWFFQTELGQQLIANKENVKREQPFSMLLPADEVFQDYLNQEDELLIHGIVDG 597

Query: 871 ISISQQNIFIFEYKTHHH-VPQEIEH---IPYTHIAQLSIYEKILKDSYPNKSLV-CLLI 925
               + ++ I+++KT     P +      I   +  QL +Y++ + ++  NK +    LI
Sbjct: 598 YLEEKDHLNIYDFKTDFILPPDDPAEIDTIVQKYQGQLRLYQQAMSEAL-NKPVENVFLI 656

Query: 926 YVSEPKVFII 935
            +   ++  I
Sbjct: 657 LLRVKQIINI 666


>gi|195953827|ref|YP_002122117.1| UvrD/REP helicase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933439|gb|ACG58139.1| UvrD/REP helicase [Hydrogenobaculum sp. Y04AAS1]
          Length = 715

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 101/578 (17%), Positives = 189/578 (32%), Gaps = 118/578 (20%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
            +++  +I +       +              L   +  A  +   + F  L+    D+L
Sbjct: 143 DEAKKLYIAVNQAIEGIRFLDEDNKFDRKVLELKDIFLNAMIETSAVTFSYLMGAFKDML 202

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +K       R       ++I++DE QDT+  Q+E+I+ +           S    +  +G
Sbjct: 203 QKDGA---FRNYYQNFFDYIIVDEFQDTNTAQYEIIKHI-----------SKKDNICVIG 248

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  Q IY +  A P  ++                  II+L +++RS+++IL++ + V   
Sbjct: 249 DPNQCIYEWRMAHPDNIISFIEDY---------NPEIIKLNINYRSSSEILSLANDVLKN 299

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +                          +L   + S             T     +    
Sbjct: 300 SKAKWK----------------------ELVPILKSHKKENQ-------TYPKPVITFHP 330

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           +    A  IA  I  +            + +  ++I +LVR    T  +           
Sbjct: 331 NEEKEAEWIAKKIEEL-----------SKSVPLEEIAILVRVNYITNFLEQAL----VKA 375

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-Q 459
           KI               IKD++A     ++ +D +SF   + +P     E  + KI    
Sbjct: 376 KIPHKIIGALRFFQRKEIKDILAYLHLAINPKDSISFQRAITNPKRGIGEKTVEKIINLS 435

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHEL-----IHIAQFCSPHDFFTLILGAKKGR 514
           + ++  + +  +      + +    IK +  L        A+  +   +   ++   +  
Sbjct: 436 KQKSIDLIQATKYVLGNKLFEENDFIKAMERLVYNLEKGQAKDRNISFYVEKLINDIRYF 495

Query: 515 QQFI---SRFGNEVIDVLDEFLNF----TLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
           +           E ID + E L F      ++++N    L+EL+ E+             
Sbjct: 496 EYLEQEYKEDYQERIDNVKELLRFFEIEAQKHQENQKERLKELLQEISLMEE----DEKD 551

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           N   V+IMTVH AKGLE   VF+    + +  H       +                   
Sbjct: 552 NSKAVKIMTVHKAKGLEFEAVFMPRLENGILPHSSAFSDVL------------------- 592

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                            EE  RLLYVG+TRA   L + 
Sbjct: 593 ---------------DMEEERRLLYVGITRAKKYLFLS 615


>gi|288553378|ref|YP_003425313.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
 gi|288544538|gb|ADC48421.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4]
          Length = 785

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 97/632 (15%), Positives = 199/632 (31%), Gaps = 113/632 (17%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKST 123
            F   +S  L +    +  I+ +   +   D KE    ++  +    ++        K  
Sbjct: 243 DFEKWNSQHLLKWDWQKDQILKEAGREIDLDEKEFAYDQALTQISWWKNHMQNPNEIKPK 302

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 A YL   YE+ +    + DF+D+++   DLL        +  +  +   ++ ID
Sbjct: 303 DIWEERAAYLYKRYEQMRTSKRLFDFDDMLLGCYDLLTTNQA---LLERYQERFAYVSID 359

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QD + +Q E+I  LTE          + R L  VGD+ QSIY+F G++P  +L  K  
Sbjct: 360 EFQDINKVQVELITLLTE----------TKRNLCVVGDDDQSIYAFRGSDPDYILNFKSD 409

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                     +  +  L  ++RST  I+   + V +  +        +            
Sbjct: 410 YP--------EAKVCVLDQNYRSTHPIVESANNVITTNKTRFNKQLHAQH---------- 451

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                              +         +D   +       A  I   I + I      
Sbjct: 452 ------------------TDENAPVLFFPYDEEEE-------ATMIVNDIKSRIKNG--- 483

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   +  D  VL R    +  +            I    +D        A++ ++A
Sbjct: 484 -------AEPSDFAVLFRTNVTSRALFERMVTSSLPISIE---SDGDSFYRRKAVRKVLA 533

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
             +  ++ ++  +   ++ +      +  I  +       +  +       +   +  Q 
Sbjct: 534 YLQLCINPDNGQAIQDLIGALF--LKQQVIQDLKALTITEDCSFVEALTHLSGLPNFQQK 591

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-----EVIDVLDEFLNFTLR 538
            ++ + E     +  +P +    I      +     +           D + +      +
Sbjct: 592 KLQKLPEQFKQIKKKTPVEAIAFIEQEMGLKDYLKKQGNEGNKLDRGSDDVRDLKVAARQ 651

Query: 539 NEQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +E     +++  I  ++         R   A    V+++T+H AKGLE   V+++     
Sbjct: 652 HE-----TIEAFIQHVDHMIAKQEEARKMPAEKTAVQLLTIHRAKGLEYKHVYILGANEG 706

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              H                                 D  +       EE  RL+YV MT
Sbjct: 707 SLPHD-----------------------------YALDAWREGDDKPLEEERRLMYVAMT 737

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           RA + L I   +    ++  + R   ++   +
Sbjct: 738 RAKNTLAISVPTMRRGKRAHSSRFVREVKKMA 769


>gi|326560523|gb|EGE10905.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis 7169]
          Length = 1315

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 151/1017 (14%), Positives = 302/1017 (29%), Gaps = 158/1017 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +    +            K+    +IN+      + L    + ++ + ++ N Y   
Sbjct: 328  DALKLIDAIIKAMDKDWQIFNKSANPSDINQFLALPLQALSDIANVYLTLSEQTNLYHTH 387

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                  L+    +    E     +    F   ++  N+ L+       +  +I       
Sbjct: 388  ICRHIILSAKSQIAQRLET----HGQTTFTLQMVRLNEALRNSPA---LARQIRHHYPVA 440

Query: 181  LIDEVQDTSLIQWEVIRS-------------LTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            LIDE QD + +Q E+I               +  +   G+        L  VGD KQ+IY
Sbjct: 441  LIDESQDINGLQVELIELVYLNEIANYHKNLIRYEQIGGEKPKLPRGFLLLVGDPKQAIY 500

Query: 228  SFHGAEPKRVLREKRI-NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQ 285
             F G +       K   NQ     A      + L ++ RS+  ++  ++  F    ++A 
Sbjct: 501  RFRGGDVTNYNLIKHYGNQDLLIKAPLMNQSLSLTVNRRSSKALIEALNAWFDNNHQDAV 560

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                +    I ++  +  + G    W+           P       +FD +     A+  
Sbjct: 561  ANHANLGQGIFYQQIQAHKDGGGIHWQSDAYADYYGKYPIAV---LHFDHIEAGQKAAQR 617

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +IA  I+ ++  D        + I  KDI VL R       I      L     I  +
Sbjct: 618  AEQIARHINTILQGDHTLHG---QKILPKDIAVLGRTADTLDRIKSELDQL----NIPAI 670

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                  +    A  DL+AL   IL      +    L S L   +      I     +   
Sbjct: 671  IPKEMNIFITQAADDLLALIGAILQPNHSENLGKFLVSSLVGMTLKQAINIIEPNDQ--- 727

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-------I 518
              + +    +   +   H++ Y+ +     Q           L                 
Sbjct: 728  --QALDNDLSETQNLKTHLLAYLKKSYEKWQKFGVSSALAYALHHSPIDYDDDKSPWLKA 785

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMT 576
            +  G   +  L+  +       Q     +     +                + + V +MT
Sbjct: 786  ATQGERYLVDLERLVALVSEQSQLHEMRIIAWYHKQMNADVDSHNKRPILPSESGVNLMT 845

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P+V+++    +  +      + I P  N +    + + Q    +       
Sbjct: 846  IHKSKGLEFPIVYVIGMDEKPKNEN---GLTIYPYTNHNFQRCLSLSQGNLIDENY--YY 900

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN----D 692
               ++   +E  RL YV +TRAS+QL I       ++K S +   Y  +  +        
Sbjct: 901  HINQQELIDEIRRLGYVALTRASEQLYIVG--GDLSKKTSKEMPLYQWLDCAGEKILSLP 958

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +R+K       + + +  +  + T  P  +          +   Q   +   S       
Sbjct: 959  DRLKGWVDWIDLTEADLFSQPYQTKLPNLSTKNYAPWDMVMTKTQFFGEYKTSFSALITR 1018

Query: 753  EPY-ILNPSTIDTKGKTNLESLLSDN----------QTFNRGLIIHKLLQVIFT------ 795
                 ++P   D    + L  + + +          +    G  +HK++Q + T      
Sbjct: 1019 LDKSAISPDEADIDQLSVLTDMAASDQFDDIRTSFFKGSLAGDFLHKVMQFLPTDRLALA 1078

Query: 796  -------------LPEHKRKNFITSYC-TKNAKLWP---------AKEYKNLLLSITRLL 832
                           + ++      Y  T+ A+            A ++  L+  I +L 
Sbjct: 1079 SLHDAHRIISGVIYEQGRKLGIAERYLPTRPAQQIGTRINSNEHQADDHTKLVAWIYQLA 1138

Query: 833  ENP---------------------------------MMTTAMSCDSYSEVSVSGKINCPK 859
              P                                  +       S  ++ +        
Sbjct: 1139 YAPFRASHRSLMSLPMTVQLRELSFTLGLGDTFSITRLNEVFKAHSDKDLVLLDDDYHTM 1198

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKI 910
            +   + G ID +    +  FI +YK+++      E+             +  Q +IY+  
Sbjct: 1199 RYRYLRGEIDLVYECDRRFFIVDYKSNYLGSTPDEYHDHAMAAVMDKVGYWLQAAIYQVA 1258

Query: 911  LKDSYPNK------SLVCLL-----IYVS--------EPKVFIIPQNKLNKAFAEIS 948
            L      +      +    L     +++            +   P   L  A  EI 
Sbjct: 1259 LHRLLKIRLKDYVGNEAAYLGAVEYVFLRGVQEGNEKTGHLCWQPPLSLILALDEIL 1315


>gi|93005845|ref|YP_580282.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
 gi|92393523|gb|ABE74798.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
          Length = 733

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 111/625 (17%), Positives = 199/625 (31%), Gaps = 136/625 (21%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSP---DLKEKLKKSQDEFIKIRDR 113
             T   E+   L+           +K   T+  N+  P    L+     S++  I IRD 
Sbjct: 188 LDTGDSEDAIDLIH---------KEKKYPTKITNQAFPRKKTLQNIFSTSRNRRIHIRDL 238

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                 +      + + + L   + E K+ N + DF+D+I      LK  D     R  +
Sbjct: 239 IEN--SYPDIAVHIPVIEQLAIDFHEYKRANHLYDFDDIISQVVRHLKHNDT---FRQLL 293

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             +  +I++DE QDT++ Q E+I  +            +  +L  VGD+ QSIY+F GA 
Sbjct: 294 QNQYRYIMVDEYQDTNIPQKELIDLICA---------PTSVSLMVVGDDNQSIYAFRGAN 344

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            + +L               +  +I+L  ++RST  +L  ++ + +           S  
Sbjct: 345 YENILLFGEGYP--------EAKLIKLEQNYRSTPAVLDYINALSAQITLGYQKQLYSGV 396

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
           +I                              +  +    D   +       A+ IA  I
Sbjct: 397 SI---------------------------EGVKPIFRRLSDESRE-------AKYIADRI 422

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +           K     +D  VL R    +  +    +    +  I  +        
Sbjct: 423 IEL-----------KPDHDYQDFAVLCRTSFQSNYV----QLEFMERNIPFIVVGGIRFI 467

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
           +   IKD++A  + + +  D +++  +L +           ++    +  +  +E     
Sbjct: 468 ERRHIKDVLAFVKILYNPNDTIAWHRIL-TLFKGVGSVTATRLTQAINADDNSFE--PLL 524

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                 K   +      L   +Q  S      LIL       +       E  +      
Sbjct: 525 TTKFAKKSTQLEPLYKMLSQASQAESVEAIIELILDFYMPVLKINEDNWRERSEDFRVLK 584

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-----------NEVRIMTVHTAKG 582
           N  L ++     SL + +  L   PP    A +              N+V I T+H+AKG
Sbjct: 585 NLALEHD-----SLDKFLENLALDPPNDSVATAGEPEKGEEGIDKNRNKVTISTIHSAKG 639

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVVF+      +  H                                          
Sbjct: 640 LEWPVVFVNSLVDGMTPHYRSLSDF----------------------------------E 665

Query: 643 TQEEYNRLLYVGMTRASDQLIICKH 667
             EE  +L YV  +RA  +L +   
Sbjct: 666 ELEEERKLFYVACSRAKSRLFLTAP 690


>gi|254520983|ref|ZP_05133038.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14]
 gi|219718574|gb|EED37099.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14]
          Length = 1226

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 136/941 (14%), Positives = 262/941 (27%), Gaps = 131/941 (13%)

Query: 47   LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
                + L   ++     E  +      L  +    K    ++  +++P     L+     
Sbjct: 273  HPLGRQLLAWAERADPRELLANERLPALLPEALAAKT--NKKFAERTPS--SPLQAPLAR 328

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            ++ +    + +    +      L        +  K+   V  ++DLI      L+     
Sbjct: 329  YVALLAERDAWLRATALNFLHRLRDEATQRLQALKRTRRVQTYDDLIDGVALALEGPQRL 388

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
            A +R ++  +    L+DE QDT   QW +  ++  D    +        LF +GD KQ+I
Sbjct: 389  ALVR-QLRAQYRIALVDEFQDTDDRQWGIFHTVFGDSPEVREL-GLAPALFLIGDPKQAI 446

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F G +    L+ K+                 L  +FRS   +L  +  ++       G
Sbjct: 447  YGFRGGDIHTYLKAKQ----------VAQQAPVLDQNFRSRPAVLRALQALYDN----GG 492

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                    I+    R    G V++    +    +          S  D      ++   A
Sbjct: 493  EDAFLERDIQFEPVR---PGGVRIDADYLRDGRAAVALTLRVLRSGGDKAMSADASRDAA 549

Query: 347  RR--IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             +  +A     ++      +  + R +Q  DI VLVR  ++  L+      +     I  
Sbjct: 550  TQACVAAIHQVLVDARAGNAVLRGRPVQPGDIAVLVRSHREATLVQRALAAV----GIPA 605

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
            V   +  L      +DL AL   +L   D+      L + L             QR    
Sbjct: 606  VAAGKQSLFATHEARDLRALLLALLQPADEGRLRAALATVLLG-----------QRASAI 654

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--------TLILGAKKGRQQ 516
               E             +     +       Q   P              +L    G ++
Sbjct: 655  AAMEREGDLQ-------RGFQAQLLHWRERWQRGGPFAVIADVCAAQGERLLALIDGERR 707

Query: 517  FISRFGNEVIDVLDEFLNFTLRNE---QNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
              +         L E L                LQ  ++  +Q          ++   V+
Sbjct: 708  LTNYLQ------LGELLQEASAQALGMHGLLDWLQGQMASADQDDEQQLLRLESDARRVQ 761

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+VFL   G    +        +  +          +     +N    
Sbjct: 762  IITLHKSKGLEYPLVFLPFVGIDGGAPNTASHCTVHVAGER------QLHWKLDKNEAWE 815

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                  ++  + E  RLLYVG+TRA   L I         K        D+     H D 
Sbjct: 816  TASAQREREQRAEDARLLYVGLTRAEHALWIAVGDLAGLAKTRIAPLLGDLQALRAHADV 875

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI---------KQLMDEQKIPKKLF 744
             +   ++  S+ +               T     +                   I     
Sbjct: 876  HIDNSEVPASLPQLAAEVEGELPAVRALTRRVPHDWWVYSFTQLAHADAGAGSDIEAAAT 935

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-----QTFNRGLIIHKLLQVIFTL--- 796
                   +EP            +    +  S            G ++H+ ++ +      
Sbjct: 936  ELPAPAADEPAGPELPLEPALPEPAAAAEDSTPIDPRFMGSRFGNVLHEAMENVDFAAWG 995

Query: 797  -------PEHKRKNFITSYC--TKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMS 842
                       +   +         A          L+  +   L  P+     + +   
Sbjct: 996  GWQPGLEAPEGQAEVLRKALHDEGYADADLEDGVAVLVPLVGHTLTVPLPEGGALHSLDE 1055

Query: 843  CDSYSEVSVSGKINCPKKDIIIS-------------------------GRIDQISISQQN 877
             +  +E+     I       ++                          G ID   +    
Sbjct: 1056 GERRAEIDFHFAIEPTAVPALLQVLHAHGVSSARRGFGQRRRLEGLMTGMIDLTYVRDGR 1115

Query: 878  IFIFEYKTHHHVPQEIEHIP-----YTHIAQLSIYEKILKD 913
             ++ +YK++       + +        +  Q  IY   L  
Sbjct: 1116 WYVLDYKSNRLPGYSPDLLAIAMRHSEYDLQALIYTVALHR 1156


>gi|317497577|ref|ZP_07955895.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895136|gb|EFV17300.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 727

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 103/535 (19%), Positives = 208/535 (38%), Gaps = 73/535 (13%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
           I +D           I + + L++  G P          L+    +++A       + FS
Sbjct: 214 ILRDARFSIDGAYDTIQEALELALSPGGPYFYEKTLRKDLEIIIKIKEA-------QTFS 266

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY---------- 117
            L   F+  +  P+ +   ++ ++    L+++ K  +++   + D               
Sbjct: 267 KLCESFVKME-KPRLSGRKKKTDEIDEMLQDQCKYERNQAYNLLDDLKAAYFYENESEIF 325

Query: 118 ----KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL------KKRDVSA 167
               ++       + L +     Y+E KK   ++DF+D+     +LL      +   V +
Sbjct: 326 HELRRIKSPLKGLIDLTREFMIRYDEKKKNENIMDFDDMEHFALELLIDHYDEEGNPVPS 385

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I  +       I IDE QD++ IQ  ++RS++++             +F VGD KQSIY
Sbjct: 386 KIAREKSDGYEEIYIDEYQDSNYIQDAILRSVSKES-------EGGHNMFMVGDVKQSIY 438

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF  A P+  L +    Q++    G+++ +IEL  +FRS +++LT V+ VF    +    
Sbjct: 439 SFRLARPELFLEKYHGYQQK----GEEYQLIELRNNFRSRSEVLTFVNDVFYQIMHEDLG 494

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           + + T               V L   +  +       +     S      +E +  + AR
Sbjct: 495 NIEYTQ-------------NVALVPTMEFEQGCDAQTELLLLESNEVKDSEEDAVVLEAR 541

Query: 348 RIAYTISNMIGTDTIF--------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            IA  I  MI  +            N   R  +  DI++L+R  K       + +    +
Sbjct: 542 MIATRIHEMIDGEDPMMVTGKDEEGNMILRKAKYSDIVILLRSMKTNA---EVIQKELMN 598

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I    N++    D + I+ L++L   + +   D+    +L+SP+   SE+++ ++   
Sbjct: 599 AGIPAFANNQKGYFDTVEIRTLLSLLSVVDNIYMDIDLAAVLRSPMIGISEEELGRLKVD 658

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
             E +++YE + +  +    K +  ++ +  L     +        L L      
Sbjct: 659 -GEKDSLYECLCETKDKM-EKSKKALELLDLLRDAKTYLPLTQLIWLALEKSGYY 711


>gi|229084316|ref|ZP_04216597.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-44]
 gi|228698973|gb|EEL51677.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-44]
          Length = 644

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 101/659 (15%), Positives = 209/659 (31%), Gaps = 127/659 (19%)

Query: 47  LKKAQTLQQASQTQCIEERFS-------LLSSFFLTQ-----------KFTPQKNIITQE 88
            K A+ ++    +     R +          S FL                  K I+ ++
Sbjct: 62  QKAAEEIRSRVASLPGMNRAASQYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 121

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  ++        + +   YE+ K++   +
Sbjct: 122 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVQAKTPVEQEFREVYERYEDVKQRYGYI 181

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++    ++I +DE QDTS  Q+E+++ L        
Sbjct: 182 DFDDILLETFYMLENN---APLLTQLQNRFHYIEVDEFQDTSYAQYEIVKLLA------- 231

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 232 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 280

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 281 PFIVGLGNEVIKLNQERFKKELYSVHEEGIQPFYARPATTLD------------------ 322

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I + + +              KD  +L R    + 
Sbjct: 323 -----------------EANQILQLIQDKVASGER---------SYKDFCLLYRTHSVSR 356

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R         S   +L +    
Sbjct: 357 ---SLLDQLTIHKVPFIKHGASQSFYEHSLIKPVLDQLRLAYEPFRIESLASILPTMYIG 413

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + + + I + I   +   P   
Sbjct: 414 RDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKINERI-DFIKFIKELEPKKA 472

Query: 504 FTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
              I+  K    +++         +   + E +   L      ++ +   +  +      
Sbjct: 473 LKEIIKGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLEFIRA-AIQ 531

Query: 561 IKRAHSA-----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            ++   A       + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 532 SQKEMEALKTMHEKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHSSSLKD--------- 582

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RL+YV +TRA ++L I        +K
Sbjct: 583 -----------------ANDRVTDTSEALEEERRLMYVAITRAKEELYISSPQFFRGKK 624


>gi|225549079|ref|ZP_03770054.1| DNA helicase [Borrelia burgdorferi 94a]
 gi|225370305|gb|EEG99743.1| DNA helicase [Borrelia burgdorferi 94a]
          Length = 698

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 95/544 (17%), Positives = 173/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFSNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +              G+ +  
Sbjct: 270 -----KFYLVQNYRSNSNIVGIANEVISKNKNRYEKQITTQN------------GSGKRM 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +V Q  S       +     D                                     
Sbjct: 313 KFLVFQSTSDEAEYFSNLLVSNDIET---------------------------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D +SF+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLDKIISTLNDEDVNFNLFCASKKTLGLLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +V   + + +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYDELGKKLFEDNYINLSTFIEDVVIRFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   + +   N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGNFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|160940477|ref|ZP_02087822.1| hypothetical protein CLOBOL_05367 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437057|gb|EDP14824.1| hypothetical protein CLOBOL_05367 [Clostridium bolteae ATCC
           BAA-613]
          Length = 608

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/559 (18%), Positives = 186/559 (33%), Gaps = 114/559 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + L   YE   ++N +LDF+D+++   +L K+      I      +  +ILIDE QD
Sbjct: 158 DMFRQLYRGYEARLRQNRLLDFDDMLVMCYELFKE---RKDILSAWQDKYRYILIDEFQD 214

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + IQ+E+++ L                LF VGD+ QSIY F GA+P+ +L  +R     
Sbjct: 215 INRIQYEIVKMLAL----------PGNNLFIVGDDDQSIYRFRGAKPELMLGFERDYP-- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++R +  I+    +V S           +     H          
Sbjct: 263 ------DAKKILLDTNYRCSRQIVEAAGRVISHNRTRFPKEIKAARGNGH---------- 306

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                              ++W    D              I   I +            
Sbjct: 307 ---------------PVIIKAWQEPMDETLG----------IVTEIRDYASMG------- 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
              I   D+ VL R          L      +Y I     D    L +H    ++++  R
Sbjct: 335 ---ISYNDMAVLYRTNVGPR----LLISKLMEYNIPFYMRDAVPNLYEHWIAGNVISYIR 387

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             L      + + ++  P    S D +          ++ Y+      N  + + + +  
Sbjct: 388 AALGDLSRSNVLQIINRPKRYVSRDALEGQQVSWESVKSFYQDK----NWMMDRIEQLEY 443

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRNEQNSY 544
            +  L ++A   + +     +   +  R+   SR     E+ +VLD+           +Y
Sbjct: 444 DLAMLRNMAPAAAVNYIRKAVEYDEYIREYAQSRRMKPEELFEVLDQLQESAAGF--KTY 501

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                 + E ++          A    V +MT+H+AKGLE  VV+++D    V  H    
Sbjct: 502 EHWFIHMEEYKEQLKKQAADRDAQRQGVSLMTMHSAKGLEFRVVYILDANEGVTPHH--- 558

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                           K +     EE  R+ YV MTRA ++L I
Sbjct: 559 --------------------------------KAVLDPDVEEERRMFYVAMTRAKERLHI 586

Query: 665 CKHSNTSNEKKSNQRTWYD 683
                   +K++  R   +
Sbjct: 587 YHVKERYRKKQAISRFAEE 605


>gi|87122177|ref|ZP_01078060.1| exodeoxyribonuclease V, 135 kDa subunit [Marinomonas sp. MED121]
 gi|86162497|gb|EAQ63779.1| exodeoxyribonuclease V, 135 kDa subunit [Marinomonas sp. MED121]
          Length = 1255

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 131/879 (14%), Positives = 254/879 (28%), Gaps = 150/879 (17%)

Query: 141  KKKNCVLDFEDLIINTNDLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            K++   L F DL+ N +  L    +       +  +I Q     +IDE QDT  +Q+ + 
Sbjct: 355  KQQTQKLTFTDLLTNLDQALAIQAQDETADNALAKRIRQLYPLAMIDEFQDTDPVQYRIF 414

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
              + +      +  ++   L  +GD KQ+IY+F GA+    L  K+              
Sbjct: 415  SQIYQ----PASQANNRLGLIMIGDPKQAIYAFRGADIYTYLAAKKEVDA---------- 460

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I  L  ++RS+A ++  V+ +FS   N   +       +  R ++         + +   
Sbjct: 461  IYSLATNYRSSAAMIQSVNALFSTQGNPFLVEGIPFVKVEDRQTQGQ-------FYRKGK 513

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI-SNMIGTDTIFSNGKKRVIQAKD 375
               +      E   S    L        +A+  A  I   +I      +      +++ D
Sbjct: 514  LQAAMQFMVAEDGFSDDAVLSSAQYQIQMAQLSAEHICQTLIQAQEGEALISSNPVRSGD 573

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I VLV   +   L+             SV  +DR  +      ++L+ +   ILSQ  + 
Sbjct: 574  IAVLVSGYRQAQLMKAALSA---RGVASVYLSDRGSVFASNEARELLLILNAILSQGKES 630

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
            +    L + L  +  D++  +       E   E  + + +        V+  I  LI   
Sbjct: 631  AIRSALATHLLGWQVDELDTLNQDDVLYEDWVERFKTYFDIWHKD--GVLPMIRALIQAL 688

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY--SSLQELISE 553
                       +L   +G ++             ++        E        L   I  
Sbjct: 689  SLAP------KLLAGMQGERRLTDLLHLG-----EKLQQKAKEFESKEGLVRYLALAIQT 737

Query: 554  LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                    K    ++   VRI+T+H +KGLE P+V+L    +    +      H      
Sbjct: 738  PNGDSDEQKIRLESDDELVRIITIHKSKGLEYPLVYLPFAFTPFRINGKYALYHDDTHQL 797

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-------CK 666
            +   +P              D +   +K       RL YV +TRA +   I         
Sbjct: 798  NYAPVPD------------EDQLNQHEKELYAGEVRLAYVALTRAREACFIGCAQVGKAA 845

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE------ 720
                  E   +      ++ +         + KL   +   +      +    E      
Sbjct: 846  TKTKEAELNLHLSGVGSLLCEGKAVALGELESKLKGFLQAYDNEQMALTLLASEQSLLTL 905

Query: 721  -----NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL----- 770
                     +  E   Q                + + E   L         +  L     
Sbjct: 906  NAFSVADEDDENEVKAQHFSGHIERDWWVGSYSSLVVEQAELASEQEKEHSEPGLDESVT 965

Query: 771  ------------------------ESLLSDNQTFNRGLIIHKLLQ---VIFTLPEHKRKN 803
                                     S  +  +    G  +H LL+   ++  L +    +
Sbjct: 966  VSSEILEQASALDEAVLTDLDNEEPSCFTFPKGAKPGTFLHDLLEGNALLGELDKVSFAD 1025

Query: 804  FI-----TSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCDSYSEVSVSG 853
             +                  +    L   +  +L+ P+     +    S   + E+    
Sbjct: 1026 LLKTQYQAKMTEYFINQGYEEWQTVLFAWLEDILKTPLYPGLNLLGLTSDKCFKEMEFFL 1085

Query: 854  KINCPKKDII-------------------------ISGRIDQISISQQNIFIFEYKTHHH 888
             +       +                         + G ID +   +   F+ +YK++H 
Sbjct: 1086 PVAGFNARQLDQIARQYDAVSLKAPAIQERPLKGMLKGFIDLLFEHEGKYFVLDYKSNHI 1145

Query: 889  --------VPQEIEHIPY-THIAQLSIYEKILKDSYPNK 918
                         E I    +  Q  +Y   L      +
Sbjct: 1146 GMSYDDYQAHHMAEAIAEHRYDLQYQLYTLALHRLLKQR 1184


>gi|224533218|ref|ZP_03673818.1| DNA helicase [Borrelia burgdorferi WI91-23]
 gi|224511945|gb|EEF82346.1| DNA helicase [Borrelia burgdorferi WI91-23]
          Length = 698

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 95/544 (17%), Positives = 173/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFSNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +              G+ +  
Sbjct: 270 -----KFYLVQNYRSNSNIVGIANEVISKNKNRYEKQITTQN------------GSNKRM 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +V Q  S       +     D                                     
Sbjct: 313 KFLVFQSTSDEAEYFSNLLVSNDIET---------------------------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D +SF+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLDKIISTLNDEDVNFNLFCASKKTLGLLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +V   + + +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYDELGKKLFEDNYINLSTFIEDVVIRFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   + +   N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGNFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|239616541|ref|YP_002939863.1| UvrD/REP helicase [Kosmotoga olearia TBF 19.5.1]
 gi|239505372|gb|ACR78859.1| UvrD/REP helicase [Kosmotoga olearia TBF 19.5.1]
          Length = 652

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 100/562 (17%), Positives = 184/562 (32%), Gaps = 118/562 (20%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
             K  +   A     + +   Y + K ++  LD++DL+I   +L +       I  +   
Sbjct: 174 IAKHNRKFFAVRDELEEIWKSYTQLKLEHNTLDYDDLLIKAVELFENNPE---ILIRESS 230

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
               IL+DE QDT+L+Q++++  L                L  VGD+ QSIYSF GA  +
Sbjct: 231 RFQWILVDEFQDTNLVQYKLVEMLAG----------VHGNLIVVGDDAQSIYSFRGARFE 280

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            V                + S+ ++  ++RST +I+ +V+ +             S+   
Sbjct: 281 NVYDFLNR---------DQTSVFKIQTNYRSTPEIVRLVNHL----------VPKSSLEK 321

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
           + ++ R      V +                           +       A  +A  I+ 
Sbjct: 322 QLKAVRPSGPVPVIV---------------------------ETWDNLDEASFVAQKINE 354

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            I             IQ   I VL R    +       +   +  ++  +        + 
Sbjct: 355 HIEDG----------IQPNRIAVLYRSHFHS----LELQLELDRRRVPYIVFSGPKFVET 400

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             +KD++A  + + +  D LS+  +L+  P           I   R       E I    
Sbjct: 401 AHVKDILAFLKILQNPYDQLSWGRVLRLFPGVGIRRAT-QIINAIRESLGNDNEVISALR 459

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFL 533
                + + + + I  L  +    SP +  + I     G           E    ++  +
Sbjct: 460 PFATPRVR-IERLISLLEELNSEQSPEEVISTIYKGFYGEYMDEHFSDAKERRMDIERLI 518

Query: 534 NFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
               R +     S+ E + +L       I+R       ++ + TVH AKGLE  VVF++ 
Sbjct: 519 EVADRYD-----SIGEFLEDLAVSEKVDIEREIVDREEKIVLSTVHQAKGLEWDVVFILA 573

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                F H                                      + +   +E  R+ Y
Sbjct: 574 MNPGDFPH-----------------------------------ALAIMEGNLDEEERIFY 598

Query: 653 VGMTRASDQLIICKHSNTSNEK 674
           V +TRA D L + +     +  
Sbjct: 599 VAVTRARDYLYLIRQRTGRSRP 620


>gi|75762299|ref|ZP_00742182.1| ATP-dependent DNA helicase , uvrD-rep family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74490222|gb|EAO53555.1| ATP-dependent DNA helicase , uvrD-rep family [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 688

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 106/658 (16%), Positives = 205/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVAKLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDSETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVQLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S               T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVPPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +    I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQCLQLIQEKVDSGDR---------NYKDCCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  IK ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + Q V + I + I   +   P   
Sbjct: 457 RDDCISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVQKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRITETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|229056964|ref|ZP_04196359.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH603]
 gi|228720353|gb|EEL71927.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH603]
          Length = 688

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 104/658 (15%), Positives = 207/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K+++  +
Sbjct: 165 ILKELRLKDDYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRHNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++    +L+     A +  ++ +  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLEMYYMLENN---APLLTQLQERFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVRNDGIQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  I+ ++   R +L      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIRPVLDHLRLVLEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFINEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|261401620|ref|ZP_05987745.1| exodeoxyribonuclease V, beta subunit [Neisseria lactamica ATCC 23970]
 gi|269208325|gb|EEZ74780.1| exodeoxyribonuclease V, beta subunit [Neisseria lactamica ATCC 23970]
          Length = 1204

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 138/1048 (13%), Positives = 295/1048 (28%), Gaps = 194/1048 (18%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE--- 64
            ++ ++     +     PY         +  + +    T       L +  +T        
Sbjct: 203  AVPQTVLAQIRAYLSRPYLNFRRPQTDLPQARDAALATWQNLCGNLAELKETFWRIHPLL 262

Query: 65   --------RFSLLSSFFLTQKFTPQKNIITQEINKKSPDL---------------KEKLK 101
                     F+ L      +  +P    +  +++++   L                  + 
Sbjct: 263  NGNSYRKNSFAELFDALEQKALSPDLPFLEAKLHERLLKLSSDKLEAGLKKGKTPDAAVF 322

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
                +        N  +  +        L L +YLN    E KK      F+DL+++ + 
Sbjct: 323  AELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSRRERGFDDLLLDVHT 382

Query: 159  LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
             L     +  +   + +     LIDE QDT  +Q+E+ + +           +  R LF 
Sbjct: 383  ALTDNPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---------IAQNRPLFL 433

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            VGD KQ+IYSF GA+    L+           AG       L  ++RS + ++  +  +F
Sbjct: 434  VGDPKQAIYSFRGADIYAYLQ----------AAGDAQHRYTLATNYRSHSALIGSIGALF 483

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL-- 336
             + E    L     + +   ++R              S+   +    Q  W    D+   
Sbjct: 484  RLKERPFVLENIGYSEV--DAARAE------------SRLSPERTAVQIRWLHENDNEKA 529

Query: 337  PQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             ++      A   A  I+  +        N K   +Q+ DI VLVR   +  +++   + 
Sbjct: 530  NKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVRTHNEAVMVSAALK- 588

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 ++  V   R  +        L AL  F L      +   +L S +F +    +  
Sbjct: 589  ---KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGYDAQQLHD 645

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                  E     E                       +                       
Sbjct: 646  FNQNESEILHWAESA------------------RTALDNWNQYGIFAAMQQFSQTHGIET 687

Query: 516  QFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSAN 568
            + +SR     +    + L        +  + ++L + + +                  ++
Sbjct: 688  RLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNNGGDNRAIRLESD 747

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             + V+I+T+H +KGL+ P+V+         +     ++    +   +             
Sbjct: 748  EDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ------- 800

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY-- 686
              +  D  K        E  RLLYV +TRA +QL I    ++             +    
Sbjct: 801  --LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNPLAYLIEGLPQDS 858

Query: 687  -------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE------------ 727
                        D      +    +  +     +++       P                
Sbjct: 859  RETVRQIYDREKDGIAMLKRNWQRLTDNAPSGTDFAFTEDAPPPAAYRGNAGQTAEFAAN 918

Query: 728  ---------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                             + +        ++   P  +         PS  +T   ++  S
Sbjct: 919  SIPERRFRFVRHTSFTALSRQSQTPDDGEEDACPSLDAAETSVPAMPS--ETPTASDGIS 976

Query: 773  LLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
            +    +    GL +H++L+          ++  IT    K    +       +       
Sbjct: 977  IHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLITDKLKKYG--FEEIWLPAVAEMAEAC 1034

Query: 832  LENP-------------------------------MMTTAMSCDS--YSEV--SVSGKIN 856
             + P                                +    + D     EV  + +  ++
Sbjct: 1035 RKTPLTGAYCLSDIPPEYRCPEMGFTLHTEDFGLKRLRDWFARDDIRLPEVCRAAAETLD 1094

Query: 857  CPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSI 906
                +  ++G +D I       I + +YK++H             +     + +  Q  I
Sbjct: 1095 FHTVNGFLNGFVDMICQDPDGNICVIDYKSNHLGTDASAYTRQAMDEAVAHHHYYLQALI 1154

Query: 907  YEKILKDSYPNKS-----LVCLLIYVSE 929
            Y       +  +      +    +++  
Sbjct: 1155 YAVAAARYFKLRRQPPAAVSVRYLFLRG 1182


>gi|229114763|ref|ZP_04244177.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-3]
 gi|228668828|gb|EEL24256.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-3]
          Length = 688

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 105/658 (15%), Positives = 206/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   ++            S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVANLPGMNRATSSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+         ++    I +     N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDGYDAETMLAMISLEKNNLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  I+ ++   R ++      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIRPVLDHLRLVIEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFIDEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|221217822|ref|ZP_03589290.1| DNA helicase [Borrelia burgdorferi 72a]
 gi|224533705|ref|ZP_03674293.1| DNA helicase [Borrelia burgdorferi CA-11.2a]
 gi|221192499|gb|EEE18718.1| DNA helicase [Borrelia burgdorferi 72a]
 gi|224512998|gb|EEF83361.1| DNA helicase [Borrelia burgdorferi CA-11.2a]
          Length = 698

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 95/544 (17%), Positives = 173/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFSNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +              G+ +  
Sbjct: 270 -----KFYLVQNYRSNSNIVGIANEVISKNKNRYEKQITTQN------------GSGKRM 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +V Q  S       +     D                                     
Sbjct: 313 KFLVFQSTSDEAEYFSNLLVSKDIET---------------------------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D +SF+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLDKIISTLNDEDVNFNLFCASKKTLGLLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +V   + + +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYDELGKKLFEDNYINLSTFIEDVVIRFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   + +   N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGNFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|225550062|ref|ZP_03771022.1| DNA helicase [Borrelia burgdorferi 118a]
 gi|225369174|gb|EEG98627.1| DNA helicase [Borrelia burgdorferi 118a]
          Length = 698

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 95/544 (17%), Positives = 173/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFSNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS ++I+ + ++V S  +N       +              G+ +  
Sbjct: 270 -----KFYLVQNYRSNSNIVGIANEVISKNKNRYEKQITTQN------------GSGKRM 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +V Q  S       +     D                                     
Sbjct: 313 KFLVFQSTSDEAEYFSNLLVSKDIET---------------------------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D +SF+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLDKIISTLNDEDVNFNLFCASKKTLGLLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +V   + + +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYDELGKKLFEDNYINLSTFIEDVVIRFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   + +   N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGNFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|206890945|ref|YP_002248960.1| UvrD/REP helicase domain protein, putative [Thermodesulfovibrio
            yellowstonii DSM 11347]
 gi|206742883|gb|ACI21940.1| UvrD/REP helicase domain protein, putative [Thermodesulfovibrio
            yellowstonii DSM 11347]
          Length = 1015

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 141/915 (15%), Positives = 291/915 (31%), Gaps = 138/915 (15%)

Query: 31   INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEIN 90
            I   ++  M+     I      L ++++     +R     +F    +   +K  + +  N
Sbjct: 222  IEVELTKMMQLLKKEINDSGLELTRSTKILDDFDRIIENKNFRELLERGIKKAPVNKPKN 281

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
                   EK+     +FI I  ++  Y      L  L + K       + K+K   +  E
Sbjct: 282  STLLPKYEKIVNLWSDFIDILSKYAFYYALTFYLPYLEVYKGFENLLSQIKQKEFKIFIE 341

Query: 151  DLIINTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            D+    N +L       +   I +++ ++I+H  IDE QDTS +QW  I+ L E+     
Sbjct: 342  DI----NKMLSKYLNNLIVPDIYFRLGEKIHHFFIDEYQDTSPLQWNNIKFLIENALAEN 397

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   +LF VGD KQ+IY+F GA+ K +   ++   +   +A +      L  ++RS 
Sbjct: 398  G------SLFVVGDTKQAIYNFRGADYKIMKTLEQN--EVFPSANKIVKT--LDKNYRSK 447

Query: 268  ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
              I+  + K+F    +   +  +                          +  ++    ++
Sbjct: 448  KVIIDFIMKIFKDKISNHPIYSEPARYTGL----------------HECEQIAEEKFFEK 491

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
             +         E   + + + +  TI           +   R    KDI +L  K +   
Sbjct: 492  GYVELKTFSEDEEEETNIKKYLVETI----------YDVTNRGYLFKDIAILAFKNEQVV 541

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF- 446
             IT     L+    +  +      +       ++++  +F+ S  DD SF   L S +F 
Sbjct: 542  NITQWLNDLQ----LPFISYSSLDVRKRKVTSEILSFLQFLDSPIDDFSFSAFLLSDIFK 597

Query: 447  ------NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                           +   R ++     + + F +          +Y  +L   + +   
Sbjct: 598  NLINNEGIDFCPDEFLLKYRDKSPLYKFFEKDFPHIWG-------RYFKDLFRFSGYLPV 650

Query: 501  HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            +D  ++ L   K  +               + L      E+  YS+++ LI   E     
Sbjct: 651  YDLLSVALSTFKVFETMPDE-----EATFLKLLELIKNFEEKGYSNIKALIDFFES---- 701

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                                                +++      ++ +  +       +
Sbjct: 702  ------------------------------PGDDETIWNINLGTDINAIQVMTIHKAKGL 731

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
              P                     EE   +L V    A     + +      + +  +  
Sbjct: 732  GFPIVFVYLKNEHTPKNRYVLHDVEEGIHILKVTDKMAEKNEFLLQIKEDLKKSELAEML 791

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                V  +   DE     +  N       I  E+   +  N   + E  I   + +    
Sbjct: 792  NTLYVAFTRAEDELYILCRTDNEDKFPFDILSEYLNSNIGNKLFKDESVI---LPKSLEI 848

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
            +    P+  D +    +                       NRG  IHK+L+ I    E  
Sbjct: 849  RASHYPVLFDFSVSNEIVHFAEK-----------------NRGEFIHKILEQIEYANEEV 891

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS---CDSYSEVSVSGKINC 857
             +   +     N + +       +   I  ++ +P +    S       +E         
Sbjct: 892  LEKLNSQIEILNKEFYGNFSASEIKELIIDMINHPDIKKFFSLMHEKVLNE------FEI 945

Query: 858  PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              K+ +I  R+D++   ++++ + +YKT H            H  Q+ +Y  IL + + +
Sbjct: 946  IDKNGVIH-RVDRVVEDKESVTVIDYKTGHP--------QKEHFLQVKLYMNILSEIFKD 996

Query: 918  KSLVCLLIYVSEPKV 932
            K +   L Y+   +V
Sbjct: 997  KKINGYLYYLDLREV 1011


>gi|218509500|ref|ZP_03507378.1| ATP-dependent DNA helicase II protein [Rhizobium etli Brasil 5]
          Length = 539

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 98/613 (15%), Positives = 182/613 (29%), Gaps = 110/613 (17%)

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+  +R L +       +   P+ +  VGD+ QSIY + GAE   +LR ++    
Sbjct: 1   DTNTAQYMWMRLLAQR------SKGEPQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP- 53

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RST  IL     + +  E   G +  +               
Sbjct: 54  -------GAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDR------------- 93

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                        +  +  +    + +DS  +       AR I   I  +     +    
Sbjct: 94  -------------ADPDDVKVQVHASWDSEEE-------ARAIGEEIEQLQRNKHLL--- 130

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   D+ +LVR              L     ++          + L I+D MA  R
Sbjct: 131 -------NDMAILVRASFQMREFEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFR 179

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEY------IQKFANCGIS 479
            +    DDL+F  ++ +P     +  +  +    R     +           +       
Sbjct: 180 LVAQPADDLAFERIINTPKRGLGDTTVRALHDYARARDIPMLAAAADMIETDELKPKARK 239

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
               VI+       + +     +    IL        + +    E    L+         
Sbjct: 240 ALFDVIQSFRRWQELLENTPHTELAEQILEESGYTDMWKNDKSAEAPGRLENLKELIRSM 299

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E     S + +   LE     +    + N + V IMT+H+AKGLE   VFL      +F 
Sbjct: 300 E-----SFESMRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLEFETVFLPGWEEGLFP 354

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+                                       ++  EE  RL YVG+TRA 
Sbjct: 355 HQRSLD--------------------------------ESGRAGLEEERRLAYVGITRAK 382

Query: 660 DQLIICKHSNTSNEK---KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            +  I   SN         +    + D + ++      +++              ++ + 
Sbjct: 383 RRCHIWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGGYGRGGYGQSRFDKAE 442

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PSTIDTKGKTNLESLLS 775
               +      +  +    +                  Y  + P      G+   +S  S
Sbjct: 443 PFANSYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPKGRTIDGELVAKSTSS 502

Query: 776 DNQTFNRG-LIIH 787
           +   F  G  + H
Sbjct: 503 EPSRFTLGDRVFH 515


>gi|15676683|ref|NP_273827.1| exodeoxyribonuclease V 135 KD polypeptide [Neisseria meningitidis
            MC58]
 gi|7226017|gb|AAF41198.1| exodeoxyribonuclease V 135 KD polypeptide [Neisseria meningitidis
            MC58]
 gi|316983777|gb|EFV62758.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis H44/76]
 gi|325140061|gb|EGC62590.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis CU385]
 gi|325200529|gb|ADY95984.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis H44/76]
          Length = 1204

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 131/942 (13%), Positives = 268/942 (28%), Gaps = 168/942 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L +YLN    E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHADTLARAVAENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +   ++R              S+   +   
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAE------------SRLSPERPA 515

Query: 325  QQESWTSYFDSL--PQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVR 381
             Q  W    D+    ++      A   A  I+  +        N K   +Q+ DI VLVR
Sbjct: 516  VQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAARGRLNFKGCPLQSGDIAVLVR 575

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +++   +      ++  V   R  +        L AL  F L      +   +L
Sbjct: 576  THNEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVL 631

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +F +    +        E     E                   +             
Sbjct: 632  TSSIFGYDAQQLHDFNQNESEILHWAE--------------SARTALDNW----NKYGIF 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPP 559
                          + +SR     +    + L        +  + ++L + + +      
Sbjct: 674  AAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLGDQISLAE 733

Query: 560  TIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        ++ + V+I+T+H +KGL+ P+V+         +     ++    +   
Sbjct: 734  NNSGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQGANRT 793

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN-- 672
            +               +  D  K        E  RLLYV +TRA +QL I    +T+   
Sbjct: 794  ELLAKAQ---------LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTAD 844

Query: 673  -------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                   E              +   D      +    +  +      ++       P  
Sbjct: 845  NPLAYLIEGSPQDSRETVRRAYACEKDGIAMLKRNWRRVADNAPSGTNFAFTENAPPPAA 904

Query: 726  REETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILN 758
                  Q  +                                ++   P  +         
Sbjct: 905  YRSNAGQTAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAM 964

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP 817
            PS  +T   ++  S+    +    GL +H++L+          ++  I     K    + 
Sbjct: 965  PS--ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYG--FE 1020

Query: 818  AKEYKNLLLSITRLLENP-------------------------------MMTTAMSCDS- 845
                  +        + P                                +    + D  
Sbjct: 1021 EIWLPAVAEMAEACRKTPLTGAYDLSDISPECRCPEMGFTLHTEDFSLKRLRDWFARDDI 1080

Query: 846  -YSEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------E 892
               EV  + +  ++    +  ++G +D +       I + +YK++H             +
Sbjct: 1081 RLPEVCRAAAETLDFHTVNGFLNGFVDMVCQDPDGNICVIDYKSNHLGTDASAYTQQAMD 1140

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
                 + +  Q  IY       +  +     ++    +++  
Sbjct: 1141 EAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|291550034|emb|CBL26296.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14]
          Length = 609

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 109/622 (17%), Positives = 205/622 (32%), Gaps = 129/622 (20%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T+K+   + +I +E  +   + ++ ++    E  K+++     + F S   S    + + 
Sbjct: 106 TEKYQILRGVINKERMEIFDE-EDFIQDIAAEIGKVKNNRIPLEEFVSEKCSADAFRNIY 164

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
            +YE+ +K+   +DF+D+++   +L +       +  +  ++  ++LIDE QD + IQ++
Sbjct: 165 RNYEQHRKELKKIDFDDMLVLCYELFR---ARPDVLAQWQKKFRYVLIDEFQDINRIQYD 221

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           VIR L +              LF VGD+ Q+IY F GA+ + +L   +            
Sbjct: 222 VIRMLAQ----------PENNLFVVGDDDQAIYGFRGADSELMLGFGKDFP--------D 263

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              I L +++RSTA+I+    K+            ++                V+     
Sbjct: 264 AKQILLGMNYRSTANIVQNSLKLIENNVERYSKKLEANREGGSCLHIQEVKDPVE----- 318

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                          A  +   I                 I+ +
Sbjct: 319 ------------------------------EAEYVLEEIQKCKENG----------IKEE 338

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQED 433
           +I +L R   D   +       K    I     +    + +H   KD+MA  R       
Sbjct: 339 EIAILFRVHTDARAVVEAMVERK----IPFQMKEHLPNIYEHFIAKDIMAYFRLATGARH 394

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
              F+ ++  P      D +        +         +   C        I      + 
Sbjct: 395 RQDFLQIMNRPKRYLGRDSVAGAKASFED--------MRKFYCDKDWMIDRIDQFEWDVK 446

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +    +P+     I                     +++ +VL E             SS+
Sbjct: 447 MLMKMAPYAAIQYIRKRIGYDDFLKEYAFTHQINRSDLNEVLAEIEEAAKAF-----SSV 501

Query: 548 QELISELEQYPPTIKRAHSAN---HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +E  + +E+Y  T+K            VR+MT+H +KGLE   VFL+        ++   
Sbjct: 502 EEWFAHVEEYTETLKVKEKERNRPRPGVRLMTIHASKGLEFKQVFLIAANEGRIPYQ--- 558

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                           K       EE  RL YV MTRA D L I
Sbjct: 559 --------------------------------KAKTDKEIEEERRLFYVAMTRAKDFLKI 586

Query: 665 CKHSNTSNEKKSNQRTWYDMVY 686
           C     + ++ +  R   +++ 
Sbjct: 587 CYVKIKNGKEVAPSRFVDELLK 608


>gi|319789815|ref|YP_004151448.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
 gi|317114317|gb|ADU96807.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1]
          Length = 958

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 155/973 (15%), Positives = 279/973 (28%), Gaps = 147/973 (15%)

Query: 1   LKNRFGLSLNE-SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           L  RFG+S    S E        +       +   V       +    K    +   +  
Sbjct: 94  LLRRFGVSKGLISLEARLASPIEVAELAERAVESAVEEVYSADSEGFRKLLTAIDP-NGL 152

Query: 60  QCIEERFSLLSSFFLTQKFTP------QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
           + +      L      +   P       +    +   +     +E          ++   
Sbjct: 153 EGLLTVERFLKEVIHHRTRFPFVHTVSPEEFFEKAGREFKYIYREVFGSKNTLVKELLKG 212

Query: 114 FNTYKM-----------------FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           F + K+                  +       L     A Y+E  K+N +LD+  L+I  
Sbjct: 213 FKSLKLGSFELSRNQVKKRKKLEVEKVKLLHELLVKALARYDELLKENELLDYNSLLIKA 272

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L++  +  + +           +IDE QDT  IQW +I +L E    G     S  ++
Sbjct: 273 EKLVR--EAPSEVL----SSYRVFIIDEFQDTDPIQWRIIETLYEASQRG----GSEISV 322

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD KQSIY F  A+     R K   +++         + E   ++RS   +L   + 
Sbjct: 323 LLVGDPKQSIYRFRSADVNLWNRVKEWVKEK------GGKVTEKTENYRSGRKLLEFFNT 376

Query: 277 VFSIPENAQGLSEDSTTTIRHRSS-RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           VF                +  R S R  + G V++                         
Sbjct: 377 VFKELYRKTTSHPAELDFVPFRPSERTAEGGQVEVIPI---------------------- 414

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +  S+  LA  + Y +S +           K   +     V+ R            + 
Sbjct: 415 --KSLSSYGLAPFVRYAVSKL-----------KPYAERGTAAVIARSWSALVPFARYLKE 461

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 I                ++L+ L +F L+  D  S   +L S     +  +   
Sbjct: 462 ----NGIPFTYLSSSPYRSEA-FEELLNLLKFTLNPNDYTSLFFLLTSRFLGLTHPEALD 516

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           +  +  E         K         +     + E          +      L       
Sbjct: 517 LVEEVKEEGESPLLRYKLFRE----LKDFRSQLKERSVHPYSLQIYSL----LLRLGYLS 568

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRI 574
                   +    L + L      E     + +EL+  LE     +   A         +
Sbjct: 569 ALRLS-DPDSFSSLLDLLWEIHTVETVESFTFEELVHYLEGLGGDSASSAARVPERGFVL 627

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKH--------IKKMHIMPSLNDDPGIPIWIPQSK 626
            T+H++KGLE   V +V       S+            K+H       +    +    + 
Sbjct: 628 TTIHSSKGLEFNAVAVVPWDKPRPSYSRFTYSNIGYAVKLHAPRYDFSEEEEHLKPFYNW 687

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
             +     L K      + E   L YV +TRA + LI+        +             
Sbjct: 688 CASPYFFYLQKLNDFLNRLEEKNLFYVALTRAKEALILGLKERGKGK------------- 734

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                         T SI  D  +   +    PEN P  R        D   +PK L  P
Sbjct: 735 ------------FSTGSITFDSSLLKGYLKQLPENPPAVRP-------DRSFVPKLLPEP 775

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
             N I      + +  +         L +       G   H L +      +  R     
Sbjct: 776 SVNHIKIRRPSDHADPEELSTKENPHLPNGTSPTEYGDAAHALCEAFLKGADIDRA---- 831

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG 866
                   L P    +  L  + R L +             E      +    +D I+ G
Sbjct: 832 VNYALGHVLNPTPSLEERLRELYRKLSSNNPFPL-EGSIRFE--TELPLLFYSEDSILRG 888

Query: 867 RIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLL 924
           R D +   +   + ++++KT      + E     +  QL+ Y  + + +    ++   +L
Sbjct: 889 RADLVFFKEGGSVEVWDFKTG----LKEEAKLKLYREQLTAYADVFRRA--GYTVNRLVL 942

Query: 925 IYVSEPKVFIIPQ 937
           +++ EP    + Q
Sbjct: 943 LFLDEPPDVWLEQ 955


>gi|110668090|ref|YP_657901.1| DNA helicase II [Haloquadratum walsbyi DSM 16790]
 gi|109625837|emb|CAJ52275.1| DNA helicase II [Haloquadratum walsbyi DSM 16790]
          Length = 965

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 143/961 (14%), Positives = 291/961 (30%), Gaps = 172/961 (17%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT--QCIEERFSLLSSFFLTQ 76
           D +      V  +     L+ +   PT+    +  ++      +  EE F  L+      
Sbjct: 147 DFFRAVEEPVELLGLLNQLAAKGVFPTVDDWYRNGERYLDGDFEVFEEVFDELNQPRNNG 206

Query: 77  KF--TPQKNII----TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
               T +  +      +     +PD +E      ++  ++          +         
Sbjct: 207 SKQSTLRSKLGRYGDDKCYVSDAPDKEEIRGGWGEK--QVPPEVAEIVFDEQREDLKNFV 264

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y E       L+F  L +    LL                  +++IDE QD+S 
Sbjct: 265 HDVYHEYLEFALSRNYLNFGFLQLFAFVLLCDNHQLRDEVA-----FEYVMIDEFQDSSE 319

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+++   L +              +  VGD KQSIYSF  A  + +   +    +    
Sbjct: 320 IQFKLSLLLAD-----------TNNICVVGDWKQSIYSFQYAAVENITEFESRLDRFVDE 368

Query: 251 AGQKFSI----------IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +              I+L  ++RST  IL                   S  ++   ++
Sbjct: 369 LNEDHKRVSWATGSITEIKLVENYRSTQAILDF-----------------SEHSLVTPAA 411

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
               V    + +++ S   +  +          +S  +        + +   I +++G +
Sbjct: 412 SNDDVNEAVVQDRITSLSSNASHE---------NSHIEAIQHEDEHQTVLTKIQDIVGNE 462

Query: 361 --TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
              +  +G+ R+ +  DI VL R R            +  +Y + +       L      
Sbjct: 463 AYQVEEDGELRLPEYGDIAVLTRTRD----FGRELLSVAEEYGLPMTYEGGIELFRSDPA 518

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           K L+A  R +   E D      +      ++ D+I  +   +   +++            
Sbjct: 519 KLLLAWLRIL---ESDSKRGWAVVLEEAGYTLDEIKHVLDTKEYPDSM------------ 563

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
              Q     +  L       +       +         +            D  L     
Sbjct: 564 ---QTFESDLQSL------ETVGGVAQRVFSQYDYDGAYA-----------DVLLTTIQS 603

Query: 539 NEQNSYSSLQELISELEQYPPT---IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               + S+  +LI  +E+        +   SA  N V + T+H  KGLE  +V L +  +
Sbjct: 604 VHSETISTRGDLIRFIERGIEDGSVHEVHASAGMNSVTVQTIHAVKGLEHSIVVLANMNA 663

Query: 596 QVFSHKHIKK---MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
           + F          +   P       +          +N  +D+++       +E  RLLY
Sbjct: 664 RRFPPSSGNNNAIIFDDPIGLRQRKVYDDNGYPHIHDNWRTDVLRKCLPRGYDEERRLLY 723

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V MTRA   L+       +             + +   N E ++     + I++ E    
Sbjct: 724 VAMTRAETHLVFTAGETPNT-----------FIEELPVNLEELEPDVHEDRISETEQTHL 772

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
           + S   PE        T+      + +                                +
Sbjct: 773 QISVPTPEGPVGHSPHTLMNDDVFEDVDN-------------------ANGNVNMNVNGN 813

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
              + +    G   H+  +                    +       E       I   +
Sbjct: 814 GNMNGRGMTFGTQTHEFAERY--------------ILEGDVDPSNDDER-----HIQSFV 854

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
           ++      +      E  V   +    K I ISG +D + I    + I ++KT      E
Sbjct: 855 DS------LDGKLRVEEDVYLPLTVDGKQINISGIVDLVHIRHNTVEIIDFKTDLGQHAE 908

Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK---VFIIPQNKLNKAFAEIST 949
            E     +  QLS+Y  +L + +P++ +   + Y  + +   +  +P + L K  +++  
Sbjct: 909 DE-----YQKQLSVYYHVLNEWFPDREVTTQIFYTYQRRCVDIDPLPLSTLAKLVSDVQE 963

Query: 950 K 950
           K
Sbjct: 964 K 964


>gi|206602356|gb|EDZ38837.1| Putative UvrD/REP helicase [Leptospirillum sp. Group II '5-way CG']
          Length = 649

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 112/627 (17%), Positives = 208/627 (33%), Gaps = 130/627 (20%)

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E++  LL S         +K +    +      +   +  S++  + + D    Y  F
Sbjct: 113 DREDQVDLLKSILSAFPEGLRKELPPAGL------ILNAISLSRNSMLSLED--VIYDRF 164

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              + ++     +   YEE K+K+ + DF+DL+    D+L   +    +   + Q    +
Sbjct: 165 SGLIPAIETVLRIRTEYEELKRKDRLADFDDLLTGWLDIL---ESGPDVLELLQQRFRFL 221

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++  L              ++ F VGD+ QSIYSF GA  + +L  
Sbjct: 222 LVDEYQDTNPLQSTILDKLAA----------RHKSFFVVGDDSQSIYSFRGAHVENILTF 271

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                        +  I  L  ++RS+  IL + +++    E     +            
Sbjct: 272 PDRYP--------EARIYRLETNYRSSPPILDLANRIILGNERRIEKTLRPFH------- 316

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                             +   +P+     S  D           A  I  T+  ++   
Sbjct: 317 -----------------TEEGESPRTVGLYSDADQ----------AHFIGSTVDQLLDGG 349

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
           T          QA +I +L R       ++   +F     KI           +   IKD
Sbjct: 350 T----------QAAEIAILYRSH----YLSLPVQFELARRKIPFSITSGLRFYEQAHIKD 395

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK------FA 474
           ++A  R +L+  D L+   +L+       E    K+     E E V+  +          
Sbjct: 396 VLAHLRLLLNPLDTLAMNRLLRMIPR-MGERSSEKLIRVLGEVEDVFSALTDEKILKTAP 454

Query: 475 NCGISKFQHVIKYIHELI--HIAQFCSPHDFFTLILGAKKGRQQF--ISRFGNEVIDVLD 530
           +      + + + +  L      +  +       IL A   R+    I     E    L 
Sbjct: 455 SLSREGVRKLGERLVSLREVQRKEESTVGLLVMEILEA-GYRRDLYDIREDPEEREADLV 513

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            F              L+  + E+        +  ++++  + V + ++H AKGLE   V
Sbjct: 514 AFAEQL-----GEQKDLEGFLGEITLLENLEEMALSNASVPDRVILSSIHQAKGLEWDTV 568

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F++     VF  +                                     L+    EE  
Sbjct: 569 FVLSMNEGVFPPE----------------------------------KSVLRPQDLEEER 594

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKK 675
           RL YV +TRA   L++C   +  +  +
Sbjct: 595 RLFYVAVTRARRDLLLCVPESAISRGR 621


>gi|326564874|gb|EGE15078.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis 12P80B1]
 gi|326570398|gb|EGE20438.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis BC8]
 gi|326577194|gb|EGE27088.1| exodeoxyribonuclease V beta subunit [Moraxella catarrhalis O35E]
          Length = 1315

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 148/1017 (14%), Positives = 297/1017 (29%), Gaps = 158/1017 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +    +            K+    +IN+      + L    + ++ + ++ N Y   
Sbjct: 328  DALKLIDAIIKAMDKDWQIFNKSANPSDINQFLALPLQALSDIANVYLTLSEQTNLYHTH 387

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                  L+    +    E     +    F   ++  N+ L+       +  +I       
Sbjct: 388  ICRHIILSAKSQIAQRLET----HGQTTFTLQMVRLNEALRNSPA---LARQIRHHYPVA 440

Query: 181  LIDEVQDTSLIQWEVIRS-------------LTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            LIDE QD + +Q E+I               +  +   G+        L  VGD KQ+IY
Sbjct: 441  LIDESQDINGLQVELIELVYLNEIANYHKNLIRYEQIGGEKPKLPRGFLLLVGDPKQAIY 500

Query: 228  SFHGAEPKRVLREKRI-NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQ 285
             F G +       K   NQ     A      + L ++ RS+  ++  ++  F    ++A 
Sbjct: 501  RFRGGDVTNYNLIKHYGNQDLLIKAPLMNQSLSLTVNRRSSKALIEALNAWFDNNHQDAV 560

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                +    I ++  +  + G    W+           P       +FD +     A+  
Sbjct: 561  ANHANLGQGIFYQQIQAHKDGGGIHWQSDAYADYYGKYPIAV---LHFDHIEAGQKAAQR 617

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A +IA  I+ ++  D        + I  KDI VL R       I      L     I  +
Sbjct: 618  AEQIARHINTILQGDHTLHG---QKILPKDIAVLGRTADTLDRIKSELDQL----NIPAI 670

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                  +    A  DL+AL   IL      +    L S L   +      I     +   
Sbjct: 671  IPKEMNIFITQAADDLLALIGAILQPNHSENLGKFLVSSLVGMTLKQAINIIEPNDQ--- 727

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-------I 518
              + +    +   +   H++ Y+ +     Q           L                 
Sbjct: 728  --QALDNDLSETQNLKTHLLAYLKKSYEKWQKFGVSSALAYALHHSPIDYDDDKSPWLKA 785

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMT 576
            +  G   +  L+  +       Q     +     +                + + V +MT
Sbjct: 786  ATQGERYLVDLERLVALVSEQSQLHEMRIIAWYHKQMNADVDSHNKRPILPSESGVNLMT 845

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +H +KGLE P+V+++    +              + ++          +    N      
Sbjct: 846  IHKSKGLEFPIVYVIGMDEK--PKNENGLTIYPYTNHNFQRRLSLSQGNLIDENYY---Y 900

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN----D 692
               ++   +E  RL YV +TRAS+QL I       ++K S +   Y  +  +        
Sbjct: 901  HINQQELIDEIRRLGYVALTRASEQLYIVG--GDLSKKTSKEMPLYQWLDCAGEKTLSLP 958

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +R+K       + + +  +  + T  P  +          +   Q   +   S       
Sbjct: 959  DRLKGWVDWIDLTEADLFSQPYQTKLPNLSTKNYAPWDMVMTKTQFFGEYKTSFSALITR 1018

Query: 753  EPY-ILNPSTIDTKGKTNLESLLSDN----------QTFNRGLIIHKLLQVIFT------ 795
                 ++P   D    + L  + + +          +    G  +HK++Q + T      
Sbjct: 1019 LDKSAISPDEADIDQLSVLTDMAASDQFDDIRTSFFKGSLAGDFLHKVMQFLPTDRLALA 1078

Query: 796  -------------LPEHKRKNFITSYC-TKNAKLWP---------AKEYKNLLLSITRLL 832
                           + ++      Y  T+ A+            A ++  L+  I +L 
Sbjct: 1079 SLHDAHRIISGVIYEQGRKLGIAERYLPTRPAQQIGTRINSNEHQADDHTKLVAWIYQLA 1138

Query: 833  ENP---------------------------------MMTTAMSCDSYSEVSVSGKINCPK 859
              P                                  +       S  ++ +        
Sbjct: 1139 YAPFRASHRSLMSLPMTVQLRELSFTLGLGDTFSITRLNEVFKAHSDKDLVLLDDDYHTM 1198

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKI 910
            +   + G ID +    +  FI +YK+++      E+             +  Q +IY+  
Sbjct: 1199 RYRYLRGEIDLVYECDRRFFIVDYKSNYLGSTPDEYHDHAMAAVMDKVGYWLQAAIYQVA 1258

Query: 911  LKDSYPNK------SLVCLL-----IYVS--------EPKVFIIPQNKLNKAFAEIS 948
            L      +      +    L     +++            +   P   L  A  EI 
Sbjct: 1259 LHRLLKIRLKDYVGNEAAYLGAVEYVFLRGVQEGNEKTGHLCWQPPLSLILALDEIL 1315


>gi|260494799|ref|ZP_05814929.1| DNA helicase II [Fusobacterium sp. 3_1_33]
 gi|260197961|gb|EEW95478.1| DNA helicase II [Fusobacterium sp. 3_1_33]
          Length = 919

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 138/928 (14%), Positives = 292/928 (31%), Gaps = 193/928 (20%)

Query: 52  TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
            L++  + +  ++ F  LS      K   QK+                    +++   + 
Sbjct: 126 RLKEYKKLEDYQKFFDNLSYNENKYKSDWQKSAF-----------------LRNKINDLN 168

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +     +  ++T   +   K     YE+   +N ++DF  L +   ++L K +       
Sbjct: 169 ENAIDIESVQTTDIYINFIKSAYKLYEKQLFENNIVDFSYLQVEFLNMLLKNNE---FLE 225

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           KI+   ++I++DE QD++ IQ +++ S++++           + +  VGDE QSIY F G
Sbjct: 226 KINNNFDYIMVDEYQDSNKIQEKILLSISKN----------KKNICVVGDEDQSIYRFRG 275

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L   +   +       +  +I L  ++RS   I+   ++  +  +         
Sbjct: 276 ASAENILNFSKYFNED------ECKLIVLNENYRSVNHIVEFNNRWINAID--------- 320

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                              W     + +     + +   S    +   +    + R    
Sbjct: 321 -------------------WHGNRFEKNIVSMRENDYMASNVFHISGSTLDENI-RNTVT 360

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I  +   + I             I +L            L   LK +  I V      +
Sbjct: 361 FIKKLKQNNKIK--------NYNQIAILF-SHFKDRSAKKLEDALKKE-NIEVYSPRTKV 410

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
             +   +K        IL+          L   L      D+ ++  ++     V+    
Sbjct: 411 FFEMYEVKLTFG---IILACFKKYFPEEALDIYL--LECLDLARLEIRKDNEFLVW---- 461

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VL 529
                     +  I+ I E      F S ++ F  +L     +         E      L
Sbjct: 462 ---------IKEKIENISEY----SFNSLNEIFYELLNFSYYKNVLQEENPIEARANHNL 508

Query: 530 DEFLNFTLRNE---QNSYSSLQE--------LISELE----QYPPTIKRAHSANHNEVRI 574
                     +    +   S+++            LE         I       ++ +  
Sbjct: 509 AILTKIFKNFQKYVHSKKISIEDDFSIIKYFFTKYLEILKQSRVDEIFSEEDYPNDCIPF 568

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           +T+H +KGLE PVV +    S+      + +   +  L +                    
Sbjct: 569 LTIHQSKGLEFPVVIVFSLYSKPNVSGDLSRQTSIDRLINSN------------------ 610

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                      ++ R  YV  +RA + L++  +    +E   N + ++  V         
Sbjct: 611 SKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSE---NFKPFFYSVRGVNSLQFD 667

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
           + +I L     KDE     ++T                      I    + P+K  +   
Sbjct: 668 ISQINLDEVSKKDERRILSYTT---------------------DIAIYRYCPMKYFLVRE 706

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT--------LPEHKRKNFIT 806
              +                 D + FN G+I HK ++ I            ++  ++ + 
Sbjct: 707 KEYS---------------TFDKKVFNLGIITHKAIEHINKSFLQKQEIFSDNYIEDLVK 751

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG 866
           +              + ++  + + +++             E S   +      + I+ G
Sbjct: 752 NIYKFQNIDLD-NNVERIIDIVKKYIKDE--KDNFKYIKKVEAS---EFRVED-NYILYG 804

Query: 867 RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
           +ID I   +  I I ++KT  +           +  QLS+Y+ +L+  Y +K +   L Y
Sbjct: 805 QIDLILEDENEIKIIDFKTGKY---NEIEFSSNYRQQLSLYKLLLQKKY-DKEIKTYLYY 860

Query: 927 VSE---PKVFIIPQNKLNKAFAEISTKI 951
           + E    K  +I    L +    I+  +
Sbjct: 861 LEEDEPKKEILIDDENLKEDLENINKTV 888


>gi|154249408|ref|YP_001410233.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
 gi|154153344|gb|ABS60576.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1]
          Length = 656

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 103/561 (18%), Positives = 196/561 (34%), Gaps = 123/561 (21%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           K  K  +  + + + +   Y   K++  VLD++DL++ T  +L+  +    +R +I    
Sbjct: 183 KRAKRWIQVVDVIEKVFQEYALEKERQNVLDYDDLLLKTLQMLEGNE---ELRRRISSRF 239

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             IL+DE QDT+++Q ++++ L+E              LF V D+ QSIYSF GA  + V
Sbjct: 240 KWILVDEFQDTNILQLKIVQHLSE----------VHGNLFVVADDAQSIYSFRGARFENV 289

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                             ++ ++  ++RST  I+ +V+ +       + L    T+  + 
Sbjct: 290 KEVMD-----------GANVFKIQTNYRSTDKIVELVNSMIPRNSVPKKLRAIRTSVQK- 337

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                                     P   +   +FD           A  +A  I+ ++
Sbjct: 338 --------------------------PIVVNTYDHFDE----------AYFVAQRINEIV 361

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                            DI VL R    +       +       I          T+   
Sbjct: 362 DEG----------FDYSDIAVLYRAHAHS----LELQLELTKRNIPFKVLSGLRFTETAH 407

Query: 418 IKDLMALGRFILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
           +KD++A  + +L+  D +S++ +LK    + N + + I    T     E     +     
Sbjct: 408 VKDVVAFLKILLNPYDVISWMRVLKLVDNVGNVTAEKIISRITSESNEEKSPLDLFLEMK 467

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
              S  +++   I   I  A      +F+           ++      +  + ++  +  
Sbjct: 468 IKSSNVENLKSAIFNSIDKAPSFQIKNFYEQFYQD---ILEYHYTDFRDREEDIERLIEM 524

Query: 536 TLRNEQNSYSSLQELISEL---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
               +      +++ ++++   E          S +  +V + T+H AKGLE  VVF++ 
Sbjct: 525 ASYYDN-----VEDFLNDILISEDVRTNESNDFSDDKGKVTLTTIHQAKGLEWKVVFVIG 579

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                F H                                      LK +T +E  RL Y
Sbjct: 580 VNPGDFPH-----------------------------------FLALKDNTLDEEERLFY 604

Query: 653 VGMTRASDQLIICKHSNTSNE 673
           V +TRA D L I   +    E
Sbjct: 605 VAITRAKDILYITHSTLPRRE 625


>gi|196231880|ref|ZP_03130736.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
 gi|196224002|gb|EDY18516.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428]
          Length = 666

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 103/628 (16%), Positives = 202/628 (32%), Gaps = 125/628 (19%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A            E++  +L S  ++    P+     +   +   D+      +      
Sbjct: 117 AAGFAPGFSIMDREDQQDMLDSVIVSAGIDPKDKRFPKG--EVLADVFSFAINTGRSIDD 174

Query: 110 -IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            + +++  +  F   +A           YEE K+    LDF+DL+  T  +L+K      
Sbjct: 175 VLVEKYPHFLEFNDKIALAQ------KKYEEKKRAANSLDFDDLLEKTLLMLQKEPA--- 225

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           I  +  ++   +L+DE QDT+ IQ + I  L +            R +  VGD+ QSIYS
Sbjct: 226 IAERYQRQFQFVLVDEYQDTNRIQADFIDILAKL----------QRNVMVVGDDAQSIYS 275

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  K +L   +              + ++  ++RS  DIL V +   +   +     
Sbjct: 276 WRGANFKNILDFPKRYP--------GAKVYKIETNYRSAPDILDVANAAIAGNVHQFKKE 327

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                 +  R +   +   V L +                              +  A  
Sbjct: 328 L-----VAARPAASMKPALVPLGDS-----------------------------NQQALF 353

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I ++              I+  +I VL R    +  +          + I      
Sbjct: 354 VAQRILDLREEG----------IELDEIAVLYRAHFHSMEVQMEL----TRHGIPFSITS 399

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT----QRHETE 464
                +   IKD+ A  +F+++  D+++F  M++  L         ++            
Sbjct: 400 GLRFFEQAHIKDVAAFLKFVVNPRDEVAFKRMVR-LLPGIGARSAEQLWNSVSDALSRGG 458

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIA----QFCSPHDFFTLILGA-KKGRQQFIS 519
            V  +         +K   + + +   +       +   P +    ++ A      +   
Sbjct: 459 EVNFHQLFSPLKVPAKAARMWEQLAHTLDEIAPGGKPHPPAEMIRSVIEAVYDDYLKAKF 518

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
               +  + L    NF+ + E    +   + ++ L      +  A + +   + + +VH 
Sbjct: 519 PNYEQRREDLTTLGNFSKQYESA--ADFLDQLALLTSLDSEV-TATNEDAEMLTLSSVHQ 575

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE  VVF++     +F                                         
Sbjct: 576 AKGLEWKVVFVIWMADGMFPSNRSL----------------------------------E 601

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKH 667
                EE  RL YV +TRA D+L +   
Sbjct: 602 SDEAIEEERRLFYVAVTRAKDELYLTYP 629


>gi|315452622|ref|YP_004072892.1| DNA helicase II (UvrD) [Helicobacter felis ATCC 49179]
 gi|315131674|emb|CBY82302.1| DNA helicase II (UvrD) [Helicobacter felis ATCC 49179]
          Length = 626

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 102/688 (14%), Positives = 201/688 (29%), Gaps = 149/688 (21%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ----TQC 61
           G    ++  L  +  + +    V   N             + ++A  L +          
Sbjct: 29  GAGSGKTKTLTTRLAYLIASKGVPPQNTLTLTFTNKAAKEMQERAGQLLRLCGHTHTQSA 88

Query: 62  IEERFSLLSSFFLTQ-------------KFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
               F      FL +                  K +    I    P   +          
Sbjct: 89  WLTTFHKFGFAFLKEHASLLEQKKFKLVSPEEAKTLSRSAILNLKPGFMDA-DVYLGHAF 147

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           K+  R   +++           +     Y++   K   +D +DL+     LL +      
Sbjct: 148 KMISRIKNHQIDLRNC--YPDIQKAYTIYQDILLKEDRIDLDDLLAIPYALLDR---LPD 202

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     Q    I++DE QDT+ +Q+++++ L           ++ + L  VGD+ QSIY+
Sbjct: 203 LAIYTSQRYAFIMVDEYQDTNPLQFKLLQKLC----------TTHQNLCVVGDDDQSIYA 252

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F GA+   +L  +    +          +I+L  ++RS+ +I+   + + +         
Sbjct: 253 FRGADISNILDFQDQFPQ--------AKVIKLEQNYRSSKEIVKCANTLIAHNTQRHHKR 304

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             +                                 Q+     + DS  + +        
Sbjct: 305 LFTHKP--------------------------NHQDQRLVCRHFNDSQEESA-------F 331

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +  TI   I             +   +I +L R    +  +    R      +I      
Sbjct: 332 LVRTILERIECG----------VAHHEIAILYRLNTLSKGVEESLR----RAQIPYRIVG 377

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVY 467
                    +KDL+A    I    +D   + ++  P      + + KI    + +   +Y
Sbjct: 378 SVGFFGRSIVKDLLAYLHVIHDPCNDEKLLRIINKPPRGLGVNRVEKITRLSQEKGLCIY 437

Query: 468 EYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI-LGAKKGRQQFISR 520
           +   +          G    + +  ++ +                  L       +    
Sbjct: 438 QLYVQGLLDSVLDARGRKGLKTLFDHVQKWQSHKGAGVLDTLLQTFPLDLDCSEDELTC- 496

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                   ++        + ++  +SL +    LEQ      R      N +  M+VH A
Sbjct: 497 --------VESLKIMLEDHFEDRQASLADF---LEQSILEEPR--VKTTNALSCMSVHAA 543

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE  VVF+V      F                                          
Sbjct: 544 KGLEFRVVFVVGFEEGFFP---------------------------------------YY 564

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHS 668
           K+  EE  RL YV +TRA ++L +C  +
Sbjct: 565 KADLEEERRLCYVAITRAKEELYLCSVA 592


>gi|225388765|ref|ZP_03758489.1| hypothetical protein CLOSTASPAR_02501 [Clostridium asparagiforme
           DSM 15981]
 gi|225045172|gb|EEG55418.1| hypothetical protein CLOSTASPAR_02501 [Clostridium asparagiforme
           DSM 15981]
          Length = 609

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 108/562 (19%), Positives = 191/562 (33%), Gaps = 120/562 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + L   YE A +   +LDF+D+++   +L    D  A I     ++  +ILIDE QD
Sbjct: 158 DVFRRLYKGYEAALRGAGLLDFDDMLVMCRELF---DQRADILQAWQRKYRYILIDEFQD 214

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + IQ+EVIR +                LF VGD+ QSIY F GA P+ +L  ++     
Sbjct: 215 INRIQYEVIRMMAL----------PENNLFIVGDDDQSIYRFRGARPEIMLGFEKDYP-- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  I+    ++    +        +              G 
Sbjct: 263 ------GTEKILLDQNYRSTEQIIGAAGRLIDHNKTRFSKDITAVR----------GPGR 306

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             + +                         + +     AR IA  + + +          
Sbjct: 307 SVVAK-------------------------EFADPGAEARAIAAQLRDYVRLG------- 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
              +  +DI VL R       +  +       Y I     D+   L +H   +D++A  R
Sbjct: 335 ---VPYEDIAVLYRTNIGPRRLVEVLME----YNIPFHMRDKLPNLYEHWIARDILAYLR 387

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                    + + ++  P+   S D +          ++ Y+                ++
Sbjct: 388 AAAGDMSRANLLRIVNRPIRYISRDALDGKTISLEAVKSFYQ--------DREWMVERVE 439

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV--LDEFLNFTLRNEQNSY 544
            +   +   +   P      I  A           G   +D   L E L+         +
Sbjct: 440 QLEYDLKNIRTLPPGKAVNYIRKAVGYDDYLREYAGERQLDPEELREVLDQLQE-SAMPH 498

Query: 545 SSLQELISELEQYPPTIKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +SL+E  + +E Y   ++   ++       V +MT+H++KGLE  VVF++D    V  H 
Sbjct: 499 ASLEEWETYMENYRRKLEEQAASRQLRQEGVHLMTMHSSKGLEFRVVFILDANEGVTPHH 558

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                              K    +  EE  R+ YV MTRA D+
Sbjct: 559 -----------------------------------KAALDADLEEERRMFYVAMTRAKDR 583

Query: 662 LIICKHSNTSNEKKSNQRTWYD 683
           L +       ++K++  R   +
Sbjct: 584 LHVYYVKERYHKKQTVSRFVEE 605


>gi|313902120|ref|ZP_07835531.1| recombination helicase AddA [Thermaerobacter subterraneus DSM 13965]
 gi|313467638|gb|EFR63141.1| recombination helicase AddA [Thermaerobacter subterraneus DSM 13965]
          Length = 1488

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 117/938 (12%), Positives = 252/938 (26%), Gaps = 201/938 (21%)

Query: 29   SDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
              +    +   + G P           ++ + L +  +    E    L++         P
Sbjct: 237  RRLAGLAAQCRQPGGPAVWAETLEDDARRLEALARELEGAGWEAAGRLVAQAAGDWPRLP 296

Query: 81   Q----KNIITQEINKKSPDLKEKLKKSQDEF---IKIRDRFNTYKMFKSTLASLTLAKYL 133
            +    ++ +   I K    +K++++                +  ++       + L +  
Sbjct: 297  RNPQSQDPMHARIQKGRNQVKDQVRDLAQGMWSRAPAEVAADLARLQSYVQTLVDLCRDF 356

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA------WIRYKIDQEINHILIDEVQD 187
                + AK+   ++DF D+      +L   +  A       +  ++ +    +L+DE QD
Sbjct: 357  ARSLQAAKRDRGLMDFADMEHYALQVLADPEAPAGILRPSPVARELRRFFQEVLVDEYQD 416

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK- 246
             + +Q  +++ +  D          P  LF VGD KQSIY+F  AEP   L   R     
Sbjct: 417  INPLQDAILQLVAGD------GEEVPFNLFMVGDVKQSIYAFRQAEPAIFLARYRAYPPA 470

Query: 247  -------------------------------------RATNAGQKFSIIELPLSFRSTAD 269
                                                     A  +   I+L  +FRS   
Sbjct: 471  PGPGDAAGGGASGGGAAPARGPETAGGAAGVEPPGAGDPEAASGRGWRIDLNANFRSRPA 530

Query: 270  ILTVVDKVFSIP--ENAQGLSEDSTTTIRHRSSRIGQV---------------------- 305
            +L  V+ +F         GL+ D    +   +                            
Sbjct: 531  VLAAVNDLFRRIMVPELGGLAYDEEARLNPGAPYPDLPPGASGGEAPVEVYLLERKPEAL 590

Query: 306  -----------------------------GTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
                                         G          +  ++     E      +  
Sbjct: 591  DEDWPDRLEGGAGFDPAGSLPPGTAGARTGGTGTRRADPEETPAEPPAGDEDDGLSVEEA 650

Query: 337  PQESSASILARRIAYTISNMIGT--------DTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
               ++    AR +A+ I  ++                   R ++ +D++VL+R      L
Sbjct: 651  ADLTALEQEARLVAWRIRELVEGTGRQPPLLIWDPEQNAYRPVRYRDVVVLLRS---ARL 707

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                   + +   + V    R        ++ ++AL + + +   D++   +L+SP+   
Sbjct: 708  RASTFVEVLDREGVPVYSRSRTGYLVAPEVEVMLALLQVLDNPRQDIALAAVLRSPVVGL 767

Query: 449  SEDDIFKICTQRHETETVYEYIQKFANCGISK---------------------------- 480
               D+ +I              +       ++                            
Sbjct: 768  GARDLARIRLAGPGLSFYEAACRVAGWDPEAEAPVGAAGQDLEGLSPSQDAGSAAHGRSA 827

Query: 481  -------------------------FQHVIKYIHEL---IHIAQFCSPHDFFTLILGAKK 512
                                        + +++ +L      A+          +     
Sbjct: 828  AGVDAGASTTVREAGGDGEAAQDPLAARLRRFLADLSRWRSAARRYPLSRVIQQLYDETG 887

Query: 513  GRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHS 566
                      G +    L+   +   + +Q +   L   +  +++            A  
Sbjct: 888  ILAYVSGLPAGEQRRANLEALRDRARQFDQFARQGLFRFLRFIDRLRERGDDLGTAPALG 947

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
             N + VR+MT+H +KGLE PVV + D G +           I   L     +     + +
Sbjct: 948  ENDDVVRVMTIHQSKGLEFPVVVVADLGVEF--QFDRGHALIHRDLGLGLKVADPDLRIR 1005

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
              +     +    +  T  E  R+LYV +TRA ++LI+   +       +          
Sbjct: 1006 YPSLAYEAVRTQQRLDTLAEELRILYVALTRARERLILVGSARDLPASAARWWAAAGGAL 1065

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK-----IPK 741
                     + ++           A      HP+  PL +       ++          +
Sbjct: 1066 AGGDRPLPAEAVEGATRYLDWLGPAL---IPHPDAAPLRQLAMAPSPLEPAAGSEGLARE 1122

Query: 742  KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
               S  +  +       P                    
Sbjct: 1123 GWTSRWRWTVWLRPPATPGAAAGPSAVPGPQDPESIHA 1160



 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 27/317 (8%), Positives = 80/317 (25%), Gaps = 46/317 (14%)

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            +      + +          +             +           + + +      N  
Sbjct: 1172 VAPAPPGTGQGTGGTPAPSWLEPLVRGQPLPAGAVDGPAVEALRRRLRWRYPYAPLANRF 1231

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL---LSDNQTF 780
             +R  +  +  D+ +                  L+ +      +          +     
Sbjct: 1232 AKRSVSELKGQDDPEWQAYALPADLRRGLRQPRLHWNGTPPGAEPARPDEPATAAAVTGA 1291

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW--PAKEYKNLLLSITRLLENPMMT 838
             RG   H++LQ +       R++      +  A+    PA+     + ++ R    P+  
Sbjct: 1292 ARGTATHRVLQHLDLAGPMDRRSIERQIESLVARRLLAPAEAAAVDVAALARFFAGPLGR 1351

Query: 839  TAMSC--DSYSEVSVSGKINC-------------------------------------PK 859
              +      Y E   +  +                                         
Sbjct: 1352 RLLHRPDRVYREWMFTLGVPAVEMYPDLVPALEAAAQETGVQEAGAEKAGRMPARSVPAG 1411

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
              +++ G +D     +  + + ++KT     + IE +   +  Q+  Y + L +    + 
Sbjct: 1412 DLVVVQGIVDCFVDEEDGLLLLDFKTDEPRQRSIEQLAAFYAGQVRFYRRALAEI-TGRP 1470

Query: 920  LV-CLLIYVSEPKVFII 935
            +    L +++      +
Sbjct: 1471 VKEAYLCFLATGDAVPV 1487


>gi|32267142|ref|NP_861174.1| putative recombination protein RecB [Helicobacter hepaticus ATCC
           51449]
 gi|32263195|gb|AAP78240.1| putative helicase [Helicobacter hepaticus ATCC 51449]
          Length = 971

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 125/836 (14%), Positives = 255/836 (30%), Gaps = 149/836 (17%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
             +    ++E +K+   +   + +K                E+  +   +L F+D+++  
Sbjct: 265 LSQFDDVREEILKLLHLYFIQREYKIFTWIKRFIYIFKQAKEQEIRAKNLLGFDDVMLKN 324

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +LL +     +  +++D++I HIL+DE QDTSL+Q+++++ + E+   G+      R++
Sbjct: 325 YELLHQNIERDFFYFRLDEKITHILLDESQDTSLMQYQILKPIIEEIKSGEG-RIGDRSV 383

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           F VGDEKQSIY F G+         +   +             L  +FRS+  ++   + 
Sbjct: 384 FMVGDEKQSIYMFRGSFAGVFEEAIKDFHQE-----------NLDYNFRSSPRVIAFNND 432

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           VF                  H+ S I   G V++  Q +   D                 
Sbjct: 433 VFQ-----SCFPYYLPQQYPHKPSHIKSNGYVRVLSQCMDNEDLG--------------- 472

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                   L ++I   +  ++                 DI +L  K  D   +       
Sbjct: 473 --------LHKQICAELEILLQNGANED----------DIAILTFKNDDVLSLKEYISMQ 514

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                I  V      L     +K L+    FIL      +      S     S   +++ 
Sbjct: 515 IPHLNI--VTETNSSLFQRKEVKILICALEFILLYSKIQNGEYEADSYKQLLSTKKLYEK 572

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              +   +                   +I  I  L+ +     P +   L++        
Sbjct: 573 KIIKLLGKPYMCSN------------RLIDEIKTLM-LPSDTPPSEAIFLLIEELDI--- 616

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                         +FL  +             +   L+  P  +  A   N+  V+IMT
Sbjct: 617 --------AQAASMKFLELSCDY--------MRIEEFLDALPQMVCAAPIQNNKGVKIMT 660

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE   V L D  S     +  +             +   I   +S +      +
Sbjct: 661 IHKSKGLEFEYVILCDKLSGF--QQGREVFIYEYEDIQIKQMYYKIAGRESFDKEYQKAL 718

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
           +  K   ++E   +LYV  TRA   L I +    S  +  N     D +           
Sbjct: 719 QAHKMREKQEEYNMLYVAFTRAKYGLSIVQKYKGSAFEILNLTPCCDEIAYIS------- 771

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                                          +   + +     P+ L   + +   +   
Sbjct: 772 ------------------------------PKQSVKNISSIHTPQVLMHNMPSFGRQIAF 801

Query: 757 LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC-TKNAKL 815
           +       K +               G  +H + ++       ++   I S    +    
Sbjct: 802 IR----QEKDERKGIFDTQQWHNIIFGHALHSVFELYLGYKMTQKD--IQSILYNRYGFA 855

Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
                    +      +++                +  +++   K+ +   RID +   +
Sbjct: 856 LSLSSIIQAMQYAINCIQSKKFIEMRKGKH-----IVCEVSYIAKEHL--YRIDTLLYDE 908

Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL-----KDSYPNKSLVCLLIY 926
           +   + +YK+        E        Q+  Y + L     ++    K++   ++Y
Sbjct: 909 KEWIVLDYKSSATNIDMQEE-------QIREYMRFLFSLNKQEKQQEKNIRGFIVY 957


>gi|149278325|ref|ZP_01884463.1| UvrD/REP helicase domain protein [Pedobacter sp. BAL39]
 gi|149231091|gb|EDM36472.1| UvrD/REP helicase domain protein [Pedobacter sp. BAL39]
          Length = 1080

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 135/926 (14%), Positives = 286/926 (30%), Gaps = 103/926 (11%)

Query: 25   YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
               +  +  + +  +         ++  L           +   L+         P++  
Sbjct: 237  ELALRALTVFEAADISPDQLKGKSRSPLLAIQKVADGDFSKIESLAKLI----NEPEEWF 292

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
                      +L   L K +D ++     +   + F   L  L L + +    +  ++++
Sbjct: 293  KPGADPGLYGNLNPLLAKLRDTYVAELPAYILAQAFNKNLYYLRLMQEMAVLLKTYRQES 352

Query: 145  CVLDFEDLIINTNDLLK-----KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
              L    LI +  +LLK          A+I  K      H L DE QDTS  QW   R L
Sbjct: 353  GNL----LISDAQNLLKGITGSDDSNPAFIWEKTGSRYRHFLFDEFQDTSANQWGNFRPL 408

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK-RVLREKRINQKRATNAGQKFSII 258
              +       +        VGD KQSIY +   +      + K+   +         +  
Sbjct: 409  LRNAMA--EANGRLIDHLIVGDVKQSIYRWRNGDWNILHQQAKKDIGELY------VTAA 460

Query: 259  ELPLSFRSTADILTVVDKVFSIPE----NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             L  ++RST +I+   + +F             + +  +          + G  ++   V
Sbjct: 461  SLEENYRSTENIIRFNNMLFKALPLLMQRRLNEAIEGQSANAALQQWWQERGFDRIITDV 520

Query: 315  VSQHDSQCNP---QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              + + Q  P   +         S   E ++   +   A  I  M+ T       ++R  
Sbjct: 521  YQEAEQQLTPKTAEGGCIDISVVSTDAEGASLGRSGFKAEAIRRMVLTLKRLIVEEQR-Y 579

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL-S 430
            QA D  VLVR   +   +           +I+V+  +  ++ ++ A+K ++     +   
Sbjct: 580  QAGDACVLVRSNAEAVAVVDALME----NQINVISGEALLIENNTAVKIIINTLMVMAGL 635

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              +   +     S       + +  +     + + ++E            ++  ++    
Sbjct: 636  PNNTALYKANCISLYAQLKGEQVIPVHWFDLKEKGLHELSGILPAVLCEHWKSWMQQ--- 692

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       +    ++GA    Q   S         L    +      +     +   
Sbjct: 693  --------PLPELLEKMIGAYGLDQPSQSAHLP----YLFALRDLAGNFARQGEKGITSF 740

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF-SHKHIKKMHIM 609
            +S  E+         S + + V+++T+H +KGL   VV +      +      I  +   
Sbjct: 741  LSYWEEEGRRKTLPSSESTDAVQVITIHKSKGLAFKVVMVPFCNWDINGKANSIFWVPAA 800

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             +                  + V+            +   +LYV  TR  + L +     
Sbjct: 801  NTPYHQLQSIPLKYNKDLAQSAVAIPYYEELLYNNMDSLNMLYVATTRTKEYLYMTCP-- 858

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
               +K     T  D++  +           L +     +      + + PE   L    T
Sbjct: 859  --GKKTDTVSTIGDLLSLTLGEQLNEDGAFLIDDPVLKKKGPPSVAANRPELLNLHEYPT 916

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
              +L +                           +   K     LL+ N+    G I+H++
Sbjct: 917  SGRLSE-------------------------VFNNDLKRRELELLTGNEAGRHGSILHEV 951

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYS 847
            L     L E   +  + +   +        E   L   +  ++++  +   +  S ++ +
Sbjct: 952  LARAADLVEA--EAVLNTMLNEGYFKVD--ELGGLKQQVYHVMQHLELQELLRSSKETVN 1007

Query: 848  EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK-THHHVPQEIEHIPYTHIAQLSI 906
            E S+   I+   K      R D++ IS   + + +YK T              HI Q+  
Sbjct: 1008 EKSI---IDIDGKSY----RPDKVLISGSEVTVIDYKFTSKES--------KAHIRQVHG 1052

Query: 907  YEKILKDSYPNKSLVCLLIYVSEPKV 932
            Y  +L      + +   L Y    ++
Sbjct: 1053 YRNLLLAM-GYRQVKTYLFYALSGEL 1077


>gi|197303176|ref|ZP_03168218.1| hypothetical protein RUMLAC_01899 [Ruminococcus lactaris ATCC
           29176]
 gi|197297716|gb|EDY32274.1| hypothetical protein RUMLAC_01899 [Ruminococcus lactaris ATCC
           29176]
          Length = 609

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 116/599 (19%), Positives = 207/599 (34%), Gaps = 128/599 (21%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           + LK    E  KI+++    + F S      + + +   YEE +K+   +DF+D+++   
Sbjct: 128 DFLKDIAFEIGKIKNQRIRPEEFISEKCEAAVFRQIYREYEEQRKRRRKIDFDDMLVLCF 187

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            L         +     ++  +ILIDE QD + IQ++VIR L              R LF
Sbjct: 188 QLFLS---RPDVLRGWQKKFRYILIDEFQDINQIQYDVIRMLAL----------PERNLF 234

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           AVGD+ Q+IY F GA+ + +LR K+             S I L +++RST++I+T   KV
Sbjct: 235 AVGDDDQAIYGFRGADSELMLRFKKDFP--------DASQILLGVNYRSTSNIVTNSLKV 286

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                               ++ R G                                + 
Sbjct: 287 IMHNTRRYEKE--------LKAERKGGPCL---------------------------HIQ 311

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +    +  A  IA  I   I + T          +A+DI VL R   D   +       K
Sbjct: 312 EVKDVNEEAEYIAGEIEKSIRSGT----------KAEDIAVLFRTHTDARPVVEALLARK 361

Query: 398 NDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
               +     +    L +H   KD+ A  R  +        + ++  P    S D +   
Sbjct: 362 ----LPFEMKEHLPNLYEHFIAKDIQAYFRLAMKCAGRQDLLQVMNRPKRYLSRDSLQG- 416

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             +R   E + +Y +             I      + + +  +P+   T +       + 
Sbjct: 417 --KRASFEILRDYYRDKDWMT-----DRIDQFEWDVKMMEKMTPYAAITYLRKRVGYDEY 469

Query: 517 FISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-- 568
                        ++ ++L E        E     +++E  S +E+Y   +K+  +    
Sbjct: 470 LKEYCISRHLKITDLSEILSELEEAAKPYE-----TMEEWFSHIEEYTEALKKRETGRNT 524

Query: 569 -HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               +R+MT+H AKGLE   VF++        +K  +K   +                  
Sbjct: 525 PEKGIRLMTIHAAKGLEFDTVFVIQANEGRIPYKKAEKAEEIEEE--------------- 569

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                                RL YV MTRA ++L+         ++    R   +++ 
Sbjct: 570 --------------------RRLFYVAMTRAKNRLVFSYVKIKGGKEILPSRFVDELLE 608


>gi|161869731|ref|YP_001598898.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis 053442]
 gi|161595284|gb|ABX72944.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis 053442]
          Length = 1204

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 132/940 (14%), Positives = 274/940 (29%), Gaps = 164/940 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L +YLN    E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +   ++R              S+   +   
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAE------------SRLSPKRPA 515

Query: 325  QQESWTSYFDSL--PQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVR 381
             Q  W    D+    ++      A   A  I+  +        N K   +Q+ DI VLVR
Sbjct: 516  VQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGYPLQSGDIAVLVR 575

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +++   +      ++  V   R  +        L AL  F L      +   +L
Sbjct: 576  THNEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVL 631

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +F +    +        E     E                   +             
Sbjct: 632  TSGIFGYDAQQLHDFNQNESEILHWAE--------------SARTALDNW----NQYGIF 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPP 559
                          + +SR     +    + L        +  + ++L + + +      
Sbjct: 674  AAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAD 733

Query: 560  TIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        ++ + V+I+T+H +KGL+ P+V+         +     ++    +   
Sbjct: 734  NNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRT 793

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +               +  D  K        E  RLLYV +TRA +QL I    +T+   
Sbjct: 794  ELLAKAQ---------LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTAD 844

Query: 675  KS---------------------NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                                    ++    M+  ++                +D      
Sbjct: 845  TPLAYLIEGSPQDSRETVRQTYAQEKDGIAMLKRNWRRLADNAPAGTDFVFTEDAPPPAA 904

Query: 714  WSTHHPENTPLEREE---------------TIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            +  +  +                       T+ +        ++   P  +         
Sbjct: 905  YRGNADQTAEFAANSIPERGFRFVRHTSFTTLSRHTQTPDGSEEDACPSLDAAETSVPAM 964

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNA-KLW 816
            PS  +T   ++  S+ +  +    GL +H++L+          ++ FIT    K   +  
Sbjct: 965  PS--ETPTASDGISIHNFPKGTQAGLCLHEILENFKFGQAAAGQETFITDKLKKYGFEEI 1022

Query: 817  PAKEYKNLLLSITRL----------------------------LENPMMTTAMSCDS--Y 846
                   +  +  +                                  +    + D    
Sbjct: 1023 WLPAVAEMAEACQKTPLTGAYGLSDILSECRCPEMGFTLHTEDFGLKRLRDWFARDDIRL 1082

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIE 894
             EV  + +  ++    +  ++G ID +       I + +YK++H             +  
Sbjct: 1083 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGTDASAYTQQAMDEA 1142

Query: 895  HIPYTHIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
               + +  Q  IY       +  +     ++    +++  
Sbjct: 1143 VAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|15829239|ref|NP_326599.1| ATP-dependent helicase PcrA [Mycoplasma pulmonis UAB CTIP]
 gi|14090183|emb|CAC13941.1| ATP-DEPENDENT HELICASE PCRA [Mycoplasma pulmonis]
          Length = 741

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 106/618 (17%), Positives = 218/618 (35%), Gaps = 118/618 (19%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
           +       +  +   +     +     +   Y E  K+N  +DFEDL++  N L +    
Sbjct: 164 KLSDFVTNWEIFDRKEIDEDIMEKMDLVYQSYIEYTKENNFVDFEDLLLLVNHLFETNP- 222

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +R K + +  ++L+DE QDTS +Q+E+++ + ++ +           L  VGD  Q+
Sbjct: 223 --KVRKKWESKFEYVLVDEFQDTSPLQYEILKVIAKNAY-----------LTIVGDPDQT 269

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           I+ +HGA+    L  ++   +           I+L  ++RST  IL   +K+ +  +   
Sbjct: 270 IFWWHGADINIFLNFEKDFPESM--------KIKLEQNYRSTKKILDAANKLIAKNKRRL 321

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             +                                +   +   +   F+   +       
Sbjct: 322 TKNLF----------------------------TEKEEGEAIEFNHAFNIDAE------- 346

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           AR +   I+ +              +Q K+I++L R    +  +         +++I   
Sbjct: 347 ARWVVTKINMLKKQ----------KVQLKNIVILYRSSHVSRALEQQLVKENINHQI--- 393

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETE 464
             +     +   IK+L+   + I S  + L+F   L   + + ++ D+ + +        
Sbjct: 394 -VNGTKFFEKKEIKNLIYFLKTIYS-ANTLAFYNTLLFFVRSLAKKDLDEVLHQAAAAKL 451

Query: 465 TVYEYIQKFAN------------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           ++Y+YI                   IS  + ++K+   L +     +    F   L   K
Sbjct: 452 SLYKYIITRIKTENLGLSAKTRKETISLLKTIVKFKKLLKNEKHEANYSWIFDAFLKEVK 511

Query: 513 GRQQFISRFGNEV--IDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANH 569
                     +E    D + EFL    + ++ + SS L +   ++  Y    +   SA +
Sbjct: 512 FYDLINYDRDDENAIQDNVYEFLTLLQKWQEENPSSELSKFFEDIALYS--NRIDESAGN 569

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           N + +MT+H AKGLE   VF++     +                D               
Sbjct: 570 NFISLMTIHNAKGLEFDYVFIIGLNENILPSAKALYSKDGSINYD--------------- 614

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                          EE  R+ YV +TRA  ++ I          K  ++T   +     
Sbjct: 615 -------------KLEEERRIAYVALTRAKTKVFISDARGIDPYSKEPKKTSRFLTEMGI 661

Query: 690 HNDERVKKIKLTNSINKD 707
             ++ V++I    +I ++
Sbjct: 662 SLEDHVQEINSITNITQE 679


>gi|331085225|ref|ZP_08334311.1| hypothetical protein HMPREF0987_00614 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408008|gb|EGG87498.1| hypothetical protein HMPREF0987_00614 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 613

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 103/607 (16%), Positives = 194/607 (31%), Gaps = 120/607 (19%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
             +  +  D KE L+    E  +I++   + + ++S+  S  + + +   YE  +K    
Sbjct: 117 AGMELEIEDEKEFLQGIASEIGQIKNNRLSLEEYESSNCSDQMFRQIYEEYERRRKLLKK 176

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++   +L +K      I     ++  +ILIDE QD + +Q++VIR L       
Sbjct: 177 IDFDDMLVLCYELFQK---RPDILQMWQKKFQYILIDEFQDINQVQYDVIRMLAL----- 228

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    LF VGD+ QSIY F GA P+ +L   +               I L +++RS
Sbjct: 229 -----PENNLFIVGDDDQSIYRFRGARPEIMLGFSKDYPN--------AKSIILDVNYRS 275

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  +++   +V    +N       +                V+                 
Sbjct: 276 TKAVVSAARRVIERNKNRYQKEIITVNEQGDNVHIQEVRHPVE----------------- 318

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              +  +   I+  +   T          +   I VL R   + 
Sbjct: 319 ------------------ESHYVREQIAKAVAAGT----------EPSQIAVLYRTNTEP 350

Query: 387 PLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                       +Y I     +    L +H   +D  +  R  L   D   F+ ++  P 
Sbjct: 351 R----ALVETFMEYHIPFQMKEHLPNLYEHFIGRDFQSYMRMALGGRDRGDFLMIMNRPN 406

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
                D + +                +            I  +   + +    +P+    
Sbjct: 407 RYIGRDSVDRGEISFEN--------LRKYYMEKDWMVDRIDQLEVDLKVISRMTPYAAIQ 458

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKR 563
            I     G   F++ +  +    L++        E+    + +++E    +E+Y   ++ 
Sbjct: 459 YI-RKSVGYDLFLNEYAIKRKMKLEDLQELIREMEERAKEFKTIEEWFDHIEKYTEELRM 517

Query: 564 AHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  N N V +MT H AKGLE   VF++     V  +K  +    M           
Sbjct: 518 QAVTRTENRNAVSLMTFHAAKGLEYDTVFIIGANEDVTPYKKAELPEEMEEERRM----- 572

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                          YV MTRA   L+I      + +     R 
Sbjct: 573 ------------------------------FYVAMTRAKKHLMISYVREKNGKAMEQSRF 602

Query: 681 WYDMVYD 687
             ++  +
Sbjct: 603 LGELFQN 609


>gi|116328254|ref|YP_797974.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330978|ref|YP_800696.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120998|gb|ABJ79041.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124667|gb|ABJ75938.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 665

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 113/641 (17%), Positives = 205/641 (31%), Gaps = 128/641 (19%)

Query: 41  TGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKL 100
           +G          L          +   +       + F   K+      N+    +  ++
Sbjct: 91  SGVLRKFAPVLGLSSGFTILDESDTLDVFQFLRNEKDFGKTKSRFP--SNETLISIYGEI 148

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           + +      + ++       + T         +   Y+  K +  +LD++DL+  T DLL
Sbjct: 149 QNTGRVLQTVLEKDYPL-FLQRTKDISQ----IFEDYKSYKTERSLLDYDDLLYFTRDLL 203

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                   +R  + ++   I++DE QDT+ +Q  +   L  +             L  VG
Sbjct: 204 TNHPG---VRNALSEKYKFIMVDEFQDTNKVQAHIACLLASE----------HSNLMVVG 250

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ Q IY+F GA  + +L   +I              I L  ++RST  IL + + V   
Sbjct: 251 DDAQCIYTFRGASVRGILDFPKIFSN--------TKTIFLEKNYRSTTAILNLANAVLQN 302

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                                                     N    +   + D L +  
Sbjct: 303 FSEKYDKYLF----------------------------TDNENGSIPNVLQFEDELEE-- 332

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  IA           I    K+  I  K + VL R   ++  +  +        
Sbjct: 333 -----AEGIAE----------ILLQKKEDGIPFKKMCVLFRAGWNSNQLELVL----AKR 373

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDD--IFKIC 457
            I  V        +   IKDL++  + +++  D +S++ +LK  P    S+ +  + KI 
Sbjct: 374 NIPFVKFGGRKFIETAHIKDLLSFLKVLVNPLDSVSWIRVLKLIPGIGNSKANGILDKIR 433

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT--LILGAKKGRQ 515
                 E +    +   +  IS   H+ +   E     +  +  DF     +L  K    
Sbjct: 434 KSSGSFEVLLGENETAIDKYISPLYHLYQKHRETYSEVKKVT-SDFIDYYRVLLEKNY-- 490

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                      + LD  L F+L+   +    L +L  +         +   A  + + + 
Sbjct: 491 ----DDSKRRSEDLDSVLGFSLKY-TSLGDFLSDLTMDHASLSLDKIKPDDAETDLLNLS 545

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH+AKGLE  +VF+++    VF                                     
Sbjct: 546 TVHSAKGLEFDLVFILNATEGVFPSS---------------------------------- 571

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
               K +  EE  RL YV +TRA  +L   + S   +    
Sbjct: 572 ----KNTDTEEERRLFYVAITRARKELYFTRPSLAHSRSGP 608


>gi|325133701|gb|EGC56357.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M13399]
          Length = 1204

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 131/942 (13%), Positives = 267/942 (28%), Gaps = 168/942 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L  YLN    E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGYDLNALEEAEEATIIRLQLDLIGYLNRSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +   ++R              S+   +   
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAE------------SRLSPERPA 515

Query: 325  QQESWTSYFDSL--PQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVR 381
             Q  W    D+    ++      A   A  I+  +        N K   +Q+ DI VLVR
Sbjct: 516  VQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVR 575

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +++   +      ++  V   R  +        L AL  F L      +   +L
Sbjct: 576  THNEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVL 631

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +F +    +        E     E                   +             
Sbjct: 632  TSGIFGYDAQQLHDFNQNESEILHWAE--------------SARTALDNW----NQYGIF 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPP 559
                          + +SR     +    + L        +  + ++L + + +      
Sbjct: 674  AAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAG 733

Query: 560  TIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        ++ + V+I+T+H +KGL+ P+V+         +     ++    +   
Sbjct: 734  NNSGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRT 793

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +               +  D  K        E  RLLYV +TRA +QL I    ++    
Sbjct: 794  ELLAKAQ---------LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTAD 844

Query: 675  KSNQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                     +            +   D      +    +  +     +++       P  
Sbjct: 845  NPLAYLIEGLPQDSRETVRQTYAQEKDGITMLKQNWRRVADNAPAGTDFAFTENAPPPAA 904

Query: 726  REETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILN 758
                  Q  +                                ++   P  +         
Sbjct: 905  YRSNAGQTAEFAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVAAM 964

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP 817
            PS  +T   ++  S+    +    GL +H++L+          ++  I     K    + 
Sbjct: 965  PS--ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYG--FE 1020

Query: 818  AKEYKNLLLSITRLLENP-------------------------------MMTTAMSCDS- 845
                  +        + P                                +    + D  
Sbjct: 1021 EIWLPAVAEMAEACRKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDI 1080

Query: 846  -YSEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------E 892
               EV  + +  ++    +  ++G ID +       I I +YK++H             +
Sbjct: 1081 RLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICIIDYKSNHLGADASAYTQQAMD 1140

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
                 + +  Q  IY       +  +     ++    +++  
Sbjct: 1141 EAVTHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|320451177|ref|YP_004203273.1| ATP-dependent DNA helicase [Thermus scotoductus SA-01]
 gi|320151346|gb|ADW22724.1| ATP-dependent DNA helicase [Thermus scotoductus SA-01]
          Length = 872

 Score =  220 bits (561), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 129/863 (14%), Positives = 249/863 (28%), Gaps = 137/863 (15%)

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
             L   L+ S     + R     ++        L L + + + Y    ++   L   DL 
Sbjct: 122 KGLDPALEGSLLALYRKRSLAGAFRALPGAEGLLELFQEVLSGYHRRTRE--ALGPGDLE 179

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
                LL+       +     +   ++L+DE QD + +Q    R L            + 
Sbjct: 180 ALALRLLEHPQAVRRVV----ERFPYLLVDEYQDVNPLQGRFFRVL----------EEAG 225

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             + AVGD KQSIY F  A  +   +  +              +  L  + R    +   
Sbjct: 226 VQVVAVGDPKQSIYLFRNARVEVFRQALKE----------AAEVHRLAETRRHAKAVARF 275

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
           ++              +    +  R     + G V++   V      +            
Sbjct: 276 LNCFVE----RFFPEPERVPVVPLR----EEEGLVEVHWVVGEGGLPEK----------- 316

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                       A  +   ++ + G               +++ VLVR R   P +    
Sbjct: 317 --------REKEAALLVERLAALQGQGHA----------YREMAVLVRSRASLPFLERAF 358

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL-----SQEDDLSFVCMLKSPLFNF 448
           R L     +  V            ++D+    R  L     S E+ +S +  L+ P    
Sbjct: 359 RAL----GVPYVLRRGQSFFKRPEVRDVYHALRLALLEGPPSPEERISLLAFLRGPFVGV 414

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
               + +          +                 V   +  L  +A          L+ 
Sbjct: 415 DLGQVEEALQAEDPLPLLP--------------PEVRMRLDGLKTLAGLRPLEALKALVR 460

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT-IKRAHSA 567
                 + F+ R        LD  L          +  L+ L+  L+             
Sbjct: 461 D-----EVFLRRLSRRARANLDTLLLLAAE---ERFPDLEALLEWLKVRAEDPETSELPE 512

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               V+++TVH AKGLE PVV + D             + +   +  +            
Sbjct: 513 GGEGVQLLTVHAAKGLEWPVVAVFDLARHEGGRSEPVLVGLDGEVALEG----------- 561

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                 +L + L ++ +EE  RLLYV ++RA D L++    +                  
Sbjct: 562 -TEGYQNLRRTLARAQEEESLRLLYVALSRARDVLLLTGSLSER---------------- 604

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                     + L       + + +          P        Q               
Sbjct: 605 --PGPWAEALMDLGLGPADQDPLVHRHPLAGLPPLPSPPLLPEPQPPAPYAEHLIPSKRF 662

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
               +                 LE+          G ++H  L     L           
Sbjct: 663 PPVFSPSAYRKGEGEPLALSQALEAETLPEYPRALGTLVHYALAR--NLDPGDEGAMRAL 720

Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEVSVSGKINCPKKDIII 864
              + A  +P +E K LL  +  LL N          + ++  E      +  P    + 
Sbjct: 721 LLQEVAFPFPEEEQKRLLAEVRLLLWNHRRMLGEVLPALENREEDHAELPLVLPLAGTVW 780

Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
            G +D++       ++ +YKT   +       P  +  QL++Y + ++ ++  ++    L
Sbjct: 781 YGVLDRLYRVGDRWYLEDYKTDQRMA------PEHYRLQLALYWEAVRRAWGVEA-EARL 833

Query: 925 IYVSEPKVFIIPQNKLNKAFAEI 947
           +Y+   +V +    +L +A  E+
Sbjct: 834 VYLRHERVHVFSPEELQEALREL 856


>gi|229010620|ref|ZP_04167821.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides DSM 2048]
 gi|228750664|gb|EEM00489.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides DSM 2048]
          Length = 688

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 103/658 (15%), Positives = 206/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   +         +++ N  K  K+        K +   +EE K+++  +
Sbjct: 165 ILKELRLKDDYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRHNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++    +L+     A +  ++ +  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLEMYYMLENN---APLLTQLQERFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVRNDGIQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  I+ ++   R +L      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIRPVLDHLRLVLEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFINEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|289450290|ref|YP_003475636.1| putative ATP-dependent nuclease subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184837|gb|ADC91262.1| putative ATP-dependent nuclease subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 1448

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 121/714 (16%), Positives = 225/714 (31%), Gaps = 96/714 (13%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  +  +   + +  +     +      +L++  G  +  K        +          
Sbjct: 328 SAQDDVDAANETMKAILNTIEAGRKNCAALALRAGGKSPDKAEFIYLYRTFAAEPLAW-- 385

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            ++S   +     QKN +   +     D++       D     +           T    
Sbjct: 386 -INSAEYSVTEAEQKNFVFPGVRPFGADMEAIEADLTDMLPVWQALAALLLFLDQT---- 440

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    Y   K K   +DF D+      +L+       +R         + +DE QD
Sbjct: 441 ---------YASYKLKQNAVDFGDMEHYALRILENP----AVREYCQNFYQEVYVDEYQD 487

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ-- 245
           TS IQ  ++++L+++             +F VGD KQSIY F  A P      +   +  
Sbjct: 488 TSSIQESILQALSKN------------NVFRVGDIKQSIYRFRYANPDIFAALESELEMS 535

Query: 246 ---KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                   A     ++ L  ++RS  +IL V + VFS   N +    D  T  +  + R 
Sbjct: 536 TAPAAVPGAAPAGRLLRLNNNYRSVPNILGVANFVFSRLMNGEDGEIDYRTKHQFVAKRE 595

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                               +  +    +  + L + +S ++   ++   +         
Sbjct: 596 TTADPRVKVIYTADGRGDDLSEAENESLATDELLRKPNSVTLECVKLVDELRKDAAQG-- 653

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   I  +D+ +LVR+     +I+         Y I V  N          +  + 
Sbjct: 654 --------IAWEDVAILVRRNNTAAVISKWLE----RYGIPVEKNMPQEWYKTSEVLQVE 701

Query: 423 ALGRFILSQEDDLSFVCMLKSPL--FNFSEDDIFKICTQRHETETVYEYIQKFANCGIS- 479
           AL + I ++  D   + +L+S L  F F+E+++  I     +  +     + + +  +  
Sbjct: 702 ALLQLIDNRRQDYPLLAVLRSNLHPFGFTENELVAIRLYFRQNASPELQYRSYFHTAVEF 761

Query: 480 -------------------------------------KFQHVIKYIHELIHIAQFCSPHD 502
                                                + +    ++     +A   S  +
Sbjct: 762 YLADSTHEIRAEAESAVAPDSKSEAEPAAAPDSDLKHRLREFFHWLATWRSLALSTSVPN 821

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               IL +     +            LD  L        N   +L+E +  LE+      
Sbjct: 822 LIAAILQSMDLPAEIKGEELETRQQALDLMLTTAYSYNSNYRHNLREYLKYLEEIRLQAI 881

Query: 563 RAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                     V++MT H +KGLE P+V+L+D G          K  I   L         
Sbjct: 882 LDSEKNAGGGVKLMTYHGSKGLEFPIVYLLDLGCGRSDCPAADKFIIDDKLGLAGLWIDP 941

Query: 622 IPQ----SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                  S+    ++   I    K+ + E  RLLYV MTRA D L I    +  
Sbjct: 942 NADDAAQSRRSTPLMDAEILAEHKAEKAEQIRLLYVAMTRAKDSLRIITAFDEK 995



 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/488 (8%), Positives = 128/488 (26%), Gaps = 82/488 (16%)

Query: 515  QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
             + ++    E  + +   L   +   ++S   +     ++ +     +     + N V I
Sbjct: 958  AEILAEHKAEKAEQIR-LLYVAMTRAKDSLRIITAFDEKIGETEWKKQPEFWQSKNAVDI 1016

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
                  + + +      D  +  F+      +  +  + D          S    +    
Sbjct: 1017 SDAAAGQIMVNRTKSHADMLNLAFNS-----LPNIDRMRDLLLAAKPFQLSYGDTSSGKI 1071

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
             +            R+ +V     + +  I  ++  + +  +  ++       +      
Sbjct: 1072 DLATAGTEVPATDCRIEFVFSPVEALEPYIKPNTPANTKPTTEDKSTAAEAIIATEQQTT 1131

Query: 695  VKKIKLTNSI----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              ++  T+++       +       T    + P       + ++ + +       P K  
Sbjct: 1132 ADQLTTTDTVRGQFAAVDQAPTPSKTVDQASVPFTLPADRQDIVLQYQPDPTEIQPAKTT 1191

Query: 751  INEPYILNPSTIDTKGKTN-----------------LESLLSDNQTFNRGLIIHKLLQVI 793
            +      +  + +   +                    E          RG ++H+ ++ +
Sbjct: 1192 VTILSRESERSDEITTREMSMKPDSDTLILDMNFDLPEWPTEKMTGAERGTLLHRCMRKL 1251

Query: 794  FTLP---------------------------------EHKRKNFITSYCTKNAKLWPA-- 818
                                                 +      I     +         
Sbjct: 1252 DFTAMANVTMITPAMAKPSMEQVTIEKVTAATSTLSAQTSPAAAIDKELERQLTYLRERN 1311

Query: 819  -------KEYKNLLLSITRLLENPMMTTAMSC-----DSYSEVSVSGKINCP---KKDII 863
                    E    +  I +   + +    +       + + E   +  +        D+I
Sbjct: 1312 IFTEREYTELGRWIDKIRQFFLSDLFRAMLKAEQTGGNIFRETPFTMNVPDDPRIGTDVI 1371

Query: 864  ISGRIDQISISQQNIFIFEYKTH----HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
            + G+ID      +   + +YKT         Q+ E +   + AQL+ Y K L+ +     
Sbjct: 1372 VQGQIDLWFTDGRKNALVDYKTDCLKEADPEQQDEAVRKRYAAQLNYYAKALEQA-TGLP 1430

Query: 920  LVCLLIYV 927
                +I++
Sbjct: 1431 TAAKIIWL 1438


>gi|154685618|ref|YP_001420779.1| YjcD [Bacillus amyloliquefaciens FZB42]
 gi|154351469|gb|ABS73548.1| YjcD [Bacillus amyloliquefaciens FZB42]
          Length = 761

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 87/618 (14%), Positives = 176/618 (28%), Gaps = 116/618 (18%)

Query: 77  KFTPQKNIITQEIN--KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           K   QK    ++    +   + +  + ++       ++ +  ++              L 
Sbjct: 243 KMEWQKEQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYRLY 302

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
            HYE  K++    DF+D+     +L +       I  +     +HILIDE QD + +Q+ 
Sbjct: 303 EHYERQKREKRQFDFDDMAQGCYELFQS---RPDILAQYQNRFSHILIDEFQDINPVQYN 359

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ +           S    L  VGD+ QSIY+F G+ P  +L  ++            
Sbjct: 360 IMQMIA----------SPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYPA-------- 401

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              I L  ++RS   I++    V    +     +  +     H                 
Sbjct: 402 AKTIYLTANYRSPHPIVSSAHAVVKKNKKRYEKTLSAVKDGVHNP--------------- 446

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                             +D   +       A  I   +   I                 
Sbjct: 447 -------------VMFYPYDEEEE-------ATMIVSDMKEKIQNG----------ASPD 476

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQED 433
           D  VL R       I        +   I    +           ++ ++A      +++D
Sbjct: 477 DFAVLYRTNSAGRAIYERL----HQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDD 532

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
             +   +L  P     +  +  +       +                    IK I     
Sbjct: 533 PDAVKDLL--PALFLKQSALQTLKALSITEDCTMIKALTKLPDLKPFQIGKIKQIVPFFA 590

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             +   P +  T         +    R        +  D L +      +       ++ 
Sbjct: 591 SIRTMKPVEAITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKF-----KTIP 645

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           + ++ ++            + N V ++T+H +KGLE   V+++        H        
Sbjct: 646 DFLAHVDHMRAAEN--LKTDENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFAL---- 699

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                    +  +    +  EE  RLLYV MTRA   L +   +
Sbjct: 700 -------------------------ETARQGDPAPLEEERRLLYVAMTRAMQHLYVSCPA 734

Query: 669 NTSNEKKSNQRTWYDMVY 686
               +   + R    ++ 
Sbjct: 735 YRRGKTARSSRFLEPLLR 752


>gi|291060388|gb|ADD73123.1| ATP-dependent helicase PcrA [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 685

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 94/596 (15%), Positives = 171/596 (28%), Gaps = 145/596 (24%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
             F  +  R +        +       +  A Y    ++   +DF DLI+    LL++  
Sbjct: 165 ASFESVHARVSAPACAARAVLGDRQFAHAYACYHRRMREMGTVDFGDLIMLPVQLLREH- 223

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +  ++      +++DE QD+++ Q+  ++ LT           +   L  VGD+ Q
Sbjct: 224 --QDVAEQLHARWQVVMVDEYQDSNVAQFHFLQVLTG----------AHTYLCVVGDDDQ 271

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY F GAE K +L      Q           II L  ++RST  IL V D V    ++ 
Sbjct: 272 SIYRFRGAEVKNILTFPEFFQN--------TQIIRLEYNYRSTDAILRVADSVVKKNQDR 323

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
            G +  +  T           GT      + +Q +                         
Sbjct: 324 LGKALIAQRT----------GGTKPRLFLLNNQDE------------------------- 348

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A    + I             + R I   D  +L R    +              +I  
Sbjct: 349 EAALCVHLIQE----------ARARGIPYADWAILYRVNAQSLSFEQ----CFLRNRIPY 394

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                        +KD++A  + I++  D+L+   +L  P     E     +     +  
Sbjct: 395 RIVGTLKFYSRAEVKDVLAFLQLIVNGSDELALRRVLNKPPRGIGEKTQDALFVCAQQAA 454

Query: 465 ------TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS------------------- 499
                     ++         K    +  +  L                           
Sbjct: 455 ITDFTTLQSTHLTALGTRARQKVSSFLSLLRALRARMPQAPAAGEEARTSAPPEEPVEER 514

Query: 500 ------PHDFFTLILGAKKGRQQFI---SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                    F ++++      + +       G +    + E +N       +    L   
Sbjct: 515 THDAEGLARFVSVVMEHTGLEEWYRQKDEEEGTQCAVNVQELMNAASLYACSH-EGLVSF 573

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           +  ++              + V ++T+H  KGLE   V L    + VF            
Sbjct: 574 LEHIQL--DQNMADEGGAADAVHLITIHNTKGLEFRRVILTGLENGVFPRD--------- 622

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                         ++  +E  RL+YV  TRA D L +  
Sbjct: 623 -----------------------------DEADIQEERRLMYVACTRAMDSLYLTA 649


>gi|303233965|ref|ZP_07320614.1| UvrD/REP helicase [Finegoldia magna BVS033A4]
 gi|302494890|gb|EFL54647.1| UvrD/REP helicase [Finegoldia magna BVS033A4]
          Length = 967

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 140/878 (15%), Positives = 283/878 (32%), Gaps = 154/878 (17%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           S L  F    K   +    TQ + +   +L E  K++  E I   ++     +       
Sbjct: 211 SRLYKFLHDDKQNLEIQEFTQFLLESYDNLGESKKENVQEIIDEINKRVDAILSNKEKQY 270

Query: 127 LTLAKYLN-------AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           + L +            Y   K +   LDF D+ +     L+  D    I     Q+  +
Sbjct: 271 VDLYEGFFDILIDINREYSLKKNEKSFLDFNDIEMMCKKALENGD----ILKSCKQKYKY 326

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +IDE QDTS +Q ++   L  D             LF VGD KQ+IYSF GA  K   +
Sbjct: 327 FMIDEYQDTSNLQRDIFYMLCSDNETLD-----RNNLFVVGDPKQAIYSFRGANIKVFEK 381

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +   +K           I    + R+  +I+  ++ ++S     +  S           
Sbjct: 382 TREDIKK------SGGKDITFHENHRTHPNIMEPINYIYSNKMKDRYDS----------- 424

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                         +          + E   +  D+  ++ S  +L   I          
Sbjct: 425 -------------LIAVNELGDVIGRDEFKLNNKDAKTKDDSTDVLVSYI---------- 461

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                         KD  +L R + D            N+  I     D+  L +   I 
Sbjct: 462 ---------NKDNFKDTAILARTKNDFSEYEKSL----NNRNIPYYIFDKQGLEECREIL 508

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           +L+   ++     D++S V +L S +++   ++I              E  Q        
Sbjct: 509 NLIQFIKYAR-YSDEISKVGIL-SNVYDVDYNEILNQT----------ENYQSTMKKIDE 556

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
           + +   + + +        + +D  +  +      + F      +    + +FL    + 
Sbjct: 557 EVEDFTENLTKY-------TLYDSISNYIEKIDYLRIF---DDLQAKANVIKFLEIAKQF 606

Query: 540 EQNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           + N+Y S+++ +   E             + + V++MT+H +KGL    V + +      
Sbjct: 607 DSNNY-SVEDFVEYFENNSNLYQMSYEDEHSDLVKLMTIHKSKGLGFEKVIVDNLSKPSN 665

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
           +      +  + + N      +  P SK R + V  LI+   +    E + + Y   TRA
Sbjct: 666 NKDKF--LLFIDNENIQMQFVLDFPFSKFRMSKVEKLIE---EEEDYEVDNVYYTAFTRA 720

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             +L       +                      + ++ ++   SI   +     +    
Sbjct: 721 KKELSFSNSKKSG---------------HFKQISQYIEDLQQRGSIKFLDMRDIPFVLET 765

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            E      E                  P K +I +   +  ++I    +   E  L    
Sbjct: 766 KEINFKRAE------------------PKKVEIEKFIPVGITSILNFDEEIFEGNLQKTT 807

Query: 779 --TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                 G ++H   ++         K     +   + K      +     +  + +++  
Sbjct: 808 INYILLGNLVHMYAKLSDGNNIPHIKEV--DFLNNDEKKI----FDVATENFNKFIKD-- 859

Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                S             N   ++++ISG +D++      I +++YK      Q  E++
Sbjct: 860 ----FSN-----YKNEMDFNLLYENLMISGFMDRVEFDDSEIKVYDYK---ISSQSQEYL 907

Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
              +  QL  Y  +L   Y NK++  +L+ + +  V  
Sbjct: 908 YEKYHMQLKFYSYVLNKKY-NKNIKMILVNLRKGYVIE 944


>gi|261749558|ref|YP_003257244.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497651|gb|ACX84101.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 707

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 106/598 (17%), Positives = 193/598 (32%), Gaps = 123/598 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K +  +Y +   K+  LDF+D++++TN L         I +K  ++  +ILIDE QDT+ 
Sbjct: 163 KKIYEYYVKRCLKSEALDFDDILLHTNYLFFHFP---KILHKYQEKFQYILIDEYQDTNF 219

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q  +I++L+          S  R +FAVGD+ QSIY+F GA    +L            
Sbjct: 220 SQNTIIKNLS----------SKHRNIFAVGDDAQSIYAFRGANISNILNFHMDY------ 263

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
              +  I  L  ++RST  I+ V +K+ S  +N                          +
Sbjct: 264 --NEAKIFRLEQNYRSTNHIVQVSNKIISFNKNQIFKK---------------------I 300

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W         +                   S    A+ IA +I         +   +   
Sbjct: 301 WTNNEKGEKVKIYGAP--------------SEKEEAQYIASSI---------YFTKRNTQ 337

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            Q KD  +L R    + ++    +  K    I               I D +A  + I +
Sbjct: 338 FQNKDFAILYRTNTQSNILEQALKEKK----IPYKIYGSISFYKRKGILDFLAYLKIITN 393

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY---------IQKFANCGISKF 481
             ++ S + ++K  + N     +  +   + E +T Y             +       K 
Sbjct: 394 PNEEESLLRIIKKKIGNKKAIKLI-LNLSKKEKKTFYNLLKNLINYYPFLRINKKTKEKL 452

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ---FISRFGNEVIDVLDEFLNFTLR 538
           ++ I  I +        + +     I        +   + +     +++ +  +L     
Sbjct: 453 ENFILTIEKFRLELNEKNTYTIAKNIANFFLEEDKKNFYHADDFQYILENISIYLKEQKI 512

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++N   SL   +                  N+V +MT+H +KGLE  VVF+      +F
Sbjct: 513 LKKNGDMSLSGFLRYFSLR---EGIDEENEENQVSLMTIHLSKGLEFSVVFIAGLEENLF 569

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             K   +  +                                        RL YV +TRA
Sbjct: 570 PSKSSLENELKLEEE----------------------------------RRLFYVAITRA 595

Query: 659 SDQLIICKHS----NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
             + I              +    R   ++       +  +      N I+KD +   
Sbjct: 596 QKKAIFTYAKSRFLWGKKIRTVPSRFIQEISEKFIDREHGINNSNKENPISKDLYPDE 653


>gi|93006119|ref|YP_580556.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
 gi|92393797|gb|ABE75072.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
          Length = 1484

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 138/1017 (13%), Positives = 296/1017 (29%), Gaps = 182/1017 (17%)

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             + L       +    KN    +  +     + +        + + D  N + +      
Sbjct: 411  LTSLQDARYPDEDGKIKNFNKNKEKEHQTLFELETISKLMVLLDMLDSLNQHILLVLANL 470

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            +  +   +        ++     F   ++  N  L  R      RY I       LIDE 
Sbjct: 471  NRHIVLAVRDRLPVILEERGETTFSLQMVRLNQALTGRQGDKLARY-IRHHYPVALIDES 529

Query: 186  QDTSLIQWEVIRSLT---------EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            QD +  Q  +I S+          +         +S   L  VGD KQ+IY F G +   
Sbjct: 530  QDINGEQAIMIESIYLPKNKRKQSDSDKQSTTNKTSHEFLLLVGDPKQAIYGFRGGDVAN 589

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTTT 294
                K   +K         S+  L ++ RS A ++  ++  F +P    A        ++
Sbjct: 590  YNYMKAQFEKS--------SLWTLDINRRSNAGVIDALNCWFGMPTETAADNKLAQLGSS 641

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES------WTSYFDSLPQESSASILARR 348
            I ++  +  +      W    +  +S    +  S          +D   +          
Sbjct: 642  IYYQHIKASKPENQLSWFNEPTTQNSALVTEVLSAQPVSLLHLPYDKDKELEYDEF--EI 699

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
             A  I+ ++ ++      K + IQ  DI VL R +KD   +      L     +  +   
Sbjct: 700  TARHIATLLSSNQTL---KGKPIQPSDIGVLARTKKDLKRVEDELVKL----NVPTLTTS 752

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ET 465
               + + +  +D+ AL   +L          +L S L+  S  ++  + T         +
Sbjct: 753  DVSIFETIMAEDVAALLSAMLYPYRHDMINRVLTSHLYGLSIKEVKAMMTDHESGVTEGS 812

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA-----KKGRQQFISR 520
                    A      +Q  I Y+ +     Q          +L       +   Q   + 
Sbjct: 813  YLSSASTKAVNNKKSYQDFITYLKQAAQNWQHFGVLSALHYLLDKNPVQPQGVWQALATH 872

Query: 521  -FGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIM 575
              G+  I  L   ++   +       +  L      ++  P +           + V++M
Sbjct: 873  PEGDRHIMDLRHMMDVLAQYGIGMGEHELLAWFRQNIDAAPSSDWAKQYPLPTESGVQLM 932

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD- 634
            T+H +KGLE P+V+++  G       + +K  +           +    ++S++      
Sbjct: 933  TIHKSKGLEFPIVYVLGMGDASRKAGNNEKFGLYLYNAQQAPSILMQQSAESQSTGNQRR 992

Query: 635  -------------LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                           +   K   +E  RL YV  TRAS+QL +      +      +  +
Sbjct: 993  FSPVRGSATTEDCYTEIETKEGFDELRRLGYVAFTRASEQLYVVLRDPNNKTGFELKPAF 1052

Query: 682  YDM-------------------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            Y +                   +     N+         N++          +    E  
Sbjct: 1053 YWLESPEAKFDLPDRLKGIVGMLRGHNVNEFYNNDSNGANALGLAGNATLATAKSITETI 1112

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINE---------------------PYILNPST 761
                   + +        K  F+ +   ++E                       +++ S 
Sbjct: 1113 EYAPFAEVMKTNYFYGWAKTSFTALARQLDESTQALAVVDERMDDAIDIDMTESVVSSSN 1172

Query: 762  IDTKGKTNLESLLSDNQ-------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYC----- 809
                   +  SL S++          N G  +H++ + I    + +    I         
Sbjct: 1173 SGFFKPVSELSLKSEDDIRFTFVKGANAGTFLHEIFEKIDFNNKSQWSQVIDRAVSSYQL 1232

Query: 810  -------TKNAKLW----------------PAKEYKNLLLSITRLLENPMMT------TA 840
                    + ++L                  A +++ LL     +L+ P++       + 
Sbjct: 1233 PLVYSSAEQQSRLLQANNRENGRIPDLDSMDATKHEALLNWFEEVLKAPLLASNQPLQSI 1292

Query: 841  MSCDSYSEVSVSGK-----------------INCPKKDII-------------ISGRIDQ 870
             +   ++E+  +                   +       +             + G ID 
Sbjct: 1293 NASQRFAELEFNMGLSERFKAQDINSLFQQYLPNEVDKHVNLVPQNKTHLYRYLRGEIDL 1352

Query: 871  ISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPNK 918
            +       ++ +YK++              +       +  Q +IY+  L      +
Sbjct: 1353 VYEHAGKYYVVDYKSNFLGNSLSDYDVSTLKQAMSKAGYWLQAAIYQVALHRFLAMR 1409


>gi|302380542|ref|ZP_07269007.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3]
 gi|302311485|gb|EFK93501.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3]
          Length = 967

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 142/879 (16%), Positives = 281/879 (31%), Gaps = 156/879 (17%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           S L  F    K   +    TQ + +   +L E  K++  E I   ++     +       
Sbjct: 211 SRLYKFLHDDKQNLEIQEFTQFLLESYDNLGESKKENVQEIIDEINKRVDAILSNKEKQY 270

Query: 127 LTLAKYLN-------AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           + L +            Y   K +   LDF D+ I     L+  D    I     Q+  +
Sbjct: 271 VDLYEGFFDILIDINREYSIKKNEKSFLDFNDIEIMCKKALENED----ILKSCKQKYKY 326

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +IDE QDTS +Q ++   L  D             LF VGD KQ+IYSF GA  K   +
Sbjct: 327 FMIDEYQDTSNLQRDIFYMLCSDNEALD-----RNNLFVVGDPKQAIYSFRGANIKVFEK 381

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +   +K           I    + R+  +I+  ++ ++S     +  S           
Sbjct: 382 TREDIKK------SGGKDITFHENHRTHPNIMEPINYIYSNKMKGRYDS----------- 424

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                         +          + E   +  D+  ++ S  +L   I          
Sbjct: 425 -------------LIAVNELGDVIGRDEFKLNNKDAKTKDDSTDVLVSYI---------- 461

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                         KD  +L R + D            N+  I     D+  L +   I 
Sbjct: 462 ---------NKDNFKDTAILARTKNDFSEYEKSL----NNRNIPYYIFDKQGLEECREIL 508

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           +L+   ++     D++S V +L S +++   ++I              E  Q        
Sbjct: 509 NLIQFIKYAR-YGDEISKVGIL-SNVYDVDYNEILNQT----------ENYQSTMKKIDE 556

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
           + +   + + +        + +D  +  +      + F      +    + +FL    + 
Sbjct: 557 EVEDFTENLTKY-------TLYDSISNYIERIDYLRIF---DDLQAKANVIKFLEIAKQF 606

Query: 540 EQNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           + N+Y S+++ +   E             + + V++MT+H +KGL    V + +      
Sbjct: 607 DSNNY-SVEDFVEYFENNSNLYQMSYEDEHSDLVKLMTIHKSKGLGFEKVIVDNLSKPSN 665

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
           +      +  + + N      +  P SK R + V  LI+   +    E + + Y   TRA
Sbjct: 666 NKDKF--LLFIDNENIQMQFVLDFPFSKFRMSKVEKLIE---EEEDYEVDNVYYTAFTRA 720

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             +L       +                        ++ ++   SI   +     +    
Sbjct: 721 KKELSFSNSKKSG---------------HFKQISPYIEDLQQRGSIKFLDMRDIPFLLET 765

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            E      E                  P K +I +   +  ++I    +   E  L    
Sbjct: 766 KEINFKRAE------------------PKKIEIEKFIPIGITSILNSDEEIFEGNLKKTT 807

Query: 779 --TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY-KNLLLSITRLLENP 835
                 G ++H          +    N I      +      K+       +  + +++ 
Sbjct: 808 INYILLGNLVH-------MYAKLSDGNNIPHITEVDFLNNDEKKIFDVATENFNKFIKD- 859

Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
                 S             N   ++++ISG +D++      I +++YK      Q  E+
Sbjct: 860 -----FSN-----YKNEMDFNLLYENLMISGFMDRVEFGDSEIKVYDYK---ISSQSQEY 906

Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
           +   +  QL  Y  +L   Y NK++  +L+ + +  V  
Sbjct: 907 LYEKYHMQLKFYSYVLNKKY-NKNIKMILVNLRKGYVIE 944


>gi|15640012|ref|NP_219465.1| DNA helicase II (uvrD) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026251|ref|YP_001934023.1| DNA helicase II [Treponema pallidum subsp. pallidum SS14]
 gi|3323356|gb|AAC65978.1| DNA helicase II (uvrD) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018826|gb|ACD71444.1| DNA helicase II [Treponema pallidum subsp. pallidum SS14]
          Length = 670

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 94/596 (15%), Positives = 171/596 (28%), Gaps = 145/596 (24%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
             F  +  R +        +       +  A Y    ++   +DF DLI+    LL++  
Sbjct: 150 ASFESVHARVSAPACAARAVLGDRQFAHAYACYHRRMREMGTVDFGDLIMLPVQLLREH- 208

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +  ++      +++DE QD+++ Q+  ++ LT           +   L  VGD+ Q
Sbjct: 209 --QDVAEQLHARWQVVMVDEYQDSNVAQFHFLQVLTG----------AHTYLCVVGDDDQ 256

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY F GAE K +L      Q           II L  ++RST  IL V D V    ++ 
Sbjct: 257 SIYRFRGAEVKNILTFPEFFQN--------TQIIRLEYNYRSTDAILRVADSVVKKNQDR 308

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
            G +  +  T           GT      + +Q +                         
Sbjct: 309 LGKALIAQRT----------GGTKPRLFLLNNQDE------------------------- 333

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A    + I             + R I   D  +L R    +              +I  
Sbjct: 334 EAALCVHLIQE----------ARARGIPYADWAILYRVNAQSLSFEQ----CFLRNRIPY 379

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                        +KD++A  + I++  D+L+   +L  P     E     +     +  
Sbjct: 380 RIVGTLKFYSRAEVKDVLAFLQLIVNGSDELALRRVLNKPPRGIGEKTQDALFVCAQQAA 439

Query: 465 ------TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS------------------- 499
                     ++         K    +  +  L                           
Sbjct: 440 ITDFTTLQSTHLTALGTRARQKVSSFLSLLRALRARMPQAPAAGEEARTSAPPEEPVEER 499

Query: 500 ------PHDFFTLILGAKKGRQQFI---SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                    F ++++      + +       G +    + E +N       +    L   
Sbjct: 500 THDAEGLARFVSVVMEHTGLEEWYRQKDEEEGTQCAVNVQELMNAASLYACSH-EGLVSF 558

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           +  ++              + V ++T+H  KGLE   V L    + VF            
Sbjct: 559 LEHIQL--DQNMADEGGAADAVHLITIHNTKGLEFRRVILTGLENGVFPRD--------- 607

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                         ++  +E  RL+YV  TRA D L +  
Sbjct: 608 -----------------------------DEADIQEERRLMYVACTRAMDSLYLTA 634


>gi|308173148|ref|YP_003919853.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7]
 gi|307606012|emb|CBI42383.1| putative ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM
           7]
 gi|328911212|gb|AEB62808.1| putative ATP-dependent DNA helicase [Bacillus amyloliquefaciens
           LL3]
          Length = 761

 Score =  220 bits (560), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 89/614 (14%), Positives = 181/614 (29%), Gaps = 115/614 (18%)

Query: 81  QKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           ++  + + + +++ D KE  + ++       ++ +  ++              L  HYE 
Sbjct: 248 REQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYRLYEHYER 307

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K++    DF+D+     +L +       I  +     +HILIDE QD + +Q+++++ +
Sbjct: 308 QKREKRQFDFDDMAQGCYELFQS---RPDILAQYQNRFSHILIDEFQDINPVQYKIMQLI 364

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                      S    L  VGD+ QSIY+F G+ P  +L  ++               I 
Sbjct: 365 A----------SPENNLCGVGDDDQSIYAFRGSSPSFILDFQKDYPA--------AKTIY 406

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS   I++    V    +     +  +     H                      
Sbjct: 407 LTANYRSPHPIVSSAHAVVKKNKKRYEKTLSAVKDGVHAP-------------------- 446

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                        +D   +       A  I   +   I                 D  VL
Sbjct: 447 --------VMFFPYDEEEE-------ATMIVSDMKEKIQNG----------ASPDDFAVL 481

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFV 438
            R       I        +   I    +           ++ ++A      +++D  +  
Sbjct: 482 YRTNSAGRAIYERL----HQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDTDAVK 537

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
            +L  P     +  +  +       +                    IK I       +  
Sbjct: 538 DLL--PALFLKQSALQTLKALSITEDCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTM 595

Query: 499 SPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
            P +  T         +    R        +  D L +      +       ++ + ++ 
Sbjct: 596 KPVEAITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKF-----KTIPDFLAH 650

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           ++            N N V ++T+H +KGLE   V+++        H             
Sbjct: 651 VDHMRAAEN--LKTNENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFAL--------- 699

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                               +  +    +  EE  RLLYV MTRA   L +   +N   +
Sbjct: 700 --------------------ETARQGDPAPLEEERRLLYVAMTRAMQHLYVSCPANRRGK 739

Query: 674 KKSNQRTWYDMVYD 687
              + R    ++  
Sbjct: 740 TARSSRFLEPLLRM 753


>gi|229132128|ref|ZP_04260987.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST196]
 gi|228651348|gb|EEL07324.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST196]
          Length = 688

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 103/658 (15%), Positives = 206/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   +         +++ N  K  K+        K +   +EE K+++  +
Sbjct: 165 ILKELRLKDDYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRHNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++    +L+     A +  ++ +  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLEMYYMLENN---APLLTQLQERFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVRNDGIQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  I+ ++   R +L      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIRPVLDHLRLVLEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFINEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|300867523|ref|ZP_07112174.1| hypothetical protein OSCI_3400047 [Oscillatoria sp. PCC 6506]
 gi|300334517|emb|CBN57344.1| hypothetical protein OSCI_3400047 [Oscillatoria sp. PCC 6506]
          Length = 983

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 133/848 (15%), Positives = 257/848 (30%), Gaps = 140/848 (16%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN--CVLDFEDLIINTNDL 159
            + D F    +  +  ++    L +  L+  +   Y++  ++   C  DF  +I      
Sbjct: 150 DALDWFTTTLNVIHLKRIDPENLQTEHLSGAV-QRYKQLAQERPNCFFDFNTIIGELLSR 208

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L +      +  ++  +  ++++DE QD    Q E+IR L++          +  ++  V
Sbjct: 209 LSEP----ALLEQVRSKFRYLIVDEYQDVDPRQEELIRILSDG--------GTRMSVCVV 256

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ Q+IY + G + K +L  ++             + IEL  +FRST  I+ + +K   
Sbjct: 257 GDDDQAIYGWRGTDIKNILTFEQRYPN--------VTRIELINNFRSTHAIVEIANKAVR 308

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                  L++              +   V L E++    D +                  
Sbjct: 309 QLPVNCRLNKAMVAR-----YWQSEQDVVVLRERMAELGDIRRQEFPSD----------- 352

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK-RKDTPLITFLTRFLKN 398
                 A  +A  I  + GT     +G +R I   D+ +L+R  R    +     R    
Sbjct: 353 ---EAEAAWVAERIKYLRGTVIEEKDGTERAIDYADMAILLRSVRSSGQVFVDALRE--- 406

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQ-----EDDLSFVCMLKSPLFNFSEDDI 453
              I  V      L  H  +  + A    +  +     +    F     +    F  D +
Sbjct: 407 -QGIPFVVKGTRGLFSHDEVLLVQAAFCQLAQREFSYTDMTGKFHSFTVNKTREFVRDTV 465

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
            ++  ++  ++       ++      K         E   I++   P D F  +L     
Sbjct: 466 RRLRDRQQMSQADATSFLEWIAKQREKLNRQSLPKEERDGISRRIYPQDIFQEMLEELGA 525

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQN----SYSSLQELISEL----EQYPPTIKRAH 565
             +    + ++++  L  F +   + E          L  L   L               
Sbjct: 526 SAE-TQPWSDDILYNLGRFSHLLTQFESVKQWIEPRDLTPLCLFLGGWAAGKTDDGGVDE 584

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               N V+IMT+H AKGLE PVVF+    S  F              N  P   +     
Sbjct: 585 ITTPNAVQIMTIHAAKGLEWPVVFVPRVSSSNFPSSRR---------NQGPETFLTS--- 632

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                   +  +           RL YV +TR    L I         +K     + ++ 
Sbjct: 633 -------QEFDRSEYAGGDAGERRLWYVALTRCRKFLHISS---QDRHRKKPSDFYKEIT 682

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +D    D      +                     + P+    T         +      
Sbjct: 683 HDYVKGDGNDPTFRR-------------------RDIPIAPVNTELLPTTYSDLNYYWKC 723

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHKR 801
           P    +       PS     G                G  +H +L    Q I    E   
Sbjct: 724 PFDYKLRCLMGFGPSVKQDFG---------------YGQQVHNILAEIHQRIAQNSEAHL 768

Query: 802 ---KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG--KIN 856
              ++F+ +   +   L         L ++    +  ++         +E++        
Sbjct: 769 SITEDFLENLVERQFNLRY--TRGKPLEALKNAAKRSIIRYWQFYRDRAELAFEAEKPFE 826

Query: 857 CPKK--DIIISGRIDQI-SISQQN-------IFIFEYKTHH--HVPQEIEHIPYTHIAQL 904
              +    +ISG ID +  +           + + ++K+      PQ           QL
Sbjct: 827 YVDRQSGALISGTIDLLQIVDSGGQQEYPIPVCVVDFKSQKWEKDPQSYRERRNDVTRQL 886

Query: 905 SIYEKILK 912
            +Y   ++
Sbjct: 887 RLYAAAVR 894


>gi|195941303|ref|ZP_03086685.1| DNA helicase (uvrD) [Borrelia burgdorferi 80a]
          Length = 698

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 95/544 (17%), Positives = 172/544 (31%), Gaps = 125/544 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YEE K KN   DF DLII    +L++      ++  I      I +DE QDT+  
Sbjct: 166 EYIKIYEEEKAKNNAFDFSDLIIKPILMLRQS---KSLKESIQSRFKVIFVDEYQDTNYS 222

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  ++ L  D                VGDE QSIYSF GA  + +L  ++         
Sbjct: 223 QFLFLKELYLD----------GMYFMVVGDEDQSIYSFRGARIENILEFEKTFSNVI--- 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++RS  +I+ + ++V S  +N       +              G+ +  
Sbjct: 270 -----KFYLVQNYRSNLNIVGIANEVISKNKNRYEKQITTQN------------GSGKRM 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +V Q  S       +     D                                     
Sbjct: 313 KFLVFQSTSDEAEYFSNLLVSNDIET---------------------------------- 338

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R    +               I           D   IKD++ L R  +++
Sbjct: 339 -----AILYRFNSQSFHFETSF----LKKNIPYKVLGSIKFYDREEIKDIICLLRLFINK 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKF 481
           +D +SF+ M+  P     +  + KI +  ++ +  +                A   +  F
Sbjct: 390 KDKISFLRMINKPSRGIGKTTLDKIISTLNDEDVNFNLFCASKKTLGLLKNRAKESLLLF 449

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +V   + + +    + +   F   ++        +     +E +  +DE +N  +    
Sbjct: 450 LNVYDELGKKLFEDNYINLSTFIEDVVIRFGLLDYYKKFDKDEKLRNIDELINSGIEYSG 509

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               + + L   LE    +   + +   N + + ++H  KGLE   V +      +    
Sbjct: 510 ----TFEGLAIFLENSSLSPLISGNFKSN-ILLSSIHGVKGLEFDRVVISGLEKGLLP-- 562

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+ L +   EE  RL YV +TRA  +
Sbjct: 563 --------------------------------AEIEELTEDRLEEERRLFYVAITRAKSE 590

Query: 662 LIIC 665
           LI+ 
Sbjct: 591 LIVT 594


>gi|34499531|ref|NP_903746.1| exodeoxyribonuclease V subunit beta [Chromobacterium violaceum ATCC
            12472]
 gi|34105381|gb|AAQ61736.1| exodeoxyribonuclease V, beta subunit [Chromobacterium violaceum ATCC
            12472]
          Length = 1196

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 122/977 (12%), Positives = 263/977 (26%), Gaps = 131/977 (13%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGN--------PTILKKAQTLQQASQTQCIEERFS 67
            +  + W L       + + ++L +             T+ + A  L+             
Sbjct: 220  VASERWRLLASAPEQVEEGLALFLAHPGFKANIYRPDTMARAADNLRGWLAQPDALPELD 279

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
              S   L +    +   + + + K        L +  + ++   D +            L
Sbjct: 280  SDSRKLLDK---LRPEALAKGMKKGCDAPAHPLFERMEAWLAAWDVYMDQVANSLAGLKL 336

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             L  + N      +       F+DL+ +    L        +  ++    +  LIDE QD
Sbjct: 337  ELIAWANEELARRRGVERSRSFDDLLTDLGAALDHPATGPLLAAQVADSFSVALIDEFQD 396

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T   Q+ + R    +           R +F VGD KQ+IYSF GA+    L  +   +++
Sbjct: 397  TDPTQYRIFRRCFVE---------EARPVFLVGDPKQAIYSFRGADIFAYLAARHDAERQ 447

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
             T          L  + RS   ++  V+ +F      +          +  ++     G 
Sbjct: 448  YT----------LDTNRRSDEPLVATVNALF----GRELPFLLDGIAYQPVAASPSSGGR 493

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +++ +     +       ++  +     L    + +    R+            I     
Sbjct: 494  LEVDDDRAPFNAQWLPAGEKELSKEAAELAAAEACADEIARLLTLAGE--DRAAIVKGAS 551

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +R +   DI VLV        +    R       ++ V   +  +       +++AL   
Sbjct: 552  RRRLAGGDIAVLVATHSQGDRVRSELRA----RGVASVALTQESVFASREAGEMLALLHA 607

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
                 ++      L + L       I        E ET +E           +++    +
Sbjct: 608  WAEPANEGRLRRALATELAGLDAARI----QAELEDETRWERQLLKNADDHQRWRE-HGF 662

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            +    H        +    +L    G ++  +         L E +       Q     L
Sbjct: 663  MAAWRHYFARERAAE---RLLPLPDGERRLTNLG------HLAELIQQESEGRQGMAPLL 713

Query: 548  QELISELEQ--YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
                + +              ++   V+I+TVHT+KGL+ PVVF     +     +    
Sbjct: 714  AWFAARVADPPRGEDAVLRLESDAALVKIVTVHTSKGLQYPVVFCPFLWNGALERRGAGF 773

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                             P           + +  +     E  RLLYV +TRA  +  I 
Sbjct: 774  WSYHDGDE---------PWLAPEAAADDGIRQAARSEMLAEKLRLLYVALTRAQYRQYIS 824

Query: 666  KHS----------NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
                            +   +      + +           +  L        W+  E  
Sbjct: 825  WGWVRELKTAALSWLLHAPGARDLAALEALELDGGTVAAQLRAFLDQRGGAARWLEAEGR 884

Query: 716  THHP---------ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                            P ER       +               +  +             
Sbjct: 885  QALAGGRDPGRAYAALPFERRLYAPWKIASFTSLTHDAGSHLAEAPDYDRAAAPAPAEPA 944

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
               +    S  +    G+ +H++ + I     E   +  +     ++   +  +      
Sbjct: 945  ADPVRDRFSFPRGAKAGVCLHEIFENIGFGDAEDDIRAAVQRALARHG--FGEEWLDAGC 1002

Query: 826  LSITRLLENP-----MMTTAMSCDSYSEVSVSGK-------------------------- 854
              I   L         +          E+  +                            
Sbjct: 1003 DLILGALNAEIAPGARLRDVADHKRLIELEFTLPVKKLDVAALIAALQKPAHGLAEPFRR 1062

Query: 855  ----INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHI 901
                ++       + G +D +  +   +++ +YK++H      +              + 
Sbjct: 1063 AAAGLDFASVQGFLKGFVDLVCEAGGRVYLIDYKSNHLGDACDDYRDDSLVHAVAREHYY 1122

Query: 902  AQLSIYEKILKDSYPNK 918
             Q  IY   L+  +  +
Sbjct: 1123 LQYLIYLVALRRYFAAR 1139


>gi|302326928|gb|ADL26129.1| helicase, UvrD/REP family [Fibrobacter succinogenes subsp.
            succinogenes S85]
          Length = 1059

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 131/878 (14%), Positives = 274/878 (31%), Gaps = 125/878 (14%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +    + N+  ++ N+    L   +  S       +   +   + K         +    
Sbjct: 256  RDKKLKTNLFKKDGNEA---LFNSVYDSLGRVYSSKKVRDL--VLKYINLIFGYVEKARE 310

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             +++ K+++ ++DF D+     +LL K +V   I         ++ +DE QD+S +Q ++
Sbjct: 311  EFKKFKEEHHLIDFVDMETRFLELLDKDEVQQDI----CNTYKYVFVDEFQDSSPLQVKI 366

Query: 196  IRSL--------TEDFFVGKNTHSSPRTL-----FAVGDEKQSIYSFHGAEPKRVLREKR 242
               L         +DF V   T              VGD KQ+IY F GA+         
Sbjct: 367  FDKLSEIVGRDECDDFVVTIGTGKDTNEFHIHNSIWVGDFKQAIYGFRGADTDLTKAVAD 426

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
            I  ++  +  ++F I  L  SFRS  +I+   +++F        L ++    I HR    
Sbjct: 427  IIAQKQISLPKQFKIHTLKKSFRSLENIVDFTNELFVPAFE-GILKKEEVELIAHRP--- 482

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                                    + W    D   +E     LA +IA  + N       
Sbjct: 483  ----------------QDNAVKSLKCWK--VDGKKEEERLKNLALQIAKRLKN------- 517

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                     +  D  VL R+      ++   + L     + V    R +  D    +D +
Sbjct: 518  -------GEKPSDYAVLARRGAPLNKLSDALKTL----NVPVC---RTLEFDEK--RDEL 561

Query: 423  ALGRFILS--QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-YIQKFANCGIS 479
            AL   +++    D  ++   + + L     D    I  +    ++  +           S
Sbjct: 562  ALISALMNLVTNDFDNYSRAVVAFLTQKGFDAGRIIDAKLEFDKSYQDNKNCPKYLSDNS 621

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
                  +                    +     GR    +   +E        +  +   
Sbjct: 622  ILAKFAERRDFYRMQTIHNLVESLIVDLDLYSVGRGWENAVGTDECFA---ALIEASYDY 678

Query: 540  EQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            E+         ++   +              + + + V + T H +KGLE   V L+D  
Sbjct: 679  EERCSQIGISPTISGYVDY-----CKDNAKSAGSKDGVVLSTFHHSKGLEWKKVILLDLD 733

Query: 595  SQVFSHKHIKKMHIM-----PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ----- 644
              VF      K  ++       +                 N+ +      +   +     
Sbjct: 734  EDVFDENKRIKYGVLGVHNYHDVAPSESNLYPPMIINLMPNLFAGNTNVAEDMAEKIKNS 793

Query: 645  -----------EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                        E  RLLYV +TRA D+LI+        E      +       +  + E
Sbjct: 794  GFFKSTCQSFISETIRLLYVAITRAKDELILT----LDEENPLQVFSCLKCHIQTGADYE 849

Query: 694  RVKKIKLTNSINKDEWIAYEW---STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              K++ L +  N+D     ++   +    E    + E+  K +  + +  +      +  
Sbjct: 850  NGKEVSLFSFNNQDTNERLKFLFENDKLSEGDSYQVEKPEKLVFKKNEKIETANRDQQPS 909

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
              +P     + I     + +++   +      G  IH +  V+   P  +    I     
Sbjct: 910  KVKPSRKVTANIVFDSGSRIKANPDEMD--KFGTCIHNIFCVLEKSPTVEMVEKIIKNHQ 967

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
                L   ++      ++ + L            +Y E+     +       I +G +D 
Sbjct: 968  METALPQPEDVLKAWQNLEKFLTEKYGAKV---ATYHELPFRHML----DGQIFNGEMDL 1020

Query: 871  ISISQQNIFIFEYKT-----HHHVPQEIEHIPYTHIAQ 903
            +  + + + + ++K+     +  V  + +H    +  Q
Sbjct: 1021 VWETDKGVVLVDFKSYPGNNNDVVAVDNDHYAGKYAGQ 1058


>gi|322378358|ref|ZP_08052814.1| DNA helicase II [Helicobacter suis HS1]
 gi|322380928|ref|ZP_08054999.1| DNA helicase II [Helicobacter suis HS5]
 gi|321146651|gb|EFX41480.1| DNA helicase II [Helicobacter suis HS5]
 gi|321149215|gb|EFX43659.1| DNA helicase II [Helicobacter suis HS1]
          Length = 684

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 103/554 (18%), Positives = 181/554 (32%), Gaps = 130/554 (23%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y E  +K   +DF+DLI     +L        +  +I +   +I IDE QDT+ +Q ++I
Sbjct: 174 YTETLEKENWVDFDDLIALPYMILNYD---LELAKRISERYQYISIDEYQDTNPLQLKLI 230

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           ++             +   L AVGD+ QSIY F GA+ + +L       +          
Sbjct: 231 KTFC----------CAHENLCAVGDDDQSIYGFRGADIENILNFPEYFPQ--------TK 272

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           II+L  ++RST +ILT  +++    +     +  S               +VQ  E    
Sbjct: 273 IIKLEQNYRSTKEILTCANELIVHNKKRYQKTLISQK----------DQSSVQKLEAPHF 322

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
            + ++ N                         I   I               R +  +D+
Sbjct: 323 TNTTEEN-----------------------NFITKKILE----------AANRGVVYEDM 349

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R    +  +           KI           +   IKD +A    +++   D  
Sbjct: 350 AILYRFNCLSKEVEKGL----LQAKIPYTIIGDISFYERAIIKDRLAYLHALMNSHADDC 405

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FANCGISKFQHVIKYIH 489
            + +L   L +  +  + KI        +      +        +       Q     + 
Sbjct: 406 ILRLLPK-LKHIGKGSLDKIKNLCARESSSIAKTYQAGLLKPLLSPSSYVSLQDFFTLLF 464

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGR---QQFISRFGNEVIDVLDEFLNFTLRNEQN---- 542
           +L   A+     +    IL     R   ++   +      + + E LN+  R E+     
Sbjct: 465 DLAKDARSIKNTEQ-AHILFTSYFRICKEELEKQELANSDEEVKEELNYLSRLEETFMSC 523

Query: 543 -----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                    +  +   LEQ           +   V+ M+VH AKGLE  VVF++    + 
Sbjct: 524 MEDSLELKGVASIQDFLEQIILET---PIVDSKGVKCMSVHKAKGLEFSVVFVIGFEEEF 580

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F +K+                                         QEE  RL YV +TR
Sbjct: 581 FPYKN--------------------------------------AEDQEEERRLGYVAITR 602

Query: 658 ASDQLIICKHSNTS 671
           A ++L +C     +
Sbjct: 603 AKEELYLCSAQERN 616


>gi|308388971|gb|ADO31291.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
            alpha710]
 gi|325129902|gb|EGC52703.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
            OX99.30304]
 gi|325135992|gb|EGC58602.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M0579]
          Length = 1204

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 137/967 (14%), Positives = 278/967 (28%), Gaps = 174/967 (17%)

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
            +   +R   L+S  L       K        +      +KL     +   + +      +
Sbjct: 293  KDTHDRLLKLASDKLEAALKKGKTPDAAAFAE-----LQKLADFGRDLNALEEAEEATMI 347

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                   L L  YLN    E KK      F+DL+++ +  L     +  +   + +    
Sbjct: 348  RLQ----LDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAENWET 403

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
             LIDE QDT  +Q+E+ + +           +  R LF VGD KQ+IYSF GA+    L+
Sbjct: 404  ALIDEFQDTDPLQYEIFQKIF---------IAQNRPLFLVGDPKQAIYSFRGADIYAYLQ 454

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                       AG       L  ++RS A ++  +  +F + E    L     + +   +
Sbjct: 455  ----------AAGDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEV--GA 502

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL--PQESSASILARRIAYTIS-NM 356
            +R              S+   +    Q  W    D+    ++      A   A  I+  +
Sbjct: 503  ARAE------------SRLSPERPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHAL 550

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                    N K   +Q+ DI VLVR   +  +++   +      ++  V   R  +    
Sbjct: 551  NEAAGGRLNFKGCPLQSGDIAVLVRTHNEAVMVSAALK----KRQVQSVLLSRESVFASP 606

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
                L AL  F L      +   +L S +F +    +        E     E        
Sbjct: 607  EAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDAQQLHDFNQNESEILHWAESA------ 660

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN-- 534
                           +                       + +SR     +    + L   
Sbjct: 661  ------------RTALDNWNQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELL 708

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVF 589
                 +  + ++L + + +                  ++ + V+I+T+H +KGL+ P+V+
Sbjct: 709  AAEDAQNRNPAALHKWLRDQISLAGNNSGDNRAIRLESDEDLVKIVTMHASKGLQYPLVY 768

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                     +     ++    +   +               +  D  K        E  R
Sbjct: 769  CPFAWDAQDTGPSDWQILHQSANRTELLAKAQ---------LSEDEQKQYADEEMAERLR 819

Query: 650  LLYVGMTRASDQLIICKHSNTSN---------EKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            LLYV +TRA +QL I    +T+          E              +   D      + 
Sbjct: 820  LLYVALTRAEEQLNIYAAYSTNTADNPLAYLIEGSPQDSRETVRRAYACEKDGIAMLKRN 879

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP-------------------- 740
               +  +      ++       P        Q  +                         
Sbjct: 880  WRRVADNAPSGTNFAFTENAPPPAAYRSNAGQTAEFAANSIPERGFRFVRHTSFTALSRH 939

Query: 741  -------KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                   ++   P  +         PS  +T   ++  S+    +    GL +H++L+  
Sbjct: 940  TQTPDGGEEDACPSLDAAETSVPAMPS--ETPTASDGISIHDFPKGTQAGLCLHEILEDF 997

Query: 794  FT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP----------------- 835
                    ++  I     K    +       +        + P                 
Sbjct: 998  KFGQAAAGQETLIADKLKKYG--FEEIWLPAVAEMAEACRKTPLTGAYDLSDISPECRCP 1055

Query: 836  --------------MMTTAMSCDS--YSEV--SVSGKINCPKKDIIISGRIDQISISQQN 877
                           +    + D     EV  + +  ++    +  ++G +D +      
Sbjct: 1056 EMGFTLHTEDFSLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFVDMVCQDPDG 1115

Query: 878  -IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPNK-----SLVC 922
             I + +YK++H             +     + +  Q  IY       +  +     ++  
Sbjct: 1116 NICVIDYKSNHLGTDASAYTQQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSV 1175

Query: 923  LLIYVSE 929
              +++  
Sbjct: 1176 RYLFLRG 1182


>gi|320535846|ref|ZP_08035924.1| UvrD/REP helicase [Treponema phagedenis F0421]
 gi|320147309|gb|EFW38847.1| UvrD/REP helicase [Treponema phagedenis F0421]
          Length = 760

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 103/596 (17%), Positives = 162/596 (27%), Gaps = 171/596 (28%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           + A YE+  ++   +DF DLI     LLK+    A ++  +    + I++DE QD+++ Q
Sbjct: 168 IYAAYEKRLRETGNVDFGDLIQLPVKLLKED---ADVQKTLQNRFSVIMVDEYQDSNIAQ 224

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E++++L                L  VGD+ QSIY F GAE + +L      +       
Sbjct: 225 FELLKALKGSATY----------LCVVGDDDQSIYRFRGAEVQNILTFADNFEH------ 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               II L  ++RS A IL   D V        G    +      +              
Sbjct: 269 --TKIIRLERNYRSYASILRTADSVVGKNTGRLGKKLIAVKGEGEKPHLFFLP------- 319

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                       +    A   A  I   +               
Sbjct: 320 ----------------------------NQETEAELCAELIEKNVSEGD----------T 341

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L R    +              KI           D   IKD +A+   I +  
Sbjct: 342 YSDWAILYRTNAQSLGFETAF----LHRKIPYRVIGSLKFYDREEIKDTLAILALIANGR 397

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ--------------------K 472
           D++S   M+  P          K+ T         E                       +
Sbjct: 398 DEVSLRRMINKPPRGIGAVTQEKLITAARTLMFTAEENSFNFETDADFISAIKTLVPKLR 457

Query: 473 FANCGISKFQHVIKYIHELIHI-------------------------------------A 495
                 +     I+ I EL  I                                      
Sbjct: 458 LTKKAKTGVSEFIEIITELRKILEIGEGYFDEKDIQNKKIFTDSDSEENNGVSEITDSAL 517

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
           +      F   ++ A   ++    +    G +    L E  N  +        SLQ LI 
Sbjct: 518 RAEGLAAFIMKLIEASGLQKFHQDQDEIMGTQKAANLQELANNAVLY----PFSLQGLID 573

Query: 553 ELEQYPPTIK-RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            LE               + V ++T+H  KGLE   V +    + +F             
Sbjct: 574 FLEHIELDRSLVNADDAKDSVNLITIHNTKGLEFRRVIITGLENGIFP------------ 621

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                            EE  RL+YV  TRA D L +   
Sbjct: 622 ------------------------RNAEDIFDLEEERRLMYVACTRAMDSLYLTSA 653


>gi|190576450|ref|YP_001974295.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas
            maltophilia K279a]
 gi|190014372|emb|CAQ48020.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas
            maltophilia K279a]
          Length = 1226

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 134/939 (14%), Positives = 260/939 (27%), Gaps = 127/939 (13%)

Query: 47   LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
                + L   ++     E  +      L  +    K    ++   ++P     L+     
Sbjct: 273  HPLGRQLLAWAERADPRELLASDRLPALLPEVLADKT--NKKFPDRTPS--SPLQAPLAR 328

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            ++ +    + +    +     TL        +  K+   V  ++DLI      L+     
Sbjct: 329  YVALLAERDAWLRGTALDFLHTLRAEATQRLQALKRTRRVQTYDDLIDGVALALEGPQRL 388

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              +R ++  +    L+DE QDT   QW +  ++  D    +        LF +GD KQ+I
Sbjct: 389  TLVR-QLRAQYRIALVDEFQDTDDRQWGIFHTVFGDSPEVREL-GLAPALFLIGDPKQAI 446

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F G +    L+ K+                 L  +FRS   +L  +  ++       G
Sbjct: 447  YGFRGGDIHTYLKAKQ----------VAQQAPVLDQNFRSRPSVLRALQALYDN----GG 492

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                    IR    R G V +   + +      +       S      S      A+  A
Sbjct: 493  EDAFLERDIRFERVRPGGVRSDADYLRDGQAAKALTLRVLRSGGDKAMSADASRDAATQA 552

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A     ++      +  + R +Q  DI VLVR  ++  L+      +     I  V 
Sbjct: 553  C-VAAIHQILVDARAGNAVLRGRPVQPGDIAVLVRSHREATLVQRALAAV----GIPAVA 607

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
              +  L      +DL AL   +L   D+      L + L             QR      
Sbjct: 608  AGKQSLFATAEARDLRALLLALLQPADEGRLRAALATVLLG-----------QRASAIAA 656

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--------TLILGAKKGRQQFI 518
             E             +     +       Q   P              +L    G ++  
Sbjct: 657  MEREGDLQ-------RGFQAQLLHWRERWQRGGPFAVIADVCAAQGERLLALIDGERRLT 709

Query: 519  SRFGNEVIDVLDEFLNFTLRNE---QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            +         L E L                LQ  ++  +Q          ++   V+I+
Sbjct: 710  NYLQ------LGELLQEASAQALGMHGLLDWLQGQMASADQDDEQQLLRLESDARRVQII 763

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P+VFL   G    +        +             +     ++      
Sbjct: 764  TLHKSKGLEYPLVFLPFVGIDGGAPNTASHCTVHVGGQR------QLHWKLDKDEAWEAA 817

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                ++  + E  RLLYVG+TRA   L I         +        D+     H D  +
Sbjct: 818  NAQREREQRAEDARLLYVGLTRAEHALWIAVGDLAGLGRTRLAPLLGDLQALRAHADVHI 877

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
               +   ++ +               T     +       +                   
Sbjct: 878  DDSEAPAALPQLAAEVEGDLPAVRALTRRVPHDWWVYSFTQLAHADAGAGSDIEAAATEL 937

Query: 756  ILNPSTIDTKGKTNLESLLSDNQT--------------FNRGLIIHKLLQVIFTL----- 796
                +      +  LE  L +                    G ++H+ ++ +        
Sbjct: 938  PAPAADEPAGPELPLEPALPEPTAVVEDSAPIDPRFMGSRFGNVLHEAMENVDFAAWGDW 997

Query: 797  -----PEHKRKNFITSYC--TKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCD 844
                     + + +         A +        L+  +   L  P+     + +    +
Sbjct: 998  KPGREAPEGQADVLRKALHDEGYADVDLDDGVAVLVPLVGHTLTVPLPEGGALHSLGEGE 1057

Query: 845  SYSEVSVSGKINCPKKDIIIS-------------------------GRIDQISISQQNIF 879
              +E+     I       ++                          G ID   +     +
Sbjct: 1058 RRAEIDFHFAIEPTTVPALLQVLHAHGVSSGRRGFGQRRRLEGLMTGMIDLTYVRDGRWY 1117

Query: 880  IFEYKTHHHVPQEIEHIP-----YTHIAQLSIYEKILKD 913
            + +YK++       + +        +  Q  IY   L  
Sbjct: 1118 VLDYKSNRLPGYSQDLLAIAMRHSEYDLQALIYTVALHR 1156


>gi|113461072|ref|YP_719140.1| DNA helicase/exodeoxyribonuclease V subunit beta [Haemophilus somnus
            129PT]
 gi|112823115|gb|ABI25204.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Haemophilus somnus
            129PT]
          Length = 1216

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 139/968 (14%), Positives = 301/968 (31%), Gaps = 162/968 (16%)

Query: 45   TILKKAQTLQQASQTQCIEERF--------SLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
              L+  + L++    +   + +         + +     Q+    K     E++KK P +
Sbjct: 261  RWLENEKALRELVALKKWRKDWFESRFNKMRVWAENEDIQQPEAAKYFYQLELDKKEPLV 320

Query: 97   KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                     E   +     T      ++        LN    + K  +    F+DL+   
Sbjct: 321  S---HDLFSELENLVTNEVTQISNNFSVLLYHCVHELNRKIMDYKLTHQQKGFDDLLRLV 377

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             + L +      +   I  +    +IDE QDT   Q+++   +         +       
Sbjct: 378  RNALYQPQ-GDKLAQLIRHQYPFAMIDEFQDTDQQQYDIFYQIY------IKSAVKNTGF 430

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
              +GD KQSIY F GA+    L+     Q R +          L  ++RST  ++  ++ 
Sbjct: 431  IMIGDPKQSIYKFRGADIFTYLKATEQAQYRFS----------LGENWRSTQPLIQTINY 480

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
            +F   EN+  L +        +       G   L       +       +   T   D  
Sbjct: 481  LFDFQENSPFLHKKIPFQQVAKGLYYDTQGN--LLPNRFCLNGRIEPALRGYLTDNND-- 536

Query: 337  PQESSASILARRIAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                  + LA   A +I   + +          + ++AK+I VLV           + + 
Sbjct: 537  ------TQLAENCALSIEQWLQSAVQNQAILDNKPLKAKNIAVLVSSFTQA---EKIQKA 587

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            L++    SV  +DR  + D +  K+L+ + R  L+  ++ + +  L + LF  +  +IF+
Sbjct: 588  LRDKGIASVYLSDRSNVFDSITAKELLHILRACLNPLNENNILNALSTALFAKTGAEIFQ 647

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            I     + E ++E   +       ++Q        ++ +       +     L   +  +
Sbjct: 648  I----KQDENLWENCVERFIAYQQQWQR-----QGILPMLHHLFAVEKINENLQMMEQGE 698

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRI 574
            + ++         L E L    R      S ++    +++ +     +    ++   V+I
Sbjct: 699  RKMTDLW-----HLSELLQQATRLNDTESSLVRWFEKQIQGEERLEEQIRLESDRELVKI 753

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            +T+H +KGL   +V++           +    +     +++    +W    +  + I   
Sbjct: 754  VTLHKSKGLAYDLVWIPFICKPSLFRDNAINTYY----DENQEQVLWDMDKQHSDEI--- 806

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQ----------------LIICKHSNTSNEKKSNQ 678
                 +K    E  RLLYV +TRA  Q                L +         K+ + 
Sbjct: 807  -----EKERMAEDIRLLYVALTRAKYQIVINLPRVFEKKWNALLYVLTKGQIGVNKRIDD 861

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                  +      +   + +++     K      E+ T     +P+E EE   ++     
Sbjct: 862  EYDAKKLLSPIIEELGEQCVEIEED-KKLLVRRNEYITVQQALSPVEAEEFHGKIERNWT 920

Query: 739  IPK--KLFSPIKNDINEPYILNPSTIDTKGK----------------------------- 767
            +    ++    + + +         I+  G                              
Sbjct: 921  VTSFTEMTYRHQRNRSLNSRQKAQQIEISGVFDQARDYDVKENGHDMSASFDMKLSADSD 980

Query: 768  -TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                 S        + G   H+  +    + +    + ++  C         +    L  
Sbjct: 981  YPVGFSPFDFPHGVHVGSEFHRYFEKY-NMTQALNDDQLSKLC--QTLQLSDEWQNPLKK 1037

Query: 827  SITRLLENPM--------MTTAMSCDSYSEVSV------------------------SGK 854
             I  +   P+        +    S D   E+                          S  
Sbjct: 1038 WINTIFNTPLKQDIAGFTLGNIKSQDCLKEMQFYLKLNQSFNENVFNRLLSKYHHLPSSP 1097

Query: 855  INCPKKDIIISGRIDQISISQQNIFIFEYKTH-------HHVPQEIEHIP--YTHIAQLS 905
            I   +   ++ G ID +   +   ++ +YK++       H+    +  +     +  Q  
Sbjct: 1098 ILMDRIKGMVRGFIDLVVRFEGKYYLLDYKSNLLGYSSQHYQQDNLIQVMCNNHYDWQYL 1157

Query: 906  IYEKILKD 913
            IY   L  
Sbjct: 1158 IYTIALHR 1165


>gi|253682928|ref|ZP_04863715.1| UvrD/REP helicase [Clostridium phage D-1873]
 gi|253560854|gb|EES90316.1| UvrD/REP helicase [Clostridium phage D-1873]
          Length = 597

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/559 (17%), Positives = 181/559 (32%), Gaps = 130/559 (23%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
           YK  +   + L +       YE  K+K   +DF+DL++    +L +         K    
Sbjct: 145 YKESEYLESDLRI---FYKEYEIYKQKKNWVDFDDLLLICLKVLNQN--------KNKYN 193

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            ++IL+DE QD++LIQ E+I+ L              + +F V D +Q+IY+F G  P+ 
Sbjct: 194 FDYILVDEHQDSNLIQNELIKLLC-----------PSKNIFCVFDYRQAIYTFRGGNPEY 242

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +  K               II L  ++RS A+I+   +K             DS  ++ 
Sbjct: 243 CMNFKHEYPN--------AQIINLDTNYRSCANIVNNANKFIKRYYGDYEYYSDSNASLL 294

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                    G +Q++                                  A +I   I   
Sbjct: 295 QN-------GNIQIY--------------------------NNEKQEDEAVKIVNEIEKK 321

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           I                 DI +L R    +  I    +       I    ++        
Sbjct: 322 IKEGENLE----------DIAILYRLNSYSIHIENELK----RRDIPYYIDNNGSFFKRK 367

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLK---SPLFNFSEDDIFKICT-QRHETETVYEYIQK 472
            I+ +++  R + +  DD +   +L+    P           I         ++++    
Sbjct: 368 EIECILSCLRLVENPHDDGAVDMLLRYRPYPFTYIRNSTKENIRKLSAMNGLSLFQSFTL 427

Query: 473 FANCGISK---FQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
             +    +    +     I+ L +   +  +       I+   K      + + N+  ++
Sbjct: 428 VNSSKKWELNNLKEFENIINRLNLQYKKEQNLKMLVDNIIKLLKLEDYIKNNYTNQ-EEI 486

Query: 529 LDEF--LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +D    LN      +    +L   I+ +        +      ++V++M++H +KGLE  
Sbjct: 487 IDRLNSLNSFKSFIKGD--NLSNFITYIYS-DEDNNKKAKQKEDKVQMMSIHKSKGLEFK 543

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V      F +                                       KK+   E
Sbjct: 544 NVFIVGIEDGKFPN---------------------------------------KKTNLIE 564

Query: 647 YNRLLYVGMTRASDQLIIC 665
             RL YVG+TR  + L + 
Sbjct: 565 EARLFYVGVTRPKENLYLS 583


>gi|242808279|ref|XP_002485129.1| ATP-depentend DNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218715754|gb|EED15176.1| ATP-depentend DNA helicase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1033

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 95/591 (16%), Positives = 174/591 (29%), Gaps = 149/591 (25%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE A   + +LD++DL++   DLL+K         +    +  +L+DE QDT+ I
Sbjct: 175 QVYREYEAALASSNLLDYDDLLLRCVDLLRKHP-------QCVSNVQAVLVDEFQDTNAI 227

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E++                 R +  VGD  QSIY F  AE K + R +R         
Sbjct: 228 QYELMNLFAAQ----------NRRITIVGDPDQSIYGFRSAETKNLERMQRRYPN----- 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               S++ L  ++RS+  IL    +V              T  I                
Sbjct: 273 ---TSVVLLENNYRSSGSILRSAQQVIEQDAARPVKKLHPTHGIGTMPVLRKLP------ 323

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                        +A+  A+ +   I   I           +++
Sbjct: 324 -----------------------------TAAAEAQWMVAEIRRCI-------TLTGQLL 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D  +L+R    +  I            +           D + I+ L+   R I   
Sbjct: 348 KPSDFAILLRSAALSRQIESEL----GKQGVPYRMVGGSRFFDRVEIRLLLDYLRVISHP 403

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGIS----------- 479
           E++ +   ++  P     ++ +  +         +++ +I+       S           
Sbjct: 404 ENNDALARIINVPTRKIGDETLKNLTVGAESAKLSLWSFIKDVVQGRRSCQKSLSRPANI 463

Query: 480 KFQHVIKYIHELIHIAQ----FCSPHDFFTLILGAKKGRQQFIS--RFGNE-VIDVLDEF 532
               ++  I              SP      ++     R+   +      E     ++EF
Sbjct: 464 GLSTLVGLIEAARQKLHDCVDESSPRTLLEFVISKLGFREYLTATYPLDEENRWANVEEF 523

Query: 533 LNFTLRNEQN---------------------SYSSLQELISELEQYPPTIKRAHSANHNE 571
           L     +  +                        +L   ++ +                +
Sbjct: 524 LAQAGDSSASYSQQDDVLPEIEGLEQHQGHIGEEALSRFLANVALSTEVTTEQGDQPQEK 583

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V I T+H AKGLE PVVF+      +  H                               
Sbjct: 584 VTISTIHAAKGLEWPVVFVAAVYEGIIPHS------------------------------ 613

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                   +    +E  RLLYV MTRA   L +      S   +  + + +
Sbjct: 614 --------RAEDSDEERRLLYVAMTRAQALLYLSLPRRDSKNGEETRPSSF 656


>gi|253698974|ref|YP_003020163.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M21]
 gi|251773824|gb|ACT16405.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M21]
          Length = 1129

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 120/931 (12%), Positives = 270/931 (29%), Gaps = 158/931 (16%)

Query: 78   FTPQKNIITQEINKKSPD-LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN-- 134
              P+  I      K SP+ L +  ++   +              +       L +     
Sbjct: 162  GQPEDRIAAAGAAKVSPESLLKLAQRVCGDPNAAVIPDPPDDATELDDWLQGLKRGFFDY 221

Query: 135  --AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              A   + K+   +  F+DL+++ +  L +          I +     LIDE QDT  +Q
Sbjct: 222  LRAELPKRKRLKNLRSFDDLLLDLHAALLRPASPLPRL--IRERYQAALIDEFQDTDPLQ 279

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + +  ++                 F +GD KQ+IYSF GA+    +   +  ++R T   
Sbjct: 280  FAIFDAIY--------PVGHEAPFFLIGDPKQAIYSFRGADIFAYMGAAQATKERHT--- 328

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                   L  +FRS A ++  V+ +F+  E      +     +        +        
Sbjct: 329  -------LLQNFRSEAGLIDAVNTLFASRELPFLYPQIGFNRVEAAPKEKSR-------L 374

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--------- 363
                Q  +               + +  +   L   +A  IS ++               
Sbjct: 375  VEAGQRKAPLKLWLAPRKDAGKPINKGDAWEQLPETVAAEISRLLRDGAAGKLTVEELQK 434

Query: 364  -----SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                     +R ++ KDI VLVR  +   L+            I  V      L +    
Sbjct: 435  DAEESEKWVRRAVEPKDIAVLVRANRQAKLMQRAL----TRRGIPSVLCSAGNLFESDEA 490

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             +L+ L   +     +      L + L   S  ++ ++                      
Sbjct: 491  AELLRLLSAVAQPGHESLLRGALATELVGVSGTELARLMNDEK----------------- 533

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTL 537
              ++ +++            S        +  ++ R++ ++   G   +  L   +    
Sbjct: 534  -GWEEILEEFRGYHDTWNSGSCMSMALQFMEKREVRKRLLAEPMGERRLTNLLHAIETMH 592

Query: 538  RNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            + + N    ++ +I+ L      E      +     +   V+++T+H +KGLE P+VFL 
Sbjct: 593  QAQVNERLGMEAVIAWLACRITEEPKKEEYEIRLETDEAAVQLVTIHKSKGLEYPIVFLP 652

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                  ++    K    +    +   +     +         +      +    E  RLL
Sbjct: 653  FC----WAEYAGKDEGALFHDEEGRVVLDIGSEQMV------EHKAQAAREALAESLRLL 702

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYD-------MVYDSFHNDERVKKIKLTNSI 704
            YV +TR   +  +   +       +     +         V  S  +          +S 
Sbjct: 703  YVALTRGKHRTYLTWGAFKDAGDSALHYLLHPGQTPVKGQVTLSDADIRERLDTLAASSA 762

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
             K E +    +   P     E+   +  L    ++ +         ++          D 
Sbjct: 763  GKIEVLDLPAADLAPYRPNDEKAPDLAPLPFTGEVSRDWRVASFTSLSSHKHHTAELPDR 822

Query: 765  KGKTNLESL----------LSDNQTFNRGLIIHKLLQVIFTLPE-HKRKNFITSYCTKNA 813
              ++ +E             +  +    G+ +HK+ + +       +    +     K+ 
Sbjct: 823  DEESPIEERPGRDIEPTGIFAFPKGAKAGIFLHKIFEDLDFTRVGEQLSPLVEEQLDKHG 882

Query: 814  KLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKKDII---- 863
                  +   +   +  +L+ P+      +         +E+     ++    + +    
Sbjct: 883  FAPDWSQ--AVRDMVQNVLQAPLGDGGIALAQVGLERRLTEMEFFFPLSHVTSERLREAA 940

Query: 864  ----------------------------------ISGRIDQISISQQNIFIFEYKTHHH- 888
                                              + G ID +       +I ++K++H  
Sbjct: 941  ARFTAGHGAAGVPGFPVDLADLFSRLSFAPVQGMLLGFIDLVFEHGGRYYIVDWKSNHLG 1000

Query: 889  -VPQEIEHIPYT-------HIAQLSIYEKIL 911
              P +              +  Q  +Y   L
Sbjct: 1001 NAPGDYGQAALKKEMEENFYPLQYLLYTVAL 1031


>gi|325206373|gb|ADZ01826.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
            M04-240196]
          Length = 1204

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 137/967 (14%), Positives = 278/967 (28%), Gaps = 174/967 (17%)

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
            +   +R   L+S  L       K        +      +KL     +   + +      +
Sbjct: 293  KDTHDRLLKLASDKLEAALKKGKTPDAAAFAE-----LQKLADFGRDLNALEEAEEATMI 347

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                   L L  YLN    E KK      F+DL+++ +  L     +  +   + +    
Sbjct: 348  RLQ----LDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAENWET 403

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
             LIDE QDT  +Q+E+ + +           +  R LF VGD KQ+IYSF GA+    L+
Sbjct: 404  ALIDEFQDTDPLQYEIFQKIF---------IAQNRPLFLVGDPKQAIYSFRGADIYAYLQ 454

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                       AG       L  ++RS A ++  +  +F + E    L     + +   +
Sbjct: 455  ----------AAGDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEV--GA 502

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL--PQESSASILARRIAYTIS-NM 356
            +R              S+   +    Q  W    D+    ++      A   A  I+  +
Sbjct: 503  ARAE------------SRLSPERPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHAL 550

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                    N K   +Q+ DI VLVR   +  +++   +      ++  V   R  +    
Sbjct: 551  NEAAGGRLNFKGCPLQSGDIAVLVRTHNEAVMVSAALK----KRQVQSVLLSRESVFASP 606

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
                L AL  F L      +   +L S +F +    +        E     E        
Sbjct: 607  EAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDAQQLHDFNQNESEILHWAE-------- 658

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN-- 534
                       +                           + +SR     +    + L   
Sbjct: 659  ------SARTALDNW----NQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELL 708

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVF 589
                 +  + ++L + + +                  ++ + V+I+T+H +KGL+ P+V+
Sbjct: 709  AAEDAQNRNPAALHKWLRDQISLAGNNSGDNRAIRLESDEDLVKIVTMHASKGLQYPLVY 768

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                     +     ++    +   +               +  D  K        E  R
Sbjct: 769  CPFAWDAQDTGPSDWQILHQSANRTELLAKAQ---------LSEDEQKQYADEEMAERLR 819

Query: 650  LLYVGMTRASDQLIICKHSNTSN---------EKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            LLYV +TRA +QL I    +T+          E              +   D      + 
Sbjct: 820  LLYVALTRAEEQLNIYAAYSTNTADNPLAYLIEGSPQDSRETVRRAYACEKDGIAMLKRN 879

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP-------------------- 740
               +  +      ++       P        Q  +                         
Sbjct: 880  WRRVADNAPSGTNFAFTENAPPPAAYRSNAGQTAEFAANSIPERGFRFVRHTSFTALSRH 939

Query: 741  -------KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                   ++   P  +         PS  +T   ++  S+    +    GL +H++L+  
Sbjct: 940  TQTPDGGEEDACPSLDAAETSVPAMPS--ETPTASDGISIHDFPKGTQAGLCLHEILEDF 997

Query: 794  FT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP----------------- 835
                    ++  I     K    +       +        + P                 
Sbjct: 998  KFGQAAAGQETLIADKLKKYG--FEEIWLPAVAEMAEACRKTPLTGAYDLSDISPECRCP 1055

Query: 836  --------------MMTTAMSCDS--YSEV--SVSGKINCPKKDIIISGRIDQISISQQN 877
                           +    + D     EV  + +  ++    +  ++G +D +      
Sbjct: 1056 EMGFTLHTEDFSLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFVDMVCQDPDG 1115

Query: 878  -IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPNK-----SLVC 922
             I + +YK++H             +     + +  Q  IY       +  +     ++  
Sbjct: 1116 NICVIDYKSNHLGTDASAYTQQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSV 1175

Query: 923  LLIYVSE 929
              +++  
Sbjct: 1176 RYLFLRG 1182


>gi|310640070|ref|YP_003944828.1| ATP-dependent DNA helicase, uvrd/rep family protein [Paenibacillus
           polymyxa SC2]
 gi|309245020|gb|ADO54587.1| ATP-dependent DNA helicase, UvrD/REP family protein [Paenibacillus
           polymyxa SC2]
          Length = 811

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/696 (14%), Positives = 204/696 (29%), Gaps = 99/696 (14%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +         +    +      T+     AK     YE  K++   +DF+D+++  + LL
Sbjct: 182 ESLLSALSAWKAEGRSADELPETIREEADAKRAMLAYEAWKQERSKMDFDDILLRASVLL 241

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  D    +   + +  ++I++DE QDT+ +Q+E+++ L              R L  VG
Sbjct: 242 RDPD----VLQPLQRRFSYIMVDEFQDTNALQYEMVQRLAA----------KHRNLMVVG 287

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ Q+IY+F+GA  + +L   ++         +   +I L +++RS A IL +   + + 
Sbjct: 288 DDDQTIYTFNGARQESILEFDKVY--------KDAKVITLDINYRSDARILGLGSNIVAK 339

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             + +     +              G  +                               
Sbjct: 340 NVHRRSKRLAAAGREGLPPQFATPSGPEE------------------------------- 368

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I   +   +             ++ +DI +L R    +  I      L    
Sbjct: 369 ----EAGHIVTHLLGQVEEGR---------LRYRDIAILHRTASGSRSI---FEQLIMRD 412

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK----SPLFNFSEDDIFKI 456
              +      +  D   I+ LM   R  L+     S    L     S           + 
Sbjct: 413 VPFIQYGAGAVFYDQSLIRPLMDHLRLSLNPRRMESIPSTLGPLYVSREAGMEWIMREEK 472

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK--KGR 514
              +           +  +    + +  I+ I  L  +    +  +   +        G 
Sbjct: 473 QQAKKYPLIHLSRWDRLRDFQREQVKERIRLIRSLTTMKPAYAIQEMRRVFYDKYLESGD 532

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR-AHSANHNEVR 573
               + +   + + L+E      R +            EL +    ++      + + VR
Sbjct: 533 TGAWTHYKETMQESLEELETAAKRFDTVEA--FVNFADELSERHRQMESLRREEDSDAVR 590

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKGLE P V+ +     +  H       +                        +
Sbjct: 591 LMTIHRAKGLEFPCVYWIGASEGILPHSSALHSELPEDRRAG----------------AA 634

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   +  EE  RL YV +TRA + L I   ++   +  +  R   +    +     
Sbjct: 635 PATAVDNDAALEEERRLAYVAVTRAKELLYITSPASNHGKPAAVSRFLLEAYGVTPPETS 694

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
           +    + +    K        +      +      + +          +  S       E
Sbjct: 695 KPDTRRSSFGQPKGTSGYGSRAGGGSPASGTATRVSSRPGSTPAATTARTASATARSQTE 754

Query: 754 PYILNPSTIDTKGKTNLESLLS-----DNQTFNRGL 784
           P +  P    T                     + G 
Sbjct: 755 PRVDVPVWKCTDAACKAWMRRDTVGGRRTTGASAGT 790


>gi|166030959|ref|ZP_02233788.1| hypothetical protein DORFOR_00640 [Dorea formicigenerans ATCC
           27755]
 gi|166029226|gb|EDR47983.1| hypothetical protein DORFOR_00640 [Dorea formicigenerans ATCC
           27755]
          Length = 614

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/622 (16%), Positives = 198/622 (31%), Gaps = 128/622 (20%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-------KMFKSTLASLTLA 130
              +KN + +EI K+    + +  +  D   ++ +            + ++S        
Sbjct: 104 SEEEKNQLLKEILKQMDWEQTEKSQEADFLQELSEEIGNVGNNAVDIEFYESRRFPKDKF 163

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   YE  KKK   LDFED++I    L  +      +  K  ++ +++L+DE QD + 
Sbjct: 164 RELYRIYETEKKKYRKLDFEDMLIWCRKLFLE---RPDLLAKWQEKYHYVLVDEFQDINQ 220

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++VIR L                LF VGD+ QSIY F GA+P  +    +   +    
Sbjct: 221 VQYDVIRMLAA----------PENNLFIVGDDDQSIYGFRGAKPGIMKDFMQDYPE---- 266

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L +++RS A I+    +V    ++            +              
Sbjct: 267 ----AKRILLDINYRSNAHIVKGALRVIGHNKDRYEKKIQPFREAQ-------------- 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                         +        D L +        + I   I   +             
Sbjct: 309 --------------ETVHVQETLDPLDES-------KYILKEIQKYMKKG---------- 337

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFIL 429
           +  K + VL R  +D      +       Y+I     +R   L +H    D+    R  +
Sbjct: 338 VDLKQMAVLYRTGEDAR----VLAETFTQYQIPFSMKERIHHLYEHFVCTDMNCYFRLAV 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              D   F+ +   P    S   + +                +   C     Q  I  + 
Sbjct: 394 GTYDRGDFLEIANRPKRYLSRGCMEETPVTYES--------LRRFYCDKEWMQDRIDQLE 445

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVI-----DVLDEFLNFTLRNEQNS 543
             + + +  +P+     I  +    +       G+++      +++DE    T    Q  
Sbjct: 446 WDMKMIRTKTPYAAIQYIRKSIGYDEFLKEYALGHQMEYSELKEIMDELQERTKEF-QTL 504

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
              L  +           ++  +   + V  +T+H AKGLE  VVF++++   V  +K  
Sbjct: 505 PEWLAHVEEYKHTLQMQRQQRGNGTGDGVTCLTMHGAKGLEYEVVFVIESNEGVTPYKKA 564

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                +                                          YV MTRA  +L 
Sbjct: 565 GTPEELEEERRL-----------------------------------FYVAMTRAKKKLF 589

Query: 664 ICKHSNTSNEKKSNQRTWYDMV 685
           I      + + K+  R   +++
Sbjct: 590 ITYVKEKNGKSKTPSRFIDELL 611


>gi|328554009|gb|AEB24501.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens TA208]
          Length = 761

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/614 (14%), Positives = 181/614 (29%), Gaps = 115/614 (18%)

Query: 81  QKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           ++  + + + +++ D KE  + ++       ++ +  ++              L  HYE 
Sbjct: 248 REQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYRLYEHYER 307

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K++    DF+D+     +L +       I  +     +HILIDE QD + +Q+++++ +
Sbjct: 308 QKREKRQFDFDDMAQGCYELFQS---RPDILAQYQTRFSHILIDEFQDINPVQYKIMQLI 364

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                      S    L  VGD+ QSIY+F G+ P  +L  ++               I 
Sbjct: 365 A----------SPENNLCGVGDDDQSIYAFRGSSPSFILDFQKDYPA--------AKTIY 406

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS   I++    V    +     +  +     H                      
Sbjct: 407 LTANYRSPHPIVSSAHAVVKKNKKRYEKTLSAVKDGVHAP-------------------- 446

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                        +D   +       A  I   +   I                 D  VL
Sbjct: 447 --------VMFFPYDEEEE-------ATMIVSDMKEKIQNG----------ASPDDFAVL 481

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFV 438
            R       I        +   I    +           ++ ++A      +++D  +  
Sbjct: 482 YRTNSAGRAIYERL----HQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDTDAVK 537

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
            +L  P     +  +  +       +                    IK I       +  
Sbjct: 538 DLL--PALFLKQSALQTLKALSITEDCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTM 595

Query: 499 SPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
            P +  T         +    R        +  D L +      +       ++ + ++ 
Sbjct: 596 KPVEAITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKF-----KTIPDFLAH 650

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           ++            N N V ++T+H +KGLE   V+++        H             
Sbjct: 651 VDHMRAAEN--LKTNENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFAL--------- 699

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                               +  +    +  EE  RLLYV MTRA   L +   +N   +
Sbjct: 700 --------------------ETARQGDPAPLEEERRLLYVAMTRAMQHLYVSCPANRRGK 739

Query: 674 KKSNQRTWYDMVYD 687
              + R    ++  
Sbjct: 740 TARSSRFLEPLLRM 753


>gi|304314662|ref|YP_003849809.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588121|gb|ADL58496.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 918

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 132/898 (14%), Positives = 283/898 (31%), Gaps = 181/898 (20%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
            ++   L+    + Q+  I+       ++    +     +A      Y +  ++  VLDF
Sbjct: 134 RERFVKLQAFFSECQENMIEPEALLEYHRSHG-SKRIEIVAAKAYGKYLKLMEEKRVLDF 192

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
             +      LL+  +    +   +      +++DE QDT+ IQ   +  L  D       
Sbjct: 193 SGMQWQVVKLLESDE---RVLEDLRARYRFLMVDEYQDTNPIQERFLELLAGD------- 242

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
               + +FAVGDE QSIY F G+ P+  L  +               ++ L  +FRS   
Sbjct: 243 ---EKNIFAVGDEDQSIYGFRGSTPENFLGFEDKYG---------AEVVMLERNFRSVPS 290

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+ +  +      +              ++ R  +    +++      H  +        
Sbjct: 291 IVDITQRFMEGYRDYP------------KTIRPVRNSKNRVFILDNPTHQDEP------- 331

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                            R I   I  ++  D I   G         + +L R  K   + 
Sbjct: 332 -----------------RNIVSIIRALVDHDVIPHQGY--------VTLLFRSVKHDAV- 365

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG--------RFILSQEDDLSFVCML 441
                       I           D   I  ++ L         R +    ++       
Sbjct: 366 --EIMNELRREDIPFNVYGEGGFFDREEILYIIQLLHHTRSIRRRIVRLSNENTEHFESE 423

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
              L   S + I  +  +   +   +E  ++         + ++  ++ LI         
Sbjct: 424 FMDLTGESIEIIKNMGDEDFRSLRTHEEFREAGFTDHDDIEKLVA-LNRLID--SELGVL 480

Query: 502 DFFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQY 557
           + +  IL   +   + + R  +E  +    L  F +     E+ +S  +++ L+  +   
Sbjct: 481 ERYYEILEISRYPHRLLERGDDESREKLYNLARFSSIIKDYERVSSEPTVEGLMEFVRMA 540

Query: 558 PPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                + +      N   V +MT+H AKGLE PVV +    +     K+           
Sbjct: 541 MNGSVKKYDQILLDNPYSVNVMTMHRAKGLEFPVVIICSVFNGKLPRKNR---------- 590

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                       +   +I  +L K   +    E  RL YVGMTRA D LII    N    
Sbjct: 591 ----------DEQEDLSIPDELRKSTGRGDVLEERRLFYVGMTRAQDMLIISATENHRGR 640

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
              +                      + + ++     + +     PE   +E  +   ++
Sbjct: 641 LGYSP--------------------FIEDLLSASRITSDKLGRIDPEYARIEVIKNTCEV 680

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN--------RGLI 785
            D + +             E + ++ + ++T        ++     F+         G+ 
Sbjct: 681 GDIESM-------------ETFRMSFTELNTYLTCPFRYMMLYEYGFDVPSTMNQIYGMA 727

Query: 786 IHKLLQVIFT---LPEHKRKNFITSYCTKNAKL--WPAKEYKNLLLSITRLLEN--PMMT 838
           +H+ L+ I       E     +I    ++  +      + +      + R +E+      
Sbjct: 728 VHECLRRINRRLMRGEVITDGYIHELASETLRDLNLSREAFDAFKSKLKRYIEDIRSRAA 787

Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYK--THHHVPQEIEH 895
             +S             +  +   +++G+ D I  +    + + ++K  T   +      
Sbjct: 788 RIISA--------EKPFSIMRDGFMLTGQTDLIIENPNGGLELVDFKAMTGEGIEATDIS 839

Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV-SEPKVFII-PQNKLNKAFAEISTKI 951
           +      QL +Y   L++ +        L Y   + +   I P + +     E++ ++
Sbjct: 840 L------QLGLYRHALEEDF-----DGFLAYTFEDSEWHEIEPLDDVEAVLIEVAGRV 886


>gi|325202419|gb|ADY97873.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
            M01-240149]
 gi|325207829|gb|ADZ03281.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
            NZ-05/33]
          Length = 1204

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 137/967 (14%), Positives = 278/967 (28%), Gaps = 174/967 (17%)

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
            +   +R   L+S  L       K        +      +KL     +   + +      +
Sbjct: 293  KDTHDRLLKLASDKLEAALKKGKTPDAAAFAE-----LQKLADFGRDLNALEEAEEATMI 347

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                   L L  YLN    E KK      F+DL+++ +  L     +  +   + +    
Sbjct: 348  RLQ----LDLIGYLNRSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAENWET 403

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
             LIDE QDT  +Q+E+ + +           +  R LF VGD KQ+IYSF GA+    L+
Sbjct: 404  ALIDEFQDTDPLQYEIFQKIF---------IAQNRPLFLVGDPKQAIYSFRGADIYAYLQ 454

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                       AG       L  ++RS A ++  +  +F + E    L     + +   +
Sbjct: 455  ----------AAGDARHRYTLATNYRSHAALIGSIGALFRLKERPFVLENIGYSEV--GA 502

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL--PQESSASILARRIAYTIS-NM 356
            +R              S+   +    Q  W    D+    ++      A   A  I+  +
Sbjct: 503  ARAE------------SRLSPERPAVQVRWLHENDNEKANKDVLRRRAADYCADEIAHAL 550

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                    N K   +Q+ DI VLVR   +  +++   +      ++  V   R  +    
Sbjct: 551  NEAAGGRLNFKGCPLQSGDIAVLVRTHNEAVMVSAALK----KRQVQSVLLSRESVFASP 606

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
                L AL  F L      +   +L S +F +    +        E     E        
Sbjct: 607  EAAALSALIGFWLEPRRAGTLRFVLTSGIFGYDAQQLHDFNQNESEILHWAE-------- 658

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN-- 534
                       +                           + +SR     +    + L   
Sbjct: 659  ------SARTALDNW----NQYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELL 708

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVF 589
                 +  + ++L + + +                  ++ + V+I+T+H +KGL+ P+V+
Sbjct: 709  AAEDAQNRNPAALHKWLRDQISLAGNNSGDNRAIRLESDEDLVKIVTMHASKGLQYPLVY 768

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                     +     ++    +   +               +  D  K        E  R
Sbjct: 769  CPFAWDAQDTGPSDWQILHQSANRTELLAKAQ---------LSEDEQKQYADEEMAERLR 819

Query: 650  LLYVGMTRASDQLIICKHSNTSN---------EKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            LLYV +TRA +QL I    +T+          E              +   D      + 
Sbjct: 820  LLYVALTRAEEQLNIYAAYSTNTADNPLAYLIEGSPQDSRETVRRAYACEKDGIAMLKRN 879

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP-------------------- 740
               +  +      ++       P        Q  +                         
Sbjct: 880  WRRVADNAPSGTNFAFTENAPPPAAYRSNAGQTAEFAANSIPERGFRFVRHTSFTALSRH 939

Query: 741  -------KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                   ++   P  +         PS  +T   ++  S+    +    GL +H++L+  
Sbjct: 940  TQTPDGGEEDACPSLDAAETSVPAMPS--ETPTASDGISIHDFPKGTQAGLCLHEILEDF 997

Query: 794  FT-LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP----------------- 835
                    ++  I     K    +       +        + P                 
Sbjct: 998  KFGQAAAGQETLIADKLKKYG--FEEIWLPAVAEMAEACRKTPLTGAYDLSDISPECRCP 1055

Query: 836  --------------MMTTAMSCDS--YSEV--SVSGKINCPKKDIIISGRIDQISISQQN 877
                           +    + D     EV  + +  ++    +  ++G +D +      
Sbjct: 1056 EMGFTLHTEDFSLKRLRDWFARDDIRLPEVCRAAAETLDFHTVNGFLNGFVDMVCQDPDG 1115

Query: 878  -IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPNK-----SLVC 922
             I + +YK++H             +     + +  Q  IY       +  +     ++  
Sbjct: 1116 NICVIDYKSNHLGTDASAYTQQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSV 1175

Query: 923  LLIYVSE 929
              +++  
Sbjct: 1176 RYLFLRG 1182


>gi|291523576|emb|CBK81869.1| Superfamily I DNA and RNA helicases [Coprococcus catus GD/7]
          Length = 666

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/597 (16%), Positives = 185/597 (30%), Gaps = 121/597 (20%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           + E +     E   ++      + + +T  + ++ + +   Y +  + + ++DFED+++ 
Sbjct: 126 VSEFVNDVLSEIGLVKGSMMDIEHYYATSCATSVFRDIYKQYVQRMENSRLIDFEDMLVY 185

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
           T +L  +      I      +  +ILIDE QD +L+Q+++IR L                
Sbjct: 186 TWELFTQ---RKDILAAWQHKFQYILIDEFQDINLLQYKLIRMLAL----------PQNN 232

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +F VGD+ QSIY F GA P+ +L  ++               + L +++RS A I+    
Sbjct: 233 IFIVGDDDQSIYGFRGARPEIMLNFEKDF--------SDVKKVFLSVNYRSQAAIVRGAG 284

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            V    +        +    +           V +        ++               
Sbjct: 285 CVIKNNKQRFDKQIRAVRPEK---------EPVDIRVFQGPADENAA------------- 322

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                        +   I +               I   ++ VL R          +   
Sbjct: 323 -------------VIREIRDYHDQG----------ILYHEMAVLFRTNTQAR----MLLE 355

Query: 396 LKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
              +Y I     D    +  H   +D+MA  +  L       ++ ++  P    S   + 
Sbjct: 356 KMMEYNIPFKMQDAMPNIYQHWVTQDIMAYIQIALGSTARSHYLRIINRPNRYVSRQMLS 415

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
           +          + E  +          Q  +      +H+     P      I       
Sbjct: 416 ERQVAFD---VLMEQYKDKPWM-----QERLSKFAYDVHMLTQMQPFAAINYIRHGIGYD 467

Query: 515 QQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
           +            G ++I++LDE  +               +    EQ     ++     
Sbjct: 468 EFLEKYAEERKMDGQDLIELLDELQDSARNY-ATYEEWFGHIEEYTEQLRKQTRKQRDEK 526

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V + T+H +KGLE  +VF+VD    V  H                            
Sbjct: 527 ADGVALATMHHSKGLEYQIVFIVDANETVTPHH--------------------------- 559

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                   K L  +  EE  R+ YV MTRA  +L I              R   +++
Sbjct: 560 --------KALLDADIEEERRMFYVAMTRAKSRLHIFFLKERYGRPMVMSRFVGEIL 608


>gi|288942789|ref|YP_003445029.1| exodeoxyribonuclease V subunit beta [Allochromatium vinosum DSM 180]
 gi|288898161|gb|ADC63997.1| exodeoxyribonuclease V, beta subunit [Allochromatium vinosum DSM 180]
          Length = 1284

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 145/1105 (13%), Positives = 296/1105 (26%), Gaps = 207/1105 (18%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDIN-KYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
              +E      +          +D   +    ++E      +K     Q +       +  
Sbjct: 218  PPDEIVGRCLETRRHTIATLKTDWRTQDHIAALERLFEQAVKNKAFKQPSLNKTHRAKVL 277

Query: 67   SLLSSFFLTQK--------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTY 117
              L  +  T              + + +  I +   D  +  +       +       T 
Sbjct: 278  DGLRVWLETPDQTEPDIFGGQSWQRMSSLAIAEIWNDPAKAPVDDPACRALADLHETLTT 337

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                +         +L +H E  K+++ +L   DL+I  +  L+  +V   +   I ++ 
Sbjct: 338  LPDPTEDLLTHAVHWLKSHVEREKRQSAILTQNDLLIRLDQALQG-EVRERLAAAIRRQF 396

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
               L+DE QDT  +Q+ +  S+ E        + +    F +GD KQ+IY+F GA+    
Sbjct: 397  PVALVDEFQDTDPLQYRIFSSIYE-----IQANHAATGFFMIGDPKQAIYAFRGADIHTY 451

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA-------QGLSED 290
            L  +   Q              L +++RS+  ++T V+ +F   E             + 
Sbjct: 452  LIARAATQ---------GRHYTLDVNYRSSTGLITAVNALFEHGERTATHGAFLFREPDG 502

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                +    +R        L          Q        +   +     +  +  A R  
Sbjct: 503  QGNPVPFHPARPRDQAERTLTIDGRPCPPLQGWVIPPGPSGKLNKDAYRARTAEAAARAI 562

Query: 351  YTISNMIGTDT---IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
              +  +              +R ++  D+ VLV  R +   I    R L      SV  +
Sbjct: 563  AELLRLGQAGRALLPVGQDGERPLEPSDLAVLVNNRNEADAIRTELRRLDVA---SVYLS 619

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            +R  + D    +DL  L R I    DD      L + L      D+ ++       ET  
Sbjct: 620  ERGNVFDTQIARDLAVLLRAIADPFDDRLMRQALATRLLGQGLTDLDRLNRDELHWETQG 679

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
            E ++          Q  +  ++ LI              +LG   G +            
Sbjct: 680  ERLRDLNGRWRR--QGFLPMLYRLIGE------FRIAARLLGTTDGERAMTDLL------ 725

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYP-------PTIKRAHSANHNEVRIMTVHTA 580
             L E L           + ++ L   +              +    ++   VR++T+H +
Sbjct: 726  HLGELLQRASEELDGEQALVRFLEEAIADSDAATGETAEARQLRLESDARLVRVVTIHKS 785

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE P+VFL        +    + +    + +          + +        L+    
Sbjct: 786  KGLEYPLVFLPFIADCRRTQSKDRPLKTHDAAH----------RLQVHLGGDDALVAQAD 835

Query: 641  KSTQEEYNRLLYVGMTRASDQLIIC---------------------KHSNTSNEKKSNQR 679
            +    E  R LYVG+TRA     +                          + +++   + 
Sbjct: 836  RERLGEDLRKLYVGLTRARHANWLGLGAISDLEHSALGYLLGLDGQTVEWSGDDQPETEG 895

Query: 680  TWYD-----------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----- 723
            +  +            +                     +  +  E +   P+  P     
Sbjct: 896  SGSEAQGTSNGDLSARLRRLSCVTLIDPPAADPAPYQAEAEVELEGARPAPDWRPRAWWI 955

Query: 724  -----------LEREETIKQLMDEQKIPKKLFSPIKN---------DINEPYILNPSTID 763
                       L   E +   +       +  SP                     P T  
Sbjct: 956  SSYSALSRGAHLADSEDLAAGVWAASETSRPVSPADAVETADDETVREELAETRTPETEM 1015

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN-------------------- 803
                     L    +    G  +H LL+    L    R                      
Sbjct: 1016 QTRSLGTGRLHDFPRGGRYGTFLHGLLEWAANLRAPTRPTGPARPGFAAALEAAQARRRM 1075

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENP------------MMTTAMSCDSYSEVSV 851
                  ++    W       L+  + R                  +          E+  
Sbjct: 1076 LTQRCASRRLSDWVEPLDAWLIELLDRTWHLDALAPPDGAVPQLRLADLDPRRYQVELEF 1135

Query: 852  SG-------------------------KINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
                                       ++     + ++ G ID +   Q   ++ ++K++
Sbjct: 1136 WIEASRVDLCALDRVIIRHTLDGRERPELAGSYLNGMLKGFIDLVFEHQGRYYLLDWKSN 1195

Query: 887  HHVPQEIEHIPY---------THIAQLSIYEKILKDSYP--------NKSLVCLLI-YVS 928
               P +  + P           +  Q  +Y   L             ++ L   +  ++ 
Sbjct: 1196 WLGPDDSAYSPEAMRAAIAERRYDLQYVLYLLALHRQLKARLPDYDYDRHLGGAIYVFLR 1255

Query: 929  EPK------VFIIPQNKLNKAFAEI 947
              +          P   L +    +
Sbjct: 1256 GGQAASQGLFMDRPDRALIETLDRL 1280


>gi|317490668|ref|ZP_07949135.1| UvrD/REP helicase [Eggerthella sp. 1_3_56FAA]
 gi|316910230|gb|EFV31872.1| UvrD/REP helicase [Eggerthella sp. 1_3_56FAA]
          Length = 733

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/767 (13%), Positives = 224/767 (29%), Gaps = 134/767 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    I +         ++  + +    ++     +        ++       +  +
Sbjct: 79  AAGEMRRRIRRLTGDNDTGYINTFHGFCVSVLQEDGHALQ-----YPKSFLVLDNADIDA 133

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           +L   +  +  T +    ++  +        ++ K ++     RD               
Sbjct: 134 MLQVIYEERGLTLRDMTFSKARD------MIEIMKLKERPGYYRDMLAMPLEGLRQKYLD 187

Query: 128 TLAKY---LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                      +  + KK    LD+ DLI+    L ++      IR K  + + +I++DE
Sbjct: 188 ATDARDIIFYGYLYQEKKCFG-LDYNDLIVFVLYLFEQNPD---IRLKWQKRLEYIMVDE 243

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD   +Q E++  L              + LF VGD  Q+IY++ GA+ + +L   +  
Sbjct: 244 FQDIDGLQHELMEVLAGY----------HKNLFVVGDPDQTIYTWRGADVRYLLDFDKRF 293

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        + +  ++RS   ++ V + +                  R  + R   
Sbjct: 294 P--------GTRTVMMLENYRSAPRVVAVANSLIEKNRER--------VPKRLAAMRSVH 337

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             TV    +                                A  IA     + G      
Sbjct: 338 GPTVWRHAKSPDGE---------------------------AAWIAQGALALHGEG---- 366

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 +  +D+ VL R    +  +           ++               IKD ++ 
Sbjct: 367 ------VAYRDMAVLYRAHYASRPVEEAL----LRAEVPHAVYSGVPFFGRREIKDALSY 416

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCG---ISK 480
            R +   +DDL F  +  +P  N     +  +  +  E   +++E +++F +      +K
Sbjct: 417 LRLVA-YQDDLDFARVANAPKRNLGARRMAFLREKADELGCSLFEALERFVDDDLFKRTK 475

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            + +++ +       +     +    +L      +   +    E +D L E        E
Sbjct: 476 ARQLLQLVDRFRSSYEGRPVSEVLAAVLSESGYERALRTEGSQERLDNLAELKQSVYEFE 535

Query: 541 QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L   L                ++VR+MTVH AKGLE   VFL      V  
Sbjct: 536 TTCGEEVT-LEHYLAHTALLTNADAMDDAQDKVRLMTVHAAKGLEFAHVFLCSMTEGVLP 594

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                K       EE  RL +V MTRA 
Sbjct: 595 S-----------------------------------RKTDTPQGMEEERRLAFVAMTRAR 619

Query: 660 DQLIICKHSNTSNEKKSNQRTWY-------DMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           D L + +     +E      + +        + + +   +  +   +   ++        
Sbjct: 620 DGLYLTEAEGRGHEGAPRYPSRFLLDIDPAALEFSNKPAERELDDARAAYALADRWIADL 679

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                      +         +      K+ +    +D++ P  ++ 
Sbjct: 680 VRDARFAVGDRVTHAAFGSGRVLAVDSQKRAYEVAFDDLDTPRTISF 726


>gi|304387905|ref|ZP_07370078.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis ATCC
            13091]
 gi|304338002|gb|EFM04139.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis ATCC
            13091]
          Length = 1212

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 130/940 (13%), Positives = 268/940 (28%), Gaps = 164/940 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L  YLN    E KK  
Sbjct: 317  ARLKKGKTPDAAVFAELQKLADFGYDLNALEEAEEATIIRLQLDLIGYLNRSLAEMKKSR 376

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 377  RERGFDDLLLDVHTALTDNPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---- 432

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 433  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 477

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +   ++R              S+   +   
Sbjct: 478  RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAE------------SRLSPKRPA 523

Query: 325  QQESWTSYFDSL--PQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVR 381
             Q  W    D+    ++      A   A  I+  +        N K   +Q+ DI VLVR
Sbjct: 524  VQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVR 583

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +++   +      ++  V   R  +        L AL  F L      +   +L
Sbjct: 584  THNEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVL 639

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +F ++   +        E     E                   +             
Sbjct: 640  TSSIFGYNAQQLHDFNQNESEILHWAE--------------SARTALDNW----NQYGIF 681

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPP 559
                          + +SR     +    + L        +  + ++L + + +      
Sbjct: 682  AAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAG 741

Query: 560  TIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        ++ + V+I+T+H +KGL+ P+V+         +     ++    +   
Sbjct: 742  NNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRT 801

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +               +  D  K        E  RLLYV +TRA +QL I    +T+   
Sbjct: 802  ELLAKAQ---------LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTAD 852

Query: 675  KSNQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                     +                D      +    +  +     +++       P  
Sbjct: 853  NPLAYLIEGLPQDSRETVRQTYDREKDGIAMLKRNWRRLTDNAPAGTDFAFTEDAPPPAA 912

Query: 726  REETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILN 758
                  Q  +                                ++   P  +         
Sbjct: 913  YRGNAGQTAEFAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAM 972

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNA-KLW 816
            PS  +T   ++  S+    +    GL +H++L+          ++  I     K   +  
Sbjct: 973  PS--ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYGFEEI 1030

Query: 817  PAKEYKNLLLSITRL----------------------------LENPMMTTAMSCDS--Y 846
                   +  +  +                                  +    + D    
Sbjct: 1031 WLPAVAEMAEACQKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDIRL 1090

Query: 847  SEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIE 894
             EV  + +  ++    +  ++G ID +       I + +YK++H             +  
Sbjct: 1091 PEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICVIDYKSNHLGADASAYTQQAMDEA 1150

Query: 895  HIPYTHIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
               + +  Q  IY       +  +     ++    +++  
Sbjct: 1151 VAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1190


>gi|294785831|ref|ZP_06751119.1| DNA helicase II [Fusobacterium sp. 3_1_27]
 gi|294487545|gb|EFG34907.1| DNA helicase II [Fusobacterium sp. 3_1_27]
          Length = 919

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 135/872 (15%), Positives = 279/872 (31%), Gaps = 174/872 (19%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            +++   + +     +  +++   +   +     YE+   +N ++DF  L +   ++L  
Sbjct: 160 LRNKINDLNENAIDIESVQTSDIYINFIRSAYKLYEKQLFENNIVDFSYLQVEFLNMLLN 219

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               A    KI+   ++I++DE QD++ IQ +++ S++++           + +  VGDE
Sbjct: 220 N---ADFLEKINNYFDYIMVDEYQDSNKIQEKILLSISKN----------KKNICVVGDE 266

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA  + +L   +  +        +  +I L  ++RS   I+   +K  +  +
Sbjct: 267 DQSIYRFRGASAENILNFSKHFE------EGECKLIVLNENYRSVNHIVEFNNKWINAID 320

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                                       W     + +     + +  +S    +   +  
Sbjct: 321 ----------------------------WHGNRFEKNIVSMRENDYMSSNVFHISGSTLD 352

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
             + R     I  +  ++ I             I VL            L   LK +  I
Sbjct: 353 ENI-RNTVTFIKKLKQSNKIT--------NYNQIAVLF-SHFKDRSAKKLEDALKKE-NI 401

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            V      +  +   +K        IL+          L   L      D+ ++  ++  
Sbjct: 402 EVYSPRTKVFFEMYEVKLTFG---VILACFKKYFPEEALDIYL--LECLDLARLEIRKDN 456

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
               +              +  I+ I E      F S ++ F  +L     +        
Sbjct: 457 EFLAW-------------IKEKIENISEY----SFNSLNEIFYELLNFSYYKNVLKEETP 499

Query: 523 NEVID--VLDEFLNFTLRNE---QNSYSSLQE--------LISELE----QYPPTIKRAH 565
            E      L          +    +   S+++            LE         I    
Sbjct: 500 IEARANHNLAILSKIFKNFQKYVHSKKISIEDDFSIIKYFFTKYLEILRQSRVDEIFSEE 559

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              ++ +  +T+H +KGLE PVV +    S+    + + +   +  L +           
Sbjct: 560 DYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNISEDLSRQTSIDRLINSN--------- 610

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                               ++ R  YV  +RA + L++  +    +E   N + ++  V
Sbjct: 611 ---------SKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSE---NFKPFFYSV 658

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                    + +I L     KDE     ++T                      I    + 
Sbjct: 659 RGVNSLQFDINQINLDEVTKKDERKILSYTT---------------------DIALYRYC 697

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
           P+K  +      +                 D + FN G+I HK ++ I      K++ F 
Sbjct: 698 PMKYFLVREKEYS---------------TFDKKVFNLGIITHKAIEHINKSFSQKQEIFS 742

Query: 806 TSYCTKNAKLWP-------AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
            +Y     K              + ++  + + +++        C    E S   +    
Sbjct: 743 DNYIKNLVKNIYKFQNIDLDNNVERIIDIVKKYIKDE--KDNFKCIKKVEAS---EFRVE 797

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             + I+ G+ID I   +  I I ++KT  +           +  QLS+Y+ +L+  Y +K
Sbjct: 798 D-NYILYGQIDLILEDENEIKIIDFKTGKY---NEIEFSSNYRQQLSLYKLLLQKKY-DK 852

Query: 919 SLVCLLIYVSE---PKVFIIPQNKLNKAFAEI 947
            +   L Y+ E    K  +I    L +    I
Sbjct: 853 DIKTYLYYLEEDDPKKEILIDDEDLKEDLENI 884


>gi|313887981|ref|ZP_07821659.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845936|gb|EFR33319.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 975

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 124/816 (15%), Positives = 274/816 (33%), Gaps = 142/816 (17%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y+++K+    LD+ED+I     LLK       ++ ++    ++IL+DE QDT+ IQ E+I
Sbjct: 278 YKKSKEDISGLDYEDIISYAELLLKNP----LVKGELVSRYSYILVDEYQDTNEIQNEII 333

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           R+ +               +F VGD KQSIY+F G +        +  + R        +
Sbjct: 334 RAFSS------------SNIFIVGDPKQSIYAFRGTDSSSYFSFSKDIEAR-------GT 374

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            + +  ++RS  +I+  +++ F                                 + + S
Sbjct: 375 SLIMNKNYRSDGEIINFINEKFK--------------------------------DLIDS 402

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
             + + + ++      ++S    +            I+++       +    +  +AKDI
Sbjct: 403 YDEMEFSHKEGGGVYLYNSSEISN------------IADL-------AEDFLKKYKAKDI 443

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R       I  +         I     +R  L +   ++ +  +   I S ++ L 
Sbjct: 444 AILSRSNSQIDEIGEVLSA----RGIKYNKGER-SLEEIEILRLIKNILSAIYSPKEFLE 498

Query: 437 FVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           F+ +  S L NF   D+   +    + +E ++ Y     N      ++ + ++ E    A
Sbjct: 499 FLALFNSKLLNFEFKDLVTILNNGINNSEDLFNYKSSQDN-----IKNFLIFLKETREKA 553

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
            +    +    I+         +        + +  F        +N  +  +    ++ 
Sbjct: 554 SYLMIDEVLDEIMDYF----YKLGTLRESDWEYIYRFKEEARDFVENYSNDFRAFERQIS 609

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + + ++T+H +KGLE   + +           + + +         
Sbjct: 610 SMTFEDL------EDGINLLTIHKSKGLEFDGLIISHMDKGKKLGSNNRIIVDRDLGLG- 662

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                    S   N    ++   L++  +EE  R+LYV MTRA  +L++       + +K
Sbjct: 663 -------INSDLSNYSYKEIANKLREIDEEEEIRVLYVAMTRAKKELVLFG-----DHEK 710

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
           +   +++ ++                 S+ + +    E      +  PL+ +   +  + 
Sbjct: 711 ARAGSYFSLLG-------------DVFSLQEYKLSNVEERQVEEKFIPLDIDIKFENRIR 757

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF- 794
           E        +  ++  +  Y      +     T  +           G I+H        
Sbjct: 758 EYYTVTDFINFKRSKKDFYYKYF---LGIDKYTRGQGTNQIMDPKTLGNIVHMFAYKYKK 814

Query: 795 -TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
             L   K ++ I        +    ++       +   LE               +    
Sbjct: 815 IDLKNKKIEDIIKDIFLYYEEEINPEKLNLSKELVLNYLEMEE---------ECIIDKEL 865

Query: 854 KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                 K  ++ G IDQ+     + +I + KT +     +E +  T+  QL +Y  I ++
Sbjct: 866 LFYYDLKGFLVKGYIDQVIKINGDYYILDLKTSY---GNVEDLKKTYENQLILYSAIYEN 922

Query: 914 SYPNKSLVCLLIY-VSEPK--VFIIPQNKLNKAFAE 946
            Y  K +    I+ +      V    + K  +   E
Sbjct: 923 LYKVK-IKAAYIFDLRGKNKIVVETSEEKYKEVMEE 957


>gi|94967078|ref|YP_589126.1| ATP-dependent DNA helicase Rep [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549128|gb|ABF39052.1| ATP-dependent DNA helicase, Rep family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 849

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 108/706 (15%), Positives = 217/706 (30%), Gaps = 114/706 (16%)

Query: 8   SLNESYELIYKDLWP--LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  E  E +   +    L    +S  + +    +      +    +  ++       E  
Sbjct: 63  AAAEMQERVEHLVGGRTLAKPVISTFHSFCVRVLRRDIEALQINGKGYRKDFAIYD-ESD 121

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
              L    + +     K +  + +  +    K  L   Q+ +++  D             
Sbjct: 122 QQSLVKSAMKRLGIDDKQLTVRNVLSRISHAKNHLLDPQEVYLQSGD------------P 169

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            +     +   YE    K   LDF+DL++ TN LLK       +R + ++   ++LIDE 
Sbjct: 170 KVERIAQIYKVYESELAKANALDFDDLLLMTNKLLKTS---TEVRERYNRRFQYVLIDEY 226

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E++R+L            +   + AVGDE QSIYS+ GA+ + +L  ++   
Sbjct: 227 QDTNRPQYEIMRALAG----------TLHNVCAVGDEDQSIYSWRGADIRNILEFEQDFP 276

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT----TIRHRSSR 301
           +          I+ L  ++RST +IL     V       +G +  +       + +  + 
Sbjct: 277 E--------AKIVRLEQNYRSTQNILEAASAVVKNNLKRKGKNLWTERMGGAKVGYYEAP 328

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            G+  ++ + + +        +   E   +         S         Y I   +    
Sbjct: 329 DGENESLFVADYINKYLMIAHDEDDEPKRAAVLYRTNSQSRLFEEAMRRYGIKYNVVGGF 388

Query: 362 IFSNGKKRV---------IQAKDILVLVRK-----RKDTPLITFLTRFLKNDYKISVVGN 407
            F    +               D + L+R      R            +  +  + +   
Sbjct: 389 SFYERAEIKDMISYLKLIQNPSDSVALLRTINTPTRGIGKTTVEQIERIALETNLPLWDA 448

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------------------NFS 449
              I+   L      A  +       D   +   K                        +
Sbjct: 449 LGHIVEQRLMQPRACAALKGFRELIQDARAMLYGKFEERLVETAQVSKPEESDAAEPEIA 508

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
           ++D+          E   +  +       +  +   + +       +  +  +    ++ 
Sbjct: 509 DEDLQDNM-AFDFGELEPDAEEFSPEALGTAEEAAPEKVEGFRSPGENANVSEVLKFLID 567

Query: 510 AKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                +Q  +    E    I+ L E +N  + +        + +   L+           
Sbjct: 568 RTGYIKQLEAEDTPESLARIENLRELVNAAMDSRDRG----ETIADFLDHAALVADTDDI 623

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
               +V +MT+H AKGLE P+VF+V     +F                            
Sbjct: 624 EAGAQVTLMTMHAAKGLEFPLVFIVGMEEGLFPSSRTL---------------------- 661

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                       +     EE  RL YVGMTRA   L++ +      
Sbjct: 662 ------------MNPDEVEEERRLCYVGMTRAMRILVLSRARYRRR 695


>gi|254304120|ref|ZP_04971478.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324312|gb|EDK89562.1| ATP-dependent DNA helicase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 919

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 134/870 (15%), Positives = 276/870 (31%), Gaps = 170/870 (19%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            +++   + +     +  +++   +   K     YE+   +N ++DF  L +   ++L  
Sbjct: 160 LRNKINDLNENAIDIESVQTSDIYINFIKSTYKLYEKQLFENNIVDFSYLQVEFLNMLLN 219

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               A    KI+   ++I++DE QD++ IQ +++ S++++           + +  VGDE
Sbjct: 220 N---ADFLEKINNHFDYIMVDEYQDSNKIQEKILLSISKN----------KKNICVVGDE 266

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA  + +L   +           +  +I L  ++RS  DI+   +K  +  +
Sbjct: 267 DQSIYRFRGASAENILNFSKHFG------EGECKLIVLEENYRSVNDIVEFNNKWINAID 320

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                                       W     + +          +     +   +  
Sbjct: 321 ----------------------------WHGNRFEKNIVSMRLDNILSKSVFHISGSTLD 352

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
             + R     I  +  ++ I             I VL            L   LK +  I
Sbjct: 353 ENI-RNTVTFIKKLKQSNKIT--------NYNQIAVLF-SHFKDRSAKKLEDALKKE-NI 401

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            V      +  +   +K        IL+         +L + L      D+ ++  ++  
Sbjct: 402 EVYSPRTKVFFEMYEVKLTFG---VILACFKKYFPEEVLDTYL--LECLDLARLEIRKDN 456

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
               +              +  I+ I E      F S ++ F  +L     +        
Sbjct: 457 EFLAW-------------IKEKIENISEY----SFNSLNEIFYELLSFSYYKNVLKEEGP 499

Query: 523 NEVID--VLDEFLNFTLRNE---QNSYSSLQE--------LISELE----QYPPTIKRAH 565
            E      L          +    +   S+++            LE         I    
Sbjct: 500 IEARANHNLAILSKIFKNFQKYVHSKKISIEDDFSIIKYFFTKYLEILKQSRVDEIFSEE 559

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              ++ +  +T+H +KGLE PVV +    S+      + +   +  L +           
Sbjct: 560 DYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNVSGDLSRQTSIDRLINSN--------- 610

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                          +    ++ R  YV  +RA + L++  +    +E   N + ++  V
Sbjct: 611 ---------SKISEIEKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSE---NFKPFFYSV 658

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                    + +I L     KDE     ++T                      I    + 
Sbjct: 659 RGVNSLQFDIDQINLDEVSKKDERRVLSYTT---------------------DIALYRYC 697

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
           P+K  +      +                     F+ G+I HK ++ I      K++ F 
Sbjct: 698 PMKYFLVREKEYSTYDKKV---------------FSLGIITHKAIEHINKSFLQKQEIFS 742

Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLE-----NPMMTTAMSCDSYSEVSVSGKINCPKK 860
            +Y     K     +  +L  ++ ++++                   E S   +      
Sbjct: 743 DNYIEDLVKNIYKFQNIDLDNNVEKIIDITKKYMENEKDNFKYIKKVEAS---EFRVED- 798

Query: 861 DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
           + I+ G+ID I   +  I I ++KT  +           +  QLS+Y+ +L+  Y +K +
Sbjct: 799 NYILYGQIDLILEDENEIKIIDFKTGKY---NEIEFSSNYRQQLSLYKLLLQKKY-DKEI 854

Query: 921 VCLLIYVSE---PKVFIIPQNKLNKAFAEI 947
              L Y+ E    K  +I    L +    I
Sbjct: 855 KTYLYYLEEDKPKKEILIDDEDLKEDLENI 884


>gi|163939126|ref|YP_001644010.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
 gi|163861323|gb|ABY42382.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
          Length = 688

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 102/658 (15%), Positives = 204/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEK-LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   +         ++  N  K  K+        K +   +EE K+++  +
Sbjct: 165 ILKELRLKDDYDAETILAMISLEKNNLNRPKDVKAKTPVEQEFKEVYERFEEVKQRHNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++    +L+       +  ++ +  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLEMYYMLENN---TPLLTQLQERFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +        T+                   
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVRNDGIQPFYARPATTLD------------------ 365

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                             A +I   I   + +              KD  +L R    + 
Sbjct: 366 -----------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  I+ ++   R +L      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIRPVLDHLRLVLEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFINEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDTVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|6626267|gb|AAF19532.1| putative helicase 2 [Bradyrhizobium japonicum]
          Length = 591

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 157/333 (47%), Gaps = 8/333 (2%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
            G+   +  E +  ++   P+   S  +  ++ ++E G+ +   +A  L++A +      
Sbjct: 231 LGVDAADRIEDVETEILDGPFLPRSRWD-DIAFALEDGSKSDNDQASRLREA-KAFSGGA 288

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
           +       FLT +  P+K ++T++    +P +    +        + ++     M   T 
Sbjct: 289 QVDAYLGVFLTDEKLPRKAVLTKKFCDHNPSVARLFENEAQRLAGLIEKRRAVTMRDRTA 348

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           A L +A    A+Y   K++  +LD++DLI  T  +L +   S W+ YK+D+ ++H+LIDE
Sbjct: 349 ALLHIATAAAANYRREKQERGLLDYDDLIDKTLAMLNR-VSSGWVHYKLDRGVDHVLIDE 407

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            QDTS  QW+++  +  +F  G+       RT+FAVGD KQSI+   GA+P+     +R 
Sbjct: 408 AQDTSPRQWDIVAHIISEFTAGEGAREGLNRTIFAVGDGKQSIFWCQGAQPREFDARRRE 467

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             ++ T AG KF  +    SFRS A IL  VD VF  P   + +         H +    
Sbjct: 468 LHRKFTAAGLKFDPVAFTYSFRSGAAILHSVDHVFRDPAIYKSIHSVEIGHPLHNALADA 527

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
               ++LW+   +          E W + F++L
Sbjct: 528 GPSVIELWDLAEADDRQD----IEGWRAPFEAL 556


>gi|229166170|ref|ZP_04293930.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH621]
 gi|228617268|gb|EEK74333.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH621]
          Length = 688

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 104/658 (15%), Positives = 208/658 (31%), Gaps = 118/658 (17%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDR-FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +     N  K  K+        K +   +EE K+++  +
Sbjct: 165 ILKELRLKDDYDAETILAMISLEKNNLNRPKDVKAKTPVEQEFKEVYERFEEVKQRHNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D+++    +L+     A +  ++ +  ++I +DE QDTS  Q+E+++ L        
Sbjct: 225 DFDDILLEMYYMLENN---APLLTQLQERFHYIEVDEFQDTSYAQYEIVKLLA------- 274

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS 
Sbjct: 275 ---TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSN 323

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+ + ++V  + +        S      +                             
Sbjct: 324 PFIVGLGNEVIKLNQERFDKELYSVRNDGIQPF--------------------------- 356

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
            +     +L +       A +I   I   + +              KD  +L R    + 
Sbjct: 357 -YARPVTTLDE-------ANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR 399

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
               L   L       +         +H  I+ ++   R +L      S   +L +    
Sbjct: 400 ---SLLDQLTIHKIPFIKHGASQSFYEHSLIRPVLDHLRLVLEPFRLESLSNILPTMYIG 456

Query: 448 ----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S  +  +         ++  ++    +    + + V + I + I   +   P   
Sbjct: 457 RDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKA 515

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+  K    +++         +  +     L     S +   ++ + L+     I+ 
Sbjct: 516 LKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFINEAIQG 575

Query: 564 AHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V +M++H AKGLE P VFL+     +  H    K           
Sbjct: 576 QKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD---------- 625

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                           ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 ----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|150866726|ref|XP_001386414.2| protein required for proper timing of committment to meiotic
           recombination and the transition from Meiosis I to
           Meiosis II [Scheffersomyces stipitis CBS 6054]
 gi|149387982|gb|ABN68385.2| protein required for proper timing of committment to meiotic
           recombination and the transition from Meiosis I to
           Meiosis II [Scheffersomyces stipitis CBS 6054]
          Length = 908

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/690 (15%), Positives = 206/690 (29%), Gaps = 151/690 (21%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
           L +E  N    + A  + +       +     L S    +    + N  ++       D 
Sbjct: 116 LGIERYNIADDRDADHILKEMLAGLSDLELDTLDSLPDEETVIFRPNSGSESKKSSGYDT 175

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
               KK + +  K++     +  ++ + +           Y+   ++N +LDF+D ++  
Sbjct: 176 ----KKIKRQISKLKSSGVKHDTYERSASHNKALSLFYRKYQHKLQENNLLDFDDCLLYC 231

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L+    V  +++        H+L+DE QDT+ IQ +++           +       +
Sbjct: 232 YLLVTSFPVLNFVQ--------HVLVDEFQDTNEIQLQLMYEFARGHPTDPSKRD---NV 280

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD  QSIY+F  A+     + ++   KR         II L  ++RST+DIL + +K
Sbjct: 281 TIVGDPDQSIYAFRDAQAINFEKMEKHYLKRYQE---PCRIISLTENYRSTSDILDISEK 337

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +    +     S  S T    +                                      
Sbjct: 338 IMRQQQKRVVKSLKSQTKRSFKPVYYNL-------------------------------- 365

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
              +SA   A+ + Y I +++                 DI VL+R    T  I       
Sbjct: 366 ---TSAEEEAKWVCYQIEHIMA-------LPNTPFMYSDIAVLIRAAYQTRAIENEL--- 412

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
               +I           +   +  ++   R +    D ++++  L  P   F +  I  +
Sbjct: 413 -VRRRIPYFMIRGRAFWERKEVVAILDYLRVVAHDNDRIAYLRTLNFPKRGFGDKTIQAV 471

Query: 457 CTQ--------RHETETVYEYIQ-------KFANCGISKFQHVIKYIHELIHIAQFCS-- 499
                      R    +    +        K +          +++IH+   +       
Sbjct: 472 ERALELETLAGRDSVYSALTAMVQGENNELKLSTKMKQTLSSYLQFIHKAREMLSNLDAE 531

Query: 500 --------------PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN------ 539
                           + F LI      +Q+F      E+   + E              
Sbjct: 532 ITNGTLDSEKRSSKLAELFELIYVHSGLKQEFSKDENQEL--NIKEVEKQFCEFVPRDEE 589

Query: 540 ------------EQNSYSSLQELISELEQYPPTIKRAHSANHN----EVRIMTVHTAKGL 583
                        Q+  + L   I  +  Y     +  +         V + T+H +KGL
Sbjct: 590 LPLYHGGSESEQTQDDRNYLARFIHSVGLYETDDDKKENEKKESFHGRVALSTIHGSKGL 649

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P+VF+      +                                      I +     
Sbjct: 650 EWPIVFVPGLSEGLLP--------------------------------ARFAIANGGPEA 677

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            +E  R  YV +TRA   L +  +++  + 
Sbjct: 678 IDEERRCFYVALTRAKTLLYMSSYTSFGSG 707


>gi|153006848|ref|YP_001381173.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152030421|gb|ABS28189.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 1083

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 136/964 (14%), Positives = 286/964 (29%), Gaps = 88/964 (9%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +     S   S   + K L   P        + +  ++      + ++A+   QA+  + 
Sbjct: 155  RAALERSAAASRAGLEK-LLGKPTLDNVTYLEKLDRTLRPLLAKLEEQARETGQAASKKR 213

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY---- 117
                  L++        + +      +         +KL+    E++ + +  +      
Sbjct: 214  AAAARRLVADLNRGLVPSWKSQFQLAQEVD-----MKKLRTWSAEYVDLANEHHASAGFH 268

Query: 118  -KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
              +         LA      +   K    V+DF D++    ++L++      +R  +   
Sbjct: 269  DDVLGMQAQLFALAGEALGTFVAEKTAAGVVDFGDMLARAREVLERP----AVREALRDR 324

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            ++ +L+DE QDTS +Q  V+ +L              R    VGD KQ+I++F G +P+ 
Sbjct: 325  LDLVLVDEFQDTSPLQLAVVSALAGL----------ARRSIWVGDRKQAIFAFQGTDPEL 374

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +             A    +   L  S+RS  D++ +  ++F+      G  +D    + 
Sbjct: 375  MTAAT-------EAALGGRTPDILASSWRSRPDLVAMTSELFARALAPHGFPDDQVRIVA 427

Query: 297  HRSSRI--GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
             +         G  + W  +  + +      + S      +   E  ++           
Sbjct: 428  AKPDHPRLRDQGAFECWRWMPEKVERNGKDVKASEPDALGAGVAELLSNPP--------- 478

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL-- 412
             ++           R    +D+ +L R       I    R      K+S+ G        
Sbjct: 479  -LVRERGNAEVEAVRPASFRDVAILARSNARCQQIAAALRARGIPAKVSLGGVTLTPEGV 537

Query: 413  ------------TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
                         D +A   +  LG    S  D      +L+   +  +          R
Sbjct: 538  LARAALALLADPRDGVAALQVAWLGGAASSDPDGWLSRRLLEIASWRATAKAAEGKGEHR 597

Query: 461  HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                  +E   + A  G+ K     + +     +           L+    +  Q+  + 
Sbjct: 598  PPAPLAFEDDGRVA--GLRKAVAAAERLSPAQALDLALRTAGVAELVRSWPEPAQRVANL 655

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                      E L    R+       L   ++ L+      K+A  ++ + V ++T H A
Sbjct: 656  EALRAEAAAYEQLCEAQRSAATML-GLVAHLASLDAGDDAGKQAAPSSEDAVTVLTWHKA 714

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN----------- 629
            KGLE PVV L               +   P  +    +     +                
Sbjct: 715  KGLEWPVVVLSHLDFSRERGVFEVAVEPAPRFDFARPLEGRWVRYWPWPYGGMSKELALL 774

Query: 630  --NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
               + +   +   ++ + E  RLLYVG TR  D L++      + +      +   +V  
Sbjct: 775  DRALETAEARRATEADRRERLRLLYVGFTRPRDLLVLVARC--TEKSGPATASLDLLVGA 832

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                           +        +      P   P       +  +       +   P 
Sbjct: 833  KGEPLLAAPFEDQAGAAIGVGQQEWRCRVRTPSGLPPATPAPARSAVQWYASAPRAERPR 892

Query: 748  KNDINEPYILN--PSTIDTKGKTNLESLLSDNQTFN-RGLIIHKLLQVIFTLPEHKRKNF 804
            +        L   P  +  +      +L +  +     G  IH  L       +  R   
Sbjct: 893  ERLNPSAEPLAGTPRVVQVERLGGRHALAASPEQAGPTGDAIHAFLAADQGGTQEARLTM 952

Query: 805  ITSYCT--KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
             T      +               ++   L+            Y E  V  ++  P    
Sbjct: 953  ATRILKAFRVVGAVAPDTLLAASDALRTWLD----ARYPGATWYREWPVRARLGGP-TPR 1007

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQEIE-HIPYTHIAQLSIYEKILKDSYPNKSLV 921
            ++ G +D          + ++K+     +E +  +   +  QL  Y ++L D+   K + 
Sbjct: 1008 LVVGDVDLFLELPDGFVLVDHKSFPGSERERDRRLVEEYAPQLGWYARVLADAL-KKPMK 1066

Query: 922  CLLI 925
               +
Sbjct: 1067 AAFV 1070


>gi|291551268|emb|CBL27530.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14]
          Length = 954

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 106/837 (12%), Positives = 228/837 (27%), Gaps = 155/837 (18%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           +     + + Y+E  ++  ++DF  +      LL +      I  ++  ++ +++IDE Q
Sbjct: 179 IRTLGRVLSVYQEMLEEGNLIDFSTIQTECYKLLMQN---KQILEELQDKLQYLMIDEYQ 235

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ IQ +++  L           +    +  VGD+ Q +Y F GA  + +L      + 
Sbjct: 236 DTNYIQEQIVFLL----------GAKHHNICVVGDDDQGLYRFRGATIRNILEFPHKFEN 285

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                 ++  II L +++RS +DI+   ++  S+    +                     
Sbjct: 286 ------EECKIIPLVVNYRSNSDIVDFYNEWMSMTSGHKFKFS----------------- 322

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
               W++   Q   + + + +  +     L  +        +I   I  +  +  +    
Sbjct: 323 ----WDRYRYQKKIEPHVKSDIQSPAVVKLFSKDDEDEWHEKILGFIKELKESGKLTD-- 376

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    +  L    K   +             I+V      +      IK  +    
Sbjct: 377 ------YNQLAFLFSSVKHQRV--TALASFLERNGINVYSPRSDMFFKRDEIKLALGCLM 428

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----ETETVYEYIQKFANCGISKFQ 482
            +           ++K     F    +      R       E V     K     I K  
Sbjct: 429 LM-------FPRYVMKLEKQEFDFLQVEHYRYYRECIVAANEYVTRADNKELLQFIRKHG 481

Query: 483 HVIKYIHELIHIAQFCSPHDFFT-LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                +      A     +  F              +          L        + E 
Sbjct: 482 KAHAGLTGTTDYAYSGLLYKLFMFRPFSDILDTDMSVGVVDIRPTRNLALLTQIIGKFEY 541

Query: 542 NSYSSLQELISELEQY-----------------PPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +    S +++                        A  A    V  +T+H +KG+E
Sbjct: 542 LHRVDVFN-GSYIDRNTELLFNLYLKLLYDGGISEYEDEAEYAPSGCVSFLTIHQSKGME 600

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            P+VF+    +            +       P                    +   ++  
Sbjct: 601 FPIVFVDSLSNVPRKTYKDLMTEVEEKYFHRP------------------AFEPYDQTKY 642

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            ++ RL Y   +RA + L++    N                                   
Sbjct: 643 FDFWRLYYTAFSRAQNLLVLTCDENKRT-------------------------------- 670

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                 +  +   + E   ++ ++        Q + K       +  +   +     +  
Sbjct: 671 -----PSQYFRDIYDEVQSVDSDKFDISEFSFQSVKKVNLKNSFSFTSHITVYETCALQY 725

Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE---------HKRKNFIT----SYCTK 811
           K    LE +         G ++H+ ++ I                   +      S    
Sbjct: 726 KFYKELEFMPVRQNAMMFGTLVHETIEDIHRAAIRGEVDKITNDNIATWFESNYNSLVKS 785

Query: 812 NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
                   +    L  + R  E      A    +         ++  K+D II G+ID +
Sbjct: 786 EHTYLAEPQRNTALSQVERYAERMDGKWASVQQA------EVNVSLVKEDYIIDGKIDLV 839

Query: 872 SISQQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
                 + I ++K+       ++      +  QL IY  +++     K     L Y 
Sbjct: 840 KGVDGTVEIVDFKSERKPDMIKMRERLEHYRRQLQIYAYLIEQRTGQKVSKMHLYYT 896


>gi|325831374|ref|ZP_08164628.1| putative ATP-dependent helicase PcrA [Eggerthella sp. HGA1]
 gi|325486628|gb|EGC89076.1| putative ATP-dependent helicase PcrA [Eggerthella sp. HGA1]
          Length = 730

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/767 (13%), Positives = 224/767 (29%), Gaps = 134/767 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    I +         ++  + +    ++     +        ++       +  +
Sbjct: 76  AAGEMRRRIRRLTGDNDTGYINTFHGFCVSVLQEDGHALQ-----YPKSFLVLDNADIDA 130

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           +L   +  +  T +    ++  +        ++ K ++     RD               
Sbjct: 131 MLQVIYEERGLTLRDMTFSKARD------MIEIMKLKERPGYYRDMLAMPLEGLRQKYLD 184

Query: 128 TLAKY---LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                      +  + KK    LD+ DLI+    L ++      IR K  + + +I++DE
Sbjct: 185 ATDARDIIFYGYLYQEKKCFG-LDYNDLIVFVLYLFEQNPD---IRLKWQKRLEYIMVDE 240

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD   +Q E++  L              + LF VGD  Q+IY++ GA+ + +L   +  
Sbjct: 241 FQDIDGLQHELMEVLAGY----------HKNLFVVGDPDQTIYTWRGADVRYLLDFDKRF 290

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        + +  ++RS   ++ V + +                  R  + R   
Sbjct: 291 P--------GTRTVMMLENYRSAPRVVAVANSLIEKNRER--------VPKRLEAMRSVH 334

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             TV    +                                A  IA     + G      
Sbjct: 335 GPTVWRHAKSPDDE---------------------------AAWIAQGALALHGEG---- 363

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 +  +D+ VL R    +  +           ++               IKD ++ 
Sbjct: 364 ------VAYRDMAVLYRAHYASRPVEEAL----LRAEVPHAVYSGVPFFGRREIKDALSY 413

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCG---ISK 480
            R +   +DDL F  +  +P  N     +  +  +  E   +++E +++F +      +K
Sbjct: 414 LRLVA-YQDDLDFARVANAPKRNLGARRMAFLREKADELGCSLFEALERFVDDDLFKRTK 472

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            + +++ +       +     +    +L      +   +    E +D L E        E
Sbjct: 473 ARQLLQLVDRFRSSYEGRPVSEVLAAVLSESGYERALRTEGSQERLDNLAELKQSVYEFE 532

Query: 541 QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +  L   L                ++VR+MTVH AKGLE   VFL      V  
Sbjct: 533 TTCGEEVT-LEHYLAHTALLTNADAMDDAQDKVRLMTVHAAKGLEFAHVFLCSMTEGVLP 591

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                K       EE  RL +V MTRA 
Sbjct: 592 S-----------------------------------RKTDTPQGMEEERRLAFVAMTRAR 616

Query: 660 DQLIICKHSNTSNEKKSNQRTWY-------DMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           D L + +     +E      + +        + + +   +  +   +   ++        
Sbjct: 617 DGLYLTEAEGRGHEGAPRYPSRFLLDIDPAALEFSNKPAERELDDARAAYALADRWIADL 676

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                      +         +      K+ +    +D++ P  ++ 
Sbjct: 677 VRDARFAVGDRVTHAAFGSGRVLAVDSQKRAYEVAFDDLDTPRTISF 723


>gi|317405925|gb|EFV86204.1| nuclease/helicase [Achromobacter xylosoxidans C54]
          Length = 1190

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 133/1017 (13%), Positives = 272/1017 (26%), Gaps = 119/1017 (11%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--KKAQTLQQASQ 58
            L+     ++ E  + + + +       +    +  +  ++ G              +   
Sbjct: 211  LEETLAEAIGEDLDALCEAMPLGWAEALCGPARLAAAQLQDGGEDDRLAPLRDWTDELPA 270

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIIT----QEINKKSPDLKEKLKKS---------QD 105
                 +++  ++   LT   + +K +                   L+ +           
Sbjct: 271  DAEALDQWRAVAHLLLTGTGSLRKTVNKNLGFPAKCAHKEPFVAWLESADGDAPWVRRLA 330

Query: 106  EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                I     +   ++   A L       A           +DF ++       L   D 
Sbjct: 331  AVRDIPAPRLSDAQWEVLGAQLMTLALAVAQLRLRFADTGEVDFIEISQRAAAALGSADD 390

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +  K+D  I H+LIDE QDTS  Q +++++LT  +  G       RTLF VGD  QS
Sbjct: 391  PGELLLKLDASIRHLLIDEFQDTSQTQLDLLKTLTSGWQAGDG-----RTLFLVGDPMQS 445

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENA 284
            IY F  AE    L   +           +   + L  +FRS A I+  V++ F+      
Sbjct: 446  IYRFRKAEVGLFLEVAQR-----GVGELQPGFLNLTDNFRSQAGIVDWVNESFAQLLPKR 500

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
               +  +       +           +    S+       +Q    +        +  + 
Sbjct: 501  SDAAAGAIKYSPSSAFHEALPDPAVRFHPAWSRGGGVPAEEQAENIAVGLVRQALADHAG 560

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAK--------------DILVLVRKRKDTPLIT 390
                +A  +        +     +  I+ +              D++ LVR         
Sbjct: 561  SKHPVAILVRARSHLGNLTRRLAQEGIRCRAVDLVPLALRPVVADLVQLVRALSHPGDRL 620

Query: 391  FLTRFLKNDY-KISVVGNDRFILTDH--LAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
                 L+  +  +++    R    DH       L  L R   ++  D   V  + + +  
Sbjct: 621  AWLSVLRAPFCGLTLESLQRLFGADHVTPVPVLLERLLRPAPARPADAPPVRAVSATVPA 680

Query: 448  FSEDDIFKICTQRHETETVYE--------------------------------YIQKFAN 475
             S        T+      +++                                       
Sbjct: 681  ASRQGSLFDDTENPAQGALFDDAASPTPPGDPAGTTRQTGAALPPDDAGARLSAEALLHP 740

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
               ++ + V   + +  + +       +   +     G   +         + L + +  
Sbjct: 741  DEYARLRQVAAVLLDSRNASGAMPFAAWIETLWRRLGGPALYSGPSVANDAESLFQLVER 800

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +     ++L   I+ L   P             V IMT+H +KGL+   V L     
Sbjct: 801  LAPHGAIDPAALDAGIARLFAAPDAADEEA-----AVEIMTMHKSKGLQFETVILYGLHR 855

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                      +    S       P+        + +   L     +    E +RLLYV  
Sbjct: 856  APR-GDQPPLVRFEQSGGRVLFGPVKPRAETEADPVSRYLGAREARRASYEIDRLLYVAA 914

Query: 656  TRASDQLIICKHSNTSNEKK-SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            TRA  +L +  H         +   +   ++   +                +      EW
Sbjct: 915  TRARKRLHLVGHVAIDGATGQAKTPSSASLLGRLWPCLTTPMPPATDGDSAEPRDDGPEW 974

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                      +    + +  D    P    +                     +     L 
Sbjct: 975  QGEPLRRVHRDGLAQLARQADVAISPGFAAAARG------------AWGDSAEHPAWQLE 1022

Query: 775  SDNQTFNRGLIIHKLLQVI--------FTLPEHKRKNFITSYCTKNAKLWPAKE--YKNL 824
            S       G + H  L  I               R   +    T+        +   + +
Sbjct: 1023 SGYDAA-IGTLAHAWLARIGQDGIAAWPAEALAHRLPAMRRQLTRAGIPASQADTAAEAV 1081

Query: 825  LLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
            L ++   L +      +S   +  E      +      + +   ID    ++    I +Y
Sbjct: 1082 LDTLQSTLADDRGLWLLSQSGARREWP----LIDAAGKVSV---IDLALSTEDGWLIVDY 1134

Query: 884  KTHHHVPQE-----IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            KT    P E      + +   H  QL  Y   +      +     L +        +
Sbjct: 1135 KTGRPQPNESPAAFAQRMRQRHGDQLLRYCAQVTALD-GRKARAALYFPRARAWIDL 1190


>gi|229016581|ref|ZP_04173520.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1273]
 gi|229022789|ref|ZP_04179313.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1272]
 gi|228738601|gb|EEL89073.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1272]
 gi|228744668|gb|EEL94731.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1273]
          Length = 688

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/659 (15%), Positives = 206/659 (31%), Gaps = 120/659 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRSRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 165 ILKELR-LKDAYDAETILAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++    LL+     A +  ++ +  ++I +DE QDTS  Q+E+++ L       
Sbjct: 224 IDFDDILLEMYYLLENN---APLLTQLQERFHYIEVDEFQDTSYAQYEIVKLLA------ 274

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               +    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS
Sbjct: 275 ----TPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRS 322

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+ + ++V  + +        S      +        T+                  
Sbjct: 323 NPFIVGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD----------------- 365

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A +I   I   + +              KD  +L R    +
Sbjct: 366 ------------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVS 398

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                L   L       +         +H  I+ ++   R ++      S   +L +   
Sbjct: 399 R---SLLDQLTIHKIPFIKHGASQSFYEHSLIRPVLDHLRLVIEPFRLESLSNILPTMYI 455

Query: 447 N----FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +  +         ++  ++    +    + + V + I + I   +   P  
Sbjct: 456 GRDECISFIEREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKK 514

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               I+  K    +++         +  +     L     S +   ++ + L+     I+
Sbjct: 515 ALKEIIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESATRFTDIPAYLQFINEAIQ 574

Query: 563 RAHS-------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V +M++H AKGLE P VFL+     +  H    K          
Sbjct: 575 GQKEMEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD--------- 625

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                            ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 626 -----------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 667


>gi|242279801|ref|YP_002991930.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
 gi|242122695|gb|ACS80391.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
          Length = 707

 Score =  219 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 102/641 (15%), Positives = 210/641 (32%), Gaps = 127/641 (19%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L + + KS+++ + I    N+     +T A  +  + +   Y   KK++ ++D++DL+  
Sbjct: 142 LLDMISKSRNKELSIDTLVNSEAFHLATYA--SEMEQIAKGYAVYKKQHGLMDYDDLLFY 199

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
             +LL K     ++R  +     +I++DE QDT+L+Q  ++  L                
Sbjct: 200 LEELLTKD---KFLRNSLRSRYQYIMVDEYQDTNLVQARIVGLLAG----------KNGN 246

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           + AVGD+ QSIYSF GA+   +L+   I +           I+ L  ++RST  IL + +
Sbjct: 247 VMAVGDDAQSIYSFRGADVTNILKFPDIFE--------DVKIVRLEQNYRSTQPILDLTN 298

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +    E        +  T   +                                     
Sbjct: 299 AILDGAETKFDKKLFTEQTWGDKP-----------------------------------Q 323

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           L    S    + R+   I  +           ++    +++ VL R    +  +    + 
Sbjct: 324 LMVPLSDFSQSNRVLDRIIEL-----------QKKHGPEEVAVLFRAGYQSYGLEVALKR 372

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
           L     +           +   IKD++A  R + +  D +++   L   +         K
Sbjct: 373 L----GVGFKKYGGLKFNEAAHIKDVLAFMRLVSNPADIIAWQRTL-GHIKGVGPKTATK 427

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI--LGAKKG 513
           I        +  +             Q +++ +  L       SP     +I  L     
Sbjct: 428 IAQA---VISADQKALGKFTKKYQLLQDILRDLDGLRKK--NSSPATCLEIIVPLYRPLL 482

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             Q+   +       +++        +      L+  +++L    P          + V 
Sbjct: 483 VAQYPDDY-PRREAGIEQLSQIASNYD-----DLEFFLTDLCL-DPDQHSEEEKKEDVVT 535

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           + T+H+AKGLE   V ++D     F  +                                
Sbjct: 536 LSTIHSAKGLEWNAVIIIDLVEDRFPSR-------------------------------- 563

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE-----KKSNQRTWYDMVYDS 688
                 K    EE  RLLYV  TRA  +LI+C  ++ + +     + +    +   + ++
Sbjct: 564 --KSMQKPQEYEEERRLLYVACTRARKELIMCAPASINRKNTDFSEPAVPSPFLRELDNA 621

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
             ++ +                   ++   P  +  ++   
Sbjct: 622 LFDELQESYSGGMAKKKNAPVNPAAYTDTAPSISASKKPSP 662


>gi|325298044|ref|YP_004257961.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
 gi|324317597|gb|ADY35488.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
          Length = 1071

 Score =  219 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 129/809 (15%), Positives = 260/809 (32%), Gaps = 97/809 (11%)

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            AH +E  +    L    L+ +TN LL        +A++  KI   I+ ++IDE QDTS +
Sbjct: 344  AHIDEELRLQNQLHNRFLLSDTNALLHSLMNEGDAAFVYEKIGTSIDRVMIDEFQDTSRM 403

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QWE    L ++    +           VGD KQSIY +   + K +           T++
Sbjct: 404  QWENFHLLLKESLAQREGS------LIVGDIKQSIYRWRNGDWKILAGL-------NTDS 450

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
              +   + L  ++RS A I+   +  F+          +                     
Sbjct: 451  SLRIRELTLQTNWRSEARIVRFNNIFFTSACQTLNQRYEEEKGESCLPLLNAY------- 503

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
               V Q  ++   +     ++    P++S A      +A     +I             I
Sbjct: 504  -SDVCQQTAKQTEKGYVKLTFLTDTPEQSYAEATLEELAKETECLIRHG----------I 552

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            +  DI +LVRK K  P I              +V ++ F L   LA+  ++   R++ S 
Sbjct: 553  RTNDIAILVRKNKTIPAIADYF---DKHTPYRIVSDEAFRLDASLAVCMMIDGLRYLTSP 609

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            ED ++   +  +            + T       + + I  +            ++I EL
Sbjct: 610  EDRIAGARLAVAYQREI-------LHTHTTLNRILQDDISTYLP------AGFTEHIAEL 656

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQNSYSSLQEL 550
              +  +              +         G E  D  L  F +      Q   S     
Sbjct: 657  RLMPLYE-----------LLEKLFLLFDMKGIEHQDAYLCAFYDAVTEYMQQHSSEPTAF 705

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            I+  ++               +RI+++H +KGLE   V +     ++ +  +   +    
Sbjct: 706  ITYWDERLHEKTIPSGE-IEGIRILSIHKSKGLEFHTVLIPFCDWKMENETNNHLIWCQA 764

Query: 611  SLNDDP-----GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +         +      S    ++        +     +   LLYV  TRA   LII 
Sbjct: 765  QDDGLEPFNQLDLVPVNYSSAMAESVFKASYWDERLQLWVDNLNLLYVAFTRACKNLIIW 824

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              +    +   +               E+        S  ++       +    E  P E
Sbjct: 825  GRTGNRQKGTVS------------ELLEQTVPQLPIWSTREESDEDTPVTYTFGELFPSE 872

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
             +            P+ +   +++          +      ++  ES     +   +G +
Sbjct: 873  MKAEKHSDNPLATPPESVTVRVESIETPIEFKQSNQSADFIQSEDESEEERKEYIRQGQL 932

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC-- 843
            +H++   I    E++    I+        L   K+ + +       L +P +        
Sbjct: 933  LHQVFASI--RTENELPQAISRLV-FEGVLESEKQAEQIEELARWALAHPHVRDWYDGTW 989

Query: 844  DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            + Y+E S+   I   +   + + R D++ +    + + ++K               + +Q
Sbjct: 990  ELYNECSI---IYADEAGNLQTRRPDRVMMKDGKVIVVDFKFGKK--------KQGYRSQ 1038

Query: 904  LSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            +  Y  +L       ++   L YV E ++
Sbjct: 1039 VKEYMNLLTQM-GYSNVKGYLWYVFENEL 1066


>gi|212537775|ref|XP_002149043.1| ATP-depentend DNA helicase, putative [Penicillium marneffei ATCC
           18224]
 gi|210068785|gb|EEA22876.1| ATP-depentend DNA helicase, putative [Penicillium marneffei ATCC
           18224]
          Length = 1006

 Score =  219 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 104/686 (15%), Positives = 200/686 (29%), Gaps = 151/686 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE A   + +LD++DL++   DLL++              +  +L+DE QDT++I
Sbjct: 174 QVYREYEAALASSNLLDYDDLLLRCVDLLRQHPHCV-------SNVQTVLVDEFQDTNVI 226

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E++                 + +  VGD  QSIY F  AE K + R +R         
Sbjct: 227 QYELMNLFAAQ----------NKRITIVGDPDQSIYGFRSAEIKNLERMQRRYPN----- 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               S++ L  ++RS+  IL   ++V              T  +                
Sbjct: 272 ---TSVVLLEDNYRSSGSILGSAEQVIEQDTARPVKKLHPTHGVGTMPVLRKLP------ 322

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                        +A+  A+ +   I   I           +++
Sbjct: 323 -----------------------------TAAAEAQWMVMEIKRCI-------TLTGQLL 346

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           ++ D  +L+R    +  I            I           D + I+ L+   R I   
Sbjct: 347 KSSDFAILLRSAALSRQIESEL----GKQGIPYRMVGGSRFFDRVEIRLLLDYLRVISHP 402

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGIS----------- 479
           E++ +   ++  P     ++ +  +          ++ +I+  A    S           
Sbjct: 403 ENNDALARIINVPTRKIGDETLKSLTAGAESANLPLWTFIKDVAQGRRSCQKGLSKAANI 462

Query: 480 KFQHVIKYIH----ELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNE-VIDVLDEF 532
               ++  I     +L       SP      ++     R+   +      E     ++E 
Sbjct: 463 GLSVLVGLIEASRQKLHDCIDESSPRVLLEFVISKLGFREYLTATYPLDEENRWANVEEL 522

Query: 533 LNFTLRNEQN---------------------SYSSLQELISELEQYPPTIKRAHSANHNE 571
           L     +  +                        +L   ++ +                +
Sbjct: 523 LAQAGDSSTSYSQQDDILPEIEGLEQHQGHIGEEALSRFLANVALSTEVTTEEGDQPQEK 582

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V I T+H AKGLE PVVF+      +  H                               
Sbjct: 583 VTISTIHAAKGLEWPVVFVAAVYEGIIPHS------------------------------ 612

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                   +    +E  RLLYV MTRA   L +      S   +  + + + +       
Sbjct: 613 --------RAEDSDEERRLLYVAMTRAQALLYLSLPRRDSKNGEETRTSSF-LPPSIVEA 663

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
             R    KL +                 E      +  +  L D+   P   ++      
Sbjct: 664 KFRAIGPKLVDKTIFAIADILGREHPSQEAIVKGLQARLPSLNDDLWTPDGDYTGDTATR 723

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDN 777
            +    + S++D +G+          
Sbjct: 724 WDGSTAS-SSLDARGQAQEHWTKRRR 748


>gi|296392994|ref|YP_003657878.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296180141|gb|ADG97047.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 1062

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 128/1026 (12%), Positives = 270/1026 (26%), Gaps = 186/1026 (18%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +      L    +W L Y  V++    +S+            A   + A Q    +    
Sbjct: 139  AAGGRVVLSEAGMWQLAYETVANWESLLSVDRGVAGVAEAVTALGRRMAEQLAAPDRVL- 197

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                                   + +  ++   K  +       +      + ++    L
Sbjct: 198  -------------------AAAEELARLVRTLPKGPRQRAEPSLELREAVAVQQARAELL 238

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             +   +    ++  + +  +DF        +L ++      +R +       +L+DE QD
Sbjct: 239  GVVARM----QDRLRSSGAVDFATQTARAAELAQRFP---QVRAEECAAHRVVLLDEYQD 291

Query: 188  TSLIQWEVIRSLTEDF---FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            T   Q  ++R+L          +   ++   + AVGD  Q+IY++ GA    +   +   
Sbjct: 292  TGHAQRILLRALFGPPRIGGAARGGGANGAAVTAVGDPHQAIYAWRGASSGNLAAFQADF 351

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                         + L  S+R+ A +L + +   +    A      +   +  R      
Sbjct: 352  GA--------PEALTLMTSWRNPASVLDLANLTAAPLRRAG----IAVPELAARPDAPAG 399

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
               V L++                                 A      I+  +      S
Sbjct: 400  EVRVALFDD--------------------------------AAAERAWIAERLRHAAQTS 427

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                       + VLVR+  D   +            +         L     + +L+A+
Sbjct: 428  P------TRPSMAVLVRRNADAVPVAEALTA----AGLEAQVIGLGGLLATPQVAELVAM 477

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ------------- 471
               I       + + +L SP +     D+  +  +  E                      
Sbjct: 478  LELIADPGASAAALQVLTSPRWRIGARDLAALAQRAQELGPGRARPLAPRDPAELVEQLT 537

Query: 472  ------------------------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
                                    +++  G ++   +   +  L          +F TL+
Sbjct: 538  AVLADDGSERAGLGDALADLGDQGRYSAAGYARLALLAGELDRLRGQLAR-PLPEFVTLV 596

Query: 508  LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ-----NSYSSLQELISELEQYPPTIK 562
                            +  + L  F +    + +        +SL  L+  +       +
Sbjct: 597  ERVTG----LAVEADAQAKERLSAFASVVAEHAKAAELLGGSASLAGLVGYVRLAETVER 652

Query: 563  R----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                   + +  +V+++TVH AKGLE  VV +    + VF     +   I       P  
Sbjct: 653  GLPVGEVAPDPRKVQVLTVHAAKGLEWDVVAVAHLCAGVFPTGRARSTWIGALAELPPED 712

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQ---EEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               +  S+ R  +   L    + + +   EE  RL YV +TRA   L++  H      ++
Sbjct: 713  LGPLTSSQDRAELQEMLRAEREAAKELAGEEERRLAYVAVTRAKQTLLLSGHWLAEGAER 772

Query: 676  SNQRT--------------------------WYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            +   +                           +                 L     + + 
Sbjct: 773  ALGPSAFLVEWRDALVAAGGSPDMWAESPALDHMRPASGESEGALWPPDPLLGRRAQTQR 832

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
             A        +  PL R E     + E             +         +  D  G   
Sbjct: 833  GAERVRAALADAVPLPRPEGPDAELYEAAAALVAERAAAAEARSVERAGLTVSDVVGIAV 892

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL--LLS 827
              +     +   RG             PE +       +  +            L     
Sbjct: 893  DPAGFERERA-RRG--------PRPPAPEAQAGIGFHEWVRRWYLSEELVGLDELPGAAD 943

Query: 828  ITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEY 883
                + +  +          + S V+V          +++ GRID +         + ++
Sbjct: 944  DDDAVASEKLRQKFLESPWAARSPVAVETPFELNLDGVLVRGRIDAVFAEPGGGYVVVDW 1003

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            KT                AQLS+Y    +       +   +  V+             + 
Sbjct: 1004 KTGR-------ADLRRAKAQLSVYRLAWQRLTGAAQVAGAVHEVATGVTRTFDDLYTAEE 1056

Query: 944  FAEIST 949
             A +  
Sbjct: 1057 LAALLR 1062


>gi|304406520|ref|ZP_07388176.1| UvrD/REP helicase [Paenibacillus curdlanolyticus YK9]
 gi|304344578|gb|EFM10416.1| UvrD/REP helicase [Paenibacillus curdlanolyticus YK9]
          Length = 772

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 99/620 (15%), Positives = 204/620 (32%), Gaps = 88/620 (14%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           + +    L  + +         + R  T      +  +    K +   YE+ K ++  +D
Sbjct: 182 LREAGTTLDYEPETLLALLSSYKCRLLTASDMPESSTAEREMKRVLIRYEQWKAESRAID 241

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F+D+++  + +L + +    +   + +   ++++DE QDT+ +Q+E++R +         
Sbjct: 242 FDDVLLLAHRMLSEDE---QLLATLQERFRYVMVDEFQDTNTVQYEIVRLIAG------- 291

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                R L  VGD+ Q+IYSF+GA    +L   ++             ++ L +++RS+A
Sbjct: 292 ---KQRNLMVVGDDDQTIYSFNGASADAILSFDKLYP--------DARVVTLSVNYRSSA 340

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            I+ + + +     N +  +          +S     G V       S       P    
Sbjct: 341 AIVGLGNAIIRGNRNRRPKTLTVPAPREEAASHSSADGEVAAAAASDSPLSHAAAPSAAL 400

Query: 329 WTSYFDSLPQESSA----------------SILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                +       A                   A  I  ++  ++ +            +
Sbjct: 401 AGIGAEMPAASDDASLGTIGKPMFARPATSEEEASLITASVRKLVESGQ---------YR 451

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKDLMALGRFILSQ 431
             DI VL R                    I V    + +   +   I+ +MA  R  L  
Sbjct: 452 YGDIAVLYRSAGSGRATIENL----LQAGIPVEEHGEGYSFYESSLIRPVMAHLRISLHH 507

Query: 432 EDDLSFVCMLKSPL--FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
            D  +   ML +     +     I +  ++R +   +             K   V++ + 
Sbjct: 508 RDKQAIEEMLPTLYVNRDAGMKWINEQESERAKKWPLIHLTNFPRLQQFQK-DQVLERLR 566

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            LI       P      I  A   +    +R G    +++ E L+  L      + +++ 
Sbjct: 567 -LIKAIASIRPATAIRRIRDAFFDKFAETNRGGTPHKELMKELLDE-LETSAGRFDTVEA 624

Query: 550 LISELEQYPPTIKR--------------AHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            ++  ++                     A       V++MT+H +KGLE PVVF+V    
Sbjct: 625 FLAFADEMAKRQADARDKQKQERYTASAAPETEPGSVQMMTIHKSKGLEFPVVFVVGATE 684

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +  H+   +                  ++                        LLYV +
Sbjct: 685 NIMPHRSATQPQQPKQATTPEKAAREKEEAIEEERR------------------LLYVAV 726

Query: 656 TRASDQLIICKHSNTSNEKK 675
           TRA ++L +   +    +K 
Sbjct: 727 TRARERLYVSSPAFYHGQKT 746


>gi|189346869|ref|YP_001943398.1| exodeoxyribonuclease V, beta subunit [Chlorobium limicola DSM 245]
 gi|189341016|gb|ACD90419.1| exodeoxyribonuclease V, beta subunit [Chlorobium limicola DSM 245]
          Length = 1226

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 115/1081 (10%), Positives = 273/1081 (25%), Gaps = 221/1081 (20%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ----ASQTQCIE 63
               E+     + +W      VS + +       +       + + L              
Sbjct: 215  HEAEAAFDEVRRIWSEEKEPVSALLRTGKGLSRSEKAYRADRVEQLLSDMEVFVAAGNPF 274

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              F        +   +  K+  T   +         L  + +      D        +  
Sbjct: 275  GLFDGFDKLTASGIASGTKSSGTAPSHP--------LFDTCERLQAAADERLQALKSE-- 324

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR-------------------D 164
                 +  +      E KK+  +  F+DL+ +    L+                      
Sbjct: 325  -----VVAFYRKRLPERKKERNIRFFDDLLADLYQALQGGCEIAATPGGLEASAIIEIGL 379

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             +A +   +       LIDE QDT  +Q+++ R +                LF +GD KQ
Sbjct: 380  EAAALAEALRNRYRAALIDEFQDTDPVQYDIFRRIYAGSEAP---------LFLIGDPKQ 430

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            +IYSF GA+    L+      +             L  ++RS   +L   + +F    + 
Sbjct: 431  AIYSFRGADIFAYLQAASDVGRE--------RSFTLNTNWRSVPKLLDGFNLLFDSARHP 482

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                   +  +           +     ++        +   +S         +  +A  
Sbjct: 483  FVFDNIPSPPLVAGKELPRDAESPVPPLEICLLRSGDGDGSLKS------GESERFAAGA 536

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A  +  TI+                    DI V+VR  +   ++    R       I  
Sbjct: 537  CASMVTETINGGSDAG--------------DIAVIVRTHRQARMMQTALREC----GIVS 578

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
            V      +   +  +++  L   +     +      L +PLF  +  DI ++        
Sbjct: 579  VMRSDESVFASVEAEEVRILVTALAEPGRESLVRAALVTPLFGLNGSDIARLN------- 631

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
                      N  + + Q   +Y              +        ++         G  
Sbjct: 632  -------DDENAWVERLQQFREYHRLWQECGFMVMVRELMRREAVRERLLA-LSGSSGER 683

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVH 578
             +  +        R   +    ++ L++        ++     +    ++   VRI+T H
Sbjct: 684  ALTNVLHCFELLHREAHSRGLGMEGLVTWFGERVAAKEPGEEYQIRLESDEPAVRIVTAH 743

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGL+ P+VF        F   +     ++   +D         +    +  +      
Sbjct: 744  VSKGLQYPIVFCPF----QFGGGNGSGDVVLFHDDDG------RMKRDFGSRAIERHRAL 793

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN--------------------- 677
              +    E  RL YV +TRA  + I          +                        
Sbjct: 794  ASREFLAENLRLFYVALTRAERRCIFFTARIVDARQSGRTPMLSPSSYLLYVSDEASQSP 853

Query: 678  --------------QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
                            T  + + +         +++  +  +         +     +  
Sbjct: 854  RLIGEAQQELAALDAGTMAERLQNISDESGGAIRLRRLSLDDDLTVPLIRTAAADSPSFA 913

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYI--LNPSTIDTKGKTNLE----SLLSDN 777
            L       +          L          P      P          L     S+ +  
Sbjct: 914  LREFTASLETDWRIASFTTLSRHHHMAFELPDRDESTPEQQAAAAPAVLPDTDRSIFAFP 973

Query: 778  QTFNRGLIIHKLLQVI------FTLPEHKRKNFITSYCTKNA-KLWPAKEYKNLLLSITR 830
            +    G+++H + + +          E   +        +   +         ++  + R
Sbjct: 974  KGAGAGILMHSIFETLDFANAIDDTSESHIEEASIRALDRYGYERHWQPCLTGMVQQVLR 1033

Query: 831  L-------------------------------LENPMMTTAMSCDSYS-----EVSVSGK 854
                                            + +P ++  +             +    
Sbjct: 1034 TELSSQEGNFTLGGLRQGSWSTELEFFFPLRHVTSPRLSELLMRHGVIPNGADPAAALQA 1093

Query: 855  INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT---------HIAQLS 905
            ++      ++ G +D +  ++   ++ ++K++H       +             +  Q  
Sbjct: 1094 LDFTPVKGMLMGFMDMVFEAKGRYYLLDWKSNHLGNAVEAYHRERLGKAMQENLYRLQYL 1153

Query: 906  IYEKILKDSYPNKS---------LVCLLIYVSE---------PKVFIIPQNKLNKAFAEI 947
            +Y   L      +             + +++                +P   L +   E+
Sbjct: 1154 LYTVALDRFLSLRVPGYRYDTHFGGAIYVFLRGVSVERGEEYGFYRDLPSEALIRELQEL 1213

Query: 948  S 948
             
Sbjct: 1214 L 1214


>gi|294655436|ref|XP_457572.2| DEHA2B14410p [Debaryomyces hansenii CBS767]
 gi|199429955|emb|CAG85583.2| DEHA2B14410p [Debaryomyces hansenii]
          Length = 934

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 112/740 (15%), Positives = 219/740 (29%), Gaps = 169/740 (22%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINK-YVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + NE  E + + L   P      +   + S+          K A +    +  +  ++  
Sbjct: 76  AANEMIERLGELLKDTPIKVDKILIGTFHSICYRIIKIYGKKIAISDYNIADERDSKQIL 135

Query: 67  SL----LSSFFLTQKFTP--QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                 LS   L        ++  I +   +         KK + +  K++        +
Sbjct: 136 EEMIMKLSETDLKYISELPDRQTEIFKSNKEDDKYHGWDPKKIRRQISKLKSSGIQPDAY 195

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +           L   Y++  + N +LDF+D +I  + L+    V  ++         H+
Sbjct: 196 EQRSDCNQFLGLLYKRYQKHLQANSLLDFDDCLICCHQLITTYPVLNFV--------EHV 247

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           L+DE QDT+ IQ +++     +F  G  T+      +  VGD  QSIY+F  A+     +
Sbjct: 248 LVDEFQDTNEIQLQLMY----EFAKGHPTNPRLQNNITIVGDPDQSIYAFRDAQAINFKK 303

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            K   +K   +     ++I L  ++RST+DIL   +K+    ++    +  S      R 
Sbjct: 304 MKEHYKKIYQDNS--INVITLEENYRSTSDILNFSEKIMRQQDDRLSKTLKSQMVSSFRP 361

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                                         AR I+Y I +++  
Sbjct: 362 VYSNLKSP-----------------------------------EQEARWISYQIEHLMA- 385

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                     + + KDI VLVR    T  I           +I  V        +   + 
Sbjct: 386 ------LPNSIFKYKDISVLVRSAYQTRTIENEF----VRKRIPYVMVRGTAFWNRKEVV 435

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-----------------E 462
            ++   R I S  D ++++  +  P     E  +  I  +                   +
Sbjct: 436 AILDYLRVIASDNDRIAYLRTVNFPKRGIGEKTLASISAELEMEAIKPDIYKRQVYSVLQ 495

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS--------------------PHD 502
             +      K  +   S  +  + +I ++  I +  +                       
Sbjct: 496 DISNVNTSVKLTSKNQSSLKKYLGFIADMRDILEDVNKISYEEQVGSDSTIEKRNTLLSK 555

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS---------------- 546
            F L+      +++F +   +E+   + E                               
Sbjct: 556 LFELVYVKSGLQKEFQNDPNHEL--NIMEVQTQLCEFTPKDEELPLYLGGSESDITEDKR 613

Query: 547 --LQELISELEQYPPTIKRAHSA------------NHNEVRIMTVHTAKGLESPVVFLVD 592
             L++ I  +  Y                      +  +V + T+H +KGLE P+VF+  
Sbjct: 614 NFLEKFIQSIGLYETDSTNEKEKEKEIALRFPGRIDKGKVALSTIHGSKGLEWPIVFVPG 673

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +   K                                  +    +    E  R  Y
Sbjct: 674 LSDGILPAKF--------------------------------AMDTGGEEAVNEERRCFY 701

Query: 653 VGMTRASDQLIICKHSNTSN 672
           V  TR    L +  +    +
Sbjct: 702 VATTRTKLLLYMSSYIEQGD 721


>gi|145652285|gb|ABP88202.1| hypothertical protein [Borrelia lonestari]
          Length = 631

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 91/544 (16%), Positives = 171/544 (31%), Gaps = 125/544 (22%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K K+   D  DLII    +L        I+ K++     I +DE QDT+  Q+
Sbjct: 97  IEIYEQEKSKSNAFDLADLIIKATLMLTN---CEDIKMKVNARFKAIFVDEYQDTNYAQF 153

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +R L                   VGDE QSIYSF GA  + +L  ++           
Sbjct: 154 LFLRELYSKDMH----------FMVVGDEDQSIYSFRGARIENILEFEKRFDN------- 196

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             S   L  ++RS+ +I+   + V S  +N       +   I ++               
Sbjct: 197 -VSKYYLVKNYRSSLNIVNFANDVISKNKNRYDKVIITENRIGNK--------------- 240

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           V          + E + ++                                         
Sbjct: 241 VKFFIFQNPAEEAEYFLNFLLEDN------------------------------------ 264

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            D  +L R    +               I           +   IKD+++L R  ++++D
Sbjct: 265 LDTAILYRFNYQSLQFEKAF----LKNNIPYKVLGSMRFYEREEIKDVISLLRLFVNKKD 320

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF----------ANCGISKFQH 483
            +SF+ ++  P     +  + +I    ++ +  ++ I             A   +  F  
Sbjct: 321 RVSFLRIINKPARGIGKTTVDQIIKIINDLDVNFDLILAIRKVINVLKGKARDSLVSFLS 380

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +   + E +    + +   F   ++        +     ++    +DE +N  +      
Sbjct: 381 LYDELWENLKRDFYVNLSLFIKDVVIKFGFWVHYQKFNNDDKSKNIDELINSGVEYSG-- 438

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S++ L+  LE    +      +  + + + ++H  KGLE   V +      +   +  
Sbjct: 439 --SIEGLVIFLENSSLSPLVHGDSKSSGI-LSSIHGVKGLEFDRVIISGFEKGLLPSE-- 493

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                           I+ L     EE  RL YV +TRA  +LI
Sbjct: 494 --------------------------------IEKLTSDRLEEERRLFYVAITRAKIELI 521

Query: 664 ICKH 667
           I   
Sbjct: 522 ITIS 525


>gi|170717649|ref|YP_001784727.1| exodeoxyribonuclease V subunit beta [Haemophilus somnus 2336]
 gi|168825778|gb|ACA31149.1| exodeoxyribonuclease V, beta subunit [Haemophilus somnus 2336]
          Length = 1216

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 141/968 (14%), Positives = 300/968 (30%), Gaps = 162/968 (16%)

Query: 45   TILKKAQTLQQASQTQCIEERF--------SLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
              L+  + L++    +   + +         + +     Q+    K     E++KK P +
Sbjct: 261  RWLENEKALRELVALKKWRKDWFESRFNKMRVWAENEDIQQPEAAKYFYQLELDKKEPLV 320

Query: 97   KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                     E   +     T      ++        LN    + K  +    F+DL+   
Sbjct: 321  S---HDLFSELENLVTNEVTQISNNFSVLLYHCVHELNRKIMDYKLTHQQKGFDDLLRLV 377

Query: 157  NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             + L +      +   I  +    +IDE QDT   Q+++   +         +       
Sbjct: 378  RNALYQPQ-GDKLAQLIRHQYPFAMIDEFQDTDQQQYDIFYQIY------IKSAVKNTGF 430

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
              +GD KQSIY F GA+    L+     Q R +          L  ++RST  ++  ++ 
Sbjct: 431  IMIGDPKQSIYKFRGADIFTYLKATEQAQYRFS----------LGENWRSTQPLIQTINY 480

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
            +F   EN+  L +        +       G   L       +       +   T   D  
Sbjct: 481  LFDFQENSPFLHKKIPFQQVAKGLYYDTQGN--LLPNRFCLNGRIEPALRGYLTDNND-- 536

Query: 337  PQESSASILARRIAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                  + LA   A +I   + +          + ++AK+I VLV           + + 
Sbjct: 537  ------TQLAENCALSIEQWLQSAVQNQAILDNKPLKAKNIAVLVSSFTQA---EKIQKA 587

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            L++    SV  +DR  + D +  K+L+ + R  L+  ++ + +  L + LF  +  +IF+
Sbjct: 588  LRDKGIASVYLSDRSNVFDSITAKELLHILRACLNPLNENNILNALSTALFAKTGAEIFQ 647

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            I     + E ++E   +       ++Q        ++ +       +     L   +  +
Sbjct: 648  I----KQDENLWENCVERFIAYQQQWQR-----QGILPMLHHLFAVEKINENLQMMEQGE 698

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRI 574
            + ++         L E L    R      S ++    +++ +     +    ++   V+I
Sbjct: 699  RKMTDLW-----HLSELLQQATRLNDTESSLVRWFEKQIQGEERLEEQIRLESDRELVKI 753

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            +T+H +KGL   +V++           +    +     +++    +W    +  + I   
Sbjct: 754  VTLHKSKGLAYDLVWIPFICKPSLFRDNAINTYY----DENQEQVLWDMDKQHSDEI--- 806

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQ----------------LIICKHSNTSNEKKSNQ 678
                 +K    E  RLLYV +TRA  Q                L +         K+ + 
Sbjct: 807  -----EKERMAEDIRLLYVALTRAKYQIVINLPRIFEKKWNALLYVLTKGQIGVNKRIDD 861

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE---------- 728
                  +      +   + +++     K      E+ T     +P+E EE          
Sbjct: 862  EYDAKKLLSPIIEELGEQCVEIEED-KKLLVRRNEYITVQQALSPVEAEEFHGKIERNWT 920

Query: 729  --TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK------------------- 767
              +  ++    +  + L S  K    E   +     D   +                   
Sbjct: 921  VTSFTEMTYRHQRNRSLNSRQKAQQIEISGVFDQARDHDVRENGHDMSASFDIKLSADSD 980

Query: 768  -TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                 S        + G   H+  +    + +    + ++  C         +    L  
Sbjct: 981  YPVGFSPFDFPHGVHVGSEFHRYFEKY-NMTQALNDDQLSKLC--QTLQLSDEWQNPLKK 1037

Query: 827  SITRLLENPMMTTAMS--------CDSYSEVSV------------------------SGK 854
             I  +   P+               D   E+                          S  
Sbjct: 1038 WINAIFNTPLKQDIAGFTLGNIKPQDCLKEMQFYLKLNQSFNENVFNRLLSKYHHLPSSP 1097

Query: 855  INCPKKDIIISGRIDQISISQQNIFIFEYKTH-------HHVPQEIEHIP--YTHIAQLS 905
            I   +   ++ G ID +   +   ++ +YK++       H+    +  +     +  Q  
Sbjct: 1098 ILMDRIKGMVRGFIDLVVRFEGKYYLLDYKSNLLGYSSQHYQQDNLIQVMCNNHYDWQYL 1157

Query: 906  IYEKILKD 913
            IY   L  
Sbjct: 1158 IYTIALHR 1165


>gi|237739799|ref|ZP_04570280.1| DNA helicase II [Fusobacterium sp. 2_1_31]
 gi|229423407|gb|EEO38454.1| DNA helicase II [Fusobacterium sp. 2_1_31]
          Length = 929

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 133/908 (14%), Positives = 280/908 (30%), Gaps = 168/908 (18%)

Query: 52  TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
            L++  + +  ++ F  LS+     +    ++   +                 ++   + 
Sbjct: 133 RLKEYKKLEDYQKFFDNLSNNTGKYQGDWARSSFLK-----------------NKINDLN 175

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +     +  +++   +   K     Y +   +  ++DF  L +   ++L K         
Sbjct: 176 ENAIDIENIQTSDVYINFIKEAYKLYVKQLYEANIVDFSYLQVEFFNMLVKN---KEFLE 232

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           KI+ +  +I++DE QD++ IQ +++  +++          + + +  VGDE QSIY F G
Sbjct: 233 KINHDFEYIMVDEYQDSNKIQEKILLLISK----------TRKNICVVGDEDQSIYRFRG 282

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L   +   +       +  II L  ++RS  DI+   +K  S  +         
Sbjct: 283 ASSENILNFPKHFDED------ECKIIILEENYRSVTDIVEFNNKWISSID--------- 327

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                              W+      +       +        +  ++    +   + +
Sbjct: 328 -------------------WQGNRFDKNIVSMRDTDILGKNVFHISGKTMDENIKNTVIF 368

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I  +   + I             I VL    K+                I V      +
Sbjct: 369 -IKKLKQHNKIT--------NYNQIAVLFANFKNNS--AKKLEVALKKENIEVYSPRTKV 417

Query: 412 LTDHLAIKDLMALGRFI---LSQEDDLSFVCMLKSPLFNFSE-DDIFKICTQRHETETVY 467
             +   IK  + +          ED +                 D   +   + + E + 
Sbjct: 418 FFEMYEIKLTLGIILACFKKYFPEDSIDQYLTECIDFARLEIKKDSEFLAWIKEKIENIS 477

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA-KKGRQQFISRFGNEVI 526
           E      N    +F +   Y + L       S  +    IL    K  Q+++        
Sbjct: 478 EESFDSLNEIFYEFLNFTYYKNVLNEETPVDSRANHNLAILSKIFKNFQKYVHYRKITAE 537

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           D      +            L+      E     I       +  +  +T+H +KGLE P
Sbjct: 538 DD----FSVVKYFFTGYLDILK------ESRVDEIFSEEDYPNECIPFLTIHQSKGLEFP 587

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VV +    S+                 DD             ++             + +
Sbjct: 588 VVIVFSLNSKPN------------RYEDDDISRQTSIDRLINSS----SKLSENDKEKFD 631

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           + R  YV  +RA + L++  +    +E   N + ++  +         + ++ L     K
Sbjct: 632 FYRKFYVAFSRAKNLLVLSSYEMGISE---NFKPFFYSIRGVNSLQFDINEVNLDEVTKK 688

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           DE     ++T                      I      P+K  +      +        
Sbjct: 689 DERKILSYTT---------------------DIAPYRHCPMKYYLVREKEYS-------- 719

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVI---------FTLPEHKRKNFITSYCTKNAKLWP 817
                      + FN G+I HK ++ I             +   +N + +          
Sbjct: 720 -------TFSKKIFNLGIITHKAIEHINKLFLQKKNPLFDDEYIENLLKNIYKFQNIDLD 772

Query: 818 AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN 877
              ++ ++  + + +E+             E S   +I     D I+ G+ID I   +  
Sbjct: 773 DN-FERIMSIVKKYIEDE--KDNFEYIKKVEAS-EFRIE---DDYILYGQIDLILEDENE 825

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE---PKVFI 934
           I I ++KT  +           +  QLS+Y+ +L+  Y +K +   L Y+ E    K  +
Sbjct: 826 IQIIDFKTGKY---NELEYSSNYRQQLSLYKLLLQKKY-DKDIKTYLYYLEEDEPKKEIL 881

Query: 935 IPQNKLNK 942
           I   +L +
Sbjct: 882 ITDEELEE 889


>gi|197116744|ref|YP_002137171.1| exodeoxyribonuclease V subunit beta [Geobacter bemidjiensis Bem]
 gi|197086104|gb|ACH37375.1| exodeoxyribonuclease V, beta subunit [Geobacter bemidjiensis Bem]
          Length = 1130

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 122/932 (13%), Positives = 270/932 (28%), Gaps = 159/932 (17%)

Query: 78   FTPQKNIITQEINKKSPD-LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN-- 134
              P++ I      K SP+ L + +++   +              +       L +     
Sbjct: 162  GQPEERIAAAGAAKVSPESLLKLVQRVCGDPNAAVIPDPPADANELDDWLQGLKRGFFDY 221

Query: 135  --AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              A   + K+   +  F+DL+++ +  L +   ++ +   I +     LIDE QDT  +Q
Sbjct: 222  LRAELPKRKRLKNLRSFDDLLLDLHAALLRP--ASTLPRLIRERYQAALIDEFQDTDPLQ 279

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + +  ++                 F +GD KQ+IYSF GA+    +   +  ++R T   
Sbjct: 280  FAIFDAIY--------PVGHEAPFFLIGDPKQAIYSFRGADIFAYMGAAQATKERHT--- 328

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                   L  +FRS A ++  V+ +F+  E      +     +        +        
Sbjct: 329  -------LLQNFRSEAGLIDAVNALFASRELPFLYPQIGFNKVEAAPKEKSR-------L 374

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF--------- 363
                Q  +               + +  +   L   +A  IS ++               
Sbjct: 375  VEAGQRKAPLKLWLAPRKDAGKPINKGDAWEQLPETVAAEISRLLRDGADGKLTVEELRK 434

Query: 364  ------SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                   N  +R ++ +DI VLVR  +   L+            I  V      L +   
Sbjct: 435  DAEEGSENWVQRAVEPRDIAVLVRANRQAKLMQRAL----THRGIPSVLCSAGNLFESDE 490

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
              +L+ L   +     +      L + L   S  ++ ++                     
Sbjct: 491  AAELLRLLSAVAQPGHESLLRGALATDLVGVSGTELARLMDDEK---------------- 534

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFT 536
               ++ +++            S        +  ++ R++ ++   G   +  L   +   
Sbjct: 535  --GWEEILEEFRSYHDTWNSGSCMSMALQFMEKREVRKRLLAEPMGERRLTNLLHAIETI 592

Query: 537  LRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             + + N    ++ +IS L      E      +     +   V+++T+H +KGLE P+VFL
Sbjct: 593  HQAQVNERLGMEAVISWLACRITEEPKKDEYEIRLETDEAAVQLVTIHKSKGLEYPIVFL 652

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                   ++    K    +    D   +          +  + +      +    E  RL
Sbjct: 653  PFC----WAEYAGKDEGALFHDEDGRVVLDI------GSEQMGEHKAQAAREALAESLRL 702

Query: 651  LYVGMTRASDQLIICK---------------HSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
            LYV +TR   +  +                 H   +  K     +  D+           
Sbjct: 703  LYVALTRGKHRTYLTWGVFKDAGDSALHYLLHPGETPVKGQVTLSDADIRKRLDTLAASS 762

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                    +   +   Y        +                     L S   +    P 
Sbjct: 763  AGRIEVLDLPAADLAPYRAHDKKAPDLAPLPFTGAISRDWRVASFTSLSSHKHHTAELPD 822

Query: 756  ILNPSTIDTKGKTNLESL--LSDNQTFNRGLIIHKLLQVIFTLPE-HKRKNFITSYCTKN 812
                S ++ +   ++E     +  +    G+ +HK+ + +       +    +     K+
Sbjct: 823  RDEGSPVEERPVHDVEPTGIFAFPKGAKAGIFLHKIFEDLDFTRVGEQLSPLVKEQLDKH 882

Query: 813  AKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKKDII--- 863
                   +   +   +  +L+ P+      +         +E+     ++    D +   
Sbjct: 883  GFAPDWSQ--AVRDMVQNVLQAPLGDGEIALAQVGLERRLTEMEFFFPLSHVTSDRLREA 940

Query: 864  -----------------------------------ISGRIDQISISQQNIFIFEYKTHHH 888
                                               + G ID +       +I ++K++H 
Sbjct: 941  AARFTAGHGTAGVAGLPVDLADLFSRLSFAPVQGMLLGFIDLVFEHGGRYYIVDWKSNHL 1000

Query: 889  --VPQEIEHIPYT-------HIAQLSIYEKIL 911
               P                +  Q  +Y   L
Sbjct: 1001 GNTPGNYGQAALKKEMEENFYPLQYLLYTVAL 1032


>gi|218767904|ref|YP_002342416.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
            Z2491]
 gi|121051912|emb|CAM08218.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis
            Z2491]
 gi|319410151|emb|CBY90487.1| exodeoxyribonuclease V beta chain [Neisseria meningitidis WUE 2594]
          Length = 1204

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 130/942 (13%), Positives = 270/942 (28%), Gaps = 168/942 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L +YLN    E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIEYLNRSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHADTLARAVAENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +   ++R              S+   +   
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAE------------SRLSPERPA 515

Query: 325  QQESWTSYFDSL--PQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVR 381
             Q  W    D+    ++      A   A  I+  +        N K   +Q+ DI VLVR
Sbjct: 516  VQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAARGRLNFKGCPLQSGDIAVLVR 575

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +++   +      ++  V   R  +        L AL  F L      +   +L
Sbjct: 576  THNEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVL 631

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +F ++   +        E     E                   +             
Sbjct: 632  TSSIFGYNAQQLHDFNQNESEILHWAE--------------SARTALDNW----NQYGIF 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPP 559
                          + +SR     +    + L        +  + ++L + + +      
Sbjct: 674  AAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAG 733

Query: 560  TIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        ++ + V+I+T+H +KGL+ P+V+         +     ++    +   
Sbjct: 734  NNSGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRT 793

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +               +  D  K        E  RLLYV +TRA +QL I    ++    
Sbjct: 794  ELLAKAQ---------LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTAD 844

Query: 675  KSNQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                     +            +   D      +    +  +     +++       P  
Sbjct: 845  NPLAYLIEGLPQDSRETVRQTYAQEKDGITMLKQNWRRVADNAPAGTDFAFTENAPPPAA 904

Query: 726  REETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILN 758
                  Q  +                                ++   P  +         
Sbjct: 905  YRSNAGQTAEFAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVAAM 964

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP 817
            PS  +T   ++  S+    +    GL +H++L+          ++  I     K    + 
Sbjct: 965  PS--ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYG--FE 1020

Query: 818  AKEYKNLLLSITRLLENP-------------------------------MMTTAMSCDS- 845
                  +        + P                                +    + D  
Sbjct: 1021 EMWLPAVAEMAEACQKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDI 1080

Query: 846  -YSEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------E 892
               EV  + +  ++    +  ++G ID +    +  I + +YK++H             +
Sbjct: 1081 RLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPEGNICVIDYKSNHLGADASAYTRQAMD 1140

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
                 + +  Q  IY       +  +     ++    +++  
Sbjct: 1141 EAVAHHHYYLQALIYAVASARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|257075423|ref|ZP_05569784.1| UvrD/REP helicase [Ferroplasma acidarmanus fer1]
          Length = 924

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 114/848 (13%), Positives = 231/848 (27%), Gaps = 155/848 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
               A Y ++ K++   DF  ++ N    LK       +   I   + HI++DE QD   
Sbjct: 175 AKCFADYMDSLKEDRYFDFATILYNLVYELKNNPEKINL---ITHRVRHIIVDEFQDVDK 231

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++  L+              ++  VGD+ Q IY + G +   ++            
Sbjct: 232 LQNTLLELLS----------PVTESICVVGDDDQGIYHWRGTDVGLIMNFSN------PE 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
              K + + L  +FRST  ++ +  +      +                           
Sbjct: 276 NSAKCTDVALNTNFRSTRAVVELSRQFIENNGSRLPKGM--------------------- 314

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                    ++    +  +        +  +       I   I  ++GTD +  N K   
Sbjct: 315 ---------TENPGLKRKYEEGDIQSCEFENEKDELDFIVSKIGELVGTDFLDRNNKPFS 365

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +   D  VL R  K    I        +   I  V      + +   +         I  
Sbjct: 366 LSLSDFAVLTRTNKWAKKIIDRL----DREGIPSVAYSGESIFERPEV---EFALHSIA- 417

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI-- 488
                  +   K         ++  + ++    +          +  I+  +   + I  
Sbjct: 418 -YTFECKIRYGKGNYRVPDLSELSGMYSRIFTIDHFPRADTGIFSRNIAALRKEAEDILS 476

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE----QNSY 544
                         F+  IL A    +     FG +    L          E    +   
Sbjct: 477 KGTKDYLGDLGLQGFYHRILQAMGADR---FDFGEKYNYNLACLSRAISDYESVWIRLRA 533

Query: 545 SSLQELISEL----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           S ++   + +    +      +    +  N V+I+T+H AKGLE PVVF+ D    +  +
Sbjct: 534 SEVKWFFTFMGVYGKSEYTDPQHQDPSIINAVKILTIHKAKGLEFPVVFVPDF---IKPN 590

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                 + + ++  D                           T E+  R+ Y   TR+  
Sbjct: 591 HRTPDRNFVDNVLYD---------------------SERYTGTDEDERRVYYTAFTRSEK 629

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            L +          +  +                         + +              
Sbjct: 630 YLFMTWSRFPEGGVRPRK------------------HHPFLEELPEKYISGPMQLKKSRS 671

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             P  R  T +      ++   L  P                D   +            F
Sbjct: 672 GYPDRRTATGEYSTSYSELTSYLRCP---------------NDFLLRNVYGYNAGVPAGF 716

Query: 781 NRGLIIHKLL----------QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
             G  IH +L          + +  +           +  + A    +   K     + R
Sbjct: 717 GYGTNIHNVLNMIHRDYIRNEKVPDMD-EVVAMVDRMFHLRYATDAMSDNMKKAAERVVR 775

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFEYKT 885
                      S    +E      +     + +I+G+ID +  +      + + I ++KT
Sbjct: 776 SYVAEHSKD-FSRILETEKRFEFVL----GEALIAGQIDLLKKTNPDGSLKEVEIIDFKT 830

Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV--FIIPQNKLNKA 943
                         +  QL  Y      S   K    ++ ++ +  +    I   +L K 
Sbjct: 831 EKIDGVYSAD----YDRQLRYYALACLKSLNLKPQKAIVHHLDDDSITQVDISDVELTKT 886

Query: 944 FAEISTKI 951
            AE+   +
Sbjct: 887 VAEVGKTV 894


>gi|240047396|ref|YP_002960784.1| ATP-dependent helicase PcrA [Mycoplasma conjunctivae HRC/581]
 gi|239984968|emb|CAT04961.1| ATP-dependent helicase PcrA [Mycoplasma conjunctivae]
          Length = 737

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 104/559 (18%), Positives = 186/559 (33%), Gaps = 124/559 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +   +  V+DF+DL I    L +       I  K  Q++ ++L+DE QDTS I
Sbjct: 173 EIYKLYLQETAELGVVDFDDLQIYVKILFENN---QEIAKKWQQKMKYVLVDEFQDTSSI 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++++   +              L  VGD  Q+IYS+ GAEP  +L  ++   +     
Sbjct: 230 QYDILKFFIK----------KETKLVVVGDPDQTIYSWRGAEPGLILNLEQDFPE----- 274

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + L L++RS   IL   +++ +  +N    +  S     H+  +          
Sbjct: 275 ---LKTVVLDLNYRSNQSILDAANQLIANNKNRIEKNLHS-----HKEWKDEL------- 319

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        + + +          SSA   A  +   I  +   +           
Sbjct: 320 -------------EVKFYH--------GSSAQDEADWVINQIWEIANKEKS--------- 349

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + ++I +L R       I            I      R  L DH  I+++M   + I S 
Sbjct: 350 KFREIAILYRNHSYIRTIEDAL----VKKGIPHGTIGRKTLQDHKEIREIMHFWKVIES- 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEY---------------IQKFAN 475
            D+ SF  ++  P        + K+    +     ++++                   +N
Sbjct: 405 GDNFSFQQIINVPPKKIGISTLTKLNDLAKSYNYNLHDFLLFYYSGNIKLKIGDKIPLSN 464

Query: 476 CGISKFQHVIKYIHELIHIA--------QFCSPHDFFTLI-LGAKKGRQQFISRFGNEVI 526
               K   +   I+                         + L      +Q         I
Sbjct: 465 ENQKKISTLFSNINWAKGKKLEIENKNNPKIKQFSLIMKLFLKGIGYLEQVRDTKEKNDI 524

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           + L E     L   Q    S + L   ++      +    AN N V++MT+H++KGLE  
Sbjct: 525 EKLLEAYYIQLDEWQKHNPS-KNLRDYIDDISLDSQLDFHAN-NSVKLMTIHSSKGLEFD 582

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+V     +F    I +                               K+  +   EE
Sbjct: 583 NVFVVGMVQGIFPSIQILRS-----------------------------KKNTFQEEYEE 613

Query: 647 YNRLLYVGMTRASDQLIIC 665
             RL +V +TRA ++L I 
Sbjct: 614 ERRLAFVAITRARNKLFIS 632


>gi|260948414|ref|XP_002618504.1| hypothetical protein CLUG_01963 [Clavispora lusitaniae ATCC 42720]
 gi|238848376|gb|EEQ37840.1| hypothetical protein CLUG_01963 [Clavispora lusitaniae ATCC 42720]
          Length = 924

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 106/710 (14%), Positives = 203/710 (28%), Gaps = 186/710 (26%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
            + +                VS++ E     ++ +A      S     E           
Sbjct: 175 RLVRRFGAKIGLPR------VSVADEKDAVQLVAQALEKVDVSAYPDDE----------- 217

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T  F  +  I ++++ +    LK                 ++ +M +S          ++
Sbjct: 218 TAPFKARSGIDSKKVRRHLSRLKA----------------SSAEMSRSPADGKRFISRVS 261

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           + Y+E    + ++DF+D +I    LL+   +   +         H L+DE QD S +Q E
Sbjct: 262 SLYQELLTASHLIDFDDCLILALRLLRDHHILPHV--------EHTLVDEFQDCSAVQLE 313

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++ + ++            R++  VGD  QSIY+F  A+       +R  ++     G  
Sbjct: 314 LMYAFSQ-----------GRSVTVVGDPDQSIYAFRAAQSGTFGDMRRHYEEL----GCT 358

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
           + ++ L  ++RSTA IL + ++V       +  +  +  T                    
Sbjct: 359 YQVVRLTENYRSTAAILALSERVMRQQMGREEKTLRAQHTASILPGYACL---------- 408

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                     SA+  AR IA+ IS++         G+  +    
Sbjct: 409 -------------------------DSAAQEARWIAHHISHL---------GQYEIFDRA 434

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  VLVR    T  I           KI           +   +  ++   R + S  D 
Sbjct: 435 DFAVLVRTAYQTRAIETEF----ARAKIPYTIVKGRAFWERRDVVAVVDYLRAVASDYDR 490

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVY----------EYIQKFANCGISKFQHV 484
           L+    L  P   F    + ++     + +                        ++    
Sbjct: 491 LALFRALNVPRRGFGPKSVAELVQLHEKHKCSAFETLKQVASGAIQSSLGQKAQAQLTGF 550

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN----- 539
           + ++ +       C   +           +         +    + E  +   +      
Sbjct: 551 VNFVEKARSCLSECYEANDLGRFFNYVYVQSGLEKELEPDSEGNISEVRSQLAQFVSEDE 610

Query: 540 -----------------------------------EQNSYSSLQELISELEQYPPTIKRA 564
                                              E N     + L   LE        +
Sbjct: 611 EVSGQMGEIETEKEELRIRVDTGDKNISISKIKKAESNLDVGREHLRQFLESLSLFDTDS 670

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              +  +V I T+H AKGLE PVVF+      +                           
Sbjct: 671 SQESSQKVSISTIHGAKGLEWPVVFVPGLSEGLLPASF---------------------- 708

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                      +   K  T  E  R  YV  +RA   L +  ++  S+ +
Sbjct: 709 ----------AVDDSKPETINEERRCFYVAASRAKVLLFLSAYTEDSDGQ 748


>gi|169824301|ref|YP_001691912.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328]
 gi|167831106|dbj|BAG08022.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328]
          Length = 967

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 128/849 (15%), Positives = 278/849 (32%), Gaps = 147/849 (17%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           + +   +  +++    ++ +         +          +   +N  Y   K +   LD
Sbjct: 240 LGESKKENVQEIIDEINKKVDAILSNKEKQYVDLYEGFFDILIDINREYSIKKNEKSFLD 299

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F D+ +     L+       I     Q+  + +IDE QDTS +Q ++   L  D      
Sbjct: 300 FNDIEMMCKKALEN----GNILKSCKQKYKYFMIDEYQDTSNLQRDIFYMLCSDNETLD- 354

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                  LF VGD KQ+IYSF GA  K   + +   +K           I    + R+  
Sbjct: 355 ----RNNLFVVGDPKQAIYSFRGANIKVFEKTREDIKK------SGGKDITFHENHRTHP 404

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
           +I+  ++ ++S     +  S  +   +                             + E 
Sbjct: 405 NIMEPINYIYSNKMKDRYDSLIAVNEV------------------------GDVIGRDEF 440

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
             +  D+  ++ S  +L   I                        KD  +L R + D   
Sbjct: 441 KLNNKDAKTKDDSTDVLVSYI-------------------NKDNFKDTAILARTKNDFSE 481

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                    N+  I     D+  L +   I +L+   ++     D++S V +L S +++ 
Sbjct: 482 YEKSL----NNRNIPYYIFDKQGLEECREILNLIQFIKYAR-YGDEISKVGIL-SNVYDV 535

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
             ++I              E  Q        + +   + + +        + +D  +  +
Sbjct: 536 DYNEILNQT----------ENYQSTMKKIDEEVEDFTENLTKY-------TIYDSISNYI 578

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP-PTIKRAHSA 567
                 + F      +    + +FL    + + N+Y S+++ +   E             
Sbjct: 579 EKIDYFRLF---DNLQAKANVIKFLEIAKQFDSNNY-SVEDFVEYFENNSNLYQMSYEDE 634

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           + + V++MT+H +KGL    V + +      +      +  + + N      +  P SK 
Sbjct: 635 HSDLVKLMTIHKSKGLGFEKVIVDNLSKPSNNKDKF--LLFIDNENIQMQFVLDFPFSKF 692

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
           R   +S + K +++    E + + Y   TRA  +L       +           +  +  
Sbjct: 693 R---MSKVKKLIEEEEDYEVDNVYYTAFTRAKKELSFSNSKKSG---------HFKQISP 740

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
              + ++   IK  +                           I  L++ ++I  K   P 
Sbjct: 741 YIEDLQQRGSIKFLDM------------------------RDIPFLLETKEINFKRTEPK 776

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQ--TFNRGLIIHKLLQVIFTLPEHKRKNFI 805
           K +I +   +  ++I    +   E  L          G ++H     +           +
Sbjct: 777 KVEIEKFIPIGITSILNSDEEIFEGNLQKTTINYILLGNLVHMY-AKLSDGSNIPHITEV 835

Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
             +   + K      +     +  + +++       S             N   ++++IS
Sbjct: 836 D-FLNNDEKKI----FDVATENFNKFIKD------FSD-----YKNEMDFNLLYENLMIS 879

Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
           G +D++      I +++YK      Q  E++   +  QL  Y  +L   Y NK++  +L+
Sbjct: 880 GFMDRVEFDDSEIKVYDYK---ISSQSQEYLYEKYHMQLKFYSYVLNKKY-NKNIKMILV 935

Query: 926 YVSEPKVFI 934
            + +  V  
Sbjct: 936 NLRKGYVIE 944


>gi|224437387|ref|ZP_03658358.1| putative recombination protein RecB [Helicobacter cinaedi CCUG
           18818]
 gi|313143850|ref|ZP_07806043.1| helicase [Helicobacter cinaedi CCUG 18818]
 gi|313128881|gb|EFR46498.1| helicase [Helicobacter cinaedi CCUG 18818]
          Length = 991

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 122/852 (14%), Positives = 270/852 (31%), Gaps = 143/852 (16%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           ++  ++    +   +   K  +  L  L          +   K   VLDFE + +   +L
Sbjct: 265 MESVRERIYGLFVMYYHQKQRQILLRILHYLTRFKNAQQRVLKSKNVLDFESVSMKNYEL 324

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L +     +  +++D++I HIL+DE QDTS +Q++++R + ++   G       R++F V
Sbjct: 325 LTQNIDREFFYFRLDEKITHILLDEFQDTSCMQYQILRPIIDEIQSGNG-RIGDRSVFIV 383

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GDEKQSIY F G+                  A +  +   L  ++RS+  ++   +  FS
Sbjct: 384 GDEKQSIYMFRGS-----------FSGVFEEATKALTQENLEYNYRSSKRVIDFNNATFS 432

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                +     +      + S+  ++G V+++  V  +                     +
Sbjct: 433 R--CFENYINQAYPHTLRQESKEQEIGFVRVFAPVGEEEK-----------------EAQ 473

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
              ++L  ++   +  ++G                DI +LV K  D   +    +     
Sbjct: 474 KVDNVLVSQVVDELGALLGQGADED----------DIAILVFKNNDILTLKESIQAQMPH 523

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFIL----SQEDDLSFVCMLKSPLFNFSEDDIFK 455
             I  V      L +   +K L+   + I+      + +                +    
Sbjct: 524 LNI--VTETNSRLFEKKEVKILLYALKCIVVDSKLHKQEQWENRQENDERARLYRELKL- 580

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
              ++   + + E               V+  +  L H+    SP      ++      Q
Sbjct: 581 --YEKSILKLLGESYFGDCVGESGSSHLVLHKLKSL-HLDIDISPSQVILALIEELDLAQ 637

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               R           FL  +           + +   L++ P  +  A + ++  V+IM
Sbjct: 638 SVSWR-----------FLELSCEY--------RSIEEFLQEIPSLLCNAPTQSNQGVKIM 678

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE   V L D   +  +        I         +   +P  +  +   +  
Sbjct: 679 TIHKSKGLEFKYVILCDRLGRENNSSDR--FIIEYHGASMSQLYYKMPHREVFDIAYNGA 736

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           ++       +E + +LYV  TRA   L + + S                           
Sbjct: 737 LQSYNVYANQEKHNVLYVAFTRAKCGLSVMQKSK-------------------------- 770

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                     K E +  E S    +   L  +     + + Q +      P   + ++  
Sbjct: 771 ---------GKFEILGLENSRQFDDIPKLVSKSKSHNMQNMQSLL--YTMPKLGEQDDFV 819

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ-VIFTLPEHKRKNFITSYCTKNAK 814
            +  S       +              G  +H + +  +      K    I     +   
Sbjct: 820 RVEQSESKGIFDSQSWRN------IIFGNALHSVFELHLGYKMSVKDIQSI--LFNRYGF 871

Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRIDQISI 873
               +  ++ +      +++      +    +  EV      +   ++ +   R+D +  
Sbjct: 872 ALTLENIQDCMQKAMSCMQSVEFKNLLGSKMARCEV------SYKAENRL--YRMDTLLY 923

Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS------LVCLLIYV 927
            ++   + +YK+              H  Q+  Y + L+    +K       +   ++Y 
Sbjct: 924 DKKEWIVLDYKSATSDEDS-------HKQQVREYMEFLRRYGKDKESKEHKQIRGFIVYP 976

Query: 928 ---SEPKVFIIP 936
                 ++  + 
Sbjct: 977 LRKQGEQLCEVS 988


>gi|302392152|ref|YP_003827972.1| UvrD/REP helicase [Acetohalobium arabaticum DSM 5501]
 gi|302204229|gb|ADL12907.1| UvrD/REP helicase [Acetohalobium arabaticum DSM 5501]
          Length = 1033

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 142/933 (15%), Positives = 301/933 (32%), Gaps = 106/933 (11%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            E  E   +++  L       ++   S++   G        +   +               
Sbjct: 187  EREERPKREVGNLVAEFEQAVDILKSIAQAKGKEFSQAYFKKDFRRYLELEGLTNKEEYI 246

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK-IRDRFNTYKMFKSTLASLTL 129
            +    Q    +     +   KK   LKE+L+ + DEF + + +     +M          
Sbjct: 247  TKNYKQFIKNKFWNGNKTRGKKVKALKEELEAAYDEFRRKLANYIYNQEMIPYEEEVFNF 306

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTN--------DLLKKRDVSAWIRYKIDQEINHIL 181
            ++ +   Y+  K K  +    D+   T         +LL+ + VS +    +  E++ +L
Sbjct: 307  SQRIFEIYDRLKFKEKIFTHADVSNYTYYYFYRDELNLLEGQSVSDYFFELLGSEVSSLL 366

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDTS++QW +++ L  +            T+ AVGDEKQSIY + G E +     +
Sbjct: 367  IDEFQDTSILQWSILQPLLAECE----------TIVAVGDEKQSIYGWRGGEKELFANLE 416

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
             I    +           L  S+RS  +I+  V++ F+               + H   +
Sbjct: 417  EILGGDSE---------SLGTSYRSEREIIEFVNRFFTGI-----YENWDYDGVEHLPEK 462

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             G  G V++      +     + +              +    +   +   I+  I    
Sbjct: 463  DG--GYVEVLYG-DERAKINTDTKAFGKLGEDHQEKLHNLNQRVTEDLKAEIAQRIKE-- 517

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                   ++    ++ +L R   +   I        +   I  +      L DH A+K L
Sbjct: 518  -------KLPNYNNVGILARSNNELAEIAAQL----DKEGIPYILESNDSLVDHRAVKPL 566

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
              L  ++    D    +  L+S L   ++  +  +   +   E              +  
Sbjct: 567  YFLLNYLA-YSDYFELIKFLRSELVGINDGALKYLLQNKARVEEYMA--NGEIELEAAAL 623

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              ++  I +L  +          + ++      + +    G   +  +  F +   + E 
Sbjct: 624  SEILTTIRDLKKLDFNL----LTSYLVEELGLLELYQDNAG--ALKNIYYFFSKMKKFE- 676

Query: 542  NSYSSLQELISELEQ--YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                SL + ++ LE+      +K+      + V++MT+H +KGL     F     S   S
Sbjct: 677  ----SLPKFMAYLEENKDREELKQVGVKQADAVQLMTIHKSKGLSFETEFFYWKPSANQS 732

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE----EYNRLLYVGM 655
            ++       +        I  ++  +   + +   L     K  +E    E    +YV M
Sbjct: 733  NRGNSLELYLDFDERFENIEDYMLTNSKYSQLFEYLNLDFHKQEEEKAFVEEINNVYVAM 792

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TR    L +          ++       +    +   +     +      K   +     
Sbjct: 793  TRPVRNLFLYI--------EAPCSYKRLLDKQEWAGKDYGIYEEAILGGAKAASLKDLAE 844

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                    +   E     ++   + K   +   ++            +     +L+  + 
Sbjct: 845  RKSFGKLVVSESEEEGSQVELPDLQKYFQAEEISENRL--------AEINDDKDLQMNIQ 896

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
                 N GL IH  L+ I      KR+   +    K   L   +  +   + +  LL+  
Sbjct: 897  KEIKRNEGLAIHYYLEHIKYDTPQKREYARSMVLAKYGNLLGPERIEEAFVKVEDLLD-- 954

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ--NIFIFEYKTHHHVPQEI 893
                  S     +V    ++    K      RID++ +  +   + I +YK+     +E 
Sbjct: 955  RHQDYFSD--RWDVYTEYELVSGDK----QYRIDRLIVDDEQQEVVIIDYKSGKTQEEE- 1007

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNK-SLVCLLI 925
                     QL  Y +I++    ++  +    +
Sbjct: 1008 ---------QLDRYAEIVEARLEDEYEIRTEFL 1031


>gi|212703125|ref|ZP_03311253.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098]
 gi|212673391|gb|EEB33874.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098]
          Length = 963

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 112/847 (13%), Positives = 251/847 (29%), Gaps = 137/847 (16%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +  +   +       +       A Y    +K  +LDF  + +    LLK       + 
Sbjct: 164 EEVLSADALQADPDEVIQALGKWYALYLSLLEKENLLDFSVIQLEALKLLKNNP---RVL 220

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             + ++I ++++DE QDT+ IQ  ++ +L +D           + +  VGD+ Q +Y F 
Sbjct: 221 TSLREKIRYVMVDEYQDTNTIQERLLFTLLDD----------KQNICVVGDDDQGLYRFR 270

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + +L   R   K       + ++  L +++RS   I+T  +   S   +       
Sbjct: 271 GATIRNILEFPRRFPK------GRCAVYTLTVNYRSDPGIITFYNDWMSGSVDGFS---- 320

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                       G  GTV    + +S  +      + S  +    L   +S       + 
Sbjct: 321 ----------WQGDGGTVFRHPKRISPPEG-----KISLKTPVLRLSGSASTENWHEEVL 365

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +  M          ++ +     +  L R  +              ++ I +      
Sbjct: 366 EFLKKM---------KERHLTDWNQVAFLFRSVR--WDKAKALASYLEEHGIPIYAPRSD 414

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVC-----MLKSPLFNFSEDDIFKICTQRHETET 465
           +  +   ++ ++    F+     D+          L    F  +   +F    ++ + + 
Sbjct: 415 LYFEREEVRLMIGALLFLFPVFRDIREQWQKNFGALAIWDFYDTCLLLFAEKLRQPDNKE 474

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
           + ++  +            ++  +  +        +      L      +   S      
Sbjct: 475 LKDWCVRLVREVQG-----MRIRNTPLDWGFSSLFYQLIQFPL-FSDYLELGTSSRDERP 528

Query: 526 IDVLDEFLNFTLRN--------------EQNSYSSLQELISELEQYPPTIKRA--HSANH 569
              L  F    ++               E+N        +  +     T       S   
Sbjct: 529 ARNLAIFSQLIVKFEYLHHIQVLHPAYLEKNIGDFFNHYLRYIVDGGITEFEDPGDSTPQ 588

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             V  MT+H AKGLE P+  +    +            +     + P             
Sbjct: 589 GAVSFMTIHQAKGLEFPITVVGSLHAVPRKQHTDLDELLEARHYERP------------- 635

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                  + L++  + ++ RL Y   +RA + LI+      +   K    +     + +F
Sbjct: 636 -----AFEPLERIKEFDFKRLYYTAFSRAKNLLILSCQEELTARGKFKIPSHP---FHAF 687

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
           + +    +    + +  D         H+   + +   E   +     K           
Sbjct: 688 YANLPSWREADFSKLKVDTVRPGGIKGHYSYTSHILIYEGCPRQYQFFKYWD-------- 739

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-----TLPEHKRKNF 804
                   +P                       G ++H+ ++ I         E   ++ 
Sbjct: 740 -------FSPV---------------REGPMLFGQLVHQTIEDIHKAVLREQSETVTEDN 777

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE--VSVSGKINCPKKDI 862
           I  +   N      KE   L   I  +    ++          +        ++  + + 
Sbjct: 778 IRLWFDVNYANLSQKERVYLAPQIREVALGHVLRYVERKQGRWDDIRGTEVDVSLIRDEY 837

Query: 863 IISGRIDQISISQQNIFIFEYK-THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
           I++G+ID I      + I ++K T         H+   +  QL IY  +++       + 
Sbjct: 838 ILTGKIDLIQGKGNTVEIVDFKATPKPNQYAERHLLERYRRQLEIYAYLVEQRQ-GLEVS 896

Query: 922 CL-LIYV 927
            + L Y 
Sbjct: 897 AMNLYYT 903


>gi|299136332|ref|ZP_07029516.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
 gi|298602456|gb|EFI58610.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8]
          Length = 982

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 83/525 (15%), Positives = 176/525 (33%), Gaps = 86/525 (16%)

Query: 8   SLNESYELIYKDLWP--LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  E  E + K L    L    ++  + +    +      +      L ++       ++
Sbjct: 106 AAKEMAERVEKILGHSTLASPTLATFHSFCVRVLRRDIEALRVGNVGLTRSFAIYDENDQ 165

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            +++           +  I  + +  +      ++  +++  I  ++ F        T  
Sbjct: 166 QAVVKQAL------KRLGIDDKALKPRV--ALGRISWAKNHMIDPQEYFLAS-----TNP 212

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                 ++   Y++   K   LDF+DL++ T  LLK     + +R + +++  ++LIDE 
Sbjct: 213 MEEKIAHIFEIYKKELAKANALDFDDLLLETVRLLKSS---SEVRERYNRKYKYLLIDEY 269

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+++ L                +  VGDE QSIYS+ GA+ + +L  ++   
Sbjct: 270 QDTNRPQYELMKLL-----------GRHGNVCVVGDEDQSIYSWRGADIRNILEFEKDFP 318

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I L  ++RST  IL     V +     +G +                 
Sbjct: 319 --------DVRTIRLEQNYRSTQVILEGASAVVAQNTQRKGKN----------------- 353

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW        ++       +    D   +       A  IA  I   +        
Sbjct: 354 ----LW-------TAREGGSMIGYYEAPDGENE-------ALFIADRIKKYLKEAGASEE 395

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             +         VL R    + L+    R     Y+I       F   D   +KD+++  
Sbjct: 396 EPR-------CAVLYRTNSQSRLVEEALR----RYQIQYHMVGGFSFYDRSEVKDILSYL 444

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQH- 483
           + + +  D ++   ++ SP     +  +  +         + ++ I + +   +   +  
Sbjct: 445 KLVQNPHDSVALGRVVNSPPRGIGKTTMDTLERMALTVGMSSWDAIARASEEKLLPARAL 504

Query: 484 -VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
             +    +LI  A+     DF   +     G +        E  D
Sbjct: 505 TALNSFRKLIEDARAMLGPDFAAALTADAAGSELATEDTQLEDGD 549



 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 59/222 (26%), Gaps = 41/222 (18%)

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
           +  + I++      ++             +    +  +    +       +        E
Sbjct: 627 SASDTIKERLRQQNAEAPQAEDAPAPFRKLGDPATLPELIKFLNERSGYIRALEDEATPE 686

Query: 525 ---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
               I+ L E  N             + L   L+           +    V +MT+H AK
Sbjct: 687 SFSRIENLKELANAAQDATSRG----ETLAEFLDHAALVSDADQYSAEARVTLMTLHAAK 742

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE P+VFL      +F H                                         
Sbjct: 743 GLEFPLVFLTGMEEGLFPHSRSVVDPT--------------------------------- 769

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
              EE  RL YVGMTRA D L++ +          +      
Sbjct: 770 -QMEEERRLCYVGMTRAMDTLVMTRARYRRRYGNDSPEASMP 810


>gi|304373063|ref|YP_003856272.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis HUB-1]
 gi|304309254|gb|ADM21734.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis HUB-1]
          Length = 754

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 97/561 (17%), Positives = 181/561 (32%), Gaps = 127/561 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +  +Y     K  V+DF+DL I    L  +      I  K     + +L+DE QDTS IQ
Sbjct: 194 IYKNYVYYMNKANVVDFDDLQIFVKVLFTQ---IPEIAKKWSSFFDFVLVDEFQDTSSIQ 250

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+++ L           S    L  VGD  Q+IYS+ GA+   +L  ++      +   
Sbjct: 251 YEIVKLLI----------SKKTKLIVVGDPDQTIYSWRGADVNLILNLEKDFDNLIS--- 297

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RS+  IL   + + S  +N    +  S                     
Sbjct: 298 -----ITLNRNYRSSQTILDAANILISNNKNRIKKNLVSN-------------------- 332

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                        +  +    +   + S        +   I+N+              +Q
Sbjct: 333 -------QDKQELEIKFFDAANQNVEFS-------WVISEINNLRKN----------KVQ 368

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K+I +L R+      +            I+              I+D +   R I +  
Sbjct: 369 LKNIAILYRQHFYAKHLEDEL----FKENIAYKIVGNTSFNSKKEIRDAINFLRVI-NDG 423

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----------------FA 474
           + ++F  ++  P        + K+        + +Y+++                    +
Sbjct: 424 NVVAFSQVINIPSKKIGPTVLNKLTYLAEKYNKNLYDFLIDFYSKKIKFVNDKEDKIPLS 483

Query: 475 NCGISKFQHVIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFISRFGN--EVIDVLD 530
                K  H++ YI     + +       +     L        F    G   E  + L+
Sbjct: 484 KENQKKLTHLLSYIKAYRQLFEQGHKKFDELLKAFLQQIDYLSSFKHETGERKEAQETLE 543

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVF 589
           +F       +++  +  ++L   L+    +    +    N  + +MT+H AKGLE   VF
Sbjct: 544 KFYASLRVWQKHKPN--KKLRDYLDDSVLSSDLDNDYEANTSISLMTIHAAKGLEFQNVF 601

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF  K                                  ++   +   EE  R
Sbjct: 602 LIGMSEGVFPTKKT--------------------------------LESYDQELLEEERR 629

Query: 650 LLYVGMTRASDQLIICKHSNT 670
           L +V +TRA ++L I    + 
Sbjct: 630 LAFVAITRAKERLFISYSRSN 650


>gi|315612932|ref|ZP_07887843.1| DNA helicase II [Streptococcus sanguinis ATCC 49296]
 gi|315315042|gb|EFU63083.1| DNA helicase II [Streptococcus sanguinis ATCC 49296]
          Length = 955

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 111/833 (13%), Positives = 227/833 (27%), Gaps = 154/833 (18%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + + Y++   +  ++DF  +      +L +    + I   +   I +I++DE QDT+ 
Sbjct: 183 AKVVSVYQKMLDEENLVDFSSIQTECYRMLTEN---SNILESLRSSIKYIMVDEYQDTNY 239

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ +++  L                +  VGD+ Q +Y F GA  + +L            
Sbjct: 240 IQEQIVFLL-----------GKHENICVVGDDDQGLYRFRGATIRNILEFPSKFD----- 283

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
              K  +I L +++RS +DI+   +K       ++   E                     
Sbjct: 284 -EGKCEVIPLVVNYRSDSDIIDFYNKWMDTTSGSKFKFE--------------------- 321

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W +       + + +    ++    L  +         I   I+ +  +  I        
Sbjct: 322 WGKFRYSKRIEPHEKSPINSTCVAKLASKDDEDEWHENILNFINCLKESGKIQD------ 375

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                +  L    K   +I+           I+V      +  +   I   +     +  
Sbjct: 376 --YNQLAFLFSSVKHERVIS--LARFLEKNHINVYSPRSDMYFERDEIMQTLGCLMLMFP 431

Query: 431 QED---DLSFVCMLKSPLFNFSEDDI--FKICTQRHETETVYEYIQKFANCGISKFQHVI 485
                 +      L +  +++  D I        + E   +  +I++      S      
Sbjct: 432 HYVSGLEKGEYKYLDTEHYSYFSDCIKAANEFVTKPENIELKRFIREHGKEHYSLASSFS 491

Query: 486 KYIH-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
                    +         F+ IL                    L +      + E    
Sbjct: 492 GTTDYTYSGLIYRLFMFKPFSNILDTDLELGIV----DIRPARNLAKLTQIVGKFEYLHN 547

Query: 545 SSL-----------QELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             +           Q     L+                A    V  +T+H +KG+E PVV
Sbjct: 548 IDVITGKSIVKNTEQLFNMYLKLLYDGGIAEYEDDEEYAPSGCVSFLTIHQSKGMEFPVV 607

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F+          K  K +                     +     +  +        ++ 
Sbjct: 608 FVDSLS--NIPRKSYKDILSH----------------IEKKYYHREAFEPYDVMKMFDFW 649

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           RL Y   +RA + LI+    N +   K  +  + ++   +  +        + N   K+ 
Sbjct: 650 RLYYTAFSRAQNLLILTCDENKNTPSKYFKELYDELQPITSIDLNEFDFKTVKNVNLKNT 709

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +      + +                                           +  K   
Sbjct: 710 FSFTSHISVYET---------------------------------------CALQYKFYK 730

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI-------------TSYCTKNAKL 815
            LE +         G ++H+ ++ +           I              S   +    
Sbjct: 731 ELEFMPIRQGDMLFGTLVHQTIEDVHRAALKNETAKITTDNISNWFASNYLSLIKREHGY 790

Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
               +    L  + R +E        S     EV VS        D II G+ID +    
Sbjct: 791 LAEAQRNAALNQVLRYVERQNGNW--SSIQQVEVDVSLVQP----DYIIEGKIDLVKGEN 844

Query: 876 QNIFIFEYKTHHHVPQEIE-HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             + + ++K+      E        +  QL IY  +++     K     L Y 
Sbjct: 845 GTVELIDFKSEKKPDMEKMRDRLEHYRRQLHIYAHLIEQRTGQKVSKMHLYYT 897


>gi|256371278|ref|YP_003109102.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007862|gb|ACU53429.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 715

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 110/782 (14%), Positives = 209/782 (26%), Gaps = 153/782 (19%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P      VS  +   +  +             L+        ++  
Sbjct: 64  AAGEMAERVRSLVGPNADGLWVSTFHAACARMLRLHPE-----LGGLRSGWSIYDQDDAR 118

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            LL            K    + I ++    K +L          R       +++  +A 
Sbjct: 119 RLLERTIRRLDLDT-KRFPPRAIAQQVSLAKARL------VDPERFTDEAEGLYERQVAM 171

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y+ A  +    DF+DLI    + L        +     +   H+LIDE Q
Sbjct: 172 ------VYRSYQAALAEANAADFDDLIGLVVEGLAT---RPELAEHWRRRFRHVLIDEYQ 222

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D +  Q   +  L               ++FAVGD  QSIY+F GA+P  VL  +     
Sbjct: 223 DANPAQHAFVAELVG----------RSGSVFAVGDVDQSIYAFRGADPSGVLTFEERFD- 271

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     ++ L  ++RST  IL + + V +           S       + R     
Sbjct: 272 -------GAKVVTLEQNYRSTNAILGLANAVIAKNRRRYAKHLFSELGEGTPARRYQA-- 322

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                            +     AR +A T+   +         
Sbjct: 323 ---------------------------------TDERDEARWVAATVREFLQRG------ 343

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   +I V+ R    +  +            I           +   ++DL+A  R
Sbjct: 344 ---GVDPSEIAVIFRTNAQSRPLEEAFSE----AGIPFRVVGGVRFYERREVRDLLAYLR 396

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK--------FANCGI 478
            + + +DD++   +L  P           +             + +          +   
Sbjct: 397 VLANPDDDVALARILNVPRRGIGRGTEEALQAAAALRGRSMLSLLRAEGVEVLGLTSRQE 456

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEFLNF 535
              +  ++ I  L  +A    P +    ++      +             ++ + E    
Sbjct: 457 RALRGFVELIDRLGALASLHRPSELIDAVVAETSYLEHLNEEDPITLEGRLENIAELRAS 516

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +        +L S LE+             + V ++T H AKGLE  VV +V    
Sbjct: 517 AAEAD--------DLESFLERAALVSAVDEVMGASGVTLLTAHAAKGLEFDVVVVVGLEE 568

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            VF H                                  +   +     EE  RL YV M
Sbjct: 569 GVFPH----------------------------------VRAIVDAEAVEEERRLFYVAM 594

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA   L++      ++  +         +             +L   +           
Sbjct: 595 TRARTTLVLTSARRRASWGEPLYNPPSRFLD------------ELPADLVATTAAPVAVG 642

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
           T   E+          +    + +        +        + P  +D +          
Sbjct: 643 TACAESIQRASAVVEARAARSEWVVGDRVFHARYGEGTIRRVVPRGVDDELVIAFHGAGE 702

Query: 776 DN 777
             
Sbjct: 703 RR 704


>gi|300774389|ref|ZP_07084253.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300507033|gb|EFK38167.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 1046

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 134/863 (15%), Positives = 279/863 (32%), Gaps = 128/863 (14%)

Query: 81   QKNIITQEINKKSP--DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            +K   ++  +K+S   ++ ++L +++ + I +       +   S L  L + K +    +
Sbjct: 296  RKGASSKSKHKESEIFEILDQLLENRMKLILLYIETQKKEKVLSALLPLKVNKDIQDELQ 355

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKR---DVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            + +++N ++    L+   N L+ +    + SA+I  K+  +  H   DE QDTS +QW+ 
Sbjct: 356  KIEEENDLV----LLSKFNILINENLKNEPSAFIYEKVGSQFQHYFFDEFQDTSELQWQN 411

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
               L +     + T     +   VGD KQSIY F G E K +L        +   + ++ 
Sbjct: 412  FVPLRDHSVSTEYT-----SFTLVGDPKQSIYRFRGGESKLML----DIINKKEFSPKEA 462

Query: 256  SIIELPLSFRSTADILTVVDKVFS-IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             ++ L  ++RS  +I+   ++++    E      ++       +S+R    G V++    
Sbjct: 463  DLLVLKDNWRSARNIVQFNNELYRFHSEGLLEEHKNIFGADAEQSARSKIEGRVKI---- 518

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                               +   ++      AR     I   +              +  
Sbjct: 519  ---------------NLIDNLTNEDFYTDTSARM-QKDIQECLDNG----------FKFS 552

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDY-----KISVVGNDRFILTDHLAIKDLMALGRFIL 429
            DI +L R   D    +     LK +Y      I  + +    L     +K ++   R+ L
Sbjct: 553  DITILCRGNFDIFSYSQKLGSLKVNYKGEETNIKTISDKGLTLELSNTVKAVIEFLRWEL 612

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY-- 487
            + +           P        +  +        T         +      Q + +   
Sbjct: 613  NPK---------NKPCLIMMMYHLNTLGKIHMPDFTSGMKEILDIDGHEEILQFIQERYS 663

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
            I          + ++F    +       +          D L  FL       QN+ +S 
Sbjct: 664  IQLKQDNFPRFNLYNFIEYYINEFSVENKET--------DFLLNFLEMLFNFTQNAGAST 715

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +E +   ++   +     S N + ++IMT+H +KGLE P+VF+        S        
Sbjct: 716  KEFLKYWDEEASSYTIQASENIDAIQIMTIHKSKGLEFPIVFIPMMNKNRDSEFTNWFDT 775

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                      I  +    ++ +  +             +   L YV  TR  +QL     
Sbjct: 776  NENKTLKSVNINQFSKNLEAYDEEILFFNTKNAYKNLIDRLCLQYVATTRPVEQLFFYL- 834

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                 +K +      +++      +           ++ +    +               
Sbjct: 835  -----QKPNKTSNNLELLEFLQTKNPEQADEFDVYPVHPEMLKKHSR------------- 876

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
                          K  S    +I     ++  +   K  T  ++    N+    GL +H
Sbjct: 877  -------------DKTSSFKTQNIRHLKNISEKSTSIKIATPSKNYQVRNEKVRIGLFVH 923

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
            +LL  I    E      +  Y  +       +E   +  ++  ++               
Sbjct: 924  ELLSKI--NTEKDIIKVLEGYALE--GQITLEEKNEIQATLQEIVRT--YAEFFDEK--W 975

Query: 848  EVSVSGKI--NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
            EV     I      +  I   R D+I   ++   I ++KT     ++          Q+ 
Sbjct: 976  EVINEKDIMITERGESHIF--RPDRILKGEEGYIIVDFKTGEPKAKDEA--------QVE 1025

Query: 906  IYEKILKDSYPNKSL-VCLLIYV 927
             Y+ IL+     K +    +IY+
Sbjct: 1026 GYKNILERL--GKKVLKTQIIYL 1046


>gi|302385714|ref|YP_003821536.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
 gi|302196342|gb|ADL03913.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
          Length = 614

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 97/568 (17%), Positives = 184/568 (32%), Gaps = 128/568 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + K L   YE   +K  ++DF+D+++   +L  +      I     ++  +IL+DE QD
Sbjct: 162 EIFKQLYLEYENRLRKANLIDFDDMMVMCYELFVQ---RKDILEAWQKKYRYILVDEFQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q+E++R L                LF VGD+ QSIY F GA+P+ +L  ++     
Sbjct: 219 INRVQYEIVRMLAA----------PENNLFIVGDDDQSIYRFRGAKPEIMLGFEKDYP-- 266

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L ++FRST +I+    K+ +  E                         
Sbjct: 267 ------GAKKVLLNINFRSTKEIVEAAGKLIAHNEMRFPKR------------------- 301

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                 ++++  +        W    +   +          I   I              
Sbjct: 302 ------IITKKGTGKPVITRVWQDPQEETLE----------IVREIMAYAKAG------- 338

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
                  D+ VL R          L      ++ I     D    L DH   K++++   
Sbjct: 339 ---FDWPDMAVLFRTNLGPR----LLIEKLMEFNIPFSMKDSVPNLYDHWIAKNIISYIH 391

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                    + + +L  P    S D +          ++ Y+                I+
Sbjct: 392 VASGDLTRANVLQILNRPNRYVSRDAVETSPVSWEGIKSFYQ--------DKGWMVERIE 443

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKG------RQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +   + + +  +P      I  A           Q+      E+++VLD+         
Sbjct: 444 QLEYDLKMIRNMAPVAAVNYIRKAVGYDDYIREYAQYRRMKPEELLEVLDQLQESAAGYL 503

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNE---VRIMTVHTAKGLESPVVFLVDTGSQV 597
            +     +E    ++ Y   +K    +       V +MT+H+AKGLE  +V+++D    V
Sbjct: 504 TS-----EEWFRHMKDYGEELKAQAQSGEGRARGVALMTMHSAKGLEYRIVYILDANEGV 558

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H                                         +  EE  R+ YV MTR
Sbjct: 559 TPHHKAVLP-----------------------------------ADMEEERRMFYVAMTR 583

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             ++L +       ++K+   R   + +
Sbjct: 584 PKERLHVNYVRERYSKKQEVSRFVREYL 611


>gi|182412468|ref|YP_001817534.1| UvrD/REP helicase [Opitutus terrae PB90-1]
 gi|177839682|gb|ACB73934.1| UvrD/REP helicase [Opitutus terrae PB90-1]
          Length = 1109

 Score =  217 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 135/959 (14%), Positives = 284/959 (29%), Gaps = 139/959 (14%)

Query: 34   YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKS 93
              +   E      ++        +           +    L      +      E ++K 
Sbjct: 233  DAAGVGEKQRQRWMEFFDACVAWAPGIAPVRPLVYVLEKVLAAWSDLEAGRAVLEFDRKP 292

Query: 94   PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL- 152
             +L      +     +        +  + T     +     A Y +A ++   L F D+ 
Sbjct: 293  QELSAAACAALAALARHVVGGELTRRLEMTSGIYAVLAGYEAMYHDAVRRAGKLTFADVQ 352

Query: 153  ------------------------------------IINTNDLLKKRDVSAWIRYKIDQE 176
                                                +     L    +    I Y++D E
Sbjct: 353  RLLMPGNGAPLLSGREAPGAVPDDDADSQLALPSMELGEAAALSGAEERRLLIDYRLDGE 412

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            I+H L+DE QDTS  QW V+R+L ++        S  R+ F VGD KQ+I+++   +P+ 
Sbjct: 413  IDHWLLDEFQDTSFGQWSVLRNLIDEAVQ---DSSGARSFFYVGDVKQAIFAWREGDPRL 469

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE------D 290
                + I            +   L  S+RS   ++  V++VF        L         
Sbjct: 470  ---FREIFDHYNAMRPGTIAEEHLVKSWRSGPAVIASVNRVFGAAAELTELFACPATQTW 526

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
            +     H ++R    G V L      +  +  + +     +                   
Sbjct: 527  NREWRAHETARPQLAGHVALLHAGGPRDTAGISEEARFALTL------------------ 568

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
                 ++      + G           VLV+K      +    R  +     +V  +D  
Sbjct: 569  ----ALLEEIQPLARGL-------SCAVLVQKNSTATALADRLR--RAGGIAAVAESDLH 615

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
            + TD+     L+AL +      D  ++  +  SPL                         
Sbjct: 616  VCTDNPVGTALLALAKAAAHPGDTRAWEHVQMSPL-----------------------AS 652

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
               A    +  Q   + + E+       +  ++   +          ++       + L 
Sbjct: 653  VLHAQHVRTPEQLTRRLLTEIHRDGFERTFGEWARRLEPR-------LASDDAFSRERLR 705

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            +F       +      + E I+ +E+           + + VR+MT+H AKGL   VV L
Sbjct: 706  QFAAAAGLFDATGSRDVAEFIAFMER----HVVREVESADVVRVMTIHKAKGLGFDVVIL 761

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ-SKSRNNIVSDLIKHLKKSTQEEYNR 649
             D   Q    +                +     +     + I+++ ++  +     E   
Sbjct: 762  PDLEGQKLDSRRDGLAVQRGPDRQVEWVLDLPGKLIHDCDTILAEHVRAAEADACYEALS 821

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LLYV MTRA   + +      ++  ++  R    ++  +   +    ++           
Sbjct: 822  LLYVAMTRAKRAMYLVVKPPGASSSRNYPR----LLARTLGEETIPVRVGAREFAGAFSE 877

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                W          +   ++ +   E        SP +     P     S   T+    
Sbjct: 878  GDPRWHLDLQPAIAADAATSVVRQRIEPLRSAAAKSPRRLVARRPS----SVQGTQWMGA 933

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                 +       G  +H+LL  +        ++  T +  +        E         
Sbjct: 934  QLFSAARTDRTEFGTAVHRLLAEVEWGTPATAQSMTTEWRARGEDAAVVAEA-------A 986

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ------NIFIFEY 883
              LE+P +       + +EV          +D+ +SG  D++ + +          +F++
Sbjct: 987  GCLESPALAHVWRSAANAEVWRERAFEIVLEDVWVSGIFDRVIVWRDAAGRPIRASVFDF 1046

Query: 884  KTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNK 939
            KT       + + +   H  QL++Y ++       P  ++    ++    +   +    
Sbjct: 1047 KTDRVGESPQWDELARRHAGQLNLYRRVATVLTGLPAMAITSEAVFTRARRAVAVTDAT 1105


>gi|28210690|ref|NP_781634.1| DNA helicase II [Clostridium tetani E88]
 gi|28203128|gb|AAO35571.1| DNA helicase II [Clostridium tetani E88]
          Length = 698

 Score =  217 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 98/542 (18%), Positives = 186/542 (34%), Gaps = 109/542 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE  K     LDF+D+ I   +LL      + I  +   +  ++LIDE QD   +Q 
Sbjct: 192 YDEYERYKSLKNKLDFDDIQIKCRELLVNN---SEILNECRNKFKYLLIDEFQDCDHMQL 248

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +++ L           +   ++FAVGDE Q IYSF GA+P+ ++   R   +       
Sbjct: 249 SILKML-----------NKDNSIFAVGDEDQCIYSFRGAKPEGMVDFPRYFHQ------- 290

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I L +++RS  +I+ +   +  I +        +                      
Sbjct: 291 -GEKIFLKINYRSGENIVELSKNLIKINKLRSSKEIFTYNKF------------------ 331

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                   +     I +      I N++    +  N +K+    
Sbjct: 332 ------------------------EGKINIIYSEDEKEQIENILKE--VLYNIEKKGYNF 365

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           KDI +L R+  +  +I         ++ +       F + +H    D+++  +  L  ++
Sbjct: 366 KDIAILYRRNTEALIIIDYFLRNNVEFNL---NQKYFNIYNHFICNDILSYIKLSLDNKN 422

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
             SF  ++  P    S+  I K+   R +    ++ +       +      IK +   I+
Sbjct: 423 RHSFTRIINKPFRYISKTHIEKLKGFRRKD-NCFDIMCNLNISLLQI--KTIKALKRNIN 479

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--TLRNEQNSYSSLQELI 551
             +          I+      +   S      ID  +E L     L+     ++SL++ I
Sbjct: 480 KIKKLDIDKIVDYIMKDIGYEEYIHSYSKKLKIDE-EELLYIVYVLKKALEDFTSLEDFI 538

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             +E    +  +A     N + + ++H++KG+E   VF+++       H           
Sbjct: 539 RYIE---ESKNKALEKKENAITLSSIHSSKGMEFKSVFIINCNDGNIPHNSNVN------ 589

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                        K   EE  RL YV +TR+   L +C  SN  
Sbjct: 590 -------------------------DLEDKFKLEEERRLFYVALTRSISNLNLCICSNIR 624

Query: 672 NE 673
            +
Sbjct: 625 GK 626


>gi|312194643|ref|YP_004014704.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311225979|gb|ADP78834.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 1140

 Score =  217 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 116/929 (12%), Positives = 248/929 (26%), Gaps = 174/929 (18%)

Query: 92   KSPDLKEKLKKSQDEFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
            ++    E+++       +  +          ++              Y +    +  LD+
Sbjct: 179  RTRGFAEEVEALLARVREVGLDPASLEELAARARRPDWAALARFYTDYLDNLGYDGALDY 238

Query: 150  EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
             +L      L++  +    IR         + +DE QDT   Q  ++ +LT         
Sbjct: 239  PELGHRAARLVEDPERGQPIR----DRYRAVFVDEYQDTDPAQERLLAALTA-------- 286

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  L A GD  QSIY+F GA  + +L      ++          ++ L +S R +  
Sbjct: 287  --GGGDLVAFGDPDQSIYAFRGARVRGLLDFPARFRR---ADRSPADVLALGVSRRMSPP 341

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            +L    +V S    +           R   +     G V+         +++        
Sbjct: 342  VLAASREVASRLPVSGLPVWALRAHRRLAPAEPDHAGEVEALSFPSEGAETEA------- 394

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                                   I++++  + +      R +   ++ VL R  +  P +
Sbjct: 395  -----------------------IADLLRREHLT-----RAVPWHEMAVLTRSAEALPAV 426

Query: 390  TFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLF 446
                        + V        L +  A   L+   R         +     +L SPL 
Sbjct: 427  ARALTA----AGVPVDLAGDEPPLAERPAAALLLTALRCADDPGSLTTADARSLLLSPLG 482

Query: 447  NFSEDDIFKICTQRHE-------------TETVYEYIQKFANCGISKFQHVIKYIHEL-- 491
                  +  +     +                  +     +    +      + I +L  
Sbjct: 483  GADPAGLRALGRALRDHARSAPGEAVAAADGADSDQAPGSSVGWPAGLVSSAELIRDLVA 542

Query: 492  ----------------------------IHIAQFCSPHDFFTLILGAKKGRQQF------ 517
                                          +    +P D    +        +       
Sbjct: 543  DPGSLPGPVPAELARPAVQVGSLLALVGRRLRAGVTPQDALWALWEGTAWPARLRRVSAS 602

Query: 518  ----ISRFGNEVIDVLDEFLNFTLRNEQNSYS--SLQELISELEQYP--PTIKRAHSANH 569
                  R     +D +    +   R  +        Q LI++L         +       
Sbjct: 603  GYGAARRAAEADLDAVVALFDAAGRLGERRGPGGGAQGLIADLTSQDFAADDRAGAEVRP 662

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            + VR++T H AKGLE  VV +       +     +   +     D P      P    R+
Sbjct: 663  DAVRLLTAHRAKGLEWDVVVIRGVQDGAWPDLRAQHSLLGTEQLDAPQRGGLRPPETPRD 722

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDS 688
                            E  RL YV +TRA  +L++        +         ++ V  +
Sbjct: 723  -------------RWAEERRLFYVAVTRARHRLVVTAVDAVGADGARRSELLAELGVRIT 769

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                   + + L + +     +A +            R       + +      + S   
Sbjct: 770  SGASWTPRPLTLPSLVATLRRLAADPGATPALRQAARRRLATLAAVTDHADRPLVLSAHP 829

Query: 749  ----------------NDINEPYILNPSTIDTKGKTNLESLLSDN--------QTFNRGL 784
                                 P  L+ S++ +    +L   L              + G 
Sbjct: 830  DRWWGARDETASDVPVAAPTAPIPLSGSSLSSLRDCSLRWFLEHEAHAGQPATTAQSFGR 889

Query: 785  IIHKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE---N 834
            ++H L   +              R + +       A+    +E      ++ R L+    
Sbjct: 890  VVHALADEVTAGRTPADLAALDARLDLVWRQLAFEAQWRSDQERTAARQALARFLDWHAA 949

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEI 893
                  +     SE      +    + + + G +D+I +     + + ++KT        
Sbjct: 950  ERGRAVLG----SEARFGIDLTVDGRPVRLRGSMDRIELDDGGQVHVVDFKTGRSA-VSP 1004

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
              I      QL  Y+  +++   +  +  
Sbjct: 1005 REIAEH--VQLGTYQLAVREGAVDDRVTT 1031


>gi|111225392|ref|YP_716186.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111152924|emb|CAJ64672.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 1170

 Score =  217 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 121/974 (12%), Positives = 258/974 (26%), Gaps = 107/974 (10%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDIN--------KYVSLSMETGNPTILKKAQTLQQASQT 59
            +  E  E I   L P                   + +  +               +    
Sbjct: 100  AAGELRERITARLGPGGSASRGGPGSGGGPGAWTFHAWCLALLRAHDRPAPHGGFRLLSG 159

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
               + R   L               + + +  +    + +   ++   + +         
Sbjct: 160  PERDSRLRELIEGSREDGRPVWPPQLARALGTRGFTEEVRALLARAREVGLEPVGLAQLA 219

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             ++              Y +       LD+ DL+     + +  +        +     H
Sbjct: 220  RRTDRPDWAALAEFYEMYLDVFGFEGALDYADLVHRAVVVAEGAEAGE----ALRARYRH 275

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            + +DE QDT   Q  ++R++              R L   GD  QSIY+F GAE   +L 
Sbjct: 276  VFVDEYQDTDPAQERLLRAVAG----------GGRDLVVFGDPDQSIYAFRGAEVAGLLD 325

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +         G    I+ L    R     L     V      A     +         
Sbjct: 326  FPQRFGT--PGRGGGAPIVALRTGRRMAPAPLLASRHVARRIPAAGLPVAEIRAHRDLIG 383

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG- 358
                  G VQ+     +  +++            ++ P  + A ++  R A  I+ +   
Sbjct: 384  RTDLGAGRVQVRTYPSAGAEAEAVADLLRREHLENATPWPAMAVLV--RTADRIARLRRV 441

Query: 359  ----------TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
                              ++       + +         L     R L       + G D
Sbjct: 442  LTAAGVPVSVDGDDLPVAQEPAAALLLLALRCADNPAGALTADAARTLLTS---PLGGAD 498

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
               L +                ++                +          R        
Sbjct: 499  PAGLRELGRALRAFDRDAGAGDRDAGAGDRDAGGGDRDAGARQPAASAELVRQAVADPDR 558

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            ++ + A+      + V   +       +    SP      +  A   +Q  ++       
Sbjct: 559  WLVRVADPVARPARRVGDLLVVARRALREPAGSPEQALWALWSASGWQQALVAASAAGGA 618

Query: 527  ---------DVLDEFLNFTLRNEQNSYSS------LQELISELEQYPPTIKRAHSANHNE 571
                     D +    +   R  Q           + EL  +             A    
Sbjct: 619  AGRAADRDLDAVVALFDAVARLAQRRGPGTGAASLVDELGRQQIAADAIAPVGEDARRRG 678

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            VR++T H AKGLE  VV +      ++     +   +     D P      P        
Sbjct: 679  VRLLTAHRAKGLEWDVVAVCGVQDGIWPDLRERHSLLGAEQLDAPARGGLRPPLT----- 733

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFH 690
                    ++    +  RL YV +TRA  +L++   ++  ++     R   ++ V     
Sbjct: 734  --------RQDLLADERRLFYVALTRARRRLLVTAVNSPDDDGSLPSRLLDELGVAVENI 785

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN- 749
            +    + + L   +     +A E ++         R         +      + +     
Sbjct: 786  SGRPARPLTLVGLVATLRRLATEPTSSPALRAAARRRLAALAAARDDAHRPLVPAAHPTT 845

Query: 750  ---------------DINEPYILNPSTIDTKGKTNLESLLSDN--------QTFNRGLII 786
                               P  L+ S++ + G  +L   L                G ++
Sbjct: 846  WWGLLDVTDSDVPVVAPGAPLRLSGSSLSSIGTCSLRWFLEHEAHAVTVASTAQGFGKVV 905

Query: 787  HKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            H L   +              R + +  +    A+    +E      ++ R L       
Sbjct: 906  HALADEVTTGRTPADLAALDARLDTVWRHLDYEARWRSDQERAAAREALARFLAWHAGER 965

Query: 840  AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPY 898
                   +EV  + +++   +++++ G ID++ +     + + ++KT    P   E    
Sbjct: 966  -GRRVVDAEVRFTCRLHVAGREVMLRGFIDRLELDDAGRVHVIDFKTGRSAPGRAELAT- 1023

Query: 899  THIAQLSIYEKILK 912
                QL  Y+  ++
Sbjct: 1024 --HPQLGSYQLAVR 1035


>gi|330723317|gb|AEC45687.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis MCLD]
          Length = 751

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/561 (17%), Positives = 181/561 (32%), Gaps = 127/561 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +  +Y     K  V+DF+DL I    L  +      I  K     + +L+DE QDTS IQ
Sbjct: 191 IYKNYVYYMNKANVVDFDDLQIFVKVLFTQ---IPEIAKKWSSFFDFVLVDEFQDTSSIQ 247

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+++ L           S    L  VGD  Q+IYS+ GA+   +L  ++      +   
Sbjct: 248 YEIVKLLI----------SKKTKLIVVGDPDQTIYSWRGADVNLILNLEKDFDNLIS--- 294

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RS+  IL   + + S  +N    +  S                     
Sbjct: 295 -----ITLNRNYRSSQTILDAANILISNNKNRIKKNLVSN-------------------- 329

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                        +  +    +   + S        +   I+N+              +Q
Sbjct: 330 -------QDKQELEIKFFDAANQNVEFS-------WVISEINNLRKN----------KVQ 365

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K+I +L R+      +            I+              I+D +   R I +  
Sbjct: 366 LKNIAILYRQHFYAKHLEDEL----FKENIAYKIVGNTSFNSKKEIRDAINFLRVI-NDG 420

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK-----------------FA 474
           + ++F  ++  P        + K+        + +Y+++                    +
Sbjct: 421 NVVAFSQVINIPSKKIGPTVLNKLTYLAEKYNKNLYDFLIDFYSKKIKFVNDKEDKIPLS 480

Query: 475 NCGISKFQHVIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQFISRFGN--EVIDVLD 530
                K  H++ YI     + +       +     L        F    G   E  + L+
Sbjct: 481 KENQKKLTHLLSYIKAYRKLFEQGHKKFDELLKAFLQQIDYLSSFKHETGERKEAQETLE 540

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVF 589
           +F       +++  +  ++L   L+    +    +    N  + +MT+H AKGLE   VF
Sbjct: 541 KFYASLRVWQKHKPN--KKLRDYLDDSVLSSDLDNDYEANTSISLMTIHAAKGLEFQNVF 598

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L+     VF  K                                  ++   +   EE  R
Sbjct: 599 LIGMSEGVFPTKKT--------------------------------LESYDQELLEEERR 626

Query: 650 LLYVGMTRASDQLIICKHSNT 670
           L +V +TRA ++L I    + 
Sbjct: 627 LAFVAITRAKERLFISYSRSN 647


>gi|320108652|ref|YP_004184242.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
 gi|319927173|gb|ADV84248.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
          Length = 927

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 73/469 (15%), Positives = 154/469 (32%), Gaps = 79/469 (16%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            ++   Y++   KN  LDF+DL++    LLK     + +R + ++   ++LIDE QDT+ 
Sbjct: 176 AHIFESYKKELFKNNALDFDDLLLEAVRLLKSS---SEVRERYNRRYQYLLIDEYQDTNR 232

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L            +   +  VGDE QSIYS+ GA+ K +L  ++        
Sbjct: 233 PQYELMKLLAG----------TRGNVCVVGDEDQSIYSWRGADIKNILEFEKDFP----- 277

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
              +  +I L  ++RST +IL     V       +G                        
Sbjct: 278 ---ETKVIRLEQNYRSTQNILEAAGAVVKNNVQRKGKELF-------------------- 314

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                    ++       +    D   +       A  IA  I   +       +  +  
Sbjct: 315 --------TTREGGSMIGYYEAPDGENE-------ALFIADRIQTYLREAGQKEDAPR-- 357

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  VL R    + L+    R     Y+I       F   +   +KDL++  + + +
Sbjct: 358 -----CAVLYRTNSQSRLVEEALR----RYQIQYHMVGGFSFYERAEVKDLLSYLKLVQN 408

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQH--VIKY 487
             D ++   ++ SP     +  +  +         + ++ I++     +   +    +  
Sbjct: 409 PRDSIALGRVVNSPARGIGKTTMETLERMALSTGLSTWDAIERAIQEQLLPARALTALAG 468

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQF--------ISRFGNEVIDVLDEFLNFTLRN 539
              LI  A+     +F   +     G +               +   + +D   + +   
Sbjct: 469 FRRLILDARAMLGSEFAETLAADAAGEEAVDESVEFVGQEENASTEDENVDTSFDTSFNF 528

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             +   S +E+ +   +           + +         +       V
Sbjct: 529 GFDFGPS-EEISTIAAENSVGSDSDVDTSFDAAAFNPFAASTQKHETRV 576


>gi|34763240|ref|ZP_00144202.1| DNA helicase II [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887093|gb|EAA24202.1| DNA helicase II [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 919

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 131/876 (14%), Positives = 270/876 (30%), Gaps = 182/876 (20%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            +++   + +     +  +++   +   +     YE+   +N ++DF  L +   ++L  
Sbjct: 160 LRNKINDLNENAIDIESVQTSDIYINFIRSAYKLYEKQLFENNIVDFSYLQVEFLNMLLN 219

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               A    KI+   ++I++DE QD++ IQ +++ S++++           + +  VGDE
Sbjct: 220 N---ADFLEKINNYFDYIMVDEYQDSNKIQEKILLSISKN----------KKNICVVGDE 266

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA  + +L   +           +  +I L  ++RS   I+   ++  +  +
Sbjct: 267 DQSIYRFRGASAENILNFSKHF------TNNECKLIVLNENYRSVNHIVEFNNRWINAID 320

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +   E +  ++R                                + +        ++ 
Sbjct: 321 WHENRFEKNIVSMRKN-----------------------------DYMASNVFHISGNTL 351

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
               R     I  +  ++ I             I VL            L   LK +  I
Sbjct: 352 DENIRNTVTFIKKLKQSNKIT--------NYNQIAVLF-SHFKDRSAKKLEDALKKE-NI 401

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            V      +  +   +K                          F        K   +   
Sbjct: 402 EVYSPRTKVFFEMYEVKL------------------------TFGIILACFKKYFPEEAL 437

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIA---QFCSPHDFFTLILGAKKGRQQFIS 519
              + E     A   I K    + +I E I       F S ++ F  +L     +     
Sbjct: 438 DIYLLE-CLDLARLEIRKDNEFLAWIKEKIENISEYSFNSLNEIFYELLSFSYYKNVLEE 496

Query: 520 RFGNEVID--VLDEFLNFTLRNE---QNSYSSLQE--------LISELE----QYPPTIK 562
               E      L          +    +   S+++            LE         I 
Sbjct: 497 EGPIEARANHNLAILSKIFKNFQKYVHSKKISIEDDFSIIKYFFTKYLEILKQSRVDEIF 556

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                 ++ +  +T+H +KGLE PVV +    +       + +   +  L +        
Sbjct: 557 SEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYTTPNVSGDLSRQTSIDRLINSN------ 610

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                  ++ R  YV  +RA + L++  +    +E   N + ++
Sbjct: 611 ------------SKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSE---NFKPFF 655

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             V         + +I L     KDE     ++T                      I   
Sbjct: 656 YSVRGVNSLQFDINQINLDEVTKKDEIKILSYTT---------------------DIALY 694

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT------- 795
            + P+K  +      +                 D + FN G+I HK ++ I         
Sbjct: 695 RYCPMKYFLVREKEYS---------------TFDKKVFNLGIITHKAIEHINKSFLQKQK 739

Query: 796 -LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
              ++  KN + +              + ++  + + +++             E S   +
Sbjct: 740 IFSDNYIKNLVKNIYKFQNIDLD-NNVERIIDIVKKYIKDE--KDNFKYIKKVEAS---E 793

Query: 855 INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 + I+ G+ID I   +  I I ++KT  +           +  QLS+Y+ +L+  
Sbjct: 794 FRVED-NYILYGQIDLILEDENEIKIIDFKTGKY---NEIEFSSNYRQQLSLYKLLLQKK 849

Query: 915 YPNKSLVCLLIYVSE---PKVFIIPQNKLNKAFAEI 947
           Y +K +   L Y+ E    K  +I    L +    I
Sbjct: 850 Y-DKDIKTYLYYLEEDDPKKEILIDDEDLKEDLENI 884


>gi|311743791|ref|ZP_07717597.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
 gi|311312921|gb|EFQ82832.1| ATP-dependent DNA helicase [Aeromicrobium marinum DSM 15272]
          Length = 1050

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 133/973 (13%), Positives = 280/973 (28%), Gaps = 163/973 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +   L        +        ++        + A      +  +       
Sbjct: 83  AAEEMRARVAARLGGTAAPVRAMTFHAWCYALVRQFADPEEFAAPPTLMTAAEQDAVLAE 142

Query: 68  LLSSFFL-TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           LL+     T     +  + T+    +       L         +R              +
Sbjct: 143 LLAGHDPSTWPAGLRPALRTRGFATEVGGFLSSLASGGRTTDDLRRL-----AADLDRPA 197

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y        + D+ +L++  + LL   + SA +R+ +      +++DE Q
Sbjct: 198 WARVADALEEYGAVTDAQNLTDYAELVVRASALLDDPEASAAVRHDL----RLVVVDEYQ 253

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT  +Q EV+R L              + L AVGD  QS+Y F GA+   + R     + 
Sbjct: 254 DTDTLQVEVLRKLVG----------PAQQLVAVGDHDQSVYGFRGADVANMARFTDHFE- 302

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +  L  + R    I      V   P    GL  +     R  +      G
Sbjct: 303 -------GAEVRALRTTRRFGPRIRAAATAVL-PPGQPGGLPVEVVRQHRDLACVAASEG 354

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V++        + +                               I+ ++  + +    
Sbjct: 355 EVEILTFATPAAEVE------------------------------HIAQLLRREHLEGGR 384

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   D+ VLVR       +    R L        V  D   L    A++ L+    
Sbjct: 385 -----PWSDLAVLVRTSAQLDRLH---RALVAADVPCEVAGDEIPLVAEPAVRVLLGALG 436

Query: 427 FILSQE-----DDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------VYEYIQKFAN 475
                      +      +L  PL      D+     +  +T+       +        +
Sbjct: 437 AADRLARGEELEPELAHTLLTGPLAGMDAPDLRSFARRLRDTDRETPSRVLLARAVSGLH 496

Query: 476 CGISKFQHVIKYIHELIHIA-----QFCSPHDFFTLILGAKKGRQQF----------ISR 520
            G  +     + + EL+  A     +   P      +       ++            + 
Sbjct: 497 AGDHELDPAARRLAELLARAADLVQRREPPEQVLWELWDGTDWPRRLDLAWESGGADRAA 556

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVH 578
              ++  V+  F +     E+++  ++Q  +++L             +A    VR+MT H
Sbjct: 557 ADRDLDAVVALFHHAARSEERHTRRTVQAFLADLRSQQLPADRLADSTARPAAVRLMTAH 616

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGLE PVV +      ++ +   +   + P L D   +                    
Sbjct: 617 RAKGLEWPVVVVAGVQEDIWPNLTARPSLLRPDLLDGSPVT------------------- 657

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK-K 697
             +    E  R+LYV +TRA ++L++      S E +   R   ++      +   V+ +
Sbjct: 658 -ARDRLHEERRVLYVALTRAGERLVVTAVDPGSAEAEGPSRFVAELAAAGSDHGFGVESR 716

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETI------------KQLMDEQKIPKKLFS 745
           +   +       +         +  P  R                   +        L  
Sbjct: 717 LGRPSRPMSLRSVITALRRCAADPDPEVRASAAGLLARIAGHGSPNARVAHPDTWWGLVD 776

Query: 746 PIKNDINEPYI-----LNPSTIDTKGKTNLESLLSDNQTFNRGLII-------------- 786
           P +++           L+ S+I +    +L+  LS     +RG                 
Sbjct: 777 PTRSEAPLRDPEQSLGLSGSSITSITGCSLKWFLSSEANGSRGSSTAQGFGLVVHAVAAD 836

Query: 787 --HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
              + L+           + +             +E      ++          T  + +
Sbjct: 837 VVRRGLERPTAAELQAHLDAVWHRLGHETAWIGERERAEAHQAL------ARFATWHAAN 890

Query: 845 SY----SEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYT 899
           +     +E     ++    + +++ G +D++ +  +  + I ++K   H P   E +   
Sbjct: 891 ARTPLAAEHEFRAELVVDGETVVLRGSMDRVELDAEGRVHIVDFKNSKHAPAAAEVLQ-- 948

Query: 900 HIAQLSIYEKILK 912
              QL +Y+  + 
Sbjct: 949 -HPQLGVYQLAIA 960


>gi|221134829|ref|ZP_03561132.1| exodeoxyribonuclease V, beta subunit [Glaciecola sp. HTCC2999]
          Length = 1222

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 117/857 (13%), Positives = 253/857 (29%), Gaps = 146/857 (17%)

Query: 141  KKKNCVLDFEDLIINTN-DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K++  VLD  D I     +++   +    +   I Q+    LIDE QDT   Q+ +   +
Sbjct: 352  KQRQGVLDHSDTIHLLYQEIMSGNE---QLIAYIRQQYPIALIDEFQDTDAEQYSIFHQV 408

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                       +    L  +GD KQ+IY F G +    L   +                 
Sbjct: 409  Y-------PPKNKELMLLMIGDPKQAIYGFRGGDVFTYLNAVKD----------ACFHWS 451

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ---------- 309
            +  ++RST  ++   + +F   +  Q      T+     S        V           
Sbjct: 452  MDTNYRSTPSVINGYNTLFYGLDITQSKLSSMTSWATSLSDAPNTEPPVPEKELFDYHIQ 511

Query: 310  -LWEQVVSQHDSQCNPQQESWTSYFDS----------------LPQESSASILARRIAYT 352
              W    S   +   P ++  +                     L + S+  ++++ +A  
Sbjct: 512  YNWILATSLAKANNTPLKDECSDAGTHFFHYQMQEGNELQPAMLDKISAQILMSKWVANE 571

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            I  ++ + T+      R++Q  DI +LV KR    LI  +      +   SV+ ++R  +
Sbjct: 572  IQRLLTSVTLGD----RLVQPADIAILVNKRAQGDLIKRVFAQCGLN---SVILSNRNSI 624

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                   +L      +L+   +  F  ML + L     +D++ + ++  + E        
Sbjct: 625  FTSQQATNLYRFLHGLLNFNQERPFKTMLATDLMGCQPEDLYALDSRPDDIEQYKLA--- 681

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDE 531
                         + +H+                                 E  +    +
Sbjct: 682  -----------AHQLLHKWQDEGILVMLTHVLKTRFTLYG------DCLDAERIMTNYMQ 724

Query: 532  FLNFTLRNEQNSY---SSLQELISELEQ--YPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
              +     E+ +     +   L  +L          +   ++   ++I+T+H +KGLE P
Sbjct: 725  LADLLNEFERTNPLPSMTASFLYEKLAAGNEADEYYQRLESDSELIKIVTIHGSKGLEYP 784

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +VF+           + K         +      ++ +   ++ I         +  Q E
Sbjct: 785  IVFVPFDSFGNRDLINSKAKFTTFYDTNAQEKRHFLARLPVKDAI-------QIEQAQRE 837

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKS--------NQRTWYDMVYDSFHNDERVKKI 698
              RLLYV +TRA+ +  +   S    +  +             Y ++            +
Sbjct: 838  ALRLLYVAITRAAHRCYLGYQSIHYADNTAIHHMLAKVADTHDYSVIEYMEALAGADSSL 897

Query: 699  KLTNSINKDEWIA----YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
              +++I  +  ++              T     ++  ++     I  +      N     
Sbjct: 898  FASHTIPDNLHLSMYSKLSNQPDLKALTYTGPTQSQWRIYSYSSIVNRTKEIDLNAKTHS 957

Query: 755  YILNPSTIDTKGKTN-LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
                 S   +  + + L    +  +  N G ++H +L+                      
Sbjct: 958  DDHAKSDRSSDKQDDTLPLRFTLTKGANAGQLLHNVLEHSDFTEALDNTLIEQECLKFLP 1017

Query: 814  KLWPAKEYKNLLLSITRLLENP----------MMTTAMSCDSYSEVSVSGKINC------ 857
                  +   +   +  +L  P          M+      ++  E      +        
Sbjct: 1018 DH--QNDIDAIASWLDEVLSTPIYHAHSDSNFMLKQLPKANTLREPQFYFPLGDTSIASL 1075

Query: 858  -------PKKDII-----------ISGRIDQISISQQNIFIFEYKT--------HHHVPQ 891
                     ++ +           + G ID I       F+ +YK+         +    
Sbjct: 1076 GKLLQHHRDENTLPNLATDMLEGMMQGFIDLIFEVNGQYFVCDYKSTHLGNGFEGYTPDA 1135

Query: 892  EIEHIPYT-HIAQLSIY 907
             +  I    +  Q  IY
Sbjct: 1136 LLADIQSKQYDLQYLIY 1152


>gi|325266415|ref|ZP_08133092.1| exodeoxyribonuclease V beta subunit [Kingella denitrificans ATCC
            33394]
 gi|324981858|gb|EGC17493.1| exodeoxyribonuclease V beta subunit [Kingella denitrificans ATCC
            33394]
          Length = 1237

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 138/999 (13%), Positives = 281/999 (28%), Gaps = 154/999 (15%)

Query: 13   YELIYKDLWPLPYFQVSDINKY----VSLSMETGNPTILKKAQ--TLQQASQTQCIEERF 66
             E  Y+  W     Q   +       V   +   +    K A    L      +  E   
Sbjct: 245  AEQDYRRAWQHAAAQWPRVQAAFLGEVQPKLNKKSYEPQKYADFCALLAQHAQEGTEPPA 304

Query: 67   SLLSSFFLTQKF--TPQKNIITQEINKKSPDLKEKLK-KSQDEFIKIRDRFNTYKMFKST 123
            S +       K     + + +  +I K    ++ +      ++ +               
Sbjct: 305  STVVQHTFDSKGDNKFRADYLLSKIAKAQQAMQNRETLAFLEDTLGGLAETAQAAEQAEQ 364

Query: 124  LASLTLAKYLNAHY----EEAKKKNCVLDFEDLIINTNDLLKKRD-VSAWIRYKIDQEIN 178
             A + L   L   +    E  K++     F+DL+++    L++    +A +   + ++  
Sbjct: 365  NALIGLTLALLDDWRVQNERGKEQQTTRQFDDLLLDVFHALQENRTHAAALSQAMARQWR 424

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
              LIDE QDT  +Q+++ R             +     F VGD KQ+IYSF GA+     
Sbjct: 425  VALIDEFQDTDPLQYDIFRR-AFAAESDTQKAACTPAWFMVGDPKQAIYSFRGADIF--- 480

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIR 296
                        A +      L  + RS A ++  +  +F+  +      L  +  +  R
Sbjct: 481  -------AYLAAAEKAEHRYTLTTNHRSHARLINSIGALFARDKPFALDHLPYEPVSAGR 533

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN- 355
                      +V+L                            ++     A   A  I+  
Sbjct: 534  KEKRLPEHEPSVRLRWLNDLHECGDTAEA------------ADTLRHRAADWCAREIARS 581

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            +  +     +     ++A  I VLVR  KD  L+    +     Y I  V   R  L   
Sbjct: 582  LHLSAQGQFHIGSLPLEAGQIAVLVRSHKDGGLMQRTLK----KYGIQSVLMSRENLFAQ 637

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
                 + AL  F L  +     V +L   LF ++  D+  +     +     E   +   
Sbjct: 638  EEATAVCALLEFWLKPQKTELLVYVLAGCLFGYTAADVQALLADDAQLAYWTESALQAQQ 697

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                                     +      L       + +++    ++  + + +  
Sbjct: 698  DWQQ------------------WGVYAAMQRFLQQNGVITRLLAQGSERMLTNIGQIMEL 739

Query: 536  TLRNEQNSYSSLQELISELEQY---------PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             L  E     +   L   L Q            +      ++ + V+I+T+H AKGL+ P
Sbjct: 740  -LAAEDEQGRNETALQQWLAQEIAQSTQSGGAESRLLRLESDEHLVKIVTMHAAKGLQYP 798

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            +V+     +         ++      N              +  +     + + ++   E
Sbjct: 799  IVYCPFVWAGGKDSTDEWQVVQRGGEN----------WLLHKTQLEDGDRESMAQAQLSE 848

Query: 647  YNRLLYVGMTRASDQ------------------LIICKHSNTSNEKKSNQRTWYDMVYDS 688
              RLLYV +TR+ +Q                  L+      +  +  S            
Sbjct: 849  DLRLLYVALTRSEEQLNVYMAAGRNTHRSDFYYLLDTPPQESDKKTVSPLAYRQCWQEFI 908

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
               D +     LT+            +T      PL R   +              +  +
Sbjct: 909  ARQDAQNTDFVLTDEPPPPFAAPERTATAEHSGQPLYRAVHLPPRRYAVTRHTSFTALTR 968

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSD---------------NQTFNRGLIIHKLLQVI 793
            N   +   +    +      + E  L                       G+ +H LL+  
Sbjct: 969  NVPRQSDTVAAEELLQPALDSAEQRLLPAASTAQAQERSMANFPAGTGVGVCLHSLLEYF 1028

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-----MTTAMSCDSYSE 848
                    ++  T        +        +   + ++ + P+     +   +     +E
Sbjct: 1029 RFQQAACTQSARTERVLAQYSIDADMWLDTVNDMLDKVRQTPLIGGKALCDFLPEQRLAE 1088

Query: 849  VSVSGKI--------------NCPKKDII--------------ISGRIDQISI-SQQNIF 879
            +     +              +    DI+              ++G ID +       I 
Sbjct: 1089 LDFLFPVQQFDLAALPHWLAESGLDGDIVQAASSLTAQQVSGFLNGAIDLLLWHEPDTIV 1148

Query: 880  IFEYKTHHHVPQEIEHIPY-----THIAQLSIYEKILKD 913
            + +YK++       E +        +  Q  IY      
Sbjct: 1149 VADYKSNRLPDYAPESLTRAIAEHHYYLQALIYAIAAAR 1187


>gi|256844886|ref|ZP_05550344.1| DNA helicase II [Fusobacterium sp. 3_1_36A2]
 gi|256718445|gb|EEU32000.1| DNA helicase II [Fusobacterium sp. 3_1_36A2]
          Length = 919

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 130/876 (14%), Positives = 275/876 (31%), Gaps = 182/876 (20%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            +++   + +     +  +++   +   K     YE+   +N ++DF  L +   ++L  
Sbjct: 160 LRNKINDLNENAIDIESIQTSDNYINFIKSAYKLYEKQLFENNIVDFSYLQVEFLNMLLN 219

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               A    KI+   ++I++DE QD++ IQ +++ S++++           + +  VGDE
Sbjct: 220 N---ADFLEKINNHFDYIMVDEYQDSNKIQEKILLSISKN----------KKNICVVGDE 266

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA  + +L   +   +       +  +I L  ++RS   I+   +K  +  +
Sbjct: 267 DQSIYRFRGASAENILNFSKYFNED------ECKLIVLNENYRSVNHIVEFNNKWINAID 320

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                                       W     + +     + +  TS    +   +  
Sbjct: 321 ----------------------------WHGNRFEKNIVSMRENDYMTSNVFHISGSTLN 352

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
             + R     I  +            ++     I VL            L   LK +  I
Sbjct: 353 ENI-RNTVTFIKKL--------KQNNKITNYNQITVLF-SHFKDRSAKKLEDALKKE-NI 401

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            V      +  +   +K        IL+          L + L      D+ ++  ++  
Sbjct: 402 EVYSPRTKVFFEMYEVKLTFG---VILACFKKYFPEEALDTYL--LECLDLARLEIRKDN 456

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIH---ELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                                 + +I    E I    F S ++ F  +L     +     
Sbjct: 457 --------------------EFLAWIKGKIENISEYSFNSLNEIFYELLSFSYYKNVLKE 496

Query: 520 RFGNEVID--VLDEFLNFTLRNE---QNSYSSLQE--------LISELE----QYPPTIK 562
               E      L          +    +   S+++            LE         I 
Sbjct: 497 ESPIEARANHNLAILSKIFKNFQKYVHSKKISIEDDFSIIKYFFTKYLEILKQSRVDEIF 556

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                 ++ +  +T+H +KGLE PVV +    +       + +   +  L +        
Sbjct: 557 SEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYTTPNVSGDLSRQTSIDRLINSN------ 610

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                  ++ R  YV  +R  + L++  +    +E   N + ++
Sbjct: 611 ------------SKISEIDKEYFDFYRKFYVAFSRTKNLLVLSCYEKGVSE---NFKPFF 655

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             V         + +I L     KDE     ++T                      I   
Sbjct: 656 YSVRGVNSLQFDIDQINLDKVSKKDERKILSYTT---------------------DIALY 694

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT------- 795
            + P+K  +      +                 D + FN G+I HK ++ I         
Sbjct: 695 RYCPMKYFLVREKEYS---------------TFDKKVFNLGIITHKAIEHINKSFLQKQE 739

Query: 796 -LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
              ++  ++ + +          +   + ++ ++ + +++        C    E S   +
Sbjct: 740 IFSDNYIEDLVKNIHKFQNIDLDSN-VERIIDTVKKYIKDE--KDNFKCIKKVEAS---E 793

Query: 855 INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 + I+ G+ID I   +  I I ++KT  +           +  QLS+Y+ +L+  
Sbjct: 794 FRVED-NYILYGQIDLILEDENEIKIIDFKTGKY---NEIEFSSNYRQQLSLYKLLLQKK 849

Query: 915 YPNKSLVCLLIYVSE---PKVFIIPQNKLNKAFAEI 947
           Y +K +   L Y+ E    K   I    L +    I
Sbjct: 850 Y-DKDIKTYLYYLEEDEPKKEIYIDDEDLKEDLENI 884


>gi|294668891|ref|ZP_06733981.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp.
            glycolytica ATCC 29315]
 gi|291309188|gb|EFE50431.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp.
            glycolytica ATCC 29315]
          Length = 1189

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 128/977 (13%), Positives = 265/977 (27%), Gaps = 156/977 (15%)

Query: 45   TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKS--PDLKEKLKK 102
            T   K   L++  Q   +  ++   +      +     + +T  + K    P+       
Sbjct: 254  TYEAKLAELEKLLQQTAMPAKWLETNLGNTNGESVFSADYLTATVKKGHTAPEADLAALS 313

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
               +           +        L   +Y+     E +        +DL+++    L  
Sbjct: 314  FLHKVRTAASALLDAEQQALIALQLDCLQYVRRTAAEQRATRQERSPDDLLLDVYHALTA 373

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                  +   + Q     LIDE QDT  +Q+E+ R             +    LF VGD 
Sbjct: 374  GAHRDKLAEAVSQNWRVALIDEFQDTDPLQYEIFRRTFA---------AHGNPLFLVGDP 424

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQ+IY F GA+    L+         T          L  ++RS + ++  + ++F   E
Sbjct: 425  KQAIYGFRGADIYAYLQAAADTPVHYT----------LAHNYRSHSLLIDNIGRLFQQKE 474

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                L       +                +        + +P +E+              
Sbjct: 475  RPFVLEHIGYPAVTAPRGTSRLTPPQAALKIRWLNDGGEPDPNKETL------------R 522

Query: 343  SILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            S  A   A  I+ +I        N K   ++A  I VLV       +I            
Sbjct: 523  SRAAEYCADEIAALINQAAEGRLNYKNTPVEAGQIAVLVHSHNQGAMIKRTLAE----RG 578

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            I  V  +R  +      K L AL  F L          +L   LF  + + +  +     
Sbjct: 579  IPSVSIERESVFAGEEAKALAALLGFWLEPRRTEPLRFILAGTLFGQTAEQLHALNRDEA 638

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                                        + + I Q    +   T          + ++  
Sbjct: 639  LLSGYIAAA------------------EDFLQIWQRQGIYAALTAFARRYGLEGRLLAAD 680

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ------YPPTIKRAHSANHNEVRIM 575
            G   +    +        E  +  +   L   L                  ++   V+I+
Sbjct: 681  GGRTLTNFWQLAELLAD-ENENSHTPAALHQWLLAKIQDPPQNENAVLRLESDEALVKIV 739

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGL+ P VF   +            +    + ++            + + +    
Sbjct: 740  TIHASKGLQYPFVFCPFSWDTAEKKNEAWHILHRENGSELL----------ADSQLDEAD 789

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
             + L      E  RLLYV +TRA +QL+I     +S  + +       +  D      + 
Sbjct: 790  REQLDDEDLGERLRLLYVALTRAEEQLVIYAARCSSTPRNTFAYLLEGLPSDGRLKTRQA 849

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE-- 753
             + +  N           W    PE    +    +   +  ++     +           
Sbjct: 850  YEAEKENQAEMLRRNWLRWINAAPEGIEWQEGAPLSAAVQTRRRSGTEYRAAVYPPRRFS 909

Query: 754  ---------------------------PYILNPSTIDTKGKTNLESL-------LSDNQT 779
                                          L+P+ +       L              + 
Sbjct: 910  FIRHTSFTGLTRHLGHGPTRPDDDDGLQPALDPAELSAGSLLPLPDTDNAPRDIFHFPRG 969

Query: 780  FNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNA---KLWPAKEYKNLLLSITRLLENP 835
               G+ +H++L+         +++  I +   K+    +   A        ++  L    
Sbjct: 970  AAAGICLHEILEKHDFARPAGQQRENIAAILEKHGIETEWLDAVCLMADQTAVAPLHGGT 1029

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------------ISGR 867
             ++   +    +E+      +  +   +                            ++G 
Sbjct: 1030 TLSALPAARRKAEMGFVMHFDRLELGRLKNHLAAAGLPEACTAAAERLDFPTLQGFLNGF 1089

Query: 868  IDQISISQQN-IFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKDSYPN 917
            ID   +       I +YK++H             +     + +  Q  IY          
Sbjct: 1090 IDLTCLLPDGTACIIDYKSNHLGMDTDGYAQSALDQAVADHHYYLQAWIYALAAARHLKQ 1149

Query: 918  -----KSLVCLLIYVSE 929
                 +++    +++  
Sbjct: 1150 RGQIPRTVRIRYLFLRG 1166


>gi|89099734|ref|ZP_01172607.1| YjcD [Bacillus sp. NRRL B-14911]
 gi|89085481|gb|EAR64609.1| YjcD [Bacillus sp. NRRL B-14911]
          Length = 761

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/648 (15%), Positives = 195/648 (30%), Gaps = 112/648 (17%)

Query: 41  TGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE-K 99
                    A T                 +S  L +K   ++ I+     +   D K+  
Sbjct: 212 KSAQAQQLLAGTFHSIFYRILSFHDREGWNSQKLLKKEWQREQILKGAAKELKIDEKDFA 271

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
              +  +    ++     +  K           L   YEE K+ + + DF+D+++    L
Sbjct: 272 FDLALQKIGFWKNSLILPQDTKPATDWDKTVTELYRLYEEYKEIHRLFDFDDMLLGCYRL 331

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            ++      I        ++ LIDE QD + +Q+E+I+ L+               + AV
Sbjct: 332 FQEHPH---ILESYQNRFHYFLIDEFQDINKVQYELIKMLSA----------KSNNVCAV 378

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIY+F G++P+ +L   +             SI+ L  ++RS  +I++  + +  
Sbjct: 379 GDDDQSIYAFRGSDPRYLLEFDKDFPA--------ASIVVLDQNYRSAHEIVSAANSIIV 430

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             +  +     +  +   +                                   D   + 
Sbjct: 431 KNKQRRDKKMKAQYSKARKPL----------------------------LFFPLDEEEE- 461

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A  I   I   I                 +  +L R       I          
Sbjct: 462 ------ATMIVTDIQEKISQGG----------SPGEFALLFRTHAGMRAIFERLANSSLP 505

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT- 458
           ++I     D     D   ++ L+A  +  L ++   S   +L  P     +  +  +   
Sbjct: 506 FRID---QDAESFYDRYLVRTLLAFLKLALDEDSQESIKNIL--PALFLKQSVLQDLKAE 560

Query: 459 ----QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                R   E + +    FA     K    +  I  +   +   +  D     LG     
Sbjct: 561 SILTDRTLLECLADVKTGFAFQ-EKKLARAVPSIRSIKSKSPAAAI-DMIEKELGFNDFL 618

Query: 515 QQ--FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
           ++         +  D + +        E    +   E    +      +K+  +   N +
Sbjct: 619 KKRGLEGSSMEKGSDDIRDLKVAANNFES--LAEFLEHAEHMRAMNKEMKKPGNIRDNSI 676

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            + T+H +KGLE   V+++        H                                
Sbjct: 677 TLSTIHRSKGLEYKTVYIIGAVDGSIPHDFAL---------------------------- 708

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
            +  ++      EE  RLLYV +TRA ++L I        +K    R 
Sbjct: 709 -EAYRNGDPDPMEEERRLLYVAVTRAQEELFISVPQKRRGKKARTSRF 755


>gi|254672842|emb|CBA07038.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis
            alpha275]
          Length = 1204

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 131/942 (13%), Positives = 270/942 (28%), Gaps = 168/942 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L  YLN    E KK  
Sbjct: 309  ARLKKGKTPDAAVFAELQKLADFGYDLNALEEAEEATIIRLQLDLIGYLNRSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+           AG       L  ++
Sbjct: 425  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQ----------AAGDARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +   ++R              S+   +   
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAE------------SRLSPKRPA 515

Query: 325  QQESWTSYFDSL--PQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVR 381
             Q  W    D+    ++      A   A  I+  +        N K   +Q+ DI VLVR
Sbjct: 516  VQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVR 575

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +++   +      ++  V   R  +        L AL  F L      +   +L
Sbjct: 576  THNEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVL 631

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +F +    +        E     E                   +             
Sbjct: 632  TSGIFGYDAQQLHDFNQNESEILHWAE--------------SARTALDNW----NQYGIF 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPP 559
                          + +SR     +    + L        +  + ++L + + +      
Sbjct: 674  AAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAG 733

Query: 560  TIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        ++ + V+I+T+H +KGL+ P+V+         +     ++    +   
Sbjct: 734  NNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRT 793

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +               +  D  K        E  RLLYV +TRA +QL I    +T+   
Sbjct: 794  ELLAKAQ---------LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSTNTAD 844

Query: 675  KSNQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                     +            +   D      +    +  +      ++       P  
Sbjct: 845  NPLAYLIEGLPQDSRETVRRAYACEKDGIAMLKRNWRRVADNAPSGTNFAFTEDAPPPAA 904

Query: 726  RE---------------------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                                           + +        ++   P  +         
Sbjct: 905  YRGNAGQTAEFTANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAEISVPAM 964

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP 817
            PS  +T   ++  S+ +  +    GL +H++L+          ++  I     K    + 
Sbjct: 965  PS--ETPTASDGISIHNFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYG--FE 1020

Query: 818  AKEYKNLLLSITRLLENP-------------------------------MMTTAMSCDS- 845
                  +        + P                                +    + D  
Sbjct: 1021 EIWLPAVAEMAEACRKTPLTGAYGLSNIPPEYRCPEMGFTLFTENFSLKRLRDWFARDDI 1080

Query: 846  -YSEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------E 892
               EV  + +  ++    +  ++G +D +       I + +YK++H             +
Sbjct: 1081 RLPEVCRAAAETLDFHTVNGFLNGFVDMVCQDPDGNICVIDYKSNHLGTDASAYTQQAMD 1140

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
                 + +  Q  IY       +  +     ++    +++  
Sbjct: 1141 EAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|114326567|ref|YP_743726.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114326628|ref|YP_743786.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114309506|gb|ABI60748.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
 gi|114309567|gb|ABI60808.1| UvrD/REP helicase [Nitrosomonas eutropha C91]
          Length = 971

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 111/917 (12%), Positives = 260/917 (28%), Gaps = 150/917 (16%)

Query: 47  LKKAQTLQQASQTQCIEERFSLL-SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS-- 103
           L+  +  ++ +  +     F      +FL Q     + +   ++          ++    
Sbjct: 102 LRLLEDFREFTWLKRSFTLFDQFDQQYFLYQHIKDFRELPDAQLVMGDDQTGRWMQSENL 161

Query: 104 QDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                K+R+         +     +       A Y+E   ++  LDF  +      LL+K
Sbjct: 162 LKWVNKVREEALDATTLTAAPELEICALATCFAKYQELLHEHNSLDFSGIQYEALRLLEK 221

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +  ++ + + H+++DE QDT+ IQ  ++  L  +           + L  VGD+
Sbjct: 222 ---RPEVLAQLRERLTHLMVDEYQDTNTIQERILLLLAGE----------NKNLCVVGDD 268

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q +Y F GA  + +L    +          +   ++L +++RS  DI+   ++      
Sbjct: 269 DQGLYRFRGATIRNILEFPSLFTDD------QCKQVKLTVNYRSHPDIIRFYNEWMKEQV 322

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                                    V  + + +   +        +      +       
Sbjct: 323 -------------------WDDGTRVFRFAKQIVPCEDDFPEMPTAVRLA--ASNDNGET 361

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
           +     +   ++ +  +  +             +  L R  K+  ++            +
Sbjct: 362 TNWHAEVLAFLNGLKASGKLAD--------WNQVAFLFRSVKNDKVV--ALARFLEAQGV 411

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            V      +  +   I+ ++    F+        ++   +  P++     D +     + 
Sbjct: 412 PVFSPRSNMFFEREEIRLMIGALIFLFPQFPKVRAWAEGVTLPIW-----DYYDHQCFKP 466

Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            T+ + +   K               + +    A     +  F   L +    ++     
Sbjct: 467 FTDELRKPENKPLLDWARPLAKRHAVLAQNTDYAFSGLFYQLFQFPLFSHFLTEEAAQGV 526

Query: 522 GN-EVIDVLDEFLNFTLRNEQNSYSS--------------LQELISELEQYPPTIKRAHS 566
                   L  F     + E   + S                + +  L+          +
Sbjct: 527 DKGRAARNLGTFSKLLTKFEYLHFVSVLNPSFLEKNIRDLFNQFLRFLQDGGIGEYEDEA 586

Query: 567 A--NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  +  +T+H +KGLE PVV      +          + +                
Sbjct: 587 EYAPKGCISFLTIHQSKGLEFPVVVCGSLEAVPRKQYSALDVLLEDGGY----------- 635

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                 +  +  + L      ++ RL Y   +RA + L++         K  ++      
Sbjct: 636 ------LSKERFEPLDHIKNFDFWRLFYTAFSRAQNLLVLAAQEKQGRGKSPSKYFERLF 689

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                  D  +  +        +                L+RE +    +   +   + +
Sbjct: 690 YELPSWRDVDLSALTYEAVKQIN----------------LKREYSFTSHIAVFENCAEQY 733

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL-----PEH 799
              K     P   +P                       G ++H+ ++ I           
Sbjct: 734 RFFKELEFAPIRESP--------------------MLFGTLVHQTIEDIHKTVLRGEEGS 773

Query: 800 KRKNFITSYCTKNAKLWPAKEY--------KNLLLSITRLLENPMMTTAMSCDSYSEVSV 851
              + I  + + N  +   KE         +  LL + R  E          +   E  V
Sbjct: 774 ITLDGIKGWFSANYAMLSKKERVYLAPSSQQAALLHVLRYFERENGNW----NRIKEAEV 829

Query: 852 SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT-HIAQLSIYEKI 910
              I+  K   I+ G +D I      + I ++K+      E +      + +QL +Y  +
Sbjct: 830 E--ISLVKDQYILKGSVDLIRGEHDTVEIIDFKSEKKPDMERDRDRLRQYQSQLEVYAHL 887

Query: 911 LKDSYPNKSLVCLLIYV 927
           ++     K     L Y 
Sbjct: 888 VEKRTGQKVSRMHLYYT 904


>gi|197124367|ref|YP_002136318.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196174216|gb|ACG75189.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 1111

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 138/937 (14%), Positives = 284/937 (30%), Gaps = 65/937 (6%)

Query: 18   KDLWPLPYFQVSDINKYVSLSME-----TGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
                P         ++++  + E     TG+  +    + L++    +        L   
Sbjct: 221  AARRPDLGKFRDLADEFLGYAAESSGDGTGSRWVAATRRRLERIRGEEDPVLVLKELLRC 280

Query: 73   FLTQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
               +K   + +    +              K       +RD              +  A 
Sbjct: 281  APYRKLGMKADFGDDRAGWALYKAFLGDDGKKALREGSLRDDLLRPFARWLARRLVAAAP 340

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             + A YE  K ++  +   D +    +L         +R +     +H+++DE QDT  +
Sbjct: 341  AVVAMYERVKARHRAV---DQLDLLLELRDLLQRDRAVRAEYQALFDHVMVDEFQDTDPL 397

Query: 192  QWEVIRSLTEDFFVGKNTHSS---PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            Q EV+  L E   V  +       P  L  VGD KQSIY F  A+       + I ++  
Sbjct: 398  QAEVVLYLCEQGAVAGDWRDVRLVPGKLTIVGDPKQSIYRFRRADIGVYAAVRAIVER-- 455

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    + +L  SFR    ++  ++  F       G+   +           G V   
Sbjct: 456  ----GPHVVAKLKASFRCEPALVRWLNGTFD------GVLGKAAGDAPVFDPEAGTVANE 505

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
             L         S       +  S      + + A  LA  + + I     T    + G  
Sbjct: 506  PLLAGREGGAPSAVQVLPLAAESGKKPELRATEAKALAAWLRWLIEGKRRTIVDPATGAP 565

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R     D+ VLV    + PL+      L     +        +  +    +  +   R +
Sbjct: 566  RPAGYGDVAVLVTATGNLPLLFPELDRL----GVPYAARGGTLFLEDPLHQQFLLGLRAL 621

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
              ++D ++   +L+ P F    DD+ +                   + G+ + +     +
Sbjct: 622  ADRDDGVAQAALLRPPFFAVDHDDLARARAADP----------ASTHAGVLRARAAQAVV 671

Query: 489  HELIHIAQFCSPHDFFTLILGAK-KGRQQFISRFGNEVIDVLDEF--LNFTLRNEQNSYS 545
             EL       SP      +L     GR   +   G + ++ L E   +   +  E   Y 
Sbjct: 672  RELRRTRLDRSPGATARDLLERTAFGRAAALGPNGAQRLEALRELCLVLDAVAAEGLDYD 731

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            +    +         +        + V+I+TVH AKGLE PVV L D  + + +      
Sbjct: 732  AATARLRAWVDDAVQLDPPRPVGTDAVQILTVHQAKGLEFPVVVLWDGCANLAARDVRAP 791

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +  +        + +   +       ++    K+    E  RL+YV  TRA D L++ 
Sbjct: 792  FVVDRT---GEAWAVALDGLEWEEPEGGEVAGREKRYLDAERLRLVYVAATRARDLLVLP 848

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                             + +     + E    ++           A+      P   P  
Sbjct: 849  VAGEPDP----------EWITGRLVSGEPAAPVETLEPYLIGAEPAWAREHPAPAPRPPT 898

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR--- 782
                +   +          +                +    +   E+     +  +R   
Sbjct: 899  DGSALAAEVRAAWRSASADAARPRFAPASVTGEAHALVEAAERPGEAGAPRPERASRYGR 958

Query: 783  --GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
              G  +H  + +    P       +              E  + +      LE   +  A
Sbjct: 959  VFGDTVHLAIGLALRGPALAPAAAVARAAAATGLSERRAEAADDVARALAALEQAGLRRA 1018

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
                  SE+ +   +       ++ G +D + +    + + ++KT      ++      +
Sbjct: 1019 PG----SELQLEYPVALAGDGKLVQGYVDLLGVRGGRVVVVDFKTDAPPAGDVHASHAAY 1074

Query: 901  IAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFII 935
            + Q+  Y +IL      +   +   L++ ++  +  +
Sbjct: 1075 VEQVRGYARILVGLGVAREGAVDAGLLFTADGGLRWV 1111


>gi|183221122|ref|YP_001839118.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911213|ref|YP_001962768.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775889|gb|ABZ94190.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779544|gb|ABZ97842.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 664

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 109/642 (16%), Positives = 199/642 (30%), Gaps = 121/642 (18%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
           L++ +    ++  F++L            +  ++T     + P  KE L +       ++
Sbjct: 92  LRKYANALSLDSHFTILDEEDTIGFVGMARDQVVTTGTKVRFPK-KETLAEIFSSCFNLQ 150

Query: 112 DRFNTYKMFKSTLASLTLAKYLNA---HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                Y   +     L + K +      + + K K+  LDF+DL+  T  LL   +    
Sbjct: 151 VSLEKYLQKEY-PMFLGITKEIQEIKTKFSDLKLKHNSLDFDDLLDFTRKLLMSDES--- 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           IR ++     +IL+DE QDT+ IQ  +   L           S  + +  VGD+ Q IY 
Sbjct: 207 IRERMSSVYEYILVDEYQDTNRIQAHIACLLA----------SKHQNILVVGDDAQCIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F GA    +L   +I            + I+L  ++RS   IL + + V          +
Sbjct: 257 FRGASVHNMLDFPKIFPN--------TNTIQLTKNYRSVQPILNLANAVLEKSSENYKKN 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S                VQL                              S    A  
Sbjct: 309 LVSAFPKN-----SKNPYLVQL-----------------------------PSLEEEAEW 334

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +  I  +              I   ++ VL R    + L+       K    I      
Sbjct: 335 TSNQILELYEEG----------ITLSEMAVLFRAGFSSHLLEVQLNSKK----IPYRKYG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                D   +KD++A  + I + +D LS+  +L        +     +  +    +  ++
Sbjct: 381 GRRFFDLAHVKDMIAYLKIIENPKDILSWNRILLLED-QIGKKYSILLFKKLESNQFQWK 439

Query: 469 YIQKFANCGISKFQH-VIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
             + F        +   +K +H L  ++    S       IL       +       +  
Sbjct: 440 DDEHFFLGLPETTKDSFLKLMHCLDSVSPVIHSTQQILERILAYYFPLLESNYDDAEKRK 499

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGL 583
             LD  +  + +        L + +S L         I  ++      + + T+H+AKGL
Sbjct: 500 QDLDALVLLSKQ-----EPKLSDYLSNLILNPVEGKEIGTSNEVEDEFLTLSTIHSAKGL 554

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   VF +        H  I+                                       
Sbjct: 555 EWKYVFTLQVVEGNLPHSRIRT-----------------------------------TDE 579

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            EE  RL YV +TRA + L +   +     + +    +   +
Sbjct: 580 LEEERRLFYVAITRAKEALFLTNPAFNDKNRFTPVSRFLSDL 621


>gi|254374748|ref|ZP_04990229.1| hypothetical protein FTDG_00923 [Francisella novicida GA99-3548]
 gi|151572467|gb|EDN38121.1| hypothetical protein FTDG_00923 [Francisella novicida GA99-3548]
          Length = 1216

 Score =  217 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 118/768 (15%), Positives = 234/768 (30%), Gaps = 91/768 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++RD     K  ++          +   + +AK++  VLDF+DLI      +KK    
Sbjct: 272 VKELRDLQQEIKQAQAAQFIRKACLQIRESFAKAKEQKGVLDFDDLITKLCQSVKKSPD- 330

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT-------------------------- 200
             +   + ++    LIDE QDT   Q+E++ ++                           
Sbjct: 331 --LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSHSHEGGNLLTNGLNLKDTRL 388

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            ++    + + S   L  +GD KQ+IY F G +    L+ K    +         +   +
Sbjct: 389 REYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEE--------NRWSM 440

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST +++   +++F   +          T I         V      ++     D 
Sbjct: 441 DTNWRSTGEMIKAYNRLFYKQDYQPEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFDD 500

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              P    +    +   +    + L+      I+ ++ T  +            DI +LV
Sbjct: 501 NFKPINYFYYEVAEDDNKSDIDTNLSLWTVNEITRLLNTQKVAE---------NDIAILV 551

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
              K   +I    +        SV  + R  +      K+++AL   I   E+       
Sbjct: 552 ENGKQAKIIQQALQAKNLS---SVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKRA 608

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           L + L          I        + ++   + A                L         
Sbjct: 609 LSTSL--LGGRADKFISYIDENDVSAWDDEIEKA--------------KSLRQQWHKYGF 652

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPP 559
             F   I+     ++          I  L E +       ++    ++    +L      
Sbjct: 653 MAFIMQIIHENFTQRADSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQLNNTATS 712

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             +    ++ N ++I+T+H +KGLE  VVF+                      +    + 
Sbjct: 713 EGELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDSDLKQTVY 772

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                          + +   K   EE  RL YV +TRA  +  I      + EK    R
Sbjct: 773 KIGKD--------DSVKQQADKEVIEELMRLFYVAVTRAKHRCYIGVAKYNNGEKSPLAR 824

Query: 680 T--------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----- 726
                    W + +     N      +     + +           +P+   L+      
Sbjct: 825 FLGYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNPDYDNLKANYISK 884

Query: 727 -EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
            E    +++   KI K        +                   L    + ++  + G I
Sbjct: 885 LENDSWEMLSFSKISKSKVQNTALEKEIDE--AEDDKTQALDRKLAFRFTASKGADMGNI 942

Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           +H +L+           N +     +  K+  A+++ NL L +   LE
Sbjct: 943 LHNVLEHTDFSLGEIDGNLLQEQMDRY-KVVAAEDFDNLKLWLEECLE 989



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899
            +      E      ++  K   ++ G ID I   +   ++ +YK+++      ++     
Sbjct: 1080 LRDTRLREYDNFTNVSNQKIFGMLHGFIDLIFEYEGKFYVADYKSNYLGDTLEDYNQQAM 1139

Query: 900  --------HIAQLSIYEKIL 911
                    +  Q  IY   L
Sbjct: 1140 QEKNQSSFYDLQYLIYSVAL 1159


>gi|269955587|ref|YP_003325376.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304268|gb|ACZ29818.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
          Length = 1192

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 123/1087 (11%), Positives = 258/1087 (23%), Gaps = 238/1087 (21%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R G+           + W L    V   ++ +                + +       ++
Sbjct: 190  RLGVEPGSRLLG-EANQWQLANQLVESWDEDLGTDRSVSGVVGGVIGLSGELGEHLVDVD 248

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            +  ++L                    +     L       +       +      + +  
Sbjct: 249  DARAML--------------------DAMIERLSALPLGPRQRTRGADNEKLLRSLAERR 288

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                     L A Y   K+    LDF D I    +L +      ++          +L+D
Sbjct: 289  GLL-----DLVAEYRRRKRAADALDFGDQIAFAAELARS---VPYVGEVERARFRVVLLD 340

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDTS  Q E++  L                + AVGD  QSIY + GA    + R    
Sbjct: 341  EYQDTSYAQVELLAGLFG----------GGHAVTAVGDPHQSIYGWRGASASGLARFPER 390

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +      G    +  L  S+R         +    +       +        H      
Sbjct: 391  FR---HADGAPAGVRYLSTSWR---------NDAAVLAAANIASAPLRAELTTHVPPLDL 438

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
            + G                                   ++ +A  +              
Sbjct: 439  RPGA-----------------------------GAGVVSAHVATTLEEEAEAAAEWVAER 469

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                          VL RKR     +    R       + V       L     + D++A
Sbjct: 470  WRPGTHPHGRVTAAVLCRKRSQFAAVEVALR----RRGLPVEVVGLGGLLSTPEVVDVVA 525

Query: 424  L-------------GRFILSQEDDL--SFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            L              R +     +L  + +  L S   + + +D  +    R  ++    
Sbjct: 526  LLEAVHDPSRGDSLLRLLTGPRVNLGAADLHALGSRAADLAREDDPRRAAGRAHSDGDAP 585

Query: 469  YIQK-----------------------------------------FANCGISKFQHVIKY 487
                                                             G ++   +   
Sbjct: 586  AAPDGGSGEADDLAVVEGDVVDHRSLVDALDDLPQPGRAARDGRVLTPAGHTRLAALRSV 645

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFI-------------SRFGNEVIDVLDEFLN 534
            +  L  +  + S  +       A     +                R      + LD F +
Sbjct: 646  LRSLRGLT-YLSLPELVVQAERALGLDVEVATADAVATLVPDAGERVSRRGREHLDAFRD 704

Query: 535  FTLRNEQN-SYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVVF 589
                  Q+   ++L   ++ L       +         + + V+++T H AKGLE  VV 
Sbjct: 705  VAATFAQSADAATLGAFLAWLGVAQKQERGLDLPVREPDPDAVQVITAHAAKGLEWDVVA 764

Query: 590  LVDTGSQVFS------------HKHIKKMHIMPSLNDDPGIPIWIPQS------KSRNNI 631
            +      VF                +  +  +P         +   +       K  + +
Sbjct: 765  VPGLVDGVFPTIAEAANGQRAESAWLTDVAALPYPLRGDDADLPAFRWEAAVDTKELDGL 824

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV------ 685
              +      +    E  RL YV  TRA  +L++  H   ++        +   +      
Sbjct: 825  RGEFRAACGEHALAEERRLAYVAFTRARRELLLTAHWWGTSSTPRRLSPFLVELVEVGLV 884

Query: 686  --YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ----------- 732
                     +        +      W A +          L     +             
Sbjct: 885  TADGWTAAPDAADSNPRDDVEVTASWPAVDDVEVGSPRDVLRATAALVDAAATDRAAHAV 944

Query: 733  ----------------------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                                     +++   ++  P     +    L     +   +   
Sbjct: 945  AADGVLVDAAGHDIVELARILLAERDERSGHEVEMPAHVSASGLVRLATDRDEFALQLRR 1004

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                       RG   H+ ++            F +S       L  A +      +   
Sbjct: 1005 PVPAEPTVHARRGTRFHEWVEQ----------QFASSALFDVDDLPGADDGDLPGDADLD 1054

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN----IFIFEYKTH 886
            +L+   + +  +    + ++V   +  P   I+   R+D +          + + ++KT 
Sbjct: 1055 VLKEKFLVSEWAD--RTPIAVEQDVETPLAGIMTRSRMDAVFADPDGEPGSVVVVDWKTG 1112

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
                            QL++Y          P   +     YV+  +     +       
Sbjct: 1113 RPPTDTAARAARE--VQLAVYRLAWSRWTGLPLDKVSAAFCYVATGETVRPERLATEAEL 1170

Query: 945  AEISTKI 951
              +   +
Sbjct: 1171 EALIRGV 1177


>gi|229084227|ref|ZP_04216510.1| ATP-dependent nuclease subunit A [Bacillus cereus Rock3-44]
 gi|228699027|gb|EEL51729.1| ATP-dependent nuclease subunit A [Bacillus cereus Rock3-44]
          Length = 579

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/563 (13%), Positives = 159/563 (28%), Gaps = 89/563 (15%)

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGN 523
            +     +       K Q     +      A+  S  D    +               G 
Sbjct: 18  FLRGAPLEEEAELHGKLQWFYNLLQGWREFARQQSLSDLIWKVYRETGYYDFVGGLPAGK 77

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVH 578
           +    L    +   + E  S+  L   +  +E+           RA     + VRIMT+H
Sbjct: 78  QRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTIH 137

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE PVVF+   G +  +   +K+  +               + K        + + 
Sbjct: 138 KSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRK 197

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK-------------------KSNQR 679
           +K     E  R+LYV +TRA ++LI+        ++                   ++   
Sbjct: 198 MKMELIAEEMRVLYVALTRAKEKLILIGTVKDKEKEMEKWLDAREHTDWLLPDYVRAGAS 257

Query: 680 TWYDMVYDSFHNDERVKKI-------------------------------KLTNSINKDE 708
            + D +  S +     + +                                      K E
Sbjct: 258 CYLDWIAPSLYRHRDSEMLLELGQGNIPSEIYGYDASWKVEVVDGSTLLAPEPVQEEKQE 317

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK--- 765
            +               +EE   +L  E           K  + E      S   +    
Sbjct: 318 LLEALREKRAVPLESERKEEVDARLTWEYDHKDATAHRAKQSVTEIKRNYQSEDGSDNTF 377

Query: 766 --------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLW 816
                                   RG  +H ++Q +        +          N +L 
Sbjct: 378 IKKLRAPIKTRPRFMEKKGLTYAERGTAVHAVMQHVNLQKPITAEVIQEQIAEMVNKELL 437

Query: 817 PAKEYKNL-LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPK----------KDIII 864
             ++ + + +  I    +  +    ++  S   EV  +  ++  +          + +++
Sbjct: 438 TFEQAEEITIDRIVAFFDTDLGKRVLAAKSVEREVPFTMMLSAEEAYQDWQGQGKESVLV 497

Query: 865 SGRIDQISISQQNIFIFEYKTH----HHVPQEIEHIP---YTHIAQLSIYEKILKDSYPN 917
            G ID +   +  I + ++KT            +  P     +  QLS+Y K L+ S  +
Sbjct: 498 QGVIDCMIEEEDGIVLIDFKTDTIEGRFPGGYDQARPILEDRYKVQLSLYAKALEKSL-H 556

Query: 918 KSLV-CLLIYVSEPKVFIIPQNK 939
             +    L +     +  +   K
Sbjct: 557 HPVKETYLYFFDGGHMLRVEDEK 579


>gi|15615397|ref|NP_243700.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
 gi|10175455|dbj|BAB06553.1| ATP-dependent DNA helicase [Bacillus halodurans C-125]
          Length = 780

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 97/566 (17%), Positives = 177/566 (31%), Gaps = 112/566 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   YE ++      DF+D++I   + L +      +  +  +   ++ +DE QD + +Q
Sbjct: 313 LYEGYERSRISQQWFDFDDMLIGAYETLTQNHE---LLARYQERFRYLFVDEYQDINKVQ 369

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+IR LT+            + +  VGD+ QSIYSF G++P  +   +R  +       
Sbjct: 370 YELIRLLTQ----------KEKNICVVGDDDQSIYSFRGSDPSYIQAFERDYEH------ 413

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RS+  I+     V    +     S  +                     
Sbjct: 414 --AKQIVLKDNYRSSHPIVMCAQNVIHHNKQRIAKSVRAQYDSEKAPL------------ 459

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                               +D   +       A  I   I   I + T           
Sbjct: 460 ----------------LFYPYDEEEE-------ATMILSDIQEKIASGT----------S 486

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN-DRFILTDHLAIKDLMALGRFILSQ 431
                +L R       +            +      +         ++ ++A  R  ++Q
Sbjct: 487 PSAFAILYRTNVSVRAMFERLVA----SNVPFRMEQEGESFYQRSTVRKVLAYLRLSVNQ 542

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           +D  +   +L  P     +D + ++       +                 Q  +K +   
Sbjct: 543 DDPKAMEELL--PALFLKKDTLQELKAITIFHDCSLLDALLHLKNVQPFQQKKLKKLLPY 600

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI------DVLDEFLNFTLRNEQNSYS 545
                  SP    ++I     G   FI + GNE        D L + +            
Sbjct: 601 FQKLPHLSPTQAISMI-EKHMGLTDFIKKRGNEGNVMDRGSDDLKDLIVAANSFAT--IP 657

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +  + +S +      +K+A +     V++MT+H AKGLE   V+L+        H     
Sbjct: 658 TFLDHVSHMIAKHHELKKAPAQE-EAVQLMTIHRAKGLEFQHVYLLSAVEGSLPHD---- 712

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                       D  +       EE  RL+YV MTRA +QL I 
Sbjct: 713 -------------------------YALDAWREGDDRPLEEERRLMYVAMTRAQEQLFIS 747

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHN 691
             S    +     R   +M+ +   +
Sbjct: 748 VPSMRRGKNAQRSRFVREMLRNHRQH 773


>gi|254776976|ref|ZP_05218492.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium subsp.
            avium ATCC 25291]
          Length = 1100

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 141/1068 (13%), Positives = 283/1068 (26%), Gaps = 195/1068 (18%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             +     L          +  + + ++ T +       ++L  A  T         L   
Sbjct: 93   LDGTEDRLAARRQRLRDGLAGFDAATIATTHQFCQLVLRSLGVAGDTAAGVTLLDSLDEL 152

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS--LTLA 130
                          Q+ +      +E L+ ++D       +         + A+  L  A
Sbjct: 153  VAEIVDDLYLAHFGQDHDDPVLHYREALRLARDVVNNPSAQLRPLHPEPGSRAAVSLRFA 212

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              + A  +  K++  VL ++DL+    D L      A  R ++ Q    +++DE QDT  
Sbjct: 213  NDVLAELDTRKRRLGVLGYDDLLTRLADALATEHSPA--RLRMHQRWPIVMVDEFQDTDP 270

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +QW+VI              S   TL  +GD KQ+IY+F G +    LR           
Sbjct: 271  VQWQVIDR----------AFSGRSTLILIGDPKQAIYAFRGGDIVTYLR----------A 310

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            A        L  ++RS + +L  +  V    +        +     HR  R+        
Sbjct: 311  AETAGQKKTLDTNWRSDSALLQRLQVVLRGAQLGDPAIVVNDVAAHHRGHRLSGAPRND- 369

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                +         ++       D L Q   A + A      I  ++     F     + 
Sbjct: 370  -PFRLRVVSRNTLGRRGIANLPIDELRQHIGADLAAD-----IRALLAAGATFDG---KP 420

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++A DI V+V + +D             D  +  V      +    A +D + L      
Sbjct: 421  VRAGDIAVIVERHRDAQACFTAL----CDAGVPAVYTGNSDVFTSQAAEDWLCLLEAFDQ 476

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                        +  F  + + +        +                     + + + E
Sbjct: 477  PHRPGVVRAAAATMFFGETAETLAAGGDALTD--------------------RIAQTLRE 516

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                A+       F        G +    + G   +  L              + +L  L
Sbjct: 517  WAGHARERGVAAIFEAAQLLGMGNRVLGWQGGARHMTDLAHLTQLLGEVAHREHHNLPAL 576

Query: 551  ISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               L +        P   R   ++   V+IMTV  +KGL+ P+V+L           H  
Sbjct: 577  RDWLRRQRDERSGAPERNRRLDSDAAAVQIMTVFVSKGLQYPIVYLPFAF-------HRN 629

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                   L  D      +      +     + +  +K    + +RL YV +TRA  Q++ 
Sbjct: 630  TTDSDVVLFHDEDGTRCLHVGGKDSPDFKTVERLGRKEDASDDSRLTYVALTRAQAQVVA 689

Query: 665  CKH----------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                         S     ++  +    D    +  +DE                I    
Sbjct: 690  WWSPAYHEPNGGLSRLLRGRRPGEPVVPDRCEPAKISDEDALARLREWEAAGGPVIEEAV 749

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN----- 769
                P    +     ++     + I         +         PS + ++ +       
Sbjct: 750  PAPAPPLPGVPVPARLENRHFHRGIDTGWRR--TSYSGLIRQAQPSGVGSEPEAAGLDDE 807

Query: 770  ---------------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                              +         G ++H +LQ                    +  
Sbjct: 808  VGDILLAPATSVGDVASPMADLPAGATFGTLVHAVLQTADPFAPDLAAELTARIREHSVW 867

Query: 815  LWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKK------ 860
               A   +++  ++  + + P+        +      D   E+     +    +      
Sbjct: 868  WPVAATPEDMAAAMVPMHDTPLGPLAGGLTLRRIGLSDRLCELDFELPLAGGDRRSAPPE 927

Query: 861  -------------------------------------DIIISGRIDQISISQQ----NIF 879
                                                    ++G ID +            
Sbjct: 928  VRLADLAPLLRAHLPADDVLACYADRLTDRSLGAESLRGYLTGSIDAVLRIPDGAGHRYL 987

Query: 880  IFEYKTHHHVPQE--------------IEHIPYTHIAQLSIYEKILKDSY--------PN 917
            + +YKT+     +                 +   +  Q  +Y  +L            P+
Sbjct: 988  VVDYKTNRLGDAQHPLTAADYDRPRMVEAMLHSDYPLQALLYSAVLHRFLRWRLAGYDPD 1047

Query: 918  KSLVCLLI-YVSE--------------PKVFIIPQNKLNKAFAEISTK 950
            + L  +L  +V                      P + L  A +++   
Sbjct: 1048 RHLGGILYLFVRGMCGPDTPVRDGHPSGVFDWRPPSSLIAALSDLLDA 1095


>gi|46578573|ref|YP_009381.1| ATP-dependent DNA helicase UvrD [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447984|gb|AAS94640.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311232497|gb|ADP85351.1| UvrD/REP helicase [Desulfovibrio vulgaris RCH1]
          Length = 719

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 102/750 (13%), Positives = 211/750 (28%), Gaps = 142/750 (18%)

Query: 8   SLNESYELIYKDLW-PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + NE  +   + L   +        + +    +   +P  L+                  
Sbjct: 63  AANEMLQRASRLLGYGVQGIAGGTFHAFAYSLLRQYHPARLEGRDLT--IMDGADSVAAI 120

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                     +          +   K+  +   L KS+++ + + +            A 
Sbjct: 121 QHCKDALGIARGD--------KSFPKTQTVLSLLSKSRNKELPLDEVLRREAYHLLVHA- 171

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y E + ++ +LD++DL+     LL++      +   +     +I++DE Q
Sbjct: 172 -DGVSRIGEAYAEYRAEHGLLDYDDLLFEVERLLRE---RPDLLAHLRDRYRYIMVDEYQ 227

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+L+Q  +++ L  +             + AVGD+ QSIY+F GA  + +L   +    
Sbjct: 228 DTNLVQARLVQLLAGE----------GGNVMAVGDDAQSIYAFRGANVQNILSFPQFFP- 276

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     II+L  ++RST  +L + + + +    A      ++              
Sbjct: 277 -------GTRIIKLEENYRSTQPVLDLTNAILAEAPQAYRKHLYTSREDGVLP------- 322

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                        + +  S    A  +   +S ++         
Sbjct: 323 ----------------------------QVVRPLSDLTQASIVVSRVSELL--------- 345

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
             R     +I VL R    +  +      L     I          ++   +KD+MA  R
Sbjct: 346 --RTYPPHEIAVLFRAGFHSYHVEVQLNKL----GIRFRKYGGVRYSEAAHVKDVMAYAR 399

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            +L+  D  +F  +              ++     + +         A     + +  ++
Sbjct: 400 LVLNPLDLPAFQRVAALS-RGVGPKTTLRLYEVARQGDP---AATAHACARYPQLRADLE 455

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
            +  L        P      ++   + R +             L++ +            
Sbjct: 456 LLDRLRKRTPA--PATLLEEVIEHYQPRLEAAYPDDWPRRQQGLEQLVQIASAY------ 507

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             ++L   +             + + V + T+H+AKGLE   V ++D     F  +H   
Sbjct: 508 --RDLDLFISDLSLEDPGTEEEDRDSVVLSTIHSAKGLEWSAVIILDLVEDRFPSRHAVT 565

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ--LI 663
                                             +    EE  RL+YV  TRA ++  L 
Sbjct: 566 ----------------------------------RADDFEEERRLMYVACTRARERLMLF 591

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +        E  +        V +             T  +           T  P   P
Sbjct: 592 VPSSLYQRGEGGNQPAAPSPFVRELPAALYEEWYESYTGGLQ-------RRDTSRPVARP 644

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                       E        SP+      
Sbjct: 645 AVASTFGCAPRPESAPVPGGPSPVAGAAKL 674


>gi|332180280|gb|AEE15968.1| UvrD/REP helicase [Treponema brennaborense DSM 12168]
          Length = 765

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 113/784 (14%), Positives = 225/784 (28%), Gaps = 176/784 (22%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  +  K  + +    V   +       +     +  +A+ L+  +        
Sbjct: 35  GAGSGKTRVITTKIAYLIGEKDVDPYSILAVTFTKKAAAEMASRARHLEPRAAN-TAIRT 93

Query: 66  FSLLSSFFL---TQKFTPQKNIITQEINKKSPDLKEKLKKS-QDEFIKIRDRFNTYKMFK 121
           F    ++FL    Q+     +    + +     L + L    + E  +   + +  K + 
Sbjct: 94  FHSFGAWFLRLHAQEAGLDPSFTVYDEDDMVTLLTKALPALSRQEASRAVHKISLAKDYC 153

Query: 122 STLASLTLAK--------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
            T  S  LA+         +   Y+   K+   +DF DLI+    LLK  +    ++  +
Sbjct: 154 LTPDSPDLAEIDAAENFPDVYRAYQNRLKETGNVDFGDLIMLPVLLLKAHET---VKAHM 210

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            +    I++DE QD+++ Q+E+++ L+               +  VGD+ QSIY F GAE
Sbjct: 211 HRRFRVIMVDEYQDSNVAQFELLQQLSG----------PETYVCVVGDDDQSIYRFRGAE 260

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            K +L  +               II+L  ++RS   IL   + V S      G +  +  
Sbjct: 261 VKNILSFQEHFP--------GTQIIKLERNYRSLEPILDTANDVISHNTGRLGKTLRAER 312

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               +                                       Q+   +  A+ I    
Sbjct: 313 GTGEKPVLAFLN-------------------------------DQDDETAFCAKLI---- 337

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                      +     +   D  +L R    +              KI           
Sbjct: 338 ----------QDAHAVGVPYADWAILYRTNAQSLGFETEF----LHRKIPYTVVGSLKFY 383

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--------TET 465
           +   IKD +A      ++ ++++F  ++  P           I                +
Sbjct: 384 EREEIKDALAFLALTANRRNEVAFRRIVNKPSRGIGSKSQDMIVECARRNARESLTGGGS 443

Query: 466 VYEYIQKFANCGISK----FQHVIKYIHELIHIAQFC----------------------- 498
           + +  ++       K     Q  I  + EL+ +                           
Sbjct: 444 LLDACRESVPGMAKKAKSGLQDFIGIMDELLALIDAEENVSLPLPAERLAAEAAASLGVS 503

Query: 499 -----------------SPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLR 538
                               +F  L+           ++    G +    L E  N    
Sbjct: 504 APDNGTASSAENPQSGKKLSEFIELLNTLSGLLDYHTAQDEIAGTQRAANLQELANSAAL 563

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
               + + L E +  +E    TI+ A   + + V ++T+H  KGLE P V +    S +F
Sbjct: 564 Y-PLNRAGLTEFLDHIEL-DRTIENAGDEDGDAVTLITLHNTKGLEFPRVVITGLESGIF 621

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                +                                             L YVG+TRA
Sbjct: 622 PRTDKQPEEREEERR------------------------------------LFYVGITRA 645

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            D L++          +++       + +   +  ++               A + +  H
Sbjct: 646 RDMLLLTSCRRRRLYGRTDFMEASPFLLEIRRDALQIVGESPATFRRGALNGAADAAESH 705

Query: 719 PENT 722
           P   
Sbjct: 706 PLAD 709


>gi|213622282|ref|ZP_03375065.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 495

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 130/395 (32%), Gaps = 77/395 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 228 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+V + +        G                       L
Sbjct: 273 ---GAQTIRLEQNYRSTSNILSVANALIENNNGRLGKK---------------------L 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 309 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 349

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 350 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 401 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 460

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            ++ I  L         H     ++     R  + 
Sbjct: 461 FMELIDALAQETADMPLHVQTDRVIKDSGLRTMYE 495


>gi|182415966|ref|YP_001821032.1| UvrD/REP helicase [Opitutus terrae PB90-1]
 gi|177843180|gb|ACB77432.1| UvrD/REP helicase [Opitutus terrae PB90-1]
          Length = 668

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 98/617 (15%), Positives = 182/617 (29%), Gaps = 119/617 (19%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
           S   L Q    +  +  ++     P     +        +           + T  +   
Sbjct: 130 SESLLKQAVEHEDKLFFKDKTNPRPGPLFDVLSLARNTQQPLADTVAKNFPQYTEIAHRF 189

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                  Y   K++  V+D++DL+    +LL     +  +         H+L+DE QDT+
Sbjct: 190 -PAFATAYATRKREQNVVDYDDLLEFWLELL---IKAPEVAQYFAHRFRHVLVDEYQDTN 245

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q +++  L                + AVGD+ Q IYS+ GA  + ++           
Sbjct: 246 TLQAQIVDRLAA-----------HHCVMAVGDDAQCIYSWRGANFENIMTF--------P 286

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           +     +I  +  ++RST +IL   + V       +   ++      H            
Sbjct: 287 DRHPGTAIHRIETNYRSTPEILNFANGVLLAQPKGRHFDKELRAARGHAQK--------- 337

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               VV   D +                        A  I   I  ++  +         
Sbjct: 338 --PFVVQAMDDREQ----------------------AEFILKRIRALVEDE--------- 364

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   ++ +L R       +    +   +   +           +   I+DL+AL RF+ 
Sbjct: 365 GVSLNEVAILYRSH----FLALEVQLALSRAGVPYQITSGVKFFERQHIRDLVALLRFVY 420

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----------YEYIQKFANCGI 478
           +  D  ++  +    L    E    KI     +   +            +   K A    
Sbjct: 421 NGADTQAWQRI-AVLLPKIGEKGAQKIYAAAVDHARLTQKNLLDVLNTDDVRSKVAKDAR 479

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +      + E+    Q   P D     +        ++     + +D LDE       
Sbjct: 480 DDWASFCASLSEVAEKMQHARPADAVATAIE--GWYGDYLKGQYADYLDRLDELKALV-G 536

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             Q    +   L   +     T  R        VR+ TVH AKGLE  VVF++      F
Sbjct: 537 FAQRFEETQDFLAQIVLLNSETSDRHVDPEAEAVRLTTVHQAKGLEYDVVFVIGLADGQF 596

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                     ++    EE  RL YV +TRA
Sbjct: 597 PGRRS-----------------------------------IESGDVEEERRLFYVAVTRA 621

Query: 659 SDQLIICKHSNTSNEKK 675
            ++L +      +    
Sbjct: 622 RNELYLSYPKVATRGGP 638


>gi|118465710|ref|YP_883674.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium 104]
 gi|118166997|gb|ABK67894.1| exodeoxyribonuclease V, beta subunit [Mycobacterium avium 104]
          Length = 1100

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 141/1068 (13%), Positives = 283/1068 (26%), Gaps = 195/1068 (18%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             +     L          +  + + ++ T +       ++L  A  T         L   
Sbjct: 93   LDGTEDRLAARRQRLRDGLAGFDAATIATTHQFCQLVLRSLGVAGDTAAGVTLLDSLDEL 152

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS--LTLA 130
                          Q+ +      +E L+ ++D       +         + A+  L  A
Sbjct: 153  VAEIVDDLYLAHFGQDHDDPVLHYREALRLARDVVNNPSAQLRPLHPEPGSRAAVSLRFA 212

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              + A  +  K++  VL ++DL+    D L      A  R ++ Q    +++DE QDT  
Sbjct: 213  NDVLAELDTRKRRLGVLGYDDLLTRLADALATEHSPA--RLRMHQRWPIVMVDEFQDTDP 270

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +QW+VI              S   TL  +GD KQ+IY+F G +    LR           
Sbjct: 271  VQWQVIDR----------AFSGRSTLILIGDPKQAIYAFRGGDIVTYLR----------A 310

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            A        L  ++RS + +L  +  V    +        +     HR  R+        
Sbjct: 311  AETAGQKKTLDTNWRSDSALLQRLQVVLRGAQLGDPAIVVNDVAAHHRGHRLSGAPRND- 369

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                +         ++       D L Q   A + A      I  ++     F     + 
Sbjct: 370  -PFRLRVVSRNTLGRRGIANLPIDELRQHIGADLAAD-----IRALLAAGATFDG---KP 420

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++A DI V+V + +D             D  +  V      +    A +D + L      
Sbjct: 421  VRAGDIAVIVERHRDAQACFTAL----CDAGVPAVYTGNSDVFTSQAAEDWLCLLEAFDQ 476

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                        +  F  + + +        +                     + + + E
Sbjct: 477  PHRPGVVRAAAATMFFGETAETLAAGGDALTD--------------------RIAQTLRE 516

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                A+       F        G +    + G   +  L              + +L  L
Sbjct: 517  WAGHARERGVAAIFEAAQLLGMGNRVLGWQGGARHMTDLAHLTQLLGEVAHCEHHNLPAL 576

Query: 551  ISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               L +        P   R   ++   V+IMTV  +KGL+ P+V+L           H  
Sbjct: 577  RDWLRRQRDERSGAPERNRRLDSDAAAVQIMTVFVSKGLQYPIVYLPFAF-------HRN 629

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                   L  D      +      +     + +  +K    + +RL YV +TRA  Q++ 
Sbjct: 630  TTDSDVVLFHDEDGTRCLHVGGKDSPDFKTVERLGRKEDASDDSRLTYVALTRAQAQVVA 689

Query: 665  CKH----------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                         S     ++  +    D    +  +DE                I    
Sbjct: 690  WWSPAYHEPNGGLSRLLRGRRPGEPVVPDRCEPAKISDEDALARLREWEAAGGPVIEEAV 749

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN----- 769
                P    +     ++     + I         +         PS + ++ +       
Sbjct: 750  PAPAPPLPGVPVPARLENRHFHRGIDTGWRR--TSYSGLIRQAQPSGVGSEPEAAGLDDE 807

Query: 770  ---------------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                              +         G ++H +LQ                    +  
Sbjct: 808  VGDILLAPATSVGDVASPMADLPAGATFGTLVHAVLQTADPFAPDLAAELTARIREHSVW 867

Query: 815  LWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKK------ 860
               A   +++  ++  + + P+        +      D   E+     +    +      
Sbjct: 868  WPVAATPEDMAAAMVPMHDTPLGPLAGGLTLRRIGLSDRLCELDFELPLAGGDRRSAPPE 927

Query: 861  -------------------------------------DIIISGRIDQISISQQ----NIF 879
                                                    ++G ID +            
Sbjct: 928  VRLADLAPLLRAHLPADDVLACYADRLTDRSLGAESLRGYLTGSIDAVLRIPDGAGHRYL 987

Query: 880  IFEYKTHHHVPQE--------------IEHIPYTHIAQLSIYEKILKDSY--------PN 917
            + +YKT+     +                 +   +  Q  +Y  +L            P+
Sbjct: 988  VVDYKTNRLGDAQHPLTAADYDRPRMVEAMLHSDYPLQALLYSAVLHRFLRWRLAGYDPD 1047

Query: 918  KSLVCLLI-YVSE--------------PKVFIIPQNKLNKAFAEISTK 950
            + L  +L  +V                      P + L  A +++   
Sbjct: 1048 RHLGGILYLFVRGMCGPDTPVRDGHPSGVFDWRPPSSLIAALSDLLDA 1095


>gi|305432274|ref|ZP_07401437.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli
           JV20]
 gi|304444622|gb|EFM37272.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli
           JV20]
          Length = 920

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 139/855 (16%), Positives = 259/855 (30%), Gaps = 181/855 (21%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +  ++  D   K  + +  FIK  D +            + L  + +   +  +K    
Sbjct: 241 PKYLQELEDSDAKFSQKRKAFIKALDAYAKELEEYKIANLMNLLSHFSKAKDIIQKDKNT 300

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           L F D+     DL++  D    I +++D  I+H+LIDE QDTS++Q++++R L  +   G
Sbjct: 301 LSFSDISRRVLDLIR-SDFKDMIYFRLDGYISHLLIDEFQDTSVVQYQILRPLIAELVSG 359

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           +      RT F VGD+KQSIY F   + +     +   ++   +        +L +++RS
Sbjct: 360 EGVK-KNRTFFYVGDKKQSIYRFRKGKKELFDLLQTEFKQIQKD--------QLTINYRS 410

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              ++  V+K F                    S    + G V++ E   ++ D     + 
Sbjct: 411 KQILVDFVNKTFQ---------SKIKDYTPQLSLESKKGGFVRVIESQETKVDKDQAKEI 461

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           +                        T+  ++         K + I   DI +L  K  D 
Sbjct: 462 QD----------------------KTLEALLEQ---LKFLKSKNIIYDDICILCWKNNDA 496

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            +I            I        +L +   ++ L+   ++                 +F
Sbjct: 497 DMILDFLHE----QDIPAFTQSNILLENKACVRVLLEYAKYC----------------IF 536

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                D F +   +      +E ++   +   S  Q+V+  I EL       +   F   
Sbjct: 537 G----DKFYLHFLKEMLG--FEPLKLKLDLAKSAVQNVLYLIKELKLDLNDMALIQFVEY 590

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +                        E  +   + E                 
Sbjct: 591 AKSKDDFLKLL---------------------FEPCTLKIMSEQNR-------------- 615

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                + IMTVH +KGLE   V L+D+ S+   +     +                 +  
Sbjct: 616 ----GINIMTVHKSKGLEFDHVILLDSLSKNNPNNKTIMLEY-DIDQGWELHIKDSYRKA 670

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           ++ +     I  + K+  E+    LYV  TRA D LII K + +             +  
Sbjct: 671 TQESEYKAFIDKITKADYEDDINKLYVAFTRAKDNLIIIKRNASFQSGNYPSYLNTMLDI 730

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
           +     E   +   T+   K+ + A       P      +E T                 
Sbjct: 731 EIQELGEIEIQTNDTHLPQKESFQALMEFEKIPLQDIERKENTSSDE------------- 777

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                               G   H  +Q +             
Sbjct: 778 ---------------------------------IYFGNAFHFFMQNLKLPQGENFDILCQ 804

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-CDSYSEVSVSGKINCPKKDIIIS 865
               K        +++ L   I  LL N      +       E ++S             
Sbjct: 805 KVSGKFRHFLNHDDFERLFKRIKNLLANAQFQKLIENKKLLKEQALS-----------FQ 853

Query: 866 GRI---DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
           G I   D +++ +    I +YKT              H  Q+ +Y++ ++     KS   
Sbjct: 854 GEIKQLDLLALGEDEAIIIDYKTG--------LNFNKHKEQVLLYKEAIEKILAKKSTQA 905

Query: 923 LLIYV--SEPKVFII 935
            L+YV   + ++  I
Sbjct: 906 FLVYVLEDKVEIIEI 920


>gi|226326730|ref|ZP_03802248.1| hypothetical protein PROPEN_00588 [Proteus penneri ATCC 35198]
 gi|225204951|gb|EEG87305.1| hypothetical protein PROPEN_00588 [Proteus penneri ATCC 35198]
          Length = 519

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 159/475 (33%), Gaps = 83/475 (17%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S F  Q  +     +T ++ ++  DL  +LK     +               +    T A
Sbjct: 112 SLFDDQDQSALLKELTADLLEEDKDLLSQLKSQISNWKNDMLTPEQAIGMARSQQDHTFA 171

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           +     YE+  +   VLDF+DLI     LL+  +    +R +  + I ++L+DE QDT+ 
Sbjct: 172 ECF-RRYEQHLRSCNVLDFDDLISRPTLLLRTNEE---VRERWQRRIRYLLVDEYQDTNT 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L  +                VGD+ QSIYS+ GA P+ ++  ++   +    
Sbjct: 228 SQYELVKWLVGE----------RARFTVVGDDDQSIYSWRGARPQNLVLLQKDFPQ---- 273

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++I+L  ++RS+  IL   + +     +       S                   
Sbjct: 274 ----LNVIKLEQNYRSSGRILKSANILIENNPHVFEKRLFS------------------- 310

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                           E        +   ++    A R+A           + ++     
Sbjct: 311 ----------------ELGYGDELRVLTANNEEHEAERVA---------GELIAHHFINK 345

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              KD  +L R    + +            +I    +          IKD++A  R I++
Sbjct: 346 TNYKDYAILYRGNHQSRIFEKYL----MQNRIPYRISGETSFFSREEIKDILAYLRVIVN 401

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCG------ISKFQH 483
            +DD +F+ ++  P        I K+    +   +++Y                ++    
Sbjct: 402 PDDDAAFLRIVNKPRREIGPMTIQKLGEWAKVRDKSLYNACFDLGLSQTLTGRGLNSLHA 461

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFL 533
             +++  ++  ++          +L               ++     +  +++  
Sbjct: 462 FSQWMSRIVQKSEREPLLA-VRDLLHEMDYESWLYETSSSAKAAEMRMKNINQLF 515


>gi|115314538|ref|YP_763261.1| exodeoxyribonuclease V [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156502071|ref|YP_001428136.1| exodeoxyribonuclease V, subunit beta [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954227|ref|ZP_06558848.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312347|ref|ZP_06803132.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|115129437|gb|ABI82624.1| exodeoxyribonuclease V [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156252674|gb|ABU61180.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 1217

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 119/767 (15%), Positives = 233/767 (30%), Gaps = 88/767 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++RD     K  ++          +   + +AK +  VLDF+DLI      +KK    
Sbjct: 272 VKELRDLQQEIKQAQAAQFIRKACLQIRQDFAKAKDQKGVLDFDDLITKLCQSVKKSPE- 330

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT-------------------------- 200
             +   + ++    LIDE QDT   Q+E++ ++                           
Sbjct: 331 --LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSSHSHKGKNLLTNGLNLKDTR 388

Query: 201 -EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             ++    + + S   L  +GD KQ+IY F G +    L+ K    +         +   
Sbjct: 389 LREYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEE--------NQWS 440

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           +  ++RST +++   +++F   +          T I         V      ++     D
Sbjct: 441 MDTNWRSTGEMIKAYNRLFYKQDYQSEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFD 500

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
               P    +    +   +    + LA      I+ ++ T  +            DI +L
Sbjct: 501 DNFKPINYFYYEVAEDDNKSDIDTNLALWTVNEITRLLNTQKVAE---------NDIAIL 551

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           V   K   +I    +        SV  + R  +      K+++AL   I   E+      
Sbjct: 552 VENGKQAKIIQQALQAKNLS---SVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKR 608

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            L + L          I        + ++   + A                L        
Sbjct: 609 ALSTSL--LGGRADKFISYIDENDVSAWDDEIEKA--------------KSLRQQWHKYG 652

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYP 558
              F   I+     ++          I  L E +       ++    ++    +L     
Sbjct: 653 FMAFIMQIIHENFTQKADSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQLNNTAT 712

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              +    ++ N ++I+T+H +KGLE  VVF+                      +    +
Sbjct: 713 SEGELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDGDLKQTV 772

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                           + +   K   EE  RL YV +TRA  +  I      ++EK    
Sbjct: 773 YKI--------GKDDSVKQQADKEVIEELMRLFYVAVTRAEHRCYIGVAKYNNSEKSPLA 824

Query: 679 RT-----WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           R        D +              L  +I      + +  +   +N+  +  +     
Sbjct: 825 RFLGYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDTLKANYIS 884

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------KTNLESLLSDNQTFNRGLII 786
             E    + L     +            ID             L    + ++  + G I+
Sbjct: 885 KLENDSWEMLSFSKISKSKVQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNIL 944

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           H +L+           N +     +  K+  A+++ NL L +   LE
Sbjct: 945 HNVLEHTDFSLGEIDGNLLQEQMDRY-KVVAAEDFDNLKLWLEECLE 990



 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899
            +      E      ++  K   ++ G ID I   +   ++ +YK+++      ++     
Sbjct: 1081 LRDTRLREYGNLTNVSNQKIFGMLHGFIDLIFEYEGKFYVADYKSNYLGDTLEDYNQQAM 1140

Query: 900  --------HIAQLSIYEKIL 911
                    +  Q  IY   L
Sbjct: 1141 QEKNQSSFYDLQYLIYSVAL 1160


>gi|297588277|ref|ZP_06946920.1| UvrD/REP helicase subfamily [Finegoldia magna ATCC 53516]
 gi|297573650|gb|EFH92371.1| UvrD/REP helicase subfamily [Finegoldia magna ATCC 53516]
          Length = 967

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 143/877 (16%), Positives = 284/877 (32%), Gaps = 152/877 (17%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           S L  F    K   +    T+ + +   +L E  K++  E I   ++     +       
Sbjct: 211 SRLYKFLHDDKQNLEITEYTRFLLESFENLGESKKENVQEIIDEINKRVDAILSNKEKQY 270

Query: 127 LTLAKYLN-------AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           + L +            Y   K +   LDF D+ I     L   +    I     ++  +
Sbjct: 271 VDLYEGFFDILIEISREYSIKKNEKSFLDFNDIEIMCKKALGNEN----ILKSCKEKYKY 326

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +IDE QDTS +Q ++   L  D             LF VGD KQ+IYSF GA  K   +
Sbjct: 327 FMIDEYQDTSNLQRDIFYMLCSD-----KEDLDRNNLFVVGDPKQAIYSFRGANIKVFEK 381

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +   +K           I    + R+  +I+  ++ ++S     +  S  +   I    
Sbjct: 382 TREDIRK------SGGKDITFYENHRTHPNIMEPINYIYSNKMKDRYDSLVAVNEI---- 431

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                    + E   +  D+  ++ S  IL   I          
Sbjct: 432 --------------------GDVIGRDEFKLNNKDAKTKDDSTDILVSCINE-------- 463

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                         KD  +L R + D            N+  I     D+  L +   I 
Sbjct: 464 -----------NNFKDTAILARTKNDFSEYEKSL----NNRNIPYYIFDKQGLEECREIL 508

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           +L+   ++    +D++S V +L                        VY+           
Sbjct: 509 NLIQFIKYAR-YDDEISKVGIL----------------------SNVYDVDYNEILNQTE 545

Query: 480 KFQHVIKYIH-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
           K+Q ++K I  +     +  + +  +  I    +           +    + +FL    +
Sbjct: 546 KYQSIMKIIDKQAEEFTENLTKYTIYDSISNYIEQIDYLGLFSELQAKANVIKFLEIAKQ 605

Query: 539 NEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            + N+Y ++++ +   E             + + V++MT+H +KGL    V + +     
Sbjct: 606 FDSNNY-NIEDFVDYFENNTNLYQMSFEDEHSDLVKLMTIHKSKGLGFDKVIVDNLSKPS 664

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
            +      +  + + N      +  P SK R   +  + K +++    E + + Y   TR
Sbjct: 665 INKDKF--LLFIDNENIQMQFVLDFPFSKFR---MKKVKKLIEEEEDYEVDNVYYTAFTR 719

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +L       +           +  +     + ++   I+      K   I     T 
Sbjct: 720 AKKELSFSNSKKSG---------HFKQISPYIEDLQQRGSIRFLELNEKPFIIE----TL 766

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
             +   +E ++   + +    I   L S   N+      L  S+I+              
Sbjct: 767 DTKFDKIEPKKVEIKKLTPIGITSILNS---NEEVFDSNLQQSSIN-------------- 809

Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
                G ++H   ++   +     K     +  K+ K       KN    IT        
Sbjct: 810 -YILLGNLVHMYAKLSDGVNSPCIKEV--DFLNKDEKKIFNVATKNFNQLITDFSN---- 862

Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                             N   ++++ISG +D++    + I +++YK      Q  E++ 
Sbjct: 863 -----------YKNEMDFNLLYENLMISGFMDRVEFCDEEIKVYDYK---ISSQSQEYLY 908

Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
             +  QL  Y  +L   Y NK++  +L+ + +  +  
Sbjct: 909 EKYHMQLKFYSYVLNKKY-NKNIKMVLVNLRKGYIIE 944


>gi|150016221|ref|YP_001308475.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
 gi|149902686|gb|ABR33519.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
          Length = 671

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 102/554 (18%), Positives = 185/554 (33%), Gaps = 120/554 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + +     YEE KK++   DF+DL I   +LLK       +     +   ++L+DE QD
Sbjct: 154 EIFEEALEKYEEYKKEHNKRDFDDLAIEVLELLKND---KNMLLSYRKLFKYVLVDEFQD 210

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
              +Q + +R +                LFAVGDE Q IYSF G++P+ ++   +I    
Sbjct: 211 CDEMQIDFLRLI---------NDGEDNNLFAVGDEDQCIYSFRGSKPEYMVNFDKIF--- 258

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                       L +++RS  +I+     V +  E                         
Sbjct: 259 -----IGGKKYYLSINYRSRMNIVDKSKTVIAYNEKRNNK-------------------- 293

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       ++       W + ++   Q  S +                  I  N K
Sbjct: 294 --------EIKWNKECEGIVKWFNPYNEKMQAESLTD-----------------IVINNK 328

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGR 426
              I  +D  VL R   ++  +  +        KI     DR     +H   +DL++  R
Sbjct: 329 TLGINYEDNAVLYRTNIESMSVIDVL----TKRKIPFTLLDREYNFFEHFICRDLISYLR 384

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             + + D  SF+ ++  P    S+ ++F I     E       I K       K +  + 
Sbjct: 385 LSVDEFDRNSFLQIINRPFRYISKGNLFYIKNYDREESPFTIIISKEDTPPFQKKK--LD 442

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFI------SRFGNEVIDVLDEFLNFTLRNE 540
            + + I+     S       I+     R          ++   ++ D+++EF        
Sbjct: 443 ELRKDINYLNKISLSSAIAYIVMDLGYRDYLQKYANKFNQSFEDLEDIIEEFKLSAEGY- 501

Query: 541 QNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                ++ E +  +E+   +I+ +        V + T+H  KG+E   V++++   +   
Sbjct: 502 ----KTIFEFLEHIEEVKQSIEESKRKTKREGVILSTIHGVKGMEFKNVYVINCVEETIP 557

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H    K                                       EE  RL YVG+TRA 
Sbjct: 558 HASSIK------------------------------------ENIEEERRLFYVGITRAI 581

Query: 660 DQLIICKHSNTSNE 673
           D L +    +   +
Sbjct: 582 DNLYLFSPRSRKGQ 595


>gi|254570639|ref|XP_002492429.1| DNA helicase and DNA-dependent ATPase [Pichia pastoris GS115]
 gi|238032227|emb|CAY70223.1| DNA helicase and DNA-dependent ATPase [Pichia pastoris GS115]
 gi|328353556|emb|CCA39954.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Pichia pastoris
           CBS 7435]
          Length = 802

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 106/634 (16%), Positives = 202/634 (31%), Gaps = 134/634 (21%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
           +I  ++  +        LKK++ +  K++    T + + +T A       + + Y+E+ +
Sbjct: 150 DIYQKDPKETDKLHGYDLKKAKSQISKLKSLTTTPQTYSTTSARSFDLAVIYSLYQESLR 209

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           K+ ++DF+D ++ T  LL +      +  K    + H+L+DE QDT+ IQ E++  L   
Sbjct: 210 KHNLIDFDDCLLYTYLLLSETRKKGRVLLKE---LKHVLVDEFQDTNKIQMELLYLL--- 263

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                +  +    +  VGD  QSIY F  A            Q            I L  
Sbjct: 264 -GQCTDDQNFEDNVTVVGDSDQSIYMFRNAVASNFENMIIHYQN--------CQEITLKE 314

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RST++IL   +++ +  ++ +  S  S                               
Sbjct: 315 NYRSTSNILNFSEQIMTQQKDRKQKSLRSQ------------------------------ 344

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNM-IGTDTIFSNGKKRVIQAKDILVLVR 381
                S  +      +  +    A  IA  ++ + + +  +            DI +L+R
Sbjct: 345 ----ISHLNIPIVYVRTQNTFKEADHIASEVAKLGLMSGLLT--------SYNDIAILLR 392

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               + +I           +I           +   I+  M   R I++  D+L+ +  L
Sbjct: 393 SSFQSRVIEQSL----VTNRIPYEVVHGRAFWELKEIRVAMDYLRAIVNNSDNLAILRTL 448

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS----------KFQHVIKYIHEL 491
             P        + ++     +++       + A                 +  I  + E 
Sbjct: 449 NFPPRGVGNKTLQRLEELIDKSDCPVIETLEMAIHDKKNGFLNVKSESGVRQYIDILKEC 508

Query: 492 IHIAQFCSP---------HDFFTLILGAKKGRQQFISRFGNE--------VIDVLDEFLN 534
             +    S           D    +   K+ ++   +  G          V + L+EF  
Sbjct: 509 GRLLDSTSLDCEASLEACFDQIVQLANLKEIKKTPETSKGTHDSENALKAVEENLNEFKR 568

Query: 535 FTLRN----------EQNSYS--SLQELISELEQYPPTIKRAHSANHN----EVRIMTVH 578
             +            E       +   L S L+         +    +     V I T+H
Sbjct: 569 QLIEYKPIIDQIITAEAGDTPLTTRDVLSSFLDSIDLYETSNNENKKDSKKGRVTISTIH 628

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGLE PVVF+      V   K   +     S                           
Sbjct: 629 GAKGLEWPVVFIPGCTDGVIPSKWTLEDDGPDSS-------------------------- 662

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
              +  +E  R  YV +TRA   L +  +   S 
Sbjct: 663 ---TNLDEDRRCFYVALTRAKSMLYLSSYKERST 693


>gi|7262775|gb|AAF43958.1|U07832_2 helicase I [Pseudomonas aeruginosa]
          Length = 498

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/437 (14%), Positives = 142/437 (32%), Gaps = 81/437 (18%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +    ++K  +   +++ I   +     +  K        A  +  HY+   +    +DF
Sbjct: 129 DDGVDEIKNYIGAWKNDLILPEEALEKARNPKE-----QTAAIVYLHYQRTLRAYNAVDF 183

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +DLI+    L ++      +  K   ++ ++L+DE QDT+  Q+ +++ L +D       
Sbjct: 184 DDLILQPVKLFQEHPD---VLQKWQNKVRYMLVDEYQDTNASQYLLVKLLVKD------- 233

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                    VGD+ QSIY++ GA P+ +++ K               ++ L  ++RST+ 
Sbjct: 234 ---RAQFTVVGDDDQSIYAWRGARPENLMQLKEDFP--------SLKVVMLEQNYRSTSR 282

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + + +   +       S           G    V                     
Sbjct: 283 ILKCANVLIANNPHVFEKQLWSEMG-------HGDPIRVIRCR----------------- 318

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                      +    A RIA  I  +           +      +  +L R      L+
Sbjct: 319 -----------NEDAEAERIAMEILTLH---------LRTERPYSEFAILYRGNHQAKLM 358

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     ++I    +          +KDLM+  R +++ +DD +F+ ++  P     
Sbjct: 359 ELKLQ----HHQIPYRLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVINVPRREIG 414

Query: 450 EDDIFKI-CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              + K+         ++Y    +        +    + Q   +++  +        P  
Sbjct: 415 SATLEKLGNYATQRKISMYAACDEMVLTEHLDSRFHERLQRFKRWMDGIRRQCAENEPIA 474

Query: 503 FFTLILGAKKGRQQFIS 519
               ++           
Sbjct: 475 VLRSMVMDIDYENWLRQ 491


>gi|89256059|ref|YP_513421.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009877|ref|ZP_02274808.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89143890|emb|CAJ79108.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica LVS]
          Length = 1217

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 119/767 (15%), Positives = 233/767 (30%), Gaps = 88/767 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++RD     K  ++          +   + +AK +  VLDF+DLI      +KK    
Sbjct: 272 VKELRDLQQEIKQAQAAQFIRKACLQIRQDFAKAKDQKGVLDFDDLITKLCQSVKKSPE- 330

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT-------------------------- 200
             +   + ++    LIDE QDT   Q+E++ ++                           
Sbjct: 331 --LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSSHSHKGKNLLTNGLNLKDTR 388

Query: 201 -EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             ++    + + S   L  +GD KQ+IY F G +    L+ K    +         +   
Sbjct: 389 LREYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEE--------NQWS 440

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           +  ++RST +++   +++F   +          T I         V      ++     D
Sbjct: 441 MDTNWRSTGEMIKAYNRLFYKQDYQSEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFD 500

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
               P    +    +   +    + LA      I+ ++ T  +            DI +L
Sbjct: 501 DNFKPINYFYYEVAEDDNKSDIDTNLALWTVNEITRLLNTQKVAE---------NDIAIL 551

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           V   K   +I    +        SV  + R  +      K+++AL   I   E+      
Sbjct: 552 VENGKQAKIIQQALQAKNLS---SVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKR 608

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            L + L          I        + ++   + A                L        
Sbjct: 609 ALSTSL--LGGRADKFISYIDENDVSAWDDEIEKA--------------KSLRQQWHKYG 652

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYP 558
              F   I+     ++          I  L E +       ++    ++    +L     
Sbjct: 653 FMAFIMQIIHENFTQKADSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQLNNTAT 712

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              +    ++ N ++I+T+H +KGLE  VVF+                      +    +
Sbjct: 713 SEGELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDGDLKQTV 772

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                           + +   K   EE  RL YV +TRA  +  I      ++EK    
Sbjct: 773 YKIGKD--------DSVKQQADKEVIEELMRLFYVAVTRAEHRCYIGVAKYNNSEKSPLA 824

Query: 679 RT-----WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           R        D +              L  +I      + +  +   +N+  +  +     
Sbjct: 825 RFLGYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDTLKANYIS 884

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------KTNLESLLSDNQTFNRGLII 786
             E    + L     +            ID             L    + ++  + G I+
Sbjct: 885 KLENDSWEMLSFSKISKSKVQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNIL 944

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           H +L+           N +     +  K+  A+++ NL L +   LE
Sbjct: 945 HNVLEHTDFSLGEIDGNLLQEQMDRY-KVVAAEDFDNLKLWLEECLE 990



 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899
            +      E      ++  K   ++ G ID I   +   ++ +YK+++      ++     
Sbjct: 1081 LRDTRLREYGNLTNVSNQKIFGMLHGFIDLIFEYEGKFYVADYKSNYLGDTLEDYNQQAM 1140

Query: 900  --------HIAQLSIYEKIL 911
                    +  Q  IY   L
Sbjct: 1141 QEKNQSSFYDLQYLIYSVAL 1160


>gi|325105548|ref|YP_004275202.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
 gi|324974396|gb|ADY53380.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
          Length = 1072

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 142/895 (15%), Positives = 290/895 (32%), Gaps = 115/895 (12%)

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            E+ F   S  F        +           P++   L+K +  F      +  ++ F  
Sbjct: 271  EKDFKDYSKLFELVDIPEDEWFQKNAPTDSYPEVNALLEKLKKHFADYYSDYILHQQFNK 330

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEI 177
             +  L L   L    ++ ++++  L    LI +  +LL        D  ++I  KI  + 
Sbjct: 331  NVYFLRLMVELVGLLKDYREESGNL----LISDAQNLLTGITDDAGDNPSFIWEKIGNKY 386

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK-R 236
             + L DE QDTS+ QW   RSL ++     +          VGD KQSIY +   +    
Sbjct: 387  RNFLFDEFQDTSVSQWGSFRSLVQNAIAEPSGELIDN--LIVGDTKQSIYRWRNGDWNIL 444

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV-------FSIPENAQGLSE 289
                K+   +             L  ++RS+ +I+   +++            N +    
Sbjct: 445  HSGVKKDLGEHYVEDD------NLEENYRSSTEIIRFNNELYHKLPGLIQHKINTEVSDV 498

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            +             Q    +++ Q   +               F    ++      A   
Sbjct: 499  EDENLNSWWLGNDYQEVIEKIYSQSAQKITPFTPEGGVVKVKRFVKKEEQEGIFSEAVFR 558

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
             Y ++ ++    I      +  Q KDI VLVR  K+   +           +I VV  + 
Sbjct: 559  EYALAYLVDE--IIELKANQAYQYKDISVLVRSNKEAVAVVDAL----MQAQIPVVSGEA 612

Query: 410  FILTDHLAIKDLMALGRFIL----SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             ++ ++ AIK ++     ++    +     +    L   +          +  +    E 
Sbjct: 613  LLIGNNTAIKLIINTLCALVGYEENTSLYKANCIALYHKISGQPVHPNSYLGLRFKSLEQ 672

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +   + K      + +                    +    I+      + +        
Sbjct: 673  LGHLLPKELCEQANLWIQF--------------PLPELVEKII------RAYDLDKKESY 712

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            +  L  F +      +     +   ++  ++   +         N V+++T+H +KGL  
Sbjct: 713  LPYLLAFRDIVGNATRQGEKGIHSFLNWWDEDGVSKTLPSPEEANAVQVLTIHKSKGLAF 772

Query: 586  PVVFLVDTGSQV-FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              VF+      +      +  +    +     G        +  N+ V+      +  + 
Sbjct: 773  RAVFIPFCDLGLSGKSNSVFWVPAQETPYALLGSIPLKYSKELANSSVAKYYFEEELYSH 832

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             +   ++YV  TRA D L I    +  NE KS    +  +  D F  +  +         
Sbjct: 833  MDSLNMIYVATTRAKDYLFIGIKGSEKNEGKSIGDLFCLIYQDQFDEEGLM--------- 883

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
             +  +I  +         PL+   T  ++ +  +  +        +I +           
Sbjct: 884  TQGNYIHKQVKESEKNIIPLKSYPTSDRISEIYETVEDRHVNHLLNIEQSG--------- 934

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYK 822
                             +G I+H +L  +       R+  I+SY        +  A E +
Sbjct: 935  ----------------RKGSILHDILASV------NRQEDISSYVDDLNIQGIVSADEKE 972

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
              + S   +L +P +   +   S +E ++  K    +       R D+I + +  + I +
Sbjct: 973  EFIQSAKEVLLHPELQYLL---SRAERTIEEKGIVDELGR--QHRPDKILVCKDELIILD 1027

Query: 883  YK-THHHVPQEIEHIPYTHIAQLSIYEKILKDS-YPNKSLVCLLIYVSEPKVFII 935
            YK T+            THI QLS Y+++L    YP  ++   L Y    K+  I
Sbjct: 1028 YKFTNK--------EHDTHITQLSEYKQLLLAMGYP--TVSAYLFYALTKKLKAI 1072


>gi|307544076|ref|YP_003896555.1| exodeoxyribonuclease V subunit beta [Halomonas elongata DSM 2581]
 gi|307216100|emb|CBV41370.1| exodeoxyribonuclease V, beta subunit [Halomonas elongata DSM 2581]
          Length = 1351

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 127/1038 (12%), Positives = 280/1038 (26%), Gaps = 187/1038 (18%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +  E      K  WP    ++  + +  +         +  K +     ++ +       
Sbjct: 274  AERERILGELKAPWPTWVDELEALLEDAADRKAFHGQKLNAKNRA-NWLNKLRDWANDPE 332

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             ++           K +  + + +   +       + D   ++RDR              
Sbjct: 333  AVTPDL---TDAAWKRLTPEGLAEIWKEGPPPTHPALDALAELRDRLAELPE-PFADLLS 388

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                ++    E  +++   L  +DL+   +   +  +    +  +I  +    L+DE QD
Sbjct: 389  HAVHWMARRRETVQRRRAELGPDDLLHRLDAAFQG-EAGDTLASRIRAQFPVALVDEFQD 447

Query: 188  TSLIQWEVIRSLTEDFFV-GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            T  +Q+ +   +       G    S    +  +GD KQ+IY+F GA+    L  +R    
Sbjct: 448  TDPVQYRLFDHVYRLAENRGVVDDSEKSAVLLIGDPKQAIYAFRGADIHTYLEARRD--- 504

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                       + L  +FRS A+++  V++VF   E             +  S      G
Sbjct: 505  ------TAGRHVTLGTNFRSAANMVAAVNRVFEHAEANNEAGAFLFRKKQSESLDQSASG 558

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDS------------------------------- 335
                         ++   +  S     D                                
Sbjct: 559  MEHEAHGAQEARHNERLGELSSTAQRSDPSAQPFSQGFSNPVPFQPVSAKGRKDSLTRDG 618

Query: 336  ----------------LPQESSASILARRIAYTISNMIGTDTIFSNGK-----KRVIQAK 374
                            L + +    LA R A  ++ ++        G       R +   
Sbjct: 619  APQAALTLWHLDSETPLSKSAYLRELASRCASQMAALLREGQAGRTGFTEGEDFRPLAPS 678

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            D+ VLV    +   I    R L      SV  +D+  + +  A  +L        + +DD
Sbjct: 679  DLAVLVNNAGEARAIR---RALLERGVRSVYLSDKEGVYETEAAAELELWLAACAAPDDD 735

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
             +    L SP    +  ++  +     + E  +E           +++        L  +
Sbjct: 736  RALRAALASPSLGLTLAELDAMSGGNQQDELAWEARVMQFRDYHRQWRQR----GVLPML 791

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELI 551
             +  +       +L   +G ++            L E L      L  E      L+E I
Sbjct: 792  HRLLADFSVPGRLLTVPEGERRLTDLL------HLGELLQQASSELDGEHALLRHLREAI 845

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            +  ++     +    ++ + V+++T+H +KGLE P+VFL    +   + K    +     
Sbjct: 846  ARPQEQGEAHRLRLESDADLVQVVTIHKSKGLEYPLVFLPFIAAARPTKKTDLPLRWHDD 905

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII------- 664
                        +          + +        E  R LYV +TRA     +       
Sbjct: 906  EG----------RLHLSLEADEAIRERADHERLSEDMRKLYVALTRARHATWLGLAPLEG 955

Query: 665  -----CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
                       S +    +     +        +         ++   +    + +   P
Sbjct: 956  LEHSAIGRLVASGQPLPPEALRPALEALGDAAHDSTPSGTTGGTVVVSDAPEADTTPVPP 1015

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
            +N         +     ++             +       S        +  +  S+   
Sbjct: 1016 DNDEAPLAPARRPQRTIREHWWIASYSALGYSSHSDSAMGSDDSAPASRSEPTTPSEESA 1075

Query: 780  FNR-------------------------------GLIIHKLLQVIFT-------LPEHKR 801
                                              G  +H LL+                R
Sbjct: 1076 REVHDEPRDSGAMPVNKEPASEGSLHAFPRGPSAGTFLHGLLEWAGQHGFSRVAEDAPLR 1135

Query: 802  KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-----------------MMTTAMSCD 844
               +     +        +   L   +  LL                     +    S  
Sbjct: 1136 DETLARRANRRG---WENQIPALAEWLPSLLSAELPVPNSPAETTTDDTPLRLDRLESYK 1192

Query: 845  SYSEVSVSGK-----------------------INCPKKDIIISGRIDQISISQQNIFIF 881
               E  ++                         ++  + + ++ G ID ++  Q   ++ 
Sbjct: 1193 IEMEFWLAAHRVDTRRLDALVSTHTLGGRPRPALDPDRLNGMLKGFIDLVAEHQGRYYVL 1252

Query: 882  EYKTHHHVPQEIEHIPYT 899
            ++K++H    +  + P  
Sbjct: 1253 DWKSNHLGADDAAYSPEA 1270


>gi|296168414|ref|ZP_06850294.1| exodeoxyribonuclease V beta subunit [Mycobacterium parascrofulaceum
            ATCC BAA-614]
 gi|295896708|gb|EFG76343.1| exodeoxyribonuclease V beta subunit [Mycobacterium parascrofulaceum
            ATCC BAA-614]
          Length = 1103

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 141/1045 (13%), Positives = 277/1045 (26%), Gaps = 185/1045 (17%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT----ILKKAQTLQQASQTQC 61
            G   NE    +          +   +   ++        T         ++L  A  T  
Sbjct: 84   GAGANELVAHLLDGTDAERASRRQRLRDALAGFDAATIATTHQFCQLVLKSLGVAGDTAA 143

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                   L    +            +E +  +   ++ L+ +++       +        
Sbjct: 144  NVTLLESLDELIVEIVDDLYLAHFGRERDDPALAYRDALRLAREVVRNPSTQLRPLHPEP 203

Query: 122  STLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             + A++    AK + A  +  K++  VLD++DL+    D L   D  A +  ++      
Sbjct: 204  GSRAAVCVGFAKEVLAELDTRKRRLGVLDYDDLLSRLADALATDDSPARV--RMHHRWPI 261

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +++DE QDT  +QW+VI              S   T+  +GD KQ+IY+F G +    LR
Sbjct: 262  VMVDEFQDTDPVQWQVIDR----------AFSGRSTVILIGDPKQAIYAFRGGDIVTYLR 311

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                       A        L  ++RS A ++  +  V    +              HR 
Sbjct: 312  ----------AAETAGEKKTLATNWRSDAALVERLQVVLLGAQLGDPAIVVDDVDTYHRG 361

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             R+            +     +   +        D L     A      +A  I  ++  
Sbjct: 362  HRLAGAPRND--PFRLRVVQRETLGRSGIQNMPIDELRAHIGAD-----VAADIRALLAA 414

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
               F     R +QA+DI V+V K KD             D  +  V      +    A +
Sbjct: 415  RATFEG---RPLQARDIAVIVEKHKDAAACFKAL----CDAGVPAVYTGDSDVFASDAAE 467

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            D + L                  +  F  + + +        +                 
Sbjct: 468  DWLCLLEAFDQPHRPGMVRAAAATMFFGETAESLAAGGDALTD----------------- 510

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
                V + + E    A+       F     +  G +   ++ G   +  L        + 
Sbjct: 511  ---RVAETLREWAGHARERGVAAIFEAAQLSGMGDRVLSAQGGERHMTDLAHIAQLLGQV 567

Query: 540  EQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 SSL  L   L +        P   R   ++   V+IMTV  +KGL+ P+V+L   
Sbjct: 568  THRERSSLPALRDWLRRQREERVGAPERNRRLDSDAAAVQIMTVFVSKGLQYPIVYLPFA 627

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                      +       +         +      +     +    +K    + +RL YV
Sbjct: 628  --------FNRNTQDRDVVLFHDDGVRCLHIGGKDSPDFKAVEILGRKEDASDDSRLTYV 679

Query: 654  GMTRASDQLIICKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             +TRA  Q++                    ++  +    D    +  +DE          
Sbjct: 680  ALTRAQSQVVAWWSPAFDEPNGGLSRLLRGRRPGEAFVPDRCEPAKISDEDALDRLREWE 739

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS------------------ 745
                  I        P   P      +      + I                        
Sbjct: 740  AAGGPVIERSVVAAAPSVPPEPVPSGLDNRHFHRGIDTGWRRTSYSGLIRVTETFETTGV 799

Query: 746  ---PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
               P   ++++     P      G      +         G ++H +L+    L      
Sbjct: 800  GSEPEVTELDDEAGDVPVAQGASGPAAPSPMADLPVGAKFGSLVHAVLETADPLAADLAA 859

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGK 854
                   T +           L  ++  + + P+        +      D   E+     
Sbjct: 860  ELAARVRTHSVWWPVDVPPDALAAALVPMHDTPLGPLAGGRTLRQIGLADRLRELDFEFP 919

Query: 855  INCPKK-------------------------------------------DIIISGRIDQI 871
            +                                                   ++G +D +
Sbjct: 920  LAGGDAVSAGPEIRLADLGAALRTHLPADDALAPYAGRLLSRPLGEQPLRGYLTGSVDAV 979

Query: 872  SISQQ----NIFIFEYKTHHHVPQE--------------IEHIPYTHIAQLSIYEKILKD 913
                        + +YKT+     +                 +   +  Q  +Y  +L  
Sbjct: 980  LRVPDGAARRYLVVDYKTNWLGDPDRPLTSADYDRPRLVEAMLHSDYPLQALLYSVVLHR 1039

Query: 914  S--------YPNKSLVCLLI-YVSE 929
                     +P++ L  +L  +V  
Sbjct: 1040 FLRWRLPDYHPDRHLGGVLYLFVRG 1064


>gi|220919102|ref|YP_002494406.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956956|gb|ACL67340.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1111

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 132/909 (14%), Positives = 274/909 (30%), Gaps = 60/909 (6%)

Query: 41   TGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII-TQEINKKSPDLKEK 99
             G+  +    + +++    +        L      +K   + +                 
Sbjct: 249  AGSRWVAATRRRIERIRDQEDPVLVLKELLRCAPHRKLGMKADFPGDPAGWALYKAFLGD 308

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
              K       +RD              +  A  + A YE  K ++  +   D +    +L
Sbjct: 309  DGKKALREGSLRDDLLRPFARWLARRLVAAAPAVVAMYERVKARHRAV---DQLDLLLEL 365

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS---PRTL 216
                     +R +     +H+++DE QDT  +Q EV+  L E   V  +       P  L
Sbjct: 366  RDLLQRDRAVRAEYQALFDHVMVDEFQDTDPLQAEVVLYLCEQGAVAGDWRDVRLVPGKL 425

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
              VGD KQSIY F  A+       + I ++          + +L  +FR    ++  ++ 
Sbjct: 426  TIVGDPKQSIYRFRRADIGVYAAVRAIVER------GPHVVAKLKANFRCEPALVRWLNG 479

Query: 277  VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
             F       G+   +           G V    L         S       +  S     
Sbjct: 480  TFD------GVLGKAAADAPVFDPEAGTVANEPLLAGRDGGAPSAVQVLPLAAESGKKPE 533

Query: 337  PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
             + + A+ LA  + + +     T    + G  R     D+ VLV    + PL+      L
Sbjct: 534  LRATEATALAAWLRWLVEGKRRTIVDPATGALRPAGYGDVSVLVTATANLPLLFPELDRL 593

Query: 397  KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 +        +  +    +  +   R +  ++D ++   +L+ P F    DD+ + 
Sbjct: 594  ----GVPYAARGGTLFLEDPLHQQFLLGLRALADRDDGIAQAALLRPPFFAVDHDDLARA 649

Query: 457  CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK-KGRQ 515
                              + G+ + +     + EL        P      +L     GR 
Sbjct: 650  RAADP----------ASTHAGVLRARAAQAMVRELRRTRLDRPPGATARDLLERTAFGRA 699

Query: 516  QFISRFGNEVIDVLDEF--LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
              +   G + +D L E   +   +  E   Y +    +         +        + V+
Sbjct: 700  AALGPNGAQRLDALRELCLVLDAVAAEGLDYDATTARLRAWVDDAVQLDPPRPVGTDAVQ 759

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+TVH AKGLE PVV L D  + + +        +  +        + +   +       
Sbjct: 760  ILTVHQAKGLEFPVVVLWDGCANLAARDVRAPFVVDRT---GEAWAVALDGLEWEEPEGG 816

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            ++    K+    E  RL+YV  TRA D L++                  + +     + E
Sbjct: 817  EVAGREKRYLDAERLRLVYVAATRARDLLVLPVAGEPDP----------EWITGRLVSGE 866

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                ++  +        A+      P   P      +   +          +        
Sbjct: 867  AAAPVETLDPYLVGAEPAWAGELPAPAPRPPTDGSALAAEVRAAWQSASADATRPRFAPA 926

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQ-----TFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                    +    +   E+     +         G  +H  + ++   P       +   
Sbjct: 927  SVTGEAHALVEAAERPGEAGAPRPERTSRHGRVFGDTVHLAIGLVLRDPALAPAAAVARA 986

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI 868
                       E  + +      LE   +  A   D   E  V+          ++ G +
Sbjct: 987  AGATGLSERRAEAADDVARALAALEQAGLRRAPGPDLQLEYPVA----LAGDGKLVQGYV 1042

Query: 869  DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIY 926
            D + +    + + ++KT      ++      ++ Q+  Y +IL      +   +   L++
Sbjct: 1043 DLLGVRGGRVVVVDFKTDAPPAGDVHASHAAYVEQVRGYARILVALGVAREGAVDAGLLF 1102

Query: 927  VSEPKVFII 935
             ++  +  +
Sbjct: 1103 TADGGLRWV 1111


>gi|327404466|ref|YP_004345304.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
 gi|327319974|gb|AEA44466.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823]
          Length = 1049

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 107/789 (13%), Positives = 234/789 (29%), Gaps = 125/789 (15%)

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            L + + + +I  ++    NH  +DE QDTS +QW  I  L  +       +      F V
Sbjct: 367  LVQNEDAPFIYERLGSRFNHFFLDEFQDTSRLQWLNIVPLIHNSLGSNYFN------FIV 420

Query: 220  GDEKQSIYSFHGAEPKRVLREKRIN--------QKRATNAGQKFSIIELPLSFRSTADIL 271
            GD KQSIY F     ++ +    I          +R+    +   +  L  ++RS   I+
Sbjct: 421  GDPKQSIYRFKNGVAEQFVALPAIFNPENEPSIHQRSLFFQEMGIVKGLDDNWRSAEKIV 480

Query: 272  TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               ++ F    +    +        +++ +  + G V+L        D+           
Sbjct: 481  AFNNQFFQELLHFMPENGQEFYNQLNQNPKGKKNGYVELILNKRKDLDT----------- 529

Query: 332  YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                            ++   I   I              +  DI +L R++KD      
Sbjct: 530  ----------IEYTNSQLLTWIQQCISDG----------YKPSDICILGRRKKDCNQYAN 569

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
              +         +V +D  ++   L ++  +   ++ +++ D       ++   F F   
Sbjct: 570  FLKS----KGYQIVSSDSLLVNSDLFVQLTLTYCKWKVNRFDS---QRAMQFAYFYFDH- 621

Query: 452  DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                   +       Y+   K  +   SK     + +               F  I    
Sbjct: 622  ------FKNENNFATYDSCFKTLDNNSSKVY-FSEQLFFDQSKLDANFLDASFQNIYSLL 674

Query: 512  KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
                + I     E    L + L+   + + ++   L E I   E+         + N   
Sbjct: 675  VDFMKLIDVDPIENN-YLQQLLDLAYQFDMSNGPDLMEFIHYYEKNEEKFSVQLTENEQA 733

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            ++IMT H +KGLE PVV +                    +   +    +   +      +
Sbjct: 734  IQIMTAHKSKGLEFPVVMIPSFNFFSGGGN-------FDTYLMEINEYVVETKMSQFEAV 786

Query: 632  VSDLIKHLKKSTQE---EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            + ++    +K       +   LLYV  TR  D+L     + + N    N    +  ++  
Sbjct: 787  IPEIKVEAEKENDAKTMDAINLLYVAFTRPQDRLYGININGSKNSFFRNFEGVFSKLF-- 844

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                              +     E      E   ++ +   +      +  +      +
Sbjct: 845  -----------------PEAVQETEIHVKFGEAPEIKHQSKKQTTDFSPESIQNFLWFPE 887

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
              I         ++                    G   H +++         ++    + 
Sbjct: 888  ISIQSTKEQETDSL--------------TTAQRIGKQFHFIMEK-----SDSKETAFYAL 928

Query: 809  CTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGR 867
             T   K    +E++ +L  +      +  +        +        +    K  +   R
Sbjct: 929  MTGLLKGQIEQEFEGILKQLLEEAFNDKHLINLFENGKH---LNERTLIFDVKTRL---R 982

Query: 868  IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             D++ +S++   + ++KT              H  Q+  Y  +L++      +   L Y 
Sbjct: 983  PDKLIVSEKQAIVIDFKTG--------EKSQKHEEQVLGYMTVLREI-GMTEIRGYLYYT 1033

Query: 928  SEPKVFIIP 936
                +  + 
Sbjct: 1034 GGLGLVEVS 1042


>gi|326801224|ref|YP_004319043.1| UvrD/REP helicase [Sphingobacterium sp. 21]
 gi|326551988|gb|ADZ80373.1| UvrD/REP helicase [Sphingobacterium sp. 21]
          Length = 729

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 88/543 (16%), Positives = 179/543 (32%), Gaps = 119/543 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +       K+++ ++D++DLI    D LK       +   +  ++ +IL+DE QDT+ I
Sbjct: 271 RIYTLLAAYKQRSNLMDYDDLIDILRDKLKTNTHFRQV---LQAKVAYILVDEYQDTNNI 327

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E++  L++              +  VGD+ QSIYSF GA  + +LR  +  +      
Sbjct: 328 QREIVELLSQ-----------KGNITVVGDDAQSIYSFRGANFENILRFPQHFEN----- 371

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++++  ++RST  IL   +K+             S      +             
Sbjct: 372 ---CGVVKIEENYRSTQRILDFTNKLMESARIGFKKELFSRLHKGRKP------------ 416

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                   + +    +  A  I  TI  +   D          +
Sbjct: 417 -----------------------RINRLVDTTEEAAYIVDTIMTLKEND----------L 443

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D  +L R    +  +    +       I  +        +   +KD+++  + +++ 
Sbjct: 444 EYSDFAILSRASWQSNFV----QAELMKRNIPFIVVGGIKFGERRHVKDMVSFLKIMMNP 499

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D +++  +LK  L    +    +I  + HE     E             + ++   + +
Sbjct: 500 MDAVAWHRILK-LLEGIGDVRAKEIIVKIHEQHGRIETNLFEGKKHGEHLKELLDLFNRM 558

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
             +    +P D    I    K   + +    +     L+ F     + E      L++ +
Sbjct: 559 QQL--GSAPVDLIPPIYEFYKPLLKQLEDDFDAREIDLEIFAEIAAKYE-----DLEKFL 611

Query: 552 SELEQYPPTIKRA------HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           ++    PP+ +          ++   + I T+H+AKGLE   VF+      +        
Sbjct: 612 ADFTLEPPSNRYQDKTIPFDESDEKPLTISTIHSAKGLEWHTVFVPFALDGILPS----- 666

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                        +         EE  RL YV  +RA + L I 
Sbjct: 667 -----------------------------VRSMASLEEIEEERRLFYVACSRAKENLFIT 697

Query: 666 KHS 668
             +
Sbjct: 698 MPA 700


>gi|237741551|ref|ZP_04572032.1| DNA helicase II [Fusobacterium sp. 4_1_13]
 gi|229429199|gb|EEO39411.1| DNA helicase II [Fusobacterium sp. 4_1_13]
          Length = 919

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 132/872 (15%), Positives = 275/872 (31%), Gaps = 174/872 (19%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            +++   + +     +  +++   +   +     YE+   +N ++DF  L +   ++L K
Sbjct: 160 LRNKINDLNENAIDIESVQTSDIYINFIRSAYKLYEKQLFENNIVDFSYLQVEFLNMLLK 219

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +       K++   ++I++DE QD++ IQ +++ S++++           + +  VGDE
Sbjct: 220 NNE---FLEKMNNNFDYIMVDEYQDSNKIQEKILLSISKN----------KKNICVVGDE 266

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA  + +L   +           +  +I L  ++RS   I+   +K  +  +
Sbjct: 267 DQSIYRFRGASAENILNFSKHF------NNNECKLIVLNENYRSVNHIVEFNNKWINAID 320

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                                       W     + +     + +  +S    +   +  
Sbjct: 321 ----------------------------WHGNRFEKNIVSMRENDYMSSNVFHISGSTLD 352

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
             + R     I  +  ++ I             I VL    KD                I
Sbjct: 353 ENI-RNTVTFIKKLKQSNKIT--------NYNQIAVLFSHFKDKS--AKKLEDALKKENI 401

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            V      +  +   +K        IL+          L   L      D+ ++  ++  
Sbjct: 402 EVYSPRTKVFFEMYEVKLTFG---VILACFKKYFPEEALDIYL--LECLDLARLEIRKDN 456

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
               +              +  I+ I E     +F S ++ F  +L     +        
Sbjct: 457 EFLTW-------------IKEKIENISEY----KFNSLNEIFYELLNFSYYKNVLKEETP 499

Query: 523 NEVID--VLDEFLNFTLRNE---QNSYSSLQE--------LISELE----QYPPTIKRAH 565
            E      L          +    +   S+++            LE         I    
Sbjct: 500 IEARANHNLAILSKIFKNFQKYVHSKKISIEDDFSIIKYFFTKYLEILKQSRVDEIFSEE 559

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              ++ +  +T+H +KGLE PVV +    +       + +   +  L +           
Sbjct: 560 DYPNDCIPFLTIHQSKGLEFPVVIVFSLYTTPNVSGDLSRQTSIDRLINSN--------- 610

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                               ++ R  YV  +RA + L++  +    +E   N + ++  V
Sbjct: 611 ---------SKFSEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSE---NFKPFFYSV 658

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                    + +I L     KDE     ++T                      I    + 
Sbjct: 659 RGVNSLQFDINQINLDEVTKKDERKILSYTT---------------------DIALYRYC 697

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
           P+K  +      +                 D + FN G+I HK ++ I      K++ F 
Sbjct: 698 PMKYFLVREKEYS---------------TFDKKVFNLGIITHKAIEHINKSFLQKQEIFS 742

Query: 806 TSYCTKNAKLWP-------AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
            +Y     K              + ++  + + +++        C    E S   +    
Sbjct: 743 DNYIKNLVKNIYKFQNIDLDNNVERIIDIVKKYIKDE--KDNFKCIKKVEAS---EFRVE 797

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             + I+ G+ID I   +  I I ++KT  +           +  QLS+Y+ +L+  Y +K
Sbjct: 798 D-NYILYGQIDLILEDENEIKIIDFKTGKY---NKIEFSSNYRQQLSLYKLLLQKKY-DK 852

Query: 919 SLVCLLIYVSE---PKVFIIPQNKLNKAFAEI 947
            +   L Y+ E    K   I    L +    I
Sbjct: 853 DIKTYLYYLEEDEPKKEIYIDDEDLKEDLENI 884


>gi|171058460|ref|YP_001790809.1| exodeoxyribonuclease V subunit beta [Leptothrix cholodnii SP-6]
 gi|170775905|gb|ACB34044.1| exodeoxyribonuclease V, beta subunit [Leptothrix cholodnii SP-6]
          Length = 1272

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 133/1047 (12%), Positives = 280/1047 (26%), Gaps = 182/1047 (17%)

Query: 1    LKNRFGLSLNESYELI--YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
            L++  G    +  + +   K  W      +                    K+  +     
Sbjct: 222  LRDWLGQIAAQRSQELAQLKAGWVERADFMQGWINQHRTCKPPVLAGARLKSNNVSDWFD 281

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKIRDR 113
                      L +  L    T    +  + I +   D     +             +  R
Sbjct: 282  ALRAWAADPALET--LDMGKTAPTRLTPEGIAECFNDGCAVPVPADFAAFAQLMFALGQR 339

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
               ++  +   A       +       K++     + DL+   +  L        +  +I
Sbjct: 340  APLHEPLQRHAAF-----GVARRLAALKRQAGRFGYADLVERLDAALHGP-AGERLAQRI 393

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
              +    LIDE QDTS +Q+ +   L +        + +   L  +GD KQSIY F GA+
Sbjct: 394  RTQYPLALIDEFQDTSPLQYRLFDRLYD-----VAANRADTGLLLIGDPKQSIYGFRGAD 448

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                L+ +    +R            L  +FRSTA ++  V+ +F   E A+     +  
Sbjct: 449  IYSYLKAREATAER---------RYMLTTNFRSTAALVAAVNTLFEQAEAARPEGAFALG 499

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                R+         +   +V+    +     Q +W         +     LA   A  +
Sbjct: 500  KDESRAL-PFDPVAARGRGEVLVAGGAALPALQLAWLPGAGQ--AQVQRRELADHAAAQL 556

Query: 354  SNMIGT---DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
               +          +   R ++  D+ VLVR + +   I    R L+     SV  +D+ 
Sbjct: 557  VAWLADPTCGWSEGDAPLRRLRPSDVAVLVRDQHEAAAIR---RALQRRGVHSVYLSDKD 613

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             +       DL+     +    D L       +  ++   D++          ET ++  
Sbjct: 614  SVYASAEAADLLRWLMAVAQPLDGLLARAAYANASWDLGLDELAAHVH----DETAWDAR 669

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVID 527
                   + +   V +    L  + Q     D     L       G ++  +        
Sbjct: 670  LAL----LQQLHGVWQRQGVLTMLRQTLHALDLPARWLAEGNEAAGERRLTNVL------ 719

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR--------------------AHSA 567
             L E L     + +     ++ L + +       +                        +
Sbjct: 720  HLGELLQAASAHLEGEAGLIRWLAAMVRGGGDGAQGGSGMGGSAAAAGAGGDAHIVRLES 779

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            +   V+++TVH +KGLE PVV L    S                 +          +   
Sbjct: 780  DAQLVQVVTVHKSKGLEYPVVMLPFANSAR---------AWRKKRHGALEWVDDDGRRAL 830

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS----------- 676
                  + +   ++    E  RL YV +TRA   L +      +    S           
Sbjct: 831  DFAQQPEHVAAAERERLREDLRLFYVALTRARHALWLGIGVPPTGRNGSAGPLSALGYLL 890

Query: 677  ------NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
                   + +   ++       +      +   +        +     P + P   +   
Sbjct: 891  AGDQGLREDSLGSVLQALCDVSDPPATRSVCLDVPAQRVRWRDDRAQPPLHLPPVFQAEF 950

Query: 731  KQ--------------------------------------LMDEQKIPKKLFSPIKNDIN 752
            ++                                      L +E     +L         
Sbjct: 951  ERRWAIGSFSGLVRDLGERGAGAGVPATPHGATDLLRTEQLQEELAQMAQLTQMAAQADG 1010

Query: 753  EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-----TLPEHKRKNFITS 807
            +P   + S        ++ +     +    G  +H  LQ +         E      +  
Sbjct: 1011 QPAAPSGSRA-AAIAGSVPTWHGFPRGALPGNFLHDQLQWLAEEGFERAGESGVAAALLR 1069

Query: 808  YCTKNAKLWPAKEYKNLLLSITRL---------------------------LENPMMTTA 840
             C +      A    + L  +                              L +  +   
Sbjct: 1070 RCERAGHAQHAAGAVDWLQQLLATPLPPLGASLAEVDRLLPEMEFWMPSVALRSAELDRI 1129

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE------ 894
                          ++      ++ G  D +       ++ +YK++     + +      
Sbjct: 1130 CQQHLLPGQPRPALVSRQLDG-LLMGFADLVFEHGGRWWVLDYKSNALGATDADYTPAAL 1188

Query: 895  ---HIPYTHIAQLSIYEKILKDSYPNK 918
                + + +  Q +IY   L     ++
Sbjct: 1189 SQAMLAHRYELQAAIYLLALHRLLRSR 1215


>gi|254804663|ref|YP_003082884.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis alpha14]
 gi|254668205|emb|CBA04955.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis alpha14]
          Length = 1204

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 130/942 (13%), Positives = 267/942 (28%), Gaps = 168/942 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +        N  +  +        L L  YLN    E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFGYDLNALEEAEEATIIRLQLDLIGYLNRSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETLARTVAENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +   ++R              S+   +   
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAE------------SRLSPKRPA 515

Query: 325  QQESWTSYFDSL--PQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVR 381
             Q  W    D+    ++      A   A  I+  +        N K   +Q+ DI VLVR
Sbjct: 516  VQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGCPLQSGDIAVLVR 575

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +++   +      ++  V   R  +        L AL  F L      +   +L
Sbjct: 576  THNEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVL 631

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +F ++   +        E     E                   +             
Sbjct: 632  TSSIFGYNAQQLHDFNQNESEILHWAE--------------SARTALDNW----NQYGIF 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPP 559
                          + +SR     +    + L        +  + ++L + + +      
Sbjct: 674  AAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAG 733

Query: 560  TIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        ++ + V+I+T+H +KGL+ P+V+         +     ++    +   
Sbjct: 734  NNGGDNRSIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRT 793

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +               +  D  K        E  RLLYV +TRA +QL I    ++    
Sbjct: 794  ELLAKAQ---------LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTAD 844

Query: 675  KSNQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                     +            +   D      +    +  +      +S       P  
Sbjct: 845  NPLAYLIEGLPQDSRETVRRAYACEKDGIAMLKRNWQRVADNAPSGTNFSFTEDAPPPAV 904

Query: 726  REETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILN 758
                  Q  +                                ++   P  +         
Sbjct: 905  YCGNAGQTAEFAASDIPKRGFRFIRHTSFTALSRQTQTPDGGEEDACPSLDAAETSVAAM 964

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP 817
            PS  +T   ++  S+ +  +    GL +H++L+          ++  I     K    + 
Sbjct: 965  PS--ETPTASDGISIHNFPKGTQAGLCLHEILEDFKFGQAAAGQETLIADKLKKYG--FE 1020

Query: 818  AKEYKNLLLSITRLLENP-------------------------------MMTTAMSCDS- 845
                  +        + P                                +    + D  
Sbjct: 1021 EIWLPAVAEMAEACRKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWFARDDI 1080

Query: 846  -YSEV--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------E 892
               EV  + +  ++    +  ++G  D +       I + +YK++H             +
Sbjct: 1081 RLPEVCRAAAETLDFHTVNGFLNGFADMVCQDPDGNICVIDYKSNHLGADASAYTQQAMD 1140

Query: 893  IEHIPYTHIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
                 + +  Q  IY       +  +     ++    +++  
Sbjct: 1141 EAVAHHHYYLQALIYAVAAMRYFKLRGQPPAAVSVRYLFLRG 1182


>gi|119479991|ref|XP_001260024.1| ATP-depentend DNA helicase, putative [Neosartorya fischeri NRRL
           181]
 gi|119408178|gb|EAW18127.1| ATP-depentend DNA helicase, putative [Neosartorya fischeri NRRL
           181]
          Length = 1001

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 104/657 (15%), Positives = 197/657 (29%), Gaps = 152/657 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE     + +LD++DL++   DLL++         +    +  +L+DE QDT+ I
Sbjct: 173 QVYREYESYLATSNLLDYDDLLLRCADLLRRHP-------QCVSNVQAVLVDEFQDTNHI 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E++                 R +  VGD  QSIY F  AE K + R ++         
Sbjct: 226 QYELMNLFA----------VRNRRITVVGDPDQSIYGFRSAEIKNLGRMQQHY------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +  S+I L  ++RS+  IL     V     +        T             GT+ + 
Sbjct: 269 -KDTSVILLEDNYRSSGSILRSAQDVIEQDSSRPSKKLQPTH----------CPGTMPVL 317

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
            ++ +                         A   A+ I   I   I           +++
Sbjct: 318 RKLPT-------------------------AEAEAQWIVLEIKRSIA-------MTGKLL 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L+R    +  I            +           D + IK L+   R I + 
Sbjct: 346 NYSDFAILLRSAALSRHIESEM----GKQGVPYRMVGGLRFFDRVEIKVLLDYLRVISNP 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGI-----------S 479
            +  + + ++  P     E+ +  +          ++ +I+  A                
Sbjct: 402 GNSDALLRIINVPSRKIGEESVKTLMNGADAAKIPLWNFIKDVAQGRRSTDKNLSKLTDQ 461

Query: 480 KFQHVIKYIH----ELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEF 532
               ++  I     +L+  A   +P      ++     R+   +   +        ++E 
Sbjct: 462 GLCTLVGIIESSRQKLLECADGSAPRKLLEFMIKKLNFREYLTTTYCQNEENRWANVEEL 521

Query: 533 LNF-----------------------TLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
           L                           +       +L + ++ +      +        
Sbjct: 522 LAQAGDVAATAAEKDQDDSLPEIQGLAQQQAHQGEEALSQFLANVALSTEVLSEDGDQPQ 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            +V I T+H AKGLE PVVF+    + +  H                             
Sbjct: 582 EKVTISTIHAAKGLEWPVVFVPAVYNGIIPHS---------------------------- 613

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                     +    +E  RLLYV MTRA   L +      S  +++       +     
Sbjct: 614 ----------RAEDSDEERRLLYVAMTRAQALLYLSYPLRQSRNEEATTTVTSFLPPKII 663

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
            N  R     L   +               E+  L   +++  L D+Q       +P
Sbjct: 664 ENRFRPLGPNLQEKVVYGIADILRRPRPSSESI-LAAYDSVPSLRDDQWTADGKEAP 719


>gi|227536350|ref|ZP_03966399.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC
            33300]
 gi|227243726|gb|EEI93741.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC
            33300]
          Length = 1075

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 137/882 (15%), Positives = 274/882 (31%), Gaps = 104/882 (11%)

Query: 71   SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            S       TP++       N     +   LK     F      +     F++ +  L L 
Sbjct: 280  SSLHKLIDTPEEWFQKNTDNSPFYSINPLLKDLCTYFQHEEGSYILATQFQNNVYYLRLM 339

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEV 185
            + L       ++++  L    LI +   LL        D  ++I  KI     + L DE 
Sbjct: 340  QELALLLRAYREESGNL----LISDAQHLLTGITEDAGDNPSFIWEKIGNRYRNFLFDEF 395

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDTS+ QW+  RSL ++     +   +      VGD KQSIY +   +   +        
Sbjct: 396  QDTSVSQWKSFRSLVQNAISAPSEEFTDH--LIVGDTKQSIYRWRNGDWSILES-----G 448

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE----NAQGLSEDSTTTIRHRSSR 301
             +A           L  + RS+  I+   + +++       +   L    T         
Sbjct: 449  AKADLGSHHIVDDNLEDNHRSSTAIIEFNNFLYASFPRLLQDKLNLLVAETEKTELLDWW 508

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT-D 360
            + +     +     +   +      E          ++     +     +    +  T +
Sbjct: 509  VAKGYHDIINSIFENVRQNTTPRTPEGGIIKISKFSKQEEEERMFSDSVFREYALKDTIE 568

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             I    +       ++ VLVR   +   +            I VV  D  ++ +  AIK 
Sbjct: 569  EIRRIQQDFHYTYSEMCVLVRTNGEAESVVNELMA----AGIPVVSGDALMIANSTAIKL 624

Query: 421  LMALGRFILSQEDDLSFVCM----LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            ++     ++  +++ S        L   + + + D    +  +      +   +      
Sbjct: 625  IINTLYILVGYDENTSLYKANCISLYHKIRDIAIDPDIFLTIKGKSLSQLSGILPPRLCE 684

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
              + +                    +    I+ A    Q+       E +  L  F + T
Sbjct: 685  EANNW--------------MQLPLPELVERIIHAYGLDQK------PEYLAYLLSFRDIT 724

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                +     +   ++  E+             N V++MT+H +KGL    VF+      
Sbjct: 725  ANATKQGEKGVLSFLNWWEEDGVRKTLPSPDAANAVQVMTIHKSKGLAFRAVFIPFCNLD 784

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE---EYNRLLYV 653
            +        +  +P++N        IP         S +  +  +       +   ++YV
Sbjct: 785  L--GGKTNGIFWVPAVNTSYEALKSIPLKYKDELAKSSVANYYFEENLYSHIDALNMIYV 842

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
              TRA D L I        +K SN    + +V       E V  ++          +  +
Sbjct: 843  ATTRAKDYLYIGIKEKKDLKKLSNTGDLFQLVLAEHFESEDVYNVEKP--------VRTD 894

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                 P+   L    T  +L D     ++  +     I                      
Sbjct: 895  RKQDSPQTIGLHAYPTSDRLSDIYIPHEEKNAAHVLHI---------------------- 932

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
                Q   +G I+H +L  I +L   +  +++ S   +       +E        TR+L+
Sbjct: 933  ---GQAGRQGSILHTILADIKSL--AELPSYLDSLLLE--GTIMEEEKILFQQEATRVLQ 985

Query: 834  NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
            +  +   +   S +E   S +        +   R D+I I    + + +YK         
Sbjct: 986  HEQLNELL---SKAEQHFSERSIVSADGHV--YRPDKILIQDNFVAVIDYKF------TF 1034

Query: 894  EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            +  P  H+ Q+ IY  +L      K +   L Y +   +  +
Sbjct: 1035 QEHPE-HLDQVRIYMDLLGKI-GYKDVEGYLFYATTNTLKPV 1074


>gi|118497936|ref|YP_898986.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella
           tularensis subsp. novicida U112]
 gi|194323158|ref|ZP_03056942.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118423842|gb|ABK90232.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella
           novicida U112]
 gi|194322522|gb|EDX20002.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 1216

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 118/766 (15%), Positives = 234/766 (30%), Gaps = 87/766 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++RD     K  ++          +   + +AK++  VLDF+DLI      +KK    
Sbjct: 272 VKELRDLQQEIKQAQAAQFIRKACLQIRESFAKAKEQKGVLDFDDLITKLCQSVKKSPD- 330

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT-------------------------- 200
             +   + ++    LIDE QDT   Q+E++ ++                           
Sbjct: 331 --LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSHSHEGGNLLTNGLNLKDTRL 388

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            ++    + + S   L  +GD KQ+IY F G +    L+ K    +         +   +
Sbjct: 389 REYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEE--------NRWSM 440

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST +++   +++F   +          T I         V      ++     D 
Sbjct: 441 DTNWRSTGEMIKAYNRLFYKQDYQPEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFDD 500

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              P    +    +   +    + L+      I+ ++ T  +            DI +LV
Sbjct: 501 NFKPINYFYYEVAEDDNKSDIDTNLSLWTVNEITRLLNTQKVAE---------NDIAILV 551

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
              K   +I    +        SV  + R  +      K+++AL   I   E+       
Sbjct: 552 ENGKQAKIIQQALQAKNLS---SVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKRA 608

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           L + L          I        + ++   + A                L         
Sbjct: 609 LSTSL--LGGRADKFISYIDENDVSAWDDEIEKA--------------KSLRQQWHKYGF 652

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPP 559
             F   I+     ++          I  L E +       ++    ++    +L      
Sbjct: 653 MAFIMQIIHENFTQRADSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQLNNTATS 712

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             +    ++ N ++I+T+H +KGLE  VVF+                      +    + 
Sbjct: 713 EGELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDSDLKQTVY 772

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                          + +   K   EE  RL YV +TRA  +  I      ++EK    R
Sbjct: 773 KIGKD--------DSVKQQADKEVIEELMRLFYVAVTRAKHRCYIGVAKYNNSEKSPLAR 824

Query: 680 T-----WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                   D +              L  +I      + +  +   +N+  +  +      
Sbjct: 825 FLGYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDTLKANYISK 884

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------KTNLESLLSDNQTFNRGLIIH 787
            E    + L     +            ID             L    + ++  + G I+H
Sbjct: 885 LENDSWEMLSFSKISKSKVQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNILH 944

Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
            +L+           N +     +  K+  A+++ NL L +   LE
Sbjct: 945 NVLEHTDFSLGEIDGNLLKEQMDRY-KVVAAEDFDNLKLWLEECLE 989



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 9/75 (12%)

Query: 846  YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT------ 899
              E       +  K   ++ G ID I   +   ++ +YK+++      ++          
Sbjct: 1085 LREYDNFTNFSNQKIFGMLHGFIDLIFEYEGKFYVADYKSNYLGDTLEDYNQQAMQEKNQ 1144

Query: 900  ---HIAQLSIYEKIL 911
               +  Q  IY   L
Sbjct: 1145 SSFYDLQYLIYSVAL 1159


>gi|229821382|ref|YP_002882908.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229567295|gb|ACQ81146.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 1136

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 130/1026 (12%), Positives = 264/1026 (25%), Gaps = 172/1026 (16%)

Query: 42   GNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKL 100
                    A+ ++       ++ +   +            ++++T  E  +    L ++L
Sbjct: 161  DAGRYQLAARVVESWDTDLDVDVKPVTVIGAVADLAGALAEHLLTPHEAAEAMLRLADEL 220

Query: 101  KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
            +  ++   + +           +L S      L A +   K +  VLDF D +     + 
Sbjct: 221  ED-KEPVARAKAPMAGVARVVRSLRSRAALMPLVAQFAALKSERSVLDFADQVALAARIA 279

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +       +          +L+DE QDTS+ Q  ++R L                + AVG
Sbjct: 280  RD---VPAVGEAERTSARVVLLDEYQDTSVAQLRMLRGLFG----------GGHPVTAVG 326

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D  Q IY + GA    +L       +     G   S   L  S+R+   IL   ++V   
Sbjct: 327  DPHQGIYGWRGASAGSLLAFDTDFPR---ADGTPASRAHLTTSWRNDRAILQAANRVARA 383

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ-E 339
               A   +  +       S   G+ G            D              +      
Sbjct: 384  LRLADEDAAPAVPDEAGESGTAGEAGAAGDEASTPPGPDLVPPLAARPDAGRGEVRSAFA 443

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            +     A  IA  +++        +             VL RKR     +    R     
Sbjct: 444  AHRPEEAATIAAFLADRWRPGRGTA------------AVLCRKRD----LFEPVRAALEA 487

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE--------- 450
              +         L     + D+ A  +         + + +L  P               
Sbjct: 488  AGVPYQVVGLAGLLRTPEVTDVRAALQAAYDPSRGDALMRLLTGPAVALGPADLVALADA 547

Query: 451  -------------------------DDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
                                       I ++  Q      V    +  ++ G ++   + 
Sbjct: 548  ASARTVRRAGDDDAGRGGRREPAEAASIVEVLDQLPPPGWVSPSGRSLSDEGRARLVGLA 607

Query: 486  KYIHELIHIAQFCSPH--DFFTLILGAKKGRQ--QFISRFGNEVIDVLDEFLNFTLRNEQ 541
              +  +  +A    P        ILG        +  +  G      LDE        + 
Sbjct: 608  AQLRRIRGVAHLPMPDLVTATEEILGLDVEVAVHEARAGAGGRARANLDELAAVAAEFDA 667

Query: 542  NSYSSLQE-LISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             +  +     ++ L+      +         +   V+++TVH +KGLE  VV +      
Sbjct: 668  GAALATLGAFLAWLDAAEEHERGLEAAHVEPDPAAVQVLTVHASKGLEWDVVVVAGLTEG 727

Query: 597  VFSHKHI-----------------KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
             F                               +      I     K  +    +     
Sbjct: 728  DFPAVDGGANGVRSSAWLTGVAELPYPLRGDVDHLPELDVIGPVTHKDMDVAREEFRSAA 787

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI- 698
             +    E  RL YV MTRA   L++      + +       +   V              
Sbjct: 788  GERELLEERRLAYVAMTRARHVLLLTGSWWGTRKTTLTPSRFLREVVADGSAVPLPPPWG 847

Query: 699  ---------------------------------KLTNSINKDEWIAYEWSTHHPENTPLE 725
                                                + +        +     P   P  
Sbjct: 848  GTLDAAPAEAAPAEPARAMWPAEPGGATAQALRDAASGVRSWLAAGSDRLDLEPGAEPSA 907

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------LESLLSDN 777
            R              ++  +      + P  L+ S +    +                 N
Sbjct: 908  RAREWLWQARALLDEREAAAGEALPADPPGHLSASAVVQLARDPEAFARARRRPVPAEPN 967

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
                RG   H  ++                +    A L           +   +L    +
Sbjct: 968  PNARRGTRFHAWVEQ---------------HFAAAALLDVDDLDDEATDADLDVLRRAFL 1012

Query: 838  TTAMSCDSYSEVSVSGKINCPK-KDIIISGRIDQIS---ISQQNIFIFEYKTHHHVPQEI 893
             +  +    + ++V   +  P     ++  RID +     S Q + + ++KT        
Sbjct: 1013 ASDWAA--RTPIAVEADVETPLRDGTLVRCRIDAVFPGRRSGQEVHVVDWKTGTPAADRS 1070

Query: 894  EHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYV---------SEPKVFIIP-QNKLN 941
                     QL++Y       +  P + +    ++V           P +  +  ++ + 
Sbjct: 1071 AREARE--VQLALYRLAWSRLHGVPVERIAASFVFVGADDGVVTHDAPMLSELEIEDLVG 1128

Query: 942  KAFAEI 947
            +  AE+
Sbjct: 1129 RHLAEL 1134


>gi|212639901|ref|YP_002316421.1| ATP-dependent DNA helicase UvrD subfamily fused to unknown CXXC
           motif containing domain [Anoxybacillus flavithermus WK1]
 gi|212561381|gb|ACJ34436.1| ATP-dependent DNA helicase UvrD subfamily fused to unknown CXXC
           motif containing domain [Anoxybacillus flavithermus WK1]
          Length = 716

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/584 (14%), Positives = 181/584 (30%), Gaps = 115/584 (19%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
            ++       ++                    L   YE  K++    DF+D++    D+L
Sbjct: 230 DEAMQRISYWKNTLTPLHAITIENEWDERVVQLYKQYEAKKQQLEWFDFDDMLYACYDML 289

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  +       +  +  ++ LIDE QD + +Q+E ++ L                + AVG
Sbjct: 290 RTDEKR---LRQYHERFHYFLIDEFQDINSVQYETMKLLASH----------THHICAVG 336

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ Q+IY+F G++   + + ++              I++L  ++RS   I+++ +++ + 
Sbjct: 337 DDDQAIYAFRGSDSSFIRQFQQDFPN--------TKIVKLTENYRSPHPIVSLANRIIAK 388

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                    ++ T   H  +                                +D   +  
Sbjct: 389 SRTRIPKQMNAQTDSVHMPT----------------------------LFFPYDEEEE-- 418

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  IA  I   +             +   DI VL R       +      L    
Sbjct: 419 -----ATMIACDIEERMKQG----------VHPSDIAVLCRTNASARAVFERLSQL---- 459

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I V   D     +   ++ +++  +  +   D+ +   +         +  +  +    
Sbjct: 460 HIPV-TTDGDSFYNRRIVRYILSFFQLAIDPNDEQAMTDVATVLF--LKQAIMNDLKANA 516

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
              +          +      +  ++ I  L    +   P D    I       +    R
Sbjct: 517 ILQDCSLVEALAKLDGIPPFQKQKLRTIAPLFAKVKEMKPFDAIDFIEKEMGLGEFLKKR 576

Query: 521 F-----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                   +  D + +      +         + + + L         A+    + V++M
Sbjct: 577 GNEGNAIEKGSDDVRDVKVVARKF--------KTIQAFLSHVKRVQAYANKTCADGVQLM 628

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE P+V+++     +  H                                 + 
Sbjct: 629 TIHRSKGLEFPIVYIIGAVDGLLPHD-----------------------------YALEA 659

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
            ++   +  EE  RLLYV +TRA  +L I   S    +K +  R
Sbjct: 660 YRNGDVAPLEEERRLLYVAITRAKQRLFISVPSMRRLKKANASR 703


>gi|121710356|ref|XP_001272794.1| ATP-depentend DNA helicase, putative [Aspergillus clavatus NRRL 1]
 gi|119400944|gb|EAW11368.1| ATP-depentend DNA helicase, putative [Aspergillus clavatus NRRL 1]
          Length = 1000

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 106/736 (14%), Positives = 209/736 (28%), Gaps = 163/736 (22%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L++        +  +++           + +I       +         +          
Sbjct: 106 LRRGFGIADSGDSLAIIKRIL----KRLRCSIQPNAARARISH------QKAHGISPAEA 155

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                +    +  +    + +   YE     + +LD++DL++   DLL++          
Sbjct: 156 AAKYSRGAAKSTENHEFVQ-VYQEYEIYLATSNLLDYDDLLLRCADLLRRHPECV----- 209

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
               +  +L+DE QDT+ IQ+E++              S  R +  VGD  QSIY F  A
Sbjct: 210 --SNVQAVLVDEFQDTNHIQYELMNLFA----------SQNRRITVVGDPDQSIYGFRSA 257

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E K + R ++          +  S+I L  ++RS+  IL+    V     +        T
Sbjct: 258 EIKNLGRMQQRY--------KDTSVILLEDNYRSSGSILSSAQDVIEQDSSRPAKKLQPT 309

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             +                                             +A   A+ +   
Sbjct: 310 HCLGTMPVLRKLP-----------------------------------TAEAEAQWMVLE 334

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I   I           +++   D  +L+R    +  I            +          
Sbjct: 335 IKRCIA-------MTGKLLDYSDFAILLRSAALSRHIESEM----GKQGVPYKMVGGLRF 383

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQ 471
            D + IK L+   R I +  +  + + ++  P     E+ +  + +     + T++ +++
Sbjct: 384 FDRIEIKVLLDYLRVISNPGNSDALLRIINVPARKIGEESVKMLMSSAEAAKTTLWNFVR 443

Query: 472 KFAN-----------CGISKFQHVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             A                    ++  I     +L+      +P      ++     R  
Sbjct: 444 DVAQGRRSTEKSLSKPTDQGLCTLVGIIESSREKLLECTDSSAPRKLLEFVIKKLNFRDY 503

Query: 517 FIS---RFGNEVIDVLDEFLNFT-----------------------LRNEQNSYSSLQEL 550
             +   +        ++E L+                          +       SL   
Sbjct: 504 LTAMYSQNEENRWANVEELLSQAGDASIEESVNDHDDSLPEIQGLTQQEAHRGEESLSRF 563

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           ++ +      +         +V I T+H AKGLE PVVF+    + +  H          
Sbjct: 564 LANVALSTEIVSEEGDQPQAKVTISTIHAAKGLEWPVVFVPAVYNGIIPHS--------- 614

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                        +    +E  RLLYV MTRA   L +      
Sbjct: 615 -----------------------------RAEDSDEERRLLYVAMTRAQALLYLSYPLKQ 645

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
           S  ++S       +         R     L   I               E+  L   E++
Sbjct: 646 SRSEESTTSVTSFLPQKIIERRFRSLGPSLQEKIVYGIADILRRPRPSIESM-LAAHESL 704

Query: 731 KQLMDEQKIPKKLFSP 746
             L D+Q       +P
Sbjct: 705 PSLRDDQWTADGQEAP 720


>gi|284005618|ref|YP_003391438.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
 gi|283820802|gb|ADB42639.1| UvrD/REP helicase [Spirosoma linguale DSM 74]
          Length = 966

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 124/889 (13%), Positives = 251/889 (28%), Gaps = 176/889 (19%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              T+   +++ DL   L +  +E++          +  ST   + +     + Y E   
Sbjct: 143 GEPTRPRWERASDLVRLLNRVSEEYLD------PIVLASSTDIPVRVLGEAYSIYREILL 196

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  VLDF  +      LL+ +     I  K+ ++  +++IDE QDT+ IQ  +I  LT  
Sbjct: 197 EENVLDFSVIQTEFLYLLENQP---QILDKLQEKFRYLMIDEYQDTNTIQERIILLLTG- 252

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        L  VGD+ Q +Y F GA  + +L              +K ++I L  
Sbjct: 253 ---------PRHNLCVVGDDDQGLYRFRGASIRNILEFPDHFPA------EKCTVIRLET 297

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS  DI+T  +   +  +   G S                                  
Sbjct: 298 NYRSHPDIITFYNNWMTRMDWTGGTS-----------------------TTFRYDKTIVP 334

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             ++   +     +    S       +   I +++ +  I             I +L R 
Sbjct: 335 RTEKFHTSPAVIRVGASGSPEQYHEEVLEFIRSLLASGKITD--------LNQIAMLFRS 386

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI-------LSQEDDL 435
            K+  ++         +  + V      +  +   +K ++    F+       L  +DD 
Sbjct: 387 VKNDQVL--ALTEFLEENGVPVFSPRSALFFERDEVKLILGALIFLFPNLFEALKWQDDA 444

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY-----IQKFANCGISKFQHVIKYIHE 490
                 +   +     +  +    +H     +           A+     F  ++  + E
Sbjct: 445 QLSIWDRYQEWKLFFANALRADPAKHRDLIQWARQTAKIHAAMADSTTYAFAALLYQLLE 504

Query: 491 LIHIAQFCSP--------------HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
               ++F +                   + IL   +               VL  F N  
Sbjct: 505 FPLFSEFLNVNMTDPKRDLRAAYNIALLSKILYRFEYLYNVTILTPKNQQSVLQNFFNQY 564

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           LR                            A    +  MT+H AKGLE PVV +    + 
Sbjct: 565 LRFVYEGG------------IQEYEDFDEMAPSGCISFMTIHQAKGLEFPVVMVGSLNAV 612

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
             + +    +                        +     +  +++ + ++ RL Y   +
Sbjct: 613 PRTQREAVDLTPY---------------------LHKAPFEPAEETHRFDFWRLYYTAFS 651

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           R  + L++         +  ++                 +    T    K   I +E+S 
Sbjct: 652 RPQNLLVLTTREKQGQGRSPSKYFDQVHYSLPSWRSPSFRLDDFTFDSLKPVNIKHEYSF 711

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                                     L+            L    + T G          
Sbjct: 712 ---------------------TSHILLYENCPLQYKFYKELKFVEVRTGGVLG------- 743

Query: 777 NQTFNRGLIIHKLLQVIFTL------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                 G ++H+ ++ I                 I S+   N  L   ++   L  +   
Sbjct: 744 ------GSLLHQTIEDIHRHVLRGEPHNELTDEKIKSWYDLNYNLLAKQQRSQLRQAQLD 797

Query: 831 LLENPMMTTAMSCDSY--------SEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
            L    +   +              E      ++  K+D I+ G ID I      + + +
Sbjct: 798 AL----LRQILRYRDRQADKWHLIREA--EVDVSLVKEDYILKGTIDLIEGENGTVELVD 851

Query: 883 YKTHHHVPQE-----IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
           +K+            +      +  QL IY  ++++          L Y
Sbjct: 852 FKSGDKPDVNTTDPRLRRQVNQYRRQLEIYAHLVEERTGQTVSRMNLYY 900


>gi|255281748|ref|ZP_05346303.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469]
 gi|255267815|gb|EET61020.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469]
          Length = 604

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 98/594 (16%), Positives = 177/594 (29%), Gaps = 122/594 (20%)

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
            D  E L  +  E  ++++     + + +      L + +   Y    ++   LD++DL+
Sbjct: 124 EDEAEFLHDTAREISRVKNERIPLEHYYAAGVPQELFRKIYGSYCRGMERAGKLDYDDLM 183

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           + T +LL        I     +   +IL+DE QD + +Q+++I+ L              
Sbjct: 184 VYTWELLS---ARPDILEGWRKRFRYILVDEFQDINRLQYDIIKLLAA----------PE 230

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             LF VGD+ QSIY F GA+P+ +L   +   +           + L  +FR   ++  +
Sbjct: 231 NNLFVVGDDDQSIYRFRGAKPEIMLNFPKDYPQ--------ARQLLLDRNFRCPGNVCDL 282

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             +V S          +                 V+       + +S             
Sbjct: 283 AARVISRNTVRYEKKIEKV---------KADGLPVEKLLFRNQEQESLG----------- 322

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                          I   I   +              + +D  VL R   D      + 
Sbjct: 323 ---------------IIQRIRQGLAQGR----------RYEDFAVLYRSNTDAG----VL 353

Query: 394 RFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                +Y +     D    L +H   + ++A  +         + + ++  P        
Sbjct: 354 SQKLLEYNVPFKMRDTLPNLFEHWISRQVIAYLKLAHGDYSCANVLKIINRPKRYIERSC 413

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           +             YE                I  + + +       P+     I     
Sbjct: 414 LDTQQVDFERLRMYYEDKYWVI--------RRIDKLEQDLAALARMQPYAAVQYIRHGIG 465

Query: 513 GRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
             Q              ++ +VLD         E          + E  +      +  +
Sbjct: 466 YEQYLEEYAEYRKIKAEDLYEVLDRLAQSAKGYETCEA--WFAYMEEYSEMLKEQAKNGA 523

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
              + V + T+H+AKGLE P VFL+D    +                             
Sbjct: 524 QKQDCVTLTTLHSAKGLEFPFVFLIDVNEGIIP--------------------------- 556

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                     K L  S  EE  R+ YVG+TRAS+QL IC       +       
Sbjct: 557 --------YKKALLASDVEEERRMFYVGITRASEQLTICVLKEKYGKSLKPSPF 602


>gi|134095383|ref|YP_001100458.1| DNA helicase II [Herminiimonas arsenicoxydans]
 gi|133739286|emb|CAL62335.1| putative DNA helicase II [Herminiimonas arsenicoxydans]
          Length = 975

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 105/833 (12%), Positives = 237/833 (28%), Gaps = 146/833 (17%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           +       A Y+E   ++  LDF  +      LL+K      +  ++  ++ H+++DE Q
Sbjct: 190 IRALATCFAKYQELLHEHNSLDFSGIQYEALQLLEK---RPEVLAQLRGKLTHLMVDEYQ 246

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ IQ  ++  L  +             L  VGD+ Q +Y F GA  + +L    +   
Sbjct: 247 DTNTIQERILLLLAGE----------RCNLCVVGDDDQGLYRFRGATIRNILEFPALFD- 295

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                  +   ++L +++RS  DI+   ++                              
Sbjct: 296 -----DGQCKQVKLTVNYRSHPDIIRFYNEWMKEQV-------------------WDDGT 331

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V  + + +   + +      +      S  ++ + +  A  +A+ ++ +  +  +    
Sbjct: 332 RVFRFAKQIVPREDEFPDLPAAVRLAA-SDDKDDTTNWHAEVLAF-LNGLKASGQLAD-- 387

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    +  L R  K+  ++            + V      +  +   I+ ++    
Sbjct: 388 ------WNQVAFLYRSVKNDKVV--ALARFLEAQGVPVFSPRSNMFFEREEIRLMIGALI 439

Query: 427 FIL-SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           F+        ++   +  P++     D +     +   + + +   K             
Sbjct: 440 FLFPQFPKVRAWTEGVTLPIW-----DYYDHQCFKPFIDELRKPENKPLLDWARPLAKRH 494

Query: 486 KYIHELIHIAQFCSPHDFFTL-ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
             + +    +     +      +                     L  F     + E   Y
Sbjct: 495 AVLGQNTDYSFSGLFYQLLQFPLFSRFLAEDAVQGVDKGRAARNLGTFSKLLTKFEYLHY 554

Query: 545 SS--------------LQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVV 588
            S                + +  L           +       V  +T+H +KGLE PVV
Sbjct: 555 VSVLNPEFLEKNLRDLFNQFMRFLVDGGIGEYEDEAEYAPKGCVSFLTIHQSKGLEFPVV 614

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                 +          + +                      +  +  + L      ++ 
Sbjct: 615 VCGSLEAVPRKQYSALDVLLEDGGY-----------------LSKERFEPLDHIKNFDFW 657

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           RL Y   +RA + L++         +  ++             D  +  +        + 
Sbjct: 658 RLFYTAFSRAQNLLVLAAQEKQGRGRSPSKYFERLFYELPSWRDVELSALTFEAVKQIN- 716

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                          L+RE +    +   +   + +   K     P   +P         
Sbjct: 717 ---------------LKREYSFTSHITVFENCAEQYRFFKELEFAPIRESP--------- 752

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTL-----PEHKRKNFITSYCTKNAKLWPAKEY-- 821
                         G ++H+ ++ I              + I  + + N  +   KE   
Sbjct: 753 -----------MLFGTLVHQTIEDIHKTVLRGEEGSISLDAIKGWFSANYAMLSKKERVY 801

Query: 822 ------KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ 875
                 +  LL + R  E          D   E  V   I+  K   I+ G +D I    
Sbjct: 802 LAPSSQQAALLHVLRYYERENGNW----DRIKEAEVE--ISLIKDQYILKGSVDLIRGEH 855

Query: 876 QNIFIFEYKTHHHVPQEIEHIPYT-HIAQLSIYEKILKDSYPNKSLVCLLIYV 927
             + I ++K+      E +      +  QL +Y  ++++    K     L Y 
Sbjct: 856 DTVEIIDFKSEKKPDMEKDRDRLRQYQHQLEVYAHLVEERTGQKVSRLHLYYT 908


>gi|15602381|ref|NP_245453.1| hypothetical protein PM0516 [Pasteurella multocida subsp. multocida
            str. Pm70]
 gi|12720777|gb|AAK02600.1| RecB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1230

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 106/842 (12%), Positives = 237/842 (28%), Gaps = 147/842 (17%)

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +   I  +    +IDE QDT   Q+ +   +           ++      +GD KQ+
Sbjct: 391  GEELAQFIRVQYPFAMIDEFQDTDAQQYHIFSKIYLH------QQTTENGFIMIGDPKQA 444

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F GA+                 A Q  +   L  ++RS   ++  V+ +F   E   
Sbjct: 445  IYKFRGADIF----------TYFQAAEQADARFTLGTNWRSEQRLVNAVNSLF-QFEQGL 493

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                     +   + +         W     +   +C                 +    L
Sbjct: 494  PFLYPQIQFLPVAACQNK----PTFWLNGQQEPPFRCYVGDVGVAKKNSGNLTSAQKQTL 549

Query: 346  ARRIAYTISNMIGT-----------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            A   A +I   + +           +      K++ ++A+ I VLV+  K+   ++   +
Sbjct: 550  ATICARSIQQWLQSAVQHDAIFYSAEAKQEEEKRQPLRAEKIAVLVKDWKEASFVSEALQ 609

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
             +      SV  +D+  + D    ++L  +    L    + + +  + + +F  +  +I 
Sbjct: 610  KVGIA---SVYLSDKSNVFDCHEAQELALILTACLHPFSERNILNAIATRIFALTTREIS 666

Query: 455  KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
            +I         V E    +       +Q ++  +H L               +L    G 
Sbjct: 667  EIKQDEQRWTQVVERFVNYQRIWQ--WQGILVMLHRLF------LDEKIMEKLLSQVGGE 718

Query: 515  QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEV 572
            +Q            L E L       +++ S L+    ++  E      +    +    V
Sbjct: 719  RQTTDLL------HLAELLQEASTLNESAASLLRWFEKQIQGENRQEEQQIRLESERQLV 772

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +I+T+H +KGLE  +V+L         ++ +   +                + +   ++ 
Sbjct: 773  KIVTIHKSKGLEYDLVWLPFIADAPKPNRALLDTYYHHE------------KQQVLWDLN 820

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN---------EKKSNQRTWYD 683
                  +++  + E  RL YV +TRA  Q+++       +          + +  +T   
Sbjct: 821  ETHQTEIEQEQRAEAMRLFYVALTRAKYQVVMALPETFVSHWNCLQYVLTQGAMTQTDVR 880

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                +F        +K+     +   I    S        + +       ++        
Sbjct: 881  AALTAFQQRVVYPDVKIQVEEFEALPIHLSTSIKENSADQVLQCAEFHGNIERNWQVTSF 940

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTNLE-----------------------------SLL 774
             +          +L  +  +     +                               +  
Sbjct: 941  SAISALHEKTMQLLTQAEEEKTPDVSFLLDHKDYDVSLGRNVALVPVAEMAGYSKGYTPF 1000

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
                    G ++H+  +         R           A        + L   +T +L  
Sbjct: 1001 DFPAGTMVGKVLHRYFEKFPLDQPVDRAAVAQMC---QALQLEETWLEPLQTWLTTILNT 1057

Query: 835  PMMTT-------AMSCDSYSEVSVSGKINCP---------------------------KK 860
            P++           + D   E+    K                                 
Sbjct: 1058 PLLREHPVTLSALSAQDCIKEMEFYLKFEHEFQAHKFNQLLQKYRFISAPLQLHTLKQGI 1117

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQLSIYEKIL 911
              ++ G ID +       ++ +YK++       ++ P           +  Q   Y   L
Sbjct: 1118 KGLLRGFIDLVFRYDGQYYLLDYKSNKLGTSPSDYAPAHLQQVMLEQHYDWQYLFYTLAL 1177

Query: 912  KD 913
              
Sbjct: 1178 HR 1179


>gi|154314455|ref|XP_001556552.1| hypothetical protein BC1G_05321 [Botryotinia fuckeliana B05.10]
 gi|150848966|gb|EDN24159.1| hypothetical protein BC1G_05321 [Botryotinia fuckeliana B05.10]
          Length = 999

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 104/649 (16%), Positives = 189/649 (29%), Gaps = 153/649 (23%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           ++A Y+   + + +LD++DL++   +LL+       +       I  +LIDE QDT+L+Q
Sbjct: 173 VHAEYQATLELSNLLDYDDLLVRCVELLR-------LYPSCVANIEAVLIDEFQDTNLVQ 225

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++++R              S + +  VGD  QSIYSF  AE K   R             
Sbjct: 226 FDLMRLFA----------VSQKRITIVGDPDQSIYSFRAAEIKNYKRMITQYP------- 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  ++RS+  IL     V     +    S   T  +  R              
Sbjct: 269 -DTVTISLEENYRSSGAILLTALNVIEQDSSRIAKSLLPTHVVGTRPV------------ 315

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                  L + ++A   A  I   I  ++G           ++ 
Sbjct: 316 -----------------------LRKLATAQKEADWIIQEIQRIMG-------MTGDLLD 345

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D  +L+R    + +I            I+          D + IK L+   R I   +
Sbjct: 346 LNDFAILIRSSALSRIIESSL----GKAGIAYRMVGGLRFYDRIEIKTLLDYLRVINLPD 401

Query: 433 DDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVY-----------EYIQKFANCGISK 480
            + +   ++ +P     E  I   +        T++               K        
Sbjct: 402 HNDALARIINTPSRRIGEVTIKALLEEAEQSKLTLWSLILKSVQGRRATKTKLTASVERN 461

Query: 481 FQHVIKYIHELIHIA-----QFCSPHDFFTLILGAKKGRQQFISRFGN---EVIDVLDEF 532
               +  I   +           S       I+             G+      D + E 
Sbjct: 462 LSVFVDIILTGMKKVADPSNTENSIVKIMEFIIEKTSYETWLEEHRGDITKAQWDNVKEL 521

Query: 533 LNFTLRN--------------------EQNSYSSLQELISELEQYPPTIKRAH-SANHNE 571
           +                          ++++  SL   ++ +       K    + N  +
Sbjct: 522 MTQATDFQELISNGYEDESLPQIDGLKQEDASDSLSRFLANVALASEVTKEEDKTNNTPQ 581

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V I T+H AKGLE P+VF+         H                               
Sbjct: 582 VTISTIHAAKGLEWPIVFIPGAYQGSIPHS------------------------------ 611

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS---NQRTWYDMVYDS 688
                   +    +E  RLLYV MTRA   L +      S ++ +      +   +    
Sbjct: 612 --------RAEDTDEERRLLYVAMTRAKALLNMSCPLKNSLQELTTTCPFLSARGLRAHL 663

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
            +    ++   +               +    +  LER E     ++ +
Sbjct: 664 DYKGPSLRSNTVQCLAQILRRPFPSRESIAESSACLERIEDTYYPLEPE 712


>gi|239626269|ref|ZP_04669300.1| UvrD/REP helicase [Clostridiales bacterium 1_7_47_FAA]
 gi|239520499|gb|EEQ60365.1| UvrD/REP helicase [Clostridiales bacterium 1_7_47FAA]
          Length = 608

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 98/562 (17%), Positives = 186/562 (33%), Gaps = 120/562 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + K L + YEE  +++ +LDF+D+++  + L K+      I      +  +ILIDE QD
Sbjct: 158 EVFKQLYSGYEEQLRRHRLLDFDDMLVMCHQLFKE---RQDILSAWQDKYQYILIDEFQD 214

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + IQ+E+++ L                LF VGD+ QSIY F GA P+ +L  +R     
Sbjct: 215 INRIQYEIVKMLAL----------PENNLFIVGDDDQSIYRFRGARPELMLGFERDYP-- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RS+  I+    ++ +           +   +            
Sbjct: 263 ------DARRLLLDTNYRSSRQIVEAAGRLIAHNRTRFEKDIKAARGL------------ 304

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                W    D              IA  + +            
Sbjct: 305 -------------GRPVDIREWPEPMDESLA----------IAMELRDYASMG------- 334

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
              I  +D+ VL R          L      +Y I     D    L DH  +K++++  +
Sbjct: 335 ---IAYQDMAVLFRTNMGPR----LLIEKLMEYNIPFSMRDTVPNLYDHWIVKNVLSYIK 387

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                    + + ++  P    S D +          ++ Y+          S     I+
Sbjct: 388 AASGDLCRANILSIINRPKRYVSRDALEHQTVDWEAVKSFYQ--------DKSWMLDRIE 439

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--SY 544
            +   + + +  SP      I  A           G E    ++E      + +++   +
Sbjct: 440 QLEYDLLMLKSMSPAAAVNYIRKAVDYDSYLREYAG-ERRMKVEELFEVLDQLQESAGGF 498

Query: 545 SSLQELISELEQYPPTIKRAHSAN---HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            + +   + ++ Y   + +           V +MT+H++KGLE  VV+++D    +  H 
Sbjct: 499 KTYEAWFAHMDAYREQLLKQAQGGNGPEQGVSLMTMHSSKGLEFRVVYILDANEGITPHH 558

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                              K +     EE  R+ YV MTRA ++
Sbjct: 559 -----------------------------------KAVLDQNLEEERRMFYVAMTRAKER 583

Query: 662 LIICKHSNTSNEKKSNQRTWYD 683
           L +       ++K+   R   +
Sbjct: 584 LHVYYVKERYHKKQEVSRFVKE 605


>gi|57169065|ref|ZP_00368192.1| helicase, putative [Campylobacter coli RM2228]
 gi|57019523|gb|EAL56214.1| helicase, putative [Campylobacter coli RM2228]
          Length = 920

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 137/855 (16%), Positives = 256/855 (29%), Gaps = 181/855 (21%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +  ++  D   K  + +  FIK  D +            + L  + +   +  +K    
Sbjct: 241 PKYLQELEDSDVKFSQKRKAFIKALDAYAKELEEYKIANLMNLLSHFSKAKDIIQKDKNT 300

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           L F D+     DL++  D    I +++D  I+H+LIDE QDTS++Q++++R L  +   G
Sbjct: 301 LSFSDISRRVLDLIR-SDFKDMIYFRLDGYISHLLIDEFQDTSVVQYQILRPLIAELVSG 359

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           +      RT F VGD+KQSIY F   + +     +   ++   +        +L +++RS
Sbjct: 360 EGVK-KNRTFFYVGDKKQSIYRFRKGKKELFDLLQTEFKQIQKD--------QLTINYRS 410

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              ++  V+K F                    S    + G V++ E   ++ D     + 
Sbjct: 411 KQILVDFVNKTFQ---------SKIKDYTPQLSLESKKGGFVRVIESQETKVDKDQAKEI 461

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           +                        T+  ++         K + I   DI +L  K  D 
Sbjct: 462 QD----------------------KTLEALLEQ---LKFLKSKNIIYDDICILCWKNNDA 496

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            +I            I        +L                    ++ + + +L     
Sbjct: 497 DMILDFLHE----QDIPAFTQSNILL--------------------ENKACIRVLLEYAK 532

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                D F +   +      +E ++   +   S  Q+V+  I EL       +   F   
Sbjct: 533 YCIFGDKFYLHFLKEMLG--FEPLKLKLDLAKSAVQNVLYLIKELKLDLNDMALIQFIEY 590

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   +                        E  +   + E                 
Sbjct: 591 AKSKDDFLKLL---------------------FEPCTLKIMSEQNR-------------- 615

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                + IMTVH +KGLE   V L+D+ S+   +     +                 +  
Sbjct: 616 ----GINIMTVHKSKGLEFDHVILLDSLSKNNPNNKTIMLEY-DIDQGWELHIKDSYRKA 670

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           ++ +     I  + K+  E+    LYV  TRA D LII K + +             +  
Sbjct: 671 TQESEYKAFIDKITKADYEDDINKLYVAFTRAKDNLIIIKRNASFQSGNYPSYLNTMLDI 730

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
           +     E   +   T+   K+ + A       P      +E T                 
Sbjct: 731 EIQELGEIEIQTNDTHLPQKESFQALMEFEKIPLQDIERKENTSSDE------------- 777

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                                               G   H  +Q +             
Sbjct: 778 ---------------------------------IYFGNAFHFFMQNLKLPQGENFDILCQ 804

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-CDSYSEVSVSGKINCPKKDIIIS 865
               K        +++ L   I  LL N      +       E ++S             
Sbjct: 805 KVSGKFRHFLNHDDFERLFKRIKNLLANAQFQKLIENKKLLKEQALS-----------FQ 853

Query: 866 GRI---DQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
           G I   D +++ +    I +YKT              H  Q+ +Y++ ++     KS   
Sbjct: 854 GEIKQLDLLALGEDEAIIIDYKTG--------LNFNKHKEQVLLYKEAIEKILAKKSTQA 905

Query: 923 LLIYV--SEPKVFII 935
            L+YV   + ++  +
Sbjct: 906 FLVYVLEDKVEIIEV 920


>gi|194335096|ref|YP_002016956.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
 gi|194312914|gb|ACF47309.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271]
          Length = 984

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 124/804 (15%), Positives = 243/804 (30%), Gaps = 154/804 (19%)

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
               +  +DF  +I    + L+  +   +   +      H+++DE QD ++ Q  +IR L
Sbjct: 191 RLNSDQYIDFSLMIRLVVEALEANNTEIYAALESAN---HLMVDEYQDVNISQERLIRGL 247

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                      S   +LF VGD+ QSIY + GA+ + ++   +             S   
Sbjct: 248 Y----------SRLNSLFVVGDDDQSIYGWRGADVRNIIEFDQRYPN--------CSTHT 289

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  +FRST  I++  D+      +   +          ++      G +Q +  +  +  
Sbjct: 290 LSTNFRSTNTIVSTSDRFIQHQLSTARID---------KAPISNSDGNIQHFGNLWFRTK 340

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                                     A  IA  I+ ++GT  I ++G +R +   D  +L
Sbjct: 341 QD-----------------------EAEWIANRINQLLGTKYIETDGSERGLTKSDFAIL 377

Query: 380 VR-----KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           +R      R              +   I+ +      + + L  + L      + S    
Sbjct: 378 MRSVQGGTRNGGAPYHRDYTNALSKADINYIIEAEGSIFERLHARTLRDAMSLLRSPG-- 435

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                                    R E    +           +     ++ + +  + 
Sbjct: 436 -----------------------YPRREAINFFNSNI-LPVFPNADLNKFLEILADWNNQ 471

Query: 495 AQF--------CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ----- 541
                        P      +L A +       +   +V+  L  F    L  E+     
Sbjct: 472 IHRPIGGARRKVYPQLLVHELLEAFRISTT-EFQNHEQVMRDLGVFSGIILDVEKVFVSI 530

Query: 542 ---NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                Y S+   +  + E    T +    +  + V I TVH  KGLE PVVF+VD   Q 
Sbjct: 531 DTGQRYQSMLNFLENVAESGYDTTQVELMSRPDAVTISTVHKMKGLEFPVVFIVDVVQQR 590

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F  K             +  +P+ + Q+     +                 RL Y  +TR
Sbjct: 591 FPGKRSS---------YNGWLPLNLIQNPLSRGLYQS--------NIFGEARLFYTALTR 633

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A   L +   S     ++    + + ++              L +     +      +  
Sbjct: 634 AERFLYVTGSSIQPGLQRPKNPSPFKLIIQG-----------LNDPEVITDTTHLPDNIE 682

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
             E  P   EE++       +I   L  P+K    + Y  +P+  +  G       L+ +
Sbjct: 683 RIEQRPRIDEESMPT--SFTEIKDYLECPMKYKFRKIYGYSPAVPELFG-----YGLTTH 735

Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
              NR    H+L        E   +     +  K+       E +           +  +
Sbjct: 736 TAINR---AHQLFANAAPTREEAGEITEDVFHLKHVFPSRDPEREGPYERAKN--ASKRL 790

Query: 838 TTAMSCDSYSE-----VSVSGKINCPKKDIIISGRIDQISISQQ-----NIFIFEYKTHH 887
               +   Y E      S+  +      + +I+G ID +             + ++K+  
Sbjct: 791 VGNYAEG-YPEDFVQSRSLEQRFEIKANNALITGSIDLLLREDNNGNILEARVIDFKSMD 849

Query: 888 HVPQEIEHIP-YTHIAQLSIYEKI 910
               ++          Q+ +Y   
Sbjct: 850 FPEGQLNPFFWINLSLQVQLYAYA 873


>gi|213691705|ref|YP_002322291.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|322691505|ref|YP_004221075.1| ATP-dependent nuclease subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|213523166|gb|ACJ51913.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320456361|dbj|BAJ66983.1| putative ATP-dependent nuclease subunit A [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320457796|dbj|BAJ68417.1| putative ATP-dependent nuclease subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 1371

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 116/735 (15%), Positives = 240/735 (32%), Gaps = 70/735 (9%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
                 L+E+    +          V  +     L     + +       +  A+    +
Sbjct: 286 AELRSCLDEALASCHDAHTAQQDTVVKSLRMICDLPQYLRSESWNAVRARVIDANPLDVL 345

Query: 63  EERFSLLSSFFL--TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK-- 118
            +R ++  +  L  T    P+ + + + + +    +K  +   Q +     ++ ++    
Sbjct: 346 PKRITVGKTAILKSTAIAVPKDSELGRRLAETVRGIKGIVSDLQSKLAFTAEQVDSLDEV 405

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +     + L    +  Y   K++  V +F D+     D +++ D    +  +I  +  
Sbjct: 406 AARRLEGLIALITTFDQQYALVKQQESVAEFSDVAFWALDAMQQPD----VAKRIGAQWR 461

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           +I +DE QD + +Q   IR ++ +             L  VGD KQSIY F  A P+   
Sbjct: 462 YIYVDECQDNNALQNRFIREISRN----------AAKLTMVGDVKQSIYGFRDASPE--- 508

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                      +        EL +++RS  +I+T V+ VF+        + D        
Sbjct: 509 ----EFGDICNSVTDASHRRELWVNYRSVPEIITFVNTVFARLMTPNMGATDYLKEQLQI 564

Query: 299 --SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             + + G+    +  E +VS      +    +     D    +++ ++ A +    +  +
Sbjct: 565 GSAKQAGKPFDAEAIELLVSNAAPDLSADVVA-----DENGTDTAPTVRAGKDELQVDMI 619

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +        G +      DI VL R       +            I V       L    
Sbjct: 620 VRRVQELCEGPRAQYSYGDIAVLARGATHFADLADRL----YRVGIPVEVQGVGDLYRQP 675

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            I+  +   R I ++  D+  V +L++    F++DD+ +I         +++ +++ A  
Sbjct: 676 EIQIALDWLRIIANRHQDVPLVAVLRTM--GFTDDDLARIRLHNR--GWLFDVMRRIAES 731

Query: 477 GIS--------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521
           G                K    ++        A+  S  D    +           +   
Sbjct: 732 GGEADESAVLSSDVLLAKISAFLRIYDAACDYARVHSLSDSLWHLYAVSGLFDFAGNMPE 791

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA---NHNEVRIMTVH 578
           G      L   +             LQ  +  +  +  +     ++     N V IMT+H
Sbjct: 792 GERRQANLRLLVEKADAFAVAQERGLQPFLDAVTMWSASGSGEEASTVPTKNAVHIMTIH 851

Query: 579 TAKGLESPVVFLVDTGSQVFSHKH----------IKKMHIMPSLNDDPGIPIWIPQSKSR 628
            +KGL+ PVV L+   + + +              +      +   +  + +   ++  R
Sbjct: 852 KSKGLQWPVVILMGASNNLLTGSRTAVVRTIAHQTRNEDGAVAEYGEGALSLVDQRNHVR 911

Query: 629 NNIVSDLIKHLKKSTQE--EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
            +     +   +    E  E  RLLYV MTRA  +LII            N         
Sbjct: 912 VDTFQRAVIDSRAKELEAAEELRLLYVAMTRAERKLIIAGSYRPGKNDDGNLNLRTMAQG 971

Query: 687 DSFHNDERVKKIKLT 701
            +   D R    +  
Sbjct: 972 IALSGDGRTIDPRTV 986



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 79/320 (24%), Gaps = 56/320 (17%)

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
                RA            +         +  +         R+        +      A 
Sbjct: 1039 AATGRAITIRFCSAAPEPTTTMNERTDGYGYINKRIDVTGLRLPDEPPRMPVVVSSSKAR 1098

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
             W     E+   + +       D+   P  +     +D  +               +   
Sbjct: 1099 SWMIDDAESISDDTDSLAVLPSDDAAAPIAMLEDNLDDWKQRRE----AHSGFFIPDFMK 1154

Query: 773  LLSD--NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNL 824
             +SD        G  +H +L++     E  R+               N  + P   +  L
Sbjct: 1155 KVSDVEPSASEVGTAVHNVLELFDWGTEPFREQCEAELRNIVDRLEANHVITPQVAHIVL 1214

Query: 825  LLSITRLL------ENPMMTTAMSCDS--YSEVSVSGKINCP------------------ 858
               +  LL        P+     +     + E   S  I                     
Sbjct: 1215 TRELEGLLWFVTGENCPLSAQIRAHRDTLFREEPFSMLIERNRLNAKVNGSGMAGGVPNT 1274

Query: 859  -----------KKDIIISGRIDQISISQQ--NIFIFEYKTHHHVPQE-----IEHIPYTH 900
                          I++ G ID   +      I +F+YKT    P E      + +   +
Sbjct: 1275 KNDSGNVAEQCDDTIVVRGIIDGYFLDPTAKTITLFDYKTDKMRPGETVKDWSQRLRTEY 1334

Query: 901  IAQLSIYEKILKDSYPNKSL 920
              Q ++Y + L+  Y   ++
Sbjct: 1335 AQQQALYAEALEHRYSGYAV 1354


>gi|208779656|ref|ZP_03247001.1| exodeoxyribonuclease V, beta subunit [Francisella novicida FTG]
 gi|208744617|gb|EDZ90916.1| exodeoxyribonuclease V, beta subunit [Francisella novicida FTG]
          Length = 1216

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 118/766 (15%), Positives = 234/766 (30%), Gaps = 87/766 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++RD     K  ++          +   + +AK++  VLDF+DLI      +KK    
Sbjct: 272 VKELRDLQQEIKQAQAAQFIRKACLQIRESFAKAKEQKGVLDFDDLITKLCQSVKKSPD- 330

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT-------------------------- 200
             +   + ++    LIDE QDT   Q+E++ ++                           
Sbjct: 331 --LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSHSHEGGNLLTNGLNLKDTRL 388

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            ++    + + S   L  +GD KQ+IY F G +    L+ K    +         +   +
Sbjct: 389 REYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEE--------NRWSM 440

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST +++   +++F   +          T I         V      ++     D 
Sbjct: 441 DTNWRSTGEMIKAYNRLFYKQDYQPEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFDD 500

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              P    +    +   +    + L+      I+ ++ T  +            DI +LV
Sbjct: 501 NFKPINYFYYEVAEDDNKSDIDTNLSLWTVNEITRLLNTQKVAE---------NDIAILV 551

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
              K   +I    +        SV  + R  +      K+++AL   I   E+       
Sbjct: 552 ENGKQAKIIQQALQAKNLS---SVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKRA 608

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           L + L          I        + ++   + A                L         
Sbjct: 609 LSTSL--LGGRADKFISYIDENDVSAWDDEIEKA--------------KSLRQQWHKYGF 652

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPP 559
             F   I+     ++          I  L E +       ++    ++    +L      
Sbjct: 653 MAFIMQIIHENFTQRADSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQLNNTATS 712

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             +    ++ N ++I+T+H +KGLE  VVF+                      +    + 
Sbjct: 713 EGELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDSDLKQTVY 772

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                          + +   K   EE  RL YV +TRA  +  I      ++EK    R
Sbjct: 773 KIGKD--------DSVKQQADKEVIEELMRLFYVAVTRAKHRCYIGVAKYNNSEKSPLAR 824

Query: 680 T-----WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                   D +              L  +I      + +  +   +N+  +  +      
Sbjct: 825 FLGYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDTLKANYISK 884

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------KTNLESLLSDNQTFNRGLIIH 787
            E    + L     +            ID             L    + ++  + G I+H
Sbjct: 885 LENDSWEMLSFSKISKSKVQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNILH 944

Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
            +L+           N +     +  K+  A+++ NL L +   LE
Sbjct: 945 NVLEHTDFSLGEIDDNLLQEQMDRY-KVVAAEDFDNLKLWLEECLE 989



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 9/80 (11%)

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899
            +      E      ++  K   ++ G ID I       ++ +YK+++      ++     
Sbjct: 1080 LRDTRLREYDNLTNVSNQKIFGMLHGFIDLIFEYDGKFYVADYKSNYLGDTLEDYNQQAM 1139

Query: 900  --------HIAQLSIYEKIL 911
                    +  Q  IY   L
Sbjct: 1140 QEKNQSSFYDLQYLIYSVAL 1159


>gi|312142659|ref|YP_003994105.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
 gi|311903310|gb|ADQ13751.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
          Length = 1039

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 151/916 (16%), Positives = 313/916 (34%), Gaps = 120/916 (13%)

Query: 31   INKYVSLSMETGNPTILK-KAQTLQQASQTQCIEERFSLL---SSFFLTQKFTPQKNIIT 86
            I    + + E  +    K   ++L++    +   E+  L+      FL++ F   + +  
Sbjct: 210  IEIAEAKAKEFDSSYFRKEFKRSLEKYLNLKSKAEKKELIYKEHKLFLSKHFWNGRKLRG 269

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            + + +   +L+ +    Q+    + ++    ++ +      +  + +   Y++ K K  +
Sbjct: 270  KAVQELKLELENEYALMQE---SLANKAFNKEVIEYEKEVFSFIEKIFEFYDQIKFKEKI 326

Query: 147  LDFEDLIINTNDLLKKRD--------VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              + D+   T   L+  D         + +    +  EI ++LIDE QDTS++QW++++ 
Sbjct: 327  FSYSDISNYTYQYLRDEDLNLLEGQKTTQYFNDLLGIEIEYLLIDEFQDTSVLQWKLLKP 386

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +           ++      VGDEKQSIY + G E +   + + I             + 
Sbjct: 387  II----------NNTANKIIVGDEKQSIYGWRGGEKELFAKLENII---------AAEVA 427

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L L +RS   IL  V+  F        L  D        SS   ++G VQ+        
Sbjct: 428  NLNLCYRSDGKILDFVNIFFKN------LHPDWDYENVDVSSERTELGYVQIL------- 474

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                     S+          +        I  TI   + ++      + +     +I V
Sbjct: 475  --VGGKSSISYFDKDIENAGSAEEKSRLENIQNTIVKDLKSEIASQIEEYKD-DLGNIAV 531

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            + RK  D            +   I  +      + +H A+K +  L +++ +  D L  +
Sbjct: 532  IARKGSDL----EEIAEELDRRNIKYIRGSSNSIIEHEAVKPIYNLLKYLYA-GDYLCLL 586

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
              L+S L   +   +  +   + + E      ++  +  IS+    +  I +L  +    
Sbjct: 587  KFLRSDLIKINHQTLKYLLRNKADIEKALNSEKEIVHQDISEL---LNLIRDLKTMDYEE 643

Query: 499  SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ-- 556
              H+ F  +      + Q         +  +  F     R      +SL  LI  +E+  
Sbjct: 644  VIHNLFNKLALFDIYQDQ------ASALKNIYFFYELLNRF-----NSLNLLIQYVEENK 692

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL---VDTGSQVFSHKHIKKMHIMPSLN 613
                +++    + + V++ T+H AKGL    VF        +   ++     +    S  
Sbjct: 693  ESEELQQLGIEDEDAVKLSTIHKAKGLSFESVFYYFSPKLSAGSNNNSIKIYIDFDESYQ 752

Query: 614  DDPGIPIWIPQ-SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
            +     +   + +    ++  + I+   +    E     YV MTRA + L +  +     
Sbjct: 753  EIEEYLLTNTKYNFILESLSYNFIEEENEKELMEEINNDYVAMTRAVNNLFV--YVENPR 810

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
            + + +Q  +++     F+    +   K  N I+  E   +               ++I+ 
Sbjct: 811  KLRLDQSLFWEGSNYEFYETALLNAAKSNNLIDLIEVKKFGTLDRVDS-------KSIEA 863

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
             +D + + K     I     E   L+                  N+    G I+H  LQ 
Sbjct: 864  EVDLKDLAKYFRFEITETPAEKKSLSY---------------EQNKYRLLGTIVHDYLQH 908

Query: 793  IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS 852
            I    + + K        K   +   K    L+ S+ +           +     +V   
Sbjct: 909  IHYDKKAEHKLAANIISDKYVNILGQKVIAELIDSLQKF--TAANPELFAEKY--DVFTE 964

Query: 853  GKINCPKKDIIISGRIDQISISQ--QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              +    +      RID++ I Q  + I I +YKT      E          QL  Y  +
Sbjct: 965  YTLFDGDEMK----RIDRLMIDQKSKEILIIDYKTGQKYQDE----------QLEDYAML 1010

Query: 911  LK-DSYPNKSLVCLLI 925
            +K     +  +    I
Sbjct: 1011 IKSKLKEDYDIKTEFI 1026


>gi|313675649|ref|YP_004053645.1| uvrd/rep helicase [Marivirga tractuosa DSM 4126]
 gi|312942347|gb|ADR21537.1| UvrD/REP helicase [Marivirga tractuosa DSM 4126]
          Length = 1084

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 134/937 (14%), Positives = 300/937 (32%), Gaps = 97/937 (10%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             + I K  + +   +   ++ +         P    K     +      + +  +     
Sbjct: 231  LDRISKSAFKVIENRGLTLDDFSG--KGRSAPNFFNKISKESKTKNKYELSDLLNATVQK 288

Query: 73   FLTQKFTPQKNIITQE----INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             L           +++    +   S  L +   ++     K    + + +     +  + 
Sbjct: 289  ALESNGETLAAKSSKKKELILQTASEGLIDFFHEAIHFIQKNIGEYRSAENILKNIYLIG 348

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQD 187
            + ++ N   ++ KK+  +    D     N ++      S ++  K+    +H LIDE QD
Sbjct: 349  ITQHFNRKMQDYKKEEGIQFLSDTTQFLNQIIGTDPAESPFVYEKMGSFYDHFLIDEFQD 408

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR-EKRINQK 246
            TS +QW+  + L E+     N +        VGD KQSIY + G + + +L+  K     
Sbjct: 409  TSTLQWQNFKPLVENSLSEGNEN------LVVGDVKQSIYRWRGGDWRLLLKGLKEDISP 462

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               +         L  +FRS  +++   + +FS   +       S    + +++   +V 
Sbjct: 463  AFYHEDA------LSHNFRSKPNVIDFNNDLFSALPS----IIKSNAVNKEKNNFTEEVE 512

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             +            Q       +  + +    E   +    + ++  + +          
Sbjct: 513  YLLQDLPDAYNEVVQQKKNDYPYKGFVELQFFEEEDTEEGEKTSWKENALEKFVEDLERL 572

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            +K  ++ KD+ +LVRK+ +   I       KND           I++D   +     +  
Sbjct: 573  QKSGLKLKDVGILVRKKAEGIEIQDFIEQYKNDNPQKAKEYQYNIISDETLLLSSAHIVN 632

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            F+L+    L    ++      F    I              +  + F        Q    
Sbjct: 633  FLLNCFQYLYTGDIIALSQIKFFYQKIINQDNSLIHEIVKVDGKEDFLPNKFLSVQK--- 689

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                        S  +    ++   K ++        +    L  F +  L         
Sbjct: 690  -------EMMSLSLLEMSEKLIQIFKLKE------IKKEKAYLSAFQDVLLDFGNKG--G 734

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            + + +   EQ   +      ++ +  R+MT+H AKGLE  V  +      +  +  +   
Sbjct: 735  VPDFLEWWEQNNQSYAIKLQSDEHSARLMTIHKAKGLEFKVCMIPLLEWTLSPNALMAPT 794

Query: 607  HIMPSLNDDPGIPIWIPQSK---SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
              + +         ++P  +    ++++ +      +  +  +   LLYV MTRA D L+
Sbjct: 795  LWVNTEGTQFSEIPYLPVKQTSSLKDSVFAHAYWEEEVKSYLDNLNLLYVAMTRAGDALL 854

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            +  H+                          V K+ L  +  ++ W   +        + 
Sbjct: 855  VNTHAKGKT--------------------GYVSKLLLEFAEQQESWQEADRKLAIGFESD 894

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
                   K   +E    + +        N    L       K   NL    S     + G
Sbjct: 895  FTLMAAQKDKEEEVFSKESVNLTYYESHNWQEKL-----QIKHSRNLILDDSGLSKTDLG 949

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLLSITRLLEN-PMMTTA 840
            + +H +   +  + E      I       K  ++  +++Y+++   +   L+    +   
Sbjct: 950  IYVHDIFSQLNDISE------IPVLLEKVKAERMLNSEDYESIQKLVKDNLQKGSDLLPW 1003

Query: 841  MSC--DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
                 D  +EV V           +I  R+D++ +      I ++KT      +      
Sbjct: 1004 FETDWDVKTEVPVLLT-----DGSLI--RLDRVLLKNYEARILDFKTGKKSDHD------ 1050

Query: 899  THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
                QL+ Y   LK     + +   + Y++  ++  +
Sbjct: 1051 --KKQLNFYRNTLKKM-GYEKVTAYIAYLNPLEIVEV 1084


>gi|226326684|ref|ZP_03802202.1| hypothetical protein PROPEN_00537 [Proteus penneri ATCC 35198]
 gi|225204905|gb|EEG87259.1| hypothetical protein PROPEN_00537 [Proteus penneri ATCC 35198]
          Length = 506

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 82/541 (15%), Positives = 162/541 (29%), Gaps = 93/541 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L+++  W L   Q S  +             +  + + L   SQ       
Sbjct: 30  GAGSGKTRVLVHRIAWLLSVEQASPFSIMAVTFTNKAAAEMRHRIEDLIGTSQGGMWIGT 89

Query: 66  FSLLSSFFLTQ---KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--------- 113
           F  L+   L          ++    + + +   ++  +K    +  +   R         
Sbjct: 90  FHSLAHRLLRAHYLDANLPQDFQIIDSDDQYRLIRRIVKSMNLDDKQWPARQGMWYINGK 149

Query: 114 ----FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                    +        T    +   Y+EA  +  ++DF +L++  ++L   +     I
Sbjct: 150 KDEGLRPQHIQTYGNPVETTWLKVYQAYQEACDRAGLVDFAELLLRAHELWLNKP---QI 206

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    +IL+DE QDT+ IQ+  IR L                +  VGD+ QSIY +
Sbjct: 207 LEHYQNRFTNILVDEFQDTNRIQYAWIRMLAGQ----------TGKVMIVGDDDQSIYGW 256

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+ + +                    I L  ++RST++IL   + + +   +  G + 
Sbjct: 257 RGAQVENIQNFLNEFP--------GAETIRLEQNYRSTSNILKAANALIANNSDRLGKN- 307

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               LW             +  S    F+ L +       AR +
Sbjct: 308 --------------------LW-------TEGAEGEPISLYCAFNDLDE-------ARYV 333

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I                     D  +L R    + ++            +       
Sbjct: 334 VGRIKRWQEEGGAL----------TDCAILYRSNAQSRIMEEAL----LQAAMPYRIYGG 379

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYE 468
               +   IKD ++  R   ++ DD SF  ++ +P     +  +  +    R    T++E
Sbjct: 380 QRFFERQEIKDALSYMRLTANRHDDASFERVVNTPTRGIGDRTLDIVRQVARDNQITLWE 439

Query: 469 Y------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                   +  A    +  Q  ++ I  L         H     I+     +  +    G
Sbjct: 440 SALQVIEHKMLAGRATAAIQRFLELIETLASETADMPLHVQTDRIIRDSGLKAMYEQEKG 499

Query: 523 N 523
            
Sbjct: 500 E 500


>gi|297626185|ref|YP_003687948.1| Exodeoxyribonuclease V beta chain RecB [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921950|emb|CBL56510.1| Exodeoxyribonuclease V beta chain RecB [Propionibacterium
            freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1120

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 123/1029 (11%), Positives = 258/1029 (25%), Gaps = 186/1029 (18%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLSM----ETGNPTILKKAQTLQQASQTQCIEE 64
                 + +  DL       ++     +  ++         T  +    L          +
Sbjct: 89   PPTDPDAVDADLCAGEADVLTARLARLRAALADFDRATIATTHEFCARLLDQLGILVDHD 148

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRDRFNTYKMF 120
            RFS         +     +     ++   P L     + + +       +          
Sbjct: 149  RFSSFLDDPDQLRAQVIDDGYLAWMSSGRPPLPLPGAQLIGEMSLSHPDLPLLDAPAGAS 208

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
               ++ +  A  L   +E  K+ + V  + D++      L            +    + +
Sbjct: 209  PDAVSRVEFATNLRREFEARKRSSSVYGYHDMVQRVLMALTDPVTGELAARVLAARYDLV 268

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QDTS  QW+++                   L  +GD +Q+IY F GA+    L  
Sbjct: 269  MVDEFQDTSPAQWQILEH----------AFHGRTRLVVIGDPRQAIYGFRGADLYAYLAA 318

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             R      T          L  ++RS A ++  +  +F         +  +   +  +  
Sbjct: 319  TRRADDYFT----------LNRNYRSDAGVVQGITALFGQANLGTEAARVALGDMHAQHV 368

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                 G              +    Q         L   +    +   +      ++   
Sbjct: 369  EPRLAGA-----------SPKQAAVQIRAVEPQSMLTAPAGRKAIMADLVAEFDRLLNRA 417

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             +      R ++  DI VLVR+R     I            I  V      +    A + 
Sbjct: 418  EVNDGEHWRHLRPSDIAVLVRRRATGQEIQRALIA----AGIPAVFTGGEGVFASSAAQA 473

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
             + L   +      +    +  +PL  +S  ++      +                    
Sbjct: 474  WLVLLSALADPRPSVLLH-LASTPLIGWSPRELADADEDQRT------------------ 514

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRN 539
               ++  +  L            +  +    +   + +++   E +   L          
Sbjct: 515  --ELVTGVRALQATMHDHGVAAVYEELSARYRLPPRLLAQPDGERMLTDLRHLAERLNSA 572

Query: 540  EQNSYSSLQELISELEQ--------YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            E+  +  L  L + L Q              R        V IMT+H AKGL+ PVV L 
Sbjct: 573  ERRHHLDLPALTAWLAQRIDQARTSQDDDSVRRLETERRAVSIMTIHKAKGLQFPVVALP 632

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            D   +    ++ +         D               ++ SD     +   Q E  RL+
Sbjct: 633  DLADRYSGSRYDRGWTTSMLHVDGQLSID------LYTDMSSDREAIKQAEEQAEDLRLV 686

Query: 652  YVGMTRASDQLIICKH--------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
            YV  TRA  +LI                   N   +                      + 
Sbjct: 687  YVAATRAQSRLIAWWANTKFNTSTSPLHRLLNADKDSALPPALNIAGGRHPDQWPLDRQV 746

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
            + + +        +   S          +          +     L + +  +   P  +
Sbjct: 747  VDVVSVPRPSGIASVPRSADLIAGLAARKFHDHIDRDWTRTSYSGLTAGLHGESLPPGSV 806

Query: 758  NPSTIDTK-----------------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
            +P   +                          L         G ++H +L++        
Sbjct: 807  SPRDDEPDLDGILADPGEVDGPVSPSALQPNGLAELPGGTQFGSLVHSVLEITDPASSSL 866

Query: 801  RKNFITSYCTKNAKLWPAKEYKN-LLLSITRLLENPM--------MTTAMSCDSYSEVSV 851
              + + +      +   A+     L   +  +L  P+        +T   + +  +E+  
Sbjct: 867  DSDLLEASARMLRRWPVAQVPAQGLATGLASVLRAPLGDLTNGRSLTDLGAVNRLAELEF 926

Query: 852  SGKINCPKKDIII----------------------------------------SGRIDQI 871
               +    +   +                                        +G ID +
Sbjct: 927  EMPLGRASRHRAVSDLAGLWADRALVPEDDPLVDYGAALAGSAAADRTLSGFLTGSIDAV 986

Query: 872  SISQ------------QNIFIFEYKTHHHV---------------PQEIEHIPYTHIAQL 904
                                + +YKT+                        I   +  Q 
Sbjct: 987  LRVAPAGHAGAADSATAQFCLIDYKTNRIPVRPGDHLGPHSYTRRAMTDAMIGAHYPLQA 1046

Query: 905  SIYEKILKD 913
             IY   L  
Sbjct: 1047 LIYSVALHR 1055


>gi|225025555|ref|ZP_03714747.1| hypothetical protein EIKCOROL_02455 [Eikenella corrodens ATCC
           23834]
 gi|224941701|gb|EEG22910.1| hypothetical protein EIKCOROL_02455 [Eikenella corrodens ATCC
           23834]
          Length = 466

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 83/528 (15%), Positives = 157/528 (29%), Gaps = 111/528 (21%)

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            + H+L+DE QDT+  Q+ +++ LT           +     AVGD+ QSIY++ GA  +
Sbjct: 2   RLLHLLVDECQDTNTCQYTLMKLLTG----------AEGRFTAVGDDDQSIYAWRGANME 51

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +   ++              II+L  ++RS+A IL V ++V +                
Sbjct: 52  NLRLLQQDYPA--------LKIIKLEQNYRSSARILRVANQVIANNPK------------ 91

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                         L+ + +     +  P +              +    A     +I  
Sbjct: 92  --------------LFPKTLWSQYGEGEPVRII---------ACQNEQHEAEYATGSIIR 128

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                          +   D  +L R      L     R       I    +      + 
Sbjct: 129 RRNQSGG-------SLNYADFAILYRSNHQARLFEEALRS----AHIPYRVSGGQSFFEK 177

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-------ETETVYE 468
             IKD++A  R + + +DD +F+    +P     +  +  +                  E
Sbjct: 178 AEIKDILAYLRLLANPDDDPAFLRAATTPKRGIGDATLSSLNRYAAAASCSLYAAANTAE 237

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF----GNE 524
            + +    G    +     +      AQ          +L   +     +       G  
Sbjct: 238 ALAQLPAAGREALRQFTALMQNYQSSAQSEPAGSLIQELLADIRYENYLLEHEEGKSGEI 297

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
               + +   +  R  +    +L EL   +        R+     + V + T+H +KGLE
Sbjct: 298 KWRNVQDLCAWLARKGEQDGKTLIELSQTIALMNLLDSRSKEE-TDTVTLSTLHASKGLE 356

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            P V L      +F H                                      +++   
Sbjct: 357 YPHVILAGCEEGLFPH-----------------------------------ADSVEEGNL 381

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           +E  RL+YVG+TRA   L +        +           + +    D
Sbjct: 382 DEERRLMYVGITRAKHSLTLTHCVKRRRQGGWQFPEPSRFIDEMPQAD 429


>gi|46198946|ref|YP_004613.1| ATP-dependent DNA helicase [Thermus thermophilus HB27]
 gi|46196570|gb|AAS80986.1| probable ATP-dependent DNA helicase [Thermus thermophilus HB27]
          Length = 857

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/934 (14%), Positives = 264/934 (28%), Gaps = 144/934 (15%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
           ++ E +             +         E            + +A +       F  L 
Sbjct: 41  KAAEELRARARKGVEALAREEPGLGGAVREVHGAVFGTIHGFMAEALRHAAP---FLSLD 97

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEK--LKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             F        + +  +E       L E   L+       + R     ++  +     + 
Sbjct: 98  PDFAVVDELLAEALFLEEARSLLYLLGEDPGLEAFLRRLYQGRTLAEAFRPLEGAEGLVR 157

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L     A Y    +   VL   DL      LL+          ++ +   H+L+DE QDT
Sbjct: 158 LFAEALARYRR--RAQEVLGPGDLEALALRLLRHPQA----LARVVERFPHVLVDEYQDT 211

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           S +Q    R+L            +   + AVGD KQSIY F  A  +             
Sbjct: 212 SPLQGRFFRAL----------EEAGARVVAVGDPKQSIYLFRNARLEVFRE--------- 252

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
              G+   ++ L  + R    +   +++  ++    + ++   T             G V
Sbjct: 253 -ALGRAEEVLVLDETRRHARRVAAFLNRFVALFPEGERVAVRPTR---------EAEGRV 302

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           ++          +    +    +      +                              
Sbjct: 303 EVHWVEGGAGLEERRRFEADLLARRLLALKAE---------------------------- 334

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 ++ VLVR R   PL+    R       +  V        + L ++DL    R  
Sbjct: 335 -GYAFGEMAVLVRSRASLPLLERAFRA----RGVPYVLRRGQSFFNRLEVRDLYHALRLA 389

Query: 429 LS-----QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           L       E+  S +  L+SP    +  ++ +   +      + + ++            
Sbjct: 390 LLEGPPGPEERRSLLAFLRSPFVGLNLGEVEEALLREDPLPYLPQAVRDRV--------- 440

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
                   +       P +    ++  +    +   R    +           L      
Sbjct: 441 ------AWLRGLAGKRPLEALKALVRDEVFLSRLSPRARANLDA-------LLLLAGLER 487

Query: 544 YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           +  L+ L+  L                  V ++TVH AKGLE PVV + D          
Sbjct: 488 FPDLEALLEWLRLRALDPEASELPEGGEGVALLTVHAAKGLEWPVVVVYDVARGEPGPAS 547

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
              +     +                     DL + L ++ +EE  RLLYV ++RA D L
Sbjct: 548 PVLVGPEGEVAVAG------------TRAHRDLAQRLAQAQREEAVRLLYVALSRARDVL 595

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
           ++    +                  +        + +            +      P   
Sbjct: 596 LVTGSRSGRESP----------WAQALERLGLGPESQDPLVARHPVPQGWRPPRPAPAAR 645

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
                    + +   +    + SP  +   EP  L            LE           
Sbjct: 646 REGPPAPYAEHLLPPRPLPLVHSPSAHLKAEPKPL---------AEALEGEAVSGFARAL 696

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM---TT 839
           G ++H  L     L     +        + A  +   E + LL  +  LL          
Sbjct: 697 GTLVHYALAR--DLDPEDGRAMRALLHQEVAFPFAEGEKERLLAEVRALLRRYRGMLGRE 754

Query: 840 AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
             + +  +E      +  P K  +  G +D++       ++ +YKT        E  P  
Sbjct: 755 LPALEERAEDYRELPLVLPLKGTVWHGVLDRVYRVGDRWYLDDYKTDR------EVRPEA 808

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
           +  QL++Y + L +++  ++    L+Y+   +V 
Sbjct: 809 YRLQLALYRRALLEAWGVRA-EARLVYLRAGRVH 841


>gi|330990129|ref|ZP_08314109.1| DNA helicase II [Gluconacetobacter sp. SXCC-1]
 gi|329762817|gb|EGG79281.1| DNA helicase II [Gluconacetobacter sp. SXCC-1]
          Length = 668

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 109/716 (15%), Positives = 208/716 (29%), Gaps = 132/716 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    I   +                      +P I         A           
Sbjct: 68  AAEEMRSRIADAVGADRAPGWIGTFHAHGRRQLRTDPDIALLRDGFGIADAEDSRRIVRR 127

Query: 68  LLSSFFLTQKFTPQK----NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF-KS 122
           LL +         Q         + +  +    K+ L   Q     +      Y      
Sbjct: 128 LLQAAMADGALDAQDGDTFRQRVKSVTTRIALFKDDLVLPQQAAAGVDALMQRYPGQTPE 187

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            + +  LA  L   Y+EA ++  + DF DL++     +++ +     R    +  + IL 
Sbjct: 188 DVMAWHLAAALYPAYQEALREANMADFGDLLLWPTVTMQRDED---YRRDWGRRFDAILA 244

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD + +Q++ +R L++D             +FAVGD+ QSIY + GA    +     
Sbjct: 245 DEFQDVNRLQYQWLRLLSQD----------HGEIFAVGDDAQSIYGWRGANVGYIRNFIN 294

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                        S+I L  +FRST  IL+  + V ++       +  + T        +
Sbjct: 295 DFP--------GGSMITLEQNFRSTGHILSAANAVIALDSGRLEKTLFTATGAGDPIETM 346

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              G ++                                    A+ IA+ I   +     
Sbjct: 347 EFSGGLE-----------------------------------EAQGIAFEIGRRLLEG-- 369

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   +   DI +L R    + L+           KI     +         I+D +
Sbjct: 370 --------VAPDDIAILYRFNFMSRLLEEQL----LKAKIPYELVNDTAFWQRGVIRDAL 417

Query: 423 ALGRFILSQED---DLSFVCMLKSPLFNFSEDDIFKICTQRHET-ETVYEYIQKFA---- 474
           AL R     +D   D +F  ++  P        + KI     +   ++++  ++      
Sbjct: 418 ALLRLASCPDDMHSDEAFRRVINQPARGVGAKTLAKIEAVAEQDYVSLFQAAEQLFGSAR 477

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEF 532
                + +  +  I E I  +      +    +L        + +    G   ++ L+E 
Sbjct: 478 GRSADRVRTFLSTIRE-ISASGDAPLAERIRELLDRTGYADMYRAAGEDGRAALENLEEL 536

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           +   +            L    +          ++    VR+MT+H AKGLE   VFL+ 
Sbjct: 537 VGLCVEFAT--------LADLFDHAALGSVSGQASGEGRVRLMTIHAAKGLEYGHVFLMG 588

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
              ++F                                              +E  RL Y
Sbjct: 589 WEDRLFPSATNPD--------------------------------------ADEERRLAY 610

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           V +TR   ++ +   +              ++   +        ++  T S     
Sbjct: 611 VALTRGRRRVAVTWCAWRGGRFAEPSVFLSEIPPRALCRGWLRNRLSGTASSPSGH 666


>gi|227546870|ref|ZP_03976919.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227212832|gb|EEI80713.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|291516123|emb|CBK69739.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Bifidobacterium
           longum subsp. longum F8]
          Length = 1371

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 117/735 (15%), Positives = 240/735 (32%), Gaps = 70/735 (9%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
                 L+E+    +          V  +     L     + +       +  A+    +
Sbjct: 286 AELRSCLDEALASCHDAHTAQQDTVVKSLRMICDLPQYLRSESWNAVRARVIDANPLDVL 345

Query: 63  EERFSLLSSFFL--TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK-- 118
            +R ++  +  L  T    P+ + + + + +    +K  +   Q +     ++ ++    
Sbjct: 346 PKRITVGKTAILKSTAIAVPKDSELGRRLAETVRGIKGIVSDLQSKLAFTAEQVDSLDEV 405

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +     + L    +  Y   K++  V +F D+     D +++ D    +  +I  +  
Sbjct: 406 AARRLEGLIALITTFDQQYALVKQQESVAEFSDVAFWALDAMQQPD----VAKRIGAQWR 461

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           +I +DE QD + +Q   IR ++ +             L  VGD KQSIY F  A P+   
Sbjct: 462 YIYVDECQDNNALQNRFIREISRN----------AAKLTMVGDVKQSIYGFRDASPE--- 508

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                      +        EL +++RS  +I+T V+ VF+        + D        
Sbjct: 509 ----EFGDICNSVTDASHRRELWVNYRSVPEIITFVNTVFARLMTPNMGATDYLKEQLQI 564

Query: 299 --SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             + + G+    +  E +VS      +    +     D    +++ ++ A +    +  +
Sbjct: 565 GSAKQAGKPFDAEAIELLVSNAAPDLSADVVA-----DENGTDTAPTVRAGKDELQVDMI 619

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +        G +      DI VL R       +            I V       L    
Sbjct: 620 VRRVQELCEGPRAQYSYGDIAVLARGATHFADLADRL----YRVGIPVEVQGVGDLYRQP 675

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            I+  +   R I ++  D+  V +L++    F++DD+ +I         +++ +++ A  
Sbjct: 676 EIQIALDWLRIIANRHQDVPLVAVLRTM--GFTDDDLARIRLHNR--GWLFDVMRRIAES 731

Query: 477 GIS--------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RF 521
           G                K    ++        A+  S  D    +           +   
Sbjct: 732 GGEADESAVLSSDVLLAKISAFLRIYDAACDYARVHSLSDSLWHLYAVSGLFDFAGNMPE 791

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA---NHNEVRIMTVH 578
           G      L   +             LQ  +  +  +  +     ++     N V IMT+H
Sbjct: 792 GERRQANLRLLVEKADAFAVAQERGLQPFLDAVTMWSASGSGEEASTVPTKNAVHIMTIH 851

Query: 579 TAKGLESPVVFLVDTGSQVFSHKH----------IKKMHIMPSLNDDPGIPIWIPQSKSR 628
            +KGL+ PVV L+   + + +              +      +   +  + +   ++  R
Sbjct: 852 KSKGLQWPVVILMGASNNLLTGSRTAVVRTIAHQTRNEDGAVAEYGEGALSLVDQRNHVR 911

Query: 629 NNIVSDLIKHLKKSTQE--EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
            +     +   +    E  E  RLLYV MTRA  +LII            N         
Sbjct: 912 VDTFQRAVIDSRAKELEAAEELRLLYVAMTRAERKLIIAGSYRPGKNDDGNLNLRTMAQG 971

Query: 687 DSFHNDERVKKIKLT 701
            S   D R    +  
Sbjct: 972 ISLSGDGRTIDPRTV 986



 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 79/320 (24%), Gaps = 56/320 (17%)

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
                RA            +         +  +         R+        +      A 
Sbjct: 1039 AATGRAITIRFCSAAPEPTTTMNERTDGYGYINKRIDVTGLRLPDEPPRMPVVVSSSKAR 1098

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
             W     E+   + +       D+   P  +     +D  +               +   
Sbjct: 1099 SWMIDDAESISDDTDSLAVLPSDDAAAPIAMLEDNLDDWKQRRE----AHSGFFIPDFMK 1154

Query: 773  LLSD--NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNL 824
             +SD        G  +H +L++     E  R+               N  + P   +  L
Sbjct: 1155 KVSDVEPSASEVGTAVHNVLELFDWGTEPFREQCEAELRNIVDRLEANHVITPQVAHIVL 1214

Query: 825  LLSITRLL------ENPMMTTAMSCDS--YSEVSVSGKINCP------------------ 858
               +  LL        P+     +     + E   S  I                     
Sbjct: 1215 TRELEGLLWFVTGENCPLSAQIRAHRDTLFREEPFSMLIERNRLNAKVNGSGMAGGVPNT 1274

Query: 859  -----------KKDIIISGRIDQISISQQ--NIFIFEYKTHHHVPQE-----IEHIPYTH 900
                          I++ G ID   +      I +F+YKT    P E      + +   +
Sbjct: 1275 KNDSGNVAEQCDDTIVVRGIIDGYFLDPTAKTITLFDYKTDKMRPGETVKDWSQRLRTEY 1334

Query: 901  IAQLSIYEKILKDSYPNKSL 920
              Q ++Y + L+  Y   ++
Sbjct: 1335 AQQQALYAEALEHRYSGYAV 1354


>gi|7007365|emb|CAB75588.1| putative DNA helicase [Prochlorococcus marinus str. PAC1]
          Length = 512

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 131/343 (38%), Gaps = 52/343 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y +A   N  LDF+DL++    LL++ +    IR        H+L+DE QD
Sbjct: 207 KLVAETYRLYRKALAANNALDFDDLLLIPVQLLQQNE---KIRTYWHSRFKHVLVDEYQD 263

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  +     +    + R++F VGD  QSIYSF  A+ + ++  +    K
Sbjct: 264 TNWTQYELIKQLVTNGKDPSSFQDWNNRSVFVVGDADQSIYSFRAADFRILMGFQEDFGK 323

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           ++ +     ++++L  ++RST+ IL   + + SI +        +T              
Sbjct: 324 KSLDNTYDSTLVKLEENYRSTSTILEAANSLISINKERIDKVLRATR------------- 370

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                             +    T   D + +       A  + + +  +        + 
Sbjct: 371 ---------------GEGEPIRLTRCDDEIAE-------AEAVIHRLRIL--------DA 400

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ +L R    +  I          + I  +        D   IKDL+A  R
Sbjct: 401 SNPELNWGDMAILYRTNAQSRAIEDSL----VRWSIPYIVVGGLRFYDRREIKDLLAYLR 456

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYE 468
            +++  D +S + +L  P     +  + ++     +    ++E
Sbjct: 457 LLINPSDSVSLLRVLNVPKRGIGKTTVQRLSDAASQLKIPLWE 499


>gi|254373289|ref|ZP_04988777.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571015|gb|EDN36669.1| exodeoxyribonuclease V beta chain [Francisella novicida GA99-3549]
          Length = 1216

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 117/766 (15%), Positives = 233/766 (30%), Gaps = 87/766 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++RD     K  ++          +   + +AK++  VLDF+DLI      +KK    
Sbjct: 272 VKELRDLQQEIKQAQAAQFIRKACLQIRESFAKAKEQKGVLDFDDLITKLCQSVKKSPD- 330

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT-------------------------- 200
             +   + ++    LIDE QDT   Q+E++ ++                           
Sbjct: 331 --LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSHSHEGGNLLTNGLNLKDTRL 388

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            ++    + + S   L  +GD KQ+IY F G +    L+ K    +         +   +
Sbjct: 389 REYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEE--------NRWSM 440

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST +++   +++F   +          T I         V      ++     D 
Sbjct: 441 DTNWRSTGEMIKAYNRLFYKQDYQPEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFDD 500

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              P    +    +   +    + L+      I+ ++ T  +            DI +LV
Sbjct: 501 NFKPINYFYYEVAEDDNKSDIDTNLSLWTVNEITRLLNTQKVAE---------NDIAILV 551

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
              K   +I    +        SV  + R  +      K+++AL   I   E+       
Sbjct: 552 ENGKQAKIIQQALQAKNLS---SVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKRA 608

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           L + L          I        + ++   + A                L         
Sbjct: 609 LSTSL--LGGRANKFISYIDENDVSAWDEEIEKA--------------KSLRQQWHKYGF 652

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPP 559
             F   I+     ++          I  L E +       ++    ++    +L      
Sbjct: 653 MAFIMQIIHENFTQRADSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQLNNTATS 712

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             +    ++ N ++I+T+H +KGLE  VVF+                      +    + 
Sbjct: 713 EGELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDSDLKQTVY 772

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                          + +   K   EE  RL YV +TRA  +  I      ++EK    R
Sbjct: 773 KIGKD--------DSVKQQADKEVIEELMRLFYVAVTRAKHRCYIGVAKYNNSEKSPLAR 824

Query: 680 T-----WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                   D +              L  +I      + +  +   +N+  +  +      
Sbjct: 825 FLGYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDTLKANYISK 884

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------KTNLESLLSDNQTFNRGLIIH 787
            E    + L     +            ID             L    + ++  + G I+H
Sbjct: 885 LENDSWEMLSFSKISKSKVQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNILH 944

Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
            +L+           N +     +  K+   +++ NL L +   LE
Sbjct: 945 NVLEHTDFSLGEIDGNLLQEQMDRY-KVVAVEDFDNLKLWLEECLE 989



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899
            +      E      ++  K   ++ G ID I   +   ++ +YK+++      ++     
Sbjct: 1080 LRDTRLREYDNLTNVSNQKIFGMLHGFIDLIFEYEGKFYVADYKSNYLGDTLEDYNQQAM 1139

Query: 900  --------HIAQLSIYEKIL 911
                    +  Q  IY   L
Sbjct: 1140 QEKNQSSFYDLQYLIYSVAL 1159


>gi|213583909|ref|ZP_03365735.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 636

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 106/652 (16%), Positives = 218/652 (33%), Gaps = 77/652 (11%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 38  QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 96

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 97  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 148

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 149 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 198

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
           A    +   + ++           V          +    P    W    +S       S
Sbjct: 199 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 248

Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 249 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 306

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
               SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 307 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 363

Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
             +  E  ++ + +  +     +  + V+  +  L       S  +    +L    G ++
Sbjct: 364 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERR 415

Query: 517 FISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                       + E L      L +E      L + I E +    + +    ++ + V+
Sbjct: 416 LTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQ 469

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           I+T+H +KGLE P+V+L          +                      ++    +   
Sbjct: 470 IVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------------HSYEAVLDLSHAE 516

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYD 687
           + I   +     E  RLLYV +TRA     +         S+   E   +Q     ++  
Sbjct: 517 ESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQK 576

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
               D    +  +    ++D       +T +                  Q++
Sbjct: 577 GEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARTLQRL 628


>gi|120603850|ref|YP_968250.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
 gi|120564079|gb|ABM29823.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
          Length = 719

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 102/750 (13%), Positives = 211/750 (28%), Gaps = 142/750 (18%)

Query: 8   SLNESYELIYKDLW-PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + NE  +   + L   +        + +    +   +P  L+                  
Sbjct: 63  AANEMLQRASRLLGYGVQGIAGGTFHAFAYSLLRQYHPARLEGRDLT--IMDGADSVAAI 120

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                     +          +   K+  +   L KS+++ + + +            A 
Sbjct: 121 QHCKDALGIARGD--------KSFPKTQTVLSLLSKSRNKELPLDEVLRREAYHLLVHA- 171

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y E + ++ +LD++DL+     LL++      +   +     +I++DE Q
Sbjct: 172 -DGVSRIGEAYAEYRAEHGLLDYDDLLFEVERLLRE---RPDLLAHLRDRYRYIMVDEYQ 227

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+L+Q  +++ L  +             + AVGD+ QSIY+F GA  + +L   +    
Sbjct: 228 DTNLVQARLVQLLAGE----------GGNVMAVGDDAQSIYAFRGANVQNILSFPQFFP- 276

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     II+L  ++RST  +L + + + +    A      ++              
Sbjct: 277 -------GTRIIKLEENYRSTQPVLDLTNAILAEAPQAYRKHLYTSREDGVLP------- 322

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                        + +  S    A  +   +S ++         
Sbjct: 323 ----------------------------QVVRPLSDLTQASIVVSRVSELL--------- 345

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
             R     +I VL R    +  +      L     I          ++   +KD+MA  R
Sbjct: 346 --RTYPPHEIAVLFRAGFHSYHVEVQLNKL----GIRFRKYGGVRYSEAAHVKDVMAYAR 399

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            +L+  D  +F  +              ++     + +         A     + +  ++
Sbjct: 400 LVLNPLDLPAFQRVAALS-RGVGPKTTLRLYEVARQGDA---AATAHACARYPQLRADLE 455

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
            +  L        P      ++   + R +             L++ +            
Sbjct: 456 LLDRLRKRTPA--PSTLLEEVIEHYQPRLEAAYPDDWPRRQQGLEQLVQIASAY------ 507

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             ++L   +             + + V + T+H+AKGLE   V ++D     F  +H   
Sbjct: 508 --RDLDLFISDLSLEDPGTEEEDRDSVVLSTIHSAKGLEWSAVIILDLVEDRFPSRHAVT 565

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ--LI 663
                                             +    EE  RL+YV  TRA ++  L 
Sbjct: 566 ----------------------------------RADDFEEERRLMYVACTRARERLMLF 591

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +        E  +        V +             T  +           T  P   P
Sbjct: 592 VPSSLYQRGEGGNQPAAPSPFVRELPAALYEEWYESYTGGLQ-------RRDTSRPVARP 644

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                       E        SP+      
Sbjct: 645 AVASTFGCAPRPESAPVPGGPSPVAGAAKL 674


>gi|298345279|ref|YP_003717966.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|298235340|gb|ADI66472.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
          Length = 1191

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 149/1027 (14%), Positives = 295/1027 (28%), Gaps = 180/1027 (17%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDEFIKIRD- 112
             A  T+   E    L +  L+       +++   E+ +         ++ QD      + 
Sbjct: 194  GALGTKREGENAENLVNILLSLANDTNSHLVDLAEMKQTYRSYHAAARRLQDTEGADLNS 253

Query: 113  -RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                       T+     A  +   + E K++  + DF D    T  L+++      +  
Sbjct: 254  TALRNLDTIIDTMEFGCNATNIIQAFNERKRELLMADFSDQTRETVRLVEQ---LPAVGE 310

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
               +    + +DE QDTS+ Q   +  +  D             + AVGD  Q+IY + G
Sbjct: 311  SQRERFQLVFLDEFQDTSVAQMRFLAGIFRDCA-----------VTAVGDPNQAIYGWRG 359

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A    +     I    +           L  S+R+ A IL V +++ +    A  ++ + 
Sbjct: 360  ASAASMEDFGSIFCTDSHQ----LLTRTLSTSWRNDAVILAVSNRISAELTGAPAVAAER 415

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
               +            VQ       Q  S  NP           L Q  +     R    
Sbjct: 416  NIPLNQD---------VQSAISKPLQARSGANPGIVYGIQTLTDLQQSQAVVNFFRLWQA 466

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                + G                   VL R +   P +    R       I         
Sbjct: 467  QRVKLQGEGVPAEKLPTA-------AVLCRAKNAIPGLVESLR----QAGIPYQTRGMQG 515

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE-DDIFKICTQRHETETVYEYI 470
            + +   ++ + A      + E   S + +L       S+   + +   +    + V E  
Sbjct: 516  ILEDPGVRLVRAALEITDNPEKSASLLLLLDRYRLGLSDLQAVGRNRHRFTPYQIVMEGG 575

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDF--FTLILGAKKGRQQFISRFGNEVIDV 528
             + +    ++ + +   + EL   A F +P         L      QQ       +    
Sbjct: 576  AQVSTEAQARLEKLRGILTELKDNAPFATPLVLARLAHRLLDLDIEQQLPGS-SCQAGAY 634

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTI----KRAHSANHNEVRIMTVHTAKGLE 584
            + EFLN      +   ++L   ++ L                 ++  V+I+T+H AKGLE
Sbjct: 635  V-EFLNLVRDFGRTPGATLSGFLNWLSAGEDEEASFADLDFEVDNAAVQIITMHAAKGLE 693

Query: 585  SPVVFLVDTGSQVFSHKHI------KKMHIMPSLNDDPGIP----------IWIPQSKSR 628
               V + +     F           + +   P  +D   +P              +   +
Sbjct: 694  WDWVAVPNLNKSTFPSVRGEIWVTQRDVLPYPLRSDRDHLPELELKTQTLLTATGRVSKK 753

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
              ++    +  +     E +RL YV  TRA  +L++         KK    + + +V   
Sbjct: 754  KGLLETFKEDAEHYALREESRLAYVAFTRAKSRLLLGHCWFERQTKKGRPPSQFFLVEQD 813

Query: 689  FHNDERVKKIKLTNSINKD----------------------------------------- 707
                       L +S   +                                         
Sbjct: 814  PQQHIFSDADSLASSGGANIIQSDSSTVSVVESSEGGAVGAANLLTPFNAETFAQEVARL 873

Query: 708  --EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
              E    +W      + P + E   +   D    P       + D  +      + +D+ 
Sbjct: 874  GIETPDVDWPDTIVTSIPDKIENPNQDRFDAGIWPALPLIQTRPDFAQAVQATEAALDSG 933

Query: 766  GKTNLESLLSDNQTFNR--------------GLII---------HK-------LLQVIFT 795
              +   S  +D +   R              G ++         H        LLQ +  
Sbjct: 934  KFSGGISQDADEEAERRLSQLLHQPQTRLGTGDLLGRISATGMAHLAQDSEGYLLQRLRP 993

Query: 796  LPE-----HKRKNFITSYCTKN-------------AKLWPAKEYKNLLLSITRLLENPMM 837
            LP+      +   ++ ++                    +  ++ + L     R  +  ++
Sbjct: 994  LPQQPSVAARLGTYMHAWIASQLENEDTFIFDAGTEDGFTPEQRELLHKWQQRYEDLELL 1053

Query: 838  TTAMSCDSYSEVSVSGKINCPK-KDIIISGRIDQISISQ--QNIFIFEYKTHHHVPQEIE 894
                       V   G++   +    +I  RID          I+I ++KT         
Sbjct: 1054 RRLRGPQ----VEFDGELYLEEAGGAVIPLRIDAQFEEAQTGKIWIIDWKTGRRP----- 1104

Query: 895  HIPYTHIA---QLSIYEKILKDSYPNKS---LVCLLIYVS----EPKVFIIPQNKLNKAF 944
              P  +     QL IY       +P      ++C  I+++      ++  +         
Sbjct: 1105 -TPENYAQWLHQLGIYRLYWLQEHPETPAEDIICAYIFLNEDNPAKQLLTLQDILDELGI 1163

Query: 945  AEISTKI 951
            AE S  +
Sbjct: 1164 AEYSRNL 1170


>gi|56708443|ref|YP_170339.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670914|ref|YP_667471.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254371067|ref|ZP_04987069.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|56604935|emb|CAG46027.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321247|emb|CAL09410.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569307|gb|EDN34961.1| hypothetical protein FTBG_00823 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|282159635|gb|ADA79026.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 1217

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 119/767 (15%), Positives = 236/767 (30%), Gaps = 88/767 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++RD     K  ++          +   + +AK++  VLDF+DLI      +KK    
Sbjct: 272 IKELRDLQQEIKQAQAAQFIRKACLQIRQDFAKAKEQKGVLDFDDLITKLCQSVKKSPE- 330

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT-------------------------- 200
             +   + ++    LIDE QDT   Q+E++ ++                           
Sbjct: 331 --LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSSHSHEGRNLLTNGLNLKDTR 388

Query: 201 -EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             ++    + + S   L  +GD KQ+IY F G +    L+ K    +         +   
Sbjct: 389 LREYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEE--------NQWS 440

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           +  ++RST +++   +++F   +          T I         V      ++     D
Sbjct: 441 MDTNWRSTGEMIKAYNRLFYKQDYQPEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFD 500

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
               P    +    +   +    + L+      I+ ++ T  +            DI +L
Sbjct: 501 DNFKPINYFYYEVAEDDNKSDIDTNLSLWTVNEITRLLNTQKVAE---------NDIAIL 551

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           V   K   +I    +        SV  + R  +      K+++AL   I   E+      
Sbjct: 552 VENGKQAKIIQQALQAKNLS---SVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKR 608

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            L + L          I        + ++   + A                L        
Sbjct: 609 ALSTSL--LGGRADKFISYIDENDVSAWDDEIEKA--------------KSLRQQWHKYG 652

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYP 558
              F   I+     ++          I  L E +       ++S   ++    +L     
Sbjct: 653 FMTFIMQIIHENFTQRADSKERIITNILHLAELIKVAENKYKHSNQLIKWYRHQLNNTAT 712

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              +    ++ N ++I+T+H +KGLE  VVF+                      +    +
Sbjct: 713 SEGELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDGDLKQTV 772

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                           + +   K   EE  RL YV +TRA  +  I      ++EK    
Sbjct: 773 YKIGKD--------DSVKQQADKEVIEELMRLFYVAVTRAEHRCYIGVAKYNNSEKSPLA 824

Query: 679 RT-----WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           R        D +              L  +I      + +  +   +N+  +  +     
Sbjct: 825 RFLGYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDTLKANYIS 884

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------KTNLESLLSDNQTFNRGLII 786
             E    + L     +            ID             L    + ++  + G I+
Sbjct: 885 KLENDSWEMLSFSKISKSKVQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNIL 944

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           H +L+      +    N +     +  K+  A+++ NL L +   LE
Sbjct: 945 HNVLEHTDFSLDEIDGNLLQEQMDRY-KVVAAEDFDNLKLWLEECLE 990



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899
            +      E      ++  K   ++ G ID I   +   ++ +YK+++      ++     
Sbjct: 1081 LRDTRLREYGNLTNVSNQKIFGMLHGFIDLIFEYEGKFYVADYKSNYLGDTLEDYNQQAM 1140

Query: 900  --------HIAQLSIYEKIL 911
                    +  Q  IY   L
Sbjct: 1141 QEKNQSSFYDLQYLIYSVAL 1160


>gi|315604922|ref|ZP_07879980.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313461|gb|EFU61520.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 1138

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 122/993 (12%), Positives = 260/993 (26%), Gaps = 193/993 (19%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
              +E L++   E  ++ D     +                  Y++ K+    LDF D ++
Sbjct: 183  SAREALEEFGRELEQVGDTNEDARRLLRANRRRIAFLGPIEAYQQRKRDLGFLDFSDQLV 242

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
                ++++  V   +R  + +E   +L+DE QDTS+IQ +++  L  D            
Sbjct: 243  LATRIVREAPV---VREALREEFRAVLLDEFQDTSVIQMDLLSMLFGD-----------H 288

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             + AVGD  Q+IY + GA    +           +        + L  ++R+   IL   
Sbjct: 289  AVTAVGDPNQAIYGWRGASASSLESFLERF---CSAPATPEQTLTLSTAWRNDRAILDAA 345

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            ++V                 +R  ++       +     V+         + E   +   
Sbjct: 346  NRV--------------AAPLREVAAYQEGKCALNAQSPVLVARGGAGGGRVEVAYAPAY 391

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                  +   + R                 +      + + + VL R+RKD   +    R
Sbjct: 392  EDALGVAVDFVQRM---------------RSRAGEGGKRRTVAVLCRRRKDFAYVDAALR 436

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD-- 452
                D  I         L D  A++D+ A                +L       ++    
Sbjct: 437  ----DAGIPTEIVGLGGLLDQGAVQDVRAALELAHDVGASPWLARLLAGIDLGAADLMAL 492

Query: 453  -------------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
                               +        +     E     +   + + + + + +  +  
Sbjct: 493  GDWARVLARAEGASAHQAVLLDAVDAPPQPGWSAEGRPAISEEAVRRVRLLGERLRAVRE 552

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELIS 552
                         I                     LDEF++     E+++  +SL   ++
Sbjct: 553  GVGRTVVEQVERTIRIMGTLDDVIADPLSMGGRAALDEFISVAAAYERDTPGASLGSFLA 612

Query: 553  ELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK---- 604
             L                 +   V+IMTVH +KGLE   V +      VF     +    
Sbjct: 613  YLRMADEREDGLEAPLGEPDPRAVQIMTVHASKGLEWDCVVVFGLSDGVFPSHDKRKTVS 672

Query: 605  --KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST------------------- 643
                  + S        +  P    R ++    +    ++                    
Sbjct: 673  WLDEPPIDSAWLTDASALPHPLRGDRADLPPFALDVEGEAKPSAAYSKWMKGHYGRALGV 732

Query: 644  --QEEYNRLLYVGMTRAS--DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
              + E  RL YV MTRA     L+        +  +   R   +   + F  +  +    
Sbjct: 733  HAEREERRLAYVAMTRARSAQLLVGSWIYRMGSATRQPSRYLMEARDELFGQEPDLVDDS 792

Query: 700  LTNSINKDEWIAYEWSTHHPENT------PLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
            LT   ++  W   +W     E+        +  +   +++            P +   + 
Sbjct: 793  LTRVDDRGVWARGDWRGLGVESVSGAGACLIAPQPDDEEIAQSCAAAASATFPEEPGPSR 852

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQT-FNRG----------------------------- 783
              +   +         L       +     G                             
Sbjct: 853  RLVAGAAAAVEAQIRALAGDRDVYEALAELGDDPAVRDTVALIEEYHLGLETPVVDLWAE 912

Query: 784  ----LIIHKLLQVIFTLPEHKRK-------------NFITSYCTKNAKLWPAKEYKNLLL 826
                  +  LL          R+                 ++  +   L  A        
Sbjct: 913  RVPATSVSALLHDGEEFARDMRRPMPSRPSSLSALGTVFHAWVERELHLASADPASEAFE 972

Query: 827  SI--------------TRLLEN------PMMTTAMSCDS------YSEVSVSGKINCPKK 860
                              LL          +              Y  V++    +    
Sbjct: 973  LATGEDAALAGGDGADEALLTEGERGRLDRLRANFRAFVATRLAGYRAVAIEEAFSVQVG 1032

Query: 861  DIIISGRIDQISIS----QQNIFIFEYKTHHHVPQEIEHIPYTH-IAQLSIYEKILKDSY 915
             + + GRID +            + ++K+   +    +     + + QL +Y +      
Sbjct: 1033 GVSVQGRIDAVFERVGEQGPRFLVVDWKSGAPITAATKPDKIAYFVTQLRLYRRAWAART 1092

Query: 916  PN--KSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
                + +  ++ +++ P    +    L      
Sbjct: 1093 GVGPEEVGAMVAFLAGPSHHTL--ESLEAMLGA 1123


>gi|255527693|ref|ZP_05394550.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|255508606|gb|EET84989.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
          Length = 736

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 105/581 (18%), Positives = 193/581 (33%), Gaps = 121/581 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YEE K++N ++DF+D+ +N   L  +      +     +   ++L+DE QD   +Q 
Sbjct: 226 FRVYEEYKEENQLMDFDDIQLNAQKLFLENP---QLLEAYKKLFKYLLVDEFQDCDGLQI 282

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+++ L               ++FAVGDE Q IY F G+ P  ++      +        
Sbjct: 283 ELLQML-----------GENSSIFAVGDEDQCIYGFRGSRPDCMVNFNEYFKN------- 324

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I L  ++RS  +I+ +  K+    +N      ++    +                 
Sbjct: 325 -GKKIFLQTNYRSNENIVDISKKIIVGNKNRNSKIIEANKKTK----------------- 366

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                         ++ +  D           A  I  TI N+                 
Sbjct: 367 -----------GIINFFNLSD-------ERQQALSICKTIENLCED---------NSYNL 399

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQE 432
           +D  VL R   +   I      L    +I     D+     +H   +DL+A  +  L   
Sbjct: 400 EDFAVLYRTNLENRSIVD----LMLKKEIPFKILDKQYNFFEHFVCRDLIAYLKLSLDIT 455

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D  SF  ++  P    S+  I K+       E+ ++ + +  +  I + ++ ++ +   I
Sbjct: 456 DKESFGRVINKPFRYVSKVHIEKVKK-NINKESCFKILMEIEDLPIFQIKN-LERLENDI 513

Query: 493 HIAQFCSPHDFFTLILGAKKGRQ---QFISRFGNEVI---DVLDEFLNFTLRNEQNSYSS 546
                 S  D    I           ++  R   E     DV++EF             S
Sbjct: 514 LKLNKMSLRDALNFITKDLGYYDYINEYSERLKMESRELKDVIEEFKASASDY-----GS 568

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           +   ++ +E     +K     +   V + T+H  KG+E   VF+++    V  H +    
Sbjct: 569 IIPFLAHIEDVEEKLKNKSKEDSG-VILSTIHGVKGMEFKNVFIINCNEGVIPHINSIP- 626

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                                 EE  RL YVG+TRA D L +  
Sbjct: 627 -----------------------------------KNVEEERRLFYVGVTRAIDNLTLYS 651

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            +    +     R   +        +E  +K+K   +I  +
Sbjct: 652 TNMFKGKSAHMSRFIEESGVYKSIREESTEKLKGMFNIGDE 692


>gi|54024515|ref|YP_118757.1| putative RecB protein [Nocardia farcinica IFM 10152]
 gi|54016023|dbj|BAD57393.1| putative RecB protein [Nocardia farcinica IFM 10152]
          Length = 1113

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 140/1002 (13%), Positives = 277/1002 (27%), Gaps = 142/1002 (14%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            + +E    +          + + +   +S        T     Q +          +  +
Sbjct: 97   AGDELIAHLAAADDTEVALRRTRLLTALSDFDAGTIATTHSFCQRMLDELGLAGERDTAA 156

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L         T   ++      +  P   +++        ++ R               
Sbjct: 157  RLVETVDDLVVTVADDLYLHRYARAQPPFGRKEAHTLALAAVRDRHARLVPDDEDEPGER 216

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            +  A  + A  E  K+   + DF+DL++  +D+L   D       ++       L+DE Q
Sbjct: 217  VAFAAAVRAETERRKRLAGLRDFDDLLVLLHDVLADPDHGEGACARVRARYRVALVDEFQ 276

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +QW+++R           +     TL  VGD KQ+IY+F GAE    L        
Sbjct: 277  DTDPLQWDILRR----------SFHGHTTLVLVGDPKQAIYAFRGAEVLSYLDAVAH--- 323

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     S  EL  ++RS A +L  +D +      A G  E S   +          G
Sbjct: 324  -------ADSRKELTRNWRSDAGLLRALDHL--QGGAALGHPEISVYPVEATRPWSRLSG 374

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              +L   +  +   +         +           + +A  +A  +  ++ +    ++G
Sbjct: 375  PAELITPLRLRCLPRTGAGP---LNKSGFPAVGRQRAKVADDLAADLVRLLESGAEVTDG 431

Query: 367  K-----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                  +R + A DI VLVR R        + R   +   ++ V      +    +    
Sbjct: 432  HGAGAVRRPVAAGDIAVLVRTRTQI----DVVRAALDRVGVASVLAGGTSVFGTPSATHW 487

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            + + R +              +P+  +   +I +            +          + F
Sbjct: 488  LWVLRALEQPHRSDRVRLAAATPILGYPPAEIDR-GGADLVGRVSAQLRDAARLFARAGF 546

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              V + +     +A      +     L   +   Q + +        L     +     +
Sbjct: 547  AAVYERLAAQARLAPRLLGIENGERTLTDLRHIAQLLDQVALADGLGLTALTRWLADRVR 606

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            +  S                 R    +   V+I TVH +KGLE P+V+L       F+  
Sbjct: 607  DPASGAVA----------DRSRRLDRDAAAVQIATVHASKGLEFPIVYLP------FAWD 650

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            + K  +    L  D      +          +      +     E  RLLYV +TRA  Q
Sbjct: 651  NAKNPYPGSLLFHDDDGTRVLDVGGPDAPGYAQRKLRCEAEEAGEELRLLYVALTRAKCQ 710

Query: 662  LIICKHSNTSNEK-------------------KSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            ++       S                      ++        V       E         
Sbjct: 711  VVAWWAPAHSTAAAPLHRMILGRPEGGPHVPDRAPVPADTAAVPMFTAWAEPAGAAISVT 770

Query: 703  SINKDEWIAYEWSTHHPENTPLEREE--------------TIKQLMDEQKIPKKLFSPIK 748
            +++  E +        P    L                  +         +       ++
Sbjct: 771  AVDTAEAVEIRRVRVEPVTGELAAARFDRSLDLLWRRTSYSALTAGAHDLVTDAEPEDVR 830

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
               +EP      T +         +         G ++H +L+ I T          T  
Sbjct: 831  GPGDEPETPALLTDEPAATAAPSLMNDLPYGAEFGTLVHGVLERIDTDAPDLAAEVRTRC 890

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPM----MTTAMSCDSYSEVSVSGKINCPKKD--- 861
                A+L    ++  L  ++  +L  P+    +    + D  SE+     +         
Sbjct: 891  REAAAELLADLDHGVLATALLAVLRTPLGFGTLADIAARDRLSELEFELPLGGGDTPAAR 950

Query: 862  -------------------------------------IIISGRIDQISISQQ-NIFIFEY 883
                                                   ++G ID +         + +Y
Sbjct: 951  AATLGAIAELVRAHLGPADDLSGYPDLLAGLDDVTLRGYLTGSIDAVLRLPGPKFVVVDY 1010

Query: 884  KTHHHVPQE------------IEHIPYTHIAQLSIYEKILKD 913
            KT+     +             E +   +  Q  +Y   L  
Sbjct: 1011 KTNRLGTGDLTVGHYTRERMAAEMLRSHYPLQALLYSVALHR 1052


>gi|70989347|ref|XP_749523.1| ATP-depentend DNA helicase [Aspergillus fumigatus Af293]
 gi|66847154|gb|EAL87485.1| ATP-depentend DNA helicase, putative [Aspergillus fumigatus Af293]
          Length = 1001

 Score =  214 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 102/657 (15%), Positives = 196/657 (29%), Gaps = 152/657 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE     + +LD++DL++   DLL++         +    +  +L+DE QDT+ I
Sbjct: 173 QIYREYESYLATSNLLDYDDLLLRCADLLRRHP-------QCVSNVQAVLVDEFQDTNHI 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E++                 R +  VGD  QSIY F  AE K + R ++         
Sbjct: 226 QYELMNLFA----------VRNRRITVVGDPDQSIYGFRSAEIKNLGRMQQHY------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +  S+I L  ++RS+  IL     V     +        T             GT+ + 
Sbjct: 269 -KDTSVILLEDNYRSSGSILRSAQDVIEQDSSRPSRKLQPTH----------CPGTMPVL 317

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
            ++ +                         A   A+ I   I   +           +++
Sbjct: 318 RKLPT-------------------------AEAEAQWIVLEIKRSMA-------MTGKLL 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L+R    +  I            +           D + IK L+   R I + 
Sbjct: 346 NYSDFAILLRSAALSRHIESEM----GKQGVPYRMVGGLRFFDRVEIKVLLDYLRVISNP 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI-----------S 479
            +  + + ++  P     E+ +  +          ++ +I+  A                
Sbjct: 402 GNSDALLRIINVPSRKIGEESVKTLMNGADTAKIPLWNFIKDVAQGRRSTDKSLSKLTDQ 461

Query: 480 KFQHVIKYIH----ELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEF 532
               ++  I     +L+      +P      ++     R+   +   +        ++E 
Sbjct: 462 GLCTLVGIIESSRQKLLECTDGSAPRKLLEFVIKKLNFREYLTTTYCQNEENRWANVEEL 521

Query: 533 LNF-----------------------TLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
           L                           +       +L + ++ +      +        
Sbjct: 522 LAQAGDVAAPAAEKGQDDSLPEIQGLAQQQAHQGEEALSQFLANVALSTEVLSEDGDQPQ 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            +V I T+H AKGLE PVVF+    + +  H                             
Sbjct: 582 EKVTISTIHAAKGLEWPVVFVPAVYNGIIPHS---------------------------- 613

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                     +    +E  RLLYV MTRA   L +      S  +++       +     
Sbjct: 614 ----------RAEDSDEERRLLYVAMTRAQALLYLSYPLRQSRNEEAATTVTSFLPLKII 663

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
            N  R     L   +               E+  L   +++  L D+Q       +P
Sbjct: 664 ENRFRPLGPSLQEKVVYGIADILRRPRPSFESM-LAAYDSVPSLRDDQWTADGKEAP 719


>gi|159128934|gb|EDP54048.1| ATP-depentend DNA helicase, putative [Aspergillus fumigatus A1163]
          Length = 1001

 Score =  214 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 102/657 (15%), Positives = 196/657 (29%), Gaps = 152/657 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE     + +LD++DL++   DLL++         +    +  +L+DE QDT+ I
Sbjct: 173 QIYREYESYLATSNLLDYDDLLLRCADLLRRHP-------QCVSNVQAVLVDEFQDTNHI 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E++                 R +  VGD  QSIY F  AE K + R ++         
Sbjct: 226 QYELMNLFA----------VRNRRITVVGDPDQSIYGFRSAEIKNLGRMQQHY------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +  S+I L  ++RS+  IL     V     +        T             GT+ + 
Sbjct: 269 -KDTSVILLEDNYRSSGSILRSAQDVIEQDSSRPSRKLQPTH----------CPGTMPVL 317

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
            ++ +                         A   A+ I   I   +           +++
Sbjct: 318 RKLPT-------------------------AEAEAQWIVLEIKRSMA-------MTGKLL 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L+R    +  I            +           D + IK L+   R I + 
Sbjct: 346 NYSDFAILLRSAALSRHIESEM----GKQGVPYRMVGGLRFFDRVEIKVLLDYLRVISNP 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI-----------S 479
            +  + + ++  P     E+ +  +          ++ +I+  A                
Sbjct: 402 GNSDALLRIINIPSRKIGEESVKTLMNGADTAKIPLWNFIKDVAQGRRSTDKSLSKLTDQ 461

Query: 480 KFQHVIKYIH----ELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEF 532
               ++  I     +L+      +P      ++     R+   +   +        ++E 
Sbjct: 462 GLCTLVGIIESSRQKLLECTDGSAPRKLLEFVIKKLNFREYLTTTYCQNEENRWANVEEL 521

Query: 533 LNF-----------------------TLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
           L                           +       +L + ++ +      +        
Sbjct: 522 LAQAGDVAATAAEKGQDDSLPEIQGLAQQQAHQGEEALSQFLANVALSTEVLSEDGDQPQ 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            +V I T+H AKGLE PVVF+    + +  H                             
Sbjct: 582 EKVTISTIHAAKGLEWPVVFVPAVYNGIIPHS---------------------------- 613

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                     +    +E  RLLYV MTRA   L +      S  +++       +     
Sbjct: 614 ----------RAEDSDEERRLLYVAMTRAQALLYLSYPLRQSRNEEAATTVTSFLPPKII 663

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
            N  R     L   +               E+  L   +++  L D+Q       +P
Sbjct: 664 ENRFRPLGPNLQEKVVYGIADILRRPRPSFESM-LAAYDSVPSLRDDQWTADGKEAP 719


>gi|217970262|ref|YP_002355496.1| exodeoxyribonuclease V subunit beta [Thauera sp. MZ1T]
 gi|217507589|gb|ACK54600.1| exodeoxyribonuclease V, beta subunit [Thauera sp. MZ1T]
          Length = 1321

 Score =  214 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 122/874 (13%), Positives = 251/874 (28%), Gaps = 82/874 (9%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDI-NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            +  E+   +   +          +   +   +    +    + A   +  ++T+  E  +
Sbjct: 237  AGGETLAALIGRVGGAHRRARVALSRGWAERARAMKDWLDEELATKAKLWNRTKLHERYY 296

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----------DEFIKIRDRFNT 116
            +            P    +    + +     + L +++          + F         
Sbjct: 297  TPWLEALEQWARNPLDRRLELPDSARHRLTPDGLLEARKADAPAPVLPEHFAAFAGLIED 356

Query: 117  YKMFKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            +        +L +  A  +     E K++     F DL+   +  L      A +R +I 
Sbjct: 357  HDALPDPRTALRIHAATRVGERLAELKRQARSFGFADLLDRLDRALAGP-HGARLRERIL 415

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +    LIDE QDTS +Q+ +  +L                L  +GD KQSIY F GA+ 
Sbjct: 416  TQYPVALIDEFQDTSPLQYRLFDALYR-----AADDDPRSALLLIGDPKQSIYGFRGADI 470

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               L+ +R                 L  +FRS   ++  V+  F+  E+  G        
Sbjct: 471  YSYLQARRA---------TAGRHYMLGTNFRSAHALVGAVNAWFAQAEDRPGAGAFGFRD 521

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                +        V    +    H     P                   + A R A  I 
Sbjct: 522  GADNALPFE---AVAAQGREEVFHADGGVPPALLIHHDLTLRSAGEIRRLFAARCAERIV 578

Query: 355  NMIG---TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
              +              + ++  DI VLVR  ++      + R L+     SV  +D+  
Sbjct: 579  GWLNDEHAGFQAPGKAFQRLRPADIAVLVRSGREAA---EVRRALRRRGLASVYLSDKDS 635

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            +       DL+   R + S  D       L +     S  ++ ++ +         +   
Sbjct: 636  VFASAEAHDLLHWLRAVASPLDARLVRAALATRTVGLSIPELARLASS--------DAAF 687

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
               +          + +  L  + +     D     L   +G ++  +         L E
Sbjct: 688  DARSEQFRALHVAWRELGVLTMLRRSLHLLDLPARWLAEPEGERRLTNFL------HLAE 741

Query: 532  FLNFTLRNEQNSYSSLQELISELEQ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
             L       +   + ++ L   +E               ++ + V+++TVH +KGLE PV
Sbjct: 742  LLQQAGATLEGETALVRWLAMTIEAGGSRAGEEQVVRLESDADLVKVVTVHKSKGLEYPV 801

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V L    S     +   +   +              + +   +     ++  +     E 
Sbjct: 802  VCLPFATSFRAVERRTARYLKLADA---------SGRRRLALDYDDADLERAEAERLRED 852

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             RL YV +TRA   L +   +    + K+ Q       +         +   L       
Sbjct: 853  LRLFYVALTRARHALWMGFAAVRIGKGKACQTHRSAPGHLLAGGAALDEAAWLAPLQALA 912

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS------- 760
               A + +T    +             +   + ++  +      + PY  +         
Sbjct: 913  TAAAQDGATGTEADGRTRIALEAAPPEEAHTLLRRREALPPLQDSAPYRADFERRWSLGS 972

Query: 761  ------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                   ID      L    S      RG         +F     +  +          +
Sbjct: 973  FSALVRDIDPAQMVALPGAGSAPPAPARGTT-----ADLFAAAPDEAGSAAPLAADDYGQ 1027

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
               A   + L + + R   +  +       + + 
Sbjct: 1028 AEAAGAARILPVHVRRPAADEALVRLEEDAALAP 1061



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/260 (8%), Positives = 58/260 (22%), Gaps = 45/260 (17%)

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                    T  +          +     +   + E      +    + +         + 
Sbjct: 995  PPAPARGTTADLFAAAPDEAGSAAPLAADDYGQAEAAGAARILPVHVRRPAADEALVRLE 1054

Query: 753  EPYILNPSTID-----TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-----LPEHKRK 802
            E   L PS  D         T+        +    G  +H +L+ +             +
Sbjct: 1055 EDAALAPSGADGGLALAPPDTDRPPWHRFPRGAFAGDFLHDVLEWLAAEGFALGANEGLE 1114

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-SEVSVSGK------- 854
              +   C +        E    + ++       +           +E+            
Sbjct: 1115 AALRRRCERAGHGERTDELVQWMRALLGARLPSLDAALQDLRVLITEMEFWLPSAHLQAT 1174

Query: 855  ------------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ----- 891
                              +   +   ++ G  D +       ++ +YK++          
Sbjct: 1175 AVDALCRRHLLHAQPRPALPQRELHGMLMGFADLVFEHDGRYWVLDYKSNSLGEDGSAYD 1234

Query: 892  ----EIEHIPYTHIAQLSIY 907
                E     + +  Q +IY
Sbjct: 1235 RAALEAAMAHHRYDVQAAIY 1254


>gi|229826040|ref|ZP_04452109.1| hypothetical protein GCWU000182_01404 [Abiotrophia defectiva ATCC
           49176]
 gi|229789782|gb|EEP25896.1| hypothetical protein GCWU000182_01404 [Abiotrophia defectiva ATCC
           49176]
          Length = 618

 Score =  214 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 96/606 (15%), Positives = 193/606 (31%), Gaps = 111/606 (18%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + ++ +  D K+ +K    E  +++      + + S        + +   YE   K+  +
Sbjct: 116 RSLDLEEGDEKDFIKNVIGEISRVKSEGVAIENYYSLNCPEEAFRDIFKSYEAFMKERGL 175

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D+++  + L         I      +  +ILIDE QD S +Q+E++R +++     
Sbjct: 176 IDFDDMMLLCDKLFNDYPH---ILEAWQSKFKYILIDEFQDVSKLQFELVRKMSKPL--- 229

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    +F VGD+ QSIY F GA+P+ +L  ++I              + L  ++RS
Sbjct: 230 -------NNIFIVGDDDQSIYRFRGAKPEIMLGFEKIYP--------DCKKVLLNENYRS 274

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  IL     V    +        +   +R                 + S  D +     
Sbjct: 275 TESILNFAGSVIHKNKQRFDKKIIAAKGVRGN------------LPVIKSFTDRRTED-- 320

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                                 I   I                 I   ++ ++ R     
Sbjct: 321 --------------------TAIVKDIIKSHEAG----------IPFSEMAIVYRTNIAA 350

Query: 387 PLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
             +         +Y I  +  +    + +H   K++M              F+ ++  P 
Sbjct: 351 RPVVVKL----IEYNIPFIMKEMAPSIYNHFIAKNIMDYLEIANGDRARSRFLNIMNRPN 406

Query: 446 FNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
              + + +   +   + + E V       A  G +     I  +   +      SP    
Sbjct: 407 RYLTRESLADAVVLNKDKVEYVSFIKWTAAYKGRNWMAERINTLQFHLAKLAELSPFGAI 466

Query: 505 TLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQNSYSSLQELISELEQYP----P 559
             I       +          ID      +   +      +++L+E    +E +      
Sbjct: 467 HYIRKVIGYDKFLTDYADERHIDADELFEILEEIEEAAKPFNTLKEWKESIEDFNKKQKE 526

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             ++  + + + V I T+H  KGLE   V++ +    +                      
Sbjct: 527 EFEKNKNTDRDAVVISTMHGCKGLEFEKVYIPEVVEGIIP-------------------- 566

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                            K +++S  EE  RL YV +TRA  +L+I    N   + K    
Sbjct: 567 ---------------YKKAIRQSDIEEERRLFYVAITRAKKELMITYPKNLYGKDKEVSP 611

Query: 680 TWYDMV 685
              + +
Sbjct: 612 FLREYL 617


>gi|270307688|ref|YP_003329746.1| UvrD/REP helicase [Dehalococcoides sp. VS]
 gi|270153580|gb|ACZ61418.1| UvrD/REP helicase [Dehalococcoides sp. VS]
          Length = 972

 Score =  214 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 142/883 (16%), Positives = 270/883 (30%), Gaps = 142/883 (16%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
             ++    + +K++ + +    D       F +  A       L        +++  +DF
Sbjct: 142 RAQNNSYFDTIKQASEAWKTTNDELL---DFNAVAAEDQDVGDLLIRIRSGLREDQYIDF 198

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
             +I +  D ++               + HI++DE QD +  Q E++R L          
Sbjct: 199 SLMIRDVVDSIRANVPG---LENGIGNLRHIMVDEYQDVNPCQEELVRLL---------- 245

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
           H   +TLF VGD+ QSIY++ GA+   +L  +   +          ++  L  +FRSTA 
Sbjct: 246 HQRSQTLFVVGDDDQSIYAWRGADVSNILGFQGRYRNS--------TVHTLSQNFRSTAP 297

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+   D   ++      ++++   +               LW    S             
Sbjct: 298 IVQASDSFAAVLLGPSRIAKNPAASTNLIPQ-----DLRVLWFPDRSTE----------- 341

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL- 388
                           A  +A  I +++GT     NG  R +   D  VL+R  +     
Sbjct: 342 ----------------AGWVAARIRDLLGTAY-NDNGNIRGLTPADFAVLMRSTRQAEQD 384

Query: 389 ---ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS-QEDDLSFVCMLKSP 444
                        + +I           D      L +    + +   D  +      + 
Sbjct: 385 GVPRHTAFTTALENLRIPFSLEAGGGPFDRPQTAVLRSTFELLRNVPLDRNAVQQHFNNE 444

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
           +     D  F    +     +   +  + ++    + Q ++  + E  +IAQ     D  
Sbjct: 445 VILAYPDADFTALARVLTDWSRRIHRPQGSSRIRLRPQQLVYDLLEAFNIAQTNFGDDIM 504

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             I        + I            E +  ++ + Q     L  L +  E         
Sbjct: 505 RDI----GLFSRMIMDV---------ETVYMSVDSRQRFSEVLNFLQNAAETGYDVSTDD 551

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                + V + TVH  KGLE P VF+VD  +  F  +       +P              
Sbjct: 552 VLQRPDAVTVSTVHKMKGLEFPCVFIVDVEAHRFPKRRSSYSGWLPPGV----------- 600

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                 + S + +   +ST +E  RL Y   TRA   L +    N    ++  +R+ Y +
Sbjct: 601 ------MTSAINRGAYQSTPDEEIRLFYTAATRAERYLHVSGAENLPQARRPARRSPYAL 654

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
              +     +         +               + TP  R E         +I   L 
Sbjct: 655 QLATHPAVVQNAGGLPPGIV---------------QATPRRRVEDADYPTSFTEIKYYLQ 699

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH----KLLQVIFTLPEHK 800
            P    + + Y LNP   +  G                G  +H    KL ++    P  +
Sbjct: 700 CPRGYQLRQRYGLNPVIPEMFG---------------YGQTVHTSIQKLHELYPNTPPSQ 744

Query: 801 RKNFITSY----CTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSYSEVSVSGK 854
            +     +         +                  +        +   D   E  V   
Sbjct: 745 DQVEQVVFDTFHLKHVPQSGDPVNRPGAYENSRNRAVEIAEDYVASFGADFERERQVEAV 804

Query: 855 INCPKKDIIISGRIDQISISQQ-----NIFIFEYKT--HHHVPQEIEHIP-YTHIAQLSI 906
              P  + +ISG ID +    +     +  I ++KT      P E + +       Q+ +
Sbjct: 805 FEIPTSNCVISGSIDLLLHEDEHGEILHAEIIDFKTMEGGEAPAENDDLDWTELALQVQL 864

Query: 907 YEKILKDSYPNKSLVCLLIYVSEPKVFIIP--QNKLNKAFAEI 947
           Y +         +    +  + + +   +P  Q  +N A + I
Sbjct: 865 YARAADQVMGQNTRTGSVHLLKDNQRIEVPITQEAVNAALSNI 907


>gi|134301565|ref|YP_001121533.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049342|gb|ABO46413.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 1217

 Score =  214 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 118/767 (15%), Positives = 234/767 (30%), Gaps = 88/767 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++RD     K  ++          +   + +AK++  VLDF+DLI      +KK    
Sbjct: 272 VKELRDLQQEIKQAQAAQFIRKACLQIRQDFAKAKEQKGVLDFDDLITKLCQSVKKSPE- 330

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT-------------------------- 200
             +   + ++    LIDE QDT   Q+E++ ++                           
Sbjct: 331 --LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSSHSHEGRNLLTNGLNLKDTR 388

Query: 201 -EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             ++    + + S   L  +GD KQ+IY F G +    L+ K    +         +   
Sbjct: 389 LREYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEE--------NQWS 440

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           +  ++RST +++   +++F   +          T I         V      ++     D
Sbjct: 441 MDTNWRSTGEMIKAYNRLFYKQDYQPEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFD 500

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
               P    +    +   +    + L+      I+ ++ T  +            DI +L
Sbjct: 501 DNFKPINYFYYEVAEDDNKSDIDTNLSLWTVNEITRLLNTQKVAE---------NDIAIL 551

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           V   K   +I    +        SV  + R  +      K+++AL   I   E+      
Sbjct: 552 VENGKQAKIIQQALQAKNLS---SVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKR 608

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            L + L          I        + ++   + A                L        
Sbjct: 609 ALSTSL--LGGRADKFISYIDENDVSAWDDEIEKA--------------KSLRQQWHKYG 652

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYP 558
              F   I+     ++          I  L E +       ++    ++    +L     
Sbjct: 653 FMAFIMQIIHENFTQRADSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQLNNTAT 712

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              +    ++ N ++I+T+H +KGLE  VVF+                      +    +
Sbjct: 713 SEGELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDGDLKQTV 772

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                           + +   K   EE  RL YV +TRA  +  I      ++EK    
Sbjct: 773 YKIGKD--------DSVKQQADKEVIEELMRLFYVAVTRAEHRCYIGVAKYNNSEKSPLA 824

Query: 679 RT-----WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           R        D +              L  +I      + +  +   +N+  +  +     
Sbjct: 825 RFLGYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDTLKANYIS 884

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------KTNLESLLSDNQTFNRGLII 786
             E    + L     +            ID             L    + ++  + G I+
Sbjct: 885 KLENDSWEMLSFSKISKSKVQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNIL 944

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           H +L+           N +     +  K+  A+++ NL L +   LE
Sbjct: 945 HNVLEHTDFSLGEIDGNLLQEQMDRY-KVVAAEDFDNLKLWLEECLE 990



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899
            +      E      ++  K   ++ G ID I   +   ++ +YK+++      ++     
Sbjct: 1081 LRDTRLREYGNLTNVSNQKIFGMLHGFIDLIFEYEGKFYVADYKSNYLGDTLEDYNQQAM 1140

Query: 900  --------HIAQLSIYEKIL 911
                    +  Q  IY   L
Sbjct: 1141 QEKNQSSFYDLQYLIYSVAL 1160


>gi|193214838|ref|YP_001996037.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
 gi|193088315|gb|ACF13590.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110]
          Length = 700

 Score =  214 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 107/665 (16%), Positives = 209/665 (31%), Gaps = 127/665 (19%)

Query: 8   SLNESYELIYKDLWPL-PYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E                Q    + +    +       +  A+           EE  
Sbjct: 88  AAQEMLARAAAICDSRCSQIQGGTFHAFAHKLLRLHASQ-IGLAENFT-VLDQADAEETL 145

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
            ++ +         +K    +        L   +  S+++  ++         +   L+ 
Sbjct: 146 DIVRTAL--GFNKKEKRFPKKRT------LATVISTSRNK--QLPIELVVEAQYPHFLSF 195

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
               ++L   Y E K+ N +LDF+DL+    DL           ++I   + ++++DE Q
Sbjct: 196 AEEIEFLAKKYREYKRANALLDFDDLLTELRDLFLNFPELG---HQISSSLRYVMVDEYQ 252

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+L+Q E++   +             + + AVGD+ QSIY+F GA  + +L       +
Sbjct: 253 DTNLVQAELVAHFSA----------VHKNVMAVGDDAQSIYAFRGANYRNILDFPNQFPE 302

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I+L  ++RST +IL++ + V +  +     +  S        + +    
Sbjct: 303 --------CKLIKLEENYRSTPEILSLTNFVINRAKEKFTKTLFSRKPEGELPAIVSAPD 354

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                                   R IA  I  +          
Sbjct: 355 -----------------------------------ERFQTRFIAQRILELREEG------ 373

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +  ++I VL+R  +D+  +    R       I  V      + +   IKD +A  +
Sbjct: 374 ----VPLREIAVLMRNGRDSYALELELR----KRNIPFVKFGGQKVVEAAHIKDFLAYLK 425

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            I +  D +S+  +L+  L         ++     ++ + YE          +K+   +K
Sbjct: 426 LIYNPRDVISWNRVLQ-LLEGVGPKTAKQVIEWVKDSGSPYEIG---GVKMSAKYAASLK 481

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLRNEQN 542
            + +L+                         +     E        L+ FLN     +  
Sbjct: 482 NLGDLLGSLSSGKKS-LGETAAAVMNYYLPLMHEKYYEDFPKREKDLENFLNIIANYQNL 540

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                +  +  +E            +   + + T+H+AKGLE   VFL++    V   K 
Sbjct: 541 ETLLAELALDPIELTAIET-EPAKPDEQPMTLSTIHSAKGLEWRTVFLINMLDGVLPSK- 598

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                  ++ +E  RLLYV MTRA   L
Sbjct: 599 ---------------------------------YAVDDAASLDEELRLLYVAMTRAKSLL 625

Query: 663 IICKH 667
            +C  
Sbjct: 626 YVCYP 630


>gi|55980967|ref|YP_144264.1| ATP-dependent DNA helicase [Thermus thermophilus HB8]
 gi|55772380|dbj|BAD70821.1| ATP-dependent DNA helicase [Thermus thermophilus HB8]
          Length = 857

 Score =  214 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 135/934 (14%), Positives = 264/934 (28%), Gaps = 144/934 (15%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
           ++ E +             +         E            + +A +       F  L 
Sbjct: 41  KAAEELRARARKGVEALAREEPGLGGAVREVHGAVFGTIHGFMAEALRHAAP---FLSLD 97

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEK--LKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             F        + +  +E       L E   L+       + R     ++  +     + 
Sbjct: 98  PDFAVVDELLAEALFLEEARSLLYLLGEDPGLEAFLRRLYQGRTLAEAFRPLEGAEGLVR 157

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L     A Y    +   VL   DL      LL+          ++ +   H+L+DE QDT
Sbjct: 158 LFAEALARYRR--RAQEVLGPGDLEALALRLLRHPQA----LARVVERFPHVLVDEYQDT 211

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           S +Q    R+L            +   + AVGD KQSIY F  A  +             
Sbjct: 212 SPLQGRFFRAL----------EEAGARVVAVGDPKQSIYLFRNARLEVFRE--------- 252

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
              G+   ++ L  + R    +   +++  ++    + ++   T             G V
Sbjct: 253 -ALGRAEEVLVLDETRRHARRVAAFLNRFVALFPEGERVAVRPTR---------EAEGRV 302

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           ++          +    +    +      +                              
Sbjct: 303 EVHWVEGGAGLEERRRFEADLLARRLLALKAE---------------------------- 334

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 ++ VLVR R   PL+    R       +  V        + L ++DL    R  
Sbjct: 335 -GYAFGEMAVLVRSRASLPLLERAFRA----RGVPYVLRRGQSFFNRLEVRDLYHALRLA 389

Query: 429 LS-----QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           L       E+  S +  L+SP    +  ++ +   +      + + ++            
Sbjct: 390 LLEGPPGPEERRSLLAFLRSPFVGLNLGEVEEALLREDPLPYLPQAVRDRV--------- 440

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
                   +       P +    ++  +    +   R    +           L      
Sbjct: 441 ------AWLRGLAGKRPLEALKALVRDEVFLSRLSPRARANLDA-------LLLLAGLER 487

Query: 544 YSSLQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           +  L+ L+  L                  V ++TVH AKGLE PVV + D          
Sbjct: 488 FPDLEALLEWLRLRALDPEASELPEGGEGVGLLTVHAAKGLEWPVVAVYDVARGEPGPAS 547

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
              +     +                     DL + L ++ +EE  RLLYV ++RA D L
Sbjct: 548 PVLVGPEGEVAVAG------------TRAHRDLAQRLAQAQREEAVRLLYVALSRARDVL 595

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
           ++    +                  +        + +            +      P   
Sbjct: 596 LVTGSRSGRESP----------WAQALERLGLGPESQDPLVARHPVPQGWRPPRPAPAAR 645

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
                    + +   +    + SP  +   EP  L            LE           
Sbjct: 646 REGPPAPYAEHLLPPRPLPLVHSPSAHLKAEPKPL---------AEALEGEAVSGFARAL 696

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM---TT 839
           G ++H  L     L     +        + A  +   E + LL  +  LL          
Sbjct: 697 GTLVHYALAR--DLDPEDGRAMRALLHQEVAFPFAEGEKERLLAEVRALLRRYRGMLGRE 754

Query: 840 AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
             + +  +E      +  P K  +  G +D++       ++ +YKT        E  P  
Sbjct: 755 LPALEERAEDYRELPLVLPLKGTVWHGVLDRVYRVGDRWYLDDYKTDR------EVRPEA 808

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
           +  QL++Y + L +++  ++    L+Y+   +V 
Sbjct: 809 YRLQLALYRRALLEAWGVRA-EARLVYLRAGRVH 841


>gi|56964274|ref|YP_176005.1| ATP-dependent DNA helicase UvrD [Bacillus clausii KSM-K16]
 gi|56910517|dbj|BAD65044.1| UvrD/REP family ATP-dependent DNA helicase [Bacillus clausii
           KSM-K16]
          Length = 763

 Score =  214 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 97/664 (14%), Positives = 202/664 (30%), Gaps = 126/664 (18%)

Query: 43  NPTILKKAQTLQQASQTQCIEE---RFSLLSSFFLTQK--FTPQKNIITQEINKKSPDLK 97
                +  + + +    + +           S F T      P K   ++ I      LK
Sbjct: 202 AKAAQEMRERMTEYPGIEPMFAQSLLIRTFHSLFYTMLVHADPSKWHGSKLIKSGQELLK 261

Query: 98  EK------------LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
            +              ++  +    ++     +  ++T      A  L  HYE+A ++  
Sbjct: 262 TQGRALGLDESEFPYDQAATQISWWKNHMIAPEHVETTDPFEEKAALLYEHYEKALRETG 321

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
             DF+D+ +    +L++ +    +  +  +   ++LIDE QD + +Q+E+++ L      
Sbjct: 322 RFDFDDMQLGCLYVLQENN---RLLQRYQERFAYLLIDEFQDINPVQFEIVKLLA----- 373

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                   R +  VGD+ QSIY F G++P+          +  T    +   I L  ++R
Sbjct: 374 -----MPQRNICVVGDDDQSIYRFRGSDPR--------FIRSFTAHYPEAKTIHLVENYR 420

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           S+  I+   ++V +        +  +  T                               
Sbjct: 421 SSHPIIASANRVIAENRTRLEKTLVAQHTSDQLPY------------------------- 455

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                  ++   +       A  I   I  +IG            I   +I VL R    
Sbjct: 456 ---LFFPYNEEEE-------ATMIVEEIKRLIGKG----------ICPSEIAVLYRTSTS 495

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
              +         D  +       F    +   ++  ++  R   ++E     V +LK+ 
Sbjct: 496 VRALVDRL----VDTTLPFSLEQGFACFYERPFVRRALSFLRIGRNEESPYVMVELLKAL 551

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                  D   +  Q+ E  ++ E I         + + +     +   + Q  +P +  
Sbjct: 552 FIKQEHLDQL-LHIQKTERCSLLEAIPFLTELPAFQAKKLKTLPADCRRM-QKMNPSEAL 609

Query: 505 TLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                     +    +        +  D  ++      + E     S    I  +     
Sbjct: 610 AFAEARLGLNETIKKQGQEGNKFEKGSDDFNQLKVAATQFETVE--SFLIHIDHVIAKQQ 667

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             +   + +   ++++T+H +KGLE   VF+V        H +                 
Sbjct: 668 ECQTFQTRHPKSIQLLTIHRSKGLEFSHVFIVGAVEGSLPHDYALDAWREGDDGP----- 722

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                                    +E  RL+YV MTRA  +L I    +   ++    R
Sbjct: 723 ------------------------LQEERRLMYVAMTRAKKELAISAPVHYRGKRAHPTR 758

Query: 680 TWYD 683
               
Sbjct: 759 FVCA 762


>gi|153810489|ref|ZP_01963157.1| hypothetical protein RUMOBE_00870 [Ruminococcus obeum ATCC 29174]
 gi|149833668|gb|EDM88749.1| hypothetical protein RUMOBE_00870 [Ruminococcus obeum ATCC 29174]
          Length = 610

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 95/559 (16%), Positives = 182/559 (32%), Gaps = 119/559 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y EA +    LDF+D+I+   +L  +      I     ++  +IL+DE QD
Sbjct: 159 EVFRQIYQGYREACQSRRKLDFDDMILYCYELFVQ---RKDILEAWQKKFQYILVDEFQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q++++R L +              LF VGD+ QSIY F GA P+ +L   R     
Sbjct: 216 INQLQYDIVRMLAK----------PQNNLFIVGDDDQSIYHFRGARPEIMLNFTRDYP-- 263

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L +++R +  IL+    V    +        +   +            
Sbjct: 264 ------DAETVTLDVNYRCSGQILSAAMHVIGENKKRFSKKLSTPNQVGK---------A 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           VQ+ E    + +                             +   +   +          
Sbjct: 309 VQIREFQNPREEYLA--------------------------VVSELRERMENGE------ 336

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
               + +D  +L+R  ++             + ++     ++   L  H   ++L+A   
Sbjct: 337 ----RLEDTAILLRTNQEA----EGLVGALMERQVPFNMKEKLPNLFQHWICRNLLAYMH 388

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
           F   +++   F+  +  P    S D +    +     E + E+ +             I 
Sbjct: 389 FAAGEKNRKYFLEFMNRPNRYISRDALS--LSSVVSFEELKEFYKDKDWMC-----DRIT 441

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQF--ISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            +   + + +  +P+     I       +     + +     + L E L+          
Sbjct: 442 TLETHLRVLKSLAPYAAINFIRKGMGYEEYLREYAEYRKIKPEELSEILDRLTE-STKGM 500

Query: 545 SSLQELISELEQYP---PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +SL+E  S +E+Y        R        V I T+H  KGLE   V++++         
Sbjct: 501 NSLEEWESYIEEYTEKLEEQARKAEQEREGVLISTLHGVKGLEYEQVYILNVNEGSMP-- 558

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                              K + +   EE  RL YVGMTRA  Q
Sbjct: 559 ---------------------------------YRKAVLEPAIEEERRLFYVGMTRARKQ 585

Query: 662 LIICKHSNTSNEKKSNQRT 680
           L +C       +K+   R 
Sbjct: 586 LALCYVRQQYEKKREPSRF 604


>gi|196018414|ref|XP_002118799.1| hypothetical protein TRIADDRAFT_62806 [Trichoplax adhaerens]
 gi|190578180|gb|EDV18715.1| hypothetical protein TRIADDRAFT_62806 [Trichoplax adhaerens]
          Length = 863

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 129/370 (34%), Gaps = 69/370 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y+   +    +DF DL++N   L  +      I      +  +IL+DE QDT+
Sbjct: 550 LNEIYCEYQNRLENFNAMDFGDLLLNNIRLFNEN---LDICEYYQNKFKYILVDEYQDTN 606

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q+  +R+L++              +  VGD+ QSIY++ GAE   +LR  +       
Sbjct: 607 IAQYLWVRTLSQ----------KHNNICCVGDDDQSIYAWRGAEITNILRFDKDYP---- 652

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L  ++RST  IL++   + S  +N                          
Sbjct: 653 ----DAKVIRLEKNYRSTQHILSLASNLISNNKNRHSKV--------------------- 687

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW    +        +  ++    +           AR IA  I +M+           +
Sbjct: 688 LW----TDQKDGNKVKIINYYDDKEE----------ARAIADEI-DMVER--------LK 724

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  DI +LVR    T        FL     I           D L IKD +   R ++
Sbjct: 725 KTKLSDIAILVRAGYQTRNFEESLNFL----GIPYRIVGSTKFYDRLEIKDCIGYIRLLV 780

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           ++ED+L+F  ++ +P        I  I      +      + K               ++
Sbjct: 781 NKEDNLAFERVVNTPKRGIGNSTIMNILNTAKNSNLSMFEVSKIMINEKKIKGKAADSLN 840

Query: 490 ELIHIAQFCS 499
             I+I +  +
Sbjct: 841 NFINIIEESN 850


>gi|321310205|ref|YP_004192534.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802049|emb|CBY92695.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
          Length = 693

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 116/704 (16%), Positives = 220/704 (31%), Gaps = 124/704 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQ--VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  E    I K      +    +S  +K+    +E              Q      I E 
Sbjct: 70  AATEMKRRIEKLFPDFNFKDSYISTFHKFAKTILEKSGQDFSICFPKRAQYYIRHIISEE 129

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             L    F       +K    ++  K + +   ++        +                
Sbjct: 130 LKLPIKAFHRTAEIVRKLKWAKQGKKITKEDLIEVVSEMARLSEEE---------ILNKF 180

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            L   + +   YE   K    LDF+D+++  + LL+      +IR + D +   IL DE 
Sbjct: 181 PLEWIQNILDSYENLLKGRNQLDFDDILLKADSLLENE----FIRVEWDLQFQAILFDEF 236

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD   +Q+EV++ L+ D           + +F VGD  QSIY F GA  +   R K    
Sbjct: 237 QDIDEVQFEVLKKLSRD----------SQNIFCVGDPDQSIYGFRGAVKESFERFKSHFP 286

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      + +L  ++RST  IL V + + +  +     +  +            + 
Sbjct: 287 --------DTEVFKLEWNYRSTPQILEVANTLINKDKGEFSKNLITNNP---------EG 329

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
             V+ +       +                             +   I N+         
Sbjct: 330 SKVRYFLTNSPSREDD--------------------------HVIDIILNLQKES----- 358

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                +Q ++  +L R       IT      K    I  +  D +       IKD++A  
Sbjct: 359 ----NVQLRNCAILFRNNVFGNQITNKLLAKK----IPFISKDLYEFWRREEIKDMIAYL 410

Query: 426 RFILSQE---DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKF 481
                ++    D +   ++  P          ++    +    ++ E IQ+ ++  + +F
Sbjct: 411 SIAFEKDLIKVDKAIQRVINKPNRGIGLKRQEELRKSAKENGISLRETIQRASDTSVVEF 470

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +++K I  L    +  +  +    IL      +        E  D     LN  L   +
Sbjct: 471 WNLLKKIR-LFAKNEEFNVIEQVQGILNFSGFWEYLKG-KDMEKHDRAKAILNNVLDESR 528

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                ++  I E+ +Y            +++ + T+H AKGLE   VF++         +
Sbjct: 529 CDLEMIKRNIEEMTRYGVE--------KDQLYVGTIHGAKGLEFDHVFVMKVDEGKLPSR 580

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           H                                +    K+S  +E  RL YV  TRA   
Sbjct: 581 HSINP----------------------------IKAEEKESRMKEERRLAYVAFTRAKQC 612

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           L +       N   S  +   D+V       +  +   ++ + +
Sbjct: 613 LYLSSSGGKEN-VSSFAKDVMDLVEYEEEILDLNEPESISPATD 655


>gi|302553996|ref|ZP_07306338.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302471614|gb|EFL34707.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 1044

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 119/802 (14%), Positives = 218/802 (27%), Gaps = 130/802 (16%)

Query: 38  SMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            +          A+ L++A          F  L    L       ++++  E  +     
Sbjct: 142 RLLADATRFQLAARVLREAPGPYPALTRSFPDLVGDLLALDAELAEHLVRPETLRAYD-- 199

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            E L   +   +   D         +  A   L       Y  AK++  +LDF D I  +
Sbjct: 200 AELLLTLRGAKLTNADLRKVPDAAAARRALAELV----TRYRAAKRERDLLDFGDQIALS 255

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L +  +V     + +  E   +L+DE QDTS+ Q  ++  L  D         +   +
Sbjct: 256 AQLARLPEVG----HVLRDEFRVVLLDEYQDTSVAQRVLLAGLFGD--------GTGHPV 303

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            AVGD  Q+IY + GA    +          A   G+  +   L  + RS   +L + + 
Sbjct: 304 TAVGDPCQAIYGWRGASVANLDDFPEHF---AHADGRPATRQALSENRRSGGRLLDLANG 360

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +                       R    G   L               +         L
Sbjct: 361 L-------------------AEPLRALHAGVEALRP---------APGAERDGIVRCALL 392

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
              +     A   A ++++++ T T             +I VL R   D   I       
Sbjct: 393 RTHAEEIDWA---ADSVAHLVRTGTA----------PGEIAVLCRTATDFAEIQGALVA- 438

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                + V       L     I DL+A+   +     + S V +L  P +     D+  +
Sbjct: 439 ---RDLPVEVVGLSGLLHLPEIADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALL 495

Query: 457 CTQRHE--------------------------------------------TETVYEYIQK 472
             +                                                    +    
Sbjct: 496 GRRARRLVAHARVTGEDDPDRRLAEAVEGVDPAEVISLADALDTFLETPLDGHGDDDGLP 555

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
           F+     +F  +   + EL   +      D    +L       +  +          + L
Sbjct: 556 FSPDARVRFARLATELRELR-RSLADPLMDVLHRVLAVTGLEVELSASPHALAARRRETL 614

Query: 530 DEFLNFTLRNEQNS-YSSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLES 585
             FL+           ++L   +  L            A     N V+++T H +KGLE 
Sbjct: 615 SNFLDVAASFAAGDNEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEW 674

Query: 586 PVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            VV +    +  F     ++       ++P         +    S      + D  + +K
Sbjct: 675 DVVVVPGLVTGTFPSSQGREKWTSQGKVLPHALRGDADTLPDVASW-DPRGLKDFHEAMK 733

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
                E  RL YV  TR    L+   H     +KK    + +             +    
Sbjct: 734 DHQHTEELRLGYVTFTRPRSLLLGSGHWWGPTQKKCRGPSAFLQALHDHCAAGYGEIEAW 793

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-NP 759
            +   +DE    E    H    P +                +   P  +  +    L +P
Sbjct: 794 ADEPAEDE----ENPALHQATRPTQVVGPWPLDRGRPWPGARGGRPRPSWPHPGRDLASP 849

Query: 760 STIDTKGKTNLESLLSDNQTFN 781
           +           +  +      
Sbjct: 850 AGTGIPRPCTTRTPSTTRNGRR 871


>gi|254520117|ref|ZP_05132173.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
 gi|226913866|gb|EEH99067.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
          Length = 663

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 104/580 (17%), Positives = 193/580 (33%), Gaps = 118/580 (20%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           ++K+K++ +     +      + FK T+A   +       YEE K KN + DF+DL +  
Sbjct: 124 EDKIKEALNNISFFKTSLKAIEEFKPTMA-KDIFIECLQKYEEYKSKNGLWDFDDLSVKV 182

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             LL+       I  K  +   +IL+DE QD   +Q + ++ + ++            +L
Sbjct: 183 ISLLRDNP---NILLKYRELFKYILVDEFQDCDELQIQFLKMINQE-----------NSL 228

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           FAVGDE Q IYSF G++P+ ++R      K           I L +++RS  +I+ V  +
Sbjct: 229 FAVGDEDQCIYSFRGSKPEYMVRFDETFPK--------AKKIYLSINYRSNDNIVEVSKE 280

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V    ++      +S                                        +    
Sbjct: 281 VIKNNKSRNDKVINSYK-------------------------------DSIGVIKFTRPY 309

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            ++     +A  I  +I ++                  D  VL R   +   +       
Sbjct: 310 DEKIQGDEIAGIIEKSIDDL-----------------SDNAVLYRTNMEARSMIDTF--- 349

Query: 397 KNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
               +I  V  D  +   +H   KD+++  +  ++ +D  SF+ ++  P    S+ ++  
Sbjct: 350 -TRRRIPFVLLDKGYNFFEHFICKDILSYLKLSINIKDKESFLGIINKPFRYISKSNLEY 408

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           I     +       I K         +  +  +   I      S       I+       
Sbjct: 409 IRNSLEDKSPFDILIDKKDTPPYQAKK--LDELRRDILYLNKLSLSGAIQYIVSGLNYID 466

Query: 516 QFISRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            ++  +G      ++E  +         +   ++ EL+  +E+    I          V 
Sbjct: 467 -YLKEYGERYNQSIEELEDIIEEFKSAADGLKTIIELLGHVERVKEKI-EESKEVQEGVI 524

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           + T+H  KG+E   VF+++   +   HK                                
Sbjct: 525 LSTIHGVKGMEFKNVFIINATEETIPHKSSMD---------------------------- 556

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                      EE  RL YVG+TRA D L I         
Sbjct: 557 --------ENIEEERRLFYVGITRAIDNLYIFSPKTQRGR 588


>gi|323943870|gb|EGB39964.1| DNA helicase II [Escherichia coli H120]
          Length = 491

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/506 (15%), Positives = 148/506 (29%), Gaps = 103/506 (20%)

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   +  VGD+ QSIY + GA+ + + R                  I L  ++RST
Sbjct: 6   PAAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP--------GAETIRLEQNYRST 57

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           ++IL+  + +        G                       LW           + +  
Sbjct: 58  SNILSAANALIENNNGRLGKK---------------------LW-------TDGADGEPI 89

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
           S    F+ L +       AR +   I                     +  +L R    + 
Sbjct: 90  SLYCAFNELDE-------ARFVVNRIKTWQDNGGAL----------AECAILYRSNAQSR 132

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           ++            +           +   IKD ++  R I ++ DD +F  ++ +P   
Sbjct: 133 VLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRG 188

Query: 448 FSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSP 500
             +  +  +    R    T+++  ++            S  Q  ++ I  L         
Sbjct: 189 IGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPL 248

Query: 501 HDFFTLILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQ 556
           H     ++     R  +    G      I+ L+E +  T +         L  L + L  
Sbjct: 249 HVQTDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSH 308

Query: 557 YPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                 +       + V++MT+H+AKGLE P VF+V     +F  +              
Sbjct: 309 AALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGG------- 361

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                        EE  RL YVG+TRA  +L +          K
Sbjct: 362 ---------------------------RLEEERRLAYVGVTRAMQKLTLTYAETRRLYGK 394

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLT 701
                    + +         +++ T
Sbjct: 395 EVYHRPSRFIGELPEECVEEVRLRAT 420


>gi|300771529|ref|ZP_07081404.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC
            33861]
 gi|300761518|gb|EFK58339.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC
            33861]
          Length = 1075

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 137/874 (15%), Positives = 276/874 (31%), Gaps = 104/874 (11%)

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            TP++       +     +   LK     F      +     F++ +  L L + L     
Sbjct: 288  TPEEWFQKNTDSSPFYSINPLLKDLCTYFQHQEGSYILATQFQNNVYYLRLMQELALLLR 347

Query: 139  EAKKKNCVLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              ++++  L    LI +   LL        D  ++I  KI     + L DE QDTS+ QW
Sbjct: 348  AYREESGNL----LISDAQHLLTGITEDAGDNPSFIWEKIGNRYRNFLFDEFQDTSVSQW 403

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +  RSL ++     +          VGD KQSIY +   +   +         +A     
Sbjct: 404  KSFRSLVQNAISAPSEEFIDH--LIVGDTKQSIYRWRNGDWSILES-----GAKADLGSH 456

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPE----NAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  L  + RS+  I+   + +++       +   L    T         + +     
Sbjct: 457  HIVDDNLEDNHRSSTAIIEFNNFLYASFPRLLQDKLNLLVSETEKTELLDWWVAKGYHDI 516

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT-DTIFSNGKK 368
            +     +   +      +          ++     +     +    +  T + I    + 
Sbjct: 517  INSIFENVRQNTTPRTPDGGIIKISKFSKQEDEERMFSDSVFREYALKDTIEEIRRIQQD 576

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  ++ VLVR   +   +            I VV  D  ++ +  AIK ++     +
Sbjct: 577  FHYTYSEMCVLVRTNGEAESVVNELMA----AGIPVVSGDALMIANSTAIKLIINTLYIL 632

Query: 429  LSQEDDLSFVCM----LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
            +  +++ S        L   + + + D    +  +      +   +        + +   
Sbjct: 633  VGYDENTSLYKANCISLYHKIRDIAIDPDIFLTIKGKSLSQLSGILPPALCEEANNW--- 689

Query: 485  IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
                             +    I+ A    Q+       E +  L  F + T    +   
Sbjct: 690  -----------MQLPLPELVERIIHAYGLDQK------QEYLAYLLSFRDITANATKQGE 732

Query: 545  SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
              +   ++  E+             N V++MT+H +KGL    VF+      +       
Sbjct: 733  KGILSFLNWWEEDGVRKTLPSPDAANAVQVMTIHKSKGLAFRAVFIPFCNLDL--GGKTN 790

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE---EYNRLLYVGMTRASDQ 661
             +  +P++N        IP         S +  +  +       +   ++YV  TRA D 
Sbjct: 791  GIFWVPAINTPYEALKSIPLKYKDELAKSSVANYYFEENLYSHIDALNMIYVATTRAKDY 850

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            L I        +K SN    + +V       E V  ++                      
Sbjct: 851  LYIGIKEKKDLKKLSNTGDLFQLVLAEHFESEDVYNVEKP-------------------- 890

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
                R +  +       +     S   +DI  P            + N   +L   Q   
Sbjct: 891  ---VRADRKQDSPQTIGMHAYPTSDRLSDIYIPR----------EEKNAAHVLHVGQAGR 937

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            +G I+H +L  I +L   +  +++ S   + A +   K +   L   TR+L++  +   +
Sbjct: 938  QGSILHTILADIKSL--AELPSYLDSLLLEGAIMEDEKTF--FLQEATRVLQHEQLNELL 993

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
               S +E   S +     +  +   R D+I I    + + +YK         +  P  H+
Sbjct: 994  ---SKAEQHFSERSIVSAEGHV--YRPDKILIQDNFVAVIDYKF------TFQEHPE-HL 1041

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             Q+ IY  +L      K +   L Y +   +  +
Sbjct: 1042 DQVRIYMDLLGKM-GYKDVEGYLFYATTNTLKPV 1074


>gi|187931411|ref|YP_001891395.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712320|gb|ACD30617.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 1217

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 118/767 (15%), Positives = 234/767 (30%), Gaps = 88/767 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++RD     K  ++          +   + +AK++  VLDF+DLI      +KK    
Sbjct: 272 VKELRDLQQEIKQAQAAQFIRKACLQIRQDFAKAKEQKGVLDFDDLITKLCQSVKKSPE- 330

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE------------------------- 201
             +   + ++    LIDE QDT   Q+E++ ++                           
Sbjct: 331 --LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSSHSHEGRNLLTNGLNLKDTR 388

Query: 202 --DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             ++    + + S   L  +GD KQ+IY F G +    L+ K    +         +   
Sbjct: 389 LCEYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEE--------NQWS 440

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           +  ++RST +++   +++F   +          T I         V      ++     D
Sbjct: 441 MDTNWRSTGEMIKAYNRLFYKQDYQPEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFD 500

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
               P    +    +   +    + L+      I+ ++ T  +            DI +L
Sbjct: 501 DNFKPINYFYYEVAEDDNKSDIDTNLSLWTVNEITRLLNTQKVAE---------NDIAIL 551

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           V   K   +I    +        SV  + R  +      K+++AL   I   E+      
Sbjct: 552 VENGKQAKIIQQALQAKNLS---SVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKR 608

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            L + L          I        + ++   + A                L        
Sbjct: 609 ALSTSL--LGGRADKFISYIDENDVSAWDDEIEKA--------------KSLRQQWHKYG 652

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYP 558
              F   I+     ++          I  L E +       ++    ++    +L     
Sbjct: 653 FMAFIMQIIHENFTQRADSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQLNNTAT 712

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              +    ++ N ++I+T+H +KGLE  VVF+                      +    +
Sbjct: 713 SEGELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDGDLKQTV 772

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                           + +   K   EE  RL YV +TRA  +  I      ++EK    
Sbjct: 773 YKIGKD--------DSVKQQADKEVIEELMRLFYVAVTRAEHRCYIGVAKYNNSEKSPLA 824

Query: 679 RT-----WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           R        D +              L  +I      + +  +   +N+  +  +     
Sbjct: 825 RFLGYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDTLKANYIS 884

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------KTNLESLLSDNQTFNRGLII 786
             E    + L     +            ID             L    + ++  + G I+
Sbjct: 885 KLENDSWEMLSFSKISKSKVQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNIL 944

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           H +L+           N +     +  K+  A+++ NL L +   LE
Sbjct: 945 HNVLEHTDFSLGEIDGNLLQEQMDRY-KVVAAEDFDNLKLWLEECLE 990



 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899
            +      E      ++  K   ++ G ID I   +   ++ +YK+++      ++     
Sbjct: 1081 LRDTRLREYGNLTNVSNQKIFGMLHGFIDLIFEYEGKFYVADYKSNYLGDTLEDYNQQAM 1140

Query: 900  --------HIAQLSIYEKIL 911
                    +  Q  IY   L
Sbjct: 1141 QEKNQSSFYDLQYLIYSVAL 1160


>gi|148242655|ref|YP_001227812.1| exodeoxyribonuclease V beta chain [Synechococcus sp. RCC307]
 gi|147850965|emb|CAK28459.1| Exodeoxyribonuclease V beta chain [Synechococcus sp. RCC307]
          Length = 1189

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 130/1032 (12%), Positives = 286/1032 (27%), Gaps = 174/1032 (16%)

Query: 11   ESYELIYKDLWPLPYFQVSDI---NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            E +E +           +  +       S +      T L +   L   ++ +   + + 
Sbjct: 226  ERFERLLASDGISTGEAMQQLCKGTGNKSPAGALLGKTKLAQLPDLIAIARDRNDIKTYR 285

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             L   F T +         Q  +       E+L      F  I              A  
Sbjct: 286  KLVQAFSTSQLKRVLADPDQAPSSGLHRAAEQL-----CFEPIEQLLTDLVHALRQGAWQ 340

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                       + K++   + F DL+   +       V A ++    Q+++  LIDE QD
Sbjct: 341  R---------RQLKQE---MSFGDLLERVDPARLSPPVLAGLKQWRQQQLSCCLIDEFQD 388

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T  IQW +  +L +              L  +GD KQ+IY F G + +           R
Sbjct: 389  TDPIQWRLFAALFD----------GEAPLTLIGDPKQAIYRFRGGDIRTY---------R 429

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            +  +  +     L  + RS   +L+V++++F+      G     + TI +R  +  +  +
Sbjct: 430  SAVSTPERQRFSLDTNRRSDPALLSVLNRLFA------GEGSFGSPTIDYRMVQAPEHAS 483

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                             +          L        L +R+   +   + +      G 
Sbjct: 484  PSRLRCADGSPAPPVRMRWLGEADGGKPLKLGELRDSLPQRVCDDLQRTLSSGMELQQGD 543

Query: 368  -KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R +   D+ VLV + ++        +       I         L        L     
Sbjct: 544  GWRALHPGDLAVLVGRNREA----VALQRELQRRGIPARIGRGGDLWQSPEAASLSLWLE 599

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                Q D  +   +  S +  F   ++                    +    S +   ++
Sbjct: 600  SSERQGDRRAAAALALSSVGGFLAAEL--------------------SGWSPSDWGAWLQ 639

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLRNEQN 542
             + +         P     ++  A  G  +   +   E        + E L      +  
Sbjct: 640  QLEQARQRYALVGPLAALEVVQAAGPGLPRLRGQANGEQRLSDRRQMAELLQQ--SWQDQ 697

Query: 543  SYSSLQELISELEQYP------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               S   L+  L +           ++   A+ + V + T+H++KGLE P+V+       
Sbjct: 698  GRPSAARLLHWLNEQQLFGGEGEDAQQRIVASESMVTLTTLHSSKGLEFPLVWCPTLWEV 757

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                                   +     +S ++  ++ +   +    +E  RL YV +T
Sbjct: 758  DGGVDAEAPFRAWDPS---QQRRVLELSRRSGSSPRAERLMEARLEGWQERLRLGYVALT 814

Query: 657  RASDQL----------------IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            RA  QL                 +        E +   +   D +  +    + ++    
Sbjct: 815  RAKHQLCLDWGRIKDSGASLPAWLLHPELRQQEAEQPWQAIADHISRASDLRQALQHRCD 874

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
               I+ ++        + P             +   +              ++   L+PS
Sbjct: 875  ELGIHLEDLNPEAPPAYRPAANTQPLAAAAAMIPPRRPFSSWGRWSYSRLHDQSQTLSPS 934

Query: 761  TIDTKGKTNLESLLSD-------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
              + +G         +                 + G ++H +L+ +    +         
Sbjct: 935  AREEEGFDPDRESSPEDPGGAEDPCWRELPGGASFGTLVHAILEQLDFEADLSSPEVRQL 994

Query: 808  YCTKNAK-LWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEVSVSGKIN-- 856
               + A+     +   +LL +I  LL+ P         +    S D+  E+     ++  
Sbjct: 995  VRDEVARSGLDPQLSNSLLGAIEVLLQRPLGGPLGDCQLNQIASGDTLRELPFDIPLSGF 1054

Query: 857  ------------------------------------CPKKDIIISGRIDQISISQQN--- 877
                                                       ++G ID I         
Sbjct: 1055 SASPSSDVLGEALEQLAAHHDPVVQSYARERLQQRQAQLSSGFLNGVIDLIIRRPSRDGT 1114

Query: 878  --IFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNK-------SLVCLLIYV 927
                + ++KT+    P         +  Q  +Y + ++     +        +  ++++ 
Sbjct: 1115 QHWVVLDWKTNRLVRPINDLMAAKDYWLQAQLYRQAVQRWLHWRLGEETPVRIDAVMLFT 1174

Query: 928  SEPKVFIIPQNK 939
               +   +    
Sbjct: 1175 RSGEGAWLLDET 1186


>gi|251772975|gb|EES53533.1| UvrD/REP helicase [Leptospirillum ferrodiazotrophum]
          Length = 1166

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 131/999 (13%), Positives = 266/999 (26%), Gaps = 163/999 (16%)

Query: 1    LKNRFGLSLNESYE--------LIYKDLWPLPYFQVSDINKYVSLSMETG--NPTILKKA 50
            L++  G+   E+                  L   +          S + G       KK 
Sbjct: 192  LRDNPGIPPPEAPRQAFLTARHRWISAAGTLGEGEAERWLNSFPGSGKNGRVLADDRKKR 251

Query: 51   QTLQQASQTQC-----IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105
            +T+                 FS L    +    T                L+E L+ ++ 
Sbjct: 252  ETMAARIVELGTPHPLPPAGFSSLDDELVEFLKTSSPGAAQPSALAALAGLREYLESART 311

Query: 106  EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                +R+RF      + +  +L           + ++   V  F+D+I      L     
Sbjct: 312  LSSSLRERFRREVHREFSSVAL-----------KKREHQGVETFDDMIGRVVAGLMGPR- 359

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +   + +      +DE QDT   Q+ +   + E             +L  VGD KQS
Sbjct: 360  GEELARLLRKRFPVAFVDEFQDTDYAQFAIFGRIYELVS---KDSDGETSLVLVGDPKQS 416

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F GA+    +  +    K+         +  L +++RS A  +  V+ +FS   +  
Sbjct: 417  IYRFRGADLDAYVEAREAVLKKDAEG-----LCSLGVNYRSDALHVEAVNTLFSRHPDPF 471

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             +S +          + G  G +           ++ +          D   +  S    
Sbjct: 472  -ISGERIVYHPVTPKKTGPSGFLD---------PAESDEGLPPVLFAIDPEGEAFSNKDF 521

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
                A  I  ++    +      + ++  DI +LVR      ++      L     I  V
Sbjct: 522  VDWAAREILRLLSGPALREG---KPLRPDDICLLVRTNSHATMMLEALESL----GIPAV 574

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                  +       DL  L   +    D      +L SPLF     ++  +     +   
Sbjct: 575  SYAGGNVLRGEMAFDLEMLLLALKDPGDRRQMRLVLSSPLFEVPARELLSM----EDDPE 630

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++           + +   +  +  L  +                + GR++         
Sbjct: 631  LWNARVDPFFRTAADWFR-LGAMGALRRLCLETRVFSRILGGGAGRSGRRRLTD------ 683

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQ-------YPPTIKRAHSANHNEVRIMTVH 578
               L   +      +++  +    +   LE                       VRI+T+H
Sbjct: 684  ---LLHLIEIVESLDRDRPTLALLVDRYLEARRESEKKGDDATAPRLDTLDGRVRILTIH 740

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             AKGLE P+V L    S        ++         +    +                  
Sbjct: 741  RAKGLEFPLVILPLGLSGGDLSPAEEEEGEGEGEESETPEEMM----------------- 783

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----- 693
                      RLLYV +TRA  + ++       ++    +             +      
Sbjct: 784  ----------RLLYVALTRAVHRTVVMLPCRYVSQSSLARLLSGGSSSGGKRGEAVSFFR 833

Query: 694  ---RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                    +      +      +     PE+ P               +  + FS +   
Sbjct: 834  KEIARLVAEYPALFGEALPPDRQREGLSPESLPALLPPRRLPRPLPAPLRVESFSSLARG 893

Query: 751  INEPYILNPSTIDTKGKTN--LESLLSDNQTFNRGLIIHKLLQVI--------FTLPEHK 800
              E   L    +           +   +      G + H+  +++           P  +
Sbjct: 894  GREGRTLFSPALRGDDDLPWERPAGDPEPGGPLFGTVFHRTFEILLSSAPPGEARDPFRE 953

Query: 801  RKNFITSYCTKNAKLWP---AKEYKNLLLSITRLLEN--------PMMTTAMSCDSYSEV 849
                +     +++           + L     R L          P    A +  +    
Sbjct: 954  LPEALDRAMAESSSDLGGQAEAFREALFPLCARTLSAGLFPDPAVPGGWFAFARIASLPR 1013

Query: 850  SVSGKINCPKKDI-----------------------IISGRIDQISISQQNIFIFEYKTH 886
            SV  +   P   +                       +I G +D +    +  ++ +YKT+
Sbjct: 1014 SVEREFLLPAGGLSERDLRPYLFPEGAPLSFDPVRGMIRGFVDLLFRQGEKTYLLDYKTN 1073

Query: 887  HHVPQEIEH-----------IPYTHIAQLSIYEKILKDS 914
                +                 + +  Q  +Y   L   
Sbjct: 1074 RLPGESEAAAYGPEGLSRAMAQHRYDFQGLLYSLALHRL 1112


>gi|148270656|ref|YP_001245116.1| UvrD/REP helicase [Thermotoga petrophila RKU-1]
 gi|170289362|ref|YP_001739600.1| UvrD/REP helicase [Thermotoga sp. RQ2]
 gi|281412966|ref|YP_003347045.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10]
 gi|147736200|gb|ABQ47540.1| UvrD/REP helicase [Thermotoga petrophila RKU-1]
 gi|170176865|gb|ACB09917.1| UvrD/REP helicase [Thermotoga sp. RQ2]
 gi|281374069|gb|ADA67631.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10]
          Length = 648

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 105/623 (16%), Positives = 208/623 (33%), Gaps = 134/623 (21%)

Query: 57  SQTQCIEERFSLLSSFFLTQK-FTPQKNIITQEINKKSPDL-KEKLKKSQDEFIKIRDRF 114
              +  E       S +L +K    +KN     +        K  LK  ++  +    +F
Sbjct: 122 LDREDAESLMRHARSKYLERKSKEERKNFPQPSVLMAIYSYMKNTLKSLRESIVVKNPKF 181

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                             +   YE+ K+   V+D+EDL+     LL++      IR +  
Sbjct: 182 L---------DLKEEISEIFDLYEQEKRSQNVVDYEDLLFYAYRLLEEN---KEIRDREA 229

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           +    +L+DE QDT+ +Q+ ++  L+          S    + AVGD+ QSIYSF GA  
Sbjct: 230 ERFLWVLVDEFQDTNYVQYRIVEHLS----------SKHGNVLAVGDDAQSIYSFRGARY 279

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + V    +              I ++  ++RST  I+  ++           +    +  
Sbjct: 280 ENVEDFIK---------VSGTKIFKIQTNYRSTESIVKFINA----------MLPKKSVP 320

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              +  +   +  V +                           +       AR ++  I 
Sbjct: 321 KELKPVKKDGMKPVVV---------------------------KTWDRYEEARFVSQRIL 353

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +I              + ++I VL R    +       +      +I          T+
Sbjct: 354 ELIEEG----------FKPEEIAVLYRSHSHS----LELQMELVRSRIDFRVLSGPRFTE 399

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC--TQRHETETVYEYIQK 472
              +KD+++  R + +  D  +++   K   +   +    KI      +  E +  + + 
Sbjct: 400 SAHVKDVLSFLRIVQNPRDKSAWLRTAK-LFYGIGDRTASKIADLASAYVEEGLDPFQEL 458

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--EVIDVLD 530
                  ++   I  + ++  +    SP +    +L      +   +R+ +  E    L+
Sbjct: 459 KKVSFSGEYSRFIDILDQIRKL---DSPGEMIERVLS-SFYSEYLEARYPDFREREMDLE 514

Query: 531 EFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
             +    R      +SL+  +++L       I+R  S    +V + TVH AKGLE  VVF
Sbjct: 515 RLVEIASRY-----TSLESFLTDLAVTENVEIEREISQKEGKVTLTTVHQAKGLEWRVVF 569

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           ++      F +                                      + +   +E  R
Sbjct: 570 VISVNPGDFPN-----------------------------------YFAISEGNLDEEER 594

Query: 650 LLYVGMTRASDQLIICKHSNTSN 672
           + YV +TRA +QL I      ++
Sbjct: 595 IFYVAITRAKEQLYISYQVTGTS 617


>gi|321310796|ref|YP_004193125.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802640|emb|CBY93286.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
          Length = 639

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 97/594 (16%), Positives = 194/594 (32%), Gaps = 120/594 (20%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAHYE 138
            +K+I ++ I  ++      + K ++ + +  +R      F             +   YE
Sbjct: 119 KEKSIDSEGITPRTMANIVSILKHRNPYEQPLERNEVALHFSRKYELSFEDLADVYNAYE 178

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           +  ++  VLD++DL I  N+LL   +     R   +Q    ILIDE QDT+ IQ+E+++ 
Sbjct: 179 KNLREINVLDYDDLEILANNLLNIEEA----RKYWNQYFKAILIDEFQDTNDIQFEIVKK 234

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           +  +           + LF VGD  QSIY F GA+           +           ++
Sbjct: 235 ILGE----------HQNLFCVGDPDQSIYGFRGAKAGICREFLDTFE--------DTQLV 276

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           +L  ++RST +IL V + + +                             +L + + + +
Sbjct: 277 KLEENYRSTQNILNVSNVLINKNSG-------------------------ELSKVLFTSN 311

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
           +         + + +D +            +   +  +I  +             +D  +
Sbjct: 312 EEGSKVVYREFINEWDEVN----------YVLDEVQYLIKRE---------GASLRDFAI 352

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R            +  K +Y I     +         I+ + A    + + +   +  
Sbjct: 353 LYRNNFLAVPFEMKIKEKKWEYSI----TNSVEFYSREEIRAVAAYLHLVFNDDATDALY 408

Query: 439 CMLKSPLFNFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            +   P     E  +    T +        E     +   +      + F+ +   I EL
Sbjct: 409 KIRALPPKGIGEVAVRTFETFKAASSYTVLEALFNIDECPELTTRAKTAFKELGVLIGEL 468

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                    +D    I+     ++  + +     I+ + +F         +  +   E++
Sbjct: 469 RSKK-DLGIYDLIMFIIDKSGYKKYLMEKKELGRIENIIKFAEILK---SDKGADNWEVV 524

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            E+      +        + + + TVH  KGLE   VF+V   S VF             
Sbjct: 525 KEIPLKTKDVVPKTD---DYILLSTVHQVKGLEFKYVFVVKMVSDVFPS----------- 570

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                    + +  + + E  RL YV  TRA  +L I 
Sbjct: 571 ------------------------YRSITAADKSEERRLAYVAFTRAKKRLYIT 600


>gi|298372545|ref|ZP_06982535.1| helicase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275449|gb|EFI17000.1| helicase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 1036

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 119/912 (13%), Positives = 291/912 (31%), Gaps = 134/912 (14%)

Query: 34   YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKS 93
              + + +T      K A         + + +      S  L  K  P++N +   + +  
Sbjct: 247  AETFNRKTVFNHFKKFADKDFDFEAGKMVLDALEDYGS--LVTKSNPERNTLLPVMERVF 304

Query: 94   PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
              L ++ ++ ++ ++    R+   K+    + +L L  Y++   +   ++N       ++
Sbjct: 305  HPLLKETEEFRERYMA---RYLAAKLCLKNIFNLGLLSYISKEIDRQSRENNRF----ML 357

Query: 154  INTNDLLK----KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
             +T  +L          +++  KI  ++ +++IDE QDTS +QW+  ++L  D       
Sbjct: 358  KDTAMVLNAMINPEHDFSFVYEKIGADVRNVMIDEFQDTSWLQWQNFKALLADIMA---- 413

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
              S R    VGD KQSIY +   + + +   +   +              L  ++RS  +
Sbjct: 414  --SGRFSLLVGDVKQSIYRWRNGDWRILNNIEDEIRH--------AETRVLDTNWRSARN 463

Query: 270  ILTVVDKVFSI-PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            I+   + VF    +        +  ++ +               +  +   +        
Sbjct: 464  IVEFNNDVFGKMAQMLPEKFRSTYGSLPYNPFEKAYGDV-----RQKASKTADEGFVSIG 518

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                 D                     +           ++   A+ I VL R  K+   
Sbjct: 519  IYDRDDE-------------------ALDMLGKTLDTLARKGYPAEKICVLCRTNKEVRQ 559

Query: 389  ITFLTR--FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            +         ++D   +VV ++ F+L+   A++ ++A+ + I + +D ++   +      
Sbjct: 560  VADFLAKSEPEDDAYKNVVSDEAFLLSSSPAVQLIVAVMQVIDNPQDKVAAYEV------ 613

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             F    +           + Y                    +  L   A           
Sbjct: 614  GFIGKTLGLPSVDWRAELSDYG-------------------LKSLYETAMTIISLSGIHR 654

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
            I G                   L  F+++ +  +Q++ + + + +        + K   S
Sbjct: 655  IEGQAGY---------------LYAFMDYLMSYQQDNSADISDFVRYWN-DELSRKTVGS 698

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQV-FSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            ++   +R+MT+H +KGLE   V +      +  ++              D  +       
Sbjct: 699  SSIKGIRVMTIHKSKGLEFDTVIIPFLEEDMHRTNTSSIVWCGAKDKPFDLPVFPIEYDK 758

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            +   ++  D           +   + YV  TRA + L I     +   KK          
Sbjct: 759  RMERSVFRDDFIDETIMLLMDSLNVFYVACTRAVNNLFIFAKRASVETKKIRIEQLLQEA 818

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                 +      +   N+      +  +    +  +  +     I+    ++ +  +  S
Sbjct: 819  VALDDDTFASGNLSDYNASAGSSSVPDDNPFKNLYSETVRAGFDIQNGTLDKTLFIQSNS 878

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
              +  + +    +P  ++                   G I+H +   I         + +
Sbjct: 879  SREFILGQDGETSPFVLE-------------------GNIMHSIFSAID--TADDVDSAV 917

Query: 806  TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSGKINCPKKDII 863
             +       +    + +  + +++  + NP++    S    + +E ++   I+    +  
Sbjct: 918  RNLV--YKGIITDSDSRYYVSAVSEAIANPLVAEWYSGQYKTLNEQTI---ISKTADNRP 972

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
             + R D++ I  +   + +YK               H  Q+  Y  +L+      S+   
Sbjct: 973  TASRPDRVMIDGRRAIVVDYKFGQP--------QAAHRRQIVHYMSLLEKM--GYSVEGY 1022

Query: 924  LIYVSEPKVFII 935
            L YV    +  +
Sbjct: 1023 LWYVKANNIERV 1034


>gi|224457595|ref|ZP_03666068.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254875288|ref|ZP_05247998.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254841287|gb|EET19723.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 1168

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 119/767 (15%), Positives = 236/767 (30%), Gaps = 88/767 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++RD     K  ++          +   + +AK++  VLDF+DLI      +KK    
Sbjct: 223 IKELRDLQQEIKQAQAAQFIRKACLQIRQDFAKAKEQKGVLDFDDLITKLCQSVKKSPE- 281

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT-------------------------- 200
             +   + ++    LIDE QDT   Q+E++ ++                           
Sbjct: 282 --LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSSHSHEGRNLLTNGLNLKDTR 339

Query: 201 -EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             ++    + + S   L  +GD KQ+IY F G +    L+ K    +         +   
Sbjct: 340 LREYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEE--------NQWS 391

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           +  ++RST +++   +++F   +          T I         V      ++     D
Sbjct: 392 MDTNWRSTGEMIKAYNRLFYKQDYQPEEEGQIGTNIFSDGIGYQLVKASPDADKKTKDFD 451

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
               P    +    +   +    + L+      I+ ++ T  +            DI +L
Sbjct: 452 DNFKPINYFYYEVAEDDNKSDIDTNLSLWTVNEITRLLNTQKVAE---------NDIAIL 502

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           V   K   +I    +        SV  + R  +      K+++AL   I   E+      
Sbjct: 503 VENGKQAKIIQQALQAKNLS---SVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKR 559

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            L + L          I        + ++   + A                L        
Sbjct: 560 ALSTSL--LGGRADKFISYIDENDVSAWDDEIEKA--------------KSLRQQWHKYG 603

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYP 558
              F   I+     ++          I  L E +       ++S   ++    +L     
Sbjct: 604 FMTFIMQIIHENFTQRADSKERIITNILHLAELIKVAENKYKHSNQLIKWYRHQLNNTAT 663

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              +    ++ N ++I+T+H +KGLE  VVF+                      +    +
Sbjct: 664 SEGELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDGDLKQTV 723

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                           + +   K   EE  RL YV +TRA  +  I      ++EK    
Sbjct: 724 YKIGKD--------DSVKQQADKEVIEELMRLFYVAVTRAEHRCYIGVAKYNNSEKSPLA 775

Query: 679 RT-----WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           R        D +              L  +I      + +  +   +N+  +  +     
Sbjct: 776 RFLGYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDTLKANYIS 835

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------KTNLESLLSDNQTFNRGLII 786
             E    + L     +            ID             L    + ++  + G I+
Sbjct: 836 KLENDSWEMLSFSKISKSKVQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNIL 895

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           H +L+      +    N +     +  K+  A+++ NL L +   LE
Sbjct: 896 HNVLEHTDFSLDEIDGNLLQEQMDRY-KVVAAEDFDNLKLWLEECLE 941



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899
            +      E      ++  K   ++ G ID I   +   ++ +YK+++      ++     
Sbjct: 1032 LRDTRLREYGNLTNVSNQKIFGMLHGFIDLIFEYEGKFYVADYKSNYLGDTLEDYNQQAM 1091

Query: 900  --------HIAQLSIYEKIL 911
                    +  Q  IY   L
Sbjct: 1092 QEKNQSSFYDLQYLIYSVAL 1111


>gi|153004883|ref|YP_001379208.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
 gi|152028456|gb|ABS26224.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5]
          Length = 745

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 96/660 (14%), Positives = 187/660 (28%), Gaps = 121/660 (18%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                      +        +   Y E K +   +DF+DL++N   LL +R+    +R  
Sbjct: 185 ADVLADRRPQFVPLTDDVLRVARRYAERKHELNAMDFDDLLLNWKILLAEREA---VRRA 241

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +     H+L+DE QDT+ +Q +V+  +  +           R L  VGD+ QSIY+F GA
Sbjct: 242 VAGRYRHVLVDEYQDTNRLQGDVVDLVAGE----------HRNLCVVGDDAQSIYAFRGA 291

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +L  ++                +L +++RST  IL + +   +           S 
Sbjct: 292 HFANILEFEKRYP--------DARRYDLTVNYRSTPQILGLANASIAANVRQFEKELTSV 343

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                  +                                   +         A  +A  
Sbjct: 344 RPDGTLPA-----------------------------------VVPCREVQQQAAFVAQR 368

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +  +              I   +I VL R            +F      I  V       
Sbjct: 369 VLELRDEG----------IPLPEIAVLYRAHHHA----MEIQFELARRGIPFVVRSGVRF 414

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLK-SPLFN-FSEDDIFKICTQRHETET----- 465
            +   +KD++A  RF+ +  D+L+    LK +P     + + ++     R +        
Sbjct: 415 FEAAHVKDVLAHLRFVRNPGDELALKRCLKITPGVGTATAEGVWNAFLARRQRGAGTVDE 474

Query: 466 --VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--F 521
               +        G + ++ + + +  L        P +    ++          +    
Sbjct: 475 LLAPDVASHVPPKGRAGYRKLAELLRALSRKPTAELPGEAIEKVIEG-GYEDYLRAEFLN 533

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            +  ++ L +   +    E     +    IS L +              ++ + +VH AK
Sbjct: 534 ADSRVEDLRQLAEYARGYEDTE--TFLAEISLLTELTAETVSEGGDPDEKMVLSSVHQAK 591

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VF+V      F                                          +
Sbjct: 592 GLEWRAVFVVWLSDGRFPS----------------------------------AQALKDR 617

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +EE  RL YV  TRA D+L +      +   +                     ++   
Sbjct: 618 DGEEEERRLFYVACTRAKDELYLTYPILAAPRDRER---VVMKASRFVEELPGEPELFER 674

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
             +++    A         +  L   +                  +     +   L P+ 
Sbjct: 675 WQLDEPGAAAPALGAAPAPSGQLPPRDARVVPALFGAPTPGERPRLGAPGIDARELPPAN 734


>gi|323946506|gb|EGB42531.1| exodeoxyribonuclease V [Escherichia coli H120]
          Length = 925

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 102/637 (16%), Positives = 212/637 (33%), Gaps = 69/637 (10%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           +    +  D+     +    L        +       K++   L F+D++   +  L+  
Sbjct: 309 RHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR-S 367

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 368 ESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIW--------HHQPETALLLIGDPK 419

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS  ++
Sbjct: 420 QAIYAFRGADIFTYMKARSEVHAHYT----------LDTNWRSAPGMVNSVNKLFSQTDD 469

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
           A    E     ++                 +      +  P  + W    +S       S
Sbjct: 470 AFMFREIPFIPVKSAGKNQA----------LRFVFKGEMQPAMKMWLMEGESCGVGDYQS 519

Query: 344 ILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            +A+  A  I + +         + +    R ++A DI VLVR R++   +      L+ 
Sbjct: 520 TMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEI 579

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
               SV  ++R  + + L  ++++ L + +++ E + +    L + +   +  DI  +  
Sbjct: 580 P---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNN 636

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                    E+           ++ + +    +  +    S  +    +L    G ++  
Sbjct: 637 D--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLT 688

Query: 519 SRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                     + E L      L +E      L + I E +    + +    ++ + V+I+
Sbjct: 689 DIL------HISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIV 742

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE P+V+L    +     +                      ++    N   + 
Sbjct: 743 TIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR-------------HSFEAVLDLNAAPES 789

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
           +   +     E  RLLYV +TR+     L +        +KK +       +       E
Sbjct: 790 VDLAEVERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGE 849

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
                 L   I         W T    +    +    
Sbjct: 850 PQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDA 886


>gi|19703859|ref|NP_603421.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714017|gb|AAL94720.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 919

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 136/876 (15%), Positives = 274/876 (31%), Gaps = 174/876 (19%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            +++   + +     +  ++T   +   K     YE+   +N ++DF  L +   ++L  
Sbjct: 160 LRNKINDLNENAIDIESIQTTDIYINFIKAAYKLYEKQLFENNIVDFSYLQVEFLNMLLN 219

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               A    KI+   ++I++DE QD++ IQ +++  ++++           + +  VGDE
Sbjct: 220 N---ADFLEKINNNFDYIMVDEYQDSNKIQEKILLFISKN----------KKNICVVGDE 266

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA  + +L   +           +   I L  ++RS  DI+      F+   
Sbjct: 267 DQSIYRFRGASAENILNFSKHFNND------ECKCIVLEENYRSVNDIVE-----FNNNW 315

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                   +       S R+  +    ++    +  D                       
Sbjct: 316 INAINWYGNRFEKNIVSMRLDNILNKSVFHISGTTSDENI-------------------- 355

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
               R     I  +  ++ I             I VL            L   LK +  I
Sbjct: 356 ----RNTVTFIKKLKQSNKIT--------NYNQIAVLF-SHFKDRSAKKLEDALKKE-NI 401

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            V      +  +   +K        IL+          L   L      D+ ++  ++  
Sbjct: 402 EVYSPRTKVFFEMYEVKLTFG---VILACFKKYFPEETLNIYL--LECLDLARLEIRKDN 456

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
               +              +  I+ I E      F S ++ F  +L     +        
Sbjct: 457 EFLAW-------------IKEKIENISEY----SFYSLNEIFYELLSFSYYKNVLKEESP 499

Query: 523 NEVIDV-----LDEFLNFTLRNEQNSYSSLQE--------LISELE----QYPPTIKRAH 565
            E         L +      +   +   S+++            LE         I    
Sbjct: 500 IEARANHNLTILSKIFKNFQKYVHSKKISIEDDFSIIKYFFTKYLEILKQSRVDEIFSEE 559

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              ++ +  +T+H +KGLE PVV +    S+      + +   +  L +           
Sbjct: 560 DYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNVSGDLSRQTSIDRLINSN--------- 610

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                               ++ R  YV  +RA + L++  +         N ++++  V
Sbjct: 611 ---------SKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEK---GLSENFKSFFYSV 658

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                    + +I L     KDE     ++T                      I    + 
Sbjct: 659 RGVNSLQFDINQINLDEVSKKDERRILSYTT---------------------DIALYRYC 697

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
           P+K  +      +                 D + FN G+I HK ++ I      K++ F 
Sbjct: 698 PMKYFLVREKEYS---------------TFDKKVFNLGIITHKAIEHINKSFLQKQEIFS 742

Query: 806 TSYCTKNAKLWP-------AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
            +Y     K              + ++  + + +++             E S   +    
Sbjct: 743 DNYIENIVKNIYKFQNIDLDNNVERIINIVKKYIKDE--KDNFKYIKKVEAS---EFRVE 797

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
             + I+ G+ID I   +  I I ++KT  +           +  QLS+Y+ +L+  Y +K
Sbjct: 798 D-NYILYGQIDLILEDENEIKIIDFKTGKY---NEFEFSSNYRQQLSLYKLLLQKKY-DK 852

Query: 919 SLVCLLIYVSE---PKVFIIPQNKLNKAFAEISTKI 951
            +   L Y+ E    K  +I    L +    I+  +
Sbjct: 853 EIKTYLYYLEEDEPKKEILIDDEDLKEDLENINKTV 888


>gi|190346242|gb|EDK38280.2| hypothetical protein PGUG_02378 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 830

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 95/654 (14%), Positives = 185/654 (28%), Gaps = 141/654 (21%)

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               ++   LL          PQ+N   ++  K+       LK                 
Sbjct: 118 IADEKDSIHLLEECLEKIGKNPQQNDDEKQDTKRYRAKISSLKS-----------RAITP 166

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           +      S      L   Y+E+     +LDF+D ++  ++LL +  V  ++         
Sbjct: 167 IVFKKSHSDEYLSSLYETYQESLTAAKLLDFDDCLVRCHELLLQYPVLNFV--------K 218

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +L+DE QDT+ IQ   ++ + E      +  +    +  VGD  QSIY F  A+     
Sbjct: 219 SVLVDEFQDTNEIQ---LQLMYEFAKGHPSDQNLQNNVLIVGDPDQSIYGFRDAQVGNFK 275

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
           +     + +    G   + I L  ++RSTA IL   + +    ++    +  S     ++
Sbjct: 276 KMVTFYENK----GLSCTTILLEENYRSTAGILDFSESIMRQQKSRTIKNLRSQKNATYK 331

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                  G+                                       R I Y I  ++ 
Sbjct: 332 PVIASLKGS-----------------------------------EQEGRWIVYQIETLLS 356

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                     + ++ +DI +L R    T  +            I  +        D   +
Sbjct: 357 -------LPGQPLRHEDIAILFRAAYQTRAVEQEL----TRRGIPYLMLRGKAFWDRKEV 405

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSED-------DIFKICTQRHETETVYEYIQ 471
              M   R + ++ D L+ V  L  P     E        ++       H+T   +    
Sbjct: 406 VVFMDYLRVVSNESDRLALVRTLNYPKRGIGEKAMKLIENELQNSANSVHQTLVAFCKSG 465

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----- 526
           + ++         +  I            ++        ++   + +   G +       
Sbjct: 466 QLSSKTKEGLSAYLGLIERCRE---HLDHYEMTHDKSLLERLSSELLRDSGLQTEFEDDS 522

Query: 527 ---DVLDEFLNFTLRNE------------------QNSYSSLQELISELEQYPPTIKRAH 565
                + E     L  E                   + ++ +Q+ +  +  Y        
Sbjct: 523 NKMLNITEVQRQLLDFEPQDEQIELFVGGSENDQADDPFNHIQKFVQAIGLYESEESAQS 582

Query: 566 SANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                + + + T+H +KGLE   VF+      V                           
Sbjct: 583 KEKSTSRITLSTIHGSKGLEWHTVFVPGLSEGVLPAGF---------------------- 620

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                      I    + + +E  R  YV  TRA   L I  +     +     
Sbjct: 621 ----------AIADNSEQSADEERRCFYVATTRAKTLLYISSYIEEEGKWGRKP 664


>gi|86158232|ref|YP_465017.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774743|gb|ABC81580.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 725

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/642 (16%), Positives = 191/642 (29%), Gaps = 119/642 (18%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                      +A       +   Y E K     +DF+DL++N   LL +R+    +R  
Sbjct: 172 ADVLADRRPQFVALTDDVLRVARRYAERKHALNAMDFDDLLLNWKILLAEREH---VRRA 228

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +     H+L+DE QDT+ +Q +V+  +  +           R L  VGD+ QSIYSF GA
Sbjct: 229 LAGRYRHVLVDEYQDTNRLQGDVVDLIAAE----------HRNLCVVGDDAQSIYSFRGA 278

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +L  ++                +L +++RST  IL++ +   +             
Sbjct: 279 HFANILEFEKRYP--------DARRFDLTVNYRSTPQILSLANASIAANVRQFEK----- 325

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           +L             P ++                  A  +A  
Sbjct: 326 ----------------ELSSVRRDGTLPAVVPCRDV--------------QQQAAFVAQR 355

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +  +              I   +I VL R    +       +F      I  V       
Sbjct: 356 VLELRDEG----------IPLPEIAVLYRAHHHS----MEIQFELARRGIPFVVRSGVRF 401

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDD----IFKICTQRHETETVY 467
            +   +KD++A  RF  +  D+L+    LK +P    +  D     F +   R       
Sbjct: 402 FEAAHVKDVLAHLRFARNPGDELALKRCLKITPGVGTATADAVWSAFSLRRSRGRGAVDE 461

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISR--F 521
                 A+   +K +     + +L+           P +    +L      +   +    
Sbjct: 462 LLAPDVASHVPAKGRAGYTRLAQLLRALSRPPTSDLPGEAIEKVLDG-GYEEYLRAEFLN 520

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            ++ ++ + +   +    E          I+ L +              ++ + +VH AK
Sbjct: 521 ADQRVEDVQQLAQYARGYEDTEA--FLSEIALLTEISAETVSEGGEPDEKMILSSVHQAK 578

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VF+V      F                                           
Sbjct: 579 GLEWRAVFVVWLADGRFPS----------------------------------AQALKDT 604

Query: 642 STQEEYNRLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
             +EE  RL YV  TRA D+L +         +++         + +     E  ++ +L
Sbjct: 605 DGEEEERRLFYVASTRAKDELYLTYPVVAAPRDRERVVMKASRFLEELPAEPELFERWQL 664

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            +        A   +T  P   P        +    +     
Sbjct: 665 DDPGLPAALGAAPPATGLPPRDPSVVPALFGEPSPRRGPVPA 706


>gi|325830815|ref|ZP_08164199.1| UvrD/REP helicase [Eggerthella sp. HGA1]
 gi|325487222|gb|EGC89665.1| UvrD/REP helicase [Eggerthella sp. HGA1]
          Length = 1231

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 139/952 (14%), Positives = 266/952 (27%), Gaps = 179/952 (18%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            D+K ++K  Q    ++                + LA+ + A +E AK+  C LD +DL++
Sbjct: 275  DVKAEVKAYQAVHARVAQNVALALAHPLASELMALAREVTARFEGAKRAACKLDNDDLLV 334

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
             T D  ++      I  + ++    +++DE QDTS +Q ++I  L               
Sbjct: 335  RTLDAFER---CPDIAARYERRFKLVMVDEFQDTSQLQIDMIARLAGPRCAH-------- 383

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             L  VGD +QSIY F GA+       K+  +            +EL  +FRS  D+L+ V
Sbjct: 384  -LCTVGDAQQSIYRFRGADVNVYEAHKKAMRAD----EVGALYVELTKNFRSHGDVLSFV 438

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            D+VF                 +  S   G    + L   V                    
Sbjct: 439  DRVFEQSTVFGEAFMSLEPNEQRPSCYRGSAPRIDLVLSVQPAGRGTG------------ 486

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
             +    +    A  IA   + +                  D++VL+ K     +     R
Sbjct: 487  -VRTADAKRAGAEAIARRFAALREDGHA----------PGDMVVLLGKMSRAGMYAEALR 535

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                      V     +      ++ +      + +  +  +   +L S +   S DD+ 
Sbjct: 536  AE----GFECVVTGGSLFASAPEVRVVARFVEALANPANTAALFEVLTSDMMRLSADDLL 591

Query: 455  KI---------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
             +         C +R + +  +  +   A+    +  H ++        ++         
Sbjct: 592  VLTTEEDPETGCVRRRDLDRGFARLASRADGLPPRLAHAVRLFERARDESRTRPVATVVR 651

Query: 506  LILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              +       +       G      + + +    R E   +  L      L        +
Sbjct: 652  DAVVRSGWMARLEEEGAAGTARAANVLKAVRLVDRLETERHLGLASTARALADELAVGLK 711

Query: 564  AHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGS----------------------- 595
                    A  + V+IMT+H +KGLE PVV L D                          
Sbjct: 712  EAPGALSGAGGDVVKIMTIHASKGLEFPVVALADFADARAGSGKLLVETCGAIARASLAP 771

Query: 596  ----QVFSHKHIKKMHIMPSLNDDPGIPIWIPQ---------------SKSRNNIVSDLI 636
                + F     +         +D    +   +               S ++    + L 
Sbjct: 772  AASLEAFPQLAKRSGAAAAGDGEDDADLLAARRLVEGEDGPACALGASSCTQAAYRAQLA 831

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIIC--KHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            +        E  R LYVG+TRAS+ L++     + ++ +  +      D+      + + 
Sbjct: 832  RRAADEELAEARRKLYVGLTRASEALVVAMDAKAPSAGKPPAYAPLVDDIRSALCGDGDF 891

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE------------------ 736
             + +                    PE    E  E   +                      
Sbjct: 892  PEGVAELPYGGTAPARFERILVQPPEPRVEEGAEPAPEPRLFFVPVVDDASRSTLFAGGL 951

Query: 737  ----------QKIPKKLFSPIKND---INEPYILNPSTIDTKGKTNLES-----LLSDNQ 778
                       ++P    +P + +   +  P       ++   +  L         S + 
Sbjct: 952  ARDGDFPEGVAELPYGGTAPARFERILVQPPEPRAEEGVEPAPEPRLFFVPVVDDASRST 1011

Query: 779  TFNRGLIIHKLL---------------QVIFTLPEHKRKNFI------TSYCTKNAKLWP 817
             F  G                      +      +  +   +       +         P
Sbjct: 1012 LFAGGSARDDAFSYSSIAPNPVPAPAGEGAPFAADADKATDLGSAFHRAAQLAVETGRVP 1071

Query: 818  AKEYKNLLLSITRL-------LENPMMTTAMSCDSYSE------VSVSGKINCPKKDIII 864
                  +L     L       L +       S  +Y+E               P  D  +
Sbjct: 1072 DAARLGVLSEAYALSTGQRARLADA-CERWFSSATYAETLQWGLRRAEVPFFVPISDAFV 1130

Query: 865  SGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
             G ID +             + +YKT     +  E +   H+ Q   Y   L
Sbjct: 1131 EGEIDLLCTDDAQLAGARALVVDYKTGGSDGEAPEALCSKHLLQAQCYAYAL 1182


>gi|302342252|ref|YP_003806781.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
 gi|301638865|gb|ADK84187.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
          Length = 741

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 113/746 (15%), Positives = 218/746 (29%), Gaps = 127/746 (17%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL-QQASQTQCI 62
             G+   E    +           ++   +        G  T       L ++ +    +
Sbjct: 50  ELGVDPREIL--LLTFTRRAAAEMLARARQLNPACAAVGGGTFHSLCNRLLRRYAARAGL 107

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR--DRFNTYKMF 120
              F+++       +   +  I    +     +   K +         R  +      + 
Sbjct: 108 MPNFTIIDPA--DAEHLVRGCIDELGLKGGKDERFPKPRTVFGLISASRNLELSLAELIQ 165

Query: 121 KSTLASLTLAKYLNA---HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                   ++K +      Y +AK++   +D++DL+     LL+       I+    +  
Sbjct: 166 TREPHLWPISKEIERIALAYAQAKQRQNQVDYDDLLFMAEALLRDNPD---IQDDQRRRW 222

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            H+L+DE QDT+ +Q  ++  +              + L  VGD+ QSIY F GA    +
Sbjct: 223 RHVLVDEYQDTNAVQARLLELICG----------PGQELMVVGDDAQSIYRFRGARIDNI 272

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                             ++++L  ++RST  IL + + +             +      
Sbjct: 273 FEFPERF--------AGAAVVKLERNYRSTQPILDLTNAIIEGAGQRFDKRLFTELLEGP 324

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
           +                                     L +       +R +   I  ++
Sbjct: 325 KP-----------------------------------RLERPRDERGQSRLVRERIQKLL 349

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                         + +DI VL R  +D+  +               V        +   
Sbjct: 350 ADG----------ARPEDIAVLFRAGRDSFDLERELTAEHLA----YVKYGGLKFLEASH 395

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           IKD++A  R I +  D +S+   L   L         +I           ++  +   C 
Sbjct: 396 IKDVLAHLRVIANPLDFVSWQRALM-LLPGVGPTTAQQIVAHLALAAGPADFGPRLRACP 454

Query: 478 ISKFQHVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
             K    ++ + EL+         P D     L   +   +         +  L+E    
Sbjct: 455 QGKRSAPVRQLAELMDELSDPAAPPLDKVEAALEYYEPFCREQYEDYPRRLRDLEELPGL 514

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                     SL+++++EL   PP            + + TVH+AKG+E P VF++    
Sbjct: 515 ARAF-----GSLEDMLAELVLDPPAAHAE-EMGGGRITLSTVHSAKGMEWPHVFVIWATD 568

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                                                            EE  RLLYV  
Sbjct: 569 GRLPSSASLDDPDG----------------------------------LEEERRLLYVAC 594

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA+  L++        E  +      D     F +D     ++ +      E      +
Sbjct: 595 TRAAKGLLLVAPR----ESFNRFDGARDQELSRFLDDLPAAVMESSGGAVFGEAFTRLAA 650

Query: 716 THHPENTPLEREETIKQLMDEQKIPK 741
              P+ TP+ R     + + E   PK
Sbjct: 651 AAAPDETPVARPVAAPRAVKEPAGPK 676


>gi|168186688|ref|ZP_02621323.1| superfamily I DNA helicase [Clostridium botulinum C str. Eklund]
 gi|169295311|gb|EDS77444.1| superfamily I DNA helicase [Clostridium botulinum C str. Eklund]
          Length = 726

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/554 (16%), Positives = 182/554 (32%), Gaps = 111/554 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K KN ++DF+DL +    +  K      +         +IL+DE QD   IQ 
Sbjct: 220 YRTYEDFKFKNNLMDFDDLQLRCKSMFMKN---MKVLNGYKNLFKYILVDEFQDCDGIQI 276

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+++ L           +   ++FAVGDE Q IY F G++P+ ++   +  +        
Sbjct: 277 EILKLL-----------NEGNSIFAVGDEDQCIYGFRGSKPECMVNFDKHFKN------- 318

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + L  ++R    I+ V D +    +        S+                     
Sbjct: 319 -GKKLFLSTNYRCPKSIVKVSDNLIKNNKMRNDKKFKSSKE------------------- 358

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                ++    +    A  IA  I+ ++                
Sbjct: 359 ----------------DMSKINVMNYKNEREQADSIAMNITKLMSIG---------DYNY 393

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQE 432
           +D  +L R   ++  I           KI     D+     +H   KD++A  +  ++  
Sbjct: 394 EDNAILYRTNVESRSIIDSF----IRKKIPFKLLDKEYNFFEHFICKDIIAYLKLSINSS 449

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D  SF+ ++  P    S+ ++ K+       +  ++ ++        + +  I  + + I
Sbjct: 450 DKESFLRIINKPFRYISKVNLGKVRKDN-SGDDCFDALKDNEKIPPFQLKK-IDEVKKDI 507

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV-LDEFLNFTLRNEQNSYSSLQELI 551
                 S       +L                 +D+   E +     +    Y+++   +
Sbjct: 508 QNLNRMSLSGAINSVLHTLDYYDYLKDYSKKFKLDITELEEILEEFISASQDYTTIITFL 567

Query: 552 SELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + + +    IK   ++   + V + T+H  KG+E   VF+++   +   H +        
Sbjct: 568 AHISEVKDEIKNNKNNEEKSGVILSTIHGVKGMEFKNVFIINCNEENIPHINSID----- 622

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                             EE  RL YVG+TR  + L +C  +  
Sbjct: 623 -------------------------------ENLEEERRLFYVGVTRTIENLWVCICNEI 651

Query: 671 SNEKKSNQRTWYDM 684
             + KS  R   + 
Sbjct: 652 RGKNKSASRFIKEC 665


>gi|293189079|ref|ZP_06607806.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
 gi|292821993|gb|EFF80925.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
          Length = 944

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 118/825 (14%), Positives = 221/825 (26%), Gaps = 102/825 (12%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
                    ++  NK  +   E     +   A+ +  ++              +  L+  
Sbjct: 130 RARAGEILAITFTNKAAAEMRERAGALVGDDARRMWVSTFHSACVRLLRYKHEAAGLSSS 189

Query: 78  FTPQKNIITQEINKKSPDLKEK------LKKSQDEFIKIRDRFNTYKMFKSTL---ASLT 128
           FT      +Q + +      +        K         ++       +  T        
Sbjct: 190 FTIYDAQDSQRLIQMVLKAMDVDIKRFTPKMVAARISDAKNELIGPARYAETAGKDPVSR 249

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +       Y++  + +  LDF+DLI+ T DLL +  +   I     +   HIL+DE QDT
Sbjct: 250 IVADAYVEYDKRMRASNALDFDDLIMRTVDLLHENPL---IAEHYHRRFRHILVDEYQDT 306

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +  Q+ ++R+L  D   G      P  L  VGD  QSIY+F GA  + +   +R      
Sbjct: 307 NHAQYVLVRALVGDGKDGV----EPAELTVVGDSDQSIYAFRGATIRNIEEFERDF---- 358

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I L  ++RST +IL+  + V +     +  +  + +      +        
Sbjct: 359 ----TGARTILLEQNYRSTQNILSAANAVIARNTGRRAKNLWTASGDGALITLDAADSEH 414

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                VV + D   +   E             S ++    +   I   +   T F   ++
Sbjct: 415 DEARFVVGEIDRLADSGVEWGDIAVFYRTNAQSRALEELLVRQGIPYRVVGGTRFYERRE 474

Query: 369 --------RVIQAKDILVLVRKRKDTPL---------------------ITFLTRFLKND 399
                   +VI   D  V  R+  + P                           R L   
Sbjct: 475 IKDALAYLQVISNPDDTVAARRVLNVPKRGIGAKAEEAIAAHAAHYGISFGAALRHLWLR 534

Query: 400 YKISVVGNDRFIL--TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                   +   +         D  +         D  +          + S   +    
Sbjct: 535 AGCPAGEGEGIDVDALARSTSPDEASADSSAPVSSDGAAGENPGARDGADESATTVESAA 594

Query: 458 TQR-----HETETVYEYIQKFANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAK 511
                            +                 I  L    A+  S  D    +L   
Sbjct: 595 AAPASSPVESAPETAPEVLGITPRAAKSAAAFWGLIETLRAAEARGASQADILEEVLDRT 654

Query: 512 KGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHS- 566
               +       +    ++ L E  +        +    L + +  +     + +     
Sbjct: 655 GYLAELRRSEDPQDASRVENLAELHSVAGAFAAEAPGGTLADFLERVALVADSDQVPAEG 714

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
               +V +MTVHTAKGLE PVVF+       F H+                         
Sbjct: 715 ERGGQVTLMTVHTAKGLEFPVVFVTGMEDGTFPHQRSLGDESELEEERRL---------- 764

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                                    YV +TRA + L + + +  S      +      + 
Sbjct: 765 ------------------------AYVAITRAREHLYLTRAAVRSAWGTPQEMPPSRFLD 800

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
           D       V++   +    +  +     S  +   +      +  +            S 
Sbjct: 801 DIPAELLDVRRAATSGERMRAPYGGSYGSGSYGSGSYGRSRRSEGRDPWGDTDTGAFGSG 860

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII-HKLL 790
                 +P  +   T          +      +   G  I H  L
Sbjct: 861 RGGASAQPAGVRKVTRMGVAPAAKPAEDKPVLSLKVGDRIKHATL 905


>gi|268316024|ref|YP_003289743.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
 gi|262333558|gb|ACY47355.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
          Length = 681

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/673 (13%), Positives = 197/673 (29%), Gaps = 126/673 (18%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            AS    + +          + +  P+K             ++     +        +  
Sbjct: 130 DASDAADVIDLLRTAHGLHRSGRRFPRKQ-----------TIQAIFSAAASHPDADLETI 178

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              +  +         + L   Y   K+++ ++D++DL+  T +L ++      +  ++ 
Sbjct: 179 LEARYPQFLEHL-EALQALREDYACYKRQHGLMDYDDLLACTIELFRQHPD---VHRQVA 234

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
               H+L+DE QDT+ +Q +++++L                + AVGD+ QSIY F GA+ 
Sbjct: 235 ARCRHVLVDEYQDTNRLQAQIVQALAA----------VHGNVMAVGDDAQSIYRFRGADF 284

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + +    R+             I++L  ++RST  IL + +++     +       S   
Sbjct: 285 RNIFEFPRLFP--------GTRILKLEQNYRSTQPILDLANRIIRRAHHRYDKVLFSERK 336

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              R + +                                           +R +   I 
Sbjct: 337 QGERPAIVPAPD-----------------------------------ERTESRFVCQMIL 361

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +                   + VL R   +   +        N   I  V      L++
Sbjct: 362 ALREQGVPLHQ----------MAVLFRSSHNAFDLEMEL----NRRGIPYVKYGGLKLSE 407

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              +KDL+A  R + + +D  ++  +L+  +         ++       +          
Sbjct: 408 AAHVKDLLAYLRLLENPKDAAAWNRVLQ-LIEGIGPRTAQRLIEWITSADATP--FTLEE 464

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLD 530
                ++   +  +  L+              +       +    R   E     +  L+
Sbjct: 465 RPFSPRYAEALIRLFTLLRQLWETELP-LEAQLTELLHYYRPLCERRYYEDYPKRLQDLE 523

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             ++ + R +  +      ++  LE     ++         V + T+H+AKGLE   VF+
Sbjct: 524 HLVSLSARFQSRAAFLEALVLDPLELTALEVEPLVEDEPPLV-LSTIHSAKGLEFHTVFI 582

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     +                                               +E  RL
Sbjct: 583 IHALEGILPS----------------------------------AYALNDPEALDEELRL 608

Query: 651 LYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           LYV +TRA + L I            S   +    + D          +    + +    
Sbjct: 609 LYVAVTRAREYLFISYPMVRYQAGSGSYLTSPSRFLEDLPEEILEPWVLVEEPTASSAYE 668

Query: 710 IAYEWSTHHPENT 722
           +    ++  P   
Sbjct: 669 LPDSGASALPPGD 681


>gi|146417360|ref|XP_001484649.1| hypothetical protein PGUG_02378 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 830

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/651 (14%), Positives = 190/651 (29%), Gaps = 135/651 (20%)

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               ++   LL          PQ+N   ++  K+           + +   ++ R  T  
Sbjct: 118 IADEKDSIHLLEECLEKIGKNPQQNDDEKQDTKRY----------RAKISSLKSRAITPI 167

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           +FK + +   L   L   Y+E+     +LDF+D ++  ++LL +  V  ++         
Sbjct: 168 VFKKSHSDEYLLS-LYETYQESLTAAKLLDFDDCLVRCHELLLQYPVLNFV--------K 218

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +L+DE QDT+ IQ   ++ + E      +  +    +  VGD  QSIY F  A+     
Sbjct: 219 SVLVDEFQDTNEIQ---LQLMYEFAKGHPSDQNLQNNVLIVGDPDQSIYGFRDAQVGNFK 275

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
           +     + +    G   + I L  ++RSTA IL   + +    +     +  S     ++
Sbjct: 276 KMVTFYENK----GLSCTTILLEENYRSTAGILDFSESIMRQQKLRTIKNLRSQKNATYK 331

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                  G                                        R I Y I  ++ 
Sbjct: 332 PVIASLKGL-----------------------------------EQEGRWIVYQIETLLS 356

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                     + ++ +DI +L R    T  +            I  +        D   +
Sbjct: 357 -------LPGQPLRHEDIAILFRAAYQTRAVEQEL----TRRGIPYLMLRGKAFWDRKEV 405

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
              M   R + ++ D L+ V  L  P     E  +  I  +   +  +            
Sbjct: 406 VVFMDYLRVVSNESDRLALVRTLNYPKRGIGEKAMKLIENELQNSANLVHQTLVAFCKSG 465

Query: 479 SKFQHVIKYIHELIHIA----QFCSPHDFFTLILGAKKGRQQFISRFGNEVI-------- 526
                  + +   + +     +    ++        ++   + +   G +          
Sbjct: 466 QLSSKTKEGLSAYLGLIERCREHLDHYEMTHDKSLLERLSSELLRDSGLQTEFEDDSNKM 525

Query: 527 DVLDEFLNFTLRNE------------------QNSYSSLQELISELEQYPPTIKRAHSAN 568
             + E     L  E                   + ++ +Q+ +  +  Y           
Sbjct: 526 LNITEVQRQLLDFEPQDEQIELFVGGSENDQADDPFNHIQKFVQAIGLYESEESAQSKEK 585

Query: 569 H-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + + + T+H +KGLE   VF+      V                              
Sbjct: 586 STSRITLSTIHGSKGLEWHTVFVPGLSEGVLPAGF------------------------- 620

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                   I    + + +E  R  YV  TRA   L I  +     +     
Sbjct: 621 -------AIADNSEQSADEERRCFYVATTRAKTLLYISSYIEEEGKWGRKP 664


>gi|283852071|ref|ZP_06369345.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283572461|gb|EFC20447.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 1062

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 136/955 (14%), Positives = 276/955 (28%), Gaps = 104/955 (10%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R  +               L        N   ++            A  L    + +  +
Sbjct: 189  RLLVEPLGHAADADALRLGLERRLGGLSNAAGAMLAALDAAGAKAHANFLAFLRKCRDAD 248

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINK-KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            +  +   S F         + + +        DL+      ++            +    
Sbjct: 249  QTDAPPRSAF--ADKACLADCLLKGCRDMAGEDLERLYDSLREAHAVCGRELPVLRAAMG 306

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                  LA  +   +     +  VL            L           ++   + HILI
Sbjct: 307  LAPFGALAARIGEDFPAYLTQMRVLPHSQWPRLVAGRLSGDFGVPDAWCRLGAGLAHILI 366

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QDTS  QW+V+R L+ +            +L+ VGD KQ+IY + G +         
Sbjct: 367  DEFQDTSRTQWDVLRLLSVECLA------RGGSLYLVGDVKQAIYGWRGGDAALFDAAPA 420

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI--RHRSS 300
                   +   +     LP+++RS  +++   ++ F+   +     E +   +  + +++
Sbjct: 421  D---AELSRIAEVIRQTLPVNWRSAPEVVAANNRFFAPLADPAKAREVAAALLGPQLQAA 477

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                 G +       SQ                      S     A R A  +  ++ T+
Sbjct: 478  VPELAGMLSRAFADASQSLPPDRSGPAGHVRVTALPAASSGEYDAAAREA--LVRLLRTE 535

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             +  +G         + VL R       +         +  + VV  +   L DH  I+ 
Sbjct: 536  LLPRHG------PAGVAVLTRSNPQAARVATWL----IEAGMPVVTENSLRLADHPLIRQ 585

Query: 421  LMALGRFILSQEDDLSFVCM-----LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            L A+  F+    D LSF        L   L   S  ++ +   +     ++    +    
Sbjct: 586  LAAMLAFLDYPPDSLSFWAFVSGQELFGDLSGISRTELAEWLCRLPRRGSLSLAFRDRWP 645

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
               ++F      I   +      +P+D    I+           R G+E    L  FL  
Sbjct: 646  EAWTRF------IRPYLRQTGLAAPYDLLREIVTGYGL---LTRRPGDEAF--LRRFLEI 694

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                E    +S+   +    +     K     N   VR++T+H AKGL+ P V +     
Sbjct: 695  AHLAESRGRTSISAFLDFWRELGDDEKVPQPENVEAVRVLTMHKAKGLQFPAVVVPFHHF 754

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                     +  ++ +  ++  +          ++         +     E   LLYV  
Sbjct: 755  ----SGRTGEAPLVTATLEEGEVLAPDLPGLGPDHA------RRRAHELAEQVHLLYVAW 804

Query: 656  TRASDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            TR   +L   +  H     + +        +++ +F  D    +      +         
Sbjct: 805  TRPEVELHAFVPGHGKLREDARYPLPKALALLFAAFGQDPADGEPIRLGDLPDLPPPPPR 864

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                         E     +    ++  K++  +  DI +    +               
Sbjct: 865  ACAAPLPPPAGGAEAVSPPMAWLPRL--KVYRNVARDIRDSLRFSE-------------- 908

Query: 774  LSDNQTFNRGLIIHKLLQ---VIFTLPEHKRKNFITSYC-TKNAKLWPAKEYKNLLLSIT 829
                    RG + H   +        P     +   +       +   A    +L    T
Sbjct: 909  ------KRRGELAHLAAEGFARAGFDPAAPEPDARRAVLTALGGERLDAGLRSSLTREFT 962

Query: 830  RLL----ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
             +L      P    A++           ++     + +   R D +        + ++KT
Sbjct: 963  DMLVWLAGLPQCREALAAG-----FCERELLTDDGERL---RPDLLFCGPAETVVIDFKT 1014

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK---SLVCLLIYVSEPKVFIIPQ 937
             H  P+        H+AQ++ Y   L    P +        L+Y+   +   +  
Sbjct: 1015 GHAQPE--------HVAQVARYLD-LARRLPGRAALPAAGHLVYLDRRECRPVEA 1060


>gi|304390836|ref|ZP_07372788.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
 gi|304325719|gb|EFL92965.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
          Length = 1191

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 143/1018 (14%), Positives = 297/1018 (29%), Gaps = 181/1018 (17%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDEFIKIRD- 112
             A  T+   E    L +  L+       +++   E+ +         K+ QD      + 
Sbjct: 194  GALGTKREGENAENLVNILLSLANDTNSHLVDLAEMKQTYRSYLAAAKRLQDAEGADLNS 253

Query: 113  -RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                       T+     A  +   + E K++  + DF D    T  L+++    + +  
Sbjct: 254  TALRNLDTIIDTMEFGCNATNVIQAFNERKRELLMADFSDQTRETVRLVEQ---LSAVGE 310

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
               +    + +DE QDTS+ Q   +  +  D             + AVGD  Q+IY + G
Sbjct: 311  SQRERFQLVFLDEFQDTSVAQMRFLAGIFRDCA-----------VTAVGDPNQAIYGWRG 359

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A                    ++     L  S+R+ A ILTV +++ +    A       
Sbjct: 360  ASAAS----MEDFGSIFCTDPRQLLTRTLSTSWRNDAVILTVSNRISAELAGA------- 408

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   ++         +   +     ++                Q  +    ++ +  
Sbjct: 409  ----PAVAAERNIPRNQDVQSAISKPLQARPGANPGIVYGI-----QTLTDLQQSQAVVN 459

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                         +      +     VL R +   P +    R       I         
Sbjct: 460  FFRLWQAQRVKLQSEGVPAEKLPTAAVLCRAKNAIPGLVESLR----RAGIPYQTRGMQG 515

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE-DDIFKICTQRHETETVYEYI 470
            + +   ++ + A      + E   S + +L       S+   + +   +    + V E  
Sbjct: 516  ILEDPGVRLVRAALEITDNPEKSASLLLLLDRYRLGLSDLQAVGQNRHRFTPYQIVMEGG 575

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDF--FTLILGAKKGRQQFISRFGNEVIDV 528
             + +    ++ + +   + EL   A F +P         L      QQ       +    
Sbjct: 576  AQVSTEAQTRLEKLRGILTELKDNAPFATPLVLARLAHRLLDLDIEQQLPGSP-CQAGAY 634

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTI----KRAHSANHNEVRIMTVHTAKGLE 584
            + EFLN      +   ++L   ++ L                 ++  V+I+T+H AKGLE
Sbjct: 635  V-EFLNLVRDFGRTPGATLSGFLNWLSAGEDEEASFADLDFEVDNAAVQIITMHAAKGLE 693

Query: 585  SPVVFLVDTGSQVFSHKHI------KKMHIMPSLNDDPGIP----------IWIPQSKSR 628
               V + +     F           + +   P  +D   +P              +   +
Sbjct: 694  WDWVAVPNLNKSTFPSVRGEIWVTQRDVLPYPLRSDRDHLPELELKTQTLLTATGRVSKK 753

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
              ++    +  +     E +RL YV  TRA  +L++         KK    + + +V   
Sbjct: 754  KGLLETFKEDAEHYALREESRLAYVAFTRAKSRLLLGHCWFERQTKKGRPPSQFFLVEQD 813

Query: 689  FHNDERVKKIKLTNSINKD----------------------------------------- 707
                       L +S   D                                         
Sbjct: 814  PQQHIFSDADSLASSGGADIIQPDSSTVPVVESSEGGAVGVANLLTPFNAETFAQEVARL 873

Query: 708  --EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
              E    EW      + P + E   +   D    P    +  + D  +   +  + +D+ 
Sbjct: 874  GIETPDVEWPDTVVTSIPDKIENPNQDRFDAGIWPALPLTQTRLDFAQAVQVTEAALDSG 933

Query: 766  GKTNLESLLSDNQTFNR--------------GLII---------HK-------LLQVIFT 795
              +   S  +D +T  R              G ++         H        LLQ +  
Sbjct: 934  KFSGGISQDADEETERRLSQLLHQPQTRLGTGDLLGRISATGMAHLAQDSEGYLLQRLRP 993

Query: 796  LPE-----HKRKNFITSYCTKN-------------AKLWPAKEYKNLLLSITRLLENPMM 837
            LP+      +   ++ ++                    +  ++ + L     R  +  ++
Sbjct: 994  LPQQPSVAARLGTYMHAWIASQLENEDTFIFDAGTEDGFTPEQRELLHKWQQRYEDLELL 1053

Query: 838  TTAMSCDSYSEVSVSGKINCPK-KDIIISGRIDQISIS--QQNIFIFEYKTHHHVPQEIE 894
                       V   G++   +    +I  RID          I+I ++KT         
Sbjct: 1054 RRLRGPQ----VEFDGELYVAEAGGAVIPLRIDAQFEEVQTGKIWIIDWKTGRRP----- 1104

Query: 895  HIPYTHIA---QLSIYEKILKDSYPNKS---LVCLLIYVS----EPKVFIIPQNKLNK 942
              P  +     QL IY       +P      ++C  I+++      ++  + Q+ L++
Sbjct: 1105 -TPENYAQWLHQLGIYRLYWLQEHPETPAEDIICAYIFLNEDNPAKQLLTL-QDILDE 1160


>gi|187918214|ref|YP_001883777.1| DNA helicase II [Borrelia hermsii DAH]
 gi|119861062|gb|AAX16857.1| DNA helicase II [Borrelia hermsii DAH]
          Length = 697

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/542 (15%), Positives = 170/542 (31%), Gaps = 125/542 (23%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K +N  LDF DLI+ T  +L+       I+ ++ ++   I +DE QDT+  Q+
Sbjct: 168 IEFYEQEKSRNNALDFADLILKTVLMLRN---CEDIKMRVQRKFKAIFVDEYQDTNYAQF 224

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ L  +                VGDE QSIYSF GA  + +L  +++          
Sbjct: 225 LFLKELYCENMH----------FMVVGDEDQSIYSFRGARVENILEFEKVFNN------- 267

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             S   L  ++RS+  I+ V + V S   N       +   +  +               
Sbjct: 268 -VSKYYLVQNYRSSLSIVNVSNDVISKNRNRYEKVIFTENKMGKK--------------- 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           +          + E ++++      E++                                
Sbjct: 312 IKFFVFRSPAEEAEYFSNFLLEDELETA-------------------------------- 339

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
               VL R    +             + I           +   IKD+++L R  ++++D
Sbjct: 340 ----VLYRFNYQSLQFEKAF----LKHNIPHKILGSIRFYERGEIKDVISLLRLFVNKKD 391

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISKFQHVIK 486
            +SF+ ++  P     +    KI    ++ +  ++        ++             + 
Sbjct: 392 KISFLRVINKPARGIGKTTTDKIIAMLNDRDVNFDLILASKRAVENLKGKARDSLVAFLS 451

Query: 487 YIHEL---IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
              +L   I    + +  +F   +         +     ++    +DE ++  +      
Sbjct: 452 LYDDLEKNIRRDVYINLSEFIKDVAIRAGFWDFYQKFDKDDKFKNIDELISSGVEYSG-- 509

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S + L+  LE    +      +  + V + ++H  KGLE   V +      +   +  
Sbjct: 510 --SFEGLVIFLENSSLSPLIHGDS-KSSVLLSSIHGVKGLEFDRVIISGLEKGLLPAEIE 566

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           +                                               YV +TRA  +LI
Sbjct: 567 ELTEERIEEERRL----------------------------------FYVAITRAKFELI 592

Query: 664 IC 665
           + 
Sbjct: 593 VT 594


>gi|153954093|ref|YP_001394858.1| ATP-dependent DNA helicase [Clostridium kluyveri DSM 555]
 gi|219854706|ref|YP_002471828.1| hypothetical protein CKR_1363 [Clostridium kluyveri NBRC 12016]
 gi|146346974|gb|EDK33510.1| ATP-dependent DNA helicase [Clostridium kluyveri DSM 555]
 gi|219568430|dbj|BAH06414.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 670

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/541 (17%), Positives = 182/541 (33%), Gaps = 113/541 (20%)

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            YE+ K KN ++DF+DL +   ++L+       I         +IL+DE QD   +Q ++
Sbjct: 162 EYEKYKSKNNLMDFDDLQLEVKNILETD---KNILKYYSNLFTYILVDEFQDCDRLQIDI 218

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ +               ++FAVGDE Q IY F G+ P  ++   R  ++         
Sbjct: 219 LKLI-----------GKNSSVFAVGDEDQCIYGFRGSHPICMVDFNRYFEE--------G 259

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             + L  ++RS  +++ +   +    +N      +S+   R   +               
Sbjct: 260 QKLFLKKNYRSVYNVVKMSQNLICNNKNRNLKCVESSRMNRGNINFK------------- 306

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                                    S    A  +A+ I  +I              + +D
Sbjct: 307 ----------------------IFESEKEQACYLAHIIKQIIEAG---------KCRCRD 335

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           I +L R   +   I            I     + ++    H   KDL+   +  L   D 
Sbjct: 336 IALLYRTNIECVNIIDSL----LKNDIKFKFLHGKYNFYSHFICKDLICYFKLALDMCDK 391

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
            SF+ ++  P     + +I K+   R   E  +E ++      + + +  I  +   I  
Sbjct: 392 ESFISIVNKPFRYIGKINIEKVRNNR-VKENCFEILKNIEGIPVFQIK-AIDKLQRNIKK 449

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ--NSYSSLQELIS 552
            +   P +    IL   + +              ++E+     + +Q    ++S+ E + 
Sbjct: 450 LRKIKPKERVKFILDKLEYKDYLHKHCEKLAS-NMEEYYYVIEQFKQICEDFTSIYEFLK 508

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            +E     + +      + V + T+H  KG+E   VF+++       H +          
Sbjct: 509 HVETAEEFLHKNLQEE-DAVILSTLHGVKGMEFKNVFIINCNEGSIPHSNSI-------- 559

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                        +  EE  RL YVG+TRA D L +C  S    
Sbjct: 560 ----------------------------LNNLEEERRLFYVGITRAIDNLYLCSTSTIKG 591

Query: 673 E 673
            
Sbjct: 592 R 592


>gi|32968002|gb|AAP92515.1| DNA helicase [Borrelia hermsii]
          Length = 646

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/542 (15%), Positives = 170/542 (31%), Gaps = 125/542 (23%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K +N  LDF DLI+ T  +L+       I+ ++ ++   I +DE QDT+  Q+
Sbjct: 168 IEFYEQEKSRNNALDFADLILKTVLMLRN---CEDIKMRVQRKFKAIFVDEYQDTNYAQF 224

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             ++ L  +                VGDE QSIYSF GA  + +L  +++          
Sbjct: 225 LFLKELYCENMH----------FMVVGDEDQSIYSFRGARVENILEFEKVFNN------- 267

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             S   L  ++RS+  I+ V + V S   N       +   +  +               
Sbjct: 268 -VSKYYLVQNYRSSLSIVNVSNDVISKNRNRYEKVIFTENKMGKK--------------- 311

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           +          + E ++++      E++                                
Sbjct: 312 IKFFVFRSPAEEAEYFSNFLLEDELETA-------------------------------- 339

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
               VL R    +             + I           +   IKD+++L R  ++++D
Sbjct: 340 ----VLYRFNYQSLQFEKAF----LKHNIPHKILGSIRFYERGEIKDVISLLRLFVNKKD 391

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-------YIQKFANCGISKFQHVIK 486
            +SF+ ++  P     +    KI    ++ +  ++        ++             + 
Sbjct: 392 KISFLRVINKPARGIGKTTTDKIIAMLNDRDVNFDLILASKRAVENLKGKARDSLVAFLS 451

Query: 487 YIHEL---IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
              +L   I    + +  +F   +         +     ++    +DE ++  +      
Sbjct: 452 LYDDLEKNIRRDVYINLSEFIKDVAIRAGFWDFYQKFDKDDKFKNIDELISSGVEYSG-- 509

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S + L+  LE    +      +  + V + ++H  KGLE   V +      +   +  
Sbjct: 510 --SFEGLVIFLENSSLSPLIHGDS-KSSVLLSSIHGVKGLEFDRVIISGLEKGLLPAEIE 566

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           +                                               YV +TRA  +LI
Sbjct: 567 ELTEERIEEERRL----------------------------------FYVAITRAKFELI 592

Query: 664 IC 665
           + 
Sbjct: 593 VT 594


>gi|322437047|ref|YP_004219259.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
 gi|321164774|gb|ADW70479.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
          Length = 929

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/575 (14%), Positives = 182/575 (31%), Gaps = 90/575 (15%)

Query: 8   SLNESYELIYKDLWP--LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  E  E + K +    L    +S  + +    +      +    + L +        ++
Sbjct: 64  AAKEMAERVDKIIGHSSLAKPTLSTFHSFCVRVLRRDIEALQVGGKGLTRTFAIYDETDQ 123

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            +++ S         +  I  + +  +      ++  +++  I  ++ F        T  
Sbjct: 124 QAVVKSAL------KRLGIDDKSLKPRV--ALGRISWAKNHMIDPQEYFLAS-----TNP 170

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                 ++   Y++   K   LDF+DL++ T  LLK    +   R + ++   +++IDE 
Sbjct: 171 LEEKIAHIFEIYKKELNKANALDFDDLLLETVRLLKSSGET---RARYNRRYQYVMIDEY 227

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+++ L  D           + +  VGDE QSIYS+ GA+ K +L  ++   
Sbjct: 228 QDTNKPQYELMKLLAGD----------HKNICVVGDEDQSIYSWRGADIKNILDFEKDFP 277

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I L  ++RST  IL     V +     +G +                 
Sbjct: 278 A--------VQTIRLEQNYRSTQMILEGASAVVAQNTQRKGKN----------------- 312

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW        ++            D   +       A  IA  I   +        
Sbjct: 313 ----LW-------TAREGGSLIGLYEAPDGENE-------ALFIADRIKKYLREAGQTET 354

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            +          VL R    + L+    R     Y+I+      F   D   +KD+++  
Sbjct: 355 EE-----PARCAVLYRTNSQSRLVEEALR----RYQIAYHMVGGFSFYDRAEVKDILSYM 405

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQK------FANCGI 478
           + + +  D ++    + SP     +  +  +         + ++ I +           +
Sbjct: 406 KLVQNPHDSVALGRSVNSPPRGIGKTTMETLERMALTTGMSTWDAIARAIEEKLLPARAL 465

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
                  + I +   +            +       ++ +S   +   + ++   +    
Sbjct: 466 QALSGFKRLIEDARAMLGPGFAEKLAEDVEAETADDEEDVSFGFSVEAEPVETGADAAAD 525

Query: 539 --NEQNSYSSL-QELISELEQYPPTIKRAHSANHN 570
              + +           E+            A HN
Sbjct: 526 TSFDTSFNFGFDFGPSEEISTLAAENSVDSDAAHN 560



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 81/297 (27%), Gaps = 44/297 (14%)

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSS 546
                    +  +    +       +        E    I+ L E  N     ++     
Sbjct: 605 AFRKAGDAATLPELIKFLNERSGYIRALEDEATPESFSRIENLKELANAAQDAQERG--- 661

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            + L   L+           +   +V +MT+H AKGLE P+VFL      +F H      
Sbjct: 662 -ETLHEFLDHAALVSDADSYSAEAKVTLMTLHAAKGLEFPLVFLAGMEEGLFPHSRTFTD 720

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                                 EE  RL YVGMTRA D L++  
Sbjct: 721 PTG----------------------------------LEEERRLCYVGMTRAMDTLVMT- 745

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                  ++         V   F  +   + ++   S       +  +ST +P+     +
Sbjct: 746 --RARYRRRYGSDMPEASVASRFLEEVPGRLVEDLGSPAAQPQFSSSYSTPYPQRGRFGQ 803

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
           +   ++         +  S  +     P              +  +    ++    G
Sbjct: 804 KPGYEEGDRHYSYEDEDQSGERKAAAAPGRQMAGQQSPAKSLDNVAAFFASRGGAPG 860


>gi|217077082|ref|YP_002334798.1| ATP-dependent DNA helicase [Thermosipho africanus TCF52B]
 gi|217036935|gb|ACJ75457.1| ATP-dependent DNA helicase [Thermosipho africanus TCF52B]
          Length = 632

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 112/620 (18%), Positives = 212/620 (34%), Gaps = 139/620 (22%)

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKL---KKSQDEFIKIRDRFNTY 117
             E+   ++ S         +  II +  +K  P+ K+ L       +    +R+    Y
Sbjct: 112 DSEDAKDVMESA--------RSQIIPKSESKTVPNAKQLLIINSYMNNTLCSLREAIAKY 163

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                     +L + +   Y++ K +   +D++DL+INT  +L        IR K     
Sbjct: 164 NPRYLEQE--SLIEQILIKYQQEKMQQNSVDYDDLLINTLQILSTNKA---IRLKESNRY 218

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             IL+DE QDT+++Q++++  L+E              L  VGD+ QSIYSF GA  + V
Sbjct: 219 KWILVDEFQDTNIVQFQIVNLLSE----------VHGNLMVVGDDAQSIYSFRGARFENV 268

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L  ++              I ++  ++RS+ +I+ +++++       + L    +T ++ 
Sbjct: 269 LDFQKE-----------AKIFKIQTNYRSSQEIVNLINEMLPKNSIHKTLRAKRSTGVKP 317

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                                              FD   +       A  +A  I N  
Sbjct: 318 ------------------------------FLVQVFDHYDE-------ADFVANEILNYN 340

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                        +   DI VL R    +       +   + + I          T+   
Sbjct: 341 KQG----------VSLNDIAVLYRAHSHS----LELQLELSKHGIPFKLYSGLRFTETAH 386

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           +KD +A  +  ++ E+ +S++ +LK       +          + +E +        N  
Sbjct: 387 VKDCLAFLKVSVNYEEKISWIRLLKLAK-GIGK------IKSNNISEKLASKGLDAFNEI 439

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNFT 536
             K     K    ++   +  +P +   +      + + + I     +  + +   +   
Sbjct: 440 KEKSSDFNKIKEIILKSQEIKNPGERIKIFYEEFYEEKMEEIFDDARDRKEDVVRLIEMA 499

Query: 537 LRNEQNSYSSLQELISEL---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
              E     + +  +S++   E Y    +        +V + TVH AKGLE  VVF++  
Sbjct: 500 SFYE-----TPENFLSDILVSESYEIAQEGKSDKETEKVTLTTVHQAKGLEWKVVFILSV 554

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               F H                                   I  LK    +E  RL YV
Sbjct: 555 NPGDFPH-----------------------------------IMSLKDGALDEEERLFYV 579

Query: 654 GMTRASDQLIICKHSNTSNE 673
            +TRA D L I   +  S+ 
Sbjct: 580 AITRAKDFLYIIYSAGGSSR 599


>gi|298368781|ref|ZP_06980099.1| exodeoxyribonuclease V, beta subunit [Neisseria sp. oral taxon 014
            str. F0314]
 gi|298282784|gb|EFI24271.1| exodeoxyribonuclease V, beta subunit [Neisseria sp. oral taxon 014
            str. F0314]
          Length = 1211

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 135/1014 (13%), Positives = 275/1014 (27%), Gaps = 194/1014 (19%)

Query: 15   LIYKDLWPL-PYFQVSDINK--YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
             +    W + P    S      +  +  E       +    L + +  +        L +
Sbjct: 246  ELEAAFWRIHPALNGSSYRGNTFTGVFAELNAAAGYESLPKLSKTTHEKLPMFSTEALEN 305

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                 +            +  +    + L     +     +                LA 
Sbjct: 306  GLKKGQ----------SPDAAAFAALQDLANFGRDLNSAAEAEQNTLTLLCLELLDYLAD 355

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L+      KK      F+DL+++ +  L     +  +   + +     LIDE QDT  +
Sbjct: 356  ALSE----QKKARRERGFDDLLLDVHRALTDNPHAETLAQTVARNWRVALIDEFQDTDPL 411

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+E+ + +           +    LF VGD KQ+IYSF GA+    L+            
Sbjct: 412  QYEIFQKIF---------ITQGNPLFLVGDPKQAIYSFRGADIYAYLQAAED-------- 454

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                    L  ++RS A ++  +  +F      +    +        ++R          
Sbjct: 455  --ARHHYTLATNYRSHAKLVDSIGALFRR--KNRPFVLERIDYADVGAARK--------- 501

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSL--PQESSASILARRIAYTISN-MIGTDTIFSNGKK 368
                S+        Q  W    D+    ++      A   A  I+  +   +    N K 
Sbjct: 502  ---TSRLTPARPAVQVRWLHGADAEPPNKDILRKRAAEYCADEIAAALNDAEEGRLNFKD 558

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R +Q+ DI VLVR   +  +I    +    +  I  V   R  +      +   +L  F 
Sbjct: 559  RPLQSGDIAVLVRTHNEGSMIARALK----NRGIQSVLLHRTSVFASAEARATASLLEFW 614

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L           L   LF ++ D++  +                      ++    +   
Sbjct: 615  LDPRRTEPLRFALAGVLFRYTADELHALNRD------------------EARLLDWMDSA 656

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
                   +    +              + +S  G   +    + L      E     +  
Sbjct: 657  QTAHEQWKQQGIYAAMQHFSARHGIEARLLSHDGERSLTNYHQILELLAE-EDAHNRNPS 715

Query: 549  ELISEL-----------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             L   L           +           ++   V+I+T+H +KGL+ P+V+        
Sbjct: 716  SLYQWLLEQISLASGDKKTSGENDLIRLESDEALVKIVTMHASKGLQYPLVYCPFVWDAQ 775

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
               K      +  S      +                    L      E  RLLYV +TR
Sbjct: 776  -PLKSGDWQILHRSGGAAELLAGHQLD--------DADQARLADEETSERLRLLYVALTR 826

Query: 658  ASDQLIICKHS-------------NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            A +QL I                     +    +     +   S    +      L ++ 
Sbjct: 827  AEEQLNIYAACCDGTPDNTFAYLLEGRADSSRGETQKAYLHRKSGKGGKTALMQMLEDNW 886

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK-----------------LFSPI 747
             +    A + +     +          +                           L   +
Sbjct: 887  RQFIARAPDNTDFAFADKAPAEAALQSRRGGGITYRAAVIPKRSFDIVRHTSFTGLSRHV 946

Query: 748  KNDINEPYILNPS------------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
            K   +E   L P+             I + G T+ E +    +  N G+ +H++L+    
Sbjct: 947  KTRDDEREELQPALDPAENIERPSENIVSDGLTDAEDIHHFPRGTNAGICLHEILEKFDF 1006

Query: 796  -LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS---- 850
             L   ++   +    ++               ++  +L+   +T   +  + +++     
Sbjct: 1007 SLSAAEQAETVRESLSRYGF------EPRWQPAVHTMLDRCRLTPLTAAYALADIPPQNR 1060

Query: 851  -----------------------------------VSGKINCPKKDIIISGRIDQISISQ 875
                                                +  ++       +SG ID +    
Sbjct: 1061 LPEMGFTLYMEDFGLERLRAWLARPNSGLPPECAEAARILDFKDVQGFLSGFIDMVYQDS 1120

Query: 876  QNIF-IFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNKS 919
              +  I +YK++H       + P           +  Q  IY   +   Y  + 
Sbjct: 1121 DGLVCIIDYKSNHLGNNAEAYTPQTMNEAMAHHHYYLQALIYAIAVARYYTLRR 1174


>gi|111023338|ref|YP_706310.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
 gi|110822868|gb|ABG98152.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1]
          Length = 1098

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 138/1041 (13%), Positives = 276/1041 (26%), Gaps = 196/1041 (18%)

Query: 7    LSLNESYELIY--KDLWPLPYFQVSDINKYVSLSMETGNPTILK------------KAQT 52
            ++  E  E +               ++   +    E   P   +                
Sbjct: 72   IAGGEDPESVLVLTQSKRAAGRVREEVTAALIGHDEHHGPRATREPLVRTVHSYAFAVLR 131

Query: 53   LQQASQTQCIEER----------FSLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLK 101
            LQ A+                    +L            + +     +   + +L++ + 
Sbjct: 132  LQAAAHGNPPPRLITGAEQDAVLREMLHGDIADGGEMWPERLRPALALGGFAVELRDLML 191

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV------------LDF 149
            +S +    +          + +      A    A YE                    LD 
Sbjct: 192  RSSER--GLGPEDLIRLGQRHSRPEWVAAGMFAARYEHGMLLRGAVGVEAPEATAPALDA 249

Query: 150  EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
             +LI               +       + H+L+D+ Q       E++R L          
Sbjct: 250  AELIGAALTAFATDPD---LLRTERARVRHLLVDDAQHLDPQAAELVRLL---------- 296

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +  RT    GD  QSIY F GA+P  +                    + LP++FRS+A+
Sbjct: 297  GTGTRTTVVAGDPDQSIYGFRGADPTFLADLAD---------KGDPRQVLLPVNFRSSAE 347

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            + T   ++ S               + HRS    Q G       + +             
Sbjct: 348  VATTAARITSRLPGH----------LPHRSWSPAQDGGRTSVRVLSTVAK---------- 387

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                            A  +A T+                 +   ++ V+VR     P  
Sbjct: 388  ---------------EAALVADTLRR---------AHLLDGVPWSEMAVIVRS---VPRA 420

Query: 390  TFLTRFLKNDYKISV-VGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFN 447
                R       + V        L     +  LM + R +   +      + +L  P+  
Sbjct: 421  LAPLRRALLGAGVPVTTAASELPLARQHGVSGLMLVLRALSGQEFTGEDALALLAGPVGG 480

Query: 448  FSEDDIFKICTQR----------------------HETETVYEYIQKFANCGISKFQHVI 485
                 + ++                           ET++      K  +   +    V+
Sbjct: 481  AEPVALRRLRRGLRRAELASGGDRDSAELLRLVLVGETDSTRRVTAKLTDVEAASLNRVL 540

Query: 486  KYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFIS------RFGNEVIDVLD---EFLNF 535
              + +            D       A    +++ +        G +    LD      + 
Sbjct: 541  SVLRKAKVPLDRGRGIEDVLWAAWQATGLERRWSAVSARGGPIGAQADRDLDAVVALFDA 600

Query: 536  TLRN-EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDT 593
                 ++   + L   +  L        R  SA   + V +++ H+A G E  VV +   
Sbjct: 601  AASYVDRLPRAQLAGFVDYLTGQAIPTTRNVSAVPVDAVSVLSAHSAAGREWDVVAVAGV 660

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               ++     +   +           I +    S  +  +            E  RL  V
Sbjct: 661  QEGLWPSLRARGSLL------GTEALIDLTAGVSDGSETAADWMSRTAPLLAEERRLFLV 714

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI--------------- 698
              +RA   L++    + S +       + D +     + + V+ +               
Sbjct: 715  ACSRARRSLLVTAVDSASGDADLVHSRFVDELLSGDQDSDVVEAVVQAEDPATRVLALPA 774

Query: 699  ---KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK-----ND 750
               +L + +   +    + +        L R                   P       N+
Sbjct: 775  LVAELRSVVCDPDVAESDPARQERAARQLARLADAGVRGAHPDQWYGTAEPSTGVALWNE 834

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQT-------FNRGLIIHKLLQVIFTLPEHKRKN 803
             + P  L+PSTID      L  LL  +            G ++H L+Q +       +  
Sbjct: 835  EDGPVSLSPSTIDLLNTCPLRWLLERHGGTDGDNTHAIAGTLVHTLVQALAGRIPPDQVA 894

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI- 862
                    +  L      +  L     +L         +    +EV V   ++   +   
Sbjct: 895  RALENAWDSIDLGSQWYSRRELDRTRDMLATFTAWLGNTRSELTEVGVEVAVDGVLEPRE 954

Query: 863  ------IISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY--EKILKD 913
                   + GRID++    +    I + KT      + +       AQL+ Y     +  
Sbjct: 955  EGSPTIRLRGRIDRLERDAEGRPVIVDVKTARSPVTKDDAQQ---HAQLAAYQVAAAVGA 1011

Query: 914  SYPN---KSLVCLLIYVSEPK 931
                   K     L++V++P 
Sbjct: 1012 IDGEPASKPGGARLVFVAKPH 1032


>gi|296139998|ref|YP_003647241.1| exodeoxyribonuclease V [Tsukamurella paurometabola DSM 20162]
 gi|296028132|gb|ADG78902.1| Exodeoxyribonuclease V [Tsukamurella paurometabola DSM 20162]
          Length = 1110

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 121/880 (13%), Positives = 252/880 (28%), Gaps = 181/880 (20%)

Query: 148  DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            DF+DL     + L           ++ +  + +L+DE QDT  +QW+++ +         
Sbjct: 240  DFDDLQGLLREALVDEVHGEAACSRLRELYSVVLVDEFQDTDPVQWDILHA--------- 290

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                  RTL  VGD KQ+IY+F GAE    L   +             +   L ++ RS 
Sbjct: 291  -AFHGHRTLVLVGDPKQAIYAFRGAEVYSYLEASK----------AATTHQALDVNRRSD 339

Query: 268  ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
              ++T +  ++   + A G ++     +    +     G        +    S     + 
Sbjct: 340  GPLVTALQHLYG--DVALGDTQIVVGPVSAARTTPRLAGR----PLRLRYLGSNGVGPKT 393

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
             +        +++    +A  I   +  +   + +   G+ R ++ +DI VLVRK +   
Sbjct: 394  QYGIPRVPGVRKAVLRDVASDI---VRALDAGEELDDGGEPRTVEPRDIAVLVRKNEHIA 450

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
                  + L     ++ V      +    A  D + L + + +            +PLF 
Sbjct: 451  ----ELQSLLQGLGVAAVAAGGASVFTTAAATDWLRLLQALENAGRADRARLAALTPLFE 506

Query: 448  FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            F+  D+ +                     G      +   +  L  +         F ++
Sbjct: 507  FTARDLDE--------------------RGDELVSEISGRLRTLAGVFARSGFAAMFDVL 546

Query: 508  LGAKKGRQQFISRFGNEV----IDVLDEFLNFTLRNEQNSYSSLQELISELEQ------- 556
                +   + + R G E     +  + E +             L      L +       
Sbjct: 547  AAGSRFDARLLGRIGGERTLTDLRHVAELVQHAT---VTLGLGLGAATRWLAERIADPGL 603

Query: 557  -YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                   R  + +   V++MTVH +KGL+ P+V+L                    +    
Sbjct: 604  GGTADPARRLATDTQAVQLMTVHASKGLQFPIVYLPFAWDSFGGFGDRDTFIFHENGERL 663

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
              +           +     +   +     E  RLLYVG TRA  +L++    + + +  
Sbjct: 664  VDV------GGKDAHGYEARLAISRDEDAAEELRLLYVGATRAQSRLVLWWAPSATTKG- 716

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                +    +  S     RV   +     + +            E++             
Sbjct: 717  ----SPLHRLLFSEVGGGRVPAGQAPIPRDDEAGARLREWAAPVESSVSIEAVDPAAPAP 772

Query: 736  EQKIPKKLFSPIKNDINEPYILNPS---------------------------TIDTKGKT 768
            EQ  P     P          ++PS                            ++ +   
Sbjct: 773  EQWRPPFAGFPSLELGRATRRIDPSWRRTSYSALVADAAHGPLAAPDTGSEPDVEDRADE 832

Query: 769  NLESLLSDNQ---------------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
             +E                          G ++H++L+ + T         +        
Sbjct: 833  PVEEPADSATTAPDAPPSLMNGLSGGTVFGNLVHEILEHVDTGAPDIAAEVLARCRAAAE 892

Query: 814  KLWPAKEYKNLLLSITRLLENPM---------MTTAMSCDSYSEVSVSGKINCPKK---- 860
                A +  ++  ++T +L  P+         +      D  +E+     +         
Sbjct: 893  FGTTADDPADVAAALTAVLHTPLGTGELSTLTLAEVAPADHLAEMDFELPLADTGSATLG 952

Query: 861  -------------------------------DIIISGRIDQISI----SQQNIFIFEYKT 885
                                              ++G ID +      +     I +YKT
Sbjct: 953  TIADLLERHLPDGDPLAPYASRLREVPGAALRGFLTGSIDSVLRVRTGAADRFVIVDYKT 1012

Query: 886  HHHVPQEI------------EHIPYTHIAQLSIYEKILKD 913
            +     ++            E +   ++ Q  +Y   L  
Sbjct: 1013 NRFARGDLSTADYTPDRMAGEMMGSNYVLQALLYSVALHR 1052


>gi|117928983|ref|YP_873534.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
 gi|117649446|gb|ABK53548.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
          Length = 1095

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 119/1011 (11%), Positives = 264/1011 (26%), Gaps = 117/1011 (11%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYF---QVSDINKYVSLSMETGNPTILKKAQTLQQAS 57
            L+ R  L L  +        +    F       I +         +       + L +  
Sbjct: 85   LRRRIALRLGRTSREPLARTFHSYAFGVLCADAIQRGEPPPRLLTSAEQDVIIRELLRGD 144

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
              +        L     T+ F              + +L+E L+++      +       
Sbjct: 145  LDRGATGWPERLRPALPTRGF--------------ARELREFLQQAVQR--GLTPDDVAR 188

Query: 118  KMFKSTLASLTLAKYLNAHYEE--AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
               ++              Y +  A +     D  +LI+    LL++      +      
Sbjct: 189  LGRQAGRDDWVAIGRFAREYSQVTALRDAAGYDPAELILAATALLQEHP---QLLESCRV 245

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                +++DE ++T   Q  ++R++T               L    D  QS+Y F GA+P 
Sbjct: 246  RHALVVVDEYEETDPAQRRLLRAITS-----------GAALVIAADPDQSVYGFRGADPL 294

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN--AQGLSEDSTT 293
             V               Q+  ++ L  ++R    +L  V ++          G+S  +  
Sbjct: 295  GVREFLSDFA------DQRPRVVVLGRAYRGGPALLAAVRRLAERLPVVVPPGVSAAAYR 348

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             +   +              V     +  +               + S  + A       
Sbjct: 349  GLAVGAEAGAVRALAGAGAGVAGAGAAAADGDGSVDVRAGAGADGDGSVDVRAFATPGAQ 408

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFIL 412
            +  I    +        +    + VLVR     P      R       + V   +    +
Sbjct: 409  AAYIA-YHLRHAHLVEGLGWTAMAVLVRSAAQIPP----LRRALTAAGVPVRVPEQSSPI 463

Query: 413  TDHLAIKDLMALGRFIL-SQEDDLSF---------VCMLKSPLFNFSEDDIFKICT---- 458
             D   ++ L+   R        D+             ++  P+       + ++      
Sbjct: 464  VDVPIVRHLLLALRIAAGQPLLDVERAPTAAASLAEELVAGPIGRADPLQLRRLRIALRR 523

Query: 459  -------QRHETETVYEYIQKFANCGISKFQHVIKYIHELIH----IAQFCSPHDFFTLI 507
                   +R     + + +    +  +   Q     +               P      +
Sbjct: 524  LDRAAGGERSSAVVLAQVLNDPRDLEVIDEQAAAPALRVARAIEAGRRAVTEPAATAETV 583

Query: 508  LGAKKGRQQFISRFGNEVI-------------DVLDEFLNFTLRN-EQNSYSSLQELISE 553
            L          +    + +             D +        R  ++   +        
Sbjct: 584  LWEIWNATGLATELYAQALSGGAVGAAADRDLDAVMALFAAASRYVDRLPRAGAALFADY 643

Query: 554  L--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            L  ++ P     A +   + V ++T H AK  E  VV L      V+     +   +   
Sbjct: 644  LLGQEIPTDTLAARAPEPDGVDLLTAHAAKSREWDVVVLAGVQEGVWPDLRRRGSLLGLR 703

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
               D         +          ++  + +   E  RL Y+  +RA  +LI+   S   
Sbjct: 704  DFLDVLDGRIADAADRGPGGSIRTLEE-RSAALAEERRLCYLAASRARRKLIVTAVSGDQ 762

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
                        +  D        + + L + +      A                +   
Sbjct: 763  EIPSRFLDDIDPLDADERPLTRPPRGLDLPSLLGDLRRAAETADDAVARRAAGHLAQLAA 822

Query: 732  QLMDEQKIPKKLFSPIK------NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR--- 782
              +           P           +EP  ++PS ++   +  L  LL       R   
Sbjct: 823  AGIPGAAPDGWYGLPAPSTDQPLRRDDEPVPVSPSRLELFTRCPLRWLLESCGGRGRSSA 882

Query: 783  ----GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
                G  +H+            R+    +    +         +    +         + 
Sbjct: 883  SQVVGTAVHRAAATFSVDVAQLRERLDAALADTDLGTGWFAAAQRDRAAAM----VERLA 938

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ-NIFIFEYKTHHHVPQEIEHIP 897
              M+ +    ++V           +++GR+D++       +++ + KT          + 
Sbjct: 939  AWMARNPRRLLAVERDFQVTVGRALLTGRVDRLEQDDDGRLYVVDLKTGRRA-VRKADLA 997

Query: 898  YTHIAQLSIYEKIL--KDSYPNK-SLVCLLIYVSE--PKVFIIPQNKLNKA 943
                 QL  Y+  +        +      L+++ E  P+     Q  L  A
Sbjct: 998  EH--PQLGAYQVAVVEGAFDEGRTPAGAALLFLDEDRPEPVEWGQAPLEAA 1046


>gi|52785047|ref|YP_090876.1| YjcD [Bacillus licheniformis ATCC 14580]
 gi|163119356|ref|YP_078477.2| putative ATP-dependent DNA helicase YjcD [Bacillus licheniformis
           ATCC 14580]
 gi|52347549|gb|AAU40183.1| YjcD [Bacillus licheniformis ATCC 14580]
 gi|145902862|gb|AAU22839.2| putative ATP-dependent DNA helicase YjcD [Bacillus licheniformis
           ATCC 14580]
          Length = 760

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/564 (16%), Positives = 164/564 (29%), Gaps = 114/564 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L  HYEE K      DF+D+      L +++     I  +     + ILIDE QD +
Sbjct: 298 VHRLYRHYEEQKAARRQFDFDDMASACWQLFQEQPD---ILKRYQTRFHAILIDEFQDIN 354

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+ +I+ L           S    L  VGD+ QSIY+F G+ P  +L  ++   K   
Sbjct: 355 PVQYAIIKLLA----------SPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYPK--- 401

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   + L  ++RS+  I+   D V    +     +  +    R +           
Sbjct: 402 -----AKTVRLTTNYRSSHPIVASADMVVRKNKKRFPKTLSAARDDRQKPL--------- 447

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                  +D   +       A  I   I   I            
Sbjct: 448 -------------------LFYPYDEEEE-------AIMIVSDIQEKIEMG--------- 472

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFI 428
             +  D  +L R       I        +   I                ++ ++A     
Sbjct: 473 -AKPDDFAILYRTNSSGRAIFERL----HQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLS 527

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            +Q+D  +   +L  P     +  +  +       +       +            IK I
Sbjct: 528 QNQDDAEAVKQIL--PALFLKQSALNTLKALSITEDCTMVQALEKLTDIKPFQLDKIKKI 585

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-----NEVIDVLDEFLNFTLRNEQNS 543
                  +   P +  +              R        +  D L +      +     
Sbjct: 586 VPFFPGLKTMKPVEAISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKKF---- 641

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             ++ E +  ++      K+    +   V+++T+H AKGLE   V+++        H   
Sbjct: 642 -KTIPEFLEHVDHMRAAEKQKA--DGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFA 698

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                         +  +   ++  EE  RLLYV MTRA D+L 
Sbjct: 699 L-----------------------------ETARKGDETALEEERRLLYVAMTRAEDRLY 729

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYD 687
           I   S          R    ++  
Sbjct: 730 ISVPSFRRGRTAYRSRFLQPILRP 753


>gi|222476099|ref|YP_002564620.1| UvrD/REP helicase [Halorubrum lacusprofundi ATCC 49239]
 gi|222454470|gb|ACM58734.1| UvrD/REP helicase [Halorubrum lacusprofundi ATCC 49239]
          Length = 948

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 133/884 (15%), Positives = 265/884 (29%), Gaps = 175/884 (19%)

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
            +     +P+  E      ++ +        +   +           +   Y E      
Sbjct: 220 DKCYLPDAPEEDEIRGGWGEKQVPAAVARLVFDEQREN--LKNFVHDVYHEYLEFALSRN 277

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            L+F  L +    LL         R + D    +++IDE QD+S IQ+++   L +    
Sbjct: 278 YLNFSFLQLFAFVLLCDDH-----RLRDDVAFEYVMIDEFQDSSEIQFKLALLLAD---- 328

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI-------- 257
                     +  VGD KQSIYSF  A  + +   +    +      +            
Sbjct: 329 -------TNNVCVVGDWKQSIYSFQYAAVENITEFESRLDRFVDELNEDHERVSWATRSI 381

Query: 258 --IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             IEL  ++RST DIL                   S  ++   ++    +    + +++V
Sbjct: 382 IDIELDENYRSTQDILDF-----------------SEHSLVTPAASTDDIDEAAVRDRIV 424

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD--TIFSNGKKRVIQA 373
           S   +  +          +S  +          +   I  ++G D   +  +G+ R+ + 
Sbjct: 425 SLSSNASHE---------NSQIEAIQHEDEHEAVLTKIHEIVGNDAYQVEEDGELRLPEH 475

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            DI VL R R            +  +Y + +       L      K L+A  R +   E 
Sbjct: 476 GDIAVLTRTRDFGRG----LLSVAEEYGLPMAYEGGIELFRSDPAKLLLAWLRIL---ES 528

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D      +      ++ D++  +         +  +  +                     
Sbjct: 529 DAERGWAVVLEEAGYTLDEVKHVLDSEEYPANMQAFKSE--------------------- 567

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
           +A   +       +         +         DVL   +         +   L   I  
Sbjct: 568 LASLETVGGISQRVFSQYDYDGAYA--------DVLLTTIQSVHSATTLTRGDLIRFIER 619

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
             +   T +   SA  N V + T+H AKGLE P+V L +  S  F         I     
Sbjct: 620 GIEDGSTHEVHASAGMNSVTVQTIHAAKGLEHPIVVLANMNSHRFPPSGGNSNAITFDDP 679

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ----EEYNRLLYVGMTRASDQLIICKHSN 669
                           +I  +    + +       +E  RLLYV MTRA   L+      
Sbjct: 680 IGLRQRKLYADDHGYPHIHDNWRSDVLRKCLPRGYDEERRLLYVAMTRAESHLVFAA--- 736

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                     +    + +   + E ++     + I++      + +   P+        T
Sbjct: 737 --------GESPNTFIEELPVDLEELEPDVQDDDIDETTQAHLQIAVPAPDGPVGHSPHT 788

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
           + +                                    ++   + D +    G   H+ 
Sbjct: 789 LMR-----------------------------------DDVFEDVDDGRGTAFGTRTHEF 813

Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
            +                   ++ +     E       I   +++      +  +   E 
Sbjct: 814 AERY--------------ILEEDVEPSNDDER-----HIKSFIDS------LDGELRVEE 848

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                +    + + ISG +D + I    + I ++KT      + E     +  QLS+Y  
Sbjct: 849 DAYLPLTVDGEQVTISGIVDLVHIRPNTVGIIDFKTDLSRHAQGE-----YRKQLSVYHH 903

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFII---PQNKLNKAFAEISTK 950
           +L + +P++ +   + Y +E     +    +  L +  AEIST 
Sbjct: 904 VLDEWFPDREVTAEIFYTAEGTRVDVEPFSRADLVEIVAEISTS 947


>gi|83719885|ref|YP_441989.1| superfamily I DNA/RNA helicase [Burkholderia thailandensis E264]
 gi|83653710|gb|ABC37773.1| Superfamily I DNA and RNA helicases [Burkholderia thailandensis
           E264]
          Length = 920

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 115/831 (13%), Positives = 241/831 (29%), Gaps = 152/831 (18%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            ++   +++    +      +   ++ L   T+A +L   YE+   K   LD+  ++   
Sbjct: 147 LKRYTDTRNYVSALAILREDHPCDEALLEDNTVASHL-KIYEDLTDKKGYLDYSGILNRA 205

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
              L +      +R ++   + H+++DE QD + +Q  ++  L                +
Sbjct: 206 VAELTRN---RELRERLALRVKHVIVDEYQDVNPVQEAIVAEL----------RQLGADI 252

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ Q+IY + G+E + +L   R             + + L  +FRS+  ++ +  +
Sbjct: 253 CVVGDDDQTIYQWRGSEVQNILTFDRRY--------NDVTQVRLEENFRSSEGVVALARE 304

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
             S   +       +T    +                             +     FDS 
Sbjct: 305 FISHLNHRLPKEMKATHAQSY--------------------------EDGDIVALGFDSP 338

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +E      A  IA T   +     +  +  +R I   D+ VL+R               
Sbjct: 339 EEE------AEYIAKTCMAL-RGVVVHESSSERGISWSDMAVLLRS---VRRDAPAVTAA 388

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
            +  ++  V      L     ++    L  F+  + +        +      ++  +   
Sbjct: 389 LDAVRVPYVITGMDNLFQKEEVEAARQLFYFLAGEIEMNELRAAWQRADLGITKHALEGA 448

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                E     +  +       +  +  I ++ +           +            ++
Sbjct: 449 IAAAAEARVDMQDAEIGQFKVYNLQRQFIAFMEK----------SELRE---------ER 489

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNS--------YSSLQELISELEQYPPTIKRAHSA- 567
                G  V   L +F       E           Y S    +    +         +  
Sbjct: 490 VPGGRGEIVFYNLGKFSQAISDFESIHFHSDPVEKYKSFAGFLRFHAENAYPEGWQDNGF 549

Query: 568 -NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            + + VRIMTVH AKGL+ PVVF+       F  K     +    L  +        +  
Sbjct: 550 VSPDAVRIMTVHQAKGLQWPVVFIPQLVKNRFPAKGGGGRNAWHLLPSEAFSNAARYRGG 609

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           + +                   RL YV +TRA   L +    +  N        +Y+ V 
Sbjct: 610 ADD-----------------ERRLFYVAVTRAQKYLHMTWAPHEGNRTAQVASDFYNEV- 651

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                             +K      +      + TP  +       +    +      P
Sbjct: 652 ----------------LASKYVKRRVQNYATRQQLTPAPKASVANVTLSFSDVKYFFECP 695

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP---EHKRKN 803
            +  +   Y  N                  ++    G  +H  L  +       E     
Sbjct: 696 YQFKLRILYGFN---------------APLDEALGYGKSLHDALAEVHARALRGETIDSR 740

Query: 804 FITSYCTKN--AKLWPAKEYKNLLLSITRLLEN--PMMTTAMSCDSYSEVSVSGKINCPK 859
                  ++  A          L  +  +++           +   +SE ++   +    
Sbjct: 741 EAEELIERHLRAPYAYPDLKDKLKSAAVKVVAAYIRKNAAEFNNLEFSEKAIEIAL---G 797

Query: 860 KDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
             + ++GRID +       + I + K++     + E +      QL IY  
Sbjct: 798 DGVSVAGRIDLVRRMDTDEVTIVDLKSN--DRAQAEAVTE---TQLHIYAL 843


>gi|220931259|ref|YP_002508167.1| UvrD/REP helicase [Halothermothrix orenii H 168]
 gi|219992569|gb|ACL69172.1| UvrD/REP helicase [Halothermothrix orenii H 168]
          Length = 1036

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 137/882 (15%), Positives = 275/882 (31%), Gaps = 113/882 (12%)

Query: 52   TLQQASQTQCIEERFSLL---SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
             + Q  + +  E R   +      F  + F    N+  + +      L+ K ++  ++  
Sbjct: 233  QMSQYLELETHEARKEFIIKNKDSFFKESFWNGNNLRGKAMAPFKEHLEVKYREFLEKMA 292

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN--------TNDLL 160
                     +M             +   Y+  K K       D+             DLL
Sbjct: 293  GY---IYNEEMIPYEEEVFKFYSRIFEIYDRIKFKEKTFTHTDISNYTYKYLREEALDLL 349

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
              + VS +    +  E+  + IDE QDTS++QW++++ L +            R + AVG
Sbjct: 350  DGKKVSDYFYELLGSEVTTLFIDEFQDTSILQWKILKPLIDRC----------RNVIAVG 399

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            DEKQSIY + G E +   R          +         L + +RS  +I+  +++ F+ 
Sbjct: 400  DEKQSIYGWRGGEKELFSRL---------DKILDGESESLKVCYRSEKEIIKFINRFFTG 450

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             E     +E      +        +G   L  +  S+  +  + +++      +      
Sbjct: 451  LEIDWEYNEVKHLPEKQEGFIEILLGGDSLKNRTNSKKFNNMSEEKQRQIIELNE----K 506

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                L R+I   I N+                   + +L R   D   I        +  
Sbjct: 507  VTVNLKRKIVERIKNISD--------------LSGVGILARSNDDLSDIATEL----DKK 548

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             I  +   +  L +H A+K L  L  ++    D L  +  L+S L       +  +   R
Sbjct: 549  GIPYILESKDSLINHEAVKPLYFLLGYLT-YNDYLELIKFLRSDLVGLDNQGLKYLLRNR 607

Query: 461  HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
               E       +      +  Q  +  I  L  +       +    ++        F   
Sbjct: 608  DRVEKFM--RGRGVKLSNALLQKALSEIRRLKALNYR----ELTNTLIQKSGLMDLFGDN 661

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--YPPTIKRAHSANHNEVRIMTVH 578
             G   +  +  F     +      S L++ +  +E+      +K+      N V++MT+H
Sbjct: 662  SG--ALKNIYHFFKLMRQF-----SCLKDFMDYIEENKNSDELKQVGVKEENAVKLMTIH 714

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL--- 635
             +KGL     F      +    +  +    +   ++   +  ++            L   
Sbjct: 715  KSKGLSFETEFFYWCPGKRKGGRSNRMEIYVRFDDNFEELEDYLLTHSRYTRYFEYLGFN 774

Query: 636  -IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
              K  ++    E    +YV +TR    L +        E     + W          ++ 
Sbjct: 775  FNKEQEEKELIEEINNVYVALTRPEKNLYLYIEGPRIFEVDKPGQEWKG--KKYSFYEKA 832

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            + K    NS+            +  E    E    +  L            P     + P
Sbjct: 833  ILKGAGVNSLCDLIEGRRLGHFNSEEKDRGEENILLPDL-----------EPYFQPGDLP 881

Query: 755  YILNPS-TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
              L  S   +     NL+  +   +    GL IH  L+ I    + +R         +  
Sbjct: 882  EELLDSFNDNKDLNMNLKMEIDRIE----GLAIHYYLEHIQYNSQEERDYARKMVLARYG 937

Query: 814  KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873
             +    +   +   +   ++N                V  +      + +   RID++ +
Sbjct: 938  NILGPVKTDEIFERVESFIKNNPG--YFEDR----WKVFTEYEIKDGNQV--YRIDRLLV 989

Query: 874  SQQ--NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             +    I I +YK+     +           QL  Y+ +L++
Sbjct: 990  DEGGKEIKIIDYKSGETREKT----------QLEKYKDLLEE 1021


>gi|315605038|ref|ZP_07880092.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313317|gb|EFU61380.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 932

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/771 (14%), Positives = 210/771 (27%), Gaps = 140/771 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L   +                  + ++A  L      +     
Sbjct: 110 GAGSGKTRVLTHRIAYLLATGRARAGQILAITFTNKAAAEMRERAGALVGGDARRMWVST 169

Query: 66  FSLLSSFFLT---QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F       L    +      +    +       ++  LK    +  +   +    ++  +
Sbjct: 170 FHSACVRLLRYEHEAAGLSSSFTIYDAQDSQRLIQMVLKAMDVDIKRFTPKMVAARISDA 229

Query: 123 TLASL---------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
               +                +       Y++  + +  LDF+DLI+ T +LL+   +  
Sbjct: 230 KNELIGPARYGETAGKDPVSRIVADAYVEYDKRMRASNALDFDDLIMRTVELLRDNPL-- 287

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I     +   HIL+DE QDT+  Q+ ++R+L  D   G      P  L  VGD  QSIY
Sbjct: 288 -IAEHYHRRFRHILVDEYQDTNHAQYVLVRTLVGDGKDGVA----PAELTVVGDSDQSIY 342

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA  + +   +R               I L  ++RST +IL+  + V +     +  
Sbjct: 343 AFRGATIRNIEEFERDF--------SGARTILLEQNYRSTQNILSAANAVIARNTGRRAK 394

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +  +                                    S      +L    S    AR
Sbjct: 395 NLWTA-----------------------------------SGDGALITLDAADSEHDEAR 419

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I  +               +  DI V  R    +         L     I     
Sbjct: 420 FVVAEIDRLADAG----------AEWGDIAVFYRTNAQSR----ALEELLVRQGIPYRVV 465

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                 +   IKD +A  + + + +D ++   +L  P           I          +
Sbjct: 466 GGTRFYERREIKDALAYLQVVSNPDDTVAARRILNVPKRGIGAKAEEAIAEHAARYGISF 525

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
               +             + I ++  +A+  SP         +        +       D
Sbjct: 526 GAALRHLWQRAGCPAGEGEGI-DVEALARSTSPAADSAR--SSAPVSSDDAAGETPGARD 582

Query: 528 VLDE--------------------------------------FLNFTLRNEQNSYSSLQE 549
             DE                                       +      E    S    
Sbjct: 583 GADESVAAAPASSSSAEGAPETAPEVAGITPRAAKAAAAFWGLIEALRAAEAGGASQADI 642

Query: 550 LISELE-------QYPPTIKRAHSANHNEVRIMTVHTAKGLESP----------VVFLVD 592
           L   L+              +  S   N   + +V  A   E+P          V  + D
Sbjct: 643 LEEVLDRTGYLAQLRRSEDPQDASRVENLAELHSVAGAFAAEAPGASLADFLERVALVAD 702

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
           +       +   ++ +M            +  +   +           +S  EE  RL Y
Sbjct: 703 SDQVPAEGERGGQVTLMTVHTAKGLEFPTVFVTGMEDGTFPHQRSLADESELEEERRLAY 762

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           V +TRA ++L + + +  S      +      + D       V++   +  
Sbjct: 763 VAITRARERLYLTRAAVRSAWGTPQEMPPSRFIDDIPAELLDVRRAATSGE 813


>gi|218261891|ref|ZP_03476570.1| hypothetical protein PRABACTJOHN_02241 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223705|gb|EEC96355.1| hypothetical protein PRABACTJOHN_02241 [Parabacteroides johnsonii
           DSM 18315]
          Length = 527

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 86/549 (15%), Positives = 155/549 (28%), Gaps = 109/549 (19%)

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           R +  VGD+ QSIYSF GA    +L+ K               I +L  ++RST +I+  
Sbjct: 1   RRICVVGDDAQSIYSFRGANIDNILQFKNQYP--------GCRIFKLERNYRSTQNIVNA 52

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + +          +  S            +   V +        +              
Sbjct: 53  ANSLIHKNTKQIQKTVYSE---------KEEGSKVAICSSYSDYEEGYA----------- 92

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                          +A  I++M          + R     D  +L R    + ++    
Sbjct: 93  ---------------VAGKINDM----------RMRNYDYADFAILYRTNAQSRILEEAL 127

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
           R       I               +KD+++  R I++  D+ +F  +L  P     +  +
Sbjct: 128 R----KRGIPYKIYGGLSFYQRKEVKDVISYLRLIVNPHDEEAFKRVLNYPARGIGDTTL 183

Query: 454 FKIC-TQRHETETVY-------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
            K+         +++        Y     N    K     + I   I      S  +   
Sbjct: 184 NKLIVAATDHNVSLWTVLNDPIGYALPVNNGTAKKLSDFRELISGFIERNVKLSAEEIAA 243

Query: 506 LILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRN------EQNSYSSLQELISELEQ 556
            ++               E     + L E L            E   + SL + +SE+  
Sbjct: 244 AVVKESGIVSVLFQDRSVEGISKQENLQELLKGIAEFCEIRREEGAEHVSLADFLSEVSL 303

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        N+V +MTVH AKGLE   VF+V     +F     K            
Sbjct: 304 LTDQD-NDKEEQANKVTMMTVHAAKGLEFRNVFVVGLEEDLFPSAMSKDNP--------- 353

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                       EE  RL YV +TRA +  ++    +     +S
Sbjct: 354 -------------------------RAVEEERRLFYVAITRAEENCVLTYAKSRYRNGQS 388

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
              +    + D             T+        +  +S+   +   +E +  +  +   
Sbjct: 389 AMCSPSRFLRDIDTKYIYASADVATDGSFAGTRRSSAFSSPFRQPKAMEEDAYVSPVAQA 448

Query: 737 QKIPKKLFS 745
                +L  
Sbjct: 449 VGRQARLTR 457


>gi|148243810|ref|YP_001220049.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|146400373|gb|ABQ28907.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum JF-5]
          Length = 717

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 114/677 (16%), Positives = 207/677 (30%), Gaps = 131/677 (19%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I           ++D   +       G   +   A+   L  A    
Sbjct: 91  RRAAAEMIRRAERISVQAMGGKTGAMTDALTWAGTFHGIGARLLRDYAEQIGLDPAFTIH 150

Query: 61  CIEERFSLLSSFFLTQKF-TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F T ++   T+        +  +   ++     I         
Sbjct: 151 DREDSADLMNLVRHELGFSTTERRFPTKST---CLSIYSRCVNTELSLDDILPT-----T 202

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           F    +     ++L   Y EAK++  VLD++DL++    ++ +  ++  I        +H
Sbjct: 203 FPWCSSWEAELQHLFGAYVEAKQRQNVLDYDDLLLYWAQMVSEPALAEDI----GGRFDH 258

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIY+F GA  + +L 
Sbjct: 259 VLVDEYQDTNRLQSSILLAL----------KPGGRGLTVVGDDAQSIYAFRGATVRNILD 308

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                            II L  ++RST  IL   + V  + +     +           
Sbjct: 309 FPGAFS-------PAADIITLEQNYRSTTAILAAANGVIGLAKERFTKN----------- 350

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW    S   ++  PQ        D           AR I   +      
Sbjct: 351 ----------LW----SNRTTETLPQLVHVRDDADQ----------ARFIVERVLENREA 386

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      +  K   VL R    +  +            I  V        D   IK
Sbjct: 387 G----------MTLKQQAVLFRTSHHSGALEVEL----TRRNIPFVKFGGLKFLDSAHIK 432

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           D++A+ R+  +  D ++   +++  L         K+             +        +
Sbjct: 433 DVIAVLRWAENPRDRVAGFRVMQ-LLPGVGPTSAAKVMDHMQGAADPIGALGDAPTPPRA 491

Query: 480 K--FQHVIKYIHELIHIAQFCSPH-DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
           +  + H I+ I  L   +       +               + R  ++    L + +   
Sbjct: 492 RSDWTHFIETIRTLRSRSAIWPGELELIRRWYEPH------LDRMHDDASVRLADLIQL- 544

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVD 592
                + Y S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++
Sbjct: 545 -EQIASGYPSRERFLTELTLDPPDATSDQAGVPLLDEDYLNLSTIHSAKGQEFQSVFVLN 603

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                                                          +    EE  RLLY
Sbjct: 604 VVDGCMPSDLGTG----------------------------------QSQEIEEERRLLY 629

Query: 653 VGMTRASDQLIICKHSN 669
           V MTRA D L +     
Sbjct: 630 VAMTRAKDDLHLMIPQR 646


>gi|315655698|ref|ZP_07908596.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
 gi|315489762|gb|EFU79389.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
          Length = 1191

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 149/1027 (14%), Positives = 293/1027 (28%), Gaps = 180/1027 (17%)

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDEFIKIRD- 112
             A  T+   E    L +  L+       +++   E+ +         ++ QD      + 
Sbjct: 194  GALGTKREGENAENLVNILLSLANDTNSHLVDLAEMKQTYRSYHAAARRLQDTESADLNS 253

Query: 113  -RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                       T+     A  +   + E K++  + DF D    T  L+++      +  
Sbjct: 254  TALRNLDTIIDTMEFGCNATNIIQAFNERKRELLMADFSDQTRETVRLVEQ---LPAVGE 310

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
               +    + +DE QDTS+ Q   +  +  D             + AVGD  Q+IY + G
Sbjct: 311  SQRERFQLVFLDEFQDTSVAQMRFLAGIFRDCA-----------VTAVGDPNQAIYGWRG 359

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A    +     I    +           L +S+R+ A IL V +++ +    A  ++ + 
Sbjct: 360  ASAASMEDFGSIFCTDSHQ----LLTRTLSISWRNDAVILAVSNRISAELTGAPAVAAER 415

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                            VQ       Q     NP           L Q  +     R    
Sbjct: 416  NIPRNQD---------VQSAISKPLQARPGANPGIVYGIQTLTDLQQSQAVVNFFRLWQA 466

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                + G                   VL R +   P +    R       I         
Sbjct: 467  QRVKLQGEGVPAEKLPTA-------AVLCRAKNAIPGLVESLR----RAGIPYQTRGMQG 515

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE-DDIFKICTQRHETETVYEYI 470
            + +   ++ + A      + E   S + +L       S+   + +   +    + V E  
Sbjct: 516  ILEDPGVRLVRAALEITDNPEKSASLLLLLDRYRLGLSDLQAVGQNRHRFTPYQIVMEGG 575

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDF--FTLILGAKKGRQQFISRFGNEVIDV 528
             + +    ++ + +   + EL   A F +P         L      QQ           V
Sbjct: 576  AQVSTEAQARLEKLRGILTELKDNAPFATPLVLARLAHRLLDLDIEQQLPGSSCQAGTYV 635

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTI----KRAHSANHNEVRIMTVHTAKGLE 584
              EFLN      +   ++L   ++ L                 ++  V+I+T+H AKGLE
Sbjct: 636  --EFLNLVRDFGRTPGATLSGFLNWLSAGEDEEASFADLDFEVDNAAVQIITMHAAKGLE 693

Query: 585  SPVVFLVDTGSQVFSHKHI------KKMHIMPSLNDDPGIP----------IWIPQSKSR 628
               V + +     F           + +   P  +D   +P              +   +
Sbjct: 694  WDWVAVPNLNKSTFPSVRGEIWVTQRDVLPYPLRSDRDHLPELELKTQTLLTATGRVSKK 753

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
              ++    +  +     E +RL YV  TRA  +L++         KK    + + +V   
Sbjct: 754  KGLLETFKEDAEHYALREESRLAYVAFTRAKSRLLLGHCWFERQTKKGRPPSQFFLVEQD 813

Query: 689  FHNDERVKKIKLTNSINKD----------------------------------------- 707
                       L +S   +                                         
Sbjct: 814  PQQHIFSDADSLASSGGANIIQSDSSTVSVVESSEGGAVGAANLLTPFNAETFAQEVARL 873

Query: 708  --EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
              E    +W      + P + E   +   D    P       + D  +      + +D+ 
Sbjct: 874  GIETPDVDWPDTIVTSIPDKIENPNQDRFDAGIWPALPLIQTRPDFAQAVQATEAALDSG 933

Query: 766  GKTNLESLLSDNQTFNR--------------GLII---------HK-------LLQVIFT 795
              +   S  +D +   R              G ++         H        LLQ +  
Sbjct: 934  KFSGGISQDADEEAERRLSQLLHQPQTRLGTGDLLGRISATGMAHLAQDSEGYLLQRLRP 993

Query: 796  LPE-----HKRKNFITSYCTKN-------------AKLWPAKEYKNLLLSITRLLENPMM 837
            LP+      +   ++ ++                    +  ++ + L     R  +  ++
Sbjct: 994  LPQQPSVAARLGTYMHAWIASQLENEDTFIFDVGTEDGFTPEQRELLHKWQQRYEDLELL 1053

Query: 838  TTAMSCDSYSEVSVSGKINCPK-KDIIISGRIDQISISQ--QNIFIFEYKTHHHVPQEIE 894
                       V   G++   +    +I  RID          I+I ++KT         
Sbjct: 1054 RRLRGPQ----VEFDGELYLEEAGGAVIPLRIDAQFEEAQTGKIWIIDWKTGRRP----- 1104

Query: 895  HIPYTHIA---QLSIYEKILKDSYPNKS---LVCLLIYVS----EPKVFIIPQNKLNKAF 944
              P  +     QL IY       +P      ++C  I+++      ++  +         
Sbjct: 1105 -TPENYAQWLHQLGIYRLYWLQEHPETPAEDIICAYIFLNEDNPAKQLLTLQDILDELGI 1163

Query: 945  AEISTKI 951
            AE S  +
Sbjct: 1164 AEYSRNL 1170


>gi|15643994|ref|NP_229043.1| ATP-dependent DNA helicase [Thermotoga maritima MSB8]
 gi|4981792|gb|AAD36313.1|AE001779_15 ATP-dependent DNA helicase [Thermotoga maritima MSB8]
          Length = 648

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 98/552 (17%), Positives = 190/552 (34%), Gaps = 123/552 (22%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                  +   YE+ K+   V+D+EDL+     L ++      IR +  +    IL+DE 
Sbjct: 184 LKEEISEIFDLYEQEKRSQNVVDYEDLLFYAYRLFEEN---KEIRDREAERFLWILVDEF 240

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q++++  L+          S    + AVGD+ QSIYSF GA  + V    R   
Sbjct: 241 QDTNYVQYKIVEHLS----------SKHGNILAVGDDAQSIYSFRGARYENVEDFIR--- 287

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I ++  ++RST  I+  ++ +       + L       ++         
Sbjct: 288 ------VPGTKIFKIQTNYRSTESIVKFINAMLPRKSVPKELKPVKKDGMK--------P 333

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
             V+ W+                                 AR ++  I  +I        
Sbjct: 334 VVVKTWD-----------------------------RYEEARFVSQRILELIEEG----- 359

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 + ++I VL R    +       +      +I          T+   +KD+++  
Sbjct: 360 -----FKPEEIAVLYRSHSHS----LELQMELVRSRIDFRVLSGPRFTESAHVKDVLSFL 410

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC--TQRHETETVYEYIQKFANCGISKFQH 483
           R + +  D  +++   K   +   +    KI      +  E +  + +        ++  
Sbjct: 411 RIVQNPRDKSAWLRAAK-LFYGIGDRTASKIADLASAYVEEGLDPFQELKKVSFSGEYSR 469

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--EVIDVLDEFLNFTLRNEQ 541
            I  + ++  +    SP +    +L      +   +R+ +  E    L+  +    R   
Sbjct: 470 FIDILDQIRKL---DSPGEMIERVLS-SFYSEYLEARYPDFREREMDLERLVEIASRY-- 523

Query: 542 NSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              +SL+  +++L       I+R  S    +V + TVH AKGLE  VVF++      F +
Sbjct: 524 ---TSLESFLTDLAVTENVEIEREISQKEGKVTLTTVHQAKGLEWRVVFVISVNPGDFPN 580

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                 + +   +E  R+ YV +TRA +
Sbjct: 581 -----------------------------------YFAISEGNLDEEERIFYVAITRAKE 605

Query: 661 QLIICKHSNTSN 672
           QL I      ++
Sbjct: 606 QLYISYQVTGTS 617


>gi|313500580|gb|ADR61946.1| RecB [Pseudomonas putida BIRD-1]
          Length = 874

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/692 (15%), Positives = 213/692 (30%), Gaps = 69/692 (9%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK-KAQTLQQASQTQC 61
                +  +        +         ++ +    ++        K +A+  +      C
Sbjct: 215 AALIQASLQQRGAQLARIKAPWAQWAEELRQICRDALAAKQVDGRKMQARYFEPWFDKLC 274

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                  L    L   FT        E  K  P     L   Q    +++   +      
Sbjct: 275 AWASDEQLVELDLGTGFTRLTPTGMAEAWKGEPPEHPALNAMQHLQQQLQALDSPDAPL- 333

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                   A +++A +E  K++   + F+D+++     L   +    +   I ++    L
Sbjct: 334 ----LEHAASWVSARFEVEKRRRAEMGFDDMLVRLQHALA-SEAGERLASLIREQFPVAL 388

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDT  +Q+ +   + +      + + +   LF +GD KQ+IY+F GA+    L  +
Sbjct: 389 IDEFQDTDPVQYGIFERIYQ-----ISENRAETGLFMIGDPKQAIYAFRGADIYTYLAAR 443

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG------LSEDSTTTI 295
           R              +  L  ++RS+  ++  V++VF   E  +         E     +
Sbjct: 444 RA---------TSGRLHSLDTNYRSSKAMVAAVNQVFLQAEAREAGRGAFLFREADDNPL 494

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                R    G   L +  VS        + E      + +        LA   A  I  
Sbjct: 495 PFIEVRAKGRGEQLLIDGEVSAALQCWQLESE------EPVSSSVYRQQLAASCASHIVA 548

Query: 356 MIGTDT------IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           ++            + G+ R     DI +LVR   +  ++             SV  +D+
Sbjct: 549 LLNGGQQGTAGFQNAEGELRACLPSDIAILVRDGHEAQMVRAELAA---RGVRSVYLSDK 605

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
             +       DL+A  +     + +      L S     S   + ++           E 
Sbjct: 606 DSVFAAQEAHDLLAWLKACAEPDSERLLKAALASLTLGLSLAALDRLNQD--------ER 657

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
           + +        ++   +    L  +            ++    G +   +         L
Sbjct: 658 VWESWVMRFRLYRDTWQRQGVLPMLRHLLHDFQLPRTLIRRSDGERVLTNLL------HL 711

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            E L           + ++ L   L    Q          ++   V+++T+H +KGLE P
Sbjct: 712 AELLQQAAGELDGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYP 771

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           +V+L    +          +    S  +                   + I+        E
Sbjct: 772 LVYLPFICTSKPVDGSRLPLAWHDSEGNAHLTLTPD----------QEQIERADDERLAE 821

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
             RLLYV +TRA     +          KS+Q
Sbjct: 822 DLRLLYVALTRAQHACWLGVADLKRGNLKSSQ 853


>gi|291037246|ref|ZP_06568210.1| UvrD/REP helicase [Gluconacetobacter xylinus NBRC 3288]
          Length = 683

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 205/701 (29%), Gaps = 141/701 (20%)

Query: 38  SMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT---------QKFTPQKNIITQE 88
           ++         +   L+     +  E+  +++     T         Q+  P      ++
Sbjct: 99  ALAARQLRAEPEVAQLRSGFDIRDAEDSLAIVRRLIRTVPKEKLPVPQEGAPGDARQIKK 158

Query: 89  INKKSPDLKEKLK---KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
           + ++   LKE L     +      +  R  +  +     +       L   Y+   ++  
Sbjct: 159 MAERIARLKEDLITPVAAFAHVESLIGRRQSANLHVDHES-WRFVVGLYGRYQAILREQN 217

Query: 146 VLDFEDLIIN-TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             DF DL++  T  +L      A    +       ++ DE QD +  Q+  +  L+    
Sbjct: 218 AADFGDLLMWPTLAMLHD----AAYHRRWSARFTAVMADEFQDVNRAQYLWLTLLSR--- 270

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +   LF VGD+ QSIYS+ GA+   +    R                +L  +F
Sbjct: 271 -------TSGELFCVGDDSQSIYSWRGAKVGFLRNFPREFPA--------VKTFKLEENF 315

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST++IL   + V S   +    +  +         R G+   +++              
Sbjct: 316 RSTSNILDASNAVISFDPSRIEKTLFT---------RRGEGLPIEVLGF----------- 355

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                          S A+  A  I   I     T           +   D+ ++ R+ +
Sbjct: 356 ---------------SYATEEAAAIVREIGRRAATG----------VAWHDMAIIYRQNR 390

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED---DLSFVCML 441
               +           ++              A+KD +AL       ++   D +F  M 
Sbjct: 391 LFRTLEEAL----LHARVPYEIIGDVGFYWRTAVKDALALLTLCAWPDERRSDEAFRRMA 446

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEY---IQKFANCGISKFQHVIKYIHELIHIAQFC 498
             P        + KI  +               + +   +   Q  ++ + + I   +  
Sbjct: 447 NRPPRGLGARGLGKIEIEASAGGLSLCAAATRTRLSPRCVVALQGFVQILRQ-IGCRKGE 505

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRNEQNSYSSLQELISELE 555
           S  +  T +L A        +   +E     + L E +       +            LE
Sbjct: 506 SLGERLTGLLEATGYLDMLRADDSDEAATQRENLAELIELAQGFRRVE--------HLLE 557

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + V++MT+H +KGLE   VFL      +F     +           
Sbjct: 558 HAALAGGAPGEKGRDRVQLMTMHRSKGLEFRHVFLPAWEEAIFPGAMSRNPG-------- 609

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                         E  RL YV +TRA +Q  I           
Sbjct: 610 ------------------------------EERRLAYVALTRAMEQATITFCDYRQGGSS 639

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
              R   ++  ++  +     + +   S  +   +  E + 
Sbjct: 640 RPSRFIDEIPLENRVSSWNHGRNEPRQSDGRWRQVDQELNA 680


>gi|239908036|ref|YP_002954777.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
 gi|239797902|dbj|BAH76891.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
          Length = 1060

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 130/945 (13%), Positives = 249/945 (26%), Gaps = 88/945 (9%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
             R     +            L        N   +L        +   A  L    + +  
Sbjct: 188  ARLLADPDCGDAAPEALRLGLARRLGELQNAADALLRAIEAEKLSGNAHFLTFLRKCRDC 247

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ-DEFIKIRDRFNTYKMFK 121
            +   +L SS F  +    +   + +    K     ++L  +        R +        
Sbjct: 248  DNAAALPSSAFAAKASLAEC--LNKASRDKVTPALDRLHAAMTASHDVCRRQGPVLLAAS 305

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                 L LA+ L A +     +  +L            L   D       ++   + HIL
Sbjct: 306  RLAPFLALARRLAADFPAYLARMRMLPQSQWGRLVAARLAGEDGVPDAWCRMGSGLAHIL 365

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT+  QWEV+R L  +            +L+ VGD KQ+IY + G +        
Sbjct: 366  VDEFQDTARSQWEVLRLLALESLS------RGGSLYLVGDVKQAIYGWRGGDAALFDEAP 419

Query: 242  RINQKRATNAGQKFSIIE--LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                       Q    I   LP ++RS   I+   ++ F    +     + +   +    
Sbjct: 420  AD-----PELTQVAEPIFDALPHNWRSAPAIVGANNRFFGRLSDPAAAQQTTEALLGEGL 474

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            +         +                        +                 +  ++  
Sbjct: 475  AAAAPELAAAIGRAFAGATQEVRPDYHGPQGHVRVTALNAEDPDTYHDAARGALLTLLKA 534

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            + I  +G         + VL R                    I VV  +   L DH  I 
Sbjct: 535  ELIPRHG------PGGVAVLTRTNPQAARCAAWLVA----AGIEVVTENSLRLADHPLIG 584

Query: 420  DLMALGRFILSQEDDLSFVCM-----LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             L A+  F+    D L+F        L   L      ++           ++    +   
Sbjct: 585  QLAAMLAFLDYPPDSLAFWAFVSGQELFGDLSGIDRRELAGWLAGLPRRASLSLAFKARW 644

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                 +       I   +  +   SP+D    ++    G +    R  +E    +  FL 
Sbjct: 645  PEVWQRL------IRPYLRQSGVASPYDILRSVVS---GYRLIERRPADEAF--IRRFLE 693

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                 E +  +S+   +                N   VR+MT+H AKGL+ P V +    
Sbjct: 694  IAHLAENDGRASISAFLEFWNDKGEGETVPQPENAGAVRVMTIHKAKGLQFPAVVVPYHH 753

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
               F   +     +     +   +    P                +     E   LLYV 
Sbjct: 754  ---FHTDNKNPALVTADFPEGRLLVPDQPGLGLD-------YARRRARELAEQLHLLYVA 803

Query: 655  MTRASDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
             TR   +L   +  H    ++           ++    +D          +  +    A 
Sbjct: 804  WTRPEIELHAFVPGHGPLRDKASYPLPRAMAGLFAGLGHDPADGDPIRIGAPPETPAAAP 863

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                  P    L         +   K+ + +   I+        +  S        +  +
Sbjct: 864  AACPTPPPEPALVEPGPPMDWLPRVKVFRNVARDIRQS------MRFSEKQRGELAHAAA 917

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                   F                 +                         L   +  +L
Sbjct: 918  EAFARAGF--------------DPADPAPAAARAVATALGPARLDPGLRAALAQELADML 963

Query: 833  ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
                   A+     + +     ++          R D  + S + I + ++KT       
Sbjct: 964  VWLAGLDALRPAFVAGLPERELLDADGSRH----RPDLFAASPEAILVADFKTGRPATD- 1018

Query: 893  IEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFII 935
                   H AQ+S Y  +++      +      L+Y+   +   +
Sbjct: 1019 -------HEAQVSRYVGLIRRLPGLADAPAAGFLLYLDRRECRPV 1056


>gi|148642118|ref|YP_001272631.1| DNA helicase II [Methanobrevibacter smithii ATCC 35061]
 gi|148551135|gb|ABQ86263.1| DNA helicase II [Methanobrevibacter smithii ATCC 35061]
          Length = 1505

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 154/918 (16%), Positives = 270/918 (29%), Gaps = 198/918 (21%)

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            A           Y+E  +K  V+DF  + +   + L++           D    +ILIDE
Sbjct: 660  ALYLQVAKSYPIYKELMEKENVIDFGHMQLKALEYLRENP---------DSVFKNILIDE 710

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDT  IQ E+ + L ++                VGD  QSIY F G+      +     
Sbjct: 711  FQDTDPIQMEIFKILMKNCDSA----------TFVGDIDQSIYGFRGSYDNYFEQLSNEY 760

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                         I L  ++RST  I+ V + +     +                     
Sbjct: 761  ---------DVKRISLNTNYRSTNQIIDVSEALIKPQRDVHS------------------ 793

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                           ++       + S  D   +       A  I   I  +  T  I  
Sbjct: 794  ---------EKDLKGNRDIDFPIYYISNEDKDNE-------AENICEFIKYLKETGKID- 836

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      +I VL R              L N+  I         L D   IK ++ L
Sbjct: 837  -------NYNEIAVLTRSVTSNGNCIKPLMNLLNENNIPYAIKGNKDLLDKDEIKSILTL 889

Query: 425  GRFILSQEDDLSFVCMLKSPLFNF------------------SEDDIFKICTQRHETETV 466
              +++S++ D   +   +    N                   +++ +F I  Q       
Sbjct: 890  IYYVISEDKDHHIMNSWEKKWLNLKAFTDTDFKMKLCNLSDETKEILFNIQEQYENDVVA 949

Query: 467  YEYIQKFANC-GISKFQHV--------------------------------IKYIHEL-- 491
             E           S+ +                                  ++ + +   
Sbjct: 950  AEKDVSIEVTGKKSRVRSFGGVFKKYNKPEFENGQEILKDIVNKVSFPYLNVQNLEKWGI 1009

Query: 492  ---IHIAQFCSPHDFFTLILGAKKGRQ----------QFISRFGNEVID------VLDEF 532
                 +A F    +    IL      +          + +        D        DE 
Sbjct: 1010 KNKDDLAFFDKLFEIRENILSEDIEYKNKLTILEIYMRLLEINDYFNADFINNPNNQDEI 1069

Query: 533  LNFTL------RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             N           EQ  Y+                  + + + N V++MTVH AKGLE P
Sbjct: 1070 SNLAFISNTLYNYEQMYYNKAIRGAFWFLYTNIEDYGSSNVDPNGVQLMTVHKAKGLEFP 1129

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VV +     + F  K I        ++  P         K ++         + +  +  
Sbjct: 1130 VVIVASFSDKKFPSKFISPNPDNGYIHGKPAFFTPYEFLKYKDFENESEEVLIHEEEEN- 1188

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              R++YV MTRA D L++      S+++         +V     +    K   ++    +
Sbjct: 1189 --RIIYVAMTRAQDILVLSSLVPPSDKENEITYKGSSLV----EDLLINKNYAMSLQAKE 1242

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             E           E   LE        +    +   L  P +N +               
Sbjct: 1243 IEIPKTVCKKPDFEEELLE--------LSFTSLKSYLQCPFRNKL--------------- 1279

Query: 767  KTNLESLLSDNQTFNRGLIIHKLLQVI--------FTLPEHKRKNFITSYCTKNAKLWPA 818
              +    +SD      G +IHK L+VI          L + + KN + +    N  +   
Sbjct: 1280 LNHFHFKISDKTQITYGKVIHKALEVINKRIKATGEYLGDDEVKNIVENLFYTNPNIAYD 1339

Query: 819  KEYKNLLLSITRLLEN-PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN 877
            ++ K     +  +++N               +    + N   KD  I+G ID I  +   
Sbjct: 1340 RKQKLKTDKLDDIVDNVIHYYHTFGNKIKV-IDSEVQFNVKNKDYGITGAIDLIYETDDG 1398

Query: 878  -IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIY-VSEPKVF 933
             I + +YK               H  QL +Y  +LK    + NK +  L +Y +   K+ 
Sbjct: 1399 KIGLLDYK----YTSSEAKYMKWHKKQLYVYVGVLKSLEEWKNKEISELKVYAIKSRKLV 1454

Query: 934  --IIPQNKLNKAFAEIST 949
               +  +K+N+   E+ T
Sbjct: 1455 GIPVDYDKINEIMQEMDT 1472


>gi|197122458|ref|YP_002134409.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
 gi|196172307|gb|ACG73280.1| UvrD/REP helicase [Anaeromyxobacter sp. K]
          Length = 726

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 100/648 (15%), Positives = 192/648 (29%), Gaps = 121/648 (18%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                  +        +   Y E K     +DF+DL++N   LL +R+    +R  +   
Sbjct: 176 ADRRPQFVPLTDDVLRVARRYAERKHALNAMDFDDLLLNWKILLAEREH---VRRALAGR 232

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             H+L+DE QDT+ +Q +V+  +  +           R L  VGD+ QSIYSF GA    
Sbjct: 233 YRHVLVDEYQDTNRLQGDVVDLIAAE----------HRNLCVVGDDAQSIYSFRGAHFAN 282

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L  ++                +L +++RST  IL++ +   +                 
Sbjct: 283 ILEFEKRYP--------DARRFDLTVNYRSTPQILSLANASIAANVRQFEK--------- 325

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                       +L             P ++                  A  +A  +  +
Sbjct: 326 ------------ELSSVRRDGTLPAVVPCRDV--------------QQQAAFVAQRVLEL 359

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                         I   +I VL R    +       +F      I  V        +  
Sbjct: 360 RDEG----------IPLPEIAVLYRAHHHS----MEIQFELARRGIPFVVRSGVRFFEAA 405

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDD----IFKICTQRHETETVYEYIQ 471
            +KD++A  RF  +  D+L+    LK +P    +  D     F +   R           
Sbjct: 406 HVKDVLAHLRFARNPGDELALKRCLKITPGVGTATADAVWSAFSLRRSRGRGTLDELLAP 465

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISR--FGNEV 525
             A+   +K +     + +L+           P +    +L      +   +     ++ 
Sbjct: 466 DVASHVPAKGRAGYTRLAQLLRALGRPPTSDLPGEAIEKVLDG-GYEEYLRAEFLNADQR 524

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           ++ + +   +    E          I+ L +              ++ + +VH AKGLE 
Sbjct: 525 VEDVQQLAQYARGYEDTEA--FLSEIALLTEISAETVSEGGEPDEKMILSSVHQAKGLEW 582

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+V      F                                             +E
Sbjct: 583 RAVFVVWLADGRFPS----------------------------------AQALKDTDGEE 608

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YV  TRA D+L +      +   +                     ++     ++
Sbjct: 609 EERRLFYVASTRAKDELYLTYPVVAAPRDRER---VVMKASRFLEELPAEPELFERWQLD 665

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                A   +   P      R+ ++   +  +  P++  +     +  
Sbjct: 666 DPGLPAALGAAPPPATGLPPRDPSVVPALFGEPAPRRGPADAAAPVEA 713


>gi|194015021|ref|ZP_03053638.1| YjcD [Bacillus pumilus ATCC 7061]
 gi|194014047|gb|EDW23612.1| YjcD [Bacillus pumilus ATCC 7061]
          Length = 770

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 96/641 (14%), Positives = 192/641 (29%), Gaps = 120/641 (18%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L  F   ++   +K I+ + +++K+    + L+                   +     
Sbjct: 243 QHLIKFDWQKEQYIRKAIMNEGLDEKNYPTDQVLQSIGFWKNAFLPGELPDLKDEKEKHM 302

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            T    +   YE+ K+ N   DF+D+ I    +L ++     +  +  +   +IL+DE Q
Sbjct: 303 WT----IYQSYEQQKQDNQQFDFDDMAIACLHMLTEQPE---LLKRYQERFKYILVDEFQ 355

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q+++I+ L  +             LF VGD+ Q+IY+F G+ P  +L  KR    
Sbjct: 356 DINPVQYQLIQLLAGETEQ----------LFCVGDDDQAIYAFRGSNPAFILEFKRDYP- 404

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     I+ L  ++RS   I+   D +    ++    +  +               
Sbjct: 405 -------SAQIVHLHANYRSHHTIVASADAIIKKNQHRYEKTLKAVR------------- 444

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                +    +D   +       A  I   I   I         
Sbjct: 445 ---------------SETIPPTLFYPYDEEEE-------ATMIVADIQEKIKNG------ 476

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALG 425
                +  DI VL R       I        +   I                ++ L+A  
Sbjct: 477 ----AKPSDICVLFRTNTGGRAIYERL----HQSAIPYETESGVKAFYSRRIVRVLLAFL 528

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI---QKFANCGISKF 481
                 +D  +   +L  P+F   +  +  +      E  ++ + +            K 
Sbjct: 529 SLSQDADDVAAMKQLL--PVFFLKQQTLNTMKALTITEDCSMVDALGKLTDIQPFQQKKL 586

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN 539
           Q ++     L ++    +   F    +G     ++ ++      +  D + +      R 
Sbjct: 587 QSIVPLFRTLRNLKPSDAV-AFIEQKMGLGDYLKKRVNDTNVLEKGADDVRDVKTAAKRF 645

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E     +++  ++  E      K         V++MT+H AKGLE   V++         
Sbjct: 646 E-----TIEAFLAHAEHMKSAEKEKTDEPG--VQLMTIHRAKGLEFQTVYITCVVDGALP 698

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H                     +                             YV MTRA 
Sbjct: 699 HDFSLDELRNGEEEALEEERRLL-----------------------------YVAMTRAE 729

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
             L +   S    +     R  Y ++  +       ++  L
Sbjct: 730 QSLYLSVPSFRRGKTAHRSRFLYPLLKKNRELFAEKQQAPL 770


>gi|261365067|ref|ZP_05977950.1| exodeoxyribonuclease V, beta subunit [Neisseria mucosa ATCC 25996]
 gi|288566486|gb|EFC88046.1| exodeoxyribonuclease V, beta subunit [Neisseria mucosa ATCC 25996]
          Length = 1213

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 129/878 (14%), Positives = 262/878 (29%), Gaps = 164/878 (18%)

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            ++K++     F+DL+++  D L     +  +   + Q     LIDE QDT  +Q+E+ R 
Sbjct: 364  KSKRERG---FDDLLLDVYDALTDNPQADSLAQAVAQNWRIALIDEFQDTDPLQYEIFRK 420

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +           S  + LF VGD KQ+IYSF GA+    L+                   
Sbjct: 421  IF---------ISQHKPLFLVGDPKQAIYSFRGADIYAYLQAAAD----------AQHSY 461

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  ++RS A ++  +  +F      +    D        ++R       +L     +  
Sbjct: 462  TLATNYRSHAKLINGIGALFRC--KNRPFVLDGIDYTEVGAARSES----RLSPPRTAIQ 515

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDIL 377
                N +        + L ++      +   A  I++ +          K R + + DI 
Sbjct: 516  IRWLNGKD------NEVLNKDILRRRASEYCADEIAHTLNEAAEGRLKFKDRPVVSGDIA 569

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VLVR   +  ++    +       I  V   R  +        L AL  + L+     S 
Sbjct: 570  VLVRTFNEGVMVAKSLKA----RGIQSVLLSRESVFTTPEALALAALLDYWLNPGQIGSL 625

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
              +L   LF +    ++++     E         +  +                      
Sbjct: 626  RFVLSGTLFGYDAQALYQLNRNEAELLNWINTAAESVSIWRKS----------------- 668

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--- 554
               +                ++R     +    + L   L  E+    S   L   L   
Sbjct: 669  -GIYAALQYFSSLHGIETGLLARGDERGLTNFHQLLE-CLSEEEGQSLSPAALHQWLNDQ 726

Query: 555  ------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                       +      ++   V+I+T+H +KGL+ P+V+               ++  
Sbjct: 727  ISLAQDRSVGESGLLRLESDEALVKIVTMHASKGLQYPLVYCPFVWDAKDMKPADWQILH 786

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC--- 665
              +   +            ++ +  +   HL      E  RLLYV +TRA +QL++    
Sbjct: 787  TAAHTTELLA---------KSQLNDEDRIHLADEEMAERLRLLYVALTRAEEQLVLYAAH 837

Query: 666  --------------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
                            ++++                +    + +K   L    N  E   
Sbjct: 838  CGDTADSPFAYLLEGSADSNRADTRQAYDQERKANKALGELQMLKNNWLRFLKNPPEHTD 897

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK----------------NDINEPY 755
            + +S   P+    +       L     IP + F  I+                       
Sbjct: 898  FSFSEDAPQPAAAQNRHLSDDLYQAAVIPARGFQFIRHTSFTGLSRQVKTRDDEREELQP 957

Query: 756  ILNPSTIDTKGKTNLESLLS------------DNQTFNRGLIIHKLLQVIFT-LPEHKRK 802
             L+P+      + + E+ L               +  N G+ +H++L+          + 
Sbjct: 958  ALDPAETAADTERSSENTLPVSDDLPNTDIHHFPRGANAGVCLHEMLEKFDFAQSAESQS 1017

Query: 803  NFITSYCTKNA-KLWPAKEYKNLLLSITRL-LENPMMTTAMSCDSYSEVSVSG------- 853
            + I    T+    L      K +L +  +  L    ++         E+  +        
Sbjct: 1018 SLIAETLTRYGFDLLWTDAVKQMLETCRKTRLAAQSLSEIPPERRLPEMGFTLYTEDFKL 1077

Query: 854  -----------------------KINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHV 889
                                   +++       ++G ID +     ++  I +YK++H  
Sbjct: 1078 HDLRRWFARENSSLPPECIEAAERLDFQDVQGFLNGFIDMVCQDSDDLVCIIDYKSNHLG 1137

Query: 890  PQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
                 +             +  Q  IY   +   +  +
Sbjct: 1138 DNAEAYTQQAMNAAVADHHYYLQALIYAIAVARYFKLR 1175


>gi|169767922|ref|XP_001818432.1| ATP-dependent DNA helicase [Aspergillus oryzae RIB40]
 gi|83766287|dbj|BAE56430.1| unnamed protein product [Aspergillus oryzae]
          Length = 998

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 99/682 (14%), Positives = 194/682 (28%), Gaps = 164/682 (24%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE     + +LD++DL++    LL++              +  +L+DE QDT+ I
Sbjct: 173 QVYQAYESHLADSNLLDYDDLLLRCAQLLRQHPECV-------SNVQSVLVDEFQDTNHI 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q++++              S  R +  VGD  QSIY F  AE K + R +++        
Sbjct: 226 QYQLMNLFA----------SQNRRITVVGDPDQSIYGFRSAEIKNLTRMQQLY------- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               S++ L  ++RS+  IL+    V     +        T ++                
Sbjct: 269 -SDTSVVLLEDNYRSSGSILSSAQDVIEQDSSRPAKRLQPTHSVGTMPVLRKLP------ 321

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                        +A   A+ I   I   I           +++
Sbjct: 322 -----------------------------TAEAEAQWIVLEIKRCIA-------MTGKLL 345

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D  +L+R    +  I            +           D + IK L+   R I   
Sbjct: 346 KYSDFAILLRSAALSRQIESEM----GKQGMPYRMVGGLRFFDRVEIKLLLDYLRVISQP 401

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI-----------S 479
            +  + + ++  P     E+ I  + +   +  + ++++++  A               +
Sbjct: 402 GNTDALLRIINVPSRKIGEESIRSLMSGAEKANKPLWDFMKDVAQGRRSTEKTLSKPTSN 461

Query: 480 KFQHVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEF 532
              + +  I     +L+      +P      ++     R+   S +G         ++E 
Sbjct: 462 GLGNFVGLIESSREKLLECTDCSAPKKLLEFVIKKLSFREYLTSTYGTNEENKWANVEEL 521

Query: 533 LNFTLR-----NEQNSYSSL---------------QELISELEQYPP------TIKRAHS 566
           +           E     SL               + L   L                  
Sbjct: 522 MGQAEDTAAAGEENEHDDSLPEIQGLSQQQAHPGEEALSRFLANVALSTEVLQQEGEDGE 581

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +   V I T+H AKGLE PVVF+    + +  H                          
Sbjct: 582 QSQERVTISTIHAAKGLEWPVVFVPAVYNGIIPHS------------------------- 616

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ-------- 678
                        +    +E  RLLYV MTRA   L +      S   ++          
Sbjct: 617 -------------RAEDSDEERRLLYVAMTRAQALLYLSYPLEQSRSGETTSVSTFLPEK 663

Query: 679 --RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
              + + ++  + H         +            E     P     +     ++  D 
Sbjct: 664 IIESRFRLLGPNLHEQIVYAIADILRRPRPTLEAMLEGQVSLPSTLDDQWTVDGREAADA 723

Query: 737 QKIPKKLFSPIKNDINEPYILN 758
                   +    + +      
Sbjct: 724 VFRWDGSRAVDGEEPSAKRPRY 745


>gi|203287798|ref|YP_002222813.1| DNA helicase [Borrelia recurrentis A1]
 gi|201085018|gb|ACH94592.1| DNA helicase [Borrelia recurrentis A1]
          Length = 698

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 94/542 (17%), Positives = 169/542 (31%), Gaps = 125/542 (23%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K K+   DF DLI+ +  +L+       IR ++ +    I +DE QDT+  Q+
Sbjct: 169 IEFYEQEKSKSNAFDFADLILKSVLMLQN---CENIRMRVQKRFKAIFVDEYQDTNYSQF 225

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +R L                   VGDE QSIYSF GA  + +L  +R           
Sbjct: 226 LFLRELY----------YKDAYFMVVGDEDQSIYSFRGARVENILEFERTFDN------- 268

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             S   L  ++RS+  I+ V + + S  +N       +   I  +          +  E 
Sbjct: 269 -VSKYYLVQNYRSSLSIVNVANNIISKNQNRYDKVIATENKIGKKIKIFIFQNPTEEAEY 327

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
             +            +   F+    +   +     IA+ I                    
Sbjct: 328 FANFLIENKLETAVLYR--FNHQSLQFEKAFFKNNIAHKI-------------------- 365

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
                                                   +   IKD+++L R  ++++D
Sbjct: 366 ---------------------------------LGSIRFYEREEIKDVISLLRLFVNKKD 392

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKFQH 483
            +SF+ ++  P     +  I KI    ++T+   + +             A   +  F  
Sbjct: 393 KVSFLRIINKPARGLGKTTIDKIIATLNDTDVNLDLMLASRKVVKNLKGKARDSLDIFLS 452

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +   + E I    + +  +F   +         +     +E    +DE ++  +      
Sbjct: 453 LYDELKENIQKGIYVNLSEFIKDVTMGFGIWNYYQKFDKDEKSKNIDELISSGVEYSG-- 510

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S + L+  LE    +           V + ++H  KGLE   V +      +   +  
Sbjct: 511 --SFEGLVIFLENSSLSPLVHGDFAS-SVLLSSIHGVKGLEFDRVIISGLEKGLLPSE-- 565

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                           I+ L     EE  RL YV +TRA  +L 
Sbjct: 566 --------------------------------IEELTADRLEEERRLFYVAITRAKFELF 593

Query: 664 IC 665
           I 
Sbjct: 594 IT 595


>gi|323144233|ref|ZP_08078864.1| putative exodeoxyribonuclease V, beta subunit [Succinatimonas hippei
            YIT 12066]
 gi|322415985|gb|EFY06688.1| putative exodeoxyribonuclease V, beta subunit [Succinatimonas hippei
            YIT 12066]
          Length = 1304

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 137/983 (13%), Positives = 287/983 (29%), Gaps = 133/983 (13%)

Query: 41   TGNPTILKKAQTLQ-QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
               P +LK A++L  + +      +   L        ++       + +  +      + 
Sbjct: 294  KKAPALLKSAKSLLNKLADAYADPDCRKLFLEELANYQYDCFVKKTSHKSIENCKFFIDF 353

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
                     +I+++     +  + L    L    +A + +   K+ V+  +D++   +  
Sbjct: 354  ENAVIALHKEIKEQRTACSLLINELRLAILMLA-DAKFGKLCAKDRVMSNDDVLKRLDYA 412

Query: 160  LK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            L  K   S  +   +       +IDE QDT   Q+ + + +  D              + 
Sbjct: 413  LNCKGAQSERLASLLRHRYPVAMIDEFQDTDPTQFAIFKKIYLDKDFADKAF-----CYL 467

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            +GD KQSIY+F G++    L  + +  + +   G       L  ++RS  +++  V+ +F
Sbjct: 468  IGDPKQSIYAFRGSDINSYLIARNLIAELSKGMGL----YTLNTNYRSHPNLVDGVNVLF 523

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQ-VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            S   N + +S   T  I        +        +      +              D   
Sbjct: 524  SQEINDKNVSPFLTDDINFNPVNHNRSSSFFSFEDSFSEAKEPVEYAAFYVDRILSDEPI 583

Query: 338  QESSASI--LARRIAYTISNMIGTDTIFSNGKK----RVIQAKDILVLVRKRKDTPLITF 391
            +    +    A+  A  I   +    I+   +     R +   DI VLV+ +++   +  
Sbjct: 584  ENKEEAQTKYAKACALRIKECLEHGFIYKKTENCCTKRRVIPSDIAVLVKTKRENAYVQK 643

Query: 392  LTRFLKNDYKISVVGNDRFIL--TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                L      SV  +D+  +  TD     +  AL   + +  D  +   + +       
Sbjct: 644  ELSALGIG---SVYFSDQSSVLGTDEGISPEAGALIFLMEAMCDFSNSRKVRRLLGSELL 700

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                 + C++        E    F      +    +               HD     L 
Sbjct: 701  SLSGDEFCSRLLNENFEAEVRLLFTCRQKWQKDGFLSAFLTW----FKDPLHDGLKNTLS 756

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---- 565
             + G +   + F       L E +           + L+            +        
Sbjct: 757  LEDGERSLTNYF------HLAEIVQQAHNRISGLRAQLRWFKELCSTGQDALNGEDVLKR 810

Query: 566  -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              + +++V+I+T+H +KGLE P+VF+        +   ++      S  D     +    
Sbjct: 811  LDSEYDQVKILTIHKSKGLEFPLVFMPFLWLGAQAECAVESSIGGVSYYDKQDKRLCFDF 870

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
             +S  N      K      ++E  RLLYV +TRA     +    N   +K     +   M
Sbjct: 871  MRSEKNA-----KAHNDDAKQEDRRLLYVALTRACFANFLFIA-NLDLKKAKELTSLRSM 924

Query: 685  VYDSFHNDERVKKIKLTNSIN-------KDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
            + D    D  + KIK  +          +  +        + +        T   L  + 
Sbjct: 925  LSDDGSPDLFIDKIKCVDKQQLFCLTSRQKSFYDSVQKYVNTDIKNNHDNLTASVLPQDA 984

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDT-----------KGKTNLESLLSDNQTFNRGLII 786
                  FS     +   +   PS I+            +      +  +  +    G+ +
Sbjct: 985  VCRDFSFSSYSALVAGLHDKAPSVIEGNNEDDIPEIEEEFNQRQLNAFTFPRGTIPGVFL 1044

Query: 787  HKLLQ-----------VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
            H LL+            +        +        +N           L L +  ++  P
Sbjct: 1045 HSLLENCDFTLCSDNNYLKDYVSKFVRQSANQGTVRNWTYEEKSAVNALTLWLYDIVNAP 1104

Query: 836  MMTT---AMSCDSYS-------------------------------EVSVSGKI------ 855
            ++       S                                    E+   G +      
Sbjct: 1105 LLKHENNYFSLSRLKHGSFVSEMAYLLPSVDMDTQFLNDLCKESAQEIPDRGSLLNKLIS 1164

Query: 856  NCPKKDIIISGRI----DQISISQ----QNIFIFEYKTHHHVPQEIE-----------HI 896
                   I++G I    D +  +     +  ++ +YK+ H      +             
Sbjct: 1165 ELYLDKKIVTGFINGFLDLVMRTDFDGQEKYYVIDYKSTHLGNYYRDYAQKKVILSVFDE 1224

Query: 897  PYTHIAQLSIYEKILKDSYPNKS 919
               +  Q  +Y   L      + 
Sbjct: 1225 RNRYDVQYLLYTLALHRMLKTRK 1247


>gi|110639638|ref|YP_679848.1| DNA-dependent ATPase I and helicase II [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282319|gb|ABG60505.1| DNA-dependent ATPase I and helicase II [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1041

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 127/851 (14%), Positives = 247/851 (29%), Gaps = 143/851 (16%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
             +  +    ++    K   +  A+   A      Y          D+ D+I+      K
Sbjct: 207 DLKASYYTEIEKMAKLKAAIAEFANFNAAMGAIRRY----------DYNDMILWVLKAFK 256

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           + ++   +     +   +IL+DE QDTS  Q EV+  L   +            LF VGD
Sbjct: 257 ENEL---LLRNYQERYQYILVDEYQDTSGSQNEVVDLLASYW--------ERPNLFVVGD 305

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QSIY F GA  K ++                 ++I L  ++RST  +L     V    
Sbjct: 306 DDQSIYRFQGANIKNIIDFNSKY---------NPALIVLKENYRSTQAVLDASMAVIKNN 356

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                                       L   V             + +     + +  +
Sbjct: 357 NER-------------------------LVNSVQGLDKQLTAKGIIAASHVEPKIIEYYN 391

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  +   +  +              +   ++ V+ RK      I  +    K    
Sbjct: 392 ELHEEASVVEQLEKLHHEG----------VDLSEVAVIYRKHSKVADIIKVLEKRKIPLN 441

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQED--DLSFVCMLKSPLFNFSEDDIFKICTQ 459
           I     +   L     + D++A  +      D  +     ++    FN    DI  I  +
Sbjct: 442 IK-QSINVLHLPFVQNLIDILAYIQKENEYPDSGEEQLFRLMHFEYFNIDPTDIANISRK 500

Query: 460 RHETETVYEYIQKFANCGISKFQHVI-----------KYIHELIHIAQFCSPHDFFTLIL 508
              T        +       +   +              +          +    F  I 
Sbjct: 501 TRRTSESSAIRWRELMSKKEELAKLNLHSLPSILSLEANLTYWQKEFHNITLQVLFEKIT 560

Query: 509 GAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--- 564
                    ++       + VL  F +F       +   L  L   L      +      
Sbjct: 561 TRGGILSWIMNSSEKTWYMQVLTTFFDFLKEETARNP--LLSLKEFLSTIQKMLDNDVRL 618

Query: 565 ----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                      V  +T H++KGLE   VFL+   S+ +  +  +                
Sbjct: 619 NLQKIIHAEKGVNFVTAHSSKGLEYRYVFLIGCNSRQWEGQAERSFGF------------ 666

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                     I S + ++++   +E+  RL YV +TRA + L I   +   NEK+     
Sbjct: 667 ---------KIPSTITENVEHDKEEDERRLFYVALTRAKEYLYISYPAKDVNEKELVCS- 716

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                       E+        S++ D  + Y+         P+        L +  +  
Sbjct: 717 -----RFLVELTEQETTKTTFVSLSDDAIVQYKLDILQFTEPPVIPLIDAVYLTELLESY 771

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
           +   + +   ++ P       +       L    +   +   G  IH+ L+  F      
Sbjct: 772 QLSVTHLNKYLSCPIAFYFENM-------LMVPSARTASSGFGTAIHEALKDFFAAMLAD 824

Query: 801 RK----------NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
            +                       +   EYKN     + ++   +  T +     + V 
Sbjct: 825 EEKRFPTVQYLSEVFKLKLKNVHSHFTLIEYKNYETYGSTVVLPELYETYIGEWEKN-VL 883

Query: 851 VSGKIN-CPKKDIIISGRIDQISISQQNIFIFEYKTHH--------HVPQEIEHIPYTHI 901
           +  +I+    K + I G +D+I I   ++ + +YKT            P E E     + 
Sbjct: 884 LEHRIDNVEYKGVPIKGNVDKIEIHGSDVNVIDYKTGKYASSKSKLLPPTEKEPNGGDYW 943

Query: 902 AQLSIYEKILK 912
            Q+  Y+ +++
Sbjct: 944 RQIIFYKLLIE 954


>gi|291563998|emb|CBL42814.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium
           SS3/4]
          Length = 656

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 111/679 (16%), Positives = 207/679 (30%), Gaps = 125/679 (18%)

Query: 9   LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             +  + + K+ W L   + S  +   +     G    L+ A +         +      
Sbjct: 80  AGKKDDHLPKNGWSLHRPEKSQQSAAEARQRAQGAGNSLEAAGSRVSFGTFHSVFYHILK 139

Query: 69  LSSFFLTQ---KFTPQKNIITQEINK---KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            +  F          ++    + +++   +  D  E +    +E   ++      K + S
Sbjct: 140 WAYRFPAGNVISGEEKRQYFKKFLDESGMEVEDEAEFISSIINEISYVKGERLDLKYYYS 199

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                   K L   Y+E  ++   +DF+D+++  ++L  +      I     ++  +IL+
Sbjct: 200 QNCPEEWFKKLYDGYDEMLEQTGKIDFDDMLVMCHELFTE---RKDILAAWQKKFKYILV 256

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD +L+Q++V+R L                 F VGD+ QSIY F GA+P+ +L  ++
Sbjct: 257 DEFQDINLLQYQVVRMLAL----------PENNFFIVGDDDQSIYRFRGAKPEIMLGFEK 306

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                          + L  ++RST +I+    K+    +       +            
Sbjct: 307 DFP--------GTKRVLLGTNYRSTKEIVETSLKLIGHNKVRFEKKLEPFR--------- 349

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
           G    V         H+                             +A +I         
Sbjct: 350 GSGRPVDFRVFDNPGHEMDT--------------------------VAQSIRAYHDAG-- 381

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDL 421
                       +I VL R   ++ L+          Y I     D    L  H   KDL
Sbjct: 382 --------YAWNEIAVLFRTGANSGLMAERL----MGYNIPFQLRDVIPNLYSHWIAKDL 429

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            A             F  ++  P   FS D            ++ Y+      +      
Sbjct: 430 FAYMEIAAGSRKRSDFYRIMNRPNRYFSRDAFDTPTVSFDRLKSFYQDRDWMED------ 483

Query: 482 QHVIKYIHELIHIAQFCSPHDF--FTLILGAKKG---RQQFISRFGNEVIDVLDEFLNFT 536
             +     +L  +++            ++G         +F      E+ +  D+     
Sbjct: 484 -RICDLEADLRAMSRLKPVAAVNYIRKVIGYDDYLRSYAEFRRMKPEELFETADKLAESA 542

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              E    +  +  +   E+             + V + T+H+AKGLE PVVF+VD    
Sbjct: 543 AEFETFE-AWKEHAVRYEEELKKQNLEGTREAKDRVTLSTMHSAKGLEYPVVFVVDVNEG 601

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +  H                                         +  EE  RL YV +T
Sbjct: 602 IVPHHKAGLP-----------------------------------ADIEEERRLFYVALT 626

Query: 657 RASDQLIICKHSNTSNEKK 675
           RA D+L +       + K 
Sbjct: 627 RAKDRLHVAAVRERYHRKT 645


>gi|261392848|emb|CAX50429.1| exodeoxyribonuclease V beta chain [Neisseria meningitidis 8013]
          Length = 1204

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 136/938 (14%), Positives = 277/938 (29%), Gaps = 160/938 (17%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
               KK       +     +    R   +  +  +        L L  YLN    E KK  
Sbjct: 309  AGLKKGKTPDAAVFAELQKLADFRRDLDALEEAEEATMIRLQLDLIGYLNRSLAEMKKSR 368

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369  RERGFDDLLLDVHTALTDNPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425  -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++  +  +F + E    L     + +   ++R              S+   +   
Sbjct: 470  RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAE------------SRLSPKRPA 515

Query: 325  QQESWTSYFDSL--PQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVR 381
             Q  W    D+    ++      A   A  I+  +        N K   +Q+ DI VLVR
Sbjct: 516  VQVRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAECRLNFKGCPLQSGDIAVLVR 575

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +  +++   +      ++  V   R  +        L AL  F L      +   +L
Sbjct: 576  THNEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPHRAGTLRFVL 631

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +F +    +        E     E  +   +                  + QF   H
Sbjct: 632  TSGIFGYDAQQLHDFNQNESEILHWAESARTALDN--------WNQYGIFAAMQQFSQTH 683

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
               T +L    GR         E++   D         +  + ++L + + +        
Sbjct: 684  GIETRLLSRNNGRSLTNYLQLLELLAAEDA--------QNRNPAALHKWLRDQISLAGNN 735

Query: 562  KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736  GGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTEL 795

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                          +  D  K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796  LAKAQ---------LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677  NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                   +            +   D      +    +  +      ++       P    
Sbjct: 847  LAYLIEGLPQDSRETVRRAYACEKDGIAMLKRNWRRVADNAPSGTNFAFTEDAPPPAAYR 906

Query: 728  ETIKQLMDEQKIP---------------------------KKLFSPIKNDINEPYILNPS 760
                Q  +                                ++   P  +         PS
Sbjct: 907  SNAGQTAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETSVPAMPS 966

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNA-KLWPA 818
              +T   ++  S+    +    GL +H++L+          ++  IT    K   +    
Sbjct: 967  --ETPTASDGISIHDFPKGTQAGLCLHEILEDFKFGQAAAGQETLITDKLKKYGFEEIWL 1024

Query: 819  KEYKNLLLSITRL----------------------------LENPMMTTAMSCDS--YSE 848
                 +  +  +                                  +   ++ D     E
Sbjct: 1025 PAVAEMAEACQKTPLTGAYCLSDIPPECRCPEMGFTLHTEDFGLKRLRDWLTRDDIRLPE 1084

Query: 849  V--SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ---------EIEHI 896
            V  + +  ++    +  ++G ID +    +  I + +YK++H             +    
Sbjct: 1085 VFRAAAETLDFHTVNGFLNGFIDMVCQDPEGNICVIDYKSNHLGADASAYTRQAMDEAVA 1144

Query: 897  PYTHIAQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
             + +  Q  IY       +  +     ++    +++  
Sbjct: 1145 HHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRG 1182


>gi|226365846|ref|YP_002783629.1| ATP-dependent DNA helicase [Rhodococcus opacus B4]
 gi|226244336|dbj|BAH54684.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4]
          Length = 1108

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 140/1056 (13%), Positives = 281/1056 (26%), Gaps = 196/1056 (18%)

Query: 7    LSLNESYELIY--KDLWPLPYFQVSDINKYVSLSMETGNPTILK------------KAQT 52
            ++  E  E +               ++   +    E   P   +                
Sbjct: 82   IAGGEDPESVLVLTQSKRAAGRVREEVTAALIGHDEHHGPRATREPLVRTVHSYAFAVLR 141

Query: 53   LQQASQTQCIEERF-----SLLSSFFLTQKFTPQKNIITQEINKKSP------DLKEKLK 101
            LQ A+                +    L         +  + +    P      +L++ + 
Sbjct: 142  LQAAAHGNPPPRLITGAEQDAVLREMLQGDIADGGEMWPERLRPALPLGGFAVELRDLML 201

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV------------LDF 149
            +S +  +   D     +    T      A    A YE                    LD 
Sbjct: 202  RSSERGLGPEDLIELGRRHDRTE--WVAAGMFAARYEHGMLLRGAVGVEAPEATAPALDA 259

Query: 150  EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
             +LI               +       + H+L+D+ Q       E++R +          
Sbjct: 260  AELIGAALTAFATDPD---LLRAERDRVRHLLVDDAQHLDPQAAELVRLV---------- 306

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +  RT    GD  QSIY F GA+P  +                    + LP++FRS+AD
Sbjct: 307  GTGTRTTVVAGDPDQSIYGFRGADPTFLAHLAD---------KGDPRQVLLPVNFRSSAD 357

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            + T   ++ S                 H   R                           W
Sbjct: 358  VATTAARITSRLPG-------------HLPHR--------------------------IW 378

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
            T   D     +     A + A  I++ +    +        +   ++ V+VR     P  
Sbjct: 379  TPAQDGGRTSARVLGTAAKEAALIADTLRRAHLLD-----GVPWSEMAVIVRS---VPRA 430

Query: 390  TFLTRFLKNDYKISV-VGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFN 447
                R       + V        L     +  LM + R +   +      + +L  P+  
Sbjct: 431  LAPLRRALLGAGVPVTTAASELPLARQHGVSGLMLVLRALSGQEFTGEDALALLAGPVGG 490

Query: 448  FSEDDIFKICTQR----------------------HETETVYEYIQKFANCGISKFQHVI 485
                 + ++                           ET +      K  +   +    V+
Sbjct: 491  AEPVALRRLRRGLRRAELASGGDRDSAELLRLLLVGETGSTRRVTAKLTDVEAASLNRVL 550

Query: 486  KYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLD---EFLNF 535
              + +    + +     D       A    +++ +        G +    LD      + 
Sbjct: 551  SVLRKARVPLERGRGIEDVLWAAWQATGLERRWSAASARGGPIGAQADRDLDAVVALFDA 610

Query: 536  TLRN-EQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 ++   + L   +  L  Q  PT +       + V +++ H A G E  VV +   
Sbjct: 611  AASYVDRLPRAQLAGFVDYLTGQAIPTARTVSVVPRDAVSVLSAHAAAGREWDVVAVAGV 670

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               ++     +   +           I +    S  +  +            E  RL  V
Sbjct: 671  QEGLWPSLRARGSLL------GTEALIDLTSGVSDGSETAADRMSRTAPLLAEERRLFLV 724

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK---------------- 697
              +RA   L++    + S +       + D +     + +  +                 
Sbjct: 725  ACSRARRSLLVTAVDSASGDADLVHSRFVDELLAGEQDSDAEEAALPAVDPATRVLALPA 784

Query: 698  --IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK-----ND 750
               +L + +   +    + +        L R                   P       N 
Sbjct: 785  LVAELRSVVCDPDVADSDPARQERAARQLARLAEAGVRGAHPDQWYGTAEPSTGVALWNA 844

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFN-------RGLIIHKLLQVIFTLPEHKRKN 803
             + P  L+PST+D      L  LL  +   +        G ++H L+Q +       +  
Sbjct: 845  EDGPVSLSPSTVDLLNTCPLRWLLERHGGRDGDNTHAIAGTLVHTLVQALAGRIPADQVE 904

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI- 862
                   ++  L      +  L     +L         +    +EV V   ++   +   
Sbjct: 905  RALENAWESIDLGSQWYSRRELDRTRDMLATFTAWLGNTRSELTEVGVEVAVDGVLEPRE 964

Query: 863  ------IISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY--EKILKD 913
                   + GRID++    +    I + KT      +         AQL+ Y     +  
Sbjct: 965  EGSPTIRLRGRIDRLERDAEGRPVIVDVKTARSPVTKDNAQQ---HAQLAAYQVAAAIGA 1021

Query: 914  SYPN---KSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
                   K     L++V++P        ++    +E
Sbjct: 1022 IDGEPASKPGGARLVFVAKPHQKEGATQRVQAPLSE 1057


>gi|325062285|gb|ADY65975.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3]
          Length = 688

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 123/741 (16%), Positives = 217/741 (29%), Gaps = 145/741 (19%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--------Q 54
            R    ++   E I K +       ++D   +       G   +   A+ +         
Sbjct: 70  RRAASEMSRRVERICKQVIGANAGALTDAMAWSGTFHGIGARLLRIYAEQIGLDVDFTIH 129

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQK----NIITQEINKKSPDLKEKLKKSQDEFIKI 110
               +  +         F  T+   P K     I ++ +N ++P LKE L++        
Sbjct: 130 DREDSADLMNLARHELGFSKTESRFPTKGTCLAIYSRAVNSQTP-LKEILRQHYPWVSSW 188

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +                    L A Y EAK+   VLD++DL++    ++   D++  I 
Sbjct: 189 EEELKQ----------------LFAAYVEAKQAQNVLDYDDLLLYWAQMVSDPDLAGDI- 231

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                  +H+++DE QDT+ +Q  V+ +L              R L  VGD+ QSIYSF 
Sbjct: 232 ---GNRFDHVMVDEYQDTNRLQAAVLMAL----------KPGGRGLTVVGDDAQSIYSFR 278

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            A  + +L                  II L  ++RST  IL   + V  +       +  
Sbjct: 279 AATVRNILDFPASFS-------PAADIITLDRNYRSTQPILAAANGVIDLARERFTKN-- 329

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW +  S    +    +              S +  A  I 
Sbjct: 330 -------------------LWTERQSLERPKLVTVK--------------SETEQANFII 356

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +     T           +  K   VL R    +  +            I  V     
Sbjct: 357 DQVLANRETG----------MTLKQQAVLFRTSSHSGPLEVEL----TRRNIPFVKFGGL 402

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEY 469
              D   +KD++A+ RF  +  D ++   +L+  P     +               +   
Sbjct: 403 KFLDSAHVKDMLAVLRFAQNPRDRVAGFRLLQMLPGIGPKKAGNILDTIAADPEPLLALA 462

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                      +   ++ +  L   +Q   P D     L  +   ++            L
Sbjct: 463 EIPPPPKTGDDWVSFVQLLANLRK-SQGGWPSDIEQARLWYEPHLERI-HEDAETRKADL 520

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLES 585
            +            Y S +  ++EL   PP      +     + + + + T+H+AKG E 
Sbjct: 521 LQLEQIA-----GGYPSRERFLTELTLDPPDATSDQAGVPLLDEDYLTLSTIHSAKGQEW 575

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+++                                                    E
Sbjct: 576 RSVFILNVVDGCIPSDLGVGST----------------------------------HEVE 601

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RLLYV MTRA D L +          ++ Q   +     +      + +   T +  
Sbjct: 602 EERRLLYVAMTRAKDSLSLITPQRFFTHGQNAQGDRHVYAARTRFIPATLLQFFETATWP 661

Query: 706 KDEWIAYEWSTHHPENTPLER 726
                A E S          R
Sbjct: 662 LVSAAASERSAQQIRIDVGAR 682


>gi|255726244|ref|XP_002548048.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240133972|gb|EER33527.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 935

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 96/642 (14%), Positives = 181/642 (28%), Gaps = 149/642 (23%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
               + ++     D    L     +   ++ +  + + +  +        +    YE A 
Sbjct: 156 SQFTSGKVLNSYKDFD--LDSISKQISSLKSKAISLEAYAKSPKRNKALVFFYQKYESAL 213

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            +N  LDF+D ++    L+K+  V  ++         H+L+DE QDT+ IQ +++    +
Sbjct: 214 TENQKLDFDDCLMKCFQLIKEYPVLNYV--------KHVLVDEFQDTNEIQLQLMYRFAQ 265

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                         +  VGD  QSIY+F  A+     + ++  +K         S I L 
Sbjct: 266 GHVS---NPEFQHNVTIVGDPDQSIYAFRHAQSANFKKMEKYYEK----MNLSVSQITLN 318

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RST+DIL   + V    ++    +  S   +  +          +            
Sbjct: 319 ENYRSTSDILQYSESVMRQQKDRHQKNLRSQNDVSFKPVYKVLDTPAE------------ 366

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                                   AR I Y I  ++             I+ +DI +L R
Sbjct: 367 -----------------------QARWIVYEIEQLLA-------LPNSPIKFEDIAILFR 396

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               T ++    R  K    I           +   +   M   +    + D  S +  +
Sbjct: 397 ASSQTKIVEDELRLRK----IPYRLIQGRSFWERKEVVSTMDYLKVCGDENDLFSVLRTI 452

Query: 442 KSPLF--------------------NFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
             P                        S  D  ++     +   +    +      ++  
Sbjct: 453 NFPARSLGEKTAGPIIAFIEKNIKNGLSVHDCLRLVANGKDGSKLSTRTRNILKGYVNII 512

Query: 482 ---QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI--SRFGNEVIDVLDEFLNFT 536
              Q  +K +      +        F  I       ++F   ++   E    ++E     
Sbjct: 513 DTAQERMKIMETCSGESLRHEAARLFQDIYDGSTLDKEFRKNAKDYEERRMNVEELSKSF 572

Query: 537 LRN---EQNSYS------------------------SLQELISELEQYPPTIKRAHSANH 569
           +     E+                             L +  +  E              
Sbjct: 573 IEFVPREETLPPYNGEIDGEFTPDKRNFIMQYIESIGLFDSSAVTESGENKGIENEEQGE 632

Query: 570 NEV-------RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           N V        + T+H +KGLE PVVF+      +   +     +  PS           
Sbjct: 633 NSVVPEFKGISLSTIHGSKGLEWPVVFVPGLSDGILPARFAVNSNGDPS----------- 681

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                               +  E  R  YV  TRA   L I
Sbjct: 682 ----------------KSAESINEERRCFYVATTRAKTLLYI 707


>gi|257878157|ref|ZP_05657810.1| exonuclease RexA [Enterococcus faecium 1,230,933]
 gi|257812385|gb|EEV41143.1| exonuclease RexA [Enterococcus faecium 1,230,933]
          Length = 650

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 95/639 (14%), Positives = 193/639 (30%), Gaps = 97/639 (15%)

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
              +     I +  ND         I+ +++L + I +   D+    +L+SP+    E +
Sbjct: 11  ILEIFKTLDIPLEMNDAQNYFQATEIRTMISLLQLIDNPYQDIPLAAVLRSPIVGLIEPE 70

Query: 453 IFKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
           +  I          + V  Y     +   +K +H  K +     +A+  S  D    I  
Sbjct: 71  LASIRLANRAHTYYDAVLAYQASNEDELAAKLEHFGKQLEHWRELARRSSITDLLWDIYY 130

Query: 510 AKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA- 567
                +  +    G +    L   ++     EQ+S+  L + +  +E+     K      
Sbjct: 131 ETGYLEYVVGLPAGAQRQANLYALVDRAKAYEQSSFRGLYQFVRFIEKMQEKDKDLAEPV 190

Query: 568 ---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                N VR+MT+H +KGLE PVVFL+D   +        +      L           +
Sbjct: 191 ISIEDNAVRVMTIHASKGLEFPVVFLLDMTKEFNLQDLRNRYAFEEKLGAGIRYMDPETR 250

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----------- 673
                     +    +     E  R LYVG+TRA  +L I        +           
Sbjct: 251 VLYDTLPFQAIKLAKQNKLLSEEMRKLYVGLTRAEQKLFIVGSYKNKEQMIQTWSEAADH 310

Query: 674 ---------KKSNQRTWYDMVYDSFHNDERVKKIKLTN------------------SINK 706
                    +   + +  + +         ++K                       +   
Sbjct: 311 EELVFDPALRLKGRSSLMNWIGYGLIRHPEMQKYLEEEISTSLLQHSNAQFSISWMNQQS 370

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                   +     N   + +E    L D  +       P +         + S I    
Sbjct: 371 IIEQRQLLAEKELVNLDQQMKEDETLLADSLQKRLAYEYPYQASSQTTSYQSVSEIKRLF 430

Query: 767 KTNLESLLSDNQ---------------------------------TFNRGLIIHKLLQVI 793
           +   ++  S                                        G   H LLQ++
Sbjct: 431 EDPDDTQESRLTLESSQNKAASRQFRYTQEQLAEPKFLQKDRQVSAAAVGTATHALLQLL 490

Query: 794 F-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--CDSYSEVS 850
              +P  +  +       +   +      K  + SI    +  +    ++   +   E  
Sbjct: 491 PLEMPTTESIHQKLQELVRKRLVDEKVAKKVDVSSIIWFFQTELGQQLIANKENVKREQP 550

Query: 851 VSGKINCP---------KKDIIISGRIDQISISQQNIFIFEYKTHHH----VPQEIEHIP 897
            S  +            + +++I G +D     + ++ I+++KT        P EI+ I 
Sbjct: 551 FSMLLPADEVFQDYPNQEDELLIHGIVDGYLEEKDHLNIYDFKTDFILHPDDPAEIDAIV 610

Query: 898 YTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
             +  QL +Y++ + ++  NK +    LI +   ++  I
Sbjct: 611 QKYQGQLRLYQQAMSEAL-NKPVENVFLILLRVKQIINI 648


>gi|58265500|ref|XP_569906.1| ATP-dependent DNA helicase pcra [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57226138|gb|AAW42599.1| ATP-dependent DNA helicase pcra, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 982

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 79/529 (14%), Positives = 172/529 (32%), Gaps = 101/529 (19%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            R + L    ++ K     + I++   K  P     ++ +Q++               + 
Sbjct: 138 SRKAALDEASMSLKEGVVLSEISKAKAKGEPPEAMAIRAAQNK--------------NAF 183

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
             +L +   L   Y+ A  +   LDF+DL++    L K+         ++ + I HIL+D
Sbjct: 184 TNTLAVIADLYEEYQLALTEANSLDFDDLLLYALRLFKEAP-------RVVENIRHILVD 236

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q+E+++   +          + + +  VGD  QSIY +  AE + + +  + 
Sbjct: 237 EFQDTNTTQYELLKRFAK----------AHKGVSVVGDPDQSIYGWRSAEIENLNKMTKD 286

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         I L  ++RST  IL     + S        S  ++           
Sbjct: 287 FP--------GVEAIYLEENYRSTGSILDAAHAIVSQDRQRIQKSLFTSHP--------- 329

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
           +   V L                                 I A  I+  I  +I      
Sbjct: 330 KSAPVTLKVFSTP--------------------------VIEASFISTEIKRLIA----- 358

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                 +++  D  +L+R    + +I    +       I           + + IKDL+A
Sbjct: 359 --YSGGLLRYDDFAILLRYNALSRVIESSLQ----KDSIPNRIVGGHKFFERMEIKDLLA 412

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQK---------- 472
             +   +   + +FV ++  P  +  +  +   + T +    +  +  ++          
Sbjct: 413 YLQLADNPGFNPAFVRVVNVPKRSIGDKTLTDILSTAKSMKISPMQLCERVTDGEGIPAN 472

Query: 473 FANCGISKFQHVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVL 529
                     + +  I +L   A+   S  D   +++          +     +   + +
Sbjct: 473 IKPGVKKSLANFVGVIRKLRRAAEGGASVADLIKMVIEKVNYEDYLRTSQPDWDSRWENV 532

Query: 530 DEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
            E ++         +    L   +++LE     I  + +    + R+  
Sbjct: 533 KELVSSPPTFLLFLHHRVPLWPWLTDLENGNSQISYSVTVAEEQARLSG 581



 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 61/227 (26%), Gaps = 35/227 (15%)

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L   +        T      A+  +V IMTVH AKGLE PVVF+       F        
Sbjct: 694 LAYFLQTSMLSTDTESGQDDASTPKVTIMTVHAAKGLEWPVVFIPAVEQGTFPS------ 747

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                         +  +     E  RLLYV MTRA   L    
Sbjct: 748 -----------------------------YRCTEPHEIAEERRLLYVAMTRAQSFLFRMM 778

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
               +N++ +  +   D V     +    + +   +            +       P ER
Sbjct: 779 GGEENNKEATTDQPNVDTVVRKHMSAMLCRPMPDEDLTKDMIMKHVRAAPPLSTWDPPER 838

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
               +++    +      +             P+ +    +      
Sbjct: 839 SSWGEKINRFARRDVTKAARATEYWASDVDEPPAALPMAPQKKPPPP 885


>gi|5542369|pdb|1QHH|B Chain B, Structure Of Dna Helicase With Adpnp
          Length = 273

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 65/337 (19%), Positives = 117/337 (34%), Gaps = 69/337 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y++   +N  LDF+DLI+ T  L  +      + +    +  +I IDE QD
Sbjct: 4   KVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDR---VPDVLHYYQYKFQYIHIDEYQD 60

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ +++ L E F          + + AVGD  QSIY + GA+ + +L  +R     
Sbjct: 61  TNRAQYTLVKKLAERF----------QNICAVGDADQSIYRWRGADIQNILSFERDYPN- 109

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +I L  ++RST  IL   ++V     N +                      
Sbjct: 110 -------AKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIW----------------- 145

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                            +   +    +   +       A+ +A  I   +          
Sbjct: 146 -----------TENPEGKPILYYEAMNEADE-------AQFVAGRIREAVERGER----- 182

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + +D  VL R    + ++  +         I           D   IKD++A  R 
Sbjct: 183 ----RYRDFAVLYRTNAQSRVMEEML----LKANIPYQIVGGLKFYDRKEIKDILAYLRV 234

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
           I + +DDLS + ++  P        I K+     + E
Sbjct: 235 IANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHE 271


>gi|238917159|ref|YP_002930676.1| hypothetical protein EUBELI_01231 [Eubacterium eligens ATCC 27750]
 gi|238872519|gb|ACR72229.1| Hypothetical protein EUBELI_01231 [Eubacterium eligens ATCC 27750]
          Length = 621

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 105/601 (17%), Positives = 197/601 (32%), Gaps = 125/601 (20%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           +  D KE +     E  +++        ++S        + +   Y++   K  ++DF+D
Sbjct: 125 EYDDEKEAVASVLSEISRVKGEAVNIDEYESMSVPQQSFRIIYMAYDDMLVKKHLIDFDD 184

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +I    DLL +       R     +  +IL+DE QD +  Q++V+R L + +        
Sbjct: 185 MIGLCRDLLMQ---REDYRKAWQNKYKYILVDEFQDINKAQFDVVRILADGY-------- 233

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
             R LF VGD+ QSIY F G+ P+ +L   +               I++ +++RST +I+
Sbjct: 234 --RNLFVVGDDDQSIYGFRGSAPQIMLDFNKYY--------SDAVRIDMCINYRSTGNIV 283

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
                V    E             +  ++   Q  +V ++E      +            
Sbjct: 284 LASRAVAEENEQR---------YYKDITTYNSQGDSVFIYEFNSLNDEK----------- 323

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                            +   I  +I +           I A DI VL R      +   
Sbjct: 324 ---------------AFVTSEIRRLIDSG----------IAADDIAVLSRTNVIGNMYMS 358

Query: 392 LTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                     I          + +H   KD++   R  L   + + F+ ++  P+   + 
Sbjct: 359 RLESD----GIPCCDYSAVQDVYEHWISKDILTYIRIALGSRERMDFLRIINKPIRYITR 414

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             I +                K +     +    ++ +   I++ +  SP      I   
Sbjct: 415 SYITQPADINA---------LKRSCERNEQMSEQVEKLASDINMIRNMSPFAAVNYIRKG 465

Query: 511 KKGRQQFISRFGNEVID------VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
               +   +       D      VLDE  +   R    S   L  +   L+Q     +  
Sbjct: 466 IGYDEYIRNYIYEHKADKEELYNVLDELAHRASRYMSLS-QWLDGITEYLKQCDTQRRNN 524

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  V ++T+H +KGLE  +V ++D    +  +                        
Sbjct: 525 TVEG---VHMLTMHGSKGLEYKIVMVMDVCEGIIPYN----------------------- 558

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                       K +     EE  RL YV MTRA ++L +       N+  +  R   ++
Sbjct: 559 ------------KAVLDEQIEEERRLFYVAMTRAKEKLYLLSPKQRYNKDTTRSRFLEEI 606

Query: 685 V 685
           +
Sbjct: 607 L 607


>gi|159186244|ref|NP_356043.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
 gi|159141378|gb|AAK88828.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 688

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 120/741 (16%), Positives = 212/741 (28%), Gaps = 145/741 (19%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--------Q 54
            R    ++   E I K +       ++D   +       G   +   A+ +         
Sbjct: 70  RRAASEMSRRVERICKQVIGANSAIMTDALAWSGTFHGIGARLLRIYAEQIGLNIDFTIH 129

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQK----NIITQEINKKSPDLKEKLKKSQDEFIKI 110
               +  +         F  T+   P K     I ++ +N ++P LK+ L++        
Sbjct: 130 DREDSADLMNLVRHELGFSKTESRFPTKGTCLAIYSRAVNSQTP-LKDILRQHYPWVADW 188

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +                     L A Y EAK+   VLD++DL++    ++    ++  I 
Sbjct: 189 QSELK----------------ELFAAYVEAKQIQNVLDYDDLLLYWAQMVSDPILADDI- 231

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                  +H+++DE QDT+ +Q  V+ ++              R L  VGD+ QSIYSF 
Sbjct: 232 ---GNRFDHVMVDEYQDTNRLQASVLMAM----------KPGGRGLTVVGDDAQSIYSFR 278

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            A  + +L                  II L  ++RST  IL   + V  +       +  
Sbjct: 279 AATVRNILDFPACF-------NPAADIITLDRNYRSTQPILAAANGVIDLARERFTKN-- 329

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW +  S    +    ++               +  A  I 
Sbjct: 330 -------------------LWTERQSLERPKLVTVKD--------------ETEQANFII 356

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I     T T            K   VL R    +  +            I  V     
Sbjct: 357 DQILANRETGTTL----------KQQAVLFRTSSHSGPLEVEL----TRRNIPFVKFGGL 402

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEY 469
              D   +KD++A+ RF  +  D ++   +L+  P     +               +   
Sbjct: 403 KFLDSAHVKDMLAVLRFAQNPRDRVAGFRLLQMLPGIGPKKAGNILDTIAPDPEPLLALA 462

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                      +    + +  L               +       +  I    +     L
Sbjct: 463 EIPPPPKTGDDWTAFTQLLVGLRRGPNGWPGEIGLARLWYEPHLER--IHEDADTRKADL 520

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLES 585
            +            Y S +  ++EL   PP      +     + + + + T+H+AKG E 
Sbjct: 521 QQLEQIA-----GGYPSRERFLTELTLDPPDATSDQAGVPLLDEDYLSLSTIHSAKGQEW 575

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+++                                                    E
Sbjct: 576 RSVFILNVVDGCIPSDLGVGTS----------------------------------QELE 601

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RLLYV MTRA D L +          +S+Q   +     +      + +   T S  
Sbjct: 602 EERRLLYVAMTRAKDNLSLITPQRFFTGGQSSQGDRHVYAARTRFIPATLLQFFETMSWP 661

Query: 706 KDEWIAYEWSTHHPENTPLER 726
                A E S          R
Sbjct: 662 LVSIAASERSAQQIRIDVGAR 682


>gi|257126540|ref|YP_003164654.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b]
 gi|257050479|gb|ACV39663.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b]
          Length = 1049

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 147/891 (16%), Positives = 313/891 (35%), Gaps = 158/891 (17%)

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIK-IRDRFNTYKMFKSTLASLTLAKYLNAH 136
            F  +     +    K+ D +E L++S ++  + + +     K+         +A+ +   
Sbjct: 272  FEKKIWDGRKTTGAKNQDDREALEESSEDLKEKLSEYIFVSKVLPLDKKLKNIAQIIFNI 331

Query: 137  YEEAKKKNCVLDFEDLIINTNDL--------LKKRDVSAWIRYKIDQEINHILIDEVQDT 188
             ++ K  +    + D+++ T +         ++   V+      I  +I+ I+IDE QDT
Sbjct: 332  AQKIKISSKKFTYNDILVYTYEFIFNKELKFVENDKVTEEFLELIGGKIDTIMIDEFQDT 391

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S++QW++++ +           ++   +  VGDEKQSIY++ G E +   + + + +   
Sbjct: 392  SILQWKILKLML----------NTSENIICVGDEKQSIYNWRGGEKELFEKLETMIE--- 438

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   ++  L  S+RS   I+  V+K+F+                          G  
Sbjct: 439  ------GNVQTLDKSYRSYKQIIENVNKIFN--------------------------GYD 466

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
              W    S +      Q+  +  +     ++        +I   I +MI    I + GK 
Sbjct: 467  SNWNYTDSGYREDEEYQRGYFGYFIQDTKEKK------EKIYTKIVDMIKNGQIKNLGKS 520

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDY-------------------KISVVGNDR 409
                     V+ RK      I  +    K  Y                    I     D 
Sbjct: 521  --------AVICRKNAHLKEIAAVLNEAKIPYTLESKATILEYKPIVSMYQLIKFFAFDN 572

Query: 410  FILTDHLAIKDLMALG----RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
            F         DL+       +++L  ++++       S +  F E+ I        + + 
Sbjct: 573  FKYLLEFVRSDLIGGLNSHVKYLLENKNEIMKYIGENSKIKGF-EEFINIQKDDEIKGKL 631

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFG 522
            +              F+ +I+ I EL  ++   +     + F+  L       +F S   
Sbjct: 632  LGYKKINTLERNGLIFEGIIEKIKELRALSINLNDKYQKENFSRKLVESFEITKFYSTNS 691

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
            +  +  +  F N   +      ++L E ++ +E+    +K+  S + N + +MT+H +KG
Sbjct: 692  D--LKNIFIFFNILKKY-----NNLYEFVTFIEEEKENVKQVSSKDVNAINLMTIHASKG 744

Query: 583  LESPVVFL--VDTGSQVFSHKHIKKMHIMPSLNDDPG---IPIWIPQSKSRNNIVSDLIK 637
            LE   VF     T        + K         +D     I       +   N +S++  
Sbjct: 745  LEFDTVFYYKRKTNKGNPDKDNFKSYLDFDEKFNDMKKFVILFTDYNKRMIRNELSEMRD 804

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
               +    E     YV +TRA   LI+   +  + +K+        ++      +E  K 
Sbjct: 805  KNSQKEMMEEINNDYVALTRAKKNLILLFDAEITKDKQYADSLVKRVIDVYKDENEYKKG 864

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
              + + I ++                            + K+   LF    +D       
Sbjct: 865  KIVESKIPEETTD-----------------------TSDVKVSDNLFKTYFDDDKFVVKK 901

Query: 758  NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
            + +T++ + K              +GL +H   + I    E+ R    ++  ++   +  
Sbjct: 902  SSNTLENEFK------------RKKGLAMHYYFEHILNDLENDRIVAKSALYSRYGNMLG 949

Query: 818  AKEYKNLLLSITRLLENPMMTTAMSC-DSYSEVSVSGKINCPKKDIIISGRIDQISISQ- 875
             K  ++L+  + + + +  +    S    Y+E  +   +N   +       ID+I+I + 
Sbjct: 950  KKIVEDLIERLDKFI-SKNLEMYSSKYKVYTEFEI---LNADGEKR----IIDRINIDEK 1001

Query: 876  -QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
             + I+I++YKT              +  Q++ Y  IL++      +V  L+
Sbjct: 1002 NKKIYIYDYKTGFEPETN-----EKYQEQINEYRGILENKICGYEIVAKLL 1047


>gi|21226292|ref|NP_632214.1| DNA helicase II [Methanosarcina mazei Go1]
 gi|20904537|gb|AAM29886.1| DNA helicase II [Methanosarcina mazei Go1]
          Length = 908

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 117/839 (13%), Positives = 226/839 (26%), Gaps = 183/839 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YEE    +  L F  +I      L        +   +     ++++DE QD +  Q 
Sbjct: 184 FKKYEEILDSHKRLTFNRMINLA---LTNLQEKQNVLSDV----KYLIVDEYQDINRAQE 236

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           ++I+ +                +F VGD +Q+IY + G++       ++  +        
Sbjct: 237 KLIQLI-----------GLNSEIFIVGDPRQTIYQWRGSD-------EKCFE-DFAVKHI 277

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I +  + RS   I+ V ++                        R  +         
Sbjct: 278 DAETISINENRRSGRQIIEVSNQF---------SDYFEDEYDHLDPVRKEEGAV------ 322

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 + + S     A+ IA  I   +                
Sbjct: 323 ---------------------YIAKLSDNIHEAKWIADQIEKHVDAG---------KCSY 352

Query: 374 KDILVLVRK-RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            DI +L+R      P    + R       I  +   +  L     I+ +  L  ++  + 
Sbjct: 353 GDIGILLRSVNTSAPPFIDIFRE----RNIPFIVGGKVGLFRRPEIQTMGKLFAWLYDK- 407

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCGISKFQHVIKYIHE 490
                          F  +  +    +    E +Y                  VIK +  
Sbjct: 408 --------------GFWYESQWDRENKEEGEELLYSALESWNDGVPSCKLHSEVIKKLEN 453

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRNEQNS-- 543
                     ++ FT +         +++    +     ++  L  F +     E  +  
Sbjct: 454 WKKNTLDSK-YESFTEVYHELLVLLNYLNLDSEDPNHAVIMANLGRFSSLLTDFESANML 512

Query: 544 -------YSSLQELISELEQYP----PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                     L+ L   +  Y                + V++MTVH AKGLE P+VF+  
Sbjct: 513 GGRQRNWERDLKNLCWYMNSYASGSYEEQPGDDIRGVDAVQLMTVHQAKGLEWPLVFVPA 572

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
             ++ F                       IP++               +   E   +L Y
Sbjct: 573 MNARRFPSSMA-----------GREQTWMIPRNMFDAEKY--------EGDIESEKKLFY 613

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V +TRA D L++      +           + + DS       K     + +   +    
Sbjct: 614 VALTRAKDVLVVSHFGTLNGRNSGESTFISEGLRDSKTTKLSAKDELPLHDLTSSKISDE 673

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
             +    E     +     +L                                       
Sbjct: 674 ILTYTPSEIILYRKCPYFYRLNQIWGYEPGFKER-------------------------- 707

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTL-------PEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
                     G  +H  LQ    L       P       +              + + + 
Sbjct: 708 -------IGYGNTLHFCLQQAADLIKNEGYSPISAISTAVDE--NFYMPFVNKIQGEKIK 758

Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
            +  R L +         D ++   V  +I  P +   I+G+ID I      + + +YKT
Sbjct: 759 EAAKRKLIS--FVKKHETDMHNIQEVEARIEFPLQKATITGKIDVIIHDGDQLEVRDYKT 816

Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV--FIIPQNKLNK 942
              V  E E        Q+ +Y   +K           + Y+S+ KV    +  ++L +
Sbjct: 817 SDSVITEAES-----AMQIQMYSIGMK-ILGENVTKGSVAYLSDAKVAYVEVDDSRLEE 869


>gi|220917224|ref|YP_002492528.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955078|gb|ACL65462.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 726

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 100/652 (15%), Positives = 193/652 (29%), Gaps = 121/652 (18%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                      +        +   Y E K     +DF+DL++N   LL +R+    +R  
Sbjct: 172 ADVLADRRPQFVPLTDDVLRVARRYAERKHALNAMDFDDLLLNWKILLAEREH---VRRA 228

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +     H+L+DE QDT+ +Q +V+  +  +           R L  VGD+ QSIYSF GA
Sbjct: 229 LAGRYRHVLVDEYQDTNRLQGDVVDLIAAE----------HRNLCVVGDDAQSIYSFRGA 278

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +L  ++                +L +++RST  IL++ +   +             
Sbjct: 279 HFANILEFEKRYP--------DARRFDLTVNYRSTPQILSLANASIAANVRQFKK----- 325

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                           +L             P ++                  A  +A  
Sbjct: 326 ----------------ELSSVRRDGTLPAVVPCRDV--------------QQQAAFVAQR 355

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +  +              I   +I VL R    +       +F      I  V       
Sbjct: 356 VLELRDEG----------IPLPEIAVLYRAHHHS----MEIQFELARRGIPFVVRSGVRF 401

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDD----IFKICTQRHETETVY 467
            +   +KD++A  RF  +  D+L+    LK +P    +  D     F +   R       
Sbjct: 402 FEAAHVKDVLAHLRFARNPGDELALKRCLKITPGVGTATADAVWSAFSLRRSRGRGTLDE 461

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISR--F 521
                 A+   +K +     + +L+           P +    +L      +   +    
Sbjct: 462 LLAPDVASHVPAKGRAGYTRLAQLLRALGRPPTSDLPGEAIEKVLDG-GYEEYLRAEFLN 520

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            ++ ++ + +   +    E          I+ L +              ++ + +VH AK
Sbjct: 521 ADQRVEDVQQLAQYARGYEDTEA--FLSEIALLTEISAETVSEGGEPDEKMILSSVHQAK 578

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VF+V      F                                           
Sbjct: 579 GLEWRAVFVVWLADGRFPS----------------------------------AQALKDT 604

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
             +EE  RL YV  TRA D+L +      +   +                     ++   
Sbjct: 605 DGEEEERRLFYVASTRAKDELYLTYPVVAAPRDRER---VVMKASRFLEELPAEPELFER 661

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             ++     A   +   P      R+ ++   +  +  P++  + +   +  
Sbjct: 662 WQLDDPGLPAALGAAPPPAAGLPPRDPSVVPALFGEPAPRRGPADVVAPVEA 713


>gi|323957440|gb|EGB53162.1| exodeoxyribonuclease V [Escherichia coli H263]
          Length = 862

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 101/663 (15%), Positives = 221/663 (33%), Gaps = 70/663 (10%)

Query: 10  NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
           +E+    +  +              V         + + + +     S      E+ S  
Sbjct: 218 DETLASRHAQIVARIDAVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIEKISAW 275

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
           +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 276 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 334

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 335 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 393

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 394 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 445

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                     L  ++RS   ++  V+K+FS  ++A    E     ++             
Sbjct: 446 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQA------ 489

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFS 364
               +      +  P  + W    +S       S +A+  A  I + +         + +
Sbjct: 490 ----LRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQICDWLQAGQRGEALLMN 545

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
               R ++A DI VLVR R++   +      L+     SV  ++R  + + L  ++++ L
Sbjct: 546 GDDARPVRASDISVLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWL 602

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
            + +++ E + +    L + +   +  DI  +           E+           ++ +
Sbjct: 603 LQAVMTPERENTLRSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQI 654

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQ 541
            +    +  +    S  +    +L    G ++            + E L      L +E 
Sbjct: 655 WRKRGVMPMLRALMSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEH 708

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +
Sbjct: 709 ALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQ 768

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                 ++    N   + +   +     E  RLLYV +TR+   
Sbjct: 769 AFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWH 815

Query: 662 LII 664
             +
Sbjct: 816 CSL 818


>gi|296329387|ref|ZP_06871887.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|296153507|gb|EFG94325.1| DNA helicase II [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 919

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 133/877 (15%), Positives = 272/877 (31%), Gaps = 176/877 (20%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            +++   + +     +  +++   +   K     YE+   +N ++DF  L +   ++L  
Sbjct: 160 LRNKINDLNENAIDIESVQTSDIYINFIKSAYKLYEKQLFENNIVDFSYLQVEFLNMLLN 219

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               A    KI+   ++I++DE QD++ IQ +++  ++++           + +  VGDE
Sbjct: 220 N---ADFLEKINNNFDYIMVDEYQDSNKIQEKILLFISKN----------KKNICVVGDE 266

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY F GA  + +L   +           +   I L  ++RS  DI+      F+   
Sbjct: 267 DQSIYRFRGASAENILNFSKHFNND------ECKCIVLEENYRSVNDIVE-----FNNNW 315

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                   +       S R+  +    ++    +  D                       
Sbjct: 316 INAINWYGNRFEKNIVSMRLDNILNKSVFHISGTTSDENI-------------------- 355

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
               R     I  +  ++ I             I VL            L   LK +  I
Sbjct: 356 ----RNTVTFIKKLKQSNKIT--------NYNQIAVLF-SHFKDRSAKKLEDALKKE-NI 401

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            V      +  +   +K        IL+          L   L      D+ +I  ++  
Sbjct: 402 EVYSPRTKVFFEMYEVKLTFG---VILACFKKYFPEEALDIYL--LECLDLARIEIRKDN 456

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
               +              +  I+ I E      F S ++ F  +L     +        
Sbjct: 457 EFLTW-------------IKDKIENISEY----SFNSLNEIFYELLNFSYYKNVLKEESP 499

Query: 523 NEVID--VLDEFLNFTLRNEQ---------NSYSSLQE--LISELE----QYPPTIKRAH 565
            E      L          ++             S+ +      LE         I    
Sbjct: 500 IEARANHNLAILSKIFRNFQKYVHSKKISVEDDFSIIKYFFTKYLEILKQSRVDEIFSEE 559

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              ++ +  +T+H +KGLE PVV +    S+      + +   +  L +           
Sbjct: 560 DYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNVSGDLSRQTSIDRLINSN--------- 610

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                               ++ R  YV  +RA + L++  +    +E   N + ++  V
Sbjct: 611 ---------SKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSE---NFKPFFYSV 658

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                    + +I L     KDE     ++T                      I    + 
Sbjct: 659 RGVNSLQFDINQINLDEVSKKDERRILSYTT---------------------DIALYRYC 697

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT--------LP 797
           P+K  +      +                 D + FN G+I HK ++ I            
Sbjct: 698 PMKYFLVREKEYS---------------TFDKKVFNLGIITHKAIEHINKSFLQKQEIFS 742

Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
           ++  ++ + +              + ++  + + +++             E S   +   
Sbjct: 743 DNYIEDLVKNIYKFQNIDLD-NNVERIINIVKKYIKDE--KDNFKYIKKVEAS---EFRV 796

Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              + I+ G+ID I   +  I I ++KT  +           +  QLS+Y+ +L+  Y +
Sbjct: 797 ED-NYILYGQIDLILEDENEIKIIDFKTGKY---NEIEFFSNYRQQLSLYKLLLQKKY-D 851

Query: 918 KSLVCLLIYVSE---PKVFIIPQNKLNKAFAEISTKI 951
           K +   L Y+ E    K  +I    L +    I+  +
Sbjct: 852 KKIKTYLYYLEEDEPKKEILIDDEDLKEDLENINKTV 888


>gi|203284261|ref|YP_002222001.1| DNA helicase [Borrelia duttonii Ly]
 gi|201083704|gb|ACH93295.1| DNA helicase [Borrelia duttonii Ly]
          Length = 698

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 94/542 (17%), Positives = 168/542 (30%), Gaps = 125/542 (23%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K K+   DF DLI+ +  +L+       IR ++ +    I +DE QDT+  Q+
Sbjct: 169 IEFYEQEKSKSNAFDFADLILKSVLMLQN---CENIRMRVQKRFKAIFVDEYQDTNYSQF 225

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
             +R L                   VGDE QSIYSF GA  + +L  +R           
Sbjct: 226 LFLRELY----------YKDAYFMVVGDEDQSIYSFRGARVENILEFERTFDN------- 268

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             S   L  ++RS+  I+ V + + S  +N       +   I  +          +  E 
Sbjct: 269 -VSKYYLVQNYRSSLSIVNVANNIISKNQNRYDKVIATENKIGKKIKIFIFQNPTEEAEY 327

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
             +            +   F+    +   +     IA+ I                    
Sbjct: 328 FANFLIENKLETAVLYR--FNHQSLQFEKAFFKNNIAHKI-------------------- 365

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
                                                   +   IKD+++L R  ++++D
Sbjct: 366 ---------------------------------LGSIRFYEREEIKDVISLLRLFVNKKD 392

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK----------FANCGISKFQH 483
            +SF+ ++  P     +  I KI    ++T+   + +             A   +  F  
Sbjct: 393 KVSFLRIINKPARGLGKTTIDKIIATLNDTDVNLDLMLASRKVVKNLKGKARDSLDIFLS 452

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +   + E I    + +  +F   +         +     +E    +DE ++  +      
Sbjct: 453 LYDELKENIQKGIYVNLSEFIKDVTMGFGIWNYYQKFDKDEKSKNIDELISSGVEYSG-- 510

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S + L+  LE    +           V + ++H  KGLE   V +      +      
Sbjct: 511 --SFEGLVIFLENSSLSPLVHGDFAS-SVLLSSIHGVKGLEFDRVIISGLEKGLLP---- 563

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                           I+ L     EE  RL YV +TRA  +L 
Sbjct: 564 ------------------------------AEIEELTADRLEEERRLFYVAITRAKFELF 593

Query: 664 IC 665
           I 
Sbjct: 594 IT 595


>gi|295116233|emb|CBL37080.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium
           SM4/1]
          Length = 618

 Score =  210 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 112/673 (16%), Positives = 209/673 (31%), Gaps = 130/673 (19%)

Query: 22  PLPYFQVSDINKYVSLSMETG---NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
                      + +      G     T       + + +      +           ++ 
Sbjct: 58  AAAREMKERFERLMEGRCLRGQVSFGTFHAVFFRILKLAYGYEAADIIREDQRLRFMREL 117

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
             ++ +  ++ N+    L  ++   + E I +   +      ++        K + A YE
Sbjct: 118 VAKEQLEPEDENELIASLLSEISSVKGELIDLDHYYAKSCSGEA-------FKRIYAGYE 170

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           E  ++N  +DF+D+++   +L ++      I     ++  +IL+DE QD + +Q+E++R 
Sbjct: 171 ERLRRNRKIDFDDMLVMCYELFRQ---RPDILGAWQKKYAYILVDEFQDINRLQYEIVRM 227

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L                LF VGD+ QSIY F GA P+ +L  +R               +
Sbjct: 228 LAA----------PRNNLFIVGDDDQSIYRFRGARPEIMLGFERDYP--------DAGRV 269

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L +++RST +I+    ++    E     S              G  G   +      + 
Sbjct: 270 LLDVNYRSTKEIVDASLRLIGNNEKRFKKSL----------RTAGSRGRKVITRVWKDEE 319

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
           +                            RIA  I                    +DI V
Sbjct: 320 EENS-------------------------RIAEEIRMYSEAG----------CAYRDIAV 344

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSF 437
           L R                 +Y +     D    L +H   K+++A  R  L   +    
Sbjct: 345 LYRTNSGPRR----LIEKLMEYNLPFKARDVVPNLYEHWISKNILAYIRVALGSRERGEV 400

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
           + M+  P    S D +        E +  Y                 I+ +   +     
Sbjct: 401 LQMINRPARYISRDALQAPQISFDEVKGYY--------RDKDWMVERIESLEFDLTAISR 452

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--SYSSLQELISELE 555
            SP      I  +               +   DEFL    + +++   Y +     S + 
Sbjct: 453 MSPLAAVNYIRKSVGYDAWLYEYAAAHRMKA-DEFLETADQLKESAARYKTFDAWFSHIS 511

Query: 556 QYPPTIKRAHSANH---NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           +Y   +KR         + V + T+H++KGLE  VV+++D    V  H            
Sbjct: 512 EYGEELKRQAREREQTADAVTLSTMHSSKGLEYRVVYILDANEGVTPHS----------- 560

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                   K +  +  EE  RL YV MTRA  +L +       +
Sbjct: 561 ------------------------KAVLDADIEEERRLFYVAMTRAKQRLHVYSVKERYH 596

Query: 673 EKKSNQRTWYDMV 685
           +     R   + +
Sbjct: 597 KPAEVSRFVEEYL 609


>gi|239905341|ref|YP_002952080.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
 gi|239795205|dbj|BAH74194.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1]
          Length = 739

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 111/757 (14%), Positives = 211/757 (27%), Gaps = 134/757 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP--TILKKA-QTLQQASQTQCI 62
           G+       L +           + +   +     +G    T    A   L++ S+    
Sbjct: 47  GVEPASILLLTFTRKAAQEMLTRAGLLLALGAQGISGVAGGTFHAFAFAALRRYSEAAGF 106

Query: 63  EERFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKS-QDEFIKIRDRFNTYKMF 120
              F+ L +          +  +   + ++  P     L    +    ++       +  
Sbjct: 107 PGGFTCLDAADCEDILGQCKDRLGLGKGDRSFPRKSAILGLLSKARNKELEVGDVIAREA 166

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              L        L   Y   K ++ +LD++DL+     LL        +   I    +H+
Sbjct: 167 FHLLPYAEAITSLGQAYGAFKAEHNLLDYDDLLFTLERLLADPAGPGAL---IRARHSHV 223

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++DE QDT+ +Q  + R L  +             + AVGD+ QSIY+F GA    +L  
Sbjct: 224 MVDEYQDTNKVQARLTRLLAPE----------GGNVMAVGDDAQSIYAFRGASVDNILDF 273

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             +             +I+L  ++RST  IL + + V +           +T        
Sbjct: 274 PSLFP--------GTKLIKLERNYRSTQPILNLTNAVLAGAGRKFEKHLFTT-------- 317

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
           R        +                              S    A  +A  +  +  T 
Sbjct: 318 REDGPQPQCMRPF---------------------------SDLTQASMVAAKVKELSAT- 349

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                         +I VL R    +  +            I          ++   IKD
Sbjct: 350 ----------FPLHEIAVLFRAGYQSYALEVEL----GKAGIPFQKYGGQKFSEAAHIKD 395

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           ++A  R   +  D  ++  +L             +I       +     +         +
Sbjct: 396 VLAYLRLARNTADFPAWSRVLAFVP-GIGPKTATRIFEAIRAGDR---AMLGKMAAKSGE 451

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEFLNFTLRN 539
           F+ +I+++  L  +    SP +  + ++ A      +            LD+        
Sbjct: 452 FKALIEFLDALRALPP--SPQELLSKVIEAYAPLLTERYPDDYPRRQAGLDQLEQIAAAY 509

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                + L   +++L    P   R  +   + V + TVH++KGLE   V ++D   + F 
Sbjct: 510 -----ADLDAFLADLVLENPDEDRKKAREGHLV-LSTVHSSKGLEWSAVLIIDLVDERFP 563

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +H                                     +    EE  RLLYV  TRA 
Sbjct: 564 SRHALS----------------------------------RAEDLEEERRLLYVACTRAR 589

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           D L +               T Y               ++        E       +   
Sbjct: 590 DYLGLFS-----------PETLYQRQGGGCAPAMPSIFLRELPQGLLAERRERLGGSGAA 638

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                             + P +  +        P  
Sbjct: 639 SFACPAPTAASSSAQSFTRQPMRRATSAPLSARLPAR 675


>gi|330976326|gb|EGH76383.1| DNA-dependent helicase II [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 488

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 86/493 (17%), Positives = 152/493 (30%), Gaps = 103/493 (20%)

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
               +L  VGD+ QSIY + GA+ + + +                 +I L  ++RSTA I
Sbjct: 1   QGGDSLMVVGDDDQSIYGWRGAKIENIHQYSSDFP--------DTEVIRLEQNYRSTASI 52

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           L   + +        G                      +LW           + +  +  
Sbjct: 53  LKAANGLIINNSGRLGK---------------------ELW-------TDVGDGELINLY 84

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           + F+   +       AR +  TI + + T           I   DI +L R    + ++ 
Sbjct: 85  AAFNEHDE-------ARYVVETIESALKTG----------ISRNDIAILYRSNAQSRVLE 127

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                     +I           +   IK+ MA  R +  + +D +   ++  P     E
Sbjct: 128 EAL----LRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGE 183

Query: 451 DDIFKIC-TQRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             +  I    RH   +++E ++             +     I+ I  L         H  
Sbjct: 184 KTVEAIREHARHADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLAAKVMEMPLHLM 243

Query: 504 FTLILGAKK---GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPP 559
              ++         +Q     G   ++ L+E ++     E +     L  L + L     
Sbjct: 244 TQTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARAFENHESEEDLTPLAAFLGHASL 303

Query: 560 TI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                    + + +++MT+H+AKGLE P VFLV     +F HK   +             
Sbjct: 304 EAGDTQAQEHEDSIQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPG---------- 353

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                     EE  RL YVG+TRA  QL++              
Sbjct: 354 ------------------------RLEEERRLAYVGITRAMKQLVMTYAETRRLYGSETY 389

Query: 679 RTWYDMVYDSFHN 691
                 V +    
Sbjct: 390 NKVSRFVREIPPA 402


>gi|115378634|ref|ZP_01465785.1| ATP-dependent exoDNAse beta subunit, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364346|gb|EAU63430.1| ATP-dependent exoDNAse beta subunit, putative [Stigmatella
           aurantiaca DW4/3-1]
          Length = 1134

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 119/789 (15%), Positives = 245/789 (31%), Gaps = 66/789 (8%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP-TILKKAQTLQQASQTQC 61
              GL    +     ++         ++     + + E           +  ++A +   
Sbjct: 147 REEGLRAETAAVSNIEEARAGLEALFAESLTLCASARELDAKGEWRLLREACERALEGMT 206

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE----FIKIRDRFNTY 117
            E  F+      L   F        +     +  ++    +   +     I++ D F  +
Sbjct: 207 PENLFTADRLPALKAAFMADGRNFARLSKGAASPIRALYWRIFGKSDGSVIRLEDAFAAW 266

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           +     +    L   +   +E    +  V DF  L++   DLL+        R ++ + +
Sbjct: 267 RTAPFEVTFRNLLGQVEVRHETEFTRRNVFDFTALLVKARDLLRDHPA---FRRQVQERM 323

Query: 178 NHILIDEVQDTSLIQWEVI-----------RSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +L+DE QDT+ +Q E++           R+L  D  +       P  L AVGD KQSI
Sbjct: 324 GALLVDEFQDTNRLQLELVLLLSEQREGGPRALRPDEDLRATLPLEPAFLCAVGDRKQSI 383

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F GA+                  G       L  + RS   +L   ++ F+       
Sbjct: 384 YEFRGADVSVFALLAEKMVAEGGAKG------FLQDNRRSVPALLDFFNRAFAGV----- 432

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                   +     R  +V  V   + +     +             ++     +    A
Sbjct: 433 -------LVASDPPRPYEVEYVPKEDDLSPVRPALSEEPAVERLLIGEAETAAEARERDA 485

Query: 347 RRIAYTISNMIGTDTIF-----SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             +A+ +  M+              + R  +  D+ +L+R          + R     + 
Sbjct: 486 NAVAHRLRLMLAPGAAPCVAHEDGQRLRPARGGDVAILLRTFTHL----EVYRQALIRHG 541

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           +               + DL +L   +   +D L+   +L+SPL   S+  +F++ +   
Sbjct: 542 VPHRVLRGRGFYGAQEVLDLASLLALLADPDDSLALAAVLRSPLVGLSDASLFRLSSG-D 600

Query: 462 ETETVYE------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           +  ++           + A     + +  +  +  L              + +     R+
Sbjct: 601 QGLSLAGVLQKDLAACELAPNERLRLERFLTALPSLRRERDRLGVKALLQVAMNITGYRE 660

Query: 516 QFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA------N 568
                 +  +    +D+ L    R ++           EL     +      A      +
Sbjct: 661 AMAGTPYAEQASANIDKLLALAGRRDERGTGGCVAFARELRMLVESEPTEAQADLLDAGD 720

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V+++T+H AKGLE PVV +   G +  S         +  L   P +P  +      
Sbjct: 721 PRAVQLLTIHRAKGLEWPVVVVPGLGGKRRSESARVHFERIHGLVLRPWLPDTLES--FS 778

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           +     +   L      EY RLLYV +TRA D L++      + EK+     W  +    
Sbjct: 779 SGRFEAVKDELDARGLAEYRRLLYVALTRARDVLLLSG----TAEKRVPLSWWTMIDGRL 834

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
             +     +++   +                      R E   Q +      ++  S + 
Sbjct: 835 GTDAALRARVRDVEAAALPPPADPLPPDAKALVEAEARVEAALQRVRGSTAVREPVSAVA 894

Query: 749 NDINEPYIL 757
           +       +
Sbjct: 895 SAEALQDFI 903


>gi|323692617|ref|ZP_08106849.1| UvrD/REP helicase [Clostridium symbiosum WAL-14673]
 gi|323503314|gb|EGB19144.1| UvrD/REP helicase [Clostridium symbiosum WAL-14673]
          Length = 611

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 103/563 (18%), Positives = 181/563 (32%), Gaps = 122/563 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + + + YEE  ++  ++DF+D+++    L  +      I     +   +ILIDE QD + 
Sbjct: 160 RRICSGYEEQMRRLGLIDFDDMMVMCRQLFLE---RQDILAAWQRRYRYILIDEFQDINR 216

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+E+IR + E              LF VGD+ QSIY F GA+P+ +L  +R        
Sbjct: 217 LQYEIIRMIAE----------PENNLFIVGDDDQSIYRFRGAKPEIMLGFERDYP----- 261

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L +++R T +I     ++    E                            
Sbjct: 262 ---GAGRILLDVNYRCTEEIAGPAMRLIENNEKRFSK----------------------- 295

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
             ++ +            W   F+             RIA  I                 
Sbjct: 296 --KIRTNGARGKQIITRIWQDSFEENN----------RIAEEIKAYQAAG---------- 333

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFIL 429
            +  DI VL R          L      +Y +     D    L +H   ++++   R  L
Sbjct: 334 YRYGDIAVLYRTNSGPR----LLMEKLMEYNLPFKARDSVPNLYEHWISRNILTYIRIAL 389

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              +   F+ ++  P    S D +       +E +  Y                 I+ + 
Sbjct: 390 GSRERADFLQIINRPKRYISRDSLRNPQVSFNELKEWY--------HDKDWVADRIENLE 441

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--SYSSL 547
             +      SP      I         F+  F        +E      + +++   + + 
Sbjct: 442 YDLKAVSRMSPLAAVNYIRQGVGY-DGFLEEFAAGRRMKPEELFETADQLKESAAGFKTF 500

Query: 548 QELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           +E    +E Y   +KR   A       + V + T+H +KGLE  +V+++D    V  H  
Sbjct: 501 EEWFRHIEDYGEELKRQAQAGLKEKSQDAVTLATMHGSKGLEFKIVYILDANEGVTPHG- 559

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                             K       EE  RL YV MTRA ++L
Sbjct: 560 ----------------------------------KAALDEDMEEERRLFYVAMTRARERL 585

Query: 663 IICKHSNTSNEKKSNQRTWYDMV 685
            +       ++K    R   + +
Sbjct: 586 HVYAVKERYHKKAELSRFVEEYL 608


>gi|262037611|ref|ZP_06011062.1| ATP-dependent nuclease subunit A [Leptotrichia goodfellowii F0264]
 gi|261748356|gb|EEY35744.1| ATP-dependent nuclease subunit A [Leptotrichia goodfellowii F0264]
          Length = 1055

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 139/886 (15%), Positives = 290/886 (32%), Gaps = 159/886 (17%)

Query: 70   SSFFLTQK----FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               F + K     +  K    + I  +  + ++ L KS  ++          ++      
Sbjct: 268  HELFFSGKNIWNGSKIKGKSVENIIYEMKESRDLLSKSFSDY------IFVNEVIPLHEK 321

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--------VSAWIRYKIDQEI 177
                A  +    EE K        +D+ + T   +   +        V++     I   +
Sbjct: 322  ICEAANMIYNIAEEMKFSTKRFTHDDISVYTYKFIFNEELGFIKDKKVTSDFLELIGGNV 381

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              ++IDE QDTS++QW++++ L           +S + +  VGDEKQSIY + G E +  
Sbjct: 382  ETVMIDEFQDTSVLQWKILKLLL----------NSAKNIICVGDEKQSIYHWRGGEKELF 431

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
             + + +            ++  L  S+RS   ++  V+++F         +         
Sbjct: 432  EKLETLI---------NGTVENLDKSYRSYKKVIENVNRIFEKYSEEWSYN--------- 473

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                                 +       E +        +       A         MI
Sbjct: 474  --------------PVKYRDDEEYSKGYFEYYLQERKPSYKGDEIRPEAAY--EKAIEMI 517

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                I + GK          ++ R       I        N   I    N  F L +H  
Sbjct: 518  KEGEIQNLGKT--------CIICRTNSHLNEIAERL----NKENIPYTLNSSFSLLEHDV 565

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------------- 461
            IK L  L ++ +   + +  +  ++S L       +  +   +H                
Sbjct: 566  IKPLYKLIKYFV-FNNYIYLLEFMRSDLIGCLNSHVKYMLENKHEIERYIREIEEEKFSD 624

Query: 462  ------ETETVYEYIQ-KFANCGISKFQHVIKYIHELIHIAQFCS---PHDFFTLILGAK 511
                  E E + EY +          F  ++  I +L ++++  +     + F+  L  +
Sbjct: 625  FVNSQSENEILPEYKEIDEMKRNNLLFSDILHKIKKLKNLSRSLNSKYLKENFSKKLAEE 684

Query: 512  KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
                 F S   +  I  + +F N          S L E ++ +E     +K+  S + + 
Sbjct: 685  FYVTDFYSTKSD--IKNIFKFFNILKEY-----SDLFEFVTYIEDEKDKLKQLSSEDSDA 737

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP----GIPIWIPQSKS 627
            V +MT+H +KGLE   V      S    +    K+        +      +     +   
Sbjct: 738  VNLMTIHKSKGLEFDTVIYYKKESSGKDNDKDLKVFFDYDEKFEKINKFLVTFPKYEKTF 797

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
             ++  S++ +  ++  + E     YV +TRA   L++      S++ +        ++  
Sbjct: 798  IDSEYSEINEKSEQKEKMESINNDYVALTRAKKNLLLFFEKVVSSKGEVKGELVKRIIDV 857

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                                      W +    +   ++E  I +  D + +   +    
Sbjct: 858  YKSEI---------------------WHSSGKISESKKKEIKISENADFEGLKDIMSYF- 895

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                          +     +  E+ L       +GL +H   + +    E+ RKN  ++
Sbjct: 896  -----------EDNVLKYTASKYETDLEGEFKRKKGLAMHYYFEHMTNDFENDRKNAESA 944

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGR 867
            + ++   +   K    LL  + + + +       +      V    +I   + +  I   
Sbjct: 945  FLSRYGNMLGKKIITELLERMKKFIFD--NKEIYNAKYK--VYTEFEICDRENNKRI--- 997

Query: 868  IDQISISQQ--NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            ID+I+I ++   IFI++YKT +   +        +  QL  Y++IL
Sbjct: 998  IDRINIDEENRKIFIYDYKTGYEPTEN-----EKYKQQLEEYKQIL 1038


>gi|150020672|ref|YP_001306026.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
 gi|149793193|gb|ABR30641.1| UvrD/REP helicase [Thermosipho melanesiensis BI429]
          Length = 630

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 100/595 (16%), Positives = 200/595 (33%), Gaps = 124/595 (20%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-YKMFKSTLASLTLAKYLNAHYEE 139
           +  +I +   K  P  K+ L  +      +        K     L      + +   Y++
Sbjct: 125 RSQLIPKSERKTIPTAKQLLSIASYMNNTLTSLREAIVKYNPRYLEQEHTIEQILVRYQQ 184

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K+    +D++DL+I+T  +L        IR K  ++   IL+DE QDT+++Q++++  L
Sbjct: 185 EKQNQNAVDYDDLLIHTLQILSTNKA---IRLKESEKYKWILVDEFQDTNIVQFKIVELL 241

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
           +          +  + L  VGD+ QSIYSF GA  + V+  ++             +  +
Sbjct: 242 S----------TVHKNLMVVGDDAQSIYSFRGARFENVIDFQKE-----------ATTFK 280

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           +  ++RS+ +I+  ++++       + L    TT I+                       
Sbjct: 281 IQTNYRSSQEIVNFINEMLPKKSIKKKLKATRTTGIKP---------------------- 318

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                        FD   +       A  +A  I           N +   I   +I VL
Sbjct: 319 --------FLVQVFDHYDE-------ADFVANEI----------LNFQHNGISLNEIAVL 353

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +       +   + + I          T+   +KD +A  +  ++ E+ +S++ 
Sbjct: 354 YRAHAHS----LELQLALSKHNIPFKLYSGLRFTETAHVKDCLAFLKTTVNFEEKISWIR 409

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +LK                  +  E + ++     N    K +        +       +
Sbjct: 410 ILK-LATGIGN------IKAENYAEKLSKHGYDAFNEIKEKSKDFHILRDTIKEAIDIQN 462

Query: 500 PHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
           P +   L       ++         E  + ++  +              +  ++++    
Sbjct: 463 PGERIKLFYINFYNKKMEEKFEDYRERKEDIERLIEMATFY-----KIPELFLNDILVSE 517

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                + ++   +V + TVH AKGLE  VVF++      F H                  
Sbjct: 518 SYEIESENSEKEKVTLTTVHQAKGLEWKVVFILSVNPGDFPH------------------ 559

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            I   +++  +E  RL YV +TRA D L I      S+ 
Sbjct: 560 -----------------IMSFRENNLDEEERLFYVAITRAKDYLYIIHSVGGSSR 597


>gi|326776760|ref|ZP_08236025.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
 gi|326657093|gb|EGE41939.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
          Length = 1199

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 122/824 (14%), Positives = 224/824 (27%), Gaps = 128/824 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLS 70
           +    +     L       I    S  +          A+ L++A          FS L 
Sbjct: 140 TISTYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLREAPGPYPALTRSFSTLV 199

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S  L       ++++     +      E L+      +   D     +  ++  + L L 
Sbjct: 200 SDLLALDGELSEHLVRPGTLETYDT--ELLRDLAAARLSNADLRKIPEAAEARRSLLGLT 257

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                 Y  AK+   +LDF D I  + +L L + +V   +R +       +L+DE QDTS
Sbjct: 258 ----ERYRAAKRSRDLLDFGDQIALSAELALTRPEVGRILREE----FRVVLLDEYQDTS 309

Query: 190 LIQWEVIRSLTEDFFVGK------------NTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
           + Q  ++ +L                        +   + AVGD  Q+IY + GA    +
Sbjct: 310 VAQRLLLSALFGAGTAPGEDGQAPSGHAPPGQAPTGHAVTAVGDPCQAIYGWRGASVANL 369

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                         G   +   L  + RS   +L + + +                    
Sbjct: 370 DDFPEHFP---HADGTPATRYSLSENRRSGGRLLQLANGL-------------------A 407

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
              R    G   L              +++               + LA  +A+ +    
Sbjct: 408 EPLRAMHEGVEALRPA--------PGAERDGMVRCALVRTHTEEIAWLADSLAHLVRT-- 457

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                            +I VL R   D P I            I V       L     
Sbjct: 458 ------------GTPPGEIAVLCRTAGDFPEIQAALVA----RDIPVEVVGLAGLLHLPE 501

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------------- 461
           + DL+A+   +     + S V +L  P +     D+  +  +                  
Sbjct: 502 VADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRAGHADDADADQ 561

Query: 462 ------------ETETVYEY-------------IQKFANCGISKFQHVIKYIHELIHIAQ 496
                       E  ++ +                 F+     +F  + + + +L   + 
Sbjct: 562 RLADAVEGTDPAEVISLADALDTFLVVADAADDGLPFSAEARVRFARLARELRDLR-RSL 620

Query: 497 FCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELIS 552
                D    +L       +  +          + L  FL+   R    +  +SL   + 
Sbjct: 621 ADPLMDVLHRVLATTGLEVELSASPQALAARRRETLANFLDVAARFASLDGEASLLAFLG 680

Query: 553 ELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-- 607
            L            A     N V+++T H +KGLE  VV      +  F     ++    
Sbjct: 681 FLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAAPGLVTGQFPSDRGREAWIA 740

Query: 608 -----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                      D   +P   P        V      +K+    E  RL YV  TR    L
Sbjct: 741 QPQVLPHALRGDAATLPALDPHDGLDAKAVKAFKAEMKEHQHTEELRLGYVTFTRPRSLL 800

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
           +   H    ++K++   + +             +     +   +DE              
Sbjct: 801 LGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEENPALAERDADLAW 860

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           PL  +          +                Y   P+ +   G
Sbjct: 861 PLPLDADALARRRAARDTVLAHLERLAAGEPSYGPAPADVPADG 904



 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 64/291 (21%), Gaps = 36/291 (12%)

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              +  ++          D          R  +          E      S         +
Sbjct: 928  WDALPTDRPPGPPEAEPDTDPVPHIPAARHPREDPAAGRLTPEEARTLASWDR------D 981

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
             +    +L   +   +++  P      +   L         +              RG  
Sbjct: 982  LDSLAGELRRARASVREVLVPAALSATQLLRLAEDPDAFARELARPMPRPPQPAARRGTR 1041

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
             H  ++                Y      +    E      +   + +   +        
Sbjct: 1042 FHAWVES--------------RYEELPLPMLGPDELPGGDENDAEIADERDLAELKEAFE 1087

Query: 846  YSEVS------VSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
             +  +      V           +I GRID +  +     I ++KT  H   +       
Sbjct: 1088 RTPYARRTPYRVEAPFQITLAGRVIRGRIDAVYRTGDRYEIVDWKTTRHRTADP------ 1141

Query: 900  HIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
               QL++Y     + +  P   +    +YV   +               I 
Sbjct: 1142 --LQLAVYRLAWAELHGLPLDEVSATFLYVRSGETVRPRDLPGRAELERIL 1190


>gi|329119934|ref|ZP_08248608.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC
            BAA-1200]
 gi|327464090|gb|EGF10401.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC
            BAA-1200]
          Length = 1265

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 129/930 (13%), Positives = 255/930 (27%), Gaps = 171/930 (18%)

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
                      +             T   L   +Y+    +  ++       +DL+++   
Sbjct: 385  AALSPFHRVRQAAAALTAASRDALTALQLDFLQYVRQTADAQRQTRQTRSPDDLLLDLYH 444

Query: 159  LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
             L     S  +   + Q     LIDE QDT  +Q+E+ R +           ++ R LF 
Sbjct: 445  ALTAGAHSEQLAQTVAQNWPFALIDEFQDTDPLQYEIFRRIF---------VANGRPLFL 495

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            VGD KQ+IY F GA+    L+       R T          L  ++RS + +   V  +F
Sbjct: 496  VGDPKQAIYGFRGADIHAYLQAAADTPNRYT----------LAHNYRSHSRLTDTVGSLF 545

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
            +       L   +   +                 +  S+        +  W    D    
Sbjct: 546  TRKNRPFVLEGIAYPAVSA--------------PRAESRVSPPQPAVRVRWLHGADETEA 591

Query: 339  ESS--ASILARRIAYTISNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                     A   A  I+ ++        N      ++  I VLV       ++      
Sbjct: 592  NKDTLRQRAADYCADEIAALLNLAAEGRLNVNGCPAESGQIAVLVHSHNQGRMVKRALAA 651

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                  I  V   R  +      + L AL  F L          +L   LF+ +  ++++
Sbjct: 652  ----RNIRSVSVQRESVFQSPEAQALAALLDFWLEPRRAEPLRFVLGGVLFSRTAQELYE 707

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            +                            I    +   I Q    +   T          
Sbjct: 708  LNRNEK------------------SLSEHIAAAEQCREIWQRQGIYAALTAFARRYGLET 749

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANH 569
            + +++     +    +     L  E  +  S   L + L                  ++ 
Sbjct: 750  RLLAQRNERSLTNFWQLAEL-LAAEDEAAHSPPSLRNWLLSQMQDASAAENTVLRLESDE 808

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              V+I+T+H +KGL+ P VF   +     +   +  +      ++               
Sbjct: 809  ALVKIVTIHASKGLQYPFVFCPFSWDTSEARGAMWHILRREHGSELLAAAQ--------- 859

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
             +       L      E  RLLYV +TRA +QL++   +  S +        Y +     
Sbjct: 860  -LGEADQNQLADEDLGERLRLLYVALTRAEEQLVLYAAACKSKKNSRLNTFAYLLAGRPD 918

Query: 690  HNDERVKK--IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                +V+     + N          +W    P N  L +E      +     P+      
Sbjct: 919  DTRAQVQTACASVENPAALLRQNWLDWIDAAPANAVLWQEGAPPAAVLRPSRPRTSEYRA 978

Query: 748  KNDINEP-------------YILNPS------------TIDTKGKTNLESLLSD------ 776
                                  L  S             +D   +  L     D      
Sbjct: 979  AEYPPRRFEFVRHTSFTGLTRSLAHSGTQDETADEMQPALDNAERLPLPESAPDAPAAYD 1038

Query: 777  ----NQTFNRGLIIHKLLQ-VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
                 Q    G+ +H++L+   F  P  ++   I     +             L ++ + 
Sbjct: 1039 IFHFPQGAQAGVCLHEILEKHRFGRPAAEQHPLIADTLERYGYG------AEWLPAVAQT 1092

Query: 832  LENPMMTTAMSCDSYSEVS---------VSGKINCPKKDII------------------- 863
            +++         D+ + +               +      +                   
Sbjct: 1093 VQHTADADLWRGDTLAALPGVRRISETGFVMHFDQLDTGRLKNSLAAAGLSPACLAAAEK 1152

Query: 864  ---------ISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIP---------YTHIAQL 904
                     ++G ID    +S     + +YK++H   +  ++ P         + +  Q 
Sbjct: 1153 LDFGTLKGFLNGYIDMTCLLSDGQPCVIDYKSNHLGHRPEDYAPAALDAAMAEHHYYLQA 1212

Query: 905  SIYEKILKDS-----YPNKSLVCLLIYVSE 929
             IY            +P  ++    +++  
Sbjct: 1213 WIYALAAARMLQQRRHPVSTVRVRYLFLRG 1242


>gi|323483653|ref|ZP_08089037.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
 gi|323403080|gb|EGA95394.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163]
          Length = 611

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 103/563 (18%), Positives = 180/563 (31%), Gaps = 122/563 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + + + YEE  ++  ++DF+D+++    L  +      I     +   +ILIDE QD + 
Sbjct: 160 RRICSGYEEQMRRLGLIDFDDMMVMCRQLFLE---RQDILAAWQRRYRYILIDEFQDINR 216

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+E+IR + E              LF VGD+ QSIY F GA+P+ +L  +R        
Sbjct: 217 LQYEIIRMIAE----------PENNLFIVGDDDQSIYRFRGAKPEIMLGFERDYP----- 261

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L +++R T +I     ++    E                            
Sbjct: 262 ---GAGRILLDVNYRCTEEIAGPAMRLIENNEKRFSK----------------------- 295

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
             ++ +            W   F+             RIA  I                 
Sbjct: 296 --KIRTNGARGKQIITRIWQDSFEENN----------RIAEEIKAYQAAG---------- 333

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFIL 429
            +  DI VL R          L      +Y +     D    L +H   ++++   R  L
Sbjct: 334 YRYGDIAVLYRTNSGPR----LLMEKLMEYNLPFKARDSVPNLYEHWISRNILTYIRIAL 389

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              +   F+ ++  P    S D +       +E    Y                 I+ + 
Sbjct: 390 GSRERADFLQIINRPKRYISRDSLRNPQVSFNELREWY--------HDKDWVADRIENLE 441

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--SYSSL 547
             +      SP      I         F+  F        +E      + +++   + + 
Sbjct: 442 YDLKAVSRMSPLAAVNYIRQGVGY-DGFLEEFAAGRRMKPEELFETADQLKESAAGFKTF 500

Query: 548 QELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           +E    +E Y   +KR   A       + V + T+H +KGLE  +V+++D    V  H  
Sbjct: 501 EEWFRHIEDYGEELKRQAQAGLKEKSQDAVTLATMHGSKGLEFKIVYILDANEGVTPHG- 559

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                             K       EE  RL YV MTRA ++L
Sbjct: 560 ----------------------------------KAALDEDMEEERRLFYVAMTRARERL 585

Query: 663 IICKHSNTSNEKKSNQRTWYDMV 685
            +       ++K    R   + +
Sbjct: 586 HVYAVKERYHKKAELSRFVEEYL 608


>gi|187918490|ref|YP_001884053.1| exodeoxyribonuclease V beta chain [Borrelia hermsii DAH]
 gi|119861338|gb|AAX17133.1| exodeoxyribonuclease V beta chain [Borrelia hermsii DAH]
          Length = 1157

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 143/901 (15%), Positives = 280/901 (31%), Gaps = 120/901 (13%)

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
            +  K   ++  L++   E    ++  NT + F +      + KY+             +D
Sbjct: 281  LLPKELKIQTALRELSHETNTDKEDKNTLRRFINLKVEYKILKYIERELATTINATNTID 340

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
             + +++N    L+ RD    +   I      ILIDE QD  LIQ E+   L+        
Sbjct: 341  QKQIMLNLKKHLESRDNR--LLNSIKNRYKIILIDEAQDLDLIQIEIFELLS-------- 390

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
              S    L  + D KQ IY+F  A+            +   +  +  + I L  ++RS  
Sbjct: 391  --SCGIKLVFIADPKQIIYTFRNADISF-------YNQNIKDKIKDDARITLLTNYRSNK 441

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
             ++  ++ +F                  +  +R  ++  ++  +      + +       
Sbjct: 442  KLIEPLNIMFDNI---------------YNKARTDEIEQIKFTKSKTDPKNDENKIFVNG 486

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                  ++ +      + ++ A TI  ++    I+ N K R I+  DI VL R  K+   
Sbjct: 487  QEIEAINIIETEEDKNVLQKTALTIKYLLTNGKIYDNNKLRQIKESDIKVLCRTSKEVDF 546

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            I    +                          +  L + +  +++  +   +L S + N 
Sbjct: 547  IDRELKNQDVKTN-----KLAESFFKTKEFNLIFYLIKCLDRKQNFQTLNYILTSKIINL 601

Query: 449  SED------DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              +      +   I         +   ++      I     +I      +++A+      
Sbjct: 602  PWELYLSLLEENGIKHIEEAIIDIIYLLENQEITLIEAIDEIISKKDLWLNLAKNFRNTT 661

Query: 503  FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR--NEQNSYSSLQELISELEQYPPT 560
            F       K  R+  I+    E +   +  L+F  +   E  +  SL   + +L      
Sbjct: 662  FTEFAQSKKSYREILINEGKFEELKNYETSLDFISKIYYEDKNIESLISTLEDLILNKDI 721

Query: 561  IKRAH---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
             +      + ++  + I+T+H +KGL   +VFL+       +                  
Sbjct: 722  EQDEDKITTGDNQAIEILTIHKSKGLSINIVFLIGDIQNNDNLLKKSDTFY--------- 772

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                  + +     + +  +  K     E   + YVG TRA   L I     T N+    
Sbjct: 773  KFYSKNKIEYDFLKLKENQQFAKNKILNEEQNIFYVGTTRARFALFIINQGATINKMLEL 832

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                     +   N   + K    N ++ ++    +     P N  L R+E         
Sbjct: 833  AEIKTIEKINLNFNVYNLIKTNQFNKLDINDNKEIKLIPPKPINKYLFRKEHTHSYTSLA 892

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
             I K            P   N  T D     + E+L    +  + G I+H ++Q I    
Sbjct: 893  SIYKSNHH------ENPETRNDETYDNDATCSGETL---PRGKDIGNILHAIMQDINFSD 943

Query: 798  EHKRKNFITSY---------CTKNAKLWPAKEYKNLLLSITRLLEN------PMMTTAMS 842
                 N                 N+KL   K  + L+  I  +L          +     
Sbjct: 944  AKDSFNNFQKINIALIQKKIEHFNSKLNTPKLQEMLIKMIYNILNTKIRFIGARLCDI-- 1001

Query: 843  CDSYSEVSV-----------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
             +   E+                     K++    D  I G ID I      I+I +YKT
Sbjct: 1002 QELQKEMEFLIKINTKIYEQKSLFKDHNKLDLVLNDGYIKGIIDLIFKINNKIYILDYKT 1061

Query: 886  HHHVPQEIEHI---------PYTHIAQLSIYEKILKDSYPNKSLVCL--------LIYVS 928
            ++      ++             +  Q  IY   +K     K++            ++  
Sbjct: 1062 NYLGENLKDYNLTNLKKKMKQEQYDLQYKIYALGIKKILF-KNIEEYNKHFGGVIYLFTR 1120

Query: 929  E 929
             
Sbjct: 1121 A 1121


>gi|33319803|gb|AAQ05776.1|AF478168_1 exodeoxyribonuclease V [Borrelia hermsii]
 gi|37727294|gb|AAO39714.1| exodeoxynuclease V beta chain [Borrelia hermsii]
          Length = 1146

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 143/901 (15%), Positives = 280/901 (31%), Gaps = 120/901 (13%)

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
            +  K   ++  L++   E    ++  NT + F +      + KY+             +D
Sbjct: 270  LLPKELKIQTALRELSHETNTDKEDKNTLRRFINLKVEYKILKYIERELATTINATNTID 329

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
             + +++N    L+ RD    +   I      ILIDE QD  LIQ E+   L+        
Sbjct: 330  QKQIMLNLKKHLESRDNR--LLNSIKNRYKIILIDEAQDLDLIQIEIFELLS-------- 379

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
              S    L  + D KQ IY+F  A+            +   +  +  + I L  ++RS  
Sbjct: 380  --SCGIKLVFIADPKQIIYTFRNADISF-------YNQNIKDKIKDDARITLLTNYRSNK 430

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
             ++  ++ +F                  +  +R  ++  ++  +      + +       
Sbjct: 431  KLIEPLNIMFDNI---------------YNKARTDEIEQIKFTKSKTDPKNDENKIFVNG 475

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                  ++ +      + ++ A TI  ++    I+ N K R I+  DI VL R  K+   
Sbjct: 476  QEIEAINIIETEEDKNVLQKTALTIKYLLTNGKIYDNNKLRQIKESDIKVLCRTSKEVDF 535

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            I    +                          +  L + +  +++  +   +L S + N 
Sbjct: 536  IDRELKNQDVKTN-----KLAESFFKTKEFNLIFYLIKCLDRKQNFQTLNYILTSKIINL 590

Query: 449  SED------DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              +      +   I         +   ++      I     +I      +++A+      
Sbjct: 591  PWELYLSLLEENGIKHIEEAIIDIIYLLENQEITLIEAIDEIISKKDLWLNLAKNFRNTT 650

Query: 503  FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR--NEQNSYSSLQELISELEQYPPT 560
            F       K  R+  I+    E +   +  L+F  +   E  +  SL   + +L      
Sbjct: 651  FTEFAQSKKSYREILINEGKFEELKNYETSLDFISKIYYEDKNIESLISTLEDLILNKDI 710

Query: 561  IKRAH---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
             +      + ++  + I+T+H +KGL   +VFL+       +                  
Sbjct: 711  EQDEDKITTGDNQAIEILTIHKSKGLSINIVFLIGDIQNNDNLLKKSDTFY--------- 761

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                  + +     + +  +  K     E   + YVG TRA   L I     T N+    
Sbjct: 762  KFYSKNKIEYDFLKLKENQQFAKNKILNEEQNIFYVGTTRARFALFIINQGATINKMLEL 821

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                     +   N   + K    N ++ ++    +     P N  L R+E         
Sbjct: 822  AEIKTIEKINLNFNVYNLIKTNQFNKLDINDNKEIKLIPPKPINKYLFRKEHTHSYTSLA 881

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
             I K            P   N  T D     + E+L    +  + G I+H ++Q I    
Sbjct: 882  SIYKSNHH------ENPETRNDETYDNDATCSGETL---PRGKDIGNILHAIMQDINFSD 932

Query: 798  EHKRKNFITSY---------CTKNAKLWPAKEYKNLLLSITRLLEN------PMMTTAMS 842
                 N                 N+KL   K  + L+  I  +L          +     
Sbjct: 933  AKDSFNNFQKINIALIQKKIEHFNSKLNTPKLQEMLIKMIYNILNTKIRFIGARLCDI-- 990

Query: 843  CDSYSEVSV-----------------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
             +   E+                     K++    D  I G ID I      I+I +YKT
Sbjct: 991  QELQKEMEFLIKINTKIYEQKSLFKDHNKLDLVLNDGYIKGIIDLIFKINNKIYILDYKT 1050

Query: 886  HHHVPQEIEHI---------PYTHIAQLSIYEKILKDSYPNKSLVCL--------LIYVS 928
            ++      ++             +  Q  IY   +K     K++            ++  
Sbjct: 1051 NYLGENLKDYNLTNLKKKMKQEQYDLQYKIYALGIKKILF-KNIEEYNKHFGGVIYLFTR 1109

Query: 929  E 929
             
Sbjct: 1110 A 1110


>gi|53690303|ref|ZP_00346176.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium
           longum DJO10A]
          Length = 454

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 75/445 (16%), Positives = 137/445 (30%), Gaps = 76/445 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   + P+      S  +      +     +I      L+         +  
Sbjct: 75  AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-----GLKSGFSIYDSADS- 128

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKST 123
             L     T+     K    + I     DLK  L   ++        F        F + 
Sbjct: 129 ERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTV 188

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   + A YE        +DF+DLI  T +LL+       +         +IL+D
Sbjct: 189 GDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPA---VAEYYHHRFRYILVD 245

Query: 184 EVQDTSLIQWEVIRSLTEDFF-------VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+  Q+ ++R L                  S P  +  VGD  QSIY+F GA+ + 
Sbjct: 246 EYQDTNHAQYVLVRELAGVDTGEKAIPGAPNAGKSGPAWITVVGDSDQSIYAFRGADIRN 305

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   ++               I L  ++RST  IL   + V S  E  +           
Sbjct: 306 IQDFEQDFPN--------AKTIMLEQNYRSTQTILDAANAVISNNEGRKPKK-------- 349

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW  +          +     +  +       A   A+ +A  I+ +
Sbjct: 350 -------------LWTAL-------GKGEPIVGYAADN-------AQQEAQWVATEIARL 382

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                         I   D+ ++ R    +  +         +              +  
Sbjct: 383 HAEA---------GIAYSDMAIMYRANAQSRSLEEAL----INTNQPYQLVGGTKFYERR 429

Query: 417 AIKDLMALGRFILSQEDDLSFVCML 441
            IKD +A  + +++ +DD++   +L
Sbjct: 430 EIKDALAYLQALVNPDDDVNLRRIL 454


>gi|283798327|ref|ZP_06347480.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
 gi|291073910|gb|EFE11274.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1]
          Length = 618

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 112/673 (16%), Positives = 209/673 (31%), Gaps = 130/673 (19%)

Query: 22  PLPYFQVSDINKYVSLSMETG---NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
                      + +      G     T       + + +      +           ++ 
Sbjct: 58  AAAREMKERFERLMEGRCLRGQVSFGTFHAVFFRILKLAYGYEAADIIREDQRLRFMREL 117

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
             ++ +  ++ N+    L  ++   + E I +   +      ++        K + A YE
Sbjct: 118 VAKEQLEPEDENELIASLLSEISSVKGELIDLDHYYAKSCSEEA-------FKRIYAGYE 170

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           E  ++N  +DF+D+++   +L ++      I     ++  +IL+DE QD + +Q+E++R 
Sbjct: 171 ERLRRNRKIDFDDMLVMCYELFRQ---RPDILGAWQKKYAYILVDEFQDINRLQYEIVRM 227

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L                LF VGD+ QSIY F GA P+ +L  +R               +
Sbjct: 228 LAA----------PRNNLFIVGDDDQSIYRFRGARPEIMLGFERDYP--------DAGRV 269

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L +++RST +I+    ++    E     S              G  G   +      + 
Sbjct: 270 LLDVNYRSTKEIVDASLRLIGNNEKRFKKSL----------RTAGSRGRKVITRVWKDEE 319

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
           +                            RIA  I                    +DI V
Sbjct: 320 EENS-------------------------RIAEEIRMYSEAG----------CAYRDIAV 344

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSF 437
           L R                 +Y +     D    L +H   K+++A  R  L   +    
Sbjct: 345 LYRTNSGPRR----LIEKLMEYNLPFKARDVVPNLYEHWISKNILAYIRVALGSRERGEV 400

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
           + M+  P    S D +        E +  Y                 I+ +   +     
Sbjct: 401 LQMINRPARYISRDALQAPQISFDEVKGYY--------RDKDWMVERIESLEFDLTAISR 452

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN--SYSSLQELISELE 555
            SP      I  +               +   DEFL    + +++   Y +     S + 
Sbjct: 453 MSPLAAVNYIRKSVGYDAWLYEYAAAHRMKA-DEFLETADQLKESAARYKTFDAWFSHIS 511

Query: 556 QYPPTIKRAHSANH---NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           +Y   +KR         + V + T+H++KGLE  VV+++D    V  H            
Sbjct: 512 EYGEELKRQAREREQTADAVTLSTMHSSKGLEYRVVYILDANEGVTPHS----------- 560

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                   K +  +  EE  RL YV MTRA  +L +       +
Sbjct: 561 ------------------------KAVLDADIEEERRLFYVAMTRAKQRLHVYSVKERYH 596

Query: 673 EKKSNQRTWYDMV 685
           +     R   + +
Sbjct: 597 KPAEVSRFVEEYL 609


>gi|226313609|ref|YP_002773503.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599]
 gi|226096557|dbj|BAH44999.1| putative ATP-dependent DNA helicase [Brevibacillus brevis NBRC
           100599]
          Length = 805

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 99/685 (14%), Positives = 207/685 (30%), Gaps = 124/685 (18%)

Query: 8   SLNESYELIYKD--LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           + +E  + I +               +      +    P         ++  Q + +++ 
Sbjct: 235 AADEIRQRIARQLPAGQARELIAGTFHSIFYRMLLHHQP---------ERWDQQRLLKKD 285

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           +        T       ++ T +  + +  L    +   +  +     +      ++T  
Sbjct: 286 WQKWRLMRETGALLGHDDLATLKETEITEALGIISRWKNEYILPHEVAYR-----EATSD 340

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           +   A  L   YE  KKK+   DF+D++I   ++L+       +  +  + + ++++DE 
Sbjct: 341 AEKRAIQLYPLYEATKKKHQWFDFDDMLIGCYEMLRDDPG---LLRRYQERLTYVMVDEF 397

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + IQ+E ++ L                L  +GD+ QSIY F G++P+ +L   +   
Sbjct: 398 QDINRIQYETVKLLAA----------PQNNLCVIGDDDQSIYGFRGSDPQYILGFTKDFP 447

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +         S   L +++RS + I+++   +             S              
Sbjct: 448 Q--------ASTFTLEVNYRSHSSIVSLGYSLIGHNRERWAKECQSFHR----------- 488

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                         L +       A RI   I +      I   
Sbjct: 489 ------------------------EEGDTYLFEPEDEEEQASRIVDEIIHRREQGAIL-- 522

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFILTDHLAIKDLMAL 424
                    +  +L R  +    I            I      +         ++  +  
Sbjct: 523 --------GECAILYRTNESARPILERLSE----AGIPFHYTQEEESFYQRQTVRWTLNY 570

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
            R  L+ +D  +   +L +     S +    + +Q    +    ++           +  
Sbjct: 571 LRLALNPDDTDALKEILST--LYISAEMWNALRSQAIIEDKPILHVLPHLTQLKPYQRKH 628

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLRNEQN 542
           ++ I+E++   +   P     LI    K R     R     +  +   + L   L   + 
Sbjct: 629 MQQINEILTACKDVPPAQALELIYEDGKLRDYLKKRAKDREDGRERWSDELQQILAASKR 688

Query: 543 SYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +++ + ++ ++Q        +         V ++++H AKGLE   VFL D       
Sbjct: 689 H-ATISDFLAYIDQMTRQEKEWRTMRPLPDEAVHVLSIHRAKGLEYDHVFLPDLVEGALP 747

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H++                                          EE  RLLYV +TRA 
Sbjct: 748 HEYTLDELRKGGSG-----------------------------ALEEERRLLYVAITRAR 778

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDM 684
             L I         K    R   +M
Sbjct: 779 HSLCIGIPRERFGRKTRTSRFIAEM 803


>gi|320095653|ref|ZP_08027311.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977414|gb|EFW09099.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 525

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/473 (16%), Positives = 142/473 (30%), Gaps = 80/473 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E I   +                + +          A  L  +      ++   
Sbjct: 88  AAAEMRERIAALVGDEAGRMWVSTFHSACVRILRYEHE----AAGLSGSFTIYDAQDSQR 143

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L+    L  +    K    + +  +  DLK +L    + + ++  +              
Sbjct: 144 LMQMV-LKAQDVDVKRFTPKMVAARVSDLKNELIG-PERYAEVAGKD----------PVS 191

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +     A Y++  + +  +DF+DLI+ T  LL++  +   I     +   HIL+DE QD
Sbjct: 192 RIVAAAYAEYDKRLRDSNAVDFDDLIMRTVLLLQRNPL---IAEHYHRRFRHILVDEYQD 248

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L      G      P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 249 TNHAQYVLVRELVGAGDDGV----VPAELTVVGDSDQSIYAFRGATIRNIEEFERDFP-- 302

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V S  +  +  +                   
Sbjct: 303 ------GARTILLEQNYRSTQNILSAANAVISRNQGRRPKN------------------- 337

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW         + +    +  +         S    AR +   I  +           
Sbjct: 338 --LW-------TQEGDGAPITVDAA-------DSEYDEARFVVSEIDRVADAG------- 374

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI V  R    +         L     I           +   IKD +A  + 
Sbjct: 375 ---ADWGDIAVFYRTNAQSR----ALEELLVRQGIPYRVVGGTRFYERREIKDALAYLQV 427

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           + + +D ++   ++  P           I          +            +
Sbjct: 428 VSNPDDTVAARRVINLPKRGIGAKAEEAIAAHAARHGVSFGRALAHLWIRQGR 480


>gi|157691896|ref|YP_001486358.1| UvrD Rep family helicase [Bacillus pumilus SAFR-032]
 gi|157680654|gb|ABV61798.1| possible UvrD Rep family helicase [Bacillus pumilus SAFR-032]
          Length = 770

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/627 (15%), Positives = 186/627 (29%), Gaps = 120/627 (19%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L  F   ++   +K I+ + +++K     + L+                   +     
Sbjct: 243 QHLIKFDWQKEQYIRKAIMNEGLDEKDYPTDQVLQSIGYWKNAFLPGDLPDLKDEKEKHM 302

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            T    +   YE+ K+ N   DF+D+ I    +L ++     +  +      +IL+DE Q
Sbjct: 303 WT----IYQSYEQQKRDNQQFDFDDMAIACLHMLTEQPE---LLKRYQDRFQYILVDEFQ 355

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q+++I+ L  +             LF VGD+ Q+IY+F G+ P  +L  KR    
Sbjct: 356 DINPVQYQLIQLLAGESEQ----------LFCVGDDDQAIYAFRGSNPAFILEFKRDYP- 404

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     I+ L  ++RS   I+   D +    ++    +  +               
Sbjct: 405 -------SAQIVHLHANYRSHHTIVASADAIIKKNQHRYEKTLKAVR------------- 444

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                +    +D   +       A  I   I   I         
Sbjct: 445 ---------------SETIPPTLFYPYDEEEE-------ATMIVADIQEKIKNG------ 476

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALG 425
                +  DI VL R       I        +   I                ++ L+A  
Sbjct: 477 ----AKPNDICVLFRTNTGGRAIYERL----HQSAIPYETEAGVKAFYSRRIVRVLLAFL 528

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI---QKFANCGISKF 481
                 +D  +   +L  P+F   +  +  +      E  ++ + +            K 
Sbjct: 529 SLSQDADDVAAMKQLL--PVFFLKQQTLNTMKALTITEDCSMVDALGKLTDIQPFQQKKL 586

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRN 539
           Q ++     L ++    +   F    +G     ++ ++      +  D + +      R 
Sbjct: 587 QSIVPLFRTLRNLKPSDAV-AFIEQKMGLGDYLKKRVNDTNVLEKGTDDVRDVKTAAKRF 645

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E     +++  ++  E      K         V++MT+H AKGLE   V++         
Sbjct: 646 E-----TIEAFLAHAEHMKSAEKEKTDEPG--VQLMTIHRAKGLEFQTVYITCVVDGALP 698

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H                     +                             YV MTRA 
Sbjct: 699 HDFSLDELRNGDEEALEEERRLL-----------------------------YVAMTRAE 729

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVY 686
             L +   S    +     R  Y ++ 
Sbjct: 730 QSLYLSVPSFRRGKTAHRSRFLYPLLK 756


>gi|320168377|gb|EFW45276.1| ATP-dependent DNA helicase Rep [Capsaspora owczarzaki ATCC 30864]
          Length = 1072

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 91/606 (15%), Positives = 185/606 (30%), Gaps = 120/606 (19%)

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + R +            ++  A  +   YE   + + +LDF+DL++    L +  +    
Sbjct: 177 EARVQLQKKTAQHYEKHNMAHAADVFEAYERNLRASNLLDFDDLMLFGLRLFRTNE---- 232

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
              ++       L+DE QDT+ +Q+ +  ++            +   +  VGD  QSIY 
Sbjct: 233 ---RVLAPYTQALVDEFQDTNKLQFSMAETMFR----------TVHNITVVGDPDQSIYG 279

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F  AEP          ++       + ++I L  ++RST  +L +   V S   NA+ L 
Sbjct: 280 FRFAEPTS-------FKRIQEIDPARTTVISLIQNYRSTNSVLRLARTVISSKSNAESLE 332

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                             +    ++    D   +       AR 
Sbjct: 333 LF----------------------------TENGDGVPATFLQAQDPDEE-------ARV 357

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IAY I  ++             ++  D  +LVR    T  I          Y++      
Sbjct: 358 IAYEIMRLVRN---------CNLKFSDFAILVRVNAMTRAIETAL----ASYQLPYRMVG 404

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC----TQRHETE 464
                D   I+D +AL R + +  D +SF  +   P     +  I KI       R    
Sbjct: 405 GLRFFDRKEIRDCVALLRLVSNPSDFISFERVANVPKRGVGDSSISKIIDEALMYRTNPL 464

Query: 465 TVYEYIQKFANCGISKF---QHVIKYI--HELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
            +     +     ++ +   Q   + +    + H++   +  D    IL          +
Sbjct: 465 GLIMEHDRVTGMNVNAWTSLQTFCELLLDCRMRHMSGKLNVRDMLHTILTRIGYFAHLEA 524

Query: 520 ---RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN------ 570
                    I+ ++E L    R +    S+ + +    ++     +   +          
Sbjct: 525 TEPDDYKTRIENVNELLAIAARFDAEGLSAAEVVSLSTQRDANQAQAQATTQSATTPNPA 584

Query: 571 ----------------------------EVRIMTVHTA--KGLESPVVFLVDTGSQVFSH 600
                                           MT+H +     E   +  + + +     
Sbjct: 585 AAAPEAPAKKLTLKEKTAQKARQSALYRSAVAMTMHGSGRSISEFAELVSLQSSTDSAET 644

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                +  + +        +++P  +         +      +  E  RLLYVG+TR+  
Sbjct: 645 ADAIVVSTLHAAKGLEWACVFLPGVEEMMLPHYMAVSTDNPESIAEEKRLLYVGVTRSQF 704

Query: 661 QLIICK 666
            + +  
Sbjct: 705 FVYLSA 710


>gi|224023773|ref|ZP_03642139.1| hypothetical protein BACCOPRO_00489 [Bacteroides coprophilus DSM
           18228]
 gi|224016995|gb|EEF75007.1| hypothetical protein BACCOPRO_00489 [Bacteroides coprophilus DSM
           18228]
          Length = 675

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 108/755 (14%), Positives = 232/755 (30%), Gaps = 91/755 (12%)

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +QWE    L ++    K           VGD KQSIY +   + K +             
Sbjct: 1   MQWENFHLLLQESLAQKEGS------LIVGDIKQSIYRWRNGDWKILAGLGND------- 47

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
              +     L  ++RS A+I+   + +F+          ++                   
Sbjct: 48  PSFRIRECSLGTNWRSEANIIRFNNGLFTAACQVLNDRYEAEQGDPCTQLLDAY------ 101

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
               V Q  ++ + +     ++     +E  A  + +++A     +I             
Sbjct: 102 --SDVCQQTARKDEKGYIKLTFLPDNKEEPYAETMLQQLAEETDALIRKG---------- 149

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           IQ KDI +LVRK K  P I              +V ++ F L   LAI  ++   RF+  
Sbjct: 150 IQTKDIAILVRKNKTIPAIADYF---DKHTPYRIVSDEAFRLDASLAICMIIGGLRFLAM 206

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            +D ++   +            +       H+  ++   +    +  +      +  + E
Sbjct: 207 PDDLIAQARL-----------AVAYQNEILHQDISLNTILINKVSDYLP--AGFMLQLEE 253

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           L    +    ++    +         F           L  F +     +Q   S L   
Sbjct: 254 L----KLMPLYELMEKLFIL------FSMERIEHQDAYLCAFYDAVTEYQQKHSSELTAF 303

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH--- 607
           ++  ++               +RI+++H +KGLE   V +     ++ +  +   +    
Sbjct: 304 LTYWDEKLHEKTIPSGEIEG-IRILSIHKSKGLEYHTVLIPFCDWKMENETNSHLIWCSV 362

Query: 608 ------IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                    +  ++  I      S   N+I        +     +   LLYV  TRA   
Sbjct: 363 AGTGKETDIAPFNELDIVPVNYSSAMANSIYRSSYLEERLQLWVDNLNLLYVAFTRACKN 422

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           LII      + +   ++     ++      D  ++  +  +  +K              +
Sbjct: 423 LII--WGKQNQKGTVSELLQEALLQM---KDPPMQHEETDSEEDKSSAPDLYEYGTLCLS 477

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
            P   + +  +L ++ +         +  I        S          E      Q   
Sbjct: 478 EPSAEQASGNRLSEQAEGIPVRLESTETAIE----FQQSNRSADFIRGEEEEEDSTQYIR 533

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
           +G ++H++   I    E      I+     +  L  A++ K +       + +P +    
Sbjct: 534 QGRLLHQVFASI--RQESDLPEAISR-LRFDGILESAEQEKQITRLAQWAMNHPKVKDWY 590

Query: 842 SCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
           +     E+     I    +     + R D++ +    + I ++K               +
Sbjct: 591 NGT--WELFNECAILFTDENGHTQTRRPDRVMMKNGQVIIVDFKFGKKN--------EAY 640

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
             Q+  Y  +L        +   L YV + ++  I
Sbjct: 641 NRQVREYMNLLSAMGYTH-VEGFLWYVFKNELEEI 674


>gi|222100309|ref|YP_002534877.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
 gi|221572699|gb|ACM23511.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359]
          Length = 649

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 103/623 (16%), Positives = 204/623 (32%), Gaps = 134/623 (21%)

Query: 57  SQTQCIEERFSLLSSFFLTQKF-TPQKNIITQEIN-KKSPDLKEKLKKSQDEFIKIRDRF 114
              +  E       S FL +K    +KN     +       ++  LK  ++  I    +F
Sbjct: 123 LDREDSESLMRHARSKFLERKGREERKNFPQPSVLMSIYSYMRNTLKSLRESIIVKNPKF 182

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             +K              +   YE+ K+   V+D+EDL+     L ++      IR +  
Sbjct: 183 LDFKEE---------IAEIFDLYEQEKRSQNVVDYEDLLFFVYRLFEEH---REIRDREA 230

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           +    +L+DE QDT+ +Q+ +I  L+          S    + AVGD+ QSIYSF GA  
Sbjct: 231 ERFLWVLVDEFQDTNYVQYRMIEHLS----------SRHGNVLAVGDDAQSIYSFRGARY 280

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + V    +              I ++  ++RST  I+  ++           +       
Sbjct: 281 ENVEDFIK---------VPGTKIFKIQTNYRSTESIVKFINA----------MLPTRAVP 321

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              +  R   +  V +                           +       AR ++  I 
Sbjct: 322 KVLKPVRKDGMKPVVV---------------------------KTWDRYEEARFVSQRIL 354

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +               + ++I VL R    +       +      +I          T+
Sbjct: 355 ELFEEG----------FKPEEIAVLYRSHSHS----LELQMELARSRIDFRVLSGPRFTE 400

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEYIQK 472
              +KD+++  R + +  D  +++   K   +   +    KI         E +  + + 
Sbjct: 401 SAHVKDVLSFLRIVQNPRDKSAWLRAAK-LFYGIGDRTASKIADLASVYVEEGLDPFEEL 459

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--EVIDVLD 530
                  ++   ++ +  L  +     P +    +L      +   +R+ +  E    ++
Sbjct: 460 KKVNFSGEYARFMEILDHLKKM---ELPGEMIEYVLT-SFYSEYLEARYPDFREREMDIE 515

Query: 531 EFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
             +    R      + L+  +++L       I+R       +V + TVH AKGLE  VVF
Sbjct: 516 RLVEIASRY-----TDLENFLTDLAVTEDVEIQREAFQKEGKVTLTTVHQAKGLEWRVVF 570

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           ++      F +                                      + +   +E  R
Sbjct: 571 VISVNPGDFPN-----------------------------------YFAISEGNLDEEER 595

Query: 650 LLYVGMTRASDQLIICKHSNTSN 672
           + YV +TRA +QL I      ++
Sbjct: 596 IFYVAITRAKEQLYISYQVTGAS 618


>gi|291447590|ref|ZP_06586980.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350537|gb|EFE77441.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 1201

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 123/837 (14%), Positives = 234/837 (27%), Gaps = 130/837 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLS 70
           +    +     L       I    S  +          A+ L++A          FS L 
Sbjct: 118 TISTYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLREAPGPYPALTRSFSTLV 177

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S  L       ++++     +      E L++     +   D     +  ++  + L L 
Sbjct: 178 SDLLALDGELSEHLVRPGTLEAYDT--ELLRELAAAKLSNADLRKIPEAAEARRSLLGLT 235

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                 Y  AK+   +LDF D I  + +L L + +V   +R +       +L+DE QDTS
Sbjct: 236 ----ERYRTAKRSRDLLDFGDQIALSAELALTRPEVGRILREE----FRVVLLDEYQDTS 287

Query: 190 LIQWEVIRSLTEDFFVGK-------NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           + Q  ++ +L      G        +  ++   + AVGD  Q+IY + GA    +     
Sbjct: 288 VAQRLLLSALFGSGGTGSGGSSGGTDPGAAGHAVTAVGDPCQAIYGWRGASVANLDDFPE 347

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                    G   +   L  + RS   +L + + +                       R 
Sbjct: 348 HFP---HADGTPATRYSLSENRRSGGRLLQLANGL-------------------AEPLRA 385

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              G   L              +++                 LA  +A+ +         
Sbjct: 386 MHEGVEALRPA--------PGAERDGMVRCALLSTHTEEIDWLADSLAHLVRT------- 430

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                       +I VL R   D P I            I V       L     + DL+
Sbjct: 431 -------GTPPGEIAVLCRTAGDFPEIQAALVA----RDIPVEVVGLAGLLHLPEVADLV 479

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--------------------- 461
           A+   +     + S V +L  P +     D+  +  +                       
Sbjct: 480 AVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRAGRADDADADRRLAEA 539

Query: 462 -------ETETVYEY-------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
                  E  ++ +                 F+     +F  + + + +L   +      
Sbjct: 540 VEGTDPAEVISLADALDTFLVAGDAADDGLPFSAEARVRFARLARELRDLR-RSLADPLM 598

Query: 502 DFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQY 557
           D    IL       +  +          + L  FL+   R    +  +SL   +  L   
Sbjct: 599 DVLHRILATTGLEVELSASPQALAARRRETLANFLDIAARFASFDGEASLLAFLGFLRTA 658

Query: 558 PPTI---KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IM 609
                    A     N V+++T H +KGLE  VV +    +  F     +        ++
Sbjct: 659 AQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGQFPSGQSRDAWTAQAKVL 718

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK-HS 668
           P         +    S     I     + +K+    E  RL YV  TR    L+      
Sbjct: 719 PHALRGDAATLPALDSFDAKGI-KAFKEEMKEHQHTEELRLGYVTFTRPRSLLLGSGHWW 777

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
             S ++      + + +Y+         +         +E  A                +
Sbjct: 778 GPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEENPALAERDADLAWPLPLDAD 837

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILN-------PSTIDTKGKTNLESLLSDNQ 778
            + +    +         +    +EP           P+      +  L+   +D  
Sbjct: 838 ALARRRAARDTVLAHLERMAVQGDEPEPAYGPGPDDVPAHEPWDEEPPLDEPPADED 894



 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/452 (9%), Positives = 102/452 (22%), Gaps = 55/452 (12%)

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLR-NEQNSYSSLQELISELEQYPPTIKRAHSAN 568
              +G   F+            E   +     E     +L E  ++L    P    A +  
Sbjct: 783  RTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEENPALAERDADLAWPLPLDADALARR 842

Query: 569  HNEVRIMTVH----TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  +  H      +G E    +              ++  +     D+      +P 
Sbjct: 843  RAARDTVLAHLERMAVQGDEPEPAYGPGPDDVPAHEPWDEEPPLDEPPADEDWDWDALPT 902

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
             +    +     + +++                                  +++ T +  
Sbjct: 903  ERPAEPVPDMAPEPVRERAPAPE-----------------AAPHTEPAPDPASEPTPHIP 945

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                   D   +    T             +    +      +    +L   +   +++ 
Sbjct: 946  AARHPQEDPAARHAPETTDPADRLTPEEARTLASWDRDL---DSLAGELRRARATVREVV 1002

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
             P      +   L         +              RG   H  ++             
Sbjct: 1003 IPAALSATQLLRLAEDPDAFAQELARPMPRPPQPAARRGTRFHAWVES------------ 1050

Query: 805  ITSYCTKNAKLWPAKEY---KNLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINCP 858
               Y      +    E          I    +   +  A    +Y+      V       
Sbjct: 1051 --RYEELPLPMLGPDELPGGDESDAEIADERDLAELKEAFERTAYARRTPYRVETPFQIT 1108

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--P 916
                +I GRID +  +     I ++KT  H   +          QL++Y     + +  P
Sbjct: 1109 LAGRVIRGRIDAVYRTGDTYEIVDWKTTRHRTADP--------LQLAVYRLAWAELHDLP 1160

Query: 917  NKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
              ++    +YV   +               I 
Sbjct: 1161 LDAVTATFLYVRTGETVHPQGLPGRADLERIL 1192


>gi|284044826|ref|YP_003395166.1| exodeoxyribonuclease V subunit beta [Conexibacter woesei DSM 14684]
 gi|283949047|gb|ADB51791.1| exodeoxyribonuclease V, beta subunit [Conexibacter woesei DSM 14684]
          Length = 1132

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 137/1022 (13%), Positives = 276/1022 (27%), Gaps = 180/1022 (17%)

Query: 11   ESYELIYKDLWPLPYFQVSDINKYVSLSM-ETGNPTILKKAQTLQQASQTQCIEERFSLL 69
               + I + L       ++ I+ +   ++ E G    L +    Q+  +    E    L 
Sbjct: 108  RRRDRIVRALAEFDAATITTIHSFCQEALGELGFAADLDRDHRFQEDVRDLAEEVVDDLY 167

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
               FLT+    ++    +   K   +    L+                         + L
Sbjct: 168  VRGFLTRPPHFRRAEAGRVALKAIDNPSAVLEP------------RAAGRSTYAGMRVGL 215

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A    A  +  K+   ++ F+DL++   D L+  D    +  ++ +     L+DE QDT 
Sbjct: 216  ATAARAELDRRKRAAALVTFDDLLLRLRDALEGPD-GEAVAARLHRRYRIALVDEFQDTD 274

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              QW ++R             ++  TL  +GD KQ++YSF GA+    L   R       
Sbjct: 275  PDQWAIMRR---------AFAATGTTLVLIGDPKQAVYSFRGADVFAYLDAAR------- 318

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +   L +++RS   +L   D +F                    +      G   
Sbjct: 319  ---AADAHPTLRVNWRSDQRLLDAYDALFGAARLGHDEIVYRQVRAAAANRAPRLHGAPG 375

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK-- 367
                 +               +   +    S+ + +AR +A  +  ++ +          
Sbjct: 376  AAPLRIRVV---PRDAPTVRLTSGGTASPASARAYVARDLAADVVALLESGARIETRDSD 432

Query: 368  -----KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    +   D+ VLVR+      I            +  V      +    + +D +
Sbjct: 433  GRAVGHTPVGPGDVAVLVRRNVQAREIKTALEA----AGVPAVVAGGGSVFASESARDWL 488

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L + +   E          +    +S                      + A      + 
Sbjct: 489  VLLQALERPELLARARAAALTAFLGWSA--------------------VRVAAAAEDAWD 528

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLR 538
             + + +H    + +          I  +++   + +   G E        + E L+    
Sbjct: 529  ELQQRLHAWAGVMRRHGVAALTETITSSERVSVRLLEIVGGERRLTDLRHVGELLHAASA 588

Query: 539  NEQNSYSSLQELISE------LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            +EQ   ++L   +         +       R   ++   V+++TVH +KGLE P+V+   
Sbjct: 589  DEQLGITALAAWLRRRIEAGDRDADADDRARRLESDAEAVQVLTVHRSKGLEFPIVYCPY 648

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                ++            + N               N       +  K+    E  RL Y
Sbjct: 649  LWDPIWIPNEPLPATFHDAANGGARTIDVALD--EDNQDYRRHQRQDKEEQLGEELRLAY 706

Query: 653  VGMTRASDQLIICKHSNTSNEKK----------------------SNQRTWYDMVYDSFH 690
            V +TRA  Q ++    + S+                                D       
Sbjct: 707  VALTRARHQAVVWWAGSWSSRNSALGRLVFERDADGNVPATGSFTPTDEAATDRFRQLAA 766

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE----------ETIKQLMDEQKIP 740
                   ++    ++   W   +      E    +R            TI     E ++ 
Sbjct: 767  AAAGAIAVERATVVDGVRWSPPQEPWTLLEAATFDRALDQRWRRTSFTTITAGAFEARVA 826

Query: 741  KKLFSPIKNDINEPYIL---NPSTIDTKGKTNLESLLSD-NQTFNRGLIIHKLLQVIFTL 796
             +L      D      L   +PS  D    +   SLLS+       G  +H +L+     
Sbjct: 827  SELEEAPGADDAVEIPLLLPSPSGDDRATASAAVSLLSELPAGARIGTFVHSVLEATDFA 886

Query: 797  PEHKRKNFITSY-CTKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYS 847
                            + +     +   L   +   +E P         +          
Sbjct: 887  ASDLDGELTAHIGAALDRRRIDVGDPAALAGGLRAAIETPLGELAGGWRLRDLPRSARLD 946

Query: 848  EVSVSGKINCPKKD----------------------------------------IIISGR 867
            E+     +                                                ++G 
Sbjct: 947  EMGFELPLVGGDAPTGELTLSAVAAVLRAHVAPDDPLAGYAERLSDPALRSHLRGYLAGA 1006

Query: 868  IDQISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIA--------------QLSIYEKIL 911
            ID ++   +     I +YKT+          P+ +                Q  +Y   L
Sbjct: 1007 IDLVARRAEGVPYAIVDYKTNRLAAAGEALTPWHYRPAALAIEMQRSHYVLQALLYAVAL 1066

Query: 912  KD 913
              
Sbjct: 1067 HR 1068


>gi|218663804|ref|ZP_03519734.1| ATP-dependent DNA helicase protein [Rhizobium etli IE4771]
          Length = 814

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 109/679 (16%), Positives = 205/679 (30%), Gaps = 149/679 (21%)

Query: 2   KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ-TLQQASQTQ 60
           ++  G       + +    W          +   +  +   N  I   A  T+     + 
Sbjct: 210 RDVLGSKAGVMADALT---WSG------TFHGIGARLLRDYNKQIGLDADFTIHDREDSA 260

Query: 61  CIEERFSLLSSFFLTQKFTPQK----NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
            +         F  T+   P K     I ++ +N ++  L + L+ +         +   
Sbjct: 261 DLMNLIRHDLGFSKTESRFPAKGTCLAIYSRAVNSET-ALDQVLRDAFPWCAAWEKQLR- 318

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                           L A Y EAK+   VLD++DL++    ++ +  ++  I       
Sbjct: 319 ---------------ELFACYVEAKQAQNVLDYDDLLLYWAQMVGENVIAEDI----GSR 359

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            +H+L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF  A  + 
Sbjct: 360 FDHVLVDEYQDTNRLQASILMAL----------KPGGRGLTVVGDDAQSIYSFRAATVRN 409

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L                 +I+ L  ++RST  ILT  + V  +       +        
Sbjct: 410 ILDFPAAFS-------PPANIVTLDRNYRSTQPILTAANAVIDLASERFTKN-------- 454

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                        LW +  S    +    ++               +  AR +A  + + 
Sbjct: 455 -------------LWTERQSAERPRLVTVRD--------------EADQARYVADKVLDN 487

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                         ++ K   VL R    +  +            I  V        D  
Sbjct: 488 REEG----------LKLKQQAVLFRASHHSGPLEVEL----TRRNIPFVKFGGLKFLDSA 533

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            +KD++A  RF  +  D ++   +++  P    S             +            
Sbjct: 534 HVKDMLAALRFAQNPRDRVAGFRLMQILPGVGPSTAQKALDLMAEDASPLTALAAMPAPP 593

Query: 476 CGISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                +   +  + E+    A + +  +           R   +          L +   
Sbjct: 594 RCGEDWAAFVSMLQEMKSGKAGWPAEIELARRWYAPHLER---LHEDAATRQADLLQLEQ 650

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFL 590
                    Y+S +  ++EL   PP      +     + + + + T+H+AKG E   VF+
Sbjct: 651 IA-----GGYASRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWTRVFM 705

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           ++                                           +     +  EE  RL
Sbjct: 706 LNVVDGCIPSD----------------------------------LAVGATAEIEEERRL 731

Query: 651 LYVGMTRASDQLIICKHSN 669
           LYV MTRA D L +     
Sbjct: 732 LYVAMTRARDGLDLVVPQR 750


>gi|326796039|ref|YP_004313859.1| exodeoxyribonuclease V subunit beta [Marinomonas mediterranea MMB-1]
 gi|326546803|gb|ADZ92023.1| exodeoxyribonuclease V, beta subunit [Marinomonas mediterranea MMB-1]
          Length = 1233

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 122/863 (14%), Positives = 256/863 (29%), Gaps = 158/863 (18%)

Query: 159  LLKKRDVS---AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
             L           +  +I       LIDE QDT  +Q+ +  ++ +D   G+        
Sbjct: 367  ALTDESERVGQQVLAERIRTTYPIALIDEFQDTDPVQYRIFSNIYKDAHEGQKQIGK--- 423

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
               +GD KQ+IY+F GA+    L  K+              I  L  ++RS+A ++  V+
Sbjct: 424  -IMIGDPKQAIYAFRGADIFTYLSAKKD----------AHQIYSLATNYRSSAAMIRAVN 472

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +FS   N   +       ++ R  +               +H       Q  +      
Sbjct: 473  GLFSTQSNPFQVEGIPFVKVKDREVKT-----------TFYRHGQPQAALQFLFLDEEHP 521

Query: 336  LPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +  +     +A R A+ +  ++       +      I+ KD+ +LV           L +
Sbjct: 522  VSVKRYREAMAERCAHHLHRLLNEGLESSAMVGDDPIRPKDVALLVSNFTQA----QLLK 577

Query: 395  FLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
               ++  I  V  +D+  + D     +L+ +   I+ Q  + +    L + L  ++ ++I
Sbjct: 578  SALSERGIPSVYLSDKGSVYDSQEATELLIILNAIIEQGKENATRSALATGLIGWTLEEI 637

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
              +       E      Q++      K       +  L  + +  S       +L  K G
Sbjct: 638  DALNHNDLSYEKWARAFQQYWQLWDDK-----GLLPMLRTLLEDLSIP---ASLLSRKNG 689

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             ++          + L E  +  L +++     L+  I          K     +   VR
Sbjct: 690  ERRLTDLLHL--FEKLQE-KSLELDSKEGVLRFLRLSIQNPNGDSDEQKIRLETDAELVR 746

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+T+H +KGLE P+V+L       F+         +    +   +  + P  +       
Sbjct: 747  IVTIHKSKGLEYPIVYLPFA----FAPVRNASKEALYHDQNGQLMVSFDPTDEEAQQHFD 802

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            +              RL YV +TR+ D   I          K+     ++ +        
Sbjct: 803  EAYAA--------EIRLAYVALTRSKDACFIGSMEVGKGPSKTKAPELHNHLSGVGALVC 854

Query: 694  RVKKIKLTNSIN----------------KDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
              + +   + +                 +      E    +  N   E +  ++Q     
Sbjct: 855  EGEPLDAGDLLPSLMRFAEQQGNALVKVESIGQDDEALPPYQMNNDAELDARVRQFTGHI 914

Query: 738  KIPKKLFSPIKNDINEPYILNP----------------------STIDTKGKTNLESLLS 775
            +    + S     +  P+  +                        + D +      S  +
Sbjct: 915  ERDWWVGSYSSLVVEAPHEASAQPGFDELDIDSGAASNLLDQAVESPDEQAIPEEASRFT 974

Query: 776  DNQTFNRGLIIHKLLQ----------------VIFTLPEHKRKNFITSYCTKNAKLWPAK 819
              +  N G  +H +L+                    L +   +  +  Y T +      +
Sbjct: 975  FPKGANPGTFLHDVLEGKAFNGVTFKKQTQDMGFSELLKVSNQTALDDYFTAHGY---EE 1031

Query: 820  EYKNLLLSITRLLENPM----------MTTAMSCDSYSEVSVSG---------------- 853
                L   +  +L  P+          ++         E+                    
Sbjct: 1032 WADVLRGWLPDMLNAPIISGSEGRAISLSDLAPEQCKKEMEFYIPVSKMNALQLDRIARL 1091

Query: 854  ---------KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY------ 898
                      I       ++ G ID +   +   ++ +YK++H      ++ P       
Sbjct: 1092 HDVVSQSAPPIQDRPLKGMLKGFIDLLFEWEGRYYVLDYKSNHLGYAFEDYNPDAMQTAI 1151

Query: 899  ---THIAQLSIYEKILKDSYPNK 918
                +  Q  IY   L      +
Sbjct: 1152 AEHRYDLQYQIYTLALHRFLKQR 1174


>gi|328884882|emb|CCA58121.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 919

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 113/796 (14%), Positives = 226/796 (28%), Gaps = 116/796 (14%)

Query: 38  SMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            +          A+ L++A          F+ L +  L       ++++  E        
Sbjct: 144 RLLADATRYQLAARVLREAPGPYPALTRSFTTLITDLLALDAELAEHLVPPEKLLAYDSA 203

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
              L    +  +   +     +   +    L L       Y  AK+   +LDF D I  +
Sbjct: 204 L--LTALAEAKLSNAELRKIPEAATARRELLDLVV----RYRAAKRSRDLLDFGDQIARS 257

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +L   R     I   +  E   +L+DE QDTS+ Q  +   L+  F  G    ++   +
Sbjct: 258 AELATTRPEVGEI---LRDEFRVVLLDEYQDTSVAQRLL---LSGLFGQGTGDRATGHAV 311

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            AVGD  Q+IY + GA    +              G       L  + RS   +L + + 
Sbjct: 312 TAVGDPCQAIYGWRGASVANLDDFPEHFP---HADGSPADRYSLSENRRSGGRLLDLANG 368

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           + +     + L            +       + L      + D                 
Sbjct: 369 LAAPL---RALHAGVEALRPAPGAERDGSVRIALLPTHAEEID----------------- 408

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                       +A ++++++ T            +  +I VL R   D P I       
Sbjct: 409 -----------WLADSLAHLVRTGR----------EPGEIAVLCRTATDFPAIHVALVA- 446

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                + V       L     I DL+A+   +     + + V +L  P +     D+  +
Sbjct: 447 ---RDVPVEVVGLSGLIHLPEIADLVAVCEVLQDPGANAALVRLLTGPRWRIGPRDLALL 503

Query: 457 CTQRH---------------------------------------ETETVYEYIQKFANCG 477
             +                                         ++    +    F+   
Sbjct: 504 GRRARLLVHRGGDDPDPEQRLAAAVEGVDPAEVVSLADALDTFLDSGAAADDGLAFSADA 563

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLN 534
             +F  +   +  L   +      D    +L A     +  +          + L  FL+
Sbjct: 564 RVRFARLAAELRALRG-SLADPLMDVLHRVLSATGLEVELSASPHALAARRRETLGHFLD 622

Query: 535 FTLRNEQ-NSYSSLQELISELEQY---PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                   +  +SL   +  L         +  A     N V+++T H +KGLE  VV +
Sbjct: 623 IAAGFASLDGEASLLAFLGFLRTAVQFEKGLDSALPGGENTVKVLTAHKSKGLEWDVVAV 682

Query: 591 VDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
               +  F     ++       ++P         +    + +   + +     ++     
Sbjct: 683 PGLVAGQFPSARARESWTSQPQVLPHALRGDAATLPDIDTWNAKAL-TAFKSEMRDHQHT 741

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY--DMVYDSFHNDERVKKIKLTNS 703
           E  RL YV  TR    L+   H    ++KK    + +   +          ++       
Sbjct: 742 EELRLGYVTFTRPRSLLLGSAHWWGPSQKKPRGPSDFLRSLYDHCAEGHGEIEAWAEEPE 801

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
            +       E         PL+ E   ++      +  +L++        P    P+  D
Sbjct: 802 KDAQNPTLTETGGEQAWPLPLDGESFKRRRRAADDVLARLWATAPQGGRTPVGAAPAPAD 861

Query: 764 TKGKTNLESLLSDNQT 779
                   +       
Sbjct: 862 RHPADRHPADPHPEDA 877


>gi|294676837|ref|YP_003577452.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
 gi|294475657|gb|ADE85045.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003]
          Length = 1049

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 130/967 (13%), Positives = 268/967 (27%), Gaps = 128/967 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +   G  L ++     + L  L  F     ++  S +          + +   +      
Sbjct: 185  RAAEGAPLTDALRRAAQAL--LARFPEGIADQATSDAAIKAFRDDHARLRRAAETDALNS 242

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                +  L +   +++  P          +    L + + ++ +    +           
Sbjct: 243  DWGLWQKLRTLRQSKRGAP--------TPEGYDALAQGVMEAAEAL--LIHPGPLTDARA 292

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
               A +  A+ L A Y+ AK+   ++DF D+I  T  LL        I      EI+ ++
Sbjct: 293  HLAALIHGAQALMAGYDAAKRAGGLIDFADMITETEALLA---ARPEILAATLGEIDCVV 349

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT+ +Q+ ++  L                   VGD KQ+I  F GA+P+      
Sbjct: 350  IDEFQDTNPVQFSLLWRLAR----------GAARALIVGDTKQAIMRFQGADPRLSGALH 399

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                +             L  ++RS   I+  V+ +        G              R
Sbjct: 400  AACPEAVD---------PLDHNYRSDPRIMRFVNAL--------GPVLFPEGYDALAPHR 442

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                        +                               A  IA  ++ ++    
Sbjct: 443  AETGVPALEALVLPKAKKDVS-----------------------APCIAAHVAALLHEGA 479

Query: 362  IFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
              S+   G+ R  Q  D+ VL         +    R      +I   G           I
Sbjct: 480  QVSDRATGQLRAAQPSDVAVLCYTAAKAASVAKALRAEGFAVRIQADG-----WRAAPII 534

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            + + A    +   ED  + +  L           +              +     A  G 
Sbjct: 535  RVVRAALALVADPEDSHAALRYLT-----LGPARL------------PLQAALTLAIDGA 577

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTL 537
                  +  +  L   A   +     + I+ A   R    +     + +  L  F     
Sbjct: 578  LATHAGLAPLLSLAEDAPHLTVAALLSKIIPAAGLRDWAATLEAPAQALADLARFEAEAQ 637

Query: 538  RNEQN----------SYSSLQELISELEQYPPTIKRAHSANHN----EVRIMTVHTAKGL 583
              +              +S Q  +  L          H          + I T H AKG 
Sbjct: 638  AFDALAADLKAAAGFHGASAQVFLGWLAAQTGRDVDRHPDAAGWSAPGIEICTWHAAKGR 697

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD---PGIPIWIPQSKSRNNIVSDLIKHLK 640
            E P+  +     +  +  +  +       + D       +      +     +   + L 
Sbjct: 698  EWPITVVAGLDYKFIARPNTLRAEFDGFDDLDAVLDHAGLGWLPDFAAPEKQAAFAEALV 757

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFHNDERVKKIK 699
               + +  R LYV +TRA D+LI+   +  S EK   +R    +              + 
Sbjct: 758  ADDERDAARELYVALTRARDRLILALPTAPSKEKPRPERMVDLLRARSGLATTTDGTGLT 817

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREET---IKQLMDEQKIPKKLFSPIKNDINEPYI 756
            +         +         E  P  +      + +      +     +P          
Sbjct: 818  ICGESFPARVVMAADPDAGAEAAPDPQPVPRFGLARPHPGTPLRLWRTTPSGLIAPADAA 877

Query: 757  LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
                 +   G          +    RG   H   +V    P                   
Sbjct: 878  RPNLRLIALGAAVRRQRDGFDLATERGSAWHLAFRVAAERP--------ERLAEVGPATG 929

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
             A +    + +    L + ++        + E+ +            I+  +D ++   Q
Sbjct: 930  LAPDTVAQIAAQAAALRHWLLAEGFDR-LHFELPLQ---EIAADGSEINAIVDLLAEGPQ 985

Query: 877  NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFII 935
             + I ++K+        E     + +QL  Y  + + ++  K +    + +++E +V ++
Sbjct: 986  GLLIVDHKSGACP--YPEARFAGYASQLQAYAGLAERAFA-KPVRGLAVNWMNEGEVSVL 1042

Query: 936  PQNKLNK 942
               ++  
Sbjct: 1043 DLQEVPA 1049


>gi|257063577|ref|YP_003143249.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Slackia heliotrinireducens DSM 20476]
 gi|256791230|gb|ACV21900.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Slackia heliotrinireducens DSM 20476]
          Length = 1251

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 140/790 (17%), Positives = 253/790 (32%), Gaps = 109/790 (13%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSME-TGNPTILKKAQTLQQASQTQC 61
                +   S         P      +D+ +    + E  G      KA   + A   + 
Sbjct: 179 RSLANAAASSPAGFDALRVPPEGRGWTDLLRAAWQTWEDMGGVVRNLKASATRDALLAKG 238

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            +   ++ +   L             EI  + PD   ++ +S + + + + R+       
Sbjct: 239 DDAAEAVQA---LLMSGEEPTPEACLEILSQFPDPNGRIGRSDEAYCEGKPRWKQMWSLL 295

Query: 122 STLAS-----------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           +  A            +TL+K +   YE  K     LD  DL++       +      I 
Sbjct: 296 AGEALCKLSRPFVNDLITLSKRVLKEYEALKSAAYALDNTDLLVLAFRAFDQHPE---IA 352

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            +  +    ++IDE QDT  +Q ++I  +  +             L  VGD +QSIY F 
Sbjct: 353 DQYARTFKLVMIDEFQDTDQLQIDMISHMAGEGLE---------RLCTVGDAQQSIYRFR 403

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP----ENAQG 286
           GA+     R     QKR          +EL  +FRS AD+L+ VD +F       +    
Sbjct: 404 GADVDVYRRHVERMQKR-----DDAVYVELHDNFRSHADVLSFVDCLFGRSWMFGDAFMS 458

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
           L+         R  R      +QL      Q D+             +      +  I A
Sbjct: 459 LAPGRNEAKVKRPYRSDTP-RIQLQLVEREQRDTAA-----------ERATGADACRIEA 506

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             IA   S +                  D++VL+ +  +  +   + R    D     V 
Sbjct: 507 LGIAKRFSELRRAGHPS----------SDMVVLLGRMTNADVYAQVLR----DAGFECVI 552

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
               +         ++ L +      D  +   +L S +F  S DD+ ++ T R   E +
Sbjct: 553 AGGSLFGKMPETLVVLRLLQVAADPNDAPALFEVLTSDMFALSADDLLELATDRTAKEGL 612

Query: 467 Y-----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                           +         +H ++ + ++   A   +P    T  L       
Sbjct: 613 RKRDISKGLFRLHADMEEGMPASPALRHAVEVLRDMCFRAGSDAPDRILTEALVRSGWLS 672

Query: 516 QFISR--FGNEVIDVLDEFLNFTLRNEQNSYSSL----QELISELEQYPPTIKRAHSANH 569
           +   +   G  V   + + +       Q +   +    +E+ + LE          +   
Sbjct: 673 RLQEQGAQGMAVAGNVLKAVRMAGDICQENVCGVAAAAREMAARLESCKEAPGALSAEAG 732

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH----------------------------- 600
           + VRIMT+H +KGLE P+V + D   +  S                              
Sbjct: 733 DFVRIMTIHASKGLEFPIVAVADFAKERRSSAGKFMCETIRGTTYISLMPGNSASDLEVL 792

Query: 601 -KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            K  K    +    DD  +   I  + S+  + S L  +  +  +EE  RLLYV +TRAS
Sbjct: 793 TKRAKAYASVDPEKDDVDLIGAIESAASQTELRSLLTAYGIQQEKEESQRLLYVALTRAS 852

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           + L +  H   + +      T  D+           +      +           +    
Sbjct: 853 ESLFVSMHVKRTKQPAVYIDTMSDIRAGLMAAQGNAEGDFPDQAGVPVPLEYGGSAPALF 912

Query: 720 ENTPLEREET 729
              P+ R+ +
Sbjct: 913 TRLPISRDVS 922



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 15/161 (9%)

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF----------ITSYCT-KNAK 814
             +   +     ++  + G   H L Q    +   + +                       
Sbjct: 1036 DELAADLSSDTDKATDVGSAFHALAQWSVEMANGQVEGEGHAVPLPVPDAQRIAAVMKVN 1095

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMS-CDSYSEVSVSGKINCPKK-DIIISGRIDQIS 872
               A  +  L  ++ R   +     A++  +  +E      +      ++ + G ID ++
Sbjct: 1096 GVDAASHVRLEEALLRWYGSDACARALACKNLQAEAPFFVTVPDDGGTELYLEGSIDLLA 1155

Query: 873  ISQ--QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
                    +I +YKT  H  +  E +   H+ Q + Y   L
Sbjct: 1156 SDGGFDQAYIVDYKTGGHEDETSEKLQTKHLLQATCYAYAL 1196


>gi|255534061|ref|YP_003094433.1| exodeoxyribonuclease V [Pedobacter heparinus DSM 2366]
 gi|255347045|gb|ACU06371.1| Exodeoxyribonuclease V [Pedobacter heparinus DSM 2366]
          Length = 1073

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 137/866 (15%), Positives = 262/866 (30%), Gaps = 107/866 (12%)

Query: 86   TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
               +++    L   LK  +D ++     +     F   L  L L + + +  +  +++N 
Sbjct: 293  NTSLDEVYQLLNPILKNIKDYYLTHLPNYTLAIAFSKNLYYLRLMQEVASLLKVYRQEND 352

Query: 146  VLDFEDLIINTNDLLKK-----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
             L    LI +   L+        D  ++I  K+     + L DE QDTS  QW   RSL 
Sbjct: 353  NL----LISDAQKLITGITDDAGDNPSFIWEKVGTRYRNFLFDEFQDTSTSQWNSFRSLL 408

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
             +                VGD KQSIY +   +   + R     Q +      +     L
Sbjct: 409  ANAIATPTEEFIDH--LIVGDTKQSIYRWRNGDWNILHR-----QAKFDIGAGRVLEESL 461

Query: 261  PLSFRSTADILTVVDKVFSIPEN----AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              ++RS   I+T  + ++    +          D          +      V       S
Sbjct: 462  EENYRSAEHIITFNNYIYKKIPDLLQEELNQGLDGKPEELKNWWQEQHFDRVITDIYSTS 521

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSAS-ILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  N              +++         I   IS       I     ++   A+D
Sbjct: 522  TQQFAPNTAIGGTIKLRKIGKEDAPEELRFTETIFRDISLNEIIVEIGGLKSEQGYVARD 581

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD----HLAIKDLMALGRFILSQ 431
            I +LVR   +             D  I V+  +  ++ +     L +  + AL       
Sbjct: 582  IAILVRSNTEAVTTVKKL----MDQGIDVISGEALLIANNLAVQLIVDTMKALIGLDAET 637

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
                +    L + L N S D    +        ++   +          +          
Sbjct: 638  ALYKANCIALYNSLRNVSADANHYLNLNHTSFSSLSAVLPASLCASWQSW---------- 687

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                      +    IL    G  +  +         L  F +      +     +   +
Sbjct: 688  ----MQLPLPELVE-ILMESYGLSRMEAHLP-----YLLAFRDLAGNATRLGEKGIVAFL 737

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF-SHKHIKKMHIMP 610
            +  ++           + + ++++T+H +KGL    VF+     ++      I  +    
Sbjct: 738  NWWDEEGIKKSLPSPESADAIQVITIHKSKGLAFRAVFIPFCNWEIKGKANSIFWVSAEE 797

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
            +                 N+ V+            +   +LYV  TRA D L I      
Sbjct: 798  TAFKALRGIPLKYNESLGNSAVAKAYYEELLYNHMDALNMLYVATTRARDYLYIA---TM 854

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            + +  +   T  D++  +F ND                           EN   E  + +
Sbjct: 855  AKKDPARLGTIGDVLNKTFEND-------------------------FDENNTYEIIDEV 889

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                  +K  K++        +    L  +  +   K  L    S      RG ++H +L
Sbjct: 890  PAKEAPKKKVKEIELDHYPTTSRLAELYVAEQEQHAKHMLNIQKSG----RRGSLLHDVL 945

Query: 791  QVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSY 846
              +    E      + +Y        L   KE   L  S+  +L +  +   +  +  S 
Sbjct: 946  ANVANTEE------VDNYLEGLALEGLILEKEKAELRNSVLEVLNHADLQAILNKATQSI 999

Query: 847  SEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            +E S+   I+   K      R D++ IS   + I +YK        ++     HI Q+  
Sbjct: 1000 TEKSI---IDAEGKMH----RPDRVLISADEVIILDYKF------TLQESKE-HITQVLN 1045

Query: 907  YEKILKDSYPNKSLVCLLIYVSEPKV 932
            Y+ +      +K +   L Y    ++
Sbjct: 1046 YKTLFTGMGYSK-VSGYLFYAVTKQL 1070


>gi|212704689|ref|ZP_03312817.1| hypothetical protein DESPIG_02752 [Desulfovibrio piger ATCC 29098]
 gi|212671923|gb|EEB32406.1| hypothetical protein DESPIG_02752 [Desulfovibrio piger ATCC 29098]
          Length = 713

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 121/788 (15%), Positives = 238/788 (30%), Gaps = 131/788 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G+       L +         Q +      +LS+  G          L++       +  
Sbjct: 48  GVPPESMLLLTFTRKAAQEMLQRAAALSDHALSLVQGGTFHSFAFGVLRRYRPDWLEDRP 107

Query: 66  FSLLSSFFLTQK-FTPQKNIITQEINKKSP---DLKEKLKKSQDEFIKIRD--RFNTYKM 119
           F+++ S  +       + ++   + ++  P    +   L K++++ +++ +  +   + +
Sbjct: 108 FTVMDSADINAAVKACKDDLRLGKGDRSFPRTQAIVGFLSKARNKEMRLDEVLQREAFHL 167

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                  + L       Y+  +K+  +LD++DL+     LL+  + +A     + +   H
Sbjct: 168 LPYAEPLMQLG----EAYDAYRKEKGLLDYDDLLFELEHLLRTNERAA---ENLRRRYTH 220

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           IL+DE QDT+L+Q  ++R L       +     P  + AVGDE QSIY+F GA  + +L 
Sbjct: 221 ILVDEYQDTNLVQARIVRLLAG----PEGEGMPPGNVMAVGDEAQSIYAFRGANVRNILD 276

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             ++             II L  ++RST  IL V + +      +      +        
Sbjct: 277 FPKLFP--------GARIIRLEENYRSTKPILDVANNLLENATESFRKKLFT-------- 320

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            R      V+L   +                          S    A+ +   I +++  
Sbjct: 321 -RKEGGAPVRLVTPL--------------------------SDMSQAKLVVRRIEDLLTR 353

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                          +I VL R    +  +        N   I+         T+   +K
Sbjct: 354 H-----------LPHEIAVLFRAGFHSYHLEMAL----NQAGIAFRKYGGLRYTEAAHVK 398

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           D+MA  R +L+  D  +F  + +          + K+       +         A     
Sbjct: 399 DVMAYARLLLNPLDMPAFSRVAELHE-GIGPKTVLKLYNVAQSADGPA---LDKACARFP 454

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFT 536
            F+  +++I E+         H    L L     R    SR+          L+E L   
Sbjct: 455 SFREDLRFIAEMRAR----PLHPVTALELIVDHYRPVLESRYPEDWPRRQQGLEEILQMA 510

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                         +   ++           N   + + TVH+AKGLE   V ++D    
Sbjct: 511 SGYNDLDLFLADLALDSPDE-------EDEDNEGRITLSTVHSAKGLEWNAVLIIDLVED 563

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F  +H                                     +    EE  RL+YV  T
Sbjct: 564 RFPSRHAL----------------------------------ARPEDFEEERRLMYVACT 589

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA  +L +   +   ++ +         V  S    E    +      +    ++     
Sbjct: 590 RARQELDLYSPATIYSKAEQG----TQHVAQSPFVRELPAGLTEEWVESYGGGLSKRARG 645

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
               +    R           +      +          +    ++       L      
Sbjct: 646 GMFADPFGGRPAPSGPGAGFGRGRHTGLAAPAGLSPAQRLAATRSLQDADDCQLPPDERP 705

Query: 777 NQTFNRGL 784
                 G 
Sbjct: 706 GGAAGSGR 713


>gi|254368883|ref|ZP_04984896.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121804|gb|EDO65974.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 1217

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 118/767 (15%), Positives = 234/767 (30%), Gaps = 88/767 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++RD     K  ++          +   + +AK++  VLDF+DLI      +KK    
Sbjct: 272 VKELRDLQQEIKQAQAAQFIRKACLQIRQDFAKAKEQKGVLDFDDLITKLCQSVKKSPE- 330

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT-------------------------- 200
             +   + ++    LIDE QDT   Q+E++ ++                           
Sbjct: 331 --LVKTLQKQYPVALIDEFQDTDAEQYEILDTIYPLKNSSSHSHKGRNLLTNGLNLKDTR 388

Query: 201 -EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             ++    + + S   L  +GD KQ+IY F G +    L+ K    +         +   
Sbjct: 389 LREYDSSSDQNDSNLLLLMIGDPKQAIYGFRGGDIFTYLKAKDSCPEE--------NQWS 440

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           +  ++RST +++   +++F   +      E   T I         V      ++     D
Sbjct: 441 MDTNWRSTGEMIKAYNRLFYKQDYQSEEEEQIGTNIFSDGIGYQLVKASPDADKKTKDFD 500

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
               P    +    +   +    + L+      I+ ++ T  +            DI +L
Sbjct: 501 DNFKPINYFYYEVAEDDNKSDIDTNLSLWTVNEITRLLNTQKVAE---------NDIAIL 551

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           V   K   +I    +        SV  + R  +      K+++AL   I   E+      
Sbjct: 552 VENGKQAKIIQQALQAKNLS---SVYLSQRDNVYHSQEAKEILALMEGINDLENKSMLKR 608

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            L + L          I        + ++   + A                L        
Sbjct: 609 ALSTSL--LGGRADKFISYIDENDVSAWDDEIEKA--------------KSLRQQWHKYG 652

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYP 558
              F    +     ++          I  L E +       ++    ++    +L     
Sbjct: 653 FMAFIMQTIHENFTQRADSKERIITNILHLAELIKVAENKYKHPNQLIKWYRHQLNNTAT 712

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              +    ++ N ++I+T+H +KGLE  VVF+                      +    +
Sbjct: 713 SEGELRLESDDNLIKIITIHGSKGLEYSVVFIPFACYASTKKFETSNFTKYYDGDLKQTV 772

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                           + +   K   EE  RL YV +TRA  +  I      ++EK    
Sbjct: 773 YKI--------GKDDSVKQQADKEVIEELMRLFYVAVTRAEHRCYIGVAKYNNSEKSPLA 824

Query: 679 RT-----WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           R        D +              L  +I      + +  +   +N+  +  +     
Sbjct: 825 RFLGYQKDDDWLEKIQSITANPANQSLLINIADMREFSLKNLSSKDKNSDYDILKANYIS 884

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-------KTNLESLLSDNQTFNRGLII 786
             E    + L     +            ID             L    + ++  + G I+
Sbjct: 885 KLENDSWEMLSFSKISKSKVQNTALEKEIDEAEDDKTQASDRKLAFRFTASKGADMGNIL 944

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           H +L+           N +     +  K+  A+++ NL L +   LE
Sbjct: 945 HNVLEHTDFSLGEIDCNLLQEQMDRY-KVVAAEDFDNLKLWLEECLE 990



 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 841  MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT- 899
            +      E      ++  K   ++ G ID I   +   ++ +YK+++      ++     
Sbjct: 1081 LRDTRLREYGNLTNVSNQKIFGMLHGFIDLIFEYEGKFYVADYKSNYLGDTLEDYNQQAM 1140

Query: 900  --------HIAQLSIYEKIL 911
                    +  Q  IY   L
Sbjct: 1141 QEKNQSSFYDLQYLIYSVAL 1160


>gi|330952258|gb|EGH52518.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae Cit 7]
          Length = 479

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 87/579 (15%), Positives = 183/579 (31%), Gaps = 120/579 (20%)

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L ++    A I  K   ++ ++L+DE QDT+  Q+ +++ L            +    
Sbjct: 1   VKLFQEH---ADILEKWQNKVRYLLVDEYQDTNASQYLLVKLLIG----------TRHQF 47

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ QSIY++ GA P+ ++  K               ++ L  ++RST+ IL   + 
Sbjct: 48  TVVGDDDQSIYAWRGARPENLMLLKDDYP--------SLKVVMLEQNYRSTSRILRCANV 99

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           + S   +A                        QLW ++    +                +
Sbjct: 100 LISNNPHAFEK---------------------QLWSEMGHGDEI--------------RV 124

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +  +    A R+A  I  +           +      D  +L R      LI    +  
Sbjct: 125 IRCRNEDAEAERVAMEILTLH---------LRTDRPYSDFAILYRGNYQAKLIELKLQ-- 173

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              +++    +          +KDLMA  R +++ +DD +F+ ++  P        + K+
Sbjct: 174 --HHQVPYRLSGGNSFFGRQEVKDLMAYFRLLVNPDDDNAFLRVINVPRREIGSTTLEKL 231

Query: 457 -CTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                    ++Y    +        +    + Q   +++  +        P      ++ 
Sbjct: 232 GNYATERKVSMYAATDEIGLGEHLDSRFTDRLQRFKRWMDGVRQQCAQNDPIAALRSMVM 291

Query: 510 AKKGRQQFISRFGNEVIDV---------LDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                        +E             ++   N   ++E+   +  + +   + +    
Sbjct: 292 DIDYENWLRQNSSSEKAADYRMSNVWFLIEALKNTLEKDEEGGMTIEEAIGKLVLRDMLE 351

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
            ++        V++MT+H +KGLE P VF++    ++  H                    
Sbjct: 352 RQQEEEDGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPH-------------------- 391

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                             ++  T EE  RL YVG+TRA   L     +      +     
Sbjct: 392 ---------------RSSIEADTIEEERRLAYVGITRARQTLAFTFAAKRKQYGEIIDCA 436

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               + +   +D   +    T +  K        +    
Sbjct: 437 PSRFLDELPPDDLAWEGNDDTPTEVKAVRGNTALADIRA 475


>gi|254823035|ref|ZP_05228036.1| exodeoxyribonuclease V, beta subunit [Mycobacterium intracellulare
            ATCC 13950]
          Length = 1100

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 131/1006 (13%), Positives = 263/1006 (26%), Gaps = 168/1006 (16%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             +                +  + + ++ T +       ++L  A  T         L   
Sbjct: 93   LDGTDDQRAARRQRLRDALAGFDAATIATTHQFCQLVLRSLGVAGDTAASVTLLDSLDDL 152

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS--LTLA 130
                          QE +  +    E L+ +++       +         + A+  L  A
Sbjct: 153  VTEIVDDLYLAHFGQERDDPALHYSEALRLAREVVNNPSTQLRPRDPDPDSRAAVCLRFA 212

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
              + A  +  K++  VL ++DL+    D L      A  R ++ Q    +++DE QDT  
Sbjct: 213  NDVLAELDTRKRRLGVLGYDDLLTRLADALATDGSPA--RLRMHQRWPIVMVDEFQDTDP 270

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +QW+VI              S   T+  +GD KQ+IY+F G +    LR  +        
Sbjct: 271  VQWQVIDR----------AFSGRSTVILIGDPKQAIYAFRGGDIVTYLRAAQ-------- 312

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                     L  ++RS + ++  +  V    +        +     HR  R+        
Sbjct: 313  --TAGERKTLDTNWRSDSALVARLQVVLRGAQLGDPAIVVNDVGAHHRGHRLAGAPRND- 369

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                +     +   ++       D L +   A + A      I  ++     F       
Sbjct: 370  -PFRLRVVSRKTLGRRGIQNLPIDELREHIGADLAAD-----IRALLAAGATFDG---EP 420

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +QA+DI V+V + +D                +  V      +    A +D + L      
Sbjct: 421  LQARDIAVIVERHRDAHACFKALCA----AGVPAVYTGNTDVFTSEAAEDWLCLLEAFDQ 476

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                        +  F  +   +        +                     + K + E
Sbjct: 477  PHRPGMVRAAAATMFFGETAQTLAAGGDALTD--------------------RIAKTLRE 516

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                A+       F          +    R G   +  L              +  L  L
Sbjct: 517  WAGHARERGVAAIFEAAQLLGMRDRVLGWRGGERHMTDLAHVTQLLQEVAHREHYGLPAL 576

Query: 551  ISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               L +        P   R   ++   V+IMTV  +KGL+ P+V+L       F+     
Sbjct: 577  RDWLRRQRDERGGAPERNRRLDSDAAAVQIMTVFVSKGLQYPIVYLPFA----FNRNTQD 632

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
               ++    D       +      +     + +  +K    + +RL YV +TRA  Q++ 
Sbjct: 633  SDVVLFHDEDGTR---CLHVGGKDSPDFKTVERLGRKEDASDDSRLTYVALTRAQAQVVA 689

Query: 665  CKH----------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                         S     ++       D    +  +D+                I    
Sbjct: 690  WWSPAYFEPNGGLSRLLRGRRPGDPVVPDRCEPAKVSDDDALARLREWEAAGGPVIEDSV 749

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFS------------------PIKNDINEPYI 756
                P   P      +      + I                        P    +++   
Sbjct: 750  VAPAPSLPPAPVPRHLDSRHFHRAIDTTWRRTSYSGLIRVAQASGVGSEPDVAGLDDEVG 809

Query: 757  LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
              P +    G      +         G ++H +L+                    +A   
Sbjct: 810  DIPLSSPAAGPDVPSPMADLPAGATFGSLVHAVLETADPFAADLAAELEEHIREHSAWWP 869

Query: 817  PAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKKD------- 861
             A   + L  ++  + + P+        +      D   E+     +    +        
Sbjct: 870  VAATPEELAAAMVPMHDTPLGPLADGLTLRRIGLSDRLRELDFELPLAGGDRPSVGPEVR 929

Query: 862  ------------------------------------IIISGRIDQISISQQ----NIFIF 881
                                                  ++G ID +            + 
Sbjct: 930  LADLAPLLRERLPPDDPLVSYADRLTDRALGDQSLRGYLTGSIDAVLRIPDGAGHRFVVV 989

Query: 882  EYKTH--------------HHVPQEIEHIPYTHIAQLSIYEKILKD 913
            +YKT+                       +   +  Q  +Y  +L  
Sbjct: 990  DYKTNLLGDPERPLSAADYDRPRMAEAMLHSDYPLQALLYCAVLHR 1035


>gi|255713190|ref|XP_002552877.1| KLTH0D03498p [Lachancea thermotolerans]
 gi|238934257|emb|CAR22439.1| KLTH0D03498p [Lachancea thermotolerans]
          Length = 1090

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 105/695 (15%), Positives = 197/695 (28%), Gaps = 136/695 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               Y+        LDF+DL+++   LL K              I H+L+DE QDT+ IQ
Sbjct: 195 FYEAYQCELHSQHALDFDDLLLHAFKLLSKERCLPH--------IKHVLVDEFQDTNSIQ 246

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++              ++ + + AVGD  QSIY+F  A            +  A    
Sbjct: 247 LNLMYLFAR------GNSTTSQGITAVGDPDQSIYAFRNALASN-------FEDMAAKCP 293

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              S I L  ++RS+  ILT  + +                            G      
Sbjct: 294 IPCSRIVLVENYRSSQKILTTSEMLIKQ----------------------QLSGREDRLP 331

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                         E             +  + AR +A  I  +            ++  
Sbjct: 332 LKAQFDSDFPPVYIEF-----------PAKFLEARALAREILYLRS--------LPKLWN 372

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                +LVR R+    +         +++I     +     +   I  LM L + + S  
Sbjct: 373 YNSFALLVRHRRQIRPLETSL----IEHRIPYKIVNGRAFWELKEINGLMDLLKCVYSNY 428

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY------------EYIQKFANCGISK 480
           +  + +  L+ P        + K+     + E+ +                  A   I++
Sbjct: 429 EKNAILRALQYPNRGLGPATVRKVEATFADYESPFVALKNIVANPNNGAYASKALNVITE 488

Query: 481 FQHVIKYIHELIHIAQFCSPH-DFFTLILGAKKGRQQFISRFGNEVID------------ 527
           F  +I+   EL+  A   S   + F  +      + +++   G    +            
Sbjct: 489 FLSLIESCRELMAEATDLSAMTEIFDKLYEGSGLKFEYLHVDGKRKAEVDPNGEPNLLNK 548

Query: 528 ---VLDEFLNFTLRN----------------------EQNSYSS-------LQELISELE 555
               ++                               E             L+E I+ + 
Sbjct: 549 RHINVNILRKHLANFKPFEEDLSQRQGPGDDEVDVKEEDTDVEGKINAHDILREFINSVN 608

Query: 556 QYPPTIKRAHSANHNE-------------VRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            Y    +   S    +             V I T+H AKGLE PVV +      V     
Sbjct: 609 LYSTETEVEESQMSEKERRQKKKREKDGFVTISTIHGAKGLEWPVVMIPGCVEGVIPCVF 668

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
             K     S +   G      +  +  +          + T +E  R+ +V  TRA   L
Sbjct: 669 GGKDDADDSDSATDGGEEGNNRGNNGTSSPKKNRPRRNEGTLDEERRMFFVAQTRAKFLL 728

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            +   ++   E +    T    +     N     +   T+  +  +           E+ 
Sbjct: 729 YLTATNSNDTESRYESSTPSRFLTTDLVNTMCEDQKVFTDVESVRKLYHNLNQPPPQESA 788

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
               +  +K         ++  +     + +   L
Sbjct: 789 TFSLDVLVKDYEQFVNARRERLTWKGRAVFDASRL 823


>gi|294054220|ref|YP_003547878.1| UvrD/REP helicase [Coraliomargarita akajimensis DSM 45221]
 gi|293613553|gb|ADE53708.1| UvrD/REP helicase [Coraliomargarita akajimensis DSM 45221]
          Length = 665

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 103/565 (18%), Positives = 174/565 (30%), Gaps = 121/565 (21%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                F            +   Y+  K +  V+D++DL+     LL++      +     
Sbjct: 173 EADDHFPFLDDMAQKIADIYTKYQAMKLEQQVVDYDDLLELLLKLLREHPD---VAAIYQ 229

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q   HIL+DE QDT+ +Q E++  +                + AVGD+ Q IY++ GA+ 
Sbjct: 230 QRFKHILVDEFQDTNRLQSEIVDLI-----------GVNHQIMAVGDDAQCIYTWRGADF 278

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             ++R          +   +  I ++  ++RST +IL   + V                 
Sbjct: 279 DNIMRF--------NDRHPEAQIHKIETNYRSTPEILDYANAVLGNQP------------ 318

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                   G+    +L     S       P  +              A   A+ I   IS
Sbjct: 319 -------AGKGYFKELRPVKESGAKPYFVPIMD--------------ARGQAQFIIQRIS 357

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++                 DI +L R            +   +   I           +
Sbjct: 358 ALVDEGH----------NLSDIAILYRAHYHAMD----LQMELSRQNIDYQITSGVRFFE 403

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI---- 470
              IKD  A  RF  +  D  +F     + L         +I           +      
Sbjct: 404 QAHIKDFSAQLRFASNPADVSAFARF-TTLLPKIGPKSAERIHAFTKSLAEKEQTNFCDM 462

Query: 471 -------QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG-RQQFISRFG 522
                  +K  N    ++  + + I EL +      P D   L L    G   + I    
Sbjct: 463 LTSEAVLKKVPNDAKEEWPSLAETIRELSNALSEQRPSDVVQLGLDGWYGSYIREIYPNW 522

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
            E  D L   ++F  R E       + L   +     + +R      + +R+ T+H AKG
Sbjct: 523 TEREDDLQSLISFASRYETME----ELLAQLVLLASESNERGPDELKHCLRLTTIHQAKG 578

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE P+VF++     +F  +                                         
Sbjct: 579 LEFPIVFVIGLADGLFPLQRTID-----------------------------------DG 603

Query: 643 TQEEYNRLLYVGMTRASDQLIICKH 667
             EE  RL YV +TRA D+L +   
Sbjct: 604 DLEEERRLYYVAVTRAMDELYLSYP 628


>gi|307721871|ref|YP_003893011.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
 gi|306979964|gb|ADN09999.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
          Length = 904

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 129/837 (15%), Positives = 273/837 (32%), Gaps = 199/837 (23%)

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK----NCVLDF 149
           P++   L+K QD            ++        +    L   Y++AKK        L F
Sbjct: 251 PEMDMTLQKIQDAVKA--------QIKVKEQNFFSALNELVDIYKKAKKALYIDESELSF 302

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D+ +   ++L + D S ++ +++D  I H+L+DE QDTS++Q+E+++ L ++   G+  
Sbjct: 303 SDVTLLVYEILNRLDESEFLYFRLDATIEHMLLDEFQDTSVLQYEILKPLIQEITSGEGI 362

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
            S   + F VGD KQSIY F G          +           +  + +L  ++RS  +
Sbjct: 363 CSEG-SFFFVGDVKQSIYRFRGGVSALFGEVVKE---------NRTEVKKLVTNYRSQKE 412

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           ++  V+ VF                      +  Q G V++        +          
Sbjct: 413 VIEFVNSVFINKMK---------DYTPQLVRKEAQGGYVEVIVNDELLEE---------- 453

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                              +A  +  +I                 DI +L     D   I
Sbjct: 454 -------------------LATQVKRLITLG----------ADVNDIAILCATNSDGQAI 484

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                       I VV      L +  ++K ++   +++  +ED      + K   F   
Sbjct: 485 KNALEEE----NIEVVTETTTKLINQRSVKAVLEYLKYLYFRED------IYKHNFFALI 534

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
           + D+  I        T+ + ++K  +                                  
Sbjct: 535 DKDVSPIRYVDFSGVTLVDVVKKCIDEYKLFHDDF------------------------- 569

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
                              L  FL+          + ++ L+ E E+   +   A  +  
Sbjct: 570 ------------------HLIRFLSAVANY-----ADIEALLFEYERLDTSAAAADISG- 605

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             VR++TVH +KGLE   V ++D   +  + +    +           + +     +  +
Sbjct: 606 --VRVLTVHKSKGLEYEHVIVMDRLKKAPAARDA--IIYNYDGIKLQNLYLRTKNRELID 661

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
           N  +  +   K+  +++    LYV  TRA + LII          + ++ + +D++    
Sbjct: 662 NDYAYALAKEKELMRDDSLNALYVAFTRARENLIII---------EKSKDSTFDLLDLQT 712

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
            +   ++      S+ ++       + ++   + L   E+ +Q                 
Sbjct: 713 GSFGELRSTCKAKSVPQEHKKLSFENIYYGTQSDLLALESQEQ----------------- 755

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
                                     D Q  N G+ +H  L+++    +   +       
Sbjct: 756 -------------------------EDLQAINFGIALHYTLEMMHEFTQEALQCAKNMML 790

Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID 869
            K   +    E  +++  I+RL+++           Y E ++  K N    D+++     
Sbjct: 791 NKYGFMLEESEIDDIVQRISRLVDSEEFLNLTQGTCYREKALRYKNNLRYLDLLVK---- 846

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                     + +YK+              HI Q+  Y K +++   ++++   + Y
Sbjct: 847 ---KDDGKWCVIDYKSS-------LKYTQHHIKQVRYYIKAVQEI-TDEAVEGYICY 892


>gi|320581966|gb|EFW96185.1| DNA helicase and DNA-dependent ATPase [Pichia angusta DL-1]
          Length = 775

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 113/720 (15%), Positives = 210/720 (29%), Gaps = 163/720 (22%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINK------YVSLSMETGNPTILKKAQTLQQASQTQC 61
           + NE  E +   L P P      +         V +  + G    L     +        
Sbjct: 65  AANEMVERLAVLLQPYPEIDAKKLLIGTFHSICVRILRKYGGLVGLNTGFKI------AD 118

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
             +   L+         +     +     KK        K       ++        +  
Sbjct: 119 ETDAKQLIKKVLRAMAESGFDVSLKDSDVKKYRAYISACKNKAQLPDQVPLSKKAGDVST 178

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              A           Y+E   +N V+DF+D ++  + LL                + H+L
Sbjct: 179 KLEA--------YTLYQEELLRNNVIDFDDCLLLVHKLLAHHPSCM-------GRVKHVL 223

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ +Q E++  L+          +    + AVGD  QSIY+F  AE +   R +
Sbjct: 224 VDEFQDTNKVQLELVYQLSG------FNENFKHNVTAVGDPDQSIYAFRNAEAENFYRME 277

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
              +++    G   S + L  ++RST++ILT+ + + +     +                
Sbjct: 278 DYYREK----GVAVSKVALTQNYRSTSNILTLAEHLMNKQFARREQKYLHAHKKDDIPV- 332

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                                             +   ++    A RIA TI  ++    
Sbjct: 333 ---------------------------------QMIACATNKAEASRIAATIKQVV---- 355

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                K    Q  DI +L+R    + +I            +           +   I+ +
Sbjct: 356 -----KPNGKQYSDIAILLRSGFLSRVIEQEL----IHANLPYEVVHGRSFWERREIRLV 406

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI------CTQRHETETVYEY------ 469
           M   R + S  D L +   L   +       +  I         +++   VYE       
Sbjct: 407 MDYLRAVASDMDWLGYSRCLDFQVSGLGAKSLLLIEERFSAQRAQNQPGNVYEILESIVR 466

Query: 470 --IQKFANCGISKFQHVIKYIHELIHIA-----QFCSPHDFFTLILGAK-------KGRQ 515
             ++       +     +  I +   +      +       F  I+          + R 
Sbjct: 467 DGMKGITAKARAGIGEFVALIKKARELLLSDATEQEQLEKMFDYIVQHSRVVSVVNEERM 526

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYS-------------------------SLQEL 550
                   E+   L+E  N  +                                 SL++L
Sbjct: 527 DRKGDTQEEIEANLNELKNQLISFNLQEEDLLQDAYAEEDEVEVIDLSFDLTVSTSLEKL 586

Query: 551 ISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
              L+        +      ++V I TVH +KGLE P+VF+      +F  +H       
Sbjct: 587 AQFLDSVYLYEETKGAEKTVSKVTITTVHGSKGLEWPIVFVPSLCEGIFPSQHATNDVGD 646

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
            +                             ++  +E  R +YV +TRA +QL +     
Sbjct: 647 TT---------------------------KNEAALDEERRCMYVAVTRAKEQLYLSYFKE 679


>gi|32491015|ref|NP_871269.1| hypothetical protein WGLp266 [Wigglesworthia glossinidia endosymbiont
            of Glossina brevipalpis]
 gi|25166221|dbj|BAC24412.1| recB [Wigglesworthia glossinidia endosymbiont of Glossina
            brevipalpis]
          Length = 1162

 Score =  209 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 135/862 (15%), Positives = 260/862 (30%), Gaps = 143/862 (16%)

Query: 134  NAHYEE-AKKKNCVLDFEDLIINT-NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
               Y++  KK    LDF+DLII    +L K   +S  IR          +IDE QDT LI
Sbjct: 326  MREYKKTEKKNQEKLDFDDLIILFKTELFKFNKLSKIIR----NIYPVAIIDEFQDTDLI 381

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q+++   +               +L  +GD KQ+IY F GA+                  
Sbjct: 382  QYKIFFKIY--------YKKKMCSLILIGDPKQAIYGFRGADIF----------TYIKIK 423

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
             +  +I  L  ++RS+  ++  V+ +FS  +N       +                ++  
Sbjct: 424  NKIKNIYSLQTNWRSSVRMVNAVNFLFSRIKNPFIYKNINFDKALSIKKNNNLNFFIE-- 481

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNG 366
                    ++     E      +++   +    +A + A  I N+I +       + +  
Sbjct: 482  --------NKLQSAIEFVMYPKNNIGLHNYQKYMAEQYAIKIYNIINSSDYKKTYLENKY 533

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALG 425
              + +   DI +LVR R +   +    +   +   I  +  +D   +   L  KD++ + 
Sbjct: 534  SHKNVIISDITILVRNRTEANFM----KIACDKLSIPNIYLSDNSSVFHTLEAKDIIQIL 589

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
              IL  E++    C L + +F  +  +I K+   +                    F+ +I
Sbjct: 590  NAILFPENENIVRCALLTKMFGLTNVEIQKLNYNKKI------------------FKKII 631

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE---- 540
                    +            IL  K     F   +   +    +   +           
Sbjct: 632  LEFILYRDLWDKFGIMQMMNYILDNKNYFTMFNKFKKDIKYFSNIIHIVEILHETSKKIK 691

Query: 541  --QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                    L   I+  +      K         V+IMT+  +KGL+ P+VFL    S   
Sbjct: 692  NKHELLKWLYYQITFNDVQNENHKIRVFDEDKAVKIMTIFKSKGLQFPIVFLPFLSSFRT 751

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                +        L  D    +                K   K    E  RL YV +TRA
Sbjct: 752  KKHVLFHSKKKYKLILDLKSTLKN-------------RKLSDKERLSEDIRLFYVAITRA 798

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                 I   S +   +  +  +        +   +R K    T     +    Y      
Sbjct: 799  IYHCSIGICSLSIGNQTKSVMSHTHRTSIGYIIQKRKKSDWNTLKKYLENISFYSKGNIS 858

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY---------------ILNPSTID 763
                    ++ +K       I K + S  K D                     +     +
Sbjct: 859  VNLKKNLCKKILKTNFSFFNIKKNIISNKKEDYFFKSISFSYIKKNNFNKLNYIYEHEKE 918

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
             K K    +     +    G  IHK+ + +       +     +        +      +
Sbjct: 919  NKEKIYDFNTSFLPKGKIFGKFIHKIFEKLNFTKNIDKNIIKENLVKYE---FDLSLTND 975

Query: 824  LLLSITRLLENPM------MTTAMSCDSYSEVSV---------SGKINCPKKDI------ 862
            L   I  +++ P+      ++     +  +E+             + N   K        
Sbjct: 976  LAEWIKNIIKKPLNEDFLSLSRIKQKNKLTELKFYLSINSKIKEKEFNFLIKKYDPISSK 1035

Query: 863  ------------IISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHI 901
                        I++G +D + + ++  +  +YK++               +E I + + 
Sbjct: 1036 CFCLKNINNINGILTGSVDLVFLWKKKYYFLDYKSNWLGENSSFYNKKNMTLEMIKHRYD 1095

Query: 902  AQLSIYEKILKDSYPNKSLVCL 923
             Q  IY   +   Y    +   
Sbjct: 1096 IQYQIYSVAIHR-YLKYKIKKY 1116


>gi|239944122|ref|ZP_04696059.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239990574|ref|ZP_04711238.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 1191

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 123/837 (14%), Positives = 234/837 (27%), Gaps = 130/837 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLS 70
           +    +     L       I    S  +          A+ L++A          FS L 
Sbjct: 108 TISTYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLREAPGPYPALTRSFSTLV 167

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S  L       ++++     +      E L++     +   D     +  ++  + L L 
Sbjct: 168 SDLLALDGELSEHLVRPGTLEAYDT--ELLRELAAAKLSNADLRKIPEAAEARRSLLGLT 225

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                 Y  AK+   +LDF D I  + +L L + +V   +R +       +L+DE QDTS
Sbjct: 226 ----ERYRTAKRSRDLLDFGDQIALSAELALTRPEVGRILREE----FRVVLLDEYQDTS 277

Query: 190 LIQWEVIRSLTEDFFVGK-------NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           + Q  ++ +L      G        +  ++   + AVGD  Q+IY + GA    +     
Sbjct: 278 VAQRLLLSALFGSGGTGSGGSSGGTDPGAAGHAVTAVGDPCQAIYGWRGASVANLDDFPE 337

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                    G   +   L  + RS   +L + + +                       R 
Sbjct: 338 HFP---HADGTPATRYSLSENRRSGGRLLQLANGL-------------------AEPLRA 375

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              G   L              +++                 LA  +A+ +         
Sbjct: 376 MHEGVEALRPA--------PGAERDGMVRCALLSTHTEEIDWLADSLAHLVRT------- 420

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                       +I VL R   D P I            I V       L     + DL+
Sbjct: 421 -------GTPPGEIAVLCRTAGDFPEIQAALVA----RDIPVEVVGLAGLLHLPEVADLV 469

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--------------------- 461
           A+   +     + S V +L  P +     D+  +  +                       
Sbjct: 470 AVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRAGRADDADADRRLAEA 529

Query: 462 -------ETETVYEY-------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
                  E  ++ +                 F+     +F  + + + +L   +      
Sbjct: 530 VEGTDPAEVISLADALDTFLVAGDAADDGLPFSAEARVRFARLARELRDLR-RSLADPLM 588

Query: 502 DFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQY 557
           D    IL       +  +          + L  FL+   R    +  +SL   +  L   
Sbjct: 589 DVLHRILATTGLEVELSASPQALAARRRETLANFLDIAARFASFDGEASLLAFLGFLRTA 648

Query: 558 PPTI---KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IM 609
                    A     N V+++T H +KGLE  VV +    +  F     +        ++
Sbjct: 649 AQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGQFPSGQSRDAWTAQAKVL 708

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK-HS 668
           P         +    S     I     + +K+    E  RL YV  TR    L+      
Sbjct: 709 PHALRGDAATLPALDSFDAKGI-KAFKEEMKEHQHTEELRLGYVTFTRPRSLLLGSGHWW 767

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
             S ++      + + +Y+         +         +E  A                +
Sbjct: 768 GPSQKRTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEENPALAERDADLAWPLPLDAD 827

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILN-------PSTIDTKGKTNLESLLSDNQ 778
            + +    +         +    +EP           P+      +  L+   +D  
Sbjct: 828 ALARRRAARDTVLAHLERMAVQGDEPEPAYGPGPDDVPAHEPWDEEPPLDEPPADED 884



 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/452 (9%), Positives = 102/452 (22%), Gaps = 55/452 (12%)

Query: 510  AKKGRQQFISRFGNEVIDVLDEFLNFTLR-NEQNSYSSLQELISELEQYPPTIKRAHSAN 568
              +G   F+            E   +     E     +L E  ++L    P    A +  
Sbjct: 773  RTRGPSAFLEALYEHCAAGHGEIEAWADEPAEDEENPALAERDADLAWPLPLDADALARR 832

Query: 569  HNEVRIMTVH----TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  +  H      +G E    +              ++  +     D+      +P 
Sbjct: 833  RAARDTVLAHLERMAVQGDEPEPAYGPGPDDVPAHEPWDEEPPLDEPPADEDWDWDALPT 892

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
             +    +     + +++                                  +++ T +  
Sbjct: 893  ERPAEPVPDMAPEPVRERAPAPE-----------------AAPHTEPAPDPASEPTPHIP 935

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                   D   +    T             +    +      +    +L   +   +++ 
Sbjct: 936  AARHPQEDPAARHAPETTDPADRLTPEEARTLASWDRDL---DSLAGELRRARATVREVV 992

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
             P      +   L         +              RG   H  ++             
Sbjct: 993  IPAALSATQLLRLAEDPDAFAQELARPMPRPPQPAARRGTRFHAWVES------------ 1040

Query: 805  ITSYCTKNAKLWPAKEY---KNLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINCP 858
               Y      +    E          I    +   +  A    +Y+      V       
Sbjct: 1041 --RYEELPLPMLGPDELPGGDESDAEIADERDLAELKEAFERTAYARRTPYRVETPFQIT 1098

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--P 916
                +I GRID +  +     I ++KT  H   +          QL++Y     + +  P
Sbjct: 1099 LAGRVIRGRIDAVYRTGDTYEIVDWKTTRHRTADP--------LQLAVYRLAWAELHDLP 1150

Query: 917  NKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
              ++    +YV   +               I 
Sbjct: 1151 LDAVTATFLYVRTGETVHPQGLPGRADLERIL 1182


>gi|307266291|ref|ZP_07547831.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918669|gb|EFN48903.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 440

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 113/322 (35%), Gaps = 69/322 (21%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  LDF+D+II T +L K+      +     ++  +I++DE QDT++ Q+  +  L + +
Sbjct: 183 NNALDFDDIIIKTIELFKESPE---VLDFYQRKFKYIMVDEYQDTNMPQYHFVNMLAQKY 239

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     R L  VGD+ QSIY + GA+ K +L  ++           +  +I+L  +
Sbjct: 240 ----------RNLCVVGDDDQSIYGWRGADVKNILNFEKDYP--------EAKVIKLEQN 281

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  IL   + V       +  +                     LW        +   
Sbjct: 282 YRSTKTILEAANHVIDNNIRRKKKT---------------------LW-------TNNEE 313

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++       +   +          +   I N+   +             +D  +L R  
Sbjct: 314 GERIILCELENEREEAE-------FVIQEIINLKERENR---------SFRDFAILYRTN 357

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +              +I           D   IKD++A  R +++  DD+SF  ++  
Sbjct: 358 AQSRAFEEAL----MRVRIPYKVVGALRFYDRKEIKDIIAYLRILVNPYDDISFKRIINV 413

Query: 444 PLFNFSEDDIFKICTQRHETET 465
           P        I  +     E +T
Sbjct: 414 PKRGIGAATIEALEATALEKDT 435


>gi|319941481|ref|ZP_08015809.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis
            3_1_45B]
 gi|319805101|gb|EFW01931.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis
            3_1_45B]
          Length = 1191

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 133/1020 (13%), Positives = 283/1020 (27%), Gaps = 166/1020 (16%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQ-----------ASQTQCIE 63
             ++ +    P   VS + + ++     G  TI    Q + +               + ++
Sbjct: 157  ALWAEQGRDPAVIVSRLRESLAQFDNAGIFTIHGFCQKVLEDRAFTSGSSIGFELVENVD 216

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--FNTYKMFK 121
            +    + + F+            +          E LK+       +      +  +  +
Sbjct: 217  DLVEEVVNEFIRTSLLQLSEREDRAAISDPEKWIEILKQLMAAPEDLVPSTIVSLPESPE 276

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV-------SAWIRYKID 174
               A     K       + K +  V  F+DL+I   + L+           +  +   I 
Sbjct: 277  LAAAFQNFVKEAPKRLAQKKCEARVKTFDDLLIELYERLRGDPADAESRAQAQRLAESIR 336

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
               + +L+DE QDT  IQ+ VI+ L             P  ++ VGD KQ+IY F GA+ 
Sbjct: 337  SAFSVVLVDEFQDTDPIQYAVIKRLFL-------RKREPHPVWFVGDPKQAIYRFRGADL 389

Query: 235  KRVLREKRINQKRA--TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            +  LR +R  +       +G+   +  L  ++RS+ D++   +  +    N     + + 
Sbjct: 390  ETYLRARRDVEALYQTAGSGRFRGVYALTTNYRSSPDLVRAFNAFWRTAPNPFLREDLAY 449

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR---I 349
              ++             L         +  +     W S +   P +++A    ++   +
Sbjct: 450  LEVKSSPKN--------LPLMQKRPDGAIMDAVPFEWVSSWQETPAQTAAERRQQQGIVL 501

Query: 350  AYTISNMIGTDTIF------------------SNGKKRVIQAKDILVLVRKRKDTPLITF 391
               I+ MI                           + R +   DI VLVR   +      
Sbjct: 502  TDRITAMIEAGRRGELLVPCADEEASLAVAEKDGKRLRGVLPGDIAVLVRTHDEGLTAAE 561

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
            + +       + V       + + +   ++  +     +  D         + L      
Sbjct: 562  VLK----HRGVRVQIRCDQNVCNTIEACEIGMILSAFAAPGDLKLLRAARTTRLIGDDLA 617

Query: 452  DIFKICTQRHETETVYEYIQKFANCGIS-KFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             +            +    +  A    +      ++ +      A           +L  
Sbjct: 618  CLDDQERDETRRIALRGEFEYGARNWGTVGPAAALERLMTFCRTA---------ERLLPQ 668

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-----H 565
              G +   +         L E L+   R       +   L + L                
Sbjct: 669  ANGERTLTN------YRHLLELLHGAARI----IPTPAGLAAWLAAEAKRPVSDFNRERL 718

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             ++ N V + T+H++KGL+ P+VFL  T S                            ++
Sbjct: 719  ESDANLVLVETIHSSKGLQYPIVFLPYTQSGSIGTHARCTSRTDDPKRSAQRCLEVRFEA 778

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK------HSNTSNEKKSNQR 679
            +  +       + + ++  EE  R++YV MTRA+  L I          N      S  +
Sbjct: 779  EKPD-------QRVNQAEYEEKVRVMYVAMTRAARHLCIIGEQRIKSAVNPDQWHSSTAQ 831

Query: 680  TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                          R   +     +   +  +        E            L      
Sbjct: 832  AHLFRALTGQLTPSRADILPAVERLAGLQSSSGTPLFRFTELGAAAAGAQSSLLTQGTVG 891

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL----------------LSDNQTFNRG 783
                 +  +   +E    + + I    + +                    LS  +    G
Sbjct: 892  ESYTTAQSQTRRSEWRTSSFTGITRMAEDDGPGFSTWYGQAEKPPLVDDILSFPKGAQAG 951

Query: 784  LIIHKLLQVIFT--LPEHKRKNFITSY---CTKNAKLWPAKEYKNLLL------SITRLL 832
              +H++++      +     K           +  K     E +           I  LL
Sbjct: 952  TCLHEMMERADFSLMASDDEKAAAARLALTVREVEKHLSLPEKEAASAAAGAAAMIRDLL 1011

Query: 833  ENP-----MMTTAMSCDSYSEVSVSGKINC-------------------------PKKDI 862
                     +         +E+     I+                               
Sbjct: 1012 NAEVAPGVTLKDVPKSARSAELEFLIPISASLTAERLVSELKAMDPKYDFGTLRPEDLKG 1071

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
             ++G ID    +    ++ ++K++   P+           E   + +  Q  IY   L+ 
Sbjct: 1072 FLTGFIDLAFSAGGRFYVLDWKSNKISPEASGYTEKAMSAEMDVHLYRLQYLIYWVALRR 1131


>gi|182436134|ref|YP_001823853.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464650|dbj|BAG19170.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 1162

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 122/837 (14%), Positives = 225/837 (26%), Gaps = 128/837 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLS 70
           +    +     L       I    S  +          A+ L++A          FS L 
Sbjct: 108 TISTYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLREAPGPYPALTRSFSTLV 167

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S  L       ++++     +      E L+      +   D     +  ++  + L L 
Sbjct: 168 SDLLALDGELSEHLVRPGTLETYDT--ELLRDLATARLSNADLRKIPEAAEARRSLLGLT 225

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                 Y  AK+   +LDF D I  + +L L + +V   +R +       +L+DE QDTS
Sbjct: 226 ----ERYRAAKRSRDLLDFGDQIALSAELALTRPEVGRILREE----FRVVLLDEYQDTS 277

Query: 190 LIQWEVIRSLTEDFFVGK------------NTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
           + Q  ++ +L                        +   + AVGD  Q+IY + GA    +
Sbjct: 278 VAQRLLLSALFGAGTAPGEDGQAPTGHPPPGQAPTGHAVTAVGDPCQAIYGWRGASVANL 337

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                         G   +   L  + RS   +L + + +                    
Sbjct: 338 DDFPEHFP---HADGTPATRYSLSENRRSGGRLLQLANGL-------------------A 375

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
              R    G   L              +++               + LA  +A+ +    
Sbjct: 376 EPLRAMHEGVEALRPA--------PGAERDGMVRCALLRTHTEEIAWLADSLAHLVRT-- 425

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                            +I VL R   D P I            I V       L     
Sbjct: 426 ------------GTPPGEIAVLCRTAGDFPEIQAALVA----RDIPVEVVGLAGLLHLPE 469

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------------- 461
           + DL+A+   +     + S V +L  P +     D+  +  +                  
Sbjct: 470 VADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRAGHADDADADQ 529

Query: 462 ------------ETETVYEY-------------IQKFANCGISKFQHVIKYIHELIHIAQ 496
                       E  ++ +                 F+     +F  + + + +L   + 
Sbjct: 530 RLADAVEGTDPAEVISLADALDTFLVVADAADDGLPFSAEARVRFARLARELRDLR-RSL 588

Query: 497 FCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELIS 552
                D    +L       +  +          + L  FL+   R    +  +SL   + 
Sbjct: 589 ADPLMDVLHRVLATTGLEVELSASPQALAARRRETLANFLDIAARFASLDGEASLLAFLG 648

Query: 553 ELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-- 607
            L            A     N V+++T H +KGLE  VV      +  F     ++    
Sbjct: 649 FLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAAPGLVTGQFPSDRGREAWIA 708

Query: 608 -----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                      D   +P   P        V      +K+    E  RL YV  TR    L
Sbjct: 709 QPQVLPHALRGDAATLPALDPHDGLDAKAVKAFKAEMKEHQHTEELRLGYVTFTRPRSLL 768

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
           +   H    ++K++   + +             +     +   +DE              
Sbjct: 769 LGSGHWWGPSQKRTRGPSAFLEALYEHCAAGHGEIEAWVDEPAEDEENPALAERDADLAW 828

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
           PL  +          +                Y   P+ +        E    +   
Sbjct: 829 PLPLDADALARRRAARDTVLAHLERMAAGEPSYGPAPADVPADEPLFEEEPFKEEPA 885



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/291 (9%), Positives = 64/291 (21%), Gaps = 36/291 (12%)

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              +  ++          D          R  +          E      S         +
Sbjct: 891  WDALPTDRPPGPPEAEPDTDPVPHIPAARHPREDPAAGRLTPEEARTLASWDR------D 944

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
             +    +L   +   +++  P      +   L         +              RG  
Sbjct: 945  LDSLAGELRRARASVREVLVPAALSATQLLRLAEDPDAFARELARPMPRPPQPAARRGTR 1004

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
             H  ++                Y      +    E      +   + +   +        
Sbjct: 1005 FHAWVES--------------RYEELPLPMLGPDELPGGDENDAEIADERDLAELKEAFE 1050

Query: 846  YSEVS------VSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
             +  +      V           +I GRID +  +     I ++KT  H   +       
Sbjct: 1051 RTPYARRTPYRVETPFQITLAGRVIRGRIDAVYRTGDRYEIVDWKTTRHRTADP------ 1104

Query: 900  HIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
               QL++Y     + +  P   +    +YV   +               I 
Sbjct: 1105 --LQLAVYRLAWAELHGLPLDEVSATFLYVRSGETVRPRDLPGRAELERIL 1153


>gi|302670855|ref|YP_003830815.1| UvrD/REP family ATP-dependent DNA helicase [Butyrivibrio
           proteoclasticus B316]
 gi|302395328|gb|ADL34233.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 638

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 94/605 (15%), Positives = 187/605 (30%), Gaps = 122/605 (20%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
            ++S D  E +     E  +I++           +      + +   Y     +  ++DF
Sbjct: 134 KQESLDAIEMIGDIISEISRIKNTGAKAGEHLQNIPFSNYFEEIFREYNSLLTEFGMVDF 193

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +D+I+   +LLK+      +     +   ++LIDE QD +L+Q++V+R L          
Sbjct: 194 DDMILKCYELLKRD---KRLLDTWSRRFEYVLIDEYQDINLMQYKVVRLLCA-------- 242

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 LF VGD+ QSIY F G++P  + +     +      G    II L +++R    
Sbjct: 243 ---TNNLFVVGDDDQSIYGFRGSDPGIMQKFTAEFE------GLDPKIINLNVNYRCAKR 293

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   + +    +     +                                      + +
Sbjct: 294 ILYASNMLIKDNKIRLNKALMPN------------------------------EGSPDGF 323

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                 + +   ++ + R ++  +  +                   I  + R   +    
Sbjct: 324 VYPRRYIDKRQQSAAIIRFLSDNMDKL-----------------DSIAFIFRTNSEA--- 363

Query: 390 TFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                 L   Y I    +D      +   ++      +F+   +    F+ ++ +P    
Sbjct: 364 -LALADLCKQYGIPTNLDDHAVSFVEAQGVRLCENYLKFVYEGKKREYFLKIMNNPNRYI 422

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           S + +          +T+ E        G       I+ +   +++     P      + 
Sbjct: 423 SRNAL--------SNDTLCEADLIKYYRGNYDRIKEIEKLFRQLNMLGHMRPSLSIRFLR 474

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                 + F           LDE    +++   N    L+EL    E      K      
Sbjct: 475 KEVGIDKMFPKDM-----AALDELSELSVKIADNKTF-LKELDKIRENSIGEKKAKSGNK 528

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V++MT+H +KGLE  +V+L      +                               
Sbjct: 529 GKCVKLMTMHGSKGLEFDIVWLPGLNEGIIPS---------------------------- 560

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                     +     EE  R+LYVGMTRA   LI+  +   + E       +   +   
Sbjct: 561 -------RSCVTNEQIEEERRMLYVGMTRAKSALIMS-YLTGNKENPMMPTRFLRPIRHL 612

Query: 689 FHNDE 693
           +  D 
Sbjct: 613 WEGDH 617


>gi|50311389|ref|XP_455719.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644855|emb|CAG98427.1| KLLA0F14234p [Kluyveromyces lactis]
          Length = 1064

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 112/711 (15%), Positives = 210/711 (29%), Gaps = 142/711 (19%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
           L  E G     +K +           E+  S+L    +      +    T+    +    
Sbjct: 104 LLKEKGFLIGKEKIER-------ATTEKIKSILEELIVEMPDQIRDYACTKSYKNEVSLC 156

Query: 97  KEKLKKSQ-------DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           + K  + Q           +++    T + ++          +    Y+    K  ++DF
Sbjct: 157 RLKNNQWQVHPDMILKRISELKADAITPEKYEQQAIFDEALLHFYQQYQAKLSKEHLIDF 216

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +D+++ + +LL K         ++ + I H+L+DE QDT+L+Q  +I      F   + +
Sbjct: 217 DDVMLYSFELLSKH--------RVWKNIKHVLVDEFQDTNLLQIHLI------FQFARGS 262

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
           H S   +  VGD  Q IY F  A            Q        ++  I L  ++RS   
Sbjct: 263 HHSCEGVTVVGDPDQGIYGFRSA-------LSHNFQTMIELCPIEYDQIVLKENYRSAQA 315

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL + + V    ++ +    D+   +R +     +   +                     
Sbjct: 316 ILDISETVIKQQKSGR----DNREPLRAQFVTDNKPVYMSF------------------- 352

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                      S    A  I   I  +             + + KD  +LVR ++     
Sbjct: 353 ----------PSDDTEAYTITKEILYL--------KAIPGLFKYKDFAILVRLKRSLRTF 394

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                  K    I  V    +   +    K ++     I + +D  S    +  P     
Sbjct: 395 ENALIAHK----IPYVIQKGYTFWELKECKAIIRYMSMICNDDDWESLKRTINYPNRGVG 450

Query: 450 EDDIFKICTQ------RHETETVYEYIQKFAN----------------CGISKFQHVIKY 487
           E  + KI           + ET + ++QK A                   ++  + V K+
Sbjct: 451 ETTVGKIAAAFEKESTAEKNETAFSFLQKIARDSVKINISNSSMIGIKDYVNIIEQVRKF 510

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG------------NEVIDVLDEF--L 533
             E+   A   +  D F         R Q+                  E    L+     
Sbjct: 511 FSEIYSDAGKSTIADAFEKFYVLTGLRGQYKPEKKSGSIASDDQSTEKEAHRHLNVLNVK 570

Query: 534 NFTLRN-----EQNSYS---SLQELISE---------LEQYPPTIKRAHSANHNEVRIMT 576
           N+         + +       L     E           +      +      + V + T
Sbjct: 571 NYFSTFKIPLGDGDGEPRIVDLIGFCHEFVSFTDLYTFNEDNDNDVKDDHETKDAVVLST 630

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE PVVF+      +    +     +     D               +   D  
Sbjct: 631 IHASKGLEWPVVFVPQCVEGLLPSYYKDSSDMPAPDEDSDENMAVGDAYNEPTDSQDDNR 690

Query: 637 K---------HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                        +++  E  R+ +V +TRA   L I      +   KS  
Sbjct: 691 DGKNPSSPTKKKSRTSFSEERRMFFVALTRAKYLLYITTVEKEATSFKSRF 741


>gi|325108966|ref|YP_004270034.1| UvrD/REP helicase [Planctomyces brasiliensis DSM 5305]
 gi|324969234|gb|ADY60012.1| UvrD/REP helicase [Planctomyces brasiliensis DSM 5305]
          Length = 665

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 115/721 (15%), Positives = 228/721 (31%), Gaps = 143/721 (19%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQ---TQCIEERFSLLSSFFLTQKFTP---Q 81
            +       LS+   N    + AQ LQ       T+     F  L    L Q+      +
Sbjct: 48  GTGTQADRILSVTFTNKAAKEMAQRLQAILGRRKTKPWISTFHALCVRILRQEIEALGYR 107

Query: 82  KNIITQEINKKSPDLKEKLKKSQDE--------FIKIRDRFNTYKMFKSTLASLT----- 128
                 +   +    ++ L+  + +         + I  R+ +  +  +           
Sbjct: 108 STFTIVDRGDQESLARDVLRSIRVQESSLKPGDLLAIVSRWKSAGVAPANAQDYAVDDKE 167

Query: 129 -LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            LA      Y +  +    +DF+DL++ T+ L ++   +     +     +++ IDE QD
Sbjct: 168 FLAALAYRKYCDRMRARNSVDFDDLLLLTDQLFQEHPEA---LQRQQDRFDYVQIDEYQD 224

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q+ ++++L              + L  VGD+ QSIY++ GAE K +L  +      
Sbjct: 225 TNQLQFRLVQALVA----------PHQNLCVVGDDDQSIYAWRGAEVKHILSFQNHFPA- 273

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++ L  ++R T  IL V +++ S   +       S                
Sbjct: 274 -------AKVVRLEDNYRCTDSILDVANRLVSFNRDRHHKVLRSNKQSVEPVRYEKFPDE 326

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V                                     A RI   IS ++          
Sbjct: 327 VT-----------------------------------EAERIVLEISYLVSQ-------- 343

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            R  +  D  +L R  +         R      +I  V        D   I+DLMA  R 
Sbjct: 344 -RNKEPGDFAILFRTNEQPRAFESELR----RRQIPYVILGSQSFFDRKEIRDLMAYMRV 398

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQ------KFANCGISK 480
           +    D+ + + ++ +P        + K +     E    +   +      + +    + 
Sbjct: 399 LAEPNDESALLRIINTPSRGIGSSSVEKVLQRAVREGIPFFAAARKVAADGELSGKASAA 458

Query: 481 FQHVIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFISRFGNE------VIDVLDEF 532
            Q     + +          +  D    ++   K + +   R  NE       ++ +++ 
Sbjct: 459 IQRFEARVTQWRTEMNQPGRTFADQLRKLMEDTKYKHEI-DRLYNEPAQKQARLESIEQL 517

Query: 533 LNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPV 587
           L+      + +   +L E + E+                   N V+++T+H+AKGLE P 
Sbjct: 518 LDALDDYSRRTAKPNLHEFLDEVALNDKDDFATDDKAKELQKNAVKLLTIHSAKGLEFPR 577

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V+LV     +  HK                                       +   EE 
Sbjct: 578 VYLVGLEEGLLPHKRAV---------------------------------EGTRKDIEEE 604

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YVG+TRA + L +   +      K  +      +++   + +  K +       + 
Sbjct: 605 RRLTYVGVTRAQESLTMTFAATRRKWGKPRKTIPSRFLFEMRTDRQNEKGLDPEEEPAES 664

Query: 708 E 708
           +
Sbjct: 665 Q 665


>gi|291454013|ref|ZP_06593403.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291356962|gb|EFE83864.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1201

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 106/817 (12%), Positives = 214/817 (26%), Gaps = 120/817 (14%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFF 73
             +     L       +    S  +          A+ L++A          F  L    
Sbjct: 128 TYHAFAGRLLTDHGLRLGLEPSTRLLADATRFQLAARVLREAPGAHPALTRSFPDLVGDL 187

Query: 74  LTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           L       ++++T + +     DL   L+ +      +R      +        +     
Sbjct: 188 LALDGELSEHLVTPDRLRHHDEDLLGTLESTPLTNPDLRKLPEVARARHDLAGLV----- 242

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               Y  AK+   ++DF D I  +  L  +      +   + +E   +L+DE QDTS+ Q
Sbjct: 243 --EQYRSAKRDRDLIDFGDQIALSATLADRHPA---VGALLREEFRVVLLDEYQDTSVAQ 297

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++  L          H +   + AVGD  Q+IY + GA    +              G
Sbjct: 298 RILLAGLFG--------HGTGHPVTAVGDPCQAIYGWRGASVANLDDFPDHFP---HADG 346

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              +   L  + RS   +L + + + +                     R    G   L  
Sbjct: 347 TPAARHSLSENRRSGGRLLDLANTMAA-------------------PLRAMHTGVEALRP 387

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                          +            + +     +A  I++++ T T           
Sbjct: 388 ------------APGAERDGIVRCALLDTHADELTWLADRIAHLVATGTP---------- 425

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +I VL R   D        +    D  + V       L     + DL+A+   +    
Sbjct: 426 PGEIAVLCRTAGDFG----AIQSALVDRDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPG 481

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQR------------HETETVYEYIQKFANCGISK 480
            + S V +L  P +     D+  +  +                  + E ++      +  
Sbjct: 482 ANASLVRLLTGPRWRIGPRDLALLGRRARLLVRRERAGGDDPDRRLAEAVEGVDPAEVIS 541

Query: 481 FQHVIKY--------------------------IHELIHIAQFCSPHDFFTLILGAKKGR 514
               +                            + +L   +      D    +L      
Sbjct: 542 LADALDTFLDGSADDELPFSAEARVRYAQLATELRDLR-RSLADPLMDVLHRVLATTGLE 600

Query: 515 QQFISR---FGNEVIDVLDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI---KRAHSA 567
            +  S          + L  FL+           +SL   +  L            A   
Sbjct: 601 VELSSSPQALAARRRETLSNFLDVAASFAAQEKDASLLAFLGFLRTAAQYEKGLDNALPG 660

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWI 622
             N V+++T H +KGLE  VV +    ++ F  +  ++       ++P         +  
Sbjct: 661 GENTVKVLTAHKSKGLEWDVVAVPGLVAKQFPSEQGREKWTAQPRVLPHSLRGDAATLPD 720

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             +   +  +    + ++     E  RL YV  TR    L+   H     +K++   + +
Sbjct: 721 AGA-LDSKGLKAFTEQMRDHQHTEELRLGYVTFTRPRKLLLGSGHWWGPTQKRTRGPSDF 779

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            +           +        +                 PL  +E             +
Sbjct: 780 LLALHDHCLAGHGETEVWAERPDAAAQNPALAEPTADLAWPLPLDEVALDRRRAAAATVR 839

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                                            +   
Sbjct: 840 AHLDALASGALATSAIEEQAAPDAAVPAHPAPGEPDG 876



 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 63/278 (22%), Gaps = 48/278 (17%)

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            D    +                      A  +S      TP E         D + +  +
Sbjct: 895  DWESWTTARPATTPPPVAVTEAVTPATPAATYSAATEGPTPEEARLIHSWDQDLEALSGE 954

Query: 743  LFS----------PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
            L            P     +E   L         +              RG   H  ++ 
Sbjct: 955  LLRARQGTRDVVLPASLTASELMRLAADPAGFAAELARPMPRPPQPAARRGTRFHAWVES 1014

Query: 793  IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEV 849
                           +      +   +E       I    +   +  A         + +
Sbjct: 1015 --------------RFEDVQLPMLDPEELPGHDADIADEHDLEALKEAFEQTEYAHRTPL 1060

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQN-----------IFIFEYKTHHHVPQEIEHIPY 898
             V            + GR+D +   + +             I ++KT H    +      
Sbjct: 1061 GVEVPFQLTLAGRTVRGRMDAVYRLESDTATGTGPQTPVYEIVDWKTSHTRDADP----- 1115

Query: 899  THIAQLSIYEKILKD--SYPNKSLVCLLIYVSEPKVFI 934
                QL+IY     +    P +++    +Y+   +   
Sbjct: 1116 ---LQLAIYRLAWAEHHRLPLEAVTAAFVYIRTGETVR 1150


>gi|50554103|ref|XP_504460.1| YALI0E27269p [Yarrowia lipolytica]
 gi|49650329|emb|CAG80061.1| YALI0E27269p [Yarrowia lipolytica]
          Length = 820

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 99/658 (15%), Positives = 195/658 (29%), Gaps = 137/658 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFF--LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
           L+         ++ + L      L      +K   T+   ++   L +    S+ EF  +
Sbjct: 109 LRPKFGVADDAQQVAHLKRVQKQLKTMEKQKKGKKTEADEEEPDTLSKSGSGSESEFSSL 168

Query: 111 RD--RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               +  +Y        +   +      Y++  + +  +DF+D++  T +L++K      
Sbjct: 169 YSPFKMKSYISELKVNMTSDDSDDALRLYQKQLEMSNHIDFDDILTKTAELIRKHPE--- 225

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
               +  E+  +L+DE QDT+ IQ E++   +         H+  R++  +GD  QSIY 
Sbjct: 226 ----VVSEVETVLVDEFQDTNKIQMELVDLFSR--------HTPQRSITVIGDPDQSIYK 273

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F  A  +     + +             ++ L  ++RST  IL + ++V S   +  G  
Sbjct: 274 FRFATERNFQEMRDMYP--------DTEVVFLTENYRSTDPILAIAEEVISQDASRYGGC 325

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             S   + H                                 +    L + ++    A  
Sbjct: 326 GQSRKLVGHSDF------------------------------AVTPELTKYANKYKEAVG 355

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A TI ++           K  +    I +L R  +   +                +   
Sbjct: 356 VAETIRDLR-------KVTKNRLPLSSIAILCRTNRQASMFEEALVAGNTA---CYLAEG 405

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET----- 463
                D   I+ ++   R   S ED  +F+  + +P    S      I     +      
Sbjct: 406 GANFWDKSHIRIVLNYLRCAYSDEDRSAFMEAMNNPRRRLSGKTAMLISQYLDDNYGGPN 465

Query: 464 ---ETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPH--DFFTLILGAKKG 513
              + +++   +              +  + +I  L  +      +  +    +L     
Sbjct: 466 SVYDLLHDAAHRKGLLNITQPSFEGLRQFMDHIDHLRDLINSKEYYMDEVIEYLLDKVGL 525

Query: 514 RQQFISRFGNE-VIDVLDEF------LNFTLRNEQNSYSS----------LQELISELEQ 556
            +   +    E   + L E        +       N+             L  L   L  
Sbjct: 526 DEYITTMGVREKAYERLSEVGQISDRFSVITEAADNNLWDNEVSGDISEQLSPLGQFLNA 585

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        N V I T+H AKGLE PVVF+ +        +               
Sbjct: 586 QALRADN-SGNAENGVIISTIHRAKGLEWPVVFVPNLLDGDLPMRMP------------- 631

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                    +  +E  RL +V +TRA   L +          
Sbjct: 632 ------------------------DTDIDEERRLFFVALTRAKRLLYMSYSREGEPST 665


>gi|312879906|ref|ZP_07739706.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
 gi|310783197|gb|EFQ23595.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
          Length = 659

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 102/730 (13%), Positives = 222/730 (30%), Gaps = 139/730 (19%)

Query: 1   LKNRFGLSLNESYE-LIYKDLWPLPYFQVSDINKYVSLSME-----TGNPTILKKAQTLQ 54
           L    G+S                   +V  +    +  +      +     L++ + + 
Sbjct: 49  LIRELGISPGRILAVTFTNKAAGEMRERVEKLLGERARGLRVSTFHSYGLHFLRRHEGIL 108

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           Q          F       L ++   +KN+  +  +              + F   +D  
Sbjct: 109 QEMGYGRPLLVFDRSDQKGLVKRLLAEKNLDEKRFDPGW---------LLETFSTAKDER 159

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
               +   T+    +   L   YE+  K+   LDF+DL+     LL + +    +R +  
Sbjct: 160 ---DLSSGTVNLEGMLGQLYLLYEQRMKEQGALDFDDLVTLPLLLLSRDEE---LRRREA 213

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             ++ +L+DE QD +  Q+ ++R LT +           + L  VGD  Q+IY + GA+ 
Sbjct: 214 SGLDWVLVDEYQDVNRTQYLLLRRLTSE----------GQKLLVVGDPDQAIYGWRGADV 263

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L  +R              +  L  ++RS+  IL   + V +   + +     +   
Sbjct: 264 SMILNFERDFP--------GARVTVLEQNYRSSGHILEGANGVIARNSDRREKRLWTA-- 313

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                    +   +Q+      Q +                          A  +A  + 
Sbjct: 314 -------AHRGERIQVLRARSDQEE--------------------------ASALAERVE 340

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++              +  D+ VL R    +               I           +
Sbjct: 341 GLLRDG----------YRYGDMAVLYRMNALSRTYEQKFLEE----GIPYRVVRGVAFYE 386

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF----KICTQRHETETVYEYI 470
              +KD++ + R  +   D  S   +   P     +  +      +  +  +  +V+E +
Sbjct: 387 RREVKDVLGMLRLAIQPRDRGSLERVGNLPPRGLGKKGLEVLGDWLQERTEDPRSVWETL 446

Query: 471 QKFA-NCGISKFQHVIKYIHE--LIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NE 524
           +         K +  ++ + E  L  + +     +    +           +       E
Sbjct: 447 RDQGVPAVKGKAREGLRGLAEGMLGVLDRSDRAREALVHLWEDYGYGTFLAADDPDRFEE 506

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             + + E L+            ++++++E+  +          + + V ++T+H AKGLE
Sbjct: 507 RRENVFELLSVL-----PEEGDVEQVLAEVALFTDAETT--EEDVDRVSLLTLHAAKGLE 559

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            PVVFLV     +F +                                        + + 
Sbjct: 560 FPVVFLVGMEEGIFPNGRCLG----------------------------------DRQSI 585

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           EE  RL YVGMTRA ++L +    +        +  +   + +       ++       +
Sbjct: 586 EEERRLCYVGMTRARERLYVSGAESRLLFGAFQRNGFSRFLQEIPEGCTSLEDRTRMGGL 645

Query: 705 NKDEWIAYEW 714
                     
Sbjct: 646 RDVRGSRQRR 655


>gi|255067628|ref|ZP_05319483.1| exodeoxyribonuclease V, beta subunit [Neisseria sicca ATCC 29256]
 gi|255048102|gb|EET43566.1| exodeoxyribonuclease V, beta subunit [Neisseria sicca ATCC 29256]
          Length = 1213

 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 128/878 (14%), Positives = 251/878 (28%), Gaps = 164/878 (18%)

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            ++K++     F+DL+++  D L     +  +   + Q     LIDE QDT  +Q+E+ R 
Sbjct: 364  KSKRERG---FDDLLLDVYDALTDNPQADSLAQAVAQNWRIALIDEFQDTDPLQYEIFRK 420

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +           S  + LF VGD KQ+IYSF GA+    L+                   
Sbjct: 421  IF---------ISQNKPLFLVGDPKQAIYSFRGADIYAYLQAAAD----------AQHSY 461

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  ++RS A ++  +  +F      +    D        ++R       +L     +  
Sbjct: 462  TLATNYRSHAKLINGIGALFRC--KNRPFVLDGIDYTEVGAARSES----RLSPPQTAIQ 515

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDIL 377
                N + +      + L ++      +   A  I++ +          K R + + DI 
Sbjct: 516  IRWLNGKDD------EVLNKDILRRRASEYCADEIAHTLNEAAEGRLKFKGRPVVSGDIA 569

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VLVR   +  ++    +       I  V   R  +        L AL  + L+     S 
Sbjct: 570  VLVRTFNEGVMVAKALKT----RGIQSVLLSRESVFTTPEALALAALLDYWLNPGQIGSL 625

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
              +L   LF +    ++++     E         +                         
Sbjct: 626  RFVLSGTLFGYDAQALYQLNRNEAELLNWINTSAESVAIWRKS----------------- 668

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--- 554
               +                ++R     +    + L   L  E+    S   L   L   
Sbjct: 669  -GIYAALQHFSSLHGIETGLLARGDERGLTNFHQLLE-CLSEEEGQSLSRAALHQWLNEQ 726

Query: 555  ------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                       +      ++   V+I+T+H +KGL+ P+V+                   
Sbjct: 727  ISLAQDRSVGESGLLRLESDEALVKIVTMHASKGLQYPLVYCPFVWDA---KDMKPADWQ 783

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC--- 665
            +    D     +   Q    + I              E  RLLYV +TRA +QLI+    
Sbjct: 784  ILHTADHTTELLAKSQLNEEDCIHLA------DEEMAERLRLLYVALTRAEEQLILYAAH 837

Query: 666  --------------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
                            ++++                +    + +K   L    N  E   
Sbjct: 838  CGDTADSPFAYLLEGSADSNRADTRQAYDQERKANKALGELQMLKNNWLRFLNNPPEHTD 897

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS-------------------------- 745
            + +S   P+    +       L     IP + F                           
Sbjct: 898  FSFSEDAPQPAAAQNRHLSDDLYQAAVIPARGFQFIRHTSFTGLSRQVKTRDDEREELQP 957

Query: 746  --PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRK 802
                     E    + + +          +    +  N G+ +H++L+          + 
Sbjct: 958  ALDPAETAAETERSSETALSVSDDLPNADIHHFPRGANAGVCLHEMLEKFDFAQSAENQS 1017

Query: 803  NFITSYCTKNA-KLWPAKEYKNLLLSITRL-LENPMMTTAMSCDSYSEVSVSG------- 853
            N I    T+    L      K +L +  +  L    ++         E+  +        
Sbjct: 1018 NLIAETLTRYGFDLLWTDAVKQILDTCRKTRLAAQSLSEIPPERRLPEMGFTLYTEDFKL 1077

Query: 854  -----------------------KINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHV 889
                                   +++       ++G ID +       + I +YK++H  
Sbjct: 1078 HDLRRWFARENSSLPPECIEAAERLDFQDVQGFLNGFIDMVCQDLDDLVCIIDYKSNHLG 1137

Query: 890  PQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
                 +             +  Q  IY   +   +  +
Sbjct: 1138 DSAEAYTQQAMNEAVEDHHYYLQALIYAIAVARYFKLR 1175


>gi|157363798|ref|YP_001470565.1| UvrD/REP helicase [Thermotoga lettingae TMO]
 gi|157314402|gb|ABV33501.1| UvrD/REP helicase [Thermotoga lettingae TMO]
          Length = 627

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 85/547 (15%), Positives = 179/547 (32%), Gaps = 121/547 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y   K+    +D++DL++    +L+  D    IR +  ++   IL+DE QD
Sbjct: 173 KIIEDIYREYTIEKRNQNCVDYDDLLVFAVQVLQDSD----IRLRESRKYKWILVDEFQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+++Q  +I  L+          S  + +  V D+ QSIYSF GA  + V    +I    
Sbjct: 229 TNILQLNLIELLS----------SFHKNIVVVADDSQSIYSFRGARYENVRDFMKI---- 274

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    + ++  ++RS   I+ +++         + L                    
Sbjct: 275 -----DGTKLFKIQTNYRSVEPIVKLINATIPKRSVPKVLRA------------------ 311

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                ++     + + S     A  ++  I  +I          
Sbjct: 312 -------------------VKFSDQKPIVIKTSDRQEEAAYVSKQILRLIEQG------- 345

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 ++I VL R    +       +   +  +I          T+   +KD++A  R 
Sbjct: 346 ---FDPEEIAVLYRSHSHS----LELQIELSKQQIDFKILSGIRFTETAHVKDIIAFLRI 398

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
           I +  + +S++ + +             +         +   +    +    K   +++ 
Sbjct: 399 IQNPREKISWIRVAR-LFPGIGAKTASNLAEHA-YGAALQNDVSSILDGFSQKKGQILEI 456

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQNSYS 545
              L  + +  +  D  +  L     +Q     +    E    ++  +   LR      +
Sbjct: 457 KKLLSEMQEESTVSDKIS-FLYESFYQQYLQDNYPDYKERQQDIERLIEVALRY-----N 510

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           SL+  +S+L        + + +   ++ + TVH AKGLE  VVF++      F       
Sbjct: 511 SLEHFLSDLTVN--EDVQNNVSKGQKITLTTVHQAKGLEWDVVFVISVNPGDFPS----- 563

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                            L ++  +E  R+ YV +TR    L + 
Sbjct: 564 ------------------------------YYALMENNIDEEERIFYVAITRPRKLLYLV 593

Query: 666 KHSNTSN 672
                S+
Sbjct: 594 TQQYPSS 600


>gi|313683463|ref|YP_004061201.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313156323|gb|ADR35001.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 900

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 127/845 (15%), Positives = 261/845 (30%), Gaps = 192/845 (22%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
                 + ++ +   E      +    +         ++ K      +    ++  L F+
Sbjct: 245 DFKKSYEPRMDELLHEMQSAIAQQMRRREVLYFKELFSILKLYIKSRQNMAVQSNELSFD 304

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           D+ +N + LL+++  S ++ +++D  + H+L+DE QDTS+IQ++++R L E+   G   +
Sbjct: 305 DITLNVHTLLREKLESEFLYFRLDSRLKHLLLDEFQDTSVIQFDILRPLIEEIRSGIGVN 364

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
               + F VGD KQSIY F G       +   +             +  L +++RS ++I
Sbjct: 365 EGG-SFFFVGDVKQSIYRFRGGVSALFHQVAELF---------DVRVEPLRVNYRSRSEI 414

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +  V+  F                I  +S +    G V++                    
Sbjct: 415 VDFVNGAFE---------GKIKGYIPQQSPQTLSGGFVEVL------------------- 446

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                   +     L+ R+A  I                    ++I +L    KD   + 
Sbjct: 447 ------SSDELLETLSERVALLI--------------GVGAAPEEIAILTATNKDGSAVE 486

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
            +           VV     +L    +++ L+   R+    E   S      + L     
Sbjct: 487 EVLSE----RGYDVVTETTALLISQRSVRALIEYLRYCYFGE---SIYRSNCAALLGIES 539

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +I +                             I +I                  I   
Sbjct: 540 VEIER-------------------PNVHETVTTAIDFIRRYR--------------IADK 566

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                                F+             ++E++ E+++   +      ++  
Sbjct: 567 SALL-----------------FIEALRSY-----RDIEEVVFEIDRLEASS---PQSDLK 601

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +RIMTVH +KGLE   V ++D             +          G+   I   ++ + 
Sbjct: 602 GIRIMTVHKSKGLEFEHVIVLDRLGT--PRSRSDAIVYEYEGAQLQGMHYRIKGREALDP 659

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           + +  ++  K+++ E+    LYV +TRA+  L +   + +S                   
Sbjct: 660 MYAKALEAEKRASDEDQLNALYVALTRAALSLSVIAKTKSS------------------- 700

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                        +        E  + H E+T + +    K L                 
Sbjct: 701 -------WFDPLELTPSARGVLEIKSCHTESTIVPKAPNFKALEF--------------- 738

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                         +   + +    D      GL +H  L+++        K+ + S   
Sbjct: 739 ----------GRQEESVRSHKEATHDYAAVQFGLALHYTLEMMGDFDSSSMKSALESSRN 788

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
           +      A   + +   ++RL+E+ +         Y E  +  K N         G ID 
Sbjct: 789 RYGATLHAGAMEEIEKRVSRLIEDEVFKHLTQGVRYKEQMIRHKGNL--------GVIDL 840

Query: 871 ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
           +   +    I +YK+              H  Q++ Y + ++     +     L Y+ E 
Sbjct: 841 LVEQENGWVIIDYKSGR-------EEDEKHQDQIARYREAIRS-STGRDAQGYLCYLLED 892

Query: 931 KVFII 935
           +V  I
Sbjct: 893 RVEWI 897


>gi|298244729|ref|ZP_06968535.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297552210|gb|EFH86075.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 959

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 116/839 (13%), Positives = 243/839 (28%), Gaps = 144/839 (17%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +       L      +Y++   K   +DF  L     +LL+KR         I Q + +I
Sbjct: 191 ERDKFLYALTYA-YKNYQQLLAKTNRVDFAHLQKCAYNLLQKRPE-------IIQGLRYI 242

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ IQ +++ +L                L  VGDE Q++Y F GA  + +L  
Sbjct: 243 LVDEYQDTNYIQEQILLTLARATESY--------NLVVVGDEDQALYRFRGATVRNILEF 294

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                   +          L  ++RS   I+   ++     +   G              
Sbjct: 295 TTR-----SEFASACVQHHLTTNYRSHPQIIDFYNRWMRTLDWRNG-------------- 335

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                   +      ++   Q +PQ            Q++     A ++A  I  +    
Sbjct: 336 --------EHDRLSRTEKIIQADPQATFSDYPSVLTLQDADVEQEAEQLAELIYTLKEQG 387

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            I    +   +        VR       ++       +   I+V         +   I+ 
Sbjct: 388 RISDYNQVAFLLYS-----VRS-----YMSETYIEAFHKQGIAVHCPRARQYFEQEEIRL 437

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           ++A   ++L  +       M  S    +    + ++ T     + +    ++  +   ++
Sbjct: 438 IIACFAYLLDYDGMHQDTVMEYSAFPGYVRACLQQLHTHPALVQVLQLLKEEVVHIIEAR 497

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-----QFISRFGNEVIDVLDEFLNF 535
            Q   + +     +    +   F                     R+  +    +      
Sbjct: 498 EQPGKQLLDYFYLLLFHPAFSGFLANETQRTNLVAFSQHLATFHRYYRDTSPDMSALGQA 557

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             R        L E  + L + P  +        + V++MT+H AKGLE PVV +     
Sbjct: 558 HARFMHTFLCLLYENEANLPENPNLLFP-----SDHVQMMTIHQAKGLEFPVVIVGRLDK 612

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                +                          +        +  +K    ++ RL YV  
Sbjct: 613 ASSLSRDE----------------YKNENKHLQGFYHRKPFEAEEKIATFDFRRLYYVAF 656

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           +RA   LI+                              + +    +   +D       +
Sbjct: 657 SRAKHLLILTAKRQP------------------HVEFATIWRTAPESVYARDRLRLMPCA 698

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
              P      R      +      P++     + +        P T              
Sbjct: 699 EAEPHTALKPRYSFTGHIQLYATCPRRFQFFRQFNFVPRRAQEPIT-------------- 744

Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS-------------YCTKNAKLWPAKEYK 822
                  GL +H  L+ I  L   +    +                   +     A + +
Sbjct: 745 -------GLAVHHTLERIHRLALEQPHTKLDDSKLISIFEYTFAFLAASSPASIEASQRE 797

Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVS-VSGKINCPKKDIIISGRIDQISISQQNIFIF 881
             L  +   +         +  + + ++ +  +    +   I++G+ID +    Q + I 
Sbjct: 798 QALQQVLNYVHA-------NQQALTTIADIEARFRVERDRYILTGQIDLLMQGSQGLDIM 850

Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK----VFIIP 936
           ++KT     Q+ +++ + +  QL +Y   L+           L + +E      +  IP
Sbjct: 851 DFKTSKRPEQDTDYLAF-YRQQLYLYASALQARTGQAPRRLFLYWTAEEHKKDALMEIP 908


>gi|91977214|ref|YP_569873.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
 gi|91683670|gb|ABE39972.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5]
          Length = 688

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 112/740 (15%), Positives = 202/740 (27%), Gaps = 132/740 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I + +             +       G   + + A+   L  A    
Sbjct: 69  RRAAAEMTRRVERIARRVMGDGARGGYGALSWAGTFHGIGARLLREHAERIGLDPAFTIH 128

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++          + ++   +   + P     L                    
Sbjct: 129 DREDSADLMNLV--------RHDLGFSKTESRFPAKATCLSIYSRCVNAGLPLDQVLGAN 180

Query: 121 KSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
               A      K L A Y +AK+++ VLD++DL++     + +  ++  I        +H
Sbjct: 181 YPWCAGWAAELKQLFAGYVDAKQRHNVLDYDDLLLYWAQTMTEPALADEI----GSRFDH 236

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++                 R L  VGD+ QSIYSF  A  + +L 
Sbjct: 237 VLVDEYQDTNALQASIL----------LGLKPEGRGLTVVGDDAQSIYSFRAATVRNILD 286

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +              I+ L  ++RST  IL   + V  +       +  +   I  R 
Sbjct: 287 FPKAFS-------PPARIVTLDRNYRSTQAILGAANGVIDLAAERFTKNLWTDRAIGARP 339

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                               L      +  AR I   +     +
Sbjct: 340 -----------------------------------QLVGVRDEADQARYIVERVLEHRES 364

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T                VL R    +  +            I  V        D   +K
Sbjct: 365 GTTLKQQ----------AVLFRTSSHSAPLELEL----TRRNIPFVKFGGLKFLDAAHVK 410

Query: 420 DLMALGRFILSQEDDLSFVCM-LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           D++AL RF+ +  D ++   + L  P    +                             
Sbjct: 411 DMLALLRFVQNPRDRVAGFRVMLLIPGIGPASAQKALDAISAAADPLAALANIPSPPRAG 470

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
           + ++  I  + EL               +       +  I          L +       
Sbjct: 471 ADWRDFIDAVRELRDGVAGWPAEIERARLWYEPHLDR--IHDDAATRRADLVQLAQIA-- 526

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
              + Y S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++  
Sbjct: 527 ---SGYPSRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWKSVFVLNVV 583

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                          +  EE  RLLYV 
Sbjct: 584 DGCMPSDLGTGTS----------------------------------AEIEEERRLLYVA 609

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA D L +          ++            +    R    +L     +  W     
Sbjct: 610 MTRARDDLHLVVPQRFFTHGQNAMGD-----RHVYAARSRFIPDRLLTLFERVSWPHVAP 664

Query: 715 STHHPENTPLEREETIKQLM 734
           ST           +   ++ 
Sbjct: 665 STAGYPTRQAPPIDIGARMR 684


>gi|259481647|tpe|CBF75362.1| TPA: DNA helicase and DNA-dependent ATPase (Eurofung) [Aspergillus
           nidulans FGSC A4]
          Length = 997

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 106/766 (13%), Positives = 214/766 (27%), Gaps = 177/766 (23%)

Query: 53  LQQASQTQCIEERFSLLSSF--FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
           LQ+        +  +++      L     P          K      + +   Q++  K+
Sbjct: 109 LQKGFGIADSGDSLAIIRRIVKRLQLGIQPNTARARISHQKAHGVSPDDVAAKQNKISKL 168

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +     +              +   YE     + +LD++DL++   +LL+K        
Sbjct: 169 LEHREFVQ--------------VYREYESELATSNLLDYDDLLLRCAELLRKHP------ 208

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            K    +  +L+DE QDT+ IQ++++  L           S  R +  VGD  QSIY F 
Sbjct: 209 -KCVSNVQVVLVDEFQDTNQIQYDLMNLLA----------SWNRRITVVGDPDQSIYGFR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            AE + + R +R+ +           ++ L  ++RS+  IL     V     +       
Sbjct: 258 SAEIENLKRMQRLYRN--------TEVVLLEDNYRSSGSILKSAQDVIEQDLSRPAKKLQ 309

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
            T T                                              SA   A+ + 
Sbjct: 310 PTHTFGTLPVLRKLP-----------------------------------SAEDEAQWLV 334

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I   I           ++++  D  +L+R    +  I          + +        
Sbjct: 335 LEIKRCI-------VLTGKLLKYSDFAILLRSASLSRQIESAM----GKHGVPYRMVGGQ 383

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEY 469
              D + +K L+   R I   E+  + + ++  P     E+ +  +     +  + +++Y
Sbjct: 384 RFFDRVEVKLLLDYLRVISHPENSEALLRIINVPSRKIGEETVKMLLNGAEKAGKPLWDY 443

Query: 470 IQKFANCGI-----------SKFQHVIKYIH----ELIHIAQFCSPHDFFTLILGAKKGR 514
           I+  A                    ++  I     +L       +P     +++     R
Sbjct: 444 IKDVAQGRRSTEKAMSKPTNQGLSSLVGLIEYSREKLRQCVDRSAPRRLLEIVMKRLSFR 503

Query: 515 QQFIS---RFGNEVIDVLDEFLNFTLRN-------------------EQNSYSSLQELIS 552
           +   +            ++E ++                        +Q S+   + L  
Sbjct: 504 EFITATYGSNDENRWANVEELMSQADDATAADESEQDENLPEIAGLTQQESHPGEEALSR 563

Query: 553 ELEQYPP-------TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L                       +V I T+H AKGLE PVVF+      +  H     
Sbjct: 564 FLANVALSTEVQPKEETEGEDQAQEKVTISTIHAAKGLEWPVVFIPAAYEGIIPHS---- 619

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             +    +E  RLLYV MTRA   L + 
Sbjct: 620 ----------------------------------RAEDSDEERRLLYVAMTRAQALLYLS 645

Query: 666 KHSNTSNEKKS-------NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                + E           Q      +       +      + + + ++   A       
Sbjct: 646 YPLRQARENAETNVTSFLPQELITSRLRPVGPKLDEKVVYGIADILRRERPSAVAMLEGL 705

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                +  ++  +   +   +  +       D            + 
Sbjct: 706 DSLPSVYDDQWTEDGRESPGMIIRWDGSRATDDEPSSKRRRYEREQ 751


>gi|262375119|ref|ZP_06068353.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145]
 gi|262310132|gb|EEY91261.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145]
          Length = 1367

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 109/811 (13%), Positives = 230/811 (28%), Gaps = 93/811 (11%)

Query: 75   TQKFTPQKNIITQEINKKSPDLKEK--LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
               F P   +  +        L  +  L  + D   +++   +      +T     + + 
Sbjct: 306  KTDFQPTTQVFNKSCPDAEQQLILQHSLIVAIDALCEVKQYLDEQLQQLTTYLEFHIIQS 365

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            +     +  ++     F   I    + L+ +    + ++ +      IL+DE QDT+  Q
Sbjct: 366  VQTRLPQTLQQQGETTFSQQIRTLAEALQGQQGQRFAQF-VQARYPLILVDEFQDTNQDQ 424

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +++  +  D             +  VGD KQ+IY F G +          N+  A    
Sbjct: 425  DDLLAKIWRDV-----NRVQSGCMIMVGDPKQAIYGFRGGD------MLTYNKAHADVRH 473

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            ++     L  + RS   ++ VVD +F    +      +       ++        V    
Sbjct: 474  KQGREYTLMQNHRSVKPLVEVVDALFQRQMDFG----EQVQYTLIQAGSRPHPDLVD--- 526

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT-----DTIFSNGK 367
                      NPQ   W    +S  +       A ++A+ I  ++               
Sbjct: 527  ------TGITNPQPLRWIQLGESDLE-------ADQVAWKIRALLNQSAQQQLYFQQQEH 573

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +  + A DI VL              +       I      +  +      +D+ A+   
Sbjct: 574  QHSLSADDIAVLGFGHFAL----EQVKQRLQRMGIPCYKESKQSVFASPIAQDVAAVLTA 629

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            I+   ++      L + L  F+   +  +                            I  
Sbjct: 630  IMDPFNEAKVKRALLTRLLGFNLKKLIDL------------------QGQSEGLSRYIAD 671

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEV----IDVLDEFLNFTLRNEQ 541
            +  +  +         +   L   +     ++     NE     +  L E L+      Q
Sbjct: 672  LDIIREMWFEKGFLTAWNYALNLFQVWTNLVASQSLDNERVVVNLRHLTEILSQQSEYYQ 731

Query: 542  NSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +       + +L+      + K    +  + V++MT+H +KGLE  VVFL+      F 
Sbjct: 732  GAQKLYHWYLRQLQSPSGKDSEKERKLSGDHGVQLMTIHASKGLEFKVVFLLG-ADAAFD 790

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                     + +   D  +      + +  N+    I         E +RL YV +TRAS
Sbjct: 791  VNKGNLNFSLSAPEQDNILEQSRVIAVNHKNLHEQAILQNAARNAAENHRLWYVALTRAS 850

Query: 660  DQLI----------ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             ++               +    +     +    +V      +      +  +       
Sbjct: 851  HRVYAMLQDQNAQSDSGLAFWRGQGDQLFQHALSLVEPPLSQEPPRLVEQSNHHQVDMRA 910

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                    +P         +  QL         + +  + D     I      +      
Sbjct: 911  QPLPERQFYPRTKTSFTALSQHQLHGHILQDDLVTAYEQPDSAADEIHFTGLEEQPAAVP 970

Query: 770  LES-LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS- 827
            L+   L+  +    G  +H + + I           I       A     +  +    + 
Sbjct: 971  LDWIRLNFPKGTVAGTFLHSIFEHIDFQDSSYWNLEIRRRFKNTAPQIWQELKEKFEQAF 1030

Query: 828  -ITRLLENP----------MMTTAMSCDSYS 847
             I  +LE             + T     + +
Sbjct: 1031 HIRSVLEQAFSLHYQAAVVNLRTLFQATAQA 1061



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 22/137 (16%)

Query: 786  IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
            +H +L     +     +     Y ++        +    +  I +L     +        
Sbjct: 1184 VHDILATPIQVDFALAQLEAKQYLSEFPFYLSLTDAPLQIRQIHQLFLGHDI-------- 1235

Query: 846  YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT------ 899
                 V    N  K    ++G ID +    Q   I +YK++   P +  +          
Sbjct: 1236 -----VMSDFNEAKSARYLTGSIDLVYFDGQRYHIADYKSNFLGPDQQHYSAEAIQQNMS 1290

Query: 900  ---HIAQLSIYEKILKD 913
               +  Q ++Y   L  
Sbjct: 1291 QSSYWLQAALYLVALHR 1307


>gi|294631280|ref|ZP_06709840.1| UvrD/Rep family helicase [Streptomyces sp. e14]
 gi|292834613|gb|EFF92962.1| UvrD/Rep family helicase [Streptomyces sp. e14]
          Length = 988

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 118/777 (15%), Positives = 216/777 (27%), Gaps = 124/777 (15%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEINKKSP 94
           S  +          A+ L++A          F  L S  L       ++++      +  
Sbjct: 140 STRLLADATRYQLAARVLREAPGPYPALTRSFPDLVSDLLALDAELAEHLV------RPE 193

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           DL+       DE    +      +    T A+      L   Y  AK++  +LDF D I 
Sbjct: 194 DLRAWDAGLLDELATAKLSNADLRKVPETAAARRELAGLVLCYRAAKRERDLLDFGDQIA 253

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               L +  +V   +R +       +L+DE QDTS+ Q  ++  L            +  
Sbjct: 254 LAARLAQLPEVGRLLREE----FRVVLLDEYQDTSVAQRILLAGLFGG--------GTGH 301

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            + AVGD  Q+IY + GA    +          A   G+  +   L  + RS   +L + 
Sbjct: 302 PVTAVGDPCQAIYGWRGASVANLDDFPDHF---AHADGRPAARQALSENRRSGGRLLDLA 358

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + + +                     R    G   L              +++       
Sbjct: 359 NGLAA-------------------PLRAMHAGVAALRPA--------PGAERDGLVRCAL 391

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                   + LA  +A+ +                     +I VL R   D   I     
Sbjct: 392 LPTHAEEIAWLADSVAHLVRT--------------GKAPGEIAVLCRTASDFAEIQGALV 437

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  + V       L     + DL+A+   +     + S V +L  P +     D+ 
Sbjct: 438 A----RDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGARDLA 493

Query: 455 KICTQRH---------------------------ETETVYEY----------------IQ 471
            +  +                             E  ++ +                   
Sbjct: 494 LLGRRARLLVAHARVADDDPDRRLAEAVEGVDPAEVISLADALDTFLESPLDGRGDDDGL 553

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDV 528
            F+     +F  +   + EL   A      D    +L       +  +          + 
Sbjct: 554 PFSPEARVRFARLAAELRELR-RALSDPLMDVLHRVLAVTGLEVELSASPHALAARRRET 612

Query: 529 LDEFLNFTLRNEQNS-YSSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLE 584
           L  FL+       N   +SL   +  L            A     N V+++T H +KGLE
Sbjct: 613 LSNFLDVAASFAANEREASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLE 672

Query: 585 SPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
             VV +    +  F     ++       ++P         +    +      +    + +
Sbjct: 673 WDVVAVPGLVTGTFPSAQGREKWTAQAKVLPHALRGDADTLPDVGAWDAKG-MKAFHEAM 731

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           K     E  RL YV  TR    L+   H    ++KK    + +             +   
Sbjct: 732 KDHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSDFLRALYDHCAAGYGEIEA 791

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             +   + E           +  PL  + T  +   E     +          E   
Sbjct: 792 WADEPAEGEENPALHRAAADQVWPLPLDATALRRRREAAATVRAHLDALTARAEDAP 848


>gi|154244726|ref|YP_001415684.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154158811|gb|ABS66027.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 1143

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 128/967 (13%), Positives = 275/967 (28%), Gaps = 161/967 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +  E  E +                    L +             L          +  +
Sbjct: 256  AAGELSERLIAAAPDAAPKLWIGTFHAFGLDLV----RRYHDKLGLTPNPALFDRSDAIA 311

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK--MFKSTLA 125
            +L     T      +N+    +     D+   + +++DE           +    ++   
Sbjct: 312  VLEEILPTLPLVHYRNLWDPAMV--LRDIVAAISRAKDELADPARYRALAQGMAAEAVDE 369

Query: 126  SLTLAKY-------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
               +A         +   YE+A +K+  +DF DLI+    LL+  + +   R  +     
Sbjct: 370  EARIAAAKCLEIADIYDLYEQALRKHGGVDFGDLIMRPARLLETDEAT---RIAVQLRHR 426

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H+L+DE QD +     +++ +  D             L+ VGD +QSIY F GA  + ++
Sbjct: 427  HVLVDEYQDVNRASARLLKLVAGD----------GERLWVVGDARQSIYRFRGASSENMV 476

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            R  R             ++ +L +++RST  I+     V      + G+       +   
Sbjct: 477  RFGRDYP--------GAAVDQLGVNYRSTDQIVRSFVAVAPRMGASHGMLA-----LALE 523

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R       ++        +                          A  +A +I  + G
Sbjct: 524  ADRGAAPSRPEICRFETLDDE--------------------------AAGLAASIRELEG 557

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                        ++ +D  VL R       I            I ++      L +   +
Sbjct: 558  AG----------VRLRDQAVLCRTNGRLNEIAAALEA----RGIPILHLG--SLFEREEV 601

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            +DL+ L    +    D + V +   P +  S  D + +                 A+   
Sbjct: 602  RDLLCLLSLAVDPFGD-AIVRVGAMPRYGLSLQDAYCVSRHLRSIGKPALAGLAEASAAP 660

Query: 479  ---SKFQHVIKYI-HELIHIAQFCSPHDFFT-LILGAKKGRQQFISRFGNEVID---VLD 530
               +  +  ++ +  +L  +    S  DF    +L      +Q               + 
Sbjct: 661  GLSTAGRAGVERLAADLAGLRANASAWDFLATYLLDRTDLAKQLSQADSLTAQMRAVAIW 720

Query: 531  EFLNFTLRN--------EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
            +FLNF             Q +   +++L+   E+       A + + + VR+MTVH +KG
Sbjct: 721  QFLNFVREQVPVGGGLPIQRTLDRVRQLVLLAEERDLRQVPAAALHLDAVRLMTVHGSKG 780

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE   V +       F   +              G     P+               K++
Sbjct: 781  LEFEAVHIPGLTVASFPSSNR-------------GQRCPPPRGMVEGAGDLSPADEAKRA 827

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              +E   L +V ++RA   L +       N    +   +   +  +  +           
Sbjct: 828  HDDEEECLFFVALSRARTHLRLYHARKQRNGSGRSASPFLGWIPATLLD----------- 876

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                      E S       P     +    +          S + +    P     + +
Sbjct: 877  ----------EISNPPTLPLPAGASTSQPIAIAWPADWSVTDSRLGSYEKCPRRFFYTHV 926

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
               G     +  S          ++ LL+ +             +               
Sbjct: 927  LGLGGARKPTAFSRTH-----DCLYDLLRWLADTRRTAEPTVADAESAFEKIWGTRGPTD 981

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-------- 874
            +   +  R L + ++   +   +      +  +     +        ++ +         
Sbjct: 982  HAFAADYRRLASRLIGALVRSGAGRRFREAQPLAIDFPNG-------RVVVEPNELAELP 1034

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS-EPKVF 933
               + I   +T H    E + +   +     +Y    +  +  +++V  L       +  
Sbjct: 1035 DGTVVIRRVRTGHKRSDEYDRL--EYT----LYHLAAESQFGGRAVVQALHLTDETAEAV 1088

Query: 934  IIPQNKL 940
             I   KL
Sbjct: 1089 AISATKL 1095


>gi|329928663|ref|ZP_08282517.1| UvrD/REP helicase [Paenibacillus sp. HGF5]
 gi|328937626|gb|EGG34041.1| UvrD/REP helicase [Paenibacillus sp. HGF5]
          Length = 822

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 88/560 (15%), Positives = 180/560 (32%), Gaps = 95/560 (16%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + + A YE  K+++  +DF+D+++ +  LL      + +   + +   ++++DE QDT L
Sbjct: 210 RQIFARYEAWKEEHGQMDFDDILVLSYRLLSHD---SGLLASLQRRYRYVMVDEFQDTGL 266

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           + +E+++ +              R L  VGD+ Q+IY F+GA  + +L   +        
Sbjct: 267 LPYELLKKIVA----------PHRNLMVVGDDDQTIYGFNGARNEFILEFDQTFP----- 311

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 ++ L +++RS + I+ + +++  + E  +     ST         +        
Sbjct: 312 ---GAKVVTLDINYRSLSSIVGLGNEIIRVNERRRPKQLRSTRKSSSVPLYLRPGDP--- 365

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                              A  +   I+  +             
Sbjct: 366 --------------------------------DQEAELLLTHITEQVRE---------HG 384

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            Q +D  +L R   ++     +   L       +   +  +  +   +K LM   R  L 
Sbjct: 385 KQYRDHAILYRTANNSR---AIFEQLVMREIPFIHYENGDLFYEQWIVKPLMDHLRLSLD 441

Query: 431 QEDDLSFVCMLKSPLF----NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
           + +  +   ML +         +          +    +         +  I   +   K
Sbjct: 442 RRNFTAMEGMLHTLYINRDKGMAFIRQQDAPRPKKGPLSHLLSFPGLKDFQIENIRERSK 501

Query: 487 YIHELIHIAQFCSPHDFFTLILGA--KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            I  L  +    +  +          +   +Q I+     + + LDE      R      
Sbjct: 502 LIKSLKAMEPLQAVQEMRRQFYDKFLEADERQEITLHKEFIQEGLDELEASAKRF--GDI 559

Query: 545 SSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           +     +  L      +       + + VR+MT+H +KGLE P V L+     +  H   
Sbjct: 560 AEFVGFVDRLIIIHKEMAAMKRDEHADAVRLMTIHKSKGLEFPSVCLIGASEGILPHTSA 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                 +  +       +       EE  RL YV +TRA D+L+
Sbjct: 620 LDAE------------------RRDDQRPLSDKEDKALDALEEERRLAYVAITRARDELV 661

Query: 664 ICKHSNTSNEKKSNQRTWYD 683
           I         K    R + D
Sbjct: 662 ISSPGFYRGRKAEVSRFFRD 681


>gi|237742073|ref|ZP_04572554.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 4_1_13]
 gi|229429721|gb|EEO39933.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 4_1_13]
          Length = 1075

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 128/865 (14%), Positives = 290/865 (33%), Gaps = 120/865 (13%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            N + +  + +  +      +   E   +        +         L+  +   Y+  K 
Sbjct: 305  NKLKKASDAEHKEYINARHEELREI--LSKEIFNEVLIPYEEKIFELSSEIYNLYDSFKI 362

Query: 143  KNCVLDFEDLIINTN-------DLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWE 194
            ++    F D+ I T        + L+  +    I ++ +D  I  I IDE QDTS++QW+
Sbjct: 363  RDKKFTFSDIAIYTYMAIFNKNNALRDENGLTDIFFETLDMNIEAIFIDEFQDTSILQWK 422

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++   T+            +T+  VGDEKQSIY +   E +     + I +         
Sbjct: 423  ILYEFTK----------KSKTVICVGDEKQSIYGWRDGEKRLFENLEIILE--------- 463

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                 L  S+RS  +I++  ++ F   E                         ++ W+  
Sbjct: 464  AKKDSLDKSYRSDRNIVSYCNQFFKAIEK------------------------MEDWKFS 499

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
             S+ +S+ +   ++          E                 +  +T+     K++    
Sbjct: 500  TSEVNSKNDGYVKAICIKDLQDEIEDEEQ----------KKELNINTVLLQELKKIEPYD 549

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            ++ ++ R   +   I  L    K    I  + N+   + ++  I +   L ++++  E++
Sbjct: 550  NVAIIARTNAELSEIANLLEDEK----IPYILNNEKDILEYSGIFECFELLKYLV-YENE 604

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI---SKFQHVIKYIHEL 491
            L+    + SPL NF   +I  +   + E  +   + Q           K    ++ I  L
Sbjct: 605  LALFNFISSPLSNFGTAEIEILLKNKKELFSYINFSQDNDFINFLENKKIIRFLEKIVYL 664

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                +  +  D    I+   +    F      +    + +F   T        SS+ EL+
Sbjct: 665  KKNYKNFTVQDLIFEIIKKFQFIDYFNKDNEVK---NIYDFYLLTNYY-----SSILELL 716

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             + ++   ++    ++    V ++T+H +KGLE    F++    +  +        +   
Sbjct: 717  DDYKENKLSLS-DTNSERKGVELVTIHKSKGLEFKTTFVMKNSKKSKTDDIDFLFEMNDH 775

Query: 612  LNDDPGIPIWIPQ-SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             ++                    D I++  K  +EE     YV +TR  + LI+      
Sbjct: 776  YDETVFSLFCKKGYRHILETCFRDRIENYDKKIKEEEINNFYVALTRPKNNLIVIYEDRI 835

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
              +K  N+ +  ++       ++   +  + +     +      S +  +N  +  E+  
Sbjct: 836  FEKKSLNEFSSEEL--KGISLEDISFEKSVIDDFFDCKIGEISLSDNSQKNENVIEEDLE 893

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
              L++ Q          + +                  + + LL   +    G+++H   
Sbjct: 894  SDLLNSQPYFTSSIYENEEEAE-----------NIEINDSKFLLETEEKRMIGILVHYFF 942

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSCDSYSE 848
            + +    + + K   T    K    +  ++   +    +I   L         S   ++ 
Sbjct: 943  ENLKYGTDEEVKFSKTLCYKKYLSYFGEEKLDKIFSKENIEMFLTKD--KEIFSKK-WNH 999

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            +     +   ++      RID++ I         I+I ++KT                 Q
Sbjct: 1000 IYSEYVLYDYEEKK--EYRIDRLMIKDNGDGTGEIYIVDFKTGGKDKS-----------Q 1046

Query: 904  LSIYEKILKDSYPN---KSLVCLLI 925
            L  Y+ +LK ++       +    +
Sbjct: 1047 LKTYKDVLKKNFEELQKYKIRTKFL 1071


>gi|284992623|ref|YP_003411177.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065868|gb|ADB76806.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 1062

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 113/961 (11%), Positives = 248/961 (25%), Gaps = 119/961 (12%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPY----FQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
           L++R    +  +        +         + + +       + T        A+ L+  
Sbjct: 86  LRDRVAARVARTIREPLARTFHSYAYGVLRRAALLRGEAPPRLLTAAEQDALVAELLRGD 145

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
              +        L     T  F                +L+E L ++ +  +        
Sbjct: 146 LAGEGAVRWPESLLPALTTAGF--------------RGELRELLLRATERGVDA--ELLA 189

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKK-------KNCVLDFEDLIINTNDLLKKRDVSAWI 169
               ++   +   A      YE                D  +L+      L+       +
Sbjct: 190 AWSRETGNEAWLHAAAFQEQYEAVTAFSTAGGGDASGYDPAELVRAAIAELEDDPA---L 246

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                +    + +DE QDT   Q E+++ L                        Q++Y+F
Sbjct: 247 LRAERERARWLFVDEYQDTDPAQVELLQLLAGGGGDLVVVGD----------PDQAVYTF 296

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GAEP+ ++      +   T +G+    + L +  RS   +L V  +V            
Sbjct: 297 RGAEPRGIVEFPERFR---TVSGRPAPRLSLGVCRRSGPALLDVSRRVAEALPGPWE--- 350

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA--SILAR 347
                 R  +    + G  ++     +  ++             D +P    A     A 
Sbjct: 351 ----HRRLAAVEGAEEGAAEVHVFGSASVEAAYVADTLRRAHLVDGVPWSGMAVVVRTAL 406

Query: 348 RIAYTISNMIGTDTIFSNGKKR-VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            I      +         G     + A+  +  +       L                  
Sbjct: 407 AIGPLRRALTSAGVPVEVGTDDLPLAAQPAVAPLLAALGALLPRPGAEPGTLALDEPGAE 466

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                      + DL  L R +            +         D+           E +
Sbjct: 467 ALLTSALGGATVLDLRRLRRAVR-----------IAQARRGVDADERGAPLATALTDEGL 515

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
            E +         +   V+        +A+  S  D    +        ++         
Sbjct: 516 LEELPDAVARPARRVADVLAAGRV--ALARDGSAEDVLWAMWQRSGLAGRWARASAAGGA 573

Query: 527 ---------DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH--SANHNEVRI 574
                    D +    +      ++   +++   +  L              +  + VR+
Sbjct: 574 AGAVADRDLDAVVALFDAAAGFVDRLPSATVGAFVEHLSAQELPGVGGAGRESATDAVRL 633

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           +T H +KGLE  VV +      ++     +   +   +               R   +  
Sbjct: 634 LTAHASKGLEWDVVCVAGVQEGIWPDLRDRGTLLGTEVL------------VERVAGIDG 681

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            +   +     E  RL YV  TRA  +L++       +   +       +       D+ 
Sbjct: 682 AVLDRRVQMLAEERRLFYVACTRARRRLVVTAVEGALDGPDAGATASRFLDLVVPPPDDG 741

Query: 695 VKKIKLTNSIN-KDEWIAYEWSTHHPENTPLEREETI-------------KQLMDEQKIP 740
                L  S+           +   P+  P  R                     D   + 
Sbjct: 742 RPLTPLPRSLTLPALVAELRRAVSDPQTEPARRSAAAAVLRRLADEGVPGASPADWWGLA 801

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLES-------LLSDNQTFNRGLIIHKLLQVI 793
                       E   + PS I+T  +  L+          S + T   G  +H + Q +
Sbjct: 802 PLSDDAPLVPDGEAVRVRPSAIETFQRCPLKWVLGAVGAEASPDATRTVGSAVHAVAQQV 861

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                        +       L P    +   ++   +L+        + +    ++   
Sbjct: 862 AEGLPAAGAPAALAEELDQLDLGPGWADQRQRIAARDMLD--RFLRWHAANGRELLAAEA 919

Query: 854 KINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
             +       I G++D++       + + + KT     ++I+        QL+ Y+  + 
Sbjct: 920 DFDVTVGRARIRGQVDRLERDGAGRLVVIDLKTGRSAARDIDT-----HGQLAAYQVAVA 974

Query: 913 D 913
            
Sbjct: 975 A 975


>gi|296115456|ref|ZP_06834090.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
 gi|295978029|gb|EFG84773.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769]
          Length = 700

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 110/674 (16%), Positives = 204/674 (30%), Gaps = 125/674 (18%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R  + +    E I K +       ++D   +       G   + + AQ   +  A    
Sbjct: 80  RRASVEMTRCVERICKTVLGDKAGPLADALAWAGTFHSIGARLLREYAQQIGMDPAFSIH 139

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F+  +K    +        +  ++  S      +       K 
Sbjct: 140 DREDSADLMNLIRHDLGFSKTEKRFPGKGT---CLAIYSRVVNSGAPLADVL-----LKH 191

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           +          K L A Y  AK++  VLD++DL++    ++    ++A I      + +H
Sbjct: 192 YPWCAGWEVQLKQLFAGYVTAKQEQGVLDYDDLLLCWAQMVSDPVLAADI----GGKWDH 247

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q +++                   L  VGD+ QSIY+F  A  + +L 
Sbjct: 248 VLVDEYQDTNRLQADIL----------LGMKPDGSGLTVVGDDAQSIYAFRAATVRNILD 297

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                            ++ L  ++RST  IL   + V             +        
Sbjct: 298 FPASF-------DPPARVVTLDRNYRSTKPILDAANAVIGEAAERFTKDLWTDR------ 344

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
           +   +   V +W+                              +  A  IA  +      
Sbjct: 345 ASEEKPRLVTIWD-----------------------------DTAQANYIADRVLEEREA 375

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T                VL R    +  +            I  V        D   +K
Sbjct: 376 GTPMKQQ----------AVLFRASHHSGTLEVEL----TRRNIPFVKFGGLKFLDSAHVK 421

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           D++AL RF  +  D ++   +L+  L         ++     E+   +E ++        
Sbjct: 422 DVLALLRFAQNPRDRIAGFRVLQ-LLLGVGPSSARRVLDTMGESAHPFEALKDV--KAPQ 478

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
           +   V      L+             +             R   +    L + +      
Sbjct: 479 RSGEVWTGFVNLLTAVGSHQVGWPGEIAAVRYWYEPHL-ERLHEDASTRLADLVQL--EQ 535

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               Y S ++ ++EL   PP +    +     + + + + T+H+AKG E   VF+++   
Sbjct: 536 IAGGYPSREKFLTELTLDPPDVTSDQAGVPLLDEDYLILSTIHSAKGQEWKNVFVMNAVD 595

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                                                   +   +K   EE  RLLYV M
Sbjct: 596 GCIPSD----------------------------------LATGEKDDIEEERRLLYVAM 621

Query: 656 TRASDQLIICKHSN 669
           TRA D L I     
Sbjct: 622 TRAKDSLDIMVPQR 635


>gi|317486027|ref|ZP_07944881.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
 gi|316922705|gb|EFV43937.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
          Length = 741

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 100/671 (14%), Positives = 206/671 (30%), Gaps = 137/671 (20%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS--AWIRYKI 173
             +  +  L      + +   Y   ++++ +LD++DL+    DLLK    +    +  + 
Sbjct: 158 LQRDAQHLLPHADALESIGEAYRGYRRQHGLLDYDDLLFELEDLLKGDPEAGREGLAERF 217

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            +   +I++DE QDT+ +Q  ++R L  +             + AVGD+ QSIY+F GA+
Sbjct: 218 RERYRYIMVDEYQDTNRVQARLVRLLAGE----------AGNVMAVGDDAQSIYAFRGAD 267

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            + +L   ++             +I L  ++RST  +L V + V +        +  +T 
Sbjct: 268 VRNILDFPKLFP--------GTRVIRLEENYRSTQPVLDVANAVLAPASEGFRKNLFTTK 319

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               ++ R      V+L   +                               A  +A  +
Sbjct: 320 ENTPKTPR------VRLVRPMSDLT--------------------------QANVVAARV 347

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             ++              QAK+I VL R    +  +        +   I           
Sbjct: 348 EELLDR-----------YQAKEIAVLFRAGYQSYHLEVAL----SKRGIKFRKYGGLRYA 392

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
           + + +KD++A  R  ++  D  SF  +              KI     + +  ++ ++K 
Sbjct: 393 EAVHVKDVVAFVRLAINPLDMPSFERVAGLSK-GVGTKTAEKIYHVAAQGD--FDALRKA 449

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEF 532
                  +  ++  + +L       +P     +++     R Q             L E 
Sbjct: 450 CTKYPDLWSDML-LLDKLRE--HNLTPAALIEMVIEHYTPRLQAIFPDDWPRRQQGLSEL 506

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            +          + L++ +++L    P            V + T+H++KGLE   V L+D
Sbjct: 507 AHIASAY-----TDLEQFVADLSLETPEDDADEFDEAGRVVLSTIHSSKGLEWDAVILLD 561

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                F  +H                                     +    EE  RL+Y
Sbjct: 562 LVEDRFPSRHALV----------------------------------RPEDFEEERRLMY 587

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V  TRA + L +   +               +       +E          +       +
Sbjct: 588 VACTRAREDLELFVPAT--------------LYSRQNGGNEPATPSPFVRELPFSALEEW 633

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
           +                I +             P  +   E    N   +       +  
Sbjct: 634 QEGYTG----------RISKRSTSFAGDPAFSRPSLDIPRELANPNAGRVKGVFPPPVLP 683

Query: 773 LLSDNQTFNRG 783
               ++  ++G
Sbjct: 684 EAKGDRAASKG 694


>gi|253681687|ref|ZP_04862484.1| superfamily I DNA helicase [Clostridium botulinum D str. 1873]
 gi|253561399|gb|EES90851.1| superfamily I DNA helicase [Clostridium botulinum D str. 1873]
          Length = 726

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 96/560 (17%), Positives = 193/560 (34%), Gaps = 111/560 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       YE+ K KN +LDF+DL +    L  K      +         +ILIDE QD
Sbjct: 214 EIFLECYRTYEDYKLKNNLLDFDDLQLRCKSLFLKNI---KLLNGYSNLFKYILIDEFQD 270

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
              IQ ++++ L +D F           +FAVGDE Q IY F G++P+ ++  +      
Sbjct: 271 CDEIQIDILKLLNKDNF-----------IFAVGDEDQCIYGFRGSKPECMVNFEMHF--- 316

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                ++   I L  ++R    ++ + D +    +       ++                
Sbjct: 317 -----KEGKKIFLNTNYRCPKSVVNISDNLIKNNKMRNDKVFNAYK-------------- 357

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                          +  + +  +Y D   Q       A  I+  I  +           
Sbjct: 358 --------------EDMTKINVMNYIDERNQ-------ADNISMNIIKL---------NS 387

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGR 426
               + +D  ++ R   ++  I           KI     D+     +H   KD+++  +
Sbjct: 388 VSGYKYEDNAIIYRTNVESRSIIDSF----IRKKIPFKLLDKEYNFFEHFICKDIISYLK 443

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +   D  SF+ ++  P    S+ ++ ++    +  E  +E ++   N  I + +  I 
Sbjct: 444 LSIDCTDKESFLRIINKPFRYISKVNLERVKR-NNSGEDCFEILKDNENIPIFQLKK-ID 501

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV-LDEFLNFTLRNEQNSYS 545
            I + I      S       +L   +  +          +D+   E +     +    Y+
Sbjct: 502 EIKKDIQYLNKMSLSGAINSVLNNLEYYEYLKDYSIKFKMDISELEEILEEFISASKDYN 561

Query: 546 SLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           ++   ++ + +    IK   ++   + V + T+H  KG+E   VF+++   +   H +  
Sbjct: 562 TIITFLAHINEVQYEIKNNKNNEEKSGVILSTIHGVKGMEFKNVFILNCNEENIPHINSI 621

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                               +   EE  RL YVG+TR  + L +
Sbjct: 622 ------------------------------------ERNIEEERRLFYVGVTRTIENLWL 645

Query: 665 CKHSNTSNEKKSNQRTWYDM 684
           C  ++   + K   R   + 
Sbjct: 646 CICNDIRGKTKKTSRFIEEC 665


>gi|315644888|ref|ZP_07898017.1| UvrD/REP helicase [Paenibacillus vortex V453]
 gi|315279830|gb|EFU43131.1| UvrD/REP helicase [Paenibacillus vortex V453]
          Length = 819

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 92/560 (16%), Positives = 181/560 (32%), Gaps = 95/560 (16%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + + A YE  K+ +  +DF+D+++ +  LL        +   + +   ++++DE QDT L
Sbjct: 210 RQIFARYEAWKEDHGQMDFDDILVLSYRLLSNDPG---LLASLQRRYRYVMVDEFQDTGL 266

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           + +E+++ +              R L  VGD+ Q+IY F+GA  + +L   +        
Sbjct: 267 LPYELLKKIVA----------PHRNLMVVGDDDQTIYGFNGARNEFILEFDQTFP----- 311

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 ++ L +++RS + I+ + +++  + E  +          + RS+R      + L
Sbjct: 312 ---GAKVVTLDINYRSLSSIVGLGNEMIRVNERRR--------PKQLRSTRKSSGVPLYL 360

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                              A  +   I+  +             
Sbjct: 361 RPGDP---------------------------DQEAELLLTHITAQVQE---------HG 384

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              +D  +L R   ++     +   L       +   +  +  +   +K LM   R  L 
Sbjct: 385 KPYRDHAILYRTANNSR---AIFEQLVMREIPFIHYENGDLFYEQWIVKPLMDHLRLSLD 441

Query: 431 QEDDLSFVCMLKSPLF----NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
           + +  +   ML +         +          +    +         +  I   +   K
Sbjct: 442 RRNFTAMEGMLHTLYINRDKGMAFIRQQDAPRPKKGPLSHLLTFPGLKDFQIENIRTRSK 501

Query: 487 YIHELIHIAQFCSPHDFFTLILGA-KKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQNSY 544
            I  L  +    +  +          +  ++       E + + LDE      R   +  
Sbjct: 502 LIKGLKAMEPLQAVQEMRRQFYDKFLEADERQEMTLHKEFIQEGLDELEASAKRF--SEI 559

Query: 545 SSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           S   E +  L      +       + + VR+MT+H +KGLE P V L+     +  H   
Sbjct: 560 SEFVEFVDRLIIVHKEMAAMKRDEHADAVRLMTIHKSKGLEFPSVCLIGASEGILPHTSA 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                        G                   +       EE  RL YV +TRA D+LI
Sbjct: 620 LDAERRDDQRPLSG------------------KEDKALDALEEERRLAYVAITRARDELI 661

Query: 664 ICKHSNTSNEKKSNQRTWYD 683
           I         K    R + D
Sbjct: 662 ISSPGFYRGRKAEVSRFFRD 681


>gi|239982165|ref|ZP_04704689.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 1191

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 107/817 (13%), Positives = 215/817 (26%), Gaps = 120/817 (14%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFF 73
             +     L       +    S  +          A+ L++A          F  L    
Sbjct: 118 TYHAFAGRLLTDHGLRLGLEPSTRLLADATRFQLAARVLREAPGAHPALTRSFPDLVGDL 177

Query: 74  LTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           L       ++++T + +     DL   L+ +      +R      +        +     
Sbjct: 178 LALDGELSEHLVTPDRLRHHDEDLLGTLESTPLTNPDLRKLPEVARARHDLAGLV----- 232

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               Y  AK+   ++DF D I  +  L  +      +   + +E   +L+DE QDTS+ Q
Sbjct: 233 --EQYRSAKRDRDLIDFGDQIALSATLADRHPA---VGALLREEFRVVLLDEYQDTSVAQ 287

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++  L          H +   + AVGD  Q+IY + GA    +              G
Sbjct: 288 RILLAGLFG--------HGTGHPVTAVGDPCQAIYGWRGASVANLDDFPDHFP---HADG 336

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              +   L  + RS   +L + + + +                     R    G   L  
Sbjct: 337 TPAARHSLSENRRSGGRLLDLANTMAA-------------------PLRAMHTGVEALRP 377

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                          +            + +     +A  I++++ T T           
Sbjct: 378 ------------APGAERDGIVRCALLDTHADELTWLADRIAHLVATGTP---------- 415

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +I VL R   D        +    D  + V       L     + DL+A+   +    
Sbjct: 416 PGEIAVLCRTAGDFG----AIQSALVDRDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPG 471

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQR------------HETETVYEYIQKFANCGISK 480
            + S V +L  P +     D+  +  +                  + E ++      +  
Sbjct: 472 ANASLVRLLTGPRWRIGPRDLALLGRRARLLVRRERAGGDDPDRRLAEAVEGVDPAEVIS 531

Query: 481 FQHVIKY--------------------------IHELIHIAQFCSPHDFFTLILGAKKGR 514
               +                            + +L   +      D    +L      
Sbjct: 532 LADALDTFLDGSADDELPFSAEARVRYAQLATELRDLR-RSLADPLMDVLHRVLATTGLE 590

Query: 515 QQFISR---FGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI---KRAHSA 567
            +  S          + L  FL+       Q   +SL   +  L            A   
Sbjct: 591 VELSSSPQALAARRRETLSNFLDVAASFAAQEKDASLLAFLGFLRTAAQYEKGLDNALPG 650

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWI 622
             N V+++T H +KGLE  VV +    ++ F  +  ++       ++P         +  
Sbjct: 651 GENTVKVLTAHKSKGLEWDVVAVPGLVAKQFPSEQGREKWTAQPRVLPHSLRGDAATLPD 710

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             +   +  +    + ++     E  RL YV  TR    L+   H     +K++   + +
Sbjct: 711 AGA-LDSKGLKAFTEQMRDHQHTEELRLGYVTFTRPRKLLLGSGHWWGPTQKRTRGPSDF 769

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            +           +        +                 PL  +E             +
Sbjct: 770 LLALHDHCLAGHGETEVWAERPDAAAQNPALAEPTADLAWPLPLDEVALDRRRAAAATVR 829

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                                            +   
Sbjct: 830 AHLDALASGALATSAIEEQAAPDAAVPAHPAPGEPDG 866



 Score = 91.9 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 63/278 (22%), Gaps = 48/278 (17%)

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            D    +                      A  +S      TP E         D + +  +
Sbjct: 885  DWESWTTARPATTPPPVAVTEAVTPATPAATYSAATEGPTPEEARLIHSWDQDLEALSGE 944

Query: 743  LFS----------PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
            L            P     +E   L         +              RG   H  ++ 
Sbjct: 945  LLRARQGTRDVVLPASLTASELMRLAADPAGFAAELARPMPRPPQPAARRGTRFHAWVES 1004

Query: 793  IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEV 849
                           +      +   +E       I    +   +  A         + +
Sbjct: 1005 --------------RFEDVQLPMLDPEELPGHDADIADEHDLEALKEAFEQTEYAHRTPL 1050

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQN-----------IFIFEYKTHHHVPQEIEHIPY 898
             V            + GR+D +   + +             I ++KT H    +      
Sbjct: 1051 GVEVPFQLTLAGRTVRGRMDAVYRLESDTATGTGPQTPVYEIVDWKTSHTRDADP----- 1105

Query: 899  THIAQLSIYEKILKD--SYPNKSLVCLLIYVSEPKVFI 934
                QL+IY     +    P +++    +Y+   +   
Sbjct: 1106 ---LQLAIYRLAWAEHHRLPLEAVTAAFVYIRTGETVR 1140


>gi|282866610|ref|ZP_06275652.1| UvrD/REP helicase [Streptomyces sp. ACTE]
 gi|282558512|gb|EFB64072.1| UvrD/REP helicase [Streptomyces sp. ACTE]
          Length = 1164

 Score =  207 bits (526), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 116/796 (14%), Positives = 219/796 (27%), Gaps = 119/796 (14%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95
             +          A+ L++A          F  L S  L       ++++  +   +   
Sbjct: 141 TRLLADATRYQLAARVLREAPGPYPALTRSFPTLVSDLLALDAELAEHLVRPDELARHDT 200

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
             E L       +   D     +  ++    L L       Y EAK+   +LDF D I  
Sbjct: 201 --ELLGTLAGAKLTNADLRKVPETVEARRELLGLT----RRYREAKRSRDLLDFGDQIAL 254

Query: 156 TNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
           + +L L + +V   +R +       +L+DE QDTS+ Q  ++ +L      G     +  
Sbjct: 255 SAELALTRPEVGTLLRDE----FRVVLLDEYQDTSVAQRLLLSALFGSGPGGD----TGH 306

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            + AVGD  Q+IY + GA    +    +         G   +   L  + RS   +L + 
Sbjct: 307 AVTAVGDPCQAIYGWRGASVANLDDFPQHFP---HADGTPATRYSLSENRRSGGRLLHLA 363

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +                       R    G   L     ++ D               
Sbjct: 364 NGL-------------------ADPLRAMHEGVEALRPAPGAERDG-------------- 390

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                +    L R  A  I  +       ++  +      +I VL R   D P      +
Sbjct: 391 -----TVRCALLRTHAEEIDWL---GDSLAHLVRTGTPPGEIAVLCRTAGDFPR----IQ 438

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
               D  + V       L     + DL+A+   +     + S V +L  P +     D+ 
Sbjct: 439 AALVDRDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLA 498

Query: 455 KICTQRH-----------------------------------------ETETVYEYIQKF 473
            +  +                                           ++    +    F
Sbjct: 499 LLGRRARLLVHHASPDDDTDPDRRLAEAVEGVDPAEVISLADALDTFLDSGGHQDDQLPF 558

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLD 530
           +     ++  +   + EL   +      D    +L       +  +          + L 
Sbjct: 559 SAEARIRYARLATELRELR-RSLADPLMDVLHRVLSTTGLEVELSASPHALAARRRETLA 617

Query: 531 EFLNFTLRNEQ-NSYSSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLESP 586
            FL+        +  ++L   +  L            A     N V+++T H +KGLE  
Sbjct: 618 NFLDVAAGFAAVDGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWD 677

Query: 587 VVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           VV +    +  F     ++       ++P         +    S     +       +  
Sbjct: 678 VVAVPGLVTGQFPSTRSREAWTAQSKVLPHALRGDAATLPDVCSWDAKGL-KAFKDEMTA 736

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
               E  RL YV  TR    L+   H    ++KK    + +             +     
Sbjct: 737 HQHTEELRLGYVTFTRPRRLLLGSGHWWGPSQKKPRGPSAFLDALYDHCAAGHGEIEVWA 796

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
           +    DE           +  PL  +ET        +              +P     + 
Sbjct: 797 DEPGPDEENPVLREREAEQAWPLPLDETALARRRAARDTVLAHLDALAAAPDPEAEAEAQ 856

Query: 762 IDTKGKTNLESLLSDN 777
                           
Sbjct: 857 AGPPEHGEPLYDEEFP 872



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/267 (8%), Positives = 56/267 (20%), Gaps = 30/267 (11%)

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
                          +  D             +   + +    +L   +     +  P   
Sbjct: 911  DRAPGRVPHLPAARVPSDPPDLTPEEARTLASWDRDLDALAGELRRARATVHDVVVPASL 970

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
               +   L         +              RG   H  ++                + 
Sbjct: 971  SATQLLHLADDPDGFARELARPMPRPPQPAARRGTRFHAWVES--------------RFE 1016

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS------VSGKINCPKKDII 863
                 +    E          + +   +         +E +      V           +
Sbjct: 1017 ELPLPMLGPDELPGGDDGDAEIADERDLAELKEAFERTEYARRTPYRVETPFQIVLAGRV 1076

Query: 864  ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LV 921
            I GRID +  +     I ++KT  H   +          QL++Y     + +      + 
Sbjct: 1077 IRGRIDAVYRTGDTYEIVDWKTARHRTADP--------LQLAVYRLAWAELHGLAPEAVG 1128

Query: 922  CLLIYVSEPKVFIIPQNKLNKAFAEIS 948
               +YV   +               + 
Sbjct: 1129 ATFLYVRTGETVRPTGLPGRAELERLL 1155


>gi|225873408|ref|YP_002754867.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
 gi|225793677|gb|ACO33767.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium
           capsulatum ATCC 51196]
          Length = 943

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 93/577 (16%), Positives = 182/577 (31%), Gaps = 100/577 (17%)

Query: 8   SLNESYELIYKDLWP--LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  E  E +   +    L    ++  + +    +      +    + L +       E  
Sbjct: 64  AAKEMAERVDALIGHSTLAKPVLATFHSFCVRMLRRDIEALRIGNEGLTKTFAIYD-ESD 122

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
              L    + +     K +  + +  K    K  +   Q+ +             +S+  
Sbjct: 123 QQSLVKQIMRRMGLDDKQLTPRVVLSKISWAKNHMIDPQEYY------------LQSSDP 170

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                 ++   Y +  +KN  LDF+DL++    LLK     A +R + ++   ++LIDE 
Sbjct: 171 VAERVAHIFEAYRKDLRKNNALDFDDLLLEAVRLLKSS---AEVRERYNRRYQYLLIDEY 227

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+  Q+E+++ L            S   +  VGDE QSIYS+ GA+ + +L  ++   
Sbjct: 228 QDTNRPQYELMKLLAG----------SRHNVCVVGDEDQSIYSWRGADIRNILEFEKDFP 277

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I L  ++RST  IL     V S  E  +G S                 
Sbjct: 278 N--------AQTIRLEQNYRSTQVILEAAGAVVSRNEQRKGKS----------------- 312

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               LW        S+       +    D   +       A  IA +I   +      + 
Sbjct: 313 ----LW-------TSREGGSLIGFYEAPDGENE-------ALFIADSIQKYLRKAGESAE 354

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             +         VL R    + L+    R     Y I       F   +   IKDL++  
Sbjct: 355 QPRA-------AVLYRTNSQSRLVEEALR----RYGIRYTMVGGFSFYERAEIKDLLSYL 403

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           + + +  D ++   ++ +P     +  +  +     ET T         +      + + 
Sbjct: 404 KLVQNPNDSIALQRIVNTPARGIGKTTMETLERIALETGT---------STWNGIVRALR 454

Query: 486 KYIHELIHIAQFCSPHDFFT--LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           + +     +    +          L A    ++  +    E  +     ++     E ++
Sbjct: 455 EKLLPSRALVALDTFVRLIEDARALLAPDFAEKLAADVAAESGE-----MSDAAEPESDT 509

Query: 544 YSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVH 578
             S      E                N   +  +T H
Sbjct: 510 DFSFAAAADETTSPDASADTGFDFGDNAQGILALTPH 546



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 52/187 (27%), Gaps = 41/187 (21%)

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS 545
                     +  +    ++      +        E    I+ L E  N     ++    
Sbjct: 607 AAFRKPGDPATLPELIKFLIDRSGYIRALEEEATPEAFSRIENLKELANAAQDAQERG-- 664

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             + L   L+                V +MT+H AKGLE P+V L      +F H     
Sbjct: 665 --ETLNEFLDHAALVSDTDQFDADARVTLMTLHAAKGLEFPMVVLAGMEEGLFPHSRTLT 722

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                               +  EE  RL YVG+TRA D LI+ 
Sbjct: 723 DP----------------------------------NQMEEERRLCYVGLTRAMDSLILT 748

Query: 666 KHSNTSN 672
           +      
Sbjct: 749 RARYRRR 755


>gi|218887057|ref|YP_002436378.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758011|gb|ACL08910.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 789

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 89/619 (14%), Positives = 180/619 (29%), Gaps = 122/619 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + A Y   ++++ +LD++D      +L +     A +         +I++DE QDT+L+
Sbjct: 187 RIAAAYHAYRREHGLLDYDD---LLFELERLLRERADVLDWCRARFRYIMVDEYQDTNLV 243

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++  L  +             + AVGD+ QSIY+F GA+ + +L   ++        
Sbjct: 244 QARLVHLLAGE----------GGNVMAVGDDAQSIYAFRGADVRNILDFPKLFPA----- 288

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II+L  ++RS   +L + + + +    A           +  ++R G      + 
Sbjct: 289 ---AQIIKLEENYRSVQPVLDLTNAILAEAPQAYRK--------KLFAAREGGDRPQVVR 337

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                        S    A  +   I   +           R  
Sbjct: 338 PL---------------------------SDLTQASLVVSRIVEFL-----------RSY 359

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              DI VL R    +  +      L     +          ++   +KD+++  R +L+ 
Sbjct: 360 PPHDIAVLFRAGYQSYHVEVQLNKL----GVKFRKYGGLRYSEAAHVKDVLSYARLVLNP 415

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D  +F  +              K+     +           A     + +  +  +  L
Sbjct: 416 LDLPAFQRIAAMSK-GVGPKTTLKLYDVARQGNPEA---TSRACLRYPELRADLDLLDGL 471

Query: 492 IHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                  +P      ++   K R +             L++ L              ++L
Sbjct: 472 RKRPH--TPTSLLEEVMEHYKPRMEAAFPDDWPRRQQGLEQLLQIAASY--------RDL 521

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              +             N + V + T+H+AKGLE   V L+D   + F  +H        
Sbjct: 522 DLFISDLSLEDPGEEEENRDSVVLSTIHSAKGLEWGAVLLIDLVEERFPSRH-------- 573

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHS 668
                                        +    EE  RL+YV  TRA D   L +    
Sbjct: 574 --------------------------AIARAEDFEEERRLMYVACTRARDHLCLFVPASL 607

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
            +  +  +        V +   +         +  + + +    +               
Sbjct: 608 YSRGDGGNQPAVPSPFVRELPAHLFDEMHESYSGGLMRRDAPNGQTGQRGAGFGGGRSGG 667

Query: 729 TIKQLMDEQKIPKKLFSPI 747
                 +       +  P 
Sbjct: 668 GGFAQGNRFDGAPGIPRPP 686


>gi|331268997|ref|YP_004395489.1| superfamily I DNA helicase [Clostridium botulinum BKT015925]
 gi|329125547|gb|AEB75492.1| superfamily I DNA helicase (rep-like helicase) [Clostridium
           botulinum BKT015925]
          Length = 730

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 96/554 (17%), Positives = 191/554 (34%), Gaps = 111/554 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K KN +LDF+DL +    L  K      +         +ILIDE QD   IQ 
Sbjct: 224 YRTYEDYKLKNNLLDFDDLQLRCKSLFMKNI---KLLNGYRNFFKYILIDEFQDCDEIQI 280

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           ++++ L ED            ++FAVGDE Q IY F G++P+ ++              +
Sbjct: 281 DILKLLNED-----------NSIFAVGDEDQCIYGFRGSKPECMVNFDTHF--------K 321

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
           +   I L  ++R    ++ + D +    +       ++                      
Sbjct: 322 EGKKIFLTTNYRCPKSVVNISDNLIKNNKMRNDKIFNA---------------------- 359

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                 ++    + +  +Y D   Q       A  I+  I  +               + 
Sbjct: 360 ------NKEEMTKINVMNYIDERNQ-------ADSISINIMKL---------NSVSGYKY 397

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQE 432
           +D  ++ R   ++  I           KI     D+     +H   KD++A  +  +   
Sbjct: 398 EDNAIIYRTNVESRSIIDSF----IRKKIPFKLLDKEYNFFEHFICKDIIAYLKLSIDCA 453

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D  SF+ ++  P    S+ ++ K+    +  +  +E ++   N    + +  I  I + I
Sbjct: 454 DKESFLRIINRPFRYISKVNLEKVKK-NNSGQDCFEILKDNENIPPFQLKK-IDEIKKDI 511

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV-LDEFLNFTLRNEQNSYSSLQELI 551
                 S       +L   +  +          +D+   E +     +    Y+++   +
Sbjct: 512 QYLNKISLAGAINSVLNNLEYYEYLKDYSIKFKMDISELEEILEEFISASKDYNTIITFL 571

Query: 552 SELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + + +    IK   +    + V + T+H  KG+E   VF+++   +   H +        
Sbjct: 572 AHINEVEYEIKNNKNDEQKSGVILSTIHGVKGMEFKNVFILNCNEENIPHINSI------ 625

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                         ++  EE  RL YVG+TR  + L +C  ++ 
Sbjct: 626 ------------------------------ETNIEEERRLFYVGVTRTIENLWLCICNDI 655

Query: 671 SNEKKSNQRTWYDM 684
             + K   R   + 
Sbjct: 656 RGKTKKTSRFIEEC 669


>gi|154502276|ref|ZP_02039336.1| hypothetical protein RUMGNA_00086 [Ruminococcus gnavus ATCC 29149]
 gi|153797155|gb|EDN79575.1| hypothetical protein RUMGNA_00086 [Ruminococcus gnavus ATCC 29149]
          Length = 625

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 95/563 (16%), Positives = 196/563 (34%), Gaps = 126/563 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K +   YEE K+ N +++F+D +   N +        +   K      +IL+DE QD S+
Sbjct: 163 KQIYKTYEEYKEINSLIEFDDFLNMANKIFDTD---YYTLEKYRNIFQYILVDEFQDISI 219

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q  ++R L            + +    VGD  Q+IYSF G + + +L            
Sbjct: 220 SQALLLRKL------------NTKNTMIVGDPLQAIYSFRGGDSRFILNFDTDY------ 261

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +   +I L  ++R + DI+   +K+     ++Q  +   +                  
Sbjct: 262 --KDVKVINLNTNYRCSKDIVFTANKLALSIPDSQHKNYVES------------------ 301

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
               +S  ++   P+   +   ++              +A  I  +          K + 
Sbjct: 302 ----ISNKENFQIPELRHFPDDYEECL----------WVASKIGEL----------KFKG 337

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               DI +L R       +        +D  I+    D    T+   IK +++  +  L+
Sbjct: 338 YDYNDIAILARTNAQLQKLESTL----HDEDIAFEIVDGKTFTELPEIKLIISYFKLALN 393

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYI---QKFANCGISKFQHVIK 486
             D+ SF  +   P     +  + ++         ++Y  +    +           +I+
Sbjct: 394 TNDNESFSYLYNKPNRWLDKKFLKEVTDNSFKRNISLYNSMFTIDRRNWRFKKGIDEIIE 453

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN------EVIDVLDEFLNFTLRNE 540
            I+ L +  Q  +  D    +       +       +      E ID L+ F N   +  
Sbjct: 454 VINYLQNN-QNSNISDLVRFLRNRLDIDKFVTKGKQSDDGSYIEQIDNLNSFENICSKY- 511

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               SS++E +S +++    +    + ++++V+++T+H +KG+E PVVF++    ++  H
Sbjct: 512 ----SSIKEFVSYIDELNTEM---ENKDNDKVKLLTIHKSKGMEYPVVFIIGCNEEILPH 564

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  K    ++  RL YV +TRA  
Sbjct: 565 --------------------------------------YKNENVDDERRLFYVAITRAEK 586

Query: 661 QLIICKHSNTSNEKKSNQRTWYD 683
           +L +      + + K       D
Sbjct: 587 ELYLSYVDLYNGQTKLISSFIKD 609


>gi|67526679|ref|XP_661401.1| hypothetical protein AN3797.2 [Aspergillus nidulans FGSC A4]
 gi|40740815|gb|EAA60005.1| hypothetical protein AN3797.2 [Aspergillus nidulans FGSC A4]
          Length = 949

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/802 (13%), Positives = 223/802 (27%), Gaps = 176/802 (21%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           I + L P    +   +   V+  +                   ++ + ER + L      
Sbjct: 25  ILQVLAPPGSGKTKTLTSRVAYLLAHDGYRPQDVICCTFTIKASREMRERLAKLRIVKRL 84

Query: 76  QKF-TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           Q    P          K      + +   Q++  K+ +     +              + 
Sbjct: 85  QLGIQPNTARARISHQKAHGVSPDDVAAKQNKISKLLEHREFVQ--------------VY 130

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             YE     + +LD++DL++   +LL+K         K    +  +L+DE QDT+ IQ++
Sbjct: 131 REYESELATSNLLDYDDLLLRCAELLRKHP-------KCVSNVQVVLVDEFQDTNQIQYD 183

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++  L           S  R +  VGD  QSIY F  AE + + R +R+ +         
Sbjct: 184 LMNLLA----------SWNRRITVVGDPDQSIYGFRSAEIENLKRMQRLYRN-------- 225

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             ++ L  ++RS+  IL     V     +        T T                    
Sbjct: 226 TEVVLLEDNYRSSGSILKSAQDVIEQDLSRPAKKLQPTHTFGTLPVLRKLP--------- 276

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                     SA   A+ +   I   I           ++++  
Sbjct: 277 --------------------------SAEDEAQWLVLEIKRCI-------VLTGKLLKYS 303

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L+R    +  I          + +           D + +K L+   R I   E+ 
Sbjct: 304 DFAILLRSASLSRQIESAM----GKHGVPYRMVGGQRFFDRVEVKLLLDYLRVISHPENS 359

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI-----------SKFQ 482
            + + ++  P     E+ +  +     +  + +++YI+  A                   
Sbjct: 360 EALLRIINVPSRKIGEETVKMLLNGAEKAGKPLWDYIKDVAQGRRSTEKAMSKPTNQGLS 419

Query: 483 HVIKYIH----ELIHIAQFCSPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNF 535
            ++  I     +L       +P     +++     R+   +            ++E ++ 
Sbjct: 420 SLVGLIEYSREKLRQCVDRSAPRRLLEIVMKRLSFREFITATYGSNDENRWANVEELMSQ 479

Query: 536 TLRN-------------------EQNSYSSLQELISELEQYPP-------TIKRAHSANH 569
                                  +Q S+   + L   L                      
Sbjct: 480 ADDATAADESEQDENLPEIAGLTQQESHPGEEALSRFLANVALSTEVQPKEETEGEDQAQ 539

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            +V I T+H AKGLE PVVF+      +  H                             
Sbjct: 540 EKVTISTIHAAKGLEWPVVFIPAAYEGIIPHS---------------------------- 571

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS-------NQRTWY 682
                     +    +E  RLLYV MTRA   L +      + E           Q    
Sbjct: 572 ----------RAEDSDEERRLLYVAMTRAQALLYLSYPLRQARENAETNVTSFLPQELIT 621

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             +       +      + + + ++   A            +  ++  +   +   +  +
Sbjct: 622 SRLRPVGPKLDEKVVYGIADILRRERPSAVAMLEGLDSLPSVYDDQWTEDGRESPGMIIR 681

Query: 743 LFSPIKNDINEPYILNPSTIDT 764
                  D            + 
Sbjct: 682 WDGSRATDDEPSSKRRRYEREQ 703


>gi|237744615|ref|ZP_04575096.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 7_1]
 gi|229431844|gb|EEO42056.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 7_1]
          Length = 1074

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 133/867 (15%), Positives = 288/867 (33%), Gaps = 125/867 (14%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            N + +  + +  +      +   E   +        +         L+  +   Y+  K 
Sbjct: 305  NKLKKASDAEHKEYINARHEELREI--LSKEIFNEVLIPYEEKIFELSSEIYNLYDSFKI 362

Query: 143  KNCVLDFEDLIINTNDL-------LKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWE 194
            ++    F D+ I T          L+  +    I ++ +D  I  I IDE QDTS++QW+
Sbjct: 363  RDKKFTFNDIAIYTYMAIFNKNNTLRDENGLTDIFFETLDMNIEAIFIDEFQDTSILQWK 422

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++   T+            +T+  VGDEKQSIY +   E +     + I + +       
Sbjct: 423  ILYEFTK----------KAKTVICVGDEKQSIYGWRDGEKRLFENLETILEAKED----- 467

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                 L  S+RS  +I++  ++ F   E                         ++ W+  
Sbjct: 468  ----SLGKSYRSDRNIVSYCNQFFKAIEK------------------------IEDWKFP 499

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
             S+ +S+ +   ++                            +  +TI     K+     
Sbjct: 500  TSEVNSKNDGYVKAICIKDLQAEIGDEEQ----------KKELNINTILLQELKKFYPYD 549

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            ++ ++ R   +   I  L    K    I  + N+   ++++  I +   L ++++  E++
Sbjct: 550  NVAIIARTNTELSEIANLLEDEK----IPYILNNEKNISEYSGIFECFELLKYLV-YENE 604

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETV--YEYIQKFANCGISKFQHVIKYIHELI 492
            L+    + SPL NF  D+I  +   + E  +   +     F N    K    ++ I  L 
Sbjct: 605  LALFNFISSPLSNFGTDEIEILLKNKKELFSYINFSQDNDFINSLDKKIIRFLEKIVFLK 664

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
               +  +  D    I+   +    F      +    + +F   T          L+ L  
Sbjct: 665  KNYKNFTVQDLIFEIIKKFQFIDYFNKDNEVK---NIYDFYLLTNYYSSI----LELLND 717

Query: 553  ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
               +         ++    V ++T+H +KGLE    F++    +  +        +    
Sbjct: 718  Y--KENKLSLSDTNSEKKGVELVTIHKSKGLEFKTTFVIKNSKKSKTDDIDFLFEMNDHY 775

Query: 613  NDDPGIPIWIPQ-SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            ++                    + I++  K  +EE     YV +TR  + LI+       
Sbjct: 776  DETVFSLFCKKGYKAILETCFEERIENYDKKIKEEEINNFYVALTRPKNNLIVIYEDRLF 835

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
             +K  N+ +  ++     + ++   +  + +     +   + +S  +  N    +E    
Sbjct: 836  EKKSLNEFSSEEL--KGINLEDISFEKSVIDDFFDCKIGEFSFSEKNSNNEDTAKENLES 893

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
             L + Q       S I  +  E   +           + + LL   +    G+++H   +
Sbjct: 894  DLFNSQPY---FISSIYENEKETEKI--------EINDSKFLLETEEKRMTGILVHYFFE 942

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSCD---SY 846
             +    + + +   T    K    +  ++   +    +I   L         S      Y
Sbjct: 943  NLKYGTDEEVEFSKTLCYKKYLSYFGEEKLNKIFSKENIEMFLTKD--KEIFSKKWDYIY 1000

Query: 847  SEVSVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHI 901
            SE       +  +K      RID++ I         I+I ++KT                
Sbjct: 1001 SEY---VLYDYEEKKEY---RIDRLMIKDNGDGTGEIYIVDFKTGGKDES---------- 1044

Query: 902  AQLSIYEKILKDSYPN---KSLVCLLI 925
             QL  Y+ +LK ++      ++    +
Sbjct: 1045 -QLKTYKDVLKKNFEELQKYNIRTKFL 1070


>gi|213864699|ref|ZP_03386818.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 549

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/509 (15%), Positives = 165/509 (32%), Gaps = 86/509 (16%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        ++++         QK    G         +
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 459

Query: 488 IHELIHIAQFCSPH---DFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN---- 539
           + E+  +A+        D    I       +   S    E  +  +++  ++        
Sbjct: 460 LGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGN 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSAN 568
           E +   +L ++++         +      
Sbjct: 520 ELDEPMTLTQVVTRFTLRDMMERGESEEE 548


>gi|239931604|ref|ZP_04688557.1| superfamily I DNA/RNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291439976|ref|ZP_06579366.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC
           14672]
 gi|291342871|gb|EFE69827.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC
           14672]
          Length = 921

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 112/804 (13%), Positives = 217/804 (26%), Gaps = 159/804 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR-----DVSAWIRYKIDQEINHILIDE 184
                  Y +        D+  ++ N   LL        +    ++  + + + ++++DE
Sbjct: 172 VADGLDKYMQLLSDRAYFDYTAILHNAAVLLNDDNDEGDESVLDLQRHVKETVKYVVVDE 231

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+ +Q ++IR LT               L  VGD+ Q+IY + G+    +L  +   
Sbjct: 232 YQDTNPVQEQLIRGLTRH----------GANLCVVGDDDQTIYQWRGSAVDNILTIEDRY 281

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        + L  +FRS++ I+ +   V                           
Sbjct: 282 PN--------VHRVTLNENFRSSSAIVDLARHV--------------------------- 306

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              V+        + +      +++        +       A  +   +  + G      
Sbjct: 307 ---VERIPAGERLNKAMTAAGHQTFERGDLLAQEFPDTEAEATWLVERMERLRGVPFHDR 363

Query: 365 NG-KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
            G + R +   D  VL R  K                 I  V      L +   ++  + 
Sbjct: 364 EGSEPRGLDWSDFAVLFRSVKADAG---PLVEELRSRGIPYVIKGLTKLFETPEVQAAVT 420

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
             RF+    D+   V          +E D+                    +      F  
Sbjct: 421 CFRFVAGLADEQDVVDAWVDAGVGLAEGDVRAGLPVLTAAMQWDASKPWDSTTLQGVFLE 480

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
            ++ +  L                       ++  +  G  V   L  F       E+  
Sbjct: 481 FLEAVE-LRE---------------------ERVPNERGELVYYNLGRFSTAIGDFERIH 518

Query: 544 YSS-----LQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDT 593
            +S            +E   P        +      N V I TVH AKG++ P VFL   
Sbjct: 519 LTSEPQQRFDAFAKWVEHQAPDYYEESDGDNGYAQPNAVVIATVHQAKGMQWPAVFLPAL 578

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               F       + +   + ++        +                  T+ +  RL YV
Sbjct: 579 RKNTFPASGRGGLGVFHVVEEELIPGAARYRG-----------------TEADERRLFYV 621

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +TRA   L +    +     K     + +                   +          
Sbjct: 622 AVTRAQKYLALSFAPSDKRTGKKRSDFFNE------------------ATGVHTVLTREV 663

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
             +     TP  R  T + +M    +      P    +   Y               +S 
Sbjct: 664 IPSPDDRLTPTPRRGTPEVVMSFSDLKYLFECPYSFKLRLLY-------------GFDSP 710

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLP-------EHKRKNFITSYCTKNA--KLWPAKEYKNL 824
           L        G  +H ++  I             + ++ +  +       K    +     
Sbjct: 711 LQKELG--FGKSLHDVMAEIHKRAIEGDIATPEEAEDLVDRHLNLPFANKAAADQLRPAA 768

Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEY 883
             ++ R L        +    YSE  V      P   + ++GR+D I  +      + ++
Sbjct: 769 ETAVRRYL--ERHGATLHQTRYSEQPVEIH---PVPGVTVTGRVDLIKRLDTNETSVVDF 823

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIY 907
           K+      E          QL +Y
Sbjct: 824 KS-----SERAQAEDLTRDQLHLY 842


>gi|308062822|gb|ADO04710.1| putative recombination protein RecB [Helicobacter pylori Cuz20]
          Length = 949

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 137/866 (15%), Positives = 256/866 (29%), Gaps = 169/866 (19%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T  K        KK  D    L+   +E      R+          A       
Sbjct: 245 FLNSSLTWLKKKSEYRHFKKFKDEIPTLESECEEIENDLKRYYEA----RESALFKKFPK 300

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 301 FIQLYDKATSKIQALDFDAIKDKVHALLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSL 360

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY F G+                 +
Sbjct: 361 NDYKILAPFIDEIKAGIGQTKWHRSVFFVGDVKQSIYGFRGS-----------FSSLFES 409

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS+  I+  V+ +F         +       +  S++  + G V++
Sbjct: 410 VSKDFYHDNLQFNHRSSPLIINYVNTIFKKAYQNSPTAYLEQKYPKASSNKHARDGYVKV 469

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 470 SLVA-------------------------DERELLLEQILQEAKNLLEH----------R 494

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L     D   I    +   +  + S   + +        I            
Sbjct: 495 IDPKDITILCATNDDALEIKNYLQENLSAIRPSTESSAKLSQFVESKIIKNALEYALAEE 554

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   +     + E+V  ++ K                  
Sbjct: 555 PYKPFYKHSVLK--LAGYLHDDAIALAGFNPKKESVAGFVWK------------------ 594

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                           +        Q          D  DEFL      E    +S    
Sbjct: 595 -------------VMELFELYGECAQICLELAVGCEDA-DEFLEKL---EAKEIASFNAK 637

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +                    +IMT+H +KG++ P V + +   +  S+   + +    
Sbjct: 638 GA--------------------QIMTIHKSKGMQFPYVIVCERLGKPKSNNSNQFLEEYD 677

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                        +     +  +  +   + +   E   + YV  TRA   LI+      
Sbjct: 678 GTELTCLYYRMKNREMVDKD-YARALDKEEAAKDHEETNVYYVAFTRAELGLIVVAKDKD 736

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             + K   +             E      + +S  +    +     H       E EE  
Sbjct: 737 QKKDKKESKNKGMREKLDLAPLEEGAIAPVISSQKEPLIPSVVIKPHAYGEQVQEIEEE- 795

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                                       PS  +            D +  N G+ +HK L
Sbjct: 796 ----------------------------PSDYEKNN---------DQEAINFGIALHKGL 818

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EV 849
           +       +  K  +  Y   +   +   +Y+ L  S+     +  + T     +   EV
Sbjct: 819 EY--QYAYNIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQTLFKNLALRGEV 875

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           +         + ++   RID +   +   +++ +YK+  +          +H AQ+S Y 
Sbjct: 876 AF------LFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSHKAQVSHYA 920

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFI 934
             L+   P+  +   +IY +  ++  
Sbjct: 921 AFLQTQAPHFKIQAGIIY-AHKRLLE 945


>gi|218780684|ref|YP_002432002.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
 gi|218762068|gb|ACL04534.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01]
          Length = 638

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/547 (17%), Positives = 172/547 (31%), Gaps = 117/547 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   Y   K +  ++DF+DL+++   +L        +  K   + ++I++DE QD
Sbjct: 174 DILDEMYTQYALTKSQENLMDFDDLLLHMRIMLATEPEIRDVIAK---KYDYIMVDEYQD 230

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+LIQ +++R L              + +  VGD+ QSIY F GA  + ++R   +    
Sbjct: 231 TNLIQADILRYL----------GEGHQNVMVVGDDCQSIYGFRGANFENIMRFPDVFP-- 278

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    II L  ++RS   +L V +K+          +                   
Sbjct: 279 ------GTKIIRLEENYRSYQPVLDVTNKIVKQATRKYSKTLF----------------- 315

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                       +          S  D   Q        + +   +  +   D       
Sbjct: 316 -----------TNLQGGAAPVLVSTRDENSQS-------QFVVDEVKRLQSQD------- 350

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I VL R    +  +            I  V    F   +   IKD +   R 
Sbjct: 351 ---VPLREIAVLFRAGYQSFDLEVEL----TRAGIKFVKYGGFKFMESAHIKDALVHLRI 403

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
                D LS+   L   L          +  +      +     K A    S F  +   
Sbjct: 404 AAFPTDKLSWHRALL-LLNKVGPKTAQTLSDKICSGPGL--AAVKPAPSYKSGFNALRDL 460

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I ++          D    +L   +   +       +    LD+ ++   R      + L
Sbjct: 461 IKDISR--PGQKVADVGKKVLEYYRPYLESNFDNWPKRQKDLDQLVSMMERY----GADL 514

Query: 548 QELISELEQYPPTIKRAH-----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            + I ++   PPT           A  + + + T+H+AKGLE   VF++ T    F  + 
Sbjct: 515 AKFIHDVTLEPPTSTVEDVLAVGEAPPDRMVLSTIHSAKGLEWEAVFVIWTLDGRFPSRQ 574

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                +  + EE  RL+YV  TRA  +L
Sbjct: 575 AV---------------------------------AKEGESLEEELRLMYVAATRAKKEL 601

Query: 663 IICKHSN 669
                ++
Sbjct: 602 FFVHPTD 608


>gi|325002209|ref|ZP_08123321.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1]
          Length = 815

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 109/735 (14%), Positives = 218/735 (29%), Gaps = 102/735 (13%)

Query: 2   KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
           +    L+   +    +     L       +    +  +     T     + +   +    
Sbjct: 103 RRAALLAGEPTVSTYHAYAGRLVGEHALRLPAEPANRLLGPTATWQLAHRVVSTWAADLE 162

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD-LKEKLKKSQDEFIKIRDRFNTYKMF 120
           I+   + ++ + L+      ++++     ++    +   L+ +     +  +    YK  
Sbjct: 163 IDRVPATVTGYLLSLAGELGEHLVEPADVERLTARMLPVLEHAPPGKRQRAEPSAGYKAR 222

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +          L   +   K+    +DF D +     + +       I      +   +
Sbjct: 223 IAGQRMRLELLPLIEEFARRKQAEQAMDFSDQMALAARIAEADPEVGRI---ERGQYRAV 279

Query: 181 LIDEVQDTSLIQWEVIRSLTE--DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           L+DE QDT   Q  ++R+L         +      R++ AVGD  QSIY + GA    + 
Sbjct: 280 LLDEYQDTGHAQRVLLRALFGVPPGLAPEPEEPEHRSVTAVGDPCQSIYGWRGASAGNLA 339

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
           R +       T +G    +  L  SFR+ A++L + ++V      A G            
Sbjct: 340 RFRTDFP---TPSGGPAPVHGLLTSFRNPAEVLALANRVSEPLRTAPG------------ 384

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                      +       D        + L   +A  I+    
Sbjct: 385 -------------------------AVRVGELRPLDGAGPGDVRAALLPDVAAEIAWAAD 419

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                 +      +     VLVR+R D             D ++ V       L     +
Sbjct: 420 GIASRWHAGADEGEPPTAAVLVRRRSDM----DALAAALRDRRVPVEVVGLGGLLSTPEV 475

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY--------- 469
           +DL++  R +       S V +L  P +     D+  +  +  E                
Sbjct: 476 RDLVSALRVVTDPLAGPSAVRLLTGPRWRLGIADLAALWQRARELVPSRPARPGPLGPEE 535

Query: 470 -------------------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                                      +++  G  + + + + +  L   A      D  
Sbjct: 536 LALGALPGDEAEQAGLADALDDPGEPDRYSQAGFDRIRRIGRELSHLRARA-AAPLTDLV 594

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI-- 561
             +        + ++R G      LD F +            SL  L+  L+        
Sbjct: 595 ADVERTLLLDVETMARPGPTGRAHLDAFADVVADFAAGADVPSLPALLDYLDTAEQAEEG 654

Query: 562 --KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP--------- 610
                   + + V+I+TVH AKGLE  +V +    +QVF  + +    +           
Sbjct: 655 LTPGEVEVSPDRVQILTVHAAKGLEWEIVAVPHLVAQVFPGRKMSGSWLKDPSDLPVPLR 714

Query: 611 ---SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                     +P      K     + D    L +    E  RL YV +TRA   L++  H
Sbjct: 715 GDADDLPGLDLPPPGADRKQVEQALDDHDDALDERRLAEERRLFYVALTRAERTLLVSGH 774

Query: 668 SNTSNEKKSNQRTWY 682
              +  ++    + +
Sbjct: 775 RWPATGERPKDPSVF 789


>gi|119715744|ref|YP_922709.1| UvrD/REP helicase [Nocardioides sp. JS614]
 gi|119536405|gb|ABL81022.1| UvrD/REP helicase [Nocardioides sp. JS614]
          Length = 1060

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 123/951 (12%), Positives = 273/951 (28%), Gaps = 92/951 (9%)

Query: 8   SLNESYELIYKDLWP-LPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEER 65
           +  +  + +   L   +     S  + +    +   +P  L +    L  A +   +   
Sbjct: 62  AAEQLRDRVTARLGRTMSTTMSSTFHSFAYALIRRYSPAELYEAPLRLLSAPEQDVVLRE 121

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
                   +    +  + + T+   ++   +  + ++   + + ++       + +   A
Sbjct: 122 LLTDHPESVVWPDSLARALGTRGFAREVHSVLSRAREKGLDGVALQALGEAEGLPEYVAA 181

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            L         Y          D+ DLI            +   R ++   I  + +DE 
Sbjct: 182 GL-----FLDQYLTNLDSQGATDYADLIRRATI------EAETHRDELRARIGAVFVDEY 230

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT   Q  ++R+L  D           R L  VGD  QSIY F GAE + +L       
Sbjct: 231 QDTDPGQVALLRALAGD----------GRDLVVVGDPHQSIYGFRGAEVRGILEFPTAFP 280

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG-- 303
           +     G    ++ L  + R    +L    +V         + E++ +      ++    
Sbjct: 281 R---TDGAPADVVALRTTRRFGPRLLIASQRVAGRLALPGSIPEEARSAFLAPEAQPNPL 337

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---ARRIAYTISNMIGTD 360
             G V +      + +++            D +P +  A ++      I      +    
Sbjct: 338 GDGRVLVRTFDTERAEAEHLADLLRRAHLEDDVPWDQMAVLVRSGRTSIPPLRRALGAAG 397

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                    V   +D  VL        ++   TR   ++ ++  V  +     D    + 
Sbjct: 398 VPVEVASDEVPLVRDPAVLPLLDALRAVVDLDTR--PDEGEVEHVAPENGWSLDPARAEG 455

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           L+      L   D       L++      + +     T R     V             +
Sbjct: 456 LLLGPLGGLDAGDLRRLARRLRTREKEQGKAEARTPRTSRDLVRRVVVEPGFLDGLDGPE 515

Query: 481 FQHVIKYIHELIHIAQFCSP----HDFFTLILGAKKGRQQF---------ISRFGNEVID 527
                     L+   +         +    +        +           +R  +  +D
Sbjct: 516 VVRARALAQLLLDAREALRVGASAEELLWTLWSRTGWPARLRRSVDLGGGAARRAHRDLD 575

Query: 528 VLDEFLN-FTLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
            +    +     +EQ  +  ++  ++ L  +Q P        A    VR++T H AKGLE
Sbjct: 576 SVCALFDVAARADEQRDHVGVRAFLATLVQQQIPADTLAERGARGAAVRLLTAHRAKGLE 635

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             +V +       +     +   +      + G+   +                      
Sbjct: 636 WRLVVVAHVQQDGWPDLRRRSTLLQADRIGEHGVVPPVSTR----------------ELL 679

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFHNDERVKKIKLTNS 703
            E  RL YV  TRA  +L++   ++  +E +   R   ++ V          + + L   
Sbjct: 680 MEERRLFYVACTRARQRLVVTAVASPDDEGEQPSRFLDELGVGVERVVGRPPRPLSLPGL 739

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK--------NDINEPY 755
           + +      +  T  P      R             P   +             D  +P 
Sbjct: 740 VAELRRTLADPETSEPLREAAARRLARLAPEVRIADPSSWWGTRAATRSVEPIRDPGQPV 799

Query: 756 ILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFTLPEHKRKNFITS 807
            ++ S ++       +  L              N G ++H L Q +           +  
Sbjct: 800 PVSASVLEAVAVCPTQWFLEREAGGSARAHQSANLGELLHALAQRVAAGELEPAVEVLME 859

Query: 808 YCTKNAKLWP---AKEYKNLLLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCPKKDI 862
           +                      +   +   +     +      +E   +  +     + 
Sbjct: 860 HVDAVWDRLDFRTPWSRAREHDRVRAAIGRFLQWHLANPRELIATEAPFTTVVALEGGEQ 919

Query: 863 I-ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           + ISG  D++ +    ++ + + K+    P         H  QL +Y+  +
Sbjct: 920 VKISGYADRVELDADGHVVVVDLKSGRTKPSN--RAVEGH-VQLGLYQYAV 967


>gi|257067799|ref|YP_003154054.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
            domain-containing [Brachybacterium faecium DSM 4810]
 gi|256558617|gb|ACU84464.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
            domain-containing [Brachybacterium faecium DSM 4810]
          Length = 1104

 Score =  207 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 130/929 (13%), Positives = 269/929 (28%), Gaps = 94/929 (10%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
                        +                 T+ +    L+   +      R        L
Sbjct: 202  SALDAALTALEAEQRSAEAGEGPFSVKTAGTVRRHLDALEALRREVADPVRAPWSRWAKL 261

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK--IRDRFNTYKMFKSTLASLTLAKY 132
                + +      +    S D+   L  +     +  + +      +       +  A  
Sbjct: 262  AAVASAKAADPEAKGYAYSKDVDHALLGAASTIAEELLENPVLQADVRALITLVMETAAD 321

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                Y   K +  ++DF D  + T  L++    +  +   I      + +DE QDTS +Q
Sbjct: 322  SLEAYRRYKDELGLIDFIDQEVRTLALVRDSARAREV---IRSRFRLLAVDEFQDTSPVQ 378

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
              +  +L+E                 VGD KQ+IY F  A+P  +L          TN G
Sbjct: 379  LALFLALSELVEDK----------IWVGDPKQAIYGFRDADPALMLGIIGELDSGRTNLG 428

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSI----PENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                + +L  S+RS   +L +V++VF          + + + +      R++   + G +
Sbjct: 429  AAA-VRDLEHSWRSQQPVLDLVNEVFPQVFPELPRHRVVMDAAEPATARRAADGHRPGRL 487

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            + W   V +  +                         A  +A  I  ++  +        
Sbjct: 488  EAWLPQVPKRLTHGQ---------------------HATAVADGIVELLEDEGTC----- 521

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  DI VLVR  +    +        +D  +   G +   +      + + A     
Sbjct: 522  ----PADIAVLVRSNRRAAEVVQAL----SDRGVPATG-EGVGILASREGRLVRAALAVT 572

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L   D L+   ++     + +    F+  T   + E       ++          V+  +
Sbjct: 573  LDLSDTLALTELVDQLPDHAAHGRWFEQLTAAPDREARRGVFAQWWQDP------VLAGL 626

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSS- 546
             EL       +P +  T ++ A    ++  +     + +  LD       +    + +  
Sbjct: 627  RELREDCISLTPVEMITALVDALDLPERIRAWSTPDQRLRTLDALRKVAAQYADRARADS 686

Query: 547  ----LQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFL---------- 590
                L  L  EL+     P +    +     V + T+H AKGLE   V +          
Sbjct: 687  APITLTGLRIELDAVEHGPDLSGMAATRPGAVWVGTIHGAKGLEWSHVVVMLDHSPTERS 746

Query: 591  --VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                          +       S    PG+       +      +   +       EE  
Sbjct: 747  QTAGAFVVPAPQLDVTAPLAGRSPRYWPGVLPRHAPLQDALADSAHARRRAHAEQ-EESG 805

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            RL YV +TRA+D  ++  + +             D                   +    +
Sbjct: 806  RLQYVALTRAADVTVLSGNGSAPVLDALVPAAEADAPPLLTWEAGGAAVHVRGGASLPAQ 865

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN----DINEPYILNPSTIDT 764
              +          T   R   +         P++   P        +     L       
Sbjct: 866  VRSPRGELPPDAATYRARRSPLAATDLTGPAPERPGGPAARFQASGVASAEELGTVGAPR 925

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                 L       Q    G  IH  L + +  L   +R+        + A          
Sbjct: 926  SIGRRLVPDTGGPQWERVGEAIHAYLALPLPHLTAVQREAAAARLVQRWA--VSRAVDAA 983

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID-QISISQQNIFIFE 882
            +L          +       +  +E  ++      ++D ++ G ID  + +    I + +
Sbjct: 984  VLQEAGEAWAAFLAAEFPGAEELTEQPITW---WNEEDQVMEGWIDTLLRLPGGEIVLVD 1040

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            +K+ +   + +  +   ++ Q++ Y + L
Sbjct: 1041 HKS-YPGSEPVRKVREEYLGQMATYAQAL 1068


>gi|206603867|gb|EDZ40347.1| Putative ATP-dependent DNA helicase, UvrD/REP family
           [Leptospirillum sp. Group II '5-way CG']
          Length = 746

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 113/784 (14%), Positives = 214/784 (27%), Gaps = 145/784 (18%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
           ++   +   +  L                        ++    ++ +     ++    + 
Sbjct: 61  KAARELLHRISRLRPSSRPSWVGTFHSVAARMLRQHAERVDLPREFTIVDGPDQL--QMI 118

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              L ++    K +  +++  +    K       +               +++     + 
Sbjct: 119 RDLLGRQGLSDKEVDPKKLAGRIGKWKSAGVDPAEAI-------------RTSFGPFRIQ 165

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L A Y++       LDF+DL++     L++      +R    ++  HIL+DE QDT+ 
Sbjct: 166 AELYAAYQDNLALQKALDFDDLLLTLVRCLEQDPE---VRESYQRQFEHILVDEYQDTNP 222

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q            + +      + +  VGD+ QSIY F GAE   +L   +        
Sbjct: 223 LQE----------RLLRLLSRDRQNVTVVGDDDQSIYRFRGAEVGHILSFPKEYP----- 267

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L +++RST  I+T    + S           ST          G+ G    
Sbjct: 268 ---GARQVVLTVNYRSTRPIVTAASSMISSALARYRKDMVST----------GRPGEPVF 314

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            +++                          S    AR +A TI   +    +        
Sbjct: 315 LKKL-------------------------DSEWAEARFVARTIREKVERGAM-------- 341

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFIL 429
              +D +VL R                    I            +   I+DL+A  R   
Sbjct: 342 --FRDQVVLFRMNVQAQPFVRAFSE----AGIPFQTRGAVQGFFNRREIRDLLAYLRVSA 395

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-----TETVYEYIQKFANCGISKFQHV 484
           +  D +S   +L  P          ++  Q         E +       +       +  
Sbjct: 396 NPFDRISLGRILNIPPRGMGAKARERLDQQAGNPGLSSWELLERLSLDLSGKARESARAF 455

Query: 485 IKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE----VIDVLDEFLNFTLRN 539
              + E   +A+    P       L      +        E      + L E L  + R 
Sbjct: 456 ANDLQEASRMARGGDGPLSLLQFWLSRTGYEKWVSEEEAGEDAPGREENLKELLRMSERF 515

Query: 540 EQN----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                  +  +   +  E              + + V ++T+H AKGLE P V+LV    
Sbjct: 516 GNGIGELTDRTPTGVFLEELALSQEDPGEPGESPDRVSLLTIHQAKGLEFPHVYLVGAEE 575

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +   K  +K+ +                                    EE  RL YV M
Sbjct: 576 DILPMKSREKVDV------------------------------------EEERRLFYVAM 599

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA D L+I          ++        + D      +  +       +     +  + 
Sbjct: 600 TRARDSLVITWCLTRQLFGRTESPRPSRFLRDIPPEAFQGDRPVFRPETSAPRQTSESFQ 659

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                  PL      +              P K       +L P  I             
Sbjct: 660 RKVFSPPPLAPSRPGRDFRPV---------PEKGSPTPTGVLRPEWIGKTVVHPRFGRGR 710

Query: 776 DNQT 779
             + 
Sbjct: 711 VEEA 714


>gi|317013352|gb|ADU83960.1| putative recombination protein RecB [Helicobacter pylori
           Lithuania75]
          Length = 951

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 128/865 (14%), Positives = 261/865 (30%), Gaps = 163/865 (18%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T  K    +   +    LK+++   + E  +I +    Y   K T         
Sbjct: 243 FLNSSLTWLK---KKSEYRDFKKLKDEIPTLESECKEIENDLKRYYEAKETAIFKKF-PK 298

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y+ A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 299 FIQLYDNATSKIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSL 358

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY+F G+                 +
Sbjct: 359 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS-----------FSSLFES 407

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS   I+  V+ +F         +       +   ++    G V++
Sbjct: 408 VAKDFYHDNLQFNHRSAPLIIDYVNTIFKKAYQNSPTAYLEQKYPKTSQNKHVTDGYVKV 467

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 468 SLVA-------------------------DERELLLEQILQEAKNLLEH----------R 492

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I+ KDI +L    KD   I    +   +    S   +          I            
Sbjct: 493 IKPKDITILCATNKDALEIKNYLQERLSAIHPSTESSTNLSQFVESKIIKNALKYALAEE 552

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD+  + +   + E+                         
Sbjct: 553 PYKPFYKHSVLK--LAGYLHDDVIVLPSFNPKKES------------------------- 585

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       F   ++   +   +                L   +  E          
Sbjct: 586 ---------VAGFVWKVMEQFELYGEPAQSC-----------LELAVGCEDAD-----GF 620

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + +LE          S++   V+IMT+H +KG++ P V + +      +  H  ++    
Sbjct: 621 LEKLEAKAI-----ASSHSKGVQIMTIHKSKGMQFPYVIVCE-RLGKPNSSHSNQLLEEY 674

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              +   +   +   +  +   +  +   + +   E   + YV  TRA   LII      
Sbjct: 675 DGTELLRLYYRMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIIVVKDKD 734

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             + K   +            D    +      +   +      S     +   E+ + I
Sbjct: 735 QKKDKKESKKESKNKGMREKLDLAPLEEGTIAPVISSQKEPLVASVLIKPHAYGEQVQEI 794

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
           ++   + +                                     D +  N G+ +HK L
Sbjct: 795 EEEPSDYEKNN----------------------------------DQEAINFGIALHKGL 820

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
           +       +  K  +  Y   +   +   +++ L  S+     +  +       +     
Sbjct: 821 EY--QYAYNIPKKSVLEYLNYHHGFYGL-DHQALEESLELFENDAEIQALFKNYALR--- 874

Query: 851 VSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
             G+     + ++   RID +   +   +++ +YK+  +          +H  Q+S Y  
Sbjct: 875 --GETAFLFEGVV--SRIDVLLWDRGQNLYVLDYKSSQN-------YQQSHKVQVSHYAA 923

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFI 934
            LK   P+  +   +IY +  ++  
Sbjct: 924 FLKTQAPHFKIQAGIIY-AHKRLLE 947


>gi|303247358|ref|ZP_07333631.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302491272|gb|EFL51161.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 725

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 101/700 (14%), Positives = 198/700 (28%), Gaps = 120/700 (17%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKS-QDEFI 108
            TL++        + F++L            +  +   + ++  P     L    +    
Sbjct: 95  ATLRRYHAAAGFPDGFTVLDQADSEDILGQAKDTLGIGKGDRSFPRKSAVLGLLSKARNK 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++       +     L        +   Y   K +N +LD++DL+      L +      
Sbjct: 155 ELDVGDVLSREAFHLLPYAGDIARIGERYTAFKAENRLLDYDDLLFTLERTLTEHPD--- 211

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +   + Q   ++++DE QDT+ +Q  + R L            +   + AVGD+ QSIY+
Sbjct: 212 LLDYLRQHHRYVMVDEYQDTNRVQARLTRLLA----------PTSGNVMAVGDDAQSIYA 261

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F GA    +L    +             +++L  ++RST  IL++ + +           
Sbjct: 262 FRGATVDNILDFPELFPGTL--------VVKLEQNYRSTQPILSLTNAILQNAGRKYDKK 313

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             +T        R        L                              S    A  
Sbjct: 314 LFTT--------REDGPQPELLRPF---------------------------SDLTQAAM 338

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            A  I  +                  +I VL R    +  +            I      
Sbjct: 339 AAAKIREL-----------SSRYPLHEIAVLFRAGYQSYALEVEL----GKTGIPFQKFG 383

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
               +D   +KD+++  R + +  D  ++  +L             KI       +    
Sbjct: 384 GLKFSDAAHVKDVLSYLRLVRNTADFPAWSRVLAFVP-GIGPKTATKIFNAIQSGDR--- 439

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVID 527
            +         +F+ +I+++  L  +    SP      ++ A      +           
Sbjct: 440 AVLGKMAAKSQEFRALIEFLDTLRALPP--SPAQLLERVIEAYAPLLAEKYPEDYPRRQA 497

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L++             + L  ++++L    P          + V + TVH+AKGLE   
Sbjct: 498 GLEQLQQIAAAY-----ADLDAMLADLVLENPDE-DRKKTREDHVVLSTVHSAKGLEWSA 551

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V ++D   + F  +H                                     +    EE 
Sbjct: 552 VLVIDLVDERFPSRHALS----------------------------------RPEDLEEE 577

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RLLYV  TRA + L +         +          ++        + + +        
Sbjct: 578 RRLLYVACTRAREHLTLFAPETIYQRQTGGCAPALPSIFLRELPPGTLPERRERLGGGSA 637

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
              A       P      R     +       P    +P 
Sbjct: 638 AAFAACPPPSAPATAVRSRLTRPAEAPHLTGAPAPRKAPT 677


>gi|86742479|ref|YP_482879.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569341|gb|ABD13150.1| UvrD/REP helicase [Frankia sp. CcI3]
          Length = 1103

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 122/987 (12%), Positives = 256/987 (25%), Gaps = 160/987 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDIN-KYVSLSMETGNPTILKKA-QTLQQASQTQCIEER 65
           +  E  E I   L              + +  +              L+  S  +     
Sbjct: 83  AAGELRERITARLGAEGGAGGGPGAWTFHAWCLALLRAHERPAPPGGLRLLSGPEQDSRL 142

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             L+       +    + ++     +   +    L  ++   + +          ++   
Sbjct: 143 RDLIEGSREDGRPVWPEPLVGCLRTRGFTEEVRALL-ARAREVGLEPVALAQLARRTGRP 201

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                      Y +       +D+ DL+     + +  +  AW    +     H+ +DE 
Sbjct: 202 DWAALAEFYEMYLDVFGFEGAVDYTDLVHRAVVVAESAEGGAW----LRGRYRHVFVDEY 257

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT   Q  ++ ++                     D  QSIY+F GAE   +L       
Sbjct: 258 QDTDPAQERLLEAVAGGGGNLVVLG----------DPDQSIYAFRGAEVAGLLGFPARFP 307

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +     G+   I+ L    R     L     V      A                     
Sbjct: 308 RL---DGEPAPIVALRRCRRMAPAPLAASRHVARRIPAAGLPVAAIRAHRDLVGRADAGA 364

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
           G VQ      +  +++                               +++++  + + + 
Sbjct: 365 GQVQARTFPGTGAEAES------------------------------VADLLRREHLEN- 393

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKDLMAL 424
                +    + VLVR            R +     + V    D   +    A   L+  
Sbjct: 394 ----GVAWDAMAVLVRT----AERIGRLRRVLAAAGVPVSADGDDLPVAQEPAAALLLLA 445

Query: 425 GRFILSQEDDL---SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            R        L   +   +L SPL       +  +       E   +   +         
Sbjct: 446 LRCAEDPAGALTVDAARTLLTSPLGGADPAGLRALGRALRTLER--DAGSEHPAPSAELL 503

Query: 482 QHVIKYIHELIHIAQFC------------------------SPHDFFTLILGAKKGRQQF 517
           +  +      +                              +P D    +  A +   + 
Sbjct: 504 RAAVAEPDHWLATIPDDLAGPVRRVGGLLRTAGQALRDSSGAPQDALWALWSASEWPARL 563

Query: 518 ISRFGNEVI---------DVLDEFLNFTLRNEQNSYSS------LQELISELEQYPPTIK 562
                             D +    +   R  Q           + EL  +         
Sbjct: 564 RHASAAGGAAGRAADRDLDAVVALFDAVTRLGQRRGPGGGVASLVAELTRQQIAGDVLKP 623

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
              S     VR++T H AKGLE  VV +       +     +   +     D P      
Sbjct: 624 AGESVRRRGVRLLTAHRAKGLEWEVVVVCGVQDGTWPDLRERHSLLGAEQLDAPSRGGLR 683

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
           P                ++    +  RL YV +TRA  +L++   ++  ++     R   
Sbjct: 684 PPLT-------------RQDLLADERRLFYVALTRARRRLVVTAVNSPEDDGSLPSRFLE 730

Query: 683 DM-VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ--------- 732
           ++ V          + + L   +     +A E  +     +  +                
Sbjct: 731 ELGVAVEHVPGRPARPLTLVGLVATLRRLATEPDSSPVMRSAAQARLAALAAARDQAGRP 790

Query: 733 --LMDEQKIPKKLFSPIKNDINEPYILNP-----STIDTKGKTNLESLLSDN-------- 777
                       L  P  +D+    +  P     S++ + G  +L   L           
Sbjct: 791 LVPAAHPDTWWGLLDPTTSDVPVVPVAGPIRLSGSSLSSIGACSLRWFLEHEAYAVTPAS 850

Query: 778 QTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                G ++H L   +              R + +      +A+    +E      ++ R
Sbjct: 851 TAQGFGKVVHALADEVTTGRTPADLAALDARLDTVWRQLDFDARWRSDQERAAAREALAR 910

Query: 831 LLE---NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTH 886
            L+          +     +EV  S  +    +D+ + G ID++ + +   + + ++KT 
Sbjct: 911 FLDWHAAERGRRVID----AEVRFSCDLRVAGRDVQLRGFIDRLELDEAGRVHVIDFKTG 966

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKD 913
                  E        QL  Y+  ++ 
Sbjct: 967 RTAVAPAELAT---HPQLGSYQLAVRA 990


>gi|313822552|gb|EFS60266.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2]
          Length = 1061

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 322

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 323 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 381

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 382 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 441

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 442 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 501

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 502 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 561

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 562 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 621

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 622 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 665

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 666 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 725

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 726 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 785

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 786 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 845

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 846 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 903

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 904 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|85859318|ref|YP_461520.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
 gi|85722409|gb|ABC77352.1| uvrD/rep helicase [Syntrophus aciditrophicus SB]
          Length = 657

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 98/593 (16%), Positives = 179/593 (30%), Gaps = 116/593 (19%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L   + + A Y+  K+++  +DF+DL++N             +     +   HIL+DE Q
Sbjct: 171 LEDIRKVAALYDLRKRQSDFMDFDDLLLNWRR---LLLECPDVLQHYAERFEHILVDEYQ 227

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ IQ E++  L           S  R +  VGD+ QSIY+F GA    ++        
Sbjct: 228 DTNRIQAEIMDLLA----------SRHRNIMVVGDDSQSIYAFRGANFANIMSFPEKYP- 276

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     I +L  ++RST +IL + +      EN    S  +      R        
Sbjct: 277 -------DCRIFKLETNYRSTPEILHLANLSIENNENQFAKSLRAVREAGLRPV------ 323

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                        +    +A   A  +A  I  +          
Sbjct: 324 -----------------------------VVPARNALQQAEFVAQRILELHRDG------ 348

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               I   ++ +L R       +            I           +   IKD+ A  R
Sbjct: 349 ----IPLHEMAILYRAHFHAMDVQMEL----TRRGIPYEIRSGIRFFEQAHIKDVTAYLR 400

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN------CGISK 480
            + +  D+L++  +         +    K+     E+    E   +              
Sbjct: 401 ILGNPLDELAWKRIFGLCPK-IGKKTAEKLWQFLSESGEPLEAALREDFLKVVSKTARGG 459

Query: 481 FQHVIKYIHELIHIA-QFCSPHDFFTLILGAKKGRQQFISRFGNE--VIDVLDEFLNFTL 537
                + + +L   A    +  D  +LI+     R+     + +     + L++   F+ 
Sbjct: 460 LAFFQEVLIKLREEAVHASTLPDLISLIIER-GYRKYLRETYTDTASREEDLEQLAEFSG 518

Query: 538 RNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +      + S   L++ ++              N+V + TVH AKGLE  VV LV     
Sbjct: 519 KFSSLEDFLSELSLMTNMDADGRDKAAGDDLQENKVILSTVHQAKGLEWSVVLLVGCAEG 578

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +   +   +                                            L YV  T
Sbjct: 579 MIPLERAVQEAGGEEEERR----------------------------------LFYVAAT 604

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           RA D L +C      +                     R K++   + + +++W
Sbjct: 605 RAKDYLYLCYPQTDYSRWAGFANLSPSRFIRELVPSSRKKELPFEHWVVEEQW 657


>gi|218960911|ref|YP_001740686.1| hypothetical protein CLOAM0595 [Candidatus Cloacamonas
            acidaminovorans]
 gi|167729568|emb|CAO80480.1| hypothetical protein CLOAM0595 [Candidatus Cloacamonas
            acidaminovorans]
          Length = 1113

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 126/949 (13%), Positives = 296/949 (31%), Gaps = 112/949 (11%)

Query: 11   ESYELIYKDLWPLPYFQV--SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
            +    +  ++             NK        G  T +     L+Q +  +        
Sbjct: 241  QRIIALVANICSDLGKASLEDYFNKDFRNLAVKGALTPVAIFNNLKQLNSDEA-----EK 295

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
            L           ++ I  ++   ++ +L+    +++                +       
Sbjct: 296  LLYILDKGTIWNKQKISNKKFEAENIELENAQNEAKHHLADYLIWKLYLPEQREIEELW- 354

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL----------KKRDVSAWIRYKIDQEIN 178
                +   Y+    +   L ++D+   T + L          +    +      +     
Sbjct: 355  --SSVLERYDNLIYRYKNLTYDDITWFTFETLFSSEPPFLNPEDAVSATEFYQFLSHRTR 412

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             +LIDE QDTSLIQ+ +++ + E+   G+ +      L  VGDEKQSI+ + G E   +L
Sbjct: 413  FLLIDEFQDTSLIQFNILKPIIEEITAGEGSKPFGG-LIVVGDEKQSIFGWRGGERDLLL 471

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE----NAQGLSEDSTTT 294
              K I            ++  L  S+R    ++  +++VF   E      +   +   T 
Sbjct: 472  NLKDIFPAL-----GDLTVEALDKSYRCGPTLMEFINQVFMNAELCSLLQKKEMKWDYTH 526

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            I            ++   +  S   +  + +++ +T +                    + 
Sbjct: 527  IESVEITKEPGTEIEFCLKNFSTSVTNADNEKDIYTDF--------------------VE 566

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
             M+       +          I +L R  ++   I    + L    + S+   +R  + +
Sbjct: 567  RMVLPALEKDDS-------GSIAILCRTNEELTKIQ---QALDISGRASLFQPNR-SIIE 615

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
            H  +  L++  RF+    D + F+  L+S     +   + +       T  + +  QK  
Sbjct: 616  HHYVAPLLSWLRFLA-WGDWIDFIAFLRSDYVLINTKVLKQTLNIISRTLEIQKERQKPV 674

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                S    V+   ++L    +     +    I+      +Q   R        L  FL+
Sbjct: 675  RPDFSTIP-VVNEFYQLSWEQENKKATEICREIIDLCLPSKQLSERDYL----NLHRFLD 729

Query: 535  FTLRNEQNSYS---SLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                 +        S  +L++ L         K+      + ++++T+H +KGL+   VF
Sbjct: 730  ILSTRQLTDPDKGISFPDLLTYLKDNANAEDFKQVSINADDSLQLLTIHKSKGLQFKRVF 789

Query: 590  L-VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW----IPQSKSRNNIVSDLIKHLKKSTQ 644
            +  +   +  +  +     +    N    I  +      Q   +++  ++L    +K  Q
Sbjct: 790  VFCNLSGKHSTDSNTLNWALEYEGNTFNRIRDYGISLHYQKILKSSSYANLYLQNQKRKQ 849

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             E    LYV  TRA  +L +        + K     +Y+   D          +      
Sbjct: 850  LEELNNLYVAFTRAEQKLHLY----FGYKLKEGWNDYYNANKDDNLTVALCNSVFDYFKD 905

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
            +        +     +    E   + +      +      +   +       L P  +  
Sbjct: 906  SPFNERGVYYKKSFLQENKKETSFSSEPPKSNLEQSNYHLNIRHHRPVNWNKLVPVELPA 965

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                    L         G ++H  +  I      +          +   ++   + + L
Sbjct: 966  VKDLKTYYLTERPN--LIGDLLHFYMSFIIRNTPKEHNYAYYRCLNRYGAIFTVFQIEQL 1023

Query: 825  LLSITRLLENPMMTTAMS---CDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFI 880
                 ++ ++       +      ++E  +          I+   RID++ + + + + +
Sbjct: 1024 ADRCKKVCDSNPY--LFTSGWDKIFTEQEILW-----GSKIM---RIDRLMVNTAEKVVL 1073

Query: 881  F-EYKTHHHVPQEIEHIPYTHIA-QLSIYEKILKDS--YPNKSLVCLLI 925
              +YK+              +   QL+ Y+  L     +   ++   ++
Sbjct: 1074 IADYKSG-----------DIYDFNQLANYKTALSKLPVFKGYNIDTSIV 1111


>gi|289425545|ref|ZP_06427322.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|289154523|gb|EFD03211.1| UvrD/REP helicase [Propionibacterium acnes SK187]
          Length = 1058

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 48  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 107

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 108 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 165

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 166 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 219 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 269 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 319

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 320 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 378

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 379 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNSLAGIDRSVIHRLE 438

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 439 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 498

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 499 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 558

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 559 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 618

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 619 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 662

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 663 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 722

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 723 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 782

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 783 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 842

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 843 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 900

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 901 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 947


>gi|253578540|ref|ZP_04855812.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850858|gb|EES78816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 608

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 93/607 (15%), Positives = 194/607 (31%), Gaps = 120/607 (19%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
             +T++  ++     + +++   E   ++    + + + ++  S  + + +   Y++A K
Sbjct: 113 REMTEKYGQEMAQEGDFIEEVAREISVVKGNCISPEHYYASCCSDEIFRDIFHGYKQALK 172

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF+D+I+   +L  +      I     ++  +IL+DE QD + +Q+++++ L   
Sbjct: 173 AKRKLDFDDMILCCYELFSQ---RQDILNAWRRKFVYILVDEFQDINSLQYKILQMLAA- 228

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        LF VGD+ QSIY F GA P+ +L   +   K           + L +
Sbjct: 229 ---------PVNNLFIVGDDDQSIYHFRGARPEIMLNFTKDYPK--------AETVLLNV 271

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++R + +IL    +V            D+                               
Sbjct: 272 NYRCSKNILRTAMEVIGCNTRRFKKQLDT------------------------------- 300

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                           ++        +A     M   + + +             +L+R 
Sbjct: 301 ---PNEEGMPVTCKEFDNPREEYMCVVAALKKRMERGEDLLNT-----------AILLRT 346

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
            +++         +  +Y++     ++   L  H   + L+A            +F+ ++
Sbjct: 347 NQES----EGLINVLMEYQVPFTMKEQLPNLFRHWICRALLAYLEMAAGDRSRKNFLEIM 402

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             P    S + +       +E   + EY +             I  +   + I    SP 
Sbjct: 403 NRPNRYISREALNSSQINFNE---LREYYKDKDWMC-----DRITTLETHLRILGTLSPF 454

Query: 502 DFFTLILGAKKGRQQFISRFGNEVI--DVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                I       +          I  + L E L+           +L +  + +E+Y  
Sbjct: 455 AAINFIRKGMGFEEYLREYAQYRKIKPEELLETLDRIHE-SAKGMKTLAKWQAYIEEYTK 513

Query: 560 ---TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                 R        V I T+H  KGLE  +V++++                        
Sbjct: 514 RLNEQARKQQDKKEGVTISTLHAVKGLEYDIVYILNVNEGSIP----------------- 556

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                               K +     EE  RL YVGMTRA  +L++        +++ 
Sbjct: 557 ------------------YRKAVLAEAVEEERRLFYVGMTRAKKKLVLAYVKRQYEKERE 598

Query: 677 NQRTWYD 683
             R   +
Sbjct: 599 PSRFLEE 605


>gi|291006368|ref|ZP_06564341.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1058

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/992 (11%), Positives = 271/992 (27%), Gaps = 158/992 (15%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
                    L   P   V  ++ Y    +          A  L   +          LL 
Sbjct: 88  RRLTASDDGLRTAPEPLVRTVHSYAFAVLRLQAVREQMPAPRL--LNGPDQDALVRDLLQ 145

Query: 71  SFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                      + +     +   + +L++ L ++ +  +         +           
Sbjct: 146 GDLEEGAPDWPERLRPALSVPGFAEELRDLLLRAAERGVGPDGLVELGRRHDRPE--WVA 203

Query: 130 AKYLNAHYEEAKKKNCV-----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           A      YE+            +D  +L+ +             +     Q + H+L+D+
Sbjct: 204 AGRFARQYEQVTLLRGGGDAAGMDAAELVSSALLAFDTDPDLLHV---ERQRVRHLLVDD 260

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            Q     Q+ +++ L           S+       GD  Q++++F GA+P  V       
Sbjct: 261 AQHLDPQQYWLLQRL----------GSTAAEFVLAGDPDQAVFTFRGADPGSVRD----- 305

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                      + + L +  R +  +   V ++      A                    
Sbjct: 306 -----ADPDGGNTVVLTVDHRMSKAVRAAVQRLAERLPGAGP------------------ 342

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                           +   + E        +   +S +  A  +A  +           
Sbjct: 343 ---------------QRRLAEPEDCPGGSVQVRLHASEAQEAAWVADQLRR--------- 378

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 +   D+ V+VR    +  +  L R L       V+  D   L    A++ L+ L
Sbjct: 379 AHLLDGVPWSDMAVVVRSTGLS--LPVLRRALLAASVPLVLPVDDVPLAQRTAVRPLLTL 436

Query: 425 GRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--------------- 467
            R     +  D  S   +L S L       + ++       E                  
Sbjct: 437 LRCAGRPQALDPDSAAELLASSLGGADPLALRRLRRGLRRLELAAGGSRSSGDLLVEVLR 496

Query: 468 --EYIQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFI------ 518
             + +    +      + V   +           S  +    +  A   +Q+++      
Sbjct: 497 GDDALAALDDSSAGPARKVAHLLKVAREAVDDGRSVEEVLWRVWQASGLQQRWLTVAERG 556

Query: 519 SRFGNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISEL--EQYPPTIKRAHSANHNEV 572
              G +    LD          +  ++   + +      L  +Q   +     +   N V
Sbjct: 557 GITGAQADRDLDAVVSLFEAAAQYVDRLPGADVAGFADYLTGQQIAGSSLAPSAPKENAV 616

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            ++T H A G E  VV +       +    ++   +      D    +      S    +
Sbjct: 617 SVLTAHAAAGQEWEVVAIPGVQEGTWPDLRLRGSLLGVERLVDVLSGVDAADRVSATAPL 676

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
               + L             V  +RA   L++        +          +V D    +
Sbjct: 677 LAEERRLLL-----------VAASRARSGLLVSAVRGEDEQPSRFLDELEGVVSDPDSAE 725

Query: 693 ERVKKIKLTNSINKD------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
             + + +    + +                              +             +P
Sbjct: 726 RPIARPERGLVLAELVGELRQVVCDVQAPARRRERAAAQLARLADAGVPGAHPDTWYGLP 785

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN-------RGLIIHKLLQVI 793
                    + +EP  ++PST+DT  K  L  +   +   +        G ++H L+Q  
Sbjct: 786 PSSCQSPLVEGDEPVRVSPSTVDTLSKCPLRWMAERHGGQDTAELASVTGTLVHALVQAA 845

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                 ++ +       ++         +     + R++E+       S    ++V V  
Sbjct: 846 ADGATEEQLHRALDEAWESVDAGAPWFSRKERARVERMIESFQAWLVASRAELTQVGVER 905

Query: 854 KINCPKKDI------IISGRIDQISIS-QQNIFIFEYKTHHHV--PQEIEHIPYTHIAQL 904
            ++   +         + GR+D++    +    + + KT        + E  P     QL
Sbjct: 906 DLDLTIEGRDGGPSLRLRGRVDRLEADGEGRPVVVDVKTGKTPVSKNDAEEHP-----QL 960

Query: 905 SIYEKILK-DSYPN----KSLVCLLIYVSEPK 931
           ++Y+      ++ +    +     L+YV++P+
Sbjct: 961 AVYQLAAALGAFNDGAWTEPGGARLLYVAKPE 992


>gi|256826533|ref|YP_003150492.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Cryptobacterium curtum DSM 15641]
 gi|256582676|gb|ACU93810.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Cryptobacterium curtum DSM 15641]
          Length = 1262

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 121/766 (15%), Positives = 223/766 (29%), Gaps = 92/766 (12%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT----------Q 60
            + + +   +  L        + + SL             + +  A +            
Sbjct: 162 RTTQALEDSIGRLLDEVSYQTDGFASLDRGPDPAQASDVVRKVLAACEATIACGTDKNRA 221

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             +     L+        TP+  +        +     K  + +D   + +         
Sbjct: 222 TAQALADALNDLIAKNHVTPETLLDALNAVNSNGLRGGKAVELKDAVSEAKALLQLSAAS 281

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +     + LA+     Y         LD  DLI  T  L K+      +     +    I
Sbjct: 282 EMLDELIDLAQRTEEKYRAILHARAQLDTSDLIRTTLRLFKQNPA---LARTYTERFKLI 338

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++DE QDTS +Q ++I  +T          +    L  VGD +QSIY F GA+ +  LR 
Sbjct: 339 MVDEFQDTSQLQIDLIEFITG---------ADKHNLCTVGDSQQSIYRFQGADVEVYLRH 389

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           KR     A        I +L  +FRS AD+L +V ++            D          
Sbjct: 390 KRDMLSDAVG----ARIEQLDDNFRSHADVLALVRRICGQKGYFSEEFLD---------L 436

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
           +    G   L            +       +       E+ A   A  IA   + +    
Sbjct: 437 KAAGPGKTWL------------SSDSRIEMALTRCTSAEAGARCEAAHIARRFAALRQAG 484

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                      +A+D++VL+     + +     R    D  +  +        +   +  
Sbjct: 485 H----------KARDMVVLMGSTTASDIYAQALR----DEGLPCIVAGGSKFFEAPWVDL 530

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ---------RHETETVYEYIQ 471
              L   + +  D  S + +L S L   S DD+  + T          R           
Sbjct: 531 CQRLVNVLANPYDSESLLMVLTSELLPVSSDDLLFLATYHNEVTGDAVRQNPAVGLLRAD 590

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVL 529
           +          H    +           P D F  ++           +   G  +   +
Sbjct: 591 RAPFIASELLDHATDVLKRAWQSLGSQRPRDVFMQVILESGWLACLEKQGAEGQAIAADI 650

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE----QYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            +F          +   +  +   LE                  + VRIMTVH +KGLE 
Sbjct: 651 LKFARLIEEESYANGFDMARVARALEHRRTLSSEKPGALTIEGSDAVRIMTVHASKGLEF 710

Query: 586 PVVFLVDT--------------GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           P+V + +                    +          P L ++        ++ ++   
Sbjct: 711 PIVAIANCYTTRTTGERPYMLTDQGKIALTLPPSDLKAPKLPEELADATTPFEATNQLEF 770

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW--YDMVYDSF 689
           +  + K        E  RL YV  TRASD +I+C       +    +      D++   F
Sbjct: 771 LQLIRKIDTDRKYAERKRLFYVAATRASDAVIVCLKHKLKKDGSPQEYKQVERDLLNGLF 830

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
             +        T    + E   +   T   ++    +   ++    
Sbjct: 831 PGEADFPLESGTFEYGESEPGVFTCLTAAEDDAAGTQVAPVQTDAQ 876



 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
                +  T+       K      +P +        +    +     T    +  D     
Sbjct: 1002 ADAAKTSTVSTAATPVKTDPADVTPAETVSAYIADIKNEQLPGSIATGRHQVEDD--ATA 1059

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
             G  +H+  + +   P     + + +   + + LW   +   +  +++  L + +   A 
Sbjct: 1060 FGSAVHQTCEWLALQPVLPSSDELAAAIKRFSLLWHVSDVPRVHTAVSNWLNSSLCKQAF 1119

Query: 842  S-CDSYSEVSVSGKINCPKKDIIISGRIDQISIS-------------QQNIFIFEYKTHH 887
            S      EV  +        + ++ G ID +                    FI +YKT  
Sbjct: 1120 SFPQHSPEVPFT----ILVGNEVLEGEIDLLCTGTHPRKTKGHAASADDCAFIVDYKTGG 1175

Query: 888  HVPQEIEHIPYTHIAQLSIYE-KILKDSYPNKSLVCLLI 925
               +  E +   H+ Q   Y    L++ + +  +    I
Sbjct: 1176 SPLETPEQLSAKHLLQAQCYAYAALQNGFSH--VEAHFI 1212


>gi|314989616|gb|EFT33707.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3]
 gi|315084653|gb|EFT56629.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2]
 gi|328754849|gb|EGF68465.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1]
          Length = 1061

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 322

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 323 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 381

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 382 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 441

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 442 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 501

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 502 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 561

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 562 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 621

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 622 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 665

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 666 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 725

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 726 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 785

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 786 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 845

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 846 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 903

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 904 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|313812633|gb|EFS50347.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1]
          Length = 1061

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 322

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 323 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 381

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 382 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 441

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 442 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 501

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 502 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 561

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 562 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 621

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 622 EFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 665

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 666 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 725

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 726 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 785

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 786 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 845

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 846 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 903

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 904 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|310780023|ref|YP_003968355.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926]
 gi|309749346|gb|ADO84007.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926]
          Length = 1041

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 142/893 (15%), Positives = 276/893 (30%), Gaps = 142/893 (15%)

Query: 71   SFFLTQKFTPQKNI--ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
              FL +     K+    T +I      ++  ++      I++       K+         
Sbjct: 255  KLFLKEDTFWVKSFINPTAKIKGTEKHVERIIEAYSLFKIELSRFIFNSKVIPYEKNLFD 314

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINT--------NDLLKKRDVSAWIRYKIDQEINHI 180
              +++ + Y+E K +       D+   T          L++   V+ +     + EI  I
Sbjct: 315  FVEFIFSVYDEMKFREKKFTHTDISTFTFKYFSDPRLSLVENNKVTDYFYQLTEGEIKTI 374

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
             IDE QDTS++QW+++RS+TE              +  VGDEKQSIY + G E     + 
Sbjct: 375  FIDEFQDTSILQWKILRSITE----------RANKVICVGDEKQSIYGWRGGEKDLFDKL 424

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
              I            +   L  S+RS   I+  V+K FS   +                 
Sbjct: 425  PNII---------NGTSETLEKSYRSEKTIINFVNKFFSSLRDQYDEENKIWNYENVDYL 475

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            +    G VQ          S  +   E      +                          
Sbjct: 476  QSKDNGFVQTVINCKDDDKSSFDAMIEILQQNVN-------------------------- 509

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                           + ++ R+ KD   I+           I  + N    L +H A+K 
Sbjct: 510  -----------NYNKVGIIARRNKDLIAISEKLAE----NHIPFIINSSGTLLEHRAVKG 554

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            + +L +++    + +  +  ++S + N  + ++ ++  +R E     + I+   +    +
Sbjct: 555  IFSLLKYLA-YNEYIYLLEFMRSDIINIDDSELKELIVKRIEINEYLDGIRDKTDICKLQ 613

Query: 481  F---QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                +   K    +  I           L L   K          N  +  L  F     
Sbjct: 614  LGLIKGFRKKFLGVFQINTKDQKGRLDNLALSLIKDLGILEIFPTNSDVKNLLRFYEILK 673

Query: 538  RNEQNSYSSLQELISELEQ--YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD-TG 594
                    S+++ ++  E+      +K+      N V IM++H +KGLE    F      
Sbjct: 674  EY-----RSIEDFLAYAEENPDGDKLKQVAVEEINAVNIMSIHKSKGLEFETEFFYHPLS 728

Query: 595  SQVFSHKHIKKMHIMPS--LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            ++ F    +K    M     N    +          N +  D ++      + E    LY
Sbjct: 729  TRKFPDTGLKFYLKMDDTYENTKDYLLTNASYKSILNFLNMDFVEENNVKDEMEEINNLY 788

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            V MTR    LI    +    +K         ++         +K    +      +  + 
Sbjct: 789  VAMTRPKKNLITFIDAGIERKK---------LIEKENKILNGLKNAMGSEDNENLDMKSI 839

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
             +    P  T   +++ I    +           ++N + +       ++D + K     
Sbjct: 840  GFFRESPIETVFSQDKKISFNQELDNYIVDTDILMENSVKKKNFSYNMSLDQEFKRKS-- 897

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITR 830
                      G  +H  L+ I  L   + +        K   +   +   N+     I +
Sbjct: 898  ----------GSAVHYFLENIKYLTPEELQKSQKITLAKYGNMLGERMMANIFEGTGIKK 947

Query: 831  LLENPMMTTAMS---CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ------QNIFIF 881
               +   +   S      + E           ++  +  RID++ I +        I I 
Sbjct: 948  FFRD--NSWIFSKDWDHIHRE------FKILDENNSVR-RIDRLMIKEAKDKNPGKIVIV 998

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIY----EKILKD--SYPNKSLVCLLIYVS 928
            +YKT                 Q+SIY      +LK         + C  +++ 
Sbjct: 999  DYKTG-----------EKDEKQMSIYENSIRNLLKKDDLEKLYEIECHFLFLD 1040


>gi|297569240|ref|YP_003690584.1| UvrD/REP helicase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925155|gb|ADH85965.1| UvrD/REP helicase [Desulfurivibrio alkaliphilus AHT2]
          Length = 760

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 107/674 (15%), Positives = 207/674 (30%), Gaps = 137/674 (20%)

Query: 125 ASLTLAKYLN---AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             L     +     HY   K  + ++D++DL++    LL++ +    +R ++ +    +L
Sbjct: 184 HLLEFLDDILLIAEHYRRFKISHGLMDYDDLLLYWRQLLRENEE---VRAELGRRFQALL 240

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ +Q E++R L                + AVGD+ QSIYSF GA+ + ++   
Sbjct: 241 VDEYQDTNPVQAEIVRLLAA----------PRNHVMAVGDDAQSIYSFRGADFRNIMEFP 290

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +              II L  ++RST +IL V + + +        +  S         +
Sbjct: 291 KQFP--------GTRIIRLEENYRSTPEILQVSNAIIAPAPEQYRKNLFS---------K 333

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           +   G   L+                             +    AR +   I  +  +  
Sbjct: 334 LAGGGKPVLY--------------------------AARNEGAQARFVVENIRQLQASG- 366

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    +  ++I VL R    +  +            IS        LT+   IKD+
Sbjct: 367 ---------LPTEEIAVLFRSGFHSYKLELELAA----AGISFEKRGGLKLTESAHIKDV 413

Query: 422 MALGRFILSQEDDLSFVCMLK-----SPLFNFSEDDIFKICTQRHETETVYEYIQKF--- 473
           +A  R + +  D LS+  +L       P       D F       + E            
Sbjct: 414 LAHLRVLCNPADRLSWHRLLLLLDKIGPKTAAGIIDRFPAPAAAEDAEGTGGEEGGAEQP 473

Query: 474 ---------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR---QQFISRF 521
                    A      +Q     + EL+   Q   P     L L     +   Q+     
Sbjct: 474 LAAHLQVLAAYPAAKGWQQGFLLLQELLADLQAAGPAPLPLLELVLVYYQPIFQRLYPDD 533

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTA 580
                  L++        +      +++ +++    PP +    +    + + + T+H+A
Sbjct: 534 YPRRQRDLEQLRPLLAGYQ-----DIRDFLADTALDPPAVNAGGAEGLPDRLVLSTIHSA 588

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE   VF++      F                                      +   
Sbjct: 589 KGLEWDSVFIIHLAEGKFPSG-----------------------------------QAED 613

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-DMVYDSFHNDERVKKIK 699
               EE  RL YV  TRA   L +      +   +          + +       +  + 
Sbjct: 614 DEQYEEERRLFYVAATRAKRNLYLVYPREVTGMDRRPALCHPSPFLGEVPPRLLDLPAVG 673

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP--KKLFSPIKNDINEPYIL 757
              +          +     +      E   +Q   ++ +    ++  P         ++
Sbjct: 674 PPPATADPYPKRQLYRPRPGQGEASSEEGGGRQPAADRPLAVGARVRHPFFGPGVVVRMV 733

Query: 758 NPSTIDTKGKTNLE 771
            PST+D +   +  
Sbjct: 734 PPSTVDVRFDRHGF 747


>gi|327327124|gb|EGE68903.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA3]
          Length = 1061

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 322

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 323 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 381

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 382 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 441

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 442 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 501

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 502 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 561

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 562 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 621

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 622 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 665

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 666 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 725

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 726 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 785

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 786 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 845

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 846 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 903

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 904 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|293378593|ref|ZP_06624754.1| UvrD/REP helicase [Enterococcus faecium PC4.1]
 gi|292642783|gb|EFF60932.1| UvrD/REP helicase [Enterococcus faecium PC4.1]
          Length = 425

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/451 (14%), Positives = 139/451 (30%), Gaps = 86/451 (19%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +    V   +             + ++   L   + +      
Sbjct: 30  GAGSGKTRVLTHRVAYLIQEKNVLPWHVLAITFTNKAAREMRERVDKLLGEAGSDIWVST 89

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F  L    L ++       ++      +++   +K  L     +  +   R     +  +
Sbjct: 90  FHALCVRILRREAEKIGFNRSFTIASPSEQRTLMKHILADLNVDTKRYDPRMVLSNISNA 149

Query: 123 TLASL--------------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               L               +       Y+E  +K+  +DF+DLI+ T +L  K      
Sbjct: 150 KNDLLTVDDYKKNAESPVEQITAQAYEKYQEELRKDSAMDFDDLIMQTIELFTKD---RE 206

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                 ++  +I +DE QDT+  Q+ ++  L E            R L  VGD  QSIY 
Sbjct: 207 TLEYYQRKFQYIHVDEYQDTNEAQYRLVGMLAE----------GSRNLCVVGDADQSIYG 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA  + ++  ++             ++++L  ++RST  IL   + V     N +  +
Sbjct: 257 WRGANMENIMNFEKDYP--------DATVVKLEQNYRSTKTILDAANSVIKNNVNRKVKT 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                LW              +  +    ++  +       A  
Sbjct: 309 ---------------------LW-------TENKAGDKIHYYRGMNANDE-------AYF 333

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +   I   I  +           +  D  +L R    + ++            I      
Sbjct: 334 VVKNIQQKIREEGR---------KYNDFAILYRTNAQSRVMEETF----VKTNIPYKIAG 380

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
                D   I D++A  R   + +D +SF  
Sbjct: 381 AHRFYDRKEILDILAYLRLATNPQDSMSFNR 411


>gi|86749818|ref|YP_486314.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
 gi|86572846|gb|ABD07403.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2]
          Length = 686

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 113/730 (15%), Positives = 208/730 (28%), Gaps = 131/730 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I + +      +   +  +       G   + + A+   L  A    
Sbjct: 69  RRAAAEMTRRVERIARRVMGDGAARGGAL-SWAGTFHGIGARLLREHAERIGLDPAFTIH 127

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F+  +    T+        +  +   +      +         
Sbjct: 128 DREDSADLMNLVRHDLGFSRTESRFPTKAT---CLSIYSRCVNAGQSLDVVLGA-----N 179

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           +          K L A Y EAK+++ VLD++DL++     + +  ++A I        +H
Sbjct: 180 YPWCAGWSAELKQLFAGYVEAKQRHNVLDYDDLLLYWAQTMTEPSLAAEI----GGRFDH 235

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q +V+                   L  VGD+ QSIYSF  A  + +L 
Sbjct: 236 VLVDEYQDTNALQAQVL----------LGLKPDGGGLTVVGDDAQSIYSFRAATVRNILD 285

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +              I+ L  ++RST  IL   + V  +       +  +        
Sbjct: 286 FPKAFS-------PPARIVTLDRNYRSTQAILGAANGVIDLAAERFTKNLWTDRASGSPP 338

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                               L      +  AR I   +     +
Sbjct: 339 -----------------------------------QLVAVRDEADQARYITERVLEHRES 363

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            TI               VL R    +  +            I  V        D   +K
Sbjct: 364 GTILKQQ----------AVLFRTSSHSAPLELEL----TRRNIPFVKFGGLKFLDAAHVK 409

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           D++AL RF+ +  D ++   +L              +       + +       A     
Sbjct: 410 DMLALLRFVQNPRDRVAGFRVLLLMQGIGPASAQKTLDAITAAADPLKALAALPAPPRAP 469

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            ++  +  + EL        P +     L  +    +            L +        
Sbjct: 470 DWRDFVDAVGELRDGRAGGWPAEIERARLWYEPHLDRI-HDDAATRRADLVQLAQIA--- 525

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             + Y S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++   
Sbjct: 526 --SGYPSRERFLTELTLDPPDATSDQAGVPMRDEDYLILSTIHSAKGQEWKSVFVLNVVD 583

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                                                         +  EE  RLLYV M
Sbjct: 584 GCMPSDLGTGTS----------------------------------AEIEEERRLLYVAM 609

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA D L +          ++            +    R    +L N   +  W     S
Sbjct: 610 TRAKDDLHLVVPQRFFTHGQNVMGD-----RHVYAARSRFIPDRLLNLFERVSWPRVAAS 664

Query: 716 THHPENTPLE 725
             +P      
Sbjct: 665 PGYPTRQAPP 674


>gi|321252838|ref|XP_003192537.1| ATP-dependent DNA helicase [Cryptococcus gattii WM276]
 gi|317459006|gb|ADV20750.1| ATP-dependent DNA helicase, putative [Cryptococcus gattii WM276]
          Length = 1036

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 145/444 (32%), Gaps = 93/444 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                +   ++  +L +   L   Y+ A  +   LDF+DL++    L K+         +
Sbjct: 173 AIRATQSKSASTNTLAVIADLYEEYQLALAEANSLDFDDLLLYALRLFKEAP-------R 225

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + ++I HIL+DE QDT+  Q+E+++   +          + + +  VGD  Q+IY +  A
Sbjct: 226 VVEDIRHILVDEFQDTNTTQYELLKRFAK----------AHKGVSVVGDPDQAIYGWRSA 275

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E + + +  +               I L  ++RST  IL     + S        S  ++
Sbjct: 276 EIENLNKMTKDFP--------GVEAIYLEENYRSTGSILDAAHAIVSQDRQRIQKSLFTS 327

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                      +   V L                                 I A  I+  
Sbjct: 328 HP---------KSTPVTLKVFGTP--------------------------VIEASFISTE 352

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  +I            ++   D  +L+R    + +I    +       I          
Sbjct: 353 IKRLIA-------YSGGLLGYNDFAILLRYNALSRVIESSLQ----KDSIPNRIVGGHKF 401

Query: 413 TDHLAIKDLMALGRFILSQEDDL--------SFVCMLKSPLFNFSEDDIFK-ICTQRHET 463
            + + IKDL+A  +   +   +L        +FV ++  P  +  +  +   + T +   
Sbjct: 402 FERMEIKDLLAYLQLADNPGFNLNSDSSTQPAFVRVVNVPKRSIGDKTLTDILSTAKSMK 461

Query: 464 ETVYEYIQK----------FANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKK 512
            +  E  ++                    + +  I +L   A+   S  D   +I+    
Sbjct: 462 ISPMELCERVTDGEAIPTNIKPGVKKSLANFVGVIRKLRRAAERGTSVADLIKMIIEKVN 521

Query: 513 GRQQFISR--FGNEVIDVLDEFLN 534
             +   +     +   + + E ++
Sbjct: 522 YEEYLRTSQPDWDSRWENVKELVS 545



 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 69/237 (29%), Gaps = 43/237 (18%)

Query: 541 QNSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            N+  SL  L   L+       T      A+  +V I TVH AKGLE PVVF+       
Sbjct: 723 ANAPDSLTPLAYFLQTSMLSTDTESGQDDASTPKVTITTVHAAKGLEWPVVFIPAVEQGT 782

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           +                                      +  +     E  RLLYV MTR
Sbjct: 783 YPS-----------------------------------YRCTEPHEIAEERRLLYVAMTR 807

Query: 658 ASDQLIICKHSNTSNEKKSNQ-----RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           A   L        +N++ S       R    ++     N + V +  ++  +++      
Sbjct: 808 AQSFLFRMMGGEENNKEASEFLGDVMRNQPGLLATDQPNVDMVVRKHISAMLSRPAPDEE 867

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                  ++  +    +     +      K     + DI++             +  
Sbjct: 868 MTKDMIMKHVRIAPPLSTWDPPESSSWRSKSNRFARRDISKATRAAEYWASDVDEPP 924


>gi|164687184|ref|ZP_02211212.1| hypothetical protein CLOBAR_00825 [Clostridium bartlettii DSM 16795]
 gi|164603608|gb|EDQ97073.1| hypothetical protein CLOBAR_00825 [Clostridium bartlettii DSM 16795]
          Length = 1349

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/536 (16%), Positives = 171/536 (31%), Gaps = 91/536 (16%)

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLR 538
            K +  +  + EL   + + S  +F   I           +   G++    L        +
Sbjct: 807  KVRRFLDDLKELQEKSMYMSTDEFLWYIYTNSGYYAYCGALPGGSQRQANLRILFERAKQ 866

Query: 539  NEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             E+ S+  +   I+ + +           +    N N VRIM++H +KGLE P+V     
Sbjct: 867  FEETSFKGIFNFINFISKLKKSNSDMGSAKTLGENANVVRIMSIHKSKGLEFPIVICSGM 926

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            G    +    K +     L   P I  +  +    +     L   +      E  R+LYV
Sbjct: 927  GRNFNTMDFRKDVLYHHELGYGPQIVDFERRISYPSIAKEALKCKINIENISEEMRILYV 986

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRT------------------WYDMVYDSFHNDERV 695
             +TRA ++LII        +      +                  + D +  +    + +
Sbjct: 987  ALTRAKEKLIITSSIKDIEQNMHKWSSNISTEKMVSKYDILNGKNYMDWMMPAIIKHKDL 1046

Query: 696  KKIKLTNSI-------NKDEWIAYEWSTHHPENTPLEREE----------TIKQLMDEQK 738
            + I+ T ++       ++ +W    WS    +    E+E           +       ++
Sbjct: 1047 EDIRETYNLSTSISMEDESKWSVKTWSRDDIDFEKHEKEGIREVLNTMDLSQHDTEYYEQ 1106

Query: 739  IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--------------------- 777
            I KKL              + S  + K +        D+                     
Sbjct: 1107 IEKKLNFEYPYLGVVKKAASISVTEIKKRQEEYEEQEDSLGLYKHKTTLKKPKFLSESQK 1166

Query: 778  ----QTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSIT 829
                    RG I+H +++V+       E + K  I     +  ++   KE + L    I 
Sbjct: 1167 SEKITGARRGTIVHLIMEVLDFEKVNTESEIKAQIQDLVKR--RIITEKESQVLSPRKIM 1224

Query: 830  RLLENPMMTTAMSCD-SYSEVSVSGKINC-----------------PKKDIIISGRIDQI 871
            R  ++P+    +S      E  +  +I                     + +++ G ID  
Sbjct: 1225 RFFKSPIAKRMLSSKFVKREQKIYTQIKMNDIYLNDEIFKNNRETYENESVMLRGVIDLY 1284

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
                  + I +YKT        + I + +  Q+ IY  +L      K +    +Y+
Sbjct: 1285 FEEDDGLVILDYKTDFVDKNNKKEIIHKYKKQIEIYADVLSKL-TGKKVKEKYLYL 1339



 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 64/420 (15%), Positives = 152/420 (36%), Gaps = 43/420 (10%)

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDE-FIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
             +K+   +  +     +++      ++ +  ++D       +    +   +       Y
Sbjct: 301 KEEKDKAKKIRDNAKKSIEKIKTSVFNKNYDDLKDEIKFL--YPIVKSLSDVVLMFEQIY 358

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDV-------------SAWIRYKIDQEINHILIDE 184
            + K+   ++DF D+      +L + D               + I  +  ++   I IDE
Sbjct: 359 SQKKRDKGIIDFNDIEHFALQILTETDENGDFVFDEEGKNIPSDIALEYREKFYEIFIDE 418

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD++ +Q  ++ ++                 F VGD KQSIY F  A+P+      +  
Sbjct: 419 YQDSNQVQEVILSTIA---------KQKEPNRFMVGDVKQSIYRFRQAKPEI---FLQKY 466

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRI 302
               T+   K+  I L  +FRS  +++  V+ +F      N   +  +    +   ++  
Sbjct: 467 ATYDTDLSSKYKKIMLYKNFRSRKEVVDSVNYIFEHIMSKNLGEIDYNEEEKLNLGANFE 526

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE-SSASILARRIAYTISNMIG--- 358
                  +       H  +    +       +   ++  ++ I AR +   I +++    
Sbjct: 527 EVEDEKIILGGATEIHLMEKKVPEVEDPDEEEEEGEDLDASQIEARMVGKIIRDIMRPNE 586

Query: 359 -----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                          R ++ KDI++L+R       +         +  I    +      
Sbjct: 587 NCEIMQVFDKKLETYRNVEYKDIVILLRATSAWAPV---FAEELINMDIPTYADMGQGYF 643

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
           + + I+ +M+  + I +   D+  + +L+SP++ F+ +D   I     +  + YE ++ F
Sbjct: 644 ETMEIQVIMSFLKVIDNPMQDIPLIAILRSPIYGFTPEDFIDI-RITDKKVSFYEAMRMF 702


>gi|256825724|ref|YP_003149684.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689117|gb|ACV06919.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547]
          Length = 1119

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 128/1009 (12%), Positives = 259/1009 (25%), Gaps = 224/1009 (22%)

Query: 98   EKLKKSQDEFIKIRDRFNTYKM---------FKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
            E++++  D   ++       +           ++TLA       +   ++E K +  VL+
Sbjct: 180  EQVERELDRLDELLGTVAPNRSGRPYADVLKAQATLAVRRALVPMVQRWQELKAERQVLE 239

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F D    +  L +       +          +L+DE QDT+  Q  V+R        G  
Sbjct: 240  FSDQTQLSARLARGHAAVGRV---ERARSRAVLLDEFQDTTEAQLSVVR--------GVF 288

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                  ++ AVGD  QSIY F GA  + +                  +   L  S+R++ 
Sbjct: 289  AGDPTLSVTAVGDPHQSIYGFRGASARTMESFVESF---------DATERHLSTSWRNSG 339

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
             +L V ++V         L   +            + GT +      S+  +  +     
Sbjct: 340  RVLRVANRVAEPLRERSALDLPALRP---------RPGTDEGPPVTASRFGTPADE---- 386

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                             AR  A  ++       + +             VL RKR   P+
Sbjct: 387  -----------------ARAGAAWLAEHWAPGELGA------------AVLCRKRSQFPV 417

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
            +T           +         L     + D+ AL   +         + +L  P    
Sbjct: 418  VTEALEA----AGLPYEVVGLGGLLLVPEVADVRALLGVVDDPTRGDHLMRLLTGPAARL 473

Query: 449  SEDDIFKICTQRHETETVYEYIQKFANCGISK---------------------------- 480
               D+  +   R E E  +            +                            
Sbjct: 474  GAADLVGLHAWRRELERRWGVRSPGDEGSAERRDHQQLAVTLLDAVLTPVEAGWTGPQGE 533

Query: 481  -----FQHVIKYIHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVL 529
                  +  +  + E +     AQ     +   +   A     +  SR           L
Sbjct: 534  AVSDLARARLASLAEAVTQCLGAQHRGVGELALVAEQALGVDVELASRTDVPPWRARAHL 593

Query: 530  DEFLNFTLRNEQNS--YSSLQELISELEQYPPTI----KRAHSANHNEVRIMTVHTAKGL 583
            + F        +      SL  L+  L             A   + + V+++TVH +KGL
Sbjct: 594  EAFHEHVATFAEAGTREPSLSALMGWLSAAEQHEGALEPGAVEVDPSAVQVLTVHASKGL 653

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP--------------------------- 616
            E   V++    +  F           P     P                           
Sbjct: 654  EWDAVWVPGLVAGTFPSGTGTVRPEGPEWVARPATDSAWWAPASGMLPFALRGDAPSLPE 713

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                  P        + D  +   +   +E  RL YV +TRA   L +      ++   +
Sbjct: 714  WSLPADPDKADFETAMKDFARANGERGLQEERRLAYVAVTRARRLLHLSSAVWGTSAAPT 773

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE----------- 725
                +   V D       V+ +  T+ + ++   A   +   P     +           
Sbjct: 774  PTSDFLLEVLDDCAPGTWVE-MPPTDPVPENPVTATPRTALWPRPEAEDLEHHAHAAAAA 832

Query: 726  -----------------------REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                                   RE  ++   D + +  +  +  + DI     ++ S++
Sbjct: 833  EVGLALETAPGSEPGWTGLAEDSREHLLRFRQDVRLLLAERDAADQPDIEPLRHVSTSSL 892

Query: 763  DTKGKTN-------LESLLSDNQTFNRGLIIHKLLQV------------IFTLPEHKRKN 803
                +                 +   +G   H  ++             +    + +   
Sbjct: 893  VALARDPGARRFLARPVPTPPARAARQGTDFHAWVESQWAPARLFDVPDLPQESQGEWDA 952

Query: 804  FITSYCTKNAKLWPAKEY------KNLLLSITRLLENPMMTTAMSCDS---YSEVSVSGK 854
                   +      A +         L        +                +   V   
Sbjct: 953  HEERDAQEERAAPGAPQDGLALDGPRLRTRAPGEADLRRFQEHFVASEWSGRTPTWVELP 1012

Query: 855  INCPKKDIIISGRIDQIS------ISQQ-NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            +      + + GR D I               + ++KT        E        QL+ Y
Sbjct: 1013 LQTNVAGLTVRGRADAIFPATRAERDAGLEWVVVDWKTSSSPR---EAEVGAAAVQLACY 1069

Query: 908  EKILKDSYPNKS--LVCLLIYVSEPKVF--IIPQNKLNKAFAEISTKIP 952
             +            +     + ++       +P  +  +    +  + P
Sbjct: 1070 RQAFAAWRGIDPATVGGAFFHAADGVTVRPELPDGERLEQLVRLLGEPP 1118


>gi|224371313|ref|YP_002605477.1| PcrA2 [Desulfobacterium autotrophicum HRM2]
 gi|223694030|gb|ACN17313.1| PcrA2 [Desulfobacterium autotrophicum HRM2]
          Length = 1157

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 113/696 (16%), Positives = 193/696 (27%), Gaps = 133/696 (19%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G     +       L          I      +   G   + ++  TL    Q       
Sbjct: 520  GTGKTRTLTARIAWLIRDQGVAPGTILALTFTNRAAG--EMQERLNTLLPGQQGSVWAGT 577

Query: 66   FSLLSSFFLTQ---------KFTPQKNIITQEINKKSPDLKEKLKK-----SQDEFIKIR 111
            F       L +             +K ++ Q +      L   L       ++   +   
Sbjct: 578  FHRFCLMVLKEYAGFKGFIVDDPARKEMLNQAVAHADVALSSALLDRTISMAKQHCLGPE 637

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            D              L     +   Y+E      ++DF+DLI    +L         +  
Sbjct: 638  DDLTKIAPPGLDKQDLVRVARVWQVYQEHLAALDLVDFDDLIAMVINLFNTDSA---LVA 694

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
             I     HIL+DE QD +  Q+ +I  L  +           R L  +GD  QSIY F G
Sbjct: 695  TIRGRFAHILVDEYQDVNKGQYLLIGQLAGN----------GRGLVVIGDPDQSIYGFRG 744

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            ++ +   + +                I L  ++RST  IL    ++ +            
Sbjct: 745  SDNRYFQQFQADYP--------GAEKIVLQRNYRSTEAILRASFQLLTHGNQEG------ 790

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                  +       G  +L                         + + +S    A  +  
Sbjct: 791  ----VSQKVFSDIRGRERL------------------------VIIEATSDRAEAVVVGK 822

Query: 352  TISNMIGTDTIFSNGKKR-------VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             I  ++G  ++FS    +            D+ VL R R+   +   + +       I  
Sbjct: 823  RIETLVGGLSMFSMDAGKVGSTQENEFSFADVAVLYRTRRQGKIFADVFQ----QAGIPF 878

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
               D+  L +H  I +L++L R +           +         +    K+     E+E
Sbjct: 879  QMADKESLLNHPGIGELVSLLRLLKGGATFQDLFLVFNHFKAGAGKGTRQKLGQWFRESE 938

Query: 465  TVYEYIQKFA---------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                   +                    V + I  L    Q     D   L+        
Sbjct: 939  LSPAGAVELLGAAPFVHVRKDIAETLLGVARKIMALGQTVQGLGACDCLDLLASKADLYP 998

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               S        V D  L      + +    L+ L   LE    ++  +      +V +M
Sbjct: 999  LIKSD--ETSCRVFDRLLGDARNRDDDISCFLESLS--LENDSESLWPSAE----KVTLM 1050

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H AKGLE PVVF+      +       +                              
Sbjct: 1051 TMHGAKGLEYPVVFVTGCEPGLIPFAFPGREP---------------------------- 1082

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                     +E  RL YV MTRA D L +   +   
Sbjct: 1083 ------EDIDEERRLFYVAMTRARDILCLTYSTKRR 1112


>gi|296130268|ref|YP_003637518.1| Exodeoxyribonuclease V [Cellulomonas flavigena DSM 20109]
 gi|296022083|gb|ADG75319.1| Exodeoxyribonuclease V [Cellulomonas flavigena DSM 20109]
          Length = 1148

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 131/1067 (12%), Positives = 272/1067 (25%), Gaps = 213/1067 (19%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
            L++    + ++       D+       +   +   +S        T     Q + +A  T
Sbjct: 76   LRDPAARTSDDVLVRHLADVDDAELARRRDRLTVALSQVDAATITTTHGFCQQMLRALGT 135

Query: 60   QCIEERFS---LLSSFFLTQKFTPQKNIITQEINKKSPDL---KEKLKKSQDEFIKIRDR 113
                        L       +     ++           +    +  + ++         
Sbjct: 136  TTGGGVVEPGATLVPDVADLEAEVVDDLYLAAYAGADQPVLTVADAREVARAAVSDHAAL 195

Query: 114  FNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                     T       LA+ +       ++   V+D++DL+    D L      A    
Sbjct: 196  LAPDDAPPGTAPDHRYRLARAVRHEVVRRRRAAHVVDYDDLLTLLRDALTDPATGAAAAE 255

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            ++      +++DE QDT  +QW+++R                RTL  +GD KQ+IY+F G
Sbjct: 256  RVRAPYRVVMVDEFQDTDQVQWQILR----------TAFHGHRTLVLIGDPKQAIYAFRG 305

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A+    L  +              +   L  S+R+ A +L  +  +              
Sbjct: 306  ADVHTYLEAR-----------GVATTATLGRSWRTDAPVLDGLAHLMGGAALGDPRIVVH 354

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                 H   R+     V +               + +  +   +   ++  S++ R +A 
Sbjct: 355  PVEAAHTERRLDGGPPVLVRRVT-----------RRAVGAGSAAPKVDTVRSVVHRDVAA 403

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             +   +    +      R +   D+ VL R+  D   +      +     +  V +    
Sbjct: 404  RVVLTLTHSRLRDGDAWRPVLPGDVAVLARRNADALAVREALAAV----GVPAVVSGLSS 459

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            +    A +D + L   + +  D         +P   +    +      + E         
Sbjct: 460  VFTTAAARDWLVLLSALAATGDTARVAAAALTPFVGWDATRLAGASDAQREDLADRMRTW 519

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
                 G             +  + Q  +       +     G +          +  + E
Sbjct: 520  SHVLAGQG-----------VAALLQATAAAGLHERLAARVDGERVLTD------VRHVGE 562

Query: 532  FLNFTLRNEQNSYSSL-QELISELEQY----PPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             L+   R+     ++L + L + +++          R    +   V+++TVH AKGLE P
Sbjct: 563  VLHAAARDAGLGAAALTEWLRARIDEAAVDYAEERSRRLETDAAAVQVVTVHAAKGLEFP 622

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VV +     +           +    +D         +    +    +     +     E
Sbjct: 623  VVMVPFAWDRWVPRDPS---VLRYHDDDGTRRLHVGGRG---SPGYDEARARHQAEEAGE 676

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL------ 700
              RL YV +TRAS Q+++    +T +   +  R             + V   +       
Sbjct: 677  DLRLAYVALTRASSQVVLWWAPSTVSASGAVGRLVLGARDADGLPPDTVPVPRDDQAAAG 736

Query: 701  ------------TNSINKDEWIAYEWSTHHPENTPLEREE-----------------TIK 731
                         +           W     E  PLE                    T  
Sbjct: 737  FDALAAGSGGTVVHETVDAAPPVVRWEPVRGEPGPLEVARLGRGVDLTWRRTSYSGITAA 796

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD--------------- 776
                    P     P   D  E   +   T          +   D               
Sbjct: 797  AHDAGPAGPSVPDRPGVTDEPEDPGIQDETDGPAPTPPPHAGAGDEPDLAVLAATTPDPA 856

Query: 777  ---------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT-KNAKLWPAKE 820
                                 G ++H +L+ + T     R                   +
Sbjct: 857  LVAALRAVRSPLADLPGGTAFGTLVHHVLENVDTAAADLRGELRARCAEAAGGGGGLGLD 916

Query: 821  YKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKKD----------- 861
               L  ++   +  P         +      D  +E+ +   +     D           
Sbjct: 917  PDALADALLPSMHTPAGPLLGGRTLAQVPPHDRLAELDLELPLAGGDLDPAGRRPATLAD 976

Query: 862  -------------------------------------IIISGRIDQISI----SQQNIFI 880
                                                   ++G ID +            +
Sbjct: 977  VADLLDAHLDPDDPFAAYAGRLRWLHADPGTRPAALRGYLTGSIDAVLRVDVDGDTRYVV 1036

Query: 881  FEYKTHHHVPQEI--------------EHIPYTHIAQLSIYEKILKD 913
             +YKT+   P +                 +   +  QL +Y   L  
Sbjct: 1037 VDYKTNRLAPPDDPLTAWHYRPEAMRTAMLDAHYPLQLLLYAVGLHR 1083


>gi|154933919|gb|ABS88757.1| StkZ [Myxococcus xanthus]
          Length = 651

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 99/724 (13%), Positives = 194/724 (26%), Gaps = 132/724 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +    E +      +        +    + +                       E+   
Sbjct: 42  EMTRRVEELAGAFVDVRRILGGTFHHAAHVLLRQYAG-----VLGFSTNFTVLDREDARD 96

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L+ +    ++    K     ++     DL       Q     +        +  +     
Sbjct: 97  LMVTCIAERRLKSDKRFPRPDL---VLDLVSLAANLQQPVSHVLMDRRPQMLPLAPEVLA 153

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A      +++ K +  ++DF+DL+++   LL        ++ ++ +    +L+DE QD
Sbjct: 154 AAA-----RFQQRKAQMHLMDFDDLLVHLKRLLTHHPD---VKAQLTERFRCVLVDEYQD 205

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q +++     +           + L  VGD+ QSIYSF GA+   ++         
Sbjct: 206 TNRLQGDLVDLFAGE----------RKDLTVVGDDCQSIYSFRGADFTNIIGFPERYP-- 253

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   S+  L  ++RST +IL + +   ++  N       +  +   +         
Sbjct: 254 ------GCSVHALTRNYRSTPEILRLANTSIALNTNQFPKVLTAARSPGVK--------- 298

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                 +V   D+                         A  +A  I  +           
Sbjct: 299 ----PLIVPARDAGEQ----------------------AAYVAQRIGELRDQGLSLEA-- 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                   + VL R    +       +       I           +   IKD++A  R 
Sbjct: 331 --------MAVLYRAHNHS----LELQLELTRRGIPFRVRSGVRFFEQSHIKDVLAHLRL 378

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------ETETVYEYIQKFANCGI 478
           + +  D+L+F  +++             + T            E     +          
Sbjct: 379 VNNPGDELAFKRVIRRVP-GVGPATAEHLWTALRASPEGTPLAEGLAHADVRAHLPRKAQ 437

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--VIDVLDEFLNFT 536
             FQ     +  L       SP      +L          + F  E    D + +   F 
Sbjct: 438 KGFQAFSDLMGRLTQPEASPSPGRLIEDVLAG-GYADFLRAEFSEEEHREDDVRQLAEFA 496

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            R E    +     I+ + ++              + + TVH AKGLE   VF++     
Sbjct: 497 GRFE--DVARFLSEIALVSEFAAGEALREEGPEACLTLSTVHQAKGLEWRAVFVLWLADG 554

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F      ++                                          RL YV +T
Sbjct: 555 RFPLSLATRLPEEEEEE----------------------------------RRLFYVALT 580

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA D L +    +                       E     +   S  + E  A     
Sbjct: 581 RARDTLALVYPQSVLPRDGERILLRPSRFLQELPGGEDAPFDRCILSTLEAEPEASVGQD 640

Query: 717 HHPE 720
             P 
Sbjct: 641 GPPP 644


>gi|134097673|ref|YP_001103334.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910296|emb|CAM00409.1| possible ATP-dependent DNA helicase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 1051

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 119/992 (11%), Positives = 271/992 (27%), Gaps = 158/992 (15%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
                    L   P   V  ++ Y    +          A  L   +          LL 
Sbjct: 81  RRLTASDDGLRTAPEPLVRTVHSYAFAVLRLQAVREQMPAPRL--LNGPDQDALVRDLLQ 138

Query: 71  SFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                      + +     +   + +L++ L ++ +  +         +           
Sbjct: 139 GDLEEGAPDWPERLRPALSVPGFAEELRDLLLRAAERGVGPDGLVELGRRHDRPE--WVA 196

Query: 130 AKYLNAHYEEAKKKNCV-----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           A      YE+            +D  +L+ +             +     Q + H+L+D+
Sbjct: 197 AGRFARQYEQVTLLRGGGDAAGMDAAELVSSALLAFDTDPDLLHV---ERQRVRHLLVDD 253

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            Q     Q+ +++ L           S+       GD  Q++++F GA+P  V       
Sbjct: 254 AQHLDPQQYWLLQRL----------GSTAAEFVLAGDPDQAVFTFRGADPGSVRD----- 298

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                      + + L +  R +  +   V ++      A                    
Sbjct: 299 -----ADPDGGNTVVLTVDHRMSKAVRAAVQRLAERLPGAGP------------------ 335

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                           +   + E        +   +S +  A  +A  +           
Sbjct: 336 ---------------QRRLAEPEDCPGGSVQVRLHASEAQEAAWVADQLRR--------- 371

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 +   D+ V+VR    +  +  L R L       V+  D   L    A++ L+ L
Sbjct: 372 AHLLDGVPWSDMAVVVRSTGLS--LPVLRRALLAASVPLVLPVDDVPLAQRTAVRPLLTL 429

Query: 425 GRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--------------- 467
            R     +  D  S   +L S L       + ++       E                  
Sbjct: 430 LRCAGRPQALDPDSAAELLASSLGGADPLALRRLRRGLRRLELAAGGSRSSGDLLVEVLR 489

Query: 468 --EYIQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFI------ 518
             + +    +      + V   +           S  +    +  A   +Q+++      
Sbjct: 490 GDDALAALDDSSAGPARKVAHLLKVAREAVDDGRSVEEVLWRVWQASGLQQRWLTVAERG 549

Query: 519 SRFGNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISEL--EQYPPTIKRAHSANHNEV 572
              G +    LD          +  ++   + +      L  +Q   +     +   N V
Sbjct: 550 GITGAQADRDLDAVVSLFEAAAQYVDRLPGADVAGFADYLTGQQIAGSSLAPSAPKENAV 609

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            ++T H A G E  VV +       +    ++   +      D    +      S    +
Sbjct: 610 SVLTAHAAAGQEWEVVAIPGVQEGTWPDLRLRGSLLGVERLVDVLSGVDAADRVSATAPL 669

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
               + L             V  +RA   L++        +          +V D    +
Sbjct: 670 LAEERRLLL-----------VAASRARSGLLVSAVRGEDEQPSRFLDELEGVVSDPDSAE 718

Query: 693 ERVKKIKLTNSINKD------------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
             + + +    + +                              +             +P
Sbjct: 719 RPIARPERGLVLAELVGELRQVVCDVQAPARRRERAAAQLARLADAGVPGAHPDTWYGLP 778

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN-------RGLIIHKLLQVI 793
                    + +EP  ++PST+DT  K  L  +   +   +        G ++H L+Q  
Sbjct: 779 PSSCQSPLVEGDEPVRVSPSTVDTLSKCPLRWMAERHGGQDTAELASVTGTLVHALVQAA 838

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                 ++ +       ++         +     + R++E+       S    ++V V  
Sbjct: 839 ADGATEEQLHRALDEAWESVDAGAPWFSRKERARVERMIESFQAWLVASRAELTQVGVER 898

Query: 854 KINCPKKDI------IISGRIDQISIS-QQNIFIFEYKTHHHV--PQEIEHIPYTHIAQL 904
            ++   +         + GR+D++    +    + + KT        + E  P     QL
Sbjct: 899 DLDLTIEGRDGGPSLRLRGRVDRLEADGEGRPVVVDVKTGKTPVSKNDAEEHP-----QL 953

Query: 905 SIYEKILK-DSYPN----KSLVCLLIYVSEPK 931
           ++Y+      ++ +    +     L+YV++P+
Sbjct: 954 AVYQLAAALGAFNDGAWTEPGGARLLYVAKPE 985


>gi|312143393|ref|YP_003994839.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
 gi|311904044|gb|ADQ14485.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
          Length = 944

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/813 (14%), Positives = 256/813 (31%), Gaps = 138/813 (16%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
             +Y +   +   +DF  L    NDLL+ ++        +     +I++DE QDT+ IQ 
Sbjct: 197 YQNYRDLLSEKNYVDFAFLQFYLNDLLENKETEEE----LKNRFKYIMVDEFQDTNYIQE 252

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +I  L E              +  VGDE QS+Y F GA  + +L   +   +       
Sbjct: 253 TIIYKLIE----------KTNNICVVGDEDQSLYRFRGATVRNLLEFPKHFPE------- 295

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + L +++RS   I+ + ++     +                            W  
Sbjct: 296 -AEKVNLTINYRSHQQIIDIYNRFMKSLK----------------------------WGN 326

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                  +   Q             E   S  A+++A  I ++   + I           
Sbjct: 327 ARFNKKIKPCRQNRMPFYNSVFKINEFDKSKQAKKVADFIEDLKTREVIND--------Y 378

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            ++ +L+   K     +        D  I            +  I+ L+A   +I   ++
Sbjct: 379 SEVAILIDSVKG--KYSDSFINALADKGIRSNCPRAKNYFQYEEIRYLLAAFVYIFEFDE 436

Query: 434 D-LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK--YIHE 490
             +S+    +  L     +    +  +R+ + + +   ++     I++ +       +  
Sbjct: 437 KAVSYANDWRLYLEEIKFELKELLEEERYHSFSNWLREKRKYYKEIAEKKETTDENLLDV 496

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           +  + +F     +      +K                 L E  +  +      Y   +  
Sbjct: 497 MYQMFEFKPFKKYLEDNSLSKYNLGIMSDLLAKFNKFYLKE--SQIITFRNVEYIPQRLF 554

Query: 551 ISELEQYPPTIKRAHSANH-----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            S       +    +         + V IMT+H AKGLE PVV + + G +         
Sbjct: 555 KSFFYVLHRSGLNEYEDREKILIKDHVSIMTIHQAKGLEFPVVIVSNLGKKTMQSGQ--- 611

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                               + ++     + + L K    +Y R  YV  +RA + L++ 
Sbjct: 612 -----------------LDKELKDFKHRKIFEDLNKINDFDYMRKYYVAFSRAENFLVLS 654

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
           K+   +N K          + +   ND                    + + +  +++ L+
Sbjct: 655 KYRKNANPKIRPVWNMVKSLEEINKNDWD------------------QVNINEKKDSKLK 696

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           ++ ++   +       + ++  K                          S       G +
Sbjct: 697 KQYSLTTDILVYDTCPRQYNFYKESG--------------------FTSSRRGGALFGSL 736

Query: 786 IHKLLQV-----IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
           +H+ ++      +    +      I  +   N         ++L  +I +   N ++   
Sbjct: 737 VHETIEDVNKYCLEENNDKLSNEKIKEWYENNYDNLREHMQQSLAPNIKKEAFNQIIRYY 796

Query: 841 MSCDSYSEV--SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
            +     E        I+  K D  ISG+ID I   +    + + K     P+E E    
Sbjct: 797 KNNQELIEKISESELNISIEKPDYFISGKIDIILDDEGKYHLIDIK--ATKPEESEEKME 854

Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
            +  QL+ Y  +LK+ +   ++   +IY +  K
Sbjct: 855 KYKFQLATYANLLKNKH-EVNIENAMIYFTGAK 886


>gi|297568687|ref|YP_003690031.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus
            AHT2]
 gi|296924602|gb|ADH85412.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus
            AHT2]
          Length = 1303

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/966 (11%), Positives = 257/966 (26%), Gaps = 169/966 (17%)

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
             P   +  +   KK    + +       +++   +             L  A+       
Sbjct: 334  DPDGGVCKKINIKKGNIPRHRFFDLWAHYMEPVQKLAFSYQTAIQQELLAFARR---ELP 390

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                   +  F+DL+      L+    +A +R  I       LIDE QDT  +Q+ + + 
Sbjct: 391  ARLAAAGLQSFDDLLYGLERALRGPGAAA-LRRFIGSRYPVALIDEFQDTDPVQYSIFQQ 449

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +      G       R L  +GD KQ+IY+F GA+                         
Sbjct: 450  VYGQHVAG--GREEGRRLILIGDPKQAIYAFRGADI---------FAYLQAAQDAGEQRY 498

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             + +++R+   ++  V+ +F        +       +        +     LW +  S  
Sbjct: 499  TMTINWRADRRLVAAVNALFQPVAQPFVVPGIDFPAV------TARPDAPDLWRETTSAG 552

Query: 319  DSQCNP----------QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            +    P           +   +       +      +   +A  I  ++           
Sbjct: 553  EEDEQPLQFLLPPPKLAERLNSGPGRLPARSRVEKAVPNLVAADIVRLLEGAGSLGE--- 609

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            R ++  DI VLVR  +   L+    +       ++ V + R  +      + L  L   +
Sbjct: 610  RGLRPADIAVLVRSNQQAALVQHALQ----RRGVAAVLHSRESVFQSTEARQLSILLHGL 665

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L Q  +      + S L   +  ++  +     + ++      +++       +  +  +
Sbjct: 666  LGQAGEPQRRAAMLSGLLGCTRAELESLEEDEQQWQSWLLRFTRWSRLWSE--RGFMAVM 723

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              +          +    +L    G+++  +         L E L+   R       +L 
Sbjct: 724  RAIGEEQ------EMPARLLNHPNGQRRLTN------FRHLAELLHNQEREAHLQPPALL 771

Query: 549  ELISE----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS-QVFSHKHI 603
            + + E    L       +    ++   V+++T+H +KGL+ PVV+           ++  
Sbjct: 772  KWLDEGIAGLRPGSEFDELRLESDEEAVQVLTIHRSKGLQYPVVYCPYLWKTGKRKNEEK 831

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY--------NRLLYVGM 655
             K       +D     I +     +       +                     + +   
Sbjct: 832  DKFFTFHDPDDHWQGKITLQPDDEQRQARRRELFAEDLRLLYVALTRARHCCRAVWFGAD 891

Query: 656  TRASDQLIICKHSNTSNEKKSNQR--TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                  L    H        ++    ++ ++               L  +  +      +
Sbjct: 892  GYQESALAYLLHGGEQGHPPADLTGLSFAELQQRLHRRVANEPDWGLQTASAETIPAPPQ 951

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP-------------- 759
                   +     + T  + M              + I     LN               
Sbjct: 952  HGQVQKPSAAAAADPTRLRQMQTTIDTAWRVGSFSHLIARASELNATVSERDYDAAADAA 1011

Query: 760  ------------------STIDTKGKTNLESL-------------------LSDNQTFNR 782
                              S  D  G     +                             
Sbjct: 1012 ATVAGDSAGAAARTATGDSDGDAAGDRGGAAPVTAAGAPPVSLRLAARVPLADLPAGAAI 1071

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------- 835
            G + H++L++I      + +  I              +   L  ++  +L+ P       
Sbjct: 1072 GNLWHRILELISFQQPDQHQEIIAEQLRIFGVDRRQWQ-PVLEEALATILDTPLTAAEPF 1130

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDI--------------------------------- 862
             +      +  +E++  G +    + +                                 
Sbjct: 1131 RLADIKDTERLNEMAFIGPVRQQDQPLEAADLARVFKQFPENLPPGYADRLAQLRFPALQ 1190

Query: 863  -IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILK 912
              + G +D I   Q   ++ +YK++   P   ++ P           +I Q  +Y   L 
Sbjct: 1191 GYLKGFVDLICRWQNKWYVIDYKSNLLGPTHADYQPANLLPAMSNHHYILQYHLYTLALH 1250

Query: 913  DSYPNK 918
                 +
Sbjct: 1251 RHLAQR 1256


>gi|134108923|ref|XP_776576.1| hypothetical protein CNBC0690 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259256|gb|EAL21929.1| hypothetical protein CNBC0690 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1089

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/537 (14%), Positives = 173/537 (32%), Gaps = 109/537 (20%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            R + L    ++ K     + I++   K  P     ++ +Q++               + 
Sbjct: 138 SRKAALDEASMSLKEGVVLSEISKAKAKGEPPEAMAIRAAQNK--------------NAF 183

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
             +L +   L   Y+ A  +   LDF+DL++    L K+         ++ + I HIL+D
Sbjct: 184 TNTLAVIADLYEEYQLALTEANSLDFDDLLLYALRLFKEAP-------RVVENIRHILVD 236

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+  Q+E+++   +          + + +  VGD  QSIY +  AE + + +  + 
Sbjct: 237 EFQDTNTTQYELLKRFAK----------AHKGVSVVGDPDQSIYGWRSAEIENLNKMTKD 286

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         I L  ++RST  IL     + S        S  ++           
Sbjct: 287 FP--------GVEAIYLEENYRSTGSILDAAHAIVSQDRQRIQKSLFTSHP--------- 329

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
           +   V L                                 I A  I+  I  +I      
Sbjct: 330 KSAPVTLKVFSTP--------------------------VIEASFISTEIKRLIA----- 358

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                 +++  D  +L+R    + +I    +       I           + + IKDL+A
Sbjct: 359 --YSGGLLRYDDFAILLRYNALSRVIESSLQ----KDSIPNRIVGGHKFFERMEIKDLLA 412

Query: 424 LGRFILSQEDDL--------SFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQK-- 472
             +   +   +L        +FV ++  P  +  +  +   + T +    +  +  ++  
Sbjct: 413 YLQLADNPGFNLNSDSFTQPAFVRVVNVPKRSIGDKTLTDILSTAKSMKISPMQLCERVT 472

Query: 473 --------FANCGISKFQHVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISR--F 521
                             + +  I +L   A+   S  D   +++          +    
Sbjct: 473 DGEGIPANIKPGVKKSLANFVGVIRKLRRAAEGGASVADLIKMVIEKVNYEDYLRTSQPD 532

Query: 522 GNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
            +   + + E ++         +    L   +++LE     I  + +    + R+  
Sbjct: 533 WDSRWENVKELVSSPPTFLLFLHHRVPLWPWLTDLENGNSQISYSVTVAEEQARLSG 589



 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 62/236 (26%), Gaps = 49/236 (20%)

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L   +        T      A+  +V IMTVH AKGLE PVVF+       F        
Sbjct: 749 LAYFLQTSMLSTDTESGQDDASTPKVTIMTVHAAKGLEWPVVFIPAVEQGTFPS------ 802

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                         +  +     E  RLLYV MTRA   L +  
Sbjct: 803 -----------------------------YRCTEPHEIAEERRLLYVAMTRAQSFLTMSY 833

Query: 667 --HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT-- 722
                   E+ + + + +                   +++ +    A        E+   
Sbjct: 834 CQFRMMGGEENNKEASEFLGDVMRHQPALLATDQPNVDTVVRKHMSAMLCRPMPDEDLTK 893

Query: 723 -------PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN---PSTIDTKGKT 768
                        +     +     +K+    + D+ +         S +D     
Sbjct: 894 DMIMKHVRAAPPLSTWDPPERSSWGEKINRFARRDVTKAARATEYWASDVDEYALP 949


>gi|313792360|gb|EFS40459.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1]
 gi|313816226|gb|EFS53940.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1]
 gi|313832979|gb|EFS70693.1| UvrD/REP helicase [Propionibacterium acnes HL056PA1]
 gi|314960466|gb|EFT04568.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2]
 gi|314962479|gb|EFT06579.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1]
 gi|314972836|gb|EFT16933.1| UvrD/REP helicase [Propionibacterium acnes HL053PA1]
 gi|314983660|gb|EFT27752.1| UvrD/REP helicase [Propionibacterium acnes HL005PA1]
 gi|315085338|gb|EFT57314.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3]
 gi|315109403|gb|EFT81379.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2]
 gi|327329832|gb|EGE71587.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL096PA2]
 gi|327443714|gb|EGE90368.1| UvrD/REP helicase [Propionibacterium acnes HL043PA2]
 gi|327443749|gb|EGE90403.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2]
          Length = 1061

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 322

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 323 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 381

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 382 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 441

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 442 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 501

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 502 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 561

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 562 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 621

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 622 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 665

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 666 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 725

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 726 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 785

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 786 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 845

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 846 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 903

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 904 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|171912708|ref|ZP_02928178.1| UvrD/REP helicase [Verrucomicrobium spinosum DSM 4136]
          Length = 672

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/631 (15%), Positives = 201/631 (31%), Gaps = 129/631 (20%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+Q       E++  L+ +            + T       P++  ++    D       
Sbjct: 118 LRQGFSIMDREDQKDLMETV------VTSSGVDTTTYRFPKPEVLGEIFSLADNTSTSIA 171

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    K +      +   + L   Y   K +   +DF+DL+  T  L ++ +    +  +
Sbjct: 172 QVVKGK-YPYFERVVEGIEKLRELYTAKKLETNNVDFDDLLTMTLRLFRENED---LLDR 227

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +    IL+DE QDT+L+Q E+I  L                L  VGD+ QSIYS+ GA
Sbjct: 228 YRRTFRFILVDEYQDTNLLQSELIELLAG----------PEGNLMVVGDDAQSIYSWRGA 277

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             K +L   +   K          + ++ +++RS  ++L + ++   + +     +    
Sbjct: 278 NLKNILEFPQRYPK--------ARVYKIEVNYRSVPEVLHLANRAIEVNQGQFRKALMPA 329

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              +            ++   +V                         +AS  A  +A  
Sbjct: 330 RVGK------------EVLPALVPL----------------------DNASAQASFVAQR 355

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  +              ++  ++ V+ R    +       +    +  I          
Sbjct: 356 ILELRDEG----------MEFNEMAVIYRAHYHS----LEIQMELTNRGIPFQITSGLRF 401

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            +   +KD+ A  +F ++++D++SF+ +++      +                     Q 
Sbjct: 402 FEQAHVKDVAAFMKFAVNRQDEVSFMRLVRLIPGVGTASAGKMWAHWLQSAAVAGPVTQS 461

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCS-----------PHDFFTLILGA-KKGRQQFISR 520
                + K     K        A               P      ++    +   +   +
Sbjct: 462 VFGECLRKLPAPKKAAKIWEQTAFTLEELLESEGEPVAPSAMIRSVMEGVYEDYMRTKFK 521

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP----PTIKRAHSANHNEVRIMT 576
             ++    L++  N++ R        + E +S+L             A++ +   V + T
Sbjct: 522 NADQRKQDLEQLSNYSTRF-----KDVSEFLSQLALVSGVDTDEQPNANNRDSEAVTLTT 576

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            H AKGLE   VF V     +F +                                  +I
Sbjct: 577 AHQAKGLEWQAVFAVWLAEGMFPNNR--------------------------------VI 604

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           +   +   EE  RL YV +TRA D+L +   
Sbjct: 605 EESGEVGLEEERRLFYVTVTRAKDELYLTYP 635


>gi|313827480|gb|EFS65194.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2]
          Length = 1058

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 48  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 107

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 108 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 165

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 166 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 219 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 269 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 319

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 320 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 378

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 379 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 438

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 439 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 498

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 499 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAAALRSRAVAGDSTANRDL 558

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 559 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 618

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 619 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 662

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 663 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 722

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 723 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 782

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 783 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 842

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 843 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 900

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 901 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 947


>gi|313820643|gb|EFS58357.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1]
 gi|314924886|gb|EFS88717.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3]
          Length = 1058

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 48  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 107

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 108 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 165

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 166 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 219 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 269 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 319

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 320 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 378

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 379 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 438

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 439 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 498

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 499 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 558

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 559 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 618

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 619 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 662

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 663 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 722

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 723 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 782

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 783 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 842

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 843 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 900

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 901 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 947


>gi|94987114|ref|YP_595047.1| superfamily I DNA/RNA helicase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731363|emb|CAJ54726.1| Superfamily I DNA and RNA helicases [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 711

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 100/611 (16%), Positives = 186/611 (30%), Gaps = 124/611 (20%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS-QDEFIKIRDRFNTYKMFKSTLASLT 128
           +   LT     ++ +   + ++  P L+       +    +I  +    K     ++ + 
Sbjct: 111 AQDTLTSLQHCKEELKIAKGDRSFPKLQTVAALLSRARNKEITFKELIQKDSPHLISHID 170

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS--AWIRYKIDQEINHILIDEVQ 186
               L   Y   KK+  +LD++DL+     LLK  +      +     +   +I++DE Q
Sbjct: 171 SLTTLVERYTTYKKQQNLLDYDDLLFEFELLLKGDESKNIPPLAPLFQERYQYIMVDEYQ 230

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q  ++R L+ +               AVGD+ QSIY+F GA    +L    +   
Sbjct: 231 DTNRVQARLVRLLSGN----------TNNTMAVGDDAQSIYAFRGATVNNILEFPNLFP- 279

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     II L  ++RST  IL   + +    +        +               
Sbjct: 280 -------GTKIIRLEENYRSTQPILDTANAILKESQEGFHKHLFTNRI---------GGE 323

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V+L   +                               A  IA  I  ++         
Sbjct: 324 KVRLIRSLSDLT--------------------------QANLIANRIKELLS-------- 349

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              +   K+I +L R    +  +          + I          T+   IKD+MA  R
Sbjct: 350 ---IYPPKEIAILFRAGYQSYHLEIAL----AKHTIRFRKYGGLKYTEAAHIKDMMAFIR 402

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            I++  D  SF+ +              KI     +   +     +            + 
Sbjct: 403 LIVNPLDMPSFLRIAAFSK-GVGPKTAQKIYQIAAQGNFLE---LQKVCNKYPDLLSDMT 458

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFI---SRFGNEVIDVLDEFLNFTLRNEQNS 543
            + E+        P +  T +      + + I             L+E ++         
Sbjct: 459 LLDEIRQQP--LEPTEILTKVFEH--YQPKLIVHFPEDWPRRQQGLEELIHIASAY---- 510

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                +L   +                 + + T+H+AKGLE   V ++D     F  +H 
Sbjct: 511 ----TDLEQFIADLSLETPEEELNEEESIVLSTIHSAKGLEWDAVIILDLVEDRFPSRHS 566

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              ++    EE  RL+YV  TRA  QL 
Sbjct: 567 L----------------------------------IRSEDFEEERRLMYVACTRAKKQLE 592

Query: 664 ICKHSNTSNEK 674
           +   +   N++
Sbjct: 593 LSVPTTLYNKQ 603


>gi|326443255|ref|ZP_08217989.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 1198

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 121/826 (14%), Positives = 235/826 (28%), Gaps = 127/826 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLS 70
                +     L       I    +  +          AQ L+ A          FS L 
Sbjct: 108 RISTYHAFAGQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLV 167

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              L       ++++  E+     +      +  +            +      A+    
Sbjct: 168 GDLLALDAELSEHLVRPELLAAHDE------ELLETLASASLTNADLRRLPEAAAARREL 221

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           + L   Y  AK+   +LDF D I  + +L L +  V   +R +       +L+DE QDTS
Sbjct: 222 RGLVLRYRAAKRSRELLDFGDQIALSAELALTRPAVGTLLRDE----YRVVLLDEYQDTS 277

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q  ++  L            +   + AVGD  Q+IY + GA    +         R  
Sbjct: 278 VAQRLLLSGLFG--------QGTGHAVTAVGDPCQAIYGWRGASVANLDDFPIHFPYR-- 327

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
             G   +   L  + RS   +L + + + +     + + E          +       V 
Sbjct: 328 -DGTPAARYSLSENRRSGGRLLQLANGLAAPL---RAMHEGVEALRPAPGAERDGSVRVA 383

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L      + D                             +A +I+ ++  D         
Sbjct: 384 LLPTHAEEID----------------------------WLADSIARLVRADKA------- 408

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                +I VL R   D P I            I V       L     + DL+A+   + 
Sbjct: 409 ---PGEIAVLCRTATDFPEIQAALVA----RDIPVEVVGLSGLLHLPEVADLVAVCEVLQ 461

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------------------------- 461
               + S V +L  P +     D+  +  +                              
Sbjct: 462 DPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRDSGHDDGAGLAERLAAAVEGTDP 521

Query: 462 -ETETVYEYIQKFANCGIS------------KFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
            E  ++ + +  F +   +            +F H+ + + EL   +      D    +L
Sbjct: 522 AEVISLADALDAFIDPAGADDGLPFSGEARVRFAHLARELRELR-RSLADPLMDVLHRVL 580

Query: 509 GAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI--- 561
                  +  +          + L  FL+        +  +SL   +  L          
Sbjct: 581 STTGLDVELSASPRALAARRRETLGNFLDIAAGFAALDGEASLLAFLGFLRTAAQYEKGL 640

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDP 616
             A     N V+++T H +KGLE  VV +    +  F     ++       ++P      
Sbjct: 641 DNALPGGENTVKVLTAHKSKGLEWDVVAVPGLTAGSFPSDRAREAWTAHPQVLPHALRGD 700

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
              +    +     +     + LK+    E  RL YV  TR    L+   H     +K+ 
Sbjct: 701 AATLPELPAPDAKGL-KAFKEELKEHQHTEELRLGYVTFTRPRSLLLGSAHWWGPAQKRP 759

Query: 677 NQRTWY--DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              + +   +          ++      + + +               PL+     ++  
Sbjct: 760 RGPSAFLEALYEHCVAGFGEIEVWADEPAADAENPQQTPGGPDEVWPLPLDPASLRRRRA 819

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
               +   L  P+  +   P   + ST        L +    + + 
Sbjct: 820 ARDTVLAYLEEPV--EPVGPVRSDGSTATPAAPVPLSADALGDTSA 863



 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/273 (8%), Positives = 58/273 (21%), Gaps = 32/273 (11%)

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                 +     +                  +   +     ++L   +    ++  P    
Sbjct: 930  GHTGPQATGPADGGPDGPEPLTPEELRAIASWDRDLTALAQELRGARASVHEVPLPPALT 989

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ-VIFTLPEHKRKNFITSYC 809
             ++   L         +              RG   H  ++     LP            
Sbjct: 990  ASQLMRLAADPDGFARELARPMPRPPQPAARRGTRFHAWVESRFEELPLPLLGP-----D 1044

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISG 866
                      +  ++        +   +  A         +   V           ++ G
Sbjct: 1045 ELPGGDLDGPDLADIADEE----DLAALKEAFERTPYARRTPHRVESPFQITLAGRVVRG 1100

Query: 867  RIDQISIS---------QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
            RID +  +              I ++KT      +          QL++Y     + +  
Sbjct: 1101 RIDAVYRTTAADGPATSPARYEIVDWKTGAAAAADP--------LQLAVYRLAWAEQHGL 1152

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
                +    ++V   +V              + 
Sbjct: 1153 DPEEVDAAFVFVRSGEVVRPQSLPGRAELERVL 1185


>gi|254586149|ref|XP_002498642.1| ZYRO0G15224p [Zygosaccharomyces rouxii]
 gi|238941536|emb|CAR29709.1| ZYRO0G15224p [Zygosaccharomyces rouxii]
          Length = 1161

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 90/625 (14%), Positives = 177/625 (28%), Gaps = 138/625 (22%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
              Y   +Y+    +   LDF+DL++ T  LL         R K    I H+L+DE QDT
Sbjct: 198 ALAYFFENYQNELNRLNALDFDDLLMYTFRLLT--------REKCLPRIRHVLVDEFQDT 249

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ +++             H   R +  VGD  QSIY+F  A            Q+  
Sbjct: 250 NGIQMDLMFLFAR------GNHHLSRGITVVGDPDQSIYAFRNALAYN-------FQEMF 296

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                + S + L  ++RS+  IL   + +                       R    G  
Sbjct: 297 RRCPIECSSVVLVENYRSSQKILDTSETLI----------------------RQQTEGRT 334

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                                 S+ ++                     I  + ++     
Sbjct: 335 DRLPLRAQYDCIFAPVYLNFPASFLEAPS-------------------IVREMLYLKSLP 375

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            +    D  +LVR+R+    I         ++++           +      ++ L + +
Sbjct: 376 NLFSYDDFAILVRQRRQIKKIETAL----IEHRVPYKILKGHAFWELKETTSMINLLKCV 431

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----------ETETVYEYIQKFANCGI 478
            S+ +  + +  L+ P          ++ T             +                
Sbjct: 432 YSENEKNAMIAALQYPARGIGPATAERLRTIIESKDISPFDTLKRIREGRIKFDMIGKAR 491

Query: 479 SKFQHVIKYIH---ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG------------- 522
           S     +  I    +L       +  + F  +  +   +Q++    G             
Sbjct: 492 SSLIDFVNMIEACKKLREAPIDVALKEIFDKLYESSGMKQEYCYFDGKKKADRKPDSEPN 551

Query: 523 --NEVIDVL----DEFL----------------------------------NFTLRNEQN 542
             N     +    D FL                                  N  + + +N
Sbjct: 552 YLNPRHRNVLVLRDYFLGTNSGNENGGVVTDSVDNTVVSGNNDKSDPMTNLNSVMEHFRN 611

Query: 543 SYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH- 600
            + SL    ++ E+            +   V + T+H AKGLE PVVF+      +    
Sbjct: 612 FFVSLTIYSNDTEESEEANAIKKQKYSEGLVTVSTIHGAKGLEWPVVFIPGCEEGIIPSL 671

Query: 601 ----KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
               +           +++        +    +N  +     +   +  E  R+ +V  T
Sbjct: 672 FGDGRSSNLEGDDDEDSENESDEEQKSEKPVTDNNSTKKKTVVPDDSLNEERRMFFVAQT 731

Query: 657 RASDQLIICKHSNTSNEKKSNQRTW 681
           RA   L +   ++      +    +
Sbjct: 732 RAKHLLYLSSVTDRDGRVPAVPSRF 756


>gi|21672704|ref|NP_660771.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola str.
            Sg (Schizaphis graminum)]
 gi|25008435|sp|Q8K9A9|EX5B_BUCAP RecName: Full=Exodeoxyribonuclease V beta chain
 gi|21623346|gb|AAM67982.1| exodeoxyribonuclease V 135 kD polypeptide [Buchnera aphidicola str.
            Sg (Schizaphis graminum)]
          Length = 1179

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 145/852 (17%), Positives = 286/852 (33%), Gaps = 136/852 (15%)

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+K  +L F DL+     LLK       +R  I ++    LIDE QDT++ Q+++  +
Sbjct: 353  REKEKKLLLGFNDLL---KILLKNIKKEESLREIIIKQYPVALIDEFQDTNIQQYQIFNT 409

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            L           +    LF VGD KQSIYSF GA+    L  K   +             
Sbjct: 410  LY---------KNKKTALFLVGDPKQSIYSFRGADIFSYLHAKFKIKNYY---------- 450

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  ++RS+ +I   ++ +FS  +N           I   S  +              + 
Sbjct: 451  YLDTNWRSSKNICKAINYLFSKNKNPFYFKNIPFEPILSSSKNLNM----------KFKI 500

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQA 373
              +       +    + +  E     +A++ A  IS  +     G   I    ++R++  
Sbjct: 501  KEKNQTAISFFFQKKEEVNIEEYRDWIAKQCANEISYWLTCSKKGEAIISDGSQERILTE 560

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            KDI++LVR R +  +I      LK    +S   +    +       +L+++ + IL   D
Sbjct: 561  KDIVILVRNRTEAQIIKE---SLKKVNILSKYSSPYESVFKTFDALELLSILKSILDPTD 617

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
                   + + +   ++    KI        + +   + +      K   +   I  +  
Sbjct: 618  INLLKKSILTHI--LNKIAFQKIKENSKTKISHFLIQKLYEYNDKWKTIGIFYTIKTM-- 673

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV---LDEFLNFTLRN---EQNSYSSL 547
                         IL  +K    F      +       + E L    +N   E +     
Sbjct: 674  -------------ILEYQKYANNFEMYKNQQRNINFLHIAELLQEKSQNCYKENSLMRWF 720

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            ++ I E           + A    +RI+T+H +KGLE P+V++        S  +     
Sbjct: 721  EKKILEKNNISENEYIKNFAESKIIRIITIHKSKGLEYPIVWIPFIVDFNVSKSYFYHEK 780

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL----- 662
                            +    NN  S+ +K   +    E  R LYV +TR+         
Sbjct: 781  -------------KTLKIFFDNNKSSETLKKSDEERLAEDLRFLYVALTRSIYHCSIGIS 827

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
             + K    + +     ++    +  +       + +     +NK  +I  ++   + ++ 
Sbjct: 828  YLVKKRKKNKKSSDIHKSSLGYIIQNGKCMNYKELLYELKILNKKLYIEVKYQAMNCKSL 887

Query: 723  PLEREETIKQLMDEQKIPKK-------LFSPIKNDINEPYILNPSTIDT---KGKTNLES 772
             +++++       +  + +         F+ IK +      +  + I++   K K   ++
Sbjct: 888  TIKKDDLYILSQPQFLLKEIKLYSQITSFTKIKQENKHFNNIQYNNIESYFFKEKDKKKT 947

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
            + +       G+ IH +L+ I         ++  +   K    +  K  K L+  I  +L
Sbjct: 948  IHNFPHGNKAGIFIHYILKTI-KFNNTFNIDWFYTILKKYE--FSEKWAKTLMFWINNIL 1004

Query: 833  E------NPMMTTAMSCDSYSEVSVSGK----INCPKKDIIIS----------------- 865
                   N  +++        E+         + C   + II                  
Sbjct: 1005 NFKINNLNITLSSLKKTQYIKELEFFLPIKNTLYCEDLNQIIQSIDLISSISQKIFFNPV 1064

Query: 866  -----GRIDQISISQQNIFIFEYKTHHHVPQE---------IEHIPYTHIAQLSIYEKIL 911
                 G ID + I  +  +I +YK ++    +          E I   +  Q  +Y   L
Sbjct: 1065 IGILKGFIDLVFIFNKKYYILDYKCNYLGNNDNCYSSKNIKKEIIKNRYDIQYQLYTLAL 1124

Query: 912  KDSYPNKSLVCL 923
               Y  K +   
Sbjct: 1125 HQ-YLKKKVKQY 1135


>gi|261404451|ref|YP_003240692.1| UvrD/REP helicase [Paenibacillus sp. Y412MC10]
 gi|261280914|gb|ACX62885.1| UvrD/REP helicase [Paenibacillus sp. Y412MC10]
          Length = 822

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 88/560 (15%), Positives = 179/560 (31%), Gaps = 95/560 (16%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + + A YE  K+++  +DF+D+++ +  LL      + +   +     ++++DE QDT L
Sbjct: 210 RQIFARYEAWKEEHGQMDFDDILVLSYRLLSHD---SGLLASLQSRYRYVMVDEFQDTGL 266

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           + +E+++ +              R L  VGD+ Q+IY F+GA  + +L   +        
Sbjct: 267 LPYELLKKIVA----------PHRNLMVVGDDDQTIYGFNGARNEFILEFDQTFP----- 311

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 ++ L +++RS + I+ + +++  + E  +     ST         +        
Sbjct: 312 ---GAKVVTLDINYRSLSSIVGLGNEIIRVNERRRPKQLRSTRKSSSVPLYLRPGDP--- 365

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                              A  +   I+  +             
Sbjct: 366 --------------------------------DQEAELLLTHITEQVRE---------HG 384

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            Q +D  +L R   ++     +   L       +   +  +  +   +K LM   R  L 
Sbjct: 385 KQYRDHAILYRTANNSR---AIFEQLVMREIPFIHYENGDLFYEQWIVKPLMDHLRLSLD 441

Query: 431 QEDDLSFVCMLKSPLF----NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
           + +  +   ML +         +          +    +         +  I   +   K
Sbjct: 442 RRNFTAMEGMLHTLYINRDKGMAFIRQQDAPRPKKGPLSHLLSFPGLKDFQIENIRERSK 501

Query: 487 YIHELIHIAQFCSPHDFFTLILGA--KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            I  L  +    +  +          +   +Q I+     + + LDE      R      
Sbjct: 502 LIKGLKAMEPLQAVQEMRRQFYDKFLEADERQEITLHKEFIQEGLDELEASAKRF--GDI 559

Query: 545 SSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           +     +  L      +       + + VR+MT+H +KGLE P V L+     +  H   
Sbjct: 560 AEFVGFVDRLIIIHKEMAAMKRDEHADAVRLMTIHKSKGLEFPSVCLIGASEGILPHTSA 619

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                 +  +       +       EE  RL YV +TRA D+L+
Sbjct: 620 LDAE------------------RRDDQRPLSDKEDKALDALEEERRLAYVAITRARDELV 661

Query: 664 ICKHSNTSNEKKSNQRTWYD 683
           I         K    R + D
Sbjct: 662 ISSPGFYRGRKAEVSRFFRD 681


>gi|327329921|gb|EGE71675.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL097PA1]
          Length = 1058

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 48  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 107

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 108 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 165

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 166 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 219 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 269 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 319

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 320 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 378

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 379 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 438

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 439 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 498

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 499 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 558

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 559 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 618

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 619 EFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 662

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 663 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 722

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 723 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 782

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 783 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 842

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 843 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 900

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 901 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 947


>gi|294814880|ref|ZP_06773523.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294327479|gb|EFG09122.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 1200

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 121/826 (14%), Positives = 235/826 (28%), Gaps = 127/826 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLS 70
                +     L       I    +  +          AQ L+ A          FS L 
Sbjct: 110 RISTYHAFAGQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLV 169

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              L       ++++  E+     +      +  +            +      A+    
Sbjct: 170 GDLLALDAELSEHLVRPELLAAHDE------ELLETLASASLTNADLRRLPEAAAARREL 223

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           + L   Y  AK+   +LDF D I  + +L L +  V   +R +       +L+DE QDTS
Sbjct: 224 RGLVLRYRAAKRSRELLDFGDQIALSAELALTRPAVGTLLRDE----YRVVLLDEYQDTS 279

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q  ++  L            +   + AVGD  Q+IY + GA    +         R  
Sbjct: 280 VAQRLLLSGLFG--------QGTGHAVTAVGDPCQAIYGWRGASVANLDDFPIHFPYR-- 329

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
             G   +   L  + RS   +L + + + +     + + E          +       V 
Sbjct: 330 -DGTPAARYSLSENRRSGGRLLQLANGLAAPL---RAMHEGVEALRPAPGAERDGSVRVA 385

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L      + D                             +A +I+ ++  D         
Sbjct: 386 LLPTHAEEID----------------------------WLADSIARLVRADKA------- 410

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                +I VL R   D P I            I V       L     + DL+A+   + 
Sbjct: 411 ---PGEIAVLCRTATDFPEIQAALVA----RDIPVEVVGLSGLLHLPEVADLVAVCEVLQ 463

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------------------------- 461
               + S V +L  P +     D+  +  +                              
Sbjct: 464 DPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRDSGHDDGAGLAERLAAAVEGTDP 523

Query: 462 -ETETVYEYIQKFANCGIS------------KFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
            E  ++ + +  F +   +            +F H+ + + EL   +      D    +L
Sbjct: 524 AEVISLADALDAFIDPAGADDGLPFSGEARVRFAHLARELRELR-RSLADPLMDVLHRVL 582

Query: 509 GAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI--- 561
                  +  +          + L  FL+        +  +SL   +  L          
Sbjct: 583 STTGLDVELSASPRALAARRRETLGNFLDIAAGFAALDGEASLLAFLGFLRTAAQYEKGL 642

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDP 616
             A     N V+++T H +KGLE  VV +    +  F     ++       ++P      
Sbjct: 643 DNALPGGENTVKVLTAHKSKGLEWDVVAVPGLTAGSFPSDRAREAWTAHPQVLPHALRGD 702

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
              +    +     +     + LK+    E  RL YV  TR    L+   H     +K+ 
Sbjct: 703 AATLPELPAPDAKGL-KAFKEELKEHQHTEELRLGYVTFTRPRSLLLGSAHWWGPAQKRP 761

Query: 677 NQRTWY--DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              + +   +          ++      + + +               PL+     ++  
Sbjct: 762 RGPSAFLEALYEHCVAGFGEIEVWADEPAADAENPQQTPGGPDEVWPLPLDPASLRRRRA 821

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
               +   L  P+  +   P   + ST        L +    + + 
Sbjct: 822 ARDTVLAYLEEPV--EPVGPVRSDGSTATPAAPVPLSADALGDTSA 865



 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 22/273 (8%), Positives = 58/273 (21%), Gaps = 32/273 (11%)

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                 +     +                  +   +     ++L   +    ++  P    
Sbjct: 932  GHTGPQATGPADGGPDGPEPLTPEELRAIASWDRDLTALAQELRGARASVHEVPLPPALT 991

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ-VIFTLPEHKRKNFITSYC 809
             ++   L         +              RG   H  ++     LP            
Sbjct: 992  ASQLMRLAADPDGFARELARPMPRPPQPAARRGTRFHAWVESRFEELPLPLLGP-----D 1046

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISG 866
                      +  ++        +   +  A         +   V           ++ G
Sbjct: 1047 ELPGGDLDGPDLADIADEE----DLAALKEAFERTPYARRTPHRVESPFQITLAGRVVRG 1102

Query: 867  RIDQISIS---------QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
            RID +  +              I ++KT      +          QL++Y     + +  
Sbjct: 1103 RIDAVYRTTAADGPATSPARYEIVDWKTGAAAAADP--------LQLAVYRLAWAEQHGL 1154

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
                +    ++V   +V              + 
Sbjct: 1155 DPEEVDAAFVFVRSGEVVRPQSLPGRAELERVL 1187


>gi|256396908|ref|YP_003118472.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
 gi|256363134|gb|ACU76631.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
          Length = 1124

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 130/889 (14%), Positives = 240/889 (26%), Gaps = 149/889 (16%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--KKAQTLQQASQTQC 61
           R GL  +     +  D        V+ +     L    G    L  K      + S+   
Sbjct: 125 RLGLEPS---ARLLADATRY-QLAVTAVRGPKELRYFKGKVADLADKVLALDGELSEHLV 180

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
             E        F+ Q  + +     +       D  +  + ++                 
Sbjct: 181 SPEELREHEEAFIGQAESFRDPKSGKAKR-GYTDFLKAAEIARQRVE------------- 226

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                      L   Y + K +  ++DF D ++    L ++R     I     ++   +L
Sbjct: 227 --------LSELVERYRDLKVRRDLIDFGDQMVLGARLAEERPEVGAI---EREKFKVVL 275

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDTS+ Q  ++  L                + AVGD  QSIY + GA    +    
Sbjct: 276 LDEYQDTSVAQRRMLVGLFG----------GGHPVTAVGDPCQSIYGWRGASVANLDDFP 325

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               K     G +     L  + RS   +L   + V                       R
Sbjct: 326 DHFAK---ADGARSRGYTLSENRRSGGHLLEFANVV-------------------SDPLR 363

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
               G  +L                  WT    +   E     +AR +A           
Sbjct: 364 QRHTGVRELRPSAEKADQ--------GWTRVGLTETAEEEVRWVARMVA----------- 404

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                 +  +  ++I VLVRK    P +            + V       L     + DL
Sbjct: 405 --DAHYRGGVSLREIAVLVRKGNQIPPLYEEMHA----QGLPVEVVGLSGLVHLPEVADL 458

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-- 479
           +A+   +     + S V +L  P +     D+  +  +  E           A       
Sbjct: 459 IAMLDVLDEPIANASLVRLLTGPRWRIGARDLALLGMRARELVRDPAEYADRAGRDRLAE 518

Query: 480 --------------------------------KFQHVIKYIHELIHIAQFCSPHDFFTLI 507
                                           +F      I  L          D    +
Sbjct: 519 AVAGSDPTEVVSLSDAMADPGPDLPFSEAARVRFARFASEIRILRRRLSE-PVLDVLHRV 577

Query: 508 LGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISEL---EQYPPT 560
           +       +  +          + L  FL      +      S+    + L   E++   
Sbjct: 578 ISVTGLDVEVAASPKLVAQRSSETLAAFLVRAADFQDLEGDQSVTAFRAYLKAAERHERG 637

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT-GSQVFSHKHIKKMH-IMPSLNDDPGI 618
           I  +  +  + V+++T+H +KGLE   VF+    G+     +       ++P        
Sbjct: 638 IDASLPSQGDSVKLLTMHKSKGLEWDAVFVPHLSGAGQKPRESWIGSGAVLPYPLRGDAE 697

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
            + +              +  K+    E  RL YV +TR    L    H     +KK   
Sbjct: 698 HLPVLDDAGNTAAFKSFKEQAKEYESWEDLRLEYVTVTRPRYYLTASGHWWGPTQKKRRG 757

Query: 679 RTWY-----DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
              +     +   D              +++N             P+    ER     ++
Sbjct: 758 PDTWLSGLFEHCQDGHGEVVAWAAEPDPDAVNPSLGATEAHWPVLPDAEAAERRRIGAEM 817

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR-------GLII 786
           +      ++  +  +    EP    P   +       E  L+ +            G  +
Sbjct: 818 VVTALRRRQAEAFGEPIGAEPASEEPQAAEQPDAGAGEGALARSGALEPVPFFDENGEPM 877

Query: 787 HKLL--QVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
             LL  Q     P            +   ++A     ++ + LL  + R
Sbjct: 878 TDLLPAQRAPEAPGEPHVIDAEHAATAEDRSAIASWDRDLEALLEELKR 926



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/260 (10%), Positives = 71/260 (27%), Gaps = 24/260 (9%)

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              +R  +      +   E  A         +   + E  +++L     I +    P    
Sbjct: 882  PAQRAPEAPGEPHVIDAEHAATAEDRSAIASWDRDLEALLEELKRGDSIQRYAPLPSSMS 941

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
             ++           + +           +   G   H  ++ +F                
Sbjct: 942  ASQLLRYRNDPSRFRRELARPMPQPPQPSARLGTKFHAWIESLFG-----------QQAL 990

Query: 811  KNAKLWPAKEYKNLLLSI-TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID 869
               +  P    + +   +  + L++  + T  +       +V           ++ GRID
Sbjct: 991  FEYEDLPGAADEEIADEVDLKELQDAFLRTPWADSV--PAAVEQPFQVVLSGRVVRGRID 1048

Query: 870  QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYV 927
             +  +     + ++KT      +          QL++Y     +    P  ++    +YV
Sbjct: 1049 AVYKTPDGWEVVDWKTSRSQDADP--------VQLAVYRLAWAEMRGVPLSAVSAAFVYV 1100

Query: 928  SEPKVFIIPQNKLNKAFAEI 947
               +          +   E+
Sbjct: 1101 RGGETVRPTGLPDREELEEL 1120


>gi|291279137|ref|YP_003495972.1| exodeoxyribonuclease V subunit beta [Deferribacter desulfuricans
            SSM1]
 gi|290753839|dbj|BAI80216.1| exodeoxyribonuclease V, beta subunit [Deferribacter desulfuricans
            SSM1]
          Length = 1098

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 139/938 (14%), Positives = 291/938 (31%), Gaps = 165/938 (17%)

Query: 44   PTILKKAQTL-QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
              +++K + L Q   + +  E+  +     F+ +      +I   E NK      E +KK
Sbjct: 207  EELVEKIEKLYQSIDELEENEDTANRYVKSFIKKTKIFDFDIFQYEFNKSESKYLESIKK 266

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
             +DE +     +   K+  +  +               K KN ++ F DL+ N    L+ 
Sbjct: 267  LRDEIVTDFKNYIKNKIISNLESIQEFLDS-------KKLKNNIITFNDLVKNVYLSLRN 319

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                A     +      +LIDE QDT   Q E+   +  +           +T+F +GD 
Sbjct: 320  SGELASRYKNLQ----VLLIDEFQDTDFFQIEIFNKIFNE-----------KTVFYIGDP 364

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQSIY F GA+        +  ++         +   L + +RST +++   +K+FS   
Sbjct: 365  KQSIYGFRGADLNAYFYATKNIKEE--------NKFVLSICYRSTDNLIENYNKIFSKAS 416

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                           + ++      V    ++     +  N   +S              
Sbjct: 417  FFGDDRITYQQVSFFKENKFKIKSFVNSDFEIYLLDCTNKNQVLDSLF------------ 464

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                      I+  +  + I    ++R ++ +DI V+V    D        R   ++  +
Sbjct: 465  --------NRINYALSHEKIIDGDEERGLRPEDIAVIVPTNFDA----ESVREYLSNRGV 512

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
              V N    + +     +L+ +   +   ++       L +P+F+       +I     E
Sbjct: 513  KSVLNTTKTVFETDQAFELIKILDALEDYKNPSKIKTALLTPVFD------KRIYEINDE 566

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                Y       +  + K   +  +I                  IL    G + + +   
Sbjct: 567  IIREYAEKFALYSQYLQKLGVLPAFIKIFFDENSKG-------KILKRVNGERIYTNYL- 618

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-------EQYPPTIKRAHSANHNEVRIM 575
                  + E L        N   S +++ S +        +     +    ++ N ++I+
Sbjct: 619  -----HILELLQ---EETLNDVYSPEKMKSWIIKRRRGDIKGSEDYELRLESDENAIQII 670

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE P V +                   P   D  G       + + N  + + 
Sbjct: 671  TIHRSKGLEFPFVIIPF--------------FDYPKQFDRQGTFYKFFYNFNENKHLLEF 716

Query: 636  IKHLK---KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
            I       +   +E  RL YV +TRA  + +I  +     +         ++      +D
Sbjct: 717  IYGEDSILEDDIQEKARLFYVALTRAKCKCVIFDYKRRGYKYLDTFLYGAELNDKVSFDD 776

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
            +  +                  ST    +   E ++ + +    +     + S   + I 
Sbjct: 777  KLQRLKHFLGDN--AYIDTLVPSTDKKVSFSNEDKKLVFEKFSGEFKNSYILSSYSSMIK 834

Query: 753  EPYIL----------NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
                L              +D K +  +   +S       G  +HK+L+ I      ++ 
Sbjct: 835  SAKNLEKGNEIFELEELLELDEKEEHFIAENISLPPGAKTGNYLHKILEDISFGWSSEK- 893

Query: 803  NFITSYCTKNAKLWPAKEYKNLLL----------SITRLLENPMMTTAMSCDSYSEVSVS 852
              I + C +  K     E   L             I  + +N             E    
Sbjct: 894  --IKNVCFEYGKKLGFDEAAGLEAYKIISKVLNKKIKAIDKNFRFAELDDEKCSKEFEFF 951

Query: 853  GKINCPKK----------------------------DII--ISGRIDQISISQQNIFIFE 882
             ++N  +                              ++  + G ID +    + ++I +
Sbjct: 952  LRLNDSRGFLDELKSIFSNKGLSVFSKRLQDIDVEKGVLTFLRGFIDLVFEYDKKVYIVD 1011

Query: 883  YKTHHHVPQEIEHIPYT---------HIAQLSIYEKIL 911
            +K++       ++             +  Q+ IY+  +
Sbjct: 1012 WKSNFLGSSIEDYSRERLIDEIALHHYYLQMVIYQIAI 1049


>gi|289428079|ref|ZP_06429782.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|289158679|gb|EFD06880.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|313825513|gb|EFS63227.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1]
 gi|314978139|gb|EFT22233.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2]
 gi|315088602|gb|EFT60578.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1]
          Length = 1058

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 48  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 107

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 108 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 165

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 166 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 219 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 269 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 319

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 320 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 378

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 379 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 438

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 439 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 498

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 499 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 558

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 559 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 618

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 619 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 662

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 663 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 722

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 723 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 782

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 783 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 842

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 843 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 900

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 901 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 947


>gi|315077695|gb|EFT49746.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2]
          Length = 1061

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 322

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 323 GTVAALRAPSITRLV-RKIAGTLRHARVADSVAWRSMAVVTRHGGELDVIATILAAEGIP 381

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 382 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 441

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 442 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 501

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 502 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 561

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 562 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 621

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 622 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 665

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 666 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 725

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 726 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 785

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 786 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 845

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 846 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 903

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 904 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|213582726|ref|ZP_03364552.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 433

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 125/370 (33%), Gaps = 77/370 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 134 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 190

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 191 IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 235

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+V + +        G                       L
Sbjct: 236 ---GAQTIRLEQNYRSTSNILSVANALIENNNGRLGKK---------------------L 271

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 272 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 312

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R    + ++            +           +   IKD ++  R I +
Sbjct: 313 -----CAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIAN 363

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCG------ISKFQH 483
           + DD +F  ++ +P     +  +  +    R    T+++  ++            S  Q 
Sbjct: 364 RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQR 423

Query: 484 VIKYIHELIH 493
            ++ I  L  
Sbjct: 424 FMELIDALAQ 433


>gi|313764134|gb|EFS35498.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1]
 gi|314914864|gb|EFS78695.1| UvrD/REP helicase [Propionibacterium acnes HL005PA4]
 gi|314929975|gb|EFS93806.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1]
 gi|315101552|gb|EFT73528.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1]
 gi|327452205|gb|EGE98859.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3]
 gi|328753881|gb|EGF67497.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1]
          Length = 1061

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 261/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 322

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 323 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 381

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ +  +     D   I  L 
Sbjct: 382 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLANPLAGIDRSVIHRLE 441

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 442 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 501

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 502 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 561

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 562 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 621

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 622 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 665

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 666 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 725

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 726 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 785

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 786 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 845

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 846 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 903

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 904 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|295130854|ref|YP_003581517.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|291375110|gb|ADD98964.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|313771952|gb|EFS37918.1| UvrD/REP helicase [Propionibacterium acnes HL074PA1]
 gi|313801692|gb|EFS42932.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2]
 gi|313807184|gb|EFS45677.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2]
 gi|313809681|gb|EFS47415.1| UvrD/REP helicase [Propionibacterium acnes HL083PA1]
 gi|313819378|gb|EFS57092.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2]
 gi|313830017|gb|EFS67731.1| UvrD/REP helicase [Propionibacterium acnes HL007PA1]
 gi|313838406|gb|EFS76120.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1]
 gi|314967656|gb|EFT11755.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1]
 gi|314975742|gb|EFT19837.1| UvrD/REP helicase [Propionibacterium acnes HL045PA1]
 gi|315095787|gb|EFT67763.1| UvrD/REP helicase [Propionibacterium acnes HL038PA1]
 gi|315098849|gb|EFT70825.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2]
 gi|327442648|gb|EGE89302.1| UvrD/REP helicase [Propionibacterium acnes HL043PA1]
 gi|327453454|gb|EGF00109.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1]
 gi|328761487|gb|EGF75011.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL099PA1]
          Length = 1058

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 48  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 107

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 108 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 165

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 166 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 219 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 269 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 319

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 320 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 378

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 379 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 438

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 439 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 498

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 499 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 558

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 559 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 618

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 619 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 662

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 663 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 722

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 723 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 782

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 783 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 842

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 843 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 900

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 901 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 947


>gi|314986297|gb|EFT30389.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2]
          Length = 1058

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 262/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 48  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 107

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 108 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 165

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 166 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 219 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 269 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 319

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 320 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 378

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 379 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 438

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 439 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 498

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 499 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 558

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 559 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 618

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 619 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 662

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 663 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 722

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 723 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 782

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 783 ELSASHIGEFLACPRGWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 842

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 843 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 900

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 901 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 947


>gi|283852748|ref|ZP_06370012.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283571829|gb|EFC19825.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 733

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 104/753 (13%), Positives = 201/753 (26%), Gaps = 135/753 (17%)

Query: 7   LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETG--------NPTILKKAQT-LQQAS 57
           ++       I   L         ++     L +  G          T    A   L++  
Sbjct: 44  VAGGVDPASIL--LLTFTRKAAQEMLSRAGLLLAMGPDGVSGVSGGTFHAFAFATLRRYH 101

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS--QDEFIKIRDRFN 115
                 + F++L            K+ +      +S   +  +     +    ++     
Sbjct: 102 AAAGYPDGFTVLDQADSEDVLGQAKDKLGIGKGDRSFPRRSAILGLLSKARNKEMAVADV 161

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKID 174
             +     L        L   Y   K  + +LD++DL+      LL   D++ +    + 
Sbjct: 162 LSREAFHLLPYADAIGQLGEAYTAFKTDHNLLDYDDLLFRLEQTLLGNPDLADY----LR 217

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
               +I++DE QDT+ +Q  + R L            +   + AVGD+ QSIY+F GA  
Sbjct: 218 VRHRYIMVDEYQDTNRVQARLTRLLA----------PASGNVMAVGDDAQSIYAFRGATV 267

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L    +            ++++L  ++RST  ILT+ + + +           +T  
Sbjct: 268 DNILDFPDLYP--------GTTVVKLEQNYRSTQPILTLTNAILANAGRKFEKHLFTTRE 319

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                                                    L +  S    A  +A  + 
Sbjct: 320 -----------------------------------DGPVPELMRPFSDLTQAAMVAAKVR 344

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +            R     +I VL R    +  +            I          +D
Sbjct: 345 EL-----------SRTYPLHEIAVLFRAGYQSYALEVEL----GKTGIPFQKFGGLKFSD 389

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              +KD+++  R + +  D  ++  +L             KI       +          
Sbjct: 390 AAHVKDVLSYLRLVRNTADFPAWSRVLAFVP-GIGPKTATKIFEAIQAGDRGVLGKMAAR 448

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVIDVLDEFL 533
                     +  +  L        P      ++ A      +            LD+  
Sbjct: 449 TAEFKTLIEFLDTLRGLP-----PVPAALLERVVEAYAPLLAEKFPDDYPRRQAGLDQLQ 503

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                        L   +++L    P          + V + TVH++KGLE   V L+D 
Sbjct: 504 QIAAAY-----HDLDAFLADLVIENPGE-DRKKTREDHVVLSTVHSSKGLEWSAVLLIDL 557

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             + F  +H                                     +    EE  RLLYV
Sbjct: 558 VDERFPSRHALS----------------------------------RPEDLEEERRLLYV 583

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
             TRA + L +         +++       +              +    +       + 
Sbjct: 584 ACTRAREYLALFAPETVY--QRTTGGCSPALPSIFLRELPPGPLKERRERLGGSSSGTFA 641

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                P         +          P    +P
Sbjct: 642 AGCAPPRAAAGSASMSGSPRPGAGPRPAPAGAP 674


>gi|300783059|ref|YP_003763350.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
 gi|299792573|gb|ADJ42948.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
          Length = 1057

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 127/990 (12%), Positives = 279/990 (28%), Gaps = 175/990 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S +     I + L   P               E    T+   A +L +            
Sbjct: 68  SADALRADITRRLTADPEQARPLPR----TVREPLVRTVHSYAYSLLRLEAMAEELPPPR 123

Query: 68  LLSSF--------FLTQKFTPQKNIITQEINKK------SPDLKEKLKKSQDEFIKIRDR 113
           LL+           L      +     +++         + +L++ L ++ +    +   
Sbjct: 124 LLAGAEQDVVVRELLAGDLDEEAEYWPEQLRPALLVPGFAEELRDLLMRAAER--GLGPG 181

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV------------LDFEDLIINTNDLLK 161
                  +        A    A YEE  +                LD  +L+ +    L+
Sbjct: 182 DLAELGRRRGREEWIAAGQFWAQYEEVTQLQGAGGNALGVASAPALDAAELVTSALLALE 241

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
             D    +R +    + H+ +D+      +Q  ++R +            +       GD
Sbjct: 242 DDDE---LRERERTRVRHLFVDDAHHLDPLQTSLVRMI----------GHTAAEFVVAGD 288

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q+++SF GA+ +                      + L  + R    +   V K+ +  
Sbjct: 289 PDQNVFSFRGADARLFAD----------ADPDGSRTVTLTTAHRLAPAVRLAVAKIGATL 338

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
             A           +         GTV++        +                      
Sbjct: 339 PGAS-------PHRKIVPPAGASGGTVRVRVMPTPAAE---------------------- 369

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                   A  I++ +    +        +   +I VLVR    T L+    +       
Sbjct: 370 --------ASWIADQLRRAHLVD-----GVPWSEIAVLVRSPARTFLV---LQRALRAAG 413

Query: 402 ISVVGN-DRFILTDHLAIKDLMALGRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICT 458
           + +    +   L    A++ L+A+ +   S E  D      +L S L       + ++  
Sbjct: 414 VPIGSATEELPLAKQPAVRPLLAVLKLAPSPELLDIDLAEMLLSSALGGADPLALRRLRR 473

Query: 459 -----------QRHETETVYEYIQ------KFANCGISKFQHVIKYIH-ELIHIAQFCSP 500
                      QR   E + E ++        A+      + V   +      +A+    
Sbjct: 474 GLRRLELAGGGQRSSDELLVEALRGGDILAGLADAEAEPVRRVGGLLRVTHQAVARGEGV 533

Query: 501 HDFFTLILGAKKGRQQFISR------FGNEVIDVLD---EFLNFTLRN-EQNSYSSLQEL 550
                 +      + + + +       G +    LD      +   R  ++   SS+   
Sbjct: 534 EQVLWQLWRESGLQDKLLKQAERGGSLGAQADRDLDAVVALFDAAGRYVDRLPRSSVASF 593

Query: 551 ISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              L  ++         +   + V ++T H A G E  VV +       +    ++    
Sbjct: 594 ADYLGAQRIAGDTLAPAAVPSDGVSLLTAHAAAGREWTVVAVAGVQEGAWPDLRLR---- 649

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                   G  + + + K     V D           E  RL Y+ M+RA   L++   S
Sbjct: 650 --------GSVLGVERLKDLMAGVDDDAVSQTAPILAEERRLFYLAMSRAKQTLLVTAVS 701

Query: 669 NTSNEKKSN-----QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
               +         +    D   DS         +         E +  + +        
Sbjct: 702 GEDEQPSRFLDDLEENGADDGGLDSRMKPPGRSLVLAELVGELREVVCDDKADPARRRRA 761

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPY-------ILNPSTIDTKGKTNLESLLSD 776
            ++   + +       P   +  +    +EP         ++PST++   K  L  ++  
Sbjct: 762 AKQLARLAEARVPGAHPSTWYGLLPASSDEPVHPPGDLIRISPSTVEILTKCPLRWMIER 821

Query: 777 NQ-------TFNRGLIIHKLLQVIFTLPEHKRKNFITS----YCTKNAKLWPAKEYKNLL 825
           +            G ++H L Q + +                     A  +  +E + + 
Sbjct: 822 HGGSDPAQLAAVTGTLVHGLAQAVASGSTDAELQAALDEAWVRVDAGAPWFSRRERRRVE 881

Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD---IIISGRIDQISIS-QQNIFIF 881
             +         +     ++  E  +  ++    +D   +++ GR+D++ +  +    I 
Sbjct: 882 QMLRNFTTWLEQSRKELKEAGVEQDIEVELPAGSEDEVRVLLRGRVDRVELDAEGRPVIV 941

Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           + KT        E        QL+ Y+  +
Sbjct: 942 DIKTGKVPVSGAEAEA---HPQLAAYQLAV 968


>gi|58038276|ref|YP_190245.1| DNA helicase II UvrD [Gluconobacter oxydans 621H]
 gi|58000690|gb|AAW59589.1| DNA helicase II UvrD [Gluconobacter oxydans 621H]
          Length = 682

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 102/732 (13%), Positives = 205/732 (28%), Gaps = 146/732 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    I   L      Q                 T    A  L+        E+   
Sbjct: 72  AAGEMKTRIAAAL---NIAQAPYWVGTFHAHGRRQLRTDPDIA-GLRPGFDVCDSEDSTK 127

Query: 68  LLSSFFLTQKFTPQKNIITQE----INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           ++       +   +  ++  +      K+   +  ++   ++  +   D     +   +T
Sbjct: 128 IVRRLL---EKAIEAGVMNADDGETFRKRVKSVSSRIAMLKENMVLPPDAVAWVEGRIAT 184

Query: 124 LAS--------LTLAKYLNAHYEEAKKKNCVLDFEDLIIN-TNDLLKKRDVSAWIRYKID 174
            A            A  L   Y+   +++   DF DL++  T  +L+        R    
Sbjct: 185 DAITEGDDIMVWRDAAVLYPAYQAMLRESNRADFADLLLWPTVTMLRDE----RYRRDWA 240

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
              + +L DE QD + +Q+  ++ L++D             LF VGD+ QSIY + GA  
Sbjct: 241 DRFDCVLADEFQDVNRLQFLWLKCLSKD----------HNELFVVGDDAQSIYGWRGANV 290

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + +    +              +I L  +FRST  IL+  + V S   +    +  +   
Sbjct: 291 RIIRSFLKEFPT--------GRMIALEQNFRSTGHILSAANAVISHDTSRLEKTLYTA-- 340

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                   G    V +     SQ +                          A  IA  I 
Sbjct: 341 -------SGDGEPVDILRHTGSQDE--------------------------ASGIAAEIG 367

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                           +  +D+ VL R    + L+           +I     +      
Sbjct: 368 RRALEG----------VPYEDMAVLYRFNHLSRLLEES----LLRARIPYELVNDTAFWQ 413

Query: 415 HLAIKDLMALGRFILSQED---DLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470
              +KD +A  R      +   D +F  ++  P        +         E  ++YE  
Sbjct: 414 RGVVKDALAFLRLTCFPYERQSDEAFRRIVNQPARGIGAKAMATFEQVADEEAISLYEAA 473

Query: 471 QKFANCGISKFQHVIKYIHELI---HIAQFCSPHDFFTLILGAKKGRQQ--FISRFGNEV 525
           ++       K    ++   ++I     +   S  +   +++               G   
Sbjct: 474 ERTVQGRTGKAADKLRGFLDVILKGARSDEPSLGERLRVLVEESGYLAMHHAAGEDGRTA 533

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           ++ L E L+                    +      +     +   V++MT+H +KGLE 
Sbjct: 534 LENLHELLSLANEFSSVE--------ELFDHAALGSESRDDDSVGRVKLMTIHGSKGLEF 585

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VFL+     +F  +                                            
Sbjct: 586 GHVFLIGWEDTLFPSRTNIDP--------------------------------------A 607

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YV +TR   ++ +        E+ +      ++   +  +       +      
Sbjct: 608 EERRLAYVALTRGRQRVSVSWCEFRRGEQANPSCFIDEIPLQARRDGWGRNLRRRPAFQR 667

Query: 706 KDEWIAYEWSTH 717
              +   +    
Sbjct: 668 GTVFNRQDQREA 679


>gi|108762524|ref|YP_631669.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622]
 gi|108466404|gb|ABF91589.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK
           1622]
          Length = 692

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 99/724 (13%), Positives = 194/724 (26%), Gaps = 132/724 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +    E +      +        +    + +                       E+   
Sbjct: 83  EMTRRVEELAGAFVDVRRILGGTFHHAAHVLLRQYAG-----VLGFSTNFTVLDREDARD 137

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L+ +    ++    K     ++     DL       Q     +        +  +     
Sbjct: 138 LMVTCIAERRLKSDKRFPRPDL---VLDLVSLAANLQQPVSHVLMDRRPQMLPLAPEVLA 194

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             A      +++ K +  ++DF+DL+++   LL        ++ ++ +    +L+DE QD
Sbjct: 195 AAA-----RFQQRKAQMHLMDFDDLLVHLKRLLTHHPD---VKAQLTERFRCVLVDEYQD 246

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q +++     +           + L  VGD+ QSIYSF GA+   ++         
Sbjct: 247 TNRLQGDLVDLFAGE----------RKDLTVVGDDCQSIYSFRGADFTNIIGFPERYP-- 294

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   S+  L  ++RST +IL + +   ++  N       +  +   +         
Sbjct: 295 ------GCSVHALTRNYRSTPEILRLANTSIALNTNQFPKVLTAARSPGVK--------- 339

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                 +V   D+                         A  +A  I  +           
Sbjct: 340 ----PLIVPARDAGEQ----------------------AAYVAQRIGELRDQGLSLEA-- 371

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                   + VL R    +       +       I           +   IKD++A  R 
Sbjct: 372 --------MAVLYRAHNHS----LELQLELTRRGIPFRVRSGVRFFEQSHIKDVLAHLRL 419

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------ETETVYEYIQKFANCGI 478
           + +  D+L+F  +++             + T            E     +          
Sbjct: 420 VNNPGDELAFKRVIRRVP-GVGPATAEHLWTALRASPEGTPLAEGLAHADVRAHLPRKAQ 478

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--VIDVLDEFLNFT 536
             FQ     +  L       SP      +L          + F  E    D + +   F 
Sbjct: 479 KGFQAFSDLMGRLTQPEASPSPGRLIEDVLAG-GYADFLRAEFSEEEHREDDVRQLAEFA 537

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            R E    +     I+ + ++              + + TVH AKGLE   VF++     
Sbjct: 538 GRFE--DVARFLSEIALVSEFAAGEALREEGPEACLTLSTVHQAKGLEWRAVFVLWLADG 595

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F      ++                                          RL YV +T
Sbjct: 596 RFPLSLATRLPEEEEEE----------------------------------RRLFYVALT 621

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA D L +    +                       E     +   S  + E  A     
Sbjct: 622 RARDTLALVYPQSVLPRDGERILLRPSRFLQELPGGEDAPFDRCILSTLEAEPEASVGQD 681

Query: 717 HHPE 720
             P 
Sbjct: 682 GPPP 685


>gi|257440773|ref|ZP_05616528.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257196747|gb|EEU95031.1| ATP-dependent DNA helicase PcrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 598

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 83/533 (15%), Positives = 158/533 (29%), Gaps = 117/533 (21%)

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+ ++  LT             + +  VGD+ QSIY F GA  + +L  +RI       
Sbjct: 2   AQFRLVSLLTG----------PEKNICVVGDDDQSIYRFRGATIENILNFERIFP----- 46

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL   + V       +G +           +R  +   VQ+
Sbjct: 47  ---GTKTIRLEQNYRSTSNILNAANCVIQHNTERKGKTL---------WTRNDEGDKVQV 94

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           +                             +    A  IA  I   +             
Sbjct: 95  Y--------------------------TAENEQDEAMHIADVIGEHLKEGG--------- 119

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               D  VL R    +  I            I           D   +KD+ +    + +
Sbjct: 120 -HLADHAVLYRMNAQSAPIESYF----TRAGIPHKIVGGQRFNDRKEVKDIHSYMSIVAN 174

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA-----NCGISKFQHV 484
             DD+    ++  P        +  I      +  ++ E I         +  I      
Sbjct: 175 ARDDVRLRRIINEPARKIGNTTVDVIADLAAQQGISMLEVISHADAYAKLSRAIMPLLKF 234

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS------RFGNEVIDVLDEFLNFTLR 538
            +   +L    +  +  +F   ++     +    +          + +  L + +N    
Sbjct: 235 WQIYEKLQESLETRTLDEFAQDVIEVTGYKAMLEADAAKGHEDAADRLQNLGQLVNNVKN 294

Query: 539 N--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              +    +SL+  + ++             + ++V +MT+H+AKGLE P VFL+     
Sbjct: 295 YCDQHGEDASLEGYLEDIALISDIDSYN--ESADQVVLMTIHSAKGLEFPYVFLIGMEEG 352

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           VF  +  K                                    ++  EE  RL YVG+T
Sbjct: 353 VFPSEMSK----------------------------------YSEADLEEERRLAYVGIT 378

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           RA  +L I    +     ++ +      + +         +       +   W
Sbjct: 379 RAKKELYISNSVSRMLYGRTQRNEPSRFLREIEPEYIEETRSPALERRSSMGW 431


>gi|319943538|ref|ZP_08017820.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Lautropia
            mirabilis ATCC 51599]
 gi|319743353|gb|EFV95758.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Lautropia
            mirabilis ATCC 51599]
          Length = 1490

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 109/766 (14%), Positives = 217/766 (28%), Gaps = 108/766 (14%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
            ++   + ++ + P L   L+      +                  L  A+++ A Y  A+
Sbjct: 427  RDAFGRGVDAQDPALVAMLEHPALAAMAALPGKLAALPDGRQATLLHAARWIEARYRRAR 486

Query: 142  KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
             +   + F+DL+      L   +    +  +I  +    +IDE QDT  +Q+ +   +  
Sbjct: 487  DQRSEMSFDDLLRQLAQALA-SEGGERLAERIRTQFPVAMIDEFQDTDPVQYSIFDRVYR 545

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +   + L  +GD KQ+IY+F GA+    LR +            +     L 
Sbjct: 546  -----VEKNCPEQALILIGDPKQAIYAFRGADIHTYLRAREA---------TRGRHYTLD 591

Query: 262  LSFRSTADILTVVDKVFSIPENAQGL----------SEDSTTTIRHRSSRIGQVGTVQLW 311
             +FRS+  ++  V+ VF + E   G            + +          +   G  ++W
Sbjct: 592  TNFRSSKAMVGAVNHVFEVAEQRPGGAFRFGAVSDDEDGAGAAASLPFLAVKAQGRKEIW 651

Query: 312  EQVVSQHDSQCNPQQESWTSYFD----------SLPQESSASILARRIAYTISNMIGTDT 361
            +           P   +WT   D           + + +  +  A   A  I+ ++    
Sbjct: 652  QDTKYP--GGAAPALVAWTMPEDAGNRLNAKSGHVSKGAYTAHYAEVTAREIARLLQAGA 709

Query: 362  IFSNGKKRV--------------------IQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                G                        ++  DI VLV   ++   +    R       
Sbjct: 710  DGQAGFASPVRLAEQPGHAGEGDSRRVSGVRPADIAVLVNSGREADAVRKALRAQGIR-- 767

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             SV  ++   +     +  L+   +              L + L       + ++     
Sbjct: 768  -SVYLSEDESVYASPVVPPLLRWLQAAAEPASGRLLRAALGTALCGLDALQLERLVHD-- 824

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                  E   +       +++ + +    L  +            +L    G +Q     
Sbjct: 825  ------ELHWEARVAQFQRYREIWRSQGVLPMVRHMLQDFGVVPRLLAQ-GGERQLTDLL 877

Query: 522  GNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                   L E L      L  E      LQE     E      ++   ++   VR++TVH
Sbjct: 878  ------HLSELLQQASTRLEGEHALVRYLQEQRDAPEGEREARRQRLESDDARVRVVTVH 931

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE P+VFL    +          +    +      +P              + +  
Sbjct: 932  KSKGLEYPLVFLPFFCAVRPVEAKDALLRWHDADGQLRLVPGRSAD--------DETVAA 983

Query: 639  LKKSTQEEYNRLLYVGMTRASDQL----------------IICKHSNTSNEKKSNQRTWY 682
                   E  R LYV +TRA                     +   S  S +         
Sbjct: 984  ADAERLGEDLRKLYVALTRARHATWVGLGALENLHRSAAGHLLGLSGESGDGHRLFAALQ 1043

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET------IKQLMDE 736
            + V                 S+  D     + +     +                 ++  
Sbjct: 1044 EQVEQWREGIAPGVLAVEEASLPADGHGDGDMAQAALWSPSERTSGRGAVAWKTPPMLPG 1103

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
            Q  P+   +       E      S  D+     +   ++ +    R
Sbjct: 1104 QSWPRWWIASYSALEVEDVATTLSESDSPSDRRVHETVAVHGDAER 1149



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 67/312 (21%), Gaps = 78/312 (25%)

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
             E V                +E   +  E+     +  +     EQ+    ++       
Sbjct: 1138 HETVAVHGDAERAKPVTGDGWEPGRNVDESDAPYGDSALTDTWAEQRAADAVWQRHLVQA 1197

Query: 752  NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
             E   L     +        S+    +    G  +H LL+                   +
Sbjct: 1198 AEASALAVVDSEQGKGGLGSSVHDFARGPQAGTFLHGLLEWAGRQGFAALAKDPARLAEQ 1257

Query: 812  NAKLW-----PAKEYKNLLLSITRLLENPM---------------------------MTT 839
                             L   + RLL  P+                            T+
Sbjct: 1258 VRWRLQRMPDWQPWQSLLTDWLVRLLTQPLPLDAGGRDRIQGNVEEALVGAGPVPLGGTS 1317

Query: 840  AMSCDSYSEVSVSGKINCPKKDI-----------------------------IISGRIDQ 870
            + +     +  V        +DI                             ++ G ID 
Sbjct: 1318 SFTLAGLRQYQVEMSFMLAVQDIDLPALDAWVRQHTFSGAARPPLLPGQLNGMLKGFIDL 1377

Query: 871  ISISQQNIFIFEYKTHHHVPQEI---------EHIPYTHIAQLSIYEKILKDSYP----- 916
            +   +    + +YK++     +            + + +  Q   Y   L          
Sbjct: 1378 VFEHEGRFHVLDYKSNWLGASDEAYRGETMQAAVLAHRYELQYLFYLLALHRLLKVRLPD 1437

Query: 917  ---NKSLVCLLI 925
               ++ +   L 
Sbjct: 1438 YDYDRHVGGALY 1449


>gi|289764400|ref|ZP_06523778.1| ATP-dependent nuclease subunit A [Fusobacterium sp. D11]
 gi|289715955|gb|EFD79967.1| ATP-dependent nuclease subunit A [Fusobacterium sp. D11]
          Length = 898

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 135/868 (15%), Positives = 290/868 (33%), Gaps = 126/868 (14%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
           N + +  + +  +      K   +   +        +         L+  +   Y+  K 
Sbjct: 128 NKLKKASDAEHKEYINARHKELRKV--LSKEIFNEVLIPYEEKIFELSSEIYNLYDSFKI 185

Query: 143 KNCVLDFEDLIINTNDL-------LKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWE 194
           ++    F D+ I T          L+  +    I ++ +D  I  I IDE QDTS++QW+
Sbjct: 186 RDKKFTFSDIAIYTYMAIFNKNNTLRDENGLTDIFFETLDMNIEAIFIDEFQDTSILQWK 245

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++   T+            +T+  VGDEKQSIY +   E +     + I + +       
Sbjct: 246 ILYEFTK----------KAKTVICVGDEKQSIYGWRDGEKRLFENLETILEAKED----- 290

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                L  S+RS  +I++  ++ F   E                         ++ W+  
Sbjct: 291 ----SLGKSYRSDRNIVSYCNQFFKAIEK------------------------IEDWKFP 322

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
            S+ +S+ +   ++          E                 +  +T+     K+     
Sbjct: 323 TSEVNSKNDGYVKAICIKDLQDEIEDEEQ----------KKKVNINTVLLQELKKFEPYD 372

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           ++ ++ R   +   I  L    K    I  + N+   ++++  I +   L ++++  E++
Sbjct: 373 NVAIIARTNAELSEIANLLEDEK----IPYILNNEKNISEYSGIFECFELLKYLV-YENE 427

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI---SKFQHVIKYIHEL 491
           L+    + SPL NF  D+I  +   + E  +   + Q           K    ++ I  L
Sbjct: 428 LALFNFISSPLSNFGTDEIEILLKNKEELFSYINFSQDNDFINSLENKKIIRFLEKIVFL 487

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
               +  +  D    I+   +    F      +    + +F   T          L+ L 
Sbjct: 488 KKNYRDFTVQDLIFEIIKKFQFIDYFNKDNEVK---NIYDFYLLTNYYSSI----LELLN 540

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               +    I    ++    V ++T+H +KGLE    F++  G +  +        +   
Sbjct: 541 DY--KENKLILSDTNSEKKGVELVTIHKSKGLEFKTTFVIKNGKKSKTDDIDFLFEMNDK 598

Query: 612 LNDDPGIPIWIPQ-SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
            ++                    + I++  K  +EE     YV +TR  + LI+      
Sbjct: 599 YDETVFSLFCKKGYKSILETCFEERIENYDKKIKEEEINNFYVALTRPKNNLIVIYEDRL 658

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             EK   + +  ++     + ++   +  + N     +   +  S  +  +    +E   
Sbjct: 659 FEEKSLKEFSSEEL--KGINLEDISFEKSVINDFFDCKIGEFSSSEKNSNSDDTAKENLE 716

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
             L + Q       S I  +  E   +           + + LL   +    G+++H   
Sbjct: 717 SDLFNSQPY---FISSIYENEKETEKI--------EINDSKFLLETEEKRMIGILVHYFF 765

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSCD---S 845
           + +    + + +   T    K    +  ++   +    +I   L         S      
Sbjct: 766 ENLKYGTDEEVEFSKTLCYKKYLSYFGEEKLNKIFSKENIEMFLTKD--KEIFSKKWDYI 823

Query: 846 YSEVSVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTH 900
           YSE       +  +K      RID++ I         I+I ++KT               
Sbjct: 824 YSEY---VLYDYEEKKEY---RIDRLMIKDNGDGTGEIYIVDFKTGGKDES--------- 868

Query: 901 IAQLSIYEKILKDSYP---NKSLVCLLI 925
             QL  Y+++LK ++    N ++    +
Sbjct: 869 --QLKTYKEVLKKNFEELQNYNIRTKFL 894


>gi|314966447|gb|EFT10546.1| UvrD/REP helicase [Propionibacterium acnes HL082PA2]
 gi|315103756|gb|EFT75732.1| UvrD/REP helicase [Propionibacterium acnes HL050PA2]
 gi|327327269|gb|EGE69045.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL103PA1]
          Length = 1061

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 110/955 (11%), Positives = 267/955 (27%), Gaps = 109/955 (11%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMAARLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ + +        S          S+  G
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSSRLRRRANHSTSTDAG 323

Query: 304 ------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                      +L  ++             +W S            ++A  +A       
Sbjct: 324 TVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAE----- 378

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                    +     +    V          +   +    +   ++ + ++     D   
Sbjct: 379 --GIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNPLAGIDRSV 436

Query: 418 IKDLMALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-N 475
           I  L    R +   + D +    +   P    +          R E  +  E        
Sbjct: 437 IHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAELDTACEVY 496

Query: 476 CGISKFQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNE 524
                 + + + +  +    Q          + H+    +            R     + 
Sbjct: 497 SVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRRRAVAGDST 556

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVH 578
               LD   +     E     +       L      EQ P    R    + + V ++T H
Sbjct: 557 ANRDLDGLCSLFDMAESAQTMAGITGGQRLIEVVRQEQIPADRARESDEDRDGVSVVTAH 616

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             KG E  VV +       +   +     +        G+      S             
Sbjct: 617 RIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS------------- 663

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                     RLL V  +RA  QL++C   +    ++ S        + D+  +      
Sbjct: 664 ---ENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLNFTSL 720

Query: 698 IKLTNSI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKND 750
            +L   +     ++ E            +     E   ++L+ +           P + D
Sbjct: 721 TELVGELRQVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQAD 780

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL-LQVIFTLPEHKR 801
           +     L+ S +           ++     +         G ++H++  + +      + 
Sbjct: 781 MAGEIELSASHVGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAENMDQWSLPEA 840

Query: 802 KNFITSY---CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
              + +       +A+   + E  +   ++ R   +  +         +EV V G I  P
Sbjct: 841 LAELEAAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVP 898

Query: 859 KKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 899 SGTARVRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|254303004|ref|ZP_04970362.1| exodeoxyribonuclease V beta subunit [Fusobacterium nucleatum subsp.
            polymorphum ATCC 10953]
 gi|148323196|gb|EDK88446.1| exodeoxyribonuclease V beta subunit [Fusobacterium nucleatum subsp.
            polymorphum ATCC 10953]
          Length = 1066

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 134/867 (15%), Positives = 285/867 (32%), Gaps = 133/867 (15%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            N + +  + +  +      +   E   +        +         L+  +   Y+  K 
Sbjct: 305  NKLKKASDAEHKEYINARHEELREI--LSKEIFNEVLIPYEEKIFELSSEIYNLYDNFKI 362

Query: 143  KNCVLDFEDLIINTN-------DLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWE 194
            ++    F D+ I T        + L+  +    I ++ +D  I  I IDE QDTS++QW+
Sbjct: 363  RDKKFTFSDIAIYTYMAIFNKNNALRNENGLTDIFFETLDMNIEAIFIDEFQDTSVLQWK 422

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++   T+            +T+  VGDEKQSIY +   E +     + I +         
Sbjct: 423  ILYEFTK----------KAKTVICVGDEKQSIYGWRDGEKRLFENLETILE--------- 463

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                 L  S+RS  +I++  ++ F   E                         ++ W+  
Sbjct: 464  AKKDSLDKSYRSDRNIVSYCNQFFKTIEK------------------------IEDWKFP 499

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
            +S+ +S+ +   ++          E                 +  +TI     K+     
Sbjct: 500  ISEVNSKNDGYVKAICIKDLQDKVEDEEQ----------KKELNINTILLQELKKFEPYD 549

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            ++ ++ R   +   I  L    K    I  + N+   ++++  I +   L ++++  E++
Sbjct: 550  NVAIIARTNAELSEIANLLEDEK----IPYILNNEKNISEYSGIFECFELLKYLV-YENE 604

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETV--YEYIQKFANCGISKFQHVIKYIHELI 492
            L+    + SPL NF  D+I  +   + E  +   +     F N    K    ++ I  L 
Sbjct: 605  LALFNFISSPLSNFGTDEIEILLKNKKELFSYINFSQDNDFINSLDKKIIRFLEKIVFLK 664

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
               +  +  D    I+   +    F      +    + +F   T          L+ L  
Sbjct: 665  KNYKNFTVQDLIFEIIKKFQFIDYFNKDNEVK---NIYDFYLLTNYYSSI----LELLND 717

Query: 553  ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
               +         ++    V ++T+H +KGLE    F++    +  +        +    
Sbjct: 718  Y--KENKLSLSDTNSEKKGVELVTIHKSKGLEFKTTFVIKNSKKSKTDDIDFLFEMNDHY 775

Query: 613  NDDPGIPIWIPQ-SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            ++                    + I++  K  +EE     YV +TR  + LI+       
Sbjct: 776  DETVFSLFCKKGYKSILETCFEERIENYDKKIKEEEINNFYVALTRPKNNLIVIYEDRLF 835

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
             +K   +           + ++   +  L N     +     +S  +  N    +E    
Sbjct: 836  EDKSLKE----------INLEDISFEKSLINDFFDCKIGELSFSEKNSNNEDTAKENLES 885

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
             L + Q          + +            +     + + LL   +    G+++H   +
Sbjct: 886  DLFNSQSYFSSSIYENEEES-----------EKIDINDSKFLLETEEKRMIGILVHYFFE 934

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSCD---SY 846
             +    + + +   T    K    +  ++   +    +I   L         S      Y
Sbjct: 935  NLKYGTDEEVEFSKTLCYKKYLSYFGEEKLNKIFSKENIEMFLTKD--KEIFSKKWDYIY 992

Query: 847  SEVSVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHI 901
            SE       +  +K      RID++ I         I+I ++KT                
Sbjct: 993  SEY---VLYDYEEKKEY---RIDRLMIKDNGNGTGEIYIVDFKTGGKNES---------- 1036

Query: 902  AQLSIYEKILKDSYP---NKSLVCLLI 925
             QL  Y+++LK ++    N S+    +
Sbjct: 1037 -QLKTYKEVLKKNFEELQNYSIKTKFL 1062


>gi|94265519|ref|ZP_01289267.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
 gi|93453960|gb|EAT04306.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
          Length = 775

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 104/655 (15%), Positives = 192/655 (29%), Gaps = 125/655 (19%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  +     L     +N HY++ K  + ++D++DL++N   LL+       +R ++
Sbjct: 184 DLVEAEHEHLAEFLDDILAINQHYQQFKLDHGLMDYDDLLLNWRRLLRDD---REVREEL 240

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            Q    IL+DE QDT+ IQ E++R L              R + AVGD+ QSIYSF GA+
Sbjct: 241 AQRFQAILVDEYQDTNPIQAEIVRLLAAQ----------RRNVMAVGDDAQSIYSFRGAD 290

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            + ++                  ++ L  ++RS   IL V + + +           S  
Sbjct: 291 FRNIMEFPDHFP--------GTRVVRLEENYRSIPQILEVGNAIIAPAPVKYPKKLFSRL 342

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               R          +                                    AR +   I
Sbjct: 343 EGGSRPLFHAARNESE-----------------------------------QARFVVEKI 367

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +            R + A  I VL R    +  +            I         LT
Sbjct: 368 KELR-----------RELDASQIAVLFRSGFHSYKLELELTA----NGIDFEKRGGLKLT 412

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCML--------KSPLFNFSEDDIFKICTQRHETET 465
           +   IKD++A  R + +  D LS+  +L        K+         + +      + + 
Sbjct: 413 ESAHIKDVLAHFRVLCNPADRLSWHRLLLLLDKIGPKTAARIIDRLPLLEQVAGPGDGQR 472

Query: 466 VYEYIQK--FANCGISKFQHVIKYIHELIHIAQF--CSPHDFFTLILGAKK-GRQQFISR 520
             +       A      +   ++ + +L+        +P +    +L   +   ++    
Sbjct: 473 PLDGSLAALKAFPAGKAWGEGMQKLLQLLADINDPGLAPAELLEQVLIYYQPLLRRLYPD 532

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                   L++        E     S+ + ++EL   P + +         V + TVH+A
Sbjct: 533 DYPRRQRDLEQLRPLLAGYE-----SMDDFLAELALDPSSPEVDDDGGGRLV-LSTVHSA 586

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE   VF++      F                                          
Sbjct: 587 KGLEWEAVFVIHLAEGKFPANQAVG----------------------------------- 611

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            +  EE  RLLYV  TRA   L +     ++   +                +        
Sbjct: 612 AAQYEEERRLLYVAATRAKRWLYLVYPRQSTGADRRPLFCEPSPFLAPLPPELLRGSGSG 671

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             +  + +W +   +   P     E                +  +          
Sbjct: 672 GEAAGRPDWPSAPPAGDDPWELAAENSRVGPGPPAGLPGSGQRSAMAGESAALTV 726


>gi|94264521|ref|ZP_01288308.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
 gi|93455080|gb|EAT05307.1| UvrD/REP helicase [delta proteobacterium MLMS-1]
          Length = 771

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 106/655 (16%), Positives = 192/655 (29%), Gaps = 125/655 (19%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  +     L     +N HY++ K  + ++D++DL++N   LL+       +R ++
Sbjct: 184 DLVEAEHEHLAEFLDDILAINQHYQQFKLDHGLMDYDDLLLNWRRLLRDD---REVREEL 240

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            Q    IL+DE QDT+ IQ E++R L              R + AVGD+ QSIYSF GA+
Sbjct: 241 AQRFQAILVDEYQDTNPIQAEIVRLLAAQ----------RRNVMAVGDDAQSIYSFRGAD 290

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            + ++                  ++ L  ++RS   IL V + + +           S  
Sbjct: 291 FRNIMEFPDHFP--------GTRVVRLEENYRSIPQILEVGNAIIAPAPVKYPKKLFSRL 342

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               R          +                                    AR +   I
Sbjct: 343 EGGSRPLFHAARNESE-----------------------------------QARFVVEKI 367

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +            R + A  I VL R    +  +            I         LT
Sbjct: 368 KELR-----------RELDASQIAVLFRSGFHSYKLELELTA----NGIDFEKRGGLKLT 412

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCML--------KSPLFNFSEDDIFKICTQRHETET 465
           +   IKD++A  R + +  D LS+  +L        K+         + +      E + 
Sbjct: 413 ESAHIKDVLAHFRVLCNPADRLSWHRLLLLLDKIGPKTAARIIDHLPLLEQEAGPGEGQR 472

Query: 466 VYEYIQK--FANCGISKFQHVIKYIHELIHIAQF--CSPHDFFTLILGAKK-GRQQFISR 520
             +       A      +   ++ + +L+        +P +    +L   +   +     
Sbjct: 473 PLDGSLAALKAFPAGKAWGEGMQKLLQLLADINDPGLAPAELLEQVLIYYQPLLRHLYPD 532

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                   L++        E     S+ + ++EL   PP+ +         V + TVH+A
Sbjct: 533 DYPRRQRDLEQLRPLLAGYE-----SMDDFLAELALDPPSPEVDDDGGGRLV-LSTVHSA 586

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE   VF++      F                                          
Sbjct: 587 KGLEWEAVFVIHLAEGKFPANQAVG----------------------------------- 611

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            +  EE  RLLYV  TRA   L +     ++   +                +        
Sbjct: 612 AAQYEEERRLLYVAATRAKRWLYLVYPRQSTGADRRPLFCEPSPFLAPLPPELLRGSGSG 671

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
             +  + +W +   +   P     E                +  +          
Sbjct: 672 GEAAGRPDWPSAPPAGDDPWELAAENSRVGPGPPAGLPGSGQRSAMAGESAALTV 726


>gi|271969568|ref|YP_003343764.1| superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270512743|gb|ACZ91021.1| Superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 1228

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 124/853 (14%), Positives = 242/853 (28%), Gaps = 122/853 (14%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
              + + E    +             +       +      T     + L+   +     
Sbjct: 75  ELAIRVRERLNGLVAAEQVPAELLEGEPTISTYHAYAARLVTDHALREALEPTMRLVSPA 134

Query: 64  ERFSLLSSFFLTQKF-----TPQKNIITQEINKKSPDLKEKLK----------KSQDEFI 108
             + L                     +T+ + + + +L E L+             D + 
Sbjct: 135 VSWQLAVRVVSAYDGPMEQIEWGPATVTRAVLELAGELSEHLRGPQDVREVGAWLADRYG 194

Query: 109 KI-----RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           ++       +       ++    L L       Y+  K+   V+D  D +     +  K 
Sbjct: 195 ELPGSPTLPQRRPLATQRAREQLLPLV----EAYDRLKRSREVVDHGDQMALAARIAAKH 250

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              A +          +L+DE QDTS  Q  ++RSL                + AVGD  
Sbjct: 251 ---AEVGEIERGRFAVVLLDEYQDTSHAQLVLLRSLFG----------GGHPVTAVGDPC 297

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + GA    + R  R      T +G+   +  L +SFR+   +L V  +V    + 
Sbjct: 298 QSIYGWRGASAGNLTRFPRDFT---TASGELAPVRRLSISFRNGDAVLDVAARV----QL 350

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
              +       +    +R+ + G V       +  ++       +     +S P      
Sbjct: 351 PLRMEAREVPVLVPGGNRVER-GRVVCAFHETADDEAAWVADGIARVLGGESAPDGMPWG 409

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              R+ A             + G  + +Q  D+ +L RKR   P      R    +  I 
Sbjct: 410 EGERKKAKQ----------SAWGGPQCLQPHDVAILARKRSQFP----ALRRALEERGIP 455

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR--- 460
           V       L     + D++A  R +       + V +L  P +     D+ ++  +    
Sbjct: 456 VEVVGLGGLLTVPEVSDIVATLRVLYDPTAGDALVRLLSGPRWRIGPADLKELGERAREL 515

Query: 461 -----------------------HETETVYEYIQKFANCGIS----------KFQHVIKY 487
                                   E  ++ + + +  +              +   + + 
Sbjct: 516 NRETREGGSMASDPLDQVVADMAEERGSLIDALDELPDRPEWQDLFSPLARVRLLAMAQE 575

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNFTLRNE-QN 542
           +  L          D    I        +  +R            LD FL+   R    +
Sbjct: 576 LRILRAHTGQ-PLPDLIIEIERRLGLDIEVAARGTAIGPFAARADLDAFLDAAARFAGDS 634

Query: 543 SYSSLQELISELEQYPPTIKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              +L   ++ L+          +      N V++MT+H +KGLE PVV +      +  
Sbjct: 635 EDPTLGAFLAFLKAADEEENGLDAGRVGESNSVKLMTIHASKGLEWPVVVIPGMSQALSK 694

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRN----------------NIVSDLIKHLKKST 643
              +    + P+           P+                       +++  +  +   
Sbjct: 695 AGTLTVGTMFPARPTTSPKWTDNPRKLPYPLRGDASDLPRLGGLSKEELAEFDERCRDRD 754

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             E  RL YV +TRA   LI   +   S  K      +   + ++              +
Sbjct: 755 LLEERRLAYVAVTRAHYLLIASGYRWGSAAKPLEPSDFLVEIRETCGRVSVWAPEAGEGA 814

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
            N    +A       P      R E +       +      +    D       + S   
Sbjct: 815 TNPL--LAEPAEAGWPVTPDGLRYEAVLDGATMVEAALAALAGQGGDPAASRPRDGSAQA 872

Query: 764 TKGKTNLESLLSD 776
              +    S  SD
Sbjct: 873 PGAENAPFSDFSD 885



 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/516 (7%), Positives = 111/516 (21%), Gaps = 33/516 (6%)

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            L   S++++ +   +  + + + E    +     + +  +I   +     A+   P DF 
Sbjct: 735  LGGLSKEELAEFDERCRDRDLLEERRLAYVAVTRAHYL-LIASGYRWGSAAKPLEPSDFL 793

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              I         +    G    + L          E     +   L              
Sbjct: 794  VEIRETCGRVSVWAPEAGEGATNPL-----LAEPAEAGWPVTPDGL-RYEAVLDGATMVE 847

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             +      +      ++  +          +  FS         +P  +++   P     
Sbjct: 848  AALAALAGQGGDPAASRPRDGSAQA-PGAENAPFSDFSDIPFPDVPPEDEEVPFPEAPED 906

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT--RASDQLIICKHSNTSNEKKSNQRTWY 682
                   V +              R          A  + +         E  +      
Sbjct: 907  EDVLFLEVPEFFDDPDDEEATSRARQDVSAEAVHEAVHEAVHEGGRVPGEEPGNGHVLPE 966

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                          +            +                    ++ ++ ++   +
Sbjct: 967  GEPGPEHRRVPEEGQEPGNERAGALADLRGWDKERAKAWERDTELLLRERAVNRRRGGGQ 1026

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
            +  P    ++    L         +              RG   H+ L+        +  
Sbjct: 1027 VELPTHLTVSSLVTLASDPKTLARQVRRPVPRKPTPLARRGTSFHRWLE-------SRWG 1079

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINCPK 859
                    +      +  ++         ++   +        ++    + V        
Sbjct: 1080 Q--QRLLDEMELPGSSDGFEE------TDIQLDQLRDRFEESEWAGREPLDVEVPFETMI 1131

Query: 860  KDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YP 916
             D ++ GR+D +         + ++KT      +            + Y          P
Sbjct: 1132 ADRLVRGRMDAVFELPDGRYEVVDWKTGQRPEGKKAEAAAAVQL--AAYRLAWSHLADVP 1189

Query: 917  NKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
               +     +V   +          +    +   IP
Sbjct: 1190 LAQVSAAFHFVRLNETVRPVNLLDERGLVRLIESIP 1225


>gi|34557616|ref|NP_907431.1| putative recombination protein RecB [Wolinella succinogenes DSM
           1740]
 gi|34483333|emb|CAE10331.1| HELICASE [Wolinella succinogenes]
          Length = 905

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 128/939 (13%), Positives = 270/939 (28%), Gaps = 194/939 (20%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
              +  ++  E I + L  L + +     +Y     E  +  +++ A  ++     +   
Sbjct: 154 ELSVEESKGVEAILRFLRDLWHKEGELSQEYRPTLREFDSKELMEAAFKIKNRVLGEEGA 213

Query: 64  ERFSLLSSFFLTQKFTPQ--KNIITQEINKKSPDLKE----KLKKSQDEFIKIRDRFNTY 117
              +  +  F   +   +  K  +T++   +    K+     L     +  ++   +   
Sbjct: 214 STKAKEAVDFEDVEGLLRRGKTWLTKDSLVEYNYFKKLSIGDLDGELFKIKELLVDYFNS 273

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           K  +     L L        E   +K  +L F+++      LL +     ++ +++D  I
Sbjct: 274 KESQLLGRLLRLLGIFKESLERWSQKERILGFDEVTQGAYRLLGEEIDREFLYFRLDGAI 333

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            HILIDE QDTSL+Q++++  L E+   G +  S  RT F VGD KQSIY F G+     
Sbjct: 334 THILIDEFQDTSLLQFKILEPLIEEIKSGIS-RSLYRTFFYVGDMKQSIYRFRGSHALLF 392

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
               R              + ELP ++RS A ++  +++VF+             +    
Sbjct: 393 EWASR-----------GMKVKELPNNYRSCAVVVDFINQVFA---------PHYKSYSPQ 432

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
              + G    V                                    +   +   +  ++
Sbjct: 433 IPQKSGGFVAV-------------------------------LQEEEVLESLKKELGFLL 461

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
              T             DI +LV    D   +    +         VV      L +   
Sbjct: 462 EQGT----------TPSDIAILVFSNDDVLRVAECLKDSFEAL--KVVTETSARLLEQRE 509

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           ++ L     ++   ++           +   S   +          E +       ++  
Sbjct: 510 VRALHRALFYLQEGKE-----------VDGVSFLSLIGEPPHLDRLEFLRSLSSLKSSQI 558

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
           +       K            S   F  + L      +  +        + LDE L+   
Sbjct: 559 LLALMEHFKLFSA--------SARRFLEISLEYPLVDELLL------RCESLDEPLSA-- 602

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                                             VRI+T+H +KGLE P V +       
Sbjct: 603 -----------------------------EELEGVRILTIHKSKGLEFPHVIV--MDRLS 631

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   +       +   I   + + ++ ++  +  ++  K++  ++   +LYV  TR
Sbjct: 632 NPSNQSPALFYDYEGINLRAILYRLKERENFDSTYARALEKEKEAKAQDLLNMLYVAFTR 691

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A + L I + S     +     +                                     
Sbjct: 692 AKESLHILQKSEKGAMESLALESCT--------------------------------KGE 719

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P   P +    +                      E   +                    
Sbjct: 720 IPSGLPPKPSAMLPSKGRTFVSKDFGRQKDFLKKEESQRVYA-----------------P 762

Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
           +    G   H  L+          +  +T    +        + K ++     +    ++
Sbjct: 763 RAVYYGEAFHLCLEHRLHYASS-PEKLMTLVLNQYGHFLNKNDDKEIITKCMDVTNGNLL 821

Query: 838 TTAMSCD-SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
              ++      E+            +    RID +   ++ +F+ +YK+          +
Sbjct: 822 RPILNQGRVKCEIPF-----LENGKMR---RIDLLIEGEERVFVVDYKSTSI-------L 866

Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              +  Q+  Y+     +    S+  LLIY  E ++  +
Sbjct: 867 KEGYYQQVESYKTFASKALQKPSVGFLLIYGEEIRLIEV 905


>gi|314920397|gb|EFS84228.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3]
 gi|314956489|gb|EFT00777.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1]
 gi|314957333|gb|EFT01436.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1]
 gi|327452696|gb|EGE99350.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2]
 gi|328752852|gb|EGF66468.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2]
          Length = 1058

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 111/950 (11%), Positives = 261/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 48  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 107

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 108 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 165

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 166 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 219 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 269 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 319

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 320 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 378

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ +  +     D   I  L 
Sbjct: 379 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLANPLAGIDRSVIHRLE 438

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 439 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 498

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 499 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 558

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 559 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 618

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 619 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 662

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 663 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 722

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 723 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 782

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 783 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 842

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 843 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 900

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 901 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 947


>gi|256845409|ref|ZP_05550867.1| exodeoxyribonuclease V beta subunit [Fusobacterium sp. 3_1_36A2]
 gi|256718968|gb|EEU32523.1| exodeoxyribonuclease V beta subunit [Fusobacterium sp. 3_1_36A2]
          Length = 1075

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 128/865 (14%), Positives = 286/865 (33%), Gaps = 120/865 (13%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            N + +  + +  +      +   E   +        +         L+  +   Y+  K 
Sbjct: 305  NKLKKASDAEHKEYINVRHEELREI--LSKEIFNEVLIPYEEKIFELSSEIYNLYDSFKI 362

Query: 143  KNCVLDFEDLIINTN-------DLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWE 194
            ++    F D+ I T        + L+  +    I ++ +D  I  I IDE QDTS++QW+
Sbjct: 363  RDKKFTFSDIAIYTYMAIFNKNNALRDENGLTDIFFETLDMNIEAIFIDEFQDTSILQWK 422

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++   T+            +T+  VGDEKQSIY +   E +     + I + +       
Sbjct: 423  ILYEFTK----------KAKTVICVGDEKQSIYGWRDGEKRLFENLETILEAKED----- 467

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                 L  S+RS  +I++  ++ F   E                         ++ W+  
Sbjct: 468  ----SLGKSYRSDRNIVSYCNQFFKAIEK------------------------IEDWKFS 499

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
             S+ +S+ +   ++          E                 +  +TI     K+     
Sbjct: 500  TSEINSKNDGYVKAICIKDLQDKIEDEEQ----------KKELNINTILLQELKKFYPYD 549

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            ++ ++ R   +   I  L    K    I  + N+   ++++  I +   L ++++  E++
Sbjct: 550  NVAIIARTNAELSEIANLLEDEK----IPYILNNEKNISEYSGIFECFELLKYLV-YENE 604

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI---SKFQHVIKYIHEL 491
            L+    + SPL NF  D++  +   + E  +   + Q           K    ++ I  L
Sbjct: 605  LALFNFISSPLSNFGTDEVEILLKNKEELFSYINFSQDNDFINSLENKKIIRFLEKIVFL 664

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                +  +  D    I+   +    F      +    + +F   T          L+ L 
Sbjct: 665  KKNYRDFTVQDLIFKIIKKFQFIDYFNKDNEVK---NIYDFYLLTNYYSSI----LELLN 717

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                +         ++    V ++T+H +KGLE    F++    +  +        +   
Sbjct: 718  DY--KENKLSLSDTNSERKGVELVTIHKSKGLEFKTTFVMKNSKKSKTDDIDFLFEMNDK 775

Query: 612  LNDDPGIPIWIPQ-SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             ++                    + I++  K  +EE     YV +TR  + LII      
Sbjct: 776  YDETVFSLFCKKGYRHILETCFKERIENYDKKIKEEEINNFYVALTRPKNNLIIIYEDRF 835

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
              +K  N+ +  ++     + ++   +  + N     +      S +  +N  +  E+  
Sbjct: 836  FEKKSLNEFSSEEL--KGINLEDISFEKSVINDFFDCKIGEISLSNNSQKNENVIEEDLE 893

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
              L+  Q          + +                  + + LL   +    G+++H   
Sbjct: 894  SDLLSSQPYFTSSIYENEEEAE-----------NIEINDSKFLLETEEKRMIGILVHYFF 942

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSCDSYSE 848
            + +    + + K   T    K    +  ++   +    +I   L         S   ++ 
Sbjct: 943  ENLKYGTDEEVKFSKTLCYKKYLSYFGEEKLDKIFSKENIEMFLTKD--KEIFSKK-WNH 999

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            +     +   ++      RID++ I +       I+I ++KT                 Q
Sbjct: 1000 IYSEYVLYDYEEKK--EYRIDRLMIKENGDGTGEIYIVDFKTGGKDES-----------Q 1046

Query: 904  LSIYEKILKDSYPN---KSLVCLLI 925
            L  Y+ +LK ++       +    +
Sbjct: 1047 LKTYKDVLKKNFEELQKYKIRTKFL 1071


>gi|187779932|ref|ZP_02996405.1| hypothetical protein CLOSPO_03528 [Clostridium sporogenes ATCC
           15579]
 gi|187773557|gb|EDU37359.1| hypothetical protein CLOSPO_03528 [Clostridium sporogenes ATCC
           15579]
          Length = 670

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 97/551 (17%), Positives = 191/551 (34%), Gaps = 113/551 (20%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YEE K K  +LDF+DL IN   LLK+      I     +   +IL+DE QD   +Q  ++
Sbjct: 165 YEEYKDKKELLDFDDLQINMFKLLKEDG---RILNGYKKLFKYILVDEFQDCDTLQINIL 221

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L           S   +LFAVGDE Q IYSF G++P+ ++      +           
Sbjct: 222 QML-----------SKGNSLFAVGDEDQCIYSFRGSKPECMVNFNHYFEN--------GE 262

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I L  ++RS  +I+ +   +    +       ++                         
Sbjct: 263 KIYLRYNYRSPKNIVEISKNLIQNNKLRNNKKIEAYNDYDKN------------------ 304

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                         S+ +   Q           A  IS       I +N      + KDI
Sbjct: 305 ----------IVLKSFLNEREQ-----------AEEISK------IINNIINERYEYKDI 337

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R   ++  +T     L    +I     D  +   +H   +D++A  +  +   D  
Sbjct: 338 AILYRTNMESRSLTD----LFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDPYDKK 393

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           SF+ ++  P    S+ ++ ++   ++   + ++ +++  +    + ++ ++ + + I+  
Sbjct: 394 SFLKIINKPFRYVSKLNVERVRRYKYAKNS-FDILKEQKDIQPFQIKN-LENLEKDINKM 451

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR--NEQNSYSSLQELISE 553
              S  D    I+      +++I  +   +    +E L            Y+S+   +  
Sbjct: 452 NKMSAQDAIGHIMHTLGY-EEYIKEYSERIKIDKEELLQIVDELKEAGEGYTSILTFLVH 510

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +E+    I +    N + V + T+H  KG+E   V +V+       +    +   +    
Sbjct: 511 VEEVEKEINK-KEINEDSVILSTIHGVKGMEFKNVVIVNCNEDNIPYSKSDEEINIEEER 569

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                               L YVG+TRA + L +        +
Sbjct: 570 R-----------------------------------LFYVGITRAKENLYLTVPKVIRGK 594

Query: 674 KKSNQRTWYDM 684
            K       + 
Sbjct: 595 NKETSNFIKEC 605


>gi|188995913|ref|YP_001930165.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277]
 gi|188595593|dbj|BAG34568.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277]
          Length = 1074

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 125/865 (14%), Positives = 261/865 (30%), Gaps = 110/865 (12%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS--LTLAKYLNAHYEEAKKKN 144
              I        ++           R+        +S      L +   L    E  +++ 
Sbjct: 300  AAILSAYQSGLKECLTEMAALYLGREWQEYSTAKQSLPFLNRLGIISDLWRQIEGIRQEE 359

Query: 145  CVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
              +    LI +   LL        + ++  KI   I H +IDE QDTS +Q+E  + L  
Sbjct: 360  NKM----LISDAPSLLHRIIDGSETPFVYDKIGVRIEHEMIDEFQDTSSLQYENFKPLLS 415

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +       +        VGD KQSIY F  A+ + +            +  +    + LP
Sbjct: 416  ESLAHGKYN------LLVGDAKQSIYRFRNADRRLLTEVVSR------DFAETSERVNLP 463

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             ++RST +I+   + ++         +                    + + Q  +  +  
Sbjct: 464  YNWRSTPEIIEFNNSLYKHLPQILCEAMTREAETMAMPDPKLPEEINRTFMQTYADVEQL 523

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDILVLV 380
              P +              ++S  A         ++     F  G +KR     DI +LV
Sbjct: 524  VPPAKVDRHGSVCIYLPSPASSEEAEANLSWEEQILQDLPRFIIGLQKRGYAPSDIAILV 583

Query: 381  RKRKDTPLITFLT---RFLKNDYKISVV--GNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            RK      I       +   ++    ++   ++   L+   +I+ L  L +FI   + D 
Sbjct: 584  RKTYQAREIARAMLSYQPEPDEEDYPLIPMSDESLSLSGAASIRFLSNLLKFISRPQSDA 643

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                     L   +     ++  ++           +  N   ++               
Sbjct: 644  ---------LRQIAYLSYEELRKEKG------LAPTEEGNFSAAELAEFANLRRR----- 683

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554
               S ++              F S      +  L  +L+          + L   +    
Sbjct: 684  ---SLYELAE------GLVSFFHSYLPEREMPYLIAWLDLINDFGHERSADLHSFLQWWD 734

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IM 609
            E      + + + N   V +MT+H AKGL   VV +      +      + +        
Sbjct: 735  ETGHAKSRISSAPNSQAVTLMTIHKAKGLGFRVVLIPFLDWNLDDEAAHRHILWCKIDPA 794

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             S  +   +     + +    + +      +     +   LLYV  TRA D++ +     
Sbjct: 795  RSPFNILPVVPIRYKKEMAQTMFAADYFRERADILLDNLNLLYVATTRAKDEMHL---WL 851

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
              ++K  +  T  D+++ +  + +  K              A + +T HP +        
Sbjct: 852  HPSQKPESLSTVGDLIHLALASLDENKTESDMYCWGSPVISARQKTTDHPSSG------- 904

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                               +       L+        +         ++    G ++H++
Sbjct: 905  ------------------LSFTLPKGSLSAVADRLAIRPEGSEFYRRHKPLYHGHVMHRI 946

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
            L  I  +     +  +  Y +    +    E   L   ++ +  +  ++          V
Sbjct: 947  LADI--VLAKDIEPALERYVS--GGIVTRDEAIELADRLSVVTSDSRLSRWFDGSGR--V 1000

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY-E 908
                 I  P+ +     R D+I +   +  I +YK               H AQ+  Y  
Sbjct: 1001 LNEQDILLPEGEQR---RPDRIILYDDHTDIVDYKFGAV--------RKVHHAQMENYIR 1049

Query: 909  KILKDSYPNKSLVCLLIYVSEPKVF 933
             ++   YP  S+   L Y+   ++ 
Sbjct: 1050 LLVSMGYP--SVRGYLWYLPNNEIV 1072


>gi|303233117|ref|ZP_07319790.1| UvrD/REP helicase [Atopobium vaginae PB189-T1-4]
 gi|302480702|gb|EFL43789.1| UvrD/REP helicase [Atopobium vaginae PB189-T1-4]
          Length = 1349

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 116/676 (17%), Positives = 210/676 (31%), Gaps = 129/676 (19%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            + ++ + K+       +   Q       +     +M   T A +T+A+ +N+ Y   K+
Sbjct: 318 GLGSKSVPKEMKACMAAI---QTYTQTWTNTLLLRQMSPVTRACITIARQVNSRYAAYKR 374

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
             C+LD +D+II    LL        +  ++ +    +++DE QDT   Q  +I  L+  
Sbjct: 375 NACLLDNDDVIIEALRLLSTYPA---VAQELSRRFKLVMVDEFQDTDAAQLSLISRLS-- 429

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   ++   L  VGD +QSIY F GA+    +   +   +           ++L  
Sbjct: 430 --------NNGEHLATVGDAQQSIYKFRGADVSVFIGRGKQVDQTY--------HVKLDE 473

Query: 263 SFRSTADILTVVDKVFSI--PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV---VSQ 317
           +FRS   IL  V+ +F+      A      +  T    ++R      + L        + 
Sbjct: 474 NFRSHEAILAFVEAIFAPTCGGGAAATGAAAGITAGAGAARPIMKSFMPLHVTEHRHDAM 533

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
            D+                   S     A  +A  I     +               D+ 
Sbjct: 534 DDAALRGFPRIDVEVLHKTGNASYKGCTAAMVASRIKEYADSGHA----------YSDVA 583

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ-EDDLS 436
           +L+R      +     R L     I VV +          +  + AL R + +  +DD  
Sbjct: 584 LLMRAMTSASVYVDAMRSL----GIPVVVSGGSGFVTTTEVGIVAALLRVLANPAQDDRG 639

Query: 437 FVCMLKSPLFNFSEDDIFKI----------------------------CTQRHETETVYE 468
              +L S +F   ++D+  +                               R        
Sbjct: 640 LRTLLLSDMFGLDDNDMINLASMQCERACDAARDTSNAAQPATFISKRPAFRGLECMNES 699

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN----- 523
               F +    + Q     +    H     +P +    ++      ++   R        
Sbjct: 700 DSSIFGHAYSKRVQRAHDILIGARHALAAYTPSEVCLRVIEQSGWLERLCERGSEGQAII 759

Query: 524 ----EVIDVLDEF-----LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
                 I  +DE      L     +        +E          +     S   + VR+
Sbjct: 760 ANILAAIRYIDELCTTMGLGIARAS--------REFDLWRASARISPFTLASDKSDFVRV 811

Query: 575 MTVHTAKGLESPVVFLVDTGSQVF------------------SHKHIKKMHIMPSLNDDP 616
           MT+H++KGLE PVV L D                        +  +        S    P
Sbjct: 812 MTIHSSKGLEFPVVVLADWAPGRKHTPSLLFEKQDNTSTNTENSTNAPAQAQSQSQPPLP 871

Query: 617 GIPIWIPQSKSRNNI-----------------VSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            + +   +                        V  L+    +   EE  RLLYVG+TRA 
Sbjct: 872 RVLVMPKKRADMPGACEYDVSTPCDADTPSGNVQRLVHMEHERDAEEAARLLYVGLTRAR 931

Query: 660 DQLIICKHSNTSNEKK 675
           + L++C   + S +K 
Sbjct: 932 ECLVLCLSDHESKDKD 947



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 61/220 (27%), Gaps = 16/220 (7%)

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
               P +   +            K      +              +      K     +  
Sbjct: 1123 ASAPTDAFADSAADNATNKPAGKPGDMAAATPAAAPKPTPAAPAAPSAPTPKPARARVGD 1182

Query: 776  DNQTFNRGLIIHKLLQVIFT---LPEHKRKNFI-TSYCTKNAKLWPAKEYKNLLLSITRL 831
                 N G   H+L Q++      P   R   +   +        P+K    L  ++ R 
Sbjct: 1183 ATPATNFGSAFHQLAQLMIEENAYPSELRFAAVCRRW------SIPSKSAARLREALQRW 1236

Query: 832  LENPMMTTAMS-CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ--QNIFIFEYKTHHH 888
              + +   A+S     +E+           D+ I G  D ++         + +YKT   
Sbjct: 1237 YTSSIRKEALSYPSCAAELDFIYHYKTVYGDV-IEGAFDLLAYDDAAHKALLIDYKTG-D 1294

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
                 + +   H  Q  +Y  +L+      ++ C  + V 
Sbjct: 1295 ADLSYDEVYARHKRQAHVYYNVLRARGFT-TITCAFVCVE 1333


>gi|261840231|gb|ACX99996.1| ATP-dependent nuclease [Helicobacter pylori 52]
          Length = 949

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 133/866 (15%), Positives = 263/866 (30%), Gaps = 169/866 (19%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T  K        KK  D    L+   +E      R+          A       
Sbjct: 245 FLNSSLTWLKKKGEYRDFKKIKDEIPTLESECEEIENDLKRYYEA----RESALFKKFPK 300

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D  I HILIDE QDTSL
Sbjct: 301 FIQLYDKATSKIQALDFDAIKDKVHALLNGYEEMPAEFFYFRLDSRIVHILIDEFQDTSL 360

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY F G+                 +
Sbjct: 361 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYGFRGS-----------FSSLFES 409

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    LP + RS+  I+  V+ +F         +       +  S++  + G V++
Sbjct: 410 VSKDFYHDNLPFNHRSSPLIINYVNTIFKKAYQNSPTAYLEQKYPKASSNKHAKDGYVKV 469

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L ++I     N++             
Sbjct: 470 SLVA-------------------------DERELLLKQILQEAKNLLEH----------R 494

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I+ KDI +L     D   I    +   +  + S   + +        I            
Sbjct: 495 IEPKDITLLCATNDDALEIKNYLQENLSAIRPSTESSAKLSQFVESKIIKNALEYALAEE 554

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   +     + E+V  ++ K                  
Sbjct: 555 PYKPFYKHSVLK--LAGYLHDDAIALVGFNPKKESVAGFVWK------------------ 594

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                                    Q          D  +EFL      E+     +   
Sbjct: 595 -------------VMEWFELYGECAQICLELAVGCEDA-NEFL------EKLEAKEIASF 634

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +E                   +IMT+H +KG++ P V + +         +  +     
Sbjct: 635 KAE-----------------GTQIMTIHKSKGMQFPYVIVCE-RLGKPKSNNSNQFLEEY 676

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           S  +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 677 SGTELTRLYYRMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIV------ 730

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
                         V    +  +  K+ K      K +    E     P  +  E   + 
Sbjct: 731 --------------VAKDKNQKKDKKESKNKGMREKLDLAPLEEGEIAPVISSQEEPLSA 776

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
             ++      +++                   + + + +     +D +  N G+ +HK L
Sbjct: 777 SVVIKPHAYGEQVQ------------------EIEEEPSDYEKNNDQEAINFGIALHKGL 818

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EV 849
           +          K  +  Y   +   +   +Y+ L  S+     +  +       +   EV
Sbjct: 819 EY--QYAYRIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQALFKNLALRGEV 875

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           +         + ++   RID +   +   +++ +YK+  +          +H  Q+S Y 
Sbjct: 876 AF------LFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSHKVQVSHYT 920

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFI 934
             L+   P+  +   +IY +  ++  
Sbjct: 921 AFLQTQAPHFKIQAGIIY-AHKRLLE 945


>gi|57242577|ref|ZP_00370515.1| helicase, putative [Campylobacter upsaliensis RM3195]
 gi|57016862|gb|EAL53645.1| helicase, putative [Campylobacter upsaliensis RM3195]
          Length = 909

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 132/897 (14%), Positives = 286/897 (31%), Gaps = 182/897 (20%)

Query: 35  VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ-EINKKS 93
           ++++ +     +      L++   +   E+  +   S  L  K   +  II Q E  K  
Sbjct: 180 LNITNQPDLSKLQSAYDDLRKYCLSFDNEKLKNNFKSEKLHLKEFLKSPIIDQFEERKYL 239

Query: 94  PDLKEK---LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            DL ++       ++ F++   ++            + L K       +  K   +L F 
Sbjct: 240 QDLAQEDVNFTTKRERFLESLRQYALELENFKIANLMGLLKIFIEAKNDLHKNKNILSFS 299

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           D+     DL++  D+   I +++D  I+H+LIDE QDTS++Q+E+++ +  +   G+   
Sbjct: 300 DISRRVLDLIR-SDLKDMIYFRLDGRISHLLIDEFQDTSVVQYEILKPIIAELVSGEGVK 358

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              R+ F VGD+KQSIY F  ++ +     K            +     L  ++RS   +
Sbjct: 359 -KNRSFFYVGDKKQSIYRFRNSKKELFDLLKNTF--------TQIKTESLDTNYRSLGYL 409

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +  V+  F          +      +    +    G V++ +              +   
Sbjct: 410 IEFVNTQFKN--------KFENFIPQKILEQNQNKGFVRIVQSEEKDAKKTKQELLKVLK 461

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
              D L                               ++ +  + I +L  +  D   I 
Sbjct: 462 EQLDFL------------------------------HQKGVLYEKICILCWQNNDANEIL 491

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              +  K    I        +L +  +++ ++   ++                 +F    
Sbjct: 492 EYLKEHK----IPAFTQSNILLENKASVRLVLEYAKYC----------------IFG--- 528

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                                      +   +  + +  E + +    SP      ++  
Sbjct: 529 -----------------------DAFYLEVMREFLDFEPERLQLDLAKSPEQNMLYLIKN 565

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
            K     I+         L +FL +  +  + ++  L      L+               
Sbjct: 566 LKLDLADIA---------LLQFLEYAKQ--KGNFMELLFNPCPLKMIDEENY-------- 606

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IMTVH +KGLE   V ++D  S+   + + + +                    +R+ 
Sbjct: 607 GISIMTVHKSKGLEFDYVVVLDRLSK-GQNDNEQILLEYDIQKGWELRIKNAFHKAARDA 665

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
              + +  ++K+ +++    LYV +TRA + LI+                  +    S+ 
Sbjct: 666 SYQNFLARIEKAQKDDDINKLYVALTRAKNGLIVI----------KKNPFCVNGNNPSYF 715

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
           N +    ++       +E  A +      +N   E  +   Q +++ ++ ++        
Sbjct: 716 NGKGYLNLECCEIGTLNEQTAPKNEEQKEQNALKEFVKIPLQNVEKIELKEEFH------ 769

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                                           G   H  +Q +        ++       
Sbjct: 770 -------------------------------FGNAFHFCMQGLKLPNGENLEHIKQKAKD 798

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINCPKKDIIISGRID 869
           K        E+  L   +  LLEN      +       E  +S   N   K      R+D
Sbjct: 799 KFRHFLSEDEFNTLFKRVQNLLENKEFQALLQGKKLLKEQPLS--FNGELK------RLD 850

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            ++  ++   I +YKT     +  E        Q+++Y++ +K+    ++    LIY
Sbjct: 851 LLAFDEKEALIIDYKTGEFNAKNAE--------QITLYKQAIKEILNKQNTRAFLIY 899


>gi|76799128|ref|ZP_00781314.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
 gi|76585514|gb|EAO62086.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
          Length = 770

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 171/479 (35%), Gaps = 53/479 (11%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK----YLNAHYEEAKKKNCVLDFEDLIIN 155
            K+  +  + ++     +K    +L  L L +      +  Y + K +    +F D+   
Sbjct: 329 FKQLHNRIVGLKHLEVIFKYQGESLFLLELLQSFVLDFSEQYLQEKIQENAFEFSDIAHF 388

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              +L++      IR     + + +++DE QD +  Q  ++  L           S+   
Sbjct: 389 AIQILEENHD---IRQLYQDKYHEVMVDEYQDNNHTQERMLELL-----------SNGHN 434

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            F VGD KQSIY F  A+P+    + +  Q    +   +  +I L  +FRS +++L   +
Sbjct: 435 RFMVGDIKQSIYRFRQADPQIFNDKYKAYQ----DNPSQGKLIILKENFRSQSEVLDSTN 490

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            VF+   + +        + + ++    Q       +  V   D+  +   +S +  +D 
Sbjct: 491 SVFTHLMDEEVGDILYDESHQLKAGSPRQQERHPNNKTQVLLLDTDEDDIDDSDSQQYDI 550

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
            P E      A+ +A  I  +   +          +  +DI +LV  R            
Sbjct: 551 SPAE------AKLVAKEIIRLHKEE---------NVPFQDITLLVSSRT----RNDGILQ 591

Query: 396 LKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
             + Y I  V           + +  ++   R I +  +D + V +L+SP+F F+EDD+ 
Sbjct: 592 TFDRYGIPLVTDGGEQNYLKSVEVMVMLDTLRSIDNPLNDYALVALLRSPMFGFNEDDLT 651

Query: 455 KICTQRHETETVY----------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
           +I  Q  +    +           +         SK  H +K        A++ S +D  
Sbjct: 652 RIAIQDVKMAFYHKVKLSYHKEGHHSDLITPELSSKIDHFMKTFQTWRDFAKWHSLYDLI 711

Query: 505 TLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
             I   +       +     +    L        + E+  +  L   I  +++      
Sbjct: 712 WKIYNDRFYYDYVGALPKAEQRQANLYALALRANQFEKTGFKGLSRFIRMIDKVLENEN 770


>gi|163756939|ref|ZP_02164046.1| Superfamily I DNA and RNA helicase [Kordia algicida OT-1]
 gi|161323058|gb|EDP94400.1| Superfamily I DNA and RNA helicase [Kordia algicida OT-1]
          Length = 914

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 136/915 (14%), Positives = 274/915 (29%), Gaps = 166/915 (18%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKSTLA-- 125
           + F  QK++   +I  +    K  +         D +            ++  +      
Sbjct: 100 NIFKYQKYSILDDIKQKLFVDKYYNFIGMASVGMDRYKDTGRFLAIMALFREAELNEGVK 159

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                +     YEE   K+   DF  ++      LK        +  +   + ++++DE 
Sbjct: 160 LPEEWEEAVKSYEETLHKHSYFDFTMIMTEVIKNLKSN---KDFQDNVLGNLKYLVVDEY 216

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +Q  +I  L++          S   +  VGD+ Q++Y +  ++ K + + K    
Sbjct: 217 QDVNPVQENLIEELSK----------SNCNICVVGDDDQTLYEWRLSDVKYIQQFKERY- 265

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                  +  S I+L  +FRS+  I+    K  +          ++     H+  R G  
Sbjct: 266 -------KDVSYIKLEDNFRSSKGIIDAAIKCITNNTQRLPKIMNAKG---HQRFRDGD- 314

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFS 364
                                  +  Y D   +        + IA TI  + G +    +
Sbjct: 315 ---------------------IIYNQYEDVESEN-------QFIAETIQKLRGKEFQDRN 346

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
            G KR +   D  +L+R  K    I  +       + I  V +    L +   IK   A+
Sbjct: 347 GGAKRGLDYSDCAILLRTWKKATSIMEMLAA----HNIPFVVSGVNNLFERPEIKASKAI 402

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
            +++ +  ++ +     ++   N   +DI        + +   +      N         
Sbjct: 403 YQYLNNDIEEDTLKAYWEAVSENIKSEDIDAAIEAISKKKPNPKMYFSTFNIQEI----F 458

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
             +I +                +   K+      +     +   L  F           +
Sbjct: 459 WTFIEKAK----------LSEEVFADKEHEGIVGNDINEVIYYNLGMFSQIINDYASIHF 508

Query: 545 SS-----LQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                  L+  ++ L                    N V+IMTV+ +KGLE P+VF+    
Sbjct: 509 KDKPIWKLKGFLNFLRYSADGYYPEGWLNNSYKTPNAVQIMTVYQSKGLEFPIVFVPGLN 568

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE-YNRLLYV 653
                 K      I   +  +                   +    +    EE   RL YV
Sbjct: 569 KNYLPIKRPGGKQIWHFIEREW------------------IKDQHRLEVSEEAERRLFYV 610

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +TR+   L I +       +K +         D   +D+      L N           
Sbjct: 611 AITRSQKYLFITRSKENRLYQKESPFAKEVSNSDYIISDKNPDYSHLENL---------- 660

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                   TP  ++E     ++   +      P +  +   Y                S 
Sbjct: 661 --------TPTPKKEAGAIQLNFSVLKAFFDCPYRFKLISLY-------------GFVSP 699

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLP---EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
           +++      G  IH +L  +       E      I      +  +  A     +L +I +
Sbjct: 700 ITERMG--YGNSIHNVLMEMHRRHLNGEDVSNINIDELVENHVHIPYATNI--VLDNIKQ 755

Query: 831 LLENPMMTTA------MSCDSYSEVSVSGKINCPKKDIIISGRIDQ---ISISQQN-IFI 880
              N                 Y+E  +   +      I+++GR+D    I +       I
Sbjct: 756 TTNNVATAYLEENHKEFDNIEYAEQEIQIDL---GDGIMVNGRMDLIKKIDLDGNESTTI 812

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK----VFIIP 936
            ++K+     Q+ +        QLS+Y    K+     +    +  + E +       + 
Sbjct: 813 IDFKS-KKESQDQDITME----QLSMYALGYKELTGKTADRLQIFNLDEDRNSKHTQRLD 867

Query: 937 QNKLNKAFAEISTKI 951
            +K+++    I T  
Sbjct: 868 NSKIDEIKERIITSA 882


>gi|218681333|ref|ZP_03529230.1| ATP-dependent UvrD family DNA helicase [Rhizobium etli CIAT 894]
          Length = 299

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 143/305 (46%), Gaps = 16/305 (5%)

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA+D+L++C +              + M+  +  +D+       T S    EW   +W 
Sbjct: 1   TRAADRLVVCGYRGVR-----VHNDTWHMMISAALHDDHPHVETTTFSGPDGEWPGIKWR 55

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT---------KG 766
               E +  ER +  ++   E+ +P  L  P+      P  L+PS   T           
Sbjct: 56  VPRVERS-FERADRTRERDSEETLPDGLLRPLPPQAELPRPLSPSGAGTIIDEDDGGLLI 114

Query: 767 KTNLESLLSD-NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
            + L       +++  +G +IH++LQ +  +P  +R++  + Y  + A+ WP  E + L+
Sbjct: 115 ASPLFGEKERSDRSLEKGRLIHRMLQALPDIPPGERRDAASRYAERAARFWPDAERRKLV 174

Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
            S+ +LL+   +   +   +  EVS+ G +    +   +SGRID++++    + I +YKT
Sbjct: 175 DSVLKLLDERGLQAVLGTQAQPEVSIMGTLTLEGRRYAVSGRIDRLAVLADRVVILDYKT 234

Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
           +   P   E IP+ H AQL+IY +IL   YP K + C+L+Y     ++ + +  L  A A
Sbjct: 235 NRVPPATEEAIPFAHRAQLAIYREILAPLYPGKPIDCMLVYTENASLYTLSETVLGLALA 294

Query: 946 EISTK 950
            + TK
Sbjct: 295 AVKTK 299


>gi|314923609|gb|EFS87440.1| UvrD/REP helicase [Propionibacterium acnes HL001PA1]
          Length = 1061

 Score =  204 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 110/955 (11%), Positives = 266/955 (27%), Gaps = 109/955 (11%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMAARLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ + +        S          S+  G
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSSRLRRRANHSTSTDAG 323

Query: 304 ------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                      +L  ++             +W S            ++A  +A       
Sbjct: 324 TVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAE----- 378

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                    +     +    V          +   +    +   ++ + ++     D   
Sbjct: 379 --GIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNPLAGIDRSV 436

Query: 418 IKDLMALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-N 475
           I  L    R +   + D +    +   P    +          R E  +  E        
Sbjct: 437 IHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAELDTACEVY 496

Query: 476 CGISKFQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNE 524
                 + + + +  +    Q          + H+    +            R     + 
Sbjct: 497 SVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRRRAVAGDST 556

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVH 578
               LD   +     E     +       L      EQ P    R    + + V ++T H
Sbjct: 557 ANRDLDGLCSLFDMAESAQTMAGITGGQRLIEVVRQEQIPADRARESDEDRDGVSVVTAH 616

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             KG E  VV +       +   +     +        G+      S             
Sbjct: 617 RIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVATPGWS------------- 663

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                     RLL V  +RA  QL+ C   +    ++ S        + D+  +      
Sbjct: 664 ---ENLRAETRLLLVACSRARHQLLSCSVDSAEEGKRPSGLVAGLPHIEDNADSLNFTSL 720

Query: 698 IKLTNSI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKND 750
            +L   +     ++ E            +     E   ++L+ +           P + D
Sbjct: 721 TELVGELRQVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQAD 780

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKL-LQVIFTLPEHKR 801
           +     L+ S +           ++             + G ++H++  + +      + 
Sbjct: 781 MAGEIELSASHVGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAENMDQWSLPEA 840

Query: 802 KNFITSY---CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
              + +       +A+   + E  +   ++ R   +  +         +EV V G I  P
Sbjct: 841 LAELEAAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVP 898

Query: 859 KKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 899 SGTARVRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|50842800|ref|YP_056027.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           KPA171202]
 gi|50840402|gb|AAT83069.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           KPA171202]
 gi|315105904|gb|EFT77880.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1]
          Length = 1061

 Score =  204 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 112/955 (11%), Positives = 264/955 (27%), Gaps = 109/955 (11%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMAARLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ + +        S          S+  G
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSSRLRRRANHSTSTDAG 323

Query: 304 ------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                      +L  ++             +W S            ++A  +A       
Sbjct: 324 TVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAE----- 378

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                    +     +    V          +   +    +   ++ + ++     D   
Sbjct: 379 --GIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNPLAGIDRSV 436

Query: 418 IKDLMALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-N 475
           I  L    R +   + D +    +   P    +          R E  +  E        
Sbjct: 437 IHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAELDTVCEVY 496

Query: 476 CGISKFQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNE 524
                 + + + +  +    Q          + H+    +           SR     + 
Sbjct: 497 SVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDST 556

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVH 578
               LD   +     E     +       L      EQ P    R    + + V ++T H
Sbjct: 557 ANRDLDGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAH 616

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             KG E  VV +       +   +     +        G+      S             
Sbjct: 617 RIKGREFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS------------- 663

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                     RLL V  +RA  QL++C   +    ++ S        + D+  +      
Sbjct: 664 ---ENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSL 720

Query: 698 IKLTNSI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKND 750
            +L   +     ++ E            +     E   ++L+ +           P + D
Sbjct: 721 TELVGELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQAD 780

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPE 798
           +     L+ S I           ++     +         G ++H++    +        
Sbjct: 781 MAGEIELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEA 840

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
                        +A+   + E  +   ++ R   +  +         +EV V G I  P
Sbjct: 841 LAELEAAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVP 898

Query: 859 KKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 899 SGTARVRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|315092776|gb|EFT64752.1| UvrD/REP helicase [Propionibacterium acnes HL060PA1]
          Length = 1058

 Score =  204 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 110/955 (11%), Positives = 267/955 (27%), Gaps = 109/955 (11%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 48  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 107

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 108 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMAARLRQEGCDPQDLTEAGTASGVPE-- 165

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 166 ---WRVLGPFLADYLDVLDLEGSLDYAESVHRARIALTRPGTDVEVR----SRIKLLICD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 219 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ + +        S          S+  G
Sbjct: 269 FP--------DVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSSRLRRRANHSTSTDAG 320

Query: 304 ------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                      +L  ++             +W S            ++A  +A       
Sbjct: 321 TVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAE----- 375

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                    +     +    V          +   +    +   ++ + ++     D   
Sbjct: 376 --GIPVLRSRDEHALSDIYAVTHILNALEMAVALASGAQLSSRDVATLLSNPLAGIDRSV 433

Query: 418 IKDLMALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-N 475
           I  L    R +   + D +    +   P    +          R E  +  E        
Sbjct: 434 IHRLETWCRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSEDASTAELDTACEVY 493

Query: 476 CGISKFQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNE 524
                 + + + +  +    Q          + H+    +            R     + 
Sbjct: 494 SVPPGLRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWASSLRRRAVAGDST 553

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVH 578
               LD   +     E     +       L      EQ P    R    + + V ++T H
Sbjct: 554 ANRDLDGLCSLFDMAESAQTMAGITGGQRLIEVVRQEQIPADRARESDEDRDGVSVVTAH 613

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             KG E  VV +       +   +     +        G+      S             
Sbjct: 614 RIKGREFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS------------- 660

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                     RLL V  +RA  QL++C   +    ++ S        + D+  +      
Sbjct: 661 ---ENLRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLNFTSL 717

Query: 698 IKLTNSI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKND 750
            +L   +     ++ E            +     E   ++L+ +           P + D
Sbjct: 718 TELVGELRQVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQAD 777

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL-LQVIFTLPEHKR 801
           +     L+ S +           ++     +         G ++H++  + +      + 
Sbjct: 778 MAGEIELSASHVGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAENMDQWSLPEA 837

Query: 802 KNFITSY---CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
              + +       +A+   + E  +   ++ R   +  +         +EV V G I  P
Sbjct: 838 LAELEAAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVP 895

Query: 859 KKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 896 SGTARVRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 947


>gi|212550653|ref|YP_002308970.1| exodeoxyribonuclease V beta subunit [Candidatus Azobacteroides
            pseudotrichonymphae genomovar. CFP2]
 gi|212548891|dbj|BAG83559.1| exodeoxyribonuclease V beta subunit [Candidatus Azobacteroides
            pseudotrichonymphae genomovar. CFP2]
          Length = 1038

 Score =  204 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 139/874 (15%), Positives = 272/874 (31%), Gaps = 143/874 (16%)

Query: 77   KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
                      ++    +   + KL  + +  ++   +  T +M K  L  L L   +   
Sbjct: 284  DKDAWTTKNHKKKEDIAKLAEYKLIPTLNCILEALRKTRTAQMIKDNLYQLGLIGKVIKE 343

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
             EE   +        ++ +TN  L        + +I  KI  +I H++IDE QDTS +QW
Sbjct: 344  IEEQNHEQNRF----MLSDTNIFLHQMIDDTDAPFIYEKIGVQIKHVMIDEFQDTSQLQW 399

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            E  R L  +                VGDEKQSIY +   + K   R  +           
Sbjct: 400  ENFRVLLNEILA------QNTFSLIVGDEKQSIYRWRNGDWKIFKRAVKELGT------- 446

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                  L  ++RS   I+   +  F +  N    +  S   +     +  +    +    
Sbjct: 447  --EEKPLLYNWRSEKHIIDFNNSFFPLAANMLKNAVFSIYEVEKVKQKTKKSSEKEGHIF 504

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
            +    D++ + Q                  ++   +   +  +              I A
Sbjct: 505  IQFIKDNKEDVQYVD--------------QMMKEAVLEQLKKLYNNG----------IPA 540

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKIS---------VVGNDRFILTDHLAIKDLMAL 424
            KDI +LVRK+K   ++      L+               +V N+ F L   LA++ ++A 
Sbjct: 541  KDICLLVRKKKTINILAAFF--LEKRNNYPKMAEKHYLTIVSNEAFSLKSSLAVRIIIAS 598

Query: 425  GRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             R I  Q++++ +    +    +      D+                             
Sbjct: 599  LRIISRQDNEIYYKNQLIYLLKIGGLDVQDL----------------------------- 629

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                    +I         +    I    +     + +   +    L  F ++  +  + 
Sbjct: 630  --------IIDSLLSMPLFELIGYICKQFE-----LEQLPGQA-AYLFVFYDYLSQYLKE 675

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            S +++   +   E+               ++ MT+H +KGL+   V +     +    K+
Sbjct: 676  SPATIHHFLEHWEKEGQDKTVPTGMGVEGIKAMTIHKSKGLQFHTVIIPYCDWKFSPEKN 735

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                   P    D        + + +    +   +     +  +   LLYV  TRA   L
Sbjct: 736  PFLWCKSPKNIKDLPFFPITYKKEMKYTDFATEYEEETIRSYVDNLNLLYVAFTRAECNL 795

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            II        +K    +   D++  S          +  +    + ++  E         
Sbjct: 796  II---LTRYKKKIKEIKRVSDLLQLSVKKLNGNWDEENCHFRMGEIFLLKE--------- 843

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
              E++      + +  + K++     N   E      S    +  T  +        F  
Sbjct: 844  --EKKVATDNPLKKIPLMKEIKFSPVNFQQEKITFKQSNQFQQLMTGKDM------YFTY 895

Query: 783  GLIIHKLL-Q--VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
              IIH  L Q   +  + +      I S    N            +  I R ++   +  
Sbjct: 896  DNIIHYFLIQINYLEDIEKKVNDGIIQSLIQPNEGRI-------YIEKIRRSIQLSGVED 948

Query: 840  AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
                +S  +V     I   +  I+I+ R D+  I+     I +YK         E    +
Sbjct: 949  WF--NSRYKVYRKYSIIAEENGIVINKRPDRFLIAGNKTIIIDYK--------FETPHSS 998

Query: 900  HIAQLSIYE-KILKDSYPNKSLVCLLIYVSEPKV 932
            H  QL  Y   ++     + ++   L YV   +V
Sbjct: 999  HEKQLRQYANLLVTRKTSHFNMEMYLWYVEMNQV 1032


>gi|313673705|ref|YP_004051816.1| uvrd/rep helicase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940461|gb|ADR19653.1| UvrD/REP helicase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 1029

 Score =  204 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 136/838 (16%), Positives = 270/838 (32%), Gaps = 129/838 (15%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            N I ++     P+ ++  ++   E +K    +   K  K + A     + L     + +K
Sbjct: 288  NEILKKGGTIPPEEQKLFREILKEILKNFRYYLLLKYTKESEAIFKQIEKLKEKENDVQK 347

Query: 143  KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            +  ++D   +     ++LK      +    + ++I H LIDE QDTS  Q+E IR L E+
Sbjct: 348  RLNIVDGSQITKRITEILKSDSGVPYAFCNLGEQIMHYLIDEFQDTSRDQFEAIRPLLEN 407

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                  +  S  ++F VGD+KQSIY + G +                        I L  
Sbjct: 408  ------SKGSGGSIFIVGDKKQSIYGWRGGDYTLFDEVDNDF---------ALESITLKG 452

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            ++RS  DI+   +  F+        +  +      +   I +  + ++ +          
Sbjct: 453  NYRSGKDIVNFNNICFA-------KALLNDIPELIKKYDISENLSEEIKKVYSDASQIPV 505

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
               +     +      E +      R+   +  +           KR     DI++LVR 
Sbjct: 506  QDFKGYINIHLKKRNDEDTDDFYKNRLIRILETL----------FKRGANYSDIMILVRN 555

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              D   +            I  + +    + ++  IK ++    FI+  ED      +  
Sbjct: 556  NNDIETVVDWIHSKDQFKNIPFITDGNLKIINNFNIKKILLASSFIIDPEDTFYIKSV-- 613

Query: 443  SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                                                 +   ++   ++L       SP++
Sbjct: 614  -------------------------------------EELGLLNCFNDLNIYPSGYSPYE 636

Query: 503  FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
            FF  ++   K                L  FL    +       +++E+I    +      
Sbjct: 637  FFLSVIDLLKIENDL----------YLKRFLEEVAQL-TLKGKNIREIIEYFYENQDISI 685

Query: 563  RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI----KKMHIMPSLNDDPGI 618
             +     + +RIM++H +KGL+S +V L     +++    +        ++     +  I
Sbjct: 686  SSSDEA-DAIRIMSIHKSKGLQSEIVILPIFDWELYKTDRMYDYIPLSDVLEDYAGEEKI 744

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKS 676
               I   K  +    ++ +   KS   E   L+YV  TRA  +L I      N S     
Sbjct: 745  FTTINSLKDISETAKNIYEKKIKSQLIEGLNLMYVAQTRAVRELYITGMFSKNLSGSYPR 804

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA--YEWSTHHPENTPLEREETIKQLM 734
              R+   +     + ++      +  +I K+E              +   E+ E IK   
Sbjct: 805  PLRSSAILYEMLDNLEKYEDGSGIDYAIEKNEMGIFFVCGELKDFGSKSFEKNEDIKVNK 864

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
                                  +  S ID     +L            G  IHKLL VI 
Sbjct: 865  CYSPDSIIF------------RIRKSFIDEPDIEDLRE------GMKLGTDIHKLLSVIR 906

Query: 795  TLPEHK-RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
             + + K  +  +     ++  L+     K +   +   + +  +                
Sbjct: 907  KIDDEKNIEAEVERAFKRSQILYD----KKMFEMVINTVRD--LKDYFIDIDDC--WTEK 958

Query: 854  KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            +      +I    R+D+I       +I +YKT     ++          Q+ IY +++
Sbjct: 959  EFVTKSGNIF---RVDRIVKKGSFFYIIDYKTGDPKEED--------RKQVDIYRRLI 1005


>gi|158521184|ref|YP_001529054.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
 gi|158510010|gb|ABW66977.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3]
          Length = 1132

 Score =  204 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 97/719 (13%), Positives = 196/719 (27%), Gaps = 128/719 (17%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE------RFSLLSSF 72
             +  + +   +       L+   G  T L    T          E+              
Sbjct: 519  AVLAITFTNRAAREMADRLAAMLGGNTDLPFVSTFHGFCLGLLREQGGFDAVVLDEYDRR 578

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
             L +    +      +       L + +  ++     +    +   + + T     L   
Sbjct: 579  ILAKTVLKRAAAGKADGLPGPDRLLDMIASAKQAM--LGPGDDLSGVARETAP--DLLAT 634

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            L   Y+    +N   D+EDLI    DLL+       +R    Q   +I +DE QD +  Q
Sbjct: 635  LYGDYQALLAENSGCDYEDLICRAVDLLEGH---KDVRQTAQQRFVYIFVDEYQDVNHAQ 691

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + +I++L            +   +  +GD  Q+IY F GA        +           
Sbjct: 692  YRLIQALA----------PAGGNICVIGDPDQAIYGFRGASAAYFQTFETDYP------- 734

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +   L  ++RST  I++    V                     + +    G V+++ 
Sbjct: 735  -GAARFFLEKNYRSTQTIVSAAYHVI--------------------TGQDDDPGRVRVYS 773

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV-- 370
             +                    ++ + +S    A     TI  M+G     S    +   
Sbjct: 774  DIAG--------------VPVVTVARLASERAEAVFAGRTIERMVGGLGFHSVDFGKAGY 819

Query: 371  -----IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                 +   D  VL R R+ T +   +         I      +  +     + + ++L 
Sbjct: 820  EAPAGLGFADFAVLCRTRRQTEVFADVLES----AGIPCHVVSKQRIYAARGVGEAISLL 875

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS------ 479
            R    Q   +         L+  +      + +   +   +       A           
Sbjct: 876  RLAEGQATFIDLEKA-GGVLYGATAAKKQAVISAWAKERNLPAAEVLAATERFPVPGLSQ 934

Query: 480  ----KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                +     + + EL               ++   +     ++              + 
Sbjct: 935  AAQRRLAGAARTVAELKARTGHLPVAGRLRFLIENMEPLATLVNGSKKNREA-----FDA 989

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             +   + + +                  A     + VR+MT+H AKGLE  VVF+     
Sbjct: 990  AVEAARPAGTDATAFFD--TVALAADADAVMPGVDRVRLMTLHAAKGLEFAVVFVAGCEE 1047

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             +                                          + +  +E  RL YV M
Sbjct: 1048 DLVPFSGYGD----------------------------------RATDIDEERRLFYVAM 1073

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            TRA ++L +    N +   K    T    V D   + +   +++              +
Sbjct: 1074 TRAKERLFLTWAKNRTLYGKRKACTLSRFVADIEGDLKEQAEVETGRPPKDGHVQMELF 1132


>gi|34541655|ref|NP_906134.1| UvrD/REP helicase domain-containing protein [Porphyromonas gingivalis
            W83]
 gi|34397973|gb|AAQ67033.1| UvrD/REP helicase domain protein [Porphyromonas gingivalis W83]
          Length = 1102

 Score =  204 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 125/865 (14%), Positives = 261/865 (30%), Gaps = 110/865 (12%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS--LTLAKYLNAHYEEAKKKN 144
              I        ++           R+        +S      L +   L    E  +++ 
Sbjct: 300  AAILSAYQSGLKECLTEMATLYLGREWQEYSTAKQSLPFLNRLGIISDLWRQIEGIRQEE 359

Query: 145  CVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
              +    LI +   LL        + ++  KI   I H +IDE QDTS +Q+E  + L  
Sbjct: 360  NKM----LISDAPSLLHRIIDGSETPFVYDKIGVRIEHEMIDEFQDTSRLQYENFKPLLS 415

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            +       +        VGD KQSIY F  A+ + +            +  +    + LP
Sbjct: 416  ESLAHGKYN------LLVGDAKQSIYRFRNADRRLLTEVVSR------DFAETSERVNLP 463

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             ++RST +I+   + ++         +                    + + Q  +  +  
Sbjct: 464  YNWRSTPEIIEFNNSLYKHLPQILCEAMTREAETMAMPDPKLPEEINRTFMQTYADVEQL 523

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG-KKRVIQAKDILVLV 380
              P +              ++S  A         ++     F  G +KR     DI +LV
Sbjct: 524  VPPAKVDRHGSVCIYLPSPASSEEAEANLSWEEQILQDLPRFIIGLQKRGYAPSDIAILV 583

Query: 381  RKRKDTPLITFLT---RFLKNDYKISVV--GNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            RK      I       +   ++    ++   ++   L+   +I+ L  L +FI   + D 
Sbjct: 584  RKTYQAREIARAMLSYQPEPDEEDYPLIPMSDESLSLSGAASIRFLSNLLKFISRPQSDA 643

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                     L   +     ++  ++           +  N   ++               
Sbjct: 644  ---------LRQIAYLSYEELRKEKG------LAPTEEGNFSAAELAEFANLRRR----- 683

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554
               S ++              F S      +  L  +L+          + L   +    
Sbjct: 684  ---SLYELAE------GLVSFFHSYLPEREMPYLIAWLDLINDFGHERSADLHSFLQWWD 734

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IM 609
            E      + + + N   V +MT+H AKGL   VV +      +      + +        
Sbjct: 735  ETGHAKSRISSAPNSQAVTLMTIHKAKGLGFRVVLIPFLDWNLDDEAAHRHILWCKIDPA 794

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             S  +   +     + +    + +      +     +   LLYV  TRA D++ +     
Sbjct: 795  RSPFNILPVVPIRYKKEMAQTMFATDYFRERADILLDNLNLLYVATTRAKDEMHL---WL 851

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
              ++K  +  T  D+++ +  + +  K              A + +T HP +        
Sbjct: 852  HPSQKPESLSTVGDLIHLALASLDENKTESDMYCWGSPVISARQKTTDHPSSG------- 904

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                                       L+        +         ++    G ++H++
Sbjct: 905  ------------------LPFTLPKGSLSAVADRLAIRPEGSEFYRRHKPLYHGHVMHRI 946

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
            L  I  +     +  +  Y +    +    E   L+  ++ +  +  ++          V
Sbjct: 947  LADI--VLAKDIEPALERYVS--GGIVTRDEAIELVDRLSVVTSDSRLSRWFDGSGR--V 1000

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY-E 908
                 I  P+ +     R D+I +   +  I +YK               H AQ+  Y  
Sbjct: 1001 LNEQDILLPEGEQR---RPDRIILYDDHTDIVDYKFGAV--------RKVHHAQMENYIR 1049

Query: 909  KILKDSYPNKSLVCLLIYVSEPKVF 933
             ++   YP  S+   L Y+   ++ 
Sbjct: 1050 LLVSMGYP--SVRGYLWYLPNNEIV 1072


>gi|254252756|ref|ZP_04946074.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Burkholderia
            dolosa AUO158]
 gi|124895365|gb|EAY69245.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Burkholderia
            dolosa AUO158]
          Length = 1238

 Score =  204 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 120/977 (12%), Positives = 247/977 (25%), Gaps = 121/977 (12%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
             LW +    +  + +     +   +         L   S      +  + L    L    
Sbjct: 240  RLWAVERDAIDALLRAAQPVLNQRSHKPDAVVDALAAWSAHFAQGDAAAALPKAALKLTR 299

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            T       +          +                    +        T  + L     
Sbjct: 300  TALAKATKKGGATPEHPFFDVADALDAAVAAAEAAQRARWLALVAEWLDTAPRALAER-- 357

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              K+   V+ F+DL+ N    L       W+   +       LIDE QDT  +Q+ +   
Sbjct: 358  --KRTRRVVSFDDLLANLYHALHAHP---WLADTLRARYPAALIDEFQDTDPLQFAIFDR 412

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            +                LF VGD KQ+IYSF  A+    L   R  ++     GQ     
Sbjct: 413  IFA----------PGGPLFLVGDPKQAIYSFRAADLHTYLGRARTRKRVLYARGQSAFD- 461

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
                  R     L V         +            R    R        +        
Sbjct: 462  --ARDRRRVQSFLHVESACVRARRSRLLPGAGRHARTRAVRRRHRSRCGRAISGSGTLPG 519

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                  ++++      +   E +              M G            +   D+ V
Sbjct: 520  GEHTLLKRDAHAQAAQACAAEIARL------------MRGARDGHVRLGDTPLSPGDVAV 567

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            LV+  +   L+  +       + I  V   +  +      + L  +   I +  D     
Sbjct: 568  LVQTHRQGSLVKRVLAT----WGIGSVELAQASVFSTADAEQLERVLAAIDAPGDLRRLR 623

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
              L S  F      ++++     + +     +    +      +   +Y           
Sbjct: 624  AALASDWFGLDARALWRMEQGEGDAQRDDAAVSDGTDAMSW-VERFSRYRLLWRERGFAV 682

Query: 499  SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-ELEQY 557
                F   +  A++             I+ L E        +     +L+ L +  L+  
Sbjct: 683  MWRTFTRELRIAERLMAGADGERRVTDINHLAELTQARASAQPGIAPTLRWLAAQRLDGG 742

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                +    ++ N V+I+TVH +KGLE  VVF                +      +DD G
Sbjct: 743  GEEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGGLREPPASALPDAREYHDDAG 802

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKK 675
              +        +   +   +   +    E  RL+YV +TRA  +  +    + ++ + ++
Sbjct: 803  DAVLHYGC--DDEAAAHAARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSSRSTRE 860

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
            + +     +V  +  + +               W A           P+           
Sbjct: 861  ARRSVLNWLVAGAGLSFDAWLDKPPDEGTLDTAWHALAGGAISVAPLPVPARRERLAAGH 920

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTID-------------------------------- 763
            +           +   +   + + S++                                 
Sbjct: 921  DASQTLAARHATRVLRDAWRMASFSSLTSSMAREEAGVAAVPDDDLRPDHDALAVLAMTG 980

Query: 764  -------TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
                      +   + +LS  +    G  +H+L ++              +         
Sbjct: 981  ELAVPDTAAAEPPDDDILSFPRGAAAGECLHRLFELSRFTEPGSWHQAALAALHDRPVEA 1040

Query: 817  PAKEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSV---------------- 851
                   L   + RL+++           +          E+                  
Sbjct: 1041 DPDLAARLPAMMVRLVDDVVHTELVPGMRLADLDPAKRLDEMGFLFPAPSLDLAALRRLL 1100

Query: 852  ------SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH---------HVPQEIEHI 896
                     +        I G ID I       +I ++K++H              +   
Sbjct: 1101 VAHGYPDVALEAGTLAGFIKGFIDMIVEHDGRFWIVDWKSNHLGNTPDAYGPRALSVAMA 1160

Query: 897  PYTHIAQLSIYEKILKD 913
             + +  Q  +Y   L  
Sbjct: 1161 DHAYHLQALLYTVALHR 1177


>gi|225016991|ref|ZP_03706183.1| hypothetical protein CLOSTMETH_00912 [Clostridium methylpentosum DSM
            5476]
 gi|224950257|gb|EEG31466.1| hypothetical protein CLOSTMETH_00912 [Clostridium methylpentosum DSM
            5476]
          Length = 1075

 Score =  204 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 114/680 (16%), Positives = 202/680 (29%), Gaps = 134/680 (19%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G    ++       L        ++I      +   G      +A+   +A++       
Sbjct: 488  GTGKTKTLVSRIAYLVEHKGIDPAEITAVTFTNKAAGEMRQRLQAELGNRAAKLT--IGT 545

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            F  +    LT+     +      +  +   L    +  Q   +K+  R    ++ K    
Sbjct: 546  FHSICLNLLTESGDEVR------LADEEETLALAQEVLQQRELKLTPRTFVQEVSKRKNG 599

Query: 126  SLT-LAKYLNAHYEEAK-KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L       Y     ++   LDF+DL++    L ++ D         ++  +H+L+D
Sbjct: 600  LPDSLDDGAYEEYCARLDQEAGALDFDDLLLRVLTLWEQGDKHPR-----NRRFSHLLVD 654

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QD + IQ  ++R+ +              +LF +GD  QSIY F G++ +   R +  
Sbjct: 655  EFQDINGIQHRLVRAWSGQ----------GESLFVIGDPDQSIYGFRGSDARCFDRLREE 704

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                          I L  ++RST +IL     V           E              
Sbjct: 705  --------RADLREIRLVRNYRSTPEILRCALPVIGNNPGPDRTLEAQREP--------- 747

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                V+L        +                             IA  I+ M+G   + 
Sbjct: 748  -GSPVELVTAESDLSEG--------------------------IFIAKEINRMVGGIDML 780

Query: 364  SN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G+ R     DI +L R  +   ++    R       I  V + R       A+
Sbjct: 781  DAQNRLPGESRTRDFSDIALLYRTHRQAAMLEKCLRTE----GIPYVVSGRDDFLQDSAV 836

Query: 419  KDLMALGRFILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYEYIQKFA-N 475
            +  +   RF+L   D  S    L+          D I +     +E + +    +  +  
Sbjct: 837  RGTVGFFRFLLDPADSHSMRSCLRLIWDCPQERCDQICEFWESLNEGDFLQRVDRLVSGV 896

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
              I      ++   +L  I    SP +                     + +  +  F   
Sbjct: 897  GPIDCLTEWVRIAQQLFPIVNTNSPAELIEQWAALAG----LSESDPVKRLANMAAF--- 949

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAH---SANHNEVRIMTVHTAKGLESPVVFLVD 592
                    +  L   +  L                    V +MT+H AKGLE PVVFL  
Sbjct: 950  --------HPDLPSFVQALLLGQEADLMRSSGKDYTSGAVSLMTMHGAKGLEFPVVFLCG 1001

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                   H+                                      + +  +E  RL Y
Sbjct: 1002 VRKGCIPHETAG-----------------------------------RTADIQEERRLFY 1026

Query: 653  VGMTRASDQLIICKHSNTSN 672
            VGMTRA ++L++    + S 
Sbjct: 1027 VGMTRAKEELLLLTSKDPSP 1046


>gi|254388945|ref|ZP_05004176.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702663|gb|EDY48475.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 1162

 Score =  204 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 120/826 (14%), Positives = 230/826 (27%), Gaps = 127/826 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLS 70
                +     L       I    +  +          AQ L+ A          FS L 
Sbjct: 72  RISTYHAFAGQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLV 131

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              L       ++++  E+     +      +  +            +      A+    
Sbjct: 132 GDLLALDAELSEHLVRPELLAAHDE------ELLETLASASLTNADLRRLPEAAAARREL 185

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           + L   Y  AK+   +LDF D I  + +L L +  V   +R +       +L+DE QDTS
Sbjct: 186 RGLVLRYRAAKRSRELLDFGDQIALSAELALTRPAVGTLLRDE----YRVVLLDEYQDTS 241

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q  ++  L            +   + AVGD  Q+IY + GA    +         R  
Sbjct: 242 VAQRLLLSGLFG--------QGTGHAVTAVGDPCQAIYGWRGASVANLDDFPIHFPYR-- 291

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
             G   +   L  + RS   +L + + + +     + + E          +       V 
Sbjct: 292 -DGTPAARYSLSENRRSGGRLLQLANGLAAPL---RAMHEGVEALRPAPGAERDGSVRVA 347

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L      + D                             +A +I+ ++  D         
Sbjct: 348 LLPTHAEEID----------------------------WLADSIARLVRADKA------- 372

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                +I VL R   D P I            I V       L     + DL+A+   + 
Sbjct: 373 ---PGEIAVLCRTATDFPEIQAALVA----RDIPVEVVGLSGLLHLPEVADLVAVCEVLQ 425

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------------------------- 461
               + S V +L  P +     D+  +  +                              
Sbjct: 426 DPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVHRDSGHDDGAGLAERLAAAVEGTDP 485

Query: 462 -------------ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                              +    F+     +F H+ + + EL   +      D    +L
Sbjct: 486 AEVISLADGFDAFIDPAGADDGLPFSGEARVRFAHLARELRELR-RSLADPLMDVLHRVL 544

Query: 509 GAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI--- 561
                  +  +          + L  FL+        +  +SL   +  L          
Sbjct: 545 STTGLDVELSASPRALAARRRETLGNFLDIAAGFAALDGEASLLAFLGFLRTAAQYEKGL 604

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDP 616
             A     N V+++T H +KGLE  VV +    +  F     ++       ++P      
Sbjct: 605 DNALPGGENTVKVLTAHKSKGLEWDVVAVPGLTAGSFPSDRAREAWTAHPQVLPHALRGD 664

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
              +    +     +     + LK+    E  RL YV  TR    L+   H     +K+ 
Sbjct: 665 AATLPELPAPDAKGL-KAFKEELKEHQHTEELRLGYVTFTRPRSLLLGSAHWWGPAQKRP 723

Query: 677 NQRTWY--DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              + +   +          ++      + + +               PL+     ++  
Sbjct: 724 RGPSAFLEALYEHCVAGFGEIEVWADEPAADAENPQQTPGGPDEVWPLPLDPASLRRRRA 783

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
               +   L  P+  +   P   + ST        L +    + + 
Sbjct: 784 ARDTVLAYLEEPV--EPVGPVRSDGSTATPAAPVPLSADALGDTSA 827



 Score = 98.5 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/273 (8%), Positives = 58/273 (21%), Gaps = 32/273 (11%)

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                 +     +                  +   +     ++L   +    ++  P    
Sbjct: 894  GHTGPQATGPADGGPDGPEPLTPEELRAIASWDRDLTALAQELRGARASVHEVPLPPALT 953

Query: 751  INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ-VIFTLPEHKRKNFITSYC 809
             ++   L         +              RG   H  ++     LP            
Sbjct: 954  ASQLMRLAADPDGFARELARPMPRPPQPAARRGTRFHAWVESRFEELPLPLLGP-----D 1008

Query: 810  TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISG 866
                      +  ++        +   +  A         +   V           ++ G
Sbjct: 1009 ELPGGDLDGPDLADIADEE----DLAALKEAFERTPYARRTPHRVESPFQITLAGRVVRG 1064

Query: 867  RIDQISIS---------QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
            RID +  +              I ++KT      +          QL++Y     + +  
Sbjct: 1065 RIDAVYRTTAADGPATSPARYEIVDWKTGAAAAADP--------LQLAVYRLAWAEQHGL 1116

Query: 918  KS--LVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
                +    ++V   +V              + 
Sbjct: 1117 DPEEVDAAFVFVRSGEVVRPQSLPGRAELERVL 1149


>gi|295108272|emb|CBL22225.1| Superfamily I DNA and RNA helicases [Ruminococcus obeum A2-162]
          Length = 591

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 88/559 (15%), Positives = 173/559 (30%), Gaps = 119/559 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + + + Y +  +    LDF+D+++   +L  +      I      +  +IL+DE QD
Sbjct: 140 EVFRQIYSGYCQTCQARRKLDFDDMLLYCYELFVQ---RKDILAAWQNKFQYILVDEFQD 196

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q++++R L +              LF VGD+ QSIY F GA P+ +L   +   K 
Sbjct: 197 INQLQYDIVRMLAK----------PQDNLFIVGDDDQSIYHFRGARPEIMLNFTKDYPK- 245

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L +++R +  IL+   ++    +     +                   
Sbjct: 246 -------AETVTLDVNYRCSGRILSSALRLIGSNKKRFQKN------------------- 279

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                      +       E      + L            +   +   +          
Sbjct: 280 -----LSTPNQEGCEVTISEYQNPREEYLS-----------VVARLRGRMEQGDDL---- 319

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGR 426
                 KD  +L+R  ++             + ++     ++   L  H   ++L+A  R
Sbjct: 320 ------KDTALLLRTNQEA----EGLVGALMERQVPFYMKEKLPNLFHHWICRNLLAYMR 369

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
           F        +F+  +  P    + D +          + + E  +             + 
Sbjct: 370 FANGDRSRKNFLEFMNRPNRYIARDALSLSPEI--SFDQLKECYKDKDWMC-----DRLT 422

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQF--ISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            +   + I +  +P+     I       +     + +     + L E L+          
Sbjct: 423 TLETHLRILKGLAPYAAINFIRKGMGYEEYLREYAEYRKIKPEELSEILDRLTE-STKGM 481

Query: 545 SSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            SL+E    +E   Q      R        V I T+H  KGLE   V++++         
Sbjct: 482 DSLKEWEDYIEDYTQKLEEQARKQEKEREGVLISTLHGVKGLEYDRVYILNVNEGSMP-- 539

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                              K + +   EE  RL YVGMTRA  +
Sbjct: 540 ---------------------------------YKKAVLEPAIEEERRLFYVGMTRARKE 566

Query: 662 LIICKHSNTSNEKKSNQRT 680
           L +C       +K+   R 
Sbjct: 567 LTLCYVRQQYEKKREPSRF 585


>gi|308270800|emb|CBX27410.1| hypothetical protein N47_H22320 [uncultured Desulfobacterium sp.]
          Length = 657

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/556 (16%), Positives = 179/556 (32%), Gaps = 119/556 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + + + ++  Y   K  +  LD++DL+I    L++     A ++ +I     HI++DE Q
Sbjct: 183 IEMIEMIHKEYARRKILHSYLDYDDLLIRFKTLMEDN---ADLKDRISSAYEHIMVDEYQ 239

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ IQ E++  LT           + + +  VGD+ QSIY+F GA+ K ++   ++   
Sbjct: 240 DTNKIQSEIVCLLTG----------TNKNIMVVGDDSQSIYAFRGADFKNIMEFPKLFP- 288

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     II L  ++RS   IL + + +             +      +        
Sbjct: 289 -------GTRIIALEENYRSDQPILDLTNVIIERASEKYSKILFTKRKGGAKPL------ 335

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                        L + S+ +  +  I   I+ ++         
Sbjct: 336 -----------------------------LVKTSTENGQSMFIVEKINKLVQN------- 359

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   +I VL R    +  +            I       F   +   IKD++A  +
Sbjct: 360 ---NVPLSEIAVLFRAGYYSFDLEIEL----ARNGIPFKKVGGFKFVESAHIKDILAHMK 412

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--RHETETVYEYIQKFANCGISKFQHV 484
            I++ +D LS+  +L   +        + I     +  +        K  N    K + +
Sbjct: 413 VIVNPKDRLSWQRILL-LIDKIGPKTAYNIFGAILKENSGYSGLLTAKIQNSVSDKLEEL 471

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            K   ++       S +D    I        +       +    ++  +    R      
Sbjct: 472 KKLFGKI--DPDAMSVYDMGKEIAEYYLPVLRQRFDDYPKREKDIEHLILIMERY----- 524

Query: 545 SSLQELISELEQYPPTIKR-----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +SL E +S++   PP          +S   N + + T+H+AKGLE   VF++      F 
Sbjct: 525 NSLVEFLSDMTLEPPNAAINNTLAENSGADNCLVLSTIHSAKGLEWHTVFIIWALDGRFP 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             +                                              RL+YV  TRA 
Sbjct: 585 SMYSINNPEELEEEL----------------------------------RLMYVAATRAK 610

Query: 660 DQLIICKHSNTSNEKK 675
             L     +   +   
Sbjct: 611 KNLYFTYPNRFYDRSS 626


>gi|257054746|ref|YP_003132578.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
 gi|256584618|gb|ACU95751.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
          Length = 1066

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 123/1011 (12%), Positives = 285/1011 (28%), Gaps = 167/1011 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMET------GNPTILKKAQTL---QQASQ 58
           + +     I + L      +  ++       + T          +      L   +  S 
Sbjct: 68  AADALRADITRRLTGHRGERAGEVRTVREPIVRTVHSYAFAVLRLQAVRDGLPVPRLLSG 127

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
            +       LL+           + +     +   + +L++ L ++ +    +       
Sbjct: 128 PEQDVVVRELLAGDLERGAPDWPEPLRPALAVPGFAEELRDLLLRAAER--GLGPEDLIK 185

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNC------------VLDFEDLIINTNDLLKKRDV 165
              +        A      YEE                   LD  +L+ +    L+    
Sbjct: 186 LGHRQGRDEWVAAGRFWRQYEEVTLLQGVGGHAVGESGAPALDAAELVASALVELEGDPE 245

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +       + H+ +D+ Q    +Q+ ++R L E          +       GD  QS
Sbjct: 246 ---LLAGEQARVRHLFVDDAQHLDPLQYRLVRLLAE----------TASDAVLAGDPDQS 292

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           ++SF GA+P+                      + L  S R    +   V ++ +      
Sbjct: 293 VFSFRGADPRLFAD----------ADPDGDRTVVLTRSHRLDPVVHEAVGRIAATLPGTS 342

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                  T  R      G+ G  ++  ++     ++                        
Sbjct: 343 AHRASVPTPTR------GREGRGKVRTRLSPTPAAE------------------------ 372

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
               A  I++ +    +        +    + VL+R    +  +    +       I V 
Sbjct: 373 ----AAWIADQLRRAHLLD-----GVPWSQMAVLMRSVSRSLPV---LQRALTMAGIPVA 420

Query: 406 GN-DRFILTDHLAIKDLMALGRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICT---- 458
              +   L    A++ L+ +          D  +   +L SPL       + ++      
Sbjct: 421 AVTEELPLARQPAVRPLLTVLWAAADPRVLDAETAEMLLSSPLGGADPLALRRLRRGLRR 480

Query: 459 -------QRHETETVYEYIQK------FANCGISKFQHVIKYIHELIH-IAQFCSPHDFF 504
                  +R   E + E ++        A+   +  + V + +      +       D  
Sbjct: 481 LELVAGGERSSDELLVEALRDGDVLAGLADAEAAPVRRVSRLLTVAREAMRSGAGVEDVL 540

Query: 505 TLILGAKKGRQQFISR------FGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISEL 554
             +  A   + + +++       G      LD      +   R  ++   + +   +  L
Sbjct: 541 WQVWQASGLQDRLVAQAAKGGTLGMRADRDLDAVVALFDAARRYVDRLPKAGVLGFVEYL 600

Query: 555 --EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
             +          +   + V ++T H A G E  VV ++     ++    ++   +    
Sbjct: 601 SSQHIAGDSLAPVAVRGSGVSLLTAHGAVGREWSVVAILGLQEGMWPDLRLRGSVL---- 656

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                  + +      + +              E  RL YV  +RA   L++        
Sbjct: 657 --GVERLVDLLSGVDDDAV---ATVSATAPLLAEERRLFYVAASRARHTLLVSAVQGEDE 711

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKI--KLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
           +         D   D+        ++  +       +       +    E  P  R+   
Sbjct: 712 QPSRFFFDLVDAGVDTERGGGPDVRLVARERGLTLAELVGELRAAVTDTELEPRRRKLAA 771

Query: 731 KQLM-------------DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
           +QL                  +          + +E   ++PS +DT  K  L  LL  +
Sbjct: 772 RQLARLARDGVPGAHPEQWYGLAGNSSDRPLREPDEVIRVSPSVVDTLVKCPLRWLLERH 831

Query: 778 QT-------FNRGLIIHKLLQVIFTLPEHK--RKNFITSY--CTKNAKLWPAKEYKNLLL 826
                       G ++H L Q      + +   K    ++      A  +  KE   +  
Sbjct: 832 GGTDPAQLSAVTGTLVHALAQAAAEGTDEQTLWKELDEAWAKVDAGAPWFSRKERVRVEG 891

Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD--IIISGRIDQISIS-QQNIFIFEY 883
            +   L     +         E  +   +   + +  + ++GR+D++ +  +    + + 
Sbjct: 892 MVRSFLTWLRQSRDELTQHAVEQDMRVSLPEAEGEPSVALTGRVDRLELDAEGRPVVIDL 951

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKI-LKDSYPNKSLV---CLLIYVSEP 930
           KT       +         QL++Y+   L  ++           L+YV +P
Sbjct: 952 KTSKSP---VAKDAAAEHPQLAVYQLATLLGAFSGHKGHTGGARLLYVGKP 999


>gi|291460938|ref|ZP_06600245.1| DNA helicase II [Fusobacterium periodonticum ATCC 33693]
 gi|291379949|gb|EFE87467.1| DNA helicase II [Fusobacterium periodonticum ATCC 33693]
          Length = 724

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 120/798 (15%), Positives = 249/798 (31%), Gaps = 160/798 (20%)

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
               KI+ +  +I++DE QD++ IQ +++  +++          + + +  VGDE QSIY
Sbjct: 24  EFLEKINDDFEYIMVDEYQDSNKIQEKILLLISK----------TKKNICVVGDEDQSIY 73

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA  + +L   +   +       +  II L  ++RS ADI+   +K  +  +     
Sbjct: 74  RFRGASSENILNFPKHFDED------ECKIIILEENYRSVADIVEFNNKWITSID----- 122

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                  W+    + +      ++        +  ++    +  
Sbjct: 123 -----------------------WQANRFEKNIVSMRDKDILGKNVFHISGKTMDENIKN 159

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            + + I  +            ++     I VL    K+                I V   
Sbjct: 160 TVIF-IKKL--------KQNNKITNYNQIAVLFSNFKNNS--AKKLEVALKKENIEVYSP 208

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
              +  D   + ++      IL+          +   L    +    +I         + 
Sbjct: 209 RTKVFFD---MYEIKLTLGLILACFKKYFPEDSIDEYLTGCIDFARLEIKKDSEFLTWIK 265

Query: 468 EYIQKFANCGISKFQH-VIKYIH--ELIHIAQFCSPHD--------FFTLILGAKKGRQQ 516
           E I+  +            ++++     +I +  SP D          + I  +    Q+
Sbjct: 266 EKIENISEENFDSLNEIFYEFLNFTYYKNIIKEESPIDSRANHNLAILSKIFKSF---QK 322

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
           ++        D      +            L+      +     I       +  +  +T
Sbjct: 323 YVHYKKITAEDD----FSVVKYFFTGYLDILR------DSRVDEIFSEEDYPNECIPFLT 372

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE PVV +    S+  +++                      Q+     I S   
Sbjct: 373 IHQSKGLEFPVVIVFSLNSKPNNYEDN----------------DISRQTSIDRLINSSSK 416

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                  + ++ R  YV  +RA + L++  +    +E   N + ++  V         + 
Sbjct: 417 LSENDKEKFDFYRKFYVAFSRAKNLLVLSSYEMGVSE---NFKPFFYSVRGVNSLQFDIN 473

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
           ++ L     KDE     ++T                      I      P++  +     
Sbjct: 474 EVNLDEVSKKDERKILSYTT---------------------DIAPYRHCPMRYYLVREK- 511

Query: 757 LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---------FTLPEHKRKNFITS 807
                         E      +T N G+I HK ++ I           L +   +N + +
Sbjct: 512 --------------EYATFSKKTLNLGIITHKAIEHINKLFLQKKNPILDDEYIENLLKN 557

Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGR 867
                        ++ ++  + + +E              E S   +I     D I+ G+
Sbjct: 558 IYKFQNIDLDDN-FERIISIVKKYIEEE--KDNFEYIKKVEAS-EFRIE---DDYILYGQ 610

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           ID I   +  I I ++KT  +           +  QLS+Y+ +L+  Y +K +   L Y+
Sbjct: 611 IDLILEDENEIQIIDFKTGKY---NEIEYSSNYRQQLSLYKLLLQKKY-DKDIKTYLYYL 666

Query: 928 SE---PKVFIIPQNKLNK 942
            E    K   I    L +
Sbjct: 667 EEDEPKKEIFITDEDLEE 684


>gi|92119222|ref|YP_578951.1| UvrD/REP helicase [Nitrobacter hamburgensis X14]
 gi|91802116|gb|ABE64491.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis
           X14]
          Length = 689

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 112/675 (16%), Positives = 199/675 (29%), Gaps = 129/675 (19%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I + +       ++D   +       G   +   +    L       
Sbjct: 70  RRAASEMTRRVERIARKVMGDNAGVLTDALTWSGTFHGIGARLLRDYSDQIGLDPQFTIH 129

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++     + F+  +    T+        +  +   ++    ++      +  
Sbjct: 130 DREDSADLMNLIRHEKGFSKTESRFPTKGT---CLSIYSRCVNAETAIEQVLGASYPWCS 186

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             +T       K L A Y EAK+K  VLD++DL++     +    ++  I        +H
Sbjct: 187 GWATE-----LKELFAAYVEAKQKQNVLDYDDLLLYWAQTMSDPALADDI----GGRFDH 237

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++ +L                L  VGD+ QSIYSF  A  + +L 
Sbjct: 238 VLVDEYQDTNRLQSSILLAL----------KPGGHGLTVVGDDAQSIYSFRAATVRNILD 287

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                           S+I L  ++RST  IL   + V  + +     +  +      R 
Sbjct: 288 FPTQFS-------PPASVITLDRNYRSTQTILAAANGVIDLAKERFTKNLWTERASGSRP 340

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                               L      +  AR I   I     +
Sbjct: 341 -----------------------------------QLVTVRDEADQARFIVERILENRES 365

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T+           K+  VL R    +  +            I  V        D   IK
Sbjct: 366 GTLL----------KEQAVLFRTSSHSGPLEVEL----TRRNIPFVKFGGLKFLDAAHIK 411

Query: 420 DLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           D++AL RFI +  D ++   +L   P    +                             
Sbjct: 412 DMLALLRFIENPRDRVAGFRLLHLLPGVGPASAQRVLDHMAEAADPIAALSSILAPPRAG 471

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             ++  I+ + EL        P D     L  +    +            L +       
Sbjct: 472 DDWKAFIQAVGELR---YSEWPSDLERARLWYEPHLDRI-HEDAETRRADLIQLEQIASG 527

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
                    ++ ++EL   PP      +     + + + + T+H+AKG E   VF+++  
Sbjct: 528 YSSR-----EKFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWKSVFVLNVV 582

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                    +     +  EE  RLLYV 
Sbjct: 583 DGCIPSD----------------------------------LGAGTSAEIEEERRLLYVS 608

Query: 655 MTRASDQLIICKHSN 669
           MTRA D L +     
Sbjct: 609 MTRAKDDLHLVVPQR 623


>gi|254168521|ref|ZP_04875365.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469]
 gi|197622576|gb|EDY35147.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469]
          Length = 927

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 133/879 (15%), Positives = 276/879 (31%), Gaps = 165/879 (18%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
           N+  +  + K     E +    DE I +       K+ +           +   YEEA  
Sbjct: 152 NLNGKNYSDKCKRFVEAVNVIYDELIDLE------KVKEKNPEFY----DVLEKYEEALD 201

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               L F  LI    + +K+             +I+H+++DE QD +  Q E+I+ +   
Sbjct: 202 SYHRLTFGRLIYLAVNKIKEEPEKLP-------KISHLIVDEYQDINHAQEELIKLI--- 251

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +  VGD +Q+IY + G++        +  ++  T+       I +P 
Sbjct: 252 --------GKNANIMVVGDPRQTIYQWRGSD-------DQCFERFVTDLYPDAENIVIPE 296

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           + RS  +I+TV + V    EN +           H  S   + G V +        +   
Sbjct: 297 NRRSGKNIVTVGNTVADKFENRK---------FEHMISIKERNGYVYVILPETPDDE--- 344

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                                  AR IA  I  ++           + ++  D  +L+R 
Sbjct: 345 -----------------------ARWIANQIQKLVNE---------KGLKYSDFGILLRS 372

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV---- 438
              +         +     I  +      L        +  L  ++       ++     
Sbjct: 373 VGTS---GDPFIKVFKGMGIPYIVGGTIGLFRREEAMAVGKLFNWLYDGGFFKNYRGKVT 429

Query: 439 ---CMLKSPLFNFSEDD-IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
               ++ S L ++     + +   +      + ++     +     FQ     +  ++  
Sbjct: 430 EYDELVDSALDDWISATGLLEGEDRNDLKAKLLKWKMDVYSGTYPNFQDAYHALLNILDF 489

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            +    +     I+         +  +     +         L   +++ + L   I+  
Sbjct: 490 KKLDPENKIHAAIMANLGRFSNLLGDY-----ENALRLGGNKLTWNKSNLNGLMWYINLY 544

Query: 555 EQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                           + V+I T+H AKGLE  VVF+    S+ F   H+          
Sbjct: 545 ATTAYEEQLSEDIRGIDAVQITTIHQAKGLEWSVVFIPSLVSRRFPSSHV---------- 594

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                  W+   +       DL         ++  RLLYV +TRA   L++      +N+
Sbjct: 595 --GEHKEWLISRELFPASRYDL-------QMDDERRLLYVAVTRAKSTLVLSAFRRITNK 645

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K +      ++              +   ++ +     +   +  +           ++
Sbjct: 646 VKISPFLEEILIECPKIIKAISANSDVILDVDYEGTSGEDNDIYTFD---------AGEI 696

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
           +D  K P         +   P                   L++      G  +H  L+  
Sbjct: 697 VDYTKCPYFYRLRHIWNYEAP-------------------LAEELG--YGKALHYCLRRA 735

Query: 794 FTL------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
             +      P       +           P+ + + +     R+L   +       +S +
Sbjct: 736 VEIHKNGLNPFSAILTAVKK--DFYLPYAPSHKAEKMKEGAQRMLLEYVANNLNDIESVA 793

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           EV    ++  P+K+  I+G++D I    +N+ + EYKT   V +     P+    Q+ +Y
Sbjct: 794 EV--EYRLEFPQKNSTITGKVDVIIDRGENVEVREYKTSTKVTK-----PHHVALQVHLY 846

Query: 908 EKILKDSYPNKSL-VCLLIYVSEPKVFIIPQNKLNKAFA 945
              LK       +    ++Y+SE ++  I  +    A A
Sbjct: 847 ALGLKGL--GYKVGKGSVVYLSESRIDPI--DVSEDALA 881


>gi|317125678|ref|YP_004099790.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
 gi|315589766|gb|ADU49063.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
          Length = 1186

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 147/1099 (13%), Positives = 278/1099 (25%), Gaps = 207/1099 (18%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKA-QTLQQASQTQCI 62
            R G+             W L    VS  +  +    +  +  I        + A   +  
Sbjct: 144  RLGIEPEFRVLT-EAGAWQLAAEAVSRWDGPMDGVTKAESTVIEAVMSLAGEMAEHVRAP 202

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
             E    L       +  P              D +  L  +++    +R+R         
Sbjct: 203  TEVTDHLDEVIAALELLP------------DGDGRGTLIPAKEMLGVLRERRAIL----- 245

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                      +   +   K++   LDF D +     +         +     +    +L+
Sbjct: 246  ---------PIVQAFVALKRERESLDFADQVALAARVA---GSVPAVGAIERERFRAVLL 293

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKN---------------------THSSPRTLFAVGD 221
            DE QDTS  Q  ++RSL  D     +                        +P  L AVGD
Sbjct: 294  DEFQDTSEAQLALLRSLFHDASDASDASDASDASDASDASDASDPSHAPDAPVALTAVGD 353

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
              QSIY + GA    +LR          +      ++ L  S+R+   IL   +      
Sbjct: 354  PNQSIYGWRGASATTLLR----FPAEFADRHGPADVLPLSTSWRNDELILAAAN------ 403

Query: 282  ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES--WTSYFDSLPQE 339
                     +      R       GT+ +  +  +Q +++      +  W S        
Sbjct: 404  --VTAAPLATAHVQPLRPRPGAGAGTISIARRETAQQEAEHVATWIAARWRSPSGRRTGR 461

Query: 340  SSASILARR-----IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            S+A +  RR     +   +        +   G          LV +      P       
Sbjct: 462  SAAVLCRRRSSFPLVMEALREAGLPVEVVGLGGLLSTPEVSDLVALLWVVQDPTRGDQLM 521

Query: 395  FLKNDYKISVVGNDRFILTDH----------------------LAIKDLMALGRFILSQE 432
             L     + +   D                                +D    G F     
Sbjct: 522  RLLTGPVVRLGAADLDAFWAWAKELHSRPWRPGHAGSAAQGVLPIERDGHDAGPFSGRPG 581

Query: 433  DDLSFVCMLKSPLFNFSED---------DIFKICTQRHETETVYEYIQKFANCGISKFQH 483
             DL    +  S     + D          + +   +            + ++    + Q 
Sbjct: 582  HDLPDDSVRTSDDSVRTSDLAADSADGATLVEALDELPPAGWRGFRGSQLSDEARRRLQS 641

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRNE 540
            +   +  L  +       D       A     + +SR  +        LD F +   R  
Sbjct: 642  LADVVRRLRGLT-ALPLVDMVAEAETAVGLDIEVLSRPEHTASTARVHLDAFADVAARYA 700

Query: 541  -QNSYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
              +   +L   ++ LE      +        ++ + V+++TVH AKGLE  VV +     
Sbjct: 701  MSSDRPTLAGFLAWLEAAREQERGLDAGTVESDSDAVQVLTVHAAKGLEWDVVAVPGLVE 760

Query: 596  QVFSHKHI-----------------------------------KKMHIMPSLNDDPGIPI 620
              F                                                  D  G+P 
Sbjct: 761  GAFPDHSSTSVAPLDPVGEAADADTPVEYGCSGTPKDKGWLIGLDSLPYDLRGDRDGLPR 820

Query: 621  WIPQSKSRNNIVSDLIKHLKKS----TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
               ++ +    +   I+            E  RL YV +TRA   L++  H     +K  
Sbjct: 821  LDWRACTDRKALGAAIEAFALEGGRHAIAEERRLAYVAVTRARTDLLLSTHLWGVGKKTL 880

Query: 677  NQRTWYDM----------------------VYDSFHNDERVKKIKLTNSINKDE------ 708
            +  + + +                      + +          +    S +         
Sbjct: 881  SVPSRFLLDIKSGFAGTVSVEHWHPAPAPVIKNGKATAPANPHLTEPISASWPHDPLRHR 940

Query: 709  ------WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                        +        L R+     L              +  +N P  L+ S +
Sbjct: 941  RELLGTVPERLRALAAVGPPDLSRDARADDLRLLLAERALRGVRDEPVVNVPRHLSASEV 1000

Query: 763  DTKGKTN--------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                +                      +G   H  ++  F+     R   +  +    + 
Sbjct: 1001 VAFARDPEAFALRLRRPMPEPPAVAARQGTAFHAWVEEHFS-----RAAIVDLWDLPGSA 1055

Query: 815  LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-I 873
               A    +L       L +                +   I      I + GRID +   
Sbjct: 1056 DEEAGSDGDLDRMRANFLASEW-------ADRVPEEIELAIETMVDGIAVRGRIDAVFPR 1108

Query: 874  SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
                  + ++KT          +    +A  ++    L+ + P   +     Y SE    
Sbjct: 1109 DDGGWTVVDWKTGARPSGREAEVRALQLAAYALAFARLRGADPAL-VDAAFYYASEGVTV 1167

Query: 934  IIPQNKLNKAFAEISTKIP 952
              P      A   + + IP
Sbjct: 1168 R-PNVPDQAALTAMLSTIP 1185


>gi|330444029|ref|YP_004377015.1| exodeoxyribonuclease V subunit beta [Chlamydophila pecorum E58]
 gi|328807139|gb|AEB41312.1| exodeoxyribonuclease V, beta subunit [Chlamydophila pecorum E58]
          Length = 936

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 141/895 (15%), Positives = 265/895 (29%), Gaps = 165/895 (18%)

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           +E  S+      +   +P+    T+     +   +EK +  +       D        K 
Sbjct: 151 DEDLSVFVDLLYSPLPSPKLFSFTK----LAQTFQEKHRLMRYRPCAALDLLQNASWQKH 206

Query: 123 TLASLT---LAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           T A      +   L    +   K++    +  ++ I+    LL   + +  I   + +  
Sbjct: 207 TEAFCNVDLIFNTLLYDIQNYLKRHYTPWISPDESIVVLEKLLSSPE-AQRIVSSLRERY 265

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             +LIDE QDT   QW +   L           +   +LF +GD KQSIY +  A+    
Sbjct: 266 QLVLIDEFQDTDKKQWNIFSLLFA-------HENFSGSLFLIGDPKQSIYEWRNADLPTY 318

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L+ K    K         S + L  ++RST  ++  ++ +F        +S         
Sbjct: 319 LKAKSSFPKH--------SQLYLLNNYRSTPKLMHAINHLFQKISPFLEISGYP------ 364

Query: 298 RSSRIGQVGTVQLWEQVVSQ-HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                     ++    +    H+   +     +  Y D + Q       A  I+      
Sbjct: 365 ---------PIEYSPLIPKALHEFSSSHAPIHFFPYEDRVSQ-------ALWISSE---- 404

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                     K   I   ++ +LV                     + V  + +  +    
Sbjct: 405 -----ALHLQKHHQIPLGNMAILVSDSSQAFDF-------ITHCSLPVSFSKKKSVLHLT 452

Query: 417 AIKDLM-ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
               L  A+   +L  E+      +L S LF  S   I    +Q  E  T Y    +   
Sbjct: 453 ETYLLTLAMLEALLFPENYERISRVLLSSLFGLSASQI----SQEKERFTTYFLSLRSHL 508

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                                     D     +         +S    + +  L  F + 
Sbjct: 509 FQHGLLATFYFLCSTQGETLLSTPQGDLIFQEMEKLCSYLDSLSSHPYQQLLHLQ-FFSE 567

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           T R E+    SL                    + N ++I T+H++KGLE  VVF +   +
Sbjct: 568 TGRWEEELALSLHA-----------------QDPNTLKITTIHSSKGLEYDVVFCIGLDT 610

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              +                                              E  R +YV  
Sbjct: 611 HKKNKSPS------------------------------------------ESLREMYVAC 628

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA  QL I        ++ S+  + Y     S+   E +    +        + +   S
Sbjct: 629 TRAKKQLYIPLSL---QKQHSSALSHYLQAVGSYATLEELVTHLIQEQPELFSYSSEAPS 685

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                   L  E     L   +KI       + +  + P  L+ S   +K    L     
Sbjct: 686 FSPLNFDFLPPETFSLSLPSPKKIYSFSSVKLLDSQDPPESLHSSITLSKTHLPL----- 740

Query: 776 DNQTFNRGLIIHKLLQ---VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                  GL++HK+L+   ++      + ++ I                + LL ++    
Sbjct: 741 ---GKKTGLLMHKILEEALLMPHSDLSRIRSIIYPLVQNTHLEGYEPMIEQLLTTVFSFP 797

Query: 833 -----ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
                +   +        + EVS        +++ +  G ID     Q + +I ++KT  
Sbjct: 798 LTFSSQTFTLEEISKNHMFKEVSFL----FSQEEELWQGVIDLFFKHQDHYYIIDWKTSF 853

Query: 888 HVPQEIEHIPYTHIA--Q-----LSIY------EKILKDSYPNKSLVCLLIYVSE 929
                 ++ P    A  Q     L  Y      +K L+    + ++    +++  
Sbjct: 854 LGENTSDYTPERLRAYIQKEKLDLQGYIYIDAAQKFLRQFDIHHNVEMGFVFLRG 908


>gi|225573671|ref|ZP_03782426.1| hypothetical protein RUMHYD_01867 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038964|gb|EEG49210.1| hypothetical protein RUMHYD_01867 [Blautia hydrogenotrophica DSM
           10507]
          Length = 608

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/608 (15%), Positives = 200/608 (32%), Gaps = 127/608 (20%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-------TLAKYLNAHYEEAK 141
           + +      E+L++  +   ++    +  K  +  L           + + +   Y++  
Sbjct: 112 LGELVEQYGEELRQEGEFLEELGREISMVKGNRVELEYYYSKNCPDEIFRKIYLGYQKKC 171

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +   +LDF+D+++NT +LL++      IR    +   +IL+DE QD + +Q++VIR L E
Sbjct: 172 RALRLLDFDDMLLNTWELLRE---RTDIRRAWQERFPYILVDEFQDINPVQYDVIRLLAE 228

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                       + LF VGD+ QSIY F GA P+ ++  ++               + L 
Sbjct: 229 ----------PRKNLFIVGDDDQSIYHFRGARPQIMMNFEKDYP--------GTQKVLLN 270

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
           +++R T +IL    ++    +N               S+   +   VQ+ +    +  S 
Sbjct: 271 VNYRCTEEILNSAMRMIKHNKNRFPK---------KLSTPNEKGCPVQICQLEQPRQQSL 321

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                                      +   +   +                 D  VL R
Sbjct: 322 --------------------------FVLKDLQKFVEAGGSLE----------DAAVLFR 345

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCM 440
              +   +  +         +     +R   L +H   ++L+              F+ +
Sbjct: 346 TNLEAENMVNVLMEF----HLPFTMKERLPDLYEHWICRNLLDYMEMAQGDMSRKRFLAV 401

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           +  P    S + +++   +R   E++  Y ++            I  + E + + +   P
Sbjct: 402 MNRPNRYISREAVYE---KRVSLESLRMYYEEKEWMC-----DRIDLLEEQLKLLRQMKP 453

Query: 501 HDFFTLILGAKKGRQQF--ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
           +     I       +     + +     + L E L+           SL++    +E Y 
Sbjct: 454 YAAVNFIRHGIGYEEYLRDYAAYRKIKSEELFELLDRIQE-STKGMDSLEQWKEHMEDYG 512

Query: 559 ---PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                     S     V I T+H+ KGLE   V++++       +K       +      
Sbjct: 513 NKLKEQAARQSQKSEGVTISTLHSVKGLEYERVYILNVNEGSIPYKKAVLEEQLEEERRL 572

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                               YVGMTRA  +L +C  ++   +++
Sbjct: 573 -----------------------------------FYVGMTRARKKLFLCYVTHQFEKER 597

Query: 676 SNQRTWYD 683
              R   +
Sbjct: 598 ERSRFLEE 605


>gi|315080857|gb|EFT52833.1| UvrD/REP helicase [Propionibacterium acnes HL078PA1]
          Length = 1061

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 110/950 (11%), Positives = 261/950 (27%), Gaps = 99/950 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVVSPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 322

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 323 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 381

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ + ++     D   I  L 
Sbjct: 382 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLE 441

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 442 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 501

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 502 LRALAQPLAVMTQRVQRAADLLRSGATCHETLWALWQGSSWAASLRSRAVAGDSTANRDL 561

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 562 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 621

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 622 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 665

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  + A  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 666 LRAETRLLLVACSLARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 725

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 726 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 785

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 786 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 845

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 846 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 903

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 904 VRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|150377933|ref|YP_001314528.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
 gi|150032480|gb|ABR64595.1| UvrD/REP helicase [Sinorhizobium medicae WSM419]
          Length = 689

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 118/741 (15%), Positives = 208/741 (28%), Gaps = 144/741 (19%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--------Q 54
            R    +    + I + +       + D   +       G   +   A+ +         
Sbjct: 70  RRAAYEMTRRVKSICRQVLGNQAAAIGDALTWAGTFHGIGARLLRIYAEQIGVNVDFTIH 129

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ---EINKKSPDLKEKLKKSQDEFIKIR 111
                  +         F  T+   P KN        +      + E LK S        
Sbjct: 130 DREDAADLMNLIRHELGFSRTESRFPTKNTCLAIYSRVVNSESSISEVLKSSYPWVSAWE 189

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           ++                   L A Y E+K+   VLD++DL++    ++    ++  +  
Sbjct: 190 EQLKQ----------------LFAGYVESKQAQNVLDYDDLLLYWAQMVSDPGLAEDV-- 231

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                 +HIL+DE QDT+ +Q  ++ SL            + R L  VGD+ QSIYSF  
Sbjct: 232 --GTRFDHILVDEYQDTNRLQSSILLSL----------KPAGRGLTVVGDDAQSIYSFRA 279

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L   +              +I L  ++RST  IL   + V  +       +  +
Sbjct: 280 ATIRNILDFPKAFS------PAPADVITLERNYRSTQPILAAANGVIDLARERFTKNLWT 333

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                 R                                     L      +  A  I  
Sbjct: 334 DRQSEQRP-----------------------------------RLVSVKDEADQANYIVE 358

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +                 +  K   VL R    +  +            I  V      
Sbjct: 359 QVLGNRDLG----------VPLKQQAVLFRSSNHSGALEVEL----TRRNIPFVKFGGLK 404

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEY 469
             D   +KDL+A+ RF  +  D ++   +L+  L         KI               
Sbjct: 405 FLDAAHVKDLLAVLRFAQNPRDRVAGFRLLQ-MLPGVGPQTAGKILDTIAADPEPLFSLT 463

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                      +   +  +  L   A    P +  +     +    +     G    D+L
Sbjct: 464 EIPSPPKTGDHWTEFVTLLSTLRK-AGVGWPEEIASARAWYEPHLDRIHEDAGTRKADLL 522

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLES 585
                  L    + Y + +  ++EL   PP      +     + + + + T+H+AKG E 
Sbjct: 523 Q------LEQIASGYPNRERFLTELTLDPPDATSDQAGVPLLDEDYLVLSTIHSAKGQEW 576

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+++                                           +     +  E
Sbjct: 577 RSVFMLNVVDGCIPSD----------------------------------LAAGTTAELE 602

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RLLYVGMTRA D L +          ++     +     +      + +   T S  
Sbjct: 603 EERRLLYVGMTRARDSLDLLTPQRFFTGGQNALGDRHVYASRTRFIPATLLQFFETTSWP 662

Query: 706 KDEWIAYEWSTHHPENTPLER 726
           K    A + S          R
Sbjct: 663 KVTANAGDRSARQIRVDVGAR 683


>gi|118443754|ref|YP_877708.1| superfamily I DNA helicase [Clostridium novyi NT]
 gi|118134210|gb|ABK61254.1| superfamily I DNA helicase (rep-like helicase) [Clostridium novyi
           NT]
          Length = 727

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 90/560 (16%), Positives = 181/560 (32%), Gaps = 110/560 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       YE+ K +N ++DF+DL +   D+  K            +   ++LIDE QD
Sbjct: 214 DIFSECYRAYEDFKLRNNLMDFDDLQLRCRDMFIKN---LRTLNGYRKLFKYMLIDEFQD 270

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
              IQ E+++ L ED            ++FAVGDE Q IY F G++P+ ++   +     
Sbjct: 271 CDGIQIEILKLLNED-----------NSIFAVGDEDQCIYGFRGSKPECMVNFHKYF--- 316

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +    + L  ++R    I+   D +    +     +            +  +   
Sbjct: 317 -----KDGKKLFLSTNYRCPKSIVGASDYLIKNNKMRNDKN-----------FKANKKDM 360

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V++  +       Q +                        RIA  I+ ++          
Sbjct: 361 VEINVRSYKDEREQSD------------------------RIAMDITKLMSMG------- 389

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGR 426
                 +D  +L R   ++  +           KI     D+     +H   KD++A  +
Sbjct: 390 --DYNYEDNAILYRTNVESRSLIDSF----IRKKIPFKLLDKEYNFFEHFICKDIIAYLK 443

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +   D  SF+ ++  P    S+ ++ K+          ++ +++       + +  I 
Sbjct: 444 LSIDSSDKESFLRIINKPFRYISKINLAKVEKDN-SGYDCFDILKENEKIPPFQLKK-ID 501

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV-LDEFLNFTLRNEQNSYS 545
            I + I      S       +L      Q          +D+   E +     +    Y+
Sbjct: 502 EIKKDIQNLNRMSLSGAINSVLHTLDYYQYLKDYSMKFKLDISELEEILEEFISASQDYT 561

Query: 546 SLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           ++   ++ + +         ++   N V   T+H  KG+E   VF+++            
Sbjct: 562 TIITFLAHISEVKDEIKNNKNNEEKNGVIFSTIHGVKGMEFKNVFIINCNENNIPFGKEH 621

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           +   +                                       RL YVG+TR  + L I
Sbjct: 622 EDIDIEEE-----------------------------------RRLFYVGVTRTIENLWI 646

Query: 665 CKHSNTSNEKKSNQRTWYDM 684
           C  +    + K   R   + 
Sbjct: 647 CMSNEIKGKNKVASRFIKEC 666


>gi|302524415|ref|ZP_07276757.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
 gi|302433310|gb|EFL05126.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
          Length = 1124

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/767 (13%), Positives = 224/767 (29%), Gaps = 99/767 (12%)

Query: 7   LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           ++   +    +     L       +     + + +   +     + +         +   
Sbjct: 115 VAGEPTVLTYHAYAGRLLSEHGLRLPVQPGVRLLSETSSWQLAHRVVSTWDNDLDTDRVP 174

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             +++  L       +++I+ E   +  +   ++ ++       R               
Sbjct: 175 PTVTAQLLALAGELGEHLISTEQLGQYTEWLCEIIENAPRAKGQRASLPVKLQEVLAAQR 234

Query: 127 LTLAK-YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             LA   L   Y   K+    LDF D +     L         +     +    +L+DE 
Sbjct: 235 FRLALLPLVEDYHRRKRAEGALDFADQMSLAAQLADGYPA---VVAGERERYGAVLLDEY 291

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT   Q  ++RSL             P  + AVGD  Q+IY + GA    + R      
Sbjct: 292 QDTGHAQRVLLRSLFG------GVDHPPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFP 345

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +R     +      L  SFR+  +IL + + +                            
Sbjct: 346 RRGEERLETAHEFGLLTSFRNPPEILELANAISEPLRQRG-------------------- 385

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               L  + +   D                  +E  A  +A+R                 
Sbjct: 386 ----LGVERLRARDGAGPADIAVALLPDVRAEREWVADAMAQRWHAE------------- 428

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            K+   +     VLVR+R D   I    R       + V       L D   + DL++  
Sbjct: 429 -KEASGKPPTAAVLVRRRADMAPIAAEMRM----RGLPVEVVGLGGLLDEPEVADLVSTL 483

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----------------- 468
           R +       +   +L    +  +  D+  +  + +E  +                    
Sbjct: 484 RVLADPLAGSAAARLLTGARWRIAAADVAALWRRANELTSPEPRAKEGEEPELVAERAEQ 543

Query: 469 -----------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                        ++++  G  + + +   +  L       S  +    +        + 
Sbjct: 544 AGLIDAVDEPGAPERYSPEGYRRIRRLGAELTALRRRLDQ-SLPELVADVERTMLLDVES 602

Query: 518 ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELE----QYPPTIKRAHSANHNEV 572
           ++R G+     LD F        E    ++L   +  L                   + V
Sbjct: 603 LARPGSAGRAHLDAFAEVVTDYAETAPTATLLSFVDYLNTAAHAEDGLTPGEVQVVPDRV 662

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM-------PSLNDDPGIPIWIPQS 625
           +++TVH+AKGLE  VV +    ++VF  K      +            D   +P      
Sbjct: 663 QVLTVHSAKGLEWEVVAVPHLVAEVFPGKRRSSSWLRTSTALPAHLRGDAADLPKLQISE 722

Query: 626 KSRNNIVSDLIKHLKK----STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                 V + ++  ++       +E  RL YV +TR+   L++  H    +  ++   + 
Sbjct: 723 GYDRKEVQEALELHEEGFVAREADEERRLCYVALTRSERALLVSGHWWNESSTRAKGPSI 782

Query: 682 Y--DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
           +  ++       D  +  + +     ++       +       P++ 
Sbjct: 783 FLTEIAEVMNEADPPLGVVDVWAEEPEEGDENPLVADSRTAQWPVDP 829



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 62/240 (25%), Gaps = 18/240 (7%)

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
               P+    + +  + +    Q    ++  P +  +++   L         +      L 
Sbjct: 898  PEDPDGWAADTDVLLAERARSQSTVDRVALPAQLSVSQLVDLASDADALAQRLRRPLPLP 957

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
             N    RG   H  L+  F+       + +             +       ++    EN 
Sbjct: 958  PNTFARRGTAFHSWLEQRFS------GDRLLEIDDLPGAADVGEAPDTDFEALQEAFENS 1011

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIE 894
                         ++V    +   + I + GR+D +         + ++KT        E
Sbjct: 1012 EWAD------RVPLAVEVPFSADIEGITLRGRMDAVYADPDGGWTVVDWKTGSVPS---E 1062

Query: 895  HIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
                    QL  Y          P + +     YV              +    +   +P
Sbjct: 1063 ERLPALAIQLGAYRLAWAALKKVPVERVRAAFHYVRHGHTLRPADLLDAEGLRSLLRNVP 1122


>gi|298737172|ref|YP_003729702.1| putative ATP-dependent helicase [Helicobacter pylori B8]
 gi|298356366|emb|CBI67238.1| putative ATP-dependent helicase [Helicobacter pylori B8]
          Length = 945

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 136/915 (14%), Positives = 291/915 (31%), Gaps = 173/915 (18%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
            P  +    ++   L         ++  +T    ++     + F    +  LT      +
Sbjct: 197 DPNKKEPVFDEESFLEKLRSLNNQIQSIETASDRAKEAIKCDSFRGFLNSSLTWLEKKSE 256

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            I  +++  + P L+ + ++ +++  +  +   T        A           Y++A  
Sbjct: 257 YIYFKKLKDEIPTLESECEEIENDLKRYYEARET--------ALFKKFPKFIQLYDKATS 308

Query: 143 KNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL  ++++    
Sbjct: 309 KIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSLNDYKILAPFI 368

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           ++   G       R++F VGD KQSIY+F G+                 +  + F    L
Sbjct: 369 DEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS-----------FSSLFESVSKDFYHDNL 417

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             + RS   I+  V+ +F         +       +   ++    G V++          
Sbjct: 418 QFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKTSQNKHVTEGYVKVSLVA------ 471

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                  +L  ++     N++             I  KDI +L 
Sbjct: 472 -------------------DERELLLDQVLQEAQNLLDHH----------IDPKDITILC 502

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
              KD   I    +   +  + S   + +        I  +    R+ L++E    F   
Sbjct: 503 ATNKDALEIKNYLQENLSAIRPSTESSAKLSQFVESKI--IKNALRYALAEEPYKPFYKH 560

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
               L  +  DD+  +     + E+V  ++ K                            
Sbjct: 561 SVLKLAGYLHDDVIALAGFNPKKESVAGFVWK---------------------------- 592

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                 +        Q          D  D FL      E+    S+    +        
Sbjct: 593 ---IMELFELYGEPAQICLELAVGCEDA-DGFL------EKLEAKSIASFNA-------- 634

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                       +IMT+H +KG++ P V + +      +  H  ++       +   +  
Sbjct: 635 ---------KGAQIMTIHKSKGMQFPYVIVCE-RLGKPNSSHSNQLLEEYDGAELLRLYY 684

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
            +   +  +   +  +   + +   E   + YV  TRA   LI+       ++K+S  +T
Sbjct: 685 RMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIVVAKDKKESKKESKNKT 744

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
             + +      +  +  +                    P+  PL     IK         
Sbjct: 745 MREQLDLVPLEEGEIMPV------------------ISPQKEPLITSALIK--------- 777

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                        P+       + + + +     +D +  N G+ +HK L+       + 
Sbjct: 778 -------------PHAYGEQVQEIEEEPSDYEKNNDQEAINFGIALHKGLEY--QYAYNI 822

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
            K  +  Y   +   +   +Y+ L  S+     +  +       +       G+     +
Sbjct: 823 PKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAEIQALFKNHALK-----GEAAFLFE 876

Query: 861 DIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
            ++   RID +   +   + + +YK+  +          +H AQ+S Y + LK   P+  
Sbjct: 877 GVV--SRIDVLLWDKGQNLCVLDYKSSQN-------YQQSHKAQVSHYAEFLKTQAPHFK 927

Query: 920 LVCLLIYVSEPKVFI 934
           +   +IY +  ++  
Sbjct: 928 IQAGIIY-AHKRLLE 941


>gi|255034929|ref|YP_003085550.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
 gi|254947685|gb|ACT92385.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
          Length = 1112

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 128/897 (14%), Positives = 278/897 (30%), Gaps = 122/897 (13%)

Query: 76   QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKSTLASLTLAK 131
             +           I  +   L+  L+    +   IR     +   Y      + +L+L  
Sbjct: 296  GEGVWYGAKTPAPIRDEIERLRTDLENYFHQIENIRSSETGKITLYNQLDRHIYNLSLLG 355

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             +   ++   K+N  +   D      D++ +  V  +I  ++ ++ NHIL+DE QDTS +
Sbjct: 356  EIRKEFDALLKQNNQVHISDFNRKIVDIVAREPV-PFIFERLGEKYNHILVDEFQDTSKL 414

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR--------- 242
            Q+  +  L E+   G   +        VGD KQSIY F G +   +L   +         
Sbjct: 415  QFANLLPLIENALSGGYFN------LIVGDAKQSIYRFRGGDMDLILHLAQSQVMRLGSI 468

Query: 243  -----INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                  N++R         I  L  + RS  ++    ++ F    ++ G        +  
Sbjct: 469  LGDSPFNEERLFALDNYLHINHLKTNRRSFREVTEFNNRFFGFIADSLGDEYPLIREVYD 528

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                      V                +        +   +E+S+  ++RR    ++++ 
Sbjct: 529  EHFSQEIPEGV--------SEGGHVEIEFLEMNDAPEEGAEENSSDQMSRRSLELVNSLR 580

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                            +DI +L RK+K+  ++    +         ++ +D   L    +
Sbjct: 581  SEG----------YHWRDIAILCRKKKEATMLANTLKE----AGFPLISDDALSLAYSRS 626

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            +  +++  + + S +  L+                       R +    +EY +    C 
Sbjct: 627  VHFIVSFMKVLHSSDHRLARYEAAY-----------LFHQVIRRQNPAPHEYEEIRMLCE 675

Query: 478  ISKFQHVIKYIHEL-----IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                   + Y  +          +  S  +   L++      +Q +        + L  F
Sbjct: 676  ERGLDSFLGYFRKWDISITSFKMRQVSVFELTELLMQQFGLFRQQLES------EYLFRF 729

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            L+  L       + L + ++  E            N + +RI T+H +KGLE PVV +  
Sbjct: 730  LDVVLEFGNRKSNHLGDFLNYWESARYKFSITVPDNTDAIRITTIHKSKGLEYPVVIIPY 789

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ---------------SKSRNNIVSDLIK 637
               +V  +  + ++ +     D   I +                    +  N +V +  +
Sbjct: 790  AQWKVSPNARLDRLWVDMDEVDYDEIRLADKPHYANAKLRSSMVSVVKELENTVVGEQYR 849

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              +  T  E   LLYV  TR   +L +        E       W                
Sbjct: 850  EERMRTLIENLNLLYVAFTRPVQRLYVLAKRERRWESGQQVNHWLR----------DYLG 899

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
             +       +    Y  S    + TP               + K + S  + +      +
Sbjct: 900  QEGFVPAWDETISRYVISEDPRDGTPGRLRHAHVSAGTSPFVMKSILSNDRTESLRLRRM 959

Query: 758  NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                 D +        L   +      ++ +L             + +     +   ++ 
Sbjct: 960  ADRIFDVQTFEPRHDRLQKMRY-----LLTRL------KTVSDLPDALEKLVGE--GIFT 1006

Query: 818  AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN 877
             KE + +      LL++  +      +++ +++    I       ++   ID++      
Sbjct: 1007 RKETREIESLTRSLLQDAALQVLYQDENHIQINKELLIP---GGKMLH--IDRVVQQPGG 1061

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
             +IF       V       P  H+      +K++K       +   ++   E ++  
Sbjct: 1062 EYIF----MSFVGGNSADEPRRHL------KKLIKAFMEGGKVSRGVLITLEDELVE 1108


>gi|313887953|ref|ZP_07821632.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846119|gb|EFR33501.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 619

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 93/554 (16%), Positives = 162/554 (29%), Gaps = 112/554 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               YE+ KK   ++DF+D+I  + D+LK       I  K       I +DE QDTS  Q
Sbjct: 164 FFETYEKFKKDRGLIDFDDMINLSYDILKNDPA---IMKKYRDRFKFIQLDEGQDTSRSQ 220

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + V++ L +              LF V D+ QSIY F GA  + + + K           
Sbjct: 221 FMVLKLLAK----------PNNNLFVVADDDQSIYGFRGANTEELFKLKDEY-------- 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           +      +  +FRST +I+ + +      E     +  +                     
Sbjct: 263 KDIKTFYMEDNFRSTKNIVNIANIFIGQNEKRFEKTLVTDNPF----------------- 305

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                D                     +I  +    +G      
Sbjct: 306 --------DKPVSIIKVKEPKDQYT------------------LIEEELKKEDG------ 333

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             DI VL R    +  +         ++ I    + +     H   +D++ +  F     
Sbjct: 334 --DIAVLYRNNLSSIGLVEYFERENYEFNIK---DKKTKFFSHFITRDILDILNFARDLS 388

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D   +           S+  I  +   + +                +K    I  +    
Sbjct: 389 DIDLYEKFYFKLKGYISKRHIEYLKRHKGKNIFNILKDYPDLPSYYNK---NINGLLVGF 445

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFI--SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                   ++    I             ++   E    L+E+L +     ++   SL   
Sbjct: 446 KKIARVDVYEAIDYIDKEMGYGDYLRENAKRFMETEATLNEYLYYLKMIAKS-TKSLDLF 504

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           I  L++    + +A   +   +   T+H+AKGLE   VF+VD            +     
Sbjct: 505 IGRLKELEYDLLKARDTDA-RLTFSTIHSAKGLEFSRVFVVDLYEGTLPSTSSIEGLRDD 563

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                             EE  RL YV MTRA  +L +     T
Sbjct: 564 PDL------------------------------YEEERRLFYVAMTRAKRELYLMYSHYT 593

Query: 671 SNEKKSNQRTWYDM 684
           + +K        D+
Sbjct: 594 NGKKNEISSFVTDL 607


>gi|15607770|ref|NP_215144.1| exonuclease V beta chain [Mycobacterium tuberculosis H37Rv]
 gi|15840031|ref|NP_335068.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis
            CDC1551]
 gi|148660402|ref|YP_001281925.1| exodeoxyribonuclease V subunit beta [Mycobacterium tuberculosis
            H37Ra]
 gi|148821832|ref|YP_001286586.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis F11]
 gi|167969058|ref|ZP_02551335.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis H37Ra]
 gi|215444746|ref|ZP_03431498.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T85]
 gi|253797568|ref|YP_003030569.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN 1435]
 gi|289552882|ref|ZP_06442092.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN 605]
 gi|289756711|ref|ZP_06516089.1| exonuclease subunit V beta [Mycobacterium tuberculosis T85]
 gi|294996146|ref|ZP_06801837.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis 210]
 gi|297633126|ref|ZP_06950906.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN 4207]
 gi|297730106|ref|ZP_06959224.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN R506]
 gi|306774738|ref|ZP_07413075.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu001]
 gi|306781532|ref|ZP_07419869.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu002]
 gi|306783276|ref|ZP_07421598.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu003]
 gi|306787645|ref|ZP_07425967.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu004]
 gi|306794411|ref|ZP_07432713.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu005]
 gi|306796381|ref|ZP_07434683.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu006]
 gi|306806449|ref|ZP_07443117.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu007]
 gi|306966649|ref|ZP_07479310.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu009]
 gi|306970842|ref|ZP_07483503.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu010]
 gi|307078566|ref|ZP_07487736.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu011]
 gi|313657433|ref|ZP_07814313.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN
            V2475]
 gi|8134453|sp|P96920|EX5B_MYCTU RecName: Full=Exodeoxyribonuclease V beta chain
 gi|1877367|emb|CAB07119.1| PROBABLE EXONUCLEASE V (BETA CHAIN) RECB (EXODEOXYRIBONUCLEASE V BETA
            CHAIN)(EXODEOXYRIBONUCLEASE V POLYPEPTIDE) (CHI-SPECIFIC
            ENDONUCLEASE) [Mycobacterium tuberculosis H37Rv]
 gi|13880176|gb|AAK44882.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis
            CDC1551]
 gi|148504554|gb|ABQ72363.1| exodeoxyribonuclease V subunit beta [Mycobacterium tuberculosis
            H37Ra]
 gi|148720359|gb|ABR04984.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis F11]
 gi|253319071|gb|ACT23674.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN 1435]
 gi|289437514|gb|EFD20007.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN 605]
 gi|289712275|gb|EFD76287.1| exonuclease subunit V beta [Mycobacterium tuberculosis T85]
 gi|308216631|gb|EFO76030.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu001]
 gi|308325701|gb|EFP14552.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu002]
 gi|308331937|gb|EFP20788.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu003]
 gi|308335722|gb|EFP24573.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu004]
 gi|308337301|gb|EFP26152.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu005]
 gi|308343158|gb|EFP32009.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu006]
 gi|308347097|gb|EFP35948.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu007]
 gi|308355672|gb|EFP44523.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu009]
 gi|308359627|gb|EFP48478.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu010]
 gi|308363506|gb|EFP52357.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu011]
 gi|323720985|gb|EGB30050.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CDC1551A]
 gi|328457349|gb|AEB02772.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis KZN 4207]
          Length = 1094

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/1011 (13%), Positives = 261/1011 (25%), Gaps = 169/1011 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
               E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 83   PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 142

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
             L             +       ++  D +    ++    + + D    +         +
Sbjct: 143  ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 202

Query: 124  LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 203  KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 260

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 261  VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 308

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                     AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 309  --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            +            +            +     ++L +     + A               
Sbjct: 361  LASAPRP--APFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 410

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 411  SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 466

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            + L     + +          +  F  + + +        +                   
Sbjct: 467  LCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTD------------------- 507

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              V   + E    A+       F     A  GR+    R G   +  L            
Sbjct: 508  -RVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAH 566

Query: 542  NSYSSLQELISELEQYP------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                 L  L   L +        P   R   ++   V+IMTV  AKGL+ P+V+L    +
Sbjct: 567  RERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN 626

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +      I        L  D G        K        +    +     +  RL YV +
Sbjct: 627  RNVRSDDIL-------LYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVAL 679

Query: 656  TRASDQLIICKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            TRA  Q++                    ++  Q    D       +++         +  
Sbjct: 680  TRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAG 739

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                             P+       +    +       +   + +     +  ++    
Sbjct: 740  GPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSYSDLVRGSEAVTVTSEPAA 799

Query: 766  GKTNLE-----------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            G    E                  L +     + G ++H +L+             + + 
Sbjct: 800  GGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAE-LEAQ 858

Query: 809  CTKNAKLWP-----AKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKI 855
              ++A  W      A+    L  ++  + + P+        +      D   E+     +
Sbjct: 859  VRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPL 918

Query: 856  NCPKKDII-------------------------------------------ISGRIDQIS 872
                                                               ++G ID + 
Sbjct: 919  AGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVL 978

Query: 873  ISQQ-NIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILKD 913
                    + +YKT+H      ++             +  Q  +Y  +L  
Sbjct: 979  RLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQALLYVVVLHR 1029


>gi|260185509|ref|ZP_05762983.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CPHL_A]
 gi|260203798|ref|ZP_05771289.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis K85]
 gi|289446185|ref|ZP_06435929.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CPHL_A]
 gi|289573232|ref|ZP_06453459.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis K85]
 gi|289419143|gb|EFD16344.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis CPHL_A]
 gi|289537663|gb|EFD42241.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis K85]
          Length = 1094

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/1011 (13%), Positives = 261/1011 (25%), Gaps = 169/1011 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
               E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 83   PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 142

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
             L             +       ++  D +    ++    + + D    +         +
Sbjct: 143  ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 202

Query: 124  LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 203  KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 260

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 261  VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 308

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                     AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 309  --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            +            +            +     ++L +     + A               
Sbjct: 361  LASAPRP--APFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 410

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 411  SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 466

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            + L     + +          +  F  + + +        +                   
Sbjct: 467  LCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTD------------------- 507

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              V   + E    A+       F     A  GR+    R G   +  L            
Sbjct: 508  -RVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAH 566

Query: 542  NSYSSLQELISELEQYP------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                 L  L   L +        P   R   ++   V+IMTV  AKGL+ P+V+L    +
Sbjct: 567  RERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN 626

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +      I        L  D G        K        +    +     +  RL YV +
Sbjct: 627  RNVRSDDIL-------LYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVAL 679

Query: 656  TRASDQLIICKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            TRA  Q++                    ++  Q    D       +++         +  
Sbjct: 680  TRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAG 739

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                             P+       +    +       +   + +     +  ++    
Sbjct: 740  GPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSYSDLVRGSEAVTVTSEPAA 799

Query: 766  GKTNLE-----------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            G    E                  L +     + G ++H +L+             + + 
Sbjct: 800  GGRADEVEIAVFAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAE-LEAQ 858

Query: 809  CTKNAKLWP-----AKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKI 855
              ++A  W      A+    L  ++  + + P+        +      D   E+     +
Sbjct: 859  VRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPL 918

Query: 856  NCPKKDII-------------------------------------------ISGRIDQIS 872
                                                               ++G ID + 
Sbjct: 919  AGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVL 978

Query: 873  ISQQ-NIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILKD 913
                    + +YKT+H      ++             +  Q  +Y  +L  
Sbjct: 979  RLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQALLYVVVLHR 1029


>gi|326905148|gb|EGE52081.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis W-148]
          Length = 1094

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 127/1008 (12%), Positives = 265/1008 (26%), Gaps = 163/1008 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
               E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 83   PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 142

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
             L             +       ++  D +    ++    + + D    +         +
Sbjct: 143  ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 202

Query: 124  LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 203  KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 260

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 261  VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 308

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                     AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 309  --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            +            +            +     ++L +     + A               
Sbjct: 361  LASAPRP--APFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 410

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 411  SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 466

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            + L     + +          +  F  + + +        +  T             ++ 
Sbjct: 467  LCLLEAFDAPQRSGLVRAAACTMFFGETAESL----AAEGDALTDRVAGTLRECADHARH 522

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            + V                      +L  + G +          +  + + L+     E+
Sbjct: 523  RGVAAVFQAAQ-------LAGMGRRVLSQRGGERDLTD------LAHIAQLLHEAAHRER 569

Query: 542  NSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 L++ +         PP   R   ++   V+IMTV  AKGL+ P+V+L    ++  
Sbjct: 570  LGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNV 629

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                I        L  D G        K        +    +     +  RL YV +TRA
Sbjct: 630  RSDDIL-------LYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRA 682

Query: 659  SDQLIICKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
              Q++                    ++  Q    D       +++         +     
Sbjct: 683  QSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPS 742

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                          P+       +    +       +   + +     +  ++    G  
Sbjct: 743  VEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSYSDLVRGSEAVTVTSEPAAGGR 802

Query: 769  NLE-----------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
              E                  L +     + G ++H +L+             + +   +
Sbjct: 803  ADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAE-LEAQVRR 861

Query: 812  NAKLWP-----AKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCP 858
            +A  W      A+    L  ++  + + P+        +      D   E+     +   
Sbjct: 862  HAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGG 921

Query: 859  KKDII-------------------------------------------ISGRIDQISISQ 875
                                                            ++G ID +    
Sbjct: 922  DLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLP 981

Query: 876  Q-NIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILKD 913
                 + +YKT+H      ++             +  Q  +Y  +L  
Sbjct: 982  GQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQALLYVVVLHR 1029


>gi|215402402|ref|ZP_03414583.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis 02_1987]
 gi|289744345|ref|ZP_06503723.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis 02_1987]
 gi|289684873|gb|EFD52361.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis 02_1987]
          Length = 1094

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 137/1011 (13%), Positives = 260/1011 (25%), Gaps = 169/1011 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
               E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 83   PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 142

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
             L             +       ++  D +    ++    + + D    +         +
Sbjct: 143  ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 202

Query: 124  LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 203  KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 260

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 261  VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 308

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                     AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 309  --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            +            +            +     ++L +     + A               
Sbjct: 361  LASAPRP--APFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 410

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 411  SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 466

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            + L     + +          +  F  + + +        +                   
Sbjct: 467  LCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTD------------------- 507

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              V   + E    A+       F     A  GR+    R G   +  L            
Sbjct: 508  -RVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAH 566

Query: 542  NSYSSLQELISELEQYP------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                 L  L   L +        P   R   ++   V+IMTV  AKGL+ P+V+L    +
Sbjct: 567  RERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN 626

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +      I        L  D G        K        +    +     +  RL YV +
Sbjct: 627  RNVRSDDIL-------LYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVAL 679

Query: 656  TRASDQLIICKH--------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            TRA  Q++                        +          V D        +     
Sbjct: 680  TRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAG 739

Query: 702  NSINKDEWIAYEWSTHHPENTP-------------LEREETIKQLMDEQKIPKKLFSPIK 748
                ++  I    S   P   P               R  +   L+   +       P  
Sbjct: 740  GPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDITWRRTSYSDLVRGSEAVTVTSEPAA 799

Query: 749  NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                +   +        G      L +     + G ++H +L+             + + 
Sbjct: 800  GGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAE-LEAQ 858

Query: 809  CTKNAKLWP-----AKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKI 855
              ++A  W      A+    L  ++  + + P+        +      D   E+     +
Sbjct: 859  VRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPL 918

Query: 856  NCPKKDII-------------------------------------------ISGRIDQIS 872
                                                               ++G ID + 
Sbjct: 919  AGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVL 978

Query: 873  ISQQ-NIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILKD 913
                    + +YKT+H      ++             +  Q  +Y  +L  
Sbjct: 979  RLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQALLYVVVLHR 1029


>gi|308376460|ref|ZP_07438909.2| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu008]
 gi|308351040|gb|EFP39891.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis SUMu008]
          Length = 1106

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/1011 (13%), Positives = 261/1011 (25%), Gaps = 169/1011 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
               E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 95   PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 154

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
             L             +       ++  D +    ++    + + D    +         +
Sbjct: 155  ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 214

Query: 124  LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 215  KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 272

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 273  VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 320

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                     AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 321  --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 372

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            +            +            +     ++L +     + A               
Sbjct: 373  LASAPRPA--PFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 422

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 423  SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 478

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            + L     + +          +  F  + + +        +                   
Sbjct: 479  LCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTD------------------- 519

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              V   + E    A+       F     A  GR+    R G   +  L            
Sbjct: 520  -RVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAH 578

Query: 542  NSYSSLQELISELEQYP------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                 L  L   L +        P   R   ++   V+IMTV  AKGL+ P+V+L    +
Sbjct: 579  RERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN 638

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +      I        L  D G        K        +    +     +  RL YV +
Sbjct: 639  RNVRSDDIL-------LYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVAL 691

Query: 656  TRASDQLIICKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            TRA  Q++                    ++  Q    D       +++         +  
Sbjct: 692  TRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAG 751

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                             P+       +    +       +   + +     +  ++    
Sbjct: 752  GPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSYSDLVRGSEAVTVTSEPAA 811

Query: 766  GKTNLE-----------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            G    E                  L +     + G ++H +L+             + + 
Sbjct: 812  GGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAE-LEAQ 870

Query: 809  CTKNAKLWP-----AKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKI 855
              ++A  W      A+    L  ++  + + P+        +      D   E+     +
Sbjct: 871  VRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPL 930

Query: 856  NCPKKDII-------------------------------------------ISGRIDQIS 872
                                                               ++G ID + 
Sbjct: 931  AGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVL 990

Query: 873  ISQQ-NIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILKD 913
                    + +YKT+H      ++             +  Q  +Y  +L  
Sbjct: 991  RLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQALLYVVVLHR 1041


>gi|15612511|ref|NP_224164.1| putative recombination protein RecB [Helicobacter pylori J99]
 gi|4156072|gb|AAD07027.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
          Length = 946

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 129/869 (14%), Positives = 266/869 (30%), Gaps = 176/869 (20%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T    +  +   +    LK ++   + E  +I +    Y   + T         
Sbjct: 243 FLNSSLTW---LEKKSEYRYFKKLKNEIPTLESECEEIENDLKRYYEAQETAIFKKF-PK 298

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y+ A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 299 FIQLYDNATSKIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSL 358

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY+F G+                 +
Sbjct: 359 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS-----------FSSLFES 407

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS   I+  V+ +F         +       +  +++    G V++
Sbjct: 408 VSKDFYHDNLEFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKTSNNKHVTEGYVKV 467

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 468 SLVA-------------------------DEKELLLEQILQEAQNLLEH----------R 492

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L    KD   I    +   +  + S   + +        I            
Sbjct: 493 IDPKDITILCATNKDALEIKNYLQEYLSAIRPSTESSAKLSQLVESKIIKNALEYALAEE 552

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD+  +     + E+                         
Sbjct: 553 PYKPFYKHSVLK--LAGYLHDDVIALPGFNPKKES------------------------- 585

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       F   I+   K  ++                L   +  E          
Sbjct: 586 ---------VASFVWKIMEQFKLYEEPAQSC-----------LELAVGCEDAD-----GF 620

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + +LE            N    +IMT+H +KG++ P V + +      +  H  ++    
Sbjct: 621 LEKLEAKEIASF-----NPKGAQIMTIHKSKGMQFPYVIVCE-RLGNPNSSHANQLLEEY 674

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 675 DGTELARLYYRMKNREVVDKDYARALDKEEAAKDHEEINVYYVAFTRAELGLIVVAKDKK 734

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            ++K+S  +  ++ +  +   +  +  +           +  +   +  +   +E E   
Sbjct: 735 ESKKESKNKKMHEQLELAPLEEGEIAPVISPQKEPLMTSVVIKPHAYGEQVQEIEEE--- 791

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                                        S  D +          D +  N G+ +HK L
Sbjct: 792 -----------------------------SDSDYEKNN-------DQEAINFGIALHKGL 815

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EV 849
           +       +  K  +  Y   +   +   +Y+ L  S+     +  +       +   E 
Sbjct: 816 EY--QYAYNIPKQSVLEYLNYHYGFYGL-DYQALEESLELFENDAGIQALFKNHALKGEA 872

Query: 850 SVSGKINCPKKDIIISG---RIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
           +            +  G   RID +   +   +++ +YK+  +          +H AQ+S
Sbjct: 873 AF-----------LFQGVVSRIDVLLWDRGQNLYVLDYKSSQN-------YQQSHKAQVS 914

Query: 906 IYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
            Y + L+   P+  +   +IY +  ++  
Sbjct: 915 HYAEFLRTQAPHFKIQAGIIY-AHKRLLE 942


>gi|260906256|ref|ZP_05914578.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
            domain-containing [Brevibacterium linens BL2]
          Length = 1128

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 145/884 (16%), Positives = 291/884 (32%), Gaps = 102/884 (11%)

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL----A 130
            T     ++        K    + +++       +   +            A +TL    A
Sbjct: 274  TWAKVAERKYTAVPGGKAPGAVPKQVLDESSARLVSEELLANSAFHSDIEALITLVIDTA 333

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                + YEE K    V+DF D  +   DLL+  +    +R  I      + +DE QD+S 
Sbjct: 334  IASLSAYEEHKNTLGVMDFVDQEVRALDLLRTNE---RVRASIASRYRLLAVDEFQDSSP 390

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            IQ  +   L +              +  VGD KQ+IY F GA+P+ +           T 
Sbjct: 391  IQLAIFMELADLVDE----------VIWVGDRKQAIYGFRGADPELMNDVFSALIDGKTE 440

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             G+  +   L  S+RST   L + + +FS    A    ++   +I  +   +  +G+ +L
Sbjct: 441  LGK-ATSENLGASWRSTEPALELSNTLFSSVF-ADQKEDEVVLSIPPQREHLRHIGSREL 498

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            W    +                  +    S+ + + + IA  + + +      S+G    
Sbjct: 499  WVPTTT------------------AGGTRSADTRMGKAIATGVEDFLQRSPQLSDGD--- 537

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++  DI VLVR       +    R       I  VG+    L      + + A    ++ 
Sbjct: 538  VKQGDIAVLVRTNSQVSRVVSELRE----RGIRAVGSTSD-LLSTREGQFVAAGLAAVVD 592

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            ++D ++   ++     + S D  F+   +  + +   +  + + +         +     
Sbjct: 593  RDDAVALAELVTLMPDHGSHDTWFEDAARIVDKKERRDQPRTWWDDPALAALSELAL--- 649

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN-----EQNSY 544
                A   SP D    I+ A    Q+  +    E  +  LD              +  S 
Sbjct: 650  ---NAAHHSPVDLLLSIMDALDLPQRIKAWTTPENRLATLDSLCQIAGEYADAAEQTRSP 706

Query: 545  SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             +   L+  L +   +     +  H+ V + T+H +KGL+ PVV +     + + H+ I 
Sbjct: 707  VTPAGLLDHLNEAAGS--YEQTTAHDAVLVTTMHQSKGLQWPVVIVGVPVDKDYGHREIT 764

Query: 605  ----KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI-----KHLKKSTQEEYNRLLYVGM 655
                 +        +  + +     K  + +   L          ++ ++E  RLLYV +
Sbjct: 765  VEKAPVFDARHPLANRALRLLPGVLKGYDPLKDRLRSLNAVSRASQAEKDETARLLYVAL 824

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE-- 713
            TRA    I+        +    +    D++                 +         +  
Sbjct: 825  TRAETYSIVAFGDPAGKDNVLTKSVSEDLLEWDLPTITNQTVGATEENGILRIANRRDNS 884

Query: 714  --------------WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN- 758
                          + T   E++  +     +       IP +  +P    +   +  + 
Sbjct: 885  NGKTVHQLPLRISAFPTDVEESSATDTAGPPRSFFARTDIPVRNSAPTGAGLPARFTASN 944

Query: 759  -PSTIDTKGKTNLESLLSDNQTF------NRGLIIHKLLQV-IFTLPEHKRKNFITSYCT 810
             PS         L  L               G  +H  L + +  L +  R        +
Sbjct: 945  VPSDGVEADVKILAELGEPLVARGGKDWDRVGDAVHAYLGLPLAKLTDELRGAAAERILS 1004

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD-IIISGRID 869
            +           +LL+ +     N       +    +EV     I        ++ G ID
Sbjct: 1005 RW--DADGVLNADLLIEV----GNRWNEWVKTTYPGAEVVTESPIAWRNDGAQVMEGWID 1058

Query: 870  -QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
             +I +   +  + ++K+ +     I HI   ++ QLS+Y + L+
Sbjct: 1059 SRILVQNGDNILVDHKS-YPGTHPIGHIRDNYLGQLSVYSQALQ 1101


>gi|50292981|ref|XP_448923.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528236|emb|CAG61893.1| unnamed protein product [Candida glabrata]
          Length = 1088

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 99/652 (15%), Positives = 200/652 (30%), Gaps = 137/652 (21%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
            SPD     K  +    +++      + +K   A  +   +    Y++   K   LDF+D
Sbjct: 182 DSPDWDVHQKLIKKHISRLKSSAILPQEYKDDSAHDSALSHFYELYQDELFKLNALDFDD 241

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           L++ T  LL       +++        H+ +DE QDT+ IQ +++  L          H 
Sbjct: 242 LLMFTFRLLTAERCLPFVQ--------HVFVDEFQDTNSIQIDLMFLLAR------GNHH 287

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
             R +  VGD  QSIY+F  A            Q+ +     + S + L  ++RS+  IL
Sbjct: 288 ISRGITVVGDPDQSIYAFRYALAHN-------FQEMSNKCPLECSRVILVENYRSSQKIL 340

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              + +    +  +         +  ++     +  V +                     
Sbjct: 341 DTSETLIKQQQKGRE------QRLPLKAQFTSHILPVYMNFPAYFLE------------- 381

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                         A  IA  I  +             +       +LVRKR+   +I  
Sbjct: 382 --------------APSIAREILYL--------KSLPNLFSYDSFAILVRKRRQIRMIEK 419

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                  +Y+I           +   I  ++ + R ++S+ D+ + +  L  P   F + 
Sbjct: 420 SL----IEYRIPYQILRGRAFWELKEIMAMLNIFRIMVSENDEEAIISSLSYPSRGFGDT 475

Query: 452 DIFKICTQRHE-------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF- 503
              ++     +              I +         + V+  + +L+      +  +  
Sbjct: 476 SAERLREIFAKYTDKTKLEILNLIAIGRVYVDIPKSARGVVSGLCKLVEECNKENGQELS 535

Query: 504 ------FTLILGAKKGRQQFISRFG---------------NEVIDVLDEFLNFTLRNEQN 542
                 F LI      + +F+ + G               N     +    ++ +  E+N
Sbjct: 536 VRLVKVFDLIYEKSGLKHEFLFKDGKKKGEIDIDGDPNLENPRHKNIQLLRSYFVDTEEN 595

Query: 543 SYSS-------------------------LQELISELEQYPPTIKRAHSANHNE-----V 572
              S                         + + ++ L  +      A + + N+     V
Sbjct: 596 QDDSMINQENTALSSINTTKSHGISLADYILQFLNSLSLFAGEKTVATTDDGNKGTLGTV 655

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFS---HKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            + T+H +KGLE PVVF+                          D         +    N
Sbjct: 656 TVCTIHGSKGLEWPVVFIPGCEDNNIPAIFSDDKDNTSDNEEEGDGDNKEELTNKKSQNN 715

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           N+         + + +E  R+ +V  TRA   L +   ++           +
Sbjct: 716 NV---------EESIDEERRMFFVAQTRAKYLLYLSSVTDMDAAVPRVPSRF 758


>gi|310639683|ref|YP_003944441.1| ATP-dependent DNA helicase pcra [Paenibacillus polymyxa SC2]
 gi|309244633|gb|ADO54200.1| ATP-dependent DNA helicase PcrA [Paenibacillus polymyxa SC2]
          Length = 747

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 106/634 (16%), Positives = 208/634 (32%), Gaps = 71/634 (11%)

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
            F  +K     + +  +I K   +++ +    +D       +           A   +  
Sbjct: 165 LFDIEKVEWATHEMANKIEKWYEEIRSRGYSVKDMVENTFAQDEKDDNQNYRNAIAHILN 224

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L ++Y+E K     +D  DL+  +  L++       I   +     ++ +DE QDT  +
Sbjct: 225 MLESNYQEVKNSVNGMDTNDLLHKSATLIEHH--RDQITPLVASRFQYLFVDEFQDTDEL 282

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  +I+ L+             + +  VGD KQ+IY+F G++        R+ +K A + 
Sbjct: 283 QMRIIQELS----------PKLQHVLVVGDRKQAIYAFRGSD-------HRVLEKIANDN 325

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED--STTTIRHRSSRIGQVGTVQ 309
            +    + L  S R T  +      +F+          D  +     H  +        +
Sbjct: 326 KKPL--LSLSASRRPTMPLFQAQTSLFTHMGERYNFLLDKSTQADDAHNPTDSLVPFQYE 383

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                  +                           +A+R+   I+  IG      +   R
Sbjct: 384 HINVYSERTLP------------------------IAQRLVEKINEFIGQQIDDRSEGLR 419

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I+ +DI VL R                    I +  +          I     + + I+
Sbjct: 420 QIEYRDICVLFRSNYQLSQY-----ASLMPESIPIQTDFGGGFFRKPEIISCYYMLQAII 474

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              DD+S    L +P           I     E   + ++            Q   + I 
Sbjct: 475 KYPDDVSLDLALGTPF--LPFKASSSIYRSTGENLVLCDW-----FENEEDCQEWYEGIQ 527

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           ++    +        T I    K R+ +      + +  L++ + ++         +LQ+
Sbjct: 528 KIRKQMKLDLVPKLLTDIYEFTKVRESYGKLGDLQAVANLEKLVMWSRDLMNTEALTLQQ 587

Query: 550 LISELEQY-------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                +                     N+VR  T+H+AKGLE P+V + D G  +    +
Sbjct: 588 FFDRFQSALLSGMETDEASTGEEEIRSNKVRFSTIHSAKGLEYPIVIIPDIGRPLLMEDN 647

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
           I      P    D    + +P     ++  ++ I   + +  EE  R+ YV +TRA   +
Sbjct: 648 IPDFIPHPEWGID----LKLPGEVGSSSKYNEWIGSYRSNFLEEEARIFYVAVTRAEHVI 703

Query: 663 IICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERV 695
            +  H    + +      +W D V  +    ER+
Sbjct: 704 CLIGHGKTKAGQIGDQNWSWQDEVLSARSALERL 737


>gi|254457061|ref|ZP_05070489.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
 gi|207085853|gb|EDZ63137.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
          Length = 905

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 130/924 (14%), Positives = 285/924 (30%), Gaps = 208/924 (22%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--KKAQTLQQASQTQCIEERFSLL 69
               I         F+  +   +   +ME          + +      +     + F  L
Sbjct: 170 DEFYIKHQELSHLKFEKQEFLHFEQEAMENLGYLRDIINRCEGASATVKKAVEADDFEEL 229

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
           +      + +      ++        L  +++ +     + +++   Y + + T      
Sbjct: 230 ALKSWIGRESLDYRTFSKCFTPDMNSLLTRIQDAVKNQNRAKEQNFFYALSELTGI---- 285

Query: 130 AKYLNAHYEEAKK----KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                  Y++AKK    ++  L F D+ +    +LK+R  S ++ +++D  I HIL+DE 
Sbjct: 286 -------YQKAKKALYTEDSELSFNDVTVLVYHILKERIDSEFLYFRLDSAIEHILLDEF 338

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDTS++Q+E+++ L ++   G        + F VGD KQSIY F G         K    
Sbjct: 339 QDTSILQYEILKPLIDEILSGSGVSEDG-SFFFVGDVKQSIYRFRGGVSALFGAVKEE-- 395

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      +  L  ++RS  +++  V++ F          +                
Sbjct: 396 -------CNTEVEALLTNYRSQREVIEFVNRTF---------IDKINNYAPQHVREEADA 439

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
           G V++        +S                                +  ++        
Sbjct: 440 GYVEVISSEEILEES-----------------------------ISQVKRLLQLG----- 465

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    ++ +L     D      + + +  +  I VV      L +  ++K ++   
Sbjct: 466 -----ADINEVAILCATNGDG----EVIKQMLQEENIEVVTETTTKLINQKSVKAVLEYL 516

Query: 426 RFILSQED--DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           +++   ++    +F  ++   + + S  ++ K    R    ++ EY     +  + +F  
Sbjct: 517 KYLYFGQEIYKHNFFALINQEVRDISRVNLTKTKLLRVIKNSIAEYRLFSDDFHLIRFLD 576

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           V+                                         + ++  L      E+  
Sbjct: 577 VVGK--------------------------------------YEDIEALL---FEYERLD 595

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            S                    +++ N VR++T+H +KGLE   V ++D   +    +  
Sbjct: 596 ASG------------------AASDLNGVRVLTIHKSKGLEYEHVIVMDRLKKAPPARDA 637

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
             +           + + I    + +    + +   K   +E+    LYV  TRA + L 
Sbjct: 638 --IIYEYDGIKLEDVYLRIKGRDAIDAEYEEALAKEKYLAKEDSLNALYVAFTRARENLF 695

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +             + + +DM+                N   K        +T+      
Sbjct: 696 VI---------LKPKDSTFDML----------------NLEPKSSGELICKNTNAQIKAV 730

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
              +E   + +        L                           +S   D +  N G
Sbjct: 731 APSKELNYKDLYYGTQSDILKLE------------------------DSSDEDLKAINFG 766

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
           L +H +L+++        +N       K        E +++   + R+LEN    +  S 
Sbjct: 767 LALHYMLEMLGDFSIKSVQNAKYMMINKYGYSLQNSEIEDIERRVVRVLENTEFISLASG 826

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
           + Y E ++  K N           ID +      +  + +YK+              H+ 
Sbjct: 827 ERYKEKALRYKDNLRY--------IDLLVKQDDGSWVVIDYKSS-------MSYSDKHVQ 871

Query: 903 QLSIYEKILKDSYPNKSLVCLLIY 926
           Q++ Y K +K+      +   + Y
Sbjct: 872 QVNYYVKAIKEI-TGAEVKGYIAY 894


>gi|261838828|gb|ACX98594.1| ATP-dependent nuclease [Helicobacter pylori 51]
          Length = 949

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 129/866 (14%), Positives = 259/866 (29%), Gaps = 169/866 (19%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T  K        KK  D    L+   +E      R+          A       
Sbjct: 245 FLNSSLTWLKKKGEYRDFKKIKDEIPTLESECEEIENDLKRYYEA----RESALFKKFPK 300

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D  I HILIDE QDTSL
Sbjct: 301 FIQLYDKATSKIQALDFDAIKDKVHALLNGYEEMPAEFFYFRLDSRIAHILIDEFQDTSL 360

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY F G+                 +
Sbjct: 361 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYGFRGS-----------FSSLFES 409

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS+  I+  V+ +F         +       +  S+   + G V++
Sbjct: 410 VSKDFYHDNLEFNHRSSPLIINYVNAIFKKAYQNSPTAYLEQKYPKASSNNHARDGYVKV 469

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 470 SLVA-------------------------DERELLLEQILQEAKNLLEH----------R 494

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I+ KDI +L     D   IT   +   +  + S   + +        I            
Sbjct: 495 IEPKDITLLCATNDDALEITNYLQKNLSAIRPSTESSAKLSQFVESKIIKNALEYALAEE 554

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   +     + E+                         
Sbjct: 555 PYKPFYKHSVLK--LAGYLHDDAIALAGFNPKKES------------------------- 587

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       F   ++                    L E      +         ++ 
Sbjct: 588 ---------VAGFVWKVME-------------------LFELYTECAQICLELAVGCEDA 619

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              L++       +  A     +IMT+H +KG++ P V + +   +  ++    +     
Sbjct: 620 NEFLKKLEAKEIASFKAEG--AQIMTIHKSKGMQFPYVIVCERLGKPKTNNS-NQFLEEY 676

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           S  +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 677 SGTELTRLYYRMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIV------ 730

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
                         V       +  K+ K      K +    E     P  +  +     
Sbjct: 731 --------------VAKDKDQKKDKKESKNKGMREKLDLAPLEEGEIAPVISSQKEPSPE 776

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
             L+      +++                   + + + +     +D +  N G+ +HK L
Sbjct: 777 SVLIKPHAYGEQVQ------------------EIEEEPSDYEKNNDQEAINFGIALHKGL 818

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EV 849
           +          K  +  Y   +   +   +Y+ L  S+     +  +       +   EV
Sbjct: 819 EY--QYAYRIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQALFKNLALRGEV 875

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           +         + ++   RID +   +   +++ +YK+  +          +H  Q+S Y 
Sbjct: 876 AF------LFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSHKVQVSHYA 920

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFI 934
             L+   P+  +   +IY +  ++  
Sbjct: 921 AFLQTQAPHFKIQAGIIY-AHKRLLE 945


>gi|294785294|ref|ZP_06750582.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 3_1_27]
 gi|294487008|gb|EFG34370.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 3_1_27]
          Length = 1075

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 125/865 (14%), Positives = 284/865 (32%), Gaps = 120/865 (13%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            N + +  + +  +     +    E   +        +         L+  +   Y+  K 
Sbjct: 305  NKLKKASDAEHKEYINSRQDELKEI--LSKEIFNEVLIPYEEKVFELSSEIYNLYDSFKI 362

Query: 143  KNCVLDFEDLIINTN-------DLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWE 194
            ++    F D+ I T        + L+  +    I ++ +D  I  I IDE QDTS++QW+
Sbjct: 363  RDKKFTFSDIAIYTYMAIFNKNNALRDENGLTDIFFETLDMNIEAIFIDEFQDTSILQWK 422

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++   T+            +++  VGDEKQSIY +   E +     + I           
Sbjct: 423  ILYEFTK----------RAKSVICVGDEKQSIYGWRDGEKRLFENLETIL---------D 463

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                 L  S+RS  +I++  ++ F   E                         ++ W+  
Sbjct: 464  AKKDNLDKSYRSDRNIVSYCNQFFKAIEK------------------------MEDWKFS 499

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
             S+ +S+ +   ++          E                 +  +T+     K++    
Sbjct: 500  TSEINSKNDGYVKAICIKDLQDEIEDEEQ----------KKELNINTVLLQELKKIEPYD 549

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            ++ ++ R   +   I  L    K    I  + N+   ++++  I +   L ++++  E++
Sbjct: 550  NVAIIARTNAELSEIANLLEDEK----IPYILNNEKDISEYSGIFECFELLKYLV-YENE 604

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI---SKFQHVIKYIHEL 491
            L+    + SPL NF   +I  +   + E  +   + Q           K    ++ I  L
Sbjct: 605  LALFNFISSPLSNFGTAEIEILLKNKKELFSYINFSQDNDFINSLENKKIIRFLEKIVFL 664

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                +  +  D    I+   +    F      +    + +F   T          L+ L 
Sbjct: 665  KKNYKNFTVQDLIFEIIKKFQFIDYFNKDNEVK---NIYDFYLLTNYYSSI----LELLN 717

Query: 552  SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                +         ++    + ++T+H +KGLE    F++    +  +        +   
Sbjct: 718  DY--KENKLSLSDTNSEKKGIELVTIHKSKGLEFKTTFVIKNSKKSKTDDIDFLFEMNDH 775

Query: 612  LNDDPGIPIWIPQ-SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             ++                    + I++  K  +EE     YV +TR  + LII      
Sbjct: 776  YDETVFSLFCKKGYKSILETCFKEKIENYDKKIKEEEINNFYVALTRPKNNLIIIYEDRF 835

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
              +K  N+ +  ++     + ++   +  + N     +      S +  +N  +  E+  
Sbjct: 836  FEKKSLNEFSSEEL--KGINLEDISFEKSVINDFFDCKIGEISLSNNSQKNENIIEEDLE 893

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
              L++ Q          + +                  + + LL   +    G+++H   
Sbjct: 894  SDLLNSQPYFTSSIYENEEEAE-----------NIEINDSKFLLETEEKRMIGILVHYFF 942

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSCDSYSE 848
            + +    + + K   T    K    +  ++   +    +I   L         S   ++ 
Sbjct: 943  ENLKYGTDEEVKFSKTLCYKKYLSYFGEEKLDKIFSKENIEMFLTKD--KEIFSKK-WNH 999

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            +     +   ++      RID++ I         I+I ++KT                 Q
Sbjct: 1000 IYSEYVLYDYEEKK--EYRIDRLMIKDNGDGTGEIYIVDFKTGGKDKS-----------Q 1046

Query: 904  LSIYEKILKDSYPN---KSLVCLLI 925
            L  Y+ +LK ++       +    +
Sbjct: 1047 LKTYKDVLKKNFEELQKYKIRTKFL 1071


>gi|215429463|ref|ZP_03427382.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis EAS054]
 gi|260199635|ref|ZP_05767126.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis T46]
 gi|289442022|ref|ZP_06431766.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis T46]
 gi|289752672|ref|ZP_06512050.1| exonuclease subunit V beta [Mycobacterium tuberculosis EAS054]
 gi|289414941|gb|EFD12181.1| exodeoxyribonuclease V, beta subunit [Mycobacterium tuberculosis T46]
 gi|289693259|gb|EFD60688.1| exonuclease subunit V beta [Mycobacterium tuberculosis EAS054]
          Length = 1094

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/1011 (13%), Positives = 261/1011 (25%), Gaps = 169/1011 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
               E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 83   PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 142

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
             L             +       ++  D +    ++    + + D    +         +
Sbjct: 143  ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 202

Query: 124  LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 203  KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 260

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 261  VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 308

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                     AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 309  --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            +            +            +     ++L +     + A               
Sbjct: 361  LASAPRPA--PFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 410

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 411  SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 466

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            + L     + +          +  F  + + +        +                   
Sbjct: 467  LCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTD------------------- 507

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              V   + E    A+       F     A  GR+    R G   +  L            
Sbjct: 508  -RVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAH 566

Query: 542  NSYSSLQELISELEQYP------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                 L  L   L +        P   R   ++   V+IMTV  AKGL+ P+V+L    +
Sbjct: 567  RERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN 626

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +      I        L  D G        K        +    +     +  RL YV +
Sbjct: 627  RNVRSDDIL-------LYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVAL 679

Query: 656  TRASDQLIICKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            TRA  Q++                    ++  Q    D       +++         +  
Sbjct: 680  TRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTLRVTDEQAWAVFAQWEAAG 739

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                             P+       +    +       +   + +     +  ++    
Sbjct: 740  GPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSYSDLVRGSEAVTVTSEPAA 799

Query: 766  GKTNLE-----------------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            G    E                  L +     + G ++H +L+             + + 
Sbjct: 800  GGRADEVEIAVVAAPGSGADLTSPLAALPSGASFGSLVHAVLETADPAAPDLAAE-LEAQ 858

Query: 809  CTKNAKLWP-----AKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKI 855
              ++A  W      A+    L  ++  + + P+        +      D   E+     +
Sbjct: 859  VRRHAPWWTVDVDHAQLAPELARALLPMHDTPLGPAAAALTLRQIGVRDRLRELDFEMPL 918

Query: 856  NCPKKDII-------------------------------------------ISGRIDQIS 872
                                                               ++G ID + 
Sbjct: 919  AGGDLRGRSPDVSLADVGELLASHLPGDDPLSPYADRLGSAGLGDQPLRGYLAGSIDVVL 978

Query: 873  ISQQ-NIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILKD 913
                    + +YKT+H      ++             +  Q  +Y  +L  
Sbjct: 979  RLPGQRYLVVDYKTNHLGDTAADYGFERLTEAMLHSDYPLQALLYVVVLHR 1029


>gi|109946901|ref|YP_664129.1| putative recombination protein RecB [Helicobacter acinonychis str.
           Sheeba]
 gi|109714122|emb|CAJ99130.1| ATP-dependent nuclease subunit A [Helicobacter acinonychis str.
           Sheeba]
          Length = 966

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 129/891 (14%), Positives = 265/891 (29%), Gaps = 185/891 (20%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           E F    +  LT      +    +++  + P L  K ++ +++  +  +   T       
Sbjct: 237 ESFKEFLNSSLTWLEKKSEYKYFKKLKDEIPTLDTKCEEIENDLKRYYEARET------- 289

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD--------------VSAWI 169
            A           Y+ A  K   LDF  +    + LL  ++               + + 
Sbjct: 290 -ALFKKFPKFIQLYDNATSKIQALDFSAIKDKVHVLLDNQENSYKNNYKNSYGNMPAEFF 348

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
            +++D +I HILIDE QDTSL  ++++    ++   G        ++F VGD KQSIY F
Sbjct: 349 YFRLDSKIAHILIDEFQDTSLNDYKILAPFIDEIKAGIGQAKCQGSVFLVGDVKQSIYGF 408

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            G+         +                 L  ++RS+  I+  V+ +F         + 
Sbjct: 409 RGSCSSLFESVSKDFYHD-----------NLEFNYRSSPLIINYVNTIFKKAYQNSSTAY 457

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                 +  +++    G V++                             +   +L  ++
Sbjct: 458 LEQKYPKTSNNKHATDGYVKISLVA-------------------------NEKELLLNQV 492

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                N++             I  KDI +L    KD   I    +   ++   S   +  
Sbjct: 493 LQEAKNLLEHH----------IDPKDITILCTTNKDALEIKRHLQERLSEIHPSTESSAN 542

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
                   I                     +LK  L  +  DD+  + +   + E+    
Sbjct: 543 LSQFVESKIIKNALEHALAEEGYKPFYKHSVLK--LAGYLHDDVIILPSFNPKKES---- 596

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                                            F   ++   +  +           + +
Sbjct: 597 ------------------------------VASFVWRVMEQFELYE-----------EPV 615

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
              L   +  E  +          LE+     K+  S N    +IMTVH +KG++ P V 
Sbjct: 616 QSCLELAVGCEDAN--------EFLEK--LETKKIASFNAKGTQIMTVHKSKGMQFPYVI 665

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           + +  +         K        +   +   + + +  +   +  ++  K +   E   
Sbjct: 666 VCERLNSPK-SGPTSKFLEEYDNTELMRLYYRMKKREVVDKDYARALEKEKVAKDHEEIN 724

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             YV  TRA   LI+         K   ++       +   +++       T  I     
Sbjct: 725 KYYVAFTRAELGLIVVAKDKDQAAKDKGKKKDTKENKNKEMHEKLDLAPLETGKITPIIS 784

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
              E         P    E ++++ +E  I                              
Sbjct: 785 SKKEPLITSTLIKPHAYGEQVQEIEEEPDIDY---------------------------- 816

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                 + +  N G+ +HK L+       +  K  +  Y   +   +        L    
Sbjct: 817 --EKNDNQEAINFGIALHKGLEY--QYAYNIPKESVLKYLNYHYGFYGLDN--QALEESL 870

Query: 830 RLL-ENPMMTTAMSCDSYS-EVSVSGKINCPKKDIIISG---RIDQISISQQN-IFIFEY 883
            L   +  + T    ++   EV+            +  G   RID +   +   + + +Y
Sbjct: 871 ELFKNDREIQTLFKNNALKGEVAF-----------LFQGVVSRIDVLLWDRGQNLHVLDY 919

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
           K+  +          +H  Q+S Y + L+   P+  +   +IY +  ++  
Sbjct: 920 KSSQN-------YRQSHKVQVSHYAEFLRTQAPHFKIQAGIIY-AHKRLLE 962


>gi|257451434|ref|ZP_05616733.1| DNA helicase II [Fusobacterium sp. 3_1_5R]
 gi|317058014|ref|ZP_07922499.1| DNA helicase II [Fusobacterium sp. 3_1_5R]
 gi|313683690|gb|EFS20525.1| DNA helicase II [Fusobacterium sp. 3_1_5R]
          Length = 901

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 117/838 (13%), Positives = 252/838 (30%), Gaps = 158/838 (18%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEV 185
           +   K     Y+   +K   + F  + +     LL+  +       K+  +I++++IDE 
Sbjct: 176 IQFLKEAYLLYQNLLRKENKMSFSAIQMELYHSLLEYPE----FLEKVQTKIHYVMIDEY 231

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD++ IQ ++I  L+  +          + +  VGDE Q+IY F GA  + +LR  ++ +
Sbjct: 232 QDSNPIQEKIILLLSGKY----------KNICVVGDEDQAIYRFRGATVENILRFPQVFE 281

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +           + L  ++RS+ +I+ + ++  +  +                       
Sbjct: 282 ED-------CETVYLEKNYRSSEEIVHLCNQWMNRVD----------------------- 311

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                W+       S               +   S++      I   +  +     I   
Sbjct: 312 -----WQGERFDKHSYSARYDTIERKSVFRISGSSNSRKRNELI-TWLKELKERKKIED- 364

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                     I+ L    +   +             I V             +K    + 
Sbjct: 365 -------YSQIVFLFDNFRSPQV--KRLEEDLEMAGIPVYCPRARNFFSREEVKLFFGVF 415

Query: 426 RFILSQEDD------LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
             +  +  +          C+ +       + D+ K   ++ E E        +     S
Sbjct: 416 MVLSPKIQESVKGYSYYEECLFRVRRLAKDDKDLQKWILEQREKEIGDFLEIYYQILSFS 475

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            F+ +++   E +   +          IL + +   +       E ++ L+ F       
Sbjct: 476 PFREILEKQEEDVRRGREIYNLSLIGNILQSFQKLCKMKEDSKVERLEYLEYFFQ----- 530

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                     L   +E+     ++        +  +T+H +KGLE  +V L         
Sbjct: 531 --------SYLKKFIEKGVNEFEKKGEFPKGCIPFLTIHQSKGLEFSIVVLSSLYQN--- 579

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                           P +     +    +      +         ++ R  YV  +RA 
Sbjct: 580 ----------------PPVYREKIRKSYDSLFQKKKLLQEHNEELYDFYRKFYVAFSRAK 623

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           + LI          + +   ++   V  S                     +    S  H 
Sbjct: 624 NALIFL--------EDNVSSSFQAFVRHS---------------------VDIVSSDFHW 654

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
           E+ P E   + +++                       L P       K +  SL  +N  
Sbjct: 655 EDIPEEEYNSAEEMQTYSYTTDIASY----------DLCPRRYFFLRKISFPSLEREN-- 702

Query: 780 FNRGLIIHKLLQVIFTLPEHKR--KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
              G ++H+ L+ +   P+     +  I     K  K       +  +  + ++L+    
Sbjct: 703 MIFGTLLHRCLERLHKYPDKIISLEEMIGKEKEKLEKKSKFFFQEEDIKMVYKILQEYQG 762

Query: 838 TT--AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
                      +E    GK     +  +I G ID +++ +    I ++KT    P     
Sbjct: 763 KAVNLYDEILQAE----GKEFLEWQGNMIYGEIDLLALQENQWKIIDFKTGKENPS---- 814

Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV--FIIPQNKLNKAFAEISTKI 951
               +I QL +Y+ +L+     K +   L Y+ E +     +   +      +I   I
Sbjct: 815 ----YIEQLVLYQNLLRKYGKEKEIRLSLYYLLEQREEKIELSLKEEVAILEKIQRTI 868


>gi|240169399|ref|ZP_04748058.1| exonuclease V beta subunit recB [Mycobacterium kansasii ATCC 12478]
          Length = 1089

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 132/1016 (12%), Positives = 267/1016 (26%), Gaps = 182/1016 (17%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSL----SMETGNPTILKKAQTLQQA 56
            +++  G    E    + +    L  F  + I              G         TL+++
Sbjct: 88   VRHLLGSEA-ERAVRLARLRDALANFDAATIATTHEFCGSVLRSLGVAGDSDSGFTLRES 146

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                  E       + F      P            +    + L  +++       +   
Sbjct: 147  LDDLVAEIVDDRYLARFANTDTDP------------ALTYAQALDLARNVVGDPYAQRRP 194

Query: 117  YKMFKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                  + A + L  A+ +    E  K++  +L ++DL++  +  L   D  A  R +  
Sbjct: 195  LDPDPDSAAGVRLDFAEQVLDELERRKRRLRILGYDDLLLRLSKALAAADSPARDRMRRR 254

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
              I  +L+DE QDT  IQW+V+                  TL  +GD KQ+IY F G + 
Sbjct: 255  WRI--VLVDEFQDTDPIQWQVLER----------AFRGVSTLIMIGDPKQAIYGFRGGDI 302

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               L+  R             +     +++RS   ++  +  V                 
Sbjct: 303  YTYLKAAR----------TADARYTFGVNWRSDRVLVESLQTVLRGAALGHPEIVVHDIE 352

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              H   R+        +   V +                 ++P       +   +A  I+
Sbjct: 353  AHHGGHRLQGAPRGAPFRLRVVRR-------PTVGYDGTANVPIGVLREHIPADLAGDIA 405

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +++ +   F+    R + A DI V+V   +D                I  V      +  
Sbjct: 406  SLLSSGARFAE---RPVAAGDIAVIVEHHRDARACRDAL----ARAGIPAVYTGDTDVFA 458

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              A KD + L     + +          +  F  + + +        +            
Sbjct: 459  SRAAKDWLCLLEAFDAPQRSGLVRAAACTMFFGETVETLAAEGDALTD------------ 506

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                     V   + E    A+       F     A  GR+    R G   +  L     
Sbjct: 507  --------RVAATLREWTDQARLRGVAAVFEAAQLAGMGRRVLGQRGGERHMTDLAHLAQ 558

Query: 535  FTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                        L  L   L +            R   ++   V+IMTV  AKGL+ P+V
Sbjct: 559  LLHETAHRQRYGLPALRDWLRRQCDDTTRAAEQNRRLDSDAAAVQIMTVFVAKGLQFPIV 618

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            ++       F+    ++  ++   + D              +    + +  +     +  
Sbjct: 619  YVPFL----FNRNVRREDIMLYHDDTDTRCL------YLGGDNSRSVEELNRAEAARDNI 668

Query: 649  RLLYVGMTRASDQLIICKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKI 698
            RL YV +TRA  Q++                    + S      D       +D+     
Sbjct: 669  RLTYVALTRAQSQVVAWWAPTIDEVNGGLSRLLRGRGSGDPLVPDKCAPRIRDDDAWAVF 728

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                             +     T    +    +    Q       +     +     + 
Sbjct: 729  TRWQEAGGPSVEESTIVSPAAIETASSADGFAVRHFHRQIDTTWRRTSYSALVRAADAIV 788

Query: 759  PSTIDTKGKTNLE--------------------SLLSDNQTFNRGLIIHKLLQVIFTLPE 798
             S + ++ + ++                      L +       G ++H +L+       
Sbjct: 789  TSGVTSEPEVDVRDDEVDAVVVSEPGSGADLDSPLAAMPSGAAFGSLVHAVLETADPQAA 848

Query: 799  HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVS 850
                                 +   L  ++  + ++P+        +      D   E+ 
Sbjct: 849  DLAGELEEQVRRHAPWWPVDTDAAELATALVPMHDSPLGLLAGDLTLRQIGVRDRLRELD 908

Query: 851  VSGKINCPKKDII-------------------------------------------ISGR 867
                +                                                   +SG 
Sbjct: 909  FEIPLAGGDLRARAPRVSLSDVGELLRVHLPRSDPFWSYADRLTSPGLGGQSLRGYLSGS 968

Query: 868  IDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT---------HIAQLSIYEKILKD 913
            ID +     Q   + +YKT+H      ++             +  Q  +Y  +L  
Sbjct: 969  IDVVLRLPQQRYLVVDYKTNHLGATAADYSVDRLTEAMLHSDYPLQALLYVVVLHR 1024


>gi|317178260|dbj|BAJ56049.1| helicase [Helicobacter pylori F16]
          Length = 947

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 130/865 (15%), Positives = 265/865 (30%), Gaps = 167/865 (19%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T  +        KK  D    L+   +E      R+          A       
Sbjct: 243 FLNSSLTWLEKKSEYRYFKKFKDEIPTLESECEEIENDLRRYYEA----RESALFKKFPK 298

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D  I HILIDE QDTSL
Sbjct: 299 FIQLYDKATSKIQALDFDAIKDKVHALLNGYEEMPAEFFYFRLDSRIAHILIDEFQDTSL 358

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY F G+                 +
Sbjct: 359 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYGFRGS-----------FSSLFES 407

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    LP + RS+  I+  V+ +F         +       +  S++  + G V++
Sbjct: 408 VSKDFYHDNLPFNHRSSPLIINYVNTIFKKAYQNSPTAYWEQKYPKASSNKHARDGYVKV 467

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 468 SLVA-------------------------DERELLLEQILQEAKNLLEH----------R 492

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L     D   I    +   +  + S   + +        I            
Sbjct: 493 IDPKDITLLCATNDDALEIKNYLQKNLSAIRPSTESSAKLSQFVESKIIKNALEYALAEE 552

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   +     + E+                         
Sbjct: 553 PYKPFYKHSVLK--LAGYLHDDAIALAGFNPKKES------------------------- 585

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       F   ++                    L E      +         ++ 
Sbjct: 586 ---------VAGFVWKVIE-------------------LFELYGECAQICLELAVGCEDA 617

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              LE+       +  A   +V  MT+H +KG++ P V + +   +  ++    +     
Sbjct: 618 NEFLEKLEAKEIASFKAEGAQV--MTIHKSKGMQFPYVIVCERLGKPKTNNS-NQFLEEY 674

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           S  +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 675 SGTELTRLYYRMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIVVAKDKD 734

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             + K   ++            E  +   + +S               PE+  ++     
Sbjct: 735 QKKDKKESKSKGMREKLDLAPLEEGEIAPVISS----------QKEPSPESVVIKPHAYG 784

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
           +Q+ + ++                    PS  +            D +  N G+ +HK L
Sbjct: 785 EQVQEMEEE-------------------PSDYEKNN---------DQEAINFGIALHKGL 816

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
           +       +  K  +  Y   +   +   +Y+ L  S+     +  +           ++
Sbjct: 817 EY--QYAYNIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQALFKN-----LA 868

Query: 851 VSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
           + G++    + ++   RID +   +   +++ +YK+  +          +H AQ+S Y  
Sbjct: 869 LKGEVAFLFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSHKAQVSHYAA 919

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFI 934
            L+   P+  +   +IY +  ++  
Sbjct: 920 FLQTQAPHFKIQAGIIY-AHKRLLE 943


>gi|282853718|ref|ZP_06263055.1| UvrD/REP helicase [Propionibacterium acnes J139]
 gi|282583171|gb|EFB88551.1| UvrD/REP helicase [Propionibacterium acnes J139]
          Length = 1085

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 107/951 (11%), Positives = 267/951 (28%), Gaps = 101/951 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 75  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 134

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 135 MRELLAARDISDWPEELRTCAGTAQFASDVRVMAARLRQEGCDPQDLTEAGTASGVPE-- 192

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 193 ---WRMLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 245

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 246 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 295

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ + +        S          S+  G
Sbjct: 296 FP--------DVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSSRLRRHANHSTSTEAG 347

Query: 304 ------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT----I 353
                      +L  ++             +W S            ++A  +A      +
Sbjct: 348 TVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIPVL 407

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD--TPLITFLTRFLKNDYKISVVGNDRFI 411
            +              ++ A ++ V +          +  L          SV+      
Sbjct: 408 RSRDEHALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLETW 467

Query: 412 LTDHLAIKDLMALGRFI-LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYE 468
                 +    AL + +        +             +    ++ T            
Sbjct: 468 CRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSGDAITAELDTACEVYSVPPSLR 527

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
            + +       + Q     +          +    +     A   R++ ++   +     
Sbjct: 528 ALAQPLAVMTQRVQRAADLLRS--GATCHEALWALWQGSSWASSLRRRAVA-GDSTANRD 584

Query: 529 LDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKG 582
           LD   +     E     +       L      EQ P    R    + + V ++T H  KG
Sbjct: 585 LDGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVSVVTAHRIKG 644

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            E  VV +       +   +     +        G+      S                 
Sbjct: 645 REFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------E 688

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ--------RTWYDMVYDSFHNDER 694
                 RLL V  +RA  QL++C   +    K+ +             D +  +   +  
Sbjct: 689 NLRAETRLLLVASSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLSFASLTELV 748

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            +  ++    ++   +  E      +    E          +     +   P ++D++  
Sbjct: 749 GELRRVIADESESPGVRTEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQDDMDGE 808

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL-LQVIFTLPEHKRKNFI 805
             L+ S +           ++     +         G ++H++  + +      K    +
Sbjct: 809 IELSASHVGELLTCPRRWFMTRRAGASSGSAFRASIGSLVHRICAENMDQWSLPKALAEL 868

Query: 806 TSY---CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
            +       +A+   + E  +   ++ R   +  +         +EV V G I  P    
Sbjct: 869 EAAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTA 926

Query: 863 IISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 927 RVRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 974


>gi|51891749|ref|YP_074440.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51855438|dbj|BAD39596.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 672

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/600 (14%), Positives = 175/600 (29%), Gaps = 115/600 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            E +++   +  ++R        F+           L   Y EAK +  +LDF+DL+   
Sbjct: 183 DEAVQEVLADLSRLRAEPEPPAGFRPRSLPPAEFDGLLRRYAEAKAEQGLLDFDDLLHEA 242

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             LL+       +     +   HIL+DE QDT+ +Q+ ++R L E            R L
Sbjct: 243 LALLRG---RPELLEGYRRRFGHILVDEFQDTNPVQFALVRLLAE----------PGRNL 289

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ Q+IY + GA P+ +L    +            + + L ++ R  A ++   ++
Sbjct: 290 CVVGDDDQAIYGWRGATPEFLLSFGDLYP--------GAAQVTLAVNHRCPAPVVEAANR 341

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           + +      G           R  R        L      +                   
Sbjct: 342 LVAHNVRRLGKVM--------RPVRRSGPPVRLLTPADTVEE------------------ 375

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                        A  I+ ++                    V+ R  +   ++  +    
Sbjct: 376 -------------AEVIARLVREA---------GAPLSHWAVIYRTNQQAHVLAEVL--- 410

Query: 397 KNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            +   I          L     ++D++A  R      D ++ + +L  P    +     +
Sbjct: 411 -SREGIPYRTLGGLPNLYRRWPVQDVLAYLRAAA--GDRMALLPVLNRPNRYLARAVAEE 467

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                  T+              +     ++ + + +      +  +    +        
Sbjct: 468 AARIAGATDGDLLAAIGRTGLLRTWQLRPVEELEDHLRALGRMTAPEAIAYVRSVIGY-D 526

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            ++  +        DE L      ++ +   L                  +     V ++
Sbjct: 527 DYLQEYAARAGGRPDELLGLLAEVQRTAPRLLLPAYLGHVAAFSAQADRKAPEGQAVTLV 586

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T H AKGLE P V +     ++  H+    +                             
Sbjct: 587 TCHRAKGLEFPRVVVAGAVDRLLPHRSNPDI----------------------------- 617

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    EE  RL+YV +TRA ++L I    +    +        +++  +       
Sbjct: 618 ---------EEERRLMYVAVTRAREELWISAPRSYEGRECRPSPFVAELLGTAAFRAAEA 668


>gi|298292379|ref|YP_003694318.1| UvrD/REP helicase [Starkeya novella DSM 506]
 gi|296928890|gb|ADH89699.1| UvrD/REP helicase [Starkeya novella DSM 506]
          Length = 690

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 125/760 (16%), Positives = 224/760 (29%), Gaps = 160/760 (21%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKA--------QTLQ 54
            R    +    E I   +       +++   +       G   +   A         T+ 
Sbjct: 71  RRAAAEMTRRVERIAAHVLGPNAAVLTEGLTFAGTFHGVGARLLRDYAVQIGLDPNFTIH 130

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQK----NIITQEINKKSPDLKEKLKKSQDEFIKI 110
               +  +         F  T+K  P K     I ++ +N + P L+E + ++       
Sbjct: 131 DREDSADLINLVRHELGFSRTEKRFPAKGTLIAIYSRAVNAEQP-LEEVIGRAFPWCAGW 189

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
                                 L A Y EAK++  VLD++DL++    ++ +  ++A   
Sbjct: 190 NAELKA----------------LFAAYVEAKQRQNVLDYDDLLLYWAQMVGEPSIAAD-- 231

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +    +H+LIDE QDT+ +Q  ++                 R L  VGD+ QSIYSF 
Sbjct: 232 --LAGRFDHVLIDEYQDTNRLQASIL----------LGLKPDGRGLTVVGDDAQSIYSFR 279

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            A  + +L        RA         + L  ++RS+  IL   + V          +  
Sbjct: 280 AATVRNILDFPGHFSPRAD-------TVMLEQNYRSSQPILAAANAVIDFAAERYAKNLW 332

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           S      R   +     ++                                    A  +A
Sbjct: 333 SDRASTERPILVSVRDEIE-----------------------------------QANFVA 357

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                 I  K   VL R    +  +            I  V     
Sbjct: 358 TRILENREDG----------IALKSQAVLFRAAHHSGPLEVEL----TRRNIPFVKFGGL 403

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
              D   +KD++A  RF+ +  D ++   +L+  L         +I  +   ++ +   +
Sbjct: 404 KFLDSAHVKDVLAALRFVENPRDRVAGFRVLR-LLDGLGPATAGRILDEVATSDALVPAL 462

Query: 471 QKFANCGISK--FQHVIKYIHELIHIAQFCSPH-DFFTLILGAKKGRQQFISRFGNEVID 527
           + FA    +   +   +  I EL   A       D               + R   +   
Sbjct: 463 EGFAPPARTAQDWPAFLAMISELKGKAAGWPGELDLVWQWYEP------LLERLHEDAAS 516

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGL 583
              + +          Y+S +  ++EL   PP    A +     + + V + T+H+AKG 
Sbjct: 517 RQADLVQLAQ--IAGGYASRERFLTELTLDPPDATSAEAGPPHLDEDYVILSTIHSAKGQ 574

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   VF+++                                                K  
Sbjct: 575 EWKKVFVLNVVDGCIPIDLGVGT----------------------------------KDE 600

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            EE  RLLYV MTRA D L +             QR +               + +    
Sbjct: 601 IEEERRLLYVAMTRAKDSLHLM----------VPQRFFTHGQAARGDRHVYAARTRFIPP 650

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
              + + A  W    P   P +R     ++    ++    
Sbjct: 651 TILNRFAATSWPPAAP-AEPGQRPVDTPRIDIGARMRAMW 689


>gi|224539034|ref|ZP_03679573.1| hypothetical protein BACCELL_03934 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519362|gb|EEF88467.1| hypothetical protein BACCELL_03934 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 975

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 124/787 (15%), Positives = 245/787 (31%), Gaps = 125/787 (15%)

Query: 140 AKKKNCVLDFEDLIINTNDLLK--KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
               +  +DF  +I    + L+    ++++ +         H+++DE QD ++ Q  +I 
Sbjct: 187 RLGSDQYIDFSLMIRKAVEALESDNNEINSALAET-----KHLMVDEYQDVNISQERLIN 241

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L +              +F VGD+ Q+IY + GA+ + ++   +             S+
Sbjct: 242 GLYKRMES----------VFVVGDDDQAIYGWRGADVRNIVEFDQR--------HHNCSV 283

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
             L  +FRST  I++  D+          LS           S          W      
Sbjct: 284 HTLSTNFRSTETIVSASDRFIQ-----LELSTARINKSPQAHSNGNIQQFGNFWF----- 333

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                                 ++    A  I   I+++IG   +  NG++R +   DI 
Sbjct: 334 ----------------------NTRVEEANWITTRINDLIGVKYVEGNGEERGLTYSDIA 371

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +L+R  +              +  I  +      + + L  + L      +         
Sbjct: 372 ILMRSVQGRSQYHRDFTNALQNAGIPYLIESEGSVFERLYARTLRDAMELLRFPG----I 427

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
                +  F  +   +F           + ++  +         + V             
Sbjct: 428 SRTEATTFFQNNILPVFPNANLSRFLIILSDWNNQIHRPQGGARRKVY----------PQ 477

Query: 498 CSPHDFFTLI---LGAKKGRQQFISRFGNEVIDVLD-EFLNFTLRNEQNSYSSLQELISE 553
              HDF             ++Q +   G     +LD E +  ++ +     + L  L + 
Sbjct: 478 MLVHDFLEAFNVSTTHFTNKEQVMRDLGVFSGIILDIEKVFVSIDSSYRYQTILNFLQNV 537

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
            E    T      +  + V I TVH  KGLE PVVFLVD   Q F   + K    +P+  
Sbjct: 538 AETGYDTSLVELMSRPDAVTISTVHKMKGLEYPVVFLVDVVQQRFPGSNRKYNGWLPT-- 595

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                          N I   L + L +S      RL Y  +TR+   L +   +     
Sbjct: 596 ---------------NLIQDALSRGLYQSNNAGEARLFYTALTRSERFLYVTGSAIHEGL 640

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            ++ + + Y +   + ++        +                +     P  R +     
Sbjct: 641 ARAKRPSPYKLRLTNLNHSGITTDETI-------------LPENVERIEPKARIDEESMP 687

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
               +I   L  P+K    + Y  +P+  +  G       L+ +   NR   +H+L    
Sbjct: 688 TSFTEIKDYLECPMKYRFRKIYGFSPAVPELFG-----YGLTTHTAINR---LHQLYPES 739

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE----V 849
               E  ++     +  K+       + +           +  +    + D  ++     
Sbjct: 740 APTREEAQEIASDVFHLKHVFPSRNSDGEGPYERAKS--ASKKLVGNYANDYPNDFIQSR 797

Query: 850 SVSGKINCPKKDIIISGRIDQISISQ--QNIF---IFEYKT-HHHVPQEIEHIPYTHIAQ 903
           S+  +        +I+G ID +       NI    + ++K+      Q I         Q
Sbjct: 798 SLEQRFEIKAGKALITGAIDLLLKEDTNGNILDAKVVDFKSMDFPKNQNIPFFWINMALQ 857

Query: 904 LSIYEKI 910
           + +Y   
Sbjct: 858 VQLYAHA 864


>gi|315585943|gb|ADU40324.1| helicase [Helicobacter pylori 35A]
          Length = 949

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 130/866 (15%), Positives = 261/866 (30%), Gaps = 169/866 (19%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T  +        KK  D    L+   +E      R+          A       
Sbjct: 245 FLNSSLTWLEKKSEYRYFKKFKDEIPTLESECEEIENDLRRYYEA----RESALFKKFPK 300

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D  I HILIDE QDTSL
Sbjct: 301 FIQLYDKATSKIQALDFDAIKDKVHALLNGYEEMPAEFFYFRLDSRIAHILIDEFQDTSL 360

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY F G+                 +
Sbjct: 361 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYGFRGS-----------FSSLFES 409

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    LP + RS+  I+  V+ +F         +       +  S++  + G V++
Sbjct: 410 VSKDFYHDNLPFNHRSSPLIINYVNTIFKKAYQNSPTAYWEQKYPKASSNKHARDGYVKV 469

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 470 SLVA-------------------------DERELLLEQILQEAKNLLEH----------R 494

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L     D   I    +   +  + S   + +        I            
Sbjct: 495 IDPKDITLLCATNDDALEIKNYLQKNLSAIRPSTESSAKLSQFVESKIIKNALEYALAEE 554

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   +     + E+                         
Sbjct: 555 PYKPFYKHSVLK--LAGYLHDDAIALAGFNPKKES------------------------- 587

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       F   ++                    L E      +         ++ 
Sbjct: 588 ---------VAGFVWKVME-------------------LFELYGECAQICLELAVGCEDA 619

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              LE+       +  A   +V  MT+H +KG++ P V + +   +  ++    +     
Sbjct: 620 NEFLEKLEAKEIASFKAEGAQV--MTIHKSKGMQFPYVIVCERLGKPKTNNS-NQFLEEY 676

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           S  +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 677 SGTELTRLYYRMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIVVAKDKD 736

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             + K   ++            E  +   + +S               PE+  ++     
Sbjct: 737 QKKDKKESKSKGMREKLDLAPLEEGEIAPVISS----------QKEPSPESVVIKPHAYG 786

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
           +Q+ + ++ P                                  +D +  N G+ +HK L
Sbjct: 787 EQVQEMEEEPSDYEKN----------------------------NDQEAINFGIALHKGL 818

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EV 849
           +          K  +  Y   +   +   +Y+ L  S+     +  +       +   EV
Sbjct: 819 EY--QYAYRIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQALFKNLALRGEV 875

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           +         + ++   RID +   +   +++ +YK+  +          +H AQ+S Y 
Sbjct: 876 AF------LFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSHKAQVSHYA 920

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFI 934
             L+   P+  +   +IY +  ++  
Sbjct: 921 AFLQTQAPHFKIQAGIIY-AHKRLLE 945


>gi|297192221|ref|ZP_06909619.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151257|gb|EDY64039.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 1190

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 111/787 (14%), Positives = 224/787 (28%), Gaps = 123/787 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLS 70
                +     L       I    +  +          A+ L++A          F  L 
Sbjct: 70  RISTYHAFAGQLLKDHGLRIGLEPTARLLADATRYQLAARVLREAPGPYPALTRSFPSLV 129

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S  L       ++++     K+     E L+  +   +   D     +  ++    L L 
Sbjct: 130 SDLLALDAELAEHLVPPGRLKEYDT--ELLRTLEGARLTNVDLRKVPEAAEARRELLDLT 187

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                 Y  AK++  +LDF D I  + +L L + +V   +R +       +L+DE QDTS
Sbjct: 188 L----RYRAAKRQRDLLDFGDQIALSAELALTRPEVGTVLRDE----FRVVLLDEYQDTS 239

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q  ++  L            +   + AVGD  Q+IY + GA    +            
Sbjct: 240 VAQRLLLSGLFG--------QGTGHAVTAVGDPCQAIYGWRGASVANLDDFPVHFP---H 288

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           + G+      L  + RS   +L + + +                       R    G   
Sbjct: 289 SDGRPADRYSLSENRRSGGRLLHLANGL-------------------ATPLRAMHEGVEA 329

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L                 +            + +     +A +I++++ T          
Sbjct: 330 LRP------------APGAERDGIVRCALLPTHAEEIEWLADSIAHLVRTGK-------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  +I VL R   D P I            + V       L     + DL+A+   + 
Sbjct: 370 --EPGEIAVLCRTAGDFPEIQGALVA----RDVPVEVVGLSGLLHLPEVADLVAMCEVLQ 423

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS---------- 479
               + S V +L  P +     D+  +  +                   +          
Sbjct: 424 DPGANASLVRILTGPRWRIGPRDLALLGRRARLLVHHASADDDPERRLAAAVEGTDPAEI 483

Query: 480 -----------------------------KFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                                        +F  +   + +L   +      D    +L  
Sbjct: 484 ISLADALDTFLESAGGEDDGLPFSAEARVRFARLAAELRDLR-RSLADPLMDVLHRVLST 542

Query: 511 KKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI---KR 563
                +  +          + L  FL+        +  ++L   +  L            
Sbjct: 543 TGLEVELSASPHALAARRRETLANFLDIAAGFAALDGEATLLAFLGFLRTAAQYEKGLDN 602

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGI 618
           A     N V+++T H +KGLE  VV +    ++ F +   ++       ++P        
Sbjct: 603 ALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAKHFPNDQAREAWTSQSKVLPHALRGDAA 662

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
            +   +S     +     + +K     E  RL YV  TR    L+   H    ++K+   
Sbjct: 663 TLPDVESWDAGGL-KAFKEAMKDHQHTEELRLGYVTFTRPRSLLLGSAHWWGPSQKRRRG 721

Query: 679 RTWY--DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
            + +   +          ++        + +       +  H    PL+     ++    
Sbjct: 722 PSAFLKALYDHCEQGHGEIEVWADEPEEDAENPALGTTTADHAWPLPLDPVSLARRRAAA 781

Query: 737 QKIPKKL 743
             +   L
Sbjct: 782 DTVLAHL 788



 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 64/246 (26%), Gaps = 20/246 (8%)

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
            + E            +   + +    +L   +   + +  P     ++   L        
Sbjct: 949  EREEALTPEEARAVASWDRDLDALAGELRRTRATVRDVLVPASLSASQLLRLAADPDGFA 1008

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
             +              RG   H  ++        + +         +     A E+    
Sbjct: 1009 QELARPMPRPPQPAARRGTRFHAWVE-------SRFEEMPLPMLGPDELPGGADEHDIAD 1061

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYK 884
                  L++    T  +    +               ++ GRID +  + +    I ++K
Sbjct: 1062 EQDLAALKDAFERTPYAR--RTPYRDEAPFQFTLAGRVVRGRIDAVYRTGEGTYEIVDWK 1119

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            T  +   +          QL++Y     + +  P  ++    ++V   ++          
Sbjct: 1120 TARNGVADP--------LQLAVYRLAWAEQHGIPLDAVTATFVFVRTGEIVHPDGLPDRA 1171

Query: 943  AFAEIS 948
                I 
Sbjct: 1172 GLERIL 1177


>gi|210135718|ref|YP_002302157.1| putative recombination protein RecB [Helicobacter pylori P12]
 gi|210133686|gb|ACJ08677.1| ATP-dependent nuclease subunit A [Helicobacter pylori P12]
          Length = 946

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 134/870 (15%), Positives = 261/870 (30%), Gaps = 178/870 (20%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T  K        KK  D    L+   +E      R+   +      A       
Sbjct: 243 FLNSSLTWLKKKGEYRDFKKLKDEIPTLESECEEIENDLKRYYEAREI----ALFKKFPK 298

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y +A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 299 FIQLYNKATSKIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSL 358

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY+F G+                 +
Sbjct: 359 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS-----------FSSLFES 407

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS   I+  V+ +F         +       +   ++    G V++
Sbjct: 408 VSKDFYHDNLEFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKTSQNKHATEGYVKV 467

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 468 SLVA-------------------------DERELLLEQILQEAQNLLEHH---------- 492

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L    KD   I    +   +  + S   + +        I            
Sbjct: 493 IDPKDITILCATNKDALEIKNYLQERLSAIRPSTESSAKLSQFVESKIIKNALEYALAEE 552

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   +     + E+V  ++ K                  
Sbjct: 553 PYKPFYKHSVLK--LAGYLHDDAIALPGFNPKKESVAGFVWK------------------ 592

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                           +        Q          D  D         E+    ++   
Sbjct: 593 -------------VMELFELYGEPAQICLELAVGCEDANDFL-------EKLEAKAIASF 632

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +                    +IMT+H +KG++ P V + +         H  ++    
Sbjct: 633 NA-----------------KGAQIMTIHKSKGMQFPYVIVCE-RLGNPKSNHSNQLLEEY 674

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           +  +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 675 NGAELMHLYYRMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIVVAKDKK 734

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            ++K++  +T ++ +  +   +  +  +                    P+  PL     I
Sbjct: 735 ESKKENKNKTMHEKLDLALLEEGEIMPV------------------ISPQKEPLITSTLI 776

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
           K     +++ +    P  +                         +D +  N G+ +HK L
Sbjct: 777 KPHAYGEQVQEIEEEPESDYEK---------------------NNDQEAINFGIALHKGL 815

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-MMTTAMSCDSYS-E 848
           +       +  K  +  Y   +   +        L     L EN   + T     +   E
Sbjct: 816 EY--QYAYNIPKQSVLEYLNYHHGFYGLDH--QALEESLELFENDMEIQTLFKNHALKGE 871

Query: 849 VSVSGKINCPKKDIIISG---RIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQL 904
            +            +  G   RID +   +   + + +YK+  +          +H AQ+
Sbjct: 872 AAF-----------LFQGVVSRIDVLLWDKGQNLCVLDYKSSQN-------YQQSHKAQV 913

Query: 905 SIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
           S Y + LK   P+  +   +IY +  ++  
Sbjct: 914 SHYAEFLKTQAPHFKIQAGIIY-AHKRLLE 942


>gi|217032966|ref|ZP_03438440.1| hypothetical protein HPB128_182g20 [Helicobacter pylori B128]
 gi|216945335|gb|EEC24009.1| hypothetical protein HPB128_182g20 [Helicobacter pylori B128]
          Length = 750

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 136/915 (14%), Positives = 292/915 (31%), Gaps = 173/915 (18%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
           +P  +    ++   L         ++  +T    ++     + F    +  LT      +
Sbjct: 2   IPIKKEPVFDEESFLEKLRSLNNQIQSIETASDRAKEAIKCDSFRGFLNSSLTWLEKKSE 61

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            I  +++  + P L+ + ++ +++  +  +   T        A           Y++A  
Sbjct: 62  YIYFKKLKDEIPTLESECEEIENDLKRYYEARET--------ALFKKFPKFIQLYDKATS 113

Query: 143 KNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL  ++++    
Sbjct: 114 KIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSLNDYKILAPFI 173

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           ++   G       R++F VGD KQSIY+F G+                 +  + F    L
Sbjct: 174 DEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS-----------FSSLFESVSKDFYHDNL 222

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             + RS   I+  V+ +F         +       +   ++    G V++          
Sbjct: 223 QFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKTSQNKHVTEGYVKVSLVA------ 276

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                  +L  ++     N++             I  KDI +L 
Sbjct: 277 -------------------DERELLLDQVLQEAQNLLDHH----------IDPKDITILC 307

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
              KD   I    +   +  + S   + +        I  +    R+ L++E    F   
Sbjct: 308 ATNKDALEIKNYLQENLSAIRPSTESSAKLSQFVESKI--IKNALRYALAEEPYKPFYKH 365

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
               L  +  DD+  +     + E+V  ++ K                            
Sbjct: 366 SVLKLAGYLHDDVIALAGFNPKKESVAGFVWK---------------------------- 397

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                 +        Q          D  D FL      E+    S+    +        
Sbjct: 398 ---IMELFELYGEPAQICLELAVGCEDA-DGFL------EKLEAKSIASFNA-------- 439

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                       +IMT+H +KG++ P V + +      +  H  ++       +   +  
Sbjct: 440 ---------KGAQIMTIHKSKGMQFPYVIVCE-RLGKPNSSHSNQLLEEYDGAELLRLYY 489

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
            +   +  +   +  +   + +   E   + YV  TRA   LI+       ++K+S  +T
Sbjct: 490 RMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIVVAKDKKESKKESKNKT 549

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
             + +      +  +  +                    P+  PL     IK         
Sbjct: 550 MREQLDLVPLEEGEIMPV------------------ISPQKEPLITSALIK--------- 582

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                        P+       + + + +     +D +  N G+ +HK L+       + 
Sbjct: 583 -------------PHAYGEQVQEIEEEPSDYEKNNDQEAINFGIALHKGLEY--QYAYNI 627

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
            K  +  Y   +   +   +Y+ L  S+     +  +       +       G+     +
Sbjct: 628 PKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAEIQALFKNHALK-----GEAAFLFE 681

Query: 861 DIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
            ++   RID +   +   + + +YK+  +          +H AQ+S Y + LK   P+  
Sbjct: 682 GVV--SRIDVLLWDKGQNLCVLDYKSSQN-------YQQSHKAQVSHYAEFLKTQAPHFK 732

Query: 920 LVCLLIYVSEPKVFI 934
           +   +IY +  ++  
Sbjct: 733 IQAGIIY-AHKRLLE 746


>gi|332173435|gb|AEE22689.1| exodeoxyribonuclease V, beta subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1315

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 108/728 (14%), Positives = 224/728 (30%), Gaps = 85/728 (11%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
           K  W         ++  +  + + G          +Q    +      F           
Sbjct: 222 KRWWLDNNVAEQIVDADLKANTKLGKA---DYIGKMQAFCLSDESRADFD---------- 268

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKS-QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
               +     ++        + L       F  +               SL    +++ +
Sbjct: 269 KDLWQVFSPAKVAGAMKKTSKSLAHLDFSRFETLGYLQQQCHEQLLLAYSLDALGHISRN 328

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLK---------KRD----VSAWIRYKIDQEINHILID 183
               K++  +L  +DL+   +  L            +        +   I +     LID
Sbjct: 329 LANNKQRLQLLSPDDLLSCLHRALTAQAQSGGQADPESQTTAQQSLAKAIQESYPAALID 388

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT  IQ+++ R +  + F   +         A+GD KQ+IY+F GA+    +  K +
Sbjct: 389 EFQDTDPIQFDIFRIIYTEQFSDIS-----PCWVAIGDPKQAIYAFRGADIHTYIAAKDL 443

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE-NAQGLSEDSTTTIRHRSSRI 302
                           L  ++RS   ++  V+ +F+  E             +       
Sbjct: 444 VDVE--------RQFTLGTNWRSQPSLVEGVNTLFTQSEAGFLFKDSIPFQAVASVEQET 495

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
           G     Q    +   H +  N Q   W           + + +A++ A+ I+  I     
Sbjct: 496 GLQVLGQSHNSLDVHHLTSENAQPIGW---------GEAQTAMAQQCAWRIAQFIHQGAT 546

Query: 363 FSNGKK-RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                  R I   D  VLVR R +   I      L     +  +   R  +       DL
Sbjct: 547 GEAKIMQRGIMPGDCCVLVRDRNEADTIKQALAEL----GVDSMFLARKSVFASQTAVDL 602

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            A+ + + +  +D      + S LF +    +  + ++        E+  +      + +
Sbjct: 603 YAIVQALANPSNDRYLRAAIASELFCYDAAALDALFSE--------EWQWQKLVEQFAYW 654

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
             + +    ++ +            ++   +  Q+ ++         L E L    +   
Sbjct: 655 HQLWQRHGLMMALNILMRHFSIAQRLVERYQDGQRRLTDL-----RHLVELLQVQSQLMS 709

Query: 542 NSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                L    + L +        +       N V+I+T HT+KGLE P+VF+       F
Sbjct: 710 GESQLLHWFQAHLAEPDNDNEGQQIRLETEQNLVQIITQHTSKGLEYPLVFIP------F 763

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
           + +  +    +   + D  +  ++           + +         E  RLLYV +TRA
Sbjct: 764 ASRCREMKEAIYHSDTDGLVIDFLG--------AEENLALADHERLAEDIRLLYVALTRA 815

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                I   +N+  ++K   +     +     +        +      D   + +   H 
Sbjct: 816 VHYCFIGLWNNSHPQRKKESQLMQTALGRILFDQGTSISDSVITQRLDDLSKSIDLGYHG 875

Query: 719 PENTPLER 726
            +    +R
Sbjct: 876 FKAQEAQR 883


>gi|169596392|ref|XP_001791620.1| hypothetical protein SNOG_00955 [Phaeosphaeria nodorum SN15]
 gi|160701299|gb|EAT92450.2| hypothetical protein SNOG_00955 [Phaeosphaeria nodorum SN15]
          Length = 974

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 100/608 (16%), Positives = 180/608 (29%), Gaps = 127/608 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + + YEE  K   +LD++DL++   +LLK+              I  +LIDE QDT+ 
Sbjct: 168 AMVYSSYEEHLKAANLLDYDDLLVRCVELLKRSPSCV-------STIQAVLIDEYQDTNN 220

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+E+++ L +          S R +  VGD  QSIYSF  AE K + R +    +    
Sbjct: 221 IQYELMKLLAQ----------STRRITIVGDPDQSIYSFRAAEIKNLFRMRDEFPESV-- 268

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I L  ++RS+  IL     V    E+    +  +T  +    +          
Sbjct: 269 ------VINLENNYRSSGCILNSALAVIEQDESRPQKALIATHVVGEAPT---------- 312

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                    L    SA I A+     I                +
Sbjct: 313 -------------------------LRHLVSAHIEAKWTVDEIIR-------TRTLAAGL 340

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +   D  +L+R  + +  +            +           D   IK ++   R +  
Sbjct: 341 LDYNDYAILLRSSQLSLQLERAL----AKAGVPYRMVAGIKFFDRAEIKIILDYLRVVSQ 396

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVY-----------EYIQKFANCGI 478
            E + +   ++  P     +  +  +  +   +  T++               K +    
Sbjct: 397 PEHNDAVARVINLPSRKVGDSTVKALLEEAEVKKVTLWKLVLDIAQGRIRSNCKVSTQAQ 456

Query: 479 SKFQHVIKYIHELIHIA-----QFCSPHDFFTLILGAKKGRQQFI---SRFGNEVIDVLD 530
              +  +  I            + C  +     IL                  +  D ++
Sbjct: 457 KGIEQFVNVILTSREKLLPTKGEHCDLYGLIGHILQKISFEAYLKQTHKENWKDRWDNVE 516

Query: 531 EFLNFTLRN---------------------EQNSYSSLQELISELEQYPPTIKRAHSANH 569
           E +    +                      EQ   ++   L   L     +     +   
Sbjct: 517 ELVAQATQMATALASGEEITDDALPIVEGIEQRQDTAADVLSKFLANVTLSSLADQNGGE 576

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             +V I T+H AKGLE PVVFL         H            +D+    +++  +   
Sbjct: 577 VEQVTISTIHAAKGLEWPVVFLPAMYDGSIPHSRA-------DDHDEERRLLYVGMTHL- 628

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                      +     E      VG+ R  D L          +  S   +W D     
Sbjct: 629 ------AKILRRPCPTAEDIETARVGLERLEDDLYPATRDEIDGDDPSWGTSWDDKFDKF 682

Query: 689 FHNDERVK 696
             + E  +
Sbjct: 683 GPSSEAAQ 690


>gi|297380712|gb|ADI35599.1| helicase [Helicobacter pylori v225d]
          Length = 949

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 131/866 (15%), Positives = 262/866 (30%), Gaps = 169/866 (19%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T  +        KK  D    L+   +E      R+   K      A       
Sbjct: 245 FLNSSLTWLERKSEYRYFKKFKDEIPTLESECEEIENDLKRYYEAKE----SALFKKFPK 300

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 301 FIQLYDKATSKIQALDFDAIKDKVHALLNGYEEMPAEFFYFRLDSKIVHILIDEFQDTSL 360

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY F G+                 +
Sbjct: 361 NDYKILVPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYGFRGS-----------FSSLFES 409

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS+  I+  V+ +F         +       +  S++  + G V++
Sbjct: 410 VSKDFYHDNLQFNHRSSPLIINYVNTIFKKAYQNSPTAYLEQKYPKASSNKHARDGYVKV 469

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 470 SLVA-------------------------DERELLLEQILQETKNLLEH----------R 494

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L     D   I    +   +  + S   + +        I            
Sbjct: 495 IDPKDITLLCATNDDALEIKNYLQQNLSAIRPSTESSAKLSQFVESKIIKNALEYALAEE 554

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   +     + E+V  ++ K                  
Sbjct: 555 PYKPFYKHSVLK--LAGYLHDDAIALAGFNPKKESVAGFVWK------------------ 594

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                           +        Q          D  +EFL      E          
Sbjct: 595 -------------VMELFELYGECAQICLELAVGCEDA-NEFLEKLEAKE---------- 630

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              +  +               +IMT+H +KG++ P V + +   +        +     
Sbjct: 631 ---IASFNLE----------GAQIMTIHKSKGMQFPYVIVCERLGKPR-SNSSNQFLEEY 676

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 677 DGTELTRLYYRMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIV------ 730

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
                         V       +  K+ K      K + +  E     P  +  +     
Sbjct: 731 --------------VAKDKDQKKDKKESKNKGMHEKLDLVPLEEGAIAPVISSQKEPSIP 776

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
             ++      +++                   + + + +     +D +  N G+ +HK L
Sbjct: 777 SVVIKPHAYGEQVQ------------------EIEEEPSDYEKNNDQEAINFGIALHKGL 818

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EV 849
           +       +  K  +  Y   +   +   +Y+ L  S+     +  + T     +   EV
Sbjct: 819 EY--QYAYNIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQTLFKNLTLRGEV 875

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           +         + ++   RID +   +   +++ +YK+  +          +H AQ+S Y 
Sbjct: 876 AF------LFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSHKAQVSHYA 920

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFI 934
             L+   P+  +   +IY +  ++  
Sbjct: 921 AFLQTQAPHFKIQAGIIY-AHKRLLE 945


>gi|260494475|ref|ZP_05814605.1| exodeoxyribonuclease V beta subunit [Fusobacterium sp. 3_1_33]
 gi|260197637|gb|EEW95154.1| exodeoxyribonuclease V beta subunit [Fusobacterium sp. 3_1_33]
          Length = 1066

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 134/867 (15%), Positives = 285/867 (32%), Gaps = 133/867 (15%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            N + +  + +  +      +   E   +        +         L+  +   Y+  K 
Sbjct: 305  NKLKKASDAEHKEYINARHEELREI--LSKEIFNEVLIPYEEKIFELSSEIYNLYDSFKI 362

Query: 143  KNCVLDFEDLIINTN-------DLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWE 194
            ++    F D+ I T        + L+  +    I ++ +D  I  I IDE QDTS++QW+
Sbjct: 363  RDKKFTFSDIAIYTYMAIFNKNNALRDENGLTDIFFETLDMNIEAIFIDEFQDTSILQWK 422

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++   T+            +++  VGDEKQSIY +   E +     + I + +       
Sbjct: 423  ILYEFTK----------KAKSVICVGDEKQSIYGWRDGEKRLFENLETILEAKED----- 467

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                 L  S+RS  +I++  ++ F   E                         ++ W+  
Sbjct: 468  ----SLGKSYRSDRNIVSYCNQFFKAIEK------------------------IEDWKFP 499

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
             S+ +S+ +   ++          E                 +  +TI     K+     
Sbjct: 500  TSEVNSKNDGYVKAICIKDLQDKMEDEEQ----------KKELNINTILLQELKKFYPYD 549

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            ++ ++ R   +   I  L    K    I  + N+   ++++  I +   L ++++  E++
Sbjct: 550  NVAIIARTNAELSEIANLLEDKK----IPYILNNEKNISEYSGIFECFELLKYLV-YENE 604

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETV--YEYIQKFANCGISKFQHVIKYIHELI 492
            L+    + SPL NF  D+I  +   + E  +   +     F N    K    ++ I  L 
Sbjct: 605  LALFNFISSPLSNFGTDEIEILLKNKKELFSYINFSQDNDFINSLDKKIIRFLEKIVFLK 664

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
               +  +  D    I+   +    F      +    + +F   T          L+ L  
Sbjct: 665  KNYKNFTVQDLIFEIIKKFQFIDYFNKDNEVK---NIYDFYLLTNYYSSI----LELLND 717

Query: 553  ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
               +    I    ++    V ++T+H +KGLE    F++  G +  +        +    
Sbjct: 718  Y--KENKLILSDTNSEKKGVELVTIHKSKGLEFKTTFIIKNGKKSKTDDIDFLFEMNDKY 775

Query: 613  NDDPGIPIWIPQ-SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            ++                    + I++  K  +EE     YV +TR  + LI+       
Sbjct: 776  DETVFSLFCKKGYKSILETCFEERIENYDKKIKEEEINNFYVALTRPKNNLIVIYEDRLF 835

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
             EK   +           + ++   +  + N     +     +S  +  N    +E    
Sbjct: 836  EEKSLKE----------INLEDISFEKSVINDFFDCKIGELSFSEKNSNNEDTAKENLES 885

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
             L++ Q          + +            +     + + LL   +    G+++H   +
Sbjct: 886  DLLNSQPYFISSIYENEKES-----------EKIEINDSKFLLETEEKRMIGILVHYFFE 934

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSCD---SY 846
             +    + + +   T    K    +  ++   +L   +I   L         S      Y
Sbjct: 935  NLKYGTDEEVEFSKTLCYKKYLSYFGEEKLNKILSKENIGMFLTKD--KEIFSKKWDYIY 992

Query: 847  SEVSVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHI 901
            SE       +  +K      RID++ I         I+I ++KT                
Sbjct: 993  SEY---VLYDYEEKKEY---RIDRLMIKDNGDGTGEIYIVDFKTGGKN-----------Q 1035

Query: 902  AQLSIYEKILKDSYPN---KSLVCLLI 925
             QL  Y  +LK ++       +    +
Sbjct: 1036 NQLDTYRDVLKKNFEELQKYEIRTKFL 1062


>gi|293376027|ref|ZP_06622280.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
 gi|292645328|gb|EFF63385.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
          Length = 726

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 101/574 (17%), Positives = 192/574 (33%), Gaps = 116/574 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YE  K+   +LD++DL+     +LK  D   ++         HI IDE QDTS I
Sbjct: 183 QLYKKYEAFKESRYLLDYDDLLTTAFSILKHHD---YLLNFYQTRYTHIQIDEAQDTSKI 239

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E+I+ +           S    +F VGD+ QSIY+F GA PK++L  K          
Sbjct: 240 QYELIKLIA----------SRHHNIFLVGDDDQSIYAFRGAYPKQLLTFKETF------- 282

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            ++  I+ +  +FRSTA I++   +     ++    +  +                    
Sbjct: 283 -KEARILYMNQNFRSTASIVSTSSQFIQHNKSRYKKTIQTQNETGMSP------------ 329

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                               ++++ I+ +   + +         
Sbjct: 330 --------------------------TLHHFQTEQEQLSFLITTLKQAEDL--------- 354

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILS 430
              D+ +L R+                 ++I     +       H  ++D+ A+     S
Sbjct: 355 --NDVAILYRQNVSALP----LIEQFERHQIPFKLQEGKLSFFYHPIVRDIKAIITLSRS 408

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                SF  + K    + +        T+    + +   +   +     K +   + + +
Sbjct: 409 PNHLESFQRVAKILYLSATTQHQVTSQTESGYLDYLTRLVTFNSTYQREKVRLFKQNLMK 468

Query: 491 L------IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           L        +A   +  D+ + ++     + +   R   + + VL+              
Sbjct: 469 LPSLPCNRMMAFILNTLDYESYLIKKGFLKDEKGERLYTQGMAVLETLKMIAKD-----V 523

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            S +  +  LE     I    +     V ++T H +KGLE   VFL+D  + +   +   
Sbjct: 524 DSHEAFLERLEHLRL-ISEQSTTQAKGVNLLTFHASKGLEFKTVFLIDCMNGITPPQTA- 581

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                          I   +S+  ++              EE  RL YV MTRA +QL +
Sbjct: 582 ---------------IIEAKSQIFDHY-------------EEERRLFYVAMTRAKEQLTL 613

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
              +   N   S    + ++       DE  K +
Sbjct: 614 LSVAKKHNLLFSRSNFYKEVSKILNPIDEEPKPV 647


>gi|188528332|ref|YP_001911019.1| putative recombination protein RecB [Helicobacter pylori Shi470]
 gi|188144572|gb|ACD48989.1| helicase [Helicobacter pylori Shi470]
          Length = 949

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 134/916 (14%), Positives = 277/916 (30%), Gaps = 173/916 (18%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
            P  +    ++   L         ++  +T    ++T    + F    +  LT      +
Sbjct: 199 DPNKKEPAFDEESFLEKLRSLNQQIQSVETASDTAKTAIKCDDFRGFLNSSLTWLEKKSE 258

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
               +++  + P L+ + ++ +++  +  +            A           Y++A  
Sbjct: 259 YRSFKKLKDEIPTLESECEEIENDLKRYYEA--------KESALFKKFPKFIQLYDKATS 310

Query: 143 KNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           K   LDF+ +    + LL   +   + +  +++D  I HILIDE QDTSL  ++++    
Sbjct: 311 KIQALDFDAIKDKVHALLNGYEEMPAEFFYFRLDSRIAHILIDEFQDTSLNDYKILAPFI 370

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           ++   G       R++F VGD KQSIY F G+                 +  ++F    L
Sbjct: 371 DEIKAGIGQAKWHRSVFFVGDVKQSIYGFRGS-----------FSSLFESVSKEFYHDNL 419

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             + RS+  I+  V+ +F         +       +  S++  + G V++          
Sbjct: 420 QFNHRSSPLIINYVNTIFKKAYQNSPTAYLEQKYPKASSNKHARDGYVKVSLVA------ 473

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                  +L  +I     N++             I  KDI +L 
Sbjct: 474 -------------------DGRELLLEQILQEAKNLLEH----------RIDPKDITLLC 504

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
               D   I    +   +  + S   + +        I                     +
Sbjct: 505 ATNDDALEIKNYLQENLSAIRPSTESSAKLSQFVESKIIKNALEYALAEEPYKPFYKHSV 564

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           LK  L  +  DD   +     + E+V  ++ K                            
Sbjct: 565 LK--LAGYLHDDAIALAGFNPKKESVAGFVWK---------------------------- 594

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                 +        Q          D  +EFL      E    +S     +        
Sbjct: 595 ---VMELFELYGECAQICLELAVGCEDA-NEFLEKL---EAKEIASFNAKGA-------- 639

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                       +IMT+H +KG++ P V + +            +     S  +   +  
Sbjct: 640 ------------QIMTIHKSKGMQFPYVIVCE-RLGKPKSNSSNQFLEEYSGTELLHLYY 686

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
            +   +  +   +  +   + +   E   + YV  TRA   LI+        + K   ++
Sbjct: 687 RMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIVVAKDKDQKKDKKESKS 746

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                       E  +   + +S  +    +     H       E EE            
Sbjct: 747 KGMREKLDLLPLEEGEIAPVISSQKEPLIASVVIKPHAYGEQVQEIEEE----------- 795

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                             PS  +            D +  N G+ +HK L+       + 
Sbjct: 796 ------------------PSDYEKNN---------DQEAINFGIALHKGLEY--QYAYNI 826

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EVSVSGKINCPK 859
            K  +  Y   +   +   +Y+ L  S+     +  +       +   EV+         
Sbjct: 827 PKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQALFKNLALRGEVAF------LF 879

Query: 860 KDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
           + ++   RID +   +   +++ +YK+  +          +H AQ+S Y   L+   P+ 
Sbjct: 880 EGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSHKAQVSHYAAFLQTQAPHF 930

Query: 919 SLVCLLIYVSEPKVFI 934
            +   +IY +  ++  
Sbjct: 931 KIQAGIIY-AHKRLLE 945


>gi|151945237|gb|EDN63486.1| DNA helicase [Saccharomyces cerevisiae YJM789]
          Length = 1174

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 97/623 (15%), Positives = 181/623 (29%), Gaps = 139/623 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               Y    Y+    K   LDF+DL++ T  LL         R ++   I H+L+DE QD
Sbjct: 198 AALGYFYQIYQSELSKKNTLDFDDLLMYTFRLLT--------RVRVLSNIKHVLVDEFQD 249

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ +++      F   K  H   R +  VGD  QSIY+F  A     L   R     
Sbjct: 250 TNGIQLDLM------FLFAKGNHHLSRGMTIVGDPDQSIYAFRNALAHNFLEMGRKCPIE 303

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            +        I L  ++RS+  IL   + + +        ++        R+        
Sbjct: 304 YS-------TIILVENYRSSQKILNTSEILITQQ------NKGRQNRAPLRAQFDLDFPP 350

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V +                                          +  ++     +    
Sbjct: 351 VYMNFPAYFLEAPSL------------------------------VRELL-----YLKAL 375

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             +    D  +LVR+R+    I         +++I           D    + ++ L + 
Sbjct: 376 PNLFTFNDFAILVRQRRQIKRIESAL----IEHRIPYKIIRGHSFWDSKETRAMLNLLKL 431

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------ETETVYEYIQKFAN 475
           I S  D  + +  L  P          KI                 +  +  + +     
Sbjct: 432 IFSPNDKHAILASLLYPARGLGPATGEKIKNALDTLATDVSCFQILKDISSKKIMLDIPT 491

Query: 476 CGISKFQHVIKYIHE---LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE- 531
            G S     I  I     L+         D F  +      + +++ + G +  D L++ 
Sbjct: 492 KGRSVIADFISMIENCQLLLQSTLLGGLSDLFDKLYELSGLKYEYLYKDGKKKNDQLEKS 551

Query: 532 ------------------FLNFTLRNEQNS------------------------YSSLQE 549
                             FL    ++E +                            L+ 
Sbjct: 552 EPNLLNARHKNIELLKNYFLALLSKSESSDKEKNEVIKAETDEAEPIENKVITPKEFLRN 611

Query: 550 LISELEQYPPTIKRAHS----------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             + L  +    +   S            +  V I T+H AKGLE PVVF+      +  
Sbjct: 612 FFNSLSLHSDAAEEEESESNKDAKIKREKNGFVTISTIHGAKGLEWPVVFIPGCEEGIIP 671

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      ++         ++  ++           + + +E  R+ +V  TRA 
Sbjct: 672 -----CVFNDDKKDESEEDEEEDQENSKKDASPKKTRVLSVEDSIDEERRMFFVAQTRAK 726

Query: 660 DQLIICKHSNTSNEKKSNQRTWY 682
             L +       +  +    + +
Sbjct: 727 YLLYLSNTVTVEDVDRPRIASRF 749


>gi|167538036|ref|XP_001750684.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770818|gb|EDQ84497.1| predicted protein [Monosiga brevicollis MX1]
          Length = 675

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 85/539 (15%), Positives = 173/539 (32%), Gaps = 87/539 (16%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           L    D      DR  T      TLA           Y+E  ++   LDF+D ++N +  
Sbjct: 9   LSCEIDRLEAKSDRSKTEH---RTLAQYRSTLPFYERYKEHCQRQNWLDFDDQLLNCDKY 65

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L++                H+L+DE QDT+LIQ+ + R L  D             LF V
Sbjct: 66  LEQNSQIKP--------FKHVLVDEFQDTNLIQYTMARRLAAD-----------GNLFVV 106

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYS+ GA+P   +R ++               IEL  ++RST  IL     +  
Sbjct: 107 GDPNQAIYSWCGAQPNIFVRIQKDYA-------SNVQQIELRKNYRSTKAILKFSSTLIC 159

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             + +   S+  +   +  +   G    +  +  +  +                      
Sbjct: 160 QQQLSSDASQSDSQGTKQATQEQGPDVCLTTYPSLQEELSG------------------- 200

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                        I  +       +N  K  ++  D  +L+R       +    +     
Sbjct: 201 -------------IVQIFSQ---TANRAKTSLRYSDFAILLRTNATLCNVEQELK----I 240

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQ-EDDLSFVCMLKSPLFNFSEDDIFKICT 458
           + +      +        + DL+A  R I  + +DD +F  +   P        + K+  
Sbjct: 241 HHLPYRLAGKTGPFQSQEVGDLLAYLRLINDRSDDDDAFKRICNRPSRGIGVQTLNKLDN 300

Query: 459 -QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
             + +  +++             F  +I  +     +  F    ++  +++   K  +  
Sbjct: 301 LAKEQKTSLFSAAATSQLKPAKSFADLIAELRG--RLGNFKELSEYIQMVIKEIKFEEHV 358

Query: 518 -----ISRFGNEVIDV----LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH--- 565
                 ++  +E  +       + +   +    ++     +                   
Sbjct: 359 KKTCKAAKTDDEHGENDFTRRWKNVELLIDCATSTQQQQCQQHGAKASDDVERSIQDLLI 418

Query: 566 ---SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                  + + + TVH AKGLE  VV + D     + H + +       ++++  +   
Sbjct: 419 NFVERYSDGITVSTVHKAKGLEWAVVAVPDVNDHNYPHINTQHDGDDAGVDEERRLLYQ 477


>gi|227874457|ref|ZP_03992633.1| possible ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
 gi|227839685|gb|EEJ50139.1| possible ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268]
          Length = 622

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 123/664 (18%), Positives = 215/664 (32%), Gaps = 124/664 (18%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
             +     K    +      TI     +L +       E+  +L        ++  +K I
Sbjct: 78  EMEERFFRKMGIRAGRPRFSTIHALCFSLLREDLGYKKEDLVNLYEKMDWLSQYYLEKGI 137

Query: 85  ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
           + +E+ +  P L  ++   +    + R  +   +  +  LA           YEE++KK 
Sbjct: 138 LREEVQELLPGLIAQISYFKSIGERERIAYLQKEKQEDFLALYHF-------YEESRKKR 190

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             LDFEDL++    +L +      +        +HIL+DE QD SL+Q+E+I+SL +   
Sbjct: 191 GKLDFEDLLLEVLRILME---KGDLAKAWQSRFSHILVDEFQDLSLVQYEIIKSLAK--- 244

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  SP  LF VGDE QSIY F GA P  +L   R               I L  +F
Sbjct: 245 -------SPNALFVVGDEDQSIYGFRGASPGILLSFTRDYPN--------CERIFLSDNF 289

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS  +I+ +  ++    +                  R G  G  + +     + +     
Sbjct: 290 RSYREIVELSKRLIGKNKERFQKKLQG---------RQGSGGKAKYYALATGKEE----- 335

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                                A+ +   I                     ++ +L R RK
Sbjct: 336 ---------------------AKLLVQHIEEAKEEGCPLE----------EVAILCRSRK 364

Query: 385 DTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             P        L  +  I     +    +  H   KD++A  R  +++E     + +L  
Sbjct: 365 QIP----ALLPLFMERGIPYSLTEEVQNVFQHFVGKDILAYLRLTINKESRGELLQILNK 420

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
           P      + I +  +   + +  Y   ++     + + Q         +   Q     + 
Sbjct: 421 PYRGLLREKIQREESPFSDLKKAYRGRKEERALLLLEAQ---------LQKMQELPVQER 471

Query: 504 FTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQNSYSSLQELISELEQYPPT-I 561
              I       Q   S    +  D    + L   L         ++     +E++    +
Sbjct: 472 ILFIRKDMGYEQYLESFAKKKNRDFEELQSLLEELTAMAEQTEGVEAFFRFVEKFNADCL 531

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           +R    +   VRIMT H AKGLE   VFL D    +      K                 
Sbjct: 532 QRQKEESGEGVRIMTYHGAKGLEFDEVFLPDCIEGIIPDGRAKT---------------- 575

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                              +   EE  R  YV +TRA  ++ I       ++K    R  
Sbjct: 576 -------------------QEELEEERRSFYVALTRARKKIHIYVTKERYSKKVKPSRFI 616

Query: 682 YDMV 685
            +++
Sbjct: 617 PELL 620


>gi|323347961|gb|EGA82220.1| Srs2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1174

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 97/623 (15%), Positives = 181/623 (29%), Gaps = 139/623 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               Y    Y+    K   LDF+DL++ T  LL         R ++   I H+L+DE QD
Sbjct: 198 AALGYFYQIYQSELSKKNTLDFDDLLMYTFRLLT--------RVRVLSNIKHVLVDEFQD 249

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ +++      F   K  H   R +  VGD  QSIY+F  A     L   R     
Sbjct: 250 TNGIQLDLM------FLFAKGNHHLSRGMTIVGDPDQSIYAFRNALAHNFLEMGRKCPIE 303

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            +        I L  ++RS+  IL   + + +        ++        R+        
Sbjct: 304 YS-------TIXLVENYRSSQKILNTSEILITQQ------NKGRQNRAPLRAQFDLDFPP 350

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V +                                          +  ++     +    
Sbjct: 351 VYMNFPAYFLEAPSL------------------------------VRELL-----YLKAL 375

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             +    D  +LVR+R+    I         +++I           D    + ++ L + 
Sbjct: 376 PNLFTFNDFAILVRQRRQIKRIESAL----IEHRIPYKIIRGHSFWDSKETRAMLNLLKL 431

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------ETETVYEYIQKFAN 475
           I S  D  + +  L  P          KI                 +  +  + +     
Sbjct: 432 IFSPNDKHAILASLLYPARGLGPATGEKIKNALDTLATDVSCFQILKDISSKKIMLDIPT 491

Query: 476 CGISKFQHVIKYIHE---LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE- 531
            G S     I  I     L+         D F  +      + +++ + G +  D L++ 
Sbjct: 492 KGRSVIADFISMIENCQLLLQSTLLGGLSDLFDKLYELSGLKYEYLYKDGKKKNDQLEKS 551

Query: 532 ------------------FLNFTLRNEQNS------------------------YSSLQE 549
                             FL    ++E +                            L+ 
Sbjct: 552 EPNLLNARHKNIELLKNYFLALLSKSESSDKEKNEAIKAATDEAEPIENKVITPKEYLRN 611

Query: 550 LISELEQYPPTIKRAHS----------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             + L  +    +   S            +  V I T+H AKGLE PVVF+      +  
Sbjct: 612 FFNSLSLHSDAAEEEESESNKDAKIKREKNGFVTISTIHGAKGLEWPVVFIPGCEEGIIP 671

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      ++         ++  ++           + + +E  R+ +V  TRA 
Sbjct: 672 -----CVFNDDKKDESEEDEEEDQENSKKDASPKKTRVLSVEDSIDEERRMFFVAQTRAK 726

Query: 660 DQLIICKHSNTSNEKKSNQRTWY 682
             L +       +  +    + +
Sbjct: 727 YLLYLSNTVTVEDVDRPRIASRF 749


>gi|159903624|ref|YP_001550968.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9211]
 gi|159888800|gb|ABX09014.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
            MIT 9211]
          Length = 1265

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 123/924 (13%), Positives = 262/924 (28%), Gaps = 180/924 (19%)

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
            K Q     + D+        + L  +     +       + K+  + F D +      L 
Sbjct: 343  KLQQAIADLFDK-------PAELVFIHAVGSVLESLRLKRLKSGFISFSDQL----KALD 391

Query: 162  KRDVS------AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
                         ++ ++ Q    ILIDE QDT  +QW +  ++           SS   
Sbjct: 392  PESNCSVKNNFPKLQERLRQRYKVILIDEFQDTDPLQWRIFNTVFG--------KSSKHL 443

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            L  VGD KQ+IY F G +    L  ++              +  L  +FR++A +L+ ++
Sbjct: 444  LVMVGDPKQAIYKFRGGDLNTYLLARKE----------ADRVDSLLTNFRASAPLLSSLN 493

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            ++ S       L   +  +++  S R     + +     +       + +  + +     
Sbjct: 494  QMMSCGLKYSAL---NVPSLKSGSKRKLLPLSTESHSLEILTPKPSSSEKVLNSSVP--- 547

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              +     ++   +   I  +I             +   DI +LV +           R 
Sbjct: 548  PLRNKVEQLIPNIVTNAILELIN-------KPDSELHPNDICILVNRHSQAND----IRL 596

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
              +   I     ++  + +  A   L      + S     +   +  SPL  +  + +  
Sbjct: 597  SLSKSGIPSRLINKGDIFESEAATILQRFIDCLSSPNSIDNIRLLACSPLMQWDINKLKD 656

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                +   + + ++               +    E  +IA           +    +  Q
Sbjct: 657  AEETKEIDDLIIQFTNWGNELNELGLIGCLSNFLESKNIASLSRKGTLLGDLFQCAQLVQ 716

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            + +   G                               L+  P   +         + ++
Sbjct: 717  EAVHNQGLNARGAARWLKQQ--------------RTKLLDPTPEDRQPNSDIAEEAINVI 762

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE  VV         +      +  +         +    P   + N I+   
Sbjct: 763  TIHRSKGLEFKVVICPYL----WQSPSSPRGPLWRDDVKKQWLISINPGWGNGNQIIDSA 818

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE---------KKSNQRTWYDMVY 686
            I    +    E  RL YV MTRA D+LI+   + +  E           ++     + + 
Sbjct: 819  IVEANQ----EAERLAYVAMTRAQDKLIVIWIAASKQENNPLKFFLFGPNSLDAKAEDLT 874

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                N          +    D      +     + + L+   T K+ +D+        S 
Sbjct: 875  FEKMNTWVKANNSNISIRQVDIGKVKGYWDKFDDKSILKLGPTPKRKLDKSWGRHSYSSW 934

Query: 747  IKNDINE-PYILNPSTIDTKGKTNLE-----------------------------SLLSD 776
            I +        LNP  ID       E                              L + 
Sbjct: 935  ISSTYRLNERPLNPDAIDEGKDLEQEVVNLENRNPDVTTFYQRENLSDYNWSKQGPLQNF 994

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK----EYKNLLLSITRL- 831
             +    G  +HK+L+ I        K+       +  +    +    + +  L  +  + 
Sbjct: 995  PRGPIAGECLHKILERINFRHPISCKDSELVIVDELRRSGIDEKHRVDVQVALERVLNIK 1054

Query: 832  ----LENPMMTTAMSCDSYSEVSVSGKINCPKKDI------------------------- 862
                L N       + +  +E+     ++  ++ I                         
Sbjct: 1055 MGKSLGNLRFKDIDNRNKINELGFDLCLSKNRQPIKTSDLEKTLHSCTKRRFGKAYSDQI 1114

Query: 863  ---------IISGRIDQISISQQ-----NIFIFEYKTHHHVPQ----------------- 891
                      ++G ID +   Q        ++ ++K++                      
Sbjct: 1115 KELNIYSRGFLTGSIDLVFNDQNEFSQKRWWVADWKSNWLANHPTNNLTTYCGPAHYSAS 1174

Query: 892  --EIEHIPYTHIAQLSIYEKILKD 913
              E E + + ++ Q ++Y   L  
Sbjct: 1175 RMEEEMMHHHYLLQANLYLVALHR 1198


>gi|325844620|ref|ZP_08168263.1| UvrD/REP helicase [Turicibacter sp. HGF1]
 gi|325489045|gb|EGC91432.1| UvrD/REP helicase [Turicibacter sp. HGF1]
          Length = 726

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 101/574 (17%), Positives = 192/574 (33%), Gaps = 116/574 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YE  K+   +LD++DL+     +LK  D   ++         HI IDE QDTS I
Sbjct: 183 QLYKKYEAFKESRYLLDYDDLLTTAFSILKHHD---YLLNFYQTRYTHIQIDEAQDTSKI 239

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E+I+ +           S    +F VGD+ QSIY+F GA PK++L  K          
Sbjct: 240 QYELIKLIA----------SRHHNIFLVGDDDQSIYAFRGAYPKQLLTFKETF------- 282

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            ++  I+ +  +FRSTA I++   +     ++    +  +                    
Sbjct: 283 -KEARILYMNQNFRSTASIVSTSSQFIQHNKSRYKKTIQTQNETGMSP------------ 329

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                               ++++ I+ +   + +         
Sbjct: 330 --------------------------TLHHFQTEQEQLSFLITTLKQAEDL--------- 354

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILS 430
              D+ +L R+                 ++I     +       H  ++D+ A+     S
Sbjct: 355 --NDVAILYRQNVSALP----LIEQFERHQIPFKLQEGKLSFFYHPIVRDIKAIITLSRS 408

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                SF  + K    + +        T+    + +   +   +     K +   + + +
Sbjct: 409 PNHLESFQRVAKILYLSATTQHQVTSQTESGYLDYLTRLVTFNSTYQREKVRLFKQNLMK 468

Query: 491 L------IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           L        +A   +  D+ + ++     + +   R   + + VL+              
Sbjct: 469 LPSLPCNRMMAFILNTLDYESYLIKKGFLKDEKEERLYTQGMAVLETLKMIAKD-----V 523

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            S +  +  LE     I    +     V ++T H +KGLE   VFL+D  + +   +   
Sbjct: 524 DSHKAFLERLEHLRL-ISEQSTTQAKGVNLLTFHASKGLEFKTVFLIDCMNGITPPQTA- 581

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                          I   +S+  ++              EE  RL YV MTRA +QL +
Sbjct: 582 ---------------IIEAKSQIFDHY-------------EEERRLFYVAMTRAKEQLTL 613

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
              +   N   S    + ++       DE  K +
Sbjct: 614 LSVAKKHNLLFSRSNFYKEVSKILNPIDEEPKPV 647


>gi|315090099|gb|EFT62075.1| UvrD/REP helicase [Propionibacterium acnes HL110PA4]
          Length = 1061

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 107/951 (11%), Positives = 267/951 (28%), Gaps = 101/951 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 51  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 110

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 111 MRELLAARDISDWPEELRTCAGTAQFASDVRVMAARLRQEGCDPQDLTEAGTASGVPE-- 168

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 169 ---WRMLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 221

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 222 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 271

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ + +        S          S+  G
Sbjct: 272 FP--------DVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSSRLRRHANHSTSTEAG 323

Query: 304 ------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT----I 353
                      +L  ++             +W S            ++A  +A      +
Sbjct: 324 TVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIPVL 383

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD--TPLITFLTRFLKNDYKISVVGNDRFI 411
            +              ++ A ++ V +          +  L          SV+      
Sbjct: 384 RSRDEHALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLETW 443

Query: 412 LTDHLAIKDLMALGRFI-LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYE 468
                 +    AL + +        +             +    ++ T            
Sbjct: 444 CRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSGDAITAELDTACEVYSVPPSLR 503

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
            + +       + Q     +          +    +     A   R++ ++   +     
Sbjct: 504 ALAQPLAVMTQRVQRAADLLRS--GATCHEALWALWQGSSWASSLRRRAVA-GDSTANRD 560

Query: 529 LDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKG 582
           LD   +     E     +       L      EQ P    R    + + V ++T H  KG
Sbjct: 561 LDGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVSVVTAHRIKG 620

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            E  VV +       +   +     +        G+      S                 
Sbjct: 621 REFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------E 664

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ--------RTWYDMVYDSFHNDER 694
                 RLL V  +RA  QL++C   +    K+ +             D +  +   +  
Sbjct: 665 NLRAETRLLLVASSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLSFASLTELV 724

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            +  ++    ++   +  E      +    E          +     +   P ++D++  
Sbjct: 725 GELRRVIADESESPGVRTEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQDDMDGE 784

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL-LQVIFTLPEHKRKNFI 805
             L+ S +           ++     +         G ++H++  + +      K    +
Sbjct: 785 IELSASHVGELLTCPRRWFMTRRAGASSGSAFRASIGSLVHRICAENMDQWSLPKALAEL 844

Query: 806 TSY---CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
            +       +A+   + E  +   ++ R   +  +         +EV V G I  P    
Sbjct: 845 EAAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTA 902

Query: 863 IISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 903 RVRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 950


>gi|207344042|gb|EDZ71311.1| YJL092Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 987

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 97/623 (15%), Positives = 181/623 (29%), Gaps = 139/623 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               Y    Y+    K   LDF+DL++ T  LL         R ++   I H+L+DE QD
Sbjct: 198 AALGYFYQIYQSELSKKNTLDFDDLLMYTFRLLT--------RVRVLSNIKHVLVDEFQD 249

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ +++      F   K  H   R +  VGD  QSIY+F  A     L   R     
Sbjct: 250 TNGIQLDLM------FLFAKGNHHLSRGMTIVGDPDQSIYAFRNALAHNFLEMGRKCPIE 303

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            +        I L  ++RS+  IL   + + +        ++        R+        
Sbjct: 304 YS-------TIILVENYRSSQKILNTSEILITQQ------NKGRQNRAPLRAQFDLDFPP 350

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V +                                          +  ++     +    
Sbjct: 351 VYMNFPAYFLEAPSL------------------------------VRELL-----YLKAL 375

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             +    D  +LVR+R+    I         +++I           D    + ++ L + 
Sbjct: 376 PNLFTFNDFAILVRQRRQIKRIESAL----IEHRIPYKIIRGHSFWDSKETRAMLNLLKL 431

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------ETETVYEYIQKFAN 475
           I S  D  + +  L  P          KI                 +  +  + +     
Sbjct: 432 IFSPNDKHAILASLLYPARGLGPATGEKIKNALDTLATDVSCFQILKDISSKKIMLDIPT 491

Query: 476 CGISKFQHVIKYIHE---LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE- 531
            G S     I  I     L+         D F  +      + +++ + G +  D L++ 
Sbjct: 492 KGRSVIADFISMIENCQLLLQSTLLGGLSDLFDKLYELSGLKYEYLYKDGKKKNDQLEKS 551

Query: 532 ------------------FLNFTLRNEQNS------------------------YSSLQE 549
                             FL    ++E +                            L+ 
Sbjct: 552 EPNLLNARHKNIELLKNYFLALLSKSESSDKEKNEAIKAATDEAEPIENKVITPKEYLRN 611

Query: 550 LISELEQYPPTIKRAHS----------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             + L  +    +   S            +  V I T+H AKGLE PVVF+      +  
Sbjct: 612 FFNSLSLHSDAAEEEESESNKDAKIKREKNGFVTISTIHGAKGLEWPVVFIPGCEEGIIP 671

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      ++         ++  ++           + + +E  R+ +V  TRA 
Sbjct: 672 -----CVFNDDKKDESEEDEEEDQENSKKDASPKKTRVLSVEDSIDEERRMFFVAQTRAK 726

Query: 660 DQLIICKHSNTSNEKKSNQRTWY 682
             L +       +  +    + +
Sbjct: 727 YLLYLSNTVTVEDVDRPRIASRF 749


>gi|6322369|ref|NP_012443.1| Srs2p [Saccharomyces cerevisiae S288c]
 gi|83305803|sp|P12954|SRS2_YEAST RecName: Full=ATP-dependent DNA helicase SRS2
 gi|4277|emb|CAA33706.1| helicase [Saccharomyces cerevisiae]
 gi|521096|emb|CAA54361.1| RADH [Saccharomyces cerevisiae]
 gi|1008264|emb|CAA89385.1| HPR5 [Saccharomyces cerevisiae]
 gi|285812810|tpg|DAA08708.1| TPA: Srs2p [Saccharomyces cerevisiae S288c]
          Length = 1174

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 97/623 (15%), Positives = 181/623 (29%), Gaps = 139/623 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               Y    Y+    K   LDF+DL++ T  LL         R ++   I H+L+DE QD
Sbjct: 198 AALGYFYQIYQSELSKKNTLDFDDLLMYTFRLLT--------RVRVLSNIKHVLVDEFQD 249

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ +++      F   K  H   R +  VGD  QSIY+F  A     L   R     
Sbjct: 250 TNGIQLDLM------FLFAKGNHHLSRGMTIVGDPDQSIYAFRNALAHNFLEMGRKCPIE 303

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            +        I L  ++RS+  IL   + + +        ++        R+        
Sbjct: 304 YS-------TIILVENYRSSQKILNTSEILITQQ------NKGRQNRAPLRAQFDLDFPP 350

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V +                                          +  ++     +    
Sbjct: 351 VYMNFPAYFLEAPSL------------------------------VRELL-----YLKAL 375

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             +    D  +LVR+R+    I         +++I           D    + ++ L + 
Sbjct: 376 PNLFTFNDFAILVRQRRQIKRIESAL----IEHRIPYKIIRGHSFWDSKETRAMLNLLKL 431

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------ETETVYEYIQKFAN 475
           I S  D  + +  L  P          KI                 +  +  + +     
Sbjct: 432 IFSPNDKHAILASLLYPARGLGPATGEKIKNALDTLATDVSCFQILKDISSKKIMLDIPT 491

Query: 476 CGISKFQHVIKYIHE---LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE- 531
            G S     I  I     L+         D F  +      + +++ + G +  D L++ 
Sbjct: 492 KGRSVIADFISMIENCQLLLQSTLLGGLSDLFDKLYELSGLKYEYLYKDGKKKNDQLEKS 551

Query: 532 ------------------FLNFTLRNEQNS------------------------YSSLQE 549
                             FL    ++E +                            L+ 
Sbjct: 552 EPNLLNARHKNIELLKNYFLALLSKSESSDKEKNEAIKAATDEAEPIENKVITPKEYLRN 611

Query: 550 LISELEQYPPTIKRAHS----------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             + L  +    +   S            +  V I T+H AKGLE PVVF+      +  
Sbjct: 612 FFNSLSLHSDAAEEEESESNKDAKIKREKNGFVTISTIHGAKGLEWPVVFIPGCEEGIIP 671

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      ++         ++  ++           + + +E  R+ +V  TRA 
Sbjct: 672 -----CVFNDDKKDESEEDEEEDQENSKKDASPKKTRVLSVEDSIDEERRMFFVAQTRAK 726

Query: 660 DQLIICKHSNTSNEKKSNQRTWY 682
             L +       +  +    + +
Sbjct: 727 YLLYLSNTVTVEDVDRPRIASRF 749


>gi|312621145|ref|YP_004022758.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201612|gb|ADQ44939.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002]
          Length = 756

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 107/574 (18%), Positives = 200/574 (34%), Gaps = 74/574 (12%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           + L L   +    E  KK+N +L   DLI   + L+K  D   ++  K+  +  ++ IDE
Sbjct: 227 SFLDLFLEVGREIENFKKENNILTPNDLIKYASKLVKGND---FVATKLASKYKYLFIDE 283

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+  Q+E++ +L E              +F VGDEKQSIYSF GA+ +  +    I 
Sbjct: 284 FQDTNRSQFELVNTLLE----------KGVNIFLVGDEKQSIYSFRGADIQSSIEMGNII 333

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
             +  +      +IE+  +FRS  +++ V++K+FS        S  +T   +    +   
Sbjct: 334 ANKCNSP-----LIEMTDNFRSNKNVIEVINKIFSQ-------SYSATYKGKLYQIKFDN 381

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              +   +   S  D +  PQ +            +   +    I   I N         
Sbjct: 382 YQPLIFPQINKSYVDQRSFPQYKWKGKTSKIENTLTIEEMDISTIIKKIKN------EMC 435

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 I+  DI VL RK +    I    +      KI V            AI     L
Sbjct: 436 YSDNSDIKYSDIAVLCRKNRQVEKIADELK----KNKIPVKIYGGGGFFQSNAIISTCKL 491

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             +I                          +I     +    Y  +       + KF   
Sbjct: 492 FEYISYPS----------------------EITKHEVKNTDYYFAMLSTGRNDLEKF--- 526

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
              ++EL   A+     D    +       + +IS   ++ +  L +            +
Sbjct: 527 ---LNELSLYARSNIVADILNFVFENTNIEEYYISTSQHQELYNLYKLREIVRNIHNQEF 583

Query: 545 SSLQELISELEQYPPTIKRAHSAN------HNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                    L     T ++  +A+       + +++MT+H +KGL   +V +      + 
Sbjct: 584 LHPLSFFEYLNNMILTGQKEENADFIEDKQQDSIQVMTIHKSKGLAFNIVIIPFIDEPIV 643

Query: 599 SHKHIKKMHIMPSLNDDPGIP----IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                  +    +  +         + I  +   +   S ++    K   EE  R+ YV 
Sbjct: 644 ISDTEPLITYRKTEKEMMIGFNKHKLKIYNNIEDDLDFSSMVTDEIKKQFEEELRVYYVA 703

Query: 655 MTRASDQLII-CKHSNTSNEKKSNQRTWYDMVYD 687
           +TRA + +I+   +   +N  ++   ++ D +  
Sbjct: 704 ITRARELIILKTNNRRENNIYRNTITSFLDWIKQ 737


>gi|190409409|gb|EDV12674.1| DNA helicase [Saccharomyces cerevisiae RM11-1a]
 gi|256271681|gb|EEU06720.1| Srs2p [Saccharomyces cerevisiae JAY291]
 gi|290771135|emb|CAY80687.2| Srs2p [Saccharomyces cerevisiae EC1118]
          Length = 1174

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 97/623 (15%), Positives = 181/623 (29%), Gaps = 139/623 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               Y    Y+    K   LDF+DL++ T  LL         R ++   I H+L+DE QD
Sbjct: 198 AALGYFYQIYQSELSKKNTLDFDDLLMYTFRLLT--------RVRVLSNIKHVLVDEFQD 249

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ +++      F   K  H   R +  VGD  QSIY+F  A     L   R     
Sbjct: 250 TNGIQLDLM------FLFAKGNHHLSRGMTIVGDPDQSIYAFRNALAHNFLEMGRKCPIE 303

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            +        I L  ++RS+  IL   + + +        ++        R+        
Sbjct: 304 YS-------TIILVENYRSSQKILNTSEILITQQ------NKGRQNRAPLRAQFDLDFPP 350

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V +                                          +  ++     +    
Sbjct: 351 VYMNFPAYFLEAPSL------------------------------VRELL-----YLKAL 375

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             +    D  +LVR+R+    I         +++I           D    + ++ L + 
Sbjct: 376 PNLFTFNDFAILVRQRRQIKRIESAL----IEHRIPYKIIRGHSFWDSKETRAMLNLLKL 431

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------ETETVYEYIQKFAN 475
           I S  D  + +  L  P          KI                 +  +  + +     
Sbjct: 432 IFSPNDKHAILASLLYPARGLGPATGEKIKNALDTLATDVSCFQILKDISSKKIMLDIPT 491

Query: 476 CGISKFQHVIKYIHE---LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE- 531
            G S     I  I     L+         D F  +      + +++ + G +  D L++ 
Sbjct: 492 KGRSVIADFISMIENCQLLLQSTLLGGLSDLFDKLYELSGLKYEYLYKDGKKKNDQLEKS 551

Query: 532 ------------------FLNFTLRNEQNS------------------------YSSLQE 549
                             FL    ++E +                            L+ 
Sbjct: 552 EPNLLNARHKNIELLKNYFLALLSKSESSDKEKNEAIKAATDEAEPIENKVITPKEYLRN 611

Query: 550 LISELEQYPPTIKRAHS----------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             + L  +    +   S            +  V I T+H AKGLE PVVF+      +  
Sbjct: 612 FFNSLSLHSDAAEEEESESNKDAKIKREKNGFVTISTIHGAKGLEWPVVFIPGCEEGIIP 671

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      ++         ++  ++           + + +E  R+ +V  TRA 
Sbjct: 672 -----CVFNDDKKDESEEDEEEDQENSKKDASPKKTRVLSVEDSIDEERRMFFVAQTRAK 726

Query: 660 DQLIICKHSNTSNEKKSNQRTWY 682
             L +       +  +    + +
Sbjct: 727 YLLYLSNTVTVEDVDRPRIASRF 749


>gi|331000262|ref|ZP_08323946.1| putative exodeoxyribonuclease V, beta subunit [Parasutterella
            excrementihominis YIT 11859]
 gi|329572428|gb|EGG54081.1| putative exodeoxyribonuclease V, beta subunit [Parasutterella
            excrementihominis YIT 11859]
          Length = 1141

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 151/1014 (14%), Positives = 288/1014 (28%), Gaps = 202/1014 (19%)

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
                  T     +   +T+++ K   D  +K +     F +                  T
Sbjct: 183  WEDILTTAAGLSRSMPLTRQM-KLMKDANQKPEDETTRFFE------------------T 223

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTN-DLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    YEE KK   +  F+DL+I     ++K  + +  I           LIDE QD
Sbjct: 224  FIDQATKLYEENKKDERLFTFDDLLIEAEERIVKDPEFTKAI----QNLYGAALIDEFQD 279

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T  IQ+ + + L  +         + + +  VGD KQSIY F  A  +  L  K      
Sbjct: 280  TDPIQYSIFKHLFLE------DPENSKPVIFVGDPKQSIYRFRNASLETYLLAKNEINN- 332

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                       +L  ++RST  I+  V+  F  PE            + +   +  +   
Sbjct: 333  ---------PYQLVKNYRSTPGIIAGVNAYF-NPEGKGSRGGFLNQALSYSPVKFNK-KK 381

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            + L  +   + +   +    S          E+   + A  IA  I +++  + ++    
Sbjct: 382  LPLLLEKDGKVEPLSSFAFWSNADTKALSNAETLRDMEAIAIAEEIESLLKENVLYDG-- 439

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LV KR     +    R       I  + +    +       +L ++   
Sbjct: 440  -RRLRPSDIAILVAKRFHADKVIEELR----RRGIRTLRSSNENVLCSKEAHELKSVLEA 494

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +    D         + +F  S +D+        +   + E   K               
Sbjct: 495  MYDPRDTRLVAAAQATRIFGDSLNDLLNNDAASAQARLLLENSAKIYEKSG--------- 545

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
               +I               L    G +   +         + E L+     + N+  SL
Sbjct: 546  ---IIAAVSNLFAGAKTEERLLQYGGERALTN------YQHILELLHQ----QHNTIDSL 592

Query: 548  QELISELEQY----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVF-----LVDTGSQVF 598
            Q L+  L+Q       +       + + VR+ T+H++KGL+ PVV+     +  +  Q F
Sbjct: 593  QGLLRWLKQEQKKSNDSYTLRRETDSDVVRVETIHSSKGLQYPVVYYLDRPISFSKGQKF 652

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR--------- 649
                   +    +    P   I     +S   +   + +   +     + +         
Sbjct: 653  RDDATGVITFYETEQKAPDDFIEKSYEESMRLLYVAMTRATARVVLPYFFKKTKNGAPHG 712

Query: 650  -------LLYVGMTRASDQLIICKHSNTSNEKKSNQ--------------------RTWY 682
                   L        S  L I    N   E  S +                     + +
Sbjct: 713  SVGGKNPLAQAISGETSGGLAIIGGLNRLREALSPKEASAREVRKALLDGISEYNKNSAH 772

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             ++      +         +        +       PE+  L      KQ          
Sbjct: 773  PLMLSEKALNAYTPFEIRFDFEPGKYGDSEVSFRQPPEHLDLRAGRGEKQNRSWISSSFT 832

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD--------NQTFNRGLIIHKLLQVIF 794
                     +   I + S      +T  ES   D              G  +H+LL+ IF
Sbjct: 833  SLLRTMEAQDSAVITDESEALESEETVAESKEEDVLEVLKGTQSAAEFGTKVHELLEKIF 892

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT----RLLEN------------PMMT 838
                H  KN +  +     K + A E +     I        EN              ++
Sbjct: 893  DKNFHNWKNRVYKFLDDRFKGYVAPETEERKAEIETKTEEFFENLFEAKILPSAPGFHLS 952

Query: 839  TAMS--CDSYSEVSVSGKINCPKKDI-------------------------------IIS 865
                   D   E+     +  P K                                  ++
Sbjct: 953  QLFKNLKDCRPELKFMLSVGAPIKGRERLTASLLAETLTAFDSRYKDFHLSELDMRGYLT 1012

Query: 866  GRIDQISISQQNIFIFEYKTHHH----------VPQEIEHIPY--THIAQLSIYEKILKD 913
            G ID    +    ++ ++KT+             P+ +  +     +  QL++Y   LK 
Sbjct: 1013 GSIDLAFAADGKYWVIDWKTNKIDYRNNTPELYTPEAVNALMKNNHYELQLALYLVALKR 1072

Query: 914  SYPN----------KSLVCLLI-YVSE------PKVFIIPQNKLNKAFAEISTK 950
                          K++   +  ++           F  P++ L +   +    
Sbjct: 1073 MLEVRLNLPEGTGYKAIGGAVYCFLRGIDRNARGTYFERPKDALIECLDDFLKN 1126


>gi|160938156|ref|ZP_02085512.1| hypothetical protein CLOBOL_03050 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438960|gb|EDP16716.1| hypothetical protein CLOBOL_03050 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1331

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 79/497 (15%), Positives = 181/497 (36%), Gaps = 61/497 (12%)

Query: 14  ELIYKDLWPLPYFQVSDINKYVS----LSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
           E + + +  L       +N  +     L+ E    +   K + + +A+ T   E  ++ L
Sbjct: 218 EDVARQMAELSGQLGEALNVCLEENGPLAYEPMLISDRSKIEAIGRAASTGSFEALYNSL 277

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM-------FKS 122
            +    +  + +   I  +        ++++KK+  +  ++  + +  ++        + 
Sbjct: 278 QNMSFDRLASIRSKDIDGDKKAFVSACRDRIKKAVAKCRELYGQQSPQEVVESMRGTRRV 337

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----------KKRDVSAWIRY 171
               L L    +  Y +AK++  VLDF DL     ++L           +     + +  
Sbjct: 338 IRELLRLTGMFDQAYRDAKRERNVLDFNDLEHLALEVLYVREETGNGEERVSRHPSQVAD 397

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           ++ ++   IL+DE QD++ +Q  +I S++ +             +F VGD KQSIY F  
Sbjct: 398 ELSRQYEEILVDEYQDSNYVQEALITSISRE-------RFGYPNVFMVGDVKQSIYRFRL 450

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSE 289
           A P+  + +     ++    G  + +IEL  +FRS   +LT V+ VF      N  G++ 
Sbjct: 451 ARPELFMDKYEKYSRQ----GGPYQMIELQQNFRSRESVLTSVNDVFYQIMTKNLGGITY 506

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ------------------ESWTS 331
              T +   +              +                              E+   
Sbjct: 507 TPETALYPGAVFEEVNRKTVCGPGLEEGESDTQESGPVSFLAGTPTELLMVDTGAEALKQ 566

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDT 386
             +     ++  + AR IA  I  ++           S G  R  +  D+++L+R     
Sbjct: 567 LDEDSLDYTAKELEARLIAGRIRQLVSQGQGILVWDKSRGAYRRARYGDVVILLRSMTGW 626

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                +   +  +  I      R    + + ++ +++L   + +   D+    +++SP+ 
Sbjct: 627 S---EVFVNVLMNEGIPAFAQTRTGYFNTVEVETVLSLLSVVDNPMQDIPLAAVMRSPIV 683

Query: 447 NFSEDDIFKICTQRHET 463
              ++++  +       
Sbjct: 684 GMDDEEMAWMMAAYKRN 700



 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/549 (15%), Positives = 153/549 (27%), Gaps = 89/549 (16%)

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNE 524
            +     + A+    K   +   +  L   A+    H+    +               G  
Sbjct: 774  LCSIPAEAAHSISLKSLKLSLLMERLRGEARHLPIHELLYRVYKESGYYDYVSAMPAGET 833

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHT 579
                LD  +      E  SY  L   +  +E+                  N VRIM++H 
Sbjct: 834  RRANLDMLVEKAAAYESTSYKGLFHFVRYIEKLKKFDTDFGEASVAGEQDNTVRIMSIHK 893

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            +KGLE PVVFL   G +        ++ +   L           + K+       L + L
Sbjct: 894  SKGLEFPVVFLAGLGKRFNKQDAYGQILLDADLGAAADFLDLELRVKAPTLKKQALKRRL 953

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK------------------KSNQRTW 681
            +  T  E  R+LYV MTRA ++LI+     +   K                   ++  + 
Sbjct: 954  ELETMGEELRVLYVAMTRAKEKLIMTAADKSLENKLGKWKDIPLSQGQLPYTILASANSC 1013

Query: 682  YDMVYDSFHNDERV---KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
             D +  +           +      +  +E           E+      E +        
Sbjct: 1014 LDWLLMAQPAIPAAHMEMRQIQVKDLIGEEITRQIIRKMKKEDLLNLDGERVYDAAFGTH 1073

Query: 739  IPKKLFSPIKNDINE--------------------------------------------P 754
            + K L      + +                                              
Sbjct: 1074 LRKVLEYEYPYESDTGLYAMVSVSELKKQSQIGRAEDAIGTDRDNLEGAALGELTALRGK 1133

Query: 755  YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
              +  S     G+ N  S    N+   RG   H +L+ I     H               
Sbjct: 1134 QDVAGSGFRESGEQNKPSSSGPNRGALRGTAYHAVLEHIRFHEIHSLSEVKPVVDELLEN 1193

Query: 815  LWPAKEYKNLLLS--ITRLLENPMMTTAMSCDS----YSEVSV-------SGKINCPKKD 861
             +  +E ++ +    I   L + + T      +    + E             +    + 
Sbjct: 1194 GFLDQEARDFINPNVIWNFLSSSLGTRMAKAQAEGRIHKEQQFIIGIPAREMGLGDSDEL 1253

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH----IPYTHIAQLSIYEKILKDSYPN 917
            ++I G ID     +  + + +YKT H      E     +   +  QL  YE+ L      
Sbjct: 1254 VLIQGIIDAYLEEEDGLVLIDYKTDHVPEGSPEQGEKMLAERYRVQLDYYERALTQL-TE 1312

Query: 918  KSLVCLLIY 926
            K +   +IY
Sbjct: 1313 KHVKERIIY 1321


>gi|39935869|ref|NP_948145.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009]
 gi|39649723|emb|CAE28244.1| ATP-dependent DNA helicase [Rhodopseudomonas palustris CGA009]
          Length = 687

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 111/731 (15%), Positives = 210/731 (28%), Gaps = 125/731 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I + +       +S    +       G   +   A+   L       
Sbjct: 69  RRAAAEMTRRVERIARKVLGDRASALSGGLHWAGTFHGIGARLLRDYAERIGLDPGFTIH 128

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++       F+   +    +       +  +   +      +         +
Sbjct: 129 DREDSADLMNLVRHDLGFSKADSRFPAK--ATCLSIYSRCVNAGQPLDVVLGA-----NY 181

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                     K L A Y EAK+++ VLD++DL++    ++++   +  I        +H+
Sbjct: 182 PWCAGWAAELKQLFAAYVEAKQRHNVLDYDDLLLYWAQVMEEPAFAEEI----GSRFDHV 237

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  V+ +L            +   L  VGD+ Q+IYSF  A  + +L  
Sbjct: 238 LVDEYQDTNALQARVLLAL----------KPNGVGLTVVGDDAQAIYSFRAATVRNILDF 287

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +              ++ L  ++RST  IL+  + V  +                    
Sbjct: 288 PKAF-------DPPARVVTLDRNYRSTQAILSAANGVIDLARERFTK----------NLW 330

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                G   L   V  + D                          AR I   + +     
Sbjct: 331 TDRADGARPLLVSVRDETDQ-------------------------ARYIVERVLDAREGG 365

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +  K   VL R    +  +            I  V        D   +KD
Sbjct: 366 ----------VTLKQQAVLFRTSSHSAPLELEL----TRRNIPFVKFGGLKFLDAAHVKD 411

Query: 421 LMALGRFILSQEDDLSFVCM-LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           ++AL RF+ +  D ++   + L       +                             +
Sbjct: 412 MLALLRFVQNPRDRVAGFRVMLLMQGVGPASAQKALDTMTAAADPLGALTALPAPPRAGA 471

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            ++  +  + EL        P +    ++       +            L +        
Sbjct: 472 DWRGFVAAVQELRS-GDAGWPAEIERALIWYAPHLDRI-HEDAETRKADLVQLAQIA--- 526

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             + Y S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++   
Sbjct: 527 --SGYPSRERFLTELTLDPPDATSDQAGVPTLDDDYLILSTIHSAKGQEWKQVFVLNVVD 584

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                                                         +  EE  RLLYV M
Sbjct: 585 GCMPSDLGTGTS----------------------------------AEIEEERRLLYVAM 610

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA D L +          ++ Q   +     +    ER+  +    S  +    A   +
Sbjct: 611 TRAKDDLHLVVPQRFFTHGQNAQGDRHVYAARTRFIPERLLPLFERTSWPRVTPEAAAAA 670

Query: 716 THHPENTPLER 726
              P      R
Sbjct: 671 QRGPRIDINSR 681


>gi|208435433|ref|YP_002267099.1| ATP-dependent nuclease [Helicobacter pylori G27]
 gi|208433362|gb|ACI28233.1| ATP-dependent nuclease [Helicobacter pylori G27]
          Length = 963

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 135/865 (15%), Positives = 269/865 (31%), Gaps = 144/865 (16%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T  K     +  KK       L+    E      R+   K      A       
Sbjct: 236 FLNSSLTWLKKKSEYQFFKKLKSEIPTLESECKEIENDLKRYYEAKE----TAIFKKFPK 291

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y+ A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 292 FIQLYDNATSKIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSL 351

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY+F G+                 +
Sbjct: 352 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS-----------FSSLFES 400

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS   I+  V+ +F         +       +  S++    G V++
Sbjct: 401 VSKDFYHDNLQFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKASSNKHATDGYVKV 460

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I   + N++             
Sbjct: 461 SLVA-------------------------DDRELLLDQILQEVQNLLEH----------R 485

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L    +D   I    +   +  + S   +          I            
Sbjct: 486 IDPKDITILCTTNEDALEIKNYLQENLSTIRPSTESSANLSQFVESKIIKNALEYALAEE 545

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD+  +     + E+V  ++ K                  
Sbjct: 546 PYKPFYKHSVLK--LAGYLHDDVIALPGFNPKKESVAGFVWK------------------ 585

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                           +        Q          D  D FL      E+    S+   
Sbjct: 586 -------------VMELFELYGECAQICLELAVGCEDA-DGFL------EKLETKSIASF 625

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +                    +IMT+H +KG++ P V + +      +  H  ++    
Sbjct: 626 NA-----------------KGAQIMTIHKSKGMQFPYVIVCE-RLGKPNSSHSNQLLEEY 667

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           +  +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 668 NGAELLRLYYRMKNREVVDKDYARALDKEEAAKDHEEINVYYVAFTRAELGLIVVAKDKK 727

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            ++K+S + +  +   +S    ++  K +  N   +++                 ++E +
Sbjct: 728 ESKKESKKESKKESKKESKKESKKESKKESKNKTMREQLDLVPLEEGEIAPVISPQKEPL 787

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                 +             + E      S  +            D +  N G+ +HK L
Sbjct: 788 ITSALIKP------HAYGEQVQEIEEEPDSDYEKNN---------DQEAINFGIALHKGL 832

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
           +       +  K  +  Y   +   +   +Y+ L  S+     +  + T           
Sbjct: 833 EY--QYAYNVPKQSVLEYLNYHHGFYGL-DYQALEESLELFENDAEIQTLFKN-----YF 884

Query: 851 VSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
           + G+     + ++   RID +   +   +++ +YK+  +          +H AQ+S Y  
Sbjct: 885 LKGEAAFLFEGVV--SRIDVLLWDRGQNLYVLDYKSSQN-------YQQSHKAQVSHYAA 935

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFI 934
            LK   P+  +   +IY +  ++  
Sbjct: 936 FLKTQAPHFKIQAGIIY-AHKRLLE 959


>gi|329939647|ref|ZP_08288948.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329301217|gb|EGG45112.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 1244

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 113/766 (14%), Positives = 218/766 (28%), Gaps = 126/766 (16%)

Query: 38  SMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            +          A+ L++A          F  L S  L       ++++     +     
Sbjct: 134 RLLADATRYQLAARVLREAPGPYPALTRSFPDLVSDLLALDSELAEHLVRPTEVQAFDA- 192

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                +  D    +R      +      A+      L   Y  AK++  +LDF D I  +
Sbjct: 193 -----ELLDTLAGVRLGNADLRKVPEAAAARRSLAGLVERYRAAKRERDLLDFGDQIALS 247

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L         +   + +E   +L+DE QDTS+ Q             G     S   +
Sbjct: 248 AAL----SGLPEVGRILREEFRVVLLDEYQDTSVAQ--------RVLLSGLFGGGSGHPV 295

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            AVGD  Q+IY + GA    +              G+  +   L  + RS   +L + + 
Sbjct: 296 TAVGDPCQAIYGWRGASVANLDDFPAHFP---HADGRPAARQALSENRRSGGRLLDLANG 352

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           + +                     R    G   L     ++ + Q         +     
Sbjct: 353 LAA-------------------PLRAMHAGVEALRPAPGAEREGQVRCALLRTHAEEIG- 392

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                       IA +I++++ T            +  +I VL R   D   I       
Sbjct: 393 -----------WIAESIAHLVRTGK----------EPGEIAVLCRTAGDFAEIQGALVA- 430

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                + V       L     + DL+A+   +     + S V +L  P +     D+  +
Sbjct: 431 ---RDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALL 487

Query: 457 CTQRH---------------------------ETETVYEYIQKFANCGIS---------- 479
             +                             E  ++ + +  F    +           
Sbjct: 488 GRRARLLVSHTRVDEDDPDVRLAAAVEGVDPTEVVSLADALDTFLELPMEAGHEDDGLPF 547

Query: 480 ------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLD 530
                 +F  +   + +L   +      D    +L       +  +          + L 
Sbjct: 548 SSDARVRFARLAAELRDLR-RSLADPLMDVLHRVLAVTGLEVELSASPHALAARRRETLA 606

Query: 531 EFLNFTLRNEQNSYS-SLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLESP 586
            FL+       N    SL   +  L            A     N V+++T H +KGLE  
Sbjct: 607 NFLDVAASFAANEPETSLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWD 666

Query: 587 VVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           VV +    +  F     ++       ++P         +   +S     +     + +K+
Sbjct: 667 VVAVPGLVTGTFPSTQGREKWTAQGKVLPHPLRGDAATLPEVESWDSRGL-RGFHEAMKE 725

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY--DMVYDSFHNDERVKKIK 699
               E  RL YV  TR    L+   H    ++KK    + +   +          ++   
Sbjct: 726 HQLTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSDFLVALYAHCAAGHGEIEAWA 785

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
              +  ++       S  H    PL+     ++    + +   L  
Sbjct: 786 EPPAEGEENPALLAASADHAWPLPLDEAALARRRAAAETVLAHLEH 831



 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/293 (10%), Positives = 69/293 (23%), Gaps = 33/293 (11%)

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                +                  +    ER+   +  +          E  T    +  L
Sbjct: 919  TGSRSVGRPADRPVVPHQAPPPGTQSGPERIPHSRTADVPGGTPLTPEEARTLASWDRDL 978

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
              +    +L+  +    ++  P     ++   L         +              RG 
Sbjct: 979  --DALTGELLRARAGVTEVVLPASLTASQLMRLAEDPDGLAQELARPMPRPPQPAARRGT 1036

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
              H  ++                +      +    E       I    +   +  A +  
Sbjct: 1037 RFHAWVES--------------RFEALRLPMLEPDELPGTEAEIADERDLEALKEAFART 1082

Query: 845  ---SYSEVSVSGKINCPKKDIIISGRIDQISISQQ----NIFIFEYKTHHHVPQEIEHIP 897
                 +   V           ++ GRID +    +       I ++KT+     +     
Sbjct: 1083 PYAHRTPYRVEAPFQIGIAGRVVRGRIDAVYREGEGGTARYEIVDWKTNRAPTADP---- 1138

Query: 898  YTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
                 QL++Y     +    P + +    +YV   +V   P          + 
Sbjct: 1139 ----LQLAVYRLAWAEQRGVPLERVTAAFVYVRRGEVVRPPDLPGRAELERLL 1187


>gi|317181241|dbj|BAJ59027.1| helicase [Helicobacter pylori F32]
          Length = 938

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 130/866 (15%), Positives = 258/866 (29%), Gaps = 180/866 (20%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T  +        KK  D    L+   +E      R+   K      A       
Sbjct: 245 FLNSSLTWLEKKGEYRYFKKFKDEIPTLESECEEIENDLKRYYEAKE----SALFKKFPK 300

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D  I HILIDE QDTSL
Sbjct: 301 FIQLYDKATSKIQALDFDAIKDKVHALLNGYEEMPAEFFYFRLDSRIAHILIDEFQDTSL 360

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY F G+                 +
Sbjct: 361 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYGFRGS-----------FSSLFES 409

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS+  I+  V+ +F         +       +  +++    G V++
Sbjct: 410 VSKDFYHDNLEFNHRSSPLIINYVNTIFKKAYQNSPTAYLEQKYPKASNNKHATDGYVKV 469

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 470 SLVA-------------------------DERELLLEQILQEAKNLLEH----------R 494

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L     D   I    +   +  + S   +          I            
Sbjct: 495 IDPKDITILCATNDDALEIKNYLQENLSAIRPSTESSTNLSQFVESKIIKNALKYALAEE 554

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD+  +     + E+V  ++ K                  
Sbjct: 555 PYKPFYKHSVLK--LAGYLHDDVIALPGFNPKKESVAGFVWK------------------ 594

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                                    Q          D  +EFL      E  S+      
Sbjct: 595 -------------VMEWFELYGECAQICLELAVGCKDA-NEFLEKLEAKEIASFKI---- 636

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                                 +IMT+H +KG++ P V + +   +  ++    +     
Sbjct: 637 -------------------EGAQIMTIHKSKGMQFPYVIVCERLGKPKTNNS-NQFLEEY 676

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           S  +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 677 SGTELTRLYYRMKNREVVDKDYARALDKEEAAKNHEETNVYYVAFTRAELGLIVVAKDKK 736

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
              +K               +   +++ ++   I+  +          P     + +E  
Sbjct: 737 GMREKL--------------DLAPLEEGEIAPVISSQKEPLIPSVVIKPHAYGEQVQEIE 782

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
           ++  D +K                                       +  N G+ +HK L
Sbjct: 783 EEPSDYEKNND-----------------------------------QEAINFGIALHKGL 807

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EV 849
           +       +  K  +  Y   +   +   +Y+ L  S+     +  +       +   EV
Sbjct: 808 EY--QYAYNIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQALFKNLALRGEV 864

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           +         + ++   RID +   +   +++ +YK+  +          +H AQ+S Y 
Sbjct: 865 AF------LFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSHKAQVSHYA 909

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFI 934
             L+   P+  +   +IY +  ++  
Sbjct: 910 AFLQTQAPHFKIQAGIIY-AHKRLLE 934


>gi|86160294|ref|YP_467079.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776805|gb|ABC83642.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1111

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 128/939 (13%), Positives = 280/939 (29%), Gaps = 72/939 (7%)

Query: 23   LPYFQVSDINKYVSLSME------------TGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            +P  +  D+ K+  L+ E             G+  +    + +++  + +        L 
Sbjct: 219  VPAARRPDLAKFRELADELLGYAAGSSGDGAGSRWVAATRRRIERIREEEDPVLVLKELL 278

Query: 71   SFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                 +K   + +    +              K       +R+              +  
Sbjct: 279  RCAPHRKLAMKADFADDRAGWALYKAFLGDDGKKALREGSLREDLLRPFARWLARRLVAA 338

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A  + A YE  K ++  +   D +    +L         +R +     +H+++DE QDT 
Sbjct: 339  APAVVAMYERVKARHRAV---DQLDLLLELRDLLQRDRAVRAEYQALFDHVMVDEFQDTD 395

Query: 190  LIQWEVIRSLTEDFFVGKNTHS---SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
             +Q EV+  L E   V  +       P  L  VGD KQSIY F  A+       + I ++
Sbjct: 396  PLQAEVVLYLCEQGAVASDWRDVRLVPGKLTIVGDPKQSIYRFRRADIGVYAAVRAIVER 455

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + +L  +FR    ++  ++  F       G +          +  +    
Sbjct: 456  ------GPHVVAKLKANFRCEPALVRWLNGTFD---GVLGKAAGDAPVFDPGAGTVANEP 506

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             +   +              ES         +  + +   R +      +I      + G
Sbjct: 507  LLAGRDGGAPCAVQVLPLAAESGRKPELRATEAKALAAWLRWLVEGKKRII---VDPATG 563

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R     D+ VLV    + PL+      L     +        +       +  +   R
Sbjct: 564  APRPAGYGDVAVLVTATVNLPLLFPELDRL----GVPYAARGGTLFLADPLHQQFLLGLR 619

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +  ++D ++   +L+ P F    DD+ +                   + G+ + +   +
Sbjct: 620  ALADRDDGIAQAALLRPPFFAVDHDDLARARAADP----------ASTHPGVLRARAAQE 669

Query: 487  YIHELIHIAQFCSPHDFFTLILGAK-KGRQQFISRFGNEVIDVLDE--FLNFTLRNEQNS 543
             + EL        P      +L     GR   +   G + ++ L E   +   +  E   
Sbjct: 670  VVRELRRTRLDRPPGATARDLLERTAFGRAAALGPNGAQRLEALRELCLVLEAVAAEGLD 729

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            Y +    +         +        + V+I+TVH AKGLE P+V L D  + + +    
Sbjct: 730  YDAATARLRAWVDDAVQLDPPRPVGTDAVQILTVHQAKGLEFPIVVLWDGCANLAARDVR 789

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                +  +        + +   +       ++    K+    E  RL+YV  TRA D L+
Sbjct: 790  APFVVDRT---GEAWAVALDGLEWEEPEGGEVAGREKRYLDAERLRLVYVAATRARDLLV 846

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            +        E+          +     + E    ++           A+      P   P
Sbjct: 847  LPVAGEPDPER----------ITGRLVSGEPAAPVETLAPYAIGAEPAWAGELPAPAPRP 896

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ----- 778
                  +   +          +                     +   E+     +     
Sbjct: 897  ATDGSALAAEVRTPWRSAIAEAARPRFAPGSVTGEAHARTEAAERPGEAGPPRPERQSRH 956

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
                G  +H  + +    P       +              E    ++     LE   + 
Sbjct: 957  GRVFGDTVHLAIGLALRGPALAPTAAVARAAAATGLSERRTEAAEDVVRALAALERAGLR 1016

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
             A       E+ +   +       ++ G +D + +    + + ++KT      ++     
Sbjct: 1017 RAPGP----ELQLEYPVAHAADGKLVQGYVDLLGVRDGRVVVVDFKTDAPPAGDVHASHA 1072

Query: 899  THIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFII 935
             ++ Q+  Y +IL      +   +   L++ ++  +  +
Sbjct: 1073 AYVEQVRGYARILVALGVAREGAVDAGLLFTADGGLRWV 1111


>gi|314983239|gb|EFT27331.1| UvrD/REP helicase [Propionibacterium acnes HL110PA3]
          Length = 1058

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 107/951 (11%), Positives = 267/951 (28%), Gaps = 101/951 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 48  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 107

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 108 MRELLAARDISDWPEELRTCAGTAQFASDVRVMAARLRQEGCDPQDLTEAGTASGVPE-- 165

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 166 ---WRMLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 219 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ + +        S          S+  G
Sbjct: 269 FP--------DVSVHHLTTNYRNSQHIAEVVESLRTGMPVVPSSSRLRRHANHSTSTEAG 320

Query: 304 ------QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT----I 353
                      +L  ++             +W S            ++A  +A      +
Sbjct: 321 TVAALRAPSITRLVRKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIPVL 380

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD--TPLITFLTRFLKNDYKISVVGNDRFI 411
            +              ++ A ++ V +          +  L          SV+      
Sbjct: 381 RSRDEHALSDIYAVTHILNALEMAVALASGAQPSARDVATLLSNPLAGIDRSVIHRLETW 440

Query: 412 LTDHLAIKDLMALGRFI-LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYE 468
                 +    AL + +        +             +    ++ T            
Sbjct: 441 CRLVRGVDVDWALLKELGADPTVTAAGKSERTDDASRSGDAITAELDTACEVYSVPPSLR 500

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
            + +       + Q     +          +    +     A   R++ ++   +     
Sbjct: 501 ALAQPLAVMTQRVQRAADLLRS--GATCHEALWALWQGSSWASSLRRRAVA-GDSTANRD 557

Query: 529 LDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKG 582
           LD   +     E     +       L      EQ P    R    + + V ++T H  KG
Sbjct: 558 LDGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVSVVTAHRIKG 617

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            E  VV +       +   +     +        G+      S                 
Sbjct: 618 REFDVVAVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------E 661

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ--------RTWYDMVYDSFHNDER 694
                 RLL V  +RA  QL++C   +    K+ +             D +  +   +  
Sbjct: 662 NLRAETRLLLVASSRARHQLLLCSVDSAEEGKRPSGLVAGLPHIEDNADSLSFASLTELV 721

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            +  ++    ++   +  E      +    E          +     +   P ++D++  
Sbjct: 722 GELRRVIADESESPGVRTEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQDDMDGE 781

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL-LQVIFTLPEHKRKNFI 805
             L+ S +           ++     +         G ++H++  + +      K    +
Sbjct: 782 IELSASHVGELLTCPRRWFMTRRAGASSGSAFRASIGSLVHRICAENMDQWSLPKALAEL 841

Query: 806 TSY---CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
            +       +A+   + E  +   ++ R   +  +         +EV V G I  P    
Sbjct: 842 EAAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTA 899

Query: 863 IISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            + G ID++    +   ++ + KT      + + I  +H  Q+ +Y+ ++ 
Sbjct: 900 RVRGSIDRLERDAEGAYYVVDLKTGT---SQSDEIKQSHRLQIGVYQAVVA 947


>gi|327398224|ref|YP_004339093.1| UvrD/REP helicase [Hippea maritima DSM 10411]
 gi|327180853|gb|AEA33034.1| UvrD/REP helicase [Hippea maritima DSM 10411]
          Length = 1025

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 153/938 (16%), Positives = 307/938 (32%), Gaps = 149/938 (15%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
            +   + + +    L     ++I     +  E+      ++ +TL+        E      
Sbjct: 224  DIKAKTLEEIYNSLKRKVRTEIGIIRQILEESKKLFDGRQIRTLKTI----DEENIIEKY 279

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                  Q   P  N +  + N   P+ ++   +S +  I+I ++F   K      A    
Sbjct: 280  EKLKERQSDNPSCNFL--KSNNLPPETEKAFNESFNSLIEISEQFLLLKGVYEAEAIKEQ 337

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTND-----LLKKRDVSAWIRYKIDQEINHILIDE 184
               L    +  K    ++      I+T       +L+K    ++   ++ + I+H LIDE
Sbjct: 338  LSKLKEIEKRIKSSLNIV-----EISTISKDISGILRKDLGVSYAFCRLGERISHYLIDE 392

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
             QDTS  Q+E +  L ++   G+       ++F VGD+KQ+IY++ G +         I 
Sbjct: 393  FQDTSHSQFEAMEPLIDNALAGEG------SVFVVGDKKQAIYAWRGGD-------YTIF 439

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS-----IPENAQGLSEDSTTTIRHRS 299
             K     G +   ++L  ++RS  +I+   +KVF        E +  LS++S       +
Sbjct: 440  DKITNKDGIETDRLKL--NYRSAKNIVKFNNKVFKVAKLLNNEFSSALSKNSAGKKIRDA 497

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                   + Q  ++    ++      + +     D    E     + R I   I      
Sbjct: 498  IIDIYKYSYQRIDKNKQDNNPGYIEVKLADKDVIDENRDEFYRKSMIRLIDRLI------ 551

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                    K  ++   I++L+R++++   +    +       I  +  D   L  +  IK
Sbjct: 552  -------NKFKLKPSQIMILIRQKENIKKVFSWLKEEFP--NIEFITEDSLTLISNAEIK 602

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
             L+ +   I   E++ ++   L+    N                                
Sbjct: 603  KLLLVASAIA-FEEEPAYKKALELINCNID------------------------------ 631

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
                    I  L    +  +P++ F  +L   +   +             D  L   L+ 
Sbjct: 632  --------IKGLTEQIKGLTPYEVFVKLLSFDEFDNK-------NNKAYFDRLLEEVLKL 676

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF- 598
                  SLQE+I       P I    +     VRIMT+H AKGLES  V +      +F 
Sbjct: 677  -TEQQKSLQEIIQYFY-DNPDITITLNEEIEAVRIMTIHKAKGLESHTVIVPFYDWSLFN 734

Query: 599  -SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                  + + + P +             K   +   +      K+   E   ++YV  TR
Sbjct: 735  PPKNLYRTVDLSPFVKGKKAFLKIDKDIKLFLDDAKEQYADFVKTQFIESLNIMYVASTR 794

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A + L I          K       D +    + D+  +K  L      +     E  + 
Sbjct: 795  AKENLFIIGTFKEKKNNKMTSGDMLDSILKGVYPDQFKQKFFLKVLKFGELEKQEENKSG 854

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
              ++  +E++                          P  ++ S  +       ES  ++ 
Sbjct: 855  SVDDGEIEQQ-------------------------PPKRVSISR-EFLKVYPKESFNANI 888

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
            +    G + H  +  I  +      N       K + L   K     +  I   LE+  +
Sbjct: 889  EEKRLGSLYHLAMSFIGFMGNKNIDNIAEKAYQKASSLMGYKN-PKAVGLIRNTLED--L 945

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                            +      +I+   R D+I +    I+I ++K+     +      
Sbjct: 946  KDYFENIDG--FHNEKEFVDRYGNIL---RPDRIVVKNSQIYIIDFKSGKKENE------ 994

Query: 898  YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              H+ Q+  Y ++ K +        ++ Y  + ++  +
Sbjct: 995  --HLQQVGNYMRLFKKA------KGIIYYADKREIVRV 1024


>gi|303258192|ref|ZP_07344199.1| putative exodeoxyribonuclease V, beta subunit [Burkholderiales
            bacterium 1_1_47]
 gi|302858945|gb|EFL82029.1| putative exodeoxyribonuclease V, beta subunit [Burkholderiales
            bacterium 1_1_47]
          Length = 1141

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 150/1014 (14%), Positives = 288/1014 (28%), Gaps = 202/1014 (19%)

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
                  T     +   +T+++ K   D  +K +     F +                  T
Sbjct: 183  WEDILTTAAGLSRSKPLTRQM-KLMKDANQKPEDETTRFFE------------------T 223

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTN-DLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    YEE KK   +  F+DL+I     ++K  + +  I           LIDE QD
Sbjct: 224  FIDQATKLYEENKKDERLFTFDDLLIEAEERIVKDPEFTKAI----QNLYGAALIDEFQD 279

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            T  IQ+ + + L  +         + + +  VGD KQSIY F  A  +  L  K      
Sbjct: 280  TDPIQYSIFKHLFLE------DPENSKPVIFVGDPKQSIYRFRNASLETYLLAKNEINN- 332

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                       +L  ++RST  I+  V+  F  PE            + +   +  +   
Sbjct: 333  ---------PYQLVKNYRSTPGIIAGVNAYF-NPEGKGSRGGFLNQALSYSPVKFNK-KK 381

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            + L  +   + +   +    S          E+   + A  IA  I +++  + ++    
Sbjct: 382  LPLLLEKDGKVEPLSSFAFWSNADTKALSNAETLRDMEAIAIAEEIESLLKENVLYEG-- 439

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             R ++  DI +LV KR     +    R       I  + +    +       +L ++   
Sbjct: 440  -RRLRPSDIAILVAKRFHADKVIEELR----RRGIRTLRSSNENVLCSKEAHELKSVLEA 494

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            +    D         + +F  S +D+        +   + E   K               
Sbjct: 495  MYDPRDTRLVAAAQATRIFGDSLNDLLNNDAASAQARLLLENSAKIYEKSG--------- 545

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
               +I               L    G +   +         + E L+     + N+  SL
Sbjct: 546  ---IIAAVSNLFAGAKTEERLLQYGGERALTN------YQHILELLHQ----QHNTIDSL 592

Query: 548  QELISELEQY----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVF-----LVDTGSQVF 598
            Q L+  L+Q       +       + + VR+ T+H++KGL+  VV+     +  +  Q F
Sbjct: 593  QGLLRWLKQEQKKSNDSYTLRRETDSDVVRVETIHSSKGLQYSVVYYLDRPISFSKGQKF 652

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR--------- 649
                   +    +    P   I     +S   +   + +   +     + +         
Sbjct: 653  RDDATGVITFYETEQKAPDDFIEKSYEESMRLLYVAMTRATARVVLPYFFKKTKNGAPHG 712

Query: 650  -------LLYVGMTRASDQLIICKHSNTSNEKKSNQ--------------------RTWY 682
                   L        S  L I    N   E  S +                     + +
Sbjct: 713  SVGGKNPLAQAISGETSGGLAIIGGLNRLREALSPKEASAREVRKALLDGISEYNKNSAH 772

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             ++      +  +      +        +       PE+  L      KQ          
Sbjct: 773  PLMLSEKALNAYIPFEIRFDFEPGKYGDSEVSFRQPPEHLDLRAGRGEKQNRSWISSSFT 832

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD--------NQTFNRGLIIHKLLQVIF 794
                     +   I + S      +T  ES   D              G  +H+LL+ IF
Sbjct: 833  SLLRTMEAQDSAVITDESEALESEETVAESKEEDVLEVLKGTQSAAEFGTKVHELLEKIF 892

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT----RLLEN------------PMMT 838
                H  KN +  +     K + A E +     I        EN              ++
Sbjct: 893  DKNFHNWKNRVYKFLDDRFKGYVAPETEERKAEIETKTEEFFENLFEAKILPSAPGFHLS 952

Query: 839  TAMS--CDSYSEVSVSGKINCPKKDI-------------------------------IIS 865
                   D   E+     +  P K                                  ++
Sbjct: 953  QLFKNLKDCRPELKFMLSVGAPIKGRERLTASLLAETLTAFDSRYKDFHLSELDMRGYLT 1012

Query: 866  GRIDQISISQQNIFIFEYKTHHH----------VPQEIEHIPY--THIAQLSIYEKILKD 913
            G ID    +    ++ ++KT+             P+ +  +     +  QL++Y   LK 
Sbjct: 1013 GSIDLAFAADGKYWVIDWKTNKIDYRNNTPELYTPEAVNALMKNNHYELQLALYLVALKR 1072

Query: 914  SYPN----------KSLVCLLI-YVSE------PKVFIIPQNKLNKAFAEISTK 950
                          K++   +  ++           F  P++ L +   +    
Sbjct: 1073 MLEVRLNLPEGTGYKAIGGAVYCFLRGIDRNARGTYFERPKDALIECLDDFLKN 1126


>gi|192291516|ref|YP_001992121.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
 gi|192285265|gb|ACF01646.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1]
          Length = 687

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 109/731 (14%), Positives = 213/731 (29%), Gaps = 125/731 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I + +       +S    +       G   +   A+   L       
Sbjct: 69  RRAAAEMTRRVERIARKVLGDRASALSGGLHWAGTFHGIGARLLRDYAERIGLDPGFTIH 128

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++       F+   +    +       +  +   +      +         +
Sbjct: 129 DREDSADLMNLVRHDLGFSRTDSRFPAK--ATCLSIYSRCVNAGQPLDVVLGA-----NY 181

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                     K L A Y EAK+++ VLD++DL++    ++++   +  I        +H+
Sbjct: 182 PWCAGWAAELKQLFAAYVEAKQRHNVLDYDDLLLYWAQVMEEPAFAEEI----SGRFDHV 237

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  V+ +L            +   L  VGD+ Q+IYSF  A  + +L  
Sbjct: 238 LVDEYQDTNALQARVLLAL----------KPNGAGLTVVGDDAQAIYSFRAATVRNILDF 287

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +              ++ L  ++RST  IL+  + V  +       +  +      R  
Sbjct: 288 PKAF-------DPPARVVTLDRNYRSTQAILSAANGVIDLARERFTKNLWTDRAEGSRPL 340

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            +G                                       +  AR I   + +     
Sbjct: 341 LVGVRD-----------------------------------EADQARYIVERVLDAREGG 365

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                        K   VL R    +  +            I  V        D   +KD
Sbjct: 366 ATL----------KQQAVLFRTSSHSAPLELEL----TRRNIPFVKFGGLKFLDAAHVKD 411

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS- 479
           ++AL RF+ +  D ++   ++              +       + +       A    + 
Sbjct: 412 MLALLRFVQNPRDRVAGFRVMLLMQGVGPASAQKALDAMTATADPLGTLTALPAPPRAAT 471

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            ++  +  + EL        P +    ++       +            L +        
Sbjct: 472 DWRGFVAAVQELRS-GDAGWPAEIERALIWYAPHLDRI-HEDAETRRADLVQLAQIA--- 526

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             + Y S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++   
Sbjct: 527 --SGYPSRERFLTELTLDPPDATSDQAGVPTLDDDYLILSTIHSAKGQEWKQVFVLNVVD 584

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                                                         +  EE  RLLYV M
Sbjct: 585 GCMPSDLGTGTS----------------------------------AEIEEERRLLYVAM 610

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA D L +          ++ Q   +     +    ER+  +    S  +    A   +
Sbjct: 611 TRAKDNLHLVVPQRFFTHGQNAQGDRHVYAARTRFIPERLLPLFERTSWPRVTPEAAAAA 670

Query: 716 THHPENTPLER 726
              P      R
Sbjct: 671 QRGPRIDINSR 681


>gi|229542915|ref|ZP_04431975.1| UvrD/REP helicase [Bacillus coagulans 36D1]
 gi|229327335|gb|EEN93010.1| UvrD/REP helicase [Bacillus coagulans 36D1]
          Length = 723

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 96/682 (14%), Positives = 205/682 (30%), Gaps = 139/682 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  +  +   K     P     D +   SL+ E       +               ++  
Sbjct: 75  AAADMKDRFQKLF---PNLPPVDFSTIHSLAFELVRVFFRRTNVPFLLIEGEAGPYQKKK 131

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           +L + +                       +++L++ Q     I+++      +   + S+
Sbjct: 132 ILRNVYRNIHGEKIT--------------EDQLEELQTYISYIKNKMIPPAKWGKVVTSV 177

Query: 128 TLAKYLNAHYEEAKKK---NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
             A  +   YE  KK+     +LDF+D++ + N++ ++      +        +++L DE
Sbjct: 178 PEAARILKEYEAFKKQGTGQLLLDFDDMLTHANEIFRRDP---NLLCMYQGRYDYVLTDE 234

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDTS++Q  ++  L              R L  V D+ QSIYS+ GAEP  +L  K++ 
Sbjct: 235 SQDTSMVQHAIVEKLVR----------RHRNLCVVADDDQSIYSWRGAEPSYLLNFKKVY 284

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                       I+ +  ++RS+ +++T  +      ++    +  +             
Sbjct: 285 P--------DAKILFMEQNYRSSQEVVTTANLFIKRNKHRYDKNMFTENP-------PAG 329

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                                                    A+ +A  I           
Sbjct: 330 PIRFVRLP----------------------------DYKYQAKYLAQNI----------- 350

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMA 423
                     +I VL R    +           +   I     D       H  ++D++ 
Sbjct: 351 ---VVSENFSEIAVLYRNNMSSI----ALINEFDREGIPFYLKDTDNRFFSHWVVQDILN 403

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCGISKF 481
           + R   + +       +        ++  +  +   R+               +  + K 
Sbjct: 404 VMRLTFTDKRADILAQVHSKLDGYITKQQMEAVKGIRNNQSVFDNLVRYANLKDYQVQKV 463

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRN 539
           + V + + E+  +     P D   +I G     +   +  +      + L   LN     
Sbjct: 464 RKVKETLREMRGM----PPLDAIHVIRGRLGYEKALENMCKKFGFRKEYLIGVLNTLEDI 519

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 +++E  + L+     +K A      + V + T H++KGLE   V+++D    + 
Sbjct: 520 ADT-LVTMEEFAARLKHLAHILKTAKGNKGRHAVTLSTFHSSKGLEFEKVYMIDLVDGII 578

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                 +       EE  RL YV MTRA
Sbjct: 579 PGDD----------------------------------EKENDLLMEESVRLFYVAMTRA 604

Query: 659 SDQLIICKHSNTSNEKKSNQRT 680
              L +  +   +  +  +   
Sbjct: 605 KKSLEMVSYEKRNGSRTMDSPF 626


>gi|162451111|ref|YP_001613478.1| exodeoxyribonuclease V beta chain [Sorangium cellulosum 'So ce 56']
 gi|161161693|emb|CAN92998.1| Exodeoxyribonuclease V beta chain [Sorangium cellulosum 'So ce 56']
          Length = 1347

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 144/1104 (13%), Positives = 300/1104 (27%), Gaps = 177/1104 (16%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
             R  +S + +              + + +      +        L +         +   
Sbjct: 234  RRLAVSDHAAEAGALARELRRLAAESAALGSAAFRAPAAALAAALGREDGGAPFPASAAS 293

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
                 LL+     +  +   +       +  P   E  +    + +          + + 
Sbjct: 294  APLIELLTQRKPHKSKSTPADEALIAFREALPG--ETHRDKAQQLLGFL--REAPALSRR 349

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                + L + +       ++    L F DL+    D L+       I   +   ++ +L+
Sbjct: 350  EARIVELLEEIRERLSAIRRTEGGLGFGDLLRAARDGLRDDPA---IGAAVRGSVDVLLV 406

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSS---------PRTLFAVGDEKQSIYSFHGAE 233
            DE QDTS +Q +++  L E      +  +             LF VGD KQSIY F GA+
Sbjct: 407  DEFQDTSAVQRDLVYLLRERDDAALSRPAGVAPTAAGLSGHGLFLVGDRKQSIYGFRGAD 466

Query: 234  PKRVLREKRINQKRATN-----------AGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
                 R        A                    + L  S RST ++L  ++   +   
Sbjct: 467  VSIFCRVCAELAGAAAGRALELAPALWSPDPSADFVALRESRRSTPELLAFINAFSARDF 526

Query: 283  NAQGLSEDSTTTIRHRSSRI--------------GQVGTVQLWEQVVSQHDSQCNPQQES 328
                 + D     R   S                   G        V             
Sbjct: 527  AQDRGAGDGDAGAREVGSPPREFEIAYSAAEHLVAAPGRAAEGPTNVVLVSDGGGAPDGV 586

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV-IQAKDILVLVRKRKDTP 387
                 D+  Q   A I A  IA  +    G      +G     ++ +D+ VL R+R   P
Sbjct: 587  DALVRDARGQLREALIAAAYIARRVRGAGGDGAAGGDGAATGDLRFRDVAVLTRRRSTIP 646

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            L+      L+    I  V   R  L D   ++DL A+ R +L   D L+   +L+ P+  
Sbjct: 647  LVELALARLE----IPYVVAGRA-LFDAAEVRDLAAILRLLLDPRDRLALATVLRGPVVA 701

Query: 448  FSEDDIFKI-----------------------------CTQRHETETVYEYIQKFANCGI 478
             S+  +  +                                  +       + +      
Sbjct: 702  LSDTSLALLAPPGRGLAVPLLGRWPAAALAQGVWSPSPDDAELDDGRPLPVLARLPAGDR 761

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTL 537
             + +        L   A   +P +     + A    +   +    +     +D  ++   
Sbjct: 762  ERLEAFRARYAGLRRAALRSTPGEAIRAAVTAFDLDRVLAALPRAQARLGNVDRLVSIAR 821

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSA-----NHNEVRIMTVHTAKGLESPVVFLVD 592
            R       SL   +  L++          A       + VR+ T+H +KGL+ P V L+D
Sbjct: 822  R----RGGSLASFVRWLDRRIRDEADEPEAAVFSPEDDAVRLTTIHASKGLDFPAVVLLD 877

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS----------------------RNN 630
              ++  + +                +     +                            
Sbjct: 878  LNAEPRASQPGLSYVPAAGDRPAALLVRHYARIVDGRSRTGSLHDAEASARGPSFPVSTP 937

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS--NQRTWYDMVYDS 688
             +      ++   + E  RL YV +TRA  +L++           +    +   D    +
Sbjct: 938  ALQAARAEVRARERAERQRLTYVAITRARRELVLVGAEAKPRSGSAWLTLKAAVDAEPRA 997

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD------------- 735
                +   +I   +   +   +A         ++ L   +      D             
Sbjct: 998  AAAVDAEPRIAAADVGVEAPTLAGTLRATLDASSLLAGAKAPAPGTDAYARAAPAPRAPP 1057

Query: 736  -------------------EQKIPKKLFSPIKNDINEPY---ILNPSTIDTKGKTNLESL 773
                                Q  P++        + EP     L    ++   +   E  
Sbjct: 1058 AIGPARAQTVLVAAASLAAFQACPRRFRLRHLLGLGEPAGEGQLGLFDVEGPPELPGEER 1117

Query: 774  LSDNQTFN---RGLIIHKLLQVIFTLP--EHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
            +      +    G  +H++LQ        E      + +            +       +
Sbjct: 1118 VELEDGADPRPPGRAVHRVLQRWPRARWGEPTEPQDVAARLAFEGFPPHGPDVLRTAERV 1177

Query: 829  TRLLENPMMTTAMSCDS--YSEVSVSGKIN------CPKKDIIISGRIDQISISQQNIF- 879
             R L+ P        ++    E ++   +            + +S  ID   +    +  
Sbjct: 1178 ARFLDGPYARQVRGEEASLLREEALVLDVEPQRAGRRRGARLALSLAIDLAVLHPGGLID 1237

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE---------- 929
            + EYK               +  +L      L+  +P++ +   +++V            
Sbjct: 1238 VVEYK-----RARPRADLSPYELRLRACALALRRRHPDRPVRAGVLFVGAEVEPVWLAAS 1292

Query: 930  ---PKVFIIPQNKLNKAFAEISTK 950
                 +      +  +  A ++ +
Sbjct: 1293 GPLGTLTDDEHARFERELARLAER 1316


>gi|323354422|gb|EGA86261.1| Srs2p [Saccharomyces cerevisiae VL3]
          Length = 1143

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 97/623 (15%), Positives = 181/623 (29%), Gaps = 139/623 (22%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
               Y    Y+    K   LDF+DL++ T  LL         R ++   I H+L+DE QD
Sbjct: 198 AALGYFYQIYQSELSKKNTLDFDDLLMYTFRLLT--------RVRVLSNIKHVLVDEFQD 249

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ +++      F   K  H   R +  VGD  QSIY+F  A     L   R     
Sbjct: 250 TNGIQLDLM------FLFAKGNHHLSRGMTIVGDPDQSIYAFRNALAHNFLEMGRKCPIE 303

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            +        I L  ++RS+  IL   + + +        ++        R+        
Sbjct: 304 YS-------TIILVENYRSSQKILNTSEILITQQ------NKGRQNRAPLRAQFDLDFPP 350

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V +                                              +  + ++    
Sbjct: 351 VYMNFPAYFLEAPS-----------------------------------LVRELLYLKAL 375

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             +    D  +LVR+R+    I         +++I           D    + ++ L + 
Sbjct: 376 PNLFTFNDFAILVRQRRQIKRIESAL----IEHRIPYKIIRGHSFWDSKETRAMLNLLKL 431

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------ETETVYEYIQKFAN 475
           I S  D  + +  L  P          KI                 +  +  + +     
Sbjct: 432 IFSPNDKHAILASLLYPARGLGPATGEKIKNALDTLATDVSCFQILKDISSKKIMLDIPT 491

Query: 476 CGISKFQHVIKYIHE---LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE- 531
            G S     I  I     L+         D F  +      + +++ + G +  D L++ 
Sbjct: 492 KGRSVIADFISMIENCQLLLQSTLLGGLSDLFDKLYELSGLKYEYLYKDGKKKNDQLEKS 551

Query: 532 ------------------FLNFTLRNEQNS------------------------YSSLQE 549
                             FL    ++E +                            L+ 
Sbjct: 552 EPNLLNARHKNIELLKNYFLALLSKSESSDKEKNEAIKAATDEAEPIENKVITPKEYLRN 611

Query: 550 LISELEQYPPTIKRAHS----------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             + L  +    +   S            +  V I T+H AKGLE PVVF+      +  
Sbjct: 612 FFNSLSLHSDAAEEEESESNKDAKIKREKNGFVTISTIHGAKGLEWPVVFIPGCEEGIIP 671

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      ++         ++  ++           + + +E  R+ +V  TRA 
Sbjct: 672 -----CVFNDDKKDESEEDEEEDQENSKKDASPKKTRVLSAEDSIDEERRMFFVAQTRAK 726

Query: 660 DQLIICKHSNTSNEKKSNQRTWY 682
             L +       +  +    + +
Sbjct: 727 YLLYLSNTVTVEDVDRPRIASRF 749


>gi|149916945|ref|ZP_01905446.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis
           pacifica SIR-1]
 gi|149822223|gb|EDM81614.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis
           pacifica SIR-1]
          Length = 1027

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 122/804 (15%), Positives = 254/804 (31%), Gaps = 65/804 (8%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYF--QVSDINKYVSLSMETGNPTILK--KAQTLQQASQ 58
               +  +   +  +              ++ + ++L  E+    +    +A  ++    
Sbjct: 218 RSLLVDADGRAQRGFDRAMARAELGDACEELGEALALLRESKEDRLRPTLRALAIEDDRI 277

Query: 59  TQCIEERFSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
             C     +      +      + K  + +   +         ++ QD    + +     
Sbjct: 278 GGCEAHAVARWYPALVRVASQRRGKGTLPKRAKRVWEPFAAAWERVQDAVASLGEIDLAQ 337

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           ++       + L + L+  Y   K +   +DF DL+   +DLL+   V   +R ++ + +
Sbjct: 338 RV-------VALLETLSRAYAAEKARVGAMDFADLVRGAHDLLRDDRV---VRAQLQRRV 387

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS----------PRTLFAVGDEKQSIY 227
             +L+DE QDT+ +Q +++  L E+    +                RT  AVGD KQSIY
Sbjct: 388 GALLVDEFQDTNGLQLDLVHLLAEERSQQRAVPRGARASACLPLAARTFAAVGDRKQSIY 447

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA+        +    RA    +   +  L  S+RS   ++   + +F     +   
Sbjct: 448 EFRGADVALF----QSLAARARAGEEGLRLAALRRSWRSRPGLVRFANALFDQLLISDDP 503

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +  +   I    +        +L   + +      +P Q++       + +   A+ LA 
Sbjct: 504 AGFAVDWIEEVDALSPVREDHELQAGIPAVQLLIGDPSQDA------RVRRGHEAARLAE 557

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I+           G  + ++  D+ +L+R            R   ++  I+ V  
Sbjct: 558 HVERLIAARPPLGRADREGTPQPLRGADVAILMRTHGHVARY----RRALSERGIASVVV 613

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                     +++L+AL   I    D L+   + +SP++   +D +  +          +
Sbjct: 614 GGRGFFAAREVRELVALMLAIADPGDALASAAVWRSPVWGIDDDSLVALAVADAVAMRHH 673

Query: 468 ---EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGN 523
                ++       +   H+ + +  L H      P       +     R+       G 
Sbjct: 674 VEGCGVEGLPTRDAAAVTHMGRLVDRLHHELDRLGPARVLRFAVDRLGVREVLAWDDAGE 733

Query: 524 EVIDVLDEFLNFTLRNE------QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
           + I  +D+ L+     E      Q +   L E   +L       + A +A+ N VRIMTV
Sbjct: 734 QRIANVDKLLDLLGSREFAGVGAQAAARRLLERGEDLLDREAPAEVAAAADPNAVRIMTV 793

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE PVV L + G++    +             + G+ +  P S    +      +
Sbjct: 794 HASKGLEFPVVVLPELGAEPRGQEGPVVF------ERELGLAVISPTSWVGVDPAPTPRR 847

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
               S      R+     T           S     +    R                 +
Sbjct: 848 SASASRPAATPRVG-ACSTSPRPGPGTSWCSWVKRPRGGPARAT---------GGGSSTR 897

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
              ++S       +   +   P      R     +        ++   P           
Sbjct: 898 PCPSSSGAAARASSSSSTRARPSTRTRARPPKTARWPGCSSAWRRCARPRAAGEGSRSRT 957

Query: 758 NPSTIDTKGKTNLESLLSDNQTFN 781
            P    T  +   E          
Sbjct: 958 RPGRSRTGSRPRTEPSSLRPNRAE 981


>gi|297619071|ref|YP_003707176.1| UvrD/REP helicase [Methanococcus voltae A3]
 gi|297378048|gb|ADI36203.1| UvrD/REP helicase [Methanococcus voltae A3]
          Length = 1085

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 106/593 (17%), Positives = 190/593 (32%), Gaps = 135/593 (22%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N ++D+ D+I    +LLK+  V   I+ K+    ++IL+DE QDT+  Q ++I  L ++ 
Sbjct: 206 NGLIDYNDMISIVCNLLKENTV---IKKKLQDRYDYILVDEFQDTNFAQLDLITKLVKND 262

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                       L  V D+ Q IY F GA    +     I              I L ++
Sbjct: 263 -----------NLTCVADDDQCIYRFRGAYLTNIKELNYIYPA--------LEKITLDVN 303

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST +I+ +  ++     N +                              S+      
Sbjct: 304 YRSTDEIVELSKELIQNNPNRENKE---------------------------SKAHDGNG 336

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            + +   +  D           A  +A  I  +I T            + KDI +L R  
Sbjct: 337 EKIKILKTPDDYSE--------AEWVAEEIEKLISTKNDDDL----TYEPKDIFILTRTI 384

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
           KD    +   +    +  I         L +   IKD++A    + +  +       + +
Sbjct: 385 KDGKKYSEALK----NRMIPSEYIGNHNLQEQPIIKDVLAYINVVSNPFESGVDFKRIFT 440

Query: 444 PLFNFSEDDIFKICTQRHETET-------------------------------------- 465
                 E DI KI  +  E                                         
Sbjct: 441 -REGVDEHDIQKINQKAKELSYKNAEGDGIYYTLQMLYTNEYNEYNEYNKDNKDNKDNNE 499

Query: 466 ----------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                              +        + + I ELI   +   P D    +L  K    
Sbjct: 500 ELDTLTNSNVDLNLNLDLEDKNKDILLKIFENIKELICYKKNHKPSDTLIYLLNKKTDIY 559

Query: 516 QFISRFGNEVID----VLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHS-ANH 569
           +  +    ++      +L+  +N     E+ S    + +   L       I++ +   N 
Sbjct: 560 KIEAYNDTKLSRKNIHLLNSLVNVVEDFEETSNLEFENISEYLNILSNLEIQQENEFDNS 619

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           N V+IMT+H +KG E+ VVF+ D   +    ++  K   +P       I   +P+ +   
Sbjct: 620 NTVKIMTIHQSKGKEAKVVFIGDLADRHLPLRYNSKEFTVPVELMKSRIKNNVPEKELHK 679

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                              RLLYV MTRA  +L +      +  K+  + + +
Sbjct: 680 EEEL---------------RLLYVAMTRAMKKLYLVYPKRYTGNKRDVKPSEF 717



 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 69/218 (31%), Gaps = 18/218 (8%)

Query: 747  IKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTL-- 796
            +   +N     +PS I       L                 F+ G  +HK+ +++     
Sbjct: 837  LPPLVNPDMAFSPSKIVDYDSCPLMFKYKNVLSIPTPKKSYFSVGNTVHKIFEILGDKKI 896

Query: 797  -PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGK 854
              E        +   +N K             +T  L           +     +SV  K
Sbjct: 897  NDERITIEMAQNMLLENLKEQDFDSKTEYDEQMTNCLNMLNYWFEFEKNNVDKIISVEEK 956

Query: 855  INCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             +    +  I+G ID+I  +   N  + +YKT      + + +      QL IY   +K+
Sbjct: 957  FSINLCNHTINGIIDRIDKTTDDNYIVLDYKTGKTALSKNKLLNN---IQLIIYAIAVKE 1013

Query: 914  SYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
             Y    +    IY +  K  I+  +       EI   I
Sbjct: 1014 KYGKYPIQIGHIYPAIAKSVIL--DIEESKIEEIKQNI 1049


>gi|310829938|ref|YP_003962295.1| UvrD/REP helicase [Eubacterium limosum KIST612]
 gi|308741672|gb|ADO39332.1| UvrD/REP helicase [Eubacterium limosum KIST612]
          Length = 724

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 95/576 (16%), Positives = 175/576 (30%), Gaps = 110/576 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   YE  K+++ ++DF+D++     LLKK      +      +  +I IDE QDTS IQ
Sbjct: 176 LFKAYEAYKRRHHLMDFDDMLKYAWLLLKKNPELLKV---FTSQYKYINIDEAQDTSKIQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+IR L+ +             +F VGDE QSIY F GA P  +L  K           
Sbjct: 233 YEIIRLLSGED----------GNVFMVGDEDQSIYGFRGAYPDGLLSFKETYPH------ 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ +  + RST +I+   ++   + +                     + G   + E
Sbjct: 277 --GEVLLMETNHRSTQEIVNAANRFIRLNKERYVK----------NMRTDNEKGVPAVHE 324

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            V S  D         W        +    ++L                           
Sbjct: 325 YVKSVEDQ-------YWFILKSVKNEGKETAVL--------------------------- 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQ 431
                   R  +    +  L         +     +       H  ++D+ +        
Sbjct: 351 -------YRNNESVIPLVDLFE----REGVPYAVKEHNPLFFTHFIVQDIRSFAALAADP 399

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D  +F  +      N S  ++ +        + V+E +              ++ I   
Sbjct: 400 SDFETFEKIYYKMNCNISRKNVLEAGKLSESGQDVFEALLSLD-EIPEWLVEKVENIRAA 458

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                  S  +    I+     R+    R       + L++ L+          S++   
Sbjct: 459 FKRLASMSAQEGLDFIVWNMGYREHLDYRVSCGYREEQLNQKLDILKTLAGRE-STMNAF 517

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           +  L+     ++ +      +V   T+H++KGLE   VF++D     F            
Sbjct: 518 LKRLDVLQEALRGSALHQKADVTFSTIHSSKGLEFEKVFIIDAVEGEFPSMAALDD---- 573

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                         +    E  RL YVG+TRA  +L        
Sbjct: 574 --------------------------SEEGRRLFCEEVRLFYVGVTRARRELEFISVGKK 607

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           ++       + +  V+      E  +K      I +
Sbjct: 608 NSRHNRRPVSQFVRVFLGEKAPEAARKKITGGVIGE 643


>gi|326435120|gb|EGD80690.1| DNA and RNA helicase [Salpingoeca sp. ATCC 50818]
          Length = 1191

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/605 (15%), Positives = 176/605 (29%), Gaps = 136/605 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                  Y+   + +  +DF+DL+I  N LL+                 HILIDE QDT+
Sbjct: 284 TATFLQPYQRHLQNHGFVDFDDLLIKFNQLLEDHPHVTRFC-------QHILIDEFQDTN 336

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           ++Q+ +   L  +             +  VGD  QSIYS+  A+     + KR       
Sbjct: 337 VVQYSIATKLAANA-----------NITVVGDPNQSIYSWRQAQADGYRKFKRDF----- 380

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RST  I+ +             L   S    +  +S  G    V 
Sbjct: 381 ---AGCQVVGLGRNYRSTEAIVQL-----------SSLCLASQRDTKFWTSNGGGPPVV- 425

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                         +S    AR IA   + ++ +          
Sbjct: 426 --------------------------FATYNSPMHEARSIAKETARVLQSAKG------- 452

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I   +I VLVR    T  +            I  V        D   ++D MA  + + 
Sbjct: 453 AITFSNIAVLVRTNAMTRSLEQAF----THVGIPYVIVGGLKFFDRAEVRDCMAYLKLVH 508

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFAN---------CGIS 479
           +  DD+S   ++ +P        +  +         ++++ + K                
Sbjct: 509 NLHDDISLARIINTPKRGAGPKLMEALEANALRNHCSLWDALTKGLQAKRGAPDRIKCPR 568

Query: 480 KFQHVIKYIHELIHIAQFCSPHD--FFTLILGAKKGRQQFISRFGNEV---IDVLDEFLN 534
             +  +  +  LI   Q            IL   + ++   S          + + E L 
Sbjct: 569 PTRAALGSLVALIRKHQQGDHSATHVLLDILKQVQYKEHLESTDKATAASKWENVQELLA 628

Query: 535 FTLRNEQN--------------------------------------SYSSLQELISELEQ 556
            T   E                                           +L++   + + 
Sbjct: 629 LTREFEHESHSGNPNDGGDGAGAGGGDGDDDDGVKAEEEEEQQQRGEDDNLKQQQQQRDD 688

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLES-PVVFLVDTGSQVFSHKHIKK---MHIMPSL 612
                      + ++        +K       V L  +  ++  ++  +    +  + S 
Sbjct: 689 DASDTDDDDDDDDDDDDDDDGDMSKLSSFIEHVSLYASSDKLERNQSRQDCVTLSTIHSA 748

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKS----TQEEYNRLLYVGMTRASDQLIICKHS 668
                  +++P  +      S  +  ++K       +E  RLLYV +TRA   L + +  
Sbjct: 749 KGREWAVVFVPGVEDGVLPHSHALDEVQKKGDSSRLKEERRLLYVALTRAKYYLHMSRCL 808

Query: 669 NTSNE 673
                
Sbjct: 809 WRGGA 813


>gi|260576875|ref|ZP_05844858.1| UvrD/REP helicase [Rhodobacter sp. SW2]
 gi|259020912|gb|EEW24225.1| UvrD/REP helicase [Rhodobacter sp. SW2]
          Length = 850

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/691 (13%), Positives = 186/691 (26%), Gaps = 106/691 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y++  +     DF DL+++   + +       +  +  +   +IL+DE QDT++ 
Sbjct: 195 ELYQMYQDRLRALNATDFGDLLLHVVTIFQTHPD---VLAQYQRWFRYILVDEYQDTNVA 251

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R L +          + R +  VGD+ QSIY + GAE   +LR ++         
Sbjct: 252 QYLWLRLLAQ----------AHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFP------ 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  IL     V +  +   G +                     LW
Sbjct: 296 --GAHVVRLEQNYRSTPHILAAASAVIAANKGRLGKT---------------------LW 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                    +   ++     ++D   +       AR I   +  +               
Sbjct: 333 -------TEREAGEKVRLIGHWDGEEE-------ARWIGDELEALQRGTRAMD-----PH 373

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+ +LVR                    +           + L I+D MA  R  +S 
Sbjct: 374 SLDDMAILVRASHQMRAFEDRF----LTIGLPYRVIGGPRFYERLEIRDAMAYFRLAVSP 429

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------TETVYEYIQKFANCGISKFQHV 484
            DDL+F  ++ +P     +     I  +                        G ++ +  
Sbjct: 430 ADDLAFERVVNTPKRGLGDTAQQNIQRRARAAGVSLLGGARELLAQGGIGGKGANQLRTF 489

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAK---------KGRQQFISRFGNEVIDVLDEFLNF 535
           +       +                             R+  +    +E  + ++  +  
Sbjct: 490 VTSCDAWHYFVANRGNELEIKRYADQLFVLREERSRLLRELELLDENDEARESVEREIVI 549

Query: 536 TLRNEQNSYSSLQELI--------SELEQYPPTIKRAHSANHNE----------VRIMTV 577
                      +  L           LE+   T                     V+ +  
Sbjct: 550 CGARIGRCERDIAILDGNHVLLAEQILEESGYTAMWQADKTPEAPGRLENLKELVKALEQ 609

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
                     V L+   ++         +  + +        +++P  +         + 
Sbjct: 610 FENLQGFLEHVSLI-MENESEEAAEKVSIMTLHAAKGLEFPVVFLPGWEDGLFPSQRSMD 668

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA     I   +N    ++   +    +             
Sbjct: 669 ESGLKGVEEERRLAYVGITRAEALCTISFAAN----RRVYGQWQSALPSRFIDELPEAHV 724

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK-NDINEPYI 756
             LT                         +             K++        + +P  
Sbjct: 725 EVLTPPGLYGGGYGAAGMQAGFGGGSGIEQRAASADAYNSPGWKRMTERAPTRPMAQPRE 784

Query: 757 LNPSTIDTKGKTNLESLLSDNQT-FNRGLII 786
              S ID    ++           F  G ++
Sbjct: 785 ARNSVIDLDAISSFTLDDRVFHAKFGYGTVV 815


>gi|308183694|ref|YP_003927821.1| putative recombination protein RecB [Helicobacter pylori PeCan4]
 gi|308065879|gb|ADO07771.1| putative recombination protein RecB [Helicobacter pylori PeCan4]
          Length = 945

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 128/865 (14%), Positives = 266/865 (30%), Gaps = 169/865 (19%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T    +  +   +    LK ++   + E  +I +    Y   + T         
Sbjct: 243 FLNSSLTW---LEKKSEYQSFKKLKNEIPTLESECEEIENDLKRYYEARETAIFKKF-PK 298

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 299 FIQLYDKATSKIQALDFDAIKDKVHALLNGYEELPAEFFYFRLDSKIAHILIDEFQDTSL 358

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY+F G+                 +
Sbjct: 359 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS-----------FSSLFES 407

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS   I+  V+ +F         +       +   ++    G V++
Sbjct: 408 VSKDFYHDNLQFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKTSQNKHAADGYVKV 467

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  ++     N++             
Sbjct: 468 SLVA-------------------------DEKELLLSQVLQEAQNLLDH----------R 492

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L    KD   I    +   +    S   + R        I            
Sbjct: 493 IDPKDITILCATNKDALEIKNYLQEYLSAICPSTESSTRLSQLVESKIIKNALEYALAEE 552

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD+  +     + E+                         
Sbjct: 553 PYKPFYKHSVLK--LAGYLHDDVIALAGFNPKKES------------------------- 585

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       F   ++   +   +                L   +  E          
Sbjct: 586 ---------VASFVWKVMELFELYGEPAQSC-----------LELAVGCEDAD-----GF 620

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + +LE          S++    +IMT+H +KG++ P V + +      +  H  ++    
Sbjct: 621 LEKLEAKSI-----ASSHSKGAQIMTIHKSKGMQFPYVIVCE-RLGKPNSSHSNQLLEEY 674

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 675 DGAELLRLYYRMKNREVVDKDYARALYKEEAAKDHEETNVYYVAFTRAELGLIVVAKDKK 734

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            ++K+S  +T  + +      +  +  +           +  +   +  +   +E E   
Sbjct: 735 ESKKESKNKTMREQLDLVPLEEGEIMPVISHQKEPLITSVVIKPHAYGEQVQEIEEE--- 791

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                                       PS  +            D +  N G+ +HK L
Sbjct: 792 ----------------------------PSDYEKNN---------DQEAINFGIALHKGL 814

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
           +       +  K  +  Y   +   +   +Y+ L  S+     +  +       +     
Sbjct: 815 EY--QYAYNIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQALFKNHALR--- 868

Query: 851 VSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
             G+     + ++   RID +   +   +++ +YK+  +          +H AQ+S Y +
Sbjct: 869 --GEAAFLFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSHKAQVSHYAE 917

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFI 934
            LK   P+  +   +IY +  ++  
Sbjct: 918 FLKTQAPHFKIQAGIIY-AHKRLLE 941


>gi|163839981|ref|YP_001624386.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
 gi|162953457|gb|ABY22972.1| ATP-dependent DNA helicase [Renibacterium salmoninarum ATCC 33209]
          Length = 1073

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 127/1003 (12%), Positives = 277/1003 (27%), Gaps = 167/1003 (16%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS--------METGNPTILKKAQT 52
            L++     L+ +        W    F +    +   L         + +G    L   + 
Sbjct: 86   LRDALSARLDRTVSTSPARSWASYAFDILRRAQAEGLVPNADRVPKLISGPEQDLFIREL 145

Query: 53   LQQ-ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK-- 109
            L   A       +    L    LT+                    ++++++  D  +   
Sbjct: 146  LAGHALGLAPGPQWPEELHEALLTR------------------GFRQEVRQLFDRIVDNG 187

Query: 110  IRDRFNTYKMFKSTLASLTLAKYLNAHYEE--AKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            +          ++       A  L   Y +    K     D   ++   ++L    D + 
Sbjct: 188  LLPSDLVELGRENNRPDWQAAAQLYREYRDLIELKNPGCYDPAGIVRAASELF---DANP 244

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
                +  +  + IL+D++Q+T      ++R +            + + + A       + 
Sbjct: 245  DWLARERERHSLILVDDLQETGRAVHGLLRRI-----------GTGQEMLATACPDTVVQ 293

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F GA P RV   +              +   L  S R    +     ++      ++G 
Sbjct: 294  GFRGARPDRVGLVRDELG---------ANEAVLSSSHRLNQPLAAAWLRIAERIAQSKGG 344

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
             +                             +    P+ E   S             +A 
Sbjct: 345  HKARQ--------------------LDFPADEPTVGPESEQVVSGVVVGSDVQQRRFVAE 384

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            RI +                 R    +D+ V+VR                  + I V  +
Sbjct: 385  RIMH-------------FHVDRERPLRDMAVIVRTGAQVAAFGRYL----VSHGIPVRIS 427

Query: 408  DR-FILTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQ----- 459
                 + D  A++ L+   R  ++ E   + + +  L S +   S   I ++        
Sbjct: 428  AAETPVRDEPAVRPLLLAYRVAVTPELLDAELAVDLLTSRIGGLSSVQIRRVRKLLRAEE 487

Query: 460  ------RHETETVYEYIQKFAN----CGISKFQHVIKYIHELIHIAQFCS---PHDFFTL 506
                  R   E + E +Q+ A         +    +  +      A       P      
Sbjct: 488  IANGGVRGSDELLVEGLQRPAQLAALGVDGRAAARMATVLAAGSQAMTEPGANPQSVLWA 547

Query: 507  ILGAKKGRQQFI------SRFGNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISEL-- 554
            +  A     ++          G+     LD          R  EQ+  +S +  +  L  
Sbjct: 548  LWDATGLSTEWATAALREDANGSRADRDLDAMMALFQAAERYVEQSPAASPEAFVEYLLN 607

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            ++ P     A + + + V +MT  +A G + PVV +      V+ +  ++   +      
Sbjct: 608  QELPMDTLAARAESGDAVEVMTPASAAGRQWPVVIVAGLQEGVWPNNRLRGELL------ 661

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                 +         +          +  + +  R     ++RAS++LI    S+   + 
Sbjct: 662  -GSQYLVEVLELGAASARRLAAVQRMRDIRYDELRSFATAISRASERLICVGVSSEDEQP 720

Query: 675  KSNQRTWYDM-------------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
                                   V         V +++  N    +E  + + +      
Sbjct: 721  SGFLDLVDPWPIEDNDGLRPLTDVRRPKTLRALVAELRQANERGANERDSDDRAEQPAAE 780

Query: 722  TPLEREETIKQLMDEQKIPKKL------FSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                  E  +  +                +     ++    ++PS I+   ++ L   L 
Sbjct: 781  AARVLAELARNAVPGADPSSWWGLAPLSSTDPILPVDAVVPVSPSKIEAVHESALSWFLQ 840

Query: 776  DNQ-------TFNRGLIIHKLLQVIFTL-PEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                        + G +IH + Q +     E         +      L    E    L  
Sbjct: 841  AAGGEAQLDLARSLGTLIHGIAQDLPAGNAEELLAELANRWPAL--GLPENWETAAQLRR 898

Query: 828  ITRLLE-NPMMTTAMSCDSYSEVSVSGKINCPKKDIII---SGRIDQISIS-QQNIFIFE 882
              R+L         +S   +  V V            I    G +D++ ++ +  + + +
Sbjct: 899  AERMLRKLAGYLRLISAQGHELVGVEQGFGIEVPGARIAALKGIVDRLELTAEGTLIVVD 958

Query: 883  YKTHHHVP--QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
             KT  + P   ++E  P     Q++      +   P  S+   
Sbjct: 959  LKTGKNKPTAAQVEQHPQLGAYQVAAKHGAFEQIAPTASVGGA 1001


>gi|269218749|ref|ZP_06162603.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 848 str.
            F0332]
 gi|269211860|gb|EEZ78200.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 848 str.
            F0332]
          Length = 1158

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 137/1046 (13%), Positives = 265/1046 (25%), Gaps = 188/1046 (17%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G            + + L    V++      ++   G   I++ A  L  A+        
Sbjct: 142  GADPTARLVT-DAERFQLMDSVVAEGAVDPDVASRHGRARIVEVALCL--AAGGIDNGVS 198

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               +   F   +    + +          D+ +   +S +   +++  +         L 
Sbjct: 199  VERMRE-FFEGEAAALERLGKDPRRFTKGDMADAGMESAEW-ERLKRDWRALAKADFALQ 256

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               L       Y E K+   +++F D +   +++L +      I  +       +L+DE 
Sbjct: 257  LACL--PAVEAYMERKRSLGLVEFADQVATASEVLGRYG---RIGEETASRHRLVLLDEY 311

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDTS+ Q   +R                R++ AVGD  Q+IY + GA    +        
Sbjct: 312  QDTSVSQAVFLRR-------ALGGAGEGRSVCAVGDPNQAIYGWRGASANALADFAVAF- 363

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                        + L  SFRS A IL   + V      A  L E +    + ++      
Sbjct: 364  ----AGEAPVRRLTLSTSFRSDAAILDAANAV------AAPLDEAAAGVRKLKARPGCGP 413

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
            G V     + ++                             R IA  + ++         
Sbjct: 414  GRVVEARPLFAEDS--------------------------YRAIARRVEDVQAEVARTRA 447

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             +       +I VL RKR     +    R       I+        L +   I  + A  
Sbjct: 448  AQP------EIAVLCRKRSSIERVADALRE----RGIAYEIVGGESLIERPEIVTVRAAL 497

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK------------- 472
              +         V +L             +  +      +V +                 
Sbjct: 498  GVLARPSHGGLLVRLLLHWGVGSDAMRALREWSWELARRSVGDAPLDPRAEAGLVEAVSR 557

Query: 473  -------------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR--QQF 517
                           +    +   V K +  L   +      D     +           
Sbjct: 558  LPDPEWVGSRGLALDSAAFDRLSLVSKSLASLRS-SVHLPLADLVEKCISQLGLDLAAAS 616

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANH------- 569
             +     V   LD F+            +S+++ +  L+                     
Sbjct: 617  RAEGSQRVRTSLDSFVALARGYSAVHPGASVRDFVDWLDLVERHEYGGEEEAGIDASEEV 676

Query: 570  ----NEVRIMTVHTAKGLES-PVVFLVDTGSQVFSHK-------HIKKMHIMPSLNDDPG 617
                  V+I+TVH AKGLE   +V + +  S  FS K           +   P   D   
Sbjct: 677  EVHAGVVQILTVHAAKGLEWRDLVAIPEMVSTQFSEKESGKSWTTDPSVFPFPLRADRAH 736

Query: 618  IPIWIPQSKSRN-----NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
            +P + P   S            L   +      E  RL YV  TR   +L +  +   + 
Sbjct: 737  LPRFRPSDFSEKLDAALAYSRFLRADIPAHENAEARRLAYVAFTRPQAELFLAGYGLAAK 796

Query: 673  EKKSNQ--------------------------------RTWYDMVYDSFHNDERVKKIKL 700
            E   +                                   W   + +       + +   
Sbjct: 797  EIPPSFVEGDAVSLLPRSVFLDDVRKGAGVLPAADVAGPEWPPELTEECPATMPLAEATE 856

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                  +  I Y  +        + R         E                 P  +   
Sbjct: 857  RTGGPPEPVIDYANADLPLWPADVVRAGPGAGHASEPGGSGGGSGDSGESPAPPERVAMW 916

Query: 761  TIDTKGKTNLESLLSDNQTFNR-----GLIIH------KLLQVIFTLPE------HKRKN 803
                          S      R       ++H        L               +   
Sbjct: 917  RRSADLLIREREAASRPAVPERPYVTATDVVHLNEDPAAFLAQWRRPTPQRPSRAARTGT 976

Query: 804  FITSYCTKNAKLWPAKEYKNLLLS--------ITRLLENPMMTTAMSCDSYSEVS---VS 852
             + S   +  +     +  +++          +    E   +  A     ++ +    V 
Sbjct: 977  EVHSRIAEFYERPARLDIDSVMAQGEQPVDMDVLTREEEARLLEAFRASRWARMPAIAVE 1036

Query: 853  GKINCPKKDIIISGRIDQISI---SQQ--NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
              ++      ++   ID +             I ++KT      E          QL+IY
Sbjct: 1037 ESLSAVIGGRVVRCTIDAVLDTSAEPGLSEATIVDWKTGRRPDGEALASRE---LQLAIY 1093

Query: 908  EKILKDSYPNK--SLVCLLIYVSEPK 931
                  ++      +    +Y+ EP+
Sbjct: 1094 RLAWARAHGRDIADVGACFVYLREPE 1119


>gi|315452894|ref|YP_004073164.1| DNA helicase [Helicobacter felis ATCC 49179]
 gi|315131946|emb|CBY82574.1| DNA helicase [Helicobacter felis ATCC 49179]
          Length = 926

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 128/896 (14%), Positives = 267/896 (29%), Gaps = 194/896 (21%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCI-EERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95
           L++      IL++A+TLQ     +   +     L    L + F+  K I           
Sbjct: 206 LNLSALKEEILERARTLQAQIHQRVPTQRAKDALKCANLQEVFSCHKPITEGASYYYFKK 265

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
               L+    +F  ++++  +Y  ++  L      +     Y         LDF  + + 
Sbjct: 266 YG--LEDLNSDFEALKEKIISYYKWQEIL-IFQEVERFLDLYATHTHSPTQLDFNAIALK 322

Query: 156 TNDLLKKRDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
           T+ LL    V   +  +++D  I+HIL+DE QDTS++Q+++++ L  +   G+    + R
Sbjct: 323 THALLAGNLVDRDFFYFRLDGRISHILVDEFQDTSVLQYQILQPLIAEIKAGRGQSLADR 382

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           ++F VGD KQSIY F G+                          EL  ++RS   +L  V
Sbjct: 383 SVFFVGDVKQSIYGFRGSYSDLFTHACAEFSSS-----------ELDTNYRSDKAVLDFV 431

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +  FS         +        ++    + G V++ +                      
Sbjct: 432 NATFSK--------KFEGQYSAQKAHPKAKEGFVKVCKVHDLL----------------- 466

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                         +   +  ++             +  ++I +L  K +D   I     
Sbjct: 467 ------------EALCAEVCALLEA----------KVPPQEIAILCFKNQDAITIRDFLL 504

Query: 395 FLKND--YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                    ++++      L      K L+   +  L  + +  +     + L       
Sbjct: 505 QSPQPSLQGVALISETDTRLLAQREAKILLHALKHALVPQQNKPYHMACMAKLLGLPLHT 564

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
             ++               +         +H+++                          
Sbjct: 565 PLQLPPFNSSLSAYLLATMRAFQLYSDPARHLLEL------------------------- 599

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
                                         +   +++ I+ LE+         +     +
Sbjct: 600 ----------------------------SLNQHDIEQFIATLEKEALGFNHTATQG---I 628

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           +IMT+H +KG+E   V +V+  S                              ++ ++  
Sbjct: 629 KIMTIHKSKGMEFGHVIVVEPFSNKRPDTSKFFTLYDQKRL---RPFYRQKYRENFDSEY 685

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           +  ++ LKK    E   +LYV  TRA   LI+ + S+ S                     
Sbjct: 686 TKALETLKKRNVREDQNVLYVACTRAKHSLIVIQDSHKS--------------------- 724

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                           W   +  T  P  T    + T        +  K       +   
Sbjct: 725 -------------VFNWEEMQVGTITPAQTLTSPQTTASNTPALLENQKAFGRQNDHLHK 771

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
           +    +P  +                    G  +HK L++            +  Y   +
Sbjct: 772 QISS-SPDAL----------------ALRFGQALHKALEL--HYGYGIALAQLQPYLQHH 812

Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
                  E   +L  +  L +       +   +      S +++      ++  R+D + 
Sbjct: 813 FAFM-RVEASQVLKRLQALQQEQTFQELLERGTP-----SVELSFKIDQSVL--RMDMLI 864

Query: 873 ISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            + Q   ++I +YK+              H  Q+  Y++ ++  Y + S+   LIY
Sbjct: 865 NNPQEKQLWILDYKSGSTYSHT-------HQQQILSYQESVQRLYSDYSVQATLIY 913


>gi|83816462|ref|YP_444656.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
 gi|83757856|gb|ABC45969.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
          Length = 712

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 100/617 (16%), Positives = 197/617 (31%), Gaps = 117/617 (18%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           +     K L   Y   KK++ ++DF+D        L+  +    +R+++     H+L+DE
Sbjct: 190 SLHAELKALRDAYRRYKKEHGLMDFDD---LLERTLELLETDDDVRHQVASRCRHVLVDE 246

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+ +Q E+++  +          S    +  VGD+ QSIY F GA+ + + R     
Sbjct: 247 YQDTNALQAELVKKFS----------SVHGNVTVVGDDAQSIYKFRGADFRNIFRFPDEF 296

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                       +++L  ++RST  IL + ++V    E +   +                
Sbjct: 297 D--------DTEVVKLEHNYRSTQPILDLANRVIEQAERSYDKTLF-------------- 334

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                           +   +  +     D   +       AR +A  +  +        
Sbjct: 335 --------------TEKTEGELPALVPAADGDME-------ARFVAEMVLRLREDG---- 369

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 +   D+ VL R   +   +        N   I  V      L +   IKD++A 
Sbjct: 370 ------VPLSDVAVLFRSSHNAYDLEVEL----NQRNIPFVKYGGMKLNEAAHIKDVLAH 419

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANCGISKF 481
            + + + +D  S+   L+  +          + +  T+  E          F++   ++ 
Sbjct: 420 LKVVENPQDAASWNRALQ-LIHGIGPKTAQSLIEWTTEAAEDPLTLGDGAPFSDRYAARL 478

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNE 540
           + +   +  +   +   S  +    IL   +   +   +    +    L+        +E
Sbjct: 479 KQLFSTLRHVR--SDDTSVTEQVEAILDYYQPLFENKYADDHPKRAPDLEHLAGLAANHE 536

Query: 541 --QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             Q   SSL     EL                 + + T+H+AKGLE   VFL+       
Sbjct: 537 SRQRFLSSLTLDPIELTALDQETGEDDEPP---LVLSTIHSAKGLEFHTVFLIRALDGTI 593

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +H  +                                       +E  RL YV +TRA
Sbjct: 594 PSRHALREPGG----------------------------------VDEELRLFYVAVTRA 619

Query: 659 SDQLIICKHSNT-SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            + L I          +     T    V D   +     ++   ++++++   A E    
Sbjct: 620 EEGLFISYPMTQYRRGQGEYMTTPSRFVEDLPDDVLEPVQLVEEDAVDENAPDAPEGGDT 679

Query: 718 HPENTPLEREETIKQLM 734
            P +   E     +   
Sbjct: 680 LPSSRNGEAPAPPESTR 696


>gi|318040198|ref|ZP_07972154.1| UvrD/REP helicase [Synechococcus sp. CB0101]
          Length = 1204

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 117/892 (13%), Positives = 228/892 (25%), Gaps = 159/892 (17%)

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
              + +         + LA L  A +  +     ++++  + F  L+    + L     ++
Sbjct: 324  RPLLEAIAALVDGPAELALLHFAHWGRSELLRRRERSGQMGFGQLL----EALDPGPDAS 379

Query: 168  ---WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                +   + Q     LIDE QDT  IQW +++              S   L  VGD KQ
Sbjct: 380  SPSPLLEAVAQRYRAALIDEFQDTDPIQWRILQR-------AFTGPGSNHLLVMVGDPKQ 432

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            +IY F G E     +                    L  + RS+A ++  ++ +       
Sbjct: 433  AIYRFRGGELATYRQAAA----------SASERYGLIENRRSSAALVAGLNALMR----- 477

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                                 G V     V          +                 + 
Sbjct: 478  --------------------PGLVLSELDVPEVEAQANKGELLLGADETPLQLLPVEPAQ 517

Query: 345  LARRIAYTISNMIGTDTIFSNG-KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
            L  R+A     ++    +   G  +RV++  D+ +LV +           R      ++ 
Sbjct: 518  LESRVAALCQAVLERRLVLRQGASERVLEPVDLCLLVGRHSQA----ESLRAALEQRQLP 573

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
                 R  + + +    L  L   + S  D      +  SPL  +S +++          
Sbjct: 574  SRLVSRGDVFETVGATALQRLLDALASPGDPGRQRLLAASPLLGWSAEELQA-------- 625

Query: 464  ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                            ++  +   + +                +L A    Q        
Sbjct: 626  ------------SPPERWDQLAADLSQWAQQLPRLGLTGVLAELLAADGLAQ---LSLRG 670

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH--------SANHNEVRIM 575
              +  L +          +           L       +R           A  + + ++
Sbjct: 671  RALADLQQAAELVQEQMHSQGLGAVAAADWLRNLRLQEERDPPDTHLCRSDAAQSAIAVV 730

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            TVH +KGLE PVV            K   +      L  D   P                
Sbjct: 731  TVHRSKGLEYPVVICPYLWKAPAPAKAGGQRLGRRWLPPDSPSPRLDLHLNPYWGPGRTA 790

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM--VYDSFHNDE 693
             +   ++  +E  RL YV  TRA   L++        E  +    W +   +      D 
Sbjct: 791  ARQDHQAQLQEAERLAYVACTRAQHLLVLAWPGADQAEAGNPLSPWLEQPELAALHPIDP 850

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET-------IKQLMDEQKIPKKLFSP 746
                          E  A E       +                   +  Q   +   S 
Sbjct: 851  AELPPPKRPWTPDPEQGALELGPTPSRSLDSRWGRASYSAWAHAGAALPPQAQDEGRDSD 910

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
              N  ++          +     L  L +  +    G  +H++L+ +             
Sbjct: 911  ALNPADDSDAAAAPATPSSSWPALGPLAAFPRGSGPGDALHRMLEQLDFGELAHNPEASR 970

Query: 807  SYC--TKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEVSVSGKIN 856
                         A+    LL  +  L+++P         +    S    SE++    + 
Sbjct: 971  PLLLQELERAGLDAELIDPLLDGLVHLVQSPLGGALGACRLMDLASGSWLSELNFDLPLA 1030

Query: 857  CPKKDIIIS------------------------------------GRIDQISISQQNIFI 880
                D ++                                     G ID +   Q+  ++
Sbjct: 1031 HDDPDRLVRSSGLASAFEQHPGGPFGADYGRQLRSLQVASRGFLTGSIDLVFQWQERWWV 1090

Query: 881  FEYKTHH--------------HVPQEIEHIPY-----THIAQLSIYEKILKD 913
             ++K++                       +        +  Q  +Y   L  
Sbjct: 1091 ADWKSNWLGRKGSQGQVLACGPADYSQAAMAELMSRSHYPLQAHLYLVALHR 1142


>gi|217033850|ref|ZP_03439275.1| hypothetical protein HP9810_877g54 [Helicobacter pylori 98-10]
 gi|216943748|gb|EEC23191.1| hypothetical protein HP9810_877g54 [Helicobacter pylori 98-10]
          Length = 938

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 127/866 (14%), Positives = 256/866 (29%), Gaps = 180/866 (20%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T  K        KK  D    L+   +E      R+          A       
Sbjct: 245 FLNSSLTWLKKKGEYRDFKKIKDEIPTLESECEEIENDLKRYYEA----RESALFKKFPK 300

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D  I HILIDE QDTSL
Sbjct: 301 FIQLYDKATSKIQALDFDAIKDKVHALLNGYEEMPAEFFYFRLDSRIAHILIDEFQDTSL 360

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY F G+                 +
Sbjct: 361 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYGFRGS-----------FSSLFES 409

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS+  I+  V+ +F         +       +  S++  + G V++
Sbjct: 410 VSKDFYHDSLEFNHRSSPLIINYVNTIFKKAYQNSPTAYWEQKYPKASSNKHAKDGYVKV 469

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L ++I     N++             
Sbjct: 470 SLVA-------------------------DERELLLKQILQEAKNLLEH----------R 494

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L     D   I    +   +  + S   + +        I            
Sbjct: 495 IDPKDITLLCATNDDALEIKNYLQKNLSAIRPSTESSAKLSQFVESKIIKNALEYALAEE 554

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   +     + E+                         
Sbjct: 555 PYKPFYKHSVLK--LAGYLHDDAIALAGFNPKKES------------------------- 587

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       F   ++                    L E      +         ++ 
Sbjct: 588 ---------VAGFVWKVME-------------------LFELYTECTQICLELAVGCEDA 619

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              LE+     K   S      +IMT+H +KG++   V + +   +  ++    +     
Sbjct: 620 NEFLEK--LETKEIASFKAEGAQIMTIHKSKGMQFSYVIVCERLGKPKTNNS-NQFLEEY 676

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           S  +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 677 SGTELMRLYYRMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIVVAKDKK 736

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
              +K               +   +++ ++   I+  +          P     + +E  
Sbjct: 737 GMREKL--------------DLAPLEEGEIAPVISSQKEPLIPSVVIKPHAYGEQVQEIE 782

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
           ++  D +K                                       +  N G+ +HK L
Sbjct: 783 EEPSDYEKNND-----------------------------------QEAINFGIALHKGL 807

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EV 849
           +          K  +  Y   +   +   +Y+ L  S+     +  +       +   EV
Sbjct: 808 EY--QYAYRIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQALFKNLALRGEV 864

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           +         + ++   RID +   +   +++ +YK+  +          +H  Q+S Y 
Sbjct: 865 AF------LFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSHKVQVSHYA 909

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFI 934
             L+   P+  +   +IY +  ++  
Sbjct: 910 AFLQTQAPHFKIQAGIIY-AHKRLLE 934


>gi|222084834|ref|YP_002543363.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84]
 gi|221722282|gb|ACM25438.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84]
          Length = 689

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/675 (16%), Positives = 201/675 (29%), Gaps = 127/675 (18%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I +++       ++D   +       G   +   A+   L  A    
Sbjct: 70  RRAAAEMGRRVERICREVLGANAGIMADALAWTGTFHGIGARLLRDYAEQIGLDPAFTIH 129

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++          + ++   ++  + P     L                 + F
Sbjct: 130 DREDSADLMNLI--------RHDLGFSKLESRFPTKGTCLAIYSRAVNSEAPLEEMLRDF 181

Query: 121 KSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
               A+     + L A Y EAK+   VLD++DL++    +L +  ++  I        +H
Sbjct: 182 FPWCATWDKQLRDLFAAYVEAKQAQNVLDYDDLLLYWAHMLHEPLIAEDI----GGRFDH 237

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++ +L              + L  VGD+ QSIYSF  A  + +L 
Sbjct: 238 VLVDEYQDTNRLQSSILLAL----------KPDGQGLTVVGDDAQSIYSFRAATVRNILD 287

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                           +I+ L  ++RST  IL   + V  +       +  +      R 
Sbjct: 288 FPTAF-------TPSANIVTLDRNYRSTQPILAAANAVIDLASERFTKNLRTERQSAERP 340

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                               L      +  AR IA  +     +
Sbjct: 341 -----------------------------------RLVTVRDEADQARYIADQVLENRES 365

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                       + K   VL R    +  +            I  V        D   +K
Sbjct: 366 G----------AKLKQQAVLFRTSSHSGPLEIEL----TRRNIPFVKFGGLKFLDSAHVK 411

Query: 420 DLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           D++A  RF  +  D ++   +++  P    S             +               
Sbjct: 412 DMLAALRFAQNPRDRVAGFRLMQLLPGVGPSTAQRVLDHIGEEASPMAALAEFPAPPRSG 471

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +   +  + EL               I   ++  +  + R   +    L + +     
Sbjct: 472 EDWTGFVATMQELKSGKAGWP-----AEIGLVRQWYEPHLERAHEDASTRLADLIQL--E 524

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
                Y S +  ++EL   PP      +     + + + + T+H+AKG E   VFL++  
Sbjct: 525 QIAGGYGSRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWTKVFLLNVV 584

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                    +     +  EE  RLLYV 
Sbjct: 585 DGCIP----------------------------------ADLAVGSSAEIEEERRLLYVA 610

Query: 655 MTRASDQLIICKHSN 669
           MTRA D L +     
Sbjct: 611 MTRAKDGLDLVIPQR 625


>gi|308064321|gb|ADO06208.1| putative recombination protein RecB [Helicobacter pylori Sat464]
          Length = 949

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 133/866 (15%), Positives = 263/866 (30%), Gaps = 169/866 (19%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T    +  +   +    LK+++   + E  +I +    Y   K + A       
Sbjct: 245 FLNSSLTW---LEKKSEYRHFKKLKDEIPTLESECEEIENDLKRYYEAKES-ALFKKFPK 300

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D  I HILIDE QDTSL
Sbjct: 301 FIQLYDKATSKIQALDFDAIKDKVHALLNGYEEMPAEFFYFRLDSRIAHILIDEFQDTSL 360

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY F G+                 +
Sbjct: 361 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYGFRGS-----------FSSLFES 409

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             ++F    L  + RS+  I+  V+ +F         +       +  S++  + G +++
Sbjct: 410 VSKEFYHDNLQFNHRSSPLIINYVNTIFKKAYQNSPTAYLEQKYPKASSNKHARDGYIKV 469

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 470 SLVA-------------------------DGRELLLEQILQEAKNLLEH----------R 494

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L     D   I    +   +  + S   + +        I            
Sbjct: 495 IDPKDITLLCTTNDDALEIKNYLQENLSAIRPSTESSAKLSQFVESKIIKNALEYALAEE 554

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   +     + E+V  ++ K                  
Sbjct: 555 PYKPFYKHSVLK--LAGYLHDDAIALAGFNPKKESVAGFVWK------------------ 594

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                           +        Q          D  +EFL      E    +S    
Sbjct: 595 -------------VMELFELYGECAQICLELAVRCEDA-NEFLEKL---EAKEIASFNAK 637

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +                    +IMT+H +KG++ P V + +            +     
Sbjct: 638 GA--------------------QIMTIHKSKGMQFPYVIVCE-RLGKPKSNSSNQFLEEY 676

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           S  +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 677 SGTELLRLYYRMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELGLIVVAKDKD 736

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             + K   ++            E  +   + +S  +    +     H       E EE  
Sbjct: 737 QKKDKKESKSKGMREKLDLLPLEEGEIAPVISSQKEPLIASVVIKPHAYGEQVQEIEEE- 795

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                                       PS  +            D +  N G+ +HK L
Sbjct: 796 ----------------------------PSDYEKNN---------DQEAINFGIALHKGL 818

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EV 849
           +       +  K  +  Y   +   +   +Y+ L  S+     +  +       +   EV
Sbjct: 819 EY--QYAYNIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQALFKNLALRGEV 875

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           +         + ++   RID +   +   +++ +YK+  +          +H AQ+S Y 
Sbjct: 876 AF------LFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSHKAQVSHYA 920

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFI 934
             L+   P+  +   +IY +  ++  
Sbjct: 921 AFLQTQAPHFKIQAGIIY-AHKRLLE 945


>gi|307638220|gb|ADN80670.1| putative ATP-dependent helicase [Helicobacter pylori 908]
 gi|325996814|gb|ADZ52219.1| helicase [Helicobacter pylori 2018]
 gi|325998406|gb|ADZ50614.1| putative ATP-dependent helicase [Helicobacter pylori 2017]
          Length = 946

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 131/870 (15%), Positives = 261/870 (30%), Gaps = 178/870 (20%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T    +  +   +    LK ++   + E  +I +    Y   K T         
Sbjct: 243 FLNSSLTW---LEKKSEYRYFKKLKSEIPTLESECEEIENDLKRYYEAKETAIFKKF-PK 298

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y+ A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 299 FIQLYDNATSKIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIVHILIDEFQDTSL 358

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY+F G+                 +
Sbjct: 359 NDYKILVPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS-----------FSSLFES 407

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS   I+  V+ +F         +          +++    G V++
Sbjct: 408 VSKDFYHDNLEFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPEASNNKHVTEGYVKV 467

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 468 SLVA-------------------------DEKELLLEQILQEAKNLLDH----------R 492

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L    KD   I    +   +  + S   + R        I            
Sbjct: 493 IDPKDITILCATNKDALEIKNYLQERLSAIRPSTESSARLSQLVESKIIKNALEYALAEE 552

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   +     + E+                         
Sbjct: 553 PYKPFYKHSVLK--LAGYLHDDAIALPGFNPKKES------------------------- 585

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       F   I+   K   +                L   +  E  +     E 
Sbjct: 586 ---------VAGFVWKIMEQFKLYGEPAQSC-----------LELAIGCEDAN-----EF 620

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + +LE            N    +IMT+H +KG++ P V +         +       +  
Sbjct: 621 LEKLEAKEIASF-----NPKGAQIMTIHGSKGMQFPYVIV--CERLGNPNSSHANQFLEE 673

Query: 611 SLNDDPGIPIWIPQSKS-RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
               +     +  +++   +   +  +   + +   E   + YV  TRA   LI+     
Sbjct: 674 YNGAELACLYYRMKNREVVDKDYARALNKEEAAKDHEEINVYYVAFTRAELGLIVVAKDK 733

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
             ++K+S  +T  + +      +  +  +           +  +   +  +   +E E  
Sbjct: 734 KESKKESKNKTMCEKLDLLPLEEGEIMPVISPQKEPLMTSVVIKPHAYGEQVQEIEEEPD 793

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                                         S  +            D +  N G+ +HK 
Sbjct: 794 ------------------------------SDYEKNN---------DQEAINFGIALHKG 814

Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-E 848
           L+       +  K  +  Y   +   +   +Y+ L  S+     +  +       +   E
Sbjct: 815 LEY--QYAYNIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAEIQALFKNHALRGE 871

Query: 849 VSVSGKINCPKKDIIISG---RIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQL 904
            +            +  G   RID +   +   +++ +YK+  +          +H AQ+
Sbjct: 872 AAF-----------LFQGVVSRIDVLLWDRGQNLYVLDYKSSQN-------YQQSHKAQV 913

Query: 905 SIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
           S Y + L+   P+  +   +IY +  ++  
Sbjct: 914 SHYAEFLRTQAPHFKIQAGIIY-AHKRLLE 942


>gi|29829618|ref|NP_824252.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606726|dbj|BAC70787.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 1202

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 118/818 (14%), Positives = 229/818 (27%), Gaps = 134/818 (16%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95
             +          A+ L++A          F  L    LT      ++++      +  +
Sbjct: 155 ARLLADATRYQLAARVLREAPGPYPALTRSFPDLVGDLLTLDSELAEHLV------RPEE 208

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L+    +        +      +    T A+      L   Y  AK++  +LDF D I  
Sbjct: 209 LRAYDAELLSSLEGAKLSNAELRKIPETAAARRELADLVVRYRAAKRERDLLDFGDQIAL 268

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
           +  L +     A +   +  E   +L+DE QDTS+ Q  ++  L            +   
Sbjct: 269 SATLART---RAEVGAILRDEFRVVLLDEYQDTSVAQRVLLAGLFGG--------GTGHP 317

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           + AVGD  Q+IY + GA    +          A   G+  +   L  + RS   +L + +
Sbjct: 318 VTAVGDPCQAIYGWRGASVANLDDFPEHF---AHADGRLATRQALSENRRSGGRLLDLAN 374

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +                       R    G   L     ++HD Q         +    
Sbjct: 375 GL-------------------AEPLRALHAGVEALRPAPGAEHDGQVRCALLRTHAE--- 412

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                        IA ++++++ T            +  +I VL R   D   I      
Sbjct: 413 ---------EIDWIADSLAHLVRTGK----------EPGEIAVLCRTATDFAEIQGALVA 453

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 + V       L     + DL+A+   +     + S V +L  P +     D+  
Sbjct: 454 ----RDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLAL 509

Query: 456 ICTQRH---------------------------------------------ETETVYEYI 470
           +  +                                               E     +  
Sbjct: 510 LGRRARLLVSHARVGADDDPDRRLAAAVEGVDPSEVISLADALDTFLEAPLEDPAEADDG 569

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVID 527
             F+     +F  +   + +L   +      D    +L       +  +          +
Sbjct: 570 LPFSADARVRFARLAAELRDLR-RSLADPLMDVLHRVLAVTGLEVELSASPHALAARRRE 628

Query: 528 VLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGL 583
            L  FL+       +   ++L   +  L            A     N V+++T H +KGL
Sbjct: 629 TLSNFLDVAASFAASDGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGL 688

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           E  VV +    +  F     ++       ++P         +   ++   +  +    + 
Sbjct: 689 EWDVVAVPGLVTGTFPSTQGREKWTAQGKVLPHELRGDADTLPDIEAW-DSRGMKAFHEA 747

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           +K+    E  RL YV  TR    L+   H    ++K+    + +             +  
Sbjct: 748 MKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRPRGPSDFLHALYEHCAAGYGEIE 807

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                  ++E              PL  ++T              +          +   
Sbjct: 808 AWAEEPEENEENPALHEAAADHAWPLPLDDTALARRRAAAETVLAYLERVASHENAHPSA 867

Query: 759 PSTI---------DTKGKTNLESLLSDNQTFNRGLIIH 787
           PS +         D     + ES   D      G + H
Sbjct: 868 PSAVHDPTSYDDPDWPPPEDAESPHEDPFDEAYGDLAH 905



 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 68/304 (22%), Gaps = 41/304 (13%)

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            +        E    +    +   D   + E     + T         A       P  TP
Sbjct: 903  LAHDEAPYGEDDVPEEGLLEDDGDDDADWESWSTDRPTVPHQAAAPEARPHPAGPPPLTP 962

Query: 724  LEREETIKQLMDEQKIPKKLFS----------PIKNDINEPYILNPSTIDTKGKTNLESL 773
             E         D   +  +L            P     ++   L         +      
Sbjct: 963  EEARTIASWDRDLDALTGELLRARASVTDVPLPASLTASQLLELAADPDGFAQELARPMP 1022

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
                    RG   H  ++                +      +    E       I    +
Sbjct: 1023 RPPQPAARRGTRFHAWVE--------------ARFEELRLPMLEPDELPGSEAEIADERD 1068

Query: 834  NPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRIDQISISQQ----NIFIFEYKTH 886
               +  A         +   V           ++ GRID +   +        I ++KT 
Sbjct: 1069 LEALKDAFERTPYAHRTPYRVEVPFQLAIAGRVVRGRIDAVYRKEGNDGTTYEIVDWKTS 1128

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
                 +          QL++Y     +    P +S+    +YV   +V          A 
Sbjct: 1129 RTRTADP--------LQLAVYRLAWAEQQGVPLESVTTTFLYVRSGEVVRPDGLPDRAAL 1180

Query: 945  AEIS 948
              + 
Sbjct: 1181 ERLL 1184


>gi|145611136|ref|XP_368614.2| hypothetical protein MGG_00630 [Magnaporthe oryzae 70-15]
 gi|145018457|gb|EDK02736.1| hypothetical protein MGG_00630 [Magnaporthe oryzae 70-15]
          Length = 819

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/644 (13%), Positives = 183/644 (28%), Gaps = 174/644 (27%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
           ++ D  +  +         +  + S  LA      Y+    ++ +LD++DL++   +LL+
Sbjct: 155 RANDRVVSSQQEKAAKSGKQQPIHSRELAT-CYEEYQAQLTRSNLLDYDDLLVKGVELLR 213

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                          +  +LIDE QDT+ +Q+++++ L +              +  VGD
Sbjct: 214 AAPECV-------SNVQAVLIDEYQDTNGVQYDLMKLLAQ----------RHGRITVVGD 256

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q+                                + L  ++RS+  IL    K+    
Sbjct: 257 PDQN-------------------------------KVALEENYRSSESILATSLKIIQQE 285

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E        +  T   +                                     L +  +
Sbjct: 286 EKRFDKVLKAVHTRGTKPV-----------------------------------LRKLRN 310

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
           ++  A  I   +   I            ++   D+ +L+R    +  I            
Sbjct: 311 SAQEAEWIVAELRRTI-------LLSGDMMNHDDVAILLRSAALSRHIESAL----GKAG 359

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQR 460
           I       F   +   IK ++   R +   +++ +   ++  P     +  I   +    
Sbjct: 360 IPYRMVGGFKFYERAEIKLILDYLRVVYQPDNNDALARIINVPKRGAGDATIKALLEEAE 419

Query: 461 HETETVYEYIQKFANCGISK---------------FQHVIKYIHELIHIAQFCSPH---D 502
              ++++  ++K    G                     +I  I + +  +   +P+   D
Sbjct: 420 KSQQSLWSLLRKHCTGGKQAKTTLRKQVEQKISGGLIRLILDIRKKMDESTAENPYSMLD 479

Query: 503 FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-----------------EQN 542
             + +L      Q     + +E       + EF+N                      +  
Sbjct: 480 VISQVLSRLDFEQHLKDTYNDEWEGRWANVQEFINLATDFMTGNEVEEELPEIDGLQQTP 539

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              +L   ++ +             N   V + T+H AKGLE PVVF+    +    H  
Sbjct: 540 ERDTLARFLANVSLATDVQNNDPGQNRPMVTVSTIHAAKGLEWPVVFIPAAYNGSIPH-- 597

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                               ++    +E  RLLYV MTRA   L
Sbjct: 598 ------------------------------------IRSEDGDEERRLLYVAMTRAKALL 621

Query: 663 IICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            +         N +K    ++   V   F          +   +
Sbjct: 622 YLSYPVVGGYGNGEKVTLSSFLSGVEGHFAVQGPTFNSAVLEEL 665


>gi|219682360|ref|YP_002468744.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola str.
            Tuc7 (Acyrthosiphon pisum)]
 gi|219622093|gb|ACL30249.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola str.
            Tuc7 (Acyrthosiphon pisum)]
          Length = 1174

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 132/836 (15%), Positives = 279/836 (33%), Gaps = 133/836 (15%)

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            + F DL+     LLK      +++  I ++     IDE QDT + Q+++   L +     
Sbjct: 350  IGFNDLLS---ILLKTIKKEKFLKDLIIKKYPAAFIDEFQDTDIQQYKIFNLLYKK---- 402

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                +    LF +GD KQ+IYSF GA+    L  K   +K             L  ++RS
Sbjct: 403  ----NKTTVLFLIGDPKQAIYSFRGADIFSYLYAKSKIKKYY----------YLDTNWRS 448

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            + +I   ++ +FS   N           +   S  +    T+          +       
Sbjct: 449  SINICKSINFLFSQNINPFIFKNIPFIPVVPSSKNLKMNFTI----------NDVAQTPI 498

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVR 381
              +      +  +     +A++ A  IS  +     G   I +   ++++ A DI +LVR
Sbjct: 499  SFFLQEEKEVSIDDYQVWIAKQCANEISFWLTCAKTGKAKITTKNGEKILTANDIAILVR 558

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             RK+  LI      L     IS+  +++  +   L  ++L+ +   IL  E+++     +
Sbjct: 559  NRKEADLIQDELEKL---NIISIYSSNKNSVFQTLDAQELLWILESILEPENEILLQQSM 615

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +    +  +           + +   + +    I +   V + I  +I   Q  S  
Sbjct: 616  ASHI--LKKLSLVVENKTISNKNSYFIIEKLYEYHDIWEKIGVFQMIKIMILEYQKNSFC 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
                             +   N     + E L    +      S ++    ++       
Sbjct: 674  TEINE------------NHIKNLNFLHIGELLQEQFQFFHKKISLIRWFQKKISTKTQPE 721

Query: 562  KRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                         ++I+T+H +KGLE P+V++       FS    K    +         
Sbjct: 722  YNESIKCFDESPSIKIITIHKSKGLEYPIVWIP------FSIDFKKSTLAIYHDQ----- 770

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN--EKKS 676
                 ++    N  +  +K   +    E  R LYV +TR+     I          + ++
Sbjct: 771  --KSLKTFFDENYSNKFLKIADEERLAEDIRFLYVALTRSILHCSIGLACLIKKIIKNRN 828

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL--- 733
            N       +  +    + +    L   + K     +    ++ +N    R+     L   
Sbjct: 829  NSDIHQSGLGFTIQGGKTMNYEGLLEKLKKLSINNFIEVKNNTDNFSFSRKPQTISLICK 888

Query: 734  ---MDEQKIPKKLFSPIKNDINEPYILNPSTI------------DTKGKTNLESLLSDNQ 778
               ++++ I         + +N+   L+                  K   +L ++ +  +
Sbjct: 889  NKFLNKKNIRSTWSITSFSQLNKINKLSKHHQKEVALKELCIKNQEKKNQSLLTIHNFPK 948

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-- 836
                GL+IH +L+ +  + ++K  N+ +    K       K    L+  I  ++  P+  
Sbjct: 949  GKKTGLMIHYILKNL-HVLKNKNSNWFSCILEKYNIHI--KWTSVLIYWIKNIINTPLND 1005

Query: 837  ----MTTAMSCDSYSEVSV--------------------------SGKINCPKKDIIISG 866
                ++      S  E+                            S +++      +++G
Sbjct: 1006 EKIILSRIDEKSSIRELEFFFPIKNMLYSTELNKIIQSINPTSITSPQLSFNPVKGMLTG 1065

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
             +D + I ++  +I +YK++                E +   +  Q  IY   +  
Sbjct: 1066 FVDLVFIWKKKYYILDYKSNWLGKNNNFYSSIHINEEIVKKRYHLQYQIYTIAIHK 1121


>gi|257466899|ref|ZP_05631210.1| DNA helicase II [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918046|ref|ZP_07914286.1| DNA helicase II [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691921|gb|EFS28756.1| DNA helicase II [Fusobacterium gonidiaformans ATCC 25563]
          Length = 901

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/837 (13%), Positives = 251/837 (29%), Gaps = 156/837 (18%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           +   K     Y+   +K   + F  + +     L +    +    K+  +I++++IDE Q
Sbjct: 176 IQFLKEAYLLYQNLLRKENKMSFSAIQMELYHSLLEY---SEFLEKVQTKIHYVMIDEYQ 232

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D++ IQ ++I  L+  +          + +  VGDE Q+IY F GA  + +LR  ++ ++
Sbjct: 233 DSNPIQEKIILLLSGKY----------KNICVVGDEDQAIYRFRGATVENILRFPQVFEE 282

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RS+ +I+ + ++  +  +                        
Sbjct: 283 D-------CETVYLEKNYRSSEEIVHLCNQWMNRVD------------------------ 311

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
               W+       S               +   S++      I   +  +     I    
Sbjct: 312 ----WQGERFDKHSYSARYDTIERKSVFRISGSSNSRKRNELI-TWLKELKERKKIED-- 364

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    I+ L    +   +             I V             +K    +  
Sbjct: 365 ------YSQIVFLFDNFRSPQV--KRLEEDLEMAGIPVYCPRARNFFSREEVKLFFGVFM 416

Query: 427 FILSQEDD------LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            +  +  +          C+ +       + D+ K   ++ E E        +     S 
Sbjct: 417 VLSPKIQESVKGYSYYEECLFRVRRLAKDDKDLQKWILEQREKEIGDFLEIYYQILSFSP 476

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
           F+ +++   E +   +          IL + +   +       E ++ L+ F        
Sbjct: 477 FREILEKQEEDVRRGREIYNLSLIGNILQSFQKLCKIKEDSKVERLEYLEYFFQ------ 530

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L   +E+     ++        +  +T+H +KGLE  +V L          
Sbjct: 531 -------SYLKKFIEKGVNEFEKKGEFPKGCIPFLTIHQSKGLEFSIVVLSSLYQN---- 579

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                          P +     +    +      +         ++ R  YV  +RA +
Sbjct: 580 ---------------PPVYREKIRKSYDSLFQKKKLLQEHNEELYDFYRKFYVAFSRAKN 624

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            LI          + +   ++   V  S                     +    S  H E
Sbjct: 625 ALIFL--------EDNVSSSFQAFVRHS---------------------VDIVSSDFHWE 655

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
           + P E   + +++                       L P       K +  SL  +N   
Sbjct: 656 DIPEEEYNSAEEMQTYSYTTDIASY----------DLCPRRYFFLRKISFPSLEREN--M 703

Query: 781 NRGLIIHKLLQVIFTLPEHKR--KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
             G ++H+ L+ +   P+     +  I     K  K       +  +  + ++L+     
Sbjct: 704 IFGTLLHRCLERLHKYPDKIISLEEMIGKEKEKLEKKSKFFFQEKDIKMVYKILQEYQGK 763

Query: 839 T--AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                     +E    GK     +  +I G ID +++ +    I ++KT    P      
Sbjct: 764 AVNLYDEILQAE----GKEFLEWQGNMIYGEIDLLALQENQWKIIDFKTGKENPS----- 814

Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV--FIIPQNKLNKAFAEISTKI 951
              +I QL +Y+ +L+     K +   L Y+ E +     +   +      +I   I
Sbjct: 815 ---YIEQLVLYQNLLRKYGKEKEIRLSLYYLLEQREEKIELSLKEEVAILEKIQRTI 868


>gi|316934039|ref|YP_004109021.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
 gi|315601753|gb|ADU44288.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
          Length = 687

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 111/734 (15%), Positives = 214/734 (29%), Gaps = 131/734 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I + +       +S    +       G   +   A+   L       
Sbjct: 69  RRAAAEMTRRVERIARKVLGDRASALSGGLHWAGTFHGIGARLLRDYAERIGLDPGFTIH 128

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++          + ++   +   + P     L          +         
Sbjct: 129 DREDSADLMNLV--------RHDLGFSKTEARFPAKATCLSIYSRCVNAGQPLDVVLGAN 180

Query: 121 KSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
               A      K L A Y EAK+++ VLD++DL++    ++++   +  I        +H
Sbjct: 181 YPWCAGWAAELKQLFAAYVEAKQRHNVLDYDDLLLYWAQVMEEPAFAQEI----GGRFDH 236

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  V+ +L                L  VGD+ Q+IYSF  A  + +L 
Sbjct: 237 VLVDEYQDTNALQARVLLAL----------KPDGAGLTVVGDDAQAIYSFRAATVRNILD 286

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +              ++ L  ++RST  IL+  + V  +       +  +      R 
Sbjct: 287 FPKAF-------NPPARVVTLDRNYRSTQAILSAANAVIDLARERFTKNLWTDRAEGARP 339

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                               L      +  AR I   + +    
Sbjct: 340 L-----------------------------------LASVRDEADQARYIVERVLDAREG 364

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                         K   VL R    +  +            I  V        D   +K
Sbjct: 365 GATL----------KQQAVLFRTSSHSAPLELEL----TRRNIPFVKFGGLKFLDAAHVK 410

Query: 420 DLMALGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
           D++AL RF+ +  D ++   +   L+      ++  +  +        T+          
Sbjct: 411 DMLALLRFVQNPRDRVAGFRVMLLLQGVGPASAQKALDAMTAAADPLGTL--AALPAPPR 468

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
             + ++  ++ I EL        P +    ++       +            L +     
Sbjct: 469 AGADWRGFVEAIGELRS-GDAGWPAEIERALIWYAPHLDRI-HEDAETRRADLVQLAQIA 526

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVD 592
                + Y S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++
Sbjct: 527 -----SGYPSRERFLTELTLDPPDATSDQAGVPTLDDDYLILSTIHSAKGQEWKQVFVLN 581

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                                                            +  EE  RLLY
Sbjct: 582 VVDGCMPSDLGTGTS----------------------------------AEIEEERRLLY 607

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V MTRA D L +          ++ Q   +     +    +R+  +    S  +      
Sbjct: 608 VAMTRAKDDLHLVVPQRFFTHGQNAQGDRHVYAARTRFIPDRLLPLFERTSWPRVTPETA 667

Query: 713 EWSTHHPENTPLER 726
             +   P      R
Sbjct: 668 AAAHRVPRIDINSR 681


>gi|71006344|ref|XP_757838.1| hypothetical protein UM01691.1 [Ustilago maydis 521]
 gi|46097274|gb|EAK82507.1| hypothetical protein UM01691.1 [Ustilago maydis 521]
          Length = 1176

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/524 (13%), Positives = 168/524 (32%), Gaps = 89/524 (16%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           E  + L    L  K     + I++   K+   ++ +    Q+       +    K F  +
Sbjct: 169 ELKAELEKENLELKPEQAMSEISKAKAKEIDPVRYRQLAEQEAAKSASRKAPIGKQFTGS 228

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            +   +   +   Y++       LDF+DL++    L ++       + ++ + I H+L+D
Sbjct: 229 ASFKQVMATIYIMYQKQLVDANALDFDDLLVYGVQLFRR-------QNQVVRNIRHVLVD 281

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT++ Q+E++R +           ++ + +  VGD  QSIY +  AE   + +  R 
Sbjct: 282 EFQDTNITQYELMRLVA----------TASQAVSIVGDPDQSIYGWRSAEIGNLDKMTRE 331

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                    +      L  ++RST  IL +  +V     +       ++           
Sbjct: 332 F--------KGTQQARLEENYRSTGAILELALRVVQQDTSRVDKDLYTSHPRGLPVVLKS 383

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                                                SA + A  IA  I  ++      
Sbjct: 384 HA-----------------------------------SAQLEAAYIASEIKRLVAH---- 404

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                 V+   D ++L+R    +  I    +       I           D + +KDL+A
Sbjct: 405 ---YGGVLDYNDFVILLRFNYLSRAIEAELQS----RGIDSKMMGGHKFFDRMEVKDLLA 457

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQK---------F 473
                 +     +F+ ++  P     +  +   +   + E+ +  E +++          
Sbjct: 458 YLALADNPGFTPAFIRVVNVPKRGIGDKGVTDLLTMAKAESCSPMELVERVVRGGKNPGI 517

Query: 474 ANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDE 531
                   +H+++ +  +   A+          L++          ++   E     + E
Sbjct: 518 KPAMKRGLEHLVEAVLAVRQAARNGTPVAQLLQLLIEKIDYESYLQAQLDYEARWGNVQE 577

Query: 532 FLN----FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
            ++               SL   I ++  +  + ++      + 
Sbjct: 578 LISFSIIVAQNTAYADTPSLS--IDQIISHTLSNQQDTDTGRDA 619



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 34/124 (27%), Gaps = 41/124 (33%)

Query: 550 LISELEQYPPTIKRAHSANH------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           L + LE           +         +V I T H AKGLE PVVF+       F     
Sbjct: 761 LRTFLEASILATDMGTESEEKDGKKKPKVTISTCHAAKGLEWPVVFIPAIEEGCFPSFR- 819

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                               K     E  RLLYV MTRA   L 
Sbjct: 820 ----------------------------------CEKPDEIAEERRLLYVAMTRAESMLY 845

Query: 664 ICKH 667
           +   
Sbjct: 846 LTHA 849


>gi|260463377|ref|ZP_05811578.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
 gi|259030967|gb|EEW32242.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075]
          Length = 697

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 118/732 (16%), Positives = 212/732 (28%), Gaps = 128/732 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I  ++       ++D   +       G   +   A    L  A    
Sbjct: 80  RRAASEMARRVERIAGEVLGRDAAVITDALTWAGTFHGIGARLLRDYALEIGLDPAFTIH 139

Query: 61  CIEERFSLLSSFFLT-QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++           +    T+        +  +   +Q    ++         
Sbjct: 140 DREDSADLMNLVRHELGLSKTEARFPTKGT---CLAIYSRAVNAQAPLGEVLGS-----A 191

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           F          K L A Y EAK+   VLD++DL++    +  + +++A     +    +H
Sbjct: 192 FPWCAGWAEQLKQLFAGYVEAKQAQNVLDYDDLLLYWAQMAAEPEIAA----HLGGRFDH 247

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++ +L                L  VGD+ QSIYSF  AE + +L 
Sbjct: 248 VLVDEYQDTNRLQASILMAL----------KPDGAGLTVVGDDAQSIYSFRAAEVRNILD 297

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +   + A        ++ L  ++RST  IL   + V          +  S      + 
Sbjct: 298 FPKQFAQAAD-------VVMLERNYRSTETILAAANAVIGEASERFTKNLWSERKSTGKP 350

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             +     V+                                    A  +  TI      
Sbjct: 351 RLVNVRDEVE-----------------------------------QANFVCDTILAEREA 375

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T            K   VL R    +  +            I  V        D   +K
Sbjct: 376 GTAL----------KSQAVLFRASHHSGPLEIEL----TRRNIPFVKFGGLKFLDAAHVK 421

Query: 420 DLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           D++A+ RF  +  D ++   +L+  P    S              E +     +      
Sbjct: 422 DVLAVLRFAENPRDRVAGFRVLQLLPGIGPSAAAQVVETMTSALDEAMGLAGWRPPQRAA 481

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +   +     L   A    P D   + L  +   ++          D+L       L 
Sbjct: 482 DDWPSFVALYSGLR--AGAKWPADLEQVRLWYEPHLERIHEDAITRRADLLQ------LE 533

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
              + Y+S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++T 
Sbjct: 534 QIGSGYASRERFLTELTLDPPDATSDQAGPPHRDEDYLILSTIHSAKGQEWKNVFVLNTV 593

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                         K   EE  RLLYV 
Sbjct: 594 DGCIPADLGVGT----------------------------------KEDIEEERRLLYVA 619

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA D L +          ++ +   +     +      +       S    +      
Sbjct: 620 MTRAKDNLNLVMPQRFFPHGQAARGDRHLYASRTRFIPASILAAFEQVSWPSAQAAQGRA 679

Query: 715 STHHPENTPLER 726
                      R
Sbjct: 680 PRPDVRVDIGAR 691


>gi|318060452|ref|ZP_07979175.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
          Length = 1171

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/733 (15%), Positives = 203/733 (27%), Gaps = 119/733 (16%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCIEER-FSLLSSFFLTQKFTPQKNIITQEINKKSP 94
              +          A+ L++A        R FS L S  L+      ++++      +  
Sbjct: 131 GSRLLADASRFQLAARVLREAPGPYPALTRGFSDLVSDLLSLDGELSEHLVDPAALSRYD 190

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           +  + L+   +  +         +   + LA   L       Y  AK+   ++DF D + 
Sbjct: 191 E--DLLRTLAEARLSNDQLRKVPEAAAARLALTELTG----RYRAAKRSRDLIDFGDQLA 244

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            +  L ++      +   +  +   +L+DE QDTS+ Q  ++ +L            +  
Sbjct: 245 LSARLAREHPE---VGEALRAQYRVVLLDEYQDTSVAQRVLLSALFGG--------GTGH 293

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            + AVGD  Q+IY + GA    +    R         G       L  + RS        
Sbjct: 294 PVTAVGDPCQAIYGWRGASVANLDDFPRHFP---HPDGTPARRQSLSENRRS-------- 342

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
                      G    +         R    G   L        D         +     
Sbjct: 343 -----------GGRLLALANDLAAPLRALHDGVEALHAPAGKAAD--------GFVRCAL 383

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                     LA  IA+ +                     +I VL R   D   I     
Sbjct: 384 LPTHAEEIDWLADSIAHYVRT--------------GTSPGEIAVLCRTAGDFARIQAALV 429

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 +I V       L     I DL A+   +     + S V +L  P +     D+ 
Sbjct: 430 A----REIPVEVVGLSGLLHLPEIADLRAVCEVLQDPGANASLVRLLTGPRWRIGARDLA 485

Query: 455 KICTQRH---------------------------------------ETETVYEYIQKFAN 475
            +  +                                         E     E    F+ 
Sbjct: 486 LLGRRARLLAGGRSGEDDPDRRLAAAVEGVDPAEIVSLADAVDTFVEGGPDAEDGLPFSA 545

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEF 532
              ++   + + + EL   A      D    +L       +  +          + L +F
Sbjct: 546 GARARLARLGRELRELR-RALADPLMDVLHRVLAVTGLDVELSASPNALAARRRETLGQF 604

Query: 533 LNFTLRNEQNSYS-SLQELISEL---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           L+          + SL   +  L   EQY   +  A     N V+++T H AKGLE  VV
Sbjct: 605 LDIAASFAATEPAASLLAFLGYLRTAEQYEKGLDNALPGGENTVKVLTAHKAKGLEWDVV 664

Query: 589 FLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            +     + F     ++       ++P         +      +   +       ++   
Sbjct: 665 AVPGLVVKQFPSDRGREKFTARASVLPHPLRGDAATLPDVAEWTAKGL-KAFQDGMRAHQ 723

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             E  RL YV  TR    L+   H     +K+    + +             +  +    
Sbjct: 724 ATEELRLGYVTFTRPRSLLLGSGHWWGPEQKRPRGPSAFLTALHDHCVRGHGEIERWAEP 783

Query: 704 INKDEWIAYEWST 716
              ++       +
Sbjct: 784 PGPEDENPALRQS 796



 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 57/234 (24%), Gaps = 25/234 (10%)

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
              + +    +L       +++  P      +   L                 +      R
Sbjct: 928  DRDLDALEGELRRAAASVREVPLPPSLTATQVLRLAEDPDGLARDLARPLPQAPKPAARR 987

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            G   H  L+         R                  E +     I+  L+   +  A  
Sbjct: 988  GARFHAWLER--------RLTAGHEQPHLPLADEGDTEARE-DAEISDDLDLEELKEAFE 1038

Query: 843  CDSYSEVS---VSGKINCPKKDIIISGRIDQISISQQ----NIFIFEYKTHHHVPQEIEH 895
              +Y+      V           ++ GRID +  S +       I ++KT          
Sbjct: 1039 RTAYAHRPAHRVEVPFQLSLAGRVVRGRIDAVYASDEDGRRRYEIVDWKTGR-------D 1091

Query: 896  IPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
                   QL++Y     + +      +    ++V   +     +         +
Sbjct: 1092 RTRADPLQLAVYRLAWAERHGIDPEEIAATFVFVRTGEAVRPGRLPGRAELERL 1145


>gi|307300863|ref|ZP_07580638.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
 gi|306904397|gb|EFN34982.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C]
          Length = 689

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/739 (15%), Positives = 210/739 (28%), Gaps = 129/739 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    ++   E I   +       ++D   +       G   +   A+   L       
Sbjct: 71  RRAAAEMSRRVERICAQVLGRSSGMMTDALSWAGTFHGIGARLLRIYAEQIGLNAEFTIH 130

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F+  +    T+        +  +   ++    ++   +  +  
Sbjct: 131 DREDSADLINLIRHELGFSKTESRFPTKGT---CLAIYSRTVNAEMRLNEVLRTWYPW-- 185

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                      + L A Y EAK+   VLD++DL++    ++    ++  I        ++
Sbjct: 186 ---VAGWEQQLQELFAGYVEAKQAQNVLDYDDLLLYWAQMVSDASLADDI----GNRFDY 238

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  V+ +L              R L  VGD+ QSIYSF  A  + +L 
Sbjct: 239 VLVDEYQDTNKLQSSVLLAL----------KPDGRGLTVVGDDAQSIYSFRAATVRNILD 288

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +              II L  ++RST  IL   + V  +       +  +      R 
Sbjct: 289 FPKQFA-------PAAEIITLDRNYRSTQPILAAANGVIDLARERFTKNLWTDRESAERP 341

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                               L      +  A  I   +     +
Sbjct: 342 -----------------------------------KLLTVKDEADQANCIVEQVLANRES 366

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             +           K   VL R    +  +            I  V        D   +K
Sbjct: 367 GMLL----------KQQAVLFRTSSHSGPLEVEL----TRRNIPFVKFGGLKFLDSAHVK 412

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYEYIQKFANCG 477
           D++A+ RF  +  D ++   +L+  L         KI           +           
Sbjct: 413 DMLAVLRFAQNPRDRVAGFRLLQ-MLPGVGPQTAGKILHTIAADPEPLMALGEVPAPPRS 471

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            + +  +++ +  L               +       +  I          L +      
Sbjct: 472 GTDWMSLVELLQALRKPGSAWPTEIEMARMWYEPHLER--IHEDAETRRADLVQLEQIAA 529

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593
                   S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++ 
Sbjct: 530 GY-----PSRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWRSVFMLNV 584

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                                                     +        EE  RLLYV
Sbjct: 585 VDGCIPSD----------------------------------LATGTSHELEEERRLLYV 610

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           GMTRA DQL +          +  Q   +     +      + +   + +         E
Sbjct: 611 GMTRAKDQLTLMVPQRFFTGGQHAQGDRHVYASRTRFIPATLLQFFESANWPVASPNVSE 670

Query: 714 WSTHHPENTPLEREETIKQ 732
            S          R  T+ +
Sbjct: 671 RSAKQIRIDVAARMRTMWR 689


>gi|326203600|ref|ZP_08193464.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
 gi|325986420|gb|EGD47252.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
          Length = 695

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 100/564 (17%), Positives = 189/564 (33%), Gaps = 110/564 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE+ KKKN ++DF+D++     +L +      +  +  ++  +I +DE QD S IQ
Sbjct: 176 VYKTYEDYKKKNLMIDFDDMLTYAYSILSRYP---QVLKEYKRQYKYIQVDEGQDLSNIQ 232

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +++ L            +   +F V D+ QSIY F GAEP+ +L      +       
Sbjct: 233 FAILKLLAG----------ADGNIFIVADDDQSIYRFRGAEPQYILNISNEFEN------ 276

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +  L  ++RS+ +I+ +  K     +     +  +         R      ++   
Sbjct: 277 --LRLFRLENNYRSSGNIVDLTSKFIMKNDKRYVKAHKTNNK------RADDPMIIR--- 325

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                       + S     +   I  ++      S G      
Sbjct: 326 --------------------------ADNESGQQDFLLKNIQELLKGKKQKSAG------ 353

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKDLMALGRFILSQ 431
                +L R    + L++   +       IS     +R     H  ++++ A   F L  
Sbjct: 354 -----ILYRNNLSSILVSDKLQ----RNGISFRIRQNRLFFFKHWLVQEVCAFLLFALYG 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D  +F  +        S+  +        + E V + I    +    +   + +   E 
Sbjct: 405 CDTEAFAKICFRMNRFISKSMLDCALQG-DDNENVIDRIINSHDLKPFQLNAMRELKGEF 463

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQF--ISRFGNEVIDVLDEFLNFTL--RNEQNSYSSL 547
             +A+          I    +  +     S    +  D L++          +  + SS 
Sbjct: 464 ASLAKKNPWAAL-EYIKNNFRYLESINDYSTISGQSFDYLNKLYGILHGISADCPTISSF 522

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              + ELEQ        H    NE+ + T+H++KGLE   VF++D  +            
Sbjct: 523 LMRLQELEQIFLDGGYRHEDEKNEITLSTLHSSKGLEYDNVFMIDLVNSEIPGD------ 576

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                      +I++ +K   EE  RL YVGMTRA  +L +   
Sbjct: 577 --------------------------KVIENSEKIVLEEERRLFYVGMTRARKKLYLLHP 610

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHN 691
              +NEK        ++V     +
Sbjct: 611 GLVNNEKVLPSVFVNEVVQLLQKD 634


>gi|254432659|ref|ZP_05046362.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001]
 gi|197627112|gb|EDY39671.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001]
          Length = 1248

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 114/962 (11%), Positives = 256/962 (26%), Gaps = 158/962 (16%)

Query: 48   KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
             + Q L Q  Q Q  +  ++        +++      +      ++       ++     
Sbjct: 274  DRCQALSQWIQHQGSKGDYAATLEQKELKEYFHPGAFLKVARPIEATASGPAAREPSLPQ 333

Query: 108  IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
              + +     +   +    L  A +        +++   + +  L+  + D     +   
Sbjct: 334  RPLLEAVADLREGPAEAVLLHAAHWGRRELAHRRERQGRMGYGQLL-ESLDPGDDPEAPC 392

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             +   + +  + +L+DE QDT  IQW ++              +    L  VGD KQ+IY
Sbjct: 393  PLLDAVGERYSAVLVDEFQDTDPIQWRILSR---------AFDARRHRLVLVGDPKQAIY 443

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F G E        R        A     I  L  ++R+T  ++  ++ + +      GL
Sbjct: 444  RFRGGELATYRLAYRQ-------AAADGGISRLDTNYRATPSLIAGLNALMAPGLPRSGL 496

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
            +          S      G       +         P  E+      S  ++     +AR
Sbjct: 497  AVPPVQPPPSPSGWSAPGGEGGDAPTLSLLWLGSDRPAGEA--PPTTSAVEQELPDRVAR 554

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
             +A  I                     D+ +LV   +         R       I+    
Sbjct: 555  LVAAEIRT--------------GEAPADLCLLVSTHRQAG----QLRVALARAGIASRLV 596

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                +        L  L   +    D      +  SPL  +S                + 
Sbjct: 597  SDGDVFASDGATALQRLLDGLAHPGDPRRLRLLAASPLLGWS-------------AGAIA 643

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
                +  +    K       +  L  +    +  D     L       + ++      + 
Sbjct: 644  AAGAEQWSALSEKLLRGRDGLPRLGLLGVLAALLD--DEGLARLGLEGRVLADLNQCAL- 700

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKG 582
                 L   +  +Q    +  E + +    P                  V ++TVH +KG
Sbjct: 701  ----LLQERIHTDQLGADAAAEWLRQRRLAPDPSPPESHQPNSDVEDEAVWVVTVHRSKG 756

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PVV          ++     +   PS    P + + +     R +     ++  + +
Sbjct: 757  LEYPVVICPYLWKAPHANPRGLGLRWQPSDRTGPVLDLHLGSRWGRGH---QALEQHRAA 813

Query: 643  TQEEYNRLLYVGMTRASDQLIICK--------------------------HSNTSNEKKS 676
              +E  R  YV  TRA  +L++                                + +   
Sbjct: 814  ELQEAERRAYVACTRAKRRLLLAWGPVKGQAGNPLHPWLLAAQAALADADDDPYATQGDG 873

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
              R   ++   +      +  +            A           P  R +        
Sbjct: 874  ELRQALELGLAARQVPMVLMTVPPAAGPLPGRPPATATEPLTLGPVPQRRLDHSWGRSSY 933

Query: 737  QKIPKKLFSPIKNDINEPYILNP-------STIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                +   +     + E    +        + +D +       L    +    G  +H++
Sbjct: 934  TSWTRGSHAAAPQALEEGRETDALAREPELAAVDQEPWPGESPLADIPRGSRAGDCLHRI 993

Query: 790  LQVIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL--------LENPMMTTA 840
            L+ +    P  ++   +     ++         +++L  + RL        L +  +   
Sbjct: 994  LESLDYQRPATQQSEAVRRELERSG--IGRDHLEDVLSGVERLRLSPMGGPLGDFRLAGL 1051

Query: 841  MSCDSYSEVSVSGKINC------------------------------PKKDIIISGRIDQ 870
                  +E++    +                                 +    ++G ID 
Sbjct: 1052 ERGSRINEMNFDLTLGPVTSDSLARPFRDHPGGSFGAGYADQLAALSVQGRGFLTGSIDL 1111

Query: 871  ISISQQNIFIFEYKTHHHVPQEIEHIP-------------------YTHIAQLSIYEKIL 911
            +   Q   ++ ++K++    +  +  P                     +  Q  +Y   L
Sbjct: 1112 VFCHQGRWWVADWKSNWLGERGADGQPLHCGPRHYGAAALAALMAANHYPLQAHLYLVAL 1171

Query: 912  KD 913
              
Sbjct: 1172 HR 1173


>gi|302558544|ref|ZP_07310886.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000]
 gi|302476162|gb|EFL39255.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000]
          Length = 1072

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 111/777 (14%), Positives = 210/777 (27%), Gaps = 126/777 (16%)

Query: 38  SMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            +          A+ L++A          F  L    LT      ++++      +  DL
Sbjct: 134 RLLADATRYQLAARVLREAPGLYPALTRSFPDLVGDLLTLDAELAEHLV------RPEDL 187

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           ++   +        R      +      A+      L   Y  AK++  +LDF D I  +
Sbjct: 188 RDHDAELLRTLENTRLTNADLRKVPEAAAARRELADLVLRYRAAKRERDLLDFGDQIALS 247

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L         +   +  E   +L+DE QDTS+ Q  ++  L            +   +
Sbjct: 248 ARL----AALPEVGRVLRDEFRVVLLDEYQDTSVAQRVLLAGLFGG--------GTGHPV 295

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            AVGD  Q+IY + GA    +          A   G+  +   L  + RS   +L + + 
Sbjct: 296 TAVGDPCQAIYGWRGASVANLDDFPEHF---AHADGRTATRQSLSENRRSGGRLLDLANG 352

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +                       R    G   L     ++ D        +  +     
Sbjct: 353 L-------------------AEPLRAMHAGVEALRPAPGAERDGTVRCALLATHAE---- 389

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                       IA +I++++ T               +I VL R   D   I       
Sbjct: 390 --------EIDWIADSIAHLVNTGKA----------PGEIAVLCRTAGDFAEIQGALVA- 430

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                + V       L     I DL+A+   +     + S V +L  P +     D+  +
Sbjct: 431 ---RDVPVEVVGLSGLLHLPEIADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALL 487

Query: 457 CTQRHE--------------------------------------------TETVYEYIQK 472
             +                                                    +    
Sbjct: 488 GRRARRLVTHARVDGDDDPDRRLAEAVEGVDPAEVISLADALDTFLETPMDGRRDDDGLP 547

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
           F+     +F  +   + +L   +      D    +L       +  +          + L
Sbjct: 548 FSPDARVRFARLATELRDLR-RSLADPLMDVLHRVLAVTGLEVELSASPHALAARRRETL 606

Query: 530 DEFLNFTLRNEQNSY-SSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLES 585
             FL+           ++L   +  L            A     N V+++T H +KGLE 
Sbjct: 607 SNFLDVAASFAAGDGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEW 666

Query: 586 PVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            VV +    +  F     ++       ++P         +    S     +     + +K
Sbjct: 667 DVVAVPGLVTGTFPSGQGREKWTAQGKVLPHALRGDADTLPDVDSWDSRGL-KAFHEAMK 725

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICK-HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +    E  RL YV  TR    L+        S +K      +   +Y          +  
Sbjct: 726 EHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSAFLHALYRHCAAGYGEIEAW 785

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                  +E  A   +T          +  + +              +    + P  
Sbjct: 786 ADEPAEDEENPALHRATDDQVWPLALDDAALARRRAAADTVLAHLDRLATHSDGPAA 842


>gi|317010231|gb|ADU80811.1| putative recombination protein RecB [Helicobacter pylori India7]
          Length = 948

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 124/874 (14%), Positives = 267/874 (30%), Gaps = 170/874 (19%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           + F    +  LT      +    +++  + P L+ + ++ +++  +  +           
Sbjct: 238 DSFRGFLNSSLTWLEKKSEYRYFKKLKSEIPTLESECEEIENDLKRYYEAREI------- 290

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHIL 181
            A           Y++A  K   LDF+ +    + LLK  +   + +  +++D +I HIL
Sbjct: 291 -ALFKKFPKFIQLYDKATSKIQALDFDAIKDKVHALLKGYEEVPAEFFYFRLDSKIAHIL 349

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDTSL  ++++    ++   G       R++F VGD KQSIY+F G+         
Sbjct: 350 IDEFQDTSLNDYKILAPFIDEIKAGIGQAKWQRSVFFVGDVKQSIYAFRGS--------- 400

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                   +  + F    L  + RS+  I+  V+ +F         +       +  S++
Sbjct: 401 --FSSLFESVAKDFYHDNLQFNHRSSPLIINYVNTIFKKAYQNSPTAYLEQKYPKASSNK 458

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             + G V++                             +   +L  +I     N++    
Sbjct: 459 HARDGYVKVSLVA-------------------------NEKELLLEQILQEAKNLLEH-- 491

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    I+ KDI +L     D   I    +   +  + S   +          I   
Sbjct: 492 --------RIEPKDITILCATNDDALEIKNYLQENLSAIRPSTESSANLSQFVESKIIKN 543

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
                             +LK  L  +  DD   +     + E+                
Sbjct: 544 ALKYALAEEPYKPFYKHSVLK--LAGYLHDDAIALAGFNPKKES---------------- 585

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                                F   ++                      E      +   
Sbjct: 586 ------------------VAGFVWRVMEWF-------------------ELYGECAQICL 608

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 ++    LE+     K+  S N    +IMT+H +KG++ P V + +         
Sbjct: 609 ELAVGCEDANEFLEK--LEAKKIASFNAKGAQIMTIHKSKGMQFPYVIVCE-RLGKPKSN 665

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +  +     +  D   +   +   +  +   +  +   K + + E   + YV  TRA   
Sbjct: 666 NSNQFLEEYNGADLLRLYYRMKNREVVDKDCARALDKEKAAKENEEINVYYVAFTRAELG 725

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L++        + +    +            E  +   + +S  +    +     H    
Sbjct: 726 LVVVAKDKGQKKDQKESESKGMREKLDLAPLEEGEIAPVISSQKEPLIASVVIKPHAYGE 785

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
              E EE      ++                                       D +  N
Sbjct: 786 QVQEIEEEPDSDYEKNN-------------------------------------DQEAIN 808

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            G+ +HK L+       +  K  +  Y   +   +   + + L  S+     +  +    
Sbjct: 809 FGIALHKGLEY--QYAYNIPKKSVLEYLNYHHGFYGL-DRQALEESLELFENDTEIQALF 865

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTH 900
                  +++ G+     + ++   RID +   +   +++ +YK+  +          +H
Sbjct: 866 KN-----LALKGEAAFLFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQSH 911

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
            AQ+S Y   L+   P+  +   +IY +  ++  
Sbjct: 912 KAQVSHYAAFLQTQAPHFKIQAGIIY-AHKRLLE 944


>gi|254412445|ref|ZP_05026219.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196180755|gb|EDX75745.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 1139

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/458 (16%), Positives = 137/458 (29%), Gaps = 96/458 (20%)

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            SIYSF  A+   +L  ++       +     ++++L  ++RS  +IL   + +       
Sbjct: 662  SIYSFRMADFTILLGFQQDFGDGLPD-ETTHTMVKLEENYRSRENILQAANYLIEQNTQR 720

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                   T  +                             +        D L +      
Sbjct: 721  IDKILRPTRGL----------------------------GEVIYCHHADDELEE------ 746

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A  +   I  +        N +   +      +L R    +  +    R      ++  
Sbjct: 747  -AHFVVQQILKL--------NQQNPELGWGSFAILYRTNAQSRPLEDALR-----GRVPY 792

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-T 463
            V        D   +KD +A  R I +  D +S + ++ +P     +  I  +     E  
Sbjct: 793  VIIGGLKFYDRKEVKDALAYLRTIANPSDTVSLLRIINTPRRGIGKATIDNLVLAAQELG 852

Query: 464  ETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
              ++E I+        A           + I +     +     +    I+         
Sbjct: 853  TPLWEIIRDETSVNTIAGRSAKAVNRFAQLIKQCQENTENLKAVEIIKFIMEESGYTDDL 912

Query: 518  ISRFGNEVI---DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             ++  +E       + E  N  ++  E+N  +SL+  ++                   V 
Sbjct: 913  KNQGTDEAENRLANIHELYNAIVQFQEENEDTSLEGFLANASLASDLDN--LEDGQQAVS 970

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            +MT+H+AKGLE PVVFLV     +F H       +                         
Sbjct: 971  LMTLHSAKGLEFPVVFLVGLEQGLFPHNRTIDDPV------------------------- 1005

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                       EE  RL YVG+TRA +QL +       
Sbjct: 1006 ---------ALEEERRLCYVGITRAQEQLFLAHARERR 1034



 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 8/150 (5%)

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAH 136
           T  K I+T+++N        +    +      ++   + + F+   +     L   +  H
Sbjct: 162 TLVKTIVTKQLNLDDKKFNPR--TIRYAISNAKNLGLSPQAFEKEQSGYKGRLYAEVYHH 219

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++    N  LDF+DLI+    L ++ +    +      +  HIL+DE QDT+ IQ+E+I
Sbjct: 220 YQDQLAANNALDFDDLILVPVKLFQQNES---VLGYWHNQFRHILVDEYQDTNRIQYELI 276

Query: 197 RSLTEDF-FVGKNTHSSPRTLFAVGDEKQS 225
             LT +            R++F VGD  Q 
Sbjct: 277 HLLTTNGETEKTQWDWRDRSVFVVGDADQC 306


>gi|148653018|ref|YP_001280111.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1]
 gi|148572102|gb|ABQ94161.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Psychrobacter sp.
            PRwf-1]
          Length = 1496

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 141/1044 (13%), Positives = 287/1044 (27%), Gaps = 202/1044 (19%)

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--KIRDRFNT 116
            ++  ++    L            KN   +   K+   L E L+            DR N 
Sbjct: 409  SEDAKKLLGSLRDAQFPNDDGKIKNF-NKNKEKQHQALFE-LETICQLMSIMDKMDRLNQ 466

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            + +      +  +   +        ++     F   ++  N  L  R      RY I   
Sbjct: 467  HILLLLATLNRHIVLAVRDRLPVILEERGETTFSLQMVRLNQALTGRQGEKLARY-IRHH 525

Query: 177  INHILIDEVQDTSLIQWEVIRSLT--------------EDFFVGKNTHSSPRTLFAVGDE 222
                LIDE QD +  Q  +I S+               ++     NT S+   L  VGD 
Sbjct: 526  YPVALIDESQDINGEQAIMIESIYLPSHKRQHSGSQTGDEGKQSTNTKSNQEFLLLVGDP 585

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            KQ+IY F G +       K    K         S+  L ++ RS   ++  ++  F +P 
Sbjct: 586  KQAIYGFRGGDVANYNYMKAQFDKS--------SLWTLDINRRSNKGVIDALNCWFGMPT 637

Query: 283  NAQGLSEDSTT----TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                 ++ +        +H ++   +       +    Q  +  +          D L  
Sbjct: 638  PTTSENKFAELGSHIYYQHITAAKLEKQLSWFNDLDSYQAATSSSAATTEVDLVTDVLSA 697

Query: 339  -----------ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                       +          A  I+ ++ +       K + IQ  DI VL R +KD  
Sbjct: 698  KPVSVLHLPYDKELEYDEHEVTARHIAALLNSGQTL---KGKPIQPSDIGVLARAKKDLK 754

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
             +      L     ++ +      + + +  +D+ AL   +L          +L S L+ 
Sbjct: 755  RVEDELVKL----NVATLTTSDVSIFETIMAEDVAALLSAMLYPYRHDMINRVLTSHLYG 810

Query: 448  FSEDDIFKICTQRHETETVYEYIQKFANCG--------------ISKFQHVIKYIHELIH 493
             S  ++  + T         +                          +Q VI Y+ E   
Sbjct: 811  LSIKEVKAMMTDHESGVAQSDEAAVKVAAHTNSATNGSIQGDTGKKSYQDVISYLKEAAQ 870

Query: 494  IAQFCSPHDFFTLILGAK-----KGRQQFISR-FGNEVIDVLDEFLNFTLRN--EQNSYS 545
              Q          +L           Q   +   G+  I  L   ++   +       + 
Sbjct: 871  RWQNFGILSAMHYLLDKSPVQPQGVWQALAAHPEGDRHIMDLRHVMDILAQYGMGMGEHE 930

Query: 546  SLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             L      ++  P +           + V++MT+H +KGLE P+V+ +  GS      + 
Sbjct: 931  LLAWFRQNIDAAPNSDWAKQYPLPTESGVQLMTIHKSKGLEFPIVYALGMGSASRKSGNK 990

Query: 604  KKM-HIMPSLNDDPGIPIWIPQSKSRNNIVSDL-----------IKHLKKSTQEEYNRLL 651
            +     + +    P   +   Q  S N                      +   EE+ RL 
Sbjct: 991  EDYGLYLYNAQQAPNALVQRVQGSSGNQRRFSAVKDSATTPGYYTDIETQEDFEEFRRLG 1050

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM------------------------VYD 687
            YV  TRAS+ L +             +  +Y                          V++
Sbjct: 1051 YVAFTRASELLYVVLRDPKDKTGFDLKPVFYWFDSSEPKFELPDRLKGSIGMVRGQKVHE 1110

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYE--------------------WSTHHPENTPLERE 727
             + +++   K        +                           W+         + +
Sbjct: 1111 FYQDNDTKAKTHHLTDSTQATLTQPRLEPIKYDKFSDVMRDNYFYGWAKTSFTALARQLD 1170

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
            E+ + +    +          ++ +              K   +   S  +  N G  +H
Sbjct: 1171 ESTQAMAVVDERIDDATYIDISEADGALNAQIQEHGLAIKAVDDIRFSFVKGANAGTFLH 1230

Query: 788  KLLQVIFTLPEHKRKNFITSY------------CTKNAKLWPAK---------------- 819
            ++ + I      +    I                    ++  A                 
Sbjct: 1231 EIFEKIHFTNPEQWPAVIDRAVSGYQLPLAYASVAHQKRILEASRQGANNKTYHIDERGL 1290

Query: 820  EYKNLLLSITRLLENPMMT------TAMSCDSYSEVS-----------------VSGKIN 856
            +++ L+  I  +L  P++              ++E+                      + 
Sbjct: 1291 QHQALMSWINEVLHTPLLASGQRLVDISPKQRFAEMGFNMGLSETFKAQQINTLFERYLP 1350

Query: 857  CPKKDII-------------ISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIE 894
                  I             + G ID +       ++ +YK++              ++ 
Sbjct: 1351 HEPDKHIRLTAQSSSQLYRYLRGEIDLVYEHAGKFYVVDYKSNFLGNSLSNYDETTLKLA 1410

Query: 895  HIPYTHIAQLSIYEKILKDSYPNK 918
                 +  Q +IY+  L      +
Sbjct: 1411 MSKAGYWLQAAIYQVALHRFLSMR 1434


>gi|149179307|ref|ZP_01857868.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
 gi|148841848|gb|EDL56250.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797]
          Length = 693

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 88/692 (12%), Positives = 198/692 (28%), Gaps = 132/692 (19%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINK----------YVSLSMETGNPTILKKAQT 52
            R    +    + + + +        S  ++             L    G    L    T
Sbjct: 68  RRAANEMVRRVDALLRAMSAGRENTASARSRSIWGGTFHSTAARLLRRYGQAIGLPDDFT 127

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           +   S  + +              K  P+K            ++  +   +  +   I +
Sbjct: 128 IIDRSDAEDLMSALRSELDLGNNGKKFPRKG--------TLLEIYSRCVNTCSKLEPILE 179

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R   + +  +        K L   + + K+K  +LD++DL++  + L             
Sbjct: 180 RHYPWCLEHADE-----LKKLFQAFVDRKEKQNILDYDDLLLFWHALAADPAGGKL---- 230

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +  +   +L+DE QDT+++Q  +++++                L  VGD+ QSIYSF  A
Sbjct: 231 LRGQFEAVLVDEYQDTNILQSGILKNIC----------PDGEGLTVVGDDAQSIYSFRAA 280

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             + +L   +  +          +++ L  ++RST  IL   +++          +    
Sbjct: 281 TVRNILDFPQEYE--------GTTVVTLEENYRSTQPILQATNQIIDEAHERYEKN---- 328

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            LW   +S                       S  +  A  +   
Sbjct: 329 -----------------LWSSKISGEAPCLVDC--------------SDNNEQADFVVQQ 357

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +                 I      VL R    +  +            I+         
Sbjct: 358 VLEHREAG----------IPLNQQAVLFRASHHSLSLEVEL----ARRNIAYHKYGGLKF 403

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            +   +KDLMA  R   +  D +S + +L + L    +    ++     E++  ++   +
Sbjct: 404 IETAHVKDLMAYLRLAENPRDAVSGLRVL-TLLPGIGQKKAQQLINLLAESQFRFDAWSE 462

Query: 473 FANC--GISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
           F      +  +   ++ +  L    ++          +                     L
Sbjct: 463 FKPPAATVEHWPLFVRLMKNLSSPQSEKRGISAEVHQVRTFYSPLLDQQYDNATSRQRDL 522

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           ++      R         +  +            + + + + + + T+H++KGLE   V+
Sbjct: 523 EQLEQVASRFSSRMSFLEEITLDPPSSTQDVSAASGADDDDFLVLSTIHSSKGLEWDAVY 582

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           ++         +                                       +   +E  R
Sbjct: 583 VLQAADGSIPSEMSL----------------------------------ESEDEIDEERR 608

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           L YV +TRA + L +C       + +   +  
Sbjct: 609 LFYVALTRAKNWLYVCFPHRQYFQNRRWNQAH 640


>gi|213582501|ref|ZP_03364327.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 486

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 147/440 (33%), Gaps = 78/440 (17%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RS+  IL   + + +   +       S                       
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFS----------------------- 304

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E        +   ++    A R+         T  + ++      Q K
Sbjct: 305 ------------ELGYGAELKVLSANNEEHEAERV---------TGELIAHHFVNKTQYK 343

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + +            +I    +          IKDL+A  R + + +DD
Sbjct: 344 DYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDD 399

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY------IQKFANCGISKFQHVIKY 487
            +F+ ++ +P        + K+        ++++         QK    G         +
Sbjct: 400 SAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHW 459

Query: 488 IHELIHIAQFCSPHDFFTLI 507
           + E+  +A+         LI
Sbjct: 460 LGEIQRLAEREPVAAVRDLI 479


>gi|13476580|ref|NP_108150.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
 gi|14027342|dbj|BAB53611.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
          Length = 697

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 119/732 (16%), Positives = 214/732 (29%), Gaps = 128/732 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    + +  E I  ++       ++D   +       G   +   A    L  A    
Sbjct: 80  RRAASEMAKRVERIAGEVLGRDAAVITDALTWAGTFHGIGARLLRDYALEIGLDPAFTIH 139

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F+  +    T+        +  +   +Q    ++         
Sbjct: 140 DREDSADLMNLARHELGFSKTEARFPTKGT---CLAIYSRAVNAQAPLNEVLGS-----A 191

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           F          K L A Y EAK+   VLD++DL++    +  + +++      +    +H
Sbjct: 192 FPWCAGWAEQLKQLFAGYVEAKQAQNVLDYDDLLLYWAQMTAEPEIAE----HLGSRFDH 247

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++ +L                L  VGD+ QSIYSF  AE + +L 
Sbjct: 248 VLVDEYQDTNRLQASILMAL----------KPDGAGLTVVGDDAQSIYSFRAAEVRNILD 297

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             R   + A        ++ L  ++RST  IL   + V          +  S      + 
Sbjct: 298 FPRQFAQAAD-------VVMLERNYRSTETILAAANAVIGEASERFTKNLWSERKSTDKP 350

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             +     V+                                    A  +  TI      
Sbjct: 351 RLVSVRDEVE-----------------------------------QANFVCDTILAEREA 375

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T            K   VL R    +  +            I  V        D   +K
Sbjct: 376 GTAL----------KSQAVLFRASHHSGPLEIEL----TRRNIPFVKFGGLKFLDAAHVK 421

Query: 420 DLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           D++A+ RF  +  D ++   +L+  P    S              E +     +      
Sbjct: 422 DVLAVLRFAENPRDRVAGFRVLQLMPGIGPSAAAQIVETMTTALDEAMGLAGWRPPQRAA 481

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +   +     L   A    P D   + L  +   ++          D+L       L 
Sbjct: 482 DDWPGFVSLYSGLR--AGAKWPADLEQVRLWYEPHLERIHEDAITRRADLLQ------LE 533

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
              + Y+S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++T 
Sbjct: 534 QIGSGYASRERFLTELTLDPPDATSDQAGPPHRDEDYLILSTIHSAKGQEWKNVFVLNTV 593

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                         K   EE  RLLYV 
Sbjct: 594 DGCIPADLGVGT----------------------------------KEDIEEERRLLYVA 619

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA D L +          ++ +   +     +      +       S    +      
Sbjct: 620 MTRAKDSLNLVMPQRFFPHGQAARGDRHLYASRTRFIPASILSAFQQMSWPGAQAAQGRA 679

Query: 715 STHHPENTPLER 726
                      R
Sbjct: 680 PRPDVRVDIGAR 691


>gi|323139146|ref|ZP_08074203.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322395617|gb|EFX98161.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 718

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 114/697 (16%), Positives = 206/697 (29%), Gaps = 145/697 (20%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--------TLQ 54
            R    +    E I  +        +++   +       G   + + A         T+ 
Sbjct: 99  RRAAAEMTRRVERICAEALGASAGILTNGLAWAGTFHGVGARLLREYAGGIGLNADFTIH 158

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQK----NIITQEINKKSPDLKEKLKKSQDEFIKI 110
                  +         F  T+   P K     I ++ +N++ P L + L+         
Sbjct: 159 DREDAADLMNLVRHELGFSKTESRFPTKGTCLAIYSRAVNEELP-LDDVLESFFPWCAGW 217

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           R +                   L A Y EAK+   VLD++DL++     L +  ++  I 
Sbjct: 218 RAQLR----------------ELFAAYVEAKQTQNVLDYDDLLLYWAQTLGEPALAEDI- 260

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                  +H+L+DE QDT+ +Q  ++ ++              R L  VGD+ QSIYSF 
Sbjct: 261 ---GGRFDHVLVDEYQDTNRLQSSILLAM----------KPGGRGLTVVGDDAQSIYSFR 307

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            A  + +L                  I+ L  ++RST  IL   + V  +       +  
Sbjct: 308 AATVRNILDFPNAF-------TPPADIVTLDRNYRSTQPILAAANCVIELASERFTKN-- 358

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                              LW +  S    +     +               +  AR + 
Sbjct: 359 -------------------LWTERQSVEKPRLITVPD--------------EADQARYVV 385

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +                  + K   VL R    +  +            I  V     
Sbjct: 386 ERVLEDREIG----------ARLKQQAVLFRASHHSGPLELEL----TRRNIPFVKFGGL 431

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEY 469
              D   +KD++AL RF  +  D ++   +++  P    +                    
Sbjct: 432 KFLDSAHVKDMLALLRFAQNPRDRVAGFRLMQLLPGVGPASAQRVLDLMAEQPDPLSSLS 491

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                      +   ++ +  L               I GA++  +  + R   +    L
Sbjct: 492 DIPAPPRSGDAWTGFVETLQHLRTGKAGWP-----AEIAGARRWYEPHLERIHEDAATRL 546

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLES 585
            + L          Y S +  ++EL   PP     H+     + + + + T+H+AKG E 
Sbjct: 547 ADLLQL--EQMAAGYPSRERFLTELTLDPPDATSDHAGAPLLDEDYLILSTIHSAKGQEW 604

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+++                                           +     +  E
Sbjct: 605 KSVFVLNAVDGCIPSD----------------------------------LGAGTTAEIE 630

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
           E  RLLYV MTRA D L +          +  Q   +
Sbjct: 631 EERRLLYVAMTRAKDSLHLITPQRFFTHGQHPQGDRH 667


>gi|311087345|gb|ADP67425.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola str.
            JF99 (Acyrthosiphon pisum)]
          Length = 1174

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 132/836 (15%), Positives = 279/836 (33%), Gaps = 133/836 (15%)

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            + F DL+     LLK      +++  I ++     IDE QDT + Q+++   L +     
Sbjct: 350  IGFNDLLS---ILLKTIKKEKFLKDLIIKKYPAAFIDEFQDTDIQQYKIFNLLYKK---- 402

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                +    LF +GD KQ+IYSF GA+    L  K   +K             L  ++RS
Sbjct: 403  ----NKTTVLFLIGDPKQAIYSFRGADIFSYLYAKSKIKKYY----------YLDTNWRS 448

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            + +I   ++ +FS   N           +   S  +    T+          +       
Sbjct: 449  SINICKSINFLFSQNINPFIFKNIPFIPVVPSSKNLKMNFTI----------NDVAQTPI 498

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVR 381
              +      +  +     +A++ A  IS  +     G   I +   ++++ A DI +LVR
Sbjct: 499  SFFLQEEKEVSIDDYQVWIAKQCANEISFWLTCAKTGKAKITTKNGEKILTANDIAILVR 558

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             RK+  LI      L     IS+  +++  +   L  ++L+ +   IL  E+++     +
Sbjct: 559  NRKEADLIQDELEKL---NIISIYSSNKNSVFQTLDAQELLWILESILEPENEILLQQSM 615

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +    +  +           + +   + +    I +   V + I  +I   Q  S  
Sbjct: 616  ASHI--LKKLSLVVENKTISNKNSYFIIEKLYEYHDIWEKIGVFQMIKIMILEYQKNSFC 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
                             +   N     + E L    +      S ++    ++       
Sbjct: 674  TEINE------------NHIKNLNFLHIGELLQEQFQFFHKKISLIRWFQKKISTKTQPE 721

Query: 562  KRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                         ++I+T+H +KGLE P+V++       FS    K    +         
Sbjct: 722  YNESIKCFDESPSIKIITIHKSKGLEYPIVWIP------FSIDFKKSTLAIYHDQ----- 770

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN--EKKS 676
                 ++    N  +  +K   +    E  R LYV +TR+     I          + ++
Sbjct: 771  --KSLKTFFDENYSNKFLKIADEERLAEDIRFLYVALTRSILHCSIGLACLIKKIIKNRN 828

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL--- 733
            N       +  +    + +    L   + K     +    ++ +N    R+     L   
Sbjct: 829  NSDIHQSGLGFTIQGGKTMNYEGLLEKLKKLSINNFIEVKNNTDNFSFSRKPQTISLICK 888

Query: 734  ---MDEQKIPKKLFSPIKNDINEPYILNPSTI------------DTKGKTNLESLLSDNQ 778
               ++++ I         + +N+   L+                  K   +L ++ +  +
Sbjct: 889  NKFLNKKNIRNTWSITSFSQLNKINKLSKHHQKEVALKELCIKNQEKKNQSLLTIHNFPK 948

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-- 836
                GL+IH +L+ +  + ++K  N+ +    K       K    L+  I  ++  P+  
Sbjct: 949  GKKTGLMIHYILKNL-HVLKNKNSNWFSCILEKYNIHI--KWTSVLIYWIKNIINTPLND 1005

Query: 837  ----MTTAMSCDSYSEVSV--------------------------SGKINCPKKDIIISG 866
                ++      S  E+                            S +++      +++G
Sbjct: 1006 EKIILSRIDEKSSIRELEFFFPIKNMLYSTELNKIIQSINPTSITSPQLSFNPVKGMLTG 1065

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
             +D + I ++  +I +YK++                E +   +  Q  IY   +  
Sbjct: 1066 FVDLVFIWKKKYYILDYKSNWLGKNNNFYSSIHINKEIVKKRYHLQYQIYTIAIHK 1121


>gi|317179739|dbj|BAJ57527.1| helicase [Helicobacter pylori F30]
          Length = 949

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 135/890 (15%), Positives = 271/890 (30%), Gaps = 175/890 (19%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
            +T    ++T    + F    +  LT      + I  +++  + P L+ + ++ +++  +
Sbjct: 226 IETASDRAKTAIKCDDFRGFLNSSLTWLEKKSEYIYFKKLKNEIPTLESECEEIENDLKR 285

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SA 167
             +   T        A           Y++A  K   LDF+ +    + LL   +   + 
Sbjct: 286 YYEARET--------AIFKKFPKFIQLYDKATSKIQALDFDAIKDKVHALLNGYEEMPAE 337

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
           +  +++D +I HILIDE QDTSL  ++++    ++   G       R++F VGD KQSIY
Sbjct: 338 FFYFRLDSKIAHILIDEFQDTSLNDYKILAPFIDEIKAGIGQAKWQRSVFFVGDVKQSIY 397

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F G+                 +  + F    L  + RS+  I+  V+ +F         
Sbjct: 398 GFRGS-----------FSSLFESVSKDFYHDNLQFNHRSSPLIINYVNTIFKKAYQNSPT 446

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           +       +  S++  + G V++                                 +L +
Sbjct: 447 AYLEQKYPKASSNKHAKDGYVKVSLVA-------------------------DERELLLK 481

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
           +I     N++             I  KDI +L  + KD   I    +   +  + S   +
Sbjct: 482 QILQEAKNLLEH----------RIDPKDITLLCARNKDALEIKNYLQENLSAIRPSTESS 531

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            +        I                     +LK  L  +  DD   +     + E+V 
Sbjct: 532 AKLSQFVESKIIKNALEYALAEEPYKPFYKHSVLK--LAGYLHDDAIALVGFNPKKESVA 589

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
            ++ K                                  +        Q          D
Sbjct: 590 GFVWK-------------------------------VMELFELYGECAQICLELAVGCED 618

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
             DEFL      E  S+                            +IMT+H +KG++ P 
Sbjct: 619 A-DEFLKKLEAKEIASFKI-----------------------EGAQIMTIHKSKGMQFPY 654

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS-RNNIVSDLIKHLKKSTQEE 646
           V +           +     +      +     +  +++   +   +  +   + +   E
Sbjct: 655 VIV--CERLGKPKTNNSNQFLEEYSGTELTCLYYRMKNREVVDKDYARALDKEEAAKDHE 712

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              + YV  TRA   LI+        + K   +             E  +   +  S  +
Sbjct: 713 ETNVYYVAFTRAELGLIVVAKDKDQKKDKKESKNKGMREKLDLAPLEEGEIAPVIYSQKE 772

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
               +     H       E EE                              PS  +   
Sbjct: 773 PSIPSVLIKPHAYGEQVQEIEEE-----------------------------PSDYEKNN 803

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                    D +  N G+ +HK L+       +  K  +  Y   +   +   +Y+ L  
Sbjct: 804 ---------DQEAINFGIALHKGLEY--QYAYNIPKESVLEYLNYHHGFYGL-DYQALEE 851

Query: 827 SITRLLENPMMTTAMSCDSYS-EVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYK 884
           S+     +  +       +   EV+         + ++   RID +   +   +++ +YK
Sbjct: 852 SLELFENDAKIQALFKNLALRGEVAF------LFEGVV--SRIDVLLWDKGQNLYVLDYK 903

Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
           +  +          +H AQ+S Y   L+   P   +   +IY +  ++  
Sbjct: 904 SSQN-------YQQSHKAQVSHYAAFLQTQAPYFKIQAGIIY-AHKRLLE 945


>gi|241953371|ref|XP_002419407.1| ATP-dependent DNA helicase, putative [Candida dubliniensis CD36]
 gi|223642747|emb|CAX43001.1| ATP-dependent DNA helicase, putative [Candida dubliniensis CD36]
          Length = 859

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 88/602 (14%), Positives = 171/602 (28%), Gaps = 146/602 (24%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
              +L   Y+ +      LDF+D ++  + L+K   V  +        I H+L+DE QDT
Sbjct: 200 ALAFLYNKYQASLADLKKLDFDDCLLECHKLVKNFPVLNY--------IKHVLVDEFQDT 251

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ +++    +    G         +  VGD  Q IY+F  A+     +     +   
Sbjct: 252 NEIQLQLMYHFAKGNINGD--PKYQNNVTIVGDPDQGIYAFRDAQSINFEKMSNHYKS-- 307

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I L  ++RST+ IL + + + +  +        S      +          
Sbjct: 308 --MKLSLHKISLNENYRSTSGILNISETLMNQQKGRTPKLLKSQLDFSIKPVYSCL---- 361

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                                           SA   A+ I Y IS+++           
Sbjct: 362 -------------------------------KSAQEEAKWIVYQISHLLS-------LPN 383

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             +Q KDI VL R    +  +            +           D   +  +M   +  
Sbjct: 384 SAVQGKDIAVLYRAAYQSRALEDEL----VKKGLPYKMIRGRAFWDRQEVIAIMDYLKVC 439

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIF----KICTQRHETETVYE---------------- 468
             + +  + +  L  P        +      I  Q ++ ++V++                
Sbjct: 440 SDENEQAAVIRTLNYPKRGLGPKTVESLGKIIEKQANQGKSVHQCLLAMTKKSGEPKIKL 499

Query: 469 -----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                   +     ++K +  +  +             + F LI    K +Q+F +   +
Sbjct: 500 TIKQLQSVEEYYSMVTKVKSKLDEMKNCPDEDISNHAKELFDLIYEKSKLKQEFENDEDS 559

Query: 524 EVIDVLDEFLNFTLRN------------------EQNSYSSLQELISELEQYPPTIKRAH 565
                ++E  N  ++                   E+ S      L   +E          
Sbjct: 560 SKRLNVEEVGNLLVQFKPKDEILPDYIDGSGDVEEEESVDDRNFLARFIESVGLYETNDE 619

Query: 566 S--------------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                             + + + T+H +KGLE PVVF+      +       +      
Sbjct: 620 VENNKSDSNGNDKAKEEKSCISLSTIHGSKGLEWPVVFVQGLSEGLLPAGFSMRNSFND- 678

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                             E  R  YV +TR    L I  ++ + 
Sbjct: 679 ----------------------------NDENLNEERRCFYVAVTRTKVLLYISSYTESQ 710

Query: 672 NE 673
           ++
Sbjct: 711 SK 712


>gi|295696820|ref|YP_003590058.1| UvrD/REP helicase [Bacillus tusciae DSM 2912]
 gi|295412422|gb|ADG06914.1| UvrD/REP helicase [Bacillus tusciae DSM 2912]
          Length = 740

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 102/674 (15%), Positives = 219/674 (32%), Gaps = 118/674 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  +  +   +  +P P     D +   SL+ +        +   ++          + +
Sbjct: 75  AATDMKQRF-QQFFPGPAAGGVDFSTIHSLAFQ--VVQEHFRRAGIKYRVIEGDAGGQVA 131

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             S   L  K    + +  + + +   +  ++L++       ++++    +        +
Sbjct: 132 SGSHPGLPHKRQILRELYRRIVGENLTE--DQLEELTTYITFVKNKLVPVERLAHVHCDV 189

Query: 128 TLAKYLNAHYEEAKKKNC---VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
             A+ +   YE  K+      ++D++D+++  N +LKK +    +  K     ++IL DE
Sbjct: 190 PEAQRIFREYEAFKRAEAGWLLIDYDDMLVMANRILKKDEE---LLKKYQARYDYILTDE 246

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDTSL+Q  +I  L  D             L  V D+ QSIY +  AEPK +L  K++ 
Sbjct: 247 SQDTSLVQHAIIEKLARD----------HENLCVVADDDQSIYGWRAAEPKYLLDFKKVY 296

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +          I+++  ++RS+ +I+ V ++     +N    +  +     HR      
Sbjct: 297 PRAL--------ILKMEQNYRSSKNIVHVANQFIKRNKNRYDKNMFTFNP-PHR------ 341

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                                        D           A+ +   IS +        
Sbjct: 342 ---------------------DIVIQDLVDY-------RQQAKYVVEQISQL-------- 365

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMA 423
                     +  VL R R  +           +   I     D       H  ++D++ 
Sbjct: 366 ------ENPHEAAVLYRNRSSSIP----LVNELDRRGIPFCIKDADNGFFSHWVVQDILN 415

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
             R   + +       +        ++  +  +    +        ++            
Sbjct: 416 FMRMAYTDKRPDLLEKIYPKLNGYITKQQMAALKEIHNHESVFDNLVRIVGVKDYQIGP- 474

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQ 541
            ++   ++    +  +P +   +I          ++         + L   +N       
Sbjct: 475 -LQTCKKMFAEMKGLTPVEAIAVIRRDLGYEHTLMNMSERLGFRKEHLIGIVNTLEEI-A 532

Query: 542 NSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +   SL+E  + L+    T+K +    + + V + T+H+AKGLE   V+++D    V   
Sbjct: 533 DGLGSLEEFANRLQHLENTMKASSRRMDAHAVTLSTLHSAKGLEFDRVYIIDLIEGVLPS 592

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              +++   +  EE  RL YVGMTRA  
Sbjct: 593 NDDI-----------------------------QRLRNKDSAAMEEAARLFYVGMTRAKT 623

Query: 661 QLIICKHSNTSNEK 674
            L +  + N    K
Sbjct: 624 HLELVTYRNKDGGK 637


>gi|238880904|gb|EEQ44542.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 864

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 87/596 (14%), Positives = 164/596 (27%), Gaps = 146/596 (24%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
              +    Y+        LDF+D ++  + L++   V  +        I H+L+DE QDT
Sbjct: 201 ALAFFYEKYQALLTDLKKLDFDDCLLECHRLVENFPVLNY--------IKHVLVDEFQDT 252

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ  ++    +    G         +  VGD  Q IY+F  A+     +      K  
Sbjct: 253 NEIQLRLMYHFAKGNTNGD--PKYQNNVTIVGDPDQGIYAFRDAQSINFEKMSTHYTKL- 309

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I L  ++RST+ IL + + + +  +        S      +          
Sbjct: 310 ---NLSLDKISLNENYRSTSSILNISESLMNQQKGRMPKMLKSQLDSSIKPVYSCLNSAK 366

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +                                    A+ I Y IS+++           
Sbjct: 367 E-----------------------------------EAKWIVYQISHLLS-------LPN 384

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             +Q KDI VL R    +  +            +S          D   +  +M   +  
Sbjct: 385 SAVQEKDIAVLFRAAYQSRALEDEL----VKRGLSYKMIRGKAFWDRQEVIAIMDYMKVC 440

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ----------------- 471
             + +  + +  L  P        +  I     +     + +                  
Sbjct: 441 SDEYEQAAVIRTLNYPKRGIGSKTLDNIEKIIEKRVKQGKSVHQCLLAMTKKSEEPEIKL 500

Query: 472 --------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                   +     I+K +  +  +  L       +  + F LI  + K +Q+F +    
Sbjct: 501 TKKQIQGVEEYYTMITKVKKKLSKMEGLSDEDITNTAKELFDLIYESSKLKQEFENDEER 560

Query: 524 EVIDVLDEFLNFTLRN------------------------------EQNSYSSLQELISE 553
                ++E  N  ++                               +      L E   E
Sbjct: 561 SKRLNVEEVGNLLVQFKPKDEILPDYIGGDIEDDDAVDEGDRNFLAQFIESVGLYETNDE 620

Query: 554 LEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           +E+         +     + + + T+H +KGLE PVVF+      +       +      
Sbjct: 621 VEKNGSESTGDDTAKEEKSCISLSTIHGSKGLEWPVVFVQGLTDGLLPAGFSFRNSFGD- 679

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                             E  R  YV +TRA   L I  +
Sbjct: 680 ----------------------------NDENLNEERRCFYVAVTRAKVLLYISSY 707


>gi|15678539|ref|NP_275654.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621583|gb|AAB85017.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 683

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 107/625 (17%), Positives = 202/625 (32%), Gaps = 103/625 (16%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
            ++ P ++    + Q+  +        Y+   +    +T+A+     Y     +N +LDF
Sbjct: 137 RERFPLIQGFFSECQENMVDPETLIQHYRNKGAGRFEMTVAEA-YQRYLNLMDENGLLDF 195

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
             +      LL+     + I   +      +++DE QDT+ IQ   +  L  +       
Sbjct: 196 AGMQWRVVRLLEND---SKILDDLRSRYRFLMVDEYQDTNQIQERFLELLAGE------- 245

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 +FAVGDE QSIY F G+ P+  L  ++              ++ L  +FRS   
Sbjct: 246 ---ECNIFAVGDEDQSIYGFRGSTPENFLGFQKKYG---------AEVVMLEKNFRSVPS 293

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+ V  +                             G  +  + +    DS+        
Sbjct: 294 IVDVTQRFMD--------------------------GYREYPKDIRPVRDSENRVFILDN 327

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
            ++ D              +   I  ++    I   G         + +L R  K   + 
Sbjct: 328 PTHQDEPSN----------VVGIIRALVDHGVIPHQGY--------VTLLFRSVKHDAV- 368

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF---VCMLKSPLF 446
                       I           D   I  +M L     ++   +        L+    
Sbjct: 369 --EIMNELRREGIPFNVYGEGGFFDREEILYIMHLLHHTRNERRKIIRKLKYEHLEGEFM 426

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
           + +   + +I     E        ++F   G +    + K +     I       + +  
Sbjct: 427 DLTPGSVNRILDMDEEELRGLREHREFRGAGFTDPDDIRKLVALNRLIDSDLGVLERYYE 486

Query: 507 ILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIK 562
           IL   +   + + R  +E  +    L  F +     E+ +    ++ L+  +        
Sbjct: 487 ILELTEYPHRLLERGDDESREKLYNLARFSSLIKDYERISLEPGVEGLMEFIRMAMSGRI 546

Query: 563 RAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
           + +      N   V IMT+H AKGLE PVV +    +  F  K                 
Sbjct: 547 KKYDQILLDNPYSVNIMTMHRAKGLEFPVVIICSVFNGKFPRKV---------------- 590

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                + +S   +  +L +   ++ + E  RL YVGMTRA D LI+    N         
Sbjct: 591 -----RERSELELPEELRRSTMRTDEIEERRLFYVGMTRAQDMLIVSATKNHRGRIG-YS 644

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNS 703
               D++  S    +R+ +I   ++
Sbjct: 645 EFIEDLIKTSRITSDRLGRIDPEDA 669


>gi|115524887|ref|YP_781798.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
 gi|115518834|gb|ABJ06818.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53]
          Length = 700

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 113/732 (15%), Positives = 211/732 (28%), Gaps = 129/732 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--QQASQTQ 60
            R    +    E I +     P   ++    +       G   + ++A+ L         
Sbjct: 84  RRAASEMIRRVERIARKAIGEPAAIMTGAMSWAGTFHGVGARLLRERAEQLGLDPGFTIH 143

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F+  +    T+        +  +   ++    ++   +  +  
Sbjct: 144 DREDAADLINLVRHQLGFSKTESRFPTKGT---CLSIYSRCVNAEAPIEQVLGSWFPWCA 200

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             +T       K L A Y EAK++  VLD++DL++     ++    +A     +    +H
Sbjct: 201 GWATE-----LKQLFAGYVEAKQQQNVLDYDDLLLYWAQAMRDPSFAAD----LASRFDH 251

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++ +L                L  VGD+ QSIY+F  A  + +L 
Sbjct: 252 VLVDEYQDTNALQSSILLAL----------KPDGIGLTVVGDDAQSIYAFRAATVRNILD 301

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                         + +I+ L  ++RST  IL   + V  + +     +  S        
Sbjct: 302 FPNQFS-------PRATIVTLDRNYRSTQGILKAANGVIELAKERFTKNLWSDR------ 348

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                              +    P   +     D           AR I   +     T
Sbjct: 349 -------------------EDGTRPLLVAVRDEADQ----------ARYIVDRVLETRET 379

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             +           K   VL R    +  +            I  V        D   +K
Sbjct: 380 GALL----------KQQAVLFRTSSHSGPLEIEL----TRRNIPFVKFGGLKFLDAAHVK 425

Query: 420 DLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           DL+AL RF  +  D ++   +L+                                     
Sbjct: 426 DLLALLRFAQNPRDRVAGFRVLQLLQGVGPGSAQKLLDHIAAAADPIGALIAAPAPPRAG 485

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             ++  +  I EL        P D     L  +    +            L +       
Sbjct: 486 VAWRDFVATISELR---HSDWPSDLERARLWYEPHLDRI-HEDAPTRRADLIQLEQIAAG 541

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
                  S +  ++EL   PP      +     + + + + T+H+AKG E   V++++  
Sbjct: 542 Y-----PSRERFLTELTLDPPDATSDQAGVALRDEDYLILSTIHSAKGQEWKSVYVLNVV 596

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                          +  EE  RLLYV 
Sbjct: 597 DGCLPSDLGTGSS----------------------------------AEIEEERRLLYVA 622

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA D L +          ++ Q   +     S      +  +    S       A   
Sbjct: 623 MTRARDDLHLVVPQRFFTHGQAAQGDRHVYAARSRFIPASLLDLFERVSWPPAIADAASA 682

Query: 715 STHHPENTPLER 726
            ++ P      +
Sbjct: 683 RSNGPPLDIGAQ 694


>gi|149187526|ref|ZP_01865823.1| UvrD/REP helicase [Vibrio shilonii AK1]
 gi|148838406|gb|EDL55346.1| UvrD/REP helicase [Vibrio shilonii AK1]
          Length = 690

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 102/671 (15%), Positives = 209/671 (31%), Gaps = 132/671 (19%)

Query: 3   NRFGLSLNESYELIY----KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
                  N   E       K   P+    +   +   +  +      I      L+    
Sbjct: 73  AELASRANRIAEQQLNEQRKQYHPVKLDWMGTFHSIAARMLREHAALI-----GLESDFT 127

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                +   +L        FT       ++  K   ++  +   SQ    ++  ++    
Sbjct: 128 IMDRNDAADMLDVLRFELGFTNTDRRFPKK--KTCLEIYSRCVNSQTAVEEVVAQY---- 181

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            F       +  K L A Y E K +   LD++DL++    + +  +++     K+  + +
Sbjct: 182 -FPYCAEWSSELKILFAQYAEQKAEQFCLDYDDLLLYCFHMAQVPEIA----NKVRAQFD 236

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            IL+DE QDT+L+Q  ++++               R L  VGD+ QSIY F  A    +L
Sbjct: 237 FILVDEYQDTNLLQAGMLKAFF----------PDGRGLTVVGDDAQSIYGFRAASVDNIL 286

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +              +I L  ++RS   IL + +++ +  +                
Sbjct: 287 EFPQQFS-------PPAKVIMLTTNYRSHQGILDLSNQLLNEGQ---------------- 323

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                +   V+L  +       Q    ++               +  A  I  +I     
Sbjct: 324 -----EGYKVELHSERKQGPKPQLVTVEDD--------------AKQAEYIVESILRARE 364

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                       I+ K   VL R    +  +            I  V +      +   +
Sbjct: 365 EG----------IELKRQAVLFRSSYHSDRLELEL----TRRDIPYVKHGGLKFLEAAHV 410

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           KDL+++ R+  + +  +S   +LK  L          I       +  +  +        
Sbjct: 411 KDLLSILRWADNPKHTISAFRVLK-LLAGIGPKTANNIIEHLKAHQYQFSALSDCKVPFS 469

Query: 479 SKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
           ++       +  L+ I +      +  +L+        +            +++ +  + 
Sbjct: 470 AR-AEFKTLVESLLTINSNAVPWAEQLSLLATLYSPLLELNYDDHFVRWGDVEQLVMISG 528

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593
           +         +  ++EL   PP      ++    + + + + TVH+AKG E   V++++ 
Sbjct: 529 QYSTR-----ERFLTELTLDPPQSTGDLASNPKIDDDFLILSTVHSAKGQEWQNVYVLNV 583

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               F ++                                       K   EE  RLLYV
Sbjct: 584 ADGNFPNE----------------------------------YAVGDKRALEEERRLLYV 609

Query: 654 GMTRASDQLII 664
            MTRA  +L +
Sbjct: 610 AMTRAKQELHL 620


>gi|257471507|ref|ZP_05635506.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola str.
            LSR1 (Acyrthosiphon pisum)]
          Length = 1174

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 132/836 (15%), Positives = 279/836 (33%), Gaps = 133/836 (15%)

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            + F DL+     LLK      +++  I ++     IDE QDT + Q+++   L +     
Sbjct: 350  IGFNDLLS---ILLKTIKKEKFLKDLIIKKYPAAFIDEFQDTDIQQYKIFNLLYKK---- 402

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                +    LF +GD KQ+IYSF GA+    L  K   +K             L  ++RS
Sbjct: 403  ----NKTTVLFLIGDPKQAIYSFRGADIFSYLYAKSKIKKYY----------YLDTNWRS 448

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            + +I   ++ +FS   N           +   S  +    T+          +       
Sbjct: 449  SINICKSINFLFSQNINPFIFKNIPFIPVVPSSKNLKMNFTI----------NDVAQTPI 498

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVR 381
              +      +  +     +A++ A  IS  +     G   I +   ++++ A DI +LVR
Sbjct: 499  SFFLQEEKEVSIDDYQVWIAKQCANEISFWLTCAKTGKAKITTKNGEKILTANDIAILVR 558

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             RK+  LI      L     IS+  +++  +   L  ++L+ +   IL  E+++     +
Sbjct: 559  NRKEADLIQDELEKL---NIISIYSSNKNSVFQTLDAQELLWILESILEPENEILLQQSM 615

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +    +  +           + +   + +    I +   V + I  +I   Q  S  
Sbjct: 616  ASHI--LKKLSLVVENKTISNKNSYFIIEKLYEYHDIWEKIGVFQMIKIMILEYQKNSFC 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
                             +   N     + E L    +      S ++    ++       
Sbjct: 674  TEINE------------NHIKNLNFLHIGELLQEQFQFFHKKISLIRWFQKKISTKTQPE 721

Query: 562  KRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                         ++I+T+H +KGLE P+V++       FS    K    +         
Sbjct: 722  YNESIKCFDESPSIKIITIHKSKGLEYPIVWIP------FSIDFKKSTLAIYHDQ----- 770

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN--EKKS 676
                 ++    N  +  +K   +    E  R LYV +TR+     I          + ++
Sbjct: 771  --KSLKTFFDENYSNKFLKIADEERLAEDIRFLYVALTRSILHCSIGLACLIKKIIKNRN 828

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL--- 733
            N       +  +    + +    L   + K     +    ++ +N    R+     L   
Sbjct: 829  NSDIHQSGLGFTIQGGKTMNYEGLLEKLKKLSINNFIEVKNNTDNFSFSRKPQTISLICK 888

Query: 734  ---MDEQKIPKKLFSPIKNDINEPYILNPSTI------------DTKGKTNLESLLSDNQ 778
               ++++ I         + +N+   L+                  K   +L ++ +  +
Sbjct: 889  NKFLNKKNIRNTWSITSFSQLNKINKLSKHYQKEVALKELCIKNQEKKNQSLLTIHNFPK 948

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-- 836
                GL+IH +L+ +  + ++K  N+ +    K       K    L+  I  ++  P+  
Sbjct: 949  GKKTGLMIHYILKNL-HVLKNKNSNWFSCILEKYNIHI--KWTSVLIYWIKNIINTPLND 1005

Query: 837  ----MTTAMSCDSYSEVSV--------------------------SGKINCPKKDIIISG 866
                ++      S  E+                            S +++      +++G
Sbjct: 1006 EKIILSRIDEKSSIRELEFFFPIKNMLYSTELNKIIQSINPTSITSPQLSFNPVKGMLTG 1065

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
             +D + I ++  +I +YK++                E +   +  Q  IY   +  
Sbjct: 1066 FVDLVFIWKKKYYILDYKSNWLGKNNNFYSSIHINKEIVKKRYHLQYQIYTIAIHK 1121


>gi|219681805|ref|YP_002468191.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola str.
            5A (Acyrthosiphon pisum)]
 gi|219624648|gb|ACL30803.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola str.
            5A (Acyrthosiphon pisum)]
          Length = 1174

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 132/836 (15%), Positives = 279/836 (33%), Gaps = 133/836 (15%)

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            + F DL+     LLK      +++  I ++     IDE QDT + Q+++   L +     
Sbjct: 350  IGFNDLLS---ILLKTIKKEKFLKDLIIKKYPAAFIDEFQDTDIQQYKIFNLLYKK---- 402

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                +    LF +GD KQ+IYSF GA+    L  K   +K             L  ++RS
Sbjct: 403  ----NKTTVLFLIGDPKQAIYSFRGADIFSYLYAKSKIKKYY----------YLDTNWRS 448

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            + +I   ++ +FS   N           +   S  +    T+          +       
Sbjct: 449  SINICKSINFLFSQNINPFIFKNIPFIPVVPSSKNLKMNFTI----------NDVAQTPI 498

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVR 381
              +      +  +     +A++ A  IS  +     G   I +   ++++ A DI +LVR
Sbjct: 499  SFFLQEEKEVSIDDYQVWIAKQCANEISFWLTCAKTGKAKITTKNGEKILTANDIAILVR 558

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             RK+  LI      L     IS+  +++  +   L  ++L+ +   IL  E+++     +
Sbjct: 559  NRKEADLIQDELEKL---NIISIYSSNKNSVFQTLDAQELLWILESILEPENEILLQQSM 615

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +    +  +           + +   + +    I +   V + I  +I   Q  S  
Sbjct: 616  ASHI--LKKLSLVVENKTISNKNSYFIIEKLYEYHDIWEKIGVFQMIKIMILEYQKNSFC 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
                             +   N     + E L    +      S ++    ++       
Sbjct: 674  TEINE------------NHIKNLNFLHIGELLQEQFQFFHKKISLIRWFQKKISTKTQPE 721

Query: 562  KRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                         ++I+T+H +KGLE P+V++       FS    K    +         
Sbjct: 722  YNESIKCFDESPSIKIITIHKSKGLEYPIVWIP------FSIDFKKSTLAIYHDQ----- 770

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN--EKKS 676
                 ++    N  +  +K   +    E  R LYV +TR+     I          + ++
Sbjct: 771  --KSLKTFFDENYSNKFLKIADEERLAEDIRFLYVALTRSILHCSIGLACLIKKIIKNRN 828

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL--- 733
            N       +  +    + +    L   + K     +    ++ +N    R+     L   
Sbjct: 829  NSDIHQSGLGFTIQGGKTMNYEGLLEKLKKLSINNFIEVKNNTDNFSFSRKPQTISLICK 888

Query: 734  ---MDEQKIPKKLFSPIKNDINEPYILNPSTI------------DTKGKTNLESLLSDNQ 778
               ++++ I         + +N+   L+                  K   +L ++ +  +
Sbjct: 889  NKFLNKKNIRNTWSITSFSQLNKINKLSKHYQKEVALKELCIKNQEKKNQSLLTIHNFPK 948

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-- 836
                GL+IH +L+ +  + ++K  N+ +    K       K    L+  I  ++  P+  
Sbjct: 949  GKKTGLMIHYILKNL-HVLKNKNSNWFSCILEKYNIHI--KWTSVLIYWIKNIINTPLND 1005

Query: 837  ----MTTAMSCDSYSEVSV--------------------------SGKINCPKKDIIISG 866
                ++      S  E+                            S +++      +++G
Sbjct: 1006 EKIILSRIDEKSSIRELEFFFPIKNMLYSTELNKIIQSINPTSITSPQLSFNPVKGMLTG 1065

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
             +D + I ++  +I +YK++                E +   +  Q  IY   +  
Sbjct: 1066 FVDLVFIWKKKYYILDYKSNWLGKNNNFYSSIHINKEIVKKRYHLQYQIYTIAIHK 1121


>gi|328944201|ref|ZP_08241665.1| hypothetical protein HMPREF0091_10890 [Atopobium vaginae DSM 15829]
 gi|327491120|gb|EGF22895.1| hypothetical protein HMPREF0091_10890 [Atopobium vaginae DSM 15829]
          Length = 1253

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 107/644 (16%), Positives = 209/644 (32%), Gaps = 109/644 (16%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            + T+          ++LK  +++F    D      + ++    + +A++++  Y + K+
Sbjct: 295 ELRTKLPTSVGKAHAQELKTLKEDFACAHDSVRFLVLNRAFDLCVDIARHVDERYMQLKR 354

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  +LD +DLI  T  ++K     ++I  ++      +++DE QDT   Q E+I  L+  
Sbjct: 355 ECSMLDNDDLIHETLRVIKHN---SYIAAQLTNRFKLVMVDEFQDTDTAQLELISLLSGK 411

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    +   L  VGD +QSIY+F GA+           +KR            L +
Sbjct: 412 ---------NAEHLTTVGDAQQSIYAFRGADVSV-------FRKREATCPCALK---LCV 452

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS  DIL+ VDKV      +          +    +        +  +      +   
Sbjct: 453 NYRSHKDILSFVDKVCDAGTPSNPKQGLVQHFMHLDDNPTRDAHAYKAHDLPRLDVEMVK 512

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
            P +    +            +LA  +A  +   +              +  D+ +LVR 
Sbjct: 513 APFKRDVCA----------RKVLAAALAQRMYAYVKHGQ----------KPSDMALLVRS 552

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF-VCML 441
             +  +     R       ++ V +     T    ++ +  L   + +  D  +    +L
Sbjct: 553 ATNVDVYLDAIRA----RGLNCVVSGGSTFTSAPEVQVMAQLLHVLANPCDTQNGLFGLL 608

Query: 442 KSPLFNFSEDDIF----------KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            SPLF   E D+            +  +R     +             + Q     +   
Sbjct: 609 ISPLFALDEQDLLLLASMNQPTSDLPAKRPIDRGLEHMTFYKDMPCSLRLQRAHDILMRA 668

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--EVIDVLDEFL----NFTLRNEQNSYS 545
            +   + S  D    ++       +          V   +   L      T         
Sbjct: 669 RNELPYKSVADVCLDVVKQSGWLLRLEKAGTTTIPVRANIMAALRYIDELTKDLGLGPAR 728

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH--- 602
           + QE    L +           + + +++MTVH +KGLE P+VFL +  ++V +      
Sbjct: 729 AAQEFDIWLSRSKIAPASLAGDDQDSIQVMTVHASKGLEFPLVFLSEWYTEVPAAPRVMC 788

Query: 603 ------------------------------------------IKKMHIMPSLNDDPGIPI 620
                                                          +MP    D G+  
Sbjct: 789 VSVPKSSTKQPASTTKQPTHADAHSSSLDAQETAAKVACMLVPPSSDLMPHQKFDEGVVE 848

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                   +       +      +EE  R+LYVG+TRA + LI+
Sbjct: 849 EHAPVCY-SEWFEYGKRLASLRDREESARILYVGLTRAREALIV 891



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 11/159 (6%)

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNF-ITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
               +    G   H+L Q +         +  I   C        A + K L  ++ R   
Sbjct: 1076 DTTRATALGSAFHQLAQSMVESQNLFPSDEHIARMCA--YWKLSAAKEKRLRDALWRWWN 1133

Query: 834  NPMMTTAMSCDS-YSEVSVSGKINCPKKDIIISGRIDQISISQ--QNIFIFEYKTHHHVP 890
            + +    ++ D+  +EV    + +         G  D ++ S   ++  + +YKT     
Sbjct: 1134 SNIRREVLTYDTIRAEVPFCIQRDSAYGRYY-HGAFDLLATSASSRHALLIDYKTGDL-G 1191

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKS-LVCLLIYVS 928
               E I   H  Q  +Y  +L   +   + + C  + V 
Sbjct: 1192 LSKEEIAARHALQSQLYADVL--LHAGYTSVTCAFVCVE 1228


>gi|307328515|ref|ZP_07607689.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
 gi|306885783|gb|EFN16795.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
          Length = 1232

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 115/837 (13%), Positives = 224/837 (26%), Gaps = 139/837 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLS--------METGNPTILKKAQTLQQASQT 59
               + E   + +    +     + K   L         +          A+ L+ A   
Sbjct: 108 DPGATEEAAGEPVISTYHAFAGQLLKDHGLRVGLEPSARLLADATRFQLAARVLRSAPGP 167

Query: 60  QCIEER-FSLLSSFFLTQKFTPQKNIITQE-INKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                R FS L +  L       ++++  E +     +L   L+ ++     +R      
Sbjct: 168 YPALTRPFSDLVTDLLALDAELAEHLVPAERLRAYDTELLRTLEGARLTNEALRKVPEAA 227

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           +  +  L  +         Y E K++  +LDF D I ++  L         I   + ++ 
Sbjct: 228 RARQELLGLV-------EAYREEKRRRDLLDFGDQIAHSATLALDHPEVGRI---LREQF 277

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             +L+DE QDTS+ Q             G     +   + AVGD  Q+IY + GA    +
Sbjct: 278 AVVLLDEYQDTSVAQ--------RLLLSGLFGGGTGHPVTAVGDPCQAIYGWRGASVANL 329

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                  +              L  + RS   +L + + + +                  
Sbjct: 330 DDFPEHFR---HADNSPARRFALSENRRSGGRLLDLANGLAA------------------ 368

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
              R    G   L              +++               + LA  IA+ +    
Sbjct: 369 -PLRAMHEGVEALRPA--------PGAERDGAVRCALLPTHAEELAWLADSIAHLVRT-- 417

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                            +I VL R   D   I            I V       L     
Sbjct: 418 ------------GTPPGEIAVLCRTAGDFAQIQGALVE----RDIPVEVVGLSGLLHLPE 461

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH---------------- 461
           + DL+A+   +     + + V +L  P +     D+  +  +                  
Sbjct: 462 VADLVAVCEVLQDPGANAALVRLLTGPRWRIGPRDLALLGRRARALVFHGGPDGADDDPD 521

Query: 462 --------------------------ETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                                     E     +    F+     +F  +   + EL   +
Sbjct: 522 LRLAGAVEGTDPSEVISLADALDTFLEAGGGPDDGLPFSAEARIRFARLAAELRELR-RS 580

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQNSY-------S 545
                 D    +L       +  +          + L  FL+                 +
Sbjct: 581 LADPLMDVLHRVLATTGLEVELSASPHALAARRRETLGNFLDVAAAFAGREGGAAVEGEA 640

Query: 546 SLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           +LQ  +  L            A     N V+++T H +KGLE  VV +    ++ F  + 
Sbjct: 641 TLQGFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVAKQFPSEQ 700

Query: 603 IKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
            ++       ++P         +    +     I +     +K   + E  RL YV  TR
Sbjct: 701 SRESWTANAKVLPHELRGDARTLPDVTAWDSKGI-AAFKDAMKGHQRTEELRLGYVTFTR 759

Query: 658 ASDQLIICK-HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
               L+        + ++      + D + +         +          E  A   S 
Sbjct: 760 PRSLLLGSGHWWGPTQKRPRGPSAFLDALREHCEAGYGEVEAWAEPPEEGAENPALRASA 819

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                        ++       +     + I+     P   +       G    E +
Sbjct: 820 ADRAWPLPLDPAALRHRRRAADVVLAHLARIETAGEGPTAQDGGHSSADGGPFPEPM 876



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/276 (10%), Positives = 67/276 (24%), Gaps = 38/276 (13%)

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
             +         +        ++ +A E +         + +    +L   ++   ++  P
Sbjct: 927  HADPYGAPEPGVPDITREPAEDELAPEEARLASSWD-RDLDALAGELRRARETVHEVPLP 985

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV------IFTLPEHK 800
                 ++   L         +              RG   H  ++       +  L   +
Sbjct: 986  GTLTASQLLRLADDPDAFARELARPMPRPPRPAARRGTRFHAWVEARFEALSLPFLGPDE 1045

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                               + ++L          P           +   V   +     
Sbjct: 1046 LP-------GGEEDEAEIADERDLTALKEAFARTPYAR-------RTPYRVEVPVQLTLA 1091

Query: 861  DIIISGRIDQISISQQ-------NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
              II GRID +  +            I ++KT      +          QL+IY     +
Sbjct: 1092 GRIIRGRIDAVYRASGSGPDGGPRYEIVDWKTGRSQDADP--------LQLAIYRLAWAE 1143

Query: 914  SY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
             +  P  ++    +YV   +V              +
Sbjct: 1144 QHGLPLSAVTAAFVYVRSGEVVRPAGLPGRAGLERV 1179


>gi|308185340|ref|YP_003929473.1| putative recombination protein RecB [Helicobacter pylori SJM180]
 gi|308061260|gb|ADO03156.1| putative recombination protein RecB [Helicobacter pylori SJM180]
          Length = 953

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 129/875 (14%), Positives = 275/875 (31%), Gaps = 167/875 (19%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           + F    +  LT      + +  +++  + P L+ + ++ +++  +  +   T       
Sbjct: 238 DSFRGFLNSSLTWLEKKSEYLYFKKLKNEIPTLESECEEIENDLKRYYEAKET------- 290

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHIL 181
            A           Y+ A  K   LDF+ +    + LL   +   + +  +++D +I HIL
Sbjct: 291 -AIFKKFPKFIQLYDNATSKIQTLDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHIL 349

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDTSL  ++++    ++   G       R++F VGD KQSIY+F G+         
Sbjct: 350 IDEFQDTSLNDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS--------- 400

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                   +  + F    L  + RS   I+  V+ +F         +       +   ++
Sbjct: 401 --FSSLFESVSKDFYHDNLEFNHRSAPLIINYVNTIFKKAYQDSPTAYLEQKYPKTSQNK 458

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
               G V++                                 +L  ++     N++    
Sbjct: 459 HVTEGYVKVSLVA-------------------------DERELLLDQVLQEAQNLLDH-- 491

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    I  KDI +L    KD   I    +   +  + S   + +        I   
Sbjct: 492 --------RIDPKDITILCATNKDALEIKNYLQERLSAIRPSTESSAKLSQLVESKIIKN 543

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
                             +LK  L  +  DD   +     + E+V  ++ K         
Sbjct: 544 ALEYALAEEPYKPFYKHSVLK--LAGYLHDDAIALPGFNPKKESVASFVWK--------- 592

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                                    +        Q          D              
Sbjct: 593 ----------------------VMELFELYGEPAQICLELAVGCEDA------------- 617

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                    + +LE          S++    +IMT+H +KG++ P V + +      +  
Sbjct: 618 ------DGFLEKLEAKSI-----ASSHSKGAQIMTIHKSKGMQFPYVIVCE-RLGKPNSS 665

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           H  ++    +  +   +   +   +  +   +  +   + +   E   + YV  TRA   
Sbjct: 666 HSNQLLEEYNGTELARLYYRMKNREVVDKDYARALDKEEAAKDHEETNVYYVAFTRAELG 725

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           LI+       ++K+S + +  +    + H    +  ++                   P+ 
Sbjct: 726 LIVVAKDKKESKKESKKESKKESKNKTMHEKLDLAPLE----------EGEIMPVISPQK 775

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
            PL     IK                      P+       + + + +     +D +  N
Sbjct: 776 EPLIASVVIK----------------------PHAYGEQVQEIEEEPSDYEKNNDQEAIN 813

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            G+ +HK L+       +  K  +  Y   +   +   +Y+ L  S+     +  +    
Sbjct: 814 FGIALHKGLEY--QYAYNIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQALF 870

Query: 842 SCDSYS-EVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYT 899
              +   EV+         + ++   RID +   +   +++ +YK+  +          +
Sbjct: 871 KNLALRGEVAF------LFEGVV--SRIDVLLWDKGQNLYVLDYKSSQN-------YQQS 915

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
           H AQ+S Y   LK   P+  +   +IY +  ++  
Sbjct: 916 HKAQVSHYAVFLKTQAPHFKIQAGIIY-AHKRLLE 949


>gi|302521802|ref|ZP_07274144.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
 gi|302430697|gb|EFL02513.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
          Length = 1171

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 111/733 (15%), Positives = 203/733 (27%), Gaps = 119/733 (16%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCIEER-FSLLSSFFLTQKFTPQKNIITQEINKKSP 94
              +          A+ L++A        R FS L S  L+      ++++      +  
Sbjct: 131 GSRLLADASRFQLAARVLREAPGPYPALTRGFSDLVSDLLSLDGELSEHLVDPAALSRYD 190

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           +  + L+   +  +         +   + LA   L       Y  AK+   ++DF D + 
Sbjct: 191 E--DLLRTLAETRLSNDQLRKVPEAAAARLALTELTG----RYRAAKRSRDLIDFGDQLA 244

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            +  L ++      +   +  +   +L+DE QDTS+ Q  ++ +L            +  
Sbjct: 245 LSARLAREHPE---VGEALRAQYRVVLLDEYQDTSVAQRVLLSALFGG--------GTGH 293

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            + AVGD  Q+IY + GA    +    R         G       L  + RS        
Sbjct: 294 PVTAVGDPCQAIYGWRGASVANLDDFPRHFP---HPDGTPARRQSLSENRRS-------- 342

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
                      G    +         R    G   L        D         +     
Sbjct: 343 -----------GGRLLALANDLAAPLRALHDGVEALHAPAEKAAD--------GFVRCAL 383

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                     LA  IA+ +                     +I VL R   D   I     
Sbjct: 384 LPTHAEEIDWLADSIAHYVRT--------------GTSPGEIAVLCRTAGDFARIQAALV 429

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 +I V       L     I DL A+   +     + S V +L  P +     D+ 
Sbjct: 430 A----REIPVEVVGLSGLLHLPEIADLRAVCEVLQDPGANASLVRLLTGPRWRIGARDLA 485

Query: 455 KICTQRH---------------------------------------ETETVYEYIQKFAN 475
            +  +                                         E     E    F+ 
Sbjct: 486 LLGRRARLLAGGRSGEDDPDRKLATAVEGVDPAEIVSLADAVDTFVEGGPDAEDGLPFSA 545

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEF 532
              ++   + + + EL   A      D    +L       +  +          + L +F
Sbjct: 546 GARARLARLGRELRELR-RALADPLMDVLHRVLAVTGLDVELSASPNALAARRRETLGQF 604

Query: 533 LNFTLRNEQNSYS-SLQELISEL---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           L+          + SL   +  L   EQY   +  A     N V+++T H AKGLE  VV
Sbjct: 605 LDIAASFAATEPAASLLAFLGYLRTAEQYEKGLDNALPGGENTVKVLTAHKAKGLEWDVV 664

Query: 589 FLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            +    ++ F     ++       ++P         +      +   +       ++   
Sbjct: 665 AVPGLVAKQFPSDRGREKFTARASVLPHPLRGDAATLPDVPEWTAKGL-KAFQDGMRAHQ 723

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             E  RL YV  TR    L+   H     +K+    + +             +  +    
Sbjct: 724 ATEELRLGYVTFTRPRSLLLGSGHWWGPEQKRPRGPSAFLTALHDHCVRGHGEIERWAEP 783

Query: 704 INKDEWIAYEWST 716
               +       +
Sbjct: 784 PGPGDENPALRQS 796



 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/288 (10%), Positives = 67/288 (23%), Gaps = 26/288 (9%)

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
            +          +  D   D           ++       + +  E S         + + 
Sbjct: 875  DPYEGGPDAYESAPDAYEDGPDPYGDDAAPRVPAPAAHGDDLTPEESRLLDSWD-RDLDA 933

Query: 729  TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
               +L       +++  P      +   L                 +      RG   H 
Sbjct: 934  LEGELRRAAASVREVPLPPSLTATQVLRLAEDPDGLARDLARPLPQAPKPAARRGARFHA 993

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
             L+         R                  E +     I+  L+   +  A    +Y+ 
Sbjct: 994  WLER--------RLTAGHEQPHLPLADEGDTEARE-DAEISDDLDLEELKEAFERTAYAH 1044

Query: 849  VS---VSGKINCPKKDIIISGRIDQISISQQ----NIFIFEYKTHHHVPQEIEHIPYTHI 901
                 V           ++ GRID +  S +       I ++KT                
Sbjct: 1045 RPAHRVEVPFQLSLAGRVVRGRIDAVYASDEDGRRRYEIVDWKTGR-------DRTRADP 1097

Query: 902  AQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
             QL++Y     + +      +    ++V   +     +         +
Sbjct: 1098 LQLAVYRLAWAERHGIDPEEIAATFVFVRTGEAVRPGRLPGRAELERL 1145


>gi|162148662|ref|YP_001603123.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787239|emb|CAP56832.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5]
          Length = 699

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 112/750 (14%), Positives = 211/750 (28%), Gaps = 138/750 (18%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I + +       ++D   +       G   + + A+   +  A    
Sbjct: 80  RRASTEMTRRVERICRAVLGDKAGPLADALAWAGTFHSIGARLLREYAEQIGMDPAFSIH 139

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F+  +K    +        +  ++  S      +       K 
Sbjct: 140 DREDSADLMNLVRHDLGFSKTEKRFPAKGT---CLAIYSRVVNSGVPLGDVL-----LKH 191

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           +          K L A Y  AK+   VLD++DL++    ++ +  ++A I        +H
Sbjct: 192 YPWCAGWEAQLKQLFAAYVTAKQAQGVLDYDDLLLAWAQMVAEPVLAADI----GGRWDH 247

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           IL+DE QDT+ +Q +++                 R L  VGD+ QSIY+F  A  + +L 
Sbjct: 248 ILVDEYQDTNRLQADIL----------LGMKPDGRGLTVVGDDAQSIYAFRAATVRNILD 297

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                            I+ L  ++RST  IL   + V                      
Sbjct: 298 FPAAF-------DPPARIVTLDRNYRSTKPILDAANAVIGEAAERFTK------------ 338

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW +  S    +     +               +  A  IA  +      
Sbjct: 339 ---------DLWTERASDERPRLVTIADD--------------TAQADYIAGRVLEEREG 375

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T            K+  VL R    +  +            I  V        D   +K
Sbjct: 376 GTAL----------KEQAVLFRVSHHSATLEVEL----TRRNIPFVKFGGLKFLDSAHVK 421

Query: 420 DLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           D++ + RF  +  D ++   +L+  P    +            +         K      
Sbjct: 422 DVLTVLRFAQNPRDRIAGFRVLQLLPGVGPTSARRVLDTLGESDRPLEALAETKAPMRSG 481

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +Q  ++ +  L                       +  +          L +       
Sbjct: 482 EAWQGFMETVMALGGGKTGWPGEIAAVRAWYEPHLER--LHEDATMRQADLVQLEQIA-- 537

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
                Y S ++ ++EL   PP      +     + + + + T+H+AKG E   VF+++  
Sbjct: 538 ---GGYPSREKFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWKNVFVLNVV 594

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                    +   ++   EE  RLLYV 
Sbjct: 595 DGCIPSD----------------------------------LATGERDDIEEERRLLYVA 620

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA D L +                +Y              + +         + A  W
Sbjct: 621 MTRAKDALDLMVPQR-----------FYVHGQGMGDRHVYAARTRFVTREMLPLFHATAW 669

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLF 744
               PE    +      ++    ++     
Sbjct: 670 PIVAPEEQARQEAVKSVRIDMGARLRSLWS 699


>gi|328907790|gb|EGG27553.1| UvrD/REP helicase [Propionibacterium sp. P08]
          Length = 1093

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 116/953 (12%), Positives = 265/953 (27%), Gaps = 105/953 (11%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEERFSL 68
           +     P      + + + ++ + +E    T+   A+ +      +  +  +       L
Sbjct: 79  VLAQTRPSAQALRTALVRRLAGAHLEPQVMTVHALARRIVASPSRRLLTAPEQEFRMREL 138

Query: 69  LSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L++  ++      +    T +       +  +L++   +   + D   T+ + +      
Sbjct: 139 LAARDMSDWPDELRTCAGTAQFASDVRVMAARLRQEGCDPQDLTDAGVTWGVPE-----W 193

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +     A Y +       LD+ + +      L +      +R      I  ++ D+V +
Sbjct: 194 RVLGPFLADYLDVLDLEGTLDYAEAVHRARIALTRPGADIEVR----SRIKLLICDDVVE 249

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
               Q   +  +                     D  Q+IY F GA  +R+          
Sbjct: 250 CDSSQIRFLSQIARC----------HIPCVLTADPDQTIYGFRGAVAERLDEVIDEFP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG---- 303
                   S+  L  ++R++  I  VV+ + +        S+          +  G    
Sbjct: 298 ------DVSVHHLATNYRNSQHIAEVVESLRTRMPAVPSSSQLRRRANHSAVTEDGTVAA 351

Query: 304 --QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT----ISNMI 357
                  +L  ++             +W +            I+A  +A      + +  
Sbjct: 352 VRAPSMTRLVRKIAGTLRHAHVADGVAWRNMAVVTRHGGELGIIATVLAAEDIPVLRSRD 411

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                  N    ++ A  I V +   +        T        I      R      L 
Sbjct: 412 EHALSDINAVTHIVNALAIAVALASGRQPSDRDVATLLSNPLAGIDRSLVHRLETWCRLV 471

Query: 418 I---KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                D   LG         ++     + P    S  ++     +  +  +   +     
Sbjct: 472 RGIDIDWPLLGELGADPMAAVAAERGNERPEDG-SRAEVDGRAEEAGKEGSETAHEAYSV 530

Query: 475 NCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISR---FGNEVI 526
             G+      +  + + +  A        S H+    +           SR     +   
Sbjct: 531 PPGLRALAQPLAMMVQRVQRAADLLRSDASCHEALWALWQGSSWTSSLRSRALAGDSAAD 590

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTA 580
             LD   +     +     +       L      EQ P    R    + + V ++T H  
Sbjct: 591 RDLDGLCSLFDMADGAQTMAGIAGARRLIEVVRQEQIPADRARESDEDRDGVSVVTAHRV 650

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KG E  VV +       +   +     +         +      S               
Sbjct: 651 KGREFDVVAVCGLEEGNWPADNHTGSLVRADRWSPDSLVAAPGWS--------------- 695

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                   RLL V  +RA  QL++C   +    ++ S        V D   +       +
Sbjct: 696 -ENLRAETRLLLVACSRARRQLLLCTVESAEEGKRPSGLVAGLPHVEDHVDSLNFTSLTE 754

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQ-------LMDEQKIPKKLFSPIKNDIN 752
           L   + +      E      E   L  +  +++          +        +P + D+ 
Sbjct: 755 LVGELRRVVVDNSELPGVRAEAQALLDDLRVEKHRGRQLVPQADPSTWWCQGAPHQADVA 814

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKL-LQVIFTLPEHKRKN 803
               L+ S I           ++             + G ++H++  + +          
Sbjct: 815 GEIELSASHIGELLTCPRRWFMTRRAGASSGSAFQASIGSLVHRICAENMGHWSLPGALT 874

Query: 804 FITSY---CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
            +          A+     +  +   ++ R   +  + +       +EV V G I  P  
Sbjct: 875 ELEEAWPEIDVTAEWQRNAKLADAKAAVQRF--DGWLQSRHRQLIGTEVRVDGTIEVPSG 932

Query: 861 DIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
              + G ID++    +   ++ + KT      + E    +H  Q+ +Y+ ++ 
Sbjct: 933 TARVRGSIDRLERDAEGACYVVDLKTGA---SQSEETKRSHRLQIGVYQAVVA 982


>gi|294506408|ref|YP_003570466.1| ATP-dependent DNA helicase [Salinibacter ruber M8]
 gi|294342736|emb|CBH23514.1| ATP-dependent DNA helicase [Salinibacter ruber M8]
          Length = 712

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 99/617 (16%), Positives = 197/617 (31%), Gaps = 117/617 (18%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           +     K L   Y   KK++ ++DF+D        L+  +    +R+++     H+L+DE
Sbjct: 190 SLHAELKALRDAYRRYKKEHGLMDFDD---LLERTLELLETDDDVRHQVASRCRHVLVDE 246

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+ +Q E+++  +          S    +  VGD+ QSIY F GA+ + + R     
Sbjct: 247 YQDTNALQAELVKKFS----------SVHGNVTVVGDDAQSIYKFRGADFRNIFRFPDEF 296

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                       +++L  ++RST  +L + ++V    E +   +                
Sbjct: 297 D--------DTEVVKLEHNYRSTQPVLDLANRVIEQAERSYDKTLF-------------- 334

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                           +   +  +     D   +       AR +A  +  +        
Sbjct: 335 --------------TEKTEGELPALVPAADGDME-------ARFVAEMVLRLREDG---- 369

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 +   D+ VL R   +   +        N   I  V      L +   IKD++A 
Sbjct: 370 ------VPLSDVAVLFRSSHNAYDLEVEL----NQRNIPFVKYGGMKLNEAAHIKDVLAH 419

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANCGISKF 481
            + + + +D  S+   L+  +          + +  T+  E          F++   ++ 
Sbjct: 420 LKVVENPQDAASWNRALQ-LIHGIGPKTAQSLIEWTTEAAEDPLTLGDGAPFSDRYAARL 478

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNE 540
           + +   +  +   +   S  +    IL   +   +   +    +    L+        +E
Sbjct: 479 KQLFSTLRHVR--SDDTSVTEQVEAILDYYQPLFENKYADDHPKRAPDLEHLAGLAANHE 536

Query: 541 --QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             Q   SSL     EL                 + + T+H+AKGLE   VFL+       
Sbjct: 537 SRQRFLSSLTLDPIELTALDQETGEDDEPP---LVLSTIHSAKGLEFHTVFLIRALDGTI 593

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +H  +                                       +E  RL YV +TRA
Sbjct: 594 PSRHALREPGG----------------------------------VDEELRLFYVAVTRA 619

Query: 659 SDQLIICKHSNT-SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            + L I          +     T    V D   +     ++   ++++++   A E    
Sbjct: 620 EEDLFISYPMTQYRRGQGEYMTTPSRFVEDLPDDVLEPVQLVEEDAVDENAPDAPEEGDT 679

Query: 718 HPENTPLEREETIKQLM 734
            P +   E     +   
Sbjct: 680 LPSSRNGEAPAPPESTR 696


>gi|307320004|ref|ZP_07599426.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
 gi|306894381|gb|EFN25145.1| UvrD/REP helicase [Sinorhizobium meliloti AK83]
          Length = 689

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 110/739 (14%), Positives = 211/739 (28%), Gaps = 129/739 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    ++   E I   +       ++D   +       G   +   A+   L       
Sbjct: 71  RRAAAEMSRRVERICAQVLGRSSGMMTDALSWAGTFHGIGARLLRIYAEQIGLNAEFTIH 130

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F+  +    T+        +  +   ++    ++   +  +  
Sbjct: 131 DREDSADLINLIRHELGFSKTESRFPTKGT---CLAIYSRTVNAEMRLNEVLRTWYPW-- 185

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                      + L A Y EAK+   VLD++DL++    ++    ++  I        ++
Sbjct: 186 ---VAGWEQQLQELFAGYVEAKQAQNVLDYDDLLLYWAQMVSDASLADDI----GNRFDY 238

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  V+ +L              R L  VGD+ QSIYSF  A  + +L 
Sbjct: 239 VLVDEYQDTNKLQSSVLLAL----------KPDGRGLTVVGDDAQSIYSFRAATVRNILD 288

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +              I+ L  ++RST  IL   + V  +       +  +      R 
Sbjct: 289 FPKQFA-------PAAEIVTLDRNYRSTQPILAAANGVIDLARERFTKNLWTDRESAERP 341

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                               L      +  A  I   +     +
Sbjct: 342 -----------------------------------KLLTVKDEADQANCIVEQVLANRES 366

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             +           K   VL R    +  +            I  V        D   +K
Sbjct: 367 GMLL----------KQQAVLFRTSSHSGPLEVEL----TRRNIPFVKFGGLKFLDSAHVK 412

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCG 477
           D++A+ RF  +  D ++   +L+  L         KI           +           
Sbjct: 413 DMLAVLRFAQNPRDRVAGFRLLQ-MLPGVGPQTAGKILDTIAADPEPLMALGEVPAPPRS 471

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            + +  +++ +  L               +       +  I          L +      
Sbjct: 472 GTDWMSLVELLQALRKPGSAWPTEIEMARMWYEPHLER--IHEDAETRRADLVQLEQIAA 529

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593
                   S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++ 
Sbjct: 530 GY-----PSRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWRSVFMLNV 584

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                                                     +        EE  RLLYV
Sbjct: 585 VDGCIPSD----------------------------------LATGTSHELEEERRLLYV 610

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           GMTRA DQL++          +  Q   +     +      + +   + +         E
Sbjct: 611 GMTRAKDQLMLMVPQRFFTGGQHAQGDRHVYASRTRFIPATLLQFFESANWPVASPNVSE 670

Query: 714 WSTHHPENTPLEREETIKQ 732
            S          R  T+ +
Sbjct: 671 RSAKQIRIDVAARMRTMWR 689


>gi|308234385|ref|ZP_07665122.1| UvrD/REP helicase [Atopobium vaginae DSM 15829]
          Length = 1248

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 107/644 (16%), Positives = 209/644 (32%), Gaps = 109/644 (16%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            + T+          ++LK  +++F    D      + ++    + +A++++  Y + K+
Sbjct: 290 ELRTKLPTSVGKAHAQELKTLKEDFACAHDSVRFLVLNRAFDLCVDIARHVDERYMQLKR 349

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  +LD +DLI  T  ++K     ++I  ++      +++DE QDT   Q E+I  L+  
Sbjct: 350 ECSMLDNDDLIHETLRVIKHN---SYIAAQLTNRFKLVMVDEFQDTDTAQLELISLLSGK 406

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    +   L  VGD +QSIY+F GA+           +KR            L +
Sbjct: 407 ---------NAEHLTTVGDAQQSIYAFRGADVSV-------FRKREATCPCALK---LCV 447

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS  DIL+ VDKV      +          +    +        +  +      +   
Sbjct: 448 NYRSHKDILSFVDKVCDAGTPSNPKQGLVQHFMHLDDNPTRDAHAYKAHDLPRLDVEMVK 507

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
            P +    +            +LA  +A  +   +              +  D+ +LVR 
Sbjct: 508 APFKRDVCA----------RKVLAAALAQRMYAYVKHGQ----------KPSDMALLVRS 547

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF-VCML 441
             +  +     R       ++ V +     T    ++ +  L   + +  D  +    +L
Sbjct: 548 ATNVDVYLDAIRA----RGLNCVVSGGSTFTSAPEVQVMAQLLHVLANPCDTQNGLFGLL 603

Query: 442 KSPLFNFSEDDIF----------KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            SPLF   E D+            +  +R     +             + Q     +   
Sbjct: 604 ISPLFALDEQDLLLLASMNQPTSDLPAKRPIDRGLEHMTFYKDMPCSLRLQRAHDILMRA 663

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--EVIDVLDEFL----NFTLRNEQNSYS 545
            +   + S  D    ++       +          V   +   L      T         
Sbjct: 664 RNELPYKSVADVCLDVVKQSGWLLRLEKAGTTTIPVRANIMAALRYIDELTKDLGLGPAR 723

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH--- 602
           + QE    L +           + + +++MTVH +KGLE P+VFL +  ++V +      
Sbjct: 724 AAQEFDIWLSRSKIAPASLAGDDQDSIQVMTVHASKGLEFPLVFLSEWYTEVPAAPRVMC 783

Query: 603 ------------------------------------------IKKMHIMPSLNDDPGIPI 620
                                                          +MP    D G+  
Sbjct: 784 VSVPKSSTKQPASTTKQPTHADAHSSSLDAQETAAKVACMLVPPSSDLMPHQKFDEGVVE 843

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                   +       +      +EE  R+LYVG+TRA + LI+
Sbjct: 844 EHAPVCY-SEWFEYGKRLASLRDREESARILYVGLTRAREALIV 886



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 11/159 (6%)

Query: 775  SDNQTFNRGLIIHKLLQVIFTLPEHKRKNF-ITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
               +    G   H+L Q +         +  I   C        A + K L  ++ R   
Sbjct: 1071 DTTRATALGSAFHQLAQSMVESQNLFPSDEHIARMCA--YWKLSAAKEKRLRDALWRWWN 1128

Query: 834  NPMMTTAMSCDS-YSEVSVSGKINCPKKDIIISGRIDQISISQ--QNIFIFEYKTHHHVP 890
            + +    ++ D+  +EV    + +         G  D ++ S   ++  + +YKT     
Sbjct: 1129 SNIRREVLTYDTIRAEVPFCIQRDSAYGRYY-HGAFDLLATSASSRHALLIDYKTGDL-G 1186

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYPNKS-LVCLLIYVS 928
               E I   H  Q  +Y  +L   +   + + C  + V 
Sbjct: 1187 LSKEEIAARHALQSQLYADVL--LHAGYTSVTCAFVCVE 1223


>gi|108563927|ref|YP_628243.1| putative recombination protein RecB [Helicobacter pylori HPAG1]
 gi|107837700|gb|ABF85569.1| ATP-dependent nuclease [Helicobacter pylori HPAG1]
          Length = 953

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 129/865 (14%), Positives = 267/865 (30%), Gaps = 163/865 (18%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T    +  +   +    LK ++   + E  +I +    Y   K T         
Sbjct: 245 FLNSSLTW---LEKKSEYQSFKKLKSEIPTLESECEEIENDLKRYYEAKETAIFKKF-PK 300

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 301 FIQLYDKATSKIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSL 360

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY+F G+                 +
Sbjct: 361 NDYKILAPFIDEIKAGIGQAKWQRSVFFVGDVKQSIYAFRGS-----------FSSLFES 409

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS   I+  V+ +F         +       +  +++    G V++
Sbjct: 410 VSKDFYHDNLQFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKASNNKHVTEGYVKV 469

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 470 SLVA-------------------------DERELLLEQILQEAQNLLDHH---------- 494

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L     D   +    +   ++   S   + +        I            
Sbjct: 495 IDPKDITILCATNDDALEVKNYLQEYLSEICPSTESSAKLSQFVESKIIKNALKYALAEE 554

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   + +   + E+                         
Sbjct: 555 PYKPFYKHSVLK--LAGYLHDDAIALPSFNPKKES------------------------- 587

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       F   I+   K   +                L   +  E  +       
Sbjct: 588 ---------VAGFVWKIMEQFKLYGEPAQSC-----------LELAVGCEDAN-----GF 622

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + +LE            N    +IMT+H +KG++ P V + +      +  H  ++    
Sbjct: 623 LEKLEAKSIASF-----NLKGAQIMTIHKSKGMQFPYVIVCE-RLGKPNSSHANQLLEEY 676

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           +  +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 677 NGAELLRLYYRMKNREVVDKDYARALNKEEAAKDHEETNVYYVAFTRAELGLIVVAKDKD 736

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             + K   +                          K +    E  T  P  +P +     
Sbjct: 737 QKKDKKESKKESKNKGMR----------------EKLDLFPLEEGTIAPVISPQKEPLIA 780

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
             L+      +++                   + + + +     +D +  N G+ +HK L
Sbjct: 781 SVLIKPHAYGEQVQ------------------EIEEEPSDYEKNNDQEAINFGIALHKGL 822

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
           +       +  K  +  Y   +   +   +Y+ L  S+     +  +           + 
Sbjct: 823 EY--QYAYNIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAEIQALFKN-----LP 874

Query: 851 VSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
           + G+     + ++   RID +   +   +++ +YK+  +          +H AQ+S Y +
Sbjct: 875 LKGEAAFLFEGVV--SRIDVLLWDRGQNLYVLDYKSSQN-------YQQSHKAQVSHYAE 925

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFI 934
            LK   P+  +   +IY +  ++  
Sbjct: 926 FLKTQAPHFKIQAGIIY-AHKRLLE 949


>gi|113954302|ref|YP_730266.1| exodeoxyribonuclease V subunit beta [Synechococcus sp. CC9311]
 gi|113881653|gb|ABI46611.1| exodeoxyribonuclease V, beta subunit [Synechococcus sp. CC9311]
          Length = 1212

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 102/887 (11%), Positives = 225/887 (25%), Gaps = 154/887 (17%)

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
             ++          +         +        + +  V+ F  L+ +  D          
Sbjct: 339  TLQKAIAALWDGPAEKVWRHALTHGLQTLAARRAQQGVISFSGLL-DALDPQATDAEPKR 397

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                I +     LIDE QDT  +QW ++++            +    L  VGD KQ+IY 
Sbjct: 398  WLVPIQRRYRVALIDEFQDTDPLQWRLLQACFA---------TPNHLLLMVGDPKQAIYR 448

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F G +     + ++          Q   I  L  + R+T  ++  +++  +       L 
Sbjct: 449  FRGGDLNTYKQARQ----------QADQIDNLLDNRRTTPSLMEAMNQWMAPGLKRSKLE 498

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                T            G   L    +   DS   P + +                    
Sbjct: 499  VPRVTPCATALPLELPDGEQPLQLIDLQADDSDSPPTRTALE------------------ 540

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
               TI  ++    +        +   D+ VLV + +         R       +      
Sbjct: 541  --STIPPLVACQALHLLDSDPSLTPSDLCVLVSRHRQA----EAVREQLAQRGLPSRLVS 594

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
               +       +L  L   + +  D      +  S L  ++   +          +    
Sbjct: 595  PGDVLSTTGAAELQHLLDALTTPADGGRLRRLACSALMQWTSHQLQD---AETNGDLDRL 651

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
              Q         F  ++  + +L+              +L     R + +          
Sbjct: 652  AGQLRNLQDDLPFLGLLGCLSQLLE-----------GRMLADLSSRGRLLGDIQQCAR-- 698

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGL 583
                +   +  +     S  + +      P                + V ++TVH +KGL
Sbjct: 699  ---LVQDAMHRQGLDLGSAADWLRRQRLQPIEPTPDNRQPHSDLAESAVAVVTVHRSKGL 755

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            + PVV            K     +          + +                +  +  +
Sbjct: 756  QYPVVICPYLWQAPADGKGPLWRNPPNDPEGTWQVALNPHWGHGH-----KAAERNQDDS 810

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
              E  RL YV +TRA   L++   +    +         ++           + +    +
Sbjct: 811  AAEAERLAYVALTRAERHLVVFWVAAAGQDANPLANWVKEL--SMRDKPLASRHLPPETT 868

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-TI 762
                   A    T    + P    +                   K    +P  L     I
Sbjct: 869  TLPFWRPAPRIETLQLSDVPQRTLDRSWGRSSYSAWISTQNGHHKPAPADPRNLEEGRDI 928

Query: 763  DTKGKTNLES-----------LLSDNQTFNRGLIIHKLLQVIFTL-PEHKRKNFITSYCT 810
            D    T               L    +    G  +H++L+ +    P  +  N       
Sbjct: 929  DAVADTEAPESPANTADQNGPLADFPKGPGAGDCLHRILEQVSFQGPADQAPNQAVVAEE 988

Query: 811  KNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEVSVSGKINCPKKDI 862
                    +    ++ ++  +L+ P         ++   +     E+S    +    K +
Sbjct: 989  IGRAGIDLEYCDAVITALNTVLKAPLGGPLKDLKLSDLSAGRRLHELSFDLPVAQRGKPV 1048

Query: 863  ----------------------------------IISGRIDQISISQQ-----NIFIFEY 883
                                               ++G ID +    +       ++ ++
Sbjct: 1049 NSAGLAHAFEADSDHRFGQHYAQSLRQLDIRSRGFLTGSIDLVFTDGENPATARWWVADW 1108

Query: 884  KTHHHVPQE-------------------IEHIPYTHIAQLSIYEKIL 911
            K++    ++                    + + + +  Q  +Y   L
Sbjct: 1109 KSNWIGERDDSGRGVACGPRHYSQAAMEEQMLSHHYPLQAHLYLLAL 1155


>gi|148654248|ref|YP_001274453.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
 gi|148566358|gb|ABQ88503.1| UvrD/REP helicase [Roseiflexus sp. RS-1]
          Length = 1177

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 138/994 (13%), Positives = 282/994 (28%), Gaps = 150/994 (15%)

Query: 8    SLNESYELIYKDLWPLPYFQVSD----------INKYVSLSMETGNPTILKKAQTLQQAS 57
            +  E  E I   L                    +N         G P  ++   T     
Sbjct: 253  AAEEMRERIIAALRQAAPRLAGRVEISTFHSWGLNILRIYGARLGLPADVRLLDTADLFL 312

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIIT--------QEINKKSPDLKEKLKKSQDEFIK 109
                  +R   L   +      P ++++T        ++      +     ++  +  I 
Sbjct: 313  LLS---KRLDDLRLAYFKDLREPTRHLVTIIQAISRIKDELWSPEEFARAAEQEAERLIG 369

Query: 110  IRDRFNTYKMFKSTLA---------SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
              ++ +     K+T A         +L     +   YE   ++   LD+ DLI+     L
Sbjct: 370  QAEQDHPGASRKATEARERAVRRATALRELAQIYPRYEAILREAGALDYGDLIVLPVRAL 429

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
                ++A     + +  +++L+DE QD +    E+IR L                ++AVG
Sbjct: 430  HDPAIAAD----LRRRYHYLLVDEFQDINYASGELIRLL----------DGGRGRVWAVG 475

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D  QSIY F GA    +                   +  L  ++RS   IL     V   
Sbjct: 476  DAWQSIYRFRGASAANLDEFLHHYPT--------AQVRYLTRNYRSLQPILDASAAVMVS 527

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
               A      +T  +       G    ++L         +                    
Sbjct: 528  DPRA------ATRPLLQAQRTGGGHAVIELVAPHSQDEHTAIAHDILRRARSGRGRGLPR 581

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
             A          +   +    +F     R  +  D  VL R  +    I  +       +
Sbjct: 582  CAVQPWMLHCRKMRRALRRPPLF----IRRWRFHDHAVLCRTHEQASAIAAVLEA----H 633

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             I V       + +   +KD++A+   I S  +    +  L  P      +D+  + +  
Sbjct: 634  GIPVDHPG--NVFEASEVKDVLAICAQIGS-TNSAGLLRALTMPDHRLDPNDLNLLVSLA 690

Query: 461  HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
             +T+       +         +   + +  L  I +           L      Q    R
Sbjct: 691  RQTQQALPRAARDPAVLAQLSETARQTLTRLQTIVETLEREADVWHALTTYLFEQSQAMR 750

Query: 521  FGNEVIDV-----------LDEFLNFTLRN------EQNSYSSLQELISELEQYPPTIKR 563
                               L + +            E++        I  L       + 
Sbjct: 751  QRLNRAARGEYAAQRELATLGQLIAIARNFVRLATPEESGAPHFIAYIRALRAAGVQPRP 810

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  + VR+MTVH AKGLE P+V++       F  +  ++   +P+      I     
Sbjct: 811  LIGGQADAVRVMTVHAAKGLEFPIVYVPGLQEGRFPARGNQRGLSLPAGLIRGSI----- 865

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                             +   +E   LLYV MTRA D+L++ +     N +++ +R+   
Sbjct: 866  -----------------EPEDQEERYLLYVAMTRARDRLVLSRALTRGNGERAAERS--S 906

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
            ++      +     ++           A     H   +TP  R       +D     ++ 
Sbjct: 907  LLPGDGDGNGAPWIVRSVIGGATCPNPAPAMRLH---DTPAPRMPLPASSIDLDGCKRRF 963

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                   +                 +L   L  +Q       +  L +           +
Sbjct: 964  LYQYVYQLY---------------DDLSPFLRMHQAIR--ECVRTLTEQARAGVLPADDD 1006

Query: 804  FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEVSVSGKINCPKKDI 862
             + S      + +            T  L++  +    +     +   V  ++   +   
Sbjct: 1007 AVRSLVFGQLQRYELDTVLYAEDYATETLQHVQVVWNDLRSGRIAPERVDRRVLVRRPAG 1066

Query: 863  IISGRIDQISISQQN----IFIFEYKTHHH-VPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
            +I  RID+   +Q      +++          P+  +H+       + +Y    +    +
Sbjct: 1067 VIEVRIDR-EETQDGVTRWVWV------RPGAPRGNDHLSER----MILYALA-RQEVGH 1114

Query: 918  KSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                  + +    +   +      +  A  + KI
Sbjct: 1115 PPDELAIAFTGTGETVRVTHA--ERVLANHTAKI 1146


>gi|68465639|ref|XP_723181.1| potential DNA repair helicase [Candida albicans SC5314]
 gi|68465932|ref|XP_723034.1| potential DNA repair helicase [Candida albicans SC5314]
 gi|46445047|gb|EAL04318.1| potential DNA repair helicase [Candida albicans SC5314]
 gi|46445203|gb|EAL04473.1| potential DNA repair helicase [Candida albicans SC5314]
          Length = 862

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 87/596 (14%), Positives = 164/596 (27%), Gaps = 146/596 (24%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
              +    Y+        LDF+D ++  + L++   V  +        I H+L+DE QDT
Sbjct: 201 ALAFFYEKYQALLTDLKKLDFDDCLLECHRLVENFPVLNY--------IKHVLVDEFQDT 252

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ  ++    +    G         +  VGD  Q IY+F  A+     +      K  
Sbjct: 253 NEIQLRLMYHFAKGNTNGD--PKYQNNVTIVGDPDQGIYAFRDAQSINFEKMSTYYTKL- 309

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I L  ++RST+ IL + + + +  +        S      +          
Sbjct: 310 ---NLSLDKISLNENYRSTSSILNISESLMNQQKGRMPKMLKSQLDSSIKPVYSCLNSAK 366

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +                                    A+ I Y IS+++           
Sbjct: 367 E-----------------------------------EAKWIVYQISHLLS-------LPN 384

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             +Q KDI VL R    +  +            +S          D   +  +M   +  
Sbjct: 385 SAVQEKDIAVLFRAAYQSRALEDEL----VKRGLSYKMIRGKAFWDRQEVIAIMDYMKVC 440

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ----------------- 471
             + +  + +  L  P        +  I     +     + +                  
Sbjct: 441 SDEYEQAAVIRTLNYPKRGIGSKTLENIEKIIEKRVKQGKSVHQCLLAMTKKSEEPEIKL 500

Query: 472 --------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                   +     I+K +  +  +  L       +  + F LI  + K +Q+F +    
Sbjct: 501 TKKQIQGVEEYYTMITKVKKKLYEMEALSGEDMTNTAKELFDLIYESSKLKQEFENDEER 560

Query: 524 EVIDVLDEFLNFTLRN------------------------------EQNSYSSLQELISE 553
                ++E  N  ++                               +      L E   E
Sbjct: 561 SKRLNVEEVGNLLVQFKPKDEILPDYIGGDIEDDDAVDEGDRNFLAQFIESVGLYETNDE 620

Query: 554 LEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           +E+         +     + + + T+H +KGLE PVVF+      +       +      
Sbjct: 621 VEKNGSESTGDDTAKEEKSCISLSTIHGSKGLEWPVVFVQGLTDGLLPAGFSFRNSFGD- 679

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                             E  R  YV +TRA   L I  +
Sbjct: 680 ----------------------------NDENLNEERRCFYVAVTRAKVLLYISSY 707


>gi|313894811|ref|ZP_07828371.1| UvrD/REP helicase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976492|gb|EFR41947.1| UvrD/REP helicase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 643

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 96/584 (16%), Positives = 169/584 (28%), Gaps = 133/584 (22%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            + +               Y+   K+   LDF DLI      +++ D    +R  +++  
Sbjct: 161 AISQEKEELRRCIASYYEIYQRMLKEVNALDFGDLINFAIKAMEEYDD---VREAVNRRF 217

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            ++  DE QD+S     +I  L              R +  VGD+ QS+YSF GA+ K+ 
Sbjct: 218 RYVTADECQDSSSSDLRLIELLC----------PGMRGMCMVGDDSQSMYSFRGADLKKF 267

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
               +           +     L  ++RST +I+   + V    E++   +         
Sbjct: 268 FHFIQ---------KARLKKFYLEQNYRSTRNIVEGANCVIRNNEHSLEKNMF------- 311

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                                       +       D   Q           A  I+NM+
Sbjct: 312 ---------------------TENTAGTKILSLGASDEYEQ-----------ANQIANMV 339

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
            +        ++ I  +DI VL R       I +     K    I    +          
Sbjct: 340 RS------FGEKGIALRDIAVLYRSGFLAESIEYGLLKEK----IPYRIHSNTPFCARKE 389

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV----------- 466
           +KD++A  R I S  D  +   +LK     F   DI  +      ++             
Sbjct: 390 VKDILACLRLIHSSGDFAALERVLKLLGGGFRAKDIPDVAVIDIWSDPALTLEKIVVTLR 449

Query: 467 -YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-- 523
            YE  Q      I      +  + EL       S       I+                 
Sbjct: 450 RYEREQTRGRMYIGAVYRFLLQLAELRDA--HISVQSMIQRIIDILDYHAIIERSLRKGE 507

Query: 524 ---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                 + ++  L+     +         L   +          +    + V +MT+H +
Sbjct: 508 SIVPHFENINTMLSVAKEYDS--------LDEFIVSVMAAEDAGNDERFDGVNLMTIHAS 559

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE  +V +      +F                                      K ++
Sbjct: 560 KGLEFRIVIVAGCSEGLFPTN-----------------------------------KAIQ 584

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
               EE  R+ YV MTRA + L +    + +     +QR +   
Sbjct: 585 SGNIEEERRIFYVAMTRAKEYLGLIYLKSITKSVGDSQRYFCSR 628


>gi|253584027|ref|ZP_04861225.1| ATP-dependent nuclease subunit A [Fusobacterium varium ATCC 27725]
 gi|251834599|gb|EES63162.1| ATP-dependent nuclease subunit A [Fusobacterium varium ATCC 27725]
          Length = 1036

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 141/864 (16%), Positives = 272/864 (31%), Gaps = 156/864 (18%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTY----KMFKSTLASLTLAKYLNAHYEEAKKK 143
            ++  K  D+  +L+  +  + +++D          +       L +   +   Y++ K K
Sbjct: 281  KVKSKKGDIDSELEDMKYIYGELKDNLAKTMYNNSIIPYEEKLLYILNRIYEVYDDIKFK 340

Query: 144  NCVLDFEDLIINTNDLLKK--------RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
                   D+   T   ++           V+      +D +I+ I IDE QDTS++QW++
Sbjct: 341  EKKFTHSDISSYTFKYIRDKELNFINENGVTDEFFEILDGKIDTIFIDEFQDTSILQWKI 400

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            ++ + +              +  VGDEKQSIY + G E K     ++I            
Sbjct: 401  LKDIIDQ----------TNNVICVGDEKQSIYGWRGGEKKLFENLEKII---------DG 441

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               +L   FRS  +I++  + +FS         E                         V
Sbjct: 442  KEEKLFTCFRSEKNIVSFTNMIFSNISKMSDKEEFGEEPWNF---------------YEV 486

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
            +      +   E      D          +  +I   I                    K 
Sbjct: 487  NSKSEDVSGHIEILRKKSD------DEITVINQIIKKIKEDFNN------------NYKG 528

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I +L R  K+  +I            I  V +    + D+  I  L +L  +++ + D L
Sbjct: 529  IGILGRTNKELDMIAEKLSE----ADIPYVIDSNSNIVDYRGINGLFSLINYLV-KNDYL 583

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
            S +   +S L N     +  +   R + E               +   V++ + ++    
Sbjct: 584  SLLDFFRSDLINIRVKALKYMIKNREDIEKYLNMEDIEILLDGIEL-EVLEIVRDIRKEY 642

Query: 496  QFCSPHD--FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
               +         IL       +F        I  +  F               +E I E
Sbjct: 643  MENNGETNFLTYDILKKVGIGGRF---NSKSDISNIYSFYKIIKNY-----KYFEEFIVE 694

Query: 554  LE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF-LVDTGSQVFSHKHIKKMHIMP 610
             E  +     K+    + N V IMT+H +KGLE   +F   +  S+  S  +++    M 
Sbjct: 695  FEDKKNSDKFKKMVLEDDNSVNIMTIHKSKGLEFDTLFYYYNPSSRGNSRGNMRFFLKMD 754

Query: 611  SLNDDPGIPIWIPQSKSR----NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
               ++P   +       +         D +  ++   + E    LYV +TR  + L I  
Sbjct: 755  KEYNEPESFLITHDKFKKIIKSLGKEYDYLNDIEIKEKHEEINNLYVALTRPKNNLYIA- 813

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                    K N  +    + ++   +  +   K    I + +   +      PE    + 
Sbjct: 814  ----VENDKENLFSEALFLSENIIEESNIVFSKNDVKIAEGKKREFAVDLSTPEADYPDA 869

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
            EE++++  ++                                     L++     RG  +
Sbjct: 870  EESMEKEREKIYSHA--------------------------------LANEMKRVRGTTV 897

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSCD 844
            H  L+ I    E +         ++ A +   K  K LL   +I  +L         S  
Sbjct: 898  HFFLENILHGSEEEIALAKELTFSRFASVIREKVIKELLSDENIEYILN--KNRKIFSD- 954

Query: 845  SYSEVSV---SGKINCPKKDIIISGRIDQIS------ISQQNIFIFEYKTHHHVPQEIEH 895
               E        ++   +K      RID++        S+  I+I +YKT     +  E 
Sbjct: 955  ---EWDFIFPEYEVFTEEKTY----RIDRLMVKMPVDESKGIIYIVDYKTG----ETDEE 1003

Query: 896  IPYTHIAQLSIYEKILKDSYPNKS 919
                   Q+  Y  +++     + 
Sbjct: 1004 -------QIENYRHLIEKLLEERK 1020


>gi|254780085|ref|YP_003058192.1| putative recombination protein RecB [Helicobacter pylori B38]
 gi|254001998|emb|CAX30257.1| ATP-dependent DNA helicase [Helicobacter pylori B38]
          Length = 945

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 132/866 (15%), Positives = 271/866 (31%), Gaps = 171/866 (19%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T    +  +   +    LK ++   + E  +I +    Y   K T         
Sbjct: 243 FLNSSLTW---LEKKSEYQSFKKLKSEIPTLESECEEIENDLKRYYEAKETAIFKKF-PK 298

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y+ A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 299 FIQLYDNATSKIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSL 358

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY+F G+                 +
Sbjct: 359 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS-----------FSSLFES 407

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS   I+  V+ +F         +       +  S++    G V++
Sbjct: 408 VSKDFYHDNLQFNHRSAPLIINYVNTIFKKAYQNFPTAYLEQKYPKASSNKHATDGYVKV 467

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  +I     N++             
Sbjct: 468 SLVA-------------------------DERELLLEQILQEAQNLLEH----------R 492

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  KDI +L    KD   I    +   +D + S   +          I  +    R+ L+
Sbjct: 493 IDPKDITILCATNKDALEIKNYLQEYLSDIRPSTESSTNLSQFVESKI--IKNALRYALA 550

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
           +E    F       L  +  DD   + +   + E+                         
Sbjct: 551 EEPYKPFYKHSVLKLAGYLHDDAIVLPSFNPKKES------------------------- 585

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       F   ++   +   +                L   +  E          
Sbjct: 586 ---------VAGFVWKVMELFELYGEPAQSC-----------LELAVGCEDAD-----GF 620

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + +LE            N    +IMT+H +KG++ P V + +      +  H  ++    
Sbjct: 621 LEKLEAKKIASF-----NAKGAQIMTIHKSKGMQFPYVIVCE-RLGNPNSSHSNQLLEEY 674

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           +  +   +   +   +  +   +  ++  +++   E   + YV  TRA   LI+      
Sbjct: 675 NGAELVCLYYRMKNREVVDKDYARALEKEEEAKDHEETNVYYVAFTRAELGLIVVAKDKK 734

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            ++K+S  +T  + +                  + + E          P  T +  +   
Sbjct: 735 ESKKESKNKTMREQL--------------DLTPLEEGEIAPVVSHRKEPLITSVVIKPHA 780

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                                           + + + +     +D +  N G+ +HK L
Sbjct: 781 YGEQ--------------------------VQEIEEEPSDYEKNNDQEAINFGIALHKGL 814

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EV 849
           +       +  K  +  Y   +   +   +++ L  S+     +  +       +   EV
Sbjct: 815 EY--QYAYNIPKKSVLEYLNYHHGFYGL-DHQALEESLELFENDTEIQALFKNYALKGEV 871

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           +         + ++   RID +   +   + + +YK+  +          +H AQ+S Y 
Sbjct: 872 AF------LFEGVV--SRIDVLLWDKGQNLCVLDYKSSQN-------YQQSHKAQVSHYA 916

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFI 934
             LK   P+  +   +IY +  ++  
Sbjct: 917 AFLKTQAPHFKIQAGIIY-AHKRLLE 941


>gi|227819648|ref|YP_002823619.1| DNA helicase [Sinorhizobium fredii NGR234]
 gi|227338647|gb|ACP22866.1| UvrD2 DNA helicase [Sinorhizobium fredii NGR234]
          Length = 688

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 105/684 (15%), Positives = 196/684 (28%), Gaps = 145/684 (21%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--QQASQTQ 60
            R    +    E I   +        SD   +       G   + + A  +    +    
Sbjct: 69  RRAAAEMGRRVERICSQVLGAKAGSFSDALAWAGTFHGIGARLLREHATEIGIDPSFTIH 128

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQE--------INKKSPDLKEKLKKSQDEFIKIR 111
             E+   L++       F+  +    T+                L E L+ S        
Sbjct: 129 DREDSADLMNIVRHELGFSKTESRFPTKATCLATYSRAVNAEQPLDEVLRDSFPWCSAWE 188

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            +                   L   Y +AK+   VLD++DL++    ++      A +  
Sbjct: 189 KQLR----------------ELFGAYVDAKQAQNVLDYDDLLLYWAQMMGD----AVLAE 228

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +     +H+L+DE QDT+ +Q  ++ ++  +           R L  VGD+ QSIYSF  
Sbjct: 229 EAGGRFDHVLVDEYQDTNRLQASILLAMKPE----------GRGLTVVGDDAQSIYSFRA 278

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L                  +I L  ++RST  IL   + V  +       +   
Sbjct: 279 ATVRNILDFPATF-------TPAAEVITLDRNYRSTQPILAAANGVIELARERFTKN--- 328

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                             LW +  S    +    ++               S+ A  +  
Sbjct: 329 ------------------LWTERESAERPRLVTVRD--------------ESVQANYVVE 356

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +        +               VL R    +  +            I  V      
Sbjct: 357 QVLQNREGGMLLKQQ----------AVLFRTSHHSGSLEVEL----TRRNIPFVKFGGLK 402

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
             D   +KD++A  RF  +  D ++   +++  L         +I             + 
Sbjct: 403 FLDSAHVKDMLAALRFAQNPRDRVAGFRLMQ-LLPGVGPQTAGRILDAIAADPEPLTTLS 461

Query: 472 KFANCGI--SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
           +        + +   +  +  L             + I  A+   +  + R   +     
Sbjct: 462 EIPAPPRSGNDWTSFVDMLEALRPGRAGWP-----SEIGTARNWYEPHLERIHEDAEMRK 516

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLES 585
            + L          Y S +  ++EL   PP      +     + + + + T+H+AKG E 
Sbjct: 517 ADLLQL--EQIATGYPSRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEW 574

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+++                                                 +  E
Sbjct: 575 KSVFVLNCVDGCIPSDLGVGST----------------------------------AEIE 600

Query: 646 EYNRLLYVGMTRASDQLIICKHSN 669
           E  RLLYV MTRA D L +     
Sbjct: 601 EERRLLYVAMTRARDSLHLITPQR 624


>gi|327192364|gb|EGE59327.1| ATP-dependent DNA helicase protein [Rhizobium etli CNPAF512]
          Length = 686

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 106/673 (15%), Positives = 198/673 (29%), Gaps = 143/673 (21%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQCIEERFSLLS 70
            E I +D+       ++D   +       G   +   AQ   L         E+   L++
Sbjct: 77  VERICRDVLGTNAGVMADALAWSGTFHGIGARLLRDYAQQIGLDADFTIHDREDSADLIN 136

Query: 71  SFFLTQKFTPQKNIITQE---------INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                  F+  ++    +                L + L+ +         +        
Sbjct: 137 LIRHDLGFSKTESRFPAKGTCLAIYSRAVNSETALDQVLRDAFPWCAAWEKQLR------ 190

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                      L A Y EAK+   VLD++DL++    ++ +  ++  I        +H+L
Sbjct: 191 ----------ELFACYVEAKQSQNVLDYDDLLLYWAQMVGESVIAEDI----GSRFDHVL 236

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ +Q  ++ +L              + L  VGD+ QSIYSF  A  + +L   
Sbjct: 237 VDEYQDTNRLQASILMAL----------KPQGQGLTVVGDDAQSIYSFRAATVRNILDFP 286

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         +I+ L  ++RST  ILT  + V  +       +             
Sbjct: 287 AAFS-------PPANIVTLDRNYRSTQPILTAANAVIDLASERFTKN------------- 326

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW +  S    +    ++               +  AR +A  + +      
Sbjct: 327 --------LWTERQSSERPRLVTVRD--------------EADQARYVADKVLDNREEG- 363

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    ++ K   VL R    +  +            I  V        D   +KD+
Sbjct: 364 ---------LKLKQQAVLFRASHHSGPLEVEL----TRRNIPFVKFGGLKFLDSAHVKDM 410

Query: 422 MALGRFILSQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           +A  RF  +  D ++   +++  P    S             +                 
Sbjct: 411 LAALRFAQNPRDRVAGFRLMQILPGVGPSTAQKALDLMAEDASPLSALAAMPAPPRSGED 470

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
           +   +  + E+                  A    +  +          L +         
Sbjct: 471 WTAFVSMLQEMKSGKAGWPAEIELARQWYAPHLER--LHEDAATRQADLLQLEQIA---- 524

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              Y+S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++    
Sbjct: 525 -GGYASRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWTRVFMLNVVDG 583

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                                                  +     +  EE  RLLYV MT
Sbjct: 584 CIPSD----------------------------------LAVGATAEIEEERRLLYVAMT 609

Query: 657 RASDQLIICKHSN 669
           RA D L +     
Sbjct: 610 RARDGLDLVVPQR 622


>gi|149241203|ref|XP_001526284.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450407|gb|EDK44663.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 939

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 93/642 (14%), Positives = 179/642 (27%), Gaps = 127/642 (19%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +   + +  K++ R    + +            L   Y+        LDF+D +++   L
Sbjct: 186 IPSFKRQIGKLKARGYLPETYLRLRDYNQTMGLLYRAYQNKLSDERKLDFDDCLLSCYKL 245

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS-PRTLFA 218
           + +  V   +         H+L+DE QDT+ IQ +++     +F  G   +      +  
Sbjct: 246 VTRIPVLHHV--------RHVLVDEFQDTNEIQLQLMY----EFAKGDPLNLQYQHNVTL 293

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  QSIY+F  A+     + K       T      S++ L  ++RST DIL   ++V 
Sbjct: 294 VGDPDQSIYAFREAQSNNFHKMKEHY----TTQDLSCSVVSLTENYRSTKDILDFSERVM 349

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +   +    + +S      +   +                                    
Sbjct: 350 TQQPDRILKNLNSQCPHSFKPVYLNL---------------------------------- 375

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            SSA+  A  IAY I  +              I+  +I +LVR    T  I         
Sbjct: 376 -SSAAQEASWIAYQIDFL-------QQLPHNPIKYDEISILVRAAYQTRAIE----AELV 423

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
             +I  +        +   +  +M   R      D ++ +  L  P   F    +  I  
Sbjct: 424 RKRIPYIMVRGKAFWERKEVTAIMDYLRVCGEPNDRIAILQTLNYPKRGFGAVTLEAIDR 483

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHE----------LIHIAQFCSPHDFFTLIL 508
                 T         +   +     +  ++            I+     S  D    +L
Sbjct: 484 AITTAITSSNATSINTSTTTTTVVDDLNNVNNTITVKDANNTFINKRTKKSARDVLRGLL 543

Query: 509 G---AKKGRQQFIS--------RFGNEVIDVLDEF--------LNFTLRNEQNSYSS--- 546
                   +    +        +  ++   +LD          L      +Q    S   
Sbjct: 544 ESNNQYGVKLPLKAKESLKGYIKMIDQAQVMLDNLEKEEQIDPLKVARLFDQIYTDSGLK 603

Query: 547 ---------------------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTA---KG 582
                                  E   + + +   +        N  +   +++     G
Sbjct: 604 KEYESEEKEEVRLNVEEVKTQFCEFTPQSDLFMEEVTLDEIEESNNGKTDLINSTNDDLG 663

Query: 583 LESPVVFLVD--------TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
                 F+          TG +    K    +  +          +++P           
Sbjct: 664 ENFIRKFVESVGLYEDDKTGDEKKKKKVGVAISTIHGSKGLEWPVVFVPGLSEGLLPAGF 723

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
            +     ++  E  R  YV  TRA   L I  +        S
Sbjct: 724 ALTTDDPNSLNEERRCFYVASTRAKTLLFISSYIEKEYSGSS 765


>gi|109898077|ref|YP_661332.1| exodeoxyribonuclease V, beta subunit [Pseudoalteromonas atlantica
           T6c]
 gi|109700358|gb|ABG40278.1| DNA helicase/exodeoxyribonuclease V, beta subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 1320

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 117/801 (14%), Positives = 240/801 (29%), Gaps = 105/801 (13%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
           K  W         I+  +  + + G          +Q    +      F           
Sbjct: 222 KRWWRENEVAQQIIDADLKANTKLGKA---DFIAKMQAFCLSDDSRADFD---------- 268

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKS-QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
                     ++        + L       F  +               SL   K+++ +
Sbjct: 269 KDLWTTFSPAKVLSAMKKTSKSLAHLDFSRFETLAHLQKQCHDQLLLAHSLDALKHISTN 328

Query: 137 YEEAKKKNCVLDFEDLIINTNDLL----------------------KKRDVSAWIRYKID 174
               K++  +L  +DL+ + +  L                      K       +   I 
Sbjct: 329 LASNKQRLQLLSPDDLLSSLHRALLAQVESNSGQVIEPDSELSHRDKLDTAHQSLAQAIQ 388

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                 LIDE QDT  +Q+++ R +    F             A+GD KQ+IY+F GA+ 
Sbjct: 389 LSYPAALIDEFQDTDPVQFDIFRIIYTQQFG-----DVTPCWVAIGDPKQAIYAFRGADI 443

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE-NAQGLSEDSTT 293
              +  K++                L  ++RS   ++  V+ +F+  E            
Sbjct: 444 HTYIAAKKLVDAS--------RQFTLGTNWRSQPSLVEGVNTLFTQSEAGFLFKDSIPFQ 495

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
            +     + G     Q    +   H +  +     W           + S LA++ A +I
Sbjct: 496 AVASVEQQSGLQVVGQAHNSLAFHHLTSNDGLPIGW---------GEAQSALAQQCALSI 546

Query: 354 SNMIGTDTIFSNG-KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +  I          K+R ++  D  VLVR R +   I      L     +  +   R  +
Sbjct: 547 AQFIHQGASGEAQIKQRPVRPGDCCVLVRDRNEADTIKQALAAL----GVDSMFLARKSV 602

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                  DL A+ + + +  +D      + S LF +    +  + +         E+  +
Sbjct: 603 FASQTAVDLFAIIQALANPSNDRYLRGAIASELFCYDATTLDALFSD--------EWQWQ 654

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                 + +  + +    ++ +            ++G     Q+ ++         L E 
Sbjct: 655 KLVEQFAYWHQLWQRQGLMMALNILMRHFKIAERLVGQYHDGQRRLTDL-----RHLVEL 709

Query: 533 LNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           L    +        L    + L +        +       N V+I+T HT+KGLE P+VF
Sbjct: 710 LQVQSQLMSGESQILHWFQAHLAEPDNDNEGQQIRLETEQNLVQIITQHTSKGLEYPLVF 769

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +       F+ +  +    +     D  +  ++           + +         E  R
Sbjct: 770 IP------FASRCREMKEAIYHNEKDGLVIDFLG--------ADENLALADHERLAEDIR 815

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY-----DSFHNDERVKKIKLTNSI 704
           LLYV +TRA     I   +N+  ++K   +     +            + V   +L +  
Sbjct: 816 LLYVALTRAVHYCFIGLWNNSHPQRKKESQLMQTALGRVLFNQGTQVSDAVITQRLDDLS 875

Query: 705 NKDEWIAYEWSTHHPENTPLE------REETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
              +     ++    E    E       +++ + L        +     K       + +
Sbjct: 876 QTIDVDYLGFTAQDAERKATEFKQFLLSQDSKESLQTNSNAMLRAAVLPKPVTRRWRLTS 935

Query: 759 PSTIDTKGKTNLESLLSDNQT 779
            S I ++      +   D   
Sbjct: 936 YSAISSQQHHEFVAPGQDEGA 956


>gi|172056743|ref|YP_001813203.1| UvrD/REP helicase [Exiguobacterium sibiricum 255-15]
 gi|171989264|gb|ACB60186.1| UvrD/REP helicase [Exiguobacterium sibiricum 255-15]
          Length = 724

 Score =  197 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 95/582 (16%), Positives = 184/582 (31%), Gaps = 111/582 (19%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK---NCVLDFEDLI 153
           ++++ +       +++R    K  ++   ++     + + YE+ K +   + ++DF+D++
Sbjct: 156 EDQMDELLRMISFVKNRLLVTKDIETLKTTIKHFPEIYSAYEQFKLRDPLHPLMDFDDML 215

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
              N +L +    A +     +   +IL DE QDTSL+Q +++  L              
Sbjct: 216 TYANTILSQD---AALLASYQRRFEYILTDESQDTSLVQHQLVEKLAL----------PH 262

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             L  V D+ Q++YS+ GA+  +++  K              +++ +  ++RS+ +I+  
Sbjct: 263 NNLCVVADDDQTLYSWRGADVSKIIHFKDTYP--------DATVLYMEQNYRSSKEIVET 314

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            ++     +        +            +  TV+       Q                
Sbjct: 315 ANRFIQRNKVRYPKKMYTENP-------SSRAITVETLPAYEDQT--------------- 352

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                            Y I  +                 K++ +L R    +  I    
Sbjct: 353 ----------------RYVIRQLREE-----------TNFKEVAILYRNNSSSINIMNAL 385

Query: 394 RFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
               +   I     D       H  +KD++          D      +        S+  
Sbjct: 386 ----DLAGIPFYIKDVDHKFFSHWVLKDVLHFIELANDPSDVEILAQIHTKFAGYISKVQ 441

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           + ++   ++        +Q        K Q  +K I  +    Q   P     +I     
Sbjct: 442 LQRLYELQNGENVFDLLLQHVEMKFYQKKQ--LKTIKSVFAAIQTARPAAALAMIRNELG 499

Query: 513 GRQQFISRFGN--EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
             +       +    ID L E LN       +  +SL      L       +   + + N
Sbjct: 500 YEKNLKKMSDSLGFSIDFLLEMLNTIENVASDLPTSLAFKERILHLEQLMRQAKSNKHQN 559

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V + T H+AKGLE   VF++D  + V       K                         
Sbjct: 560 AVTLSTFHSAKGLEFDRVFMIDLINGVLPSSDNIKS------------------------ 595

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                 K  +    EE  RL YVGMTRA   L +  +   S 
Sbjct: 596 -----YKDGQLEEMEEAVRLFYVGMTRARHDLHLLSYRYKSK 632


>gi|253575082|ref|ZP_04852421.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845538|gb|EES73547.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 732

 Score =  197 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 99/672 (14%), Positives = 206/672 (30%), Gaps = 123/672 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S N+  E         P     D +   SL+ E             Q         ++ +
Sbjct: 75  SANDMKERFKAFF---PELTPVDFSTIHSLAYEVVREHFRATQTPFQIIEGDIDAAQQET 131

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             S      K    +N+      +   D  ++L +       I+++    + +      +
Sbjct: 132 SGSEQLPLHKKIILRNLFKAIAGENITD--DQLDELTTYISFIKNKMIPSEQWSKVKVEV 189

Query: 128 TLAKYLNAHYEEAKK---KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
             A+ +   YE  K+   ++ +LD++D+++    +L + +    +  +     +++L DE
Sbjct: 190 PHAERILREYELFKQSGTRSLLLDYDDMLVVCERILAENEG---VLRRYQGRYDYVLTDE 246

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDTS +Q  +I  L              R L  V D+ QS+YS+ GA+P  +L  K++ 
Sbjct: 247 SQDTSRVQHAIIEKLVH----------KHRNLCVVADDDQSLYSWRGADPAYLLNFKQVY 296

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +         +I+ +  ++RS+ DI+ V +      ++       +     H+      
Sbjct: 297 PE--------AAILFMEQNYRSSPDIVNVANTFIQRNQDRYPKKMFTQNP-PHKPI---- 343

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                               +      Y D           A+ +A  I  +        
Sbjct: 344 --------------------EIRCLDDYGDQ----------AKYLAKEIQQI-------- 365

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMA 423
                     ++ +L R    +           +   I     D       H  ++D++ 
Sbjct: 366 ------ENLAEVAILYRNNSSSI----ALMNEFDRAGIPFYMKDADNRFFSHWVVEDILN 415

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
             R   + +       +        S++ +  +       E+V++ +         + + 
Sbjct: 416 FMRMTFTDKRPDILEKIHLKFNGYISKEQMAALLKI-QNDESVFDNLLNRVPLKDYQVKQ 474

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQ 541
            ++   E     +   P     +I       +       +    ++ L   LN       
Sbjct: 475 -LQMCKETFQEMKGMPPLHAIHVIRDRLGYEKALEKICEWKGFRMEYLIGILNTLEEI-A 532

Query: 542 NSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               +++E  + L+               N V   T+H++KGLE   V+++D    +   
Sbjct: 533 AGLHTMEEFAARLKYLESALRTARSKRGQNAVTFSTMHSSKGLEFERVYMIDLVEGIIPS 592

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K                                           EE  RL YVGMTRA  
Sbjct: 593 K----------------------------------ADKENAEMMEEATRLFYVGMTRAKK 618

Query: 661 QLIICKHSNTSN 672
            L +  +     
Sbjct: 619 HLELLTYKKRDG 630


>gi|295836625|ref|ZP_06823558.1| UvrD/Rep family helicase [Streptomyces sp. SPB74]
 gi|197699603|gb|EDY46536.1| UvrD/Rep family helicase [Streptomyces sp. SPB74]
          Length = 1221

 Score =  197 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 116/731 (15%), Positives = 206/731 (28%), Gaps = 120/731 (16%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCIEER-FSLLSSFFLTQKFTPQKNIITQEINKKSP 94
              +          A+ L++A        R FS L S  L       ++++      +  
Sbjct: 225 GSRLLADASRFQLAARVLREAPGPYPALTRGFSDLVSDLLALDGELSEHLVDPAALSRYD 284

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           +  E L+      +         +   + LA   L       Y  AK+   ++DF D + 
Sbjct: 285 E--ELLRTLAGARLSNDQLRKVPEAAAARLALTELTG----RYRAAKRARDLIDFGDQLA 338

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            +  L ++      +   +  +   +L+DE QDTS+ Q  ++ +L            +  
Sbjct: 339 LSARLAREHPE---VGETLRAQYRVVLLDEYQDTSVAQRVLLAALFGG--------GTGH 387

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            + AVGD  Q+IY + GA    +    R         G       L  + RS        
Sbjct: 388 PVTAVGDPCQAIYGWRGASVANLDDFPRHFP---HPDGTPARRQSLSENRRS-------- 436

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
                      G    +         R    G   L        D         +     
Sbjct: 437 -----------GGRLLALANDLAAPLRALHDGVEALHAPAGKAAD--------GFVRCAL 477

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                     LA R+A+ +                     +I VL R   D   I     
Sbjct: 478 LPTHAEEIDWLADRVAHYVRT--------------GTDPGEIAVLCRTAGDFSRIQAALV 523

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                 +I V       L     I DL A+   +     + S V +L  P +     D+ 
Sbjct: 524 A----REIPVEVVGLSGLLHLPEIADLRAVCEVLQDPGANASLVRLLTGPRWRIGARDLA 579

Query: 455 KICTQRH---------------------------------------ETETVYEYIQKFAN 475
            +  +                                         E     E    F+ 
Sbjct: 580 LLGRRARFLAGGRTGEDDPARRLAAAVEGIDPAEIVSLADAVDTFVEGGPDAEDGLPFST 639

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEF 532
              ++F  + + + EL   A      D    +L A     +  +          + L +F
Sbjct: 640 GARTRFARLGRELRELR-RALADPLMDVLHRVLAATGLDVELSASPNALAARRRETLGQF 698

Query: 533 LNFTLRNEQNSYS-SLQELISEL---EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           L+       N  + SL   +  L   EQY   +  A     N V+++T H AKGLE  +V
Sbjct: 699 LDTAASFAANEPAASLLAFLGYLRTAEQYEKGLDNALPGGENTVKVLTAHKAKGLEWDIV 758

Query: 589 FLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            +       F     ++       ++P         +    + +   +       +++  
Sbjct: 759 AVPGLVKAQFPSDRGRERFTARASVLPHPLRGDAATLPEVPAWTAKGL-KAFQDDMREHQ 817

Query: 644 QEEYNRLLYVGMTRASDQLIICK-HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             E  RL YV  TR    L+          ++      +   ++D         +     
Sbjct: 818 STEELRLGYVTFTRPRSLLLGSGHWWGPEQKRPRGPSAFLTALHDHCARGHGEIEHWAEP 877

Query: 703 SINKDEWIAYE 713
              +DE  A  
Sbjct: 878 PGPEDENPALR 888



 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 55/234 (23%), Gaps = 25/234 (10%)

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
              + +    +L       +++  P      +   L                 +      R
Sbjct: 978  DRDLDALEGELRRAAASVREVPLPPSLTATQVLRLAEDPDGLARDLARPLPQAPKPAARR 1037

Query: 783  GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            G   H  L+         R                  E +     I+  L+   +  A  
Sbjct: 1038 GARFHAWLER--------RLTAGHEQPRLPLPDEGEPEPRE-DAEISDDLDLEELKEAFE 1088

Query: 843  CDSYSEVS---VSGKINCPKKDIIISGRIDQISISQQ----NIFIFEYKTHHHVPQEIEH 895
               Y+      V           ++ GRID +    +       I ++KT          
Sbjct: 1089 RTPYAHRPAHRVEVPFQLSLAGRVVRGRIDAVYAHDEDGRRRYEIVDWKTGR-------D 1141

Query: 896  IPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
                   QL++Y     + +      +    ++V   +     +         +
Sbjct: 1142 RARADPLQLAVYRLAWAERHGIAPEEIAAAFVFVRTGETVRPTRLPGRAELERL 1195


>gi|325963968|ref|YP_004241874.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470055|gb|ADX73740.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 1201

 Score =  197 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 116/835 (13%), Positives = 211/835 (25%), Gaps = 128/835 (15%)

Query: 39  METGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI--NKKSPDL 96
           +  G    +      Q       + E +      F   K T  K +I       +   + 
Sbjct: 167 LRLGVERDVVLLGGAQAWQLASEVVEAYDGEYGHFRAAKSTLVKAVIQLAGECAEHLQEP 226

Query: 97  KEKLKKSQDEFIKIRDRFNTYK-------MFKSTLASLTL---AKYLNAHYEEAKKKNCV 146
           ++                                   L        +   Y  AK+    
Sbjct: 227 EDVEAWLMARLSDFEALPYLADKKKNPPQAAAELAGMLRTRASVADMVGRYASAKRSRGA 286

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LDF DL+     + ++  ++A +     Q    +L+DE QDTS  Q  +   L       
Sbjct: 287 LDFGDLVALAARVAQEVPLAAQM---ERQRYKVVLLDEFQDTSHAQLVLFSRLFG----- 338

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ------------- 253
                    + AVGD  QSIY F GA   ++    R       +AG+             
Sbjct: 339 -----GGHAVTAVGDPNQSIYGFRGASAGQLFHFVREFPVWNGSAGKSDPSQGPEVDSGS 393

Query: 254 --KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++R+   IL   + V S                   +         ++ 
Sbjct: 394 WSPAPTSYLTTAWRNGRSILAAAN-VMSEALGRAAAQRGPAGGGGPAAP--------EVP 444

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
               S H +  +     + S  D     +   +  R   + +                  
Sbjct: 445 PLQPSPHAAAGSVVLGRFGSDVDEAGAIAEDVLKYRMTDFELK------------PDGSR 492

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               I VL R+R     I            I+        L D   I DL+A  R +   
Sbjct: 493 VPPAIAVLCRRRAQMEPIRRQLEA----RGIAYEIVGLGGLLDTPEIVDLVATLRVLADP 548

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-----------TETVYEYIQKFANCGISK 480
               + + +L    +     D+  +     +              + E         ++ 
Sbjct: 549 GRSDALMRLLAGARWRIGPADLMALRDWSSQLARRRGVSGPAGGHLTEDGPTVLEGDLTD 608

Query: 481 FQHVIKYIHELIHIAQ-----FCSPHDFFTLILGAKKGRQQFISRFG------------- 522
              +++ +  L                    +L      +Q     G             
Sbjct: 609 GASLVEALDWLPREGWISANGRSLTPAARERMLRLSAELRQLRGYLGDDLTTLLGEVERA 668

Query: 523 ---------------NEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIK---- 562
                          ++    LD F +      + S    +   +S LE           
Sbjct: 669 MLLDIEVAARPGISIHQARRNLDAFQDAAAGFLRTSQRVDILAFLSWLEAAAAEENGLEA 728

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDDP 616
                +   V+++TVH +KGLE  VVF+    ++ F      +          P   D  
Sbjct: 729 PPSEVSREAVQLLTVHASKGLEWDVVFVPGLNAKDFPSDRDSRWSSGSAALPWPLRGDRA 788

Query: 617 GIPIWIPQSKSRNNIVSD---LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            +P W      +   +              + E  RL YV  TRA   L     +   + 
Sbjct: 789 DLPQWDLDQPDQKGWLDAEKDFKADALAHGELEERRLAYVAYTRAKYVLWASSAAWVGSR 848

Query: 674 KKSNQRTWYDM---VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT--PLEREE 728
               + + +     V       E  +      S+ +         T   E    P +  E
Sbjct: 849 SGRAEMSPFLAELEVLAGPLQGEAPRATIHPRSVEEASLPETSPLTLDAEVAGWPYDPLE 908

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
                   +++          +     +L        G+      +        G
Sbjct: 909 GPVDPRTGERLRLAAGRRNAMETASARVLAALAAPQHGEARDLRGVGPAGGTQPG 963



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/299 (9%), Positives = 67/299 (22%), Gaps = 20/299 (6%)

Query: 657  RASDQLIIC-KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            R  ++L +     N      +               D R                A +  
Sbjct: 914  RTGERLRLAAGRRNAMETASARVLAALAAPQHGEARDLRGVGPAGGTQPGARNVPAPDAG 973

Query: 716  THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                 +        + +    +   + +  P     +    L+        +        
Sbjct: 974  LPGVSSGWAREAALLLERRARRSSAQDVHLPTHISASTLVELDEDPSAVLWRLRRPVPRE 1033

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
               +  +G   H  ++  F                         +    L ++    +  
Sbjct: 1034 PGMSARKGTAFHAWVEEYF-------GTAGMLDLGDAPGSDDHIDAAYDLDAMVATFKAS 1086

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIE 894
                       S   +   +     D+++ GRID +       + + ++KT      E  
Sbjct: 1087 PWAH------RSPAFIEVPVETRVGDVVVRGRIDAVFQDADGRWDLVDWKTGRRPSGERL 1140

Query: 895  HIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                    QL+ Y          P + +     YV++ +V              I    
Sbjct: 1141 RTR---AVQLAAYRLAWSRLKGVPLEDVRAAFFYVADNEVVRPHDLGSAAQLEGIVAAA 1196


>gi|309389723|gb|ADO77603.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 1051

 Score =  197 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 144/846 (17%), Positives = 283/846 (33%), Gaps = 94/846 (11%)

Query: 86   TQEINKKSPDLKEKLKKSQDEFIK-IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
             +   KK+  LKEKL+   + F K +       ++  +    +  AK +   Y++ K K+
Sbjct: 267  NKLRAKKTKALKEKLEFEYNLFRKKLAVEIFNQEVIPAEKEIINFAKLVLKLYQKLKFKS 326

Query: 145  CVLDFEDLIINT--------NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
                  D+   T         DL+K  + ++++   +  +   + IDE QDTS++QW+++
Sbjct: 327  GQFTHSDISNYTFKYLKNEEIDLIKNGEATSYLLDLLGGDYQALFIDEFQDTSILQWKIL 386

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            + L ++           +T  AVGD+KQSIY + G E K       I +           
Sbjct: 387  QPLIKN----------AKTFIAVGDQKQSIYGWRGGEKKLFASLAEIIE---------AK 427

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
               L   +RS  +I+ +++  FS  E           +     + +   G+   +     
Sbjct: 428  TERLEHCYRSDQNIINLINNFFSKLEVDWNYQPVKAVSRNKGLTEVLYGGSSAYYNTKTK 487

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
            +  +    +                       +   I   + ++      +K       +
Sbjct: 488  KFAALAPEK-----------------QNQIEELNNKIKADLSSEIAADIKQKYQKDFAQV 530

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             VL R  K+  LI         D +I  +  +R  L D    K L A   F  +  D  S
Sbjct: 531  SVLARTAKELDLIADSL----ADAEIPYILENRNSLLDAPLPKALTAFLYFAAN-RDFYS 585

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
             +  L+S L   S  +   I   + E    +   Q       ++   + K + E I    
Sbjct: 586  LLKFLRSDLIKISHANFKWILKNQKEINKYFNSTQTLVTEIFNEKLEIKKILTE-IKRVI 644

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                      +    +     ++   +  +  +  F            SSL++L+  L +
Sbjct: 645  DLDYEQLINYLYQKTEIVN--LAADNSLALKNIYSFFEILNSF-----SSLKKLLKYLSE 697

Query: 557  --YPPTIKRAHSANHNEVRIMTVHTAKGLESPV-VFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  +K+    N   V +MT+H AKGL  PV  F  + G +  +       ++    N
Sbjct: 698  NKESEELKQTKVENKEAVSLMTIHQAKGLSLPVEYFYWNPGRRGANSGTGINFYLDFDQN 757

Query: 614  DDPG---IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                   + I        + +  D     +K  + E    LYV +TRA + L +   +  
Sbjct: 758  YQNLNNYLFIQNKYLSILDWLDYDFKAKAEKKAEMEEINNLYVALTRAENDLHLYIEAPR 817

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
              + K+          +  + ++ +      N++ +      +      +N        +
Sbjct: 818  KIKAKAEL---MWAGSNYDYYEKMLLNSVQANNLLELLETETKGQALVLKNLNKNESYQL 874

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
              L    K      +       + Y               +           GL +H  L
Sbjct: 875  SNLNKYLKQKAVPLARNLAIEKQKYKFFQKQASGLKIAENKLQ---------GLALHYYL 925

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE-NPMMTTAMSCDSYSEV 849
            + I    + ++K+      +K   L    +   ++    + +E +P      S     EV
Sbjct: 926  ENIKYNQKKEKKSAAKLLKSKYGNLLGEAKITAIIEKSNQFIEAHPE---IFSKKY--EV 980

Query: 850  SVSGKINCPKKDIIISGRIDQISIS-QQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                 +           RID++ +  Q  +  I +YK+  +  ++ E        QL  Y
Sbjct: 981  FNEYLLKAKTNLGEKQYRIDRLLVDRQNKLVKIIDYKSGSY--RDPE--------QLKSY 1030

Query: 908  EKILKD 913
            ++IL  
Sbjct: 1031 KEILAA 1036


>gi|297567904|ref|YP_003686874.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
 gi|296852353|gb|ADH65366.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946]
          Length = 646

 Score =  197 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/680 (15%), Positives = 218/680 (32%), Gaps = 143/680 (21%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            + E    + +       +  +     +      G    L+K   L  A+Q +  E   +
Sbjct: 55  EMKERIARLVEAPLAEAVWVGTFHRFCLQSLQVYGREIGLEKVAVLDSAAQRKLAERIIA 114

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L      + FTP   +    +++ +    + + +    +  + ++   ++         
Sbjct: 115 GLFPAKPPRGFTPMAALG--AVSRAANSGWDDI-QLATMYADLTEKIVNFRW-------- 163

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                    YEEAKK    LD++DL++    LLK  + +A +  +      ++++DE QD
Sbjct: 164 --------AYEEAKKGLGALDYDDLLLRGVRLLKLSEGAARMVRRRAA---YLMVDEFQD 212

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q E++R++            +   L  VGD  +SIY + GA  + +L  ++     
Sbjct: 213 TNGVQLELVRAIA---------PGTSPNLMVVGDPDRSIYGWRGANYRTILEFRQHYP-- 261

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++  L  ++RS A ++ V +++ +     +   +++                
Sbjct: 262 ------GAAVYGLYTNYRSQAGVVEVANRIIAQNATRKPEMQEAHLPQSEEPF------- 308

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                       L    +    A  +A  +    G         
Sbjct: 309 ----------------------------LLVAKNRWEEAHFVAQAVEFYRGQG------- 333

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              I  +++ VL+R    +  +    R       I           +   I+  MA+ + 
Sbjct: 334 ---IALEEMAVLMRANFLSRDLEQALR----LRGIPYQFTGGRSFFERREIQLGMAVLKV 386

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQKFANCGISK----FQ 482
           + + +D L+   +++  +       I K +   +    +  E  +  A     +      
Sbjct: 387 LANPKDSLAVAALVEEMVEGAGPLGIQKVLEAAKAANLSPLEAFRNPAMVKGLRGKEVQA 446

Query: 483 HVIKYIHELIHIAQFCSP-----HDFFTLILGAKKGRQQFISRFGNE------VIDVLDE 531
             ++    L       +      H      L      + ++ R G E          LD 
Sbjct: 447 EAMRLAEVLQDQVARLAAEAPEYHALLKETLDRLGF-EAWLDRLGEESEQVYSRKANLDR 505

Query: 532 FLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            L      ++ +  + LQ+L+  L           +     V +MTVH +KG+E  VVF+
Sbjct: 506 LLQGMQEWQEVNPGAPLQDLVGTLLLEAGDT---PAEEGQGVHLMTVHASKGMEFRVVFV 562

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     +F                                              EE  RL
Sbjct: 563 IGLNEGLFPLSKASSSF----------------------------------EGLEEERRL 588

Query: 651 LYVGMTRASDQLIICKHSNT 670
           +YV +TRA + L +   ++ 
Sbjct: 589 MYVAVTRAKEVLHLSYAADG 608


>gi|86356226|ref|YP_468118.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
 gi|86280328|gb|ABC89391.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
          Length = 686

 Score =  197 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 106/673 (15%), Positives = 198/673 (29%), Gaps = 143/673 (21%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQCIEERFSLLS 70
            E I +D+       ++D   +       G   + + AQ   L         E+   L++
Sbjct: 77  VERICRDVLGSKTGVMADALTWSGTFHGIGARLLREYAQQIGLDADFTIHDREDSADLIN 136

Query: 71  SFFLTQKFTPQKNIITQE---------INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                  F+  ++    +                L + L+ +         +        
Sbjct: 137 LIRHDLGFSKTESRFPAKGTCLAIYSRAVNSETALDQVLRDAFPWCAAWEKQLR------ 190

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                      L A Y EAK+   VLD++DL++    ++ +  ++  I        +H+L
Sbjct: 191 ----------ELFACYVEAKQAQNVLDYDDLLLYWAQMVGESVIAEDI----GSRFDHVL 236

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ +Q  ++ +L              + L  VGD+ QSIYSF  A  + +L   
Sbjct: 237 VDEYQDTNRLQASILMAL----------KPQGQGLTVVGDDAQSIYSFRAATVRNILDFP 286

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                          I+ L  ++RST  ILT  + V  +       +             
Sbjct: 287 AAFS-------PPADIVTLDRNYRSTQPILTAANAVIDLASERFTKN------------- 326

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW +  S    +    ++               +  AR +A  + +      
Sbjct: 327 --------LWTERQSSERPRLVTVRD--------------ETDQARYVAEKVLDHREEG- 363

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    ++ K   VL R    +  +            I  V        D   +KD+
Sbjct: 364 ---------LKLKQQAVLFRASHHSGPLEVEL----TRRNIPFVKFGGLKFLDSAHVKDM 410

Query: 422 MALGRFILSQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           +A  RF  +  D ++   +++  P    S             +                 
Sbjct: 411 LAALRFAQNPRDRVAGFRLMQILPGVGPSTAQKALDLMSEDASPLSALAAMPAPPRSGED 470

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
           +   +  + E+                  A    +  +          L +         
Sbjct: 471 WTAFVSMLQEMKSGKAGWPAEIELARQWYAPHLER--LHEDAATRQADLLQLEQIA---- 524

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              Y+S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++    
Sbjct: 525 -GGYASRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWTRVFMLNVVDG 583

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                                                  +     +  EE  RLLYV MT
Sbjct: 584 CIPSD----------------------------------LAVGATAEIEEERRLLYVAMT 609

Query: 657 RASDQLIICKHSN 669
           RA D L +     
Sbjct: 610 RARDGLDLVVPQR 622


>gi|146329606|ref|YP_001210049.1| exonuclease V, beta subunit [Dichelobacter nodosus VCS1703A]
 gi|146233076|gb|ABQ14054.1| exonuclease V, beta subunit [Dichelobacter nodosus VCS1703A]
          Length = 1198

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 133/979 (13%), Positives = 277/979 (28%), Gaps = 144/979 (14%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            +   +  +E++  + +          + ++ +++L       + L   + L QA  TQ  
Sbjct: 241  DEIDVPSDENFAALLEQTKN------TKMDDFLALFASQKIVSKLTDPELLWQALLTQTP 294

Query: 63   EER-----FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
             +           +   T +   +     Q       D           F+  ++   T 
Sbjct: 295  IDEENIKIIETWHNAVKTGEGFLKAAKSEQIETICQHDCAPIFLAVTSAFLAQKNLNKTL 354

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                +    L     + +      +      F       N  L     +A  RY I    
Sbjct: 355  AACAAKETLL----AVRSQLPAQLEMQGKATFNHYTARLNQALAGESGAALARY-IAHRY 409

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              +L+DE QD +  Q + I  +                L  VGD KQ+IY F G +    
Sbjct: 410  PVLLVDESQDLNAQQAQFIERIYLKNLEAD-----RHFLLLVGDPKQAIYRFRGGDVANY 464

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            LR K    ++            L  ++RS+  ++  ++K++       G  +    T   
Sbjct: 465  LRLKAAFSQQ--------ECYSLTKNYRSSPALIAALNKLYQDRAAFGGGIDYEPMTAAV 516

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                +  V    +   +        N                         I + I N+ 
Sbjct: 517  TQRALQSVDGAAITPPLYWLETKNDNEHL---------------------AIVHLIQNLT 555

Query: 358  GTDTI---FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
              ++I        +R ++  DILVL   R          + L   + I+V  +    +  
Sbjct: 556  AKNSIYAYHDKQNRRPLRYSDILVLGTSRSKL----EELQILLQQHGINVDYSAEKSIFA 611

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                  +      +L+ +       +  SP F  S   + ++      +  +        
Sbjct: 612  SDLAAAIATFLAAMLAPQQQEQLNRLFISPFFRLS---LAELTALSQPSSALNYAQLSAV 668

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                 +     K +  L                L      +   +         L +   
Sbjct: 669  LTEAEQLWQQKKLLSALQLFLTTDFAGLTIWERLARLPYPENERALLD------LRQLQQ 722

Query: 535  FTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                  +    +L + +   +            K     + + +R+MT+H+AKGL++PVV
Sbjct: 723  IIAD--RGRLDTLDQFLRWWKFMLTTLPTADWAKMMPLPSQDALRLMTIHSAKGLQAPVV 780

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
             +   G                       +      +     I ++ ++  ++   +E  
Sbjct: 781  IISGLGKHRK----------------HDALFYPYHTATGDFRIATEKVEENQQEDDDEKA 824

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY------DSFHNDERVKKIKLTN 702
            RLLYVG+TRA D L +   S    +          M         +   +     +    
Sbjct: 825  RLLYVGLTRAEDLLFVALQSLRKKDGDFFADAHAGMKRLDPVRFKNTAVNHGFLSVNPEE 884

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN---P 759
               +     Y  S+       +E++ T  +            +  +        ++    
Sbjct: 885  LAQRLTQPQYTLSSASETIATIEQDPTYPRQRFYGWSKSSFTALTRYVDENTVDISLPDY 944

Query: 760  STIDTKGKTNLESLLSDNQTFNRGL----IIHKLLQVIFTLPEHKRKNFIT------SYC 809
            +  + + +T  +  L+    F RG      +H+LL+ +   P    +  I          
Sbjct: 945  AEEEAESETIADPDLALPARFARGTKAGSFLHQLLKDLPETPAQFWRGHIERLAKQYRLL 1004

Query: 810  TKNAKLWPAKEYKNLLLSITR--LLENPMMTTAMSCDSYSEVSV---------------- 851
             + A L    +Y+    +I    L+    +          E+                  
Sbjct: 1005 ERTAALDDYAQYEAWFQAIMASPLVSQTTLAALSPAQKVDEMKFILHVAGKSFNISAVNR 1064

Query: 852  -----SGKINCPKKDIIIS---GRIDQISISQQNIFIFEYKTHHHVPQEIEHIP------ 897
                    +   +K   I    G ID         +  +YK+++      E+        
Sbjct: 1065 LFERWEKPLTLHQKQASIRFLCGEIDFCYQQDDKYYFIDYKSNYLGTAPQEYHVSAMKKA 1124

Query: 898  ---YTHIAQLSIYEKILKD 913
               + +  Q  IY+  L  
Sbjct: 1125 MNEHHYWLQALIYQTALHR 1143


>gi|210635292|ref|ZP_03298488.1| hypothetical protein COLSTE_02419 [Collinsella stercoris DSM 13279]
 gi|210158453|gb|EEA89424.1| hypothetical protein COLSTE_02419 [Collinsella stercoris DSM 13279]
          Length = 1197

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 115/677 (16%), Positives = 212/677 (31%), Gaps = 87/677 (12%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
           V+ +  Y  +++           + L               L + F +       ++  +
Sbjct: 215 VALMEAYREIALAPSYANAEAAQRALDALDAYVGSARDMEALRTCFASCDAL---SLRGR 271

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            + K       ++++ +  F              +    + LA  + A YE  K +  +L
Sbjct: 272 GMGKDEKAAVAEVRRERTLFFA---ESYLGMKGDALSQLMDLAADVQAEYEALKAEKSLL 328

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           D +DL+    D LK   +   +R +   +   +++DE QDT+  Q E++R L        
Sbjct: 329 DNDDLLTRAYDALKDNPL---VRDEFAGKFKMVMVDEFQDTAQQQVELVRLLCS------ 379

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +  R L  VGD +QSIY F GA+     R+K+  +        K     L ++FRS 
Sbjct: 380 ---ADGRELCTVGDAQQSIYRFRGADVSVFRRKKKEVE-----LSGKGVSCSLDVNFRSH 431

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           ADIL   DK+F   E      +         ++R G    V                   
Sbjct: 432 ADILAYADKIFEGGEGNPLGRDFLHLDSCGEATRKGARALVDPTTARRQA---------- 481

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                      +  A   AR IA   + +   +              D+++L+++  D  
Sbjct: 482 ---VLVAGGSSQERAQHKARAIAERFARLRARE---------GFAPGDMVILMKRLTDAD 529

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF-VCMLKSPLF 446
           +     R         VV     +      +  + AL  F+ + +D     + +L SP+F
Sbjct: 530 VYARAVRAAGMP---CVVAGGTSVFRQAPEVGAITALLAFLANPDDGQKGLMPLLTSPMF 586

Query: 447 NFSEDDIFKICTQRHETETVYEYIQ-----------KFANCGISKFQHVIKYIHELIHIA 495
                ++  + T       + +                    +       + +   +   
Sbjct: 587 CLGATELLALATHIDPQAGIVDSRTLTGQVFLSGEIMEEFGELPLLTRAREVLGRAVRRV 646

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ------- 548
                 D    ++       +       +   V    L      E+ S            
Sbjct: 647 GNDRVADIVRDVVNESGWLFRLERSGQAQDRAVAANVLKALDIVERESAGRAFAPRLVAR 706

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK------- 601
              S +     +    + A+ + VRIMTVH +KGLE PVV + +                
Sbjct: 707 AYESHIAHIKESPAALNGADEDAVRIMTVHASKGLEFPVVAVAECDGISNDGDALQAVER 766

Query: 602 ---HIKKMHIMPSLNDDPGIPIWIPQSKSRN----------NIVSDLIKHLKKSTQEEYN 648
                                + +P+    N             + + +  +    EE  
Sbjct: 767 EGRTYWSALPNRFDLAGDADMLTVPELDEDNVTHEVPERAAEAFAYMKRENRLFDYEEAA 826

Query: 649 RLLYVGMTRASDQLIIC 665
           RLLYV +TRA +  II 
Sbjct: 827 RLLYVAITRAREVAIIA 843



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 57/211 (27%), Gaps = 8/211 (3%)

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
             A ++     E +            +     +     ++    E   +  S     G + 
Sbjct: 957  AAVDYRLVPAERSSRASYSYSSISRELHAEAEDRDVAVRTPQGEGADVADSGSREPGSSQ 1016

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                       N G ++H   Q +      +                 +++   +  +I 
Sbjct: 1017 AAHAGDATDATNLGSVVHDACQWMIETGSDEVP-VERVDALCRYWGCTSEQRVRIDAAIE 1075

Query: 830  RLLENPMMTTAMS-CDSYSEVSVSGKINCPKKDI---IISGRIDQISISQ---QNIFIFE 882
            R   + +    +      +EV    +      D       G ID +        +  + +
Sbjct: 1076 RWRGSKVRAEVLRWPCVRAEVPFYSRGMEELGDRFGAYAEGAIDLLCTDPSDSGHALVID 1135

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            YKT  H  +  E +   H  Q  +Y  +L  
Sbjct: 1136 YKTGGHADETPEQLREKHALQARVYVDVLHK 1166


>gi|182417609|ref|ZP_02948931.1| ATP-dependent helicase [Clostridium butyricum 5521]
 gi|237667256|ref|ZP_04527240.1| UvrD/REP helicase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378564|gb|EDT76093.1| ATP-dependent helicase [Clostridium butyricum 5521]
 gi|237655604|gb|EEP53160.1| helicase, UvrD/REP family [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 669

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 96/554 (17%), Positives = 189/554 (34%), Gaps = 120/554 (21%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + +     YE+ K++N   DF+DL I T ++L+       +     +   +IL+DE QD
Sbjct: 154 EIFEEAYNTYEQYKEENNKWDFDDLAIKTLEMLQND---KNLLEGYRRLFKYILVDEFQD 210

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
              +Q + ++ + ++         S  +LFAVGDE Q IYSF G++P+ ++   +I +  
Sbjct: 211 CDEMQIDFLKMINDE---------SENSLFAVGDEDQCIYSFRGSKPEYMVSFDKIFEN- 260

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                       L +++RS  +I+    +V    +                         
Sbjct: 261 -------GKKHYLSINYRSKKNIVEKSKQVIKYNKERNNK-------------------- 293

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                      + + N   +    +F+S  ++     LA  I                 K
Sbjct: 294 -----------EIKWNKDNDGIIKWFNSYNEKIQGEALADII--------------EENK 328

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGR 426
           K  I  +D  +L R   ++  I  +        +I     DR     +H   KD+++  +
Sbjct: 329 KLNISYEDNAILYRTNIESMSIIDVF----TKRRIPFTLIDREYNFFEHFICKDIISYLK 384

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             ++  D  SF  ++  P    S+ ++  + T   E       I K       K +    
Sbjct: 385 LSVNDFDKESFFRIINKPFRYVSKANLGYVRTYPKEEALFDILINKDDTPPFQKKKLDEL 444

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQF------ISRFGNEVIDVLDEFLNFTLRNE 540
                 H     S     + I+               I++   +  D+++EF        
Sbjct: 445 KKDV--HYLNKISLSSAISYIIMDLGYIDHIREYAKKINQSFEDFEDIIEEFKLSAEGY- 501

Query: 541 QNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                ++ E ++ +E+   +I  +    +   V + T+H  KG+E   V++++       
Sbjct: 502 ----KTIFEFLAHIEEVKQSIDESKKKKDREGVILSTIHGVKGMEFKNVYIINACEDTMP 557

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H+  K+ ++                                           YVG+TRA 
Sbjct: 558 HQSSKEENLEEERRL------------------------------------FYVGITRAI 581

Query: 660 DQLIICKHSNTSNE 673
           D L +    N   +
Sbjct: 582 DNLYLFSPRNRKGQ 595


>gi|319784375|ref|YP_004143851.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170263|gb|ADV13801.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 697

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 120/732 (16%), Positives = 213/732 (29%), Gaps = 128/732 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I  ++       ++D   +       G   +   A    L  A    
Sbjct: 80  RRAASEMARRVERIAGEVLGRDAAVITDALTWAGTFHGIGARLLRDYALEIGLDPAFTIH 139

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F+  +    T+        +  +   +Q    ++         
Sbjct: 140 DREDSADLMNLVRHELGFSKTEARFPTKGT---CLAIYSRAVNAQAPLNEVLGS-----A 191

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           F          K L A Y EAK+   VLD++DL++    +  + +++A     +    +H
Sbjct: 192 FPWCAGWAEQLKELFAGYVEAKQAQNVLDYDDLLLYWAQMAAEPEIAA----HLGGRFDH 247

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++ +L                L  VGD+ QSIYSF  AE + +L 
Sbjct: 248 VLVDEYQDTNRLQASILMAL----------KPDGAGLTVVGDDAQSIYSFRAAEVRNILD 297

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                 + A        ++ L  ++RST  IL   + V          +  S      R 
Sbjct: 298 FPNQFAQAAD-------VVMLERNYRSTETILAAANAVIGEASERFTKNLWSERKSSDRP 350

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             +     V+                                    A  +  TI      
Sbjct: 351 KLVTVRDEVE-----------------------------------QANFVCDTILAEREA 375

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T            K   VL R    +  +            I  V        D   +K
Sbjct: 376 GTAL----------KSQAVLFRASHHSGPLEIEL----TRRNIPFVKFGGLKFLDAAHVK 421

Query: 420 DLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           D++A+ RF  +  D ++   +L+  P    S              E +     +      
Sbjct: 422 DVLAVLRFAENPRDRVAGFRVLQLLPGIGPSAAAQIVETMTTALDEAMGLAGWRPPQRAA 481

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +   +     L   A    P D   + L  +   ++          D+L       L 
Sbjct: 482 DDWPGFVALYSGLR--AGARWPADLEQIRLWYEPHLERIHEDATTRRADLLQ------LE 533

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
              + Y+S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++T 
Sbjct: 534 QIGSGYASRERFLTELTLDPPDATSDQAGPPHRDEDYLILSTIHSAKGQEWKNVFVLNTV 593

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                         K   EE  RLLYV 
Sbjct: 594 DGCIPADLGVGT----------------------------------KEDIEEERRLLYVA 619

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA D L +          ++ +   +     +      +       S           
Sbjct: 620 MTRAKDNLNLVMPQRFFPHGQAARGDRHLYASRTRFIPASILAAFEQMSWPSALAAQGRA 679

Query: 715 STHHPENTPLER 726
           +          R
Sbjct: 680 ARPEVRVDIGAR 691


>gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1]
 gi|300074875|gb|ADJ64274.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 707

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 94/672 (13%), Positives = 190/672 (28%), Gaps = 121/672 (18%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R    +      +   +  L          +       G   + + A+ +         
Sbjct: 86  RRAAADMGRRVGQVIAQVLGLAASDTPPQLHWSGTFHAIGARLLREYAKVIGLEEDFTIQ 145

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           +   S      L              +      +  +   ++ +  ++  +   +   + 
Sbjct: 146 DRGDSEDLMGLLRHDMGLSATEKRFPLKATCLAIYSRAVNTRQDLGEVLQQHFPW-CCEW 204

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                     L   Y +AK++  VLD++DL++   D+L    ++  +     Q  +H+L+
Sbjct: 205 ERPL----GELFGRYVDAKEEQHVLDYDDLLLFWADMLGDAQIAQSV----GQRFDHVLV 256

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+ +Q E+++ +                + AVGD+ Q+IYSF GA  + +L    
Sbjct: 257 DEYQDTNRLQAEILQRM----------KPDGAGVTAVGDDAQAIYSFRGATVRNILDFPG 306

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           +         Q   ++ L  ++RST  IL   + V +           S      +   +
Sbjct: 307 LF-------TQPVRLLTLEQNYRSTQPILHASNAVIADAPERHVKHLWSDKPSSQKPQLV 359

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 +                                    AR +A  I         
Sbjct: 360 VIPDEAE-----------------------------------QARWVANRILAHREEG-- 382

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   +  K   VL R    +  +            I  V        +   IKDL+
Sbjct: 383 --------LTLKSQAVLFRTATHSAALELEL----ARRNIPFVKFGGLKFLESGHIKDLL 430

Query: 423 ALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           AL R   +    ++ +  L+  P    +                              ++
Sbjct: 431 ALLRLAHNPSGRMAGLRALQLIPGVGPATARKVLDLMAAAADPADALLNFGAPANIALQW 490

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           Q        +   +                + ++++           +++          
Sbjct: 491 QAFADTYALMRRASASWPTDILAARDWYLPQLQERY--DDAQARAADIEQLAVLA----- 543

Query: 542 NSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           N Y+S ++ ++EL   PP      S     + + + + T+H+AKG E   V +++     
Sbjct: 544 NGYASREKFLTELTLDPPEASSDFSGPPLRDEDYLTLSTIHSAKGQEWRSVHILNVVDGC 603

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                                                      ++   E  RLLYV MTR
Sbjct: 604 IPSDLATGS----------------------------------EAEIAEERRLLYVAMTR 629

Query: 658 ASDQLIICKHSN 669
           A   L +     
Sbjct: 630 ARQYLHLVVPQR 641


>gi|161613408|ref|YP_001587373.1| hypothetical protein SPAB_01122 [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
 gi|161362772|gb|ABX66540.1| hypothetical protein SPAB_01122 [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
          Length = 1127

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 137/895 (15%), Positives = 270/895 (30%), Gaps = 173/895 (19%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYK--------MFKSTLASLTL-AKYLNAHYEEAKKKNC 145
            D+   + +++DE           +          +   A   L    +   YE+ KK+  
Sbjct: 333  DILNAISRAKDEVTDALQYRALAQEMLNSASSAEERETAERALEVAVVYDTYEKIKKQRG 392

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
             LDF DL++    LL+  +    +R ++     H+++DE QD +     ++++L      
Sbjct: 393  CLDFGDLVMRPVQLLETNEE---LRQQLQHNYQHVMVDEYQDVNRSSIRLLKAL------ 443

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK-RINQKRATNAGQKFSIIELPLSF 264
                      L+ VGD KQSIY F GA    + R                     L +++
Sbjct: 444  ----KPDGENLWVVGDAKQSIYRFRGASSFNISRFCVDDFP--------GGESQSLEINY 491

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS ++I+T   +  S  +     S  +   +              L  ++ +        
Sbjct: 492  RSVSEIVTAFSEFASEMKTGGIKSHLAANRLASG-----------LLPEIQTVESGDLVS 540

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                                    +A +I  M                 +D  V  R  +
Sbjct: 541  S----------------------ALAESILRMREIG----------FSYRDQAVFCRGNE 568

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                +      L     I V+      L +   +KDL+AL   +  +      + +   P
Sbjct: 569  KLSALGQDLERL----GIPVLFLG--SLFERQEVKDLVALVSLLTDKRAMG-LIRIACWP 621

Query: 445  LFNFSEDD----IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
             F    +D    +       +E           +  G+S F+ +   +H     +     
Sbjct: 622  EFQMPMEDVTQVLEHFRITDNEPVNWDISSLSLSPEGLSSFEKIKNVLHGFSSASH--PW 679

Query: 501  HDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--- 554
                T++L       Q  +     G      + +F+NF  +  + S   + ++++ +   
Sbjct: 680  FVLATVLLDRTSVVAQIATSEAVNGQARGIAIWQFMNFARQQFRGSGFPIMKMMTRIRRL 739

Query: 555  ----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                +        A + N + V++MT+H AKGLE PVV L           +       P
Sbjct: 740  LKLNDDRDLRQLPAATQNIDAVKLMTIHGAKGLEFPVVHLSGVNKDTIPGSYRGVKCPPP 799

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                  G                      K++ + E   L YV M+RA D+L     +  
Sbjct: 800  EGMVAGGN--------------GSSEDIAKEAHENEQECLFYVAMSRAKDRLFFYGATTK 845

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               K   + + +               +     ++++           PEN PL  E   
Sbjct: 846  GQNKSLRRLSDF---------------LDRIGPVSRNATTPILKLPIAPENKPLPVEFQG 890

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR-GLIIHKL 789
                    +      P +        +     +T      E++    QT  R G      
Sbjct: 891  DVNFSANALDLYNNCPRRFLYTYLLSIGGRRQETAFMQMHEAVRDVLQTITRLGN----- 945

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
               +          F+     ++  +    +Y+N+   +                +  E+
Sbjct: 946  -GHVLDWQPILETAFVKQGLHEHGYV---DDYRNIAEKMLTFFTQSR------KGASVEM 995

Query: 850  SVSGKINCPKKDIIISGRIDQISISQQNIFIFE--------YKTHHHVPQEIEHIPYTHI 901
                 ++     + +             + I +        + T H      + I +   
Sbjct: 996  LDEFVLSLTDAKVTVR---------ADEMLIRDDLRTLRCIF-TGHAPGAGPKGIRH--- 1042

Query: 902  AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP--QNKLNKA---FAEISTKI 951
                 +    K+ +P  S+   L+Y+++  V  +      LNK      EI T+I
Sbjct: 1043 ---EAFSLATKNFFPGSSVE--LVYLADNTVHPLNLKPQTLNKCENKLREILTRI 1092


>gi|317014973|gb|ADU82409.1| putative recombination protein RecB [Helicobacter pylori
           Gambia94/24]
          Length = 946

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 132/919 (14%), Positives = 284/919 (30%), Gaps = 180/919 (19%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
            P  +    ++   L         ++  +T    ++T    + F    +  LT      +
Sbjct: 197 DPNKKEPAFDEKGFLEKLRSLNNQIQSIETASDRAKTAIKCDSFRGFLNSSLTWLEKKSE 256

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
               +++  + P L+ + ++ +++  +  +   T        A           Y++A  
Sbjct: 257 YRYFKKLKSEIPTLESECEEIENDLKRYYEAKET--------AIFKKFPKFIQLYDKATS 308

Query: 143 KNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL  ++++    
Sbjct: 309 KIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSLNDYKILAPFI 368

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           ++   G       R++F VGD KQSIY+F G+                 +  + F    L
Sbjct: 369 DEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS-----------FSSLFESVSKDFYHDNL 417

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             + RS   I+  V+ +F         +       +  +++    G V++          
Sbjct: 418 EFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKTSNNKHVTEGYVKVSLVA------ 471

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                  +L  ++     N++             I  KDI +L 
Sbjct: 472 -------------------DEKELLLNQVLQEAQNLLDHH----------IDPKDITILC 502

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
              KD   I    +   +    S   + R        I                     +
Sbjct: 503 ATNKDALEIKNYLQERLSVICPSTESSARLSQLVESKIIKNALEYALAEEPYKPFYKHSV 562

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           LK  L  +  DD   +     + E+                                   
Sbjct: 563 LK--LAGYLHDDAIALPGFNPKKES----------------------------------V 586

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
             F   I+   K   +                L   +  E  +       + +LE     
Sbjct: 587 AGFVWKIMELFKLYGEPAQSC-----------LELAIGCEDAN-----GFLEKLEAKEIA 630

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  N    +IMT+H +KG++ P V + +      +  H  +     +  +   +  
Sbjct: 631 SF-----NPKGAQIMTIHGSKGMQFPYVIVCE-RLGKPNSSHANQFLEEYNGAELARLYY 684

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
            +   +  +   +  +   + +   E   + YV  TRA   LI+       ++K+S  + 
Sbjct: 685 RMKNREVVDKDYARALNKEEAAKDHEEINVYYVAFTRAELGLIVVAKDKKESKKESKNKK 744

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
             + +  +   +  +  +                    P+  PL     IK     +++ 
Sbjct: 745 MREQLDLAPLEEGEIMPV------------------ISPQKEPLIASVVIKPHAYGEQVQ 786

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
           +    P  +                         +D +  N G+ +HK L+       + 
Sbjct: 787 EIEEEPDSDYEK---------------------NNDQEAINFGIALHKGLEY--QYAYNI 823

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EVSVSGKINCPK 859
            K  +  Y   +   +   +++ L  S+     +  +       +   E +         
Sbjct: 824 PKQSVLEYLNYHYGFYGL-DHQALEESLELFENDAEIQALFKNHALKGEAAF-------- 874

Query: 860 KDIIISG---RIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
              +  G   RID +   +   +++ +YK+  +          +H AQ+S Y + L+   
Sbjct: 875 ---LFQGVVSRIDVLLWDRGQNLYVLDYKSSQN-------YQQSHKAQVSHYAEFLRTQA 924

Query: 916 PNKSLVCLLIYVSEPKVFI 934
           P+  +   +IY +  ++  
Sbjct: 925 PHFKIQAGIIY-AHKRLLE 942


>gi|15646160|ref|NP_208344.1| putative recombination protein RecB [Helicobacter pylori 26695]
 gi|2314736|gb|AAD08593.1| helicase [Helicobacter pylori 26695]
          Length = 945

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 127/865 (14%), Positives = 270/865 (31%), Gaps = 169/865 (19%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL    T    +  +   +    LK ++   + E  +I +    Y   K T         
Sbjct: 243 FLNSSLTW---LEKKSEYQSFKKLKSEIPTLESECEEIENDLKRYYEAKETAIFKKF-PK 298

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y+ A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 299 FIQLYDNATSKIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSL 358

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             ++++    ++   G       R++F VGD KQSIY+F G+                 +
Sbjct: 359 NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS-----------FSSLFES 407

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             + F    L  + RS   I+  V+ +F         +       +   ++    G V++
Sbjct: 408 VSKDFYHDNLEFNHRSAPLIINYVNTIFKKAYQNSPTAYLEQKYPKTSQNKHVTDGYVKV 467

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                            +L  ++     N++             
Sbjct: 468 SLVA-------------------------DERELLLDQVLQEAQNLLEH----------R 492

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I+ KDI +L     D   I    +   +  + S   + +        I            
Sbjct: 493 IEPKDITILCATNDDALEIKNYLQERLSAIRPSTESSAKLSQFVESKIIKNALEYALAEE 552

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +LK  L  +  DD   +     + E+                         
Sbjct: 553 PYKPFYKHSVLK--LAGYLHDDAIALAGFNPKKES------------------------- 585

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                       F   ++   +   +                L   +  E          
Sbjct: 586 ---------VAGFVWKVMEQFELYGEPAQSC-----------LELAVGCEDAD-----GF 620

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + +LE          S++    +IMT+H +KG++ P V + +      +  H  ++    
Sbjct: 621 LEKLETKAI-----ASSHSKGAQIMTIHKSKGMQFPYVIVCE-RLGKPNSSHSNQLLEEY 674

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              +   +   +   +  +   +  +   + +   E   + YV  TRA   LI+      
Sbjct: 675 DGTELLRLYYRMKNREVVDKDYARALDKEEAAKDHEEINVYYVAFTRAELGLIVVAKDKK 734

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            ++K+S  +T  + +                      + +  E     P  +P +     
Sbjct: 735 ESKKESKNKTMREKL----------------------DLVPLEEGEIAPVISPQKEPLIT 772

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
             L+      +++                   + + + +     +D +  N G+ +HK L
Sbjct: 773 STLIKPHAYGEQVQ------------------EIEEEPSDYEKNNDQEAINFGIALHKGL 814

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
           +       +  K  +  Y   +   +   +Y+ L  S+     +  +           + 
Sbjct: 815 EY--QYAYNIPKQSVLEYLNYHHGFYGL-DYQALEESLELFENDAEIQALFKN-----LP 866

Query: 851 VSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
           + G+     + ++   RID +   +   +++ +YK+  +          +H AQ+S Y +
Sbjct: 867 LKGEAAFLFQGVV--SRIDVLLWDRGQNLYVLDYKSSQN-------YQQSHKAQVSHYAE 917

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFI 934
            LK   P+  +   +IY +  ++  
Sbjct: 918 FLKTQAPHFKIQAGIIY-AHKRLLE 941


>gi|89098260|ref|ZP_01171145.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           NRRL B-14911]
 gi|89087117|gb|EAR66233.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp.
           NRRL B-14911]
          Length = 686

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 96/570 (16%), Positives = 180/570 (31%), Gaps = 107/570 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            K +   YE  K+   + D++DLI+    L +       I  K  ++  +IL DE QD+S
Sbjct: 200 LKEIYTQYEAIKENENLYDYDDLIVECYWLFRFNPD---ILKKYQKQFQYILCDEFQDSS 256

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ+E+IR L E              L  VGD+ QSIY F G  P  ++           
Sbjct: 257 KIQYEIIRMLAE----------PNNNLCLVGDDSQSIYGFRGGTPSFLIFFDIYYPN--- 303

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I + +++RS   ++ + D + S  E              +   +  +    +
Sbjct: 304 -----CRKILMDINYRSGQGVIGLADSIISHNEKQIKKKMRVVKVENNFDVQFSKPINSE 358

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                               A  I   I                
Sbjct: 359 ----------------------------------QEADWIVEDIKEKQAAGMPL------ 378

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               ++I VL R       +    R L +D      G     +  H  I+ L++L R   
Sbjct: 379 ----REIAVLYRTHAVGRAVFE--RLLLSDVPFVTFGGSSETIYSHSVIRPLLSLLRVAT 432

Query: 430 SQEDDLSFVCMLKSPLFNFSED---DIFKICTQRHETETVYEYIQKFANCGISK-----F 481
           +  D  +   +  +P+   S     +  +     +  ET  +   +  N   +K      
Sbjct: 433 NLMDSEAI--VDAAPILYISRREMEETVEEVVSANNGETPKDLFIQVINKIANKKNGFQQ 490

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           +H++  +  +  +++  +P     +  G     +Q        +    +  +      EQ
Sbjct: 491 RHLLTKLECIKGLSKMTAPQAIRDIRKGTINYERQLELDERKTLTLHKEMLIELLEECEQ 550

Query: 542 --NSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               + S++  +S +E+     +         +   VR+MT+H++KGLE  VV+ +    
Sbjct: 551 ASRGFQSIKAFLSFVERVEEKNEEMEELRSQPDIEAVRLMTIHSSKGLEFEVVYAIGMIE 610

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
           ++  H      +     N  P   +   +                           YV +
Sbjct: 611 KILPHSIALDTNRKEDTNLSPEESLEEERRL------------------------AYVCI 646

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
           TR    L +        EK    R   + +
Sbjct: 647 TRVKKCLYLSAPKTYRGEKAKVSRFLLEGL 676


>gi|313207052|ref|YP_004046229.1| uvrd/rep helicase [Riemerella anatipestifer DSM 15868]
 gi|312446368|gb|ADQ82723.1| UvrD/REP helicase [Riemerella anatipestifer DSM 15868]
 gi|315022554|gb|EFT35581.1| ATP-dependent helicase [Riemerella anatipestifer RA-YM]
 gi|325335511|gb|ADZ11785.1| UvrD/REP helicase [Riemerella anatipestifer RA-GD]
          Length = 1044

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 139/924 (15%), Positives = 285/924 (30%), Gaps = 123/924 (13%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+ +     NE+ +   K    L      +I  +   +         +  +         
Sbjct: 222  LRTQLTQHHNEALQ-YAKKALALISENNLEIKDFQGGASSGLGKFFEEALKFYTGQRDKF 280

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                        F     +    II          + + L + +   I            
Sbjct: 281  PFPSDEEKALERFRKGTASKDNTIINAIF-----SILDTLIEWRTLIITNYVTSEKKAKI 335

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR---DVSAWIRYKIDQEI 177
               L  L + K +    E  + ++ ++    L+   N L+K+    + SA+I  KI    
Sbjct: 336  LKELLPLKINKEIREQLEIIEDEDDLV----LLSKFNILIKENLREEPSAFIYEKIGTRY 391

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             H   DE QDTS +QWE I  L +     ++      +   VGD KQSIY F G + +++
Sbjct: 392  QHYFFDEFQDTSKLQWENIIPLRDHTISSEDH-----SFTLVGDPKQSIYRFRGGDAEQM 446

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L             G   ++  L  ++RS  +I+   +++++                 H
Sbjct: 447  L----DIINGKEATGVNINLENLENNWRSAQNIVRFNNELYA-------FMAKDLEQEEH 495

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            R     Q   +   E ++ +              +FD +         A ++   I   +
Sbjct: 496  RHLFAEQGQQIAKREDLLGRVRVNLVEYDRKDEVFFDEV---------ANQMFEDIKTCL 546

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK-----ISVVGNDRFIL 412
                          Q  DI ++ R + +   ++     LK +YK     I  +      L
Sbjct: 547  NNG----------FQFSDICIMCRTKGEIKQLSQRLGLLKVNYKNTETYIKTISEKGLSL 596

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                 +   +   ++     +  S +  L            + + +       ++     
Sbjct: 597  DLSKTLLATIEYLKWENDTANYDSLMRAL------------YHLNSLGRININLF----S 640

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLD 530
                 + + +     + EL +       H  +   L      +  + +F    +  D + 
Sbjct: 641  EEITSLLELKTSDAILEELNNRYGIGLNHQHYLH-LNLYNRIEYLVKQFAVPQQETDFIL 699

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             FL       QN   +L++ I   ++         S N + +++MT+H  KGLE PVVFL
Sbjct: 700  NFLEEVYAFTQNPGKTLKDFIKYWDEEASEKSIQSSENIDAIKMMTIHATKGLEYPVVFL 759

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                S   S  +      + +L                + +     +      + +   +
Sbjct: 760  PMKNSHKDSSFNDWLSVDLENLKSVNLSQFKKELLVYDDTL-KSFSEENTYKNKIDRYCV 818

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             YV  TR  +QL +  +    ++   N+    D V      +++                
Sbjct: 819  QYVATTRPVEQLFL--YLQKPSQSGENKLEILDFVQQFNATEQQF--------------- 861

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                   +PE     +++  K+ + E        +P     +   I  PS          
Sbjct: 862  -----DLYPEENNSYQKQNRKKKLTEINKQSVEITPNTCISSSIQIATPSKNYQ------ 910

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                  N+    G+  H++L  I    ++     ++SY      +   +E   +  +I  
Sbjct: 911  ----ERNEKVRTGIFTHEILSKI--KTKNDIMPVLSSYL--IDGIITKQEKAEIEKTILS 962

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
            ++E+   +         EV          +      R D++       +I ++KT     
Sbjct: 963  VVEHHSYSFYFEEIE--EVYNERDFMLNGEIF----RPDRVVKKNGGYYILDFKTGAPN- 1015

Query: 891  QEIEHIPYTHIAQLSIYEKILKDS 914
                     H  Q+  Y+  L+  
Sbjct: 1016 -------DKHQNQILAYKIALEQL 1032


>gi|253576278|ref|ZP_04853609.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844405|gb|EES72422.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 732

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 102/709 (14%), Positives = 219/709 (30%), Gaps = 120/709 (16%)

Query: 24  PYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKN 83
           P     D +   SL+ E           + Q         ++ +  S      K    +N
Sbjct: 88  PELTPVDFSTIHSLAFEVVREHFRATQTSFQIIEGDVDAAQQEASGSEQLPLHKKIILRN 147

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK- 142
           +      +   D  ++L +       I+++    + + +    +  A+ +   YE  K+ 
Sbjct: 148 LYKAITGENITD--DQLDELTTYISYIKNKMIPSEQWSAVKVEVPHAERILREYELFKQS 205

Query: 143 --KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
             ++ +LD++D+++    +L + +    +  +  +  +++L DE QDTS +Q  +I  L 
Sbjct: 206 GTRSLLLDYDDMLVVCERILAENEG---VLRRYQRRYDYVLTDESQDTSRVQHAIIEKLV 262

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           +            R L  V D+ QS+YS+ GA+P  +L  K++  +          I+ +
Sbjct: 263 QQ----------HRNLCVVADDDQSLYSWRGADPAYLLNFKQVYPEAL--------ILFM 304

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST +I+ V + +    ++       +     H+                      
Sbjct: 305 EQNYRSTPEIVNVANTLIQRNQDRYPKKMFTENP-PHKPI-------------------- 343

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
               +      Y D +          + +   I  +                  ++ +L 
Sbjct: 344 ----EIRHLDDYSDQV----------KYLVNEIQQIKN--------------FAEVAILY 375

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           R    +           +   I     D       H  ++D++   R   + +       
Sbjct: 376 RNNSSSI----ALMNEFDRAGIPFYMKDADNRFFSHWVVEDILNFMRMTFTDKRPDILEK 431

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +        S++ +  +   R+E E+V++ +         + +  ++   E     +   
Sbjct: 432 IHLKFNGYISKEQMAALLKIRNE-ESVFDNLLNRVPLKDYQVKQ-LQMCKETFQEMKGMP 489

Query: 500 PHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-Q 556
           P     +I       +       +    ++ L   LN          ++++E  + L+  
Sbjct: 490 PLHAIRVIRDRLGYEKALEKICEWKGFRMEYLLGILNTLEEI-AAELATMEEFAARLKYL 548

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        N V   T+H++KGLE   V+++D    +   K               
Sbjct: 549 ESILRTARTKRGQNAVTFSTMHSSKGLEFERVYMIDLVEGIIPSK--------------- 593

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                       EE  RL YVGMTRA   L +  +      + +
Sbjct: 594 -------------------ADKENTDMMEEATRLFYVGMTRAKKHLELLTYKKRDGAEVT 634

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
             R    + Y              + SI               E    E
Sbjct: 635 ESRFVAYVRYIQLPPQAGEPSSATSPSIPVPAQDNPNAIRRLAELREGE 683


>gi|47459326|ref|YP_016188.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K]
 gi|47458656|gb|AAT27977.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K]
          Length = 742

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/587 (14%), Positives = 181/587 (30%), Gaps = 121/587 (20%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           ++    + L       YE+  +KN  +D+EDL+  T +LL +      IR K  Q  ++I
Sbjct: 181 EAKNDLIKLKAEFYMSYEKYLEKNKSIDYEDLVTKTFELLSEFPE---IRKKWSQYFSYI 237

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           LIDE QD    ++E+++ +                +  VGD  Q+I+S    + K + + 
Sbjct: 238 LIDEFQDLGFQEYEILKKIA-----------MKTPIMIVGDTNQTIFSPKYTDVKYMSKF 286

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                           I  L  ++RS   I+  V+ +      +                
Sbjct: 287 HEDFPN--------VQIFHLNKNYRSNKSIIEAVNNLMKKNNTSFE-------------- 324

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        +          ++  +   F +  +       AR + + I+ +    
Sbjct: 325 -----------SSIKEMEAQNLEEEKIVYQQAFSTDAE-------ARWVVHKINKLKRN- 365

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +Q KDI +  R    T              +I+    D     +   IKD
Sbjct: 366 ---------KVQLKDIAIFYRSSFYTKSFEDELE----KAEINFQILDDNKFYERDEIKD 412

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSED-DIFKICTQRHETETVYEYIQKFANCGIS 479
            ++  R +       +F+ +L  P  + S   +   +       E +Y+ +         
Sbjct: 413 CISFLRVLHD-GSSTTFLRILNVPNRDVSVTFEKKLLEYAESRNENIYDALINLFKDTKK 471

Query: 480 K-------------------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +                     ++I    +  +  +    +      L   K        
Sbjct: 472 EVTSKMKLQWNTKNKTILLNLVNLINSFRKYRNALKKYPIYKSLHGFLEEVKYYDYLKDD 531

Query: 521 F-GNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
             G++    + E LN     E  +   +L + + E+       K     + N V +++  
Sbjct: 532 DAGSDKEKNILELLNSIKIWENANRNKNLADYLEEISLISSKYKSPL--SKNSVSLISAI 589

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG +   VF+V     ++ +                               + +L K 
Sbjct: 590 HSKGTQFKNVFIVGLSEYIWPNIKS----------------------------IEELEKT 621

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                 +   RL Y+ +TRA D++ +       N     +++    +
Sbjct: 622 GSSDLIDNERRLFYIALTRAVDRIFLSDSQGFFNSDLKYKKSPSRFL 668


>gi|218848008|ref|YP_002454758.1| helicase, UvrD/Rep family [Bacillus cereus G9842]
 gi|218546139|gb|ACK98532.1| helicase, UvrD/Rep family [Bacillus cereus G9842]
          Length = 666

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/501 (16%), Positives = 174/501 (34%), Gaps = 85/501 (16%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              + + A YE+ K++  ++DF+D+++   DLL        +R  I ++I +IL+DE QD
Sbjct: 215 RELRDIYAMYEQWKEQQNMIDFDDILVIMYDLLTTN---FKLRELIQEKIKYILVDEFQD 271

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           +S IQ+ +++ +                L  VGD+ QSIY+F GA P  +L       K 
Sbjct: 272 SSSIQYAILQIIAA----------PHNNLTIVGDDWQSIYAFRGANPGIILNFPNDYSK- 320

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RS   I+ + + +    +     + ++      +         
Sbjct: 321 -------VKKVILDTNYRSNPYIVGLGNSIIKQNKKQFDKTLNTNKDSGSKPK------- 366

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                + S  DS          A  I   I   I          
Sbjct: 367 ---------------------YFSPDDS-------KQEATMIINDIIGQIKGGNK----- 393

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 +D  +L R    +     L   L       V    + +  ++  +K ++ + + 
Sbjct: 394 ----NYRDFSILYRTHAVSR---SLIEQLVIKEIPFVQYKTKDLFYNNSNVKPIINVLKL 446

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV---------YEYIQKFANCGI 478
            +  + D   +  +  P+    +D +       +  + +         Y    +  +   
Sbjct: 447 AIRPKTDFESLKGVC-PMLYIGKDKVIDSIINAYALDDLEGQTKPLISYLLKCQLTHNQN 505

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR----QQFISRFGNEVIDVLDEFLN 534
            +   + K I E   ++   +        L  ++      ++ ++     +++ LDE   
Sbjct: 506 KRVMQLYKTIKECRGMSAIEAIQCIRYGHLQYEQYLLDNKRKNMTTHKEMMLEELDELET 565

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                  ++   L + I +LE     +K      N N + +MT+H +KGLE   V+++  
Sbjct: 566 SAKGF--STIKELIDFIEKLETQYEKMKELQKEQNVNAISLMTIHGSKGLEFKHVYIIGA 623

Query: 594 GSQVFSHKHIKKMHIMPSLND 614
                 HK   ++     ++ 
Sbjct: 624 SEGTLPHKSSLEITDDRVIDG 644


>gi|16263702|ref|NP_436495.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021]
 gi|14524418|gb|AAK65907.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021]
          Length = 689

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 113/747 (15%), Positives = 207/747 (27%), Gaps = 145/747 (19%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    ++   E I   +       ++D   +       G   +   A+   L       
Sbjct: 71  RRAAAEMSRRVERICAQVLGRSSGMMTDALSWAGTFHGIGARLLRIYAEQIGLNAEFTIH 130

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPD--------LKEKLKKSQDEFIKIR 111
             E+   L++       F+  +    T+                L E L+          
Sbjct: 131 DREDSADLINLIRHELGFSKTESRFPTKGTCLAIYSRTVNAEMRLNEVLRSWYPWVAGWE 190

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            +                 + L A Y EAK+   VLD++DL++    ++    ++  I  
Sbjct: 191 QQL----------------QELFAGYVEAKQAQNVLDYDDLLLYWAQMVSDASLADDI-- 232

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                 +++L+DE QDT+ +Q  V+ +L              R L  VGD+ QSIYSF  
Sbjct: 233 --GNRFDYVLVDEYQDTNKLQSSVLLAL----------KPDGRGLTVVGDDAQSIYSFRA 280

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L   +              I+ L  ++RST  IL   + V  +       +  +
Sbjct: 281 ATVRNILDFPKQFA-------PAAEIVTLDRNYRSTQPILAAANGVIDLARERFTKNLWT 333

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                 R                                     L      +  A  I  
Sbjct: 334 DRESAERP-----------------------------------KLLTVKDEADQANCIVE 358

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +     +  +           K   VL R    +  +            I  V      
Sbjct: 359 QVLANRESGMLL----------KQQAVLFRTSSHSGPLEVEL----TRRNIPFVKFGGLK 404

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEY 469
             D   +KD++A+ RF  +  D ++   +L+  L         KI           +   
Sbjct: 405 FLDSAHVKDMLAVLRFAQNPRDRVAGFRLLQ-MLPGVGPQTAGKILDTIAADPEPLMALG 463

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                    + +  +++ +  L               +       +  I          L
Sbjct: 464 EVPAPPRSGTDWMSLVELLQALRKPGSAWPTEIEMARMWYEPHLER--IHEDAETRRADL 521

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLES 585
            +              S +  ++EL   PP      +     + + + + T+H+AKG E 
Sbjct: 522 VQLEQIAAGY-----PSRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEW 576

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+++                                           +        E
Sbjct: 577 RSVFMLNVVDGCIPSD----------------------------------LATGTSHELE 602

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RLLYVGMTRA DQL +          +  Q   +     +      + +   + +  
Sbjct: 603 EERRLLYVGMTRAKDQLALMVPQRFFTGGQHAQGDRHVYASRTRFIPATLLQFFESANWP 662

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQ 732
                  E S          R  T+ +
Sbjct: 663 VASPNVSERSAKQIRIDVAARMRTMWR 689


>gi|124514998|gb|EAY56509.1| putative ATP-dependent DNA helicase, UvrD/REP family
           [Leptospirillum rubarum]
          Length = 746

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 116/785 (14%), Positives = 209/785 (26%), Gaps = 147/785 (18%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
           ++   +   +  L                        ++    ++ +     ++    + 
Sbjct: 61  KAARELLHRISRLRPSSRPSWVGTFHSVAARMLRQQAERLDLPREFTIVDGPDQL--QMI 118

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              L ++    K +  +++  +    K       +               ++T     + 
Sbjct: 119 RDLLGRQGVSDKEVDPKKLAGRIGKWKSAGVDPVEAI-------------RTTFGPFRVQ 165

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L A Y++       LDF+DL++     L++      +R    ++  HIL+DE QDT+ 
Sbjct: 166 AELYAAYQDNLALQKALDFDDLLLTLVRCLEQDPE---VRETYQRQFEHILVDEYQDTNP 222

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q            + +      + +  VGD+ QSIY F GAE   +L   +        
Sbjct: 223 LQE----------RLLRLLSRDRQNVTVVGDDDQSIYRFRGAEVGHILSFPKEYP----- 267

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L +++RST  I+T    + S           ST          G+ G    
Sbjct: 268 ---GARQVVLTVNYRSTRPIVTAASSMISSALARYRKDMVST----------GRPGEPVF 314

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            +++                          S    AR +A TI   +    +        
Sbjct: 315 LKKL-------------------------DSEWAEARFVARTIQEKVERGAM-------- 341

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFIL 429
              +D +VL R                    I            +   I+DL+A  R   
Sbjct: 342 --FRDQVVLFRMNVQAQPFIRAFAE----AGIPFQTRGAVQGFFNRREIRDLLAYLRVSA 395

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-----TETVYEYIQKFANCGISKFQHV 484
           +  D +S   +L  P     E    ++  Q         E +     + +       +  
Sbjct: 396 NPFDRISLGRILNVPPRGMGEKARERLDQQAGNPGLSSWELLERLSLELSGKARESARAF 455

Query: 485 IKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQF----ISRFGNEVIDVLDEFLNFTLRN 539
              + E     +    P       L      Q          G    + L E L  + R 
Sbjct: 456 ANDLEEASRRVRRGDGPFSLLQFWLSRTGYEQWVSEGESGEEGPGREENLKELLRMSERF 515

Query: 540 -----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E    +     + EL             + + V ++T+H AKGLE P V+L    
Sbjct: 516 GDGIGELTDRTPTGVFLEELAL-SQEDPGEAGESPDRVSLLTIHQAKGLEFPHVYLAGAE 574

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +   K   K+ +                                    EE  RL YV 
Sbjct: 575 EDILPMKSRDKVDV------------------------------------EEERRLFYVA 598

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA D L I          ++        + D      +  +             +   
Sbjct: 599 MTRARDSLAITWCLTRQLFGRTESPRPSRFLRDIPPEAVQGDRPVFRPETPVSRQTSELP 658

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                    L        L            P K       +L P  I            
Sbjct: 659 PRKVFPPPSLAPSRPATSLRSV---------PEKRTSPPTEVLRPEWIGKTVVHPRFGRG 709

Query: 775 SDNQT 779
              + 
Sbjct: 710 RVEEA 714


>gi|119953412|ref|YP_945621.1| exodeoxyribonuclease V beta chain [Borrelia turicatae 91E135]
 gi|119862183|gb|AAX17951.1| exodeoxyribonuclease V beta chain [Borrelia turicatae 91E135]
          Length = 1147

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 142/874 (16%), Positives = 285/874 (32%), Gaps = 112/874 (12%)

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
            +  K   ++  L++   +    ++  NT K F +      + KY+             +D
Sbjct: 270  LLPKELKIQTALRELSHKTNTNKEDKNTLKRFINLKIEYKILKYIEKELANIINATNTID 329

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
             + +++N    L+ RD    +   I      ILIDE QD +LIQ E+ + L         
Sbjct: 330  QKHIMLNFKKHLESRD--NKLLNSIKNRYKIILIDEAQDLNLIQIEIFKLL--------- 378

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
             +S    L  + D KQ IY+F  A+            +   +  +  + I L  ++RS  
Sbjct: 379  -NSCGIKLIFIADPKQIIYTFRNADIS-------YYNQGIKDQIKDNAKITLLTNYRSNK 430

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
             ++  ++ +F                  +  +   ++  ++  +      + +       
Sbjct: 431  KLVEPLNIMFDNI---------------YNKTHTAKIEQIEFTKSKTESKNDENKIFIND 475

Query: 329  -WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                  + +  ES    + ++ A TI  ++    I+ N K R I+  DI VL R  K+  
Sbjct: 476  QEIEAINIIETESEDENILQKTAITIKYLLTNGKIYDNNKLRQIKESDIKVLCRTSKEID 535

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            LI    +    +  I     +           ++  L +    +++  +   +L S + N
Sbjct: 536  LIDKELK----NQNIKTNKIE-ESFFKTKEFSEIFYLIKCFDRKQNFQTLNYILTSKIIN 590

Query: 448  FSED---DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE---LIHIAQFCSPH 501
               +    + +    +H    + + I    N  I+  + + + I +    +++A+F +  
Sbjct: 591  LPWELYLSLLEKNEIKHIEAAISDIIYLLENQEITLIKAIDEIISKKDLWLNLAKFFNNT 650

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR--NEQNSYSSLQELISELEQYPP 559
             F       K  R+  I+    E +   +  L+F  +   E  +  SL   + +L     
Sbjct: 651  TFTEFAQSKKSYRETLINEKKFEELKNYEISLDFISKIYYEDKTIESLICTLEDLILNKD 710

Query: 560  TIKRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
            T +            + I+T+H +KGL   +VFL+       +                 
Sbjct: 711  TEQDEEQITTQGDQSIEILTIHKSKGLSINIVFLIGDIQHNDNLMKKSDTFY-------- 762

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                   + K     + +  +  K     E   + YVG TR+   L I       N+   
Sbjct: 763  -KFCLENRIKYDFLKLKENQQSAKHKILNEEKNIFYVGTTRSRFALFIINKGTIINKMLD 821

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
              +       +   N   + K    N + K++    +     P N  L R E        
Sbjct: 822  LAKIKTIDKINLDFNVYNLIKTHKFNKLEKNDNKEIKLIPPTPINKHLFRREYTHSYTSL 881

Query: 737  QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
                K  +   +   ++         D       E+L    +  + G I+H +++ I   
Sbjct: 882  ASSYKSTYHANQETRDDETY------DNDANCTEETL---PKGKDIGNILHVIMKDINFS 932

Query: 797  PEHKRKNFIT---------SYCTKNAKLWPAKEYKNLLLSITRLLE------NPMMTTAM 841
                  N                 N+KL   K  + L+  I  +L       +  +    
Sbjct: 933  DAKDDFNNFQKINIALIQKRIEHFNSKLNTPKIQEMLIKMIYNILNTKIRFIDARLCDI- 991

Query: 842  SCDSYSEVSVSGKINCPK-----------------KDIIISGRIDQISISQQNIFIFEYK 884
              +   E+    KI+                     +  I G ID I      ++I +YK
Sbjct: 992  -QELQKEMEFLIKIDTKIYEQKSLFKNYNKLDLTFNEGYIKGIIDLIFKINNKVYILDYK 1050

Query: 885  THHHVPQEIEHI---------PYTHIAQLSIYEK 909
            T++      ++             +  Q  IY  
Sbjct: 1051 TNYLGANLKDYNLTNLKKKMKQEKYDLQYKIYAL 1084


>gi|251771257|gb|EES51838.1| UvrD/REP helicase [Leptospirillum ferrodiazotrophum]
          Length = 647

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/579 (16%), Positives = 175/579 (30%), Gaps = 120/579 (20%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
             +            + +   Y E K    VLDF+DL++    LL++   +A +   +  
Sbjct: 161 IRRRAPWLGHLEKTIEAIARRYREEKAAQRVLDFDDLLVLWLRLLEESPETAEL---LRD 217

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
              H+L+DE QDT+ +Q +++  L            S + LF VGD+ QSIYSF GA   
Sbjct: 218 RFRHVLVDEYQDTNPLQGKILDLLVA----------SHKNLFVVGDDSQSIYSFRGAAID 267

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +L  +    +          +  L  ++RST +IL+V +++          +  S    
Sbjct: 268 NILSFQERYPEAG--------VYRLEKNYRSTPNILSVANRIIEQNSRQIPKTLYSPLPE 319

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                       V+++                             S    AR I   I  
Sbjct: 320 ------ADHPTLVRMY-----------------------------SDQDQARYITTRIRR 344

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            +              +  +I VL R       ++   +   +   I           + 
Sbjct: 345 ALDRGQ----------EPSEIAVLYRAH----YVSLSLQLSLSRAGIPFHLTSGLKFFEQ 390

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKS-PLFNF----SEDDIFKICTQRHETETVYEYI 470
             IKD+++  R + +  D +++  +L+  P          + +        +      ++
Sbjct: 391 AHIKDILSWLRLLENDRDAMAWRRILRMVPRVGRKTAEKIEALLSRAEAPRKALGDPAFL 450

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCS--PHDFFTLILGAKKGRQQFISRFGNEVIDV 528
           +            + +   +L    +       D    IL        + +    E  + 
Sbjct: 451 KAAPASARPGIAGIAERFSQLAERREKNPRDVMDLVGTILATGYHDYLYETFEDPESRE- 509

Query: 529 LDEFLNFTLRNEQNSYS--SLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLES 585
                   L           L + ++EL        + +     N V + TVH AKGLE 
Sbjct: 510 -----EDILSFAAQIPPETDLADFMAELALLEAGGEELSQEEQKNRVVLSTVHQAKGLEW 564

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V+L+     VF                                              E
Sbjct: 565 DTVYLLSLAEGVFPSS----------------------------------RSAETDEEIE 590

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
           E  RL YV +TRA   L++C          S       +
Sbjct: 591 EERRLFYVAVTRARHDLVLCVPQVVGRGFGSPAPPSRFL 629


>gi|258654033|ref|YP_003203189.1| exodeoxyribonuclease V subunit beta [Nakamurella multipartita DSM
            44233]
 gi|258557258|gb|ACV80200.1| exodeoxyribonuclease V, beta subunit [Nakamurella multipartita DSM
            44233]
          Length = 1139

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 117/1018 (11%), Positives = 250/1018 (24%), Gaps = 204/1018 (20%)

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
            L  A       E    L    +            +       D    L  ++      + 
Sbjct: 147  LGVAGDADPDVELVDTLDDLIVQVVDDLYIAAFARRDLPPVFDRDTALALARRVVDDPQA 206

Query: 113  RFNTYKMFKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
                      + A+  +   + +    EE K++  +L ++DL+      L   D  A  R
Sbjct: 207  LLAPPDPDPISPANWRIKFGQRVRREVEERKRQRRILGYDDLLGRLATALAPADAPA--R 264

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             ++ +  + +L+DE QDT  +QW+++              S   T+  +GD KQSIY+F 
Sbjct: 265  ERMRRRWSFVLVDEFQDTDPVQWQILDR----------AFSGHATMVLIGDPKQSIYAFR 314

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            G +    L                 +   L  ++R+   ++T +  +    E   G  E 
Sbjct: 315  GGDVPTYLAA---------AHTAGPARATLDRNWRTDPPLVTALQVLLH--ELTLGSPEI 363

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                +          G        +                  D      +  ++AR +A
Sbjct: 364  VVRPVVSALPGPRLHGAPSAAPLRLRVLRRDQVNCGAGELIPIDR-----ARELIARDLA 418

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
              ++ ++G    F     + +QA  + V+V   K    +            I  V     
Sbjct: 419  ADLAELLGAGATFD---HKPLQAGHVAVIVGTHKQARTVQTAL----IRVGIPAVVAGSS 471

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
             +    A    + L   +              +    +S  D+     +  +  +V    
Sbjct: 472  SVFQTEAADQWVTLLEALEQPHRAARVRAAALTAFVGWSAADLAARGEEATDELSV---- 527

Query: 471  QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV----I 526
                             I     +           ++        + + R G E     +
Sbjct: 528  ----------------LISGWAGVLATRGVAALLEVVGVETGLPARVLGRVGGERLLTDL 571

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYP-----PTIKRAHSANHNEVRIMTVHTAK 581
              + + L      +    ++L E +                R    +    +++T+H +K
Sbjct: 572  RHVGQLLQTAAVQDSLGVAALAEWLRRRRADDRLDVTADRVRRLETDAAACQVVTLHASK 631

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ PVV+L       F+            L    G  +                     
Sbjct: 632  GLQYPVVYLP------FAFDRWYNDEPDVLLLHQDGHRVLDIGGPDTPGRGRR-RDQALA 684

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  R LYVG+TRA  Q+ +   + T N + S          D         K+   
Sbjct: 685  EEAGEALRHLYVGLTRAQSQV-VTWWAPTKNTRTSGLHRVLFGDRDFDGGVPDSVKVPSD 743

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN--- 758
             +         +      E   +                         ++     ++   
Sbjct: 744  EAARTRLDGWQQRGALVLEQVGVSAARPPAADAPRPDELAVAVLHRDLELQRWRRVSYSS 803

Query: 759  ------------------PSTIDTKGKTNLESLLSD------------------------ 776
                                 +    +     L  +                        
Sbjct: 804  LSAAGSSGLLIGADAGPVAGDLGVGSEPEHPELADEDGALAAPAGAPDPVADPMAALRAT 863

Query: 777  -------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                         G ++H + +                   + A++    +   L  ++ 
Sbjct: 864  LSPMADLPVGATFGTLVHAVFETTDPRAADLPAQVRARCAEQVARVGFPLDPDTLAAALV 923

Query: 830  RLLENPM--------MTTAMSCDSYSEVSVSGKINCPKK--------------------- 860
             +L   +        +    + D  +E+     +    +                     
Sbjct: 924  PVLRTSLGPLAGGLTLADLGTRDRLTELEFELPLAGGDRAAGPVPDLVLGDLAPVIRRHL 983

Query: 861  -----------------------DIIISGRIDQISISQQ-NIFIFEYKTH---------- 886
                                      ++G +D +         + +YKT+          
Sbjct: 984  PAADPLAGYADRLAAPSFAELPLRGYLTGSLDAVLRLPGPRYLVADYKTNWLGDFDSGAP 1043

Query: 887  ------HHVPQEIEHIPYTHIAQLSIYEKILKDS--------YPNKSLVCLLI-YVSE 929
                       +       +  Q  +Y   L           +P + +  +L  +V  
Sbjct: 1044 LSLWDYRPAAMDAAMAGSDYPLQAMLYTVALHRFLRWRQPGYHPGRHIAGVLYLFVRG 1101


>gi|260206547|ref|ZP_05774038.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289575917|ref|ZP_06456144.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
 gi|289540348|gb|EFD44926.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85]
          Length = 1055

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/996 (11%), Positives = 259/996 (26%), Gaps = 180/996 (18%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS--------FFL 74
               +   +    S +         +    L +   +   +     L +           
Sbjct: 83  RAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGPAATT 142

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T     +  + T     +  +L  +  +       +          +        A    
Sbjct: 143 TWPAHLRPALTTAGFATELRNLLARCAE-----RGLDPLELQQLGRRRGRPEWIAAGQFA 197

Query: 135 AHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             YE+                   L   +L+    +      V   +       +  +L+
Sbjct: 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFA---VDPELLAAERARVRTLLV 254

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           D+ Q        ++R L     +              GD  Q+++ F G EP  +L    
Sbjct: 255 DDAQQLDPQAARLVRMLAAGTELA----------LIAGDPNQAVFGFRGGEPTGLLA--- 301

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                    G     + L +S R    +   V  +               T     S  +
Sbjct: 302 --DDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTV 359

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              G+                                      A   A  I++ +    +
Sbjct: 360 RLAGS--------------------------------------AHAEAAMIADALRRAHL 381

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   +    + V+VR       +               VG     L+   A++ L+
Sbjct: 382 ID-----GVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGG---PLSAEPAVRALL 433

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT----------QRHETETVYEYIQK 472
            +        D    + +L  P+       + ++             R   + + E +  
Sbjct: 434 TVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGG 493

Query: 473 FANCGIS---KFQHVIKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGN- 523
            A          + V   +       +  S     P             ++++++   + 
Sbjct: 494 DAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHG 553

Query: 524 -----EVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVR 573
                +    L+      + T     + S +SL+ L+  +       ++   +A   +V 
Sbjct: 554 GAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVM 613

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +++ H A G E  +V +      ++ +   +   +      D    +    S        
Sbjct: 614 VLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASM------- 666

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----SNQRTWYDMVYDSF 689
                 +     E  RLL   M RA  +L++    + +             ++++   + 
Sbjct: 667 ------RAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720

Query: 690 HNDERVKKIKLTNS--------------INKDEWIAYEWSTHHPENTPLEREETI----K 731
            + E V    ++                +      A + +      T L R         
Sbjct: 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF-------NRGL 784
              +   +     S    D ++   L PST+       L  L   +            G 
Sbjct: 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840

Query: 785 IIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
           ++H L                  +      A+ + A E       I   ++      A S
Sbjct: 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQ----WRAQS 896

Query: 843 CDSYSEVSVSGKINCPKKD-------IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIE 894
               +EV V   I+   +D       I + GR D++       + I + KT      + +
Sbjct: 897 RSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDD 956

Query: 895 HIPYTHIAQLSIYEKILKD---SYPNKSLVCLLIYV 927
                  AQL++Y+  + +      ++     L+YV
Sbjct: 957 AQQ---HAQLAMYQLAVAEGLVRAGDEPGGARLVYV 989


>gi|15610338|ref|NP_217718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv]
 gi|15842788|ref|NP_337825.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551]
 gi|148663061|ref|YP_001284584.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148824398|ref|YP_001289152.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis F11]
 gi|167968317|ref|ZP_02550594.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           H37Ra]
 gi|253800238|ref|YP_003033239.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|254233813|ref|ZP_04927138.1| hypothetical protein TBCG_03137 [Mycobacterium tuberculosis C]
 gi|254365825|ref|ZP_04981870.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254552299|ref|ZP_05142746.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|297635849|ref|ZP_06953629.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
 gi|297732845|ref|ZP_06961963.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN R506]
 gi|306777524|ref|ZP_07415861.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|306786069|ref|ZP_07424391.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|306790436|ref|ZP_07428758.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|306794957|ref|ZP_07433259.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|306805002|ref|ZP_07441670.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu008]
 gi|306969292|ref|ZP_07481953.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
 gi|306973643|ref|ZP_07486304.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|307081352|ref|ZP_07490522.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
 gi|313660178|ref|ZP_07817058.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN V2475]
 gi|3242281|emb|CAA16669.1| POSSIBLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis
           H37Rv]
 gi|13883114|gb|AAK47639.1| helicase, UvrD/Rep family [Mycobacterium tuberculosis CDC1551]
 gi|124599342|gb|EAY58446.1| hypothetical protein TBCG_03137 [Mycobacterium tuberculosis C]
 gi|134151338|gb|EBA43383.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148507213|gb|ABQ75022.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra]
 gi|148722925|gb|ABR07550.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           F11]
 gi|253321741|gb|ACT26344.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435]
 gi|308214072|gb|EFO73471.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001]
 gi|308329222|gb|EFP18073.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003]
 gi|308333054|gb|EFP21905.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004]
 gi|308336740|gb|EFP25591.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005]
 gi|308348311|gb|EFP37162.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu008]
 gi|308353145|gb|EFP41996.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009]
 gi|308356887|gb|EFP45738.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010]
 gi|308360887|gb|EFP49738.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011]
 gi|323718066|gb|EGB27248.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551A]
 gi|328459973|gb|AEB05396.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207]
          Length = 1055

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/996 (11%), Positives = 259/996 (26%), Gaps = 180/996 (18%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS--------FFL 74
               +   +    S +         +    L +   +   +     L +           
Sbjct: 83  RAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGPAATT 142

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T     +  + T     +  +L  +  +       +          +        A    
Sbjct: 143 TWPAHLRPALTTAGFATELRNLLARCAE-----RGLDPLELQQLGRRRGRPEWIAAGQFA 197

Query: 135 AHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             YE+                   L   +L+    +      V   +       +  +L+
Sbjct: 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFA---VDPELLAAERARVRTLLV 254

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           D+ Q        ++R L     +              GD  Q+++ F G EP  +L    
Sbjct: 255 DDAQQLDPQAARLVRMLAAGTELA----------LIAGDPNQAVFGFRGGEPTGLLA--- 301

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                    G     + L +S R    +   V  +               T     S  +
Sbjct: 302 --DDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTV 359

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              G+                                      A   A  I++ +    +
Sbjct: 360 RLAGS--------------------------------------AHAEAAMIADALRRAHL 381

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   +    + V+VR       +               VG     L+   A++ L+
Sbjct: 382 ID-----GVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGG---PLSAEPAVRALL 433

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT----------QRHETETVYEYIQK 472
            +        D    + +L  P+       + ++             R   + + E +  
Sbjct: 434 TVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGG 493

Query: 473 FANCGIS---KFQHVIKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGN- 523
            A          + V   +       +  S     P             ++++++   + 
Sbjct: 494 DAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHG 553

Query: 524 -----EVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVR 573
                +    L+      + T     + S +SL+ L+  +       ++   +A   +V 
Sbjct: 554 GAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVM 613

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +++ H A G E  +V +      ++ +   +   +      D    +    S        
Sbjct: 614 VLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASM------- 666

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----SNQRTWYDMVYDSF 689
                 +     E  RLL   M RA  +L++    + +             ++++   + 
Sbjct: 667 ------RAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720

Query: 690 HNDERVKKIKLTNS--------------INKDEWIAYEWSTHHPENTPLEREETI----K 731
            + E V    ++                +      A + +      T L R         
Sbjct: 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF-------NRGL 784
              +   +     S    D ++   L PST+       L  L   +            G 
Sbjct: 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840

Query: 785 IIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
           ++H L                  +      A+ + A E       I   ++      A S
Sbjct: 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQ----WRAQS 896

Query: 843 CDSYSEVSVSGKINCPKKD-------IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIE 894
               +EV V   I+   +D       I + GR D++       + I + KT      + +
Sbjct: 897 RSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDD 956

Query: 895 HIPYTHIAQLSIYEKILKD---SYPNKSLVCLLIYV 927
                  AQL++Y+  + +      ++     L+YV
Sbjct: 957 AQQ---HAQLAMYQLAVAEGLVRAGDEPGGARLVYV 989


>gi|291519610|emb|CBK74831.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens
           16/4]
          Length = 565

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 92/558 (16%), Positives = 169/558 (30%), Gaps = 123/558 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y+  K K  VLDF+D++   + L  +      +  K      + L+DE+QD + 
Sbjct: 122 AEIPKKYQFLKDKYHVLDFDDMLTKAHQLFLQ---RPQVLTKWQDRFTYFLVDEMQDMND 178

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+++I  L+               LF VGD+ QSIY F GA PK +     I       
Sbjct: 179 LQFQLILMLSA----------KTNNLFCVGDDDQSIYGFRGANPKMMQDFMEIYP----- 223

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                + I L  ++R+  +I+T    +  + +N       STT                 
Sbjct: 224 ---DATKIILDYNYRNPKNIVTAAGSLIGVNKNRFPKDIKSTTP---------------- 264

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                    + + +S    A  I  +I  +              
Sbjct: 265 --------------------EGSIQVLERNSPEEEADYIINSICKLREKG---------- 294

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFIL 429
           +   +I VL R   D   +            I     ++   +  H  I D+    +  L
Sbjct: 295 VSLDEIAVLYRNHSDARYVVDRL----VSSDIPFYLKEQMPNVYTHFIISDIENYFQLAL 350

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                   + +L  P        + +   +R   +        +           ++ + 
Sbjct: 351 GNITKARMLAILNRPNRFLHRQSVERGAEKRAMLDFYKINPGNY---------RTVEALW 401

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNS 543
             I +    +     + I  A                  +E  DVLD F+    R  +  
Sbjct: 402 ADIELIGKMNAVAAISYIRRAMGYDTFLAEEAVKKQVDYSEYRDVLD-FITEVFRECRTV 460

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             ++ +L     +     K  +     +V + T+H++KGLE   VF++     +  +   
Sbjct: 461 RQAIDKLNILRLKIDYENKNRNVDKTGKVGLYTLHSSKGLEFENVFIIAVNDGIIPNS-- 518

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                            K   +   E   RL YVG+TR    L 
Sbjct: 519 ---------------------------------KAETREEMEGERRLFYVGITRCKKNLS 545

Query: 664 ICKHSNTSNEKKSNQRTW 681
           I  ++  + +K       
Sbjct: 546 ITYNNKKNRDKSRFLSEM 563


>gi|190890273|ref|YP_001976815.1| ATP-dependent DNA helicase protein [Rhizobium etli CIAT 652]
 gi|190695552|gb|ACE89637.1| ATP-dependent DNA helicase protein [Rhizobium etli CIAT 652]
          Length = 703

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/673 (15%), Positives = 197/673 (29%), Gaps = 143/673 (21%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQCIEERFSLLS 70
            E I +D+       ++D   +       G   +   A    L         E+   L++
Sbjct: 77  VERICRDVLGTNAGVMADALAWSGTFHGIGARLLRDYAHQIGLDADFTIHDREDSADLIN 136

Query: 71  SFFLTQKFTPQKNIITQE---------INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                  F+  ++    +                L + L+ +         +        
Sbjct: 137 LIRHDLGFSKTESRFPAKGTCLAIYSRAVNSETALDQVLRDAFPWCAAWEKQLR------ 190

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                      L A Y EAK+   VLD++DL++    ++ +  ++  I        +H+L
Sbjct: 191 ----------ELFACYVEAKQSQNVLDYDDLLLYWAQMVGESVIAEDI----SSRFDHVL 236

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ +Q  ++ +L              + L  VGD+ QSIYSF  A  + +L   
Sbjct: 237 VDEYQDTNRLQASILMAL----------KPQGQGLTVVGDDAQSIYSFRAATVRNILDFP 286

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         +I+ L  ++RST  ILT  + V  +       +             
Sbjct: 287 AAFS-------PPANIVTLDRNYRSTQPILTAANAVIDLASERFTKN------------- 326

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW +  S    +    ++               +  AR +A  + +      
Sbjct: 327 --------LWTERQSSERPRLVTVRD--------------EADQARYVADKVLDNREEG- 363

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    ++ K   VL R    +  +            I  V        D   +KD+
Sbjct: 364 ---------LKLKQQAVLFRASHHSGPLEVEL----TRRNIPFVKFGGLKFLDSAHVKDM 410

Query: 422 MALGRFILSQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           +A  RF  +  D ++   +++  P    S             +                 
Sbjct: 411 LAALRFAQNPRDRVAGFRLMQILPGVGPSTAQKALDLMAEDASPLAALAAMPAPPRSGED 470

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
           +   +  + E+                  A    +  +          L +         
Sbjct: 471 WTAFVSMLQEMKSGRAGWPAEIELARQWYAPHLER--LHEDAATRQADLLQLEQIA---- 524

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              Y+S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++    
Sbjct: 525 -GGYASRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWTRVFMLNVVDG 583

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                                                  +     +  EE  RLLYV MT
Sbjct: 584 CIPSD----------------------------------LAVGATAEIEEERRLLYVAMT 609

Query: 657 RASDQLIICKHSN 669
           RA D L +     
Sbjct: 610 RARDGLDLVVPQR 622


>gi|331694962|ref|YP_004331201.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949651|gb|AEA23348.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 1224

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 113/778 (14%), Positives = 227/778 (29%), Gaps = 103/778 (13%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           ++    L+   +    +     L       +    +  + T   +     + +   +   
Sbjct: 102 VRRASVLAGEPTVSTYHAYAGRLVAEHALRLPAEPAARLLTQTASWQLAHRVVSTWADDL 161

Query: 61  CIEERFSLLSSFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
            I+   + ++ + L       +++     + + + ++ + L+ +     +  +   TYK 
Sbjct: 162 EIDRVPATVTGYLLALAGEIGEHLADPAAVRRLAHEMADALENAPRAKGQRAEPSQTYKR 221

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           + +          L   +   K+    +DF D +     +  +      +          
Sbjct: 222 WITAQRMRAELLPLVEAFAARKRAERTIDFADQMAIAARVAHEHPE---VGATERATYRA 278

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT   Q  ++R+L      G        ++ AVGD  QSIY + GA    + R
Sbjct: 279 VLLDEYQDTGHAQRVLLRALFGRI-PGTPARDDDLSVTAVGDPCQSIYGWRGASAGNLAR 337

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +                  L  SFR+  ++L + + V      A G    +   +R   
Sbjct: 338 FRGDFPS----GDAPADEYGLLTSFRNPPEVLALANTVSEPLRTAPG--AVAVGELRAGP 391

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
           +         L   V                        ++  + +A  +A    +    
Sbjct: 392 TAAVGDVRAALLPDV------------------------DAEIAWMADAVAAQWRSADAE 427

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                             VLVR+R D   +    R       + V       L D   ++
Sbjct: 428 GRPAPTS----------AVLVRRRADMDPVAAALRA----RGLPVEVVGLGGLLDTPEVR 473

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY---------- 469
           DL++  R +       + + +L    F     D+  +  +  E                 
Sbjct: 474 DLVSALRLVADPLAGPAAMRLLTGARFRLGVADLAALWARARELVPPMPGRGPGPLGPAE 533

Query: 470 -------------------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                                     ++++  G  + + + + +  L          D  
Sbjct: 534 LALGALPGEQAEQAGIVDALDDPGPPEQYSPAGFDRIRRLGRDLMWLRART-SAPLTDLV 592

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELE----QYPP 559
                      +  +R G      LD F +           +SL  L+  LE        
Sbjct: 593 ADAERLLLLDTETAARPGPVGRAHLDAFADVVAEFSAGAEVASLTALLDYLETAEQAEDG 652

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK-------HIKKMHIMPSL 612
                     + V+++TVH AKGLE  +V +    +QVF  +              +P  
Sbjct: 653 LAPGEIEVTPDRVQVLTVHAAKGLEWEIVAVPHLVAQVFPGRKIGGDWLTSPAELPVPLR 712

Query: 613 NDDPGIPIWI----PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            D   +P +        K     V+   + L      E  RL YV +TRA   L++  H 
Sbjct: 713 GDAADLPAFDLPAGADRKECEAAVTAHQRALDDRRLVEERRLFYVALTRAERVLLLSGHR 772

Query: 669 NT--SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                ++ +       ++         RV+             +A    T      PL
Sbjct: 773 WGAVGDKPREPSEFLVEVARAMPAAGGRVEIWADEIGEGASNPVADRQVTAQWPADPL 830



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 59/276 (21%), Gaps = 24/276 (8%)

Query: 686  YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ------LMDEQKI 739
                   +     +               +   P   P + E                  
Sbjct: 961  ATDPGAPDPEAAGRSRAQPQSGSRPDAPHAPDAPVLDPDDPEGWAADVDVLLAERAAAAQ 1020

Query: 740  PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
               +  P    +++   L         +      L  N    RG   H  L+  F     
Sbjct: 1021 RPVVELPAHFSVSQLVELAADPDALAARLRRPLPLPPNPHARRGTAFHAWLEQRFGAAG- 1079

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
                          +L  A +       +   L++  + +  +      V V        
Sbjct: 1080 ---------LLDLDELPGAADDGAAPDDVLEELQDAFLASEWAD--RRPVEVEVPFETVI 1128

Query: 860  KDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
              I + GR+D +         + ++KT        E        QL+ Y           
Sbjct: 1129 AGIAVRGRMDAVFQDPDGGWTVVDWKTGPPPD---ESRLGALAVQLAAYRLAWAALQGVD 1185

Query: 919  S--LVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
               +     YV   +               +   +P
Sbjct: 1186 PSRVRAAFHYVRSRRTLRPADLLDADGLRALLDGVP 1221


>gi|313837605|gb|EFS75319.1| UvrD/REP helicase [Propionibacterium acnes HL037PA2]
 gi|314972544|gb|EFT16641.1| UvrD/REP helicase [Propionibacterium acnes HL037PA3]
          Length = 1069

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 116/953 (12%), Positives = 265/953 (27%), Gaps = 105/953 (11%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEERFSL 68
           +     P      + + + ++ + +E    T+   A+ +      +  +  +       L
Sbjct: 55  VLAQTRPSAQALRTALVRRLAGAHLEPQVMTVHALARRIVASPSRRLLTAPEQEFRMREL 114

Query: 69  LSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L++  ++      +    T +       +  +L++   +   + D   T+ + +      
Sbjct: 115 LAARDMSDWPDELRTCAGTAQFASDVRVMAARLRQEGCDPQDLTDAGVTWGVPE-----W 169

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +     A Y +       LD+ + +      L +      +R      I  ++ D+V +
Sbjct: 170 RVLGPFLADYLDVLDLEGTLDYAEAVHRARIALTRPGADIEVR----SRIKLLICDDVVE 225

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
               Q   +  +                     D  Q+IY F GA  +R+          
Sbjct: 226 CDSSQIRFLSQIARC----------HIPCVLTADPDQTIYGFRGAVAERLDEVIDEFP-- 273

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG---- 303
                   S+  L  ++R++  I  VV+ + +        S+          +  G    
Sbjct: 274 ------DVSVHHLATNYRNSQHIAEVVESLRTRMPAVPSSSQLRRRANHSAVTEDGTVAA 327

Query: 304 --QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT----ISNMI 357
                  +L  ++             +W +            I+A  +A      + +  
Sbjct: 328 VRAPSMTRLVRKIAGTLRHAHVADGVAWRNMAVVTRHGGELGIIATVLAAEDIPVLRSRD 387

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                  N    ++ A  I V +   +        T        I      R      L 
Sbjct: 388 EHALSDINAVTHIVNALAIAVALASGRQPSDRDVATLLSNPLAGIDRSLVHRLETWCRLV 447

Query: 418 I---KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                D   LG         ++     + P    S  ++     +  +  +   +     
Sbjct: 448 RGIDIDWPLLGELGADPMAAVAAERGNERPEDG-SRAEVDGRAEEAGKEGSETAHEAYSV 506

Query: 475 NCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISR---FGNEVI 526
             G+      +  + + +  A        S H+    +           SR     +   
Sbjct: 507 PPGLRALAQPLAMMVQRVQRAADLLRSDASCHEALWALWQGSSWTSSLRSRALAGDSAAD 566

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTA 580
             LD   +     +     +       L      EQ P    R    + + V ++T H  
Sbjct: 567 RDLDGLCSLFDMADGAQTMAGIAGARRLIEVVRQEQIPADRARESDEDRDGVSVVTAHRV 626

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KG E  VV +       +   +     +         +      S               
Sbjct: 627 KGREFDVVAVCGLEEGNWPADNHTGSLVRADRWSPDSLVAAPGWS--------------- 671

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                   RLL V  +RA  QL++C   +    ++ S        V D   +       +
Sbjct: 672 -ENLRAETRLLLVACSRARRQLLLCTVESAEEGKRPSGLVAGLPHVEDHVDSLNFTSLTE 730

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQ-------LMDEQKIPKKLFSPIKNDIN 752
           L   + +      E      E   L  +  +++          +        +P + D+ 
Sbjct: 731 LVGELRRVVVDNSELPGVRAEAQALLDDLRVEKHRGRQLVPQADPSTWWCQGAPHQADVA 790

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKL-LQVIFTLPEHKRKN 803
               L+ S I           ++             + G ++H++  + +          
Sbjct: 791 GEIELSASHIGELLTCPRRWFMTRRAGASSGSAFQASIGSLVHRICAENMGHWSLPGALT 850

Query: 804 FITSY---CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
            +          A+     +  +   ++ R   +  + +       +EV V G I  P  
Sbjct: 851 ELEEAWPEIDVTAEWQRNAKLADAKAAVQRF--DGWLQSRHRQLIGTEVRVDGTIEVPSG 908

Query: 861 DIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
              + G ID++    +   ++ + KT      + E    +H  Q+ +Y+ ++ 
Sbjct: 909 TARVRGSIDRLERDAEGACYVVDLKTGA---SQSEETKRSHRLQIGVYQAVVA 958


>gi|188591039|ref|YP_001795639.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
 gi|170937933|emb|CAP62917.1| putative ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG
           19424]
          Length = 702

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 96/671 (14%), Positives = 185/671 (27%), Gaps = 119/671 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--QQASQTQ 60
            R    +    E I                ++       G   + + A+TL    A    
Sbjct: 83  RRAAAEMGRRVERIVDQALGTSTGAGRAALQWSGTFHAIGARLLREYAETLGLSPAFTIS 142

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              +   L+         +   +   ++  +    +  ++  +Q     +  +      F
Sbjct: 143 DRGDSADLMHVVRHDLGLSETASRFPKK--ETCLSIYSRVVNTQAPLEDVLRQ-----QF 195

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                     + L A Y EAK+K  VLD++DL++     + +  ++      +    +HI
Sbjct: 196 PRYAMWADALRTLFAGYVEAKQKQHVLDYDDLLLYWAQAMAEPAIAQD----MGARFDHI 251

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIY+F GA  + +L  
Sbjct: 252 LVDEYQDTNALQASILLAL----------RPDGRGLTVVGDDAQSIYAFRGATVRNILDF 301

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            + L  ++RST  IL   + V  +          S         
Sbjct: 302 PAQF-------TPAAQQVTLSQNYRSTQPILQAANAVIGLAAERYTKDLWSERQ------ 348

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
              + G + +                             +  +  AR +   +       
Sbjct: 349 SAEKPGVIVV-----------------------------NDEADQARFVVEQVLARREAG 379

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                            VL R    +  +            I  V        +   +KD
Sbjct: 380 LALMAQ----------AVLFRAADHSAQLEIEL----ARRNIPFVKFGGLKFLESTHVKD 425

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR--HETETVYEYIQKFANCGI 478
           ++A+ R++ +  D ++    L+  L         ++                 +      
Sbjct: 426 VLAVVRWLENPRDRMAGFRTLQ-LLPGIGPKTAARVLDAMALATEPLFSLQEFEPPPAAA 484

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +  ++     L  +A        F  +L       + +          L +       
Sbjct: 485 PAWADLLTLARAL--MAPTSPWPSEFEQVLAWYTPHLERLHDDAPARQADLQQLERIAAT 542

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                   L EL  +            S + + + + T+H+AKG E   V++++      
Sbjct: 543 YGARE-RFLTELTLDPPSASSDESGVPSRDEDYLILSTIHSAKGQEWKAVYVLNAVDGCM 601

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                             RLLYV MTRA
Sbjct: 602 PSDLATGTTEEIEEE----------------------------------RRLLYVAMTRA 627

Query: 659 SDQLIICKHSN 669
            D L +     
Sbjct: 628 KDHLDVIVPQR 638


>gi|315637850|ref|ZP_07893040.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter
           upsaliensis JV21]
 gi|315482091|gb|EFU72705.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter
           upsaliensis JV21]
          Length = 909

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 128/899 (14%), Positives = 273/899 (30%), Gaps = 186/899 (20%)

Query: 35  VSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ----KNIITQEIN 90
           ++++ + G   +      L++   +   +   S   S  L  K   +         ++  
Sbjct: 180 LNITNQPGLSKLQSAYDDLRKYCLSFDNKNLKSNFKSEKLHLKEFLKSPIIDQFEEKKYL 239

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
           +            ++ F++   ++            + L K       +  K   +L F 
Sbjct: 240 RDLAQEDVNFTAKRERFLESLRQYALELEDFKIANLMELLKIFIKAKNDLHKNKNILSFS 299

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           D+     DL++  D+   I +++D  I+H+LIDE QDTS++Q+E+++ +  +   G+   
Sbjct: 300 DISRRVLDLIR-SDLKDMIYFRLDGRISHLLIDEFQDTSVVQYEILKPIIAELVSGEGVK 358

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              R+ F VGD+KQSIY F  ++ +     +            +     L  ++RS   +
Sbjct: 359 -KNRSFFYVGDKKQSIYRFRNSKKELFDLLRDTF--------TQIKTESLDTNYRSLGHL 409

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +  V+  F          +      +    +    G V++ +   +          +   
Sbjct: 410 IDFVNTQFKN--------KFENFIPQKILEQNQNKGFVRIVQSEETDAKKTKQELLKVLK 461

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
              D L                               ++ I  + I +L  +  D   I 
Sbjct: 462 EQLDFL------------------------------HQKGILYEKICILCWQNNDANEIL 491

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              +  K    I        +L +  +++ ++   ++                 +F    
Sbjct: 492 EYLKEHK----IPAFTQSNVLLENKASVRLVLEYAKYC----------------IFG--- 528

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            D F +   R       E                   +   +  +   +           
Sbjct: 529 -DAFYLEVMREFLGFEPE------------------RLQLDLAKSPEQNVLYLI------ 563

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
               +       +     L +FL +  +  + ++  L      L+               
Sbjct: 564 ----RNLKLDLADIA---LLQFLEYAKQ--KGNFMELLFSPCPLKMIGEENY-------- 606

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V IMTVH +KGLE   V ++D  S+   +   + +                    +R+ 
Sbjct: 607 GVSIMTVHKSKGLEFDYVIVLDRLSK-GQNDSKQILLEYDIQKGWELRIKNAFHKAARDT 665

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN--TSNEKKSNQRTWYDMVYDS 688
              + +  ++K+ +++    LYV +TRA + LI+ K +    +    S       +  + 
Sbjct: 666 SYQNFLARIEKAQKDDDINKLYVALTRAKNGLIVIKKNPFCVNGNNPSYFNGKGYLDLEY 725

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                  ++    N   K+     E+     +N                           
Sbjct: 726 CEIGTLNEQTTPKNEEKKELNALKEFVKIPLQNV-------------------------- 759

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                             K  L         F+        +Q +        +N     
Sbjct: 760 -----------------EKIELSEEFHFGNAFHF------CMQSLRLPKGENLENVKQKT 796

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINCPKKDIIISGR 867
             K        E+  L   +  LLEN      +       E  +S   N   K      R
Sbjct: 797 RDKFRHFLNKDEFNTLFKRVQNLLENKDFQALLQGKKLLKEQPLS--FNGELK------R 848

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
           +D +++ ++  FI +YKT     +  E        Q+++Y++ +K+    ++    LIY
Sbjct: 849 LDLLALDEKEAFIIDYKTGEFNAKNAE--------QITLYKQAIKEILNKQNTRAFLIY 899


>gi|115378130|ref|ZP_01465306.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|310821254|ref|YP_003953612.1| ATP-dependent DNA helicase, uvrd/rep family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364872|gb|EAU63931.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1]
 gi|309394326|gb|ADO71785.1| ATP-dependent DNA helicase, UvrD/REP family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 692

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/730 (13%), Positives = 215/730 (29%), Gaps = 130/730 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +    E +      +        +      +    PT+         +      E+   
Sbjct: 83  EMTRRVEELAGGFVDVRRILGGTFHHAAHALLRQFAPTL-----GFATSFTVLDREDARD 137

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L++S    +K + ++     E+          L+K   E                 L   
Sbjct: 138 LMASCVSERKISRERRFPRAEVVLDMVSTAINLQKPLAEV--------LVDRRPQFLPLA 189

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   +++ K++  ++DF+DL+++   LL +      +R ++ +    +L+DE QD
Sbjct: 190 EEVLAVGQRFQQRKQQMNLMDFDDLLLHLKRLLAEHPA---VRAQLVERFQCVLVDEYQD 246

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q +++  L  +           + L  VGD+ QSIYSF GA+   ++   +     
Sbjct: 247 TNRLQGDLVDLLVGE----------RKNLTVVGDDCQSIYSFRGADFTNIIDFPQRYP-- 294

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +  L  ++RST  IL + +   ++ +        ++               
Sbjct: 295 ------GCGVYPLTRNYRSTPQILALANASIALNQRQFHKQLTASRQ------------- 335

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                       +         A  +A  I  +           
Sbjct: 336 ----------------------PGVPPVVVPTRDTDEQATFVAQRILELREEG------- 366

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  +++ VL R    +       +       I           +   IKD++A  R 
Sbjct: 367 ---LPLEEMAVLYRAHSHS----LELQIELTRRGIPFRVRSGVRFFEQAHIKDVLAHLRL 419

Query: 428 ILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEYIQ------KFANCGIS 479
           + +  D+L+F  +  L S +   + + ++       E  ++ + ++      +      +
Sbjct: 420 VHNPGDELAFKRVVKLVSGVGQATAEALWTALGALPEAASLKDALRHPDVSAQVPRRASA 479

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE--VIDVLDEFLNFTL 537
            F      +  L       +P      +L      +     FG +    + + +   +  
Sbjct: 480 GFARFAALMTRLTREDAARTPGQLIEDVL-RGGYGEYLRDEFGADGRREEDIRQLAEYAG 538

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           R E          I+ + ++         A    + + TVH AKGLE   VF++      
Sbjct: 539 RFE--DLPRFLSEIALISEFSAEEAVETEAPDEFLTLSTVHQAKGLEWGAVFVIWLAEGR 596

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F   +  +                                            L YV +TR
Sbjct: 597 FPMVNAARDEAEEEEERR----------------------------------LFYVAVTR 622

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A D+L +     T+ +  +          +     E     +L     +   +       
Sbjct: 623 AKDELALTYPLTTNPQDGTRIIVRQSRFIEELPVGEEAPYDRLILEELETPELPRLEGGK 682

Query: 718 HPENTPLERE 727
            P+  P   +
Sbjct: 683 APKPGPDALD 692


>gi|217979456|ref|YP_002363603.1| UvrD/REP helicase [Methylocella silvestris BL2]
 gi|217504832|gb|ACK52241.1| UvrD/REP helicase [Methylocella silvestris BL2]
          Length = 694

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 111/675 (16%), Positives = 209/675 (30%), Gaps = 127/675 (18%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I +        Q++   ++       G   +   A    L  A    
Sbjct: 75  RRAAAEMTRRVETIARKAMGDRAGQMTQALRWSGTFHAIGARLLRDYADQIGLDPAFTIH 134

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F+  +    T+             + + +  +     + +   
Sbjct: 135 DREDSADLMNLVRHELGFSKTESRFPTKGTCLSIYSRCVNAELAIEPVLGASFPWCSAWA 194

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            +         K L A Y +AK++  VLD++DL++     + +  ++  I        +H
Sbjct: 195 IE--------LKQLFAAYVDAKQRQNVLDYDDLLLYWAQAVGEAALADDI----GDRFDH 242

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++++L            S R L  VGD+ QSIYSF  A  + +L 
Sbjct: 243 VLVDEYQDTNRLQASILKAL----------KPSGRGLTVVGDDAQSIYSFRAATVRNILE 292

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +              II L  ++RST  IL   + V  +       +           
Sbjct: 293 FPQAFS-------PPAKIITLDRNYRSTPAILAAANGVIDLASERFTKN----------- 334

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW +  +    Q    ++               +  AR I   +      
Sbjct: 335 ----------LWTERKAAAPPQLVGVRD--------------EADQARYIVERVLENREG 370

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      +  K    L R    +  +            I  V        D   IK
Sbjct: 371 G----------LTLKQQAALFRASHHSGSLEVEL----TRRNIPFVKFGGLKFLDAAHIK 416

Query: 420 DLMALGRFILSQEDDLSFVCM-LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           D++AL RF  +  D ++   + L  P    +          +                  
Sbjct: 417 DILALLRFAENPRDRVAGFRVMLLMPGVGPASAQRALDFMAQASDPIGALADAPAPRRAG 476

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            +++  ++ + +L             + I  A+   +  + R   +    L + +     
Sbjct: 477 EEWRSFVEIVAQLGSGRAGWP-----SEIERARLWYEPHLDRMHEDAAARLADLIQL--E 529

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
              + Y+S +  ++EL   PP     H+     + + + + T+H+AKG E   VF+++  
Sbjct: 530 QIASGYASRERFLTELTLDPPDATSDHAGAPLLDEDYLILSTIHSAKGQEWASVFILNVV 589

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                    +     +  EE  RLLYV 
Sbjct: 590 DGCIPSD----------------------------------LGAGTTAELEEERRLLYVA 615

Query: 655 MTRASDQLIICKHSN 669
           MTRA D L +     
Sbjct: 616 MTRAKDDLHLVVPQR 630


>gi|15617053|ref|NP_240266.1| exodeoxyribonuclease V 135 kDa polypeptide [Buchnera aphidicola str.
            APS (Acyrthosiphon pisum)]
 gi|11132307|sp|P57529|EX5B_BUCAI RecName: Full=Exodeoxyribonuclease V beta chain
 gi|25289140|pir||H84982 exodeoxyribonuclease V (EC 3.1.11.5) 135 kD polypeptide [imported] -
            Buchnera sp. (strain APS)
 gi|10039118|dbj|BAB13152.1| exodeoxyribonuclease V 135 kD polypeptide [Buchnera aphidicola str.
            APS (Acyrthosiphon pisum)]
          Length = 1174

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 131/836 (15%), Positives = 279/836 (33%), Gaps = 133/836 (15%)

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            + F DL+     LLK      +++  I ++     IDE QDT + Q+++   L +     
Sbjct: 350  IGFNDLLS---ILLKTIKKEKFLKDLIIKKYPAAFIDEFQDTDIQQYKIFNLLYKK---- 402

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                +    LF +GD KQ+IYSF GA+    L  K   +K             L  ++RS
Sbjct: 403  ----NKTTVLFLIGDPKQAIYSFRGADIFSYLYAKSKIKKYY----------YLDTNWRS 448

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            + +I   ++ +FS   N       +   I    S         + +   +          
Sbjct: 449  SINICKSINFLFSQNINP--FIFKNIPYIPVVPSSKNLKMNFTINDVAQTP--------I 498

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVR 381
              +      +  +     ++++ A  IS  +     G   I +   ++++ A DI +LVR
Sbjct: 499  SFFLQEEKEVSIDDYQVWISKQCANEISFWLTCAKTGKAKITTKNGEKILTANDIAILVR 558

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             RK+  LI      L     IS+  +++  +   L  ++L+ +   IL  E+++     +
Sbjct: 559  NRKEADLIQDELEKL---NIISIYSSNKNSVFQTLDAQELLWILESILEPENEILLQQSM 615

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +    +  +           + +   + +    I +   V + I  +I   Q  S  
Sbjct: 616  ASHI--LKKLSLVVENKTISNKNSYFIIEKLYEYHDIWEKIGVFQMIKIMILEYQKNSFC 673

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
                             +   N     + E L    +      S ++    ++       
Sbjct: 674  TEINE------------NHIKNLNFLHIGELLQEQFQFFHKKISLIRWFQKKISTKTQPE 721

Query: 562  KRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                         ++I+T+H +KGLE P+V++       FS    K    +         
Sbjct: 722  YNESIKCFDESPSIKIITIHKSKGLEYPIVWIP------FSIDFKKSTLAIYHDQ----- 770

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN--EKKS 676
                 ++    N  +  +K   +    E  R LYV +TR+     I          + ++
Sbjct: 771  --KSLKTFFDENYSNKFLKIADEERLAEDIRFLYVALTRSILHCSIGLACLIKKIIKNRN 828

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL--- 733
            N       +  +    + +    L   + K     +    ++ +N    R+     L   
Sbjct: 829  NSDIHQSGLGFTIQGGKTMNYEGLLEKLKKLSINNFIEVKNNTDNFSFSRKPQTISLICK 888

Query: 734  ---MDEQKIPKKLFSPIKNDINEPYILNPSTI------------DTKGKTNLESLLSDNQ 778
               ++++ I         + +N+   L+                  K   +L ++ +  +
Sbjct: 889  NKFLNKKNIRNTWSITSFSQLNKINKLSKHHQKEVALKELCIKNQEKKNQSLLTIHNFPK 948

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-- 836
                GL+IH +L+ +  + ++K  N+ +    K       K    L+  I  ++  P+  
Sbjct: 949  GKKTGLMIHYILKNL-HVLKNKNSNWFSCILEKYNIHI--KWTSVLIYWIKNIINTPLND 1005

Query: 837  ----MTTAMSCDSYSEVSV--------------------------SGKINCPKKDIIISG 866
                ++      S  E+                            S +++      +++G
Sbjct: 1006 EKIILSRIDEKSSIRELEFFFPIKNMLYSTELNKIIQSINPTSITSPQLSFNPVKGMLTG 1065

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
             +D + I ++  +I +YK++                E +   +  Q  IY   +  
Sbjct: 1066 FVDLVFIWKKKYYILDYKSNWLGKNNNFYSSIHINKEIVKKRYHLQYQIYTIAIHK 1121


>gi|31794379|ref|NP_856872.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97]
 gi|121639087|ref|YP_979311.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|215432161|ref|ZP_03430080.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis EAS054]
 gi|219559254|ref|ZP_03538330.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
 gi|224991579|ref|YP_002646268.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260202355|ref|ZP_05769846.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289444773|ref|ZP_06434517.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289571424|ref|ZP_06451651.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
 gi|289755321|ref|ZP_06514699.1| UvrD/Rep family helicase [Mycobacterium tuberculosis EAS054]
 gi|31619975|emb|CAD95319.1| POSSIBLE ATP-DEPENDENT DNA HELICASE [Mycobacterium bovis AF2122/97]
 gi|121494735|emb|CAL73216.1| Possible ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224774694|dbj|BAH27500.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289417692|gb|EFD14932.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46]
 gi|289545178|gb|EFD48826.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
 gi|289695908|gb|EFD63337.1| UvrD/Rep family helicase [Mycobacterium tuberculosis EAS054]
          Length = 1055

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/996 (11%), Positives = 259/996 (26%), Gaps = 180/996 (18%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS--------FFL 74
               +   +    S +         +    L +   +   +     L +           
Sbjct: 83  RAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGPAATT 142

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T     +  + T     +  +L  +  +       +          +        A    
Sbjct: 143 TWPAHLRPALTTAGFATELRNLLARCAE-----RGLDPLELQQLGRRRGRPEWIAAGQFA 197

Query: 135 AHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             YE+                   L   +L+    +      V   +       +  +L+
Sbjct: 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFA---VDPELLAAERARVRTLLV 254

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           D+ Q        ++R L     +              GD  Q+++ F G EP  +L    
Sbjct: 255 DDAQQLDPQAARLVRMLAAGTELA----------LIAGDPNQAVFGFRGGEPTGLLA--- 301

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                    G     + L +S R    +   V  +               T     S  +
Sbjct: 302 --DDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTV 359

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              G+                                      A   A  I++ +    +
Sbjct: 360 RLAGS--------------------------------------AHAEAAMIADALRRAHL 381

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   +    + V+VR       +               VG     L+   A++ L+
Sbjct: 382 ID-----GVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGG---PLSAEPAVRALL 433

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT----------QRHETETVYEYIQK 472
            +        D    + +L  P+       + ++             R   + + E +  
Sbjct: 434 TVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGG 493

Query: 473 FANCGIS---KFQHVIKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGN- 523
            A          + V   +       +  S     P             ++++++   + 
Sbjct: 494 DAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHG 553

Query: 524 -----EVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVR 573
                +    L+      + T     + S +SL+ L+  +       ++   +A   +V 
Sbjct: 554 GAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVM 613

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +++ H A G E  +V +      ++ +   +   +      D    +    S        
Sbjct: 614 VLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASM------- 666

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----SNQRTWYDMVYDSF 689
                 +     E  RLL   M RA  +L++    + +             ++++   + 
Sbjct: 667 ------RAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720

Query: 690 HNDERVKKIKLTNS--------------INKDEWIAYEWSTHHPENTPLEREETI----K 731
            + E V    ++                +      A + +      T L R         
Sbjct: 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF-------NRGL 784
              +   +     S    D ++   L PST+       L  L   +            G 
Sbjct: 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840

Query: 785 IIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
           ++H L                  +      A+ + A E       I   ++      A S
Sbjct: 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQ----WRAQS 896

Query: 843 CDSYSEVSVSGKINCPKKD-------IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIE 894
               +EV V   I+   +D       I + GR D++       + I + KT      + +
Sbjct: 897 RSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDD 956

Query: 895 HIPYTHIAQLSIYEKILKD---SYPNKSLVCLLIYV 927
                  AQL++Y+  + +      ++     L+YV
Sbjct: 957 AQQ---HAQLAMYQLAVAEGLVRAGDEPGGARLVYV 989


>gi|241661828|ref|YP_002980188.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240863855|gb|ACS61516.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 970

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 130/894 (14%), Positives = 258/894 (28%), Gaps = 165/894 (18%)

Query: 88  EINKKSPD-LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           ++  +  D   E L+  ++ +   RD   +     ++ A L          ++   ++  
Sbjct: 142 DLRPRFKDRYFETLENVRNAWNIYRDEGLSIAEIDASDAQL---GKTLRSIQDGLARDQF 198

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF  ++    ++  +   +  +R ++   I H+LIDE QD S  Q E++          
Sbjct: 199 IDFASMV---REVADRSQSAGRVRERLAS-IRHLLIDEYQDVSGAQEELV---------- 244

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
              HS   ++F VGD+ QSIY + GA    +L  +              S   L ++FRS
Sbjct: 245 AAVHSLGGSIFVVGDDDQSIYGWRGAHVANILEFEDRYPN--------VSRHVLDINFRS 296

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  I+   +   +        ++     +  +       G  QL                
Sbjct: 297 TRAIVETSNAFAA--------AQLGPQRLPKQPEAYADQGPRQLLVHHFPT--------- 339

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDT-IFSNGKKRVIQAKDILVLVRKRK- 384
                           +  A  +A  I+ +IG +     +   R +   D  +L+R  K 
Sbjct: 340 ---------------RAEEAEWVADRIATLIGAEYKKRPDDPGRGLTPADFAILMRSTKS 384

Query: 385 ---DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
              D                I    +    + D  A++ L  +   +     D +    L
Sbjct: 385 PEQDGSPRHAAFSDALAMRGIDFTLSAGGSVFDRPAVQALREVFSALEQGTIDRNLADAL 444

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI--KYIHELIHIAQFCS 499
            +          +     R     + E+ ++      S  Q +     + +L+  A   +
Sbjct: 445 VTEHI----RPAYPHVNVRETYNVLAEWGRRIHQPAGSARQRLFPQDLLFDLLE-AFGLA 499

Query: 500 PHDFFTLILGAKKGRQQFISR--------FGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
             DF   ++       + +                  +  FL                  
Sbjct: 500 KSDFDEDVMRDIGLFSRMLQDVESVYLSVDSTNRFRAVVRFLQQVAD------------- 546

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               +      +   +  N V I TVH  KGLE PVVF+VD     F  K      ++P 
Sbjct: 547 ----KGYDVSTKDSVSRPNAVTISTVHQVKGLEFPVVFVVDVVPGRFPGKQSSFDSLLP- 601

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                            N + S +      +      RL Y  MTRA   L +   +   
Sbjct: 602 ----------------ANLMASAIAHGAYTNNVFAEARLFYTAMTRAERFLHVTGAALLP 645

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
           N K+SN+++ +              ++                             E   
Sbjct: 646 NGKRSNRQSTFAAALKDIELCTDPTRLP----------------EDLNRAPQERDAEEAT 689

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
                  +   L  P      + Y  +P   +  G                G ++H  ++
Sbjct: 690 LPTSFSDVKYYLNCPKNYQFRKSYGFSPRVPELFG---------------YGTVVHVAIE 734

Query: 792 VIFTL------PEHKRKNFITS--YCTKNAKLWPAKEYKNLLLSI---TRLLENPMMTTA 840
            +  +         + +       +    A     +             R +    +   
Sbjct: 735 KLHEMFRDRAPTPDEAQAVAEQNFHLKHVAPSRDPETRPGAYEQAKEKARKIAGEYVQQY 794

Query: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ-----NIFIFEYKT---HHHVPQE 892
            +        V  +   P +  +I+G ID +             + ++KT          
Sbjct: 795 GTDFVQQRQ-VEVRFEIPARGCLITGAIDLLMKCDDVGEIVEAHVLDFKTMEGGKDPLAN 853

Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP--QNKLNKAF 944
            +        Q+ +Y K  ++ Y   +    +  + + +   IP     +N A 
Sbjct: 854 AKLDWRELSLQVQLYAKAAREVYSENAATGSIHLLKDNRRIEIPIDPESVNAAI 907


>gi|291295632|ref|YP_003507030.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279]
 gi|290470591|gb|ADD28010.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279]
          Length = 833

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 117/659 (17%), Positives = 219/659 (33%), Gaps = 88/659 (13%)

Query: 61  CIEERFSLLSSF-FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD-EFIKIRDRFNTYK 118
             +     L    FL     P+     +++  K+      L +    +   ++ R    +
Sbjct: 238 DPQMARKHLEEIRFLKLPRAPEAREFLRDLKDKARRAALFLPEMGSGDLFLLKHRHLLAE 297

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
            F+     L          +  K+++ VL+F DL ++    L        +         
Sbjct: 298 AFQGVRNFL----------QRRKREDGVLNFADLEVHALRALDHPP----VLEAYRARWR 343

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             L+DE QDT+ IQ E++  L  +             +  VGD KQ+IY F  A+ +   
Sbjct: 344 AFLVDEHQDTNPIQGEILERLFGEAP-----------VAVVGDRKQAIYGFRYADHRVFT 392

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                 + R      +   + L  ++R+ A +L  VD++      A+G        ++  
Sbjct: 393 GFVEEVKTR-----PRGRAVRLEANYRTQAPLLEAVDRL------AEGFLGPLHQPLQPT 441

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                      LW  V S      + ++                   ARR+A  +  ++ 
Sbjct: 442 RPAWNSPEPC-LWRLVFSGSLPSKDKERL--------------REAEARRVAQEVRTLLE 486

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                       ++  +I +L R        T           I  V      L +    
Sbjct: 487 KGLPDG-----PLRPGEIAILARTWNTLEPFTRALEAE----GIPAVSAGGGSLLETPEA 537

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           +D MAL  F+    DDL+ + +L+SP F   +  + ++   R +  + +E +Q       
Sbjct: 538 RDGMALLAFLADPRDDLALLTLLRSPYFAVPDAVLHRLAEGR-QAASWWEALQADGPEEP 596

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTL 537
                  + + EL                  A           G E        FL    
Sbjct: 597 ------RQMLEELRQKRSLLPSF-LLQEADLATGYTAVLAHLPGPERRLADYGAFLELVR 649

Query: 538 RNEQNSYS--SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             E        + + +  L +    + R        V++++VH AKGLE  VVFLV    
Sbjct: 650 GLEARGEGLWGVVDRLRTLARRRLELPRPPLGGLEAVQLLSVHAAKGLEWRVVFLVGLDR 709

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
           +         + + P       +       K    + ++L+K   +   EE  RLLYV +
Sbjct: 710 R--PAAPSPSLLLHPERGLGIRL------DKEPGGLYAELLKESLRGQVEEEARLLYVAL 761

Query: 656 TRASDQLIICK-------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           TRA D L++            T+ E+     ++ +++   +     + ++K   +   D
Sbjct: 762 TRARDLLVLSPGFGARHFWMTTAEEEFPRPPSFGELLGGCWERVWDLAQVKEREASPND 820


>gi|296328158|ref|ZP_06870689.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
            nucleatum ATCC 23726]
 gi|296154670|gb|EFG95456.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
            nucleatum ATCC 23726]
          Length = 1056

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 129/864 (14%), Positives = 276/864 (31%), Gaps = 137/864 (15%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            N + +  + +  +      +   E   +        +         L+  +   Y+  K 
Sbjct: 305  NKLKKASDAEHKEYINARHEELREI--LSKEIFNEVLIPYEEKIFELSSEIYNLYDSFKI 362

Query: 143  KNCVLDFEDLIINTN-------DLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWE 194
            ++    F D+ I T        + L+  +    I ++ +D  I  I IDE QDTS++QW+
Sbjct: 363  RDKKFTFSDIAIYTYMAIFNKNNALRDENGLTDIFFETLDMNIEAIFIDEFQDTSILQWK 422

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++   T+            +T+  VGDEKQSIY +   E +     + I + +       
Sbjct: 423  ILYEFTK----------KAKTVICVGDEKQSIYGWRDGEKRLFENLETILEAKED----- 467

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                 L  S+RS  +I++  ++ F   E                         ++ W+  
Sbjct: 468  ----SLDKSYRSDRNIVSYCNQFFKAIEK------------------------IEDWKFP 499

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
             S+ +S+ +   ++          E                 +  +T+     K      
Sbjct: 500  TSEVNSKNDGYVKAICIKDLQDKIEDEEQ----------KKELNINTVLLQELKNFEPYD 549

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            ++ ++ R   +   I  L    K    I  + N+   ++++  I +   L ++++  E++
Sbjct: 550  NVAIIARTNAELSEIANLLEDEK----IPYILNNEKNISEYSGIFECFELLKYLV-YENE 604

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETV--YEYIQKFANCGISKFQHVIKYIHELI 492
            L+    + SPL NF  ++I  +   + E  +   +     F N    K    ++ I  L 
Sbjct: 605  LALFNFISSPLSNFGTNEIEILLKNKKEVFSYINFSQDNNFINSLDKKIIRFLEKIVFLK 664

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
               +  +  D    I+   +    F      +    + +F              L+ L  
Sbjct: 665  KNYKKFTVQDLIFEIIKKFQFIDYFNKDNEVK---NIYDFYLLINYYSSI----LELLND 717

Query: 553  ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
               +         ++    V ++T+H +KGLE    F++    +  +        +    
Sbjct: 718  Y--KENKLSLSDTNSETKGVELVTIHKSKGLEFKTTFVIKNSKKSKTDDIDFLFEMNDKY 775

Query: 613  NDDPGIPIWIPQ-SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            +                     + I++  K  +EE     YV +TR  + LI+       
Sbjct: 776  DKTVFSLFCKKGYKPILKTCFEERIENYDKKIKEEEINNFYVALTRPKNNLIVI------ 829

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
                     + D +++    +E          + K      +  T       LE +    
Sbjct: 830  ---------YEDRLFEENPLNESNIDDFFNCELGKISLDEKKSKTEDIIEKNLENDLYNS 880

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
            Q      I +        ++NE   L                L   +    G+++H   +
Sbjct: 881  QSYFSSSIYENEEEIKNIEVNESKFL----------------LETEEKRMIGILVHYFFE 924

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSCDSYSEV 849
             +    E + +   T    K    +  ++   +    +I   L         S   +  +
Sbjct: 925  NLKYGTEEEVEFSKTLCYKKYLSYFGEEKLNKIFSKENIEMFLTKD--KEIFSKK-WDYI 981

Query: 850  SVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
                 +   ++      RID++ I         I+I ++KT                 QL
Sbjct: 982  YSEYILYDYEEKK--EYRIDRLMIKDNGNGTGEIYIVDFKTGGKN-----------QNQL 1028

Query: 905  SIYEKILKDSYP---NKSLVCLLI 925
              Y  +LK ++    N ++    +
Sbjct: 1029 DTYRDVLKKNFEELQNYNIKTKFL 1052


>gi|323694559|ref|ZP_08108725.1| UvrD/REP family ATP-dependent DNA helicase [Clostridium symbiosum
            WAL-14673]
 gi|323501327|gb|EGB17223.1| UvrD/REP family ATP-dependent DNA helicase [Clostridium symbiosum
            WAL-14673]
          Length = 1073

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 99/556 (17%), Positives = 164/556 (29%), Gaps = 145/556 (26%)

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y++      V DF+DL++ T  L K        R    +  +++L+DE QD + +Q+E+
Sbjct: 630  EYQKRLLAEGVCDFDDLLLETLKLFKSEPKKEIGR----RRFHYLLVDEFQDVNPVQFEL 685

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            IR            +S  R LF +GD  Q+IY F G +P      K+             
Sbjct: 686  IRLW----------NSGGRELFVIGDPDQAIYGFRGTDPACFEYLKKEYP--------SL 727

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
              I L  ++RS   IL     V S+    +                         W+   
Sbjct: 728  KEITLNKNYRSVPAILEGAQAVISVNPGQR-------------------------WKLEP 762

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI---- 371
               +                L    S    A   A  I+ +IG   +    +KRV     
Sbjct: 763  VCTEGSPI-----------RLVTAESVRAEAIFTAKEINRLIGGIDMLDAQEKRVTGRLS 811

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               DI VL R  +    +    R       I      R       A++  ++  R +L+ 
Sbjct: 812  GFSDIAVLYRTHRQAAFLETCLR----KEGIPYRVAGRDDFLADTAVRGSVSFFRSLLNG 867

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            E+                                + + +      G  +     +     
Sbjct: 868  EERF---------------------------LAKLCQRLLWNGMDGPEREAAFERAAKTY 900

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
              +     P+D     +              N+ ++ L +            Y +++E  
Sbjct: 901  SLLMIKEKPYDILDKWIAD--------QNLDNQNMEKLRQL--------SGMYRNMKEFT 944

Query: 552  SELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              L    +             + V +MT+H +KGLE PVV L      +           
Sbjct: 945  DALAFGTEGDLIRPGKKQYRSDAVTLMTMHASKGLEFPVVILCGVRKGLIP--------- 995

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                     +      +  +EE  RL YVGMTRA +QLI+    
Sbjct: 996  ------------------------LETKGQSGEKDKEEERRLFYVGMTRAKEQLILVTDR 1031

Query: 669  NTSNEKKSNQRTWYDM 684
              S        T  + 
Sbjct: 1032 EQSEFLNVLPETCLER 1047


>gi|291556316|emb|CBL33433.1| Superfamily I DNA and RNA helicases [Eubacterium siraeum V10Sc8a]
          Length = 767

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 104/546 (19%), Positives = 178/546 (32%), Gaps = 116/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y  A     ++D++D ++   ++L+K      I    +    +I +DE QDTS I
Sbjct: 178 RIYREYNLALSSRSLMDYDDQMVTALEILRKYPD---ILAYFNGRFRYICVDEAQDTSKI 234

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E+IR L                +F VGDE QSIY+F GA P+ ++  ++  +      
Sbjct: 235 QHEIIRLLAA----------KSGNIFMVGDEDQSIYAFRGAYPEALIDFEKTYKN----- 279

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I+ +  +FRST +I+ V D         +  +  +         + G    +   
Sbjct: 280 ---AQILFMEQNFRSTPEIIGVADSFVKCNRFRREKTIRAVN-------KSGIPVRIVRC 329

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           E+  +Q              +   +   +     A                         
Sbjct: 330 ERRNAQ------------YDFLCGIAARNEQQTAA------------------------- 352

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILS 430
                  L R      ++  +         I                + D+  + RFI +
Sbjct: 353 -------LFRNNDSAVVLVDMLE----RNNIPYRLKGGEKTFFTSRPVLDITEIIRFINN 401

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIF---KICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
             D  SF+ +        ++       KI  QRH T T                +  I+ 
Sbjct: 402 PYDIDSFMAIYYKIGLYITKQTAEAACKISLQRHITITDALLGIDTGTQISVNSKRNIQQ 461

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +L+  AQ  S  +  ++IL   +    +  + G      LDE     LR    + +S 
Sbjct: 462 TAQLMRQAQSSSATEVLSIILHGMQY-ADYAHKNG------LDENKYDILRMLARNVNSS 514

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            ELI  L +    +      + ++  + TVH++KGLE   V+L+D    V          
Sbjct: 515 AELIDRLSELSGIMAEHKDDSFSKFTLSTVHSSKGLEYDCVYLLDVIDDVLP-------- 566

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                      L         EE  RL YV +TRA  +L +   
Sbjct: 567 ---------------------CITKDKLNDKEDIKQYEEERRLFYVAVTRARKELYLFSC 605

Query: 668 SNTSNE 673
              S+E
Sbjct: 606 KGESSE 611


>gi|237740557|ref|ZP_04571038.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 2_1_31]
 gi|229422574|gb|EEO37621.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 2_1_31]
          Length = 1046

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 149/946 (15%), Positives = 291/946 (30%), Gaps = 157/946 (16%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ-QASQTQCIEER 65
            LSLN++ E I K+   +    V  + +  S  +E      L        +    +  E +
Sbjct: 226  LSLNDNKEYIKKEKLSIDEKPVEILRELFSY-LENDAKKDLNDVLKNDCKIYLGKTPETQ 284

Query: 66   FSLLS--SFFLTQKFTPQKNIITQEINKK-SPDLKEKLKKSQDEFIK-IRDRFNTYKMFK 121
              LL   + F  Q  T        ++ K    + KE L   Q+   + +        +  
Sbjct: 285  RELLVRNANFFFQDGTAGLIYNGNKLKKATDKEYKEYLISRQEILKENLAKEVYNEILIP 344

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND--------LLKKRDVSAWIRYKI 173
                   L+  +   Y+  K ++    F D+ I T          L+ +  ++      +
Sbjct: 345  YEEKIFELSLEIFRLYDMFKIRDKNFTFNDIAIYTYIAIFNKENGLMNENGLTDIFFESL 404

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            D  I  I IDE QDTS++QW+++   T+            + +  VGD+KQSIY +   E
Sbjct: 405  DMNIETIFIDEFQDTSILQWKILYEFTK----------KAKIVVCVGDDKQSIYGWRDGE 454

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
             +     + I +              L  S+RS  +I++  ++ FS              
Sbjct: 455  KRLFENLETILKANPD---------TLKKSYRSDINIVSYCNEFFSAIS----------- 494

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                             W    S+ +S+     ++             + +L    A+  
Sbjct: 495  -------------RKDNWAFKPSEINSKNQGYVKAICMSDLDKEANIYSVLLEELKAFE- 540

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                                 ++ ++ R   +   I  L    K    I  + N+   ++
Sbjct: 541  ------------------PYDNVAIIARTNNELNEIAQLLENEK----IPYILNNEKNIS 578

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
            ++  I +   L ++++  E++L+    + SPL N    DI  +   + E  +   + Q  
Sbjct: 579  EYPGIFECFELLKYLI-YENELALFNFISSPLSNIGTKDIEVLLKNKKEVLSYINFSQDN 637

Query: 474  ANC---GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                     K  + +  I ++    +     +    I+   +    F      +    + 
Sbjct: 638  NFILSLENKKIINFLNKIIDIKKNFKNFKVQNLIHEIIKKFQFLDYFSKENEVK---NIY 694

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            +F   T        S L  L          I    ++N   + ++T+H +KGLE    F+
Sbjct: 695  DFYLLTNSY----LSVLDLLNDY--NDNKLILADLNSNKKGIELVTIHKSKGLEFKTTFV 748

Query: 591  VDTGSQVFSHK-HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +    +      +               +           +   D +    K  QEE   
Sbjct: 749  IKNDKKSKGFDINFLFEMNETYDKTTFSLFAKKGYKNILKSCFEDKVLEYIKKIQEEETN 808

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
              YV +TR  + L+I  +     EK        D          R  +I           
Sbjct: 809  NFYVALTRPKNNLVILYNDRLFEEKPLENSNLKDFFSCEIGEIHRNIEII---------- 858

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                             E    + +        L S I+N+           ID    +N
Sbjct: 859  -----------------EVETPKEISYNSSSYFLNSNIENE----------EIDNFEVSN 891

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LS 827
             + LL   +    G+++H   + +    E +          K    +  K+   +    +
Sbjct: 892  SKFLLETEEKRMIGILVHYFFENLKYTSEEEVAFAKNLCYKKYLSYFGKKKLDEIFSKEN 951

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFE 882
            I   L         S   ++ +     +    +      RID++ I         I+I +
Sbjct: 952  IEMFLNKD--KEIFSKK-WNYIYNEYVLYDAIEKQ--EYRIDRLMIKDNDDGTGEIYIVD 1006

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY---PNKSLVCLLI 925
            YKT                 QL  Y  +LK ++    +  +    +
Sbjct: 1007 YKTGGKNEN-----------QLKTYASVLKKTFKELKDYEIKTNFL 1041


>gi|328552941|gb|AEB23433.1| ATP-dependent DNA helicase, uvrD-like protein [Bacillus
           amyloliquefaciens TA208]
          Length = 598

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/545 (16%), Positives = 173/545 (31%), Gaps = 128/545 (23%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            +     YE  K KN + D++D ++    +LK          K       IL+DE QD++
Sbjct: 154 LRLFYKEYEAFKSKNGLYDYDDYLLECYKVLKNN--------KHKYTYEFILVDEHQDSN 205

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L+Q  +++ L                +F + D +Q+IY+F G   +  +  ++  +    
Sbjct: 206 LVQNLILKELCA-----------SGNIFCLFDYRQAIYTFRGGNTEYCMEFEKDWEN--- 251

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 ++I L  ++RS  +I+   +              D         +         
Sbjct: 252 -----ATVINLDTNYRSNKNIVDNANSFIK------EYYGDYEHYADSVPNIHNNGDIQT 300

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L  Q                                    A  I  ++            
Sbjct: 301 LTYQDREAEGLNT---------------------------ADKIETLLKAGE-------- 325

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  +I VL R    +  +    +      +I     +         +K ++A  R I 
Sbjct: 326 --KPSEICVLYRLNSHSSYVENELK----RREIEYDITNNGSFFKRKEVKGIVAYLRLIR 379

Query: 430 SQEDDLSFVCML---KSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGISK---FQ 482
              DD +F  +      P   FS  ++  + +   +   ++YE +        ++     
Sbjct: 380 DPHDDAAFRDIFTLRNDPFRYFSNKNLKDVESFAGQTNMSLYEAMLNMRFDRPTQNDNVL 439

Query: 483 HVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNE 540
                I++L        +  +    ++   +            + I    E LN   +  
Sbjct: 440 KFQSMINKLQMQVLKGIAVEELIDNVVKTFRMNDYIEEKYLDEDEITDRKESLNTMKKFV 499

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +N+  +L++ I+ +    P+ K+    N N VR+M++H +KGLE   VFL+      F H
Sbjct: 500 KNN--NLEQFINFVYGSKPSKKK----NENAVRLMSIHASKGLEFKHVFLIGVEDGKFPH 553

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +KS   +  RL YVG+TR  +
Sbjct: 554 ---------------------------------------RKSDLLDEARLFYVGVTRPKE 574

Query: 661 QLIIC 665
            L + 
Sbjct: 575 SLYLS 579


>gi|320008691|gb|ADW03541.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 1174

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 115/796 (14%), Positives = 220/796 (27%), Gaps = 120/796 (15%)

Query: 38  SMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            +          A+ L++A          F  L S  L       ++++      +  +L
Sbjct: 144 RLLADATRYQLAARVLREAPGPYPALTRSFPTLVSDLLALDAELAEHLV------RPEEL 197

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            E   +        R      +    T  +      L   Y  AK+   +LDF D I  +
Sbjct: 198 LEYDTELLRGLETARLTNAELRKIPETAGARRELLGLTRRYRTAKRSRDLLDFGDQIALS 257

Query: 157 NDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            +L L + +V   +R +       +L+DE QDTS+ Q  ++      F  G    ++   
Sbjct: 258 AELALTRPEVGTLLRDE----FRVVLLDEYQDTSVAQRLLL---AALFGGGGGDGTAGHA 310

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           + AVGD  Q+IY + GA    +              G   +   L  + RS   +L + +
Sbjct: 311 VTAVGDPCQAIYGWRGASVANLDDFPHHFP---HADGTPATRYSLSENRRSGGRLLHLAN 367

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +                       R    G   L     ++ D        +  +    
Sbjct: 368 GL-------------------AEPLRAMHEGVEALRPAPGAERDGTVRCALLATHAE--- 405

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                        +  ++++++ T T             +I VL R   D P I      
Sbjct: 406 ---------EIDWLGDSLAHLVRTGTA----------PGEIAVLCRTAGDFPRIQAALVA 446

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 I V       L     + DL+A+   +     + S V +L  P +     D+  
Sbjct: 447 ----RDIPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLAL 502

Query: 456 ICTQRH------------------------------------------ETETVYEYIQKF 473
           +  +                                            E+    +    F
Sbjct: 503 LGRRARVLVHRTAPGDEDTDPDRRLADAVEGTDPAEVISLADALDTFLESGGAEDDRLPF 562

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLD 530
           +     +F  +   + +L   +      D    +L       +  +          + L 
Sbjct: 563 SAEARVRFARLATELRDLR-RSLADPLMDVLHRVLATTGLEVELSASPHALAARRRETLA 621

Query: 531 EFLNFTLRNEQ-NSYSSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLESP 586
            FL+        +  ++L   +  L            A     N V+++T H +KGLE  
Sbjct: 622 NFLDVAAGFAAVDGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWD 681

Query: 587 VVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           VV +       F     +        ++P         + +  +     + +     +K 
Sbjct: 682 VVAVPGLVGGQFPSTRSRDAWTSQSQVLPHALRGDAPTLPVLDTFDARGL-AAFKAEMKG 740

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
               E  RL YV  TR    L+   H    ++KK    + +             +     
Sbjct: 741 HQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSVFLDALYEHCAAGHGEIEVWA 800

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
           +   +DE           +  PL  ++T        +               P  + P  
Sbjct: 801 DEPGEDEENPALRDEGADQPWPLPLDDTAMARRRAARDTVLAHLEALAAAPVPDTV-PEE 859

Query: 762 IDTKGKTNLESLLSDN 777
                         + 
Sbjct: 860 YGRTAPGGRPRPAHEP 875



 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 61/232 (26%), Gaps = 24/232 (10%)

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
              +       +    +   + +    +L   +   + +  P      +   L        
Sbjct: 937  PADAALTPEESRTLASWDRDLDALAGELRRARAAVRDVVVPATLSATQLLHLADDPEGFA 996

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
             +              RG   H  ++        + +         +      +    + 
Sbjct: 997  RELARPMPRPPQPAARRGTRFHAWVE-------SRFEELPLPMLGPDELPGGDENDAEIA 1049

Query: 826  LSITRLLENPMMTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
                   +   +  A    SY+      V           +I GRID +  +     I +
Sbjct: 1050 DE----RDLAELKEAFERTSYARRTPHGVEIPFQITLAGRVIRGRIDAVYRTGDTYEIVD 1105

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKV 932
            +KT  H   +          QL++Y     + +  P +++    +YV   + 
Sbjct: 1106 WKTSRHRTADP--------LQLAVYRLAWAELHGLPLEAVAATFLYVRTGET 1149


>gi|284047260|ref|YP_003397600.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
 gi|283951481|gb|ADB54225.1| UvrD/REP helicase [Conexibacter woesei DSM 14684]
          Length = 1052

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 122/1001 (12%), Positives = 268/1001 (26%), Gaps = 173/1001 (17%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +       L      +       V++        +L++   L    +        + L +
Sbjct: 83  TVHGFCARLLREEALEGGIDPFAVAVGRADRLAMLLERIDELT--IRRHDFRGNPAALVA 140

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
            F+      ++    ++      +     +    +     D        +   A      
Sbjct: 141 SFV------RRIDRLKDELIGPEEYAAWAESLGADGDDASDAERARGAREREFA------ 188

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   ++    +   LD  DL+I    LL+       +R ++     H+L+D+VQ+ +  
Sbjct: 189 EVYRAHDRMLAEQGALDSGDLVIGALRLLRDHPH---VRARVAARYRHLLVDDVQEPNFA 245

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
              ++R L  +             L A GD+ Q+I  F  A  K +   +          
Sbjct: 246 HGLLLRLLASE----------HGNLTAAGDDDQAIQRFRAAATKNLRDFQAELP------ 289

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               ++++L  SFR    +L   + V +  E+      D               G V  W
Sbjct: 290 --DATVVQLEHSFRCPQRVLDAANAVVAPLEDRIEKRLDGP-----------LGGEVAFW 336

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                       ++    A+ +A  +  +IG +          +
Sbjct: 337 R--------------------------SANERAQAQSVAADVERLIGRE---------GV 361

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             + I VLVR                 +  +               ++DL+A  R ++  
Sbjct: 362 PPERIAVLVRS---IAREGQAVAVALEERAVGHRLIGEAAFFQRAEVRDLLAWLRLLIDP 418

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D  + V  L  P       D+ +        +         A             I   
Sbjct: 419 ADAPAVVRALARPPIELRSVDLARCTQIARRRKLDMVGALGAALESPQIPPEARDRIRMF 478

Query: 492 IHI-------AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD---EFLNFTLRNEQ 541
           + +            P  F   ++     R+Q +     EV++ L     F        Q
Sbjct: 479 LGLYRSAVGAIDTMRPDLFVHRLIERLGLRRQQLFTAQAEVVERLRGLARFGELATAFTQ 538

Query: 542 NSY-SSLQELISELEQYPPTIKRAHSANHNE----VRIMTVHTAKGLESPVVFLVDTGSQ 596
               ++ +E    +        R            V++M++H A+GLE   VF++   + 
Sbjct: 539 RQPQATPREFARSIAAAAEAGLREEEEPPPATTRGVQVMSMHAAQGLEFDHVFVLGLHAA 598

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS----------------------------- 627
                H + +  +        +P    ++                               
Sbjct: 599 GLPGAHTRTLEPIAPALMKETLPEDDHEAHVAEMRRLLHVAMTRSRQRLVLVHPQASDRG 658

Query: 628 ----RNNIVSDLIK------HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                +    +           +          L+       D+L+       S   +  
Sbjct: 659 AAQPPSPFAEEARAAVGGVWEERAEELFGPAESLHSTYRILRDELLETIKRTGSRIGELR 718

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE--------- 728
             T  D+ +      E VK   L    +           +    + +  E+         
Sbjct: 719 FDTDLDVSHAIVRYLEVVKLAALIERSDDQSVKDALAEVNARLASAITSEQRDILATSPL 778

Query: 729 -----TIKQLMDEQKIPKKLFSPIKNDINEPYI-----LNPSTIDTKGKTNLESLLSDNQ 778
                   +    +            +   P       L+ S IDT     L+   +   
Sbjct: 779 DEYLLDADRDDRTRAAAIAAREEPSLEPFLPRRGDGVMLSASDIDTYRTCPLKYKFARVF 838

Query: 779 TF--------NRGLIIHKLLQVIFTLP--EHKRKNFITSYCTKNAKLWPAKEYKNLLL-S 827
                       G+++H++L+   + P    +  + +        +       +  +   
Sbjct: 839 RIPQEPTLNQRFGILVHQVLERFHSDPSRPSQSLDEMLGLLEFGWRRGGFGGTEQEIQLR 898

Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTH 886
                           +    V+     +      ++ GR+D++    +    + +YKT 
Sbjct: 899 GKATAALTRYFERFQEEPSQPVAFERSFSFRLGPHLLRGRVDRVDKLPEGGFELIDYKTG 958

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
              P+    +      QLS+Y    ++++  +S      YV
Sbjct: 959 --PPKSRAQLEQD--VQLSLYAVAAREAWQFESARGAYYYV 995


>gi|323139776|ref|ZP_08074812.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
 gi|322394980|gb|EFX97545.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242]
          Length = 687

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 108/688 (15%), Positives = 199/688 (28%), Gaps = 127/688 (18%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I  +        +++   +       G   +   A    L       
Sbjct: 68  RRAAAEMTRRVERICAEALGASAGILTNGLAWAGTFNGVGARLLRDYAGEIGLTPDFTIH 127

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F+  +    T+        +  +    +     + +       
Sbjct: 128 DREDAADLMNLVRHGLGFSKTESRFPTKGT---CLAIYSRAVNEELPLDDVIE-----GC 179

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           F          + L A Y EAK+   VLD++DL++     L +  ++  I        +H
Sbjct: 180 FPWCAGWSAQLRQLFAAYVEAKQTQNVLDYDDLLLYWAQTLGESALAEDI----GGRFDH 235

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++ ++              R L  VGD+ QSIYSF  A  + +L 
Sbjct: 236 VLVDEYQDTNRLQSSILLAM----------KPDGRGLTVVGDDAQSIYSFRAATVRNILD 285

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                            I+ L  ++RST  IL   + V  +       +           
Sbjct: 286 FPAAFS-------PPADIVTLDRNYRSTRPILAAANCVIELASERFTKN----------- 327

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW +  S    +     +                  AR +   +      
Sbjct: 328 ----------LWTERQSGGKPRLVTVPDEGDQ--------------ARYVVERVLEDREI 363

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T          + K   VL R    +  +            I  V        D   +K
Sbjct: 364 GT----------RLKQQAVLFRASHHSGPLELEL----TRRNIPFVKFGGLKFLDSAHVK 409

Query: 420 DLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           D++AL RF  +  D ++   +++  P    +                             
Sbjct: 410 DMLALLRFAQNPRDRVAGFRLMQLLPGVGPASAQRVLDLMAEQPDPLSSLSDIPAPPRSG 469

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +   ++ +  L               I  A++  +  + R   +    L + L     
Sbjct: 470 DDWTGFVEVLQYLRSGKAGWP-----AEIASARRWYEPHLERIHEDAATRLADLLQL--E 522

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
                Y S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++  
Sbjct: 523 QMAAGYPSRERFLTELTLDPPDATSDQAGAPLLDEDYLILSTIHSAKGQEWKSVFVLNVV 582

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                    +     +  EE  RLLYV 
Sbjct: 583 DGCVPSD----------------------------------LGAGTTAEIEEERRLLYVA 608

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWY 682
           MTRA D L +          +  Q   +
Sbjct: 609 MTRAKDSLHLITPQRFFTHGQHPQGDRH 636


>gi|297571780|ref|YP_003697554.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932127|gb|ADH92935.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 1156

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 131/1010 (12%), Positives = 271/1010 (26%), Gaps = 226/1010 (22%)

Query: 84   IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
            +  +   K +PD     +   D   K   R    K  +S    L         Y   KK+
Sbjct: 218  LAPRMSAKTTPDKGSVERSFYDRAAKAFTRATVVKSLESRYQLLDSV----EAYFAKKKE 273

Query: 144  NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              +++F D +     ++++    A +R  + +    +L+DE QDTS+ Q   ++++  + 
Sbjct: 274  LGLIEFADQVSWATRIVEQ---VADVRESLQKAFPVVLLDEYQDTSVNQARFLKTVFAN- 329

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                      R++ AVGD  Q+IY + GA         R  Q            + L  +
Sbjct: 330  ---------ARSVTAVGDPNQAIYGWRGASANAFPDFVRDYQVPNEAQ------LSLTQA 374

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            FR++  IL   ++V         LS  + +  + R       G V               
Sbjct: 375  FRNSTSILNAANRV-----TQGKLSYGNLSIKQLRPGPNAGGGEV--------------- 414

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                              A+   + +A  +   +                    +LVR  
Sbjct: 415  -----------VRVHRHYAADTYQALACRLKQELQGSESQ--------TPPTAAILVRNH 455

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                              I         L     ++ + +L   + + + +   + +   
Sbjct: 456  S----FENAAIEALEAEGIPYEVIGGKSLIVRPEVRVVRSLLELLANPDRNDQLIYLFN- 510

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV------------------- 484
              F     DI        E                S                        
Sbjct: 511  -FFGLGVQDIRAFSAIAKEHAHGEREQLLARIRVKSSAAEAEKIAHDLQRPDVRLIDSLM 569

Query: 485  ---------------IKYIHELIHIAQFCSPHDFFTLI-----LGAKKGRQQFISRFGNE 524
                           I+++  L+   Q         L+     L          +  G  
Sbjct: 570  GNHNFTELSSDGQRRIQHLASLVDSLQQYRHAGLNNLVSAAIDLLDLPVYAASRAHGGAA 629

Query: 525  VIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIK-------------RAHSANHN 570
            V   L  F++     + ++  +++   +S L+                       S    
Sbjct: 630  VRAALAGFVSLAGDYQADNPYATVAGFLSWLDLMEARDHSGEAAAAIDSSLGEDISPAAG 689

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFS--------HKHIKKMHIMPSLNDDPGIPIWI 622
             V+I+TV+ AKGLE  +V + +  S+ F             K++   P   D   +P + 
Sbjct: 690  IVQILTVNAAKGLEWDIVAIPEMVSKRFDYVKRAYPFWHKSKEIFPFPLRADSEHVPCYS 749

Query: 623  PQSKSRNNIVSDLIK-----------HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             Q    ++      +            ++  + +E  RL YV  TR    L++  +    
Sbjct: 750  AQDFDNDDDPHAAKRDALIRYGEYDQEIRTHSGDEERRLAYVAFTRPRSLLMLLTYDIRD 809

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
              +   +             +    +  L  S    + +   + T      P  +   + 
Sbjct: 810  VAEAEKKYQAVCERPAETSEENDTVQNPLYFSNVFIDDLEGTYITDDGYEEPFTQVSDVI 869

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK------------------------ 767
            +   EQ +     + I    +E  +L P  +D                            
Sbjct: 870  RWGKEQGLSLVKSTAISTSPSEVAVLWPDHVDRTVDKQANTAQIDHVTEEALCEAWNETY 929

Query: 768  TNLESLLSDNQTFNRGL------------IIH-------------------------KLL 790
              LE     ++   RG+            ++H                          + 
Sbjct: 930  LRLEEERMVHKATIRGVERGYLTASDVVALMHDADKFFRDQRRPVPQPIMAASRTGTAVH 989

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWP-AKEYKNLLLSIT-RLLENPMMTTAMSCDSYSE 848
            + I    E      I S    +        +  +    +     E        +      
Sbjct: 990  EAIAHYFEAPLTLDIDSVLEPDQMPIDMDMQISDERQRVLIERFEQSRFAGLPA------ 1043

Query: 849  VSVSGKINCPKKDIIISGRIDQISIS---QQN--IFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            +++   +        +   ID +  +        + I ++KT  H       +  +   Q
Sbjct: 1044 LAIEQPVEIHLAGYPVRCVIDAVLDTSSIPGCLPVTIVDWKTGRHPSD---ELVKSRELQ 1100

Query: 904  LSIYEKILKDSY--PNKSLVCLLIYV-------SEPKVFIIPQNKLNKAF 944
            L +Y      ++  P   +     Y+        E     + + ++ +A 
Sbjct: 1101 LGLYRLAWSRAHNVPLSDIDACFYYLGEENSNARELHAGELSEGEIERAI 1150


>gi|314927514|gb|EFS91345.1| UvrD/REP helicase [Propionibacterium acnes HL044PA1]
          Length = 1066

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 116/953 (12%), Positives = 265/953 (27%), Gaps = 105/953 (11%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEERFSL 68
           +     P      + + + ++ + +E    T+   A+ +      +  +  +       L
Sbjct: 52  VLAQTRPSAQALRTALVRRLAGAHLEPQVMTVHALARRIVASPSRRLLTAPEQEFRMREL 111

Query: 69  LSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L++  ++      +    T +       +  +L++   +   + D   T+ + +      
Sbjct: 112 LAARDMSDWPDELRTCAGTAQFASDVRVMAARLRQEGCDPQDLTDAGVTWGVPE-----W 166

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +     A Y +       LD+ + +      L +      +R      I  ++ D+V +
Sbjct: 167 RVLGPFLADYLDVLDLEGTLDYAEAVHRARIALTRPGADIEVR----SRIKLLICDDVVE 222

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
               Q   +  +                     D  Q+IY F GA  +R+          
Sbjct: 223 CDSSQIRFLSQIARC----------HIPCVLTADPDQTIYGFRGAVAERLDEVIDEFP-- 270

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG---- 303
                   S+  L  ++R++  I  VV+ + +        S+          +  G    
Sbjct: 271 ------DVSVHHLATNYRNSQHIAEVVESLRTRMPAVPSSSQLRRRANHSAVTEDGTVAA 324

Query: 304 --QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT----ISNMI 357
                  +L  ++             +W +            I+A  +A      + +  
Sbjct: 325 VRAPSMTRLVRKIAGTLRHAHVADGVAWRNMAVVTRHGGELGIIATVLAAEDIPVLRSRD 384

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                  N    ++ A  I V +   +        T        I      R      L 
Sbjct: 385 EHALSDINAVTHIVNALAIAVALASGRQPSDRDVATLLSNPLAGIDRSLVHRLETWCRLV 444

Query: 418 I---KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                D   LG         ++     + P    S  ++     +  +  +   +     
Sbjct: 445 RGIDIDWPLLGELGADPMAAVAAERGNERPEDG-SRAEVDGRAEEAGKEGSETAHEAYSV 503

Query: 475 NCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISR---FGNEVI 526
             G+      +  + + +  A        S H+    +           SR     +   
Sbjct: 504 PPGLRALAQPLAMMVQRVQRAADLLRSDASCHEALWALWQGSSWTSSLRSRALAGDSAAD 563

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTA 580
             LD   +     +     +       L      EQ P    R    + + V ++T H  
Sbjct: 564 RDLDGLCSLFDMADGAQTMAGIAGARRLIEVVRQEQIPADRARESDEDRDGVSVVTAHRV 623

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KG E  VV +       +   +     +         +      S               
Sbjct: 624 KGREFDVVAVCGLEEGNWPADNHTGSLVRADRWSPDSLVAAPGWS--------------- 668

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                   RLL V  +RA  QL++C   +    ++ S        V D   +       +
Sbjct: 669 -ENLRAETRLLLVACSRARRQLLLCTVESAEEGKRPSGLVAGLPHVEDHVDSLNFTSLTE 727

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQ-------LMDEQKIPKKLFSPIKNDIN 752
           L   + +      E      E   L  +  +++          +        +P + D+ 
Sbjct: 728 LVGELRRVVVDNSELPGVRAEAQALLDDLRVEKHRGRQLVPQADPSTWWCQGAPHQADVA 787

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKL-LQVIFTLPEHKRKN 803
               L+ S I           ++             + G ++H++  + +          
Sbjct: 788 GEIELSASHIGELLTCPRRWFMTRRAGASSGSAFQASIGSLVHRICAENMGHWSLPGALT 847

Query: 804 FITSY---CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
            +          A+     +  +   ++ R   +  + +       +EV V G I  P  
Sbjct: 848 ELEEAWPEIDVTAEWQRNAKLADAKAAVQRF--DGWLQSRHRQLIGTEVRVDGTIEVPSG 905

Query: 861 DIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
              + G ID++    +   ++ + KT      + E    +H  Q+ +Y+ ++ 
Sbjct: 906 TARVRGSIDRLERDAEGACYVVDLKTGA---SQSEETKRSHRLQIGVYQAVVA 955


>gi|323487050|ref|ZP_08092359.1| UvrD/REP helicase [Clostridium symbiosum WAL-14163]
 gi|323399641|gb|EGA92030.1| UvrD/REP helicase [Clostridium symbiosum WAL-14163]
          Length = 1073

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 98/556 (17%), Positives = 162/556 (29%), Gaps = 145/556 (26%)

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y++      V DF+DL++ T  L K             +  +++L+DE QD + +Q+E+
Sbjct: 630  EYQKRLLAEGVCDFDDLLLETLKLFKSEPKKEI----GKRRFHYLLVDEFQDVNPVQFEL 685

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            IR            +S  R LF +GD  Q+IY F G +P      K+             
Sbjct: 686  IRLW----------NSGGRELFVIGDPDQAIYGFRGTDPACFEYLKKEYP--------SL 727

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
              I L  ++RS   IL     V S     +                         W+   
Sbjct: 728  KEIALNKNYRSVPAILEGAQAVISENPGQR-------------------------WKLEP 762

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI---- 371
               +                L    S    A   A  I+ +IG   +    +KRV     
Sbjct: 763  VCTEGSPI-----------RLVTAESVRAEAIFTAKEINRLIGGIDMLDAQEKRVTGRLS 811

Query: 372  QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               DI VL R  +    +    R       I      R       A++  ++  R +L+ 
Sbjct: 812  GFSDIAVLYRTHRQAAFLETCLR----KEGIPYRVAGRDDFLADTAVRGSVSFFRSLLNG 867

Query: 432  EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            E+                                + + +      G  +     +     
Sbjct: 868  EERF---------------------------LAKLCQRLLWNGMDGPEREAAFERAAKTY 900

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
              +     P+D     +              N+ ++ L +            Y +++E  
Sbjct: 901  SPLMIKEKPYDILDKWIAD--------QNLDNQNMEKLRQL--------SGMYRNMKEFT 944

Query: 552  SELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              L    +             + V +MT+H +KGLE PVV L      +           
Sbjct: 945  DALAFGTEGDLIRPGKKQYRSDAVTLMTMHASKGLEFPVVILCGVRKGLIP--------- 995

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                     +      +  +EE  RL YVGMTRA +QLI+    
Sbjct: 996  ------------------------LETKGQSGEKDKEEERRLFYVGMTRAKEQLILVTDR 1031

Query: 669  NTSNEKKSNQRTWYDM 684
              S        T  + 
Sbjct: 1032 EQSEFLNVLPETCLER 1047


>gi|328912270|gb|AEB63866.1| UvrD/REP helicase [Bacillus amyloliquefaciens LL3]
          Length = 598

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 90/545 (16%), Positives = 173/545 (31%), Gaps = 128/545 (23%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            +     YE  K KN + D++D ++    +LK          K       IL+DE QD++
Sbjct: 154 LRLFYKEYEAFKSKNGLYDYDDYLLECYKVLKNN--------KHKYTYEFILVDEHQDSN 205

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L+Q  +++ L                +F + D +Q+IY+F G   +  +  ++  +    
Sbjct: 206 LVQNLILKELCA-----------SGNIFCLFDYRQAIYTFRGGNTEYCMEFEKDWEN--- 251

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 ++I L  ++RS  +I+   +              D         +         
Sbjct: 252 -----ATVINLDTNYRSNKNIVDNANSFIK------EYYGDYEHYADSVPNIHNNGEIQT 300

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L  Q                                    A  I  ++            
Sbjct: 301 LTYQDREVEGLNT---------------------------ADKIETLLKAGE-------- 325

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  +I VL R    +  +    +      +I     +         +K ++A  R I 
Sbjct: 326 --KPSEICVLYRLNSHSSYVENELK----RREIEYDITNNGSFFKRKEVKGIVAYLRLIR 379

Query: 430 SQEDDLSFVCML---KSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGISK---FQ 482
              DD +F  +      P   FS  ++  + +   +   ++YE +        ++     
Sbjct: 380 DPHDDAAFRDIFTLRNDPFRYFSNKNLKDVESFAGQTNMSLYEAMLNMRFDRPTQNDNVL 439

Query: 483 HVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNE 540
                I++L        +  +    ++   +            + I    E LN   +  
Sbjct: 440 KFQSMINKLQMQVLKGIAVEELIDNVVKTFRMNDYIEEKYLDEDEITDRKESLNTMKKFV 499

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +N+  +L++ I+ +    P+ K+    N N VR+MT+H +KGLE   VFL+      F H
Sbjct: 500 KNN--NLEQFINFVYGNKPSKKK----NENAVRLMTIHASKGLEFKHVFLIGVEDGKFPH 553

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  +KS   +  RL YVG+TR  +
Sbjct: 554 ---------------------------------------RKSDLLDEARLFYVGVTRPKE 574

Query: 661 QLIIC 665
            L + 
Sbjct: 575 SLYLS 579


>gi|237752329|ref|ZP_04582809.1| helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375818|gb|EEO25909.1| helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 897

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 135/863 (15%), Positives = 272/863 (31%), Gaps = 189/863 (21%)

Query: 82  KNIITQEINKKSPDLKEKL--KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           K  +T+   ++     +    +   ++  +        +  K   A   + +      E+
Sbjct: 214 KTWLTKATLQEYRGFSKIPFNQSDFEQLKQCVIYTLKQRESKYLDALFAIFQSYLIAKEQ 273

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY-KIDQEINHILIDEVQDTSLIQWEVIRS 198
             K N  L F  +    + LLK+  VS    Y ++D  ++HILIDE QDTS++Q+ +++ 
Sbjct: 274 FYKNNNTLSFNAVTSKVHTLLKEGLVSKDFLYFRLDSTLSHILIDEFQDTSILQYSILKP 333

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L ++   G    +  R+ F VGD KQSIY F G  P+               A      +
Sbjct: 334 LIDEIKAGVGQKNFTRSFFYVGDIKQSIYRFRGGNPEL-----------FKIASSGMQQL 382

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L  ++RS+  ++  V++ F                   ++ +    G V +        
Sbjct: 383 NLKHNYRSSISVVEFVNQTFKKV----------IENFIPQTPKSSSKGFVSV-------- 424

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                              +      L + +  T+  +              I+   I +
Sbjct: 425 -------------------KSYEKDTLYQGVLETLQKLKAKG----------IKEDSIAI 455

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           LV   K           L  +    VV +    L +H  ++ ++    FI          
Sbjct: 456 LVFDNKAV----VELSQLLQEQDYKVVIDTSAKLVNHNEVRAILEFLNFI---------- 501

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
                     +++++ K             +         S F+  ++ I          
Sbjct: 502 ---------ITQNNLHK-----------NAFFMLLGLKMDSAFETFVQSIQGFKA----- 536

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
            P      I+         I+           +FL  TL        SL EL+  +E+  
Sbjct: 537 -PAQMILKIMEHYN-----IASLSA------KKFLESTLEY-----HSLMELLENIEKKS 579

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
             I  +  +    +RIMT+H +KGLE   V +VD  +   + +         +  D   I
Sbjct: 580 LDIVSSDISG---IRIMTIHKSKGLEFENVLIVDKSNHNNARRSKIFFEFDENGVDIKHI 636

Query: 619 PIWI-PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
             +  P  ++ +   ++ +   K    ++    LYV +TRA + + I        +    
Sbjct: 637 FQYSNPVRQNLDFTYANALTKEKVLETKDLKHQLYVALTRAKETMHIL-------KLSEQ 689

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                  + DS +   +VK     ++ N   +          EN   +R+         +
Sbjct: 690 GAFVDLSLEDSTYGVLQVKSQSEISTQNNASFYHITKEKPSLENQGRQRDIHTSTSPQYE 749

Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
                                                S+ +    G+ +H  ++    L 
Sbjct: 750 -------------------------------------SNLKGIYYGIALHFAMEQ--KLK 770

Query: 798 EHKRKNFITSYC-TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKI 855
                  +      K       KE + ++     +L+N      ++      EV     +
Sbjct: 771 LQLNDALLLEILNNKVGFYLDFKELEKIVARCNLILKNQNFIEIITKGKVKCEVPF---L 827

Query: 856 NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
           +  ++  +     D +   + + +I +YK+       +E        Q+  Y + ++   
Sbjct: 828 SNGREKRL-----DLLIEGENSAWIVDYKSGKQDDSHVE--------QVRDYMESVQQML 874

Query: 916 PNKSLVCLLIYV---SEPKVFII 935
            +K     + Y     E K+  I
Sbjct: 875 -HKKTYGYVFYTQEAQEGKLIEI 896


>gi|167749801|ref|ZP_02421928.1| hypothetical protein EUBSIR_00769 [Eubacterium siraeum DSM 15702]
 gi|167657284|gb|EDS01414.1| hypothetical protein EUBSIR_00769 [Eubacterium siraeum DSM 15702]
          Length = 767

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 105/546 (19%), Positives = 177/546 (32%), Gaps = 116/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y  A     ++D++D ++   D+L+K      I    +    +I +DE QDTS I
Sbjct: 178 RIYREYNLALSSRSLMDYDDQMVTALDILRKYPD---ILAYFNGRFRYICVDEAQDTSKI 234

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E+IR L                +F VGDE QSIY+F GA P+ ++  ++  +      
Sbjct: 235 QHEIIRLLAA----------KSGNIFMVGDEDQSIYAFRGAYPEALIDFEKTYKN----- 279

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I+ +  +FRST +I+ V D         +  +  +         + G    +   
Sbjct: 280 ---AQILFMEQNFRSTPEIIGVADSFVKCNRFRREKTIRAVN-------KSGIPVRIVRC 329

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           E+   Q              +   +   +     A                         
Sbjct: 330 ERRNVQ------------YDFLCGIAARNEQQTAA------------------------- 352

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILS 430
                  L R      ++  +         I                + D+  + RFI +
Sbjct: 353 -------LFRNNDSAVVLVDMLE----RNNIPYRLKGGEKTFFTSRPVLDITEIIRFINN 401

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIF---KICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
             D  SF+ +        ++       KI  QRH T T                +  IK 
Sbjct: 402 PYDIDSFMAIYYKIGLYITKQTAEAACKISLQRHITITDALLGIDTGTQISVNSKRNIKQ 461

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +L+  AQ  S  +  ++IL   +    +  + G      LDE     LR    + +S 
Sbjct: 462 TAQLMRQAQNSSATEVLSIILHGMQY-ADYAHKNG------LDENKYDILRMLARNVNSS 514

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            ELI  L +    +       +++  + TVH++KGLE   V+L+D    V          
Sbjct: 515 AELIDRLSELSGIMAEHKDDPYSKFTLSTVHSSKGLEYDCVYLLDVIDNVLP-------- 566

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                      L         EE  R+ YV +TRA  +L +   
Sbjct: 567 ---------------------CITKDKLNDKEDIKQYEEERRVFYVAVTRARKELYLFSC 605

Query: 668 SNTSNE 673
              S+E
Sbjct: 606 KGESSE 611


>gi|255943109|ref|XP_002562323.1| Pc18g04920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587056|emb|CAP94716.1| Pc18g04920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 995

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 100/792 (12%), Positives = 209/792 (26%), Gaps = 178/792 (22%)

Query: 44  PTILKKAQTLQQASQTQCIEER----FSLLSSFFLTQKF---TPQKNIITQEINKKSPDL 96
               +  + L +    +         F  +   +L +       +K     + +     +
Sbjct: 63  KASREMRERLAKLIGEKLESRLILGTFHSICRRYLVKYGYLIGLRKGFGIADSDDTRAII 122

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY----------LNAHYEEAKKKNCV 146
           +  +K+ +        +    +     L+   LA            +   YE A   + +
Sbjct: 123 RRSIKRLKSSIEVKAAQGRISRHKAHGLSPDALADRAKAEELELVDIYRDYESALAASNL 182

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LD++DL++   DLL+               +  +L+DE QDT++IQ+E++          
Sbjct: 183 LDYDDLLLRCGDLLRDHPECV-------SNVQAVLVDEFQDTNIIQYELMNLFAA----- 230

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                  R +  VGD  QSIY F  AE + + R +R             +++ L  ++RS
Sbjct: 231 -----KNRRITIVGDPDQSIYGFRSAEIQNLKRMQRRYSN--------TTVVLLEDNYRS 277

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            A IL    +V     +    +  +T +                                
Sbjct: 278 AASILNAAQEVIEQDTSRPAKALQATHSFGTLPVLRRLPNP------------------- 318

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                           +  A+ +   I          +     +++  D  VL+R    +
Sbjct: 319 ----------------NAEAQWMVLEIKR-------CAAMTGGLLRMSDFAVLLRSASLS 355

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             I            I           D   +K L+   R +       + + ++  P  
Sbjct: 356 TQIETAF----GRAGIPYKMVGGRKFFDRTEVKILLNYMRVVSHTGHSDALMNIVNVPPR 411

Query: 447 NFSEDDIFKICTQRHE-TETVYEYIQKFANCGI---SKFQHVIKY--------------- 487
              ++ I ++ +   +    ++ +I+           K Q   +                
Sbjct: 412 RIGDETIKQLTSGAEKAKIPLWNFIKDVIQGRRSTEKKLQKAAEQGLCTLVNLVEASRQK 471

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT----------- 536
           + E    +      +F    L  ++   +      +     + E ++             
Sbjct: 472 LQECEDASAPRVLIEFIAERLSFQEYLIRTYPLDEDSRWANVRELMHQASEVAAFEEEEV 531

Query: 537 -------------LRNEQNSYSSLQELISELEQYPP----TIKRAHSANHNEVRIMTVHT 579
                         +   +   +L   ++ +            +       +V I T+H 
Sbjct: 532 DKEMDLPEIEGVQQQQAHSGEEALTRFLANVALATEITTKEESKEGDQPSEKVTISTIHA 591

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVF+    +    H                                       
Sbjct: 592 AKGLEWPVVFVPAVYNGSIPHS-------------------------------------- 613

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +    EE  RLLYV MTRA   L +                  D                
Sbjct: 614 RAEVVEEERRLLYVAMTRAQALLYLSIPIRQ-----PRLGEGEDGATTLTPFLPPKLTKT 668

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                         ++       P    + + + ++            + + +     + 
Sbjct: 669 RFRPTGPSLHEKVVYAIADILRRPRPSLDDMYKGLEFLPSTLDDRWTPEGEEDRSKFDST 728

Query: 760 STIDTKGKTNLE 771
           ST          
Sbjct: 729 STSHDASDEPNP 740


>gi|323489207|ref|ZP_08094439.1| UvrD/REP helicase [Planococcus donghaensis MPA1U2]
 gi|323397094|gb|EGA89908.1| UvrD/REP helicase [Planococcus donghaensis MPA1U2]
          Length = 708

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 100/657 (15%), Positives = 196/657 (29%), Gaps = 119/657 (18%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                 +    ++  L       TI   A  + +   +           +  L +K   +
Sbjct: 71  ASANDMLERYKRFFPLLQPIDFSTIHSLAFQITRDYFSGSRYIMIEGNEANGLHKKKLLR 130

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           +   T       P   ++L++       ++++    K +         A  +   YE  K
Sbjct: 131 EMYRT---ENDEPITDDQLEELISFISYVKNKMLPRKQWAKLKEPFPGAIEILKTYEAFK 187

Query: 142 KKN--CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           +     ++DF+D++    + L K      +  K     ++++ DE QDTS IQ  ++  L
Sbjct: 188 ENYDVRLVDFDDMLSLAYEALDKD---KGLLAKYQGRWDYVMTDESQDTSQIQHAIVEKL 244

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                         + L  V D+ QSIY++  AEP  +L+ + +             I++
Sbjct: 245 VA----------RHKNLCVVADDDQSIYTWRAAEPTYLLKFRTVYPDAY--------IMK 286

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           +  ++RS+ +I+   +      +     +  +         + G+   + L         
Sbjct: 287 MERNYRSSQNIVHTANAFIKTNKKRHDKNMFT---------KQGEGDPIVLKRL------ 331

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                               SS     + +   +  +               +  D+ +L
Sbjct: 332 --------------------SSEDAQFKYVLKELKEL--------------SEYGDVAIL 357

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFV 438
            R    +     L         I     D       H  ++D++   RF L  E    + 
Sbjct: 358 YRNNSSS----TLLMSELERLGIPFYMKDSDNRFFSHWIVEDMLNFMRFSLKPERIDIYS 413

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
            +       +S   +  +       E  ++ I         + + ++    +        
Sbjct: 414 KIASKTNAYWSSSQLKMLSRMNPTGEHAFDDINLTITLKEYQLK-ILAEQKKWFDALNGM 472

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSSLQELISEL-E 555
            P      I G     Q   SR     +    L + L  TL        S+      L +
Sbjct: 473 KPLKVIRTIRGEMGYDQMLASRAEKFGMKMTYLAQILT-TLEQIAEPLDSMTAFAKRLKQ 531

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
               T +       + + + T H++KGLE   V+++D    V   +              
Sbjct: 532 LEQVTQQAKKEKTDDMLTLSTFHSSKGLEFERVYMIDLVEGVIPTE-------------- 577

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                        EE  RL YVGMTRA   L +  H N S 
Sbjct: 578 --------------------EDAETPDLLEEARRLFYVGMTRAKTHLELISHGNESR 614


>gi|291277552|ref|YP_003517324.1| putative DNA helicase [Helicobacter mustelae 12198]
 gi|290964746|emb|CBG40601.1| putative DNA helicase [Helicobacter mustelae 12198]
          Length = 898

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 120/813 (14%), Positives = 247/813 (30%), Gaps = 201/813 (24%)

Query: 130 AKYLNAHYEEAKKKNCV----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            +     Y+ A  +  V    L FED+++  + +L +     +  +++D +I+HIL+DE 
Sbjct: 277 LERFKQKYQSACHQCNVKDGSLSFEDIMLFVHKILVENFARDFFYFRLDDKISHILLDEF 336

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q++++  L E+   G+      R+LF VGD+KQSIY F G++     +      
Sbjct: 337 QDTNEMQYKILLPLIEEIASGEG-RLGERSLFFVGDKKQSIYGFRGSDSSIFDKL----- 390

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                    +    LP ++RS  +++   ++VF                     S+  ++
Sbjct: 391 --------PYPTNSLPFNYRSQREVVEFNNEVFGKIF----------PDCAQIPSKKEKL 432

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
           G +++        D     +                      ++A  I  ++        
Sbjct: 433 GYIRVTPLPAELDDISGAIK---------------------EKVAQHIEQLLQAG----- 466

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    DI +L     D   +            +S V      LT+ +  + L    
Sbjct: 467 -----AHPNDIAILSYTNNDIDELKSFLSERF--AGMSFVTESNLSLTNRIEPRILKEAL 519

Query: 426 ---RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
                       L +  ++K  L     D    I +   +  +      +  +      Q
Sbjct: 520 LYREAAGGSGARLHYKNIIK--LLGLEFDAEISIPSLHQDLSSFIFACMQEFSLCDLHAQ 577

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             ++                                    +   + + EFLN   R    
Sbjct: 578 KFLEL-----------------------------------SFDYENVSEFLNEIER---- 598

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                               ++     + + ++T+H +KGLE   + + D   +  +   
Sbjct: 599 -----------------IDIQSVKEEVDGILLLTIHKSKGLEFKHIIVCDRFKKNRADTS 641

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
              +        D  I       +  +      +   +   ++E   + YV  TRA + L
Sbjct: 642 KFVIF-------DDEIFCRQKNRELFDARYQRALDGFENKKKQEEFNVQYVAFTRAKNSL 694

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            +  H++ S                          +       ++           P+ T
Sbjct: 695 FVIPHADGS--------------------------LASLGLEEQERGGILIDEDDRPQRT 728

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
            L ++  +++    Q                      S   TK    L    +       
Sbjct: 729 ALAKKPVMQRDFGRQ----------------------SAFITKEDAPLPVRKN----LLF 762

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
           G  +H  ++          ++     C        ++    +L  +  L EN      + 
Sbjct: 763 GQALHASIENYLGF-GINLEHLSMKLCNCYGFYLDSRALAKILSFLHVLCENAQFRALLE 821

Query: 843 CDS-YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
             S YSEV+         KD  +  RID +++  + I + ++K+              HI
Sbjct: 822 NSSCYSEVAF-------IKDHNLF-RIDMLAV-GEKIRVLDFKSG--------MHQEEHI 864

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
            Q+  Y       Y ++ +   L+Y+  P V  
Sbjct: 865 QQVQHYMD-FARGYFDRPIEGYLVYLHNPIVIE 896


>gi|302524414|ref|ZP_07276756.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
 gi|302433309|gb|EFL05125.1| ATP-dependent DNA helicase [Streptomyces sp. AA4]
          Length = 1057

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 121/1006 (12%), Positives = 273/1006 (27%), Gaps = 166/1006 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMET------GNPTILKKAQTL---QQASQ 58
           + +     + + L   P  +           + T          +  +A+ L   +  + 
Sbjct: 68  AADALRADLTRRLTSDPDQESPLPRTVSEPLVRTVHSYAFSLLRLEARAEELPPPRLLAG 127

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKS-PDLKEKLKKSQDEFIKIRDRFNTY 117
            +       LL         +  + +           +L++ L ++ +    +     T 
Sbjct: 128 AEQDVVVRELLEGDLEEGATSWPEQLRPALTVPGFAEELRDLLMRAAER--GLGPEDLTE 185

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL-----------IINTNDLLKKRDVS 166
              +        A    A YEE  +         L            + T+ LL   D  
Sbjct: 186 LGHRQDREEWVAAGQFWAQYEEVTQLQGAGG-NALGLPAAPALDAAELVTSALLALEDDE 244

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                +  +   H+ +D+      +Q ++IR++            +       GD  QS+
Sbjct: 245 ELRERERGRV-RHLFVDDAHHLDPLQVQLIRTI----------GHTAEEFVVAGDPDQSV 293

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           +SF GA+PK              +       + L  S R    +   V K+ +    A  
Sbjct: 294 FSFRGADPKLFAD----------SDNDGDRTVMLTTSHRLAPTVRAAVAKLGATLPGAS- 342

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                   +     + G    V+L     ++                             
Sbjct: 343 ----PHRKLVTPPGKRGGKVRVRLMPTPAAE----------------------------- 369

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              A  I++ +    +        +   ++ VLVR    T L+    +       + +  
Sbjct: 370 ---ASWIADQLRRAHLVD-----GVPWSEMAVLVRSPARTFLV---LQRALRAAGVPIGS 418

Query: 407 N-DRFILTDHLAIKDLMALGRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
             +   L  H A++ L+A+ R     E  D      +L S L       + ++       
Sbjct: 419 ATEELPLAKHSAVRPLLAVLRIAAEPELLDVDIAEMLLSSSLGGADPLALRRLRRGLRRL 478

Query: 464 ETVYEYIQKFANCGISKFQHV-------------IKYIHELIHIAQF-----CSPHDFFT 505
           E      +      +   +               ++ +  L+ I                
Sbjct: 479 ELAGGGQRSSDELLVEALRGGDILVGLADNEALPVRRVGNLLSITHQAVSRGEGVEQVLW 538

Query: 506 LILGAKKGRQQFIS------RFGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISELE 555
            +  A   +++ +         G +    LD      +   R  ++   +S+      L 
Sbjct: 539 ELWQASGLQERLLRLVDRGGSLGAQADRDLDAVVALFDSAGRYADRLPKASVAAFADYLS 598

Query: 556 QYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                       +     V ++T H + G E  VV +       +    ++   +     
Sbjct: 599 SQNIAGDTLAPAAIPGEGVSLLTAHASAGREWTVVAVAGVQEGAWPDLRLRGSLLGVERL 658

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            D             + +              E  RL Y+  +RA   L++   +    +
Sbjct: 659 VD-----------LLSGVDEHDKVSAIAPILAEERRLFYLAASRARRTLLVTAVAGEDEQ 707

Query: 674 KKSN-----QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                    +    D + DS         +         E +  + +         ++  
Sbjct: 708 PSRFLDDLEENGADDGMLDSRMKPPGRSLVLAELVGELREVVCDDKADPERRKRAAKQLA 767

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPY-------ILNPSTIDTKGKTNLESLLSDNQ--- 778
            +         P   +   +    +P         ++PST++   K  L  L+  +    
Sbjct: 768 RLAAAGVPGAHPDTWYGLPEASTEDPVHGPGDLMRISPSTVEILVKCPLRWLIERHGGSD 827

Query: 779 ----TFNRGLIIHKLLQVIFTLPEHKRKNFITS----YCTKNAKLWPAKEYKNLLLSITR 830
                   G ++H L Q I      ++               A  +  +E   +   +  
Sbjct: 828 PAQLAAVTGTLVHGLAQAIAGGSTEEQIQAALDEAWVRVDAGAPWFSRRERSRVEQMLRN 887

Query: 831 LLENPM--MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHH 887
            +          +      ++ V   +   +  +++ GR+D++ +       I + KT  
Sbjct: 888 FVSWLEKSRQELIEAGVEQDIEVELPMGDEEVRVLLRGRVDRVEMDKDGRPVIVDIKTGK 947

Query: 888 HVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCLLIYVSEP 930
                 +        QL+ Y+  +        N      L+YV++ 
Sbjct: 948 VPVSGADAEK---HPQLAAYQLAVLLGAVEGKNTPGGAKLVYVAKG 990


>gi|262369962|ref|ZP_06063289.1| ATP-dependent DNA helicase pcrA [Acinetobacter johnsonii SH046]
 gi|262315001|gb|EEY96041.1| ATP-dependent DNA helicase pcrA [Acinetobacter johnsonii SH046]
          Length = 662

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 101/602 (16%), Positives = 191/602 (31%), Gaps = 116/602 (19%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           +R   L  F L +    +KN       ++  DL    + ++ +     +     K     
Sbjct: 113 DRDDQLMMFRLIRGKDDKKNPNQLPKPQELCDLYSFARNTRQKLSDALE-----KQHPEH 167

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
           LA       +   YE  K+    LD++D++      L + D  A     +     H+L+D
Sbjct: 168 LAFKDQIAEIMKEYETRKRARSFLDYDDILAIVASALDQSDGLADYVASLC---KHMLVD 224

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E+QDT+ +QW ++  L +             +LF VGD+ QSIY F GA+ + +   K  
Sbjct: 225 EMQDTNPLQWALLEPLKD-----------KVSLFCVGDDAQSIYGFRGADFENIHHFKDR 273

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        + +L  ++RST +IL + + +    E       D+      +     
Sbjct: 274 VPN--------AQVFKLEQNYRSTQEILDLSNWLLDQSEIQYNKRLDAHRGEGVKPCMHI 325

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                                                     A+ IA  I          
Sbjct: 326 FPNEFD-----------------------------------EAKWIAIDIKERH------ 344

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                +  +  D +VLVR       I            +         L +   +KDL++
Sbjct: 345 ---YLQGSKWSDHMVLVRSSFAARHIE----AACIAANVPYRFIGGMKLLETAHVKDLLS 397

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           L R I +  DD++++  L         + +  +   R   + + E         + KF  
Sbjct: 398 LLRVIANPLDDIAWMRFLTL------WNGVGDVGASRLAQQLLLEPEFNLIFDKLEKFGR 451

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +      ++             + LG +    Q    +  +      +F     +     
Sbjct: 452 IPAETLLIMKQMTVLKQEVQACVSLGVQAIEAQLAENYKKDWNRRQGDF-ELVKQLASKH 510

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               + L   +       +    ++ + V ++T+H+AKG E  V ++V+     + H   
Sbjct: 511 NQLGEFLEEYVLDPVSISEIERQSDSDVVTLITIHSAKGTEQKVCYVVNVTPGQYPH--- 567

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                 +  EE  R+LYV +TRA ++LI
Sbjct: 568 -------------------------------ARAQGDFNDVEEERRVLYVALTRAQNELI 596

Query: 664 IC 665
           + 
Sbjct: 597 LT 598


>gi|291531503|emb|CBK97088.1| Superfamily I DNA and RNA helicases [Eubacterium siraeum 70/3]
          Length = 767

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 102/546 (18%), Positives = 173/546 (31%), Gaps = 116/546 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y  A     ++D++D ++   D+L+K      I    +    +I +DE QDTS I
Sbjct: 178 RIYREYNLALSSRSLMDYDDQMVTALDILRKYPD---ILAYFNGRFRYICVDEAQDTSKI 234

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E+IR L                +F VGDE QSIY+F GA P+ +   ++  +      
Sbjct: 235 QHEIIRLLA----------VKSGNIFMVGDEDQSIYAFRGAYPEALTDFEKTYKN----- 279

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I+ +  +FRST +I+ V D         +  +  +                    
Sbjct: 280 ---AQILFMEQNFRSTPEIIGVADSFVKCNRFRREKTIRAVNKSG--------------- 321

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                                I   I      +  +        
Sbjct: 322 -------------------------------------IPVRIVRCERRNVQYDFLCGIAA 344

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILS 430
           + +     + +  D+ ++      +     I                + D+  + RFI +
Sbjct: 345 RNEQQTAALFRNNDSAVV---LVDMLERNNIPYRLKGGEKTFFTSRPVLDITEIIRFINN 401

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIF---KICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
             D  SF+ +        ++       KI +QRH T T                +  IK 
Sbjct: 402 PYDIDSFMAIYYKIGLYITKQTAEAACKISSQRHITITDALLGIDTGTQISVNSKRNIKQ 461

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             +L+  AQ  S  +  ++IL   +    +  + G      LDE     LR    + +S 
Sbjct: 462 TAQLMQQAQNSSATEVLSIILHGMQY-ADYAHKNG------LDENKYDILRMLARNVNSS 514

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            ELI  L +    +        ++  + TVH++KGLE   V+L+D    V          
Sbjct: 515 AELIDRLSELSGIMAEHKDDPDSKFTLSTVHSSKGLEYDCVYLLDVIDNVLP-------- 566

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                      L         EE  RL YV +TR   +L +   
Sbjct: 567 ---------------------CITKDKLNDKEDIKQYEEERRLFYVAVTRGRKELYLFSC 605

Query: 668 SNTSNE 673
              S+E
Sbjct: 606 KGESSE 611


>gi|301062532|ref|ZP_07203175.1| conserved hypothetical protein TIGR00375 [delta proteobacterium
            NaphS2]
 gi|300443389|gb|EFK07511.1| conserved hypothetical protein TIGR00375 [delta proteobacterium
            NaphS2]
          Length = 1107

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 102/583 (17%), Positives = 166/583 (28%), Gaps = 158/583 (27%)

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +S  A   L      +Y+E      +LD +DL + T  L  +      +  K      HI
Sbjct: 640  ESDSALDDLFSAF-TNYQEKLINLGMLDLDDLEVETLRLFHQHPD---VCRKYALRFPHI 695

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT-------LFAVGDEKQSIYSFHGAE 233
             +DE QDT+ +Q E+++ +      G        T       + A+GD  Q+IY F GA+
Sbjct: 696  FVDEYQDTNQVQVELLKKMVYAGTNGSENTGKAPTECTPCAAICAIGDPNQAIYGFRGAD 755

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                          A         I L  ++RST +IL +   +       QG       
Sbjct: 756  ISNFNGFADDFPSSA--------TITLTKNYRSTQNILDLSAMLMKEKRPLQG------- 800

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                     G   +V L +      +                          A  I   I
Sbjct: 801  -------TSGSGASVYLAQCRTHLEE--------------------------AEMIIEQI 827

Query: 354  SNMI--------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              +I         ++ + S+     I   D+ VL R       +            I  V
Sbjct: 828  EKLIGGTTYFSLDSERVASHEDGENIGFGDMAVLFRLNA----MGDALEEAFLRAGIPFV 883

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             +    L D      +  L + +   + D    C L       + ++  +    R + E 
Sbjct: 884  RSGEKPLVDQYPANIIWRLLQSLNRPDSDYYRTCYLNL----LTPENHGEHVLGRIDRE- 938

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
                                  I ++I  A      D                     E+
Sbjct: 939  --------------------AAIGDVIDQAVLLHGFDL-----------------HSEEI 961

Query: 526  IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLE 584
              +LD         +         L S L+         H     + V +M++H AKGLE
Sbjct: 962  TRILDRVRKVAENYDH--------LPSFLDALALERGIDHQNLMGDRVSLMSLHAAKGLE 1013

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVVF++    Q+                                               
Sbjct: 1014 WPVVFIIGCEDQLLPCTLFGD------------------------------------RDD 1037

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
            EE  RL YVG+TRA  +LI+   +  S   +  +      +  
Sbjct: 1038 EEERRLFYVGLTRARLRLILSHAARRSLNGRPLEMKISPFLEP 1080


>gi|296138859|ref|YP_003646102.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
 gi|296026993|gb|ADG77763.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
          Length = 1094

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 130/1031 (12%), Positives = 266/1031 (25%), Gaps = 203/1031 (19%)

Query: 1    LKNRFGLS--LNESYELIYK------DLWPLPYFQVSDINKYVSLS----METGNPTILK 48
            L+         +     ++              F V  +    + +    + TG+     
Sbjct: 101  LRRELSARVLADRGRAGVHASGEPLVRTVHSLAFAVLRLQAAHAGAPPPRLITGSEQDAV 160

Query: 49   KAQTLQQASQTQCIEERFSLLSSFFLTQ--KFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
              + L+              L    +T       +            P+  ++L    D 
Sbjct: 161  VRELLRGHVDDGGAF-WPERLRPALVTGGFAGALRDLFAQAAQRGAGPEEIDELAARYDR 219

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC------------VLDFEDLII 154
                                   A      Y++                   +D  +LI 
Sbjct: 220  PE------------------WAAAAAALREYQQTTLLRGSVGLAGPTAVAPAVDAAELID 261

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
                 L   D    +  +  + I  +L+D+ Q+   +   +IR L           +   
Sbjct: 262  AAVTALAGDDA---LLAQQRERIRFLLVDDAQNLDPLASALIRLL----------GTGTE 308

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
                 GD  Q+I SF GA  + +                    I L  SFR   +I   V
Sbjct: 309  LTVIAGDPDQAINSFRGASTRFLQSL----------DVPAERDIVLERSFRFGEEITATV 358

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            ++V S   N  G            + R+      +                         
Sbjct: 359  NRVSSRLPNRFGSVAPERPRPGSAAVRLFSTAAKEADAIAA------------------- 399

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                                 M+  + +        +  +D+ ++VR    +       R
Sbjct: 400  ---------------------MLRREHVLG-----GVPWEDMAIVVRSVSASV---APLR 430

Query: 395  FLKNDYKISV-VGNDRFILTDHLAIKDLMALGRFILSQE--DDLSFVCMLKSPLFNFSED 451
                   + V V  D   L    A+  L++  R     E  D    V +L  P+      
Sbjct: 431  RALAYAGVPVTVAADDVPLARQRAVHALLSTVRAACEPESLDPAEAVALLSGPVGGGDPL 490

Query: 452  DIFKICTQRHETETVYEYIQK-------FANCGISKFQHVIKYIHE------------LI 492
             + ++       +   E             +   + ++  +  +                
Sbjct: 491  TLRRVRRAVRRADPSDERGSAEILGAVVAGSVDFAPYRAALTELEAEPVERVLAAVHAAR 550

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFIS------RFGNEVIDVLDE---FLNFTLRN-EQN 542
              A   +  +             ++ +        G +    LD      +      +  
Sbjct: 551  AAAVEGTVEEVLWAAWSVTGLSGRWGALALRGGSVGEQADRDLDAVMGLFDAAADFTDTL 610

Query: 543  SYSSLQELISELEQ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              +S    I  +EQ          R  +     V +++ H A G E  VV +       +
Sbjct: 611  PTASPARFIEYIEQLHIPRASGGGRRETPTTPGVTVVSAHGAAGREWDVVAVAGVQEGRW 670

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +   +   +      D    I      + +  +  L +  +            V  +RA
Sbjct: 671  PNLRRRGGLLGTEELLDALDGIDPAALPTVSRSLPLLAEERRLLL---------VACSRA 721

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
               L+I        +       +   +  S   D       + +       +    +T  
Sbjct: 722  RRTLLITAVDTADGDGDLVPSRFLQGIAPSGEEDPETYTPAVESEPAASLDLRTLVATLR 781

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFS-------------------PIKNDINEPYILNP 759
                   REE+ +     Q                           P+    + P  L+P
Sbjct: 782  AAACDPRREESERAHAARQLARLAADRVPGAHPDSWYGLAGASTDDPLWQPDDGPVALSP 841

Query: 760  STIDTKGKTNLESLLSDNQT-------FNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTK 811
            S ++      L  +L               G ++H L+Q +   +P+ +    +     +
Sbjct: 842  SNVEALSACALRWMLERFGGSDGDSAKQATGNLVHTLVQAVAGRIPKDEVTRSLEKVWDR 901

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD------IIIS 865
                      + L+ +   +LE+     A S    +E  V   I+   +       + I 
Sbjct: 902  VDLEADWFARRELIRT-EEMLESFRAWLAGSRSELTEAGVEVPIDTVIEGTDGAPDVQIR 960

Query: 866  GRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK----DSYPNKSL 920
            GR+D++         + + KT   +P + +       AQL  Y+  +        P    
Sbjct: 961  GRVDRLERDPLGRTVVVDVKTGRTLPSQADGQA---HAQLRTYQVAIAHGGLGGVPETPG 1017

Query: 921  VCLLIYVSEPK 931
               L+YV++P 
Sbjct: 1018 GGKLLYVAKPH 1028


>gi|302536761|ref|ZP_07289103.1| UvrD/REP helicase [Streptomyces sp. C]
 gi|302445656|gb|EFL17472.1| UvrD/REP helicase [Streptomyces sp. C]
          Length = 832

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 109/778 (14%), Positives = 215/778 (27%), Gaps = 118/778 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLS 70
                +     L       I    S  +          A+ L++A        +    L 
Sbjct: 119 RISTYHAFAGQLLKDHGLRIGLEPSARLLADATRFQLAAKVLREAPGPYPSLTKSVPDLV 178

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S  L       ++++  +  +      E L    D  +   D     +  +  L  L L 
Sbjct: 179 SDLLALDGELSEHLVEPDALRAYDT--ELLGVLADTKLTNDDLRKVPEAVRGRLELLELV 236

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                 Y  AK+   + DF D I  +  L         +   + +E   +L+DE QDTS+
Sbjct: 237 S----RYRAAKRSRDLFDFGDQIALSARLATT---RPEVGALLREEFRVVLLDEYQDTSV 289

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q             G     +   + AVGD  Q+IY + GA    +             
Sbjct: 290 AQ--------RLLLSGLFGGGTGHAVTAVGDPCQAIYGWRGASVANLDDFPEHFP---HP 338

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            G   + + L  + RS   +L + + + +                     R    G   L
Sbjct: 339 DGSPATRLSLSENRRSGGRLLDLANGLAA-------------------PLRAMHEGVEAL 379

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                            +           ++ +     +  ++++++ T           
Sbjct: 380 RP------------APGAERDGLVRCALLNTHAEELEWLGDSVAHLVRTGR--------- 418

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +  DI VL R   D   I  +         + V       L     + DL+++   +  
Sbjct: 419 -EPGDIAVLCRSAADFAQIQAVLVA----RDVPVEVVGLSGLLHLPEVADLVSVCEVLQD 473

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY--------------------- 469
              + + V +L  P +     D+  +     +     +                      
Sbjct: 474 PGANAALVRLLIGPRWRIGARDLALLGRLARQLVARPDAADGPDGRLAAALEGVDPAEVV 533

Query: 470 ----------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
                              F+     +F H+ + + +L   +      D    +L     
Sbjct: 534 SLADALETFLDGSAPGDLPFSAAARVRFAHLAQELRDLR-RSLSDPLMDVLHRVLATTGL 592

Query: 514 RQQFISR---FGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI---KRAHS 566
             +  +          + L  FL+        +  ++L   +  L            A  
Sbjct: 593 DVELSASPHALAARRRETLSNFLDVAAGFAALDGEATLLAFLGFLRTAAQYEKGLDHALP 652

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIW 621
              N V+++T H +KGLE  VV + D  +  F  +   +       ++P         + 
Sbjct: 653 GGENTVKVLTAHKSKGLEWDVVVVPDLCAGSFPKEKAPEAWTAHPKVLPYALRGDADTLP 712

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK-HSNTSNEKKSNQRT 680
              + + +  +      LK   + E  RL YV  TR    L+        + +++     
Sbjct: 713 AAPAWT-SAGLKSFKAALKTHKETEELRLGYVTFTRPRSLLLASGHWWGPTQKRRRGPSA 771

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
           +   +Y          +          E  A         + PL  +     L  E  
Sbjct: 772 FLQALYAHCEAGFGEIEAWAQEPAPDAENPALAADAAQDHSWPLPLDPASLALRREAA 829


>gi|330984007|gb|EGH82110.1| ATP-dependent DNA helicase pcrA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 700

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 88/560 (15%), Positives = 176/560 (31%), Gaps = 120/560 (21%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 +  + + Y +  +    +DF+D+++    LL +      I  ++ +   ++++D
Sbjct: 199 EMLYRTSMDVWSTYTKLCRAANGIDFDDILVVACQLLARD---QQIGRELSERYRYLMLD 255

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ +Q  ++  + +              +F VGDEKQSIY+F GA+   +L  K  
Sbjct: 256 EYQDTNRVQMRIMDEIAKH----------HENIFVVGDEKQSIYAFRGADITVILGFKSR 305

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                    +   I+ + +++RST  IL   + +              +  +     R  
Sbjct: 306 Y--------KGAKIVSMDINYRSTPAILDAANCIAMHM----------SQKLTEGQLRKD 347

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                +     +   ++                         A  IA  I   I      
Sbjct: 348 DPYMERGKAIALVGFENDLQE---------------------AEVIAKAIRRDISQGAQG 386

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                     KDI +L R R   P+I            I+              +K+ +A
Sbjct: 387 ----------KDIAILYRSRTTKPVIEQAL----VKAGINYQVVGDIGFYQRAEVKNAIA 432

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC------TQRHETETVYEYIQKFANCG 477
           L RF     D ++ + +LK   F  S+    K               +     +      
Sbjct: 433 LLRFTFRPWDSMAALRVLKCTSFGVSDKSAKKAMSTGKTAHAYLTEMSEKTRGKDEPTAV 492

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--GRQQFISRFGNEVIDVLDEFLN- 534
             K + ++  +  +  +  +     +    +        Q  + R        +DE +  
Sbjct: 493 AQKLKPLLSMMLCIRRLVAYGEEAGYVRQAVERMWESYLQPGVQRAAASDNAPIDEAVES 552

Query: 535 -------FTLRN--EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
                     R   E  +    ++++ EL       K+        +++MT+H +KG+E 
Sbjct: 553 RMQNVAFLLDRFFGELENGRKPEDILDELSMMGDVTKQTEQDKALTIKLMTIHGSKGMEF 612

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           P V+L    +                                         +    +  E
Sbjct: 613 PYVYLPGLDADTTPG------------------------------------EAEDINELE 636

Query: 646 EYNRLLYVGMTRASDQLIIC 665
           E  R+ YVG+TRA  ++ + 
Sbjct: 637 EERRIFYVGLTRAMKRVNVS 656


>gi|209547839|ref|YP_002279756.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209533595|gb|ACI53530.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 686

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 105/673 (15%), Positives = 196/673 (29%), Gaps = 143/673 (21%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQCIEERFSLLS 70
            E I +D+       ++D   +       G   +   AQ   L         E+   L++
Sbjct: 77  VERICRDVLGANAGVMADALNWSGTFHGIGARLLRDYAQQIGLDADFTIHDREDSADLIN 136

Query: 71  SFFLTQKFTPQKNIITQE---------INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                  F+  ++    +                L + L+ +         +        
Sbjct: 137 LIRHDLGFSKTESRFPAKGTCLAIYSRAVNSETALDQVLRDAFPWCAAWEKQLR------ 190

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                      L A Y EAK+   VLD++DL++    ++ +  ++  I        +H+L
Sbjct: 191 ----------ELFACYVEAKQSQNVLDYDDLLLYWAQMVGESVIAEDI----GSRFDHVL 236

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ +Q  ++ +L              + L  VGD+ QSIYSF  A  + +L   
Sbjct: 237 VDEYQDTNRLQASILMAL----------KPQGQGLTVVGDDAQSIYSFRAATVRNILDFP 286

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         +I+ L  ++RST  IL   + V  +       +             
Sbjct: 287 AAFS-------PAANIVTLDRNYRSTQPILAAANAVIDLASERFTKN------------- 326

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   LW +  S    +    ++               +  AR +A  + +      
Sbjct: 327 --------LWTERQSAERPRLVTVRD--------------EADQARYVADMVLDNREEG- 363

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    +  K   VL R    +  +            I  V        D   +KD+
Sbjct: 364 ---------LTLKQQAVLFRASHHSGPLEVEL----TRRNIPFVKFGGLKFLDSAHVKDM 410

Query: 422 MALGRFILSQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           +A  RF  +  D ++   +++  P    S             +                 
Sbjct: 411 LAALRFAQNPRDRVAGFRLMQILPGVGPSTAQKALDLMAEDASPITALAAMPAPPRSGED 470

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
           +   +  + E+                  A    +  +          L +         
Sbjct: 471 WTDFVSMLQEMKSGKAGWPAEIELARQWYAPHLER--LHEDAATRQADLLQLEQIA---- 524

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              Y+S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++    
Sbjct: 525 -GGYASRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWTRVFMLNVVDG 583

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                                                  +     +  EE  RLLYV MT
Sbjct: 584 CIPSD----------------------------------LAVGASAEIEEERRLLYVAMT 609

Query: 657 RASDQLIICKHSN 669
           RA D L +     
Sbjct: 610 RARDGLDLVVPQR 622


>gi|50311391|ref|XP_455720.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644856|emb|CAG98428.1| KLLA0F14256p [Kluyveromyces lactis]
          Length = 966

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 92/648 (14%), Positives = 188/648 (29%), Gaps = 141/648 (21%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            + +   ++ +  T + +    +  +  +Y+   +++      +LDF+D+++ +  LL +
Sbjct: 156 LRTKISDLKAKGVTPQAYLKDQSHDSAIQYIYERFQDTLLSEALLDFDDILLYSKILLMQ 215

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
           R + +++         H+L+DE QDT+ +Q ++I  L          H     +  VGD 
Sbjct: 216 RRIWSFV--------RHVLVDEYQDTNELQLDLIYLLAR------GKHDKCSGITVVGDP 261

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY+F  A             K       + + I L  ++RS   +L   +KV     
Sbjct: 262 DQSIYAFRFASSDN-------FNKLIERCPVQSAQISLIDNYRSAQTLLDFSEKVIGQQI 314

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +   +       H                              S+    D+     S 
Sbjct: 315 KNRIKRDPLRAQFNHN------------------------VKPFYSYFQRTDTFENSESN 350

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
           S             +  + ++      + +  D+ +L+R R+    I           +I
Sbjct: 351 S-------------LAHEILYLKSLPGLFKFSDVAILLRTRRQVYDIEKAL----IKNRI 393

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                +   + +       +   R I      L+ +  L+          I KI +   +
Sbjct: 394 PYRIVNAKGVWEKKESGIFLDYLRIISQDSCSLAILRCLQFASNGIGSTTIRKIKSAFDK 453

Query: 463 TET---------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
                       + E          +  +  I  + +L    +    +D    +      
Sbjct: 454 DRCRNSLEVLKELCESNDLNNQKISAALKRFINLVEKLKLKCEEYDTYDGLKELFAEIYM 513

Query: 514 RQQFISRFGNEVI--------DVLDEFL-----------NFTLRNE-------------Q 541
             +  S                 L EFL                 E              
Sbjct: 514 LGELYSVLKISKETINEQIKDRSLKEFLQTEHQNMFKVYELFTEYELDQNDEHIMIQENA 573

Query: 542 NSYSSLQELISELEQYP-------------------PTIKRAHSAN------HNEVRIMT 576
              + L  +                                 +S +         V + T
Sbjct: 574 ADPNDLALIKENFNSNDLNFFEVITFFTKSISLYSSEEENTENSLDKLANHLQERVTVST 633

Query: 577 VHTAKGLESPVVFLVDTGSQVFS---HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +H AKGLE PVVF+      +         +++  +  L  D      +      +    
Sbjct: 634 IHAAKGLEWPVVFIPSINEGLIPFTEQSARQRLEDLAELRRDGEACNDLNNCSMGSGEFD 693

Query: 634 DLIKHLK----------KSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           ++ + L+          ++T  E  R+ +V +TRA D L +      S
Sbjct: 694 NIKEELRGKESDLIDDLETTLNEERRIFFVALTRAKDLLYLSSSGKKS 741


>gi|116073017|ref|ZP_01470279.1| hypothetical protein RS9916_31242 [Synechococcus sp. RS9916]
 gi|116068322|gb|EAU74074.1| hypothetical protein RS9916_31242 [Synechococcus sp. RS9916]
          Length = 1222

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 121/1001 (12%), Positives = 249/1001 (24%), Gaps = 183/1001 (18%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            S + +  DL        S    Y    ++     + K    +          +  ++L+ 
Sbjct: 240  SADALEHDLAAAAAELKSLALPYSPYRLKPKPDRLQKVQSWIDSLEGRTPGYD--AVLAQ 297

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
              L + F P     T+       D     +        +           +    L    
Sbjct: 298  AELQKYFHP--GPFTKVAAAAHGDRVSLPQAE------LLRAIADLVDGPAEAMLLHFGH 349

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +        ++++  + F  L+   +        ++ +   I Q     LIDE QDT  I
Sbjct: 350  WGRQELTRRRERSGQMSFGQLLEQLDPGAGDDGATSPLLQAIGQRYRAALIDEFQDTDPI 409

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            QW ++                   L  VGD KQ+IY F G E                 A
Sbjct: 410  QWRILER-------AFTGDPPQHLLVMVGDPKQAIYRFRGGELATYRL----------AA 452

Query: 252  GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
             +      L  + RS+  ++  ++ +         L       +  +       G   L 
Sbjct: 453  SKTEQCYGLYENRRSSEPLVRALNALMQPGLQRSELPVPPVEPMADKGELAMPDGQSPLQ 512

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRV 370
               +  H                             ++A     ++     + S    RV
Sbjct: 513  LLNLDPHHLDS-------------------------QVATFCQQLLQEQWPLRSERGSRV 547

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            ++  D+ +LV +           R     + +      +  + + L    L      +  
Sbjct: 548  LEPGDLCLLVSQHSQA----EALRSALERHHLPSRLVSKGDVFESLGAAALQRFLDALAL 603

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
               +     +  SPL  +S  DI                     N     +  +   +  
Sbjct: 604  PGHNGRQRLLAGSPLLGWSAADIQ--------------------NAQPQDWDQLAAALSN 643

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
            L                L   +G  +         +  L +                 + 
Sbjct: 644  LAERLPHQGLTAVLAQ-LQGSEGLARL--SLRGRTLADLQQAAELVQEQMHKLGLGTLQA 700

Query: 551  ISELEQYPPTIK--------RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ---VFS 599
               L +                  A  + + ++TVH +KGLE PVV           + +
Sbjct: 701  ADWLRRQRLQDHGESPEAHLCRSDAAESAIAVVTVHRSKGLEYPVVICPFLWKGSKAIKA 760

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                     M S   DP + + +     +  + +   +  + +  E   RL YV  TRA 
Sbjct: 761  GARQLGRRWMRSPEADPHLDLHLNPHWGQGRLAAQQDQRAQAAEAE---RLAYVACTRAR 817

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
              L++        E  +    W  +V      D  + + +   S     W          
Sbjct: 818  HLLVLGWPGVDLAEPANPLSPW--LVEGGLERDLPLHRCETRASNTIKPWQPEPPQGSLA 875

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI---------------------LN 758
                  R    +               +  ++ E                        + 
Sbjct: 876  LGPTPSRPLDSRWGRASYSAWAHSQVAVPPEMREDGRDTDAINLEPALEHTASIPNDGIT 935

Query: 759  PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC---TKNAKL 815
            P +        L  L    +    G  +H++L+ I         +               
Sbjct: 936  PLSEKQTSWPELGPLAEFPRGAGPGDALHRILERIDYGTLAAGDDAQARVVVAEELPRAG 995

Query: 816  WPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEVSVSGKINCPKKDIIIS-- 865
               +    L+  +++L+  P         +      D  +E++    +   + D ++   
Sbjct: 996  LSLEWADTLMSGLSQLMHTPMGGALGACRLGDLRKGDWLNEMNFDLPLAHTQPDHLVRSS 1055

Query: 866  ----------------------------------GRIDQISISQQNIFIFEYKTHH---- 887
                                              G ID +   +   ++ ++K++     
Sbjct: 1056 GLAKVFNAHPGGLFNEGYGQQLNLLDVASRGFLTGSIDLVFCWEGTWWVADWKSNWLGQR 1115

Query: 888  ----------HVPQEIEHIPY-----THIAQLSIYEKILKD 913
                            E +        +  Q  +Y   L  
Sbjct: 1116 DGQGTVQQCGPANYTQEAMAELMVSNHYPLQAHLYLVALHR 1156


>gi|120536959|ref|YP_957017.1| UvrD/REP helicase [Marinobacter aquaeolei VT8]
 gi|120326793|gb|ABM21102.1| UvrD/REP helicase [Marinobacter aquaeolei VT8]
          Length = 715

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 102/649 (15%), Positives = 197/649 (30%), Gaps = 123/649 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
             L++ + +    + Q            F+     P  +    E  +    LKE      
Sbjct: 91  RFLRQYKDMFGLKEDQDWVILTENEQRRFMNDIGKPLADKANVEAKELRKKLKEDFSLWS 150

Query: 105 -------------DEFIKIRDRFNTYKMF----KSTLASLTLAKYLNAHYEEAKKKNCVL 147
                        D  + +              +       LA      YE+ K+    L
Sbjct: 151 LMKQSGVCPGNVSDALMALEKARCAKSGATPNHERVSMLDRLAAQTLVQYEKDKRSGGYL 210

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+DL++     LKK      +   +  +  ++++DE QDT+ +Q+ + +++ E      
Sbjct: 211 DFDDLLLLPTRALKKYPE---VAKGLAMQHRYMMVDESQDTNAVQYWMTKAIAEH----- 262

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   L  VGD+ Q IY++ GA    + R              K  + +L  +FRS 
Sbjct: 263 -----HGNLVMVGDDDQGIYTWRGARVANLRRFIEDF---------KAPVAKLEENFRSH 308

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           + I+T    +     +           +  +       GT+                   
Sbjct: 309 SKIVTTAGNLIKHNRSR----------LAKKPFSAKDQGTLP------------------ 340

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   +        +A+ I   IS +               +  DI +L R  + T 
Sbjct: 341 -------EVRVSERDRDMAQSIVDQISELRAQG----------AEYNDIAILYRTNRMTT 383

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           ++    +       I           +   I+   A  R I ++ DD   +  L+  +  
Sbjct: 384 ILEPALK----QAHIPYSVVGGMSFYERQEIQAATACIR-IANKWDDWMALRSLQPYIDG 438

Query: 448 FS----EDDIFKICTQRHETETV--YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
                  D I  +        T+  +E  Q+F   GI     +++        A   +  
Sbjct: 439 IGKKGINDTIKSLQEYNENLLTLAIHEAPQQFGKAGIRLQAFLVEVFANTHGNADNMTQP 498

Query: 502 DFFTLILGAK-KGRQQFISRFGNE-----VIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
           +    ++     G  + + R  ++       D LD  ++          +     +  L 
Sbjct: 499 ELARRLVQWMKDGPMKILDREKDDVVRVKRSDNLDLLVDEI------DRAKPDCFMEYLM 552

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
           + P +     S + + V + T+H +KGLE P V +      +      K           
Sbjct: 553 EGPISDFVEASDDEDRVTLSTIHRSKGLEWPHVIIAGMSDGLMPLDSAK----------- 601

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                   +  + +               EE  RL YV  TRA++ L +
Sbjct: 602 -----MNGRPSATSPSKDQADPDDDGGKPEEERRLAYVAATRAAETLTM 645


>gi|317063871|ref|ZP_07928356.1| ATP-dependent nuclease subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|313689547|gb|EFS26382.1| ATP-dependent nuclease subunit A [Fusobacterium ulcerans ATCC 49185]
          Length = 1030

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 137/864 (15%), Positives = 278/864 (32%), Gaps = 156/864 (18%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTY----KMFKSTLASLTLAKYLNAHYEEAKKK 143
            ++  K  D+  +L+  +  + ++RD          +       L +   +   Y++ K +
Sbjct: 275  KVKSKKGDIDSELEDMKYIYGELRDNLAKTMYNNSVIPYEEKLLYILNRIYEVYDDIKFR 334

Query: 144  NCVLDFEDLIINTNDLLKK--------RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
                   D+   T   ++           V+      +D +I+ I IDE QDTS++QW++
Sbjct: 335  EKRFTHSDISSYTFKYIRDKELNFINENGVTDEFFEILDGKIDTIFIDEFQDTSILQWKI 394

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            ++ + +              +  VGDEKQSIY + G E K     ++I            
Sbjct: 395  LKDIIDQ----------TNNVICVGDEKQSIYGWRGGEKKLFENLEKII---------DG 435

Query: 256  SIIELPLSFRSTADILTVVDKVFSIP---ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +L   FRS  +I++  + +FS      + +   E+        S      G +++  
Sbjct: 436  KEEKLFTCFRSEKNIVSFTNMIFSNISKMSDREEFGEEPWNFYEVNSKSEDVSGHIEVLR 495

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            +                        +    + +  +I   I +                 
Sbjct: 496  K------------------------KSEEEATVIDQIIKRIKDNFNG------------N 519

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             + I +L R  K+  +I            I  V +    + D+  I  L +L  +++ + 
Sbjct: 520  YRGIGILGRTNKELDMIAEKLSE----ADIPYVIDSNSNIVDYRGINGLFSLINYLV-KN 574

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
            D L+ +   +S L N     +  +   R + E      +            V++ +  + 
Sbjct: 575  DYLALLDFFRSDLINIRVKALKYLIKNREDVEKYLNMEEAEILLDGVDL-EVLEIVRYIK 633

Query: 493  HIAQFCSPHD--FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                  +         IL       ++        I  +  F               +E 
Sbjct: 634  KEYLENNGETNFLTYDILKKAGIGGRY---NSKSDISNIYSFYKIIKSY-----KYFEEF 685

Query: 551  ISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF-LVDTGSQVFSHKHIKKMH 607
            I E E  +     K+    + N V IMT+H +KGLE   +F   +  S+  S  +++   
Sbjct: 686  IVEFEDKRNSDKFKKMVLEDDNSVNIMTIHKSKGLEFDTLFYYYNPSSRGSSRGNMRFFL 745

Query: 608  IMPSLNDDPGIPIWIPQSKSR----NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
             M    ++P   +       +         D +  ++   + E    LYV +TR  + L 
Sbjct: 746  KMDKEYNEPESFLITHDKFKKVIKSLGREYDYLADIEIKEKHEEINNLYVALTRPKNNLY 805

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            I          K N  +    + +    D  +   K    I+K++   +      PE   
Sbjct: 806  IA-----VENDKENLFSEALFISEDKIEDGDIVPNKSEKKISKEKKREFVLDLSTPEAEY 860

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
             + EE++++  ++                                     L +     RG
Sbjct: 861  NKAEESMEKEREKIYSHA--------------------------------LGNEIKRVRG 888

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAM 841
              +H  L+ I    + +         +K A +   K  K LL   +I  +L         
Sbjct: 889  TTVHFFLENIIHGTDEEVAFSKELTFSKFASVIGEKAIKELLSDENIEYILN--KNREIF 946

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQIS------ISQQNIFIFEYKTHHHVPQEIEH 895
            S           ++    K      RID++        ++  ++I +YKT     +  E 
Sbjct: 947  SDKWDFIFP-EYEVFTEDKTF----RIDRLMIKMPNEETKGTVYIVDYKTG----ETDEE 997

Query: 896  IPYTHIAQLSIYEKILKDSYPNKS 919
                   Q+  Y+ +++    +K 
Sbjct: 998  -------QIENYKVLVEKLLEDKK 1014


>gi|149921796|ref|ZP_01910242.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149817357|gb|EDM76831.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 683

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 93/629 (14%), Positives = 188/629 (29%), Gaps = 134/629 (21%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           S L    LT K  P   ++T+        +  +          + +R  T       L  
Sbjct: 138 SELGMAVLTSKRFPDARVLTK--------IASQAAGMLGTIPAVIERRFT-----RFLDL 184

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           +     + A ++E K++  ++DF+DL+    +LL+    ++ +  ++  + +H+L+DE Q
Sbjct: 185 VAPIDKVLADFKERKRRLNMVDFDDLLSYWLELLRDPKHAS-VAEQLRGQWDHMLVDEYQ 243

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D +++Q  +I  +  D            +L  VGD+ QSIYSF GA+  ++   +     
Sbjct: 244 DINVLQGAIIDEMARD----------HGSLTCVGDDAQSIYSFRGADFSQIYDFRIR--- 290

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                 ++  ++ L +++RST  IL++ ++  +           +        +      
Sbjct: 291 -----HKEAQVLPLTINYRSTPQILSLANRSIARNREQHPKELTAVRKPGATPA------ 339

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              L                                      +A  +  +    ++    
Sbjct: 340 ---LIPLRDVIQQG--------------------------ELVAQRVLELHHEQSLPLRK 370

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    + VL R    +       +       I           +   IKD++A  R
Sbjct: 371 ---------MAVLYRNHAHS----LELQVELTRRNIPFAVRSGVRFFEQRHIKDVVAYLR 417

Query: 427 FILSQEDDLSFV------------------CMLKSPLFNFSEDDIFKICTQRHETETVYE 468
              +  D L+++                   +L      F               E +  
Sbjct: 418 ARENPRDALAWLRLLRLWPGIGNRTAERVASVLAGEFDAFGRRLPVPAGPPAPVPEVLAA 477

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
             ++           + K    L+             ++        +      +   + 
Sbjct: 478 ESKQAKGRAKDALVTLAKLFDRLLEAGGRNPGRAIEIIVHEHYADYAERSFENADARKED 537

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           LD   N+  R E  +       ++ +E              +++ + T+H AKGLE PVV
Sbjct: 538 LDNLANYAGRWEDATE--FLSELALIEGISAENVVMGDEPDDKLVLSTIHQAKGLEWPVV 595

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F++      F                                           +  EE  
Sbjct: 596 FVLWLVDGRFPSSQAL----------------------------------RANAELEEER 621

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSN 677
           RL YV  TRA D L +   +     +   
Sbjct: 622 RLFYVATTRAEDDLYLLYPTIEEGRRGPT 650


>gi|206896426|ref|YP_002246429.1| ATP-dependent DNA helicase PcrA [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206739043|gb|ACI18121.1| ATP-dependent DNA helicase PcrA [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 696

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 107/674 (15%), Positives = 202/674 (29%), Gaps = 134/674 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E + + +        + ++ + +  +    P        + Q       ++   
Sbjct: 100 AADELKERLGRLIPEGDRIFAATMHSFAARMLRYFAP-----YAGISQNFVIYDDDDSKG 154

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI-RDRFNTYKMFKSTLAS 126
           L+           Q N+ T+       D+   +  ++              + + S    
Sbjct: 155 LIEDIL------KQMNMDTKRFRPN--DVLNHISAAKARMFDCNTFPEFIRQRYGSWGYY 206

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   YE  K+++  LDF+DLI+    L ++ +    +R  I    + +++DE Q
Sbjct: 207 FDTVHQVFMTYERLKEQSQALDFDDLIMV---LAQRMEDRPELREMIAGLFDLVMVDEFQ 263

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q++++  +T   + G         +  VGD  QSIY F  AE   + R       
Sbjct: 264 DTNFAQYQMLLYMTNPHYSGM------NNVTIVGDPDQSIYGFRAAEYYNIKRFIDDY-- 315

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     ++ L L++RS   I+     + +   +A                      
Sbjct: 316 -------NPEVVFLDLNYRSNRTIVDSASALINDSPSAL--------------------- 347

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                         +    +      FD      +A+         +  +          
Sbjct: 348 ------FERKLESIKGAGNKLILRRPFDDADAAITAAF-------EVQRLHKMG------ 388

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               I  ++I VL+R R  T  +            I               IKD++A  R
Sbjct: 389 ----IPYEEIAVLMRTRALTARVEREFAT----RNIQYHIIGGVPFFARREIKDILAYLR 440

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-TVYEYIQKFANCGISKFQHVI 485
              +  D +S   +L      F    + K+     E + T+ E ++      + K   + 
Sbjct: 441 LSRNAMDRVSLKRILTMKKRGFGTASLEKLFNFAEENKLTLLEAMKAAVESLLFKKLSMN 500

Query: 486 KYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEFLNFT 536
            Y+  L  + Q       P     L++  +     F           E  + + + ++  
Sbjct: 501 DYLESLYTLIQTIQEIAEPSQAIYLVMEQENLLDHFRSISKSEEEYIERTENVKQLISIA 560

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                         + +  Q      R ++     V I TVH  KGLE   V L      
Sbjct: 561 EE---------SADMDDFLQRSALGTRENNGGVEGVAISTVHGVKGLEFQAVILYYVTDG 611

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F H                                      +  + +EE  RLLYV MT
Sbjct: 612 FFPHS-----------------------------------LSVTTAEKEEERRLLYVAMT 636

Query: 657 RASDQLIICKHSNT 670
           RA + LI       
Sbjct: 637 RAKEHLIFYVPYKQ 650


>gi|260188245|ref|ZP_05765719.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289448885|ref|ZP_06438629.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289421843|gb|EFD19044.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A]
          Length = 1055

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 119/996 (11%), Positives = 261/996 (26%), Gaps = 180/996 (18%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS--------FFL 74
               +   +    S +         +    L +   +   +     L +           
Sbjct: 83  RAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGPAATT 142

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T     +  + T        +L+  L +  +  +   +     +           A    
Sbjct: 143 TWPAHLRPALTTAGFAT---ELRNLLARCAERGLDPLELQQLGRRPGRPE--WIAAGQFA 197

Query: 135 AHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             YE+                   L   +L+    +      V   +       +  +L+
Sbjct: 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFA---VDPELLAAERARVRTLLV 254

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           D+ Q        ++R L     +              GD  Q+++ F G EP  +L    
Sbjct: 255 DDAQQLDPQAARLVRMLAAGTELA----------LIAGDPNQAVFGFRGGEPTGLLA--- 301

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                    G     + L +S R    +   V  +               T     S  +
Sbjct: 302 --DDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTV 359

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              G+                                      A   A  I++ +    +
Sbjct: 360 RLAGS--------------------------------------AHAEAAMIADALRRAHL 381

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   +    + V+VR       +               VG     L+   A++ L+
Sbjct: 382 ID-----GVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGG---PLSAEPAVRALL 433

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT----------QRHETETVYEYIQK 472
            +        D    + +L  P+       + ++             R   + + E +  
Sbjct: 434 TVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGG 493

Query: 473 FANCGIS---KFQHVIKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGN- 523
            A          + V   +       +  S     P             ++++++   + 
Sbjct: 494 DAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHG 553

Query: 524 -----EVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVR 573
                +    L+      + T     + S +SL+ L+  +       ++   +A   +V 
Sbjct: 554 GAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVM 613

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +++ H A G E  +V +      ++ +   +   +      D    +    S        
Sbjct: 614 VLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASM------- 666

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----SNQRTWYDMVYDSF 689
                 +     E  RLL   M RA  +L++    + +             ++++   + 
Sbjct: 667 ------RAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720

Query: 690 HNDERVKKIKLTNS--------------INKDEWIAYEWSTHHPENTPLEREETI----K 731
            + E V    ++                +      A + +      T L R         
Sbjct: 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF-------NRGL 784
              +   +     S    D ++   L PST+       L  L   +            G 
Sbjct: 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840

Query: 785 IIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
           ++H L                  +      A+ + A E       I   ++      A S
Sbjct: 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQ----WRAQS 896

Query: 843 CDSYSEVSVSGKINCPKKD-------IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIE 894
               +EV V   I+   +D       I + GR D++       + I + KT      + +
Sbjct: 897 RSELTEVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDD 956

Query: 895 HIPYTHIAQLSIYEKILKD---SYPNKSLVCLLIYV 927
                  AQL++Y+  + +      ++     L+YV
Sbjct: 957 AQQ---HAQLAMYQLAVAEGLVRAGDEPGGARLVYV 989


>gi|323526899|ref|YP_004229052.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
 gi|323383901|gb|ADX55992.1| UvrD/REP helicase [Burkholderia sp. CCGE1001]
          Length = 741

 Score =  194 bits (492), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 108/738 (14%), Positives = 217/738 (29%), Gaps = 129/738 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQ 60
            R  L +      I              +  +       G   + + A+   L  A    
Sbjct: 110 RRAALEMTRRVTRIATAALGTRAALAQGL-SWAGTFHSVGARLLREYAELIGLAPAFTIN 168

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++        + ++     +       +  ++  +     ++ +  + +   
Sbjct: 169 DREDSADLMNLVRHELGLSAKERRFPAKG--TCFAIYSRVVNTGASLGQVLE--SAFPWC 224

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +   A L +   L A Y +AK+K  VLD++DL++  + +  +  ++A     +    +H+
Sbjct: 225 REWEADLRM---LFAAYVDAKQKQSVLDYDDLLLYWSHMAAEPAIAAD----LSARFDHV 277

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF GA  + +L  
Sbjct: 278 LVDEYQDTNRLQASILLAL----------KPDGRGLTVVGDDAQSIYSFRGATVRNILDF 327

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                          + I L  ++RST  IL   + V  +       +  +      R  
Sbjct: 328 PAQF-------DPPATRITLERNYRSTQPILAASNAVIELASERYTKNLWTDKASAQRP- 379

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                              L   +  +  AR +   I       
Sbjct: 380 ----------------------------------RLVTVADEADQARYVVEQILEAREQG 405

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     ++ K   VL R    +  +            I  V        D + +KD
Sbjct: 406 ----------MKLKSQAVLFRAAHHSAALEIEL----TRRNIPFVKFGGLKFLDSIHVKD 451

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSE-------DDIFKICTQRHETETVYEYIQKF 473
           ++A+ R+  +  D ++   +++  L            DDI                    
Sbjct: 452 VLAVLRWAENPRDRVAGFRVVQ-LLPGVGPATAAKVLDDIVARAGAAAGDALATAAGALA 510

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
           A     + Q       +L+               +  +           +      D   
Sbjct: 511 AFAPPPRAQEDWHPFVKLMSSVYGRETPWPAEFEMVRRWYEPHLARNHEDAATRHADVLQ 570

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVF 589
              + +   +Y+S +  ++EL   PP      S     + + + + T+H+AKG E   VF
Sbjct: 571 ---MESIAGTYASRERFLTELTLDPPDATSDESGVPLVDEDYLILSTIHSAKGQEWRNVF 627

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +++                                                +   +E  R
Sbjct: 628 VLNGVDGCIPSDLGTGS----------------------------------EEDIDEERR 653

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           LLYV MTRA + L I          +++    +     +      +  +  T +  +   
Sbjct: 654 LLYVAMTRAKEDLHIVVPQRFYVHNQTHLGDRHVWASRTRFIPAHLMPLFDTYAWPRVPV 713

Query: 710 IAYEWSTHHPENTPLERE 727
            +   +           E
Sbjct: 714 PSAPSAAGLAAAAQARLE 731


>gi|317182762|dbj|BAJ60546.1| helicase [Helicobacter pylori F57]
          Length = 938

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 126/875 (14%), Positives = 265/875 (30%), Gaps = 184/875 (21%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           + F    +  LT      +    ++   + P L+ + ++ +++     +   +       
Sbjct: 240 DDFRGFLNSSLTWLEKKSEYRYFKKFKDEIPTLESECEEIENDLRCYYEARES------- 292

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHIL 181
            A           Y++A  K   LDF+ +    + LL   +   + +  +++D  I HIL
Sbjct: 293 -ALFKKFPKFIQLYDKATSKIQALDFDAIKDKVHALLNGYEEMPAEFFYFRLDSRIVHIL 351

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDTSL  ++++    ++   G       R++F VGD KQSIY F G+         
Sbjct: 352 IDEFQDTSLNDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYGFRGS--------- 402

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                   +  + F    LP + RS+  I+  V+ +F         +       +  S++
Sbjct: 403 --FSSLFESVSKDFYHDNLPFNHRSSPLIINYVNTIFKKAYQNSPTAYLEQKYPKASSNK 460

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             + G V++                                 +L  +I     N++    
Sbjct: 461 HARDGYVKVSLVA-------------------------DERELLLEQILQEAKNLLEH-- 493

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    +  KDI +L     D   I    +   +  + S   + +        I   
Sbjct: 494 --------RLDPKDITLLCATNDDALEIKNYLQKNLSAIRPSTESSAKLSQFVESKIIKN 545

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
                             +LK  L  +  DD   +     + E+V  ++ K         
Sbjct: 546 ALEYALAEEPYKPFYKHSVLK--LAGYLHDDAIALAGFNPKKESVAGFVWK--------- 594

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                                    +        Q          D  DEFL      E 
Sbjct: 595 ----------------------VMELFELYGECAQICLELAVGCEDA-DEFLKKLEAKEI 631

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            S+                            +IMT+H +KG++ P V + +   +  ++ 
Sbjct: 632 ASFKI-----------------------GGAQIMTIHKSKGMQFPYVIVCERLGKPKTNN 668

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              +     S  +   +   +   +  +   +  +   + +   E   + YV  TRA   
Sbjct: 669 S-NQFLEEYSNTELTRLYYRMKNREVVDKDYARALDKEEVAKDHEETNVYYVAFTRAELG 727

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           LI+         +K +                          + + E      S   P +
Sbjct: 728 LIVVAKDKKGMHEKLDL-----------------------APLEEGEIATVISSQKEPSS 764

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
             +  +                                   + + + +     +D +  N
Sbjct: 765 KSVLIKPHAYGEQ--------------------------VQEIEEEPSDYEKNNDQEAIN 798

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            G+ +HK L+       +  K  +  Y   +   +   +Y+ L  S+     +  +    
Sbjct: 799 FGIALHKGLEY--QYAYNIPKKSVLEYLNYHHGFYGL-DYQALEESLELFENDAKIQALF 855

Query: 842 SCDSYS-EVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYT 899
              +   EV+         + ++   RID +   ++  +++ +YK+  +          +
Sbjct: 856 KNLALRGEVAF------LFEGVV--SRIDVLLWDKRQNLYVLDYKSSQN-------YQQS 900

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
           H AQ+S Y   L+   P+  +   +IY +  ++  
Sbjct: 901 HKAQVSHYAAFLQTQAPHFKIQAGIIY-AHKRLLE 934


>gi|257469635|ref|ZP_05633727.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 1023

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 137/864 (15%), Positives = 278/864 (32%), Gaps = 156/864 (18%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTY----KMFKSTLASLTLAKYLNAHYEEAKKK 143
            ++  K  D+  +L+  +  + ++RD          +       L +   +   Y++ K +
Sbjct: 268  KVKSKKGDIDSELEDMKYIYGELRDNLAKTMYNNSVIPYEEKLLYILNRIYEVYDDIKFR 327

Query: 144  NCVLDFEDLIINTNDLLKK--------RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
                   D+   T   ++           V+      +D +I+ I IDE QDTS++QW++
Sbjct: 328  EKRFTHSDISSYTFKYIRDKELNFINENGVTDEFFEILDGKIDTIFIDEFQDTSILQWKI 387

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            ++ + +              +  VGDEKQSIY + G E K     ++I            
Sbjct: 388  LKDIIDQ----------TNNVICVGDEKQSIYGWRGGEKKLFENLEKII---------DG 428

Query: 256  SIIELPLSFRSTADILTVVDKVFSIP---ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +L   FRS  +I++  + +FS      + +   E+        S      G +++  
Sbjct: 429  KEEKLFTCFRSEKNIVSFTNMIFSNISKMSDREEFGEEPWNFYEVNSKSEDVSGHIEVLR 488

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            +                        +    + +  +I   I +                 
Sbjct: 489  K------------------------KSEEEATVIDQIIKRIKDNFNG------------N 512

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             + I +L R  K+  +I            I  V +    + D+  I  L +L  +++ + 
Sbjct: 513  YRGIGILGRTNKELDMIAEKLSE----ADIPYVIDSNSNIVDYRGINGLFSLINYLV-KN 567

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
            D L+ +   +S L N     +  +   R + E      +            V++ +  + 
Sbjct: 568  DYLALLDFFRSDLINIRVKALKYLIKNREDVEKYLNMEEAEILLDGVDL-EVLEIVRYIK 626

Query: 493  HIAQFCSPHD--FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                  +         IL       ++        I  +  F               +E 
Sbjct: 627  KEYLENNGETNFLTYDILKKAGIGGRY---NSKSDISNIYSFYKIIKSY-----KYFEEF 678

Query: 551  ISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF-LVDTGSQVFSHKHIKKMH 607
            I E E  +     K+    + N V IMT+H +KGLE   +F   +  S+  S  +++   
Sbjct: 679  IVEFEDKRNSDKFKKMVLEDDNSVNIMTIHKSKGLEFDTLFYYYNPSSRGSSRGNMRFFL 738

Query: 608  IMPSLNDDPGIPIWIPQSKSR----NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
             M    ++P   +       +         D +  ++   + E    LYV +TR  + L 
Sbjct: 739  KMDKEYNEPESFLITHDKFKKVIKSLGREYDYLADIEIKEKHEEINNLYVALTRPKNNLY 798

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            I          K N  +    + +    D  +   K    I+K++   +      PE   
Sbjct: 799  IA-----VENDKENLFSEALFISEDKIEDGDIVPNKSEKKISKEKKREFVLDLSTPEAEY 853

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
             + EE++++  ++                                     L +     RG
Sbjct: 854  NKAEESMEKEREKIYSHA--------------------------------LGNEIKRVRG 881

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAM 841
              +H  L+ I    + +         +K A +   K  K LL   +I  +L         
Sbjct: 882  TTVHFFLENIIHGTDEEVAFSKELTFSKFASVIGEKAIKELLSDENIEYILN--KNREIF 939

Query: 842  SCDSYSEVSVSGKINCPKKDIIISGRIDQIS------ISQQNIFIFEYKTHHHVPQEIEH 895
            S           ++    K      RID++        ++  ++I +YKT     +  E 
Sbjct: 940  SDKWDFIFP-EYEVFTEDKTF----RIDRLMIKMPNEETKGTVYIVDYKTG----ETDEE 990

Query: 896  IPYTHIAQLSIYEKILKDSYPNKS 919
                   Q+  Y+ +++    +K 
Sbjct: 991  -------QIENYKVLVEKLLEDKK 1007


>gi|299143903|ref|ZP_07036983.1| DNA helicase II [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518388|gb|EFI42127.1| DNA helicase II [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 605

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 99/557 (17%), Positives = 183/557 (32%), Gaps = 121/557 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   YE+ K KN ++DF+D+I     +LK  D   +IR K   + ++  +DE QDTS  Q
Sbjct: 162 LYNFYEQYKLKNGLIDFDDMITEALKILKTDD---YIRAKYKNKFDYYQLDEGQDTSFAQ 218

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+I+ L                +F V D+ QSIY+F GAEP  +L   +I +       
Sbjct: 219 FELIKYLCA----------PKNNIFIVADDDQSIYAFRGAEPNYLLNLNKIYKN------ 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                  L  +FRS+ +I+   +       N    +                        
Sbjct: 263 --LKTYYLQNNFRSSKNIVNTSNLFIKNNFNRFDKN------------------------ 296

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            +++Q+D          ++  D              I   I                   
Sbjct: 297 -IITQNDYLEPVNIIKLSTNDDEYN----------YIYDKI---------------TSEP 330

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K   ++ R    +  +          + I      +     H  +KD++ +  F  +  
Sbjct: 331 LKSYAIIYRNNLSSLGLIEFLERKNISFNIK---GAKLKFFSHFVVKDILLILEFSNNLS 387

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D   +  +        S+  I  +   ++  + +++ +  +        +++ K + E  
Sbjct: 388 DIEIYSKIYYKLNGYISKKHIDYLK--KNGGKNLFKTLLDYPLLPEYYRENIFKLMSEFK 445

Query: 493 HIAQFCSPHDFFTLILGAKKG--RQQFISRFGNEVIDVLDEF---LNFTLRNEQNSYSSL 547
            +      +     IL         +  ++      + L EF   L +    E+ +  +L
Sbjct: 446 TLKNLDFKYQ-IEYILNELGYDHYLREYAKKFGFSYESLREFAHYLKYIATFEK-NLDTL 503

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  LE     I      + + + I T+H+ KGLE   VF++D    V          
Sbjct: 504 LARLKYLEH----ITNTPKNSKSNITISTIHSIKGLEFNTVFVIDLVEGVLPSN------ 553

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                         HL     EE  RL YV MTRA ++L +   
Sbjct: 554 ----------------------------KSHLDDMLFEEERRLFYVAMTRAKNKLYLIYP 585

Query: 668 SNTSNEKKSNQRTWYDM 684
              +N +        ++
Sbjct: 586 KYHNNNECEISSFLTEL 602


>gi|90424242|ref|YP_532612.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90106256|gb|ABD88293.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
          Length = 687

 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 120/733 (16%), Positives = 227/733 (30%), Gaps = 130/733 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--QQASQTQ 60
            R    ++   E I +         VSD   +       G   + + A+ L    A    
Sbjct: 70  RRAAAEMSRRVERIVRKALGAQAGVVSDALTWAGTFHGIGARLLREHAEQLGLDPAFTIH 129

Query: 61  CIEERFSLLSSFFLTQKFTP-QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++       F+  +    T+             + + D  +     +     
Sbjct: 130 DREDSADLINLVRHELGFSKMESRFPTKGTCLSIYSRCVNAEAALDAVLGGSFPWCAGWS 189

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            +         K L A Y EAK+++CVLD++DL++     +     +A +        +H
Sbjct: 190 AE--------LKQLFAAYVEAKQRHCVLDYDDLLLYWAQAMADAGFAADVA----SRFDH 237

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++ +L            S   L  VGD+ QSIYSF  A  + +L 
Sbjct: 238 VLVDEYQDTNALQSSILLAL----------KPSGAGLTVVGDDAQSIYSFRAASVRNILD 287

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                         + +++ L  ++RST  IL+  + V  + +     +           
Sbjct: 288 FPNQFS-------PRATVVTLDRNYRSTQAILSAANGVIDLAKERFTKN----------- 329

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW    +    Q    ++               +  AR I   + +    
Sbjct: 330 ----------LWTDRAAGAAPQLVGVRD--------------EADQARYIVERVLDNREA 365

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             +           K   VL R    +  +            I  V        D   IK
Sbjct: 366 GALL----------KQQAVLFRTSSHSGPLEIEL----TRRNIPFVKFGGLKFLDAAHIK 411

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK--FANCG 477
           DL+AL RF+ +  D ++   +++  +         ++     E       + +       
Sbjct: 412 DLLALLRFVQNPRDRVAGFRLMQ-IIQGVGPTSAQRVLDHIAEAADPIAALSEAPAPPRA 470

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            + ++ ++  + +L   A    P +     L  +    +          D++       L
Sbjct: 471 AADWRDLVSTLLDLNRGA--GWPAELERARLWYEPHLDRIHEDAITRRADLIQ------L 522

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593
                 Y S +  ++EL   PP      +     + + + + T+H+AKG E   V++++ 
Sbjct: 523 EQIAGGYPSRERFLTELTLDPPDATSDQAGVPMLDEDYLILSTIHSAKGQEWKSVYVLNV 582

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                                                           +  EE  RLLYV
Sbjct: 583 VDGCMPSDLGTGSS----------------------------------AELEEERRLLYV 608

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            MTRA D L +          ++ Q   +     S    +R+  +    S  +    A  
Sbjct: 609 AMTRAKDDLHLVVPQRFFTHGQNAQGDRHVYASRSRFIPDRLLGLFERVSWPRVTAAAAA 668

Query: 714 WSTHHPENTPLER 726
                P      R
Sbjct: 669 AQRQGPRLDIGAR 681


>gi|297622299|ref|YP_003703733.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
 gi|297163479|gb|ADI13190.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093]
          Length = 1106

 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 82/524 (15%), Positives = 149/524 (28%), Gaps = 105/524 (20%)

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            SIY+F GA+ + +L  +              ++  L L++RS A +L + + V +  E  
Sbjct: 616  SIYAFRGADVRNILDFREDFP--------DAAVYRLELNYRSVASVLELANAVIAPNEGR 667

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                              G    V+L+     + +                         
Sbjct: 668  LEKRLRPV---------KGAGDKVRLYRAADHRAE------------------------- 693

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A  +A  I  +            R + AKD  VL R    + ++    R       I  
Sbjct: 694  -ADFVARQIERLQAE---------RGLSAKDFTVLYRTNSQSRVLEEALR----RAGIPA 739

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHET 463
                     +   +KD+++  R  L+  DD+++  +L  P     +     +        
Sbjct: 740  KIVGGVGFYERREVKDILSYARAALNPADDVAWRRVLNRPKRGIGKTSEETLVAFAAKRG 799

Query: 464  ETVYEYIQKFANCGI-----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                E +++            +    +  + +L   A+      F    +      Q   
Sbjct: 800  IRFSEALRRAEEPLRGTPALKRIGEFVALMDDLREAAETLPAAQFLQAAIDQSGYLQALK 859

Query: 519  SRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK------RAHSANH 569
                 E     + LDE +N     ++ +  S+ E + E                   A  
Sbjct: 860  DEKSFEAQGRIENLDELVNAVAEWQEETGGSIGEFLDEAALLASVDDRAVKAVNQGQAPE 919

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              V +MT+H AKGLE PVVFLV     +  H+                            
Sbjct: 920  EAVTLMTLHNAKGLEFPVVFLVGLEENLIPHRSSLASL---------------------- 957

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                           EE  RLLYVG+TRA + L +    +  +  ++        + D  
Sbjct: 958  ------------QEIEEERRLLYVGVTRAQELLFLVHCESRMSFGRTEFARPSRFLEDIP 1005

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
                +   +       +            P+             
Sbjct: 1006 KGMLQEIDVFGQELHAERLSKYSRAVWAPPKLGATGASAPASAE 1049



 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 23/219 (10%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +   +                L +      ++           T  +E    
Sbjct: 70  AAGELKERVAHLMGEAAKDLWVSTFHSACLRILRAYGGLIGLEPGFAIYDDTDQLEVLKE 129

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           +L          P+      +  K +     +L +  +                     L
Sbjct: 130 ILERVTGLGDANPRVLRALIDRAKSNLWTPAELAREGERVFGGMVAGLP----------L 179

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y    +    +DF D++  T +L ++      +  K+ Q    I +DE QD
Sbjct: 180 ELVAEVYERYSSRLRSVNAVDFNDILGRTVELFERFP---EVLEKVQQRAVFIHVDEYQD 236

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           T+  Q+ + R L           +    L  VGD  Q +
Sbjct: 237 TNTAQYRLTRLLA----------NKYANLMVVGDPDQCL 265


>gi|21223553|ref|NP_629332.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|9714472|emb|CAC01314.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 1222

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 114/827 (13%), Positives = 229/827 (27%), Gaps = 127/827 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLS 70
           +    +     L       +    +  +          A+ L++A          F+ L 
Sbjct: 159 AISTYHAFAGRLLTDHGLRLGLEPTSRLLADATRYQLAARVLREAPGPYPALTRSFADLV 218

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           S  L       ++++      +  DL+       D    +R      +      A+    
Sbjct: 219 SDLLALDGELAEHLV------RPEDLRAWDAGLLDTLDGVRLSNADLRKVPEAAAARREL 272

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y  AK++  +LDF D I  +  L    +V       +  +   +L+DE QDTS+
Sbjct: 273 ADLVIRYRAAKRRQDLLDFGDQIALSAQLAGLPEVGRV----LRDDYRVVLLDEYQDTSV 328

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q  ++  L            +   + AVGD  Q+IY + GA    +          A  
Sbjct: 329 AQRILLAGLFGG--------GTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHF---AHA 377

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            G+  +   L  + RS   +L + + +                       R    G   L
Sbjct: 378 DGRPAARQALSENRRSGGRLLDLANGL-------------------AEPLRAMHAGVEAL 418

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                            +           S+ +     IA ++++++ T           
Sbjct: 419 RP------------APGAERDGMVRCALLSTHAEEIDWIADSVAHLVRTGKA-------- 458

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +I VL R   D   I            + V       L     + DL+A+   +  
Sbjct: 459 --PGEIAVLCRTATDFAEIQGALVA----RDVPVEVVGLSGLLHLPEVADLVAVCEVLQD 512

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----------------------------E 462
              + S V +L  P +     D+  +  +                              E
Sbjct: 513 PGANASLVRLLSGPRWRVGPRDLALLGRRARLLVSHARVEGDDDPDRRLAEAVEGVDPSE 572

Query: 463 TETVYEYIQKFANCGIS----------------KFQHVIKYIHELIHIAQFCSPHDFFTL 506
             ++ + +  F    +                 +F  +   + EL   A      D    
Sbjct: 573 VISLADALDTFLETPLDGTGDDDGLPFSADARVRFARLATELRELR-RALSDPLMDVLHR 631

Query: 507 ILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTI- 561
           +L       +  +          + L  FL+           ++L   +  L        
Sbjct: 632 VLAVTGLEVELSASPHALAARRRETLSNFLDVAASFAAGDGEATLLAFLGFLRTAAQYEK 691

Query: 562 --KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLND 614
               A     N V+++T H +KGLE  VV +    +  F     ++       ++P    
Sbjct: 692 GLDNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSGQGREKWTAQGKVLPHGLR 751

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                +    S     +     + +K     E  RL YV  TR    L+   H    ++K
Sbjct: 752 GDAETLPDVASWDARGL-KAFHEAMKDHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQK 810

Query: 675 KSNQRTWY--DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
           K    + +   +          ++      + +++    +  +       PL+     ++
Sbjct: 811 KPRGPSDFLTALYEHCAAGHGEIEVWADEPAEDEENPALHRATADEVWPLPLDDAALARR 870

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
               + +   L      +   P                +      + 
Sbjct: 871 RSAAETVLAHLDGLAAREDGPPSAPATYEDPDWPPPPEDDEGLPEEA 917



 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/422 (10%), Positives = 96/422 (22%), Gaps = 36/422 (8%)

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +     L  L          I+        +     +H A   E   + L D        
Sbjct: 813  RGPSDFLTALYEHCAAGHGEIEVWADEPAEDEENPALHRATADEVWPLPLDDAALARRRS 872

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                 +  +  L      P   P +    +             + E +R        A  
Sbjct: 873  AAETVLAHLDGLAAREDGPPSAPATYEDPDWPPPPEDDEGLPEEAEPDR----AGDPAHW 928

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                 +    + E  +   +            +     +   +                 
Sbjct: 929  DSWTTERPAAAREAATAPESPAAPQAGPTVPHQAPPPEQPPGTAPVPAPARLTPEEARTV 988

Query: 721  NT-PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
             +   + +    +L+  ++   ++  P     ++   L         +            
Sbjct: 989  ASWDRDLDALTGELLRARESVTEVPLPASLTASQLLSLAADPDGFAQELARPMPRPPQPA 1048

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
              RG   H  ++                +      L   +E       I    +   +  
Sbjct: 1049 ARRGTRFHAWVE--------------ARFEPLTLPLLEPEELPGGDAEIADDHDLEFLKD 1094

Query: 840  AMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISISQQN----IFIFEYKTHHHVPQE 892
            A     Y+      V           ++ GRID +            I ++KT+     +
Sbjct: 1095 AFERTEYARRTPFRVEAPFQLSLAGRVVRGRIDAVYKEGDGDTATYEIVDWKTNRAATAD 1154

Query: 893  IEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                      QL++Y     +    P  S+    +YV   +V          A  ++   
Sbjct: 1155 P--------LQLALYRIAWAEQQHVPPASVTAAFLYVRTGEVVRPEGLPDRAALEKLLLA 1206

Query: 951  IP 952
             P
Sbjct: 1207 EP 1208


>gi|312140618|ref|YP_004007954.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311889957|emb|CBH49274.1| putative UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi
            103S]
          Length = 1105

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 120/1034 (11%), Positives = 279/1034 (26%), Gaps = 176/1034 (17%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            L+     E             V  ++ Y    +             L   +  +      
Sbjct: 103  LAAEHDPESPGVQPRATREPLVRTVHSYAFAVLRLQAAAHGNPPPRL--ITGAEQDAVLR 160

Query: 67   SLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             LL            + +     +   + +L+  + ++ +    +         +    A
Sbjct: 161  ELLRGDIADGGGMWPERLRPALGMTGFAVELRNLMLRANER--GLGPEDLIDLGYAHDKA 218

Query: 126  SLTLAKYLNAHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWIRYKI 173
                A    AHYE+                   LD  +LI               +  + 
Sbjct: 219  EWVAAGRFAAHYEQGMLLRGAVGMEAPEATAPALDAAELISAALTAFATD---RDLLRRE 275

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
               + H+L+D+ Q       +++R +           +   +    GD  Q+I++F GA+
Sbjct: 276  RARVRHLLVDDAQHLDPQAAQLVRLI----------GTGTASTAIAGDPDQAIFAFRGAD 325

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+              + G    +I L  +F                             
Sbjct: 326  PR--------FLTGLADRGDPAQVI-LDTNF----------------------------- 347

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              R   +     G +         H     P  E  T     +   S+ +  A  +A T+
Sbjct: 348  --RAAPAVARVAGRIAGLLPGNPPHRGAAVPVTEDDTDGRAVVRVLSTPAKEAALVADTL 405

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFIL 412
                             +   ++ ++ R     P +    R       + V        L
Sbjct: 406  RR---------AHLIDGVPWSEMAIVARS---VPRVLPPLRRALLSAGVPVTTAASELPL 453

Query: 413  TDHLAIKDLMALGRFILSQEDD-LSFVCMLKSPLFNF----------------------- 448
                 +  L+++ R ++  E      + +L  P+                          
Sbjct: 454  AKQHGVAGLLSVMRALVGGEFTGEDAIALLSGPIGGAEPVSLRRLRRGLRRVELASGGDR 513

Query: 449  -SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTL 506
             S + +  +     + + V   +    +      + V+K +      + +     +    
Sbjct: 514  DSAELLRALIVDGPDADGVAHLLPGLTDVESLSLRRVLKVLRRARVPLQRGRGIEEVLWA 573

Query: 507  ILGAKKGRQQFISR------FGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISEL-- 554
               A    +++ +        G +    LD      +      ++   + L   +  L  
Sbjct: 574  AWQATGLERRWAAASAFGGPIGAQADRDLDAVVALFDAAANYVDRLPRAQLSGFVDYLVE 633

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +  P        A+   V +++ H+A G +  VV ++     ++     +   +      
Sbjct: 634  QAIPGPAPMRAVASQETVTVLSAHSAAGRQWRVVVVLGVQEGLWPSLGARGTLLGTEELI 693

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +    +                         E  RL  V  +RA D L++    ++S + 
Sbjct: 694  EITSGLGEVDKTL----------SRTAPLLAEERRLFLVACSRARDSLLVTAVDSSSGDT 743

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSIN-----------------KDEWIAYEWSTH 717
            +  +  + D +     + +  +   +T+                      +    +    
Sbjct: 744  ELVRSRFVDDLLRGADDLDVDEVAPVTDDTPRVLALPALVAELRSVVCDPDVAVADPERQ 803

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIK-----NDINEPYILNPSTIDTKGKTNLES 772
                  L R                  +P       +  + P  L+PSTI+      L  
Sbjct: 804  QRAAHQLARLAEAGVRGAHPDQWYGTSAPSSDVGLWDPEDGPVPLSPSTIELIANCPLRW 863

Query: 773  LLSDNQT-------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
            +L  +            G ++H L+Q +       + +        +  L      +  L
Sbjct: 864  MLERHGGSDGDNTHAIAGTLVHTLVQALAGHIPPDQVDHALETAWDSVDLGSEWFSRREL 923

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD-------IIISGRIDQISIS-QQN 877
                 +L+N       +    +E+ V   ++   +        + I GRID++       
Sbjct: 924  ERTRGMLDNFADWLRGTRSELTEIGVEVAVDGVLEPRTEGEATVRIRGRIDRLERDSDGR 983

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD-----SYPNKSLVCLLIYVSEPKV 932
              + + KT      + +       AQL+ Y+             ++     L++V++P  
Sbjct: 984  PVVIDVKTAKAAVTKEQAEQ---HAQLAAYQVAAARGLIDGVPASQPGGARLVFVAKPHK 1040

Query: 933  FIIPQNKLNKAFAE 946
                  ++  A  +
Sbjct: 1041 KEGSTQRIQSALDD 1054


>gi|290957554|ref|YP_003488736.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260647080|emb|CBG70179.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 1223

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/807 (13%), Positives = 226/807 (28%), Gaps = 132/807 (16%)

Query: 38  SMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            +          A+ L+++          F  L    LT      ++++  E        
Sbjct: 144 RLLADATRYQLAARVLRESPGPYPALTRSFPDLVGDLLTLDAELAEHLVRPEDLTAHD-- 201

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                +   E   +       +      A+      L   Y  AK++  +LDF D I  +
Sbjct: 202 ----IELLRELEGVALTNADLRKVPEAAAARRELTELVVRYRAAKRERDLLDFGDQIALS 257

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L    +V   +R +       +L+DE QDTS+ Q  ++  L            +   +
Sbjct: 258 ARLAGLPEVGRVLRDE----FRVVLLDEYQDTSVAQRVLLAGLFGG--------GTGHPV 305

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            AVGD  Q+IY + GA    +          A   G++ +   L  + RS   +L + + 
Sbjct: 306 TAVGDPCQAIYGWRGASVANLDDFPDHF---AHPDGRRATRQALSENRRSGGRLLDLANG 362

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +      A+ L          R +R  +   V     + +  +                 
Sbjct: 363 L------AEPLRAMHAGVEALRPARGAERDGVVRCALLNTHAEEL--------------- 401

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                       +A +I++++ T            +  +I VL R   D   I       
Sbjct: 402 ----------DWLADSIAHLVRTGK----------EPGEIAVLCRTAGDFAEIQGALVA- 440

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                + V       L     + DL+A+   +     + S V +L  P +     D+  +
Sbjct: 441 ---RDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALL 497

Query: 457 CTQRHETETVYEYIQKFANCGIS------------------------------------- 479
             +     +                                                   
Sbjct: 498 GRRARRLVSHARVDGDQDPDRRLAAAVEGVDPSEVVSLADALDTFLELPLEAEREDDGLP 557

Query: 480 -------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
                  +F  +   + +L   +      D    +L       +  +          + L
Sbjct: 558 FSPDARVRFARLATELRDLR-RSLADPLMDVLHRVLAVTGLEVELSASPHALAARRRETL 616

Query: 530 DEFLNFTLRNEQN--SYSSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLE 584
             FL+       N    ++L   +  L            A     N V+++T H +KGLE
Sbjct: 617 SNFLDIAASFAANSAGEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHRSKGLE 676

Query: 585 SPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
             VV +    +  F     ++       ++P         +    +     +     + +
Sbjct: 677 WDVVAVPGLVTGTFPSTQGREKWTAQGKVLPHTLRGDADTLPDVGAWDSRGL-KAFQEAM 735

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY--DMVYDSFHNDERVKK 697
           K     E  RL YV  TR    L+   H    ++K+    + +   +          ++ 
Sbjct: 736 KDHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRPRGPSDFLTALHDHCAAGYGEIEA 795

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
                    +    +  +  H    PL+    +++      +   L     ++  +P   
Sbjct: 796 WADEPGEGAENPALHRSAADHAWPLPLDDTALLRRRAAAATVLAHLERAASHEGTDPADH 855

Query: 758 N----PSTIDTKGKTNLESLLSDNQTF 780
                 S   +    +      D + F
Sbjct: 856 ASGHPFSDHPSSDHPDWPPPSDDEEPF 882



 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 64/308 (20%), Gaps = 50/308 (16%)

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
              ++          D    S      V   +           A   +  HP  + L  EE
Sbjct: 898  PPADAFGDPGEDTGDWDSWSSDRPPHVVHAREDPPEQDARPPAVPHARRHPAASGLSPEE 957

Query: 729  TIKQLMDEQKIPKKLFS-------------PIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                   ++ +                   P      +   L         +        
Sbjct: 958  ARTVASWDRDLDALAGELLRARAKVTDVPLPASLTAAQLMRLAADPDGFAQELARPMPRP 1017

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
                  RG   H  ++                +      +    E       I    +  
Sbjct: 1018 PQPAARRGTRFHAWVE--------------ARFEELRLPMLEPGELPGSEAEIADERDLE 1063

Query: 836  MMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRIDQISI----------SQQNIFIFE 882
             +  A         +   V           ++ GRID +                  I +
Sbjct: 1064 ALKEAFERTPYAHRTPYRVEEPFQLGIAGRVVRGRIDAVYRLGDGDGGSDGDGTTYEIVD 1123

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKL 940
            +KT      +          QL++Y     +    P +S+    +YV    V        
Sbjct: 1124 WKTSRTRNADP--------LQLAVYRLAWAEQQGVPLESVKATFLYVRTGDVVRPENLPD 1175

Query: 941  NKAFAEIS 948
              A   + 
Sbjct: 1176 RDALERLL 1183


>gi|291458763|ref|ZP_06598153.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291418680|gb|EFE92399.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 1234

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 85/478 (17%), Positives = 176/478 (36%), Gaps = 44/478 (9%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQT 52
           L++  G  L+ S + + + L       +S++ + +S+++E   P          ++  + 
Sbjct: 192 LRDAEGKDLSLSEDYLLQSLKSRMEDLLSELEEALSIAVEEDGPGEYLPMLEEDVRALKK 251

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L   S+        S +S   L    +P+K      +        +KL+           
Sbjct: 252 LSGISELPLFLSELSEISFSRLKATKSPKKEAA-AGLRNGVKKELQKLQGRLFLPEGAER 310

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL----KKRDVSAW 168
                 + +S    L+L       +   KK+  +LDF DL     ++L    ++    + 
Sbjct: 311 EAMQEGLSESIHVLLSLTAEFRECFASEKKRRKILDFSDLEHRALEILYIEDEEGRRPSP 370

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
              +  ++   ILIDE QD++ +Q E++++L+ +             +F VGD KQSIYS
Sbjct: 371 AADEYARQFREILIDEYQDSNFVQEELVKALSAE-------RFGRPDVFQVGDVKQSIYS 423

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F  A P   L + R           ++  +EL  +FRS  ++L  V+++F     A+   
Sbjct: 424 FRLARPDLFLGKYRD---------SQYPKVELSKNFRSREEVLRSVNQLFFRLMRAEVGG 474

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
            D T     R+ R       +    + ++     +                  +   AR 
Sbjct: 475 VDYTEEASLRAGRSDFPPAGER--DLRTELLLVESGAAGEEEEEDGEGEALGKSEAEARL 532

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I ++               + +DI++L+R              L  +  I      
Sbjct: 533 IAGRIRSLREEG----------YRYRDIVILLRSPGAWA---DELTELLGNAGIPAYSIS 579

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  + ++ ++A    I +    +    ++ SP++ FS++++ +I        + 
Sbjct: 580 GTGFFRAVEVEIILAFLAVIDNPRQSIPLASLMHSPIYGFSDEELARIAAAGGIERSF 637



 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 80/534 (14%), Positives = 159/534 (29%), Gaps = 73/534 (13%)

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDE 531
                   K +   + +     +++  S H+    I               G +    LD+
Sbjct: 704  LPEELSRKLRLFRESLDHYRELSRVLSIHELLYRIYEESGYYHYVSAMPGGRKRRANLDQ 763

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESP 586
             ++  L  E +SY  L + I  +E+                  + VRI++VH +KGL+ P
Sbjct: 764  LIDSALSFEASSYGGLFDYIRYIERLRKENADQGEAAIYSEQDDLVRILSVHRSKGLQFP 823

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VV L     +        K+ I P L           + +  +     + +  +     E
Sbjct: 824  VVILSGLNKRFNKRNLSGKVLIDPDLGIGADYIDPERRIRYPSLQRMAIREKQENEQLGE 883

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNE-----------------KKSNQRTWYDMVYDSF 689
              R+LYV MTRA  +LI+        +                 +  +  +  D +  + 
Sbjct: 884  ELRVLYVAMTRAEQRLIMTASVTDMEKSVKKAEEAAGRGRLSAGRIRSASSMLDWILMAG 943

Query: 690  HND---------------------------------------ERVKKIKLTNSINKDEWI 710
             +                                        E +      ++  +    
Sbjct: 944  GDSLLRSGSSGAIRLDSFARGELIESGKELLRRSVRLSSELTEALSDFDPEDAELQRLVR 1003

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN--EPYILNPSTIDTKGKT 768
             +++   H + T L  + ++ ++ +  + P +   P   +        L  +   +    
Sbjct: 1004 RFDFRYPHEDATKLFPKYSVSEIGESGEQPAEAVLPAPMERPDFPSDTLREAGALSSENG 1063

Query: 769  NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
              E          RG   H+ L     L              +   L   + +++ L S 
Sbjct: 1064 GGEKENEKTPGARRGDAYHRALSRYDYLAGGGSGQLRALLTEEEYALIDPESFQHFLDSE 1123

Query: 829  T--RLLENPMMTTAMSCDS-YSEVSVSGKINCPK--KDIIISGRIDQISISQQNIFIFEY 883
                  E               +V  S         + +++ G ID   +S+  I + +Y
Sbjct: 1124 LGREFREAAEKGMLFREQRFMKQVPFSYLFPESGITEPVLLQGVIDAFFLSENGITLVDY 1183

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFIIP 936
            KT     +  E +   +  QLS+Y   L       S+   LIY  S  +   + 
Sbjct: 1184 KTDRT--KSEEQLRRRYERQLSLYADALCGI-SGHSVRRKLIYSFSLGRAIELS 1234


>gi|116250378|ref|YP_766216.1| uvrD ATP-dependent helicase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115255026|emb|CAK06100.1| putative uvrD ATP-dependent helicase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 685

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/665 (15%), Positives = 192/665 (28%), Gaps = 127/665 (19%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQCIEERFSLLS 70
            E I +D+       ++D   +       G   +   A+   L         E+   L++
Sbjct: 77  VERICRDVLGSNAGVMADALSWSGTFHGIGARLLRDYAEQIGLDPGFTIHDREDSADLMN 136

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-L 129
                     + ++   +   + P     L                 +      A+    
Sbjct: 137 LI--------RHDLGFSKTESRFPTKGTCLAIYSRAVNSETALDLVLRDVFPWCATWEKQ 188

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + L A Y EAK+   VLD++DL++    ++ +    A I   I    +H+L+DE QDT+
Sbjct: 189 LRELFACYVEAKQSQNVLDYDDLLLYWAQMVGE----AMIAEDIGSRFDHVLVDEYQDTN 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++ +L              + L  VGD+ QSIYSF  A  + +L           
Sbjct: 245 RLQASILLAL----------KPQGQGLTVVGDDAQSIYSFRAATVRNILDFPAAFS---- 290

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 +I+ L  ++RST  IL   + V  +       +  +      R           
Sbjct: 291 ---PAANIVTLDRNYRSTQPILAAANAVIDLASERFTKNLWTERQSADRP---------- 337

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                     L      +  AR +A  + +              
Sbjct: 338 -------------------------RLVTVRDEAEQARYVADMVLDNREEG--------- 363

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +  K   VL R    +  +            I  V        D   +KD++A  RF  
Sbjct: 364 -LTLKQQAVLFRASHHSGPLEVEL----TRRNIPFVKFGGLKFLDSAHVKDMLAALRFAQ 418

Query: 430 SQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           +  D ++   +++  P    S             +                 +   +  +
Sbjct: 419 NPRDRVAGFRLMQILPGVGPSTAQKTLDLMAEDASPISALAAMPAPPRSGEDWTMFVSML 478

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            EL                  A    +  +          L +          + Y+S +
Sbjct: 479 QELKTGKAGWPAEIGLARQWYAPHLER--LHEDAATRQADLLQLEQIA-----SGYASRE 531

Query: 549 ELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             ++EL   PP      +     + + + + T+H+AKG E   VF+++            
Sbjct: 532 RFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWTRVFMLNVVDGCIPSDLAV 591

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                +  EE  RLLYV MTRA D L +
Sbjct: 592 GTT----------------------------------AEIEEERRLLYVAMTRARDGLDL 617

Query: 665 CKHSN 669
                
Sbjct: 618 VVPQR 622


>gi|73539989|ref|YP_294509.1| UvrD/REP helicase [Ralstonia eutropha JMP134]
 gi|72117402|gb|AAZ59665.1| UvrD/REP helicase [Ralstonia eutropha JMP134]
          Length = 725

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 100/671 (14%), Positives = 188/671 (28%), Gaps = 119/671 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--QQASQTQ 60
            R    +    E I                ++       G   + + A+TL    A    
Sbjct: 106 RRAAAEMGRRVERIVDQALGTNTGAGRAALQWSGTFHAIGARLLREYAETLGLSPAFTIC 165

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              +   L+         + Q +   ++  +    +  ++  +Q     +         F
Sbjct: 166 DRGDAADLMHVVRHDLGLSEQASRFPKK--ETCLSIYSRVVNTQAPLEDVLK-----HWF 218

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                 +   + L A Y EAK+K  VLD++DL++     L +  ++      +    +HI
Sbjct: 219 PRYTMWVDALRTLFAGYVEAKQKQQVLDYDDLLLYWAQALTEPAIAQD----MGARFDHI 274

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIY+F GA  + +L  
Sbjct: 275 LVDEYQDTNALQASILLAL----------RPDGRGLTVVGDDAQSIYAFRGATVRNILDF 324

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            + L  ++RST  IL   + V  +          S  T      
Sbjct: 325 PAQF-------TPAAHQVTLSQNYRSTQPILHAANAVIGLAAERYTKDLWSERT------ 371

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
              + G V +                             +  +  AR +   +       
Sbjct: 372 SAEKPGVVVV-----------------------------NDEADQARFVVERVLERREAG 402

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +      VL R    +  +            I  V        +   +KD
Sbjct: 403 ----------LSLMSQAVLFRAADHSAQVEIEL----ARRNIPFVKFGGLKFLESTHVKD 448

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEYIQKFANCGI 478
            MA+ R++ +  D ++    L+  L         ++                 +      
Sbjct: 449 AMAVVRWLENPLDRIAGFRTLQ-LLPGIGPKTAARVLDALAVATEPLFALESFEPPPAAA 507

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +  ++     L+  A        F  ++   +   + I       +  L +       
Sbjct: 508 PAWTDLLTLARTLLGPA--SPWPSEFEQVVAWYQPHLERIHDDAAARMADLQQLERIAAT 565

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                   L EL  +              + + + + T+H+AKG E   V++++      
Sbjct: 566 YASRE-RFLTELTLDPPSASSDESGVPLRDEDFLILSTIHSAKGQEWKAVYVLNAVDGCM 624

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                             RLLYV MTRA
Sbjct: 625 PSDLATGTTEEIEEE----------------------------------RRLLYVAMTRA 650

Query: 659 SDQLIICKHSN 669
            D L +     
Sbjct: 651 KDHLDVVVPQR 661


>gi|215413075|ref|ZP_03421776.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|294993861|ref|ZP_06799552.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210]
 gi|298526679|ref|ZP_07014088.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           94_M4241A]
 gi|298496473|gb|EFI31767.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           94_M4241A]
 gi|326902571|gb|EGE49504.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148]
          Length = 1055

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/996 (11%), Positives = 259/996 (26%), Gaps = 180/996 (18%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS--------FFL 74
               +   +    S +         +    L +   +   +     L +           
Sbjct: 83  RAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGPAATT 142

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T     +  + T     +  +L  +  +       +          +        A    
Sbjct: 143 TWPAHLRPALTTAGFATELRNLLARCAE-----RGLDPLELQQLGRRRGRPEWIAAGQFA 197

Query: 135 AHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             YE+                   L   +L+    +      V   +       +  +L+
Sbjct: 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFA---VDPELLAAERARVRTLLV 254

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           D+ Q        ++R L     +              GD  Q+++ F G EP  +L    
Sbjct: 255 DDAQQLDPQAARLVRMLAAGTELA----------LIAGDPNQAVFGFRGGEPTGLLA--- 301

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                    G     + L +S R    +   V  +               T     S  +
Sbjct: 302 --DDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTV 359

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              G+                                      A   A  I++ +    +
Sbjct: 360 RLAGS--------------------------------------AHAEAAMIADALRRAHL 381

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   +    + V+VR       +               VG     L+   A++ L+
Sbjct: 382 ID-----GVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGG---PLSAEPAVRALL 433

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT----------QRHETETVYEYIQK 472
            +        D    + +L  P+       + ++             R   + + E +  
Sbjct: 434 TVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGG 493

Query: 473 FANCGIS---KFQHVIKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGN- 523
            A          + V   +       +  S     P             ++++++   + 
Sbjct: 494 DAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHG 553

Query: 524 -----EVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVR 573
                +    L+      + T     + S +SL+ L+  +       ++   +A   +V 
Sbjct: 554 GAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVM 613

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +++ H A G E  +V +      ++ +   +   +      D    +    S        
Sbjct: 614 VLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASM------- 666

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----SNQRTWYDMVYDSF 689
                 +     E  RLL   M RA  +L++    + +             ++++   + 
Sbjct: 667 ------RAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWAD 720

Query: 690 HNDERVKKIKLTNS--------------INKDEWIAYEWSTHHPENTPLEREETI----K 731
            + E V    ++                +      A + +      T L R         
Sbjct: 721 GDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGA 780

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF-------NRGL 784
              +   +     S    D ++   L PST+       L  L   +            G 
Sbjct: 781 DPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGS 840

Query: 785 IIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
           ++H L                  +      A+ + A E       I   ++      A S
Sbjct: 841 VLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQ----WRAQS 896

Query: 843 CDSYSEVSVSGKINCPKKD-------IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIE 894
               ++V V   I+   +D       I + GR D++       + I + KT      + +
Sbjct: 897 RSELTKVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDD 956

Query: 895 HIPYTHIAQLSIYEKILKD---SYPNKSLVCLLIYV 927
                  AQL++Y+  + +      ++     L+YV
Sbjct: 957 AQQ---HAQLAMYQLAVAEGLVRAGDEPGGARLVYV 989


>gi|325675755|ref|ZP_08155439.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
 gi|325553726|gb|EGD23404.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707]
          Length = 1094

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 120/1034 (11%), Positives = 279/1034 (26%), Gaps = 176/1034 (17%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            L+     E             V  ++ Y    +             L   +  +      
Sbjct: 92   LAAEHDPESPGVQPRATREPLVRTVHSYAFAVLRLQAAAHGNPPPRL--ITGAEQDAVLR 149

Query: 67   SLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             LL            + +     +   + +L+  + ++ +    +         +    A
Sbjct: 150  ELLRGDIADGGGMWPERLRPALGMTGFAVELRNLMLRANER--GLGPEDLIDLGYAHDKA 207

Query: 126  SLTLAKYLNAHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWIRYKI 173
                A    AHYE+                   LD  +LI               +  + 
Sbjct: 208  EWVAAGRFAAHYEQGMLLRGAVGMEAPEATAPALDAAELISAALTAFATD---RDLLRRE 264

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
               + H+L+D+ Q       +++R +           +   +    GD  Q+I++F GA+
Sbjct: 265  RARVRHLLVDDAQHLDPQAAQLVRLI----------GTGTASTAIAGDPDQAIFAFRGAD 314

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+              + G    +I L  +F                             
Sbjct: 315  PR--------FLTGLADRGDPAQVI-LDTNF----------------------------- 336

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              R   +     G +         H     P  E  T     +   S+ +  A  +A T+
Sbjct: 337  --RAAPAVARVAGRIAGLLPGNPPHRGAAVPVTEDDTDGRAVVRVLSTPAKEAALVADTL 394

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFIL 412
                             +   ++ ++ R     P +    R       + V        L
Sbjct: 395  RR---------AHLIDGVPWSEMAIVARS---VPRVLPPLRRALLSAGVPVTTAASELPL 442

Query: 413  TDHLAIKDLMALGRFILSQEDD-LSFVCMLKSPLFNF----------------------- 448
                 +  L+++ R ++  E      + +L  P+                          
Sbjct: 443  AKQHGVAGLLSVMRALVGGEFTGEDAIALLSGPIGGAEPVSLRRLRRGLRRVELASGGDR 502

Query: 449  -SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTL 506
             S + +  +     + + V   +    +      + V+K +      + +     +    
Sbjct: 503  DSAELLRALLVDGPDADGVAHLLPGLTDVESLSLRRVLKVLRRARVPLQRGRGIEEVLWA 562

Query: 507  ILGAKKGRQQFISR------FGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISEL-- 554
               A    +++ +        G +    LD      +      ++   + L   +  L  
Sbjct: 563  AWQATGLERRWAAASAFGGPIGAQADRDLDAVVALFDAAANYVDRLPRAQLSGFVDYLVE 622

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +  P        A+   V +++ H+A G +  VV ++     ++     +   +      
Sbjct: 623  QAIPGPAPMRAVASQETVTVLSAHSAAGRQWRVVVVLGVQEGLWPSLGARGTLLGTEELI 682

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +    +                         E  RL  V  +RA D L++    ++S + 
Sbjct: 683  EITSGLGEVDKTL----------SRTAPLLAEERRLFLVACSRARDSLLVTAVDSSSGDT 732

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSIN-----------------KDEWIAYEWSTH 717
            +  +  + D +     + +  +   +T+                      +    +    
Sbjct: 733  ELVRSRFVDDLLRGADDLDVDEVAPVTDDTPRVLALPALVAELRSVVCDPDVAVADPERQ 792

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIK-----NDINEPYILNPSTIDTKGKTNLES 772
                  L R                  +P       +  + P  L+PSTI+      L  
Sbjct: 793  QRAAHQLARLAEAGVRGAHPDQWYGTSAPSSDVGLWDPEDGPVPLSPSTIELIANCPLRW 852

Query: 773  LLSDNQT-------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
            +L  +            G ++H L+Q +       + +        +  L      +  L
Sbjct: 853  MLERHGGSDGDNTHAIAGTLVHTLVQALAGHIPPDQVDHALETAWDSVDLGSEWFSRREL 912

Query: 826  LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD-------IIISGRIDQISIS-QQN 877
                 +L+N       +    +E+ V   ++   +        + I GRID++       
Sbjct: 913  ERTRGMLDNFADWLRGTRSELTEIGVEVAVDGVLEPRTEGEATVRIRGRIDRLERDSDGR 972

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD-----SYPNKSLVCLLIYVSEPKV 932
              + + KT      + +       AQL+ Y+             ++     L++V++P  
Sbjct: 973  PVVIDVKTAKAAVTKEQAEQ---HAQLAAYQVAAARGLIDGVPASQPGGARLVFVAKPHK 1029

Query: 933  FIIPQNKLNKAFAE 946
                  ++  A  +
Sbjct: 1030 KEGSTQRIQSALDD 1043


>gi|162448347|ref|YP_001610714.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So
           ce 56']
 gi|161158929|emb|CAN90234.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So
           ce 56']
          Length = 1254

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 118/778 (15%), Positives = 222/778 (28%), Gaps = 46/778 (5%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
              +    I + L  L                   +   L +     +  +         
Sbjct: 211 DPFDRERAIDEILDRLAALADLGAEADREGDYLAQSLRNLDRYLAELRRREEVTGGRDHD 270

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L +         +               + ++   +D      D   T           
Sbjct: 271 GLEAELGDVARWKEWRWKGSGKAFGGDLTRAEVLAQRDRVKVELDAVLTAASADLAACLS 330

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              +     Y+  K +   LDF DL++   DLL+       +R +++   +H+ +DE QD
Sbjct: 331 RELRPPIEAYDALKARAGKLDFLDLLLCARDLLRSS---RGVREELNLRFSHLFVDEFQD 387

Query: 188 TSLIQWEVIRSLTEDFFVGKN---THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           T  +Q E++  L  D     +       P  LF VGD KQSIY F  AE       K   
Sbjct: 388 TDPLQAEILLLLAADDLSEADWTRARPVPGKLFVVGDPKQSIYRFRRAEVALYEATKARL 447

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE----NAQGLSEDSTTTIRHRSS 300
                      S++ L  SFRS   I   V+  F+            +      +     
Sbjct: 448 VA------CGASVLYLSTSFRSAPSIQEAVNAAFAPLMQGGTAEGERAATQARYVALERF 501

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
           R        +    V +         +            +    L    A   + + G  
Sbjct: 502 RDDPPEQPTVIALPVPRPYGDFGKISDFRVRQSIPDAVGAFVHHLIHGGAGAGAALDGDG 561

Query: 361 -------TIFSNGKKRVIQAKDILVLVRK--RKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                       G++  ++A+ I +L ++             R L+    I  V      
Sbjct: 562 ARRWTVTERERPGQRVPLEARHICLLFKRFQTFGEDATRAYVRALEARR-IPHVLVGGRS 620

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY---- 467
             D   +  + +    I   +D+LS    L+ PLF  ++D +     +      ++    
Sbjct: 621 FHDREEVMAVRSALLAIEWPDDELSVYATLRGPLFALTDDVLLLYRDRFRRLHPLFQPPD 680

Query: 468 ----EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFG 522
               +   +     + +    +  +  L          D    +L   +          G
Sbjct: 681 DGSLDLAVEGGARPLREVAEALAVLGRLHRERNRRPIADTLGGLLDETRAHAGIAIWPTG 740

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVH 578
            + +  +   ++   R E    +S +  +  LE      + A           VRIMTVH
Sbjct: 741 EQALANVLRVMDLGRRFEAAGATSFRAFVERLELDAERGEVAEAPVVEEGTEGVRIMTVH 800

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGLE PVV L D  S        + +       D        P +      + +    
Sbjct: 801 RAKGLEFPVVILADPASPAVHQLPSRHV-------DPELGLWAEPIAGCVPAELVERRDE 853

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           + +  +EE  RL YV  TRA + L++    +      ++      +    +      +  
Sbjct: 854 VLRRDREEAVRLAYVAATRARELLVVPAVGDARPGDGTSDGWLDVLHPVLYPAPRERRSP 913

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
           +    +    +               ER+              ++       ++    
Sbjct: 914 RRCEDLGCPPFGTDTVLERPARCEADERDAVAPGEHAPMAGSHRVVWWDPGALDLDRE 971



 Score = 51.5 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
              + W            T   R +T  ++  E        +              +  + 
Sbjct: 1026 GHEAWQEARQRAIVDGATAAVRVKTATEISHEAAEAAAAAAGAGAAAARRSGGGAARGER 1085

Query: 765  KGKTNLESLLSDNQTFN-------RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                 + S                 G ++H +L  +           + +         P
Sbjct: 1086 ADALPVISFEQTEIAREGRPYGKRFGTLVHAVLAEVDLRAGEDEVRTVAA-AQARLLGAP 1144

Query: 818  AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII-SGRIDQISISQ- 875
            A+E    + +    L++P++  A    +         +    +D  I  G +D       
Sbjct: 1145 AEELDAAVAAAVAALDHPLLRRAAESAARGACERETPLLLRLEDGTIAEGIVDLSFRESV 1204

Query: 876  ---QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
                   + ++KT                AQ+ +Y + + ++   +
Sbjct: 1205 GDVGVWTVVDFKTGSDAGTAHAAQ----EAQVRLYVQAIAEATGER 1246


>gi|167957199|ref|ZP_02544273.1| DNA-dependent ATPase I and helicase II [candidate division TM7
           single-cell isolate TM7c]
          Length = 811

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/707 (15%), Positives = 231/707 (32%), Gaps = 115/707 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           GL+  E  + I  D   +      DI +  +  +      +          S  +  E+ 
Sbjct: 161 GLTPAE-LKTIIADNQRIIDEVAPDIQQIFATKISKKTIELFAPLAEKIAKSIGKNPEKE 219

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            S L S           ++          +  + L   ++++ +   +        +T  
Sbjct: 220 NSNLPSSITPYANVLALSVAHAAQEAIDANSTKPLTAWKNKWCEKNAKGEFILKDSATAD 279

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            L+    +   Y E      + D++D+I++     +K      +R  + ++   I++DE 
Sbjct: 280 KLSAVVDVYEKYIEVLSDRSLFDYDDMILSVIQACEKHPE---LRANLQEQFQFIMVDEF 336

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+L Q  ++ +LT D         +   + AVGD+ Q+I+SF GA+   + R ++   
Sbjct: 337 QDTNLAQLRLLFNLTSD-------DDNNPNIMAVGDDDQAIFSFQGADVGNIQRFRQHYH 389

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      II L  ++RS  +ILT   +V +   +    + D  +  +  +    Q 
Sbjct: 390 --------DPKIIVLTDNYRSAENILTSARQVITQGSDRLENTIDGLSK-QLTAHADSQG 440

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
             V++ E   +  +                             +A  I+ +I +     N
Sbjct: 441 SRVEVQEFSSTSEERAG--------------------------VAKQIAQLIQSGEKPEN 474

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                       + +  R    LI            I+V       + +   I+ L  L 
Sbjct: 475 ------------ITLIARHHKELIE--ILPYLYRENIAVNYERHDDILEQNVIQILDKLA 520

Query: 426 RFILSQEDDLSFVC------MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           R I++   +   +       ++  P F FS  DI+K+    ++   ++      +    S
Sbjct: 521 RVIVAIHQNDLSLANSLLPEIIAHPAFGFSTSDIWKLSLHAYKNRQLW----LESMLANS 576

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI------------- 526
            F+   +++ +           +    +LG     +       +                
Sbjct: 577 TFKEFGEWLLDRAKDVPNLPLEEHLDNLLGLTIDSENNNPSIISIASFYFPPEKLEKNPD 636

Query: 527 ------DVLDEFLNFTLRNEQNSYSSLQELISELEQ------YPPTIKRAHSANHNEVRI 574
                 + L            +   +L++ +  ++           I+   S+    + +
Sbjct: 637 TYLTTLESLRTLRQKLRDRITDKNPTLEDFLEFIDLHISTKTRLTQIRPHASSIRGAINL 696

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT H +KGLE P VF+V      +  K   +  ++                       ++
Sbjct: 697 MTAHKSKGLEFPHVFVVGAIDSAWGEKVRTRSRLIR--------------------YPAN 736

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           L      +T +E  RL +V MTRA   L +       +   +   ++
Sbjct: 737 LQLQPAGATYDERLRLFFVAMTRAKSTLTMTYSQTNDSGSDTIIASF 783


>gi|255034727|ref|YP_003085348.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
 gi|254947483|gb|ACT92183.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053]
          Length = 932

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 115/802 (14%), Positives = 245/802 (30%), Gaps = 156/802 (19%)

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             YE   K+NC  DF  ++    D L++      +  KI +++ ++++DE QD + IQ  
Sbjct: 181 QKYEGLLKENCYFDFTMIMTEAIDKLQE---KRDLYNKIKKDLKYLIVDEYQDINPIQGI 237

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +I  L +              +  VGD+ Q+IY + G+    +       +         
Sbjct: 238 LINQLYQVA---------KPVITVVGDDDQNIYQWRGSNSSFIKDFLHDYE--------P 280

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              I L  +FRS+  +  + + + S  +                               +
Sbjct: 281 AHEIILDRNFRSSKGVTALAETIISRNDRIPK-------------------------SMI 315

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
            ++  +        +  +  ++ +      +A+ I         ++    N  +R +   
Sbjct: 316 SAEKQTFSKNNDVLYNEFVSTVEENG---TIAQMIVDLRGTPFKSNVTDPNEPERGLDYS 372

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L+R    T  I      L     I  +      L     +K    + +++      
Sbjct: 373 DFAILLRTWSKTAGIVNELEKL----DIPYITAGVNQLFSVNEVKAAYGIFQYLN----- 423

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                       + S +++ ++  Q   +      +        SKF    K +      
Sbjct: 424 -----------KSISAEELLQLWIQIRNSNFASNNLLLGIEYLNSKFPE--KQVDRNGKA 470

Query: 495 AQFCSPHDFFTLILGAKKG-RQQFISRFGNE-VIDVLDEFLNFTLRNEQNSYSS------ 546
               S    +   L   +   + F S+   E V+  L +F       E+  ++S      
Sbjct: 471 IWAFSLQQIYWDFLEKSQINEEAFQSQHIAEIVMYNLGKFSQVINDFEEIYFNSSVPSYH 530

Query: 547 LQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           L   +  +                    N V+IMT+H AKGLE PVVF+          K
Sbjct: 531 LFSFLQFIRYAAADHYPEGWLNNPFRAPNAVQIMTIHQAKGLEFPVVFIPGLNKNYMPAK 590

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            +  +     LN                             ++E+  RL YV +TRA   
Sbjct: 591 KVGGLTEWHFLNPALIKNQQRYIG-----------------SEEDERRLFYVAITRAQKF 633

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L I +  + +N+       +   +                   +            + + 
Sbjct: 634 LFISRAPDENNQLYRKASQFVSELA-----------------ESDAIVTNLPPFEKNLKI 676

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
               ++E +   ++   +        +  +   Y  +                  +Q   
Sbjct: 677 EASPKKEAVSITLNFSVLKDFFECQYRFKLVSMYNFSY---------------PLDQRMG 721

Query: 782 RGLIIH-KLLQVI------FTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLL-LSITRL 831
            G  +H  L+++         L +    +                 ++ K+L+   +   
Sbjct: 722 FGRSLHNTLMEIHKRSKLGEELSQDDVLDIANGQSHFPYLGKSTILEQMKDLVKERVAEY 781

Query: 832 LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS--QQNI--FIFEYKTHH 887
            +      +     Y E  +   +      I+++G+ID I     +      I E+K+  
Sbjct: 782 YK--RNKDSFKNIEYVEQEIQLNL---DNGILVTGKIDLIRRKLYEDKYETTIIEFKS-- 834

Query: 888 HVPQEIEHIPYTHIAQLSIYEK 909
              Q++++   T+  QL++Y  
Sbjct: 835 --KQDVQNQKITY-DQLNLYAL 853


>gi|15894426|ref|NP_347775.1| ATP-dependent DNA helicase, uvrD-like [Clostridium acetobutylicum
           ATCC 824]
 gi|15024062|gb|AAK79115.1|AE007630_5 ATP-dependent DNA helicase, uvrD-like [Clostridium acetobutylicum
           ATCC 824]
 gi|325508555|gb|ADZ20191.1| ATP-dependent DNA helicase, uvrD-like protein [Clostridium
           acetobutylicum EA 2018]
          Length = 609

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/547 (17%), Positives = 175/547 (31%), Gaps = 137/547 (25%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + +   YE  K+K    DFED II   + LKK            ++  +++ DEVQD++
Sbjct: 150 LRAMFKLYENLKEKENCYDFEDWIILALEKLKKHP----------RKWKYVMADEVQDSN 199

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +  E+I+ ++             + L  VGD +Q+IYSF G+ P+  L   +       
Sbjct: 200 DLNIEMIKLIS-------------KNLICVGDVRQAIYSFRGSSPQFFLNFDKEF----- 241

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  I+ L +++RS  +I+   +K             DS    +             
Sbjct: 242 ---NGAKILHLDINYRSKKNIVDKSNKFIKPYFKDYKYYSDSIANFK------------- 285

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                        +  +  + S+ + L +         +I+  I   I            
Sbjct: 286 -------------DNGEIKYFSFVNKLEES-------EKISNLIKEKITKGE-------- 317

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                +I VL R   D+  +  + R  K    I     +         I  +M   R I 
Sbjct: 318 --DPNNIAVLYRLNDDSSYLECVLRRDK----IPYYIENDSSFFKRKEIAGIMGYLRLIQ 371

Query: 430 SQEDDLSF---VCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQHVI 485
           + +DD +F     +   PL   S   +  I      E ++ +E  +K     + + +   
Sbjct: 372 NSKDDGAFLDVWNLRNIPLKYMSGTILSDIRKQSVKENKSYFEIFKKMDFNKMFQIRSRN 431

Query: 486 KYIHELIHIAQFCSPH--DFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLR 538
            +I  +  +              I+      Q             E    +D   +F + 
Sbjct: 432 DFIKSIEKLKHKNKVSIKQLIDDIVKEFNLYQWIKEKYPNKDEQEERKGSIDVLKSFIVN 491

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                   LQ  I  ++     IK+    + + V++M++H +KGLE   VF++      F
Sbjct: 492 ------DDLQFFIDFVQTSNMNIKK---KDKDGVKLMSIHRSKGLEWKSVFVIGIQDTRF 542

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +                                             E  RL YV  TRA
Sbjct: 543 PNARNG---------------------------------------LNEEARLFYVATTRA 563

Query: 659 SDQLIIC 665
            + L + 
Sbjct: 564 IENLYLS 570


>gi|153827736|ref|ZP_01980403.1| ATP-dependent DNA helicase rep [Vibrio cholerae MZO-2]
 gi|149737788|gb|EDM52693.1| ATP-dependent DNA helicase rep [Vibrio cholerae MZO-2]
          Length = 374

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 153/438 (34%), Gaps = 83/438 (18%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+ GA+P+ 
Sbjct: 1   IRYLLVDEYQDTNTSQYELVKLLVGE----------RGRLTVVGDDDQSIYSWRGAKPQN 50

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           ++                  +I+L  ++RST+ IL   + + +   +    +  S     
Sbjct: 51  LVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKALFSELAEG 102

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
            +                                     +   ++    A R+   I   
Sbjct: 103 EKL-----------------------------------KVILANNEDHEAERVTAEI--- 124

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                  ++        +D  +L R    + LI           ++    +         
Sbjct: 125 ------IAHKFLNRTDYRDYAILYRGNHQSRLIEKSL----TQNRVPYKLSGGTSFFARA 174

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN 475
            IKD+MA  R +++ +DD +F+ ++ +P        + K+        ++++    +   
Sbjct: 175 EIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFTASFELGL 234

Query: 476 CGI------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNE 524
                       +   +++  +   A+  +  +    ++   +            +    
Sbjct: 235 EQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSASPKAAEM 294

Query: 525 VIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
            +  + +  ++ + + +          L+E++  L       +   + + + V++MT+H 
Sbjct: 295 RMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHA 354

Query: 580 AKGLESPVVFLVDTGSQV 597
           +KGLE P V+L+     +
Sbjct: 355 SKGLEFPYVYLIGAEEGI 372


>gi|303242289|ref|ZP_07328776.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
 gi|302590199|gb|EFL59960.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
          Length = 706

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/566 (17%), Positives = 175/566 (30%), Gaps = 131/566 (23%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE K+ N  +DF+D++     +L K      I      + + + +DE QD S IQ
Sbjct: 179 IFKAYEEYKRCNLFIDFDDMLTYAYSILVK---CPDILSHYRNKYSFVQVDEGQDLSKIQ 235

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+++ +          ++    LF V D+ QSIY F GAEPK +L  K           
Sbjct: 236 FEILKLIV---------NAQNNNLFIVADDDQSIYGFRGAEPKYILDIKHEF-------- 278

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           +  S+  L  ++RST +I+ +  K     +        +    +     I   G  +   
Sbjct: 279 KGCSVFLLENNYRSTKNIVEISSKFIRENKQRFDKKHKTDNNEKCDPFIIQVQGDRE--- 335

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                                   +  +I    +          
Sbjct: 336 ---------------------------------------QLKYLIEQLQLHVKEC----- 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKDLMALGRFILSQ 431
            + + VL R    + +I        +   IS     ++     H  + D++A   F L+ 
Sbjct: 352 -RSVAVLYRNNLSSVVIADTL----DRRGISFRVKQNKLSYFSHWIVLDVLAFLNFALNP 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D  +F  +        S+  +        E E + + I K       +   + +   E 
Sbjct: 407 HDVEAFSRIYYKMNRYISKTMLENALNGNLE-EQIIDRIIKSDEIKTYQQSRLAELKIEF 465

Query: 492 IHIAQFCSPHDF--FTLILGAKKGRQQFISRFG----------------NEVIDVLDEFL 533
             +A+                    +++    G                 E    + +FL
Sbjct: 466 AKLAKKNPSLALNYIERSFNYIGYVKEYCENTGLSFEYLYRMFGILETIAEGCLTISDFL 525

Query: 534 NFTLR----NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                     E  +  S     S         KR        V + T+H++KGLE  VVF
Sbjct: 526 ERIEELQILFESPAGRSTSLHRSSYNLGEIDYKR-------AVTLTTIHSSKGLEYDVVF 578

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +VD   +     +                             V    K+   S  EE  R
Sbjct: 579 MVDLTEEEIPGVN----------------------------AVESAGKNNDYSALEEERR 610

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKK 675
           L YVG+TRA + L +    + +    
Sbjct: 611 LFYVGITRAKEYLYLISPGSKTARST 636


>gi|320450685|ref|YP_004202781.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
 gi|320150854|gb|ADW22232.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01]
          Length = 621

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/698 (15%), Positives = 216/698 (30%), Gaps = 127/698 (18%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  ++++    +      +    V+ + +       +    + + + T+     
Sbjct: 22  GPGSGKTRTVVHRIARLIRKGVDPETVTAVTFTKKAAGEMRERLVHLVGEETATKVFTAT 81

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM------ 119
           F  L+   L    T +  +  ++  K   ++ E L ++  +      +    ++      
Sbjct: 82  FHSLAYHVLKDTGTVRV-LPAEQARKLIGEILEDL-QAPKKLTAKVAQGAFSRVKNSGGG 139

Query: 120 FKSTLASLTLAKYLNAH----YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
            +  +A  T            YE  K++  +LDF+DL+      L        ++ +   
Sbjct: 140 RRELIALYTDFSPYIERAWDAYEAYKEEKRLLDFDDLLHQAVHELSTDID---LQARWQH 196

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
               +++DE QDT+L+Q+ ++R L           +    L AVGD  Q+IY++ GA+ +
Sbjct: 197 RARFLIVDEYQDTNLVQFNLLRLLL----------TPEENLMAVGDPNQAIYAWRGADFR 246

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +L  K+             ++ +L  ++RS   I+T   KV +     + L   +    
Sbjct: 247 LILEFKKHFPN--------ATVYKLHTNYRSHNGIVTAAKKVITHNTQREDLDLKALRNG 298

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
              +                                    L Q  S    A  +A  +  
Sbjct: 299 DLPT------------------------------------LVQAQSREDEALAVAEVVKR 322

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            +   T            ++I +L+R    +  I    R     Y+I           + 
Sbjct: 323 HLDQGTP----------PEEIAILLRSLAYSRPIEATLR----RYRIPYTIVGGLSFWNR 368

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
             ++  + L +      +  S V +L S +             ++      Y    + A 
Sbjct: 369 KEVQLYLHLLQAAS--GNPESTVEVLASLVPGMGPK-----KARKALETGKYPKEAEEAL 421

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
             +   +       E +  A   + H     +          I     +    L+E ++ 
Sbjct: 422 QLLQDLRAYTGERGEHLASAVQNTLHRHRKTLWPYLLELADGIEEAAWDRWANLEEAVST 481

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                 ++     +L + L             + + V+IMT+H +KGLE  VV L     
Sbjct: 482 LFAFAHHTPEG--DLDTYLADILLQE-EDPEDSGDGVKIMTLHASKGLEFAVVLLPFLVE 538

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             F                                           +T EE  RL YVG+
Sbjct: 539 GAFPS----------------------------------WRSAQNPATLEEERRLFYVGL 564

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
           TRA +   +  H        S  R   +   +  H + 
Sbjct: 565 TRAKEHAYLSYHLVGERGATSPSRFARETPANLIHYNP 602


>gi|227497414|ref|ZP_03927646.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833090|gb|EEH65473.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
          Length = 1152

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 131/1096 (11%), Positives = 279/1096 (25%), Gaps = 227/1096 (20%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            ++  GL    +          +       I      ++ T           + +  +   
Sbjct: 109  RDEEGLDP--TIATYNSFAGTIVRDHGLRIGVDPDATLITEARAWQ-VVSAIVERRRQPL 165

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
              E  + ++   L       +N++      ++ +   +L    +    +R      K F 
Sbjct: 166  PLESPARVTELVLALDGALCENLLE---VDQAREQLGELDSFFESLATVRGLKTAVKGFD 222

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            + + +      L   Y + K+   +L F D I     ++     S  +   + ++   +L
Sbjct: 223  TAMKTRLALLDLVQEYRDVKRSQGMLTFGDQIALAYRVVSAPG-SQEVVAALREQYRGVL 281

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDTS  Q  ++  L  D             + AVGD  Q+IY + GA    +    
Sbjct: 282  LDEFQDTSTAQVRLLARLFADSG-----------VTAVGDPNQAIYGWRGASAAALDEFH 330

Query: 242  RINQ-------KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
            R           R  +      ++ L  ++R+ + +L   + + +   +      D+   
Sbjct: 331  RAFNPAGCQAVHRGADPLTTIPVLPLSTAWRNDSRVLEAANALSAPLRHHTPAPGDAPAP 390

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                         V+       Q          ++ +              A  +A  ++
Sbjct: 391  RV----------PVEQLHARPRQAGLAEGAVLGAYLADP---------LQEAEVVASFLA 431

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +             R      + VL R R     +    R       +         +  
Sbjct: 432  D-------------RWNPQAQLAVLSRTRDSLLPVAEALRA----RSLPYEIVGIGGMLT 474

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---------------- 458
               + D+ AL     + E     V +L          D+  +                  
Sbjct: 475  IPEVADVRALLTVAANPERGDWLVRLLT--AGGIGAADLAALYAHARRQMRGTSPFQPPA 532

Query: 459  ---------------------------------QRHETETVYEYIQKFANCGISKFQHVI 485
                                                  + +        +   ++    +
Sbjct: 533  DKSSQGASSVAQIPDAEPDSPMLAEAIEAVARSADRHPDGLAGVRVPGLSPAATRLADRL 592

Query: 486  KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRNEQN-S 543
                  +  A      D  TL         +  +R  +      LD       +  ++  
Sbjct: 593  ARQLRRVRRAMRLPLADLVTLAEQCLDLDIEVAARVDDRIGRRGLDGLREVAEQFTRDLD 652

Query: 544  YSSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +SL   +  L+      +             V++MT+H +KGLE   V ++    + F 
Sbjct: 653  SASLPSFLEWLDAAEAHERALSAPEVEPEPGAVQLMTIHASKGLEWDHVAVIGMNEKGFP 712

Query: 600  ----------------HKHIKKMHIMPSLNDDPGIPIWIP--------QSKSRNNIVSDL 635
                                      P   D   +P +                +++   
Sbjct: 713  LYSTQPREDLSVRSKSWMGSADEFPHPLRMDAATLPPFTLGVLEPPEVDKDEVKDLLDQY 772

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
               L +    E  RL YV +TRA   +++     + +       + +          +  
Sbjct: 773  CLALGRYGVSEERRLAYVALTRARHDVLLTGSHLSKSSTTPRPMSRFLAELRRRDLVQPY 832

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL---------------------- 733
                +         +    +       P   +E   +                       
Sbjct: 833  GPGWVDFDPEHGNGLVTRRARVLWPVQPGAADEAEDRDGVALARQQAAEEVAQACQDASV 892

Query: 734  ----MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                  E     +  +P      EP  L     +       E     +      L  H  
Sbjct: 893  RLRHESEHSEGDQQAAPEAEVDGEPSTLVARWCEEARVLLAEREQEASAPRQLHLPAHLA 952

Query: 790  LQVIFTLPEHKRKNFIT------------------------SYCTKNAKLWPAKEY---- 821
               +  L     +  +                            + ++ L+  +E     
Sbjct: 953  ATQLDALRTDPEELALHLRRPLPSRPSASARLGTVFHDSVTQRLSPHSALFSLEEAGVPD 1012

Query: 822  ---KNLLLSITRLLENPMMTTAMSCDSY--SEVSVSGKINCPKKDIIISGRIDQISISQQ 876
                    ++ R L        +       +EV     I+     + +  RID +   + 
Sbjct: 1013 TVSAQDRQTLERWLATAQDLDLLQGYLLHDTEVEREMTIS----GVTLRCRIDAVFRREG 1068

Query: 877  N-------IFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIY 926
            +         I ++KT   HVP +          QLS+Y  +   S   P +++     Y
Sbjct: 1069 SGEDEPAAWLIVDWKTGRHHVPVD----------QLSVYVHVWAASLGIPAEAVRAAYAY 1118

Query: 927  VS--EPKVFIIPQNKL 940
            V     KV  +   +L
Sbjct: 1119 VDYPGGKVDELSGQEL 1134


>gi|209965327|ref|YP_002298242.1| UvrD [Rhodospirillum centenum SW]
 gi|209958793|gb|ACI99429.1| UvrD [Rhodospirillum centenum SW]
          Length = 1178

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/485 (16%), Positives = 141/485 (29%), Gaps = 107/485 (22%)

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            SIY + GAE   +LR                 +I L  ++RSTA IL     + +  +  
Sbjct: 676  SIYGWRGAEVGNILRFDHDF--------TGARVIRLEQNYRSTAHILGAAHGIIANNQGR 727

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
             G                      QLW             ++      +D+  +      
Sbjct: 728  LGK---------------------QLW-------TEVDGGEKVRVRGLWDAEEE------ 753

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             AR +   I  +              +    + VLVR    T         L     +  
Sbjct: 754  -ARWVGDEIEALQRKG----------LSLGQMAVLVRAGFQTREFEERFITL----GLPY 798

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHET 463
                     +   I+D +A  R +   +DDL+F  ++  P     +  + ++    R   
Sbjct: 799  RVIGGPRFYERQEIRDALAYLRIVAQPDDDLAFERIINVPKRGIGDATLRQLYVAARTLG 858

Query: 464  ETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
             ++ E   +       +       + +++ I             D    IL      + +
Sbjct: 859  VSLAEATWRLTETDELRGKVRSTLRALMEDIARWRGQIDRTPHTDLAQAILDESGYTRMW 918

Query: 518  ISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
                  E    ++ L E +N     E         L   LE     +  A ++   +V +
Sbjct: 919  QQDKSPEAPGRLENLKELINAMGEFEN--------LTGFLEHVALVMDNAEASGLEQVSL 970

Query: 575  MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            MT+H AKGLE  VVFL      +F  +     + +                         
Sbjct: 971  MTLHGAKGLEFDVVFLPGWEEGLFPSQRTLDENGI------------------------- 1005

Query: 635  LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                   +  EE  RL YVG+TR   ++ +   +N               V +       
Sbjct: 1006 -------AGLEEERRLAYVGITRGRIRVHVSHAANRRIHGSWATSLPSRFVDELPAEHVE 1058

Query: 695  VKKIK 699
            V+   
Sbjct: 1059 VENAP 1063



 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 31/220 (14%)

Query: 8   SLNESYELIYKDLW-PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  E  E +   +  P   + +   +   +  +               +    +      
Sbjct: 98  AAREMRERVEALVGVPTEGWWMGTFHALAARILRRHA-----------ELVGLKPSFTIL 146

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                  L ++    +NI +++   +   L   +++ +D+ +   DR             
Sbjct: 147 DTDDQIRLLKQLMEAENIDSKKWPARV--LLGAIERWKDKALT-PDRLKREDAGDMAGGR 203

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L     L   Y++        DF DL+++   L +K +    +  +      +IL+DE Q
Sbjct: 204 LI---DLYRQYQDRLLSLNACDFGDLLLHNIALFQKHND---VLREYQDRFRYILVDEYQ 257

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           DT++ Q+  +R L +          + R +  VGD+ Q +
Sbjct: 258 DTNVAQYLWLRLLAQ----------AHRNICCVGDDDQCL 287


>gi|148258686|ref|YP_001243271.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1]
 gi|146410859|gb|ABQ39365.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1]
          Length = 686

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 105/675 (15%), Positives = 202/675 (29%), Gaps = 139/675 (20%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--QQASQTQ 60
            R    ++   E I + +       ++    +       G   +   A+ +         
Sbjct: 71  RRAAAEMSRRVERIARKVLGGQAEAITAGLTWAGTFHGLGARMLRDYAERIGIDAVFTIH 130

Query: 61  CIEERFSLLSSFFLTQKFT-PQKNIITQ----EINKKSPDLKEKLKKSQDEFIKIRDRFN 115
             E+   L++     +  +  Q+   T+     I  +  +    L ++          + 
Sbjct: 131 DREDSADLMNLVRHERGLSNTQRRFPTKGTCLAIYSRCVNADMTLDEALVRHFPWCTEWA 190

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                          K L A Y EAK+ N VLD++DL++    ++    ++  I     +
Sbjct: 191 AE------------LKGLFAAYVEAKQANAVLDYDDLLLYWAQMMADETIAREI----GE 234

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             +H+L+DE QDT+ +Q +++                   L  VGD+ QSIY+F  A  +
Sbjct: 235 RFDHVLVDEYQDTNRLQSQIL----------LGLKPDGVGLTVVGDDAQSIYAFRAATVR 284

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +L        RA        I+ L  ++RST  IL+  + V  +       +  +  T 
Sbjct: 285 NILEFPDQFSPRAD-------IVTLDRNYRSTQPILSAANAVIGLARERFTKNLWTDRTA 337

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             +                                     L      +  AR I   +  
Sbjct: 338 SRKP-----------------------------------QLVSVRDEADQARYIVEQVLA 362

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                 +           K   VL R    +  +            I  V        D 
Sbjct: 363 KREEGIVL----------KQQAVLFRTSSHSGPLEVEL----TRRNIPFVKFGGLKFLDA 408

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
             +KD++A  RFI +  D ++   +L   +         ++     +       +     
Sbjct: 409 AHVKDMLACLRFIENPRDRIAGFRVLH-LIPGIGPASAQRLLDAAGDNVDPIGALCAQPA 467

Query: 476 CGI--SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                  +   I+ + +L        P D    +    +   + +          L +  
Sbjct: 468 PARAGEDWTAFIRTLEQLR---ISDWPAD-IERVRHWYQPHLERVHEDAEMRSADLLQLE 523

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVF 589
                   + Y S +  ++EL   PP      +     + + + + T+H+AKG+E   V 
Sbjct: 524 QIA-----SGYPSRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGMEWNSVH 578

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +++                                           +     +  EE  R
Sbjct: 579 VLNVVDGCMPSD----------------------------------LGAGSSAELEEERR 604

Query: 650 LLYVGMTRASDQLII 664
           LLYV MTRA D L +
Sbjct: 605 LLYVAMTRAKDDLHL 619


>gi|330469985|ref|YP_004407728.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328812956|gb|AEB47128.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 1190

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 130/1003 (12%), Positives = 275/1003 (27%), Gaps = 208/1003 (20%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQA--SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89
                S  + TG    L   + L                 L     T+ F           
Sbjct: 178  RGEPSPRLLTGPEQDLIIRELLDVVGEESGDDPVGWPEDLRPALRTRAFAA--------- 228

Query: 90   NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC---- 145
                  L++ L ++ +  +   +     +      A    A      Y            
Sbjct: 229  -----QLRDLLMRAAERGVGPVELARLGEKLGR--ADWPAAARFLREYVAVLALRDVANR 281

Query: 146  ---VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
                 D  +L+     +L+       +     + + ++ +DE+ DT   Q +++ ++   
Sbjct: 282  GSVAYDPAELVRAATGMLRDDPELLAV---ERRRLAYVYVDELADTDPAQRDLLETVAG- 337

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        TL A  D   S Y+F GA+P  V       +   T +G   + + L  
Sbjct: 338  ---------GGLTLVAFADPDSSTYAFRGADPTGVTTFPHRFR---TASGAPAAQVLLTT 385

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            S+R    +L    ++                  R R       G++++            
Sbjct: 386  SYRCGERLLAASARLARRLRG-------PAAHRRMRPVPGTPPGSMEIHTFR-------- 430

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                              SA+  A  +A+ +                 +    + VLVR 
Sbjct: 431  ------------------SATSEAAWLAHALREAHLLG---------GLPWARMAVLVRS 463

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE--DDLSFVCM 440
                  +  L R L      +VV  +   L    A+  L+ L R  L  +  D+ + V +
Sbjct: 464  T--GRQLPTLRRALHAAGVPTVVHGEDLPLHLQPAVAPLLLLLRCALEPDRLDEEAAVAL 521

Query: 441  LKSPLFNFSEDDIFKICT-----------QRHETETVYEYIQKFA------NCGISKFQH 483
            L SPL         ++             +R   E + E ++  A             Q 
Sbjct: 522  LHSPLGGADPLAERRLRQGLRALALAAGDRRPSGELIVEALRDPAELAGVERRWAEPAQT 581

Query: 484  VIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFISRFGN------------------ 523
            V   +      A     +  D    +  A    + + +                      
Sbjct: 582  VAGLLAVARETAARPGATAEDVLWAVWRASGLAELWSAALTRGPSVAGEGDLARRRRAEA 641

Query: 524  --EVIDVLDEFLNFTLRN-EQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVH 578
                +D +    +   R  ++   +  +  +  +  ++ P       +   + VR++T H
Sbjct: 642  ADRDLDAVMVLFDAAARFTDRLPGARTEVFLDHVLGQELPADTLAPTADRGDAVRLLTAH 701

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             AKGLE  +V +      V+    ++   +           + +   ++        +  
Sbjct: 702  AAKGLEWDLVAVAGVQEGVWPDLRLRGSLL------GSERLVDVLAGRADGAGTVATLVG 755

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHS----NTSNEKKSNQRTWYDMVYDSFHNDER 694
               +  +E  RL +V +TRA  +L++   +       +  +   R  Y++       DE 
Sbjct: 756  QTSALLDEERRLFHVAVTRARRRLLVSAVASASVGGDDHDEQPSRFLYELGPGDTPTDEA 815

Query: 695  VKKIKLTNSIN-------------------------------------KDEWIAYEWSTH 717
                     +                                               +  
Sbjct: 816  PTASGDPEPLPAGIETSGTEPPGSETSTSEAGGSRTLPVSRPPRALTLPALVAELRTALV 875

Query: 718  HPENTPLEREETIKQLM-------------DEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
             P      R+    +L              D   +          D  EP  + PS +++
Sbjct: 876  DPAAPLARRQAAAAELARLGAAGVSGAHPDDWWGLRPLSDDRPLVDEGEPVRVTPSGMES 935

Query: 765  KGKTNLESLLSDN-------QTFNRGLIIHKLLQVIFTLPEHKRKNFIT------SYCTK 811
              + +L  LL  +            G ++H    ++       R   +            
Sbjct: 936  ALRCSLRWLLERHGGSTPASAAQGVGNLVHAA-AMLAEDARADRSALLEYVAARFDAIEL 994

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
             A+     E       + +LL    +          E   + +++ P + + + GR+D++
Sbjct: 995  AARWMVGPERARAEAMVDKLLR--WLAANPRRLLAIEHEFAVRLDDPHRPVDLVGRVDRL 1052

Query: 872  SIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             +     + + + KT          +      QL  Y+  ++ 
Sbjct: 1053 EVDEDGRLVVIDLKTGKSTTVTEREVVEH--PQLGAYQAAVEA 1093


>gi|323697750|ref|ZP_08109662.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323457682|gb|EGB13547.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 718

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 86/576 (14%), Positives = 163/576 (28%), Gaps = 118/576 (20%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R ++     +I++DE QDT+L+Q  +++ L                + AVGD+ QSI
Sbjct: 209 EPLRNQLQARYRYIMVDEYQDTNLVQARIVQQLAG----------PRGNVMAVGDDAQSI 258

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+F GA    +L+  +I +           +I L  ++RS   IL + +++         
Sbjct: 259 YAFRGANVANILKFPKIFE--------GTKLIRLEKNYRSVQPILDLTNEILKGATTKFD 310

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               S     H                                      +    S    A
Sbjct: 311 KHLYSDLKSDHLP-----------------------------------QVIHPLSDQTQA 335

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R +   I  +            R     D+ VL R    +  +            I    
Sbjct: 336 RLVVDQILEL-----------GRKHMLHDVAVLFRASYQSFPLEVAL----TRIGIDYQK 380

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  +   +KD++A  R +++  D +++   ++  +       + KI    H  +  
Sbjct: 381 FGGIRFHEAAHVKDVLAFIRLVINPHDLMAWQRAME-HIKGVGAKTVAKIYQAMHSGD-- 437

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEV 525
            E           + + ++  +  L   A    P      +L   +    +       + 
Sbjct: 438 -EKYMAKMVKKHEQLRELLAELDRLR--AGEKRPSAVLEAVLAFYQPILIEKYPDDYPKR 494

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              L++               + + I +L               N V + TVH+AKGLE 
Sbjct: 495 QAGLEQLSQIAAGY-----KDMDQFIGDLSLDGD--PDDEQRKENAVVLSTVHSAKGLEW 547

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V ++D     F  +                                      +    E
Sbjct: 548 AAVIIIDLVEDRFPSR----------------------------------KAMQRAEDLE 573

Query: 646 EYNRLLYVGMTRASD--QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           E  RL+YV  TRA +  +L +           S+       V +                
Sbjct: 574 EERRLMYVACTRAKEELRLFVPGSVYNRASGLSDPTLPSPFVMELPDTVFERLNESYGGG 633

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
           +      AY      P       E   + + +  + 
Sbjct: 634 LETRRRPAYSLPDPVPPVYESRDEADARDVPEPARP 669


>gi|80159869|ref|YP_398613.1| putative ATP-dependent DNA helicase [Clostridium phage c-st]
 gi|78675459|dbj|BAE47881.1| putative ATP-dependent DNA helicase [Clostridium phage c-st]
          Length = 592

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 90/546 (16%), Positives = 172/546 (31%), Gaps = 127/546 (23%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            +     YE+ K K  + D +D +++   LL  +      + K D    ++L+DE QD +
Sbjct: 150 LRNYFKQYEDFKIKKNLKDSDDQLLDCYYLLHNK------KNKYDHTFKYVLVDESQDNN 203

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L+Q  ++                   +F +GD +Q IYSF G++P   +   +       
Sbjct: 204 LVQNLLLHEWC-----------KSGNIFCIGDFRQCIYSFRGSKPDMFMNFDKEW----- 247

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 +II L  ++RS  DI+   +              +S      ++          
Sbjct: 248 ---NDATIINLDTNYRSCQDIVNKANNFVRRYYGNYRYYSNSKAYNNSKAH--------- 295

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                             ++    D   +          +   I  ++            
Sbjct: 296 --------------IDINTYMHQQDESNE----------VVNKIQKLLQEGE-------- 323

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  +I VL R    +  +    R      KI    ++         I+ +M+  R I 
Sbjct: 324 --KPNEIAVLYRLNSHSHHVEGELR----RRKIPYYISNNSSFFKRKEIEGVMSYLRLID 377

Query: 430 SQEDDLSFVCML---KSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISKFQH-- 483
           +  D+ +F  +      P+  FS   +  I         ++YE    F      + ++  
Sbjct: 378 NPYDNSAFENIFKFRNYPIQFFSNKLLQDIKSFAGRNNLSLYEAFTLFKYKENWQEKNMK 437

Query: 484 -VIKYIHELI-HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF--LNFTLRN 539
                I +L     +          +       +++I    +   D  D    +      
Sbjct: 438 IFENNIEKLRLQKDKNIDICKLIDNV-KLAFNIEEYIECKYSNREDQEDRLNSIETLKSF 496

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            + +  +LQ  I+         K+    N + V++MT+H++KGLE   VF++      F 
Sbjct: 497 VKGN--NLQGFINYAYNSSNKKKQD---NKDCVKLMTIHSSKGLEFKHVFIIGIEDGKFP 551

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H                                       KKS   +  RL YVG+TR  
Sbjct: 552 H---------------------------------------KKSEIIDEARLFYVGVTRPK 572

Query: 660 DQLIIC 665
           + L + 
Sbjct: 573 ENLYLS 578


>gi|76789378|ref|YP_328464.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis A/HAR-13]
 gi|76167908|gb|AAX50916.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis A/HAR-13]
          Length = 1026

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 139/958 (14%), Positives = 276/958 (28%), Gaps = 182/958 (18%)

Query: 5    FGLSL-NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
              LS  + + + +   +    +     + +  + S+     + L   + L    Q     
Sbjct: 205  LALSPLSITLQKLKAWVSRYQHLAPLSLEEMQAFSLRF-KQSDLSIERELPAFVQQFETN 263

Query: 64   ERFSLLSSFFLTQ--KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                 L   F     +   ++N   ++++  +  L    +               +   +
Sbjct: 264  PY--SLDMLFFPGMVQKFQEENRNKKKLSAPASPLDPFFQDWIQ---------LAHPFCQ 312

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                  TL K +  H +    ++     ++ I     LL   D    +  ++ ++   +L
Sbjct: 313  KEPIFHTLLKSVQQHLKTHCAQS--YSHDESIATLESLLAHNDT---VVSQLRKQFQLVL 367

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   QW++   L         +     +LF +GD KQSIY +  A+    L+ K
Sbjct: 368  IDEFQDTDKRQWQIFSKLFA-------SPDYSGSLFLIGDPKQSIYEWRNADLPTYLQAK 420

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                K A         + L  ++RST +++  ++ +FS+P       ++      H    
Sbjct: 421  HSFPKEAQ--------LILDTNYRSTPELMQALNHLFSLPTPFLETPQNILYHPLH---- 468

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G+ ++     S            + S  D   +    S  A  +            
Sbjct: 469  --SKGSAEISYSEFS---------PIHFFSSEDIQEETLWISKTASYLRS---------- 507

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA-IKD 420
                     I   ++ VLV+              L     I +       + D       
Sbjct: 508  ------AYSIPFGNMAVLVQDYPQALK-------LITHSTIPMAYCKEKRIFDRTESPYL 554

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+ L   +L  E+      +L S LF  S  +   I        +++  + +      S 
Sbjct: 555  LILLLEALLYPENQQKIQAILMSRLFQLSSTE---IHQHLKTFSSLFFTLNRHLYHY-SL 610

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                 K +                  +L    G     +  G+ +   L+    +  +  
Sbjct: 611  LATFYKLLG---------------ENVLSQTIGETLLQTPLGDIIFQELEALCLYLDKTT 655

Query: 541  QNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            +N +  L  LI+ L            + S + N ++I TVH++KGLE  VVF        
Sbjct: 656  ENPHHKLLHLINILITGKYDEELSFSSQSNDENMIKITTVHSSKGLEYDVVFCSCLNK-- 713

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                                                      K+ T   + R +YV  TR
Sbjct: 714  -----------------------------------------AKEKTPSVHMREMYVACTR 732

Query: 658  ASDQLII---CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            A   L I        + + KK +    Y  V         V+ +  ++            
Sbjct: 733  AKKFLFIPFSPIEKRSLSTKKLSALANYANVTKHHSVPHLVETLTSSSPELFSSSFQPPE 792

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI--NEPYILNPSTIDTKGKTNLES 772
            S+  P+   L ++          +      S ++N         L+PS +          
Sbjct: 793  SSLTPDRERLPQQTYFSLPHLPSRTIHSFSSTVENLHFSEPIQELSPSLL---------- 842

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                      G +IHKLL+ +        +       T             +   I  + 
Sbjct: 843  ---FPGGSLTGTLIHKLLESLAGNFAACFEEIFNKAQTLLKNTPLEGYESIIAEKICTVF 899

Query: 833  ENPM--------MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
               +        +      +  +E          ++  +  G +D     +   FI ++K
Sbjct: 900  STTLPFSSGSFALRNVHPHNIRAE----ETFLLQEEGELWQGIVDLFFEHKDRFFIIDWK 955

Query: 885  THHHVPQE----IEHI-----PYTHIAQLSIYEKI----LKDSYPNKSLVCLLIYVSE 929
            T     +      + +           Q  +Y K     L        +    +++  
Sbjct: 956  TSFLGDETSCYSPDQLHLYIQRQGLDRQERLYRKAAKRFLHQFNSLLQVEMAFVFIRG 1013


>gi|27380604|ref|NP_772133.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
 gi|27353769|dbj|BAC50758.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110]
          Length = 685

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/731 (15%), Positives = 224/731 (30%), Gaps = 126/731 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQ-VSDINKYVSLSMETGNPTILKKAQTL--QQASQT 59
            R    +    E I + +        + D   +       G   + + A+ +    A   
Sbjct: 68  RRAAAEMAGRVERIARKVLGENNAAIMRDALTWAGTFHGIGARLLREYAERIGVDPAFTI 127

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
              E+   L++     +  +  ++    +       +  +   ++ E  K+  +   + +
Sbjct: 128 HDREDSADLMNLVRHERGLSKTESRFPAKG--TCLSIYSRCVNAEMEIEKVLGQHYPWCV 185

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                      K L   Y EAK+   VLD++DL++  + ++      A I  +I    +H
Sbjct: 186 -----GWAAELKGLFVAYVEAKQAQHVLDYDDLLLYWSQMMSD----ALIAEEIGGRFDH 236

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF  A  + +L 
Sbjct: 237 VLVDEYQDTNRLQSSILLAL----------KPDGRGLTVVGDDAQSIYSFRAATVRNILE 286

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +           +  +I L  ++RST  +L   + V  +       +  +  T   + 
Sbjct: 287 FPQSFS-------PRAEMITLDRNYRSTQAVLAAANGVIGLARERFTKNLWTDRTSAQKP 339

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                               L      +  AR I   +      
Sbjct: 340 -----------------------------------QLVTVHDEADQARYIVEEVLANREQ 364

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             +  +            VL R    +  +            I  V        D   +K
Sbjct: 365 GALLKHQ----------AVLFRTSSHSGPLEIEL----TRRNIPFVKFGGLKFLDAAHVK 410

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           D++A+ RF  +  D ++   +L   L         ++  Q  E+      + +      +
Sbjct: 411 DVLAMLRFAENPRDRVAGFRILH-LLPGIGPATAQRVLDQMAESADPLAALGQLPVPPRT 469

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
                  ++    ++     P D   + L  +    +            L +        
Sbjct: 470 G-ADWTDFVRTTQNLRYSEWPADLERVRLWYEPHLDRIHEE-SETRRADLMQLEQIA--- 524

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             + Y+S ++ ++EL   PP      S     + + + + T+H+AKG E   VF+++   
Sbjct: 525 --SGYASREKFLTELTLDPPDATSDKSGPPLRDEDYLILSTIHSAKGQEWKSVFVLNVVD 582

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                                                   +     +  EE  RLLYV M
Sbjct: 583 GCMPSD----------------------------------LGAGTSAELEEERRLLYVAM 608

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA D L +          ++ +   +     +    E++  +    +  K        +
Sbjct: 609 TRAKDDLHLIVPQRFFTHGQAAKGDRHVYASRTRFIPEQLVYLFERTAWPKAAAGGARNA 668

Query: 716 THHPENTPLER 726
              P+     R
Sbjct: 669 AQGPKIDIGAR 679


>gi|284032499|ref|YP_003382430.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283811792|gb|ADB33631.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 1239

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 99/640 (15%), Positives = 192/640 (30%), Gaps = 77/640 (12%)

Query: 342  ASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                A  +A  IS  +       + K    R   A DI +LV  R   P +        +
Sbjct: 615  REREAADVATVISQALDEGWTVYDEKTSTWRPAGAGDIAILVPARTSLPFLEDAL----D 670

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
               I        ++     ++DL+A  R +    D L+ V  L+SPLF   +DD+F    
Sbjct: 671  RADIPYRAEASSLVYQTAEVRDLLACARALGDPSDQLALVTALRSPLFGCGDDDLFTW-- 728

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-GAKKGRQQF 517
             +    +         +         ++++    + +++ SP +    I+   +      
Sbjct: 729  -KRSGASFTLTAPVPDSLLAHPVGEAMEWLRRTYYASRWLSPSEVLAKIVADRRMLEVAA 787

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT-----IKRAHSANHNEV 572
                  +    +   ++      +  +  L+  ++                    + + V
Sbjct: 788  TGPRARDAWRRVRFVVDQARAWSEVEHGGLRSYLAWAAHQGEEASRVAEAVLPETDADAV 847

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            R+MT+H AKGLE P+V L    +     + ++ +          G      ++  +    
Sbjct: 848  RVMTIHAAKGLEFPIVILSGMTASPNRQRGVQVLWPP------DGGYAVKLKASIQTEDF 901

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR---TWYDMVYDSF 689
              +    ++  + E  RLLYV  TRA D L++  H + +    SN     +   +     
Sbjct: 902  DLVQPVDEQMDEYERRRLLYVAATRARDHLVVSLHRSGTRRHSSNAELLTSANALDVPHI 961

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ------------ 737
            H         LT                H    P+    +     D              
Sbjct: 962  HRLATPSTSALTADPASASRPEAGVPGEHFSLAPVASAASPDDNNDSPSGQKQALTTRTR 1021

Query: 738  -----------KIPKKLFSPIKNDINEPYILNPSTID-----------------TKGKTN 769
                          +      +         +PS ++                      +
Sbjct: 1022 RALEVAPPLNRAEWQTRIEQARASSRRKSSHSPSGLEGTGPDVALHEADPGTAKAARDID 1081

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
            L            G  +H +LQV+           + + C     +  A   + L+ S  
Sbjct: 1082 LPPWSKGRYGTAIGRAVHGVLQVVDLTTGAGLDAAVAAQCLAEGVVEYADVVRALVRSA- 1140

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHH 888
              L + ++  A + D + E  V           ++ G ID +       + I +YKT   
Sbjct: 1141 --LSSEIVQRAATRDHWRESYVGIP---QPDGTVLEGFIDLLYREDDGTLMIVDYKTDAI 1195

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
                +      +  QL  Y        P KS    L+++S
Sbjct: 1196 PAAALHARIAHYTPQLQAY----TTMLPTKS-RATLLFLS 1230



 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 97/256 (37%), Gaps = 25/256 (9%)

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
           P + +        +     E + ++L S    +     +     +I +   D  E ++ +
Sbjct: 225 PKVQRIRDLGVMLAAATDAETQLAVLHSVRALKVGKIGRKENWPDIARMRGDCSEVVEVA 284

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                 + D    +           LA+ +     E ++ +  L+F DL++   DLL++ 
Sbjct: 285 GSLVELLLDACLRHLS-------HWLAERVLES-AERRRADGRLEFHDLLVLARDLLRRE 336

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL----TEDFFVGKNTHSSPRTLFAV 219
                +R  + Q    +L+DE QDT  IQ E+   +      D    ++      +LF V
Sbjct: 337 PS---VRSALQQRYQRLLLDEFQDTDPIQIELAVRIAGGAAADAEDWRDVEVPDGSLFVV 393

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD KQSIY F  A     L  + +              + L  +FR+   +LT ++ VFS
Sbjct: 394 GDPKQSIYRFRRANIATYLTAQSLL----------GETVTLTTNFRTVTPVLTWINTVFS 443

Query: 280 IPENAQGLSEDSTTTI 295
                   ++ +   +
Sbjct: 444 TLITPAEDAQPTYHPL 459


>gi|123446867|ref|XP_001312180.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3]
 gi|121894018|gb|EAX99250.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3]
          Length = 727

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 92/605 (15%), Positives = 172/605 (28%), Gaps = 136/605 (22%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
               + K +       +++   YE+   K  ++DF D +  T +LL K      + YK  
Sbjct: 161 RAKMLGKKSQDLFGDFQFILKFYEDTLHKRRLIDFTDFMTYTQELLLKH---QRVAYKYR 217

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           +   +ILIDE QDTS I + +++ + +            R +  VGD  QSIYSF GA P
Sbjct: 218 KLYQYILIDEFQDTSDINFAILKLILQQSMT---RQPPNRRVTIVGDPHQSIYSFRGANP 274

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             + +   +              + L  ++RS   I+     +                 
Sbjct: 275 DNIKQFLEMFP--------DAGHVTLSKNYRSCESIVKASQSIIKF-------------- 312

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                         +L   +              + S  D+  +       A  I   I 
Sbjct: 313 ---------DGNETELISMI-------PGGNPIKFISASDAYAE-------ADSICTEIE 349

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            M+   +         IQ +DI ++ R       +            I            
Sbjct: 350 RMVYPGS--------SIQYRDICIMFR----MKKVASELEMELFRRNIPYSNKRGLSFFM 397

Query: 415 HLAIKDLMALGRFILSQEDDLSFVC---------MLKSPLFNFSEDDIFKICTQRHETET 465
              ++++++  R +L+   + +            +L  P          ++ ++  + + 
Sbjct: 398 RSEVREIVSYARLLLNFGSEENDTNQLLSSSFEMVLNVPDRQLRACIAPQVTSEASKNKV 457

Query: 466 VYEYIQKF----------ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                 +               I K     + I +L       +       +L       
Sbjct: 458 NVLKYLELLINSKIKSDFPKATIKKLAEFYQIIGKLNRQICQINTSLSTDTVLETIIEIT 517

Query: 516 QF--ISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQELIS-----ELEQYPPTIKRAHSA 567
           +   +     E   + LDEF         +   + Q L+       +           S+
Sbjct: 518 KLCNLDENSEEKNSEDLDEFSEAVQDMINDRNETFQLLLEESKRFHIRLLAANEGTPLSS 577

Query: 568 N-------------------HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                                N V + T+H  KGLESPV F++     +           
Sbjct: 578 QKCLQKFIDSITLETTSSNMKNAVTLSTIHQMKGLESPVCFIMRFNQSILPMADK----D 633

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                             +  E  R+LYV MTRA  +L +    
Sbjct: 634 SDDSGLGDQSV-----------------------SLNEERRILYVAMTRARQKLFLTCAL 670

Query: 669 NTSNE 673
           +   +
Sbjct: 671 SVRGK 675


>gi|19704484|ref|NP_604046.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
 gi|19714756|gb|AAL95345.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
          Length = 1056

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 130/864 (15%), Positives = 275/864 (31%), Gaps = 137/864 (15%)

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            N + +  + +  +     +    E   +        +         L+  +   Y+  K 
Sbjct: 305  NKLKKASDAEHKEYINSRQDELKEI--LSKEIFNEVLIPYEEKIFELSSEIYNLYDSFKI 362

Query: 143  KNCVLDFEDLIINTN-------DLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWE 194
            ++    F D+ I T        + L+  +    I ++ +D  I  I IDE QDTS++QW+
Sbjct: 363  RDKKFTFSDIAIYTYMAIFNKNNALRNENGLTDIFFETLDMNIEAIFIDEFQDTSILQWK 422

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++   T+            +T+  VGDEKQSIY +   E +     + I           
Sbjct: 423  ILYEFTK----------KTKTVICVGDEKQSIYGWRDGEKRLFENLEAIL---------D 463

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                 L  S+RS  +I++  ++ F   E                         ++ W+  
Sbjct: 464  AKKDSLGKSYRSDRNIVSYCNQFFKAIEK------------------------IEDWKFP 499

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
             S+ +S+ +   ++          E                 +  +T+     K      
Sbjct: 500  TSEVNSKNDGYVKAICIKNLQDKIEDEEQ----------KKELNINTVLLQELKNFEPYD 549

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            ++ ++ R   +   I  L    K    I  + N+   ++++  I +   L ++++  E++
Sbjct: 550  NVAIIARTNAELSEIANLLEDEK----IPYILNNEKNISEYSGIFECFELLKYLV-YENE 604

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETV--YEYIQKFANCGISKFQHVIKYIHELI 492
            L+    + SPL NF  ++I  +   + E  +   +     F N    K    ++ I  L 
Sbjct: 605  LALFNFISSPLSNFGTNEIEILLKNKKEVFSYINFSQDNNFINSLDKKIIRFLEKIVFLK 664

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
               +  +  D    I+   +    F      +    + +F   T          L+ L  
Sbjct: 665  KNYKKFTVQDLIFEIIKKFQFIDYFNKDNEVK---NIYDFYLLTNYYSSI----LELLND 717

Query: 553  ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
               +         ++    V ++T+H +KGLE    F++    +  +        +    
Sbjct: 718  Y--KENKLSLSDTNSETKGVELVTIHKSKGLEFKTTFVIKNSKKSKTDDIDFLFEMNDKY 775

Query: 613  NDDPGIPIWIPQ-SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            +                     + I++  K  +EE     YV +TR  + LI+       
Sbjct: 776  DKTVFSLFCKKGYKPILKTCFEERIENYDKKIKEEEINNFYVALTRPKNNLIVI------ 829

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
                     + D +++    +E          + K      +  T       LE +    
Sbjct: 830  ---------YEDRLFEENPLNESNIDDFFNCELGKISLDEKKSKTEDIIEKNLENDLYNS 880

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
            Q      I +        ++NE   L                L   +    G+++H   +
Sbjct: 881  QSYFSSSIYENEEEIKNIEVNESKFL----------------LETEEKRMIGILVHYFFE 924

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSCDSYSEV 849
             +    E + +   T    K    +  ++   +    +I   L         S   +  +
Sbjct: 925  NLKYGTEEEVEFSKTLCYKKYLSYFGEEKLNKIFSKENIEMFLTKD--KEIFSKK-WDYI 981

Query: 850  SVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
                 +   ++      RID++ I         I+I ++KT                 QL
Sbjct: 982  YSEYILYDYEEKK--EYRIDRLMIKDNGDGTGEIYIVDFKTGGKN-----------QNQL 1028

Query: 905  SIYEKILKDSYP---NKSLVCLLI 925
              Y  +LK ++    N ++    +
Sbjct: 1029 DTYRDVLKKNFEELQNYNIKTKFL 1052


>gi|241203012|ref|YP_002974108.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240856902|gb|ACS54569.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 685

 Score =  192 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 107/665 (16%), Positives = 195/665 (29%), Gaps = 127/665 (19%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQCIEERFSLLS 70
            E I +D+       ++D   +       G   +   A+   L         E+   L++
Sbjct: 77  VERICRDVLGANAGVMADALSWSGTFHGIGARLLRDYAEQIGLDPGFTIHDREDSADLMN 136

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT-L 129
                     + ++   +   + P     L                 +      A+    
Sbjct: 137 LI--------RHDLGFSKTESRFPTKGTCLAIYSRAVNSETALDLVLRDVFPWCATWEKQ 188

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + L A Y EAK+   VLD++DL++    ++ +    A I   I    +H+L+DE QDT+
Sbjct: 189 LRELFASYVEAKQSQNVLDYDDLLLYWAQMVGE----AMIAEDIGSRFDHVLVDEYQDTN 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++ +L              + L  VGD+ QSIYSF  A  + +L           
Sbjct: 245 RLQASILLAL----------KPQGQGLTVVGDDAQSIYSFRAATVRNILDFPAAFS---- 290

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 +I+ L  ++RST  IL   + V  +       +                     
Sbjct: 291 ---PAANIVTLDRNYRSTQPILAAANAVIDLASERFTKN--------------------- 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW +  S    +    ++               +  AR I   + +              
Sbjct: 327 LWTERQSSERPRLVTVRD--------------EAEQARYITDMVLDNREEG--------- 363

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +  K   VL R    +  +            I  V        D   +KD++A  RF  
Sbjct: 364 -LTLKQQAVLFRASHHSGPLEVEL----TRRNIPFVKFGGLKFLDSAHVKDMLAALRFAQ 418

Query: 430 SQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           +  D ++   +++  P    S             +                 +   +  +
Sbjct: 419 NPRDRVAGFRLMQILPGVGPSTAQKTLDLMAEDASPITALGAMPAPPRSGEDWTMFVAML 478

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            EL                  A    +  +          L +          + Y+S +
Sbjct: 479 QELKTGKAGWPAEIGLARQWYAPHLER--LHEDAATRQADLLQLEQIA-----SGYASRE 531

Query: 549 ELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             ++EL   PP      +     + + + + T+H+AKG E   VF+++            
Sbjct: 532 RFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWTKVFMLNVVDGCIPSDLAV 591

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                +  EE  RLLYV MTRA D L +
Sbjct: 592 GTT----------------------------------AEIEEERRLLYVAMTRARDGLDL 617

Query: 665 CKHSN 669
                
Sbjct: 618 VVPQR 622


>gi|328857036|gb|EGG06154.1| hypothetical protein MELLADRAFT_87299 [Melampsora larici-populina
           98AG31]
          Length = 1091

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 88/674 (13%), Positives = 178/674 (26%), Gaps = 163/674 (24%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLI-------------INTNDLLKKRDVSAWIRYKIDQ 175
               L   Y  A + +  LDF+DL+                  ++      +   ++   
Sbjct: 216 FTNELFDAYNSALRDDNCLDFDDLLTYGFVRHHMYTRLHLPAHIVASFACISERLFRCHP 275

Query: 176 E----INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +    I H+LIDE QDT+++Q+++++ +                +  VGD  Q IY +  
Sbjct: 276 QVISYIRHVLIDEFQDTNVVQYQMMKHMAY-----------RGAVTIVGDPDQGIYGWRS 324

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           AE   ++R +     +  +                                        +
Sbjct: 325 AEVGNLMRMREELPLKLAHPKC-------------------------------ISFCCAA 353

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                H+  + G      L            +            L         +  I  
Sbjct: 354 RYYSLHQKVKHGSDFDECLSSLYTDTQRIDKSLFTSHPKVSLPVLQAFRKPPDESEFIVR 413

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I  +I             +   D  +L+R    +  +    +       I         
Sbjct: 414 EIQRLIAH-------TGGQLNFNDFSILIRYGALSRNVEAALQA----AHIPTRMVGGVK 462

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------ 465
             +   +KD++A  +   +     +F  +   P        I  I      +E+      
Sbjct: 463 FFERTEVKDIIAYLQLADNPMFVPAFDRIANVPARAIGAVTIKAIKEAAKASESNPMEIM 522

Query: 466 ----VYEYIQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFIS- 519
                 +     +    SKF+  +  I ++  +A+   S  +    ++          + 
Sbjct: 523 RRVVRGDSFPGLSQTHRSKFKKFLCVIGKIQSMARSGSSIVEIIDTLIAQVNYVAHLQAP 582

Query: 520 --RFGNEVIDVLDEFLNFTLRNE-------------QNSYSSLQE--------------- 549
                +E +  ++E  +F L  E                  +L                 
Sbjct: 583 SLSDADERLQNVEELKSFALHLEGGSSPSSSQPTQSGEDTDTLDWKVLGNDDEALADLEI 642

Query: 550 -----------LISELEQYPPTIKRAHSANHNE-----VRIMTVHTAKGLESPVVFLVDT 593
                      L   L +   +                V I T H +KGLE PVVF+   
Sbjct: 643 EPLNSDEEPTGLRRFLTESMLSTDTEAEEGKANKNAPKVTISTCHASKGLEWPVVFVPAV 702

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            + +F                                      +   + +++E  RLL+V
Sbjct: 703 ENGIFP-----------------------------------FYRCKDEESEKEERRLLFV 727

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            MTRA   L +          ++  ++    V          K     N++   +    +
Sbjct: 728 AMTRAQGLLYLSHCGQRMAGAETRNQSISPFVSSLTTQTTTTKSKSSNNAVFTSKRPMLD 787

Query: 714 WSTHHPENTPLERE 727
            +     +  L R 
Sbjct: 788 ETVRQELSDVLSRP 801


>gi|296436177|gb|ADH18351.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/9768]
 gi|296438037|gb|ADH20198.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/11074]
 gi|297140539|gb|ADH97297.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/9301]
          Length = 1026

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 141/953 (14%), Positives = 277/953 (29%), Gaps = 172/953 (18%)

Query: 5    FGLSL-NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
              LS  + + + +   +    +     + +  + S+     + L   + L    Q     
Sbjct: 205  LALSPLSITLQKLKAWVSRYQHLAPLSLEEMQAFSLRF-KQSDLSIERELPAFVQQFETN 263

Query: 64   ERFSLLSSFFLTQ--KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                 L   F     +   ++N   ++++  +  L    +               +   +
Sbjct: 264  PY--SLDMLFFPGMVQKFQEENRNKKKLSAPASPLDPFFQDWIQ---------LAHPFCQ 312

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                  TL K +  H +    ++     ++ I     LL   D    +  ++ ++   +L
Sbjct: 313  KEPIFHTLLKSVQQHLKTHCAQS--YSHDESIATLESLLAHNDT---VVSQLRKQFQLVL 367

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   QW++   L         +     +LF +GD KQSIY +  A+    L+ K
Sbjct: 368  IDEFQDTDKRQWQIFSKLFA-------SPDYSGSLFLIGDPKQSIYEWRNADLPTYLQAK 420

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                K A         + L  ++RST +++  ++ +FS+P       ++      H    
Sbjct: 421  HSFPKEAQ--------LILDTNYRSTPELMQALNHLFSLPTPFLETPQNILYHPLH---- 468

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G+ ++     S            + S  D   +    S  A  +            
Sbjct: 469  --SKGSAEISYSEFS---------PIHFFSSEDIQEETLWISKTASYLRS---------- 507

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA-IKD 420
                     I   ++ VLV+              L     I +       + D       
Sbjct: 508  ------AYSIPFGNMAVLVQDYPQALK-------LITHSTIPMAYCKEKRIFDRTESPYL 554

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+ L   +L  E+      +L S LF  S  +   I        +++  + +      S 
Sbjct: 555  LILLLEALLYPENQQKIQAILMSRLFQLSSTE---IHQHLKTFSSLFFTLNRHLYHY-SL 610

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                 K +                  +L    G     +  G+ +   L+    +  +  
Sbjct: 611  LATFYKLMG---------------ENVLSQTIGETLLQTPLGDIIFQELEALCLYLDKTT 655

Query: 541  QNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            +N +  L  LI+ L            + S + N ++I TVH++KGLE  VVF        
Sbjct: 656  ENPHHKLLHLINILITGKYDEELSFSSQSNDENMIKITTVHSSKGLEYDVVFCSCLNK-- 713

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                                                      K+ T   + R +YV  TR
Sbjct: 714  -----------------------------------------AKEKTPSVHMREMYVACTR 732

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            A   L I        EK+S        + +  +  +      L  ++       +  S  
Sbjct: 733  AKKFLFIPFSPI---EKRSLSTKKLSALANYANVTKHHSVPHLVETLTSSSPELFSSSFQ 789

Query: 718  HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
             PE++     E + Q      +P      I +  +    L+ S         L   L   
Sbjct: 790  PPESSLTPDRERLPQ-QTYFSLPHLPSRTIHSFSSTVENLHFSE----PIQELPPSLLFP 844

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM- 836
                 G +IHKLL+ +        +       T             +   I  +    + 
Sbjct: 845  GGSLTGTLIHKLLESLAGNFAACFEEIFNKAQTLLKNTPLEGYESIIAEKICTVFSTTLP 904

Query: 837  -------MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
                   +      +  +E          ++  +  G +D     +   FI ++KT    
Sbjct: 905  FSSGSFALRNVHPHNIRAE----ETFLLQEEGELWQGIVDLFFEHKDRFFIIDWKTSFLG 960

Query: 890  PQE----IEHI-----PYTHIAQLSIYEKI----LKDSYPNKSLVCLLIYVSE 929
             +      + +           Q  +Y K     L        +    +++  
Sbjct: 961  DETSCYSPDQLHLYIQRQGLDRQERLYRKAAKRFLHQFNSLLQVEMAFVFIRG 1013


>gi|156744107|ref|YP_001434236.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
 gi|156235435|gb|ABU60218.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941]
          Length = 1180

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 119/842 (14%), Positives = 246/842 (29%), Gaps = 103/842 (12%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
             R GL ++        DL+ L   +++D+       +      +L   Q + +       
Sbjct: 295  ARLGLPVDARLLD-TADLFILLSKRLNDLRLAYFKDVREPTRHLLTIIQAISRIKDELWS 353

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
             + FS L+                          +      +D     R      +    
Sbjct: 354  PDEFSRLADV---------------------EAQRLIAAAERDYPGATRKAIEARERAAR 392

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
              A+L     +   YE   ++   LD+ DLI+     L+       I   + +  +++L+
Sbjct: 393  QAAALRELAQVYPRYEAMLREAGALDYGDLIVLPAQALRDHPA---IAADLRRRYHYLLV 449

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD +    E+IR L                ++AVGD  QSIY F GA    +    R
Sbjct: 450  DEFQDINYASGELIRLL----------DGGRGRVWAVGDAWQSIYRFRGASAANLDEFPR 499

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                          I  L  ++RS   IL     V S    A                  
Sbjct: 500  YYPN--------ARIFYLTRNYRSLQPILDAGAAVMSGDPRAAERPPLVAQ--------R 543

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
               G   + E    +   +                +  ++   AR      S  +     
Sbjct: 544  NGGGAHTVVEWAAPRSQDEYAALARDILRRVRLRNRWLASGCAARCRMPR-SGTMRRVAR 602

Query: 363  FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                  R  +  D  +L R  +    +  +       + I V   +   + D   +KD +
Sbjct: 603  RPPLSTRQWRFGDHAILCRTHEQAGAVAAVLET----HGIPVDYIN--DVFDTPGVKDAL 656

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            A+    +   +    +  L  P       D+ ++      ++       +         +
Sbjct: 657  AVC-AQVGATNSAGLLRALTMPEHRLDPADLNRLVDLARRSQQALPRAARDPQIIACLSE 715

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGR--QQFISRFGNEVIDVLDE--------- 531
               + +  +  I +          +L A   R  +   +R  +     +           
Sbjct: 716  AAQQTLARIRIIVEALEGEGDAWQVLTAYLFRHSRAMRARLIHAAQGHIRAQRELAALGQ 775

Query: 532  FLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             L       + +     +    ++            + +     + VR+MTVH AKGLE 
Sbjct: 776  LLAIARNFVRAAAPDECDASHFIDYIRALRAAGVRPRSSIGGQVDAVRVMTVHAAKGLEF 835

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            P+V++       F  +  ++   +P+      I                      +S ++
Sbjct: 836  PIVYVPGLQEGRFPVRGNQRGIPLPAGLIRGPI----------------------ESEEQ 873

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E   LLYV MTRA D+L++ +     +  KS +R+   ++      +    +++   S  
Sbjct: 874  EERYLLYVAMTRARDRLVLSRSLTCGDGAKSAERS--SLLPGDGQGNGAPWRVRFIESAV 931

Query: 706  KDEWIAYEWSTHH-PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                   +      P         +I     +++   +    + +D++    ++ +  + 
Sbjct: 932  NCPVPTPDMRLQDTPLPRMPLPASSIDLDGCKRRFLYQYVYQLYDDLSPFLRMHQTIREC 991

Query: 765  KGKTNLESLLSDNQTFNRG--LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                  ++          G   ++   LQ           ++          +W      
Sbjct: 992  AKILTEQARRDALPADEAGLRTLVFGQLQRYELDSVLYADDYAAEALRHARTVWDDLRTG 1051

Query: 823  NL 824
             L
Sbjct: 1052 RL 1053


>gi|255507242|ref|ZP_05382881.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis D(s)2923]
 gi|289525682|emb|CBJ15163.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis Sweden2]
 gi|296435250|gb|ADH17428.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis E/150]
 gi|296438969|gb|ADH21122.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis E/11023]
          Length = 1026

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 140/958 (14%), Positives = 277/958 (28%), Gaps = 182/958 (18%)

Query: 5    FGLSL-NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
              LS  + + + +   +    +     + +  + S+     + L   + L    Q     
Sbjct: 205  LALSPLSITLQKLKAWVSRYQHLAPLPLEEMQAFSLRF-KQSDLSIERELPAFVQQFETN 263

Query: 64   ERFSLLSSFFLTQ--KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                 L   F     +   ++N   ++++  +  L    +               +   +
Sbjct: 264  PY--SLDMLFFPGMVQKFQEENRNKKKLSAPASPLDPFFQDWIQ---------LAHPFCQ 312

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                  TL K +  H +    ++     ++ I     LL   D    +  ++ ++   +L
Sbjct: 313  KEPIFHTLLKSVQQHLKTHCAQS--YSHDESIATLESLLDHNDT---VVSQLRKQFQLVL 367

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   QW++   L         +     +LF +GD KQSIY +  A+    L+ K
Sbjct: 368  IDEFQDTDKRQWQIFSKLFA-------SPDYSGSLFLIGDPKQSIYEWRNADLPTYLQAK 420

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                K A         + L  ++RST +++  ++ +FS+P       ++      H    
Sbjct: 421  HSFPKEAQ--------LILDTNYRSTPELMQALNHLFSLPTPFLETPQNILYHPLH---- 468

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G+ ++     S            + S  D   +    S  A  +            
Sbjct: 469  --SKGSTEISYSEFS---------PIHFFSSKDIQEETLWISKTASYLRS---------- 507

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA-IKD 420
                     I   ++ VLV+              L     I +       + D       
Sbjct: 508  ------AYSIPFGNMAVLVQDYPQALK-------LITHSTIPMAYCKEKRIFDRTESPYL 554

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+ L   +L  E+      +L S LF  S  +   I        +++  + +      S 
Sbjct: 555  LILLLEALLYPENQQKIQAILMSRLFQLSSTE---IHQHLKTFSSLFFTLNRHLYHY-SL 610

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                 K I                  +L    G     +  G+ +   L+    +  +  
Sbjct: 611  LATFYKLIG---------------ENVLSQTIGETLLQTPLGDIIFQELEALCLYLDKTT 655

Query: 541  QNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            +N +  L  LI+ L            + S + N ++I TVH++KGLE  VVF        
Sbjct: 656  ENPHQKLLHLINILITGKYDEELSFSSQSNDENMIKITTVHSSKGLEYDVVFCSCLNK-- 713

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                                                      K+ T   + R +YV  TR
Sbjct: 714  -----------------------------------------AKEKTPSVHMREMYVACTR 732

Query: 658  ASDQLII---CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            A   L I        + + KK +    Y  V         V+ +  ++            
Sbjct: 733  AKKFLFIPFSPIEKRSLSTKKLSALANYANVTKHHSVPHLVETLTSSSPELFSSSFQPPE 792

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI--NEPYILNPSTIDTKGKTNLES 772
            S+  P+   L ++          +      S ++N         L+PS +          
Sbjct: 793  SSLTPDRERLPQQTYFSLPHLPSRTIHSFSSTVENLHFSEPIQELSPSLL---------- 842

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                      G +IHKLL+ +        +       T             +   I  + 
Sbjct: 843  ---FPGGSLTGTLIHKLLESLAGNFAAYFEEIFNKAQTLLKNTPLEGYESIIAEKIFTVF 899

Query: 833  ENPM--------MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
               +        +      +  +E          ++  +  G +D     +   FI ++K
Sbjct: 900  STTLPFSSGSFALRNVHPHNIRAE----ETFLLQEEGELWQGIVDLFFEHKGRFFIIDWK 955

Query: 885  THHHVPQE----IEHI-----PYTHIAQLSIYEKI----LKDSYPNKSLVCLLIYVSE 929
            T     +      + +           Q  +Y K     L     +  +    +++  
Sbjct: 956  TSFLGDETSCYSPDQLHLYIQRQGLDRQERLYRKAAKRFLHQFNSSLQVEMAFVFIRG 1013


>gi|256374998|ref|YP_003098658.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919301|gb|ACU34812.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 1349

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 114/834 (13%), Positives = 229/834 (27%), Gaps = 148/834 (17%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
           R  +             W L +  VS   + +         T    +   +        E
Sbjct: 147 RLPVEPGVRLLT-ETAAWQLAHRVVSAWTQDLDTDKIPTTITSYLLSLAGELGEHLVEPE 205

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           +  +         +  P+       + +K  ++ +                         
Sbjct: 206 QLLAHAEHLCALIEHAPKAPRQKDALPEKLQEIVDA------------------------ 241

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                    L   Y   K+++ VLDF D +     L         +     +    +L+D
Sbjct: 242 QRLRVALLPLLDAYRARKRRDAVLDFADQMSLAARLATGHPE---VVEGERERYGAVLLD 298

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT   Q  ++R+L  D          P  + +VGD  Q+IY + GA    + R +  
Sbjct: 299 EYQDTGHAQRVLLRALFGD--------GDPMPVTSVGDPAQAIYGWRGASAANLPRFRED 350

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                          EL  SFR+  ++L + + V      A          +RHR     
Sbjct: 351 FP--------PADKYELLTSFRNPPEVLHLANAVSGPLRAAG----LDVAPLRHREGVEP 398

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
               + L+  V ++ +   +   E W ++ D+  +                         
Sbjct: 399 GDVRIGLFPDVRAELEWLADTVAEQWRAHVDTSDE------------------------- 433

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                         VLVR+R D P I  + R    D  + V       L D   ++DL +
Sbjct: 434 ---------PPTAAVLVRRRSDMPAIAAVLR----DRGLPVEVVGLGGLLDEPEVRDLTS 480

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY-------------- 469
             R ++      +   +L    +  +  D+  +  +  +                     
Sbjct: 481 ALRVLVDPLAGTAATRLLTGSRWRIAAFDLAAMWQRARDLAGAPARKSPDEDPLSVLADA 540

Query: 470 --------------------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                                  ++  G  + + +   +  L          +    +  
Sbjct: 541 LPGEHSEQAGLADALDDPGDPSAYSAEGYRRIRRLGAELAALRRRL-TQPLPELVADVER 599

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELE----QYPPTIKRA 564
                 + ++R G      LD F +        S + +L  L+  L              
Sbjct: 600 TLLLDIEAVARPGGVGRAHLDAFADVVSDFAAASPAATLPALLDYLRTAEHAEDGLAPGE 659

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI-----MPSLNDDPGIP 619
                N V+++T+H+AKGLE  +V +      VF  +      +     +P+        
Sbjct: 660 VEVVDNRVQLVTMHSAKGLEWRIVAVPHVVKDVFPGRRKSASWLKSVTELPAALRGDAQD 719

Query: 620 IWIPQ------SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           +   +       K     +       ++    E  RLLYV +TR+   L++  H      
Sbjct: 720 LPELRVPGGANRKEVEEALDRHADEFEERRLVEERRLLYVALTRSEHSLLVSGHWWGETG 779

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
                 + +            ++++  T      +   +  +    +  PL  +    Q 
Sbjct: 780 ATPKGPSAF---------LTELREVVTTAEHPPADVAHWAPAPGPEDENPLAAKAKTAQW 830

Query: 734 MDEQ--KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
             +        + +     +     L  +          E           G  
Sbjct: 831 PADPLGSRRDAVSAGAAMVVAALDRLREAAEHEPPGEPDEPDEPAVTAAEAGTA 884



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 71/271 (26%), Gaps = 18/271 (6%)

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +  +               +   +    +     PE    + +  + +        +++ 
Sbjct: 1088 LVPADPVPAEPVLPTDPEIVLPTDPEISDPDAADPEGWARDVDVLLAERAAAMDRRERVL 1147

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
             P    +++   L         +         N    RG   H  L+         R+  
Sbjct: 1148 LPEHLSVSQLVELATDPDQLARRLRRPLPFPPNPLARRGTAFHTWLE---------RRFG 1198

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                   +  L  A +   +       L+   + +A +    +  +V          + +
Sbjct: 1199 AVRLLELDE-LPGAADEDAVPDGELGRLQEAFLASAWAD--RTPHAVEVPFEAEVDGLAV 1255

Query: 865  SGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLV 921
             GR+D +         + ++KT      +      +   QL+ Y          P + + 
Sbjct: 1256 RGRMDAVFADPDGGWTVVDWKTGRVPEAD---RVPSLSVQLAAYRLAWASLSGSPVELVR 1312

Query: 922  CLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
                YV + +          +    +   +P
Sbjct: 1313 AAFHYVRDDRTLRPADLLDAEGLRALIRTVP 1343


>gi|111225391|ref|YP_716185.1| putative ATP-dependent DNA helicase PcrA [Frankia alni ACN14a]
 gi|111152923|emb|CAJ64671.1| putative ATP-dependent DNA helicase PcrA [Frankia alni ACN14a]
          Length = 1208

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 96/671 (14%), Positives = 200/671 (29%), Gaps = 112/671 (16%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L A Y  A+++  VLDF D +     L    +    +          +L+DE QDTS
Sbjct: 282 LAALVADYRAARRERDVLDFGDQVTYAARLA---ETMPEVGRAERARAAVVLLDEYQDTS 338

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           + Q  ++  L                + AVGD  Q+IY + GA    +        +   
Sbjct: 339 VAQRRMLTGLFG----------GGHPVTAVGDPCQAIYGWRGASVANLDHFPTHFAR--- 385

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
             G+   + EL ++ RS   +L + + V +       +                    V+
Sbjct: 386 ADGRPADVYELSVNQRSGGRLLDLANAVAAQLRARHRV--------------------VE 425

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L  +       +                  +S +     IA  +  ++   T        
Sbjct: 426 LRPRADVADRGETVVAL------------HASWADEVAWIADRLRAVVDAGT-------- 465

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                DI VLVR R D P +    + +     + V       L     + +++A+   + 
Sbjct: 466 --DPGDIAVLVRARGDIPPLLTALQAV----GLPVEVVGLTGLLTVPEVAEIVAVLEVLD 519

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--------------------------- 462
           +   + + V +L  P       D+  +     E                           
Sbjct: 520 APTANAALVRLLTGPRVRLGARDLAALGRHAREVVRSPPPVADAEPDLPGRADPLAAAVA 579

Query: 463 ----------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                     ++ + +   + +  G  + + +   I EL          D    ++    
Sbjct: 580 DVDPADVVALSDVLDDPGPEMSAEGRLRVRRLAAEIAELRAHIGEG-LLDLLHRVVATIG 638

Query: 513 GRQQFISRF---GNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSAN 568
              +  +          + +  FL+      + +  +SL   +  L       +    + 
Sbjct: 639 LDVELTATEAAVRARRQENVAAFLDVAADFTDPDGTTSLHAFLGFLRAAREHERGLDVSG 698

Query: 569 H---NEVRIMTVHTAKGLESPVVFLVDTGSQVFS-----HKHIKKMHIMPSLNDDPGIPI 620
               + + +MT+H +KGLE  VV + +   +VF       +      ++P         +
Sbjct: 699 PSGADAIALMTMHRSKGLEWEVVAVPNLSERVFPDVTVRDQWTTSPGVLPVPLRGDAADL 758

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
              +   +   +      ++   + E  RL YV +TRA   L    H     +K+    +
Sbjct: 759 PAFEVSDQKADLDAFAAEVRAYAEREERRLAYVAVTRAKSLLFASGHWWGPAQKRPRGAS 818

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
            +             +         +    A           P E E   +++   + + 
Sbjct: 819 VFLTELAEHARGGGGRVDLWAPRPAEKSNPALATPRRFAWPIPYEPEPYARRVEAARDVL 878

Query: 741 KKLFSPIKNDI 751
            +L + +    
Sbjct: 879 ARLEAALTPPP 889



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 63/233 (27%), Gaps = 28/233 (12%)

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                 E E  + +    +     +  P     +E   L         +            
Sbjct: 977  AELDREAELLVVEERAARVPQLDVPMPANLTASEIVRLQADPAAFARELVRPLPRQPVAA 1036

Query: 780  FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
              RG   H  ++ +F                 +A+  P  +   L     R L+   + T
Sbjct: 1037 ARRGSRFHAWVEELFD-----------HRALIDAEDLPGAQDAELTDDDLRSLQEAFLRT 1085

Query: 840  AMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPY 898
                 S    ++      P    I+ GRID +  +      + ++KT      E      
Sbjct: 1086 PY--GSRRPAAIEEAFELPLAGRIVRGRIDAVYDLGGGRWEVIDWKTGQSSADE------ 1137

Query: 899  THIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIP---QNKLNKAFAE 946
                QL++Y              +    +YV    V   P   +++L    A 
Sbjct: 1138 ---LQLAVYRLAWARLRGVDPSAVDAAFLYVRTGAVVRPPLVTEDELAALLAA 1187


>gi|124005926|ref|ZP_01690764.1| UvrD/REP helicase domain protein, putative [Microscilla marina ATCC
           23134]
 gi|123988609|gb|EAY28250.1| UvrD/REP helicase domain protein, putative [Microscilla marina ATCC
           23134]
          Length = 949

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 111/667 (16%), Positives = 226/667 (33%), Gaps = 82/667 (12%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              + +       +   L +       ++  +    +    +  + L   + +  EE K 
Sbjct: 294 KWYSGKAQPGIDAIAPSLAQDIAHLRNLKSIYLLVSLITPHIYKMALIHEVESELEELKI 353

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +N  +   D      +++    V  +I  ++ ++ NHILIDE QDTS++QW+ +  L E+
Sbjct: 354 ENNSIHISDTNKKIAEIISNEPV-PFIYERVGEKYNHILIDEFQDTSVLQWQNLLPLVEN 412

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI------------------N 244
                N +        VGD KQ+IY + G E ++++   +                    
Sbjct: 413 NLAEHNFN------LIVGDAKQAIYRWRGGEMEQLVHLYKNNIGALLQPSLMQENTFNLL 466

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
           + R     Q     +L  ++RST +++   +  F    +                 R   
Sbjct: 467 RDRYATLHQNHLAAQLKHNYRSTREVIEFNNSFFRDLVD---------------MYRHEF 511

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
               Q++++   Q   + N +          + +++  +     I  TIS  +       
Sbjct: 512 PLLDQIYDEDFEQAIPEQNTKTGG-HVEIQFVNKDTYHTDTLEYILVTISTALNQGFAK- 569

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                    KDI VL R       I    +         V+     +L     +  ++A 
Sbjct: 570 ---------KDIAVLTRSNGSGQEIAVFLKS----KGFPVISQTSLLLASDDKVHFIIAF 616

Query: 425 GRFILSQEDDLSFVCMLKSPLF---NFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            + I +  D L    +L          + DD+     +   T+ + E+ +     G    
Sbjct: 617 LKLIKNPHDRLLRSEVLYLFYRVIKRITPDDMINNVIKSLITKPIAEFFEHIQGEGYDIS 676

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           Q +++ +            ++    ++      +          ++ L  FL+  +    
Sbjct: 677 QGMLQQLG----------VYELVEKLIEVFGLFEH------QNRLEYLFRFLDLVIEFNL 720

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              ++L + +   E     +      + + + I T+H +KGLE  VV L     +    +
Sbjct: 721 QKNTTLTDFLEYWEDKKDVVSVNTPKDQDAITITTIHKSKGLEYSVVILPFAEWEYTPKR 780

Query: 602 H-------IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
           +        ++       ++     I    SK    +V+D      + T  E   LLYV 
Sbjct: 781 NSTMWINLPREEFTFKHSSNYLSTSIVQVSSKLAETLVADQYHDEIEKTFIENVNLLYVA 840

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            TRA D+L I         KK  +R    +++    N +  ++   T  I   E  A   
Sbjct: 841 FTRAVDRLYIFTRLENFASKKPPKR-VSTLMHQYLLNRQFWEEGNATYPIEMGEPKAQGE 899

Query: 715 STHHPEN 721
           +T   E+
Sbjct: 900 ATEEDED 906


>gi|183980978|ref|YP_001849269.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium marinum M]
 gi|183174304|gb|ACC39414.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium marinum M]
          Length = 1110

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 136/1009 (13%), Positives = 271/1009 (26%), Gaps = 165/1009 (16%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             +    +           +  + + ++ T +       ++L  A  T         L   
Sbjct: 100  LDGTAAERDARQQRLRDALAGFDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDEL 159

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS--LTLA 130
                          ++ +      ++ L+ ++        +         + A+  +  A
Sbjct: 160  VTEIVDDLYLVHFGRDRDDPPLTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFA 219

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             ++    E  K++  +L ++DL++   D L   D +A  R ++ Q    +++DE QDT  
Sbjct: 220  HHVLEELETRKRRRGILGYDDLLLRLADALASEDSAA--RARMQQRWPVVMVDEFQDTDA 277

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +QW+VI           +  S   TL  +GD KQ+IY+F G +    L   +        
Sbjct: 278  VQWQVID----------SAFSGRCTLILIGDPKQAIYAFRGGDIVTYLHAAQ-------- 319

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                     L  ++RS + ++  +  V    E              H+  R+        
Sbjct: 320  --TAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVKAHHQGHRLAGAPHNDA 377

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                V +  +              +LP +     + R +A  I  ++ +   F+    R 
Sbjct: 378  LRLRVVRRAT-------LGRRGIQNLPIDILRDHIGRDLASDIGALLASGATFAG---RA 427

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +QA DI V+V K KD             D  I  V      +    A  D +AL      
Sbjct: 428  LQANDIAVIVEKHKDARACHRAL----TDAGIHAVYTGDTDVFSSEAADDWLALLEAFDQ 483

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                        +  F  + +D+ +      +                     V + + E
Sbjct: 484  PHRPGIVRAAAATMFFGKTANDLARGGDALTD--------------------RVAETLRE 523

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                A+       F          +    + G   +  L        +       +L  L
Sbjct: 524  WADYARERGVAAIFEAAQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPAL 583

Query: 551  ISELEQYPP------TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               L              R   ++   V+IMTV  +KGL+ PVV+L             +
Sbjct: 584  RDWLRGQREDRGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFA--------FNR 635

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
             +     +    G    +      +     + +   K    + +RL YV MTRA  Q++ 
Sbjct: 636  NIQERELVLFHDGGTRCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVA 695

Query: 665  CKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                               ++       D    +   DE                +    
Sbjct: 696  WWSPAYDEPNGGLSRLLRGRRPGDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESV 755

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFS------------------PIKNDINEPYI 756
                P          +     ++ I  +                     P   + ++   
Sbjct: 756  IAAAPAIAGRPAPSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVA 815

Query: 757  LNPSTIDTKGKTNLESLLSD-NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
              P T          S ++D       G ++H +L+              +    ++A  
Sbjct: 816  EVPLTEVVMSGPEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWW 875

Query: 816  WPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKK------- 860
                    L  ++  + + P+        +      D   E+     +    +       
Sbjct: 876  PVQVPAAQLAAALVPMHDTPLGPLAGGLTLRQIGLPDRLREMDFEFPLAGGDEADAGGHA 935

Query: 861  ---------------------------------------DIIISGRIDQISISQQ----N 877
                                                      +SG +D +          
Sbjct: 936  PDLRLADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQR 995

Query: 878  IFIFEYKTHHH-VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
              + +YKT+    P         H         I    + +  L  LL 
Sbjct: 996  YLVVDYKTNWLGDPDRPLTAADYHRP-----RLIEAMLHSDYPLQALLY 1039


>gi|15605371|ref|NP_220157.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis D/UW-3/CX]
 gi|237803068|ref|YP_002888262.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis B/Jali20/OT]
 gi|237804989|ref|YP_002889143.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
            B/TZ1A828/OT]
 gi|255311463|ref|ZP_05354033.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 6276]
 gi|255317764|ref|ZP_05359010.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 6276s]
 gi|255349024|ref|ZP_05381031.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 70]
 gi|255503563|ref|ZP_05381953.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 70s]
 gi|8134452|sp|O84645|EX5B_CHLTR RecName: Full=Exodeoxyribonuclease V beta chain
 gi|3329087|gb|AAC68243.1| Exodeoxyribonuclease V, Beta [Chlamydia trachomatis D/UW-3/CX]
 gi|231273289|emb|CAX10204.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
            B/TZ1A828/OT]
 gi|231274302|emb|CAX11097.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis B/Jali20/OT]
 gi|296437105|gb|ADH19275.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/11222]
 gi|297748769|gb|ADI51315.1| Exodeoxyribonuclease V beta chain [Chlamydia trachomatis D-EC]
 gi|297749649|gb|ADI52327.1| Exodeoxyribonuclease V beta chain [Chlamydia trachomatis D-LC]
          Length = 1026

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 139/958 (14%), Positives = 276/958 (28%), Gaps = 182/958 (18%)

Query: 5    FGLSL-NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
              LS  + + + +   +    +     + +  + S+     + L   + L    Q     
Sbjct: 205  LALSPLSITLQKLKAWVSRYQHLAPLSLEEMQAFSLRF-KQSDLSIERELPAFVQQFETN 263

Query: 64   ERFSLLSSFFLTQ--KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                 L   F     +   ++N   ++++  +  L    +               +   +
Sbjct: 264  PY--SLDMLFFPGMVQKFQEENRNKKKLSAPASPLDPFFQDWIQ---------LAHPFCQ 312

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                  TL K +  H +    ++     ++ I     LL   D    +  ++ ++   +L
Sbjct: 313  KEPIFHTLLKSVQQHLKTHCAQS--YSHDESIATLESLLAHNDT---VVSQLRKQFQLVL 367

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   QW++   L         +     +LF +GD KQSIY +  A+    L+ K
Sbjct: 368  IDEFQDTDKRQWQIFSKLFA-------SPDYSGSLFLIGDPKQSIYEWRNADLPTYLQAK 420

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                K A         + L  ++RST +++  ++ +FS+P       ++      H    
Sbjct: 421  HSFPKEAQ--------LILDTNYRSTPELMQALNHLFSLPTPFLETPQNILYHPLH---- 468

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G+ ++     S            + S  D   +    S  A  +            
Sbjct: 469  --SKGSAEISYSEFS---------PIHFFSSEDIQEETLWISKTASYLRS---------- 507

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA-IKD 420
                     I   ++ VLV+              L     I +       + D       
Sbjct: 508  ------AYSIPFGNMAVLVQDYPQALK-------LITHSTIPMAYCKEKRIFDRTESPYL 554

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+ L   +L  E+      +L S LF  S  +   I        +++  + +      S 
Sbjct: 555  LILLLEALLYPENQQKIQAILMSRLFQLSSTE---IHQHLKTFSSLFFTLNRHLYHY-SL 610

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                 K +                  +L    G     +  G+ +   L+    +  +  
Sbjct: 611  LATFYKLMG---------------ENVLSQTIGETLLQTPLGDIIFQELEALCLYLDKTT 655

Query: 541  QNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            +N +  L  LI+ L            + S + N ++I TVH++KGLE  VVF        
Sbjct: 656  ENPHHKLLHLINILITGKYDEELSFSSQSNDENMIKITTVHSSKGLEYDVVFCSCLNK-- 713

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                                                      K+ T   + R +YV  TR
Sbjct: 714  -----------------------------------------AKEKTPSVHMREMYVACTR 732

Query: 658  ASDQLII---CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            A   L I        + + KK +    Y  V         V+ +  ++            
Sbjct: 733  AKKFLFIPFSPIEKRSLSTKKLSALANYANVTKHHSVPHLVETLTSSSPELFSSSFQPPE 792

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI--NEPYILNPSTIDTKGKTNLES 772
            S+  P+   L ++          +      S ++N         L+PS +          
Sbjct: 793  SSLTPDRERLPQQTYFSLPHLPSRTIHSFSSTVENLHFSEPIQELSPSLL---------- 842

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                      G +IHKLL+ +        +       T             +   I  + 
Sbjct: 843  ---FPGGSLTGTLIHKLLESLAGNFAACFEEIFNKAQTLLKNTPLEGYESIIAEKICTVF 899

Query: 833  ENPM--------MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
               +        +      +  +E          ++  +  G +D     +   FI ++K
Sbjct: 900  STTLPFSSGSFALRNVHPHNIRAE----ETFLLQEEGELWQGIVDLFFEHKDRFFIIDWK 955

Query: 885  THHHVPQE----IEHI-----PYTHIAQLSIYEKI----LKDSYPNKSLVCLLIYVSE 929
            T     +      + +           Q  +Y K     L        +    +++  
Sbjct: 956  TSFLGDETSCYSPDQLHLYIQRQGLDRQERLYRKAAKRFLHQFNSLLQVEMAFVFIRG 1013


>gi|254292195|ref|ZP_04962964.1| ATP-dependent DNA helicase rep [Vibrio cholerae AM-19226]
 gi|150421897|gb|EDN13875.1| ATP-dependent DNA helicase rep [Vibrio cholerae AM-19226]
          Length = 432

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 69/418 (16%), Positives = 146/418 (34%), Gaps = 84/418 (20%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRLLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +        M K       L  +    Y++  +    LDF+DLI+    LL+  +    +
Sbjct: 146 MLTPPQAKAMAKGEQQ--QLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSSEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNSSQYELVKLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKAL 302

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S      +                                     +   ++    A R+
Sbjct: 303 FSELAEGEKL-----------------------------------KVILANNEDHEAERV 327

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              I          ++      + +D  +L R    + LI           ++    +  
Sbjct: 328 TAEI---------IAHKFLNRTEYRDYAILYRGNHQSRLIEKSL----TQNRVPYKLSGG 374

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETV 466
                   IKD+MA  R +++ +DD +F+ ++ +P        + K+        +++
Sbjct: 375 TSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSL 432


>gi|302336244|ref|YP_003801451.1| UvrD/REP helicase [Olsenella uli DSM 7084]
 gi|301320084|gb|ADK68571.1| UvrD/REP helicase [Olsenella uli DSM 7084]
          Length = 879

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 101/734 (13%), Positives = 192/734 (26%), Gaps = 114/734 (15%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L Y+    +    V                 + ++   L            
Sbjct: 61  GAGSGKTRVLTYRIAHMIADEGVRPWQVLAITFTNKAAAEMRERLGALLPGGTRGMWVCT 120

Query: 66  FSLLSSFFLTQKFTPQKNIIT------QEINKKSPDLKEKLK---------KSQDEFIKI 110
           F  +    L +                 +  +    +   L            +      
Sbjct: 121 FHAMCVRMLREDGELLGYQPNFTIYDDDDSRRLVKSIMADLDIDPKQCPLQSIRARISAA 180

Query: 111 RDRFNTYKMFKSTL--ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++     +  ++         A  +    E    +   +DF+DL++   DLL K      
Sbjct: 181 KNALVGPEEMQAHAQTPLDRAAARVYHSLEGRLARANAMDFDDLLVKAFDLLSKHPE--- 237

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +     +    I +DE QDT+ +Q+ +   L +            + L  VGD+ QSIYS
Sbjct: 238 VLDGYQERFRQISVDEYQDTNGVQYAITNLLAK----------KHQNLMVVGDDDQSIYS 287

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+   +L  ++              +++L  ++RS   IL   + V       +   
Sbjct: 288 WRGADIANILSFRKDYP--------DAVVVKLEQNYRSFGHILNAANAVVRNNARREEKR 339

Query: 289 EDSTT----TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
             +       +    +   +     +  ++   HD   +    +     ++  +      
Sbjct: 340 LFTDRGDGERVELFQAADERDEGRWIGSEIEKLHDGGTSYDDIAVFYRTNAQSRILEDMF 399

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQA---------KDILVLVRKRKDTPLIT----F 391
           L   + Y I   +G    F   + R + A          D+ VL         I      
Sbjct: 400 LRAGVPYKI---VGGTRFFDRAEIRDVTAYLKAVVNPDDDVSVLRVINTPRRGIGTTSIR 456

Query: 392 LTRFLKNDYKISVVGN--------DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             +    +Y ISV                    A+ D  +          +L+ V     
Sbjct: 457 KVQAYAAEYGISVFSAAQACVAETGLLSARVRGALGDFTSTIEAARHFGGELADVVEAIV 516

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                      +   +              A           + +  L  +    +  D 
Sbjct: 517 DRAGLVRALEAEKSVEADGRIENIREFLSVAQEFDETHDDAAETLESLRQLRAAGALDDA 576

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLD-----EFLNFTLRNEQNSYSSLQELISELEQYP 558
             L   +        +  G                +            L   +  L    
Sbjct: 577 AALGPASVAPVGAHAAGAGVPATAAGTPGSGGALPDVAAE-------KLPAFMEWLALRS 629

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                A S   + + +MTVH AKGLE PVVF+      +F H+  +              
Sbjct: 630 DLD--ALSGQTSAITMMTVHAAKGLEFPVVFVAGMEEGIFPHRGHEDEPSS--------- 678

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                     EE  RL YV +TRA  +L +   +          
Sbjct: 679 -------------------------VEEERRLAYVAITRAERKLYLTYAATRRVFGSVQA 713

Query: 679 RTWYDMVYDSFHND 692
                 V +    D
Sbjct: 714 NPRSRFVNEIPEED 727


>gi|283795947|ref|ZP_06345100.1| UvrD/REP helicase [Clostridium sp. M62/1]
 gi|291076588|gb|EFE13952.1| UvrD/REP helicase [Clostridium sp. M62/1]
          Length = 1133

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 90/542 (16%), Positives = 157/542 (28%), Gaps = 115/542 (21%)

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            +     Y+   ++  + DF+DL I    LL++   +A     +     ++L+DE QD S 
Sbjct: 674  EEAFELYQRRLREAGLYDFDDLQIEALRLLEEDREAA---AGLCSRFRYLLVDEFQDISP 730

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            IQ+ +IR+  ++           R LF +GD  QSIY F G++P+   R           
Sbjct: 731  IQYRLIRNWNQE----------GRELFVIGDPDQSIYGFRGSDPECFRRLLAEFP----- 775

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
               +   + L  ++RS+  I      + S                               
Sbjct: 776  ---ETCTVRLEQNYRSSLQITEGACAMISNNPG--------------------------- 805

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                     +               L +    +    R+   I +M+      +  +K+V
Sbjct: 806  --GERRLISAAGEGLPIRIAKAAGRLSEGIFTAREINRMIGGI-DMLDAQEREAVQEKKV 862

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                DI VL R  +    I    R       I  +   R    +   +++     R +L 
Sbjct: 863  RSFSDIAVLCRTHRQAEEIEECLR----KEGIPCIVTGRGEFLEAETVREATGFFRSLLH 918

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
               D                             E   +  ++         + V   + E
Sbjct: 919  DSSDT----------------------------EKAQQQSREIPFMKKRLGESVYGGLRE 950

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                     P +        +   +           + L++     L   +     L  L
Sbjct: 951  KYEPMMKKKPAELIRSYREDRGLLED----------EPLEKLTGMAL-FHRTMREFLDNL 999

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
             +                 + V +MT+H AKGLE P V +          +         
Sbjct: 1000 -AFGADGDLRRCGEKRYTADAVSLMTLHAAKGLEFPAVIIAGVRKYSIPME--------- 1049

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                         Q K              +  +EE  RL YVGMTRA ++LI+      
Sbjct: 1050 -----------PEQKKREEPGKITAESEEDRLKKEEERRLFYVGMTRAKEELILVTSGTE 1098

Query: 671  SN 672
            S 
Sbjct: 1099 SE 1100


>gi|119713303|gb|ABL97368.1| DNA helicase II [uncultured marine bacterium HF10_45G01]
          Length = 428

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 117/322 (36%), Gaps = 70/322 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y++        DF DLI++   +L   + +  IR    +   +IL+DE QDT+ I
Sbjct: 174 PLYKTYQQKLTDLNSCDFGDLILHAVKIL---EFNTDIREIYSKNFKYILVDEYQDTNFI 230

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q + +  L+             + +  VGD+ QSIYS+ GAE K  L   ++ +      
Sbjct: 231 QSKWLNLLSG----------KNKNICCVGDDDQSIYSWRGAEIKNFLEFDKVYEN----- 275

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I L  ++RS+ +IL+V   + S  +N  G +  +T           +   VQL 
Sbjct: 276 ---TKVIRLEQNYRSSQNILSVASDLISNNQNRVGKTLITTM---------EEGDPVQLN 323

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                + +                          A  I+  I   I           +  
Sbjct: 324 CFKNGKDE--------------------------AIGISDEIEKKIN----------KKF 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I +LVR    T               +           +   IKD +A  R I  +
Sbjct: 348 SYNNIAILVRAIFQTREFEERF----LKIGMPYRILGGTKFYERAEIKDCVAYLRLIHQE 403

Query: 432 EDDLSFVCMLKSPLFNFSEDDI 453
           +DDL+F  ++ +P  +  +  +
Sbjct: 404 KDDLAFERIVNNPKRSIGDSTL 425


>gi|320103549|ref|YP_004179140.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
 gi|319750831|gb|ADV62591.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644]
          Length = 686

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 96/691 (13%), Positives = 201/691 (29%), Gaps = 133/691 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +   + P      +    +  ++          +A   Q        E+   
Sbjct: 78  AAREMVARLSSLVGPAADQVWAG--TFHQIANRLLRRREFAEALGYQSNFSILDAEDALD 135

Query: 68  LLSSFFLTQKFTPQKNIITQ----------EINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
           L++          +    T+                P   +              R    
Sbjct: 136 LVAQAIDELGLGTRGRSSTRRGGSESGCGEAGGPLKPSTVQAALSLALNTRTGLPRIVEE 195

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           +  + +       + +   Y   K+    +D++DL++    L+++R  +   R ++ +E 
Sbjct: 196 RFPELSGRIEQ-VEAIARTYAAKKRAANAMDYDDLLVQWMRLMEQRPDA---RDRMAREF 251

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            H+L+DE+QDT+ +Q E++ +L           +    L AVGD+ QSIY F GA    +
Sbjct: 252 THLLVDEMQDTNTLQIEIVETLAA---------AGAGNLTAVGDDAQSIYRFRGANYDNL 302

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L+                 +  L +++RST +I+   +            +  S     H
Sbjct: 303 LKF--------PERHPGCRVFRLEINYRSTPEIVAFTNDSIRHNVEGFPKTLISARPASH 354

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                                                     S+A   +  I   I   +
Sbjct: 355 LKPLAA----------------------------------ATSNAYEESDLICQLIQEAV 380

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                         +  +I VL R   D+     + +       +           +   
Sbjct: 381 EAGR----------RLGEIAVLYRNHHDSI----VLQGDLVTRGLKYTVRSGLRFFEQAH 426

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI------CTQRHETETVYEYIQ 471
           IKD++A  R + +  D+ ++  +L             +I           +T    E + 
Sbjct: 427 IKDVLAHLRVLSNPRDETAWRRLLLLLP-GIGPAAASRILETILPTANPLDTLATAEAMA 485

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVL 529
                   +F   +  + ++        P +    +L      +          + +  +
Sbjct: 486 SAPPRARGRFAAFVADLAQIRAADPGNRPAEAVHAVL-KSGYTEILKQKYEHPEQRLKDI 544

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA---HSANHNEVRIMTVHTAKGLESP 586
           ++      R +      L  L+++L                    + + TVH AKGLE  
Sbjct: 545 EQLGVLAARYDA-----LDRLVADLLLAGDVYGMDTLEPDEPAETLVLSTVHQAKGLEWS 599

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           +VF++    + F +                                      ++    +E
Sbjct: 600 MVFVMRLIEESFPN----------------------------------ARAVIEPGGLDE 625

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
             R+ YV +TRA D+LI+      S   +  
Sbjct: 626 ERRIFYVAITRAKDELILTYPHLLSRGGRGP 656


>gi|256396900|ref|YP_003118464.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
 gi|256363126|gb|ACU76623.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928]
          Length = 787

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 94/730 (12%), Positives = 197/730 (26%), Gaps = 152/730 (20%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A    Q    + +      L    +       + +       +  DL  +++ 
Sbjct: 94  ARTFHAAALRQLQYFWPKAVGGPNPQLVDSKIPLVSEAVRRLRLHAERAELRDLAGEIEW 153

Query: 103 SQ-DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
           ++  + +         K  ++          + A YE AK+    +DFED+++ T  ++ 
Sbjct: 154 AKSTQVVADDYAAAAAKAQRTPPRDAAEVAKVYAEYESAKRDRNAIDFEDVLLLTIGIM- 212

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
             +    I   +  +  +  +DE QD + +Q  ++     +             +  VGD
Sbjct: 213 --EERPDIAATVRNQYRYFTVDEYQDVNPLQQRLLDCWLGE----------RGDVCVVGD 260

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q+IYSF GA+P+ +L                 ++++L   +RST  ++ + + +    
Sbjct: 261 ASQTIYSFTGADPRYLLDFADRFD--------DPTVVKLVRDYRSTPQVVALANALLDRA 312

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E            ++  + R                                    +   
Sbjct: 313 EGRAAK-----ARVQLIAQRADGPRP---------------------------KFAEHPD 340

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
           A   AR +A  I  ++             ++  ++ VL R    +           +D  
Sbjct: 341 AETEAREVAREIKKLVDAG----------VRLSEVAVLYRINAQSEEYEQAF----SDAG 386

Query: 402 ISVVGNDRFILTDHLAIKD-LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
           +  +        +   +++ +    R       D +   +   P       +  +  +  
Sbjct: 387 VPYILRGVERFFERPEVREAIQVWLRGAAKARSDHASDAL---PGLGGGPAEDGEGGSLA 443

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            E   ++      ++            + +                              
Sbjct: 444 TEVRAIFA-----SHGWTPLAPKGAGRLRD------------------------------ 468

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                 + L   ++      +      L    +EL +               V + T H 
Sbjct: 469 ----RWESLAALVSLAEEYGRTHPDAGLDRFSAELRERADAQHAPTVEG---VTLSTFHA 521

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFLV     +                                     +    
Sbjct: 522 AKGLEWDAVFLVGMTEGMMP-----------------------------------ITYAE 546

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                EE  RLLYVG+TRA ++L +      +       +   + D +      D R   
Sbjct: 547 TPEQVEEERRLLYVGVTRARERLFLSWALARSPGGRASRSPSRFLDGLRGGVGRDTREGA 606

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
                            S+   E  P    E I   +  + +       I      P  L
Sbjct: 607 AGGVIRGGGSGRRRVPTSSGDSEERPRRTVEPITCRVCHRALIDAAERKIGRCEGCPSTL 666

Query: 758 NPSTIDTKGK 767
           +P   +   +
Sbjct: 667 DPELYEALRE 676


>gi|320593539|gb|EFX05948.1| ATP-dependent DNA helicase [Grosmannia clavigera kw1407]
          Length = 1099

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 104/684 (15%), Positives = 182/684 (26%), Gaps = 163/684 (23%)

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +   DLL+               +  +LIDE QDT+ IQ+E+++   +          + 
Sbjct: 269 VKCADLLRLHPGCV-------ANVQAVLIDEYQDTNGIQFELMKLFAQ----------AR 311

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             +  VGD  QSIY +  AE K + R  +               I L  ++RS+  IL  
Sbjct: 312 NRITVVGDPDQSIYGWRSAEIKNLFRFLQDYP--------GTDEISLEENYRSSRSILDT 363

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
             +V    +     S         R                                   
Sbjct: 364 SLQVIQQDQKRYQKSLLPVHKKGTRPV--------------------------------- 390

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
             L +   A   A  I   I   +           +++   D+ VLVR    +  I    
Sbjct: 391 --LRRLEDAHKEANWIVSEIRRAM-------LMCGKLLDHSDVAVLVRSAALSRPIEAAL 441

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
               N   +           D   IK L+   R I   +++ +   ++  P      + +
Sbjct: 442 ----NKEGVPYRMIGGRKFFDRAEIKLLLDYLRVIYQPDNNEALSRVINVPRRGVGVNSL 497

Query: 454 FKICTQRH-ETETVYEY---IQKFANCGISKFQHVIKYI--------------------- 488
             +  Q   E  +++       +         ++  K +                     
Sbjct: 498 KSMLEQAECEKISLWTLVTGYLRGDRQVQVNLKNAEKRLNEGLLGLVNGIRANTDTGEET 557

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN------ 539
            +     +  +       IL     R      +  E       +DEF N           
Sbjct: 558 RDDQPRKKTFTLIQIIESILVRLNFRDYIEKTYAPEDEARWANVDEFKNLAREFMAKVGE 617

Query: 540 --EQNSYSS------------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             E++                L + ++ +       K +       V I T+H AKGLE 
Sbjct: 618 LEEEDQLPEVEGEEQEKETSVLGKFLATVSLVSDADKASEDDKKPMVTISTIHAAKGLEW 677

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVF+         H                                            +
Sbjct: 678 PVVFIPAAYDGSLPHSRS--------------------------------------EDTD 699

Query: 646 EYNRLLYVGMTRASDQLIIC------KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           E  RLL+V MTRA   L I             ++ + N      M      +    +K  
Sbjct: 700 EERRLLFVAMTRAKCLLNISYSVRSIHWRENDDQGRDNYEQDLSMFLCPVPSACFAEKGP 759

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
             +    +E           ++   +      +L D+Q       +    D +E    + 
Sbjct: 760 SYDRGLLEEIGEILGRKVPSDSDIYKTLPIGSRLEDDQYPIDLDAAVRYRDEDEYGGRSG 819

Query: 760 STIDTKGKTNLESLLSDNQTFNRG 783
               TK +   E+          G
Sbjct: 820 GGPRTKRRKTFEATGGIYAGSGAG 843


>gi|126651809|ref|ZP_01724010.1| DNA helicase II [Bacillus sp. B14905]
 gi|126591277|gb|EAZ85385.1| DNA helicase II [Bacillus sp. B14905]
          Length = 720

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 86/691 (12%), Positives = 200/691 (28%), Gaps = 149/691 (21%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSME--TGNPTILKKAQTLQQASQTQCIEER 65
           S  +      K     P+    D +   SL+ +           +  + + S    +  +
Sbjct: 78  SAGDMKARFAKFF---PHLPPVDFSTIHSLAFQVVRQTLERQGISYGIIEESDKPGVVSK 134

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             +L   F            T+    +  +L   +   +++ +  ++           + 
Sbjct: 135 KRVLREIFEQLND-------TKITEDQLDELLTYITFIKNKMLPEQEWDIANVKVPRKV- 186

Query: 126 SLTLAKYLNAHYEEAKK---KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                  +   YEE K+    + ++DF+D+++  N++  K      +  +  +  ++   
Sbjct: 187 ------QILQRYEEYKRTGSDHLLIDFDDMLLMANEIFTKN---REVLAQYQRRYDYYFT 237

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDTS +Q E+I  L              + L  V DE Q+IYS+ GA+P  +L  ++
Sbjct: 238 DESQDTSPVQHEIIAKLVA----------VHQNLCVVADEDQAIYSWRGADPDYLLDFQK 287

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           +  +          ++ +  ++RS+A I+   +      +                    
Sbjct: 288 VFPE--------AQVLLMTQNYRSSASIVEPANMFIQRNKKRYNKQMF------------ 327

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                                 +  S+    +         + A+ +   + N+    + 
Sbjct: 328 ----------------TENPAAEPISFKILENY-------HLQAKYLVDQLKNLSKRGST 364

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDL 421
                          +L R       +        +   +     D       H  ++D+
Sbjct: 365 --------------AILYRNNTSAIPLMDAI----DRVGLPFYMKDSTIRFFTHWVVEDI 406

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-----YIQKFANC 476
           M   R   + ++   F  + +      +   +  +     E     +      ++ +   
Sbjct: 407 MNFMRLAYNTKNITVFEKIYRKMNAYITPAQLKALQRVPEEGCVFTQLLEHVELKDYQPE 466

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF- 535
            I + +     I          +P      I       +         +    +  L+  
Sbjct: 467 YIKRIRKTYDSI-----QFDKTTPTAMLEHIRYDFGYERTLKK-MSETLGFNYENLLDIV 520

Query: 536 -TLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             L        ++ E    L +            + N + + T+H++KGLE   V+L+D 
Sbjct: 521 DVLGLIARHTQTMTEFAGRLKQLEHLARSSHIKKDLNAITLTTLHSSKGLEFDRVYLIDL 580

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +   +  +++                                          RL YV
Sbjct: 581 IEGILPSEQEEEIEEET--------------------------------------RLFYV 602

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
           G+TRA   L +  +S              ++
Sbjct: 603 GITRAIRHLELISYSKRFKTSVEPSIFMKEL 633


>gi|229490969|ref|ZP_04384802.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
 gi|229322085|gb|EEN87873.1| UvrD/REP helicase domain protein [Rhodococcus erythropolis SK121]
          Length = 1120

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/993 (11%), Positives = 249/993 (25%), Gaps = 183/993 (18%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLS---METGNPTILKKAQTLQQASQTQCIEER 65
               + E + + +    +  +         +   + TG        + L+           
Sbjct: 125  PQATREPLVRTVHSYAFAVLRLQAAAHGNAPPRLITGAEQDSVLREMLRG-DIEDGALRW 183

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L                   +N  + +L++ + ++ +    +          K    
Sbjct: 184  PERLRPAL--------------GLNGFAVELRDLMLRANER--GLGPEDLVKLGKKRGRP 227

Query: 126  SLTLAKYLNAHYEEAKKKNC------------VLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                A      YE+                   LD  +LI               +    
Sbjct: 228  EWVAAGRFAEAYEQGVLLRGSVGVEAPEATAPALDAAELIGAALTAFATDPE---LLRSE 284

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
               I ++L+D+ Q     Q   +  L      G             GD  QS++ F GA+
Sbjct: 285  RARIRYLLVDDAQHLDP-QAAQLVRLIGTATAG---------TVIAGDPDQSVFGFRGAD 334

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
               +L                   I LP +FR+ AD+ ++  K+ +           +  
Sbjct: 335  SAFLLGLAER---------GDERQIVLPTTFRNNADVASIAAKIAARLPGNL-----AHR 380

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                        G   +     +  +                          A  +A T+
Sbjct: 381  IAVPSDLTDEDPGRASVRVLGTTAKE--------------------------AAVVADTL 414

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                             I   D+ V+VR       +  L R L               L 
Sbjct: 415  RR---------AHLLDGIAWSDMAVIVRSV--PRTLAPLRRALLAAGVPVTTAATELPLA 463

Query: 414  DHLAIKDLMALGRFI-LSQEDDLSFVCMLKSPLFNF-----------------------S 449
                +  L+ + R +   Q      + ++  P+                           
Sbjct: 464  RQHGVSGLLLVLRALGGDQFTGDDALALMAGPIGGAEPVTLRRLRRGLRRVELASGSDRD 523

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLIL 508
              ++ ++     +       + K  +   +    V+  + +    + +     +      
Sbjct: 524  SSELLRLILIDEDRAQSKRLMGKLTDVEAAALNRVLSVLRKARVPLERGLGVEEVLWAAW 583

Query: 509  GAKKGRQQFISR------FGNEVIDVLD---EFLNFTLRNEQNSYSS-LQELISELEQYP 558
             A    +++ +        G++    LD      +           S L   +  L    
Sbjct: 584  QATGLERRWAAASARGGPIGSQADRDLDAVVALFDAAANYVDRLPRSQLAGFVDYLTSQE 643

Query: 559  --PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                 +       + V +++ H A G E  VV +      ++     +   +      D 
Sbjct: 644  IPTDSRSRSVITPDAVTVVSAHAAAGREWAVVAVAGVQEGLWPSLRARGSLLRTEALID- 702

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                 +    S  +  +            E  RL  V  +RA  +L+I    + S +   
Sbjct: 703  -----LVNGVSDGSDSAAERLSRTAPLLAEERRLFLVACSRARRRLLITAVESASGDTDL 757

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK----- 731
                + D +       +         +    +           +   +  +  I      
Sbjct: 758  VPSRFVDELIRGDVYADDPSSDLDVVAPETGDTRVLSLPALVAQLRSVVCDPDIAHFDPE 817

Query: 732  ---------------------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                                              +P+    + P  L+PSTI+      L
Sbjct: 818  KHSRAARQLARLAAAGVRGAHPDQWYGTAEPSTAAPMWQPEDGPVSLSPSTIELLETCPL 877

Query: 771  ESLLSDNQT-------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
              +   +            G ++H L+Q +       +         ++  L      + 
Sbjct: 878  RWVFERHGGSDGDNTHAIAGTLVHTLVQALAGRIPPDQVEKALENAWESIDLGSQWYSRR 937

Query: 824  LLLSITRLLENPMMTTAMSCDSYS----EVSVSGKINCPKKD---IIISGRIDQISIS-Q 875
             L     +L         +    +    EV+V G +   ++    + + GRID++    +
Sbjct: 938  ELNRTREMLATFTAWMNATRGELTEVGVEVAVEGVLEPREEGAPAVKLRGRIDRLERDTE 997

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                + + KT  +             AQL+ Y+
Sbjct: 998  GRPVVVDVKTARNPVSNEAAQS---HAQLAAYQ 1027


>gi|226305705|ref|YP_002765665.1| ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
 gi|226184822|dbj|BAH32926.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
          Length = 1103

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 112/993 (11%), Positives = 252/993 (25%), Gaps = 183/993 (18%)

Query: 9    LNESYELIYKDLWPLPYFQVSDINKYVSLS---METGNPTILKKAQTLQQASQTQCIEER 65
               + E + + +    +  +         +   + TG        + L+           
Sbjct: 108  PQATREPLVRTVHSYAFAVLRLQAAAHGNAPPRLITGAEQDSVLREMLRG-DIEDGALRW 166

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               L                   +N  + +L++ + ++ +    +          K    
Sbjct: 167  PERLRPAL--------------GLNGFAVELRDLMLRANER--GLGPEDLVKLGKKRGRP 210

Query: 126  SLTLAKYLNAHYEEAKKKNC------------VLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                A      YE+                   LD  +LI               +    
Sbjct: 211  EWVAAGRFAEAYEQGVLLRGSVGVEAPEATAPALDAAELIGAALTAFATDPE---LLRSE 267

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
               I H+L+D+ Q       +++R +           +        GD  QS++ F GA+
Sbjct: 268  RARIRHLLVDDAQHLDPQAAQLVRLI----------GTGTAGTVIAGDPDQSVFGFRGAD 317

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
               +L                   I LP+++R+ AD+ ++  K+ +           +  
Sbjct: 318  SAFLLGLAER---------GDERQIVLPVTYRNNADVASIAAKIAARLPGNL-----AHR 363

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                        G   +     +  +                          A  +A T+
Sbjct: 364  IAVPSDLTDENPGRASVRVLGTTAKE--------------------------AAVVADTL 397

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                             I   D+ V+VR       +  L R L               L 
Sbjct: 398  RR---------AHLLDGIAWSDMAVIVRSV--PRTLAPLRRALLAAGVPVTTAATELPLA 446

Query: 414  DHLAIKDLMALGRFI-LSQEDDLSFVCMLKSPLFNF-----------------------S 449
                +  L+ + R +   Q      + ++  P+                           
Sbjct: 447  RQHGVSGLLLVLRALGGDQFTGDDALALMAGPIGGAEPVTLRRLRRGLRRVELASGSDRD 506

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLIL 508
              ++ ++     +       + K  +   +    V+  + +    + +     +      
Sbjct: 507  SSELLRLILIDEDRAQSKRLMGKLTDVEAAALNRVLSVLRKARVPLERGLGVEEVLWAAW 566

Query: 509  GAKKGRQQFISR------FGNEVIDVLD---EFLNFTLRNEQNSYSS-LQELISELEQYP 558
             A    +++ +        G++    LD      +           S L   +  L    
Sbjct: 567  QATGLERRWAAASARGGPIGSQADRDLDAVVALFDAAANYVDRLPRSQLSGFVDYLTSQE 626

Query: 559  --PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                 +       + V +++ H A G E  VV +      ++     +   +      D 
Sbjct: 627  IPTDSRSRSVIAPDAVTVVSAHAAAGREWAVVAVAGVQEGLWPSLRARGSLLRTEALID- 685

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                 +    S  +  +            E  RL  V  +RA  +L+I    + S +   
Sbjct: 686  -----LVNGVSDGSDSAAERLSRTAPLLAEERRLFLVACSRARRRLLITAVESASGDTDL 740

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK----- 731
                + D +       +         +    +           +   +  +  I      
Sbjct: 741  VPSRFVDELIRGDAYSDDPSSDLDVVAPETGDTRVLSLPALVAQLRSVVCDPDIAHFDPE 800

Query: 732  ---------------------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                                              +P+    + P  L+PSTI+      L
Sbjct: 801  KHSRAARQLARLAAAGVRGAHPDQWYGTAEPSTAAPMWQPEDGPVSLSPSTIELLETCPL 860

Query: 771  ESLLSDNQT-------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
              +   +            G ++H L+Q +       +         ++  L      + 
Sbjct: 861  RWVFERHGGSDGDNTHAIAGTLVHTLVQALAGRIPPDQVEKALENAWESIDLGSQWYSRR 920

Query: 824  LLLSITRLLENPMMTTAMSCDSYS----EVSVSGKINCPKKD---IIISGRIDQISIS-Q 875
             L     +L         +    +    EV+V G +   ++    + + GRID++    Q
Sbjct: 921  ELNRTREMLATFTAWMNATRGELTEVGVEVAVEGVLEPREEGAPAVKLRGRIDRLERDTQ 980

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                + + KT  +             AQL+ Y+
Sbjct: 981  GRPVVVDVKTARNPVSNEAAQS---HAQLAAYQ 1010


>gi|116671303|ref|YP_832236.1| UvrD/REP helicase [Arthrobacter sp. FB24]
 gi|116611412|gb|ABK04136.1| UvrD/REP helicase [Arthrobacter sp. FB24]
          Length = 1150

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 111/1009 (11%), Positives = 263/1009 (26%), Gaps = 176/1009 (17%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSME-------TGNPTILKKAQTL 53
            L++RF   LN S        W    F +    K   +          +G    L   + L
Sbjct: 118  LRDRFTARLNRSLSTTPARTWASYAFDLIRRAKAEGILPLPRPPRLLSGPEQDLIIKELL 177

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--R 111
            +  +           L +   T+                    ++++++  D  I+    
Sbjct: 178  EGHTLPGLELPWPDDLGAALETR------------------GFRQEVRQLFDRIIESGRT 219

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN--CVLDFEDLIINTNDLLKKRDVSAWI 169
                     +        A  L A Y +          D   +I     + +    +   
Sbjct: 220  PADLVALAQQCNRPDWIAAAALYAEYRDVLDLRMPEAFDPAGIITAARQIFQD---APEF 276

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                 + +  IL+D++Q+ +   +E++  +              +  +        +  F
Sbjct: 277  LAAERERLQLILVDDIQEANPAVFELLADIAA-----------GKDAYVAFSPDTVVQGF 325

Query: 230  HGAEPKRVLREKRIN---------QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
             GA P        +           + A   G       L  + R T  +      V   
Sbjct: 326  RGARPDLTAELPHLLAPADATGRSPRDAAAPGTALER-PLWRTHRHTPAVAQAWLSVAGR 384

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                 G             S   + G V     V          +               
Sbjct: 385  ISQRAGSQSARRLESAEPPSNRPESGAVPACGGVEGHILPSPVQEL-------------- 430

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                  R +A  I                  +  DI V+VR            +     +
Sbjct: 431  ------RYVAQRI---------LDAHLNDRRELGDIAVIVRNGGQLN----QLQRHLAGH 471

Query: 401  KISVVGNDRFI-LTDHLAIKDLMALGRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKIC 457
             I V        + D +A++ L+      L        + V +L S +   +  ++ ++ 
Sbjct: 472  GIPVRVPVAESAVRDEVAVRPLLDAYAVALDPAVLTPEAAVALLTSRIGGATSIELRRLR 531

Query: 458  TQRHETETVYEYIQKFANCGISKF----------------QHVIKYIHELIH--IAQFCS 499
                  E +    +      +                   + V + I        A   +
Sbjct: 532  QSLRREEILGGGGRTSDALLVESLLEPGALATTGIEGRSARRVARMIEAGREAARAPGAN 591

Query: 500  PHDFFTLILGAKKGRQQFISRFGNEVI---------DVLDEFLNFTLRN-EQNSYSSLQE 549
                   +  +     ++                  D +    +   R  +Q   S   +
Sbjct: 592  AETVLWALWNSTGLAARWTDAALAGGAAGARADRDLDAMMALFHTAERYVDQLPGSGPDQ 651

Query: 550  LISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             +  L  ++ P     A +   + V +MT  +A G E PVV +      V+ +  ++   
Sbjct: 652  FLEYLLSQELPMDTLAARAQLEDAVELMTPASAAGREWPVVIIAGLQEGVWPNTRLRGEL 711

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +                    ++ +        +  + +  R     ++RA + LI    
Sbjct: 712  L-------GSTLFADAVEHGVDHALQLGPISRLREIRYDELRSFSTAVSRARELLICTAV 764

Query: 668  SNTSNEKKSNQRTWYDMV-----YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            S+   +  S       +            +  +    L   + +   +   ++    E  
Sbjct: 765  SSEDEQPSSFLDYVAPLHPGQDRRTFTPVERPMTLRALVAELRQHAQLDGRFAAESVEAA 824

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEP-------YILNPSTIDTKGKTNLES--- 772
             +       +       P   +        E          ++PS +++  K+ L+    
Sbjct: 825  RVLARLAAAEPSVPGAHPDSWWGLAALSSEERIVPPGGTVFVSPSKVESVQKSPLDWFIQ 884

Query: 773  ----LLSDNQTFNRGLIIHKLLQVIFTLPEHK------RKNFITSYCTKNAKLWPAKEYK 822
                  + +   + G ++H + Q +      +      R+                +  +
Sbjct: 885  AVGGEAATDFARSLGTLVHAIAQDLPDASGSEYLVELVRRWPALGMKDNWEGKLDFQRAE 944

Query: 823  NLLLSITRL-------------------LENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
             ++  + +                    ++ P +      ++   V  +       +  +
Sbjct: 945  GMVRKLAQYVLVMRSEGRSLVGVERDFEVKLPDIVDIPQPETL--VPAATDAEPEVRSAV 1002

Query: 864  ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            + G++D++ I  +  + I + KT    P + +        QL  Y+  +
Sbjct: 1003 LRGQVDRLEIDAEGRLVIVDLKTGKRQPSKADLAR---HPQLGAYQAAV 1048


>gi|293606508|ref|ZP_06688866.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter
           piechaudii ATCC 43553]
 gi|292815131|gb|EFF74254.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter
           piechaudii ATCC 43553]
          Length = 699

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 106/736 (14%), Positives = 205/736 (27%), Gaps = 131/736 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    ++     + + +  L   Q +    +       G   +   A    L +A    
Sbjct: 78  RRAAQEMDRRVGSVLQRVMNLRGSQQAPSLPWAGTFHAIGARLLRDCALRIGLSEAFTIH 137

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              +   L+      Q  +  K+     +      +  ++  SQ     +      +   
Sbjct: 138 DRGDAEDLMGMVRHEQGLSSTKSRFP--LKGTCLAIYSRVINSQSPVADVLKTSFPWCAQ 195

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                     K L   Y  AK+   VLD++DL++  ++++    ++A +        +H+
Sbjct: 196 WEDE-----LKTLFRGYVAAKQDQQVLDYDDLLLYWSEMMTDPGIAADV----GARFDHV 246

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++ ++              R L  VGD+ QSIYSF  A  + +L  
Sbjct: 247 LVDEYQDTNRLQSAILLAM----------KPDGRGLTVVGDDAQSIYSFRAATVRNILDF 296

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                K          +I L  ++RST  ILT  + V  +                    
Sbjct: 297 PAQFPK-------PARVITLDRNYRSTQPILTASNAVIGLATERFAK------------- 336

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW    S    +                  S  +  AR +A  +       
Sbjct: 337 --------DLWTDRASSQLPELVTV--------------SDEAGQARWVADQVLAQREGG 374

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                        K    L R    +  +            I  V        +   +KD
Sbjct: 375 ATL----------KSQAALFRTSSHSAALELEL----TRRNIPFVKFGGLRFLEAAHVKD 420

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN--CGI 478
           L++L R+  +    ++   + +            K+      +      +++F       
Sbjct: 421 LLSLLRWAENPRGRMAGFRVAQLMP-GIGPATAGKLMDAMAASPEPLRALREFKPGAAAQ 479

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            ++         L              L L    G+ + +          LD+ +     
Sbjct: 480 QEWGAFADTYAALCD--PGLRWPADVDLALRWYAGQLERLYDDARVRKTDLDQLVRLAAG 537

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
                  + +  ++EL   PP      S     + + + + T+H+AKG E   V++++  
Sbjct: 538 Y-----PTRERFLTELTLDPPDATSDESGAPSRDEDYMILSTIHSAKGQEWKAVYVLNVV 592

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                             EE  RLLYV 
Sbjct: 593 DGCIPSDMSTGT----------------------------------AEEIEEERRLLYVA 618

Query: 655 MTRASDQLIICKHS----NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           MTRA ++L +        +                Y +       + +    ++      
Sbjct: 619 MTRAKERLQLIVPQRFYVHQQTGMGDRHVYGSRTRYITNAMLPLFEHLPRPPALADLPVG 678

Query: 711 AYEWSTHHPENTPLER 726
                   P      R
Sbjct: 679 GQPKEPQAPAIDVTRR 694


>gi|299069674|emb|CBJ40950.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum CMR15]
          Length = 710

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 97/710 (13%), Positives = 199/710 (28%), Gaps = 110/710 (15%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R    L+     +            S        ++          A+ L++ ++   +
Sbjct: 81  RRAASELSSRAGHLLARALQGSAGARSAAGTAYRTALPWAGTFHGIGARLLREYAERIGL 140

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE-FIKIRDRFNTYKMFK 121
              F++             ++ +     ++   LK+                    K   
Sbjct: 141 APDFTIHDRSDAADLLNVVRHELNLSTKERRFPLKQTCLAIYSRAINAESPLDAVLKQHF 200

Query: 122 STLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              A      + L   Y EAK+   +LD++DL++  + ++   D++A I        +HI
Sbjct: 201 PWCAMWQAQLRTLFDAYVEAKQAQHILDYDDLLLYWHAMVADADLAAEI----GARFDHI 256

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++R+L              R L  VGD+ QSIY+F  A  + +L  
Sbjct: 257 LVDEYQDTNRLQSSILRAL----------RPDGRGLTVVGDDAQSIYAFRAATVRNILDF 306

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            R   +           + L  ++RST  IL   + V          +  +     HR  
Sbjct: 307 PRHFTR-------PAHTVLLERNYRSTQPILEASNGVMRFATERFAKTLWTDRASTHRP- 358

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                              L      +  AR +A  +       
Sbjct: 359 ----------------------------------RLISVRDEAEQARCVAEQVLRHREGG 384

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +  K   VL R    +  +            I  V        +   +KD
Sbjct: 385 ----------LALKSQAVLFRTASHSAPLEIEL----TRRNIPFVKYGGLKFLEAAHVKD 430

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           ++++ R+  +  + ++   +++  L         ++     E       +          
Sbjct: 431 VLSVLRWAENPRNRIAGFRVIQ-LLPGAGPATAARVLDAMAEAADPVAALLAHVPPARLA 489

Query: 481 --FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +  ++  +  L       +       +        + +          LD+       
Sbjct: 490 GDWAALMTLMATLRTPKDNAAWAGELEAVGAWYAPHMERLHDDAAVRQGDLDQLARMAAT 549

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                   L E+  +  +           + + + + T+H++KG E   V+L++      
Sbjct: 550 YASRE-RFLTEMTLDPPELTSDESGEPYRDEDYLILSTIHSSKGQEWKAVYLLNAVDGCM 608

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                +        EE  RLLYV MTRA
Sbjct: 609 P----------------------------------ADLGAGSHDELEEERRLLYVAMTRA 634

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            D L I         +++     +     +      +  +    +    E
Sbjct: 635 RDHLDILVPQRFYMTQQTPNGDRHLYASRTRFIPPALLPLFEACAWPPPE 684


>gi|242309299|ref|ZP_04808454.1| helicase [Helicobacter pullorum MIT 98-5489]
 gi|239524340|gb|EEQ64206.1| helicase [Helicobacter pullorum MIT 98-5489]
          Length = 921

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 130/933 (13%), Positives = 273/933 (29%), Gaps = 190/933 (20%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
           +S       L  L      ++  ++  + E      ++ A+ +Q A+      E  S L 
Sbjct: 168 DSVISFCDFLDSLKEMLEKEL--FIYPTKEGYKQQAMEYARRIQ-ATYQDAKGEIHSALE 224

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE--FIKIRDRFNTYKMFKSTLASLT 128
              +       K  +T+E  +      +   + +D     +           K       
Sbjct: 225 FDDIESLLQKGKTWLTKERLQDYRGFSKIPFRDEDFMGLKEALVGVFVEDEAKYLENLYG 284

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQD 187
           +        +E  K+   L F  +     +LL +K+    ++ +++D  I+HILIDE QD
Sbjct: 285 IFVLYLKAKQEYYKQTNTLSFNAVTSKVYELLLQKQIDKNFLYFRLDSTISHILIDEFQD 344

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS++Q+E+++ + ++   G+      R+ F VGD KQSIY F G   +      +  Q+ 
Sbjct: 345 TSVLQYEILKPMIDEIKSGEGAKRFLRSFFYVGDIKQSIYRFRGGNSELFKIAAQGMQEE 404

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                       L +++RS  +I+  V++ FS                            
Sbjct: 405 -----------SLKINYRSAKNIVEFVNETFSN--------------------------- 426

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                ++      + N + + +   +    +   +     ++  +I  ++          
Sbjct: 427 -----KIEGFVPQESNSKIKGFVQVYIQEKEAILS-----QVTTSIRELLEIGAKEE--- 473

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  +I +L         I    +         VV +    L  H  ++ L+   ++
Sbjct: 474 -------EIAILTFDNDCVVEIAEFLQEE----GFKVVVDTSAKLIFHNEVRALIEFLKY 522

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
           +           + ++P F      +  +     E E + +Y              +++ 
Sbjct: 523 L-----------VFENPKFCAEFFMLLGL-----EKENLEQYFYLKTQKPSKVLLEIMQ- 565

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
                +     S   F    L                    ++E L      + +  SS 
Sbjct: 566 ----RYKIASLSAKKFLEYSLEYLS----------------IEELLEKVESLQSDIVSS- 604

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
                               +   +RIMT+H +KGLE   V ++D         ++    
Sbjct: 605 --------------------DFFGIRIMTIHKSKGLEFNNVLVIDDIRAKNRSGNVFFEF 644

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
               +                +      +       +++    LYV +TRA + + I   
Sbjct: 645 KENGVEIKRIFWRSNELRMQIDKEYQKALLKENILKEKDLKNQLYVALTRAKNTMQII-- 702

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
               ++K   +     ++                                  E      E
Sbjct: 703 --LLDQKSRFESLGLQLMQKG-------------------------------ELKQAILE 729

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
                L D     K       N  +   +     +    K   E L+ +      G+ +H
Sbjct: 730 IKSANLEDSLTQNKDFECFAHNQKSLESLGRQKQMQIAQK---EDLIGEVGAIYYGIALH 786

Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SY 846
            +++             +T    K       K  + ++     LL +      M      
Sbjct: 787 FVMEQKIKNQLEDSL-ILTLLLNKMGFYIEKKILEKIINHCKILLNHSSFIEIMGKGKVK 845

Query: 847 SEVSVSGKINCPKKDIIISG---RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            EV             +I+G   R+D + I     F+ +YK+              +  Q
Sbjct: 846 CEVPF-----------LINGRQKRLDLLIIGDNEAFVIDYKSG--------MQREIYKMQ 886

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSE-PKVFII 935
           +  Y + +      K     + Y     K+  +
Sbjct: 887 VLEYMQSVNLIL-QKPTYGFIFYTEGEGKLVEV 918


>gi|17549495|ref|NP_522835.1| ATP-dependent DNA helicase II protein [Ralstonia solanacearum
           GMI1000]
 gi|17431748|emb|CAD18427.1| probable atp-dependent dna helicase II protein [Ralstonia
           solanacearum GMI1000]
          Length = 710

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 95/709 (13%), Positives = 195/709 (27%), Gaps = 108/709 (15%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R    L+     +            S        ++          A+ L++ ++   +
Sbjct: 81  RRAASELSSRAGHLLARALQGSAGARSAAGTAYRTALPWAGTFHGIGARLLREYAERIGL 140

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE-FIKIRDRFNTYKMFK 121
              F++             ++ +     ++   LK+                    K   
Sbjct: 141 APDFTIHDRSDAADLLNVVRHELNLSTKERRFPLKQTCLAIYSRAINAESPLDAVLKQHF 200

Query: 122 STLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              A      + L   Y EAK+   +LD++DL++  + ++    ++A I        +HI
Sbjct: 201 PWCAMWQAQLRTLFDAYVEAKQAQHILDYDDLLLYWHAMVADAGLAAEI----GARFDHI 256

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++R+L              R L  VGD+ QSIY+F  A  + +L  
Sbjct: 257 LVDEYQDTNRLQSSILRAL----------RPDGRGLTVVGDDAQSIYAFRAATVRNILDF 306

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            R   +           + L  ++RST  IL   + V          +  +     HR  
Sbjct: 307 PRHFTR-------PAHTVLLERNYRSTQPILEASNGVMRFATERFAKTLWTDRASTHRP- 358

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                              L      +  AR +A  +       
Sbjct: 359 ----------------------------------RLISVRDEAEQARCVAEQVLRHREGG 384

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +  K   VL R    +  +            I  V        +   +KD
Sbjct: 385 ----------LALKSQAVLFRTASHSAPLEIEL----ARRNIPFVKYGGLKFLEAAHVKD 430

Query: 421 LMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           ++++ R+  +  + ++   +++  P    +                              
Sbjct: 431 VLSVLRWAENPRNRIAGFRVIQLLPGAGPATAARVLDTMAEAADPVAALLAHAPPARLAG 490

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            +  ++  +  L       +       +        + +          LD+        
Sbjct: 491 DWAALMTLMATLRAPKDNATWAGELEAVGAWYAPHMERLHDDAAVRQGDLDQLARMAATY 550

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                  L E+  +  +           + + + + T+H++KG E   V+L++       
Sbjct: 551 ASRE-RFLTEMTLDPPELTSDESGEPYRDEDYLILSTIHSSKGQEWKAVYLLNAVDGCMP 609

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                               +        EE  RLLYV MTRA 
Sbjct: 610 ----------------------------------ADLGAGSHDELEEERRLLYVAMTRAR 635

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           D L I         +++     +     +      +  +    +    E
Sbjct: 636 DHLDILVPQRFYMTQQTPNGDRHLYASRTRFIPPALLPLFEACAWPPPE 684


>gi|219556815|ref|ZP_03535891.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
 gi|289568920|ref|ZP_06449147.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
 gi|289542674|gb|EFD46322.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
          Length = 422

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 117/419 (27%), Gaps = 75/419 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +      +              +            + L         ++   
Sbjct: 79  AAAEMRERVV---GLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K    + +     +LK +L         + +          +    
Sbjct: 136 LLQMVGRDLGLDI-KRYSPRLLANAISNLKNELIDPHQALAGLTED---------SDDLA 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   +    LDF+DLI  T  +L+       I     +   H+L+DE QD
Sbjct: 186 RAVASVYDEYQRRLRAANALDFDDLIGETVAVLQ---AFPQIAQYYRRRFRHVLVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+ ++R L        N    P  L  VGD  QSIY+F GA  + +   +R     
Sbjct: 243 TNHAQYVLVRELVGRDS---NDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYP-- 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST +IL+  + V +     +                      
Sbjct: 298 ------DTRTILLEQNYRSTQNILSAANSVIARNAGRREKR------------------- 332

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             LW             +        +   +       AR +A  I  +           
Sbjct: 333 --LW-------TDAGAGELIVGYVADNEHDE-------ARFVAEEIDALAEGSE------ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              I   D+ V  R    +  +  +         I           +   I+D++A  R
Sbjct: 371 ---ITYNDVAVFYRTNNSSRSLEEVL----IRAGIPYKVVGGVRFYERKEIRDIVAYLR 422


>gi|146337792|ref|YP_001202840.1| putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278]
 gi|146190598|emb|CAL74600.1| Putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278]
          Length = 686

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 103/671 (15%), Positives = 202/671 (30%), Gaps = 131/671 (19%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    ++   E I + +       ++    +       G   + + A+   L       
Sbjct: 71  RRAASEMSRRVERIARKVLGGQAEAITAGLTWAGTFHGLGARMLREYAERIGLDPVFTIH 130

Query: 61  CIEERFSLLSSFFLTQKFT-PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++     +  +  Q+   T+        +  +   +     +   R   +  
Sbjct: 131 DREDSADLMNLVRHERGLSNTQRRFPTKGT---CLAIYSRCVNADMPLDEALVRHFPW-- 185

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                      K L A Y EAK+ N VLD++DL++    ++    ++  I     +  +H
Sbjct: 186 ---CAEWAGELKGLFAAYVEAKQANAVLDYDDLLLYWAQMMADETIAREI----GERFDH 238

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q +++                   L  VGD+ QSIY+F  A  + +L 
Sbjct: 239 VLVDEYQDTNRLQSQIL----------LGLKPDGAGLTVVGDDAQSIYAFRAATVRNILE 288

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  RA        I+ L  ++RST  IL+  + V  +       +  +  T   + 
Sbjct: 289 FPDQFSPRAD-------IVTLDRNYRSTQPILSAANAVIGLARERFTKNLWTDRTASRKP 341

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                               L      +  AR I   +      
Sbjct: 342 -----------------------------------QLVTVRDETDQARYIVEQVLAKREE 366

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             +           K   VL R    +  +            I  V        D   +K
Sbjct: 367 GIVL----------KQQAVLFRTSSHSGPLEIEL----TRRNIPFVKFGGLKFLDAAHVK 412

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
           D++A  RF+ +  D ++   +L   +         ++     E+      +         
Sbjct: 413 DMLACLRFVENPRDRIAGFRVLH-LIPGIGPASAQRLLDAISESADPLRTLCAQPTPARA 471

Query: 479 -SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
              +   ++ + +L               I    +   + +          L +      
Sbjct: 472 GEDWTAFVRTLEQLRSSDWPAD----IERIRHWYQPHLERVHEDAEMRSADLLQLEQIA- 526

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDT 593
               + Y+S +  ++EL   PP      +     + + + + T+H+AKG+E   V +++ 
Sbjct: 527 ----SGYASRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGMEWNAVHVLNV 582

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                                                     +     +  EE  RLLYV
Sbjct: 583 VDGCMPSD----------------------------------LGAGSTAELEEERRLLYV 608

Query: 654 GMTRASDQLII 664
            MTRA D L +
Sbjct: 609 AMTRAKDDLHL 619


>gi|257464157|ref|ZP_05628538.1| DNA helicase II [Fusobacterium sp. D12]
 gi|317061673|ref|ZP_07926158.1| DNA helicase II [Fusobacterium sp. D12]
 gi|313687349|gb|EFS24184.1| DNA helicase II [Fusobacterium sp. D12]
          Length = 901

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 107/841 (12%), Positives = 242/841 (28%), Gaps = 164/841 (19%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           +   K     Y+   +K   + F  + +     L +          I   I +++IDE Q
Sbjct: 176 IQFLKAAYELYQSLLRKENKISFSAIQMELYHALLEHPE---FLETIQNRIRYLMIDEYQ 232

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D++ IQ  +I  L              + +  VGDE Q+IY F GA  + +LR  ++ ++
Sbjct: 233 DSNPIQERIILLLAG----------KEKNICVVGDEDQAIYRFRGASVENILRFPQVFEE 282

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + L  ++RST +I+ + ++     E      +    + R+ S     V 
Sbjct: 283 D-------CETVYLEKNYRSTEEIVHLCNQWMKRIEWQGERFDKQMYSARYESIERKSVF 335

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            +        + +                             +   +  +I    +    
Sbjct: 336 RISGSPHPRKRKE-----------------------------LISWLQELIKRKKVED-- 364

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    I+ L    +   +             I V             +K    +  
Sbjct: 365 ------YSQIVFLFDNFRSPQV--KRLEEDLEMAGIPVYCPRARNFFSREEVKLFFGIFL 416

Query: 427 FILSQEDD------LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            +  +  +          C+ ++  +     ++ K   ++ + E      + +     S 
Sbjct: 417 ALSPEVQEEVKNYSYYEDCLFRARKWAKENIELQKWILEKRKRELEDFLTEYYEILSFSP 476

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
           F+ +++   E    A+          ++   +           +  + L  F        
Sbjct: 477 FREILEKQEENPRKAREIYNLSLIGKMIQGFQKLCHMKEESEIKKPEYLKYFFQ------ 530

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                    L   +E+     ++        +  +T+H +KGLE P+V +          
Sbjct: 531 -------SYLKKFIEKGVNEFEKKGEFPKGCIPFLTIHQSKGLEFPIVIVSSLYQN---- 579

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                          P I     +    +      +         ++ R  YV  +RA +
Sbjct: 580 ---------------PPIYREKIRKSYDSLFQKKKLLQEHNEELYDFYRKFYVAFSRAKN 624

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            L+   +            ++  +V  S                       ++W     E
Sbjct: 625 ALVFLDYD--------VSSSFQALVRHSVEISSD----------------HFQWEDILEE 660

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
                 E        +  +                 ++  +I+ +               
Sbjct: 661 KYSTSEETASYSYTTDIALYDLCPRKYFFL----RKISFPSIEKEK-------------M 703

Query: 781 NRGLIIHKLLQVIFTLP--EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
             G ++H+ L+ +      ++  +  +T       K       K  L     +LE     
Sbjct: 704 LFGNLLHRCLEKMHKYEKYKNGIEILLTKEKENLEKRSKFSFQKEELEKAKAILE----- 758

Query: 839 TAMSCDSYSEVSVSGKINCPKKDII------ISGRIDQISISQQNIFIFEYKTHHHVPQE 892
                   SE+     +   +K+ +      + G ID ++   +   I ++KT    P  
Sbjct: 759 ---EYREKSEMLYENILQAERKEFLEWRGSMLYGEIDLLAFQGEQWKIIDFKTGTENPM- 814

Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV--FIIPQNKLNKAFAEISTK 950
                  +I QL +Y+++LK     + ++  L Y+ E +     +   +  K   +I + 
Sbjct: 815 -------YIEQLVLYQELLKKYQKGQDVLLSLYYLLEQREEKIELSLEEREKILDKIQST 867

Query: 951 I 951
           I
Sbjct: 868 I 868


>gi|269302528|gb|ACZ32628.1| exodeoxyribonuclease V, beta subunit [Chlamydophila pneumoniae
            LPCoLN]
          Length = 1050

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 120/834 (14%), Positives = 241/834 (28%), Gaps = 161/834 (19%)

Query: 126  SLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               +   L    +E  K+N    L  ++  +   + L     +  +   + ++   +LID
Sbjct: 316  LDRIFNTLLVDLQEYLKQNYTPWLSPDE-SVFALEKLLSSSEAQPVVQALREQYQLVLID 374

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT   QW +  +L         +     +LF +GD KQSIY +  A+    L+ K  
Sbjct: 375  EFQDTDKQQWSIFSNLF-------ISPKFTGSLFLIGDPKQSIYEWRNADLPTYLKAKSS 427

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              +           ++L  ++RST  ++  ++++F        +                
Sbjct: 428  FSED--------KQLQLVNNYRSTPKLMEAINQIFGKISPFLEI---------------- 463

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G + +    ++   S+          +F            A  I      +       
Sbjct: 464  -PGYLPIEYHALNPQSSETFENPPHAPIHFFFYET---IKDQALWIFSEALRLQKEQ--- 516

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL-M 422
                   I   +++VLV               L +   I V  +    +        L  
Sbjct: 517  ------KIPLGNMVVLVSDSNQAF-------ELISYATIPVSFSKNKSIFHLTETHILTT 563

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            AL   IL  E+      +L S LF  S D++      + E  T+Y               
Sbjct: 564  ALLEAILHPENYEKISKILFSSLFGLSLDEVTT----KKEDFTIYFQSLHSYILHHGLLA 619

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
               + +    ++       D     +    G                   L+       +
Sbjct: 620  TFYRVMTTQGNVLFSSPRGDLIFQEMEKLCGY------------------LDTISSYPYH 661

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                L+               ++S +   ++I T+H++KGLE  +VF             
Sbjct: 662  QLLHLKNFSETGRWEEELAISSYSEDLETLKITTIHSSKGLEYDIVFCPG---------- 711

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                            + K  K  +  E  R +YV  TRA  QL
Sbjct: 712  --------------------------------IEKSKKNKSSSELLREMYVACTRAKKQL 739

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHN------DERVKKIKLTNSINKDEWIAYEWST 716
             +   +   + ++S+  T Y  +  +  +          +   L +     +        
Sbjct: 740  YLPISTQPPSLQRSSALTNYVKLEGTQSSAYDLAIHLHQEHPDLFSYSLPKDHGHATTVL 799

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
            + P       + T  + +      K L    K+  + PY   P +               
Sbjct: 800  NLPLLETFALKVTPPKTIFSFSSTKFLLDTHKDSQSIPYSKLPISKQQL----------- 848

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                  G++IHK+L+ I        +  +    +   +       +    +I +LL    
Sbjct: 849  PLGEKTGILIHKILESIQFSLLQDTEYLM----STIMRFIKHTHLEGFEETILKLLSKTF 904

Query: 837  MTTA-MSCDSYS-------EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +    S  ++S       ++         +   +  G ID     +   +I ++KT   
Sbjct: 905  FSPLTFSSQTFSLSQVLPNKIFRETSFLFLENQELWQGVIDLFFEHEGKYYIIDWKTSFL 964

Query: 889  VPQEIEHIP---------YTHIAQLSIYEKILKDSYP----NKSLVCLLIYVSE 929
                 E+                Q  IY K ++        +  +   +I++  
Sbjct: 965  GETNSEYSKSNLSIYIKQEKLDYQGRIYVKAVRKFLNQFEIDDDVELGVIFIRG 1018


>gi|300697919|ref|YP_003748580.1| atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum CFBP2957]
 gi|299074643|emb|CBJ54200.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum CFBP2957]
          Length = 710

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 100/712 (14%), Positives = 195/712 (27%), Gaps = 114/712 (16%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R    L+     +            S        ++          A+ L++ +    +
Sbjct: 81  RRAASELSSRAGHLLARAMQGNTGTRSAAGTTYQTALPWAGTFHGIGARLLREYADRIGL 140

Query: 63  EERF---SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
              F       S  L      + N+ T+            +                 K 
Sbjct: 141 APDFTIHDRSDSADLLNVVRHELNLSTKARRFPLKQTCLAIYS--RAINAESPLDAVLKQ 198

Query: 120 FKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                A      + L   Y EAK+   VLD++DL++  + ++    ++A I        +
Sbjct: 199 HFPWCAMWQAQLRTLFDAYVEAKQAQHVLDYDDLLLYWHAMVSDAGLAAEI----GARFD 254

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HIL+DE QDT+ +Q  ++R+L              R L  VGD+ QSIY+F  A  + +L
Sbjct: 255 HILVDEYQDTNRLQATILRAL----------RPDGRGLTVVGDDAQSIYAFRAATVRNIL 304

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              R   +           + L  ++RST  IL   + V          +  +     HR
Sbjct: 305 DFPRHFTR-------PARTVLLERNYRSTQPILDASNGVMRFATERFAKTLWTDRVSTHR 357

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                                L      +  AR +A  +     
Sbjct: 358 P-----------------------------------RLVSVRDEAEQARCVAEQVLQHRE 382

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                       +  K   VL R    +  +            I  V        +   +
Sbjct: 383 GG----------LALKSQAVLFRTASHSAPLEIEL----TRRNIPFVKYGGLKFLEASHV 428

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           KD++++ R+  +  + ++   +++  L         ++     E       +        
Sbjct: 429 KDVLSVLRWAENPRNRIAGFRVIQ-LLPGAGPATAARVLDAMAEAADPIAALLAHEPPAR 487

Query: 479 SK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
               +  ++  +  L       +       I        + +          LD+     
Sbjct: 488 LAGDWAALMTLMATLRTPKDNAAWAGELQAIGAWYAPHLERLHDDAAVRQGDLDQLARMA 547

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                     L E+  +  +           + + + + T+H++KG E   V+L++    
Sbjct: 548 ATYASRE-RFLTEMTLDPPELTSDESGDPYRDEDYLILSTIHSSKGQEWKAVYLLNAVDG 606

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                                                  +        EE  RLLYV MT
Sbjct: 607 CMP----------------------------------ADLGAGSHDELEEERRLLYVAMT 632

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           RA D L I         +++     +     +      +  +    +    E
Sbjct: 633 RARDHLDILVPQRFYVTQQTPNGDRHIYASRTRFIPPALLPLFEACAWPPPE 684


>gi|298241785|ref|ZP_06965592.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297554839|gb|EFH88703.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 765

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 109/767 (14%), Positives = 210/767 (27%), Gaps = 170/767 (22%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            + + +      +   +   +  +  L        +  K Q L Q   +    +  +   
Sbjct: 89  RALKSLKARGLLIKDLKALRVVTFHGLGHVMLREKLQLKPQELNQRLISGDPRQWLAE-- 146

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
                    P ++  ++ +N +  ++ + L        ++     +   F+  L  +   
Sbjct: 147 -----DIVRPWRSDRSRGMNWEV-NITDVLAAVDRAKEELIQPEQSQDFFRRHLGLMPEL 200

Query: 131 K----YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     YE+ K+K  + D  DLI     LL+        R        ++ IDE Q
Sbjct: 201 AVRYQEFFERYEQTKQKEKLYDLSDLIYIPLLLLESSP---KFRKTWQNRYQYLQIDETQ 257

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DTS  Q+++I+ L                +  VGD  Q+IY F GA P+  +        
Sbjct: 258 DTSPSQYKLIQYLAA----------PRHNVVVVGDPDQAIYQFRGASPEASIL------- 300

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
              +   K  I  +  ++RST  IL   + + S  +   G  +    T+       G   
Sbjct: 301 SFKSMYPKGKIYRIEHNYRSTPQILEAANTLISKNDITPGFEKVLRPTLP-----SGAPV 355

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V  +                                  A  +A  I  +        + 
Sbjct: 356 LVTAYP----------------------------DQESEADGVATRIEELARAWRTQQDK 387

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +  +DI VL R       +          + I                +D++A   
Sbjct: 388 ----LSYRDIFVLARTNYHLANLEIAL----ARHHIPYRTVGGSSFFKRKTTRDILAFLT 439

Query: 427 FIL---------------SQ-------------EDDLSFVCMLKSPLFNFSED------- 451
            +                +              E + +F  +   P   +          
Sbjct: 440 LVDGMRIYQDFLASRQTPNPRRREDVLTPVHCGEQNAAFRVVANIPSREYFTRTGKISHR 499

Query: 452 ---DIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDFF 504
                +   +     + + ++ ++ A    S+FQ      +  I  + +           
Sbjct: 500 FTPTFYGTLSSFASGQPLLQFCEEQAYTIASEFQLGVKDFVGLIQRISNKCHNRPAEAI- 558

Query: 505 TLILGAKKGRQQFISRFGNE---------------------VIDVLDEFLNFTLRNEQNS 543
             +L         +                             D L+E      R+    
Sbjct: 559 -KLLREYAYDTHLLHYDSRHKENADEDEETPKPREEVKLEGRFDELEELTEIAQRH---- 613

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +++  +  + Q     + +     + V +MTVH +KGLE+PVVF++     +F HK  
Sbjct: 614 -HTIRHFLQAMAQLKEQAEDSSKNKRDCVSLMTVHKSKGLEAPVVFVMGMTESIFPHKRS 672

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
             M     +                                 E  RL YV  TRA   L 
Sbjct: 673 FTMTEDGPIETSG---------------------------IAEERRLAYVAYTRAQHLLF 705

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           +              R  Y+        D  +    +T   +  E  
Sbjct: 706 LTSLLRYRGSDAQASRFIYEAGLKPTDEDGILNPYLMTRDGDPREQP 752


>gi|94309177|ref|YP_582387.1| UvrD/REP helicase [Cupriavidus metallidurans CH34]
 gi|93353029|gb|ABF07118.1| putative ATP-dependent DNA helicase [Cupriavidus metallidurans
           CH34]
          Length = 702

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 101/671 (15%), Positives = 190/671 (28%), Gaps = 119/671 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA--SQTQ 60
            R    +    E I      +         ++       G   + + A+TL  A      
Sbjct: 82  RRAASEMGRRVERIVDQALGIQTGAGRAALQWSGTFHAIGARLLREYAETLGLAPTFTIS 141

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              +   L+         + Q +   ++  +    +  ++  +Q     +         F
Sbjct: 142 DRGDAADLMHVVRHDLGLSEQTSRFPRK--ETCLAIYSRVVNTQLPLEVVLKT-----QF 194

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                     K L A Y EAK+K  VLD++DL++     + +  ++      +    +H+
Sbjct: 195 PRYAMWADALKGLFAAYVEAKQKQQVLDYDDLLLYWAQAMTEPALAQD----MGARFDHV 250

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIY+F GA  + +L  
Sbjct: 251 LVDEYQDTNALQASILLAL----------KPQGRGLTVVGDDAQSIYAFRGATVRNILDF 300

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            + L  ++RST  IL   + V  +                    
Sbjct: 301 PTQFS-------PPAEQVTLSQNYRSTQPILGAANAVIGLAAERFTK------------- 340

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                    LW    S                       +  +  AR +   +       
Sbjct: 341 --------DLWSLRESAEKPGVVVV--------------NDEAEQARFVVEQVLARREAG 378

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +      VL R    +  +            I  V        +   +KD
Sbjct: 379 ----------LSLTQQAVLFRAADHSAQVEIEL----ARRNIPFVKFGGLKFLESTHVKD 424

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHETETVYEYIQKFANCGI 478
           +MA+ R++ +  D ++    L+  L         ++    +      +     +      
Sbjct: 425 VMAVVRWLENPRDRMAGFRTLQ-LLPGIGPKTAARVLEGLEAATEPLIALEAFEPPPAAA 483

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             +  ++     L  +A        F  ++       + +          L +       
Sbjct: 484 PAWDELVTLARAL--MAPTSPWPSEFEQVIAWYMPHLERMHDDAAARQADLQQIERIAAT 541

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                   L EL  +            S + + + + T+H+AKG E   V++++      
Sbjct: 542 YASRE-RFLTELTLDPPSASSDESGVPSRDEDYLILSTIHSAKGQEWKAVYVLNAVDGCM 600

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                +        EE  RLLYV MTRA
Sbjct: 601 PSD----------------------------------LATGTTEEIEEERRLLYVAMTRA 626

Query: 659 SDQLIICKHSN 669
            D L I     
Sbjct: 627 RDHLDIVVPQR 637


>gi|220928112|ref|YP_002505021.1| UvrD/REP helicase [Clostridium cellulolyticum H10]
 gi|219998440|gb|ACL75041.1| UvrD/REP helicase [Clostridium cellulolyticum H10]
          Length = 708

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 95/564 (16%), Positives = 182/564 (32%), Gaps = 110/564 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE KK+N ++DF+D++     +L +      I     +   +I +DE QD S IQ
Sbjct: 189 VYRAYEEHKKQNLMIDFDDMLTYAYSILSRFP---QILDWYKKRYTYIQVDEGQDLSNIQ 245

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +++ L+               +F V D+ QSIY F GAEP+ +L              
Sbjct: 246 FAILKLLSG----------PDGNIFIVADDDQSIYRFRGAEPQYILDMSSEFNN------ 289

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +  L  ++RS+ +I+ +  K     +     S  +         R           
Sbjct: 290 --LKLFRLENNYRSSLNIVDLTSKFIMKNDKRYLKSHKTKNK------RADDP------- 334

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            ++S  +                             +   IS ++  +   S        
Sbjct: 335 FILSVENESGQSDI----------------------VLKKISELLTGNRSIS-------- 364

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I +L R    + L+    +     ++I     +R     H  ++++ A   F L   
Sbjct: 365 ---IGILYRNNLSSILVADKLQRNSISFRIR---QNRLFFFRHWLVQEVCAFLMFSLDGY 418

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D  SF  +        S+  +        E + V + I    +    +   +     E  
Sbjct: 419 DTESFTKICFRMNRFISKTMLECALQG-EERDNVIDRIINNHDLKPFQLTAMRDLKGEFA 477

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
            +A+          I    +  +          +  D  +               ++   
Sbjct: 478 SLAKKNPWSAL-EYIKNDFRYLESVKEYSSISGQSFDYFNRLFGILHGI-SVDCPTISAF 535

Query: 551 ---ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              + ELE+        +    N++ + T+H++KGLE   VF++D  +            
Sbjct: 536 LVRLQELEKIFEAGGVQNDWEKNQITLSTLHSSKGLEYDSVFMIDMINSEIPGD------ 589

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                      ++++ +K T EE  RL YVGMTRA   L +   
Sbjct: 590 --------------------------KVLENSEKITLEEERRLFYVGMTRAKKDLYLLNP 623

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHN 691
              ++EK        ++V     +
Sbjct: 624 CTLNDEKFMPSIFINEVVQLLQKD 647


>gi|223939230|ref|ZP_03631111.1| UvrD/REP helicase [bacterium Ellin514]
 gi|223892062|gb|EEF58542.1| UvrD/REP helicase [bacterium Ellin514]
          Length = 692

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/646 (13%), Positives = 172/646 (26%), Gaps = 140/646 (21%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
                 Q          +  L      +  I  +       D+   +        +    
Sbjct: 115 APLLGYQRDFSIMDREDAKDLVDACVAEAEIDVKATRFPKADVLADIFSLGLNTQRSIPE 174

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
               + +            +   Y   KK    +DF+DL+     LLK+      +R   
Sbjct: 175 VLAQE-YDYFENLAPQIADIKERYILRKKSTNAMDFDDLLELWLKLLKEHPE---VREHY 230

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            +    IL+DE QDT+ +Q E+I  L                +  VGD+ QSIY++ GA 
Sbjct: 231 QRRFQFILVDEYQDTNALQSELIDLLAA----------RHHNVMVVGDDAQSIYAWRGAN 280

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            + +++              +  + ++  ++RST +IL + +   S              
Sbjct: 281 FQNIIKFPERY--------SEARVYKIETNYRSTPEILNLANAAISANVKQFEKQLTPAR 332

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               +           L   + +                             A  +A  +
Sbjct: 333 KSGLKPV---------LVPCMTASE--------------------------QASFVAQRM 357

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +              +    + VL R            +       I           
Sbjct: 358 LELREEG----------VNMNQMAVLYRSHFHA----LELQLELTRRNIPFSITSGIRFF 403

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETET------ 465
           +   IKD+ A  + + +  D+L+F  +  L   +     D ++       +         
Sbjct: 404 EQAHIKDVAAYIKLVNNPRDELAFKRLVQLLPGVGGKGADKLWARFQSAFKVIPENLQAD 463

Query: 466 ----------------------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                                 +              +   +  I +L            
Sbjct: 464 ARDTLLPSETSTKADRNPVATALQASASAVPKKTAVAWAQFVATISQLETEPVRGKTDKM 523

Query: 504 FTLILGAKKGRQQFISRFGNEVI--DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
              ++      +     + N     D +++   F  +            ++ L       
Sbjct: 524 I-RLIVEAGYDEHLQENYANYRNRLDDIEQLALFAQQFSTTEE--FLAQLALLSNLEAET 580

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
               + ++ +V++ T+H AKGLE  VVF++     +F                       
Sbjct: 581 DEPANNDNEQVKLSTIHQAKGLEFDVVFIIMLCDGLFPS--------------------- 619

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                 +EE  RLLYV +TRA ++L +   
Sbjct: 620 -------------ARSLDTAEGEEEERRLLYVAITRARNELYLSYP 652


>gi|325971393|ref|YP_004247584.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
 gi|324026631|gb|ADY13390.1| UvrD/REP helicase [Spirochaeta sp. Buddy]
          Length = 650

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/548 (17%), Positives = 191/548 (34%), Gaps = 112/548 (20%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   + + Y++ K++   LD++DL+I  ++ L K    A +R+ +    + +L+DE+Q
Sbjct: 169 IDLCMQIFSLYQQRKEERGYLDYDDLLIKFDEALTK---KAALRHAVCTLFDEVLVDEMQ 225

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ IQ+ +++  + +             LF VGD  QSIY F GAE   ++    I   
Sbjct: 226 DTNPIQFNILKHFSRE----------QVNLFCVGDPAQSIYRFRGAEFTHMMEFGTIFSD 275

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
             +          L L++RS  +IL V + + S        + ++         R+    
Sbjct: 276 SIS--------FSLSLNYRSYQEILDVSNWLLSCSSYPYQHTLEAIRGRSENLVRLE--- 324

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                      D   Q    S +A ++                 
Sbjct: 325 ---------------------------DFENQADECSWIADQVV--------------GY 343

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
           +++ I   DI+VL R   +   +           KI        +LT    ++D+ AL R
Sbjct: 344 QEQKIPLSDIMVLYRSSFEAKTLE----AELIRRKIPYRFIGGLVLTKSAHVRDVFALLR 399

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            + +  DDL+++  L+       E    +I    +   T  + + +     + K    + 
Sbjct: 400 LVRNSSDDLAWMRYLQLFPR-IGEISAERIVNNVYSAGTASDSVIQTLESLLGKDHASVT 458

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +     +    +P       +               +    L                +
Sbjct: 459 ALAS--AMKAGTTPLACIQAAIQQLSPLLAERYDHWKQRKQDLQLLEKVARTY-----HT 511

Query: 547 LQELISELEQYPPT-IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           L + I +    P    + ++ ++ + + ++TVH+AKG E+P+ F+       + H     
Sbjct: 512 LGQFIDDFTLEPMHGTQLSNESSDDALTLITVHSAKGTEAPICFVASAIPSQYPHSRSLG 571

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                                 +EE  R+LYV +TRA ++LII 
Sbjct: 572 DL----------------------------------EAEEEERRVLYVALTRAKNELIIT 597

Query: 666 KHSNTSNE 673
           ++S   N 
Sbjct: 598 RYSRARNS 605


>gi|228950057|ref|ZP_04112242.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809584|gb|EEM56020.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 702

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/560 (15%), Positives = 188/560 (33%), Gaps = 103/560 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              + + A YE+ K++  ++DF+D+++   DLL        +R  I ++I +IL+DE QD
Sbjct: 215 RELRDIYAMYEQWKEQQNMIDFDDILVIMYDLLTTN---FKLRELIQEKIKYILVDEFQD 271

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           +S IQ+ +++ +                +  VGD+ QSIY+F GA P  +L       K 
Sbjct: 272 SSSIQYAILQIIAA----------PHNNITIVGDDWQSIYAFRGANPGIILNFPNDYSK- 320

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RS   I+ + + +    +     + ++      +         
Sbjct: 321 -------VKKVILDTNYRSNPFIVGLGNSIIKQNKKQFEKTLNTNKKNGSKPK------- 366

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                + S  DS          A  I   I   I          
Sbjct: 367 ---------------------YFSPDDS-------KQEATMIINDIIGQIKDGNK----- 393

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                 +D  +L R    +     L   L       V    + +  ++  +K ++ + + 
Sbjct: 394 ----NYRDFSILYRTHAVSR---SLIEQLVLKEIPFVQYKTKELFYNNSNVKPIINVLKL 446

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV---------YEYIQKFANCGI 478
            +  + D   +  +  P+    +D +       +  + +         Y    +  +   
Sbjct: 447 AIRPKTDFESLKGVC-PMLYIGKDKVIDSIINAYALDDLEGQTKPLVSYLLKCQLTHNQN 505

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR----QQFISRFGNEVIDVLDEFLN 534
            +   + K I E   ++   +        L  ++      ++ ++     +++ LDE   
Sbjct: 506 KRTMQLYKTIKECRSMSAIEAIQCIRNGYLQYEQYLLDNKRKNMTTHKEMLLEELDELET 565

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                  ++     + I +LE     +K   +  N N + +MT+H +KGLE   V+++  
Sbjct: 566 SAKSF--STIKEFIDFIEKLETQYEKMKELQNEQNVNAISLMTIHGSKGLEFKHVYIIGA 623

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                 HK   ++     ++ +      + +       +                   YV
Sbjct: 624 SEGTLPHKSSLEITDDRVIDGNKDKKEILQELLEEERRLL------------------YV 665

Query: 654 GMTRASDQLIICKHSNTSNE 673
            +TRA D L I        +
Sbjct: 666 AVTRAKDYLHIYSPKCMRGK 685


>gi|220913224|ref|YP_002488533.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
 gi|219860102|gb|ACL40444.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
          Length = 1115

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 115/981 (11%), Positives = 258/981 (26%), Gaps = 159/981 (16%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSL-------SMETGNPTILKKAQTL 53
            L++RF   L+ S        W    F +    K   +        + +G    L   + L
Sbjct: 129  LRDRFTARLDRSLSTTPARTWASYAFDLIRRAKAEGIIPLARPPRLLSGPEQDLIIKELL 188

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            +            + L     T           +   ++   L +++ +S      + + 
Sbjct: 189  EGHRLPGLELPWPADLGGALET-----------RGFRQEVRQLFDRIIESGRTPADLAEL 237

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKN--CVLDFEDLIINTNDLLKKRDVSAWIRY 171
                            A  L + Y +          D   +I     + +    +     
Sbjct: 238  GKACGRQD-----WIAAAALYSEYRDVLDLRMPEAFDPAGIITAARQIFQD---APEFLA 289

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
               Q +  IL+D++Q+ +   +E++  +              +           +  F G
Sbjct: 290  AERQRLQLILVDDIQEANPAVYELLADIAA-----------GKDCLVTSSPDTVVQGFRG 338

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A P  V    R+    AT   +      L  + R    +      V        G     
Sbjct: 339  ARPDLVAELPRLLSPDATVLERP-----LWHAHRLAPAVAEAWLGVAGRISQRAG----G 389

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
              + R   +     G V+                               SA    R +A 
Sbjct: 390  QLSRRLEQTAGDAPGRVEAHLV--------------------------PSAVHELRYVAQ 423

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
             I               +     D+ V+VR            +   +   I V       
Sbjct: 424  RI---------LDQHIGQGRSLTDVAVIVRNGGQVS----ELQRYLSGQGIPVRVPVAES 470

Query: 412  -LTDHLAIKDLMALGRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICTQ--------- 459
             + D +A++ L+      L        + V +L S +   +  ++ ++            
Sbjct: 471  AVRDEVAVRPLLDAYAIALDTALLTPEAAVSLLTSRIGGATPLELRRLRQSLRREELTAG 530

Query: 460  --RHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQF--CSPHDFFTLILGA 510
              R     + E + +              +   + I      A+    +       +  A
Sbjct: 531  GGRGSDSLLVEALLEPGALGSLGIEGRAARRTARMIQSGRQAARQPGANAESVLWALWSA 590

Query: 511  KKGRQQFIS------RFGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISEL--EQYP 558
                  +          G      LD      +   R  +Q   +  ++ +  L  ++ P
Sbjct: 591  TGLSAAWTETALAGGPHGARADRDLDAMMALFHTAERYVDQMPGAGPEQFLEYLLNQELP 650

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                 A +   + V IMT  +A G + PVV +      V+ +  ++   +          
Sbjct: 651  MDTLAARAQVDDAVEIMTPASAAGRQWPVVLIAGLQEGVWPNTRLRGELL-------GST 703

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                      +  +        +  + +  R     ++RA + LI    ++  ++  S  
Sbjct: 704  LYADAVEHGTSYALQRDPLSRLRDIRYDELRSFSTAVSRAEELLICTAVASEDDQPSSFL 763

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNS---------INKDEWIAYEWSTHHPENTPLEREET 729
                 +            +  +T              +   A E +         E    
Sbjct: 764  DYAAPLAPGEDARGFTAVERPMTLRALVAELRQHAQLEGAQAQEAARVLAGLAAAEPPVP 823

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES-------LLSDNQTFNR 782
                     I     +           ++PS +++  K+ L+          + +   + 
Sbjct: 824  GAHPDSWWGIQPLTSTDAVVPPGSTVFVSPSKVESVQKSPLDWFVQAAGGEAATDFARSL 883

Query: 783  GLIIHKLLQVIFTLP-EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            G ++H + Q +     +         +     K        +       + +       M
Sbjct: 884  GTLVHAIAQDMPEASGQEYVAELARRWPQLGMKDNWEGRLDHQRAEAM-VRKLAQYVLVM 942

Query: 842  SCDSYSEVSVSGKINCPKKDI----------IISGRIDQISIS-QQNIFIFEYKTHHHVP 890
                 S + V    +    ++          ++ G++D++ I  +  + I + KT    P
Sbjct: 943  RGSGRSLLGVEQDFDVALGEVLLDDASPREAVLRGQVDRLEIDGEGRLVIVDLKTGKRQP 1002

Query: 891  QEIEHIPYTHIAQLSIYEKIL 911
             + E        QL  Y+  +
Sbjct: 1003 GKTELAS---HPQLGAYQAAV 1020


>gi|28210415|ref|NP_781359.1| DNA helicase II [Clostridium tetani E88]
 gi|28202852|gb|AAO35296.1| DNA helicase II [Clostridium tetani E88]
          Length = 720

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/563 (15%), Positives = 183/563 (32%), Gaps = 108/563 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K+KN +LD++D+++    +L +  V   I        ++I +DE QDTS I
Sbjct: 193 QIYKEYELFKRKNNLLDYDDMLVKCYKILNEDIV---ILDFYRNLYDYIEVDECQDTSKI 249

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E+I+ ++   F           L  VGD+ QSIYS+ GA    +L  K+   K     
Sbjct: 250 QQEIIKLISAPKF----------NLCIVGDDDQSIYSWRGAFSDGLLNFKKEYHKD---- 295

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +  +  +FRS  +I+   ++     +                             
Sbjct: 296 ---GKLFFIQQNFRSDKNIVITANEFIKSNKKRYNKELF--------------------- 331

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                         +  + +  D             +I + + N+     +         
Sbjct: 332 -------TENEEGNKIKFINTKDEYD----------QINFLVKNLKEKSNLRET------ 368

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILS 430
                 +L R    +  I            I     D      +   +KD+++       
Sbjct: 369 -----TILYRNNISSIPIVDRL----IQENIPFYIKDSVPSFFNSWVVKDILSFFELAFD 419

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS-KFQHVIKYIH 489
             +  +F  +         +DD+  + T++ +                + + +   +   
Sbjct: 420 LTNIDAFEKIYYKMKSYVKKDDLNILYTRKIKESVFRTLYNNQGYSSANYRLKSFEEKFM 479

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           +L  ++ + +  +F    L  +     +  +F   +   +   L+  L    +S  +L++
Sbjct: 480 KLSSLSGYKAI-NFIRYELNYEDYMMDYCDKFKFNIN-NVQTILS-ILAMVLSSCPTLED 536

Query: 550 LISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +  +L      ++++      N V + T+H+ KGLE   V+++D    +           
Sbjct: 537 IDGKLIYLKDEMEKSKYKGKFNGVILSTMHSCKGLEFDTVYIIDLIEHIIPSPESLDKSK 596

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
               +D                              EE  RL+YV +TRA   L +    
Sbjct: 597 KDDYSD-----------------------------FEEETRLMYVAITRARKNLYLINTL 627

Query: 669 NTSNEKKSNQRTWYDMVYDSFHN 691
             +N+K +       +   S  +
Sbjct: 628 TRNNKKCTPSIFVEKLYKISHKD 650


>gi|288560440|ref|YP_003423926.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
            ruminantium M1]
 gi|288543150|gb|ADC47034.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
            ruminantium M1]
          Length = 1565

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 140/927 (15%), Positives = 268/927 (28%), Gaps = 211/927 (22%)

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
             T A           Y E   +    DF+ + I T + LK    +            ++L
Sbjct: 202  RTNALYLQIAKSYPKYLELLDEKGFSDFDQMQIKTLNYLKTNPNTI---------YKNVL 252

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QDT  +Q ++   L ++                VGD  QSIY F GA        K
Sbjct: 253  VDEFQDTDPVQMKIFEILMKNADS----------FTVVGDIDQSIYGFRGAN-------K 295

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               +    N   +   + L +++RS   I+ + +             + +          
Sbjct: 296  NYFEYLYNNYDDRVYKVNLNVNYRSANQIIDISEDFIKSQRAEGAKQDKAL--------- 346

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G   L        +     +                    A+ I   I  +  +  
Sbjct: 347  ----GARDLDRNTYFLVNENSESE--------------------AKAIFEMIRYLHDSGK 382

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            I            +I +L R  + +     L + L  D  I         L D   I+ +
Sbjct: 383  IE--------NYNEIAILSRSIRFSNTAQDLIQ-LFIDNNIPYHVRGVPDLFDRPEIRSV 433

Query: 422  MALGRFI------LSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHE--- 462
            + L   +       + + DL  +  L             LFN S++    + + + E   
Sbjct: 434  ITLIHHLIEDTNPHNHKFDLWELEWLNLKAYTGESFNQVLFNLSDETKNILNSIQEEFEE 493

Query: 463  --------------TETVYEYIQKFANCGISKF-------------------------QH 483
                           +  ++Y+ K       K                          + 
Sbjct: 494  NVLKEEKRAYLKVTGKKSHKYVFKRVFERDEKVLIELFKNIERPILSNENLIRYGVKNKQ 553

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-------VLDEFLNFT 536
             +++   L  +  + +  ++            + ++   N + +         DE  N  
Sbjct: 554  DLEFFRRLNDLKAYFNSEEYMDSEDTILDIYMKLLTDVCNYLTEDFINDPINRDELKNLA 613

Query: 537  ------LRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                     E      +L+     L          +  +   V++MTVH +KGLE PVV 
Sbjct: 614  ILSNTFHNYELIVDNKNLKGAYYFLRYNIAGYSTDNDESEG-VQLMTVHKSKGLEFPVVI 672

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L+    + F  +             D     + P S           +   +   EE +R
Sbjct: 673  LLSLNHKKFPSQ-----------YKDEYDRFYTPNSCLEYKNYDS-KEEEIQDYLEEEDR 720

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            ++YV MTRA D L++      + E +  +    D +      +  +K I   +    D  
Sbjct: 721  IVYVAMTRAQDILVLSNLIKETPELEGLKAELNDNLSQIEKIE-IIKDIPKGHIKIHDLI 779

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                 S    E+   +  +T+ +    +K              +   L+  +++      
Sbjct: 780  NRNLSSCKFLEDDFSQLPKTVCEKPQVKK-------------EDFLNLSFYSLENYVACP 826

Query: 770  L---------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
                       S  +      RGL +H LL+ I                +   +     E
Sbjct: 827  FKYKLMHDINFSESTMEFNKLRGLFVHNLLETINN-----------RIRSNGNRYIGDDE 875

Query: 821  YKNLLLSITRLLENPMMT------TAMSCDSY----------SEVSVSGKINCPKKDIII 864
               +            +         +  D            + ++     +  K+   +
Sbjct: 876  VLAIFERFQDSFRFENLRLSKKEYDIIKNDVLYYYNTFGKDFNILNTELSFSIKKEYYGL 935

Query: 865  SGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
            SG ID I  +    + I +YK   +  +   H    +I Q+  Y   LKDS+    L   
Sbjct: 936  SGIIDLIYKTKDGKMGILDYK---NTERISRHYVQNYIKQVYTYMIALKDSFEIDELR-- 990

Query: 924  LIYVSEPKVFIIP--QNKLNKAFAEIS 948
            +  +   K+  +   Q  L+    E+ 
Sbjct: 991  IYAIKARKMISVDINQKSLDILLEELD 1017


>gi|167587569|ref|ZP_02379957.1| exodeoxyribonuclease V, beta subunit [Burkholderia ubonensis Bu]
          Length = 898

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 108/701 (15%), Positives = 210/701 (29%), Gaps = 49/701 (6%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
            +W      +  + +    ++          A  L   +      +  + L    L    
Sbjct: 240 RIWAAERDALDALLRAAQPALNQRTHKPEAIADALDAWAAHFAQADATAALPKAALKLTR 299

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
           T       +          E +  + D  +   +     +      A L  A        
Sbjct: 300 TALVKATKKGGATPGHPFFE-IADALDAAVAAAEAVQRARWLALIAAWLDDAPR---ELA 355

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           E K+   ++ F+DL+ N    L +     W+   +       LIDE QDT  +Q+ +   
Sbjct: 356 ERKRTRRIVSFDDLLANLYHALHEHP---WLADTLRARYPAALIDEFQDTDPLQFAIFDR 412

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           +                LF VGD KQ+IYSF  A+    L  +              +  
Sbjct: 413 IFA----------PGGPLFLVGDPKQAIYSFRAADLHTYLAARAR----------ASACY 452

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L ++ RST  I+   ++ F     A  L       +R  +          +   +  + 
Sbjct: 453 TLAVNQRSTPAIVDACNRFFQSNPRAFVLDGLDYYPVRAGTR---------VRAPLADET 503

Query: 319 DSQCNPQQESWTSYFDS---LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           D+        WT        L +++ A       A     M G            +   D
Sbjct: 504 DAGPAGDFRIWTLPDGDGVWLKRDAQAYAAQACAAEIARLMRGARDGRVRLGDTPLSPGD 563

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           + VLV+  K   L+          + I  V   +  +      + L  +   I +  D  
Sbjct: 564 VAVLVQTHKQGSLVKREL----ARWGIGSVELAQASVFSTGDAEQLERVLAAIDAPGDLR 619

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI--SKFQHVIKYIHELIH 493
                L S  F      ++++     +           AN     S  +   +Y      
Sbjct: 620 RLRAALASDWFGLDAHALWRMEQGGDDAPGADAAAIGAANGADAMSWVERFSRYRLVWRE 679

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS- 552
                    F   +  A++             ++ L E        +     +L+ L + 
Sbjct: 680 RGFAVMWRTFTRELRIAERLMAGADGERRVTDVNHLAELTQARASAQPGIAPTLRWLAAQ 739

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            L+      +    ++ N V+I+TVH +KGLE  +VF                +      
Sbjct: 740 RLDGGGEDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGALREPFASGLPDAREY 799

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII-CKHSNTS 671
           +D+ G  +        +       +   +    E  RL+YV +TRA  +  +      +S
Sbjct: 800 HDEAGDAVLHYGC--DDEAAEHAARQALREQAAERARLVYVALTRAVYRCYLVAGPYLSS 857

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
              + ++R+  + +     + +        ++  +  W A 
Sbjct: 858 RSTRESRRSVLNWLVAGGGSFDAWLDEPPGDATLEQAWRAL 898


>gi|154482468|ref|ZP_02024916.1| hypothetical protein EUBVEN_00135 [Eubacterium ventriosum ATCC
           27560]
 gi|149736669|gb|EDM52555.1| hypothetical protein EUBVEN_00135 [Eubacterium ventriosum ATCC
           27560]
          Length = 609

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/552 (16%), Positives = 176/552 (31%), Gaps = 130/552 (23%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y    KK+  +DF+D++     LL +      I  +  +   +ILIDE QD + IQ
Sbjct: 163 VYNAYNLELKKDGKMDFDDILRECYLLLCENHT---ILEQWRELYKYILIDEFQDINRIQ 219

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +I  L                +F VGD+ QSIY F GA P+ ++  K    +      
Sbjct: 220 MNIIELLASPL----------NNIFVVGDDDQSIYGFRGARPEIMIEFKDYYPE------ 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +I L +++RST  I+ V  +V    +        +                     
Sbjct: 264 --AELIVLDVNYRSTQSIINVAGRVIENNKTRLDKCAHA--------------------- 300

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                ++    P    + +  + L          + +   I                 I 
Sbjct: 301 ----NNNKDFQPDIRKFRNQVEEL----------KFVVSKIKEYENQG----------IS 336

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             ++ +LVR       I+   +  K + +    G  R  + + +  KD+++  R  L  +
Sbjct: 337 LSEMAILVRNNSQIQEISSFLKNRKIEAE---SGKHRSNIYNGMVAKDILSYVRGALKFD 393

Query: 433 DDLSFVC---MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                     +L  P    S   +  +         +    + ++   I  F   I+ I 
Sbjct: 394 GTYFNENLIYVLNKPQRYISRQVVLSV------NMNISAVRRIYSKNNIDSFLFHIEMIR 447

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR--NEQNSYSSL 547
           +L        P    + I       ++++  +  E    +   L    +   E + +++L
Sbjct: 448 KL-------PPQAALSYIRKGAGY-EEYLRLYAIENNIPMSGLLKQLEQLVQECSKFNTL 499

Query: 548 QELISELEQYPPTIKRA-------HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++ I+ ++    +  +            +N + IMT+H +KGLE   VF+VD    +   
Sbjct: 500 EQWINSIDSAQNSEGQNFGKKSSGEGGTNNRINIMTMHGSKGLEFKAVFIVDANQGIIPT 559

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               +                                            L YV +TRA D
Sbjct: 560 SKALRERDFEEERR-----------------------------------LFYVAITRAID 584

Query: 661 QLIICKHSNTSN 672
            L I        
Sbjct: 585 YLNIYAVEERLG 596


>gi|300694290|ref|YP_003750263.1| ATP-dependent DNA helicase ii protein (uvrd) [Ralstonia
           solanacearum PSI07]
 gi|299076327|emb|CBJ35640.2| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia
           solanacearum PSI07]
          Length = 710

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 101/729 (13%), Positives = 199/729 (27%), Gaps = 109/729 (14%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R    L+     +            S        ++          A+ L++ +Q   +
Sbjct: 81  RRAASELSSRAGHLLARAMHGSTGARSAAGTTYQTALPWAGTFHGIGARLLREYAQRIGL 140

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE-FIKIRDRFNTYKMFK 121
              F++             ++ +     ++   LK+                    K   
Sbjct: 141 APDFTIHDRSDSADLLNVVRHELNLSTKERRFPLKQTCLAIYSRAINAEHPLDAVLKQHF 200

Query: 122 STLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              A      + L   Y EAK+   VLD++DL++  + ++   D++A I        +HI
Sbjct: 201 PWCAMWQAQLRTLFDAYVEAKQAQHVLDYDDLLLYWHAMVSDADLAAEI----GARFDHI 256

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++R+L              R L  VGD+ QSIY+F  A  + +L  
Sbjct: 257 LVDEYQDTNRLQASILRAL----------RPDGRGLTVVGDDAQSIYAFRAATVRNILDF 306

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            R   +           + L  ++RST  IL   + V          +  +     HR  
Sbjct: 307 PRHFTR-------PARTVLLERNYRSTQPILDASNGVMRFATERFAKTLWTDRASTHRP- 358

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                              L      +  AR +A  +       
Sbjct: 359 ----------------------------------RLISVRDEAEQARCVAEQVLQHREGG 384

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +  K   VL R    +  +            I  V        +   +KD
Sbjct: 385 ----------LALKSQAVLFRTASHSAPLEIEL----TRRNIPFVKYGGLKFLEAAHVKD 430

Query: 421 LMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           ++++ R+  +  + ++   +++  P    +                      +       
Sbjct: 431 VLSVLRWAENPRNRIAGFRVIQLLPGAGPATAARVLDAMAEAAAPVAALLAHEPPARLAG 490

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            +  ++  +  L       +       +        + +          LD+        
Sbjct: 491 DWAALMTLMATLRAPKDGAAWAGELEAVGAWYAPHMERLHDDAAVRQGDLDQLARMAGTY 550

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                  L E+  +  +           + + + + T+H++KG E   V+L++       
Sbjct: 551 ASRE-RFLTEMTLDPPELTSDESGDPYRDEDYLILSTIHSSKGQEWKAVYLLNAVDGCMP 609

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                               +        EE  RLLYV MTRA 
Sbjct: 610 ----------------------------------ADLGAGSHDELEEERRLLYVAMTRAR 635

Query: 660 DQL-IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
           D L I+        ++  N           F     +   +       +           
Sbjct: 636 DHLDILVPQRFYVTQQTPNGDRHLYASRTRFIPPALLPLFEACAWPPPEPGADPAAEARA 695

Query: 719 PENTPLERE 727
                L R+
Sbjct: 696 AAKVDLARK 704


>gi|257075414|ref|ZP_05569775.1| UvrD/REP helicase [Ferroplasma acidarmanus fer1]
          Length = 889

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/805 (13%), Positives = 229/805 (28%), Gaps = 189/805 (23%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE +  KN ++ F  LI    + +K               I ++L+DE QD + +Q
Sbjct: 179 ILDRYENSMNKNKIISFSQLIYFAVNKIKDNKEKI-------SNIKYLLVDEYQDINKVQ 231

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++I+ +               ++FAVGD +QSIY + G+  K                 
Sbjct: 232 YDLIKQI-----------GENASIFAVGDPRQSIYEWRGSNYKYFEEFSNDFSN------ 274

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                  L  + RST  I+ + + +                            G   +  
Sbjct: 275 --AEEFTLNENRRSTKSIVNISNTIVKQ--------------------FPDNPGYPDMVP 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       ++       +       A  +A +I   I               +  +
Sbjct: 313 VR----------EKSGDVIATEYENASREAEGIANKIKCEIK--------------KDKK 348

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                VL+R    +     L        KI  +      L     +  L  +  +     
Sbjct: 349 YSKFAVLLRSVNTS---GDLIIDEFKKQKIPYLVAGNAGLFKRGEVLALAQIFCWFADDG 405

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
                        +      +          E     + K  N       H+   ++   
Sbjct: 406 ------------FWYVGRYKLTDNELLEKAIENWETTVNKLNNNIKDDLNHIKSSLNSYG 453

Query: 493 HIAQFCSPHDFFTLILGAKKGRQ-QFISRFGNEVIDVLDEFLNFTLRNEQN--------- 542
                      +  +L           +   N ++  +  F       EQ+         
Sbjct: 454 DYRV------LYQDVLKRFDYSALDQDNDLDNAILANIGRFTKVLGDYEQSVRYGGGNKN 507

Query: 543 ---SYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  L   I+          K    +  N V + T+H +KGLE   VFL    ++ F
Sbjct: 508 IQKEMKDLCWFINTYANHSYQEAKIEDLSKDNVVTVSTIHQSKGLEWQTVFLPSIINKRF 567

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                              +  +        ++         +++ +   RL YV +TRA
Sbjct: 568 PS-----------------LTHFKSNLMIDQSLYEYSRY---ETSLDSEYRLFYVAVTRA 607

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +  ++   S     +K+++  +  ++      ++   + +   +               
Sbjct: 608 KNYCLMSNFSAYPTGRKTSESEFMRIIDKYEPVEDIEIETEDNFNSTDVF---------- 657

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                          +    +      P        Y L+     T+G +          
Sbjct: 658 --------------SIPVTSLIDYKRCPYH------YKLSKEWGYTQGVSPF-------- 689

Query: 779 TFNRGLIIHKLLQVIFT-------LPEHKRKNFITS--YCTKNAKLWPAKEYKNLLLSIT 829
               G  +H +LQ +         + EH  +N + +  +    +  +   + K++   I 
Sbjct: 690 -MGYGEALHYILQCLSEAIINNKQIDEHYIENVVNTKFFLPFASTQFLDNQKKDINKKIK 748

Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT--HH 887
            + +       +  +  SEV    +I  P ++ II G+ID I     N  I +YKT    
Sbjct: 749 LIFDT-----YLKNNKISEV--ESRIEFPVENAIIDGKIDVIIDKHGNAEIRDYKTSEDV 801

Query: 888 HVPQEIEHIPYTHIAQLSIYEKILK 912
              +E +        Q+ +Y + L+
Sbjct: 802 VTKEEAD-------MQILLYAEGLR 819


>gi|186475566|ref|YP_001857036.1| UvrD/REP helicase [Burkholderia phymatum STM815]
 gi|184192025|gb|ACC69990.1| UvrD/REP helicase [Burkholderia phymatum STM815]
          Length = 750

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 103/747 (13%), Positives = 215/747 (28%), Gaps = 131/747 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQ 60
            R  L +      I              +  +       G   + + A    L  +    
Sbjct: 111 RRAALEMTRRVTRIAGMALGTRGALAQGL-TWSGTFHSVGARLLREYADLIGLSPSFTIN 169

Query: 61  CIEERFSLLSSFFLTQKF-TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   LL+       F   +K   ++        +  ++  +      + +  + +  
Sbjct: 170 DREDSADLLNLVRHELGFSAKEKRFPSKS---ACFAIYSRVVNTGASLADVLN--SAFPW 224

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            +   A L +   L A Y +AK+K  VLD++DL++  + +  +  ++A     +    +H
Sbjct: 225 CREWEADLRM---LFAAYVDAKQKQSVLDYDDLLLYWSHMAAEPAIAAD----LSGRFDH 277

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF GA  + +L 
Sbjct: 278 VLVDEYQDTNRLQASILLAL----------KPDGRGLTVVGDDAQSIYSFRGATVRNILD 327

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                             + L  ++RST  IL   + V  +       +  +      R 
Sbjct: 328 FPAHF-------DPPARQVTLERNYRSTQPILEASNAVIGLASERYTKNLWTDKPSAQRP 380

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                               L   +  +  AR +   +      
Sbjct: 381 -----------------------------------HLVTVADDADQARYVVEQVLAAREA 405

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      ++ K   VL R    +  +            I  V        D + +K
Sbjct: 406 G----------MKLKSQAVLFRAAHHSATLEIEL----TRRNIPFVKFGGLKFLDSVHVK 451

Query: 420 DLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           D++++ R+  +  D ++   +  L   +   +   +      R +       ++      
Sbjct: 452 DVLSVLRWAENPRDRVAGFRVVQLLPGVGPATAARVLDDIAARADALGSAGGLEAAHGVS 511

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                 +  +      +  +         + G +                 L        
Sbjct: 512 TCAAGALTAFAPPARTLEDWHPFVAMMASVCGRQTPWPAEFEMVRRWYEPHLQRNHEDAS 571

Query: 538 ---------RNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLE 584
                     +   +Y+S +  ++EL   PP      S     + + + + T+H+AKG E
Sbjct: 572 IRQADLVQMESIAGTYASRERFLTELTLDPPDATSDESGVPLIDEDYLILSTIHSAKGQE 631

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              VF+++                                                +   
Sbjct: 632 WRNVFVLNGVDGCIPSDLGTGS----------------------------------EEEI 657

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           +E  RLLYV MTRA + L I          +++    +     +      +  +  +++ 
Sbjct: 658 DEERRLLYVAMTRAKEDLHIVMPQRFYVHNQTHLGDRHVWASRTRFIPPHLLPLFDSHAW 717

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIK 731
                 +             + E   K
Sbjct: 718 PPAPVASAPTEMGLAAAAQAKIEIAAK 744


>gi|295090956|emb|CBK77063.1| Superfamily I DNA and RNA helicases [Clostridium cf. saccharolyticum
            K10]
          Length = 1133

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 99/619 (15%), Positives = 176/619 (28%), Gaps = 120/619 (19%)

Query: 56   ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD--LKEKLKKSQDEFIKIRDR 113
             S  +     F L  S  LT       +++ ++  K  P   L+    +    +      
Sbjct: 600  YSMLRQAGAEFELADSLELT---ELASDVLKEKKLKIRPAEFLRRVSAEKCRRWEAGDAA 656

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                   +         +     Y+   ++  + DF+DL I    LL++   +A     +
Sbjct: 657  CGKEACKEEKNLLSEKQEEAFELYQRRLREAGLYDFDDLQIEVLRLLEEDREAA---AGL 713

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
                 ++L+DE QD S IQ+ +IR+  ++           R LF +GD  QSIY F G++
Sbjct: 714  CSRFRYLLVDEFQDISPIQYRLIRNWNQE----------GRELFVIGDPDQSIYGFRGSD 763

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+   R              +   + L  ++RS+  I      + S              
Sbjct: 764  PECFRRLLTEFP--------ETCTVRLEQNYRSSLQITEGACAMISNNPG---------- 805

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                                      +               L +    +    R+   I
Sbjct: 806  -------------------GERRLISAAGEGLPIRIAKAAGRLSEGIFTAREINRMIGGI 846

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +M+      +  +K+V    DI VL R  +    I    R       I  +   R    
Sbjct: 847  -DMLDAQEREAVQEKKVRSFSDIAVLCRTHRQAEEIEECLR----KEGIPCIVTGRGEFL 901

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
            +   +++     R +L    D                             E   +  ++ 
Sbjct: 902  EAETVREATGFFRSLLHDSSDT----------------------------EKAQQQSREI 933

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                    + V   + E         P +        +   +           + L++  
Sbjct: 934  PFMKKRLGESVYGGLREKYEPMMKKKPAELIRSYREDRGLLED----------EPLEKLT 983

Query: 534  NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               L   +     L  L +                 + V +MT+H AKGLE P V +   
Sbjct: 984  GMAL-FHRTMREFLDNL-AFGADGDLRRCGEKRYTADAVSLMTLHAAKGLEFPAVIIAGV 1041

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                   +                      Q K              +  +EE  RL YV
Sbjct: 1042 RKYSIPME--------------------PEQKKGEEPGKITAESEEDRLKKEEERRLFYV 1081

Query: 654  GMTRASDQLIICKHSNTSN 672
            GMTRA ++LI+      S 
Sbjct: 1082 GMTRAKEELILVTSGTESE 1100


>gi|15618648|ref|NP_224934.1| exodeoxyribonuclease V, Beta [Chlamydophila pneumoniae CWL029]
 gi|4377044|gb|AAD18877.1| Exodeoxyribonuclease V, Beta [Chlamydophila pneumoniae CWL029]
          Length = 1050

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 119/834 (14%), Positives = 240/834 (28%), Gaps = 161/834 (19%)

Query: 126  SLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               +   L    +E  K+N    L  ++  +   + L     +  +   + ++   +LID
Sbjct: 316  LDRIFNTLLVDLQEYLKQNYTPWLSPDE-SVFALEKLLSSSEAQPVVQALREQYQLVLID 374

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT   QW +  +L         +     +LF +GD KQSIY +  A+    L  K  
Sbjct: 375  EFQDTDKQQWSIFSNLF-------ISPKFTGSLFLIGDPKQSIYEWRSADLPTYLTAKSS 427

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              +           ++L  ++RST  ++  ++++F        +                
Sbjct: 428  FSED--------KQLQLVNNYRSTPKLMEAINQIFGKISPFLEI---------------- 463

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G + +    ++   S+          +F            A  I      +       
Sbjct: 464  -PGYLPIEYHALNPQSSETFENPPHAPIHFFFYET---IKDQALWIFSEALRLQKEQ--- 516

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL-M 422
                   I   +++VLV               L +   I V  +    +        L  
Sbjct: 517  ------KIPLGNMVVLVSDSNQAF-------ELISYATIPVSFSKNKSIFHLTETHILTT 563

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            AL   IL  E+      +L S LF  S D++      + E  T+Y               
Sbjct: 564  ALLEAILHPENYEKISKILFSSLFGLSLDEVTT----KKEDFTIYFQSLHSYISHHGLLA 619

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
               + +    ++       D     +    G                   L+       +
Sbjct: 620  TFYRVMTTQGNVLFSSPRGDLIFQEMEKLCGY------------------LDTISSYPYH 661

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                L+               ++S +   ++I T+H++KGLE  +VF             
Sbjct: 662  QLLHLKNFSETGRWEEELAISSYSEDLETLKITTIHSSKGLEYDIVFCPG---------- 711

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                            + K  K  +  E  R +YV  TRA  QL
Sbjct: 712  --------------------------------IEKSKKNKSSSELLREMYVACTRAKKQL 739

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHN------DERVKKIKLTNSINKDEWIAYEWST 716
             +   +   + ++S+  T Y  +  +  +          +   L +     +        
Sbjct: 740  YLPISTQPPSLQRSSALTNYVKLEGTQSSAYDLAIHLHQEHPDLFSYSLPKDHGHATTVL 799

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
            + P       + T  + +      K L    K+  + PY   P +               
Sbjct: 800  NLPLLETFALKVTPPKTIFSFSSTKFLLDTHKDSQSIPYSKLPISKQQL----------- 848

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                  G++IHK+L+ I        +  +    +   +       +    +I +LL    
Sbjct: 849  PLGEKTGILIHKILESIQFSLLQDTEYLM----STIMRFIKHTHLEGFEETILKLLSKTF 904

Query: 837  MTTA-MSCDSYS-------EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +    S  ++S       ++         +   +  G ID     +   +I ++KT   
Sbjct: 905  FSPLTFSSQTFSLSQVLPNKIFRETSFLFLENQELWQGVIDLFFEHEGKYYIIDWKTSFL 964

Query: 889  VPQEIEHIP---------YTHIAQLSIYEKILKDSYP----NKSLVCLLIYVSE 929
                 ++                Q  IY K ++        +  +   +I++  
Sbjct: 965  GETNSDYSKSNLSIYIKQEKLDYQGRIYVKAVRKFLNQFEIDDDVELGVIFIRG 1018


>gi|16752303|ref|NP_444560.1| exodeoxyribonuclease V, beta chain, putative [Chlamydophila
            pneumoniae AR39]
 gi|7188945|gb|AAF37903.1| exodeoxyribonuclease V, beta chain, putative [Chlamydophila
            pneumoniae AR39]
          Length = 1050

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 119/834 (14%), Positives = 240/834 (28%), Gaps = 161/834 (19%)

Query: 126  SLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               +   L    +E  K+N    L  ++  +   + L     +  +   + ++   +LID
Sbjct: 316  LDRIFNTLLVDLQEYLKQNYTPWLSPDE-SVFALEKLLSSSEAQPVVQALREQYQLVLID 374

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT   QW +  +L         +     +LF +GD KQSIY +  A+    L  K  
Sbjct: 375  EFQDTDKQQWSIFSNLF-------ISPKFTGSLFLIGDPKQSIYEWRSADLPTYLTAKSS 427

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              +           ++L  ++RST  ++  ++++F        +                
Sbjct: 428  FSED--------KQLQLVNNYRSTPKLMEAINQIFGKISPFLEI---------------- 463

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G + +    ++   S+          +F            A  I      +       
Sbjct: 464  -PGYLPIEYHALNPQSSETFENPPHAPIHFFFYET---IKDQALWIFSEALRLQKEQ--- 516

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL-M 422
                   I   +++VLV               L +   I V  +    +        L  
Sbjct: 517  ------KIPLGNMVVLVSDSNQAF-------ELISYATIPVSFSKNKSIFHLTETHILTT 563

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            AL   IL  E+      +L S LF  S D++      + E  T+Y               
Sbjct: 564  ALLEAILHPENYEKISKILFSSLFGLSLDEVTT----KKEDFTIYFQSLHSYISHHGLLA 619

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
               + +    ++       D     +    G                   L+       +
Sbjct: 620  TFYRVMTTQGNVLFSSPRGDLIFQEMEKLCGY------------------LDTISSYPYH 661

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                L+               ++S +   ++I T+H++KGLE  +VF             
Sbjct: 662  QLLHLKNFSETGRWEEELAISSYSEDLETLKITTIHSSKGLEYDIVFCPG---------- 711

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                            + K  K  +  E  R +YV  TRA  QL
Sbjct: 712  --------------------------------IEKSKKNKSSSELLREMYVACTRAKKQL 739

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHN------DERVKKIKLTNSINKDEWIAYEWST 716
             +   +   + ++S+  T Y  +  +  +          +   L +     +        
Sbjct: 740  YLPISTQPPSLQRSSALTNYVKLEGTQSSAYDLAIHLHQEHPDLFSYSLPKDHGHATTVL 799

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
            + P       + T  + +      K L    K+  + PY   P +               
Sbjct: 800  NLPLLETFALKVTPPKTIFSFSSTKFLLDTHKDSQSIPYSKLPISKQQL----------- 848

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                  G++IHK+L+ I        +  +    +   +       +    +I +LL    
Sbjct: 849  PLGEKTGILIHKILESIQFSLLQDTEYLM----STIMRFIKHTHLEGFEETILKLLSKTF 904

Query: 837  MTTA-MSCDSYS-------EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +    S  ++S       ++         +   +  G ID     +   +I ++KT   
Sbjct: 905  FSPLTFSSQTFSLSQVLPNKIFRETSFLFLENQELWQGVIDLFFEHEGKYYIIDWKTSFL 964

Query: 889  VPQEIEHIP---------YTHIAQLSIYEKILKDSYP----NKSLVCLLIYVSE 929
                 ++                Q  IY K ++        +  +   +I++  
Sbjct: 965  GETNSDYSKSNLSIYIKQEKLDYQGRIYVKAVRKFLNQFEIDDDVELGVIFIRG 1018


>gi|15836270|ref|NP_300794.1| exodeoxyribonuclease V, beta [Chlamydophila pneumoniae J138]
 gi|33242097|ref|NP_877038.1| exodeoxyribonuclease V 135K chain [Chlamydophila pneumoniae TW-183]
 gi|12644495|sp|Q9Z7G7|EX5B_CHLPN RecName: Full=Exodeoxyribonuclease V beta chain
 gi|8979110|dbj|BAA98945.1| exodeoxyribonuclease V, beta [Chlamydophila pneumoniae J138]
 gi|33236607|gb|AAP98695.1| exodeoxyribonuclease V 135K chain [Chlamydophila pneumoniae TW-183]
          Length = 1050

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 119/834 (14%), Positives = 240/834 (28%), Gaps = 161/834 (19%)

Query: 126  SLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               +   L    +E  K+N    L  ++  +   + L     +  +   + ++   +LID
Sbjct: 316  LDRIFNTLLVDLQEYLKQNYTPWLSPDE-SVFALEKLLSSSEAQPVVQALREQYQLVLID 374

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT   QW +  +L         +     +LF +GD KQSIY +  A+    L  K  
Sbjct: 375  EFQDTDKQQWSIFSNLF-------ISPKFTGSLFLIGDPKQSIYEWRSADLPTYLTAKSS 427

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              +           ++L  ++RST  ++  ++++F        +                
Sbjct: 428  FSED--------KQLQLVNNYRSTPKLMEAINQIFGKISPFLEI---------------- 463

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G + +    ++   S+          +F            A  I      +       
Sbjct: 464  -PGYLPIEYHALNPQSSETFENPPHAPIHFFFYET---IKDQALWIFSEALRLQKEQ--- 516

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL-M 422
                   I   +++VLV               L +   I V  +    +        L  
Sbjct: 517  ------KIPLGNMVVLVSDSNQAF-------ELISYATIPVSFSKNKSIFHLTETHILTT 563

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            AL   IL  E+      +L S LF  S D++      + E  T+Y               
Sbjct: 564  ALLEAILHPENYEKISKILFSSLFGLSLDEVTT----KKEDFTIYFQSLHSYISHHGLLA 619

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
               + +    ++       D     +    G                   L+       +
Sbjct: 620  TFYRVMTTQGNVLFSSPRGDLIFQEMEKLCGY------------------LDTISSYPYH 661

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                L+               ++S +   ++I T+H++KGLE  +VF             
Sbjct: 662  QLLHLKNFSETGRWEEELAISSYSEDLETLKITTIHSSKGLEYDIVFCPG---------- 711

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                            + K  K  +  E  R +YV  TRA  QL
Sbjct: 712  --------------------------------IEKSKKNKSSSELLREMYVACTRAKKQL 739

Query: 663  IICKHSNTSNEKKSNQRTWYDMVYDSFHN------DERVKKIKLTNSINKDEWIAYEWST 716
             +   +   + ++S+  T Y  +  +  +          +   L +     +        
Sbjct: 740  YLPISTQPPSLQRSSALTNYVKLEGTQSSAYDLAIHLHQEHPDLFSYSLPKDHGHATTVL 799

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
            + P       + T  + +      K L    K+  + PY   P +               
Sbjct: 800  NLPLLETFALKVTPPKTIFSFSSTKFLLDTHKDSQSIPYSKLPISKQQL----------- 848

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                  G++IHK+L+ I        +  +    +   +       +    +I +LL    
Sbjct: 849  PLGEKTGILIHKILESIQFSLLQDTEYLM----STIMRFIKHTHLEGFEETILKLLSKTF 904

Query: 837  MTTA-MSCDSYS-------EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
             +    S  ++S       ++         +   +  G ID     +   +I ++KT   
Sbjct: 905  FSPLTFSSQTFSLSQVLPNKIFRETSFLFLENQELWQGVIDLFFEHEGKYYIIDWKTSFL 964

Query: 889  VPQEIEHIP---------YTHIAQLSIYEKILKDSYP----NKSLVCLLIYVSE 929
                 ++                Q  IY K ++        +  +   +I++  
Sbjct: 965  GETNSDYSKSNLSIYIKQEKLDYQGRIYVKAVRKFLNQFEIDDDVELGVIFIRG 1018


>gi|118616501|ref|YP_904833.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium ulcerans
            Agy99]
 gi|118568611|gb|ABL03362.1| exodeoxyribonuclease V (beta chain), RecB [Mycobacterium ulcerans
            Agy99]
          Length = 1110

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 135/1009 (13%), Positives = 268/1009 (26%), Gaps = 165/1009 (16%)

Query: 13   YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
             +    +           +  + + ++ T +       ++L  A  T         L   
Sbjct: 100  LDGTAAERDARQQRLRDALAGFDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDEL 159

Query: 73   FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK--STLASLTLA 130
                          ++ +      ++ L+ ++        +             A +  A
Sbjct: 160  VTEIVDDLYLVHFGRDRDDPPLTYRDALRIARAVVANPSTQLRPLDAPPGSRAAACVGFA 219

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             ++    E  K++  +L ++DL++   D L   D +A  R ++ Q    +++DE QDT  
Sbjct: 220  HHVLEGLETRKRRRGILGYDDLLLRLADALASEDSAA--RARMQQRWPVVMVDEFQDTDA 277

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +QW+VI           +  S   TL  +GD KQ+IY+F G +    L   +        
Sbjct: 278  VQWQVID----------SAFSGRCTLILIGDPKQAIYAFRGGDIVTYLHAAQ-------- 319

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                     L  ++RS + ++  +  V    E              H+  R+        
Sbjct: 320  --TAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVKAHHQGHRLAGAPHNDA 377

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                V +  +              +LP +     + R +A  I  ++ +   F+    R 
Sbjct: 378  LRLRVVRRAT-------LGRRGIQNLPIDILRDHIGRDLASDIGALLASGATFAG---RA 427

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +QA DI V+V K KD             D  I  V      +    A  D +AL      
Sbjct: 428  LQANDIAVIVEKHKDARACHRAL----TDAGIHAVYTGDTDVFSSEAADDWLALLEAFDQ 483

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                        +  F  + +D+ +      +                     V + + E
Sbjct: 484  PHRPGIVRAAAATMFFGKTANDLARGGDALTD--------------------RVAETLRE 523

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                A+       F          +    + G   +  L        +       +L  L
Sbjct: 524  WADYARERGVAAIFEAAQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPAL 583

Query: 551  ISELEQYPP------TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
               L              R   ++   V+IMTV  +KGL+ PVV+L             +
Sbjct: 584  RDWLRGQREDRGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFA--------FNR 635

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
             +     +         +      +     + +   K    + +RL YV MTRA  Q++ 
Sbjct: 636  NIQERELVLFHDRGTRCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVA 695

Query: 665  CKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                               ++       D    +   DE                +    
Sbjct: 696  WWSPAYDEPNGGLSRLLRGRRPGDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESV 755

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFS------------------PIKNDINEPYI 756
                P          +     ++ I  +                     P   + ++   
Sbjct: 756  IAAAPAIAGQPAPSELATRRFDRDIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVA 815

Query: 757  LNPSTIDTKGKTNLESLLSD-NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
              P T          S ++D       G ++H +L+              +    ++A  
Sbjct: 816  EVPLTEVVMSGPEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWW 875

Query: 816  WPAKEYKNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKK------- 860
                    L  ++  + + P+        +      D   E+     +    +       
Sbjct: 876  PVQVPAAQLAAALVPMHDTPLGPLAGGLTLRQIGLPDRLREMDFEFPLAGGDEADAGGHA 935

Query: 861  ---------------------------------------DIIISGRIDQISISQQ----N 877
                                                      +SG +D +          
Sbjct: 936  PDLRLADVGALLRAHLDASDPLAPYDDRLSGDALGGQTLRGYLSGSVDVVLRIPDGPGQR 995

Query: 878  IFIFEYKTHHH-VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
              + +YKT+    P         H         I    + +  L  LL 
Sbjct: 996  YLVVDYKTNWLGDPDRPLTAADYHRP-----RLIEAMLHSDYPLQALLY 1039


>gi|311107647|ref|YP_003980500.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8]
 gi|310762336|gb|ADP17785.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8]
          Length = 707

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 105/684 (15%), Positives = 191/684 (27%), Gaps = 145/684 (21%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R  L +      + + +  L   Q +    +       G   +   AQ   L +A    
Sbjct: 87  RRAALEMERRVGSVLQRVMRLRATQQAPSLPWAGTFHAIGARLLRDCAQRIGLSEAFTIH 146

Query: 61  CIEERFSLL------SSFFLTQKFTPQKNIITQ---EINKKSPDLKEKLKKSQDEFIKIR 111
              +   L+           T+   P K         +      + + LK +     +  
Sbjct: 147 DRGDAEDLMGMVRHELGLSSTKSRFPLKGTCLAIYSRVVNSQTPVADVLKTAFPWCAQWE 206

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           D                    L   Y  AK+   VLD++DL++   +++    ++A +  
Sbjct: 207 DELKN----------------LFRAYVAAKQDQQVLDYDDLLLYWAEMMGDPGIAADV-- 248

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                 +H+L+DE QDT+ +Q  ++ ++              R L  VGD+ QSIYSF  
Sbjct: 249 --GARFDHVLVDEYQDTNRLQSAILMAM----------KPDGRGLTVVGDDAQSIYSFRA 296

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L                  +I L  ++RST  IL   + V  +           
Sbjct: 297 ATVRNILDFPGQFP-------TPARVITLDRNYRSTQPILNASNAVIGLATERYAK---- 345

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                             LW    S    +                  S  +  AR +A 
Sbjct: 346 -----------------DLWTDRKSSQLPELVTV--------------SDEAGQARWVAD 374

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +                    K    L R    +  +            I  V      
Sbjct: 375 QVLAQREGGATL----------KSQAALFRTASHSAALELEL----TRRNIPFVKFGGLR 420

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
             +   +KDL++L R+  +    ++   +    L         K+      +      ++
Sbjct: 421 FLEAAHVKDLLSLLRWAENPRGRMAGFRV-AQLLPGIGPATAGKLMDAMSASAEPLRALR 479

Query: 472 KFAN--CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
           +F        ++         L   A          L L     + + +          L
Sbjct: 480 EFKPGAAAQGEWGAFADTYAALCDPALKWPAD--VDLALRWYGAQLERLYDDARVRRADL 537

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLES 585
           D+                +  ++EL   PP      S     + + + + T+H+AKG E 
Sbjct: 538 DQLARIAAGYGTR-----ERFLTELTLDPPDATSDESGAPHRDEDYMILSTIHSAKGQEW 592

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V++++                                                    E
Sbjct: 593 KAVYVLNVVDGCIPSDMSTGT----------------------------------AEEIE 618

Query: 646 EYNRLLYVGMTRASDQLIICKHSN 669
           E  RLLYV MTRA ++L +     
Sbjct: 619 EERRLLYVAMTRAKERLQLIVPQR 642


>gi|254037294|ref|ZP_04871371.1| I DNA and RNA helicase [Escherichia sp. 1_1_43]
 gi|226840400|gb|EEH72402.1| I DNA and RNA helicase [Escherichia sp. 1_1_43]
          Length = 1131

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 139/938 (14%), Positives = 270/938 (28%), Gaps = 166/938 (17%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            ++  ++       +     F +  I ++        +P +L + + ++       + +  
Sbjct: 255  IARVDTEAAAAIWIGTFHSFGLDLIRRFHDELNLPLDPRLLDRTEAVELLEHEFPVLDLV 314

Query: 67   S--------LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                      + +  LT     +  ++  +            +  +D  + I D     K
Sbjct: 315  HYRNLYDPTRMIADILTGISRAKDEVVDAKT------YLALAQAMRDRAVGIEDIATAEK 368

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
              +           + A YE  KK+   +DF DL+     LL++ +    IR  I     
Sbjct: 369  AIE--------VAKVYATYETLKKQARCIDFGDLVSLPVTLLEENEA---IRSHIQSTYE 417

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H+L+DE QD +     ++++L  D             L+ VGD KQSIY F GA    + 
Sbjct: 418  HVLVDEYQDVNHSSVRLLKALCGD----------GENLWVVGDAKQSIYRFRGASSFNMT 467

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            R                    L  ++RS  +I++     F++         D        
Sbjct: 468  RFGNE-------DFPGGLRYRLKTNYRSVPEIVSAFSN-FALNMAVGDADSD------LN 513

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            + R       +L                                 + A  IA  I  M  
Sbjct: 514  AERKSDAQKPELRCV--------------------------DQGFLQAPSIADAIKEMQN 547

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +            +  D  +L    +    I      L     I V+      + +   I
Sbjct: 548  SG----------YKYSDQAILCTGNEKLSEIGQQLELL----GIPVLYLG--SVFERPEI 591

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCG 477
            KD + L   ++ +      V +   P F  S DD+  I T   E ET  ++  K      
Sbjct: 592  KDWLTLLSLLVDRRAMG-LVRIACLPEFTMSLDDVGSILTHLREDETGSDWKTKIDDFQI 650

Query: 478  ISKFQHVIKYI-HELIHIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVL---DEF 532
                +  +  +   L   +   SP      +L    +   +  +     V        + 
Sbjct: 651  SDDGRTALNRLVKTLSGFSANDSPWSVLATVLLDRTRIAARMATSTNCSVRSQCIATWQL 710

Query: 533  LNFTLRNEQNSY-----SSLQELISELEQYPPTIKRAHSANH---NEVRIMTVHTAKGLE 584
            LNF      +        +L  +   +        R         + VR+MT+H AKGLE
Sbjct: 711  LNFLRAQPLSGEGVFITRTLDRIRRLVRLGDDRDLRQLPTAAQSIDAVRLMTIHGAKGLE 770

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PV+ L    +        K++   P+     G               S+  +      +
Sbjct: 771  FPVIHLPGMNADTLPGNPQKQVCPPPNGMIAGGG--------------SNAKEQFNLEYK 816

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             E   L YV ++RA D+L +   +  +         + + +            +   N  
Sbjct: 817  AERECLFYVALSRAEDRLFLYATTRNAAGSTRKLSDFLNRI---------GPSLVQNNVK 867

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                 I    S         +   +  Q+   +  P++ F      I       P     
Sbjct: 868  PLHAVIEKPESLPVDWVISGDLVLSGAQISLYESCPRRFFYTHILQIGGRRTPTP----- 922

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-----CTKNAKLWPAK 819
                     L  +           + Q +      K  +              A+   A 
Sbjct: 923  --------FLKMHDAVR------NVFQELANTAPVKITDIEDRVTQAFTIEGLAEHGYAP 968

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
            E+K+L + +     +      +     SE   +        +  I+ + D + +      
Sbjct: 969  EFKSLAIGMVNYFAS------IRESHNSEA--TCVFTIKLGETFITIQPDDVLVHPDGR- 1019

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
                KT   V    +          + +    + ++P+
Sbjct: 1020 ----KTFRRVRTGHKRDKEESDLGAAAFVLAARQAFPD 1053


>gi|328955224|ref|YP_004372557.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
 gi|328455548|gb|AEB06742.1| UvrD/REP helicase [Coriobacterium glomerans PW2]
          Length = 1215

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 155/1047 (14%), Positives = 289/1047 (27%), Gaps = 184/1047 (17%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G     S   + + L  L     + ++            ++    + L  A+       +
Sbjct: 182  GREAGTSLRKLVRRLLELSSALPAGMDSVHLARGYADTASLADAYRPLLDATPAASRIAK 241

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLK------EKLKKSQDEFIKIRDRFNTYKM 119
             +L +            ++++  +  + P         E +   + E  +       +  
Sbjct: 242  RALDALERFESSEHRLDDLVSCMMACEVPSHASKVFSSENIAALKAEIAETFVNGWLFCG 301

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
              +  A   LA+ +   Y   K +  +LD  DL+  T   L+  +     +         
Sbjct: 302  TGAIDALAGLARDVEDEYRALKGRRSLLDNNDLLRLTWRALRDNET---FKAAYQGRFRL 358

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QDT  +Q ++I  L              R L  VGD +QSIY F GAE +   R
Sbjct: 359  VMIDEFQDTDQLQVDLIDMLVG---------QGCRALCTVGDAQQSIYRFRGAEVEVFRR 409

Query: 240  EKRINQKRATNAGQKFSI-------------IELPLSFRSTADILTVVDKVFSIPENAQG 286
             +R  + R+   G+                 +EL  +FRS ADIL  V +VF   +   G
Sbjct: 410  REREMRLRSGQCGKAGETVAALSRKDGDARLVELVRNFRSHADILAFVKQVFDGSK--GG 467

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            L  D      H   R        L     +                 ++  +  +A   A
Sbjct: 468  LMADFLDLEAHDDRRN-------LLVPSDATRCRAVLVAGGGAPERAEARAEAIAARFQA 520

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
                     +                A D+++L+ K           R       +S V 
Sbjct: 521  ---------LAQGGQP----------AADMVILLGKMTWADTYARALRS----RGLSAVI 557

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVC-MLKSPLFNFSEDDIFKICTQ------ 459
                +    +  + + AL R + +  D    +   L SPLF     ++  + T       
Sbjct: 558  AGGSVFAGTIEARSVRALARALANPADGADGLVPALCSPLFGLGAQELLALATAVDPKTG 617

Query: 460  ----RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                R     +           +   +     +   +              ++       
Sbjct: 618  EISRRGVEVGLMSDEDASGLSDLPLVRRARDIMRGALRRVGRDPFAGLMRDVVNESGWMT 677

Query: 516  QFISR--FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA---HSANHN 570
            +  +R   G      + + L+   + E    ++ + +  EL+++    +     +    +
Sbjct: 678  RLAARGPEGTAAAANVLKALDAIEQAEGRVGNAPRLITRELDRFMAGKQAPGVLNERGGD 737

Query: 571  EVRIMTVHTAKGLESPVVFLVDT----------------------------------GSQ 596
             VRIMTVH +KGLE PVV + D                                      
Sbjct: 738  AVRIMTVHASKGLEFPVVAVADCFGIGRSVERFQTSREGDAVDAVALPSRFPPAVAPDGS 797

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN----NIVSDLIKHLKKSTQEEYNRLLY 652
                  +K+         D    +   Q  S      +  + + +  ++ + EE  RLLY
Sbjct: 798  RIPSAEVKRRFNRFLNGRDCWFDLEKAQEVSETGSAAHAFAAMREQDRQRSLEERARLLY 857

Query: 653  VGMTRASDQLIICKHSNTSN-------------------------------------EKK 675
            V MTRA D LI+   +                                            
Sbjct: 858  VAMTRAQDLLILALDAGVGRGAEAKLDIDPQRDLTGRVLERILPAGADRLDAPRLVLANS 917

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
            +        + D  +  ER         +   E  +       P+ +  E         D
Sbjct: 918  APGDFELICLTDFCYRGERYGSAAAAQQVASAESASAASGGSEPDGSASEAGICGADDRD 977

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------------NLESL 773
               +             E      S      +                            
Sbjct: 978  TFTLVYPAPLTHSIAPAETARDCYSYTSMAAELQEAGEDRVADGERADRRRSRRWGKPGE 1037

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
                     G   H   Q +                 + A    A   + L  ++ R   
Sbjct: 1038 EPPVDPTALGSAFHAAAQWLIEYGADTVPVRRLDALCR-AWGLSASPRERLEAALARWQH 1096

Query: 834  NPMMTTAMS-CDSYSEVSV--SGKINCPKK-DIIISGRIDQISIS---QQNIFIFEYKTH 886
            + +    +      +EV+   SG     ++      G ID +           + +YKT 
Sbjct: 1097 SDVRRELLCWPVVRAEVAFFSSGMAEARERFGAYAQGAIDALGTDPTRPDRALVIDYKTG 1156

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKD 913
                +  + +  TH  Q  +Y  +L+ 
Sbjct: 1157 GSAAESSDELQATHELQARVYADVLRR 1183


>gi|207724952|ref|YP_002255349.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           MolK2]
 gi|206590179|emb|CAQ37140.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           MolK2]
          Length = 710

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 105/718 (14%), Positives = 206/718 (28%), Gaps = 126/718 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R    L+     +            S        ++          A+ L++ ++   +
Sbjct: 81  RRAASELSSRAGHLLARAMQGNTGTRSAAGTTYQTALPWAGTFHGIGARLLREYAERIGL 140

Query: 63  EERF---SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
              F       S  L      + N+ T+            +                 K 
Sbjct: 141 APDFTIHDRSDSADLLNVVRHELNLSTKARRFPLKQTCLAIYS--RAINAESPLDAVLKQ 198

Query: 120 FKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                A      + L   Y EAK+   VLD++DL++  + ++    ++  I        +
Sbjct: 199 HFPWCAMWQAQLRTLFDAYVEAKQAQHVLDYDDLLLYWHAMVSDAGLATEI----GARFD 254

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HIL+DE QDT+ +Q  ++R+L              R L  VGD+ QSIY+F  A  + +L
Sbjct: 255 HILVDEYQDTNRLQATILRAL----------RPDGRGLTVVGDDAQSIYAFRAATVRNIL 304

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              R   +           + L  ++RST  IL   + V          +  +     HR
Sbjct: 305 DFPRHFTR-------PARTVLLERNYRSTQPILDASNGVMRFATERFAKTLWTDRASTHR 357

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                                L      +  AR +A  +     
Sbjct: 358 P-----------------------------------RLVSVRDEAEQARCVAEQVLQHRE 382

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                       +  K   VL R    +  +            I  V        +   +
Sbjct: 383 GG----------LALKSQAVLFRTASHSAPLEIEL----TRRNIPFVKYGGLKFLEASHV 428

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           KD++++ R+  +  + ++   +++  L         ++     E       +   A+   
Sbjct: 429 KDVLSVLRWAENPRNRIAGFRVIQ-LLPGAGPATAARVLDAMAEAADPIAAL--LAHEPP 485

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ----QFISRFGNEVIDVLDEFLN 534
           ++       +  L+   +       +   LGA         + +          LD+   
Sbjct: 486 ARLAGDWAALMTLMATLRTPKHDAAWAGELGAVGAWYAPHLERLHDDAAVRQGDLDQLAR 545

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFL 590
                     +S +  ++E+   PP +    S     + + + + T+H++KG E   V+L
Sbjct: 546 MAATY-----ASRERFLTEMTLDPPELTSDESGAPYRDEDYLILSTIHSSKGQEWKAVYL 600

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           ++                                           +        EE  RL
Sbjct: 601 LNAVDGCMP----------------------------------ADLGAGSHDELEEERRL 626

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           LYV MTRA D L I         +++     +     +      +  +    +    E
Sbjct: 627 LYVAMTRARDHLDILVPQRFYVTQQTPNGDRHIYASRTRFIPPALLPLFEACAWPPPE 684


>gi|239813421|ref|YP_002942331.1| UvrD/REP helicase [Variovorax paradoxus S110]
 gi|239799998|gb|ACS17065.1| UvrD/REP helicase [Variovorax paradoxus S110]
          Length = 712

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 101/675 (14%), Positives = 198/675 (29%), Gaps = 138/675 (20%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKY-------VSLSMETGNPTILKKAQTLQQ 55
            R    +      +   +  L   +   +            L  E      L    T+  
Sbjct: 95  RRAAQEMERRAGQVLARVLGLKSDKPPALPWAGTFHGIGARLLREYAAHIGLNDHFTIHD 154

Query: 56  ASQTQCIEERFSLLSSFFLTQKFTPQK----NIITQEINKKSPDLKEKLKKSQDEFIKIR 111
               + +            +    P+K    +I ++ +N ++P L E L ++     +  
Sbjct: 155 RGDAEDLMGLVRHELGLSSSVNRFPRKGTCLSIYSRCVNTRAP-LAEVLAEAFPWCAEWE 213

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                                L   Y EAK++  VLD++DL++    ++ +  ++A +  
Sbjct: 214 AELK----------------RLFGAYVEAKQQQNVLDYDDLLLYWAGMVAEPALAALV-- 255

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +  +H+L+DE QDT+L+Q  ++R+L              R +  VGD+ QSIYSF G
Sbjct: 256 --GERFDHVLVDEYQDTNLLQASILRAL----------KPDGRGVTVVGDDAQSIYSFRG 303

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L              Q   ++ L  ++RST  IL V ++V +        +  +
Sbjct: 304 ATVRNILDFPSQFS-------QAARVVTLERNYRSTQPILDVSNRVIAQAAERHAKTLWT 356

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                 R   +                                        +  A  +A 
Sbjct: 357 DKPSAGRPQLVLVPD-----------------------------------EAQQAVWVAD 381

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +                 +  K   VL R    +  +            I  V      
Sbjct: 382 KVLAHREGG----------LALKSQAVLFRAATHSAPLELEL----ARRNIPFVKYGGLK 427

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
             +   +KDL+A+ RF  +    ++   +    +         ++     +       ++
Sbjct: 428 FLEASHVKDLLAVLRFAENPRGRMAGFRV-TQLIPGIGPATGARLLDAMDQAADPAAAVR 486

Query: 472 KFANCG--ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
           +F        ++    +    L   +    P D    +        +            +
Sbjct: 487 EFVPPSAAREEWAVFAEAYAALCAPS-LPWPADVELAVRWYLPHLDRLYDDPSGVRRGDV 545

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           ++          +    L EL  +  +         S + + + + T+H+AKG E   V 
Sbjct: 546 EQLARLASGY-GSRERFLTELTLDPPEATSDKPGPPSLDEDYLILSTIHSAKGQEWNSVH 604

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +++                                                    EE  R
Sbjct: 605 VLNVVDGCLPADV-----------------------------------AQGAHELEEERR 629

Query: 650 LLYVGMTRASDQLII 664
           LLYV MTRA D L +
Sbjct: 630 LLYVAMTRARDHLHL 644


>gi|317011772|gb|ADU85519.1| putative recombination protein RecB [Helicobacter pylori
           SouthAfrica7]
          Length = 949

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 141/926 (15%), Positives = 265/926 (28%), Gaps = 205/926 (22%)

Query: 30  DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89
             ++   L         ++  +T    ++T    E F    +  LT      +    +++
Sbjct: 204 AFDEEAFLKKLRDLNHQIQNIETASDRAKTAIKCESFKEFLNSALTWLEKKSEYQYFKKL 263

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
             K P L+ + ++ +++     D            A           Y+ A  K   LDF
Sbjct: 264 KDKIPTLESECEEIENDLKHYYDA--------KEHALFKKFPKFIQLYDSATSKIQALDF 315

Query: 150 EDLIINTNDLLKKRD--------------VSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             +    + LL  ++               + +  +++D +I HILIDE QDTSL  +++
Sbjct: 316 SAIKDKVHVLLDNQENSYKNSYKNGYEKMPAEFFYFRLDSKIAHILIDEFQDTSLNDYKI 375

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           +    ++   G       R++F VGD KQSIY F G+                 +  + F
Sbjct: 376 LAPFIDEIKAGIGQAKWQRSVFFVGDVKQSIYGFRGS-----------FSSLFESVSKDF 424

Query: 256 SIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
               L  + RS   I+  V+ +F    +N      +          +      V L    
Sbjct: 425 YHDNLEFNHRSAPLIINYVNTIFKKAYQNYPTAYLEQKYPRAFEDKQTEGYVKVSLVP-- 482

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                    +   +L  ++     N++             I  K
Sbjct: 483 -------------------------NERELLLDQVLQEAKNLLKNH----------IDPK 507

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           DI +L    KD   I    +   ++   S   + +        I                
Sbjct: 508 DITILCATNKDALEIKRHLQERLSEICPSTESSAKLSQFVESKIIKNALEHALAEEPYKP 567

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                +LK  L  +  DD   + +   + E+                             
Sbjct: 568 FYKHSVLK--LAGYLHDDTIALPSFNPKKES----------------------------- 596

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                  +F   ++   K  ++                L   +  E  +     E + +L
Sbjct: 597 -----VANFVWKVMEQFKLYEECTQSC-----------LELAVGCEDAN-----EFLEKL 635

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           E            N    +IMT+H +KG++ P V + +   +  S    K +        
Sbjct: 636 ETKEIASF-----NAKGAQIMTIHGSKGMQFPYVIVCERLGKPNSSPTSKFLEEYHGTEL 690

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                    +     +    L K        E   + YV  TRA   LI+          
Sbjct: 691 TRLYYRMKNREVVDKDYARALEKEEVLKN-HEEINVYYVAFTRAELGLIVVAKDKDK--- 746

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                   +M            KI    S  K+  IA      H     ++  E    + 
Sbjct: 747 --------EMRETLDLAPLEAGKIAPVTSSKKEPLIASALIKPHAYGEQVQEIEEEPDID 798

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
            E+                                      D +  N G+ +HK L+   
Sbjct: 799 YEKNN------------------------------------DQEAINFGIALHKGLEY-- 820

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL-ENPMMTTAMSCDSYS-EVSVS 852
               H  K  +  Y   +   +        L     L   +  + T    ++   EV+  
Sbjct: 821 QYAYHIPKECVLEYLNYHYGFYGLDN--QALEESLELFKNDREIQTLFKNNALKGEVAF- 877

Query: 853 GKINCPKKDIIISG---RIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                     +  G   RID +   +   + + +YK+  +          +H AQ+S Y 
Sbjct: 878 ----------LFQGVVSRIDVLLWDRGQNVHVLDYKSSQN-------YQQSHKAQVSHYA 920

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFI 934
           + L+   P+  +   +IY +  ++  
Sbjct: 921 EFLQAQAPHFKIQAGIIY-AHKRLLE 945


>gi|33240542|ref|NP_875484.1| ATP-dependent exoDNAse beta subunit [Prochlorococcus marinus subsp.
            marinus str. CCMP1375]
 gi|33238070|gb|AAQ00137.1| ATP-dependent exoDNAse beta subunit [Prochlorococcus marinus subsp.
            marinus str. CCMP1375]
          Length = 1256

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 116/888 (13%), Positives = 247/888 (27%), Gaps = 181/888 (20%)

Query: 139  EAKKKNCVLDFEDLIINTNDLLKK------RDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            + + +  V+ + D +      L        +  S ++  ++ ++   +L+DE QDT  +Q
Sbjct: 372  QRRNQKGVVSYADQL----KALDPGKTSNFKASSEFLLERLREKYKVVLVDEFQDTDPVQ 427

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            W +I            + S    L  VGD KQSIY F G +    L  ++          
Sbjct: 428  WRIINQ--------AFSKSKEHFLLMVGDPKQSIYKFRGGDLTTYLIARK---------- 469

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            +   I  L  ++RS   ++  ++ + +       L      +    +    + GT  +  
Sbjct: 470  KAERIDSLLTNYRSAPKLMKGLNTLLNAGLKYSKLEAPPLISASKENILFSKSGTAPIEI 529

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
              +              +   D   +      +   +  TI +++   +         + 
Sbjct: 530  IDIKGVTPTPT------SFNDDLPSKALVEENIPVIVTNTILDLLQNHSDE-------LN 576

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              DI VLV + +         R       +      +  + D    K++      +    
Sbjct: 577  PHDICVLVSRHEQA----ENIRKSLEKANLPSRLVSKGDVLDSQTAKNVQLFLECLAHPT 632

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
            +      +  S L  +  + I          E +            ++ Q+ I  I  L 
Sbjct: 633  NTSIIKLLACSSLMQWDINKINACEQNGEIDEVII-----RCVDWANRLQN-IGLIGCLS 686

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEF-----LNFTLRNEQNSYS 545
             +    +         G   G  Q  +    E   I  LD       L+      ++   
Sbjct: 687  ELLGSKNLAMLSKQ--GRMLGDLQQCADLVQEAIHIKGLDALGAARWLSQQRSFSRDPTP 744

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
                          + +         + ++T+H +KGL+  VV         +    +  
Sbjct: 745  -------------ESRRPNSDIAEKAINVITIHRSKGLQYKVVICPYL----WQSPPLPN 787

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +    N +     W+    +      ++++     + EE  RL YV +TRA  +LII 
Sbjct: 788  GPLWCIKNSNE----WLISLNTGWGGSRNILEAAINESIEESERLAYVALTRAQKKLIII 843

Query: 666  K---------------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
                                S+E    + T   M+      +  +K   +        W 
Sbjct: 844  WSMASRQENNPLLNLLFGKESHEYNRQELTQETMIKWLNSTNGTIKIHTIEALEELRVWK 903

Query: 711  AYEWSTHHPENTPLER-------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
                +         +R         +    +  +          K               
Sbjct: 904  RSGKNIPLKIGPSPKRLLDKSWGRHSYSAWLATKNGHHDFLQNPKAIEEGKDTAQDEVSS 963

Query: 764  TKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTK 811
             +   N+ + LS             +    G  +H++LQ I   +P +  +         
Sbjct: 964  KESSLNIHTGLSIDPYEQSPLAIFPRGPLAGDCLHRILQRIDFKIPANSLETTGLIDEEL 1023

Query: 812  NAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEVSVSGKINCPKKDI- 862
                       N+  ++ RLL  P         +    +    SE+S    ++   + I 
Sbjct: 1024 KKSGIDESLNNNIQEALGRLLSIPLGSSLGNFQLNQLNTNQRISELSFDLSLSINGQPIT 1083

Query: 863  ---------------------------------IISGRIDQISISQQ-----NIFIFEYK 884
                                              ++G ID + I +        ++ ++K
Sbjct: 1084 SSDIAEIFKINPDHRFGGEYSELLQELNISSRGFLTGSIDLVFIDKDDPEDARWWVTDWK 1143

Query: 885  THHHVPQEIEHIP-------------------YTHIAQLSIYEKILKD 913
            ++    +  E                      + +  Q  +Y   L  
Sbjct: 1144 SNWIGDRYQERQIFNCSPIHYVDKAMECQMKMHHYPLQAHLYLVALHR 1191


>gi|113866335|ref|YP_724824.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16]
 gi|113525111|emb|CAJ91456.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16]
          Length = 699

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 188/669 (28%), Gaps = 115/669 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL--QQASQTQ 60
            R    +    E I                ++       G   + + A+TL    A    
Sbjct: 80  RRAAAEMGRRVERIVDQALGTQTGAGRAALQWSGTFHAIGARLLREYAETLGLSPAFTIS 139

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              +   L+         +   +   ++  +    +  ++  +Q     +  +      F
Sbjct: 140 DRGDAADLMHVVRHDLGLSETASRFPKK--ETCLAIYSRVVNTQAPLEDVLKQ-----QF 192

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                     + L A Y EAK+K  VLD++DL++     + +  ++      +    +H+
Sbjct: 193 PRYAMWADALRTLFAGYVEAKQKQHVLDYDDLLLYWAQAMAEPTIAQD----MGARFDHV 248

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++ ++              R L  VGD+ QSIY+F GA  + +L  
Sbjct: 249 LVDEYQDTNALQASILLAM----------RPDGRGLTVVGDDAQSIYAFRGATVRNILDF 298

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            + L  ++RST  IL   + V  +          S        +
Sbjct: 299 PAQF-------TPAAQQVTLSQNYRSTQPILQAANAVIGLAAERYTKDLWSER------A 345

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
              + G + +                             +  +  AR +   +       
Sbjct: 346 SAEKPGVIVV-----------------------------NDEADQARYVVEQVLARREAG 376

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                            VL R    +  +            I  V        +   +KD
Sbjct: 377 LTLMAQ----------AVLFRAADHSAQVEIEL----ARRNIPFVKFGGLKFLESTHVKD 422

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            +A+ R++ +  D ++    L+  L         ++             +++F     + 
Sbjct: 423 ALAVVRWLENPRDRMAGFRTLQ-LLPGIGPKTAARVLDALALATEPLFSLEQFEPPPAAA 481

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                        +A        F  +L       + +          L +         
Sbjct: 482 PAWADLLALARALMAPTSPWPSEFEQVLAWYAPHLERLHDDAAARQADLQQLERIAATYG 541

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                 L EL  +            S + + + + T+H+AKG E   V++++        
Sbjct: 542 ARE-RFLTELTLDPPSASSDESGVPSRDEDYLILSTIHSAKGQEWKAVYVLNAVDGCMPS 600

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              +        EE  RLLYV MTRA D
Sbjct: 601 D----------------------------------LATGTTEEIEEERRLLYVAMTRARD 626

Query: 661 QLIICKHSN 669
            L I     
Sbjct: 627 HLDIVVPQR 635


>gi|203288066|ref|YP_002223081.1| exodeoxyribonuclease V, beta chain [Borrelia recurrentis A1]
 gi|201085286|gb|ACH94860.1| exodeoxyribonuclease V, beta chain [Borrelia recurrentis A1]
          Length = 1147

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 128/851 (15%), Positives = 270/851 (31%), Gaps = 121/851 (14%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + +Y+    E       V+D + ++ N    L+  +    +   I      ILIDE Q
Sbjct: 308  YKILQYIEKELENIINTTNVIDQKHIMTNFKKHLESSEHK--LLTSIKNRHKIILIDEAQ 365

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D    Q ++   L          +S    +  + D KQ IY+F  A+            +
Sbjct: 366  DLDQTQIKIFELL----------NSCGIKIVFIADPKQIIYTFRNADISF-------YNQ 408

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               +  +K + I L  ++RS   ++  ++ +F                  +  +   ++ 
Sbjct: 409  GIKDKIKKDARITLLTNYRSNKKLVKPLNIMFERI---------------YNKTHTDKIE 453

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             ++  +      +               ++ Q      + ++ A  I  ++    I+ N 
Sbjct: 454  QIEFVQLQTEPKNDNNKIFINDQEIKAINIIQAEENDNVFQKTALIIKYLLINGKIYDNN 513

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            + R I+  DI VL R  K+   I    +       I      +          ++  L +
Sbjct: 514  QPRQIEKSDIKVLCRTSKEINFIDRELK----KNNIKTH-KTKEPFFKTKEFNEIFYLVK 568

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +  ++D  +   +L S + N   +    +         + E I        ++   +++
Sbjct: 569  CLSKKQDFKTLNYVLTSKMINLPWELHLNLIQNNKIK-NIEEAISDIIYLLENQEITLMQ 627

Query: 487  YIHE-------LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
             I E        I++ +  +  +F       +  ++  I+    E +   +  LNF L+ 
Sbjct: 628  AIDEIISKQDLWINLVKDLNNDEFTKFAQSKQNYKENLINENKFEELQNYESSLNFILKT 687

Query: 539  -NEQNSYSSLQELISELEQYPPTIKRAHSANH-----NEVRIMTVHTAKGLESPVVFLVD 592
              +  +  SL  ++ +L                      + I+T+H +KGL   +VFL+ 
Sbjct: 688  YYKDKNIESLICILEDLILGRDIENIEQYEEQTNNDNQSIEILTIHKSKGLGFNIVFLIG 747

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                  +      +     LN+         + K     + +  +  K     E   + Y
Sbjct: 748  DTQNNDTLIKKTDIFYKYYLNN---------KIKYDFLKLKENQQLAKNKILNEEKNIFY 798

Query: 653  VGMTRASDQLIICKHSNTSNE--KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            VG TR+   L I       N+  + +   T   +  +    +         + IN D+  
Sbjct: 799  VGTTRSKFALFIINQGTIINKMLRSAEINTIDGINLNFNIPNLNNYNQYNQSDINNDQQK 858

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
            A       P N  L R+E I            +   I +D            +T     +
Sbjct: 859  AITLIPPPPINKYLFRQEYIHSYTSLTSSYNTVNQNITDD------------ETYDNDAI 906

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI---------TSYCTKNAKLWPAKEY 821
             +  +  +  + G I+H++++ I         +                 N+KL      
Sbjct: 907  HNKNTLPKGKDIGNILHEIMKDINFNDAKDSLSNFKKNNSMLVQQKIEYFNSKLNTPMIQ 966

Query: 822  KNLLLSITRLLE------NPMMTTAMSCDSYSEVSV-----------------SGKINCP 858
            + L+  I  +L       +  +      +   E+                     +++  
Sbjct: 967  ELLIKMIYNMLNKKINFIDTKLCEI--QELQKEMEFLIKINTKIYKQMSLFKQYNRLDFM 1024

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEK 909
              +  I G ID I      I+I +YKT++      ++             +  Q  IY  
Sbjct: 1025 LNNGYIKGIIDLIFKINNKIYILDYKTNYLGENLQDYRLSHLTKKMKQENYDLQYKIYTL 1084

Query: 910  ILKDS-YPNKS 919
             +K   + NK 
Sbjct: 1085 GIKKILFKNKE 1095


>gi|289582057|ref|YP_003480523.1| UvrD/REP helicase [Natrialba magadii ATCC 43099]
 gi|289531610|gb|ADD05961.1| UvrD/REP helicase [Natrialba magadii ATCC 43099]
          Length = 1194

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 139/1043 (13%), Positives = 286/1043 (27%), Gaps = 191/1043 (18%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
            L  +E    +   +  L       IN   +  M      +  +   L +  + +    +F
Sbjct: 202  LPSDEDLRDLLGLVTDLEEMAHQVINVDANGIM-WDAEALADRCDRLPRVYRAK--ASQF 258

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL-- 124
                          +    T E        + +L+       +         +   T   
Sbjct: 259  DGDGRVHSAVSAHLEAMAETAENMADHLRTESELEWQAFRLPEAMFEGERGPLTSITQTP 318

Query: 125  --------ASLTLAKYL---NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                      L  A+        Y EA  +    D+++LI  T DLL+   V   I  + 
Sbjct: 319  MGRLSNYVHMLRRARAFVGAYEAYLEALDERNAFDYDELIHRTVDLLRDERVRDDILAEW 378

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            D     +  DE QDT   Q E++  L                +  VGD  Q+I+ + G +
Sbjct: 379  DA----VYCDEFQDTDESQLELVEEL-----------RDGLDIMVVGDSDQAIHEWRGQD 423

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            P+ + +     ++           I L L+FRS   IL +                    
Sbjct: 424  PENMSKLPESFEE-----------IGLDLNFRSRQPILDLA------------------- 453

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                   +       +     V   DS+                          +++ TI
Sbjct: 454  -TNLDPDKDEIEAYKEPNPPSVVTVDSEGERTP--------------------AQVSTTI 492

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            S+++         +    + +DI VLVR+ ++   I        +   I    +      
Sbjct: 493  SHLLTGRFEDVPER----ELEDIAVLVRRNQNARDIASQL----DRDSIPYTLSSDASGE 544

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
                ++ +++  R ++   DD+S+  +L   L+   E D+  +          Y+ + + 
Sbjct: 545  LGHGVRTVLSYFRVLVEPGDDVSWQRVLL-HLYRVPEGDVDTLLRAGETVPAGYDALAEP 603

Query: 474  ANC--GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            A       +    +     L  ++   +  + +      +     F+     + +  ++ 
Sbjct: 604  AAELRCPDRVHEALTDYKTLRSVSDTHAISELYRH-FKRETRIDWFLREHDRDALANVER 662

Query: 532  FLNF------TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             +                   L+     L     T     S + + V +MT+H AKGL+ 
Sbjct: 663  LIEAFNDSPVQSELTPAFVDYLERQAHLLSADDETATSPGSQSADAVDVMTIHQAKGLDF 722

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
              V L       F H       I  +          I     +  +   L          
Sbjct: 723  DTVLLPFLTESEFGH-------ITLANYQRDLYRYDILVDDVQGELADPLRADCSDDQIA 775

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E  R+L+V +TRA + L +  +        ++    +     S        +    +  N
Sbjct: 776  EEWRVLHVALTRAKEHLFLFGNDVEEQGPGADMLDDHLPSERSETPIHWSAEGPRFSVWN 835

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                   E +   P+      +   + + ++        + +  D     +L  +     
Sbjct: 836  ALMDSYDEIAADTPDAVRDYTDAVNRGVDEDPGTITYYQTEVSTDEALETVLEFADEVVA 895

Query: 766  GKTNLESLLSDNQTFNR-----GLII---------HKLLQVI----------------FT 795
            G        +   T        G  +         H  L+ +                  
Sbjct: 896  GTLADGDSAASPNTARFADAPLGTSVDVELARQHSHTALESVRNCERKHVLDHVVDAFPD 955

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYK---------NLLLSITRLLENPMMTTAMS---- 842
                       +     +      E               +   +  +  +TTA+     
Sbjct: 956  PTPATGGEAEVTQADVGSLFHDVAELAYWRGYDSKTEWREACEWVARSRDLTTALEPALE 1015

Query: 843  -------------CDSYSEVSVS----------GKINCPKKDII-----ISGRIDQISIS 874
                             +EV ++          G I      I      I G +D +   
Sbjct: 1016 CIDRYFETDVPEWPAVGAEVPIAVDGDEIAEVNGDIAAVDDGIAAIEGDIIGYVDSVRRH 1075

Query: 875  -QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV--SEPK 931
                + + +YKT                 QL +Y +  +D +         +YV  + P 
Sbjct: 1076 PDGGLVVLDYKTSQAQKDLETSH------QLELYVRACRDRFDEPLSHAGYVYVGDAGPA 1129

Query: 932  VFIIPQNKL----NKAFAEISTK 950
            V +   ++L         +++T 
Sbjct: 1130 VQVFSVDELATLWESVLEDLATA 1152


>gi|319791122|ref|YP_004152762.1| uvrd/rep helicase [Variovorax paradoxus EPS]
 gi|315593585|gb|ADU34651.1| UvrD/REP helicase [Variovorax paradoxus EPS]
          Length = 705

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 101/679 (14%), Positives = 204/679 (30%), Gaps = 146/679 (21%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKY-------VSLSMETGNPTILKKAQTLQQ 55
            R    +      +   +  L   +   +            L  E      L +  T+  
Sbjct: 88  RRAAQEMERRAGQVLAKVLGLKSERPPALPWAGTFHGIGARLLREYAQQIGLDENFTIHD 147

Query: 56  ASQTQCIEERFSLLSSFFLTQKFTPQK----NIITQEINKKSPDLKEKLKKSQDEFIKIR 111
               + +            T    P+K    +I ++ +N ++  + E LK++     +  
Sbjct: 148 RGDAEDLMGLVRHELGLSSTVNRFPRKGTCLSIYSRCVNTRA-SVAEVLKEAFPWCGEWE 206

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
               T                L   Y EAK++  VLD++DL++   +++ +  ++  +  
Sbjct: 207 AELKT----------------LFGAYVEAKQQQNVLDYDDLLLYWAEMVAEPALAEAV-- 248

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                 +H+L+DE QDT+L+Q  ++ ++              R +  VGD+ QSIYSF G
Sbjct: 249 --GARFDHVLVDEYQDTNLLQASILLAM----------KPDGRGVTVVGDDAQSIYSFRG 296

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L       +       +  ++ L  ++RST  IL V ++V +        +  +
Sbjct: 297 ATVRNILDFPSQFSR-------EARVVTLERNYRSTQPILDVSNRVIAQAAERHAKTLWT 349

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                      G+   V +                                +  AR +A 
Sbjct: 350 DKP------SAGKPQLVLV-----------------------------PDEAGQARWVAD 374

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +                 +  K   VL R    +  +            I  V      
Sbjct: 375 KVLAHREGG----------LALKSQAVLFRTSSHSAALELEL----ARRNIPFVKFGGLK 420

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
             +   +KDL+A+ RF  +    ++   +    +         ++     +       ++
Sbjct: 421 FLEASHVKDLLAVLRFAENPRGRMAGFRV-TQLIPGIGPVTGTRLLDAMDQAADPAAAVR 479

Query: 472 KFANCG--ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            F        ++    +    L   +    P D    +       ++            +
Sbjct: 480 DFVPPSAAREQWAGFAEAYAALRAPS-LAWPADVELAMGWYLPHLERLYDDTSGVRRQDV 538

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLES 585
           ++ +            S +  ++EL   PP            + + + + T+H+AKG E 
Sbjct: 539 EQLVRLAAGY-----GSRERFLTELTLDPPEATSDRPGPPLLDEDYLILSTIHSAKGQEW 593

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V +++                                                    E
Sbjct: 594 NSVHVLNVVDGCLPADV-----------------------------------AQSAHELE 618

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV MTRA D L +
Sbjct: 619 EERRLLYVAMTRARDHLHL 637


>gi|145633194|ref|ZP_01788925.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 3655]
 gi|144986040|gb|EDJ92630.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 3655]
          Length = 850

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 99/583 (16%), Positives = 203/583 (34%), Gaps = 65/583 (11%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +  +     SP +     + ++    +       ++           + L     + K
Sbjct: 313 SALGEKCEEGASPFIAPIFTELEERANALISPDLLRRII-----LYHYCQSLQQKLLDYK 367

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
             +    F+DL+    + L+       +   I  +    +IDE QDT   Q+ +   +  
Sbjct: 368 LNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAMIDEFQDTDSQQYAIFSKIYR 426

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           D                +GD KQ+IY F GA+    L+     Q R            L 
Sbjct: 427 D------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKASDEAQSRFE----------LT 470

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS   ++  V+ +F  P++         T +  R             + +    + +
Sbjct: 471 KNYRSEKHLVDGVNALFDFPQSPFIYQNIKFTAVDSR------------DDHLRFYLNGK 518

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF-SNGKKRVIQAKDILVLV 380
             P    + +  D + +   A I A  I Y + + +    +F +    + +QA +I VLV
Sbjct: 519 AEPAYRFYLTESDKVNKTEMAKICAVSIQYWLKSAVENQAVFQNEDTYKTLQAANIAVLV 578

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R + +  L+    + L      SV  +D+  + D    K+L  + +  L+   +   +  
Sbjct: 579 RDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKELAWVLKACLNVA-ERPILNA 634

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           + + LF  +  DI +I           E   +      +++Q   +    L+ + Q    
Sbjct: 635 IATALFGLNAADIHQIQQN--------EADWQRWADSFAQYQQTWQRQGILVMLHQILLE 686

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPP 559
                 +L    G +             L E L       ++  + L     +++ +   
Sbjct: 687 QGISERLLSQATGERDLTDFL------HLAEILQQAATLHESEAALLSWFEKQIQGEGRQ 740

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             +    +    V+I+++H +KGLE  +V+L               +        D  + 
Sbjct: 741 EAQIRLESERQLVKIVSIHKSKGLEYDLVWLPFLA-----------VPSKIPTAGDMNVY 789

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
               + ++  +I +  +  L + T  E  RLLYV +TRA  Q+
Sbjct: 790 YSKERDETLWDIENRNLNALCEETFAEELRLLYVALTRAKYQM 832


>gi|310827141|ref|YP_003959498.1| hypothetical protein ELI_1549 [Eubacterium limosum KIST612]
 gi|308738875|gb|ADO36535.1| hypothetical protein ELI_1549 [Eubacterium limosum KIST612]
          Length = 1065

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 110/644 (17%), Positives = 196/644 (30%), Gaps = 143/644 (22%)

Query: 43   NPTILKKAQTLQQASQTQCIEER-FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK 101
            N    +  + L++    +   +       S         +      +  +     +E ++
Sbjct: 517  NKAAAEMRERLEKVLGKRSARQVNIGTFHSLCHKLLKEHRGGFTLADAFETLETAEETIR 576

Query: 102  KSQDEFIK---IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
                       +++              L+ A     +Y +  K   VLDF+DL+  T  
Sbjct: 577  HFGLSLSAKQFLKEVSLMKTGLSKGSGILSEAA--FDYYGQQLKALSVLDFDDLLSETLV 634

Query: 159  LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            +L+  D ++          + +L+DE QD S IQ+E+I++           +   + LF 
Sbjct: 635  MLEDEDKNSI----RKNHYSFLLVDEFQDISPIQFELIKAW----------NRGGKELFV 680

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            +GD  QSIY F G++ +   R              +   I L  ++RST +I+T   +V 
Sbjct: 681  IGDPDQSIYGFRGSDARCFDRLSADYP--------ELQTIRLVHNYRSTPEIVTSACQVI 732

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
            +  E A+                       ++          +        +        
Sbjct: 733  NHNEGAKR----------------------EIQPFQSKGTPLKLVSAPSELSEGI----- 765

Query: 339  ESSASILARRIAYTISNMIGTDTIFS-------NGKKRVIQAKDILVLVRKRKDTPLITF 391
                      IA  I+ +IG   +            + +    DI VL R  K       
Sbjct: 766  ---------FIAREINRLIGGIDMLDTETADNRQDSQTMRSFSDIAVLYRTHKQA----E 812

Query: 392  LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
            +         I  V   R        ++  +   R +L  ED LS + M    L++  E+
Sbjct: 813  MLETCLKKEGIPYVITGRDDFLTDRNVRGTVCFFRTLLDPEDQLS-LRMCLKLLWDLPEE 871

Query: 452  DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                +     + +T             SK +                 P           
Sbjct: 872  TADILIKTPDQIDTSRCPYGYLKEKYQSKTKRT--------------KPQKLLE------ 911

Query: 512  KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---EQYPPTIKRAHSAN 568
                 + +  G        +FL+ T+        +L E +  L   E+            
Sbjct: 912  ----DWAAELGLNESKAFTKFLDMTVFY-----KTLAEFMDTLTFGEEGDLKRSANKVYT 962

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             + V +MT+H +KGLE P+VFL      +   +  K                        
Sbjct: 963  SDAVTLMTLHGSKGLEFPIVFLYGAKKGIMPLEIGKLPS--------------------- 1001

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                            +E  RL +VGMTRA D+LI+   S  S 
Sbjct: 1002 --------------DIQEERRLFFVGMTRAKDELILTTSSEPSP 1031


>gi|148239844|ref|YP_001225231.1| exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803]
 gi|147848383|emb|CAK23934.1| Exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803]
          Length = 1229

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 107/903 (11%), Positives = 229/903 (25%), Gaps = 170/903 (18%)

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL--KKRDVS 166
            ++                  L        ++ +++  V+ F  L+    D L       S
Sbjct: 343  ELMRAIAELWDGPGEQTWRYLLIRGLQEIDQRRQRRGVVGFSGLL----DALNPTDPSRS 398

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                  + +     LIDE QDT  +QW ++              SS   L  VGD KQ+I
Sbjct: 399  QAWITALRERYKVALIDEFQDTDPLQWNLLHQCFA---------SSDHLLLMVGDPKQAI 449

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F G + +     +           Q   I +L  + R+T  ++  ++ + S       
Sbjct: 450  YRFRGGDLQTYKTARA----------QVDRIDDLLDNRRTTPPLMEAMNHLMSPGLKHSE 499

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            LS  + +                           +  P Q    +  D+    S   + A
Sbjct: 500  LSVPAVSAKA---------------SCTPLTLPPETAPLQILAFNPDDADGSRSRTDLEA 544

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              I    ++++    +   G    +   D  +LV + +         R   +   +    
Sbjct: 545  T-IPCFAADLL----LQILGNDASLTPADFCILVSRHRQA----EAIRDQLSKVGLPSRL 595

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                 +       +L      +    D+     +    L  +    +             
Sbjct: 596  ISPGDVLSSQGAGELQWFLDGLARPADNERLRRLAAGALMQWPAHTLE------------ 643

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG-----AKKGRQQFISRF 521
                   A     +       +  L               +L          R + +   
Sbjct: 644  -------ACEQTGQLDLFAAKLQTLAEALPRLGLMGCLAQLLEGETLADLSIRGRLLGDL 696

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                  V D      L     +    ++ +   +  P   +       + V ++TVH +K
Sbjct: 697  LQCARLVQDAMHRQGLNAAGGADWLRRQRLHPPDNVPDQRQPYSDLAASAVAVVTVHRSK 756

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ PVV            K                + +                     
Sbjct: 757  GLQYPVVICPYLWEAPSPGKGPLWRLPAGDPTGSWRVALNPHW-----GSGQAAACADAL 811

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RL YV +TRA   L++      +    +    W   + D  H    +   +  
Sbjct: 812  DCMAEAERLAYVALTRAERHLVLFSAGEANPS-GNPLDPWLSALADGNHPHISLHHPRSP 870

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK------------- 748
             +  +        +           + +  +      I                      
Sbjct: 871  AAHQRWTPPRQNQTLQCAPVPKGALDRSWGRSSYSAWIASASNHHPSKRSNPHELEEGRD 930

Query: 749  -------NDINEPYILNPSTIDTKGKTNLESL----LSDNQTFNRGLIIHKLLQVIF-TL 796
                   + + EP +   S ++ +    L        +  +  + G  +H++L+ +    
Sbjct: 931  VDAGTDTSSLREPAVGLSSDVERELGDALPPRNGALRTFPRGASAGDCLHRILEQLPFDQ 990

Query: 797  PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSE 848
            P  +  N        +          ++L +I+ LL +P         +    S     E
Sbjct: 991  PVEQPANQELVARELSRSGLDLSLQDDVLSAISTLLRSPFGGPLGQLRLADLHSGRRLHE 1050

Query: 849  VSVSGKINCPKKDII----------------------------------ISGRIDQISIS 874
            +S    +      +                                   ++G ID +   
Sbjct: 1051 LSFDLPVAHAGSAVRASTLARAFRCDPKQRFGSDYAAQLETLDIHSRGFLTGSIDLVFTD 1110

Query: 875  QQ-----NIFIFEYKTHHHVPQEIE-------------------HIPYTHIAQLSIYEKI 910
                     ++ ++K++    ++ E                    + + +  Q  +Y   
Sbjct: 1111 GDDLSTARWWVADWKSNWIGERDGEGQPLHCGPRHYTQAAMEEQMLQHHYPLQAHLYLVA 1170

Query: 911  LKD 913
            L  
Sbjct: 1171 LHR 1173


>gi|313847563|emb|CBY16551.1| putative UvrD/REP helicase [Chlamydophila psittaci RD1]
 gi|325507206|gb|ADZ18844.1| exodeoxyribonuclease V subunit beta [Chlamydophila psittaci 6BC]
 gi|328914196|gb|AEB55029.1| exodeoxyribonuclease V, beta subunit [Chlamydophila psittaci 6BC]
          Length = 1045

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 142/916 (15%), Positives = 271/916 (29%), Gaps = 160/916 (17%)

Query: 43   NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
                L++A    ++ + Q       LLS             +++     ++   K +L +
Sbjct: 232  KENFLEQALKYTESFKKQPFSITEDLLSFVDHLYASETSVRLLSFSKIAETFHPKNRLAR 291

Query: 103  SQD-EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDL 159
             Q        +  + ++  +      ++   L    +   K +    L  ++ I+   +L
Sbjct: 292  YQPCHAFSYIEETSWFQDTEQFCNVDSIFNTLLHDLQLYLKNHYTWWLSPDESIVTLEEL 351

Query: 160  LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            L+    +  +   + +    ILIDE QDT   QW +   L          +    +LF +
Sbjct: 352  LRSSQ-AEEVIKSLRKRFQLILIDEFQDTDRKQWNIFAKLFA-------HNDFSGSLFLI 403

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD KQSIY +  A+    L+ K    K         S + L  ++RST  ++  ++ +F 
Sbjct: 404  GDPKQSIYEWRNADLVTYLKAKSTFPK--------TSQLHLINNYRSTPQLMQAINILFC 455

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                   +                            S++            SY + L Q 
Sbjct: 456  KCSPFLEIPGYE-------------PIEYHSLTPQSSEYFDNSQHAPIHLFSYDNVLDQ- 501

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                  A  I         + T         I    + +LV               L   
Sbjct: 502  ------AAWI---------SQTASHLQATHGISFGRMAILVSDSAQAFD-------LITH 539

Query: 400  YKISVVGNDRFILTDHLAIKDL-MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I V  +    +        L +A    IL  E+      +L S LF     DI +   
Sbjct: 540  CSIPVSFSKNKSIFHLTETYLLTIAWLEAILYPENYEKIQRVLLSSLFRHDLTDILE--- 596

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
             + E  + Y +  +                        F + H     +L   +G     
Sbjct: 597  -KKEHYSSYFFSLRSYIFDHGLLATFY----------HFMTLHG--EALLKTPQG----- 638

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                 + ++ L  +L       Q+    LQ               ++S +   ++I T+H
Sbjct: 639  -DLTFQEMERLCAYLGTLSSQPQHQLLYLQYFSETGRWEENLSFSSYSEDTEILKITTIH 697

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE  VVF                                               K 
Sbjct: 698  ASKGLEYDVVFCPGLD------------------------------------------KS 715

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             K  +  E+ R +YV  TRA  QL I        +   N R    +             +
Sbjct: 716  KKNKSSSEWIREMYVACTRAKKQLFIPF------QTSLNSRRNTALTNYVKQEGSYASIL 769

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM----DEQKIPKKLFSPIKNDINEP 754
             L  +++K+    +  ST H ++   E    +              +         + + 
Sbjct: 770  DLAQNLSKEHPSLFSLSTTHRQDPSTEPIYNLTPPSTFVLSPYPTKQIFSFSSVKTMLDN 829

Query: 755  YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---FTLPEHKRKNFITSYCTK 811
             +L  S I+    ++        +    G+IIHK+L+ I   F +P  K    ++ +   
Sbjct: 830  EVLVDSDIENPSISSAL-----PKGRKTGIIIHKILENISPNFKIPISKILTTVSHFVKN 884

Query: 812  -NAKLWPAKEYKNLLLSITRLL----ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG 866
             + + +     + L  +I+  L     +  +         SE +         K+ +  G
Sbjct: 885  THLEGYEEMIAQKLFSTISSPLSFTSASFALKDVCPDKILSEEAFL----FSNKEQLWQG 940

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---THIA------QLSIYEKI----LKD 913
             ID         +I ++KT        ++       +I       Q +IY       L+ 
Sbjct: 941  AIDLFFEYNGKYYIIDWKTSFLGETTSKYSQENLFAYIKEHNLDYQGAIYIHAAKRFLQQ 1000

Query: 914  SYPNKSLVCLLIYVSE 929
                  +    +++  
Sbjct: 1001 FDITSDVEMGFVFIRG 1016


>gi|224539625|ref|ZP_03680164.1| hypothetical protein BACCELL_04533 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518716|gb|EEF87821.1| hypothetical protein BACCELL_04533 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 916

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 105/669 (15%), Positives = 214/669 (31%), Gaps = 59/669 (8%)

Query: 74  LTQKFTPQKNIITQ---EINKKSPDLKEKLKKSQDEFIKIRDR----FNTYKMFKSTLAS 126
           L       KN  T+     N      +  L     +    R R     N+ ++    L  
Sbjct: 280 LKNSLDDAKNWATKTSPRKNDIIHLAETSLLPLLQDAETFRPRNNKTVNSCRLSLQHLNK 339

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILID 183
           L L  +++    E  +++       L+ +TN LL    +   S+++  KI   I +++ID
Sbjct: 340 LQLLAHIDEEVRELNREHNRF----LLSDTNALLHNLVRDGDSSFVFEKIGANIRNVMID 395

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDTS +QW+  + L  +                VGD KQSIY +   +   +      
Sbjct: 396 EFQDTSRMQWDNFKILLLEGLS------QGADSLIVGDVKQSIYRWRNGDWGILNAL--- 446

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
              + T       +  L  + RS  +I+   + +F+       +          R  +  
Sbjct: 447 -GTKETPIPYPVRVETLKTNRRSETNIIRFNNSLFTAAVEYLNMLHLKELQEDCRPLQQA 505

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                      V Q   +   +     ++ +   +     +    +   +  ++      
Sbjct: 506 YA--------DVEQESPRTEAKGYIKATFLEPDEEHDYTELTIISLGEEVQRLLAAG--- 554

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                  ++  DI +LVRK K+ P I            + +V ++ F L    A+  LM 
Sbjct: 555 -------VKLNDITILVRKNKNIPPIADYF---DKTMHLPIVSDEAFRLNASQALCMLMD 604

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
             R++ + +D ++   ++ +     + ++      +        ++     +        
Sbjct: 605 ALRYLSNPDDKVTRASLIINYKLQITNENKEGRMEKEGANAPETKWDDILTSRPEDVLPE 664

Query: 484 -VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             +  I  L         ++    +         F      E    L  F +      QN
Sbjct: 665 AFVNRIEPLR----LMPLYELLEELFSL------FEMNRIKEQDAYLFSFFDAVTEYLQN 714

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           + S L   I   ++     K   S   + +RI+++H +KGLE   V +     ++ +  +
Sbjct: 715 NSSDLDVFIRYWDET-LCNKTIPSGEMDGIRILSIHKSKGLEFHTVLIPFCDWKLENETN 773

Query: 603 IKKMHIMPSL--NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            + +   PS        I      S    ++      + +     +   LLYV  TRA  
Sbjct: 774 NQLIWCSPSESPFSALDIVPVNYSSTMAESVYRQEYLNERLQLWVDNLNLLYVAFTRAGK 833

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            LI+                    V     N+   ++    + I      +   +T    
Sbjct: 834 NLILWSKKGQKGTMSELLANALPHVASQEGNENWDEEEPYESGILCPSEDSKPTTTAQTS 893

Query: 721 NTPLEREET 729
              L ++  
Sbjct: 894 VNRLAQKPD 902


>gi|118470846|ref|YP_886307.1| helicase, UvrD/Rep family protein [Mycobacterium smegmatis str. MC2
           155]
 gi|118172133|gb|ABK73029.1| helicase, UvrD/Rep family protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 1045

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 107/918 (11%), Positives = 255/918 (27%), Gaps = 162/918 (17%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
            + T     +  DL  +  +   + I ++    T K  +        A      YE+   
Sbjct: 151 ALTTAGFATELRDLMARCTERGVDPIALQRLGRTAKRPE-----WLAAGRFAQAYEQIML 205

Query: 143 KNCVLDFE------------DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
               +               +L+    + L   D    +       I  +L+D+ Q    
Sbjct: 206 LRSAVGMAAPQATVPALGAAELVGAALEALGADDE---LLDTERNRIKLLLVDDAQHLDP 262

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
                     +   + +   +        GD  QS++ + GA+P  +             
Sbjct: 263 ----------QAARLVRALAAGTGLTVIAGDPDQSVFGYRGADPVLLRD----------- 301

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  S+R   +I + +  +        G      +  RH +    + GTV +
Sbjct: 302 --DTHPAITLTQSYRCAPEIASAITGL--------GQRLPGVSDTRHWTGNPQREGTVTV 351

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                +  +                                 I++ +    +        
Sbjct: 352 RLAASTHAEGTM------------------------------IADALRRAHLVD-----G 376

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFIL 429
           I    + V+VR     P +            + V  N     +    A   L+ +     
Sbjct: 377 IPWSQMAVIVRS---VPRVGTALARALTAAGVPVQDNGTDVPVGRQPAAAALLTVLDVTA 433

Query: 430 SQE-DDLSFVCMLKSPLFNFSEDDIFKICTQ----------RHETETVYEYIQKFANCGI 478
           +   D  S V +L  P+       + ++             R   + + + I++      
Sbjct: 434 TGHLDADSAVALLTGPIGRVDPVTLRQLRRALRRADGSQPPRDFGDLLVDAIEREPKGLS 493

Query: 479 SKFQHVIKYIHEL-----IHIAQFCSPHDFFTLILGAKKGRQQFIS------RFGNEVID 527
           ++    ++ +  +        A    P         A   ++++++        G +   
Sbjct: 494 AEHARTLRRLRAVLTAARRSDASGADPRYTLWQAWHASGLQRRWLAASERGGSVGAQADR 553

Query: 528 VLDE---FLNFTLRN-EQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKG 582
            LD      +   +   + + +SL+ L+  +        +         V +++VH A  
Sbjct: 554 DLDAVTTLFDVADQYVNRTAGASLRGLVDHVTRLGAAVARTEPETAAEAVAVLSVHGALA 613

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            E   V +      ++ +   +   +      D    +     ++ +          +  
Sbjct: 614 GEWDFVVIAGVQEGLWPNMIPRGGVLGTQHLVDVLDGVADMTDRTVST---------RAP 664

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV-YDSFHNDERVKKIKLT 701
              E  RLL   M RA  +++I    + + ++      +   +   +         +   
Sbjct: 665 LVAEERRLLMAAMGRARTRVMITAVDSDTGDESLLPSPFCAEISAWATEPVAEPPLVAPR 724

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ--------KIPKKLFS-------- 745
                            P+    +           +          P +  +        
Sbjct: 725 VLAPSALVGRLRAVVCAPDGAVDDDARACAAAQLARLAAAGVPGADPSQWHAMTSLTTEE 784

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT-------FNRGLIIHKLLQVIFTLPE 798
           P+ ++      L+PST+       L  LL  +            G ++H L+        
Sbjct: 785 PLWSEPGHVVTLSPSTLQMLTDCPLRWLLERHGGDDGRDVRSTVGSLVHALVSEPGKTES 844

Query: 799 HKRKNFITSYCTK--NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
                    +     +AK +   E       +         T     +  +E+ V G + 
Sbjct: 845 QLVNELEKVWDDLPYDAKWYSDNELARHRAMLETFTRWREDTRRQLTEVATEIPVEGIVV 904

Query: 857 CPKK---DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            P +    + + GR+D++   +   + + + KT      + +       AQL++Y+  + 
Sbjct: 905 EPGENTPGVRVRGRLDRLERDEAGRLVVVDLKTGKSPVTKDDAQN---HAQLAMYQLAVA 961

Query: 913 DSY---PNKSLVCLLIYV 927
                  ++     L+Y+
Sbjct: 962 AGLLDDGDEPGGGKLVYL 979


>gi|315656388|ref|ZP_07909277.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492947|gb|EFU82549.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 1191

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 118/808 (14%), Positives = 239/808 (29%), Gaps = 68/808 (8%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDEFIKIRD- 112
            A  T+   E    L +  L+       +++   E+ +         K+ QD      + 
Sbjct: 194 GALGTKREGENAENLVNILLSLANDTNSHLVDLAEMKQTYRSYLAAAKRLQDAEGADLNS 253

Query: 113 -RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                      T+     A  +   + E K++  + DF D    T  L+++    + +  
Sbjct: 254 TALRNLDTIIDTMEFGCNATNVIQAFNERKRELLMADFSDQTRETVRLVEQ---LSAVGE 310

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
              +    + +DE QDTS+ Q   +  +  D             + AVGD  Q+IY + G
Sbjct: 311 SQRERFQLVFLDEFQDTSVAQMRFLAGIFRDCA-----------VTAVGDPNQAIYGWRG 359

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A    +     I                L  S+R+ A ILTV +++ +    A       
Sbjct: 360 ASAASMEDFGSIFCTDPHQ----LLTRTLSTSWRNDAVILTVSNRISAELAGA------- 408

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                  ++         +   +     ++                Q  +    ++ +  
Sbjct: 409 ----PAVAAERNIPRNQDVQPAISKPLQARPGANPGIVYGI-----QTLTDLQQSQAVVN 459

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                        +      +     VL R +   P +    R       I         
Sbjct: 460 FFRLWQAQRVKLQSEGVPAEKLPTAAVLCRAKNAIPGLVESLR----RAGIPYQTRGMQG 515

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE-DDIFKICTQRHETETVYEYI 470
           + +   ++ + A      + E   S + +L       S+   + +   +    + V E  
Sbjct: 516 ILEDPGVRLVRAALEITDNPEKSASLLLLLDRYRLGLSDLQAVGQNRHRFTPYQIVMEGG 575

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDF--FTLILGAKKGRQQFISRFGNEVIDV 528
            + +    ++ + +   + EL   A F +P         L      QQ       +    
Sbjct: 576 AQVSTEAQTRLEKLRGILTELKDNAPFATPLVLARLAHRLLDLDIEQQLPGSP-CQAGAY 634

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTI----KRAHSANHNEVRIMTVHTAKGLE 584
           + EFLN      +   ++L   ++ L                 ++  V+I+T+H AKGLE
Sbjct: 635 V-EFLNLVRDFGRTPGATLSGFLNWLSAGEDEEASFADLDFEVDNAAVQIITMHAAKGLE 693

Query: 585 SPVVFLVDTGSQVFSHKHI------KKMHIMPSLNDDPGIP----------IWIPQSKSR 628
              V + +     F           + +   P  +D   +P              +   +
Sbjct: 694 WDWVAVPNLNKSTFPSVRGEIWVTQRDVLPYPLRSDRDHLPELELKTQTLLTATGRVSKK 753

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
             ++    +  +     E +RL YV  TRA  +L++         KK    + + +V   
Sbjct: 754 KGLLETFKEDAEHYALREESRLAYVAFTRAKSRLLLGHCWFERQTKKGRPPSQFFLVEQD 813

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                         S    + I  + ST     +  E    +  L+             +
Sbjct: 814 PQQH-IFSDADSLASSGGADIIQPDPSTVPVVESSEEGAVGVANLLTPFNAETFAQEVAR 872

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
             I  P +  P T+ T     +E+   D         +  L Q      +  +       
Sbjct: 873 LGIETPDVEWPDTVVTSIPDKIENPNQDRFDAGIWPAL-PLTQTRPDFAQAVQVTEAALD 931

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPM 836
             K +        +     +++LL  P 
Sbjct: 932 SGKFSGGISQDADEETERRLSQLLHQPQ 959



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 83/286 (29%), Gaps = 33/286 (11%)

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
             +  +       +  +  +    +  + +++T +       +   S    E T     + 
Sbjct: 895  ENPNQDRFDAGIWPALPLTQTRPDFAQAVQVTEAALDSGKFSGGISQDADEETERRLSQL 954

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            + Q          L    +        L   +     +         +     G  +H  
Sbjct: 955  LHQPQTRLGTGDLLG---RISATGMAHLAQDSEGYLLQRLRPLPQQPSVAARLGTYMHAW 1011

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
            +       + + ++    +       +  ++ + L     R  +  ++           V
Sbjct: 1012 IA-----SQLENEDTFI-FDAGTEDGFTPEQRELLHKWQQRYEDLELLRRLRGPQ----V 1061

Query: 850  SVSGKINCPK-KDIIISGRIDQISIS--QQNIFIFEYKTHHHVPQEIEHIPYTHIA---Q 903
               G++   +    +I  RID          I+I ++KT           P  +     Q
Sbjct: 1062 EFDGELYVAEAGGAVIPLRIDAQFEEVQTGKIWIIDWKTGRR------QTPENYAQWLHQ 1115

Query: 904  LSIYEKILKDSYPNKS---LVCLLIYVS----EPKVFIIPQNKLNK 942
            L IY       +P      ++C  I+++      ++  + Q+ L++
Sbjct: 1116 LGIYRLYWLQEHPETPAEDIICAYIFLNEDNPAKQLLTL-QDILDE 1160


>gi|87124723|ref|ZP_01080571.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917]
 gi|86167602|gb|EAQ68861.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917]
          Length = 1214

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 124/901 (13%), Positives = 256/901 (28%), Gaps = 144/901 (15%)

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
             +           +         +  A   + +++  V+ F  L+   +   +  D    
Sbjct: 342  ALMTAIADLWDGPAEQVWRHALPWGLAALRQRRERRGVIGFSGLLDALDPATQPPDQQQA 401

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +   + +     LIDE QDT  +QW ++RS+           S    L  VGD KQ+IY 
Sbjct: 402  VVEALRRRYRVALIDEFQDTDPLQWRLLRSVF--------VGSEAHLLLMVGDPKQAIYR 453

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F G +     R +               I  L ++FR+TA ++  +++  +      GL 
Sbjct: 454  FRGGDLNTYRRARER----------ADRIDALLVNFRTTAPLMQALNRFMA-----PGLR 498

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                      +    +          +S++ S+   Q    T+  ++  + +    L R 
Sbjct: 499  HSQLEVPALEARSSAEP---------LSENGSEGPLQLLDLTADGNACSKTALDEQLPRI 549

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +A    +++             +Q  D+ +LV K +         R       +      
Sbjct: 550  VAQIAVDLLHRQP--------SLQPGDLCILVSKHRQA----EAMRRQLAASGLPSRLVS 597

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            +  +    A + L  L   + +  D      +  S L  +S  ++ K      + + + +
Sbjct: 598  QGDVLATAAAEALQRLLDSLANPADGARLRLLACSALMQWSAAEL-KAAEDNGQLDRLAQ 656

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
             I   A          +  +  L  + +  +         G   G  Q  +R   + +  
Sbjct: 657  RIDALAAQWDH-----LGLLGCLAQVMESNTVASLSER--GRFGGDLQQSARLVQDAVHR 709

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            L   L+     +      LQ     LE  P   +       + + ++TVH +KGLE PVV
Sbjct: 710  LG--LDLASAADWLRRQRLQP----LEALPEERQPHSDTAQSAIAVVTVHRSKGLEYPVV 763

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                   +    +     H             W+          + +  H    T+ E  
Sbjct: 764  ICPYLWQEPAPAQGPLWRHHGR----------WLVALNRDWGAGAAMAAHEDGETRAEAE 813

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            RL YV MTRA  QLI+     +  E          +        E +  + L     +  
Sbjct: 814  RLAYVAMTRAVRQLILINAQASGQEAGP-------LQGWLQARPEGLHPLLLPPETPRRR 866

Query: 709  WIAYEWSTHHP-ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            W     S        P    + +               P + +                 
Sbjct: 867  WQRTVQSQELQLGAVPRRPLDRLWGRSSYSAWSANASDPHRQEEGRDRDPEAELDAAAES 926

Query: 768  TNLESLL-----SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC-TKNAKLWPAKEY 821
               E           +    G  +H++L+ +      +      +               
Sbjct: 927  LPAEESANGPLCEFPRGPAAGDCLHRILERVGFDTLAEDATSRDAIEQELRRAGLAPDWV 986

Query: 822  KNLLLSITRLLENP--------MMTTAMSCDSYSEVSVSGKINCPKKDII---------- 863
              +   + RLL  P         +    +     E++    +    + ++          
Sbjct: 987  GAVQQGLQRLLMAPLGGALGRLRLQQLNADRRRHELNFDLPVAHDGEAVLARNLAVAFCV 1046

Query: 864  ------------------------ISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIE 894
                                    ++G ID +            ++ ++K++    ++  
Sbjct: 1047 QAEARFGGDYAARIAQLTIHSRGYLTGSIDLVFCDDPDPQSGRWWVADWKSNWLGQRDPA 1106

Query: 895  HI-----PYTHIAQLSIYEKILKD--SYPNKSLVCLLIYVSEPKVF--IIPQNKLNKAFA 945
                   P  +        K L+    + +  L   L  V+  +     +P     +   
Sbjct: 1107 SQALACGPSHYHP------KALEREMVHHHYPLQAHLYLVALHRFLRWRLPDYAPERHLG 1160

Query: 946  E 946
             
Sbjct: 1161 G 1161


>gi|166153980|ref|YP_001654098.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 434/Bu]
 gi|166154855|ref|YP_001653110.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
 gi|301335177|ref|ZP_07223421.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis L2tet1]
 gi|165929968|emb|CAP03451.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 434/Bu]
 gi|165930843|emb|CAP06405.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
          Length = 1026

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 139/958 (14%), Positives = 273/958 (28%), Gaps = 182/958 (18%)

Query: 5    FGLSL-NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
              LS  + + + +   +    +     + +  + S+     + L   + L    Q     
Sbjct: 205  LALSPLSITLQKLKAWVSCYQHLAPLSLEEMQAFSLRF-KQSDLSIERELPAFVQQFETN 263

Query: 64   ERFSLLSSFFLTQ--KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                 L   F     +   ++N   ++++  +  L    +               +   +
Sbjct: 264  PY--SLDMLFFPGMVQKFQEENRNKKKLSAPASPLDPFFQDWIQ---------LAHPFCQ 312

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                  TL K +  H +    ++     ++ I     LL   D    +  ++ ++   +L
Sbjct: 313  KEPIFHTLLKSVQQHLKTHCAQS--YSHDESIATLESLLDHNDT---VVSQLRKQFQLVL 367

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            IDE QDT   QW++   L         +     +LF +GD KQSIY +  A+    L+ K
Sbjct: 368  IDEFQDTDKRQWQIFSKLFA-------SPDYSGSLFLIGDPKQSIYEWRNADLPTYLQAK 420

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                K A         + L  ++RST +++  ++ +FS+P       ++      H    
Sbjct: 421  HSFPKEAQ--------LILDTNYRSTPELMQGLNHLFSLPTPFLETPQNILYHPLH---- 468

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                          S   S        + S  D   +    S  A  +            
Sbjct: 469  -----------SKGSSEISYSEFSPIHFFSSEDIQEETLWISKTASYLRS---------- 507

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA-IKD 420
                     I   ++ VLV+              L     I +       + D       
Sbjct: 508  ------AYSIPFGNMAVLVQDYPQALK-------LITHSTIPMAYCKEKRIFDRTESPYL 554

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L+ L   +L  E+      +L S LF  S  +   I        +++  + +      S 
Sbjct: 555  LILLLEALLYPENQQKIQAILMSRLFQLSSTE---IHQHLKTFSSLFFTLNRHLYHY-SL 610

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                 K +                  +L    G     +  G+ +   L+    +  +  
Sbjct: 611  LATFYKLMG---------------ENVLSQTIGETLLQTPLGDIIFQELEALCLYLDKTT 655

Query: 541  QNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            +N +  L  LI+ L            + S + N ++I TVH++KGLE  VVF        
Sbjct: 656  ENPHHKLLHLINILITGKYDEELSFSSQSNDENMIKITTVHSSKGLEYDVVFCSCLNK-- 713

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                                                      K+ T   + R +YV  TR
Sbjct: 714  -----------------------------------------AKEKTPSVHMREMYVACTR 732

Query: 658  ASDQLII---CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            A   L I        + + KK +    Y  V         V+ +  ++            
Sbjct: 733  AKKFLFIPFSPIEKRSLSTKKLSALANYANVTKHHSVPHLVETLTSSSPELFSSSFQPPE 792

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI--NEPYILNPSTIDTKGKTNLES 772
            S+  P+   L ++          +      S ++N         L+PS +          
Sbjct: 793  SSLTPDRERLPQQTYFSLPHLPSRTIHSFSSTVENLHFSEPIQELSPSLL---------- 842

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                      G +IHKLL+ +        +       T             +   I  + 
Sbjct: 843  ---FPGGSLTGTLIHKLLESLAGNFAACFEEIFNKAQTLLKNTPLEGYESIIAEKIYTVF 899

Query: 833  ENPM--------MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
               +        +      +      V       ++  +  G +D     +   FI ++K
Sbjct: 900  STTLPFSSGSFALRNIHPHNIR----VEETFLLQEEGELWQGIVDLFFEHKGRFFIIDWK 955

Query: 885  THHHVPQE----IEHI-----PYTHIAQLSIYEKI----LKDSYPNKSLVCLLIYVSE 929
            T     +      + +           Q  +Y K     L     +  +    +++  
Sbjct: 956  TSFLGDETSCYSPDQLHLYIQRQGLDRQERLYRKAAKRFLHQFNSSLQVEMAFVFIRG 1013


>gi|237752434|ref|ZP_04582914.1| ATP-dependent helicase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375923|gb|EEO26014.1| ATP-dependent helicase [Helicobacter winghamensis ATCC BAA-430]
          Length = 679

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 99/715 (13%), Positives = 195/715 (27%), Gaps = 197/715 (27%)

Query: 32  NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ---KNIITQE 88
                +          K  +T++  +             S  L Q    +   K++  + 
Sbjct: 60  KAASEMLSRLSTKFDAKIVKTIEAGTFHAVAYRFLKAKDSIVLKQPRELKVLFKSLYDKR 119

Query: 89  I----NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS----LTLAKYLNAHYEEA 140
           I    ++ +P     L      +       N     +         + +   +   ++  
Sbjct: 120 IFLNASETTPYSANYLYDLFSLYFNATITENFTDWLERKNPQQLEYVEIYLDVWEEFKTL 179

Query: 141 KKKNCVLDFEDLII-NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           K++   +D+ DL++     LL+                  +L+DE QDT+ +Q  ++++L
Sbjct: 180 KQEYRYVDYNDLLLNYKTSLLQNTQSPL---------FKEVLVDEYQDTNPLQDSILQAL 230

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                       +P +LF VGD  QSIY+F+GA+   +   K               I  
Sbjct: 231 ------------NPPSLFCVGDYDQSIYAFNGADISIIGSFKERY--------TNGKIFS 270

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RST  IL + ++V                                  +  V +  
Sbjct: 271 LTKNYRSTEPILNLANRVIEKNPRIYPK------------------------KLEVVKDK 306

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
           +  NP    +   F               IA  I                     +I V+
Sbjct: 307 NFGNPALLVYDELFLQYAG----------IANKIK-------------LSNRPYSEIAVI 343

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R       I    R L     I           D   +  ++ L   + + +D ++F+ 
Sbjct: 344 FRNNSSADGIEASLREL----GIPSKRKGGVSFFDSKEVVYMLNLCTLLFNPKDMMAFIH 399

Query: 440 ML----------------------KSPLF-----------------------NFSEDDIF 454
            L                         L                           +D + 
Sbjct: 400 TLSHAKGIGNAVAKDIYEALILLGNGDLRQGILHPDKTIKEPYKKGIQNTQLGLFDDFLE 459

Query: 455 KICTQRHETETVYEYIQKFANCGISKF----QHVIKYI-------------HELIHIAQF 497
              T R  T  +    +  A     K        +  +             + LI   Q 
Sbjct: 460 FNNTARFHTLPLENDFKSNAILSHPKITKDGAEFLNALYCFFKFFNAYDKPYNLIAKTQA 519

Query: 498 CSPHDFFTLILGAKKGRQQ---FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                     L  ++   +    +     E ++ ++  ++         Y  +   ++ +
Sbjct: 520 LPIFQIVAQKLAKERAITKEGVILEEKRLEALEKINRKISLLRDL-ATHYEDIGRFLNAM 578

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 +     +    V ++++H +KGLE   V++VD     F +K             
Sbjct: 579 ILGSSEM-----SEGEGVHLLSIHASKGLEFGEVYIVDLMEGRFPNK------------- 620

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                    +  + EE  RL YV +TRA + L +     
Sbjct: 621 ---------------------KLMQQGGSLEEERRLFYVAVTRAKENLYLSYAKK 654


>gi|291302042|ref|YP_003513320.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290571262|gb|ADD44227.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 1040

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 109/995 (10%), Positives = 266/995 (26%), Gaps = 159/995 (15%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
            +         V          +          A  L +    +       LL+   +  
Sbjct: 92  ARLARTGSEVPVYSFPALAFAVLRAAANRHDAPAPQLLK--GPEQDVIIRELLAHDAVEW 149

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
               +  + T+    +   L++ L ++ +  I            +        A      
Sbjct: 150 PEAVRPALGTRTFAAQ---LRDLLLRATERGISAP--RLARLGREHDRPEWVAAADFMTR 204

Query: 137 YEEAKKKNCV-----LDFEDLIINTN-DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           Y +      +      D  +++     +L    ++    ++          +DEVQD   
Sbjct: 205 YVDVLALRSLTGGATYDSAEIVRAAASELADDPELVPPPKFT--------FVDEVQDLDP 256

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q E++R +                L A GD   + + F GA+ + +           T 
Sbjct: 257 AQLELLRLVAGQ----------GANLVAFGDADSATFGFRGADVRLLREFGDRFP---TA 303

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            G     + L    RS + +L     V             +              G V++
Sbjct: 304 DGDPAPEVNLATCHRSASALLNATSLVAKKLRGTDRFRARAPRPEV-------GAGQVEV 356

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                         +A   A + A  I+  +    +        
Sbjct: 357 ------------------------------AALRSAAQQAAYIARQLRVAHLRE-----G 381

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFIL 429
           +    + V+V+          +         + V        L+    ++ L+ + +  L
Sbjct: 382 VAWSQMAVIVKS---AAEHLPVVERALRHAGVPVEIAAIDQALSARPIVRHLLTIIQCGL 438

Query: 430 SQE--DDLSFVCMLKSPLFNFSEDDIFKICTQ-----------RHETETVYEY---IQKF 473
           + +  D+ + V +L S           ++  +           R   E + E      + 
Sbjct: 439 NPKSLDEDTAVALLHSVYGGADSLSERRLRQELRRLAHAADVFRSPGELLVEALRDPAEL 498

Query: 474 ANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
                  +    + I  L+    +   S  D    +       ++   R  +     +  
Sbjct: 499 TALPEEPWAEPPRRIAGLMECVRSATGSVEDVLWAVWERADLSRRLARRAVSRDSRAVAA 558

Query: 532 ---------FLNFTLRNEQNSY---SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                      ++            + +       +  P   + A +     V+++T H+
Sbjct: 559 DGDLDAMMTLFDWAADFADRLPGAGADVFAAHVLEQVLPADTRAAQARRGETVQLLTAHS 618

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGL+  +V +       + +   +   +      +      +  + +            
Sbjct: 619 AKGLQWDLVVVAGVQEGTWPNLRPRGSIMGSEALVETVTSGTVVDTMTL----------- 667

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                +E  RL YV  TRA D+LI+   ++    + S       +  +     ER   + 
Sbjct: 668 ---LLDEERRLFYVAATRARDRLIVTCVADEDENQPSRFIEELGITVERPARLERPMTLP 724

Query: 700 LTNSINKDEWIAYEWSTHHPENTPL----EREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
              +  +                 L    ++        +   +             E  
Sbjct: 725 SLVAELRLAACGPAGRRKDAAIAQLSVLAKQAVPGADPEEWWGLRPISDHAPLILPGERV 784

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTF-------NRGLIIHKLLQVIFTLPEHKRKNFITSY 808
            ++PST++   +  L  +L  +            G ++H              +  +  +
Sbjct: 785 KVSPSTVELVEQCGLRWMLERHGGTEPSGLPQEIGNLVHAA--AEAAAVTDDPRQAMADF 842

Query: 809 CTKNAKLWPAKE---YKNLLLSITRLLENPMMTTAMSCDSY----SEVSVSGKINCPKKD 861
             ++    P +     K     +  +++     + +  ++     +E   + K+      
Sbjct: 843 VAQHLAKLPFEAPWKAKQDSERVRSMVD--KFASWLESNNRDLVAAEKRFTVKLPDGPPG 900

Query: 862 II--ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD-SYPN 917
           +   +SG +D++       + + + KT        E        QL+ Y+  ++  ++  
Sbjct: 901 VTTELSGAVDRLERDLHGRLHVVDIKTGKTPISAAEAETN---PQLAAYQVAVEAGAFAE 957

Query: 918 KSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
             L             + P +    A       +P
Sbjct: 958 HGLEA------GGATLVYPASSTKAASVREQPALP 986


>gi|296158274|ref|ZP_06841106.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295891610|gb|EFG71396.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 708

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 106/718 (14%), Positives = 213/718 (29%), Gaps = 125/718 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQ 60
            R  L +      I              +  +       G   + + A    L  A    
Sbjct: 79  RRAALEMIRRVTRIAGAALGTRAALAQGL-TWSGTFHSVGARLLREYADLIGLAPAFTIN 137

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++        + ++     +       +  ++  +     ++ D    +   
Sbjct: 138 DREDSADLMNLVRHELGLSAKERRFPAKG--TCFAIYSRVVNTGASLGQVLD--KAFPWC 193

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +   A L +   L A Y EAK+K  VLD++DL++  + +  +  ++A     +    +H+
Sbjct: 194 REWEADLRM---LFAAYVEAKQKQSVLDYDDLLLYWSHMAAEPAIAAD----LSARFDHV 246

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF GA  + +L  
Sbjct: 247 LVDEYQDTNRLQASILLAL----------KPDGRGLTVVGDDAQSIYSFRGATVRNILDF 296

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            + L  ++RSTA IL   + V  +       +  +      R  
Sbjct: 297 PAHF-------DPPAKQVTLERNYRSTAPILAASNAVIELASERYTKNLWTDKASAQRP- 348

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                              L   +  +  AR +   +       
Sbjct: 349 ----------------------------------RLVSVADEADQARYVVEQVLEAREQG 374

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     ++ K   VL R    +  +            I  V        D + +KD
Sbjct: 375 ----------MKLKSQAVLFRASHHSAALEIEL----TRRNIPFVKFGGLKFLDSVHVKD 420

Query: 421 LMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANC 476
           ++A+ R+  +  D ++   +  L   +   +   +      R  +    +       A  
Sbjct: 421 VLAVLRWAENPRDRVAGFRVVQLLPGVGPATAAKVLDEIVARAGSGNPADTAGGALAAFA 480

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
             ++ Q       +L+               +  +           +  I   D      
Sbjct: 481 APARAQEDWHPFVKLMSSVYGRQTPWPAEFEMVRRWYEPHLERNHEDAAIRHADVLQ--- 537

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVD 592
           + +   +Y S +  ++EL   PP      S     + + + + T+H+AKG E   VF+++
Sbjct: 538 MESIAGTYPSRERFLTELTLDPPDATSDESGVPLIDEDYLILSTIHSAKGQEWRNVFVLN 597

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                                                           +   +E  RLLY
Sbjct: 598 GVDGCIPSDLGTGS----------------------------------EEEIDEERRLLY 623

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           V MTRA + L I          +++    +     +      +  +    +  +    
Sbjct: 624 VAMTRAKEDLHIVVPQRFYVHNQTHMGDRHVWASRTRFIPAHLMPLFDAYAWPRVPVP 681


>gi|29839776|ref|NP_828882.1| exodeoxyribonuclease V, beta subunit [Chlamydophila caviae GPIC]
 gi|29834123|gb|AAP04760.1| exodeoxyribonuclease V, beta subunit [Chlamydophila caviae GPIC]
          Length = 1045

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 131/822 (15%), Positives = 239/822 (29%), Gaps = 153/822 (18%)

Query: 133  LNAHYEEAKKKN--CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            L    +   K +    L  ++ I+   ++L     S  I   + +    +LIDE QDT  
Sbjct: 323  LLQDVQLYLKNHYTQWLSPDESILALEEILLSSR-SEEIIETLRKRFQLVLIDEFQDTDR 381

Query: 191  IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
             QW +   L  +     +       LF +GD KQSIY +  A+    L+ K    K    
Sbjct: 382  KQWNIFSKLFANDAFSGS-------LFLIGDPKQSIYEWRNADLATYLKAKSSFPKS--- 431

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 S + L  ++RSTA ++  V+ +F        +                       
Sbjct: 432  -----SQLHLINNYRSTAQLMEAVNILFCKCSPFLQIPSYE-------------PIEYHP 473

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                 S+H    +     + SY D   Q       A  I++T S +  T           
Sbjct: 474  LCPQSSEHFENSHHAPIHFFSYDDISDQ-------AAWISHTASYLQATYH--------- 517

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM-ALGRFIL 429
            I    + +LV               L     I V  +    +        L  A    IL
Sbjct: 518  IPLGRMAILVSDSAQAFD-------LITHCSIPVAFSKNKSIFHLTETYLLTLAWLEAIL 570

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              E+      +L S LF  +  D      ++ E  + Y +  +              ++ 
Sbjct: 571  HPENYEKIQRVLLSSLFRHNLSD----TIEKKELYSTYFFSLRSYVFDYGLLATFYHFM- 625

Query: 490  ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
             L   A   +P                       + ++ L  +L+    + Q+    LQ 
Sbjct: 626  TLQGEALLKTP-----------------QGDLSFQEMERLCAYLDTVSSHPQHQLLYLQY 668

Query: 550  LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
                          ++S +   ++I T+H +KGLE  VVF         +          
Sbjct: 669  FSETGRWEESLSFSSYSEDTEILKITTIHASKGLEYDVVFCPGLDKSKKNKSAS------ 722

Query: 610  PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                                E+ R +YV  TRA  QL I   ++
Sbjct: 723  ------------------------------------EWIREMYVACTRAKKQLFIPIQNS 746

Query: 670  TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
            +++   S    +   V       +  +++   +       I    S        +    T
Sbjct: 747  SNSRCNSALTNYVKHVGSYESILDLAQQLTKEHPRLFSLSITETRSETTDPVYKIIPPST 806

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD--NQTFNRGLIIH 787
                +   K      S           L      +      E + S    +    G+IIH
Sbjct: 807  FTLSIAPAKQIFSFSS---------VKLAFDNEVSLDNVPAEPVASFVLPRGRKTGIIIH 857

Query: 788  KLLQVI---FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--MTTAMS 842
            K+L+ I   F +   K  + +T +             + +   +     +P+   T + S
Sbjct: 858  KILENISPNFKISFSKIVSIVTHFVKNTHLEGYE---EIISQKLVTTFSSPLSFATESFS 914

Query: 843  CDSYSE--VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
                    ++         ++ +  G ID         +I ++KT       +E+     
Sbjct: 915  LQDICPSKIACEESFLFSNQEQLWQGVIDLFFEYNDKYYIIDWKTSFLGETSLEYSKENL 974

Query: 901  IA---------QLSIYEKI----LKDSYPNKSLVCLLIYVSE 929
            +          Q +IY       L+       +    I++  
Sbjct: 975  LNYIKEQNLDYQGAIYTHAAKRFLQQFDIVSDVEMGFIFIRG 1016


>gi|124022671|ref|YP_001016978.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9303]
 gi|123962957|gb|ABM77713.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
            MIT 9303]
          Length = 1274

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 103/902 (11%), Positives = 243/902 (26%), Gaps = 186/902 (20%)

Query: 134  NAHYEEAKKKNCVLDFEDLII------NTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQ 186
             +   E +++  V+ + +L+        +  + +   D  A     + Q     LIDE Q
Sbjct: 371  LSALAERRRQRGVMSYAELLSALDPKPQSETIAQPHPDQQAPWLEALRQRYRVALIDEFQ 430

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            DT  +QW ++         G   HS    L  VGD KQ+IY F G +    +  +     
Sbjct: 431  DTDPVQWRLLE--------GAFAHSPDHLLLMVGDPKQAIYRFRGGDLNTYMHAR----- 477

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                  +   I  L  +FR+T  +L  ++ + + P   +   +  + T   +++      
Sbjct: 478  -----SKVDRIDALLDNFRTTTPLLDGLNDLMA-PGLRRSKLDVPSLTACSQATPRSLPL 531

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             V   + +     +                 + +    +   +A+ + +++ +D+     
Sbjct: 532  GVNPLQLLNLDEATHPTGSI-----PSPLTSKTNLEEQIPTAVAHAVLDLLQSDSYN--- 583

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    DI +LV + +         R       +      +  +    A + L     
Sbjct: 584  ----FSPSDICILVGRHRQAAS----IRQGLAVAGVPTRLVSQGDVLTSEAAQVLQRFLD 635

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +       S   +  S L  ++ + +                  +              
Sbjct: 636  CLARPSHSSSLKLVACSALMQWNTEQL---------------AHAECNGELDQLALRFRN 680

Query: 487  YIHELIHIAQFCSPHDFFT-LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
            +   L  +       +      +     R + +              +   +  +    S
Sbjct: 681  WAINLPRLGLMGCLAELLEGRTIADLSERGRLLGDLYQCAQ-----LVQEVIHRQGLDAS 735

Query: 546  SLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +  + +      P                + V ++TVH +KG+E PVV            
Sbjct: 736  TAADWLRRQRLQPVDPVPEVRQPHSDVAESAVAVVTVHRSKGMEYPVVICPYLW------ 789

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                 +   P           +  S         L +   +++ +E  RL YV +TRA  
Sbjct: 790  -QAPSLPHGPLWRSGSESHWCVALSTGWGKGWQ-LSQQSHQASLQEAERLAYVAITRACS 847

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST---- 716
             L++        ++ +    W   V       + +   +++  +++ +            
Sbjct: 848  LLMLIWARGA-KQEGNPLSAWLFGVDAIDAAMQDLTPERMSAWLDRQQLPITVVPAQLKS 906

Query: 717  --HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL---- 770
                 +  PL+ E  + Q    +       S     ++  +  + S      +       
Sbjct: 907  MQQRWQPPPLQGELALGQTPQRRLDLSWGRSSYSAWVSAAHTYDGSAPADPLELEEGRDS 966

Query: 771  --------------------------------ESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
                                              L    +    G  +H++L+ +     
Sbjct: 967  DQQKLEPMLKLQDQSAIADASRSTPTLNWSDQSPLGQFPRGAVAGDCLHRILERLDFCKP 1026

Query: 799  HKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEV 849
             +  N +     +            ++   + R+L  P         +          E+
Sbjct: 1027 LQDPNAVIVIEEELRRAGLDITLLASVQDGLDRVLSTPIGGSLGGLRLNQLHGQRRIHEL 1086

Query: 850  SVSGKINCPKK----------------------------------DIIISGRIDQISISQ 875
            S    I    K                                     ++G ID +    
Sbjct: 1087 SFDLPIAHQGKVLRSFDLASVFHLNPLARFGLPYAEMIKGLNVCSRGFLTGSIDLVFTDA 1146

Query: 876  Q-----NIFIFEYKTHHHVPQEIE-------------------HIPYTHIAQLSIYEKIL 911
            +       ++ ++K++    ++ E                    + + +  Q  +Y   L
Sbjct: 1147 EDSLEARWWVADWKSNWIGRRDSEGQAVACGPLHYDDSAMEQQMLLHHYPLQAHLYLVAL 1206

Query: 912  KD 913
              
Sbjct: 1207 HR 1208


>gi|222823786|ref|YP_002575360.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
 gi|222539008|gb|ACM64109.1| ATP-dependent DNA helicase [Campylobacter lari RM2100]
          Length = 675

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 103/626 (16%), Positives = 189/626 (30%), Gaps = 180/626 (28%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   YEE K +   +DF DL+I     LK+             E + IL+DE QD
Sbjct: 169 EIYEDILKEYEEEKARFNYVDFNDLLIKLKYALKEHHF----------EFDEILVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 219 TNTLQGSLIDAF------------KSKSLFCVGDYDQSIYAFNGADISIIGSFKDRF--- 263

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    I  L  ++RS+ +IL + +KV    E                         
Sbjct: 264 -----LDAKIFTLNKNYRSSKNILALANKVILNNERLYPK-------------------- 298

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V++      P   ++   FD              IA  I              
Sbjct: 299 ----ELIVTREGDFKAPSLLTFNELFDQYST----------IAKIILQ------------ 332

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +   +I V+ R       I    R L     IS          + L +K   ++   
Sbjct: 333 -SGVDLNEIAVIFRNNSSADGIEVALREL----GISSKRKGSGSFFESLEVKAFCSMLAI 387

Query: 428 ILSQEDDLSFVCML--KSPLFNFSEDDIFK------------------------------ 455
           IL+ +D ++F+ +L     +      DIF                               
Sbjct: 388 ILNPKDIMAFIHLLEYTKGVGGVLAKDIFDSLLKLGHANLIKGFLEPDTSINLKKYKKQS 447

Query: 456 ----ICTQRHETETVYEYIQKFANCGISKF---------QHVIKYIHELIHIAQFCSPHD 502
               +     E  +   +  +                     ++ +   I  A  C    
Sbjct: 448 YQLGLFDDIEELASPLRFNLESEFNTHPILSLPKINETCAKNLEKLCLFIKKASECKIST 507

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF---------------TLRNEQNSYSSL 547
               ++      ++       +     +  ++                 L+    +YS  
Sbjct: 508 QLVNLILENDYFKEICDILATKRATNKNSNVDLNKKNEILEKISAKMFVLKELAKNYSDN 567

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + L      +     +N N V ++++H +KGLE  +VF++D     F ++ +  M 
Sbjct: 568 YKYYNFLTLGASEM-----SNGNGVNLLSIHASKGLEFELVFVIDLAQGRFPNQKLMSMG 622

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                              + EE  RL YV +TRA D L +   
Sbjct: 623 G----------------------------------SLEEERRLFYVAVTRAKDTLYLSYA 648

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDE 693
                +K + Q + + +       ++
Sbjct: 649 KYDKIKKSNYQPSCFLIEAGMCKEEQ 674


>gi|260556195|ref|ZP_05828414.1| ATP-dependent DNA helicase PcrA [Acinetobacter baumannii ATCC
           19606]
 gi|260410250|gb|EEX03549.1| ATP-dependent DNA helicase PcrA [Acinetobacter baumannii ATCC
           19606]
          Length = 688

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 107/666 (16%), Positives = 214/666 (32%), Gaps = 143/666 (21%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 94  AASEIVARVEQHVGAQAKGLRASTFHTFCMYLLRRN-----PQAFGLTQFSIIDRDDQLL 148

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +        K        
Sbjct: 149 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQSKLSEAL-----LKQLPEAYEY 196

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-WIRYKIDQEINHILIDEV 185
            +    L   YE+ K++   LD++D++      L+  +    W+          +L+DE+
Sbjct: 197 KSQIAELMKTYEQRKRERNFLDYDDILSIVAVHLQNSEALTNWVAGFCQA----LLVDEM 252

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 253 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 301

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I  L L++RST +IL + + + S                +   +  G+ 
Sbjct: 302 --------DAVIHTLDLNYRSTQEILDLSNWLLSHSP---------IDYQKQLQAHRGKG 344

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              QL        +                          A  IA  +            
Sbjct: 345 QKPQLHLFGNEFEE--------------------------ANWIAQDLIERHQQG----- 373

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D +VLVR       +       +    I         L +   +KD+++L 
Sbjct: 374 -----ANWYDHMVLVRSGYSARYLEGAFIAAE----IPYRFIGGVKLLESAHVKDVLSLL 424

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV- 484
           R + + +DDL+++  L +      +    K+  +      V E  Q+    G    Q + 
Sbjct: 425 RIVSNPQDDLAWMRFL-TLWDGIGDVGASKLAQELMSISEVEERCQRLERHGKVPLQAIL 483

Query: 485 ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
               +  + + +  +   +       +       Q + ++  +      D       ++ 
Sbjct: 484 ILKQLDVLQQHVEASIGLALDALSEQL------EQNYKTKDWSRRARDFDLVKQLARKH- 536

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL E + E    P +I +   + + + V ++T+H+AKG E  V ++         
Sbjct: 537 ----ASLGEFLEEYVLEPISISEIEKAGDDDLVTLITIHSAKGAEQKVCYVP-------- 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                         N              EE  R+LYV +TRA 
Sbjct: 585 --------------------------HVSPNQYPYARAQGDFDEVEEERRVLYVALTRAE 618

Query: 660 DQLIIC 665
           ++LI+ 
Sbjct: 619 NELILT 624


>gi|238796709|ref|ZP_04640215.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969]
 gi|238719440|gb|EEQ11250.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969]
          Length = 1136

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 144/958 (15%), Positives = 282/958 (29%), Gaps = 163/958 (17%)

Query: 8    SLNESYELIYK-DLWPLPYFQVSDINKY-----VSLSMETGNPTILKKAQTLQQASQTQC 61
            +  E  E I + D        +   + +          E   P   +     +     + 
Sbjct: 252  AAGEMAERIARVDTEAAAAIWIGTFHSFGLDLIRRFHDELNLPLDPRLLDRTEAVELLEH 311

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                  L+    L        +I+T  I++   ++ +    +     +            
Sbjct: 312  EFPILDLVHYRNLYDPTRMIADILT-GISRAKDEVVDA--NTYLALAQAMRDRAVGIEDI 368

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            +T         + A YE  K++   +DF DL+     LL++ +    I   I     H+L
Sbjct: 369  ATAEKSIEVARVYATYETLKRQARCIDFGDLVSLPVKLLEENEA---ILSHIQSTYEHVL 425

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +DE QD +     ++++L                L+ VGD KQSIY F GA    ++   
Sbjct: 426  VDEYQDVNHSSVRLLKALCG----------GGENLWVVGDAKQSIYRFRGASSFNMIHFG 475

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                              L +++RS  +I++     FS       + +  +     R+S 
Sbjct: 476  NE-------DFPGGLRYRLKMNYRSVPEIVSA----FSNFALNMTVGDADSGLCAERTSN 524

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
              +     + +  +                                 IA  I  M G+  
Sbjct: 525  AQKPELRCVDQGRLQTPS-----------------------------IADAIKEMQGSG- 554

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                      +  D  +L    +    I      L     I V+      + +   IKD 
Sbjct: 555  ---------YKYSDQAILCTGNEKLSEIGQQLEIL----GIPVLYLG--SVFERPEIKDW 599

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF-ANCGISK 480
            + L   ++ +      V +   P F  S DD+  + T   E ET  ++  K         
Sbjct: 600  LTLLSLLVDRRAMG-LVRIACLPEFTMSLDDVGSVLTHLREDETGSDWKTKIDDFQISDN 658

Query: 481  FQHVIKYI-HELIHIAQFCSPHDFFTLI-LGAKKGRQQFISRFGNEVIDVL---DEFLNF 535
             +  +  +   L   +   SP +    + L   +   +  +     V        + LNF
Sbjct: 659  GRTALNRLVKTLSGFSANDSPWNVLATVLLDRTRIAARMATSTHCSVRSQCIATWQLLNF 718

Query: 536  TLRNEQNSY-----SSLQELISELEQYPPTIKRAHSANH---NEVRIMTVHTAKGLESPV 587
                  +        +L  +   +        R   A     + VR+MT+H AKGLE PV
Sbjct: 719  LRAQPSSGEGVFITRTLDRIRRLVRLGDDRDLRQLPAAAQSIDAVRLMTIHGAKGLEFPV 778

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            + L    +        K++   P+     G               S+  +      + E 
Sbjct: 779  IHLPGMNADTLPGNPQKQVCPPPNGMIAEGR--------------SNAKEQFNLEYKAER 824

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
              L YV ++RA D+L +   +  +           D +     +  +     L   I K 
Sbjct: 825  ECLFYVALSRAEDRLFLYATTRNAAGSTRKLS---DFLNRIGSSLVQNNVEPLHAVIEKP 881

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            E +  +W              +  Q+   +  P++ F      I       P        
Sbjct: 882  ESLPVDWVVSGDLVL------SGAQISLYESCPRRFFYTHILQIGGRRTPTP-------- 927

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-----CTKNAKLWPAKEYK 822
                  L  +           + Q +      K  +               +   A E+K
Sbjct: 928  -----FLKMHDAVR------NVFQELVNTAPVKITDIEDRVTQAFTVEGLTEHGYAPEFK 976

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN----I 878
            +L + +     +      +     SE   +        +  I+ + D + +         
Sbjct: 977  SLAIDMVSYFAS------IRESHNSEA--TCAFTMKLGETSITIQPDDVLVHPDGRKTFR 1028

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
             +   KT H   +E   +        + +    +  +P+  +   L+++S+  V  I 
Sbjct: 1029 RV---KTGHKRDKEESDLGA------AAFVLATRQVFPDAIVE--LVHLSDQTVTPID 1075


>gi|115472169|ref|NP_001059683.1| Os07g0492100 [Oryza sativa Japonica Group]
 gi|34393626|dbj|BAC83302.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group]
 gi|50508450|dbj|BAD30552.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group]
 gi|113611219|dbj|BAF21597.1| Os07g0492100 [Oryza sativa Japonica Group]
 gi|218199642|gb|EEC82069.1| hypothetical protein OsI_26061 [Oryza sativa Indica Group]
          Length = 1165

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 118/688 (17%), Positives = 204/688 (29%), Gaps = 142/688 (20%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
              K+K KK Q    + +    T + ++           +  HY E  +    LD+ D I 
Sbjct: 430  SFKDKAKKWQKFVTQAKASGRTPEEYEKKGDL--TGASILRHYNEILRSCNALDYHDFIN 487

Query: 155  NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            ++  LL K      +  +       I++DE QDTS +Q+ ++++L               
Sbjct: 488  SSITLLTKFPE---VYDECRNTWQAIVVDEFQDTSAMQYYLLKTLAS-----------HN 533

Query: 215  TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             +  VGDE QSI+SF+GA+       +R               + L  ++RST  I+   
Sbjct: 534  RITIVGDEDQSIFSFNGADVSGFDSFRRDFPNH--------KEVRLSKNYRSTRAIVEAA 585

Query: 275  DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
              +       Q           H+ +        ++  +     DS              
Sbjct: 586  TALIHNNTKRQS----------HKLAETDNPSGNKIIVKECHSEDS-------------- 621

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                         + A+ I  +I T +    G         I VL R++          R
Sbjct: 622  -------------QCAFVIDKIIETTSSSVEGCH----FGKIAVLYRRQITGKAFQASFR 664

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
              K  + I               IK +MA+ +  L   DD +        +    +++  
Sbjct: 665  NRKIPFNIH-----GVAFYRKKVIKAIMAILKTTLPGCDDDAPWHQAFKAILPGDKEEKK 719

Query: 455  KICTQRHE-----------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
            KI     +                 +  V    ++       K    +  + +L+   Q 
Sbjct: 720  KIIHHIEKISLARKCSFISAATDIFSAKVSGTFKRAQITQGRKVLSALDSLSKLVEREQS 779

Query: 498  CSPH-----DFF--TLILGAKKGRQQFISRFGNEVIDV---LDEFLNFTLRN-------- 539
             S       D      +L  +        +  NE  D+   L   ++             
Sbjct: 780  VSVVISSAGDMLPQKYLLEKRAIVDADGGKLLNEDNDIRSVLQFLMDDVSDFLSTHFSSS 839

Query: 540  -------EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLV 591
                   E+   S+L+  I  +        R     N N + + T+H +KGLE  VVF+V
Sbjct: 840  VDTSKTEEKGCASTLKAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVVFIV 899

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                      H     +                                 ST EE  RL 
Sbjct: 900  QANDSEIPLLHEYNGTV-----------------------------KEAGSTLEEERRLF 930

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YV MTRA  +L I   +  SN +      +   +       +    ++ T     +    
Sbjct: 931  YVAMTRARKKLYILHVTVDSNRQLLQPSRFLREIPAHLLEVQGEGTVRRTPEQPVNIPFD 990

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKI 739
                    E   + R ET      +Q  
Sbjct: 991  QPEGDTSVERPMVVRNETSPFPEMDQPC 1018


>gi|88808889|ref|ZP_01124398.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805]
 gi|88786831|gb|EAR17989.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805]
          Length = 1229

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 101/904 (11%), Positives = 225/904 (24%), Gaps = 172/904 (19%)

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL--KKRDVS 166
            ++                  L        ++ +++  V+ F  L+    D L       S
Sbjct: 343  ELMQAIAALWDGPGEQTWRYLLMRGLREIDQRRQRRGVVGFSGLL----DALNPTDPSRS 398

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                  +       LIDE QDT  +QW ++R             S    L  VGD KQ+I
Sbjct: 399  QPWITALRARYKVALIDEFQDTDPLQWTLLRQTFA---------SREHLLLMVGDPKQAI 449

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F G +       +           Q   I +L  + R+T  ++  ++++ S       
Sbjct: 450  YRFRGGDLNTYKSARA----------QVDRIDDLLDNRRTTPPLMEAMNRLMSPGLKHSE 499

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            L+  + +     +      G   L     +  D+  +  +    +              A
Sbjct: 500  LAVPAVSAKASCTPLSLPAGEAPLQILAFNPEDAGGSRSRTDLEASI---------PCFA 550

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +   I                 +   D+ +LV + +         R   +   +    
Sbjct: 551  ADLLLQI-----------LSNDTSLTPADLCILVSRHRQA----EAIRDQLSRVGLPSRL 595

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                 +       +L      +    D+     +    L  +  D +             
Sbjct: 596  ISPGDVLSSRGAVELQWFLDGLARPADNERLRRLAAGALMQWPADTLE------------ 643

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG-----AKKGRQQFISRF 521
                         +       +  L               +L          R + +   
Sbjct: 644  -------VCDRNGQLDQFAAKLQALADALPRLGVMGCLAQLLEGETLADLSTRGRLLGDL 696

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                  V D      L     +    ++ +   +  P   +       + V ++TVH +K
Sbjct: 697  QQCARLVQDSMHRQGLNAAGGADWLRRQRLHPPDNVPEQRQPYSDLVASAVAVVTVHRSK 756

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GL+ PVV            K           +    + +                     
Sbjct: 757  GLQYPVVICPYLWEAPSPGKGPLWRLPAGDRSGSWRVALNPHWGSGH-----AAACADAL 811

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                E  RL YV +TRA   L++      +               D            + 
Sbjct: 812  DCMAEAERLAYVAVTRAERHLVLFSAGEANPSGNPLDPWLDARAGDDDPRISLHHPRSIP 871

Query: 702  NSI------------------NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
              +                     +      S      +     ++ +    E +  + +
Sbjct: 872  PDLRWSPSRQPQSLQCGPVPKEALDRSWGRSSYSAWIASASSPHQSNRNNPHELEEGRDV 931

Query: 744  FSPIKNDINEPYILNPSTI-----DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
             +  +        L P  +       +      SL +  +    G  +H++L+ I     
Sbjct: 932  DAGTEAPSTSARDLGPDEVPDVQPSGEPLPRTGSLGTFPRGATAGDCLHRILEQIPFDQP 991

Query: 799  HKRK---NFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYS 847
              +      +    +++      KE  ++L ++  +L +P         +    S     
Sbjct: 992  IDQPSNHELVERELSRSGLDLTLKE--DVLKAVNTVLRSPLGGPLDSLRLADLHSGRRLH 1049

Query: 848  EVSVSGKINCPKKDII----------------------------------ISGRIDQISI 873
            E+S    +    + +                                   ++G ID +  
Sbjct: 1050 ELSFDLPVAHTGRAVRASALASAFRRDPHKRFGPDYAARLETLDIHSRGFLTGSIDLVFT 1109

Query: 874  SQQ-----NIFIFEYKTHHHVPQE-------------------IEHIPYTHIAQLSIYEK 909
                      ++ ++K++    ++                    + + + +  Q  +Y  
Sbjct: 1110 DGDDLATARWWVADWKSNWIGERDGGGQPLYCGPRHYTQSAMEEQMLQHHYPLQAHLYLV 1169

Query: 910  ILKD 913
             L  
Sbjct: 1170 ALHR 1173


>gi|317153478|ref|YP_004121526.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943729|gb|ADU62780.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
          Length = 715

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/581 (15%), Positives = 172/581 (29%), Gaps = 118/581 (20%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R ++     +I++DE QDT+L+Q  ++  L  +             + AVGD+ QSI
Sbjct: 207 EPLRNQLRTRYRYIMVDEYQDTNLVQARIVGHLAGE----------RGNVMAVGDDAQSI 256

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+F GA    ++   +I +           II L  ++RS   IL + +++ S       
Sbjct: 257 YAFRGANVANIMDFPKIFE--------GTKIIRLEKNYRSVQPILDLTNEILSGAAIKFD 308

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               S                  +  QVV     Q                        A
Sbjct: 309 KHLYSDLKS-------------DVLPQVVYPLSDQTQ----------------------A 333

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R     I ++            R     D+ VL R    +  +            +    
Sbjct: 334 RLTVEHILDL-----------GRKYALHDVAVLFRAGYQSFPLEVAL----TRVGLDYQK 378

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  +   IKD++AL R +++  D +++   ++          + +I    H  +  
Sbjct: 379 FGGIRFHEAAHIKDVLALLRLVVNPHDLMAWQRAVEHVK-GIGPKTVARIYRAMHTDDAK 437

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEV 525
           Y       +    + + ++  +  L  +A    P      IL   +            + 
Sbjct: 438 YMATITKKH---DELRELLNELDGLRAMA--GRPSAILERILAFYQPILIDKYPDDYPKR 492

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              L++             + + +L+ +L               N V + T+H+AKGLE 
Sbjct: 493 QAGLEQLGQIAHNY-----TDMDQLLGDLSLDGD--PDDEKRKENAVVLSTIHSAKGLEW 545

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V ++D   + F  +                                      +    E
Sbjct: 546 SAVIIIDLVEERFPSR----------------------------------KAMQRPEDLE 571

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL+YV  TRA + L +     +S   + +  +   +               L  S  
Sbjct: 572 EERRLMYVACTRAKECLTL--FVPSSVYNRQSGISDPTLPSPFVLELPSTVFTPLKESYG 629

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                 +   +     T  +     +     Q  P    +P
Sbjct: 630 GSLEKRWPVDSRPSFGTAAKSAVREQDAQPVQARPAATVNP 670


>gi|187924915|ref|YP_001896557.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187716109|gb|ACD17333.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 720

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 105/678 (15%), Positives = 204/678 (30%), Gaps = 127/678 (18%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQ 60
            R  L +      I              +  +       G   + + A    L  A    
Sbjct: 91  RRAALEMTRRVTRIAGAALGSRAALAQGL-TWSGTFHSVGARLLREYADLIGLAPAFTIN 149

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++        + ++     +       +  ++  +     ++ D    +   
Sbjct: 150 DREDSADLMNLVRHELGLSAKERRFPAKG--TCFAIYSRVVNTGASLGQVLD--KAFPWC 205

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +   A L +   L A Y EAK+K  VLD++DL++  + +  +  ++A     +    +H+
Sbjct: 206 REWEADLRM---LFAAYVEAKQKQSVLDYDDLLLYWSHMAAEPGIAAD----LSGRFDHV 258

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF GA  + +L  
Sbjct: 259 LVDEYQDTNRLQASILLAL----------KPDGRGLTVVGDDAQSIYSFRGATVRNILDF 308

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            + L  ++RS+A IL   + V  +       +  +      R  
Sbjct: 309 PAHF-------DPPAKQVTLERNYRSSAPILAASNAVIELASERYTKNLWTDKASAQRP- 360

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                              L   +  +  AR I   +       
Sbjct: 361 ----------------------------------RLVTVADEADQARYIVEQVLEAREQG 386

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     ++ K   VL R    +  +            I  V        D + +KD
Sbjct: 387 ----------MKLKSQAVLFRAAHHSAALEIEL----TRRNIPFVKFGGLKFLDSVHVKD 432

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDD----IFKICTQRHETETVYEYIQKF-AN 475
           ++A+ R+  +  D ++   +++  L           + ++                  A 
Sbjct: 433 VLAVLRWAENPRDRVAGFRVVQ-LLPGVGPATAARVLDEVVACAGSGNPADTAGGALAAF 491

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
              ++ Q       +L+               +  +           +  I   D  ++ 
Sbjct: 492 TAPARAQEDWHPFVKLMSSIYGRQTPWPAEFEMVRRWYEPHLERNHEDAAIRHAD--VSQ 549

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLV 591
                  +Y+S +  ++EL   PP      S     + + + + T+H+AKG E   VF++
Sbjct: 550 MESI-AGTYASRERFLTELTLDPPDATSDESGVPLIDEDYLILSTIHSAKGQEWRNVFVL 608

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
           +                                                +   +E  RLL
Sbjct: 609 NGVDGCIPSDLGTGS----------------------------------EEEIDEERRLL 634

Query: 652 YVGMTRASDQLIICKHSN 669
           YV MTRA + L I     
Sbjct: 635 YVAMTRAKEDLHIVVPQR 652


>gi|242045726|ref|XP_002460734.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor]
 gi|241924111|gb|EER97255.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor]
          Length = 1185

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 119/747 (15%), Positives = 219/747 (29%), Gaps = 145/747 (19%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            + +E  E I   +      +++ I+ + S  ++    T  +K     +       ++R +
Sbjct: 363  AASEMRERIGTVVGKAVAKEIA-ISTFHSFCLQL-CRTHAEKLGRTSEFIIYGHGQQRRA 420

Query: 68   LLSSF-FLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            ++ +   L           T++ +       K+K KK Q    + +    T + ++    
Sbjct: 421  VIEAERLLENDKNNGVGDTTKQYDADIKNSFKDKAKKWQKFITQAKASGRTPEDYEMKGD 480

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                   +  HY E  +    LD+ D I ++  LL        +  +       I++DE 
Sbjct: 481  L--TGASVLRHYNEILRSCNALDYHDFINSSITLLTNFPE---VYKECQDMWRAIVVDEF 535

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDTS +Q+ +++ L                +  VGDE QSI+SF+GA+       +R   
Sbjct: 536  QDTSAMQYCLLKILAS-----------HNHITIVGDEDQSIFSFNGADVSGFDSFRRDFP 584

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                     +  I L  ++RST  I+     +                            
Sbjct: 585  --------DYKEIRLSKNYRSTRAIVEAATALIQNNSKRH-------------------- 616

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                             +  + +                   + A+ I  +I T +  + 
Sbjct: 617  -------HRKLVETDNPSGCKITVKECHSEDS----------QCAFVIDKIIETTSTTAE 659

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            G        +I VL R++          R  K  + +               IK +MA+ 
Sbjct: 660  GC----NFGNIAVLYRRQVTGKAFQVSFRNRKIPFNVH-----GVAFYRKKVIKAIMAIL 710

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK----- 480
            R  L   DD  +    K+ L    E+    I      +          A    S      
Sbjct: 711  RTTLPGCDDGPWCQAFKALLPCDKEEKKKIIDHVEKISLARECSFISAATDIFSAKVSGT 770

Query: 481  --------FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV---- 528
                     + V+  +  L  + +            G    ++  + +     ID     
Sbjct: 771  FKRSQITQGRKVLSTLDSLSKLVEREQSVSVIISSAGDMLPQKYLLEKRAVVDIDNGKLL 830

Query: 529  ---------LDEFLNFTLRN---------------EQNSYSSLQELISELEQYPPTIKR- 563
                     L   ++                    E+   S+LQ  I  +        R 
Sbjct: 831  NEDSDIRSVLQFLMDDVSDFLSTHFSSSVERSKTDEKGCASTLQAFIDYISLRETENFRS 890

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                N N + + T+H +KGLE  VVF+V          H     +               
Sbjct: 891  RKEENKNSITLTTIHQSKGLEWDVVFIVQANDSEIPLLHEYNCTV--------------- 935

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                              ST EE  RLLYV MTRA  +L I   +  SN +      +  
Sbjct: 936  --------------KEAGSTLEEERRLLYVAMTRARKKLYILHVTVDSNRQLLQPSRFLR 981

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWI 710
             +       +  + ++        +  
Sbjct: 982  EIPVHLLEVQGEETLRKMPEQPSGDIP 1008


>gi|169634461|ref|YP_001708197.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           SDF]
 gi|169153253|emb|CAP02354.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter
           baumannii]
          Length = 688

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 105/666 (15%), Positives = 215/666 (32%), Gaps = 143/666 (21%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 94  AASEIVARVEQHVGAQAKGLRASTFHTFCMYLLRRN-----PQAFGLTQFSIIDRDDQLL 148

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +        K        
Sbjct: 149 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQSKLSEAL-----LKQLPEAYEY 196

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI-NHILIDEV 185
            +    L   YE+ K++   LD++D++   +  L+  +    +           +L+DE+
Sbjct: 197 KSQIAELMKTYEQRKRERNFLDYDDILSIVDVHLQNSE----VLTNWVAGFCQALLVDEM 252

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 253 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 301

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I  L L++RST +IL + + + +                +   +  G+ 
Sbjct: 302 --------DAVIHTLDLNYRSTQEILDLSNWLLAHSP---------IDYQKQLQAHRGKG 344

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              QL        +                          A  IA  +            
Sbjct: 345 QKPQLHLFGNEFEE--------------------------ANWIAQDLIERHQQG----- 373

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D +VLVR       +       +    I         L +   +KD+++L 
Sbjct: 374 -----ANWYDHMVLVRSGYSARYLEGAFIAAE----IPYRFIGGVKLLESAHVKDVLSLL 424

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV- 484
           R + + +DDL+++  L +      +    K+  +      V E  Q+    G    Q + 
Sbjct: 425 RIVSNPQDDLAWMRFL-TLWDGIGDVGASKLAQELMSICEVEERCQRLERHGKVPLQAIL 483

Query: 485 ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
               +  + + +  +   +       +       Q + ++  +  +   D       ++ 
Sbjct: 484 ILKQLDVLQQHVEASIGLALDALSEQL------EQNYKTKDWSRRVRDFDLVKQLARKH- 536

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL E + E    P +I +   + + + V ++T+H+AKG E  V ++         
Sbjct: 537 ----ASLGEFLEEYVLEPISISEIEKAGDDDLVTLITIHSAKGAEQKVCYVP-------- 584

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                         N              EE  R+LYV +TRA 
Sbjct: 585 --------------------------HVSPNQYPYARAQGDFDEVEEERRVLYVALTRAE 618

Query: 660 DQLIIC 665
           ++LI+ 
Sbjct: 619 NELILT 624


>gi|283954348|ref|ZP_06371869.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794147|gb|EFC32895.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 676

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 103/615 (16%), Positives = 197/615 (32%), Gaps = 180/615 (29%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   +DF DL+IN  +LLK+             E + IL+DE QD
Sbjct: 168 EIYEDVLKEYDNEKKRFNYVDFNDLLINLKELLKEE----------KYEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNTLQSSLIEAFHS------------KSLFCVGDYDQSIYAFNGADINIIGGFKDRF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----KDAQIFSLNKNYRSSRSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V+++D    P   ++   FD            + IA  I              
Sbjct: 298 ----ELIVTRNDEFKAPSLLTFEELFDQY----------QNIAKII-------------L 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       I    R       I+ V        + L +K   A+   
Sbjct: 331 TSGVNLEEIAVIFRNNSSADGIEVALRE----QGIASVRKGSGSFFESLEVKAFSAMLAL 386

Query: 428 ILSQEDDLSFVCMLK------------------------------SPLFNFSEDDIFKIC 457
           +++ +D ++F+ +++                               P    +  +  K  
Sbjct: 387 VVNPKDIMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLGPDRGVNLQNHQKRN 446

Query: 458 TQRHETETVYEYIQKFANCGISKF---------------QHVIKYIHELIHIAQFCSPHD 502
            Q    E + E   +      S+F                  ++ I+  +  A       
Sbjct: 447 YQLGLFEDLEELASETRFKFDSEFDAHPILRLSKISDLCAKNLEKIYLFLKKAMELKHSL 506

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ---------------NSYSSL 547
               ++      ++       +        ++   ++E                 +YS +
Sbjct: 507 ALVNLICENSFYREICEELATKRATNKAGQIDLLRKSENLEKIETKFNVLKELTKNYSDI 566

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + L      +     ++   V +++VH +KGLE  +VF++D     F ++ +  M 
Sbjct: 567 YKYYNFLTLGASEM-----SSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLIGMG 621

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                              + EE  RL YV +TRA + L +   
Sbjct: 622 G----------------------------------SLEEERRLFYVAVTRAKNILYLSYA 647

Query: 668 SNTSNEKKSNQRTWY 682
               N+K S   + +
Sbjct: 648 KYDKNKKTSFAPSRF 662


>gi|254416448|ref|ZP_05030200.1| UvrD/REP helicase domain protein [Microcoleus chthonoplastes PCC
           7420]
 gi|196176652|gb|EDX71664.1| UvrD/REP helicase domain protein [Microcoleus chthonoplastes PCC
           7420]
          Length = 777

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 100/616 (16%), Positives = 193/616 (31%), Gaps = 61/616 (9%)

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN-TYKMFKSTLAS 126
           LL       + T +    +    +  P L   +         + +      +        
Sbjct: 167 LLEGVSFDGEETERLRRQSVLRTEVLPSLAYTVIHEAKSSGLLPEDLWVISQQTNDPYDI 226

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L +A  L  HY+   +    +D++D+I+    +L        +R    ++   +  DE Q
Sbjct: 227 LAIAAGLYEHYQRVTRSRDFIDYDDMILAALRVLDDN----TVRQLWQRQFFAVFEDEAQ 282

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQ 245
           D+S +Q+ ++++L  D         +P  L  VGD  Q+I S F  A+P    R      
Sbjct: 283 DSSPLQYRLLQTLAADPT----NPYTPLNLIRVGDPNQAINSTFTPADPIYFNRFC---- 334

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
              T   ++  +  +  + RST  I+   + + +        ++D        S+R  + 
Sbjct: 335 ---TQCQEQQRLATMDQAGRSTPIIIDAANFILNWVNQTYTQNQDE-------STRPFRP 384

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
            T+        Q D+   P+          + Q S        +   + ++   +   + 
Sbjct: 385 QTIHPVPPDDPQTDANPQPEGRGL-----EIYQPSDIYQTVELLGQRVIDLFTRNPNHNA 439

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                       VLVR+ +    I     +LK  + I V          H+ I +++AL 
Sbjct: 440 -----------AVLVRENRQGNFIAQKLDYLKRQHGIDVYDVQGSDRHSHIPI-EILALL 487

Query: 426 RFILSQEDDLSFVCMLKSPLFN--FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           +FI            L   +        D+  + T   +    + Y              
Sbjct: 488 QFIDRPHSPDYLKAALDVLVKRQLIPTQDLNALATYPEQ----FLYPGPLDPHPTPAVSQ 543

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             +Y   L+        +   + +    K  Q  ++        V+ +  +         
Sbjct: 544 AARYCRSLLRARLELPHYQLISFLALTLKYDQSELATADKLAERVVKQTYSS-----SAM 598

Query: 544 YSSLQELISELEQYPPTIKRAHSANH-----NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++L  L   +            A+       ++ I+T+H AKGL+   VFL        
Sbjct: 599 PATLAALSEIVSSERFEPVETEDADSRYLRRRQLTIITMHKAKGLDWDYVFLPFLHEDTI 658

Query: 599 SHKHIKK----MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                           +L +     I     +       +  +   +    E  RLLYV 
Sbjct: 659 PGNPWIPTAAQFLGDFTLAEVARAQIRASLHEHPLPTALEAWEKAGQLKTAEEYRLLYVA 718

Query: 655 MTRASDQLIICKHSNT 670
           MTRA   L I      
Sbjct: 719 MTRAKRLLWISAAQKG 734


>gi|295677216|ref|YP_003605740.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295437059|gb|ADG16229.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 731

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 105/689 (15%), Positives = 200/689 (29%), Gaps = 146/689 (21%)

Query: 3   NRFGLSLNESYELI--YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQ 58
            R  L +      I             ++    +       G   + + A    L  A  
Sbjct: 99  RRAALEMTRRVTRITGAAATSVGARAALAQGLTWAGTFHSVGARLLREYADLIGLAPAFT 158

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQE---------INKKSPDLKEKLKKSQDEFIK 109
               E+   L++        + ++     +         +      L + L  +     +
Sbjct: 159 INDREDSADLMNLVRHELGLSAKERRFPAKGTCFAIYSRVVNTGASLGQVLDSAFPWCRE 218

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             D                    L A Y +AK+K  VLD++DL++  + +  +  ++A  
Sbjct: 219 WEDDLR----------------RLFAAYVDAKQKQSVLDYDDLLLYWSHMAAEPSIAAD- 261

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              +    +H+L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF
Sbjct: 262 ---LSARFDHVLVDEYQDTNRLQASILLAL----------KPDGRGLTVVGDDAQSIYSF 308

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA  + +L      +            + L  ++RST  IL   + V  +       + 
Sbjct: 309 RGATVRNILDFPTQFE-------PPAKQVTLERNYRSTEPILAASNAVIELASERYTKNL 361

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            +      R                                     L   +  +  AR +
Sbjct: 362 WTDKASAQRP-----------------------------------RLVTVADDAAQARYV 386

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
              +                 ++ K   VL R    +  +            I  V    
Sbjct: 387 VEQVLEAREQG----------VKLKSQAVLFRAAHHSAALEIEL----TRRNIPFVKFGG 432

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD----IFKICTQRHETET 465
               D + +KD++A+ R+  +  D ++   +++  L           +  I  +    + 
Sbjct: 433 LKFLDSVHVKDVLAVLRWAENPRDRVAGFRVVQ-LLPGVGPATAAKVLDDIVARADGGDP 491

Query: 466 VYEYIQKF-ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
           V        A    ++ Q       +L+               +  +           + 
Sbjct: 492 VATAGGVLAAFAAPARAQEDWHPFVKLMSSVYGRQTPWPAEFEMVRRWYEPHLERNHEDA 551

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTA 580
            I   D      + +   +Y S +  ++EL   PP      S     + + + + T+H+A
Sbjct: 552 AIRHADLLQ---MESIAGTYPSRERFLTELTLDPPDATSDESGVPLIDEDYLILSTIHSA 608

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KG E   VF+++                                                
Sbjct: 609 KGQEWRNVFVLNGVDGCIPSDLGTGS---------------------------------- 634

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSN 669
               +E  RLLYV MTRA + L I     
Sbjct: 635 DEEIDEERRLLYVAMTRAKEDLHIVVPQR 663


>gi|319954736|ref|YP_004166003.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237]
 gi|319423396|gb|ADV50505.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237]
          Length = 686

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/600 (17%), Positives = 189/600 (31%), Gaps = 113/600 (18%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + L   Y++ K +   LD++DL++     LK    +  +     Q + ++L+DE+QDT+
Sbjct: 182 VEVLLRAYQQKKMEQRYLDYDDLLLVVATQLKTNADARELLA---QNLEYLLVDEMQDTN 238

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +QWE++    E              LF VGD+ QSIYSF GA+ K V + K    +   
Sbjct: 239 PLQWELLSPFVEIC-----------KLFCVGDDAQSIYSFRGADFKNVHQFKDRVPQS-- 285

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  + +L  ++RST +IL + + +            ++              G   
Sbjct: 286 ------EVYKLEKNYRSTQEILDLSNWLLDHATIDYNKRLEAVR----------GPGEKP 329

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +   V                         S     A  IA  I           N    
Sbjct: 330 IILNV-------------------------SDEWQEANWIADEI---------LKNYTDE 355

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D L+L R        T   + +    KI  V            IKDL++L R + 
Sbjct: 356 DRNFADHLILSRS----QYYTKSLQAVFIRRKIPYVTYGGRKFLQAAHIKDLVSLLRIVN 411

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI- 488
           +  D++++V  L +      E    +I       E         A         +I  + 
Sbjct: 412 NPYDEIAWVRFL-TFWEGIGEVRASRIMAAIIADEGKTAIATLLAANISGTDGQIISELY 470

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             +             +    A     ++   +  +                       +
Sbjct: 471 RAVTQEKGKVGKMVEISYEAMALGLAFKYRKDWTEKRKADFPVLKLLAESYASLGEFIGE 530

Query: 549 ELISELEQYP-----PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            L+   E+          K +     + V I T+H+AKGLE+ V  +++   + F     
Sbjct: 531 GLLDNAEKMNGANVLTESKLSTDEQKDHVIISTIHSAKGLEADVCIVLNVSPKSFPS--- 587

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                    EE  R+LYV +TRA ++LI
Sbjct: 588 -------------------------------AYSLDDIDAIEEDRRVLYVALTRAKNRLI 616

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           I    NT++    + R+       +  + E      L  ++   E + +++        P
Sbjct: 617 IT--RNTASISAVHARSTPTQDGKNTDDAETYFLTGLPEALVAQETVGHQFHQVKDAPKP 674


>gi|307299290|ref|ZP_07579091.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915086|gb|EFN45472.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 652

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/629 (17%), Positives = 203/629 (32%), Gaps = 120/629 (19%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
            KA  L +       E+    L     T+    +K I        +  L+     S +  
Sbjct: 110 AKAAGLAENFTILDREDAKD-LIKHCRTELLEERKGI-NSSTLPSAGVLQSIYSYSVNVL 167

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             +R+  +T +  +  L S    + +   Y + K     +D++DL++    L        
Sbjct: 168 SSLRE--STARKNRKFLGSYDEIEEIWKRYVQEKTVQNCVDYDDLLLKALKLFNDNPS-- 223

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I  K  +    +L+DE QDT+++Q+ ++  L+          S    L  VGD+ QSIY
Sbjct: 224 -ILNKEAERFRWVLVDEFQDTNVLQFRLVEMLS----------SVHGNLIVVGDDAQSIY 272

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF GA  + V               +   I ++  ++RST  I+ +++ +          
Sbjct: 273 SFRGARFENVYDFLSA---------KDARIYKIQTNYRSTPQIVELINSI---------- 313

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
               +   + R+ R+     V                           + +       A 
Sbjct: 314 VPQDSIEKQLRAVRMNGPIPV---------------------------VAETWDNLEEAS 346

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A  I   I             +  ++I VL R    +       +   +  K++    
Sbjct: 347 FVAQRIQEHIDDG----------VDPENIAVLYRSHYHS----LELQMEMDKRKMNFTLY 392

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                T+   +KD++AL + I +  D +S+  +L+            +I           
Sbjct: 393 SGPRFTETAHVKDILALLKVIENPLDQVSWGRILR-LFPGVGNATSLRIIQGISAAANDG 451

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG-RQQFISRFGNEVI 526
              ++  N  +SK   + K +  L    +   P +          G           E  
Sbjct: 452 HRAEEVVNSHVSKRIKLDKLVSILGATNEEEPPTEIVRRFYADFYGDYLDEKFPDARERR 511

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             ++  +    R       S+ +L+ +L       I+R  +     V + TVH AKGLE 
Sbjct: 512 MDVERLIEIAGRY-----ISISDLLEDLAVSEKIDIERESAEKQPSVVLSTVHQAKGLEW 566

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            VVF++      F +                                      + + +  
Sbjct: 567 EVVFILAANPGDFPNSM-----------------------------------AILEGSLS 591

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           E  R+ YV +TRA D L I +     +  
Sbjct: 592 EEERIFYVAVTRAKDYLYILRQKGGRSRP 620


>gi|299537346|ref|ZP_07050646.1| UvrD/REP helicase [Lysinibacillus fusiformis ZC1]
 gi|298727237|gb|EFI67812.1| UvrD/REP helicase [Lysinibacillus fusiformis ZC1]
          Length = 718

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 95/710 (13%), Positives = 202/710 (28%), Gaps = 143/710 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSME--TGNPTILKKAQTLQQASQTQCIEER 65
           S N+      K     P+    D +   SL+ +           +  + + +    +  +
Sbjct: 76  SANDMRARFAKFF---PHLPPVDFSTIHSLAFQVVRETLERQGISYGIMEEADKPGVMSK 132

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             +L   F     +       +E+      +K K+   Q+            K  +    
Sbjct: 133 KRVLREIFEQFNGSKITEDQLEELLTYITFIKNKMLPEQEW---AMAEVKVPKKVE---- 185

Query: 126 SLTLAKYLNAHYEEAKK---KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                  +   YEE K+      ++DF+D+++  ND+  K      +  +  +  +  L 
Sbjct: 186 -------ILQRYEEYKRTGCDRLLIDFDDMLLMANDIFTKN---REVLAQYQRRYDFYLT 235

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDTS +Q  +I  L              + L  V DE Q+IYS+ GAEP  +L  ++
Sbjct: 236 DESQDTSPVQHAIIEKLVA----------VHQNLCVVADEDQAIYSWRGAEPDYLLNFQK 285

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           I  +          ++ +  ++RS+A I+   +      +                    
Sbjct: 286 IYPE--------AQVLLMTQNYRSSASIVAPANLFIQRNKKRYNKQMF------------ 325

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                                 +  S+    +        S+ A+ +   + ++    + 
Sbjct: 326 ----------------TQNPAAEPISFKILENY-------SLQAKYVVNQLKSLSKRGST 362

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDL 421
                          VL R       +        +   +     D       H  ++D+
Sbjct: 363 --------------AVLYRNNTSAIPLMDAL----DRAGLPFYMKDSTIRFFTHWVVEDI 404

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE--TVYEYIQKFANCGIS 479
           M   R   + ++   F  + +      +      +     +    T+     +  +    
Sbjct: 405 MNFMRLAYNTKNISIFEKVYRKMNAYITPTQFKALQKVPEDGCVFTLLLEHVELKDYQPE 464

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--TL 537
             + + +    +       +P      I       +        ++    +  L+    L
Sbjct: 465 YIKRIRQTYDSI--QFDQTTPTAMLEHIRYDFGYERALKK-MSEDLGFNYENLLDIVNVL 521

Query: 538 RNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                + S++ E    L+               N + + T+H++KGLE   V+L+D    
Sbjct: 522 GLIARNTSTMTEFAGRLKYLENLARISHLKNEINAITLTTLHSSKGLEYDRVYLIDLIDG 581

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +   +  + +                                          RL YVG+T
Sbjct: 582 ILPSETEEAIEEET--------------------------------------RLFYVGIT 603

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           RA   L +  +S               +       +   K  K      K
Sbjct: 604 RAIRHLELISYSKRFKASVVPSIFMKALKQIVSPQELPKKASKSPGKALK 653


>gi|307693333|ref|ZP_07635570.1| UvrD/REP family ATP-dependent DNA helicase [Ruminococcaceae
           bacterium D16]
          Length = 699

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/576 (14%), Positives = 161/576 (27%), Gaps = 113/576 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y    + + ++D++D +I  + +L++      +  +  +   ++ +DE QDTS I
Sbjct: 176 PIYQEYCRLLRTHQLMDYDDQMIYAHRILRQFP---QLLEQFRRRYPYLCVDEAQDTSKI 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++R L                LF VGDE QSIY F  A P+ + + + I        
Sbjct: 233 QHAILRLLAG----------PSGNLFLVGDEDQSIYGFRAAYPQALTQFESIYP------ 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ L  ++RST  I+    K     +N +            ++ R       ++W
Sbjct: 277 --GAKVLYLEQNYRSTLPIVAAAQKFIEQNKNRRPKHM--------KAVRGEGPALKEIW 326

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
            Q                    D   Q    + +A+                        
Sbjct: 327 VQ--------------------DRSAQYRYLAQVAQDCKEE------------------- 347

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV-GNDRFILTDHLAIKDLMALGRFILS 430
                 +L R              L     I             H  ++D++ +      
Sbjct: 348 ----TAILYRDNDSALP----LIDLLERQGIPYRCRQVDSGFFTHRVVRDIVDILTLAQD 399

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             D  +F+ +        S     +   Q     +    +           +   K +  
Sbjct: 400 PWDGDAFLRVYYKLGAGISRAAAEQAAAQCGPDTSPILELVASLPGTSPWTRRQCKALQT 459

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
            +              I+           R  ++            L     +  +   L
Sbjct: 460 HMANLLTQRADRGVYRIVHFMGYGDYLEQRGMDQSK-------TQILEALGANEPTPGGL 512

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           +  LE     ++   S N     + T+H++KGLE   V L+D    +             
Sbjct: 513 LERLEVLRELVRAGSSQNDCPFILSTIHSSKGLEYKRVILMDVADGLLPKTLPGP----- 567

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                        +    EE  RL YVGMTRA ++L + +   +
Sbjct: 568 ------------------------DASSQELDAYEEERRLFYVGMTRAKEELWVMRFRRS 603

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
               +     +     ++        +        +
Sbjct: 604 ELTSRFASSLFPKSKEEAKKAVPLSPRAVPDLVAIE 639


>gi|297157455|gb|ADI07167.1| ATP-dependent DNA helicase [Streptomyces bingchenggensis BCW-1]
          Length = 1221

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 111/795 (13%), Positives = 215/795 (27%), Gaps = 124/795 (15%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCI-EERFSLLSSFFLTQKFTPQKNIITQEINKKSP 94
              +          A+ L+ A          F+ L +  L       +++I+ E  +   
Sbjct: 145 GARLLADATRFQLAARVLRTAPGPFPALIRPFADLVTDLLALDAELAEHLISAERLRAYD 204

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
              E L       +   +     +   + L  L L       Y   K+   +LDF D I 
Sbjct: 205 G--ELLHTLDGVKLTNAELRKVPEAAHARLELLGLV----EAYRADKRGRDLLDFGDQIA 258

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            +  L + R     I   + ++   +L+DE QDTS+ Q             G     +  
Sbjct: 259 LSATLARTRPEVGRI---LREQFAVVLLDEYQDTSVAQ--------RLLLSGLFGGGTGH 307

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            + AVGD  Q+IY + GA    +              G       L  + RS   +L + 
Sbjct: 308 AVTAVGDPCQAIYGWRGASVANLDDFPEHFP---HADGSPARRFALSENRRSGGRLLDLA 364

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + + +                     R    G   L              +++       
Sbjct: 365 NGLAA-------------------PLRAMHEGVEALRPA--------PGAERDGMVRCAL 397

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                   + LA  IA+ +                     +I VL R   D   I     
Sbjct: 398 LPTHAEELAWLADSIAHLVRT--------------GTPPGEIAVLCRTAGDFARIQGALV 443

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
             +              L     + DL+A+   +     + + V +L  P +     D+ 
Sbjct: 444 EREVPV----EVVGLSGLLHLPEVADLVAVCEVLQDPGANAALVRLLTGPRWRIGARDLA 499

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIK---------------------------- 486
            +  +                    +    ++                            
Sbjct: 500 LLGRRARALVRYEAGGPDDDEDPDRRLAEAVEGVDPAEVVSLADALDTFLTPDGPDDGLP 559

Query: 487 --------------YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
                          + EL   +      D    +L       +  +          + L
Sbjct: 560 FSAEARVRFARLAAELRELR-RSLADPLMDVLHRVLATTGLEVELSASPQALAARRRETL 618

Query: 530 DEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLES 585
             FL+        +  ++L   +  L            +     N V+++T H +KGLE 
Sbjct: 619 GNFLDVAAGFAALDGEATLLAFLGFLRTAAQYEKGLDNSLPGGENTVKVLTAHKSKGLEW 678

Query: 586 PVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            VV +     + F     ++       ++P         +    + +   + +   + +K
Sbjct: 679 DVVAVPGLVDKQFPSDQARESWTANARVLPHALRGDAETLPDVAAWNAKGLTA-FKESMK 737

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY--DMVYDSFHNDERVKKI 698
              + E  RL YV  TR    L+   H     +KK    + +   +          V+  
Sbjct: 738 AHQRTEELRLGYVTFTRPRSLLLGSGHWWGPTQKKPRGPSAFLEALREHCEAGHGEVEAW 797

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                 +++       +       PL+ +   ++      +   L      D        
Sbjct: 798 APPPEEDEENPALKAAAADRAWPLPLDPQGLARRRHAADVVLAHLDRLAAADSEPLVADR 857

Query: 759 PSTIDTKGKTNLESL 773
           PS  DT+  +  E L
Sbjct: 858 PSAHDTQHPSTGEPL 872



 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 26/291 (8%), Positives = 66/291 (22%), Gaps = 32/291 (10%)

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
            ++  R   D+           +      +                 +   + +    +L 
Sbjct: 922  EAADRPDDDLWAGWPAETGHPRPAPEEGATAAPGGGPPPEEARLVASWDRDLDALAGELR 981

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
              +   + +  P     ++   L         +              RG   H  ++   
Sbjct: 982  RARATVRDVPMPYTLSASQLLRLAADPDGFARELARPMPRPPRPAARRGTRFHAWVE--- 1038

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSV 851
                 + +     +   +       +   +        +   +  A +       +   V
Sbjct: 1039 ----SRFEALPLPFLGPDELPGGEDDEPEIANE----RDLAELKEAFARTPYAHRTPYRV 1090

Query: 852  SGKINCPKKDIIISGRIDQISISQQ--------NIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
                        I GRID +  + +           I ++KT      +          Q
Sbjct: 1091 EAPFQLALAGRTIRGRIDAVYRAPRAVGGGPGVRYEIVDWKTGRSQNADP--------LQ 1142

Query: 904  LSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
            L++Y     +    P  ++    +YV   +               I    P
Sbjct: 1143 LAVYRLAWAEQQGLPLSAVSAAFVYVRSGETVRPAALPGRAELERILLGEP 1193


>gi|119963788|ref|YP_948453.1| ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter aurescens TC1]
 gi|119950647|gb|ABM09558.1| putative ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter
            aurescens TC1]
          Length = 1118

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 120/1005 (11%), Positives = 263/1005 (26%), Gaps = 180/1005 (17%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-------METGNPTILKKAQTL 53
            L++ F   L+ S        W    F V    K   +        + +G    L   + L
Sbjct: 92   LRDTFTGRLDRSLSTTPARTWASYAFDVIRRAKAEGILPLTRPPKLLSGPEQDLIIKELL 151

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--R 111
            +  S+          L++   T+                    + ++++  D  I+    
Sbjct: 152  EGHSRPGFQLPWPEDLTAALPTR------------------GFRHEIRQLFDRIIESGRT 193

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN--CVLDFEDLIINTNDLLKKRDVSAWI 169
                    ++        A  L + Y +          D   +I     + +        
Sbjct: 194  AEDLVGLAYECGRPDWMAAAELYSEYRDVLDLRMPEAFDPAGIITTARQIFQDSPE---F 250

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                 Q +  IL+D+ Q+++   +E++  +              + +         +  F
Sbjct: 251  LAAERQRLQLILVDDAQESNPAVFELLADI-----------GEGKDVVVTYSPDTVVQGF 299

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA P  V               QK     L ++ R T ++     +V        G   
Sbjct: 300  RGARPDLVSEL----PSLLGGTQQKVLERPLSVTHRHTPEVAEAWTRVAGRISQRSGGQL 355

Query: 290  DSTTTIRHRS-----SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                    R      +     G V+                               SA  
Sbjct: 356  ARQMEQPQRPEGTGQATTSDHGRVEGHVL--------------------------PSAVH 389

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              R +A  I              +   +  DI V+VR            +   +   I V
Sbjct: 390  ELRYVAQRI---------LEAQLRESREFSDIAVIVRNGGQIS----QLQRYLSGQGIPV 436

Query: 405  VGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRH 461
                    + D +A++ L+     +L          +  L S +   +  ++ ++     
Sbjct: 437  RVPVADSAVRDEVAVRPLLEAFAIVLDPGKLTPETAVSLLTSRIGGATAIELRRLRQSLR 496

Query: 462  ETETVYEYIQKFANCGISKF----------------QHVIKYIHELIHIAQFCSPHD--F 503
              E      +      +                   + + + I      A     +    
Sbjct: 497  REELSGGGGRSSDALLVEALLQPGALASLGIEGSSARRLARMIAAGTAAAAEPGANAESV 556

Query: 504  FTLILGAKKGRQQFIS------RFGNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISE 553
               +  A     ++          G      LD      +   R  +Q   S  ++ +  
Sbjct: 557  LWALWHATGLSSRWTETALEGGNAGARADRDLDAMMALFHTAERFVDQLPGSGPEQFLDY 616

Query: 554  L--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            L  ++ P     A +     V IMT  +A G E PVV +      V+ +  ++   +   
Sbjct: 617  LLNQELPMDTLAARAQLEACVEIMTPASAAGREWPVVIVAGLQEGVWPNTRLRGELL--- 673

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                             +  +        +  + +  R     ++RA + LI    S+  
Sbjct: 674  ----GSTVYADAVEHGVDYALKRGPLSRLRDIRYDELRSFSTAVSRAREVLICTAVSSED 729

Query: 672  NEKKSNQRTWYDMVYDSFHND---------------ERVKKIKLTNSINKDEWIAYEWST 716
             +  +       +    +  D               E  +  +  ++       A+E + 
Sbjct: 730  EQPSAFLDYVAPLGSGEYKRDYTPVDRPMTLRALVAELRQHAQSEDAGTGINGTAHEAAR 789

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES---- 772
                    E             +                 ++PS ++   K+ L+     
Sbjct: 790  ILARLAGTEPAVPGAHPDSWWGLAALSSYEAVVPAGGTVSVSPSKVEAVHKSPLDWFVQA 849

Query: 773  ---LLSDNQTFNRGLIIHKLLQVIFTLPEHK-RKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                 + +   + G ++H + Q +      +     +  + T   K     +       +
Sbjct: 850  AGGEAATDFARSLGTLVHSIAQELPDASGAEYVAELVRRWPTLGMKDNWEGKLDFQRAEL 909

Query: 829  TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI---------------------IISGR 867
              + +       M  +  S ++V         DI                     ++ G+
Sbjct: 910  M-VRKLAQYVLIMRSEGRSLLAVEHDFEVQLPDIAVNAGGTGDPHAPDEEAVRHAVLRGQ 968

Query: 868  IDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            +D++ I  +  + I + KT    P + E        QL  Y+  +
Sbjct: 969  VDRLEIDPEGRLVIVDLKTGKRQPGKAEVAK---HPQLGAYQAAV 1010


>gi|302670129|ref|YP_003830089.1| UvrD/REP family ATP-dependent DNA helicase [Butyrivibrio
           proteoclasticus B316]
 gi|302394602|gb|ADL33507.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 739

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 96/541 (17%), Positives = 171/541 (31%), Gaps = 110/541 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y    K   ++D++D +I    +LK       +     +   +I +DE QDTS I
Sbjct: 182 DMYDKYNAELKARSLMDYDDQMIYAYRMLKSSPD---LLDYYRKLYRYICVDEAQDTSKI 238

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  +I  L  +             LF VGDE QSIY F  A P+ +L  ++         
Sbjct: 239 QHMIISLLAGE----------NGNLFMVGDEDQSIYGFRAAYPEALLNFEKE-------- 280

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +   ++ +  ++RS A I+ + D       N       +T                   
Sbjct: 281 HRGAKVLVMDQNYRSNAKIVKLADMFIQKNFNRHEKHMRATR------------------ 322

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                           S+        Q +    +A+ +                      
Sbjct: 323 ----------DAAADISYVVLDTRKRQYNYLLDMAKSLDTE------------------- 353

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 VL R  +    +  +       Y+I    +       H  + D++ + +F L+ 
Sbjct: 354 ----TAVLYRDNESILPLVDMLDREDMPYRIK---SADMAFFTHRIVVDVVNILKFALNP 406

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D   F+ +         + D  ++C              +      +   +V       
Sbjct: 407 MDPELFMKIYFKFQTYLRKPDAEQMCQMADYKHYGILDAVEDIEVNKNTLSNVRSLRTHF 466

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
            ++A   SP      I               ++    + E L         + +++Q  +
Sbjct: 467 RNMA-ADSPAKAINRINKYMGYGDYLRDNNMDDNKLFILEMLAQ-------NEATIQGFL 518

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             LE+    I    +    ++ + TVH++KGLE   V L+D  + VF  K IK       
Sbjct: 519 DRLEELRTIITEKENDYSAKLILSTVHSSKGLEYSNVILIDVINGVFPSKMIKNF----- 573

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       +K   EE  R+ YVGMTRA D+L I K+ +  
Sbjct: 574 ----------------------KTALPSEKRDYEEERRIFYVGMTRAKDKLTIFKYGDAP 611

Query: 672 N 672
           +
Sbjct: 612 S 612


>gi|325963969|ref|YP_004241875.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
            Sphe3]
 gi|323470056|gb|ADX73741.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
            Sphe3]
          Length = 1115

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 112/986 (11%), Positives = 256/986 (25%), Gaps = 165/986 (16%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYV-------SLSMETGNPTILKKAQTL 53
            L++RF   L+ S        W    F V    K         +  + +G    L   + L
Sbjct: 124  LRDRFTARLDRSLSTTPARTWASYAFDVIRRAKAEGILPLSSAPRLLSGPEQDLIIKELL 183

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--R 111
            +              +     T+                    ++++++  D  I+    
Sbjct: 184  EGHRLPGLELPWPEDVEGALETR------------------GFRQEVRQLFDRIIESGRT 225

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN--CVLDFEDLIINTNDLLKKRDVSAWI 169
                     +        A  L A Y +          D   +I     + +    +   
Sbjct: 226  PEDLVRLGHQCGRPDWIAAAALYAEYRDVLDLRMPEAFDPAGIITAARQIFQD---APGF 282

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                   +  IL+D++Q+ +   +E++  +              +  +        +  F
Sbjct: 283  LAAERDRLQVILVDDIQEANPAVFELLADVAG-----------GKDCYVAFSPDTVVQGF 331

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA P  V    R+    +    +      L  + R   ++      +        G   
Sbjct: 332  RGARPDLVAELPRLLSPNSPVVERP-----LRYAHRHAPELAEAWLGLAGRISQRAGG-- 384

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                               QL  ++      Q +   E+            SA    R +
Sbjct: 385  -------------------QLARRLDKLDGEQPSGAVEAHLV--------QSAVHELRYV 417

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
            A  I                      + V+VR                   ++ V  +  
Sbjct: 418  AQRI---------LDQHINHGRDLAQLAVIVRNGSQVSEFQRYLSGQGIAVRVPVAES-- 466

Query: 410  FILTDHLAIKDLMALGRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
              + D +A++ L+      L  +     + V +L S +   +  ++ ++       E + 
Sbjct: 467  -AVRDEVAVRPLLDAFAIALDPDLLTPEAAVSLLTSRIGGATSIELRRLRQSLRREELLG 525

Query: 468  EYIQKFANCGISKF----------------QHVIKYIHELIHIAQF--CSPHDFFTLILG 509
               +      +                   +   + I      A     +       +  
Sbjct: 526  GGGRTSDALLVEALLEPGALSTLGIEGRAARRTARMIQAGRTAAAEPGANAESVLWALWN 585

Query: 510  AKKGRQQFIS------RFGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISEL--EQY 557
            +    + +          G      LD      +   R  +Q   +  ++ +  L  ++ 
Sbjct: 586  STGLDRAWTETALAGGPHGARADRDLDAMMALFHTAERYVDQMPGAGPEQFLEYLLNQEL 645

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
            P     A +   + V ++T  +A G E PVV +      V+ +  ++   +         
Sbjct: 646  PMDTLAARAQVDDAVELLTPASAAGREWPVVIIPGLQEGVWPNTRLRGELL-------GS 698

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                          +        +  + +  R     ++RA + L+    S+  ++  S 
Sbjct: 699  TLYSDAVEHGAAYALQRDPLSRLRDIRYDELRSFSTAVSRARELLVCTAVSSDDDQPSSF 758

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSI------------NKDEWIAYEWSTHHPENTPLE 725
                  +  D         +  +T                K+   A E +         E
Sbjct: 759  LDYVAPLPPDQDGRPFTAVERPMTLRALVAELRQHAQLDGKETPQAEEAARVLAHLAAAE 818

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES-------LLSDNQ 778
                         +     S           ++PS ++T  K+ L+          + + 
Sbjct: 819  PPVAGAHPQSWWGLLPLTSSEAVVPPAGTVFVSPSKVETVQKSPLDWFVQAAGGEAATDF 878

Query: 779  TFNRGLIIHKLLQVIFTLP-EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE-NPM 836
              + G ++H + Q +            +  +     K                ++     
Sbjct: 879  ARSLGTLVHAIAQELPEASGPEYVAELVRRWPALGMKDNWEGRLD--FQRAEAMVRKLAQ 936

Query: 837  MTTAMSCDSYSEVSVSGKINCPKKDI----------IISGRIDQISIS-QQNIFIFEYKT 885
                M  +  S V V          I          ++ G++D++ +  +  + I + KT
Sbjct: 937  YVLLMRSEGRSLVGVEQDFEVALGRIPVDGAGDREAVLRGQVDRLELDSEGRLVIVDLKT 996

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKIL 911
                P + E        QL  Y+  +
Sbjct: 997  GKRQPSKGELSR---HPQLGAYQAAV 1019


>gi|293610237|ref|ZP_06692538.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827469|gb|EFF85833.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 684

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 103/660 (15%), Positives = 209/660 (31%), Gaps = 131/660 (19%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 90  AASEIVARVEQHVGAQAKGLRASTFHTFCMYLLRRN-----PQAFGLNQFSIIDRDDQLL 144

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +   +         T   
Sbjct: 145 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQTKLSEALIKQLPDAYEHKTQ-- 195

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-WIRYKIDQEINHILIDEV 185
                 L   YE+ K++   LD++D++      L+  +    W+          +L+DE+
Sbjct: 196 ---IAELMKTYEQRKRERNFLDYDDILSIVAVHLQNSEALTNWVAGFCQA----LLVDEM 248

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 249 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 297

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      ++ L L++RST +IL + + + +           +      +       
Sbjct: 298 --------DAEVLTLALNYRSTQEILDLSNWLLAHSPIDYQKQLQAHRGQGQKPQLHLFG 349

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              +                                    A  IA  +            
Sbjct: 350 NEFE-----------------------------------EANWIAQDLITRHQQG----- 369

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D +VLVR       +       +    I         L +   +KD+++L 
Sbjct: 370 -----ANWHDHMVLVRSGYSARYLEGAFIAAE----IPYRFIGGVKLLESAHVKDVLSLL 420

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R + +  DDL+++  L +      +    K+  +      V E  Q+    G    Q ++
Sbjct: 421 RIVSNPHDDLAWMRFL-TLWDGIGDVGASKLAQELMGIVDVEERCQRLERHGKVPLQAIL 479

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             + +L              L L A   + +  +    +    L +F +   +  +   S
Sbjct: 480 -ILKQL--DVLQQHVEASIGLALDALGEQLE-QNYKTKDWSRRLKDF-DLVKQLARKHAS 534

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             + L   + +     +   +A+ + V ++T+H+AKG E  V ++               
Sbjct: 535 LGEFLEEYVLEPISVSEIEKAADQDLVTLITIHSAKGAEQKVCYVP-------------- 580

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                   N              EE  R+LYV +TRA ++LI+ 
Sbjct: 581 --------------------HVSPNQYPYARAQGDFDDVEEERRVLYVALTRAENELILT 620


>gi|326383309|ref|ZP_08204997.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198059|gb|EGD55245.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1101

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 113/1009 (11%), Positives = 262/1009 (25%), Gaps = 138/1009 (13%)

Query: 7    LSLNESYEL-IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            L+ N      +  ++          +   +   +     +       LQ ++        
Sbjct: 79   LAANRRAATQLRAEITRRVLSAGGSLGGALREPLVRTVHSYAFAVLRLQASAHGNPPPRL 138

Query: 66   F-----SLLSSFFLTQKFTPQKNIITQEINKKS--PDLKEKLKKSQDEFIK--IRDRFNT 116
                   ++    L        +     +          + L+       +  +  +   
Sbjct: 139  ITGSEQDVILRELLAGDVEDGADYWPASLRPALTTDGFAQALRDLMMRAAERGLGPQDLA 198

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCVL------------DFEDLIINTNDLLKKRD 164
                         A +    YEE       +            D  +LI +         
Sbjct: 199  ELGRTHDRPEWVAAGHAFRQYEEGMLLRGAVGLDAPEASVTAVDAAELIGSALSAFATDP 258

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                +     Q I H+L+D+ Q        +IR +           +   +     D  Q
Sbjct: 259  D---VLAGQRQRIRHVLVDDAQHLDPQAASLIRLI----------GTGADSTVVASDTDQ 305

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            S++ F GA+P+                      I L   FR +      V+ V       
Sbjct: 306  SVFGFRGADPRFANAVADD---------DPDRDILLENDFRGSP----AVNAVGRALALR 352

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
               +                 G   +     +  ++            FD +P    A  
Sbjct: 353  LPGARPHRYPTAAEPDDPEHRGHADVRVFSSAAKEATAVADMMRRAHLFDGVPWSEMAV- 411

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
                I  ++   +       +     +      + + +++     + + R         V
Sbjct: 412  ----IVRSVPRALPAIRRAFSSAGVPMATPATDIPIHRQRAVAAFSLVLR---------V 458

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             G    +  D +       +G    +    L               D +  +     + E
Sbjct: 459  AGGGPPLDADEVTALLTGPVGAADPTNLRRLRRGIRRIDEARGREADSLDSLARALDDPE 518

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELI-HIAQFCSPHDFFTLILGAKKGRQQFIS---- 519
             +  Y+    +      + V K +              +       A    +++ +    
Sbjct: 519  LMGTYLGGLTDFEAIALKQVRKVVDAARTAHTAGVGVEETLWRAWSASGLERRWTAQSLR 578

Query: 520  --RFGNEVIDVLDEFL---NFTLRN-EQNSYSSLQELISEL-EQYPPTIKRAHSANHNEV 572
              R G++    +D  L          +    + +   +  L +   P   R   +    V
Sbjct: 579  GGRGGDQADRDMDAMLAMFEAAGTFADNLPAAGVLGFVDYLGQLQIPRESRVAVSGVESV 638

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
             +++ H A G E  VV +      ++     +   +      D    +            
Sbjct: 639  AVVSAHAAAGREWDVVAVPGVLDGLWPSLRSRGSVLHTPALIDLLSGV---------GAD 689

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
            +            +  RLL V  TRA  +L++    + S +  S  R   ++        
Sbjct: 690  AVDTVARGAVMLADERRLLLVACTRARSRLLVTAIEDGSGDA-SPSRFVPEIAEALGGYG 748

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ--------------- 737
                +      ++          +   E   +           ++               
Sbjct: 749  ATEPESADEIPLDPGVRRVLSLPSLVAELRAVAVAGADASGGPDERTRVAAALLADLAQA 808

Query: 738  -----KIPKKL-------FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN---- 781
                                P+    N P  L+PS +D   K +L  +L  +   +    
Sbjct: 809  GVSGAAPADWFGLVGPSTEVPLWTPENGPRTLSPSNVDALTKCSLRWMLERHGGRDGDAE 868

Query: 782  ---RGLIIHKLLQ----VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
                G ++H L+Q     +     +   + +    +  A+ + A+E +     +T   + 
Sbjct: 869  QAVTGTLVHTLVQAVAGNLDRTEVNAALHEVWERVSSPAQWYSARELERAEGMLTNFRDW 928

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKD-------IIISGRIDQISIS-QQNIFIFEYKTH 886
              ++      +  EV V   +     D       + + GR+D++    +    + + KT 
Sbjct: 929  LRISREDLTAAGVEVEVDATLPTGVDDHGNALLPVRLVGRMDRLETDSRGRPVVVDVKTG 988

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILK-----DSYPNKSLVCLLIYVSEP 930
             +  + ++        QL+ Y+  L+          +     L+YV+  
Sbjct: 989  KNPVRAVDAEV---HPQLATYQLALRLGGVTGLGSTEPGGGRLVYVASA 1034


>gi|207738731|ref|YP_002257124.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           IPO1609]
 gi|206592099|emb|CAQ59005.1| atp-dependent dna helicase II protein [Ralstonia solanacearum
           IPO1609]
          Length = 691

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/718 (14%), Positives = 206/718 (28%), Gaps = 126/718 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R    L+     +            S        ++          A+ L++ ++   +
Sbjct: 62  RRAASELSSRAGHLLARAMQGSTGTRSAAGTTYQTALPWAGTFHGIGARLLREYAERIGL 121

Query: 63  EERF---SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
              F       S  L      + N+ T+            +                 K 
Sbjct: 122 APDFTIHDRSDSADLLNVVRHELNLSTKARRFPLKQTCLAIYS--RAINAESPLDAVLKQ 179

Query: 120 FKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                A      + L   Y EAK+   VLD++DL++  + +     ++A I        +
Sbjct: 180 HFPWCAMWQAQLRTLFDAYVEAKQAQHVLDYDDLLLYWHAMASDAGLAAEI----GARFD 235

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HIL+DE QDT+ +Q  ++R+L              R L  VGD+ QSIY+F  A  + +L
Sbjct: 236 HILVDEYQDTNRLQATILRAL----------RPDGRGLTVVGDDAQSIYAFRAATVRNIL 285

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              R   +           + L  ++RST  IL   + V          +  +     HR
Sbjct: 286 DFPRHFTR-------PARTVLLERNYRSTQPILDASNGVMRFATERFAKTLWTDRASTHR 338

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                                L      +  AR +A  +     
Sbjct: 339 P-----------------------------------RLVSVRDEAEQARCVAEQVLQHRE 363

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                       +  K   VL R    +  +            I  V        +   +
Sbjct: 364 GG----------LALKSQAVLFRTASHSAPLEIEL----TRRNIPFVKYGGLKFLEASHV 409

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           KD++++ R+  +  + ++   +++  L         ++     E       +   A+   
Sbjct: 410 KDVLSVLRWAENPRNRIAGFRVIQ-LLPGAGPATAARVLDAMAEAADPIAAL--LAHEPP 466

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ----QFISRFGNEVIDVLDEFLN 534
           ++       +  L+   +       +   LGA         + +          LD+   
Sbjct: 467 ARLAGDWAALMTLMATLRTPKHDAAWAGELGAVGAWYAPHLERLHDDAAVRQGDLDQLAR 526

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFL 590
                     +S +  ++E+   PP +    S     + + + + T+H++KG E   V+L
Sbjct: 527 MAATY-----ASRERFLTEMTLDPPELTSDESGAPYRDEDYLILSTIHSSKGQEWKAVYL 581

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           ++                                           +        EE  RL
Sbjct: 582 LNAVDGCMP----------------------------------ADLGAGSHDELEEGRRL 607

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           LYV MTRA D L I         +++     +     +      +  +    +    E
Sbjct: 608 LYVAMTRARDHLDILVPQRFYVTQQTPNGDRHIYASRTRFIPPALLPLFEACAWPPPE 665


>gi|325127936|gb|EGC50839.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis N1568]
          Length = 1010

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 113/749 (15%), Positives = 221/749 (29%), Gaps = 107/749 (14%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKN 144
              KK       +     +        N  +  +        L L  YLN    E KK  
Sbjct: 309 AGLKKGKTPDAAVFAELQKLADFGRDLNALEEAEEATMIRLQLDLIGYLNRSLAEMKKSR 368

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
               F+DL+++ +  L     +  +   + +     LIDE QDT  +Q+E+ + +     
Sbjct: 369 RERGFDDLLLDVHTALTDNPHAETLARAVAENWETALIDEFQDTDPLQYEIFQKIF---- 424

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                 +  R LF VGD KQ+IYSF GA+    L+                    L  ++
Sbjct: 425 -----IAQNRPLFLVGDPKQAIYSFRGADIYAYLQAAED----------ARHRYTLATNY 469

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS A ++  +  +F + E    L     + +   ++R     + +     V       N 
Sbjct: 470 RSHAALIGSIGALFRLKERPFVLENIGYSEV--GAARAESRLSPERPAVQVRWLHENDNE 527

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
           +            ++      A   A  I+  +        N K R +Q+ DI VLVR  
Sbjct: 528 K----------ANKDVLRRRAADYCADEIAHALNEAAGGRLNFKGRPLQSGDIAVLVRTH 577

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            +  +++   +      ++  V   R  +        L AL  F L      +   +L S
Sbjct: 578 NEAVMVSAALK----KRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTS 633

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            +F +    +        E     E                       +           
Sbjct: 634 GIFGYDAQQLHDFNQNESEILHWAESA------------------RTALDNWNQYGIFAA 675

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISELEQYPPTI 561
                       + +SR     +    + L        +  + ++L + + +        
Sbjct: 676 MQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAALHKWLRDQISLAGNN 735

Query: 562 KRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                     ++ + V+I+T+H +KGL+ P+V+         +     ++    +   + 
Sbjct: 736 SGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTEL 795

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                         +  D  K        E  RLLYV +TRA +QL I    ++      
Sbjct: 796 LAKAQ---------LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTADNP 846

Query: 677 NQRTWYDMVY---------DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                  +            +   D      +    +  +      ++       P    
Sbjct: 847 LAYLIEGLPQDSRETVRRAYACEKDGIAMLKRNWRRVADNAPSGTNFAFTEDAPPPAAYR 906

Query: 728 ETIKQLMDEQ------------------KIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
               Q  +                     + +   +P   + +    L+ + I      +
Sbjct: 907 GNAGQTAEFAANSIPERRFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAEISVAAMPS 966

Query: 770 LESLLSD-------NQTFNRGLIIHKLLQ 791
                SD        +    GL +H++L+
Sbjct: 967 ETPTASDGISIHNFPKGTQAGLCLHEILE 995


>gi|83749766|ref|ZP_00946741.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551]
 gi|83723556|gb|EAP70759.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551]
          Length = 710

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/718 (14%), Positives = 206/718 (28%), Gaps = 126/718 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R    L+     +            S        ++          A+ L++ ++   +
Sbjct: 81  RRAASELSSRAGHLLARAMQGSTGTRSAAGTTYQTALPWAGTFHGIGARLLREYAERIGL 140

Query: 63  EERF---SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
              F       S  L      + N+ T+            +                 K 
Sbjct: 141 APDFTIHDRSDSADLLNVVRHELNLSTKARRFPLKQTCLAIYS--RAINAESPLDAVLKQ 198

Query: 120 FKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                A      + L   Y EAK+   VLD++DL++  + +     ++A I        +
Sbjct: 199 HFPWCAMWQAQLRTLFDAYVEAKQAQHVLDYDDLLLYWHAMASDAGLAAEI----GARFD 254

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HIL+DE QDT+ +Q  ++R+L              R L  VGD+ QSIY+F  A  + +L
Sbjct: 255 HILVDEYQDTNRLQATILRAL----------RPDGRGLTVVGDDAQSIYAFRAATVRNIL 304

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              R   +           + L  ++RST  IL   + V          +  +     HR
Sbjct: 305 DFPRHFTR-------PARTVLLERNYRSTQPILDASNGVMRFATERFAKTLWTDRASTHR 357

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                                L      +  AR +A  +     
Sbjct: 358 P-----------------------------------RLVSVRDEAEQARCVAEQVLQHRE 382

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                       +  K   VL R    +  +            I  V        +   +
Sbjct: 383 GG----------LALKSQAVLFRTASHSAPLEIEL----TRRNIPFVKYGGLKFLEASHV 428

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           KD++++ R+  +  + ++   +++  L         ++     E       +   A+   
Sbjct: 429 KDVLSVLRWAENPRNRIAGFRVIQ-LLPGAGPATAARVLDAMAEAADPIAAL--LAHEPP 485

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ----QFISRFGNEVIDVLDEFLN 534
           ++       +  L+   +       +   LGA         + +          LD+   
Sbjct: 486 ARLAGDWAALMTLMATLRTPKHDAAWAGELGAVGAWYAPHLERLHDDAAVRQGDLDQLAR 545

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFL 590
                     +S +  ++E+   PP +    S     + + + + T+H++KG E   V+L
Sbjct: 546 MAATY-----ASRERFLTEMTLDPPELTSDESGAPYRDEDYLILSTIHSSKGQEWKAVYL 600

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           ++                                           +        EE  RL
Sbjct: 601 LNAVDGCMP----------------------------------ADLGAGSHDELEEGRRL 626

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           LYV MTRA D L I         +++     +     +      +  +    +    E
Sbjct: 627 LYVAMTRARDHLDILVPQRFYVTQQTPNGDRHIYASRTRFIPPALLPLFEACAWPPPE 684


>gi|149193951|ref|ZP_01871049.1| HELICASE [Caminibacter mediatlanticus TB-2]
 gi|149135904|gb|EDM24382.1| HELICASE [Caminibacter mediatlanticus TB-2]
          Length = 905

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 136/843 (16%), Positives = 259/843 (30%), Gaps = 194/843 (23%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC----VLDFEDLI 153
           + L+    E++++   +   K        L     L + Y+  K +       LDF+D+ 
Sbjct: 251 DILESKFFEYVELIKEYLYKKYLSKEAYILKTIFSLYSKYKNKKWEIKKKENYLDFKDIE 310

Query: 154 INTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
               ++L +    + ++ +++D +INHILIDE QDTS+ QW +I  L E+   G+  +  
Sbjct: 311 HLVYEILVENHLDNQFLYFRLDSKINHILIDEFQDTSITQWRIIYPLVEEIKSGEGQN-P 369

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
            +T F VGD KQ+IY F G          +  +              L  ++RS   I+ 
Sbjct: 370 FKTFFYVGDTKQAIYRFRGGSSFLFDYVYKSLKPD------GMRQESLNTNYRSGEVIVD 423

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
            V+KVF++ E A                     G V++ E  V +  S  N ++  W S 
Sbjct: 424 FVNKVFNLNEKA-----------------NKDGGYVEIRENKVDEESSSKNYKRYDWRSN 466

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
              + +                              + ++ KDI +LV    D   +   
Sbjct: 467 LKEVLEFMFE--------------------------KGVRDKDIAILVYNNDDILEVADF 500

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                N     VV +    + +  + + +++L +F+                        
Sbjct: 501 IVENFNK---KVVTSTTKEIINQESARAVISLMKFL------------------------ 533

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                 +      ++E++                         +   P      IL    
Sbjct: 534 ----YYKEKGKLFLFEFLTFVGKEFDE----------NFDTQIKEDRPSKMIKEILDKYD 579

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
                           L   +          Y +L + + ++E          S++ + +
Sbjct: 580 LWD----------EATLKLLIYSMR------YDTLIDFVEDIENCDEV----LSSDIDGI 619

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            I+T+H +KGLE   V ++D      +     K+       +   I       +  ++  
Sbjct: 620 NILTIHKSKGLEFENVIVID--RMKKNSNRGIKLLYDYEGIELKNIRYKQSGMEILDDEY 677

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           +  +   ++   ++   + YV  TRA + L I K+   SN  K  +    +++       
Sbjct: 678 ARTLTKEEELELKDKENVEYVAYTRAKNSLFILKNEKDSNFVKLQEYDGENILGKFSVEK 737

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           +   K        +  +   +      E  P E E                         
Sbjct: 738 KEEIKKDNKKFSLEINYYGKQGYKKEKEYKPNEYEA------------------------ 773

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
                                        +GL IH L + I                 + 
Sbjct: 774 ---------------------------IYKGLAIHSLFE-IEDEDYT---------LNRY 796

Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
                 KE K +                ++   Y E+         KK+    G ID + 
Sbjct: 797 GAFCNIKEVKEIYNRAKEY---EEYKRLLNGQIYKELPFVAIKEDEKKE----GIIDLMI 849

Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            +++ I   +YK+    P +       +I QL  Y   +     NK     + YV   ++
Sbjct: 850 ENEEIII-IDYKS--TKPDDE----RGYIQQLKFYIDNISKI-KNKKTKGFIFYVDSLEL 901

Query: 933 FII 935
             I
Sbjct: 902 KEI 904


>gi|203284532|ref|YP_002222272.1| exodeoxyribonuclease V, beta chain [Borrelia duttonii Ly]
 gi|201083975|gb|ACH93566.1| exodeoxyribonuclease V, beta chain [Borrelia duttonii Ly]
          Length = 1147

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 128/851 (15%), Positives = 270/851 (31%), Gaps = 121/851 (14%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + +Y+    E       V+D + ++ N    L+  +    +   I      ILIDE Q
Sbjct: 308  YKILQYIEKELENIINTTNVIDQKHIMTNFKKHLESSEHK--LLTSIKNRHKIILIDEAQ 365

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D    Q ++   L          +S    +  + D KQ IY+F  A+            +
Sbjct: 366  DLDQTQIKIFELL----------NSCGIKIVFIADPKQIIYTFRNADISF-------YNQ 408

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               +  +K + I L  ++RS   ++  ++ +F                  +  +   ++ 
Sbjct: 409  DIKDKIKKDARITLLTNYRSNKKLVKPLNIMFERI---------------YNKTHTDKIE 453

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             ++  +      +               ++ Q      + ++ A     ++    I+ N 
Sbjct: 454  QIEFVQLQTEPKNDNNKIFINDQEIKAINIIQAEENDNVFQKTALITKYLLINGKIYDNN 513

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            + R I+  DI VL R  K+   I    +       I      +          ++  L +
Sbjct: 514  QLRQIEKSDIKVLCRTSKEINFIDRELK----KNNIKTH-KTKEPFFKTKEFNEIFYLVK 568

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +  ++D  +   +L S + N   +    +         + E I        ++   +++
Sbjct: 569  CLSRKQDFKTLNYVLTSKMINLPWELHLNLIQNNKIK-NIEEAISDIIYLLENQEITLMQ 627

Query: 487  YIHE-------LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
             I E        I++A+  +  +F       +  ++  I+    E +   +  LNF L+ 
Sbjct: 628  AIDEIISKQDLWINLAKDLNNDEFTKFAQSKQNYKENLINENKFEELQNYESSLNFILKT 687

Query: 539  -NEQNSYSSLQELISELEQYPPTIKRAHSANH-----NEVRIMTVHTAKGLESPVVFLVD 592
              +  +  SL  ++ +L                      + I+T+H +KGL   +VFL+ 
Sbjct: 688  YYKDKNIESLICILEDLILGRDIENIEQYEEQTNNDNQSIEILTIHKSKGLGFNIVFLIG 747

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                  +      +     LN+         + K     + +  +  K     E   + Y
Sbjct: 748  DTQNNDTLIKKTDIFYKYYLNN---------KIKYDFLKLKENQQLAKNKILNEEKNIFY 798

Query: 653  VGMTRASDQLIICKHSNTSNE--KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            VG TR+   L I       N+  + +   T   +  +    +         + IN D+  
Sbjct: 799  VGTTRSKFALFIINQGTIINKMLRLAEINTIDGINLNFNIPNLNNYNQYNQSDINNDQQK 858

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
            A       P N  L R+E I            +   I +D            +T     +
Sbjct: 859  AITLIPPPPINKYLFRQEYIHSYTSLTSSYNTVNQNITDD------------ETYDNDAI 906

Query: 771  ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI---------TSYCTKNAKLWPAKEY 821
             +  +  +  + G I+H++++ I         +                 N+KL      
Sbjct: 907  HNKNTLPKGKDIGNILHEIMKDINFNDAKDSLSNFKKNNSMLIQQKIEYFNSKLNTPIIQ 966

Query: 822  KNLLLSITRLLE------NPMMTTAMSCDSYSEVSV-----------------SGKINCP 858
            + L+  I  +L       +  +      +   E+                     +++  
Sbjct: 967  ELLIKMIYNMLNKKINFIDTKLCEI--QELQKEMEFLIKINTKIYKQMSLFKQYNRLDFM 1024

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEK 909
              +  I G ID I      I+I +YKT++      ++             +  Q  IY  
Sbjct: 1025 LNNGYIKGIIDLIFKINNKIYILDYKTNYLGENLQDYRLSHLTKKMKQENYDLQYKIYTL 1084

Query: 910  ILKDS-YPNKS 919
             +K   + NK 
Sbjct: 1085 GIKKILFKNKE 1095


>gi|5738205|gb|AAD50296.1|AF173009_1 rep helicase [Legionella pneumophila]
          Length = 467

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 79/525 (15%), Positives = 161/525 (30%), Gaps = 129/525 (24%)

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                +I H+L+DE QD++  Q+ +++ L                   VGD+ QSIY++ 
Sbjct: 4   EYWQNKIRHLLVDEYQDSNSSQYLLVKKLAG----------VRAHFTVVGDDDQSIYAWR 53

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+P+ + + ++   +          II+L  ++RST+ IL   + + +  ++       
Sbjct: 54  GAKPENLAQLQKDFPR--------LKIIKLEQNYRSTSRILHAANHLIAHNQHLFEKKLW 105

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           S              G  +L   V  + +        +                  R I 
Sbjct: 106 SDL------------GHGELLRVVSCKDEQDEAEHVIAGFG---------------RAIN 138

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
           Y I                  +  D  +L R      +   + R     + I    +   
Sbjct: 139 YVIGQ----------------KYSDYTILYRGNHQARIFEKVLR----HHGIPYHISGGQ 178

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEY 469
                L ++D+ A  + + ++ DD +F+  + +P     E  +  +    +    ++Y  
Sbjct: 179 SWFAKLEVRDIFAYLKLLCNEADDAAFLRAITTPKRGIGESSLEALGRYAQSRGISLYHG 238

Query: 470 IQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHD-------------FFTLILGA 510
                     A+     F     ++ ++       S  +             F   ++  
Sbjct: 239 SDHLALSEFVADKQRMIFHDFKLWMEDIKKRISSDSVLEHLRHDVDGIDKLIFMNNVILP 298

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
            + ++++I         ++    N        +  S    I                  +
Sbjct: 299 PRHKKKWIMYGSFWNGLIVCWIRNL-------NNRSWMLWIDWYWSIYWNNPMNLQVMWS 351

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
             ++MT+H +KGLE P ++LV    ++  H                              
Sbjct: 352 --QLMTLHASKGLEFPFIYLVGMEEELLPH------------------------------ 379

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                   +     EE  RL YVG+TRA   L            +
Sbjct: 380 -----RVSIDDDQIEEERRLAYVGITRAQKGLCFTLAKQRRRAGE 419


>gi|293572921|ref|ZP_06683871.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980]
 gi|291607049|gb|EFF36421.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980]
          Length = 744

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 91/553 (16%), Positives = 187/553 (33%), Gaps = 110/553 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L    +E K++  +L+F D++ N    L+  +    I+  I Q+ +++ IDE QDT+ +Q
Sbjct: 273 LLTELQEQKRRQQLLEFNDVLQNLKSALENDE----IQRYIGQKYDYLFIDEFQDTNPLQ 328

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           WE+++ +T++         +   L  VGD+ QSIY F G+EP  +   ++          
Sbjct: 329 WEIVKRMTKE---------NGIKLIVVGDDDQSIYGFRGSEPAYIKNFEKEYPT------ 373

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                + L  ++RS A I+   +++ S  +N            +       + G ++ + 
Sbjct: 374 ---KTLFLLTNYRSRAAIVQGANRLISYNKN--------DRIPKAMIPAQKEAGIMEAYL 422

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
              ++ +S                          + +   I + I           +  +
Sbjct: 423 FSDTKAES--------------------------QWLISQIQSFIQ----------KNGK 446

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKI----SVVGNDRFILTDHLAIKDLMALGRFI 428
            K+ ++L R    T  +          + +       G            K +    +  
Sbjct: 447 YKESIILYRSASQTQQLVQSLLKTNIPFVLEADSPYEGIFGIKFFQQFYQKIVHW--QTA 504

Query: 429 LSQEDDLSFVCMLKSPL---FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
            + +        L   L       +++  +  + +++   + +YI        SK   + 
Sbjct: 505 QNPQKKNQAYQQLLRQLMVDCYLKKNECDQYFSPKYQNIAITDYILSVRPNLKSKSAEIR 564

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           ++   L    Q    +      L       +          + + E +            
Sbjct: 565 QFEEALRKTDQHQEIYSLVQSYL----HLPRIAKEIDQSDQEWIREEVKQHATF-----R 615

Query: 546 SLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           S+Q L  E++     +K    A      + + I ++H +KGL    VFL+        + 
Sbjct: 616 SIQTLSQEIQATAKELKTRLIAYRQGKLDALCIQSIHKSKGLSYRNVFLIGCNEGSLPYN 675

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              +  ++ S                        IK    +T EE  RL YV MTRA ++
Sbjct: 676 GATEKKVIDSNE----------------------IKAEPATTIEEERRLFYVAMTRARNR 713

Query: 662 LIICKHSNTSNEK 674
           L +C     +  K
Sbjct: 714 LYLCVPQMKNTRK 726


>gi|74317324|ref|YP_315064.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
 gi|74056819|gb|AAZ97259.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259]
          Length = 702

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 112/735 (15%), Positives = 211/735 (28%), Gaps = 145/735 (19%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    E I + +             +       G   + + A    L  A    
Sbjct: 83  RRAADEMVRRVERILRQVAAGRPRLAGAKLAWAGTFHSIGARLLREYAPRIGLDPAFTIH 142

Query: 61  CIEERFSLLSSFFL------TQKFTPQKN----IITQEINKKSPDLKEKLKKSQDEFIKI 110
             E+   LL+          T K  P+KN    I +  +N  +P L + L++     ++ 
Sbjct: 143 DREDSADLLNLVRHELGLADTGKRFPRKNTCLAIYSAAVNTLAP-LGDVLQRRYPWCVEW 201

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            D                    L   Y EAK+   VLD++DL++    +  +  ++    
Sbjct: 202 EDELK----------------RLFLAYVEAKQAQHVLDYDDLLLYWGQIAGEPTLARE-- 243

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +    +HIL+DE QDT+ +Q  ++R+L              R +  VGD+ QSIY+F 
Sbjct: 244 --MGARFSHILVDEYQDTNALQASIVRAL----------KPDGRGVTVVGDDAQSIYAFR 291

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA  + +L                  ++ L  ++RST  IL   + V +           
Sbjct: 292 GATVRNILDFPGQFA-------PPARVVTLERNYRSTQPILAAANGVIA----------- 333

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                     R  +     LW +  S    Q    ++               +  A  + 
Sbjct: 334 ----------RASEGYAKSLWSERESSERPQLVSVRD--------------EADQAAFVV 369

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +                        VL R  + +  +        N  ++  V     
Sbjct: 370 EEVLARREAGIALKAQ----------AVLFRAAQHSATLEIEL----NRRQVPFVKFGGL 415

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEY 469
              +   IKD++A+ R+  +  D ++   +L+  P               +     +   
Sbjct: 416 KFLEAAHIKDVLAVLRWHENPRDRVAGFRVLQLMPGIGPKTAGQVLDGLAQVHDVRMALQ 475

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
             +        +   +  +  L        P +    I        + +          +
Sbjct: 476 EARVPPAAAHAWDDFLGLVAAL-AQPGATWPAEL-ETIGSWYAPHLERLYDDAAVRQGDI 533

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLES 585
            +              S Q  ++EL   PP      +     + + + + T+H+AKG E 
Sbjct: 534 SQLEQIARTY-----PSRQRFLTELTLDPPDATSDEAGVPLRDEDYLILSTIHSAKGQEW 588

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V+L++                                                    E
Sbjct: 589 AAVYLLNAVDGCIPSDLATGSP----------------------------------QEIE 614

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RLLYV +TRA D L +         ++S     +     +      + ++       
Sbjct: 615 EERRLLYVALTRAKDHLQVVVPQRFYVTQQSGYGDRHVYAGRTRFIPPGMSELFDARVWP 674

Query: 706 KDEWIAYEWSTHHPE 720
                        PE
Sbjct: 675 VRATETAPACAPPPE 689


>gi|227518367|ref|ZP_03948416.1| possible ATP-dependent deoxyribonuclease, subunit A [Enterococcus
           faecalis TX0104]
 gi|227074045|gb|EEI12008.1| possible ATP-dependent deoxyribonuclease, subunit A [Enterococcus
           faecalis TX0104]
          Length = 708

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 81/408 (19%), Positives = 155/408 (37%), Gaps = 29/408 (7%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           +++ +++      LKK          +    +          + K     Y   K+   +
Sbjct: 310 KQLREQNKKALNDLKKQLFTLSPDAMKQVLKEATPIVQEMAHVGKQFMEAYGAEKRLKNL 369

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +DF DL   T  +L K     W   +      ++ + +L+DE QD + +Q  ++  L   
Sbjct: 370 VDFNDLEHYTLAILAKNQADGWHASEASVYYREKFDEVLVDEYQDINQLQESILYWLRRP 429

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   S+   LF VGD KQSIYSF  A+P   + +           G++   I L  
Sbjct: 430 L-------STEGNLFMVGDVKQSIYSFRLADPTLFIEKYNQY-----GQGKEGKRIILAE 477

Query: 263 SFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
           +FRS  D+L   + VFS   + +   ++ D +  + H   +  +         +  +  +
Sbjct: 478 NFRSRKDVLDFTNLVFSQLMDERVGQIAYDESAALVHGFDQFSEAADYSTELLIYEKKAT 537

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK---KRVIQAKDIL 377
           +     E  +       +      +    A  I  +I  + +  + K    R I  +DI+
Sbjct: 538 ESVEFPELQSPELLIEDKTEGELYV---TALKIRELIDQNFLIYDKKLKTDRPITYQDIV 594

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +L   +K+   I  + + L+    I V  ND         I+ ++AL + I +   D+  
Sbjct: 595 LLTPTKKNNLTILDVFKSLE----IPVQVNDAQNYFQATEIRTMIALLQLIDNPYQDIPL 650

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
             +L+SP+    E+++  I     ET + YE    F        +  +
Sbjct: 651 AAVLRSPIVGLKENELVLIRLANKET-SYYEAFLTFNQKMEPTMEEAV 697


>gi|295099325|emb|CBK88414.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Eubacterium
           cylindroides T2-87]
          Length = 558

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 97/587 (16%), Positives = 200/587 (34%), Gaps = 51/587 (8%)

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           + ++I  D +     ++ I    I +L R            + +   Y+I V+       
Sbjct: 21  VYDLIANDIL--TKHEQGIPYSSICILTRTHS----PQEELKKVLEAYEIPVLAEIDHGF 74

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
             + AI+ +++    +    DD++ +  L SP+ N   +DI   C  + +  ++Y  ++ 
Sbjct: 75  YTNHAIQIVLSTLISLNDPNDDIALMASLCSPIGNVLYNDIAGCCINKEKNTSLYSLVKD 134

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                       ++   +L          D    I         + +         LD+F
Sbjct: 135 KP---------FMQSWQQLRQYKNE-PISDLIRHIYSHNDFYFNYTTNQDKT---NLDQF 181

Query: 533 LNFTLRNEQNSYSSL--QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           L    + E  +   L  +++I++  Q        +  + N V+I T+H +KGL+ P+V++
Sbjct: 182 LEMASQFEVQNDLDLFLEQIINDSNQDAVGEAYPYGKDANVVKIKTMHHSKGLQFPIVYI 241

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +              + + P L           + K  +      +        +E  R+
Sbjct: 242 LS-SHTTKDKYSNNPVLVDPVLGISLNALDPSLKFKRASLSHLAFVTKKNHDDLKEEMRV 300

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            YV  TRA  +L+I  + +      S+  T   +   S+        +   +S+ K +  
Sbjct: 301 FYVATTRAEKELVIVDYIDDIKSYSSSLNTSSLLEKSSYTGWLLHTYLNKPSSLFKLDKK 360

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
              +        PL++++ I      Q     +     +       L    ID   K + 
Sbjct: 361 NQLYKRP----LPLKKDDDIDTNQFYQGSISSISGHTASAAK--QSLEWPDIDLTKKLS- 413

Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                      RG + H   +++       +K    +Y  K+     A + K LL     
Sbjct: 414 ---------TTRGTLFH---EIVANCSFPYQKEDCINYAHKHNFTLQATDIKQLLS---- 457

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
            L              ++          + + I  G ID I+   ++I I ++KT     
Sbjct: 458 -LNE---CHIYKEMMQNKHEFECSYIIRENEEIYHGFIDLIAWHPEHISILDFKTDTV-- 511

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
           Q    +   + AQL  Y+K +    P+K +   +      K+  + Q
Sbjct: 512 QNETELIDKYHAQLDAYKKAIHTIEPDKKIKTYIYSFHLRKIIYLDQ 558


>gi|33865451|ref|NP_897010.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. WH 8102]
 gi|33632620|emb|CAE07432.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp.
            WH 8102]
          Length = 1186

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 104/810 (12%), Positives = 228/810 (28%), Gaps = 121/810 (14%)

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
              + F  L+      +   D  A     + Q    +++DE QDT  +QW +++       
Sbjct: 363  GTVSFAGLLT----AMDPGDAEASWLEPLQQRYRAVMVDEFQDTDPVQWRLLQR------ 412

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
               +       L  VGD KQ+IY F G +     R +          G    I  L  ++
Sbjct: 413  ---SFGGGSHLLLLVGDPKQAIYRFRGGDLDTYRRAR----------GLVSRIDTLEDNY 459

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            R+T  ++  ++ + +       L   +      RS+ +   G   L      Q       
Sbjct: 460  RTTPPLMAGLNALMAPGLPESRLEVPAVHARTARSAAVLPEGQQPLQLLQFEQDLPAGKT 519

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
              E+                    +A  +  ++             +    + +LV +  
Sbjct: 520  AIEAAVPP---------------AVAEVVMQLLIEQP--------ALSPDQLCILVSRHD 556

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                     R    +  +      +  + D  A   +  L   + +  DD     +  SP
Sbjct: 557  QAAD----LRRALAERGVPTRLVAQGDVLDSDAALMMQHLLDALAAPADDRRLRLLAASP 612

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            L  +S D +              E      +    + +     +  L  +       D  
Sbjct: 613  LVGWSADQLRC------------EAQDPQLDALAQRLRQAADQLPRLGLLGCLSGLLDAE 660

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                 + +GR   +         V +E     L     +    ++ +      PP  +  
Sbjct: 661  RTAGLSDEGR--MLGDLQQAARLVQEEMHRQGLDLAAAALWLRRQRLHPPSPLPPAREPH 718

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 + V ++TVH +KGLE P+V      +     +++              I +    
Sbjct: 719  SDLAESAVAVVTVHRSKGLEFPLVICPYLWAGAKEARYVTGPLWRDGAAGGWRIALNRDW 778

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                      + +        E  RL YV +TRA  QL++      + ++   Q   ++ 
Sbjct: 779  GLGWT-----VWQRSHAEQVAEAERLAYVAVTRARSQLLLLWAR-CAPQQSVLQHWLFEG 832

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
              D+  +     +        +     +   T     TP   + +  +      I     
Sbjct: 833  DADTLRDLPLSHRPLKPEVGQQRWRPPHRQETLAIGATPQRIDRSWGRSSYSAWIAAPAA 892

Query: 745  SPIKNDIN--EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
              +       +P     +    +   +   L    +    G  +H++L+ +         
Sbjct: 893  EALLEQGRDQDPEAEEVTAAGLEEWPDRGPLADFPRGAAAGDCLHRMLEQLPFQCSGDWG 952

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--------CDSYSEVSVSGK 854
            + I     ++         + +   + ++L+ P+     +             E+S    
Sbjct: 953  HVIEQELQRSG--LSLDWREAVEQGLQQVLDTPLGGPLAALPLSALTPDRRLHELSFDLP 1010

Query: 855  INCPKKD------------------------------IIISGRIDQISISQ-----QNIF 879
            +   + D                                ++G ID +            +
Sbjct: 1011 VRHARTDDLVEAFRLDPEARFGRDYIDQLSSLQVNSRGFLTGSIDLVFSDAADPLQARWW 1070

Query: 880  IFEYKTH----HHVPQEIEHIPYTHIAQLS 905
            + ++K++       P         H  Q++
Sbjct: 1071 VADWKSNWIGERGEPGSPSCCGPRHYDQVA 1100


>gi|237738470|ref|ZP_04568951.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC
           9817]
 gi|229420350|gb|EEO35397.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC
           9817]
          Length = 1017

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 146/910 (16%), Positives = 296/910 (32%), Gaps = 163/910 (17%)

Query: 20  LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             P+   Q   + +   +    G P      +  +    ++   E      + FL  KF 
Sbjct: 205 ALPILEKQEEILKEIAGI---KGKPFDDLVKKDYRGYFSSKDKGEYLKENYNIFLKDKF- 260

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKSTLASLTLAKYLNA 135
                   ++  K  D+  +L+     +++ +D          +       L   + +  
Sbjct: 261 ----WSGVKVKSKKGDIDSQLEDLNYLYVEFKDNLGREMYNRLVIPYEEKLLQTIEKIYT 316

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVS--------AWIRYKIDQEINHILIDEVQD 187
            Y+E K +       D+   T   L+++++               ID  +  + IDE QD
Sbjct: 317 IYDEIKFREKRFTHTDINNYTFKYLEEKELGFIDENGLTEEFFEIIDGRLRSVFIDEFQD 376

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS++QW +++++ +              +  VGDEKQSIY + G E K      +I    
Sbjct: 377 TSILQWRILKNILD----------KSENIICVGDEKQSIYGWRGGEKKLFENLAQII--- 423

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                      EL   FRS  +I+   ++VF                      R     +
Sbjct: 424 ------DGEEEELDTCFRSKKNIVEYTNEVF----------------------RDIADKS 455

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V ++        +    ++   + +   L +E     L   I   I             K
Sbjct: 456 VDVYPPNCDWKFNSVGYRESEESGFIKLLTEEEERETLEVMI-DEIE------------K 502

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                   I +L R +K    I F       +  I         + +   I  + AL  +
Sbjct: 503 NFSTNYSGIGILARTKKTLERIAFSL----GERGIPYTLESDTSIIESRGIGGIYALISW 558

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
           ++ ++D LS +  L+S L N S   + +I  +R E E+                + +   
Sbjct: 559 LV-KKDFLSLLDFLRSDLVNISAPTLKEIIKKRDEVESYLYSDGSIDIE-----EDIFST 612

Query: 488 IHE-LIHIAQFCSPHDFFT-LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           + +  I+    C   +F T  +L       +F +    E    +  F             
Sbjct: 613 LKDIYINYTNHCGETEFLTYEMLLRIGIGNRFQND---EDTLNIFGFYKLLKEY------ 663

Query: 546 SLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             +     L +Y    ++       + + N + +MT+H +KGLE   +F     S+  + 
Sbjct: 664 --RYFNDFLIEYEENNQKEKFKKISAGSSNTISLMTIHKSKGLEFDTLFY-FIPSKPRNS 720

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL-----IKHLKKSTQEEYNRLLYVGM 655
                        +   +  ++      NNI+  +     ++  +   + E    LYV +
Sbjct: 721 GDKGMEFYFEMDKNYSQVKSYLITDNKFNNILESVEEIDYLEEKRLKWEHEEINNLYVAL 780

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TR  + + +         +      +  ++ +    +  + K++  +++   E+      
Sbjct: 781 TRPKNNIFVV----VEKIEDIENSNFATLLKNRDRGEVILNKVEKEDNLKGIEYDMKL-- 834

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                +TP+   ++ K+    + I K     ++ +                         
Sbjct: 835 -----STPIVAHKSDKEENQREGINKIYSHTLQIEGKRV--------------------- 868

Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLE 833
                 RG+IIH  L+ I    E + +        K   +   KE   LL   +I  +  
Sbjct: 869 ------RGIIIHYFLENILHWEEKEIELSKKLTYAKYISVVGEKEMNELLSKENIDYIY- 921

Query: 834 NPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRIDQISI------SQQNIFIFEYK 884
                          Y E     KI+   ++     RID++ I       +  I+I +YK
Sbjct: 922 -ERCRNIFDTHWDFIYREYPTYLKIDGENRNF----RIDRLMIKLPTEKEKGIIYIADYK 976

Query: 885 THHHVPQEIE 894
           T  +  +++E
Sbjct: 977 TGKYDEEQLE 986


>gi|262198052|ref|YP_003269261.1| exodeoxyribonuclease V [Haliangium ochraceum DSM 14365]
 gi|262081399|gb|ACY17368.1| Exodeoxyribonuclease V [Haliangium ochraceum DSM 14365]
          Length = 1284

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 125/1019 (12%), Positives = 272/1019 (26%), Gaps = 181/1019 (17%)

Query: 23   LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
            L   + + +    + ++      + +        +        F       +T     + 
Sbjct: 253  LAAIKRAGVRGQSARAVYRRLALLRELLDGFAVHADIADFLVAFEAADGA-VTSSGKERL 311

Query: 83   NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
                    + +    + L  ++D  + +           +       +  + A  E  K 
Sbjct: 312  LDYVAGHLESADIDDDALAAARDVVLDLAGVIVPLSAAVAQ----RFSPSVVARLESDKN 367

Query: 143  KNCVLDFEDLIINTNDLLK---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            +    DF+D++    + L     + +   +R ++ +   + LIDE QDT  +QW++   L
Sbjct: 368  RYGQFDFQDMLRLVWESLDMDASQAIEDSLRARLRERYRYALIDEFQDTDELQWKIFGQL 427

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                  G +       L  +GD KQ+IYSF GA+    L  +   Q+R         I  
Sbjct: 428  Y---LGGPDEPPPDNRLCIIGDPKQAIYSFRGADVYTYLEARERVQER------GGQITN 478

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L  ++RST  ++   + VF+    +  +  D         +  G  G             
Sbjct: 479  LVDNYRSTDALVRAYNTVFASRYFSGEIRYDHPVRAATDLTACGPDGR------------ 526

Query: 320  SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT----IFSNGKKRVIQAKD 375
            +    +          L  E     L  RIA  +  ++G       +      R ++A D
Sbjct: 527  AITPIRLLHVKPEQGKLRAEILRQALLERIAAELGLLLGDPAHAIAVGPPDAPRPVRAGD 586

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            + VL R  +++  +    R       I      +  L      +++  +   I       
Sbjct: 587  VFVLTRTTRESNEVADRLR----QAGIPCAIYKQEGLLQTREAREVRDVLCGIAEPRRRS 642

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
            +      +  F  +  D+  +                     + +    +  ++E   +A
Sbjct: 643  ARFQAWTTRFFGATLSDLPYL-------------------ADLPETHPFLARLYEWKALA 683

Query: 496  QFCSPHDFFTLILGAKKG-RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            +       FT ILG      ++         +                S   L ELI+ L
Sbjct: 684  ERLEYETLFTSILGDSGIIERELFLESSERALTNFLHIFELLREEVVRSRCDLHELIARL 743

Query: 555  E----------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK--- 601
            E          Q      +   +    V++MT+H +KGLE+ +VFL    S +   +   
Sbjct: 744  ERWIVDTAEGTQADERNIQRMESEEAAVQVMTIHRSKGLEAKIVFLYGGFSAMPGDEVQV 803

Query: 602  -HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV------- 653
             H     ++              + +S +         + ++       L YV       
Sbjct: 804  YHEGSERLVHVGGAARRDVAEAVRRESESESQRLYYVAITRAVAR--LYLPYVDPDDYRV 861

Query: 654  --GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK------IKLTNSIN 705
                 + + +L          + + +       +         V         +    + 
Sbjct: 862  SGAYGQVNRRLEDIVQRLRKGDDELSALFSLQRIATGTPPAPPVPLPRVLQTWRPPAKLL 921

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN---------------- 749
            +    A +++                    E  +  +L +                    
Sbjct: 922  EPAPAALDYALARERRAGFVVTSYSAMKNAEPALYAELANADARRVLAQGDAVANDTADA 981

Query: 750  --------------------DINEPYILNPST---------IDTKGKTNLESLLSDNQTF 780
                                    P  +  S           D        +        
Sbjct: 982  DADADTDSDSASAASDSTAASAQAPAPMLFSDQSSGIGDAGADESATGVRAAEDELPGGP 1041

Query: 781  NRGLIIHKLLQVIFTLPEH---------KRKNFITSYCTKNAKLWPAKEYKNLLLSIT-R 830
              G+ +H +L+ +               +R    + +     +      +      +  +
Sbjct: 1042 QSGVFLHSVLEHLPFASLAEADGFDDWCERPEVASVFADLMLRHGRDPAHLRYSQRVVYQ 1101

Query: 831  LLENP-----MMTTAMSCDS--YSEVSVSGKI---------------------------N 856
             L  P      +   ++  S    E+     I                            
Sbjct: 1102 CLSTPLRVGRKIVPNLASCSENLRELEFVYPIPQLAPRSSDSAAAAAAQASASATTGRDP 1161

Query: 857  CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT----HIAQLSIYEKIL 911
               +   I G ID +   Q   ++ ++K+          +       +  Q  +Y   L
Sbjct: 1162 VRVERGYIKGIIDLVFQFQGRAYLIDWKSDILASYSNRAVARRVYSTYRLQAQLYALAL 1220


>gi|239500826|ref|ZP_04660136.1| ATP-dependent DNA helicase pcrA [Acinetobacter baumannii AB900]
          Length = 649

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 107/666 (16%), Positives = 214/666 (32%), Gaps = 143/666 (21%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 55  AASEIVARVEQHVGAQAKGLRASTFHTFCMYLLRRN-----PQAFGLTQFSIIDRDDQLL 109

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +        K        
Sbjct: 110 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQSKLSEAL-----LKQLPEAYEY 157

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-WIRYKIDQEINHILIDEV 185
            +    L   YE+ K++   LD++D++      L+  +    W+          +L+DE+
Sbjct: 158 KSQIAELMKTYEQRKRERNFLDYDDILSIVAVHLQNSEALTNWVAGFCQA----LLVDEM 213

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 214 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 262

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I  L L++RST +IL + + + S                +   +  G+ 
Sbjct: 263 --------DAVIHTLDLNYRSTQEILDLSNWLLSHSP---------IDYQKQLQAHRGKG 305

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              QL        +                          A  IA  +            
Sbjct: 306 QKPQLHLFGNEFEE--------------------------ANWIAQDLIERHQQG----- 334

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D +VLVR       +       +    I         L +   +KD+++L 
Sbjct: 335 -----ANWYDHMVLVRSGYSARYLEGAFIAAE----IPYRFIGGVKLLESAHVKDVLSLL 385

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV- 484
           R + + +DDL+++  L +      +    K+  +      V E  Q+    G    Q + 
Sbjct: 386 RIVSNPQDDLAWMRFL-TLWDGIGDVGASKLAQELMSISEVEERCQRLERHGKVPLQAIL 444

Query: 485 ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
               +  + + +  +   +       +       Q + ++  +      D       ++ 
Sbjct: 445 ILKQLDVLQQHVEASIGLALDALSEQL------EQNYKTKDWSRRARDFDLVKQLARKH- 497

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL E + E    P +I +   + + + V ++T+H+AKG E  V ++         
Sbjct: 498 ----ASLGEFLEEYVLEPISISEIEKAGDDDLVTLITIHSAKGAEQKVCYVP-------- 545

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                         N              EE  R+LYV +TRA 
Sbjct: 546 --------------------------HVSPNQYPYARAQGDFDEVEEERRVLYVALTRAE 579

Query: 660 DQLIIC 665
           ++LI+ 
Sbjct: 580 NELILT 585


>gi|187479029|ref|YP_787053.1| DNA helicase [Bordetella avium 197N]
 gi|115423615|emb|CAJ50155.1| DNA helicase [Bordetella avium 197N]
          Length = 685

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 93/720 (12%), Positives = 202/720 (28%), Gaps = 127/720 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R    ++     + + +  L     S    +       G   +   A  +  +      
Sbjct: 73  RRAAQEMDRRAGGVLRRVMQLGAAAPS--LPWAGTFHSVGARLLRDCATRIGLSESFTVH 130

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           +   +      L  +           +      +  ++  SQ+   ++  RF  +     
Sbjct: 131 DRGDAEDLMGLLRHELALTATQNRFPLKGTCLSIYSRVINSQEPLGEVLTRFFPWCAQWE 190

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                   K L   Y +AK++  +LD++DL++   +++    ++  +        +++L+
Sbjct: 191 AE-----LKRLFQAYMQAKQEQHILDYDDLLLYWAEMMSDPGIARDV----SARFDYVLV 241

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QDT+ +Q  ++ ++              + L  VGD+ QSIY+F  A  + +L    
Sbjct: 242 DEYQDTNRLQASILLAM----------KPGGQGLTVVGDDAQSIYAFRAATVRNILDFPA 291

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                         +I L  ++RST  +L   + + +        +  +      +    
Sbjct: 292 QFG---------AHVITLERNYRSTQPVLDASNAMIAQATERYAKALWTDRAATQKP--- 339

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                                            L   S     AR +A  +         
Sbjct: 340 --------------------------------ELVNVSDEVGQARWVADQVLARREEGES 367

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                      K    L R    +  +            I  V        +   +KDL+
Sbjct: 368 L----------KSQAALFRTASHSAALELEL----TRRNIPFVKFGGLRFLEAAHVKDLL 413

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
           ++ R+  +    ++   +++  L         K+     E       +         +++
Sbjct: 414 SVLRWAENPRSRMAGFRVVQ-LLGGIGPVTAGKLMDLMAEAAD--PQVCLANFRTGPQWE 470

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            + +    L              L L       +            LD+          +
Sbjct: 471 GLAQMFSALRSEQAGWPAD--IDLALNWYAPLLEQRYDDAPVRRADLDQLARLA-----S 523

Query: 543 SYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            Y + +  ++EL   PP+     S     + + + + T+H+AKG E   V++++      
Sbjct: 524 GYPTRERFLTELTLDPPSATSDESGKPLLDEDYMILSTIHSAKGQEWKSVYILNAVDGCI 583

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                         EE  RLLYV MTRA
Sbjct: 584 PSDMATG----------------------------------NAEEIEEERRLLYVAMTRA 609

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            ++L I         ++S     +     +    E +  +           +        
Sbjct: 610 RERLQIVVPQRFYVHQQSGMGDRHVYASRTRFLPEAMMPLFEHLPKLPASPLGRAAPGAA 669


>gi|262375019|ref|ZP_06068253.1| ATP-dependent DNA helicase PcrA [Acinetobacter lwoffii SH145]
 gi|262310032|gb|EEY91161.1| ATP-dependent DNA helicase PcrA [Acinetobacter lwoffii SH145]
          Length = 662

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 97/604 (16%), Positives = 194/604 (32%), Gaps = 120/604 (19%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           +R   L  F L +    +KN       ++  DL    + ++ +     +     K     
Sbjct: 113 DRDDQLMMFRLIRGRDDKKNPNHLPKPQELCDLYSFARNTRQKLSLALE-----KQMPEY 167

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
           LA       +   YE  K+    LD++D++      L + +        I     H+L+D
Sbjct: 168 LALKDQIAEIMKEYEARKQARSFLDYDDILAVVATALAQSEGLVDYVASIC---RHMLVD 224

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E+QDT+ +QW ++  L +             +LF VGD+ QSIY F GA+ + +   K  
Sbjct: 225 EMQDTNPLQWALLEPLKDRI-----------SLFCVGDDAQSIYGFRGADFENIHHFKER 273

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        I +L  ++RST +IL + + +    E       ++      +     
Sbjct: 274 VP--------DAQIFKLEKNYRSTQEILDLSNWLLDQSEIKYDKRLEAYRGEGIKPRMHI 325

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                                                     A+ IA  I          
Sbjct: 326 FPNEFD-----------------------------------EAKWIAIDIKERH------ 344

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                +  +  + +VLVR       I            +         L +   +KDL++
Sbjct: 345 ---YLQGSKWGEHMVLVRSSFAARHIE----AACIAANVPYRFIGGMKLLETAHVKDLLS 397

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           + R + +  DD++++  L         + +  +   +   + + E   +     + KF  
Sbjct: 398 MLRVVANPLDDIAWMRFLTL------WNGVGDVGASKLSQQLLAEPEMEAIADNLEKFGK 451

Query: 484 V-IKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           + ++ I  +  ++          +L + A + +     +          E +        
Sbjct: 452 IPLETILIMQQMSVLKGEVQACVSLAIQAIESQLAENYKKDWPRRQSDFELVKQLASKHS 511

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                L+E + +             ++H+ V ++T+H+AKG E  V ++ +     + H 
Sbjct: 512 QLSEFLEEYVLDPVSISE---IERQSDHDVVTLITIHSAKGTEQNVCYVANVTPGNYPH- 567

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                      EE  R+LYV +TRA ++
Sbjct: 568 ---------------------------------ARAQGDFDDVEEERRVLYVALTRAKNE 594

Query: 662 LIIC 665
           LI+ 
Sbjct: 595 LILT 598


>gi|124026183|ref|YP_001015299.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. NATL1A]
 gi|123961251|gb|ABM76034.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
            NATL1A]
          Length = 1261

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 144/1064 (13%), Positives = 302/1064 (28%), Gaps = 216/1064 (20%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
            LW     ++ D  + ++  + +      K          ++  + R+ LLS++    K  
Sbjct: 241  LWEEKGQELEDSFREIAKDLRSQGIKDTKP-------YSSKPRKNRYELLSNWIEKYKEK 293

Query: 80   PQKN-------------IITQEINK-KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             + +                + I +       +   K  +  + I               
Sbjct: 294  KRPSYEDIQNQNLINEYFHPKNIYQLDMKHKIDSCSKEMEPILDIIGDLYDSPGEFVWEH 353

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINT------NDLLKKRDVSAWIRYKIDQEINH 179
            +L   K      E+ K K  ++++ DL+          + +K       I   ++Q    
Sbjct: 354  ALLWTKR---ELEKRKSKKGLINYSDLLKLLDPKNQNRNAIKDEVNHNNIYKNLEQRYKV 410

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
             LIDE QDT  +Q  +++    +             L  +GD KQ+IYSF G      ++
Sbjct: 411  ALIDEFQDTDPVQLRLLKKAFGNRSS--------HLLLMIGDPKQAIYSFRGGSLNTYMK 462

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +               I  +  ++RST  ++  ++K+F        LS         + 
Sbjct: 463  AR----------EACDQIHLMNANYRSTKSLILTLNKLFLDGLIRSNLSTQELNPCS-QE 511

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
              +   G  + ++ +     +Q    Q         +  +         I   +  ++  
Sbjct: 512  DLLELNGIKEPFKVLNLIVTNQKEKAQRIKLDSKSKIEDKIPKV-----IGSYLLELLSN 566

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                     + +   DI +LV +      I        +  +I         +      +
Sbjct: 567  -------NPKDLNPSDICILVNRHDQAKNIHSYL----SKIRIPSQLLSNENIFTREGAQ 615

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
             L      I+S  +      +  S L  + ++ + K      + +++     + +     
Sbjct: 616  ILQIFINCIVSPHNQQKLALLACSELMQWKKEKLIK-SKIDGDFDSLSSKFYELS----- 669

Query: 480  KFQHVIKYIHELIHIAQFCSPHDFFTL--ILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            K    I  +  L +  +  S  D      +LG      Q +    +          N   
Sbjct: 670  KLFPTIGLLGCLSNFLEGKSIADLSNRGTLLGDLYQSSQLVDEQIHRQK------FNALR 723

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             ++  S    Q     +EQ P   +   + +++ V I+T+H +KGL+  +V       + 
Sbjct: 724  ASQWLSSKRFQS----IEQIPEEYQPNSAISNSSVNIITIHKSKGLQFKIVICPYLWQKP 779

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
               K                  + I +    N   S     ++K +  E  RL YV  TR
Sbjct: 780  PDRKSHLW---------KDNQNLLISKKYKWNKKYSSYQDFIRKESLNEAERLAYVAFTR 830

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI--------KLTNSINKDEW 709
            A  QLI+   +    E        +     +   ++  K++        +L   I   + 
Sbjct: 831  AKKQLIVLWANAAGQEGNPLSGFLFGSESINLKIEDHTKEMMENSFTKRELNVDIQDVKI 890

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
            I    +   P++        I     E    +  FS      N+  IL   + +      
Sbjct: 891  IETNTTWSQPKSEVKLSLGAIPTHQFENSWGRYSFSKWITHKNDELILKDLSDELNEDHE 950

Query: 770  LESLLSD----------------------------------NQTFNRGLIIHKLLQVIFT 795
             +  + D                                   +    G  +HK+L+ I  
Sbjct: 951  FKGEIEDISFQEIDHLLVEKDKSIDRSEDQTWSKESPIGEFPKGPIAGTCLHKILERIDF 1010

Query: 796  LPEH---KRKNFITSYCTKNAKLWPA-KEYKNLLLSITRL-------------------- 831
                   K    I              K    LL  I  +                    
Sbjct: 1011 NDIENQLKISTIIEEELNIVNISNSFIKPINILLKRIANIPLGGPLGKFKMKNLNTKSSI 1070

Query: 832  ---------------LENPMMTTAMSCDSYSEV---SVSGKINCPKK-DIIISGRIDQIS 872
                           +    +++    D  ++     ++  I+        ++G IDQ+ 
Sbjct: 1071 KELKFDIPICHEANPINTLELSSIFKEDVQNKYGSDYINKLIDLKINSSGFLTGSIDQVF 1130

Query: 873  ISQ-----QNIFIFEYKTHHHVPQ-------------------EIEHIPYTHIAQLSIYE 908
                       ++ ++K++                        + E   + +  Q  IY 
Sbjct: 1131 ADNPNHEIAKWWVLDWKSNWIGSSLSKEHRSTCGPSNYSISRMDEEMYHHHYPLQAHIYL 1190

Query: 909  KILKDSY--------PNKSLVCLLI-YVSEPKVFIIPQ-NKLNK 942
              L            P K L   +  ++       +P   +L +
Sbjct: 1191 LALHRFLNWRLPDYSPQKHLGGYIYVFLRG-----LPDKEELEE 1229


>gi|51598887|ref|YP_073075.1| exodeoxyribonuclease V, beta chain [Borrelia garinii PBi]
 gi|51573458|gb|AAU07483.1| exodeoxyribonuclease V, beta chain [Borrelia garinii PBi]
          Length = 1168

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 135/849 (15%), Positives = 266/849 (31%), Gaps = 108/849 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    ++  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELKKIIKSTNTIDQNYIISNLKNYLKSED--QKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SL+Q E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLMQIEIFKIL----------KTAEIKLIFIADPKQIIYSFRKADIAF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               N  +  + I L  + RS+  ++  ++++F+        +   +  I           
Sbjct: 416  EIKNKIKTDARIVLKTNHRSSKKLIEPLNRIFNNI-----YNNAISDEIEKIEFTNSLPN 470

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                   +++  + +                   +   + ++ A TI  ++   TI  N 
Sbjct: 471  QKNDNNILINGQEIEGINII---------TTTTENEEDIYQKTALTIKYLLTHGTIVENN 521

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            K R I+ +DI VL R + +  LI    +  +           +  +       ++  + +
Sbjct: 522  KIRNIEMQDIKVLCRGKNEINLIDKALQKEQIRTN-----KTQEKVLKTKEFNEIFYILK 576

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQHV 484
             +  ++   +   +L S + N   D    +  Q      E   E I            + 
Sbjct: 577  CLDRKQSFKNLNYILNSKILNVPWDLQKILIKQEKIQLIEEFIENITVLLEKNEITLINA 636

Query: 485  IKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR-- 538
            I  I    +  I IA                  +   I     E +   +  L    R  
Sbjct: 637  INKITLEKNLWIKIANSTKDPKIIEWAKNKINYKGLLIKESKLENLKNYETALEIISRIY 696

Query: 539  NEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             ++ +  SL   +  L     + +        + ++  + ++T+H +KGL   +VFL++T
Sbjct: 697  YKEQNIQSLISSLESLIINEESEEIEEKANNINNDNESIELITIHKSKGLSMNIVFLINT 756

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                 S+   KK H      +      +          + +  K+ +     E   + YV
Sbjct: 757  SPVENSNIFSKKNHFYKFYKNGNIEYDFFK--------LEENKKYARLKILSEEKNIFYV 808

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            G TRA   L I K ++ +++     +++   + D  H+    + I       K       
Sbjct: 809  GATRAKFALFITKTNSITSKLLEIAKSFT--IDDINHDFNIYQFISQKRLNKKKNNANVN 866

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                 P+       +                +    + +          D   +T LE  
Sbjct: 867  MELIPPKPIIKNMFKKEYTSSFSSLTAHAHHTTFYENYDFKNTNYEKETDLDYETTLEET 926

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYK-NL 824
            L   +  + G I+H  ++ I                   I     K        E + + 
Sbjct: 927  L--PKGKDSGNILHAAMEEIVFSTAKDTFDNFKQINIEIIKKQIQKINSNLNTIEIQNSF 984

Query: 825  LLSITRLLE------NPMMTTAMSCDSYSEVSVSG------------------KINCPKK 860
               I  +L       N  +      +   E+                       ++    
Sbjct: 985  TKMIYNILTYNIRAINTRLCDI--EELQKEMEFLIKINSKVQKQKYLFENHFEDLHIKLS 1042

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKIL 911
            D  + G +D I  +   I+I +YKT++    + ++             +  Q  IY   +
Sbjct: 1043 DGYLKGIVDLIFKANNKIYILDYKTNYLGKDKNDYNITNLENIIKKEYYDLQYKIYALGI 1102

Query: 912  KDS-YPNKS 919
            K   + NK 
Sbjct: 1103 KKILFKNKR 1111


>gi|255660244|ref|ZP_05405653.1| UvrD/REP helicase [Mycoplasma genitalium G37]
          Length = 637

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 103/632 (16%), Positives = 188/632 (29%), Gaps = 113/632 (17%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
             QTL++          F               K II         D +       +  I
Sbjct: 90  LIQTLKKRFIIDDDISYFLKEFLADSKLDINLAKQIID-NFKNTFADFEINKLDQDERLI 148

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            + +     K  + +     L     + YE+ K  N  LDF DL+I T +LL   +    
Sbjct: 149 SLCEHSLLNKDEEYSTLKTQLINAFIS-YEKNKILNNKLDFHDLLIKTCNLLSNDND--- 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +  +  ++  HIL+DE QDT+ IQ+E+I+ L           +  + LF VGD  Q IY 
Sbjct: 205 LLNQWSEQFQHILVDEFQDTNQIQYELIKMLV----------TKNKNLFLVGDNNQMIYR 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA    +   K            K +   +  ++R   +IL V +++       +   
Sbjct: 255 WRGAVNGIITALKHDF------NVPKSNEFFINQNYRCDQNILAVANQILLKIMAYEKQV 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
           +     +    +   +                                 Q  S    A  
Sbjct: 309 KTEKNLLFSTLNSDKKPVYF-----------------------------QAESVENQANW 339

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I  +          +   I  KD+ +L RK +D   +  L      D  I      
Sbjct: 340 IFNKIKAL---------NQTEKINFKDMAILFRKNRDITTMVELIEA---DGTIP--LPK 385

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
           +    + L    L  +   I ++ +      +    +++    +++K           + 
Sbjct: 386 QKSYFNQL--VKLQRVLIAISTRTNLDIKRALQALKIWSNDLKELWK--QSDKTNLFDFL 441

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
              +      S       Y + LI +A+    +  FT +    K          ++ I+ 
Sbjct: 442 KWSELNQKNHSSKLKATGYFNLLIKLAEDQQINLLFTELFKKLKV---------DQTIEN 492

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           L          +++   +   L   +             + + + ++TVH AKGLE   V
Sbjct: 493 L--LWKKLTEFQKD--KTEFSLSEFITSLALEFDSIIENSSDTINLLTVHAAKGLEFEAV 548

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F+       F                                 +        +    +  
Sbjct: 549 FIYGMNQGDFP--------------------------------LFLSQNQNDEQHLIDEL 576

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
           +L YV +TRA   L I      +N        
Sbjct: 577 KLFYVAITRAKRFLFITAVLQINNNSIKPSSF 608


>gi|12045098|ref|NP_072909.1| UvrD/REP helicase [Mycoplasma genitalium G37]
 gi|1723131|sp|P47486|UVRD_MYCGE RecName: Full=Probable DNA helicase II homolog
 gi|1045935|gb|AAC71464.1| UvrD/REP helicase [Mycoplasma genitalium G37]
 gi|166079083|gb|ABY79701.1| UvrD/REP helicase [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 703

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 103/632 (16%), Positives = 188/632 (29%), Gaps = 113/632 (17%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
             QTL++          F               K II         D +       +  I
Sbjct: 90  LIQTLKKRFIIDDDISYFLKEFLADSKLDINLAKQIID-NFKNTFADFEINKLDQDERLI 148

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            + +     K  + +     L     + YE+ K  N  LDF DL+I T +LL   +    
Sbjct: 149 SLCEHSLLNKDEEYSTLKTQLINAFIS-YEKNKILNNKLDFHDLLIKTCNLLSNDND--- 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +  +  ++  HIL+DE QDT+ IQ+E+I+ L           +  + LF VGD  Q IY 
Sbjct: 205 LLNQWSEQFQHILVDEFQDTNQIQYELIKMLV----------TKNKNLFLVGDNNQMIYR 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA    +   K            K +   +  ++R   +IL V +++       +   
Sbjct: 255 WRGAVNGIITALKHDF------NVPKSNEFFINQNYRCDQNILAVANQILLKIMAYEKQV 308

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
           +     +    +   +                                 Q  S    A  
Sbjct: 309 KTEKNLLFSTLNSDKKPVYF-----------------------------QAESVENQANW 339

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I  +          +   I  KD+ +L RK +D   +  L      D  I      
Sbjct: 340 IFNKIKAL---------NQTEKINFKDMAILFRKNRDITTMVELIEA---DGTIP--LPK 385

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
           +    + L    L  +   I ++ +      +    +++    +++K           + 
Sbjct: 386 QKSYFNQL--VKLQRVLIAISTRTNLDIKRALQALKIWSNDLKELWK--QSDKTNLFDFL 441

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
              +      S       Y + LI +A+    +  FT +    K          ++ I+ 
Sbjct: 442 KWSELNQKNHSSKLKATGYFNLLIKLAEDQQINLLFTELFKKLKV---------DQTIEN 492

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           L          +++   +   L   +             + + + ++TVH AKGLE   V
Sbjct: 493 L--LWKKLTEFQKD--KTEFSLSEFITSLALEFDSIIENSSDTINLLTVHAAKGLEFEAV 548

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F+       F                                 +        +    +  
Sbjct: 549 FIYGMNQGDFP--------------------------------LFLSQNQNDEQHLIDEL 576

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
           +L YV +TRA   L I      +N        
Sbjct: 577 KLFYVAITRAKRFLFITAVLQINNNSIKPSSF 608


>gi|153951004|ref|YP_001398295.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938450|gb|ABS43191.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 676

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 105/625 (16%), Positives = 201/625 (32%), Gaps = 180/625 (28%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   LDF DL+IN  DLLK+             E + IL+DE QD
Sbjct: 168 EIYEDILKEYDNEKKRFNYLDFNDLLINLKDLLKEE----------KYEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNTLQSSLIEAFHS------------KSLFCVGDYDQSIYAFNGADINIIGGFKDRF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----KDAKIFSLNKNYRSSRSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V+++D    P   ++   FD                  I+ MI          
Sbjct: 298 ----ELIVTRNDEFKAPSLLAFEELFDQ--------------YQNIAKMI---------L 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       +    R       I+ V        + L +K   A+   
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGVEVALRE----QGIASVRKGSGSFFESLEVKAFSAMLAL 386

Query: 428 ILSQEDDLSFVCM--------------LKSPLFNFSEDDIFK------------ICTQRH 461
           I++ +D ++F+ +              +   L      ++ K               +R+
Sbjct: 387 IVNPKDIMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKSVNLQNHQKRN 446

Query: 462 ETETVYEYIQKFANCGISKF-------------------QHVIKYIHELIHIAQFCSPHD 502
               ++  +++ A     KF                      ++ I+  +  A       
Sbjct: 447 YQLGLFADLEELARETRFKFESEFDAHPILRLSKINDLCAKNLEKIYLYLKKAMEIKHSL 506

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ---------------NSYSSL 547
               ++      ++       +        ++   ++E                 +YS +
Sbjct: 507 ALVNLICENSFYREICEELAIKRATNKAGQVDLLRKSENLEKIEIKFNVLKELTKNYSDI 566

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + L      +     ++   V +++VH +KGLE  +VF++D     F ++ +  M 
Sbjct: 567 YKYYNFLTLGASEM-----SSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMG 621

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                              + EE  RL YV +TRA + L +   
Sbjct: 622 G----------------------------------SLEEERRLFYVAVTRAKNILYLSYA 647

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHND 692
               N+K S   + + +       D
Sbjct: 648 KYDKNKKTSFAPSRFLIEAGLCKGD 672


>gi|218674130|ref|ZP_03523799.1| ATP-dependent DNA helicase protein [Rhizobium etli GR56]
          Length = 564

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 158/483 (32%), Gaps = 82/483 (16%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A     + L A Y EAK+   VLD++DL++    ++ +  ++  I        +H+L+D
Sbjct: 60  AAWEKQLRELFACYVEAKQSQNVLDYDDLLLYWAQMVGESVIAEDI----GSRFDHVLVD 115

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ +Q  ++ +L              R L  VGD+ QSIYSF  A  + +L     
Sbjct: 116 EYQDTNRLQASILMAL----------KPGGRGLTVVGDDAQSIYSFRAATVRNILDFPAA 165

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       +I+ L  ++RST  ILT  + V  +       +               
Sbjct: 166 FS-------PPANIVTLDRNYRSTQPILTAANAVIDLASERFTKN--------------- 203

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 LW +  S    +    ++               +  AR +A  + +        
Sbjct: 204 ------LWTERQSAERPRLVTVRD--------------EAEQARYVADKVLDNREEG--- 240

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                  ++ K   VL R    +  +            I  V        D   +KD++A
Sbjct: 241 -------LKLKQQAVLFRASHHSGPLEVEL----TRRNIPFVKFGGLKFLDSAHVKDMLA 289

Query: 424 LGRFILSQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             RF  +  D ++   +++  P    S             +                 + 
Sbjct: 290 ALRFAQNPRDRVAGFRLMQILPGVGPSTAQKALDLMAEDASPLTALAAMPAPPRCGEDWA 349

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             +  + E+               I  A++     + R   +      + L         
Sbjct: 350 AFVSMLQEMKSGKAGWP-----AEIELARQWYAPHLERLHEDAAARQADLLQL--EQIAG 402

Query: 543 SYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            Y+S +  ++EL   PP      +     + + + + T+H+AKG E   VF+++      
Sbjct: 403 GYASRERFLTELTLDPPDATSDQAGVPLLDEDYLILSTIHSAKGQEWTKVFMLNVVDGCI 462

Query: 599 SHK 601
              
Sbjct: 463 PSD 465


>gi|294782363|ref|ZP_06747689.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 1_1_41FAA]
 gi|294481004|gb|EFG28779.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 1_1_41FAA]
          Length = 1046

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 145/937 (15%), Positives = 293/937 (31%), Gaps = 154/937 (16%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL---KKAQTLQQASQTQCIE 63
            LSLN+S E I K+   +    V  + +  S  +E      L    K        +T   +
Sbjct: 226  LSLNDSKEYIKKEKLSIDEKPVEILRELFSY-LENDAKKDLYDVLKKDCTDYIGKTIEAQ 284

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKK-SPDLKEKLKKSQDEFIK-IRDRFNTYKMFK 121
             +    +  F  QK T        ++ K+   + KE +   Q+   + +        +  
Sbjct: 285  RKLLFKNFNFFFQKGTAGLIYNGNKLKKESDREHKEYIISRQEVLKENLAKEVYNEVLIP 344

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN--------DLLKKRDVSAWIRYKI 173
                   L+  +   Y+  K ++    F D+ I T          L+ +  ++      +
Sbjct: 345  YEEKIFELSLEIFRLYDMFKVRDKNFTFNDIAIYTYMAIFNKENGLIDENGLTDVFFESL 404

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            D  I  I IDE QDTS++QW+++   T+            + +  VGD+KQSIY +   E
Sbjct: 405  DMNIETIFIDEFQDTSILQWKILYEFTK----------KAKIVVCVGDDKQSIYGWRDGE 454

Query: 234  PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
             +     K I                L  S+RS  +I++  +++FS              
Sbjct: 455  KRLFENLKTIL---------NAQKDPLKKSYRSDINIVSYCNELFSTISKK--------- 496

Query: 294  TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                             W    S+ +S+     ++             + +L        
Sbjct: 497  ---------------DNWPFNPSEINSKNQGYIKAICMSDQGEEDNIYSVLLEEL----- 536

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                          +      ++ ++ R   +   I  L         I  + N+   ++
Sbjct: 537  --------------QHFAPYDNVAIIARTNNELNEIAQLLESE----GIPYILNNDKDIS 578

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
            ++  I +   L ++++    +L+    + SPL N   +DI  +   +++  +   + Q  
Sbjct: 579  EYPGIFECFELLKYLIYGY-ELALFNFISSPLSNIGTEDIEVLLKNKNDVLSYINFSQDN 637

Query: 474  ANCG---ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                     K  + +  I ++    +     +    I+   +    F+     +    + 
Sbjct: 638  EFINSLENKKIINFLNKIIDIKKNFKSFKVQNLIYEIIKKFQFLDYFVEFNEVK---NIY 694

Query: 531  EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            +F   +         S+ EL+++  +    I     +N   V ++T+H +KGLE    F+
Sbjct: 695  DFYLLSNSY-----HSVIELLNDYNENKL-ILSDIKSNKKGVELVTIHKSKGLEFKTTFV 748

Query: 591  VDTGSQVFSHKHIKKMHIMPSLN-DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +    +  S        +  + +     +               D +    K  QEE   
Sbjct: 749  IKNDKKSKSSDIDFLFEMNETYDKTTFSLFSKKGYKNILEACFEDRVAEYNKKIQEEEIN 808

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
              YV +TR  + LI+  +     EK      + D                          
Sbjct: 809  NFYVALTRPKNNLIVLYNDRLFEEKPLENSIFKDFFSC---------------------- 846

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                      E   + + E I +    ++      S   +  NE   LN   I+      
Sbjct: 847  ----------EIGEVHKSEVIVEEETSEETQYNSTSYFIDSSNENENLNDFDINNSK--- 893

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LS 827
               LL   +    G+++H   + +    E +          +    +  K+   +    +
Sbjct: 894  --FLLETEEKRMTGILVHYFFENLKYGTEEEVTFAKNLCYKRYLSYFGKKKLDEIFSKEN 951

Query: 828  ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-----QNIFIFE 882
            I   L         S   +  +     +    +      RID++ I         I+I +
Sbjct: 952  IEMFLNKD--KEIFSKK-WDYIYNEYVLYDSIEKQ--EYRIDRLMIKDNEDGTGEIYIVD 1006

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
            YKT                 QL  Y  +LK ++    
Sbjct: 1007 YKTGGKDEN-----------QLKTYVSVLKKTFKELK 1032


>gi|169797307|ref|YP_001715100.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           AYE]
 gi|213155883|ref|YP_002317928.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii
           AB0057]
 gi|215484744|ref|YP_002326979.1| ATP-dependent DNA helicase pcrA [Acinetobacter baumannii
           AB307-0294]
 gi|294836578|ref|ZP_06781261.1| putative ATP-dependent DNA helicase [Acinetobacter sp. 6013113]
 gi|294857931|ref|ZP_06795700.1| putative ATP-dependent DNA helicase [Acinetobacter sp. 6013150]
 gi|301346572|ref|ZP_07227313.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB056]
 gi|301594476|ref|ZP_07239484.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB059]
 gi|169150234|emb|CAM88130.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           AYE]
 gi|213055043|gb|ACJ39945.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii
           AB0057]
 gi|213986256|gb|ACJ56555.1| ATP-dependent DNA helicase pcrA [Acinetobacter baumannii
           AB307-0294]
          Length = 659

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 107/666 (16%), Positives = 214/666 (32%), Gaps = 143/666 (21%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 65  AASEIVARVEQHVGAQAKGLRASTFHTFCMYLLRRN-----PQAFGLTQFSIIDRDDQLL 119

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +        K        
Sbjct: 120 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQSKLSEAL-----LKQLPEAYEY 167

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-WIRYKIDQEINHILIDEV 185
            +    L   YE+ K++   LD++D++      L+  +    W+          +L+DE+
Sbjct: 168 KSQIAELMKTYEQRKRERNFLDYDDILSIVAVHLQNSEALTNWVAGFCQA----LLVDEM 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 224 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I  L L++RST +IL + + + S                +   +  G+ 
Sbjct: 273 --------DAVIHTLDLNYRSTQEILDLSNWLLSHSP---------IDYQKQLQAHRGKG 315

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              QL        +                          A  IA  +            
Sbjct: 316 QKPQLHLFGNEFEE--------------------------ANWIAQDLIERHQQG----- 344

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D +VLVR       +       +    I         L +   +KD+++L 
Sbjct: 345 -----ANWYDHMVLVRSGYSARYLEGAFIAAE----IPYRFIGGVKLLESAHVKDVLSLL 395

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV- 484
           R + + +DDL+++  L +      +    K+  +      V E  Q+    G    Q + 
Sbjct: 396 RIVSNPQDDLAWMRFL-TLWDGIGDVGASKLAQELMSISEVEERCQRLERHGKVPLQAIL 454

Query: 485 ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
               +  + + +  +   +       +       Q + ++  +      D       ++ 
Sbjct: 455 ILKQLDVLQQHVEASIGLALDALSEQL------EQNYKTKDWSRRARDFDLVKQLARKH- 507

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL E + E    P +I +   + + + V ++T+H+AKG E  V ++         
Sbjct: 508 ----ASLGEFLEEYVLEPISISEIEKAGDDDLVTLITIHSAKGAEQKVCYVP-------- 555

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                         N              EE  R+LYV +TRA 
Sbjct: 556 --------------------------HVSPNQYPYARAQGDFDEVEEERRVLYVALTRAE 589

Query: 660 DQLIIC 665
           ++LI+ 
Sbjct: 590 NELILT 595


>gi|300669638|sp|Q9PLT8|EX5B_CHLMU RecName: Full=Exodeoxyribonuclease V beta chain
          Length = 1026

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 131/939 (13%), Positives = 271/939 (28%), Gaps = 176/939 (18%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
                L    + ++  +     ++  P   +    ++Q    +       +L    + QKF
Sbjct: 223  QYKHLSPLSLEELQDFSLRFKQSDLPIDRELPDFVKQF---ETDPNSLDILFFPGMVQKF 279

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
              + N   +++      L   LK                   +      TL K +  H +
Sbjct: 280  QEE-NRNKKKLGPPFSPLDPFLKDWL---------LIAQPFCQKEPIFHTLLKSVQQHLK 329

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                ++     ++ I     LL + D    +  ++ ++   +LIDE QDT   QW++   
Sbjct: 330  TYCAQS--YSHDESIATLESLLAQNDH---VVSQLRKQFQLVLIDEFQDTDKRQWKIFSK 384

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            L         +     +LF +GD KQSIY +  A+    L+ K    K         S +
Sbjct: 385  LFA-------SPDYSGSLFLIGDPKQSIYEWRNADLPTYLQAKNSFPKE--------SQL 429

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  ++RST  ++  ++ +FS   +    +  +      +S         +         
Sbjct: 430  ILDTNYRSTPQLMQALNHLFS-LPSPFLETPQTILYHPLQSKGSASTSYSEFRPIHFFTT 488

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                                       A  I         + T         I   ++ V
Sbjct: 489  QDSQEE---------------------ALWI---------SKTASYLRSTFAIPFGNMAV 518

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA-IKDLMALGRFILSQEDDLSF 437
            LV+              L     I +       + D       L+ L   +L  E+    
Sbjct: 519  LVQDYPQALK-------LITHSTIPMAYCKEKRIFDRTESPYLLILLLEALLYPENQQKI 571

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
              +L S  F+ S  D   I        +++  +  + +   S      K +         
Sbjct: 572  QAILLSRFFHLSATD---IHQHLKIFSSLFFMLNTYLHQY-SLLATFYKLMG-------- 619

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                     +     G     +  G+ +   L+E   +  +  +N +  L  LI+ L+  
Sbjct: 620  -------ETVFSQTIGETLLQTPLGDIIFQELEELCLYLDKTTENPHHKLFHLINILDTG 672

Query: 558  --PPTIKRAHSANHNEV-RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 +  +  +N + V +I TVH++KGLE  VVF                         
Sbjct: 673  KYDEELSFSSQSNDDNVLKITTVHSSKGLEYDVVFCSSLNK------------------- 713

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                    +K+ +   + R +YV  TRA   L I   S     +
Sbjct: 714  ------------------------VKEKSPSVHMREMYVACTRAKKFLFIPFSSIEKRLQ 749

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
             + + +      +   +D     ++   + + + + +             +  E+   + 
Sbjct: 750  SNKKVSALANYANITQHDNIPHLVETLTASHPEFFSSG-----------TQPPESNISIF 798

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---NQTFNRGLIIHKLLQ 791
             E    ++ FS         Y  + +T         + + S          G +IHKLL+
Sbjct: 799  SEPLPEQEFFSLPILSSQPIYSFSSTTESQYFTEPFQEISSSSLFPGGSLTGTLIHKLLE 858

Query: 792  VIFTLPEHKRKNFITS--------YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
             +        +                    +   K Y      +  +  +  +      
Sbjct: 859  SLSGNFNASLEEITHKAQTLLKNTILEGFESIISEKIYTAFSTKLPFVSGSFALKDVHPY 918

Query: 844  DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPYT 899
            +      V       +   +  G +D         FI ++KT     +      + +   
Sbjct: 919  NIR----VEETFLLQENGELWQGIVDLFFEHNNRFFIIDWKTSFLGDEPSLYSPDKLLLY 974

Query: 900  HIAQ-LS----IYEKI----LKDSYPNKSLVCLLIYVSE 929
               Q L     +Y++     L     +  +    +++  
Sbjct: 975  IQRQGLDKQGVLYKRAAKKFLHQFNSSLQIEMAFVFIRG 1013


>gi|270284798|ref|ZP_06194192.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
            Nigg]
 gi|270288828|ref|ZP_06195130.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
            Weiss]
 gi|301336178|ref|ZP_07224380.1| exodeoxyribonuclease V beta chain [Chlamydia muridarum MopnTet14]
          Length = 1026

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 131/939 (13%), Positives = 271/939 (28%), Gaps = 176/939 (18%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
                L    + ++  +     ++  P   +    ++Q    +       +L    + QKF
Sbjct: 223  QYKHLSPLSLEELQDFSLRFKQSDLPIDRELPDFVKQF---ETDPNSLDILFFPGMVQKF 279

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
              + N   +++      L   LK                   +      TL K +  H +
Sbjct: 280  QEE-NRNKKKLGPPFSPLDPFLKDWL---------LIAQPFCQKEPIFHTLLKSVQQHLK 329

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                ++     ++ I     LL + D    +  ++ ++   +LIDE QDT   QW++   
Sbjct: 330  TYCAQS--YSHDESIATLESLLAQNDH---VVSQLRKQFQLVLIDEFQDTDKRQWKIFSK 384

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            L         +     +LF +GD KQSIY +  A+    L+ K    K         S +
Sbjct: 385  LFA-------SPDYSGSLFLIGDPKQSIYEWRNADLPTYLQAKNSFPKE--------SQL 429

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  ++RST  ++  ++ +FS   +    +  +      +S         +         
Sbjct: 430  ILDTNYRSTPQLMQALNHLFS-LPSPFLETPQTILYHPLQSKGSASTSYSEFRPIHFFTT 488

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                                       A  I         + T         I   ++ V
Sbjct: 489  QDSQEE---------------------ALWI---------SKTASYLRSTFAIPFGNMAV 518

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA-IKDLMALGRFILSQEDDLSF 437
            LV+              L     I +       + D       L+ L   +L  E+    
Sbjct: 519  LVQDYPQALK-------LITHSTIPMAYCKEKRIFDRTESPYLLILLLEALLYPENQQKI 571

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
              +L S  F+ S  D   I        +++  +  + +   S      K +         
Sbjct: 572  QAILLSRFFHLSATD---IHQHLKIFSSLFFMLNTYLHQY-SLLATFYKLMG-------- 619

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                     +     G     +  G+ +   L+E   +  +  +N +  L  LI+ L+  
Sbjct: 620  -------ETVFSQTIGETLLQTPLGDIIFQELEELCLYLDKTTENPHHKLFHLINILDTG 672

Query: 558  --PPTIKRAHSANHNEV-RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 +  +  +N + V +I TVH++KGLE  VVF                         
Sbjct: 673  KYDEELSFSSQSNDDNVLKITTVHSSKGLEYDVVFCSSLNK------------------- 713

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                    +K+ +   + R +YV  TRA   L I   S     +
Sbjct: 714  ------------------------VKEKSPSVHMREMYVACTRAKKFLFIPFSSIEKRLQ 749

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
             + + +      +   +D     ++   + + + + +             +  E+   + 
Sbjct: 750  SNKKVSALANYANITQHDNIPHLVETLTASHPEFFSSG-----------TQPPESNISIF 798

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---NQTFNRGLIIHKLLQ 791
             E    ++ FS         Y  + +T         + + S          G +IHKLL+
Sbjct: 799  SEPLPEQEFFSLPILSSQPIYSFSSTTESQYFTEPFQEISSSSLFPGGSLTGTLIHKLLE 858

Query: 792  VIFTLPEHKRKNFITS--------YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
             +        +                    +   K Y      +  +  +  +      
Sbjct: 859  SLSGNFNASLEEITHKAQTLLKNTILEGFESIISEKIYTAFSTKLPFVSGSFALKDVHPY 918

Query: 844  DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPYT 899
            +      V       +   +  G +D         FI ++KT     +      + +   
Sbjct: 919  NIR----VEETFLLQENGELWQGIVDLFFEHNNRFFIIDWKTSFLGDEPSLYSPDKLLLY 974

Query: 900  HIAQ-LS----IYEKI----LKDSYPNKSLVCLLIYVSE 929
               Q L     +Y++     L     +  +    +++  
Sbjct: 975  IQRQGLDKQGVLYKRAAKKFLHQFNSSLQIEMAFVFIRG 1013


>gi|242310535|ref|ZP_04809690.1| ATP-dependent helicase [Helicobacter pullorum MIT 98-5489]
 gi|239522933|gb|EEQ62799.1| ATP-dependent helicase [Helicobacter pullorum MIT 98-5489]
          Length = 676

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 99/748 (13%), Positives = 213/748 (28%), Gaps = 208/748 (27%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPT-ILKKAQTLQQASQTQCIEERFSLLSSFFL 74
           +   + P     ++  NK     +         K  + ++  +            +S  L
Sbjct: 43  LESGITPNEILLLTFTNKAAQEMLARLELRFDSKIVKQIEAGTFHAVAYRYLKSKNSIIL 102

Query: 75  TQKFTPQ---KNIITQEI----NKKSPDLKEKLKKSQ---------DEFIKIRDRFNTYK 118
            Q    +   K++  + +    ++  P     L             ++F    ++ N  +
Sbjct: 103 KQPRELKVLFKSLYDRRVFLNVSQTPPYGANYLYDLFSLYQNATINEDFSSWLEKRNAEQ 162

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           M       + +   +   +   KK+    D+ DL+     +  K ++     +       
Sbjct: 163 MQY-----VEIYLDVWEEFRNLKKEYHYADYNDLL-----IFYKEEILKDKLF-----FK 207

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            IL+DE QDT+ +Q  ++++L            +P ++F VGD  QSIY+F+GA+   + 
Sbjct: 208 EILVDEYQDTNPLQDSILQAL------------NPPSIFCVGDYDQSIYAFNGADISIIG 255

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             K              +I  L  ++RST  IL + ++V          + +   T    
Sbjct: 256 SFKERYPN--------GNIYSLTKNYRSTEPILNLANRVIEKNPRIYPKTLEVVKTQNF- 306

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                  G   L                                 +  + IA  I     
Sbjct: 307 -------GMPTLLVY--------------------------DELFLQYQGIANKIK---- 329

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                          K++ V+ R       I    R       I           D   +
Sbjct: 330 ---------LSNRPYKEVAVIFRNNSSADGIEASLRE----IGIPTRRKGGISFFDSKEV 376

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------------------- 459
             ++ L   + + +D +SF+ +L S +          I                      
Sbjct: 377 VYMLNLCSLLYNPKDMMSFIHVL-SHIKGVGNAMAKDIYEALLVLGDGNPVSGILKPNKE 435

Query: 460 -------RHETETVYEYIQKFANCGISKF----------------------QHVIKYIHE 490
                  + +   +  +   FA   +++F                         +  ++E
Sbjct: 436 IKEPYKKKIQNTQLGLFDDFFAMGNVARFSYLDSNFRDNPVLSHSKLTKEGAEFLNALYE 495

Query: 491 L-------------IHIAQFCSPHDFFTLILGAKKGRQQ---FISRFGNEVIDVLDEFLN 534
                         I   +           L  ++   +          E ++ ++  ++
Sbjct: 496 FFSSFGVSDKPYYLISKVREFPIFKMVAQKLAKERAITKEGGISQEKYQESLERIERKIS 555

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                  + Y  +   ++ +      +     +    V ++++H +KGLE   V++VD  
Sbjct: 556 LLRDL-ASHYQDIGRFLNAMILGSSEM-----SEGEGVNLLSIHASKGLEFSEVYIVDLM 609

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              F +K                                      +  + EE  RL YV 
Sbjct: 610 EGRFPNK----------------------------------KLMNQGGSLEEERRLFYVA 635

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWY 682
           +TRA + L +        +  S + + +
Sbjct: 636 VTRAKENLYLSYAKKDVMKNISYEGSIF 663


>gi|290782532|gb|AAF38900.2| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
            Nigg]
          Length = 1026

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 131/939 (13%), Positives = 271/939 (28%), Gaps = 176/939 (18%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
                L    + ++  +     ++  P   +    ++Q    +       +L    + QKF
Sbjct: 223  QYKHLSPLSLEELQDFSLRFKQSDLPIDRELPDFVKQF---ETDPNSLDILFFPGMVQKF 279

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
              + N   +++      L   LK                   +      TL K +  H +
Sbjct: 280  QEE-NRNKKKLGPPFSPLDPFLKDWL---------LIAQPFCQKEPIFHTLLKSVQQHLK 329

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                ++     ++ I     LL + D    +  ++ ++   +LIDE QDT   QW++   
Sbjct: 330  TYCAQS--YSHDESIATLESLLAQNDH---VVSQLRKQFQLVLIDEFQDTDKRQWKIFSK 384

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            L         +     +LF +GD KQSIY +  A+    L+ K    K         S +
Sbjct: 385  LFA-------SPDYSGSLFLIGDPKQSIYEWRNADLPTYLQAKNSFPKE--------SQL 429

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  ++RST  ++  ++ +FS   +    +  +      +S         +         
Sbjct: 430  ILDTNYRSTPQLMQALNHLFS-LPSPFLETPQTILYHPLQSKGSASTSYSEFRPIHFFTT 488

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                                       A  I         + T         I   ++ V
Sbjct: 489  QDSQEE---------------------ALWI---------SKTASYLRSTFAIPFGNMAV 518

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA-IKDLMALGRFILSQEDDLSF 437
            LV+              L     I +       + D       L+ L   +L  E+    
Sbjct: 519  LVQDYPQALK-------LITHSTIPMAYCKEKRIFDRTESPYLLILLLEALLYPENQQKI 571

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
              +L S  F+ S  D   I        +++  +  + +   S      K +         
Sbjct: 572  QAILLSRFFHLSATD---IHQHLKIFSSLFFMLNTYLHQY-SLLATFYKLMG-------- 619

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                     +     G     +  G+ +   L+E   +  +  +N +  L  LI+ L+  
Sbjct: 620  -------ETVFSQTIGETLLQTPLGDIIFQELEELCLYLDKTTENPHHKLFHLINILDTG 672

Query: 558  --PPTIKRAHSANHNEV-RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 +  +  +N + V +I TVH++KGLE  VVF                         
Sbjct: 673  KYDEELSFSSQSNDDNVLKITTVHSSKGLEYDVVFCSSLNK------------------- 713

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                    +K+ +   + R +YV  TRA   L I   S     +
Sbjct: 714  ------------------------VKEKSPSVHMREMYVACTRAKKFLFIPFSSIEKRLQ 749

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
             + + +      +   +D     ++   + + + + +             +  E+   + 
Sbjct: 750  SNKKVSALANYANITQHDNIPHLVETLTASHPEFFSSG-----------TQPPESNISIF 798

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---NQTFNRGLIIHKLLQ 791
             E    ++ FS         Y  + +T         + + S          G +IHKLL+
Sbjct: 799  SEPLPEQEFFSLPILSSQPIYSFSSTTESQYFTEPFQEISSSSLFPGGSLTGTLIHKLLE 858

Query: 792  VIFTLPEHKRKNFITS--------YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
             +        +                    +   K Y      +  +  +  +      
Sbjct: 859  SLSGNFNASLEEITHKAQTLLKNTILEGFESIISEKIYTAFSTKLPFVSGSFALKDVHPY 918

Query: 844  DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPYT 899
            +      V       +   +  G +D         FI ++KT     +      + +   
Sbjct: 919  NIR----VEETFLLQENGELWQGIVDLFFEHNNRFFIIDWKTSFLGDEPSLYSPDKLLLY 974

Query: 900  HIAQ-LS----IYEKI----LKDSYPNKSLVCLLIYVSE 929
               Q L     +Y++     L     +  +    +++  
Sbjct: 975  IQRQGLDKQGVLYKRAAKKFLHQFNSSLQIEMAFVFIRG 1013


>gi|15834632|ref|NP_296391.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum
            Nigg]
          Length = 1026

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 131/939 (13%), Positives = 271/939 (28%), Gaps = 176/939 (18%)

Query: 19   DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
                L    + ++  +     ++  P   +    ++Q    +       +L    + QKF
Sbjct: 223  QYKHLSPLSLEELQDFSLRFKQSDLPIDRELPDFVKQF---ETDPNSLDILFFPGMVQKF 279

Query: 79   TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
              + N   +++      L   LK                   +      TL K +  H +
Sbjct: 280  QEE-NRNKKKLGPPFSPLDPFLKDWL---------LIAQPFCQKEPIFHTLLKSVQQHLK 329

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                ++     ++ I     LL + D    +  ++ ++   +LIDE QDT   QW++   
Sbjct: 330  TYCAQS--YSHDESIATLESLLAQNDH---VVSQLRKQFQLVLIDEFQDTDKRQWKIFSK 384

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            L         +     +LF +GD KQSIY +  A+    L+ K    K         S +
Sbjct: 385  LFA-------SPDYSGSLFLIGDPKQSIYEWRNADLPTYLQAKNSFPKE--------SQL 429

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             L  ++RST  ++  ++ +FS   +    +  +      +S         +         
Sbjct: 430  ILDTNYRSTPQLMQALNHLFS-LPSPFLETPQTILYHPLQSKGSASTSYSEFRPIHFFTT 488

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                                       A  I         + T         I   ++ V
Sbjct: 489  QDSQEE---------------------ALWI---------SKTASYLRSTFAIPFGNMAV 518

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA-IKDLMALGRFILSQEDDLSF 437
            LV+              L     I +       + D       L+ L   +L  E+    
Sbjct: 519  LVQDYPQALK-------LITHSTIPMAYCKEKRIFDRTESPYLLILLLEALLYPENQQKI 571

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
              +L S  F+ S  D   I        +++  +  + +   S      K +         
Sbjct: 572  QAILLSRFFHLSATD---IHQHLKIFSSLFFMLNTYLHQY-SLLATFYKLMG-------- 619

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                     +     G     +  G+ +   L+E   +  +  +N +  L  LI+ L+  
Sbjct: 620  -------ETVFSQTIGETLLQTPLGDIIFQELEELCLYLDKTTENPHHKLFHLINILDTG 672

Query: 558  --PPTIKRAHSANHNEV-RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 +  +  +N + V +I TVH++KGLE  VVF                         
Sbjct: 673  KYDEELSFSSQSNDDNVLKITTVHSSKGLEYDVVFCSSLNK------------------- 713

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                    +K+ +   + R +YV  TRA   L I   S     +
Sbjct: 714  ------------------------VKEKSPSVHMREMYVACTRAKKFLFIPFSSIEKRLQ 749

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
             + + +      +   +D     ++   + + + + +             +  E+   + 
Sbjct: 750  SNKKVSALANYANITQHDNIPHLVETLTASHPEFFSSG-----------TQPPESNISIF 798

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---NQTFNRGLIIHKLLQ 791
             E    ++ FS         Y  + +T         + + S          G +IHKLL+
Sbjct: 799  SEPLPEQEFFSLPILSSQPIYSFSSTTESQYFTEPFQEISSSSLFPGGSLTGTLIHKLLE 858

Query: 792  VIFTLPEHKRKNFITS--------YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
             +        +                    +   K Y      +  +  +  +      
Sbjct: 859  SLSGNFNASLEEITHKAQTLLKNTILEGFESIISEKIYTAFSTKLPFVSGSFALKDVHPY 918

Query: 844  DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPYT 899
            +      V       +   +  G +D         FI ++KT     +      + +   
Sbjct: 919  NIR----VEETFLLQENGELWQGIVDLFFEHNNRFFIIDWKTSFLGDEPSLYSPDKLLLY 974

Query: 900  HIAQ-LS----IYEKI----LKDSYPNKSLVCLLIYVSE 929
               Q L     +Y++     L     +  +    +++  
Sbjct: 975  IQRQGLDKQGVLYKRAAKKFLHQFNSSLQIEMAFVFIRG 1013


>gi|89898806|ref|YP_515916.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta [Chlamydophila
            felis Fe/C-56]
 gi|89332178|dbj|BAE81771.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta [Chlamydophila
            felis Fe/C-56]
          Length = 1045

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 113/782 (14%), Positives = 220/782 (28%), Gaps = 140/782 (17%)

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            +  I   + +    +LIDE QDT   QW +   L  +            +LF +GD KQS
Sbjct: 357  AEEIIETLRKRFQLVLIDEFQDTDRKQWNIFSKLFAN-------EEFSGSLFLIGDPKQS 409

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY +  A+    L+ K    K         S + L  ++RS   ++  V+ +F       
Sbjct: 410  IYEWRNADLATYLKAKSTFPK--------TSQLHLINNYRSIPKLMEAVNFLFCKCSPFL 461

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
             +       I +         + +                   + SY D   Q       
Sbjct: 462  EIP--GYEPIEYHPLSPQSSESFE-----------NTQHSPIHFFSYNDVADQ------- 501

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A  I         + T         I    + +LV               L     I V 
Sbjct: 502  AAWI---------SQTASYLQSTYAIPLGRMAILVSDSAQAFD-------LIAHCSIPVS 545

Query: 406  GNDRFILTDHLAIKDLM-ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +    +        L  A    IL  E       +L S LF  +  ++ +    + E  
Sbjct: 546  FSKNKSIFHLTETYLLTLAWLEAILHPESYEKIQRVLLSSLFRHNLPEVIE----KKEFY 601

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            + Y +  +              ++  L   A   +P                       +
Sbjct: 602  STYFFSLRSYIFDHGLLATFYHFM-TLQGEALLKTP-----------------QGDLTFQ 643

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             ++ L  +L     + Q+    LQ               ++S +   ++I T+H +KGLE
Sbjct: 644  EMESLCAYLGTISSHPQHQLLYLQYFSETGRWEESLSFSSYSEDSEILKITTIHASKGLE 703

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              VVF         +                                             
Sbjct: 704  YDVVFCSGLDKSKKNKSAS----------------------------------------- 722

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             E+ R +YV  TRA  QL I   + +S+ + +    +           +  + +   + +
Sbjct: 723  -EWIREMYVACTRAKKQLFIPIQNTSSSRRNTALTNYVKQEGVYKSTSDLAESLSKEHPL 781

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                                     +  L          FS +K  ++    L     + 
Sbjct: 782  LFSL-SNTNGVASSASPAYKITPPLVFDLSPSPSKQIFSFSSVKLLLDREGSLENDVAEP 840

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTK-NAKLWPAKE 820
            +    L       +    G++IHK+L+ +     +P  K    +  +    + + +    
Sbjct: 841  ERSLELP------RGRKTGILIHKILENMAPNFKIPPSKILTTVAHFVKNTHLEGYEETI 894

Query: 821  YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI 880
             + L  + +  L     T A++     ++          KD +  G +D     +   +I
Sbjct: 895  AQKLFATFSSPLSFTTGTFALTDVVPDKIVCEESFLFSHKDQLWQGALDLFFEHKNRYYI 954

Query: 881  FEYKTHHHVPQEIEHIPYTHIA---------QLSIYEKI----LKDSYPNKSLVCLLIYV 927
             ++KT         +     +          Q +IY       L+    +  +    +++
Sbjct: 955  IDWKTSFLGETASAYSQENLLNYIKEQNLDYQGAIYTHAAQRFLQQFDISDDVEIGFVFI 1014

Query: 928  SE 929
              
Sbjct: 1015 RG 1016


>gi|283957241|ref|ZP_06374702.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791253|gb|EFC30061.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 676

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 100/615 (16%), Positives = 199/615 (32%), Gaps = 180/615 (29%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   +DF DL+IN  +LLK+             E + IL+DE QD
Sbjct: 168 EIYEDILKEYDNEKKRFNYVDFNDLLINLKELLKEE----------KYEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNTLQSSLIEAFHS------------KSLFCVGDYDQSIYAFNGADINIIGGFKDRF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----KDAKIFSLNKNYRSSRSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V+++D    P   ++   FD                  I+ MI          
Sbjct: 298 ----ELIVTRNDEFKAPSLLTFEELFDQ--------------YQNIAKMI---------L 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       +    R       I+ V        + L +K   ++   
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGVEVALRE----QGIASVRKGSGSFFESLEVKAFSSMLAL 386

Query: 428 ILSQEDDLSFVCM--------------LKSPLFNFSEDDIFK------------ICTQRH 461
           +++ +D ++F+ +              +   L       + K               +R+
Sbjct: 387 VVNPKDIMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGSLIKGFLDPDKNVNLQNHQKRN 446

Query: 462 ETETVYEYIQKFANCGISKF-------------------QHVIKYIHELIHIAQFCSPHD 502
               ++  +++ A+    KF                      ++ I+  +  A       
Sbjct: 447 YQLGLFADLEELASETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSL 506

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ---------------NSYSSL 547
               ++      ++       +        ++   ++E                 +YS +
Sbjct: 507 ALVNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI 566

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + L      +     ++   V +++VH +KGLE  +VF++D     F ++ +  M 
Sbjct: 567 YKYYNFLTLGASEM-----SSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMG 621

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                              + EE  RL YV +TRA + L +   
Sbjct: 622 G----------------------------------SLEEERRLFYVAVTRAKNILYLSYA 647

Query: 668 SNTSNEKKSNQRTWY 682
               N+K S   + +
Sbjct: 648 KYDKNKKTSFAPSRF 662


>gi|163737322|ref|ZP_02144740.1| UvrD/REP helicase domain protein [Phaeobacter gallaeciensis BS107]
 gi|161389926|gb|EDQ14277.1| UvrD/REP helicase domain protein [Phaeobacter gallaeciensis BS107]
          Length = 1138

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 123/871 (14%), Positives = 257/871 (29%), Gaps = 128/871 (14%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
              +     F +  + ++   +   G P+  +     +  +  +    R  L     L   
Sbjct: 272  AWIGTFHSFGLDLLRRFHDRA---GLPSDPRLIDATEAIALLEDEFPRLRLTHFNDLWDP 328

Query: 78   FTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
                ++I++     K   + + + ++   +     +        +  L        +   
Sbjct: 329  TDNLRSILSAISRAKDEVIDQHRYRELAQQMADAAETGEDKIAAEKCLEI----ASVYDL 384

Query: 137  YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            YE+ K +   +DF DL+     L++       +R ++    +H+L+DE QD +     ++
Sbjct: 385  YEQLKAERGAVDFGDLVARPTALIESDRA---VRTELQGRYDHVLVDEYQDVNRASVRLL 441

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            R+L              + L+ VGD KQSIY F GA    + R +       T       
Sbjct: 442  RAL----------KPDGKNLWVVGDAKQSIYRFRGASSYNIDRFE-------TEDFPGGK 484

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
             ++L +++RS+ +I        +    A G   ++              G   +    VS
Sbjct: 485  SLQLSMNYRSSQEICDTFSAFATTRMAASGFQANAFK------------GKSGVSPSFVS 532

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                    ++ +                 AR IA                       +D 
Sbjct: 533  VESKDHEIEEIA-----------------ARVIA---------------ACDDTTSFRDQ 560

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             V+ +       +            I V+      L D   IK+ ++L   ++       
Sbjct: 561  AVICKGNARLAEVAAGLEAC----GIPVLFLG--PLFDRPEIKEALSLLSLVIDPRAMGL 614

Query: 437  FVCMLKSPLFNFSED---DIFKICTQRHETETVYEYIQKFANCGISKFQH-VIKYIHELI 492
                   P     ED    I  +   +      +  +         + +      I    
Sbjct: 615  TCVASMQPFQMPIEDVAVAIETVRASKKPQLLDWRTVLAMVPGMSERGRASAQALIDAFE 674

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV----LDEFLNFTLRN--EQNSYS- 545
             I    +     T I   +      I+   +E        L +F NF      E++ Y  
Sbjct: 675  GIEPTATAWQIITKIYLDRTRFAADIATQAHEGNANPALALWQFQNFLRSALPEKSGYPV 734

Query: 546  -SLQELISEL----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              L E I  L    ++       A + + + VR+MT+H +KGLE  V+ L    S     
Sbjct: 735  RDLLEHIRRLVILSDERDLRDLPAAAQSIDAVRLMTIHGSKGLEFKVLHLPSLTSGSIPR 794

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               +   + P      G       +    +              EE   L +V ++RA D
Sbjct: 795  SAKQSRGLPPPDGMIEGPVFRGSDAVDAGH-------------DEEQRCLFFVALSRAED 841

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L +   +  SN  + ++ ++ D +    ++   +  ++      +D  +  +       
Sbjct: 842  SLFLYAPNKKSNGHRQSRSSFVDDISGQVYDQNPICTVRDIAGEAEDFKLEVDGIARM-S 900

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             + L   +   +      + +     +++     +    + +D        +        
Sbjct: 901  PSQLATFDKCPRRFFFAHVLQVGGRRMESAPMRMHNAVQAVVDELTARPDHAPDETE--- 957

Query: 781  NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
                     +Q I              Y  +  ++        LL    +L +       
Sbjct: 958  ---------MQTIIDAAWAAHGPTEHGYAAEYRQISDE-----LLQFFIQLRQGEHRREL 1003

Query: 841  MSCDSY---SEVSVSGKINCPKKDIIISGRI 868
             S       +EV V+           +  RI
Sbjct: 1004 QSLSLRFEDAEVLVTAHEQIETGHSTVFRRI 1034


>gi|320531921|ref|ZP_08032829.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135863|gb|EFW27903.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 886

 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 117/776 (15%), Positives = 210/776 (27%), Gaps = 139/776 (17%)

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
               +   +L +A       E  S  +S  L       +N++T  I   + DL + L + 
Sbjct: 154 ARSWQIVSSLLEARTLPLPNESLSHNASAALVLGDALSQNLLT--IEDAAKDLAD-LTEQ 210

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                 I+          + +A       + A   E K+ + +LDF D I     + +  
Sbjct: 211 FTALAAIKGCKTLVGKAPAVMAEWEALLDVVAELREYKRHHGLLDFGDQIALACTIAETV 270

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
             +A    ++  +   +L+DE QDTS+ Q  ++ +L  D             + AVGD  
Sbjct: 271 PDAA---SQVRAQYPAVLLDEFQDTSVAQVRLLSALFADSG-----------VTAVGDPH 316

Query: 224 QSIYSFHGAEPKRVLREKRIN----QKRATNAGQKF---SIIELPLSFRSTADILTVVDK 276
           Q+IY + GA    +    +        R  +         ++EL  S+R+ + IL V + 
Sbjct: 317 QAIYGWRGASAGALDTFHQRFNPPGPARLDSGASPADATPVLELSTSWRNDSTILDVANV 376

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V        G+ ED      H +    +                  +           + 
Sbjct: 377 V--SAPLRSGVVEDGDPVGEHITVAPLRP---------RPAAFGLESGAVHGAFLQDPAE 425

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
              +  + LA                      R   + ++ VL R R             
Sbjct: 426 EARTVIAFLAE---------------------RWSPSAEMAVLCRTRAQM----DPIAAE 460

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
             +  +         +     + D+ AL       E     V +L    F     D+  +
Sbjct: 461 LEEAGLPYTIVGLGGMLYVPEVADVRALLTVASDPERGDRVVRLLTG--FGIGASDLRAL 518

Query: 457 CTQRHETETVYEY--------IQKFANCGISKFQHVIKYIHEL----------------- 491
                E                              +  +                    
Sbjct: 519 AALARELTRPAPEGDQAGSPVHGDQVEADAPLLSEALDTLLRWHEDGAQEEAAATRDLTE 578

Query: 492 ---------------IHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVLDEFLNF 535
                          I  A      D   +   A     +  +R G       LD F   
Sbjct: 579 AGRAVALRTARAIQRIREADSLPLPDLVAMAEQALDLDIEIAARVGHPMGHRALDSFHET 638

Query: 536 TLRNE-QNSYSSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFL 590
            L         +L   +  L+                +   V+I+TVH AKGLE  VV +
Sbjct: 639 ALAFATDTDAPTLTGFLDWLDAAEEHEDAMSAPEVEPSPGAVQILTVHAAKGLEWDVVVV 698

Query: 591 VDTGSQVFSH----------------KHIKKMHIMPSLNDDPGIPIW--------IPQSK 626
                QVF                       +   P   D   +P +        +    
Sbjct: 699 PGMDEQVFPSYTSAVKDDLRVAETGWMGSTSIFPFPLRADADDLPPFTVGDLDPAMTDKP 758

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY---- 682
                +S   + L + +  E  RL YV  TRA   L++     +    K  + + +    
Sbjct: 759 LLTETMSAYKEALGRQSLREERRLAYVAFTRARHDLLLTGSHLSKTASKPRRPSRFLTEL 818

Query: 683 ---DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
              D++           + +        +   +       E    +  ET  +   
Sbjct: 819 QRRDLLLPYAEGWVDFDESRPNPLTALTQVGTWPLDAGGMETQSSQTPETAGKDAP 874


>gi|260549135|ref|ZP_05823356.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
 gi|260407863|gb|EEX01335.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624]
          Length = 659

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 106/666 (15%), Positives = 214/666 (32%), Gaps = 143/666 (21%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 65  AASEIVARVEQHVGAQAKGLRASTFHTFCMYLLRRN-----PQAFGLTQFSIIDRDDQLL 119

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +        K        
Sbjct: 120 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQSKLSEAL-----LKQLPEAYEY 167

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-WIRYKIDQEINHILIDEV 185
            +    L   YE+ K++   LD++D++      L+  +    W+          +L+DE+
Sbjct: 168 KSQIAELMKTYEQRKRERNFLDYDDILSIVAVHLQNSEALTNWVAGFCQA----LLVDEM 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 224 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I  L L++RST +IL + + + +                +   +  G+ 
Sbjct: 273 --------DAVIHTLDLNYRSTQEILDLSNWLLAHSP---------IDYQKQLQAHRGKG 315

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              QL        +                          A  IA  +            
Sbjct: 316 QKPQLHLFGNEFEE--------------------------ANWIAQDLIERHQQG----- 344

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D +VLVR       +       +    I         L +   +KD+++L 
Sbjct: 345 -----ANWYDHMVLVRSGYSARYLEGAFIAAE----IPYRFIGGVKLLESAHVKDVLSLL 395

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV- 484
           R + + +DDL+++  L +      +    K+  +      V E  Q+    G    Q + 
Sbjct: 396 RIVSNPQDDLAWMRFL-TLWDGIGDVGASKLAQELMSISEVEERCQRLERHGKVPLQAIL 454

Query: 485 ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
               +  + + +  +   +       +       Q + ++  +      D       ++ 
Sbjct: 455 ILKQLDVLQQHVEASIGLALDALSEQL------EQNYKTKDWSRRARDFDLVKQLARKH- 507

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL E + E    P +I +   + + + V ++T+H+AKG E  V ++         
Sbjct: 508 ----ASLGEFLEEYVLEPISISEIEKAGDDDLVTLITIHSAKGAEQKVCYVP-------- 555

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                         N              EE  R+LYV +TRA 
Sbjct: 556 --------------------------HVSPNQYPYARAQGDFDEVEEERRVLYVALTRAE 589

Query: 660 DQLIIC 665
           ++LI+ 
Sbjct: 590 NELILT 595


>gi|126640515|ref|YP_001083499.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           ATCC 17978]
 gi|126386399|gb|ABO10897.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii
           ATCC 17978]
          Length = 659

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 106/666 (15%), Positives = 214/666 (32%), Gaps = 143/666 (21%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 65  AASEIVARVEQHVGAQAKGLRASTFHTFCMYLLRRN-----PQAFGLTQFSIIDRDDQLL 119

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +        K        
Sbjct: 120 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQSKLSEAL-----LKQLPEAYEY 167

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-WIRYKIDQEINHILIDEV 185
            +    L   YE+ K++   LD++D++      L+  +    W+          +L+DE+
Sbjct: 168 KSQIAELMKTYEQRKRERNFLDYDDILSIVAVHLQNSEALTNWVAGFCQA----LLVDEM 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 224 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I  L L++RST +IL + + + +                +   +  G+ 
Sbjct: 273 --------DAVIHTLDLNYRSTQEILDLSNWLLAHSP---------IDYQKQLQAHRGKG 315

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              QL        +                          A  IA  +            
Sbjct: 316 QKPQLHLFGNEFEE--------------------------ANWIAQDLIERHQQG----- 344

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D +VLVR       +       +    I         L +   +KD+++L 
Sbjct: 345 -----ANWYDHMVLVRSGYSARYLEGAFIAAE----IPYRFIGGVKLLESAHVKDVLSLL 395

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV- 484
           R + + +DDL+++  L +      +    K+  +      V E  Q+    G    Q + 
Sbjct: 396 RIVSNPQDDLAWMRFL-TLWDGIGDVGASKLAQELMSISEVEERCQRLERHGKVPLQAIL 454

Query: 485 ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
               +  + + +  +   +       +       Q + ++  +      D       ++ 
Sbjct: 455 ILKQLDVLQQHVEASIGLALDALSEQL------EQNYKTKDWSRRARDFDLVKQLARKH- 507

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL E + E    P +I +   + + + V ++T+H+AKG E  V ++         
Sbjct: 508 ----ASLGEFLEEYVLEPISISEIEKAGDDDLVTLITIHSAKGAEQKVCYVP-------- 555

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                         N              EE  R+LYV +TRA 
Sbjct: 556 --------------------------HVSPNQYPYARAQGDFDEVEEERRVLYVALTRAE 589

Query: 660 DQLIIC 665
           ++LI+ 
Sbjct: 590 NELILT 595


>gi|91784748|ref|YP_559954.1| putative DNA helicase [Burkholderia xenovorans LB400]
 gi|91688702|gb|ABE31902.1| Putative DNA helicase [Burkholderia xenovorans LB400]
          Length = 708

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 108/739 (14%), Positives = 219/739 (29%), Gaps = 125/739 (16%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQ 60
            R  L +      I              +  +       G   + + A    L  A    
Sbjct: 79  RRAALEMIRRVTRIAGAALGTRAALAQGL-TWSGTFHSVGARLLREYADLIGLAPAFTIN 137

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++        + ++     +       +  ++  +     ++ D    +   
Sbjct: 138 DREDSADLMNLVRHELGLSAKERRFPAKG--TCFAIYSRVVNTGASLSQVLD--KAFPWC 193

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +   A L +   L A Y EAK+K  VLD++DL++  + +  +  ++A     +    +H+
Sbjct: 194 REWEADLRM---LFAAYVEAKQKQSVLDYDDLLLYWSLMAAEPAIAAD----LSARFDHV 246

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF GA  + +L  
Sbjct: 247 LVDEYQDTNRLQASILLAL----------KPDGRGLTVVGDDAQSIYSFRGATVRNILDF 296

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            + L  ++RSTA IL   + V  +       +  +      R  
Sbjct: 297 PAHF-------DPPARQVTLERNYRSTAPILAASNAVIELASERYTKNLWTDKASAQRP- 348

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                              L   +  +  AR +   +       
Sbjct: 349 ----------------------------------RLVSVADEADQARYVVEQVLEAREQG 374

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     ++ K   VL R    +  +            I  V        D + +KD
Sbjct: 375 ----------MKLKSQAVLFRAAHHSAALEIEL----TRRNIPFVKFGGLKFLDSVHVKD 420

Query: 421 LMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANC 476
           ++A+ R+  +  D ++   +  L   +   +   +      R  +    +       A  
Sbjct: 421 VLAVLRWAENPRDRVAGFRVVQLLPGVGPATAAKVLDEIVARAGSGNPADTAGGALAAFA 480

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
             ++ Q       +L+               +  +           +  I   D      
Sbjct: 481 APARAQEDWHPFVKLMSSVYGRQTPWPAEFEMVRRWYEPHLERNHEDAAIRHADVLQ--- 537

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVD 592
           + +   +Y+S +  ++EL   PP      S     + + + + T+H+AKG E   VF+++
Sbjct: 538 MESIAGTYASRERFLTELTLDPPDATSDESGVPLIDEDYLILSTIHSAKGQEWRNVFVLN 597

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                                                           +   +E  RLLY
Sbjct: 598 GVDGCIPSDLGTGS----------------------------------EEEIDEERRLLY 623

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V MTRA + L I          +++    +     +      +  +    +  +    + 
Sbjct: 624 VAMTRAKEDLHIVVPQRFYVHNQTHMGDRHVWASRTRFIPAHLMPLFDAYAWPRVPVPSA 683

Query: 713 EWSTHHPENTPLEREETIK 731
             +         + E   K
Sbjct: 684 PTAAGLAAAAQAKIEIAAK 702


>gi|28897857|ref|NP_797462.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838039|ref|ZP_01990706.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810]
 gi|260877018|ref|ZP_05889373.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034]
 gi|260899090|ref|ZP_05907531.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466]
 gi|28806070|dbj|BAC59346.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748573|gb|EDM59432.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810]
 gi|308089138|gb|EFO38833.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466]
 gi|308093677|gb|EFO43372.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034]
          Length = 1139

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/706 (15%), Positives = 209/706 (29%), Gaps = 117/706 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSM------ETGNPTILKKAQTLQQASQTQC 61
           +  E  E +                    L +      E G     +  +  +     + 
Sbjct: 252 AAGEMAERLASKNKEAVASMWIGTFHAFGLDLVRRFYSELGFEKEPRLLERTEAVEALED 311

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKIRDRFNTYKM 119
              R  L     L        N+++     K    D ++  + +Q+         +    
Sbjct: 312 EFPRLGLEHFRNLYDPTEHITNLLSAISRAKDEVVDHRDYFRLAQEMLDSADTEESKTAA 371

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            K+          +   YE  K+    +DF DL++     L+       +        +H
Sbjct: 372 LKAKE-----VATVYEAYERLKRAKGCIDFGDLVLLPVKFLENN---VELFKHFQSLYDH 423

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QD +     ++  L  +             L+AVGD +QSIY F GA    + R
Sbjct: 424 VLVDEYQDVNRSSIRLLMLLCGE----------GENLWAVGDARQSIYRFRGASSVSMSR 473

Query: 240 EK-RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +                 L +++RS+ +I+                        +  
Sbjct: 474 YCTQDFPTALQG--------RLKINYRSSEEIIRA--------------------YSKFA 505

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                 +G+ +L   +  + ++ C P+ +      D           A  +A TI +M  
Sbjct: 506 FDMSANIGSPEL---IADRGETGCLPEFKVVEKADDQ----------AVVLAETIKDMQE 552

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
           +              +D  VL    +    +      L     + V+      L +   +
Sbjct: 553 SG----------YSYRDQAVLCSGNERLSQLAEQLELL----GVPVLYLG--SLFEREEV 596

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           KD+ +    +         V + + P F  S +D+  I           +     +    
Sbjct: 597 KDMFSFLSLLTD-SWGSGLVRIGRWPEFELSLEDLDVILNHLRTERCEDKGWLLDSQDIT 655

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRF-------GNEVIDVLD 530
                  + + +L    +     D    +L      + +  +R               + 
Sbjct: 656 GISSSGKEALSKLGWTFEGIDKTDHPWKVLATLIFDKTRIAARLSSSEVVSDKNRSIAIW 715

Query: 531 EFLNFTLRNEQNSYSS----------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
           + +NF         +S          ++ L+   +        A + + + VR+MT+H A
Sbjct: 716 QLMNFVRTAISAETASGLPVTRLLERVRRLLRLGDDKDLRQLPASAQSIDAVRLMTMHGA 775

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE  VV L           + K              P   P            +  LK
Sbjct: 776 KGLEFKVVHLPGMSQGTLPRTYQK--------------PACEPPFGMITGEDDTSVTMLK 821

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
              ++E   L YV M+RA D+L +   +  SN  +     +   + 
Sbjct: 822 AEHEKEQECLFYVSMSRAQDKLFMYAPAKKSNNSQWKHSPFISRIQ 867


>gi|317047247|ref|YP_004114895.1| UvrD/REP helicase [Pantoea sp. At-9b]
 gi|316948864|gb|ADU68339.1| UvrD/REP helicase [Pantoea sp. At-9b]
          Length = 1130

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 146/978 (14%), Positives = 278/978 (28%), Gaps = 164/978 (16%)

Query: 8    SLNESYELIYK-DLWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            +  E  E I + D        +   + + + L     +   L ++  +          E 
Sbjct: 252  AAGEMAERIARVDSGAAAAMWIGTFHSFGLDLVRRFHDKLNLPQSPRM------LDRTEA 305

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
              LL   F        +N+      +   D    + +++DE +         +  + +  
Sbjct: 306  VELLEHEFPKLGLVHYRNLYDPS--RIIADFLAGISRAKDEVVDASTYLKLAQAMRDSAV 363

Query: 126  SLTL---------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                            + A YE  K+++  +DF DL+     LL++ +    IR  I   
Sbjct: 364  ENDAITDAEKAIEVAKVYAAYENLKQQSECIDFGDLVSLPVKLLEENEA---IRSHIQST 420

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
              H+L+DE QD +     +++++  +             L+AVGD KQSIY F GA    
Sbjct: 421  YEHVLVDEYQDVNHSSVRLLKAICGN----------GNNLWAVGDAKQSIYRFRGASSFN 470

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            + R                    L +++RS  +I+       S                 
Sbjct: 471  MTRFGNE-------DFPGGVRYRLKMNYRSVPEIV-------STFSRFAVGMAVGDADSW 516

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             R +R       +L         S                            +A  I  M
Sbjct: 517  LRPNRGSNACKPELRFVGQGVQQSPA--------------------------LADAIQEM 550

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
             G               +D  VL    +    I      L     I V+      + +  
Sbjct: 551  RGAG----------YPYRDQAVLCTGNEKLSEIGQQLERL----GIPVLFLG--SVFERP 594

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
             IKD ++L   ++ +      V M   P F  S +D+  I     E +   ++  K    
Sbjct: 595  EIKDWLSLLSLLVDRRAMG-LVRMACLPEFTMSLEDVGNILACLREEDDWGDWRDKVNQF 653

Query: 477  GISKFQHVI--KYIHELIHIAQFCSPHDFFTLI-LGAKKGRQQFISRFGNEVIDVL---D 530
             IS        + I  L       SP      + L   +   +  +  G           
Sbjct: 654  QISANGRTALKRLIKTLDGFKGDTSPWTVLATVLLDRTRIVARLATSSGCSDRSQCIATW 713

Query: 531  EFLNFTLRNEQNSY-----SSLQELISELEQYPPTIKRAH---SANHNEVRIMTVHTAKG 582
            + LNF               +L  +   +        R     + + + VR+MT+H +KG
Sbjct: 714  QLLNFLRVQPSTGEGLFITRTLDRIRRLVRLGDDRDLRQLPVVAQSIDAVRLMTIHGSKG 773

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PVV +    +        K+    P                      ++  +     
Sbjct: 774  LEFPVVHVPGMNADTLPGYTQKQACPPPDGMIAGSK--------------ANAREQFSLE 819

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             + E   L YV ++RA DQL +      +      +  + D +  +           +  
Sbjct: 820  HKAERECLFYVALSRARDQLFLYAALRNAAGSTRRKSEYLDRIEPNLIQRNIEPHHPVIE 879

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                                 +   E+  +        +  ++ +            S +
Sbjct: 880  PPESLPIDWVADGEFKLSGDQVSLYESCPR--------RFFYTHVLQIGGRRSPTPFSKM 931

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                +     ++          II  +                       A+   A E+K
Sbjct: 932  HDAVRKVFRDMIEAES-----TIITNI---------EGSVEQALK-VEGLAEHGYAPEFK 976

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
            +L L + R   +      +      E      +      I +    D +  S        
Sbjct: 977  SLALDMVRYFNS------IREGHAPETPSVLTMKFGDIPITVQPD-DVLIYSDGRRTFRR 1029

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP------ 936
             +T H   +E   +        + +    + ++P+  +   L+++S+  V  I       
Sbjct: 1030 VRTGHKRDKEESDLGA------AAFILAARRAFPDAIVE--LVHLSDKTVTPIDLSTKVL 1081

Query: 937  ---QNKLNKAFAEISTKI 951
               Q KL+ A   IS  +
Sbjct: 1082 HNRQEKLHVALDSISRGV 1099


>gi|33863357|ref|NP_894917.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
 gi|33640806|emb|CAE21261.1| similar to UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313]
          Length = 1274

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 107/931 (11%), Positives = 246/931 (26%), Gaps = 190/931 (20%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT---------N 157
               ++          +         +  +   E +++  V+ + +L+             
Sbjct: 344  MPALQRSIADLCDGPAEQVWNHALDWGLSALAERRRQRGVMSYAELLSALDPNPQSESIA 403

Query: 158  DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
             +    D  A     + Q     LIDE QDT  +QW ++         G   HS    L 
Sbjct: 404  QI--HPDQQAPWLEALRQRYRVALIDEFQDTDPVQWRLLE--------GAFAHSPDHLLL 453

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGD KQ+IY F G +    L  +           +   I  L  +FR+T  +L  ++ +
Sbjct: 454  MVGDPKQAIYRFRGGDLNTYLHAR----------SKVDRIDALLDNFRTTTPLLDGLNHL 503

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
             +       L+  S T     + R   +G   L    + +       Q    T       
Sbjct: 504  MAPGLRRSKLNVPSLTACSGATPRPLPLGMHPLQLLNLDEDTHPTGAQPAPLT------S 557

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            + +    +   +A+ + +++ +D+             DI +LV + +         R   
Sbjct: 558  KTNLEEQIPTAVAHAVLDLLQSDSYN-------FSPSDICILVGRHRQAAS----IRQGL 606

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                +      +  +    A + L      +       S   +  S L  +  + +    
Sbjct: 607  AVAAVPTRLVSQGDVLTSEAAQVLQRFLDCLARPSHSSSLKLVACSALMQWKTEQL---- 662

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT-LILGAKKGRQQ 516
                          +              +   L  +       +      +     R +
Sbjct: 663  -----------AHAECNGELDQLALRFRNWAINLPRLGLMGCLAELLEGRTMADLSERGR 711

Query: 517  FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-----HSANHNE 571
             +              +   +  +    S+  + +      P                + 
Sbjct: 712  LLGDLYQCAQ-----LVQEVIHRQGLDASTAADWLRRQRLQPVDPVPEVRQPHSDVAESA 766

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            V ++TVH +KG+E PVV         +    +    +  S ++                +
Sbjct: 767  VAVVTVHRSKGMEYPVVICPYL----WQAPSLPHGPLWRSNSESLWCVALSTGWGKGWQL 822

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                     +++ +E  RL YV +TRA   L++        ++ +    W   V      
Sbjct: 823  SQQAY----QASLQEAERLAYVAITRACSLLMLIWARGA-KQEGNPLSAWLFGVDAIDAA 877

Query: 692  DERVKKIKLTNSINKDEWIAYEWST------HHPENTPLEREETIKQLMDEQKIPKKLFS 745
             + +   +++  +++ +                 +  PL+ E T+      +       S
Sbjct: 878  MKDLTPERMSAWLDRQQLPITVVPAQLKSMQQRWKPPPLQGELTLGPTPQRRLDLSWGRS 937

Query: 746  PIKNDINEPYILNPSTIDTKGKTNL----------------------------------- 770
                 ++  +  + S      +                                      
Sbjct: 938  SYSAWVSATHTYDGSAPADPLELEEGRDSDQQKLEPMLKLQDQSAIADASRSTPTLNWSD 997

Query: 771  -ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSI 828
               L    +    G  +H++L+ +      +  N +     +            ++   +
Sbjct: 998  QSPLGQFPRGAAAGDCLHRILERLDFCKPLQDPNAVIVIEEELRRAGLDITLLASVQDGL 1057

Query: 829  TRLLENP--------MMTTAMSCDSYSEVSVSGKINCPKK-------------------- 860
             R+L  P         +          E+S    I    K                    
Sbjct: 1058 DRVLSTPIGGSLGGLRLNQLHGQRRIHELSFDLPIAHQGKVLRSFDLASVFHLNPLARFG 1117

Query: 861  --------------DIIISGRIDQISIS-----QQNIFIFEYKTHHHVPQEIE------- 894
                             ++G ID +        +   ++ ++K++    ++ E       
Sbjct: 1118 LPYAEMITGLNVCSRGFLTGSIDLVFTDSEESLEARWWVADWKSNWIGRRDPEGQAVACG 1177

Query: 895  ------------HIPYTHIAQLSIYEKILKD 913
                         + + +  Q  +Y   L  
Sbjct: 1178 PLHYDDSAMEQQMLLHHYPLQAHLYLVALHR 1208


>gi|255321197|ref|ZP_05362363.1| superfamily I DNA and RNA helicase [Acinetobacter radioresistens
           SK82]
 gi|262380117|ref|ZP_06073272.1| ATP-dependent DNA helicase PcrA [Acinetobacter radioresistens
           SH164]
 gi|255301751|gb|EET81002.1| superfamily I DNA and RNA helicase [Acinetobacter radioresistens
           SK82]
 gi|262298311|gb|EEY86225.1| ATP-dependent DNA helicase PcrA [Acinetobacter radioresistens
           SH164]
          Length = 659

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/540 (15%), Positives = 177/540 (32%), Gaps = 121/540 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   YE  K++   LD++D++      L+  +       ++      +L+DE+QDT+ 
Sbjct: 172 AELMQAYERRKRERNFLDYDDILAIVAVHLQHSEALVNWVTRLCS---VLLVDEMQDTNP 228

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +QW +++ L                LF VGD+ QSIY F GA+ + +   K         
Sbjct: 229 LQWALLQPLVGKIK-----------LFCVGDDAQSIYGFRGADFENIHHFKERVP----- 272

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 ++ L  ++RST +IL + + +                  +H  +  G+    QL
Sbjct: 273 ---DAEVLNLDFNYRSTQEILDLSNWLLDKSP---------LHYDKHLIAARGRGIKPQL 320

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                   +                          A  IA    ++I         +   
Sbjct: 321 HLFSNEFEE--------------------------ANWIA---QDLI-------KRQYTG 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            Q  + ++LVR       +         +  I         L +   +KD++++ R + +
Sbjct: 345 AQWYEHMILVRSSFTARHLEGAL----INANIPYKFVGGVKLLESAHVKDMLSMLRVVAN 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV-----I 485
            +DD++++  L +      +    K+  +  +   +    ++    G    + +     +
Sbjct: 401 PQDDIAWMRFL-TLWNGVGDVGASKLAHELIQLSDIDMRCERLEQHGRVALKAILMMKQL 459

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             +   + +    +       +           +    E    L +F +   +  +   S
Sbjct: 460 DVLQHEVEVCISLAVEALSEQLED---------NYKNKEWSRRLKDF-DLVKQLARKHNS 509

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               L   + +     +   S + + V ++T+H+AKG E  V ++       + H     
Sbjct: 510 LAGFLEEYVLEPISVSEVERSTDQDLVTLITIHSAKGAEQKVCYVPHVSPSQYPH----- 564

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                                  EE  R+LYV +TRA D+LI+ 
Sbjct: 565 -----------------------------ARAQGDFDQVEEERRVLYVALTRAQDELILT 595


>gi|262203379|ref|YP_003274587.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
 gi|262086726|gb|ACY22694.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
          Length = 1129

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 122/1013 (12%), Positives = 274/1013 (27%), Gaps = 154/1013 (15%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +   G +L E                 +  +      + TG+   +   + L    +   
Sbjct: 120  RRALGGALREPLVRTVHSYAFAILRLQASAHNNPPPRLITGSEQDVVLRELLAGDIEDGA 179

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                 + L     T  F              +  L++ + ++ +      +     +  +
Sbjct: 180  GY-WPAHLRPALGTDGF--------------AQALRDLMMRAAERGAGPEELAALGRRHR 224

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVL------------DFEDLIINTNDLLKKRDVSAWI 169
                    A    A YE+       +            D  +L+ +             +
Sbjct: 225  RPE--WVAAARAYAQYEQNMLLRGAVGLEAPGASAPAVDAAELVGSALSAFATDPE---L 279

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                   I H+L+D+ Q       ++++ +           +   +     D  QS++ F
Sbjct: 280  LIAQRARIRHLLVDDAQHLDPQAAQLVKLI----------GTGTTSTLIAADTDQSVFGF 329

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA+P+                      I L  +FRS A I    ++V  +  +    + 
Sbjct: 330  RGADPRFADDL---------AEPGSDRDILLDTNFRSEAQI----ERVGRVLASRLPGAR 376

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                      S     G VQ+     S  ++            FD +P    A       
Sbjct: 377  PHPYPQAPAESPATGAGGVQVRVFGSSAKEATAVADLLRRAHLFDGVPWSRMAV------ 430

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                  ++ + ++     +R  ++  + +                 L    ++ V     
Sbjct: 431  ------IVRSVSLALPPLRRAFRSAGVPLTTPASGLPLHRQRAVVALMLVLRV-VAARTT 483

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF--------NFSEDDIFKICTQRH 461
                D   I+D  AL    +   D  +   + +               +D +  + +   
Sbjct: 484  PAQADDFDIEDAAALLSGPIGAADPGAMRRLRRGVRRSSEKRGDDGAQQDSLTALRSAIL 543

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISR 520
            +      Y +   +   +    V+  +     +        +       A    +++ + 
Sbjct: 544  DPLLAARYREDLTDAERAPLDRVLDVVAAAEKVHTAGRGLEETLWAGWQATGLERRWAAS 603

Query: 521  ------FGNEVIDVLDE----FLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANH 569
                   G +    LD     F       +    +     +  L +   P   R  +A  
Sbjct: 604  AVRGGPGGEQADRDLDAVMAMFEAAANFADTLPAAGPAGFVHYLGQLQIPRDSRTATAAS 663

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            + V +++ H A G E  VV +      ++     +   +      D    +         
Sbjct: 664  DSVTVLSAHAAVGREWDVVAVAGVLDGLWPSLRSRGSVLATGQLVDLLDGV--------- 714

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
            +  +        +   +  RLL V  TRA  +L++          +++   +   + D+ 
Sbjct: 715  DPDAVDKLARPAAAIADERRLLLVACTRARRRLLVTAV--EDGSGEASPSRFIGEIADAL 772

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ------------ 737
                +                  +     P      R      + +              
Sbjct: 773  AGSTQDADADTPAPEELPLDPGVDRVLSLPSLVATLRSVVTAGVGEMPDERTMAAARLLA 832

Query: 738  ---------KIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSDNQT- 779
                       P+  +       + P         +L+PS +D   + +L  LL  N   
Sbjct: 833  RLADADVPGAHPRDWYGLAAPSSDAPLWTPDDGAVVLSPSNVDALTRCSLRWLLERNGGR 892

Query: 780  ------FNRGLIIHKLLQ----VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                     G ++H L+Q     +      +    I       A  + A+E +     + 
Sbjct: 893  DGDGTPALTGSLVHTLVQAVAGELDPTEVTEALRAIWDRVDTGAGWYSARELERAESMLV 952

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKD--IIISGRIDQISISQ-QNIFIFEYKTH 886
               E   ++ +   +   E++V   I     D  + + GR+D++         + + KT 
Sbjct: 953  NFREWLRISRSDLDEVGVELAVDATIPATPDDPAVRLRGRMDRLERDGAGRPVVVDVKTA 1012

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILK---------DSYPNKSLVCLLIYVSEP 930
                 + +       AQL+ Y+  L               +     L+YVS  
Sbjct: 1013 KTPISKADAQD---HAQLAAYQVALAHGGLTGADDAVVSAEPGGARLVYVSSA 1062


>gi|291520300|emb|CBK75521.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens
           16/4]
          Length = 616

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 87/541 (16%), Positives = 169/541 (31%), Gaps = 111/541 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y +  K N ++D++D ++    +LK   +   +      +  +I +DE QDTS IQ
Sbjct: 179 IYEKYNDYLKSNSLMDYDDQMVYAYKILKGSQI---VLKAFQDKYQYICVDEAQDTSKIQ 235

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +I  L            +   LF VGDE QSIY F  A P  +L  ++          
Sbjct: 236 HMIISLLAG----------TKGNLFMVGDEDQSIYGFRAAYPDALLNFEKE--------H 277

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ +  ++RS  +I+   D      ++                          +  
Sbjct: 278 TGAKVLVMDKNYRSNGNIVKAADSFIQHNKDRHKKH---------------------ICP 316

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
               Q D      +      +     ++     A                          
Sbjct: 317 IKSDQSDINILNIERDKQYNYLKEVAKNHIGRTA-------------------------- 350

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                VL R  +    +  +    +  Y I    N       +  + D++ + RF     
Sbjct: 351 -----VLYRDNESIIPLVDILERDRIPYNIK---NMDMTFFSNRVVLDIVNILRFAYVPM 402

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D+  F+ +        S+    ++C +     T      +          +         
Sbjct: 403 DEEIFMKIYFKLQSYISKSAANEMCMEAEIHHTGILDAAEMVKLNPYVLGNCRSLRTHFK 462

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
           ++A   SP+     I       +   +         +D    F L+        +   ++
Sbjct: 463 NMANE-SPYKAINRIENYMGYGEYLANN-------NIDANKIFILKMLAKKEKDIPGFLN 514

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            L      +     A    + + T+H++KGLE   V+L+D+ + VF +K ++ +      
Sbjct: 515 RLTDLRQILLEKEPAESGSIILSTIHSSKGLEYDSVYLIDSINGVFPNKVVRNVEKAT-- 572

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                      +K   EE  R+ YVG+TRA D L + K+ +  +
Sbjct: 573 -------------------------AQEKKDYEEERRIFYVGITRAKDNLTVFKYKDKPS 607

Query: 673 E 673
            
Sbjct: 608 A 608


>gi|332179303|gb|AEE14992.1| UvrD/REP helicase [Thermodesulfobium narugense DSM 14796]
          Length = 610

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 97/546 (17%), Positives = 176/546 (32%), Gaps = 131/546 (23%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K + + YE  KK+   LDF+DL++     +K  + S           + +L+DE QDT+ 
Sbjct: 171 KKIISLYELNKKERNYLDFDDLLMYGLLAIKTLEKSP---------FDEVLVDEFQDTNQ 221

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ E++    +              + AVGD+ QSIYSF GA  + +    +        
Sbjct: 222 IQAEMLYYFYDL----------GSRISAVGDDAQSIYSFRGAYYENMFNFIKRL------ 265

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST  IL + + +     ++      +   ++              
Sbjct: 266 ---DAEKIILSSNYRSTQQILDIANSIIQSSYSSIKKELVANVRLK-------------- 308

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                        P+    +  ++           AR +A  +                 
Sbjct: 309 ---------ENVKPKLVIVSDDWEE----------ARYVAREMQKFGEKGLK-------- 341

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                +  L R       +        N   I         LT+    KD M+  R  ++
Sbjct: 342 -----VAALYRAAYIGRNLESQL----NSMGIKYSFYGGQKLTESAHAKDFMSFLRVFVN 392

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            +D+++ + +LK       E    KI       + + + + K     + +       + +
Sbjct: 393 PKDEIALIRILK-MFPGIGEKKAEKIKDAVISGDNLKKALSKE--KNLEELNIFFDKLFK 449

Query: 491 LIHIAQFCSPHDFFTLILG-AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           +         HD   L+    K    +       E  + L +F++ +   +         
Sbjct: 450 I------TDWHDLLELVFDFYKDIMNRLYPENYEEREEDLIKFMDMSSNYDN-------- 495

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L+  LE +          ++N V + T+H+AKGLE  VVFL+     V+ H         
Sbjct: 496 LVEYLEAFTLDPVEKSEFDNNNVILSTIHSAKGLEFDVVFLLSVIESVYPHFR------- 548

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                              EE  RL YV +TRA  +LI     +
Sbjct: 549 ----------------------------AQSTDEIEEERRLFYVAITRAKQRLIFTFPRH 580

Query: 670 TSNEKK 675
           +   + 
Sbjct: 581 SKKSRG 586


>gi|256830236|ref|YP_003158964.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028]
 gi|256579412|gb|ACU90548.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028]
          Length = 724

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 104/628 (16%), Positives = 184/628 (29%), Gaps = 126/628 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + L   YE  K++  +LD++DL+     LL +      +R  +   I+HI++DE QDT+
Sbjct: 176 LRRLLEEYERIKQECGLLDYDDLLFLLERLLTEHP---QVREAVTSSISHIMVDEYQDTN 232

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L+Q  ++  LT+          +   + AVGD+ QSIY+F GA  K +L   +       
Sbjct: 233 LVQARLVGLLTKPG-------DTSPNVMAVGDDAQSIYAFRGANVKNILDFPKTFP---- 281

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I+L  ++RST  IL + + +             S         R        
Sbjct: 282 ----GTKLIKLEQNYRSTQPILELTNAILDGFREKFAKRLFSE--------RTDSRLPEH 329

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                              S    AR +A  +  +            R
Sbjct: 330 VLPF---------------------------SDRSQARLVAAKVVEL-----------SR 351

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 I VL R    +  +        N   +          ++   IKD++A  R   
Sbjct: 352 TYALDQIAVLFRAGYQSYHVEVEL----NKIGLGFRKYGGIKFSEAAHIKDVLACLRLAQ 407

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +  D  ++  +L +           KI       +   +   K           +++ + 
Sbjct: 408 NTSDIPAWQRILGNVP-GIGPKSAQKIHHAAMIND---QAFIKAQRAKRPALDDLLRVLD 463

Query: 490 ELIHIAQFCSPHDFFTLILGAK-KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            L        P    T +L       ++            L+E +  +L  +        
Sbjct: 464 TLRTQV--MRPSTAITFVLEYYLPVLREKFPDDYPRREAGLEELVQISLSYDDT------ 515

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              S L         A       V + TVH+AKGLE   V ++D     F  +H      
Sbjct: 516 --ASFLGDLSLDSPDAEEERGQAVTLSTVHSAKGLEWDAVLVIDLVEDRFPSRHAMN--- 570

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                               EE  RL+YV  TRA D LI+    
Sbjct: 571 -------------------------------DSDDFEEERRLMYVACTRARDSLILFSPE 599

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                         ++   +        +    + +++               TP    E
Sbjct: 600 ---------ALYSRELSATTPARVSPFLQDIPAHLLSRYREQFTGGVGLQTLPTPRRTSE 650

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYI 756
           +    +      +   +P     +    
Sbjct: 651 STSAHISRPGPGEDFEAPAPRPASSTQT 678


>gi|290242989|ref|YP_003494659.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288945494|gb|ADC73192.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 704

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 99/683 (14%), Positives = 190/683 (27%), Gaps = 124/683 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILK-KAQTLQQASQTQCIEERF 66
           +  E Y  +   L       +  I  + S   +       + + ++          ++  
Sbjct: 61  AAREMYARLRDRLDTQDRKALPTIENFHSFGWKLLQSNPTRCQRKSGVSLMDANDQKKEL 120

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK---LKKSQDEFIKIRDRFNTYKMFKST 123
             L           ++++  +++      L  +   L                  M   T
Sbjct: 121 RRLHKDL--ADDAFREDVPVKKLMTVHDVLSNEGIILGDQYARTGDENPERRQRIMALLT 178

Query: 124 -----LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                 A       +   YEE K+    +DF DL+      L           K+++   
Sbjct: 179 AQGIRRAHWGRLNDILRRYEENKRMANTVDFGDLVALPAAGLS---AYPEWAAKLEERFT 235

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HI +DE QDT+ IQ+ ++R             SS   +  VGD+ Q IY + GA P  + 
Sbjct: 236 HIAVDEAQDTNRIQYAMLRLF-----------SSHNNVIMVGDDDQCIYEWRGAAPSNLR 284

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             +            + +I+ L  ++RST  I++   +  +  +     S          
Sbjct: 285 TFRDE---------TEAAIVRLERNYRSTPSIVSAAARHIACNQTRIEKS---------- 325

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                               + + +        + D +        +A  IA  I   I 
Sbjct: 326 -----------------PYAEGRADGDPPDGQQHPDGVA-------MANAIAQDIREAID 361

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
           +           I  K I +L R  K   ++            I         +      
Sbjct: 362 SG----------ISPKRIAILYRVNKIARVLEPALIA----RGIPYHIAQGIDVFQTPEA 407

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           + LM   R + + +D ++    L   +    E  +  +       +      ++      
Sbjct: 408 QLLMGAVRLVQNPQDSMAATK-LAQLVKGLGERSLNDMIGYSVIHDLPILECRQHVKLSK 466

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILG-AKKGRQQFISRFGNEVIDV--------- 528
             F    + + ++I       P       L     G Q  +                   
Sbjct: 467 PAFAAA-ERLSQMIDGLAQWPPLYLAEWALDPEMGGFQDTLKELSKTADKPKTMYERRLT 525

Query: 529 ----LDEFLN---FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
               ++E +     T    +      +    E+ Q          A  + V + TV   K
Sbjct: 526 TIMSIEEAIQGRFGTSDQGKADAEYSRSEQWEIVQELALAAPDEEAEQDAVTVATVFRVK 585

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   V +      +   +       M   ++D                          
Sbjct: 586 GLEYHTVHIAGMSDGLMPMRRSSDKPPMFDEDED-----------------------EAA 622

Query: 642 STQEEYNRLLYVGMTRASDQLII 664
              EE  RL YV  TRA ++L++
Sbjct: 623 QNVEEERRLSYVAATRARERLVV 645


>gi|87302318|ref|ZP_01085143.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701]
 gi|87283243|gb|EAQ75199.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701]
          Length = 1285

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 116/1039 (11%), Positives = 258/1039 (24%), Gaps = 197/1039 (18%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMET------------GNPTILKKAQTLQQASQTQCIEER 65
            +    L   Q   + + +  +                     K+AQ L    Q Q     
Sbjct: 233  QRFQALWEQQGEALEQALCAAAAERKQAGLKSKGPYSAKPRHKRAQLLSAWLQHQPCPGS 292

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK--IRDRFNTYKMFKST 123
            ++ L              I               L+  + +  +  + +         + 
Sbjct: 293  YTELLE-------EKTSWIPDYFHPGPISQAAAALEGPRPKLPQPRLLEAAAALVDGPAE 345

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                    +  A     +++   + + DL++   D          +   + Q     LID
Sbjct: 346  AVLGHFCHWARAELARRRQRGGRMSYGDLLVG-LDPGGDGSQRPGLIEALSQRYGAALID 404

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QDT  +QW ++                   L  VGD KQ+IY F G +          
Sbjct: 405  EFQDTDPLQWRILHR-----AFAAAAAQPRHLLVLVGDPKQAIYRFRGGDLDTYR----- 454

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                 T +    +   L  +FRS+  +L  ++++ +      GL          +++R  
Sbjct: 455  -----TASSTAATSHRLARNFRSSPPLLEALNRLMA-----PGLPRSQLPVPPLQAARPE 504

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G   +                 +      S  +  +     R  A  +  ++    + 
Sbjct: 505  -GGEPLILPAGQHPLQLLWLGSDRAAAEALPSRGELENRVGD-RVAALVLDLLLRGWRMG 562

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                 R +Q  D+ +LV + +         R       +      +  +        L  
Sbjct: 563  EGEGSRPLQPSDLCLLVDRHQQA----EDLREALERRGLPSRLLSQGDVFAGEGAALLQR 618

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            L   +           +  SPL  +S   +    +Q  +  +                  
Sbjct: 619  LLDALAEPGSGPRLRLLAASPLLGWSPQQLAAAGSQEWDRLSGQLARLAERLPDDGLLAT 678

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
            + + +                +  L     + ++++        V +      L    ++
Sbjct: 679  LGRLLR---------------SEELARLSLQGRWLADLQQCAELVQERLHQQRLGAAASA 723

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV----DTGSQVFS 599
                +  +   E  P   +    A  + V ++TVH +KGLE PVV         GS    
Sbjct: 724  DWLRRRRLHPPETAPENQQPHSDAVASAVGVVTVHRSKGLEFPVVICPYFWQGVGSTNRR 783

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                      P     P + + + Q         +  +  + +   E  RL YV +TRA 
Sbjct: 784  GGRGIGRRWTPPQASGPQLDVHLDQRW---GPGQEAAEQEQAALTAERERLAYVALTRAR 840

Query: 660  DQLII-CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            + L++    +            + D    +   D+ +   +      +      E     
Sbjct: 841  ELLVLGFGPARGQGSNPLIPWLFSDQPLPALEADDDIDAGRSDQEWLEHLEGEIERRALP 900

Query: 719  PENTPLEREETIKQLMDEQKI-----------------PKKLFSPIKNDINEPYILNPST 761
                  + E+   +                          +              L P  
Sbjct: 901  ITLISGDPEQPAARRWQVPAEAGDLRTGPVPRWSLLSGWGRSSYSSWTQGAHGEPLAPEA 960

Query: 762  IDTKGKTNLESLLSD--------------------------------NQTFNRGLIIHKL 789
            I+   +T+     +                                  +    G  +H++
Sbjct: 961  IEEGRETDGFDRTASDADGPGPQATDPVSPKQGPETWGGRNGPLAMFPRGAAAGDCLHRI 1020

Query: 790  LQVIFTLPEHKR---KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--------MT 838
            L+ +           +  +     +       +     L  + +L   PM        + 
Sbjct: 1021 LERVDHRQPGDDPLHRELVERELERAG--LDLEHAPATLQFLEQLRHTPMGGALGEVCLA 1078

Query: 839  TAMSCDSYSEVSVSGKINCPKK-------------------------------------- 860
                     E+     +                                           
Sbjct: 1079 QLDPRRQLREMPFDLPLALGADASAGRALVRAQGLAEVFSRHPEGSVSGTYPQRLAELNV 1138

Query: 861  --DIIISGRIDQISISQQ-----NIFIFEYKTHHHVPQEIEHIP---------------- 897
                 ++G ID +  +         ++ ++K++    ++ +  P                
Sbjct: 1139 ASRGFLTGSIDLVFTAPGGDGQERWWVADWKSNWLGQRDPQGQPVACGPLDYGRDEMAAV 1198

Query: 898  ---YTHIAQLSIYEKILKD 913
               + +  Q  +Y   L  
Sbjct: 1199 MESHHYPLQAHLYLVALHR 1217


>gi|83589346|ref|YP_429355.1| DNA helicase/exodeoxyribonuclease V, subunit A [Moorella
           thermoacetica ATCC 39073]
 gi|123525008|sp|Q2RL77|ADDA_MOOTA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName:
           Full=ATP-dependent helicase/nuclease AddA
 gi|83572260|gb|ABC18812.1| DNA helicase/exodeoxyribonuclease V, subunit A [Moorella
           thermoacetica ATCC 39073]
          Length = 1405

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/512 (15%), Positives = 157/512 (30%), Gaps = 73/512 (14%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
            + +  W L   + +                  ++   L +       EE  + L++   
Sbjct: 228 ELQEAAWYLEQARQAAAAPGGPAVYLDNLENEKEQVTRLLEEVGDLPWEELNAKLAAVHF 287

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF------IKIRDRFNTYKMFKSTLASLT 128
            +    +   +   + +++  L+ + +             +   R    +  +     + 
Sbjct: 288 GRLKAARGEDVDPVLKERAGKLRNQARDLLYALKEDLCRDEAAVRAELERSGELVATLVG 347

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA------WIRYKIDQEINHILI 182
           L +  +A   EAK +  ++DF DL      +L              +  ++ Q    +L+
Sbjct: 348 LVRRFDAALREAKGRRNLIDFSDLEHLCLRVLLDEGAGPGRLQPSDVALELRQRFAEVLV 407

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD + +Q  ++  ++               LF VGD KQSIY F  A P   L + R
Sbjct: 408 DEYQDINTVQDAILALVSRQDVA-------ENNLFMVGDVKQSIYRFRLANPDLFLAKYR 460

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSS 300
                    G     I L  +FRS   ++  V+ +F    +     L  D+   +  R+ 
Sbjct: 461 QYP---EGEGGPNRRILLKANFRSRQGVVDGVNFIFRQVFSPLVGELEYDAAAALVGRAG 517

Query: 301 RIGQVGT----VQLWEQVVSQHDSQCNPQQESWTSYFDS--------------------- 335
                      V+++ Q            +        +                     
Sbjct: 518 YPENPAAATPAVEVYLQEGKVAAGTGAGGRTDLPEAVGAGKGGKISGGAGYGETLSGYGA 577

Query: 336 -----------LPQESSASILARRIAYTISNMIG----------TDTIFSNGKKRVIQAK 374
                      L   ++    A  +A  I  M+                   + R +  +
Sbjct: 578 ASPGGETGAPDLEDLTALEREALLVARRIRRMVRGTPERPGPEFQVWDQEKKEYRDLTYR 637

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           DI++L+R    T     +       Y I    +          I+ +++L R I +   D
Sbjct: 638 DIVILLRA---TRDRAPVFLEALKQYGIPAYADLGSGYFAATEIETILSLLRVIDNPHQD 694

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
           +    +L+SP+   S  D+ +I       +  
Sbjct: 695 IPLAAVLRSPIVGLSAGDLARIRLAAPGEDFF 726



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 73/250 (29%), Gaps = 9/250 (3%)

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRN 539
             +  +  +     +A+     D    +       +       G +    L   L+   + 
Sbjct: 807  LREFLARLERWRTLARRQPLGDVIWQLYRETGYLEFVGGLPGGAQRQANLRALLDRARQF 866

Query: 540  EQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            E  +   L   +  +E     +      RA   N + VR+M++H AKGLE PVV +   G
Sbjct: 867  EGFARHGLFRFLRFIERLQQNEGDLGTARALGENEDVVRVMSIHRAKGLEFPVVIVAGLG 926

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                         +   L   P         K            L+     E  R+LYV 
Sbjct: 927  KGFNLRDLSGDFLLHGRLGLVPLYLDAAAGIKYPTLPYLATGHRLRLEALSEELRILYVA 986

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            +TRA ++LI+        +       W   ++        V   +  N ++         
Sbjct: 987  LTRAREKLILAGTV---RDLPRQAENWCASLFLPGEQLPPVLTSRAGNPLDWLLPALARH 1043

Query: 715  STHHPENTPL 724
                      
Sbjct: 1044 PDAAAIRDLA 1053



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/285 (9%), Positives = 77/285 (27%), Gaps = 29/285 (10%)

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
            +     T+ +  +   +                 +   +      W+  E +       P
Sbjct: 1125 VTPVQETAGKTVAPPGSNIAEAGVEPGVSPPAGAVSPQDETGPT-WLQQEVARRLAWTYP 1183

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
             +    +   +    + ++              L P       +              RG
Sbjct: 1184 RQPLTALPVKLTVTDLKRRF----DVFNEGETPLRPGENTFTRRPAFLQSHQGLTAAERG 1239

Query: 784  LIIHKLLQVIFTLPE---HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
               H +LQ +              +     +   L P +     + +I      P+    
Sbjct: 1240 TATHLVLQHVDLSRPVTGESLAGLLQEMVEREI-LTPEQAAAVDIRAIVTFFAAPLGKRL 1298

Query: 841  MS--CDSYSEVSVSGKINC------------PKKDIIISGRIDQISISQQNIFIFEYKTH 886
            ++       E+  S  +                + I++ G ID +   +    + ++KT 
Sbjct: 1299 LARWEQVKRELPFSLAVPAVELYPGLPAEAAAGEIILVQGIIDCLVEEEDGFLLLDFKTG 1358

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL-LIYVSEP 930
               P  +      +  Q+  Y + ++  + N+++  + L ++   
Sbjct: 1359 RIPPDPLA----AYREQVRFYTRAVETIF-NRNVKEVHLYFLDGG 1398


>gi|239626681|ref|ZP_04669712.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516827|gb|EEQ56693.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1121

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/551 (16%), Positives = 159/551 (28%), Gaps = 143/551 (25%)

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            TL +   + Y E      ++DF+DL++   +       S        Q   ++L+DE QD
Sbjct: 676  TLTEEAFSRYNELLASRNLMDFDDLLLKVLE----LLGSEQKLELRRQHFFYLLVDEFQD 731

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
             S +Q+ +I++           +   + LF +GD  QSIY F G++     +      + 
Sbjct: 732  ISPVQYRLIKAW----------NKGGKELFLIGDPDQSIYGFRGSQSNCFDQLCSDYSQ- 780

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     ++ L  ++RST +IL+    + S      G   + T  + H +        
Sbjct: 781  -------ACVLRLKPNYRSTPEILSAALPLISHNP---GEPRELTPMLGHGA-----PVR 825

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG- 366
            V                                S+   A  IA  I +M+G   +     
Sbjct: 826  V----------------------------ATAESSLSEAIFIAKEIGHMVGGIDMLDAHA 857

Query: 367  -----KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                         DI +L R      L+    R       I  V   R    +  +++  
Sbjct: 858  NTSAMTDTPRSFSDIAILYRTNHQARLLEQCLR----KEGIPYVVAGREDYLEEPSVQGT 913

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            +     I S                                 E ++ +        +   
Sbjct: 914  ICFFHGIAS----------------------------SLPGNEEIWSHTTSLCRKLLGPC 945

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                    +     +   P                ++          +D FL   +    
Sbjct: 946  HDYEALKAQFTKRLKREKPWKLLE----------DWMKILNMTDNRSMDTFL--CMSYFH 993

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
             +   +   ++  +    T     S   + V +MT H +KGLE P VFL      +   K
Sbjct: 994  KTMEDMLTTLTFGQGNDVTRSGQDSCPSSAVTLMTFHASKGLEFPTVFLYGLKQGLMPLK 1053

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                       EE  RLLYV MTRA ++
Sbjct: 1054 SGSGPV-----------------------------------NLEEERRLLYVAMTRAKEE 1078

Query: 662  LIICKHSNTSN 672
            LII    + S+
Sbjct: 1079 LIITTSESPSS 1089


>gi|157415048|ref|YP_001482304.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386012|gb|ABV52327.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747689|gb|ADN90959.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni M1]
 gi|315931191|gb|EFV10163.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 676

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 100/615 (16%), Positives = 200/615 (32%), Gaps = 180/615 (29%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   +DF DL+IN  +LLK+             E + IL+DE QD
Sbjct: 168 EIYEDILKEYDNEKKRFNYVDFNDLLINLKELLKEE----------KYEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNTLQSSLIEAFHS------------KSLFCVGDYDQSIYAFNGADINIIGGFKDRF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----KDAKIFSLNKNYRSSRSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V+++D    P   ++   FD                  I+ MI          
Sbjct: 298 ----ELIVTRNDEFKAPSLLTFEELFDQ--------------YQNIAKMI---------L 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       +    R       I+ V        + L +K   ++   
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGVEVALRE----QGIASVRKGSGSFFESLEVKAFSSMLAL 386

Query: 428 ILSQEDDLSFVCM--------------LKSPLFNFSEDDIFK------------ICTQRH 461
           +++ +D ++F+ +              +   L      ++ K               +R+
Sbjct: 387 VVNPKDIMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRN 446

Query: 462 ETETVYEYIQKFANCGISKF-------------------QHVIKYIHELIHIAQFCSPHD 502
               ++  +++ A+    KF                      ++ I+  +  A       
Sbjct: 447 YQLGLFADLEELASETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSL 506

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ---------------NSYSSL 547
               ++      ++       +        ++   ++E                 +YS +
Sbjct: 507 TLVNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI 566

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + L      +     ++   V +++VH +KGLE  +VF++D     F ++ +  M 
Sbjct: 567 YKYYNFLTLGASEM-----SSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMG 621

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                              + EE  RL YV +TRA + L +   
Sbjct: 622 G----------------------------------SLEEERRLFYVAVTRAKNILYLSYA 647

Query: 668 SNTSNEKKSNQRTWY 682
               N+K S   + +
Sbjct: 648 KYDKNKKTSFAPSRF 662


>gi|308177922|ref|YP_003917328.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117]
 gi|307745385|emb|CBT76357.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117]
          Length = 1070

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 121/1015 (11%), Positives = 272/1015 (26%), Gaps = 166/1015 (16%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            +++        ++       W    F        +  +   G    L++A  L    +  
Sbjct: 72   IRDELSRRAQRTFTEPVVRTWSSYAFD------LIRRARVEGLLPQLERAPRLLSGPEQD 125

Query: 61   CIEERFSLLSSFFLTQKFTPQKNII----TQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
             +        S  LT+       +     T+   K+  +  +++ +   E   I D    
Sbjct: 126  TLIGHLLEGHSAGLTEGPQWPTELELAVETRGFRKEIREFFDRVSELGLEPADIADLGQQ 185

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKK--KNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
             K  +        A      Y +          D   LI     +L++        ++  
Sbjct: 186  AKRPE-----WHAAALFYQEYRDLLDLGSAEAFDPAGLITRAAQILEEN---QGFLHEEQ 237

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
              +  IL+D++Q+ +L Q  ++  L              R + A       +  F GA  
Sbjct: 238  DRMALILVDDLQEATLSQHRLLSLL-----------GKDRAMVAFAAPDSVVQGFRGART 286

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
              + R  +           + S +EL    R +  I     ++ S    A GL   +   
Sbjct: 287  DELHRFAQNY-----AHTTEASFMELTGGLRMSPQITEAWKRIVSRVPLAAGLRGRTIEA 341

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            +             +L + +V ++ +                          R IA  I 
Sbjct: 342  LNTSEH--------ELCQALVFENSTLEE-----------------------RFIAQRIV 370

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++                  DI ++VR        +          ++            
Sbjct: 371  HL---------NLYENRSLADIAIVVRNGSQVRSFSRFLEGQGIGVQVPPAEIPLKDEGA 421

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY------- 467
               + DL+ L       +D L    +L S     +  +I +I     + E          
Sbjct: 422  VRPLLDLLDLAFSDSLTDDPLLMQNLLLSRYGMSTALEIRRIRQLLRQQEAEAGGRRSSQ 481

Query: 468  ---------EYIQKFANCGISKFQHVIKYIHELIHIAQ--FCSPHDFFTLILGAKKGRQQ 516
                       +           + ++     L         +P      +  A    + 
Sbjct: 482  ELLETCLREPALADKLGKPGFGLKRLLSMYGALQEELNSGTATPETALWAMWEASGRAKA 541

Query: 517  F---------ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH- 565
            +          +R  +  +D +        R  +Q   +S+++ I  +      +     
Sbjct: 542  WREEALGTGTAARRADHDLDAVLSLFQAAERFVDQLPGASVKQFIDHILHQDLPMDSLAT 601

Query: 566  -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             +A    V ++T   A G + PVVF+       + +  ++   +           +    
Sbjct: 602  RAAGGQTVTVLTTAAAAGKQWPVVFIPGLQEGSWPNLRLRGELL-------GSNALADAA 654

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                + + +    HL +  + +  R     ++RA DQLI     N  ++  S        
Sbjct: 655  EHGIDFLATRTPTHLVRQIRNDELRSFSNAVSRAQDQLICTAVDNEDSQPSSFLDLVEPP 714

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI-------------- 730
              +        +   L   + +    A +         P   +                 
Sbjct: 715  CPEGREPTAVPRIRSLPALVAELRSTAEKAKAASLGAVPAPADVEAHSLYQDAVHVLGRL 774

Query: 731  ---------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ--- 778
                             +     +      ++P  ++PS ++T  K+ L   +       
Sbjct: 775  AHAEQPVRGAHPSSWWGLSPVTTTEPVIPEDQPRRVSPSKVETLVKSPLNWFVQSAGGTA 834

Query: 779  ----TFNRGLIIHKLLQVIFTLPEHKRKNFIT-SYCTKNAKLWPAKEYKNLLLSITRLLE 833
                  + G +IH + +        + +  +   +           +          +L 
Sbjct: 835  AHDFAASLGTLIHSIAEEHPEASGSEYERILEQRWPELEKLENWEGQRD--FDRANGMLR 892

Query: 834  NPM-----MTTAMSCDSYSEVSVSGKINCPKKDII-ISGRIDQISIS-QQNIFIFEYKTH 886
                    M          E+    ++       I + G ID++       + + + KT 
Sbjct: 893  KFAAYCVTMRQEGRELVAREMPFQVEVPAADGSHIQLRGIIDRVEADANGKVRVVDLKTG 952

Query: 887  HHVPQEIEHIPYTHIAQLSIYEKILK----------DSYPNKSLVCLLIYVSEPK 931
               P +   +      QL +Y+  ++             P++     L+YV    
Sbjct: 953  SSAPTKEATLE---HLQLGVYQTAIQLGALQEHEETAGLPDEPAGASLVYVGTNT 1004


>gi|184156771|ref|YP_001845110.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii ACICU]
 gi|294841925|ref|ZP_06786608.1| putative ATP-dependent DNA helicase [Acinetobacter sp. 6014059]
 gi|183208365|gb|ACC55763.1| Superfamily I DNA and RNA helicase [Acinetobacter baumannii ACICU]
 gi|322506663|gb|ADX02117.1| ATP-dependent DNA helicase [Acinetobacter baumannii 1656-2]
 gi|323516538|gb|ADX90919.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 659

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 105/666 (15%), Positives = 214/666 (32%), Gaps = 143/666 (21%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 65  AASEIVARVEQHVGAQAKGLRASTFHTFCMYLLRRN-----PQAFGLTQFSIIDRDDQLL 119

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +        K        
Sbjct: 120 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQSKLSEAL-----LKQLPEAYEY 167

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-WIRYKIDQEINHILIDEV 185
            +    L   YE+ K++   LD++D++      L+  +    W+          +L+DE+
Sbjct: 168 KSQIAELMKTYEQRKRERNFLDYDDILSIVAVHLQNSEALTNWVAGFCQA----LLVDEM 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 224 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I  L L++RST +IL + + + +                +   +  G+ 
Sbjct: 273 --------DAVIHTLDLNYRSTQEILDLSNWLLAHSP---------IDYQKQLQAHRGKG 315

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              QL        +                          A  IA  +            
Sbjct: 316 QKPQLHLFGNEFEE--------------------------ANWIAQDLIERHQQG----- 344

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D +VLVR       +       +    I         L +   +KD+++L 
Sbjct: 345 -----ANWYDHMVLVRSGYSARYLEGAFIAAE----IPYRFIGGVKLLESAHVKDVLSLL 395

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV- 484
           R + + +DDL+++  L +      +    K+  +      V E  ++    G    Q + 
Sbjct: 396 RIVSNPQDDLAWMRFL-TLWDGIGDVGASKLAQELMSISEVEERCERLERHGKVPLQAIL 454

Query: 485 ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
               +  + + +  +   +       +       Q + ++  +      D       ++ 
Sbjct: 455 ILKQLDVLQQHVEASIGLALDALSEQL------EQNYKTKDWSRRARDFDLVKQLARKH- 507

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               +SL E + E    P +I +   + + + V ++T+H+AKG E  V ++         
Sbjct: 508 ----ASLGEFLEEYVLEPISISEIEKAGDDDLVTLITIHSAKGAEQKVCYVP-------- 555

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                         N              EE  R+LYV +TRA 
Sbjct: 556 --------------------------HVSPNQYPYARAQGDFDEVEEERRVLYVALTRAE 589

Query: 660 DQLIIC 665
           ++LI+ 
Sbjct: 590 NELILT 595


>gi|126179428|ref|YP_001047393.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
 gi|125862222|gb|ABN57411.1| UvrD/REP helicase [Methanoculleus marisnigri JR1]
          Length = 911

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 109/842 (12%), Positives = 226/842 (26%), Gaps = 170/842 (20%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE +  ++  L F  ++    + L+ R         + + + ++++DE QD +  Q 
Sbjct: 187 LRRYEASLDQHKRLTFNRMVQLAVENLQHRPE-------VAEHVKYLIVDEYQDINHAQD 239

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+IR +               ++F VGD +Q+IY + G++ +          +       
Sbjct: 240 ELIRLI-----------GLGGSIFVVGDPRQTIYQWRGSDEQYFEEFTTRYPEAV----- 283

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I +  + RST  ++   +            + +          R  Q G       
Sbjct: 284 ---TIHITENRRSTVAVIETAN--------GFSDTFEDQHYDHMDPVRREQGGA------ 326

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 L +  S       IA  I  ++  +             
Sbjct: 327 ---------------------YLAEMQSDITEVDWIADQIQALVREE---------KCSY 356

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            DI +L R    +               I  V   +  L     I  +  L  ++    +
Sbjct: 357 SDIALLFRSVSTSA---PPFIDEFRRRDIPFVVGGKVGLFRRPEILGIGQLFAWL---WE 410

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH-VIKYIHELI 492
           D  +     S L     +D+ +              ++      + +++  V+   ++  
Sbjct: 411 DGFWQQGKWSRLPALRGEDLLEEAVVNWNQGIPDLALEASDVLNLRRWKDSVLNSTYDNF 470

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE---------QNS 543
                          L     R   I          L  F       E         +N 
Sbjct: 471 SQVFGELLVLLGYHGLDPDDVRHAVIM-------ANLGRFNTLLTDYETAIMLGGRRRNW 523

Query: 544 YSSLQELISELEQYP----PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            + L+ L   L  Y                + V+++T+H +KGLE P+VF+     Q F 
Sbjct: 524 ETDLKGLCWYLNTYASSKYEEQTGDDIGGVDAVQLVTIHQSKGLEWPLVFVPCMVRQRFP 583

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
              + K                         +         +   E   +L+YV +TRA 
Sbjct: 584 SSMVGKGRTWL----------------ISPELFDVAKY---EGDLESERKLMYVALTRAK 624

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           D  ++   ++ +  +K       D+           +     +            +    
Sbjct: 625 DVAVVSYFTSMNGRRKGRSAFVGDIEDLPHVEPLSQRDTLPDHDYATGGAADELRTFSAG 684

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
           E     +     +L         L                                    
Sbjct: 685 EIVDYGKCGYFYRLRHIWGYEPGLT---------------------------------DY 711

Query: 780 FNRGLIIHKLLQVIFTL-------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
              G  +H  L+    L       P       +                + +  +    L
Sbjct: 712 LGYGQTLHFCLREAADLMKNEDLSPMIAVATAVDR--NFYMPFMTEGRMEKIKRAAKNHL 769

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
                      D      V  ++  P ++ I++G++D I      + + +YKT      +
Sbjct: 770 M--RFAEKYRDDMLRIREVETRVEFPVQNAIVAGKVDVILHDGDAVEVRDYKT-----SD 822

Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKV--FIIPQNKLNKAFAEIST 949
               P     Q+ +Y + L      +++    + ++ E  V    + +  +    A +  
Sbjct: 823 TATTPEDSALQVQLYTRGLCVL--GETVSRGSVAFLEEAAVDAVDVTEQAVAGTMARVEE 880

Query: 950 KI 951
            I
Sbjct: 881 DI 882


>gi|205356745|ref|ZP_03223505.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345384|gb|EDZ32027.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 676

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/615 (16%), Positives = 200/615 (32%), Gaps = 180/615 (29%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   +DF DL+IN  DLLK+             E + IL+DE QD
Sbjct: 168 EIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEE----------KYEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNTLQSSLIEAFHS------------KSLFCVGDYDQSIYAFNGADINIIGGFKDRF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----KDAKIFSLNKNYRSSRSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V+++D    P   ++   FD                  I+ MI          
Sbjct: 298 ----ELIVTRNDEFKAPSLLTFEELFDQ--------------YQNIAKMI---------L 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       +    R       I+ V        + L +K   ++   
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGVEVALRE----QGIASVRKGSGSFFESLEVKAFSSMLAL 386

Query: 428 ILSQEDDLSFVCM--------------LKSPLFNFSEDDIFK------------ICTQRH 461
           +++ +D ++F+ +              +   L      ++ K               +R+
Sbjct: 387 VVNPKDIMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRN 446

Query: 462 ETETVYEYIQKFANCGISKF-------------------QHVIKYIHELIHIAQFCSPHD 502
               ++  +++ A+    KF                      ++ I+  +  A       
Sbjct: 447 YQLGLFADLEELASETRFKFESEFDAHPILKLSKINDLCARNLEKIYLFLKKAMEIKHSL 506

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ---------------NSYSSL 547
               ++      ++       +        ++   ++E                 +YS +
Sbjct: 507 TLVNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI 566

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + L      +     ++   V +++VH +KGLE  +VF++D     F ++ +  M 
Sbjct: 567 YKYYNFLTLGASEM-----SSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMG 621

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                              + EE  RL YV +TRA + L +   
Sbjct: 622 G----------------------------------SLEEERRLFYVAVTRAKNILYLSYA 647

Query: 668 SNTSNEKKSNQRTWY 682
               N+K S   + +
Sbjct: 648 KYDKNKKTSFAPSRF 662


>gi|148926945|ref|ZP_01810622.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845029|gb|EDK22126.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 676

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/615 (16%), Positives = 200/615 (32%), Gaps = 180/615 (29%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   +DF DL+IN  DLLK+             E + IL+DE QD
Sbjct: 168 EIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEE----------KYEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNTLQSSLIEAFHS------------KSLFCVGDYDQSIYAFNGADINIIGGFKDRF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----KDAKIFSLNKNYRSSRSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V+++D    P   ++   FD                  I+ MI          
Sbjct: 298 ----ELIVTRNDEFKAPSLLTFEELFDQ--------------YQNIAKMI---------L 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       +    R       I+ V        + L +K   ++   
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGVEVALRE----QGIASVRKGSGSFFESLEVKAFSSMLAL 386

Query: 428 ILSQEDDLSFVCM--------------LKSPLFNFSEDDIFK------------ICTQRH 461
           +++ +D ++F+ +              +   L      ++ K               +R+
Sbjct: 387 VVNPKDIMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRN 446

Query: 462 ETETVYEYIQKFANCGISKF-------------------QHVIKYIHELIHIAQFCSPHD 502
               ++  +++ A+    KF                      ++ I+  +  A       
Sbjct: 447 YQLGLFADLEELASETRFKFESEFDAHPILKLLKINDLCARNLEKIYLFLKKAMEIKHSL 506

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ---------------NSYSSL 547
               ++      ++       +        ++   ++E                 +YS +
Sbjct: 507 TLVNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI 566

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + L      +     ++   V +++VH +KGLE  +VF++D     F ++ +  M 
Sbjct: 567 YKYYNFLTLGASEM-----SSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMG 621

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                              + EE  RL YV +TRA + L +   
Sbjct: 622 G----------------------------------SLEEERRLFYVAVTRAKNILYLSYA 647

Query: 668 SNTSNEKKSNQRTWY 682
               N+K S   + +
Sbjct: 648 KYDKNKKTSFAPSRF 662


>gi|57237622|ref|YP_178870.1| putative ATP-dependent DNA helicase [Campylobacter jejuni RM1221]
 gi|86153455|ref|ZP_01071659.1| atp-dependent helicase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|57166426|gb|AAW35205.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni RM1221]
 gi|85843181|gb|EAQ60392.1| atp-dependent helicase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|315058231|gb|ADT72560.1| ATP-dependent DNA helicase UvrD/PcrA/Rep, epsilon proteobacterial
           type 1 [Campylobacter jejuni subsp. jejuni S3]
          Length = 676

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/615 (16%), Positives = 200/615 (32%), Gaps = 180/615 (29%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   +DF DL+IN  DLLK+             E + IL+DE QD
Sbjct: 168 EIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEE----------KYEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNTLQSSLIEAFHS------------KSLFCVGDYDQSIYAFNGADINIIGGFKDRF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----KDAKIFSLNKNYRSSRSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V+++D    P   ++   FD                  I+ MI          
Sbjct: 298 ----ELIVTRNDEFKAPSLLTFEELFDQ--------------YQNIAKMI---------L 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       +    R       I+ V        + L +K   ++   
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGVEVALRE----QGIASVRKGSGSFFESLEVKAFSSMLAL 386

Query: 428 ILSQEDDLSFVCM--------------LKSPLFNFSEDDIFK------------ICTQRH 461
           +++ +D ++F+ +              +   L      ++ K               +R+
Sbjct: 387 VVNPKDIMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRN 446

Query: 462 ETETVYEYIQKFANCGISKF-------------------QHVIKYIHELIHIAQFCSPHD 502
               ++  +++ A+    KF                      ++ I+  +  A       
Sbjct: 447 YQLGLFADLEELASETRFKFESEFDAHPILKLSKINDLCARNLEKIYLFLKKAMEIKHSL 506

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ---------------NSYSSL 547
               ++      ++       +        ++   ++E                 +YS +
Sbjct: 507 TLVNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI 566

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + L      +     ++   V +++VH +KGLE  +VF++D     F ++ +  M 
Sbjct: 567 YKYYNFLTLGASEM-----SSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMG 621

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                              + EE  RL YV +TRA + L +   
Sbjct: 622 G----------------------------------SLEEERRLFYVAVTRAKNILYLSYA 647

Query: 668 SNTSNEKKSNQRTWY 682
               N+K S   + +
Sbjct: 648 KYDKNKKTSFAPSRF 662


>gi|86150141|ref|ZP_01068368.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|86152070|ref|ZP_01070282.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88597504|ref|ZP_01100738.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562405|ref|YP_002344184.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315124301|ref|YP_004066305.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85839257|gb|EAQ56519.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85840855|gb|EAQ58105.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88190096|gb|EAQ94071.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360111|emb|CAL34905.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284926023|gb|ADC28375.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315018023|gb|ADT66116.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315928295|gb|EFV07611.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 676

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/615 (16%), Positives = 200/615 (32%), Gaps = 180/615 (29%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   +DF DL+IN  DLLK+             E + IL+DE QD
Sbjct: 168 EIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEE----------KYEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNTLQSSLIEAFHS------------KSLFCVGDYDQSIYAFNGADINIIGGFKDRF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----KDAKIFSLNKNYRSSRSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V+++D    P   ++   FD                  I+ MI          
Sbjct: 298 ----ELIVTRNDEFKAPSLLTFEELFDQ--------------YQNIAKMI---------L 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       +    R       I+ V        + L +K   ++   
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGVEVALRE----QGIASVRKGSGSFFESLEVKAFSSMLAL 386

Query: 428 ILSQEDDLSFVCM--------------LKSPLFNFSEDDIFK------------ICTQRH 461
           +++ +D ++F+ +              +   L      ++ K               +R+
Sbjct: 387 VVNPKDIMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRN 446

Query: 462 ETETVYEYIQKFANCGISKF-------------------QHVIKYIHELIHIAQFCSPHD 502
               ++  +++ A+    KF                      ++ I+  +  A       
Sbjct: 447 YQLGLFADLEELASETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSL 506

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ---------------NSYSSL 547
               ++      ++       +        ++   ++E                 +YS +
Sbjct: 507 TLVNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI 566

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + L      +     ++   V +++VH +KGLE  +VF++D     F ++ +  M 
Sbjct: 567 YKYYNFLTLGASEM-----SSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMG 621

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                              + EE  RL YV +TRA + L +   
Sbjct: 622 G----------------------------------SLEEERRLFYVAVTRAKNILYLSYA 647

Query: 668 SNTSNEKKSNQRTWY 682
               N+K S   + +
Sbjct: 648 KYDKNKKTSFAPSRF 662


>gi|72382484|ref|YP_291839.1| DNA helicase/exodeoxyribonuclease V subunit beta [Prochlorococcus
            marinus str. NATL2A]
 gi|72002334|gb|AAZ58136.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus
            marinus str. NATL2A]
          Length = 1261

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 128/935 (13%), Positives = 270/935 (28%), Gaps = 192/935 (20%)

Query: 135  AHYEEAKKKNCVLDFEDLIINTN------DLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               E+ K K  ++++ DL+   +      + +K +     I   ++Q     LIDE QDT
Sbjct: 360  RELEKRKSKKGLINYSDLLKLLDPKNQNSNAIKDKVNHNNIYKNLEQRYKVALIDEFQDT 419

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
              +Q  +++    +             L  +GD KQ+IYSF G      ++ +       
Sbjct: 420  DPVQLRLLKKAFGNRSS--------HLLLMIGDPKQAIYSFRGGSLNTYMKAR------- 464

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    I  +  ++RST  ++  ++K+F        LS                    
Sbjct: 465  ---EACDQIHLMNANYRSTKSLILTLNKLFLDGLIRSNLSTQELNPCSQE---------- 511

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
             L E    +   +     ++     D   +  S S +  +I   I + +       +   
Sbjct: 512  DLLELNGIKEPFKILNLIDTNQKVKDQRIKLDSKSKIEDKIPKVIGSYL---LELLSNNP 568

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            + +   DI +LV +      I        +  +I         +      + L      I
Sbjct: 569  KDLNPSDICILVNRHDQAKNIHSYL----SKIRIPSQLLSNENIFTREGAQILQIFINCI 624

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            +S  +      +  S L  ++++ + K      + +++     + +     K    I  +
Sbjct: 625  VSPHNQQKLALLACSELMQWTKEKLIK-SKIDGDFDSLSSKFYELS-----KLFPTIGLL 678

Query: 489  HELIHIAQFCSPHDFFTL--ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
              L +  +  S  D      +LG      Q +    +              +   +    
Sbjct: 679  GCLSNFLEGKSIADLSNRGTLLGDLYQSSQLVDEQIHRQKFN--AL--RASQWLSS---- 730

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
              +    +EQ P   +   + +++ V I+T+H +KGL+  +V       +    K +   
Sbjct: 731  --QRFQSIEQIPEEYQPNSAISNSSVNIITIHKSKGLQFKIVICPYLWQKPPDRKSLLW- 787

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                         + I +    N   S     ++K +  E  R+ YV  TRA  QLI+  
Sbjct: 788  --------KDNQNLLISKKYKWNKKYSSYQDFIRKESLNEAERIAYVAFTRAKKQLIVLW 839

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI--------KLTNSINKDEWIAYEWSTHH 718
             +    E        +     +   ++  K++        +L   I   + I    +   
Sbjct: 840  ANAAGQEGNPLSGFLFGSESINLKIEDHTKEMMENSFMKRELKVDIQDIKTIETSKTWSQ 899

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD-- 776
            P++        I     E    +  FS      N+  IL   + +       +  + D  
Sbjct: 900  PKSEVKLSLGAIPTHQFENSWGRYSFSKWITQKNDELILKDLSDELNEDHAFKGEIEDMS 959

Query: 777  --------------------------------NQTFNRGLIIHKLLQVIFTLPEHKR--- 801
                                             +    G  +HK+L+ I       +   
Sbjct: 960  FQEIDHLLVDKDQSIDRLEDQGWSKESPIGDFPKGPIAGTCLHKILERIDFNDIENQLKV 1019

Query: 802  KNFITSYCTKNAKLWPAKE-YKNLLLSITRL----------------------------- 831
               I              E    LL  I  +                             
Sbjct: 1020 STIIEEELNIVNISNSFIEPINILLKRIANIPLGGPLGKFKMKNLNTKSSIKELKFDIPI 1079

Query: 832  ------LENPMMTTAMSCDSYSEV---SVSGKINCPK-KDIIISGRIDQISISQ-----Q 876
                  +    +++    D  ++     ++  I+        ++G IDQ+          
Sbjct: 1080 CHEANPINTLELSSIFKEDVQNKYGSDYINKLIDLKIHSSGFLTGSIDQVFADNPNHEIA 1139

Query: 877  NIFIFEYKTHHHVPQ-------------------EIEHIPYTHIAQLSIYEKILKDSY-- 915
              ++ ++K++                        + E   + +  Q  IY   L      
Sbjct: 1140 KWWVLDWKSNWIGSSLSKEHRSSCGPSNYSISRMDEEMYHHHYPLQAHIYLLALHRFLNW 1199

Query: 916  ------PNKSLVCLLI-YVSEPKVFIIPQ-NKLNK 942
                  P K L   +  ++       +P   +L +
Sbjct: 1200 RLPDYSPQKHLGGYIYVFLRG-----LPDKEELEE 1229


>gi|227554836|ref|ZP_03984883.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis
           HH22]
 gi|227176036|gb|EEI57008.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis
           HH22]
          Length = 405

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/401 (15%), Positives = 133/401 (33%), Gaps = 82/401 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   L +          
Sbjct: 70  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNKLLETGGEDVWVST 129

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + QK ++ + +N  + D K+   +         
Sbjct: 130 FHSMCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDLNIDSKKYDPRSILGTISNA 189

Query: 111 RDRFNT-YKMFKSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T  K+ +   +    +       Y++  +KN  +DF+DLI+NT  L  ++  +  
Sbjct: 190 KNELQTPEKVAEMQGSLYEEIVAKCYEAYQKELRKNQCMDFDDLIMNTIRLFNEQPDT-- 247

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          + L  VGD  QSIY 
Sbjct: 248 -LAFYQNKFHYIHVDEYQDTNHAQYTLVNLLAARF----------KNLCVVGDADQSIYG 296

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             S+I L  ++RST +IL   + V     N +   
Sbjct: 297 WRGADMQNILDFEKDYP--------DASVILLEQNYRSTKNILAAANDVIKNNRNRREK- 347

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                               +LW           + ++  +        +        + 
Sbjct: 348 --------------------ELW-------TENIDGEKIVYYRGDTERDET-------QF 373

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
           I   I   +  +              D  VL R    + ++
Sbjct: 374 IVSQIQKEMRENDRI---------YGDFAVLYRTNAQSRVV 405


>gi|222823417|ref|YP_002574991.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter lari
           RM2100]
 gi|222538639|gb|ACM63740.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter lari
           RM2100]
          Length = 915

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 97/602 (16%), Positives = 197/602 (32%), Gaps = 119/602 (19%)

Query: 66  FSLLSSFFLTQK--FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           F  +   F T+       KN  T+ I+    +  +K  K      +  ++   Y++    
Sbjct: 223 FESMEE-FFTKPIIGNLDKNYFTKVIDN---EFLQKRAKLMQNIKEYFNQMENYRI---- 274

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L  +      E   K   L F D+ + T +L+        I +++D  I+H+LID
Sbjct: 275 SMLAKLLAHFKEARNENNTKQNALTFSDIALKTYELISDETNKDLIYFRLDGYISHLLID 334

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+++Q+++++ +  +   G+      R+ F VGD+KQSIYSF G + +   +  + 
Sbjct: 335 EFQDTNVLQYQILKPIIAELVSGEGVK-KNRSFFYVGDKKQSIYSFRGGKKELFDKLLKD 393

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +          +  L  ++RS   I+  V+ +F          + S          I 
Sbjct: 394 FPQ--------IKLEHLDTNYRSKKIIVDYVNDIFKD-----KFFDSSLKPSFTLQKSIK 440

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
           + G V++ +  +   +S                         A++    I N++      
Sbjct: 441 EGGYVEILQNHIPSKNSPVYEAS-------------------AQKTLTIIHNLLKKG--- 478

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                  I+  +I +LV    D      L +       I         L D ++++ L  
Sbjct: 479 -------IELSEICILVWVNNDA----TLIKEFLEKNGIKAYTQSNVALLDCISVRVLFE 527

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
             +  + +++   +                                            + 
Sbjct: 528 YAKACVFKDEFSLYF------------------------------------------VKS 545

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +++     + +       +    ++                    L  +L +    +   
Sbjct: 546 ILEKDFAYLKLDLNRGVCEILKYLID------HLKLDLS---DVNLITYLEYASTFDN-- 594

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
                     L  + P    +  A ++ V IMTVH +KGLE   + ++D  S+  S  + 
Sbjct: 595 ------FFEFL--FNPCQLNSLQAQNDGVGIMTVHKSKGLEFENLIVLDRLSK-KSLDND 645

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
             M                 +    +   +  +   +K   E+    LYV +TRA + L 
Sbjct: 646 TLMFDYDLEQGWEIKYRHSVRKYLEDESYNVFLAKREKLQAEDEINCLYVALTRAKNSLF 705

Query: 664 IC 665
           I 
Sbjct: 706 II 707



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 19/159 (11%)

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            + GL +H+ LQ      ++  +        K       +++  L   +T LL++     
Sbjct: 773 IHFGLALHEFLQYFDFNTKNNFEFCKQMIYKKYRFYLDDEDFNELFKRLTMLLKDESFNA 832

Query: 840 AM-SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
            +       E  ++ K            ++D ++       I +YKT             
Sbjct: 833 LLVGKKLLKEQIITYKGE--------QKQLDILAFDDNEAIIIDYKTG--------LNLS 876

Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYV--SEPKVFII 935
            H  Q+ +Y++ ++      S    L+YV   + ++  I
Sbjct: 877 EHKKQVLLYKEAIEKILAKTSTKAFLVYVLKDKVEMVEI 915


>gi|325124416|gb|ADY83939.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 659

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 102/660 (15%), Positives = 207/660 (31%), Gaps = 131/660 (19%)

Query: 8   SLNESYELIYKDLW-PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 65  AASEIVARVEQHVGVQAKGLRASTFHTFCMYLLRRN-----PQAFGLNQFSIIDRDDQLL 119

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +   +         T   
Sbjct: 120 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQSKLSEALIKQLPDAYEHKTQ-- 170

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-WIRYKIDQEINHILIDEV 185
                 L   YE+ K++   LD++D++      L+  +    W+          +L+DE+
Sbjct: 171 ---IAELMKTYEQRKRERNFLDYDDILSIVAVHLQNSEALTNWVAGFCQA----LLVDEM 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 224 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      ++ L L++RST +IL + + + +           +      +       
Sbjct: 273 --------DAEVLTLALNYRSTQEILDLSNWLLAHSPIDYQKQLQAHRGQGQKPQLHLFG 324

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              +                                    A  IA  +            
Sbjct: 325 NEFE-----------------------------------EANWIAQDLITRHQQG----- 344

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D +VLVR       +       +    I         L +   +KD+++L 
Sbjct: 345 -----ANWHDHMVLVRSGYSARYLEGAFIAAE----IPYRFIGGVKLLESAHVKDVLSLL 395

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R + +  DDL+++  L +      +    K+  +      V E  Q+    G    Q ++
Sbjct: 396 RIVSNPHDDLAWMRFL-TLWDGIGDVGASKLAQELMGIVDVEERCQRLERHGKVPLQAIL 454

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
                L  +       +    +     G Q   +    +    L +F +   +  +   S
Sbjct: 455 ----ILKQLDVLQQHVEASIGLALDALGEQLEQNYKTKDWSRRLKDF-DLVKQLARKHAS 509

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             + L   + +     +   +A+ + V ++T+H+AKG E  V ++               
Sbjct: 510 LGEFLEEYVLEPISVSEIEKAADQDLVTLITIHSAKGAEQKVCYVP-------------- 555

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                   N              EE  R+LYV +TRA ++LI+ 
Sbjct: 556 --------------------HVSPNQYPYARAQGDFDDVEEERRVLYVALTRAENELILT 595


>gi|189485139|ref|YP_001956080.1| RecB-like exodeoxyribonuclease V beta chain [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287098|dbj|BAG13619.1| RecB-like exodeoxyribonuclease V beta chain [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 1024

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 100/517 (19%), Positives = 174/517 (33%), Gaps = 52/517 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           K   V   + Y++ ++  H LIDE QDTSL+QW  I+   E+            T F VG
Sbjct: 340 KDNTVMPEVYYRLSEKYKHFLIDEFQDTSLVQWVGIKRFLEESLAEGG------TFFYVG 393

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D KQ+IY+F G EP+      R             +I  L  +FRS   I+   + +FS 
Sbjct: 394 DIKQAIYAFRGGEPEIFDAPSRDF------FSADVNIKTLNQNFRSGRTIVDFNNDIFSK 447

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
               + L+E                    L ++  ++H+              D   +  
Sbjct: 448 ENIERFLNEFYKKKNIECGFSKFIKTYSFLRQETPAEHNYGYIE-----IDVIDKTCENV 502

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
              I  R I                        KDI  L R   +   ++        + 
Sbjct: 503 KEKIKQRFINC------------VAQVSERFNPKDITTLCRANDEVLTVSSWL----LEN 546

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF----NFSEDDIFKI 456
              V  +    + ++  IK +++L  FI S  D LSF   +   +F         +  K 
Sbjct: 547 DFDVESSQTLNIRNNSVIKQIISLLMFINSPIDALSFSSFILGDIFSKISGIENVEFEKF 606

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
               ++      + + F +   + +    KY  +      F   ++     L   K    
Sbjct: 607 IFACNKRNRAGTFYKTFQDRYENLWD---KYFKDFFVKDGFAPVYELTLAALEKFK---- 659

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRI 574
            ++   ++    +  FL      E    S ++  +   +  +         SA  N +++
Sbjct: 660 -VTDNFSDSRAFIMRFLELVKDFETQG-SGIKNFLEYFDDLKDNEESLYIKSALGNGIKV 717

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MTVH AKGL+ PVV +      V   +         S  +   +          ++   +
Sbjct: 718 MTVHKAKGLQFPVVIIPFLKLSVKPDRKP----YFDSSGNKIKLFNISKNITKFSHKAKE 773

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           +    K S+      + YV MTRA  +L       + 
Sbjct: 774 IYDREKISSLLSELNVTYVSMTRAEYELYAIVPPKSG 810


>gi|121613648|ref|YP_001000466.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249507|gb|EAQ72467.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 676

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/615 (16%), Positives = 200/615 (32%), Gaps = 180/615 (29%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   +DF DL+IN  DLLK+             E + IL+DE QD
Sbjct: 168 EIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEE----------KYEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNTLQSSLIEAFHS------------KSLFCVGDYDQSIYAFNGADINIIGGFKDRF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----KDVKIFSLNKNYRSSRSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V+++D    P   ++   FD                  I+ MI          
Sbjct: 298 ----ELIVTRNDEFKAPSLLTFEELFDQ--------------YQNIAKMI---------L 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       +    R       I+ V        + L +K   ++   
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGVEVALRE----QGIASVRKGSGSFFESLEVKAFSSMLAL 386

Query: 428 ILSQEDDLSFVCM--------------LKSPLFNFSEDDIFK------------ICTQRH 461
           +++ +D ++F+ +              +   L      ++ K               +R+
Sbjct: 387 VVNPKDIMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRN 446

Query: 462 ETETVYEYIQKFANCGISKF-------------------QHVIKYIHELIHIAQFCSPHD 502
               ++  +++ A+    KF                      ++ I+  +  A       
Sbjct: 447 YQLGLFADLEELASETRFKFESEFDAHPILKLSKINDLCARNLEKIYLFLKKAMEIKHSL 506

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ---------------NSYSSL 547
               ++      ++       +        ++   ++E                 +YS +
Sbjct: 507 TLVNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELAKNYSDI 566

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + L      +     ++   V +++VH +KGLE  +VF++D     F ++ +  M 
Sbjct: 567 YKYYNFLTLGASEM-----SSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMG 621

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                              + EE  RL YV +TRA + L +   
Sbjct: 622 G----------------------------------SLEEERRLFYVAVTRAKNILYLSYA 647

Query: 668 SNTSNEKKSNQRTWY 682
               N+K S   + +
Sbjct: 648 KYDKNKKTSFAPSRF 662


>gi|54026511|ref|YP_120753.1| putative DNA helicase [Nocardia farcinica IFM 10152]
 gi|54018019|dbj|BAD59389.1| putative DNA helicase [Nocardia farcinica IFM 10152]
          Length = 1184

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 109/841 (12%), Positives = 220/841 (26%), Gaps = 144/841 (17%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
             +  + +       LW L +  V + +  +       + T    A + Q A      EE
Sbjct: 132 LPVEPSATLLT-ETQLWQLAHQVVRNWDGDLDTERTPVSVTEAVLALSGQLAEHLVEPEE 190

Query: 65  RFSL---LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                  L     T    P++          S  L++ ++   +                
Sbjct: 191 LAEAHAELEKLINTLPAGPRQR------GGPSKALRDIVRVQHERV-------------- 230

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              A L L + L     +A ++   LDF   +     L  +      +          +L
Sbjct: 231 ---ALLPLVRAL----NDALRRRGALDFGAQMSLAARLAAEHPE---VAEAERGRFRLVL 280

Query: 182 IDEVQDTSLIQWEVIRSL----TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
           +DE QDT   Q  ++ +L      D        +    + AVGD  QSIY + GA    +
Sbjct: 281 LDEYQDTGHAQRVLLSALFGGAAGDPEGTAGGRAPRPAVTAVGDPMQSIYGWRGASAANL 340

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            R            G    I+ L  S+R+  + L + + V + P           T    
Sbjct: 341 PRFATDFP---CAPGAPAPILPLLTSWRNPPEALALANLV-AEPLRQAAREAGGATVDAL 396

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
           R+    + G V L        +     ++ +          E                  
Sbjct: 397 RAKPGAEPGVVALALTETVVDERGWVAERIAAEWAARRAAGE------------------ 438

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                               VLVR+  D   +    R       + V       L     
Sbjct: 439 --------------PPPTSAVLVRRNADAAPLAEALRE----QGLPVEIVGLGGLLATPE 480

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--------------- 462
           + D++A  R I       + + +L    +     D+  +  +  E               
Sbjct: 481 VADIVATLRLIAEPAAGSAALRVLTGARWRIGVADLAALSRRARELSVVRTDTAVGAEIT 540

Query: 463 -TETVYEYIQKFANCGIS-----------------------KFQHVIKYIHELIHIAQFC 498
               +   +++     +                        + + + + +  L   +   
Sbjct: 541 DGAALEAALREVTPEPVEQAGLADAIADPGPAENYSAAGYQRIEALGRELAALRERSGQ- 599

Query: 499 SPHDFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
              +    +        +  +R          + LD F         +  +SL  L++ L
Sbjct: 600 PLTELVADVERTIGVGVETQARRAVLGAGAGREHLDAFAEVVAGYAADPGASLGGLLAFL 659

Query: 555 EQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI-- 608
                              + V+++TVH AKGLE  +V +     +VF         +  
Sbjct: 660 TAAESVENGLEPGEVEVAKDRVQVLTVHAAKGLEWEIVAVPHVVRRVFPSGTAGGTWLGA 719

Query: 609 ---MPSLNDDPGI------------PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +P+      +               +         ++     L++   +E  RL YV
Sbjct: 720 LAELPTALRGDRVAEDAAEGVPVLDLTDLYDRADLERALAAHKAALERRRIDEERRLFYV 779

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT-NSINKDEWIAY 712
            +TR    L++  H             +   +  +           +     +    +  
Sbjct: 780 ALTRTERVLLVSAHHWAETGDPKGPSDFLLELKSAAETPGGPAHGAVEIARWDDPPPVDA 839

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                    T     + +    D  +    L      ++  P       +         +
Sbjct: 840 VNPFADNPATAEWPRDPLGPRRDPVEQGAALVRAALAELRAPAGPRAPAVPHAPAVPRPA 899

Query: 773 L 773
            
Sbjct: 900 P 900



 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/394 (9%), Positives = 81/394 (20%), Gaps = 45/394 (11%)

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR- 649
             +TG        + ++         P               V  +          E+ R 
Sbjct: 796  AETGDPKGPSDFLLELKSAAETPGGPAHGAVEIARWDDPPPVDAVNPFADNPATAEWPRD 855

Query: 650  --------------LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                          L+   +            +             +        + +  
Sbjct: 856  PLGPRRDPVEQGAALVRAALAELRAPAGPRAPAVPHAPAVPRPAPRHTPTVPPPTDTDGP 915

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN------ 749
                  + + + +    +         P + E     +       +      +       
Sbjct: 916  LPSAPNDDVPQPQSPCLDPVVTDVPTDPDDPEGWAADVDALLAEHEATVRAAREVELPGQ 975

Query: 750  -DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                    L         +         N    RG   H  +Q  F+         +  +
Sbjct: 976  LPATALVELRADPAKLARRLRRPLPYPPNPLARRGTAFHAWVQRWFS------GTRLLGF 1029

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI 868
                    P          + R+ ++  + +A +    S + V           +I GR+
Sbjct: 1030 DELPGAGEPDPGEAAADAELARM-QDAFLNSAWA--HRSPIDVEVPFETSIAGTVIRGRM 1086

Query: 869  DQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK--------- 918
            D +         + ++KT        E        QL+IY          +         
Sbjct: 1087 DAVFAEPDGRWVVVDWKTGAEPDPGDEPAV---AMQLAIYRLAWARLMAARTGGDEQAML 1143

Query: 919  -SLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
              +     YV   +             AE+    
Sbjct: 1144 HRVDAAFHYVRSGRTIAPADLPGPDELAELIRAA 1177


>gi|167582406|ref|ZP_02375280.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           TXDOH]
          Length = 927

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 105/720 (14%), Positives = 222/720 (30%), Gaps = 67/720 (9%)

Query: 20  LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
           +W      +  +      S+   +      ++ L   ++        + L    L    +
Sbjct: 242 IWRDERGVLDALLADAQPSLNQRSHKPDAVSEALDAWARYFEQASAVAALPRAALKLTQS 301

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
             +    +          + + ++ +  +   +     +        L +A    A   +
Sbjct: 302 SLEKATKKGGTTPRHAFFD-VAQALEAAVAAVEAAQRARWLSLVEQWLDIAP---AELAQ 357

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ +  ++
Sbjct: 358 RKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIFDTI 414

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                           LF VGD KQ+IYSF  A+                   +  +   
Sbjct: 415 FA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASARYT 454

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L ++ RST  I+   ++VF     A  L       +R         G+      V +   
Sbjct: 455 LAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDATDP 506

Query: 320 SQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDI 376
                    WT     D L +  +    A   A  I+ ++      +       + A DI
Sbjct: 507 LAGAGDFRVWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAASDI 566

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D   
Sbjct: 567 AVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGDLRR 622

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV------------ 484
               L S  F      ++++                 +                      
Sbjct: 623 LRSALASDWFGLDAAALWRLEQGDAGPGGTEGAASDASGNDGHARAAAAGAVAPPSADTD 682

Query: 485 ----IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFT 536
               ++       + +       +  + G  +  ++ ++    E      + L E     
Sbjct: 683 AMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGPDGERRVTDINHLAELTQAR 742

Query: 537 LRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
              +     +L+ L +  L+      +    ++ N V+I+TVH +KGLE  +VF      
Sbjct: 743 ASAQPGIAPTLRWLAAQRLDGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLND 802

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                     +      +D+ G+ +                +   +    E  RL+YV +
Sbjct: 803 GGLREPPGSGLPDAREYHDESGVAVLHYGC--DEEAAERASREAAREQAAERARLVYVAL 860

Query: 656 TRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++     W A  
Sbjct: 861 TRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAVRWQALA 920


>gi|262280866|ref|ZP_06058649.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257766|gb|EEY76501.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 687

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 105/660 (15%), Positives = 212/660 (32%), Gaps = 131/660 (19%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 93  AASEIVARVEQHVGAQAKGLRASTFHTFCMYLLRRN-----PQAFGLNQFSIIDRDDQLL 147

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +   +         T   
Sbjct: 148 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQTKLSEALIKQLPEAYEHKTQ-- 198

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-WIRYKIDQEINHILIDEV 185
                 L   YE+ K++   LD++D++      L+  +    W+          +L+DE+
Sbjct: 199 ---IADLMKTYEQRKRERNFLDYDDILSIVAVHLQNSEALTNWVAGFCQA----LLVDEM 251

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 252 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 300

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I  L L++RST +IL + + + +                +   +  GQ 
Sbjct: 301 DAI--------IHTLDLNYRSTQEILDLSNWLLANSP---------IDYQKQLQAHRGQG 343

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              QL        +                          A  IA  +            
Sbjct: 344 QKPQLHLFGNEYEE--------------------------ANWIAQDLITRHQQG----- 372

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D ++LVR       +       +    +         L +   +KD+++L 
Sbjct: 373 -----ASWHDHMILVRSGYSARYLEGAFIAAE----LPYRFIGGVKLLESAHVKDVLSLL 423

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R + +  DDL+++  L +      +    K+  +      V +  Q+    G    Q ++
Sbjct: 424 RIVSNPHDDLAWMRFL-TLWDGIGDVGASKLAQELMGITDVEDRCQRLERHGKVPLQAIL 482

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             + +L              L L A   + +  +    +    L +F +   +  +   S
Sbjct: 483 -ILKQL--DVLQQHVEASIGLALDALGEQLE-QNYKTKDWSRRLKDF-DLVKQLARKHAS 537

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             + L   + +     +   +A+ + V ++T+H+AKG E  V ++               
Sbjct: 538 LGEFLEEYVLEPISVSEIEKAADQDLVTLITIHSAKGAEQKVCYVP-------------- 583

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                   N              EE  R+LYV +TRA ++LI+ 
Sbjct: 584 --------------------HVSPNQYPYARAQGDFDDVEEERRVLYVALTRAENELILT 623


>gi|261225552|ref|ZP_05939833.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           FRIK2000]
          Length = 436

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/505 (14%), Positives = 156/505 (30%), Gaps = 106/505 (20%)

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ QSIYS+ GA P+ ++   +              +I+L  ++RS+  IL   + 
Sbjct: 1   TVVGDDDQSIYSWRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANI 52

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           + +   +       S                                   E        +
Sbjct: 53  LIANNPHVFEKRLFS-----------------------------------ELGYGTELKV 77

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
              ++    A R+         T  + ++      Q KD  +L R    + +        
Sbjct: 78  LSANNEEHEAERV---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL--- 125

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
               +I    +          IKDL+A  R + + +DD +F+ ++ +P        + K+
Sbjct: 126 -MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLKKL 184

Query: 457 -CTQRHETETVYEYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                   ++++                   +++F H +  I  L       +  D    
Sbjct: 185 GEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDLIHG 244

Query: 507 ILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTI 561
           +       +   S    E  +  +++  ++        E +   +L ++++         
Sbjct: 245 MDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMME 304

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           +       ++V++MT+H +KGLE P V++V        H+                    
Sbjct: 305 RGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSID---------------- 348

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                              +   +E  RL YVG+TRA  +L            +  +   
Sbjct: 349 -------------------EDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEP 389

Query: 682 YDMVYDSFHNDERVKKIKLTNSINK 706
              + +   +D   ++ +   S  +
Sbjct: 390 SRFLLELPQDDLIWEQERKVVSAEE 414


>gi|302036648|ref|YP_003796970.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
 gi|300604712|emb|CBK41044.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii]
          Length = 717

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 115/719 (15%), Positives = 212/719 (29%), Gaps = 136/719 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVS--LSMETGNPTILKKAQTLQQASQTQCIEER 65
           S  E  E +   +              V+  L    G    ++   T+      + +   
Sbjct: 127 SSEEMLERVGALIGSRSQRVCGGTFHSVANMLLRRHGRVLGIEPGFTIMDRGDAEDLIAL 186

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
                      K  P+K  I +  +K    L+   +   DEF    D             
Sbjct: 187 LRAQLGLNEKDKRFPRKGTIAEIYSKCENTLRGLEEIVLDEFSHFADHLEAL-------- 238

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                  L   Y+ AK++  +LD++DL++   DLL K +     R  I Q+  +IL+DE 
Sbjct: 239 -----GKLQRAYQAAKRQRQLLDYDDLLVLLRDLLTKDEPK---RRAISQQFRYILVDEY 290

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q E+IR L            +   +  VGD+ QSIY+F GA  + ++       
Sbjct: 291 QDTNRLQAELIRKLAA----------THDNVMVVGDDSQSIYAFRGATFRNIMEFPSWFP 340

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I +L  ++RST  IL++ +++             +        + +   
Sbjct: 341 --------GAKIYKLEENYRSTQPILSLANEIIQEAPEKYTKHLFTRKLDGPLPALVEAA 392

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
           G                                    +  +R +A  I  +         
Sbjct: 393 G-----------------------------------ENAQSRFVAQKILELREEG----- 412

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                +   +I VL R    +  +        +   +  V        +   +KDL+A  
Sbjct: 413 -----VPLSEIAVLFRSSFHSFDLEIEL----SRCGLPFVKRGGIKFIEAAHVKDLLAHL 463

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R +++ +D +S+  +L   +          +          Y+ ++  +       + + 
Sbjct: 464 RVVVNPQDAVSWHRVLM-LVEGVGPKKAQDLVAAMVRVNDPYQVLRDSSGRSGKGLKQLG 522

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             +  L   +   SP +    +        +       + I  LD               
Sbjct: 523 VVLENL-SKSDDLSPTEQVNRVYEYYLPILKDHHDDYPKRIRDLDHLHTIAESY-----P 576

Query: 546 SLQELISELEQYPPT----IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            L E +++L   PP            +  +V + T+H+AKGLE   VFL+      F   
Sbjct: 577 GLTEFLADLALAPPDGSAVGVEPSGRDDEQVVLSTIHSAKGLEWQCVFLLWVVDGKFPSV 636

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                             YV +TRA   
Sbjct: 637 FSFNTDEELEEERRLL----------------------------------YVAVTRAKRY 662

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           L +    N         R+   ++       + V           +E   +EW   H  
Sbjct: 663 LFLTYPIN------VYDRSSGMLLSKPSRFLDHVSPRLFETLALVEEGHGHEWGHEHDR 715


>gi|221135348|ref|ZP_03561651.1| ATP-dependent DNA helicase Rep [Glaciecola sp. HTCC2999]
          Length = 407

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 141/376 (37%), Gaps = 76/376 (20%)

Query: 74  LTQKFTPQKNIITQEINKKSPDL-----KEKLKKSQDEFIKIRDRFNTYKMFKSTL--AS 126
           L   F+   +  T  + K   ++     K++LK  Q      ++     +   +T    +
Sbjct: 101 LKPGFSLFDDKDTMALLKDLTEVEFDGDKDQLKLLQSCISNWKNDLLLPEQLLNTAQSPA 160

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                     Y+   K    LDF+DLI+    LLK  + +   R KI  +I ++L+DE Q
Sbjct: 161 EKQFAVYYQQYQNHLKAYNALDFDDLILLPTLLLKHNEEA---RKKIQSKIKYLLVDEYQ 217

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+++++ L  +           R    VGD+ QSIYS+ GA PK +   +     
Sbjct: 218 DTNTSQYDLVKLLVGE----------RRRFTVVGDDDQSIYSWRGARPKNLQLLQEDFP- 266

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                  + ++I+L  ++RS+  IL   + +     +    +  S               
Sbjct: 267 -------ELNVIKLEQNYRSSRRILHCANILIQNNPHIFDKTLFSELA------------ 307

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             +  + VV++++                          A R+   I+ +I    I +  
Sbjct: 308 YGESLKVVVAKNED-----------------------HEAERV---IAELIAHKFINNTD 341

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                  KD  +L R    + +       L    +I    +          IKD+MA  R
Sbjct: 342 ------FKDYAILYRGNHQSRVFEK----LLMTNRIPYKISGGTSFFGRAEIKDIMAYLR 391

Query: 427 FILSQEDDLSFVCMLK 442
            +++Q+DD + + ++ 
Sbjct: 392 LVVNQDDDNAMLRIIN 407


>gi|239993134|ref|ZP_04713658.1| UvrD/REP helicase [Alteromonas macleodii ATCC 27126]
          Length = 701

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 87/543 (16%), Positives = 170/543 (31%), Gaps = 118/543 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L AHY + K +   LD++DL++    + +       I  K+ ++ +++L+DE QDT+++Q
Sbjct: 201 LFAHYAKTKIEQVSLDYDDLLLYCFHMAQ----VDAIAQKVREQFDNVLVDEYQDTNVLQ 256

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +++              +   L  VGD+ QSIYSF  A    +L              
Sbjct: 257 AGILK----------GFFPTGEGLTVVGDDAQSIYSFRSATVDNILNFPTAFS------- 299

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +I L  ++RS  +IL + + + S          D    +   S R        +  
Sbjct: 300 LPGKVITLQQNYRSHPNILNLSNTLLS--------ESDEGYKVSLFSERKSGPMPKWI-- 349

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                       +    A  I   +                 I 
Sbjct: 350 -------------------------TVENDMFQAEYIVERVLAAREEG----------ID 374

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K   VL R    +  +            I  V +      +   +KD++ + R+  + +
Sbjct: 375 LKQQAVLFRSSYHSDRLELEL----TRRNIPFVKHGGLKFLEASHVKDMLCILRWADNPK 430

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCGISKFQHVIKYIHE 490
             +S   +LK  L         ++     + +           +      F  ++  +  
Sbjct: 431 HKISAFRVLK-LLPGIGPKIAERVFNDLEKHDFALGKLRSFALSESAKPSFLSLVDLLDN 489

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           + H        +  + I    K   +            +++    + +         +  
Sbjct: 490 VHH--NNIPWTEQTSAIAAFYKDLLEANYDDHFTRFGDIEQLTMISGQYSSR-----ERF 542

Query: 551 ISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           ++EL   PP      +     + + + + TVH+AKG E   VF+++     F ++     
Sbjct: 543 LTELTLDPPQSTGDLAGKPLLDDDFLILSTVHSAKGQEWKHVFVLNVADGNFPNE----- 597

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             K   EE  RLLYV +TRA D+L + +
Sbjct: 598 -----------------------------YAAGDKRALEEERRLLYVAITRAKDELSLVQ 628

Query: 667 HSN 669
              
Sbjct: 629 PLK 631


>gi|159039659|ref|YP_001538912.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157918494|gb|ABV99921.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 1096

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 126/983 (12%), Positives = 276/983 (28%), Gaps = 188/983 (19%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQA--SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89
                S  + TG    L   + L                 L     T+ F           
Sbjct: 105  RGEPSPRLLTGPEQDLIIRELLDLVGEEPDNDPVGWPEDLRPALRTRAFAA--------- 155

Query: 90   NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC---- 145
                  L++ L ++ +  I   +        +   A    A      Y            
Sbjct: 156  -----QLRDLLMRAAERGIGPVE--LARLGERLGRADWPAAARFLREYVAVLALRDVGNR 208

Query: 146  ---VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
                 D  +L+ +   +L        +     + + H+ +DE  DT   Q +++ ++  D
Sbjct: 209  GSIAYDPAELVRSATGMLLDDPA---LLAAERRRLAHVYVDEYADTDPAQQDLLATVAGD 265

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                       + L  + D   S Y+F GA+P  V+      +   T +G   + +    
Sbjct: 266  ----------GKALVVLADPDSSTYAFRGADPGGVVTFPHRFR---TASGAPAAQVVFTT 312

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            S+R+   +L    ++               T  R R       GT ++            
Sbjct: 313  SYRAAPRLLEAHARLARRLRG-------PATHRRLRPLPTAATGTAEVRTFRS------- 358

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                                   A   A  +++ +    +        +   ++ VLVR 
Sbjct: 359  -----------------------AASEAAWLAHALRAAHLLD-----GVPWAEMAVLVRS 390

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE--DDLSFVCM 440
                  +  L R L      +VV  +   L    A+  L+ L R  L+ +  D+ + V +
Sbjct: 391  T--ARQLPSLRRALHAAGVPTVVHGEDLPLHLQPAVAPLLLLLRCALAPDRLDEEAAVAL 448

Query: 441  LKSPLFNFSEDDIFKICT-----------QRHETETVYEYIQK------FANCGISKFQH 483
            L SPL         ++             +R   E + E ++                Q 
Sbjct: 449  LHSPLGGADPLAERRLRQGLRVMALAAGDRRPSGELITEALRDPAELAGIDRRWAEPAQT 508

Query: 484  VIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFISRFGNE----------------- 524
            V   +      A     +  +    +  A    + + +                      
Sbjct: 509  VAGLLAVARETAARPGVTAEEVLWAVWRASGLAELWSAALARTPATAGEGDVARRRRAEA 568

Query: 525  ---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVH 578
                +D +    +   R  ++   + ++  +  +             +   + VR++T H
Sbjct: 569  ADRDLDAVMVLFDAAARFTDRLPGARVEVFLDHVLGQDLPADTLAPTADRGDAVRLLTAH 628

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             AKGLE  VV +      V+    ++   +           + +   +S        +  
Sbjct: 629  AAKGLEWDVVAVAGVQEGVWPDLRLRGSLL------GSERLVDVLAGRSAGAGPRASVVG 682

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD----------- 687
               +  +E  RL +V +TRA  +L++   ++ +     +       +++           
Sbjct: 683  QTSALLDEERRLFHVAVTRARRRLLVSAVASATVGGDDHDEQPSRFLHELGVADPPPAAA 742

Query: 688  ---------SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE---------- 728
                            +   +   ++     +A   +      +P  R            
Sbjct: 743  AGPDGDAASDEARTAPLPLSRPPRALTLASLVAELRAAVTDPASPALRRRAAAAELARLA 802

Query: 729  ----TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN--- 781
                      D   +             EP  + PS +++  + +L  LL  +       
Sbjct: 803  AEGVAGAHPSDWWGLRPLSDDRPLVADGEPVRVTPSGMESALRCSLRWLLERHGGSAPAG 862

Query: 782  ----RGLIIHKLLQVIFTLPEHKRKNFIT------SYCTKNAKLWPAKEYKNLLLSITRL 831
                 G ++H    ++       R+  +             A+     E       + +L
Sbjct: 863  AAQGVGNLVHAA-AMLAESASSDRRALLDYVASRFDAIELAARWMVGPERARAEAMVDKL 921

Query: 832  LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVP 890
            L    + T        E   + ++N P+  + + GR+D++ +     + + + KT     
Sbjct: 922  LR--WLATNPRRLLAIEHEFAVRLNDPRHPVDLVGRVDRLEVDADGRLVVVDLKTGKSTA 979

Query: 891  QEIEHIPYTHIAQLSIYEKILKD 913
                 +      QL  Y+  ++ 
Sbjct: 980  VTAADLAEH--PQLGAYQAAVEA 1000


>gi|328953552|ref|YP_004370886.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
 gi|328453876|gb|AEB09705.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109]
          Length = 652

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 96/595 (16%), Positives = 202/595 (33%), Gaps = 117/595 (19%)

Query: 80  PQKNIITQEINKKSP---DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
            +  +  +    + P    + E      ++ + +            T A       LN  
Sbjct: 134 LRDRLELKVSPGQFPRRQTIVEIFGALVNKNLDLETLLTREHPQFLTQA--PALTALNRL 191

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y+  K+++ +LD++DL++    LL + +    +R  + +   +I++DE QDT+ +Q E++
Sbjct: 192 YQRHKREHQLLDYDDLLLEGRRLLTEHED---LRLSLSEGYRYIMVDEYQDTNRLQAEIV 248

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L            +   + AVGD+ QSIYSF GA  + ++    +             
Sbjct: 249 KLLA----------FTHDNVMAVGDDSQSIYSFRGANFRNIMDFPSLFP--------GTR 290

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           II+L  ++RST  IL + + + +           +      +   +   G  +       
Sbjct: 291 IIKLEENYRSTQPILDLTNTIIAQASEKYTKCLFTQKKQGPKPVLLEAGGENE------- 343

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                                        ++ +  +++ +    T            + +
Sbjct: 344 ----------------------------QSQLVCQSLAELRKQGTSL----------RQM 365

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VL R    +  +           +I  +    F   +   IKDL+A  R   +  D LS
Sbjct: 366 AVLFRSAYHSFDLEIEL----LRQQIPFMKFGGFKFMESAHIKDLLAHLRVAANPRDSLS 421

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH--I 494
           +  +L+       +     +     E  ++   +Q   +   ++ +  ++ + EL+    
Sbjct: 422 WNRLLQLVPGIGKKSAQKFLTQLPQEGFSLQGALQWLTSQKGARAKAALQPLIELLEQLQ 481

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           +   +P     + L   +   +       + +  L+  L  T R       SL + +++L
Sbjct: 482 SPDLAPATRLNMALSYYEPILKTHFDDYPKRLRDLEHLLTITARY-----GSLGDFLNDL 536

Query: 555 EQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              PP       +     + + T+H+AKGLE   VF++      F               
Sbjct: 537 TLEPPASMAEITAEPGEYLTLSTIHSAKGLEWDAVFIIWAAEGRFPS------------- 583

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                +    +++  EE  RL+YV  TRA   L +    
Sbjct: 584 ---------------------VYSQEREAELEEERRLMYVAATRARRYLYVMYPK 617


>gi|289662333|ref|ZP_06483914.1| exodeoxyribonuclease V beta chain [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 899

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 105/769 (13%), Positives = 206/769 (26%), Gaps = 100/769 (13%)

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                  LF +GD KQ+IY F G + +  L      +              L  +FRS  
Sbjct: 15  AAGLEPALFLIGDPKQAIYGFRGGDVRTYLAAAVNAELAPP----------LSHNFRSRP 64

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIR-HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +L  +D +++    +     D       H  ++       +      +    +      
Sbjct: 65  GVLAAIDALYAQAGYSDAFLTDGIAFHPVHAGTKRVDEDLQRDGVTAPALTLWRAPEPPP 124

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-FSNGKKRVIQAKDILVLVRKRKDT 386
                        + ++        I   +       +    R +QA DI VLVR   + 
Sbjct: 125 PARGKPKPWSAGRARALATAACVAAIRGWLAGGRDGTATINARPVQAGDIAVLVRSHGEA 184

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             I      +     I  V   +  L       +L+AL + +L   DD      L + L 
Sbjct: 185 TRIQQALGAV----GIPAVAAGKQSLFATDEALELLALLQALLDPGDDSRLRAALATVLI 240

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--IKYIHELIHIAQFCSPHDFF 504
                 I  +          +   Q+ A     ++Q    +  + +L             
Sbjct: 241 GEDAIAIAAL----ERDGEHHRRWQQQALDWRERWQRGGPLALVGDLGATHG-------- 288

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE---QNSYSSLQELISELEQYPPTI 561
             +L    G ++  +         L E L                L   I+  +      
Sbjct: 289 QRLLALIDGERRLTNYLQ------LAELLQEADARALGPHGLVDWLSRRIANADDNDEAQ 342

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           +    ++   V+I+T+H +KGLE P+VFL   G         +   +             
Sbjct: 343 QLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIGRGDKGAGRHCVVHAPEIGRQLHW-- 400

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
             +++  +   S      K+  + E  RLLYVG+TRA   L I       +E+ +     
Sbjct: 401 --KTERDDPSWSAAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGPFHQHERTALAGML 458

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             +        E    I  +        +        P     +R    +  +       
Sbjct: 459 RALDALQGAAGEGAVVIDTSTPPANLPRLPPPIEAQVPPARNPQRHIAPEWWVYSFTQLA 518

Query: 742 KLFSPIKNDINEPYILNPS----------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
              +    D      +  S           +        E           G+++H + +
Sbjct: 519 NADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVANEAEPFDPRFAGNRFGVVMHDVFE 578

Query: 792 VIFTLPEHKRK--------NFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-------- 835
                  H  +                     +   E  + L  +T L+ +         
Sbjct: 579 RCDFAAWHAWRPGQAAPDGQAAPILEALQRGGYAQDELDDGLRMLTALIGHTLTVALPEG 638

Query: 836 -MMTTAMSCDSYSEVSVS---------------GKINCPKKDI----------IISGRID 869
             +         +E+                   +                  +++G ID
Sbjct: 639 TRLADVPEPQRRNEMEFHFAMRPTRVDALLALLHRFGVVGDRQAFGARQRLEGLMTGLID 698

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
                    ++ +YK++     + + +        +  Q  IY   L  
Sbjct: 699 LTYTVDGRWYVLDYKSNRLPSYDADALARAMAHSEYELQALIYTVALHR 747


>gi|225164825|ref|ZP_03727050.1| UvrD/REP helicase [Opitutaceae bacterium TAV2]
 gi|224800556|gb|EEG18927.1| UvrD/REP helicase [Opitutaceae bacterium TAV2]
          Length = 670

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/714 (12%), Positives = 196/714 (27%), Gaps = 69/714 (9%)

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            + I            +   L  S+RS   I+ +V++VF  P          T  +   +
Sbjct: 4   FREIFDHYNAARPGLIAEGRLDKSYRSAPPIIEIVNRVFGPPPPPPLNVGSPTLDVGRST 63

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             +G+ G  +    +    +      +     +   +      +  A  +     + I  
Sbjct: 64  LDVGRCG--ETAPALALSLNLPEPTCERWTREWRPHISARPQLTGHAAWVHAQDKDDIKA 121

Query: 360 DTIFSNGKKRVIQAK-DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            T+    +   +       +LV+            R        +V  +D  +  D+   
Sbjct: 122 TTLRILREIAPLDRGLTTAILVQSNNAATEFADYLRS--TGGLPAVAASDLHVCADNPLA 179

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
             ++AL +      D+ +   +  +PL       +        E  +     Q + +   
Sbjct: 180 AAMLALFKAAAHPGDEFARQHLRMTPL----HAALAARRWATPEDLSTGLLRQIYTDGFE 235

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
              +  ++ +           P D F                      +  D+       
Sbjct: 236 RTTEDWLRRLE------PALPPDDTFNR--------------------ERADQLAEAARL 269

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++     + E I   E++          +   +R+MT+H AKGL   +V L D      
Sbjct: 270 FDETGSRDIAEFIQFCERHTVKE----IESDAVIRVMTIHKAKGLGFDLVLLPDLAGNSL 325

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQS--KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           + +    + +      D    + +P       + +++            E   L YV MT
Sbjct: 326 ATRRHDALAVHKDNARDTRWILNLPPKLFYENDPVLAAHTAAEAADEAYEKLCLFYVAMT 385

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA   L +            N          S   D R            D      + T
Sbjct: 386 RAKLGLYLITEPVKEKSTSKNFPKILTDALGSGRGDTRATSTAAAEIAIGDLLAPGPYQT 445

Query: 717 HHPENTPLEREETIKQLMDEQKIPK---KLFSPIKNDINEPYILNPSTIDTKGKTN-LES 772
             P        +T  Q+  +         +     +         PS   T      L  
Sbjct: 446 GDPAWFHQRTLKTDTQMSTQHSPLDVGCWMLDVGYSAAPRRRARTPSGAHTGAIPGALLF 505

Query: 773 LLSDNQTFNRGLIIHKLL---QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                   + G  +H  L   + + T       + +            A      +    
Sbjct: 506 GTDGEHAASHGTAVHTALAAIEWLDTWNATDWTSTLQ----------TASIPATAINEAR 555

Query: 830 RLLENPMMTTAMS-CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ-------NIFIF 881
             +++  +    +     +EV           D  I+G  D++ +++         + I+
Sbjct: 556 ACIQSLALRALFARPTDTAEVWRERSFEAIIDDAWITGVFDRVVLTRDAATGRVTTVTIY 615

Query: 882 EYKTHHHVP-QEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKV 932
           ++KT       + + I   +  QL+IY +        P   +   L+      +
Sbjct: 616 DFKTDRVRDVADQDRIIARYNEQLTIYRRAAALLTGLPPDRIKAALVLTKLSHL 669


>gi|121636549|ref|YP_976772.1| putative exonuclease V subunit beta recBa [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224989021|ref|YP_002643708.1| putative exonuclease V subunit beta [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|121492196|emb|CAL70663.1| Probable exonuclease V (beta chain) recBa [first part]
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|224772134|dbj|BAH24940.1| putative exonuclease V subunit beta [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 897

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 110/820 (13%), Positives = 224/820 (27%), Gaps = 96/820 (11%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
              E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 83  PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 142

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
            L             +       ++  D +    ++    + + D    +         +
Sbjct: 143 ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 202

Query: 124 LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 203 KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 260

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 261 VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 308

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                    AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 309 --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           +            +            +     ++L +     + A               
Sbjct: 361 LASAPRP--APFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 410

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 411 SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 466

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           + L     + +          +  F  + + +        +  T             ++ 
Sbjct: 467 LCLLEAFDAPQRSGLVRAAACTMFFGETAESL----AAEGDALTDRVAGTLHEWADHARH 522

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           + V                      +L  + G +          +  + + L+     E+
Sbjct: 523 RGVAAVFQAAQ-------LAGMGRRVLSQRGGERDLTD------LAHIAQLLHEAAHRER 569

Query: 542 NSYSSLQELISELE---QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                L++ +         PP   R   ++   V+IMTV  AKGL+ P+V+L    ++  
Sbjct: 570 LGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNV 629

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
               I        L  D G        K        +    +     +  RL YV +TRA
Sbjct: 630 RSDDIL-------LYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRA 682

Query: 659 SDQLIICKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
             Q++                    ++  Q    D       +++         +     
Sbjct: 683 QSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPS 742

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                         P+       +    +       +   + +     +  ++    G  
Sbjct: 743 VEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSYSDLVRGSEAVTVTSEPAAGGR 802

Query: 769 NLE-----------------SLLSDNQTFNRGLIIHKLLQ 791
             E                  L +     + G ++H +L+
Sbjct: 803 ADEVEIAVFAAPGSGADLTSPLAALPSGASFGSLVHAVLE 842


>gi|331245511|ref|XP_003335392.1| DNA helicase II [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309314382|gb|EFP90973.1| DNA helicase II [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 979

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/711 (12%), Positives = 179/711 (25%), Gaps = 192/711 (27%)

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            L +           I   I H+LIDE QDT+ +Q+E++R L                + 
Sbjct: 187 KLFRSHPT-------IIAHIQHVLIDEFQDTNTVQYEIMRLLAH-----------RGAVT 228

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD  Q IY F  A+   + +  +              +  L  ++RS++ IL     V
Sbjct: 229 VVGDPDQGIYGFRYAQAINLEKMTKDFP--------GTQVALLEENYRSSSSILKASLAV 280

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                     +  ++               ++                            
Sbjct: 281 VQQDNERIDKNLYTSHPRVSSPMVRPFSNPIE---------------------------- 312

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                   A  IA  I  ++             +   D  +L+R    +  +    +   
Sbjct: 313 -------EAAFIAQEIHRLVAH-------TGGQLDYNDFCILMRYNALSRNLETALKT-- 356

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
              +I V         + + ++D++A  +   +     +F  ++ +P        I  + 
Sbjct: 357 --ARIPVRMIGAQKFFERVEVRDILAYLQLADNPTFSPAFERVINTPRRKLGLAAINAVK 414

Query: 458 TQ-RHETETVYE---------YIQKFANCGISKFQHVIKYIHELIHIAQ-------FCSP 500
                   +  E                     F+  +  I  L  +AQ        C  
Sbjct: 415 AASATHKISQMEVLVRAVRGKRFAGIQPAQTETFRKFVSIICNLQAMAQGVTTYLNGCPV 474

Query: 501 HDFFTLILGAKKGRQQFISRFGN---EVIDVLDEF------------------------- 532
            +    ++            +G    +    + E                          
Sbjct: 475 AEIIDNLVERINYADHLQKTYGPDAVQRDQNIQELKAFATHLAKESQATSNSLPLSQLSH 534

Query: 533 -----------------------LNFTLRNEQNSYSSLQE--------LISELEQYPPTI 561
                                  L+           SL +        L   L +   + 
Sbjct: 535 VEELHRSPVKPPNRPIFTMSDTDLDRLESMFNTENISLPDDIVEEITPLRQFLVESSLST 594

Query: 562 KRAHSANHN-----EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                 + +      V I T H++KGLE PVVF++     +F                  
Sbjct: 595 DTDTQESKDDNNQPRVTITTCHSSKGLEWPVVFVIAAEDGIFP----------------- 637

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--SNTSNEK 674
                               +  +     E  RLL+V MTRA   L +          E 
Sbjct: 638 ------------------FYRCSEPEEVREERRLLFVAMTRAQGLLYLTHSVERMQGAET 679

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           +S + + +        +D+      +      +               P   ++ IK  +
Sbjct: 680 RSQEVSIFLKKLIKQSSDKASPLDCIFTPKLPEVDSRLRQELSAVIGRPTAPDDVIKSRI 739

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +E +  ++    I +        +      + K N      +      G  
Sbjct: 740 EEYESKERKTFTIPDPSG--KRFSYPGSSQESKQNYNRWAQNRGPTQIGRF 788


>gi|114766742|ref|ZP_01445680.1| ATP-dependent DNA helicase [Pelagibaca bermudensis HTCC2601]
 gi|114541061|gb|EAU44117.1| ATP-dependent DNA helicase [Roseovarius sp. HTCC2601]
          Length = 680

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 99/617 (16%), Positives = 176/617 (28%), Gaps = 132/617 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            K L   Y  AK+   VLD++DL++    ++     +A I        +H+LIDE QDT+
Sbjct: 189 LKQLFGAYVSAKQAQNVLDYDDLLLAWAQVMSDEGFAAHI----GGAWDHLLIDEYQDTN 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++ +L              R L  VGD+ QSIY+F  A  + +L      Q    
Sbjct: 245 RLQARILMAL----------KPDGRGLTVVGDDAQSIYAFRAATVRNILDFPTGFQ---- 290

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L  ++RST  IL   + V                                
Sbjct: 291 ---PPADVITLDRNYRSTQPILEAANAVIGQARERYTK---------------------D 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           LW +  S    +                        AR     I     T T        
Sbjct: 327 LWTERASTEKPRLVTVATEGDQ--------------ARYFVDRILEDRETGT-------- 364

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + K+  VL R    +               +  V        D   +KDL+A  R + 
Sbjct: 365 --KLKEQAVLFRTSSHS----VQLEAELTRRNVPYVKFGGLKFLDSAHVKDLLAFLRLVR 418

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI--SKFQHVIKY 487
           +  D ++   +L+  +         ++             ++  A      + +   ++ 
Sbjct: 419 NPRDRVAGFRVLQ-LIPGIGPKAAGQVLDALDLAPDPLAALEDVAAPPRAGADWPGFVEA 477

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +      ++   P          +   ++            L +            Y + 
Sbjct: 478 MR-----SKADWPAALGHARAWYEPHLERM-HEDAEARRADLMQLEQIA-----TGYPNA 526

Query: 548 QELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           +  ++EL   PP      S     + + + + T+H+AKG E   V+L++           
Sbjct: 527 EAFLTELTLDPPDATSDKSGVPLKDEDYLILSTIHSAKGQEWKSVYLLNAVDGCIPSDLG 586

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                    EE  RLLYV MTRA D L 
Sbjct: 587 TGST----------------------------------HELEEERRLLYVAMTRAKDHLT 612

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +              R +      +        + +       D +    W+    +  P
Sbjct: 613 L----------GVPLRFYVTSQTRNGDRHVYAMRTRFIEKAMLDRFETLHWAPPVGQGAP 662

Query: 724 LEREETIKQLMDEQKIP 740
                 I      +++ 
Sbjct: 663 RPAPGQIDVAAKMRQMW 679


>gi|225157628|ref|ZP_03725018.1| UvrD/REP helicase [Opitutaceae bacterium TAV2]
 gi|224802695|gb|EEG20948.1| UvrD/REP helicase [Opitutaceae bacterium TAV2]
          Length = 678

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 95/562 (16%), Positives = 170/562 (30%), Gaps = 123/562 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                Y++ K++  +    D        L+    +  +         H+L+DE QDT+ +
Sbjct: 196 AFADAYQKRKREQNL---LDYDDLLELWLELLKKAPDVAAYFSHRFEHLLVDEYQDTNTL 252

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q ++I  +            +   + AVGD+ Q IYS+ GA+ + ++  +          
Sbjct: 253 QSQIIDLM-----------GAHHRIMAVGDDAQCIYSWRGADFENIMTFETR-------- 293

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I  +  ++RST  IL + + V       +   ++       R+ R          
Sbjct: 294 HPGTVIHRIETNYRSTPQILALANGVLEAQPRGRHFEKE------LRAHRSNSQKP---- 343

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                   L Q   A   A  I   IS ++              
Sbjct: 344 -----------------------FLVQAMDAREQAEFIIKRISGLVDEGCAL-------- 372

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              DI +L R       I        +   I  +        +   I+DL+AL +F+ + 
Sbjct: 373 --SDIAILYRAHFQALEIQVEL----SKRGIPYLITSGVKFFERQHIRDLVALLQFVYNP 426

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----------------YIQKFAN 475
            ++ ++  +    L    E    KI     E   +                         
Sbjct: 427 GNETAWARI-ACLLPKIGEKGAAKIHAAAREHARLLNLDLIDALSSDDVKSKVSKDAREG 485

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
               ++ H    + E+   A    P     + L        ++     +  + LDE    
Sbjct: 486 SDGGEWAHFCASLREVAA-AMHSDPKPAKAVELAIDGWYGDYLKGAFADYTERLDELKAL 544

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                Q      + L         T  R    + + +R+ TVH AKGLE   VFL++   
Sbjct: 545 I-TFAQRHEDIHEMLAQITLLNGETSDRKVEPDADAIRLTTVHQAKGLEYAAVFLINLAD 603

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                    L + ++   +EE  RL YV +
Sbjct: 604 GLFP-----------------------------------LRRSIENGDEEEERRLFYVAV 628

Query: 656 TRASDQLIICKHSNTSNEKKSN 677
           TRA D+L +C     S    + 
Sbjct: 629 TRARDELYLCVPKIGSRPGPNG 650


>gi|154484395|ref|ZP_02026843.1| hypothetical protein EUBVEN_02108 [Eubacterium ventriosum ATCC
           27560]
 gi|149734872|gb|EDM50789.1| hypothetical protein EUBVEN_02108 [Eubacterium ventriosum ATCC
           27560]
          Length = 660

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 164/544 (30%), Gaps = 111/544 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y    ++  ++D++D ++    +LK       +         +I +DE QDTS
Sbjct: 179 LAEIYKAYCGELRRQSLMDYDDQMVYAYTMLKTTP---QVLEYFQNMYQYICVDEAQDTS 235

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ ++I  L              + LF VGDE QSIY F  A P+ +L  +    +   
Sbjct: 236 KIQHKIIEILA----------MKNKKLFMVGDEDQSIYGFRAAYPEALLSFESTYPE--- 282

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  I+ +  +FRS   I++  D+     +     +  ++  +              
Sbjct: 283 -----GKILLMEENFRSDGAIVSAADRFIQKNKLRHKKNMKASRDMVK------------ 325

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                       Q S  + +A                       
Sbjct: 326 ----------------DIRLIEVKTRKSQYSYLTKVAENCNV------------------ 351

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFI 428
                D  VL R  +    +  +         I     +      +H  + D+  + RF 
Sbjct: 352 -----DTAVLYRDNESIIPVVDMLE----RSGIDYKIKNADLTFFNHKIVTDIKNIIRFA 402

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            + +D   F+ +        S+    + C    E                   +  +K +
Sbjct: 403 ENPKDTEIFMQIYFKIGTYLSKMGAIEACRISEEKGIPVIDSALRYGRIPKGTEKSLKAM 462

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              I      S +     I+               +    +       L+    +  + +
Sbjct: 463 KTHIESILEESAYKAVYRIVNFMGYSAYLERAKIKDGKISI-------LQALAANEKTPE 515

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           + ++ L++    IK   +    +  + T+H++KGLE   V+++D    VF  K +     
Sbjct: 516 DFLNRLDELAMIIKNKKNNYDCKFTLSTIHSSKGLEYDTVYIMDVKDGVFPEKVVAN--- 572

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                          +  T EE  RL YV +TRA +QL I    
Sbjct: 573 ------------------------RKNATDEEIKTYEEERRLYYVAVTRAKNQLCIFDFK 608

Query: 669 NTSN 672
           ++S 
Sbjct: 609 DSST 612


>gi|62184654|ref|YP_219439.1| putative UvrD/REP helicase [Chlamydophila abortus S26/3]
 gi|62147721|emb|CAH63465.1| putative UvrD/REP helicase [Chlamydophila abortus S26/3]
          Length = 1045

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 120/801 (14%), Positives = 236/801 (29%), Gaps = 158/801 (19%)

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
            T + L     +  +   + +    ILIDE QDT   QW +   L               +
Sbjct: 347  TLEDLLHSSQAEEVIPSLRKRFQLILIDEFQDTDRKQWNIFAKLFA-------HKDFSGS 399

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            LF +GD KQSIY +  A+    L+ K    K         S + L  ++RST  ++  ++
Sbjct: 400  LFLIGDPKQSIYEWRNADLVTYLKAKSTFPK--------TSQLHLINNYRSTPQLMQAIN 451

Query: 276  KVFSIPENAQGLS-EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             +F        +   +           +      +        +D+  +           
Sbjct: 452  ILFCKCSPFLEIPGYEPIEYHSLTPQSLEYFDNTEHAPIHFFSYDNVLD----------- 500

Query: 335  SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                       A  I+ T +++  T           I    + +LV              
Sbjct: 501  ----------QAAWISQTAAHLQAT---------HGIPFGRMAILVSDSAQAFD------ 535

Query: 395  FLKNDYKISVVGNDRFILTDHLAIKDLM-ALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
             L     I V       +        L  A    I   E+      +L S LF    +D+
Sbjct: 536  -LITHCSIPVSFFKNKSIFHLTETYLLTLAWLEAIFYPENYEKIQRVLLSSLFRHDLNDV 594

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             +    + E  + Y +  +                        F + H     +L   +G
Sbjct: 595  LE----KKEHYSSYFFSLRSYIFDHGLLATFY----------HFMTLHG--EALLKTPQG 638

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                      + ++ L  +L       Q+    LQ               ++S +   ++
Sbjct: 639  ------DLTFQEMERLCAYLGTISSQPQHQLLYLQYFSETGRWEENLSFSSYSEDTEILK 692

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I T+H +KGLE  +VF                                            
Sbjct: 693  ITTIHASKGLEYDIVFCPGLD--------------------------------------- 713

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
               K  K  +  E+ R +YV  TRA  QL I   ++ S  + +       +      +  
Sbjct: 714  ---KSKKNKSSSEWIREMYVACTRAKKQLFIPFQTSLSTRRNT------ALTNYVNQDGS 764

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLER----EETIKQLMDEQKIPKKLFSPIKN 749
                + L  +++K+    +  ST + ++                +      +        
Sbjct: 765  HASILDLAKNLSKEHPSLFSLSTTNTQDRSTWPIYHITPPATFALSSYPTKQIFSFSSVK 824

Query: 750  DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---FTLPEHKRKNFIT 806
             + +  +L  S ++    ++        +    G++IHK+L+ I   F +P  K    + 
Sbjct: 825  TMLDNEVLLDSDMEISSISSAL-----PRGRKTGILIHKILENISPNFKIPMSKIFTTVL 879

Query: 807  SYCTK-NAKLWPAKEYKNLLLSITRLL----ENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
             +    + + +     + L  +I+  L     +  +         SE +         KD
Sbjct: 880  HFVKNTHLEGYEEIISEKLFSTISSPLSFTSASFALKDICPDKILSEEAFL----FSNKD 935

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY---THIA------QLSIYEKI-- 910
             +  G ID     Q   +I ++KT        ++      ++I       Q +IY     
Sbjct: 936  QLWQGAIDLFFEHQGKYYIIDWKTSFLGETSSKYSQENLFSYIKEHNLDYQGAIYIHAAK 995

Query: 911  --LKDSYPNKSLVCLLIYVSE 929
              L+       +    +++  
Sbjct: 996  RFLQQFDITSDVEMGFVFIRG 1016


>gi|255539935|ref|XP_002511032.1| ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
 gi|223550147|gb|EEF51634.1| ATP-dependent DNA helicase pcrA, putative [Ricinus communis]
          Length = 1089

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 102/745 (13%), Positives = 220/745 (29%), Gaps = 149/745 (20%)

Query: 8   SLNESYELI--YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           + +E  + I             +S  + +      +      +K +   +        +R
Sbjct: 255 AASEMRDRIGGVAGKAIAKELTISTFHSFSLQLCRSHA----EKLERTSEFLIYGHGHQR 310

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            +++ +  L +K   + ++ +    K +  L   +        + +    T   ++    
Sbjct: 311 RAIIEAVRLLEK--EKTDVQSLHACKPAEALNGIILIYWCALFQAKASGKTPADYQKMGD 368

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   +  +Y +  K    LD+ DLI  +  LL        +  +       I++DE 
Sbjct: 369 --EIGASILGNYNDILKSCNALDYHDLISCSVKLLTDYPD---VFKECQDSWKAIVVDEF 423

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDTS +Q+ ++R L                +  VGD+ QSI+SF+GA+       +    
Sbjct: 424 QDTSGMQYRLLRLLAS-----------HNHITIVGDDDQSIFSFNGADISGFDSFRLDFP 472

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I L  ++RST  I+     +                            
Sbjct: 473 NY--------REIRLNKNYRSTRHIVEAASSLIQNNMKRCRF------------------ 506

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                            +   ++ +    ++ +  +       +   I  M    +    
Sbjct: 507 ----------------KDVVTDNSSGSKITIKECQTEHAQCSFVLDKILEMASDGSPAKQ 550

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    +I +L R++    L     R  K  + +               +K ++A+ 
Sbjct: 551 ------NYGNIAILYRRQVSGKLFQVAFRDRKMPFNVH-----GVAFYRKKVVKAIIAML 599

Query: 426 RFILSQEDDLSFV---------------CMLKSPLFNFSEDDIFKICTQRHE-TETVYEY 469
           R  L + DD  +                 ++       +      I   +   +  +   
Sbjct: 600 RTALPKCDDGPYRQAFKALLPFEKDEKKRVVDHVEKILTIRKCSFISAAKDIFSAKISGT 659

Query: 470 IQKFANCGISKFQHVIKYIHELIHI-----------AQFCSPHDFFTL----------IL 508
            ++       K    ++ I +L+H            A                     +L
Sbjct: 660 FKRSQLNQGRKVLLTLEMILKLVHREQSISAVITSVANMVPQQYLLEQRAVVDVDGGKLL 719

Query: 509 GAKKGRQQFISRFGNEVIDVLD-----EFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
                 +  +    ++V D L      + +      E+   ++L++ I  + +      R
Sbjct: 720 NEDNDLRSVLQYLLDDVSDFLSMQCAIKDVGAVREEERGCITTLKDFIDYITEREKENFR 779

Query: 564 A-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +    N N V + T+H +KGLE  +VF++          H                    
Sbjct: 780 SWRHENENSVTLTTIHQSKGLEWDIVFIIKANESEIPLLHEFNGIT-------------- 825

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                              ++ EE  RLLYV MTRA  +L I  ++  SN +      + 
Sbjct: 826 ---------------KENGTSIEEERRLLYVAMTRARKKLFILYYTLDSNWQMLQPSRFL 870

Query: 683 DMVYDSFHNDERVKKIKLTNSINKD 707
             + D     +    ++   +  +D
Sbjct: 871 KEIPDHLREIQAEVCLRDLQTEPQD 895


>gi|317403517|gb|EFV84017.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54]
          Length = 696

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 106/732 (14%), Positives = 204/732 (27%), Gaps = 127/732 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +      + + +  L   Q +    +       G   +   AQ   L +A    
Sbjct: 78  RRAAQEMERRVGSVLQRVMNLRGTQQAPSLPWAGTFHAIGARLLRDCAQRIGLSEAFTIH 137

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              +   L+         +  K+     +      +  ++  SQ     +      +   
Sbjct: 138 DRGDAEDLMGMVRHELGLSATKSRFP--LKGTCLAIYSRVVNSQTPVADVLHGTFPWCAQ 195

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                     K L   Y  AK+   VLD++DL++   +++    ++A +        +H+
Sbjct: 196 WEDE-----LKNLFRAYVAAKQDQQVLDYDDLLLYWAEMMGDAAIAADV----GARFDHV 246

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  +  ++              R L  VGD+ QSIYSF  A  + +L  
Sbjct: 247 LVDEYQDTNRLQAAIRLAM----------KPDGRGLTVVGDDAQSIYSFRAATVRNILDF 296

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                       Q   +I L  ++RST  IL   + V  +          S         
Sbjct: 297 PAQFP-------QPARVITLDRNYRSTQPILNASNAVIGLAAERYAKDLWSDRQSSQLP- 348

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                              L   S  +  AR +A  +       
Sbjct: 349 ----------------------------------ELVTVSDEAGQARWVADQVLAQREGG 374

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                        K    L R    +  +            I  V        +   +KD
Sbjct: 375 ATL----------KSQAALFRTSSHSAALELEL----TRRNIPFVKFGGLRFLEAAHVKD 420

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN--CGI 478
           L++L R+  +    ++   +    L         K+     ++      +++F       
Sbjct: 421 LLSLLRWAENPRGRMAGFRV-AQLLPGIGPATAAKLMDAMTQSAEPLRALREFKPGAAAQ 479

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
           +++         L   +          L L    G+ + +          LD+       
Sbjct: 480 AEWGAFADTYAALADPSLRWPAD--VDLALRWYAGQLERLYDDARVRKTDLDQLARIAAG 537

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
                  S +  ++EL   PP      S     + + + + T+H+AKG E   V++++  
Sbjct: 538 Y-----PSRERFLTELTLDPPDATSDESGAPSRDEDYMILSTIHSAKGQEWKAVYVLNVV 592

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                             EE  RLLYV 
Sbjct: 593 DGCIPSDMSTGS----------------------------------AEEIEEERRLLYVA 618

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA ++L +         +++     +     + +    +  +        D       
Sbjct: 619 MTRAKERLQLIVPQRFYVHQQTGMGDRHVYGSRTRYITNAMLPLFDHLPKPPDLPAREAK 678

Query: 715 STHHPENTPLER 726
           +   P      R
Sbjct: 679 APQAPSVDVARR 690


>gi|296123691|ref|YP_003631469.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
 gi|296016031|gb|ADG69270.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776]
          Length = 700

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 107/723 (14%), Positives = 222/723 (30%), Gaps = 130/723 (17%)

Query: 6   GLSLNE-SYELIYKDLWPLPYFQVSDINKYVS----LSMETG----NPTILKKAQT-LQQ 55
           G+   E       +        +V  +    +    ++   G      T    A   L++
Sbjct: 66  GIDPGEILLLTFTRRAAAEMIRRVEQLLAVAAKSPGIARIHGRHVVGGTFHAIATRHLRE 125

Query: 56  ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
             Q   ++  F++L            ++ +     +K   LK    +     +  R   +
Sbjct: 126 FGQYLGLDADFTILDRSDAEDLMNQLRSELDITRQEKRFPLKGTCVEIYSRCVNTRQPLS 185

Query: 116 T-YKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
              K      A      K L   + + K++  +LD++DL++    LL+           +
Sbjct: 186 LVLKETFPWCAEHEAGLKALFQLFTQRKEEQRILDYDDLLLFWLALLQDSPAVPL----L 241

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            Q    +L+DE QDT+ +Q E++R+L              + L  VGD+ QSIYSF  A 
Sbjct: 242 RQRYKAVLVDEYQDTNALQGEIVRAL----------RPDGQGLTVVGDDAQSIYSFRAAT 291

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            + +LR  +             +++ L  ++RS+ +IL   + V S+    +     +  
Sbjct: 292 IENILRFDQEYP--------GTNVLTLSQNYRSSPEILAASNLVMSLATEGRKKQLWTNR 343

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
             + +   +      +                                    +  +A  I
Sbjct: 344 PPQGKPLLVNCRDDNE-----------------------------------QSTLVAERI 368

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +              +  K   VL R    +  +        +   I  +        
Sbjct: 369 LELREMG----------VSLKGQAVLFRASHHSATLEIEL----SRRNIPFIKFGGLKFV 414

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
           +   +KD MA+ R   +  D +S + +L   L         ++  +     + +E  ++ 
Sbjct: 415 EAAHVKDAMAMLRLAENPRDIVSALRVLL-LLPGIGPKTARQLTERLGSGSSAFEPWREH 473

Query: 474 ANCGISK--FQHVIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQFISRFGNEVIDVLD 530
                +K  +   +  +  L+   Q  +P       +        +         +  L+
Sbjct: 474 TPAAATKIHWPVFVALLRTLVKGGQTTTPLPLQLAQVRQFLAPLLEQKYDHAPARLRDLE 533

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESP 586
           +      R E  S     + ++EL   PPT  +  + +     + + + T+H+AKGLE  
Sbjct: 534 QLEIIAARYESRS-----QFLAELTLDPPTSTQDFAQDPLLDEDWITLSTIHSAKGLEWD 588

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V+++                                            +        EE
Sbjct: 589 AVYVLHAADGNIP----------------------------------ADMATRNPREIEE 614

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV +TRA   L +          K+            F  D+ +   ++     +
Sbjct: 615 ERRLFYVALTRAKTHLQVYHPQRYYFHGKNQSDRHSYSQRTRFLPDDILTAWQVVTPRIQ 674

Query: 707 DEW 709
           +  
Sbjct: 675 EPA 677


>gi|289641082|ref|ZP_06473250.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509023|gb|EFD29954.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 1327

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 86/687 (12%), Positives = 186/687 (27%), Gaps = 88/687 (12%)

Query: 10   NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
             ++  L++   + +    V                 + ++   L     ++     F  L
Sbjct: 683  GKTRTLVHSIAYRVRECAVPAERCLAVTFTRRAAAELRERLDALIPQQASRVFATTFHGL 742

Query: 70   -----SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
                           P   +  + +  +   L+E L  +      +          +   
Sbjct: 743  GLRMVQEQHARLGLGPDVAVADEAVRTQI--LREALAGTASGTRNLERLRRALAGLRRAR 800

Query: 125  ASLT-----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            A            +   YE   +   ++D +DL+      +++      I  +      H
Sbjct: 801  ALGEPTDGHELAVVARGYERELRARNLVDLDDLVQLPVLAMREHPE---IADEYRARWQH 857

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR----TLFAVGDEKQSIYSFHGAEPK 235
            + +DE QD   +Q+ ++  L   F                L A+GD  Q+IYSF G++  
Sbjct: 858  VWVDEYQDVDELQYILLTMLAGRFGDASPACPPEPVPAANLCAIGDPDQAIYSFRGSDVG 917

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
              LR +   +           ++ L  ++RST  I+    ++        G +  +    
Sbjct: 918  FFLRFRDDFR--------DAKVVSLTRNYRSTPVIVEAAVRLIEPATLVPGRTLGAVGEH 969

Query: 296  RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             H +              ++ +   + +          ++L   S               
Sbjct: 970  PHSA------------PVLLRRTADEADEASVVVGLIEEALGGTSF-------------- 1003

Query: 356  MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                DT      +  +   DI VL R  +    +        +               D 
Sbjct: 1004 -HALDTGVDGTGQARLSFSDIAVLYRTARQARPVMDAL----DRQGFPFQRRSHNRFADT 1058

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
              +    A    +    DD        +P        +    T       V   ++  A 
Sbjct: 1059 PGV----AYL--LELVGDD--------TPADGIPAAPVLPADTVPARGRGVLARLRAAAQ 1104

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
              +     +          +   +  D  +  +             G      +   L+ 
Sbjct: 1105 IALDSAAGLPGRGGPASSGSLPGTAPDARSGPVSPAG-PASPTPPAGPPNEAEIRYALDV 1163

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                       L+   SE+               + + ++T+H AKGLE   V ++    
Sbjct: 1164 LTSLATECGDDLERFRSEIALGAEVDTFDP--RADRISLLTLHAAKGLEFGFVVIIGCED 1221

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             +   +                  +      S +    +              RLL+VGM
Sbjct: 1222 GLLPLRWAGASPAGSGAGAGAAAGLTGRDDGSDDGDEEE-------------RRLLFVGM 1268

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWY 682
            TRA +QL++   +    +    + + +
Sbjct: 1269 TRAREQLVLTHAARRGRQVSEVRPSPF 1295


>gi|31791812|ref|NP_854305.1| exonuclease V subunit beta [Mycobacterium bovis AF2122/97]
 gi|31617399|emb|CAD93509.1| PROBABLE EXONUCLEASE V (BETA CHAIN) RECBA [FIRST PART]
           (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE
           V POLYPEPTIDE) [Mycobacterium bovis AF2122/97]
          Length = 897

 Score =  182 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 115/823 (13%), Positives = 220/823 (26%), Gaps = 102/823 (12%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
              E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 83  PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 142

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
            L             +       ++  D +    ++    + + D    +         +
Sbjct: 143 ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 202

Query: 124 LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 203 KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 260

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 261 VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 308

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                    AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 309 --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           +            +            +     ++L +     + A               
Sbjct: 361 LASAPRP--APFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 410

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 411 SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 466

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           + L     + +          +  F  + + +        +                   
Sbjct: 467 LCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTD------------------- 507

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
             V   + E    A+       F     A  GR+    R G   +  L            
Sbjct: 508 -RVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAH 566

Query: 542 NSYSSLQELISELEQYP------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                L  L   L +        P   R   ++   V+IMTV  AKGL+ P+V+L    +
Sbjct: 567 RERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN 626

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
           +      I        L  D G        K        +    +     +  RL YV +
Sbjct: 627 RNVRSDDIL-------LYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVAL 679

Query: 656 TRASDQLIICKHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           TRA  Q++                    ++  Q    D       +++         +  
Sbjct: 680 TRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQSQVPDRCTPRVTDEQAWAVFAQWEAAG 739

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                            P+       +    +       +   + +     +  ++    
Sbjct: 740 GPSVEESVIGARSSLEKPVPVPGFEVRHFHRRIDTTWRRTSYSDLVRGSEAVTVTSEPAA 799

Query: 766 GKTNLE-----------------SLLSDNQTFNRGLIIHKLLQ 791
           G    E                  L +     + G ++H +L+
Sbjct: 800 GGRADEVEIAVFAAPGSGADLTSPLAALPSGASFGSLVHAVLE 842


>gi|257879068|ref|ZP_05658721.1| UvrD/REP helicase [Enterococcus faecium 1,230,933]
 gi|257813296|gb|EEV42054.1| UvrD/REP helicase [Enterococcus faecium 1,230,933]
          Length = 728

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 93/587 (15%), Positives = 200/587 (34%), Gaps = 115/587 (19%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           E++ +   E     D+     + +     LT         +E K+   +L+F D++ N  
Sbjct: 229 EEMVQLVKEKYDSIDKNARQPISERLYGLLT-------ELQEQKRSQQLLEFNDVLQNLK 281

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
             L+  +    I++ I Q+ +++ IDE QDT+ +QWE+++ +T++         +   L 
Sbjct: 282 SALENEE----IQHYIGQKYDYLFIDEFQDTNPLQWEIVKRMTKE---------NRIKLI 328

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIY F G+EP  +   ++               + L  ++RS A I+   +++
Sbjct: 329 VVGDDDQSIYGFRGSEPAYIKNFEKEYPT---------KTLFLLTNYRSRAAIVQGANRL 379

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            S  +N            +       + G ++ +    ++ +S                 
Sbjct: 380 ISYNKN--------DRIPKAMIPAQKEAGVMEAYLFSDTKAES----------------- 414

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                    + +   I   I           +  + K+ ++L R    T  +        
Sbjct: 415 ---------QWLIKQIQTFIQ----------KNGKYKESIILYRSASQTQQLVQSLLKTN 455

Query: 398 NDYKI----SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--FNFSED 451
             + +       G        H   + ++     +  Q+ + ++  +L+  +      + 
Sbjct: 456 IPFVLEADSPYEGIFGIKSFQHFY-QKIVHWQTALNLQKKNQAYQQLLRQLMADCYLKKS 514

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
           +  +  + +++  +V +YI   +    SK   + ++   L    Q    +      L   
Sbjct: 515 ECDQYFSPKYQNISVADYILSISPNLKSKSAEIREFEEALRKTDQHQEIYSLVQSYL--- 571

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-- 569
               +          + + E +             LQ L  E +     +K    A    
Sbjct: 572 -HLPRIAKEIDQSDQEWIREEVKQHATF-----RRLQALSQETQATAKELKTRLIAYRQG 625

Query: 570 --NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + + I ++H +KGL    VFL+        +    +  ++                  
Sbjct: 626 KLDALCIQSIHKSKGLSYRNVFLIGCNEGSLPYNGATEKKVIDFNEIKAEPV-------- 677

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                         +T EE  RL YV MTRA ++L +C     ++ K
Sbjct: 678 --------------TTIEEERRLFYVAMTRARNRLYLCVPQMKNSRK 710


>gi|297744967|emb|CBI38559.3| unnamed protein product [Vitis vinifera]
          Length = 951

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/734 (15%), Positives = 220/734 (29%), Gaps = 156/734 (21%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E    I          +V  ++ + S +++       K      +       ++R +
Sbjct: 68  AASEMSGRIAAVAGKETAKEV-TVSTFHSFALQLCRSHAEKLG-RTSEFLIYGHGQQRRA 125

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTYKMFK 121
           ++ +  + +    +KN    ++ ++S D+      K+K KK Q    + +    T +  +
Sbjct: 126 IIEAVRIFETENSKKNNNGSKVGEESNDINSPQNFKDKSKKWQKFVTQAKASGKTPEECR 185

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
           +      +   +  +Y +  +    LD+ DLI  +  LL        +  +  +    ++
Sbjct: 186 NMGD--EIGASILGNYSKILRTCNALDYHDLISCSVKLLSDFPE---VFRECQESWKAVV 240

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDTS +Q+ ++R L                +  VGDE QSI+SF+GA+       +
Sbjct: 241 IDEFQDTSAMQYCLLRILAS-----------HNRITIVGDEDQSIFSFNGADVSGFNSFR 289

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +               I L  ++RST  IL     +                  +   + 
Sbjct: 290 KDFPNH--------KEIRLNKNYRSTRCILEAASSLIQNNMKRC--------QSKKVLTD 333

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                 V +                           +  S       +   I        
Sbjct: 334 NSTGSRVTI--------------------------KECHSEEAQCAFVVDKILE------ 361

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
           I S+          + +L R++    +     R  K  + I               ++ +
Sbjct: 362 ITSDDSVAKYSFGSVAILYRRQVSGKVFQTAFRDRKIPFNIH-----GVAFYRKKVVRAI 416

Query: 422 MALGRFILSQEDDLSFVCMLKSPL----------------FNFSEDDIFKICTQRHETET 465
           +A+ R  LS  DD S+  + K+ L                 + +    F        +  
Sbjct: 417 VAMLRTTLSGCDDGSYRQVFKALLPCDKEDKKRVIEHIDKISITRKCSFVSAASDIFSAK 476

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHI-----------AQFCSPHDFFTL--ILGAKK 512
           V    ++       K    +  I +L+H            A             ++    
Sbjct: 477 VSGTFKRSQLTQGRKVLFTLDMISKLVHREQSISAVITSVANMIPQKYLLEQRAVVDVDG 536

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRN-----------------EQNSYSSLQELISELE 555
           G  + ++   N++  VL   L+                      E      L+  I  + 
Sbjct: 537 G--KLLNE-DNDIRSVLQYLLDDVSDFLSTKFTASKEESDIIVKEGGCGHVLKAFIDFIS 593

Query: 556 QYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +      R     N   V + T+H +KGLE   VF+V          H     +      
Sbjct: 594 ERERENFRSRRHDNEESVTLTTIHQSKGLEWDTVFIVKANESEIPLLHEFNGVV------ 647

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                      ++ EE  RLLYVGMTRA  +L I      S+ +
Sbjct: 648 -----------------------KENGTSIEEERRLLYVGMTRARKKLFILYVLMDSSWQ 684

Query: 675 KSNQRTWYDMVYDS 688
                 +   +   
Sbjct: 685 MLQPSRFLKEIPHH 698


>gi|225454963|ref|XP_002277737.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1151

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 114/734 (15%), Positives = 220/734 (29%), Gaps = 156/734 (21%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E    I          +V  ++ + S +++       K      +       ++R +
Sbjct: 308 AASEMSGRIAAVAGKETAKEV-TVSTFHSFALQLCRSHAEKLG-RTSEFLIYGHGQQRRA 365

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDL------KEKLKKSQDEFIKIRDRFNTYKMFK 121
           ++ +  + +    +KN    ++ ++S D+      K+K KK Q    + +    T +  +
Sbjct: 366 IIEAVRIFETENSKKNNNGSKVGEESNDINSPQNFKDKSKKWQKFVTQAKASGKTPEECR 425

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
           +      +   +  +Y +  +    LD+ DLI  +  LL        +  +  +    ++
Sbjct: 426 NMGD--EIGASILGNYSKILRTCNALDYHDLISCSVKLLSDFPE---VFRECQESWKAVV 480

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDTS +Q+ ++R L                +  VGDE QSI+SF+GA+       +
Sbjct: 481 IDEFQDTSAMQYCLLRILAS-----------HNRITIVGDEDQSIFSFNGADVSGFNSFR 529

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +               I L  ++RST  IL     +                  +   + 
Sbjct: 530 KDFPNH--------KEIRLNKNYRSTRCILEAASSLIQNNMKRC--------QSKKVLTD 573

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                 V +                           +  S       +   I        
Sbjct: 574 NSTGSRVTI--------------------------KECHSEEAQCAFVVDKILE------ 601

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
           I S+          + +L R++    +     R  K  + I               ++ +
Sbjct: 602 ITSDDSVAKYSFGSVAILYRRQVSGKVFQTAFRDRKIPFNIH-----GVAFYRKKVVRAI 656

Query: 422 MALGRFILSQEDDLSFVCMLKSPL----------------FNFSEDDIFKICTQRHETET 465
           +A+ R  LS  DD S+  + K+ L                 + +    F        +  
Sbjct: 657 VAMLRTTLSGCDDGSYRQVFKALLPCDKEDKKRVIEHIDKISITRKCSFVSAASDIFSAK 716

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHI-----------AQFCSPHDFFTL--ILGAKK 512
           V    ++       K    +  I +L+H            A             ++    
Sbjct: 717 VSGTFKRSQLTQGRKVLFTLDMISKLVHREQSISAVITSVANMIPQKYLLEQRAVVDVDG 776

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRN-----------------EQNSYSSLQELISELE 555
           G  + ++   N++  VL   L+                      E      L+  I  + 
Sbjct: 777 G--KLLNE-DNDIRSVLQYLLDDVSDFLSTKFTASKEESDIIVKEGGCGHVLKAFIDFIS 833

Query: 556 QYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +      R     N   V + T+H +KGLE   VF+V          H     +      
Sbjct: 834 ERERENFRSRRHDNEESVTLTTIHQSKGLEWDTVFIVKANESEIPLLHEFNGVV------ 887

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                      ++ EE  RLLYVGMTRA  +L I      S+ +
Sbjct: 888 -----------------------KENGTSIEEERRLLYVGMTRARKKLFILYVLMDSSWQ 924

Query: 675 KSNQRTWYDMVYDS 688
                 +   +   
Sbjct: 925 MLQPSRFLKEIPHH 938


>gi|111115465|ref|YP_710083.1| exodeoxyribonuclease V, beta chain [Borrelia afzelii PKo]
 gi|110890739|gb|ABH01907.1| exodeoxyribonuclease V, beta chain [Borrelia afzelii PKo]
          Length = 1170

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 135/844 (15%), Positives = 250/844 (29%), Gaps = 107/844 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKKLEKIIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SL Q E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLTQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               N     + I L  + RS+  ++   +++F               TI H   +I    
Sbjct: 416  EIKNKINTDARIVLKTNHRSSKKLINPFNRIFDNI---------YNNTIVHDIEKIEFTN 466

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++   +   +         +       ++  +E      A     TI  ++   TI  N 
Sbjct: 467  SLPNQKNDNNNIFINGQEIEGINIITTNTENEEDIYQKTA----LTIKYLLTYGTITENN 522

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            K R I+ +DI VL R + +  LI    +              +          ++  + +
Sbjct: 523  KIRNIKMQDIKVLCRGKNEINLIDKALKKELIQTN-----KTQEKFLKTKEFSEIFYILK 577

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQHV 484
             +  ++   +   +L S + N   +    +  Q      E   E I            + 
Sbjct: 578  CLDRKQSFKALNYILNSKILNVPWNLQRILIKQDKIHLIEEFIENITALLEKNEITLINA 637

Query: 485  IKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTL 537
            I  I    +  I IA   +              +   I     E     + + E ++   
Sbjct: 638  INKITLEKNLWIKIANSTNDQKIIKWAENKINYKGLLIKEGKLENLKTYETVLEIISKIY 697

Query: 538  RNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
              EQ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL++
Sbjct: 698  HKEQ-NIQSLISTLESLIINEEPEEIEERINNINNDNESIELMTIHKSKGLSINIVFLIN 756

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T     S+   KK        +      +          + +  K+ +     E   + Y
Sbjct: 757  TSPIENSNIFSKKNCFYKFYQNGKIEYDFFK--------LEENKKYARLKILSEEKNIFY 808

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA   L I      S   K  +      +    H+    + I       K      
Sbjct: 809  VGATRAKFALFIT--KTNSITSKLLEIAKIFTIDGIKHDFNIYEFISQKKFNKKKNNTNT 866

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                  P+       +            +   +    + +          D         
Sbjct: 867  NTKLIPPKPIIKNMFKKEYTSSFSSLTAQAHHTTFYENYDFKNTNYEKETDLDDYDPTLE 926

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--------FITSYCTKNAKLWPAKEYK-N 823
                 +  + G I+H  ++ I         +         I     K        E + +
Sbjct: 927  ETL-PKGKDSGNILHAAMEEIIFSTAKDTFDNFKKNNIKIIEKQIQKINSNLNTIEIQNS 985

Query: 824  LLLSITRLLE------NPMMTTAMSCDSYSEVSVSG------------------KINCPK 859
            L   I  +L       N  +      +   E+                       ++   
Sbjct: 986  LTKMIYNILTYNIRAINARLCDI--EELQKEMEFLIKINPKFQKQKNLFNKHFEDLHIKL 1043

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKI 910
             D  + G +D I  +   I+I +YKT++    + ++             +  Q  IY   
Sbjct: 1044 SDGYLKGIVDLIFKANNKIYILDYKTNYLGKDKDDYNITNLENIIKKEYYDLQYKIYALG 1103

Query: 911  LKDS 914
            +K  
Sbjct: 1104 IKKI 1107


>gi|216263506|ref|ZP_03435501.1| exodeoxyribonuclease V, beta subunit [Borrelia afzelii ACA-1]
 gi|215980350|gb|EEC21171.1| exodeoxyribonuclease V, beta subunit [Borrelia afzelii ACA-1]
          Length = 1170

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 135/844 (15%), Positives = 250/844 (29%), Gaps = 107/844 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKKLEKIIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SL Q E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLTQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               N     + I L  + RS+  ++   +++F               TI H   +I    
Sbjct: 416  EIKNKINTDARIVLKTNHRSSKKLINPFNRIFDNI---------YNNTIVHDIEKIEFTN 466

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            ++   +   +         +       ++  +E      A     TI  ++   TI  N 
Sbjct: 467  SLPNQKNDNNNIFINGQEIEGINIITTNTENEEDIYQKTA----LTIKYLLTYGTITENN 522

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            K R I+ +DI VL R + +  LI    +              +          ++  + +
Sbjct: 523  KIRNIKMQDIKVLCRGKNEINLIDKALKKELIQTN-----KTQEKFLKTKEFSEIFYILK 577

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQHV 484
             +  ++   +   +L S + N   +    +  Q      E   E I            + 
Sbjct: 578  CLDRKQSFKALNYILNSKILNVPWNLQRILIKQDKIHLIEEFIENITALLEKNEITLINA 637

Query: 485  IKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFTL 537
            I  I    +  I IA   +              +   I     E     + + E ++   
Sbjct: 638  INKITLEKNLWIKIANSTNDQKIIKWAENKINYKGLLIKEGKLENLKTYETVLEIISKIY 697

Query: 538  RNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
              EQ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL++
Sbjct: 698  HKEQ-NIQSLISTLESLIINEEPEEIEERINNINNDNESIELMTIHKSKGLSINIVFLIN 756

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T     S+   KK        +      +          + +  K+ +     E   + Y
Sbjct: 757  TSPIENSNIFSKKNCFYKFYQNGKIEYDFFK--------LEENKKYARLKILSEEKNIFY 808

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA   L I      S   K  +      +    H+    + I       K      
Sbjct: 809  VGATRAKFALFIT--KTNSITSKLLEIAKIFTIDGIKHDFNIYEFISQKKFNKKKNNTNT 866

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                  P+       +            +   +    + +          D         
Sbjct: 867  NTKLIPPKPIIKNMFKKEYTSSFSSLTAQAHHTTFYENYDFKNTNYEKETDLDDYDPTLE 926

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN--------FITSYCTKNAKLWPAKEYK-N 823
                 +  + G I+H  ++ I         +         I     K        E + +
Sbjct: 927  ETL-PKGKDSGNILHAAMEEIIFSTAKDTFDNFKKNNIKIIEKQIQKINSNLNTIEIQNS 985

Query: 824  LLLSITRLLE------NPMMTTAMSCDSYSEVSVSG------------------KINCPK 859
            L   I  +L       N  +      +   E+                       ++   
Sbjct: 986  LTKMIYNILTYNIRAINARLCDI--EELQKEMEFLIKINPKFQKQKNLFNKHFEDLHIKL 1043

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKI 910
             D  + G +D I  +   I+I +YKT++    + ++             +  Q  IY   
Sbjct: 1044 SDGYLKGIVDLIFKANNKIYILDYKTNYLGKDKDDYNITNLENIIKKEYYDLQYKIYALG 1103

Query: 911  LKDS 914
            +K  
Sbjct: 1104 IKKI 1107


>gi|170696350|ref|ZP_02887480.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
 gi|170138756|gb|EDT06954.1| UvrD/REP helicase [Burkholderia graminis C4D1M]
          Length = 738

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 106/731 (14%), Positives = 215/731 (29%), Gaps = 139/731 (19%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQ 60
            R  L +      I              +  +       G   + + A+   L  A    
Sbjct: 97  RRAALEMTRRVTRIATAALGTRAALAQGL-TWAGTFHSVGARLLREYAELIGLAPAFTIN 155

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++        + ++     +       +  ++  +     ++ D  + +   
Sbjct: 156 DREDSADLMNLVRHELGLSAKERRFPAK--STCFAIYSRVVNTGASLGQVLD--SAFPWC 211

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +   A L +   L A Y +AK+K  VLD++DL++  + +  +  ++A     +    +H+
Sbjct: 212 REWEADLRM---LFAAYVDAKQKQSVLDYDDLLLYWSHMAAEPAIAAD----LSVRFDHV 264

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF GA  + +L  
Sbjct: 265 LVDEYQDTNRLQASILLAL----------KPDGRGLTVVGDDAQSIYSFRGATVRNILDF 314

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                          + I L  ++RST  IL   + V  +       +  +      R  
Sbjct: 315 PAQF-------DPPATQITLERNYRSTQPILAASNAVIELASERYTKNLWTDKASAQRP- 366

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                              L   +  +  AR +   +       
Sbjct: 367 ----------------------------------RLVTVADEADQARYVVEQVLEAREQG 392

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     ++ K   VL R    +  +            I  V        D + +KD
Sbjct: 393 ----------MKLKSQAVLFRAAHHSAALEIEL----TRRNIPFVKFGGLKFLDSVHVKD 438

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-----------------HET 463
           ++A+ R+  +  D ++   +++  L         K+  +                   E+
Sbjct: 439 VLAVLRWAENPRDRVAGFRVVQ-LLPGVGPATAAKVLDEIVARAGAGVAVGNPAGTVAES 497

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                     A     + Q        L+               +  +           +
Sbjct: 498 LANSAANALAAFAPPPRAQEDWHPFVRLMSSVYGRQTPWPAEFEMVRRWYEPHLARNHED 557

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHT 579
             I   D      + +   +Y+S +  ++EL   PP      S     + + + + T+H+
Sbjct: 558 AAIRHADVLQ---MESIAGTYASRERFLTELTLDPPDATSDESGVPLIDEDHLILSTIHS 614

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKG E   VF+++                                               
Sbjct: 615 AKGQEWRNVFVLNGVDGCIPSDLGTGS--------------------------------- 641

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +   +E  RLLYV MTRA + L I          +++    +     +      +  + 
Sbjct: 642 -EDEIDEERRLLYVAMTRAKEDLHIVVPQRFYVHNQTHLGDRHVWASRTRFIPAHLMPLF 700

Query: 700 LTNSINKDEWI 710
              +  +    
Sbjct: 701 DAYAWPRVPVA 711


>gi|118466579|ref|YP_883296.1| helicase, UvrD/Rep family protein [Mycobacterium avium 104]
 gi|118167866|gb|ABK68763.1| helicase, UvrD/Rep family protein [Mycobacterium avium 104]
          Length = 1042

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 117/1019 (11%), Positives = 263/1019 (25%), Gaps = 179/1019 (17%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
            + +     P  +   +      +         +  +   +   +   +     L +  L
Sbjct: 72  ALLRSAGAGPAVREPLVRTVHGYAYAVLRRAAERAGEAPPRLVTSAEQDAIIRELLAGDL 131

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST-----LASLTL 129
                P+         + +        + ++   +  +R    +  +             
Sbjct: 132 --ADGPRAATAWPAALRPALSTAGFATELRNLLARCAERGVDPQALERLGRRCRRPEWVA 189

Query: 130 AKYLNAHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           A      YE+                   L   +L+    +      V A +       I
Sbjct: 190 AGQFARQYEQVMLLRAAVGTAAPEATTPALGAAELVGAALEAFA---VDAELLAAERGRI 246

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             +L+D+ Q        ++R L     +              GD  Q+++ F G +P  +
Sbjct: 247 RVLLVDDAQQLDPQAARLVRVLAAGADLA----------LIAGDPNQAVFGFRGGDPGSL 296

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L                   + L  S R    +   V  V      A  L   S      
Sbjct: 297 LD-------------GAAPAVTLTTSHRCAPAVARAVSGV------AGRLPGSSAGRRIE 337

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            +        V+L     ++  +  +  + +                             
Sbjct: 338 GAGPGEGSVAVRLAASAHAEAAAIADALRRAHLVD------------------------- 372

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFILTDHL 416
                        +    + V+VR     P              + V        L +  
Sbjct: 373 ------------GVPWSQMAVIVRS---VPRAGARLPRALAAAGVPVTAPAASGPLAEQP 417

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----------TETV 466
           A++ L+ +        D    + +L  P+       + ++                 E +
Sbjct: 418 AVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLRRNLQRANAGRPPGDFAELL 477

Query: 467 YEYIQKFANCGISKFQHVIKYIHEL----IHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
            E +   A    + F+ + +    L            P             +++++S   
Sbjct: 478 VEALTGTAPPPGALFRALRRVRAVLDAAGRCHRDGQDPRYILWAAWHRSGLQRRWLSVSE 537

Query: 520 ---RFGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRA-HSANHNE 571
                  +    LD      + T     + S +SL+ L+  +             A   +
Sbjct: 538 RGGPAAAQAGRDLDSVTALFDITDDYVSRTSGASLRGLVEHVAALQLPGAGPVPVATAEQ 597

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +++ H A G E   V +      ++ +   +   +      D    +           
Sbjct: 598 VSVLSAHAALGREWDFVVIAGLQDGLWPNTVPRGGVLGTQRLLDVLDGV----------- 646

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----SNQRTWYDMVYD 687
                  ++     E  RLL   M RA  +L++    + ++             Y++   
Sbjct: 647 --SADASVRAPLLAEERRLLVAAMGRARQRLLVTAVDSDTDGSDHEAALPSPFCYEIAQW 704

Query: 688 SFHNDERVKKIKLTNS-----------------INKDEWIAYEWSTHHPENTPLEREETI 730
           +  + E      ++                            +      +   L +    
Sbjct: 705 AGEDVETAALQPVSAPRVLSAAALVGRLRGVVCAPDGAVDELDRRCAATQLARLAQAGVP 764

Query: 731 -KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF-------NR 782
                    +     +       +   L PST+ T     L  L   +            
Sbjct: 765 GADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQTLTDCPLRWLAERHGGTDPRDLRSAI 824

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
           G ++H L+      P         ++  ++          N L     +LE      A +
Sbjct: 825 GSVVHALIAQPHRSPAELVAELDRAW--RHLPFAAQWHSDNELARHRAMLEAFAQWRANT 882

Query: 843 CDSYSEVSVSGKIN-----CPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHI 896
             + +EV V  +I+        +++ + GR+D++       + I + KT      + +  
Sbjct: 883 RGALTEVGVEVEIDGTLSTGDGREVRLRGRVDRLERDAAGRLVIVDVKTGKTPVSKDDAQ 942

Query: 897 PYTHIAQLSIYEKILKDSYPN------KSLVCLLIYVSEPK---VFIIPQNKLNKAFAE 946
                AQL++Y+  +            +     L+YV +     V    Q+ L  A A+
Sbjct: 943 Q---HAQLALYQLAVAHGLLGAAGGDAEPGGARLVYVGKAAASGVVEREQDPLTAAAAD 998


>gi|126667776|ref|ZP_01738743.1| ATP-dependent DNA helicase [Marinobacter sp. ELB17]
 gi|126627724|gb|EAZ98354.1| ATP-dependent DNA helicase [Marinobacter sp. ELB17]
          Length = 698

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 88/552 (15%), Positives = 173/552 (31%), Gaps = 108/552 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       YE+ K+    LDF+DL++     L K      I   +  +  HI++DE QD
Sbjct: 194 RIVAKALVQYEKDKRAGGYLDFDDLLLLPARALVKFP---KISEGLSYQHTHIMVDESQD 250

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+L Q+ ++R + +            + +  VGD+ QSIY + GA+   + R  +  +  
Sbjct: 251 TNLAQYLMVRQIGQH----------HKNVVMVGDDDQSIYRWRGAKIANLRRFIKDFE-- 298

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +  L  +FRS A I+     +    +     S                 G 
Sbjct: 299 -------APVARLEQNFRSHAHIVDSASNLIKHNQKRLAKS----------PFSATHEGE 341

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V   +   +  D                         +AR++   + ++           
Sbjct: 342 VPRVQINETDRD-------------------------MARQMVRQVKDLNSQG------- 369

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +   DI +L R  + T ++    +       I           +   I+ + A  R 
Sbjct: 370 ---VPLNDIAMLYRTNRMTTILEPAFK----QAGIPYSVVGGMSFYERAEIQAVAACARI 422

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET------VYEYIQKFANCGISKF 481
           +  + DD   +  L+  +    +  +     +    +       ++E  Q++   GI   
Sbjct: 423 VW-KHDDWQALKSLQPYIDGLGKKGMEDTIDRLKADDMNMVLFLLHEAPQQYGKGGIRLH 481

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAK-KGRQQFISR-----FGNEVIDVLDEFLNF 535
           + V       I  +   S +     ++     G    + R        +  D LD+ L+ 
Sbjct: 482 EFVTGVFKSSIVGSTDQSQYQIAQRLIQWMKDGPMAILDREKDDVLRVKRSDNLDQLLDE 541

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               E       ++    + + P +   A     + V + T+H +KGLE P V +     
Sbjct: 542 LSHAE------PEDFFQYMIEAPLSDYLASQEGTDRVTMSTIHRSKGLEWPHVMIAGFSD 595

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +                            ++        ++       EE   L YV  
Sbjct: 596 GLMPLDQGL------------------LSGRAATAPTPADLEDDDGGRPEEERCLAYVAS 637

Query: 656 TRASDQLIICKH 667
           TR+   L +   
Sbjct: 638 TRSMQTLTLNHA 649


>gi|39998356|ref|NP_954307.1| DNA helicase II [Geobacter sulfurreducens PCA]
 gi|39985302|gb|AAR36657.1| DNA helicase II, putative [Geobacter sulfurreducens PCA]
          Length = 1078

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 99/678 (14%), Positives = 188/678 (27%), Gaps = 135/678 (19%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
                +     P      + + +  +L    G       A T    +  +  E   ++   
Sbjct: 474  DASRVLVAAGPGTGKTYTLVARLAALLAAPGTDPARVCAITFTNRAAAEVRERLAAVAGE 533

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                             + ++ PD      +S++    +R  F    + + +  +  +A 
Sbjct: 534  AAGQVFVGTFHRFCLDWLRREEPDRVVVGDESRERL--LRRLFPEIGVRERSGLAAEIAD 591

Query: 132  YLNAH-----------YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +L+             Y +   +   +D +D++      L+  +     R ++   + H+
Sbjct: 592  FLHRDNGGDAPEPVRFYLDELARRGAMDLDDVVPALVRRLRGDET---FRRRVCAGVAHL 648

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
             +DE QD +  Q+ ++  L E+            T+FA+GD  Q+IY F G++P    R 
Sbjct: 649  FVDEFQDLNAPQYALVEILGEEA-----------TIFAIGDPDQAIYGFRGSDPSFFFRF 697

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
              +              ++L  ++RS A ++     V +      G+S   TT       
Sbjct: 698  ADL---------PATRRLDLSRNYRSAAPLVEAASAVIAHNRLRSGISLTPTT------- 741

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
               + G ++L+       +                          A  I   I  ++G  
Sbjct: 742  --AREGAIELYRAPTPAAE--------------------------AEFIVRRIEELMGGI 773

Query: 361  TIFSNGKKR------VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            + FS    R           DI +L R  +             +   I            
Sbjct: 774  SSFSIASGRGGDQDSRRSFGDIAILYRLARQA----DELANALDRRGIPFQLVGAVPYFL 829

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--YIQK 472
                       R       +L+    L   L    E  I ++      T          +
Sbjct: 830  GPVAGAATRFVRAAA-GSTELADWLALAQDLPGVGEGTIRRLEEALPLTGDFPALVAGVE 888

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                   +   +   +     +A            L              ++        
Sbjct: 889  LPPPVAHRMAELTALLERFRSVAGREGIAPALGEALTLFG---------TDQGHADCRRL 939

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            L             +      L +Y              V +MT+H +KGLE PVVFL  
Sbjct: 940  LALAGSF----GRDIVAFDRHLREYAAETVYD--ERAEAVALMTLHASKGLEFPVVFLAG 993

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                +      + + +                                    EE  RL Y
Sbjct: 994  CEEGLIPCTLWRDVDV------------------------------------EEERRLFY 1017

Query: 653  VGMTRASDQLIICKHSNT 670
            VGMTRA + L++   S  
Sbjct: 1018 VGMTRAKETLVLSASSER 1035


>gi|168701104|ref|ZP_02733381.1| UvrD/REP helicase [Gemmata obscuriglobus UQM 2246]
          Length = 1127

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 135/936 (14%), Positives = 267/936 (28%), Gaps = 149/936 (15%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMET------GNPTILKKAQTLQQASQTQ 60
            LS  +    I   +        S       L +        G     K           +
Sbjct: 254  LSAKDLAARIRAAVGDKATAVWSGTFHAFGLELLRKHGHVLGMEGPPKLLDRTDSLMFLE 313

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             +  +  L     L +     K+I+      K   +  +          +    +     
Sbjct: 314  QLLPQLPLNHYLDLYEPARALKDILNAIGRAKDDLVTPERYGELAH--AMLASASDPDAI 371

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                 +L +A  + + YE   +    +DF DL+    +LL+       +R  +  +  HI
Sbjct: 372  TRAEKALEVAN-VYSVYERELRSQWRVDFGDLVARPVELLRAHPE---VRDAVRDQYRHI 427

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QD +      ++ +                 + VGD +Q+IY F GA P  + R 
Sbjct: 428  LVDEYQDMNRASAHFLKEIVTPKAGP----------WVVGDVRQAIYRFRGASPLNMSRF 477

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            ++             ++ +L +++RS   I+    + F     A  L+ +S       + 
Sbjct: 478  EQDFP--------GAAVTDLTVNYRSGGKIVRAF-EAFGQKMTAAPLAPNS----GLTAH 524

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            R    G V                                S    A  IA  I       
Sbjct: 525  RGETNGNV--------------------------LYDVAVSREAEAEGIAQAIKKRQSDG 558

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                      +  +  +VL R       +            +  +        +   ++D
Sbjct: 559  ----------VPFRHQVVLARSHTTLARLAGHLE----RSGVPCLYFG--DFFERPEVRD 602

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            L++L   + S++  +  + + + P +     DI K+   R E         + A+     
Sbjct: 603  LLSLLSVV-SEKRGVGLLRVAQMPQYAVPPADIIKVVEWRREQAISMLSALRRADEICDL 661

Query: 481  FQHVIKYIHEL----IHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEF 532
                   I  L     H +   SPH F T  L       + +         +    + + 
Sbjct: 662  TDVGRAGIKLLVFDTRHWSWTVSPHRFLTEYLFGSGEHVRLLLAGNTVQDQQRRLAVYQL 721

Query: 533  LNFTLRN---EQNSYSS-LQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLE 584
            L F       E+          +  L       +     A + + + VR+MTVH +KGLE
Sbjct: 722  LQFAFAFKPPEKEDPKHAFLNHVRRLTILDEEKQLRQLPAAAGDIDAVRLMTVHASKGLE 781

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV LV     +F   +       P+        +                        
Sbjct: 782  FPVVHLVSLAKTIFPLGNRSDPCPPPAGMIAADDLLTAT--------------------- 820

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             E   L +VGM+RA D L + +       K+        +        +     K     
Sbjct: 821  AEEESLFFVGMSRAKDVLHLSRSETNGAVKRGPSSFLEHVTAHLPKAVDAAAGWKNLGHQ 880

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
             K                         +L          +  I+     P          
Sbjct: 881  AKGR----------------------PRLAAAAVTGAWSYYAIETYDECPRRYYY----- 913

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                 L +   +         +H  L  + ++P+   ++                   + 
Sbjct: 914  DHALALNARDEEGPYLQFQSALHASLAWLRSVPQAAERSAGIR-AQFELDWSEHGPQGHA 972

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
                 R + + M+  A++      + V   +  P+   +++ R D I  +   + I   K
Sbjct: 973  FEPFYRGIADKMIANALAVMDGQALPVDRTVTLPETGAVVNCRADHIEATSAGVVIRRLK 1032

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
            T     +E E +   +     +++  + +++P + +
Sbjct: 1033 TSRLAKKETEKL--RYT----LWQVAVGNAHPGQEI 1062


>gi|260429772|ref|ZP_05783748.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45]
 gi|260419255|gb|EEX12509.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45]
          Length = 680

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 94/539 (17%), Positives = 164/539 (30%), Gaps = 118/539 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            K L   Y  AK++  VLD++DL++   +++     +A I        +H+LIDE QDT+
Sbjct: 189 LKQLFGAYVTAKQEQNVLDYDDLLLAWAEVMSDEGFAAHI----GGAWDHVLIDEYQDTN 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++ +L              R L  VGD+ QSIY+F  A  + +L        RA 
Sbjct: 245 RLQARILMAL----------KPDGRGLTVVGDDAQSIYAFRAATVRNILDFPDAFSPRAD 294

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +I L  ++RST  IL   + V  +       +  +T     R           
Sbjct: 295 -------VITLDRNYRSTQPILEAANAVIGLARERYTKNLWTTRASDARP---------- 337

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                     +   ++ +  AR     I     T T        
Sbjct: 338 -------------------------RIVTVATEADQARHFVDRILEDRETGT-------- 364

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + +D  VL R    +               +  V        D   +KDL+A+ R   
Sbjct: 365 --RLRDQAVLFRTSSHS----VQLEAELTRRNVPYVKFGGLKFLDSAHVKDLLAVLRLAR 418

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +  D ++   +L+            +I             +++      +       ++ 
Sbjct: 419 NPRDRVAGFRVLQLMP-GIGPKAAGRILDALDLAADPLTVLREIPPPARAA-ADWPAFVE 476

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            +   A + +              R   +          L +              S + 
Sbjct: 477 AMAARADWPAGLGLARAWYEPHLDR---LHEDAETRHADLMQLEQIAAGF-----PSAEA 528

Query: 550 LISELEQYPPTIKRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            ++EL   PP      +     + + + + T+H+AKG E   V+L++             
Sbjct: 529 FLTELTLDPPDATSDRAGKPLQDEDYLILSTIHSAKGQEWRSVYLLNAVDGCIPSDLGTG 588

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                  EE  RLLYV MTRA D L +
Sbjct: 589 SS----------------------------------HELEEERRLLYVAMTRAKDHLTL 613


>gi|320095790|ref|ZP_08027434.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977274|gb|EFW08973.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 1196

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 112/856 (13%), Positives = 229/856 (26%), Gaps = 150/856 (17%)

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI 153
            + ++ L+    +  +I    +T +      A           ++  K++  +LDF D +
Sbjct: 197 EEARDALEGFGRDLEQIGATNDTARKTLRANARRLAYLGPVEEFQRRKREGGLLDFSDQL 256

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +    ++++   +  +  ++  E   +L+DE QDTS+IQ E++  L  D           
Sbjct: 257 VLATRIVRE---APEVSAQVRDEFQAVLLDEFQDTSVIQMELLSLLFHD----------- 302

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             + AVGD  Q+IY + GA    + R     Q       Q    + L  ++R+  +IL  
Sbjct: 303 HAVTAVGDPNQAIYGWRGASASSLERFLDRFQD---GPAQPGQTLTLSTAWRNDRNILRA 359

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            ++V +           +  +   R+      G V +         +     + +  +  
Sbjct: 360 ANRVAAPLREHS----RAAKSPVLRARPGAGEGRVDV---------AYTQDYRSALGAVV 406

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           D +    +                           R  +     VL R+R D P +    
Sbjct: 407 DFVSAHRAR------------------------GTREGKRPTTAVLCRRRSDFPYVDMAL 442

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
           R       +         L D  +++D  A        E       +L     +    D+
Sbjct: 443 RE----AGVPTQIVGLGGLLDQPSVQDARAALVLADDVEASPWLARLLAG--IDLGAADL 496

Query: 454 FKI-----CTQRHETETVYEY----------------------IQKFANCGISKFQHVIK 486
             +        R E    +                            +   + + + +  
Sbjct: 497 VALGDWARHLAREEGRDPHRAVLLDAVDNPPEPGWSASGGARGRPAISGEAVRRVRTLGS 556

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQN-SY 544
            +  +   A   S  +     +         +S          LD F++     E     
Sbjct: 557 RLRAVRAGAGR-SVVEQVERAVSIMGILDDVVSDPLAAGGRAALDAFVDVAASYEAEVPG 615

Query: 545 SSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +SL   ++ L+                +   V+IMTVH +KGLE   V +      VF  
Sbjct: 616 ASLSSFLAYLDMADERENGLEAPVSEPDPQAVQIMTVHASKGLEWDGVVVFAMDDGVFPS 675

Query: 601 KHIKKMHIMPSLNDDPGIPIWI---------------------------PQSKSRNNIVS 633
              ++              +                             P +  +  +  
Sbjct: 676 HSKRRTVDWRDGPPTDSGWVRDASALPYPLRGDCMDLPDFDLDVEGEAKPSATFKKWLEG 735

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS----- 688
           D    L +  + E  RL YV MTRA    ++               + Y M   +     
Sbjct: 736 DYEARLGEHAEREERRLAYVAMTRARSAQLLVGSWMYRTGASPRHPSRYLMEAHAELFAG 795

Query: 689 ---------FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                                 +        A          T           +    +
Sbjct: 796 AGAGVGAVSGEGGGTSGTGVGPSRGASGMAGAVPGEDGGASGTGGSAAPGAGGPLVVPGV 855

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ---------TFNRGLI-IHKL 789
              L  P  ++     +          +    S  +  +            R    +  L
Sbjct: 856 GSALVVPRPDEEELGRLALTEAEAAFPEGPGPSRAAVARAAAQVRREIASMRADADVFDL 915

Query: 790 LQVIFTLP--EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
           L  +   P              +  A +    + +    S++ LL++P    A +     
Sbjct: 916 LAQMEGEPGVADTVALLEEHRVSLEAPVVEIWQDRVPATSVSELLDDPQ---AFAARVRR 972

Query: 848 EVSVSGKINCPKKDII 863
            +      +     + 
Sbjct: 973 PMPAEPSESSALGTVF 988



 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/306 (8%), Positives = 80/306 (26%), Gaps = 38/306 (12%)

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                 +  + +                 +V++   +   + D +         P      
Sbjct: 870  GRLALTEAEAAFPEGPGPSRAAVARAAAQVRREIASMRADADVFDLLAQMEGEPGVADTV 929

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
                  ++  E  + +     +        + +P     + +  + +  S++     G +
Sbjct: 930  ALLEEHRVSLEAPVVEIWQDRVPATSVSELLDDPQAFAARVRRPMPAEPSESSAL--GTV 987

Query: 786  IHKLLQV---------------------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
             H   +                      + +L                       E   L
Sbjct: 988  FHAWAERQLHLASPEPAGGDPTAPGDGPLGSLLPADEAGAGGGVDASLGGGPQVVEEAAL 1047

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVS------VSGKINCPKKDIIISGRIDQISISQQ-- 876
                   L   ++    +    +E++      +    +     + + GRID +       
Sbjct: 1048 DERSRAKL--EVLRANFTEFVATELAGCSPVGIEEPFSVEVGGVSVQGRIDAVFERTGGG 1105

Query: 877  --NIFIFEYKTHHHVPQEIEHIPYTH-IAQLSIYEKILKDS--YPNKSLVCLLIYVSEPK 931
                 + ++K+   V +  +     + I QL +Y +        P  ++   + +++ P 
Sbjct: 1106 GPRFVVIDWKSGRAVDRRTDPAKLRYFITQLRLYRRAWSQRAGVPESAVEARVAFLAGPA 1165

Query: 932  VFIIPQ 937
             F + Q
Sbjct: 1166 SFTVEQ 1171


>gi|5734491|emb|CAB52698.1| DNA helicase [Prochlorococcus marinus]
          Length = 519

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 117/336 (34%), Gaps = 52/336 (15%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y +A   N  LD           ++    S   R    +   H+L+DE QD
Sbjct: 206 RLTAKAYRVYRKALAANNALD---FDDLLLLPVQLLQQSKETRDYWHKRFKHLLVDEYQD 262

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           T+  Q+E+I+ L  +    ++      R++F VGD  QSIYSF  A+ + ++  ++    
Sbjct: 263 TNWTQYELIKLLVTNGEPPQSFKAWRGRSVFVVGDADQSIYSFRAADFRILMGFEQDFGA 322

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
            +       ++++L  ++RST++IL   + + S  +        +T              
Sbjct: 323 NSKGNY-DSNVVKLEENYRSTSNILEAANSLISNNKERIDKVLKATR------------- 368

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                           +      T   D + +       A  + + I           + 
Sbjct: 369 ---------------SSGDLIKLTRCDDEIAE-------AEAVVHRIR--------LIDA 398

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   D+ +L R    + +I          + I  +        D   +KD++A  +
Sbjct: 399 ANNNLNWSDVAILYRTNAQSRVIEESL----VRWNIPYIVVGSLRFYDRREVKDILAYLK 454

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            +++  D +S + +L  P     +  I K      +
Sbjct: 455 LLINPSDSVSLLRVLNVPKRGIGKTTIQKFTDAASQ 490


>gi|257888982|ref|ZP_05668635.1| ATP-dependent DNA helicase UvrD [Enterococcus faecium 1,141,733]
 gi|257825038|gb|EEV51968.1| ATP-dependent DNA helicase UvrD [Enterococcus faecium 1,141,733]
          Length = 744

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 91/586 (15%), Positives = 192/586 (32%), Gaps = 114/586 (19%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +++      +  D  +       +     L   L    +E K++  +L+F D++ N    
Sbjct: 244 IEEMIQLVKEKYDSIDKNARQPISERLYGLLTEL----QEQKRRQQLLEFNDVLQNLKSA 299

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L+  +    I++ I Q+ +++ IDE QDT+ +QWE+++ +T++         +   L  V
Sbjct: 300 LENEE----IQHYIGQKYDYLFIDEFQDTNPLQWEIVKRMTKE---------NGIKLIVV 346

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIY F G+EP  +   ++               + L  ++RS A I+   +++ S
Sbjct: 347 GDDDQSIYGFRGSEPAYIKNFEKEYPT---------KTLFLLTNYRSRAAIVQGANRLIS 397

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             +N            +       + G ++ +    ++ +S                   
Sbjct: 398 YNKN--------DRIPKAMIPAQKEAGVMEAYLFSDTKAES------------------- 430

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                  + +   I + I           +  + K+ ++L R    T  +          
Sbjct: 431 -------QWLISQIQSFIQ----------KNGKYKESIILYRSASQTQQLVQSLLKTNIP 473

Query: 400 YKI----SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL---FNFSEDD 452
           + +       G            K +    +   + +        L   L       + +
Sbjct: 474 FVLEADSPYEGIFGIKSFQQFYQKIVHW--QTAQNPQKKNQTYQQLLRQLMVDCYLKKSE 531

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
             +  + +++   + +YI        SK   + ++   L    Q    +      L    
Sbjct: 532 CDQYFSPKYQNTAITDYILSVRPNLKSKSAEIRQFEEALRKTDQHQEVYSLVQSYL---- 587

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH--- 569
              +          + + E +            S+Q L  E +     +K    A     
Sbjct: 588 HLPRIAKEIDQSDQEWIREEVKQHATF-----RSIQALSQETQATAKELKTRLIAYRQGK 642

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + + I ++H +KGL    VFL+        +    +  ++ S                 
Sbjct: 643 LDALCIQSIHKSKGLSYRNVFLIGCNEGSLPYNGATEKKVIDSNEIKAEPV--------- 693

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                        +T EE  RL YV MTRA ++L +C     +  K
Sbjct: 694 -------------TTIEEERRLFYVAMTRARNRLYLCVPQMKNTRK 726


>gi|227551107|ref|ZP_03981156.1| UvrD Rep family helicase [Enterococcus faecium TX1330]
 gi|293378647|ref|ZP_06624807.1| UvrD/REP helicase [Enterococcus faecium PC4.1]
 gi|227179768|gb|EEI60740.1| UvrD Rep family helicase [Enterococcus faecium TX1330]
 gi|292642778|gb|EFF60928.1| UvrD/REP helicase [Enterococcus faecium PC4.1]
          Length = 744

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 89/553 (16%), Positives = 184/553 (33%), Gaps = 110/553 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L    +E K++  +L+F D++ N    L+  +    I++ I Q+ +++ IDE QDT+ +Q
Sbjct: 273 LLTELQEQKRRQQLLEFNDVLQNLKSALENEE----IQHYIGQKYDYLFIDEFQDTNPLQ 328

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           WE+++ +T++         +   L  VGD+ QSIY F G+EP  +   ++          
Sbjct: 329 WEIVKRMTKE---------NGIKLIVVGDDDQSIYGFRGSEPAYIKNFEKEYPT------ 373

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                + L  ++RS A I+   +++ S  +N            +       + G ++ + 
Sbjct: 374 ---KTLFLLTNYRSRAAIVQGANRLISYNKN--------DRIPKAMIPAQKEAGVMEAYL 422

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
              ++ +S                          + +   I + I           +  +
Sbjct: 423 FSDTKAES--------------------------QWLISQIQSFIQ----------KNGK 446

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKI----SVVGNDRFILTDHLAIKDLMALGRFI 428
            K+ ++L R    T  +          + +       G            K +    +  
Sbjct: 447 YKESIILYRSASQTQQLVQSLLKTNIPFVLEADSPYEGIFGIKSFQQFYQKIVHW--QTA 504

Query: 429 LSQEDDLSFVCMLKSPL---FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
            + +        L   L       + +  +  + +++   + +YI        SK   + 
Sbjct: 505 QNPQKKNQTYQQLLRQLMVDCYLKKSECDQYFSPKYQNTAITDYILSVRPNLKSKSAEIR 564

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           ++   L    Q    +      L       +          + + E +            
Sbjct: 565 QFEEALRKTDQHQEVYSLVQSYL----HLPRIAKEIDQSDQEWIREEVKQHATF-----R 615

Query: 546 SLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           S+Q L  E +     +K    A      + + I ++H +KGL    VFL+        + 
Sbjct: 616 SIQALSQETQATAKELKTRLIAYRQGKLDALCIQSIHKSKGLSYRNVFLIGCNEGSLPYN 675

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              +  ++ S                              +T EE  RL YV MTRA ++
Sbjct: 676 GATEKKVIDSNEIKAEPV----------------------TTIEEERRLFYVAMTRARNR 713

Query: 662 LIICKHSNTSNEK 674
           L +C     +  K
Sbjct: 714 LYLCVPQMKNTRK 726


>gi|296424640|ref|XP_002841855.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638105|emb|CAZ86046.1| unnamed protein product [Tuber melanosporum]
          Length = 1031

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 95/609 (15%), Positives = 172/609 (28%), Gaps = 142/609 (23%)

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +LIDE QDT+L+Q+E+++ L                +  VGD  QSIY F  AE + + R
Sbjct: 231 VLIDEFQDTNLVQFELMKLLA----------WKRERITIVGDPDQSIYGFRAAEIRNLSR 280

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             R   +          ++ L  ++RS+A IL    +V     +        + ++  R 
Sbjct: 281 MVRAYPQTL--------VVHLEQNYRSSASILLAALEVIEQDHDRPKKPLTPSHSVGTRP 332

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                                    SA + A  I   I      
Sbjct: 333 VLRRIP-----------------------------------SAFLEASWIVSEIQR---- 353

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                     +++  DI +LVR    T  I            ++          D + IK
Sbjct: 354 ---VRAMTGGMVELGDIAILVRSANLTRNIETSF----VKAGVAYKMVGGLRFYDRVEIK 406

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQ------- 471
            L+   R + +  ++ +   ++ +P     +  I   +       ++V+E I+       
Sbjct: 407 TLLDYLRIVQNPGNNDALTRIVNTPSRKVGDTTIKALLDEADKRAKSVWEIIRTGLGGIW 466

Query: 472 ---KFANCGISKFQHVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
              + A          +  I     +L    Q     D    ++            +  +
Sbjct: 467 KDVRIAKAAEKGLGDFMGIILSTQKQLEGDEQGKGLVDVVEFLMRRIGYEDYLRRSYPED 526

Query: 525 VID---VLDEFLNFTLRNEQNSYSS----------------------LQELISELEQYPP 559
                  + E L+     E+                           L   +S       
Sbjct: 527 FDAKWSNVSELLSQAQEVERLDDDEDTLPDIDGLPQSQVEQSRLQLVLDRFLSNTALANE 586

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                 +    +V I T+H +KGLE P+VF+         H                   
Sbjct: 587 VKGDDETVKQGQVTISTIHASKGLEWPIVFIPAVYQGSIPHS------------------ 628

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                               +    +E  RLLYV MTRA   L +      S   K+   
Sbjct: 629 --------------------RADDTDEERRLLYVAMTRAQALLYMSCAVRNSQGDKTKLS 668

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
            +          D R   +  ++  +    +  E  +       +++      L D+   
Sbjct: 669 QFLTHRSLYPLLDSRGPTLGFSSVQSVSGILGRECPSEVHIQIAVDKSGVASTLDDQFPD 728

Query: 740 PKKLFSPIK 748
              L S  +
Sbjct: 729 RDPLESDSE 737


>gi|293570130|ref|ZP_06681209.1| ATP-dependent DNA helicase [Enterococcus faecium E1071]
 gi|291587329|gb|EFF19214.1| ATP-dependent DNA helicase [Enterococcus faecium E1071]
          Length = 728

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 95/587 (16%), Positives = 201/587 (34%), Gaps = 115/587 (19%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           E++ +   E     D+     + +     LT         +E K+   +L+F D++ N  
Sbjct: 229 EEMVQLVKEKYDSIDKNARQPISERLYGLLT-------ELQEQKRSQQLLEFNDVLQNLK 281

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
             L+  +    I++ I Q+ +++ IDE QDT+ +QWE+++ +T++         +   L 
Sbjct: 282 SALENEE----IQHYIGQKYDYLFIDEFQDTNPLQWEIVKRMTKE---------NRIKLI 328

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIY F G+EP  +   ++               + L  ++RS A I+   +++
Sbjct: 329 VVGDDDQSIYGFRGSEPAYIKNFEKEYPT---------KTLFLLTNYRSRAAIVQGANRL 379

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            S  +N            +       + G ++ +    ++ +S                 
Sbjct: 380 ISYNKN--------DRIPKAMIPAQKEAGVMEAYLFSDTKAES----------------- 414

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                    + +   I   I           +  + K+ ++L R    T  +        
Sbjct: 415 ---------QWLIKQIQTFIQ----------KNGKYKESIILYRSASQTQQLVQSLLKTN 455

Query: 398 NDYKI----SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--FNFSED 451
             + +       G        H   + ++     +  Q+ + ++  +L+  +      + 
Sbjct: 456 IPFVLEADSPYEGIFGIKSFQHFY-QKIVHWQTALNLQKKNQAYQQLLRQLMADCYLKKS 514

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
           +  +  + +++   V +YI   +    SK   + ++   L    Q    +      L   
Sbjct: 515 ECDQYFSPKYQNIAVADYILSISPNLKSKSAEIREFEEALRKTDQHQEIYSLVQSYL--- 571

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-- 569
               +          + + E +             LQ L  E +     +K    A    
Sbjct: 572 -HLPRIAKEIDQSDQEWIREEVKQHATF-----RRLQALSQETQATAKELKTRLIAYRQG 625

Query: 570 --NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + + I ++H +KGL    VFL+        +    +  ++                  
Sbjct: 626 KLDALCIQSIHKSKGLSYRNVFLIGCNEGSLPYNGATEKKVIDFNE-------------- 671

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                   IK    +T EE  RL YV MTRA ++L +C     ++ K
Sbjct: 672 --------IKAESVTTIEEERRLFYVAMTRARNRLYLCVPQMKNSRK 710


>gi|257893863|ref|ZP_05673516.1| UvrD/REP helicase [Enterococcus faecium 1,231,408]
 gi|257830242|gb|EEV56849.1| UvrD/REP helicase [Enterococcus faecium 1,231,408]
          Length = 728

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 91/586 (15%), Positives = 192/586 (32%), Gaps = 114/586 (19%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +++      +  D  +       +     L   L    +E K++  +L+F D++ N    
Sbjct: 228 IEEMIQLVKEKYDSIDKNARQPISERLYGLLTEL----QEQKRRQQLLEFNDVLQNLKSA 283

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L+  +    I++ I Q+ +++ IDE QDT+ +QWE+++ +T++         +   L  V
Sbjct: 284 LENEE----IQHYIGQKYDYLFIDEFQDTNPLQWEIVKRMTKE---------NGIKLIVV 330

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIY F G+EP  +   ++               + L  ++RS A I+   +++ S
Sbjct: 331 GDDDQSIYGFRGSEPAYIKNFEKEYPT---------KTLFLLTNYRSRAAIVQGANRLIS 381

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             +N            +       + G ++ +    ++ +S                   
Sbjct: 382 YNKN--------DRIPKAMIPAQKEAGVMEAYLFSDTKAES------------------- 414

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                  + +   I + I           +  + K+ ++L R    T  +          
Sbjct: 415 -------QWLISQIQSFIQ----------KNGKYKESIILYRSASQTQQLVQSLLKTNIP 457

Query: 400 YKI----SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL---FNFSEDD 452
           + +       G            K +    +   + +        L   L       + +
Sbjct: 458 FVLEADSPYEGIFGIKSFQQFYQKIVHW--QTAQNPQKKSQTYQQLLRQLMVDCYLKKSE 515

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
             +  + +++   + +YI        SK   + ++   L    Q    +      L    
Sbjct: 516 CDQYFSPKYQNTAITDYILSVRPNLKSKSAEIRQFEEALRKTEQHQEVYSLVQSYL---- 571

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH--- 569
              +          + + E +            S+Q L  E +     +K    A     
Sbjct: 572 HLPRIAKEIDQSDQEWIREEVKQHATF-----RSIQALSQETQATAKELKTRLIAYRQGK 626

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + + I ++H +KGL    VFL+        +    +  ++ S                 
Sbjct: 627 LDALCIQSIHKSKGLSYRNVFLIGCNEGSLPYNGATEKKVIDSNEIKAEPV--------- 677

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                        +T EE  RL YV MTRA ++L +C     +  K
Sbjct: 678 -------------TTIEEERRLFYVAMTRARNRLYLCVPQMKNTRK 710


>gi|172037191|ref|YP_001803692.1| putative UvrD/REP helicase [Cyanothece sp. ATCC 51142]
 gi|171698645|gb|ACB51626.1| putative UvrD/REP helicase [Cyanothece sp. ATCC 51142]
          Length = 788

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 92/633 (14%), Positives = 183/633 (28%), Gaps = 63/633 (9%)

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF-NTY 117
            +       LL       + T +    +    +  P L   + +         ++     
Sbjct: 154 ARNPRRYQLLLEGAEFDGEETERLRRQSVLRTEVLPKLAHTIIREAKSSGLTPEKVWELS 213

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              +     L +   L   Y+   +    +D++D+I+   ++L      A IR    Q+I
Sbjct: 214 HYSQDHDDILAVGAGLYEQYQLVMRSLDFIDYDDMILGALNVLDN----AKIRQIWQQQI 269

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKR 236
             +  DE QD+S +Q  +I +L         T+ +   L  VGD  Q+I S F  A+P  
Sbjct: 270 FAVFEDEAQDSSPLQERLISALA--------TNETNCNLIRVGDPNQAINSTFTPADPVY 321

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                           +   + E+  + RS+  I+   + V     +            +
Sbjct: 322 FNWFC-------ETCKEDDKLAEMTQAGRSSKIIIEAANFVLQWVNHQWKYEAQKQQEKQ 374

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ---ESSASILARRIAYTI 353
             S        V  +     +  S+ +PQ ++         +             I   I
Sbjct: 375 LISGTEDDKKEVIPFRLQTIETVSKNDPQPDANPEPIGEGLELYRPDDIYHTVDLIRQRI 434

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             ++  +   +           + +LVR+ +    +    + L   +KI V         
Sbjct: 435 IELLTKNPDHN-----------VAILVRENRQGRFLAEHLKDLPKKHKIRVYEVGESERF 483

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYEYIQ 471
             +   +++ L +FI            L+        S  D+  + T        + Y  
Sbjct: 484 SQIP-YEILTLLQFIDRPHSPDYLKNALEILEKRNLISSQDLNALATYPEN----FLYPS 538

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
              +    +     +Y   L+        +     +    K     ++        +  E
Sbjct: 539 PLISEQKKQVLEARRYCCNLLQAKLELPDYQLIPFLGMTLKYTGAELATVQKLSERISQE 598

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPV 587
            +    +    +   L  L   +           S       N+V I+T+H +KGL+   
Sbjct: 599 LIG---KFSLKNV--LTVLREIINSEQFEPVEEDSEERYTRANQVTIITMHKSKGLDWDY 653

Query: 588 VFLVDTGSQVFSHKHI------------KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           VF+      V                          +          P            
Sbjct: 654 VFIPFLHEDVLPGSPWVPTSAQFLGNFTLAEVSRAQIRAAVHHNYINPNDPLIIPNPEAA 713

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +  ++  + E  RLLYV MTR    L +    
Sbjct: 714 WEEAQQLKKAEEYRLLYVAMTRPKRLLWMSAAK 746


>gi|262374135|ref|ZP_06067412.1| ATP-dependent DNA helicase PcrA [Acinetobacter junii SH205]
 gi|262311146|gb|EEY92233.1| ATP-dependent DNA helicase PcrA [Acinetobacter junii SH205]
          Length = 659

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 95/661 (14%), Positives = 209/661 (31%), Gaps = 133/661 (20%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 65  AASEIVTRVEQHMGAQSKGLRASTFHTFCMYLLRRN-----PRAFGLTQFSIIDRDDQLL 119

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + ++ +      +     +   +   
Sbjct: 120 -----MFRLLRGKDKGNVLPKA--AELCDLYSYARNTKTKLSDALFKQLPQAVEYKSQ-- 170

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI-NHILIDEV 185
                 L   YE+ K++   LD++D++      L+          K      + +L+DE+
Sbjct: 171 ---IAELMKAYEQRKQERNFLDYDDILSIVAVHLQNSPE----LVKWVTGFCSALLVDEM 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 224 QDTNPLQWALLQPLVG-----------KVKLFCVGDDAQSIYGFRGADFENIHHFKERVP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      ++ L +++RST  IL + + +    +        +      +       
Sbjct: 273 --------DAEVLTLEMNYRSTQGILDLSNWLLEQSQIGYDKHLQAYRGNGLKP------ 318

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                         L   S+    A  I   ++           
Sbjct: 319 -----------------------------QLHILSNEFEEANWIVQDLNQRHSQGAA--- 346

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    + ++L+R       +            I         L +   +KD+++L 
Sbjct: 347 -------WAEHMILLRSGFSGRYLEGALIA----ANIPYRFIGGVKLLESAHVKDVLSLL 395

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  ++ +DDL+++  L +      +    K+  +  +   +    Q+    G    Q ++
Sbjct: 396 RVSVNPQDDLAWMRFL-TLWDGVGDVGASKLAQELIQLPDIEARCQRLERHGKVPQQAIL 454

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             +   +      +        L   +    + ++  +  +   D       ++      
Sbjct: 455 ILMQLDVLQQHVEACIGLALDALNE-QLENNYKTKDWSRRVKDFDLVKQLARKH-----H 508

Query: 546 SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           SL E + E    P +I +   + + + V ++T+H+AKG E  V ++       + H    
Sbjct: 509 SLGEFLEEYVLDPISISEIDKTPDQDLVTLITIHSAKGAEQKVCYVPHVSPNQYPH---- 564

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  R+LYV +TRA ++LI+
Sbjct: 565 ------------------------------ARAQGDFDDVEEERRVLYVALTRAENELIL 594

Query: 665 C 665
            
Sbjct: 595 T 595


>gi|237751626|ref|ZP_04582106.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
 gi|229372992|gb|EEO23383.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879]
          Length = 677

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 109/745 (14%), Positives = 208/745 (27%), Gaps = 182/745 (24%)

Query: 10  NESYELIYKDLWPLPYFQVSDINKYVSLSMET-GNPTILKKAQTLQQASQTQCIEERFSL 68
                LI + + P     ++  NK     +E  G       A  ++  +           
Sbjct: 34  GRIATLIERSIKPHEILLLTFTNKASHEMIERVGKIFDKTLANKIEAGTFHSVAYRYLKE 93

Query: 69  LSSFFLTQKFTPQ---KNIITQE--INKKSPDLKEKLKKSQDE-----FIKIRDRFNTYK 118
                L Q    +   K+I  +      K+P   + L  S          +    + + K
Sbjct: 94  HKKITLKQPRELKILFKSIYDRRQFKFDKAPYSYQYLYDSYSLYKNSTIDQSYGEWLSNK 153

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +     + + + +   ++  K +    D+ DL+     LL + ++   +R K + EI 
Sbjct: 154 NAEQMD-FIDIYEDIFDEFQNLKAEYAYADYNDLL-----LLYREEL---VRLKENGEIP 204

Query: 179 HI--LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           +I  L DE QDT+ +Q  +IR+++            P++LF VGD  QSIY+F+GA+   
Sbjct: 205 YIEVLCDEYQDTNPLQDSIIRAIS------------PQSLFCVGDYDQSIYAFNGADISI 252

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +                  ++  L  ++RS   IL + +KV S        S +      
Sbjct: 253 ITNFVENYPN--------ANVFSLSKNYRSGKHILDLANKVISHNPRIYPKSLEVIK--- 301

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                      V     V+   D                             IA  I  +
Sbjct: 302 ---------SGVAHLPSVLVYEDMFSQYSG----------------------IAKRIKEI 330

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
              +          +   D  ++ R       +    R L     I           D  
Sbjct: 331 HERE---------GLPYNDFAIIYRNNVSADGLQAALRAL----HIGSKRKGSGSFFDSK 377

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS--------------------------- 449
            I+ L+ L   + ++ D +S++ +L S                                 
Sbjct: 378 EIEFLLCLCSVLTNERDMMSYIHIL-SHAKGIGNSIAKDIFEALIILGHGNCKKGLLTPD 436

Query: 450 -----------------EDDIFKICTQRHETETVYEYIQKFANCGISKFQH-----VIKY 487
                             DD F+          +++           K +         +
Sbjct: 437 RTKECYPKKAINSGLGLFDDFFRHEECSRFNNLLHKDFHSHPLFSHPKIEREAASFFNDF 496

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQ----FISRFGNEVIDVLDEFLNFTLRNEQNS 543
                      +P      ++     +         R   +     D     + +   + 
Sbjct: 497 FTAYKENNAIFTPRSLLQNLIETPLYKNYTESLLKDRSKTKDGKQDDTLYEDSKKRLLSR 556

Query: 544 YSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            + L  +               +  +     + V +++VH +KGLE   VF+VD     F
Sbjct: 557 LNILCNISENYSNIQSFLNAMVLGGSDINEEDGVNLLSVHASKGLEFSCVFVVDLMDGRF 616

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            +                                       +  + EE  RL YV +TRA
Sbjct: 617 PN----------------------------------HKLAARGGSIEEERRLFYVALTRA 642

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYD 683
            + L +      S          ++
Sbjct: 643 KEYLYLSYAKQDSKTSYKPSAFLFE 667


>gi|257896731|ref|ZP_05676384.1| UvrD/REP helicase [Enterococcus faecium Com12]
 gi|257833296|gb|EEV59717.1| UvrD/REP helicase [Enterococcus faecium Com12]
          Length = 728

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 89/553 (16%), Positives = 184/553 (33%), Gaps = 110/553 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L    +E K++  +L+F D++ N    L+  +    I++ I Q+ +++ IDE QDT+ +Q
Sbjct: 257 LLTELQEQKRRQQLLEFNDVLQNLKSALENEE----IQHYIGQKYDYLFIDEFQDTNPLQ 312

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           WE+++ +T++         +   L  VGD+ QSIY F G+EP  +   ++          
Sbjct: 313 WEIVKRMTKE---------NGIKLIVVGDDDQSIYGFRGSEPAYIKNFEKEYPT------ 357

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                + L  ++RS A I+   +++ S  +N            +       + G ++ + 
Sbjct: 358 ---KTLFLLTNYRSRAAIVQGANRLISYNKN--------DRIPKAMIPAQKEAGVMEAYL 406

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
              ++ +S                          + +   I + I           +  +
Sbjct: 407 FSDTKAES--------------------------QWLISQIQSFIQ----------KNGK 430

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKI----SVVGNDRFILTDHLAIKDLMALGRFI 428
            K+ ++L R    T  +          + +       G            K +    +  
Sbjct: 431 YKESIILYRSASQTQQLVQSLLKTNIPFVLEADSPYEGIFGIKSFQQFYQKIVHW--QTA 488

Query: 429 LSQEDDLSFVCMLKSPL---FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
            + +        L   L       + +  +  + +++   + +YI        SK   + 
Sbjct: 489 QNPQKKNQTYQQLLRQLMVDCYLKKSECDQYFSPKYQNTAITDYILSVRPNLKSKSAEIR 548

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           ++   L    Q    +      L       +          + + E +            
Sbjct: 549 QFEEALRKTDQHQEVYSLVQSYL----HLPRIAKEIDQSDQEWIREEVKQHATF-----R 599

Query: 546 SLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           S+Q L  E +     +K    A      + + I ++H +KGL    VFL+        + 
Sbjct: 600 SIQALSQETQATAKELKTRLIAYRQGKLDALCIQSIHKSKGLSYRNVFLIGCNEGSLPYN 659

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
              +  ++ S                              +T EE  RL YV MTRA ++
Sbjct: 660 GATEKKVIDSNEIKAEPV----------------------TTIEEERRLFYVAMTRARNR 697

Query: 662 LIICKHSNTSNEK 674
           L +C     +  K
Sbjct: 698 LYLCVPQMKNTRK 710


>gi|41409399|ref|NP_962235.1| hypothetical protein MAP3301c [Mycobacterium avium subsp.
            paratuberculosis K-10]
 gi|41398230|gb|AAS05851.1| hypothetical protein MAP_3301c [Mycobacterium avium subsp.
            paratuberculosis K-10]
          Length = 1044

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 118/1018 (11%), Positives = 261/1018 (25%), Gaps = 179/1018 (17%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
             + +     P  +   +      +         +  +   +   +   +     L +  L
Sbjct: 76   ALLRSAGAGPAVREPLVRTVHGYAYAVLRRAAERAGEAPPRLVTSAEQDAIIRELLAGDL 135

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST-----LASLTL 129
                 P+         + +        + ++   +  +R    +  +             
Sbjct: 136  --ADGPRAATAWPAALRPALSTAGFATELRNLLARCAERGVDPQALERLGRRCRRPEWVA 193

Query: 130  AKYLNAHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            A      YE+                   L   +L+    +      V A +       I
Sbjct: 194  AGQFARQYEQVMLLRAAVGTAAPEATTPALGAAELVGAALEAFA---VDAELLAAERGRI 250

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              +L+D+ Q        ++R L     +              GD  Q+++ F G +P  +
Sbjct: 251  RVLLVDDAQQLDPQAARLVRVLAAGADLA----------LIAGDPNQAVFGFRGGDPGSL 300

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            L                   + L  S R    +   V  V      A  L   S      
Sbjct: 301  LD-------------GAAPAVTLTRSHRCAPAVARAVSGV------AGRLPGSSAGRRIE 341

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             +        V+L     ++  +  +  + +                             
Sbjct: 342  GAGPGEGSVAVRLAASAHAEAAAIADALRRAHLVD------------------------- 376

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFILTDHL 416
                         +    + V+VR     P              + V        L +  
Sbjct: 377  ------------GVPWSQMAVIVRS---VPRAGARLPRALAAAGVPVTAPAASGPLAEQP 421

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE----------TETV 466
            A++ L+ +        D    + +L  P+       + ++                 E +
Sbjct: 422  AVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLRRNLQRANAGRPPGDFAELL 481

Query: 467  YEYIQKFANCGISKFQHVIKYIHEL----IHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
             E +   A    + F+ + +    L            P             +++++S   
Sbjct: 482  VEALTGTAPPPGAPFRALRRVRAVLDAAGRCHRDGQDPRYILWAAWHRSGLQRRWLSVSE 541

Query: 520  ---RFGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
                   +    LD      + T     + S +SL+ L+  +            A   +V
Sbjct: 542  RGGPAAAQAGRDLDSVTALFDITDDYVSRTSGASLRGLVEHVAALQL-PGAEPVATAEQV 600

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
             +++ H A G E   V +      ++ +   +   +      D    +            
Sbjct: 601  SVLSAHAALGREWDFVVIAGLQDGLWPNTVPRGGVLGTQRLLDVLDGV------------ 648

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH----SNTSNEKKSNQRTWYDMVYDS 688
                  ++     E  RLL   M RA  +L++         +  E        Y++   +
Sbjct: 649  -SADASVRAPLLAEERRLLVAAMGRARQRLLVTAVDSDTDGSDREAALPSPFCYEIAQWA 707

Query: 689  FHNDERVKKIKLTNS-----------------INKDEWIAYEWSTHHPENTPLEREETI- 730
              + E      ++                            +      +   L +     
Sbjct: 708  GEDAEPAALQPVSAPRVLSAAALVGRLRGVVCAPDGAVDELDRRCAATQLARLAKAGVPG 767

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF-------NRG 783
                    +     +       +   L PST+ T     L  L   +            G
Sbjct: 768  ADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQTLTDCPLRWLAERHGGTDPRDLRSAIG 827

Query: 784  LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
             ++H L+      P          +  ++          N L     +LE      A + 
Sbjct: 828  SVVHALIAQPHRSPAELVAELDRVW--RHLPFAAQWHSDNELARHRAMLEAFAQWRANTR 885

Query: 844  DSYSEVSVSGKIN-----CPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIP 897
             + +EV V  +I+        +++ + GR+D++       + I + KT      + +   
Sbjct: 886  GALTEVGVEVEIDGTLSTGDGREVRLRGRVDRLERDAAGRLVIVDVKTGKTPVSKDDAQQ 945

Query: 898  YTHIAQLSIYEKILKDSYPN------KSLVCLLIYVSEPK---VFIIPQNKLNKAFAE 946
                AQL++Y+  +            +     L+YV +     V    Q+ L  A A+
Sbjct: 946  ---HAQLALYQLAVAHGLLGAAGGDAEPGGARLVYVGKAAASGVVEREQDPLTAAAAD 1000


>gi|13508080|ref|NP_110029.1| DNA helicase II [Mycoplasma pneumoniae M129]
 gi|2495149|sp|P75437|UVRD_MYCPN RecName: Full=Probable DNA helicase II homolog
 gi|1674187|gb|AAB96143.1| DNA helicase II [Mycoplasma pneumoniae M129]
 gi|301633619|gb|ADK87173.1| UvrD/REP helicase [Mycoplasma pneumoniae FH]
          Length = 715

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 112/614 (18%), Positives = 192/614 (31%), Gaps = 112/614 (18%)

Query: 63  EERFSLLSSFFLTQKFTPQKNIIT--QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
           ++  S     FL +     + ++           D      K  +  +++ +        
Sbjct: 109 DDDLSNFLKDFLKESELKSQKVLQIIDGFKNAYFDFDTNSLKDDERLVELCE--FHLDPQ 166

Query: 121 KSTLASL-TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           +         A      YE+ K++N  +DF DL+I T  LL K      +  K  ++  +
Sbjct: 167 ERNFQLFKETAIAAFVEYEKGKQQNNKIDFADLLIKTCTLLSKDH---KLLRKWSKKFQY 223

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           IL DE QDT+ IQ+E+I+ L              + LF VGD  Q IY + GA    +  
Sbjct: 224 ILGDEFQDTNQIQYELIKMLASH----------HQNLFLVGDNNQMIYRWRGAVSDIIDS 273

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            K   + R  N         +  ++R   +ILTV + +      A+    DST      +
Sbjct: 274 LKSDFKVRPEN------EFYITQNYRCDQNILTVANSILGTI-YAKENQPDSTKGFLFSA 326

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            +  +         +     +     Q SW                   I   I N+   
Sbjct: 327 IKSNR---------LPVYFQASSVEGQHSW-------------------IINKIKNLH-- 356

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                  K   IQ KD+ +L R  ++   +T        D  I +  N  F        K
Sbjct: 357 -------KNHGIQYKDMAILFRTNRNMDSMTEALEA---DGSIPLKQNKGFFKQLETFKK 406

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            L+AL     + +  L+   +   P        + +        + + + I         
Sbjct: 407 VLVALITR-SNYDIKLALKSLRVWPNVLNKSLTVNEQVNLDKILQNLEQAIF-LDEHTRG 464

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
           +     K    LI   +             A    Q   +         L +        
Sbjct: 465 ELTEAAKVFTRLIKFVEEQQFEALLAFTFEALNTDQFVCNFI----FRTLQKLQTENKNF 520

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 ++ + I+EL      +K    +  N + ++TVH+AKGLE   VF+       F 
Sbjct: 521 ------TITDFINELRFQQDELK---QSKDNVINLITVHSAKGLEFEAVFIYGINQDNFP 571

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            K   ++  +                                  + +  RL YV +TRA 
Sbjct: 572 LKSKNQIIDL--------------------------------QRELDELRLFYVALTRAK 599

Query: 660 DQLIICKHSNTSNE 673
             L +      S E
Sbjct: 600 KYLFLLSVYQMSGE 613


>gi|69244425|ref|ZP_00602841.1| UvrD/REP helicase [Enterococcus faecium DO]
 gi|257881693|ref|ZP_05661346.1| ATP-dependent DNA helicase [Enterococcus faecium 1,231,502]
 gi|257886324|ref|ZP_05665977.1| UvrD/REP helicase [Enterococcus faecium 1,231,501]
 gi|257890922|ref|ZP_05670575.1| UvrD/REP helicase [Enterococcus faecium 1,231,410]
 gi|258615295|ref|ZP_05713065.1| ATP-dependent DNA helicase [Enterococcus faecium DO]
 gi|260558592|ref|ZP_05830788.1| UvrD/REP helicase [Enterococcus faecium C68]
 gi|293559536|ref|ZP_06676071.1| ATP-dependent DNA helicase [Enterococcus faecium E1162]
 gi|294619537|ref|ZP_06698974.1| ATP-dependent DNA helicase [Enterococcus faecium E1679]
 gi|294623332|ref|ZP_06702193.1| ATP-dependent DNA helicase [Enterococcus faecium U0317]
 gi|314939637|ref|ZP_07846862.1| UvrD/REP helicase [Enterococcus faecium TX0133a04]
 gi|314943996|ref|ZP_07850697.1| UvrD/REP helicase [Enterococcus faecium TX0133C]
 gi|314948596|ref|ZP_07851972.1| UvrD/REP helicase [Enterococcus faecium TX0082]
 gi|314953882|ref|ZP_07856745.1| UvrD/REP helicase [Enterococcus faecium TX0133A]
 gi|314993525|ref|ZP_07858881.1| UvrD/REP helicase [Enterococcus faecium TX0133B]
 gi|314995546|ref|ZP_07860643.1| UvrD/REP helicase [Enterococcus faecium TX0133a01]
 gi|68196366|gb|EAN10794.1| UvrD/REP helicase [Enterococcus faecium DO]
 gi|257817351|gb|EEV44679.1| ATP-dependent DNA helicase [Enterococcus faecium 1,231,502]
 gi|257822180|gb|EEV49310.1| UvrD/REP helicase [Enterococcus faecium 1,231,501]
 gi|257827282|gb|EEV53908.1| UvrD/REP helicase [Enterococcus faecium 1,231,410]
 gi|260075766|gb|EEW64072.1| UvrD/REP helicase [Enterococcus faecium C68]
 gi|291594228|gb|EFF25665.1| ATP-dependent DNA helicase [Enterococcus faecium E1679]
 gi|291597267|gb|EFF28457.1| ATP-dependent DNA helicase [Enterococcus faecium U0317]
 gi|291606488|gb|EFF35887.1| ATP-dependent DNA helicase [Enterococcus faecium E1162]
 gi|313590240|gb|EFR69085.1| UvrD/REP helicase [Enterococcus faecium TX0133a01]
 gi|313591962|gb|EFR70807.1| UvrD/REP helicase [Enterococcus faecium TX0133B]
 gi|313594217|gb|EFR73062.1| UvrD/REP helicase [Enterococcus faecium TX0133A]
 gi|313597420|gb|EFR76265.1| UvrD/REP helicase [Enterococcus faecium TX0133C]
 gi|313641046|gb|EFS05626.1| UvrD/REP helicase [Enterococcus faecium TX0133a04]
 gi|313644973|gb|EFS09553.1| UvrD/REP helicase [Enterococcus faecium TX0082]
          Length = 728

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/587 (15%), Positives = 199/587 (33%), Gaps = 115/587 (19%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           E++ +   E     D+     + +     LT         +E K+   +L+F D++ N  
Sbjct: 229 EEMVQLVKEKYDSIDKNARQPISERLYGLLT-------ELQEQKRSQQLLEFNDVLQNLK 281

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
             L+  +    I++ I Q+ +++ IDE QDT+ +QWE+++ +T++         +   L 
Sbjct: 282 SALENEE----IQHYIGQKYDYLFIDEFQDTNPLQWEIVKRMTKE---------NRIKLI 328

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIY F G+EP  +   ++               + L  ++RS A I+   +++
Sbjct: 329 VVGDDDQSIYGFRGSEPAYIKNFEKEYPT---------KTLFLLTNYRSRAAIVQGANRL 379

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            S  +N            +       + G ++ +    ++ +S                 
Sbjct: 380 ISYNKN--------DRIPKAMIPAQKEAGVMEAYLFSDTKAES----------------- 414

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                    + +   I   I           +  + K+ ++L R    T  +        
Sbjct: 415 ---------QWLIKQIQTFIQ----------KNGKYKESIILYRSASQTQQLVQSLLKTN 455

Query: 398 NDYKI----SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--FNFSED 451
             + +       G        H   + ++     +  Q+ + ++  +L+  +      + 
Sbjct: 456 IPFVLEADSPYEGIFGIKSFQHFY-QKIVHWQTALNLQKKNQAYQQLLRQLMADCYLKKS 514

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
           +  +  + +++   V +YI   +    SK   + ++   L    Q    +      L   
Sbjct: 515 ECDQYFSPKYQNIAVADYILSISPNLKSKSAEIREFEEALRKTDQHQEIYSLVQSYL--- 571

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-- 569
               +          + + E +             LQ L  E +     +K    A    
Sbjct: 572 -HLPRIAKEIDQSDQEWIREEVKQHATF-----RRLQALSQETQATAKELKTRLIAYRQG 625

Query: 570 --NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + + I ++H +KGL    VFL+        +    +  ++                  
Sbjct: 626 KLDALCIQSIHKSKGLSYRNVFLIGCNEGSLPYNGATEKKVIDFNEIKAEPV-------- 677

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                         +T EE  RL YV MTRA ++L +C     ++ K
Sbjct: 678 --------------TTIEEERRLFYVAMTRARNRLYLCVPQMKNSRK 710


>gi|299771676|ref|YP_003733702.1| putative ATP-dependent DNA helicase [Acinetobacter sp. DR1]
 gi|298701764|gb|ADI92329.1| putative ATP-dependent DNA helicase [Acinetobacter sp. DR1]
          Length = 659

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 107/713 (15%), Positives = 221/713 (30%), Gaps = 131/713 (18%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 65  AASEIVARVEQHVGAQAKGLRASTFHTFCMYLLRRN-----PQAFGLNQFSIIDRDDQLL 119

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +   +             
Sbjct: 120 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQTKLSEALIKQLPDAYEHKNQ-- 170

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-WIRYKIDQEINHILIDEV 185
                 L   YE+ K++   LD++D++      L+  +    W+          +L+DE+
Sbjct: 171 ---IADLMKTYEQRKRERNFLDYDDILSIVAVHLQNSEALTNWVAGFCQA----LLVDEM 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 224 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I  L L++RST +IL + + + +                +   +  GQ 
Sbjct: 273 --------DAVIHTLDLNYRSTQEILDLSNWLLAHSP---------IDYQKQLQAHRGQG 315

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              QL        +                          A  IA  +            
Sbjct: 316 QKPQLHLFGNEYEE--------------------------ANWIAQDLITRHQQG----- 344

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D +VLVR       +       +    +         L +   +KD+++L 
Sbjct: 345 -----ASWYDHMVLVRSGYSARYLEGAFIAAE----VPYRFIGGVKLLESAHVKDVLSLL 395

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R + +  DDL+++  L +      +    K+  +      V E   +    G    Q ++
Sbjct: 396 RIVSNPHDDLAWMRFL-TLWDGIGDVGASKLAQELMGIVDVEERCNRLERHGKVPLQAIL 454

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
                L  +       +    +     G Q   +    +    L +F +   +  +   S
Sbjct: 455 ----ILKQLDVLQQHVEASIGLALDALGEQLEQNYKTKDWSRRLKDF-DLVKQLARKHAS 509

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             + L   + +     +   +A+ + V ++T+H+AKG E  V ++               
Sbjct: 510 LGEFLEEYVLEPISVSEIEKAADQDLVTLITIHSAKGAEQKVCYVP-------------- 555

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                   N              EE  R+LYV +TRA ++LI+ 
Sbjct: 556 --------------------HVSPNQYPYARAQGDFDDVEEERRVLYVALTRAENELILT 595

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
           K +  +  + +       +     ++          +      +   +WS   
Sbjct: 596 KQNLNTWSEDNYDEQGRKIESYFLNDLPAHLVQAKIHRQVPQPFAKKQWSRSP 648


>gi|316933463|ref|YP_004108445.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
 gi|315601177|gb|ADU43712.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1]
          Length = 1133

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/968 (13%), Positives = 260/968 (26%), Gaps = 153/968 (15%)

Query: 8    SLNESYELIYKDLWPLPYFQV------SDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  E  E I +                  ++       E G     +     +     + 
Sbjct: 252  AAGEMAERIARKRPEAAAAMWIGTFHAFGLDIIRRFHAELGLSKDPRMMDRTEAVELLEE 311

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMF 120
               R  L     L        +++      K      E      D  +         +  
Sbjct: 312  EFPRLRLAHYRNLYDPTQIIADMLAAISRAKDEVADAETYAGLADAMLAKAGDPEAREAA 371

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +  +        + A YE+ K+    +DF DL+     LL+K    A I   +    +H+
Sbjct: 372  ERAVE----VARVYAAYEQLKRNAHCIDFGDLVALPVQLLEKD---AAICAALQARYDHV 424

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            L+DE QD +     ++R+L              R L+ VGD KQSIY F GA    + R 
Sbjct: 425  LVDEYQDVNRSSVRLLRAL----------RPDGRNLWMVGDAKQSIYRFRGASSFNMTRF 474

Query: 241  -KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             K                  L  ++RS  +I+       +                   +
Sbjct: 475  GKEDFP--------GGKRGRLKRNYRSVPEIV-------ASFSGFAITMRAGDADSGLEA 519

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             R       +L     ++                               +A  I  +   
Sbjct: 520  DRDANGHRPELRTVQRAEQQQVA--------------------------LADAIEELRRE 553

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                          ++  VL    +    I      L     + V+      L +   +K
Sbjct: 554  G----------YAYREQAVLCTGNEKLSTIGQDLERL----GVPVLFLG--SLFERGEVK 597

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANC 476
            DL+AL   ++ +      V +   P F  S  D   +F            +    +    
Sbjct: 598  DLLALLSILVDRRAMG-LVRIACWPDFVTSFADVAAVFDHLRAAGHAPASWVRDGETIPG 656

Query: 477  GISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQF---ISRFGNEVIDVLDE 531
                 +  +  +   +              TL+L   +   +               + +
Sbjct: 657  LSDAGRRTLAGLAAALDGFDQTASPWTALATLLLDRTRIAARLGTSADLADRTRGIAIWQ 716

Query: 532  FLNFTLRNEQNSYSSLQELISEL-------EQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
            FLNF           +  L+  +       +        A + + + VR+MT+H AKGLE
Sbjct: 717  FLNFVRVQPAGRGLPITRLLDRVRRLVRLGDDRDLRQLPAAAQHLDAVRLMTIHGAKGLE 776

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V +    S              P                         ++  +    
Sbjct: 777  FRGVHIPGLNSDTIPRTPPVPPCPAPDGMIAG--------------AEGSAVETFRAGQA 822

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            EE   L YV  +RA D+LI+   +  SN        + D +  +      V    L  + 
Sbjct: 823  EEQECLFYVAQSRARDRLILYAPTEKSNGHNRPLSPFLDRLGVTLTRHSIVPARPLPVAA 882

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                               +   E+  +      + +             +    S +  
Sbjct: 883  EARGVDLVVDGRLSFGAPQIALYESCPRRFFYTHVLQVGGRRTATAFMHLHEAVRSVVAE 942

Query: 765  KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
               +                        +       R     +        + A+     
Sbjct: 943  VIASGPP---------------------VSEQALQDRTAAALAGEGLADHGYSAEFRDLA 981

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF-EY 883
            L+ +   L N         D+ +E  V+  +N   ++II+  R D++ +    +      
Sbjct: 982  LVMLRFFLAN-------RADAVAETPVALSLNFGGEEIIV--RPDEVLVRPDGVRAVRRI 1032

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            +T H    E + +    +         +K ++P    V  L+++S+ +   +     ++ 
Sbjct: 1033 RTGHMRSAESKDVGAAAL------MLAVKQAFPGA--VAELVHLSDGETHAL--ALSDRE 1082

Query: 944  FAEISTKI 951
                  K+
Sbjct: 1083 LKGRKDKL 1090


>gi|237750155|ref|ZP_04580635.1| ATP-dependent nuclease subunit A [Helicobacter bilis ATCC 43879]
 gi|229374342|gb|EEO24733.1| ATP-dependent nuclease subunit A [Helicobacter bilis ATCC 43879]
          Length = 838

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 130/867 (14%), Positives = 284/867 (32%), Gaps = 130/867 (14%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            +K+   ++  K +  +++++    ++  ++   +                +       E
Sbjct: 78  EKKHNYIKQDLKLNESMQQEIAYKCEQIQQLGILYTMCVESALLSHLYMFLEIYIQAIRE 137

Query: 140 AKKKNCVLDFEDLIINTNDLLKK------RDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            + K+ +L F+ +      +            S +  +++D  I+HIL DE QDTS++Q+
Sbjct: 138 IESKHNILSFQSIAHKVFAIATDTLMIDGDFQSDYFFFRLDSCISHILFDEYQDTSIMQY 197

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +   L  +   G  T    ++LF VGD KQS+Y+F GA      + KR+          
Sbjct: 198 RIFEPLFNEILAGSGTKD-SKSLFFVGDSKQSLYAFRGANISVFEKTKRL---------D 247

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                 L  ++RS   I+  V+  F+       L ++      +        G V +   
Sbjct: 248 SMQQESLSHNYRSKKAIIDFVNDKFAN------LYKEEYIKQLYSEHSQDISGVVNV--- 298

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
               ++   + +      + D+L                ++ +I +           +  
Sbjct: 299 --KLYEDTGDKEINKNAVFTDTLT--------------QLNRLIES----------NVPK 332

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           K+I++L RKR          +   ND  I +  +    L +  +I+ +  + +    +++
Sbjct: 333 KEIVILARKRDTLHEFNLFLKE--NDSTIKLNLDKSGKLINQPSIQAIFYVFKTQEYRDE 390

Query: 434 D---LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                S + ML+      +    F     + +  T  E +Q+      + ++   K +++
Sbjct: 391 IKLIESRLGMLQDSTQQVTIQQDFSPQDSKPKDST--ESLQEKLRKAKNNYKFAQKKLNK 448

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSL 547
           L+  + F + +              + I      +    D   E L      E     ++
Sbjct: 449 LLGKSYFDNQYIAIPQQTSTYYSLAKSIKSVMESLRFYNDDCMELLEIAS--ENIDIKNI 506

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             L   +E     I +        +  M+VH +KGL    V  +D  +Q  ++       
Sbjct: 507 DSLFEFIENRESVIMQE-----EAIHAMSVHGSKGLGFEYVIYLDYEAQKQNNNEKILYS 561

Query: 608 IMPSLNDDPGI-PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                 D   I       +  R+  + DL    ++   ++    LYV  TRA   L I  
Sbjct: 562 YNDIFLDSIRIDTTTKAMNIYRDKTLQDLADKKERENLQQEYNNLYVACTRAKIGLYIFA 621

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
           +  +S                          I    ++  +E    E  T          
Sbjct: 622 NKESS--------------------------IATHLALKDNENYGEEIQTKRDSKQTQNN 655

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
              I +L  +    ++                   +  K  +  +  +S       GL +
Sbjct: 656 LTIISKLQAKNTTQEEF------------------LQEKQDSFYQHNISMQHKQILGLSL 697

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN--PMMTTAMSCD 844
           H  L+++      K    + ++               +L     + ++    +       
Sbjct: 698 HYSLELMLGF-GIKNPYAMLNFL--YGFYLDESMIVEILQKANNIFKSSLEKLLYMDKNT 754

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
              E+S   + +          R+D +  + +  F+ E+K+  ++    E +   H AQL
Sbjct: 755 IKCELSFLQENSIK--------RLDALIQNGEEFFVIEFKSSQNIS---EALLQEHTAQL 803

Query: 905 SIYEKILKDSYPNK-SLVCLLIYVSEP 930
             Y + +      K  +   L+Y+ + 
Sbjct: 804 QSYMESIATISQKKSQIKGYLVYLQDN 830


>gi|154500527|ref|ZP_02038565.1| hypothetical protein BACCAP_04200 [Bacteroides capillosus ATCC 29799]
 gi|150270758|gb|EDM98054.1| hypothetical protein BACCAP_04200 [Bacteroides capillosus ATCC 29799]
          Length = 1053

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/549 (15%), Positives = 151/549 (27%), Gaps = 114/549 (20%)

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                 + +   Y+    +   +DF+DL      LL +   +     K  +   H+L+DE 
Sbjct: 588  LSEAEQKVCGAYQAMLAERGAMDFDDL------LLSELARAEGAADKDLKPFTHLLVDEF 641

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QD   IQ+ ++R+           + +  +LF +GD  QSIY F G +            
Sbjct: 642  QDCDPIQYRLLRAW----------NRAGESLFVIGDPDQSIYGFRGGDGASWRHLAEDWP 691

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQ 304
            +           + L  ++RS A+IL     V        +GL               G 
Sbjct: 692  E--------VRTVRLTENYRSRAEILRCALPVIEKNGGGPRGLHSV-----------PGD 732

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             G V+L                                      +A  I   +G   + S
Sbjct: 733  GGRVRLVTADTPLSQG--------------------------IFVAREIGRQVGGMDMVS 766

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
               +      D  V  R R+   L+    R       +      +     H  ++  +  
Sbjct: 767  AHGEAARTFSDFAVCCRTRRQLELLEECLR----KEDVPCAVVGKGGFLTHRTVRGALGF 822

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQKFANCGISKFQH 483
             R +   E +   + ++        +        ++            + A         
Sbjct: 823  FRALAWPEREDPSLALMLGFDCPPDKAHAAAEVWRQENGSPVERARAAEAACPDADGLSR 882

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
                + +L  +     P                +         + L+  +N  +   +  
Sbjct: 883  FRALMEQLAPLVGRDKPVRLLE----------AYGRAVNQAGTEPLERLMNMAV-FHRRM 931

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               L  L     +               V + T+H AKGLE PVVFL      +      
Sbjct: 932  EDFLLSLTVG-READLLRSAGQGYRAGYVTLTTLHAAKGLEFPVVFLCGVEKGLLP---- 986

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                + S   E  RL YVGMTRA ++LI
Sbjct: 987  -------------------------------YCSRRRASDPAEERRLFYVGMTRAMEELI 1015

Query: 664  ICKHSNTSN 672
            +      S 
Sbjct: 1016 LVAGPEPSP 1024


>gi|126659573|ref|ZP_01730704.1| hypothetical protein CY0110_06199 [Cyanothece sp. CCY0110]
 gi|126619116|gb|EAZ89854.1| hypothetical protein CY0110_06199 [Cyanothece sp. CCY0110]
          Length = 788

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/631 (14%), Positives = 189/631 (29%), Gaps = 65/631 (10%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK-EKLKKSQDEFIKIRDRFNTYKMF 120
            +    LL       + T +    +    +  P L    +++++   +     +      
Sbjct: 157 PQRYQLLLEGIEFDGEETERLRRQSVLRTEVLPKLAHTIIREAKSSGLNAEKVWELSHYA 216

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           + +   L +   L   Y+   +    +D++D+I+   ++L+     A IR    Q+I  +
Sbjct: 217 QESYDILAVGAGLYEQYQTVMRSLDFIDYDDMILGALNVLEN----AKIRQVWQQQIFAV 272

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLR 239
             DE QD+S +Q ++I +L         T+ +   L  VGD  Q+I S F  A+P     
Sbjct: 273 FEDEAQDSSPLQEQLISALA--------TNETDCNLIRVGDPNQAINSTFTPADPVYFNW 324

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                        +   + E+  + RS+  I+   + V     +            +  S
Sbjct: 325 FC-------ETCKENNKLAEMTQAGRSSKIIIEAANFVLQWVNHQWKYEAQKQQEKQLTS 377

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ---ESSASILARRIAYTISNM 356
                   V  +     +  S+ +PQ ++         +             I   I  +
Sbjct: 378 GSEEDKKEVIPFRLQTIETVSKNDPQPDANPEPIGEGLELYRPDDIYHTVDLIRQRIIEL 437

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +  +   +             +LVR+ +    +    + L   +KI V           +
Sbjct: 438 LTKNPHHNA-----------AILVRENRQGRFLAENLKDLPKKHKIRVYEVGESERFSQI 486

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              +++ L +FI            L+           D+  + T        + Y     
Sbjct: 487 P-YEILTLLQFIDRPHSPDYLKNALEILEKRNLIPSQDLNALATYPEN----FLYPSPLI 541

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                      +Y   L+        +     +    K     ++        +  E + 
Sbjct: 542 TEQKKPVLEARRYCCNLLQAKLELPDYQLIPFLGMTLKYTGSELATVQKLSERISQELIG 601

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-----NEVRIMTVHTAKGLESPVVF 589
                 + S  S+  ++ E+            +       N+V I+T+H +KGL+   VF
Sbjct: 602 ------KFSLKSVLNVLREIINSEQFEPVEEDSEERYTRANQVTIITMHKSKGLDWDYVF 655

Query: 590 LVDTGSQVFSHKHI------------KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           L      V                          +          P          D  +
Sbjct: 656 LPFLHEDVLPGSPWVPTSAQFLGNFTLAEVSRAQIRAAVHHNYINPNDSLIIPNPEDAWE 715

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             ++  + E  RLLYV MTR    L +    
Sbjct: 716 EAQQLKKAEEYRLLYVAMTRPKRLLWMSAAK 746


>gi|219684318|ref|ZP_03539262.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii PBr]
 gi|219672307|gb|EED29360.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii PBr]
          Length = 1169

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 138/849 (16%), Positives = 268/849 (31%), Gaps = 107/849 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      +LIDE Q
Sbjct: 315  YKILKYIEKELEKIIKSTNTIDQNYIISNLKNYLKSED--QKLLNAIKNRYKIVLIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SL+Q E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLMQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADIAF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               N  +  + I L  + RS+  ++  ++++F        +S++        S    +  
Sbjct: 416  EIKNKIKTDARIVLKTNHRSSKKLIEPLNRIF-NNIYNNAISDEIEKIEFTNSLSNQKND 474

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
               +            N Q+    +   +  +        ++ A TI  ++    I  N 
Sbjct: 475  NNNIL----------INGQEIEGINIITTTTENEEDIY--QKTALTIKYLLTYGAIVENN 522

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R I+ +DI VL R + +  LI    +  +           +  +       ++  + +
Sbjct: 523  NIRNIEMQDIKVLCRGKNEINLIDKALKKEQIRTN-----KTQEKVLKTKEFNEIFYILK 577

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQHV 484
             +  ++   +   +L S + N   D    +  Q      E   E I            + 
Sbjct: 578  CLDRKQSFKNLNYILNSKILNVPWDLQKILIKQEKIQLIEEFIENITVLLEKNEITLINA 637

Query: 485  IKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR-- 538
            I  I    +  I IA                  +   I     E +   +  L    R  
Sbjct: 638  INKITLEKNLWIKIANSTKDPKIIEWAKNKINYKGLLIKEGKLENLKTYETALEIISRIY 697

Query: 539  NEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            +++ +  SL   +  L     + +        + ++  + ++T+H +KGL   +VFLV+T
Sbjct: 698  HKEQNIQSLISNLESLIINEESEEIEEKANNINNDNESIELITIHKSKGLSMNIVFLVNT 757

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                 S+   KK H      +      +          + +  K+ +     E   + YV
Sbjct: 758  SPVENSNIFSKKNHFYKFYKNGNIEYDFFK--------LEENKKYARLKILSEEKNIFYV 809

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            G TRA   L I K ++ +++     +++   + D  H+    + I       K       
Sbjct: 810  GATRAKFALFITKTNSITSKLLEIAKSFT--IDDINHDFNIYQFISQKRLNKKKNNANIT 867

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                 P+       +                +    + +          D   +T LE  
Sbjct: 868  TELIPPKPIIKNMFKKEYTSSFSSLTAHAHHTTFYENYDFKNTNYEKETDLDYETTLEEA 927

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYK-NL 824
            L   +  + G I+H  ++ I                   I     K        E + +L
Sbjct: 928  L--PKGKDSGNILHAAMEEIVFSTAKDTFDNFKQINIEIIKKQIQKINSNLNTIEIQNSL 985

Query: 825  LLSITRLLE------NPMMTTAMSCDSYSEVSVSG------------------KINCPKK 860
               I  +L       N  +      +   E+                       ++    
Sbjct: 986  TKMIYNILTYNIRAINTRLCDI--EELQKEMEFLIKINPKVQKQKYLFENHFEDLHIKLS 1043

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKIL 911
            D  + G +D I  +   I+I +YKT++    + ++             +  Q  IY   +
Sbjct: 1044 DGYLKGIVDLIFKANNKIYILDYKTNYLGKDKDDYNITNLENIIKKEYYDLQYKIYALGI 1103

Query: 912  KDS-YPNKS 919
            K   + NK 
Sbjct: 1104 KKILFKNKK 1112


>gi|189502292|ref|YP_001958009.1| hypothetical protein Aasi_0914 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497733|gb|ACE06280.1| hypothetical protein Aasi_0914 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 913

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 96/613 (15%), Positives = 201/613 (32%), Gaps = 63/613 (10%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            L++ LK+    +      ++T    +  + +  +  +L A     + +  ++    LI 
Sbjct: 301 SLQDILKEIITYYQAGHHIYHTTLAVQQFIYAFGIITHLLASLRNLRAEKNIM----LIS 356

Query: 155 NTNDLLKK---RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +  +LL++    + + +I  K+    NH LIDE QD S  QW+ ++ L  +         
Sbjct: 357 DAANLLRQVIAENDTPFIYEKVGSFYNHFLIDEFQDISDFQWQNLKPLISNGLA------ 410

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
           +      VGD KQSIY + G++ +           +          + L  ++RS   I+
Sbjct: 411 TGHMSLLVGDAKQSIYRWRGSKWQL-------LSNKLEKEFTATKSLVLEHNWRSKPSIV 463

Query: 272 TVVDKVFSIPENAQG---------LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
              +  F+                L ++ST   +                Q +       
Sbjct: 464 HFNNTFFTQASKNLASHLQQEINQLEDNSTLKQQLNEQLQEIANVYAHAYQHIPAPVQSS 523

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             Q     ++      +   S    +I   +  ++         +K   + +DI +LVR 
Sbjct: 524 QDQGYVEANFLCEADLQEEKSSWKEQIKQRLPALLEE------LQKDGFRLQDIALLVRS 577

Query: 383 RKDTPLITFLT------RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             +   I+            K  YK S V  +   L     I  +++  +++  + D L+
Sbjct: 578 HAEGREISQSLLSYQHSEHAKPGYKYSAVSAESLYLGKSPWINIIISALKYLEDEIDILA 637

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
              ++           +++I   + E    +E  Q+                 E I    
Sbjct: 638 KTELVY----------LYQIYVCKKEQGISHELFQQNRVENDHNLLPT-----EFISEFY 682

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
             +    +  I+      Q   +         +  F +  L   Q + +     +   E+
Sbjct: 683 CLTKLPLYERIVKLVSIFQLNTTASKPF----IYTFQDIVLTYLQQNPAEHYNFLKWWEE 738

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                   H      + IMT+H AKGL+  VV +      +  + +   +    +     
Sbjct: 739 KGNKHALPHMEGEEAIPIMTIHQAKGLQFKVVIVPFCAWNLDHNTYKPPIIWCSTDKAPF 798

Query: 617 GIPIWIP---QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                +P       +  + +      +     ++  LLYV +TRA ++L I       N+
Sbjct: 799 STFPSLPLRYHKGLQETVYAQAYYEERMQVYLDHFNLLYVTLTRAEERLYIFSQQPGKNK 858

Query: 674 KKSNQRTWYDMVY 686
             +     Y  + 
Sbjct: 859 LDTTADLLYRTIS 871


>gi|126696548|ref|YP_001091434.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9301]
 gi|126543591|gb|ABO17833.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
            MIT 9301]
          Length = 1208

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 120/869 (13%), Positives = 258/869 (29%), Gaps = 141/869 (16%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND- 158
            LK    +F  ++D+    K    T       +       E KK   +L+F DLI  T + 
Sbjct: 325  LKLDFTKFNSLQDKIYKIKEGFFTEFVRIFTQLAYIKLIELKKSFSILNFNDLI-KTVEN 383

Query: 159  -LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
              L     ++    KI +    +L+DE QDT + QW +I+            ++    L 
Sbjct: 384  TFLDSEICNSNTLSKIQKRFKCVLVDEFQDTDITQWNLIKKFF---------NTKNHFLL 434

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGD KQ+IY F G + +  L  +               +  L  ++RS+  ++ V++K+
Sbjct: 435  CVGDPKQAIYKFRGGDIETYLDAR----------SNAIEVFNLTDNYRSSKKLIDVLNKL 484

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            +        L                      L   +    + +   +       F    
Sbjct: 485  YKNGLKQSKLKYSK------------------LTSTINEDINYEFKFKDVFEIVEFSKKE 526

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
             +             I +++    +      + I    I +L                  
Sbjct: 527  TD-------------IEDLVTHYIVNFILNNKEIDINKIAILTLNNSQCLDFKKKL---- 569

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            N + +     ++  + D  A   L      +L+     +   +  S       +D+    
Sbjct: 570  NQFNLPCKIQNKQNIFDTEASSLLFLFIECLLNPRSLKNITLLATSKFIEIKLEDLLDHG 629

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               +    +    +        + +  +  ++EL+   +  S      L L   +  +  
Sbjct: 630  ISNNLEILI---NKCITWSHELREKGFLNIVNELLINYKSSSIIQDSDLNLNLFQLSEIV 686

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                 N   D     +N      +N    +  +                   N + + T+
Sbjct: 687  EIELINNDFD-----INIVFNWYKNQLDHILRI-----STGEDFLTKDYNLQNGINLSTI 736

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H++KGLE  +V        + S+K  K    +   N D  I + I  + S+   V     
Sbjct: 737  HSSKGLEFEIVLCPYLS--IISNKSNKIKGPLWKSNIDRNIYVNISNNYSK---VEKFKL 791

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD----------MVYD 687
              ++   +E  RL+YV +TR+  +LI+      +N   +N                 V  
Sbjct: 792  IEEEDLFKESERLIYVALTRSKYKLIVFNDLEDTNNILNNDLLNNLENINIYKSNFQVRI 851

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWS---THHPENTPLEREETIKQLMDEQKIPKKLF 744
                 + +     T  +N + W    ++   ++   +       +    + + K    + 
Sbjct: 852  EKEKIKEIFSKFRTKRLNNNLWKIDNFNKKISNVFNSDQFISYSSYSSWIRKDKNIDAVI 911

Query: 745  SPIKNDINEPYILNPSTIDTKGKTN-----LESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            +  K+  +   I+  S                 L    +    G  +HK+L+      ++
Sbjct: 912  NQYKDYEDNISIIKDSNFKNSKNNPNYFSYPNPLSEFPKGNIAGTCLHKILERFEFRNDN 971

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA------------------- 840
             ++         N           +  +I R++   +                       
Sbjct: 972  NQELIDLIIEELNFHQIDTSLAFKVKDAILRIINISLGRELQNKKLVDIPNDYLIKELKY 1031

Query: 841  ---MSCDSYS--------------EVSVSGKINCPKKDIII------SGRIDQIS----- 872
               +S +  +              E     +      D+ I      SG ID +      
Sbjct: 1032 DLTLSYEGRNINSNDISNCFFLDQEYEFGEEYANKINDLQIMNKGFHSGCIDCVFPVGNK 1091

Query: 873  ISQQNIFIFEYKTHHHVPQEIEH-IPYTH 900
            +     ++ ++K++     +    +P  +
Sbjct: 1092 LEDSKWWVIDWKSNLISGSDNSDCLPRNY 1120


>gi|317009567|gb|ADU80147.1| Rep helicase [Helicobacter pylori India7]
          Length = 676

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/650 (15%), Positives = 199/650 (30%), Gaps = 121/650 (18%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
               +  L Q    +K + +    K +    +K   +      +   +      +   A 
Sbjct: 95  EHYPNLSLKQPKELRKLLESIVDTKNALTDDDKKPYTPQHLYALYSLYTNALKQEDFSAW 154

Query: 127 L-----------TLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKID 174
           L              + +   +E  KKK+  +D+ DL++     +L++            
Sbjct: 155 LSTKNPEHTPYAAFYENILEEFENTKKKHNYIDYNDLLLLFKKAMLERP----------- 203

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+ 
Sbjct: 204 SPYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADI 251

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +    +  +           +  L  ++RS+ +IL + ++V    E     + +   +
Sbjct: 252 SIISNFTQKYKN--------AQVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKS 303

Query: 295 IRH-RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               + + +     +   + +  +   + N ++ +     ++   +  A++ A  +    
Sbjct: 304 GHFNKPTLLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRAHNVPSK- 362

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                  +      K V  A DI  L+   KD      +                     
Sbjct: 363 ----RKGSASFFESKEVALALDICALIFNSKDIMAAIHIL--------------SYISDI 404

Query: 414 DHLAIKDLMALGRFILSQEDDLS-----FVCMLKSPLFNFS----EDDIFKICTQRHETE 464
                KD+      + + +   +         + +     +     ++IF +        
Sbjct: 405 GSNTAKDIHEALMLLGNGDLKSALIQPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNS 464

Query: 465 TVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            + +           K        +     L   A   SP      I+      Q F +R
Sbjct: 465 VIDKAFHSHPVLMHPKISLNGAKTLSDFFILYTKAPTHSPSALIKHIIE-SAFFQTFKTR 523

Query: 521 FGNEVIDVLD----EF--LNFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHN 570
              E     D    EF  L    R  +     SSL +    L        I  + +    
Sbjct: 524 LLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGE 583

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V +++VH +KGLE   V+++D     F +  +                           
Sbjct: 584 GVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGG--------------------- 622

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                         EE  RL YV +TRA + L +    N   E    +  
Sbjct: 623 -------------IEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEH 659


>gi|226951946|ref|ZP_03822410.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ATCC 27244]
 gi|294649208|ref|ZP_06726646.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter haemolyticus ATCC
           19194]
 gi|226837284|gb|EEH69667.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ATCC 27244]
 gi|292824875|gb|EFF83640.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter haemolyticus ATCC
           19194]
          Length = 659

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 96/661 (14%), Positives = 210/661 (31%), Gaps = 133/661 (20%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 65  AASEIVTRVEQHMGAQAKGLRASTFHTFCMYLLRRN-----PRAFGLTQFSIIDRDDQLL 119

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + ++ +  +         +       
Sbjct: 120 -----MFRLLRGKDKGNVLPKA--AELCDLYSYARNTKTKLSEALVAQLPQAIEYKAQ-- 170

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI-NHILIDEV 185
                 L   YE+ K++   LD++D++      L+          K      + +L+DE+
Sbjct: 171 ---ITELMKAYEQRKRERNFLDYDDILAIVAVHLQNSPE----LVKWVTGFCSALLVDEM 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 224 QDTNPLQWALLQPLVG-----------KVKLFCVGDDAQSIYGFRGADFENIHHFKERVP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      ++ L +++RST  IL + + +    +        +      +       
Sbjct: 273 --------DAEVLTLQMNYRSTQGILDLSNWLLDQSQIEYDKHLKAYRGQGLKP------ 318

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                         L   S+    A  I   I ++       + 
Sbjct: 319 -----------------------------QLHILSNEFEEANWI---IQDL-------NQ 339

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              +     + +VL+R       +            I         L +   +KD+++L 
Sbjct: 340 RHLQGAAWSEHMVLLRSGFSGRYLEGALIA----ANIPYRFIGGVKLLESAHVKDVLSLL 395

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  ++ +DDL+++  L +      +    K+  +  +   +    Q+    G    Q ++
Sbjct: 396 RVSVNPQDDLAWMRFL-TLWDGVGDVGASKLAQELIQLPDIEARCQRLERHGKVPQQAIL 454

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             +   +      +        L   +    + ++  +      D       ++      
Sbjct: 455 ILMQLDVLQQHVEACIGLALDALNE-QLENNYKNKDWSRRTKDFDLVKQLARKH-----R 508

Query: 546 SLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           SL E + E    P ++ +   + + + V ++T+H+AKG E  V ++       + H    
Sbjct: 509 SLGEFLEEYVLDPISVSEIDKTPDQDLVTLITIHSAKGTEQKVCYVPHVSPNQYPH---- 564

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  R+LYV +TRA ++LI+
Sbjct: 565 ------------------------------ARAQGDFDDVEEERRVLYVALTRAENELIL 594

Query: 665 C 665
            
Sbjct: 595 T 595


>gi|332171051|gb|AEE20306.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 689

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/646 (17%), Positives = 210/646 (32%), Gaps = 115/646 (17%)

Query: 61  CIEERFSLLSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-YK 118
             +++ SL+            K  I  Q+I       +       D   K+  +     +
Sbjct: 117 DPDDQLSLMKMACGNASEEYGKVRIKPQQILDIFSFARNTRSNLTDTIRKLLYKGKDDPQ 176

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           + +         ++L   Y+  KK+   LD++DL++   + L K + +  I         
Sbjct: 177 VTEDIATLRPQLEHLIKEYQLQKKRQQYLDYDDLLLVIANRLNKDEKAREILA---SSYE 233

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HILIDE+QDT+ +QW +++                  LF VGD+ QSIYSF GA+ K V 
Sbjct: 234 HILIDEMQDTNPLQWFLLKPF-----------EHICHLFCVGDDAQSIYSFRGADFKNVH 282

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             K              ++  L  ++RST +IL + + +             S+      
Sbjct: 283 LFKERV--------ADATVKVLDKNYRSTQEILDISNWLLEKSPVQYNKKLISSR----- 329

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                  G V +   V +Q +                          A  IA  I     
Sbjct: 330 -----GPGKVPVILNVNNQFE-------------------------EANYIANKI----- 354

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                           D L+L R +  T       + +    KI           +   I
Sbjct: 355 ----LEAFSSGGSSFSDFLILSRSQYYTRP----LQAVFLQKKIPYQTFGGRKFLEAAHI 406

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFS----EDDIFKICTQRHETETVYEYIQKFA 474
           KDL+++ R I +  D+++++    + +           + ++     E      +    +
Sbjct: 407 KDLVSVLRVINNPLDEIAWIRF-FTFIHGIGAVKATSYMTEVMQIAPEDIIPDTFTSIIS 465

Query: 475 NCGISKFQHVIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDE 531
                K     K + +     +      +      L  K  +     R G+  V+++L E
Sbjct: 466 GTEGEKVSKFYKTVFDNKGNVKQAIKELYSAMEFDLAMKYSKDWTEKRKGDFPVLEMLSE 525

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                              +S       +       + + V I TVH+AKGLE+ V F++
Sbjct: 526 NYATLGAFISEGILDNAAHVSGQNTLEGSKLTTTD-HQDHVTISTVHSAKGLEADVCFVL 584

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
           +   + +   +                                          EE  R+L
Sbjct: 585 NVSPKSYPSSYSLG----------------------------------NLDEVEEDRRVL 610

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           YV +TRA ++LII + + + N       T  ++  +S +  E +  
Sbjct: 611 YVALTRAKNELIITRATESINAFHHKTDTQEELGENSAYFLEELPD 656


>gi|15645527|ref|NP_207703.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Helicobacter pylori 26695]
 gi|2314046|gb|AAD07956.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Helicobacter pylori 26695]
          Length = 675

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 103/652 (15%), Positives = 192/652 (29%), Gaps = 126/652 (19%)

Query: 67  SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +  L Q    +K      +      + K P   + L      +     + +     
Sbjct: 95  EHYPNLSLKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWL 154

Query: 121 ----KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQ 175
                       L + +   +E  KKK+  +D+ DL++     +L++             
Sbjct: 155 SNKNPEHTPYAALYENILEEFENTKKKHNYIDYNDLLLLFKKAMLERP-----------S 203

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
               +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+  
Sbjct: 204 PYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADIS 251

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +    +  +           +  L  ++RS+ +IL + ++V    E     + +   + 
Sbjct: 252 IISNFTQKYKN--------AQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSG 303

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
           +             L     +    Q   ++      F  +      +  A ++   + +
Sbjct: 304 KFN--------KPTLLNYNDNIAQCQDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRS 355

Query: 356 M----IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                    +      K V  A DI VL+   KD      +                   
Sbjct: 356 YNVPSKRKGSASFFESKEVALALDICVLIFNPKDIMAAIHIL--------------SYIS 401

Query: 412 LTDHLAIKDLMALGRFILSQEDDLS-----FVCMLKSPLFNFS----EDDIFKICTQRHE 462
                  KD+      + + +  L+         + +     +     ++IF +      
Sbjct: 402 DIGSNTAKDIHEALMLLGNGDLKLALIQPNKEAKIYTKKKEITSMGLFEEIFALENSSRF 461

Query: 463 TETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
              + +           K        +     L   A   SP      IL      Q F 
Sbjct: 462 NSVIDKAFHSHPVLMHPKISLNGAKTLSDFFTLYTKAPTHSPSALIKHILE-SAFFQTFK 520

Query: 519 SRFGNEVIDVLD----EF--LNFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSAN 568
           +R   E     D    EF  L    R  +     SSL +    L        I    +  
Sbjct: 521 TRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQ 580

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V +++VH +KGLE   V+++D     F +  +                         
Sbjct: 581 GCGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGG------------------- 621

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                           EE  RL YV +TRA + L +    N   E    +  
Sbjct: 622 ---------------IEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEH 658


>gi|261206750|ref|ZP_05921441.1| UvrD/REP helicase [Enterococcus faecium TC 6]
 gi|289566432|ref|ZP_06446858.1| UvrD/REP helicase [Enterococcus faecium D344SRF]
 gi|260078880|gb|EEW66580.1| UvrD/REP helicase [Enterococcus faecium TC 6]
 gi|289161753|gb|EFD09627.1| UvrD/REP helicase [Enterococcus faecium D344SRF]
          Length = 728

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/585 (15%), Positives = 197/585 (33%), Gaps = 112/585 (19%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +++      +  D  +       +     L   L    +E K+   +L+F D++ N    
Sbjct: 228 VEEMVQLVKEKYDSIDKNARQPISERLYGLLMEL----QEQKRSQKLLEFNDVLQNLKSA 283

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L+  +    I++ I Q+ +++ IDE QDT+ +QWE+++ +T++         +   L  V
Sbjct: 284 LENEE----IQHYIGQKYDYLFIDEFQDTNPLQWEIVKRMTKE---------NRIKLIVV 330

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIY F G+EP  +   ++               + L  ++RS A I+   +++ S
Sbjct: 331 GDDDQSIYGFRGSEPAYIKNFEKEYPT---------KTLFLLTNYRSRAAIVQGANRLIS 381

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             +N            +       + G ++ +    ++ +S                   
Sbjct: 382 YNKN--------DRIPKAMIPAQKEAGVMEAYLFSDTKAES------------------- 414

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                  + +   I   I           +  + K+ ++L R    T  +          
Sbjct: 415 -------QWLIKQIQTFIQ----------KNGKYKESIILYRSASQTQQLVQSLLKTNIP 457

Query: 400 YKI----SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--FNFSEDDI 453
           + +       G        H   + ++     +  Q+ + ++  +L+  +      + + 
Sbjct: 458 FVLEADSPYEGIFGIKSFQHFY-QKIVHWQTALNLQKKNQAYQQLLRQLMADCYLKKSEC 516

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
            +  + +++   V +YI   +    SK   + ++   L    Q    +      L     
Sbjct: 517 DQYFSPKYQNIAVADYILSISPNLKSKSAEIREFEEALRKTDQHQEIYSLVQSYL----H 572

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH---- 569
             +          + + E +             LQ L  E +     +K    A      
Sbjct: 573 LPRIAKEIDQSDQEWIREEVKQHATF-----RRLQALSQETQATAKELKTRLIAYRQGKL 627

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + + I ++H +KGL    VFL+        +    +  ++                    
Sbjct: 628 DALCIQSIHKSKGLSYRNVFLIGCNEGSLPYNGATEKKVIDFNEIKAEPV---------- 677

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                       +T EE  RL YV MTRA ++L +C     ++ K
Sbjct: 678 ------------TTIEEERRLFYVAMTRARNRLYLCVPQMKNSRK 710


>gi|121610666|ref|YP_998473.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121555306|gb|ABM59455.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 1142

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/907 (12%), Positives = 256/907 (28%), Gaps = 144/907 (15%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI-----RDRFN 115
               E   LL   F        +N+    ++    D+   + +++DE +         +  
Sbjct: 305  DRTEAIELLEDEFPRLDLKHYRNLWDPALD--LSDMLSAISRAKDEVVDAAGYRALAQSM 362

Query: 116  TYKMFKSTLASLTL-----AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
              +      A +          L   YE     + +LDF DL+     L+   + SA +R
Sbjct: 363  AVRAGTDQDAKVRAQKCLEVATLFEAYERLLTVHQLLDFGDLVALPVRLV---EGSAEVR 419

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              +     H+L+DE QD +     +++++  D           R L+ VGD +QSIY F 
Sbjct: 420  DALRARHEHVLVDEYQDVNRASVRLLKAIVGD----------GRNLWVVGDARQSIYRFR 469

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA    + R                   +L +++RS   I+ V  +           +  
Sbjct: 470  GASATNIARFAIDFPGAQAA--------QLGVNYRSDERIVDVFTEF-----ARGMRASS 516

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                ++  + R  +   V+L     +  +                             +A
Sbjct: 517  GALPLKLTADRGTEGDRVELRVADSADDEISA--------------------------LA 550

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +I+ +              I+     VL         I            I  +     
Sbjct: 551  ASITALHAQG----------IRYGGQAVLCASNARLNAIAEGLEA----RGIPALHLG-- 594

Query: 411  ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC---TQRHETETVY 467
             L +   IK+L+AL           + V +  +        D+ ++       +     +
Sbjct: 595  SLFERPEIKNLLALLSLATDPRA-AAMVRVATTARHQMPLQDVMRVIEHLRAANPASLAW 653

Query: 468  EYIQKFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
              +    +      +  +  +  L     A            +      +        + 
Sbjct: 654  SAMHAEVDGLADDTREALSRLSTLFAGVSASTNPWTLLAGWTIDGLGLAKTLYQADDAQS 713

Query: 526  ID---VLDEFLNFTLRNEQNSYSSLQELISEL-------EQYPPTIKRAHSANHNEVRIM 575
                  + +FLNF  R  +     +  L+  +       E    +     + + + VR+M
Sbjct: 714  RMQGLAIWQFLNFCRRQPRGQGVPVLRLLDRIRRLVLLSEDRGLSQLPRSAESIDAVRLM 773

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H +KGLE   V L    +      ++    + P         +               
Sbjct: 774  TIHGSKGLEFDAVHLPGMVTSGLPRNNVPPRCLPPDGLIHGSEGLTG------------- 820

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
            I+ +K    EE   L +V ++RA D+L++  ++  ++ +  +   +   +         V
Sbjct: 821  IEAVKAGHDEEEECLFFVALSRARDRLLLYSYAKQADGRARSPSRFVAPIERFLARPAFV 880

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                   S                          +   +  Q  P+     +      P 
Sbjct: 881  PLRAGPPSTG------------------------VPLSITWQGRPQWTDIQVNLFERCPR 916

Query: 756  ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
                + +   G    E+            +++ + + +    E                 
Sbjct: 917  RFLYTHVLRLGGRRTETAFMKMH-----NVVNDVFEWLKREHETTSPTVDELAARFEEAW 971

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-S 874
                  ++      R +   ++   +   S    + +  I+    +  I    D ++   
Sbjct: 972  RSKGAAEHGYAEDYRRIGRRLVDFLIESRSRGVSAPASPISLGWAEGEILVSPDGVARGD 1031

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
               + +   KT        + I   +     ++   ++   P+  +    +     +   
Sbjct: 1032 GGRVTVRRVKTGKQRSNAFDDI--EYTV---LHLAAVQAYGPHAQVEVTYLTSETIQPME 1086

Query: 935  IPQNKLN 941
            I   KL 
Sbjct: 1087 ISSRKLE 1093


>gi|187926312|ref|YP_001892657.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|241665800|ref|YP_002984159.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|187728066|gb|ACD29230.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|240867827|gb|ACS65487.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 716

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/474 (14%), Positives = 148/474 (31%), Gaps = 74/474 (15%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + L   Y EAK+   VLD++DL++  + ++   +++A I        +HIL+DE QDT+
Sbjct: 215 LRTLFDAYVEAKQAQHVLDYDDLLLYWHAMVSDAELAAEI----GARFDHILVDEYQDTN 270

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++R+L              R +  VGD+ QSIY+F  A  + +L   R   +   
Sbjct: 271 RLQSSILRAL----------RPDGRGVTVVGDDAQSIYAFRAATVRNILDFPRHFSR--- 317

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   + L  ++RST  IL   + V          +  +     HR           
Sbjct: 318 ----PAHTVLLERNYRSTQPILDASNGVMRFATERFAKTLWTDRASTHRP---------- 363

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                     L      +  AR +A  + +              
Sbjct: 364 -------------------------RLISVRDEAEQARCVAEQVLHHREGG--------- 389

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +  K   VL R    +  +            I  V        +   +KD++++ R+  
Sbjct: 390 -LTLKSQAVLFRTASHSAPLEIEL----TRRNIPFVKYGGLKFLEAAHVKDVLSVLRWAE 444

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK--FQHVIKY 487
           +  + ++   +++  L         ++     E       +  +         +  ++  
Sbjct: 445 NPRNRIAGFRVIQ-LLPGAGPATAARVLDAMAEAADPIAALLAYEPPARLAGDWSTLMAL 503

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +  L               +        + +          LD+               L
Sbjct: 504 MQTLRVPKDSLEWAGELEAVGAWYSPHMERLHDDAAVRQGDLDQLARMAATYATRE-RFL 562

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            E+  +  +           + + + + T+H++KG E   V++++         
Sbjct: 563 TEMTLDPPELTSDESGDPYRDEDYLILSTIHSSKGQEWKAVYVLNAVDGCMPAD 616


>gi|114799490|ref|YP_761244.1| UvrD/REP helicase domain-containing protein [Hyphomonas neptunium
           ATCC 15444]
 gi|114739664|gb|ABI77789.1| UvrD/REP helicase domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 1137

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 115/763 (15%), Positives = 230/763 (30%), Gaps = 103/763 (13%)

Query: 31  INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEIN 90
           ++         G P   +     +  +  +    R  L     L       ++I++    
Sbjct: 281 LDLLRRFHDRAGLPPDPRLIDATEAIALLEDEFPRLRLKHFNDLWDPTDNLRSILSAISR 340

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            K   + +   +   +  ++ D   T +   +    L +A  +   YE+ K     +DF 
Sbjct: 341 AKDEVVDQHRYRELAQ--QMADAAETAEEQAAAEKCLEIAS-VYDLYEQLKSDRGAVDFG 397

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DLI     L++  +    +R +I +   H+L+DE QD +     ++R+L           
Sbjct: 398 DLIARPTALVESDEA---VRVEIQRRYEHVLVDEYQDVNRASVRLLRAL----------K 444

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                L+ VGD KQSIY F GA    + R +       T      + ++L  ++RS+ +I
Sbjct: 445 PDGSNLWVVGDAKQSIYRFRGASSYNIDRFE-------TEDFPGGTSLQLSTNYRSSQEI 497

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
                   +    A G   ++              G   +    VS         +    
Sbjct: 498 CNTFSTFATTRMAASGFQANAFK------------GKSGVAPSFVSVESKDHEIDE---- 541

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                             IA  IS      T            +D  V+ +       I 
Sbjct: 542 ------------------IAARISAACDDGT----------TFRDQAVICKGNARLAEIA 573

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                      I V+      L D   IK+ ++L   ++              P   F E
Sbjct: 574 AGLEA----RGIPVLFLG--PLFDRPEIKEALSLLSLVIDPRAMALTCIASMKPFRMFIE 627

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           D    I   R   + +    +          +        L+   +   P      +   
Sbjct: 628 DVAVAIEAVRTTKKPLPLDWRTVLETASGMSEGGRASAKALVGAFEEIEPTATAWQVFTK 687

Query: 511 KKG-RQQFISRFGNEVID-------VLDEFLNFTLRN--EQNSYS--SLQELISEL---- 554
               R +  +    +  +        L +F NF      E++ Y    L + I  L    
Sbjct: 688 IYLDRTRLAADIATQAREGNANPALALWQFQNFLRSVLPEKSGYPIRDLLDHIRRLVILS 747

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           ++       A +   N VR+MT+H +KGLE  ++ L    S        +   + P    
Sbjct: 748 DERDLRDLPATAQTINAVRLMTIHGSKGLEFKMLHLPSLTSDSIPRSAKQSRGLHPPDGM 807

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G       +    +              EE   L +V ++RA D L +   +  SN  
Sbjct: 808 IEGPMFRGSDAIDAGH-------------DEEQRCLFFVALSRAKDGLFLYAPNKKSNGH 854

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           + ++ ++ D +     + + +  ++       + +            + L   +   +  
Sbjct: 855 RQSRSSFVDDISGQLADQKPISAVRDV-VGEAERFTLEVDGVARMSPSQLATFDKCPRRF 913

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
               + +     +++     +    + ID       ++     
Sbjct: 914 FFAHVLQVGGRRLESAPMRMHNAVQAVIDELTARPDDTPDETE 956


>gi|67923682|ref|ZP_00517150.1| UvrD/REP helicase [Crocosphaera watsonii WH 8501]
 gi|67854482|gb|EAM49773.1| UvrD/REP helicase [Crocosphaera watsonii WH 8501]
          Length = 788

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 90/635 (14%), Positives = 181/635 (28%), Gaps = 63/635 (9%)

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF-NTY 117
           +        LL       + T +    +    +  P L   + +         ++     
Sbjct: 154 SGNPRRYQLLLEGAEFDGEETERLRRQSVLRTEVLPKLAHTIIREAKSSGLNPEKVWELS 213

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              +     L +A  L   Y+   +    +D++D+I+   ++++       IR    Q+I
Sbjct: 214 DYSQEHYQILAIAAGLYEQYQIVMRSLDFIDYDDMILGALNVIENP----KIRQVWQQQI 269

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKR 236
             +  DE QD+S +Q ++I +L            +   L  VGD  Q+I S F  A+   
Sbjct: 270 FAVFEDEAQDSSPLQEKLISALAS--------KENDCNLIRVGDPNQAINSTFTPADSVY 321

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                            +  + E+  + RS+  I+   + V                   
Sbjct: 322 FNWFC-------ETCKSQEKLAEMTQAGRSSKIIIDAANFVLKWVNGQWEYESKKQRKKH 374

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ---ESSASILARRIAYTI 353
             S        V  +     +  S+ +PQ  +         +             I   I
Sbjct: 375 INSDISEDKKEVIPFRLQSIETVSKDDPQPNANPEAVGEGLELYRPDDIYHTVDLIKERI 434

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             ++  ++  +             +LVR+ +    +    + L   +KI V         
Sbjct: 435 IELLNKNSDHNA-----------AILVRENRQGRFLAENLKELPKKHKIRVYEVGESERF 483

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEYIQK 472
             +   +++ L +FI            L+              I     E    + Y   
Sbjct: 484 SQIP-SEILNLLQFIDRPHSPDYLKNALEILQNRGLIPSQDLNILATYPEN---FLYPSS 539

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                        +Y   L+        +     +    K     ++        +  E 
Sbjct: 540 LIPEQKKPVLEARRYCCNLLQAKLELPDYQLIPFLGMTLKYTGAELATVQKLSERISQEL 599

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-----NEVRIMTVHTAKGLESPV 587
           +       + S  S+  ++ E+            +       N+V I+T+H +KGL+   
Sbjct: 600 VG------KFSLKSVLNVLREIINSEQFEGIEEDSEERYTRQNQVTIITMHKSKGLDWDY 653

Query: 588 VFLVDTGSQVFSHKHI------------KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           VFL      V                          +          P++        + 
Sbjct: 654 VFLPFLHEDVLPGNPWVPTAAKFLGEFTLAEVSRAQIRAAVHHQYINPENTLIIPNPDNA 713

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
            +  ++  + E  RLLYV MTRA   L +      
Sbjct: 714 WQEAQQLKKAEEYRLLYVAMTRAKRLLWMSAAKEG 748


>gi|219685727|ref|ZP_03540539.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii Far04]
 gi|219672722|gb|EED29749.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii Far04]
          Length = 1169

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 137/849 (16%), Positives = 265/849 (31%), Gaps = 107/849 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      +LIDE Q
Sbjct: 315  YKILKYIEKELEKIIKSTNTIDQNYIISNLKNYLKSED--QKLLNAIKNRYKIVLIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SL+Q E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLMQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADIAF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               N  +  + I L  + RS+  ++  ++++F        +S++        S    +  
Sbjct: 416  EIKNKIKTDARIVLKTNHRSSKKLIEPLNRIF-NNIYNNAISDEIEKIEFTNSLSNQKND 474

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
               +            N Q+    +   +  +        ++ A TI  ++    I  N 
Sbjct: 475  NNNIL----------INGQEIEGINIITTTTENEEDIY--QKTALTIKYLLTYGAIVENN 522

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
              R I+ +DI VL R + +  LI    +  +           +  +       ++  + +
Sbjct: 523  NIRNIEMQDIKVLCRGKNEINLIDKALKKEQIRTN-----KTQEKVLKTKEFNEIFYILK 577

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQHV 484
             +  ++   +   +L S + N   D    +  Q      E   E I            + 
Sbjct: 578  CLDRKQSFKNLNYILNSKILNVPWDLQKILIKQEKIQLIEEFIENITVLLEKNEITLINA 637

Query: 485  IKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR-- 538
            I  I    +  I IA                  +   I     E +   +  L    R  
Sbjct: 638  INKITLEKNLWIKIANNTKDPKIIEWAKNKINYKGLLIKEGKLENLKTYETALEIISRLY 697

Query: 539  NEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            +++ +  SL   +  L     + +        + ++  + ++T+H +KGL   +VFLV+T
Sbjct: 698  HKEQNIQSLISTLENLIINEESEEIEEKANNINNDNESIELITIHKSKGLSMNIVFLVNT 757

Query: 594  GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                 S+   KK H      D      +          + +  K+ +     E   + YV
Sbjct: 758  SPVENSNIFSKKNHFYKFYKDGNIEYDFFK--------LEENKKYARLKILSEEKNIFYV 809

Query: 654  GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            G TRA   L I K ++ +++     +++   +    H+    + I       K       
Sbjct: 810  GATRAKFALFITKTNSITSKLLEIAKSFT--IDGINHDFNIYQFISQKRLNKKKNNANVT 867

Query: 714  WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                 P+       +                     + +          D   +  LE  
Sbjct: 868  TKLIPPKPIIKNMFKKEYTSSFSSLTAHAHHKTFYENYDFKNTNYEKETDLDYEITLEET 927

Query: 774  LSDNQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYK-NL 824
            L   +  + G I+H  ++ I                   I     K        E + +L
Sbjct: 928  L--PKGKDSGNILHAAMEEIVFSTAKDTFDNFKQINIEIIKKQIQKINSNLNTIEIQNSL 985

Query: 825  LLSITRLLE------NPMMTTAMSCDSYSEVSVSG------------------KINCPKK 860
               I  +L       N  +      +   E+                       ++    
Sbjct: 986  TKMIYNILTYNIRAINTRLCDI--EELQKEMEFLIKINPKVQKQKYLFENHFEDLHIKLS 1043

Query: 861  DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKIL 911
            D  + G +D I  +   I+I +YKT++    + ++             +  Q  IY   +
Sbjct: 1044 DGYLKGIVDLIFKANNKIYILDYKTNYLGKDKDDYNITNLENIIKKEYYDLQYKIYALGI 1103

Query: 912  KDS-YPNKS 919
            K   + NK 
Sbjct: 1104 KKILFKNKK 1112


>gi|262067581|ref|ZP_06027193.1| ATP-dependent nuclease subunit A [Fusobacterium periodonticum ATCC
            33693]
 gi|291378696|gb|EFE86214.1| ATP-dependent nuclease subunit A [Fusobacterium periodonticum ATCC
            33693]
          Length = 1043

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 145/951 (15%), Positives = 294/951 (30%), Gaps = 167/951 (17%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEER 65
            LSLN++ E I K+   +    V  + +  +  +E      L    +   +    +  E +
Sbjct: 223  LSLNDNKEYIKKEKLSINEKPVEILRELFTY-LENDVKKDLYDVLKNDCKIYIGKSTEAQ 281

Query: 66   FSLLS--SFFLTQKFTP----QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
              LL   + F  Q  T       N + +  +K+  +    + + +D    +        +
Sbjct: 282  KELLVKNANFFFQNGTAGLIYNGNKLKKATDKEYKEYI--ISRQEDLKESLAKEVYNEIL 339

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN--------DLLKKRDVSAWIRY 171
                     L+      Y+  K ++    F D+ + T          L+ +  ++     
Sbjct: 340  IPYEEKIFELSLEFFKLYDMFKIRDKNFTFNDIAVYTYMAIFNKENGLIDENGLTDVFFE 399

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
             +D  I  I IDE QDTS++QW+++   T+            + +  VGD+KQSIY +  
Sbjct: 400  SLDMNIETIFIDEFQDTSILQWKILYEFTK----------IAKIVVCVGDDKQSIYGWRD 449

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             E +     K I                L  S+RS  +I++  +++FS            
Sbjct: 450  GEKRLFENLKTIL---------DAKKEPLTKSYRSDINIVSYCNELFSAISKK------- 493

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                               W    S+ +S+     ++      +      + +L    A+
Sbjct: 494  -----------------DNWAFNPSEINSKNQGYVKAICISDCNEEDNIYSVLLEELKAF 536

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                                   ++ ++ R   +   I  L    K    I  + N+   
Sbjct: 537  E-------------------PYDNVAIIARTNGELNEIAQLLENEK----IPYILNNEKN 573

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            ++++  I +   L ++++  E+DL+    + SPL N    DI  +   + E  +   + Q
Sbjct: 574  ISEYPGIFECFELLKYLI-YENDLALFNFISSPLSNIGTVDIEVLLKNKKEVLSYINFSQ 632

Query: 472  KFANC---GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
                       K    +  I E+    +     +    I+   +    F      +    
Sbjct: 633  DNNFILSLENKKVIKFLNKIIEIKKNFKNFKVQNLIYEIIKKFQFLDYFSKENEVK---N 689

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            + +F   T        S L  L    E     +    ++N   + ++T+H +KGLE    
Sbjct: 690  IYDFYLLTNSY----LSVLDLLNDYNE--NKLVLADLNSNKKGIELVTIHKSKGLEFKTT 743

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLN-DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            F++    +  S        +  + +     +           N   + +    K  QEE 
Sbjct: 744  FVIKNDKKSKSFDIDFLFEMNETYDKTTFSLFAKKGYKSILENCFKNKVAEYVKKIQEEE 803

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
                YV +TR  + L++  +    +EK        D          +  +I     +   
Sbjct: 804  TNNFYVALTRPKNNLVVIYNDRLFDEKPLENSILKDFFSCEIGEIHKKSEIIEEEVVE-- 861

Query: 708  EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
                                               L +  +N+           +D+   
Sbjct: 862  -------------------------ETSYNSSSYFLNTNSENE----------EVDSFEV 886

Query: 768  TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL-- 825
             N + LL   +    G+++H   + +    E +          K    +  K+   +   
Sbjct: 887  NNSKFLLETEEKRMTGILVHYFFENLKYGSEDEVAFAKNLCYKKYLSYFGKKKLDEIFSK 946

Query: 826  LSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRIDQISISQ-----QN 877
             +I   L         S      Y+E       +   K      RID++ I         
Sbjct: 947  ENIEIFLNRD--KEIFSKKWDYIYNEY---VLYDATDKKEY---RIDRLMIKDNEDGTGE 998

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY---PNKSLVCLLI 925
            I+I ++KT                 QL  Y  +LK ++    +  +    +
Sbjct: 999  IYIVDFKTGGKNEN-----------QLKTYASVLKKTFKELKDYKIKTNFL 1038


>gi|300245038|gb|ADJ94112.1| UvrD helicase [Hordeum vulgare subsp. vulgare]
          Length = 1185

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 115/709 (16%), Positives = 198/709 (27%), Gaps = 141/709 (19%)

Query: 70   SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                   K     + + Q         K+K KK      + +    T + ++        
Sbjct: 425  ERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGDL--T 482

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
               +  HY E       LD+ D I ++  LL K      +  +       I++DE QDTS
Sbjct: 483  GASILRHYNEILVSCNALDYHDFINSSITLLTKFPE---VYKECQTTCQAIVVDEFQDTS 539

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +Q+ +++ L                +  VGDE QSI+SF+GA+       +R       
Sbjct: 540  AMQYFLLKLLAS-----------HNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNH-- 586

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                    I L  ++RST  I+     +     N             H+          +
Sbjct: 587  ------KEIRLNKNYRSTRAIVEAATALIRNNTNR----------CHHKLVETDNPSGSK 630

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
            +  +     DS                           + A+ I  +I T +  + G+  
Sbjct: 631  ITVKECHSEDS---------------------------QCAFVIDKIIETTSSSAEGR-- 661

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                  I VL R++          R  K  + +               IK +MA+ R  L
Sbjct: 662  --DFGKIAVLYRRQITGKAFQVSFRNRKIPFNVH-----GVAFYRKKVIKAIMAILRTTL 714

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK--------- 480
               DD  +   LK  L    E+    I      +          A    S          
Sbjct: 715  PGCDDGPWRQALKILLPGDKEEKKKIIDHVEKISLARKCSFISAATDIFSAKVSGTFKRA 774

Query: 481  -FQHVIKYIHELIHIAQF----CSPHDFF---------TLILGAKKGRQQFISRFGNEVI 526
                  K +  L  +++F     S                +L  +        +  NE  
Sbjct: 775  QITQGRKVLSTLYSLSKFVEREQSVSAIISSAGNMLPQQYLLEKRAVIDNDGGKLLNEDN 834

Query: 527  DV---LDEFLNFTLRN---------------EQNSYSSLQELISELEQYPPTIKR-AHSA 567
            D+   L   ++                    E+   ++L+  I  +        R     
Sbjct: 835  DIRSVLQFLMDDVSDFLSTHFSSSGGASQTEEKGCTATLKAFIDYISLRETENFRSRKEE 894

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            N N + + T+H +KGLE  VVF+V          H     +  +                
Sbjct: 895  NKNSITLTTIHQSKGLEWDVVFIVQVNDSEIPLLHEYNGTVKEAGC-------------- 940

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                           T EE  RL YV MTRA  +L I   +  S+ +      +   +  
Sbjct: 941  ---------------TLEEERRLFYVAMTRARKKLYILHVTIDSHRQLLPPSRFLREIPG 985

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
               + +        +     +              P+          + 
Sbjct: 986  HLLDIQGEGAAIKYHGQPSGDISFDHAEGETSTEKPIANLNETSPYPEP 1034


>gi|189424989|ref|YP_001952166.1| UvrD/REP helicase [Geobacter lovleyi SZ]
 gi|189421248|gb|ACD95646.1| UvrD/REP helicase [Geobacter lovleyi SZ]
          Length = 1082

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 93/673 (13%), Positives = 189/673 (28%), Gaps = 129/673 (19%)

Query: 48   KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
            + A+ +++     C      L    F  +    Q       +    P+ +++L K     
Sbjct: 520  RTAEEMRERLAKSCGATAEDLFIGTFH-RFCLEQLRQDNPGLTVVGPESRQRLLKRLYAE 578

Query: 108  IKIRDRFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
              + +R        +  + + +A       Y +   +   LD + +I     L+   +  
Sbjct: 579  RGVAERSRISNAISAHCSGIQVALTEETKLYVDELVRLNALDLDAIIPVCVQLMNADES- 637

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
               + ++ Q + H+ +DE QD +  Q+++++ L E             T+FA+GD  Q+I
Sbjct: 638  --FKQRVQQAVQHLFVDEFQDLNRSQYDLVQLLAEQA-----------TVFAIGDPDQAI 684

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F G + +   R                 ++ L  ++R    I+     +        G
Sbjct: 685  YGFRGGDLRYFFRF---------AEVPDTVLLPLRTTYRLPRKIVQAAGSLICRNLICSG 735

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            L   +              G ++    +    +                          A
Sbjct: 736  LPLSAADNCP--------DGAIEFHRALSPGAE--------------------------A 761

Query: 347  RRIAYTISNMIGTDTIFSNGKKR--------VIQAKDILVLVRKRKDTPLITFLTRFLKN 398
              I   I  +IG    FS    R         +   D  VL R  +              
Sbjct: 762  ELIVRRIEELIGGVDSFSRSTGRSGNTPSPDNLSFADFAVLFRLGRQA----EELAEALT 817

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
               I               ++ L  L +   S  D+++    L   L       + ++ +
Sbjct: 818  RRGIPYQLVGATPFYMESKLRPLYQLLQA-ASGSDEIALWLSLFGALKGVGTTTLDRLES 876

Query: 459  QRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
            +       +E               + +   +  L   A          + L        
Sbjct: 877  ELPLRGDFFELAAEHDHTPATGKALKLLATTLDRLQKSAADQGVAAALRISLPVFGLE-- 934

Query: 517  FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                     +D  D  L           + L      L+QY              V +M+
Sbjct: 935  ---------LDDADRLLQMAEGF----GTDLSAFSHHLKQYASATVYDP--RAEAVALMS 979

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
             H++KGLE PV+F+      +F    +   ++                            
Sbjct: 980  CHSSKGLEFPVIFMTGLEEGIFPCTLMGTPNV---------------------------- 1011

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIIC--KHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                    EE  RL YVG+TRA  ++I+    +     +       +   +     +   
Sbjct: 1012 --------EEERRLFYVGLTRAKQRVILTASGYRGWMGQGLRELSRFITELPAELVDKPE 1063

Query: 695  VKKIKLTNSINKD 707
              + +    +  +
Sbjct: 1064 AGRQRRRAPVESE 1076


>gi|125973485|ref|YP_001037395.1| UvrD/REP helicase [Clostridium thermocellum ATCC 27405]
 gi|256005382|ref|ZP_05430347.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|281417686|ref|ZP_06248706.1| UvrD/REP helicase [Clostridium thermocellum JW20]
 gi|125713710|gb|ABN52202.1| UvrD/REP helicase [Clostridium thermocellum ATCC 27405]
 gi|255990701|gb|EEU00818.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|281409088|gb|EFB39346.1| UvrD/REP helicase [Clostridium thermocellum JW20]
 gi|316940278|gb|ADU74312.1| UvrD/REP helicase [Clostridium thermocellum DSM 1313]
          Length = 706

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 95/557 (17%), Positives = 177/557 (31%), Gaps = 109/557 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE+ KK    +D++D++  T  LLK+      I   + +  ++I +DE QDTSL+
Sbjct: 184 DIYNAYEKRKKSEGYIDYDDMLTGTYKLLKRN---TGITNMLRERYHYINVDESQDTSLV 240

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E+I+ +                +F VGDE QSIY F  A P+ +L  K+         
Sbjct: 241 QHEIIKLVAH----------PKNNIFMVGDEDQSIYGFRAAFPQALLDFKKTYP------ 284

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I+ +  ++RST  I+   +      +     +  +                 + +
Sbjct: 285 --DAKILLMERNYRSTKSIVIPANIFIKQNKGRYEKNMYTENEEGEAVVFKHVKNRNEQY 342

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             + S   S+ N  + +     +         +    I + I +        +    +  
Sbjct: 343 AYLTSVLKSESNLSECAVLYRNNISAIPLVDYLEYNNIPFYIRD-------TNLHFFKHW 395

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+L  +R                                               L  
Sbjct: 396 VVNDVLSFIR---------------------------------------------LALDP 410

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D  +F  +        S +    +     + + V E +  F N       + +KY+   
Sbjct: 411 CDIEAFGQIYYKIGAFISREMFEYVAENMGKGKGVMETLLNFPNLPEDTC-NAVKYLAGQ 469

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
           I    +  P      I   +   +++I R   E+   +D   N+ +   ++  S +    
Sbjct: 470 IETIDYLKPLKAIEFI-EKECEYEKYIRRASKEMGYSIDSL-NYIIDGLKSIASRVDSFD 527

Query: 552 SELEQYPPTIKRAHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               +         ++      N V + T+H++KGLE   V+++D     F         
Sbjct: 528 EFFGRLSILKSAIENSGKNRYKNAVVLTTIHSSKGLEFDKVYMIDLVDGQFPSSKSISDC 587

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                        K    +  EE  RL YVG+TRA   L +   
Sbjct: 588 -----------------------------KEGNDALMEEEVRLFYVGVTRARKYLELITF 618

Query: 668 SNTSNEKKSNQRTWYDM 684
           S  +N+  S  R  +  
Sbjct: 619 SKVNNKPVSVSRFVHRF 635


>gi|258652354|ref|YP_003201510.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258555579|gb|ACV78521.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 1099

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 114/958 (11%), Positives = 236/958 (24%), Gaps = 158/958 (16%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
              V  ++ Y    +        +    L  A      +     L +  L  +       
Sbjct: 121 EPMVRTLHGYAFAVLRRQAARSGESIPRLLAA---GESDHVVRELLAGHLDGEGGGWPEA 177

Query: 85  ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
           +   +   +   + +    +     I          +        A      Y++     
Sbjct: 178 LRPALGSPTFAAELRELLLRTAERGIGPSRLAEWGRRRRRPEWQAAARFAREYQDVADLR 237

Query: 145 C-------VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
                    LD  +L                +       +  + +DE QD    Q  +I 
Sbjct: 238 QGTAGLGPALDQAEL----TRAALALLADDAVLAHEQGLVRRLFVDEYQDVDPAQARLID 293

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L+          S    L  VGD  QSIY+F G++P  + R                  
Sbjct: 294 RLS----------SGADELVVVGDPDQSIYAFRGSQPGAMRRI------------TVEKT 331

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           + L +S R    +LT   +V +                               W      
Sbjct: 332 VSLDVSHRLRPAVLTATRRVAAALPGG--------------------------WPHRDLT 365

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
              +  P +    ++  +  +       A  +A  +                 +    + 
Sbjct: 366 SAGEPRPAEVVVRTFSTAASE-------AAFLADELRRAHLRG---------GLAWSRMA 409

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           VLVR          + R       +          +D   ++ ++ L    L        
Sbjct: 410 VLVRS---PAADLPVVRRALAVAGVPCATGLVDPGSDDPVVRSILRLLDCALEPARLTGE 466

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYE-----------------YIQKFANCGISK 480
             +       F  D       +R                           +       + 
Sbjct: 467 RAIDLMTAPGFGMDTDAVRRLRRRLRVAHPANSGPTADLVAAALLGAPLPEDLPEDLSAP 526

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS------RFGNEVIDVLDE--- 531
                  +  +  +A+   P                 ++      R G      LD    
Sbjct: 527 VIAARTLLESVRSVAEDPDPRVPLWRAWQGLGLADALLAASLRGGRAGFRADRSLDAVLG 586

Query: 532 FLNFTLRN-EQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             +       +  Y+ ++  ++E+        P   +       + V +++ H+AKGLE 
Sbjct: 587 LFDAAGELVARLPYAGVRAFLAEVSDRRIGLDPAGARGPGGPGGHGVALLSAHSAKGLEW 646

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            +V L       +     ++  +      D    +                         
Sbjct: 647 DMVCLAGVSEGRWPVLRRRQSLLGLDELLDAEDGVASGNIDGPGGG----------DALN 696

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL YV  TR   +L+    ++                       E+    +      
Sbjct: 697 EERRLFYVAATRTRGRLVATSVADQDTVPSRFLTELAGPAELPHGWPEQPDGSRRRRLQL 756

Query: 706 KDEWIAYEWSTHHPENTPLEREE-------------TIKQLMDEQKIPKKLFSPIKNDIN 752
            D       +   P                            D   +     S       
Sbjct: 757 TDLVADLRRAVTDPTTPEPTATAAARQLARLAAAGVDGAHPRDWFGLAGLSTSAAPVADG 816

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFN-------RGLIIHKLLQVIFT-LPEHKRKNF 804
            P  L+PST++   +  L ++L      +        G+++H L+  +   +P       
Sbjct: 817 APVTLSPSTVEALTRCPLRAVLERRGARSGTSQQQIEGIVMHALVDGLARGVPRADLVAE 876

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC------- 857
           +  +        P         ++  +L       A        V+   +++        
Sbjct: 877 MERFLAGRTN-LPPWLIARTRRALELMLTAAQTWMAELPADRRPVATEAQLSTWLPQSDE 935

Query: 858 --PKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
               + + ++GR D+I  +    + I ++KT   VP           AQL++Y+  L+
Sbjct: 936 AGRGRPVKVNGRADRIDQAPDGSMIIVDFKTGASVPSRAAVEQN---AQLAVYQLALR 990


>gi|308184696|ref|YP_003928829.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Helicobacter pylori SJM180]
 gi|308060616|gb|ADO02512.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Helicobacter pylori SJM180]
          Length = 675

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 105/695 (15%), Positives = 201/695 (28%), Gaps = 127/695 (18%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQK- 82
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKL 111

Query: 83  -----NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA-- 135
                +      + K P   + L      +     + +      +     T         
Sbjct: 112 LESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSTKNPEHTPYAAFYENI 171

Query: 136 --HYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              +E  KKK+  +D+ DL++     +L++                 +L DE QDT+ +Q
Sbjct: 172 LDEFENTKKKHNYIDYNDLLLLFKKAMLERP-----------SPYKEVLCDEFQDTNPLQ 220

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +       
Sbjct: 221 ESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN------ 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +  L  ++RS+ +IL + ++V    E     + +   + +             L  
Sbjct: 263 --ARVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGKFN--------KPTLLN 312

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM----IGTDTIFSNGKK 368
              +    Q   ++      F  +      +  A ++   + +         +      K
Sbjct: 313 YNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESK 372

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            V  A DI VL+   KD      +                          KD+      +
Sbjct: 373 EVALALDICVLLFNPKDIMAAIHIL--------------SYISDIGSNTAKDIHEALMLL 418

Query: 429 LSQEDDLS-----FVCMLKSPLFNFS----EDDIFKICTQRHETETVYEYIQKFANCGIS 479
            + +  L+         + +     +     ++IF +         + +           
Sbjct: 419 GNGDLKLALTHPSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVINKAFHSHPVLMHP 478

Query: 480 KF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----E 531
           K       ++     L   A   SP      I+      Q F +R   E     D    E
Sbjct: 479 KISLNGAKMLSDFFTLYTKAPIHSPSALIKHIIE-SAFFQTFKTRLLKERSKNKDGSYNE 537

Query: 532 F--LNFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           F  L    R  +     SSL +    L        I  + +     V +++VH +KGLE 
Sbjct: 538 FKKLQAQKRFNEKMDLLSSLAKNYQNLGHFLNGTLIGSSEATQGEGVNLLSVHASKGLEF 597

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V+++D     F +  +                                         E
Sbjct: 598 KDVYIIDLMEGRFPNHKLMNTGGG----------------------------------IE 623

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
           E  RL YV +TRA + L +    N   E    +  
Sbjct: 624 EERRLFYVAITRAKENLWLSYAKNELRENAKPKEH 658


>gi|308177918|ref|YP_003917324.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
           Re117]
 gi|307745381|emb|CBT76353.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis
           Re117]
          Length = 707

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 106/773 (13%), Positives = 211/773 (27%), Gaps = 171/773 (22%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQ--ASQTQCIEERFSLLSSFFLTQKFTPQKN 83
              +++   +     +G  T    A  L+Q      Q I      L            + 
Sbjct: 71  RAAAEMRTRLRQLGASGVQTRTFHAAALRQLQYFWPQAIGGSLPNLVEHKAPLIAEAARR 130

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKK 142
           +          DL  +++ ++                        +    +   YEE K 
Sbjct: 131 LRISSDRAMVRDLAAEIEWAKVSMHTPESYAKIASSRDLPNGLEAVSMARIFQTYEELKD 190

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              V+DFED+++ T  +L+  +    +   + Q+  H ++DE QD S +Q  ++      
Sbjct: 191 DRSVIDFEDVLLLTIAILEDNE---KVAANVRQQYRHFVVDEYQDVSPLQQRLLDLWLGQ 247

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        L  VGD  Q+IYSF GA P  +L       +          +++L  
Sbjct: 248 ----------RNELCVVGDASQTIYSFTGARPDFLLNFSARFPE--------AKVVKLVR 289

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            +RST +++ + +KV +                  R            W + +     + 
Sbjct: 290 DYRSTPEVVNLANKVLAN-----------------RRIESQVPDRNVTWPEPLELIAQRD 332

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
           +     +    D   +       A  +A  I  ++                 +I +L R 
Sbjct: 333 HGPAPEFFEATDDENE-------AEEVAQRIKKLLKNGQ----------DISEIAILYRT 375

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +             Y I  V            +K+ M   R                
Sbjct: 376 NGQSQAFEQALTA----YSIPYVMRGAERFFSRREVKEGMLALRA--------------- 416

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +   +     +  + + Y     + G    +   + +  L+ +A       
Sbjct: 417 ----GLSVAEDAPVAQMVRDILSSHGYSVNAPSGGTGAVRQRWESMSALVRLADEV---- 468

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
                                             L+ +Q   ++L +++ ELE       
Sbjct: 469 --------------------------------VALKKQQEIDATLHDVVKELEDRAA--- 493

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
             H+   + V + + H AKGLE   VFLV     +                         
Sbjct: 494 IQHAPTLDGVTLASFHAAKGLEWDAVFLVGLNEGLVP----------------------- 530

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                       +     ++  +E  RLLYVG+TRA   L +      +   ++      
Sbjct: 531 ------------ISYAKDQAGFDEERRLLYVGITRARMHLFLSWSLARTPGGRA------ 572

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                  +    +  IK     +  +  AY                +      E+K+ + 
Sbjct: 573 -----HRYPSRFLDGIKSVRQASSRQPAAYRKREQKVTPAVCTTCGSFLTSAKERKLKRC 627

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
              P   D      L     +      + + +          ++  + +    
Sbjct: 628 ASCPAAYDEALFENLREWRSEIAQSNAVPAFVIFTDA----TLM-AIAEHQPD 675


>gi|120402800|ref|YP_952629.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119955618|gb|ABM12623.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
          Length = 1038

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 109/997 (10%), Positives = 269/997 (26%), Gaps = 168/997 (16%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
              G     +             F V  +    + S      T  ++   +++       
Sbjct: 73  ALLGAGARSAVREPLVRTVHSYAFAVLRLAAQRNGSPPPRLITSAEQDGIIRELLAGDVE 132

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           +   S +           +  + T     +  DL  +  +   + + ++         + 
Sbjct: 133 DGDASPVR-----WPERLRPALSTVGFATELRDLMARCSERGVDPLALQRIGRAAGRPE- 186

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFE------------DLIINTNDLLKKRDVSAWIR 170
                  A      YE+       +               +L+    +        A + 
Sbjct: 187 ----WQAAGRFAQAYEQVMLLRAAVGMAAPQATVPALGAAELVGAALEAFATD---ADLL 239

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                 +  +L+D+ Q        ++  L           +        GD  Q+++ + 
Sbjct: 240 AAERARVQLLLVDDAQHLDPQAARLVEVLA----------TGAELAVIAGDPHQTVFGYR 289

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+P  +                +   + L  S R    +   +  V      A+   E 
Sbjct: 290 GADPALLR--------------GEGPALTLTRSHRCANPVADAIGAVGRRLPGAEATREF 335

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +              G+V +        +S                              
Sbjct: 336 TG---------SDAPGSVTVQIAASPHAESAL---------------------------- 358

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-R 409
             I++ +    +        +    + V+VR     P +            + +      
Sbjct: 359 --IADALRRAHLVD-----GVPWSQMAVIVRS---VPRMGAALGRALTAAGVPLDLPQPE 408

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET------ 463
             L +  A++ L+ +        D    + ++  P+       + ++             
Sbjct: 409 VPLAEQPAVRALLTVLEATADGLDGERALALVTGPIGRVDPISLRQLRRALRRAAPESPG 468

Query: 464 -------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQ 515
                  + +       A+      + V   +      A+  S P             ++
Sbjct: 469 GFSDLLVDALQRDTPALADGQARALRRVCAVLTAARRSAREGSDPRHTLWQAWHRSGLQK 528

Query: 516 QFISR------FGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH 565
           ++++        G +    LD      +   +   + + +SL+ L+  +        R  
Sbjct: 529 RWLAASERGGPAGAQADRDLDAVTAMFDVAEQYVARTAGASLRGLVDHITALALPPARRD 588

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            A  + V +++ H+A G E   V L      ++ +   +   +      D    +  P  
Sbjct: 589 EAAPDAVALLSAHSALGHEWEFVVLAGVQEGLWPNVSPRGGVLATQQLVDVIDGVCAPGQ 648

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            + ++         +     E  RLL   M RA  +L++    +   +      ++   +
Sbjct: 649 HTLSS---------RAPLLAEEWRLLIAAMGRARSRLLVTAVDSDCGDDAMLPSSFCHEL 699

Query: 686 YDSFHNDERVK-----------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                  +                 L   +      A         +    +   + +  
Sbjct: 700 AALATEPQSQPAPPVRAPRVLAPSALVGRLRSVVCAAPGAVDDVERDCAAAQLARLAEAG 759

Query: 735 DEQKIPKKLF--------SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN----- 781
                P   +         P+  D  +   L+PST+       L  LL  +         
Sbjct: 760 VHGADPASWYGSRELSSAEPLWEDGEQVVTLSPSTLQMLSDCPLRWLLERHGGSRGRDVR 819

Query: 782 --RGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLLSITRLLENPMM 837
              G ++H L+                 +     +A+ +   E    L  ++  L     
Sbjct: 820 STLGSLVHALVSESGRTESQLLNGLEKVWEELPFDAQWYSDNERVRHLEMLSTFLRWREG 879

Query: 838 TTAMSCDSYSEVSVSGKINCPKKD---IIISGRIDQISIS-QQNIFIFEYKTHHHVPQEI 893
           T     +  +E+ V G+I  P  +   + + GR+D++    +  + + + KT      + 
Sbjct: 880 TRGELTEVGTEIEVDGQIAAPDGELPAVRLRGRLDRLERDSEGRLVVIDLKTGKSPVSKD 939

Query: 894 EHIPYTHIAQLSIYEKILKD---SYPNKSLVCLLIYV 927
           +       AQL++Y+  +     +  ++     L+Y+
Sbjct: 940 DAQS---HAQLAMYQLAVAAGLLADGDEPGGGRLVYL 973


>gi|1568655|gb|AAB51777.1| ORF993; upstream of trxA gene [Rhodobacter sphaeroides]
          Length = 331

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 127/368 (34%), Gaps = 43/368 (11%)

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                +R+MTVH +KGLE+P+V L DT  +      +  +        + G  +W   + 
Sbjct: 2   EAAGRIRVMTVHGSKGLEAPIVILPDTADRKPRSDELFTL--------EGGARVWKTPAA 53

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                ++   +  +     E  RLLYV MTRA   LI          K      W+D++ 
Sbjct: 54  ESPPQIAAARERRRARDAAENLRLLYVAMTRAQCWLIAAAAG-----KLETGGAWHDLIR 108

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                            +++        ++       L         +   ++       
Sbjct: 109 QGMEAAVASGVTTGALVLDEGLCPRRAQASGAAARPVLPAGLWPAADVRRPEVC------ 162

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                       PS +    +    +     +   R L +H+LL+ +   P  + +    
Sbjct: 163 ------------PSALGGAKRCP--ATRCPPRKAWRWLAVHRLLEHLPLHPPEEWEAAAR 208

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG 866
                        +   +L     +L    +  A+   +  EV+V+ ++        +SG
Sbjct: 209 ELL------PDLPDVAPVLAEARAVLSAEPLAEALVPHALLEVAVTAEVA----GRRLSG 258

Query: 867 RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            ID++ +    +   +YKT+  VP   E +P   + Q+  Y + L   YP +++   +++
Sbjct: 259 TIDRLVVEPDRVLAVDYKTNRVVPDRPEEVPEGILRQMGAYAEALAQIYPGRTIETAILW 318

Query: 927 VSEPKVFI 934
               ++  
Sbjct: 319 TQAARLMR 326


>gi|210135102|ref|YP_002301541.1| Rep helicase [Helicobacter pylori P12]
 gi|210133070|gb|ACJ08061.1| Rep helicase [Helicobacter pylori P12]
          Length = 675

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 101/649 (15%), Positives = 198/649 (30%), Gaps = 120/649 (18%)

Query: 67  SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +  L Q    +K      +      + K P   + L      +     + +     
Sbjct: 95  EHYPNLSLKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWL 154

Query: 121 KSTLASLTLAKYLNA----HYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQ 175
                  T    L       +E  KKK+  +D+ DL++     +L++             
Sbjct: 155 SHKNPEHTPYAALYENILDEFENTKKKHNYIDYNDLLLLFKKAMLERP-----------S 203

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
               +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+  
Sbjct: 204 PYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADIS 251

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +    +  +           +  L  ++RS+ +IL + ++V    E     + +   + 
Sbjct: 252 IISNFTQKYKN--------AQVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKSG 303

Query: 296 RH-RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           +  + + +     +   + +  +   + N ++ +     ++   +  A++ A  +     
Sbjct: 304 KFNKPTLLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRAHNVPSK-- 361

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                 +      K V  A DI  L+   KD      +                      
Sbjct: 362 ---RKGSASFFESKEVALALDICALLFNPKDIMAAIHIL--------------SYISDIG 404

Query: 415 HLAIKDLMALGRFILSQEDDLS-----FVCMLKSPLFNFS----EDDIFKICTQRHETET 465
               KD+      + + +   +         + +     +     ++IF +         
Sbjct: 405 SNTAKDIHEALMLLGNGDLKSALIQPNQEAKIYTKKKEITSMGLFEEIFALENSSRFNSV 464

Query: 466 VYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           + +           K       ++     L   A   SP      IL      Q F +R 
Sbjct: 465 IDKAFHSHPVLMHPKISLNGAKMLSDFFILYTKAPTHSPSALIKHILE-SAFFQTFKTRL 523

Query: 522 GNEVIDVLD----EF--LNFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHNE 571
             E     D    EF  L    R  +     SSL +    L        I  + +     
Sbjct: 524 LKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEAMQGEG 583

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +++VH +KGLE   V+++D     F +  +                            
Sbjct: 584 VNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGG---------------------- 621

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                        EE  RL YV +TRA + L +    N   E    +  
Sbjct: 622 ------------IEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEH 658


>gi|255017705|ref|ZP_05289831.1| ATP-dependent DNA helicase [Listeria monocytogenes FSL F2-515]
          Length = 367

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/449 (16%), Positives = 136/449 (30%), Gaps = 94/449 (20%)

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L  ++RST  IL   ++V     N +  +                     LW       
Sbjct: 1   MLEENYRSTKRILEAANRVIENNGNRKPKN---------------------LW------- 32

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
            S    ++  +        +       A  +   I   +           R +   D  +
Sbjct: 33  TSNAEGKKIFYHKALTEKEE-------AAYVVMKIQEEVNN-------SNRPL--SDFAI 76

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L R    + ++            ++          D   IKD++A  R I + EDD+S  
Sbjct: 77  LYRTNAQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLT 132

Query: 439 CMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVIKYIHELI 492
            ++  P        + K+         +++E + +                    I    
Sbjct: 133 RIVNVPKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFT 192

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQ 548
            +  F S  +    IL     R    +    E     + +DEFL+ T   E+ +   +L 
Sbjct: 193 QMQDFLSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLV 252

Query: 549 ELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
             +++L       K           V +MT+H+AKGLE PVVFLV     +F H      
Sbjct: 253 AFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS----- 307

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                            ++   EE  RL YVG+TRA ++L +  
Sbjct: 308 -----------------------------RAIYEEDEMEEERRLAYVGITRAEEELFLTS 338

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
             +     + +       + +   +   +
Sbjct: 339 AYSRMLYGRPSSNQESRFIGEIPRDLLEL 367


>gi|289571423|ref|ZP_06451650.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T17]
 gi|289545177|gb|EFD48825.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T17]
          Length = 690

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 90/684 (13%), Positives = 187/684 (27%), Gaps = 116/684 (16%)

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            ++     VLVR+  D   I    R       I         L     + +++A+ R + 
Sbjct: 10  GVKPPTAAVLVRRNADAAAIADTLRA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVA 65

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-----------------------QRHETETV 466
                 + + +L  P +     D+  +                            +   +
Sbjct: 66  DPTAGAAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCL 125

Query: 467 YEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            + I        ++  G  +   +   +  L       S  D    +        +  + 
Sbjct: 126 ADAISDPGSAEGYSVAGYGRIGALAGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRAS 184

Query: 521 ----FGNEVIDVLDEFLNFTLRNE-----QNSYSSLQELISELEQYPPTIKR----AHSA 567
                G    + LD F +           ++S +S+  L++ L+              + 
Sbjct: 185 APVSGGWAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTV 244

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + V+++TVH AKGLE  VV +      VF     +   +       P +      + +
Sbjct: 245 ACDRVQVLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGA 304

Query: 628 RNNIVSDLIKHLKKSTQEEYN----------------RLLYVGMTRASDQLIICKHSNTS 671
               V D      +    +                  RLLYV +TRA D L++  H    
Sbjct: 305 HGIPVLDTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGP 364

Query: 672 NEKKSNQRT------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
              K    +                     +V          ++  L ++  +  W A  
Sbjct: 365 TGTKPRGPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADP 424

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN-------DINEPYILNPSTIDTKG 766
            +    +              D       +  P +        D++              
Sbjct: 425 LAARRGDVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAP 484

Query: 767 KTNLE---------SLLSDNQTFNRGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKL 815
              L           L+ D     +     +L+  +   P+      +   ++  +    
Sbjct: 485 ARGLPNHLSVSSLVELVGDPVGARQ-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGA 539

Query: 816 WPAKEYKNLLLSITRLLENPM----MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRI 868
               +  +L  +  R + +P     +  A +  S++     +V      P  D ++ GRI
Sbjct: 540 ELLFDLGDLPGAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRI 599

Query: 869 DQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLI 925
           D + +       + ++KT                 QL++Y          P  S+     
Sbjct: 600 DAVFVDPDGGATVVDWKTGKPPHGPAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFY 657

Query: 926 YVSEPKVFIIPQNKLNKAFAEIST 949
           YV      +  +       A + T
Sbjct: 658 YVRSGITVVPDELPAPGELAMLLT 681


>gi|153852732|ref|ZP_01994169.1| hypothetical protein DORLON_00151 [Dorea longicatena DSM 13814]
 gi|149754374|gb|EDM64305.1| hypothetical protein DORLON_00151 [Dorea longicatena DSM 13814]
          Length = 743

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 90/541 (16%), Positives = 164/541 (30%), Gaps = 91/541 (16%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y    ++  ++D++D ++   ++L+K      +         +I +DE QDTS IQ
Sbjct: 179 IYREYCRQMREQKLMDYDDQMLYAYNILRKDPG---VLAYFQNRYPYICVDEAQDTSKIQ 235

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +I  L                LF VGDE QSIY F  A P+ +L  ++          
Sbjct: 236 HAIIALLAA----------GTGNLFMVGDEDQSIYGFRAAYPEALLSFEK--------KH 277

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ +  +FRS A I+   DK              +                     
Sbjct: 278 SGAKVLLMEENFRSNAKIVEAADKFIQKNTLRHEKHMRAAR------------------- 318

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             S      Q       A+     ++ M G++    +  +    
Sbjct: 319 ---------EAGADIREISLKSRKAQYVYLMKAAQECTTGMAGMSGSE---EHRGRADAS 366

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQ 431
             +  VL R  +           L     I     +       H  + D+  + RF +  
Sbjct: 367 VTETAVLYRDNECAIP----LIDLLERKNIPYRMRNADLSFFTHRTVLDVQNIIRFAMDP 422

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           +D   F+ +       F++ D  +      E +     +           +  I+ +   
Sbjct: 423 KDTELFMQIYYRLKLFFNKKDALRYAQISQEKDMEVLDVALKYGNLEKYQEDNIRNLKRQ 482

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
           +         +    IL     +          +     E +        +   S ++L+
Sbjct: 483 MVRILNMPGDEAVNQILTYMGYQDYLKKMG---MNANKLETVKLI----GSRVESPEKLL 535

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             LE+    I+   S       + T+H +KGLE   V+L+D    +   K +        
Sbjct: 536 ERLEELRTIIQEKVSDKDCPFILSTMHASKGLEYDTVYLLDVMDGILPEKVLANPRT--- 592

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       +  T EE  RL YVG+TRA +QL +   +  S
Sbjct: 593 ------------------------ASKEELETYEEERRLFYVGVTRAKNQLNVFTTNKPS 628

Query: 672 N 672
            
Sbjct: 629 K 629


>gi|317180239|dbj|BAJ58025.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori F32]
          Length = 676

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 103/727 (14%), Positives = 204/727 (28%), Gaps = 190/727 (26%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQKN 83
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKL 111

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-----------TLAKY 132
           + +    K +    +K   +      +   +      +   A L              + 
Sbjct: 112 LESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSHKNPEHTPYAAFYEN 171

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           +   +E  KKK+  +D+ DL++     +L++                 +L DE QDT+ +
Sbjct: 172 ILDEFENTKKKHNYIDYNDLLLLFKQAMLERP-----------SPYKEVLCDEFQDTNPL 220

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +      
Sbjct: 221 QESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN----- 263

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +  L  ++RS+ +IL + ++V    E     + +   +                 
Sbjct: 264 ---AQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGHFNK------------ 308

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +++  D++                         + IA  I                  
Sbjct: 309 PTLLNYSDNKAQ----------------------CQDIAKRI--------------VMRK 332

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             K++ V+ R       +    R     + +           +   +   + +  FI + 
Sbjct: 333 NFKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSASFFESKEVALALDICAFIFNP 388

Query: 432 EDDLSFVCMLKSPLFNFS------------------------------------------ 449
           +D ++ + +L S + +                                            
Sbjct: 389 KDIMATIHVL-SCISDIGSNTAKDIHEALMLLGNGDLKLALTHPNKEAKIYTKKKEITSM 447

Query: 450 --EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDF 503
              ++IF +         + +           K       ++     L   A   SP   
Sbjct: 448 GLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSDFFILYTKAPTHSPSAL 507

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNEQNSY--SSLQELISEL- 554
              IL      Q F +R   E     D    EF  L    R  +     SSL +    L 
Sbjct: 508 IKHILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLG 566

Query: 555 -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  I  + +     V +++VH +KGLE   V+++D     F +  +          
Sbjct: 567 RFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGG---- 622

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL YV +TRA + L +    N   E
Sbjct: 623 ------------------------------IEEERRLFYVAITRAKENLWLSYAKNELRE 652

Query: 674 KKSNQRT 680
               +  
Sbjct: 653 NAKPKEH 659


>gi|293557080|ref|ZP_06675639.1| UvrD/REP helicase [Enterococcus faecium E1039]
 gi|291600768|gb|EFF31061.1| UvrD/REP helicase [Enterococcus faecium E1039]
          Length = 728

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 93/587 (15%), Positives = 200/587 (34%), Gaps = 115/587 (19%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           E++ +   E     D+     + +     LT         +E K+   +L+F D++ N  
Sbjct: 229 EEMVQLVKEKYDSIDKNARQPISERLYGLLT-------ELQEQKRSQQLLEFNDVLQNLK 281

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
             L+  +    I++ I Q+ +++ IDE QDT+ +QWE+++ +T++         +   L 
Sbjct: 282 SALENEE----IQHYIGQKYDYLFIDEFQDTNPLQWEIVKRMTKE---------NRIKLI 328

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIY F G+EP  +   ++             + + L  ++RS A I+   +++
Sbjct: 329 VVGDDDQSIYGFRGSEPAYIKNFEKEYP---------INTLFLLTNYRSRAAIVQGANRL 379

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            S  +N            +       + G ++ +    ++ +S                 
Sbjct: 380 ISYNKN--------DRIPKAMIPAQKEAGVMEAYLFSDTKAES----------------- 414

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                    + +   I   I           +  + K+ ++L R    T  +        
Sbjct: 415 ---------QWLIKQIQTFIQ----------KNGKYKESIILYRSASQTQQLVQSLLKTN 455

Query: 398 NDYKI----SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--FNFSED 451
             + +       G        H   + ++     +  Q+ + ++  +L+  +      + 
Sbjct: 456 IPFVLEADSPYEGIFGIKSFQHFY-QKIVHWQTALNLQKKNQAYQQLLRQLMADCYLKKS 514

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
           +  +  + +++   V +YI   +    SK   + ++   L    Q    +      L   
Sbjct: 515 ECDQYFSLKYQNIAVADYILSISPNLKSKSAEIREFEEALRKTDQHQEIYSLVQSYL--- 571

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-- 569
               +          + + E +             LQ L  E +     +K    A    
Sbjct: 572 -HLPRIAKEIDQSDQEWIREEVKQHATF-----RRLQALSQETQATAKELKTRLIAYRQG 625

Query: 570 --NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + + I ++H +KGL    VFL+        +    +  ++                  
Sbjct: 626 KLDALCIQSIHKSKGLSYRNVFLIGCNEGSLPYNGATEKKVIDFNEIKAEPV-------- 677

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                         +T EE  RL YV MTRA ++L +C     ++ K
Sbjct: 678 --------------TTIEEERRLFYVAMTRARNRLYLCVPQMKNSRK 710


>gi|254293049|ref|YP_003059072.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
 gi|254041580|gb|ACT58375.1| UvrD/REP helicase [Hirschia baltica ATCC 49814]
          Length = 1134

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 124/811 (15%), Positives = 216/811 (26%), Gaps = 122/811 (15%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSM------ETGNPTILKKAQTLQQASQTQC 61
           +  E  + I +                  L +      E G PT  +    ++     + 
Sbjct: 252 AAGEMADRIARKHSSAATAMWIGTFHAFGLDIVRRFHGELGLPTDPRMMDRIEAVELLEE 311

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
              R  L     L        +I+      K   +          +  +          +
Sbjct: 312 EFPRLDLAHYRNLYDPTQIISDILQAISRAKDEVVDPA------RYADLAKEMAASATTE 365

Query: 122 --STLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                A+  L    +   YE  K     +DF DL+     LL   +    I   +  + +
Sbjct: 366 DQRVAAAKALEVARVYELYERLKANVHCVDFGDLVSMPVRLL---ESRPDICEHLRSQYD 422

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HIL+DE QD +     ++ +L              R L+AVGD KQSIY F GA    + 
Sbjct: 423 HILVDEYQDVNRSSVRLLTALC----------PDGRNLWAVGDAKQSIYRFRGASSFNMA 472

Query: 239 REK-RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           R                     L  ++RS  +I+       +             T    
Sbjct: 473 RFGVSDFP--------GGERGRLKKNYRSVEEIVDTFSDFAAA-------MIVGDTESGL 517

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            + R        L +   +                                IA  I    
Sbjct: 518 EAVRGSSGDRSTLRKVAQAPDQIVA--------------------------IAEAIQERH 551

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                           ++ +VL    +    I      L     + V+      L +   
Sbjct: 552 RDG----------CAFREQVVLCTGNEKLSEIGQSLERL----GVPVLFLG--SLFERPE 595

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ----RHETETVYEYIQKF 473
           IKDLM+L   +  +      V +     F    DD+ KI           ++  E     
Sbjct: 596 IKDLMSLLTILSDKRAMG-MVRVACIGDFEMPIDDVGKIYRHLRSSDGNPKSWLENTDLT 654

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VL 529
           A         +               P      +L  +      +S             +
Sbjct: 655 ATLSECGQMSLANLKAAFDGFDDTSEPWAVIAHLLLDRTSIAARLSISEMMAHRTQGIAI 714

Query: 530 DEFLNFTLRNEQNSY----SSLQELISELEQYPPTIKRA---HSANHNEVRIMTVHTAKG 582
            +FLNF               L  +   +        R     +   + VR+MT+H AKG
Sbjct: 715 WQFLNFLRSQPTGQGLPIKRLLDRVRRLVRLGDDRNLRQLPLAAQGIDAVRLMTIHGAKG 774

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   V L    +              P                         ++  + +
Sbjct: 775 LEFETVHLPGLNADTIPRNPPLPTCPPPDG--------------MVEGTTETALEAFRTA 820

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             EE   L +V M+RA D+L+I   +  SN  K N  ++ D +     ++      +L  
Sbjct: 821 QAEEQECLFFVAMSRARDRLLIYAPTQKSNGSKRNLSSFIDRLGSRIDHETIQPGGELPA 880

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI----PKKLFSPIKNDINEPYILN 758
           +    + +             L   E   +      +     ++  +P          + 
Sbjct: 881 APEMADVMLQVSGRVRFSGAQLSLYERCPRRFFYTHVLQVGGRRTATPFMQMHEAVRAVV 940

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
              +  K   + E+ L           IH+L
Sbjct: 941 KDVVAGKTTVSSEAELRSQVAREF--SIHEL 969


>gi|116072446|ref|ZP_01469713.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp.
            BL107]
 gi|116064968|gb|EAU70727.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp.
            BL107]
          Length = 1217

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 111/907 (12%), Positives = 232/907 (25%), Gaps = 175/907 (19%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               ++                 L +       E + +   + F  L+      +   D  
Sbjct: 332  VSALQTAIGALWDEPLERVWRYLLERGLQELRERRARRGAITFAGLL----AAMDPGDGQ 387

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                  + +    +++DE QDT  +QW +++    D             L  VGD KQ+I
Sbjct: 388  VDWLAPLQERYRAVMVDEFQDTDPVQWRLLQRTFGDRI--------NHLLLLVGDPKQAI 439

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F G +    L+ ++          Q   I  L  +FR+TA ++  ++ + +       
Sbjct: 440  YRFRGGDLGTYLKARQ----------QVDRIDHLLDNFRATASLMEGLNTLMAPGMPRSH 489

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            L           + R   +  V L          +    Q           + +    L 
Sbjct: 490  LEIP--------AVRAQAIDQVSL----------KTAALQLLELELDTPASRTALEQQLP 531

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             ++A  +  ++                 D+ VLV + +         R       I    
Sbjct: 532  HQLAALVLEILEGPDQPD--------PSDLCVLVSRHQQATD----LRRALGAAGIPSRL 579

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
              +  + +  A   +  L   +    DD     ++ SPL N+S +               
Sbjct: 580  VTQGDVLESEAALVVQRLLDALADPGDDRCLRLLVSSPLMNWSLE--------------- 624

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
                   A         + + +                  +L     R   +S  G  + 
Sbjct: 625  -------AMENEGALDQLAEQLRLWERALPKLGLMGCLAQLLE--GQRTADLSERGRMLG 675

Query: 527  D--VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-----SANHNEVRIMTVHT 579
            D   +   +   +  +    ++    +     +P T              + V ++TVH 
Sbjct: 676  DLQQVGRLVQEAMHRQGLDSATAANWLRRERLHPTTPVPEARQPHSDQADHAVAVVTVHR 735

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            +KGLE PVV         +     +   +     D              +          
Sbjct: 736  SKGLEYPVVICPYL----WQAPRQESGPLWRETGDGRWFIAIDSHWGKGHRAAQQAADDA 791

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                +    RL YV MTRA  QL++     ++ ++ +    W         + ++    +
Sbjct: 792  MAEAE----RLAYVAMTRARSQLMVVWVR-STGQEGAPLPCWLFGADAIDDSVDQFSDDR 846

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM------DEQKIPKKLFSPIKNDINE 753
            L  ++++            P            +          +       +     I+ 
Sbjct: 847  LDLALSERGVSLLRRVLPDPLLPSQRWRSLPSEQPLGLGETPGRIDRSWGRASYSAWISA 906

Query: 754  PYILNPSTIDTKGKTNLES--------------LLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            P                E               L    +    G  +H++ + I      
Sbjct: 907  PVDPVVHEQGRDPDPGAEECSLTGSDLWPEQGPLADFPRGAVAGDCLHRIFEQIPFHAAE 966

Query: 800  KRKN--FITSYCTKNAKLWPAKEYKNL-------------LLSITRL-----LENPMMTT 839
                     S      +     E +               L  + +      LE   ++ 
Sbjct: 967  ADDQCPLDHSKLDGLREAVIDAELRRAGLDCNLQSMVMEGLDYVLKTPLGGPLEQLQLSQ 1026

Query: 840  AMSCDSYSEVSVSGKI----------------NCPKKDIII--------------SGRID 869
                    E+S    +                N       I              +G ID
Sbjct: 1027 LGLKQRIHELSFDLPVGHVSTKDLVQAFRRSPNARFGGRYIDHLATLGVNSRGFLTGSID 1086

Query: 870  QISISQQ--NIFIFEYKTH----HHVPQEIEHIPYTHIAQLSIYEKILKD--SYPNKSLV 921
             +         ++ ++K++                 H  Q       +++   + +  L 
Sbjct: 1087 LVFCDPHQSRWWVLDWKSNWIGERRSEGSPGRCGPRHYHQ-----DAMQEQMIHHHYPLQ 1141

Query: 922  CLLIYVS 928
              L  V+
Sbjct: 1142 AHLYLVA 1148


>gi|50083734|ref|YP_045244.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ADP1]
 gi|49529710|emb|CAG67422.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ADP1]
          Length = 672

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 83/578 (14%), Positives = 188/578 (32%), Gaps = 130/578 (22%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLI- 153
           D+    + +Q +           ++ ++    + +A+ L   YE+ K++   LD++D++ 
Sbjct: 157 DVYSYARNTQSKLSDAL----IKQLPEALEHKVQIAE-LMQSYEQRKQERHFLDYDDILA 211

Query: 154 INTNDLLKKRDVSAWIRYKIDQEI-NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           I   +L    ++  W+           +L+DE+QDT+ +QW +++ L E           
Sbjct: 212 IVAVNLQNSPELVQWV-----TRFCKVMLVDEMQDTNPLQWGILQPLIE----------- 255

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
              LF VGD+ QSIY F GA+ + +   K               ++ L  ++RST +IL 
Sbjct: 256 HVGLFCVGDDAQSIYGFRGADFENIHHFKERIPN--------AEVLTLEENYRSTQEILD 307

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
           + + + +           +      +                                  
Sbjct: 308 ISNWLLAHSPIEYHKQLKAHRGQGLKP--------------------------------- 334

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
              L    +    A  IA  +                     + ++LVR       +   
Sbjct: 335 --QLNIFQNEFEEANWIAQDLLARHQQG----------AHWHEHMILVRSGFSARYLEGA 382

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                    I         L +   +KD++++ R +++ +DD++++  L +      +  
Sbjct: 383 L----ISCNIPYRFIGGVKLLESAHVKDVLSMLRVVINPQDDIAWMRFL-TLWNGVGDVG 437

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHV-----IKYIHELIHIAQFCSPHDFFTLI 507
             K+  +  +   +    ++         + +     +  + + +  +   +       +
Sbjct: 438 ASKLAHELIQLPDIDARCERLERHDKVDPKAILILKQLDVLQQHVEASIGLALDALAEQL 497

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                      +    +    + +F +   +  +   +  + L   + +     +   S 
Sbjct: 498 ---------EQNYKTQDWSRRVKDF-DLVKQLGRKHVALSEFLEEYVLEPVSISEIERSG 547

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           + + V I+T+H+AKG E  V ++                                     
Sbjct: 548 DQDLVTIITIHSAKGAEQKVCYVP----------------------------------HV 573

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             N              EE  R+LYV +TRA ++LII 
Sbjct: 574 SPNAYPHARAQGDFDEVEEERRVLYVALTRAENELIIT 611


>gi|300814173|ref|ZP_07094456.1| UvrD/REP helicase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511830|gb|EFK39047.1| UvrD/REP helicase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 613

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 92/555 (16%), Positives = 181/555 (32%), Gaps = 110/555 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   YE  KK+N  +DF+D++  T  +LK     A+ + K     + I +DE QDTS 
Sbjct: 162 QKIFLSYENYKKENHYIDFDDMLTLTYKILKDD---AYFKNKYRSYFDFIQLDEGQDTSY 218

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+ +++ L +              +F V D+ QSIY F GA+P  +L+           
Sbjct: 219 VQFLILKLLAK----------PKDNIFIVADDDQSIYGFRGAKPDELLKLNETY------ 262

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +   I  +  +FRS+ +I+ + +      +N                           
Sbjct: 263 --KDLKIYYMEENFRSSKNIVNISNLFIGQNQNRFKK----------------------- 297

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + + +D +   +     +  D              I   +  + G+           
Sbjct: 298 --AICTNNDWKNPVELIKLKNSLDQY----------EFIRDKLPKLQGS----------- 334

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R       +         D+ I    +++     H  +KD++ +  F   
Sbjct: 335 -----CAILYRNNLSAIGLVEFLERNNIDFNIK---DNKNKFFSHFIVKDIIDIINFSND 386

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQKFANCGISKFQHVIKYIH 489
             +   +           S+  I  +  +  +                +     +     
Sbjct: 387 LSNLALYQKFYYKLEGYISKRHIAYLKNKVTDNIFKELMAYPNLPPYYLKNISKLASDFK 446

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L ++    +   F    +G  K  ++   R G  +  + +     +L  E      + E
Sbjct: 447 ILKNMKLSKAIS-FIQYEMGYNKYLEENAKRLGENMNSISEYLFYISLIGENA--KDIDE 503

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            I  L+     +K+ + +N N + + T+H++KGLE   VF++D        K    +   
Sbjct: 504 FIGRLKHLQFLLKKPNDSNIN-LFLSTIHSSKGLEFTNVFMIDLIDGNIPSKSAIDILPD 562

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
            +L                                EE  RL YV MTR  + L +     
Sbjct: 563 DTLG------------------------------LEEERRLFYVAMTRTKENLFLIYPYY 592

Query: 670 TSNEKKSNQRTWYDM 684
            +N K    R   ++
Sbjct: 593 RNNIKNEMSRFLIEL 607


>gi|294614527|ref|ZP_06694438.1| ATP-dependent DNA helicase [Enterococcus faecium E1636]
 gi|291592610|gb|EFF24208.1| ATP-dependent DNA helicase [Enterococcus faecium E1636]
          Length = 527

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 91/585 (15%), Positives = 197/585 (33%), Gaps = 112/585 (19%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +++      +  D  +       +     L   L    +E K+   +L+F D++ N    
Sbjct: 27  VEEMVQLVKEKYDSIDKNARQPISERLYGLLMEL----QEQKRSQKLLEFNDVLQNLKSA 82

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L+  +    I++ I Q+ +++ IDE QDT+ +QWE+++ +T++         +   L  V
Sbjct: 83  LENEE----IQHYIGQKYDYLFIDEFQDTNPLQWEIVKRMTKE---------NRIKLIVV 129

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIY F G+EP  +   ++               + L  ++RS A I+   +++ S
Sbjct: 130 GDDDQSIYGFRGSEPAYIKNFEKEYPT---------KTLFLLTNYRSRAAIVQGANRLIS 180

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             +N            +       + G ++ +    ++ +S                   
Sbjct: 181 YNKN--------DRIPKAMIPAQKEAGVMEAYLFSDTKAES------------------- 213

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                  + +   I   I           +  + K+ ++L R    T  +          
Sbjct: 214 -------QWLIKQIQTFIQ----------KNGKYKESIILYRSASQTQQLVQSLLKTNIP 256

Query: 400 YKI----SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--FNFSEDDI 453
           + +       G        H   + ++     +  Q+ + ++  +L+  +      + + 
Sbjct: 257 FVLEADSPYEGIFGIKSFQHFY-QKIVHWQTALNLQKKNQAYQQLLRQLMADCYLKKSEC 315

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
            +  + +++   V +YI   +    SK   + ++   L    Q    +      L     
Sbjct: 316 DQYFSPKYQNIAVADYILSISPNLKSKSAEIREFEEALRKTDQHQEIYSLVQSYL----H 371

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH---- 569
             +          + + E +             LQ L  E +     +K    A      
Sbjct: 372 LPRIAKEIDQSDQEWIREEVKQHATF-----RRLQALSQETQATAKELKTRLIAYRQGKL 426

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + + I ++H +KGL    VFL+        +    +  ++                    
Sbjct: 427 DALCIQSIHKSKGLSYRNVFLIGCNEGSLPYNGATEKKVIDFNEIKAEPV---------- 476

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                       +T EE  RL YV MTRA ++L +C     ++ K
Sbjct: 477 ------------TTIEEERRLFYVAMTRARNRLYLCVPQMKNSRK 509


>gi|308183064|ref|YP_003927191.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori PeCan4]
 gi|308065249|gb|ADO07141.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori PeCan4]
          Length = 676

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 108/696 (15%), Positives = 206/696 (29%), Gaps = 128/696 (18%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQKN 83
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKL 111

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-----------TLAKY 132
           + +    K +    +K   +      +   +      +   A L              + 
Sbjct: 112 LESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKSPEHAPYAAFYEN 171

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           +   +E  KKK+  +D+ DL++     +L++                 +L DE QDT+ +
Sbjct: 172 ILDEFENTKKKHNYIDYNDLLLLFKQAMLERP-----------SPYKEVLCDEFQDTNPL 220

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +      
Sbjct: 221 QESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN----- 263

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +  L  ++RS+ +IL + ++V    E                  + G      L 
Sbjct: 264 ---AQVFTLTKNYRSSKEILDLANQVIQHNER--------IYPKNLEVVKSGHFNKPTLL 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM----IGTDTIFSNGK 367
               +    Q   ++      F  +      +  A ++   + +         +      
Sbjct: 313 NYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFES 372

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           K V  A DI  L+   K       +   +     IS +G++          KD+      
Sbjct: 373 KEVALALDICTLIFNPK------DIMAAIHVLSHISDIGSN--------TAKDIHEALML 418

Query: 428 ILSQEDDLS-----FVCMLKSPLFNFS----EDDIFKICTQRHETETVYEYIQKFANCGI 478
           + + +  L+         + +     +     ++IF +         + +          
Sbjct: 419 LGNGDLKLALTHPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMH 478

Query: 479 SKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD---- 530
            K       ++     L   A   SP      IL      Q F +R   E     D    
Sbjct: 479 PKISLNGAKMLSDFFILYTKAPTHSPSALIKHILE-SAFFQTFKTRLLKERSKNKDGSYN 537

Query: 531 EF--LNFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
           EF  L    R  +     SSL +    L        I    +     V +++VH +KGLE
Sbjct: 538 EFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGEGVNLLSVHASKGLE 597

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V+++D     F +  +                                         
Sbjct: 598 FKDVYIIDLMEGRFPNHKLMNTGGG----------------------------------I 623

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
           EE  RL YV +TRA + L +    N   E    +  
Sbjct: 624 EEERRLFYVAITRAKENLWLSYAKNELRENAKPKEH 659


>gi|33593011|ref|NP_880655.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
 gi|33563386|emb|CAE42260.1| probable ATP-dependent DNA helicase [Bordetella pertussis Tohama I]
          Length = 697

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 87/605 (14%), Positives = 175/605 (28%), Gaps = 118/605 (19%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A     K L   Y  AK++  VLD++DL++   ++++   ++A +        +HIL+D
Sbjct: 193 EAWEAELKRLFQAYVLAKQEQNVLDYDDLLLYWAEMMRDAGLAADV----GARFDHILVD 248

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ +Q  ++ ++                L  VGD+ QSIYSF  A  + +L   + 
Sbjct: 249 EYQDTNRLQAAILLAM----------KPDGGGLTVVGDDAQSIYSFRAASVRNILDFPQQ 298

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        ++ L  ++RST  IL   + V  +       +  +      R     
Sbjct: 299 FP-------GGAKVVTLERNYRSTQPILDASNAVIGLAAERYAKALWTDRASSQRP---- 347

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                                           L   S  +  AR +A  +          
Sbjct: 348 -------------------------------ELVSVSDEAGQARWVADQVLAQREGGATL 376

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                     K    L R    +  +            I  V        +   +KD+++
Sbjct: 377 ----------KSQAALFRASSHSAALELEL----TRRNIPFVKFGGLRFLEAAHVKDMLS 422

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK--F 481
           + R+  +    L+   + +            K+     +       +++F     ++  +
Sbjct: 423 VLRWAENPRSRLAGFRVAQLVP-GIGPATAGKLMDAMAQAADPLAAMREFQPGAAARQQW 481

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              +     L    +           L     + + I          L++          
Sbjct: 482 SEFVATYATLREARRPWPAD--VDAALQWYGPQLERIFDDARVRRADLEQLARLA----- 534

Query: 542 NSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             Y + +  ++EL   PP      S     + + + + T+H+AKG E   V++++     
Sbjct: 535 GGYPTRERFLTELTLDPPDATSDESGPPLRDEDYMILSTIHSAKGQEWKSVYILNAVDGC 594

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                                                          EE  RLLYV MTR
Sbjct: 595 MPSDMATGT----------------------------------AEEIEEERRLLYVAMTR 620

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A ++L +         +++     +     +    E +  +        +          
Sbjct: 621 ARERLQVVVPQRFYVHQQAGLGDRHVYGSRTRFISEAMLPLFEHLPKPPELPFDRARPIE 680

Query: 718 HPENT 722
                
Sbjct: 681 PAAPR 685


>gi|219559252|ref|ZP_03538328.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
          Length = 693

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 90/684 (13%), Positives = 187/684 (27%), Gaps = 116/684 (16%)

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            ++     VLVR+  D   I    R       I         L     + +++A+ R + 
Sbjct: 13  GVKPPTAAVLVRRNADAAAIADTLRA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVA 68

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-----------------------QRHETETV 466
                 + + +L  P +     D+  +                            +   +
Sbjct: 69  DPTAGAAAMRVLTGPRWRLGARDLAALWRRALTLSGESPSTASPESIAMAASADADNPCL 128

Query: 467 YEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            + I        ++  G  +   +   +  L       S  D    +        +  + 
Sbjct: 129 ADAISDPGSAEGYSVAGYGRIGALAGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRAS 187

Query: 521 ----FGNEVIDVLDEFLNFTLRNE-----QNSYSSLQELISELEQYPPTIKR----AHSA 567
                G    + LD F +           ++S +S+  L++ L+              + 
Sbjct: 188 APVSGGWAGPEHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTV 247

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + V+++TVH AKGLE  VV +      VF     +   +       P +      + +
Sbjct: 248 ACDRVQVLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGA 307

Query: 628 RNNIVSDLIKHLKKSTQEEYN----------------RLLYVGMTRASDQLIICKHSNTS 671
               V D      +    +                  RLLYV +TRA D L++  H    
Sbjct: 308 HGIPVLDTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGP 367

Query: 672 NEKKSNQRT------------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
              K    +                     +V          ++  L ++  +  W A  
Sbjct: 368 TGTKPRGPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADP 427

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN-------DINEPYILNPSTIDTKG 766
            +    +              D       +  P +        D++              
Sbjct: 428 LAARRGDVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAP 487

Query: 767 KTNLE---------SLLSDNQTFNRGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKL 815
              L           L+ D     +     +L+  +   P+      +   ++  +    
Sbjct: 488 ARGLPNHLSVSSLVELVGDPVGARQ-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGA 542

Query: 816 WPAKEYKNLLLSITRLLENPM----MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRI 868
               +  +L  +  R + +P     +  A +  S++     +V      P  D ++ GRI
Sbjct: 543 ELLFDLGDLPGAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRI 602

Query: 869 DQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLI 925
           D + +       + ++KT                 QL++Y          P  S+     
Sbjct: 603 DAVFVDPDGGATVVDWKTGKPPHGPAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFY 660

Query: 926 YVSEPKVFIIPQNKLNKAFAEIST 949
           YV      +  +       A + T
Sbjct: 661 YVRSGITVVPDELPAPGELAMLLT 684


>gi|308063741|gb|ADO05628.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori Sat464]
          Length = 676

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 102/727 (14%), Positives = 200/727 (27%), Gaps = 190/727 (26%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQKN 83
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKL 111

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-----------TLAKY 132
           + +    K +    +K   +      +   +      +   A L              + 
Sbjct: 112 LESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAAFYEN 171

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           +   +E  KKK+  +D+ DL++     +L++                 +L DE QDT+ +
Sbjct: 172 ILDEFENTKKKHNYIDYNDLLLLFKQAMLERP-----------SPYKEVLCDEFQDTNPL 220

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +      
Sbjct: 221 QESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN----- 263

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +  L  ++RS+ +IL + ++V    E     + +   +                 
Sbjct: 264 ---AQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGHFN------------- 307

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                       P   ++                 + IA  I                  
Sbjct: 308 -----------KPALLNYNDNI----------AQCQDIAKRI--------------VMRK 332

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             K++ V+ R       +    R     + +           +   +   + +   I + 
Sbjct: 333 NFKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSASFFESKEVALALDICALIFNP 388

Query: 432 EDDLSFVCMLKSPLFNFS------------------------------------------ 449
           +D ++ + +L S + +                                            
Sbjct: 389 KDIMAAIHVL-SHISDIGSNTAKDIHEALMLLGNGDLKLALTHPNKEAKIYTKKKEITSM 447

Query: 450 --EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDF 503
              ++IF +         + +           K       ++     L   A   SP   
Sbjct: 448 GLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSDFFILYTKAPTHSPSAL 507

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNEQNSY--SSLQELISEL- 554
              IL      Q F +R   E     D    EF  L    R  +     SSL +    L 
Sbjct: 508 IKHILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLG 566

Query: 555 -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  I  + +     V +++VH +KGLE   V+++D     F +  +          
Sbjct: 567 RFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGG---- 622

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL YV +TRA + L +    N   E
Sbjct: 623 ------------------------------IEEERRLFYVAITRAKENLWLSYAKNELRE 652

Query: 674 KKSNQRT 680
               +  
Sbjct: 653 NAKPKEH 659


>gi|108563318|ref|YP_627634.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori HPAG1]
 gi|107837091|gb|ABF84960.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori HPAG1]
          Length = 675

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 99/683 (14%), Positives = 191/683 (27%), Gaps = 188/683 (27%)

Query: 67  SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +  L Q    +K      +      + K P   + L      +     + +     
Sbjct: 95  EHYPNLSLKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWL 154

Query: 121 ----KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQ 175
                       L + +   +E  KKK+  +D+ DL++     +L++             
Sbjct: 155 SNKNPEHAPYAALYENILEEFENTKKKHNYIDYNDLLLLFKQAMLERP-----------S 203

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
               +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+  
Sbjct: 204 PYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADIS 251

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +    +  +           +  L  ++RS+ +IL + ++V    E     + +   + 
Sbjct: 252 IISNFTQKYKN--------AQVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKSG 303

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
           +                           P   ++              +  + IA  I  
Sbjct: 304 KFN------------------------KPALLNYNDNI----------VQCQDIAKRIVM 329

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                             K++ V+ R       +    R     Y +           + 
Sbjct: 330 RKD--------------FKEVAVIFRNNASADQLEAALRS----YNVPSKRKGSASFFES 371

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS-------------------------- 449
             +   + +   + + +D ++ + +L S + +                            
Sbjct: 372 KEVALALDICALLFNPKDIMAAIHVL-SYISDIGSNTAKDIHEALMLLGNGDLKLALTHP 430

Query: 450 ------------------EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKY 487
                              ++IF +         + +           K        +  
Sbjct: 431 NKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKTLSD 490

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNEQ 541
              L   A   SP      IL      Q F +R   E     D    EF  L    R  +
Sbjct: 491 FFILYTKAPTHSPSALIKHILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNE 549

Query: 542 NSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                SSL +    L        I  + +     V +++VH +KGLE   V+++D     
Sbjct: 550 KMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGCGVNLLSVHASKGLEFKDVYIIDLMEGR 609

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F +  +                                         EE  RL YV +TR
Sbjct: 610 FPNHKLMNTGGG----------------------------------IEEERRLFYVAITR 635

Query: 658 ASDQLIICKHSNTSNEKKSNQRT 680
           A + L +    N   E    +  
Sbjct: 636 AKENLWLSYAKNELRENAKPKEH 658


>gi|262385344|gb|ACY64665.1| SRS2 [Arabidopsis thaliana]
          Length = 1147

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 95/578 (16%), Positives = 173/578 (29%), Gaps = 138/578 (23%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +  +Y +  K    LD+ DLI  +  LL        +  +       I++DE QD
Sbjct: 431 EIGAKILGNYNDILKACDALDYHDLISCSVTLLSDFPE---VFKECQDTWKAIIVDEFQD 487

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS +Q++++R L            S   +  VGD+ QSI+ F+GA+       +R     
Sbjct: 488 TSTMQYKLLRML-----------GSHNHITIVGDDDQSIFGFNGADSSGFDSFRRDFPNY 536

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RS+  I+     +                              
Sbjct: 537 --------KEVRLIKNYRSSRHIVEAASSIIKNNTKR----------------------- 565

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                Q  S         + +     +             + AY I  +I    I ++G 
Sbjct: 566 ----CQSKSISSENSQGSKITVKECHNEEA----------QCAYVIDKIIE---ITNDGS 608

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI +L R++    +     R  K  + +               ++ ++A+ + 
Sbjct: 609 TPCCSHGDIAILYRRQVSGKVFQNAFRQRKIPFNVH-----GVAFYRKKVVQVILAMLKT 663

Query: 428 ILSQEDDLSFVCMLKSPL------FNFSEDDIFKICTQRH----------ETETVYEYIQ 471
             S+ DD S+  + K+ L           + I KI T R               +    +
Sbjct: 664 TFSECDDASYRRVFKALLPFEKEEKKRIIEHIEKISTSRKCSFISAASDIFNAKISGTFK 723

Query: 472 KFANCGISKFQHVIKYIHEL--IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV- 528
           +       K    +  + +L     +          +I       Q+ +       +   
Sbjct: 724 RSQLTQGRKVLQTLDMVAKLVDREQSLSAVVTCVANMIPQKYLLEQRAVVDNDGGKLLNE 783

Query: 529 -------LDEFLNFTLRN---------------EQNSYSSLQELISELEQYPPTIKR-AH 565
                  L   ++                    E+   + L   I+ + +      R   
Sbjct: 784 DNDLRSVLQYLMDDVAEFISTHCTTTEEEDAIKEKKGCNQLHSFINYISERETENFRSRR 843

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             N N V + T+H +KGLE  +VF+V          H    +   S              
Sbjct: 844 RDNENSVTLTTIHQSKGLEWDIVFIVKANENEIPLLHESNGNASESG------------- 890

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                           ++ EE  RLLYV MTRA  +L 
Sbjct: 891 ----------------TSLEEERRLLYVAMTRARKKLF 912


>gi|240256061|ref|NP_194242.6| ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase
           [Arabidopsis thaliana]
          Length = 1149

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 95/578 (16%), Positives = 173/578 (29%), Gaps = 138/578 (23%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +  +Y +  K    LD+ DLI  +  LL        +  +       I++DE QD
Sbjct: 431 EIGAKILGNYNDILKACDALDYHDLISCSVTLLSDFPE---VFKECQDTWKAIIVDEFQD 487

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS +Q++++R L            S   +  VGD+ QSI+ F+GA+       +R     
Sbjct: 488 TSTMQYKLLRML-----------GSHNHITIVGDDDQSIFGFNGADSSGFDSFRRDFPNY 536

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  ++RS+  I+     +                              
Sbjct: 537 --------KEVRLIKNYRSSRHIVEAASSIIKNNTKR----------------------- 565

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                Q  S         + +     +             + AY I  +I    I ++G 
Sbjct: 566 ----CQSKSISSENSQGSKITVKECHNEEA----------QCAYVIDKIIE---ITNDGS 608

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI +L R++    +     R  K  + +               ++ ++A+ + 
Sbjct: 609 TPCCSHGDIAILYRRQVSGKVFQNAFRQRKIPFNVH-----GVAFYRKKVVQVILAMLKT 663

Query: 428 ILSQEDDLSFVCMLKSPL------FNFSEDDIFKICTQRH----------ETETVYEYIQ 471
             S+ DD S+  + K+ L           + I KI T R               +    +
Sbjct: 664 TFSECDDASYRRVFKALLPFEKEEKKRIIEHIEKISTSRKCSFISAASDIFNAKISGTFK 723

Query: 472 KFANCGISKFQHVIKYIHEL--IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV- 528
           +       K    +  + +L     +          +I       Q+ +       +   
Sbjct: 724 RSQLTQGRKVLQTLDMVAKLVDREQSLSAVVTCVANMIPQKYLLEQRAVVDNDGGKLLNE 783

Query: 529 -------LDEFLNFTLRN---------------EQNSYSSLQELISELEQYPPTIKR-AH 565
                  L   ++                    E+   + L   I+ + +      R   
Sbjct: 784 DNDLRSVLQYLMDDVAEFISTHCTTTEEEDAIKEKKGCNQLHSFINYISERETENFRSRR 843

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             N N V + T+H +KGLE  +VF+V          H    +   S              
Sbjct: 844 RDNENSVTLTTIHQSKGLEWDIVFIVKANENEIPLLHESNGNASESG------------- 890

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                           ++ EE  RLLYV MTRA  +L 
Sbjct: 891 ----------------TSLEEERRLLYVAMTRARKKLF 912


>gi|188527736|ref|YP_001910423.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori Shi470]
 gi|188143976|gb|ACD48393.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori Shi470]
          Length = 676

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 104/693 (15%), Positives = 215/693 (31%), Gaps = 122/693 (17%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQKN 83
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKL 111

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-----------TLAKY 132
           + +    K +    +K   +      +   +      +   A L              + 
Sbjct: 112 LESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAAFYEN 171

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           +   +E  KKK+  +D+ DL++     +L++                 +L DE QDT+ +
Sbjct: 172 ILDEFENTKKKHNYIDYNDLLLLFKQAMLERP-----------SPYKEVLCDEFQDTNPL 220

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +      
Sbjct: 221 QESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN----- 263

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH-RSSRIGQVGTVQL 310
                +  L  ++RS+ +IL + ++V    E     + +   +    + + +     +  
Sbjct: 264 ---AQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGHFNKPALLNYNDNIAQ 320

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            + +  +   + + ++ +     ++   +  A++ +  +           +      K V
Sbjct: 321 CQDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRSHNVPSK-----RKGSASFFESKEV 375

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
             A DI  L+   K       +   +     IS +G++          KD+      + +
Sbjct: 376 ALALDICALIFNPK------DIMAAIHVLSHISDIGSN--------TAKDIHEALMLLGN 421

Query: 431 QEDDLS-----FVCMLKSPLFNFS----EDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            +  L+         + +     +     ++IF +         + +           K 
Sbjct: 422 GDLKLALTHPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKI 481

Query: 482 ----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF- 532
                 ++     L   A   SP      IL      Q F +R   E     D    EF 
Sbjct: 482 SLNGAKMLSDFFILYTKAPTHSPSALIKHILE-SVFFQTFKTRLLKERSKNKDGSYNEFK 540

Query: 533 -LNFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L    R  +     SSL +    L        I  + +     V +++VH +KGLE   
Sbjct: 541 KLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKD 600

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V+++D     F +  +                                         EE 
Sbjct: 601 VYIIDLMEGRFPNHKLMNTGGG----------------------------------IEEE 626

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
            RL YV +TRA + L +    N   E    +  
Sbjct: 627 RRLFYVAITRAKENLWLSYAKNELRENAKPKEH 659


>gi|309778890|ref|ZP_07673660.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp.
           5_7_47FAA]
 gi|308922237|gb|EFP67864.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp.
           5_7_47FAA]
          Length = 716

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 70/474 (14%), Positives = 147/474 (31%), Gaps = 74/474 (15%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            + L   Y EAK+   VLD++DL++  + +    +++A I        +HIL+DE QDT+
Sbjct: 215 LRTLFDAYVEAKQAQHVLDYDDLLLYWHAMSSDTELAAEI----GARFDHILVDEYQDTN 270

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++R+L              R +  VGD+ QSIY+F  A  + +L   R   +   
Sbjct: 271 RLQSSILRAL----------RPDGRGVTVVGDDAQSIYAFRAATVRNILDFPRHFSR--- 317

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   + L  ++RST  IL   + V          +  +     HR           
Sbjct: 318 ----PAHTVLLERNYRSTQPILDASNGVMRFATERFAKTLWTDRASTHRP---------- 363

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                     L      +  AR +A  + +              
Sbjct: 364 -------------------------RLISVRDEAEQARCVAEQVLHHREGG--------- 389

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +  K   VL R    +  +            I  V        +   +KD++++ R+  
Sbjct: 390 -LTLKSQAVLFRTASHSAPLEIEL----TRRNIPFVKYGGLKFLEAAHVKDVLSVLRWAE 444

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK--FQHVIKY 487
           +  + ++   +++  L         ++     E       +  +         +  ++  
Sbjct: 445 NPRNRIAGFRVIQ-LLPGAGPATAARVLDAMAEAADPIAALLAYEPPARLAGDWSTLMAL 503

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +  L               +        + +          LD+               L
Sbjct: 504 MQTLRVPKDSLEWAGELEAVGAWYSPHMERLHDDAAVRQGDLDQLARMAATYATRE-RFL 562

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            E+  +  +           + + + + T+H++KG E   V++++         
Sbjct: 563 TEMTLDPPELTSDESGDPYRDEDYLILSTIHSSKGQEWKAVYVLNAVDGCMPAD 616


>gi|225551821|ref|ZP_03772764.1| exodeoxyribonuclease V, beta subunit [Borrelia sp. SV1]
 gi|225371616|gb|EEH01043.1| exodeoxyribonuclease V, beta subunit [Borrelia sp. SV1]
          Length = 1169

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 145/856 (16%), Positives = 275/856 (32%), Gaps = 121/856 (14%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTENEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R++ +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRRKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQH 483
            + +  ++   +   +L S + N   +    +  Q      E   E I            +
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWNLQRILIKQDKIHLIEEFIENIIVLLEKNEITLIN 636

Query: 484  VIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
             I  I    +  I IA                  +   I     E +   +  L    + 
Sbjct: 637  AINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIISKI 696

Query: 539  -NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL++
Sbjct: 697  YHKEQNIQSLISTLENLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLSMNIVFLLN 756

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T     S+   KK        D      +          + +  K+ +     E   + Y
Sbjct: 757  TTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNIFY 808

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA   L I         K ++  +    +   F  D+      +   I +  +   
Sbjct: 809  VGATRAKFALFII--------KINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFNKK 860

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLF----SPIKNDINEPYILNPSTIDTKGKT 768
            +++T+   NT L   + I + M +++               +  E Y       + + + 
Sbjct: 861  KYNTNV--NTKLIPPKPIIKNMFKKEYTSSFSSLTAQAHHKEFYENYDFKNINYEKETEL 918

Query: 769  NLESLLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPA 818
            + E  L +   +  + G I+H  ++ I                   I     K       
Sbjct: 919  DYEPGLEETLPKGKDIGNILHAAMEKIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNT 978

Query: 819  KEYK-NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP------------- 858
             E + +L   I  +L       N  +      +   E+    KIN               
Sbjct: 979  IEIQNSLAKMIYNILTYNIRAINTRLCDI--EELQKEMEFLIKINPEFQKQKYLFDKHFE 1036

Query: 859  -----KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQL 904
                   D  + G +D I  +   I+I +YKT++    + ++             +  Q 
Sbjct: 1037 DLHIKLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQY 1096

Query: 905  SIYEKILKDS-YPNKS 919
             IY   +K   + NK 
Sbjct: 1097 KIYALGIKKILFKNKK 1112


>gi|260577891|ref|ZP_05845822.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734]
 gi|258603985|gb|EEW17231.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734]
          Length = 1136

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 109/1024 (10%), Positives = 273/1024 (26%), Gaps = 133/1024 (12%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            + + ++           Y  V  +       + TG    ++  + L+     +     + 
Sbjct: 127  AASGTFVRSVHSWAFAFYRSVQTLRGQKQPRLITGAEHDMQIREILRG--TEEDGNRYWP 184

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                  L+                 +  L++ L ++ +    +  +       +      
Sbjct: 185  TNVVPALSYAGF-------------AQQLRDLLLRATER--GLSAQQLQQLGVEHDRPMW 229

Query: 128  TLAKYLNAHYEE--AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              A      Y++     ++  L+  +L+  T    +K +    +  +  +++  +L+D+ 
Sbjct: 230  EAAGRFQQEYQQVQRLSRSESLNASELLHATLAAFEKPEGEQLV-EQQREKVKLLLVDDA 288

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
             +       +I S                     GD  Q ++ F GA+   +    +   
Sbjct: 289  HNLDPASARLIESFM----------VPGTRTLIAGDPDQCVFHFRGADEAFLDSYSQD-- 336

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP---ENAQGLSEDSTTTIRHRSSRI 302
                        + L  S+R T      V+ +        +   L    +       S  
Sbjct: 337  --------PDHRVVLSASYRLTPPAAQSVNALRRHLGAQPSRVELRSADSGDFTSGGSTG 388

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-T 361
             +   V +     ++     +  + +      +    +        IA     ++     
Sbjct: 389  AETVQVTITPTETAERLKIVDVVRRAHIEQQVAWDDIAVIVRGTGSIARVRRTLMAYGVP 448

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            +  +    V+  + +  ++    +    T     + +  + SV G D  ++        L
Sbjct: 449  VKVDPTSVVLAEQPLARMLLLAAEASYRTLTVAEMHSVLEGSVGGADPVMVRRVHRAVAL 508

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK- 480
                  +  Q    +    L++            +    +                  K 
Sbjct: 509  AIRSAQMAGQVAGQAAGQTLRAHEDGRPFQAADYVTELLNHPGDPANQWITSHCGPREKE 568

Query: 481  -FQHVIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQFISR------FGNEVIDVLDE- 531
              Q V   +       +     +     I  A K      ++       G +    LD  
Sbjct: 569  VIQRVSTVLEAGRQAWKNNQGTEMVLWKIWQATKLDMHLRAQALKGGSLGAQADADLDAV 628

Query: 532  --FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLESP 586
                +      E+N ++ ++  +  L                   V I+  H A G +  
Sbjct: 629  MSLFDILGDFAERNPHAQMESFVENLRAQKVPTGGRDQRGVRAGAVEILPAHAAAGRQWK 688

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VV +       +                     + +       ++    I        EE
Sbjct: 689  VVAIAGVQEGEWPTGPTVG------GLFGQLELVDLLDRGIDPSVPVARINDA----IEE 738

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK--------- 697
              RL  + ++RA+D + +    N+ +E     R   +M  +        +          
Sbjct: 739  ERRLFLLALSRATDSVHVTCVRNSGDEALVPSRFIAEMGVEPTELATADEAEGAEEAETS 798

Query: 698  -----------------------IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                                    +L +++       +E          + R        
Sbjct: 799  VGRKVSGSGAGALPRVLAIDSLLAELRDAVTDPNRPGHERRAAARNLAKMARAGVYGAAP 858

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-------QTFNRGLIIH 787
            ++     +  +  +    +   L+PS +++     L + L  N       +    G+ IH
Sbjct: 859  EDWWGTAEPSTDARVLAGDKIRLSPSKLESWNTCALRAFLDSNGGVSESTEAMRVGIFIH 918

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
             + + I    E             +    PA +    +      +       A   D   
Sbjct: 919  AIAEQIVQGMELDEAQLAVREILPHVLDGPAWKNTQTVERWEGGVNKLHGFIAGYRDKEF 978

Query: 848  EVSVSGKINCPKK------DIIISGRIDQISIS-QQNIF-IFEYKTHHHVPQEIEHIPYT 899
            E+     +           ++ +SGR D ++ + +  +  + ++KT       +      
Sbjct: 979  ELETERTLRARVGQTPDGVEVTLSGRADLLATNPEDGLTKVIDFKTGKTA---VTKNAAA 1035

Query: 900  HIAQLSIYEKIL---------KDSYPNKSLVCLLIY--VSEPKVFIIPQNKL-NKAFAEI 947
               QLS Y+ +L            Y  +     L+Y       +    Q +L  +  + +
Sbjct: 1036 ESPQLSAYQFLLPLNERSGGSAQKY--RPGGAALVYPGTQTKTITERNQAELTEEQLSGV 1093

Query: 948  STKI 951
              ++
Sbjct: 1094 HDQL 1097


>gi|118576323|ref|YP_876066.1| superfamily I helicase [Cenarchaeum symbiosum A]
 gi|118194844|gb|ABK77762.1| superfamily I helicase [Cenarchaeum symbiosum A]
          Length = 916

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 111/851 (13%), Positives = 237/851 (27%), Gaps = 192/851 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
               +Y    +     DF  ++     +L+    +     +++  + H++ DE QD + I
Sbjct: 147 RCYRNYAGKLEDEKFFDFSSVVHMLLGVLENDAGATD---RLNSMVEHVVFDEYQDVNHI 203

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q +++  L++              +  VGD+ Q+I+++ G+  + +        K     
Sbjct: 204 QEDLLSVLSKVSDS----------VCVVGDDDQNIFNWRGSNFRHIREFDAKYDKY---- 249

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +++ L  ++RST  I+     +                       R      V   
Sbjct: 250 --GMTVLPLNTNYRSTGHIIKAAASLIQNNLGRLEKDMRPFEGQNL---RYDGGDIVHGH 304

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
            +   +                               I  T+ ++ GTD     G K  +
Sbjct: 305 FETDLEEFG---------------------------YIEKTMKSLFGTDFTDKFGGKYAL 337

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL-TDHLAIKDLMALGRFILS 430
              D+ VLVR  KD   IT         + I V  +       +   +K  +    +  +
Sbjct: 338 SYADMAVLVRTNKDASRITKYLEE----HGIPVAADSSASGAFETPVVKLALDCLFYAFN 393

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                     L   L                  E + +  ++FA    S  + V   + +
Sbjct: 394 CPGMDGEDAPLAEDLC-------------ARYKEIIGKEPRQFAEGLGSIHRRVGNMLAK 440

Query: 491 LIH-IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE-------QN 542
                       +FF  IL A       + +  ++    L          E         
Sbjct: 441 TPSGYLPDMGLQEFFQRILNAMGLESGLLKKHLHD----LGVLSTAISDYEYVYQTIRAW 496

Query: 543 SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                +  + E+  +  P       +  + VR+MT+  AKGLE P VF+       F   
Sbjct: 497 DVPGFRYFVKEVGRRVYPDRIYNSVSPVDAVRVMTIWKAKGLEFPAVFVP--TFVKFRKI 554

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            ++   + P   D                             +E   R+ Y  +TR+   
Sbjct: 555 PLRSNFLDPGEFDKGLY----------------------TGDKESARRVYYTAVTRSQKY 592

Query: 662 LIICKHSNTS---NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
           L +   +       +K S  +  +  + +   +      +                    
Sbjct: 593 LFLTGATWQEIAVGKKPSKGKRKHPFISEMGGHLSEPSDM-------------------- 632

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
                               +  K     +   +   + +   + T G+   +    +  
Sbjct: 633 --------------------VRAKSSHGPREPEDGVLVASYRELSTYGRCPHDFFFENVA 672

Query: 779 TFNRGLI--------IHKLL----QVIFTLPEHKRKNFITSYCTKNAKLWPAKE------ 820
            F RG++        +H +L    +      +      + +   +   L  A        
Sbjct: 673 GFKRGILPASGYVTSMHNILGIIHEKYARSGKIPDPGELEAIIDETFHLRFAPLPMLNGM 732

Query: 821 YKNLLLSITRLLE--NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI---SQ 875
            K  +  I R L+     +   +         V  +        +++G ID + I     
Sbjct: 733 KKKAVGRIRRYLDKHADEIQGILE--------VEKRFEVGMDKTLVTGVIDLLRIHEGDD 784

Query: 876 QNIFIFEYKT----HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
               + ++ T     ++     E + +        Y   L+     K    ++ Y+   +
Sbjct: 785 GRAEVADFITEGERGYYESDHHERVKFG------TYA-ALQTL-GLKPGRSIIHYLDRDE 836

Query: 932 --VFIIPQNKL 940
                I   +L
Sbjct: 837 KDYVDISDEEL 847


>gi|308062228|gb|ADO04116.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori Cuz20]
          Length = 676

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 108/696 (15%), Positives = 207/696 (29%), Gaps = 128/696 (18%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQKN 83
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKL 111

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-----------TLAKY 132
           + +    K +    +K   +      +   +      +   A L              + 
Sbjct: 112 LESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAAFYEN 171

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           +   +E  KKK+  +D+ DL++     +L++                 +L DE QDT+ +
Sbjct: 172 ILDEFENTKKKHNYIDYNDLLLLFKQAMLERP-----------SPYKEVLCDEFQDTNPL 220

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +      
Sbjct: 221 QESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN----- 263

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +  L  ++RS+ +IL + ++V    E                  + G      L 
Sbjct: 264 ---AQVFTLTKNYRSSKEILDLANQVIQHNER--------IYPKNLEVVKSGHFNKPTLL 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM----IGTDTIFSNGK 367
               +    Q   ++      F  +      +  A ++   + +         +      
Sbjct: 313 NYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFES 372

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           K V  A DI  L+   K       +   +     IS +G++          KD+      
Sbjct: 373 KEVALALDICALIFNPK------DIMAAIHVLSHISDIGSN--------TAKDIHEALML 418

Query: 428 ILSQEDDLS-----FVCMLKSPLFNFS----EDDIFKICTQRHETETVYEYIQKFANCGI 478
           + + +  L+         + +     +     ++IF +         + +          
Sbjct: 419 LGNGDLKLALTHPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMH 478

Query: 479 SKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD---- 530
            K       ++     L   A   SP      IL      Q F +R   E     D    
Sbjct: 479 PKISLNGAKMLSDFFILYTKAPTHSPSALIKHILE-SVFFQTFKTRLLKERSKNKDGSYN 537

Query: 531 EF--LNFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
           EF  L    R  +     SSL +    L        I  + +     V +++VH +KGLE
Sbjct: 538 EFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLE 597

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V+++D     F +  +                                         
Sbjct: 598 FKDVYIIDLMEGRFPNHKLMNTGGG----------------------------------I 623

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
           EE  RL YV +TRA + L +    N   E    +  
Sbjct: 624 EEERRLFYVAITRAKENLWLSYAKNELRENAKPKEH 659


>gi|284929239|ref|YP_003421761.1| superfamily I DNA/RNA helicase [cyanobacterium UCYN-A]
 gi|284809683|gb|ADB95380.1| DNA/RNA helicase, superfamily I [cyanobacterium UCYN-A]
          Length = 785

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 101/596 (16%), Positives = 199/596 (33%), Gaps = 63/596 (10%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +++ +   + ++D             +L LA  L   Y+   K +  +D++D+I    ++
Sbjct: 196 IREIKSSGLTLKDFEKINDRKHDNYQTLLLAVSLYKQYKTVMKSSNFIDYDDMIHEAINI 255

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L   D    IR    Q++  +  DE QD+S +Q ++I +L  D     N  +    L  V
Sbjct: 256 LDDSD----IRQVWQQKVFAVFEDEAQDSSPLQEKLISTLASD----HNNPTFEVNLVKV 307

Query: 220 GDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD--- 275
           GD  Q+I S F  A+P                  +  +++++  + RS  DI+   +   
Sbjct: 308 GDPNQAINSTFTAADPIYFNWFC-------EACKKDKTLVKMNQAGRSNIDIINAANFSL 360

Query: 276 -----KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
                +      N +    +  T  ++    + ++  V   +  V+ +    NP  E   
Sbjct: 361 KWMRDEWIKKQTNLKNSFSEQQTLEKNIPFHVQEIKLVDKNDPQVNANPQSSNPGLEI-- 418

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                         + + I ++I  +I    I    K R    + I +LVR+   +  + 
Sbjct: 419 -------------HIPQDIYHSIK-LIRQKIITILRKNRN---QSIAILVRENTQSHFLA 461

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              +     YKIS+    +      +  KD++ L +F+            LK  +     
Sbjct: 462 QNLKDFPEKYKISIYEVGKQNQFSQIP-KDILTLLKFMDRPHSLSYLKNSLK--ILEKQN 518

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             I +   +       + Y     +           Y   L+        +     +   
Sbjct: 519 LIIKQDWNKIIMNPEDFLYSTSLLSEPEKSVIQARNYCRSLLKAKLELPSYYLIAFLGTI 578

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP--TIKRAHSAN 568
            K     ++        + DE           +   + + I +LEQ+             
Sbjct: 579 LKYESMELASVQKLSDTIYDELNGTIT---LKNIIDVLKKIIDLEQFEEITEDNEQPYVR 635

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQV------------FSHKHIKKMHIMPSLNDDP 616
            N+V IMT+H +KGL+   VFL      +            F             +    
Sbjct: 636 PNQVTIMTMHKSKGLDWNYVFLPFLHEDILSGEIKISATSKFLGNFSLAEIARTQIRALS 695

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                  ++    N +  + +  K   + E  RL+YV +TRA + L +       +
Sbjct: 696 HEKYLSYENNICTNEIKQVWEQSKLLKKAEEYRLIYVAITRAKNLLWMSAAQKGPS 751


>gi|317012720|gb|ADU83328.1| Rep helicase [Helicobacter pylori Lithuania75]
          Length = 675

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 100/683 (14%), Positives = 194/683 (28%), Gaps = 188/683 (27%)

Query: 67  SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIR--DRFNTYK 118
               +  L Q    +K      +      + K P   + L      +      + F+ + 
Sbjct: 95  EHYPNLSLKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWL 154

Query: 119 MFKSTLAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQ 175
             K+        L + +   +E  KKK+  +D+ DL++     +L++             
Sbjct: 155 SSKNPEHMPYAALYENILEEFENTKKKHNYIDYNDLLLLFKKAMLERP-----------S 203

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
               +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+  
Sbjct: 204 PYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADIS 251

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +    +  +           +  L  ++RS+ +IL + ++V    E     + +   + 
Sbjct: 252 IISNFTQKYKN--------AQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSG 303

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
           +                           P   ++                 + IA  I  
Sbjct: 304 KFN------------------------KPTLLNYNDNI----------AQCQDIAKRI-- 327

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                             K++ V+ R       +    R     + +           + 
Sbjct: 328 ------------VMRKNFKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSASFFES 371

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS-------------------------- 449
             +   + +   + + +D ++ + +L S + +                            
Sbjct: 372 KEVALALDICALLFNPKDIMAAIHIL-SYISDIGSNTAKDIHEALMLLGNGDLKSALIQP 430

Query: 450 ------------------EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKY 487
                              ++IF +         + +           K       ++  
Sbjct: 431 NKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVMDKAFHSHPVLMHPKISLNGAKMLSD 490

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNEQ 541
              L   A   SP      IL      Q F +R   E     D    EF  L    R  +
Sbjct: 491 FFILYTKAPTHSPSALIKHILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNE 549

Query: 542 NSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                SSL +    L        I    +     V +++VH +KGLE   V+++D     
Sbjct: 550 KMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGCGVNLLSVHASKGLEFKDVYIIDLMEGR 609

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F +  +                                         EE  RL YV +TR
Sbjct: 610 FPNHKLMNTGGG----------------------------------IEEERRLFYVAITR 635

Query: 658 ASDQLIICKHSNTSNEKKSNQRT 680
           A + L +    N   E    +  
Sbjct: 636 AKENLWLSYAKNELRENAKPKEH 658


>gi|227485083|ref|ZP_03915399.1| DNA helicase II [Anaerococcus lactolyticus ATCC 51172]
 gi|227236916|gb|EEI86931.1| DNA helicase II [Anaerococcus lactolyticus ATCC 51172]
          Length = 598

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 91/556 (16%), Positives = 173/556 (31%), Gaps = 119/556 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   YE  KK N  +DF+D+ I    LL++      +   I Q+  +  +DE QDTSL
Sbjct: 155 EKVYQTYENFKKINNYIDFDDMQILALKLLEENP---RLLKSIHQKYEYFQLDEGQDTSL 211

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+++++ +           +       V D+ QSIYSF  A+P+ +L       +    
Sbjct: 212 LQFKILKEIV----------NLNNNFMVVADDDQSIYSFRAADPEYLLNFTAYYPR---- 257

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 II +  + RS+ +I T+        +                            
Sbjct: 258 ----AEIIIMNENHRSSKNISTLAGNFIKENKFRYEKE---------------------- 291

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              ++S+ D       ++    +D                  I   I  D          
Sbjct: 292 ---IISKKDMGDKIIIKTLHDSYDQ--------------YNFIRKNIDNDKTN------- 327

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R       +         D+ I    +D         I D+  + +F   
Sbjct: 328 ------AILFRNNISAINLVSFLLEDGIDFSI---NDDFLDFFKSQIIDDIFDIIKFSED 378

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             +  +F  +         + +I K+ T+    +    +         +    + K +  
Sbjct: 379 FNNVSAFENIYYKIKTFIKKTEIEKLNTKPLNQDVFDFFYNFIDYDRKNSLYDIEKKLKH 438

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQ--FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
           L ++          + I      ++     +    E +   D F+   +   Q    +++
Sbjct: 439 LRNL----PLSRKISYIYKYMGYKEYASLKANKFAEEVINKDLFIESLINFTQ-DLETIE 493

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +   ++      IK     N + + + T+H +KGLE   VF+VD     F          
Sbjct: 494 DFDKKVLSLKKKIKMI---NKSSIILQTIHRSKGLEYDKVFVVDLNKNEFP--------- 541

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                       +       EE  R+ YV MTRA D L I    
Sbjct: 542 ------------------------IIDYEKDPIKNLEEERRVFYVAMTRARDNLYILATK 577

Query: 669 NTSNEKKSNQRTWYDM 684
             +N+K      +  +
Sbjct: 578 KRNNKKALPSEFFTRI 593


>gi|257094702|ref|YP_003168343.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257047226|gb|ACV36414.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 704

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 95/671 (14%), Positives = 185/671 (27%), Gaps = 142/671 (21%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + + +        W   +  +        L  E      L  A T+     +  +     
Sbjct: 103 AADRTPAGTPALAWSGTFHGIG-----ARLLREYAGRIGLDPAFTIHDRQDSGDLMNLVR 157

Query: 68  LLSSFFLTQKFTPQKNIITQ---EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
                    +  P K         +      L E L+ +     +               
Sbjct: 158 HGLGLSAKSRRFPLKATCVAIYSAVVNTRASLGEVLQSAFPWCSEWEADLR--------- 208

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                   L   Y E K+   VLD++DL++    ++    +   I     +  +H+L+DE
Sbjct: 209 -------RLFFEYVETKQAQRVLDYDDLLLYWAQMVSDPALGREI----GERFSHVLVDE 257

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+ +Q  ++ ++              R L  VGD+ QSIY+F GA  + +L      
Sbjct: 258 YQDTNRLQAAILLAM----------KPDGRGLTVVGDDAQSIYAFRGATVRNILDFPAHF 307

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                       ++ L  ++RST DIL   ++V ++                        
Sbjct: 308 -------DPPAQLVTLDRNYRSTQDILAAANQVIALASERFTK----------------- 343

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                LW    S    +    ++                  A  +   +     +     
Sbjct: 344 ----DLWSDRASTGKPRLIAVRDDADQ--------------ALHVVEQVLARRESG---- 381

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 I+ K   VL R  + +  +            I  V        +   +KD++AL
Sbjct: 382 ------IRLKAQAVLFRTAQHSVRLELEL----TRRNIPFVKFGGLKFLEAAHVKDVLAL 431

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQ 482
            R+  +  D L+    ++            ++                Q       + + 
Sbjct: 432 LRWAQNPRDRLAGFRAMQLVA-GIGPKTAGRVLDNIASASPGCTLLAEQPVPESATAGWL 490

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                +               F  I    + +   +          +++     +     
Sbjct: 491 EFAAVVAA--SEPAATPWPATFDRICAWYQTQMDRLHDDAEVRQADVEQLARIAVTY--- 545

Query: 543 SYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              S +  ++EL   PP      +     + + + + T+H+AKG E   V +++      
Sbjct: 546 --PSAERFLTELTLDPPEATSDQAGPPLLDEDYLILSTIHSAKGQEWTAVSVLNVVDGCI 603

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                      +  EE  RLLYV MTRA
Sbjct: 604 PSDMATGSL----------------------------------AEIEEERRLLYVAMTRA 629

Query: 659 SDQLIICKHSN 669
            + L +     
Sbjct: 630 KEHLDLIVPQR 640


>gi|33600795|ref|NP_888355.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50]
 gi|33568395|emb|CAE32307.1| probable ATP-dependent DNA helicase [Bordetella bronchiseptica
           RB50]
          Length = 697

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 92/607 (15%), Positives = 183/607 (30%), Gaps = 122/607 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            K L   Y  AK++  VLD++DL++   ++++   ++A +        +HIL+DE QDT+
Sbjct: 199 LKRLFQAYVLAKQEQNVLDYDDLLLYWAEMMRDAGLAADV----GARFDHILVDEYQDTN 254

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++ ++                L  VGD+ QSIYSF  A  + +L   +       
Sbjct: 255 RLQAAILLAM----------KPDGGGLTVVGDDAQSIYSFRAASVRNILDFPQQFP---- 300

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RST  IL   + V  +       +  +      R           
Sbjct: 301 ---GGAKVVTLERNYRSTQPILDASNAVIGLAAERYAKALWTDRASSQRP---------- 347

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                     L   S  +  AR +A  +                
Sbjct: 348 -------------------------ELVSVSDEAGQARWVADQVLAQREGGATL------ 376

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               K    L R    +  +            I  V        +   +KD++++ R+  
Sbjct: 377 ----KSQAALFRASSHSAALELEL----TRRNIPFVKFGGLRFLEAAHVKDMLSVLRWAE 428

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK--FQHVIKY 487
           +    L+   + +            K+     +       +++F     ++  +   +  
Sbjct: 429 NPRSRLAGFRVAQLVP-GIGPATAGKLMDAMAQAADPLAAMREFQPGAAARQQWSEFVAT 487

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
              L   A+   P D    +       ++          D L++            Y + 
Sbjct: 488 YATLRE-ARRPWPADVDAALQWYGPQLERIFDDARVRRTD-LEQLARLA-----GGYPTR 540

Query: 548 QELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           +  ++EL   PP      S     + + + + T+H+AKG E   V++++           
Sbjct: 541 ERFLTELTLDPPDATSDESGPPLRDEDYMILSTIHSAKGQEWKSVYILNAVDGCMPSDMA 600

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                    EE  RLLYV MTRA ++L 
Sbjct: 601 TGT----------------------------------AEEIEEERRLLYVAMTRARERLQ 626

Query: 664 ICKHSNTSNEKKSNQRTWY----DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +         +++     +       + S       + +     +  D   A E +    
Sbjct: 627 VVVPQRFYVHQQTGLGDRHVYGSRTRFISEAMLPLFEHLPKPPELPFDRARAIEPAAPRI 686

Query: 720 ENTPLER 726
           +     R
Sbjct: 687 DVASRVR 693


>gi|224531711|ref|ZP_03672343.1| exodeoxyribonuclease V, beta subunit [Borrelia valaisiana VS116]
 gi|224511176|gb|EEF81582.1| exodeoxyribonuclease V, beta subunit [Borrelia valaisiana VS116]
          Length = 1169

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 135/844 (15%), Positives = 253/844 (29%), Gaps = 108/844 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIKKELEKIIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SL Q E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLTQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L  + RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIILKTNHRSSKKLIEPLNKIFNNIYNNAIADEIEKIEFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       +S  +E      A     TI  ++   TI  N
Sbjct: 476  NNIFI----------NGQEIEGINIITTNSENEEDIYQKTA----LTIKYLLTYGTIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             + R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NEIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEQFLKTKEFSEIFYIL 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQH 483
            + +  +++  +   +L S + N   +    +  Q      E   E I            +
Sbjct: 577  KCLDRKQNFKTLNYILNSKILNVPWNLQRILIKQDKIHLIEEFIENITVLLEKNEITLIN 636

Query: 484  VIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
             I  I    +  I IA                  +   I     + +   +  L    + 
Sbjct: 637  AINKITSEKNLWIKIANSTKDQKIIEWAKNKINYKGLLIKEGKLDNLKTYETTLEIISKI 696

Query: 539  -NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +++ +  SL   +  L      +         + +   + +MT+H +KGL   +VFL++
Sbjct: 697  YHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDDESIELMTIHKSKGLSMNIVFLIN 756

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T      +   KK H      D      +          + +  K+ +     E   + Y
Sbjct: 757  TSPIENGNIFSKKNHFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNIFY 808

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA   L I      S   K  +      +    H+    + I       K      
Sbjct: 809  VGATRAKFALFI--AKTNSITSKLLEIAKIFTIDGIKHDFNIYEFISQKRFNKKKNNTNV 866

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                  P+       +            +        + +          D    + LE 
Sbjct: 867  NAKLIPPKPIIKNMFKKEYTSSFSSLTAQAHHQTFYENYDFKNTNYEKETDLDFDSTLEE 926

Query: 773  LLSDNQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYK-N 823
            +L   +  + G I+H  ++ I                   I     K        E + +
Sbjct: 927  VL--PKGKDSGNILHAAMEEIIFSTAKDTFDNFKKNNIEIIKKQIQKINSNLNTIEIQNS 984

Query: 824  LLLSITRLLE------NPMMTTAMSCDSYSEVSVSG------------------KINCPK 859
            L   I  +L       N  +      +   E+                       ++   
Sbjct: 985  LTKMIYNILTYNIKAINTRLCDI--EELQKEMEFLIKINPKFQKQKHLFDSHFEDLHIKL 1042

Query: 860  KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEKI 910
             D  + G +D I  +   I+I +YKT++    + ++             +  Q  IY   
Sbjct: 1043 NDGYLKGIVDLIFKANNKIYILDYKTNYLGKDKDDYNITNLKNIIKKEYYDLQYKIYALG 1102

Query: 911  LKDS 914
            +K  
Sbjct: 1103 IKKI 1106


>gi|297380108|gb|ADI34995.1| ATP-dependent DNA helicase pcrA [Helicobacter pylori v225d]
          Length = 675

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 102/726 (14%), Positives = 197/726 (27%), Gaps = 189/726 (26%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQK- 82
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKL 111

Query: 83  -----NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA-- 135
                +      + K P   + L      +     + +      +     T         
Sbjct: 112 LESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAAFYENI 171

Query: 136 --HYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              +E  KKK+  +D+ DL++     +L++                 +L DE QDT+ +Q
Sbjct: 172 LDEFENTKKKHNYIDYNDLLLLFKQAMLERP-----------SPYKEVLCDEFQDTNPLQ 220

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ +++            P +LF VGD  QSIY+F+GA+   +    +  +       
Sbjct: 221 ESILDAIS------------PPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN------ 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +  L  ++RS+ +IL + ++V    E     + +   +                  
Sbjct: 263 --AQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGHFN-------------- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                      P   ++                 + IA  I                   
Sbjct: 307 ----------KPALLNYNDNI----------AQCQDIAKRIVMRKD-------------- 332

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K++ V+ R       +    R     + +           +   +   + +   I + +
Sbjct: 333 FKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSTSFFESKEVALALDICALIFNPK 388

Query: 433 DDLSFVCMLKSPLFNFS------------------------------------------- 449
           D ++ + +L S + +                                             
Sbjct: 389 DIMAAIHVL-SHISDIGSNTAKDIHEALMLLGNGDLKLALTHPNKEAKIYTKKKEITSMG 447

Query: 450 -EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFF 504
             ++IF +         + +           K       ++     L   A   SP    
Sbjct: 448 LFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSDFFILYTKAPTHSPSVLI 507

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNEQNSY--SSLQELISEL-- 554
             IL      Q F +R   E     D    EF  L    R  +     SSL +    L  
Sbjct: 508 KHILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGR 566

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 I  + +     V +++VH +KGLE   V+++D     F +  +           
Sbjct: 567 FLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGG----- 621

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                         EE  RL YV +TRA + L +    N   E 
Sbjct: 622 -----------------------------IEEERRLFYVAITRAKENLWLSYAKNELREN 652

Query: 675 KSNQRT 680
              +  
Sbjct: 653 AKPKEH 658


>gi|257899979|ref|ZP_05679632.1| UvrD/REP helicase [Enterococcus faecium Com15]
 gi|257837891|gb|EEV62965.1| UvrD/REP helicase [Enterococcus faecium Com15]
          Length = 728

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 93/584 (15%), Positives = 186/584 (31%), Gaps = 110/584 (18%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +++      +  D  +       +     L   L    +E K++  +L+F D++ N    
Sbjct: 228 IEEMIQLVKEKYDSIDKNARQPISERLYGLLTEL----QEQKRRQQLLEFNDVLQNLKSA 283

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L+  +    I+  I Q+ +++ IDE QDT+ +QWE+++ +T++         +   L  V
Sbjct: 284 LENDE----IQRYIGQKYDYLFIDEFQDTNPLQWEIVKRMTKE---------NGIKLIVV 330

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIY F G+EP  +   ++               + L  ++RS A I+   +++ S
Sbjct: 331 GDDDQSIYGFRGSEPAYIKNFEKEYPT---------KTLFLLTNYRSRAAIVQGANRLIS 381

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             +N            +       + G ++ +    ++ +S                   
Sbjct: 382 YNKN--------DRIPKAMIPAQKEAGIMEAYLFSDTKAES------------------- 414

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                  + +   I + I           +  + K+ ++L R    T             
Sbjct: 415 -------QWLISQIQSFIQ----------KNGKYKESIILYRSASQT----QQLVQSLLK 453

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQ---EDDLSFVCMLKSPLFNFSEDDIFKI 456
             I  V            IK      + I+     ++        +  L     D   K 
Sbjct: 454 TNIPFVLEADSPYEGIFGIKSFQQFYQKIVHWQTAQNPQKKHQAYQQLLRQLMVDCYLKK 513

Query: 457 CTQRHETETVYE--YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                      +   I  +        +     I +     +    H     ++ +    
Sbjct: 514 SEGDQYFSPKCQNTAITDYILSVRPNLKSKSAEIRQFEEALRKTDQHQEIYSLVQSYLHL 573

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH----N 570
            +          + + E +            S+Q L  E +     +K    A      +
Sbjct: 574 PRIAKEIDQSDQEWIREEVKQHATF-----RSIQALSQETQATAKELKTRLIAYRQGKLD 628

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + I ++H +KGL    VFL+        +    +  ++ S                   
Sbjct: 629 ALCIQSIHKSKGLSYRNVFLIGCNEGSLPYNGATEKKVIDSNE----------------- 671

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                IK    +T EE  RL YV MTRA ++L +C     +  K
Sbjct: 672 -----IKAEPATTIEEERRLFYVAMTRARNRLYLCVPQMKNTRK 710


>gi|224114652|ref|XP_002332333.1| predicted protein [Populus trichocarpa]
 gi|222832580|gb|EEE71057.1| predicted protein [Populus trichocarpa]
          Length = 1056

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 109/739 (14%), Positives = 205/739 (27%), Gaps = 168/739 (22%)

Query: 2   KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
           ++R G    ++               +S  + +      +      +K     +      
Sbjct: 235 RDRIGAVAGKAKA---------KELMISTFHSFSLQLCRSHA----EKLGRTSEFLIYGH 281

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
             +R +++ +  L +K         ++ +KK      + K S         R +      
Sbjct: 282 GHQRRAIIEAVRLLEKEKSVSLEYFKDKSKKWQKFVTQAKASGKTPADFHRRGD------ 335

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                  +   +  +Y +  +    LD+ DLI  +  LL        +          I+
Sbjct: 336 ------EIGAAILGNYNDILRSCNALDYHDLISCSVKLLTDFPE---VFEDCKDSWKAIV 386

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDTS +Q+ ++R L+               +  VGD+ QSI+SF+GAE       +
Sbjct: 387 IDEFQDTSAMQYSLLRLLSS-----------HNHITIVGDDDQSIFSFNGAEISGFDSFR 435

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                           I L  ++RST  I+     +                        
Sbjct: 436 HDFANY--------KEIRLNKNYRSTRYIVEAASSLIQNNMKRCQF-------------- 473

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                                +   ++      ++ +  +       +   I        
Sbjct: 474 --------------------KDVLTDNSCGSKIAIKECQNERAECAFVVDKILE------ 507

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             S+G         I +L R++    +     R  K  + +               +K +
Sbjct: 508 AASDGSHSKPSYGSIAILYRRQVSGKIFQLAFRERKIPFNVH-----GVAFYRKKVVKAI 562

Query: 422 MALGRFILSQEDDLSFVCMLK--------------------SPLFNFSEDDIFKICTQRH 461
           +A+ R  L   DD S+  + K                    S +   S            
Sbjct: 563 IAMLRTTLPGCDDGSYHQVFKALLPFEKEEKRRVIEHVDKISTVRKCSFIAAACDVFSAK 622

Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHE-------LIHIAQFCSPHDFFTL-------- 506
            + T            +S  Q + K +H        +  +A                   
Sbjct: 623 ISGTFKRSQLTQGRKVLSTLQMISKLVHREQSISAVITSVANMVPQKYLLEQRAVVDSDG 682

Query: 507 --ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS-------LQELISELEQY 557
              L      +  +    ++V DVL   +    +  ++           L+E I  + + 
Sbjct: 683 GKWLNEDNDLRSVLQYLLDDVSDVLS--MQVASKEGESDVQEQKGCVSLLKEFIDYITER 740

Query: 558 PPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                R     N N V + T+H +KGLE   VF+V          H              
Sbjct: 741 EKENFRSRRHNNENSVTLTTIHQSKGLEWDTVFIVKANESEIPLLHEFNGS--------- 791

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                    ++ EE  RL YV MTRA  +L I   +  SN +  
Sbjct: 792 --------------------AKENGNSIEEERRLFYVAMTRARKKLFITYVAMDSNWQML 831

Query: 677 NQRTWYDMVYDSFHNDERV 695
           +   +   + D     +  
Sbjct: 832 HPSRFLKEIPDHLREIQAE 850


>gi|27904885|ref|NP_778011.1| exodeoxyribonuclease V beta chain [Buchnera aphidicola str. Bp
            (Baizongia pistaciae)]
 gi|32129525|sp|Q89AB3|EX5B_BUCBP RecName: Full=Exodeoxyribonuclease V beta chain
 gi|27904283|gb|AAO27116.1| exodeoxyribonuclease V beta chain [Buchnera aphidicola str. Bp
            (Baizongia pistaciae)]
          Length = 1180

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 128/908 (14%), Positives = 282/908 (31%), Gaps = 152/908 (16%)

Query: 81   QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
            +K    + ++ K     +    S+    +I                +  +  + A + + 
Sbjct: 298  KKTTSEKILDDKFFKFIDTFLDSKFSLKEIF--------------IIDASLEIKAMFMQE 343

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            K KN   +++DLI    +++ K +    I   I ++    LIDE QDT+  Q+ + + + 
Sbjct: 344  KIKNRYFEYDDLITFCWNMVNKNNF--NISQTILKKYPVALIDEFQDTNNKQYNIFKKIY 401

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            +              L  + D KQ+IYSF GA+    L+ K   + +            L
Sbjct: 402  K----------KENLLILISDPKQAIYSFSGADITSYLQAKSNIKNQY----------FL 441

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              ++RS+  I+  ++ +FS  +N       +   ++          + ++ +    + + 
Sbjct: 442  DTNWRSSPKIINSINLLFSRLKNPFLTKNITFYPVK----------SSRINKTTKFEVNG 491

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGKKRVIQAKD 375
            +  P      +   ++        ++   A  IS  I +      TI  + K R +   D
Sbjct: 492  KNQPALRFLLNKNKNISINEYKEWISITTAKYISYWISSGIKGNATITISNKVRTVNFSD 551

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            I ++VR   +   I      L      S+    +  +     I +++ + + IL+   + 
Sbjct: 552  IAIIVRNNLEAKTIQLELTKLNIQ---SLYLTSKNNIFQSKEILEILWILQAILNPNIER 608

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETV-YEYIQKFANCGISKFQHVIKYIHELIHI 494
                 + + + + +  +I  I         +  E+ Q           +VI+ +    +I
Sbjct: 609  LLKRAMSTNIMSKNTKEIISIPNNHSYWIKLSQEFNQYLIFWNNYGILYVIQQLIINYNI 668

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            +   +    F+  +       + +      +       +N+  +           +  + 
Sbjct: 669  SNNNNLLHNFSPNIKNILYIGELLEEKSITIK-NKFLLINWLKK----------NITQDF 717

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                P   + +   +N ++I+++H +KGLE P+  +              +         
Sbjct: 718  YLTKPKYIKPNYEKNNYIKIVSIHKSKGLEYPITIIPFATITFNKTVSTVEKICF----- 772

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                      + +   I       ++K    E  RLLYV +TR+     I      +  +
Sbjct: 773  ----------NLNNTKIKKQKTLKIEKHKFSEDIRLLYVALTRSIIHCSIGISLAQTITQ 822

Query: 675  KSNQRTWY--------DMVYDSFHNDERVKKIKLTNSINK-----DEWIAYEWSTHHPEN 721
            K   +             +  S  N    KK+    SI K     +              
Sbjct: 823  KKKIQKEKSKFKINVLRYIIQSGKNHISTKKLYTELSILKKNKNIEIISEIPNIIKKNFQ 882

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK---------------- 765
             P     +   +  +            +       + PST+ +                 
Sbjct: 883  IPTLNTNSQSLMHYQVSRKFNYNYNFTSYSQLKKNIKPSTMYSTLNTKKLFELNVKKKHC 942

Query: 766  GKTNLESLLSDNQTFNRGLIIHK---------------LLQVIFTLPEHKRKNFITS--- 807
             +  + +  +       G ++HK               LL+ +      KR   I     
Sbjct: 943  FENKILTPHTFPSGKIYGTLLHKILKNISFHKSINSNWLLKKLSEYNLDKRWCLILKNWM 1002

Query: 808  -------YCTKNAKLWPAKEYKNLLLS------ITRLLENPMMTTAMSCDSYSEVSVSGK 854
                               + KN +        I + L    +         S  S+  K
Sbjct: 1003 YSILYKNLDKNYNLRLSKLDSKNYIKELKFLLPIKKKLTALKLNNIFQTHQCS--SLENK 1060

Query: 855  INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLS 905
            +       I+SG ID + + +   F+ +YK++        +           + +  QL 
Sbjct: 1061 LCFHPIQGILSGSIDLVFLWKTKYFLVDYKSNWIGNSNQSYSQQNIKKIIKKHHYNFQLQ 1120

Query: 906  IYEKILKD 913
            +Y  +L  
Sbjct: 1121 LYSLVLHR 1128


>gi|315586856|gb|ADU41237.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori 35A]
          Length = 676

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 101/727 (13%), Positives = 201/727 (27%), Gaps = 190/727 (26%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQKN 83
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKL 111

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-----------TLAKY 132
           + +    K +    +K   +      +   +      +   A L              + 
Sbjct: 112 LESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAAFYEN 171

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           +   +E  KKK+  +D+ DL++     +L++                 +L DE QDT+ +
Sbjct: 172 ILDEFENTKKKHNYIDYNDLLLLFKQAMLERP-----------SPYKEVLCDEFQDTNPL 220

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +      
Sbjct: 221 QESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN----- 263

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +  L  ++RS+ +IL + ++V    +     + +   +                 
Sbjct: 264 ---AQVFTLTKNYRSSKEILDLANQVIQRNKRIYPKNLEVVKSGHFN------------- 307

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                       P   ++                 + IA  I                  
Sbjct: 308 -----------KPALLNYNDNI----------AQCQDIAKRI--------------VMRK 332

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             K++ V+ R       +    R     + +           +   +  ++ +   I + 
Sbjct: 333 NFKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSASFFESKEVALVLDICALIFNP 388

Query: 432 EDDLSFVCMLKSPLFNFS------------------------------------------ 449
           +D ++ + +L S + +                                            
Sbjct: 389 KDIMAAIHVL-SHISDIGSNTAKDIHEALMLLGNGDLKLALTQPNKEAKIYTKKKEITSM 447

Query: 450 --EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDF 503
              ++IF +         + +           K       ++     L   A   SP   
Sbjct: 448 GLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSDFFILYTKAPTHSPSAL 507

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNEQNSY--SSLQELISEL- 554
              IL      Q F +R   E     D    EF  L    R  +     SSL +    L 
Sbjct: 508 IKHILE-SAFFQTFKTRLLKERSKNKDSSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLG 566

Query: 555 -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                  I  + +     V +++VH +KGLE   V+++D     F +  +          
Sbjct: 567 RFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNYKLMNTGGG---- 622

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL YV +TRA + L +    N   E
Sbjct: 623 ------------------------------IEEERRLFYVAITRAKENLWLSYAKNELRE 652

Query: 674 KKSNQRT 680
               +  
Sbjct: 653 NAKPKEH 659


>gi|195941453|ref|ZP_03086835.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi 80a]
 gi|312149352|gb|ADQ29423.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi N40]
          Length = 1169

 Score =  177 bits (448), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 141/852 (16%), Positives = 266/852 (31%), Gaps = 113/852 (13%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQH 483
            + +  ++   +   +L S + N   +    +  Q      E   E I            +
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWNLQRILIKQDKIHLIEEFIENIIVLLEKNEITLIN 636

Query: 484  VIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
             I  I    +  I IA                  +   I     E +   +  L    + 
Sbjct: 637  AINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIISKI 696

Query: 539  -NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL++
Sbjct: 697  YHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLSMNIVFLLN 756

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T     S+   KK        D      +          + +  K+ +     E   + Y
Sbjct: 757  TTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNIFY 808

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA   L I K ++ +++     + +         N       K  N    +  +  
Sbjct: 809  VGATRAKFALFIIKINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFNKKKDNTNVNT 868

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
            +     P    + ++E                     +  E Y       + + + + E 
Sbjct: 869  KLIPPKPIIKNMFKKEYTSSFSSLTA------QAHHKEFYENYDFKNINYEKETELDYEP 922

Query: 773  LLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYK 822
             L +   +  + G I+H  ++ I                   I     K        E +
Sbjct: 923  GLEETLPKGKDIGNILHAAMEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNTIEIQ 982

Query: 823  -NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP----------------- 858
             +L   I  +L       N  +      +   E+    KIN                   
Sbjct: 983  NSLAKMIYNILTYNIRAINTRLCDI--EELQKEMEFLIKINPEFQKQKYLFDKHFEDLHI 1040

Query: 859  -KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYE 908
               D  + G +D I  +   I+I +YKT++    + ++             +  Q  IY 
Sbjct: 1041 KLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQYKIYA 1100

Query: 909  KILKDS-YPNKS 919
              +K   + NK 
Sbjct: 1101 LGIKKILFKNKK 1112


>gi|119962863|ref|YP_948449.1| ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter aurescens TC1]
 gi|119949722|gb|ABM08633.1| putative ATP-dependent DNA helicase (UvrD/REP) [Arthrobacter
           aurescens TC1]
          Length = 721

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 98/793 (12%), Positives = 215/793 (27%), Gaps = 166/793 (20%)

Query: 2   KNRFGLSLN-ESYELIYK-DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           +  +G+     S + +           ++    + + ++      T    A    Q    
Sbjct: 63  RIAYGVHSGVYSPQRLLAVTFTARAAAEMRSRLRDLGVANVQ-ARTFHAAALRQLQFFWP 121

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
           Q I      L            + +          DL  +++ ++   +   +     + 
Sbjct: 122 QAIGGTLPNLLDHKANMIAEASRRLRLSTDRASIRDLAAEIEWAKVSMLTPANYLENAQD 181

Query: 120 FKSTLAS-LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +     LT    +   YE+ K    V+DFED+++ T  +L++      +   + ++  
Sbjct: 182 RGTPGGFDLTAVARVFQAYEDIKTDRNVIDFEDVLLITVGILQEDP---KVAATVREQYR 238

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           H ++DE QD S +Q  ++                   L  VGD  Q+IYSF GA PK +L
Sbjct: 239 HFVVDEYQDVSPLQQRLLDLWLG----------GRNELCVVGDASQTIYSFTGASPKHLL 288

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             K              ++++L   +RST  ++ + + +                     
Sbjct: 289 GFKAQFP--------GATVVKLIRDYRSTPQVVKLANDL-------------------LG 321

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           S R G       W   +     + +  +  +    D   +       A  +A  I  ++ 
Sbjct: 322 SRRSGGPVADAAWAPPLKLVAQRPSGPEPRFMECPDDEAE-------AAVVAGRIQELLN 374

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
           T           ++A +I +L R    +               I               +
Sbjct: 375 TG----------VKASEIAILFRTNGQSEAYEQAL----ASAGIGYQLRGGERFFARKEV 420

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           +D +   R         +   + + P     +                       A    
Sbjct: 421 RDAILQLRA--------ATRAVAEGPQEALGQI---------VRDIVASIGYTDAAPHSG 463

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
              +   + +  L+ +A   +                                       
Sbjct: 464 GALRERWESLAALVALADELAVS------------------------------------- 486

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    +L E ++EL++               V + ++H AKGLE   VFLV     + 
Sbjct: 487 --RGESFTLAEFVNELQERSVAQHAPTVQG---VTLASLHAAKGLEWDAVFLVGLSEGLM 541

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                               +         +E  RLLYVG+TRA
Sbjct: 542 P-----------------------------------ISFADTPEDVDEERRLLYVGITRA 566

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDM-------VYDSFHNDERVKKIKLTNSINKDEWIA 711
            + L +   +  +   ++N++    +       V  +    +     +   +    +   
Sbjct: 567 REHLNLSWSTARTPGGRANRKPSRFLDGLRPNSVASANARSKTGPTRRKAAAPASCKVCG 626

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
              ++          +             ++         + P  +  +          +
Sbjct: 627 SMLASGAERKVGRCNQCPPTYEEQTFDALRQWRRDEAQSADVPAYVVFTDATLTAIAEAK 686

Query: 772 SLLSDNQTFNRGL 784
               +      G+
Sbjct: 687 PSSLEELAGLAGI 699


>gi|330881401|gb|EGH15550.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 801

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 95/828 (11%), Positives = 216/828 (26%), Gaps = 139/828 (16%)

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+F GA+    LR ++                 L  ++RS+  ++  V+ VF+  E    
Sbjct: 1   YAFRGADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVASVNHVFTRAEQRPQ 51

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                       +         Q  ++ +    +               +        LA
Sbjct: 52  GRGAFLFRDDQGNQVPFSDALAQGRKETLEVDGAPLTALTVWHLESEQPVSGVIYRQQLA 111

Query: 347 RRIAYTISNMI------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
              A  I  ++             +   R ++  DI +LVR  K+   +           
Sbjct: 112 ASCASEIVRLLNAGQQGRAGFAMLDKPLRGLRPADIAILVRDGKEAQAVRQQLSA---RG 168

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
             SV  +D+  +       DL++  +     + + +    L     +    ++ ++    
Sbjct: 169 VRSVYLSDKDSVFVAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD- 227

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                  E   +        ++ V +    L  + +          ++    G +   + 
Sbjct: 228 -------ELAWEQRVMQFRGYRAVWRSQGVLPMLRRLLHDFALPQTLMTRTDGERVLTNL 280

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTV 577
                   L E L           + ++ L   L               ++   V+++T+
Sbjct: 281 L------HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTI 334

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGL+ P+VFL    S          +    +  +                    LI+
Sbjct: 335 HKSKGLQYPLVFLPFICSSKPVDGSRLPLQFHDADGNSQISLQPT----------EALIQ 384

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                   E  RLLYV +TR+     +   ++      SN       +         + +
Sbjct: 385 QADDERLAEDLRLLYVALTRSEHACWL-GVADLKRGNASNSMLHRSALGYLLGGGVLLAE 443

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIK 748
                   +D     +     P   P +   +  +             +       +   
Sbjct: 444 SAELKVWLRDLAQGCDAIALQPVPEPTDERFSAPRNEAALVKLLVPKRRAAENWWIASYS 503

Query: 749 NDI--------NEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHK 788
                       +    +P          L+                  +  N G  +H 
Sbjct: 504 ALRIGDTVTTGADESPDSPQAQKLFDDERLDPEAPRDISTSGGDIHRFPRGPNPGTFLHG 563

Query: 789 LLQV-------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP----- 835
           LL+        +        ++ +   C++           + L  +  + L        
Sbjct: 564 LLEWAGNEGFALTAHTPELLRDAVARRCSRRGWAGWIDTLSDWLQHMLNMPLRLSPDATP 623

Query: 836 -MMTTAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRI 868
             +      + Y  E+     S  +N  + D ++                       G I
Sbjct: 624 VALDELDQPNQYRIEMEFWFASNNVNVAQMDALVRRFTHNNAPRAATETVSLNGMFKGFI 683

Query: 869 DQISISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS----- 914
           D     +   ++ +YK++     +  +         +   +  Q  +Y   L        
Sbjct: 684 DLTFEHEGRYYVADYKSNWLGTDDTAYTELAMETAILDNRYDLQYVLYLLALHRQLKARM 743

Query: 915 ----YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
               Y       L +++           F+ P  +L ++   +    P
Sbjct: 744 ADYDYDQHMGGALYLFLRGSRSVSQGAYFVRPPRELIESLDLLFQGKP 791


>gi|229829221|ref|ZP_04455290.1| hypothetical protein GCWU000342_01308 [Shuttleworthia satelles DSM
           14600]
 gi|229792384|gb|EEP28498.1| hypothetical protein GCWU000342_01308 [Shuttleworthia satelles DSM
           14600]
          Length = 640

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 191/669 (28%), Gaps = 149/669 (22%)

Query: 52  TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE-FIKI 110
            + +  +    +   S    F L         +  +   +K+    ++L          I
Sbjct: 93  RILREERGYSADSLLSEEKRFLL--AMEALNQMGIRADRRKTETFLKRLDGLSQRETDPI 150

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
               +  +    T     L +     Y   K+++ VLDF D++     LL++      IR
Sbjct: 151 TGTQDLERSANETEKESDLTEQFARIYWSMKRRDKVLDFGDMLSEARILLEENPA---IR 207

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            +       IL+DE QD   +Q+ +++ L E +            LF VGD+ QSIY F 
Sbjct: 208 DRWSHRFRMILVDEAQDMDALQFSLVQILAEGW----------GNLFLVGDDDQSIYGFR 257

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA P  +L  +               I+ L  ++RST  I+    ++    +     S  
Sbjct: 258 GARPGLLLDIRSTYPNAV--------ILHLQTNYRSTRSIVKAAKRLIGHNKMRYAKSIR 309

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                        ++G + +      + +                              A
Sbjct: 310 PDR---------KEMGRIVVRRLRNPREE------------------------------A 330

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  ++              +  +  VL R R  +  +  + R       I      + 
Sbjct: 331 EQIGGLLRK------------RRGETAVLFRTRAQSTELIRVLRQE----GIPFYMRRKE 374

Query: 411 I-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
             +  H   +D+++     L        + +L  P        I        E    +  
Sbjct: 375 RKVAGHWLTQDIISYCSLALGHRRREDLLRILNRPCRQLPRSCI-------EEETFEWGE 427

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV- 528
           + +       + +  ++ +   +      SP+   T +LG    R      +  +  +  
Sbjct: 428 LGRRLKEHPGQAKQFLE-LERDMAFLASSSPYAALTYLLGKVGYRAFLEESYRGKRSEWD 486

Query: 529 -----LDEFLNFTLRNEQNSYSSLQELISELEQYPP--------------------TIKR 563
                L   +            +L+  I  LE+                        I  
Sbjct: 487 EIEMLLGILMGLARGIRGRGKEALKSYIKILEEERLLPEAGGADQYDQRRRGMGENEILA 546

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             +     V + T H +KGLE   V ++D    +      +                   
Sbjct: 547 QSNNRAPPVGLFTFHGSKGLEFDQVHIMDVNEGITPSSRARG------------------ 588

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                            +   EE  R+ YV +TRA  ++ +       N+K +  R   +
Sbjct: 589 -----------------REALEEERRMFYVALTRAKREVYLYSCLEMGNQKLAPSRFLAE 631

Query: 684 MVYDSFHND 692
           +        
Sbjct: 632 IQEKDQDEG 640


>gi|225571482|ref|ZP_03780478.1| hypothetical protein CLOHYLEM_07580 [Clostridium hylemonae DSM 15053]
 gi|225159958|gb|EEG72577.1| hypothetical protein CLOHYLEM_07580 [Clostridium hylemonae DSM 15053]
          Length = 1066

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/538 (16%), Positives = 166/538 (30%), Gaps = 129/538 (23%)

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
              YE   K+  +LDF+ L++ T  L++    +   R +      ++L+DE QD + +Q+ 
Sbjct: 626  REYERRLKERKLLDFDGLLLETLRLMEAGAAADGFRKRCA----YLLVDEFQDINPLQYR 681

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++++           +   R LF +GD  QSIY F GA+     R +             
Sbjct: 682  LMKAW----------NEGGRELFVIGDPDQSIYGFRGADAACFDRLREEYP--------D 723

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              +I L  ++RST +I+    K+                    R+ R    G V      
Sbjct: 724  LEVIRLEENYRSTPEIVAPAIKLICGNPG------------EERTLRANCEGGV------ 765

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       +    +    + +    +    R+A  I  +   +   + G+++V    
Sbjct: 766  -----------KVRLAAAGTPMGEAIFVAKEINRLAGGIGMLEAHEMDVTRGERKVRGFD 814

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            DI VL R  ++      +         I  +   R        ++  +   R++    D 
Sbjct: 815  DIAVLYRTHREA----DILETCLKKEGIPYIVAGRESYLQEDIVRGSLFFFRYLADALDT 870

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
             +    LK          +     Q   +E V+E + +                 +   +
Sbjct: 871  HAREQGLK----------LLWGLEQNPVSEEVFERMAE-----------------KYRPL 903

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                 P  F    +                  + + +     +         L + +S  
Sbjct: 904  YAKEKPQKFMEQWI----------QDIQAADNEAMKKLSGMAVCY--KDMEELSKALSLG 951

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
             +     +     +   V +MT+H +KGLE P V +                        
Sbjct: 952  VESDLKRRGDRQYSSGAVTLMTLHGSKGLEFPAVLIFGVRRGTMP--------------- 996

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                       + +EE  RL YVGMTRA ++LI+      S 
Sbjct: 997  --------------------FESERHPADKEEERRLFYVGMTRAKEELILTCSGEESE 1034


>gi|145596261|ref|YP_001160558.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145305598|gb|ABP56180.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 1144

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 117/1004 (11%), Positives = 273/1004 (27%), Gaps = 212/1004 (21%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQA--SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89
                S  + TG    L   + L                 L     T+ F           
Sbjct: 135  RGEPSPRLLTGPEQDLIIRELLDLVGEEPDADPVGWPEDLRPALRTRAFAA--------- 185

Query: 90   NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC---- 145
                  L++ L ++ +  +   +        +   A    A      Y            
Sbjct: 186  -----QLRDLLMRAAERGVGPVE--LARLGERLGRADWPAAARFLREYVAVLALRDVGNR 238

Query: 146  ---VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
                 D  +L+ +   +L        +     + + H+ +DE  DT   Q E++ ++   
Sbjct: 239  GSIAYDPAELVRSATGMLLDDPA---LLAAERRRLAHVYVDEYADTDPAQQELLATVAG- 294

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                       + L  + D   S Y+F GA+P  V+      +   T +G   + +    
Sbjct: 295  ---------GGKALVVLADPDSSTYAFRGADPGGVVTFPHRFR---TASGAPAAQVVFTT 342

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            S+R+   +L    ++                   HR +R          E          
Sbjct: 343  SYRAGPRLLAAHARLARRLRG----------PATHRRTRALPAAAAGAAEVRTF------ 386

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                                   A   A  +++ +    +        +   ++ VLVR 
Sbjct: 387  ---------------------RSAASEAAWLAHALRAAHLLD-----GVPWSEMAVLVRS 420

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE--DDLSFVCM 440
                  +  L R L      +VV  +   L    A+  L+ L R  L+ +  D+ + V +
Sbjct: 421  T--GRALPSLRRALHAAGVPTVVHGEDLPLHLQPAVAPLLLLLRCALAPDRLDEEAAVAL 478

Query: 441  LKSPLFNFSEDDIFKICT-----------QRHETETVYEYIQK------FANCGISKFQH 483
            L SPL         ++             +R   E + E ++                Q 
Sbjct: 479  LHSPLGGADPLAERRLRQGLRVMALAAGDRRPSGELIVEALRDPAELAGIDRRWAEPAQT 538

Query: 484  VIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQF--------------------ISRF 521
            V   +      A     +  +    +       + +                     +  
Sbjct: 539  VAGLLAVTRETAARPGATAEEVLWAVWRVSGLAELWSAALARTPAAAGEGEVARRRRAEA 598

Query: 522  GNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVH 578
             +  +D +    +   R  ++   + ++  +  +             +   + VR++T H
Sbjct: 599  ADRDLDAVMVLFDAAARFTDRLPGARVEVFLDHVLGQDLPADTLAPTADRGDAVRLLTAH 658

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             AKGLE  +V +      V+    ++   +           + +   +S        +  
Sbjct: 659  AAKGLEWDLVAVAGVQEGVWPDLRLRGSLL------GSERLVDVLAGRSAGEGRRVSVVG 712

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD----------- 687
               +  +E  RL +V +TRA  +L++   ++ +     +       +++           
Sbjct: 713  QTSALLDEERRLFHVAVTRARRRLMVSAVASAAVGGDDHDEQPSRFLHELGVADPPPGGG 772

Query: 688  ---------------------------SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                                              +   +   ++     +A   +     
Sbjct: 773  GGPDGDARPGEGAGSDGDAGPGEDAGSDDARTGALPLSRPPRALTLASLVAELRTAVTDP 832

Query: 721  NTPLEREE--------------TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
            + P+ R                      D   +             EP  + PS +++  
Sbjct: 833  SAPVLRRRAAAAELARLAAEGVAGAHPDDWWGLRPLSDERPLVADGEPVRVTPSGMESAL 892

Query: 767  KTNLESLLSDN-------QTFNRGLIIHKLLQVIFTLPEHKRKNFIT---------SYCT 810
            + +L  LL  +            G ++H    ++       R+  +              
Sbjct: 893  RCSLRWLLERHGGGAPASAAQGVGNLVHAA-AMLAENASSDRRALLDYVAARFDAIELAA 951

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
            +          + ++  + R L        ++     E   + +++  +  + + GR+D+
Sbjct: 952  RWMVGPEQARAEAMVDKLLRWLATNP-RRLLA----IEHEFAVRLDDSRHPVDLVGRVDR 1006

Query: 871  ISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            + +     + + + KT          +      QL  Y+  ++ 
Sbjct: 1007 LEVDSDGRLVVVDLKTGKSTAVTAADLTEH--PQLGAYQAAVEA 1048


>gi|254779514|ref|YP_003057620.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori
           B38]
 gi|254001426|emb|CAX29421.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori
           B38]
          Length = 675

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 99/683 (14%), Positives = 192/683 (28%), Gaps = 188/683 (27%)

Query: 67  SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +  L Q    +K      +      + K P   + L      +     + +     
Sbjct: 95  EHYPNLSLKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWL 154

Query: 121 ----KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQ 175
                       L + +   +E  KKK+  +D+ DL++     +L++             
Sbjct: 155 SNKNPEHAPYAALYENILEEFENTKKKHNYIDYNDLLLLFKKAMLERP-----------S 203

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
               +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+  
Sbjct: 204 PYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADIS 251

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +    +  +           +  L  ++RS+ +IL + ++V    E     + +   + 
Sbjct: 252 IISNFTQKYKN--------AQVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKSG 303

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
           +                           P   ++                 + IA  I  
Sbjct: 304 KFN------------------------KPTLLNYNDNI----------AQCQDIAKRI-- 327

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                             K++ V+ R       +    R     + +           + 
Sbjct: 328 ------------VMRKNFKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSASFFES 371

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS-------------------------- 449
             +   + +   + + +D ++ + +L S + +                            
Sbjct: 372 KEVALALDICALLFNPKDIMAAIHIL-SYISDIGSNTAKDIHEALMLLGNGDLKLALTHP 430

Query: 450 ------------------EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKY 487
                              ++IF +         + +          SK       ++  
Sbjct: 431 SKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHSKISLNGAKMLSD 490

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNEQ 541
              L   A   SP      IL      Q F +R   E     D    EF  L    R  +
Sbjct: 491 FFILYTKAPTHSPSALIKHILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNE 549

Query: 542 NSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                SSL +    L        I  + +     V +++VH +KGLE   V+++D     
Sbjct: 550 KMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGCGVNLLSVHASKGLEFKDVYIIDLMEGR 609

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F +  +                                         EE  RL YV +TR
Sbjct: 610 FPNHKLMNTGGG----------------------------------IEEERRLFYVAITR 635

Query: 658 ASDQLIICKHSNTSNEKKSNQRT 680
           A + L +    N   E    +  
Sbjct: 636 AKENLWLSYAKNELRENAKPKEH 658


>gi|317177700|dbj|BAJ55489.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori F16]
          Length = 676

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 99/684 (14%), Positives = 192/684 (28%), Gaps = 189/684 (27%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
               +  L Q    +K + +    K +    +K   +      +   +      +   A 
Sbjct: 95  EHYPNLSLKQPKELKKLLESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAW 154

Query: 127 L-----------TLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKID 174
           L              + +   +E  KKK+  +D+ DL++     +L++            
Sbjct: 155 LSHKNPEHTPYAAFYENILDEFENTKKKHNYIDYNDLLLLFKQAMLERP----------- 203

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+ 
Sbjct: 204 SPYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADI 251

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +    +  +           +  L  ++RS+ +IL + ++V    E     + +   +
Sbjct: 252 SIISNFTQKYKN--------ARVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKS 303

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                                        P   ++                 + IA  I 
Sbjct: 304 GHFN------------------------KPALLNYNDNI----------AQCQDIAKRI- 328

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                              K++ V+ R       +    R     + +           +
Sbjct: 329 -------------VMRKNFKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSASFFE 371

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS------------------------- 449
              +   + +   I + +D ++ + +L S + +                           
Sbjct: 372 SKEVALALDICALIFNPKDIMAAIHVL-SHISDIGSNTAKDIHEALMLLGNGDLKLALTH 430

Query: 450 -------------------EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIK 486
                               ++IF +         + +           K       ++ 
Sbjct: 431 PSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLG 490

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNE 540
               L   A   SP      IL      Q F +R   E     D    EF  L    R  
Sbjct: 491 DFFILYTKAPTHSPSALIKHILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFN 549

Query: 541 QNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +     SSL +    L        I  + +     V +++VH +KGLE   V+++D    
Sbjct: 550 EKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEG 609

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F +  +                                         EE  RL YV +T
Sbjct: 610 RFPNHKLMNTGGG----------------------------------IEEERRLFYVAIT 635

Query: 657 RASDQLIICKHSNTSNEKKSNQRT 680
           RA + L +    N   E    +  
Sbjct: 636 RAKENLWLSYAKNELRENAKPKEH 659


>gi|217034405|ref|ZP_03439819.1| hypothetical protein HP9810_884g10 [Helicobacter pylori 98-10]
 gi|216943136|gb|EEC22608.1| hypothetical protein HP9810_884g10 [Helicobacter pylori 98-10]
          Length = 675

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 99/683 (14%), Positives = 189/683 (27%), Gaps = 188/683 (27%)

Query: 67  SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +  L Q    +K      +      + K P   + L      +     + +     
Sbjct: 95  EHYPNLSLKQPKELKKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWL 154

Query: 121 KSTLASLTLAKYLNA----HYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQ 175
                  T            +E  KKK+  +D+ DL++     +L++             
Sbjct: 155 SHKNPEHTPYAAFYENILDEFENTKKKHNYIDYNDLLLLFKQAMLERP-----------S 203

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
               +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+  
Sbjct: 204 PYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADIS 251

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +    +  +           +  L  ++RS+ +IL + ++V    E     + +   + 
Sbjct: 252 IISNFTQKYKN--------AQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSG 303

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                                       P   +++                + IA  I  
Sbjct: 304 HFN------------------------KPALLNYSDNI----------AQCQDIAKRI-- 327

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                             K++ V+ R       +    R     + +           + 
Sbjct: 328 ------------VMRKNFKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSASFFES 371

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS-------------------------- 449
             +   + +   I + +D ++ + +L S + +                            
Sbjct: 372 KEVALALDICALIFNPKDIMAAIHVL-SHISDIGSNTAKDIHEALMLLGDGDLKLALIQP 430

Query: 450 ------------------EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKY 487
                              ++IF +         + +           K       ++  
Sbjct: 431 DKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSD 490

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNEQ 541
              L   A   SP      IL      Q F +R   E     D    EF  L    R  +
Sbjct: 491 FFILYTKAPTHSPSALIKHILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNE 549

Query: 542 NSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                SSL +    L        I  + +     V +++VH +KGLE   V+++D     
Sbjct: 550 KMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGR 609

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F +  +                                         EE  RL YV +TR
Sbjct: 610 FPNHKLMNTGGG----------------------------------IEEERRLFYVAITR 635

Query: 658 ASDQLIICKHSNTSNEKKSNQRT 680
           A + L +    N   E    +  
Sbjct: 636 AKENLWLSYAKNELRENAKPKEH 658


>gi|227810113|ref|ZP_03989026.1| predicted protein [Acidaminococcus sp. D21]
 gi|226904693|gb|EEH90611.1| predicted protein [Acidaminococcus sp. D21]
          Length = 532

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/510 (17%), Positives = 169/510 (33%), Gaps = 40/510 (7%)

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDV 528
            +  +         + K +  L+H+++  S  + F  I+         ++   G E +  
Sbjct: 8   WESLSQSIEPSHVSLWKKLTVLMHVSRLGSLPELFDAIMETLHVESLLLAMPHGREKMAN 67

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQY----PPTIKRAHSANHNEVRIMTVHTAKGLE 584
           + +  +             ++ +  L             A   +   V+IMT+H +KGLE
Sbjct: 68  VWKLRSMAASFAMQEGGGSEDFLDRLNLMRRMQARESGAALEPDAKSVQIMTIHKSKGLE 127

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            P VFL D   +    +    + +        GI I   +   +  +  +L +  +    
Sbjct: 128 FPAVFLPDQQYKSPPDR----LGLQYLPGAGLGIMIPGDEGPQKTALYEELSEDNRALEW 183

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ----------RTWYDMVYDSFHNDER 694
           EE  R LYV MTRA   L +    +   E    +            WY+ +   FH+ E 
Sbjct: 184 EEKKRQLYVAMTRAEKYLFLSAAVSEEKESVRREKRAKGRVKSRENWYESLRRIFHDGEG 243

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND---- 750
              ++    +   E +A   S    E  PLE E    + +   + P+K+           
Sbjct: 244 KDLVEWV-ELKASEILALPLSFSIQEAPPLELEAGAFEKLKAVEFPQKVILSATALGTYD 302

Query: 751 --INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                 +    S + +     + +          G  IHK+L++  T P  K K      
Sbjct: 303 LCPRRYFYQYRSHMPSLDPDVVGTGSVRIPPATLGTYIHKVLELCRTAPAEKAKE----- 357

Query: 809 CTKNAKLWPAKEYKNLLLS----ITRLLENPMMTTAMSCDSYSEVSVSGKI-NCPKKDII 863
                + +   E   L       I   L +P+          +EV     +       + 
Sbjct: 358 LALLEESYSDGEKNVLRKEGGPLIDAYLASPLYAAYGDFPQDAEVDFELPLMTVGNASVY 417

Query: 864 ISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
             G ID++       + I +YK+ H     +E     +  QL+IY    +  Y  K    
Sbjct: 418 FEGSIDKVVHLPDGTLEIIDYKSGHPPLDGMER--KAYSRQLAIYSLAAEALYHMKVSQA 475

Query: 923 LLIYVSEPKVFIIPQ-NKLNKAFAEISTKI 951
            L ++     + +   ++       + TK+
Sbjct: 476 SLHFLRNLSTWELTDRDREAAELKALLTKL 505


>gi|323359567|ref|YP_004225963.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323275938|dbj|BAJ76083.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 1064

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 108/970 (11%), Positives = 257/970 (26%), Gaps = 147/970 (15%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQV----SDINKYVSLSMETGNPTILKKAQTLQ-Q 55
           L++   L++  +             FQ+              + TG          L   
Sbjct: 95  LRDPLALAVGRATSGALARSLASFAFQLVRGAEVRRGNEPPQLLTGGDEDQIVKDLLDGD 154

Query: 56  ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
           A+       R+                   T+           +          +     
Sbjct: 155 AADESEGISRWPEWLG---------PSIRATRGFRGDLRAFLAECTNLGLSPDDL-SALA 204

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
           +    +   +  +  +    H     +     D  DL      +L        +  +   
Sbjct: 205 SQHGVEVWESLASFTRE-YRHIRRRMRGAHR-DAADLAREAVGILDDALRDRDVLGRFAA 262

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +  IL+D+ Q+ +    +++R+            +    + A GD      +F GA P+
Sbjct: 263 -LRCILVDDAQELTSGGVDLLRAC----------RTLGIGVVAFGDPDVGSGAFRGATPE 311

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
              R  R     A           L    R T +   +V  V +    A          +
Sbjct: 312 NFARLARELGDLAA----------LRRVHRGTPEQADLVRSVAARVGAAG--------VV 353

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            HR +  G   T  +   ++     +                            A  I+ 
Sbjct: 354 AHRRAPEGAASTGSVRTFLLRSPAEE----------------------------ADAIAR 385

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           ++    +        I      V+     D+  +  L   L      +        L   
Sbjct: 386 LLRERHVLD-----GIAWGQCAVIAH---DSRQVAALEAELAAREVPARSSGPGVALGAQ 437

Query: 416 LAIKDLMALGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYE---- 468
             ++DL+AL     +   + +   +   L          ++ ++ T     E        
Sbjct: 438 RPVRDLVALVELGATDPSEWTPESVTDALLGTFGGLDPIELRRLRTVLRHEEMREGGTRS 497

Query: 469 -------------YIQKFANCGISKFQHVIKYIHELIHIA-QFCSPHDFFTLILGAKKGR 514
                              +    +   + + +  L   A Q  + H+            
Sbjct: 498 AGEVLASGLRHPLEFATIDSREARRAARLGETLAALRAQAEQHATAHELLWTAWERSGLS 557

Query: 515 QQF---------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE--LISELEQYPPTIKR 563
           + +         ++   N  +D +        R  +          L + L+      + 
Sbjct: 558 RSWREASRGHGPLAEQANRDLDAIVALFQAAKRFTEREPDGEAAVFLRAILDSDVAEDRI 617

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
              A  + VR++T   A G     V +      V+ +  ++                 + 
Sbjct: 618 EQPAVVDAVRVLTPAAAAGTAFDTVIVAGVQDGVWPNTRLR---------GGLLETWRLA 668

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK------SN 677
            +    ++ +  +   +++   +  RL    ++RA ++LI+    +              
Sbjct: 669 DAVQFPDLPAAGMLDRRRAAMHDELRLFVRAISRAGERLIVTAVDDDDTGPSVLFEMLPT 728

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                 +          V + + T ++ +        +                      
Sbjct: 729 PEAASAIPEHPLSLRGLVARHRRTLTVPRVPAPDRRHAAGQLALLATAGVAGAAPEQWYG 788

Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT------FNRGLIIHKLLQ 791
                  +P+++   E   ++PS +    +  L  +++D            G IIH  L+
Sbjct: 789 VAAPSSTAPLRDLAKEDVRVSPSRLHALEECELNWVIADLGGDRSGTTAGIGTIIHAALE 848

Query: 792 VIFTLPEHKRKNFITS------YCTKNAKLWPAKEYKNLLLSITRLLE--NPMMTTAMSC 843
              +  E      +        +     +       ++L+  +   L   +      +  
Sbjct: 849 TAASASEDDLWAVVEERWGELVFDAAWRERAERTRARDLVRRLATYLRRFDDAGGRLIGA 908

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIA 902
           + + EV +    +  +   ++SG ID++ ++    + I + KT  + PQ    +      
Sbjct: 909 ERHFEVPIPVD-DAGEHGAVVSGDIDRVELTPSGRVVIVDLKTGKNEPQTDAKVADN--P 965

Query: 903 QLSIYEKILK 912
           QL+ Y+    
Sbjct: 966 QLAAYQLAFA 975


>gi|317182211|dbj|BAJ59995.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori F57]
          Length = 676

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 99/684 (14%), Positives = 192/684 (28%), Gaps = 189/684 (27%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
               +  L Q    +K + +    K +    +K   +      +   +      +   A 
Sbjct: 95  EHYPNLSLKQPKELKKLLESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAW 154

Query: 127 L-----------TLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKID 174
           L              + +   +E  KKK+  +D+ DL++     +L++            
Sbjct: 155 LSHKNPEHTPYAAFYENILDEFENTKKKHNYIDYNDLLLLFKQAMLERP----------- 203

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+ 
Sbjct: 204 SPYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADI 251

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +    +  +           +  L  ++RS+ +IL + ++V    E     + +   +
Sbjct: 252 SIISNFTQKYKN--------AQVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKS 303

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                                        P   ++                 + IA  I 
Sbjct: 304 GHFN------------------------KPVLLNYNDNI----------AQCQDIAKRI- 328

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                              K++ V+ R       +    R     + +           +
Sbjct: 329 -------------VMRKNFKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSASFFE 371

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS------------------------- 449
              +   + +   I + +D ++ + +L S + +                           
Sbjct: 372 SKEVALALDICALIFNPKDIMAAIHVL-SHISDIGSNTAKDIHEALMLLGDGDLKLALTH 430

Query: 450 -------------------EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIK 486
                               ++IF +         + +           K       ++ 
Sbjct: 431 PSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLS 490

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNE 540
               L   A   SP      IL      Q F +R   E     D    EF  L    R  
Sbjct: 491 DFFILYTKAPTHSPSALIKHILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFN 549

Query: 541 QNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +     SSL +    L        I  + +     V +++VH +KGLE   V+++D    
Sbjct: 550 EKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEG 609

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F +  +                                         EE  RL YV +T
Sbjct: 610 RFPNHKLMNTGGG----------------------------------IEEERRLFYVAIT 635

Query: 657 RASDQLIICKHSNTSNEKKSNQRT 680
           RA + L +    N   E    +  
Sbjct: 636 RAKENLWLSYAKNELRENAKPKEH 659


>gi|227518368|ref|ZP_03948417.1| possible exonuclease RexA [Enterococcus faecalis TX0104]
 gi|227074046|gb|EEI12009.1| possible exonuclease RexA [Enterococcus faecalis TX0104]
          Length = 541

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/529 (13%), Positives = 142/529 (26%), Gaps = 98/529 (18%)

Query: 503 FFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
               I               G +    L   ++     E+ ++  L + +  +E+     
Sbjct: 1   MLWTIYRETAYLDYVGGLPVGKQRQANLYALVDRAAAYEKTTFRGLFQFVRFIEKMQEKD 60

Query: 562 KRAHS----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
           K        +  N VR+MT+H +KGLE PVVF++D   +       ++     +L     
Sbjct: 61  KDLAEPVVLSEENAVRVMTIHASKGLEFPVVFVLDMTKEFNVSDLNERYIFEENLGVGIR 120

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ---------------- 661
                 +          + +   +    E  R LYV +TRA  +                
Sbjct: 121 YLQPEERVMYDTLPFLAIKQVRLRKLLSEEMRKLYVALTRAEQKLFLVGSYKDQAAMWKE 180

Query: 662 ---------LIICKHSNTSNEKKSNQRTWYDMVYDSFHN----------------DERVK 696
                    L++   +   ++          +V     +                     
Sbjct: 181 WLKVGDVETLVLPAENRLQSKSSLMNWVGMTLVRHQKADEYQQEVVVSNVPQVKKHPANF 240

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
            I+  N       I              E+ +     ++          P +        
Sbjct: 241 HIQWFNEEQLRAAIQQLQLPERQAEDLAEKAQLSADKINRGLARLSFNYPFEVATRTTSY 300

Query: 757 LNPSTIDTKGKTN-----------------------------------LESLLSDNQTFN 781
            + S I                                              +       
Sbjct: 301 QSVSEIKRVFDDPDNKEIGKIEVREDNTIQAQPLIVNRMIEGDLSKPKFLDTVQAPSAAE 360

Query: 782 RGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            G   H LLQ+I     P ++    +     +N  + PA   K  L  I    +  +   
Sbjct: 361 IGTATHYLLQLIDLSKQPSYEEVRAVQERLVENKLILPAIAEKMNLEQIVAFFDTALGKQ 420

Query: 840 AMSCD--SYSEVSVSGKINCPK----------KDIIISGRIDQISISQQNIFIFEYKTHH 887
            +        E   S  I   +           D++I G ID          +++YKT H
Sbjct: 421 LIQHHQTVRREQPFSMLIEAEELIQNYPETTQDDLLIHGIIDGYIELDNQCILYDYKTDH 480

Query: 888 HV---PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
                PQ I  I   +  Q+++Y + L+++   +     LI ++   + 
Sbjct: 481 VKGTSPQAISEIVERYRGQMNLYRRALQEATHKEVSHVYLILLNGGVII 529


>gi|224532974|ref|ZP_03673582.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi WI91-23]
 gi|224512091|gb|EEF82484.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi WI91-23]
          Length = 1169

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 145/856 (16%), Positives = 274/856 (32%), Gaps = 121/856 (14%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQH 483
            + +  ++   +   +L S + N   +    +  Q      E   E I            +
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWNLQRILIKQDKIHLIEEFIENIIVLLEKNEITLIN 636

Query: 484  VIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
             I  I    +  I IA                  +   I     E +   +  L    + 
Sbjct: 637  AINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIISKI 696

Query: 539  -NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL++
Sbjct: 697  YHKEQNIQSLISTLESLIINEESEEIEEKINNINNDNESIELMTIHKSKGLSMNIVFLLN 756

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T     S+   KK        D      +          + +  K+ +     E   + Y
Sbjct: 757  TTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNIFY 808

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA   L I         K ++  +    +   F  D+      +   I +  +   
Sbjct: 809  VGATRAKFALFII--------KINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFNKK 860

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLF----SPIKNDINEPYILNPSTIDTKGKT 768
            +++T+   NT L   + I + M +++               +  E Y       + + + 
Sbjct: 861  KYNTNV--NTKLIPPKPIIKNMFKKEYTSSFSSLTAQAHHKEFYENYDFKNINYEKETEL 918

Query: 769  NLESLLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPA 818
            + E  L +   +  + G I+H  ++ I                   I     K       
Sbjct: 919  DYEPGLEETLPKGKDIGNILHAAMEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNT 978

Query: 819  KEYK-NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP------------- 858
             E + +L   I  +L       N  +      +   E+    KIN               
Sbjct: 979  IEIQNSLAKMIYNILTYNIRAINTRLCDV--EELQKEMEFLIKINPEFQKQKYLFDKHFE 1036

Query: 859  -----KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQL 904
                   D  + G +D I  +   I+I +YKT++    + ++             +  Q 
Sbjct: 1037 DLHIKLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQY 1096

Query: 905  SIYEKILKDS-YPNKS 919
             IY   +K   + NK 
Sbjct: 1097 KIYALGIKKILFKNKK 1112


>gi|302771199|ref|XP_002969018.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii]
 gi|300163523|gb|EFJ30134.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii]
          Length = 1196

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 121/858 (14%), Positives = 251/858 (29%), Gaps = 178/858 (20%)

Query: 8    SLNESYELIYKDLW--PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            +  E  + +   +         +S  + +      +      +K     +       ++R
Sbjct: 319  AATEMMDRVAAVVGKEASKELMISTFHSFCLQLCRSHA----EKLNRTSEFLVYGASQQR 374

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             +++ +  L  + T   +    E+       +E+ KK Q    ++        + +    
Sbjct: 375  KAVIEATRLALEATESCDAQKPEV------WRERAKKWQQFVTQVVS--KIIMICRRLRI 426

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                A  +  HYE        LD+ D I     LL        +  +      ++L+DE 
Sbjct: 427  LSQAA--ILRHYERILASCNSLDYHDFIGFAVKLLTDHPD---VLAECHNIWAYVLVDEF 481

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDTS++Q++++R L           S    +  VGD+ QSI+SF+GA        +    
Sbjct: 482  QDTSVMQYKLLRLL-----------SLHGRVTVVGDDDQSIFSFNGANSLGFSTFRNDFP 530

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                        + L  ++RST  I+     V    ++                      
Sbjct: 531  NH--------KEVRLHQNYRSTGCIVEAARCVIQHNDSG--------------------- 561

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                     V + D+    +          + +  +       +   I   +   +I S+
Sbjct: 562  -----CSAKVVRTDNDFGEKIV--------VMECRNEEAQCAFVVDEI---LEKASIASD 605

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K          +L R++    +     R  K  + +  V   R  +     +KD++AL 
Sbjct: 606  IKPVFAN---FAILYRRQVTGKIFQSAFRSRKIPFNMHGVAVYRKKV-----VKDVIALL 657

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI----CTQRHETETVYEY------------ 469
               L +   +    + K+       +    +       ++E  +  E             
Sbjct: 658  WTSLGRSGTVFERRVFKALYGGDKTETKKAVEYVEKYAKNEKCSFLEAAEIIFTAKVSGT 717

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--------- 520
              +       K    ++ +  L   A+  S     T +L      ++             
Sbjct: 718  FSRRQLSQGRKVLTTVEMVKRLA--AKEQSLSSLVTAVLNMLPQVRRRAFESRAVVDESG 775

Query: 521  -----FGNEVIDVLDEFLNFTLRN--------EQNSYSS--------LQELISELEQYPP 559
                    +   VLD  L+             E+   +S        L++ +  +     
Sbjct: 776  GKLLNEDEDCRTVLDYLLDDVSEFLCKHIRLQEEVKPNSRQLGCSVLLKDFLDHITVRET 835

Query: 560  TIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
               R     NHN V + T+H +KGLE   VF+V                           
Sbjct: 836  ENFRTRREENHNSVTLTTMHQSKGLEWDSVFIVKANDMETP------------------- 876

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                 + S+ EE  RL YV MTRA  +L I     +   +    
Sbjct: 877  ------------------LLHESSSLEEERRLFYVAMTRARKKLYIVYIVVSPQRQILQP 918

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
              +   +       E    + + + ++++   A   S+    +  +E   TI  +  +  
Sbjct: 919  SRFLSELPRQHLQFEARGYLTVLDVLDEN---ALTDSSAFLRSFNIEARSTIASIFHQWA 975

Query: 739  IPKKLFSPIKNDIN-----EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                   P +  +      +  + + +  +      L+  L+D+  F     I K  + +
Sbjct: 976  KKSAFQDPKRLLMKVGLAIDERLRSKTAKNKDTLHALKRSLTDDAAFAYADQIVKW-EKL 1034

Query: 794  FTLPEHKRKNFITSYCTK 811
                             +
Sbjct: 1035 PAHERSVHMAERQQQLNR 1052


>gi|88856785|ref|ZP_01131439.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
 gi|88813953|gb|EAR23821.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1]
          Length = 1033

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 118/964 (12%), Positives = 266/964 (27%), Gaps = 152/964 (15%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQV----SDINKYVSLSMETGNPTILKKAQTLQQA 56
           L++R    ++               F+V    + +    + ++ TG       A+ L   
Sbjct: 80  LRDRLASRIDAPTLGPMARTANSLAFEVIREAAAVAGDGAPTLLTGAEQDQIIAELLAGE 139

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--RDRF 114
                     S L                     ++    + +L+      ++     R 
Sbjct: 140 IADGSGAPWPSHLD-----------------AEVRRLRGFRTELRDLMMRCVEFGVTPRD 182

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                 ++       A    + Y+  K       F+     +  L +   + A   Y   
Sbjct: 183 LAQLGERNDRPEWVAASAFISVYDAVKASYRDRHFD----ASELLAEAAALIAEGHYAAV 238

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +  +++D+  + +     ++R+L           +   T+   GD   +  SF GA+P
Sbjct: 239 DRLRLVIVDDAHELTEATISLLRALA----------TRGITIIGFGDPDLTTGSFRGAQP 288

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             + R     +       +    + L    R +A + + V  V                 
Sbjct: 289 GVLSRWAEQLE------LENCQTLFLSSVHRHSASLRSAVIDV----------------- 325

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
               + R+G  G ++  + +    +                       S  A  +A+ I+
Sbjct: 326 ----TQRVGVSGLIEQRKSMSVATEPSSI--------------HSFQLSTPAEEVAF-IA 366

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
             +    +  +     +    + V+VR     P +    R L+    ++ V + R  + D
Sbjct: 367 RHLREKHVLES-----VPWSRMAVIVRTGSLIPSLARQLRTLEV---VTSVSSARSAVRD 418

Query: 415 HLAIKDLMALGRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
             ++  L+ L    L +   D  S V +L S +  F    + ++           E    
Sbjct: 419 EFSVNGLIVLLELALERRTLDAASAVELLSSSVGGFDAVSLRRLKAALRHEALGAEIYDS 478

Query: 473 FANCGISKF--------------QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                                  +        L   A   +  D    +L     R    
Sbjct: 479 ADQLIAQALAAPAGFTSIETRVSRQAAAVAKNLHETAAAGAAGDTIEELLWGAWQRSGLA 538

Query: 519 SRF----------GNEVIDVLD---EFLNFTLRNEQNSYSSLQE--LISELEQYPPTIKR 563
            R+            E    LD      +   R  +    +     L   L         
Sbjct: 539 DRWFTQALGSGVVAEEANRHLDAVVALFSSAKRFVERRPDAPANVFLTEWLSADVAEDTL 598

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
           A  +  + V + T  +  G E  VV +      V+ +  ++            G  +   
Sbjct: 599 AARSIVDSVTVGTPASVIGQEFDVVVVAGVQENVWPNLRVR------------GSLLGAH 646

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                       +   ++    +  R+    ++RA+ ++++       N        +  
Sbjct: 647 DLPRVLAGEKLAVADRRREVLHDELRMFAQAISRATREVLVTAVEGDDN----MPSPFLT 702

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
           ++            + L   +          +      + L R         +      L
Sbjct: 703 LIPSPDEPVRARPPLSLRGLVGVLRRELTTSANPGAAASSLARLAREGVPGADPSSWYGL 762

Query: 744 FSPI-------KNDINEPYILNPSTIDTKGKTNLESLLS------DNQTFNRGLIIHKLL 790
            SP         ++ +    ++PS +++     L   +        N   N G +IH + 
Sbjct: 763 RSPSTTAPLVDLSEPDAKVRVSPSRMESFESCPLHWAIDQLGGSTSNTASNLGTLIHGVA 822

Query: 791 QVIFTL-PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
           +       E   K     +   + +     E + L            +    + +    +
Sbjct: 823 ETATDFNAEALFKAVEDRWSEMSFEASWQSEAEKLRAKKLTQHLATYLRD-FTANGGELI 881

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQ-NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           S       P +  ++SG+ID++ +       I + KT  + P   + +      QL+ Y+
Sbjct: 882 SNEMGFTLPLEQALLSGKIDRVEMYGGTTAVIVDLKTGKNEPSTDKAVADH--PQLAAYQ 939

Query: 909 KILK 912
               
Sbjct: 940 LAFA 943


>gi|310830868|ref|YP_003965969.1| DNA helicase II [Paenibacillus polymyxa SC2]
 gi|309250335|gb|ADO59901.1| DNA helicase II [Paenibacillus polymyxa SC2]
          Length = 737

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 101/602 (16%), Positives = 187/602 (31%), Gaps = 114/602 (18%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK---NCVLDFEDLI 153
           +E++++       I+++   Y   +    S+  A  +   YEE K     N ++D++D++
Sbjct: 158 EEQMEELLSYISYIKNKLIPYDQLEDIETSIPSASEIFLSYEEFKCADFTNRLVDYDDML 217

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +  ND L+K    A +  +     ++ L DE QD SL+Q  +I  L              
Sbjct: 218 VIANDALEKD---AGMLAEYQSMFDYFLTDESQDNSLVQNLIIEKLVRL----------K 264

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             +  V D+ QSIY + GA P+ +L  K +             I+ +  ++RST DI+ V
Sbjct: 265 GNICVVADDDQSIYGWRGAAPEYLLNFKEVYPN--------AKILYMVQNYRSTKDIVEV 316

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            ++     +N       +                                P Q S    +
Sbjct: 317 ANQFIKRNKNRYDKEMFT--------------------------EKESFKPIQLSHLDTY 350

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           ++                 I +++         K+  I         R    +  +    
Sbjct: 351 EA----------------QIRHIVEKVKYAPVKKEVAILY-------RNNSSSIALIDEL 387

Query: 394 RFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                   I     D       H  I+D++   R   S +  +    +        ++  
Sbjct: 388 E----HQGIPFYIKDSDNKFFSHWIIEDILNFMRMSYSDKHPILLEKIHTKFNGYINKPQ 443

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           I  +    ++       ++          +  +    E+        P     +I     
Sbjct: 444 IEYLKEINNKASVFDNLLKLNVPVYQ---RKNLGKCKEIFKRINQLRPDQAIRVIRDELG 500

Query: 513 GRQQFIS--RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANH 569
             ++ +          + L   LN TL+   +   +L++    L        +       
Sbjct: 501 YEKKLVKMCESLGFKKEYLLSILN-TLQGIGSKLETLKDFAERLNYLRKVLSQSKFEKGK 559

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + V + T H++KGLE   V ++D    V   K + K                        
Sbjct: 560 DVVTLSTFHSSKGLEFNQVIMIDLIEGVIPSKEVIKDF---------------------- 597

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                  K  K    EE  RL YVGMTRA   L +  +     E         D+    F
Sbjct: 598 -------KSGKIDEMEEAVRLFYVGMTRARTDLELISYKRKDGESVQESSFVKDVKQIMF 650

Query: 690 HN 691
            N
Sbjct: 651 PN 652


>gi|317178737|dbj|BAJ56525.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori F30]
          Length = 676

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 97/683 (14%), Positives = 191/683 (27%), Gaps = 187/683 (27%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
               +  L Q    +K + +    K +    +K   +      +   +      +   A 
Sbjct: 95  EHYPNLSLKQPKELKKLLESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAW 154

Query: 127 L-----------TLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKID 174
           L           T  + +   +E  KKK+  +D+ DL++     +L++            
Sbjct: 155 LSHKNPEHTPYATFYENILDEFENTKKKHNYIDYNDLLLLFKQAMLERP----------- 203

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+ 
Sbjct: 204 SPYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADI 251

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +    +  +           +  L  ++RS+ +IL + ++V    E     S +   +
Sbjct: 252 SIISNFTQKYKN--------AQVFTLTKNYRSSKEILDLANQVIQHNERIYPKSLEVVKS 303

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                                        P   ++                 + IA  I 
Sbjct: 304 GHFN------------------------KPALLNYNDNI----------AQCQDIAKRI- 328

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                              K++ V+ R       +    R     Y +           +
Sbjct: 329 -------------VMRKNFKEVAVIFRNNASADQLEAALRS----YNVPSKRKGSASFFE 371

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS------------------------- 449
              +   + +   I + +D ++ + +L S + +                           
Sbjct: 372 SKEVALALDICALIFNPKDIMAAIHVL-SYISDIGSNTAKDIHEALMLLGNGDLKLALIE 430

Query: 450 -------------------EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIK 486
                                +IF +         + +           K       ++ 
Sbjct: 431 PDKEAKIYTKKKEITSMGLFKEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLS 490

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKG---RQQFISRFGNEVIDVLDEF--LNFTLRNEQ 541
               L   A   SP      IL +      + + +           +EF  L    R  +
Sbjct: 491 DFFILYTKAPTHSPSALIKHILESAFFQTSKTRLLKERSKNKDGSYNEFKKLQAQKRFNE 550

Query: 542 NSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                SSL +    L        I  + +     V +++VH +KGLE   V+++D     
Sbjct: 551 KMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGR 610

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F +  +                                         EE  RL YV +TR
Sbjct: 611 FPNHKLMNTGGG----------------------------------IEEERRLFYVAITR 636

Query: 658 ASDQLIICKHSNTSNEKKSNQRT 680
           A + L +    N   E    +  
Sbjct: 637 AKENLWLSYAKNELRENAKPKEH 659


>gi|223889347|ref|ZP_03623933.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 64b]
 gi|223885033|gb|EEF56137.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 64b]
          Length = 1169

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 141/852 (16%), Positives = 266/852 (31%), Gaps = 113/852 (13%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIILKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQH 483
            + +  ++   +   +L S + N   +    +  Q      E   E I            +
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWNLQRILIKQDKIHLIEEFIENIIVLLEKNEITLIN 636

Query: 484  VIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
             I  I    +  I IA                  +   I     E +   +  L    + 
Sbjct: 637  AINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIISKI 696

Query: 539  -NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL++
Sbjct: 697  YHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLSMNIVFLLN 756

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T     S+   KK        D      +          + +  K+ +     E   + Y
Sbjct: 757  TTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNIFY 808

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA   L I K ++ +++     + +         N       K  N    +  +  
Sbjct: 809  VGATRAKFALFIIKINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFNKKKDNTNVNT 868

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
            +     P    + ++E                     +  E Y       + + + + E 
Sbjct: 869  KLIPPKPIIKNMFKKEYTSSFSSLTA------QAHHKEFYENYDFKNINYEKETELDYEP 922

Query: 773  LLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYK 822
             L +   +  + G I+H  ++ I                   I     K        E +
Sbjct: 923  GLEETLPKGKDIGNILHAAMEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNTIEIQ 982

Query: 823  -NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP----------------- 858
             +L   I  +L       N  +      +   E+    KIN                   
Sbjct: 983  NSLAKMIYNILTYNIRAINTRLCDV--EELQKEMEFLIKINPEFQKQKYLFDKHFEDLHI 1040

Query: 859  -KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYE 908
               D  + G +D I  +   I+I +YKT++    + ++             +  Q  IY 
Sbjct: 1041 KLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQYKIYA 1100

Query: 909  KILKDS-YPNKS 919
              +K   + NK 
Sbjct: 1101 LGIKKILFKNKK 1112


>gi|226321331|ref|ZP_03796858.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi Bol26]
 gi|226233127|gb|EEH31879.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi Bol26]
          Length = 1169

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 145/856 (16%), Positives = 274/856 (32%), Gaps = 121/856 (14%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQH 483
            + +  ++   +   +L S + N   +    +  Q      E   E I            +
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWNLQRILIKQDKIHLIEEFIENIIVLLEKNEITLIN 636

Query: 484  VIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
             I  I    +  I IA                  +   I     E +   +  L    + 
Sbjct: 637  AINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIISKI 696

Query: 539  -NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL++
Sbjct: 697  YHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLGMNIVFLLN 756

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T     S+   KK        D      +          + +  K+ +     E   + Y
Sbjct: 757  TTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNIFY 808

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA   L I         K ++  +    +   F  D+      +   I +  +   
Sbjct: 809  VGATRAKFALFII--------KINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFNKK 860

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLF----SPIKNDINEPYILNPSTIDTKGKT 768
            +++T+   NT L   + I + M +++               +  E Y       + + + 
Sbjct: 861  KYNTNV--NTKLIPPKPIIKNMFKKEYTSSFSSLTAQAHHKEFYENYDFKNINYEKETEL 918

Query: 769  NLESLLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPA 818
            + E  L +   +  + G I+H  ++ I                   I     K       
Sbjct: 919  DYEPGLEETMPKGKDIGNILHAAMEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNT 978

Query: 819  KEYK-NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP------------- 858
             E + +L   I  +L       N  +      +   E+    KIN               
Sbjct: 979  IEIQNSLAKMIYNILTYNIRAINTRLCDI--EELQKEMEFLIKINPEFQKQKYLFDKHFE 1036

Query: 859  -----KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQL 904
                   D  + G +D I  +   I+I +YKT++    + ++             +  Q 
Sbjct: 1037 DLHIKLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQY 1096

Query: 905  SIYEKILKDS-YPNKS 919
             IY   +K   + NK 
Sbjct: 1097 KIYALGIKKILFKNKK 1112


>gi|218249700|ref|YP_002375134.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi ZS7]
 gi|218164888|gb|ACK74949.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi ZS7]
          Length = 1169

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 145/856 (16%), Positives = 274/856 (32%), Gaps = 121/856 (14%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQH 483
            + +  ++   +   +L S + N   +    +  Q      E   E I            +
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWNLQRILIKQDKIHLIEEFIENIIVLLEKNEITLIN 636

Query: 484  VIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
             I  I    +  I IA                  +   I     E +   +  L    + 
Sbjct: 637  AINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIISKI 696

Query: 539  -NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL++
Sbjct: 697  YHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLGMNIVFLLN 756

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T     S+   KK        D      +          + +  K+ +     E   + Y
Sbjct: 757  TTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNIFY 808

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA   L I         K ++  +    +   F  D+      +   I +  +   
Sbjct: 809  VGATRAKFALFII--------KINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFNKK 860

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLF----SPIKNDINEPYILNPSTIDTKGKT 768
            +++T+   NT L   + I + M +++               +  E Y       + + + 
Sbjct: 861  KYNTNV--NTKLIPPKPIIKNMFKKEYTSSFSSLTAQAHHKEFYENYDFKNINYEKETEL 918

Query: 769  NLESLLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPA 818
            + E  L +   +  + G I+H  ++ I                   I     K       
Sbjct: 919  DYEPGLEETMPKGKDIGNILHAAMEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNT 978

Query: 819  KEYK-NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP------------- 858
             E + +L   I  +L       N  +      +   E+    KIN               
Sbjct: 979  IEIQNSLAKMIYNILTYNIRAINTRLCDI--EELQKEMEFLIKINPEFQKQKYLFDKHFE 1036

Query: 859  -----KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQL 904
                   D  + G +D I  +   I+I +YKT++    + ++             +  Q 
Sbjct: 1037 DLHIKLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQY 1096

Query: 905  SIYEKILKDS-YPNKS 919
             IY   +K   + NK 
Sbjct: 1097 KIYALGIKKILFKNKK 1112


>gi|167746761|ref|ZP_02418888.1| hypothetical protein ANACAC_01473 [Anaerostipes caccae DSM 14662]
 gi|167653721|gb|EDR97850.1| hypothetical protein ANACAC_01473 [Anaerostipes caccae DSM 14662]
          Length = 1032

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 103/674 (15%), Positives = 184/674 (27%), Gaps = 172/674 (25%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
              P      + ++K   L  E         A T    +  +  E     L      +  T
Sbjct: 480  AGPGTGKTKTLVDKIAYLVKERNVSPSQVTAVTFTNQAAAEMRERLAKRLGGKRAVKDMT 539

Query: 80   PQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL---------- 127
                 +I  Q + ++  D+   L    +     ++  N     K     L          
Sbjct: 540  IGTFHSICLQLLKQQGEDII--LADEAELLETAKEALNRLDSDKKPKDFLKQISNFKNNV 597

Query: 128  ----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 L       ++E   +  + DF+DL++      +   +          + +++L+D
Sbjct: 598  PMEERLTNDEADCFQEIMSEMGLTDFDDLLLRVLSQAESPVLQT-------SQFSYLLVD 650

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
            E QD + IQ+ ++           + + + + LF +GD  QSIY F G++ +   R K  
Sbjct: 651  EFQDINDIQFRLV----------LSWNQNGKELFVIGDPDQSIYGFRGSDSRCFARLKEE 700

Query: 244  NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                          I L  ++RST +I+    +V S     +                  
Sbjct: 701  IPDLYE--------IYLKKNYRSTPEIVESALQVISRNPGNKR----------------- 735

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                  L          +       W+               A  IA  I+ + G   + 
Sbjct: 736  -----CLSAVREPGKPVRLVTASNDWS--------------EAIFIAKEINRLTGGMDMM 776

Query: 364  SNGKK-----RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                            +I VL R       I    R       I  V   +    +   +
Sbjct: 777  DAQNYALKTEHPRGFGEIAVLYRTHHQARAIEKCLRQE----SIPCVITGQDSFLEEEKV 832

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            K   +  RF+L ++D  +    L                                     
Sbjct: 833  KGTTSFFRFLLDEKDTKALQIALN------------------------------------ 856

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
              F        E   + +  SP +   L +               ++             
Sbjct: 857  -AFPDCGTLEKEFKQLLKKESPGEVLKLWMEKNGLLDDESLLSLYKM------------T 903

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  +S    +    +             + V +MT+H +KGLE PVVF+  T     
Sbjct: 904  LFHKDMASFLSNLLLGTEGDIKRSGEKEYTSDAVTLMTLHGSKGLEFPVVFIAGTKQGSI 963

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              +                                        + +EE  RL YVGMTRA
Sbjct: 964  PLESP-----------------------------------AHHADKEEERRLFYVGMTRA 988

Query: 659  SDQLIICKHSNTSN 672
             ++LI+     +S 
Sbjct: 989  KEELILLTRKESSE 1002


>gi|261838287|gb|ACX98053.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori 51]
          Length = 676

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 101/684 (14%), Positives = 193/684 (28%), Gaps = 189/684 (27%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
               +  L Q    +K + +    K +    +K   +      +   +      +   A 
Sbjct: 95  EHYPNLSLKQPKELKKLLESIVDTKNALTDDDKKPYTSQHLYALYSLYTNALKQEDFSAW 154

Query: 127 L-----------TLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKID 174
           L              + +   +E  KKK+  +D+ DL++     +L++            
Sbjct: 155 LSHKNPEHTPYAAFYENILDEFENTKKKHNYIDYNDLLLLFKQAMLERP----------- 203

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+ 
Sbjct: 204 SPYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADI 251

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +    +  +           +  L  ++RS+ +IL + ++V    E     + +   +
Sbjct: 252 SIISNFTQKYKN--------AQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKS 303

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                                        P   ++                 + IA  I 
Sbjct: 304 GHFN------------------------KPTLLNYNDNI----------AQCQDIAKRI- 328

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                              K++ V+ R       +    R     Y +           +
Sbjct: 329 -------------VMRKNFKEVAVIFRNNASADQLEAALRS----YNVPSKRKGSASFFE 371

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS------------------------- 449
              +   + +   I + +D ++ + +L S + +                           
Sbjct: 372 SKEVALALDICALIFNPKDIMAAIHVL-SCISDIGSNTAKDIHEALMLLGNGDLKLALTH 430

Query: 450 -------------------EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIK 486
                               ++IF +         + +          SK       ++ 
Sbjct: 431 PSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHSKISLNGAKMLS 490

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNE 540
               L   A   SP      IL      Q F +R   E     D    EF  L    R  
Sbjct: 491 DFFILYTKAPTHSPSALIKHILE-SVFFQIFKTRLLKERSKNKDGSYNEFKKLQAQKRFN 549

Query: 541 QNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +     SSL +    L        I  + +     V +++VH +KGLE   V+++D    
Sbjct: 550 EKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEG 609

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F +  +                                         EE  RL YV +T
Sbjct: 610 RFPNHKLMNTGGG----------------------------------IEEERRLFYVAIT 635

Query: 657 RASDQLIICKHSNTSNEKKSNQRT 680
           RA + L +    N   E    +  
Sbjct: 636 RAKENLWLSYAKNELRENAKPKEH 659


>gi|33519733|ref|NP_878565.1| exonuclease V, beta chain [Candidatus Blochmannia floridanus]
 gi|33504078|emb|CAD83339.1| exonuclease V, beta chain [Candidatus Blochmannia floridanus]
          Length = 1208

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 136/917 (14%), Positives = 287/917 (31%), Gaps = 171/917 (18%)

Query: 103  SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA-HYEEAKKKNCVLDFEDLIINTNDLLK 161
              D   ++  R  ++++    +        L   HY         + F+DL      LL 
Sbjct: 311  LFDLIEQLYRRIESFQLLILHMVMDDFQHNLYNMHYT-----RSQITFDDL----VKLLL 361

Query: 162  KRD---VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
                   +  +   I ++    +IDE QDT   Q+++  +L              + L  
Sbjct: 362  YNGFKNKNNKLIKNILEQYPVTIIDEFQDTDQNQYKIFHTLY------NTHTDQKKCLIL 415

Query: 219  VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            +GD KQ+IY F GA     ++ ++    +            L +++RS+  ++  ++++F
Sbjct: 416  IGDPKQAIYGFRGANIFTYMQIRQSLHYKY----------YLNINWRSSPGMVNAINQLF 465

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
               +          + I    S         +  Q+ S            W    + +  
Sbjct: 466  ---QVPNPFVFKDISFIPSIPSYKNNKHQFLIHNQLQSPLC--------FWLYSHECITM 514

Query: 339  ESSASILARRIAYTISNMIGTDT------IFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +  +I+A+  +  + N++            +  KK+++Q  DI +LVR   +      L
Sbjct: 515  NNYKTIMAQECSIVLQNLLYNIHNKTAWLENNICKKKILQTSDIAILVRNHSEAS----L 570

Query: 393  TRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
             R       I     + R  + + +   +L+ L R IL  + D      L +  F F+  
Sbjct: 571  IRSELLKRNIPTTFLSSRRNIFETIESYELLLLIRAILFPKLDT-ICTALTTIFFKFNAT 629

Query: 452  DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
            D+  I       E +++   ++     +   +++  I +++        +     +L   
Sbjct: 630  DVENIHNNTFRWEQIFKEFSEYYLIWKN--NNILSMIKKILFR------YKIPETLLSNP 681

Query: 512  KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAH 565
              +   I+         L E LN   +   + +S +Q L   +       Q     K   
Sbjct: 682  SEKNSLINIL------HLGELLNDFSKQCHSKHSLMQWLEYNIYYPQNQNQSAEHHKLRF 735

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            + +H+ ++I T+H +KGLE P+ +L        + +      I+ S      +       
Sbjct: 736  NDDHHLIKISTIHQSKGLEFPITYLPFISCYTNTKRFSNNQKILQSTPYANLL------- 788

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII----CKHSNTSNEKKSNQRTW 681
                   S  +         E  RLLYV +TR+     I      + +            
Sbjct: 789  -----QSSSTLDFFDLERLSEDLRLLYVAITRSIYHCSIGIAPIIYKSRHKNTLHTTDLH 843

Query: 682  YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP---------------------- 719
            +  +     N +     +L   + K    + +  T                         
Sbjct: 844  HSALGYLIQNKKPNTPQELKQCLQKLSISSNKNITFRIISKISKKSKLYCNCTKTINITN 903

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI----------------- 762
            +   L  ++  K ++ +       ++            + ST                  
Sbjct: 904  QTKSLHAKKWQKPILWKTYNNIWRYTSYSELKKNIITDSSSTEYLNIQNIFDFNFDDYIN 963

Query: 763  DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
            + K  +NL +  +  +    G+  H L + +        ++  T     N  L      +
Sbjct: 964  NKKTPSNLLTAHTFPKGKVCGMFFHDLFKFLNFRKTINTRSLQTHMERYNINLNWTIPLQ 1023

Query: 823  NLLLSITRLLENP------MMTTAMSCDSYSEVSVSG----------------------- 853
                 I  ++  P       ++  +  ++ +E+  S                        
Sbjct: 1024 ---KWIYTIINTPINSDYLTLSKIIPENTQTELKFSLCIKNTLTPHKLDKLCKYYDPLSL 1080

Query: 854  ---KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHI 901
                +N      I+ G ID I   +   ++ +YKT+              E   I Y + 
Sbjct: 1081 RAPILNFETVTGILHGFIDLIFYWKNKYYLLDYKTNWLGNNNNFYTQTMIEKNMIQYRYE 1140

Query: 902  AQLSIYEKILKDSYPNK 918
             Q  +Y   L     +K
Sbjct: 1141 LQYQLYTIALHRFLQHK 1157


>gi|216264167|ref|ZP_03436159.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 156a]
 gi|215980640|gb|EEC21447.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 156a]
          Length = 1169

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 141/852 (16%), Positives = 266/852 (31%), Gaps = 113/852 (13%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQH 483
            + +  ++   +   +L S + N   +    +  Q      E   E I            +
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWNLQRILIKQDKIHLIEEFIENIIVLLEKNEITLIN 636

Query: 484  VIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
             I  I    +  I IA                  +   I     E +   +  L    + 
Sbjct: 637  AINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIISKI 696

Query: 539  -NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL++
Sbjct: 697  YHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLGMNIVFLLN 756

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T     S+   KK        D      +          + +  K+ +     E   + Y
Sbjct: 757  TTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNIFY 808

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA   L I K ++ +++     + +         N       K  N    +  +  
Sbjct: 809  VGATRAKFALFIIKINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFNKKKDNTNVNT 868

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
            +     P    + ++E                     +  E Y       + + + + E 
Sbjct: 869  KLIPPKPIIKNMFKKEYTSSFSSLTA------QAHHKEFYENYDFKNINYEKETELDYEP 922

Query: 773  LLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYK 822
             L +   +  + G I+H  ++ I                   I     K        E +
Sbjct: 923  GLEETLPKGKDIGNILHAAMEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNTIEIQ 982

Query: 823  -NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP----------------- 858
             +L   I  +L       N  +      +   E+    KIN                   
Sbjct: 983  NSLAKMIYNILTYNIRAINTRLCDI--EELQKEMEFLIKINPEFQKQKYLFDKHFEDLHI 1040

Query: 859  -KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYE 908
               D  + G +D I  +   I+I +YKT++    + ++             +  Q  IY 
Sbjct: 1041 KLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQYKIYA 1100

Query: 909  KILKDS-YPNKS 919
              +K   + NK 
Sbjct: 1101 LGIKKILFKNKK 1112


>gi|78184983|ref|YP_377418.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. CC9902]
 gi|78169277|gb|ABB26374.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp.
            CC9902]
          Length = 1208

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 110/864 (12%), Positives = 222/864 (25%), Gaps = 172/864 (19%)

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
             + F  L+      +   D        + +    +++DE QDT  +QW ++R    D   
Sbjct: 367  AITFAGLL----AAMDPGDGQVDWLAPLQERYRAVMVDEFQDTDPVQWRLLRRAFGDRI- 421

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                      L  VGD KQ+IY F G +    L  ++          Q   I  L  +FR
Sbjct: 422  -------HHLLLLVGDPKQAIYRFRGGDLGTYLEARQ----------QVDRIDHLLDNFR 464

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            +TA ++  ++ + +       L   +                       V Q        
Sbjct: 465  ATASLMDGLNTLMAPGMPRSHLEIPAVRAQA------------------VDQVSPTTAAL 506

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
            Q           + +    L + +A  +  ++                 D+ VLV + + 
Sbjct: 507  QLLELELDTPASRTALEQQLPQHLAAVVFEILEGPDQPD--------PSDLCVLVSRHQQ 558

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                    R       I      +  + +  A   +  L   +    DD     ++ SPL
Sbjct: 559  ATD----LRRALGAAGIPSRLVTQGDVLESEAALVVQRLLDALADPGDDRCLRLLVSSPL 614

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
             N+S +                      A         + + +                 
Sbjct: 615  MNWSLE----------------------AMENEGGLDQLAEQLRLWERALPKLGLMGCLA 652

Query: 506  LILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
             +L     R   +S  G  + D   +   +   +  +    ++    +     +P T   
Sbjct: 653  QLLE--GQRTADLSERGRMLGDLQQVGRLVQEAMHRQGLDSATAANWLRRERLHPTTPVP 710

Query: 564  AH-----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                         V ++TVH +KGLE PVV         +     +   +     D    
Sbjct: 711  EARQPHSDQADQAVAVVTVHRSKGLEYPVVICPYL----WQAPRQESGPLWRETGDGRWF 766

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                      +                E  RL YV MTRA  QL++     ++ ++ +  
Sbjct: 767  IAIDSHWGKGHRAAQQATDDA----MAEAERLAYVAMTRARSQLMVVWVR-STGQEGAPL 821

Query: 679  RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM---- 734
              W         + ++    +L  ++++            P            +      
Sbjct: 822  PCWLFGADAIHDSVDQFNDDRLDLALSERGVSLLRRVLPDPLLPSQRWRSLPSEQPLGLG 881

Query: 735  --DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES--------------LLSDNQ 778
                +       +     I+ P                E               L    +
Sbjct: 882  ETPGRIDRSWGRASYSAWISAPVDPVVHEQGRDPDPGAEECSLTGPELWPEQGPLADFPR 941

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL------- 831
                G  +H++L+ I           +     + A +        L  ++  +       
Sbjct: 942  GAVAGDCLHRILEQIPYQAADADDPSLLDSL-RAAVIDSELRRAGLDCNLQSMVMEGLGY 1000

Query: 832  ---------LENPMMTTAMSCDSYSEVSVSGKI----------------NCPKKDIII-- 864
                     LE   ++         E+S    +                N       I  
Sbjct: 1001 VLKTPLGGPLEQLQLSQLGLKQRIHELSFDLPVGHVRTKDLVQAFHCSPNARFGGRYIDH 1060

Query: 865  ------------SGRIDQISISQQ--NIFIFEYKTH----HHVPQEIEHIPYTHIAQLSI 906
                        +G ID +         ++ ++K++                 H  Q   
Sbjct: 1061 LATLGVNSRGFLTGSIDLVFCDPHQSRWWVLDWKSNWIGERRSEGSPGRCGPRHYHQ--- 1117

Query: 907  YEKILKD--SYPNKSLVCLLIYVS 928
                +++   + +  L   L  V+
Sbjct: 1118 --DAMQEQMIHHHYPLQAHLYLVA 1139


>gi|307730566|ref|YP_003907790.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
 gi|307585101|gb|ADN58499.1| UvrD/REP helicase [Burkholderia sp. CCGE1003]
          Length = 812

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 99/771 (12%), Positives = 206/771 (26%), Gaps = 125/771 (16%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQ 60
            R    +      I              +  +       G   + + A+   L  A    
Sbjct: 111 RRAAQEMTRRVTRIATAALGTRAALAQGL-TWAGTFHSVGARLLREYAELIGLAPAFTIN 169

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++        + +      +       +  ++  +     ++ D  N +   
Sbjct: 170 DREDSADLMNLVRHELGLSAKGRRFPAKG--TCFAIYSRVVNTGASLGQVLD--NAFPWC 225

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +   A L +   L A Y +AK+K  VLD++DL++  + +  +  ++A     +    +H+
Sbjct: 226 REWEADLRM---LFAAYVDAKQKQSVLDYDDLLLYWSHMAAEPAIAAD----LSARFDHV 278

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF GA  + +L  
Sbjct: 279 LVDEYQDTNRLQASILLAL----------KPDGRGLTVVGDDAQSIYSFRGATVRNILDF 328

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                          + + L  ++RST  IL   + V  +       +  +      R  
Sbjct: 329 PAQF-------DPPATRVTLERNYRSTQPILAASNAVIELASERYTKNLWTDKASAQRPR 381

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
            +     V                                     AR +   +       
Sbjct: 382 LVTVADEVD-----------------------------------QARYVVEQVLEAREQG 406

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     ++ K   VL R    +  +            I  V        D + +KD
Sbjct: 407 ----------VKLKSQAVLFRAAHHSAALEIEL----TRRNIPFVKFGGLKFLDSVHVKD 452

Query: 421 LMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           ++A+ R+  +  D ++   +  L   +   +   +      R +  +  E        G 
Sbjct: 453 MLAVLRWAENPRDRVAGFRVVQLLPGVGPATAAKLLDDIAARMDAGSAGEATSDAIGTGA 512

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---------------- 522
           ++              A   +         G   G     +                   
Sbjct: 513 ARGTAAGTAAGTAAGTATGTAAGTRAGTAAGTSTGATAGTATGTATDTTTGIGTTGSASA 572

Query: 523 --------------NEVIDVLDEFLNFTLRNEQNSYSSLQEL---ISELEQYPPTIKRAH 565
                             +    F+               E        E +        
Sbjct: 573 ANKAARALAAFTPPPRAQEDWHPFVKLMSSVYGRETPWPAEFEMVRRWYEPHLARNHEDA 632

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
           +  H +V  M             FL +           +    +   +      I   + 
Sbjct: 633 AVRHADVLQMESIAGTYASRER-FLTELTLDPPDATSDESGVPLIDEDYLILSTIHSAKG 691

Query: 626 KSR---------NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
           +           +  +   +    +   +E  RLLYV MTRA + L I          ++
Sbjct: 692 QEWRNVFVLNGVDGCIPSDLGTGSQEEIDEERRLLYVAMTRAKEDLHIVVPQRFYVHNQT 751

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
           +    +     +      +  +    +  +    +   +         + E
Sbjct: 752 HLGDRHVWASRTRFIPADLMPLFDAYAWPRVPEPSAPTAAGLAAAARAKLE 802


>gi|152990115|ref|YP_001355837.1| putative recombination protein RecB [Nitratiruptor sp. SB155-2]
 gi|151421976|dbj|BAF69480.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp.
           SB155-2]
          Length = 855

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 114/876 (13%), Positives = 246/876 (28%), Gaps = 223/876 (25%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
              +   +  + +  F  T+    +  ++ +E          ++++   +      ++  
Sbjct: 200 EAKKRDFQPVARVEEFLFTKSGGIRAWLMKEEFKIPGVPASHEVQEIFVQLKNAIKKYYD 259

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
           +K  K         +      +    +   LDF D+   T DLL+      ++ +++D +
Sbjct: 260 FKEAKFLQTLFDYYEQFKIQRKRLIAQRNALDFTDIKHYTYDLLQDSIEKDFLYFRLDSK 319

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           I+HIL DE QDTS+  W++   L ++   G       R+ F VGD KQ+IY F G + + 
Sbjct: 320 ISHILFDEFQDTSVEDWKIFEPLVDEIASGMGVQE-QRSFFYVGDVKQAIYGFRGGQAEL 378

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                R    +            L +++RS                    + E       
Sbjct: 379 FDWVARRYGMQIEE---------LDVNYRS-----------------RSNIVEYVNEMFG 412

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                    G V++ E      D                             +   +  +
Sbjct: 413 LEQKSDKTGGYVEVRESESLLED-----------------------------LQAKVQML 443

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           + +           +Q   I +LV    D   +    +       +    +   +L    
Sbjct: 444 LDSG----------VQEDQIAILVPTNNDVFQVADFLQESL---GLKATTSSSKLLIHQP 490

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
             K ++   ++I S                               E   ++ +    +  
Sbjct: 491 YAKAIIEAIKYIYS------------------------------KEKIHLFNFQSVASQE 520

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                          +   +   P      I                   D + E L  +
Sbjct: 521 ---------------LDTFKEHKPVQLIRKIADRYDLWD-----------DSVLELLEHS 554

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +         ++E + +++Q    +     +    V ++TVH +KGL      ++D    
Sbjct: 555 VTY-----KDIEEFVEKIDQCGIEV----QSASQGVEVLTVHKSKGLAFEHTIVLD--RL 603

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                  + +       D   + +     +  +     L++  ++   +E   + YV +T
Sbjct: 604 GLDRSRKENIIFDYEGIDLKRVVLRQKGREQFDQEYRQLLEKEEQKELQELRNVAYVALT 663

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA D LI+          K+     Y  + ++   +   +K      I    W    +  
Sbjct: 664 RAKDSLIVL---------KNPNSKRYGFLQETRRGEVVAQKSGNDEKIVPFAWKMRNYGK 714

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                    R    K +   +   + L                  I      +  +LLSD
Sbjct: 715 QEIIEEAEYRPNDFKAIYKGEAYHQSL-----------------EIGFAYAKSRFALLSD 757

Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                        L+ +                         +E + +   I +      
Sbjct: 758 -------------LEHM------------------------QEEVEKVQEMIEKR----- 775

Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                    Y E+            +   G ID +    +   I +YK+     +     
Sbjct: 776 ----FKPICYKEIPF-----VSGDKL---GIIDLLIEEDERYIIIDYKSTRPHDES---- 819

Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
              +I Q+  Y++ ++     K     L+Y+ E ++
Sbjct: 820 --GYIKQVQFYKESIEKI-TGKKAEGYLLYIDELQL 852


>gi|226320369|ref|ZP_03795938.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 29805]
 gi|226234232|gb|EEH32944.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 29805]
          Length = 1169

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 143/858 (16%), Positives = 277/858 (32%), Gaps = 125/858 (14%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK----F 481
            + +  ++   +   +L S + N   +   +    + +   + E   +     + K     
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWN--LQRILIKQDKICLIEEFIENIIVLLEKNEITL 634

Query: 482  QHVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             + I  I    +  I IA                  +   I     E +   +  L    
Sbjct: 635  INAINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIIS 694

Query: 538  R--NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            +  +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL
Sbjct: 695  KIYHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLGMNIVFL 754

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            ++T     S+   KK        D      +          + +  K+ +     E   +
Sbjct: 755  LNTTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNI 806

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             YVG TRA   L I         K ++  +    +   F  D+      +   I +  + 
Sbjct: 807  FYVGATRAKFALFII--------KINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFN 858

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----SPIKNDINEPYILNPSTIDTKG 766
              +++T+   NT L   + I + M +++               +  E Y       + + 
Sbjct: 859  KKKYNTNV--NTKLIPPKPIIKNMFKKEYTSSFSSLTAQAHHKEFYENYDFKNINYEKET 916

Query: 767  KTNLESLLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLW 816
            + + E  L +   +  + G I+H  ++ I                   I     K     
Sbjct: 917  ELDYEPGLEETLPKGKDIGNILHAAMEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNL 976

Query: 817  PAKEYK-NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP----------- 858
               E + +L   I  +L       N  +      +   E+    KIN             
Sbjct: 977  NTIEIQNSLAKMIYNILTYNIRAINTRLCDI--EELQKEMEFLIKINPEFQKQKYLFDKH 1034

Query: 859  -------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIA 902
                     D  + G +D I  +   I+I +YKT++    + ++             +  
Sbjct: 1035 FEDLHIKLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDL 1094

Query: 903  QLSIYEKILKDS-YPNKS 919
            Q  IY   +K   + NK 
Sbjct: 1095 QYKIYALGIKKILFKNKK 1112


>gi|220913220|ref|YP_002488529.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
 gi|219860098|gb|ACL40440.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6]
          Length = 717

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/681 (13%), Positives = 192/681 (28%), Gaps = 162/681 (23%)

Query: 2   KNRFGLSLN-ESYELIYKDLW--PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
           +  +G+     + + +    +         S +    + +++    T    A    Q   
Sbjct: 58  RIAYGVHSGVYTPQRLLAVTFTARAAAEMRSRLRDLGAGNVQ--ARTFHAAALRQLQFFW 115

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            Q +      L            + +          DL  +++ ++   +   +     +
Sbjct: 116 PQAVGGTLPNLLEHKAQTLAEAARRLRLSTDRASIRDLASEIEWAKVSMLTPANYLENAQ 175

Query: 119 MFKSTLAS-LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              +     LT    +   YE+ K    V+DFED+++ T  +L++ +    +   + ++ 
Sbjct: 176 DRGAPGGFDLTAVARVFQSYEDVKTDRNVIDFEDVLLITVGILQEDE---KVAATVREQY 232

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            H ++DE QD S +Q  ++                   L  VGD  Q+IYSF GA P+ +
Sbjct: 233 RHFVVDEYQDVSPLQQRLLELWLG----------GRDELCVVGDASQTIYSFTGASPRHL 282

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS-IPENAQGLSEDSTTTIR 296
           L  K    +         ++++L   +RST  ++ + + + +                ++
Sbjct: 283 LDFKARYPQ--------ANVVKLIRDYRSTPQVVKLANDLLAGRRSGGPAADAAWAAPLQ 334

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             + R                                    + +     A  +A  I  +
Sbjct: 335 LVAQRPAGPVPT---------------------------FTECTDDEAEAATVAQKIKAL 367

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +   T           A ++ +L R    +               I              
Sbjct: 368 LDAGTP----------ASEVAILFRTNGQSEAYEQALAA----AGIGYQLRGGERFFARK 413

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            ++D +   R                 PL     D +  +                 A  
Sbjct: 414 EVRDAILQLRAAT----RAVSEEGASEPLGQLVRDIVSSLGY------------TDSAPH 457

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                +   + +  L+ +A                                  DE +   
Sbjct: 458 SGGALRERWESLAALVALA----------------------------------DELVKV- 482

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               +     L + ++EL++               V + ++H AKGLE   VFLV     
Sbjct: 483 ----RGPEFGLADFVNELQERSLAQHAPTVQG---VTLASLHAAKGLEWDAVFLVGLSEG 535

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +                                     +       + +E  RLLYVG+T
Sbjct: 536 LMP-----------------------------------ISFADSPESVDEERRLLYVGIT 560

Query: 657 RASDQLIICKHSNTSNEKKSN 677
           RA + L +   +  +   ++N
Sbjct: 561 RARENLSLSWSTARTPGGRAN 581


>gi|304439647|ref|ZP_07399550.1| DNA helicase II [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371887|gb|EFM25490.1| DNA helicase II [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 620

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/555 (14%), Positives = 166/555 (29%), Gaps = 114/555 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K +   YE  K    ++DF+D+I    ++L       ++  K+     +  +DE QDTS 
Sbjct: 164 KEIFHSYESYKASKNLIDFDDMITKAYEILLND---KFVLQKVRSTFKYYQLDEGQDTSF 220

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+ ++  L                LF V D+ Q+IY F GA  + V + +         
Sbjct: 221 AQFRIMELLAH----------PKNNLFVVLDDDQAIYGFRGASVEEVKKFEERIH----- 265

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +I ++  ++RS   I+   +            + +ST   R     +     +  
Sbjct: 266 ----PTIFKMQRNYRSQRHIIDCANTFIEGNRERFDKTIESTLVEREPVYLVKLPTRIDQ 321

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           ++ + S+ D + +       +    L +    + +                         
Sbjct: 322 FKFIKSKLDDKSSAVLYRNNAQVLGLVEYFERNNI------------------------P 357

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              +D  +          I  +  F  +     +     +     +          +I +
Sbjct: 358 FNIRDTKLRFYNNFIFRDILNIIDFSIDPSNYEIF----YSFYYKIKGYISKRQMEYIKN 413

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            + D     +LK P       D                              +  + I +
Sbjct: 414 IQTDNYLEALLKYPDLPSYYKD------------------------------NFYELILD 443

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ--NSYSSLQ 548
              + +  + +     IL          +         ++E   F     Q   +  S +
Sbjct: 444 FKSLKKK-TMYQKIHFILYELNYSDYMKNSCKRMGQ-NIEESREFAYTLMQIAKNVDSYE 501

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           E I  L+     + R  + + + +   T+H+AKGLE   VF++D  S +       +   
Sbjct: 502 EFIGRLKYLD-ELLREPTKSTSSLTFSTMHSAKGLEFDRVFIIDLTSGILPSSRSIERLD 560

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
               ND                              EE  RL YV +TRA ++L + +  
Sbjct: 561 RGIYND-----------------------------YEEERRLFYVALTRAKEELYLIEPG 591

Query: 669 NTSNEKKSNQRTWYD 683
              + K        +
Sbjct: 592 KYLDAKTKESEFMTE 606


>gi|209972997|ref|YP_002300444.1| gp34.33 [Bacillus phage SPO1]
 gi|209871317|gb|ACI91073.1| gp34.33 [Bacillus phage SPO1]
          Length = 978

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/494 (13%), Positives = 146/494 (29%), Gaps = 112/494 (22%)

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           S+YSF GA+P+  +   +          +    I +  ++RS   IL V + +    +  
Sbjct: 567 SMYSFRGAKPEEFIDFTKTY--------KGAQQISMEDNYRSNPHILEVANNLIKNNQKR 618

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                      +  +++      V                          S     S   
Sbjct: 619 L--------PKKLVANKQNDETCV--------------------------SFEVHESEIE 644

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A+++   I   +                KDI +L R    +  +            I  
Sbjct: 645 EAKKVVEEIKLQVEQGGK---------NPKDITILYRTNAQSRALEDYL----IISGIPY 691

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
           V +      +   IKDL+   R +    DD +F  ++ +P     +  + K+   +    
Sbjct: 692 VIHGGTSFYERKEIKDLICYLRLVADSNDDEAFKRVINTPSRYLGKAFMEKV---KRFDG 748

Query: 465 TVYEYIQKFANCG----ISKFQHVIKYIHELIHIAQF-------CSPHDFFTLILGAKKG 513
           + +E I + +              +  + EL  +A+         SP +    +L     
Sbjct: 749 SHWEAITEPSMSWKNYEQKGINEFVDLVEELKSVAEHGAGDFGEGSPTEVIDYLLDNC-Y 807

Query: 514 RQQFISRFGNE----VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
           ++   +   ++     ++ ++       +++     S++  +  +       K       
Sbjct: 808 KKHMSNELTSDDFSSRMENVETLKFVMEQHD-----SIESFLKHISDLMSQAKHDI---- 858

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + V++MT+H +KGLE    F++        H                             
Sbjct: 859 DGVQLMTIHKSKGLEFDTAFVIGVSEGCLPHFRAI------------------------- 893

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
               +     +K   EE  RLLYV +TRA     I        +     R   ++  +  
Sbjct: 894 ----ESYNDGRKQAIEEERRLLYVAITRAESVCHISAPKTFLGKPAPVSRFSKELGIEIL 949

Query: 690 HNDERVKKIKLTNS 703
                   ++  + 
Sbjct: 950 DMSGTDVDLEDADV 963



 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YE+ K + CV+D +D++     L K+      +  +  ++  ++L+DE QD + +
Sbjct: 212 EFYKRYEKKKVEECVIDGDDMLYLLWWLFKQHPD---VLARYQKKFKYLLVDEAQDNNGL 268

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
           Q+E+I+ L                LF VGD+ Q 
Sbjct: 269 QYEIIKML----------GKPENNLFLVGDDDQC 292


>gi|68536699|ref|YP_251404.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
            K411]
 gi|68264298|emb|CAI37786.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
            K411]
          Length = 1104

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 112/1024 (10%), Positives = 273/1024 (26%), Gaps = 133/1024 (12%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            + + ++           Y  V  +       + TG    ++  + L+     +     + 
Sbjct: 95   AASGTFVRSVHSWAFAFYRSVQTLRGQKQPRLITGAEHDMQIREILRG--TEEDGNRYWP 152

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                  L+                 +  L++ L ++ +    +  +       +      
Sbjct: 153  TNVVPALSYAGF-------------AQQLRDLLLRATER--GLSAQQLQQLGVEHDRPMW 197

Query: 128  TLAKYLNAHYEE--AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              A      Y++     ++  L+  +L+  T    +K +    +  +  +++  +L+D+ 
Sbjct: 198  EAAGRFQQEYQQVQRLSRSESLNASELLHATLAAFEKPEGEQLV-EQQREKVKLLLVDDA 256

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
             +       +I S                     GD  Q ++ F GA+   +    +   
Sbjct: 257  HNLDPASARLIESFM----------VPGTRTLIAGDPDQCVFHFRGADEAFLDSYSQD-- 304

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP---ENAQGLSEDSTTTIRHRSSRI 302
                        + L  S R T      V+ +        +   L    +       S  
Sbjct: 305  --------PDHRVVLSASHRLTPPAAQSVNALRRHLGAQPSRVELRSADSGDFTSGGSTG 356

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
             +   V +     ++     +  + +      +    +        IA     ++     
Sbjct: 357  AETVQVTITPTETAERLKIVDVVRRAHIEQQVAWDDIAVIVRGTGSIARVRRTLMAYGVP 416

Query: 363  FSNGKKRVIQAKDILV-LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                   V+ A+  LV ++    +          +++  + SV G D  ++        L
Sbjct: 417  VKVDPTSVVLAEQPLVRMLLLAAEASYRPLTVAEMQSVLEGSVGGADPVMVRRVHRAVAL 476

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK- 480
                  +  Q    +    L++            +    +  E               K 
Sbjct: 477  AIRSAQMAGQVAGQAAGQTLRAHEDGRPFQAADYVTELLNHPEDPANQWITSHCGPREKE 536

Query: 481  -FQHVIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQFISR------FGNEVIDVLDE- 531
              Q V   +       +     +     I  A K      ++       G +    LD  
Sbjct: 537  VIQRVSTVLEAGRQAWKNNQGTEMVLWKIWQATKLDMHLRAQALKGGSLGAQADADLDAV 596

Query: 532  --FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLESP 586
                +      E+N ++ ++  +  L                   V I+  H A G +  
Sbjct: 597  MSLFDILGDFAERNPHAQMESFVENLRAQKVPTGGRDQRGVRAGAVEILPAHAAAGRQWK 656

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VV +       +                     + +       ++    I        EE
Sbjct: 657  VVAIAGVQEGEWPTGPTVG------GLFGQLELVDLLDRGIDPSVPVARINDA----IEE 706

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK--------- 697
              RL  + ++RA+D + +    N+ +E     R   +M  +        +          
Sbjct: 707  ERRLFLLALSRATDSVHVTCVRNSGDEALVPSRFIAEMGVEPTELATADEAEGAEEAETS 766

Query: 698  -----------------------IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                                    +L +++       +E          + R        
Sbjct: 767  VGRKVSGSGAGALPRVLAIDSLLAELRDAVTDPNRPGHERRAAARNLAKMARAGVYGAAP 826

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-------QTFNRGLIIH 787
            ++     +  +  +    +   L+PS +++     L + L  N       +    G+ IH
Sbjct: 827  EDWWGTAEPSTDARVLAGDKIRLSPSKLESWNTCALRAFLDSNGGVSESTEAMRVGIFIH 886

Query: 788  KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
             + + I    E             +    PA +    +      +       A   D   
Sbjct: 887  AIAEQIVQGMELDEAQLAVREILPHVLDGPAWKNTQTVERWEGGVNKLHGFIAGYRDKEF 946

Query: 848  EVSVSGKINCPKK------DIIISGRIDQISIS-QQNIF-IFEYKTHHHVPQEIEHIPYT 899
            E+     +           ++ +SGR D ++ + +  +  + ++KT       +      
Sbjct: 947  ELETERTLRARVGQTPDGVEVTLSGRADLLATNPEDGLTKVIDFKTGKTA---VTKNAAA 1003

Query: 900  HIAQLSIYEKIL---------KDSYPNKSLVCLLIY--VSEPKVFIIPQNKL-NKAFAEI 947
               QLS Y+ +L            Y  +     L+Y       +    Q +L  +  + +
Sbjct: 1004 ESPQLSAYQFLLPLNERSGGSAQKY--RPGGAALVYPGTQTKTITERNQAELTEEQLSGV 1061

Query: 948  STKI 951
              ++
Sbjct: 1062 HDQL 1065


>gi|242241744|ref|ZP_04796189.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus
           epidermidis W23144]
 gi|242234834|gb|EES37145.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus
           epidermidis W23144]
          Length = 433

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 117/366 (31%), Gaps = 55/366 (15%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +    A  +   I                  +  ++ +L R    + ++        
Sbjct: 25  EAMTERDEAEYVVKEIMKHQRGGK----------KYSEMAILYRTNAQSRVLEETF---- 70

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
               I           D   IKDL++  R I +  DD+S   ++  P        + KI 
Sbjct: 71  MKSNIPYTMVGGQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRGIGPSSVEKIQ 130

Query: 458 -TQRHETETVYEYIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                   ++++ + +    G+SK          + I  LI   +F    +    +L   
Sbjct: 131 TYALQNNISMFDALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEISEIVDEVLQKS 190

Query: 512 KGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
             +         E    ++ LDEF++     E+N+    Q LI+ L           +  
Sbjct: 191 GYKDMLDREQSIESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLSLVADIDEADT 250

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            N V +MT+H+AKGLE P+VF++     +F H                            
Sbjct: 251 QNGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIR-------------------------- 284

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                  IK       EE  R+ YV +TRA + L I   +      +S        + + 
Sbjct: 285 ------AIKSEDDHEMEEERRICYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEI 338

Query: 689 FHNDER 694
             +   
Sbjct: 339 PEDLLD 344


>gi|261839700|gb|ACX99465.1| ATP-dependent DNA helicase [Helicobacter pylori 52]
          Length = 671

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 99/689 (14%), Positives = 193/689 (28%), Gaps = 200/689 (29%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ-----DEFIKIRDRFNTYKMFK 121
               +  L Q          +++ +   D K  ++  +          +   +      +
Sbjct: 91  EHYPNLSLKQPKEL------KKLLESIVDTKNAIEDDKKPYTSQHLYALYSLYTNALKQE 144

Query: 122 STLASL-----------TLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWI 169
              A L           T  + +   +E  KKK+  +D+ DL++     +L++       
Sbjct: 145 DFSAWLSSKNPEHTPYATFYENILDEFENTKKKHNYIDYNDLLLLFKQAMLERP------ 198

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                     +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F
Sbjct: 199 -----SPYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAF 241

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
           +GA+   +    +  +           +  L  ++RS+ +IL + ++V    E     + 
Sbjct: 242 NGADISIISNFTQKYKN--------AQVFTLTKNYRSSKEILDLANQVIQRNERIYPKNL 293

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
           +   +                             P   ++                 + I
Sbjct: 294 EVVKSGHFN------------------------KPALLNYNDNI----------AQCQDI 319

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I                    K++ V+ R       +    R     + +       
Sbjct: 320 AKRI--------------VMRKNFKEVAVIFRNNASADQLEAALRS----HNVPSKRKGS 361

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS-------------------- 449
               +   +   + +   I + +D ++ + +L S + +                      
Sbjct: 362 ASFFESKEVALALDICALIFNPKDIMAAIHVL-SHISDIGSNTAKDIHEALMLLGNGDLK 420

Query: 450 ------------------------EDDIFKICTQRHETETVYEYIQKFANCGISKF---- 481
                                    ++IF +         + +           K     
Sbjct: 421 LALTHPNKEVKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNG 480

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNF 535
             ++     L   A   SP      IL      Q F +R   E     D    EF  L  
Sbjct: 481 AKMLSDFFILYTKAPTHSPSALIKHILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQV 539

Query: 536 TLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
             R  +     SSL +    L        I  + +     V +++VH +KGLE   V+++
Sbjct: 540 QKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYII 599

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
           D     F +  +                                         EE  RL 
Sbjct: 600 DLMEGRFPNHKLMNTGGG----------------------------------IEEERRLF 625

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRT 680
           YV +TRA + L +    N   E    +  
Sbjct: 626 YVAITRAKENLWLSYAKNELRENAKPKEH 654


>gi|78224414|ref|YP_386161.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
 gi|78195669|gb|ABB33436.1| UvrD/REP helicase [Geobacter metallireducens GS-15]
          Length = 1075

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/672 (13%), Positives = 170/672 (25%), Gaps = 131/672 (19%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
             +     P      + + +  +L            A T    +  +  E   +       
Sbjct: 475  QVLVAAGPGTGKTYTLVARIAALLARPETVPEHVCAITFTNRAAREVRERLVATAGGAGE 534

Query: 75   TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI-----KIRDRFNTYKMFKSTLASLTL 129
                          + ++ P L    ++S++  +      +  +                
Sbjct: 535  RVFVGTFHRFCLDWLRQEEPGLAVVGEESRERLLKRLFPDLGKKEQGAVADGIADHLHRS 594

Query: 130  ----AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                A      Y E       +D + ++      L + D     R ++   + H+ +DE 
Sbjct: 595  GLDGASESLRRYLEELAGRGAVDLDAVVPLVVRRLAEDDC---FRQRVCGSVEHLFVDEF 651

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QD +  Q+ ++  L  +            T+FA+GD  Q+IY F G++P    R      
Sbjct: 652  QDLNAPQYALVEILAREA-----------TVFAIGDPDQAIYGFRGSDPTFFFRFADH-- 698

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                        + L  ++RS + ++     V +      GL+  +              
Sbjct: 699  -------PGTRRLSLSRNYRSVSPVVEGASAVIARNTLRSGLALVAGAP---------HQ 742

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD----- 360
            G ++L        +                          A  I   I   +G       
Sbjct: 743  GMIELHRAPTPAAE--------------------------AEFIVRRIEEFMGGVSNFSR 776

Query: 361  -TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             +     + R     ++ VL R  +                 I              A++
Sbjct: 777  ISGRGGDQGRGRSFGEMAVLYRLSRQA----EELAGALERRGIPFQLIGSVPYFLGPAVR 832

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCG 477
             +    +      DD+     L   L    E+ + ++      T             +  
Sbjct: 833  AVTRFIQAAA-GSDDIGEWLALLGGLRGIGEESLTRLEEALPLTGDFLPLTAAAGLPSVA 891

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
              +   +   +     +            +    +                +   +    
Sbjct: 892  ARQVAELAAALGRFRDVMSREGIAPAIGPVFPFLEVDA---------GHPDVCRLVALAG 942

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                    +L      L  Y              V +MT+H AKGLE PVVFL      +
Sbjct: 943  SF----GRNLAAFARHLRDYASETLYD--ERAEGVPLMTIHAAKGLEFPVVFLAGCEEGL 996

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                  +                                     +  EE  RL YVGMTR
Sbjct: 997  LPCTLWRD------------------------------------ADLEEERRLFYVGMTR 1020

Query: 658  ASDQLIICKHSN 669
            A + LI+     
Sbjct: 1021 AKEALILTASRE 1032


>gi|302818017|ref|XP_002990683.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii]
 gi|300141605|gb|EFJ08315.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii]
          Length = 1291

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 123/856 (14%), Positives = 250/856 (29%), Gaps = 174/856 (20%)

Query: 8    SLNESYELIYKDLW--PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            +  E  + +   +         +S  + +      +      +K     +       ++R
Sbjct: 309  AATEMMDRVAAVVGKEASKELMISTFHSFCLQLCRSHA----EKLNRTSEFLVYGASQQR 364

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             +++ +  L  + T   +    E+       +E+ KK Q    + +      +  + +  
Sbjct: 365  KAVIEATRLALEATESCDAQKPEV------WRERAKKWQRFVTQAKASGQDSEQIEKSGN 418

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               L   +  HYE        LD+ D I     LL        +  +      ++L+DE 
Sbjct: 419  --HLGADILRHYERILASCNSLDYHDFIGFAVKLLTDHPD---VSAECHNTWAYVLVDEF 473

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QDTS++Q++++R L           S    +  VGD+ QSI+SF+GA        +    
Sbjct: 474  QDTSVMQYKLLRLL-----------SLHGRVTVVGDDDQSIFSFNGANSLGFSTFRNDFP 522

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                        + L  ++RST  I+     V    ++                      
Sbjct: 523  NH--------KEVRLHQNYRSTGCIVEAARCVIQNNDSG--------------------- 553

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                     V + D+    +          + +  +       +   I          S 
Sbjct: 554  -----CSAKVVRTDNDFGEKIV--------VMECRNEEAQCAFVVDEILE------KASM 594

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                     +  +L R++    +     R  K  + +  V   R  +     +KD++AL 
Sbjct: 595  ASDIKPVFANFAILYRRQVTGKIFQSAFRSRKIPFNMHGVAVYRKKV-----VKDVIALL 649

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI----CTQRHETETVYEY------------ 469
               L +   +    + K+       +    +       ++E  +  E             
Sbjct: 650  WTSLGRSGTVFERRVFKALYGGDKTETKKAVEYVEKYGKNENCSFLEAAEIIFTAKVSGT 709

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--------- 520
              +       K    ++ +  L   A+  S     T +L     R+ F SR         
Sbjct: 710  FSRRQLSQGRKVLTTVEMVKRLA--AKEQSLSSLVTAVLNMLPQRRAFESRAIVDESGGK 767

Query: 521  ---FGNEVIDVLDEFLNFTLRN--------EQNSYSS--------LQELISELEQYPPTI 561
                  +   VLD  L+             E+   +S        L++ +  +       
Sbjct: 768  LLNEDEDCRTVLDYLLDDVSEFLCKHIRLQEEVKPNSRQLGCSVLLKDFLDHITVRETEN 827

Query: 562  KR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
             R     NHN V + T+H +KGLE   VF+V                             
Sbjct: 828  FRTRREENHNSVTLTTMHQSKGLEWDSVFIVKANELETP--------------------- 866

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                               + S+ EE  RL YV MTRA  +L I         +      
Sbjct: 867  ----------------LLHESSSLEEERRLFYVAMTRARKKLYIVYIVVNPQRQILQPSR 910

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
            +   +       E    + + + ++++   A   S+    +  +E   TI  +  +    
Sbjct: 911  FLSELPRQHLQFEARGYLTVLDVLDEN---ALTDSSAFLRSFNIEARSTIASIFHQWAKK 967

Query: 741  KKLFSPIKNDIN-----EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                 P +  +      +  + + +  +      L+  L+D+  F     I K  + +  
Sbjct: 968  SAFQDPKRLLMKVGLAIDERLRSKTAKNKDTLHALKRSLTDDAAFAYADQIVKW-EKLPA 1026

Query: 796  LPEHKRKNFITSYCTK 811
                           +
Sbjct: 1027 HERSVHMAERQQQLNR 1042


>gi|208434816|ref|YP_002266482.1| rephelicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori G27]
 gi|208432745|gb|ACI27616.1| rephelicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori G27]
          Length = 675

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 103/703 (14%), Positives = 199/703 (28%), Gaps = 189/703 (26%)

Query: 48  KKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKL 100
           K +  ++  +              +  L Q    +K      +      + K P   + L
Sbjct: 75  KLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNAIDDDKKPYTSQHL 134

Query: 101 KKSQDEFIKIR--DRFNTYKMFKSTLAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                 +      + F+ +   K+        L + +   +E  KKK+  +D+ DL++  
Sbjct: 135 YALYSLYTNALKQEDFSAWLSNKNPEHMPYAALYENILDEFENTKKKHDYIDYNDLLLLF 194

Query: 157 ND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              +L++                 +L DE QDT+ +Q  ++ ++            +P +
Sbjct: 195 KKAMLERP-----------SPYKEVLCDEFQDTNPLQESILDAI------------NPPS 231

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           LF VGD  QSIY+F+GA+   +    +  +           +  L  ++RS+ +IL + +
Sbjct: 232 LFCVGDYDQSIYAFNGADISIISNFTQKYKN--------AQVFTLTKNYRSSKEILDLAN 283

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           +V    E     + +   + +                           P   ++      
Sbjct: 284 QVIQRNERIYPKNLEVVKSGKFN------------------------KPTLLNYNDNI-- 317

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                      + IA  I                    K++ V+ R       +    R 
Sbjct: 318 --------AQCQDIAKRI--------------VMRKNFKEVAVIFRNNASADQLEAALRS 355

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS------ 449
               Y +           +   +   + +   I + +D ++ + +L S + +        
Sbjct: 356 ----YNVPSKRKGSASFFESKEVALALDICALIFNPKDIMAAIHIL-SYISDIGSNTAKD 410

Query: 450 --------------------------------------EDDIFKICTQRHETETVYEYIQ 471
                                                  ++IF +         + +   
Sbjct: 411 IHEALMLLGNGDLKLALTHPSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVMDKAFH 470

Query: 472 KFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
                   K        +     L   A   SP      IL      Q F +R   E   
Sbjct: 471 SHPVLMHPKISLNGAKTLSDFFILYTKAPTHSPSALIKHILE-SAFFQTFKTRLLKERSK 529

Query: 528 VLD----EF--LNFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTV 577
             D    EF  L    R  +     SSL +    L        I  + +     V +++V
Sbjct: 530 NKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSV 589

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE   V+++D     F +  +                                  
Sbjct: 590 HASKGLEFKDVYIIDLMEGRFPNHKLMNTGGG---------------------------- 621

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                  EE  RL YV +TRA + L +    N   E    +  
Sbjct: 622 ------IEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEH 658


>gi|330901566|gb|EGH32985.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 784

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/541 (13%), Positives = 168/541 (31%), Gaps = 53/541 (9%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
           + L   +     E          LT +   +       ++           ++  +    
Sbjct: 272 EKLAAWAADDTQEALDLGTGFTRLTPEGIAEAWKSEPPVHPAF--------EAMAQLKAA 323

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 324 LDGLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HGAGGERLA 378

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 379 TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEANDEQTGLFLIGDPKQAIYAFR 433

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+    L  ++                 L  ++RS+  ++  V+ VF+  E  +     
Sbjct: 434 GADIYTYLLARQA---------TDGRWHTLDTNYRSSHAMVESVNHVFTRAEQREQGRGA 484

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                 H +         Q  ++ +    +               +        LA   A
Sbjct: 485 FLFRDEHGNQVPFSDALAQGRKETLHVDGTPLTALTVWHLQSDQPVYGVVYRQQLAASCA 544

Query: 351 YTISNMIGTDTIFSNGKK------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             I  ++      S G        R ++  DI +LVR  K+   +             SV
Sbjct: 545 SEIVRLLNAGQQGSAGFVTPDNTLRGLRPADIAILVRDGKEAQAVRQQLTA---RGVRSV 601

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +D+  +       D+++  +     + + +    L     +    ++ ++        
Sbjct: 602 YLSDKDSVFAAQEAHDMLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD----- 656

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
              E   +        ++ + +    L  + +          ++    G +   +     
Sbjct: 657 ---ELAWERRVMQFRGYRAIWRSQGVLPMLRRLLHDFALPQTLMTRNDGERVLTNLL--- 710

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAK 581
               L E L           + ++ L   L               ++   V+++T+H +K
Sbjct: 711 ---HLSELLQQAAAELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSK 767

Query: 582 G 582
           G
Sbjct: 768 G 768


>gi|325963965|ref|YP_004241871.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470052|gb|ADX73737.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 711

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 94/681 (13%), Positives = 194/681 (28%), Gaps = 162/681 (23%)

Query: 2   KNRFGLSLN-ESYELIYKDLW--PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
           +  +G+     + + +    +         S +    + +++    T    A    Q   
Sbjct: 52  RIAYGVHSGVYTPQRLLAVTFTARAAAEMRSRLRDLGAGNVQ--ARTFHAAALRQLQFFW 109

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            Q +      L            + +          DL  +++ ++   +   +     +
Sbjct: 110 PQAVGGTLPQLLDHKAQLLAEAARRLRLSTDRASIRDLASEIEWAKVSMLTPANYLENAQ 169

Query: 119 MFKSTLAS-LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              +     LT    +   YE+ K    V+DFED+++ T  +L++ +    +   + ++ 
Sbjct: 170 GRGAPGGFDLTAVARVFQSYEDVKTDRNVIDFEDVLLITVGILQEDE---KVAATVREQY 226

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            H ++DE QD S +Q  ++                   L  VGD  Q+IYSF GA PK +
Sbjct: 227 RHFVVDEYQDVSPLQQRLLELWLG----------GRDELCVVGDASQTIYSFTGASPKHL 276

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF-SIPENAQGLSEDSTTTIR 296
           L  K    +         ++++L   +RST  ++ + + +  +               ++
Sbjct: 277 LEFKARYPQ--------ANVVKLIRDYRSTPQVVKLANDLLGARRSGGPAADAAWAAPLQ 328

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             + R                                    + +     A  +A  I  +
Sbjct: 329 LVAQRPAGPAP---------------------------QFTECADDEAEAATVAQKIKAL 361

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +   T           A ++ VL R    +               I              
Sbjct: 362 LDAGTP----------ASEVAVLFRTNGQSEAYEQALAA----AGIGYQLRGGERFFARK 407

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            ++D +   R       +         PL     D +  +                 A  
Sbjct: 408 EVRDAILQLRAATRAVAETDAPE----PLGQLVRDIVSSLGY------------TDSAPH 451

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                +   + +  L+ +A                                  DE +   
Sbjct: 452 SGGALRERWESLAALVALA----------------------------------DELVKT- 476

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               + S   L + ++EL++               V + ++H AKGLE   VFLV     
Sbjct: 477 ----RGSGFGLADFVNELQERSLAQHAPTVQG---VTLASLHAAKGLEWDAVFLVGLSEG 529

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +                                     +       + +E  RLLYVG+T
Sbjct: 530 LMP-----------------------------------ISFADSPESVDEERRLLYVGIT 554

Query: 657 RASDQLIICKHSNTSNEKKSN 677
           RA + L +   +  +   ++N
Sbjct: 555 RAREHLHLSWSTARTPGGRAN 575


>gi|317011121|gb|ADU84868.1| ATP-dependent DNA helicase [Helicobacter pylori SouthAfrica7]
          Length = 672

 Score =  175 bits (442), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 100/691 (14%), Positives = 205/691 (29%), Gaps = 120/691 (17%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQK- 82
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASSEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKL 111

Query: 83  -----NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF----KSTLASLTLAKYL 133
                +      + K P   + L      +     + +                T  + +
Sbjct: 112 LESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYATFYENI 171

Query: 134 NAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              +E  KKK+  +D+ DL++     +L+                  +L DE QDT+ +Q
Sbjct: 172 LEEFENTKKKHNYIDYNDLLLLFKKAMLETP-----------SPYKEVLCDEFQDTNPLQ 220

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +       
Sbjct: 221 ESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN------ 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH-RSSRIGQVGTVQLW 311
               +  L  ++RS+ +IL + ++V    +     + +   +    + + +     +   
Sbjct: 263 --ARVFTLTKNYRSSKEILDLANQVIQHNQRIYPKNLEVVKSGDFNKPTLLNYNDNIAQC 320

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +  +   + + ++ +     ++   +  A++ A  +           +      K V 
Sbjct: 321 QDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRANNVPSK-----RKGSASFFESKEVA 375

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A DI  LV   KD   I      L     I                KD+      + + 
Sbjct: 376 LALDICTLVFNPKD---IMAAIHVLSYANDI-----------GSNTAKDIHEALMLLGNG 421

Query: 432 EDDLS-----FVCMLKSPLFNFS----EDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
           +   +         + +     +     ++IF +         + +           K  
Sbjct: 422 DLKSALTHPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVISKAFYSHPVLMHPKIS 481

Query: 483 -HVIKYIHELIHIAQFCS--PHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF--L 533
            +  K + +   +       P       +      Q   +R   E     D    EF  L
Sbjct: 482 LNGAKMLSDFFTLYTHAPNSPSALIKHTIE-SAFFQTIKTRLLKERSKNKDGSYNEFKKL 540

Query: 534 NFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
               R  +     SSL +   +L        I    +     V +++VH +KGLE   V+
Sbjct: 541 QAQKRFNEKMELLSSLAKNYQDLGRFLNGTLIGSNEATQGEGVNLLSVHASKGLEFKDVY 600

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           ++D     F +  +                                         EE  R
Sbjct: 601 IIDLMEGRFPNHKLMNTGGG----------------------------------IEEERR 626

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
           L YV +TRA + L +    N   E    +  
Sbjct: 627 LFYVAITRAKENLWLSYAKNELRENAKPKEH 657


>gi|224418438|ref|ZP_03656444.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491]
 gi|253827754|ref|ZP_04870639.1| putative helicase [Helicobacter canadensis MIT 98-5491]
 gi|313141969|ref|ZP_07804162.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491]
 gi|253511160|gb|EES89819.1| putative helicase [Helicobacter canadensis MIT 98-5491]
 gi|313131000|gb|EFR48617.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491]
          Length = 674

 Score =  175 bits (442), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 101/738 (13%), Positives = 205/738 (27%), Gaps = 188/738 (25%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPT-ILKKAQTLQQASQTQCIEERFSLLSSFFL 74
           +   + P     ++  NK     ++        +  + ++  +            +S  L
Sbjct: 43  LESGILPNEILLLTFTNKAAQEMLKRLELRFDSRIVKQIEAGTFHAVAYRYLKNKNSIIL 102

Query: 75  TQKFTPQ---KNIITQEINKKSPD--------LKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            Q    +   K++  + I              L +     Q+                  
Sbjct: 103 KQPRELKVLFKSLYDKRIFTHISQTPPYGANYLYDTFSLFQNATTSDDFLTWLQNRNSEQ 162

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   +   ++  KK+    D+ DL+     L  K ++          +   IL+D
Sbjct: 163 APYAEIYLDVWEEFKGLKKEYHYADYNDLL-----LFYKEEILKDKL-----QFKEILVD 212

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ +Q  ++++L            +P ++F VGD  QSIY+F+GA+   +   K  
Sbjct: 213 EYQDTNPLQDSILQTL------------NPPSIFCVGDYDQSIYAFNGADISIIGSFKDR 260

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       +I  L  ++RSTA IL + ++V          + +   T         
Sbjct: 261 YPN--------GNIYSLTKNYRSTAPILNLANRVIEKNPRIYPKTLEVVKTQNF------ 306

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
             G   L                                 +  + IA  I          
Sbjct: 307 --GMPTLLVY--------------------------DELFLQYQGIANKIK--------- 329

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                R  +  D+ V+ R       I    R       I           D   +  ++ 
Sbjct: 330 --LSNRPFR--DVAVIFRNNSSADGIEASLRE----IGIPTRRKGGISFFDSKEVAYILN 381

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------------------------ 459
           L   + + +D +SF+ +L S            I                           
Sbjct: 382 LCSLLYNPKDMMSFIHVL-SHAKGIGNAMAKDIYEALLVLGEGNAIKGLLKPDQMIKEPY 440

Query: 460 --RHETETVYEYIQKFANCGISKF----------------------QHVIKYIHELI-HI 494
               +   +  + + FA   I +F                         +  ++      
Sbjct: 441 KKIVQNTQLGLFDEFFAMGNIERFSYLESDFKHNSILSHPKLTKEGAEFLDSLYLFFGSF 500

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEV------IDVLDEFLNFTLRNEQNSY--SS 546
                P    + I+      ++   +   E           +++     R E+  +    
Sbjct: 501 GVNDKPAFLISQII-RLPIFKKVAQKLAKERSITKDGRINEEKYQESLERIERKIFLLRD 559

Query: 547 LQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           L     E+        +  +  +    V ++++H +KGLE   V++VD     F +K   
Sbjct: 560 LASHYQEIGRFLNAMMLGSSEMSEGEGVNLLSIHASKGLEFSEVYIVDLMEGRFPNK--- 616

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                              +  + EE  RL YV +TRA + L +
Sbjct: 617 -------------------------------KLMSQSGSLEEERRLFYVAVTRAKENLYL 645

Query: 665 CKHSNTSNEKKSNQRTWY 682
                   +  + + + +
Sbjct: 646 SYARKDVMKNIAYEGSIF 663


>gi|109947811|ref|YP_665039.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
 gi|109715032|emb|CAK00040.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba]
          Length = 672

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 98/691 (14%), Positives = 204/691 (29%), Gaps = 120/691 (17%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQK- 82
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASSEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKL 111

Query: 83  -----NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF----KSTLASLTLAKYL 133
                +      + K P   + L      +     + +                T  + +
Sbjct: 112 LESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYATFYENI 171

Query: 134 NAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              +E  KKK+  +D+ DL++     +L+                  +L DE QDT+ +Q
Sbjct: 172 LEEFENTKKKHNYIDYNDLLLLFKKAMLETP-----------SPYKEVLCDEFQDTNPLQ 220

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +       
Sbjct: 221 ESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN------ 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH-RSSRIGQVGTVQLW 311
               +  L  ++RS+ +IL + ++V    +     + +   +    + + +     +   
Sbjct: 263 --AQVFTLTKNYRSSKEILDLANQVIQHNKRLYPKNLEVVKSGDFNKPTLLNYNDNITQC 320

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +  +   + N ++ +     ++   +  A++ A  +           +      K V 
Sbjct: 321 QDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRAHNVPSK-----RKGSASFFESKEVA 375

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A DI  LV   KD      +                          KD+      + + 
Sbjct: 376 LALDICTLVFNPKDIMAAIHVL--------------SYVNDIGSNTAKDIHEALMLLGNG 421

Query: 432 EDDLS-----FVCMLKSPLFNFS----EDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
           +  L+         + +     +     ++IF +         + +           K  
Sbjct: 422 DLKLALTHPNQEAKIYTKKKEITSMGLFEEIFALENSSRFNGVIAKAFHSHPVLMHPKIS 481

Query: 483 -HVIKYIHELIHIAQFCS--PHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF--L 533
            +  K + +   +       P       +      Q   +R   E     D    EF  L
Sbjct: 482 LNGAKMLSDFFTLYTHAPNSPSALIKHTIE-SAFFQTIKTRLLKERSKNKDGSYNEFKKL 540

Query: 534 NFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
               R  +      SL +   +L        I  + +     V +++VH +KGLE   V+
Sbjct: 541 QVQKRFNEKMELLGSLAKNYQDLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVY 600

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           ++D     F +  +                                         EE  R
Sbjct: 601 IIDLMEGRFPNHKLMNTGGG----------------------------------IEEERR 626

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
           L YV +TRA + L +    N   E    +  
Sbjct: 627 LFYVAITRAKENLWLSYAKNELRENAKPKEH 657


>gi|226323304|ref|ZP_03798822.1| hypothetical protein COPCOM_01076 [Coprococcus comes ATCC 27758]
 gi|225208494|gb|EEG90848.1| hypothetical protein COPCOM_01076 [Coprococcus comes ATCC 27758]
          Length = 347

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 117/337 (34%), Gaps = 41/337 (12%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  W +    V+  N             + ++   +            
Sbjct: 27  GAGSGKTRVLTHRIAWLIDQIGVNPWNILAITFTNKAAGEMRERVDQIVGFGSESIWVST 86

Query: 66  FSLLSSFFL------------------TQKFTPQKNIIT-QEINKKSPDLKEKLKKSQDE 106
           F  +    L                    + T  K++    +I+ K    +  L      
Sbjct: 87  FHSMCVRILRRYIDRLGYDTNFTIYDADDQKTLIKDVCKYLQIDTKMFKERSLLSAISSA 146

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             ++          +   A   +A+ +   YE+  K N  LDF+DL++ T  LL+ +   
Sbjct: 147 KDELVTPEEMTLRAEGDWAKKKIAQ-VYTEYEKQLKANNALDFDDLLLKTVQLLQTQPD- 204

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +     +   +I++DE QDT+ +Q++++  L   +          + L  VGD+ QSI
Sbjct: 205 --VLEYYQERFRYIMVDEYQDTNTVQFKLVSLLAGKY----------QNLCVVGDDDQSI 252

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F GA    +L  ++              +I+L  ++RST+ IL   ++V       + 
Sbjct: 253 YKFRGANIMNILNFEKEYPN--------AKVIKLEQNYRSTSTILNAANEVIRHNTGRKE 304

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            S  +      +             + +VS    + N
Sbjct: 305 KSLWTENGEGEKIQFRQFDSAYDEADYIVSDIKDKVN 341


>gi|317125679|ref|YP_004099791.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
 gi|315589767|gb|ADU49064.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043]
          Length = 1053

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 102/1000 (10%), Positives = 264/1000 (26%), Gaps = 132/1000 (13%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
             R   +  +S    ++ L        + +       +  G          L   +     
Sbjct: 82   ARLAGTSTQSLARTWQALGFGILRAEAALRGDPPPRLLNGPEQDAILRDLLAGHASGDAP 141

Query: 63   EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
               +            + +  + T+       +L++ L ++ +      D          
Sbjct: 142  GPAWPE----------SVRDALATRGFRN---ELRDLLMRAVEHGQGPEDVLRLGVEHDR 188

Query: 123  TLASLTLAKYLNAHYEE--AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                   A  +   Y+E  A  ++   D   ++ +  DLL+    +     ++ + +  +
Sbjct: 189  PE--WVAAAQVLREYDEVTALSRHGAYDPAWVLTSAADLLEDDPSA---LARLHERLRLV 243

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++D+ Q+ +     ++R ++               +  +GD   ++ +F GA+P+ +   
Sbjct: 244  VVDDAQEMTSAAARLLRVVSR----------GGLRIVLLGDPDSAVQTFRGADPRFLAHG 293

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                             + L +  R  A +  V  +V        G  + S      R++
Sbjct: 294  WESLGVSRPG-AVPRETVVLSVGHRLPAPVADVASRVVRRIGALGGGEQRSVQPAPGRAT 352

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                       S       +      + L   + +T   ++   
Sbjct: 353  --------------------VDVALLRSVAQETSHIASVLRRAHLVEGVPWTEMAVVVRG 392

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +  +   +R +    + V     +         R L      +V             + D
Sbjct: 393  SGRAATLRRALAQAGVPVGAATAETPVRDENAVRPLLTLLGEAVRIARG-----PRHVLD 447

Query: 421  LMALGRFILSQ-----------EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
             + +   +LS               +     L       S++ + ++         + E 
Sbjct: 448  PVTVTDLVLSPIGGSDTVGLRRLRRVLRREELADGGGRSSDELLAELVRNPLWAGRLGEV 507

Query: 470  IQKFANCGISKFQHVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-- 523
             +  A    +    V   +              S         G     ++     G   
Sbjct: 508  GRPAARVAGALAAGVEAALVGADGRWGAGVTAESVLWAIWQGAGVADAWRRQALAGGPGA 567

Query: 524  -EVIDVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMT 576
                  LD      +      ++   +   + +  +                  +V ++T
Sbjct: 568  ERADRDLDAVLGLFDAARAFVDRLPSAGPDKFVEHILGQDVPGDTLLVGGQTGAQVSLVT 627

Query: 577  VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
              +A G E  +V +      V+    ++   +      D                     
Sbjct: 628  PQSAAGREWRLVVVAGVQEGVWPDLRLRGSILGSEDLVD------------VVGQRPVGF 675

Query: 637  KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            +  + + + +  RL +V +TR++++L++    N   +                 ++ R  
Sbjct: 676  RAAQAAVRYDETRLFHVAVTRSTERLLVTAVGNEDEQPSVYLDLVDPPEGGRLADEVRPH 735

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETI-----------KQLMDEQKIPKKLFS 745
                                  P+    E    +                   +      
Sbjct: 736  TEVSRPMSLPGLVGELRREVVSPDPGVAEPALALLAAAAAADVRGADPGRWWALRDVTTD 795

Query: 746  PIKNDINEPYILNPSTIDTKGKTNLESLLS-------DNQTFNRGLIIHKLLQVIFTLPE 798
                   EP  ++PS +    +  L   L+            + G ++H ++        
Sbjct: 796  QPVRREGEPVHVSPSKVTYFSECGLRWFLTSVGGDGPSLGAASVGTLVHDIVAERPHATR 855

Query: 799  HKRKNFITS---YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE---VSVS 852
             +    + +              +  +     ++R +               E   V + 
Sbjct: 856  EELVAEVDARWGRLGLRRGWVTERTRREAHDMVSRYVA-------YRESVAREWEPVGIE 908

Query: 853  GKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
             +        +++GR+D+I    Q  + I + KT    P + E        QL  Y+  +
Sbjct: 909  TEFRVTVGRAVVAGRVDRIERDRQGRLRIVDLKTGTSKPTQAELAQ---HGQLGAYQVAV 965

Query: 912  KDS----YPNKSLVCLLIYVSEPKVFIIPQNKLNK-AFAE 946
                      +S    L+++ +  +  +    L++ A A+
Sbjct: 966  ASQGFPTLGAESAGAALVFIGKGGLSGLRPAVLSQPALAD 1005


>gi|160937050|ref|ZP_02084413.1| hypothetical protein CLOBOL_01939 [Clostridium bolteae ATCC BAA-613]
 gi|158439951|gb|EDP17699.1| hypothetical protein CLOBOL_01939 [Clostridium bolteae ATCC BAA-613]
          Length = 1094

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 105/550 (19%), Positives = 175/550 (31%), Gaps = 147/550 (26%)

Query: 129  LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            L +     Y++A +   ++DF+DL++N   LL++   + +      Q  +++L+DE QD 
Sbjct: 655  LTQEGADRYQQALECRKLMDFDDLLLNMLRLLEQEQKAEY----RKQHFSYLLVDEFQDI 710

Query: 189  SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            S +Q+ +I++           +   R LF +GD  QSIY F G++ +     ++      
Sbjct: 711  SPVQYRLIKAW----------NKGGRELFVIGDPDQSIYGFRGSDSRCFDLLEQDFP--- 757

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   S I L   +RST +IL+    + S                R  S+     G V
Sbjct: 758  -----GTSTIRLTTGYRSTPEILSASLPLISRNPG----------GERSLSAARPHGGPV 802

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            +L     S  +S                            IA  I+ M+G   +     +
Sbjct: 803  RLVTAQTSLSES--------------------------IFIAKEINRMVGGIDMLDAHSQ 836

Query: 369  RV------IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                        DI VL R      L+    +       I  V   R    DH A++  +
Sbjct: 837  TPGLLDTARSFADIAVLYRTNHQARLLEQCLQ----KEGIPYVVAGREDYLDHPAVQGTI 892

Query: 423  ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            +    +L                                ++  + E   K     IS   
Sbjct: 893  SFFGALL--------------------------------KSSGLDEDTTKLCRKRISPSA 920

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                     +   +   P                +IS  G      +D F+   +     
Sbjct: 921  DYSSLAERFLPRLKRDRPWKLL----------ADWISCLGLGSDKSMDTFV--CMSYFHK 968

Query: 543  SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            +   +   ++  + +        S   + V +MT+H +KGLE PVVFL      +   K 
Sbjct: 969  TMEDMLSTLAFGQAHDLKRSGQDSRPSDAVTLMTLHASKGLEFPVVFLYGLRQGILPLKT 1028

Query: 603  IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
             K                                        EE  RL+YVGMTRA D+L
Sbjct: 1029 GKG-----------------------------------AVNPEEERRLMYVGMTRARDEL 1053

Query: 663  IICKHSNTSN 672
            I+      S 
Sbjct: 1054 ILTTSEEPSP 1063


>gi|154175325|ref|YP_001408248.1| acyl carrier protein [Campylobacter curvus 525.92]
 gi|112802789|gb|EAU00133.1| acyl carrier protein [Campylobacter curvus 525.92]
          Length = 677

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 107/668 (16%), Positives = 208/668 (31%), Gaps = 114/668 (17%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95
           SL  E G   +LK+   L+   ++     +F  LS         P               
Sbjct: 92  SLLKELGKGVVLKQPSELKILLKSLVERRKFHHLSDV------KPYGGAY---------- 135

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L +     Q+    +          +       + + +   +E  K K    DF DL+I 
Sbjct: 136 LYDLYSLYQNSVSDVSFADWLKLKSEEQGVYAEIYEDILNEFESEKAKFGYADFNDLLIK 195

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
             D LK                + ILIDE QDT+ +Q  +I +               ++
Sbjct: 196 MRDELKNGAPLD---------YDEILIDEYQDTNTLQGSLISAF------------KTKS 234

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           LF VGD  QSIY+F+GA  + +   K           +  +I  L +++RS++ IL + +
Sbjct: 235 LFCVGDFDQSIYAFNGANIEIIGSFKDRF--------KDANIYALNVNYRSSSSILALAN 286

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           KV +            +   + ++     +   +L+EQ  +  D                
Sbjct: 287 KVIANNPRLYEKHLSVSREGKFKA--PTLLVYNELFEQYSAIADIISLSPFSRENIAVIF 344

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
               S+  I        IS+       F   ++       + + +  +     I      
Sbjct: 345 RNNSSADGIEVALKERCISSKRKGGVSFFESREIKALVDIMGIFINPKDIMAFIHICEYA 404

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-FNFSEDDIF 454
                   V       + D L       L   +L+ ++++S   + +        +D   
Sbjct: 405 KG------VGSALSKEIFDALVKLGHGNLIEGLLNPDENVSIASIKRHNYQLGLFDDLDE 458

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQ--------HVIKYIHELIHIAQFCSP------ 500
                R +     +         + K           +  ++     +A+  S       
Sbjct: 459 FADVSRFKELKFSDRFLAHPILKMQKLSEGGALFLYEIYNFLKSARRLARPNSLINEIRE 518

Query: 501 HDFFTLILGAKKGRQQFISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
              + LI+     ++  +           E  + +    +  L     +Y+ +++  + +
Sbjct: 519 SKIYELIVENLSTKRATLKNGNVDPVIKGEARERIMR-KSIVLSELSKNYNDVEKFYNFI 577

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 +     +    V +++VH +KGLE   VF+VD     F +              
Sbjct: 578 TLGSNEM-----SEGEGVSLLSVHASKGLEFDQVFIVDLAQNRFPN-------------- 618

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                               L       + EE  RL YV +TRA D+L +        +K
Sbjct: 619 --------------------LKLMSMGGSLEEERRLFYVAVTRARDELYLSYAKFDKIKK 658

Query: 675 KSNQRTWY 682
            + Q + +
Sbjct: 659 ITYQPSCF 666


>gi|291458664|ref|ZP_06598054.1| ATP-dependent DNA helicase PcrA [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291419197|gb|EFE92916.1| ATP-dependent DNA helicase PcrA [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 637

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 99/559 (17%), Positives = 171/559 (30%), Gaps = 123/559 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   Y EA ++   LDF+D+I+ T  LL++   S        +   +IL+DE QD S 
Sbjct: 195 ERLYRSYREAMEREQKLDFDDMILRTLSLLRREGES---LSFWQRRFRYILLDEFQDISE 251

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E++R L              R LF VGDE QSIYSF GA PK + R           
Sbjct: 252 AQYELLRLL----------GEPERNLFFVGDEDQSIYSFRGASPKIMQRFLSDYP----- 296

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                S   LP ++R+  +++ +  ++             +           G  G   L
Sbjct: 297 ---DASRYLLPENYRARRELVRLSHRLIENNRLRFAKKLRAMLP-------GGGKGREYL 346

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           +                                   R ++  +S  +             
Sbjct: 347 FP----------------------------DTEREYRFLSELLSKELSEG---------- 368

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL-TDHLAIKDLMALGRFIL 429
           +   +I VL R R    L+            I     +R      HL  +DL A  R  L
Sbjct: 369 LPGSEIAVLYRTR----LVLTSLIPFLLRRGIPFSLGERTEDPFSHLVTEDLSAYLRLSL 424

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
            +      + +L  P    S + + +  +   E  + Y            K +  I+ + 
Sbjct: 425 RRGSRADLLRILNRPPRFLSGEALREEGSGLPELLSYY--------KEKPKARERIRELR 476

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFI---SRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
             +              I          +    R      ++L           +     
Sbjct: 477 TDLQRIAALPTEAALLYIRKKMGYEDWLLGKGQRDPAPFSEILGMLSGRAEDFPEK---- 532

Query: 547 LQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            ++ +  L +    ++ A        +R+M+ H+AKGLE  +V L+D    +        
Sbjct: 533 -EDFLRFLREGREELRAACRGKEGERIRLMSYHSAKGLEFEIVHLIDVVEGIVPS----- 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                          +   +   EE  R  YV +TRA  ++ I 
Sbjct: 587 ------------------------------RRADGREGLEEERRCFYVALTRAKREVHIY 616

Query: 666 KHSNTSNEKKSNQRTWYDM 684
                 +      R   ++
Sbjct: 617 VTKERYSRSVRPSRFLEEL 635


>gi|301165619|emb|CBW25190.1| putative helicase/endonuclease [Bacteriovorax marinus SJ]
          Length = 1106

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 145/899 (16%), Positives = 279/899 (31%), Gaps = 126/899 (14%)

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
            LT      K    ++      + +  +KK  ++ ++  +     ++ K   +   +  Y+
Sbjct: 277  LTAPGKKIKTPDLEDHFNLVKEYRTFIKKYSEDIMESLNSRE-GELKKWWDSIFLIFNYI 335

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              HY +       + F DL    +  L+ ++    I         + ++DE QDTS IQ+
Sbjct: 336  EDHYRDI----PGVTFSDLEYYVSLSLEDKENRESIA----SNYKYFIVDEFQDTSEIQF 387

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            E++ ++ +  F           LF VGD KQ+IY F G E                    
Sbjct: 388  EMLSNIIDGDF---------NKLFTVGDMKQAIYGFRGGELGVFKECMDKTP-------- 430

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              + ++L  ++RS A I+   + VF        +  +      H      Q    +   +
Sbjct: 431  --TTLKLSNNYRSKAGIIDFNNYVFDYL---FKVGLNFEGVDSHSVPVDYQKFPFERDSE 485

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
               +  S     +E +         + S    +  I   I +++ +              
Sbjct: 486  NFGKIISTKFDVKEFYKDDEKPKSDDFSIFESSIFI-DQIKDILDS------------TD 532

Query: 374  KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            ++I +L +    +               I      +  L +   +    +L  ++LS  D
Sbjct: 533  ENICILYKNLSPS----KYLINELIKEDIGFTAQVKVPLGEDPILSIFRSLIDYLLSSRD 588

Query: 434  DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
             +S    L +  F            +    E+                    + I  L  
Sbjct: 589  RVS----LNNLEFYLGGFFSLLGIARTQSLESF--------------ILQFCEDIKTLGV 630

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
               F        ++        Q +        D + EF+   L      YSS++  I  
Sbjct: 631  YNSFLKFCHAVGVLNSNHTNNGQIVKELCEMCGDSI-EFIQVKL----LGYSSIRYSIDF 685

Query: 554  LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                       +  +   V+IMT H +KGLE   VFL         H             
Sbjct: 686  ----------EYGKDSKRVQIMTAHASKGLEFENVFLGGIH--NNGHTVPDLNFFGKLPW 733

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                      +S     I+       KK    E  RL YV  TRA   L     S     
Sbjct: 734  SFKWKKSSRQKSGYSTPILIYENLLNKKKGFAESKRLFYVAATRAQKNLYWADLSFDGKP 793

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
             +S++ +W   +      D   K   +    ++   +            PL   +++   
Sbjct: 794  LESSKNSWICGLRKWQEEDLINKIDFMEAIKSEQRSLEELDVQFVKLKAPLFHMDSLGIS 853

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNP----------------STIDTKGKTNLESLLSDN 777
                +  ++L    +  +     L+                    +  GK ++ S +  +
Sbjct: 854  SPSVESVRELGVISELSVTRLATLSQCPRKFYLLNVCKFNEEDVNEITGKDSVFSGVKKS 913

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
            ++   G +I         +   +R   I    +   K         +   + R L +   
Sbjct: 914  ESIEEGGVI---------VSSAQRGTEIHEALSFAIKRNWIAPASFIDRGVKRDLNS--F 962

Query: 838  TTAMSCDSYSEVSV----SGKINCPKKDIIISGRIDQISISQQ---NIFIFEYKTHHHVP 890
              A+S     EV         I  P    +ISG  D + I       + I+++KT     
Sbjct: 963  NWAVSKLKEKEVDFKFVSEEMIKFPFFGQMISGTPDLVLIPNDSGKGLEIWDFKTG--NR 1020

Query: 891  QEIEHIPYTHIAQLSIYEKILKDSYP---NKSLVCLLIYVSEPKVFIIP--QNKLNKAF 944
            +E + +P  +  QL  Y    +  YP   ++S+  +L +V   +   I    ++L ++ 
Sbjct: 1021 EESKEVP--YWFQLKSYAYAYQTLYPEYKDQSVKLVLSFVDMGENVEIDISHSQLKESL 1077


>gi|224534483|ref|ZP_03675059.1| exodeoxyribonuclease V, beta subunit [Borrelia spielmanii A14S]
 gi|224514160|gb|EEF84478.1| exodeoxyribonuclease V, beta subunit [Borrelia spielmanii A14S]
          Length = 1173

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 133/845 (15%), Positives = 256/845 (30%), Gaps = 106/845 (12%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKKLEKIIKSTSTIDQNYIISNLKNCLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SL Q E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLTQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE-DSTTTIRHRSSRIGQV 305
               N     + I L  + RS+  ++  ++++F    N   + + +        +++    
Sbjct: 416  EIKNKINTDARIVLKTNHRSSKKLIRPLNRIFDNIYNNTIVDDIEKIEFTNSLANQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++   TI  N
Sbjct: 476  NNIFI----------NGQEIEGINIITTNAENEEDIYQKTA----LTIKYLLTYGTINEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQDKFLKTKEFSEIFYIL 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQH 483
            + +  +++  S   +L S + N   D    +  Q      E   E I            +
Sbjct: 577  KCLDRKQNFKSLNYILNSKILNVPWDLQRILIKQDKIHILEEFIENITALLEKNEITLIN 636

Query: 484  VIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV---IDVLDEFLNFT 536
             I  I    +  I IA   +              +   I     E     + + E ++  
Sbjct: 637  AINKIALETNLWIKIANSTNDQKIIKWAENKINYKGLLIKEGKLENLKTYETVLEIISKI 696

Query: 537  LRNEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVRIMTVHTAKGLESPVVFLV 591
               EQ +  SL   +  L       +        + ++  + ++T+H +KGL   +VFL+
Sbjct: 697  YHKEQ-NIQSLISTLENLIINEEPEEIEERVNNINNDNESIELLTIHKSKGLSMNIVFLI 755

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            +T     S+   KK        +      +          + +  K+ +     E   + 
Sbjct: 756  NTSPIENSNIFSKKNCFYKFYQNGKIEHDFFK--------LEENKKYARLKILSEEKNIF 807

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YVG TRA   L I K ++ +++     + +         N       K  N    +  I 
Sbjct: 808  YVGATRAKFALFITKTNSITSKLLEMAKIFTIDDIKHDFNIHEFINQKKFNKKKNNTNIN 867

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
             +     P    + ++E                     D         +           
Sbjct: 868  TKLIPPKPIIKNMFKKEYTSSFSSLTAQAHHTTFYENYDFKNTNYEKETDFTDFDDYEPT 927

Query: 772  SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA---------KEYK 822
               +  +  + G I+H  ++ I         +       K  +             +   
Sbjct: 928  LEETLPKGKDSGNILHAAMEEIIFSTAKDTFDNFKKINIKIIEKQIQKINSNLNTIEIQN 987

Query: 823  NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGK------------------INCP 858
            +L   I  +L       N  +      +   E+    K                   +  
Sbjct: 988  SLTKMIYNILTYNIKAINARLCDI--EELQKEMEFLIKINPKFQKQKNLFDDHFEAFHIK 1045

Query: 859  KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYEK 909
              D  + G +D I  +   I+I +YKT++      ++             +  Q  IY  
Sbjct: 1046 LNDGYLKGIVDLIFKANNKIYILDYKTNYLGKDADDYNITNLENIIKKEYYDLQYKIYAL 1105

Query: 910  ILKDS 914
             +K  
Sbjct: 1106 GIKKI 1110


>gi|261749252|ref|YP_003256937.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
 gi|261497344|gb|ACX83794.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str.
           BPLAN]
          Length = 855

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 103/593 (17%), Positives = 197/593 (33%), Gaps = 78/593 (13%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           I K   ++    KK++  + K    +   K F   L+ L++   +   Y+  K++  +L 
Sbjct: 302 IEKNKEEILFLYKKTKFLYEKSISSYLLDKFFLKNLSLLSIIHEIEKEYQSLKEEKKILL 361

Query: 149 FEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
             +L  I+    +L+       I  K   +  H LIDE QD S++QWE +R L E+    
Sbjct: 362 NAELNQILY-ERILQDP--FPHIYEKKGIQYKHYLIDEFQDISILQWENLRILVENALSE 418

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
             +         VGD KQSIY + G + K  L     + K          ++ +  +FRS
Sbjct: 419 NGSA------MIVGDPKQSIYGWRGGDAKTFLHLIHYSSKYYHK-----EVVSIETNFRS 467

Query: 267 TADILTVVDKVFSIPENAQ-GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
             +I+   + ++                    +       G V+L               
Sbjct: 468 FEEIVKFNNSLYQSASKFFHDPIYQDIYKKSKQKIFKKPGGYVEL--------------- 512

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                  F  + +++    +  +I   I  +            +  +  DI +LVR  ++
Sbjct: 513 ------NFFRIEKKNYQQYVYNQIKEKIKKL----------FIQKYKLSDIAILVRSNEE 556

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                             V  +   ++ +HL I+ ++     I              S  
Sbjct: 557 GNF----LSEKLMVDGFFVNTSVSLLIKNHLEIEIIIQFFYVIFKPY---------CSQK 603

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
                  + K    R + +                    +K + +  ++    S ++   
Sbjct: 604 RATLILLLLKNKLIRTQKKD----HDFLIETVFLPLDIFLKRL-DFNNLLDNPSLYNRAE 658

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            I+   +   Q+           +  FL+F  R+ +   +S+ + +   E          
Sbjct: 659 NIISGLRLLNQY-------NTASICSFLDFVHRSMKIVGNSIGDFLEYWESKKEKESITF 711

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK-KMHIMPSLNDDPGIPI---- 620
           S   + +RIMT+H +KGL+ PVV L        S +     + I P L            
Sbjct: 712 SEKIDAIRIMTIHKSKGLQFPVVILPFADWNAVSKRKEGAWIDISPHLYHGLETFYLDIE 771

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              +    ++ +  + +     T+ +   LLYV  TR  + LII         
Sbjct: 772 PDLKKHIEDSSLIKIYEDYLSKTRFDNLNLLYVATTRPVEHLIIFSRHGNDKS 824


>gi|157413574|ref|YP_001484440.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9215]
 gi|157388149|gb|ABV50854.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
            MIT 9215]
          Length = 1208

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 110/831 (13%), Positives = 245/831 (29%), Gaps = 143/831 (17%)

Query: 139  EAKKKNCVLDFEDLIINTND--LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            E KK   + +F DLI  T +  LL     ++ I  KI +    +L+DE QDT + QW +I
Sbjct: 364  ELKKSFSIFNFNDLI-KTVENTLLDSEISNSNILSKIQKRFKCVLVDEFQDTDITQWNLI 422

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            +            ++    L  VGD KQ+IY F G + +  L  +               
Sbjct: 423  KKFF---------NTKNHFLICVGDPKQAIYKFRGGDIETYLDARSY----------AIE 463

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            +  L  ++RS+  ++ V++K++        L     T+                      
Sbjct: 464  VFNLTDNYRSSKKLIDVLNKLYKNGLKQSKLKYSKLTS--------------------RI 503

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              +     + +      +   ++S+           I +++    +      + I    I
Sbjct: 504  NENINPEFKFKDVFEIVEFSKKDSN-----------IEDLVTHYIVNFIVNNKKIDINKI 552

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             +L                  N + +     ++  + D  A   L      +L+     +
Sbjct: 553  AILTINNSQCLAFKKKL----NQFNLPCKIQNKQNIFDTEASFLLFLFIECLLNPRSLKN 608

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
               +  S       +++       +    + + I          F +++  +      + 
Sbjct: 609  ITLLATSKFIEIKLENLPDHGISNNLEILINKCITWSQELREKGFLNIVNELLINYKSSS 668

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                 D  + +    +  +  +     +        LN      +N    +  +      
Sbjct: 669  IIQDSDLNSNLFQLSEIVEIQLINNDFD--------LNIVFNWYKNQLDHILRI-----S 715

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                         N + + T+H++KGLE  +V        + S K  K    +   N D 
Sbjct: 716  TGEDFLTKDYNLQNGINLSTIHSSKGLEFEIVLCPYLS--IISKKSNKIKGPLWKSNIDR 773

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
             I + I  + S+   V       ++   +E  RL+YV +TR+  +LI+      +N   +
Sbjct: 774  NIYVNISNNYSK---VEKFKLIEEEDLFKESERLIYVALTRSKYKLIVFNDLEDTNNILN 830

Query: 677  NQRTWYDM----------VYDSFHNDERVKKIKLTNSINKDEWIAYEWS---THHPENTP 723
            N                 V       + +     TN +N + W     +   +    +  
Sbjct: 831  NDLLNNLENINIYKSTFEVRIEKEKIKEIFSKFKTNRLNNNLWKIDNVNKKISRVFNSDQ 890

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----LESLLSDNQ 778
                 +    + + K    L +  K+  +   I+  S                 L    +
Sbjct: 891  FISYSSYSSWIRKDKNIDGLINQYKDYDDNISIIKDSNFKNSKNYPNYFSYPNPLSEFPK 950

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
                G  +HK+++      ++ +K         N           +  +I R++   +  
Sbjct: 951  GTIAGTCLHKIIERFEFRNDNNQKLIDLIIEELNFHQIDTSLAFKVKDAILRIINISLGR 1010

Query: 839  TAMSCDSYSEVSVS-------GKINCPKKDIIIS-------------------------- 865
               +     ++            +    +D  I+                          
Sbjct: 1011 ELQNKK-LVDIPNEYLIKELKYDLTLSYEDRNINSNDISNCFFLDQEYDFGEEYANKIND 1069

Query: 866  ----------GRIDQIS-----ISQQNIFIFEYKTHHHVPQEIEH-IPYTH 900
                      G ID +      +     ++ ++K++     +    +P  +
Sbjct: 1070 LQIMNKGFHSGCIDCVFPVGNKLEDSKWWLIDWKSNSISGSDNSDCLPRNY 1120


>gi|282882935|ref|ZP_06291540.1| UvrD/REP helicase [Peptoniphilus lacrimalis 315-B]
 gi|281297346|gb|EFA89837.1| UvrD/REP helicase [Peptoniphilus lacrimalis 315-B]
          Length = 613

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 90/555 (16%), Positives = 180/555 (32%), Gaps = 110/555 (19%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   YE  KK+N  +DF+D++  T  +LK     A+ + K     + I +DE QDTS 
Sbjct: 162 QKIFLSYENYKKENHYIDFDDMLTLTYKILKDD---AYFKNKYRSYFDFIQLDEGQDTSY 218

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+ +++ L +              +F V D+ QSIY F GA+P  +L+           
Sbjct: 219 VQFLILKLLAK----------PKNNIFIVADDDQSIYGFRGAKPDELLKLNETY------ 262

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +   I  +  +FRS+ +I+ + +      +N                           
Sbjct: 263 --KDLKIYYMEENFRSSKNIVNISNLFIGQNQNRFKK----------------------- 297

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + + +D +   +     +  D              I   +  + G+           
Sbjct: 298 --AICTNNDWKNPVELIKLKNSLDQY----------EFIRDKLPKLQGS----------- 334

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R       +         D+ I    +++     H  ++D++ +  F   
Sbjct: 335 -----CAILYRNNLSAIGLVEFLERNNIDFNIK---DNKNKFFSHFIVRDIIDIIIFSND 386

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQKFANCGISKFQHVIKYIH 489
             +   +           S+  I  +  +  +                +     +     
Sbjct: 387 LSNLALYQKFYYKLEGYISKRHIAYLKNKVTDNIFKELMAYPNLPPYYLKNISKLASDFK 446

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L  +    +   F    +G  K  ++   R G  +  + +     +L  E      + E
Sbjct: 447 ILKKMKLSKALS-FIQYEMGYNKYLEENAKRLGENMNSISEYLFYISLIGENA--KDIDE 503

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            I  L+     +++ + +N N + + T+H++KGLE   VF++D        K    +   
Sbjct: 504 FIGRLKHLQFLLRKPNDSNIN-LFLSTIHSSKGLEFTNVFMIDLIDGNIPSKSAIDILPD 562

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
            +L                                EE  RL YV MTR  + L +     
Sbjct: 563 DTLG------------------------------LEEERRLFYVAMTRTKENLFLIYPYY 592

Query: 670 TSNEKKSNQRTWYDM 684
            +N K    R   ++
Sbjct: 593 RNNIKNEMSRFLIEL 607


>gi|307637600|gb|ADN80050.1| ATP-dependent DNA helicase [Helicobacter pylori 908]
 gi|325997789|gb|ADZ49997.1| ATP-dependent DNA helicase [Helicobacter pylori 2017]
          Length = 678

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 100/695 (14%), Positives = 204/695 (29%), Gaps = 124/695 (17%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQK- 82
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKL 111

Query: 83  --------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
                   N +      K P   + L      +     + +      S            
Sbjct: 112 LESIVDTKNALNATDEDKKPYTSQHLYALYSLYTNALKQEDFSAWLSSKNPEHAPYAAFY 171

Query: 135 A----HYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                 +E  KKK+  +D+ DL++     +L++                 +L DE QDT+
Sbjct: 172 ENILEEFENTKKKHDYIDYNDLLLLFKKAMLERP-----------SPYKEVLCDEFQDTN 220

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +    
Sbjct: 221 PLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN--- 265

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH-RSSRIGQVGTV 308
                  +  L  ++RS+ +IL + ++V    +     + +   + +  + + +     +
Sbjct: 266 -----ARVFTLTKNYRSSKEILDLANQVIQHNQRIYPKNLEVVKSGKFNKPTLLNYNDNI 320

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
              + +  +   + + ++ +     ++   +  A++ +  +           +      K
Sbjct: 321 AQCQDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRSHNVPSK-----RKGSASFFESK 375

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            V  A DI  L+   KD      +                          KD+      +
Sbjct: 376 EVALALDICALLFNPKDIMAAIHIL--------------SYISDIGSNTAKDIHEALMLL 421

Query: 429 LSQEDDLS-----FVCMLKSPLFNFS----EDDIFKICTQRHETETVYEYIQKFANCGIS 479
            + +   +         + +     +     ++IF +         + +           
Sbjct: 422 GNGDLKSALIQPNQEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHP 481

Query: 480 KF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----E 531
           K        +     L   A   SP      IL      Q F +R   E     D    E
Sbjct: 482 KISLNGAKTLSDFFILYTKAPTHSPSALIKHILE-STFFQTFKTRLLKERSKNKDGSYNE 540

Query: 532 F--LNFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           F  L    R  +     SSL +    L        I  + +     V +++VH +KGLE 
Sbjct: 541 FKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEF 600

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             ++++D     F +  +                                         E
Sbjct: 601 KDIYIIDLMEGRFPNHKLMNTGGG----------------------------------IE 626

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
           E  RL YV +TRA + L +    N   E    +  
Sbjct: 627 EERRLFYVAITRAKENLWLSYAKNELRENAKPKEH 661


>gi|86742471|ref|YP_482871.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569333|gb|ABD13142.1| ATP-dependent DNA helicase, Rep family [Frankia sp. CcI3]
          Length = 736

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 95/646 (14%), Positives = 182/646 (28%), Gaps = 168/646 (26%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFI-KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
             +  +    +  DL  +++ ++   +             + T A       L A YEE 
Sbjct: 138 ARLHLRPDRAELRDLTSEVEWAKTTLVTPADYARMAAASGRETAAPPETVARLYAAYEEV 197

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           K+   V+D EDL++ T  ++++    +W+  ++     H ++DE QD + +Q  V+ +  
Sbjct: 198 KRDAGVIDMEDLLLLTAAMIEEH---SWVAAEVRARYRHFVVDEYQDVNDLQQRVLDAWL 254

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            +             L  VGD  Q+IYSF GA P+ +L   R             +++ L
Sbjct: 255 GERDS----------LCVVGDPHQTIYSFTGASPEHLLGFPRRFP--------DAAVVRL 296

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              +RST  ++ + + +             +    R  ++R      V L          
Sbjct: 297 IRDYRSTPQVVGLANTLM-----------RAAPAARLVAARPDGPAPVWL---------- 335

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                            +  S    A  +A  I  ++             + A +I VL 
Sbjct: 336 -----------------ECDSEPAEAAAVASRIRRLLDQG----------VPASEIAVLY 368

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +               I+ +        +   +                ++ + +
Sbjct: 369 RTNAQSEAYEAAI----GGAGIAYLLRGGEKFFERTEV----------------VAAMRL 408

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           L++ + +   D    +                           V   +  L   A   + 
Sbjct: 409 LRAAVRSADTDRPEGLTAA------------------------VADILAALGWRADQPTV 444

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                                  E  + L             S     +L + + +    
Sbjct: 445 GSGAER-----------------EQWENLAALHRLAGDLAARSPE--ADLEAFVAELGDR 485

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
               H      V + T+HTAKGLE   VFLV          H +                
Sbjct: 486 ATHEHQPTVQGVTLSTLHTAKGLEWDAVFLVGLTEGTLPLVHART--------------- 530

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                    E  RLLYVG+TRA   L++    + +   + ++R 
Sbjct: 531 --------------------AEQIAEERRLLYVGVTRARRHLVLSWALSRAEGGRRSRRP 570

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
              +        E    ++          +A    T    +     
Sbjct: 571 SRFLDDLRPMRRESAAGVRHGGRGEGTRPVAGAEETGPGRSRSRSA 616


>gi|297570992|ref|YP_003696766.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931339|gb|ADH92147.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 677

 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 106/615 (17%), Positives = 179/615 (29%), Gaps = 178/615 (28%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            +   R           A+     +L   YEEAK +  V+DFED+I+    +++     A
Sbjct: 152 EEYVQRATELHRDPVAGATYQDIAHLIRRYEEAKTERGVIDFEDVILLLIGIMRDEPEIA 211

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            I   I  +  H ++DE QD S +Q  ++     D           R L  VGD  Q+IY
Sbjct: 212 RI---IRHQYRHFVVDEYQDVSPMQHRLLDLWLGD----------RRDLCVVGDVAQTIY 258

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF GA+   +    R   +          I+ L   +RST  ++ + + V S        
Sbjct: 259 SFAGAQSAYLSEFSRHYPQ--------AKIVTLNRDYRSTPQVVDLANTVISQAR----- 305

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                             G V L   + S        +  ++ +Y D   +       A 
Sbjct: 306 ----------------LDGAVHLTSMLPS-------GRPVAFDAYADDTDE-------AT 335

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            IA  I +++              +  DI +L R    +         L     I V   
Sbjct: 336 SIAQKIVSLVNHG----------AKYSDIAILYRTNAQSAAFETALTDL----GIPVSIK 381

Query: 408 DRFILTDHLAIKDLMALGR-FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
           D         +K+ M + R      +       ++                        +
Sbjct: 382 DAERFFQRKDVKEAMVMLRSVARLPQHKGLEDTVV---------------------DGLI 420

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
               +  A  G    +     ++ L  IA                       +    +  
Sbjct: 421 QMGWRPEAPTGRGAIRERWDALNALREIA-----------------------AEMEEKRG 457

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             ++EFL       +                       +    N V + ++H +KGLE  
Sbjct: 458 ADVEEFLAEMRERAE---------------------MMNEPVSNSVTLASLHASKGLEWD 496

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VFLV     +                                     +         EE
Sbjct: 497 SVFLVGMSEGLMP-----------------------------------ISLAKAGEGIEE 521

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YVG+TRA   L I      S      +  +         +     + + T +  K
Sbjct: 522 ERRLFYVGITRAKHHLSISYARGNSGRTDRKRSRFL-------EDVWATTQSRATQARKK 574

Query: 707 DEWIAYEWSTHHPEN 721
              +AYE+ T+HP++
Sbjct: 575 SAELAYEFETYHPQD 589


>gi|221369980|ref|YP_002521076.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131]
 gi|221163032|gb|ACM04003.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131]
          Length = 679

 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 106/732 (14%), Positives = 205/732 (28%), Gaps = 132/732 (18%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQ 60
            R    L    E I +      +   ++   +       G   + + A    L       
Sbjct: 66  RRAAAELTRRVERITRHALGQAH--AAEALTWAGTFHGIGARILRENAALIGLNPDFTIH 123

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E+   L++          +  +   +   + P     L              +  +  
Sbjct: 124 DREDSADLMNLV--------RHGLGLSKTESRFPAKGTCLAIYSRAVNAEEPLADVLRAH 175

Query: 121 KSTLASLT-LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
               A+     + L + Y  AK+   VLD++DL++    ++ +          +    +H
Sbjct: 176 FPWCAAWEGELRRLFSGYVAAKQAQNVLDYDDLLLAWAQVMAEP----AFAAHLGAAWDH 231

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +LIDE QDT+ +Q  ++ +L              R L  VGD+ Q+IY+F  A  + +L 
Sbjct: 232 VLIDEYQDTNRLQARILLAL----------KPDGRGLTVVGDDAQAIYAFRAATVRNILD 281

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                            ++ L  ++RSTA IL   ++V                      
Sbjct: 282 FPAAFA-------PPAHVVTLDRNYRSTAPILAAANRVIERAAERFTK------------ 322

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW +  S    +                  ++ +  AR     +      
Sbjct: 323 ---------DLWTERASAEKPRLVTL--------------ATEADQARFFVDEVLRNREE 359

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      ++ KD  VL R    +  I            +  V        D   +K
Sbjct: 360 G----------MRLKDQAVLFRTSSHSGQIEVEL----TRRNVPFVKFGGLKFLDSAHVK 405

Query: 420 DLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           DL+A+ RF  +  D ++   +L+  P    +                      +      
Sbjct: 406 DLLAILRFAQNPRDRVAGFRVLQLVPGVGPASAGRALEALAAAADPLAALARLRPPPRAG 465

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
           + +  + + +  L          D+   +  A+   +  + R   +      + L     
Sbjct: 466 ADWTALAEALPRL--------GSDWPAGLAQARAWYEPQLDRLHEDAEVRRADLLQL--E 515

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLVDTG 594
                Y S +  +++L   PP      +     + + + + T+H+AKG E   V L++  
Sbjct: 516 QIAAGYPSRERFLTDLALDPPDATGGQAGVPLKDEDYLILSTIHSAKGQEWRAVHLLNVV 575

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                          +  EE  RLLYV 
Sbjct: 576 DGCIPSDLGTGSS----------------------------------AEIEEERRLLYVA 601

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA D+L++          ++     +     S      +                   
Sbjct: 602 MTRAKDRLVLGVPQRFYVTGQARHGDRHVHAMRSRFLPRDLLDAFEVTHWCPPLAEGARA 661

Query: 715 STHHPENTPLER 726
               P      R
Sbjct: 662 VPAPPPINVAAR 673


>gi|123968742|ref|YP_001009600.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. AS9601]
 gi|123198852|gb|ABM70493.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
            AS9601]
          Length = 1208

 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 106/831 (12%), Positives = 244/831 (29%), Gaps = 143/831 (17%)

Query: 139  EAKKKNCVLDFEDLIINTND--LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            E KK   + +F DLI  T +   L     ++    KI +    +L+DE QDT + QW +I
Sbjct: 364  ELKKSFSIFNFNDLI-KTVENTFLDSEISNSNTLSKIQKRFKCVLVDEFQDTDITQWNLI 422

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            +            ++    L  VGD KQ+IY F G + +  L  +               
Sbjct: 423  KKFF---------NTKNHFLLCVGDPKQAIYKFRGGDIETYLDAR----------SNAIE 463

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            +  L  ++RS+ +++ V++K++        L                      L  ++  
Sbjct: 464  VFSLTDNYRSSKNLIDVLNKLYKNGLKQSKLKYSK------------------LTSRINE 505

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              + +   +       F     +             I +++    +      + I    I
Sbjct: 506  NINPEFKFKDVFEIVEFSKKETD-------------IEDLVTHYIVNFILNNKEIDINKI 552

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             +L                  N + +     ++  + D  A   L      +L+     +
Sbjct: 553  AILTLNNSQCLDFKKKL----NQFNLPCKIQNKQNIFDTEASSLLFLFIECLLNPRSLKN 608

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
               +  S       +D+       +    + + I          F +++  +      + 
Sbjct: 609  ITLLATSKFIEIKLEDLLDHGISNNLEILMNKCITWSQELREKGFLNIVNELVINYKSSS 668

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                 D  + +    +  +  +     +        LN      +N    +  +      
Sbjct: 669  IIQDSDLNSNLFQLSEIVEIELINNDLD--------LNIVFNWYKNQLDHILRI-----S 715

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                         N + + T+H++KGLE  +V        + S+K  K    +   N D 
Sbjct: 716  TGEDFLTKDYNLQNGINLSTIHSSKGLEFEIVLCPYLS--IISNKLNKIKGPLWKSNIDR 773

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
             I + I  + ++   V       ++   +E  RL+YV +TR+  +LI+      +N   +
Sbjct: 774  NIYVNISNNYAK---VEKFKLIEEEDLFKESERLIYVALTRSKYKLIVFNDLEDTNNILN 830

Query: 677  NQRTWYDM----------VYDSFHNDERVKKIKLTNSINKDEWIAYEWS---THHPENTP 723
            N                 V       + +     TN +N + W     +   ++   +  
Sbjct: 831  NDLLNNLENINIYKSTFKVRIENEKIKEIFSKFQTNRLNNNLWKIDNVNKKISNVFNSDQ 890

Query: 724  LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----LESLLSDNQ 778
                 +    + + K  + + +  K+  +   I+  S                 L    +
Sbjct: 891  FISYSSYSSWIRKDKNIEAVINQYKDYEDNISIIKDSNFKNSKNYPNYFSHPNPLSEFPK 950

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
                G  +HK+++      ++ ++         N           +  +I R++   +  
Sbjct: 951  GTIAGTCLHKIIERFEFRNDNNQELIDLIIEELNFHQIDTSLAFKVKDAILRIINISLGR 1010

Query: 839  TAMSCDSYSEVSVS-------GKINCPKKDIIIS-------------------------- 865
               +     ++            +    +   I+                          
Sbjct: 1011 ELQNKK-LVDIPNEYLIKELKYDLTLSYEGRNINSNDISNCFFLDQDYEFGEEYANKIND 1069

Query: 866  ----------GRIDQIS-----ISQQNIFIFEYKTHHHVPQEIEH-IPYTH 900
                      G ID I      +     ++ ++K++     +    +P  +
Sbjct: 1070 LQIMNKGFHSGCIDCIFPVGNKLEDSKWWVIDWKSNLISDSDNSDCLPRNY 1120


>gi|119896636|ref|YP_931849.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
 gi|119669049|emb|CAL92962.1| ATP-dependent DNA helicase [Azoarcus sp. BH72]
          Length = 700

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 111/752 (14%), Positives = 213/752 (28%), Gaps = 145/752 (19%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQ 60
            R    +    + I   +     +      ++       G   + + A    L  A    
Sbjct: 81  RRAADEMGRRVQRILAQVAVDTPWLAQATLQWSGTFHGIGARLLREYAGRIGLDPAFTIH 140

Query: 61  CIEERFSLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             E+   L++        + + K    +             +    E ++    +     
Sbjct: 141 DREDSADLMNLARHEAGLSTRNKRFPLKGTCLAIYSAAVNTRAPLAEVLQTTFPWCAEWE 200

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            +         K L   Y +AK+   VLD++DL++    ++ +  + A I         H
Sbjct: 201 AE--------LKTLFRAYVQAKQAQQVLDYDDLLLYWAHMVAEPALGAEI----GGLFQH 248

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QDT+ +Q E++ ++              R L  VGD+ QSIY+F GA  + +L 
Sbjct: 249 VLVDEYQDTNHLQAEILLAM----------KPDGRGLTVVGDDAQSIYAFRGATIRNILD 298

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                +            + L  ++RST  IL   + V +                    
Sbjct: 299 FPARFE-------PPAHRVTLEQNYRSTRPILDAANAVIAQAAERYSK------------ 339

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     LW    S    Q    ++                     +   +      
Sbjct: 340 ---------DLWSLRESTARPQLVSVRDDADQS--------------AFVVERVLARREQ 376

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      I+ K   VL R    +  +            I  V        +   +K
Sbjct: 377 G----------IKLKQQAVLFRAASHSARLEMEL----TRRNIPFVKFGGLKFLEAAHVK 422

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANC 476
           D++A+ R++ +  D +S   +++  L          +        E   +    Q     
Sbjct: 423 DMLAVLRWVENLRDRVSGFRVVQ-LLVGIGPKTAGKVLDHVVAAPEGCELL-AEQPVPEA 480

Query: 477 GISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
             + +Q     I  L    A + +  +        +  R   +          + +    
Sbjct: 481 ARADWQAFSTLIEHLRRPDAPWPASFELACRWYEGQMPR---LYDDAVVRQGDIQQLGRI 537

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSA----NHNEVRIMTVHTAKGLESPVVFLV 591
                     S Q  ++EL   PP+     +     + + + + T+H+AKG E   V ++
Sbjct: 538 AATY-----PSRQRFLTELTLDPPSATSDEAGVPLLDEDYLILSTMHSAKGQEWNSVSVL 592

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
           +                                           I     +  EE  RLL
Sbjct: 593 NVVDGCVPSD----------------------------------IATRSSAEIEEERRLL 618

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YV MTRA D L +             QR +               + +   +    ++  
Sbjct: 619 YVAMTRAKDHLELL----------VPQRFYVSQQQGMGDRHVYAGRTRFIPNRLLPQFEQ 668

Query: 712 YEWSTHHPE--NTPLEREETIKQLMDEQKIPK 741
             W    PE   TP  R+  +      + +  
Sbjct: 669 VSWPEPPPEFRGTPQSRQAALDLAAKMRGMWD 700


>gi|15611914|ref|NP_223565.1| putative ATP-dependent helicase [Helicobacter pylori J99]
 gi|4155417|gb|AAD06425.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
          Length = 676

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 103/696 (14%), Positives = 203/696 (29%), Gaps = 128/696 (18%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQKN 83
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKL 111

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-----------TLAKY 132
           + +    K +   ++K   +      +   +      +   A L              + 
Sbjct: 112 LESIVDTKNALTDEDKKPYTSQHLYALYSLYTNALKQEDFSAWLSSKNPEHAPYAAFYEN 171

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           +   +E  KKK+  +D+ DL++     +L++                 +L DE QDT+ +
Sbjct: 172 ILEEFENTKKKHDYIDYNDLLLLFKKAMLERS-----------SPYKEVLCDEFQDTNPL 220

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +      
Sbjct: 221 QESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN----- 263

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +  L  ++RS+ +IL + ++V    +     + +   + +             L 
Sbjct: 264 ---ARVFTLTKNYRSSKEILDLANQVIQHNQRIYPKNLEVVKSGKFN--------KPTLL 312

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM----IGTDTIFSNGK 367
               +    Q   ++      F  +      +  A ++   + +         +      
Sbjct: 313 NYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFES 372

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           K V  A DI  L+   KD      +                          KD+      
Sbjct: 373 KEVALALDICALLFNPKDIMAAIHIL--------------SYISDIGSNTAKDIHEALML 418

Query: 428 ILSQEDDLS-----FVCMLKSPLFNFS----EDDIFKICTQRHETETVYEYIQKFANCGI 478
           + + +   +         + +     +     ++IF +         + +          
Sbjct: 419 LGNGDLKSALIQPNQEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMH 478

Query: 479 SKF----QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD---- 530
            K       ++     L   A   SP      IL      Q F +R   E     D    
Sbjct: 479 PKISLNGAKMLSDFFILYTKAPIHSPSALIKHILE-SAFFQTFKTRLLKERSKNKDGSYN 537

Query: 531 EF--LNFTLRNEQNSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
           EF  L    R  +     SSL +    L        I  + +     V +++VH +KGLE
Sbjct: 538 EFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLE 597

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V+++D     F +  +                                         
Sbjct: 598 FKDVYIIDLMEGRFPNHKLMNTGGG----------------------------------I 623

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
           EE  RL YV +TRA + L +    N   E    +  
Sbjct: 624 EEERRLFYVAITRAKENLWLSYAKNELRENAKPKEH 659


>gi|257451430|ref|ZP_05616729.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 3_1_5R]
 gi|317058010|ref|ZP_07922495.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 3_1_5R]
 gi|313683686|gb|EFS20521.1| ATP-dependent nuclease subunit A [Fusobacterium sp. 3_1_5R]
          Length = 1007

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 122/891 (13%), Positives = 274/891 (30%), Gaps = 181/891 (20%)

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF-IKIRDRFNT 116
             +  +E        F        + + T+  +++   L+E+L +  + F   +      
Sbjct: 242 GEEEKQEILKHERDTFFKTNVFDGRKLSTRGKDEEILALREELLEELESFRCDLAKEVYN 301

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN-DLLKK-------RDVSAW 168
            +M     +   + + +   Y+  K+K  + +++D+ + T   L ++         ++  
Sbjct: 302 EEMIFFEESLFAIFEEIYTLYDTYKRKEKIFNYDDIAVYTYLTLFQEDLHFVEGNAITDT 361

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +   +D +I+ + +DE QDTS++QW+++ +  E            +++  VGDEKQSIY 
Sbjct: 362 LEEVLDLKIHSVFLDEFQDTSILQWKILSAFLE----------RAKSVICVGDEKQSIYG 411

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + G E K       I             +  L  S+RS + I+   +  F          
Sbjct: 412 WRGGEKKLFEDLPNIL---------DAKVENLDTSYRSLSSIVDFTNDFFKSFPLLYQEE 462

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                 W+ + S+   +   +  S+    +   +          
Sbjct: 463 GID-------------------WQFLESKSHKKQRGEVLSYFVEEEEALE---------- 493

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
               +  +I                  + +L RK K    I+      K    I    + 
Sbjct: 494 ---KLGELIEEKYSG--------NYGSLSILARKNKTLLQISDFLEEKK----IPYQLSL 538

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-- 466
           +    +   I   ++L R+  + +  L  V   +S +   S + + K+ T +        
Sbjct: 539 QKEYQEEATIDAFLSLFRYFCTGK-YLYLVEFFRSSVLQASNEILKKLLTGQENMIQYIY 597

Query: 467 ----YEYIQKFANCGISKFQHVIKYIHELIHIA-QFCSPHDFFTLILGAKKGRQQFISRF 521
               ++   K +    + +    +   ++  +                       +  + 
Sbjct: 598 SGKEWKEKPKGSQEVRTLYLEFQEKEGKIEDMWLHCIKLFSLTEYFNKDSHILACYSFQQ 657

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                D   E+       ++N   +L+                   + + +++M++H +K
Sbjct: 658 SLSYYDSWFEYFEA---FDKNQLVNLEAW--------------EEESKDAIQLMSIHKSK 700

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS-------KSRNNIVSD 634
           GLE   V   +       ++    +       D   +  +                   D
Sbjct: 701 GLEFDNVIYFEAKDSRKGNREQSILFYFQMAEDYRSLEHYFLTRGKYRKYMDYLPEPFPD 760

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            + +++K  +EE    LYV +TR    L +             + T              
Sbjct: 761 YLSNVEKKEREEEINTLYVALTRPKHNLYLFFSETWKGRDLVEELT------------PS 808

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
              + L  +  K E    +      E    E ++  KQ  ++  +  +L           
Sbjct: 809 SSAMFLPENKGKKEEENRQGIVLAFEKEVKEFDKDEKQRPEKYTLLTELHRME------- 861

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                                       GL  H  L+ +    E + +        + A 
Sbjct: 862 ----------------------------GLATHFFLEHLKYATEEEIEFAKKRVIQEYAS 893

Query: 815 LWPAKEYKNLL--LSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRID 869
            +  ++ + L     I ++L+    +   S D    Y E S+    +           ID
Sbjct: 894 YFGREKIEALFSKERIQQILKVD--SRIFSKDWDYIYPEFSIISPFDQK------KYVID 945

Query: 870 QISISQQN------IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
           ++ I +        +++ +YKT  + P+           QL  Y+ IL++ 
Sbjct: 946 RLMIKKAGKNKKGLVYLVDYKTGGNDPK-----------QLENYKHILQEL 985


>gi|325661050|ref|ZP_08149677.1| hypothetical protein HMPREF0490_00410 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472557|gb|EGC75768.1| hypothetical protein HMPREF0490_00410 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 414

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 90/521 (17%), Positives = 160/521 (30%), Gaps = 117/521 (22%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + ++  +ILIDE QD + +Q++VIR L                LF VGD+ QSIY F GA
Sbjct: 1   MAEKFQYILIDEFQDINQVQYDVIRMLAL----------PENNLFIVGDDDQSIYRFRGA 50

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P+ +L   +               I L +++RST  +++   +V    +N       + 
Sbjct: 51  RPEIMLGFSKDYPN--------AKSIILDVNYRSTKAVVSAARRVIERNKNRYQKEIITV 102

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                      Q   V + E      +S                            +   
Sbjct: 103 N---------DQGDNVHIQEVRHPVEES--------------------------HYVREQ 127

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-I 411
           I+  +   T          +   I VL R   +             +Y I     +    
Sbjct: 128 IAKAVAAGT----------EPSQIAVLYRTNTEPR----ALVETFMEYHIPFQMKEHLPN 173

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
           L +H   +D  A  R  L   D   F+ ++  P      D + +                
Sbjct: 174 LYEHFIGRDFQAYMRMALGGRDRGDFLMIMNRPNRYIGRDSVDRGEISFEN--------L 225

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
           +            I  +   + +    +P+     I     G   F++ +  +    L++
Sbjct: 226 RKYYMEKDWMVDRIDQLEVDLKVISRMTPYAAIQYI-RKSVGYDLFLNEYAIKRKMKLED 284

Query: 532 FLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAH---SANHNEVRIMTVHTAKGLESP 586
                   E+    + +++E  + +E+Y   ++      + N N V +MT H AKGLE  
Sbjct: 285 LQELIREMEERAKEFKTIEEWFAHIEKYTEELRLQAVTRTENRNAVSLMTFHAAKGLEYD 344

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF++     V  +K  +    M                                     
Sbjct: 345 TVFIIGANEDVTPYKKAELPEEMEEERRM------------------------------- 373

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                YV MTRA   L I      + +     R   ++  +
Sbjct: 374 ----FYVAMTRAKKHLTISYVREKNGKAMEQSRFLGELFQN 410


>gi|224533481|ref|ZP_03674071.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi CA-11.2a]
 gi|224513361|gb|EEF83722.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi CA-11.2a]
          Length = 1169

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 139/854 (16%), Positives = 269/854 (31%), Gaps = 117/854 (13%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK----F 481
            + +  ++   +   +L S + N   +   +    + +   + E   +     + K     
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWN--LQRILIKQDKICLIEEFIENIIVLLEKNEITL 634

Query: 482  QHVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             + I  I    +  I IA                  +   I     E +   +  L    
Sbjct: 635  INAINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIIS 694

Query: 538  R--NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            +  +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL
Sbjct: 695  KIYHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLGMNIVFL 754

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            ++T     S+   KK        D      +          + +  K+ +     E   +
Sbjct: 755  LNTTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNI 806

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             YVG TRA   L I K ++ +++     + +         N       K  N    +  +
Sbjct: 807  FYVGATRAKFALFIIKINSITSKLLEIAKFFTIDDIKHDFNIHEFIGQKRFNKKKDNTNV 866

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
              +     P    + ++E                     +  E Y       + + + + 
Sbjct: 867  NTKLIPPKPIIKNMFKKEYTSSFSSLTA------QAHHKEFYENYDFKNINYEKETELDY 920

Query: 771  ESLLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKE 820
            E  L +   +  + G I+H  ++ I                   I     K        E
Sbjct: 921  EPGLEETLPKGKDIGNILHAAIEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNTIE 980

Query: 821  YK-NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP--------------- 858
             + +L   I  +L       N  +      +   E+    KIN                 
Sbjct: 981  IQNSLAKMIYNILTYNIRAINTRLCDV--EELQKEMEFLIKINPEFQKQKYLFDKHFEDL 1038

Query: 859  ---KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSI 906
                 D  + G +D I  +   I+I +YKT++    + ++             +  Q  I
Sbjct: 1039 HIKLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQYKI 1098

Query: 907  YEKILKDS-YPNKS 919
            Y   +K   + NK 
Sbjct: 1099 YALGIKKILFKNKK 1112


>gi|15594978|ref|NP_212767.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi B31]
 gi|8134451|sp|O51578|EX5B_BORBU RecName: Full=Exodeoxyribonuclease V beta chain
 gi|2688551|gb|AAC66981.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi B31]
          Length = 1169

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 142/858 (16%), Positives = 277/858 (32%), Gaps = 125/858 (14%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    ++  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELKKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK----F 481
            + +  ++   +   +L S + N   +   +    + +   + E   +     + K     
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWN--LQRILIKQDKICLIEEFIENIIVLLEKNEITL 634

Query: 482  QHVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             + I  I    +  I IA                  +   I     E +   +  L    
Sbjct: 635  INAINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIIS 694

Query: 538  R--NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            +  +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL
Sbjct: 695  KIYHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLGMNIVFL 754

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            ++T     S+   KK        D      +          + +  K+ +     E   +
Sbjct: 755  LNTTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNI 806

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             YVG TRA   L I         K ++  +    +   F  D+      +   I +  + 
Sbjct: 807  FYVGATRAKFALFII--------KINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFN 858

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----SPIKNDINEPYILNPSTIDTKG 766
              +++T+   NT L   + I + M +++               +  E Y       + + 
Sbjct: 859  KKKYNTNV--NTKLIPPKPIIKNMFKKEYTSSFSSLTAQAHHKEFYENYDFKNINYEKET 916

Query: 767  KTNLESLLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLW 816
            + + E  L +   +  + G I+H  ++ I                   I     K     
Sbjct: 917  ELDYEPGLEETLPKGKDIGNILHAAMEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNL 976

Query: 817  PAKEYK-NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP----------- 858
               E + +L   I  +L       N  +      +   E+    KIN             
Sbjct: 977  NTIEIQNSLAKMIYNILTYNIRAINTRLCDI--EELQKEMEFLIKINPEFQKQKYLFDKH 1034

Query: 859  -------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIA 902
                     D  + G +D I  +   I+I +YKT++    + ++             +  
Sbjct: 1035 FEDLHIKLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDL 1094

Query: 903  QLSIYEKILKDS-YPNKS 919
            Q  IY   +K   + NK 
Sbjct: 1095 QYKIYALGIKKILFKNKK 1112


>gi|213965910|ref|ZP_03394101.1| helicase, uvrd/rep family [Corynebacterium amycolatum SK46]
 gi|213951488|gb|EEB62879.1| helicase, uvrd/rep family [Corynebacterium amycolatum SK46]
          Length = 1119

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 133/1002 (13%), Positives = 270/1002 (26%), Gaps = 164/1002 (16%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI---EE 64
            +  E    I +          S       +     +              + +       
Sbjct: 93   AAAELRRDIDRRFACEVGEGGSVGAGQGGMVRAVHSLAYAVVRDAAVSRGEPEPSLTTGA 152

Query: 65   RFSLLSSFFLTQKFTPQKNIITQEINKKSP------DLKEKLKKSQDEFIKIRDRFNTYK 118
            R   +    L            + +    P       +++ L ++ +  I          
Sbjct: 153  RQDAVVRQLLAGHAEDGGAYWPERLRPALPLVGFSRAVRDFLLRAAERGIDAP--RLQQL 210

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKN--CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                 + S   A    A Y++  +      L+  +++      L + D  A    +  + 
Sbjct: 211  GVDYGIESWCAAGKFMAEYQQTMRLAWEPSLNAAEIVSAA---LMELDADAQALARWGK- 266

Query: 177  INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             + +L+D+ +  S     ++        V              GDE QS++ F GA    
Sbjct: 267  -SVVLVDDAEHLSPEAARLVDRFVSQAAVA----------VITGDEDQSVFHFRGANNDY 315

Query: 237  VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +                ++  I L  S+R  ADI  + + V      A            
Sbjct: 316  LR----------GTGKAEYKAIHLQQSYRCNADIADLANAVSQRLPKAPAYRGI------ 359

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                  G VGT +  E  V  +      +          +    S       +A     +
Sbjct: 360  -----AGSVGTQEARESEVGSNSETAAAEDSYAAKSAVKIAIHPSERAQRATVADYFRRL 414

Query: 357  IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
               +          +  KD+ V+VR                +   + V  +   I+  H 
Sbjct: 415  HIDE---------GVAWKDMAVIVRSGAG----ESSLFRALSRAGVPVQIDPTDIVLSHQ 461

Query: 417  A-IKDLMALGRFILSQEDDLSFVCMLKSPL---------------------FNFSEDDIF 454
              ++ LM   R  ++Q DD+ +   L  PL                        +   + 
Sbjct: 462  RLVRALMVALRATMNQLDDVEWDEFLSGPLVNMDPIVKERLLRGIRKADLFGGAAMTQLI 521

Query: 455  KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
             I           E I+  +       Q  +  +      A           I  +    
Sbjct: 522  GILKADGLATEQLELIESLSQRERQALQVPLDLLSAARE-ALRDGVEATLWAIWQSTGLA 580

Query: 515  QQFISR------FGNEVIDVLDE---FLNFTLRNEQNSYS-SLQELISELEQYPPTIKRA 564
               ++        G      LD      +F     + +   ++   I+ +E+    I   
Sbjct: 581  DHLVAASLRGGTAGASADRDLDAVMALFDFAGDRVELNPKLTVDGFIASVEEQELPIGAR 640

Query: 565  HSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
              +    + VRI++ H A G +   V +V      +    +    +  +           
Sbjct: 641  DRSGVERDAVRILSAHAALGRQWKAVAVVGVQEGQWPSLGVTGSVMKQNEFIGLVDHGIE 700

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ---- 678
            P+    +                E  RLL+V ++RASD++++    +  +    +     
Sbjct: 701  PREYINS----------MADALAEERRLLHVAVSRASDRVLLTAVDSPDDVGVPSPFIIE 750

Query: 679  --------------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWI-------------- 710
                          ++      +          +   +    ++                
Sbjct: 751  LVEKLGNSATELAKQSEASSAANGVGATANEANVGKPDVAEAEDVAWAGEGLPRVLSVES 810

Query: 711  ------------AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI---NEPY 755
                        A   +        L R   ++           L +P  +      +P 
Sbjct: 811  LLAELRAAVVDDAETETRRRQAARQLARLAQVEVAGAHPDTWWGLRAPSTSKPVNDKKPM 870

Query: 756  ILNPSTIDTKGKTNLESLLSDNQ---TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
             +NPS ++      L+++L  +        G ++H+ ++ +                  +
Sbjct: 871  RINPSKVEATLNCPLKAMLDKSAPTSAMYLGSLLHQAVEAVAKGVTVPEAQSEIRRVFGD 930

Query: 813  AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
                P    +    +    LE+         D  +EV V   IN    DI+I GRID++ 
Sbjct: 931  LSDDPEWRKRTEEETWLTGLEDWQRWIETKKDIGTEVPVKVNIN---DDIVIVGRIDRLI 987

Query: 873  ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                    I + KT    P   E     H AQL+ Y+  L  
Sbjct: 988  EDADGAVQIVDIKTGKTAPSGKE--VEGH-AQLATYQLALSK 1026


>gi|317471574|ref|ZP_07930920.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
 gi|316900953|gb|EFV22921.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA]
          Length = 584

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 103/674 (15%), Positives = 183/674 (27%), Gaps = 172/674 (25%)

Query: 20  LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             P      + ++K   L  E         A T    +  +  E     L      +  T
Sbjct: 32  AGPGTGKTKTLVDKIAYLVKERNVSPSQITAVTFTNQAAAEMRERLAKRLGGKRAVKDMT 91

Query: 80  PQK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL---------- 127
                +I  Q + ++  D+   L    +     ++  N     K     L          
Sbjct: 92  IGTFHSICLQLLKQQGEDII--LADEAELLETAKEALNRLDSDKKPKDFLKQISNFKNNV 149

Query: 128 ----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L       ++E   +  + DF+DL++      +   +          + +++L+D
Sbjct: 150 PMEERLTNDEADCFQEIMSEMGLTDFDDLLLRVLSQAESPVLQT-------SQFSYLLVD 202

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QD + IQ+ ++             + + + LF +GD  QSIY F G++ +   R K  
Sbjct: 203 EFQDINDIQFRLVLFW----------NQNGKELFVIGDPDQSIYGFRGSDSRCFARLKEE 252

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                         I L  ++RST +I+    +V S     +                  
Sbjct: 253 IPDLYE--------IYLKKNYRSTPEIVESALQVISRNPGNKR----------------- 287

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 L          +       W+               A  IA  I+ + G   + 
Sbjct: 288 -----CLSAVREPGKPVRLVTASNDWS--------------EAIFIAKEINRLTGGMDMM 328

Query: 364 SNGKK-----RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                           +I VL R       I    R       I  V   +    +   +
Sbjct: 329 DAQNYALKTEHPRGFGEIAVLYRTHHQARAIEKCLRQE----SIPCVITGQDSFLEEEKV 384

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           K   +  RF+L ++D  +    L                                     
Sbjct: 385 KGTTSFFRFLLDEKDTKALQIALN------------------------------------ 408

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
             F        E   + +  SP +   L +               ++             
Sbjct: 409 -AFPDCGTLEKEFKQLLKKESPGEVLKLWMEKNGLLDDESLLSLYKM------------T 455

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 +S    +    +             + V +MT+H +KGLE PVVF+  T     
Sbjct: 456 LFHKDMASFLSNLLLGTEGDIKRSGEKEYTSDAVTLMTLHGSKGLEFPVVFIAGTKQGSI 515

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +                                        + +EE  RL YVGMTRA
Sbjct: 516 PLESP-----------------------------------AHHADKEEERRLFYVGMTRA 540

Query: 659 SDQLIICKHSNTSN 672
            ++LI+     +S 
Sbjct: 541 KEELILLTRKESSE 554


>gi|217032458|ref|ZP_03437951.1| hypothetical protein HPB128_175g19 [Helicobacter pylori B128]
 gi|298736137|ref|YP_003728662.1| Rep helicase [Helicobacter pylori B8]
 gi|216945866|gb|EEC24486.1| hypothetical protein HPB128_175g19 [Helicobacter pylori B128]
 gi|298355326|emb|CBI66198.1| Rep helicase, single-stranded DNA-dependent ATPase (Rep)
           [Helicobacter pylori B8]
          Length = 675

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 99/683 (14%), Positives = 189/683 (27%), Gaps = 188/683 (27%)

Query: 67  SLLSSFFLTQKFTPQK------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +  L Q    +K      +      + K P   + L      +     + +     
Sbjct: 95  EHYPNLSLKQPKELKKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWL 154

Query: 121 ----KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQ 175
                       L + +   +E  KKK+  +D+ DL++     +L+              
Sbjct: 155 SSKNPEHTPYAALYENILEEFENTKKKHDYIDYNDLLLLFKKAMLETP-----------S 203

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
               +L DE QDT+ +Q  ++ ++            +P +LF VGD  QSIY+F+GA+  
Sbjct: 204 PYKEVLCDEFQDTNPLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADIS 251

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +    +  +           +  L  ++RS+ +IL + ++V    E     + +   + 
Sbjct: 252 IISNFTQKYKN--------ARVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKSG 303

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
           +                                       L   ++     + IA  I  
Sbjct: 304 KFNKPT----------------------------------LLNYNNNIAQCQDIAKRI-- 327

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                             K++ V+ R       +    R     + +           + 
Sbjct: 328 ------------VMRKNFKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSASFFES 371

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS-------------------------- 449
             +   + +   I + +D ++ + +L S + +                            
Sbjct: 372 KEVALALDICALIFNPKDIMAAIHIL-SCISDIGSNTAKDIHEALMLLGNGDLKLALTHP 430

Query: 450 ------------------EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKY 487
                              ++IF +         + +           K        +  
Sbjct: 431 SKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKTLSD 490

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNEQ 541
              L   A   SP      IL      Q F +R   E     D    EF  L    R  +
Sbjct: 491 FFTLYTKAPTHSPSALIKHILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNE 549

Query: 542 NSY--SSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                SSL +    L        I  + +     V +++VH +KGLE   V+++D     
Sbjct: 550 KMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGR 609

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F +  +                                         EE  RL YV +TR
Sbjct: 610 FPNHKLMNTGGG----------------------------------IEEERRLFYVAITR 635

Query: 658 ASDQLIICKHSNTSNEKKSNQRT 680
           A + L +    N   E    +  
Sbjct: 636 AKENLWLSYAKNELRENAKPKEH 658


>gi|257466895|ref|ZP_05631206.1| ATP-dependent nuclease subunit A [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918042|ref|ZP_07914282.1| ATP-dependent nuclease subunit A [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691917|gb|EFS28752.1| ATP-dependent nuclease subunit A [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 1007

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 120/891 (13%), Positives = 273/891 (30%), Gaps = 181/891 (20%)

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF-IKIRDRFNT 116
             +  +E        F        + + T+  +++   L+E+L +  + F   +      
Sbjct: 242 GEEEKQEILKHERDTFFKTNVFDGRKLSTRGKDEEILALREELLEELESFRCDLAKEVYN 301

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN-DLLKK-------RDVSAW 168
            +M     +   + + +   Y+  K+K  + +++D+ + T   L ++         ++  
Sbjct: 302 EEMIFFEESLFAIFEEIYTLYDTYKRKEKIFNYDDIAVYTYLTLFQEDLHFVEGNAITDT 361

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +   +D +I+ + +DE QDTS++QW+++ +  E            +++  VGDEKQSIY 
Sbjct: 362 LEEVLDLKIHSVFLDEFQDTSILQWKILSAFLE----------RAKSVICVGDEKQSIYG 411

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + G E K       I             +  L  S+RS + I+   +  F          
Sbjct: 412 WRGGEKKLFEDLPNIL---------DAKVENLDTSYRSLSSIVDFTNDFFKSFPLLYQEE 462

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                                 W+ + S+   +   +  S+    +   +          
Sbjct: 463 GID-------------------WQFLESKSHKKQRGEVLSYFVEEEEALE---------- 493

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
               +  +I                  + +L RK K    I+      K    I    + 
Sbjct: 494 ---KLGELIEEKYSG--------NYGSLSILARKNKTLLQISDFLEEKK----IPYQLSL 538

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV-- 466
           +    +   I   ++L R+  + +  L  V   +S +   S + + K+ T +        
Sbjct: 539 QKEYQEEATIDAFLSLFRYFCTGK-YLYLVEFFRSSVLQASNEILKKLLTGQENMIQYIY 597

Query: 467 ----YEYIQKFANCGISKFQHVIKYIHELIHIA-QFCSPHDFFTLILGAKKGRQQFISRF 521
               ++   K +    + +    +   ++  +                       +  + 
Sbjct: 598 SGKEWKEKPKGSQEVRTLYLEFQEKEGKIEDMWLHCIKLFSLTEYFNKDSHILACYSFQQ 657

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                D   E+       ++N   +L+                   + + +++M++H +K
Sbjct: 658 SLSYYDSWFEYFEA---FDKNQLVNLEAW--------------EEESKDAIQLMSIHKSK 700

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS-------KSRNNIVSD 634
           GLE   V   +       ++    +       D   +  +                   D
Sbjct: 701 GLEFDNVIYFEAKDSRKGNREQSILFYFQMAEDYRSLEHYFLTRGKYRKYMDYLPEPFPD 760

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            + +++K  +EE    LYV +TR    L +             + T              
Sbjct: 761 YLSNVEKKEREEEINTLYVALTRPKHNLYLFFSETWKGRDLVEELT------------PS 808

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
              + L  +    E    +      +    E ++  KQ  ++  +  +L           
Sbjct: 809 SSAMFLAENKGNREEKNQQGIVLDFQKEVKEFDKDEKQRPEKYTLLTELHRME------- 861

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                                       GL  H  L+ +    E + +        + A 
Sbjct: 862 ----------------------------GLATHFFLEHLKYATEEEIEFAKKRVIQEYAS 893

Query: 815 LWPAKEYKNLL--LSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRID 869
            +  ++ + L     I ++L+    +   S D    Y E S+    +           ID
Sbjct: 894 YFGREKIEALFSKDRIQQILKVD--SRIFSKDWDYIYPEFSIISPFDQK------KYIID 945

Query: 870 QISISQQN------IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
           ++ I +        +++ +YKT  + P+           QL  Y+ IL++ 
Sbjct: 946 RLMIKKAGKNKKGLVYLVDYKTGGNDPK-----------QLENYKHILQEL 985


>gi|312148305|gb|ADQ30964.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi JD1]
          Length = 1169

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 141/852 (16%), Positives = 266/852 (31%), Gaps = 113/852 (13%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET--ETVYEYIQKFANCGISKFQH 483
            + +  ++   +   +L S + N   +    +  Q      E   E I            +
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWNLQRILIKQDKIHLIEEFIENIIVLLEKNEITLIN 636

Query: 484  VIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
             I  I    +  I IA                  +   I     E +   +  L    + 
Sbjct: 637  AINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIISKI 696

Query: 539  -NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL++
Sbjct: 697  YHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLGMNIVFLLN 756

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
            T     S+   KK        D      +          + +  K+ +     E   + Y
Sbjct: 757  TTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNIFY 808

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VG TRA   L I K ++ +++     + +         N       K  N    +  +  
Sbjct: 809  VGATRAKFALFIIKINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFNKKKDNTNVNT 868

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
            +     P    + ++E                     +  E Y       + + + + E 
Sbjct: 869  KLIPPKPIIKNMFKKEYTSSFSSLTA------QAHHKEFYENYDFKNINYEKETELDYEP 922

Query: 773  LLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYK 822
             L +   +  + G I+H  ++ I                   I     K        E +
Sbjct: 923  GLEETLPKGKDIGNILHAAIEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNTIEIQ 982

Query: 823  -NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP----------------- 858
             +L   I  +L       N  +      +   E+    KIN                   
Sbjct: 983  NSLAKMIYNILTYNIRAINTRLCDV--EELQKEMEFLIKINPEFQKQKYLFDKHFEDLHI 1040

Query: 859  -KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIYE 908
               D  + G +D I  +   I+I +YKT++    + ++             +  Q  IY 
Sbjct: 1041 KLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQYKIYA 1100

Query: 909  KILKDS-YPNKS 919
              +K   + NK 
Sbjct: 1101 LGIKKILFKNKK 1112


>gi|32473647|ref|NP_866641.1| helicase [Rhodopirellula baltica SH 1]
 gi|32444183|emb|CAD74180.1| probable helicase [Rhodopirellula baltica SH 1]
          Length = 924

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 105/734 (14%), Positives = 227/734 (30%), Gaps = 69/734 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETG----NPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
            D+      +V ++ +   ++  +G         K      +++        F  L    
Sbjct: 244 ADVERWDQLKVPELPESADITRTSGMLRSAEVPQKSLVKALESAADSLEIRDFGPLVEAT 303

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           LT+    +  +  +E+          L    D   ++    +   +     A+ TL  + 
Sbjct: 304 LTKNIA-KARLHGEEVKFGRSKFPPGLDPEFDLIYEVARHESLSLLRAQNQATSTLVDHY 362

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
           +   +  K+    L F+D+ +    +  + D    ++ ++D  I+H+L+DE QDTS +QW
Sbjct: 363 DTLIQLVKQAQRALAFDDIAVRLAGVFTQLDNHT-LQDRLDASIDHLLLDEFQDTSPVQW 421

Query: 194 EVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           +V+R L +       D           ++ F VGD KQ+IY + G   +      +    
Sbjct: 422 QVLRLLAQSVTGESTDSSSNVLDPKRSKSFFCVGDTKQAIYGWRGGVAEIFDAVDKQIPG 481

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV- 305
             +             S+RS++ +L  V   F                   +++   +  
Sbjct: 482 IISKQQ--------DESYRSSSVVLDAVTDAFQHLPRHPMAEGSDPPNPADKATYEAKAL 533

Query: 306 -GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
               + + +  +        Q  +              +      A     ++       
Sbjct: 534 KRFAKRFPKHTAARKLPGFVQFRTAELNLKPPADSDEKTKSKPSAADIQKGLLDDVAKQI 593

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      I VL R       +      L     + V       L D +A++ +++ 
Sbjct: 594 AELHHQSPHLTIGVLTRTNSTVGALINRLEHL----DVDVSAEGGNPLVDSVAVRWILSA 649

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
                   D    + +  SPL       +  +     + E   +   +  + G+++    
Sbjct: 650 LMMCEHPGDGRWRLHIANSPL-----KFVLPLSDSDGKGEAADQLRARIEDQGLAQTILF 704

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           +                             +  +    +     L++ +  T   +  + 
Sbjct: 705 LA----------------------------KALMPHCDSRENVRLEQLIELTTLYQHTAD 736

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI- 603
           S L++ +  + +      RA       VR+MTVH +KGLE   VFL +    +       
Sbjct: 737 SRLRDFVELVHEKRVQRPRAA-----VVRVMTVHQSKGLEFDAVFLPEIHKALLGPSPQC 791

Query: 604 -KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
              +  +          +   Q          +      +   E   LLYV MTRA   L
Sbjct: 792 LADIPEIGQPARGLSRSVGEAQWHFLPKRWQAVFGGSVAARLTEAMCLLYVAMTRARQGL 851

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            +      + +K  N +T   ++Y ++  +            + D     +      + T
Sbjct: 852 YLVIP--PAGKKDFNNKTAASLLYHAWKCEADPTAEGEVLFESGDADWFGDSKVESVDET 909

Query: 723 PLEREETIKQLMDE 736
             E+E+   + +  
Sbjct: 910 KSEKEDVPTRRLSF 923


>gi|121605345|ref|YP_982674.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120594314|gb|ABM37753.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 1141

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/723 (14%), Positives = 204/723 (28%), Gaps = 116/723 (16%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
            I +                 S  +E            L             S + S   
Sbjct: 285 DIVRRFHDKLGLPAGPRLIDRSEGIEL--LEDELPRLPLHHYRNLWDPALDLSDMLSAIS 342

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
             K      +  + + +           +Q+            K  +           + 
Sbjct: 343 RAKDEVIDAVGYRALAQAM---------AQNCADDADATMRAEKCME--------VALVY 385

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             YE       ++DF DL+     L+   +  A +R  +     H+L+DE QD +     
Sbjct: 386 ETYERLMTAKQLIDFGDLVAQPVRLV---EADAEVRNALRARHKHVLVDEYQDVNRSSVR 442

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++++  D           R L+ VGD +QSIY F GA    + +               
Sbjct: 443 LLKAIVGD----------GRDLWVVGDARQSIYRFRGASATNMAQFTLDFP--------G 484

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             + +L +++RS  +++ V            G  + ST  +            V    +V
Sbjct: 485 AQVDQLGINYRSRQEVIDV-------FTAFSGTMKASTGALPLHLKASRGASGVTPDFRV 537

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
           VS  + + +    +  +  D+                                      +
Sbjct: 538 VSTTNDEISAIAAAIQAQRDAGTA----------------------------------YR 563

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           +  +L         I            I V+      L +   IKDL+AL   +      
Sbjct: 564 EQALLCASNARLSEIAEGLEA----RGIPVLHLG--SLFERPEIKDLLALLSMLNDPYA- 616

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
           +  V     P +     DI +I  +  E++      +   N            +  +  +
Sbjct: 617 VGLVRASTMPSYELPLQDIAQIIERLRESKVAALDWRLAGNWPPELAGTSNATLARVAAL 676

Query: 495 AQFCSPHD-----FFTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSS 546
               SP         T ++      +        +       L +FLNF  +    + + 
Sbjct: 677 FDGMSPTGNPWTILSTWVIDRLGLAKVLYLADDAQSRMKGLALWQFLNFCRQQPSGAGAP 736

Query: 547 LQELISEL-------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
              L+  +       E              + VR+MT+H +KGLE   V +    +    
Sbjct: 737 CTRLLDRIRRLVLLSEDRGLRHLPGVVDGIDAVRLMTIHASKGLEFHTVHIPGMVTSGLP 796

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             ++    + P         I               ++ +K   +EE   L +V ++RA 
Sbjct: 797 RNNMAPRCVPPDGLIHGSDGITG-------------LEAVKSGHEEEEECLFFVALSRAR 843

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           D+L +   S  S+ +  N   +   +     +     +            +A+       
Sbjct: 844 DRLFLYASSVQSDGRARNPSKFLTSIRHLLIHSPNPPQRSAKLRAKACLQVAWAQKPVWT 903

Query: 720 ENT 722
           ++ 
Sbjct: 904 DSQ 906


>gi|78779497|ref|YP_397609.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus
            marinus str. MIT 9312]
 gi|78712996|gb|ABB50173.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus
            marinus str. MIT 9312]
          Length = 1208

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 120/869 (13%), Positives = 262/869 (30%), Gaps = 141/869 (16%)

Query: 100  LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND- 158
            LK    +F  ++D+    K    T       +       E KK   + +F DLI  T + 
Sbjct: 325  LKLDFTKFNLLQDKIYKIKEGFYTEFVRIFTQLAYIKLIELKKSFSIFNFNDLI-KTVEN 383

Query: 159  -LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
              L     ++    KI +    +L+DE QDT   QW +I+            ++    L 
Sbjct: 384  KFLDSEISNSITLSKIQKNFKCVLVDEFQDTDNTQWNLIKKFF---------NTKNHFLL 434

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
             VGD KQ+IY F G + +  L  +               +  L  ++RS+ +++ V++K+
Sbjct: 435  CVGDPKQAIYKFRGGDIETYLDAR----------SNAIEVFSLTDNYRSSKNLIDVLNKL 484

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            +        L+       R  +SRI +    +   + V +       + +          
Sbjct: 485  YKNGLKQSKLNY------RKLTSRINENINSEFKFKDVFEIVEFSKKETD---------- 528

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                           I +++    +      + I    I +L              +   
Sbjct: 529  ---------------IEDLVTHYIVNFILNNKEIDINKIAILTLNNSQCLD----LKKKL 569

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            N + +     ++  + D  A   L      +L+     +   +  S       +++    
Sbjct: 570  NQFNLPCKIQNKQNIFDTEASSLLFLFIECLLNPRFLKNITLLAASKFIEIELEELLDDG 629

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               +    +    +        K +  +  ++EL+      S      L     +  +  
Sbjct: 630  ISNNLEILI---NKCITWSQELKEKGFLNIVNELLINYNSSSIIQDLDLNSNLFQLSEIV 686

Query: 518  ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                        D  LN      +N    +  + S                 N + + T+
Sbjct: 687  EIELM-----NNDFNLNKVFNWYKNQLDHILRICS-----GEDFLTKDYNLQNGINLSTI 736

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
            H++KGLE  +V        + S+K  K    +   N D  I I I  + ++   V     
Sbjct: 737  HSSKGLEFEIVLCPYLS--IISNKSNKIKGPLWKSNIDRNIYINISNNYAK---VEKFKL 791

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE----------KKSNQRTWYDMVYD 687
              ++   +E  RL+YV +TR+  +LI+      +N           +  N          
Sbjct: 792  IEEEDLFKESERLIYVALTRSKYKLIVFNDLEDTNNILNIDLLNNLENINNYKSTFEDRI 851

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWS---THHPENTPLEREETIKQLMDEQKIPKKLF 744
                 + +     T  +N + W  + ++   +    +       +    + + K    + 
Sbjct: 852  EKEKIKEIFAKFQTKRLNNNLWKIHNFNKKISKEFNSDQFISYSSYSSWISKDKNIDAVI 911

Query: 745  SPIKNDINEPYILNPSTIDTKGKTN-----LESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            +  K+  +   I+  S +               L    +    G  +HK+++       +
Sbjct: 912  NQYKDYEDNISIIKESNLRKSMNYPNYFSYPNPLSEFPKGTIAGTCLHKIIERFEFRNNN 971

Query: 800  KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA------------------- 840
             ++         N           +  +I R++   + +                     
Sbjct: 972  NQELIDLIIEELNFHQIDTSLAFKVKDAILRIINLSLGSELQNKKLVDIPNDYLIKELKY 1031

Query: 841  ---MSCDSYS--------------EVSVSGKINCPKKDIII------SGRIDQIS----- 872
               +S +  +              E     +      D+ I      SG ID +      
Sbjct: 1032 DLTLSYEGRNINSYDISKCFLLDQEYEFGEEYANKINDLQIMNKGFHSGCIDCVFPVGNK 1091

Query: 873  ISQQNIFIFEYKTHHHVP-QEIEHIPYTH 900
            +     ++ ++K++        + +P  +
Sbjct: 1092 LEDSKWWVIDWKSNFISGIDNSDCLPRNY 1120


>gi|224000571|ref|XP_002289958.1| UVRD/Rep like helicase [Thalassiosira pseudonana CCMP1335]
 gi|220975166|gb|EED93495.1| UVRD/Rep like helicase [Thalassiosira pseudonana CCMP1335]
          Length = 698

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/523 (14%), Positives = 166/523 (31%), Gaps = 134/523 (25%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            +     +   +   +++ K     +DF+DLI+ T +LL        +R  + +   HIL
Sbjct: 253 MSRKVRQIVTQIRVPFQKVKYSQNSVDFDDLILLTRELLLNHPE---VREILHRRWRHIL 309

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDTS +Q +++R LT +            +LF VGD  QSIYS+ GA P+ +   +
Sbjct: 310 VDEFQDTSQVQLDLVRLLTTN------------SLFVVGDGDQSIYSWRGASPESMSDFE 357

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                +          + L  ++RST +I+    KV S  +  +G               
Sbjct: 358 VAFHDQMH-----VKSVYLMENYRSTTNIVKAAQKVISTSDGHRGSQNKD---------- 402

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                                                  +++   + +  ++++MI +  
Sbjct: 403 -------------------------------------SDASAQDTKFVVTSVNSMIESGD 425

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
           +  +          + ++ R    + LI          Y   VV            I+D 
Sbjct: 426 LTPS--------STVAMIYRTNAQSRLIEEACVEQNLRY---VVRGSSGTFYKRAEIQDC 474

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ---------------------- 459
           M   + + +  D  ++   +K+P     +  + +                          
Sbjct: 475 MCFLKIMYNGRDRSAWARAVKAPSRGIGDTSLEEFFRYCDAITDKYTEISNDGSSPPTPM 534

Query: 460 -------------RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                          +   +       +   +++F      ++ L   A+  S ++F   
Sbjct: 535 DVMMSLARSNSGEEKDIGMLIPPKDFLSTRSLNRFIPFASSLYSLREKAKVQSVNEFLLS 594

Query: 507 ILGAKKGRQQF-----ISRFGNEVIDVLDEFLNFTLRNEQNSY------------SSLQE 549
           ++     +  F           + +  + E +    R + +              ++L  
Sbjct: 595 VIDDLMLKTHFDAISKTRDEYEDRLSNVMELIRAADRYKDDGPCIVGDLNGETVETALGN 654

Query: 550 LISELEQYPPTIKRAHSANHNEVRI----MTVHTAKGLESPVV 588
            + ++               +  R+    MT+H++KG+E   V
Sbjct: 655 FLDDVALIADIAPDDAEVEGSGGRVVANLMTIHSSKGMEFDAV 697


>gi|296130311|ref|YP_003637561.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
 gi|296022126|gb|ADG75362.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
          Length = 1076

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 108/1014 (10%), Positives = 258/1014 (25%), Gaps = 178/1014 (17%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYV----SLSMETGNPTILKKAQTLQQA 56
            L++R  + L  +         P   F V           +  + +G    +  A+ L   
Sbjct: 91   LRDRLAVRLGRTAGRPLVQTAPAVAFAVLRARAGALGEPAPVLVSGPEQDVALAELLAGH 150

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
            +  +     +             P+  +  +       +L++ L ++ +    +      
Sbjct: 151  ASGEVPGPAWPA---------SVPEAALGARAFRD---ELRDLLMRAAER--GLTPADLA 196

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKK-KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                +    +   A  +   Y +         D         + L    V       +  
Sbjct: 197  ALGRREHRPAWVAAARVYEEYLDVMALAAGTPD-------AGERLDPAVVVDAAVAALRA 249

Query: 176  -----------EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                           +++D+ Q+++     ++R+  +              L  +GD   
Sbjct: 250  WDEEVPGVPCPRRRLVVVDDHQESTTATARLLRAFAD----------GGAHLLLLGDPDV 299

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            ++ +F GA+P  +                  + + L   +R T  +  V  ++      +
Sbjct: 300  AVQTFRGAQPTLLAAA----AAPTGPGASGAAHVVLRTVWRQTGPLREVTARITERVPTS 355

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
              +     +    R+   G    V +                              SA+ 
Sbjct: 356  GTVVHRRASVPPERA--DGPAPRVAVLP----------------------------SAAQ 385

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             A  +AY +                 +  +++ VL R            R       + V
Sbjct: 386  EAAWVAYRLRRAHLQG---------GVPWQEMAVLARTGSRA----TALRRALAQAGVPV 432

Query: 405  VGNDRF-ILTDHLAIKDLMALGRFILSQE--DDLSFVCMLKSPLFNFS-----------E 450
                    L D  A++ L+   R  L+ +  D      +  SPL                
Sbjct: 433  RVVGSDVPLRDEPAVRPLLDAVRVALAPDELDAEVAARLACSPLGGLDAVGLRRVRRALR 492

Query: 451  DDIFKICTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIA--QFCSPHD 502
             +       R     + E + +               Q +   +      A         
Sbjct: 493  AEELAGGGGRSSDALLVEALAEPGRTATLEPHVGRPVQRLATLLQAGRDAAAVPGADVQA 552

Query: 503  FFTLILGAKKGRQQFISR------FGNEVIDVLDE---FLNFTLRN-EQNSYSSLQELIS 552
                +       + +          G      LD             E+   ++ +  + 
Sbjct: 553  VLWAVWDRAGLAEPWRRSALAGGAGGERADRDLDAVLALFRAAETFVERMPQAAPRAFVD 612

Query: 553  ELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             +          A ++    V ++T   A G    VV +V     V+       + +  S
Sbjct: 613  WVMAQDLPADSLAPASRAAGVSVLTPAGAAGGSWEVVAVVGVQEGVWP-----DLRLRDS 667

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
            L     +   +    +      +  +  + +   +  R   +  +RA   L++       
Sbjct: 668  LLGAQTLVDLLAGRATAGGPGEEHARAARAAVLADELRAFALACSRARTLLLVTAV---- 723

Query: 672  NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI- 730
            +++ +    + D+V     +D    +     +      +               R +   
Sbjct: 724  DDQDATPSPFLDLVQPGADDDGPDPRRTSAPAPLDLRGLVARLRGVLERAALEGRTDERA 783

Query: 731  --------------KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                                  +P+               ++PS ++T  +  L   L  
Sbjct: 784  ARTLARLAAHGVPGADPASWFGLPEPSSDDPLWPAEVKVPVSPSRLETAQRCTLRWALEA 843

Query: 777  NQTF-------NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                       + G ++H + Q   T      +  +     + A                
Sbjct: 844  AGGTPASSAQQSLGTLVHAIAQDHPTADLPTLRAELDRRGAELALG-DGWPAVAARRKAD 902

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS---ISQQN----IFIFE 882
             +L    +   +   +   + V           ++ G ID++    +        + + +
Sbjct: 903  AML--ERLAAYL-RGAGEPLLVEAPFAVETDRAVVRGSIDRVERALVEGDGASGAVEVVD 959

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKD-----SYPN-KSLVCLLIYVSEP 930
             KT   VP           AQL  Y+  +         P   S+   L++++  
Sbjct: 960  LKTGSRVPS---VAQAAEHAQLGAYQLAVDAGAVPGLAPGTHSVGARLVHLAHG 1010


>gi|282898173|ref|ZP_06306164.1| UvrD/REP helicase [Raphidiopsis brookii D9]
 gi|281196704|gb|EFA71609.1| UvrD/REP helicase [Raphidiopsis brookii D9]
          Length = 785

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 92/635 (14%), Positives = 188/635 (29%), Gaps = 69/635 (10%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK-EKLKKSQDEFIKIRDRFNTYKMF 120
               + LL       + T +    +    +  PDL    + +++   I     +   +  
Sbjct: 168 PTMYYRLLEGHQFDGEETERLRRQSVLRTEILPDLAYTTIHEAKSSGIVPETLYQWSEKT 227

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +++   L +A  L   YE+  K   ++D++D+I+   ++ K              +I  +
Sbjct: 228 QNSYQVLRIAAGLYEEYEKLMKSQGLIDYDDMILAALEVFKNPGA----LGIEKNKIFAV 283

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLR 239
             DE QD+S +Q +++  L E+     N   +   L  VGD  Q+I S F  A+P     
Sbjct: 284 FEDEAQDSSQLQTQLLEILAENKD--GNGEKTTLNLVRVGDSNQAINSTFTPADPIYFRE 341

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +           +  +  +  + RS+  I+   + V                + +   
Sbjct: 342 FCQQ-------CAGEQRLATMNQAGRSSRIIIDAANFVLEWVNQQWSKRNLQNHSPKKLP 394

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
               ++  V + +      +     +     +  D              I   I  +   
Sbjct: 395 FINQKIQVVNIGDPQT-DANPAPAGKGLELHTPDD-------IHHTVELIGQKIVELFKN 446

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                             +LVR+ +    +      +   + I +       + +     
Sbjct: 447 ------------NVGTAAILVRENRQGKWLAENIEPICKQHHIELY-----EVAETERHS 489

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCG 477
            +      +L   D       LK+ L    +  +              E+     F    
Sbjct: 490 QVPKEILALLQFCDRPHSQDFLKTALTVLMQRQLIAAQDVNSLAILPEEFLYPTPFTKVQ 549

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
               +   +    L+  A    P+     +  +    Q  ++       D L E +N  +
Sbjct: 550 TEIVKEAAQLCRNLLQAAWEIPPYQIIYFLASSLNYDQGELAT-----ADKLAEKVNLQI 604

Query: 538 RNEQNSYSSLQEL-----ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +++  S +  L       + E        A      ++ I+T+H AKGL+   VFL  
Sbjct: 605 TGDRSRSSLITALVEIVNSEKFEAVDTENPEAKYIKKGQLTIITMHKAKGLDWDYVFLPF 664

Query: 593 TGSQVFS--------HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN---------IVSDL 635
               V           + +    +           +       +N           +   
Sbjct: 665 LHENVIPGKLWVKPQGQFLGDFSLAEVARAQIRTALHQGTETKQNANHNSNKSLFELKQA 724

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
            +  K     E  RLLYV MTRA   L +      
Sbjct: 725 WEEAKDLKLAEEYRLLYVAMTRAKKLLWMSAAKKA 759


>gi|221217840|ref|ZP_03589307.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 72a]
 gi|221192146|gb|EEE18366.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 72a]
          Length = 1169

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 138/853 (16%), Positives = 268/853 (31%), Gaps = 115/853 (13%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               N     + I L ++ RS+  ++  ++K+F+        +      I           
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNI-----YNNAIADEIEKIDFTNSLP- 469

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                        +++   + +             S   + ++ A TI  ++    I  N 
Sbjct: 470  -------NQKNDNNKIVIKGQEIEGINIITTNTESEEDIYQKTALTIKYLLAYGKIAENN 522

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            K R I+ +DI VL R + +  LI    +  +           +          ++  + +
Sbjct: 523  KIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYIIK 577

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK----FQ 482
             +  ++   +   +L S + N   +   +    + +   + E   +     + K      
Sbjct: 578  CLDRKQSFKTLNYILSSKILNVPWN--LQRILIKQDKICLIEEFIENIIVLLEKNEITLI 635

Query: 483  HVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            + I  I    +  I IA                  +   I     E +   +  L    +
Sbjct: 636  NAINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIISK 695

Query: 539  --NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
              +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL+
Sbjct: 696  IYHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLGMNIVFLL 755

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
            +T     S+   KK        D      +          + +  K+ +     E   + 
Sbjct: 756  NTTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNIF 807

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YVG TRA   L I K ++ +++     + +         N       K  N    +  + 
Sbjct: 808  YVGATRAKFALFIIKINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFNKKKDNTNVN 867

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
             +     P    + ++E                     +  E Y       + + + + E
Sbjct: 868  TKLIPPKPIIKNMFKKEYTSSFSSLTA------QAHHKEFYENYDFKNINYEKETELDYE 921

Query: 772  SLLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEY 821
              L +   +  + G I+H  ++ I                   I     K        E 
Sbjct: 922  PGLEETLPKGKDIGNILHAAIEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNTIEI 981

Query: 822  K-NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP---------------- 858
            + +L   I  +L       N  +      +   E+    KIN                  
Sbjct: 982  QNSLAKMIYNILTYNIRAINTRLCDV--EELQKEMEFLIKINPEFQKQKYLFDKHFEDLH 1039

Query: 859  --KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSIY 907
                D  + G +D I  +   I+I +YKT++    + ++             +  Q  IY
Sbjct: 1040 IKLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQYKIY 1099

Query: 908  EKILKDS-YPNKS 919
               +K   + NK 
Sbjct: 1100 ALGIKKILFKNKK 1112


>gi|225548947|ref|ZP_03769924.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 94a]
 gi|225370550|gb|EEG99986.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 94a]
          Length = 1169

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 139/854 (16%), Positives = 269/854 (31%), Gaps = 117/854 (13%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK----F 481
            + +  ++   +   +L S + N   +   +    + +   + E   +     + K     
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWN--LQRILIKQDKICLIEEFIENIIVLLEKNEITL 634

Query: 482  QHVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             + I  I    +  I IA                  +   I     E +   +  L    
Sbjct: 635  INAINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIIS 694

Query: 538  R--NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            +  +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL
Sbjct: 695  KIYHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLGMNIVFL 754

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            ++T     S+   KK        D      +          + +  K+ +     E   +
Sbjct: 755  LNTTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNI 806

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             YVG TRA   L I K ++ +++     + +         N       K  N    +  +
Sbjct: 807  FYVGATRAKFALFIIKINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFNKKKDNTNV 866

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
              +     P    + ++E                     +  E Y       + + + + 
Sbjct: 867  NTKLIPPKPIIKNMFKKEYTSSFSSLTA------QAHHKEFYENYDFKNINYEKETELDY 920

Query: 771  ESLLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKE 820
            E  L +   +  + G I+H  ++ I                   I     K        E
Sbjct: 921  EPGLEETLPKGKDIGNILHAAIEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNTIE 980

Query: 821  YK-NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP--------------- 858
             + +L   I  +L       N  +      +   E+    KIN                 
Sbjct: 981  IQNSLAKMIYNILTYNIRAINTRLCDV--EELQKEMEFLIKINPEFQKQKYLFDKHFEDL 1038

Query: 859  ---KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSI 906
                 D  + G +D I  +   I+I +YKT++    + ++             +  Q  I
Sbjct: 1039 HIKLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQYKI 1098

Query: 907  YEKILKDS-YPNKS 919
            Y   +K   + NK 
Sbjct: 1099 YALGIKKILFKNKK 1112


>gi|225550058|ref|ZP_03771019.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 118a]
 gi|225369517|gb|EEG98969.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 118a]
          Length = 1169

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 139/854 (16%), Positives = 269/854 (31%), Gaps = 117/854 (13%)

Query: 127  LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              + KY+    E+  K    +D   +I N  + LK  D    +   I      ILIDE Q
Sbjct: 315  YKILKYIEKELEKTIKSTNTIDQNYIISNLKNYLKSED--KKLLNAIKNRYKIILIDEAQ 372

Query: 187  DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
            D SLIQ E+ + L           ++   L  + D KQ IYSF  A+            K
Sbjct: 373  DLSLIQIEIFKIL----------KTAGIKLIFIADPKQIIYSFRKADISF-------YNK 415

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSEDSTTTIRHRSSRIGQV 305
               N     + I L ++ RS+  ++  ++K+F+    NA     +         ++    
Sbjct: 416  EIKNKINTDARIVLKINHRSSKKLIGPLNKIFNNIYNNAIADEIEKIDFTNSLPNQKNDN 475

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              + +               +       ++  +E      A     TI  ++    I  N
Sbjct: 476  NKIVI----------NGQEIEGINIITTNTESEEDIYQKTA----LTIKYLLAYGKIAEN 521

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             K R I+ +DI VL R + +  LI    +  +           +          ++  + 
Sbjct: 522  NKIRNIKMQDIKVLCRGKNEINLIDKALKKEQIQTN-----KTQEKFLKTKEFSEIFYII 576

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK----F 481
            + +  ++   +   +L S + N   +   +    + +   + E   +     + K     
Sbjct: 577  KCLDRKQSFKTLNYILSSKILNVPWN--LQRILIKQDKICLIEEFIENIIVLLEKNEITL 634

Query: 482  QHVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             + I  I    +  I IA                  +   I     E +   +  L    
Sbjct: 635  INAINKITFEKNLWIKIANITKDQKIIEWAKNKINYKGLLIKEGKLENLKTYETTLEIIS 694

Query: 538  R--NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            +  +++ +  SL   +  L      +         + ++  + +MT+H +KGL   +VFL
Sbjct: 695  KIYHKEQNIQSLISTLESLIINEEPEEIEEKINNINNDNESIELMTIHKSKGLGMNIVFL 754

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
            ++T     S+   KK        D      +          + +  K+ +     E   +
Sbjct: 755  LNTTPIENSNFFSKKNQFYKFYQDGKIEYDFFK--------LEENKKYARLKILSEEKNI 806

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             YVG TRA   L I K ++ +++     + +         N       K  N    +  +
Sbjct: 807  FYVGATRAKFALFIIKINSITSKLLEIAKIFTIDDIKHDFNIHEFIGQKRFNKKKDNTNV 866

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
              +     P    + ++E                     +  E Y       + + + + 
Sbjct: 867  NTKLIPPKPIIKNMFKKEYTSSFSSLTA------QAHHKEFYENYDFKNINYEKETELDY 920

Query: 771  ESLLSD--NQTFNRGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKE 820
            E  L +   +  + G I+H  ++ I                   I     K        E
Sbjct: 921  EPGLEETLPKGKDIGNILHAAIEEIIFSTAKDTFDNFKKNNIEIIEKQIQKINSNLNTIE 980

Query: 821  YK-NLLLSITRLLE------NPMMTTAMSCDSYSEVSVSGKINCP--------------- 858
             + +L   I  +L       N  +      +   E+    KIN                 
Sbjct: 981  IQNSLAKMIYNILTYNIRAINTRLCDV--EELQKEMEFLIKINPEFQKQKYLFDKHFEDL 1038

Query: 859  ---KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI---------PYTHIAQLSI 906
                 D  + G +D I  +   I+I +YKT++    + ++             +  Q  I
Sbjct: 1039 HIKLSDGYLKGIVDLIFKANNKIYILDYKTNYLGKNKEDYNITNLENTIKKEYYDLQYKI 1098

Query: 907  YEKILKDS-YPNKS 919
            Y   +K   + NK 
Sbjct: 1099 YALGIKKILFKNKK 1112


>gi|320108905|ref|YP_004184495.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
 gi|319927426|gb|ADV84501.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4]
          Length = 1126

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 125/928 (13%), Positives = 258/928 (27%), Gaps = 144/928 (15%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            + +E  E I +                  L +     T L   +      +     E   
Sbjct: 252  AASEMGERIARKHREAAAAMWVGTFHAFGLDLVRRFFTELGLPRD----PRMMDRTEAVE 307

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD--RFNTYKMFKSTLA 125
            LL   F +      +NI      +   ++   + +++DE +   +  R            
Sbjct: 308  LLEDRFPSFNLRHYRNIYDP--TQIITEILTAISRAKDEVVDAEEYARLAGSMGSSEAAE 365

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                   +   YE  K+    +DF DL++    LL+       IR  I    +H+++DE 
Sbjct: 366  RAAEVAQVYGAYERLKRDANCVDFGDLVLLPVRLLETSPD---IRSHIQSLYDHVIVDEY 422

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE-KRIN 244
            QD +     ++ +L                L+ VGD KQSIY F GA P  ++R   +  
Sbjct: 423  QDVNRSSTRLLAAL----------KPDGHNLWVVGDAKQSIYRFRGASPFSMMRFGTQDF 472

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                           L  ++RS+A+I+      FS       L   S             
Sbjct: 473  P--------GAKRERLGQNYRSSAEIVNA----FSTFAATMRLGAGSRAL-------HAD 513

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             G   +  +++    ++                        A  +A +I  +        
Sbjct: 514  RGPNGIHPKLLCVRRAE----------------------QQAVALADSIQVLRSEG---- 547

Query: 365  NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                  +  ++  VL    +    +      L     I V+      L +   +KDL++L
Sbjct: 548  ------LTYREQAVLCTGNEKLSTLARELEVL----GIPVLFLG--SLFERPEVKDLLSL 595

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
               ++ +      V +   P F     D+         TE       +  +         
Sbjct: 596  LSVLIDRRAMG-LVRLGCWPEFKMQFADVAATLEFLRLTEVSPGAWLQSVDGIPKITDQG 654

Query: 485  IKYIHELIHIAQ-----FCSPHDFFTLILGAKKGRQQF---ISRFGNEVIDVLDEFLNFT 536
             + +  L                  TL+L   +   +    ++         + +FLNF 
Sbjct: 655  ARALTSLGVALHGFDQSSSPWTVLVTLLLDHTRMAARLGSSVNIADRSRAIAIWQFLNFL 714

Query: 537  LRNEQNSYSSLQELISEL-------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                      +  L+  +       +          +   + VR++T+H AKGLE     
Sbjct: 715  RVQPSGQGLPITRLLDRVRRLVRLGDDRDLRQLPNAAQGLDAVRLLTIHGAKGLEFSATH 774

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +    +                       PI  P         +  ++  ++   EE   
Sbjct: 775  IPGVNADTIPRVSS--------------APICPPPEGMIQGATASSLETYREGQVEEQEC 820

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            L YV ++RA   L+       SN       ++ D +  +      V +  +  +  +   
Sbjct: 821  LFYVALSRAKGHLLFYAPMEKSNGHNRPLSSFLDRIGTTLIRTVVVPQRSIPEAAEEAAL 880

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                          +   E+  +      I +           + +      + T     
Sbjct: 881  QIVFDGPMRFGAPQIALYESCPRRFFYTHILQVGGRRTSTAFMKMHDAVRMILATLIIDG 940

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
              +   D                        R                 +     L  + 
Sbjct: 941  KPAGPEDL---------------------EDRIEAALKTVELADHGHRNEFSALALTMLR 979

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
              +              +EV V+  +    ++I++    D +    Q+  +   +T H  
Sbjct: 980  YFVSTQEGCA-------NEVPVAINLKFGDEEIVVRAD-DILIRPDQSRVVRRIRTGHLR 1031

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              E + +        + +   ++ ++P+
Sbjct: 1032 SSETKDVGA------AAFVLAVQQAFPD 1053


>gi|225387724|ref|ZP_03757488.1| hypothetical protein CLOSTASPAR_01494 [Clostridium asparagiforme DSM
            15981]
 gi|225046187|gb|EEG56433.1| hypothetical protein CLOSTASPAR_01494 [Clostridium asparagiforme DSM
            15981]
          Length = 1126

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/672 (15%), Positives = 210/672 (31%), Gaps = 155/672 (23%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +  E    + + +      +   I  + S+  +     + K+      A +++ +E    
Sbjct: 570  AAEEMRIRLEEKMGGKQAVKKLQIGTFHSICFDL----LRKQGLEFLMADESEMLEIARE 625

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             + +  L+ K +     I+ +    +P+  E   + Q+   +     +     + T A L
Sbjct: 626  AIRAEGLSIKPSRLLRYISLKKAGSAPE--EVEAEMQEAEQEEMQAGHASAPSQPTRAQL 683

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              A     +Y++   +   LDF       +DLL K    A       +  +++L+DE QD
Sbjct: 684  EAAA---ENYQQGLAQIGALDF-------DDLLLKALELAEQSKMEPEAFSYLLVDEFQD 733

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
             + +Q+ +IR+           +   R LF +GD  Q+IYSF G + K   R +      
Sbjct: 734  INPVQYRLIRAW----------NRGGRELFVIGDPDQAIYSFRGTDAKCFERLEAD---- 779

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     +I L  ++RST  +L     V S+   ++   + +                
Sbjct: 780  ----ETGLEVIRLEQNYRSTPQVLAAAQAVISVNPGSRPCLKAN---------------R 820

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             + +   V     +                        A  +A  I+ +IG   +    +
Sbjct: 821  GEGYPVRVVTATGEMAE---------------------AIFVAKEINRLIGGIDMLDAQE 859

Query: 368  -------KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                   +R     +I VL R  +   L+    R       I  V   R    +  +++ 
Sbjct: 860  GFSCPDDRRPRSFAEIAVLYRTHRQADLLEKCLR----REGIPYVVAGRDEYLEADSVRG 915

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
             +   R +    D LS   +    L+   ED I                           
Sbjct: 916  TICFFRCLADPSDGLS-RRLCLKLLWGLGEDCISDCV----------------------- 951

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                   + +     +   P       +          +         + + ++ ++   
Sbjct: 952  ---FQSMVDKYKKQIKKVRPQKLLDSWI----------ADLDLTEDAAVQKLVSTSVFY- 997

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              + S   E ++   +         S   + V +MT+H +KGLE PVV L      +   
Sbjct: 998  -KNMSEFLENLTFGRESDLKRCGKKSYTADAVTLMTLHGSKGLEFPVVLLYGARKGLIPL 1056

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
            ++      +                                   EE  RL +VGMTRA +
Sbjct: 1057 ENGNGRIDV-----------------------------------EEERRLFFVGMTRAKE 1081

Query: 661  QLIICKHSNTSN 672
            +LI+      S 
Sbjct: 1082 ELIVTTSPEPSP 1093


>gi|315503767|ref|YP_004082654.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315410386|gb|ADU08503.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 1250

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 117/1038 (11%), Positives = 271/1038 (26%), Gaps = 223/1038 (21%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQA--SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89
                S  + TG    L   + L                 L     T              
Sbjct: 225  RGEPSPRLLTGPEQDLIIRELLDVVGEEPGDDPVGWPEDLRPALRT-------------- 270

Query: 90   NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC---- 145
               +  L++ L ++ +  +   +     +      A    A      Y            
Sbjct: 271  RAFAQQLRDLLMRAAERGVGPVELARLGEKLGR--ADWPAAARFLREYVAVLALRDVSNR 328

Query: 146  ---VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
                 D  +L+     +L        +     + + H+ +DE+ DT   Q +++  +   
Sbjct: 329  GSVAYDPAELVRAATGMLLDDPE---LLAAERRRLTHVYVDELADTDPAQLDLLAVVAG- 384

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                       R+L A  D   S Y+F GA+P  V       +   T +G   + + L  
Sbjct: 385  ---------GGRSLVAFADPDSSTYAFRGADPAGVTTFPHRFR---TASGAPAAQVTLTT 432

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            S+R+  ++L    ++        G         R         GTV++     +  +S  
Sbjct: 433  SYRAGPELLAATARLARRLRGPAG-------HRRLHPLPGVPAGTVEVLTFRSATSES-- 483

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                                          +++ +    +        +    + VLVR 
Sbjct: 484  ----------------------------AWLAHALREAHLLD-----GVPWSRMAVLVRS 510

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE--DDLSFVCM 440
                  +  L R L      +VV  +   L    A+  L+ L R  L  +  D+ + V +
Sbjct: 511  T--GRQLPSLRRALHTAGVPTVVHGEDLPLHLQPAVAPLLLLLRCALEPDRLDEEAAVAL 568

Query: 441  LKSPLFNFSEDDIFKICT-----------QRHETETVYEYIQK------FANCGISKFQH 483
            L SPL         ++             +R   E + E ++             +  Q 
Sbjct: 569  LHSPLGGADPLAERRLRQGLRALALAAGDRRPSGELLVEALRDPAELATIERRWAAPAQA 628

Query: 484  VIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFI-----------------SRFGNE 524
            V   +      A     +  D    +       +++                        
Sbjct: 629  VAHLLATARETAGRPGATVEDVLWAVWRESGLAERWAGAITRGRAATGEHETAQRWRAEA 688

Query: 525  VIDVLDE---FLNFTLRN-EQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVH 578
                LD      +   R  ++   +  +  +  +  ++ P     A +   + VR++T H
Sbjct: 689  ADRDLDAVLVLFDAAARFTDRLPGARTEVFLDHVLGQELPADTLAAAADRGDAVRLLTAH 748

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             AKGLE  +V +      V+    ++   +           + +   ++    +   +  
Sbjct: 749  AAKGLEWDLVAVAGVQEGVWPDLRLRGSLL------GSERLVDVLAGRADGAGLRASLVG 802

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERV 695
               +  +E  RL +V ++RA  +L++   ++     ++ +     +   +  +       
Sbjct: 803  QTSALLDEERRLFHVAISRARRRLLVTAVASAAVGGDDHEEQPSRFLHELAAADPPATGG 862

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                 T              T +       R   +   +       +   P    +  P 
Sbjct: 863  GGTAPTGPAPNGPNPNGPNPTGNGPTRTATRGGIVDGPVPHGDEHPQDGPPAALPVTLPP 922

Query: 756  I---LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF-------- 804
                L+    + +      +     +    G +       +                   
Sbjct: 923  RGLTLSALVAELRTAVTDPATPITRRHAAAGELARLAAAGVPGAHPDDWWGLRGLSDDRP 982

Query: 805  ----------------------ITSYCTKNAKLWPAK---------------------EY 821
                                  +     ++    PA                      + 
Sbjct: 983  LVDEGEPVRVTPSAMESALRCSLRWLLERHGGSGPASAAQGVGNLVHAAAMLAEDASVDR 1042

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYS------------------------EVSVSGKINC 857
            + LL  +    +   +                                  E   + +++ 
Sbjct: 1043 EALLEYVAARFDAIELAARWMAGPERQRAEAMVDKLLRWLAGNPRRLLAIEHEFAVRLDD 1102

Query: 858  PKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK---- 912
            P + + ++GR+D++ +     + + + KT          +      QL  Y+  ++    
Sbjct: 1103 PSRPVELTGRVDRLEVDDEGRLVVIDLKTGKSTAVTEREVAEH--PQLGAYQAAVEAGGF 1160

Query: 913  DSYPNKSLVCLLIYVSEP 930
              +  +     L+ +   
Sbjct: 1161 AEFGEEPGGAALVQLGTG 1178


>gi|257470506|ref|ZP_05634596.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
 gi|317064713|ref|ZP_07929198.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
 gi|313690389|gb|EFS27224.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185]
          Length = 617

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/532 (15%), Positives = 167/532 (31%), Gaps = 134/532 (25%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y   KK+  + DFEDLI      LK   V       + ++  +I++DE QDT+ +Q E +
Sbjct: 203 YRRFKKEFQMYDFEDLIEKVLRKLKTDKV---FLELLREKYKYIIVDEYQDTNSVQREFL 259

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L            +   + AVGD+ QSIY F GA+ + +LR  +              
Sbjct: 260 KMLAG----------TNGNIMAVGDDYQSIYGFRGADFENILRFGKDFPNS--------Q 301

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           +I+L  ++RS+ +I+   +K+                                L +   +
Sbjct: 302 MIKLEKNYRSSDEIIEYTNKISKKF----------------------------LLKYNKN 333

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              +    ++     + +   Q          I   I  +              I  +++
Sbjct: 334 VKGTMKKGEKPHVIGFLNEEKQG-------EYICRKIEELKEKG----------IPYEEM 376

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R +     +  + +       I         ++    +   + +      +ED L 
Sbjct: 377 AILYRNKYIINKLEKIMKE----KNIPFNLQKNSEISFGSPVDIYLKILEVWNDKEDILK 432

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
              ++K    N+S   +  +  +  + + +   I+            ++    +L+    
Sbjct: 433 LEELVKVLPRNYSYSVLNIMKRKNIDNKVLNRIIRISDKISDYPLSEILNKCEKLM---- 488

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                +                + F NE ++ L    +           SL+  I EL  
Sbjct: 489 ----FEIIKE-----------KTIFTNEEVEKLKTIKSSVKE-----KKSLEIYIRELRG 528

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               +        N+V +++VH +KGLE   VF+      VF                  
Sbjct: 529 I---LAVEGKITKNKVSVLSVHASKGLEWEAVFIPTLLEGVFPSN--------------- 570

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                 +++   EE  RL YV  +R    L +    
Sbjct: 571 ----------------------IEEKNLEEEKRLFYVACSRGKSYLYLLHPE 600


>gi|224372826|ref|YP_002607198.1| ATP-dependent helicase [Nautilia profundicola AmH]
 gi|223588787|gb|ACM92523.1| ATP-dependent helicase [Nautilia profundicola AmH]
          Length = 675

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 119/742 (16%), Positives = 226/742 (30%), Gaps = 195/742 (26%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS-FFL 74
           + + + P     ++  NK      E     +L  A+ ++  +           L+    L
Sbjct: 43  LEEGIKPEEILLLTFTNKAAQEMKER-VAGVLPSARNIEAGTFHAVSYRWLKKLNKNIVL 101

Query: 75  TQKFTPQ--------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST--- 123
            Q    +        K    +   ++ P     L      F+          + +     
Sbjct: 102 KQPKDLKILFRSIYDKRDFLRLRGEEKPYSANYLFDLYSLFLNSNVSDFGEWLTERAPLQ 161

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
              + + + +   YEE K+ + ++DF  L+I   + LK                  +L+D
Sbjct: 162 EEYILVYESIFDEYEEIKRAHGLVDFNSLLIRMIEELKNGIEVP---------FKEVLVD 212

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ +Q E+I ++ +             +LF VGD  QSIY+F+GA+   +    + 
Sbjct: 213 EYQDTNPLQNELIENIKQ------------TSLFCVGDYDQSIYAFNGADISIISTFDKR 260

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       ++  L  ++RS  +IL + +KV +        S + T           
Sbjct: 261 Y--------ADANVFTLKKNYRSYGEILEIANKVIANNPRIYPKSLEVTR---------- 302

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
             G    W +V+  +D+                          R +A  I N +      
Sbjct: 303 --GFSGEWPKVLYYNDTFE----------------------EYRDVANRILNSL------ 332

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      +I VL R       I  + R       I           D   IK  + 
Sbjct: 333 -------TPRDEIAVLFRNNSSADAIEAMLRE----KGIECRRKGGVSFFDSREIKITLD 381

Query: 424 LGRFILSQEDDLSFVCMLKS-----------------------PLFNFSEDDIFKICTQR 460
           L  F+++ +D ++F+ + +                        P   F   D+ K    +
Sbjct: 382 LLTFMVNPKDIMAFIHIFEHAKGVGSAIANEIFEALMTLGDGDPKKGFLNPDLSKKVFNK 441

Query: 461 HETETVYEY-----------------------------IQKFANCGISKFQHVIKYIHEL 491
            +T                                     K +  G     +  K I  +
Sbjct: 442 KKTSYQLGLFDDFTQLGSVSKFKSVGMDEVFLANPILKHPKLSVEGGEFLYNFYKLIKRV 501

Query: 492 IHIAQFCSPH-DFFT----LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ----- 541
             +    S + +         + +   +++   + G  V +   E L       +     
Sbjct: 502 NKLKNPMSVYNEIIESKTFKHIISNIAKERAKDKNGKIVEERYHEALEKIENKVKVLGNL 561

Query: 542 -NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             +YS L++ ++ +      +     +    V ++TVH +KGLE   V+LVD   + F +
Sbjct: 562 LKNYSDLEKFLNAMVLGANEM-----SEGRGVNLLTVHASKGLEFKEVYLVDLMEKRFPN 616

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                             +         EE  RL YV +TRA D
Sbjct: 617 ----------------------------------IKLSKPAGGIEEERRLFYVAVTRAKD 642

Query: 661 QLIICKHSNTSNEKKSNQRTWY 682
           +L +C   N      S + + +
Sbjct: 643 RLFLCLAKNDRIRNMSYEPSRF 664


>gi|268680032|ref|YP_003304463.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618063|gb|ACZ12428.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946]
          Length = 676

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 89/580 (15%), Positives = 172/580 (29%), Gaps = 101/580 (17%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              + + +   ++  K++   +DF DL+I   + LKK                 +LIDE 
Sbjct: 167 FFDIYEDIFEEFQALKREFGYVDFNDLLIFMREALKKEHELF---------FEEVLIDEY 217

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q  +I +               ++LF VGD  QSIY+F+GA    +    +  +
Sbjct: 218 QDTNTLQGSLIDAF------------RSKSLFCVGDYDQSIYAFNGANIDIIGSFAKRYE 265

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                     ++  L  ++RS+  IL++ ++V            + T      +     +
Sbjct: 266 --------GANVFTLNKNYRSSHKILSLANRVIEKNPRLYEKRLEVTRDGAFEA--PQLL 315

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              +L+ Q  S      N +              S+  I A      ++        F +
Sbjct: 316 IYDELFAQYHSISSLIKNSRNAHADIAVIFRNNSSADGIEATLREQGVACKRKGGISFFD 375

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             +       + V+V  +     I            +S    D         I +     
Sbjct: 376 SAEVKAMLDLVGVVVNPKDMMAFIHTFEYARGVGSSLSKELFDGLFKLGEGNIYNGFFHP 435

Query: 426 RF--------------ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
           +               +   +D      + +     F E  +      +H   ++     
Sbjct: 436 KAGVEEIFKKRPKNHQLGLFDDVYDLGSVSRFYDLGFEEQFLSN-PILKHPRLSIDGAKF 494

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL---------GAKKGRQQFISRFG 522
                   K    IK    LI+              L         G+   +Q+  +R  
Sbjct: 495 LHQFYKFMKHATRIKTPQSLINHVLSSEVFSAMAETLSVKRSIKKDGSVDEKQKAEARSR 554

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
                 L    +       +     +  ++ L      +     +    V ++++H +KG
Sbjct: 555 IFRKGHL--LKDLASSYASS-----ERFLNALTLGSNEM-----SEGEGVNLLSIHASKG 602

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   V+++D     F ++                                      K  
Sbjct: 603 LEFKEVYVIDLMDGRFPNR----------------------------------KLMQKGG 628

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
           + EE  RL YV  TRA D L +        +K S   + +
Sbjct: 629 SLEEERRLFYVATTRAKDMLYLSYAKYDKIKKISYTHSPF 668


>gi|145225244|ref|YP_001135922.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
 gi|145217730|gb|ABP47134.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
          Length = 1038

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 99/973 (10%), Positives = 259/973 (26%), Gaps = 168/973 (17%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK--IR 111
           +  +  +       LL+        +P +          +     +L+       +  I 
Sbjct: 112 RLITSAEQDGIIRELLAGDVEDGPASPVRWPEQLRPALSTVGFATELRDLMARCSERGID 171

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE------------DLIINTNDL 159
                     +       A      YE+       +               +L+    + 
Sbjct: 172 PVALQRIGRHAGRPEWQAAGRFAQAYEQIMLLRSAVGMAAPQATVPALGAAELVGAALEA 231

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
                + A +       +  +L+D+ Q        ++  L                    
Sbjct: 232 FA---MDADLLSAERSRVQLLLVDDAQHLDPQAARLVEVLAA----------GAELTVIA 278

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+++ + GA+P  +                    + L  S R              
Sbjct: 279 GDPHQTVFGYRGADPALLR--------------GDGPALILNRSHRCA------------ 312

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                                        +      +  +     +Q +      + P  
Sbjct: 313 ------------------APLADAIAAITRRLPGADASREFTGRAEQGTLAVRIAASPHA 354

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            SA          I++ +    +        +    + V+VR     P            
Sbjct: 355 ESAL---------IADALRRAHLVD-----GVPWDRMAVIVRS---VPRTGASLGRALAA 397

Query: 400 YKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
             + V        L +  A++ L+ +      + D    + ++  P+       + ++  
Sbjct: 398 AGVPVEDPHPDVPLANQPAVQALLTVLEATAEKLDGERALALVTGPIGRVDPVSLRQLRR 457

Query: 459 ---------QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFF 504
                     R   E + E +++       +    ++ +  ++  A+        P    
Sbjct: 458 TLRRGVTAPDRGFGELLVEALERDVAALPDEHARALRRLRAVLTSARRSAEQGGDPRQTL 517

Query: 505 TLILGAKKGRQQFISRF------GNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISEL 554
                    ++++++          +    LD      +   +  E+ + +SL+ LI  +
Sbjct: 518 WQAWNRSGLQKRWLAAAERGGPAAAQAERDLDAVTALFDVAEQYVERTAGASLRGLIDHI 577

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   R  + + + V +++ H A   E   V L      ++ +   +   +      
Sbjct: 578 TGLSLPPARGDARSGDAVALISAHAALSGEWDFVVLAGLQEGLWPNVSPRGGVLATQHLV 637

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           D                        +     E  RLL   M RA  ++++    + S ++
Sbjct: 638 D----------VIDGVAAPGQRLSSRAPLLAEERRLLIAAMGRARSRVLVTAVDSDSGDE 687

Query: 675 KS-NQRTWYDMVYDSFHNDERVK-KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
            +      +++   +          I+    ++    +    S     +  +  +E +  
Sbjct: 688 AALPSPFCHELAAMATEPVPEPALPIRAPRVLSPAAVVGRLRSVVCAGSDEVSEDERVCA 747

Query: 733 LMDEQKI---------PKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLS 775
                ++         P   +   +   +EP          L+PST+       L  LL 
Sbjct: 748 AAQLARLATAGVHGADPSSWYGARELSSDEPLWDGDDHVVTLSPSTLQMLADCPLRWLLE 807

Query: 776 DNQTFN-------RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
            +            G ++H L+    T            +           + + +    
Sbjct: 808 RHGGARGRDVRSTLGSLVHALVSESGTAESVLLDELDKVWGKLPFDAQWHSDNERIRH-- 865

Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKI-------NCPKKDIIISGRIDQISIS-QQNIFI 880
             +L   +   + +    +EV     +             + + GR+D++    +  + +
Sbjct: 866 LEMLATFLKWRSDTRGELTEVGTEIDVDGVVAGGEGDGPGVRVRGRLDRLERDSEGRLVV 925

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD---SYPNKSLVCLLIY---VSEPKVFI 934
            + KT      + +       AQL++Y+  +     +  ++     L+Y    +  +   
Sbjct: 926 VDVKTGKSPVSKDDAQA---HAQLAMYQLAVAAGLIADGDEPGGGRLVYLGKTTGGRATE 982

Query: 935 IPQNKLNKAFAEI 947
             Q+ +     E+
Sbjct: 983 RHQDAVTPEVREL 995


>gi|225023329|ref|ZP_03712521.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC
           23834]
 gi|224943974|gb|EEG25183.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC
           23834]
          Length = 1241

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 112/787 (14%), Positives = 247/787 (31%), Gaps = 78/787 (9%)

Query: 17  YKDLWPLPYFQVSDINK-YVSLSMETGNPTILKKAQ----TLQQASQTQCIEERFSLLSS 71
               W      V +I   Y  +  +    T           L+QA+Q    +   S    
Sbjct: 215 LHAAWQKLQRNVEEIEAVYRRIKPQLHGGTFNASIDTLFTELRQAAQEGLEQPVLSKPDR 274

Query: 72  FFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
               ++   +  I   Q I +      + L        +I D      +         L 
Sbjct: 275 LLCFEENALRNRIRKNQHIEEADIAALQPLAVFGRRLAEIDDAEQEAAIRLKLECLGYLK 334

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ---EINHILIDEVQD 187
             L       K+++   D++DL+++ +  L   +              +    LIDE QD
Sbjct: 335 TRLAED----KRRSSRRDYDDLLLDVHAALSNPEHPEQAEALAQALAAKWRVALIDEFQD 390

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T  +Q+ +                    +F VGD KQ+IY F GA+    L         
Sbjct: 391 TDPLQYAIFH---------TAFIRQGVPVFLVGDPKQAIYGFRGADIHAYLA-------- 433

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
           A           L  ++RS  D++  +  +F+       L + +   ++   +       
Sbjct: 434 AAADTAPEQSYTLHTNYRSHRDLVNGIGHLFAARSRPFVLPQIAYPAVQAARAESLLSPA 493

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI----- 362
            +    V   + S  + +            ++    + A   A  I+  +          
Sbjct: 494 PEAAVAVRWINPSAEDGKL---------PNKDFLRELSANYCAREIAARLNQAFSGSLMI 544

Query: 363 --FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
               + K + +    I VLVRK ++  ++    +       +  V   +  + D    + 
Sbjct: 545 EGKDSKKNKPLHPGQIAVLVRKHEEGEMVARALK----RRGVRSVLLQQQSVFDTPEAEA 600

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           L AL  F L+ +       +L    + ++  D+ ++    +                   
Sbjct: 601 LHALLLFWLAPQQTEYLRFVLGGIFYGYTAQDLAELNGNENR--------LAEWITLAET 652

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----------VLD 530
                +       + +F         +L  +  R     R   E++            L 
Sbjct: 653 AAEAWQQHGIYTALTRFARQSGLEQHLLHTRNERSFTNFRQLAEILALAAAECASPVALA 712

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           ++L   L++ + +  S +      ++     +    ++ + V+I+T+H AKGLE P+VF 
Sbjct: 713 QWLEMRLKSSKKNKKSKENKNDREDKGNKEYQLRLESDEDLVKIVTMHAAKGLEYPLVFC 772

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                   +   + +   + S ++   + +   Q    +       + L      E  RL
Sbjct: 773 PFVWD---TSDKLVQDWNIISQSNGRNLLLAKAQLDEEDE------RQLFAEDLGERLRL 823

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           LYV +TRA +QL++     ++  + +      ++  D         +     ++ +    
Sbjct: 824 LYVALTRAREQLVLYAAPCSNTPENTFAYLLAEIGEDDCQAIRDDWRGLKGQALTEALRQ 883

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
           A+           L+  E      + +   ++     +  +     L      +    + 
Sbjct: 884 AWLKRIQSAAPGQLQWLEGEPPEANYRARNEQ-QGSYRALVLPERPLQFIRHTSFTGLSR 942

Query: 771 ESLLSDN 777
           ++L ++ 
Sbjct: 943 QTLTAEE 949


>gi|186684554|ref|YP_001867750.1| UvrD/REP helicase [Nostoc punctiforme PCC 73102]
 gi|186467006|gb|ACC82807.1| UvrD/REP helicase [Nostoc punctiforme PCC 73102]
          Length = 805

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/639 (14%), Positives = 197/639 (30%), Gaps = 60/639 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-KMF 120
                 LL       + T +    +    +  P+L   +           ++   + K  
Sbjct: 177 PGIYLRLLEGHQFDGEETERLRRQSVLRTEVLPELANTVIHEAKSSGISPEKLREWSKQT 236

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                 L++A  L   Y+   +    +D++D+I+    +L+        R     ++  +
Sbjct: 237 TDEYTILSVAAGLYEQYQNLMRSRDFIDYDDMILAALRVLENDSA----RRIEQNQVFAV 292

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNT----HSSPRTLFAVGDEKQSIYS-FHGAEPK 235
             DE QD+S +Q +++  L  D + G  +      S   L  VGD  Q+I S F  A+P 
Sbjct: 293 FEDEAQDSSPLQTQLLEILASDGYKGDKSSILTPHSSLNLVRVGDPNQAINSTFTPADP- 351

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD---KVFSIPENAQGLSEDST 292
                    +       +   +  +  + RST  I+   +   K  +    A+  +   T
Sbjct: 352 ------IYFRHFCEECDRIERLATMDQAGRSTRIIIEAANFALKWINNQSLAKTNNGQQT 405

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              R    R+  +  V+  +   + + +      E +T                  ++  
Sbjct: 406 PENRQVPFRLQTIRPVETGDPQKNANPAPIGQGLELYTPRDIH--------HTVELLSQR 457

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +  + G D   ++            +LVR+ +    +      +  ++ I++        
Sbjct: 458 VIELFGEDPTQNSA----------AILVRENRQGRWLAEALAPVCKEHNITLYDVGERDR 507

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--FSEDDIFKICTQRHETETVYEYI 470
             H+  ++++AL +F             L++ +        D+  + +   E    + Y 
Sbjct: 508 RSHVP-QEILALLQFCDRPHSPDYLKAALEALVQRQLIPTQDLNALASLPEE----FLYP 562

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
              A       Q   +    L+        +   + +       Q  ++       D L 
Sbjct: 563 GPLAAPQAETVQKAARLCRNLLRARLELPLYQLISFLALTLNYDQAELAT-----ADKLA 617

Query: 531 EFLNFTLRNEQNSYSSLQEL-----ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           E +N  +    +    L  L         E               ++ I+T+H AKGL+ 
Sbjct: 618 ERVNQQIAGNSSMRGMLSALSEIVSSERFEPVETEDSEERYTRRGQLTIITMHKAKGLDW 677

Query: 586 PVVFLVDTGSQVFSHKHIKK-----MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
             VFL      +   +         +                   +S    V+   +  K
Sbjct: 678 DYVFLPFLHENLIPGRFWVPPQSQFLGDFTLSEVARAQIRAALHGESTIPDVTQAWEQAK 737

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                E  RLLYV MTRA   + +             + 
Sbjct: 738 HLKISEEYRLLYVAMTRAKRLVWMSAAQKAPFTWSKPEN 776


>gi|257453822|ref|ZP_05619100.1| UvrD/REP helicase [Enhydrobacter aerosaccus SK60]
 gi|257448749|gb|EEV23714.1| UvrD/REP helicase [Enhydrobacter aerosaccus SK60]
          Length = 1504

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 124/898 (13%), Positives = 267/898 (29%), Gaps = 149/898 (16%)

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            +    +   ++  K    K        K   D+ + + +   +   ++D F     +   
Sbjct: 410  KVLEGIEDLYVNDKGFNSKKEQQSATFKSF-DIVDNIWQLIQQTQALQDYFKQVNFYFIQ 468

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 +++Y+  H  +  +   +  F   +   ND L  +   +  RY I  +    LID
Sbjct: 469  F----ISRYVRTHLPKRLESQRLTTFALQLARLNDALSGKKGQSLARY-IRHQYPIALID 523

Query: 184  EVQDTSLIQWEVIRSLTEDFFVGKNT--------HSSPRTLFAVGDEKQSIYSFHGAEPK 235
            E QD +  Q  +I+ +    F  +          H+  + L  VGD KQ+IY F G + +
Sbjct: 524  ESQDINTEQALLIQRVYLQDFEPETAEKSNTKKYHTPSQFLLLVGDPKQAIYGFRGGDVQ 583

Query: 236  RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF----------------- 278
                 K++  ++            L  + RS+A ++  ++  +                 
Sbjct: 584  NYTTLKKLFPEKPK---------SLNQNHRSSAALIDSLNHWYGVGEQDIDPNQADQLPN 634

Query: 279  --------------------SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
                                         +          +     +     + Q V   
Sbjct: 635  VNQQPYFMGREIYYRKISATRQNAELVFANVVDNEAASLPAFNHIAIEYKAPYSQQVVAV 694

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                    ++ +S       +      A  IA  I ++       S  + R +   DI V
Sbjct: 695  AENDGTSNDTDSSNDIISSSDERTVDYADAIAAQIFDLFDDGKPLSY-QTRGLTLSDICV 753

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            L  K  +   I        + + I+ V      +       DLM L   +L+   +    
Sbjct: 754  LAVKNSELHTIEKRL----HHHGIATVRGGSQSVFGDSMSVDLMTLQSVLLTPFSESKLK 809

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-----FQHVIKYIHELIH 493
             ++ S  F  + + I ++    ++T       Q   +             + + +     
Sbjct: 810  SLMLSSFFQLTLEQINQLYDALNQTNAQAAQGQAQPHQAHQASTNTSLAEIQQLVLTASE 869

Query: 494  IAQFCSPHDFFTLILGA---------KKGRQQFISRFGNEVID-VLDEFLNFTLRNEQN- 542
            + Q  S       +L               Q+       E +   L + L+         
Sbjct: 870  LWQKHSFLVAIQWLLNQPLTLPSQTTLNFWQRLAKHPNGERLLIDLRQLLDIISDQFNGQ 929

Query: 543  --SYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
               +   +   ++++Q P           +   V++MTVH +KGLE P+VF+V    +  
Sbjct: 930  VGEHQLFEWFCAQVQQQPKEDWSTQQRLPSDEGVQLMTVHASKGLEFPIVFVVGFTGESK 989

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK--------------------- 637
            +      +++          P +  +    NN      +                     
Sbjct: 990  AKFRGAPLYLYGIQTTHQATPQFTQKLTQNNNNPLLSRRLTALPTQIADNNSIDSINYVA 1049

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
               +S  EE  RLLYV +TRA +Q+ +   +  S  + S    + D +      +   + 
Sbjct: 1050 IEDQSAYEERLRLLYVALTRAKEQVYLVTVAKKSAVRNSALAPFMDDLAKFAVKETLTET 1109

Query: 698  IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--------------- 742
              + +S +  ++   +       N   E+  T+ + + +    +                
Sbjct: 1110 THIIDSNSLSKYYDSKLKFTPKTNRQNEQNATVAKTVAKIDYDEIIKVITIDTFKGWANT 1169

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-------------------------DN 777
             F+ +   I    +      + +   ++ S                              
Sbjct: 1170 SFTALSRYIEHTSVDTVVNAEDRQDDDILSAAQIRLLPISNSRLARESGNEVNSIRFNFE 1229

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
            +  N G  +H +L+ I        +  +     +  KL   K +  ++    R  + P
Sbjct: 1230 KGTNPGTFLHSVLEDIANNYNETPELAVPQQDARADKL---KRWSVMVDRTLRRYQMP 1284



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 13/76 (17%)

Query: 862  IIISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPYT-----HIAQLSIYEKILK 912
              + G ID +       FI +YK+++            +        +  Q SIY+  L 
Sbjct: 1386 QYLKGEIDLVYQHGTQFFIVDYKSNYLGNDFDSYNQAALYDAMTTHSYWLQASIYQVALH 1445

Query: 913  D----SYPNKSLVCLL 924
                   PN  +   L
Sbjct: 1446 RYLKLRLPNYDISTHL 1461


>gi|123966427|ref|YP_001011508.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9515]
 gi|123200793|gb|ABM72401.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str.
            MIT 9515]
          Length = 1212

 Score =  172 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 135/921 (14%), Positives = 267/921 (28%), Gaps = 146/921 (15%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
            + ++Q +     E+   LL     +++    K    + INK+       L      F  +
Sbjct: 280  EWIEQINLRLDSEDISQLLYDI--SKEDLLFKYFYNKNINKEINKFNLSLD--FSRFKLL 335

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT-NDLLKKRDVSAWI 169
            +D+    K    T       +    +    KK   + +F DLI       L     +   
Sbjct: 336  QDKIYKIKEGIYTEFVRIFVQLAYLNLITTKKSLSIFNFNDLIKTVEYKYLSSDICNDRS 395

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
               I  +   +L+DE QDT  +QW +I             ++    L  VGD KQ+IY F
Sbjct: 396  FSDIQNKFKCVLVDEFQDTDNVQWNIINKFF---------NNKNHFLLCVGDPKQAIYKF 446

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             G + +  L  K               +  L  ++RS+ D+L  ++ ++        L+ 
Sbjct: 447  RGGDIETYLDAK----------SSAKEVFSLINNYRSSNDLLDFINNLYKNGLKESNLNY 496

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                +                               +  + S F+ +   +    + + +
Sbjct: 497  KKLNSRIKNCINY-----------------------KFDFESPFEIVQFSNKEIDIEQFV 533

Query: 350  AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
               I + +           + I    I +L              +     + I     ++
Sbjct: 534  TEYIVDFL--------LNNQEIDINKISILTLYNSQC----LELKNKLLKFNIPCQIKNK 581

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
              + D  A   L+     +LS     +   +  S       +++      +       + 
Sbjct: 582  QNIFDTEASSLLLLFIETLLSPRLFRNISLLATSKFIEIDVEELIDHQISKKIKNLTDQC 641

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            I          F  V+  +      +   +  D +  +    +  +        E+I+  
Sbjct: 642  ILWSLELREKGFLTVVNELIINYKSSSIKNEVDLYANLFQLSEIIE-------IELINNN 694

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                      +     SL+                     N + + T+H +KGLE  VV 
Sbjct: 695  FNLNKVFKWYQNQLDDSLRICT------GEDYMAKDYNLQNGINLSTIHNSKGLEYDVVV 748

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                   + S+K  K    +   N D  I I I  + S+   V  L    ++   +E  R
Sbjct: 749  CPYLS--IISNKSKKTKGPIWKSNLDRSIYINISNNYSK---VEGLKLIEERDLFKESER 803

Query: 650  LLYVGMTRASDQLIICKHSNTSN---EKKSNQRTWYDMVYDSFHND-------ERVKKIK 699
            L+YV +TR+  +LII      ++               + +S   D       + +    
Sbjct: 804  LIYVALTRSKYKLIIFNDIENTDNILNNDLLPNLKNIHIINSKREDKVVKMNIKEISSKF 863

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN------- 752
              +S+N + W   + +T     +  E   +        +  KK  S      +       
Sbjct: 864  NLSSLNNNLWKINKVNTKEIRKSSPEDVISFSSYSSWIRKDKKTESSSSLYKDYEDNISI 923

Query: 753  ----EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                E   L  S  + K       L    +    G  +HK+L+      +   K      
Sbjct: 924  LKTIEETQLVKSDNNPKYLNLPNPLSDFPKGTVAGTCLHKILERFDFQNDTPEKLLELII 983

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLE--------NPMMTTAMSCDSYSEV----------- 849
               N     +     +   I R++         N  +    S +   EV           
Sbjct: 984  EELNFFQIDSSFALKVREGIFRIINVSFGKKLLNKRLIDISSNNILKEVKYDLPLSYNGK 1043

Query: 850  -----------------SVSGKINCPKKDIII------SGRIDQIS-----ISQQNIFIF 881
                                 +      D+ I      SG ID +      +     ++ 
Sbjct: 1044 SINSNDIAKSFLLDQEFEFGKEYATKINDLQILNKGFHSGCIDCVIPLGNTLEDSKWWVI 1103

Query: 882  EYKTHHHVPQEIEHI-PYTHI 901
            ++K++    +E     P  + 
Sbjct: 1104 DWKSNFISSKENSDCFPKNYH 1124


>gi|291333834|gb|ADD93517.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C13]
          Length = 534

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/560 (14%), Positives = 171/560 (30%), Gaps = 63/560 (11%)

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV--------- 466
           + + D+++L R +LS  D ++++ +L++P      DD+  I +    +            
Sbjct: 1   MPVMDMLSLTRALLSPADRIAWLSVLRAPFCGLGLDDLVIISSTLEVSGKTPLALLHQLQ 60

Query: 467 ---YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
              Y      +     + +H+I  IH    +       +    +     G          
Sbjct: 61  AVDYTENNNLSPYARHRLKHIIPCIHYAWQMRGKGCLRNVIEHLWIQLGGPSTLRDSAE- 119

Query: 524 EVIDVLDEFLNFTLRNE-QNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAK 581
             +D +  FL+     +   +    +      +  +    +    A    ++IMT+H AK
Sbjct: 120 --LDDVRCFLDLLEHWQVAGTLPDWESFQQAADKLFATPNRGDMDATTPSIQIMTIHKAK 177

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---QSKSRNNIVSDLIKH 638
           GLE   V L        S                    I  P     +  ++I   L   
Sbjct: 178 GLEFDHVLLPGLSRSPKSPDKPLLRWQQTITQQGESSLIMAPLGAHDEEDDSIYGYLKHE 237

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
               TQ E  R+LYV  TRA  +L +                          + +   K 
Sbjct: 238 AAIKTQLENTRVLYVAATRAVSKLYLFAQVTEKGS-----------------DWQAPAKT 280

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
            L +S+ +      +   +      +E      +        ++L             L 
Sbjct: 281 SLLSSLWQTIVTGLD--DNSLSVIQVEANSAPSERRSGLHHKRRLPITFCPPQAPTLTLL 338

Query: 759 PSTIDTKGKTNLESLLSDNQT--FNRGLIIHKLLQVIFTLPEHKRKNF--------ITSY 808
                 + +      LSD+     + G I+H+ ++ I T                   + 
Sbjct: 339 TGVEGNRKREQHSHQLSDDNARLAHLGTIMHRTIKQIATEGPSSWPEQRLNKMPVSWRAQ 398

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD--SYSEVSV---SGKINCPKKDII 863
             +   L   +E  ++  ++  +L +      +     ++SE ++   +    C    + 
Sbjct: 399 LKELGVLVSEQELASMRQALINMLNDDDGLWILQPHTQAHSEQALGYSAAVAGCRDGGVS 458

Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY-----THIAQLSIYEKILKDSYPNK 918
           +   ID+  ++    +I +YK       +   +       T+ AQL  Y  + +      
Sbjct: 459 V---IDRTFVTDGVRWIIDYKFSAPNADQSVAVFSTRQTTTYQAQLQHYANLYRQIDTT- 514

Query: 919 SLVCLLIYVSEPKVFIIPQN 938
            +   L +   P    +  +
Sbjct: 515 PVRGALYFPQIPLFVEVSLD 534


>gi|254525779|ref|ZP_05137831.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT
            9202]
 gi|221537203|gb|EEE39656.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT
            9202]
          Length = 1208

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 111/830 (13%), Positives = 249/830 (30%), Gaps = 141/830 (16%)

Query: 139  EAKKKNCVLDFEDLIINTND--LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            E KK   + +F DLI  T +   L     ++    KI +    +L+DE QDT +IQW +I
Sbjct: 364  ELKKSFSIFNFNDLI-KTVENTFLDSEISNSNTLSKIQKRFKCVLVDEFQDTDIIQWNLI 422

Query: 197  RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            +            ++    L  VGD KQ+IY F G + +  L  +               
Sbjct: 423  KKFF---------NTKNHFLLCVGDPKQAIYKFRGGDIETYLDAR----------SNAIE 463

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            +  L  ++RS+  ++ V++K++        L                    ++L  ++  
Sbjct: 464  VFSLTDNYRSSKKLIDVLNKLYKNGLKQSKLKY------------------IKLTSRINE 505

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              + +   +       F     +             I +++    +      + I    I
Sbjct: 506  NINPEFKFKDVFEIVEFSKKETD-------------IEDLVTHYIVNFIVNNKKIDINKI 552

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             +L                  N + +     ++  + D  A   L      +L+     +
Sbjct: 553  AILTINNSQCLNFKKKL----NQFNLPCKIQNKQNIFDTEASSLLFLFIECLLNPRSLKN 608

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
               +  S       +++       +    + + I          F +++  +      + 
Sbjct: 609  ITLLATSKFIEIKLENLLGNGISNNLEVLINKCITWSQEIREKGFLNIVNELLINYKSSS 668

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                 D  + +    +  +  +     +        LN      +N    +  +      
Sbjct: 669  IIQDSDLNSNLFQLSEIVEIQLINNDFD--------LNIVFNWYKNQLDHILRI-----S 715

Query: 557  YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                         N + + T+H++KGLE  +V        + S K  K    +   N D 
Sbjct: 716  TGEDFLTKDYNLQNGINLSTIHSSKGLEFEIVLCPYLS--IISKKSNKIKGPLWKSNIDR 773

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
             I + I  + S+   V       ++   +E  RL+YV +TR+  +LI+      +N   +
Sbjct: 774  NIYVNISNNYSK---VEKFKLIEEEDLFKESERLIYVALTRSKYKLIVFNDLEDTNNILN 830

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD- 735
            N         D + +   V+  K        ++    ++ +  +   + ++ +     D 
Sbjct: 831  NDLLNNLENIDIYKSTFEVRIEKEKIKEIFSKFQNNRFNNNLWKIDNVNKKISRVFNSDQ 890

Query: 736  ------------EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----LESLLSDNQ 778
                        E K    + +  K+  +   I+  S                 L    +
Sbjct: 891  FISYSSYSSWIREDKNIDGVINQYKDYEDNISIIKDSNFKNSKNYPNYFSCPNPLSEFPK 950

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
                G  +HK+++      ++ ++         N           +  +I R++   + T
Sbjct: 951  GTIAGTCLHKIIERFEFRNDNNQELIDLIIEELNFHQIDTSLAFKVKDAILRIINISLGT 1010

Query: 839  TA----------------------MSCDSYS--------------EVSVSGKINCPKKDI 862
                                    +S    +              E     +      D+
Sbjct: 1011 ELQNKKLVDIPNEYLIKELKYDLTLSYGDRNINSNDISNCFFLDQEYEFGEEYANKINDL 1070

Query: 863  II------SGRIDQIS-----ISQQNIFIFEYKTHHHVPQEIEH-IPYTH 900
             I      SG ID +      +     ++ ++K++     +    +P  +
Sbjct: 1071 QIMNKGFHSGCIDCVFPVGNKLEDSKWWVIDWKSNSISGSDNSDCLPRNY 1120


>gi|261350758|ref|ZP_05976175.1| DNA helicase II [Methanobrevibacter smithii DSM 2374]
 gi|288860513|gb|EFC92811.1| DNA helicase II [Methanobrevibacter smithii DSM 2374]
          Length = 994

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 128/865 (14%), Positives = 231/865 (26%), Gaps = 202/865 (23%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y E       +D+  + I   + LK+   +         +  +IL+DE QDT  +Q 
Sbjct: 205 YVKYLELLDLFNAVDYNTVQIKFLESLKENPET---------QYTNILVDEFQDTDPVQA 255

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+   L ++               AVGD  QSIYSF G+        +   ++       
Sbjct: 256 EIFEILLKNAES----------FTAVGDVDQSIYSFRGS-------FRDYFEEFYNKYN- 297

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +I L  ++RST +I+   +                      ++S             
Sbjct: 298 -AELISLNYNYRSTNNIIRTSEAFIKPQRKEYSKKYLVGARNEDKASY------------ 344

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 + +       A++I   I ++     I         Q 
Sbjct: 345 ----------------------ILESLDPQEEAQKIFNLIKDLKDNGKIR--------QY 374

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            D+ +L R       I FL    K    IS   +    L +   +K ++ L  +I  + D
Sbjct: 375 SDVAILYRSIVSNKNIPFLIDEFK-KNDISYHISGTENLIESDEVKSILTLFYYIARKLD 433

Query: 434 DLSFVCMLK------SPLFNFSE-------------------------------DDIFKI 456
               +  L+                                             +  F++
Sbjct: 434 HSYGMSNLEKEWLNLRAFCGIDFIPKFRKLSVETKRYLMELQENFENDVLKTEKEVYFEL 493

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHV------IKYIHELIHIAQFCSPHDFFTLI--- 507
             ++   +       +  +  I  F+ V      +  I +      F         +   
Sbjct: 494 TGKKSRKKKFNGVFTRNEDVLIEIFKRVNKPVVDLDLIEDAGDREFFTELEKLRENVFSS 553

Query: 508 ---------------LGAKKGRQQFISRFGNE--VIDVLDEFLNFTLRNEQ-NSYSSLQE 549
                          L         +   G+    ++ L +        E   S   ++ 
Sbjct: 554 DEEDKLTILEVYYELLNLCGYFDDLVINNGDYELELENLSKISRTIFNYESIISAKDVRG 613

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L   L           S++ + V++MTVH AKGLE PV  +       F      +  + 
Sbjct: 614 LFFFLTNV-IEGYGTSSSDVDGVQLMTVHKAKGLEFPVTIVSSLSEYNFPL--APRDPMR 670

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
              N +     + P         S+  +        E NR++YV MTRA D L++     
Sbjct: 671 EKDNINKDDTFYTPNKFLEYKDCSEADEVNL--GLAEENRVIYVAMTRAQDILVLSVVGK 728

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
              E       +   +     +   V      N +                         
Sbjct: 729 MPEEICRISNYFNKNLDLDNMSISSVGSKPEENKL------------------------- 763

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
               +           P + ++        S  +                   G IIH+ 
Sbjct: 764 ---NLSYSSFADYNNCPWRYNLLNKLHFKVSQKEVTKM---------------GSIIHEA 805

Query: 790 LQVIF---TLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
           L VI           K  I               +E+ + + SI                
Sbjct: 806 LDVINQEIKDAGEISKENIEKIAKDTYYLHGGTDEEFDDYMDSIFDYYNEIGF------- 858

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
             + V      +  + +   +G ID I  +      I +YK +        +    +  Q
Sbjct: 859 DITVVDSEVPFSIDRDNYRFNGAIDLIYKNQNGEYGILDYK-NTIFKD---YNREKYAQQ 914

Query: 904 LSIYEKILK--DSYPNKSLVCLLIY 926
           L  Y   LK    Y +  +    IY
Sbjct: 915 LLTYILALKNDSKYCDIEITEAKIY 939


>gi|296140735|ref|YP_003647978.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
 gi|296028869|gb|ADG79639.1| UvrD/REP helicase [Tsukamurella paurometabola DSM 20162]
          Length = 697

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 93/660 (14%), Positives = 186/660 (28%), Gaps = 165/660 (25%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
              + L+        + R+ LL + F       +   +  E      DL  ++  ++   
Sbjct: 91  AAMRQLRYFWPRAVGDTRWELLDNKFPIVGRAARDCELRPET-DTVRDLLAEIDWAKASL 149

Query: 108 IKIRDRFNTYKMFKSTLASL-TLAKYLNAHYEEAKKK---NCVLDFEDLIINTNDLLKKR 163
           +         +    T          + A YE  K     N +LDF+DLI+ T  +L+  
Sbjct: 150 VTPETYAQAVEQAGRTAPMAPGTVADVYAAYERRKTDQDGNRLLDFDDLILVTAAILEDN 209

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            V   +  +        ++DE QD + +Q +++ +   D             L  VGD  
Sbjct: 210 AV---VADEFRDRYRSFVVDEYQDVTPLQQQLLNAWLGD----------RDDLTVVGDAN 256

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IYSF GA P  +L   R  +           I+ L   +RST  ++++ +KV    + 
Sbjct: 257 QTIYSFTGATPNYLLDFTRRFE--------DAVIVRLQRDYRSTPQVVSLANKVIGAAQG 308

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                  + T +     R      +                             +     
Sbjct: 309 R-----VAGTRLELIGQRPDGPSPI---------------------------YAEADDEP 336

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ +A  I  ++ +           + A +I +L R    + +             I 
Sbjct: 337 AEAKLVAKRIRELMASG----------VPASEIAILYRINAQSAVHEAALTE----AGIP 382

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
                     +   I   +                          S D++  +       
Sbjct: 383 YQVRGGSAFFERPEIGQAVRELMSRA-------------GQFGGISGDELMSMVEGA--- 426

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
             +    +       ++     + ++ L+ +    +                    R G 
Sbjct: 427 --LEPLGRTTEPPDGARALERWQALNALVELTADLA------------------KQRPGL 466

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            + +++ E        E     +++ +                       + ++H AKGL
Sbjct: 467 TLAELIGELRARA---EAKHPPTMEGM----------------------TLSSLHAAKGL 501

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   VFLV                                        ++  I       
Sbjct: 502 EWDAVFLVGLTEGSVP--------------------------------IAQAIAKGDPEP 529

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            EE  RLLYVG+TRA + L +      +   +  ++    +   S   D    ++  +  
Sbjct: 530 IEEERRLLYVGVTRAREHLHLSWALARNEGGRKTRKRTRFLDVVSAQADAGRPRVADSGP 589


>gi|314918022|gb|EFS81853.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1]
          Length = 916

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 105/915 (11%), Positives = 244/915 (26%), Gaps = 95/915 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTL------QQASQTQCIEE 64
           S  L+     P      + + + +  + ++    T+   A+ +      +  +  +    
Sbjct: 48  SEVLVLAQTRPSAQALRTALVRRLGGAHLDPQVMTVHALARRIVASPSKRLLTAPEQEFR 107

Query: 65  RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              LL++  ++      +    T +       +  +L++   +   + +      + +  
Sbjct: 108 MRELLAARDMSDWPEELRTCAGTAQFASDVRVMASRLRQEGCDPQDLTEAGTASGVPE-- 165

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +     A Y +       LD+ + +      L +      +R      I  ++ D
Sbjct: 166 ---WRVLGPFLADYLDVLDLEGSLDYAEAVHRARIALTRPGADVEVR----SRIKLLICD 218

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           ++ +    Q  ++  +                     D  Q+IY F GA  +R+      
Sbjct: 219 DLTECDPSQVRLLAQIARC----------HVPCVLTADPDQTIYGFRGAVAERLDEVIDE 268

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       S+  L  ++R++  I  VV+ +          S        H +S   
Sbjct: 269 FP--------DVSVHHLTTNYRNSQHIAEVVESL-RTGMPVMPSSSRLRRRANHSTSTEA 319

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                     +      +                +  +           I+ ++  + I 
Sbjct: 320 GTVAALRAPSITRLV-RKIAGTLRHARVADGVAWRSMAVVTRHGGELDVIATILAAEGIP 378

Query: 364 SNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               +      DI  V          +   +    +   ++ +  +     D   I  L 
Sbjct: 379 VLRSRDEYALSDIYAVTHILNALEMAVALASGAQPSARDVATLLANPLAGIDRSVIHRLE 438

Query: 423 ALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA-NCGISK 480
              R +   + D +    +   P    +          R E  +  E             
Sbjct: 439 TWCRLVRGVDVDWALLKELGADPTITAAGKSERTDDASRSEDASTAELDTVCEVYSVPPG 498

Query: 481 FQHVIKYIHELIHIAQFC--------SPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
            + + + +  +    Q          + H+    +           SR     +     L
Sbjct: 499 LRALAQPLAVMTQRVQRAADLLRSGATCHEALWALWQGSSWAASLRSRAVAGDSTANRDL 558

Query: 530 DEFLNFTLRNEQNSYSSLQELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D   +     E     +       L      EQ P    R    + + V ++T H  KG 
Sbjct: 559 DGLCSLFDMAESAQTMAGIAGGQRLIEVVRQEQIPADRARESDEDRDGVNVVTAHRIKGR 618

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E  VV +       +   +     +        G+      S                  
Sbjct: 619 EFDVVTVCGLEEGNWPAGNHTGSLVRADRWSPDGLVAAPGWS----------------EN 662

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                RLL V  +RA  QL++C   +    ++ S        + D+  +       +L  
Sbjct: 663 LRAETRLLLVACSRARHQLLLCSVDSAEEGKRPSGLVAGLSHIEDNADSLSFTSLTELVG 722

Query: 703 SI-----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPY 755
            +     ++ E            +     E   ++L+ +           P + D+    
Sbjct: 723 ELRRVIADESESPGVRAEAQALLDDLRNEEHHGRRLVPQADPATWWRQGVPRQADMAGEI 782

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKL----LQVIFTLPEHKRKN 803
            L+ S I           ++     +         G ++H++    +             
Sbjct: 783 ELSASHIGELLTCPRRWFMTRRAGASSGSALRASIGSLVHRICAGNMDQWSLPEALAELE 842

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +A+   + E  +   ++ R   +  +         +EV V G I  P     
Sbjct: 843 AAWPEIELSAEWQRSAELADAKAAVQRF--DGWLQLRNRQLIGTEVRVDGTITVPSGTAR 900

Query: 864 ISGRIDQISISQQNI 878
           + G ID++    +  
Sbjct: 901 VRGSIDRLERDAEGA 915


>gi|256831951|ref|YP_003160678.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
 gi|256685482|gb|ACV08375.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
          Length = 1059

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 121/935 (12%), Positives = 254/935 (27%), Gaps = 131/935 (14%)

Query: 38  SMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK 97
            + TG       AQ L   +Q       +             P     T  +     +L+
Sbjct: 110 RLITGPEQDHLLAQILAGHAQGLVPAPAWP------------PSVPPQTLSLRGFRDELR 157

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL-------DFE 150
           +   +  +  +   + F   +  +        A  + A Y+   + + +        D  
Sbjct: 158 DLFMRVAEHGLTSGELFELGQRHER--PDWCAAAQVLAEYDTVVELSSMQPDVGRRDDPA 215

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
            ++ +  D+L   D             + +++D+ Q+ +     +++ L          H
Sbjct: 216 RIVSSAADILSHWDTGG------RPTYDLVIVDDAQEMTAATVALLQVL----------H 259

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +   GD   ++  F GA P+ + +      + A   G     + L   +RS   +
Sbjct: 260 RDGARIVMAGDPDMTVQGFRGASPRHLNQA--TFPRTAPG-GFAAERLTLSTVWRSHPAV 316

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
              V +V S   +A  ++    T+     ++  Q          VS+             
Sbjct: 317 RERVREVTSAIASAGIVAHRRATSRHVNRAQDPQASPPDEKPTTVSRTQPGV-------- 368

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                       + LA  I    S ++   T+        I    + V+ R         
Sbjct: 369 -----------EAHLAPSIHVETSAIVN--TLRHWHIDEAIAWSSMAVIARSTAHLQR-- 413

Query: 391 FLTRFLKNDYKISV-VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV-CMLKSPLFNF 448
              R      ++ V V      L D  A++ L+ +         DL  V  +L+      
Sbjct: 414 --IRRALERAQVPVTVLGTDVALRDEPAVRGLLDVLALARDDTIDLDLVLRVLQGVYGGL 471

Query: 449 SEDDIFKICTQRHETE--------------TVYEYIQKFANCGISKFQHVIKYIHELIHI 494
               I ++       E               +   I+   +  I         I  L  +
Sbjct: 472 DSLGIRQLRRHLRSAELRQDGARTSDELLIDLMATIRDHGHHDIPPHHVAAAAIGRLTAM 531

Query: 495 A---------QFCSPHDFFTLILGAKKG---RQQFISRFGN---EVIDVLDEFLNFTLRN 539
                                +  A +     +              D LD  +      
Sbjct: 532 IQAACTVMQGHTHDAQTALWAVWDAAQVAPTWRHIALSDSPASGRAHDDLDAVMALFRSA 591

Query: 540 E----QNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           E    +    S++  I+ +E            + + + V ++T   A G +   V +   
Sbjct: 592 ETHVDRMPDPSVESFIAFIEAQDLPADSLAIRNQSDHVVSLLTPQAAAGRQWQRVIITAL 651

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              ++       + +  SL     +   +    S +    D     +     +  R   +
Sbjct: 652 QDGIWP-----NLTLRDSLLGSLHLVDILTGRASEDGGPRD--SAARTDILHDELRSFAL 704

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK-KIKLTNSINKDEWIAY 712
            ++RA + +++    +                      DE     ++   +  +      
Sbjct: 705 SLSRAQEHVMLTAVDDDEQSPSPFLHLAAPQPRPITLGDESGPLDMRSVTTAARAALHQA 764

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY-------ILNPSTIDTK 765
                  +   L       +       P   +         P         L+PS +D  
Sbjct: 765 LLREDAEQAHQLASLLAAMEPHTPASDPHTWYQAHPVSTTLPLFHELTTLPLSPSRVDVA 824

Query: 766 GKTNLESLLSDNQTF-------NRGLIIHKLLQVIFTLPEHKRKNFI-TSYCTKNAKLWP 817
              +L   L  +          + G +IH +          +    +   +   N     
Sbjct: 825 QTCSLRWALETSGGQPASGLSQSVGTLIHDVAAHAPMGTITQFTQLLDERWDQLNLPPGW 884

Query: 818 AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-Q 876
             +   L      ++      T+M  D   EV V            ISG ID++ I +  
Sbjct: 885 PAQR--LRSQAQTMVGKLAQYTSMVRDDVVEVLVEHPFTVEIAGARISGSIDRVEILRSG 942

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           +  I + KT    P + +        QL IY+  +
Sbjct: 943 DARIVDLKTGRTAPTQADTQVN---PQLGIYQLAV 974


>gi|229097011|ref|ZP_04227979.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
 gi|228686407|gb|EEL40317.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
          Length = 1028

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 110/678 (16%), Positives = 203/678 (29%), Gaps = 101/678 (14%)

Query: 33   KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92
               S S+ T     +   + L+  S  +   +    L++ F  +        +  +  + 
Sbjct: 400  HAFSKSILTQLAHEIGFGRNLKVRSFIKTKSDILEKLANEFFQKHPAKVLVDLNLKFYEV 459

Query: 93   SPDLKEKLKKSQDEFIKIRDRFNTYK----MFKSTLASLTLAKYLNAH----YEEAKKKN 144
            +  + +      ++    R    +      + +       L +Y+        E  KKK 
Sbjct: 460  TK-MMKSFWDEMEKKGLTRQEIESIDWGTVVKEEHQVLKNLFQYVFKQCEGLLEAQKKKE 518

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
              +D  D++     L  + D    ++        ++ +DE QD+   Q E++ SL     
Sbjct: 519  NAIDTGDMVRK-LKLFTQGDTLKQLQTD-----KYLFVDEFQDSDNTQIELVASL----- 567

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                 +     LF VGD KQSIY F GA+            + A      F+ + L  ++
Sbjct: 568  ----QNQLKYHLFVVGDIKQSIYRFRGAD-------YTSFTRLAERVNSSFTPVALNQNY 616

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            R+T+ +L  +DKVFS                          G       +    D +   
Sbjct: 617  RTTSSLLEKLDKVFS-------------------VWGQKCWGPKGKESLLPYTEDDRLKG 657

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
             + +  +  + L    +   +  +    I   +      S+ + R      I ++VR  K
Sbjct: 658  MKITEPTIGEFLYPNINKDNVEEKTVRQILESVDIAKQLSDDENRR-----IALVVRTNK 712

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                     R       I  V N         A+     +   +L   +    V  L+SP
Sbjct: 713  QA----LEVREWCEKAGIGTVQNLDGTFYKSDAVIHFKMMLDALLYPGEAKHVVNFLQSP 768

Query: 445  LFN--FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             F        +        +     +                 +Y+ EL  +        
Sbjct: 769  YFRYVIPTKLLVPFKGDSEKIIKFLQLHMGN---------DFTQYLDELKRL----PVMA 815

Query: 503  FFTLILGAKKGRQQFISRFG----------------------NEVIDVLDEFLNFTLRNE 540
                I+  K   Q   S +                        +    L   +N   +  
Sbjct: 816  VIQKIISEKGLLQNISSYYVVKYGDDPDIDESIKQLEIEIAVKQYEKNLYHLMNIIQKQF 875

Query: 541  QNSYSSLQELISELEQY----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             +   +L  +   L           +         V I TVH +KGLE   V +      
Sbjct: 876  DSMSGTLWNIHEWLTLQIRVNRNENEPMIETKLGVVEITTVHRSKGLEYHTVIMPKLNHS 935

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              + +    +     + DD  I  W   +   N+  + L  +     + E  RLLYV MT
Sbjct: 936  FSNKQASFYIQDEKEMVDDKRIVGWKANNFKNNH-FATLQNYESFEVEREETRLLYVAMT 994

Query: 657  RASDQLIICKHSNTSNEK 674
            RA  +LI+      +   
Sbjct: 995  RAKKRLILMMPEKINENT 1012


>gi|284050462|ref|ZP_06380672.1| UvrD/REP helicase [Arthrospira platensis str. Paraca]
 gi|291570544|dbj|BAI92816.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 809

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 94/631 (14%), Positives = 188/631 (29%), Gaps = 62/631 (9%)

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLK-EKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           L+       + T +    +    +  P+L  + + +++   +         +        
Sbjct: 192 LIEGCQFDSEETERWRRRSVLRTEVLPELALKVIHEAKSSGLTPDQLRRLGEKIPDDYQI 251

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + +A  L  +Y+E  +K  ++D++++I+    +L+       IR    Q +  +  DE Q
Sbjct: 252 MNIAAGLYDNYQELLQKQQLIDYDEMILGALRVLENP----QIRQSWQQRVFAVFEDEAQ 307

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQ 245
           D++ +Q ++I  L +D   G N+  +   L  VGD  Q+I S F  A+P    +      
Sbjct: 308 DSTPLQNQLIEILAQD--SGNNSDLANLNLVRVGDSNQAINSTFTPADPVYFRQFC---- 361

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
               N      +  +  + RS   I+   + V            D  +       R    
Sbjct: 362 ---ENCEALGRLATMDRAGRSNQIIIKAANFVLKW-------VNDKFSEFPELPFRAQ-- 409

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               +            NP+                   L   I   I ++         
Sbjct: 410 ---DIRPVDPDDPQKNANPEPHGQGVEIYQPESIYDTVNL---IFKRIFSIFQQHPE--- 460

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRF------LKNDYKISVVGNDRF-ILTDHLAI 418
                       +LVR+ +    I    R         N     +   D +         
Sbjct: 461 --------GSFAILVRENRQGEFIAKALRQPQEYEVEVNLSDYPITIFDAYESARQSHIP 512

Query: 419 KDLMALGRFILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
           ++++ L +FI            LK  S        D   +  Q  +    + Y    +  
Sbjct: 513 REMLQLLQFIHRPHSPNYLKAALKVLSDRHRIPNQDFNILAAQPEQ----FLYPGPLSPP 568

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL-NF 535
                    +    LI        ++  + +  A +  +  ++        +      N 
Sbjct: 569 QSENVSRCRQLCCSLIKARFELPVYELISFLALALQYEKSELASADKLATRISQHTAGNQ 628

Query: 536 TLRNEQNSYSSL--QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           TL     +   +   E    +E        +      +V I+T+H AKGL+   VFL   
Sbjct: 629 TLSAMLTTLDEIVSSEKFDTIETDEENSDDSIFTRPGQVTIITMHKAKGLDWDYVFLPFL 688

Query: 594 GSQVFS-----HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
             +        +   + +                  +  +   ++   +  K     E  
Sbjct: 689 HEKNIPGNLRVNPQKRFLGDFTLPEVARAQIRAYLHNYQQLPDITTAWEQAKYLKNAEEY 748

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
           RLLYV MTRA   L +          +  + 
Sbjct: 749 RLLYVAMTRAKRLLWMSAAQLAPYSWRKPEN 779


>gi|116671299|ref|YP_832232.1| UvrD/REP helicase [Arthrobacter sp. FB24]
 gi|116611408|gb|ABK04132.1| ATP-dependent DNA helicase, Rep family [Arthrobacter sp. FB24]
          Length = 726

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 104/793 (13%), Positives = 211/793 (26%), Gaps = 165/793 (20%)

Query: 2   KNRFGLSLN-ESYELIYK-DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           +  +G+     S + +           ++    + + +       T    A    Q    
Sbjct: 67  RIAYGVHSGVYSPQRLLAVTFTARAAAEMRSRLRDLGVGNVQ-ARTFHAAALRQLQFFWP 125

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
           Q +      L            + +          DL  +++ ++   +   +     + 
Sbjct: 126 QAVGGALPNLLDHKAQMIAEAARRLRLSTDRASIRDLASEIEWAKVSMLTPANYLENAQD 185

Query: 120 FKSTLAS-LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +     LT    +   YE+ K    V+DFED+++ T  +L++      +   + ++  
Sbjct: 186 RGNPGGFDLTAVARVFQSYEDVKTDRNVIDFEDVLLITVGILQEDP---KVAATVREQYR 242

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           H ++DE QD S +Q  ++                   L  VGD  Q+IYSF GA PK +L
Sbjct: 243 HFVVDEYQDVSPLQQRLLELWLG----------GRDELCVVGDASQTIYSFTGASPKHLL 292

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             K +            ++++L   +RST  ++ + + + +                   
Sbjct: 293 GFKAMYP--------GANVVKLIRDYRSTPQVVKLANDLLAG------------------ 326

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
             R G       W   +     +       +T   D   +       A  +A  I  ++ 
Sbjct: 327 -RRSGGPVADAAWAAPLKLVAQRPPGPPPQFTECADDEAE-------AATVAIKIRELLD 378

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T           A +I VL R    +               I               +
Sbjct: 379 AGTP----------ASEIAVLFRTNGQSEAYEQAL----ASAGIGYQLRGGERFFARKEV 424

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           +D +   R       + S    L   + +                        + A    
Sbjct: 425 RDAILQLRAATRAAAETSEPERLGQLVRDI----------------VASLGYTESAPHNG 468

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
              +   + +  L+ +A                                  DE +     
Sbjct: 469 GALRERWESLAALVALA----------------------------------DELV----- 489

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             +    SL + ++EL++               V + ++H AKGLE   VFLV     + 
Sbjct: 490 LSRGPQFSLSDFVNELQERSLAQHAPTVQG---VTLASLHAAKGLEWDAVFLVGLCEGLM 546

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                               +         +E  RLLYVG+TRA
Sbjct: 547 P-----------------------------------ISFADSPEDVDEERRLLYVGITRA 571

Query: 659 SDQLIICKHSNTSNEKKSN-------QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            + L +      +   ++N            D V  S    +     +   +        
Sbjct: 572 REHLSLSWSLARTPGGRANRKPSRFLDGLRPDSVASSTARGKGPAPRRKAATPAMCRVCG 631

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
              S+          +             ++    +      P  +  +           
Sbjct: 632 SMLSSGAERKVGRCSQCPPSYEEQTFDALRQWRKDVALAAEVPAFVVFTDATLTAIAEAR 691

Query: 772 SLLSDNQTFNRGL 784
               +  +   G+
Sbjct: 692 PASLEELSQLAGI 704


>gi|163785680|ref|ZP_02180212.1| Superfamily I DNA and RNA helicase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879051|gb|EDP73023.1| Superfamily I DNA and RNA helicase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 384

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 75/431 (17%), Positives = 132/431 (30%), Gaps = 89/431 (20%)

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
              N      II+L  ++RST  IL+  +KV S                        +  
Sbjct: 4   DFENDFPNTKIIKLERNYRSTQKILSAANKVISNATGR------------------WKEK 45

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            + LW       D +    +                   +  IA+ I  ++  +      
Sbjct: 46  ILTLWTDKEEGEDLKLIKLETD--------------KQESAFIAHQIKQLVEKE------ 85

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  DI +L+R    +  I          + I           +   IKD++A  R
Sbjct: 86  ---GYKYSDISILMRMSFLSRNIEEAL----VRFSIPYQIIAGVRFYERAEIKDILAYLR 138

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQHV 484
           F  + +D  +F  ++  P     +  + KI         + + +  +  +N      Q  
Sbjct: 139 FAFNPKDIQAFKRIINLPSRGIGKQTLNKIQKFYVEDWYQALKDSYESLSNRIKLNLQPF 198

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQ 541
            + I + I       P +    +  A       IS++     E I  + E  N     ++
Sbjct: 199 FEVI-DFIKEHGNEKPAESAKYLYDAIGYEDYLISKYPKDYEERIANVQELFNALDEIQK 257

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                 + L   LE+      +    + N +++MTVH AKGLE PVVF+      +F   
Sbjct: 258 RG----KTLQEFLEETSLEQAQDKIESSNSIKVMTVHAAKGLEYPVVFVAGVEDGIFPSG 313

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                      EE  RL YV +TRA + 
Sbjct: 314 RAF----------------------------------EDIEQMEEERRLFYVAITRAKEH 339

Query: 662 LIICKHSNTSN 672
           + +      S+
Sbjct: 340 VYLTMAKYRSS 350


>gi|302869751|ref|YP_003838388.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302572610|gb|ADL48812.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 1240

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 122/1048 (11%), Positives = 275/1048 (26%), Gaps = 233/1048 (22%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQA--SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89
                S  + TG    L   + L                 L     T              
Sbjct: 205  RGEPSPRLLTGPEQDLIIRELLDVVGEEPGDDPVGWPEDLRPALRT-------------- 250

Query: 90   NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC---- 145
               +  L++ L ++ +  +   +     +      A    A      Y            
Sbjct: 251  RAFAQQLRDLLMRAAERGVGPVELARLGEKLGR--ADWPAAARFLREYVAVLALRDVSNR 308

Query: 146  ---VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
                 D  +L+     +L        +     + + H+ +DE+ DT   Q +++  +   
Sbjct: 309  GSVAYDPAELVRAATGMLLDDPE---LLAAERRRLTHVYVDELADTDPAQLDLLAVVAG- 364

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                       R+L A  D   S Y+F GA+P  V       +   T +G   + + L  
Sbjct: 365  ---------GGRSLVAFADPDSSTYAFRGADPAGVTTFPHRFR---TASGAPAAQVTLTT 412

Query: 263  SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            S+R+  ++L    ++        G         R R       GTV++            
Sbjct: 413  SYRAGPELLAATARLARRLRGPAG-------HRRLRPLPGVPAGTVEVLTFR-------- 457

Query: 323  NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                             S ++ LA   A   ++++             +    + VLVR 
Sbjct: 458  --------------SATSESAWLAH--ALREAHLLDG-----------VPWSRMAVLVRS 490

Query: 383  RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE--DDLSFVCM 440
                  +  L R L      +VV  +   L    A+  L+ L R  L  +  D+ + V +
Sbjct: 491  T--GRQLPSLRRALHTAGVPTVVHGEDLPLHLQPAVAPLLLLLRCALEPDRLDEEAAVAL 548

Query: 441  LKSPLFNFSEDDIFKICT-----------QRHETETVYEYIQK------FANCGISKFQH 483
            L SPL         ++             +R   E + E ++             +  Q 
Sbjct: 549  LHSPLGGADPLAERRLRQGLRALALAAGDRRPSGELLVEALRDPAELATIERRWAAPAQA 608

Query: 484  VIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFI-----------------SRFGNE 524
            V   +      A     +  D    +       +++                        
Sbjct: 609  VAHLLATARETAGRPGATVEDVLWAVWRESGLAERWAGAITRGRAATGEHETAQRWRAEA 668

Query: 525  VIDVLDE---FLNFTLRN-EQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVH 578
                LD      +   R  ++   +  +  +  +  ++ P     A +   + VR++T H
Sbjct: 669  ADRDLDAVLVLFDAAARFTDRLPGARTEVFLDHVLGQELPADTLAAAADRGDAVRLLTAH 728

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             AKGLE  +V +      V+    ++   +           + +   ++    +   +  
Sbjct: 729  AAKGLEWDLVAVAGVQEGVWPDLRLRGSLL------GSERLVDVLAGRADGAGLRASLVG 782

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
               +  +E  RL +V ++RA  +L++   ++ +     ++      +++    D      
Sbjct: 783  QTSALLDEERRLFHVAISRARRRLLVTAVASAAVGGDDHEEQPSRFLHELAAADPPATGG 842

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLE-------------REETIKQLMDEQKIPKKLFS 745
              T     +         +                     R   +   +       +   
Sbjct: 843  GGTAPTGPNPTGPAPTGPNPTGPNATGNGPTGNGPTRTAMRGGIVDGPVPHGDEHPQDGP 902

Query: 746  PIKNDINEPYI---LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
            P    +  P     L+    + +      +     +    G +       +         
Sbjct: 903  PAALPVTLPPRGLTLSALVAELRTAVTDPATPITRRHAAAGELARLAAAGVPGAHPDDWW 962

Query: 803  NF------------------------------ITSYCTKNAKLWPAK------------- 819
                                            +     ++    PA              
Sbjct: 963  GLRGLSDDRPLVDEGEPVRVTPSAMESALRCSLRWLLERHGGSGPASAAQGVGNLVHAAA 1022

Query: 820  --------EYKNLLLSITRLLENPMMTTAMSCDSYS------------------------ 847
                    + + LL  +    +   +                                  
Sbjct: 1023 MLAEDASVDREALLEYVAARFDAIELAARWMAGPERQRAEAMVDKLLRWLAGNPRRLLAI 1082

Query: 848  EVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            E   + +++ P + I ++GR+D++ +     + + + KT          +      QL  
Sbjct: 1083 EHEFAVRLDDPSRPIELTGRVDRLEVDDEGRLVVIDLKTGKSTAVTEREVAEH--PQLGA 1140

Query: 907  YEKILK----DSYPNKSLVCLLIYVSEP 930
            Y+  ++      +  +     L+ +   
Sbjct: 1141 YQAAVEAGGFAEFGEEPGGAALVQLGTG 1168


>gi|269102933|ref|ZP_06155630.1| ATP-dependent DNA helicase PcrA [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162831|gb|EEZ41327.1| ATP-dependent DNA helicase PcrA [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 774

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 125/757 (16%), Positives = 226/757 (29%), Gaps = 118/757 (15%)

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L+   L Q    +K+   ++   K P   E L                        +  
Sbjct: 111 TLAKQVLRQMGAQEKS-YQKQQTYKDPKTIELLMNFIGLVKAYMLPPKEVFDLSDISSEY 169

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                   ++E  +++  +L F+D ++ T  LL+  +    IR    Q+   I++DE QD
Sbjct: 170 QFIIEAFRNFETLRQERKLLFFDDWLVETVKLLQNNEA---IRQYYHQQCRFIVVDEFQD 226

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            +  Q+++++ L                L AVGD  Q IY + G+ P+ +L  +R     
Sbjct: 227 INTAQYQLLKQLLG----------PQSQLVAVGDVDQCIYKWRGSAPQFMLNFERDF--- 273

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                       L  +FR    +      + S   N          T+ H S        
Sbjct: 274 -----APAKTYSLSRTFRFGHSLALAASHLISNNRNRF----HDFQTVSHESV------- 317

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                     D+  +   +      IA  I   +          
Sbjct: 318 -------------------------SDTQIEVVGSERQVGEIAQAIQQFLEQGG------ 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL-MALGR 426
               QAKD+ +LVR+   T L        K  Y++ V           L +  L  A+GR
Sbjct: 347 ----QAKDVAILVRRWSQTLLFELAFLTKKIPYQMPVPSVLGHSREVRLLMDILGFAIGR 402

Query: 427 FILS-QEDDLSF-VCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGISKFQ- 482
           F     +   SF   ++  P       D+  +C +  +     +      A    S    
Sbjct: 403 FEQQSPQQRSSFLFNIMAFPHCYVPNKDLKPLCDELANRPIEQWRAYVTKAEKIYSALNL 462

Query: 483 ----HVIKYIHELIHIAQF--CSPHDFF--TLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                 ++ +  L    QF     +  +     L     + +  +    E ++ LD    
Sbjct: 463 DSFIDRVELLITLRRKGQFKALDVYRQYRKESQLDNWIWKTEATASEIEEAVERLDSVET 522

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDT 593
                +Q+   +LQ      +Q     +      + N V++ T+  AKG E   V+L   
Sbjct: 523 VLESMDQHCEKALQYFEYYTQQSTHHDQHQAQQPNINGVQVTTIFRAKGCEFSQVYLPYW 582

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               F + +     +                                 +  EE  RL YV
Sbjct: 583 DKDAFPYMNRSSAGL--------------------------------AADTEEERRLAYV 610

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            MTRA D   +        +K+S  R   +       +   V +        + E   ++
Sbjct: 611 AMTRAKDVARVYYTVEP-KKKESYVRANKNASQFVLESKVDVAQTVGEKLYQEGELPHHK 669

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-NPSTIDTKGKTNLES 772
               +     L R + + Q   E++I            +  + L  P   +         
Sbjct: 670 SPIVYGYYQRLGRLDDMAQPPKEREIELPSSDGAYQQYSYEWALNQPLPENADKLIRTLM 729

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
                + F     + +LL+ I T+   K+K       
Sbjct: 730 RTKKQKYFE--TELARLLREIQTVGSTKQKVLANRLI 764


>gi|226226146|ref|YP_002760252.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
 gi|226089337|dbj|BAH37782.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27]
          Length = 702

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 86/569 (15%), Positives = 165/569 (28%), Gaps = 109/569 (19%)

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           + +  I  +I    +H+L+DE QDT+ +Q  ++R L            +   +  VGD+ 
Sbjct: 230 EQAPPIAEQIRALYDHVLVDEYQDTNPLQSRILRGLC-----------TNGHITVVGDDA 278

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY+F GA  + +L                  I+ L  ++RST  IL   + + S    
Sbjct: 279 QSIYAFRGATIRNILDFPHEFP--------GTRIVTLEQNYRSTPHILDSTNVLISRSME 330

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                  +  T   R            W   V    +Q                      
Sbjct: 331 RYSKQLFTARTDGERP-----------WLVTVRDESAQT--------------------- 358

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                +   +  +    T            +++ VL R    +  +        ++ +I 
Sbjct: 359 ---AFVVDRLLELHEQGTPL----------REMAVLFRAGYLSADLEIEL----SNRRIP 401

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
                     +   IKD++A  R + +  D++S+  +L+  L    +          ++ 
Sbjct: 402 YEKWGGLKFLEAAHIKDILAFVRLLENPRDEVSWYRLLR-LLPGVGDATARNAIELLNQH 460

Query: 464 ETVYEYI-----QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                 I        A  G+     +   +  +    +  SP +   L+           
Sbjct: 461 GWAPMAIGAVKAPARAKPGLLAMAALFDGMGRVERADRPHSPSETIRLVRQLYDPLLNAT 520

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                  +  LD+          +    L  L  E       +    +   + + + TVH
Sbjct: 521 YDDAPPRLADLDQLEIIAAGY-TDRTEFLAALALEPPSSTQDLAIGSTDEDDALILSTVH 579

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKG E   VF++     VF                                        
Sbjct: 580 SAKGKEWDAVFVIHASDGVFPM----------------------------------ARAA 605

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           +  +  EE  RLLYV +TRA + L +    ++   +     ++  +            + 
Sbjct: 606 VDDAQIEEERRLLYVALTRARNDLYVVYPLHSYATRTGADFSYTQLSRFLDPGVRNTMQR 665

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLERE 727
                +     +  E      E     R 
Sbjct: 666 VTLGDVPDTPALRGELGLTPVEPVVDLRA 694


>gi|297202235|ref|ZP_06919632.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
 gi|197710248|gb|EDY54282.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083]
          Length = 774

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 91/616 (14%), Positives = 171/616 (27%), Gaps = 162/616 (26%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                K  + T  +      L A YE+ K+   V+DFED+++ T  +L+       I  +
Sbjct: 212 ALAAAKAGRETPRAAAEIAQLYAAYEDLKRDRAVIDFEDVLLLTVAILQD---RHDIAEQ 268

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +  +  H ++DE QD S +Q  ++                   L  VGD  Q+IYSF GA
Sbjct: 269 VRSQYQHFVVDEYQDVSPLQQRLLELWLG----------RRDNLCVVGDASQTIYSFTGA 318

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P  +L  +              ++++L   +RST  ++ + + + +           + 
Sbjct: 319 TPDHLLDFRTR--------HPGATVVKLVRDYRSTPQVVHLANGLLAQARGR-----AAD 365

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             +   S R      V                    +T Y D   +       A   A  
Sbjct: 366 HRLELISQRRPGPEPV--------------------YTEYTDEPAE-------AEGAARR 398

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I  ++             ++A +I +L R    +            D  +          
Sbjct: 399 IRELMDAG----------VRASEIAILFRTNSQSETYEQAL----ADAGVPYQLRGAERF 444

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            D   ++  +   R       + + +             D       +       E    
Sbjct: 445 FDRPEVRRAIVNLRGAARFGGNDARL-------------DDAVTLPSQVRAVLSGEGWTS 491

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
               G    +   + +  L                                         
Sbjct: 492 EPPAGSGAVRERWESLAAL----------------------------------------- 510

Query: 533 LNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           +N         S ++L +L++EL++               V + ++H+AKGLE   VFLV
Sbjct: 511 VNLAQDFAAARSGATLNDLVAELDERAGAQHAPTVEG---VTLASLHSAKGLEWDAVFLV 567

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +                                     +         EE  RLL
Sbjct: 568 GVAEGMMP-----------------------------------ITYAKTDDEIEEERRLL 592

Query: 652 YVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           YVG+TRA ++L +      +           + D +               +  + +   
Sbjct: 593 YVGVTRARERLHVSWSLSRSPGGRPNRRPSRFLDGLRPGSTATTGRTAGGRSGGVERGFT 652

Query: 710 IAYEWSTHHPENTPLE 725
                +    + TP  
Sbjct: 653 SPVGAAPRRTQRTPAR 668


>gi|240172136|ref|ZP_04750795.1| ATP-dependent DNA helicase [Mycobacterium kansasii ATCC 12478]
          Length = 1051

 Score =  170 bits (431), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 117/998 (11%), Positives = 252/998 (25%), Gaps = 186/998 (18%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           L  R      E    +              I + ++  +E    +     Q L  A  T 
Sbjct: 101 LLRRNAERTGEGPPRLLTSAEQDAI-----IRELLAGDLEDAAASQSAWPQHLWPALSTA 155

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                   L +    +   P  ++         P+       +   F +  ++    +  
Sbjct: 156 GFANELRNLLARCFERGVDPW-DLERLGRRCGHPEWI-----AAGRFARQYEQVMLLRSA 209

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
               A    A+ L A               +L+    D      V   +       +  +
Sbjct: 210 AGMAAPQATARALGAA--------------ELVGAALDAFA---VDPGLLAAERARVRLL 252

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+D+ Q        ++R+L                    GD  Q+++ F G EP  +L  
Sbjct: 253 LVDDAQQLDPQAARLVRALVAGTERA----------VVAGDPNQAVFGFRGGEPAGLL-- 300

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                     A     ++ L +S R    +   V  +                       
Sbjct: 301 --------GGAVDGGRLVTLTVSHRCAPAVARAVSGITRRLPGGS--------------- 337

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                              +    +         ++   +SA   A  IA T+       
Sbjct: 338 -------------------AGKQIEGTGEQDGSVAVRLATSAHAEAAMIADTLRR----- 373

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIK 419
                     +    + V+VR                    + V        L+   A  
Sbjct: 374 ----AHVIDGVPWSQMAVIVRSVPRAAARLPR---ALAAAGVPVAMPTMGGSLSQEPAPA 426

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-------------- 465
            L+ +             + +L  P+       + ++        +              
Sbjct: 427 ALLTVLAATADGLTGERALALLTGPIGRVDPVTLRQLRRTLQRGRSGDSPGDFGDVLAQT 486

Query: 466 ----VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI--- 518
                  + Q          +             Q   P             + +++   
Sbjct: 487 LSPEAESHPQFSGPQAGPLRRVRAVLAAAARCHRQGQDPRYTLWAAWHRSGLQSRWLTAS 546

Query: 519 ---SRFGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPP-TIKRAHSANHN 570
                 G +    L+      + T +   + S +SL+ LI  +       +     +   
Sbjct: 547 ERGGPAGVQAARDLELVTTLFDITDQYVSRTSGASLRGLIEYVTALQLPPVSAEPVSQTQ 606

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V +++ H A G E  +V +      ++ +   +   +      D    +          
Sbjct: 607 QVTVLSAHAALGHEWDLVVIAGLQEGLWPNTIPRGGVLATQRLLDELDGVTQS------- 659

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYD 687
                    +     E  RLL   M RA  +L++      +    ++ +    ++  +  
Sbjct: 660 ------ASARAPLLAEERRLLVAAMGRARRRLLVTAVDNDAGGGGQEPALPSAFFFEIAR 713

Query: 688 SFHNDERVKKIKLTNSI----NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ------ 737
                      +  ++                   P+ T  +           +      
Sbjct: 714 LADGGGEPAAAQAESAPRVLSAAAVVGRLRAVVCAPDGTVDDAARACAATQLARLAMAGV 773

Query: 738 --KIPKKLFSPIKNDINEP-------YILNPSTIDTKGKTNLESLLSDNQTF-------N 781
               P      I    +EP         L PS++ T  +  L  L   +           
Sbjct: 774 AGADPDGWHGLIPVSTSEPLYGSGDVVTLTPSSLQTLSECPLRWLTERHGGAKPRELRSA 833

Query: 782 RGLIIHKLLQVIFTLPEHKRKNF--ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            G ++H L+        H       +      +A  + + E       I   +E      
Sbjct: 834 VGSVLHALIAGPGRSEAHLLAELDRVWRRLPFDASWYSSNELARHRAMIQSFVE----WR 889

Query: 840 AMSCDSYSEVSVSGKIN-------CPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQ 891
           A +    +EV V  +++            I + GR+D++       + I + KT      
Sbjct: 890 ARTRGELTEVGVEIEVDGVLQTRRDDGGKIRLRGRVDRLERDGAGRLVIVDVKTGKTPVS 949

Query: 892 EIEHIPYTHIAQLSIYEKILKD-SYP--NKSLVCLLIY 926
           + +       AQL++Y+  + +   P  ++     L+Y
Sbjct: 950 KDDAQQ---HAQLAMYQLAVAEGMVPAGDEPGGARLVY 984


>gi|296446499|ref|ZP_06888442.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
 gi|296255995|gb|EFH03079.1| UvrD/REP helicase [Methylosinus trichosporium OB3b]
          Length = 1135

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 108/748 (14%), Positives = 208/748 (27%), Gaps = 105/748 (14%)

Query: 1   LKNRFGL-SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           L  R G    + +  +            +   ++ +    E G          L     +
Sbjct: 255 LAERIGAQHPDAAAAMWIGTFHAFGLNLIQRFHREMGYESEPGLIDRPDAIALLLDRVAS 314

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
             ++    L          T +   +   I++   ++    +         RD   +   
Sbjct: 315 LDLKHYRDLY-------DPTMKLRDVLGAISRAQDEVVSPDRYEALAAAMARDADASGTG 367

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            ++   +  +A  +   YE+ K++   +DF DL++     L   +  A +R ++  E  H
Sbjct: 368 REAAAKAHEVA-RIYRCYEDIKRERGRVDFGDLVVRCVTFL---EARADVRQQLRAEFRH 423

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           ILIDE QD +     ++++LT++           R L+ VGD +QSIY F GA    + R
Sbjct: 424 ILIDEYQDVNRASVRLLQALTDN----------GRNLWCVGDIRQSIYRFRGASSFNLAR 473

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +       T      +   L ++FRST +I+            A+ +     T    ++
Sbjct: 474 FR-------TEDFSGGTGGRLDVNFRSTQEIVDAYGAF------AKDMPVTGATKASLKA 520

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
           +R      V+               + ++  +  ++L   +                   
Sbjct: 521 NRGASGHPVEFR-----TAQGDNGAEMDALAASIEALNASNR------------------ 557

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                         +   VL         I            I V+      L +   ++
Sbjct: 558 ------------SYRHQAVLCSGNDRLNKIGAGLEA----RGIPVLYLG--NLFERPEVR 599

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           DL+A    ++              P    S  ++  I                       
Sbjct: 600 DLLAWLSLLIDPR-AAGLARRAAVPALALSLAEVAAILAHARGQSGPAPLAWCRDAISSD 658

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--------VLDE 531
                I  +     + +   P       L      +   +       D         + +
Sbjct: 659 LSPEGIAALAHHREVTEGLGPDADPWYALALFLLDRTRTAATIASAADVGSRAQGIAVWQ 718

Query: 532 FLNFTLRNEQNSYSS--LQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLES 585
           F+NF        Y +  L + I +L               +   N VR+MT+H +KGLE 
Sbjct: 719 FMNFVRAQPGGGYRTQRLLDRIRQLVLLSDDRDLRNLPDAAKGINAVRLMTMHGSKGLEF 778

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVV +                   P+                         +   +  +E
Sbjct: 779 PVVHIPGMNLNTLPRSPQAPACPPPAGL--------------VKGADGRGREITDREQRE 824

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E   L YV ++RA D LI+     T+         +   +                    
Sbjct: 825 EQECLFYVALSRAEDTLILYAPDRTAAAATRQPSPFIVRLGADVLRTRVPIAAPGEEDPP 884

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQL 733
           +                 L   E   + 
Sbjct: 885 EPNTDVTFPCEPVLTEAQLALYERCPRR 912


>gi|310658483|ref|YP_003936204.1| ATP-dependent DNA helicase [Clostridium sticklandii DSM 519]
 gi|308825261|emb|CBH21299.1| putative ATP-dependent DNA helicase [Clostridium sticklandii]
          Length = 599

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 101/568 (17%), Positives = 180/568 (31%), Gaps = 131/568 (23%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              K +   Y    + N  LDF+D++  T+ L+K       I   I +   + +IDE QD
Sbjct: 156 DFIKTIYIKYNSWLEDNNKLDFDDILSKTHHLVKSNPH---ILNLIRKRYMYFIIDEFQD 212

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q++ IR             SS   LF VGDE QSIY F GA P  ++      +  
Sbjct: 213 INKVQFDTIRLFL----------SSDENLFVVGDEDQSIYGFRGASPVFMVNFTNYFKN- 261

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    I  +  S+R   +IL V +++ S  ++    + +S              G 
Sbjct: 262 -------AKIYPIIKSYRCPPEILNVANELISKNKSRTSKTIESG---------KNNQGF 305

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V++ +                                 A+ IA  I              
Sbjct: 306 VRIIKYTDVIE--------------------------QAKNIASEIKQ------------ 327

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGR 426
               ++   +++ R   +        R    DY I     D+ F    +   KD+M+  +
Sbjct: 328 ---SKSTSNMIISRTNFEILPFIKSMR----DYNIKFKIKDKEFNFFSNFIFKDIMSYLK 380

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
              +   D     +   P    +              +  +  I         K   +  
Sbjct: 381 LSQNYSLDQ-INRIRNKPDRGLNYI----------HNDDDFRCISVSKIKKTIKLSVLKN 429

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF---TLRNEQNS 543
            I  L +++   +  D     +G       +  ++G + I+ L EF       + NE + 
Sbjct: 430 QISNLKNLSFIDAV-DCIRTTIGYDNYLISYSKKYGID-IEYLYEFFEVFYSLVDNETSI 487

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + +  L  E +    +      ++ + V ++T H +KGLE+  +F V      F H   
Sbjct: 488 KAGINMLEKEYKSQIISSLNNSISSCD-VLLVTAHASKGLEADNIFWVSVNEDQFPH--- 543

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                              ++ +  EE  RL YV ++RA   L 
Sbjct: 544 -----------------------------------IRANDIEEERRLAYVAISRAKKNLY 568

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           I   S    +         D+      N
Sbjct: 569 ISYLSMNKRKIAFPSEFLLDVQKCINKN 596


>gi|319949237|ref|ZP_08023321.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319437104|gb|EFV92140.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 519

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/517 (12%), Positives = 140/517 (27%), Gaps = 81/517 (15%)

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
                    LG     +      G E  + LD              + L   ++ L+   
Sbjct: 2   RLVAAAEQALGLDAEVRLRQRAGGGEAREQLDALQEVAAGFRPERGTGLDAFLAYLDLAR 61

Query: 559 PTI----KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM----- 609
                  +   ++    V+I+TVH+AKGLE  +V +      VF      +  +      
Sbjct: 62  SIDGGLARGEVASTPGRVQILTVHSAKGLEWEIVAVPHLADGVFPSGQPPQTSVRTATQL 121

Query: 610 --------PSLNDDPGIPIWIPQSKSRNNIVSDL----IKHLKKSTQEEYNRLLYVGMTR 657
                    + ++  G+P+      +   ++ +     IK +++ + +E  RL YV +TR
Sbjct: 122 PEQLRGDRETEDNPGGVPVPRLDGVTDRKLLEEALGKHIKRVERRSLDEDRRLFYVAVTR 181

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWY---DMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           A   L++       +       + +    +          V    +      +   A   
Sbjct: 182 AEQTLLLSGSHWLGSATTPKGPSEFLGDALDACGGEPPLGVIDHLVVTPSPTNPATAGTV 241

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN------------------------- 749
               P     +R    + +     +  +  +P ++                         
Sbjct: 242 EATWPREAAPDRLAAARAVETAVPVDPEAQAPPESGPARRWHLAAASLLADARRAAQRRD 301

Query: 750 DINEPYILNPSTI--------DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
           +++ P  L    I        +   +         ++   RG   H  L+        + 
Sbjct: 302 EVHLPRRLTAGEIVAMATDPAEFADRLRRPVPFRPDRFARRGTRFHAWLEH-------RY 354

Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
                                 L  +    L+     +  +    +  +V          
Sbjct: 355 GATHLLDIDDLPGAGDEGAVDGLSEADLTALQEAFEASRWAR--MTPEAVEVPFEVGLGG 412

Query: 862 IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK--- 918
            ++ GR+D +        + ++KT        E        QL++Y          +   
Sbjct: 413 HLLRGRMDAVFADGDGWIVVDWKTGRVP---AERDMPAVALQLAVYRYAWAKVVGARLGR 469

Query: 919 -----SLVCLLIYVSEPKVFI----IPQNKLNKAFAE 946
                S+     YV   +           +L +  AE
Sbjct: 470 TVELGSVRAAFHYVRSGRTIEPAGLPDAEELLRILAE 506


>gi|187939873|gb|ACD39011.1| helicase-related protein [Pseudomonas aeruginosa]
          Length = 1126

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 112/711 (15%), Positives = 217/711 (30%), Gaps = 106/711 (14%)

Query: 3   NRFGLSLNESYEL---IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           NR    + E       +      +  F    ++           P   +     +     
Sbjct: 250 NRASAEMAERIARKRPLEAAALWIGTFHRFGLDLLRRFHDLADLPADPRLMDRTEAVELL 309

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKIRDRFNTYK 118
           +    R  L     L        +I++     K   +  +  ++   + +   +  +   
Sbjct: 310 EYEFSRLGLEHYRDLYDPSQNISDILSAISRAKDEVVDARRYRELAQQMLDDTESPDAIG 369

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +  L        +   YE+ K++   +DF DL++    LL+  +    +R ++ Q  +
Sbjct: 370 AAERALE----VAKVYEAYEDLKRQAGCVDFGDLVMRPVQLLESNEA---MRQQLQQTYD 422

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           H+L+DE QD +     ++ +L                L+ VGD KQSIY F GA    + 
Sbjct: 423 HVLVDEYQDVNHSSVRLLTAL----------KPQGLNLWVVGDAKQSIYRFRGASSFNIS 472

Query: 239 REK-RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           R          T          L  ++RS  +I+      F+   +  G           
Sbjct: 473 RFGNEDFPGGVTGY--------LECNYRSVQEIVDTFSD-FAAGMSTGGAHYW------L 517

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
           R+ R     + +L         S                            +A +I  M 
Sbjct: 518 RADRAPSFSSPELQTVTSGDQTSAA--------------------------LAESIERMR 551

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                           ++  VL R       +      L     I V+      L +   
Sbjct: 552 AAG----------FSYRNQAVLCRGNDKLSELGQELERL----GIPVLFLG--SLFEREE 595

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANC 476
           +KDL+AL   ++ +   +  + +   P F  S +DI  +    R     + ++  + +  
Sbjct: 596 VKDLVALLSLLIDRR-KMGLIRIGCWPDFAISLEDIVLVFEHLREIDAQIDDWGSELSGL 654

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLIL---GAKKGRQQFISRFGNEVIDV-LDEF 532
                  ++     L    Q  SP       L        +    SR  ++   + + +F
Sbjct: 655 SALGKASLVSLRQALEGFDQTSSPWTVLATALLDRTRMAAQVALSSRVVDQARGIAIWQF 714

Query: 533 LNFTLRNEQNSY-------SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           +NF                + ++ L+   +          +   + VR+MT+H AKGLE 
Sbjct: 715 MNFVRAQPAGPGLPIVRLMNRIRRLLRLRDDRDLRQLPTAAQGIDAVRLMTIHGAKGLEF 774

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVV L           +       P                             + +  +
Sbjct: 775 PVVHLTGANQDSMPGAYRTARCPPPDGMVMG--------------AEGSSDSVGRAAHAQ 820

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
           E   L YV M+RA D+L +   ++ SN  + +   +   + +    + R  
Sbjct: 821 EQECLFYVAMSRARDRLFLYAVTHKSNGHRRSLSDYVHRLCNLPQVEARPS 871


>gi|294621038|ref|ZP_06700230.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317]
 gi|291599352|gb|EFF30377.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317]
          Length = 326

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 117/310 (37%), Gaps = 38/310 (12%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + +   +V+  N             + ++   +  +         
Sbjct: 31  GAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGGEDVWVST 90

Query: 66  FSLLSSFFLTQK--------------FTPQKNIITQEINKKSPDLKEK-LKKSQDEFIKI 110
           F  +    L +                + Q  ++ + + + + D K+   +       + 
Sbjct: 91  FHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKELNIDPKKYDPRSILGTISQA 150

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T + F     S    +A    A Y++  + N  +DF+DLI+NT  L ++   S  
Sbjct: 151 KNSLQTPQDFAKMQGSYYEEIAAKCYAAYQKELQYNQCMDFDDLIMNTIRLFEEHPDS-- 208

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  + ++I +DE QDT+  Q+ ++  L   F          R L  VGD  QSIY 
Sbjct: 209 -LTYYQNKFHYIHVDEYQDTNHAQYTLVNLLAGRF----------RNLCVVGDADQSIYG 257

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA+ + +L  ++             ++I L  ++RST +IL+  ++V     N +   
Sbjct: 258 WRGADMQNILDFEKDYP--------DAAVILLEQNYRSTKNILSAANQVIENNSNRKPKK 309

Query: 289 EDSTTTIRHR 298
                  R +
Sbjct: 310 LVDRKQRRKQ 319


>gi|34557966|ref|NP_907781.1| ATP-dependent helicase [Wolinella succinogenes DSM 1740]
 gi|34483684|emb|CAE10681.1| ATP-DEPENDENT HELICASE [Wolinella succinogenes]
          Length = 675

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/624 (14%), Positives = 175/624 (28%), Gaps = 187/624 (29%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L + +     +   KK+   +D+ DL+     LL + ++S     K +     +L+DE Q
Sbjct: 165 LDIYEDAWGEFSALKKEYGYVDYNDLL-----LLYREEMS-----KEESPFKEVLVDEYQ 214

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ +Q+ +++++            +P +LF VGD  QSIY+F+GA+   +   ++  + 
Sbjct: 215 DTNPLQYSILQAI------------NPPSLFCVGDYDQSIYAFNGADISIIASFEKSFE- 261

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     I  L  ++RSTA IL + + V    E       +                
Sbjct: 262 -------DARIFTLTKNYRSTAPILALANSVIEKNERIYPKRLEVVKQK----------- 303

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                   +    L       +  + IA  I             
Sbjct: 304 ----------------------VAAPPPRLLVYDELFLQYQAIARRIRE----------- 330

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    I V+ R       I    R L     I           D   I  ++ +  
Sbjct: 331 --STKPHAQIAVIFRNNSSADGIEASLREL----GIPSKRKGGVSFFDSKEIALMLDIAS 384

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--------------------------- 459
            + + +D ++F+ +L S            I                              
Sbjct: 385 LLHNPKDMMAFIHVL-SYGKGIGSAIAKDIYEALTELGKGNAITGLLHPDLEVKEPYKRR 443

Query: 460 -------------------RHETETVYEYIQKFANCGISKFQH--------VIKYIHELI 492
                              R +     E           K             + I    
Sbjct: 444 AKNTQMGLFDDFFELGSVSRFKDLGFEERFLGNGILKHPKLTKEGAEFLYRFYQGIKAFR 503

Query: 493 HIA---------QFCSPHDFFTLILGAKKGRQQ---FISRFGNEVIDVLDEFLNFTLRNE 540
            ++              +      L  ++  Q+          E ++ ++  +       
Sbjct: 504 ALSNPSALIVKIFSSELYQGIARNLAKERATQKDGSIHEDRYKEALERIERKVRLLRDL- 562

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              Y SL   ++ +      +     +    V +++VH AKGLE   V+++D     F +
Sbjct: 563 SGHYESLGRFLNAMILGSGEM-----SEGEGVNLLSVHGAKGLEYEEVYIIDLMDGRFPN 617

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                      +    EE  RL YV +TRA +
Sbjct: 618 R----------------------------------KLMAQNGNIEEERRLFYVAVTRAKE 643

Query: 661 QLIICKHSNTSNEKKSNQRTWYDM 684
            L +    + + +  +   + + +
Sbjct: 644 LLYLSYAKSDAIKNLTYAPSQFLL 667


>gi|197303397|ref|ZP_03168436.1| hypothetical protein RUMLAC_02119 [Ruminococcus lactaris ATCC
           29176]
 gi|197297395|gb|EDY31956.1| hypothetical protein RUMLAC_02119 [Ruminococcus lactaris ATCC
           29176]
          Length = 723

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/541 (14%), Positives = 153/541 (28%), Gaps = 111/541 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y    +   ++D++D ++    +L+       +     +   +I +DE QDTS IQ
Sbjct: 183 IYKEYCRQLRAKGLMDYDDQMVYAYTMLRS---VPELLRHFQELYPYICVDEAQDTSKIQ 239

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +I  L           S    LF VGDE QSIY F  A P+ +L  ++          
Sbjct: 240 HAIIALLA----------SGSENLFMVGDEDQSIYGFRAAYPEALLTFEKNYP------- 282

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               ++ +  +FRS A I+   D+              +          I        + 
Sbjct: 283 -DAKVLLMEENFRSDARIVLGADRFIQKNTLRHEKHMKAARKPVSDIREISLRSRKAQYT 341

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            +    +   +     +      LP               + +++  + I          
Sbjct: 342 YLAKLAEGCTSQTAILYRDNECILP---------------LVDLLERNGIPY-------- 378

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                                                     H  I D++ + +   +  
Sbjct: 379 ------------QMRNAE-------------------LSFFSHRTILDIINIIKLAQNPM 407

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D  +F+ +         + D  +I     E       +              ++ +   +
Sbjct: 408 DTEAFLQIYYKIGTYLRKQDAIRIARISEEKRIPVLDVAAEDPDLNGHVLGSVRSMRTHL 467

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQELI 551
                 S       I+     ++       ++   ++L    +           S  EL 
Sbjct: 468 QNLLQDSGERAIYRIMQFMGYQEYLNRSGMSDSKLEILRILGSRA--------DSPMELA 519

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             LEQ    I+         + + T+H +KGLE   V+L+D    +      + +     
Sbjct: 520 ERLEQLKVMIREKEPDRKCPLILSTIHASKGLEYDSVYLIDVADGILPESIPQNL----- 574

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       +    EE  RL YVG+TRA D L +   +  S
Sbjct: 575 ----------------------HQASAEELKAYEEERRLFYVGVTRAKDHLTLFTTNRPS 612

Query: 672 N 672
            
Sbjct: 613 T 613


>gi|222444703|ref|ZP_03607218.1| hypothetical protein METSMIALI_00316 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434268|gb|EEE41433.1| hypothetical protein METSMIALI_00316 [Methanobrevibacter smithii
           DSM 2375]
          Length = 994

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 130/865 (15%), Positives = 231/865 (26%), Gaps = 202/865 (23%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y E       +D+  + I   + LK+   +         +  +IL+DE QDT  +Q 
Sbjct: 205 YVKYLELLDLFNAVDYNTVQIKFLESLKENPET---------QYTNILVDEFQDTDPVQA 255

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+   L ++               AVGD  QSIYSF G+        +   ++       
Sbjct: 256 EIFEILLKNAES----------FTAVGDVDQSIYSFRGS-------FRDYFEEFYNKYN- 297

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +I L  ++RST +I+   +                      ++S             
Sbjct: 298 -AELISLNYNYRSTNNIIRTSEAFIKPQRKEYSKKYLVGARNEDKASY------------ 344

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 + +       A++I   I ++     I         Q 
Sbjct: 345 ----------------------ILESLDPQEEAQKIFNLIKDLKDNGKIR--------QY 374

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            D+ +L R       I FL    K    IS   +    L +   +K ++ L  +I  + D
Sbjct: 375 SDVAILYRSIVSNKNIPFLIDEFK-KNDISYHISGTEDLIESDEVKSILTLFYYIARKLD 433

Query: 434 DLSFVCMLK------SPLFNFSE------------------DDIFKICTQRHETETVYEY 469
               +  L+                                 + F+    + E E  +E 
Sbjct: 434 YSYGMSNLEKEWLNLRAFCGIDFIPKFRKLSVETKRYLMELQENFENDVLKTEKEVYFEL 493

Query: 470 IQKFANCGI-------------SKFQHV------IKYIHELIHIAQFCSPHDFFTLI--- 507
             K +                   F+ V      +  I +      F         +   
Sbjct: 494 TGKKSRKNKFNGVFTRNEDVLIEIFKRVNKPVVDLDLIEDAGDREFFTELEKLRENVFSS 553

Query: 508 ---------------LGAKKGRQQFISRFGNE--VIDVLDEFLNFTLRNEQ-NSYSSLQE 549
                          L         +   G+    ++ L +        E   S   ++ 
Sbjct: 554 DDEDKLTILEVYYELLNLCGYFDDLVINNGDYELELENLSKISRTIFNYESIISAKDVRG 613

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L   L           S++ + V++MTVH AKGLE PV  +       F      +  + 
Sbjct: 614 LFFFLTNV-IEGYGTSSSDVDGVQLMTVHKAKGLEFPVTIVSSLSEYNFPL--APRDPMR 670

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
              N +     + P         S+  +        E NR++YV MTRA D L++     
Sbjct: 671 EKDNINKDDTFYTPNKFLEYKDCSEADEVNL--GLAEENRVIYVAMTRAQDILVLSVVGK 728

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
              E       +   +     +   V      N +                         
Sbjct: 729 MPEEICRISNYFNKNLDLDNMSISSVGSKPEENKL------------------------- 763

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
               +           P + ++        S  +                   G IIH+ 
Sbjct: 764 ---NLSYSSFADYNNCPWRYNLLNKLHFKVSQKEVTKM---------------GSIIHEA 805

Query: 790 LQVIF---TLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
           L VI           K  +               +E+ + + SI                
Sbjct: 806 LDVINQEIKDSGEISKENMEKIAKDTYYLHGGTDEEFDDYMDSIFDYYNEIGF------- 858

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
             + V      +  + +   +G ID I  +      I +YK +        +    +  Q
Sbjct: 859 DITVVDSEVPFSIDRDNYRFNGAIDLIYKNQNGEYGILDYK-NTIFKD---YNREKYAQQ 914

Query: 904 LSIYEKILK--DSYPNKSLVCLLIY 926
           L  Y   LK    Y +  +    IY
Sbjct: 915 LLTYILALKNDSKYCDIEITEAKIY 939


>gi|325846458|ref|ZP_08169373.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481216|gb|EGC84257.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 600

 Score =  170 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 94/557 (16%), Positives = 173/557 (31%), Gaps = 118/557 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            K +   YE  KK+  +LDF+D+ +    LL        +   I  +  +  +DE QDTS
Sbjct: 154 VKEIYQTYERIKKEKHLLDFDDMQVYALKLLDD----QSLLRSIKNKYKYFQLDEGQDTS 209

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L+Q++++  +                L  V D+ QSIYSF  A+PK +L  K + +    
Sbjct: 210 LLQFKILEKIV----------YPENNLLVVADDDQSIYSFRAADPKYLLNFKEVYKN--- 256

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  II L  + RS   I+++     +  +N    +                     
Sbjct: 257 -----AKIISLDTNHRSGKKIISLASSFITQNKNRYKKTYK------------------- 292

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                               +  FD   +        ++  Y I N+    T        
Sbjct: 293 -------------------VSRDFDDKIEIKEFKNFTKQYDYIIENLDNKKT-------- 325

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                   +L R       ++        D+ I+    D           D++++  F  
Sbjct: 326 -------GILFRNNISAISLSSYLLNKNIDFSINSYILD---FFKSKIFTDIVSIITFSE 375

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYI 488
             ++   F  +        S+DDI  +     +E    +       +       ++ K  
Sbjct: 376 DFDNVEIFSDIYYKISTYLSKDDIESLSHKAINENIFDFYENSDIEDYKKDALFNIEKKF 435

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             +  +         +  +           SR   E     D ++       +    S +
Sbjct: 436 KHIRKLKIEKKISFIYKSLSYDS--YINMKSRKYMEETVNKDIYIESLSYFSK----SCE 489

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            L    ++     K++ S     + + T+H++KGLE   VF++D     F          
Sbjct: 490 SLGELYDKINILEKKSKSLVKTNLSLSTIHSSKGLEYDKVFIIDLIKNEFPLIMD----- 544

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                       +       EE  R+ YVG+TRA D L I    
Sbjct: 545 ----------------------------EENYFERLEEERRIFYVGLTRARDDLHILTLK 576

Query: 669 NTSNEKKSNQRTWYDMV 685
           N +N+K    + +   +
Sbjct: 577 NRNNKKVYPSKFYTTSL 593


>gi|240142401|ref|YP_002966911.1| putative DNA helicase II [Methylobacterium extorquens AM1]
 gi|240012345|gb|ACS43570.1| putative DNA helicase II [Methylobacterium extorquens AM1]
          Length = 707

 Score =  170 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 107/718 (14%), Positives = 189/718 (26%), Gaps = 114/718 (15%)

Query: 1   LKNRFGLSLNESYELI-YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           ++ R G    ++   +       L    +            +       +A  L Q    
Sbjct: 74  IRERVGAVTGDAAAALRLGTFHSLGARILRRHASAAGFQDRSFVVLPQSEAAELLQRIVE 133

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
           +    R   L            + +       +  +    ++++     + +    T  M
Sbjct: 134 EQRLVRAVPLPDCDPALSDEDWERLSAAADGDRRRETAAFVREAARAIARWKSWGLTAPM 193

Query: 120 FKSTLASLT-----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                                 Y+ A +   + DF DL++    LL+       +     
Sbjct: 194 VADPSRGRRDQGQEAFAATYLAYQRALEARNMADFGDLVLKALVLLEDDP---RVSRAEA 250

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             + H+L+DE QD + +Q    R+L                +FAVGDE Q+I +F GA P
Sbjct: 251 GSVAHLLVDEAQDANAVQVRFARALAASAES----------VFAVGDENQNIMAFQGAYP 300

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +              G   ++  L  + R T +IL   ++V      ++  +  S   
Sbjct: 301 GAMQAIA----------GPGATLHVLTRNRRCTDEILRPANEVVRWNRGSRRGALVSGR- 349

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                                              +     +    S    A  IA    
Sbjct: 350 -----------------------------------SGPAPQVVAYDSEVAEAHGIAKAAK 374

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +I   T              I VLVR                   K+           D
Sbjct: 375 QLIADGT----------DPSKIAVLVRSAWVLKPYEEAF----LRAKVPFAVVGGRNALD 420

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQK- 472
               KD++A  R   S  DDL+F  +   P     +  +  +         T +E     
Sbjct: 421 REEAKDVVAFLRLATSPRDDLAFRRIANKPARGLGQAVVEAVVGHVSASGRTFHEACLAV 480

Query: 473 -----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--EV 525
                         + + + +  L   A    P     + +      +      G+  E 
Sbjct: 481 AEAGHLEPRACEGLEILAEGLRLLYARAAGTKPDGLVEIAVTRTGYEEHLDRSEGDRKER 540

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              +          E      L E +  L                 V+I T+H AKGLE 
Sbjct: 541 RATVAMLRRSARDAE-----DLTEFLETLALMSDLEFEGLREGA-RVKISTIHAAKGLEF 594

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VFL    S VF +       +     D    PI                        +
Sbjct: 595 DEVFLPCWESGVFPNPRAVDEGVRGRPGDPWNGPIGGG--------------------VD 634

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           E  RL +V +TRA   + +   +               ++ ++           L  +
Sbjct: 635 EERRLAHVALTRARHGVHVSYATARIGFGAFLGAGPSALLAEADLELTAAPNGDLRPA 692


>gi|32266430|ref|NP_860462.1| ATP-dependent DNA helicase [Helicobacter hepaticus ATCC 51449]
 gi|32262480|gb|AAP77528.1| ATP-dependent DNA helicase [Helicobacter hepaticus ATCC 51449]
          Length = 676

 Score =  170 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/607 (14%), Positives = 170/607 (28%), Gaps = 185/607 (30%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + + A +   K+++   D+ DL++   + LK       +          +L DE QDT
Sbjct: 167 IYEDVLAEFAALKRQHYYADYNDLLLLYKEALK---ARQSVL------FKEVLCDEYQDT 217

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q  ++ +L            +  +LF VGD  QSIY+F+GA+   +   +       
Sbjct: 218 NPLQDSILDAL------------NTPSLFCVGDYDQSIYAFNGADISIISGFREKY---- 261

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               +   +  L  ++RS+  IL + +KV    E       +                  
Sbjct: 262 ----KDARVFTLSKNYRSSKHILHLANKVIQNNERIYPKHLE------------------ 299

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                          P +  W              +  + IA  I++             
Sbjct: 300 -------VVKQGDFAPPKLVWY---------DELFLQYQGIAKHIAS------------- 330

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                +D  ++ R       I    R L     I           D   ++ L+ +   +
Sbjct: 331 SNCSYEDTAIIFRNNSSADGIEASLREL----NIPSKRKGSISFFDTKEVRLLLDICSLV 386

Query: 429 LSQEDDLSFVCMLKSPLFNFS--------------------------------------- 449
            +  D ++++  L S                                             
Sbjct: 387 HNPRDMMAYIHTL-SYGKGIGEVIAKDIYEALFTLGEGNCHKGMFEPNSAIKAYKQRNKN 445

Query: 450 -----EDDIFKICTQRHETETVYEYIQKFANCGISK--------FQHVIKYIHE------ 490
                 DD F + +Q    E +             K               +H       
Sbjct: 446 TQLGLFDDFFVLESQARFNEFISPQFASHLILQHPKLNKESAIFLSDFYDMLHSIYTLHS 505

Query: 491 ---LIHIAQFCSPHDFFTLILGAKKGRQQ---FISRFGNEVIDVLDEFLNFTLRNEQNSY 544
              LI              IL   + + +            ++ +   L+        +Y
Sbjct: 506 PKVLILRIMNAKFFQGIMHILAHTRAKNKDGSIDDTRLENALESIKRKLSLLYDL-SKNY 564

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             L + ++ +           +   + V +++VH AKGLE   V++VD     F ++   
Sbjct: 565 DDLSKFLNAMILGSSE-----ATEGSGVHLLSVHAAKGLEFQNVYVVDLMDGRFPNR--- 616

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                              K  + EE  RL YV +TRA + L++
Sbjct: 617 -------------------------------KLMSKGGSLEEERRLFYVAITRAKENLVL 645

Query: 665 CKHSNTS 671
                 +
Sbjct: 646 SFAKKDA 652


>gi|218666396|ref|YP_002425609.1| ATP-dependent DNA helicase, UvrD/REP family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518609|gb|ACK79195.1| ATP-dependent DNA helicase, UvrD/REP family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 745

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 99/630 (15%), Positives = 170/630 (26%), Gaps = 128/630 (20%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
           + A +     +  S             +    T +    +    + +          R  
Sbjct: 160 ELALKEMDWRKWLSAYDRL--------RSEGYTAQAQGAAQMTTDFINAW------WRVE 205

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
           F   +           A +    YE  K+   V+DF DLI    D L+    +     K+
Sbjct: 206 FTEAQKDPMAGDLYQFAVW----YETEKRLAHVIDFGDLINLPFDFLRANPPA---MAKL 258

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
               + I+IDE QD    Q++ I+ L                L  VGD+ QSIY F G+ 
Sbjct: 259 AHRYDQIIIDEAQDMDAAQYQGIQRLAR--------AMPTPNLMLVGDDDQSIYGFRGSS 310

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
           P  +     I +           I  L  ++RST +I+    +  +   +       S  
Sbjct: 311 PSVLQYFADIFR---------PEIYRLERNYRSTREIVQRASQHVAHNRHRIPKEPFS-- 359

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                                    + +      ++    D              + Y I
Sbjct: 360 -------------------------ERETEESIFAYRHETDMD------------VLYWI 382

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
           +  +                    VL R R+           L   Y+I  V        
Sbjct: 383 TRRLLQAHAD------GAPWSSFAVLYRSRR----FGPQISALLVRYRIPFVIYGGLSFF 432

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV---YEYI 470
           ++L +K   A  R   +  D  + +  L   L    +  +  +     E  T        
Sbjct: 433 EYLEVKFAGAYARLATNPRDSAA-LRDLAPLLPGVGDRYMDLLHAALMENPTFGFVQAAE 491

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
              +N   +  Q ++K    L H+ Q                  R         E  D  
Sbjct: 492 ACASNRFRTAHQSILKVQKTLRHLLQSNPETWGKTCWEYENSGIRVYLEKADAKEYADDK 551

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---------------SANHNEVRI 574
              +    R + N     Q +   + +      +                   + + V +
Sbjct: 552 SALIASLKRRQDNLGFFDQMITDVIHEADAEEAKHPVLLIAGMFVTDAQKKDEDGDRVVL 611

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            TVH  KGLE   V +      +          I     DD                   
Sbjct: 612 ATVHACKGLEFDEVHIPGFVQPLMPWPIDDDRDITTLPPDDQQRIY-------------- 657

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                  + +EE  R+ YV +TRA  +L +
Sbjct: 658 -------AQREEERRISYVALTRAKHRLFL 680


>gi|291296555|ref|YP_003507953.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
 gi|290471514|gb|ADD28933.1| UvrD/REP helicase [Meiothermus ruber DSM 1279]
          Length = 809

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 104/775 (13%), Positives = 219/775 (28%), Gaps = 125/775 (16%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           + + + + L   P+ Q   ++   +L          +    L +       +        
Sbjct: 62  AVDDLKRALARWPHTQAIQVSTLHALGYRIVRKAASEGLLKLAEVRDEGSEQALLQRTLR 121

Query: 72  FFLTQKFTPQKNIIT---QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
                K      +     ++        K  L+ +  +   +                L 
Sbjct: 122 RARELKLEWVSELENLEAEDFLSYVGACKGNLQYADLKGAGLPPAALRVASQAQAPEELE 181

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               L    E+ + +  +L F+D+++   ++L +      I   + +    +L+DE QD 
Sbjct: 182 WYLELYKLMEQVRLEEGLLTFDDMLMTGWEVLVRHPG---ILQTVQKAFQAVLVDEFQDV 238

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           +L Q E++  +T+            R   AVGD+ Q+IY + GA P+ +L   +      
Sbjct: 239 NLAQSEMLDLITQ----------PHRNYMAVGDDDQTIYEWRGASPRFILEFAQRYG--- 285

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                      +  +FR  A  + +  +V +  +  +             S   G  G V
Sbjct: 286 ------AKKYLIRDTFRCPAPQVVLAGRVIAHNQQREPKRL---------SLTKGFQGRV 330

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            L                            E      A+ +   I+ ++           
Sbjct: 331 HLRL--------------------------EPHTPAQAQGLVSDIAGLLAQGR------- 357

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              +  ++ VLVR    TP I         + +I               I+ L+A  +  
Sbjct: 358 ---KPGEMAVLVRLYAQTPYIEQCL----IERQIPYRVVGSTPFYQRPEIQGLLAYLQLA 410

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           L+      ++ +  +P    S      +  +     ++ E ++        +    ++ +
Sbjct: 411 LNPT-KHLWLQVYNTPKRYLSRALADAVWRRVERGASLVEALRAELAGAEERVARRLREL 469

Query: 489 HELIHI----AQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRN 539
            EL             H     +       +  +        G    + +  FL +T   
Sbjct: 470 AELFEWLGGAIAQGPAHAVLVALEARLDYCRHLLRSSGFYEVGVGRAEGVRAFLEYTRD- 528

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +     L + +  L Q     +         + +MT+  AKGLE P+VF+ D       
Sbjct: 529 -KGRVFELLQHLERLAQEHLGDE-PAPETRERLSLMTIFRAKGLEWPLVFIPDCNEGTLP 586

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                                            EE  RL YV +TR+S
Sbjct: 587 YSGS--------------------------------------ENLEEERRLFYVALTRSS 608

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
               +   S+        +  +  ++       E ++      S  +   +A        
Sbjct: 609 QHTYLYALSSLPLSPFLQEAEYQQVLGAVERVGEALEMKAEELSTAQTLALARGAHELGL 668

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
           E       +  +      K+ +      +    E   L P         ++E   
Sbjct: 669 ERFLHRWWKAEQAQPIAAKVLRLFAHAERAGWLEALGLTPEARGLWEAFDIEPGE 723


>gi|228949915|ref|ZP_04112110.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
            4AJ1]
 gi|228809766|gb|EEM56192.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
            4AJ1]
          Length = 1028

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 107/645 (16%), Positives = 193/645 (29%), Gaps = 75/645 (11%)

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
            L+  S  +   +    L++ F  +        +  +  + +  + +      ++    R 
Sbjct: 420  LKVRSFIKTKSDILEKLANEFFQKHPAKVLVDLNLKFYEVTK-MMKSFWDEMEKKGLTRQ 478

Query: 113  RFNTYK----MFKSTLASLTLAKYLNAH----YEEAKKKNCVLDFEDLIINTNDLLKKRD 164
               +      + +       L +Y+        E  KKK   +D  D++     L  + D
Sbjct: 479  EIESIDWGTVVKEEHQVLKDLFQYVFKRCEGLLEAQKKKENAIDTGDMVRK-LKLFTQGD 537

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                ++        ++ +DE QD+   Q E++ SL          +     LF VGD KQ
Sbjct: 538  TLKQLQND-----KYLFVDEFQDSDNTQIELVASL---------QNQLKYHLFVVGDIKQ 583

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            SIY F GA+            + A      F+ + L  ++R+T+ +L  +DKVFS     
Sbjct: 584  SIYRFRGAD-------YTSFTRLAERVNSSFTPVALNQNYRTTSSLLEKLDKVFS----- 631

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                                 G       +    + +    Q S  +  + L    +   
Sbjct: 632  --------------VWGQKCWGPTGNESLLPYTENDRLKGMQISEPTIEEFLYPNINKKN 677

Query: 345  LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            +  +    I   +       + + +      I ++VR  K         R       I  
Sbjct: 678  IEEKTVRHIFESVDITKQLPDDENKR-----IALVVRTNKQA----LEVREWCEKAGIGT 728

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--FSEDDIFKICTQRHE 462
            V N         A+     +   +L   +    V  L+SP F        +  +     +
Sbjct: 729  VQNIDGTFYKSDAVIHFKMMLDALLYPGEAKHVVNFLQSPYFRYAIPTKLLVPLKGDSEK 788

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                 +                +  I  +  I          +     K G    I    
Sbjct: 789  IIKFLQLHMGNDFTQYLDELKRLPVIAVIQKIISEKGLLQNISSYYEVKYGDDPDIDESI 848

Query: 523  NE---------VIDVLDEFLNFTLRNEQNSYSSLQELISELEQY----PPTIKRAHSANH 569
             +             L   +N   +   +   +L  +   L           +       
Sbjct: 849  KQLEIEIAVKQYEKNLYHLMNIIQKQFDSMSGTLWNIHEWLTLQIRVNRNENEPMIETKL 908

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              V I TVH +KGLE   V +       FS+K            D+    +       +N
Sbjct: 909  GVVEITTVHRSKGLEYHTVIMPKLNHS-FSNKQASFYIQDEKEMDNHRRIVGWKVKDFKN 967

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            N   DL  +     + E  RLLYV MTRA  +LI+      S + 
Sbjct: 968  NQFVDLQNYESFEVEREETRLLYVAMTRAKKRLILMMPEKISEKT 1012


>gi|282898629|ref|ZP_06306617.1| UvrD/REP helicase [Cylindrospermopsis raciborskii CS-505]
 gi|281196497|gb|EFA71406.1| UvrD/REP helicase [Cylindrospermopsis raciborskii CS-505]
          Length = 778

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/653 (13%), Positives = 187/653 (28%), Gaps = 73/653 (11%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK-EKLKKSQDEFIKIRDRFNTYKMF 120
               + LL       + T +    +    +  PDL    + +++   I     +   +  
Sbjct: 157 PTMYYRLLEGHQFDGEETEKMRRQSVLRTEILPDLAYTTIHEAKSSGIVPETLYQWSEKT 216

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +++   L +A  L   YE+  K   ++D++D+I+   ++ K              +I  +
Sbjct: 217 QNSYQILRIAAGLYEEYEKLMKSQGLIDYDDMILAALEVFKNPGA----LQIEKNKIFAV 272

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLR 239
             DE QD+S +Q +++  L E     +    +   L  VGD  Q+I S F  A+P     
Sbjct: 273 FEDEAQDSSQLQTKLLEILAEKKDRNE--DKTTLNLVRVGDSNQAINSTFTPADPIYFRE 330

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +           +  +  +  + RS+  I+   +       +          + +   
Sbjct: 331 FCQQ-------CAGEQRLATMNQAGRSSRIIIDAANFFLEWVNHQWSKKNLQNHSPKKPP 383

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
               ++  V + +      +     +     +  D              I   I  +   
Sbjct: 384 FLNQKIQVVNIGDPQT-DANPAPVGKGLELHTPDD-------IHHTVELIGQKIVEL--- 432

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                             +LVR+ +    +      + N + I +           +  +
Sbjct: 433 ---------FKTNVGTAAILVRENRQGKWLAENIEPICNQHHIELYEVAETERRSQVPKE 483

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCG 477
            L      +L   D       LK+ L    +  +              E+     F    
Sbjct: 484 IL-----ALLQFCDRPHSQDFLKTALTVLMQRQLIAAQDVNSLAILPEEFLYPTPFTKVQ 538

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
               +   +    L+  A     +     +  +    Q  ++       D L E +N  +
Sbjct: 539 TQVVKEAAQQCRNLLQGAWEIPVYQIIYFLASSLNYDQGELAT-----ADKLAEKVNLQI 593

Query: 538 RNEQNSYSSLQEL-----ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +++  S +  L       + E               ++ I+T+H AKGL+   VFL  
Sbjct: 594 TGDRSRSSLIHALVEIVNSEKFEAVDTENHEDKYIKKGQLTIITMHKAKGLDWDYVFLPF 653

Query: 593 TGSQVFS--------HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN-------------I 631
               +           + +    +           +        N+              
Sbjct: 654 LHENLIPGKLWVKPQSQFLGDFSLAEVARAQIRTALHQGTETMNNSQQNVNHNSNKSLFE 713

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
           +    +  K     E  RLLYV MTRA   L +                   +
Sbjct: 714 LKQAWEEAKDLKLAEEYRLLYVAMTRAKKLLWMSAAKRAPFTWTKPHSLQDLL 766


>gi|33861659|ref|NP_893220.1| UvrD/REP helicase subunit B [Prochlorococcus marinus subsp. pastoris
            str. CCMP1986]
 gi|33640027|emb|CAE19562.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus subsp.
            pastoris str. CCMP1986]
          Length = 1209

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 122/848 (14%), Positives = 251/848 (29%), Gaps = 158/848 (18%)

Query: 140  AKKKNCVLDFEDLIINTND--LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             K+   + +F DLI  T +   L     +     +I      +L+DE QDT  IQW +I+
Sbjct: 365  LKRSLSIFNFNDLI-KTVEKKYLGSDLTNDKSLSEIQNRFKCVLVDEFQDTDNIQWSIIK 423

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        +++   L  VGD KQ+IY F G + +  L  K               +
Sbjct: 424  KFF---------YTNNHFLLCVGDPKQAIYKFRGGDIETYLEAKSD----------AIEV 464

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
              L  +FRS+  +L V++ ++        L  ++  +  ++S                  
Sbjct: 465  FSLTNNFRSSNKLLDVINNLYKNGLRESKLEYNNLNSKLNKSFNH--------------- 509

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                    +  + + F+ +   S            I +++    +        I    I 
Sbjct: 510  --------KFDFKNVFEIVEFSSKEVD--------IEDLVTKYIVSFLLNNNEIDINKIS 553

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            +L              +       I     ++  + D  A   L+     IL      + 
Sbjct: 554  ILTLYNSQC----LELKNKLIKLNIPCQIKNKKNIFDTEASTLLVLFIESILYPRRYRNI 609

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
              +  S        ++      +       + I          F  ++  +      +  
Sbjct: 610  SLLATSKFIEMDMAELIDHQISKKIEILTNQCISWSLELKEKGFLTLVNELIINYKSSSI 669

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                D ++ +    +  +  +          L++   +           L +L + L   
Sbjct: 670  IFDADLYSNLFQLSEIIEIELMNNDF----NLNKVFKW----------YLNQLDNSLRSC 715

Query: 558  PPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                      N  N + + T+H +KGLE  +V      +        K    +   N D 
Sbjct: 716  TGEDYFTKDYNLQNGINLSTIHNSKGLEYEIVLCPYLSTISNKSNKTKG--PIWKSNLDR 773

Query: 617  GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK- 675
             I I I  + S+   V D     ++    E  RL+YV +TR+  +LII    N +N    
Sbjct: 774  SIYINISNNYSK---VEDFKLIEERDLFNESERLIYVALTRSKYKLIIFNDINNTNNIIN 830

Query: 676  -------SNQRTWYDMVYD--SFHNDERVKKIKLTNSINKDEWIAYEWSTHHP-ENTPLE 725
                    N       +    +  N   +        +  + W   + +T  P  +  + 
Sbjct: 831  NDLLPNLENINFHKSKIEHKIAAINIREISNKFNFIGLKNNLWKINKVNTKKPIPSEEVI 890

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST---IDTKGKTN-----LESLLSDN 777
               +    + ++K      +  K+  +   ILN S    ++              L    
Sbjct: 891  SFSSYSSWISKEKKTDYASNQYKDYEDNISILNNSQDTNLEKSKNCPKYLTLSNPLSDFP 950

Query: 778  QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
            +    G  +HK+++      ++  K         N     +    N+   I R++   + 
Sbjct: 951  KGTIAGTCLHKIIERFDFQNDNTDKLLDLINEELNFFQIDSSLALNVREGILRIINVSLG 1010

Query: 838  TTAM--------SCDSYSEVSVSGKINCPKKDI--------------------------- 862
               +        S +   EV  +  ++   K+I                           
Sbjct: 1011 RKLLNKKLIDIPSNNILKEVKYNLTLSYNGKNINSYDISKCFLLDQEFEFGKSYSNKIND 1070

Query: 863  --IIS-----GRIDQIS-----ISQQNIFIFEYKTHHHVPQE---------------IEH 895
              I++     G ID +      +     ++ ++K++     E                E 
Sbjct: 1071 LQILNKGFHSGCIDCVVPIGNKLEDSKWWVIDWKSNFISGSENSDCLPGNYNYENMKEEM 1130

Query: 896  IPYTHIAQ 903
            I + +  Q
Sbjct: 1131 IKHHYPLQ 1138


>gi|315924960|ref|ZP_07921177.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621859|gb|EFV01823.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 752

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/643 (14%), Positives = 174/643 (27%), Gaps = 114/643 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           ++I+   P   +  +      +      +   + +    ++     + A YE  KK+  V
Sbjct: 161 KQIHGTFPTDADMAEIESALTLARNQMLDEEAVAELMPEAVRF-PQILARYEATKKRKRV 219

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF+D++     L+KK      +R    +   +I +DE QDTS +Q+ ++R LT      
Sbjct: 220 MDFDDILRYAYGLMKKYPD---LRADFARRYPYINLDEAQDTSPLQFAILRLLTG----- 271

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                     F VGDE QSIY F GA P  +L  K    +          ++ +  ++RS
Sbjct: 272 -----RGGHFFVVGDEDQSIYGFRGASPAMLLHFKAHYPR--------AKVLLMETNYRS 318

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           TA ++   D+              +                 + +  +++   S+     
Sbjct: 319 TAQLVAASDRFIVFNRGRTPKHMITQNPPGVPPVHQRVASAEESYRFLLAAIRSEGKETA 378

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
             + +   +LP                         +   + R +               
Sbjct: 379 ILYRNNESALPLVDLFE--------------REGVRYRLKEHRPL--------------- 409

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                                       H  + D+           D   F  +      
Sbjct: 410 -------------------------FFSHFTVLDIRDFFALAKDPTDRGIFARIYYKMDC 444

Query: 447 NFSEDDIFKICTQRHETETV--YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
             S   +                  +         K     K    L  +A    P    
Sbjct: 445 GLSRQQMAAAMQAPAGQSVFDVLLALPGLPEWQTDKIAAEAKGFARLKTMA----PGPGI 500

Query: 505 TLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
            LIL           R       + + + L            +  + ++ L++    +  
Sbjct: 501 RLILDGLGYEAHLQFRIERGYREESIRQKLKIIRIL-AGRAQTQTQFLNRLDELAQIVSS 559

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                   V + T+H +KGLE   V+++D     F  +   +                  
Sbjct: 560 QAPGPAAGVTLSTIHASKGLEFDKVYVIDAVEGEFPSRAALEDSP--------------- 604

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                            ++   E  RL YVG TRA  +L     S       S     Y 
Sbjct: 605 ---------------EGRALFAEEVRLFYVGATRARRELEFVSVSGPDAPAVSRFVRRYM 649

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
              +      + ++ K+   +  D                  R
Sbjct: 650 GEEEKSAAQPKKRRRKILGELGADYLAQMRREKQRKRGASRSR 692


>gi|257066982|ref|YP_003153238.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
 gi|256798862|gb|ACV29517.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
          Length = 851

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 111/837 (13%), Positives = 245/837 (29%), Gaps = 197/837 (23%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            LA  +   YE+      +++F+ ++    DLLK   +      KI +EI+ ++IDE QD
Sbjct: 172 KLAYEIFTTYEKLLDSLGLINFQLILKRFLDLLKDPIIGE----KIREEIDLVVIDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+LIQ E+  +LT               +   GD+ Q++YSF GA+ + +          
Sbjct: 228 TNLIQEEIAINLT-----------KNGNIIVFGDDDQALYSFRGADARNLTHFDEKF--- 273

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
               G + S   L +++RS   I+          + +      S                
Sbjct: 274 YQRTGIRASKYFLNINYRSNQVIIDKARAFMDEAKGSSKKDLKS---------------- 317

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                     +   +  +  + AR      ++ +    +     
Sbjct: 318 --------------------------NKAEENPNTIVRAR------ADEMDNIVMIVKLL 345

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            + I+   I  L     ++     + +    +  I V+            I+ ++ +   
Sbjct: 346 SKKIKLGQIAFLFPSFNNS--YPSILQKKFENAGIKVINRKSDGYFRREEIRLIIFVLLK 403

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
           I       +    + +          +    +      + E  +        K ++ I+ 
Sbjct: 404 I-------ARTGPINTDFRG--GKMTYGQRQKLDYRNFLKEIYEDDKFKENRKLRNFIE- 453

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSY 544
                  ++  S  D    ++G +  +     +  ++       + +F+N  +  ++   
Sbjct: 454 -----DFSESYSISDLIYKLMGLETFKDILKDKNQDKKDLIFKNISKFINLAVDYDEIFE 508

Query: 545 SS--------LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            +           +    ++             + +  MT+H +KGLE   VF+   G  
Sbjct: 509 ETNSYYQKFIFSYIFIYFKKNAIGEFDEDDVYDDSINFMTIHQSKGLEFEAVFVSSLGD- 567

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                                     P+          + K   +  + ++ R  Y   T
Sbjct: 568 -------------------------YPRRDYDKFTDRFVEKDSLEKKELDFYRKYYTAFT 602

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA + L++               +    + +  +  +   K+   +   +          
Sbjct: 603 RAKNLLVLL------------DNSTDRRIKNFAYTLDSSSKLSSIDFKME---------- 640

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                   ER++  K L     I   +  P               +  K    L      
Sbjct: 641 --------ERKDDKKILAFTTDIDVYMTCP---------------LKYKFVRKLSFRTKK 677

Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
            ++   G  +H L Q I        K  +TS+  +N               ++ LL    
Sbjct: 678 TESLIFGSKVHNLAQYI--YSPSFDKKDMTSFLWENKGYIEP---------VSNLLNRGF 726

Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                  +  ++              I+ G ID I        I + KT     + +   
Sbjct: 727 NVKLSEANYKADRDF----------YILQGNIDLILEDSS---IMDLKTGSFDEKSLA-- 771

Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIPQNKLN-KAFAEISTKI 951
              +  QL  Y ++L      K +    L ++ +  +  +     +  A  +++ +I
Sbjct: 772 --KYKKQLLTYRQLL--LANGKEVGKIYLYFIEKDDLIEVKDEGFDMAAIDDVAREI 824


>gi|291277042|ref|YP_003516814.1| putative ATP-dependent DNA helicase [Helicobacter mustelae 12198]
 gi|290964236|emb|CBG40085.1| putative ATP-dependent DNA helicase [Helicobacter mustelae 12198]
          Length = 674

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 93/742 (12%), Positives = 196/742 (26%), Gaps = 193/742 (26%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTI-LKKAQTLQQASQTQCIEERFSLLSSFFL 74
               + P     ++  NK     +          KA+ +Q  +             +  L
Sbjct: 43  FDNQILPESILLLTFTNKAAEEMIARVAKKFGQTKARAIQSGTFHAIAYRYLKEKRNITL 102

Query: 75  TQKFTPQ---KNIITQ----EINKKSPDLKEKLKKSQDE-FIKIRDRFNTYKMFKSTLAS 126
            Q    +   K+I  +         +P   + L           +D      + +   A 
Sbjct: 103 KQPRELKILFKSIAEKRVYPSFEGTTPYSAQYLYDLYSLFLNTSKDLDFPSWLREKNPAQ 162

Query: 127 LTLA---KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
              A   + +   ++  KK     D+ DL++   + ++K  +              +L D
Sbjct: 163 EQFALIYEGIFEEFDALKKTFHYADYNDLLLLYREEIQKNPIP----------YAEVLCD 212

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ +Q  ++ +L            +P++LF VGD  QSIY+F+GA+   +    R 
Sbjct: 213 EYQDTNPLQDSLLDAL------------NPQSLFCVGDYDQSIYAFNGADISIIANFTRK 260

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        +  L  ++RS++ IL + ++V            +   +      R+ 
Sbjct: 261 YP--------DAQVFTLSKNYRSSSLILDLANRVIQKNPRIYPKRLEVIKSGDFPPPRLL 312

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
               + L                                          I+  I +    
Sbjct: 313 VYEELFLQ--------------------------------------YQEIARRIASGNP- 333

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      ++ ++ R            R L     +           D   +  ++ 
Sbjct: 334 --------NFDEVAIIFRNNASADGCEASLREL----GVPTKRKGSTSFFDTKEVALMLD 381

Query: 424 LGRFILSQEDDLSFVCML--------------KSPLFNFSEDDIF--------------- 454
           L   + + +D ++F+  L                   N  + D+                
Sbjct: 382 LCALLYNPKDMMAFIHTLSYGPQIGSSVAKDIYEAFINLGDGDVALGILSPNAKKPYQTR 441

Query: 455 -------------KICTQRHETETVYEYIQKFANCGISKFQH----VIKYIHELIHIAQF 497
                         +         +             KF       ++   +L      
Sbjct: 442 AKNAQLGLFDDLFLLENAARFDGYLAPTFCSHPILSHPKFTRDSALFLQDFCQLFTNLHK 501

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----------EFLNFTL-----RNEQN 542
                     +   +   +       E     D                      +N   
Sbjct: 502 EKNPHILIDAIAKNRFYGRITEMLARERAKNKDGSIDPTRKSDALEKIARKVLLLQNLAK 561

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            Y SL + ++ +        +      + V ++++H +KGLE   V+++D     F +  
Sbjct: 562 HYDSLGKFLNAMILGASEAVQ-----GSGVNLLSIHASKGLEYEEVYVIDLMEGRFPNT- 615

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                K  + EE  RL YV +TRA  +L
Sbjct: 616 ---------------------------------KLIQKGGSLEEERRLFYVAVTRAKTRL 642

Query: 663 IICKHSNTSNEKKSNQRTWYDM 684
            +    +   +    Q + + +
Sbjct: 643 YLSYAKSDPMKNLQYQPSVFLL 664


>gi|108798374|ref|YP_638571.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119867471|ref|YP_937423.1| UvrD/REP helicase [Mycobacterium sp. KMS]
 gi|108768793|gb|ABG07515.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119693560|gb|ABL90633.1| UvrD/REP helicase [Mycobacterium sp. KMS]
          Length = 1051

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 93/957 (9%), Positives = 236/957 (24%), Gaps = 175/957 (18%)

Query: 32  NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91
           N      + T         + L  A   +  +       +         +  + T     
Sbjct: 112 NGDAPPRLITSAEQDGIIRELL--AGDLEDGDRSAVAWPAAL-------RPALTTAGFAT 162

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE- 150
           +  DL  +  +   + + ++      +  +        A      YE+       +    
Sbjct: 163 ELRDLMARCTERGVDPVALQRLGRLSRRPE-----WAAAGRFAQAYEQIMLLRSAVGMAA 217

Query: 151 -----------DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
                      +L+    +      + A +       I  +L+D+ Q        ++R L
Sbjct: 218 PQATTPALGAAELVGAALEAFA---MDADLLAAERNRIGLLLVDDAQHLDPQAARLVRVL 274

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                               GD  QS++ + GA+P  +               ++ S I 
Sbjct: 275 AA----------GADLTVFAGDPDQSVFGYRGADPALL-------------RTEEGSAIV 311

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  S R    +   +  +       +                           + V   D
Sbjct: 312 LTRSHRCAPAVARAMSGIARRLPGPR--------------------------PEFVGNED 345

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
            + +       +              A   +  I++ +    +        +   ++ V+
Sbjct: 346 GRGDGSVAVRVAAT------------AHAESALIADALRRAHLVD-----GVPWSEMAVI 388

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           VR     P              + V       L +  A + L+ +               
Sbjct: 389 VRS---LPRAGAPLARALTAAGVPVDLPAAAPLVEEPAARALLTVLEATADGLTGAQAEA 445

Query: 440 MLKSPLFNFSEDDIFKICTQRHETE-----------------TVYEYIQKFANCGISKFQ 482
           +L  P+       + ++       +                          +       +
Sbjct: 446 LLSGPVGRVDPVTMRQVRRALRRADGSQPPREFTDLLVDALTGPLPAASDVSAELQRPLR 505

Query: 483 HVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFIS------RFGNEVIDVLD---EF 532
            V   +            P             ++++++        G +    LD     
Sbjct: 506 RVRSVLAAARRSVDDGLDPRHTLWQAWHRSGLQRRWLAASERGGAAGAQADRDLDAVTAL 565

Query: 533 LNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFL 590
            +   +   + + +S++ L+  +        R     +   V +++ H A   E  +V +
Sbjct: 566 FDVADQYVTRTAGASVRGLLDHVAALGLPPGRRGERRDPEAVAVLSAHAALAGEWDLVVV 625

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 ++ +   +   +      D    +            +      +     E  RL
Sbjct: 626 AGLQEGLWPNTIPRGGVLGTQRLVDVLDGVTD---------SASDAVSTRAPLLAEERRL 676

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS---INKD 707
           L   + RA  ++++    + S  +      +   +     +        +          
Sbjct: 677 LIAALGRARRRVLVTAVDSDSGAEAMLPSPFCQELTALATDPGDGPPAPVRAPRVLAPSA 736

Query: 708 EWIAYEWSTHHPENTPLEREE---------------TIKQLMDEQKIPKKLF-SPIKNDI 751
                      P+    +                            +       P+ ND 
Sbjct: 737 LVGRLRAVVCAPDGAVDDAARECAAAQLARLAAAGVPGADPGQWHAMTALSTDEPLWNDE 796

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTF-------NRGLIIHKLLQVIFTLPEHKRKNF 804
            +   L+PST+       L  LL  +            G ++H L+            + 
Sbjct: 797 QQVVTLSPSTLQALTDCPLRWLLERHGGRDGRDVRSAVGSLLHALVSEPGRTESQLLNDL 856

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI-------NC 857
              +     +     + +  L     +L       A +    +EV     +       + 
Sbjct: 857 ERVWADLPYEAQWHADNE--LTRHQAMLSAFEQWRAQTRRELTEVGTEIDVDGVVCDADD 914

Query: 858 PKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            +  + + GR+D++       + + + KT      + +       AQL++Y+  +  
Sbjct: 915 GRPAVRVRGRLDRLERDSAGRLVVVDIKTGKSPVTKDDAQR---HAQLAMYQLAVAA 968


>gi|154147886|ref|YP_001406551.1| UvrD/REP helicase [Campylobacter hominis ATCC BAA-381]
 gi|153803895|gb|ABS50902.1| UvrD/REP helicase [Campylobacter hominis ATCC BAA-381]
          Length = 674

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 103/627 (16%), Positives = 187/627 (29%), Gaps = 182/627 (29%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN-DLLKKRDVSAWIRYKIDQEIN 178
           ++   A   +   +   +E  K K    DF DL+I    +L+K   V+           +
Sbjct: 158 YEEQAAFSDIYADILEEFEAQKAKFGYADFNDLLIRMRKELIKGAPVA----------FD 207

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            IL+DE QDT+ +Q  +I S             + ++LF VGD  QSIY+F+GA    + 
Sbjct: 208 EILVDEYQDTNTLQGSLIDSF------------NTKSLFCVGDFDQSIYAFNGANINIIG 255

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                         +   +  L +++RS++ IL + ++V S  E                
Sbjct: 256 SFGMRY--------KDAKVYNLNINYRSSSQILALANRVISNNERLYPK----------- 296

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                        + +V +  +  NP+   +                 + +A  I  ++ 
Sbjct: 297 -------------KLIVGREGNFKNPKLYIY----------DEIMSQYKSVAQMIHKLLQ 333

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            DT   N          I V+ R       I    R L+    I           D   +
Sbjct: 334 NDTKGEN----------IAVIFRNNSSADGIEIALRELE----IQSKRKGSISFFDSKEV 379

Query: 419 KDLMALGRFILSQEDDLSFVCML-----------------------KSPLFNFSEDDIFK 455
           K    L   +++Q+D +SF+ +                         S +  F   D+  
Sbjct: 380 KAATNLLAILVNQKDIMSFINLCEYGATIGAAMSRELFEIFTNIGHNSIVNGFLCPDMNV 439

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHV-------------IKYIHELIHIAQFCSPHD 502
               +                  S+F  +              + + EL         + 
Sbjct: 440 QILPKKRKNVQLGLFDDEFFGSASRFGDLGFYNEFAKNPVFKFERLTEL-GAKFLYKIYK 498

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS------------------- 543
           F   +       +   +   +E+   + +FL      ++N                    
Sbjct: 499 FLKSVRNFDDTDEILKNIQNSEIFAHIADFLATKRATQRNGKLDEIRKKDEITKIYNKLE 558

Query: 544 --------YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                   Y + +   + L      I          V +++VH +KGLE   VF+VD   
Sbjct: 559 ILNEIALKYPNAERFYNFLTIGSKEI-----DEGEGVNLLSVHASKGLEFDAVFVVDLAQ 613

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             F +                                      L     EE  RL YV +
Sbjct: 614 NRFPNT----------------------------------KLMLTGGNIEEERRLFYVAV 639

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWY 682
           TRA ++L +         K + + + +
Sbjct: 640 TRARNELTLSFAKFDKIRKITYEASVF 666


>gi|315445541|ref|YP_004078420.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
 gi|315263844|gb|ADU00586.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
          Length = 1038

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 99/973 (10%), Positives = 260/973 (26%), Gaps = 168/973 (17%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK--IR 111
           +  +  +       LL+        +P +          +     +L+       +  I 
Sbjct: 112 RLITSAEQDGIIRELLAGDVEDGPASPVRWPEQLRPALSTVGFATELRDLMARCSERGID 171

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE------------DLIINTNDL 159
                     +       A      YE+       +               +L+    + 
Sbjct: 172 PVALQRIGRHAGRPEWQAAGRFAQAYEQIMLLRSAVGMAAPQATVPALGAAELVGAALEA 231

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
                + A +       +  +L+D+ Q        ++  L                    
Sbjct: 232 FA---MDADLLSAERSRVQLLLVDDAQHLDPQAARLVEVLAA----------GAELTVIA 278

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+++ + GA+P  +                    + L  S R              
Sbjct: 279 GDPHQTVFGYRGADPALLR--------------GDGPALILNRSHRCA------------ 312

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                                        +      +  +     +Q +      + P  
Sbjct: 313 ------------------APLADAIAAITRRLPGADASREFTGRGEQGTLAVRIAASPHA 354

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            SA          I++ +    +        +    + V+VR     P            
Sbjct: 355 ESAL---------IADALRRAHLVD-----GVPWDRMAVIVRS---VPRTGASLGRALAA 397

Query: 400 YKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
             + V        L +  A++ L+ +      + D    + ++  P+       + ++  
Sbjct: 398 AGVPVEDPHPDVPLANQPAVQALLTVLEATAEKLDGERALALVTGPIGRVDPVSLRQLRR 457

Query: 459 ---------QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFF 504
                     R   E + E + +       +    ++ +  ++  A+        P    
Sbjct: 458 TLRRGVTAPDRGFGELLVEALGRDVAALPDEHARALRRLRAVLTAARRSAEQGGDPRQTL 517

Query: 505 TLILGAKKGRQQFISRF------GNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISEL 554
                    ++++++          +    LD      +   +  E+ + +SL+ LI  +
Sbjct: 518 WQAWNRSGLQKRWLAAAERGGPAAAQAERDLDAVTALFDVAEQYVERTAGASLRGLIDHI 577

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   R  + + + + +++ H A   E   V L      ++ +   +   +      
Sbjct: 578 TGLSLPPARDDARSGDAISLISAHAALSGEWDFVVLAGLQEGLWPNVSPRGGVLATQHLV 637

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           D    +  P                +     E  RLL   M RA  ++++    + S ++
Sbjct: 638 DVIDGVAAPGH----------RLSSRAPLLAEERRLLIAAMGRARSRVLVTAVDSDSGDE 687

Query: 675 KS-NQRTWYDMVYDSFHNDERVK-KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
            +      +++   +          I+    ++    +    S     +  +  +E +  
Sbjct: 688 AALPSPFCHELAAMATEPVPEPALPIRAPRVLSPAAVVGRLRSVVCAGSDEVSEDERVCA 747

Query: 733 LMDEQKI---------PKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLS 775
                ++         P   +   +   +EP          L+PST+       L  LL 
Sbjct: 748 AAQLARLATAGVHGADPSSWYGARELSSDEPLWDGDDHVVTLSPSTLQMLADCPLRWLLE 807

Query: 776 DNQTFN-------RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
            +            G ++H L+    T            +           + + +    
Sbjct: 808 RHGGARGRDVRSTLGSLVHALVSESGTAESVLLDELDKVWGKLPFDAQWHSDNERIRH-- 865

Query: 829 TRLLENPMMTTAMSCDSYSEVSVS-------GKINCPKKDIIISGRIDQISIS-QQNIFI 880
             +L   +   + +    +EV             +     + + GR+D++    +  + +
Sbjct: 866 LEMLATFLKWRSDTRGELTEVGTEIDVDGVVAGGDGDGPGVRVRGRLDRLERDSEGRLVV 925

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD---SYPNKSLVCLLIY---VSEPKVFI 934
            + KT      + +       AQL++Y+  +     +  ++     L+Y    +  +   
Sbjct: 926 VDVKTGKSPVSKDDAQA---HAQLAMYQLAVAAGLIADGDEPGGGRLVYLGKTTGGRATE 982

Query: 935 IPQNKLNKAFAEI 947
             Q+ +     E+
Sbjct: 983 RHQDAVTPEVREL 995


>gi|213162023|ref|ZP_03347733.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 670

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 142/397 (35%), Gaps = 43/397 (10%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
           A    +   + ++           V          +    P    W    +S       S
Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344 ILARRIAYTISNMIGTDTIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            +A+  A  I + +                R ++A DI VLVR R++  LI      L  
Sbjct: 517 YMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL-- 574

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
               SV  ++R  + + L  ++++ + + +++ E + +    L + +   +  DI  +  
Sbjct: 575 -AIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL-- 631

Query: 459 QRHETETVYEYIQKFANCGISKF--QHVIKYIHELIH 493
             +  E  ++ + +  +     +  + V+  +  L+ 
Sbjct: 632 --NNDENAWDAVVEEFDGYRQIWHKRGVMPMLRALMS 666


>gi|255322232|ref|ZP_05363378.1| acyl carrier protein [Campylobacter showae RM3277]
 gi|255300605|gb|EET79876.1| acyl carrier protein [Campylobacter showae RM3277]
          Length = 677

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 107/726 (14%), Positives = 209/726 (28%), Gaps = 194/726 (26%)

Query: 32  NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS-FFLTQKFTPQKNIITQEIN 90
                +          K    +   +           L     L Q    +  + +    
Sbjct: 60  KAAAEMIERLNRHFDKKITSRITAGTFHSVSYSLLKFLEKPVTLKQPSELKTLLKSLVER 119

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-----------TLAKYLNAHYEE 139
           +K   L +               F    + ++    L            + + +   +EE
Sbjct: 120 RKFNHLSDVKPYGGAYLYDAYSLFQNLALKQTFGEWLKERSDEQGVYAEIYEDVLREFEE 179

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K K    DF DL+I   + L+K             +   IL+DE QDT+ +Q  +I + 
Sbjct: 180 EKSKFGYADFNDLLIKMRNELRKGAPL---------KFEEILVDEYQDTNSLQGSLISAF 230

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                         ++LF VGD  QSIY+F+GA  K +   K               I  
Sbjct: 231 ------------ETKSLFCVGDFDQSIYAFNGANIKIIGSFKDRF--------ADAKIYA 270

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L +++RS++ IL + +KV +                                + VV +  
Sbjct: 271 LNINYRSSSAILALANKVIANNPRLYEK------------------------KLVVGREG 306

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
              +P+   +   FD              IA  I+                 + ++I ++
Sbjct: 307 KFTSPKLLVYNELFDQYSN----------IAQVIA-------------VSKYKKENIAII 343

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R       +    R L     I           +   ++  M L   +++ +D ++F+ 
Sbjct: 344 FRNNSSADGLEVALREL----GIGSKRKGGVSFFESREVRAAMDLLGILINPKDIMAFIH 399

Query: 440 ML------------------------------------------KSPLFNFSEDDIFKIC 457
           +                                           K+  +     D     
Sbjct: 400 VCEYAKGVGAALSKEIFEVLSKVGHGDVVRGFLQPDDSVEAFAKKTKNYQLGLFDELDEV 459

Query: 458 TQRHE------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGA 510
            ++        +E  + +               +  I+  ++ A+  S P      +  +
Sbjct: 460 GEKSRFAKFNFSEKFFAHPILKMQKLSESGGQFLYEIYNFLNAAKRHSRPTSLIEDLKNS 519

Query: 511 KKG---RQQFISRFGNEVIDVLDE------FLNFTLRNE-----QNSYSSLQELISELEQ 556
           K          ++   +    +DE            + E       +YS  ++  + +  
Sbjct: 520 KIYALIADNLATKRATQKNGNVDETLKKEALERIAGKLEVLGELAKNYSEAEKFYNFITL 579

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               +     ++   V +++VH +KGLE  +VF+VD     F +                
Sbjct: 580 GSSEM-----SSGEGVNLLSVHASKGLEFDLVFVVDLAQNRFPN---------------- 618

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                             L       + EE  RL YV +TRA D+LI+        +K +
Sbjct: 619 ------------------LKLMSMGGSLEEERRLFYVAVTRARDELILSYAKYDKIKKIN 660

Query: 677 NQRTWY 682
            Q + +
Sbjct: 661 YQPSQF 666


>gi|304440181|ref|ZP_07400071.1| ATP-dependent nuclease subunit A [Peptoniphilus duerdenii ATCC
            BAA-1640]
 gi|304371230|gb|EFM24846.1| ATP-dependent nuclease subunit A [Peptoniphilus duerdenii ATCC
            BAA-1640]
          Length = 1076

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 144/948 (15%), Positives = 285/948 (30%), Gaps = 156/948 (16%)

Query: 29   SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF----SLLSSFFLTQKFTPQKNI 84
            S +++   L + T     ++    ++     +           +        +    K  
Sbjct: 206  SRLDRINDLDVATLRKAAIEPLSKIKDVLGLKDKNSILKTANDIYKLVIENPESPFIKTR 265

Query: 85   ITQEI----NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
              ++I     +K+ DL  +     D    I D +           SL   K     Y + 
Sbjct: 266  FPKDISDKEKEKAKDLIPETSDIGDRLKNITDLWKNVVYRTHIRVSLAFVK-----YIDE 320

Query: 141  K-KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K ++N V+  +DL+  + D+L    +    R    +   +I +DE QDT L+Q ++I SL
Sbjct: 321  KNRENSVVSNDDLLRYSLDIL----MIKENREYFQKIYRYIFVDESQDTDLVQIKIILSL 376

Query: 200  TEDFFVGKNTHSS-----PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
                 + KNT  S     P  +F VGD KQSIY F GA+       K + +         
Sbjct: 377  ISSGDINKNTPISEYKMLPNRIFMVGDRKQSIYRFRGADLNTYEIVKNLFEN-----TDN 431

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQVGTVQLW- 311
               + L  SFR    + + ++K F      N           +    +       +    
Sbjct: 432  AEFVNLKKSFRFQKHLASDIEKCFENTMVSNYGEYDIGVGHILVDEKNSSDSGIYITKLN 491

Query: 312  --------------EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM- 356
                          + + S  ++  + +     +       E     L       I  + 
Sbjct: 492  TDNFQDVVNSYKKADIIKSLVETDKDKENFILNTLISKEKVEIELESLEDSKKSKIKFLK 551

Query: 357  -------IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                   +    +  +  K  I+ KDIL+L    +    +T + R    D  + V     
Sbjct: 552  GNSDTLYLKAKFLVIDLLKSGIEPKDILILTMGNEGARAVTNILR----DDGLKVDSTSE 607

Query: 410  FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
                 + ++K      RF  +      F  ++K  + N     I K     +        
Sbjct: 608  ENYFSYESVKRSYIAIRFFENPIPSNYFEFLIK--ILNKDPVKIKKESEVINNLGFEEYL 665

Query: 470  IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
              K       +F+ + KY+       +      ++  I       +     F +   +VL
Sbjct: 666  KNKPEILNEEEFEFISKYLVLFKENRESALMSLYYEDIFFDGNYTENEYEVFYSFFREVL 725

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            D  LN                   +++      +   ++   +++M +H AKGLE   V 
Sbjct: 726  DSGLNL----------------GNIKEKNEVTFKPGISS--AIKVMNIHKAKGLEGKHVI 767

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            L++  S   +              +         ++   ++   +  +       +EY R
Sbjct: 768  LIEERSLRINSDDYFDRISNKGYLE---FRTGYSRNIILDHGNEEAREKSILENFKEYIR 824

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            L YV +TRA                                        +    I+ + +
Sbjct: 825  LFYVAITRAK---------------------------------------EEVYLISNEGF 845

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
               + S    +        ++    + +     +  P  ++           + T  + +
Sbjct: 846  YEKQLSFSKTKEIFNSSYNSVDSSKEYKSFKDSIICPNLSEK----------LKTNEEIS 895

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL--LLS 827
            L    +       G+I HK+++    + +   +  I          +   E  N+  + S
Sbjct: 896  LAFTDNIYHGTYYGIIFHKVMEKSIEIIKKDGEVDIEKILKVAIMDFINGEDVNIENITS 955

Query: 828  ITRLLEN--------PMMT-----------TAMSCDSYS--EVSVSGKINCPKKDIIISG 866
            I  +  +          +              +     S  E          K   I SG
Sbjct: 956  ILEIKNDINIERVIFEKLKSQVKRNATNNLDILKDKVKSSKETYTELPFTYLKDGHIHSG 1015

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            R+D I +    I I++YKT      +I      ++ QL  Y     + 
Sbjct: 1016 RMDLILLFDDFIEIYDYKTD----IDISDNSKKYMMQLESYRDAASEI 1059


>gi|257458469|ref|ZP_05623609.1| ATP-dependent DNA helicase PcrA [Treponema vincentii ATCC 35580]
 gi|257444170|gb|EEV19273.1| ATP-dependent DNA helicase PcrA [Treponema vincentii ATCC 35580]
          Length = 809

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 133/452 (29%), Gaps = 80/452 (17%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI-----EERFSLLSS 71
            + + P     V+  NK      E       + A+++ +   +           ++ LS 
Sbjct: 50  EQGVRPESILAVTFTNKAAREMAERARVLDERTARSVIRTFHSFGAWMLRRYAEWAGLSP 109

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK--IRDRFNTYKMFKSTLASLTL 129
            F          ++ + + + +    +   +         +        M +        
Sbjct: 110 NFTIYDDEDSVTLLMKALPQLNKQEAQGFMRKISRAKDYCLLPDSPQLVMIEPAPEF--- 166

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y++  ++    DF DLI+    LL++      I  ++      IL+DE QD++
Sbjct: 167 -ATIYRTYQQRLRETGNADFGDLIMLPVRLLQEHSA---IARQLHNRFKVILVDEYQDSN 222

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ ++R LT +             +  VGD+ QSIY F GAE + +L   R       
Sbjct: 223 DAQFRLLRELTGEDTY----------VCVVGDDDQSIYRFRGAEVQNILTFDRQFPH--- 269

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  II L  ++RS   IL V   + S  E   G +  +                  
Sbjct: 270 -----TKIIRLVRNYRSYEPILRVAGSIVSRNEGRLGKTLIAER---------------- 308

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                          +   +           S    A      +   +            
Sbjct: 309 ----------GTSGQKPHLYYLP--------SQDAEAELCVQLVKKAVRAGG-------- 342

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D  +L R    +          K    I           +   IKD +AL   I 
Sbjct: 343 --SYSDWAILYRTNAQSLSFETAFLHEK----IPHKVVGTLKFYEREEIKDALALLALIA 396

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           +  D+++F  M+  P     E    K+     
Sbjct: 397 NGRDEIAFRRMVNKPARGIGETTQNKLVAYAR 428



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 39/195 (20%)

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
            G +    L E  N       +  + L   +  +E           A  + V+++T+H  
Sbjct: 602 MGTQKTANLQELANTASLYPCS-AAGLTSFLEHIEL--DRSLAETDAGADAVQLITIHNT 658

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE   V +    + +F                                          
Sbjct: 659 KGLEFRNVIITGLENGIFPRNDTIG----------------------------------- 683

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
               EE  RL+YV  TRA D L +   +      K +       + +   +   V    +
Sbjct: 684 -EDMEEERRLMYVACTRAKDALYMTSCAARRMYGKLSFMEPSRFLAEIDGDLVDVAGQPV 742

Query: 701 TNSINKDEWIAYEWS 715
              I+  +  A  W 
Sbjct: 743 AGFISPADEEAALWK 757


>gi|298530797|ref|ZP_07018199.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510171|gb|EFI34075.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 713

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 85/507 (16%), Positives = 151/507 (29%), Gaps = 116/507 (22%)

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            LL        +   +     ++++DE QDT+L+Q  + R +  D             + 
Sbjct: 202 RLLTDNPE---VLEYVRSVYGYVMVDEYQDTNLVQARLARLIASD----------QGNIM 248

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD+ QSIY F GA+   +L                  +I+L  ++RST  +L++ + +
Sbjct: 249 VVGDDAQSIYGFRGADVGNILDFPGTFP--------GARVIKLEQNYRSTQPVLSLTNCI 300

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            S        +  ST T   R                                     L 
Sbjct: 301 LSSMGQKYEKNLFSTRTDGARP-----------------------------------ELI 325

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
             SS    A  +   +  +                  DI VL R       +        
Sbjct: 326 TPSSDMAQAGAVLSRVEEL-----------SSRYPLHDIAVLFRAAYHAYPLEVEL---- 370

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
           N   I          ++   IKD+++L R +    + L++   L   L         ++ 
Sbjct: 371 NKASIGYQKFGGMKFSEAAHIKDVLSLMRMVQDPPEILAWKRGL-GLLKGVGPKTAQRLY 429

Query: 458 TQ-RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG-AKKGRQ 515
                   +      K       +F  +++ +          SP  F T +L   +   +
Sbjct: 430 QAYCTSLTSGDGSELKKFETKNEQFAGLMELLR--RQKNLPASPSSFLTEVLDFYRPFLE 487

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           +         +  L++    T          L+  ++++            A  + + + 
Sbjct: 488 EKHMEDLPRRLSGLEQLEQITSAYNH-----LEAFLADMVLENSDPVG-MQAREDALVLS 541

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE   V L+D   + F  +                                  
Sbjct: 542 TIHSAKGLEWSAVLLIDLVEERFPSR---------------------------------- 567

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQL 662
                    +E  RLLYV  TRA D L
Sbjct: 568 RAMQDPDDMDEEQRLLYVACTRARDYL 594


>gi|213423867|ref|ZP_03356847.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 429

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 70/520 (13%), Positives = 155/520 (29%), Gaps = 106/520 (20%)

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIYS+ GA P+ ++   +              +I+L  ++RS+  IL   + + +   + 
Sbjct: 1   SIYSWRGARPQNLVLLSQDFPA--------LQVIKLEQNYRSSGRILKAANILIANNPHV 52

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                 S                                   E        +   ++   
Sbjct: 53  FEKRLFS-----------------------------------ELGYGAELKVLSANNEEH 77

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A R+         T  + ++      Q KD  +L R    + +            +I  
Sbjct: 78  EAERV---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPY 124

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHET 463
             +          IKDL+A  R + + +DD +F+ ++ +P        + K+        
Sbjct: 125 KISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATLQKLGEWAMTRN 184

Query: 464 ETVYEYIQK---------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
           ++++                   +++F H +  I  L       +  D    I       
Sbjct: 185 KSLFTASFDMGLSQKLTGRGYDSLTRFTHWLGEIQRLAEREPVAAVRDLIHGIDYESWLY 244

Query: 515 QQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANH 569
           +   S    E  +  +++  ++        E +   +L ++++         +       
Sbjct: 245 ETSPSPKAAEMRMKNVNQLFSWMTEMLEGNELDEPMTLTQVVTRFTLRDMMERGESEEEL 304

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V++MT+H +KGLE   V++V        H+                            
Sbjct: 305 DQVQLMTLHASKGLEFLYVYMVGMEEGFLPHQSSID------------------------ 340

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      +   EE  RL YVG+TRA  +L            +  +      + +  
Sbjct: 341 -----------EDNIEEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELP 389

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
            +D   ++ +   S  +          +       +R ++
Sbjct: 390 QDDLIWEQERKVVSAEERMQKGQSHLANLKAMMAAKRAKS 429


>gi|298492614|ref|YP_003722791.1| UvrD/REP helicase ['Nostoc azollae' 0708]
 gi|298234532|gb|ADI65668.1| UvrD/REP helicase ['Nostoc azollae' 0708]
          Length = 785

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 103/635 (16%), Positives = 188/635 (29%), Gaps = 63/635 (9%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
               ++Q   T+  E    LL       + T +    +    +  PDL   +        
Sbjct: 164 IRAAVEQWI-TKNPELYRRLLEGQKFDGEETEKLRRQSVLRTEVLPDLAYTVIHEAKSSG 222

Query: 109 KIRDRFNTYKMF-KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            + ++   +    + T   L +A  L   Y++       +D++D+++    +L+      
Sbjct: 223 ILPEKLYKWSERTQDTYQILQVAAGLYEQYQKLMASQDFIDYDDMMLAALRVLENSSA-- 280

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
             R     +I  I  DE QD+S +Q +++  L  +   G N   S   L  VGD  Q+I 
Sbjct: 281 --RRIEQNQIFAIFEDEAQDSSPLQTQLLEILAGE-EDGNNADQSTLNLVRVGDPNQAIN 337

Query: 228 S-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI-PENAQ 285
           S F  A+P       +       N      +  +  + RS+  I+   +           
Sbjct: 338 STFTPADPIYFREFCK-------NCDINQRLATMNQAGRSSKIIIDAANFALEWVNSQWS 390

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            ++++  T    +      +G  QL                       + L Q+      
Sbjct: 391 TITKNGQTPFLSQKIAAVNMGEPQLNANPAPFGKGLELYSPRDIHHTVELLSQKVIELFT 450

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
                                           VLVR+ +    +T     +  +++I + 
Sbjct: 451 QN------------------------SDSRAAVLVRENRQGRWLTSALEAICQEHQIKLY 486

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--FSEDDIFKICTQRHET 463
                    H+  +++++L +F             L+  +        DI  + +   + 
Sbjct: 487 DVGEMERRSHVP-QEILSLLQFCDRPHSSDYLKATLQVLVQRQLIPIQDINSLASIPEQ- 544

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
              + Y    A       +        L+H       +     +       Q  ++    
Sbjct: 545 ---FLYPGPLATPQTEIVRKAAHLCRSLLHARLELPIYQIIPFLALTLNYDQAELAT--- 598

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQEL-----ISELEQYPPTIKRAHSANHNEVRIMTVH 578
              D L E +N       +  S L  L         E               ++ I T+H
Sbjct: 599 --ADKLAERVNLQNWGNNSMGSMLSALSEIVNSERFEPVDTENSEEQYTKKGQLTITTMH 656

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKM------HIMPSLNDDPGIPIWIPQSKSRNNIV 632
            AKGL+   VFL      +   K               S      I   + Q       V
Sbjct: 657 KAKGLDWDYVFLPFLHENLIPGKFWVPPQSQFLGDFTLSEVARAQIRAGLHQQTETIPNV 716

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           S   +  K     E  RLLYV MTRA   L +   
Sbjct: 717 SQAWEQAKYLKMAEEYRLLYVAMTRAKRLLWMSAA 751


>gi|157163928|ref|YP_001466843.1| putative site-specific DNA methyltransferase [Campylobacter
           concisus 13826]
 gi|112801282|gb|EAT98626.1| UvrD/REP helicase [Campylobacter concisus 13826]
          Length = 677

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 99/588 (16%), Positives = 181/588 (30%), Gaps = 99/588 (16%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   +E  K K    DF DL+I   D LKK    A          + ILIDE QD
Sbjct: 168 EIYEDVLEEFEAEKAKFSYADFNDLLIKMRDELKKGANLA---------YDEILIDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA  + +   K      
Sbjct: 219 TNTLQGSLIDAF------------KTKSLFCVGDFDQSIYAFNGANIEIIGSFKDRFPN- 265

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   +I  L +++RS++ IL + +KV +            +     +  R   +  
Sbjct: 266 -------ANIYALNVNYRSSSSILALANKVINNNPRLYEKHLTVSREGNFKPPR--LLVY 316

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +L++Q  +  D                    S+  I        I +       F   +
Sbjct: 317 NELFDQYQNIADIISFSPFNRENIAIIFRNNSSADGIEVALKERGIGSKRKGGVSFFESR 376

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +       + + V  +     I              V       + D L       L + 
Sbjct: 377 EIKALIDIMGIYVNPKDIMAFIHICEYAKG------VGSAVSKEIFDALLKLGHGNLIKG 430

Query: 428 ILSQEDDLSF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH--- 483
           I+  ++ ++      ++      +D        R       +         + K      
Sbjct: 431 IVEPDESVNISSNKRRNYQLGLFDDLDEFAEVSRFSKLGFSDKFLGHPVLKLQKLSESGA 490

Query: 484 --VIKYIHELIHIAQFCSPHDFFTLILGAKKG----------RQQFIS-----RFGNEVI 526
             + +  + L  +     P      I  +K            R    +         EV 
Sbjct: 491 QFLYEIYNFLRGMRNISKPATMINEIKTSKIYSLIVENISTKRATLKNGNVDLALKEEVK 550

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           + +    +  L      Y  + +  + L      +     +    V +++VH +KGLE  
Sbjct: 551 ERIMA-KSVVLSELAKKYQDISKFYNFLALGSNEM-----SEGQGVSLLSVHASKGLEFD 604

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+VD     F +                                  L       + EE
Sbjct: 605 QVFIVDLAQNRFPN----------------------------------LKLMSMGGSLEE 630

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
             RL YV +TRA D+L +        +K + Q + + ++      +E 
Sbjct: 631 ERRLFYVAVTRAKDELYLSYAKYDKIKKVTYQPSRF-LIEAGMAKEEA 677


>gi|154500456|ref|ZP_02038494.1| hypothetical protein BACCAP_04128 [Bacteroides capillosus ATCC
           29799]
 gi|150270687|gb|EDM97983.1| hypothetical protein BACCAP_04128 [Bacteroides capillosus ATCC
           29799]
          Length = 702

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 82/542 (15%), Positives = 151/542 (27%), Gaps = 115/542 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                Y +A +   ++D++D ++    +L++      I   +     +  +DE QDTS I
Sbjct: 177 AFYQAYCKALRDRQLMDYDDQMVYALQILRQYP---QILGAVRDRYRYYCVDEAQDTSKI 233

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  +IR L                LF VGDE QSIY F  A P+ +    R+        
Sbjct: 234 QHTIIRLLAGQ----------SGNLFMVGDEDQSIYGFRAAYPQALTEFDRVYPH----- 278

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++ +  ++RST  I+   D+     +N              R++R       ++ 
Sbjct: 279 ---AKVLYMEQNYRSTEQIVAAADRFIQKNKNRHPKHM--------RATRGSGPELREI- 326

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                              S +D   Q      +A                         
Sbjct: 327 -------------------SVYDRQKQYRYLCKMAENCETE------------------- 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV-GNDRFILTDHLAIKDLMALGRFILS 430
                 VL R              L     I         +   +  ++D+  + R   +
Sbjct: 349 ----TAVLYRDNDSALP----LMDLLERSGIPYRCRQVESVFFTNRVVRDITDIIRLAQA 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             +   F+ +        S     +   Q              ++      +   + +  
Sbjct: 401 PGNAEYFLNIYYKLGAGISRTLAQEAAAQAGRAGETILEYIASSSSASPWTRKQCRALQT 460

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQE 549
            ++             I+           R G+    ++L+               +   
Sbjct: 461 HMNNLLDEPADRAVYRIVHFMGYGAYLEDRGGDLNKAEILEAL--------GAEEPTPWR 512

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L+  LE+    ++           + T+H++KGLE   V L+D    +            
Sbjct: 513 LLERLEELREVVQAGAGTPDCPFVLSTIHSSKGLEYDRVILMDVADGMLPK--------- 563

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                +        +    EE  RL YVGMTRA  +L I     
Sbjct: 564 --------------------ALPQRDPSPQELDLYEEERRLFYVGMTRAKRELDIVTFRK 603

Query: 670 TS 671
             
Sbjct: 604 PG 605


>gi|218247595|ref|YP_002372966.1| UvrD/REP helicase [Cyanothece sp. PCC 8801]
 gi|257061072|ref|YP_003138960.1| UvrD/REP helicase [Cyanothece sp. PCC 8802]
 gi|218168073|gb|ACK66810.1| UvrD/REP helicase [Cyanothece sp. PCC 8801]
 gi|256591238|gb|ACV02125.1| UvrD/REP helicase [Cyanothece sp. PCC 8802]
          Length = 783

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 95/634 (14%), Positives = 194/634 (30%), Gaps = 61/634 (9%)

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           T        LL       + T +    +    +  P L   + +         ++     
Sbjct: 147 TANPMRYQVLLEGREFDGEETERLRRQSVLRTEVLPQLAHIIVREAKSSGLSPEQVGELS 206

Query: 119 MFKSTLA-SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +       L +   L   YE+  +    +D++D+I+    +L+K      IR    Q++
Sbjct: 207 EYSKDYYQILAIGSGLYKAYEQVMRSQDFIDYDDMILGALRVLEKD----AIRQIWQQQV 262

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKR 236
             +  DE QD+S +Q  +I  L +D     N  ++P  L  VGD  Q+I S F  A+P  
Sbjct: 263 FAVFEDEAQDSSPLQERLINLLAQDP----NLSNNPPNLIRVGDPNQAINSTFTPADPVY 318

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA----QGLSEDST 292
                            +  +  +  + RS+  I+   + V +   N         E+  
Sbjct: 319 FNWFC-------ETCKSQDKLAIMDQAGRSSKIIIEAANFVLNWVNNQWKNDNSKKENDN 371

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             +   S    +  T    + +     +   P  ES     +    E     +   I   
Sbjct: 372 YFLDKSSLNTEKNDTPFRQQDIQLVPTNDPQPNPESVGQGVEIYTPEDIYQTV-ELIRKR 430

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           + N++  +                 +LVR+ +    +      L  +  I +        
Sbjct: 431 VVNLLKNNPDHRA-----------AILVRENRQGRFLAEQLAHLPKEEGIKLYEVGEVDR 479

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYEYI 470
              +  ++++ +  FI       S    L+        +  D+  + T        + Y 
Sbjct: 480 FSQIP-QEILRILEFIDRPHSPESLKAALEILEKRDLIAAQDLNALVTYPEN----FLYP 534

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI---LGAKKGRQQFISRFGNEVID 527
                          +Y   L+        +     +   L         + +  + +  
Sbjct: 535 TPLIEEPKKPVLQARRYCRNLLRAKLELPSYQLIPFLGMTLKYTGAELATVQKLSDRIEQ 594

Query: 528 VLDEFLNFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            +    +      + + S+L+E+++ E  +             N+V I+T+H AKGL+  
Sbjct: 595 QIKGKYSL-----KTTISTLKEIVNIEGFEGVDEDTEDRYTRPNQVTIITMHKAKGLDWD 649

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV------------SD 634
            VF+      V   +           +             + ++                
Sbjct: 650 YVFIPFLHQDVLPGQPWVPTSAKFLGDFALSEVARAQIRAAVHSQYINQGIISQIREPET 709

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             +   +  + E  RLLYV MTRA   L +    
Sbjct: 710 AWQEAGQLKKAEEYRLLYVAMTRAKRLLWMSAAQ 743


>gi|224372404|ref|YP_002606776.1| putative recombination protein RecB [Nautilia profundicola AmH]
 gi|223588940|gb|ACM92676.1| helicase [Nautilia profundicola AmH]
          Length = 878

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 93/586 (15%), Positives = 189/586 (32%), Gaps = 125/586 (21%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            ++       +E +    +  I +     T K      +  +L +         K K   
Sbjct: 240 AKVRGFKKCYEEWMDAEFERLISLIKELLTAKERYVLSSLFSLYEKYKQIKNSVKSKENY 299

Query: 147 LDFEDLIINTNDLLKKRDV-SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
           LDF+D+     +LL + ++   ++ +++D  I HILIDE QDTS+ QW++   L ++   
Sbjct: 300 LDFKDIEHKVYELLVEDELNRDFLYFRLDSRIEHILIDEFQDTSVTQWKIFEPLVDEIKA 359

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
           G+      ++ F VGD KQ+IY F G   +         +       +      LP ++R
Sbjct: 360 GEGVK-DFKSFFYVGDTKQAIYRFRGGSSELFDYVYEQLKPFGMVQKE------LPKNYR 412

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           S   I+  V+++F++ + A                   + G V++ E  + +        
Sbjct: 413 SKKVIVDYVNRLFNLNQEANV-----------------EGGYVEVKEGDLFEELENT--- 452

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                                                     ++ ++ KDI VLV    D
Sbjct: 453 -------------------------------------LKFMFEKGVRDKDIAVLVYTNDD 475

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              +    +   N     VV   R  + +    K L+ + ++     +        KS +
Sbjct: 476 ILKVADFIKEKFNK---DVVTATRAKVKNQPFAKALIDILKYTHDMLEGK------KSEI 526

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           +  +   +                            +   + I +L+          F  
Sbjct: 527 YKLNFLTVIGKPYTPE--------------PFYVPVKKPAEMIRDLM----------FEY 562

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            ++     +                  L  +L+        L +  + +++Y   +    
Sbjct: 563 DLIDESSLK-----------------LLEHSLKY-----KDLFDFAAGIDEYDEELPL-- 598

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               + + +MTVH +KGLE   V +         +     +       +   I   I   
Sbjct: 599 -GEFDGITVMTVHKSKGLEFENVIV--LEKTGRDNNRSSNLLFDYEGIELKDIKYNIAGR 655

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           +  +   + +    K+   ++   + YV  TRA + L I K   +S
Sbjct: 656 EILDMEFAKVKAKEKELEYKDKRNVEYVAFTRAVNSLFILKKEKSS 701



 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 32/160 (20%)

Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
           D      GL +H   ++              +   +       K+   +     +L++  
Sbjct: 751 DYGAIYFGLALHYAFEM----------EEFDAVLNRYGIYTDVKKAYGMYEKTKKLID-- 798

Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
                     Y E+                G ID +  S+  I I +YK+     +    
Sbjct: 799 -----FEGRKYKEIPFVYNGE--------EGIIDLLVESEDEIVIIDYKSAKPEDES--- 842

Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
              ++I Q+  Y+ + K+   NK +   L+YV E K+  +
Sbjct: 843 ---SYITQVEHYKTVAKEL-KNKKVKGYLLYVDEEKLREV 878


>gi|149194507|ref|ZP_01871603.1| ATP-DEPENDENT HELICASE [Caminibacter mediatlanticus TB-2]
 gi|149135251|gb|EDM23731.1| ATP-DEPENDENT HELICASE [Caminibacter mediatlanticus TB-2]
          Length = 673

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 102/683 (14%), Positives = 207/683 (30%), Gaps = 106/683 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
               + ++        +       ++ M+     ++  A+ ++  +      +    L+ 
Sbjct: 38  RIAHLLENGLKPEEILLLTFTNKAAIEMKERVSQVIPYAKNIEAGTFHSVSYKWLKKLNK 97

Query: 72  -FFLTQKFTPQ--------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TYKM 119
              L Q    +        K    + + ++ P     L      FI   +        K 
Sbjct: 98  NIVLKQPKDLKILFKSIYDKRDFNRVLGEEKPYSANYLFDLYSLFINSNEEDFISFLSKK 157

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
             S      + + +   YE  KK++ ++DF  L++   + L            ID     
Sbjct: 158 APSQEEYALIYEDIFDEYERVKKEHNLVDFNSLLLEMINALNS---------GIDNPFRE 208

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           IL+DE QDT+ +Q   I ++ +D            +LF VGD  QSIY+F+GA+   +  
Sbjct: 209 ILVDEYQDTNPLQNRFIEAVRKD------------SLFCVGDYDQSIYAFNGADINIIST 256

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-----STTT 294
             +              +  L  ++RS  +IL V ++V          S +     S   
Sbjct: 257 FDKRYPN--------AKVYTLKKNYRSYGEILDVANRVIKNNPRIYPKSLEVTRGFSGEY 308

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            +             +  ++++   ++ +                S+ +I A      I 
Sbjct: 309 PKLLMYSDTFEEYKDIASRILTSTTNKEDIAILF-------RNNSSADAIEAMLREKGIE 361

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                   F + ++  +    +  LV  +     I            I+    +   +  
Sbjct: 362 CRRKGGVSFFDSREIKVTLDLLTFLVNPKDIMAFIHIFEYAKGIGSAIASEIFEALTILG 421

Query: 415 HLAIKD--LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK-ICTQRHETETVYEYIQ 471
           +    D  L       +  +   S+   L            FK +  +    +       
Sbjct: 422 NGHAIDGFLNPDLSKKVFTKKKTSYQLGLFDDFSVLGSISKFKNLGFEEEFLQNPILKHP 481

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQFISRFGNEVIDVL 529
           K +  G     +    + +L       S  +    + +LG       +            
Sbjct: 482 KLSIEGAEFLYNFYLLLKKLKRFKNPQSIFNEVVNSKVLGHIISSLAYTRSKDKNGKVDE 541

Query: 530 DEFLNF---------TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
           ++F             L N   +Y+ L++ ++ +      +     +    V ++TVH +
Sbjct: 542 EKFEEAKVKIKNKITILGNLLKNYTDLEKFLNAMVLGASEM-----SEGRGVNLLTVHAS 596

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE   V++VD     F +                                  +     
Sbjct: 597 KGLEFKEVYIVDMMEGRFPN----------------------------------IKLSKP 622

Query: 641 KSTQEEYNRLLYVGMTRASDQLI 663
               EE  RL YV +TRA D+L 
Sbjct: 623 AGGIEEERRLFYVAVTRAKDKLY 645


>gi|23006886|ref|ZP_00048999.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 222

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/191 (38%), Positives = 111/191 (58%), Gaps = 1/191 (0%)

Query: 93  SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
           +P++K+ L   Q   I + D     +    T     LA  ++   E  K +   LDF+DL
Sbjct: 2   APEVKQALLDEQARLIPLFDALRAARALARTRGLFRLAAEIHRRVEAQKTRLGALDFDDL 61

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           I  T DLL +   ++W+ YK+D+ ++H+L+DE QDT+  QWE++R+LT +F  G+     
Sbjct: 62  IHKTLDLLSR-VGASWVLYKLDRGVDHVLVDEAQDTNPQQWEILRTLTAEFAAGEGARGL 120

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
            RT FAVGD KQSIYSF GA+P+     +R  ++ A  A   F+ + L LSFR+ + +L 
Sbjct: 121 TRTRFAVGDPKQSIYSFQGADPREFELTRRAWERAAKGADLDFADVSLRLSFRTASHVLA 180

Query: 273 VVDKVFSIPEN 283
            VD VF IPE+
Sbjct: 181 AVDAVFKIPEH 191


>gi|289640615|ref|ZP_06472787.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509504|gb|EFD30431.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 1229

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/582 (11%), Positives = 153/582 (26%), Gaps = 95/582 (16%)

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              D LS +  L   +      D+  +       + + +   + +  G ++ + +   +  
Sbjct: 672  PADPLSSLDPLDEAVTGIDPCDVVAL------ADVLDDPGDEVSPAGRARLRILAGELRH 725

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRF---GNEVIDVLDEFLNFTLRNEQ-NSYSS 546
            L          D    ++       +  +          D +  F++     E  ++  S
Sbjct: 726  LRAHVDE-PLLDVIHRVVEVTGLDVELAASPEAVTAHRRDNIAAFVDVVANFEGLDNDGS 784

Query: 547  LQELISELEQYPPTIKRAHS---ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS---- 599
            +   ++ L       +   +   +  + V++MTVH +KGLE  VV + +   +VF     
Sbjct: 785  VHSFLAFLRAAREHERGLDATSPSGADAVQLMTVHKSKGLEWEVVAVPNLSRKVFPVTTV 844

Query: 600  -HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              K      ++P+        +   +       ++D         + E  RL YV  TRA
Sbjct: 845  RSKWTTVASVLPTPLRGDADDLPALRGH-DKAALADFTAECDAYLEREERRLGYVAFTRA 903

Query: 659  SDQLIICKHSNTSNEKKSNQRT-------WYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
               L+   H   S++++    +        +                +   +        
Sbjct: 904  KSLLLGSGHWWGSSQRRPRGPSAFLDELHDHARAGGGRVALWAPPPSEGETNPQLAGMDD 963

Query: 712  YEWSTHHPENTPLEREETI-------KQLMDEQKIPKKLFS------------------- 745
             +W   +       R+            L   + +P                        
Sbjct: 964  LDWPLPYEPVAFARRQAVAREVSGYLAALTASRPLPDDDHERMTPAERQMLTELDADVEL 1023

Query: 746  -----------------PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
                             P     ++   L                        RG   H 
Sbjct: 1024 LLAEARRARRVVREVELPRALTASQVVRLRADPAGLARDLARPMPRQPVPQARRGTAFHS 1083

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
             ++ +F        + +     +      A +   L       L +P           S 
Sbjct: 1084 WVEGMFEQTPLIDLDDLPGAADEGVDDADAADAAVLRE---AFLASPYGQ-------RSP 1133

Query: 849  VSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
             +V            + GRID +  +      + ++KT                 QL++Y
Sbjct: 1134 FAVEAPFELLIGGRAVRGRIDAVYDLGDGRWEVVDWKTGRRQAD---------AVQLAVY 1184

Query: 908  EKILKDSYP--NKSLVCLLIYVSEPKVFI---IPQNKLNKAF 944
                         ++    +YV   +V     + + +L    
Sbjct: 1185 RLAWARLRGVALDAVDAAFLYVRSGEVVRPKLLSEPELEALL 1226



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 99/318 (31%), Gaps = 61/318 (19%)

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           A Y  AK++  V+DF DL+     L    D    +          +L+DE QDTS+ Q  
Sbjct: 343 AEYRAAKQELEVIDFGDLVTLAVRLA---DSVPEVGALERARARVVLLDEYQDTSVAQRR 399

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++  L                + AVGD  Q+IY + GA    +       ++     G+ 
Sbjct: 400 MLAGLFG----------GGHPVTAVGDPCQAIYGWRGASVANLDGFPAHFRR---CDGEP 446

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             + EL ++ RS   +L++ + V +       ++                   V L    
Sbjct: 447 ARVYELTVNQRSGGRLLSLANTVAATLRARHRVARLRPRPD----VAEHGTTVVALHPT- 501

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                       +   R +A T+  ++              +  
Sbjct: 502 ---------------------------WAGEVRWVAATLREIVDAGR---------ARPG 525

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           +  VLVR R D P +            + V       L     + D++A    +     +
Sbjct: 526 ECAVLVRARSDVPALYAA----LLAAGLPVEVVGLGGLLSLPEVADVIATLEVLDDPTAN 581

Query: 435 LSFVCMLKSPLFNFSEDD 452
            + V +L  P       D
Sbjct: 582 AALVRLLTGPRVRLGRRD 599


>gi|215425866|ref|ZP_03423785.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T92]
 gi|289749131|ref|ZP_06508509.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T92]
 gi|289689718|gb|EFD57147.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis T92]
          Length = 799

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 110/765 (14%), Positives = 206/765 (26%), Gaps = 79/765 (10%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
              E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 83  PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 142

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
            L             +       ++  D +    ++    + + D    +         +
Sbjct: 143 ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 202

Query: 124 LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 203 KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 260

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 261 VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 308

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                    AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 309 --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           +            +            +     ++L +     + A               
Sbjct: 361 LASAPRP--APFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 410

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 411 SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 466

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           + L     + +          +  F  + + +        +                   
Sbjct: 467 LCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTD------------------- 507

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
             V   + E    A+       F     A  GR+    R G   +  L            
Sbjct: 508 -RVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAH 566

Query: 542 NSYSSLQELISELEQYP------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                L  L   L +        P   R   ++   V+IMTV  AKGL+ P+V+L    +
Sbjct: 567 RERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN 626

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
           +      I        L  D G        K        +    +     +  RL YV +
Sbjct: 627 RNVRSDDIL-------LYHDDGTRCLYIGGKDGGAQRRTVEGLNRVEAAHDNLRLTYVAL 679

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA  Q++               R    ++        +V         ++  W  +   
Sbjct: 680 TRAQSQVVAWWAPTFDEVNGGLSR----LLRGRRPGQSQVPDRCTLRVTDEQAWAVFAQW 735

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                 +  E     +  +++                    +   
Sbjct: 736 EAAGGPSVEESVIGARSSLEKPVPVPGFEVRALFTAGIDTPVAAE 780


>gi|295394604|ref|ZP_06804823.1| excision endonuclease subunit UvrD [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972497|gb|EFG48353.1| excision endonuclease subunit UvrD [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 678

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 99/671 (14%), Positives = 196/671 (29%), Gaps = 172/671 (25%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-YLNAHYEEAKKKNCVLD 148
            +   D+  +L+ +    + I D     +  +      T A   +   Y E K  N ++D
Sbjct: 129 RETIRDISAELEYAAVNLVGIDDYPQFAQSRELPPGIDTTAMVAIMRAYAEYKTTNRLID 188

Query: 149 FED-LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           ++D L+I +  +     ++A I     Q+  H ++DE QD S IQ+E++++   +     
Sbjct: 189 YQDVLLILSGVMASTPHIAAQIH----QQYRHFVVDEFQDVSPIQYELLKNWLGERDS-- 242

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   L  VGD  Q+IY+F GA        +        N   +   I L  ++RST
Sbjct: 243 --------LCVVGDPAQTIYTFAGA--------RDSYLMNLGNVLPQARTISLVRNYRST 286

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I+   ++V +     + + +                               +      
Sbjct: 287 PPIVEAANRVLAHTGRNRMVLQP-----------------------------QRTGGVPP 317

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
           S+  Y D   +       A  +A  I+  I +           +   DI +L R    +P
Sbjct: 318 SFHEYPDDTSE-------ATGVAQRIAAQISSG----------VPVSDIAILFRTNGQSP 360

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
                       + I  +            ++   AL R  +SQ        ++   L  
Sbjct: 361 AFEHALDE----HGIHYLVRGGEQFFARPEVRQAGALLRANMSQGKTGKLDTVVSDLLTT 416

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
               ++                            +   + ++ L+++A            
Sbjct: 417 LGWQEV--------------------GPRVHGAVRARWESLNALVNLAADM--------- 447

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                                         + E      L E ++ELEQ           
Sbjct: 448 ------------------------------QQESQLPVPLSEFVAELEQRAEAQHAPSVQ 477

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               V + +VH AKGLE P V+LV     +    +                         
Sbjct: 478 G---VTLASVHAAKGLEWPHVYLVGMSEGLMPISYASTPL-------------------- 514

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVY 686
                             E  RL YV +TRA D L +    +  ++ + + + + +    
Sbjct: 515 ---------------EVAEERRLFYVAVTRAQDSLTVSWSQARQASSQSTRKPSRFISEM 559

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                 +R ++     S  +         +       +  E +     +     K+  + 
Sbjct: 560 RGHTPTQRERRGHTRRSSARTCGCGNPLVSSQERRDKVCHECSQAVDENLVNALKEWRTQ 619

Query: 747 IKNDINEPYIL 757
              +++ P  +
Sbjct: 620 TARELSVPAYM 630


>gi|300932820|ref|ZP_07148076.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens DSM
            45100]
          Length = 1224

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 115/830 (13%), Positives = 249/830 (30%), Gaps = 163/830 (19%)

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            +   Y E  +K  ++ F+  +    +L+ K      +  +  Q    +++DE QDT   Q
Sbjct: 258  IVREYRETLRKRDLMTFDQQMSIAAELVTKHP---RVGEEQRQRFRVVMLDEYQDTGQAQ 314

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
              ++RSL  +             + AVGD  QSIY F GA    + + +           
Sbjct: 315  RVLLRSLFGE------GKDPGLAVTAVGDPMQSIYMFRGATASNLEKFRADF-------- 360

Query: 253  QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 +EL  S+R+ + +L + + V                               +   
Sbjct: 361  APAEKLELTTSWRNPSLVLNLANVVSRWSM--------------------------EDRP 394

Query: 313  QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
             V + +  + + +     ++ D   +      LA  +A      + +D           +
Sbjct: 395  LVSALNPREGSEEGTVRVAFHD--DKNQEIQWLAEHVAEHWETWVKSDQE---------K 443

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                 VLVR+  D   I    + +     +    +    L +   +K + +  R ++   
Sbjct: 444  PFSAAVLVRRNADAVPIYEALKEM----GVPAEMSAGPGLLELPEVKQVFSTLRVLVDPS 499

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---------- 482
            DD + + ++ S  +     DI  +  +  +           +     + Q          
Sbjct: 500  DDEAVLSLVTSSRWALGAADIKALSDRAKQLHRAQLETGDTSAPADQRLQPLEDVFAKQP 559

Query: 483  ---------------------------------------HVIKYIHELIHIAQFC----- 498
                                                        + +L     F      
Sbjct: 560  GQNLRDELQGVMEDPVAGAVGLGDALADLGDATDFGMSAEGSARLEKLSAELGFLRRHSM 619

Query: 499  --SPHDFFTLILGAKKGRQQFISRFGNEVI-----DVLDEFLNFTLRNEQNSYSSLQELI 551
              S  D    I      R + I+R+ +E         LD F        + S +S   L+
Sbjct: 620  SKSLPDLVADIERMLGVRTEVITRWYSEPEHSIGTSHLDRFAEIVRSFSEISGASASTLV 679

Query: 552  SEL----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ----------- 596
              L    E+         +   N V+I+TVH +KGLE  +V +   G             
Sbjct: 680  EYLLAAKEKEDGLETGEVTQKENLVQILTVHKSKGLEWDLVAVPHAGRATYTDAEKPTTR 739

Query: 597  --VFSHKHIKKMHIMPSLNDDPGIPIWIP--------QSKSRNNIVSDLIKHLKKSTQEE 646
               ++    +    +    ++      +P        +    + IV +  +   +   +E
Sbjct: 740  GYKWTKNASRLPTHLRGDAEEYEGLDTMPVLDLAGVTKRSQHSKIVDNFSREYNRFEAKE 799

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             +R+ YV +TRA  +L++   +      +    +   ++  +   +   +K K TN +  
Sbjct: 800  DDRVFYVAITRAKKKLLVSGSAYREGRTELEDPSVGMVLLRNALYEAAGRKWKATNDVPA 859

Query: 707  DEWIAY--EWSTHHPENTPLEREETIKQLMDEQKIPKKL--------FSPIKNDINEPYI 756
             E +       T   +++  E  ++       ++    L              D  E   
Sbjct: 860  IETVPVWSPLGTLRKKDSDFEPADSSDPGPGGREHNLLLNDVLAFNEARQTFTDEMEKNP 919

Query: 757  LNPSTIDTKGKTNLESLLSDNQTFNRG-----LIIHKLLQVIFTLPEHKRKNFITSYCTK 811
             +    D+  +     L +       G       +H + +  FT    + +    +    
Sbjct: 920  ASGRDADSWPREQAPLLAARPGAAE-GAQLVRDALHGV-EESFTAQAAQNQEPAQATQNP 977

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS--EVSVSGKINCPK 859
             A   P      +  +    +E   +   +  +  +  EV +  ++   +
Sbjct: 978  VATTSPQAPRTAITTAENWDVETTHLLEELRAEETATIEVPLDVRLTATE 1027



 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 70/267 (26%), Gaps = 40/267 (14%)

Query: 688  SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
            +     +       N +      A   +    EN  +E    +++L  E+    ++   +
Sbjct: 962  AQAAQNQEPAQATQNPVATTSPQAPRTAITTAENWDVETTHLLEELRAEETATIEVPLDV 1021

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
            +    E   L     +   +      L       RG   H                   +
Sbjct: 1022 RLTATEAVGLRRDRDEFARRRRRPVPLEPKPFAKRGTAFH-------------------N 1062

Query: 808  YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC------DSYSEVSVSGKINCPKKD 861
            +  ++       + + L  +    L++P +             S +  S+ G  +     
Sbjct: 1063 WVEQHYGQVTLLDDEQLPGASDATLQDPALEHLKQRFLESEWASRAPASIEGAYSVALAG 1122

Query: 862  IIISGRIDQISISQQ----NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY-- 915
             +  GRID +            + ++KT         +       QL++Y          
Sbjct: 1123 HVFEGRIDAVFHFSDDPAKGWMVVDWKTGKKPAGAEMNAA---KMQLAVYRLAWAQVLSS 1179

Query: 916  ------PNKSLVCLLIYVSEPKVFIIP 936
                  P + +     YV   +     
Sbjct: 1180 QLGIAVPVEEVRAAFHYVYANETVEPD 1206


>gi|296270924|ref|YP_003653556.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296093711|gb|ADG89663.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 682

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 104/750 (13%), Positives = 206/750 (27%), Gaps = 186/750 (24%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQ--ASQTQCIEERFSLLSSFFLTQKFTPQKN 83
              +++   +      G       A  L+Q        I  R   +    L       + 
Sbjct: 62  RAAAELRHRLRALGAPGVQARTFHAAALRQLGYFWPMVIGGRMPQVIESKLPLLAEVSRG 121

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-TLAKYLNAHYEEAKK 142
           +       +  DL  +++ ++   +   D        + T          L A YEE ++
Sbjct: 122 VRGGVDRGELKDLAAEIEWAKVVQVGPEDYPAAAAKARRTPPLPPEEVARLYAAYEERRR 181

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  ++DFE ++  T  ++ +      +  +I  +  + ++DE QD + +Q  ++ +    
Sbjct: 182 ERHLIDFETILELTAAMIAEHPE---VAARIRGQYRYFVVDEYQDVNPLQKLLLDAWLG- 237

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        L  VGD  Q+IYSF GA P  +                  ++I L  
Sbjct: 238 ---------GRDDLCVVGDPNQTIYSFTGATPHYLTGFSAEFP--------SATVIRLVR 280

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RST  ++++ ++V +   +   L           S R      V              
Sbjct: 281 TYRSTPQVVSLANRVIAGSPHRMELV----------SQRPDGPEPV-------------- 316

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                          +    +  AR +A+TI  +I             + AK+I VL R 
Sbjct: 317 -------------FTEYDDETAEARGVAHTIKRLIERG----------VPAKEIAVLFRV 353

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +            +  +  V +      +   ++  M L R      +       + 
Sbjct: 354 NAQSEAYEQAL----GEAGVPYVLHGLERFFERPEVRQAMVLLRGAARAAEPEPLAPAVH 409

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           + L                                    +   + +  L  +A+  +   
Sbjct: 410 AILGGIG---------------------LTPEPPTGGTARERWESLKALAELAEDMAV-- 446

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
                                                     + L E ++ELE+      
Sbjct: 447 ----------------------------------------QGAGLPEFVAELERRAAEQH 466

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                    V + ++H AKGLE   VFLV     +                         
Sbjct: 467 APSVEG---VTLASLHAAKGLEWDAVFLVGLTEGMLP----------------------- 500

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                       ++        EE  RLLYVG+TRA + L +      S   + ++R   
Sbjct: 501 ------------IVHAETPEQIEEERRLLYVGITRAREHLHLSWALARSPGGRRSRRPSR 548

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            +              +   ++ ++    +                       EQK+ + 
Sbjct: 549 FL----------DGLTRSARAVREERPARFARGPRQAGPVLCRICGRTLVKAAEQKLGRC 598

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLES 772
           L  P   D      L         +  + +
Sbjct: 599 LTCPADYDEELLARLKAWRAKVAKEAKVPA 628


>gi|294506712|ref|YP_003570770.1| ATP-dependent DNA helicase PcrA [Salinibacter ruber M8]
 gi|294343040|emb|CBH23818.1| ATP-dependent DNA helicase PcrA [Salinibacter ruber M8]
          Length = 847

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 111/816 (13%), Positives = 249/816 (30%), Gaps = 124/816 (15%)

Query: 6   GLSLNESYELIYKDLWP---LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
           G++  +     +                +      ++ +     LK A+     S+    
Sbjct: 48  GVAPGDILASSFSRATAQDMEAGLTELGLPDVNCRTLHSLGRQFLKWAEAEHHWSRRLGD 107

Query: 63  EERFSLLSSFFLTQKFTPQ----KNIITQEINKKSPDLKEKLKKSQDEFI--KIRDRFNT 116
           E+         LT +   +    +++   E++    +L++++   + +     + +    
Sbjct: 108 EDLNPSRLGPVLTGRALTRLARERDVDDHELDIDRGELEDQVSAWKAQLCYPDLDEAALP 167

Query: 117 YKMFKSTLASLTLAKYL---NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
               +    +    +       +YEE +++   + F+D+++   + L + D    +R + 
Sbjct: 168 PAAREEARQAEHDNEDFVTLYQYYEEERRREGWVTFDDMLLEGWEALLRFDD---LRARA 224

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            Q   H+LIDE QD S +Q++++  LTE            R   AVGD+ Q IY + GA 
Sbjct: 225 QQTYEHVLIDEFQDISRVQYQMLDVLTE----------PHRNYMAVGDDDQCIYEWRGAN 274

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
           P  +L  +   +              +  +FRS A    + + V +  ++ +        
Sbjct: 275 PSFILDFREEYEAD---------EYLIRDTFRSQAPHTVLANAVIAHNDHRREK------ 319

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              H +   G  G+ Q+                               A   A  +A  I
Sbjct: 320 ---HLNLTRGFGGSTQVH--------------------------AADGADAEATHVAGAI 350

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            + + T               +++VLVR+   TP +  +      D  +           
Sbjct: 351 ESQLDTGRTLP----------EMVVLVRQYAQTPSLEQVF----IDRDLPYRIVGNVPFY 396

Query: 414 DHLAIKDLMALG---------RFILSQEDDLSFVC-------MLKSPLFNFSEDDIFKIC 457
               ++ L+            R     +   +          +++ P    S D I ++C
Sbjct: 397 RRRPVQVLLRHLFWGTLEATVRTAGWFDHRRNAQRYVDRFQKLMREPNRYVSTDLITRLC 456

Query: 458 TQRHETET-----VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI--LGA 510
            +    ET     +   +    +    + +  +    +L+      +      LI  L  
Sbjct: 457 REAVGDETSITDLLAASMGAMHDRTAERVERFLDTADQLVDRLDEPAHRTVDWLIKALDY 516

Query: 511 KKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
           +   +++ +     +  I      ++F        +  +  ++  +++     +    A 
Sbjct: 517 EDYLRRYSAFEELADRRIRTARSLIDFAR-----GHPDVPSVLRRIKEISVD-RPDRGAQ 570

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + + I ++H AKG E PVVF+                   P   D PG         + 
Sbjct: 571 ADVLEIRSIHRAKGREWPVVFVPGCNDGTIPTSRDDSAMPPPDEEDSPGASGDAAPENAD 630

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK---KSNQRTWYDMV 685
            +      +       EE  RL YV +TRA +QL +             +++      + 
Sbjct: 631 PDDAPAARR-------EEERRLFYVALTRAQEQLHLSYDRTEPPSPFLAEADAEHRLALC 683

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                   R         +      A          T  +  E  ++ +      ++   
Sbjct: 684 DRVRPVFHRPADDWAAADVAWLCIGAGALRLRRYLTTWWDPTEAQRRALAAHLGREEALR 743

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
              +     Y  +P   +         +   +    
Sbjct: 744 EAADAEIAAYARDPGAEEKGAHDASSPMEEGSDASE 779


>gi|72163277|ref|YP_290934.1| DNA and RNA helicase [Thermobifida fusca YX]
 gi|71917009|gb|AAZ56911.1| DNA and RNA helicase [Thermobifida fusca YX]
          Length = 1050

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 91/703 (12%), Positives = 184/703 (26%), Gaps = 188/703 (26%)

Query: 6    GLSLNESYEL------IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--------KKAQ 51
            GL  ++          +     P      +  ++   +  E G P           + A 
Sbjct: 486  GLDPDQRAAAEHTGGPLLIVAGPGTGKTRTLTHRIAYVVAERGVPASQCLAITFTRRAAD 545

Query: 52   TLQQASQTQCIEERFS-LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
             L++       E      +++         ++      ++       + L++     I  
Sbjct: 546  ELRERLHALLGERAADMTITTLHGLGALILREQYARAGLSPDFTIADDSLRQEIAAEIAG 605

Query: 111  RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
                    + +   A       + A ++   ++  ++DF DLI     LL   +    + 
Sbjct: 606  SAGEGRRLLARRETALHEDDAEI-ARFDARLREANLVDFTDLIRLPVRLLSADEE---LV 661

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                    +I +DE QD    Q+ ++R L                L  +GD  Q+IY F 
Sbjct: 662  AHYRSRWPYISVDEYQDVDESQYALLRLLAG----------PEANLTVIGDPDQAIYGFR 711

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+    LR                  ++L  ++RS + I+    +  +      G +  
Sbjct: 712  GADVGFFLRFTEDYP--------SARTVQLTRNYRSNSTIVNAALQAIAPASLVPGRTLR 763

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
            +                                       +    +   +     A  +A
Sbjct: 764  AVGQ---------------------------------FGEAPRIGVHVAADEYAEASFVA 790

Query: 351  YTISNMIGTDTIFSNGKKR-------VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              I  ++G  ++ S    R        +   DI VL R    +           N   I 
Sbjct: 791  RAIDRLLGGTSLHSLDSGRVTEDGDDSLSFSDICVLYRTDAQS----EAIISAFNTAGIP 846

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
                    L     ++ L+A                                        
Sbjct: 847  FQKRSHDRLLSRPEMRILVAEL-------------------------------------- 868

Query: 464  ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                    +     + + +  ++ +      A            +   +   + ++    
Sbjct: 869  ------PHQPDGPVVDRVRSAVETL--CRRYADN-------ERRVTDVRAAGELVAPLAE 913

Query: 524  EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
                 L EFL+               L +E++   P          + V ++T+H AKGL
Sbjct: 914  RCGTDLSEFLSAL------------ALGAEVDALDP--------RADRVSLLTLHAAKGL 953

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            E PVVFLV     +                                          +   
Sbjct: 954  EYPVVFLVGCEDGLLPFFFPG----------------------------------EEHED 979

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
              E  RL +VG+TRA  +L + +    +   ++        + 
Sbjct: 980  TAEERRLFFVGITRAQRRLYLSRARRRTRRGRTFDAAPSPFLA 1022


>gi|20091191|ref|NP_617266.1| ATP-dependent DNA helicase [Methanosarcina acetivorans C2A]
 gi|19916302|gb|AAM05746.1| ATP-dependent DNA helicase [Methanosarcina acetivorans C2A]
          Length = 612

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 131/439 (29%), Gaps = 80/439 (18%)

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             YEE KK    LD+ DL     D L     +      ++    HI++DE QDT+ +Q+E
Sbjct: 225 ETYEERKKTLNCLDYGDLNRIALDFLNTYGTAE-----LNDTYTHIIVDEFQDTNYVQFE 279

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +I+ LT             + +  V D  QSIY+F GA    +   K+       +    
Sbjct: 280 LIKHLTA----------GEQNITVVADANQSIYAFRGAYSNNIEEFKKQFGISEKD---- 325

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             ++ L  SFRST  IL V  ++ S        S                       E +
Sbjct: 326 --VLSLDTSFRSTNKILRVAHRLISHNYPEDRKS-----------------------ECL 360

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
           + ++      +        D   +       AR+IA  I + I             I  K
Sbjct: 361 LLKNCDANEGKNVVVQETKDEGEE-------ARKIAEQIESYIKKG----------IPLK 403

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED- 433
           +I VL R            R +    +I V+  D         IK +++    + +  D 
Sbjct: 404 EIAVLYRTHTQGR----QIRQVLQRREIPVLVKDDADYLKQPEIKTVLSYLYVLNNLNDP 459

Query: 434 ----DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK------FQH 483
                 ++  +          D +      +    +  E I    +            ++
Sbjct: 460 TPRGTEAWWRLFHYNNSLEDSDSVRIGEYVKKNKISFQEAIYHRLDKIGLSENGCITVKN 519

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVIDVLDEFLNFTLRNE 540
           V K I  L          +    I           +  +    E    L          E
Sbjct: 520 VKKTIMVLSEKKV-LDVSELLLEIYELSGIVRHLSRLDTMKTREAFLNLRNLHEMAKHFE 578

Query: 541 QNSYSSLQELISELEQYPP 559
           Q     L   I  LE    
Sbjct: 579 QFHNRELFGFIDYLEVLDE 597


>gi|317125674|ref|YP_004099786.1| ATP-dependent DNA helicase, Rep family [Intrasporangium calvum DSM
           43043]
 gi|315589762|gb|ADU49059.1| ATP-dependent DNA helicase, Rep family [Intrasporangium calvum DSM
           43043]
          Length = 713

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 105/657 (15%), Positives = 182/657 (27%), Gaps = 168/657 (25%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQAS--QTQCIEERFSLLSSFFLTQKFTPQK 82
                ++   +      G       A  L+Q      Q I      + S           
Sbjct: 68  ARAAGEMRTRLRALGVQGVQARTFHAAALRQLHYFWPQAIGGAAPEVMSVKAPAVAEAAS 127

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK--YLNAHYEEA 140
            +  Q       DL  +++ S+   +  +      +        L L     L   YE+ 
Sbjct: 128 RLRLQFDRTAIRDLASEIEWSKVNLLTPQSYSAAARAAHREPPGLDLTAMARLLEAYEDV 187

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           K    V+DFED+++ T  +L+ RD    I   +  +    ++DE QD + +Q  ++    
Sbjct: 188 KATRGVIDFEDVLLLTVGVLEDRDD---IARTVRGQYRQFVVDEYQDVNALQQRLLDLWL 244

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                          +  VGD  Q+IYSF GA P+ +LR                  + L
Sbjct: 245 G----------GRDDVTVVGDPAQTIYSFTGASPEHLLRFPSRFP--------GARTVRL 286

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RS+  I+ + + V +      G +   T ++   +        V L          
Sbjct: 287 VRNYRSSPQIIQLANAVIA-----SGPAGGRTASVALTAQGEPGPAPVLL---------- 331

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                            + S     A  +A  I+ +IG              A +I VL 
Sbjct: 332 -----------------EHSDDPAEAAAVAERIAKLIGGGHA----------AAEIAVLF 364

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +  I            +  +            ++D + L R     +D       
Sbjct: 365 RTNGQSQAIESAL----AGSGVPYLVRGGERFFARREVRDAILLLRGAARSDDGS----- 415

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
              PL + + D I                            +   + ++ L  +A     
Sbjct: 416 --KPLGHITRDVISGAGWAPE------------PPTSGGATRERWESLNALAGLADDL-- 459

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                                                       + L EL+SEL++    
Sbjct: 460 --------------------------------------AATAPDARLPELVSELDRRASE 481

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                      V + ++H AKGLE   VFLV     +                       
Sbjct: 482 QHAPAVQG---VTLASLHAAKGLEWDTVFLVGASDGLIP--------------------- 517

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                         +          E  RLLYVG+TRA  QL +   +  +   +  
Sbjct: 518 --------------ISLAEGADAVNEERRLLYVGVTRARRQLFLSWAAARNPGGRPT 560


>gi|302554000|ref|ZP_07306342.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
 gi|302471618|gb|EFL34711.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM
           40736]
          Length = 760

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 96/613 (15%), Positives = 175/613 (28%), Gaps = 160/613 (26%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              K  +           L A YE+ K++  V+DFED+++ T  +L+       I  ++ 
Sbjct: 200 AAVKAGREAPRDPAEIAQLYAAYEDVKRERSVIDFEDVLLLTVAVLQD---RHDIAEQVR 256

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +  H ++DE QD S +Q  ++     +             L  VGD  Q+IYSF GA P
Sbjct: 257 TQYQHFVVDEYQDVSPLQQRLLELWLGERDS----------LCVVGDASQTIYSFTGATP 306

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L  +              ++++L   +RST  ++ + + + S           +   
Sbjct: 307 DHLLDFRTR--------HPGATVVKLVRDYRSTPQVVHLANGLLSQARGR-----AADHR 353

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           +   S R      +                    +T Y D   +       A   A  I 
Sbjct: 354 LELVSQRAPGPEPL--------------------YTEYTDEPAE-------AEGAARRIR 386

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++ +           + A +I VL R    +            D  +           D
Sbjct: 387 ELVDSG----------VPAAEIAVLFRTNAQSETYEQAL----ADAGVPYQLRGAERFFD 432

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              ++      R       + S              DD+  + +Q     +  E      
Sbjct: 433 RPEVRKAGVALRGAARFGGNDSL------------LDDVVDLPSQVRAVLS-GEGWTPQP 479

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
             G    +   + +  L+++AQ                                      
Sbjct: 480 PAGSGAVRERWESLAALVNLAQDF------------------------------------ 503

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                     ++L +L++EL++               V + ++H+AKGLE  VVFLV   
Sbjct: 504 ----AAAKPGATLADLVAELDERAGAQHAPTVQG---VTLASLHSAKGLEWDVVFLVGVA 556

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +                                     +         EE  RLLYVG
Sbjct: 557 EGMMP-----------------------------------ITYAKTDEQIEEERRLLYVG 581

Query: 655 MTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           +TRA + L +      +           + D +                  I +      
Sbjct: 582 VTRAREHLHVSWALSRSPGGRPNRRPSRFLDGLRPGSTATTGRTSTAGAGGIERGITGTR 641

Query: 713 EWSTHHPENTPLE 725
             +    + TP  
Sbjct: 642 GSAPRRVQRTPAR 654


>gi|148259806|ref|YP_001233933.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
 gi|146401487|gb|ABQ30014.1| UvrD/REP helicase [Acidiphilium cryptum JF-5]
          Length = 639

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 107/684 (15%), Positives = 197/684 (28%), Gaps = 128/684 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQV-SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E  E +   +  L    V    + + +  +      +      ++        +E  
Sbjct: 68  AGDEMRERVEAIVPGLAERTVIGTFHSFCAQVLRQHGSHL-----AIKPDFGIYDQDEDR 122

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           + L    L Q  +          + +     ++L+ S     K    F   K  +     
Sbjct: 123 AELLKDALEQAASH--GAAVTADDTRWLRAIDQLRSSLVSPQKAAKHFRDPKAGER---- 176

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              A  +   YE A ++  ++DF  +I++T  L  +      +  +I Q   + L+DE Q
Sbjct: 177 ---AARVYEIYENALRERNIMDFNGMILDTCRLAHQ---VPAVAARIRQSYPYWLLDEFQ 230

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+  Q+ +IR L  D F         + +F V D+ Q IY + GA  +++   +     
Sbjct: 231 DTTPAQYRLIRFLAGDKF---------KNVFVVADDDQIIYQWAGASYRQIAAFREHFAP 281

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     II+L  + R   +I+   + + +                          G
Sbjct: 282 D---------IIQLVENRRCPPEIVQAANNLIAHNAER-------------------TPG 313

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              L     S   +  +    + T    ++ QE +A   A                    
Sbjct: 314 KQPLVPTRPSDGAAIIDRAFATETEEAQAIAQEIAAKGEA-------------------- 353

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                      VL R R     +    R L     I      R           L +   
Sbjct: 354 -----VWGRTAVLGRTRAILQPVLDELRKLGVAASI----ATRRDRFVSPQFVWLQSCLD 404

Query: 427 FILSQEDDLSF--VCMLKSPLFNFSEDDIFKICTQRHETETVYEYI----QKFANCGISK 480
             L   D  +F  +    + +     D        R    ++ EY         N   S 
Sbjct: 405 LSLRPTDRRAFTTMAAAANRITGIELDVAILAAEARSSDASLLEYWALAANNAGNDIASS 464

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                  + +           +    +          IS    +      E     +R E
Sbjct: 465 LAEFALRLVQSRS-TWRKVVSEAIAWLPQTADSSNGIISDAEEDRTA--WETAAQAIRVE 521

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           + S   L EL+  +   P           + VR++T+H AKGLE   V++     Q+   
Sbjct: 522 KGSQPDLDELLQGIALRPKEPPLD----PSAVRLLTIHAAKGLEFEYVWVTGVAEQILPS 577

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                             L      +  EE  R  +V +TR   
Sbjct: 578 -------------------------------WQSLKAGASPAELEEERRNFFVAVTRTQK 606

Query: 661 QLIICKHSNTSNEKKSNQRTWYDM 684
           QL++   +     ++   R   +M
Sbjct: 607 QLVLTHAAQYRGWQRQPSRFLAEM 630


>gi|291454017|ref|ZP_06593407.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
 gi|291356966|gb|EFE83868.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 743

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/548 (15%), Positives = 160/548 (29%), Gaps = 158/548 (28%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE+ K+   V+DFED+++ T  +L+       I   +  +  H ++DE QD S
Sbjct: 202 LAQIYARYEQLKRDRGVIDFEDVLLLTIGILQD---RRDIADHVRAQYQHFVVDEYQDVS 258

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             L  VGD  Q+IYSF GA P+ +L  +        
Sbjct: 259 PLQQRLLELWLGDRDS----------LCVVGDASQTIYSFTGATPEHLLNFR-------- 300

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               + ++++L   +RST  I+ + + + S           +   +   S R        
Sbjct: 301 VRHPEATVVKLVRDYRSTPQIVHLANGLLSQARGR-----AADHRLELVSQRDTGPEPQH 355

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                           +       A   A  I ++I            
Sbjct: 356 I---------------------------EYGDEPSEAEGTARRIRDLIAAG--------- 379

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            + A +I VL R    + L          D  +           +   +++  A  R   
Sbjct: 380 -VPAGEIAVLFRTNGQSGLYEQAL----TDAGVPYQLRGAERFFERREVREAQAALRGAA 434

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
               + + +             D+      +             A  G    +   + + 
Sbjct: 435 RFGGNDAAL-------------DLAHDLASQVRAVLSASGWSAQAPVGSGASRDRWESLA 481

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L  +A+                                                +SL +
Sbjct: 482 ALARLAEDFGAAQ----------------------------------------PDASLAD 501

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++EL++   +           V + ++H AKGLE   VFLV     +            
Sbjct: 502 FVTELDERAASQHAPTVQG---VTLASLHAAKGLEWDAVFLVGLTEGMMP---------- 548

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                    +         EE  RLLYVG+TRA  +L +    +
Sbjct: 549 -------------------------ITYARTDEQLEEERRLLYVGITRARFRLTLSWSLS 583

Query: 670 TSNEKKSN 677
            +   +++
Sbjct: 584 RAPGGRAH 591


>gi|57167773|ref|ZP_00366913.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter coli RM2228]
 gi|305432203|ref|ZP_07401367.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter coli JV20]
 gi|57020895|gb|EAL57559.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter coli RM2228]
 gi|304444746|gb|EFM37395.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter coli JV20]
          Length = 676

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 98/615 (15%), Positives = 193/615 (31%), Gaps = 180/615 (29%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y E KK+   +DF                   +  +   E + IL+DE QD
Sbjct: 168 EIYEDILKEYSEEKKRFNYVDFN----------DLLLNLKTLLNEKKYEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K+     
Sbjct: 218 TNALQSSLIEAF------------ESKSLFCVGDYDQSIYAFNGADINIIGGFKQRF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----KDAQIFSLNKNYRSSRSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V++ D    P   ++   FD                  I+ MI          
Sbjct: 298 ----ELIVTRKDEFKAPSLLTFEELFDQ--------------YQNIAKMI---------L 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       I    R       I+ V        + L +K   A+   
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGIEVALRE----QGIASVRKGSGSFFESLEVKAFSAMLAL 386

Query: 428 ILSQEDDLSFVCMLK-----------------------SPLFNFSEDD---IFKICTQRH 461
           +++ +D ++F+ +++                       S +  F E D     +   +R+
Sbjct: 387 VVNPKDIMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGSLIRGFLEPDKSVNLQNHQKRN 446

Query: 462 ETETVYEYIQKFANCGISKF-------------------QHVIKYIHELIHIAQFCSPHD 502
               ++  +++ A+    KF                      ++ I+  +  A       
Sbjct: 447 YQLGLFADLEELASENRFKFESEFNAHPILKLSKINDLCAKNLEKIYFFLKKAMETKHSL 506

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ---------------NSYSSL 547
               ++      ++       +        ++   + E                 +YS +
Sbjct: 507 ALVNLICENSFYKEICEELAIKRATNKAGQVDLLRKKENLEKIETKFNVLKELTKNYSDI 566

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            +  + L      +     +N   V +++VH +KGLE  +VF++D     F ++ +  M 
Sbjct: 567 YKYYNFLTLGASEM-----SNGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMSMG 621

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                                EE  RL YV +TRA + L +   
Sbjct: 622 GS----------------------------------LEEERRLFYVAVTRAKNILYLSYA 647

Query: 668 SNTSNEKKSNQRTWY 682
               N+K +   + +
Sbjct: 648 KYDKNKKTAFTPSRF 662


>gi|167738899|ref|ZP_02411673.1| DNA helicase II [Burkholderia pseudomallei 14]
          Length = 370

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 119/342 (34%), Gaps = 72/342 (21%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+   +   + + F +L +     + +  K ++               K  Q      ++
Sbjct: 96  LRAHYRDAGLPQTFQILDTA---DQLSAIKRLMKAANVDDEKYPP---KNVQYFINNAKE 149

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    +   +T +       L   YE+  ++  V+DF +L++   +LL        +R  
Sbjct: 150 QGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVDFPELLLRCYELLAHNP---PLRAH 206

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QDT+ +Q+  ++ L                +FAVGD+ QSIY+F GA
Sbjct: 207 YQARFKHILVDEFQDTNKLQYAWLKLLAG----------GHNAIFAVGDDDQSIYAFRGA 256

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               +   +   + R        ++I+L  ++RS  +IL   + + +   +  G +  + 
Sbjct: 257 NVGNMRDFEHEFRVR--------NLIKLEQNYRSHGNILDAANHLIANNAHRLGKNLRTD 308

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G    V+++                          + ++ +  A  I   
Sbjct: 309 ---------AGHGEPVRVY--------------------------EAATDAQEAAWIVEE 333

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           I +++             +   ++ VL R    +  I     
Sbjct: 334 IRSLVNAG----------LARSEVAVLYRSNAQSRSIEHTLM 365


>gi|150017986|ref|YP_001310240.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
 gi|149904451|gb|ABR35284.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
          Length = 691

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 95/630 (15%), Positives = 212/630 (33%), Gaps = 148/630 (23%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI---KIRDRFNTYKMFK 121
             +LL      +K   +K+ +  E +++     + +++ + +     +++ R     + +
Sbjct: 96  ALNLLKEVLPIEKIRYEKDFLVIEPDEELDIALQIIQEEKFKIKYKNRLKKRLEQAMVIE 155

Query: 122 STLASLTLAKY----LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                ++        L    +E K K   + F D++ N N LL +         K++ + 
Sbjct: 156 KEEEKISPYDDDIFKLIELLKEEKIKQNKMSFSDILQNANLLLGEH--------KLEPKW 207

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             I+IDEVQD+  IQ + I  L  +             LFAVGD  Q IYS+ G+    V
Sbjct: 208 --IIIDEVQDSDKIQLDFIDKLKGE----------NTKLFAVGDPNQVIYSWRGSSLNVV 255

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              K                + LP+++RS+  IL    + F    +              
Sbjct: 256 YTLKHKY---------NAKELSLPINYRSSNAILEAA-RCFQQNGSR------------- 292

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                           ++   +++     ++  + F+           A  ++  I  + 
Sbjct: 293 ----------------LMGARETENKIIVKNHYNPFNE----------ACYLSDKIKEIH 326

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
            +           +  K+I +  R +  + +   +         I    + +  ++D   
Sbjct: 327 KSG----------VPYKEIAIFYRLQNQSQVFEDVF----LKNDIPFEVSMKKTISDSPV 372

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           +  ++ L RF ++  D  S + +L +  +     +       + +            +  
Sbjct: 373 LNWIIKLFRFCVNPNDFSSAIYVLSNKEYGEKMTEKTARKIVKEQNI--------IKSEL 424

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
           + K    +    ++    +  +  +F   I        +  S    +  + +   L+  +
Sbjct: 425 LEKMHEFLNKCSDIKMAEEIYNYFEFDKYI--------KPTSATYIDDKEAIYALLDIII 476

Query: 538 RN-EQNSYSSLQELISELEQYPPT----IKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
              ++     L  L   +          +K+  +++ + V++MT+H +KGLE   VF+  
Sbjct: 477 EYVKEKQMPFLDGLREFINSSALYGVNILKKDINSDIDSVKLMTLHASKGLEFSYVFITG 536

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +                                        H +   +EE  RL +
Sbjct: 537 VNYGLIP-------------------------------------LHTRDMEEEEEQRLFF 559

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
           VG+TRA D L +  ++N   +K +   + Y
Sbjct: 560 VGITRAKDYLELSYYTNPDYQKAAPGESRY 589


>gi|302558540|ref|ZP_07310882.1| ATP-dependent DNA helicase (UvrD/REP) [Streptomyces griseoflavus
           Tu4000]
 gi|302476158|gb|EFL39251.1| ATP-dependent DNA helicase (UvrD/REP) [Streptomyces griseoflavus
           Tu4000]
          Length = 771

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 92/601 (15%), Positives = 166/601 (27%), Gaps = 160/601 (26%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L A YEE K++  V+DFED+++ T  +L+       I  ++  +  H ++DE QD S
Sbjct: 222 TAQLYAAYEELKRERAVIDFEDVLLLTVAVLQD---RHDIAEQVRAQYQHFVVDEYQDVS 278

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     +             L  VGD  Q+IYSF GA P  +L  +        
Sbjct: 279 PLQQRLLELWLGE----------RENLCVVGDASQTIYSFTGATPDHLLDFRTR------ 322

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 ++++L   +RST  ++ + + + S           +   +   S R      V 
Sbjct: 323 --HPGATVVKLVRDYRSTPQVVRLANGLLSQARGR-----AADHRLELVSQRPAGTEPV- 374

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                       + S     A   A  I  ++ +          
Sbjct: 375 --------------------------FTEYSDEPAEAEGAARRIRELVDSG--------- 399

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            + A +I VL R    +            D  +           D   ++      R   
Sbjct: 400 -VPASEIAVLFRTNAQSETYEQAL----ADAGVPYQLRGAERFFDRPEVRKAGIALRGAA 454

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
               +              S  D       +       E        G    +   + + 
Sbjct: 455 RFGGND-------------SLLDDAPDLPSQVRAVLSGEGWTPQPPAGSGAVRERWESLA 501

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L+++AQ                                                ++L +
Sbjct: 502 ALVNLAQDF----------------------------------------AAARPGATLAD 521

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L++EL++               V + ++H AKGLE  VVFLV     +            
Sbjct: 522 LVAELDERAGAQHAPTVQG---VTLASLHAAKGLEWDVVFLVGVAEGMMP---------- 568

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--H 667
                                    +         EE  RLLYVG+TRA ++L +     
Sbjct: 569 -------------------------ITYAKTDEQVEEERRLLYVGVTRARERLHLSWSLS 603

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
            +           + + +    H       +  T  + +  + A                
Sbjct: 604 RSPGGRPNRRPTRFLEGLRPGSHTAAARGGVAGTGGVERGSFGAASAPAAPAPRRRQRSP 663

Query: 728 E 728
            
Sbjct: 664 A 664


>gi|296532160|ref|ZP_06894921.1| double-strand break repair helicase AddA [Roseomonas cervicalis
           ATCC 49957]
 gi|296267519|gb|EFH13383.1| double-strand break repair helicase AddA [Roseomonas cervicalis
           ATCC 49957]
          Length = 208

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 93/206 (45%), Gaps = 8/206 (3%)

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT----FNRGLIIHKLLQVIFTL 796
                   +  +    L+PS +  + +T   +           F RG +IH LLQ +   
Sbjct: 2   PAWLGRAADPESVALTLSPSALPGEEETPTAAPHGRADPTGERFRRGRLIHALLQHLPEH 61

Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
           P  +R+     +  +        +    L  + RLLE+P +  A    S +E  ++G +N
Sbjct: 62  PAAERRALAERFLARPGHGLTEADRTATLEEVLRLLEHPALVAAFGPGSLAEAPIAGMVN 121

Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
                  ++G++D++ I+ + + I +YKT+   P E + +P  ++ Q++ Y  +L+  +P
Sbjct: 122 ----GQRLAGQVDRMLITPERVMILDYKTNRPPPSEAKDVPTLYLRQMAAYRALLRQIFP 177

Query: 917 NKSLVCLLIYVSEPKVFIIPQNKLNK 942
            + + C L++    +   +PQ  L++
Sbjct: 178 GREVQCWLVWTWSARAMELPQAALDR 203


>gi|239917994|ref|YP_002957552.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|281415830|ref|ZP_06247572.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|239839201|gb|ACS30998.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
          Length = 709

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 97/711 (13%), Positives = 189/711 (26%), Gaps = 163/711 (22%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAHYEEAKKKNCVLD 148
                DL  +++ ++             K  +       T    L   YEEAK    ++D
Sbjct: 132 RAGLRDLAGEIEWAKVSLHAPEGYAEAAKEREMPAGWTATTVARLYTGYEEAKTARNMID 191

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           FED+++    +L        I   I  +    ++DE QD S +Q  ++     D      
Sbjct: 192 FEDVLLILVGILSTEP---QIAATIRDQYRVFVVDEYQDVSPLQHRLLDLWLGD------ 242

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                  L  VGD  Q+IYSF GA  + +   +              +++ L   +RS+ 
Sbjct: 243 ----RGDLCVVGDASQTIYSFTGATSRFLTDFRERYPA--------ATVVRLVRDYRSSP 290

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            I+   +++ +    A                   +  T+  W   +     +       
Sbjct: 291 QIVEAANRLLADRTKAGE-----------------RDRTMPRWPDPLELVSQRPPGPDLV 333

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
           +    D   +       A  +A  I+ +I             + A +I VL R    +  
Sbjct: 334 FAECTDDEAE-------AGWVADRIAALIDDG----------VPASEIAVLFRTNGQSQA 376

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                    +   I               ++D +   R       DL+   +        
Sbjct: 377 FETAL----SSAGIGYQLRGGERFFSRREVRDGILQLRAAARAAQDLTGDDV-------- 424

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                    T R                     +   + +H L+++A   +        L
Sbjct: 425 ---------TDRVRDVLSSLGYSAEPPSATGAARERWESLHALVNLAGQLATTRGAEFTL 475

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                                                        + +     +  H+  
Sbjct: 476 TEL------------------------------------------VAELDERAQHQHAPT 493

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              + + ++H+AKGLE   VFLV     +                               
Sbjct: 494 VQGITLASLHSAKGLEWDAVFLVGLSEGLMP----------------------------- 524

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                 +     ++  +E  RLLYVG+TRA   L +    +     +S +R    +    
Sbjct: 525 ------ISFAETQAEVDEERRLLYVGITRARQHLSLTWTLSRGTGGRSTRRPSRFLWAID 578

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                  +      S           +      T  +  ET  +      + + L  P  
Sbjct: 579 PTLGGTREHAPARGSAAGPTAPRRRGAKVAVCRTCGKPLETGAERK----VGRCLDCPAT 634

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            D      L      T  +  + + +          ++  + + +   P  
Sbjct: 635 YDEAVLEELRDWRTRTAAEMRMPAFVVFTDA----TLV-AIAEAMPKTPAE 680


>gi|257068321|ref|YP_003154576.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
 gi|256559139|gb|ACU84986.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
          Length = 710

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 97/750 (12%), Positives = 189/750 (25%), Gaps = 180/750 (24%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A    +    + +      L +          + +          D+  +++ 
Sbjct: 102 ARTFHSAALRQLRHFWPRVVGGAMPDLLTNKFAGVGEACQRLHLSVDRAALHDIVAEVEW 161

Query: 103 SQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           S+   +         +  +    +         +   YEE KK+  V+DFED++++    
Sbjct: 162 SRVSMLTPESYPQAAQQARRPGVAGFDARSISRILTQYEEVKKERGVIDFEDVLLHMVGF 221

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L +    + +  ++  +  H ++DE QD S +Q  ++R              +   L  V
Sbjct: 222 LTE---RSDVAREVRGQYKHFVVDEYQDVSALQHSLLRLWLG----------TSDDLCVV 268

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IY+F GA    +L  ++  ++           I L  ++RST +I+ + + V  
Sbjct: 269 GDAAQTIYTFAGARASYLLDFRKEFKR--------ARTIRLERNYRSTPEIVRMANTVLD 320

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             +         T   R       + G   L E                           
Sbjct: 321 GAQGR-------TRETRLTLVSQREGGPPPLVESFPDDP--------------------- 352

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A  IA  I++++               A +I +L R    +             
Sbjct: 353 ----AEADGIADRIADLVSQGRP----------ASEIAILFRTNSQSEAFEQAL----TF 394

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I  +        +   ++  M   R     E       +                   
Sbjct: 395 RGIGYLVRGGDRFFERQEVRRAMVSLRAATRVEQLDPARAV------------------- 435

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                   +     A       +     ++ L+ +                        +
Sbjct: 436 --RDILSQQGWSPTAPETTGAVRDRWDSLNALVGLTDT-------------------VTT 474

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           R G  ++DV+ E                                  +   + V + +VH 
Sbjct: 475 RPGTTMVDVVRELEERAEA-------------------------QAAPVVDGVTLASVHA 509

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE PVVF+V     +      K                                   
Sbjct: 510 AKGLEWPVVFVVGASDGLLPISMAKTP--------------------------------- 536

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHS---NTSNEKKSNQRTWYDMVYDSFHNDERVK 696
             +  EE  RL YV +TRA D L +   +     +   +   R    ++           
Sbjct: 537 --AEVEEERRLFYVALTRARDLLTVSWAAARTPGARGSRKPSRFLDGVLDHPDAPRPSPG 594

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLERE-------ETIKQLMDEQKIPKKLFSPIKN 749
                         A          +P E+         +         +        + 
Sbjct: 595 AGPRRTGRRSATVYAECRVCGQGLVSPREQRLGRHEGCPSAAGPDLLAALRTWRREQARQ 654

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQT 779
               PY +                  +   
Sbjct: 655 QGTAPYAILTDAALDAVAERCPRTEEELLA 684


>gi|237745022|ref|ZP_04575503.1| DNA helicase II [Fusobacterium sp. 7_1]
 gi|229432251|gb|EEO42463.1| DNA helicase II [Fusobacterium sp. 7_1]
          Length = 692

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 111/764 (14%), Positives = 226/764 (29%), Gaps = 163/764 (21%)

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +  VGDE QSIY F GA  + +L   +   +       +  +I L  ++RS   I+   +
Sbjct: 33  ICVVGDEDQSIYRFRGASAENILNFSKYFNED------ECKLIVLNENYRSVNHIVEFNN 86

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           +  +  +                            W     + +     + +   S    
Sbjct: 87  RWINAID----------------------------WHGNRFEKNIVSMRENDYMASNVFH 118

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +   +    + R     I  +   + I             I +L            L   
Sbjct: 119 ISGSTLDENI-RNTVTFIKKLKQNNKIK--------NYNQIAILF-SHFKDRSAKKLEDA 168

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
           LK +  I V      +  +   +K        IL+          L   L      D+ +
Sbjct: 169 LKKE-NIEVYSPRTKVFFEMYEVKLTFG---IILACFKKYFPEEALDIYL--LECLDLAR 222

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           +  ++     V+              +  I+ I E      F S ++ F  +L     + 
Sbjct: 223 LEIRKDNEFLVW-------------IKEKIENISEY----SFNSLNEIFYELLNFSYYKN 265

Query: 516 QFISRFGNEVIDV--LDEFLNFTLRNE---QNSYSSLQE--------LISELE----QYP 558
                   E      L          +    +   S+++            LE       
Sbjct: 266 VLQEENPIEARANHNLAILTKIFKNFQKYVHSKKISIEDDFSIIKYFFTKYLEILKQSRV 325

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
             I       ++ +  +T+H +KGLE PVV +    S+      + +   +  L +    
Sbjct: 326 DEIFSEEDYPNDCIPFLTIHQSKGLEFPVVIVFSLYSKPNVSGDLSRQTSIDRLINSN-- 383

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                      ++ R  YV  +RA + L++  +    +E   N 
Sbjct: 384 ----------------SKISEIDKEYFDFYRKFYVAFSRAKNLLVLSCYEKGVSE---NF 424

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
           + ++  V         + +I L     KDE     ++T                      
Sbjct: 425 KPFFYSVRGVNSLQFDISQINLDEVSKKDERRILSYTT---------------------D 463

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT--- 795
           I    + P+K  +      +                 D + FN G+I HK ++ I     
Sbjct: 464 IALYRYCPMKYFLVREKEYS---------------TFDKKVFNLGIITHKAIEHINKSFL 508

Query: 796 -----LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
                  ++  ++ + +              + ++  + + +++             E S
Sbjct: 509 QKQEIFSDNYIEDLVKNIYKFQNIDLD-NNVERIIDIVKKYIKDE--KDNFKYIKKVEAS 565

Query: 851 VSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              +      + I+ G+ID I   +  I I ++KT  +           +  QLS+Y+ +
Sbjct: 566 ---EFRVED-NYILYGQIDLILEDENEIKIIDFKTGKY---NEIEFSSNYRQQLSLYKLL 618

Query: 911 LKDSYPNKSLVCLLIYVSE---PKVFIIPQNKLNKAFAEISTKI 951
           L+  Y +K +   L Y+ E    K  +I    L +    I+  +
Sbjct: 619 LQKKY-DKEIKTYLYYLEEDEPKKEILIDDENLKEDLENINKTV 661


>gi|227486206|ref|ZP_03916522.1| ATP-dependent DNA helicase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235837|gb|EEI85852.1| ATP-dependent DNA helicase [Anaerococcus lactolyticus ATCC 51172]
          Length = 853

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 112/832 (13%), Positives = 224/832 (26%), Gaps = 207/832 (24%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            A  +   +E   K+N +++F+ ++ +   LLK       IR    + I+ +++DE QDT
Sbjct: 172 FAGKIFKTHERLLKENNLINFQMILRDFYLLLKDPVRGEEIR----KGIDFVIVDEYQDT 227

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ E+  +L  D           + +   GD+ QS+YSF GA+P+ +           
Sbjct: 228 NYIQQEIAFNLVRD-----------KEIMVFGDDDQSLYSFRGADPRNLTEFSDNF---F 273

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
              G K    +L +++RS   I+                                     
Sbjct: 274 KKKGHKAYTYKLDINYRSNQAIIE-----------------------------------K 298

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            L       +  +      S     +      + +   + +A  I  +            
Sbjct: 299 SLKWLDNKDYAGENKKTLRSVDKEKNPNTIVRARANELKNLATIIRILKQD--------- 349

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             I    I  L              +       I V+            I+  + L   +
Sbjct: 350 --INLGQIAFLFPSLNHA--YVSKLQAYFEKAGIRVLNKKSSEFFRRDEIRGFIYLIMNL 405

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
              +        +                 +      +Y   +        + Q+ I   
Sbjct: 406 AEIKTFYEDPSTIYGAF----------AKNKAKYKNYLYYLTRDEIFKEDKEIQNFIAS- 454

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNEQ--- 541
                          F   +G +  R+  I       G  V+  +   +N     ++   
Sbjct: 455 ----EKENNLPLTSLFYKAMGLEYFRKFLIMDEEDLDGARVLGNISTMINLAKDFDEIFK 510

Query: 542 -NSYSSL--QELISELE----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             +      + + S LE               ++ + V  MT+H AKGLE  VVF+    
Sbjct: 511 NENPKDHYKEFINSYLEYLFVSRAIEEYANIDSHKDAVNFMTIHQAKGLEFEVVFISGLF 570

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                 K        P+                              S  +++ R  Y G
Sbjct: 571 DSPKPAKPGFLEKPDPNDF----------------------------SYVKDFYRKYYTG 602

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            TRA + L++  +S      K ++                                    
Sbjct: 603 FTRAKNLLVLLDNSEDYKLSKFSESF---------------------------------- 628

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                         ++ + +  ++  +K    +     +  +    ++  +    L    
Sbjct: 629 -----------PRTSLLKSLAFERSEEKKEKKVLAYTTDIEVFKTCSLKYRFVRKLNFRS 677

Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL-E 833
            + +  + G   HKL +    LP+ K                           +   L  
Sbjct: 678 LNTRALSFGTNTHKLAEYYALLPKDK-------------------------AKLLDFLEN 712

Query: 834 NPMMTTAMSCDSYSEV---SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
           NP     +      +     V       +   I+ G++D          I + KT  +  
Sbjct: 713 NPEYQEPIENFIKRDFKITGVETNYKLDRNFYILQGKVDISLEDGS---ILDIKTGSYN- 768

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIPQNKLN 941
              E     +  QL  Y  ++     +  L    L ++ E ++  I     +
Sbjct: 769 ---EDFISAYKGQLMTYRHLI--LGNHHPLNKMYLYFIEEDRLIEIEVTDFD 815


>gi|21223557|ref|NP_629336.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
 gi|9714476|emb|CAC01318.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)]
          Length = 785

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/548 (15%), Positives = 153/548 (27%), Gaps = 160/548 (29%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L A YE+ K+   V+DFED+++ T  +L+       +  ++  +  H ++DE QD S 
Sbjct: 237 AQLYAAYEDLKRARSVIDFEDVLLLTVAVLQD---RHDVAEQVRAQYQHFVVDEYQDVSP 293

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++     D             L  VGD  Q+IYSF GA P  +L  +         
Sbjct: 294 LQQRLLELWLGD----------RDDLCVVGDASQTIYSFTGATPDHLLDFR--------G 335

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++++L   +RST  ++ + + + +           +   +   S R         
Sbjct: 336 RHPGATVVKLVRDYRSTPQVVHLANGLLAQARGR-----AADHRLELVSQRPAGPEP--- 387

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                      + S     A   A  I  +I +           
Sbjct: 388 ------------------------GYAEYSDEPAEAEGAARRIRELIDSG---------- 413

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           + A +I VL R    +            D  +           D   ++   +  R    
Sbjct: 414 VPAAEIAVLFRTNSQSETYEQAL----ADAGVPYQLRGAERFFDRPEVRKAGSALRAAAR 469

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              +              S  D       +       E        G    +   + +  
Sbjct: 470 FGGND-------------SLLDDAVDLPSQVRAVLSGEGWTTQPPAGSGAVRERWESLAA 516

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQE 549
           L                                         +            ++L +
Sbjct: 517 L-----------------------------------------VGLAQDFAAARAGATLSD 535

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L+ EL++               V + ++H+AKGLE  VVFLV     +            
Sbjct: 536 LVVELDERAGAQHAPTVQG---VTLASLHSAKGLEWDVVFLVGVAEGMMP---------- 582

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                    +         EE  RLLYVG+TRA ++L +     
Sbjct: 583 -------------------------ITYAKTDEQIEEERRLLYVGVTRARERLHLSWALA 617

Query: 670 TSNEKKSN 677
            S   + N
Sbjct: 618 RSPGGRPN 625


>gi|289769231|ref|ZP_06528609.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
 gi|289699430|gb|EFD66859.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 780

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/548 (15%), Positives = 153/548 (27%), Gaps = 160/548 (29%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L A YE+ K+   V+DFED+++ T  +L+       +  ++  +  H ++DE QD S 
Sbjct: 232 AQLYAAYEDLKRARSVIDFEDVLLLTVAVLQD---RHDVAEQVRAQYQHFVVDEYQDVSP 288

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++     D             L  VGD  Q+IYSF GA P  +L  +         
Sbjct: 289 LQQRLLELWLGD----------RDDLCVVGDASQTIYSFTGATPDHLLDFR--------G 330

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++++L   +RST  ++ + + + +           +   +   S R         
Sbjct: 331 RHPGATVVKLVRDYRSTPQVVHLANGLLAQARGR-----AADHRLELVSQRPAGPEP--- 382

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                      + S     A   A  I  +I +           
Sbjct: 383 ------------------------GYAEYSDEPAEAEGAARRIRELIDSG---------- 408

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           + A +I VL R    +            D  +           D   ++   +  R    
Sbjct: 409 VPAAEIAVLFRTNSQSETYEQAL----ADAGVPYQLRGAERFFDRPEVRKAGSALRAAAR 464

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              +              S  D       +       E        G    +   + +  
Sbjct: 465 FGGND-------------SLLDDAVDLPSQVRAVLSGEGWTTQPPAGSGAVRERWESLAA 511

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQE 549
           L                                         +            ++L +
Sbjct: 512 L-----------------------------------------VGLAQDFAAARAGATLSD 530

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L+ EL++               V + ++H+AKGLE  VVFLV     +            
Sbjct: 531 LVVELDERAGAQHAPTVQG---VTLASLHSAKGLEWDVVFLVGVAEGMMP---------- 577

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                    +         EE  RLLYVG+TRA ++L +     
Sbjct: 578 -------------------------ITYAKTDEQIEEERRLLYVGVTRARERLHLSWALA 612

Query: 670 TSNEKKSN 677
            S   + N
Sbjct: 613 RSPGGRPN 620


>gi|313905522|ref|ZP_07838885.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
 gi|313469585|gb|EFR64924.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
          Length = 605

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/628 (15%), Positives = 186/628 (29%), Gaps = 142/628 (22%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+Q             +       K+  +      E+ K+   L   L    ++ +   D
Sbjct: 97  LEQYVPFFRDFRILDTVKEHLFIMKYFKKSGAEDLELKKREAAL---LSNCIEKMVSAYD 153

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R + +               +   Y+    +   +++  LI      +    +      K
Sbjct: 154 RIDEWPGQD---------DKVFKQYKALLYEKRFINYSLLIHEVLMHMDDPQIK-----K 199

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
               I ++++DE QD   +Q  +I+ +           +    L  VGD+ Q+IY F G+
Sbjct: 200 YFTGIRYLVVDEYQDVDDLQEALIKGIA----------NCGANLCVVGDDDQTIYQFRGS 249

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               ++R     +            I L  ++RS   I+ V D V S           S 
Sbjct: 250 NADNMIRFADRYEN--------VKTINLETNYRSGKAIVDVADCVISNNATRLTKRMISG 301

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G  G+VQ    V    +                           R +A  
Sbjct: 302 G---------GFTGSVQGECFVGVDEE--------------------------YRNLAQN 326

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I ++              ++  D+ +L+RKR     +  L R L+ ++ I  +  +    
Sbjct: 327 IKSLSSE-----------VKYGDMAILIRKRS---RLPELIRALELNH-IPYIAEESEEF 371

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                 +    +  ++ +  D+              +   I        E  ++   I+ 
Sbjct: 372 FSSEYYRKFCNIFEYLENPADE--------------NRQKIIDDWKGIVEPRSLKTAIKY 417

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFF------TLILGAKKGRQQFISRFGNEVI 526
            +     K +  ++  H+ I        H         + IL      Q +         
Sbjct: 418 LS-RSSEKNERFVELFHQFIENLGLDDTHSCIKYTQGFSEILSDFD--QVYEHDSWTVRT 474

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             ++ F+  T   E    + L++                  + + V+IMTVH +KGLE  
Sbjct: 475 SDINTFIQITAETEYKREALLKK-----------------DHDDAVQIMTVHKSKGLEFD 517

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VFL D     F  + +        L                  +  +  +   +S  ++
Sbjct: 518 AVFLPDLQKGFFPSQKVGGKKYYSVLG----------------GLFEEQKEKY-ESDLQD 560

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEK 674
             +L YV +TRA   +            
Sbjct: 561 ERKLFYVALTRAKKFIYAYADVEKKEAS 588


>gi|311898266|dbj|BAJ30674.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
          Length = 766

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 98/739 (13%), Positives = 199/739 (26%), Gaps = 154/739 (20%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A    Q    + +   F  L    +            +    +  DL  +++ 
Sbjct: 106 ARTFHSAALRQLQYFWPRAVGGEFPRLLERKVQLVAEAAGRTGLRVQRTELRDLTAEIEW 165

Query: 103 SQ-DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
           ++  + +         K  +           +   YEE K+   ++DFED+++ T  +L+
Sbjct: 166 AKVTQIVPDDYPTALAKSGREAPRDPAETVRVYHGYEELKRTRGLIDFEDVLLLTAAVLE 225

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                  +  ++  +  H  +DE QD S +Q  ++   T              +L  VGD
Sbjct: 226 D---RPEVAERVRSQYRHFTVDEYQDVSPLQQRLLEQWTGG--------DGGASLCVVGD 274

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q+IYSF GA P  +L  +              ++++L   +RST  ++ + + + +  
Sbjct: 275 ASQTIYSFTGATPDHLLNFRHR--------HPGATVVKLVRDYRSTPQVVHLANGLLAQA 326

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                  + +   +   S R      V                             +   
Sbjct: 327 RG-----QAAQHRLELVSQREAGPEPV---------------------------YREYQD 354

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               A   A  I +++GT           ++A ++ VL R    + +       L     
Sbjct: 355 EPTEAESTARLIRDLLGTG----------VRASEVAVLFRTNSQSEVYEQALADL----G 400

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I+          +   +++   L +      DD                 D+        
Sbjct: 401 IAYQLKGAERFFERPEVREAGVLLKGAARAADDPLTA----------GAPDLAAQVRAVL 450

Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            T             G    +   + ++ L+ +A                          
Sbjct: 451 ATRGFTPA----PPSGSGAVRERWESLNALVRLAGE------------------------ 482

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                             +        +L + + +        H+     V + ++H AK
Sbjct: 483 -----------FETARTADGLG----ADLAAYVAELDARAAAQHAPAVEGVTLASLHAAK 527

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VFLV                                           +I     
Sbjct: 528 GLEWDAVFLVGLSEGTLP-----------------------------------IIYAKTD 552

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              EE  RLLYVG+TRA   L +    + S   +++++    +      +     + +  
Sbjct: 553 EQVEEERRLLYVGVTRARRFLTLSWALSRSPGGRASRKPTRFLDGLRPGSGSPGARGRGG 612

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
               +                     E       E K+ +    P   D      L    
Sbjct: 613 RGGVEPGAERPAARRSRGGPVKCRVCERTLTDGRELKLRRCEGCPSTMDEALYERLREWR 672

Query: 762 IDTKGKTNLESLLSDNQTF 780
                + ++ + +      
Sbjct: 673 AVKAKEQSVPAYVVFTDAT 691


>gi|257066543|ref|YP_003152799.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
 gi|256798423|gb|ACV29078.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548]
          Length = 597

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 86/550 (15%), Positives = 163/550 (29%), Gaps = 121/550 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K +N  +DF+D+ +    L++       +   I ++  +I +DE QDTSLI
Sbjct: 156 QIYRAYENFKIRNYYIDFDDMQVMALKLIENDP---RLLNSIRKKYRYIQVDEGQDTSLI 212

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  +                L  V D+ QSIYSF  A    +L  K          
Sbjct: 213 QFKIIEKIVAPL----------NNLMIVADDDQSIYSFRAANVSYLLNLKSKYPN----- 257

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                IIE+  + RS+  I+ +      I ++       +                   W
Sbjct: 258 ---LKIIEMTENHRSSKKIVNLSKAFIDINQDRYPKDLFTKN---------------DFW 299

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
            Q+  +       Q +      +   +                                 
Sbjct: 300 GQISIKSLRNVRDQYKFIIENMNQEEKN-------------------------------- 327

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 +L R       I       + D+ +++         +   I DL  +  F    
Sbjct: 328 -----AILFRNNIQALNIISFLMEDEIDFSVNI---SSLNFFESKIIDDLFNIIEFSDDF 379

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
           +    F  +         ++++ K+     ++      Y     +  I       K +  
Sbjct: 380 DRIDLFCEIYYKIGTFLKKEEVDKLSHKALNKNVFEALYEMDLEDYKIETLIQKEKQLKH 439

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSSLQ 548
           +  +    S     + I      +    +       +    D F+   +        +L+
Sbjct: 440 IRKL----SLDKKISYIYKYMDYKSYISNFSKKYREEVVNKDLFIESMVNF----TKNLE 491

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            +     +     K+  S+  N + + T+H +KGLE   VF+++     F      +  +
Sbjct: 492 SIEDFYSKKDKLEKKLSSSRSNLI-LSTIHKSKGLEYDNVFVINMVKNEFPIIVDNEDIV 550

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                               EE  R++YV MTRA   L I    
Sbjct: 551 N---------------------------------KIEEERRVMYVAMTRAKKNLHILTIK 577

Query: 669 NTSNEKKSNQ 678
              +EK S  
Sbjct: 578 KRGSEKLSPS 587


>gi|226358113|ref|YP_002787852.1| ATP-dependent nuclease subunit A (AddA),; UvrD/REP helicase,;
           ATP-dependent exoDNAse (Exonuclease V) beta subunit
           (RecB) [Deinococcus deserti VCD115]
 gi|226319756|gb|ACO47750.1| putative ATP-dependent nuclease subunit A (AddA),; putative
           UvrD/REP helicase,; putative ATP-dependent exoDNAse
           (Exonuclease V) beta subunit (RecB) [Deinococcus deserti
           VCD115]
          Length = 553

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/528 (15%), Positives = 169/528 (32%), Gaps = 48/528 (9%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
            +  W     + ++    ++         + +  Q   QA+ +  +           L  
Sbjct: 68  ARRAWQAVTKEWNEAAGALAGLGGPAGDELERFRQAAVQAASSAPVLGDALRAVRRALDG 127

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF-KSTLASLTLAKYLNA 135
                     ++    +    + LK        + +     +   ++ LA   L  ++  
Sbjct: 128 HKGTIGKGWNKDQKAATHAALKTLKALAARHDLLGESTPDSQAHDEAVLALGALFAHVRQ 187

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            + E K +  +  F DL    +  L++    A ++        H+LIDE QDT+ +QW +
Sbjct: 188 RFAELKAEQEIATFADLETYADTALQQ----AAVQAYYADRWTHLLIDEAQDTNPVQWRI 243

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L            S   L  VGDEKQSIY+F  A+ +     +   Q R        
Sbjct: 244 LSALAG----------SGVNLTVVGDEKQSIYAFRRADVEVFRAAQTEVQAR------GG 287

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGL-SEDSTTTIRHRSSRIGQVGTVQLWEQV 314
           S+I + +SFR+ A +++ ++  F        +    +       + R             
Sbjct: 288 SVIPMGMSFRTHAGLVSAINTYFENLMQGPDMDRPTAARFEPLTAFRAESPSGSDTACVE 347

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG---KKRVI 371
                                  + +  +  A  +A  I  ++       +      R +
Sbjct: 348 ---------------LHALQGEDEATLRAAEAAYLAGRIQALLLAGQPVYDRALNGTRPL 392

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  DI +L R R    +             +  V +    L D   + D   L + +   
Sbjct: 393 RLSDIALLYRARTHQQVYENALAA----AGLPYVVHGGRGLYDRPEVLDATNLLQAVADP 448

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             D+S V +L+ P  + ++  +     +R + E+ +    + A+      Q  + +I EL
Sbjct: 449 TADVSLVAVLRGPHVHLTDQILLDTAQRRQDGESFWTAAGRSAH---PDVQAAVAWIREL 505

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLR 538
              +   S                   ++  G   ++ +  F      
Sbjct: 506 RAASARLSASQLLMDADARTGALLVHAAQPDGPRRLENVRRFQALLRA 553


>gi|284036711|ref|YP_003386641.1| exodeoxyribonuclease V [Spirosoma linguale DSM 74]
 gi|283816004|gb|ADB37842.1| Exodeoxyribonuclease V [Spirosoma linguale DSM 74]
          Length = 1120

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 121/832 (14%), Positives = 244/832 (29%), Gaps = 123/832 (14%)

Query: 95   DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE-AKKKNCVLDFEDLI 153
             ++  +     E           ++ + +   +TL   L  H ++ A  K   L+F+DL+
Sbjct: 303  PVQAMIDNMAAELGACISEI--LRIREESNHQVTLFDCLLPHLQKLALLKQMRLEFDDLL 360

Query: 154  IN---------TNDLLK--KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
                          +L     +   ++  ++  + NHILIDE QDTS +Q+  +  L E+
Sbjct: 361  RKDGRVHISEFNKKILNIVASEPVPFLYERLGTKYNHILIDEFQDTSRLQFANLLPLIEN 420

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR--------------INQKRA 248
                 + +       AVGD KQ+IY F G +  +++   R                  R 
Sbjct: 421  SLGADHFN------LAVGDGKQAIYRFRGGDMDQIVALHRKDLDSLKQAHNPGSWTADRI 474

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                       L  ++RS   I+   +  F                   R          
Sbjct: 475  DMLDGHLKDELLDTNWRSAEPIVRFNNDFFE---------------FTARKFESQHPKLT 519

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS--ASILARRIAYTISNMIGTDTIFSNG 366
             +++     H         +     D + ++ +    + A+ +   + ++       +  
Sbjct: 520  DVFDSQKLFHQKAQPKANLAGHVQIDFVAKDDATDKDLTAQMLEKAMEHL-------NKA 572

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                 +  DI +L RK+     +           +I +V  D   L     +K L+ L +
Sbjct: 573  LNDGYKYGDIAILCRKKSHAKALANELNA----RRIPLVSADSLSLEFSDPVKWLVTLMQ 628

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +   +  L    +L   LF+    DIF   T   +  +V E                  
Sbjct: 629  LLQRPDQKLLRYELLY--LFHRVVQDIFPDNTLTTKLRSVAESDIDALYAY---LAEEGY 683

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV--LDEFLNFTLRNEQNSY 544
             +          +P++    +               N+      L  FL+  L   Q   
Sbjct: 684  PLDPYA--LGQLNPYELAERLTAQFG--------LFNQAEHNPFLFRFLDEVLAFNQKRS 733

Query: 545  SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
              L + +   E     I    +A  N V I TVH +KGLE PVV +     +V       
Sbjct: 734  GHLSDFLLYWEGVRQKISVEGNAR-NAVSIQTVHKSKGLEFPVVIIPFANWRVEPINDST 792

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSR---------------NNIVSDLIKHLKKSTQEEYNR 649
                + S+  D           +R                 +V+   +     T  E   
Sbjct: 793  IWLDLSSIRSDMLTHENSTGELTRLLSAPANTTSKLRGAPAVVAAQYEEELTRTFLENMN 852

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            +LYV  TR +D+L +   +   ++ + N  + +   +       R         +   + 
Sbjct: 853  MLYVAFTRPTDRLYVISEAKDFSKGQQNTISHWLHAFLRDSEVARNCGCAWQEGVFSYQI 912

Query: 710  IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                    H +      E  + +++   +          + + +      +    +    
Sbjct: 913  SLCAEYFPHHKADESLDEIVLDEIVSGHRGQDLQLRRQADRMFDVATFERTRERDRKLCA 972

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
              SL+       RG                     +    ++   L    E   L  S+ 
Sbjct: 973  ALSLI-------RGS--------------ESIDKVLRQLVSE--GLVRQVECDELKQSLL 1009

Query: 830  RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
             ++ +P ++                      +  + G   ++        + 
Sbjct: 1010 GIVSHPALSALFDSTLR-----IDTDRSILSNKRVHGAPHRVVHFPDGHIVL 1056


>gi|123975388|ref|XP_001330278.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3]
 gi|121896327|gb|EAY01482.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3]
          Length = 688

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/630 (13%), Positives = 175/630 (27%), Gaps = 176/630 (27%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-------------AKYLNAHYEEAKKKNC 145
           +L    +++  +       ++       L L                +   Y    K   
Sbjct: 104 RLITENEQYQILSSYLPQPEIADRKQLLLALQLYKVTKKCESEELSSIFEKYIAELKSKE 163

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
           ++DF DLI    ++L+      +      +   + L+DE+QD S  Q+++I +L      
Sbjct: 164 LVDFTDLITYPLEILRNN---QYALQYYQRRFEYCLVDEMQDVSQTQFDLIHTLF----- 215

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                +S   +  VGD+ Q+IY + GA+   +L+ +                  L   FR
Sbjct: 216 -----NSNGHITVVGDDDQTIYGWRGADSSLLLQFQEKF--------TNAETFTLSTCFR 262

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
               I+  + ++    +     S   +       +RI  +G +                 
Sbjct: 263 CPNFIIKAMSELIKNNKIRVKKSIKCSLNEPLGKNRIKILGAL----------------- 305

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                          +    A  +   I  +                 + I VL R RK 
Sbjct: 306 ---------------NQEREAVLVCNEIEKIKNKKP-----------FETISVLFRTRKQ 339

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
           +       + L+      +  +      +  +   +  L   I  ++ D     ++ S +
Sbjct: 340 S------LKILEEMKNRRIQISKNKQKYEGQSFDLICNLLLLISERKFDE---KIVNSEI 390

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
                                             K       I E++   +         
Sbjct: 391 I---------------------------------KKISATNQISEIVGRYKDMRIKSIID 417

Query: 506 LILGAKKGRQQFISRFGNEVI--DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
            I      +   I+   +E    + LD               +  +   EL+     I+ 
Sbjct: 418 DIADKLNLKDNLINDLISESEKPENLD--------------LNPGDFADELKFNQNEIQE 463

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 N V++ TVH AKGLE   VF++   S  +                         
Sbjct: 464 NID---NVVQMTTVHQAKGLEWDNVFIIGLNSGNWPSNRS-------------------- 500

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                               +EE  RL YV M+RA   L +    ++      ++ + + 
Sbjct: 501 ------------------KDKEEKRRLFYVAMSRARKNLFMSFSQSSKPSPYLSEISDFY 542

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                   +E   +    + +  D+ I   
Sbjct: 543 FDIFIEKEEENQMEKSDKSEVKSDKPIELP 572


>gi|163839985|ref|YP_001624390.1| superfamily I DNA/RNA helicase [Renibacterium salmoninarum ATCC
           33209]
 gi|162953461|gb|ABY22976.1| superfamily I DNA and RNA helicase [Renibacterium salmoninarum ATCC
           33209]
          Length = 714

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 99/750 (13%), Positives = 200/750 (26%), Gaps = 163/750 (21%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A    Q    Q +      L            + +          DL  ++  
Sbjct: 87  ARTFHAAALRQLQFFWPQVVGGALPGLLDHKAALIAESARRLRLSTDRAAVRDLASEV-- 144

Query: 103 SQDEFIKIRDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
              +   +       K           +T    +   YE+ K    ++DFED+++ T  +
Sbjct: 145 EWAKVSMLTPETYAQKATDRGTPGGFDVTTMARIFQSYEDVKTDRNLIDFEDVLLLTVGI 204

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L++      +   + ++  H ++DE QD S +Q  ++                   L  V
Sbjct: 205 LQED---QRVAATVREQYRHFVVDEYQDVSPLQQRLLELWLG----------GREELCVV 251

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF GA+ K +L   +           +  +++L   +RST  ++ + + + +
Sbjct: 252 GDASQTIYSFTGADSKHLLEFGQRYP--------EAQLVKLVRDYRSTPQVVQLANSLLA 303

Query: 280 IPENAQGLSEDS-TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
               A  +++ +    ++  + R                                    +
Sbjct: 304 ARRPAGRVADAAWAQPLQLIAQRAAGPTPT---------------------------FTE 336

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            +     A  +A  I  +I +           +QA  I  L R    +           +
Sbjct: 337 CADDEAEAVSVAAKIKALITSG----------VQAAQIAALFRTNGQSEAYEQAL----S 382

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I               ++D +   R       D S+      PL     D +  +  
Sbjct: 383 SAGIGYQLRGGERFFARKEVRDAILSLRAAS--RADTSYDDGQNPPLPQQVRDVLTSLGY 440

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                        + A  G    +   + +  L+ +A   +                   
Sbjct: 441 S------------EQAPAGGGAVRERWESLAALVALADELTV------------------ 470

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                     +D               +L + ++EL++   +           V + ++H
Sbjct: 471 ------ARAPVD----------GGPEFALTDFVAELQERSLSQHAPTVQG---VTLASLH 511

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +AKGLE   VFLV     +                                     +   
Sbjct: 512 SAKGLEWDAVFLVGLSEGLMP-----------------------------------ISFA 536

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                 +E  RL YVG+TRA + L +                  + D +           
Sbjct: 537 DTAKGVDEERRLFYVGVTRAREHLNLSWSLSRTPGGRAHRKPSRFLDGLRQGTAPVSGRN 596

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLERE-------ETIKQLMDEQKIPKKLFSPIKN 749
                 S    +  A       P ++  ER+           Q    + +        + 
Sbjct: 597 FAARAESKLTRKPPALCRVCGKPLSSGAERKIGRCAECPATYQEATFEALRSWRLEEART 656

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                +++              S + D   
Sbjct: 657 AQLPAFMIFTDATLVAIAEARPSSMEDLSA 686


>gi|238764000|ref|ZP_04624956.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia kristensenii ATCC 33638]
 gi|238697817|gb|EEP90578.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia kristensenii ATCC 33638]
          Length = 692

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/649 (12%), Positives = 189/649 (29%), Gaps = 113/649 (17%)

Query: 345 LARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
           +AR+ A  I + + +       + +    R +QA DI +LVR R +  L+      L   
Sbjct: 1   MARQCAAQIRDWLTSGQQGLAQLVTATSSRPVQASDITILVRSRAEAALVRDALSAL--- 57

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
              SV  ++R  + D    KDL+ L + +L+ E + +    + + +       + ++   
Sbjct: 58  AIPSVYLSNRDSVFDTAEAKDLLWLLQAVLAPEQERALRSAMATGMLGLDAQMLDELNHD 117

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
               + + +    +      +          L  + +  +       +L  + G ++   
Sbjct: 118 ERAWDALVDEFDGYRQHWQRR--------GVLPMLREVMAHRHLAENLLATQGGERRLTD 169

Query: 520 RFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                    L E L      L +E      L + I++        +    ++ + V+++T
Sbjct: 170 LL------HLGELLQEAASQLDSEHALIRWLAQQIAQPNHQSDNQQLRLESDRHLVQVIT 223

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE P+V+L   G+       +                          N   +  
Sbjct: 224 IHKSKGLEYPLVWLPFVGNFRQQQDVLYHDRHSFEAL-------------LDLNADEESQ 270

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQL------IICKHSNTSNEKKSNQRTWYDMVYDSFH 690
              ++    E  RLLYV +TRA          +I        E   +      +V     
Sbjct: 271 ALAEEERLAEDLRLLYVALTRAVYHCSIGIAPLIKGGRKKQGESDMHLSALGYLVQQGQS 330

Query: 691 NDER-----VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
            D R     + ++      +     A +                  +    Q       +
Sbjct: 331 GDARYLADKLAELATLAGGDISVSPAGQLDETPWHPQSEALPALAARQFSRQIHDFWRVT 390

Query: 746 PIK------------------NDINEPYILNPSTIDTKG--KTNLESLLSDNQTFNRGLI 785
                                        L+   +  +        +  +  +    G  
Sbjct: 391 SYSGLQQHGSSKSGVSQALNVPLQELLPRLDTDAVGEQALITEPQLTPHTFPRGAAPGTF 450

Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTT 839
           +H LL+ +    +   ++++T    +    +  +    L   +  +++ P+      +  
Sbjct: 451 LHDLLEPL-DFSQPIEQDWLTEQLQQQG--FGEQWSPMLYQWLNDIVQTPLNETGVTLAE 507

Query: 840 AMSCDSYSEVSVSGKINCPKKDI--------------------------IISGRIDQISI 873
                  +E+     I+   +                            ++ G ID +  
Sbjct: 508 LTPQSKQAELQFYLPIDALLQARELDTLIKRYDPLSRQCPALDFQQVRGMLKGFIDLVFC 567

Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPY---------THIAQLSIYEKILKD 913
            Q   ++ +YK++        +             +  Q  +Y   L  
Sbjct: 568 WQGKYYLLDYKSNWLGEDSSAYTNEAMVQAMAEHRYDLQYQLYTLALHR 616


>gi|163857713|ref|YP_001632011.1| ATP-dependent DNA helicase [Bordetella petrii DSM 12804]
 gi|163261441|emb|CAP43743.1| ATP-dependent DNA helicase [Bordetella petrii]
          Length = 707

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 103/719 (14%), Positives = 205/719 (28%), Gaps = 134/719 (18%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQCIEERFSLLSSFFL 74
                  P    +     +   +     T +  ++  T+      + +            
Sbjct: 107 LHATQQAPALPWAGTFHGIGARLLRDCATRIGLSESFTIHDRGDAEDLMGMVRHERGLSA 166

Query: 75  TQKFTPQK----NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           T +  P K     I ++ IN ++P L + LK++     +  D                  
Sbjct: 167 TAERFPLKGTCLAIYSRVINSQAP-LADVLKQAFPWCAQWEDALK--------------- 210

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y +AK+   VLD++DL++  +++++   ++  I        +H+L+DE QDT+ 
Sbjct: 211 -GLFGAYVQAKQDQQVLDYDDLLLYWSEMMQDEVLAREI----GARFDHVLVDEYQDTNR 265

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++ ++              + L  VGD+ QSIYSF  A  + +L       +    
Sbjct: 266 LQSAILLAM----------KPDGQGLTVVGDDAQSIYSFRAATVRNILDFPGQFAR---- 311

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 +I L  ++RST  IL   + V  +       +  +     +R +          
Sbjct: 312 ---PAHVITLERNYRSTQPILDASNAVIGLAAERYTKNLWTDRASSNRPA---------- 358

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                    L   S  +  AR +A  +                 
Sbjct: 359 -------------------------LVTVSDEAGQARWVADQVLAQREAGATL------- 386

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              K    L R    +  +            I  V        +   IKD+++L R+  +
Sbjct: 387 ---KSQAALFRASHHSAALELEL----TRRNIPFVKFGGLRFLEAAHIKDVLSLLRWAEN 439

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK--FQHVIKYI 488
               L+        L         ++     +       ++ F     +K  ++   +  
Sbjct: 440 PRGRLAGFRA-AQLLPGIGPAIAGRLMDALADAPEPLAALRDFKPGAAAKADWEAFAQTY 498

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L   A          L L     + + +          LD+               L 
Sbjct: 499 AALR--APGLQWPADLDLALRWYAPQLERLYDDARVRKADLDQLARIAAGYASRE-RFLT 555

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           EL  +              + + + + T+H+AKG E   V++++                
Sbjct: 556 ELTLDPPDATSAESGPPLRDEDYMILSTIHSAKGQEWKAVYVLNVVDGCIPSDMSTGT-- 613

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL-IICKH 667
                                               EE  RLLYV MTRA + L ++   
Sbjct: 614 --------------------------------AEEIEEERRLLYVAMTRAKESLQLVVPQ 641

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
               +++              F  D  V   ++  +  +                 + +
Sbjct: 642 RFYVHQQTGLGDRHVYGSRTRFIPDALVPLFEMLPAPPELPHGRGRPPAESAPRIDVAQ 700


>gi|256825720|ref|YP_003149680.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689113|gb|ACV06915.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547]
          Length = 704

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 104/772 (13%), Positives = 210/772 (27%), Gaps = 194/772 (25%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL---------- 127
             P + I ++         + +L+  +     +       K+   T A+           
Sbjct: 106 GAPPQIIASKAPLVAEAASRLRLEVDRAAIRDLAAEVEWAKVSLLTPATYPAEARRLARA 165

Query: 128 ------TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                 +    L   Y E      V+DFED++++   +L+       +   I  +  H +
Sbjct: 166 AGGLDPSAMARLLEVYGEVASDRGVMDFEDVLLSMLAILRD---RPDVARTIRSQYRHFV 222

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD + +Q  ++ +   +             +  VGD  Q+IY+F GA P+ +L   
Sbjct: 223 VDEYQDVNAVQQALLEAWMGE----------RHDVCVVGDAAQTIYTFTGASPRHLLEF- 271

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                   +   + + + L  ++RST  IL V + V +    A G               
Sbjct: 272 -------PSRHPQTTSVVLHRNYRSTPQILQVANAVIAADPQAAG--------------- 309

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
               G V+L  Q     + +              L         AR +A  I  +   + 
Sbjct: 310 ----GRVELHSQRPLGPEPE--------------LSVHDDDEAEARWVADRIGQLTAQE- 350

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                    +   D+ VL R    +  I            +  +            ++  
Sbjct: 351 --------DVTPGDVAVLFRTNGQSEAIETAL----ARAGVPYLVRGGERFFARQEVRAG 398

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           + L R  +  +D          PL   + D +           +     +++        
Sbjct: 399 IVLLRGAVRSDDGEV-------PLVRLTTDVLSGAGWTHEPPASSGAQRERW-----ESL 446

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           Q ++    +L  +       D    +                                  
Sbjct: 447 QALVSVAEDLAAVNPDARMGDLVAEL---------------------------------- 472

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                                  H+   + V + ++H AKGLE PVVF+V     +    
Sbjct: 473 ----------------DRRSAEQHAPAMDGVTLASLHAAKGLEWPVVFIVGCSEGLMP-- 514

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                            +          E  RL YVG+TRA D+
Sbjct: 515 ---------------------------------ISLARTPEAVAEERRLAYVGITRAEDR 541

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L + +    +  +   + + +     S    E V + + T    K               
Sbjct: 542 LFLTRARGRAGARSEREPSRFLAGAASVLGQEAVSEKRPTGPGKKRSRRRPAVCRQCGTP 601

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
                +  + +  D          P   D+     L         K +  + +  N    
Sbjct: 602 LENATQAKVGRCAD---------CPPDYDVETFEALKAWRKALALKLSKPAFVIFNDATL 652

Query: 782 RGLII---HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
            G+     H + + +  +    R   +  +     ++    + + +      
Sbjct: 653 EGIATADPHAV-EDLAGVSGVGR-AKLERFGPDVIRVLGGADPQEVAEKFEA 702


>gi|170078704|ref|YP_001735342.1| UvrD/REP helicase domain-containing protein [Synechococcus sp. PCC
           7002]
 gi|169886373|gb|ACB00087.1| UvrD/REP helicase domain protein [Synechococcus sp. PCC 7002]
          Length = 749

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/575 (15%), Positives = 181/575 (31%), Gaps = 73/575 (12%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L +A  +  +Y++  ++N VLD++DL++    +L++ +    ++     +I  I  DE Q
Sbjct: 215 LAIAAGIYQNYQQLLQENNVLDYDDLVLGAIRVLQQPE----LQQYWQGQIYGIFEDEAQ 270

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQ 245
           D+S +Q ++IR L      G+        L  VGD  Q+I S F  A+P    R  +   
Sbjct: 271 DSSPLQEQLIRLLATAPESGE------CNLVRVGDPNQAINSTFTPADPFYFNRFCQAVD 324

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
               +              RS+  I+T  +++     +               + R    
Sbjct: 325 CAEIHYAG-----------RSSLPIITAANQMLHWASHTLS-------PPDRFAFRWQ-- 364

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              +++           NP                +     +++   +  ++  +   S 
Sbjct: 365 ---EIFPVPNHDPQQNANPDPTGAGVERHYPQDIYATV---QQLGDRLETLLTENPDHSA 418

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                       +LVRK++    +T   R       I +    R     +  + +L  + 
Sbjct: 419 -----------AILVRKQRQAKFVTEQLRARFQPTTIRLYDA-RSGNDANHLVLELYQIL 466

Query: 426 RFILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           RF+            L            D+ ++ T   +           ++      Q 
Sbjct: 467 RFLERPHSPDCLKGALDVLGDRQKIPTQDLARLATYPEKFLYPGPLDPALSSGPAQATQT 526

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +   + +            F  + L         + +        L E +    + ++N 
Sbjct: 527 LCVQLLQARWQLPHYQLLPFLAMTLDYSDVELATVQK--------LAERIAQQTQGQKNL 578

Query: 544 YSSLQELISELEQYPPTIKRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             SL+     L      I+    A      ++ ++T+H AKGL+   VF+          
Sbjct: 579 RQSLEVFEMLLRDGFEGIELDTDARYTRPQQITVITMHKAKGLDWDYVFIPFLHDSEIPG 638

Query: 601 KHIKKMHIMPSLNDDPGIPIWI-----------PQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                       + +                   +S +    ++ L +  ++   EE  R
Sbjct: 639 MSWVPSGAQFLGDYNLAQVARAQIRHFVHGQDQGRSPTAPATITTLWQEAQQLKTEEEYR 698

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
           LLYV MTRA   L +           + +     +
Sbjct: 699 LLYVAMTRAKRLLWLSAAKQAPFSWSTFKPHQSSL 733


>gi|326334225|ref|ZP_08200448.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1]
 gi|325948016|gb|EGD40133.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1]
          Length = 854

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 100/802 (12%), Positives = 223/802 (27%), Gaps = 97/802 (12%)

Query: 8   SLNESYELIYKDLWP-LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           +  +  + +   L   L     S  + +    +    P  L  A            +   
Sbjct: 75  AAEQLRDRVTARLGRTLSGAVSSTFHSFAYGLVRRYAPAELYAAPLT--LLSAPEADVVL 132

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
             L +        P++  +       + +++  + ++++    +          +  +  
Sbjct: 133 QELLADNPESVRWPERFRMAVGTRGFAREVQTVIARARER--GLDPDQLVALGREEGIEE 190

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
              A +    Y +       +D+ DLI+           +     ++  E   + +DE Q
Sbjct: 191 FVAAGWFLEQYLDVLGAQSAIDYPDLIMRGVI------EAERHAAELRAEFACVFVDEYQ 244

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT   Q  ++++L  D           R L  VGD  QSIY F GA+   +L        
Sbjct: 245 DTDPSQVALLQALAGD----------GRDLIVVGDPDQSIYGFRGADVNGILDFPSQFLT 294

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           R     +   ++ L  + R  + +L     + +       +   +  T R+        G
Sbjct: 295 R---ERRHAPVVALGTTRRFGSRLLRASRSIAAGISVRGSIPASAYDTFRNPHPLASDPG 351

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             ++      + +++            D L     A             ++ +       
Sbjct: 352 RAEVLTFDTDRAETEHIADLLRRAHLEDGLDWSDMAV------------LVRSGRTSIPQ 399

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH----------- 415
            +R + A  + V V   +   +       L +   + V  +    L +            
Sbjct: 400 LRRSLTAAGVPVEVASDETPLVREPAAAVLLDALGVVVDADVESDLDERYVRPERCEELL 459

Query: 416 ------LAIKDLMALGRFILSQEDDLSFV----CMLKSPLFNFSEDDIFKICTQRHETET 465
                 L   D+ AL R + ++  D++        +  P F            + +  E+
Sbjct: 460 TGPLGGLDATDVRALIRTLRARFPDVAAHDLVRRAVLDPSFAAGRAASASERVETNTVES 519

Query: 466 ---------------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                           +E        G      V +    L               +L  
Sbjct: 520 SADGDRVGLDTDSLVPHESGSTSRAGGERVLGRVRRLAALLAEARAALKDGAGAEQVLWT 579

Query: 511 KKGRQQFISRFGNEVI-------------DVLDEFLNFTLRNE-QNSYSSLQELISELEQ 556
                ++  R   +V              D +    +   + E +  ++S++  ++ L  
Sbjct: 580 LWDGAEWGQRLRAQVESGGPAARLAHRDLDAVVALFDTAAKIEGRQEFTSVETFLATLRA 639

Query: 557 YP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                          + VR++T H +KGLE  +V +       +     +   + P    
Sbjct: 640 QEIPADTLADKGVRGSSVRLLTAHRSKGLEWGLVVVAHVQEGAWPDLRRRDSLLGPDR-I 698

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            P +P                    + +   E  RL YV  TRA  +L++    +  ++ 
Sbjct: 699 APALPDGRHGGLLPPLT--------RSAMLAEERRLFYVAATRARSRLVVTAVKSPDDDG 750

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
               R   ++        +     +   ++ +  W A              R     +  
Sbjct: 751 DQPSRFINELGLREDLIPDPGLAGRGGPALARPTWSAELRRHRGRPRLSPSRCVRPPRGG 810

Query: 735 DEQKIPKKLFSPIKNDINEPYI 756
                P +  +        P  
Sbjct: 811 CRSWPPPRCAASGSPSPRIPRP 832


>gi|322378864|ref|ZP_08053281.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
 gi|321148674|gb|EFX43157.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1]
          Length = 654

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 89/618 (14%), Positives = 182/618 (29%), Gaps = 168/618 (27%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
             K      A   L +     +E  K++   +D+ DL+I   + +K +  +         
Sbjct: 145 LLKRTPEQEAYTELYECALGLFESCKREQHYVDYNDLLILFKEQIKHQPKA--------- 195

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
               +L DE QDT+ +Q  ++ +L             P +LF VGD  QSIY+F+GA+  
Sbjct: 196 -FCEVLCDEYQDTNPLQDSILDAL------------QPSSLFCVGDYDQSIYAFNGADIS 242

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +    +          +   +  L  ++RS+  IL + ++V +        S +     
Sbjct: 243 IISNFTQ--------KHKNAQVFSLRKNYRSSGAILNLANRVIANNPRIYPKSLE----- 289

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                              V + ++   P+   +    D            + IA  I+ 
Sbjct: 290 -------------------VVKQNNPSTPKLLVYDELLDQY----------QGIAKQIA- 319

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                           + +++ +L R            R L     I  +      L D 
Sbjct: 320 -------------LRGRFEEVAILFRNNASAEGCEAALRLL----GIPSIRKGGVGLFDT 362

Query: 416 LAIKDLMALGRFILSQEDDLSFVCML------------------------KSPLFNFSED 451
             +K L+ +  F++  ++ ++ + +L                         S     + +
Sbjct: 363 KEVKLLLDVCAFLIQPKEMVATMQILGYGHGVGAKLCAELYQALQILGEGNSLKGLLTPN 422

Query: 452 DIFKICTQRHETETVYEYIQK-----------------FANCGISKFQHVIKYIHELIHI 494
                 + +     ++E                                 ++ ++ L   
Sbjct: 423 QKEPYPSIKRPQMGLFEGFMANTSPFDLRSDFKDHPLLSHPKIKPPIACFLEDLYILCKT 482

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD-----EFLNFTLRNEQNSYSSLQE 549
             F +       I+         + +   E     D           L   +     L +
Sbjct: 483 HSFKTSAQSLEHIM-QSAWFDNIMQKLARERSKNKDGSVDTNRYEQALEKIKRRGELLVQ 541

Query: 550 LIS---ELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           + S    L+ +   I        + + V ++TVH +KGLE   V+++D   + F +    
Sbjct: 542 MSSKYGHLKDFINEIGLDSQEMDSGSGVHLLTVHASKGLEFSEVYVIDLMQKRFPNT--- 598

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                              +    EE  RL YV +TRA D L +
Sbjct: 599 -------------------------------KLAKQNGGLEEERRLFYVAVTRAKDHLYL 627

Query: 665 CKHSNTSNEKKSNQRTWY 682
                   +    + + +
Sbjct: 628 SYAREDRRKNTRYEPSCF 645


>gi|290559701|gb|EFD93026.1| ATP-dependent DNA helicase [Candidatus Parvarchaeum acidophilus
           ARMAN-5]
          Length = 782

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 107/817 (13%), Positives = 237/817 (29%), Gaps = 168/817 (20%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                L    Y    + + +K      +D+ DL+     L++           + +   +
Sbjct: 44  RVDEILAFLDYFITAFRDYEKSKGDDKIDYNDLLSRF--LMEYDP--------LKKHYKY 93

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE+QD + ++  + R L                +F VGD KQSI+ F G   K  + 
Sbjct: 94  VLVDELQDLNEVEANIARLL-------------GDYMFLVGDRKQSIFGFQGGSLKNFIE 140

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            ++         G   S   L  ++RS   IL    + F                ++  +
Sbjct: 141 FEK-------MPGADISTKVL--NYRSYNSILNYSKQYFLKNT----KDPTYANELKDFT 187

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            ++G  G V                  +   +  +++  + +              ++  
Sbjct: 188 GKLGDGGEV-----------------IQIVGNNVNNIAVKHAI------------ELLSN 218

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                           + ++ R  +    I+ +         +         ++      
Sbjct: 219 GKK-------------VAIITRTNEQIVEISRMLDA----KNLRYATTASASVSKRAK-N 260

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            ++   + +    D+   +  L +P         F+I  +  + E  +E +++ A     
Sbjct: 261 AIIDYVKGLF-YRDERDVIKALFTPFSGIPLRKAFQIEEKYRKREITFEELKRLAKPFFE 319

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
             +              F       ++ L                V++ ++         
Sbjct: 320 NIEKAFDVYGL---NKIFNDVVLPISVSLDNDYYISAAA------VLENIN------DYF 364

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +     +L +L   L  Y        +       + TVH AKG E   V           
Sbjct: 365 QNTEIPNLDDLFVYL--YAAEDNYDSNNADENFILTTVHKAKGREFDNVIY-------LP 415

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +   K   +  + +                         K+   EE  R+ +V  TRA 
Sbjct: 416 KRQNNKTSFIDLVTNSIIKQTKNIDV--------------KEELSEESVRVDFVAFTRAK 461

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           + L I  + N + E        Y +        E V+      +   +E  +   + ++ 
Sbjct: 462 EGLYIVTNPNIAEE--------YYIEGFIDQRIEEVEDEPAPYTKRYEEAYSLFVNKNYE 513

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT------NLESL 773
           +   +  +++             L        N P  ++ S ID+          N+  +
Sbjct: 514 DAKKILNDDS----------NWLLDRIYNYFRNGPKTISFSLIDSVQNPVNFVKGNILGI 563

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
                +   G   H++ + +F                ++            +  I R + 
Sbjct: 564 REKTASIEFGSKAHRIAEEMFKKT-----------LNEDELNTNEIRILENIRKIVREIS 612

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI--SQQNIFIFEYKTHHHVPQ 891
                  +  +   E+ +       +++I I G+ID + +   +    I ++KT      
Sbjct: 613 EKYGAEQVDAEKSVELPLEAVFPGMEREIKIVGKIDAVFLNKEKNRFLIIDFKTDRS--- 669

Query: 892 EIEHIPYTHIAQLSIYEK--ILKDSYPNKSLVCLLIY 926
             E     H  QLS+Y +    +     K +   + Y
Sbjct: 670 --EEEGSKHRRQLSLYRRMLAAEKGVKEKDIDTAIAY 704


>gi|311111763|ref|YP_003982985.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
 gi|310943257|gb|ADP39551.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
          Length = 1172

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 120/1045 (11%), Positives = 266/1045 (25%), Gaps = 170/1045 (16%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS--------METGNPTILKKAQT 52
            +++     ++ S        W    F +        L         + +G    +   + 
Sbjct: 48   VRDELARRIDRSMSTAPTRAWAAYAFDLLRRAHVSGLLPGVEFAPKLLSGPEQDVMIGEI 107

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
            L    + +    R+               + + T+   ++  D  +++ +       +  
Sbjct: 108  LAGHREGKGAAVRWPA----------DLHEALGTRGFRQEIRDFFDRIAE-----YALTA 152

Query: 113  RFNTYKMFKSTLASLTLAKYLNAHYE--EAKKKNCVLDFEDLIINTND-LLKKRDVSAWI 169
                         +      L   Y+     +     D   LI      LL   +     
Sbjct: 153  EDLENLAQTLDRPAWHSVAQLYTEYQQIRRLRAPNAYDPAALIHEACAFLLANPE----Y 208

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTE-------------DFFVGKNTHSSPRTL 216
              +     + ILID+ Q+ S   + ++R L                    +   +    +
Sbjct: 209  LREERARFDLILIDDAQELSPSVYRLMRILVGREPGQVLATYTGDQREAVEAAFAPSARV 268

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
                  +  +  F GA P       +I  +            EL  S+   A I      
Sbjct: 269  LMTCCTETVVQGFRGARPDLAATLPQIFPE--------LQREELKTSYCMNAPITQAWRN 320

Query: 277  ------VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
                  V +     +      +        R+   G +          +        S  
Sbjct: 321  IARRLPVIANVPTPREPQAAPSKYEESALLRLSDDGDLLDPRHSDELPEGVFGYLLGSPQ 380

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
               + + Q      L R  AY  S +I          +RV+ A  I  +           
Sbjct: 381  DEANQVAQLLLEDYLYRGAAYARSAIIVRSGTEVARFRRVLAASGIPTVTGAALVPVRDE 440

Query: 391  FLTRFLKNDYKISVV----GNDRFILTDHLAIKDL-------MALGRFILSQEDDLSF-- 437
               R   +   + V       D   L DH              A+        DD +   
Sbjct: 441  PAVRPFLDALSLLVYARQQSADYLKLPDHNEFDGSLTENISPEAVTEAGTRSADDEAEKL 500

Query: 438  ------------------------VCMLKSPLFNFSEDDIFKICT-----------QRHE 462
                                    + +L S L   S  ++ ++              R  
Sbjct: 501  ARQSLADVLAEENRTNPGSGAHNAITLLTSRLGGASSMEVRRLRQQLRAAELRAGGHRCS 560

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC------SPHDFFTLILGAKKGRQQ 516
             + +   +              ++ +  ++            +       +  A    + 
Sbjct: 561  DDLLLGALLNPQALPAQGIGAAVRRVARVLAAGHKALSERGANAETVLWALWQASGLEKN 620

Query: 517  FISR------FGNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS 566
            +++               LD          R  +Q   SS +  +  ++     +    +
Sbjct: 621  WVTESAQTGPEAERAHRNLDAMIGLFEAATRFVDQMPGSSAELFLDYIDAQDLPMDTLAA 680

Query: 567  ANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 + V I+T   A G     V++       + +  ++   +      D         
Sbjct: 681  RGKRYDAVEILTPALAAGRHWQTVYVCGLQDGTWPNTTVRGSLLKAGELTD-------IC 733

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR----- 679
                       +    ++ + +  R+    ++RA+++L++   S+T +            
Sbjct: 734  DMGVAAAQQVRMSDRVRAVRHDELRMFSTAISRANERLVVTAVSSTEDAPSEFFDILVPD 793

Query: 680  -----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
                                ++   +   D          +       A        +  
Sbjct: 794  ARTAGITHVRRPMTLRALVAELRRYAQAQDTDPTLANAAAAQLNRLAQAGVPGAAPEQWW 853

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--- 779
             L    T +           L +   +       ++PS I+T  K+ L+  +S  +    
Sbjct: 854  GLLPLSTEQNAFTPHPHRDGLSTDSGDPEKLTVPVSPSRIETIHKSPLDWFVSAARAEAQ 913

Query: 780  ----FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
                 + G +IH + +          +  +    +  A L    E + +     ++++  
Sbjct: 914  TDTSRSLGTLIHAIAEEYPDADYMTLRGQLEERLSTLA-LPDTWEGQQIRERAEKMVDKL 972

Query: 836  M--MTTAMSCDSYSEVSVSGKINCPKKD----IIISGRIDQISI-SQQNIFIFEYKTHHH 888
               +   M  D    V V G              ISGR+D++         I + KT   
Sbjct: 973  AVYINEIMPGDHRELVGVEGSFRVLVPGDAVNAQISGRVDRLEKTEDGRYVIVDLKTGKT 1032

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKD 913
             P     I     AQL+ Y+  ++ 
Sbjct: 1033 KP-NKNQIAEH--AQLAAYQVAVEA 1054


>gi|148272380|ref|YP_001221941.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830310|emb|CAN01244.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 637

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 93/609 (15%), Positives = 177/609 (29%), Gaps = 152/609 (24%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL--AKYL 133
              + +  + T  +     D+  +++  +   I + +     +  ++    L    A  L
Sbjct: 162 AAESLRLRLDTAALR----DMAAEVEWRKVSMISVEEYGLAARTTRTLPPQLDADQAVAL 217

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K +   LDFED+++ T  +++      W+  ++ ++    ++DE QD S +Q 
Sbjct: 218 LQAYEDIKDQRRQLDFEDVLLATAGMIEAEP---WVAQQVREQYRFFVVDEYQDVSPLQQ 274

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            ++     D           R L  VGD  Q+IYSF GA+   +L               
Sbjct: 275 TILDLWMGD----------RRDLCVVGDASQTIYSFAGAKSAYLLDFASRFP-------- 316

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
           + +++ L  ++RST+ I    +++      A  L                  GT     +
Sbjct: 317 EATVVRLERNYRSTSGITEAANRLMRGRPGALTLVSADADP--------DGDGTGTASPR 368

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +  +      E + +    +    S    AR IA  I+  I +           I  
Sbjct: 369 AKGRGSAAVPGGGEGFRAP--QVSAFPSDGAEARAIAGAIAQQIASG----------IAP 416

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           +DI VL R    + ++         D  +S          D   IK  +   R       
Sbjct: 417 EDIAVLYRMNGQSAVLEQAL----GDAGVSYQVRGSQRFFDRPEIKQALLALRGASVSIS 472

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
                  +   L                                    +   + +  ++ 
Sbjct: 473 GEPLFKSVSDVLRGLGWSQ--------------------APPEQPGAVRDRWESLDAIMG 512

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
           +A+                         G+      DE L                    
Sbjct: 513 LAERMPA---------------------GSTFRAFTDELLER------------------ 533

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                      H    + V + T+H+AKGLE   V+L+     +                
Sbjct: 534 -------QAGQHEPTVSAVTLATLHSAKGLEWEHVYLMGLSEGLVP-------------- 572

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                +         +E  RLLYVG+TRA   L +    +  + 
Sbjct: 573 ---------------------ISYAQTLEAVDEERRLLYVGITRARSGLRLSWSRSGPHR 611

Query: 674 KKSNQRTWY 682
               + + +
Sbjct: 612 SGQREPSRF 620


>gi|254559023|ref|YP_003066118.1| ATP-dependent DNA helicase [Methylobacterium extorquens DM4]
 gi|254266301|emb|CAX22062.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens
           DM4]
          Length = 1139

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 102/738 (13%), Positives = 209/738 (28%), Gaps = 116/738 (15%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT---LQQAS 57
           L +R  LS  E+   ++   +      +  + ++         P ++ KA     L++  
Sbjct: 254 LMDRLALSHPEAAASVWIGTFHAFGLDI--VRRFHDRLGLPPGPRLVDKATAITMLEEVV 311

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
            T  ++    L              + I   I++   +L   +      + ++ +     
Sbjct: 312 PTLDLDHYRDLW-------DPEENLSEILAAISRAKDELVGPV-----RYAELAEDMKLK 359

Query: 118 KMFKSTLASLTLAKY---LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              ++++     A     + A YE     N  +DF DLI+    L+ +      +   + 
Sbjct: 360 ASDETSMLRARRAGEEALVYAAYERLLADNDAVDFGDLILKPVRLMAEHPE---VAKALA 416

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
               HIL+DE QD +     +I +L  D             L+ VGD +QSIY F GA  
Sbjct: 417 LRHRHILVDEYQDVNFATVRMIAALAAD---------RGERLWVVGDARQSIYRFRGATS 467

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +   K    K A           L +++RS  +I+       +     + L +     
Sbjct: 468 ASMTAFKEDYPKAADG--------ALTVNYRSRGEIIDTFTAFATSVAGFKPLGD----- 514

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           +  +  R        ++E      +        +                          
Sbjct: 515 LSLKPDRGTSGRRPAIYEAGTPDDEVALVAASVAEAEAA--------------------- 553

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                           +  ++  +L                      + V+      L +
Sbjct: 554 ---------------GVAYRNQAILCTANDRLAEFAEGLAA----RGVPVLYLG--PLFE 592

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              IKDL+ L           + V +   P      DD+  +        T        A
Sbjct: 593 RPEIKDLLCLLALFHDPRA-ATLVRVAILPEIGMGLDDVAVVAASLRHAATEPLAWLDDA 651

Query: 475 NCGISKFQHVIKYIHELIH-----IAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVI 526
               +        +  L +       +         L+L      ++             
Sbjct: 652 VSLEALSAGGRAALGRLRNACAGFERRAHPWTIASALVLDRLGIARRIGEATTLGDRMAG 711

Query: 527 DVLDEFLNFTLRNEQNSY-------SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
             + +FLNF                  ++ LI   E          +   + VR+MT+H 
Sbjct: 712 VAVWQFLNFLRSLPSEGEFPTYEASRQIRRLIRLKEDRSLRQFPDAALELDAVRLMTLHG 771

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE  +V      +     K        P         +   ++ +  +         
Sbjct: 772 SKGLEFELVHAPGLITTGLPRKAKPPDCPPPDGLIAGSEGMTGIEACTVGH--------- 822

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                E+   L +V ++RA D L + + +     KK +   +   +  +      + ++ 
Sbjct: 823 ----DEQEACLFFVLLSRARDDLRLYRSTLLKGGKKRSPSDYLKHIAGTLGPAPVLDRLP 878

Query: 700 LTNSINKDEWIAYEWSTH 717
                     ++  W   
Sbjct: 879 ELAGEPASAPVSVAWDVP 896


>gi|239982169|ref|ZP_04704693.1| putative ATP-dependent DNA helicase [Streptomyces albus J1074]
          Length = 708

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/548 (15%), Positives = 160/548 (29%), Gaps = 158/548 (28%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE+ K+   V+DFED+++ T  +L+       I   +  +  H ++DE QD S
Sbjct: 167 LAQIYARYEQLKRDRGVIDFEDVLLLTIGILQD---RRDIADHVRAQYQHFVVDEYQDVS 223

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             L  VGD  Q+IYSF GA P+ +L  +        
Sbjct: 224 PLQQRLLELWLGDRDS----------LCVVGDASQTIYSFTGATPEHLLNFR-------- 265

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               + ++++L   +RST  I+ + + + S           +   +   S R        
Sbjct: 266 VRHPEATVVKLVRDYRSTPQIVHLANGLLSQARGR-----AADHRLELVSQRDTGPEPQH 320

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                           +       A   A  I ++I            
Sbjct: 321 I---------------------------EYGDEPSEAEGTARRIRDLIAAG--------- 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            + A +I VL R    + L          D  +           +   +++  A  R   
Sbjct: 345 -VPAGEIAVLFRTNGQSGLYEQAL----TDAGVPYQLRGAERFFERREVREAQAALRGAA 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
               + + +             D+      +             A  G    +   + + 
Sbjct: 400 RFGGNDAAL-------------DLAHDLASQVRAVLSASGWSAQAPVGSGASRDRWESLA 446

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L  +A+                                                +SL +
Sbjct: 447 ALARLAEDFG----------------------------------------AAQPDASLAD 466

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            ++EL++   +           V + ++H AKGLE   VFLV     +            
Sbjct: 467 FVTELDERAASQHAPTVQG---VTLASLHAAKGLEWDAVFLVGLTEGMMP---------- 513

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                    +         EE  RLLYVG+TRA  +L +    +
Sbjct: 514 -------------------------ITYARTDEQLEEERRLLYVGITRARFRLTLSWSLS 548

Query: 670 TSNEKKSN 677
            +   +++
Sbjct: 549 RAPGGRAH 556


>gi|242280428|ref|YP_002992557.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
 gi|242123322|gb|ACS81018.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638]
          Length = 1034

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 100/653 (15%), Positives = 174/653 (26%), Gaps = 156/653 (23%)

Query: 20  LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
           +  + +           L++        +    ++       +  R   L +  L    +
Sbjct: 493 MGRIKHLLERGTRARRILALTFTRKAAEEMNDRMRSMLGDDEVLPRADTLHALALEYWAS 552

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
              +       + +  +  +     +         +     ++          + A+Y  
Sbjct: 553 AFDHDPIILNEETARRVFGRANPELNSAKLKSAWDSISLARETLETLSEGPAEILANYTR 612

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K +  ++D+ DL+      LK          K  +   H+L+DEVQD S +Q  +++ L
Sbjct: 613 QKDQYNLVDYTDLLEFWLSELKSD--------KYVRTFTHVLVDEVQDLSPLQLAIVQRL 664

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             D   G         LFA+GD  QSIY F GA      R +   +            I 
Sbjct: 665 VGDDGEG---------LFAIGDPDQSIYGFRGAAGNVANRFRAFWENLI--------KIT 707

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS   +L     V   P   +             +   G                
Sbjct: 708 LEDNYRSAQGVLDASASVLENPPQLKAHKNYEADIHLFSAPDSG---------------- 751

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG--TDTIFSNGKKRVIQAKDIL 377
                                     A  I   I  +IG  + ++   G+   +   DI 
Sbjct: 752 ------------------------REASWIGERIKQLIGATSHSLVDAGEHGTLSPGDIA 787

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           VLVR +     I  + +       I     +         ++ L+A  R +         
Sbjct: 788 VLVRFKALIGPIEAMLK----RQGIPCSVPETESFWHDPRVEVLLAAARRM--------- 834

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
                             +       + V E  +K    G       +  +     +   
Sbjct: 835 ------------------LGFAEDADDEVPEVPEKVIARGPLGLSAYLSDMPPFDQLFWE 876

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
             P            G    ++    +    LD+  N                       
Sbjct: 877 SKPFRDMVKGYKEHGGWSGLLNWIHMQN--DLDQVRNKA--------------------- 913

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                        +VRIM++H AKGLE   VFL      +        +       D P 
Sbjct: 914 ------------EKVRIMSMHAAKGLEFEAVFLAGLDDGIVPFA-GPDILTGKISGDAPL 960

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           +                      +   EE  RLLYVGMTRA   L +      
Sbjct: 961 V----------------------QENTEEERRLLYVGMTRAKKNLYMSHAVKR 991


>gi|302845565|ref|XP_002954321.1| hypothetical protein VOLCADRAFT_95122 [Volvox carteri f.
           nagariensis]
 gi|300260526|gb|EFJ44745.1| hypothetical protein VOLCADRAFT_95122 [Volvox carteri f.
           nagariensis]
          Length = 509

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 109/328 (33%), Gaps = 45/328 (13%)

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
              ++N  +DF DLI     LL+   V   +R       +HI++DE QD    Q++ +R 
Sbjct: 23  RHLRRNNAVDFADLICLPVRLLR---VDQQLRNSWRASFDHIIVDEFQDADPAQYQFVRL 79

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L               +LF VGD  Q+IY + GAE       ++   +       + +  
Sbjct: 80  LLA----------RSSSLFVVGDPSQAIYGWRGAEVNN---MRKHLVQDFP----RIATF 122

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            LP+++RS  +I+ + D +       +    D     + + +    V       Q     
Sbjct: 123 HLPVNYRSVPEIIELADAI-------RNCGGDKDELYKAQVAARRPVAAAAAAAQRPKWA 175

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                 +   + S            + A  IA  ISN +              +  DI V
Sbjct: 176 RGDFPVKLSMYMSP----------ELEAEEIAKQISNCVRAGQRSGGDGN---ELGDIAV 222

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED-DLSF 437
           L R+R  +               +           ++  I D +A    IL+    D+  
Sbjct: 223 LYRRRSQSRPFEEEL----TRRGVKYTVVGGQPFWEYKEIADAVAYLHLILAPTQSDVFL 278

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETET 465
             ++ +P        + ++      +  
Sbjct: 279 ERVINTPKRGLGPRTVKQLQLAARTSGM 306


>gi|254384600|ref|ZP_04999939.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
 gi|194343484|gb|EDX24450.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
          Length = 764

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 84/590 (14%), Positives = 156/590 (26%), Gaps = 160/590 (27%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              K  + T   L     +   YE+ K+   ++DFED+++ T  +L+       I  +I 
Sbjct: 212 AALKAGRETPRDLAETAQIYGTYEQLKRDRGMIDFEDVLLLTVGILQD---RRDIAEQIR 268

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +  H ++DE QD S +Q  ++     D             L  VGD  Q+IYSF GA P
Sbjct: 269 TQYQHFVVDEYQDVSPLQQRLLELWLGDRDS----------LCVVGDASQTIYSFTGATP 318

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L  +    +         ++++L   +RST  ++ + + + +  +        +   
Sbjct: 319 DHLLSFRTRYPQ--------ATVVKLIRDYRSTPQVVHLANGLLNQAKGR-----AAEHR 365

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           +   S R      V                             +       A  +A  I 
Sbjct: 366 LELVSQREPGPAPV---------------------------YAEYPDEPAEAEGVAGRIR 398

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           ++I             + A +I VL R    + +          D  +           +
Sbjct: 399 DLIAAG----------VPAGEIAVLYRINAQSEVYEQAL----ADAGVPYQLRGAERFFE 444

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              ++  +   R                        D +     +             ++
Sbjct: 445 RAEVQKGLLALRGAARSA--------------GSGNDPLLDGVVELGSQVRAVLSSTGWS 490

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
               +    V      L  + +                                      
Sbjct: 491 TEPPAGSGAVRDQWESLAALVR-------------------------------------- 512

Query: 535 FTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 +    ++L +L  ELE+               V + ++H AKGLE   VFLV  
Sbjct: 513 LAEDFARARPGATLADLTIELEERKAAQHAPTVQG---VTLASLHAAKGLEWDAVFLVGL 569

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +                                     +         EE  RLLYV
Sbjct: 570 TDGMMP-----------------------------------ITYAKTDEQVEEERRLLYV 594

Query: 654 GMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           G+TRA   L +                  + + +          +     
Sbjct: 595 GVTRARLHLTLSWGLSRAPGGRASRRPSRFLNGLRPGSAAPGAREGAAAE 644


>gi|229097023|ref|ZP_04227991.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
 gi|228686419|gb|EEL40329.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
          Length = 825

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 109/619 (17%), Positives = 199/619 (32%), Gaps = 77/619 (12%)

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
           +   QK   T +I +   DL     +       +                 T+   +   
Sbjct: 248 EKFEQKGFSTAKIIE-CTDLFGAASEENKRMNDLLQ---------------TIIPAVEKR 291

Query: 137 YEEAKKKNCVL---DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
           + + K+    +   DF   I          +    +   I + I  + IDE QD+  IQ 
Sbjct: 292 FSQEKRLLNAVTISDFTRQIDQVRK-----EHGTRVFQNISKPIRFLFIDEFQDSDDIQI 346

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +I ++ E F           TLF VGD KQSIY F GA        K+  Q+R  +   
Sbjct: 347 RLIATIQEAFES---------TLFVVGDIKQSIYRFRGANHTAFSILKKQLQERNIDMEN 397

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              +  L  ++R+T ++L  +D+ FS     Q L   + T+  +     G          
Sbjct: 398 --QVYYLVKNYRTTRNLLDKMDEYFSSWGEKQFLQYAADTSDNNTDRLQGMRSVDDERPL 455

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           V+     +     ++                    I      +   +   +N +    + 
Sbjct: 456 VIDAKREENKEDMKTHIMP---------------YIQERYRQIKEINEEKTNKENVTEEK 500

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           + + VL R   +  LI    + +     +              AI+D  +L  F+L   +
Sbjct: 501 EKLAVLTRTIDEARLIHTWCKEM----NMPSKLEVGGNFFISKAIRDFYSLTLFLLYPTN 556

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK---YIHE 490
                 +L  P        + K+         +   I++ +N     + + +K    +  
Sbjct: 557 KKYLANVLNGPYGQNDSYLLHKLLASNGNNIGINRLIREASNVDFQDYINKLKYHPVLSV 616

Query: 491 LIHIAQFCSPH--------DFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFTLRN 539
           L  I Q  +P+        D     L +    +Q       +  +    + +      + 
Sbjct: 617 LRSIIQEVNPYHWVYSRKLDELKEKLTSGFDEEQLKQEAAIYTKQYELNIGKLFEMMHQR 676

Query: 540 EQNSYSSLQELISEL-------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
               + SL ++ + L        +      +      + V I+TVH AKGLE   V +  
Sbjct: 677 FSEEFVSLHQITNWLYIQIATNREEDEIQVQDIEKGLDYVHILTVHRAKGLEYHTVIIPF 736

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
           T  Q        K+                     +N     L +   +   +E  RLLY
Sbjct: 737 TERQF--TTSFSKIIFDEQKEKIGWFIRKPGFVPKQNEYYKTLNQEEDEEAIKEETRLLY 794

Query: 653 VGMTRASDQLIICKHSNTS 671
           V MTRA + L+I ++    
Sbjct: 795 VAMTRAKNHLVIIRNRKNE 813


>gi|311111762|ref|YP_003982984.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
 gi|310943256|gb|ADP39550.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931]
          Length = 1449

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 96/776 (12%), Positives = 212/776 (27%), Gaps = 106/776 (13%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
           R G+  +          W L    V   +  +                    A+ +    
Sbjct: 161 RLGVEQDAQMLG-DAQAWQLAAQIVQYWDGDLP-------------------AASSALGV 200

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              S +    L       +++++    ++  +       + +         N  K+ +  
Sbjct: 201 ASKSTIVQSLLQLSGECAEHLVSP---QQVIEFCSAHLAAYESLSSPGPSANAKKVIERL 257

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A + LA+ L   Y   K +  VLD+ DLI     + ++   +A +     +    +L+D
Sbjct: 258 KAKIILAQ-LVQRYARVKARMQVLDYGDLIALAARIAREVPAAAQL---ERERYKVVLLD 313

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           E QDTS  Q  +   L                 + AVGD KQSIY F GA   ++    +
Sbjct: 314 EFQDTSHAQLRLFADLYGAGDGHDGRPGQPEHPVMAVGDPKQSIYGFRGASDGQLFSFYQ 373

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
               R        + + L +++R+   IL   + +                 +++    +
Sbjct: 374 YFPTR------DETPLYLTVAWRNDVAILDAANLI--------------AAKLKNIPDWV 413

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  + +          +            L +  S +  A+ IA  I         
Sbjct: 414 RAPAPPHVPDLRPRSVVLNPDESGYRAMLGSVQLARYGSETEEAQGIAERIVQERARYAN 473

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    Q   + VL R R          R       + V       L +   I D++
Sbjct: 474 TPE------QMPTMAVLTRTRAQM----EPIRQACESLGVPVQVVGLGGLLERPEIIDMV 523

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------------ETE 464
           ++ R +       + + +L    +     D+  +    +                    E
Sbjct: 524 SMLRVLADPNRSDALMRLLAGARWRLGTADLLALGDWSNYLTTTREKNMGRTFGEQSSGE 583

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELI-----HIAQFCSPHDFFTLILGAKKG------ 513
           T  +          +  +   +    +       +A++ S  +    +  A +       
Sbjct: 584 TSGDVPSSPQTDTDANLRAAHEEFERVRKNAVEDLAEYGSLIEAIEHLPAADEAGNPIYP 643

Query: 514 --RQQFISRFGNEVIDVLDEF---LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
               +   R   E +  L  F   + +  +       +L   I  +      +      +
Sbjct: 644 ADYPESRRRLSVEGLRRLHAFTAEVEYLRQFTTEDIGTLLYEIERVMLLDIELAARPGGD 703

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
               R      A       V      S    +  +        +++D         S + 
Sbjct: 704 AYGSR------AHLDAFHEVAASYAASSPRINAMLYAGADGTEVDEDAPTARRFVLSANG 757

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            + +   +  L+++   E       G+T A ++         +          +  +   
Sbjct: 758 ISYLLGFLSWLEQAQNHER------GLTPAEEEPRRDAVQILTMHASKGLEWDHVYLPRM 811

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                        + +                 + LER E +  L + +++  +L 
Sbjct: 812 CDKYPTRPH--TWHRLEHGSLPWPLRGDRDYLPSALERAEEVSALENYKELNARLE 865



 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 75/291 (25%), Gaps = 43/291 (14%)

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
               S +  + +    D++        RV++  L  +         +  T   E    + +
Sbjct: 1146 RWASEKDLAERTENRDIIAVPGQRRARVERTALNVARGSLSLDELDKLTSPTEAEAQQIQ 1205

Query: 728  ETIKQ------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
            +   +      L      P     P     +    L+        +      +  +    
Sbjct: 1206 DWEHEVDLLLALAQRAVTPAVPTKPEHMSASTLIALSEDKETVLSRLVRPVPMQPSAAAR 1265

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK---NLLLSITRLLENPMMT 838
            +G + H  ++  F                   +L+   +     +L       LE+   +
Sbjct: 1266 QGTLFHAWVEEYFGDEP---------MLDIQDELYSDDDLDGSFDLDKLRATFLESEWAS 1316

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-------------SQQNIFIFEYKT 885
              +     +E  V   +      + I GRID +                Q++  + ++KT
Sbjct: 1317 RTI---WRAEYPVETHVA----GVNIRGRIDAVFRRTEQVTNADGTLQEQEHWDLVDWKT 1369

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFI 934
                             QL++Y              +     YV   +   
Sbjct: 1370 GRKPSAHAMRHK---RIQLALYRLAFAKIQGIDPECVHAAFYYVGSDQTVW 1417


>gi|91202090|emb|CAJ75150.1| similar to DNA helicase [Candidatus Kuenenia stuttgartiensis]
          Length = 641

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 109/693 (15%), Positives = 198/693 (28%), Gaps = 140/693 (20%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
                             +  + + L     ++     F   ++  L Q           
Sbjct: 49  GQHFRILALTFTNKAAAEVRGRVEKLVPGELSRVRLTTFHSYAAELLQQHGNHLSFRPDF 108

Query: 88  EINKKSPDLKEKLKKSQDEFI-----KIRDRFNTYKMFKSTLASLTL------------- 129
           +I     D +  L              + D F   ++  +    L               
Sbjct: 109 QILSNDADREALLDDVLGRLRKDMAYSLPDHFKAAQLLPAVTRLLEQCIPPDQAAVVLQQ 168

Query: 130 --------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                      + A Y EA      LDF  LI  + DLL K     ++   I +   HIL
Sbjct: 169 ANVENAIPLARVYAAYREALHLTNSLDFPSLIAESLDLLDKYP---FLVKHIRKVYKHIL 225

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDT+  Q+ ++  + +           P TLF V D+ Q IY ++GA P+R+   +
Sbjct: 226 IDEFQDTNHSQYRILSLIAQ---------PDPSTLFVVADDDQIIYQWNGASPERIKALR 276

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         S ++LP ++R    ++ + + +     N       S      ++ +
Sbjct: 277 DDFG---------VSELQLPENYRCPPLVIELANALIEKNLNR------SAGKKPLKAVK 321

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            G+ G V    +                                A  IA  I+       
Sbjct: 322 QGEGGDVVRVFRFDDVDG-------------------------EAEWIAQDIA------- 349

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                KK      D  VL R +K   L             + V    R        ++ L
Sbjct: 350 -----KKTPQLRTDCAVLARTKKLLDLAGRKLE----GAGVPVYYAARKDEFKSAPLRML 400

Query: 422 MALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            A+ R + S ED  S   +      L   S +    +     + + +            +
Sbjct: 401 HAILRLVNSTEDKQSLARLSKAFYELEGISIELAPVLSRASADGKDLLRCWLDEVKRRDA 460

Query: 480 KFQHVIK--------YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
             +  ++         ++ L +         +        +  +   + F  E  +V   
Sbjct: 461 LEEETLRLLETGIKPLLNSLNYRDFADKLLKWAEACQQTSRPDENAFNEFDEER-EVWKL 519

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            L    +       SL +L+ EL+    T+ +        V   T+H +KG+E   V+L+
Sbjct: 520 LLAEITKKFDGEDVSLHQLLHELDLTSKTLPKPPE----AVPCFTIHASKGMEFGQVYLM 575

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                                                    + + K       +E  R  
Sbjct: 576 GLVEDQLPS-------------------------------WAAVKKGDNSLEMQEERRNC 604

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
           +V +TRA + L +   +      K   R   +M
Sbjct: 605 FVAITRAQESLTLTFSAQVFGWPKQPSRFLSEM 637


>gi|57505386|ref|ZP_00371314.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter upsaliensis RM3195]
 gi|57016211|gb|EAL52997.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter upsaliensis RM3195]
          Length = 673

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 92/616 (14%), Positives = 186/616 (30%), Gaps = 182/616 (29%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   +DF D                 +      E + IL+DE QD
Sbjct: 168 EIYEDILKEYDAEKKRFNYVDFND----------LLLNLKELLKTQKHEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNSLQSSLIEAF------------ESKSLFCVGDYDQSIYAFNGADINIIGGFKERF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----LDAQIFSLNKNYRSSKSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V++ D    P    +   F                   I+ MI          
Sbjct: 298 ----ELIVTRQDEFKAPSLLIFDELFSQ--------------YQNIAKMI---------Y 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       +    R       I+          + L +K   A+   
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGMEVALRE----RGIASARKGSGSFFESLEVKAFCAMLAL 386

Query: 428 ILSQEDDLSFVCMLKS--------------PLFNFSEDDIFKICTQRHETETVYEYIQK- 472
           I++ +D ++F+ +++                L    + ++ K   +  ++ ++  Y ++ 
Sbjct: 387 IVNPKDIMAFIHLIQYTKGVGGVLAKDIFDALLKLGDGNLIKGFLEPDKSVSLKNYQKRN 446

Query: 473 ----------------------------------FANCGISKFQHVIKYIHELIHIAQFC 498
                                                      + +  ++ E+       
Sbjct: 447 YELGLFADLDDLANEKRFDFTSEFYAHPILKLSKINENCAKNLEKLYFFLKEVERKRHSL 506

Query: 499 SPH------DFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNF--TLRNEQNSYSS 546
                    +FF  I       ++  +R G        + L +       L+    +Y  
Sbjct: 507 EVLNCIFNNEFFKEICEEL-ATKRATNRAGQVDLLRKNENLQKIEAKFGILKEFAKNYGD 565

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           + +  + L      +     ++   V +++VH +KGLE  +VF++D     F ++     
Sbjct: 566 IYKYYNFLTLGSSEM-----SSGKGVNLLSVHASKGLEFELVFVIDLAQNRFPNQ----- 615

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                               + EE  RL YV +TRA + L +  
Sbjct: 616 -----------------------------KLMAMGGSLEEERRLFYVAVTRAKNILYLSY 646

Query: 667 HSNTSNEKKSNQRTWY 682
                ++K   + + +
Sbjct: 647 AKYDKDKKTHYKPSCF 662


>gi|325263244|ref|ZP_08129979.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium sp. D5]
 gi|324031637|gb|EGB92917.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium sp. D5]
          Length = 1090

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 100/668 (14%), Positives = 196/668 (29%), Gaps = 155/668 (23%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +  E  E I K++          +  + ++ +       ++ +     A+  +       
Sbjct: 542  AAGELMERIKKEIGRSRNLNKMQVGTFHAICLNFLKNQGVEFSLA-DDAASLEAAGRALD 600

Query: 68   LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                     K  P++ +    + K   D             +++ R       +      
Sbjct: 601  E-----TGLKMKPKELLRVASLLKSGMDP-----------EEMQTRMAQNDADEEAQEMP 644

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                     Y+   ++  +LDF+DL++ T  L+++      ++   ++   ++L+DE QD
Sbjct: 645  QNWNEGAKAYQRILREQHLLDFDDLLLETLKLIEQ----GSVQDGWEKRFAYLLVDEFQD 700

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
             S IQ+ +I++ +             R LF +GD  QSIY F G++ +   + K      
Sbjct: 701  ISPIQYRLIQAWSR----------GGRELFVIGDPDQSIYGFRGSDARCFEKLKEDYP-- 748

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                      I L  ++R    +L     V S  +  +                      
Sbjct: 749  ------DMQEIRLAWNYRCAPAVLHAAASVISHNQGPERK-------------------- 782

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                  +  + +        + +   +++      + LA  I    +  IG         
Sbjct: 783  -----LLAHRQEEMPVRVVRAGSEMAEAIFTAKEINRLAGGIGMLEAQKIGAG------S 831

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             +V    DI VL R  +   L+    R       I  V   R        ++  ++  + 
Sbjct: 832  GKVRSFGDIAVLYRTHRQADLLEKCLR----KEGIPYVTTGREAFLTEYEVRGSISFFKC 887

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
            + +  D+ S    LK                       +++         +         
Sbjct: 888  LANPADEFSRKICLK----------------------LLWDLDTNVVAESV-----FESM 920

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
              +   +     P  F    +   + ++    +                L      Y S+
Sbjct: 921  AEKFRPLYAKSKPQKFLEKWIEEMQMQESTAMKK---------------LAGMTLFYRSM 965

Query: 548  QELISELEQY---PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             E +  L                N   V +MT+H AKGLE PV F+      +       
Sbjct: 966  DEFMEALSLGVESDLRRCGDRRYNGEAVTLMTLHGAKGLEFPVTFIYGVRKGLIPF---- 1021

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                            +  +    EE  RL YVGMTRA D+LI+
Sbjct: 1022 --------------------------------EKYETVDLEEERRLFYVGMTRAKDELIL 1049

Query: 665  CKHSNTSN 672
                + S 
Sbjct: 1050 TTSQDESE 1057


>gi|239929054|ref|ZP_04686007.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291437391|ref|ZP_06576781.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340286|gb|EFE67242.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 735

 Score =  165 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/601 (14%), Positives = 162/601 (26%), Gaps = 162/601 (26%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L + YE+ K++  V+DFED+++ T  +L+       +  ++  +  H ++DE QD S 
Sbjct: 187 AQLYSAYEDLKRERAVIDFEDVLLLTVAVLQD---RPDVAEQVRAQYQHFVVDEYQDVSP 243

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++     D             L  VGD  Q+IYSF GA P  +L  +         
Sbjct: 244 LQQRLLELWLGD----------RENLCVVGDASQTIYSFTGATPDHLLDFRTR------- 286

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++++L   +RST  ++ + + + +           +   +   S R      V  
Sbjct: 287 -HPGATVVKLVRDYRSTPQVVRLANGLLAQARGR-----AADHRLELVSQRAAGPEPV-- 338

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                      + +     A   A  I  +I +           
Sbjct: 339 -------------------------FTEYTDEPAEAEGAARRIRELIDSG---------- 363

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           + A +I VL R    +            D  +           D   ++      R    
Sbjct: 364 VPASEIAVLFRTNSQSETYEQAL----ADAGVPYQLRGAERFFDRPEVRKAGIALRGAAR 419

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              + + +             D       +       E        G    +   + +  
Sbjct: 420 FGGNDALL-------------DDAPDLPSQVRAVLSGEGWTPQPPAGSGAVRERWESLAA 466

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQE 549
           L                                         +N           ++L +
Sbjct: 467 L-----------------------------------------VNLAQDFAAARPGATLAD 485

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L++EL++               V + ++H+AKGLE  VVFLV     +            
Sbjct: 486 LVAELDERAGAQHAPTVQG---VTLASLHSAKGLEWDVVFLVGVAEGMMP---------- 532

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-- 667
                                    +         EE  RLLYVG+TRA ++L +     
Sbjct: 533 -------------------------ITYAKTDEQVEEERRLLYVGVTRARERLHLSWALS 567

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
            +           + D +               T  + +    A                
Sbjct: 568 RSPGGRPNRRASRFLDGLRPGSGTAAGRGGAAGTGGVERGFSGAASVPAAPGRGRRQRSP 627

Query: 728 E 728
            
Sbjct: 628 A 628


>gi|289705131|ref|ZP_06501535.1| HRDC domain protein [Micrococcus luteus SK58]
 gi|289558159|gb|EFD51446.1| HRDC domain protein [Micrococcus luteus SK58]
          Length = 709

 Score =  165 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 97/711 (13%), Positives = 189/711 (26%), Gaps = 163/711 (22%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAHYEEAKKKNCVLD 148
                DL  +++ ++             K  +       T    L   YEEAK    ++D
Sbjct: 132 RAGLRDLAGEIEWAKVSLHAPEGYAEAAKEREMPAGWTATTVARLYTGYEEAKTARNMID 191

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           FED+++    +L        I   I  +    ++DE QD S +Q  ++     D      
Sbjct: 192 FEDVLLILVGILSTEP---QIAATIRDQYRVFVVDEYQDVSPLQHRLLDLWLGD------ 242

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                  L  VGD  Q+IYSF GA  + +   +              +++ L   +RS+ 
Sbjct: 243 ----RGDLCVVGDASQTIYSFTGATSRFLTDFRERYPA--------ATVVRLVRDYRSSP 290

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            I+   +++ +    A                   +  T+  W   +     +       
Sbjct: 291 QIVEAANRLLADRTKAGE-----------------RDRTMPRWPDPLELVSQRPAGPDLV 333

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
           +    D   +       A  +A  I+ +I             + A +I VL R    +  
Sbjct: 334 FAECTDDEAE-------AGWVADRIAALIDDG----------VPASEIAVLFRTNGQSQA 376

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                    +   I               ++D +   R       DL+   +        
Sbjct: 377 FETAL----SSAGIGYQLRGGERFFSRREVRDGILQLRAAARAAQDLTGDDV-------- 424

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                    T R                     +   + +H L+++A   +        L
Sbjct: 425 ---------TDRVRDVLSSLGYSAEPPSASGAARERWESLHALVNLADQLATTRGAEFTL 475

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                                                        + +     +  H+  
Sbjct: 476 TEL------------------------------------------VAELDERAQHQHAPT 493

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              + + ++H+AKGLE   VFLV     +                               
Sbjct: 494 VQGITLASLHSAKGLEWDAVFLVGLSEGLMP----------------------------- 524

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                 +     ++  +E  RLLYVG+TRA   L +    +     +S +R    +    
Sbjct: 525 ------ISFAETQAEVDEERRLLYVGITRARQHLSLTWTLSRGTGGRSTRRPSRFLWAID 578

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                  +      S           +      T  +  ET  +      + + L  P  
Sbjct: 579 PTLGGTREHAPARGSAAGPTAPRRRGAKVAVCRTCGKPLETGAERK----VGRCLDCPAT 634

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            D      L      T  +  + + +          ++  + + +   P  
Sbjct: 635 YDEAVLEELRDWRTRTAAEMRMPAFVVFTDA----TLV-AIAEAMPKTPAE 680


>gi|157736816|ref|YP_001489499.1| ATP-dependent DNA helicase UvrD [Arcobacter butzleri RM4018]
 gi|157698670|gb|ABV66830.1| ATP-dependent DNA helicase, UvrD/Rep family [Arcobacter butzleri
           RM4018]
          Length = 681

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 89/580 (15%), Positives = 180/580 (31%), Gaps = 108/580 (18%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + +   + E K K   ++F+DL+     +LK++D               IL+DE QDT
Sbjct: 170 IYEDVVDEFNELKTKYGYVNFDDLLTTMLKILKEKDFD----------FKEILVDEYQDT 219

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q  ++ S              P++LF VGD  QSIY+F+G++   +           
Sbjct: 220 NPLQGRLLDSF------------RPKSLFCVGDYDQSIYAFNGSDIGIISTFSTRY---- 263

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               +  ++  L  ++RST  IL +  KV    E       +     +    +   +   
Sbjct: 264 ----KDANVFTLRKNYRSTKPILDLATKVIEFNERVYEKKLEVVR--KEDIYKPKLLAFN 317

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L+ Q     +     Q              S+  I A    + I+        F +  +
Sbjct: 318 ELFSQYEYISELISKSQTPHSEIAIIYRNNSSADGIEANLREFGIAAKRKGGMSFFDSVE 377

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 DILV+     D      +      ++   +       + D L       + R +
Sbjct: 378 VKFIL-DILVMQVSHNDMMAFIHIV-----EHGKGIGKAIAKDIFDALIKLGDGDIIRGL 431

Query: 429 LSQEDDLS--FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---- 482
                D+S  +   +K+      +D I      + +     E           K      
Sbjct: 432 FQPRIDISNPYETKVKNQQLGLFDDFIELGSISKFKDCNFEETFLSNPILKHPKLSVDGG 491

Query: 483 ----HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE------- 531
                +   +  L       +     +  +   K +    ++   +    +++       
Sbjct: 492 KYLYDIYLLLKHLRRTKIPETLVASISSSMAYSKLKDFLATKRATQKDGTINDIQKTKAL 551

Query: 532 ---------FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
                      N          + L + I+ +      +     +    V ++++H +KG
Sbjct: 552 AKINRKAMLLKNLARNF-----NDLSKFINSMILGGSEM-----SEGEGVNLLSIHASKG 601

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   V+++D     F ++                                      K  
Sbjct: 602 LEFKEVYVIDLMDGRFPNR----------------------------------KLMSKGG 627

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
           + EE  RL YV +TRA D L +        +K +   + +
Sbjct: 628 SLEEERRLFYVAVTRAKDILYLSYAKYDKIKKMTFVASPF 667


>gi|297157447|gb|ADI07159.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
           BCW-1]
          Length = 763

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 98/658 (14%), Positives = 188/658 (28%), Gaps = 150/658 (22%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
             K  +           +   YE+ K++  V+DFED+++ T  +L++      I  ++ +
Sbjct: 181 AAKSGREAPRDAAEIARIYGMYEQLKRERGVIDFEDVLLLTVGVLQE---RHDIADQVRR 237

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           +  H ++DE QD S +Q  ++     D             L  VGD  Q+IYSF GA P 
Sbjct: 238 QYQHFVVDEYQDVSPLQQRLLELWLGDRES----------LCVVGDASQTIYSFTGATPD 287

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +L  +              ++++L   +RST  ++ + + V +           +   +
Sbjct: 288 HLLNFRTR--------HPGATVVKLVRDYRSTPQVVHLANGVLAQARGR-----AADHRL 334

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
              S R      V                    +T+Y D   +       A  +A  I  
Sbjct: 335 ELVSQREPGPDPV--------------------YTAYADEPAE-------AEGVARRIRE 367

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           +I        G    + A ++ +L R    + +          D ++           + 
Sbjct: 368 LITPVEQGGGG----VPASEVAILYRVNAQSEVYEQAL----ADAQVPYQLRGAERFFER 419

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
             +++   L R      +               ++ DI                      
Sbjct: 420 PEVREAGLLLRGAARAGNADP----------ALTDADIPSQVRA----VLGTRGWTPEPP 465

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
            G    +   + +  L+ +A+                                       
Sbjct: 466 AGSGAVRDRWESLAALVRLAEQFCASQLAA------------------------------ 495

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                     +L +L++EL++               V + ++H AKGLE   VFLV    
Sbjct: 496 ------GRQVTLADLVAELDERAAAQHAPTVEG---VTLASLHAAKGLEWDAVFLVGLTE 546

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +                                     +         EE  RLLYVG+
Sbjct: 547 GMVP-----------------------------------ITYAKTDPQVEEERRLLYVGV 571

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK-LTNSINKDEWIAYEW 714
           TRA   L +    + S   ++N+R    +      +     ++      I +    A   
Sbjct: 572 TRARRHLALSWALSRSPGGRANRRPSRFLNGLRPGSAAPAPRMPGGAGGIERGSGGAIAP 631

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                                E K+ +    P + D      L     +  G+    +
Sbjct: 632 VRKRRGPVHCRVCGRTLTDAGEMKLRRCEDCPSELDEALYERLRDWRAEQAGQLGQPA 689


>gi|50954628|ref|YP_061916.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951110|gb|AAT88811.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 1043

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 110/1014 (10%), Positives = 272/1014 (26%), Gaps = 161/1014 (15%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L  R G+            L      + +         + TG       A+ L    +  
Sbjct: 89   LALRLGVPTPGPLARTATSLAFQLARERARRTGEEPPRLLTGGEQDRIIAELLAGQLEDG 148

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                   +L                 + +     +L+E + +  +    +     +    
Sbjct: 149  TGPLWPDVL-------------GPEVRSLRGFRTELRELIARCAER--GVSPARLSELGT 193

Query: 121  KSTLASLTLAKYLNAHYEEAKK--KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +       A    A Y+      +   +D  +LI +   +++       +R        
Sbjct: 194  ITGREGWRAAAGFIAEYQSVLDSYRGRFVDAAELIASAVAIVRDGSPLDCLRA------- 246

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             + +D++Q+ ++    ++R+L           S    + A GD   +  +F GAE   + 
Sbjct: 247  -VFVDDLQEATVATVALLRALA----------SRGVAIIAFGDPDVASTAFRGAEATALG 295

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            +            G   +   L  + R T  +  +  ++      A    +   +  R  
Sbjct: 296  QLGARL-------GVPVTRFVLATAHRQTPVLRELTARMTERIGTAAAGVQRVASAGRGE 348

Query: 299  SSRIGQ-VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
              R G     V +   V +  ++    ++       D                       
Sbjct: 349  PERTGGTRPEVVIISAVSTPSEAARLARRLRERRLLD----------------------- 385

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHL 416
                         +   ++ V+VR     P +       +   K S+ G   R +     
Sbjct: 386  ------------GVPWGEMAVVVRSGAHIPGLARALAVAEVPTKTSIAGRALRDVFAARQ 433

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
             I         +    +  +   +L  P        + ++     + E   +  +   + 
Sbjct: 434  LITLAGIEVGALELTPERAA--ELLLGPFGGLDSISLRRLRLALRQEELASDGNRAADDL 491

Query: 477  GISKFQ-----------------HVIKYIHELIHIAQFCS-PHDFFTLILGAKKGRQQFI 518
             +                      + + +      A   S   +            ++++
Sbjct: 492  LVEALADPARLATIDSSPARRAARLAETLRSGREKAATGSTIEELLWHAWERSGLARRWM 551

Query: 519  SRF------GNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYP-PTIKRAHSA 567
             +        +E    LD          R  E+       + + EL     P    A   
Sbjct: 552  EQSERSGIVADEANRHLDGVVALFTAARRFVERFPERPASDFVVELLGADVPEDTLAAQT 611

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              + V + T     G E  VV +      V+ +  ++   + P                 
Sbjct: 612  AGDAVLVCTSSATIGREFEVVAVARLQESVWPNLRLRGSLLHPQELGSAL---------- 661

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
              +      +  +     +  R+  + ++RA  Q+++    N   +     R   ++   
Sbjct: 662  --DGRKTETEDQRAQVLGDELRMFALAVSRARGQVLLTATVNDDEQPSPFLRLAGELAAP 719

Query: 688  SFHNDERVKKIK-LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
               +      ++ +   + +                  +         D   + +     
Sbjct: 720  DTEDSIHPLSLRGMVGRLRRRLVTTGAPEAAAALARLADAGVEGADPADWYGLAEPTTEE 779

Query: 747  IKNDINEPY---ILNPSTIDTKGKTNLESLLSDNQT------FNRGLIIHKLLQVIFTLP 797
               D+ +P     L+PS + T  K+ L   + +            G ++H +++      
Sbjct: 780  PLVDLTDPEAGVRLSPSRLGTFEKSPLAWFVEEMAASPSSLTAGIGTVVHAVMEEASATG 839

Query: 798  E----HKRKNFITSYCTKNAKLWP-----AKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
            E             +     +         +  + L+  ++  L +              
Sbjct: 840  EFGVDALWAGIEQRWAELAFESPWVEERERRRTRGLVGGVSDYLRD------FERAGGRL 893

Query: 849  VSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            +   G+         I G+ID++  +    + + + KT   VP   E       AQL  Y
Sbjct: 894  LGSEGEFELRLGRARIGGKIDRVEATPDGTVVLVDLKTGRTVPSAAETAS---HAQLGAY 950

Query: 908  EKIL-----KDSYPNKSLVCLLIY----VSEPKVFIIPQNKLNKA-FAEISTKI 951
            +  L     +++         L++    V       + Q++++      +  ++
Sbjct: 951  QLALEHGAIEEAGERPPGGAKLLFVAKGVRGKPYRELVQDRVDAEGLERLKQRV 1004


>gi|315638948|ref|ZP_07894119.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter upsaliensis JV21]
 gi|315480977|gb|EFU71610.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Campylobacter upsaliensis JV21]
          Length = 675

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 94/616 (15%), Positives = 187/616 (30%), Gaps = 182/616 (29%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   +DF D                 +      E + IL+DE QD
Sbjct: 168 EIYEDILKEYDAEKKRFNYVDFND----------LLLNLKELLKTQKHEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNSLQSSLIEAF------------ESKSLFCVGDYDQSIYAFNGADINIIGGFKERF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----LDAQIFSLNKNYRSSKSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V++ D    P    +   F                   I+ MI          
Sbjct: 298 ----ELIVTRQDEFKAPSLLIFDELFSQ--------------YQNIAKMI---------Y 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       +    R       I+ V        + L +K   A+   
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGMEVALRE----RGIASVRKGSGSFFESLEVKAFCAMLAL 386

Query: 428 ILSQEDDLSFVCMLKS--------------PLFNFSEDDIFKICTQRHETETVYEYIQK- 472
           I++ +D ++F+ +++                L    + ++ K   +  ++ ++  Y ++ 
Sbjct: 387 IVNPKDIMAFIHLIQYTKGVGGVLAKDIFDALLKLGDGNLIKGFLEPDKSVSLKNYQKRN 446

Query: 473 ----------------------------------FANCGISKFQHVIKYIHELIHIAQFC 498
                                                      + +  ++ E+       
Sbjct: 447 YELGLFADLDDLANEKRFDFTSEFYAHPILKLSKINENCAKNLEKLYFFLKEVERKRHSL 506

Query: 499 SPH------DFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNF--TLRNEQNSYSS 546
                    +FF  I       ++  +R G        + L +       L+    +Y  
Sbjct: 507 EVLNCIFNNEFFKEICEEL-ATKRATNRAGQVDLLRKNENLQKIEAKFGILKEFAKNYGD 565

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           + +  + L      +     ++   V +++VH +KGLE  +VF+VD     F ++     
Sbjct: 566 IYKYYNFLTLGSSEM-----SSGKGVNLLSVHASKGLEFELVFVVDLAQNRFPNQ----- 615

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                               + EE  RL YV +TRA + L +  
Sbjct: 616 -----------------------------KLMAMGGSLEEERRLFYVAVTRAKNILYLSY 646

Query: 667 HSNTSNEKKSNQRTWY 682
                ++K   + + +
Sbjct: 647 AKYDKDKKTHYKPSCF 662


>gi|284166465|ref|YP_003404744.1| UvrD/REP helicase [Haloterrigena turkmenica DSM 5511]
 gi|284016120|gb|ADB62071.1| UvrD/REP helicase [Haloterrigena turkmenica DSM 5511]
          Length = 1290

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 99/654 (15%), Positives = 203/654 (31%), Gaps = 69/654 (10%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK------------RDVSAWIRYKI 173
                  + A Y +A  +   LDF++L+     LL+                   I  +I
Sbjct: 333 LARHYTDVYADYHDALAEEGALDFDELVRTATGLLEDGAEHRSADGSNGSATRETIADEI 392

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             E   +  DE QDT   Q+ +I  LT+              L A+GD+ Q+IY + G +
Sbjct: 393 TGEWTQVYCDEFQDTDETQFALITELTDG--------PDRPDLLAIGDKDQAIYGWRGTD 444

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            + + R                  IEL L+FRS  +IL + +      ++++ L E   T
Sbjct: 445 REGLDRLADAYD--------DHRGIELELNFRSRQEILDLTNHCDYGSQSSKRLREVGRT 496

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              +R+      G                    E        +  ++     A ++A T+
Sbjct: 497 PGEYRTDSDATAGR------------ETGFETDEDRPDRVVKIESDAVGPSPADQVATTV 544

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
           S ++  +      +      +DI V+VR  +    +    R      +I    +      
Sbjct: 545 SRLLNGEAENVPRR----SLEDIAVIVRTNRHAQAVADELRE----RRIPYEISGSPRGE 596

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
               I+ L++  R ++  + D     +L       SE D+  +             +   
Sbjct: 597 IDPGIRTLVSYLRVLVDPDADAHLRRVLLYRYR-LSEADLATLQRADGSLYDAVMAVGPD 655

Query: 474 AN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           A           + +    ++ +L  +        F        +  + F++    E ++
Sbjct: 656 AEVESTALEDPDRVRRARDHLAKLEDVRDVYPLSGFVQRFREVTR-LEWFLTSEEREELE 714

Query: 528 VLDEFLNFT--LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            ++ F++             S  + +    Q   + +   + + + + +MTVH AKGLE 
Sbjct: 715 RVERFVDAYTGDSVIGTLTPSFVDALERTLQGGGSERTRGTQSADSIDVMTVHQAKGLEF 774

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V +     + +              +        +  +   + I S L+  L   T  
Sbjct: 775 DTVLVPYLSDEEW----------CVERDYAQRARYRLLAATLDDEIESPLLADLATETVG 824

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  R+L+V +TRA + L +        +   ++            + E     +     +
Sbjct: 825 EEWRVLHVALTRAENHLFVFGSV-YDYDGDEDELGCATADACLSGDIEWSVAGERMELWS 883

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                       +PE      +E       +              +      + 
Sbjct: 884 SLRASFERVRETYPETVVDRTDELAAAASVDPGTITYYAGYDDRYVEPLETRDA 937



 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 68/175 (38%), Gaps = 19/175 (10%)

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
            ++ +   G + H + +  F      R+ +  +   +       +  + +L  I R  E  
Sbjct: 1077 ESGSRLVGTVFHDVAEEAFYREYRTREAWREAAVRQLTARDLLEYREGVLGCIDRFFEAA 1136

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDII-----ISGRIDQISIS-QQNIFIFEYKTHHHV 889
                  +  +  E  V+ ++    +D+      + G ID I  +    + + +YK     
Sbjct: 1137 A-ADYDAPVADWE-PVAAELPFSLEDVADVTGDVVGYIDSIRRTPDGELAVLDYK----- 1189

Query: 890  PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL-LIYVS---EPKVFIIPQNKL 940
                E I      QL++Y +  +  + ++ +  +  +YVS    P+V ++  ++L
Sbjct: 1190 -ATAERIAPADATQLALYARACERRF-DEPVAAVGYVYVSEAVGPRVDLLDADEL 1242


>gi|297626188|ref|YP_003687951.1| DNA helicase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921953|emb|CBL56513.1| DNA helicase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 718

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 87/678 (12%), Positives = 170/678 (25%), Gaps = 168/678 (24%)

Query: 7   LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           LS  ++ + I    +                       T    A    +    +      
Sbjct: 64  LSGAQAPDSILAVTFTTRAAGEMRARLAALGVPRVQARTFHSAALRQIRYFWPRATGREL 123

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKSTL 124
             ++           +    +       DL  ++  ++  +               + + 
Sbjct: 124 PEIAGSTFGLVAEAARRHHVRTDTAVIRDLSSEISWAKSTNVLPAEYAAMAERAGHQVSG 183

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            +      + A YE  K +  V+D++D+++    L+ +      +  +      H ++DE
Sbjct: 184 VTPATVAKVAADYERVKAERQVMDYDDILLCAVSLMHEHPE---VAQEFRSVYRHFVVDE 240

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD S +Q  ++     D             L  VGD  Q+I+SF GA+ + +    R  
Sbjct: 241 YQDVSPLQHSLLLQWLGDCD----------DLCVVGDPDQAIHSFAGADARFLTNFSREF 290

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                       ++ L  ++RST  IL   +++                   H   R   
Sbjct: 291 P--------DAHVLHLNANYRSTPQILKAANELL------------------HPPGRPAV 324

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              V L   + +                 D    +      A  +A  ++          
Sbjct: 325 GRGVILRPVLDAGR-------------PVDLAAAQDP-VAEAGHLAGWLAARHRAG---- 366

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 I   D+ VL R    +P +        +   I           +   ++  +  
Sbjct: 367 ------IAWSDMAVLFRVSAQSPALESAL----DGEHIPYHVRGSERFFERAEVRTALGR 416

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
              +   +        L   L                            A  G  + +  
Sbjct: 417 LTNVAHSDPQADPGESLDEVLTGLG--------------------WTPQAPEGQGRVRER 456

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            +    L  +                         +  ++  D LD  +           
Sbjct: 457 WESWGALREMG-----------------------QQLVSDGADSLDRLVAQIAERAS--- 490

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                               H+     V + T+H+AKGLE   V LV     +      K
Sbjct: 491 ------------------MQHAPVGEGVTLSTLHSAKGLEWEAVALVGVQEGLLPFSLAK 532

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                +   E  RL YVG+TRA   L I
Sbjct: 533 TP-----------------------------------AQVAEERRLFYVGITRARQALRI 557

Query: 665 CKHSNTSNEKKSNQRTWY 682
              ++  N +     + +
Sbjct: 558 SWATSGPNGRGRRNPSRF 575


>gi|223040190|ref|ZP_03610469.1| acyl carrier protein [Campylobacter rectus RM3267]
 gi|222878551|gb|EEF13653.1| acyl carrier protein [Campylobacter rectus RM3267]
          Length = 677

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 106/726 (14%), Positives = 208/726 (28%), Gaps = 194/726 (26%)

Query: 32  NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS-FFLTQKFTPQKNIITQEIN 90
                +          K    +   +           L     L Q    +  + +    
Sbjct: 60  KAAAEMIERLNRHFDKKITSRITAGTFHSVSYSLLKFLEKPVTLKQPSELKTLLKSLVER 119

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-----------TLAKYLNAHYEE 139
           +K   L +               F    + ++    L            + + +   +EE
Sbjct: 120 RKFNHLSDVKPYGGAYLYDAYSLFQNLALKQTFGEWLKERSDEQGVYAEIYEDVLREFEE 179

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K K    DF DL+I   + LK+             +   IL+DE QDT+ +Q  +I + 
Sbjct: 180 EKSKFDYADFNDLLIKMRNELKRGAPL---------KFEEILVDEYQDTNSLQGSLISAF 230

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                         ++LF VGD  QSIY+F+GA  + +   K               I  
Sbjct: 231 ------------ETKSLFCVGDFDQSIYAFNGANIEIIGSFKDRF--------ADAKIYA 270

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L +++RS++ IL + +KV +                                + VV +  
Sbjct: 271 LNINYRSSSAILALANKVIANNPRLYEK------------------------KLVVGREG 306

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
               P+   +   FD              IA  I+                 + ++I ++
Sbjct: 307 KFTLPKLLVYNELFDQYAN----------IAQIIA-------------VSKYKKENIAII 343

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R       +    R L     I           +   ++  M L   +++ +D ++F+ 
Sbjct: 344 FRNNSSADGLEVALREL----GIGSKRKGGVSFFESREVRAAMDLLGILINPKDIMAFIH 399

Query: 440 ML------------------------------------------KSPLFNFSEDDIFKIC 457
           +                                           K+  +     D     
Sbjct: 400 VCEYAKGVGAALSKEIFEVLSKVGHGDVVRGFLQPDDGVEAFAKKTKNYQLGLFDELDEV 459

Query: 458 TQRHE------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGA 510
            ++        +E  + +               +  I+  ++ A+  S P      +  +
Sbjct: 460 GEKSRFAKFNFSEKFFAHPVLKMQKLSESGGQFLYEIYNFLNAAKRHSRPTSLIEDLKNS 519

Query: 511 KKG---RQQFISRFGNEVIDVLDE------FLNFTLRNE-----QNSYSSLQELISELEQ 556
           K          ++   +    +DE            + E       +YS  ++  + +  
Sbjct: 520 KIYALIADSLATKRATQKNGNVDETLKKEALERIAGKLEVLGELAKNYSEAEKFYNFITL 579

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               +     ++   V +++VH +KGLE  +VF+VD     F +                
Sbjct: 580 GSSEM-----SSGEGVNLLSVHASKGLEFDLVFVVDLAQNRFPN---------------- 618

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                             L       + EE  RL YV +TRA D+LI+        +K +
Sbjct: 619 ------------------LKLMSMGGSLEEERRLFYVAVTRARDELILSYAKYDKIKKIN 660

Query: 677 NQRTWY 682
            Q + +
Sbjct: 661 YQPSQF 666


>gi|326771907|ref|ZP_08231192.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
 gi|326638040|gb|EGE38941.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
          Length = 717

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 99/761 (13%), Positives = 191/761 (25%), Gaps = 164/761 (21%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQ--ASQTQCIEERFSLLSSFFLTQKFTPQK 82
                ++   ++     G       A  L+Q        I  R   + +          +
Sbjct: 96  ARAAGEMRSRLADLGVPGVQARTFHAAALRQLTYFWPTAIGGRRPDIQAHKAPLVGAAAR 155

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEE 139
            +          DL  +++ ++       D          T  +         + + YEE
Sbjct: 156 RLGLPTDRATVRDLAAEVEWAKVTMTLPEDYAQATVAAGRTGVAGQEAATVAQVLSLYEE 215

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           AK +  V+DFED+++ T  +L        +  ++  +  H ++DE QD S +Q  ++   
Sbjct: 216 AKSERGVIDFEDVLLLTIGILLD---REDVAAQVRGQYKHFVVDEYQDVSPLQQRLLDLW 272

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                         R L  VGD  Q+IYSF GA P  +       +            + 
Sbjct: 273 LG----------RRRQLCVVGDVSQTIYSFTGATPAFLTGFTTRYE--------GARTVR 314

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L   +RST  ++++ ++V S      G        +   + R                  
Sbjct: 315 LSRDYRSTPQVVSLANRVLSRSRRGGGGLHLPAGAVELVAQRPSGPAV------------ 362

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                                     A      +  +              +   +I +L
Sbjct: 363 ---------------RFETYDDDIAEAEGAVAQVRRLQAAG----------VPLSEIAIL 397

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    + +            +I  +        +   +K  MA+       E       
Sbjct: 398 YRTNSQSEVFEQAL----AGAQIGYLVRGGERFFEREEVKRAMAVILGAARTE------- 446

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
                     +  +     Q   T    E   +         +     ++ L        
Sbjct: 447 ----------KATLTGDLGQDARTVLSREGWSEEPPAPRGAVRERWDALNAL-------- 488

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                                            +       Q   + L    +EL +   
Sbjct: 489 ---------------------------------VALADEMAQTRGADLDAFHTELRERAD 515

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                       V + ++H AKGLE   V L      +                      
Sbjct: 516 AQNAPTVEG---VTLSSLHAAKGLEWDAVILAGVCEGLLP-------------------- 552

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                          +     ++  EE  RLLYVG+TRA + LII      +   +++++
Sbjct: 553 ---------------ISLAEGQAAIEEERRLLYVGVTRAREHLIISYARARNAGGRASRK 597

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
               +              +     +  E      +     N P       ++L   +  
Sbjct: 598 PSRFLDGLWPTGHGSRDASRHQGRQSAKERSRQSAADFEANNDP-RTIALFEELRAWRSQ 656

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             K  S     +     L    +         SL+      
Sbjct: 657 IAKERSRPAYTVFADATLRDIAVVKPTSLPQLSLIRGVGAT 697


>gi|297562736|ref|YP_003681710.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296847184|gb|ADH69204.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 708

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 86/702 (12%), Positives = 182/702 (25%), Gaps = 177/702 (25%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YE+ ++++ +LDFE ++  T  ++ +      I  ++ ++  + ++DE QD +
Sbjct: 172 VARVFEAYEDLRREHNLLDFESMLELTAGMITEYPA---IAQRVREQYRYFVVDEFQDVN 228

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++ +   D             L  VGD  Q+IYSF GA P  +            
Sbjct: 229 PLQRLLLDAWLGD----------RDDLCVVGDPSQTIYSFAGATPGYLTGFGARYPH--- 275

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 ++++L   +RST  ++ V + V +           S   +  ++ R      + 
Sbjct: 276 -----ATVVQLVRDYRSTPQVVRVANHVIAQARGT-----TSAQHLTLQAQRPDGPDPM- 324

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                       +       A  +A  IS ++   T        
Sbjct: 325 --------------------------YQEYDDEPAEATGVARKISVLLEGGTP------- 351

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
              A +I VLVR    +            D  +           +   IK  +   R   
Sbjct: 352 ---ASEIAVLVRTNGQSASYEQAL----TDEGVPFTMRGTTRFFERPEIKQAVHTLR--- 401

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                                                       A          ++ + 
Sbjct: 402 --------------------------------------GARHGAAGEEAEPLVRTVRQLL 423

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
             + + +               +GRQ          +  L E +            S   
Sbjct: 424 GQLGLTESAP------------EGRQARERWESLTALAQLAEDMAAA----PRPDGSPVT 467

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           +   +++    +   H+     V I ++H AKGLE   VFLV     +            
Sbjct: 468 MADLVDELDVRMATEHAPGFEGVTIASLHAAKGLEWDAVFLVGLTEGMMP---------- 517

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--H 667
                                    +I        EE  RL YVG+TRA + L +     
Sbjct: 518 -------------------------IIYAETDEQVEEERRLFYVGVTRAREHLAMSWSLA 552

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
            +    K      + D +  +  +    +  +    + +    +   +           +
Sbjct: 553 RSPGGRKTRKPSRFLDGLRPASPSTASRRAERRKGGVTRCRVCSATLTDAAERKLGRCLD 612

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF------- 780
                     +  +        +   P  +  +    +     E                
Sbjct: 613 CPSSYDEALLERLRDWRRACAQEQKVPAYVIFTDATLQAVAEQEPGSLTQLAAVSGVGAV 672

Query: 781 ---NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                G  +      +  +      + +      + +    +
Sbjct: 673 KLDRYGEAV------LALVAGADPADVMDRRTEDDGEEAADE 708


>gi|238484849|ref|XP_002373663.1| ATP-dependent DNA helicase, putative [Aspergillus flavus NRRL3357]
 gi|220701713|gb|EED58051.1| ATP-dependent DNA helicase, putative [Aspergillus flavus NRRL3357]
          Length = 787

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 136/426 (31%), Gaps = 90/426 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE     + +LD++DL++    LL++              +  +L+DE QDT+ I
Sbjct: 37  QVYQAYESHLADSNLLDYDDLLLRCAQLLRQHPECV-------SNVQSVLVDEFQDTNHI 89

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q++++              S  R +  VGD  QSIY F  AE K + R +++        
Sbjct: 90  QYQLMNLFA----------SQNRRITVVGDPDQSIYGFRSAEIKNLTRMQQLY------- 132

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               S++ L  ++RS+  IL+    V     +        T ++                
Sbjct: 133 -SDTSVVLLEDNYRSSGSILSSAQDVIEQDSSRPAKRLQPTHSVGTMPVLRKLP------ 185

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                        +A   A+ I   I   I           +++
Sbjct: 186 -----------------------------TAEAEAQWIVLEIKRCIA-------MTGKLL 209

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D  +L+R    +  I            +           D + IK L+   R I   
Sbjct: 210 KYSDFAILLRSAALSRQIESEM----GKQGMPYRMVGGLRFFDRVEIKLLLDYLRVISQP 265

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYIQKFANCGI-----------S 479
            +  + + ++  P     E+ I  + +   +  + ++++++  A               +
Sbjct: 266 GNTDALLRIINVPSRKIGEESIRSLMSGAEKANKPLWDFMKDVAQGRRSTEKTLSKPTSN 325

Query: 480 KFQHVIKYI----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEF 532
              + +  I     +L+      +P      ++     R+   S +G         ++E 
Sbjct: 326 GLGNFVGLIESSREKLLECTDCSAPKKLLEFVIKKLSFREYLTSTYGTNEENKWANVEEL 385

Query: 533 LNFTLR 538
           +     
Sbjct: 386 MGQAED 391



 Score = 45.7 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 10/139 (7%)

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ----------R 679
            + + +I H +    +E  RLLYV MTRA   L +      S   ++             
Sbjct: 396 AVYNGIIPHSRAEDSDEERRLLYVAMTRAQALLYLSYPLEQSRSGETTSVSTFLPEKIIE 455

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
           + + ++  + H         +            E     P     +     ++  D    
Sbjct: 456 SRFRLLGPNLHEQIVYAIADILRRPRPTLEAMLEGQVSLPSTLDDQWTVDGREAADAVFR 515

Query: 740 PKKLFSPIKNDINEPYILN 758
                +    + +      
Sbjct: 516 WDGSRAVDGEEPSAKRPRY 534


>gi|126434058|ref|YP_001069749.1| UvrD/REP helicase [Mycobacterium sp. JLS]
 gi|126233858|gb|ABN97258.1| UvrD/REP helicase [Mycobacterium sp. JLS]
          Length = 1051

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 92/957 (9%), Positives = 231/957 (24%), Gaps = 175/957 (18%)

Query: 32  NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91
           N      + T         + L  A   +  +       +         +  + T     
Sbjct: 112 NGDAPPRLITSAEQDGIIRELL--AGDLEDGDRSAVAWPAAL-------RPALTTAGFAT 162

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE- 150
           +  DL  +  +   + + ++      +  +        A      YE+       +    
Sbjct: 163 ELRDLMARCTERGVDPVALQRLGRLSRRPE-----WAAAGRFAQAYEQIMLLRSAVGMAA 217

Query: 151 -----------DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
                      +L+    +      + A +       I  +L+D+ Q        ++R L
Sbjct: 218 PQATTPALGAAELVGAALEAFA---MDADLLAAERSRIGLLLVDDAQHLDPQAARLVRVL 274

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                +              GD  QS++ F GA+P  +               ++ S + 
Sbjct: 275 AAGADLS----------VFAGDPDQSVFGFRGADPALL-------------HMEEGSAVV 311

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  S R  + +   +  +       +                                  
Sbjct: 312 LTRSHRCASAVARAISGIARRLPGQR---------------------------------- 337

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                +                 +  A   +  I++ +    +        +   ++ V+
Sbjct: 338 ----QEFVGSEDGGGDGSVAVRVAATAHAESALIADALRRAHLVD-----GVAWSEMAVI 388

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           VR     P              + V       L +  A + L+ +               
Sbjct: 389 VRS---LPRAGAPLARALTAAGVPVDLPAAAPLVEEPAARALLTVLEATADGLTGAQAEA 445

Query: 440 MLKSPLFNFSEDDIFKICTQRHETE-----------------TVYEYIQKFANCGISKFQ 482
           +L  P+       + ++       +                          +       +
Sbjct: 446 LLSGPVGRVDPVTMRQVRRALRRADGSQPPREFTDLLVEALTGPLPAASDVSAELQRPLR 505

Query: 483 HVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFIS------RFGNEVIDVLD---EF 532
            V   +            P             ++++++        G      LD     
Sbjct: 506 RVRSVLAAARRSVDDGLDPRHTLWQAWHRSGLQRRWLAASERGGAAGARADRDLDAVTAL 565

Query: 533 LNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFL 590
            +   +   + + +S++ L+  +        R     +   V +++ H A   E   V +
Sbjct: 566 FDVADQYVTRTAGASVRGLLDHVAALGLPPGRRGERRDPEAVAVLSAHAALAGEWDFVVI 625

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 ++ +   +   +      D    +            +      +     E  RL
Sbjct: 626 AGLQEGLWPNTIPRGGVLGTQRLVDVLDGVTD---------SASDAVSTRAPLLAEERRL 676

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS---INKD 707
           L     RA  ++++    + S  +      +   +     + +      L          
Sbjct: 677 LIAAFGRARRRVLVTAVDSDSGAEALLPSPFCQELTALATDPDDGPPAPLRAPRVLAPSA 736

Query: 708 EWIAYEWSTHHPENTPLEREET----------------IKQLMDEQKIPKKLFSPIKNDI 751
                      P+    +                                    P+ ND 
Sbjct: 737 LVGRLRAVVCAPDGAVDDAARECAAAQLARLAAAGVPGADPGQWHAMTTLSTDEPLWNDE 796

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTF-------NRGLIIHKLLQVIFTLPEHKRKNF 804
            +   L+PST+       L  LL  +            G ++H L+            + 
Sbjct: 797 QQVVTLSPSTLQALTDCPLRWLLERHGGRDGRDVRSAVGSLLHALVSEPGRTESQLLNDL 856

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI-------NC 857
              +     +     + +  L     +L       A +    +EV     +       + 
Sbjct: 857 ERVWADLPYEAQWHADNE--LTRHQAMLSAFEQWRAQTRRELTEVGTEIDVDGVVCDADD 914

Query: 858 PKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            +  + + GR+D++       + + + KT      + +       AQL++Y+  +  
Sbjct: 915 GRPAVRVRGRLDRLERDSAGRLVVVDIKTGKSPVTKDDAQR---HAQLAMYQLAVAA 968


>gi|269122166|ref|YP_003310343.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
 gi|268616044|gb|ACZ10412.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386]
          Length = 995

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 137/886 (15%), Positives = 272/886 (30%), Gaps = 147/886 (16%)

Query: 56  ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF- 114
              +   E+ F      FL            +    K  +  E  K+    + KI  ++ 
Sbjct: 239 FLDSNDKEKYFLKNIREFLKATSDII-WNGRKIKGNKYKEAAENFKEEYRNYKKILAKYI 297

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD-------VSA 167
              ++         ++  +   Y++ +      +  D  I T  LL + +       V+ 
Sbjct: 298 FNEEIISYEKDYFEISDIIFGIYDQIRFSEKSFNNSDRTIYTYKLLMENNRYINNGKVTE 357

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
                   EI  + IDE QDTS++QW ++R++ E            +    VGD KQSIY
Sbjct: 358 EFYDFFGNEIETVFIDEFQDTSVLQWRILRAIVE----------GSKNAVIVGDAKQSIY 407

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            +   E       K++ +        + ++  L  ++R+   ++  ++K F+   +    
Sbjct: 408 GWRDGE-------KKLFENLENILDGEVNVNSLAKTYRTKEKVMIFLNKFFNNINDTWNY 460

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
            E    +           G V+L        ++    +  S  +                
Sbjct: 461 EEVEYNSPE---------GYVELNAYNNDDPETDTIEEILSDIT---------------- 495

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
                 +++                 ++  V+ RK  +   I       K    I  +  
Sbjct: 496 ------ASLKENG-----------NYRNTAVIARKNSELANIAAYLETNK----IPFILE 534

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
               L ++   + +  L  F++  +D +S V  L+S   + + +D+  I     E +   
Sbjct: 535 SNKTLKEYEETEAVFYLFHFLV-YKDFISLVKFLRSSFIDINAEDLRYIL----ENKYKI 589

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +   +  +      +   K +     +         F                  + V  
Sbjct: 590 QGYLEGRSEKPGVLEDFFKKLVIAEKMEYTDKVRYIFENF-------NIIKEEKSSIVYK 642

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +    N  L+ E     S+++ +S+ E+    +        N V + T+H +KGLE   
Sbjct: 643 NILYLYNLMLKFE-----SMEDFLSKTEENKELLSIQGLNETNAVILTTIHKSKGLEYNT 697

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLND---DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
           V+ +   S    +       I              I+  +++    ++ +  K  K S  
Sbjct: 698 VYYLIDSSGKKGNNRGGLEFITELDKTFTKVEDYIIFNSRNRGITELLDEYRKFPKNSDL 757

Query: 645 EEY---NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           +E       LYV +TRA   L I  ++     +  N                        
Sbjct: 758 KEEDEKINNLYVALTRAKSNLYIFYYTGKKGFRNDNLEN-------------------AL 798

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
              +  E      S +       + EE+ +    E  I K      K D      +  ST
Sbjct: 799 YKASGLEIEEVAGSFYTDGVYQNKEEESKRPEKKEINIKKYFIENKKYD-----KIVKST 853

Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
              + + + +           GL IH   + I    E +R    +    K   +    + 
Sbjct: 854 KSLEIENSRKE----------GLAIHYYFENIKYAGEEERYFARSQVFQKYGNMLGKSKL 903

Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID--QISISQQNIF 879
           + +       +               EV    +I       +   RID   +  + +   
Sbjct: 904 EEIFKRADNFI--FGNKELFYKT--WEVFNEFEITDGVTGEVF--RIDKLLLDRTGKKAV 957

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
           I ++K+     QE          Q+  YEKILK+  P+       I
Sbjct: 958 ILDFKSGEIHNQE----------QILKYEKILKEKLPDYDFRKEFI 993


>gi|296269401|ref|YP_003652033.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
 gi|296092188|gb|ADG88140.1| UvrD/REP helicase [Thermobispora bispora DSM 43833]
          Length = 1089

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 98/708 (13%), Positives = 187/708 (26%), Gaps = 170/708 (24%)

Query: 6    GLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETGNPTIL--------KKAQ 51
            GL  ++       D        P      +  ++   L    G P           + A+
Sbjct: 497  GLDPDQRAAAEITDGPLLIIAGPGTGKTRTLTHRIAHLVTGRGVPPEQCLAITFTRRAAE 556

Query: 52   TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--- 108
             +++       ++   +  + F +      +    +     S  + +  ++         
Sbjct: 557  EMRERLTALVPDQAPRVTVATFHSLGLQILREQHERAGLSPSFGIADHARQLAVATEVTG 616

Query: 109  ---KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
               + R         + T             Y +A +   ++DF+DLI     +L+    
Sbjct: 617  DEKEARRLLAALSRHRRTGEGGPEQAEFAERYGKALRGQDLVDFDDLIELPVAMLEADPE 676

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
               +          I +DE QD    Q+ ++R L                + A+GD  Q+
Sbjct: 677  ---LAAAYRDRFRWISVDEYQDVDERQYRLLRLLA----------PPDGNIAAIGDPDQA 723

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY F GA+    LR +                ++L  ++RS A I+T   +V +      
Sbjct: 724  IYRFRGADVGFFLRFQEDFP--------GARTVQLTRNYRSAATIVTGALQVIAPASLVP 775

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            G           R         + L E    Q +++                        
Sbjct: 776  G--------RVLRPVGAHGDARIGLHEAADEQAEAE------------------------ 803

Query: 346  ARRIAYTISNMIGTDTIFSNGKKR-------VIQAKDILVLVRKRKDTPLITFLTRFLKN 398
               +A TI  MIG  +  +    R        +   D  VL R  +    +         
Sbjct: 804  --FVARTIEQMIGGASFHALDSGRVDSDGAQGLGFSDFAVLYRTDRQARAVMDAL----T 857

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
               +         L D   ++ L+A   +                               
Sbjct: 858  RAGLPFQKRSHDRLADRPGVEPLLAELAYAD----------------------------- 888

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                           +  G S        +  L   A           +L     +++  
Sbjct: 889  ---------PAAGGASPDGASPDGAARPVLDRLRRAA---------QAVLDRTPEQER-- 928

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                ++    +   +       +     L    +EL               + + ++T+H
Sbjct: 929  ----DQAAAEIHSAVELLRPLAERCGEDLDRFRTELALGVEVDTWDP--RADRISLLTLH 982

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             AKGLE PVVF+V     +   +                                   + 
Sbjct: 983  AAKGLEFPVVFVVGCEDGLLPLRQPG-----------------------------TAPED 1013

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
            L +    E  RLL+VGMTRA   L +      +      +      + 
Sbjct: 1014 LDEEQVREERRLLFVGMTRAQRHLYLSYAMQRTRHGAVRKTGRSPFLA 1061


>gi|227498173|ref|ZP_03928344.1| ATP-dependent DNA helicase (UvrD/REP) [Actinomyces urogenitalis DSM
           15434]
 gi|226832423|gb|EEH64806.1| ATP-dependent DNA helicase (UvrD/REP) [Actinomyces urogenitalis DSM
           15434]
          Length = 673

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 96/713 (13%), Positives = 199/713 (27%), Gaps = 168/713 (23%)

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKI-----RDRFNTYKMFKSTLAS-----LTLAKYL 133
           ++T       P  +  ++    E         R +    +  ++   +     L     L
Sbjct: 109 VMTAARRLGLPSDRAFVRDLAAEVEWAKVTMTRPQTYAQRAVEAGRTAPGGLDLDTVARL 168

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YEE K ++ V+DFED+++    +L+       +  +I  +  H ++DE QD S +Q 
Sbjct: 169 YEAYEEVKTESEVIDFEDVLLLMVAVLRS---REDVAAQIRGQYKHFVVDEYQDVSPLQH 225

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +++    +             L  VGD  Q+IYSF GA P+ +                
Sbjct: 226 RLLQLWLGE---------RRSQLCVVGDVSQTIYSFTGATPRYLTGFASEYP-------- 268

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + L   +RST  ++++ ++V S P  +  L+  +              G V+L  Q
Sbjct: 269 GARTVRLTRDYRSTPQVVSLANRVLSRPRRSGRLALPA--------------GAVELVAQ 314

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
             S    +    ++                  A  +   +  +              +  
Sbjct: 315 RPSGPAVRFTDYEDD--------------VCEAEGVVAQVRRLHTAG----------VPL 350

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +I VL R     P I            I  +        +   ++  M   R   + E 
Sbjct: 351 SEIAVLYRTAAQAPAIEQALAE----AGIGRLVRGGARFFEREEVRTAMRRLRAAATTE- 405

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
                    S         +        +  +    +           +     ++ L+ 
Sbjct: 406 -----RGQLSGDVGEDARTVLARVGWAPQPPSPRGAM-----------RERWDSLNALVE 449

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
           +A                                                 + L  L+ E
Sbjct: 450 LAD-----------------------------------------DLASTRGADLGGLVRE 468

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           LE+               V + T+H AKGLE   V +V     +                
Sbjct: 469 LEERAQAQNAPAVEG---VTLSTIHAAKGLEWDAVIIVGVTDGLLP-------------- 511

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                +         EE  RLLYV +TRA + L++      +  
Sbjct: 512 ---------------------ISLAEGPEGIEEERRLLYVAVTRAREHLVLSYARARATG 550

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            +++++    +       +    +    +S       A        + + +   E +++ 
Sbjct: 551 SRASRKPSRFLTGIWPTAEPTPPRAAKLSSPRSSRRQAAAEFEAENDASTVALFEELRRW 610

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
             E    K + +      +   ++      T  + +    +   +    G  +
Sbjct: 611 RGEVASSKSVPAYSVFADSTLRLIAILKPSTLPQLSAVHGVGPVKLAEYGDAL 663


>gi|152965139|ref|YP_001360923.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151359656|gb|ABS02659.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 1098

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 96/942 (10%), Positives = 228/942 (24%), Gaps = 101/942 (10%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEIN 90
            +      + +G       A+ L+        E    + L         T    +      
Sbjct: 105  DGAPPPRLISGAEQDAILAELLRGHLAVTSPEGPDAAELPELDPAGASTATGGLRVPGWP 164

Query: 91   KKSPDLKEKLKKSQDEFIKIR---------DRFNTYKMFKSTLASLTLAKYLNAHYEE-- 139
               P     L+  ++E   +                            A  L   Y    
Sbjct: 165  SDVPRASWGLRSFRNELRDLLMRAVERGLGPADLADLGRAHARPEWCAAADLLEEYLAVN 224

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            A  +    D   ++      L+       +        + + +D+  D S     ++  +
Sbjct: 225  ALGRADAYDPAGVVDEAVAALRAEPE---LLAAERARWDLVAVDDAHDLSEAALRLLEVV 281

Query: 200  TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                          R L    D       F GA+ +                G   + + 
Sbjct: 282  AG-----------GRDLVLATDPDSVTQGFRGADARTAAELADRFG---PRPGVGATTVV 327

Query: 260  LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
            L    R    +  V   V +      G  + +       +    + G V++     +  +
Sbjct: 328  LGTDHRQRPLLHAVSRAVSTRIGALGGAPQRAARPAPEVAV---ERGRVEVAVLASATQE 384

Query: 320  SQCNPQQESWTSYFDSLPQESSASIL--ARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
            +    Q+       D +P    A ++  A   A    ++       +     V    +  
Sbjct: 385  ASWVAQRLRRRHLLDGVPWSQMAVVVRSAGHTAALRRSLAAAGVPLAVPLAEVPVRDEPA 444

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            V       T ++           ++         +     ++  +             + 
Sbjct: 445  VRPLLSALTVVLDPAALDDAAARELVTSPLGGADVVALRRLRQSLRRSELAA--GGGRTS 502

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
              +L S L          +     +   +                 +      L   A  
Sbjct: 503  DAVLTSALAGALAAPATDLAAATGDLALLGADDPALGPAVRVALV-LQAGRRALAAAAAG 561

Query: 498  CSPHDFFTLILGAKKGRQQFISR-------------FGNEVIDVLDEFLNFTLRNEQN-- 542
             S       +  A     ++                  +  +D +        R E    
Sbjct: 562  TSAETVLWHLWDASGLAARWQRAALAGAVVEGADAGRADRDLDAVLALFEAAGRFEDRFP 621

Query: 543  SYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               S +  + +L             + +   V + T   A G E  +V +      V+  
Sbjct: 622  GAGSARRFLDQLMAAEVPSDTLADRAPDAGAVTLTTPQGAVGREWDLVVVAGVQEGVWPD 681

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
              ++   +           + + Q +  +   +      +++  E+  RL +V +TRA +
Sbjct: 682  LRLRGSVL------GAQALVDVLQGRDPDGPGA------RRAVLEDELRLFHVAVTRARE 729

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK---IKLTNSINKDEWIAYEWSTH 717
            +L++    +      +      D        DE  +                        
Sbjct: 730  ELVVTAVRDEDERPSAFLDVVADAAGLRTRADEEEEPGLATVPRAVSLPALVARLRQVVC 789

Query: 718  HPENTPLEREE---------------TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
             P+     +                       +   + +           E   ++PS +
Sbjct: 790  APDAVETPQRRAAAAARLAELAAAGVAGADPSEWYGVQELTDDGALRGPGEEVPVSPSRV 849

Query: 763  DTKGKTNLESLLSDNQTF-------NRGLIIHKLLQVIFTLPE---HKRKNFITSYCTKN 812
            ++  +  L  LL  +            G ++H++             +R + +       
Sbjct: 850  ESFERCGLRWLLESSGARPGDSTGQAIGNLVHRIASEAPEADAFELRRRLDLLWPTLGLP 909

Query: 813  AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
                        L  + +L            +  + V V   ++       + GR+D++ 
Sbjct: 910  DGWVAETARARALRMVDKL---AEYHRDARAEGRTLVGVELDVDVQVGRARVRGRVDRLE 966

Query: 873  IS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
               +    + + KT    P   E        QL +Y+   ++
Sbjct: 967  RDAEGRAVVVDLKTGKVQPSRAEVERS---PQLGVYQLAAQE 1005


>gi|218441857|ref|YP_002380186.1| UvrD/REP helicase [Cyanothece sp. PCC 7424]
 gi|218174585|gb|ACK73318.1| UvrD/REP helicase [Cyanothece sp. PCC 7424]
          Length = 781

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 95/684 (13%), Positives = 203/684 (29%), Gaps = 52/684 (7%)

Query: 3   NRFGLSL-NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
               L     + + ++     +           +  S         +  +   +   T  
Sbjct: 92  RELKLPPTGFTVQTLHGLALQIASRHPDLSELNLESSTIIIPTPSHRIIRACVEQWITST 151

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF- 120
            +    LL       + T +    +    +  P L   + +         +       + 
Sbjct: 152 PKRYQVLLEGLQFDGEETERLRRQSVLRTEVLPSLAHTVIREAKSSGLSPENVWQLNSYS 211

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +    +L +A  L   YE+  +    +D++D+I+    +L+       IR+    ++  +
Sbjct: 212 QDPYDTLAIAAGLYEQYEKLMRSRAYIDYDDMILAALRVLEDEG----IRHHWQTQVFGV 267

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLR 239
             DE QD+S +Q  +I  L +D     N  +    L  VGD  Q+I S F  A+P     
Sbjct: 268 FEDEAQDSSPLQERLITVLAQDA----NNPNLAPNLIRVGDPNQAINSTFTPADPVYFNW 323

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +         ++ ++  +  + RS   I+   + V            +        S
Sbjct: 324 FCNL-------CKEENNLATMDQAGRSNEMIIKAANFVLHWVCQRWKTESNYQGNGNQNS 376

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
               Q+         VS  D Q +          +    E     + + I   +  ++  
Sbjct: 377 LNSSQIPFRLQDINPVSVGDPQPDANPLPVGKGLEIYSPEDIFRTV-KLIEKRVIELLSD 435

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
           ++  +             +LVR+ +    +      L  ++ I V           L   
Sbjct: 436 NSNNNA-----------AILVRENRQGRFLAEQLAHLYKEHNIRVYEVSEVD-RSSLIPL 483

Query: 420 DLMALGRFILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           +++ L +F+       +    L+           D+  + T   +    + Y        
Sbjct: 484 EILKLLQFLDRPHSPDNLKSALEVLEQRGLIPAQDLNALATYPEQ----FLYPSPLEPPQ 539

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
               +   +Y   L+        +   + +    K     ++        +  E +    
Sbjct: 540 KPPVEQARRYCCNLLRSKIELPHYYLISFLGMTLKYTGSELATVQKLADRINQETVG--N 597

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            + + + ++L E++S                   ++ I+T+H AKGL+   VF+      
Sbjct: 598 SSLKTTIAALNEIVSSERFEGVEEDNDDQYTRSGQLTIITMHKAKGLDWDYVFIPFLHDD 657

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS------------DLIKHLKKSTQ 644
           V   K           +             + ++               D  +   K   
Sbjct: 658 VLPGKPWVPTAAKFLGDFTLSEVARAQIRAAVHSQYQNSDILPRIPHPVDAWEEANKLKW 717

Query: 645 EEYNRLLYVGMTRASDQLIICKHS 668
            E  RLLYV MTRA   L +    
Sbjct: 718 AEEFRLLYVAMTRAKRLLWMSAAQ 741


>gi|296118831|ref|ZP_06837407.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306]
 gi|295968320|gb|EFG81569.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306]
          Length = 692

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 96/733 (13%), Positives = 194/733 (26%), Gaps = 161/733 (21%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A    +    Q   +    L            +N+      +   D+  +++ 
Sbjct: 85  ARTFHAAALRQLRYFWPQVAGDLPWRLVDNKFPIVSRAVRNVGMDPSKETVRDILSEIEW 144

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNC--VLDFEDLIINTNDL 159
           ++   I         K          L    +   YEE K +    +LDF+DL+I+    
Sbjct: 145 AKASLISADGYVEALKAHDRIAPKDPLKVAKVYQRYEEFKSQPDGMLLDFDDLLIHVAGA 204

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L+    +  +  +  Q+    ++DE QD + +Q  V+ +   +             L  V
Sbjct: 205 LEN---APAVAEEFRQQYRTFVVDEYQDVTPLQQRVLNAWLGE----------RDDLTVV 251

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF GA P  +L   +             ++++L   +RST  +  + + V  
Sbjct: 252 GDANQTIYSFTGASPDFLLDFSKTYDN--------ATVVKLQRDYRSTPQVTDLANTVID 303

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                   +  S   +R       + G V  +                            
Sbjct: 304 KAVGRAAGTRLSLEGMR-------EPGPVPKFH-------------------------AY 331

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            S  I A+ +A  I  ++             + A +I +L R    + +          D
Sbjct: 332 ESEEIEAKEVAGEILTLLNQG----------VAASEIAILYRTNFQSAVFEEAL----AD 377

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I               I +          + D  +    +                  
Sbjct: 378 AGIVYQVRGGDGFFHRQEILEATRSLHRAARRTDLPNDPVAIA----------------- 420

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                   +          ++ +   + +  L          D  + I+    G      
Sbjct: 421 ---KAAFVDIGLSATEPEGAQARERWQSLSAL---------VDLISTIVRDHPGI----- 463

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                                      L  +I +L++     +         V + T+H 
Sbjct: 464 --------------------------DLPGVIVDLQRRASNKQTPTMEG---VTLSTLHA 494

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFLV    ++                               N  +       
Sbjct: 495 AKGLEWDAVFLVGLTEKLLP----------------------------INQAIKAQDDRG 526

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL YVG+TRA   L+       +   +++++    +        +      
Sbjct: 527 DDEAIEEERRLFYVGITRARIHLLCSWALAKTTGSRASRQRTRFLDGVVPELGDSSAHSS 586

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
             +   +        +    +              +     ++  + +  DI +P  +  
Sbjct: 587 RVSRPKRCRVCNGYLNAPADKVLGRHETCESLADEEVFTALRQWRARVSKDIGKPAYVVF 646

Query: 760 STIDTKGKTNLES 772
           +       +    
Sbjct: 647 TDATLLSISEALP 659


>gi|297626181|ref|YP_003687944.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp.
            shermanii CIRM-BIA1]
 gi|296921946|emb|CBL56506.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp.
            shermanii CIRM-BIA1]
          Length = 1123

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 125/1006 (12%), Positives = 255/1006 (25%), Gaps = 139/1006 (13%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP---TILKKAQTLQQASQTQCIE 63
            +      + +    W  P  Q         L+     P   T+      LQ+       +
Sbjct: 45   VEAGAHMDRLVVLTWSRPAAQRLRARIVARLASSQLAPVITTVPGWCLALQRRFGHLDAD 104

Query: 64   ERFSLLSS------------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
             +   + +              L +   P+           S +L+  + +++ + +   
Sbjct: 105  GQLPHVLTGPEQQMQVRELVVQLGRDLWPESVRAAIATMAFSQELRTGMARARQQGLDPD 164

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            D     +                 +Y +        D+ +L+  T  LL +  VS+ +  
Sbjct: 165  DLVRLGRRTGREE--WVSMGLFFENYLDVLDAQPAWDYAELVHRTRLLLLEAPVSSVLTE 222

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            +I+     +  DE  +    Q  ++          +  H     + A  D + S+++F G
Sbjct: 223  EIEG----VFCDEFAELDRSQIALL----------EQVHQVGIPVAATADPQSSVFAFRG 268

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A+P+ V    R  +            I+L  S R TA +   +  + +    A G S   
Sbjct: 269  ADPRAVADFGRRFEV---TGLPGPERIDLSTSLRGTAGLQRGIASLIARNPVAGGGSGTR 325

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   S        V    +  +   +       +         Q++      R    
Sbjct: 326  PHEAGAVSGADRAEQIVCRSYETAAAEIAGVAEDLRTARLAGVMWSQQAVICRAGRGQLG 385

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILV-------LVRKRKDTPLITFLTRFLKNDYKISV 404
            TI+  +    I        I   +          L      +  +      L       +
Sbjct: 386  TIARGLANQGIPVEVAGSDIALSEQACVVTLMDALAVALGFSRRVPPDPDQLDRLLLSPL 445

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQ----EDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
               D   L          A               L        P           +    
Sbjct: 446  TSLDPTALRRVGGALWHEAASGTTSDPMTLVRQFLMRRAGDHLPSPVVPPATAQDVGALV 505

Query: 461  HETETVYEYIQKFANCGISKFQHVIK------------------YIHELIHIAQFCSPHD 502
            H  +T                                              I +    +D
Sbjct: 506  HRPDTSGAAPTDVTTPPTGPTAQTATSALPTDPDLEPVRELAALLGDAAARIMRGEGAYD 565

Query: 503  FFTLILGAKKGRQQFISRF------GNEVIDVLDEFLN----FTLRNEQNSYSSLQELIS 552
                +        +             +    LD  L          E       + LI+
Sbjct: 566  VLWRLWDGTDWPSRLRGEALSGSASSGQANSDLDAVLALFDVAARHMELTGQKGAETLIA 625

Query: 553  EL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            E+  ++ P    R        V+++T H AKGLE   V ++      +         +  
Sbjct: 626  EVSGQEIPGDQARESDPRGRGVQVLTAHRAKGLEWDRVIIMGAAEGSWPGNRRGAGLLSA 685

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             L D     +                     +  ++  R   +  +RA  +L+I  +  +
Sbjct: 686  ELLDADDPGLAPAPG----------------AWMQQERRAFVLAASRARKELVITANLGS 729

Query: 671  SNEKKSNQRTWYDM----------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             +E+    R   ++                    V +++   +  +      E + H   
Sbjct: 730  GDEQAQASRFVRELGGQVLAVPHDTRRPRSLQGLVGELRRVTADQRSTAGLREAAAHQLG 789

Query: 721  NTPLEREETIKQLMDEQKIPKKL---------FSPIKNDINEPY--------ILNPSTID 763
               + R++  + L+                   +P    + EP          L+ + + 
Sbjct: 790  QLAVVRDDQQRALVPGADPRSWWGLGGLSGRHGTPSPAGVGEPEGPTRDKAIRLSVTGLQ 849

Query: 764  TKGKTNLESLLS--------DNQTFNRGLIIHKLLQ-----VIFTLPEHKRKNFITSYCT 810
                   +  L                G +IH L +      +     H   +   +   
Sbjct: 850  KLIACPRQWFLDVAARGATTGGFAAGVGSVIHLLAEHAVTDHLSEDQLHDALDEAWNDLD 909

Query: 811  KNAKLW-PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID 869
             + + W    E       ITR           +     EV V        + + + G ID
Sbjct: 910  VHQQGWRTLIERSRAHEMITRFERWQGGQP--TEVLGVEVPVRHTFVIGGQPLELVGSID 967

Query: 870  QISISQ--QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            ++   +    I I ++KT    P   E        QL+ Y+  +  
Sbjct: 968  RLERDRTSGRIRIIDFKTGSRAPSRTEAASN---LQLAAYQLAVMR 1010


>gi|209523619|ref|ZP_03272173.1| UvrD/REP helicase [Arthrospira maxima CS-328]
 gi|209496024|gb|EDZ96325.1| UvrD/REP helicase [Arthrospira maxima CS-328]
          Length = 801

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 97/635 (15%), Positives = 194/635 (30%), Gaps = 71/635 (11%)

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-KMFKSTLAS 126
           L+       + T +    +    +  P+L  K+ +         D+  +  +        
Sbjct: 185 LIEGCQFDSEETEKLRRRSVLRTEVLPELAWKVIQEAKSSGLTPDQLRSLGQKIPDDYEI 244

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + +A  L  +Y++  +K   LD+E++I+    +L+       IR +  Q +  +  DE Q
Sbjct: 245 MNIAAGLYYNYQQLLQKQPFLDYEEMILGALRVLENPP----IRLRWQQRVFAVFEDEAQ 300

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQ 245
           D++ +Q ++I  L +D     N+      L  VGD  Q+I S F  A+P    +      
Sbjct: 301 DSTPLQNKLIEILAQD--SSNNSDLDNLNLVRVGDPNQAINSTFTPADPVYFRQFC---- 354

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
               N      +  +  + RS   I+   + V     +   +S+ +    R +  R    
Sbjct: 355 ---ENCEALERLATMDRAGRSNQIIIAAANFVLKWVNH--KVSQPNELPFREQEIRPVDP 409

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              Q               + E+     +              I   I ++         
Sbjct: 410 DDPQENANPNPTGKGLEIYEPENIYDTVN-------------LIVKRIISIFQQHKE--- 453

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRF------LKNDYKISVVGNDRF-ILTDHLAI 418
                       +LVR+ +    I    R         N     +   D +         
Sbjct: 454 --------GSFAILVREHRQGEFIANALRQPQEYDLEVNFSDYPITIFDAYESTRQSHIP 505

Query: 419 KDLMALGRFILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
           ++++ L +FI            LK  S        D   +  Q  +    + Y    +  
Sbjct: 506 REMLHLLQFIHRPHSPEYLKAALKVLSDRHRIPNQDFNILAAQPEQ----FLYPSPLSPP 561

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                    +    LI        ++    +  A +  +  ++       D L   ++  
Sbjct: 562 QPETVSRCRQLCCNLIKARVELPAYELIAFLALALQYEKSELAS-----ADKLATKISQK 616

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-------VRIMTVHTAKGLESPVVF 589
               Q+  + L  L   +             + +        V I+T+H AKGL+   VF
Sbjct: 617 TAGNQSLSAMLTALDEMVSSERFETIEEEENSDDSIFTRPGQVTIITMHKAKGLDWDYVF 676

Query: 590 LVDTGSQVFS-----HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
           L     ++       +  I+ +                  +  +   ++   +  K    
Sbjct: 677 LPFLHEKIIPGNLRVNPQIRFLGDFTLSEVARAQIRANLHNSQQLPDITTAWEQAKYLKT 736

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
            E  RLLYV MTRA   L +       +  +  + 
Sbjct: 737 AEEYRLLYVAMTRAKRLLWMSAAQRAPSYWRRPEN 771


>gi|269796046|ref|YP_003315501.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098231|gb|ACZ22667.1| DNA/RNA helicase, superfamily I [Sanguibacter keddieii DSM 10542]
          Length = 1124

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 113/1044 (10%), Positives = 259/1044 (24%), Gaps = 195/1044 (18%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVS----LSMETGNPTILKKAQTLQQA 56
            L++     L  +         P   F V       +     ++ TG    L   + L   
Sbjct: 86   LRDTLAARLGLTVRGAVVRTAPSAAFTVLTARAQAAGEPAPTLVTGPEQDLVLGELLAGH 145

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
            +  + ++  +                   T E+     +L++ L ++ +    +      
Sbjct: 146  AAGEGVDVGWPATVPA------------ETLELRGFREELRDLLMRAAER--GLGPEDLV 191

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCV-------LDFEDLIINTNDLLKKRDVSAWI 169
                + +      A  L   Y        +        D   ++      L+  +     
Sbjct: 192  TLGRRHSRPEWVAAGRLYEEYLAVMALRGLTPDAGERYDPAGIVDEAARTLETWEADD-- 249

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                    + +++D+ Q+ +     +   L  D             L  + D   S  +F
Sbjct: 250  ----RPRWDLVVVDDYQEATAATARLCHVLAGD----------GARLVLLADPDTSAQAF 295

Query: 230  HGAEPKRVLREKRINQ--------KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             GA P  V R    +            +       +  L   +R  A +  VV  V    
Sbjct: 296  RGATPALVGRASAGSPPTSRSLDLDAGSTGELGAQVHTLGTVWRHGAVLRDVVRSVTQEI 355

Query: 282  ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
             +   +                                        +     D       
Sbjct: 356  GSVGAVEHRRAPARSL--------------------------DAAAAAAEASDGTDSTDG 389

Query: 342  ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                A   +  +       T+ +    R      + V+ R   +        R       
Sbjct: 390  TVETAVLPSPALEEAHVAKTLRAEHLVRGTAWSQMAVVARSGSELVR----LRRALGGAG 445

Query: 402  ISVVGND-RFILTDHLAIKDLMALGRFILSQE-DDLSFVCMLKSPLFNFS---------- 449
            + V        L D  A++ L+   R   + +      V +L SPL              
Sbjct: 446  VPVAVVGTDVPLRDEPAVRPLLRALRASATGDLAPEVAVELLTSPLGGIDAVGLRRLRRA 505

Query: 450  -EDDIFKICTQRHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHI-----AQF 497
               +       R     + E +   A         +   + V + +           A  
Sbjct: 506  LRGEELAGGGGRTSDALLVEALGDPARVVTLPSDVVRAPRRVARVLEAGRTALEAPGANA 565

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVI------DVLDEFLNFTLRN-EQNSYSSLQEL 550
             +            +  +      G          D +           E+   ++    
Sbjct: 566  QTVLWALWAAADVAETWRSIAVNGGPGAARADRDLDAVMAVFRAAETFVERVPQATAVAF 625

Query: 551  ISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
               +E            +A  + V+++T   A G E  VV +       +    ++   +
Sbjct: 626  ADHVESQDLPADTLAKGAAASDTVQLLTPAGAAGGEWEVVVVAGVQDGTWPDLRLRDSML 685

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                  D    +   +S+   +   D      ++   +  R   V ++RAS +L++    
Sbjct: 686  GSQALVD----VLSGRSQDATSTGRDAR----RAVLADELRAFAVAVSRASRRLVVTAVR 737

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE-------- 720
            +  +E       + D+V       +          ++    ++   +             
Sbjct: 738  DVDSE----PSVFVDLVSPDDDGSDTEPPDVFAAPLDLRGVVSTLRTELAAALSMDGAAG 793

Query: 721  --------------------------------------NTPLEREETIKQLMDEQKIPKK 742
                                                                      + 
Sbjct: 794  SAGSAGSAGSAGSAGSEGAARTAAPASTARAASVAGLLARLAGAGVGEADPTSWYGSAEL 853

Query: 743  LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN-------RGLIIHKLLQVIFT 795
                     +E   ++PS ++   +  L   L               G ++H + + +  
Sbjct: 854  STPAALRAPDETVPVSPSKVEQVHRCALRWALESAGGTAGSALSQSVGNLVHDIARELPA 913

Query: 796  LPEHKRKNFITSYCTKNA--KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                +    +     +      WPA + +    ++ R      +    +  S  EV V  
Sbjct: 914  AGHAELAAELDRRWHELGMPDGWPATQTRRRADAMVR-----RLADYYTEISG-EVLVEE 967

Query: 854  KINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                     ++ G +D++    +  + + + KT   +P   E       AQL  Y+  ++
Sbjct: 968  SFEVQVGRAVLRGSVDRLERSGEDGVRVTDLKTGRGIPSVAEAATN---AQLGAYQLAVE 1024

Query: 913  -----DSYPN-KSLVCLLIYVSEP 930
                 +  P  +S+   L++V + 
Sbjct: 1025 SGAFPELGPGVRSVGAQLVFVGDG 1048


>gi|222637066|gb|EEE67198.1| hypothetical protein OsJ_24304 [Oryza sativa Japonica Group]
          Length = 1186

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 95/551 (17%), Positives = 171/551 (31%), Gaps = 119/551 (21%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
             K+K KK Q    + +    T + ++           +  HY E  +    LD+ D I 
Sbjct: 430 SFKDKAKKWQKFVTQAKASGRTPEEYEKKGDL--TGASILRHYNEILRSCNALDYHDFIN 487

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
           ++  LL K      +  +       I++DE QDTS +Q+ ++++L               
Sbjct: 488 SSITLLTKFPE---VYDECRNTWQAIVVDEFQDTSAMQYYLLKTLAS-----------HN 533

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGDE QSI+SF+GA+       +R               + L  ++RST  I+   
Sbjct: 534 RITIVGDEDQSIFSFNGADVSGFDSFRRDFPNH--------KEVRLSKNYRSTRAIVEAA 585

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             +       Q           H+ +        ++  +     DS              
Sbjct: 586 TALIHNNTKRQS----------HKLAETDNPSGNKIIVKECHSEDS-------------- 621

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                        + A+ I  +I T +    G         I VL R++          R
Sbjct: 622 -------------QCAFVIDKIIETTSSSVEGCH----FGKIAVLYRRQITGKAFQASFR 664

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
             K  + I               IK +MA+ +  L   DD +        +    +++  
Sbjct: 665 NRKIPFNIH-----GVAFYRKKVIKAIMAILKTTLPGCDDDAPWHQAFKAILPGDKEEKK 719

Query: 455 KICTQRHE-----------------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
           KI     +                 +  V    ++       K    +  + +L+   Q 
Sbjct: 720 KIIHHIEKISLARKCSFISAATDIFSAKVSGTFKRAQITQGRKVLSALDSLSKLVEREQS 779

Query: 498 CSPH-----------DFFTL--ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN----- 539
            S                    I+ A  G  + ++   N++  VL   ++          
Sbjct: 780 VSVVISSAGDMLPQKYLLEKRAIVDADGG--KLLNE-DNDIRSVLQFLMDDVSDFLSTHF 836

Query: 540 ----------EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVV 588
                     E+   S+L+  I  +        R     N N + + T+H +KGLE  VV
Sbjct: 837 SSSVDTSKTEEKGCASTLKAFIDYISLRETENFRSRKEENKNSITLTTIHQSKGLEWDVV 896

Query: 589 FLVDTGSQVFS 599
           F+V        
Sbjct: 897 FIVQANDSEIP 907


>gi|66360164|ref|XP_627217.1| UvrD like super family I helicase involved in nucleotide excision
           repair, possible bacterial horizontal transfer
           [Cryptosporidium parvum Iowa II]
 gi|46228624|gb|EAK89494.1| UvrD like super family I helicase involved in nucleotide excision
           repair, possible bacterial horizontal transfer
           [Cryptosporidium parvum Iowa II]
          Length = 917

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 94/624 (15%), Positives = 189/624 (30%), Gaps = 135/624 (21%)

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
           ++D+ DLI    +LL+       IR KI     +I  DE QDTS +Q++++  LT+    
Sbjct: 300 LVDYTDLITLALNLLENNI---NIREKIQDSYPYIFCDEFQDTSKLQFKILELLTKSIIN 356

Query: 206 ----------GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
                      ++ +     +  VGD+ Q+IYS+ G E     R   + +          
Sbjct: 357 KKRKFEAEKFTRDQNLRRGGITVVGDDDQAIYSWRGVETGVFSRFSSMFKDNIN------ 410

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +I L  +FRST  I+ V + +    +        S                +     + 
Sbjct: 411 -LIYLSTNFRSTKSIIQVSNNLVKKNKFRISKLLISNNDFGVEPVVYYFPKQIDEMHWIA 469

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT------ISNMIGTDTIFSNGKKR 369
           S           SW+ +        +   + + ++        +  +  T+ I +     
Sbjct: 470 STILLLKMKFNYSWSEFAILARTNDTLFYVEKLLSDKKFLISCLEMLQDTENINNERGWF 529

Query: 370 VIQAK---DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            + +    D  +    R  +  ITF               +D   L     I D+++  R
Sbjct: 530 KMISNDLLDFDIDQLSRYKSAEITFPLE--NTSRNNPKFASD---LLYRAEILDILSYCR 584

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY----------------- 469
            ++ +  D  F+ +   P     ++ I  I     +  ++                    
Sbjct: 585 LMIDETADDCFLRICNRPKRGIGDNAIKLIEEYGAKGISLMRKSTQPLNGICELDTSVYG 644

Query: 470 ---------------------------IQKFANCGISKFQHVIKYIHELIHIAQFC-SPH 501
                                        K     I+  +  + ++ +L    +   S  
Sbjct: 645 NTTNVYTSIVSVCRMLVSSKFETKSKINYKLHKKSINSIKAFLDFLDDLKQFIKNKVSVS 704

Query: 502 DFFTLILGAKKG---------RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
           +   LI+              + +      + ++D ++     + +      S+L  + +
Sbjct: 705 EIINLIVKKMNLDNQNEIMVKQSKNKRLLQSNLVDNINSNTEDSEKINSRKLSTLSSIST 764

Query: 553 ELEQYPPTIKRAHSA---------------------NHNEVRIMTVHTAKGLESPVVFLV 591
            L+   P                                ++ + T+H AKGLE  VVF+ 
Sbjct: 765 LLKYSEPYTPNDEQPTGYECLLCFLQDASNGLLQIKKGEKISLSTIHRAKGLEWKVVFIP 824

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               +VF                             R +   ++     + T EE  R++
Sbjct: 825 KFVDKVFP--------------------------LYRESENLEIKNEFDEITIEEERRIV 858

Query: 652 YVGMTRASDQLIICKHSNTSNEKK 675
           YV  TRA ++L +    N      
Sbjct: 859 YVAFTRAKERLFVSVPLNVGKPSP 882


>gi|256374999|ref|YP_003098659.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919302|gb|ACU34813.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 1050

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 109/948 (11%), Positives = 250/948 (26%), Gaps = 154/948 (16%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
              V  ++ Y    +        +    L   +  +       L++           + +
Sbjct: 103 EPLVRTVHSYAFAVLRARAVRDGEPPPRL--LAGPEQDAVVRELITGDVEAGARDWPERL 160

Query: 85  ITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE--AK 141
                +   + +L++ L ++ +  +   D     +           A      YE+    
Sbjct: 161 RPALALPGFAGELRDLLLRAVERGLAPEDLVALGEGHGRDE--WVAAGLFGEQYEQVSLL 218

Query: 142 KKNC---VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                    D  +L+ N     +  +    +       + H+ +D+ Q    +Q  +IR+
Sbjct: 219 ASQGLAPAYDAAELVDNALLAFENDEE---LLSGERARVRHVYVDDAQHLDPLQHALIRA 275

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           +           S+       GD  Q+++SF GA+P+ ++                   +
Sbjct: 276 V----------GSAADEFLLFGDPDQAVFSFRGADPRLLVD-------------GDSPQV 312

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L  S R  + +                              R    G            
Sbjct: 313 VLSRSHRLPSAV------------------------------RAATAGLASRLPGASPAR 342

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
           +     +          +   +S +  A  +A  +                 +    + V
Sbjct: 343 EVSPVGEGG-----TTQVRLFASEAQEASWVADRLRR---------AHLVDGVPWSRMAV 388

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE--DDLS 436
           +VR    T  +  + R L        V      L    A+  L+AL R        D+ +
Sbjct: 389 VVRS--ATRSLPVIQRALLAAGVPVAVPGTDLPLARQPAVTPLLALLRCAAVPGSLDEDT 446

Query: 437 FVCMLKSPLFNFSEDDIFKIC-----------TQRHETETVYEYIQK------FANCGIS 479
              +L SPL       + ++              R   E + E I+         +   +
Sbjct: 447 AAMLLSSPLGGADPLALRRLRRGLRRLEIAAGRDRPSGELLVEVIEDRDRLAALEDAESA 506

Query: 480 KFQHVIKYIHELIHIAQFCSPHD-FFTLILGAKKGRQQFIS------RFGNEVIDVLDE- 531
             + V + +       +  S  +     +      + ++++        G +    LD  
Sbjct: 507 PARRVARLLRTARDSIRRGSSVEVVLWDLWQDTGLQDRWVAMSSRHGTTGMQADRDLDAV 566

Query: 532 ---FLNFTLRNEQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESP 586
              F       ++   +S       LE          A +     V ++T H + G E  
Sbjct: 567 VALFETAAKYVDRLPGASPDGFADYLEAQHIVGDTLAAAAPVGEAVAVLTAHASAGQEWE 626

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VV +       +    ++   +      D    +    S     +  +    L       
Sbjct: 627 VVAVPGVQEGTWPDLRLRGSLLGVERLVDLVSGVGAGASAVAPLLAEERRLLL------- 679

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                 V  +RA   L++        +         D             +  L  +   
Sbjct: 680 ------VATSRARRVLLVSAVRGEDAQPSRFLDELEDAGEGETERRITPPERGLVLAELV 733

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMD----------EQKIPKKLFSPIKNDINEPYI 756
            E           E+        + +L               +                 
Sbjct: 734 GELRRVVCDPGESEDRRDRAATQLARLAADGVPGAHPDTWYGLAPVTTDVPLWTEEHTVS 793

Query: 757 LNPSTIDTKGKTNLESLLSDNQTFN-------RGLIIHKLLQVIFTLPEH----KRKNFI 805
           ++PST++T  K  +  ++  +   +        G ++H L Q   +        ++ +  
Sbjct: 794 VSPSTVETLSKCPVRWVVERHGGQDPAELASITGTLVHALAQAAASGAGEAELKEKLDEA 853

Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD--II 863
            +     A  +  +E   +   +   L     +         E  +S  +   +    + 
Sbjct: 854 WTAVDAGAPWFSRRERMRVERMLDAFLAWLSASRGQLTQVSVEEEISVDLPKVEGGPRLK 913

Query: 864 ISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
           + GR+D++         + + KT        +        QL++Y+  
Sbjct: 914 VRGRVDRLETDRDGRPVVVDIKTAKTPVSRKDAQE---HPQLAVYQLA 958


>gi|113476147|ref|YP_722208.1| UvrD/REP helicase [Trichodesmium erythraeum IMS101]
 gi|110167195|gb|ABG51735.1| UvrD/REP helicase [Trichodesmium erythraeum IMS101]
          Length = 808

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 90/577 (15%), Positives = 176/577 (30%), Gaps = 81/577 (14%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           LT+A  L   Y++  K++ ++D++++I+    +L+        R      +  +  DE Q
Sbjct: 245 LTIAASLYQTYQKILKEHQLIDYDEMILAALRVLQNESA----RKMWQNRVFAVFEDEAQ 300

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHS-------------SPRTLFAVGDEKQSIYS-FHGA 232
           D++ +Q +++  L        +  +             S   L  VGD  Q+I S F  A
Sbjct: 301 DSTPLQTKLLEILATSSEYNDSNLNCNLISQYQRLSKLSHLNLMRVGDPNQAINSTFTPA 360

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +P    R             Q   +  +  + RS   I+   + V     N +    +  
Sbjct: 361 DPIYFRRFCED-------CEQLKKMAVMEQAGRSCKIIIDAANFVLKWVNNLKLAGNE-- 411

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                +  R   +  V+  E+    +++   P         +      +  ++ +RI   
Sbjct: 412 -----KPFRDQNIQPVE--EKESGNNNNNNPPAIGGGLEIHEPDNIYQTLELMGKRIISL 464

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF--------LKNDYKISV 404
                                    VLVR+ K    I                  Y I +
Sbjct: 465 FKE---------------NPQGKFAVLVRENKQGKFIADTFSNPGKYGVDIDLGKYGIKI 509

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
               +      +  ++++AL +FI            LKS L       +           
Sbjct: 510 HDVSQGARPSQIP-EEILALIQFIHRPHSPDY----LKSALKVLGNHKLIPQQDYNSFAS 564

Query: 465 TV--YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            +  + Y          K +    +   L+        ++  + +       Q  ++   
Sbjct: 565 QLEKFLYPGPLDPYQSEKVRECRNFCRSLLRAKSELPLYNLISFLALVLNYEQSDLATAD 624

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-------VRIM 575
                V             +S +++ E+++E+             N ++       + I+
Sbjct: 625 KLAERV------AKQTAGNSSMNAILEVLNEIVSSERFESVEVGENADKYYTRSEQITII 678

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHK----HIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           T+H AKGL+   VFL      +           K      L +     I     +     
Sbjct: 679 TMHKAKGLDWDFVFLPFLHENIIPGNLRVLPQAKFLGDFDLTEVARAQIRASLQQENFPD 738

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
           +S   +        E  RLLYV MTRA   L +    
Sbjct: 739 ISKAWEQAGYLKMAEEFRLLYVAMTRAKQLLWMSAAK 775


>gi|331694961|ref|YP_004331200.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949650|gb|AEA23347.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 1106

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 112/1036 (10%), Positives = 257/1036 (24%), Gaps = 144/1036 (13%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKA------QTLQQA 56
             R    + E    +       P     ++      S   G   +          + L  A
Sbjct: 70   RRAAADMRERLTPLLHPHGGDPESTTRELLVRTVHSYAFGVLRLHAARHGDPPPRLLAGA 129

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
             Q   + E  +            P +      +   + +L+E L ++ +    +      
Sbjct: 130  EQDVVVRELLAGEIEGDAPDSGWPDRLRPALGLPGFAAELRELLLRAAER--GLGPEELF 187

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKNCV------------LDFEDLIINTNDLLKKRD 164
                +  +     A      YE+                   LD  +L+    D      
Sbjct: 188  ALGERHGVDEWRAAGRFFRVYEQVVLLRGAAGRGAPQATAPALDSAELVAAALD---TLA 244

Query: 165  VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                +R    + + H+ +D+ QD    Q E++ +L           S+  T    GD  Q
Sbjct: 245  ADPDLRAAEQRRVRHLFVDDAQDLDPQQLELVATL----------GSTASTTLLAGDADQ 294

Query: 225  SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            ++ +F GA+P+ +   +                + L +  RS A +     ++ +    A
Sbjct: 295  AVLAFRGADPQGLRAVE-------------AETVVLDVDHRSRAAVRAATGRLAARLPGA 341

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                      +R  +      G V +        ++     +       D +P    A +
Sbjct: 342  G------AGRVRVAAGPEDDEGQVLVRVFGSVAAEAAWIADRLRCAHLVDGVPWSEMAVL 395

Query: 345  ---LARRIAYTISNMIGTDTI---FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                 R +      ++          +      Q   + +L+  R  T            
Sbjct: 396  SRSTRRSLPALRRALVAGGVPIVAPPDELPLARQPAVVPLLMVLRAATRPEELDADAAAA 455

Query: 399  DYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
                 +   D   +      +  L A                 L          D   + 
Sbjct: 456  LLTSPLGSGDPMRMRRLRRGLLRLRAAAEPDPPAAHATGGTAALADVGAERVSSDPLLVE 515

Query: 458  TQRHETETVYEYIQKFANCGISKFQHV-IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
              R       + +        +  + V               S  +    +        +
Sbjct: 516  ALRAAAAGEPDPLAALPPSETAPLRRVGALLATAAAAARDGASVEEVLWQVWQQTGLADR 575

Query: 517  F---------ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPP--TIKRA 564
            +              +  +D +    +   R  ++   + +      L            
Sbjct: 576  WSAASGRGGPAGAAADRDLDAVLALFDAAARYSDRLPGADVAGFTDYLADQQLPTDSLAP 635

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             +   + V ++T H A+G E  VV +       +    ++   +      D    +  P 
Sbjct: 636  RAPGGDAVALLTAHAARGREWRVVAVPGVQEGSWPDLRLRGSLLGNERLVDLLAGVAEPD 695

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                                 E  RL YV  +RAS  L++        +          +
Sbjct: 696  GSV----------SRVAPLLAEERRLFYVACSRASHTLLVSAVQGEDEQPSRFLDELDPL 745

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI-------------- 730
               +   + R       + +  +       +   P + P                     
Sbjct: 746  --PAGAAETRTVHRPGRSLVLAELVGELRRAVCTPGDEPAAVARRERAAAQLARLAADGV 803

Query: 731  --KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ-------TFN 781
               +  +   +             E   ++PS ++      L  +L  +           
Sbjct: 804  PGARPDEWYGLAPVSTDAPLRVPGEVVPVSPSDVERIVACPLRWVLERHGGGDVGALAAV 863

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITS----YCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
             G ++H L+Q      +             +    A  +  +E + +   +    +    
Sbjct: 864  TGSLVHALVQASAAGAQPAELEDALRSAWSHLDAGAPWFGRRELERVRAMLAAFDDWVRT 923

Query: 838  TTAMSCDSYS-EVSVSGKINCPKK-----------------DIIISGRIDQISIS-QQNI 878
            +        + E  V   +                       + + GR+D++ +  +   
Sbjct: 924  SRDQGLRLVAVEQPVRLDLPVEGDLPPDGSAQPEVGRSGGPWLQLRGRVDRLEVDSEGRP 983

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK-------SLVCLLIYV---- 927
             + + KT       +         QL++Y+         +            L+Y+    
Sbjct: 984  VVVDVKTGKTA---VSARAAAEHPQLAVYQLAAALGAFGRLLEKGVTPGGARLVYLADRK 1040

Query: 928  SEPKVFIIPQNKLNKA 943
            +  +     Q  L+ A
Sbjct: 1041 ASGQAKEPSQPPLDAA 1056


>gi|170782257|ref|YP_001710590.1| putative DNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156826|emb|CAQ01993.1| putative DNA helicase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 640

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 92/609 (15%), Positives = 178/609 (29%), Gaps = 151/609 (24%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL--AKYL 133
              + +  + T  +     D+  +++  +   I + +     +  ++    L    A  L
Sbjct: 164 AAESLRLRLDTAALR----DMAAEVEWRKVSMISVEEYGLAARTSRTLPPQLDADQAVAL 219

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K +   LDFED+++ T  +++      W+  ++ ++    ++DE QD S +Q 
Sbjct: 220 LQAYEDIKDQRRQLDFEDVLLATAGMIEAEP---WVAQQVREQYRFFVVDEYQDVSPLQQ 276

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            ++     D           R L  VGD  Q+IYSF GA+   +L               
Sbjct: 277 TILDLWMGD----------RRDLCVVGDASQTIYSFAGAKSAYLLDFASRFP-------- 318

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
           + +++ L  ++RST+ I    +++      A  L       +   +   G          
Sbjct: 319 EATVVRLERNYRSTSGITEAANRLMRGRPGALTL-------VSADADPDGDGTGASSARA 371

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
              +  +    + E + +    +    S    AR IA  I+  I +           I  
Sbjct: 372 TKGRGSAAVPGRGEGFRAP--QVSAFPSDGAEARAIAGAIAQQISSG----------IAP 419

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           +DI VL R    + ++         D  +S          D   IK  +   R       
Sbjct: 420 EDIAVLYRMNGQSAVLEQAL----GDAGVSYQVRGSQRFFDRPEIKQALLALRGASVSIS 475

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
                  +   L                                    +   + +  ++ 
Sbjct: 476 GEPLFKSVSDVLRGLGWSQ--------------------QPPEQQGAVRDRWESLDAIMG 515

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
           +A+                         G+      DE L                    
Sbjct: 516 LAERMPA---------------------GSTFRAFTDELLER------------------ 536

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                      H    + V + T+H+AKGLE   V+L+     +                
Sbjct: 537 -------QAGQHEPTVSAVTLATLHSAKGLEWEHVYLMGLSEGLVP-------------- 575

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                +         +E  RLLYVG+TRA   L +    +  + 
Sbjct: 576 ---------------------ISYAQTLEAVDEERRLLYVGITRARSGLRLSWSRSGPHR 614

Query: 674 KKSNQRTWY 682
               + + +
Sbjct: 615 SGQREPSRF 623


>gi|160933915|ref|ZP_02081302.1| hypothetical protein CLOLEP_02777 [Clostridium leptum DSM 753]
 gi|156866588|gb|EDO59960.1| hypothetical protein CLOLEP_02777 [Clostridium leptum DSM 753]
          Length = 1078

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 106/676 (15%), Positives = 192/676 (28%), Gaps = 159/676 (23%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +  E  + + K   P        I  + SL +        K    L+         E   
Sbjct: 521  AAGELRQRL-KYALPAKAANAVHIGTFHSLCL--------KLLTGLRGKVTLAGEAEALD 571

Query: 68   LLSSFF--LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            + S     L  K +P++      + ++    K    +   E       +      +  L 
Sbjct: 572  IASQVLRPLGLKLSPRR------LLQEVSKWKNGFSEEALEHPGACQEYCRRLSERKLLD 625

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
               L   +   YE                      +  D          +    IL+DE 
Sbjct: 626  FDDLLLEVLREYE----------------------RDPDAFP------SKPFRQILVDEF 657

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QD + +Q++++R  ++              LF +GD  QS+Y F G++P    R +    
Sbjct: 658  QDCNAVQFKLLRYWSK----------KNGRLFVIGDPDQSVYGFRGSDPACFKRLQEEYP 707

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                    +   + L  ++RS+ +IL+    V S                          
Sbjct: 708  --------ELQAVRLKTNYRSSPEILSCALPVISHNP----------------------G 737

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
            G  +L      Q   +  P +   +                  IA  I+ M+G   +   
Sbjct: 738  GKRELEAFRPPQGAVRFLPCENGLSQGI--------------AIAKEINAMVGGIDMLDA 783

Query: 366  GKKRVIQ------AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                  Q        +I +L R   +      L         I  V   R     H  ++
Sbjct: 784  QSCVSSQRETSRDFSEIAILYRTHHEA----ELLEKCLQRESIPYVVAGREDFLRHDKVR 839

Query: 420  DLMALGRFILSQEDDLS---FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
             L    +F+   +D  +    + +L S   + SE     + + +  +      + +    
Sbjct: 840  GLTCFFQFLSEPDDLTALAVCLKLLFSCPEDLSESLQRFLSSYQGYSLPKKLELLENEYR 899

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
             +      +     +  + +   P                       E    + + LN  
Sbjct: 900  NVGVLTVSLPLFRSIYPLLEKKKPAKLLETA----------ALELSLEQEPAVQKLLNTA 949

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                + S   L   +   ++   T     +   + V + T+H +KGLE PVVFL      
Sbjct: 950  SFYSKTSE--LLAQLILGQESDLTRSCKKNRFSSAVTLTTLHGSKGLEFPVVFLCGVNQG 1007

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                                                  L    +  + EE  RL YVGMT
Sbjct: 1008 NLP-----------------------------------LEAQGRMQSIEEERRLFYVGMT 1032

Query: 657  RASDQLIICKHSNTSN 672
            RA D+LI+    + S 
Sbjct: 1033 RAKDELILLSSDHPSP 1048


>gi|315635997|ref|ZP_07891257.1| ATP-dependent DNA helicase UvrD [Arcobacter butzleri JV22]
 gi|315479718|gb|EFU70391.1| ATP-dependent DNA helicase UvrD [Arcobacter butzleri JV22]
          Length = 513

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 89/580 (15%), Positives = 179/580 (30%), Gaps = 108/580 (18%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + + +   + E K K   ++F+DL+     +LK++D               IL+DE QDT
Sbjct: 2   IYEDVVDEFNELKTKYGYVNFDDLLTTMLKILKEKDFD----------FKEILVDEYQDT 51

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q  ++ S              P++LF VGD  QSIY+F+G++   +       +   
Sbjct: 52  NPLQGRLLDSF------------RPKSLFCVGDYDQSIYAFNGSDIGIISTFSTRYKN-- 97

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  ++  L  ++RST  IL +  KV    E       +     +    +   +   
Sbjct: 98  ------ANVFTLRKNYRSTKPILDLATKVIEFNERVYEKKLEVVR--KEDIYKPKLLAFN 149

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L+ Q           Q              S+  I A    + I+        F +  +
Sbjct: 150 ELFSQYEYISQLISKSQTPHSEIAIIYRNNSSADGIEANLREFGIAAKRKGGMSFFDSVE 209

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 DILV+     D      +      ++   +       + D L       + R +
Sbjct: 210 VKFIL-DILVMQVSHNDMMAFIHIV-----EHGKGIGKAIAKDIFDALIKLGDGDIIRGL 263

Query: 429 LSQEDDLS--FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---- 482
                D+S  +   +K+      +D I      + +     E           K      
Sbjct: 264 FQPRIDISNPYETKVKNQQLGLFDDFIELGSISKFKDCNFEETFLSNPILKHPKLSVDGG 323

Query: 483 ----HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE------- 531
                +   +  L       +     +  +   K +    ++   +    +++       
Sbjct: 324 KYLYDIYLLLKHLRRTKIPETLVASISSSMAYSKLKDFLATKRATQKDGTINDIQKTKAL 383

Query: 532 ---------FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
                      N          + L + I+ +      +     +    V ++++H +KG
Sbjct: 384 AKINRKAMLLKNLARNF-----NDLSKFINSMILGGSEM-----SEGEGVNLLSIHASKG 433

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   V+++D     F ++                                      K  
Sbjct: 434 LEFKEVYVIDLMDGRFPNR----------------------------------KLMSKGG 459

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
           + EE  RL YV +TRA D L +        +K +   + +
Sbjct: 460 SLEEERRLFYVAVTRAKDILYLSYAKYDKIKKMTFVASPF 499


>gi|298707412|emb|CBJ30041.1| DNA helicase II [Ectocarpus siliculosus]
          Length = 1317

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 98/762 (12%), Positives = 197/762 (25%), Gaps = 189/762 (24%)

Query: 2   KNRFGLSLNESYE--LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           +  FGL +    E   +   +         D    ++ +   G+                
Sbjct: 241 RATFGLDMIGHAEQVDLVARILADSDRGGWDSRDDLAAASYKGDAAFEGPWSATAGGRSN 300

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                               P K    +E  ++  +L+ + K         +++  T + 
Sbjct: 301 GSWGMP--------------PTKEERGKETAQRRKELETRAKTVLSRIGVWKEQGITVEE 346

Query: 120 FKST-----LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            +ST       +   A  +   Y++  ++   +DF DL +   +L  +      +  +  
Sbjct: 347 HRSTNMEADDYTDAAAAAVYPSYQQHLRRRRQVDFGDLCLMVTELFTRHPE---VLERYR 403

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVG---------------------------- 206
               H+L+DE QDTS  Q  ++++L                                   
Sbjct: 404 WRFRHVLVDEYQDTSPAQQRLLKALVSGVPSKRRAASATPASISPDPAVAIGEGGDGECF 463

Query: 207 -----------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
                      ++      +LF  GDE Q IY + G     + R +              
Sbjct: 464 GAAGTGKSEGLEHHQGLGVSLFCAGDEDQHIYGWRGTTVDHLHRFEEDFP--------GA 515

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L  + R    +L     +                            G V L     
Sbjct: 516 VRCALTETHRLPVHVLRSATGLMR------------------------AGGLVPLL-NRR 550

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
            +               ++S  +    ++ A ++                   + I  KD
Sbjct: 551 MRTKQHTPGAVVRAQGLWNSREEGKWVALEASKMNRE----------------QGISYKD 594

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           + V+ R   +T  +            +               ++  +AL     + +DD 
Sbjct: 595 MAVIARTAYNTRELEEALAA----RGVPYTVEGGSSFFSRGEVQAPLALLALCANPQDDE 650

Query: 436 SFVCM--LKSPLFNFSEDDIFKIC----TQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +F     L+S            +         +  +  E ++   + G+ K +    +I+
Sbjct: 651 AFRRFISLRSKTRLLDWATPSTMRGVGELAVADGVSYAEGVRLSVSRGLLKGEDSSNFIY 710

Query: 490 ELIHIAQFCSPHD---------FFTLILGAKKGRQQFISR--------FGNEVIDVLDEF 532
            L   A                    I        + +           G    + + + 
Sbjct: 711 GLRRWASLLMGWQRLHEAERGAAVWRIFWEAGFLPRPVDASFAPHRGGGGGPDQESIGKL 770

Query: 533 LNFTLRNEQNSYSSLQELISELEQYP-----------------------PTIKRAHSANH 569
                R +      L+   +  E                             +    ++ 
Sbjct: 771 ATAASRCDHIGRFLLRAARAREETANKKAARKGGEGRGRGGRWEGTTGKKDKQSTTPSSE 830

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + + +MT+H AKG E  VVFL       F         ++P+  D               
Sbjct: 831 DALEMMTMHQAKGREFKVVFLTGWDEGSFP--------LLPNSGDGEHAV---------- 872

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                          +E  RL YV +TRAS+ +II       
Sbjct: 873 ---------ESLERVQEERRLGYVALTRASENVIITFSKKRR 905


>gi|212696571|ref|ZP_03304699.1| hypothetical protein ANHYDRO_01109 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676427|gb|EEB36034.1| hypothetical protein ANHYDRO_01109 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 600

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/556 (16%), Positives = 175/556 (31%), Gaps = 118/556 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K +   YE  KK+  +LDF+D+ +              +   I  +  +  +DE QDTSL
Sbjct: 155 KEIYQTYERIKKEKHLLDFDDMQVYALK----LLDDKSLLRSIKNKYKYFQLDEGQDTSL 210

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q++++  +                L  V D+ QSIYSF  A+PK +L  K+I       
Sbjct: 211 LQFKILEKIV----------YPENNLLVVADDDQSIYSFRAADPKYLLNFKKIY------ 254

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +   II L  + RS   I+++     +  +N    +                      
Sbjct: 255 --KDAKIISLDTNHRSGKKIISLASSFINQNKNRYKKTYK-------------------- 292

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                              +  FD   +        ++  Y I N+    T         
Sbjct: 293 ------------------LSRDFDDKIEIKEFKNFTKQYDYIIENLDNKKT--------- 325

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R       ++        D+ I+    D     +     D++ +  F  +
Sbjct: 326 ------GILFRNNISAISLSSYLLDKNIDFSINSNILD---FFESKIFTDMVNIINFSEN 376

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIH 489
            ++   F  +        S+DDI  +     +E    +       +       ++ K + 
Sbjct: 377 FDNVEIFSDIYYKISTYLSKDDIESLSHKAINENIFDFYENSDIEDYKKDALFNIEKKLK 436

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            + ++         +  +           SR   E     D ++       +    S + 
Sbjct: 437 HIRNLKIEKKISFIYKSLSYDS--YINMKSRKYMEETVNKDVYIESLSYFAK----SCES 490

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L    ++     K++ S     + + T+H++KGLE   VF++D     F           
Sbjct: 491 LGELYDKINILEKKSKSLVKTNLSLSTIHSSKGLEYDKVFIIDLIKNEFPLIMD------ 544

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                      +       EE  R+ YVG+TRA D L I    N
Sbjct: 545 ---------------------------EENYFERLEEERRIFYVGLTRARDDLHILTLKN 577

Query: 670 TSNEKKSNQRTWYDMV 685
            +N+K    + +   +
Sbjct: 578 RNNKKVYPSKFYTTSL 593


>gi|329939653|ref|ZP_08288954.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329301223|gb|EGG45118.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 742

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 96/653 (14%), Positives = 180/653 (27%), Gaps = 162/653 (24%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   YEE K+   V+DFED+++ T  +L+       +  ++  +  H ++DE QD S 
Sbjct: 187 AKLYEAYEEIKRDRAVIDFEDVLLLTVGILQD---RRDVAEQVRAQYQHFVVDEYQDVSP 243

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++     D             L  VGD  Q+IYSF GA P  +L  +         
Sbjct: 244 LQQRLLELWLGD----------REDLCVVGDASQTIYSFTGATPDHLLDFR--------V 285

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++++L   +RST  ++ + + + S           +   +   S R         
Sbjct: 286 RHPGATVVKLVRDYRSTPQVVHLANGLLSQARGR-----AADHRLELVSQRPAGPEP--- 337

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                            S+  Y D   +       A   A  I  ++ +           
Sbjct: 338 -----------------SYADYADEPSE-------AEGAARHIRALLDSG---------- 363

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           + A +I +L R    +            D  I           D   ++  +   R    
Sbjct: 364 VPAAEIAILFRTNSQSETYEQAL----ADAGIPYQLRGAERFFDRPEVRRAIHALRAAAR 419

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              + S              DD+  + +Q     +  E        G    +   + +  
Sbjct: 420 FGGNDSR------------LDDVVDLPSQVRAVLS-GEGWAGEPPAGSGAVRERWESLAA 466

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQE 549
           L                                         ++            +L +
Sbjct: 467 L-----------------------------------------VHLAQDFATVRADVTLGD 485

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           LI+EL++               V + ++H+AKGLE  VVFLV     +            
Sbjct: 486 LITELDERAGAQHAPTVQG---VTLASLHSAKGLEWDVVFLVGVAEGMMP---------- 532

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-- 667
                                    +         EE  RLLYVG+TRA ++L +     
Sbjct: 533 -------------------------ISYARTDEQIEEERRLLYVGVTRARERLFVSWALS 567

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
            +           + D +                +   +  + +            +   
Sbjct: 568 RSPGGRPSRRPSRFLDGLRPGSTATGGRSGGPGGSGGVERGFGSAGGRGGAAGAGAVPTA 627

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
              ++ +   K+  +  +             PS +D      L    +     
Sbjct: 628 RRTQRTVARCKVCGRTLTDAGEMKLMRCEDCPSDMDEGLYERLREWRAVQAGR 680


>gi|283457709|ref|YP_003362295.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133710|dbj|BAI64475.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 639

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/546 (15%), Positives = 156/546 (28%), Gaps = 141/546 (25%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   YE+ K +  ++DFED+++ T  +L++ +    +   +  +  H ++DE QD S 
Sbjct: 184 QRIFQAYEDLKDERNLIDFEDVLLLTIAMLEEDE---KLAATVRNQYRHFVVDEYQDVSP 240

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++                   +  VGD  Q+IYSF GA  + +L   R  +     
Sbjct: 241 LQQRLLDVWLG----------GRDDICVVGDASQTIYSFTGATSRYLLDFARRYR----- 285

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  ++L   +RS + ++ + +++ +                   + R     +   
Sbjct: 286 ---GAHTVKLTRDYRSHSQVVELANRLLA-------------------ARRPHPDSSPHS 323

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W   +     +       W  Y D           A  IA  I ++I  D          
Sbjct: 324 WAPPLELMSQRGPGVDVEWFGYAD-------DEQEAAGIAEDIRDLIEKD---------G 367

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +   +I VL R    +  I            I           +   +K  M   R    
Sbjct: 368 VPPSEIAVLFRTNAQSAAIESA----LAAAHIPYQLRGAERFFERPEVKQAMLALRGSAK 423

Query: 431 QED-DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             D         +  L      +   +       +  +E +    +      QH  + + 
Sbjct: 424 STDGTEDVTRYTRDVLGGLGYKEEGPLSGGATRQK--WESLAALVHMVDMMAQHRQEQLQ 481

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           E     +   P                                             ++ E
Sbjct: 482 EHRANPRPGVPEPL----------------------------------------PLTMHE 501

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           +++ L           +   N V + ++H AKGLE   VFL      +            
Sbjct: 502 VVATLNHRSE---FNDAPQVNGVTLASLHAAKGLEWDAVFLCGLNEGLMP---------- 548

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                    +         +E  RLLYVG+TRA   L +     
Sbjct: 549 -------------------------ITFATTPDEVDEERRLLYVGITRARKYLWLTWTMT 583

Query: 670 TSNEKK 675
            +   +
Sbjct: 584 RTVGGR 589


>gi|227494824|ref|ZP_03925140.1| ATP-dependent DNA helicase (UvrD/REP) [Actinomyces coleocanis DSM
           15436]
 gi|226831276|gb|EEH63659.1| ATP-dependent DNA helicase (UvrD/REP) [Actinomyces coleocanis DSM
           15436]
          Length = 686

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/615 (15%), Positives = 173/615 (28%), Gaps = 161/615 (26%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   YE  K +   +DFED+++    ++++ D+   I  +I  +  H ++DE QD S 
Sbjct: 176 ADLLKVYESVKTEAGRIDFEDVLLLMVGIMQENDL---IARQIRHQYRHFVVDEFQDVSP 232

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+E++                   +  VGD  Q+IYSF GA PK ++  +         
Sbjct: 233 LQYELLNQWLG----------GRHDICVVGDVAQTIYSFTGATPKYLVNFESD------- 275

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  +EL  ++RST  I+++ ++V  +  N    ++    +++  S R         
Sbjct: 276 -HPGARRVELNRNYRSTPQIVSLANQVLRVKNNGAVGTDLPVGSVKLVSQRDSGPAV--- 331

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                   +     +    A  +A  +  +I   T         
Sbjct: 332 ------------------------NFRSFETDEAEATEVASYVKQLISEGT--------- 358

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + +DI +L R    +         L     IS          +   I+  +   R +  
Sbjct: 359 -KPEDIAILFRTNAQSEAFENALSEL----GISYTVKGGERFFERPEIRQAVGTIRRLGE 413

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                     L   +      D+ +      +         + A       +   + +  
Sbjct: 414 ----------LSRKVLEPGSQDLIQTI----KDVVGPLGWAEEAPKAAGAVRERWESLDA 459

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           L+ +A                                                       
Sbjct: 460 LVVLAYAKQHLTIAE--------------------------------------------- 474

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                +         +     V + ++H AKGLE   V L      +             
Sbjct: 475 --FARELDERANAQLAPELASVTLSSLHAAKGLEWETVILAGISEGLVPISM-------- 524

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                          +  EE  RLLYVG+TRA  +L+I    + 
Sbjct: 525 ---------------------------AETPAEIEEEKRLLYVGVTRARTRLLITYARSR 557

Query: 671 SN---EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                +K+   R    M  +           + TN     +  A E  T   +       
Sbjct: 558 GAGRVQKRRVSRFLSQMWPELPGQQSGTAPGRRTNVAKSKKTAAAEELTELEKIIFEALR 617

Query: 728 ETIKQLMDEQKIPKK 742
           E  K   +E+ +P  
Sbjct: 618 EWRKDEAEERSVPAF 632


>gi|288560394|ref|YP_003423880.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
 gi|288543104|gb|ADC46988.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
          Length = 1546

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/670 (13%), Positives = 193/670 (28%), Gaps = 79/670 (11%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           A           Y++   ++  LDF  L +   + LK+   +         +  +IL+DE
Sbjct: 225 ALHLQVAKAYPIYKKLLDEHNYLDFNILQVKALEYLKENPET---------QYTNILVDE 275

Query: 185 VQDTSLIQWEVIRSLTEDFF------------------------VGKNTHSSPRTLFAVG 220
            QDT  +Q E+   L ++                             +      +  AVG
Sbjct: 276 FQDTDPVQIEIFEILMKNALNPIEKSKDDAEEDCPPISELELDEAEISDKKITSSFTAVG 335

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS- 279
           D  QSIY F GA                         + L +++RST +I+   ++    
Sbjct: 336 DMDQSIYGFRGALENYFEYFDNKY---------CCKKVGLNVNYRSTNEIIEFSEQYIKM 386

Query: 280 -------IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
                             +   I +    +      ++ + +  +   +           
Sbjct: 387 QRGKKSRKNLREARKESRNIYYIENEEREMEAASIAKIIKGLKDEEKIKNYNDVAVLLRS 446

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI--------QAKDILVLVRKRK 384
             +  ++         I + +  +   +          +          ++  ++     
Sbjct: 447 VLTSSKDIINVFNDENIPFQVKGLQDLENKDEIKSILTLLHFIIEDDNPQETPIITFWEA 506

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD--LMALGRFILSQEDDLSFVCMLK 442
           D   +   T        I +      IL +     +  +    + I +      F     
Sbjct: 507 DWLNLRAFTNADFKQTFIKLSSETEEILIEKQKEFEENVFNYAKLIYNDITGNRFTKRSY 566

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ------ 496
             +    ++ +  +  +  +     + ++++              ++EL           
Sbjct: 567 KGVLELEDEVLDAVFKEYPKPVLTNKTLREYGITNEDDL-EFFNQLNELKFEIFGDDKDF 625

Query: 497 --FCSPHDFFTLILGAKKG--RQQFISRFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELI 551
               +  + +  IL                 + +D +  F       E   S   ++ L 
Sbjct: 626 DERPTILNVYYRILEICGFLSEDYIFDPKNKQALDYIGLFTQIIYEYENIISNRDIRGLY 685

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             L             N N V IMT+H +KGLE PVV L       F  +      +  +
Sbjct: 686 WFLNSNIKNYSYD-IENENGVNIMTIHKSKGLEFPVVILAGLNDSSFPRE---YEDLRET 741

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +     + P+   R      L K       EE  R +YV MTRA D LI+ K+    
Sbjct: 742 KYKNGSAVFYTPRECLR---YKSLDKDDVTLHYEEEERNIYVAMTRAQDLLILSKNFKNP 798

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
            +   ++    ++            K +L   + K++     +      +   +    +K
Sbjct: 799 KKTTYSKTLEKEIKAIELKEKISSIKDELDELMKKEDVNDLSFLLKSLNDELKDIRAELK 858

Query: 732 QLMDEQKIPK 741
           +L    K  K
Sbjct: 859 ELKPLIKDHK 868



 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 34/206 (16%)

Query: 750  DINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
            + ++   L+ S+I T              +  +SD +    G I H  L+ I      ++
Sbjct: 1287 EDDKKLTLSYSSIQTYESCPFQYHLAYNYKFKISDREAITEGNINHNSLEEINKTIIERK 1346

Query: 802  KNFITSYCTK--NAKLWPAKEYKNLLLSITRLLENPM-----------MTTAMS--CDSY 846
                     +  N  L    E   ++  I   +E+P            ++       +  
Sbjct: 1347 DEKEGELVGEIDNELLISRDEIIKIVKRI--YMESPNIDRDETPIDYVLSNIFEYWDNYG 1404

Query: 847  SEVSV---SGKINCPKKDI-IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
                +     + +  ++D  ++ G ID +  +   I I +YKT        +     +  
Sbjct: 1405 RRFDIIGSEYQFDINREDYFVLIGSIDLLYKTDNGIVILDYKT---TENISKKAQEKYKK 1461

Query: 903  QLSIYEKILKD--SYPNKSLVCLLIY 926
            QL  Y   LKD   Y +  +  L IY
Sbjct: 1462 QLYTYALALKDDPMYNDAVVDKLQIY 1487


>gi|284992611|ref|YP_003411165.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
 gi|284065856|gb|ADB76794.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160]
          Length = 674

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 94/751 (12%), Positives = 189/751 (25%), Gaps = 177/751 (23%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQ--ASQTQCIEERFSLLSS--FFLTQKFTP 80
                ++   ++     G       A  ++Q      + +      L      L      
Sbjct: 77  ARAAGELRSRLAGLGVGGVQARTFHAAAMRQLRYFAPRVLGGPMPELVENKLRLVAAAAS 136

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAHYEE 139
           +  + T        DL  +++ ++       D     +               + A YE 
Sbjct: 137 RSRLSTD--RTSLRDLASEIEWAKTTLATPDDYPARAQAAGREPPFEPAAVARVYASYES 194

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           AK+++  LDFEDL++ T   L++      +  ++  +  H ++DE QD + +Q  ++ + 
Sbjct: 195 AKQRDGALDFEDLLLVTAFALEEHPD---VARQVRGQYRHFVVDEYQDVNPLQQRLLDAW 251

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                           +  VGD  Q+IYSF GA+P  +L                  +++
Sbjct: 252 LG----------GRADVCVVGDPNQTIYSFTGADPDYLLGFADRYP--------DAEVVK 293

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L   +RST  ++ + +K+       +GL       +R    R                  
Sbjct: 294 LERDYRSTPQVVALANKLIGQAPPRKGLPG-----LRLLGQRAEGPAP------------ 336

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                             +       A  +A     ++   T           A +I VL
Sbjct: 337 ---------------RFSEHPDEPTEAAAVAQACRALVDAGTP----------AAEIAVL 371

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    + +       +     +  V        +   +++ + L R             
Sbjct: 372 FRINAQSEVYENALAAV----GVPYVLRGGERFFERPEVREAVLLLRGAA---------- 417

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
                        +         +    E+          ++Q +   +   + +     
Sbjct: 418 -----AGGTEPGALVPTVRDVLASTGWVEHRPPPGGAARDRWQSLAALVDLAVDLVAEDP 472

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             D                                                +S L     
Sbjct: 473 TLDL--------------------------------------------AGFVSHLAARAD 488

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                       V + ++H AKGLE   VF+V     V                      
Sbjct: 489 AQHAPTVQG---VTLASMHAAKGLEWDAVFVVGLVDGVLPISQSLS-------------- 531

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                               +    EE  RLLYV +TRA +QL +      +   + ++ 
Sbjct: 532 --------------------RPDAVEEERRLLYVAVTRAREQLNLSWSLARNPGGRRSRP 571

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
               +       D  V     T +  +      +           ER    +        
Sbjct: 572 RSRFL-------DGLVPGSTPTAAPPQRRQKRAKVVLEGEAGELFERLRAWRSEAAASAS 624

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                      +       P+++        
Sbjct: 625 VPAYVVFTDATLQAIAETRPASLRELAALPG 655


>gi|229821378|ref|YP_002882904.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229567291|gb|ACQ81142.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 684

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 89/731 (12%), Positives = 183/731 (25%), Gaps = 169/731 (23%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A           +      ++ +           +          DL  +++ 
Sbjct: 90  ARTFHAAALRQLSYFWPDAVGGSLPRIAEYKAPLVGEASGRLGLGADRLAIRDLASEIEW 149

Query: 103 SQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           ++   +   D            A+   LT    L   YEE K +  V+DFED+++ T  +
Sbjct: 150 AKVSLVTADDYVRAASAAGRPGAAGHDLTTVARLLTMYEECKTERGVIDFEDVLLLTVGI 209

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L +RD    +   +  +  H ++DE QD S +Q  ++     +           R L  V
Sbjct: 210 LAERDD---VARAVRAQYRHFVVDEYQDVSPLQQRLLELWLGE----------RRELCVV 256

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF GA P+ +    R           +  ++ L   +RST  ++ + + V +
Sbjct: 257 GDVSQTIYSFTGASPRYLTDFPRRYP--------EADVVRLVRDYRSTPQVVRLANDVLA 308

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
               A+     S+  +   + R              +        +  +  +        
Sbjct: 309 RAGRAR-----SSAAVELVAQRPSGPAPTFDAYDDDAAEAQAIARRIAALVAG------- 356

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                                          ++  +I +L R                  
Sbjct: 357 ------------------------------GVRTSEIAILYRTNAQAEAFEQAL----AQ 382

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I  +            +++ + L R      D+     +++  L              
Sbjct: 383 AGIGYLVRGGERFFARREVREAVVLLRGAARAADERPVGEIVRDVLGGAG---------- 432

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                         A       +   + +  L+                           
Sbjct: 433 ----------WSAQAPTARGAVRERWESLDALVQ-----------------------LAD 459

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                    L                        L +        H+     V + ++H 
Sbjct: 460 DLHERRDADLPAL---------------------LAELDERAAAQHAPTVEGVTLASLHA 498

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFL      +                                     +    
Sbjct: 499 AKGLEWDAVFLAGVSDGLLP-----------------------------------ISLAE 523

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                 E  RLLYVG+TRA + L +      +   ++ ++    +      +    +  +
Sbjct: 524 GDEAIAEERRLLYVGVTRAREHLALSFGRARTPGGRATRKPSRFLDGIWPGDGTAGQGSE 583

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            +    + + +A        +    ER    +  +  +             +       P
Sbjct: 584 RSRRKARAQALAAALDDGEADPEVFERLRAWRADVARETSKPAYTILHDTTLVAIATAKP 643

Query: 760 STIDTKGKTNL 770
             +        
Sbjct: 644 RDLRQLAVLRG 654


>gi|153855426|ref|ZP_01996557.1| hypothetical protein DORLON_02571 [Dorea longicatena DSM 13814]
 gi|149752080|gb|EDM62011.1| hypothetical protein DORLON_02571 [Dorea longicatena DSM 13814]
          Length = 717

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 113/770 (14%), Positives = 222/770 (28%), Gaps = 142/770 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-LKKAQTLQQASQTQCIEERF 66
           +  E  E + K    L   QV     + S++M     T+   KA+  + A   +      
Sbjct: 66  AAGEIIERLKKKEPGLTEEQVQFFGTFHSVAMRMLKNTLLQTKAENGEIAHTVENSSMAP 125

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
              +S F       ++ +    I + S  +K    + +    +    +   K+       
Sbjct: 126 EEWTSEFEIIDPDEEQELALYLIAEYSLKVK-YKNRLKKRLEQEYPNYKAGKVTSRYKDE 184

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L     L    ++ KKK   + F DL+     LLK            +     I++DEVQ
Sbjct: 185 L---FRLYPLLKKEKKKENKMSFSDLLEEGTRLLK---------MGKNSRPEWIIVDEVQ 232

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D+   Q E + +L                +FAVGD  Q IYSF G         K   Q 
Sbjct: 233 DSDRSQLEFLEAL----------KGPETKIFAVGDPNQVIYSFRGTTQNMFFLLKNRFQ- 281

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                      + LP+++RS A IL   ++                              
Sbjct: 282 --------AKELSLPVNYRSNASILEAANRF----------------------------- 304

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                +       S    ++    +++D   +       A  +A  I  +          
Sbjct: 305 ----LQFGGKIQGSNECGEKIQIRNHYDPFQE-------AMYLADKIWTLHQEGK----- 348

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                + +DI V  R +K       +   +  +  I    + +    D   +  LM + R
Sbjct: 349 -----EYRDIAVFYRLQKQA----EILEKMFAEQNIPYEVSVKKSWKDIPVLNWLMYVLR 399

Query: 427 FILSQEDDLSFVCMLKSPLFN--FSEDDIFKICTQRHETETVYEYIQKFANCGISKF--Q 482
           F    +D  + + +L    F    ++     I       ++                  +
Sbjct: 400 FATHPDDIQAGMQVLMDKRFGDKCTKKKAEDIIKNHKTEKSDIYKNMMLFYTEKEVLSGE 459

Query: 483 HVIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +   +     +    + +      +L        +       + D + EFLN       
Sbjct: 460 DIFDSLGLKEALHPTSADYQQDAKQVLDFLNQICTYSREKKLNMSDGIREFLNGM----- 514

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                   L +                   V++MT+H +KGLE   VF++     +    
Sbjct: 515 -------ALGTIESPEDTQESAEKEEAGGRVKLMTLHASKGLEFDTVFIIGVNPGLLP-- 565

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             I+      +EE  RL +VG+TRA + 
Sbjct: 566 ----------------------------------IRCSSFDQEEEERRLFFVGITRARNH 591

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +  ++N    +     ++ + +          K+I+       +       +      
Sbjct: 592 LELSYYTNPG--EPGVLGSYSNYLKMIPEELLEWKEIRSDEEKRTNLKELTRRAKEEIRK 649

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
              ++ E +++   E +  + +             +  S  D   +    
Sbjct: 650 AEAQKAENVQEQKTESEKTENVQEQKAIHPKYGTGIVTSEDDMMVEVEFP 699


>gi|166363409|ref|YP_001655682.1| putative DNA helicase [Microcystis aeruginosa NIES-843]
 gi|166085782|dbj|BAG00490.1| putative DNA helicase [Microcystis aeruginosa NIES-843]
          Length = 766

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 91/678 (13%), Positives = 192/678 (28%), Gaps = 81/678 (11%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
            +     P     D+    S ++    P+      ++++            LL       
Sbjct: 109 LQLARRYPELSGLDLE---SSTLVIPTPSHRIIRNSVEKWL-ITDPIRYQKLLEGVEFDG 164

Query: 77  KFTPQKNIITQEINKKSPDLK-EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           + T +    +    +  P L    + + +   +  +  +            L +A  L  
Sbjct: 165 EETERLRRQSVLRTEILPSLAYTAIHELKSSGLSPQQVWELSHYTDDNYQILAIASGLYQ 224

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            YE   ++   +D++D+I+    +L++      IR +  + +  +  DE QD+S +Q ++
Sbjct: 225 QYEILMRQKNYIDYDDMILGALRVLEEE----KIRRQWQKSVFGVFEDEAQDSSPLQEKL 280

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQK 254
           I  L ++             L  VGD  Q+I S F  A+P               +   +
Sbjct: 281 ITILAKN------NDGEIPNLIRVGDPNQAINSTFTPADPVYFNWFC-------ESCQSE 327

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
            ++  +  + RS   I+   + V    +            +     R+       +    
Sbjct: 328 GNLSTMNQAGRSNTKIIEAANLVLQWVD-RDWKQGKDNHKVTEAPFRVQA-----ILPVS 381

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                     + +        + Q          I   +  ++  +   +          
Sbjct: 382 AEDPQPNPVKEGKGL-----EIYQPDDIYQTVELIEKRLVKLLQENPQHNA--------- 427

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
              +LVR+ +               Y+I +   +       +  + L  L  F+      
Sbjct: 428 --AILVRENRQGHFFAQKFAHFYKSYQIRIFEANEIDRFSQIPAEMLK-LLAFVERPHSP 484

Query: 435 LSFVCMLKS-PLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
                 L+   L    +  D+  + T   +   +Y            K     +Y   L+
Sbjct: 485 DYLKAALEVLQLRGLITAQDLNPLVTYPEQ--FLYPTPLDPELKSNEKIAR--RYCCSLL 540

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
                   +   +      +     ++             L   +  E    SSL+  I+
Sbjct: 541 KARLELPHYQLLSFFAMTLQYSGSELATLQK---------LTARIYQETAGNSSLKNTIN 591

Query: 553 ELEQYPPTIKRAHSANHNE--------VRIMTVHTAKGLESPVVFLVDTGSQVFSH---- 600
            L +   + +       N+        + I+T+H AKGL+   VF+      +       
Sbjct: 592 TLNEIIASERFEGVEEDNDDCYTRPGQLTIITMHKAKGLDWDYVFIPFLHEDIIPGKPWV 651

Query: 601 --------KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                              +          P S               +  + E  RLLY
Sbjct: 652 PNGAKFLADFTLAEVARAQIRAAVHQRYLNPDSIPIIPPPLSAWLEAGQLKKAEEYRLLY 711

Query: 653 VGMTRASDQLIICKHSNT 670
           V MTRA   L +      
Sbjct: 712 VAMTRAKRLLWMSSEKKA 729


>gi|294012022|ref|YP_003545482.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
 gi|292675352|dbj|BAI96870.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
          Length = 1134

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 119/814 (14%), Positives = 212/814 (26%), Gaps = 122/814 (14%)

Query: 8   SLNESYELI-------YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           +  E  E I          +W    F    ++      +E G P   +     +     +
Sbjct: 252 AAGEMAERIGRKHKVAAAAMWIGT-FHAFGLDIIRRFHIELGLPKDPRMMDRTEAVELLE 310

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               R  L     L        +++      K   + E        + ++ +      + 
Sbjct: 311 AEFPRLGLNHYRNLYDPTQIIADMLAAISRAKDEVVNEV------RYAELAEAMFVSAVT 364

Query: 121 K---STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                          + A YE  K++   +DF DL+     LL+       IR  +  + 
Sbjct: 365 PEDREAAERAEEVARVYAAYEGLKRQAHCVDFGDLVSMPVRLLEGN---LEIRAHLQAQY 421

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
           +H+L+DE QD +     +I +L           S  R L+ VGD KQSIY F GA    +
Sbjct: 422 DHVLVDEYQDVNRSSVRLITAL----------RSDGRNLWVVGDAKQSIYRFRGASSFNM 471

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            R         T+     +   L  ++RS  +++                          
Sbjct: 472 TRF-------GTSDFPGGARGRLKRNYRSADEVVQAFSAF-------------------- 504

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                       +  +   Q     + +     S       +S    +A  +A  I  M 
Sbjct: 505 -----------AIRMKAGDQDSGLESERGRCGASPQLRTVDQSPQQTVA--LADAIEEMR 551

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                           +D  VL    +    +      L     + V+      L +   
Sbjct: 552 QAGH----------TYRDQAVLCTGNEKLSELGQDLERL----GVPVLFLG--SLFERPE 595

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI------- 470
           IK+L++L   +  +           S  F     D+  +       +++           
Sbjct: 596 IKELLSLLTILTDRRAMGLVRAACMSE-FAMPLSDVDALFDHLRAVDSIPGAWLGELGGI 654

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF----TLILGAKKGRQQFISRFGNEVI 526
              +  G      V   +      A   +         T I     G      R     I
Sbjct: 655 TGLSETGSVALGAVAAAMRGFDQSASPWTVLATLLLDRTRITARIGGSNDIAERTRGLAI 714

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISEL----EQYPPTIKRAHSANHNEVRIMTVHTAKG 582
                FL      +      L + +  L    +        A +   + VR+MT+H AKG
Sbjct: 715 WQFMNFLRVQPGGQGLPIVRLLDRVRRLVRLGDDRDLRQLPAAAQGLDAVRLMTIHGAKG 774

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE PVV +                   P                         +   +  
Sbjct: 775 LEFPVVHVPGLNGDTIPRTPQAPPCPPPDG--------------MVEGAEGRALDVFRAG 820

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             EE   L YV ++RA D+L +   +  SN       ++ D V       +      L  
Sbjct: 821 HAEEQECLFYVALSRARDRLFLYAPTQKSNGHNRPLSSFLDRVGSGLARTKVNPAKTLPP 880

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND----INEPYILN 758
           +    +               +   E   +      + +                   + 
Sbjct: 881 APEAGDVTLVVDGALRFTGAQIALYERCPRRFFYTHVLQVGGRRTATAFMQMHEAVRTVF 940

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
            + I        E  L            H L   
Sbjct: 941 QTVIADARIIGGEGDLERQIANAF--AAHGLADH 972


>gi|291456202|ref|ZP_06595592.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM 20213]
 gi|291381479|gb|EFE88997.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM 20213]
          Length = 1311

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 100/669 (14%), Positives = 202/669 (30%), Gaps = 114/669 (17%)

Query: 14  ELIYKDLWPLPYFQVSDIN---KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
           + + +DL        S +       S  + +G     +  + ++Q         R +L +
Sbjct: 150 QALSEDLGAFTSLARSVLALSGAIGSAMIGSGCTGFDEAVERVRQWDSAFVDALRLALEN 209

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
                 + T  K    ++      D + KL          R  ++  ++ + T     + 
Sbjct: 210 EDIPDIEPTIPKIKRLKK--DSDTDWQAKLDDRAQRL-HARCAYHCAQLLEITRK-REVL 265

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y +AK++  + +F D  I    L+++      I  +     +H+L+DE QDTS 
Sbjct: 266 LQLVEAYAQAKRQKNMAEFSDFTIAAYQLIERFPS---IGERTRCRYSHVLLDEYQDTST 322

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q  ++ +L          +S    + AVGD  QSIY++ GA P      +R       +
Sbjct: 323 TQAALLAALF------HVNNSERCAVNAVGDPFQSIYAWRGASPGAFRMFQRDF-----H 371

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
              +     L ++ R++  +L   + +              T  +R R +R        L
Sbjct: 372 MPAESKPFPLSVTRRNSRIVLEAANDL--------------TLPLRSRPARPSSS----L 413

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
             +V            E                 + R     I+                
Sbjct: 414 MREVDVSSLDPMPDAPEGTLGVLGLATAGQEIDAVVRFCKAAIARYRDAGAAQE------ 467

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                + VL R +   P    +         ++        L +   I+D++AL   +  
Sbjct: 468 ---APVAVLFRSKSHMPEYQEVLE----KAGLTTFVVGYSALLERPEIRDVLALLHVVAD 520

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------ETETVYEYIQKFANCGISKFQHV 484
             D  + + +L +P F  S DD+  +               + +     A+   S++  V
Sbjct: 521 HTDTGALMRLLATPRFGLSSDDLTALACAAEAQNMEQRFRALVQAGVAPADTPRSQWGAV 580

Query: 485 IKYIHELIHIAQFCS----------------------PHDFFTLILGAKKGRQQFISRFG 522
           ++   + +  A F                               +        + I+   
Sbjct: 581 VREHRDQVANAVFLPDLLMQDNSSVRLDQLSAYGRHAVEQAVEALRQVHDMVGRSITDVI 640

Query: 523 NEVIDVL----------------------------DEFLNFTLRNEQ----NSYSSLQEL 550
              I+ L                            D  ++      Q        +L+  
Sbjct: 641 RAAIEALNLDIDTVLAGALRDPQHRVNPSLARMPMDSIVDLVDTYTQEIAVEQTPTLRGF 700

Query: 551 ISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           ++ ++              +  +V +MTVH +KGLE   V +V   +  F       + +
Sbjct: 701 MAWVDHLATVEDEAAKLPGSPVDVELMTVHQSKGLEWDAVAVVGLNAGGFPSNQGDHLKV 760

Query: 609 MPSLNDDPG 617
           +   N   G
Sbjct: 761 VLDDNHPGG 769



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 60/207 (28%), Gaps = 37/207 (17%)

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN----AKLWPAKEYKNLL 825
                   +     G   H   +      +                         +    L
Sbjct: 1098 RPIPRVSSPAAEAGTRFHDWAERFINAGKPDEAASSVDSSAAEIITTGNGVSRSDLLADL 1157

Query: 826  LSITR----------LLENPMMT---TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
             +I +          ++    +     A     ++E S++  +       I++G++D + 
Sbjct: 1158 NAIDQQSVPVCDRNLMMWQHRLASSSWAQRTPVWAERSIAVDVPEVG---IVNGKLDAVF 1214

Query: 873  ISQ-------QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCL 923
            +         +   + ++KT H   +  +      +AQL +Y  +L         S+   
Sbjct: 1215 LGGINPADTSKRYTVVDWKTGHRPTKPDD--VEHKLAQLDMYRLLLAAVEGVELDSIDAT 1272

Query: 924  LIYVSEPKVFIIPQNKLNKAFAEISTK 950
            L YVSE      P   L +  A   TK
Sbjct: 1273 LYYVSE------PDEGLRELHARAKTK 1293


>gi|318060448|ref|ZP_07979171.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
          Length = 720

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 95/649 (14%), Positives = 175/649 (26%), Gaps = 159/649 (24%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K+ +  +DFED+++ T  +L+       I  ++  +  H  +DE QD S
Sbjct: 167 TARVYAQYEALKRASGRIDFEDVLLLTIAILQD---REDIAQQVRSQYRHFTVDEYQDVS 223

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     +             +  VGD  Q+IYSF GA P+ +L           
Sbjct: 224 PLQQRLLDLWLGE----------RDDVCVVGDASQTIYSFTGATPEHLLGF--------P 265

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 +++ L   +RST  I+ + + + S           +   +   + R        
Sbjct: 266 ARHPGATVVRLVRDYRSTPQIVHLANNLLSHATG-----PAARQRLELVAQRPPGPVP-- 318

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                       + +     A  +A+ I  ++            
Sbjct: 319 -------------------------ESTEYADEVAEAEDVAHRIRALVAEG--------- 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            + A  I VL R    + L          D  +           D   I+  ++  R   
Sbjct: 345 -VPAAHIAVLFRTNGQSNLYEQAL----GDAGVPYRLRGAEAFFDRPEIRSALSAVRAAA 399

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                 +    L         D    +  Q       +         G    +   + + 
Sbjct: 400 H---SGANDTAL---------DLDAPLPAQLRRVLVSHRLWTAQPPAGSGAVRERWESLA 447

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L+ +A                                  +E             ++L +
Sbjct: 448 ALVRLA----------------------------------EELARA------RPGAALTD 467

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L +EL          H+   + V + ++H AKGLE   VFLV     +            
Sbjct: 468 LAAEL---ADRQANQHAPTVDGVTLASLHAAKGLEWDAVFLVGLAEGMLP---------- 514

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                    +     +   EE  RL YVG+TRA  +L +     
Sbjct: 515 -------------------------ITYAQTEEQVEEERRLFYVGITRARSRLHLSWSL- 548

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
            S               D+       +       +      A     H P+    ER   
Sbjct: 549 -SRTPGGWGGRKPSRFLDALRTPGSARPASDAPRLRTGRAPATNGERHTPDRGAGERPVP 607

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            ++     ++  +  +             PS +D      L     +  
Sbjct: 608 RRRAPARCRVCGRTLTEAGEMKLMRCETCPSDMDEGVYQRLRDWRGERA 656


>gi|152990757|ref|YP_001356479.1| ATP-dependent DNA helicase UvrD [Nitratiruptor sp. SB155-2]
 gi|151422618|dbj|BAF70122.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp.
           SB155-2]
          Length = 671

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 217/701 (30%), Gaps = 114/701 (16%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS-SFFL 74
           + + + P     ++  NK  +  +        KKA+ ++  +           L+    L
Sbjct: 43  LQQGIEPKKILLLTFTNKAAAEMIARVERVFGKKAKEIEAGTFHAVSYRWLKSLNPKVVL 102

Query: 75  TQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN--------TYKMFKST 123
            Q    +   K+I  +       D K     +  +   +               K     
Sbjct: 103 KQPKELKMLFKSIYEKRDFSLVSDTKPYAASTLFDLYSLYQNSEFEISFGKWIGKRSDEQ 162

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +   +   YEE K +   L F DL++        +D               +L+D
Sbjct: 163 SVFGAVYDDIVQEYEEMKDEYGFLSFNDLLLQAIR---NKDALQT--------FYEVLVD 211

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ +Q   + SL  +            +LF VGD  QSIY+F+GA  + +   K+ 
Sbjct: 212 EYQDTNNLQARFLESLRFE------------SLFCVGDYDQSIYAFNGANIQIIAGFKQR 259

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST-TTIRHRSSRI 302
                       +I  L  ++RST  IL + ++V S  E       +        +   +
Sbjct: 260 YPN--------ANIFNLSKNYRSTYYILDLANRVISNNERIFPKKLEVVNQKSPKKPKLL 311

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 + +E +  +      P++E    + ++   +    I A      I         
Sbjct: 312 AFSDLYEQYENIALRIKRSLTPKEEIAVIFRNNASADG---IEAALREQGIGCKRKGSQS 368

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
           F   K+       + +L+  +     I              V  +    + + L      
Sbjct: 369 FFEMKEIKALFDLVSILINPKDLLAFIHIFEYAKG------VGASSAKEIFEALQRCGDG 422

Query: 423 ALGRFILSQEDDLSFVC-MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            L + +    D  +     +++      +D +      R  +  V E I+        + 
Sbjct: 423 DLVKGLKEPIDIYNPFEKKVRNQQLGLFDDCVQIGSKSRFVSLDVSEAIKAHPVLTYPRM 482

Query: 482 -QHVIKYIHELIHIAQFC----SPHDFFTLILGAK----------KGRQQFIS-----RF 521
            +  + Y+  L+ + +       P  F  LI  +           + R +        + 
Sbjct: 483 SEEAVLYLDTLLGLYKEMKRIKRPTTFIQLIKDSFIFDNIIKKIAQNRAKLKDGTIDQKL 542

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            +E  + +   +     +    Y  +    + +      +     A    V+++TVH +K
Sbjct: 543 KDEAFERIQRRIALVH-HLSQMYEDIYRFYNAMVLGGNEM-----AQGEGVQLLTVHASK 596

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   V++VD     F +                                  L    K 
Sbjct: 597 GLEFKEVYIVDLMEGRFPN----------------------------------LKLISKG 622

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
            + EE  RL YV +TRA + L +        +K+    + +
Sbjct: 623 GSIEEERRLFYVAVTRAKEILYLSFAKYDRLKKQEFLPSRF 663


>gi|78213176|ref|YP_381955.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp.
            CC9605]
 gi|78197635|gb|ABB35400.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp.
            CC9605]
          Length = 1226

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 105/900 (11%), Positives = 234/900 (26%), Gaps = 174/900 (19%)

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               ++                 L +      +  +++  V+ F  L+      +   D +
Sbjct: 344  MPALQAAVAALWDAPIERTWQYLLERCLQELDRRRRRRGVITFGGLL----AAMDPGDGA 399

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                  + Q    +++DE QDT  +QW +++                  L  VGD KQ+I
Sbjct: 400  VAWLAPLQQRYRAVMVDEFQDTDPVQWRLLQRAFG--------AGERHLLLMVGDPKQAI 451

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            Y F G +    +  +   +           I  L  +FR+TA ++  ++++ +       
Sbjct: 452  YRFRGGDLATYMAARDQVE----------RIDHLLDNFRTTAPLMEGLNRLMAPGLPRSE 501

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            L   +       +          L     +                     +      LA
Sbjct: 502  LLVPAVQPRSSATPPQDAPALQLLLLSTEAPSSRSA--------------LEADLPRRLA 547

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +   +              +  +   D+ VLV + +         R       +    
Sbjct: 548  AMVLQQLQQ------------RDDLTPADLCVLVSRHQQA----EDLRRALGACGLPTRL 591

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF--KICTQRHETE 464
              +  + D  A   L      ++   DD     +  S L N + D +   ++     +  
Sbjct: 592  VTQGDVLDSEAALLLQWFLDALVEPGDDARLRLLACSGLMNIAPDALEPGRLDQLAVQLR 651

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
               E + +    G        + +  L    +          ++     RQ         
Sbjct: 652  GWAELMPRLGLLGALADLLSGEQMAGLSERGRMLGDLQQAARLVQEAMHRQG-------- 703

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                    L+     +      L       +  P   +       + + ++TVH +KGLE
Sbjct: 704  --------LDVATAADWLRRERLHPS----QPVPEARQPHSDQADSAIAVVTVHRSKGLE 751

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             PVV                   +   L  DP     + +            +  ++   
Sbjct: 752  YPVVICPYLWQSP--------PAVSGPLWRDPRSGECLARVDVHWGEGWQAAQQAQQDAA 803

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             E  RL YV +TRA  QLI+      + ++ S    W      +    + +   +L  ++
Sbjct: 804  AEAERLAYVAVTRAQTQLILIWAR-ANGQEDSPLPAWLFGAEAAGDAIDSLTDERLRQAL 862

Query: 705  NKDEWIA------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
             + +             +      PL+ E      + ++       +     I     + 
Sbjct: 863  AERQVPISIDGLVESLPSGKRWRPPLQAEPLALGSIPKRIDRSWGRASYSAWIASSDDVQ 922

Query: 759  PSTIDTKGKTNLES-----------------------LLSDNQTFNRGLIIHKLLQVIFT 795
                        E                        L +  +    G  +H++L+    
Sbjct: 923  LHEQGRDRDPGAEESTSESTLELMAARAEQAWSKTGPLAAFPRGAGAGDCLHRILEQFPF 982

Query: 796  LPEHKRKNFITSYC---TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--------CD 844
                  +                       ++L  + ++L+ P+     +          
Sbjct: 983  SAAEATEPRQRHELIVAELRLAGLDPDLQNDVLTGLEQVLQTPLGGPLGALSLDRLGPHQ 1042

Query: 845  SYSEVSVSGKINCP------------------------------KKDIIISGRIDQISIS 874
               E+S    +                                      ++G ID +   
Sbjct: 1043 RLPELSFDLPVQHVRTADLVAAFGCDAEARFGRSYSPALASLSINSRGFLTGSIDLVFQD 1102

Query: 875  Q--QNIFIFEYKTHHHVPQ-------------------EIEHIPYTHIAQLSIYEKILKD 913
               Q  ++ ++K++    +                   E + + + +  Q  +Y   L  
Sbjct: 1103 PQHQRWWVLDWKSNWIGERRTSAEPGLCGPHHYSQAAMEEQMLHHHYPLQAHLYLVALHR 1162


>gi|313681842|ref|YP_004059580.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994]
 gi|313154702|gb|ADR33380.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994]
          Length = 692

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 97/603 (16%), Positives = 184/603 (30%), Gaps = 102/603 (16%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +   +E  KK+   ++F DL+++  DL K+ D+              +LIDE QD
Sbjct: 169 AIYADIIDEFEALKKEYGFVNFNDLLLHMRDLAKQSDL----------GYKEVLIDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I ++             P +LF VGD  QSIY+F+GA+   +          
Sbjct: 219 TNALQGTLINAM------------RPPSLFCVGDYDQSIYAFNGADISIIGSFTTNFP-- 264

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +  L  ++RST  IL++ + V +  E     + + T T   +S        
Sbjct: 265 ------DAKVYTLNKNYRSTVPILSLANTVIAYNERIYPKALEVTRTQEAQS-------P 311

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM----IGTDTIF 363
             L    +         +    ++  + +      +  A  I  T+  M           
Sbjct: 312 SLLIYDELFDQYHGIAQKIGDSSTPREEIAVIFRNNASADGIEATLREMGIPCRRRGGTS 371

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
               K +    D+  L+    D      L  + K      V       L   L      +
Sbjct: 372 FFDSKEIKALLDMYTLLVNESDMMAFIHLFDYAKG-----VGSAIAKELFVALQKLGKGS 426

Query: 424 LGRFILSQEDDLSFV---CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
             R + S + +++       L   L  F +        +  +      ++          
Sbjct: 427 FLRGLYSPDSEITNPFEKRRLNHQLGLFDDYAELGSAGRFAKLGLDPNFMGNPILKHAKL 486

Query: 481 FQHVIKYIHEL----IHIAQFCSPHDFFTLILGAKKG---RQQFISRFGNEVIDVLDEFL 533
            +    ++H+L      +     P      I  +       +   +R        +DE  
Sbjct: 487 SKDSATFLHDLFILFRQLRDIKEPKAAVQKIALSSLYGHVIEMLSTRRATTENGSIDE-- 544

Query: 534 NFTLRNEQNSYSSLQELISELE---------QYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                  Q        L+ EL               +          V ++++H +KGLE
Sbjct: 545 -RAKSESQERIRRKCTLLFELSRPYKDHERFLNAMVLGSQDLTQGEGVHLLSIHASKGLE 603

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V+++D     F ++                                      +  + 
Sbjct: 604 YKEVYVIDLMDGRFPNR----------------------------------KLMSRSGSI 629

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           EE  RL YV +TRA D+L +        +K +   + +         DE    +    S 
Sbjct: 630 EEERRLFYVSVTRAKDRLFLSYAKYDKIKKTNFVPSQFLFEAGLIPKDEMYAALVAKGSN 689

Query: 705 NKD 707
            + 
Sbjct: 690 EEA 692


>gi|119491302|ref|ZP_01623356.1| hypothetical protein L8106_21934 [Lyngbya sp. PCC 8106]
 gi|119453466|gb|EAW34628.1| hypothetical protein L8106_21934 [Lyngbya sp. PCC 8106]
          Length = 795

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 95/635 (14%), Positives = 195/635 (30%), Gaps = 82/635 (12%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK-EKLKKSQDEFIKIRDRFNTYKMF 120
                 L+       + T +    +    +  PDL  + +++++   +K  D  +   + 
Sbjct: 181 PRHYQRLIEGMQFDGEETERLRRQSVLRTEVLPDLSWKVIQEAKSSGLKPSDLRDLATII 240

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                 L +A  L  +YE+  K+   +D++++I+    +LK       +  +  + +  +
Sbjct: 241 PDEYEILAIAAGLYENYEKLLKQRQFIDYDEMILAALRVLKND----RVCQQWQERVFAV 296

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLR 239
             DE QD++ +Q E+++ L  D         +   L  VGD  Q+I S F  A+P     
Sbjct: 297 FEDEAQDSTPLQTELLKILATDSTS-----DNILNLVRVGDPNQAINSTFTPADPIYFRN 351

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI-PENAQGLSEDSTTTIRHR 298
             +          Q   +  +  + RS+  I+   + V      +    +E        R
Sbjct: 352 FCQD-------CQQIDRLATMDQAGRSSQIIIDAANFVLKWVNNSQLAGTEKPFQAQEIR 404

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
               G            S  +              D              IA  +  +I 
Sbjct: 405 PVTEGDP---------QSNPNPSPVGLGLELYRPVDV-------YQTVELIAERVIQLIQ 448

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT--------RFLKNDYKISVVGNDRF 410
            +                 +LVR+ K    I+ L         +    ++ I +      
Sbjct: 449 DNPD-----------GKFAILVRENKQGEFISNLLTRPDEFNFKVDLREHPIKIYDA-SL 496

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYE 468
              +     ++++L +FI            LK  S        D   +  Q  E    + 
Sbjct: 497 AARNSRIPAEILSLLQFIDRPHSPDYLKAALKVFSDRQLIPNQDFNALVIQPEE----FL 552

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
           Y          + +    +   L+      +P    + +    +  +  ++        +
Sbjct: 553 YPGPLETSPSDQVRKCRLFCRGLLQARLELAPFQLISFLALTLQYERSELATADKLAERI 612

Query: 529 LDEFLNFTLRNEQNSYSSLQELISEL---EQYPPTIKRAHSANHNEV-------RIMTVH 578
           + + L        NS  ++  +++E+   E++          ++  +        I+T+H
Sbjct: 613 VKQTLG------NNSIPAIVNVLNEIVSSERFETVDIVDQDESNESIFTRKGQLTIITMH 666

Query: 579 TAKGLESPVVFLVDTGSQVFSHK-----HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            AKGL+   VFL     Q            + +                   +     V 
Sbjct: 667 KAKGLDWDYVFLPFLHEQTIPGSLRVLPQSRFLGEFTLSEVARAQIRANLHQQHPLPNVM 726

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
              +        E  RLLYV MTRA   L +    
Sbjct: 727 QAWEQAGYLKTAEEYRLLYVAMTRAKQLLWMSAAR 761


>gi|29829614|ref|NP_824248.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
 gi|29606722|dbj|BAC70783.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
           MA-4680]
          Length = 770

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/548 (15%), Positives = 158/548 (28%), Gaps = 160/548 (29%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + A YE+ K+   V+DFED+++ T  +L+       I   +  +  H ++DE QD S 
Sbjct: 224 AQIYATYEDLKRDRAVIDFEDVLLLTVGILQD---RQDIAEAVRAQYQHFVVDEYQDVSP 280

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++     +             L  VGD  Q+IYSF GA P  +L  +         
Sbjct: 281 LQQRLLDLWLGERDS----------LCVVGDASQTIYSFTGATPDHLLDFRTR------- 323

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++++L   +RS+  ++ + + + +           +   +   S R      V  
Sbjct: 324 -HPGATVVKLVRDYRSSPQVVHLANGLLAQARGR-----AAEHRLELISQREPGPEPV-- 375

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                             +T Y D   +       A   A  I +++ +           
Sbjct: 376 ------------------YTEYTDEPAE-------AEGAARRIRDLLASG---------- 400

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           + A +I +L R    + +          D  +           D   ++      R    
Sbjct: 401 VPAAEIAILFRTNSQSEIYEQAL----ADAGVPYQLRGAERFFDRPEVRKAGVALRGAA- 455

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                          F    D +                 + + +   +    V +    
Sbjct: 456 --------------RFG-GNDTLLDDVVDLPSQVRAVLSGEGWTSRPPAGSGAVRERWES 500

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQE 549
           L  +A                                      N            +L +
Sbjct: 501 LAALA--------------------------------------NLAQDFAAAKPDATLGD 522

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L++EL++               V + ++H++KGLE  VVFLV     +            
Sbjct: 523 LVAELDERASAQHAPTVQG---VTLASLHSSKGLEWDVVFLVGVAEGMMP---------- 569

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                    +         EE  RLLYVG+TRA   L +    +
Sbjct: 570 -------------------------ITYAKTDEQIEEERRLLYVGVTRARQHLSVSWALS 604

Query: 670 TSNEKKSN 677
            S   + N
Sbjct: 605 RSPGGRPN 612


>gi|83815427|ref|YP_444856.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
 gi|83756821|gb|ABC44934.1| probable ATP-dependent DNA helicase [Salinibacter ruber DSM 13855]
          Length = 855

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 110/816 (13%), Positives = 249/816 (30%), Gaps = 124/816 (15%)

Query: 6   GLSLNESYELIYKDLWP---LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
           G++        +                +      ++ +     LK A+     S+    
Sbjct: 48  GVAPGNILASSFSRATAQDLEAGLTELGLPDVNCRTLHSLGRQFLKWAEAEHHWSRRLGD 107

Query: 63  EE----RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI--KIRDRFNT 116
           E+    R   + +     +   ++++   E++    +L++++   + +     + +    
Sbjct: 108 EDLNPSRLGPVLAGRALTRLARERDVDDHELDIDRGELEDQVSAWKAQLCYPDLDEAALP 167

Query: 117 YKMFKSTLASLTLAKYL---NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
               +    +    +       +YEE +++   + F+D+++   + L + D    +R + 
Sbjct: 168 PAAREEARQAEHDNEDFVTLYQYYEEERRREGWVTFDDMLLEGWEALLRFDD---LRARA 224

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            Q   H+LIDE QD S +Q++++  LTE            R   AVGD+ Q IY + GA 
Sbjct: 225 QQAYEHVLIDEFQDISRVQYQMLDVLTE----------PHRNYMAVGDDDQCIYEWRGAN 274

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
           P  +L  +   +              +  +FRS A    + + V +  ++ +        
Sbjct: 275 PSFILDFREEYEAD---------EYLIRDTFRSQAPHTVLANAVIAHNDHRREK------ 319

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
              H +   G  G+ Q+                               A   A  +A  I
Sbjct: 320 ---HLNLTRGFGGSTQVH--------------------------AADGADAEATHVAGAI 350

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            + + T               +++VLVR+   TP +  +      D  +           
Sbjct: 351 ESQLDTGRTLP----------EMVVLVRQYAQTPSLEQVF----IDRDLPYRIVGNVPFY 396

Query: 414 DHLAIKDLMALG---------RFILSQEDDLSFVC-------MLKSPLFNFSEDDIFKIC 457
               ++ L+            R     +   +          +++ P    S D I ++C
Sbjct: 397 RRRPVQVLLRHLFWGTLEATVRTAGWFDHRRNAQRYVDRFQKLMREPNRYVSTDLITRLC 456

Query: 458 TQRHETET-----VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI--LGA 510
            +    ET     +   +    +    + +  +    +L+      +      LI  L  
Sbjct: 457 REAVGDETSITDLLAASMGAMHDRTAERVERFLDTADQLVDRLDEPAHRTVDWLIKALDY 516

Query: 511 KKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
           +   +++ +     +  I      ++F        +  +  ++  +++     +    A 
Sbjct: 517 EDYLRRYSAFEELADRRIRTARSLIDFAR-----GHPDVASVLRRIKEISVD-RPDRGAQ 570

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + + I ++H AKG E PVVF+                   P  +D  G         S 
Sbjct: 571 ADVLEIRSIHRAKGREWPVVFVPGCNDGTIPTSRDDSTMPPPDEDDSAGASDDSGSEDSD 630

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK---KSNQRTWYDMV 685
            +      +       EE  RL YV +TRA +QL +             +++      + 
Sbjct: 631 TDDAPAARR-------EEERRLFYVALTRAQEQLHLSYDRTEPPSPFLAEADAEHRLALC 683

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                   R         +      A          T  +  E  ++ +      ++   
Sbjct: 684 DRVRPVFHRPADDWAAADVAWLCIGAGALRLRRYLTTWWDPTEAQRRALAAHLGREEALR 743

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
              +     Y  +P   +         +   +    
Sbjct: 744 EAADAEIAAYARDPGAEEKGAHDASSPMEEGSDASE 779


>gi|298245873|ref|ZP_06969679.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297553354|gb|EFH87219.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 1233

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 119/898 (13%), Positives = 279/898 (31%), Gaps = 156/898 (17%)

Query: 87   QEINKKSPDLK--EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            + I++   +L   E+  +      ++    +  ++ +    +L +A+ +   YE+A  + 
Sbjct: 396  KAISRAKDELITPEEYTRLAQAMFELAQGQDDTEVLERAEKALEIAQ-VYTLYEQALGRR 454

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
               DF  L++ T  LL++      +  +  Q    +L+DE QD +     ++R L  +  
Sbjct: 455  GDCDFGGLLLLTVRLLREHPE---VLAEQQQVYQFVLVDEFQDMNRASGVLLRVLAGE-- 509

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                       ++ VGD  Q+IY F GA P  + +  +              I+ L  ++
Sbjct: 510  --------AGRVWVVGDANQAIYGFRGASPANISQFAQDFP--------GAVILPLSRNY 553

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS  D++++ +             +      +++  R+ + G                  
Sbjct: 554  RSRPDLVSLAEAF------RCTYLDKGQEPGKNQPVRVAETGPYVTL------------- 594

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                           + AS  A  +A  I+++        + +++    KD++VL R R 
Sbjct: 595  ---------------AQASNEASEVAGIIADI-------QHKRRQGYNYKDMMVLCRTRS 632

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                IT                ++R    +   +KD++ +   + + E  +  + + + P
Sbjct: 633  QAQKITRALLEADLP------THERAGTLEQEHVKDVLGMLLLLSN-ESGMGLLRVARLP 685

Query: 445  LFNFSEDDIFKICTQRHET-------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
             +  S++DI  +    HE            E+    ++ G +  Q ++  +  L      
Sbjct: 686  DYRLSQEDIEALLLSAHERRVSPRGLLLTEEFPLDISSEGRNTLQRLVSSMRALQQ--CN 743

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVL----DEFLNFTLRNEQ------------ 541
             +       +L      +  +    +EV   L    D  L      +Q            
Sbjct: 744  DTWTCMSQYLLQETSLVRDLLRHPEDEVAKGLLLDYDRLLQLARHYDQQLEARRRVLAQE 803

Query: 542  -------NSYSSLQELISELE---------QYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
                   +  + L+  +  L              + +       N +++MTVH +KGLE 
Sbjct: 804  AVSLEELSMEARLKGFLEYLSMLVVLRQDGATRESGEGEDEEEANIIQVMTVHASKGLEF 863

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            PVV++       F                      +   + +  + +       + +   
Sbjct: 864  PVVYMPGLVQNRFP-------------------LTYRSSAVNAPDGMLLAKNTGRAAHDG 904

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
                L YVG TRA D L++        +          +       +  + + +L     
Sbjct: 905  GEACLFYVGATRARDHLVLSYSERYGKKSYKRSLFLDPL-------EAAMPQERLAQLAW 957

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
            +      E      +   ++  E     M    +   L    +    +         D  
Sbjct: 958  EAHGEIEERVEESLKPISIQPGERFLDRMRPTDLSSSLVEVYRRCPRQYAYSTIYHFDGD 1017

Query: 766  GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK--NFITSYCTKNAKLWPAKEYK- 822
                     +  QT     ++HK L  +    +        + +   ++ +    ++   
Sbjct: 1018 ADAYRLFRQATQQTVE---VLHKQLASMADSSQGTLPTFEELEALYKRHWRELGGEDMPF 1074

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-----ISQQN 877
              +     +     M   +   S ++ S+   ++       +   +D+I        +  
Sbjct: 1075 APMYEAHGIEVVEGMRQKLVTQSETQWSMRESLHVDLAGRSVRVTVDRIESSSQPQEEGP 1134

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            +             + +  P     +L  Y    +  +P +S+      +S  +   +
Sbjct: 1135 LRFV-----RTRYGKSKEKPKADTREL-FYTLASRQHHPGRSVELHSHNMSTGETIPM 1186


>gi|257372988|ref|YP_003175762.1| exonuclease V subunit beta [Halomicrobium mukohataei DSM 12286]
 gi|257167712|gb|ACV49404.1| ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein
            (contains helicase and exonuclease domains)
            [Halomicrobium mukohataei DSM 12286]
          Length = 1142

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 117/1002 (11%), Positives = 271/1002 (27%), Gaps = 118/1002 (11%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC- 61
                L      E +      L      +       +      T+L+ A++ ++A +    
Sbjct: 152  REAALDALRGRESLTARFDRLDEAYGDETASDGRGADGRTLDTLLETARSAKRARRLSDE 211

Query: 62   --IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-- 117
               +     +   F   +      ++         +     ++  D+   +  +      
Sbjct: 212  QFRDRLLGAIDEAFPDGRPATFDAVVRDVARFFDEETAAAFRRRHDDEAAVTAQSRACFD 271

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW-IRYKIDQE 176
            +         +L       Y+   ++  VL  +D+     D   +   +    R ++ Q 
Sbjct: 272  RWRARVEEFCSLVVAYETEYDRRCRERGVLAHQDVAYWVADFFDESGDADDSFRERVRQR 331

Query: 177  INHIL----IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
              H L    IDE QD S+ Q + +  L  D             +   GD  Q IY++  A
Sbjct: 332  HAHALQTLVIDEAQDVSVAQHDALAPLVPDDA----------RVLLAGDTDQCIYAWRDA 381

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             P    R           +       +   ++R   D+   VD VF           D  
Sbjct: 382  RPALFTRAFDE-GTYFGRSWTPHERADAARTYRMRPDVSAAVDAVFETVFT------DPA 434

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                HR+                 +  S+      S+ +              A  ++  
Sbjct: 435  RGAVHRTGDGYAPVETDR------EATSEPAVHVASYRARGSPGTTTWFEESEAAPLSNY 488

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +        +  +G         + VL   R +   +            +SV       L
Sbjct: 489  L-----HGALADDGFAGRDADGPVEVLFPTRTNMRSLAARLEA----KGLSVADASEL-L 538

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCM------LKSPLFNFSEDDIFKICTQRHETETV 466
             +   ++ ++ +  +++   D      +        +     +  +I      R +    
Sbjct: 539  FETPLVELVVGVVEWLVDPFDPERTRALFDGAVPAVTCDDGSTVREIAAAADYRLDEIGA 598

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
             + +       +     +   +                  +        Q         +
Sbjct: 599  DDRLPARVETFLDDLAELRGRLARRTADPGALVVATVVETLALGTDPFDQV--DDPRRCL 656

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-----SANHNEVRIMTVHTAK 581
             VLD  +      E     SL EL   L++Y  +            +  +V   T+H AK
Sbjct: 657  AVLDTLVETVESWEGTDRYSLSELAGVLQRYRASPSHGPLVPVPDDSDYDVVFRTIHNAK 716

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV--------- 632
            G E+ +V L D    +  H   +   +          P   P                  
Sbjct: 717  GDEADIVCLADLSRPLGVHGPHRDSFVARGETLALAPPATAPSVPVDEPSAHGVESVPRL 776

Query: 633  -----------------SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                               +   L  + + +  R LYV MTRA D L++    + ++   
Sbjct: 777  RWATNRWVGDEQPRLGGPPVFSELAAAHRADRWRTLYVAMTRARDHLVLSVPRDATSHGT 836

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINK---DEWIAYEWSTHHPENTPLEREETIKQ 732
              Q +W   +  +    + +++ ++  ++ +   +  +A        + +  +      +
Sbjct: 837  PPQDSWVTTIRRALALPDSLERGRIDTALQRPTGEYPLAIGCLDVAYDASVSQSSRPTPR 896

Query: 733  LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF------------ 780
                    +   +P   + +  Y L     +        + L  ++              
Sbjct: 897  TALAPSPTRTGRTPRFVNGSTLYPLATGLDEHWLAHLKGAPLHSDRPAPDDGLPLAFDAV 956

Query: 781  ---NRGLIIHKLL----------QVIFTLPE--HKRKNFITSYCTKNAKLWPAKEYKNLL 825
               + G I H +L            +    E    R +       ++      ++  + +
Sbjct: 957  GPDDLGTIAHDVLTTAVDRGVSTATLEDCAEPLAGRLDAAIDEQCRDVGGRERQQVASYV 1016

Query: 826  LSIT--RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFE 882
                  +     +     S   Y E  +   +      I      D +S +     ++ +
Sbjct: 1017 RETVCPQFASTGVWERLQSSAVYVEEPLDAVLPVADHTIETRNHADIVSRAPDGTWYVDD 1076

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
             K    V  + +     +  Q + Y  +L+    + ++   +
Sbjct: 1077 IK---LVLADTDATRDRYALQTAFYAWLLERQLDDATVRGRI 1115


>gi|256785335|ref|ZP_05523766.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 716

 Score =  162 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 87/548 (15%), Positives = 153/548 (27%), Gaps = 160/548 (29%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L A YE+ K+   V+DFED+++ T  +L+       +  ++  +  H ++DE QD S 
Sbjct: 168 AQLYAAYEDLKRARSVIDFEDVLLLTVAVLQD---RHDVAEQVRAQYQHFVVDEYQDVSP 224

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++     D             L  VGD  Q+IYSF GA P  +L  +         
Sbjct: 225 LQQRLLELWLGD----------RDDLCVVGDASQTIYSFTGATPDHLLDFR--------G 266

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++++L   +RST  ++ + + + +           +   +   S R         
Sbjct: 267 RHPGATVVKLVRDYRSTPQVVHLANGLLAQARGR-----AADHRLELVSQRPAGPEP--- 318

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                      + S     A   A  I  +I +           
Sbjct: 319 ------------------------GYAEYSDEPAEAEGAARRIRELIDSG---------- 344

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           + A +I VL R    +            D  +           D   ++   +  R    
Sbjct: 345 VPAAEIAVLFRTNSQSETYEQAL----ADAGVPYQLRGAERFFDRPEVRKAGSALRAAAR 400

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              +              S  D       +       E        G    +   + +  
Sbjct: 401 FGGND-------------SLLDDAVDLPSQVRAVLSGEGWTTQPPAGSGAVRERWESLAA 447

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSLQE 549
           L                                         +            ++L +
Sbjct: 448 L-----------------------------------------VGLAQDFAAARAGATLSD 466

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L+ EL++               V + ++H+AKGLE  VVFLV     +            
Sbjct: 467 LVVELDERAGAQHAPTVQG---VTLASLHSAKGLEWDVVFLVGVAEGMMP---------- 513

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                    +         EE  RLLYVG+TRA ++L +     
Sbjct: 514 -------------------------ITYAKTDEQIEEERRLLYVGVTRARERLHLSWALA 548

Query: 670 TSNEKKSN 677
            S   + N
Sbjct: 549 RSPGGRPN 556


>gi|220909475|ref|YP_002484786.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219866086|gb|ACL46425.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 827

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/694 (11%), Positives = 179/694 (25%), Gaps = 143/694 (20%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   +   A L         YE+ + +  +L F+D++++  +LL +         +
Sbjct: 171 ALRVASQAQPPEAPLEWYLDFYQLYEQERIEQQLLTFDDMLLSAWELLHRHPQLLTQVQQ 230

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
               +     DE QD +L+Q +++  +T           S R    VGD+ Q+IYS+ G+
Sbjct: 231 QQDTVL---CDEYQDVNLVQADLLDLITA----------SHRNYMVVGDDDQTIYSWRGS 277

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + +L                  +  +  +FR  A  + + ++V               
Sbjct: 278 DCRFILDFADRYG---------AKVFTITDNFRCGASHIALANRVIEHNRTRYRKRL--- 325

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                 S   G  G   L      +                           LA  +   
Sbjct: 326 ------SLTRGLRGHTHLHPARHPRE--------------------------LAETVVKE 353

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +             ++R     ++++LVR    TP +         + +I          
Sbjct: 354 VLQ----------SQERGTSLAEMVILVRTYGQTPPLEQAF----LNAQIPYRVVGNLPF 399

Query: 413 TDHLAIKDLMALGRF--------------ILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
                I  L+                   +   +    ++ +  +PL         +I  
Sbjct: 400 YRRPEILGLLKYLELAQLEQRRLSEGLTPVEQGQWGACWLQIYNTPLRYIPRAVAEEIRE 459

Query: 459 QRHETE-----TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
                       + +           + + + + +  ++   +          +      
Sbjct: 460 GAVLAGECLVYQLRKTTADQPEWLQRRLRELAQVLEWVLSQTETTPAASVLAELESRLGY 519

Query: 514 RQQFISRFGNE-----VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
            +   SR   E       + +   + ++         S+ E ++ L++      +     
Sbjct: 520 CRYLTSRSQAEETGQSRAENVRAAIQWSQGF-----GSVGEFLAHLQKLE----QPDRDQ 570

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + + +M++H AKGLE   VFL     +V                               
Sbjct: 571 PHCLTLMSIHRAKGLEWETVFLPFCNDKVIPQAR-------------------------- 604

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                        + +EE  RLLYV +TR+   L +    +        +     ++   
Sbjct: 605 -------------ADREEERRLLYVALTRSRRDLHLLWLKDEPISPFLQESQCQRVLEQC 651

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                  +      S +    +                 E             +    I 
Sbjct: 652 QTLTRIYEHSPREWSAHDLVTLVRLSPWLGLPRYLSHYGEQPPTWTAIAAERLQQVLRII 711

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
                   L       +      +L         
Sbjct: 712 QTQGWETKLGVDLEQLEAWEKFGALEEFPGAALI 745


>gi|307152601|ref|YP_003887985.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
 gi|306982829|gb|ADN14710.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
          Length = 784

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 91/630 (14%), Positives = 183/630 (29%), Gaps = 57/630 (9%)

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTY 117
                    LL       + T +    +    +  P L    +++++      +D +   
Sbjct: 149 ASTPGRYQVLLEGLQFDGEETERLRRQSVLRTEVLPSLTYTVVREAKSSARSPQDVWELS 208

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              +    +L +A  L   YE   +    +D++D+I+    +L+       IR      +
Sbjct: 209 SYTQDPYQTLAVAAGLYEQYERLMRSRDYIDYDDMILAALRVLEDPG----IRQHWQNLV 264

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKR 236
             +  DE QD+S +Q ++I  L  D          P  L  VGD  Q+I S F  A+P  
Sbjct: 265 FGVFEDEAQDSSPLQEKLITLLATDPKNPHA----PPNLIRVGDPNQAINSTFTPADPVY 320

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                       +    +  +  +  + RS+  I+   + V             +     
Sbjct: 321 FNWFC-------STCHTEGKLATMDQAGRSSEIIIKAANFVLHWICQTWQKGAKTRGNTP 373

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             S    Q+        +V+  D Q +   +      +    +     + + I   +  +
Sbjct: 374 QVSMNNSQLPFRLQDINLVTADDPQPDANPQPVGQGLEIYTPKDIFETV-KLIEQRVVEL 432

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +  +   +             +LVR+ +    +      L   ++I V        +  +
Sbjct: 433 LEANPKHNA-----------AILVRENRQGRFLAEQLAHLPKQHQIRVYEVSEVDRSSQI 481

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEYIQKFAN 475
            ++ L  L         D     +            D+  + T   +    + Y      
Sbjct: 482 PLEMLKLLLFLDRPHSPDNLKAALEILEQRGLIPAQDLNALVTYPEQ----FLYPSPLEP 537

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                 +   +Y   L+        +   T +    K     ++        +  E +  
Sbjct: 538 PQKPPVEQARRYCCNLLRSKIELPHYYLITFLGMTLKYSGSELATVQKLADRINQEIVG- 596

Query: 536 TLRNEQNSYSSLQELISELEQYP-----PTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                 +S  ++   +SE+                     ++ I+T+H AKGL+   VF+
Sbjct: 597 -----NSSLKTILAALSEIVNSERFEAIEEDNDDQYTRAKQLTIITMHKAKGLDWDYVFI 651

Query: 591 VDTGSQVFS------------HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
                 V                          +          P    R        + 
Sbjct: 652 PFLHDDVLPGKPWVPTAAKFLGDFTLAEVARAQIRAAVHSQYQNPDILPRIPDPLKAWEE 711

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             K  + E  RLLYV MTRA   L +    
Sbjct: 712 ANKLKEAEEFRLLYVAMTRAKRLLWMSAAK 741


>gi|67624459|ref|XP_668512.1| helicase  [Cryptosporidium hominis TU502]
 gi|54659721|gb|EAL38286.1| helicase-like protein nhl [Cryptosporidium hominis]
          Length = 916

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 98/639 (15%), Positives = 192/639 (30%), Gaps = 137/639 (21%)

Query: 133 LNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           +   Y +    +   ++D+ DLI    +LL        IR KI     +I  DE QDTS 
Sbjct: 284 IYYLYNKKMVAHKPYLVDYTDLITLALNLLGNNI---NIREKIQDSYPYIFCDEFQDTSK 340

Query: 191 IQWEVIRSLTEDFFV----------GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           +Q++++  LT+               K+ +     +  VGD+ Q+IYS+ G E     + 
Sbjct: 341 LQFKILELLTKSIINKKRKFEAEKFTKDQNLRRGGITVVGDDDQAIYSWRGVETGVFSQF 400

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
             + +           +I L  +FRST  I+ V + +    +        S         
Sbjct: 401 SSMFKDNIN-------LIYLSTNFRSTKSIIQVSNNLVKKNKFRISKLLISNNDFGVEPV 453

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT------IS 354
                  +     + S           SW+ +        +   + + ++        + 
Sbjct: 454 VYYFPKQIDEMHWIASTILLLKMKFNYSWSEFAILARTNDTLFYVEKLLSDKKFLISCLE 513

Query: 355 NMIGTDTIFSNGKKRVIQAK---DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +  T+ I +      + +    D  V    R  +  ITF               +D   
Sbjct: 514 MLQDTENINNERGWFKMISNDLLDFDVDQLSRYKSAEITFPLE--NTSRNNPKFASD--- 568

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY-- 469
           L     I D+++  R I+ +  D  F+ +   P     ++ I  I     +  ++     
Sbjct: 569 LLYRAEILDILSYCRLIIDETADDCFLRICNRPKRGIGDNAIKLIEEYGAKGISLMRKST 628

Query: 470 ------------------------------------------IQKFANCGISKFQHVIKY 487
                                                       K     I+  +  + +
Sbjct: 629 QPLNGICELDTSVYGNTTNVYTSIVSVCRMLVSSKFETKSKINYKLHKKSINSIKAFLDF 688

Query: 488 IHELIHIAQFC-SPHDFFTLILGAKKG---------RQQFISRFGNEVIDVLDEFLNFTL 537
           + +L    +   S  +   LI+              + +      + ++D ++     + 
Sbjct: 689 LDDLKQFIKNKVSVSEIINLIVKKMNLDNQNEIMVKQSKNKRLLQSNLVDNINSSTEDSE 748

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSA---------------------NHNEVRIMT 576
           +      S+L  + + L+   P                                ++ + T
Sbjct: 749 KINSRKLSTLNSISTLLKYSEPYTPNDEQPTGYECLLCFLQDASNGLLQIKKGEKISLST 808

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE  VVF+     +VF                             R +   ++ 
Sbjct: 809 IHRAKGLEWKVVFIPKFVDKVFP--------------------------LYRESENLEIK 842

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               + T EE  R++YV  TRA ++L I    N      
Sbjct: 843 NEFDEITIEEERRIVYVAFTRAKERLFISVPLNVGKPSP 881


>gi|309810402|ref|ZP_07704236.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
 gi|308435642|gb|EFP59440.1| UvrD/REP helicase [Dermacoccus sp. Ellin185]
          Length = 1117

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 109/984 (11%), Positives = 266/984 (27%), Gaps = 174/984 (17%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
            R G + +E      + L        + ++   +  +  G    +   + L+         
Sbjct: 129  RVGGTSSEPIARTPQALAFGILRMRAAMDDLPAPRLLAGPEQDVVLKELLEGHRLGLGAA 188

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              +    +  LT +                 +L++ + ++ +    +          +  
Sbjct: 189  PAWPEDLAEALTTRGF-------------RNELRDLIMRAVEW--DVSSDHLRRLGAEHG 233

Query: 124  LASLTLAKYLNAHYEE--AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                  A  +   Y++  A  +    D   ++      L++ +    +R ++  ++  ++
Sbjct: 234  RDEWIAAADVLDEYDDVTALSRPGAFDPAWILGAAAQALRENET---LRERVRAQLRLVV 290

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            ID+ Q+ +      +  L              + L  +G+   ++ +F GA+P+      
Sbjct: 291  IDDAQELTRASVGFLTELVG----------PGQRLVLLGNPDVTVQAFRGADPR------ 334

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                ++            L    R    +  VV++V +   +  G+         HRS  
Sbjct: 335  --YLEQVAAQHGASRRFVLGYGHRQPRRLAEVVERVTARIGSVDGI--------AHRSVV 384

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                G V +        +                              A  I+ ++    
Sbjct: 385  TRPGGGVDVALLRSGAQE------------------------------AAHIAGVLRRAH 414

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            +        +  KD+ V+VR    T  +       K    +         L D  A++  
Sbjct: 415  LKD-----GVAWKDMAVIVRAAAGTSALRRALNAAKVPVAVP---PASLALRDEPAVRPF 466

Query: 422  MALGRFILS--------QEDDLSFVC-----------MLKSPLFNFSEDDIFKICTQRHE 462
            +     + S          D  +              +L SPL       + ++      
Sbjct: 467  LHALEIVTSRTRGSEQAPVDGDADASRAGVSADLALDLLTSPLGGADPVVLRRLRRLLRR 526

Query: 463  TET----------------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             E                 +   +        +  + V + +       +   PHD    
Sbjct: 527  EELAAGGNRVSDELLGACLLEPALLVSLGPEAAPARRVSRVLAAGAAALRAAPPHDDAEH 586

Query: 507  ILGAKKGRQQFIS--------------RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            +L                         R   ++  +L  F       E+   + + + + 
Sbjct: 587  VLWQMWQASGLAEAWEANALAGGISGTRADRDLDALLALFAAAAAFVERLPGAGVADFLD 646

Query: 553  ELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
             +           A + + + V ++T   + G E   V +      V+    ++   +  
Sbjct: 647  HVRSQDVPGDRLVAAAPDEDAVALVTAAGSAGGEWHTVVVAGVQEGVWPDLRLRGSVLGS 706

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                D              +     +   + + + +  R   + M+RA + +++    + 
Sbjct: 707  EDLVDIL------------SGRGRSLPARQAAVRHDETRQFAMAMSRAREHVVVTAVRDE 754

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT-------- 722
              +          +   +  +  R                         +          
Sbjct: 755  DEQPSVYLDIVDPLAPGAAADAMREFTPVARPMTLAGLVAEARRMLADQDEAVRDEGARR 814

Query: 723  ---PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                 E +           +  +          E   ++PS I+   +  L  LL+ N  
Sbjct: 815  LARLAEHDVPGADPEQWWALVSRSDDRPVRPPQEWVRVSPSKIEGFHRCGLNWLLTTNGG 874

Query: 780  F-------NRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITR 830
            F         G ++H+L +     P    +     +             E       + +
Sbjct: 875  FGPSVGASTIGTLVHELAEEFADEPALMDEALEKRWPRLGLGDSWVSRGEKARAQSMVKK 934

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHV 889
            L     +  A +     E +   + +       ISG ID++    +  + + +YKT    
Sbjct: 935  L--QGYLGDAAATGWAGEAA-ERRFSAIVGRAKISGSIDRLEHHPERGLRVIDYKTGSSK 991

Query: 890  PQEIEHIPYTHIAQLSIYEKILKD 913
            P++ E        QL+ Y+  L+ 
Sbjct: 992  PKDEEVAA---HPQLAAYQAALEA 1012


>gi|332178959|gb|AEE14648.1| UvrD/REP helicase [Thermodesulfobium narugense DSM 14796]
          Length = 1040

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 111/759 (14%), Positives = 241/759 (31%), Gaps = 91/759 (11%)

Query: 162  KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
              +    I++ +   + HILIDE QDT  +QW  I+ L +D            ++FAVGD
Sbjct: 356  NEETITKIQFCLGSYVYHILIDEFQDTDEVQWACIKKLCDDLLSRNG------SVFAVGD 409

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             KQSIYSF GA         +I ++      +   ++ L  +FR+   I+  +   F   
Sbjct: 410  IKQSIYSFRGAN-------YKIMKETIEKPTKNTFLLNLEKNFRTDGIIIENIKNFFQRD 462

Query: 282  ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
             + +    ++ + ++              +     ++      Q   +    D    +S 
Sbjct: 463  ISDKVSETNNISGLK----------DFIQFPLEERKNSGFFKSQIVFFDEPEDKEILDSK 512

Query: 342  ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                       I  +            +  +  DI+VL R       +         +  
Sbjct: 513  DV--------RIGTLKTELLNLIYELSKRYKLSDIVVLARSNSQVNKVATWL----IENG 560

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             +VV      + D   I+++++L +FI    D+      L   +F   +           
Sbjct: 561  YNVVSESSMDIRDRKIIREIVSLLKFIELPNDN------LNFSIFILGKIMNKIFVDNNI 614

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                + E+I  F N   + F        +L +         +F  I         +    
Sbjct: 615  SQNEIREFI--FLNRNKNLFNSFKNNYIDLWNK--------YFKEIYFKSGYISMY---- 660

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                   L   +    +  +N       L+  LE          +   +  +++ +    
Sbjct: 661  ------NLITLIYSIFKIPENFPEESAYLVKLLEIISE---IELTGYVDINKLLYLIEQD 711

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
              E   + + +    +      K M +  +   +  + I +  +++   +++        
Sbjct: 712  KSEFFRIEISNFTDAL------KLMTVHKAKGLEFPVVINVIDAENNYALINKKKLDYSF 765

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
               EE     +     +   L I        +K +               D+        
Sbjct: 766  FIYEEKTN--FEADKSSLSLLHIT---REVAQKNNFLNEILSDKDVDCILDDLNLLYVAM 820

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                 + +           +     E+   +      +    F      IN  + + P  
Sbjct: 821  TRAKFELYNFMCIKKIETSDNLYNLEKEDGEKKKIIDVEVNDFEFDNFKINYEFTVEPLG 880

Query: 762  IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
            I+           +D  +  RG++ HK+L+ I    +      IT     + KL+  +  
Sbjct: 881  IEQN------WKKNDIASIKRGILFHKILERIKYKEDLFGLENITKLYENDIKLFEPE-- 932

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
              +   I+ ++ N   +   S    +++         K ++    RID++ I +  I++ 
Sbjct: 933  --IAKKISSIVMNEQFSKFFSP--LNKIFTEVDFVDKKGNLF---RIDRLVIEKDIIYVV 985

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
            +YKT              ++ Q+ +Y K++K+ Y   ++
Sbjct: 986  DYKTS-LKEYYKNFEKKNYLRQIKLYMKLVKNFYRRSTV 1023


>gi|300741872|ref|ZP_07071893.1| helicase, UvrD/Rep family [Rothia dentocariosa M567]
 gi|300381057|gb|EFJ77619.1| helicase, UvrD/Rep family [Rothia dentocariosa M567]
          Length = 1172

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 125/1045 (11%), Positives = 273/1045 (26%), Gaps = 170/1045 (16%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS--------METGNPTILKKAQT 52
            +++     ++ S        W    F +        L         + +G    +   + 
Sbjct: 48   VRDELARRIDRSMSTAPTRAWAAYAFDLLRRAHVSGLLPGVEFAPKLLSGPEQDVMIGEI 107

Query: 53   LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
            L    + +    R+               + + T+   ++  D  +++ +       +  
Sbjct: 108  LAGHREGKGAAVRWPA----------DLHEALGTRGFRQEIRDFFDRIAE-----YALTA 152

Query: 113  RFNTYKMFKSTLASLTLAKYLNAHYE--EAKKKNCVLDFEDLIINTND-LLKKRDVSAWI 169
                         +      L   Y+     +     D   LI      LL   +     
Sbjct: 153  EELENLAQTLDRPAWHSVAQLYTEYQQIRRLRAPNAYDPAALIHEACAFLLANPE----Y 208

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTE-------------DFFVGKNTHSSPRTL 216
              +     + ILID+ Q+ S   + ++R L                    +   +    +
Sbjct: 209  LREERARFDLILIDDAQELSPSVYRLMRILVGREPGQVLAPYRGDQREALEAAFTPSARV 268

Query: 217  FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI-LTVVD 275
                  +  +  F GA P       +I  +            EL  S+   A I L   +
Sbjct: 269  LITCCTETVVQGFRGARPDLAATLPQIFPE--------LQREELKTSYCMNAPITLAWRN 320

Query: 276  -----KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
                  V +     +      +        R+   G +          +        S  
Sbjct: 321  IARRLPVIANAPTPREPQTAPSKYEESALLRLSDDGDLLDPRHSDELPEGVFGYLLGSPQ 380

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
               + + Q      L R  AY  S +I          +RV+ A  I  +           
Sbjct: 381  DEANQVAQLLLEDYLYRGAAYARSAIIVRSGTEVTRFRRVLAASGIPTVTGAALVPVRDE 440

Query: 391  FLTRFLKNDYKISVV----GNDRFILTDHLAIKD-------------------------- 420
               R   +   + V       D   L DH                               
Sbjct: 441  PAVRPFLDALSLLVYARQQSADYLKLPDHNDFDGSLTENITSEAVTEEGTRSADDEAEKL 500

Query: 421  -LMALGRFILSQEDD------LSFVCMLKSPLFNFSEDDIFKICTQRHETE--------- 464
               +L   +  +          + + +L S L   S  ++ ++  Q    E         
Sbjct: 501  ARQSLADVLAEENRTNPGSGAHNAITLLTSRLGGASSMEVRRLRQQLRAAELRAGGHRCS 560

Query: 465  ------TVYEYIQKFANCGISKFQHVIKYIHE-LIHIAQFCSPHDFFTLILGAKKGRQQF 517
                   +       A    +  + V + +      + +  +  +     L    G ++ 
Sbjct: 561  DDLLLGALLNPQALPAQGIGAAVRRVARVLAAGHKALTERGANAETVLWALWQASGLEKI 620

Query: 518  ----ISRFGNEVID---VLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS 566
                 ++ G E       LD          R  +Q   SS +  +  ++     +    +
Sbjct: 621  WVTESAQTGPEAERAHRNLDAMIGLFEAATRFVDQMPGSSAELFLDYIDAQDLPMDTLAA 680

Query: 567  ANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 + V I+T   A G     V++       + +  ++   +      D         
Sbjct: 681  RGKRYDAVEILTPALAAGRHWQTVYVCGLQDGTWPNTTVRGSLLKAGELTDICDMGIA-- 738

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR----- 679
                       +    ++ + +  R+    ++RA+++L++   S+T +            
Sbjct: 739  -----AAQQVRMSDRVRAVRHDELRMFSTAISRANERLVVTAVSSTEDAPSEFFDILVPD 793

Query: 680  -----------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
                                ++   +   D          +       A        +  
Sbjct: 794  ARTADITHVRRPMTLRALVAELRRYAQAQDTDPTLANAAAAQLNRLAQAGAPGAAPEQWW 853

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--- 779
             L    T +           L +   +       ++PS I+T  K+ L+  +S  +    
Sbjct: 854  GLLPLSTEQNAFISHPHRDGLSTDSGDPEKLTVPVSPSRIETIHKSPLDWFVSAARAEAQ 913

Query: 780  ----FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
                 + G +IH + +          +  +    +  A L    E + +     ++++  
Sbjct: 914  TDTSRSLGTLIHAIAEEYPDADYMTLRGQLEERLSTLA-LPDTWEGQQIRERAEKMVDKL 972

Query: 836  M--MTTAMSCDSYSEVSVSGKINCPKKD----IIISGRIDQISI-SQQNIFIFEYKTHHH 888
               +   M  D    V V G              ISGR+D++         I + KT   
Sbjct: 973  AVYINEIMPGDHRELVGVEGAFRVLVPGDTVNAQISGRVDRLEKTEDGRYVIVDLKTGKT 1032

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKD 913
             P     I     AQL+ Y+  ++ 
Sbjct: 1033 KP-NKNQIAEH--AQLAAYQVAVEA 1054


>gi|255326998|ref|ZP_05368074.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296215|gb|EET75556.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
          Length = 644

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 82/546 (15%), Positives = 156/546 (28%), Gaps = 141/546 (25%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   YE+ K +  ++DFED+++ T  +L++ +    +   +  +  H ++DE QD S 
Sbjct: 184 QRIFQAYEDLKDERNLIDFEDVLLLTIAMLEEDE---KLAATVRNQYRHFVVDEYQDVSP 240

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++                   +  VGD  Q+IYSF GA  + +L   R  +     
Sbjct: 241 LQQRLLDVWLG----------GRDDICVVGDASQTIYSFTGATSRYLLDFARRYR----- 285

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  ++L   +RS + ++ + +++ +                   + R     +   
Sbjct: 286 ---GAHTVKLTRDYRSHSQVVELANRLLA-------------------ARRPHPDSSPHS 323

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W   +     +       W  Y D           A  IA  I ++I  D          
Sbjct: 324 WAPPLELMSQRGPGVDVEWFGYAD-------DEQEAAGIAEDIRDLIEKD---------G 367

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +   +I VL R    +  I            I           +   +K  M   R    
Sbjct: 368 VPPSEIAVLFRTNAQSAAIESA----LAAAHIPYQLRGAERFFERPEVKQAMLALRGSAK 423

Query: 431 QED-DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             D         +  L      +   +       +  +E +    +      QH  + + 
Sbjct: 424 STDGTEDVTRYTRDVLGGLGYKEEGPLSGGATRQK--WESLAALVHMVDMMAQHRQEQLQ 481

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           E     +   P                                             ++ E
Sbjct: 482 EHRANPRPGVPEPL----------------------------------------PLTMHE 501

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           +++ L           +   N V + ++H AKGLE   VFL      +            
Sbjct: 502 VVATLNHRSE---FNDAPQVNGVTLASLHAAKGLEWDAVFLCGLNEGLMP---------- 548

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                    +         +E  RLLYVG+TRA   L +     
Sbjct: 549 -------------------------ITFATTPDEVDEERRLLYVGITRARKYLWLTWTMT 583

Query: 670 TSNEKK 675
            +   +
Sbjct: 584 RTVGGR 589


>gi|169630597|ref|YP_001704246.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977]
 gi|169242564|emb|CAM63592.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus]
          Length = 1058

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 104/920 (11%), Positives = 240/920 (26%), Gaps = 127/920 (13%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRD 112
           +  +  +       LL         +   ++         +  +++ + +  +  +  R+
Sbjct: 117 RLITAAEQDSIVRELLCGNAEDNSGSWPASLRPALATAGFATGVRDLMARCTERGVDARE 176

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE------------DLIINTNDLL 160
                +  +           L   YEE       +               +L+ +    L
Sbjct: 177 LRAIGR--RHNRPEWIAVAGLAREYEEVMLLRSAVGMAAPQATVPALGAAELVGSA---L 231

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +   V   +       I  +L+D+ Q        ++R L E                  G
Sbjct: 232 ETFAVEPGMLAAERDRIELLLVDDAQHLDPQAALLVRLLAE----------RAGFCVIAG 281

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  Q+++ F GA+ + +            +A  + ++IEL  S R  A I  + + V   
Sbjct: 282 DPNQTVFGFRGADTQLLQV----------SADSRTTMIELDGSHRCAAPIAELANSVARR 331

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                      ++  R           V+L        ++         +   D +P   
Sbjct: 332 LPG--------SSPARVIHGVENGPAAVRLAAVPTETAEASLVVDLLRRSHLIDGVPWSR 383

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
            A             ++ +         R +Q+  + V                 L    
Sbjct: 384 MAV------------IVRSVPRSGAALCRALQSAGVPVHAESYDGPVASVPAVHALLLA- 430

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
              V      +  +         LGR              L         +       + 
Sbjct: 431 ---VSAAQGGVTHEDAVTLATGPLGRV--DPVALRRLRRQLLRAEEAAGGERGSAELLRA 485

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQF-- 517
              E    ++    +   +  + V   I       A   S  D           ++++  
Sbjct: 486 VLVEADETHLAALTDIQAAPLRRVRAVIGAAREATASGASVLDVLWAAWTRSGLQRRWDG 545

Query: 518 ----ISRFGNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANH 569
                   G +    LD      +    +  +     +  LI  +       +R      
Sbjct: 546 LSQRGGPLGAQADRDLDAVSSLFDLASEHVARTPGIGVTGLIDHIRSLALVGQRTTRLEP 605

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + V I++ H A G E  VV +      ++ +  ++   +      D    I        +
Sbjct: 606 DAVAIVSAHAAVGREWDVVAIPGVQEGLWPNTAVRGGVLRTQELMDVLAGIEHAAHVDGS 665

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
            +     + L               + RA+ +++I    N + +           + +  
Sbjct: 666 AVALAEERRLLLLA-----------VGRAARRVLITAVENENADMGGGPAMASRFLTELM 714

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
                    +      +   +                 E +          +        
Sbjct: 715 AAHPEWVISEYRPGAAQSRVLTAANLVGELRAVVTAPVEAVTDARRRAAARQLARLAAAG 774

Query: 744 -----------------FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT------- 779
                              P+    + P  ++PS ++T     L  +L  +         
Sbjct: 775 VPGADPESWYGLGDVSDERPLWLAEDGPVRVSPSNVETLMACPLRWMLERHGGTDLTDPR 834

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
              G ++H+L+ V     +   +    ++  ++         +N L     LLE      
Sbjct: 835 RALGTLVHELVGVHAEDSDAMCRALDKAW--ESMPFESQWYARNELRRHHELLEAFTTWR 892

Query: 840 AMSCDSYSEVSVSGKIN-----CPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEI 893
           A +    +EV     ++       +  + + GRID++    +    + + KT      + 
Sbjct: 893 ASTRGELTEVGREIGVDGVLSRAGQPQVRLVGRIDRLERDAEGRPVVIDIKTGKSPATKD 952

Query: 894 EHIPYTHIAQLSIYEKILKD 913
           +       AQL+ Y+    +
Sbjct: 953 DAQQ---HAQLAAYQVAAAE 969


>gi|288917908|ref|ZP_06412268.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288350697|gb|EFC84914.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 1157

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 76/612 (12%), Positives = 165/612 (26%), Gaps = 111/612 (18%)

Query: 102  KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
            +++   +         +    +      +  + A Y+ A +   ++D +DL+     LL+
Sbjct: 652  QARRRVVAELADLKRRRALGRSYRDHP-SAGVLARYDAALRDRNMVDLDDLVTLPLGLLR 710

Query: 162  KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                   +  +  +   H+ +DE QD   +Q+ ++R L                L A+GD
Sbjct: 711  SSPE---LAREYQRRWRHVWVDEFQDIDEVQYGLLRELC----------PPDGDLCAIGD 757

Query: 222  EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
              Q+IYSF GAE    LR ++               + L  ++RST  I+       +  
Sbjct: 758  PDQAIYSFRGAEVGFFLRFEQD--------RPGARRVSLTRNYRSTPTIVGAALDAIAPS 809

Query: 282  ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                     + T            G V +              +  +     +     +S
Sbjct: 810  TFVPDRELRAVTG-------QDTDGPVVIRP------CGSEAEEAIAVVDLIEEALGGTS 856

Query: 342  ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               L                     ++  +   DI VL R  +    +            
Sbjct: 857  FHSL-------------DSGAVDGSERGKLSFADIAVLYRTARQAEPVVDAL----LRRG 899

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
                 +    L +  A+  L+A  R                                   
Sbjct: 900  FPFRQHGHTPLAELPAVGALLADLR----------------------------------- 924

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
                  E   +      +  +     + +L   +         +       GR    +  
Sbjct: 925  ------ERAGEPPRSVSTSLRDAAARLTDLAAGSDTALGAVLRSEAADGGGGRSPGAAE- 977

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                   L   +         + + L   ++ +               + + ++T+H +K
Sbjct: 978  -------LRRAVELLAPAAAAAGTDLGSFLTAVALGTEVD--DLDPRADRISLLTLHASK 1028

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE  +V +V     +   +    +    + +   G       + +     ++       
Sbjct: 1029 GLEFGLVIIVGCEDGLLPLRWGGPVPAAGTTSTAAGPTAAGATAAAAVAAAAEAEAEE-- 1086

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                   RLL+VG+TRA  QL++   +      +  Q      +          +     
Sbjct: 1087 ------RRLLFVGITRARTQLVLTHATRRRRGGEVVQTGPSPFLSAIDGRYLEKRTGSAP 1140

Query: 702  NSINKDEWIAYE 713
            ++          
Sbjct: 1141 SAAQVRRRSEGR 1152


>gi|90578950|ref|ZP_01234760.1| hypothetical protein VAS14_04573 [Vibrio angustum S14]
 gi|90439783|gb|EAS64964.1| hypothetical protein VAS14_04573 [Vibrio angustum S14]
          Length = 773

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 92/653 (14%), Positives = 197/653 (30%), Gaps = 128/653 (19%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                    ++E  +K+   L F+D ++ + +LL   +    +R    Q+I  +++DE Q
Sbjct: 169 YHFIIEAYWNFETIRKERKQLFFDDWLVESVNLLTNNEA---LRAYYHQQIQFMVVDEFQ 225

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D +  Q+ +++ L  +             L AVGD  Q IY + G+ P+ +L  ++    
Sbjct: 226 DINTAQYRLLKLLLGE----------QAQLVAVGDVDQCIYKWRGSAPQFMLNFEQDF-- 273

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    +   L  +FR    +      + +  +           TI H+S       
Sbjct: 274 ------TPATTYSLSHTFRFGHSLALAASHLIANNKQRF----HDFQTISHQSVA----- 318

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                      D+  +    +     IA +I+  I         
Sbjct: 319 ---------------------------DTPIEVIGTARQVGEIAQSIAEYIEQGG----- 346

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   D+ +LVR+   T L             I        +L++   +K L+ + R
Sbjct: 347 -----TPSDVAILVRRWSQTMLFELAF----LTKNIPFYMPVGSVLSNSREVKLLLDVMR 397

Query: 427 FILSQEDDLSFV-------CMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGI 478
           F   + +             M+  P        +  +C +  ++    +  + K      
Sbjct: 398 FSTGRYNQFQPYEKASLVFNMMSFPHCYVPNASLRPLCDELANKPIEQWLEVVKKTEKLQ 457

Query: 479 SKFQ-----HVIKYIHELIHIAQF--CSPHDFFTL--ILGAKKGRQQFISRFGNEVIDVL 529
                      ++ +  L     F     +  +     L     + +  +    E ++ L
Sbjct: 458 PALNLDNFTSRVELLMMLRRKGGFKALDVYRQYRRDSELDNWIWKTEATASEIEEAVERL 517

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           D         +Q+   +LQ      ++      R   +  + V++ T+  AKG E   V 
Sbjct: 518 DSVETVLASMDQDCEKALQYFEYYTQRSDS--LRQSESTTSNVQLTTIFRAKGCEYSQVH 575

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L       F + +   + I                                 +  EE  R
Sbjct: 576 LPYWDKDAFPYVNRSSVGIS--------------------------------ADTEEERR 603

Query: 650 LLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           L YV +TRA  +  I      S +    +K    + + +   +    E   ++ L  ++ 
Sbjct: 604 LAYVAITRAKHKAKIYYSVENSKKDTYVRKDKNASQFILESKATLAQEVGPQLYLEGALP 663

Query: 706 KDEWIAYE--WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
            ++    +  +             E++++         +L       + +P  
Sbjct: 664 FNKSPIVQGYYKRLGRIEQMQAAPESVEREQPAVGKNGQLSYSYLWAVEQPLP 716


>gi|152996458|ref|YP_001341293.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
 gi|150837382|gb|ABR71358.1| UvrD/REP helicase [Marinomonas sp. MWYL1]
          Length = 759

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 105/683 (15%), Positives = 197/683 (28%), Gaps = 141/683 (20%)

Query: 14  ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
           E + K L    +F+   +  + +  M+      L++   L  A           +L    
Sbjct: 67  ERLSKRLMSAGHFRSPSVMTFHAFGMK--FCRRLEQQGWLSAAKLITDDFSLVKMLREAL 124

Query: 74  --LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L +       +  ++  +      +++K S      + +        K   A      
Sbjct: 125 QRLVRNGEKIAMLDEKDWLEDVLLFVDQVKASDQPAQIVFEALGWSNERKFFPAL----- 179

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSL 190
                 E+ +K+N +  F DL+ +  +L+ + D +  +R + +  +  ++LIDE QD + 
Sbjct: 180 --YDELEKLRKRNNIRFFADLLSDPYELISQLDEAERLRVRGLVPDFRYLLIDEFQDINP 237

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++ L            +P     VGD +Q IY + GA P+          +   N
Sbjct: 238 CQYELLKLLY----------PAPCQWMIVGDVQQCIYEWRGASPEI---MASQFDQDFAN 284

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                    L  SFR    +  +   V S  +    L   +    R   +R  + G   L
Sbjct: 285 ----VVTYPLSTSFRFGHAVGLMASSVISEND-PDALVIGAGERTRVSFARAPKTGKALL 339

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                                     +   +             
Sbjct: 340 ----------------------------------------GELKAWVEEGRAL------- 352

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL- 429
               D  VLVR   D   +            +    +    L ++  I+ LMA    I  
Sbjct: 353 ---SDTAVLVRLYSDMVPVQLAL----MHKGVPYQLHGDSPLLENRQIRMLMAYLAVIAG 405

Query: 430 ---------SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK--FANCGI 478
                      +D      +L  P    S      +  Q  ++  +   I +        
Sbjct: 406 GLETSSTFFHPDDIEY---LLMIPSLGASMAQRKTLIQQAKQSPHLLPQIIESVADATDG 462

Query: 479 SKFQHVIKYIHELIHIA-QFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEF 532
            + + + +    L  ++     P       L      + F S         E I   D F
Sbjct: 463 WRAKKLYERADWLRSLSIYRTDPAQGLAHTLEKLGIYRYFESTSSKDIQTQEKIATCDAF 522

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           + +          S+ + ++ L +               V +MT+H +KGLE   V L  
Sbjct: 523 MAYVRGV-GGDAKSILDQLATLNEKQTDDVH-------GVHLMTIHKSKGLEFDQVLLSG 574

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                F                               +     I     S      RL Y
Sbjct: 575 LQEGRFP----------------------------YYDEDLSAIDKQAASDLASERRLFY 606

Query: 653 VGMTRASDQLIICKHSNTSNEKK 675
           V +TRA  +L++ +  +    K+
Sbjct: 607 VAITRAKQKLVLLETPSADEHKR 629


>gi|87302917|ref|ZP_01085721.1| putative ATP-dependent DNA helicase (PcrA) [Synechococcus sp. WH
           5701]
 gi|87282413|gb|EAQ74372.1| putative ATP-dependent DNA helicase (PcrA) [Synechococcus sp. WH
           5701]
          Length = 641

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 96/647 (14%), Positives = 201/647 (31%), Gaps = 129/647 (19%)

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             E++  ++S F   +     K         +   +    + S  +     D++      
Sbjct: 108 DPEDQKDMMSMFRGKRPKEFPKAP-------ELRSIYSFCRNSSKKLGDYLDQY-----L 155

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                     K +   Y+ AK++  +LD +D++      L+   V++ I        + +
Sbjct: 156 PKHKPFYEQIKQIFIDYQAAKRRQNLLDLDDVLDVVARNLENPAVASTI----GNSYDAV 211

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE+QDT+ +QW +++ L               +LF VGD+ Q+IY+F G++ +     
Sbjct: 212 LVDEMQDTNPLQWRLLQPLV-----------KHTSLFCVGDDAQAIYAFRGSDYR----- 255

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                   T        + L  ++RS ++ L + + +                       
Sbjct: 256 ---FIHDFTELVPNSEKLTLTQNYRSPSEFLGISNWLLKDSSINYDK------------- 299

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                   +LW            P    ++  F+           A  IA  IS      
Sbjct: 300 --------ELW-----SELEGGKPNMRIFSDPFEE----------AEFIADKISE----- 331

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                   R I  +  L++ R      +            KI V     F       ++D
Sbjct: 332 -----DHGRGIPYRSNLIMFRS----SVWRKALDSALAKRKIPVTYYGGFSFLQARHVRD 382

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           +++  R + +  DD++++  L+        +   +I  +  +   + E I         K
Sbjct: 383 IVSTLRILHNPVDDIAWLRYLQV-FPGIGGEGASEIVNRFADLNALAERI-DLLKASDPK 440

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
           F+     +  +         +    +    +    +            +           
Sbjct: 441 FRRPASAMQTIAQKISANMANLIGEITAILEDEFSKLYRDEWPSRKADVPILQALA---- 496

Query: 541 QNSYSSLQELISELEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                S+   +      P T        +N + V + T+H+AKGLES +V++       +
Sbjct: 497 -EREDSISTFLESYALNPFTEGFQRGGDSNTDYVIVSTIHSAKGLESDIVYVPALQVGHY 555

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              + K                                    +   EE  R LYV +TRA
Sbjct: 556 PPSYTKS-----------------------------------QDEFEEERRCLYVALTRA 580

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
             +L + K    + ++      ++         D  +K ++  N+ +
Sbjct: 581 KTELNLSKALIATYQRIPKGSAYFLQEMPEQLVDLEIKHVESVNAPS 627


>gi|329946348|ref|ZP_08293915.1| HRDC domain protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527324|gb|EGF54322.1| HRDC domain protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 706

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 100/761 (13%), Positives = 192/761 (25%), Gaps = 164/761 (21%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQ--ASQTQCIEERFSLLSSFFLTQKFTPQK 82
                ++   ++     G       A  L+Q        I  R   + +          +
Sbjct: 85  ARAAGEMRSRLADLGVPGVQARTFHAAALRQLTYFWPTAIGGRRPDIQAHKAPLVGAAAR 144

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEE 139
            +          DL  +++ ++       D          T  +         + + YEE
Sbjct: 145 RLGLPTDRATVRDLAAEVEWAKVTMTLPEDYAQAAVAAGRTGVAGQEAATVAQVLSLYEE 204

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           AK +  V+DFED+++ T  +L        +  ++  +  H ++DE QD S +Q  ++   
Sbjct: 205 AKSERGVIDFEDVLLLTIGILLD---REDVASQVRGQYKHFVVDEYQDVSPLQQRLLDLW 261

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                         R L  VGD  Q+IYSF GA P  +       +            + 
Sbjct: 262 LG----------RRRQLCVVGDVSQTIYSFTGATPAFLTGFTTRYE--------GARTVR 303

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L   +RST  ++++ ++V S               +   + R G                
Sbjct: 304 LSRDYRSTPQVVSLANQVLSRSRREGDGLHLPAGAVELVAQRPGGPAV------------ 351

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                                     A      +  +              +   +I +L
Sbjct: 352 ---------------RFEAHDDDIAEAEGAVAQVRRLQAAG----------VPLSEIAIL 386

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    + +            +I  +        +   +K  MA+       E       
Sbjct: 387 YRTNSQSEVFEQAL----AGAQIGYLVRGGERFFEREEVKRAMAVILGAARTE------- 435

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
                     +  +     Q   T    E   +         +     ++ L        
Sbjct: 436 ----------KATLTGDLGQDARTVLSREGWSEEPPAPRGAVRERWDALNAL-------- 477

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                                            +       Q   + L    +EL +   
Sbjct: 478 ---------------------------------VALADEMVQTRGADLDAFHTELRERAD 504

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                       V + ++H AKGLE   V LV     +                      
Sbjct: 505 AQNAPTVEG---VTLSSLHAAKGLEWDAVILVGACEGLLP-------------------- 541

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                          +     ++  EE  RLLYVG+TRA + LII      +   ++ ++
Sbjct: 542 ---------------ISLAEGQAAIEEERRLLYVGVTRAREHLIISYARARNVGGRAARK 586

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
               +              +  +  +  E      +     N P       ++L   +  
Sbjct: 587 PSRFLDGLWPTAHGGRDASRRRSRQSAKERSRQSAADFEASNDP-RTIALFEELRAWRSQ 645

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             K  S     +     L    +         SL+      
Sbjct: 646 VAKERSKPAYTVFADATLRDIAVVKPTSLPQLSLIRGVGAT 686


>gi|312144169|ref|YP_003995615.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
 gi|311904820|gb|ADQ15261.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus']
          Length = 736

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 98/697 (14%), Positives = 227/697 (32%), Gaps = 82/697 (11%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFSLLS 70
               LP  +   +    SL++E               +  ++ ++    + +  +++  +
Sbjct: 74  AAKGLPRSRGYSVKTLHSLALEIIKEKPEARLINQDFELIESGRRFRWIKQLSSKWAAEN 133

Query: 71  SFFLTQKFTPQKNIIT-QEINKKSPD------LKEKLKKSQDEFIKIRDRFNTYK-MFKS 122
           +  L   F  +KN    ++ +K+  D      +   +   + + ++  +     +     
Sbjct: 134 NDLLLDYFNLEKNSYHFKKYSKRWKDEDFPAYVSSMISYFKLKLLEADELREMIRYSNLR 193

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
               LT A  + A Y+    ++ +LDF+DL+ ++  LLKK         +I  + +++  
Sbjct: 194 KRNILTPAADIYAEYQFKLAQSGLLDFDDLVQHSLKLLKKDPD---FAERISAQYSYVFE 250

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY-SFHGAEPKRVLREK 241
           DE QD++  Q E++  L  +           + L  VGD  Q+I  SF  ++P+      
Sbjct: 251 DEAQDSNQAQEEMLYLLAGE----------NKNLLRVGDSNQAITGSFTLSDPEIFRNYC 300

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R           +  +  + +S RS+ DI+ + + +    ++            ++    
Sbjct: 301 R---------SDEVKVQTMSVSSRSSQDIIDLANFLVDWSQSEFENRNLDALEKKY---- 347

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                 ++   +     + +    +    S+ +   ++   +  A R +           
Sbjct: 348 ------IEPVLEDDPVSNPEPEGYRIGIRSFKNWKEEKKFLARQAFRKSQE--------- 392

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                       K   VL+   +    I      L  +Y+++        LT+   I   
Sbjct: 393 ---------NSNKTTAVLMPIGRQLEEIGAEINKLGGEYQLAGSTASNVFLTEIEVILKF 443

Query: 422 ------MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
                     + +L++          +       E ++ +I             I     
Sbjct: 444 LTSPNSANNLKLLLNEVFLEDDQQARQLLEELLEEKEVAEIIFPTAGLSRDIFNITLRKK 503

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDF---FTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            G ++    +  +   +  +    P +        +     +         E   +L E 
Sbjct: 504 EGFNEIFKAVTKLQGWLEASMEIPPDELVLFLAERIELSGKKLALAQNLSLEFGRLLKEN 563

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             + L         +++ + +  +   T         ++V + T+H AKG+E   VF+  
Sbjct: 564 PAWRLDQLTAELPEIRDRLKQFAET-LTEMEGFETAPDKVSLSTMHKAKGMEWDTVFIGG 622

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK-----HLKKSTQEEY 647
             S  F H              +               +++D  +       ++    E 
Sbjct: 623 LTSDQFQHSDDDYFMGEKFYLSEEIKNPKAAARAELEYLINDKKEKNADKKARQQLIAER 682

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
            RLLYV +TRA + L +  H    +  KS    + D+
Sbjct: 683 IRLLYVAITRAKENLFLSSHKKRGSWDKSPAYVFSDL 719


>gi|300741869|ref|ZP_07071890.1| putative ATP-dependent DNA helicase (UvrD/REP) [Rothia dentocariosa
           M567]
 gi|300381054|gb|EFJ77616.1| putative ATP-dependent DNA helicase (UvrD/REP) [Rothia dentocariosa
           M567]
          Length = 648

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 86/541 (15%), Positives = 157/541 (29%), Gaps = 152/541 (28%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YE+ K +  ++DFED+++ T  +++  D    +   I ++  H ++DE QD S +
Sbjct: 225 RLFRSYEDLKDERNLIDFEDVLLLTVGIIEDDDA---LAATIREQYRHFVVDEYQDVSPL 281

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++ +   +             L  VGD  Q+IYSF GA  + +L   R  +      
Sbjct: 282 QQRLLDAWLGE----------RDDLCVVGDASQTIYSFTGATSRHLLEFPRRYR------ 325

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + L   +RS + ++ + +++ +        +E S                   W
Sbjct: 326 --GAHTVRLTRDYRSHSQVVELANRLLAARRPRPDSTEFS-------------------W 364

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              +     +    +  W  Y D   +       A  IA  I +++  D          +
Sbjct: 365 APPLKLISQRGPGVESQWFGYTDDERE-------AEGIAEQIQDLLEKD---------GV 408

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A +I VL R    +     L      D  I           D   IK  M   R     
Sbjct: 409 PASEIAVLFRTNGQSG----LLEAALADRGIPYQLRGAEQFFDRPEIKQAMLALRASAKS 464

Query: 432 ED-----DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            D           +L+S    ++E         R + E++   +    +   ++ + + +
Sbjct: 465 TDGSENVPRYVREVLES--LGYTEKAPQSAGAVRQKWESLAAIVSMVDHLEDTRIEDIAQ 522

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                  +    + HD    +                                       
Sbjct: 523 AEAAGAPVPHRLTVHDVVATLAHRL----------------------------------- 547

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                              +     V + ++H+AKGLE   VFL      +         
Sbjct: 548 ---------------ATQDAPVMEGVTLASLHSAKGLEWDAVFLCGLNEGLMP------- 585

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                       +         +E  RL YVG+TRA   L    
Sbjct: 586 ----------------------------ITFAQTSDEIDEERRLFYVGITRARKYLWFTW 617

Query: 667 H 667
            
Sbjct: 618 S 618


>gi|315452533|ref|YP_004072803.1| ATP-dependent DNA helicase [Helicobacter felis ATCC 49179]
 gi|315131585|emb|CBY82213.1| putative ATP-dependent DNA helicase [Helicobacter felis ATCC 49179]
          Length = 658

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 90/605 (14%), Positives = 175/605 (28%), Gaps = 181/605 (29%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           +EE K+++  +D+ DL++     +++  V              +L DE QDT+ +Q  ++
Sbjct: 168 FEELKQEHHYVDYNDLLLLFRQRMQEERV----------GFVEVLCDEYQDTNPLQDSIL 217

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            ++            +P +LF VGD  QSIY+F+GA+   +           T       
Sbjct: 218 DTI------------NPPSLFCVGDYDQSIYAFNGADISIIGNF--------TTKHPNAR 257

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           +  L  ++RS+  IL + +KV +        S +   T    +                 
Sbjct: 258 VFTLKKNYRSSPAILALANKVINHNPRLYPKSLEVAKTTSLSTP---------------- 301

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                              L +     +  R IA  I++                  +++
Sbjct: 302 ------------------QLLEFEELFLQYRGIARHIAS--------------RGNFEEV 329

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VL R            R L    K        +   D   ++ ++ +  F+   +D ++
Sbjct: 330 AVLFRNNSSADGCEASLRELGVPSK---RRGGGYSFFDAKEVRLILDVCAFLSHPKDMMA 386

Query: 437 FVCMLKSPLFNFSEDDIFKICTQ------------------------RHETETVYEYIQK 472
            + +L S           ++                             +T  ++E    
Sbjct: 387 SLQIL-SYGHGIGNAVARELYMALQILGDGDSKKGLLHPNNKDPYPQNKQTGGLFEEFFS 445

Query: 473 FANCGISK------------------FQHVIKYIHEL--IHIAQFCSPHDFFTLILGAKK 512
                  K                        ++ +   +      SP +  + I  +  
Sbjct: 446 TETAMRFKNHVPSTFNTHPLLKHPKLTATTASFLGDFFTLCQTHPLSPQENISHIYNSAW 505

Query: 513 GRQQFISRFGNEVIDVLD--------EFLNF-------TLRNEQNSYSSLQELISELEQY 557
            R    +    E     D        E            L +    Y SL+E +S +   
Sbjct: 506 FRAIMEN-LTKERAKNKDGSIDSRRQEIAAQKILRKITLLSDLAKPYKSLKEFLSAMALD 564

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                     N   V ++++H +KGLE   V+++D     F +                 
Sbjct: 565 AKENL-----NGEGVHLLSIHASKGLEFKEVYVIDLMEGRFPNT---------------- 603

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                                 +  + EE  RL YV  TRA D L +        +    
Sbjct: 604 ------------------KLAKQSGSLEEERRLFYVATTRAKDHLYLSYAKKDKIKDIEY 645

Query: 678 QRTWY 682
           + + +
Sbjct: 646 RPSCF 650


>gi|302536766|ref|ZP_07289108.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
 gi|302445661|gb|EFL17477.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C]
          Length = 772

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 86/564 (15%), Positives = 163/564 (28%), Gaps = 160/564 (28%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              K  +     +     +   YE+ K+   ++DFED+++ T  +L+       I  +I 
Sbjct: 222 AALKAGREAPRDMAEIAQIYGTYEQLKRDRGMIDFEDVLLLTVGILQD---RHDIAEQIR 278

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +  H ++DE QD S +Q  ++     D             L  VGD  Q+IYSF GA P
Sbjct: 279 AQYQHFVVDEYQDVSPLQQRLLELWLGDRDS----------LCVVGDASQTIYSFTGATP 328

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L  +    +         ++++L   +RST  ++ + + + +           +   
Sbjct: 329 DHLLNFRTRYPQ--------ATVVKLVRDYRSTPQVVHLANGLLNQARGR-----AAEHR 375

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           +   S R      V                             +       A  +A  + 
Sbjct: 376 LELVSQREPGPDPV---------------------------YAEYPDEPAEAEGVARRVR 408

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           ++I             + A +I VL R    + +          D  +           +
Sbjct: 409 DLIAAG----------VPAGEIAVLYRINAQSEVYEQAL----ADAGVPYQLRGAERFFE 454

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              ++  +   R         +       PL     DD+ ++  Q     +         
Sbjct: 455 RAEVQKAVLALR--------GAARSAGNDPLL----DDVVELGAQVRAVLS-STGWTAEP 501

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
             G    +   + +  L+ +A                                       
Sbjct: 502 PAGSGAVRDQWESLAALVRLA--------------------------------------- 522

Query: 535 FTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 ++   + L EL  EL++               V + ++H AKGLE   VFLV  
Sbjct: 523 --EDFARSRPGAGLAELTVELDERRAAQHAPTVQG---VTLASLHAAKGLEWDAVFLVGL 577

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +                                     +         EE  RLLYV
Sbjct: 578 TDGMMP-----------------------------------ITYAKTDDQVEEERRLLYV 602

Query: 654 GMTRASDQLIICKHSNTSNEKKSN 677
           G+TRA   L +    + +   +++
Sbjct: 603 GVTRARMHLTLSWALSRAPGGRAS 626


>gi|22297855|ref|NP_681102.1| hypothetical protein tll0312 [Thermosynechococcus elongatus BP-1]
 gi|22294032|dbj|BAC07864.1| tll0312 [Thermosynechococcus elongatus BP-1]
          Length = 774

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 90/611 (14%), Positives = 184/611 (30%), Gaps = 75/611 (12%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA----SLTLAKYLNAH 136
           +  ++T  + K +  +    +        +R      +   +  A     L +   L   
Sbjct: 170 KSALLTDILVKLAQTVISSARSMALTPHDLRQLSQQLRSPGAAEAEPYPFLEIGADLLEL 229

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y+    +   +D++++I+    LL+        R++  Q +  +  DE QD++ +Q +++
Sbjct: 230 YQHHLAQGEQIDYDEMILAAVRLLEGD---RQYRHEWQQRVYAVFEDEAQDSTPLQSQLL 286

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKF 255
             L  D   G+           VGD  Q+I S F  A+P                  Q+ 
Sbjct: 287 HLLAADHTTGQ------VNFVRVGDPNQAINSTFTAADPLFFNEFCD-------KCAQQQ 333

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
           +  E+  + RST  I+   + +                     + +  +    + +   V
Sbjct: 334 AFYEMTQAGRSTPLIIRAANYLVRWANY---------------ALKDQEPPFREQFIDCV 378

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           S    +       W    +    ++    + + +A  IS ++      S           
Sbjct: 379 SPTGLESGANPAPWGQGVEIARPKTVVETV-KHLAQRISQVLAAHPEAS----------- 426

Query: 376 ILVLVRKRKDTPLITFLTR--------FLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           + VLVR  +    +  + R               I ++          +  K+L+ +  F
Sbjct: 427 VAVLVRTNRQAEFVADVLRSPTDFNLDSDLCAQGIPLLDVAGIERRSQVP-KELLDILYF 485

Query: 428 ILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           +       +    L            ++ ++  Q      V+ Y                
Sbjct: 486 LHCPYSPAAVKAALTVLQERKRIPPQNLDRLAAQPE----VFLYPGPLDPPDEEPVLKAR 541

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF--TLRNEQNS 543
            Y H L++     S     T            ++     V  ++ E      T   E+  
Sbjct: 542 HYCHCLLNARLELSLFPLITYCAQELGYDAAELA----TVDRLIWELSQQEPTQLWERIY 597

Query: 544 YSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               + + ++  +        +      +V IMT+H AKGL+   VF+     +    + 
Sbjct: 598 PRWQELVAADRFQAVEMEDLHSRLVRSGQVTIMTMHRAKGLDWDAVFVPFLEERTLPGQS 657

Query: 603 I-----KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                 K +       D     +                K    +   E  RLLYV MTR
Sbjct: 658 WVAANAKFLSPEVDFIDVVRSQLRAYGHHQPLPNWQTASKKATAAKIAEEYRLLYVAMTR 717

Query: 658 ASDQLIICKHS 668
           A   L +    
Sbjct: 718 AKRLLWLAAAQ 728


>gi|282866614|ref|ZP_06275656.1| UvrD/REP helicase [Streptomyces sp. ACTE]
 gi|282558516|gb|EFB64076.1| UvrD/REP helicase [Streptomyces sp. ACTE]
          Length = 799

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 95/663 (14%), Positives = 187/663 (28%), Gaps = 163/663 (24%)

Query: 26  FQVSDINKYVSLSMETG--NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKN 83
               ++   +     TG    T    A    Q    + +      L    +         
Sbjct: 136 RAAGELRGRLRQLGATGVQARTFHSAALRQLQYFWPKAVGGELPRLVERKVQLVAEAAAR 195

Query: 84  IITQEINKKSPDLKEKLKKSQ-DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              +    +  D   +++ ++  + +         K  +           + + YE+ K+
Sbjct: 196 CGIRLDRNELRDATSEIEWAKVTQTVPADYPAAVAKTQRDAPRDPAELSQIYSAYEQLKR 255

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  V+DFED+++ T  +L+       I   + ++  H ++DE QD S +Q  ++     D
Sbjct: 256 ERSVIDFEDVLLLTVGILQD---RHDIADHVRRQYQHFVVDEYQDVSPLQQRLLDLWLGD 312

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        L  VGD  Q+IYSF GA P+ +L  +  + +         ++++L  
Sbjct: 313 ----------RDDLCVVGDASQTIYSFTGATPEHLLNFRTRHPQ--------ATVVKLVR 354

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            +RST  ++ + + + S           +   +   S R      V              
Sbjct: 355 DYRSTPQVVHLANGLLSQARGR-----AAEHRLELVSQREKGPEPV-------------- 395

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                          +       A   A  + ++I             + A +I VL R 
Sbjct: 396 -------------FTEYPDEPAEAEGTARRVRDLIAAG----------VPAGEIAVLYRV 432

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              + +          D  +           D   +++     R         +      
Sbjct: 433 NSQSEVYEQAL----ADAGVPYQLRGAERFFDRAEVREAGVALR--------GAARAGGN 480

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            PL      D               +        G    +   + +  L+ +A       
Sbjct: 481 DPLL-----DGADDLPAEVRAVLSTKGWTTTPPAGSGAVRDRWESLAALVRLA------- 528

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTI 561
                                                EQ    ++L +L++EL++     
Sbjct: 529 ----------------------------------EDFEQARPGATLSDLVAELDERAAAQ 554

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                     V + ++H+AKGLE    FLV     +                        
Sbjct: 555 HAPTVQG---VTLASLHSAKGLEWDAAFLVGMTEGMMP---------------------- 589

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                        +         EE  RLLYVG+TRA   L +      S   ++++R  
Sbjct: 590 -------------IAYAKTDEQVEEERRLLYVGVTRARFHLSLSWALARSPGGRASRRPT 636

Query: 682 YDM 684
             +
Sbjct: 637 RFL 639


>gi|210623662|ref|ZP_03293971.1| hypothetical protein CLOHIR_01921 [Clostridium hiranonis DSM 13275]
 gi|210153427|gb|EEA84433.1| hypothetical protein CLOHIR_01921 [Clostridium hiranonis DSM 13275]
          Length = 776

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 100/583 (17%), Positives = 188/583 (32%), Gaps = 83/583 (14%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            + +   +   Y +  K + +LDF+DL+IN + +++  D    +R K++++  +I  DE 
Sbjct: 232 IMVIVAPIYEMYCKRLKLHGLLDFDDLLINAHKIVRDDDA---VREKLNKKYKYIFEDEC 288

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD++ IQ ++I+ +  D             +  VGD  QSI    G   +   +  R   
Sbjct: 289 QDSNEIQGKIIKLIGGD----------NPNIVRVGDINQSI---SGTFSESNPKFFREF- 334

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                         + +S RS+ DIL + + +    +N+              +    ++
Sbjct: 335 -----IESADCCHRMYMSNRSSKDILELANLLVDYTKNSL------PEIECRDALEDMKI 383

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
            TV+  +      + +       W        +          I  TI         F  
Sbjct: 384 KTVEKGKGYKENPEPKSYTINTKWLGAGSFDEE----------IRETIR--------FVE 425

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
           G KR    K I +L    KD   I    +     + +               I D+  + 
Sbjct: 426 GIKRKYPDKSIGILAPYNKDCNKIAAELK----KHDLQFENLSSSSEKMRKVIDDIANIL 481

Query: 426 RFILSQEDDLSFVCMLKSPLF-------NFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            F +  ++    + ++ +               +IFK  T         E      +   
Sbjct: 482 DFTIDNDNIDKLMDVIGTAFIKEESEEGKADFLNIFKKFTTDELIYKFDELDLGIVDDSS 541

Query: 479 SKFQHVIKYIHELIHIAQFCSPH------------DFFTLILGAKKGRQQFISRFGNEVI 526
           S F      + ++  I  +                D     +   +    ++     E  
Sbjct: 542 SIFAKFKNALEKMREIIDYSWNRADLLVLFIRDRLDITEEEMAIAEYVAFYVKYLKREDK 601

Query: 527 DVLDE-FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           DV  E  +N       +S+  + ++   +  Y              V + T H +KG+E 
Sbjct: 602 DVDFEYIVNVIKDRGNSSFRHILDITGNINGY--------EPTPGSVTVCTNHKSKGMEW 653

Query: 586 PVVFLVDTGSQVFSHKHIKKMH----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIK-HLK 640
             VF++      F      K+      +     +P   +     K  N +        LK
Sbjct: 654 DCVFMLKCTKYQFPSDLEFKLPCQKYFLKEKYSNPEALVASEIEKLTNGLERTNFDVELK 713

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                E  RL YV +TRA + LII      S+E K  +  +  
Sbjct: 714 LDQIREKIRLFYVSVTRAKEMLIISAARFNSDEDKKKRNPFEQ 756


>gi|291447594|ref|ZP_06586984.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350541|gb|EFE77445.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 759

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 101/784 (12%), Positives = 209/784 (26%), Gaps = 171/784 (21%)

Query: 2   KNRFGLSLN-ESYELIYKDLWPLPYFQVSDINKYVSLSMETG--NPTILKKAQTLQQASQ 58
           +  +G+         +    +        ++   +     TG    T    A    Q   
Sbjct: 76  RIAYGVRAGILQPATVLAVTF--TNRAAGEMRGRLRQLGATGVQARTFHSAALRQLQYFW 133

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ-DEFIKIRDRFNTY 117
            + +      L    +            +    +  D+  +++ ++  + +         
Sbjct: 134 PKAVGGELPRLLERKVQLVAEAAARCELRLDRTELRDVTGEIEWAKVTQTVPADYAAAVA 193

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           K  +       +   + + YE+ K+   V+DFED+++    +L+       I   +  + 
Sbjct: 194 KAQRDAPRDPAVLSQIYSAYEQLKRDRSVIDFEDVLLLMVGILQD---RGDIADHVRGQY 250

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            H ++DE QD S +Q  ++     D             L  VGD  Q+IYSF GA P  +
Sbjct: 251 QHFVVDEYQDVSPLQQRLLDLWVGD----------RDNLCVVGDASQTIYSFTGATPDHL 300

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L  +              ++++L   +RST  ++ + + + S         + +   +  
Sbjct: 301 LNFRTR--------HPGATVVKLVRDYRSTPQVVHLANGLLSQAHG-----KAADHRLEL 347

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            S R      V                    +T Y D   +       A   A  I ++I
Sbjct: 348 VSQRDKGPEPV--------------------YTEYGDEPTE-------AESTARRIRDLI 380

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                        + A +I VL R    + +          D  +           +   
Sbjct: 381 AAG----------VPAGEIAVLYRVNSQSEVYEQAL----ADAGVPYQLRGAERFFERAE 426

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           +++     R                                +    +++ +  +  A+  
Sbjct: 427 VREAGTALRGAA-----------------------------RAGRNDSLLDGAEDLASQV 457

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            +           L        P      +    +                    +    
Sbjct: 458 RA----------VLSTKGWTTRPPAGSGSVRDRWESLAAL---------------VRLAE 492

Query: 538 RNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             E     ++L +L+ EL++               V + ++H AKGLE   VFLV     
Sbjct: 493 DFETAKPGATLTDLVRELDERAAAQHAPTVQG---VTLASLHAAKGLEWDAVFLVGLTEG 549

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +                                     +         EE  RLLYVG+T
Sbjct: 550 MMP-----------------------------------IAYAKTDEQVEEERRLLYVGIT 574

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA   L +    + S   ++++R    +     +                        + 
Sbjct: 575 RARVHLSLSWALSRSPGGRASRRPTRFL-----NGLRPGSTGSGARGGVGGGGGIDRGTG 629

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                      E   +     ++  +  +             PS +D      L    +D
Sbjct: 630 RAATAERTPAVERKPRSPVRCRVCGRTLTDAGEMKLMRCEECPSDMDEALYERLHDWRAD 689

Query: 777 NQTF 780
               
Sbjct: 690 QAAL 693


>gi|325522730|gb|EGD01227.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Burkholderia sp.
           TJI49]
          Length = 512

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/540 (13%), Positives = 139/540 (25%), Gaps = 132/540 (24%)

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS  +IL   +++ S   +  G +  +           G    V+++        
Sbjct: 2   LEQNYRSHGNILDAANQLISNNAHRLGKNLRTD---------AGHGEPVRVY-------- 44

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                             + S+ +  A  I   I ++I T           +   ++ VL
Sbjct: 45  ------------------EASTDAQEASWIVEEIRSLINTG----------LSRSEVAVL 76

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  I            I           +   +K  +A  R I +  DD +F  
Sbjct: 77  YRSNAQSRAIEHTL----MTSGIPYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFAR 132

Query: 440 MLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
           ++  P        I ++    R    ++   I        +        I ++    Q  
Sbjct: 133 VVNFPTRGIGARSIEQLADAARLYGCSMAAAIPYVTGKAGTSLGAFANLIAKMRAETQQM 192

Query: 499 SPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE-------- 549
           S  +    ++ A      +   R G + ++ L E +N            L          
Sbjct: 193 SLPETVEYVVRASGLADFYQGEREGQDRLENLQELVNAATAFVSEEGYGLDTPARSIPLR 252

Query: 550 --------------------------------------LISELEQYPPTI-KRAHSANHN 570
                                                 L   L             A  +
Sbjct: 253 AGAIAAPELGAAGDDASVEVLEPAPLDDPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQD 312

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V++MTVH AKGLE   VF+      +F H++                            
Sbjct: 313 AVQLMTVHAAKGLEFAAVFITGLEEGLFPHENSV-------------------------- 346

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                   L+    EE  RL+YV +TRA ++L +    +     ++          +   
Sbjct: 347 --------LESDGLEEERRLMYVAITRAKERLYLSFAQSRMLHGQTRYNVRSRFFDELPE 398

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
           +  +    K+                      P    E I        +P         D
Sbjct: 399 HVLKWLTPKVEAGSRWGGRSDNAGYGRDWFARPGGSREQIVDAAVSAPLPAFADKQRAAD 458


>gi|291006584|ref|ZP_06564557.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1052

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/510 (14%), Positives = 142/510 (27%), Gaps = 88/510 (17%)

Query: 6   GLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETGNPTI--------LKKAQ 51
           GL  ++      +         P      +  ++   L +E   P           + A+
Sbjct: 480 GLDPDQRAAASAEAGPLLIVAGPGTGKTRTVTHRIAHLVLERQVPARECLAITFTRRAAE 539

Query: 52  TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQD 105
            + +            L  + F +      ++   +        L +       L +   
Sbjct: 540 EMTERLHALAGPTAAELTVATFHSFGLQLLRDHHDKAGLSADFGLADASVQHEVLTEVAG 599

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
           +    +         +    +          Y  A ++  ++DF+DL++    LL+  D 
Sbjct: 600 DERAAKALRAELSRARRGGDTDEDTAAALHRYTTALRERNLIDFDDLVVLPVRLLESDD- 658

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +R         I +DE QD   +Q+ ++R L            +   L AVGD  Q+
Sbjct: 659 --ELRAAYRDRFRWITVDEYQDVDEMQYRLLRQLA----------PAGANLTAVGDPDQA 706

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IYSF GA+    LR ++   +          +++L  ++RS   IL    +         
Sbjct: 707 IYSFRGADVGFFLRFQQDWPQ--------APVVQLTRNYRSGRHILDGAVRAIR------ 752

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                                   L    V         Q+ +     D   +       
Sbjct: 753 ---------------------PGTLVPDRVLLPAGDRPAQRITVHEATDEHAE------- 784

Query: 346 ARRIAYTISNMIGTDTIFSNGKKR-------VIQAKDILVLVRKRKDTPLITFLTRFLKN 398
           A  +A +I  ++G  +  S    R        I   DI VL R    +  +         
Sbjct: 785 AAFVARSIDRLLGGASFHSLDSGRVDGDGHGGIGFADIAVLYRTDSQSRAVLDEL----V 840

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              + V       L+    +  LM     +       S    ++             +  
Sbjct: 841 RCGLPVQKRSHDPLSARPGVDHLMRELALV--PARKGSVPERVRWAADAVLAAMPDAVQE 898

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYI 488
           Q  E     E +   A       Q   + +
Sbjct: 899 QTAEIHAAAELLMPLAQRCGDDVQRFRREL 928



 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 65/258 (25%), Gaps = 39/258 (15%)

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH---VIKYIHELIHIA 495
             +           DI  +     ++  V + + +       +          +  L+   
Sbjct: 808  RVDGDGHGGIGFADIAVLYRTDSQSRAVLDELVRCGLPVQKRSHDPLSARPGVDHLMREL 867

Query: 496  QFCSPHD--FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                         +  A       +     E    +       +   Q     +Q    E
Sbjct: 868  ALVPARKGSVPERVRWAADAVLAAMPDAVQEQTAEIHAAAELLMPLAQRCGDDVQRFRRE 927

Query: 554  LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
            L         A     + + ++T+H AKGLE PVVF+V     +   +            
Sbjct: 928  LLLGAEVD--ALDPRADAISLLTLHAAKGLEFPVVFVVGCEDGLLPLRWPGATP------ 979

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                      +     E  RL +VGMTRA D L + + +  +  
Sbjct: 980  --------------------------ENDDIAEERRLFFVGMTRAQDHLHLTRAARRTRH 1013

Query: 674  KKSNQRTWYDMVYDSFHN 691
                       +     +
Sbjct: 1014 GTERDTRPSPFLEGLGED 1031


>gi|182436130|ref|YP_001823849.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776756|ref|ZP_08236021.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
 gi|178464646|dbj|BAG19166.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657089|gb|EGE41935.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
          Length = 738

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 91/615 (14%), Positives = 170/615 (27%), Gaps = 162/615 (26%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              K  +       +   + + YE+ K+   V+DFED+++ T  +L+       I   + 
Sbjct: 171 AVAKTQRDAPRDPAVLAQIYSTYEQLKRDRSVIDFEDVLLLTVGILQD---RNDIAEHVR 227

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +  H ++DE QD S +Q  ++     D             L  VGD  Q+IYSF GA P
Sbjct: 228 GQYQHFVVDEYQDVSPLQQRLLDLWVGD----------RDDLCVVGDASQTIYSFTGATP 277

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L  +              ++++L   +RST  ++ + + + S         + +   
Sbjct: 278 DHLLNFRTR--------HPGATVVKLVRDYRSTPQVVHLANGLLSQAHG-----KAADHR 324

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           +   S R      V                    +T Y D   +       A   A  I 
Sbjct: 325 LELVSQRDKGPEPV--------------------YTEYGDEPTE-------AESTARRIR 357

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           ++I             + A +I VL R    + +          D  +           +
Sbjct: 358 DLIAAG----------VPAGEIAVLYRVNSQSEVYEQAL----ADAGVPYQLRGAERFFE 403

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              +++     R                                +    +++ +  +  A
Sbjct: 404 RAEVREAGTALRGAA-----------------------------RAGRNDSLLDGAEDLA 434

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
           +   +           L        P      +    +                    + 
Sbjct: 435 SQVRA----------VLSTKGWTGRPPAGSGAVRDRWESLAAL---------------VR 469

Query: 535 FTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                E     ++L +L+ EL++               V + ++H AKGLE   VFLV  
Sbjct: 470 LAEDFEAAKPGATLTDLVRELDERAAAQHAPTVQG---VTLASLHAAKGLEWDAVFLVGL 526

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +                                     +         EE  RLLYV
Sbjct: 527 TEGMMP-----------------------------------IAYAKTDEQVEEERRLLYV 551

Query: 654 GMTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           G+TRA   L +      +           + + +            +     I++    A
Sbjct: 552 GITRARIHLSLSWALSRSPGGRANRRPTRFLNGLRPGSTGAGTRGGVGGGGGIDRGAGRA 611

Query: 712 YEWSTHHPENTPLER 726
               T   E  P   
Sbjct: 612 AVGRTPAVERRPRSP 626


>gi|311111760|ref|YP_003982982.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
 gi|310943254|gb|ADP39548.1| ATP-dependent DNA helicase [Rothia dentocariosa ATCC 17931]
          Length = 648

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/539 (15%), Positives = 158/539 (29%), Gaps = 148/539 (27%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YE+ K +  ++DFED+++ T  +++  D    +   I ++  H ++DE QD S +
Sbjct: 225 RLFRAYEDLKDERNLIDFEDVLLLTVGIIEDDDA---LAATIREQYRHFVVDEYQDVSPL 281

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++ +   +             L  VGD  Q+IYSF GA  + +L   R  +      
Sbjct: 282 QQRLLDAWLGE----------RDDLCVVGDASQTIYSFTGATSRHLLEFPRRYR------ 325

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + L   +RS + ++ + +++ +        +E S                   W
Sbjct: 326 --GAHTVRLTRDYRSHSQVVELANRLLAARRPRPDSTEFS-------------------W 364

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              +     +    +  W  Y D   +       A  IA  I +++  D          +
Sbjct: 365 APPLKLVSQRGPGVESQWFGYTDDERE-------AEGIAEQIQDLLEKD---------GV 408

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A +I VL R    +     L      D  I           D   +K  M   R     
Sbjct: 409 PASEIAVLFRTNGQSG----LLEAALADRGIPYQLRGAEQFFDRPEVKQAMLALRASAKS 464

Query: 432 ED-DLSFVCMLKSPL--FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            D   +    ++  L    ++E         R + E++   +    +   ++ + + +  
Sbjct: 465 TDGSENVPRYVREVLEPLGYTEKAPQSAGAVRQKWESLAAIVSMVDHLEATRIEDIAQAE 524

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
                +    + HD    +                                         
Sbjct: 525 AAGAPVPHRLTVHDVVATLAHRL------------------------------------- 547

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                            +     V + ++H+AKGLE   VFL      +           
Sbjct: 548 -------------ATQDAPVMEGVTLASLHSAKGLEWDAVFLCGLNEGLMP--------- 585

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                     +         +E  RLLYVG+TRA   L     
Sbjct: 586 --------------------------ITFAQTSDEIDEERRLLYVGITRARKYLWFTWS 618


>gi|159030183|emb|CAO91075.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 766

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 87/636 (13%), Positives = 179/636 (28%), Gaps = 77/636 (12%)

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK-EKLKKSQDEFIKIRDRFNTY 117
                    LL       + T +    +    +  P L    + + +   +  +  +   
Sbjct: 147 IADPIRYQKLLEGVEFDGEETERLRRQSVLRTEILPSLAYAAIHELKSSGLSPQQVWELS 206

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                    L +A  L   YE   ++   +D++D+I+    +L++      IR +  + +
Sbjct: 207 HYTDDNYQILAMASGLYQQYEILMRQKNYIDYDDMILGALRVLEEE----KIRRQWQKSV 262

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKR 236
             +  DE QD+S +Q ++I  L ++             L  VGD  Q+I S F  A+P  
Sbjct: 263 FGVFEDEAQDSSPLQEKLITILAKN------NDEEIPNLIRVGDPNQAINSTFTPADPVY 316

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                        +   + ++  +  + RS   I+   + V    +            + 
Sbjct: 317 FNWFC-------ESCQNEGNLSTMNQAGRSNTKIIEAANLVLQWVD-RDWKQGKDNHKVT 368

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
               R+       +              + +        + Q          I   +  +
Sbjct: 369 EAPFRVQA-----ILPVGAEDPQPNPVKEGKGL-----EIYQPDDIYQTVELIEKRLVKL 418

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +  +   +             +LVR+ +               Y+I +   +       +
Sbjct: 419 LQENPQHNA-----------AILVRENRQGHFFAQKFAHFYKSYQIRIFEANEIDRFSQI 467

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKS-PLFN-FSEDDIFKICTQRHETETVYEYIQKFA 474
             + L  L  F+            L+   L    +  D+  + T   +   +Y       
Sbjct: 468 PAEILK-LLAFVERPHSPDYLKAALEVLQLRGLITAQDLNPLVTYPEQ--FLYPTPLDPE 524

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                K     +Y   L+        +   +      +     ++             L 
Sbjct: 525 LKSNEKIAR--RYCCSLLKARLELPHYQLLSFFAMTLQYSGSELATLQK---------LT 573

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE--------VRIMTVHTAKGLESP 586
             +  E    SSL+  I+ L +   + +       N+        + I+T+H AKGL+  
Sbjct: 574 ARIYQETAGNSSLKNTINTLNEIIASERFEGVEEDNDDCYTRPGQLTIITMHKAKGLDWD 633

Query: 587 VVFLVDTGSQVFS------------HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            VF+      +                          +          P S         
Sbjct: 634 YVFIPFLHEDIIPGKPWVPNGAKFLGDFSLAEVARAQIRAAVHQRYLNPDSIPIIPPPLS 693

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                 +  + E  RLLYV MTRA   L +      
Sbjct: 694 AWLEAGQLKKAEEYRLLYVAMTRAKRLLWMSSEKKA 729


>gi|309790706|ref|ZP_07685256.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
 gi|308227237|gb|EFO80915.1| UvrD/REP helicase [Oscillochloris trichoides DG6]
          Length = 829

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 105/675 (15%), Positives = 195/675 (28%), Gaps = 136/675 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L   YEE + +   + F+D+++   ++L +    A +R    Q  + +L+DE QD SL
Sbjct: 185 RDLYRFYEELRHERGWITFDDMLLLGWEVLVRH---ADLRQHWQQSYDAVLVDEFQDVSL 241

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q E++  L              R + A+GD+ Q+IY F GA+        +        
Sbjct: 242 AQAEMLDLLVAQ----------HRNVMAIGDDDQTIYGFRGAQMAFFRGFAQRY------ 285

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                 I E+  +FR     + + ++V +        +  +           G  G  QL
Sbjct: 286 ---NAKIYEMTDNFRCRVGHVILANRVIAQNRERHPKTLVAAR---------GCGGQTQL 333

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                             +ARR+  T++                
Sbjct: 334 HTAPTD--------------------------VAMARRLVDTVAAAHAAG---------- 357

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                I VLVR    TPLI            I               I DL+A       
Sbjct: 358 YSYAQIAVLVRLNAHTPLIEQAL----ITAHIPYHMAADEPFFRRREIADLLAYADLAAY 413

Query: 431 QED---------------DLSFVCMLKSPLFNFSED-DIFKICTQRHETETVYEYIQKFA 474
            +                 L +  +   P    +       +    H+ + +   +   A
Sbjct: 414 NQRLLLRQPLSSEQAERLTLGWRRLYNRPKRYLNRQLAQECLTAALHQQQPLSTTLPTLA 473

Query: 475 NCGISKFQHVIKYIHELI----HIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEVIDVL 529
           +   S+  H +  + +L+             D    +      +    ++ G  E     
Sbjct: 474 DRVSSRVAHAMHDLADLLLWLGEAQSTLPAADLLAELDARLGYQDFLATQSGFPETGAGY 533

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
              +   +   Q    SL +  + L Q     +       + V + T+H AKGLE PVV 
Sbjct: 534 AANVEACITYAQGKG-SLAQFRAHLAQLETE-RTQLDPQADAVDLRTIHRAKGLEWPVVL 591

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L    +     +                                           EE  R
Sbjct: 592 LPFCNAGHMPFRG--------------------------------------AEDLEEERR 613

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD--MVYDSFHNDERVKKIKLTNSINKD 707
           + YV +TRA ++L +    +   E     R      ++  +      +++   T S  + 
Sbjct: 614 IFYVALTRAREELHLYAVEDRQIELSPFLRDVGATVLLRQAEQFAALLERDPRTWSAAET 673

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQK--IPKKLFSPIKNDINEPYILNPSTIDTK 765
             +A     +  E       +   +L  +    +   L         +   L+P+  D  
Sbjct: 674 LNVATFPREYGQERLLRHWWQVPPELRRQVAGRVVALLQQLADAQATQRLGLHPADQDLW 733

Query: 766 GKTNLESLLSDNQTF 780
            +         +  F
Sbjct: 734 AELAGSDAALPDAPF 748


>gi|78776939|ref|YP_393254.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
 gi|78497479|gb|ABB44019.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
          Length = 692

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 87/599 (14%), Positives = 179/599 (29%), Gaps = 96/599 (16%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   +   +E  K++   ++F DL++N  ++ K +++              +L+DE QDT
Sbjct: 170 IYADIVDEFEALKREYGFVNFNDLLLNFREMCKTKEL----------GYKEVLVDEYQDT 219

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q  +I ++            +P +LF VGD  QSIY+F+GA+   +           
Sbjct: 220 NALQGTLIDAM------------NPPSLFCVGDYDQSIYAFNGADISIIGSFSTKFP--- 264

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +  L  ++RST  IL++  KV    E       + T        R+      
Sbjct: 265 -----SAKVHTLTKNYRSTVPILSLATKVIEHNERIYPKKLEVTRVHDSHPPRL------ 313

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM-----IGTDTIF 363
            L    +         +  +  +  D +      +  A  I   +  +         T F
Sbjct: 314 -LAYDELFDQYHDIAFKISNTQTPRDEIAVIFRNNSSADGIEVGLRELGITCKRKGGTSF 372

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI-KDLM 422
            + ++         +L+ +      I            ++        +  H ++   L 
Sbjct: 373 FDSREVKAVLDFYTLLINESDMMAFIHLFEFARGVGSAVAKELYLALKMLGHGSVFYGLY 432

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF- 481
           A    I +  +       L        +D +      +       +   +       K  
Sbjct: 433 APDESISNPFEKRKLNQQL-----GLFDDFLELGSVGKFAKCGFEDKFMRNPILKHPKLT 487

Query: 482 -------QHVIKYIHEL------IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
                          +L        I    +  + +  I      R+  +     +    
Sbjct: 488 KENATFLHDFYLLYRDLKGVREPRVIVAKIAKSEIYKYIAEYLSNRRALLKDGTIDEKQK 547

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            D   N   +       S      E       +  +       V +++VH +KGLE   V
Sbjct: 548 ADSLSNIARKMVLLEELSKPYSEHERFLNAMILGSSDLTQGEGVNLLSVHASKGLEYKEV 607

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           ++VD     F ++                                      +  + +E  
Sbjct: 608 YIVDLMDGRFPNR----------------------------------KLMQRGGSLDEER 633

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           RL YV +TRA D L +        +K +   + +         DE  +++ L     ++
Sbjct: 634 RLFYVAVTRAKDILYLSYAKYDKIKKLNFVPSQFLYEASLVPKDEAYREMVLKEESKEE 692


>gi|134100194|ref|YP_001105855.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133912817|emb|CAM02930.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1044

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/510 (14%), Positives = 142/510 (27%), Gaps = 88/510 (17%)

Query: 6   GLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETGNPTI--------LKKAQ 51
           GL  ++      +         P      +  ++   L +E   P           + A+
Sbjct: 472 GLDPDQRAAASAEAGPLLIVAGPGTGKTRTVTHRIAHLVLERQVPARECLAITFTRRAAE 531

Query: 52  TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK------LKKSQD 105
            + +            L  + F +      ++   +        L +       L +   
Sbjct: 532 EMTERLHALAGPTAAELTVATFHSFGLQLLRDHHDKAGLSADFGLADASVQHEVLTEVAG 591

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
           +    +         +    +          Y  A ++  ++DF+DL++    LL+  D 
Sbjct: 592 DERAAKALRAELSRARRGGDTDEDTAAALHRYTTALRERNLIDFDDLVVLPVRLLESDD- 650

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +R         I +DE QD   +Q+ ++R L            +   L AVGD  Q+
Sbjct: 651 --ELRAAYRDRFRWITVDEYQDVDEMQYRLLRQLA----------PAGANLTAVGDPDQA 698

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IYSF GA+    LR ++   +          +++L  ++RS   IL    +         
Sbjct: 699 IYSFRGADVGFFLRFQQDWPQ--------APVVQLTRNYRSGRHILDGAVRAIR------ 744

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                                   L    V         Q+ +     D   +       
Sbjct: 745 ---------------------PGTLVPDRVLLPAGDRPAQRITVHEATDEHAE------- 776

Query: 346 ARRIAYTISNMIGTDTIFSNGKKR-------VIQAKDILVLVRKRKDTPLITFLTRFLKN 398
           A  +A +I  ++G  +  S    R        I   DI VL R    +  +         
Sbjct: 777 AAFVARSIDRLLGGASFHSLDSGRVDGDGHGGIGFADIAVLYRTDSQSRAVLDEL----V 832

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              + V       L+    +  LM     +       S    ++             +  
Sbjct: 833 RCGLPVQKRSHDPLSARPGVDHLMRELALV--PARKGSVPERVRWAADAVLAAMPDAVQE 890

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYI 488
           Q  E     E +   A       Q   + +
Sbjct: 891 QTAEIHAAAELLMPLAQRCGDDVQRFRREL 920



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 51/187 (27%), Gaps = 34/187 (18%)

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              +  A       +     E    +       +   Q     +Q    EL         A
Sbjct: 871  ERVRWAADAVLAAMPDAVQEQTAEIHAAAELLMPLAQRCGDDVQRFRRELLLGAEVD--A 928

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 + + ++T+H AKGLE PVVF+V     +   +                       
Sbjct: 929  LDPRADAISLLTLHAAKGLEFPVVFVVGCEDGLLPLRWPGATP----------------- 971

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                           +     E  RL +VGMTRA D L + + +  +             
Sbjct: 972  ---------------ENDDIAEERRLFFVGMTRAQDHLHLTRAARRTRHGTERDTRPSPF 1016

Query: 685  VYDSFHN 691
            +     +
Sbjct: 1017 LEGLGED 1023


>gi|315303636|ref|ZP_07874171.1| ATP-dependent DNA helicase PcrA [Listeria ivanovii FSL F6-596]
 gi|313627999|gb|EFR96597.1| ATP-dependent DNA helicase PcrA [Listeria ivanovii FSL F6-596]
          Length = 416

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 117/369 (31%), Gaps = 59/369 (15%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               A  +   I   +           R +   D  +L R    + ++            
Sbjct: 12  EKEEAAYVVMKIQEEVNN-------SNRPL--SDFAILYRTNAQSRVMEEYF----MKSN 58

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QR 460
           ++          D   IKD++A  R I + EDD+S   ++  P        + K+     
Sbjct: 59  MAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIINVPKRGVGPGTLEKLNNVAA 118

Query: 461 HETETVYEYIQKFA-----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
               +++E + +                    +     +  F S  +    IL     R 
Sbjct: 119 AYDLSLFEVLNRIELAGISAKISKDLVAFHDLVRGFTQMQDFLSVTELVEEILEKTGYRA 178

Query: 516 QFISRFGNEVI---DVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIK--RAHSANH 569
              +    E     + +DEFL+ T   E+ +   SL   +++L       K    +   +
Sbjct: 179 MLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKSLLAFLTDLALVADVDKLEEDNEEQN 238

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             V +MT+H+AKGLE PVVFLV     +F H                             
Sbjct: 239 GAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHS---------------------------- 270

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                     ++   EE  RL YVG+TRA ++L +    +     + +       + +  
Sbjct: 271 ------RAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSNQESRFIGEIP 324

Query: 690 HNDERVKKI 698
            +   +   
Sbjct: 325 RDLLELANE 333


>gi|188583340|ref|YP_001926785.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179346838|gb|ACB82250.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 1143

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 103/738 (13%), Positives = 204/738 (27%), Gaps = 115/738 (15%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT---LQQAS 57
           L +R  LS  E+   ++   +      V  I ++      + +P ++ K      L+   
Sbjct: 254 LMDRLALSRPEAAASVWTGTFHAFGLDV--IRRFHERLGRSASPKLVDKPTAITMLEGVL 311

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK--EKLKKSQDEFIKIRDRFN 115
            +  +     L       Q  +   + I++  ++    ++  E     Q        R  
Sbjct: 312 ASLPLAHYRDLWDPV---QDLSNILSAISRAKDELVDHVRYRELADAMQRAATDDATRLR 368

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
             +  +           +   YE    +   LDF DL++    L  +      +   +  
Sbjct: 369 AARAHEE--------AIVYEAYERLLSEADALDFGDLVMRPVRLAAEHPD---VAKALSL 417

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
              H+L+DE QD +L    +IR+L  D             L+ VGD +QSIY F GA   
Sbjct: 418 RHRHLLVDEYQDVNLATVRLIRALAAD---------EGERLWVVGDARQSIYRFRGATSA 468

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +   +              ++  L +++RS  +I+       +  +  + L       +
Sbjct: 469 SMAAFRAHYP--------GATLGALDVNYRSRKEIIDTFTSFAASVDAFRPLGA-----L 515

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                R        L +      +                                    
Sbjct: 516 GLAPDRGASGLKPVLHDAGTPDDEVALVA------------------------------- 544

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                   +  K   +  ++  VL                      + V+      L + 
Sbjct: 545 -----ASAAQAKAAGVDYREQAVLCTTNDRLAEFAAGLIA----RDVPVLYLG--PLFER 593

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
             +K+L+ L           + V +   P F     D+  +     +           A+
Sbjct: 594 PEVKELLCLLALFHDPR-AATLVRVATMPGFEMELGDVAAVAAHLRDASGPPLDWLAAAD 652

Query: 476 CGISKFQHVIKYIHELIH----IAQFCSPHDFF-TLILGAKKGRQQFISRFG---NEVID 527
                       +  L       A    P      L+L      ++  +           
Sbjct: 653 AIPGLGPSATAPLRRLREVCGGFADRTPPWRIASALVLDRLGIGRRIAASGTLPERMAGI 712

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISEL-------EQYPPTIKRAHSANHNEVRIMTVHTA 580
            + +FLNF             E +  +       E+         +   + VRIMT+H  
Sbjct: 713 AIWQFLNFLRSLPVEGQFPTFEALRRIKRLVVLGEEKSLRHVPDAALELDAVRIMTIHAC 772

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE  +V                     P    +    +  PQ+    +          
Sbjct: 773 KGLEFQLVHAPGMIKTGLPRTAKPPPCPPPDALIEGSDGLTGPQACLTGH---------- 822

Query: 641 KSTQEEYNRLLYVGMTRASDQLIIC-KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
              +E+   L +V ++RA D L +          KK N   +   +  +      + ++ 
Sbjct: 823 ---EEQEACLFFVLLSRARDDLRLYRSTMMAGGTKKRNPSDYNARIAATLGRPPALVRLP 879

Query: 700 LTNSINKDEWIAYEWSTH 717
                +    +   W T 
Sbjct: 880 SPPPPSGPAAVPITWETP 897


>gi|189467388|ref|ZP_03016173.1| hypothetical protein BACINT_03776 [Bacteroides intestinalis DSM
           17393]
 gi|189435652|gb|EDV04637.1| hypothetical protein BACINT_03776 [Bacteroides intestinalis DSM
           17393]
          Length = 615

 Score =  160 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 92/540 (17%), Positives = 166/540 (30%), Gaps = 117/540 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y +       +DF+DL+  T  L      +A +     +   +I IDE QD +  Q
Sbjct: 175 LYYSYRDLMASLNAIDFDDLLFLTYKLFVNSPKTAAL---YRRNFEYICIDEAQDLNKAQ 231

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + V+++LT          S  + +  VGD KQSIY F+G+        +           
Sbjct: 232 YMVLKALTG---------SEHKNIMMVGDPKQSIYGFNGSSSSF---MQDSFVADY---- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              +IIEL  +FRS+  IL++ +K+ + P +   ++ +               G  ++  
Sbjct: 276 -APTIIELNDNFRSSRSILSLANKIVNAPSDLNNVAVN---------------GVCEIHS 319

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                 +                          A  IA  I   +  + +        + 
Sbjct: 320 FKDVCEE--------------------------ADWIASKIKEYLQNEHLKDIEG--KLT 351

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              I +L R R     I         +       N   +L D  + K      +  ++ +
Sbjct: 352 ENRITILARNRYLLLPIEEKLIE--ENINYFYKNNSNGLLFDSTSGKIFNLALQIKVNPK 409

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           D L F  +L   L N  +D ++            +Y+ I            +  K I  L
Sbjct: 410 DYLHFEQLLA--LLNIEDDKVYSFNELGNRIQNKLYKDIVNSIVLLKDSGDNFNKMIDHL 467

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
           +   Q  S  +                +       D+L+   N+          ++    
Sbjct: 468 LQKIQENSDFNMIDE------------NELHLAYNDLLEIKKNWHNYAISTKTKNIASFR 515

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           + +        +        + + T+HT KG E+ +VFL+    Q F      +   +  
Sbjct: 516 NAIALGKTIQSKKEIG----IALSTIHTMKGQENDIVFLIGMDDQTFPDYRALQKGGL-- 569

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                            E+    LYV +TRA   L I    +  
Sbjct: 570 -------------------------------ELEQEKNNLYVAITRAKRYLFITYPLSRK 598


>gi|319442810|ref|ZP_07991966.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile DSM
            44702]
          Length = 1151

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 127/1014 (12%), Positives = 256/1014 (25%), Gaps = 148/1014 (14%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNP--TILKKAQTLQQASQTQCIE-- 63
            +  +    +   L  L            +    TG P  ++   A  L +A      E  
Sbjct: 130  AATDLRGRLTDLLCDLAGDVDGTAAADATGYAATGTPVRSVHSWAFALLRAVAQLREEPL 189

Query: 64   ------ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF--- 114
                      LL    L            + I    P L    ++ +D  ++  +R    
Sbjct: 190  PRLMTGADHDLLIRSLLQGNAVDGTGSWPERIRPALP-LVGFARQLRDLLLRAEERGIGP 248

Query: 115  --NTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIR 170
                    +  L     A           K +    L+  +L+    D L+       I 
Sbjct: 249  DALADLGREHDLDMWVGAGDFLRESRRVVKLSGSHALNVSELLHRVLDELENTPEGRRIL 308

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +    +  +L+D+  +        +  LT          +    +   GD  Q ++ F 
Sbjct: 309  DRQRDTVKLLLVDDAHNLDPASARFLEMLT----------TPGARVLVAGDSDQCVFHFR 358

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+   +                    I L  S+R  A  +T V+++  +   ++     
Sbjct: 359  GADEDYLTGLAED----------ADHRIVLSRSYRLGAAAVTAVNRLGRLLPPSRTRVPV 408

Query: 291  STTTIRHRSSRIGQVGTV-----QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              T     ++       V      L  +      S+     ++      +   +     +
Sbjct: 409  RATEAATEAATEAGTEDVAGPAPDLVIRRAPSVTSERLSVADAVRRAHVTDGVDWDRIAV 468

Query: 346  ARRIAYTI----SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
              R A  I      ++            V+ A+  LV         L+  LT        
Sbjct: 469  VVRTAGEIHPLRRTLLSHGVPVKVDPTSVVLAEQPLVSSLLLALDALVRPLTVAELQQLV 528

Query: 402  ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK---ICT 458
             S VG                                  L   L       +     + T
Sbjct: 529  ESPVGG---------------------ADPVMLRRMERSLAPVLVGTGLRAMEAVGLMVT 567

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQF 517
             R + +    + ++F    +     V   I     +A+   S       +  A     + 
Sbjct: 568  GRADEQETEAWRRRFGPRELGLLDQVRAVIEAGQVVAEDGGSVEAVLWAVWQATGLSTRL 627

Query: 518  ISR------FGNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH-- 565
             +R       G++    LD      +      E+    +L+  +  +             
Sbjct: 628  QTRALRGGTLGSQADRDLDAVMSLFDLAGDLVERTPAITLETFLDGVRAQELPTGARDRR 687

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                + V I+  H A G E  VV +       +                D          
Sbjct: 688  GVRPDAVEILPAHAAAGREWEVVIVSGVQEDSWPAGPTVGGLFGQQELVDL--------- 738

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN-------- 677
                 I    I     S   E  RL  + ++RAS   ++    +  +E            
Sbjct: 739  -LDRGIEPTTIVSRASSALAEERRLFLLAVSRASRYTLVTAVESAGDEASVPSRFLDDIT 797

Query: 678  -------------------------QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
                                       +   ++       E    +   +    +   A 
Sbjct: 798  GGEEATAVENADPESEPRPHPVDTVADSLPRVLAMEPLVAELRDAVCDPDRPGHERRAAA 857

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
            E      E      +                 +  + D      ++P+T++  G+T   +
Sbjct: 858  ENLATLAEAGVYGADPAEWWGTAGPSSTGPAVAHRRGDSEPTLRISPTTLENLGRTTGPA 917

Query: 773  -----------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                            +    G +IH L +        +    I           PA   
Sbjct: 918  CDLASFLDSLRSTPTTEPMKVGTLIHALAEGFADGLTPEDAADIVREVVPWLVDGPAWTA 977

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK------DIIISGRIDQISISQ 875
            + L       ++           +   V V  K+            +I++GR D++  + 
Sbjct: 978  RPLTEGCLDAVDRLHGWLTQRAGNGRTVEVEKKLEHMIGHTDTGLPVILAGRTDRLETTA 1037

Query: 876  QNI-FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
                 + ++KT  +     E        QLS Y+ ++      ++   +L+Y  
Sbjct: 1038 DGASTVIDFKTGKNAKTVKEAAGS---PQLSAYQLLVSLEDGRRADGAMLVYPR 1088


>gi|300741871|ref|ZP_07071892.1| UvrD/REP helicase [Rothia dentocariosa M567]
 gi|300381056|gb|EFJ77618.1| UvrD/REP helicase [Rothia dentocariosa M567]
          Length = 1444

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 98/776 (12%), Positives = 210/776 (27%), Gaps = 106/776 (13%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
           R G+  +          W L    V   +  +                     + +    
Sbjct: 156 RLGVEQDAQMLG-DAQAWQLAAQIVQYWDGDLPA-------------------ASSASGV 195

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              S +    L       +++++    ++  +       + +         N  K+ +  
Sbjct: 196 ASKSTIVQSLLQLSGECAEHLVSP---QQVIEFCSAHLAAYESLSSPGPSANAKKVIERL 252

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A + LAK L   Y   K +  VLD+ DLI     + ++   +A +     +    +L+D
Sbjct: 253 KAKIILAK-LVQRYARVKARMQVLDYGDLIALAARIAREVPTAAQL---ERERYKVVLLD 308

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHS-SPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           E QDTS  Q  +   L                 + AVGD KQSIY F GA   ++    +
Sbjct: 309 EFQDTSHAQLRLFADLYGARDGHDGHPGQPEHPVMAVGDPKQSIYGFRGASDGQLFSFYQ 368

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
               R        + + L +++R+   IL   + +                 +++    +
Sbjct: 369 YFPTR------DETPLYLTVAWRNDVAILDAANLI--------------AAKLKNIPDWV 408

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  + +          +            L +  S +  A+ IA  I         
Sbjct: 409 RAPAPPHVPDLRPRSVILNPDEPGYRAMLGSVQLARYGSETEEAQGIAERIVQERARYAD 468

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                    Q   + VL R R          R       + V       L +   I D++
Sbjct: 469 T------PAQMPTMAVLTRTRAQM----EPIRQACESLGVPVQVVGLGGLLERPEIIDMV 518

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH------------------ETE 464
           ++ R +       + + +L    +     D+  +    +                    E
Sbjct: 519 SMLRVLADPNRSDALMRLLAGARWRLGTADLLALGDWSNYLTTTREKNMGRTFGEQSSEE 578

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELI-----HIAQFCSPHDFFTLILGAKKG------ 513
           T  +          +  +   +            +A++ S  +    +  A +       
Sbjct: 579 TSGDVPSSPQTDTDASLRAAHEEFERARKNAVEDLAEYGSLIEAIEHLPTADEAGNPIYP 638

Query: 514 --RQQFISRFGNEVIDVLDEF---LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
               +   R   E +  L  F   + +  +       +L   I  +      +      +
Sbjct: 639 ADYPESRRRLSVEGLRRLHAFTAEVEYLRQFTTEDIGTLLYEIERVMLLDIELAARPGGD 698

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
               R      A       V      S    +  +        +++D         S + 
Sbjct: 699 AYGSR------AHLDAFHEVAASYAASSPRINAMLYAGADGTEVDEDAPTARRFVLSANG 752

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            + +   +  L+++   E       G+T A ++         +          +  +   
Sbjct: 753 ISYLLGFLSWLEQAQNHER------GLTPAEEEPRRDAVQILTMHASKGLEWDHVYLPRM 806

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                               W       + P    LER E +  L + +++  +L 
Sbjct: 807 CDKYPTRPHTWHRLEYGSLPWPLRGDRDYLPS--ALERAEEVSALENYKELNARLE 860



 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 79/291 (27%), Gaps = 43/291 (14%)

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
               S +  + +    D++        RV++  L  +         +  T   +    + +
Sbjct: 1141 RWASEKDLAERTENRDIIAVPGQRRARVERAALNVARGSLSLDDLDKLTSPTDEEAQQIQ 1200

Query: 728  ETIKQLMDEQKIPKKLFSPIKNDINE------PYILNPSTIDTKGKTNLESLLSDNQTFN 781
            +   ++     + ++  +P      E         L+        +      +  +    
Sbjct: 1201 DWEHEVDLLLALAQRAVTPAVPAKPEHMSASTLIALSEDKETVLSRLVRPVPMQPSAAAR 1260

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK---NLLLSITRLLENPMMT 838
            +G++ H  ++  F                   +L+   +     +L       LE+   +
Sbjct: 1261 QGILFHAWVEEYFGDEP---------MLDIQDELYSDDDLDGSFDLDKLRATFLESEWAS 1311

Query: 839  TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-------------SQQNIFIFEYKT 885
              +     +E  V   +      + I GRID +                Q++  + ++KT
Sbjct: 1312 RTI---WRAEYPVETHVA----GVNIRGRIDAVFRRTEQITNADGTLQEQEHWDLVDWKT 1364

Query: 886  HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFI 934
                             QL++Y              +     YV   +   
Sbjct: 1365 GRKPSAHAMRHK---RIQLALYRLAFAKIQGIDPERVHAAFYYVGSDQTVW 1412


>gi|197301471|ref|ZP_03166550.1| hypothetical protein RUMLAC_00202 [Ruminococcus lactaris ATCC
           29176]
 gi|197299431|gb|EDY33952.1| hypothetical protein RUMLAC_00202 [Ruminococcus lactaris ATCC
           29176]
          Length = 758

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 115/737 (15%), Positives = 224/737 (30%), Gaps = 150/737 (20%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST- 123
              +L      +K   +K+  T     +  DL   L       IK ++R       +   
Sbjct: 105 ALWMLREKLEVEKAGWRKDF-TVMAPDEEEDLALTLTAEYGLKIKYKNRLKKRLEQEYQW 163

Query: 124 ----LASLTLAKYLNAHY---EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                        L   Y   E  KKK   + F DL+  +  LLK++D            
Sbjct: 164 YLEGRPIPRYKDDLFKLYPIIESEKKKQNKMTFSDLLRVSTLLLKEQDAFIP-------- 215

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
              I++DEVQD+  +Q E + +L                LFAVGD  Q IYS+ G     
Sbjct: 216 -KWIIVDEVQDSDKMQMEFLEAL----------KGRETKLFAVGDPNQVIYSWRGTGENM 264

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
               K   +              LP+++RS A IL   +                     
Sbjct: 265 FFLLKHRFE---------AKEYSLPVNYRSNALILGAANHFLQFGSQ------------- 302

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                            + +  +     +  ++   F            A  +   I  +
Sbjct: 303 -----------------IRASREKGEKIKIVNYYDPF----------QEAEELELRIREL 335

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                         +  +++ V  R ++       +   +     I    + +  L D  
Sbjct: 336 KEQG----------LTYREMAVFYRLQRQV----DVLAKVFERQGIPYEVSVKKSLHDIP 381

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETET---VYEYIQK 472
            +   + + RF ++  D+ S +  +    F  F           + +  +   +YE +  
Sbjct: 382 VLNWFVRVLRFCVNPLDEQSGIAAVADKEFGEFGMTRKKAEKIIKEKKLSESLLYEQMTG 441

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFF--------TLILGAKKGRQQFISRFGN- 523
           F    +  F   +K   +   I ++    +F           +   K   +Q  S  G+ 
Sbjct: 442 FQAWVVDNFGKFMKEGEKEQKIFEYFHLKEFLRPTVESYTENVKKIKSFLKQLCSYCGSI 501

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           +    L EFLN +        +  +E+ +E+               + V++MT+H +KGL
Sbjct: 502 DFRGHLREFLNSSELYGLKMEAGEKEVGAEM---------NPEDRKDAVQLMTLHASKGL 552

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   VFL+     +                                              
Sbjct: 553 EFDTVFLIGVNPGLIPLHSKNY------------------------------------EQ 576

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY-DMVYDSFHNDERVKKIKLTN 702
           +EE  RL +VG+TRA ++L +  ++N      + + + Y  M+          +K +  N
Sbjct: 577 EEEERRLFFVGITRAKNRLELSWYTNPGEPGIAGEESRYLKMIPQELLEGMPDEKERWAN 636

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                + +  +      E    + +E +++   E+   K      + +  E        +
Sbjct: 637 LQQLKKEVQEKAQEKVQEKAQEKAQEKVQEKAQEKVQEKAQKEVQEKEQKELRTELRQEV 696

Query: 763 DTKGKTNLESLLSDNQT 779
             + +     + +  Q 
Sbjct: 697 KLEDQQEQADMRAGIQA 713


>gi|302869734|ref|YP_003838371.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302572593|gb|ADL48795.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 707

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/662 (13%), Positives = 179/662 (27%), Gaps = 167/662 (25%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQ---ASQTQCIEERFSLLSSFFLTQKFTPQ 81
               +++   + +    G       A  L+Q    +           L    +       
Sbjct: 68  ARAAAEMRSRLGVLGVQGVQARTFHAAALRQVRYFAPRLLAGRAMPELLDSKVRVVTLAA 127

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEF-IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
             +  +     + DL  +++ ++              K  + T         +   YE  
Sbjct: 128 AKVGLRADRAAARDLSAEIEWAKSSLVEPGEYVVAAAKALRETPYEPARVADVFDAYERL 187

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           K+ N V+DFED++      +++      +  ++  +  H ++DE QD + +Q  ++ +  
Sbjct: 188 KRGNGVIDFEDMLRAAVWGIEEHPD---VAEQVRNQYRHFVVDEYQDVNPLQQRLLEAWL 244

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                          L  VGD  Q+IYSF GA    ++   R+         +  +++ L
Sbjct: 245 G----------GRDDLTVVGDASQTIYSFTGATSSYLVDFPRL--------HRGATVVRL 286

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              +RST  ++ + + V S                            ++L  Q     + 
Sbjct: 287 VRDYRSTPQVVGLANAVISQARG------------------TEARLRLELHGQRRPGPEP 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +          + D   +       A  +A     ++   T           A++I VL 
Sbjct: 329 E-------LRIFTDEPAE-------ANAVAARCRALVAGGTP----------AREIAVLF 364

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +               +  V        +   ++  M   R      D       
Sbjct: 365 RTNAQSEAYEKALSE----AGVPYVLQGAERFFERPEVRQAMIALRAATRSAD------- 413

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
             +PL     + +  +                 A       +   + +  L+ +A+  + 
Sbjct: 414 AGTPLPAAVVEALTAVGWAPD------------APPPGGAARERWEALAALVQLAEEYAA 461

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                                                         L     EL +    
Sbjct: 462 Q---------------------------------------AEEEPGLTGFTEELARRAAQ 482

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                      V + ++H+AKGLE   VFLV                             
Sbjct: 483 QHVPTVEG---VTLASLHSAKGLEWDAVFLVGLAEGTLP--------------------- 518

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                   EE  RLLYVG+TRA + L +   +  S   ++ + +
Sbjct: 519 --------------TTYAKTMEQVEEERRLLYVGITRAREWLWLSYATARSPGGRARRPS 564

Query: 681 WY 682
            +
Sbjct: 565 RF 566


>gi|149198591|ref|ZP_01875635.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
 gi|149138306|gb|EDM26715.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155]
          Length = 645

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 98/720 (13%), Positives = 208/720 (28%), Gaps = 144/720 (20%)

Query: 11  ESYELIYKDLWPLPYFQVSDINK-YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
           ++ E + + +  L       +   + S++        LK    L   S       +   +
Sbjct: 57  KAAEEMKQRIDRLMDQDCPVLAGTFHSIAF-----NDLKNLGILNNLSGIFDDTSQAKFI 111

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                 + F    +   +E  +        +++           + ++           L
Sbjct: 112 RKELKKKCFEAISSYSPREFMRFFSLCTNTMEEEIKIIAAHFPSWLSHS---------EL 162

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L A+Y + K K    D++D++   +  L+  ++S      + Q+  +IL+DE QDTS
Sbjct: 163 IHKLKANYCQHKNKLKAYDYDDILCTWSKALEGPNLS------LAQQCEYILVDEYQDTS 216

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q ++++ L +              + AVGD+ QSIYSF GA P+++ +          
Sbjct: 217 KLQIDILKKLCKQ----------HDNIMAVGDDCQSIYSFRGALPEQISQFSLDF----- 261

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   + L  ++RST  IL   +K          L        + RS    Q     
Sbjct: 262 ---TGAQSLTLEENYRSTQQILDFANK--------SMLMAKGVIQKKLRSGLDSQGQDPD 310

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +      +   +   +                                         + +
Sbjct: 311 ILFSSYHKTSEKEICKDVYL------------------------------------KRSQ 334

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I+     +L R       +            I         +TD   IK   A   F+ 
Sbjct: 335 GIKFDQQAILYRSTLHCLRLEMEL----TRQGIPYKKFGSKKITDKSHIKKFAAALSFVF 390

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           S E     +      +       + KI  +    + + +          +K    +  + 
Sbjct: 391 SSEVHQLALNQCLEIIPGLGPKTVEKILLEISNGKQLKD------IKLPTKSHDAVHELI 444

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF-TLRNEQNSYSSLQ 548
               +A   +       ++         +        D   +  +  T+  E     +  
Sbjct: 445 SFQKMAINKNN---LEELIDFTTPLIFNLK------EDNRKKLKDIYTISEELRKAQNWD 495

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +  +++          H      + + T+H+AKG E   V ++         +       
Sbjct: 496 DFYTDIILNMEVDHTDHDE---LLTLSTIHSAKGKEWQSVHILAVNEGAIPLQSS----- 547

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                               EE  RLLYV +TRA  QL +   +
Sbjct: 548 ---------------------------------QNIEEERRLLYVAITRAKKQLKLYVEN 574

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
           +    + S        +  S H  +  +   +    + +++    + +     T L + +
Sbjct: 575 SKELRESSRFLENLVTLKQSTHKTKHTQNTIVIEPKSNNDFQELTYVSEDRPGTALAQSD 634


>gi|262341237|ref|YP_003284092.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272574|gb|ACY40482.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 860

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/569 (16%), Positives = 192/569 (33%), Gaps = 74/569 (13%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS---AWIR 170
           +   K+F   ++ L++   +   +   K +  +L    L    N +L ++ +      I 
Sbjct: 326 YLLDKLFLKNISLLSIIHEIEKEFHFIKNEKKIL----LNAELNKILYEKIIQGTFPKIY 381

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            KI  +  H  IDE QD S +QW  IR L E+    + +         VGD KQSIY + 
Sbjct: 382 EKIGMQYKHYFIDEFQDISFLQWNNIRILVENALSERGSA------MIVGDPKQSIYRWR 435

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP-ENAQGLSE 289
           G + K   +   +   ++ N  +K     L  +FRS  +I+   + ++    +     + 
Sbjct: 436 GGDAK---QFIHLIYSKSKNYNKKLKT--LETNFRSYEEIVKFNNFLYQSISKIFHSTTY 490

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            +      +       G V++      ++ +                            I
Sbjct: 491 KNIYQNSKQKIFKKSGGYVEINFISSLENKNYK------------------------EYI 526

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                             K+     DI +LVR  ++                 +V  +  
Sbjct: 527 YSK------IKNKIKKLLKQKYVLSDIAILVRNNEEGHF----LSEKLVGDGFNVNTSVS 576

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
            ++ +HL I+ ++     + +                      + K    R + +     
Sbjct: 577 LLIKNHLEIQIIINFFYILANPH---------CYQKRVTLIFMLLKNKFIRTKKKDHDFI 627

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
           ++          + ++      ++     S ++    I+ A             +    +
Sbjct: 628 MKILFFPLDLFLKKILSKNSLTLNKLYNQSIYNISEEIIEAFGL-------LNKKNTASI 680

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
             FL+F  R  +N  +S+ + +   E          S +   +R+MT+H +KGL+ PVV 
Sbjct: 681 YSFLDFVYRFMKNIGNSIVDFLDYWESKKEKESIIISDHKKAIRVMTIHKSKGLQFPVVL 740

Query: 590 LVDTGSQVFSHKH-IKKMHIMPSLNDDPGIPIWIPQSKSR----NNIVSDLIKHLKKSTQ 644
           L  T   VFS       M++ P L           +S  +    +  + +  ++   +T 
Sbjct: 741 LPFTDWNVFSKNQEGGWMNVSPHLYHGLNTIYLEIKSYLKRIKHDRNIRNFYENYLSNTV 800

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            +   LLYV  TR+ +QLI+         
Sbjct: 801 FDNINLLYVATTRSIEQLILFSKLENEKS 829


>gi|83644830|ref|YP_433265.1| UvrD/REP helicase family protein [Hahella chejuensis KCTC 2396]
 gi|83632873|gb|ABC28840.1| UvrD/REP helicase family protein [Hahella chejuensis KCTC 2396]
          Length = 631

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/597 (15%), Positives = 177/597 (29%), Gaps = 123/597 (20%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           ++   L +++       D     ++         +   L  + +E K+K   +D +D++ 
Sbjct: 151 EVLACLSRARANGFGSIDYAPPMELSNRERMIDRIMIALWRNLDEEKRKLNAIDADDILY 210

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               +LK+    A +R  +   + H +IDE QD + +Q+E IR L  +            
Sbjct: 211 IARHVLKED---AELRDALQYHLKHFIIDEFQDCNYLQFEAIRLLAANAVS--------- 258

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD KQSIY F G+EP          +          S+  L  ++RS   ++ + 
Sbjct: 259 -ITVVGDAKQSIYQFRGSEPTVFQAFLEAYE--------SPSVRVLDTNYRSLNKLVQLS 309

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +K+     +           I  R+ + G           V    ++             
Sbjct: 310 NKLADSMPHRL------QDDIAMRAHKSGDGVVQFASPLNVMTESNE------------- 350

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                         +A  I  ++   T             +I VL R+      I     
Sbjct: 351 --------------VAANIQTLLDAGT----------SPDEIAVLYRENSQRLHIEQALI 386

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRF---ILSQEDDLSFVCMLKSPLFNFSED 451
                 +I  + N+   L      + L++L        S  ++     +L     N    
Sbjct: 387 A----RRIPYLVNEGVPLMRRRGPRMLLSLCLAPSSSESPLEEKYLEYILNHSRINIQWR 442

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS--PHDFFTLILG 509
                  +        ++I         K   +I+ I  +  +         +    IL 
Sbjct: 443 HKKSGKYKDEAIFKYLQFISDADGSLGEKATDIIRDIRLIKKLNHCPPSQVEEQLWEILL 502

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
                 +           V+ + L+   +       +L++   EL               
Sbjct: 503 RHTYFSREGME-SLPAKVVIQQLLDGLKK-----GVALEQSAEELLAINSEK-----TES 551

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           +++ +MT+H +KG E   VFL++                                     
Sbjct: 552 DKIHLMTIHASKGTEFDTVFLINATLSD-------------------------------- 579

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                     +   +EE  R+ YV +TRA ++L I                +   + 
Sbjct: 580 -------HKERDDNREEERRVFYVALTRAKNRLHISCPQYNERGLPLQPSPYIAELR 629


>gi|114320846|ref|YP_742529.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227240|gb|ABI57039.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 683

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 103/738 (13%), Positives = 211/738 (28%), Gaps = 131/738 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +   L                  +   +   +                   +
Sbjct: 58  AAGEMRERLAARLPKGVDLPWIGTFHSFGSRLLREHGQRIGVPGNATLMDAEDSRRMLDA 117

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL+  F  +    +       +     D         D    +RD            A  
Sbjct: 118 LLAGPFPDRTRRQRAMEAQDALAAAGLDP-----TEPDHLAPMRDALEAMGFGPGATA-- 170

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L + L   Y+  K++  ++DF DLI+  + LL++   +  +R ++ +++  I +DE QD
Sbjct: 171 RLVQRL-RRYDAEKRRAAIMDFADLILLPSRLLRQ---APDLRARLREQLRDITVDEAQD 226

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T   Q+ ++  L  +           RT+  VGD+ Q+IY +  A P  + R        
Sbjct: 227 TDGAQFHLLSLLIPE----------NRTVVLVGDDDQAIYEWRHARPANLRRFIEE---- 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                Q+  +  L  ++RST  I+     +             +       +        
Sbjct: 273 -----QQARVYRLERNYRSTPPIVDGAVSLVRHNRQRLEKRPWAVRGPEQAAPVT----- 322

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                       L + + A  +A  +   I + +          
Sbjct: 323 ----------------------------LVRHTRAEEMAEAVVQDIRSRLRAG------- 347

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              + A ++ VL RK +    +          + I         L  H  ++ ++A GR 
Sbjct: 348 ---LSADEVAVLYRKNRLARPLEGAL----LRHGIPYRVKAGMDLLGHADVRMMLAAGRL 400

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
             ++ D  +    L   +       + ++ +   +  T    +   A   + + +  +  
Sbjct: 401 AANRRDVRALSR-LADLIPGLGARGVSRLISSAGDPLTAAGQLPPQAAQAVERLRQALDN 459

Query: 488 IHEL--IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           +  L    ++Q+C     F   L   + R            + LD  L            
Sbjct: 460 LFRLGPQALSQWCLQTPVFAEWLN-HRARAALKRDGSRAAPEALDRALKPARARLGAVQR 518

Query: 546 SLQELISELE-------------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           ++   ++ L+             +   +     S     V + +VH AKGLE P V +  
Sbjct: 519 AINRRLAALDRESAPAQRWTNALEIAASASDDSSGEDACVTLCSVHGAKGLEWPEVHVFG 578

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +                                     L +  +    EE  RL Y
Sbjct: 579 FTEGLMP-----------------------------------LARDGRVDNLEEERRLAY 603

Query: 653 VGMTRASDQLIICKHS--NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           V +TR  D++++      +  + +          + +     E              E +
Sbjct: 604 VAITRGQDRVVLHHADRIDRGDGQGVGAAALSPFLEELQTGPEVAVIDNRAAVREASEVL 663

Query: 711 AYEWSTHHPENTPLEREE 728
             E  T   +     R +
Sbjct: 664 GGEPPTSPEDWLAAMRRQ 681


>gi|325479234|gb|EGC82330.1| UvrD/REP helicase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 597

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/541 (16%), Positives = 163/541 (30%), Gaps = 117/541 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE  K KN  +DF+D+ +    L++       +   I  +  +I +DE QDTSLIQ
Sbjct: 157 IYRAYENFKIKNFYIDFDDMQVIALKLIEND---KSLLNSIRNKYRYIQVDEGQDTSLIQ 213

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++I  +                L  V D+ QSIYSF  ++   +L  K I  +      
Sbjct: 214 FKIIEKIAA----------PNNNLMIVADDDQSIYSFRASDISYLLNFKNIYPES----- 258

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I L  + RS  +I+ +  +                                 L+ 
Sbjct: 259 ---KTIILNENHRSGKNIVDISSRFIDKNNFRYKK---------------------DLYT 294

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                 +      +  +  Y   +   +     A      I  +        +G    ++
Sbjct: 295 NNTFDSNITIKSFKNVYDQYKFIIKNITLDDKCAILFRNNIQALNMISFFMDDGIDFNLK 354

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             D                                      +   I+D   +  F     
Sbjct: 355 ISDP----------------------------------YFLESKIIEDFFDIIEFSNDFS 380

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQKFANCGISKFQHVIKYIHEL 491
               F  +        S+DDI K+  +  ++    + Y  +  +  I       K +  +
Sbjct: 381 KTEIFKEVYYKIGTFLSKDDIVKLEFKPINQNIFDFYYSSEIDDYKIDALIKTEKELKHI 440

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
            ++        F    LG K     F  R+  EV+   D F+   +         L +  
Sbjct: 441 RNLILSKKIS-FIYKYLGYKSYISNFSKRYKEEVV-NKDLFVESFINF----TKDLNDKK 494

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
              ++     +   ++N + + + ++H +KGLE   VFL++     F             
Sbjct: 495 EFEDKVNKLNRY-INSNKSNIILSSIHKSKGLEYDKVFLINLNENEFPM----------- 542

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           + D                              EE  R++YV MTRA  +L +      S
Sbjct: 543 IGDGDDY----------------------NKNLEEERRVMYVAMTRAKKELFLLSIKKRS 580

Query: 672 N 672
            
Sbjct: 581 G 581


>gi|262193492|ref|YP_003264701.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
 gi|262076839|gb|ACY12808.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365]
          Length = 1161

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 97/699 (13%), Positives = 179/699 (25%), Gaps = 121/699 (17%)

Query: 31   INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ------KNI 84
            +     L++   N    +  + L                 S  L      +      +  
Sbjct: 541  VEPAACLAITFTNRAAGELRERLDALLPGAGAGVAVHTFHSLALRILRENRVRAGLHRGF 600

Query: 85   ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS-----------------TLASL 127
                 ++    L + L     +   +  R     +  S                   +  
Sbjct: 601  RVAAESECVALLADALGCLPAKARSVLARLRRASVAASVAAGAGQGAAEQPPEASAESLD 660

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                  +  Y +A ++   LDF++L+     LL++ D+             H+ IDE QD
Sbjct: 661  DELARAHRVYRQALEEAARLDFDELLGRAEALLREDDIG----LAYRARFRHLSIDEYQD 716

Query: 188  TSLIQWEVIRSLTEDFFV------GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
                Q+ +I  L+ D         G++     R+L A+GD  Q+IY F GA+    LR +
Sbjct: 717  IDAQQYRLIALLSGDVGAAGMRDGGQDEAGGSRSLCAIGDPDQAIYGFRGADVGFFLRFR 776

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                +           ++L  ++RSTA I+    +  +          ++       +S 
Sbjct: 777  EEYPR--------TREVQLTRNYRSTATIVDAALQAIAPHSLVAERVLEAADAGEGAASL 828

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                       +  ++            TS+F           +   +            
Sbjct: 829  P-VHVVSAASARAEAETVVHSIEALIGGTSFFSMDSGRLDDIGVGVGVGAAPGE--RGAA 885

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
               N +   +   D  VL R    + L+            I         L D      L
Sbjct: 886  PTENDESDDLSFSDFAVLYRTDAQSGLLCEAL----ARSGIPFQKRSHHRLGDDPLTVAL 941

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            +   R         +     +SP     +  +     +               +   ++ 
Sbjct: 942  LGEMRDAT----AAAAAEDAESPPPGALQAFLDAASIRLRARLETAVAAGPTPDATAAEA 997

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
                      +  A+  +  D    +         F +    E    L            
Sbjct: 998  TTSAVTGDPALDPARIAAVADLLRPLAARCDDLDSFANELALEAEVDLW----------- 1046

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                                     A  + V ++T+H AKGLE  VVFLV     V   +
Sbjct: 1047 ------------------------DARADRVSLLTLHAAKGLEFRVVFLVGCEDGVLPLR 1082

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                                  +     E  RL +VGMTRA  +
Sbjct: 1083 WGSG----------------------------------RAEDLGEERRLFFVGMTRARQR 1108

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            L +          +  +      V D           + 
Sbjct: 1109 LYLLHARKRRWRGELCELPVSPFVRDIEDQLLARGSSRP 1147


>gi|319646518|ref|ZP_08000747.1| YjcD protein [Bacillus sp. BT1B_CT2]
 gi|317391106|gb|EFV71904.1| YjcD protein [Bacillus sp. BT1B_CT2]
          Length = 591

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 96/313 (30%), Gaps = 71/313 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L  HYEE K      DF+D+      L +++     I  +     + ILIDE QD +
Sbjct: 298 VHRLYRHYEEQKAARRQFDFDDMASACWQLFQEQPD---ILKRYQTRFHAILIDEFQDIN 354

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+ +I+ L           S    L  VGD+ QSIY+F G+ P  +L  ++   K   
Sbjct: 355 PVQYAIIKLLA----------SPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYPK--- 401

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   + L  ++RS+  I+   D V    +     +  +    R +           
Sbjct: 402 -----AKTVRLTTNYRSSHPIVASADMVVRKNKKRFPKTLSAARDDRQKPL--------- 447

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                  +D   +       A  I   I   I            
Sbjct: 448 -------------------LFYPYDEEEE-------AIMIVSDIQEKIEMG--------- 472

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFI 428
             +  D  +L R       I        +   I                ++ ++A     
Sbjct: 473 -AKPDDFAILYRTNSSGRAIFERL----HQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLS 527

Query: 429 LSQEDDLSFVCML 441
            +Q+D  +   +L
Sbjct: 528 QNQDDAEAVKQIL 540


>gi|167761055|ref|ZP_02433182.1| hypothetical protein CLOSCI_03453 [Clostridium scindens ATCC 35704]
 gi|167661289|gb|EDS05419.1| hypothetical protein CLOSCI_03453 [Clostridium scindens ATCC 35704]
          Length = 1064

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/608 (15%), Positives = 190/608 (31%), Gaps = 134/608 (22%)

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            F  +   FL  +      +  +   + +  L E+ +  +D   K   R + +K       
Sbjct: 559  FHAICLAFLKDQGREFSILDEEGAQEIARGLIEEYR-LKDTVKKFLCRVSAWKA---EGE 614

Query: 126  SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                       Y++  +   +LDF+DL++ T  ++++   SA      ++  +++L DE 
Sbjct: 615  LPQEDTDAFLAYQKYLEDRQLLDFDDLLLETLKMIEEPQASAG----WEKRFSYLLADEF 670

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
            QD + +Q+ ++++           +   R LF +GD  QSIY F GA+ +   R      
Sbjct: 671  QDINPLQYRLLKAW----------NKKGRELFVIGDPDQSIYGFRGADARCFDRLVEE-- 718

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                   +   +I L  ++RST  IL     V S                R  ++   + 
Sbjct: 719  ------HESTEVIRLVENYRSTPQILNAALAVISHNPG----------EDRRLAANREEG 762

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               +L        ++    ++ +  +    + +                    +  + + 
Sbjct: 763  DRARLVTAESGMGEAIFIVKEINRLAGGIGMLEAHEL----------------SGAVRTE 806

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            G+ R     +I +L R          L         I  +   R        ++  +   
Sbjct: 807  GRVRG--FDEIAILYRANHQA----DLLEKCLKKEGIPYIVAGRGSFLQEEKVRGSICFF 860

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
            R++ +  D L+    L+                              +   G    + V+
Sbjct: 861  RYLDNPMDILAKEQCLR----------------------------LLWNMDGNLAAEEVL 892

Query: 486  KYIH-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            + +  +   + Q   P  F  L +               E  + + + +   +  +    
Sbjct: 893  ERMAGKYRPLYQKKKPQKFLELWMEE----------LQLEDNEAVKKLVGMGVFYKAMPE 942

Query: 545  SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
              L   +    +         +     V +MT+H AKGLE PV F+      +       
Sbjct: 943  FMLA--VQLGIESDIKRCGNRNYASGAVTLMTLHGAKGLEFPVTFIYGARKGLIP----- 995

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                          L      +  EE  RLLYVGMTRA ++LI+
Sbjct: 996  ------------------------------LESEKGTTDLEEERRLLYVGMTRAMEELIL 1025

Query: 665  CKHSNTSN 672
                  S 
Sbjct: 1026 TTSKEASG 1033


>gi|282898445|ref|ZP_06306435.1| ATP-dependent DNA helicase PcrA [Raphidiopsis brookii D9]
 gi|281196611|gb|EFA71517.1| ATP-dependent DNA helicase PcrA [Raphidiopsis brookii D9]
          Length = 397

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 103/348 (29%), Gaps = 59/348 (16%)

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +   I N+              I      +L R    +         L   Y+I     
Sbjct: 8   FVINQIRNL--------TTNNPDITWGSFAILYRTNAQSRPFEE----LLVKYQIHYTVV 55

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETV 466
                 D   IKD+++  R I +  D +S + ++ +P     +  +  +     +   T+
Sbjct: 56  GGMKFYDRKEIKDVISYLRAINNPADTVSLLRVINTPRRGIGKSTVDALINASQQLGTTL 115

Query: 467 YE------YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           +E       +                 + +           +    IL      +  + +
Sbjct: 116 WEILSDETSVNTLTGRAAKSVTGFTSIMKKWQEKTTQVPASEVLEGILEDSGYLRDLMDQ 175

Query: 521 FGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMT 576
             +E  +    + E  N   + +  +  +   L + L+    +      S + + V +MT
Sbjct: 176 GTDEADNRISNVKELYNAVSQFQDENRGNDISLQAFLQSAALSSDLDNLSESRDAVSLMT 235

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE P+VFLV     +F                                      
Sbjct: 236 LHASKGLEFPIVFLVGLEQGLFPG----------------------------------YR 261

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS--NEKKSNQRTWY 682
                   EE  RL YVG+TR  ++L +           ++    + +
Sbjct: 262 SLQDPKALEEERRLCYVGITRTQERLYLSHARERRLYGSREPALPSQF 309


>gi|152965147|ref|YP_001360931.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
 gi|151359664|gb|ABS02667.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216]
          Length = 701

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 103/715 (14%), Positives = 187/715 (26%), Gaps = 169/715 (23%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A    Q    Q I      L              +       +  DL  +++ 
Sbjct: 92  ARTFHAAALRQLQFFWPQSIGGTLPNLVEHKAPLIADACNRLRIPADRTRVRDLSAEVEW 151

Query: 103 SQDEFIKIRDRFNTYKMFKSTLA---SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           ++   +   D                 L     L   YE+ K    V+DFED+++ T  +
Sbjct: 152 TKVMLVDPDDYVRVAAAAGRGEPGGLDLASVARLVRTYEDVKTDRAVIDFEDVLLLTAGI 211

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L   D    +   + ++  H ++DE QD S +Q  ++                 + L  V
Sbjct: 212 L---DERPDVAATVREQYRHFVVDEYQDVSPLQQRLLDLWLG----------GRQDLCVV 258

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF GA P+ +L   R             +++ L   +RST +++ + + V S
Sbjct: 259 GDASQTIYSFAGATPEHLLDFPRR--------HPGTTVVRLVRDYRSTPEVVGLANSVLS 310

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
           +          +   +   + R                                 S    
Sbjct: 311 MATGRH-----AQARLELIAQRPSGPPP---------------------------SFTAY 338

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A  +A  I+  +               AKDI +L R    +  +         D
Sbjct: 339 DDDVAEASGVAARIAAEVRAGR----------SAKDIAILFRTNGQSQALESAL----AD 384

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +  V            ++D + L R                 P  +   +    + + 
Sbjct: 385 AGVGYVVRGGERFFSRKEVRDAIVLLR----------GGARAALPGHDLGTETRAVLSSA 434

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                       + A       +   + +  L+ +A   +                    
Sbjct: 435 ---------GWDEKAPTAGGATRERWESLQALVVLADELA------------------EK 467

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           R G ++ D++DE +  +                            H+   + V + + H 
Sbjct: 468 RPGAQLSDLVDELVERSQA-------------------------QHAPTVDGVTLASFHA 502

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE  VVFLV     +                                     +    
Sbjct: 503 AKGLEWDVVFLVGVSEGLLP-----------------------------------ISFAE 527

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                EE  RLLYVG+TRA + + +                  + D V        R   
Sbjct: 528 TPDDVEEERRLLYVGVTRAREGIHLSWANSRTPGGRATRKPSRFLDAVRPQAAPAGRRAG 587

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                                  +  +  E  + +  D      +       +  
Sbjct: 588 AVTPAGARTKRTSGPLLCRVCGASLTVAVERKLGRCTDCPSSYDEAVFERLREWR 642


>gi|257068317|ref|YP_003154572.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
 gi|256559135|gb|ACU84982.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810]
          Length = 1058

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 112/1009 (11%), Positives = 264/1009 (26%), Gaps = 178/1009 (17%)

Query: 1   LKNRFGLS-LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           L++   +    E+  +    L        +        ++ TG       A+ + Q    
Sbjct: 86  LRDALAVHGAGEARAMTPPALGHALVRADALRRGLGEPTLVTGAEQDALLAELIAQREAW 145

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                                + +   + +     +L++ + ++ +  + +         
Sbjct: 146 H-------------------LEVDPGARTLPGFRTELRDLITRAAE--LGLTPADLEELG 184

Query: 120 FKSTLASLTLAKYLNAHY--------EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            +    +   A  +   Y          A      LD   L+     LL      A    
Sbjct: 185 HERGRPAWADAAAILRDYLGVLDLEASAALDAGPRLDSGALVRRAVRLLADPSTPAP--- 241

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                   +++D+ QD +    +++              ++   +        ++ +F G
Sbjct: 242 -----FRAVVVDDAQDLTAAGIDLV----------AALAAAGARVLVCACPDTAVDTFRG 286

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A P    R   +  +         +  +       TA +   VD +       +G    +
Sbjct: 287 ALPDAADRLHTLLPRPVEAMVLDGAHAQ-------TAPLTAAVDAL-------RGRLPLA 332

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                 R  R  + G +          +                          AR I  
Sbjct: 333 GAPAESRRPRAPRPGALVTLRAQDPLDE--------------------------ARLIGS 366

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-F 410
            + ++   +          +Q  D+ V+ R       +      L +   + V    R  
Sbjct: 367 ALRDLHHRE---------GVQYDDMAVVCRSGAAVADLAD----LLSRTGLPVRVPRRPQ 413

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEY 469
            L +  AI DL+ +    L+ +D      +    L   F + D  ++   R      +  
Sbjct: 414 PLREVPAIADLLRILEIGLAPQDAPLDPRLATELLRGPFGDADTLRLRRIRRLLLGAHRA 473

Query: 470 IQKFANCGISKF--------------------------QHVIKYIHELIH--IAQFCSPH 501
            +  +     +                             V + I  +     A      
Sbjct: 474 AEPDSETPSEQLLARALVDEEVPGLPAPEARDRAAAPIHRVREMIRAVREHPEADAQQVL 533

Query: 502 DFFTLILGAKKGRQQFI-----------SRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQE 549
                  G   G ++             SR     +D L E      R  ++   +   E
Sbjct: 534 WHAWNASGLAGGWRRAALGSAGDVDGARSRLAASRLDALLELFAAAERLTDRRPGAGALE 593

Query: 550 LISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           L+ ++             +A    + ++T     G     V L       +    ++   
Sbjct: 594 LVEQIRGQAVVEDTLAPAAAARGRLAVLTPAQLAGEHRDTVVLARLQEGAWPDLRLRSTL 653

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                  +  +     +          +    ++    +  RL    + RA  ++++   
Sbjct: 654 F---GAAELQLRAGARRGAELPIEPEAVRALQREQVIADELRLAVSALARARRRVLVTAV 710

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
            +  NE  +    +  M  D + + E +++        +    A        +   +   
Sbjct: 711 QDEQNEPSALFEAFEGMAADPWIDLETLRRDPGPAPDARRLVAALRRRLRGEDPQTVRDA 770

Query: 728 ETIKQLMDEQKIP----------KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                 +     P          +   +   ++ + P  L+PS ++         L+   
Sbjct: 771 ALALDALGRAGAPGTDPGRWYHQEPSSTAPLHEDDTPIRLSPSALERAVDCPQSWLMERA 830

Query: 778 QTFN-------RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                       G  +H L QV    P    ++ +        +  P  E  +    + R
Sbjct: 831 GGTRAGGPAQLIGTALHHLAQVHPRGPADAEEDLLAE-LHTLLRAVPGTETWSGRRRVRR 889

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
             +   +  A    +   ++V          + + G ID+I      + + + KT     
Sbjct: 890 AEDAARLLAAHLRSAGEPLAVEAPFEVELGRVQLRGSIDRIEGDPTGLHVVDLKTGRAAK 949

Query: 891 QEIEHIPYTHIAQLSIYEKIL------KDSYPNKS---LVCLLIYVSEP 930
              +        QL+ Y+  +      +   P+     +   L+YV   
Sbjct: 950 SAAKAEED---LQLAAYQAAVREGALTEQLGPDAPERLIGAQLVYVGTG 995


>gi|89073018|ref|ZP_01159565.1| hypothetical protein SKA34_12400 [Photobacterium sp. SKA34]
 gi|89051236|gb|EAR56692.1| hypothetical protein SKA34_12400 [Photobacterium sp. SKA34]
          Length = 773

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 100/661 (15%), Positives = 197/661 (29%), Gaps = 136/661 (20%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                    ++E  +K+   L F+D ++ T +LL   +    +R    Q+I  +++DE Q
Sbjct: 169 YHFIIEAYWNFETIRKERKQLFFDDWLVETVNLLANNEA---LRAYYHQQIQFMVVDEFQ 225

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D +  Q+ +++ L  +             L AVGD  Q IY + G+ P+ +L  ++    
Sbjct: 226 DINTAQYRLLKLLLGE----------QAQLVAVGDVDQCIYKWRGSAPQFMLNFEQDF-- 273

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    +   L  +FR    +      + +  +           TI H+S       
Sbjct: 274 ------TPATTYSLSHTFRFGHSLALAASHLIANNKQRF----HDFQTISHQSVA----- 318

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                      D+  +    +     IA +I+  I    I    
Sbjct: 319 ---------------------------DTPIEVIGTARQVGEIAQSIAEYIEQGGI---- 347

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                 A D+ +LVR+   T L             I        +L++   +K L+ + R
Sbjct: 348 ------ASDVAILVRRWSQTMLFELAF----LTKNIPFYMPVGSVLSNSREVKLLLDVMR 397

Query: 427 FILSQEDDLSFV-------CMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGI 478
           F   + +             M+  P        +  +C +  +     +  I K      
Sbjct: 398 FATGRYNQFQPYEKATLVFNMMSFPHCYVPNASLRPLCDELANTPIEQWLDIVKKTEKLQ 457

Query: 479 SKFQH-----VIKYIHELIHIAQF--CSPHDFFTL--ILGAKKGRQQFISRFGNEVIDVL 529
               H      ++ +  L     F     +  +     L     + +  +    E ++ L
Sbjct: 458 PALNHDNFTSRVELLMMLRRKGGFKALDVYRQYRRDSELDNWIWKTEATASEIEEAVERL 517

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           D         +Q+   +LQ      ++      R   +  + V++ T+  AKG E   V 
Sbjct: 518 DSVETVLASMDQDCEKALQYFEYYTQRSDS--LRQLESTTSNVQLTTIFRAKGCEYSQVH 575

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L       F + +   + I                                 +  EE  R
Sbjct: 576 LPYWDKDAFPYVNRSSVGIS--------------------------------ADTEEERR 603

Query: 650 LLYVGMTRASDQLIICKHSNTSNE----KKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           L YV +TRA     I      S +    +K    + + +   +    E   ++ L  ++ 
Sbjct: 604 LAYVAITRAKHNAKIYYSVENSKKDTYVRKDKNASQFILESKATLAREIGPQLYLEGALP 663

Query: 706 KD----------EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
            +               E     PE   +E     K           +  P+ ++  +  
Sbjct: 664 FNKSPIVQGYYQRLGRIEQMQAAPEPVEIELPAAGKNGQLSFSYLWAVEQPLPHNAEKLV 723

Query: 756 I 756
            
Sbjct: 724 R 724


>gi|329904285|ref|ZP_08273751.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548042|gb|EGF32776.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 631

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/605 (14%), Positives = 189/605 (31%), Gaps = 127/605 (20%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK--------- 131
           +K +  Q + + + D+ + L    ++  K R+R     + + ++    L           
Sbjct: 112 RKTVFLQSLRENNVDIDDFLNVGDEKTRKDRERIIQNYLEQFSVVKRELLTEEEIKEKYP 171

Query: 132 ------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                  +   Y+ A  ++  LDF+D+++  + +L ++    W       +  H+ +DE 
Sbjct: 172 SNESFLRIYQEYQGALVRSGGLDFDDILVYAHRILMEQP---WCAQIYRAKYKHLCVDEA 228

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD +  Q+E I+ L  D           +++  VGD  Q I+ F+G+    + +      
Sbjct: 229 QDLNKAQYEFIKVLCGDKV---------KSVMMVGDPNQMIFGFNGSSSDYLCKF---FP 276

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
              +       I EL  ++RS+  ++ + +K+                            
Sbjct: 277 LDFSA-----KIFELKENYRSSKSVIRLANKL---------------------------- 303

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                              + +        +    +    A  I+  ++ ++   T    
Sbjct: 304 -------------KPGSQIEADFVLDGQFEISSYKNEEEEAISISNKVNELLLQKTNTEI 350

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG--NDRFILTDHLAIKDLMA 423
                I   +++V+ R R     +  +         I       +R      +  K L  
Sbjct: 351 EGD--ISLSNMVVIARNRFVFLALEKILSE----KGIPYSLKKGERQAEPSSIFGKVLDL 404

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
             R  L+ +D +    +  +        ++  +    +    +    ++ +      +  
Sbjct: 405 AIRIRLNPKDWIDGKKLCTALKI-----EVPSLWGNDNILLEMANAARQSSMSFCDIYAE 459

Query: 484 VIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
           ++  I  L I        +D F  I+         + +  NE+   L E  +F       
Sbjct: 460 LLDAIQALDIEQPNIPKLYDNFNKIIKDLN--DAHLPKEDNELERSLQELDDFRKCWTTF 517

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L E ++         + A + +   + + TVHT KGLE  +VFL+     +F    
Sbjct: 518 KRKGLGESLASFRNAIALGQVADNYDPAGLTLSTVHTMKGLEKDIVFLMGMCEGIFPD-- 575

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                             +   K   EE     +V +TRA   +
Sbjct: 576 ---------------------------------YRANTKKELEEELNSAFVAITRAKRWI 602

Query: 663 IICKH 667
            +   
Sbjct: 603 FVSYP 607


>gi|298526678|ref|ZP_07014087.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|298496472|gb|EFI31766.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
          Length = 921

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/595 (14%), Positives = 161/595 (27%), Gaps = 106/595 (17%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
             +  +         +    +   L +            L     E      V+DF   +
Sbjct: 195 ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 254

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 255 ASAARLAATSP---QVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 305

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             L AVGD  QSIY + GA    + R          + G    ++EL  S+R+    L V
Sbjct: 306 LALTAVGDPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPVLELLTSWRNPPQALRV 362

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + + +           S      R       G V+                        
Sbjct: 363 ANGISAEARRR------SVAVRALRPRPDAPPGAVRCALL-------------------- 396

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                ++    +A  +                     ++     VLVR+  D   I    
Sbjct: 397 --PDVQAEREWIADHLRMRYQRAEADG----------VKPPTAAVLVRRNADAAAIADTL 444

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
           R       I         L     + +++A+ R +       + + +L  P +     D+
Sbjct: 445 RA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 500

Query: 454 FKICT-----------------------QRHETETVYEYIQK------FANCGISKFQHV 484
             +                            +   + + I        ++  G  +   +
Sbjct: 501 AALWRRALTLSGESPSTASPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGAL 560

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRN- 539
              +  L       S  D    +        +  +      G    + LD F +      
Sbjct: 561 AGELSALRGRLGH-SLPDLVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYA 619

Query: 540 ----EQNSYSSLQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                ++S +S+  L++ L+              +   + V+++TVH AKGLE  VV + 
Sbjct: 620 ERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVA 679

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
                VF     +   +       P +      + +    V D      +    +
Sbjct: 680 HLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSD 734


>gi|320532742|ref|ZP_08033528.1| HRDC domain protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135031|gb|EFW27193.1| HRDC domain protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 575

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 93/706 (13%), Positives = 177/706 (25%), Gaps = 162/706 (22%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLN 134
               + +          DL  +++ ++       D          T  +         + 
Sbjct: 9   GAAARRLGLSTDRATVRDLAAEVEWAKVTMTLPEDYAQAAVAAGRTGVAGQEAATVAQVL 68

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           + YEEAK +  V+DFED+++ T  +L        +  ++  +  H ++DE QD S +Q  
Sbjct: 69  SLYEEAKSERGVIDFEDVLLLTIGILLD---REDVAAQVRGQYKHFVVDEYQDVSPLQQR 125

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++                 R L  VGD  Q+IYSF GA P  +                 
Sbjct: 126 LLDLWLG----------RRRQLCVVGDVSQTIYSFTGATPAFLTGFTTRYD--------G 167

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              + L   +RST  ++++ ++V S      G        +   + R             
Sbjct: 168 ARTVRLSRDYRSTPQVVSLANRVLSRSRRGGGGLHLPAGAVELVAQRPSGPAV------- 220

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                          A      +  +              +   
Sbjct: 221 --------------------RFETYDDDIAEAEGAVAQVRRLQAAG----------VPLS 250

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           +I +L R    + +            +I  +        +   +K  MA+       E  
Sbjct: 251 EIAILYRTNSQSEVFEQAL----AGAQIGYLVRGGERFFEREEVKRAMAVILGAARTE-- 304

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                          +  +    +Q   T    E   +         +     ++ L   
Sbjct: 305 ---------------KASLTGDLSQDARTVLSREGWSEEPPAPRGAVRERWDALNAL--- 346

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                                                 +       Q   + L    +EL
Sbjct: 347 --------------------------------------VTLADEMAQTRGADLDAFHTEL 368

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +               V + ++H AKGLE   V L      +                 
Sbjct: 369 RERADAQNAPTVEG---VTLSSLHAAKGLEWDAVILAGVCEGLLP--------------- 410

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                               +     ++  EE  RLLYVG+TRA + LII      +   
Sbjct: 411 --------------------ISLAEGQAAIEEERRLLYVGVTRAREHLIISYARARNAGG 450

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           ++ ++    +              +     +  E      +     N P       ++L 
Sbjct: 451 RAARKPSRFLEGLWPTGHGTKDASRRQGRQSAKERSRQSAADFEANNDP-RTIALFEELR 509

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             +    K  S     +     L    +         SL+      
Sbjct: 510 AWRSEIAKERSRPAYTVFADATLRDIAVVKPTSLPQLSLIRGVGAT 555


>gi|323479631|gb|ADX79070.1| uvrD/REP helicase family protein [Enterococcus faecalis 62]
          Length = 606

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 92/588 (15%), Positives = 188/588 (31%), Gaps = 123/588 (20%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            +    ++ +  +   L ++L+  ++         N     +         + +   Y  
Sbjct: 116 KRAYFNSKMMLPEDKILHKELRAIEEHKKNFLYPDNIENNSEF--------RDIFETYNN 167

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             K N ++DF+D++  +  +L +      +     +   +ILIDE QD +  Q+ +I++L
Sbjct: 168 LLKSNRMIDFDDILYYSYRILIESPS---VAKNYTRLFKYILIDEAQDLNNTQYRIIKAL 224

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
           T +F          + L  VGD  QSIY F+G++ + +        K          +  
Sbjct: 225 TPNF----------KNLMMVGDSAQSIYGFNGSDSRIMTDM---FIKDYQ-----PKVFS 266

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  +FRST+ I+    K+   PE+            + ++ +                  
Sbjct: 267 LIENFRSTSKIIKAASKI--QPESKSLSVYPLEGEFQIQAFK------------------ 306

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                                +    A  I+  I  ++   + +  GK   I  +DI ++
Sbjct: 307 ---------------------NEVEEAEWISNKIVYLLDNGSKWVEGK---ITLEDIAII 342

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R R     I       + D+ +  + ++    T  + + +L    R I++  DDL    
Sbjct: 343 GRNRYLFSKIEEKLEESQIDFTLGGINSNVECETIEMKVFELG--IRIIVNPFDDL-HYR 399

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            L   L    ++  F      ++T    +      +  I  +  + K     +       
Sbjct: 400 QLNKYLNREGKESNFLEDILTNQTVNSAQVNINIFSSVIEAWNILHKNQESFVKSLNKIK 459

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                  I    K   Q                 N  ++       SL    +++     
Sbjct: 460 EKVLIEEIDEQFKFLIQGDIELWRTRW-------NKYVKQSVQGDRSLSYFRNQVSLGKL 512

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                   N++ + ++TVH +KGLE  VVF+V      F    +K               
Sbjct: 513 NT-----DNNSGISLLTVHMSKGLEFQVVFIVGMVEGTFPDYRVKTP------------- 554

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                 + ++E    ++V +TRA  +  +   
Sbjct: 555 ----------------------AQEKEELNNMFVALTRAKRECYLTYP 580


>gi|302524541|ref|ZP_07276883.1| DNA helicase II [Streptomyces sp. AA4]
 gi|302433436|gb|EFL05252.1| DNA helicase II [Streptomyces sp. AA4]
          Length = 699

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 102/712 (14%), Positives = 198/712 (27%), Gaps = 180/712 (25%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
             ++         +          +    + + +              L+        + 
Sbjct: 68  LAVTFTTRAAGEMRTRLRGLGVDAAQALTFHAAARR-----------QLRYFWPRVVGDR 116

Query: 65  RFSLLSSFF-LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKS 122
            + L+ + F L  +   +  + T+   +   DL  +++ S+   +   D      +M + 
Sbjct: 117 PWDLIDNKFRLVAQAAQRVRLSTE--TEVLRDLASEIEWSKASLVSPDDYPSVAARMQRD 174

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
           T A +     +   YEE K    VLDF+DL++ T  +L+K D    +  +        ++
Sbjct: 175 TPAPVAQVAEVYRWYEELKTNAQVLDFDDLLLQTTAVLEKHDA---VAAEFRDRYRCFVV 231

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD + +Q  ++ +                 L  VGD  Q+IYSF GA PK +L   R
Sbjct: 232 DEYQDVTPLQQRLLDAWLG----------GRDDLTVVGDANQTIYSFGGASPKSLLEFTR 281

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                      + +++ L   +RST  ++ + ++V             + + ++    R 
Sbjct: 282 RFP--------EATVVRLERDYRSTPQVVALANRVIGAARGRP-----AGSRLKLIGQRP 328

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                                              +    +  A  +A  +  ++  D  
Sbjct: 329 DGPEP---------------------------RFAEYEDEAAEASAVARRVRELLDAD-- 359

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   + A +I VL R    +               I  +            ++  M
Sbjct: 360 --------VPASEIAVLFRVNAQSEAYEQALTE----AGIPYLVRGGERFFQRTEVRQAM 407

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
           A  R    +   L  V  ++S L      +                             +
Sbjct: 408 AALRTASMEPTSLELVTAVRSVLARVGLTE---------------------QPPSGGAAK 446

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                +  L+ +A                                  +E        +  
Sbjct: 447 ERWDALLALVELA----------------------------------EELAATVEDAD-- 470

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L   ++ELEQ               V + ++H AKGLE   VFLV          H
Sbjct: 471 ----LPRFVAELEQRAAAQHPPTVEG---VTLASLHAAKGLEWDAVFLVGLSEGTMPILH 523

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                  +  EE  RL YVG+TRA + L
Sbjct: 524 ----------------------------------ADGDDAAIEEERRLFYVGVTRAREHL 549

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            +    +    +  N+R    +      +    +  +   +      +A   
Sbjct: 550 SLSWSLSRGPGRGRNRRRSRFLYGLIPEDHPAARVARSQQTAKPGSKVARCR 601


>gi|242241668|ref|ZP_04796113.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus
           epidermidis W23144]
 gi|242234878|gb|EES37189.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus
           epidermidis W23144]
          Length = 295

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 102/289 (35%), Gaps = 38/289 (13%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L ++  + L    VS  N             +  + + L            
Sbjct: 28  GAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAKEMKTRVEHLVGEEAQVIWMST 87

Query: 66  FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKS------------QDEFIKI 110
           F  +    L +       ++N    +   +   +K+ LK                    +
Sbjct: 88  FHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKSENIDSKRFEPRMFIGAISNL 147

Query: 111 RDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           ++   T +  +         +   +   Y+    +N  LDF+DLI+ T +L ++      
Sbjct: 148 KNELKTPEDAQKEANDFHSQMVATVYKGYQRQLSRNEALDFDDLIMTTINLFER---VPE 204

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  +  +I +DE QDT+  Q+ +++ L   F          + L  VGD  QSIY 
Sbjct: 205 TLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKF----------KNLCVVGDSDQSIYG 254

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           + GA+ + +L  +    +           I L  ++RST +IL   ++V
Sbjct: 255 WRGADIQNILSFEEDYPE--------AKTIFLEQNYRSTKNILNAANEV 295


>gi|239944126|ref|ZP_04696063.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
 gi|239990578|ref|ZP_04711242.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 739

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 101/784 (12%), Positives = 209/784 (26%), Gaps = 171/784 (21%)

Query: 2   KNRFGLSLN-ESYELIYKDLWPLPYFQVSDINKYVSLSMETG--NPTILKKAQTLQQASQ 58
           +  +G+         +    +        ++   +     TG    T    A    Q   
Sbjct: 56  RIAYGVRAGILQPATVLAVTF--TNRAAGEMRGRLRQLGATGVQARTFHSAALRQLQYFW 113

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ-DEFIKIRDRFNTY 117
            + +      L    +            +    +  D+  +++ ++  + +         
Sbjct: 114 PKAVGGELPRLLERKVQLVAEAAARCELRLDRTELRDVTGEIEWAKVTQTVPADYAAAVA 173

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           K  +       +   + + YE+ K+   V+DFED+++    +L+       I   +  + 
Sbjct: 174 KAQRDAPRDPAVLSQIYSAYEQLKRDRSVIDFEDVLLLMVGILQD---RGDIADHVRGQY 230

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            H ++DE QD S +Q  ++     D             L  VGD  Q+IYSF GA P  +
Sbjct: 231 QHFVVDEYQDVSPLQQRLLDLWVGD----------RDNLCVVGDASQTIYSFTGATPDHL 280

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L  +              ++++L   +RST  ++ + + + S         + +   +  
Sbjct: 281 LNFRTR--------HPGATVVKLVRDYRSTPQVVHLANGLLSQAHG-----KAADHRLEL 327

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            S R      V                    +T Y D   +       A   A  I ++I
Sbjct: 328 VSQRDKGPEPV--------------------YTEYGDEPTE-------AESTARRIRDLI 360

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                        + A +I VL R    + +          D  +           +   
Sbjct: 361 AAG----------VPAGEIAVLYRVNSQSEVYEQAL----ADAGVPYQLRGAERFFERAE 406

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           +++     R                                +    +++ +  +  A+  
Sbjct: 407 VREAGTALRGAA-----------------------------RAGRNDSLLDGAEDLASQV 437

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            +           L        P      +    +                    +    
Sbjct: 438 RA----------VLSTKGWTTRPPAGSGSVRDRWESLAAL---------------VRLAE 472

Query: 538 RNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             E     ++L +L+ EL++               V + ++H AKGLE   VFLV     
Sbjct: 473 DFETAKPGATLTDLVRELDERAAAQHAPTVQG---VTLASLHAAKGLEWDAVFLVGLTEG 529

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +                                     +         EE  RLLYVG+T
Sbjct: 530 MMP-----------------------------------IAYAKTDEQVEEERRLLYVGIT 554

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
           RA   L +    + S   ++++R    +     +                        + 
Sbjct: 555 RARVHLSLSWALSRSPGGRASRRPTRFL-----NGLRPGSTGSGARGGVGGGGGIDRGTG 609

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                      E   +     ++  +  +             PS +D      L    +D
Sbjct: 610 RAATAERTPAVERKPRSPVRCRVCGRTLTDAGEMKLMRCEECPSDMDEALYERLHDWRAD 669

Query: 777 NQTF 780
               
Sbjct: 670 QAAL 673


>gi|295394600|ref|ZP_06804819.1| superfamily I DNA and RNA helicase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972493|gb|EFG48349.1| superfamily I DNA and RNA helicase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 1041

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 114/965 (11%), Positives = 268/965 (27%), Gaps = 141/965 (14%)

Query: 1   LKNRF--GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
           L+N     +  + +   ++   + +     +      +L   +G    ++ A+ LQ    
Sbjct: 67  LRNELKSPVRSSATARSVHSYAFGIVAAHTATTKGVPALF-VSGADQDVRLAEQLQGYFD 125

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           +     ++        T   TP+        +     L++ + +                
Sbjct: 126 STVTGPQW--------TTSMTPE----LARTDVFRTQLRDSISEIMGH--DFSYDRIVEL 171

Query: 119 MFKSTLASLTLAKYLNAHYEEAKK--KNCVLDFEDLIINTNDLLKKR--------DVSAW 168
                     +  ++   YEE         +D   +      ++++         D +  
Sbjct: 172 AHTHNRPEWEVLAFIGREYEELLTFLGEGAVDTSAVFTKAKHIVEESRVVPGKAWDFAPE 231

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +          IL D VQD        +++L +                       +  S
Sbjct: 232 VLPAW------ILCDSVQDFPDSALGFLQALYQ----------RGVCFALTCSPDSATQS 275

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F G          R+            ++  L    R    I   VD +          S
Sbjct: 276 FRGGSGDVFAGRHRL------GVHTDIALDPLDPHIRGAGAITQTVDSLMRD-------S 322

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
            D    + + + R    G+ Q++                          + SS S  AR 
Sbjct: 323 ADPVHALGYMAPRGSAEGSSQVFSC------------------------ECSSGSNAARM 358

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I +               +   +I V+ R+      ++           I V  + 
Sbjct: 359 IASMIYDRHQDG----------VPFAEIAVVTRRASSATQLSDELAA----SGIPVRTSV 404

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET---ET 465
           R + +D   +  L  L     S E   +    +           +  +  +  +    E 
Sbjct: 405 RALASDPATLPLLRILSLPPESPEWPNAATACVTGAFGGLDALTLRSLQRELTQLSGVEG 464

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
             E + ++A    ++    ++    ++  AQ  S H+     + A     +    +    
Sbjct: 465 PLETLMEWALETDTELPAAVERAKRMVKAAQESS-HELAQYAVWAVWNAAEVADEWQENA 523

Query: 526 IDV--------------LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
           +                L            +  +     +  + Q       AH+A ++ 
Sbjct: 524 LRNPAGHHSSYLDAVIRLLALAEKLNEGATSQVTGRDFAMKVMSQKFAQDSLAHTALNDI 583

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + T           V + D    V+ +  ++                   +  S  N 
Sbjct: 584 VTVTTPAGVAHTHFDTVIVTDLQEGVWPNPTVRGTIFKTPQLMRVLKDPATQEELSSENF 643

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW--YDMVYDSF 689
                   ++ T  +  +L    ++RA  ++ +   +                      +
Sbjct: 644 SQHDFLARRRETIRDEGKLFVAALSRARTRVAVVAVNGHGELPSPLFTAVKGMPWTSQYW 703

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL----MDEQKIPKKLFS 745
            ++  +    L+           +      E++     + +K L    +          +
Sbjct: 704 VDEPDILPSTLSEIAGSARLQVNQALDSGDEDSAKPWAQLLKTLHSSGVSAADPNTWWLN 763

Query: 746 PIKNDI----NEPYILNPSTIDTKGKTNLESLLSDNQ-------TFNRGLIIHKLLQVIF 794
           P         +EP  ++PS ++T  +  L+   + N            G +IH++ Q   
Sbjct: 764 PSSELPAMPSDEPVRISPSQVETYDQCPLKWFFNQNSSQTVDTYPQAFGNLIHEIAQTYP 823

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-----SYSEV 849
                   + +  +  K  +     E++              +   +          +EV
Sbjct: 824 RG---GLADMLNHFDEKFEEFTFESEWERQREYADGRATVENLNEYLKNRGDKTFVAAEV 880

Query: 850 SVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            V   ++ P     +SGRID++  +     +I ++KT +++P +          QL+ Y+
Sbjct: 881 VVRSDLDVPLGPARVSGRIDRLEKTSDGAAYIVDFKTGNNLPSKPSVQEN---PQLATYQ 937

Query: 909 KILKD 913
             ++ 
Sbjct: 938 VAIEA 942


>gi|330446270|ref|ZP_08309922.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490461|dbj|GAA04419.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 774

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 96/625 (15%), Positives = 183/625 (29%), Gaps = 123/625 (19%)

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            ++   L Q    +K+   ++   K P   E L                           
Sbjct: 111 AIAKQLLRQMAANEKS-YQKQQTFKDPRTIELLMSFIGLVKAHMLPPKEVFELSDISDEY 169

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                   ++E  +K+   L F+D ++ T ++L   D    +R    Q+I  +++DE QD
Sbjct: 170 HFIIEAYWNFETIRKERKQLFFDDWLVETVNVLTNNDA---LRAHYHQQIQFMVVDEFQD 226

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            +  Q+ +++ L                L AVGD  Q IY + G+ P+ +L  ++     
Sbjct: 227 INTAQYRLLKLLLG----------PQAQLVAVGDVDQCIYKWRGSAPQFMLNFEQDF--- 273

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                       L  +FR    +      + +  +           TI H+S        
Sbjct: 274 -----APAKTYSLSHTFRFGHSLALAASHLIANNKQRF----HDFQTISHQSV------- 317

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                     D+  +    +     IA +I+  I          
Sbjct: 318 -------------------------NDTPVEVIGTARQVGEIAQSIAEFIEQGG------ 346

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                A D+ +LVR+   T L             I        +L++   +K LM + RF
Sbjct: 347 ----NASDVAILVRRWSQTMLFELAF----LTKNIPFYMPVGSVLSNSREVKLLMDVMRF 398

Query: 428 ILSQEDDLSF-------VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
              + + L           ++  P       ++  +C +   T              +  
Sbjct: 399 ATGRYNQLQPFEKATLVFNLMSFPHCYVPNANLRPLCDELANTPIEQWLNVISKTEKVQP 458

Query: 481 ------FQHVIKYIHELIHIAQF--CSPHDFFTL--ILGAKKGRQQFISRFGNEVIDVLD 530
                 F   ++ +  L     F     +  +     L     + +  +    E ++ LD
Sbjct: 459 NLNLDNFTARVELLMTLRRKGSFKALDVYRQYRRDSELDNWIWKTEATASEIEEAVERLD 518

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                    +Q    +L       ++      R    + ++V++ T+  AKG E   V+L
Sbjct: 519 SVETVLASMDQECEKALNYFEYYTQRSDS--LRQTEPSMSQVQLTTIFRAKGCEYSQVYL 576

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F + +   + I                                 +  EE  RL
Sbjct: 577 PYWDKDAFPYVNRSSVGIS--------------------------------ADTEEERRL 604

Query: 651 LYVGMTRASDQLIICKHSNTSNEKK 675
            YV +TRA     I      S ++ 
Sbjct: 605 AYVAITRAKHSAKIYYSVENSKKES 629


>gi|325478265|gb|EGC81384.1| UvrD/REP helicase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 848

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 111/868 (12%), Positives = 246/868 (28%), Gaps = 203/868 (23%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           + +  +   +  + + D   +    K       +A  +   YE+      +++F+ ++  
Sbjct: 145 ILDIFQTITNNLVDLEDLRKSSDDRKR------IAYDIYMTYEKILNDLGLINFQLILKR 198

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
             DLL    +   IR    + I+ ++IDE QDT+LIQ E+   +T+D             
Sbjct: 199 FYDLLIDPVIGDEIR----ENIDLVIIDEYQDTNLIQEEIAFRITKD-----------GN 243

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +   GD+ Q++YSF GA+P+ +L            +  K +  +L +++RS   I+    
Sbjct: 244 IIVFGDDDQALYSFRGADPRNLLDFSERF---YQYSKIKSTTYKLDINYRSNQFIVKKSK 300

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
                                                      +++ N +++  +     
Sbjct: 301 DFI---------------------------------------DEAKLNDKKDLVSVDNKE 321

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                  +  A          I           + +    I  L     ++         
Sbjct: 322 NTNTIVRARSAN---------ISNIVAIVKHLSKEVNLNQIAFLFPSFYNS--FPKQLEK 370

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 I V+            ++  + +     +                N   D+ + 
Sbjct: 371 GFEKAGIKVINRKSDKYFYRKEVRFFLYILLKYRNINQ------------INVDIDERYM 418

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
              Q+ +            +  + + + + ++I ++          +     +G K  + 
Sbjct: 419 DYYQKKKNAYRKYLASILEDENLRQDKEIDEFIGKI---THKEKISEIIYKAIGLKYYKN 475

Query: 516 QFISRFGNEVI--DVLDEFLNFTLRNEQ--NSYSSLQE------LISELEQYPPTIKRAH 565
                   E        +F+N  +  ++      +  E      L    ++   +     
Sbjct: 476 ILRCAGDEEKRVHKNTGKFINLGVDFDEIFAGEDNFYEKFIFSYLYIFYDKNAISEYDED 535

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            ++ + V  MT+H AKGLE  VVF+                                   
Sbjct: 536 DSDIDGVNFMTIHQAKGLEFEVVFVSSLNDYP---------------------------R 568

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             R+  +  + K  ++    ++ R  Y   TRA + L++                     
Sbjct: 569 GDRDKFLDVVRKKTREEIDLDFYRKYYTAFTRAKNLLVLF-------------------- 608

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                      + +           +   ST        +RE+ I     +  + K    
Sbjct: 609 --------DNSRDRRIQKFVNSLDTSSRLSTIDFRRENPKREKEILAFTTDIDVYKTCPR 660

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
             K      Y                     N++   G  +H L + I    ++  K  +
Sbjct: 661 KYKFIRKLSYKTY-----------------KNESLIFGSRVHALTEYI--YSDNFNKEDM 701

Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
            ++  KN          NLL    ++  +                        +   I+ 
Sbjct: 702 GNFLKKNPIYINP--VANLLNKAYQVKNS-----------------EVNYKTDRNFYILQ 742

Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLL 924
           G +D +        I + KT        E     +  QL  Y+ ++++    + +   LL
Sbjct: 743 GSLDLVLSDN---TIVDLKTGSF----DERTLDKYANQLITYKNLMEE--NGEKVKETLL 793

Query: 925 IYVSEPKVFIIPQNKLN-KAFAEISTKI 951
            ++ + K   +     +      I+  I
Sbjct: 794 YFIEQDKEIRVGARDFDIDEIDRIAKNI 821


>gi|58698850|ref|ZP_00373723.1| first chain of major exonuclease , putative [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|58534629|gb|EAL58755.1| first chain of major exonuclease , putative [Wolbachia endosymbiont
           of Drosophila ananassae]
          Length = 335

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 164/368 (44%), Gaps = 37/368 (10%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             +  N VRIMT+H +KGL++P+VFLVDT +   + + I        + D    P W  +
Sbjct: 1   MQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRNSESI--------IFDGTEAPFWCGK 52

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
           +   N     + +  K     EY RLLYV +TRA D+L I        ++   + +WYD+
Sbjct: 53  NN--NAYCDQVKREKKLEDYNEYLRLLYVALTRAEDELYILS------KEPVQKGSWYDL 104

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
           +  + + +   KK +    I K++      + ++P          +  +     +     
Sbjct: 105 I--TKYGEPYEKKQRGLRPIFKEKVEVLCVNANYPYIYKKRDYFDVPVISLPPALAHSSV 162

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
           S      ++   L  S  +      + +    +    RGLIIH +LQ +  + + +RKN+
Sbjct: 163 S------SQRVTLESSEKEGAEWIPVSATWMTDGYA-RGLIIHSILQYMPKIEKERRKNW 215

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
           +  Y      +  +++   +   I     N         +  SE+++SG I+   + +++
Sbjct: 216 VRKYLDN---INISEDKDEIYSKILAF--NEKYGYLFDLEGKSEITLSGIID--GEPVLV 268

Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
             R+D++ I+Q    I +YK+H +V      +      Q+  Y+ ++++ YPNK +  ++
Sbjct: 269 --RLDRLCITQDKAIIIDYKSHRNVSVS---LLNEIKKQMLTYKTLVQEIYPNKQVEFMV 323

Query: 925 IYVSEPKV 932
           I+V +  +
Sbjct: 324 IWVEDLTL 331


>gi|260904112|ref|ZP_05912434.1| UvrD/REP helicase [Brevibacterium linens BL2]
          Length = 1086

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 116/981 (11%), Positives = 266/981 (27%), Gaps = 117/981 (11%)

Query: 1   LKNRFGLSLNE----SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
           L+NR  +  +     +                        L   +G    +  A  L   
Sbjct: 61  LRNRLAVPRDAVLASAPARSISSFAYGIARAAHTTQTGDDLEFISGADQDVFLADLLAGH 120

Query: 57  SQTQCIEERFSLLS-------SFFLT--QKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
                    +           S F T  + F  +       +   +P      +++ +  
Sbjct: 121 ELGHGRGPAWPAEITAEVRSTSAFRTEVRDFLNRVMEFDFGVRIPAPSAGGGPEQTPEFV 180

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK--NCVLDFEDLIINTN-DLLKKRD 164
                      +             +   Y +          D   ++     ++L++  
Sbjct: 181 FDFGRSALDRVLEHHRDPRWEAVAQVLEEYLDIMSMPGYGGTDSATVLARAAFEILREPA 240

Query: 165 VSAWIR---YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                R   +  D     +L D VQD     W ++  L                L   G 
Sbjct: 241 EVTAGRAWTFAPDVVPTVVLADGVQDFPAASWGLLEQL----------RERGSALALFGS 290

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
            +     FHGA+   + R         + + ++F+ + LP    +  +++ V D      
Sbjct: 291 PETVTGRFHGADASIIDR---------SASDERFTTVVLPEVKNTADELVAVGDDFGRRI 341

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
               GL          R+          +          +  P+  + +           
Sbjct: 342 TTRWGLQHMPRPDGAARTGESADG----IEPVDAGPQQGEGEPEPVASSPDKVETHVFEG 397

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF------ 395
           A+   R +A  ++N +                 D+ VL R      ++            
Sbjct: 398 AASSYRYLARRVTNFVEDGHA----------WSDVAVLCRNTSTARVVANELSASGVATA 447

Query: 396 -LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            +     I         L       D                +V +    +  F    + 
Sbjct: 448 NIMQPLSIDPATAPLLELLARTPDFDDDESIAAQALSLAGSIYVRLDPVQIRRFKRV-VR 506

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
           K       + ++ + ++   +         I  +           PH+    I  A    
Sbjct: 507 KQFPAAKSSNSLAQALRSDIDDSSPPGLATISRMLHAAAEVGSVDPHEALWGIWEAAGIA 566

Query: 515 QQF----ISRFGNEVIDVLD---EFLNFTLRNEQNSYSSLQELISELEQYPP--TIKRAH 565
            ++    +    +     LD          +       + +     + +         A 
Sbjct: 567 DKWQTEVLKDPESVANAHLDSVLRLFTLAEKISDRGGFTARSFAGIVAEQDIAQDSLAAQ 626

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
           +   + V++ T  +   L  P+V + +    V+ +  I+   +   L+D   + +     
Sbjct: 627 AGTDDLVQVGTPSSLAHLRVPLVIIAEVNEGVWPNPKIRGGIL--GLDDLSAVLLTGETV 684

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            S     S      K++   E   L Y  +TRA + +I+   S+  +             
Sbjct: 685 TSDPGYHSHA----KRTNLREEGELFYTALTRAEEHVIVTAISDAESNPSPFFDVLAAGT 740

Query: 686 YDSFHNDE--RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
                + +   +        ++  E  A+  +         E+E   + + +  ++   L
Sbjct: 741 AKGTQDADGYAITHEDELLPLSLAEMAAHARARLLRAAADSEQETAAEDVEEWAQLMAAL 800

Query: 744 FSPIKNDINEPY--------------------ILNPSTIDTKGKTNLESLLSDNQ----- 778
            +                               ++PS +++    +L   L+ N      
Sbjct: 801 SATSSTVDPPERWRETEDITSAQPLYGAEDLVKVSPSQVESFTDCSLRWFLTRNGGDRPG 860

Query: 779 --TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP-AKEYKNLLLSITRLLENP 835
               + G IIH   +     P       I  +  +  K      E++     +  +    
Sbjct: 861 SLAQSLGTIIHAAAENYPQGPAS----AIREFVDEEFKTLDFDAEWERDREHVLAMKMAD 916

Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDI-----IISGRIDQISISQQNIFIFEYKTHHHVP 890
            +   +       + V  ++     D       ++GR+D+I  + + I I ++KT  + P
Sbjct: 917 RLGEYIKDSPGEPIGVEAQVYATGVDENGQEWKVTGRLDRIERTPEGIRIVDFKTGKNTP 976

Query: 891 QEIEHIPYTHIAQLSIYEKIL 911
              + +P    AQL +Y++ +
Sbjct: 977 -TGQEMPRH--AQLGVYQEAI 994


>gi|119511881|ref|ZP_01630980.1| UvrD/REP helicase [Nodularia spumigena CCY9414]
 gi|119463449|gb|EAW44387.1| UvrD/REP helicase [Nodularia spumigena CCY9414]
          Length = 811

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 96/647 (14%), Positives = 190/647 (29%), Gaps = 77/647 (11%)

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-KMFKSTLAS 126
           LL       + T +    +    +  PDL   +         + ++   + +        
Sbjct: 173 LLEGHQFDGEETERLRRQSVLRTEVLPDLATTVIHEAKSSGILPEKLREWSQKTTDKYGI 232

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L +A  L   Y+   + +  +D++D+I+    +L+        R+    ++  +  DE Q
Sbjct: 233 LRVAAGLYEQYQNLMRLHDFIDYDDMILAALRVLENDSA----RHIEQNQVFAVFEDEAQ 288

Query: 187 DTSLIQWEVIRSLTED---------------------FFVGKNTHSSPRTLFAVGDEKQS 225
           D+S +Q +++  L  +                           +  S   L  VGD  Q+
Sbjct: 289 DSSPLQTKLLEILATNQGEEAGGQGAGGRGEELGALVLESSPPSFHSALQLVRVGDPNQA 348

Query: 226 IYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           I S F  A+P                  +   +  +  + RST  I+   +       + 
Sbjct: 349 INSTFTPADPIYFREFC-------GVCDRLGKLATMDQAGRSTRIIIAAANFALEWVNSF 401

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
             L    +     RS          +     S   +  NP           L        
Sbjct: 402 YQLKNQPSPPPPFRSQN--------IRPVNTSDPQTDANPLPVG---RGLELYTPRDIYH 450

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
               ++  I  +   +    +G           +LVR+ +    +T +   +  ++KI++
Sbjct: 451 TVELLSQRIVELFTQNPKEISG----------AILVREHRQGRWLTEMLTPMCKEHKITL 500

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--FSEDDIFKICTQRHE 462
                     H+  ++++ L +F             L+  +        D+  + +   E
Sbjct: 501 YDVGESDRRSHIP-QEMLGLLQFCDRPHSPDYLKAALEVLVQRQLIPTQDLNALASLPEE 559

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
               + Y    A       +    +   L+        +     +    K  Q  ++   
Sbjct: 560 ----FLYPGPLAELQTDTVKKSAHFCRSLLRARLELPLYQLIAFLALTLKYDQAELAT-- 613

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQEL-----ISELEQYPPTIKRAHSANHNEVRIMTV 577
               D L E +N  +    +  + L  L         E        A      ++ I+T+
Sbjct: 614 ---ADKLAERVNQQITENNSMEAMLCALSEIVTSERFEAVETDDLDARYTRRGQLTIITM 670

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKK-----MHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           H AKGL+   VF+      +   K         +                   +S    V
Sbjct: 671 HKAKGLDWDYVFMPFLHENLIPGKFWVTPKSQFLGDFTLSEVARAQIRTAIHGESNLPHV 730

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
           S   +  K     E  RLLYV MTRA   L +             + 
Sbjct: 731 SQAWEQAKHLKTSEEYRLLYVAMTRAKRLLWMSASQQAPFTWSKPEN 777


>gi|160947350|ref|ZP_02094517.1| hypothetical protein PEPMIC_01284 [Parvimonas micra ATCC 33270]
 gi|158446484|gb|EDP23479.1| hypothetical protein PEPMIC_01284 [Parvimonas micra ATCC 33270]
          Length = 615

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 95/558 (17%), Positives = 170/558 (30%), Gaps = 114/558 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L   L   Y+E K +N  +DF DL+I  N+ +        +   +        IDE QDT
Sbjct: 166 LMLKLYNLYDEIKIQNNFMDFNDLLILANEYISTD---KKLLKALKNRYKFFQIDEGQDT 222

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           S +Q+E+IR +                +F V D+ QSIYSF GA P+ +L  K I     
Sbjct: 223 STLQFEIIRKIV----------FPENNVFIVADDDQSIYSFRGASPENLLNFKNIYPNS- 271

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   I  +  +FRST                                         
Sbjct: 272 -------KIFFMDKNFRST----------------------------------------- 283

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
              + ++   +      +  +        +ESS  +L     + + N I           
Sbjct: 284 ---KNIIKISNKIIQGNKIRYEKTSKHTTEESSQIML-----FKVKNSIIQARELLKRIS 335

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            +   + I +L R    +  +  + +    D+    V  ++F    +  + D+  +  F 
Sbjct: 336 EINPNETIGILYRNNVSSLYVADILKNNDIDF---FVKENKFDFYSNRILNDVKNILSFS 392

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
               D   F  +         +D I K+   +   + + E +                 +
Sbjct: 393 EDTSDLEVFKRIYFKLNAYIKKDFITKLEY-KPYNQCILESLLDLDELNDFYLNKF-TSL 450

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
                  +     D    IL          +         L+   N      +     L+
Sbjct: 451 RNNFKRLKRMKMEDKIDCILYEIGYGDYLDNFNDFS---NLN--YNLIFDLIKYLSKDLK 505

Query: 549 ELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                +        + +  S++ + + I T+H+AKGLE   VF++D     F  K +   
Sbjct: 506 TFGEFIEKLDKLKELLKNASSSKSNISISTIHSAKGLEYDNVFIIDLIDGEFPQKSVLNS 565

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             +   EE  RL YV MTRA  +L +  
Sbjct: 566 F--------------------------------DEKLLEEERRLFYVAMTRARKRLFLFT 593

Query: 667 HSNTSNEKKSNQRTWYDM 684
               +N    +   + ++
Sbjct: 594 IKERNNLPVESSIFYNEL 611


>gi|328884887|emb|CCA58126.1| ATP-dependent DNA helicase UvrD or PcrA [Streptomyces venezuelae
           ATCC 10712]
          Length = 726

 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 88/642 (13%), Positives = 172/642 (26%), Gaps = 161/642 (25%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + A YE+ K+   V+DFED+++ T  +L+       I  +I  +  H ++DE QD S +
Sbjct: 188 QIYAMYEQLKRDRSVIDFEDVLLLTVGILQD---RHDIADQIRSQYQHFVVDEYQDVSPL 244

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++     D             L  VGD  Q+IYSF GA P  +L  +          
Sbjct: 245 QQRLLDLWLGD----------RDNLCVVGDASQTIYSFTGATPDHLLNFRTR-------- 286

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               ++++L   +RST  ++ + + + S           +   +   S R          
Sbjct: 287 HPGATVVKLVRDYRSTPQVVHLANGLLSQARGR-----AADHRLELISQRDPGPEPT--- 338

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                     + +     A   A  I ++I             +
Sbjct: 339 ------------------------YTEYADEPTEAEGTARRIRDLIAAG----------V 364

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A +I VL R    + +          D  +           +   +++     R     
Sbjct: 365 PAGEIAVLYRINAQSEVYEQAL----ADAGVPYQLRGAERFFERTEVREAGIALRGAA-- 418

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
                                      +    +++ +  +   +   +           L
Sbjct: 419 ---------------------------RAGGNDSLLDAAEDLPSQVRA----------VL 441

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQEL 550
                   P      +    +     +                      +    ++L +L
Sbjct: 442 STKGWTSRPPAGSGAVRDRWESLAALVR---------------LAEDFARAKPGATLSDL 486

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           ++EL++               V + ++H AKGLE   VFLV     +             
Sbjct: 487 VAELDERAAAQHAPTVQG---VTLASLHAAKGLEWDAVFLVGLTEGMLP----------- 532

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                   +         EE  RLLYVG+TRA   L +    + 
Sbjct: 533 ------------------------ITYAKTDEQVEEERRLLYVGVTRARLHLTLSWALSR 568

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
           S   +++ R     +         +  +    S + +                       
Sbjct: 569 SPGGRAS-RRPSRFLKGLRPGSGALGTVTPGASGSFERGGPAARRRGPRGPVLCRVCGVT 627

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                  K+ +    P   D      L     +   +    +
Sbjct: 628 LTEAGAMKLLRCEDCPSDMDEALYERLRDWRSEQARELGQPA 669


>gi|260436511|ref|ZP_05790481.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp.
            WH 8109]
 gi|260414385|gb|EEX07681.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp.
            WH 8109]
          Length = 1206

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 99/894 (11%), Positives = 227/894 (25%), Gaps = 170/894 (19%)

Query: 109  KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
             ++                 L +      +  +++  V+ F  L+      +   D    
Sbjct: 330  ALQAAVAALWDAPIERTWQYLLERGLQELDRRRRRRGVITFGGLL----AAMDPGDGDVA 385

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                + Q    +++DE QDT  +QW +++                  L  VGD KQ+IY 
Sbjct: 386  WLAPLQQRYRAVMVDEFQDTDPVQWRLLQRAFGG--------GERHLLLMVGDPKQAIYR 437

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F G +    +  +   +           I  L  +FR+TA ++  ++++ +       L 
Sbjct: 438  FRGGDLATYMAARDQVE----------RIDHLLDNFRTTAPLMEGLNRLMAPGLPRSELP 487

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
              +       +          L     +         +                  LA  
Sbjct: 488  VPAVQPRSSAAPPQDAPALQLLLLSTEAPSSRSALEAELP--------------QRLAAM 533

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +   +              +  +   D+ VLV + +         R       +      
Sbjct: 534  VLEQLQQ------------RDDLTPADLCVLVSRHQQA----EDLRRALGVCGLPTRLVT 577

Query: 409  RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET--V 466
            +  + +  A   L      +    DD     +  S L   + D +      +   +   +
Sbjct: 578  QGDVLESEAALLLQWFLDALAEPGDDARLRLLACSGLMTIAPDALEPALLDQLALQLRGL 637

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
             E + +    G        + +  L    +          ++     RQ           
Sbjct: 638  AEAMPRLGLLGALADLLRGEQMAGLSERGRMLGDLQQAARLVQEAMHRQG---------- 687

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                  L+     +      L       +  P   +       + + ++TVH +KGLE P
Sbjct: 688  ------LDVATAADWLRRERLHPS----QPVPEARQPHSDQADSAIAVVTVHRSKGLEYP 737

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VV                      S      + +   +                +     
Sbjct: 738  VVICPYLWQAP-PAVSGPLWRDPRSGECLVRLDVHWGEGWQAAQQAQREAAAEAER---- 792

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
               L YV +TRA  QL++      + ++ S    W      +    + +   +L+ ++ +
Sbjct: 793  ---LAYVAVTRAQSQLVLIWAR-ANGQEDSPLPAWLFGAEAAGDAIDSLTDERLSQALAE 848

Query: 707  DEWIA------YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
             +             +     +PL  E      + ++       +     I     +   
Sbjct: 849  RQVAISIDGLVESLPSGKRWRSPLLAEPLALGSIPKRIDRSWGRASYSAWIASSDDVQLH 908

Query: 761  TIDTKGKTNLESLL-------------------SDNQTFNRGLIIHKLLQVIFTLPEHK- 800
                      E L                    +  +    G  +H++L+          
Sbjct: 909  EQGRDRDPGAEELTLKSTAARAEPAWSETGPLTAFPRGAGAGDCLHRILEQFPFSAAEAS 968

Query: 801  --RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--------CDSYSEVS 850
              R+                    ++L  + ++L+ P+     +             E+S
Sbjct: 969  EPRQRLELIAAELRRAGLDPDLQNDVLTGLEQVLQTPLGGALGALSLDRLGPHQRLPELS 1028

Query: 851  VSGKINCP------------------------------KKDIIISGRIDQISISQ--QNI 878
                +                                      ++G ID +      Q  
Sbjct: 1029 FDLPVQHVRTADLVAAFGCDAEARFGRTYSPALASLSINSRGFLTGSIDLVFQDPRHQRW 1088

Query: 879  FIFEYKTHHHVPQ-------------------EIEHIPYTHIAQLSIYEKILKD 913
            ++ ++K++    +                   E + + + +  Q  +Y   L  
Sbjct: 1089 WVLDWKSNWIGERRTGAEPGLCGPHHYSQEAMEEQMLHHHYPLQAHLYLVALHR 1142


>gi|288871488|ref|ZP_06410194.1| putative DNA helicase II [Clostridium hathewayi DSM 13479]
 gi|288863275|gb|EFC95573.1| putative DNA helicase II [Clostridium hathewayi DSM 13479]
          Length = 854

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 108/343 (31%), Gaps = 61/343 (17%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           F  +    L +         T     +  D  E++       + +  R    ++      
Sbjct: 565 FHSICYDLLKKSG----MEFTLADEVEMKDTAEEIIAEMQ--LNLSARQFLRQISAEKCG 618

Query: 126 SLTLAK----YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                +         Y++  K+  +LDF+DL++ T  L ++   +      + Q  +++L
Sbjct: 619 LEKQTETCPKEAYQAYQKRLKEQGILDFDDLLLETLHLFEEDGKNKT----LRQGFSYLL 674

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S +Q+ +IR            +   R LF +GD  Q+IYSF G++ +   + K
Sbjct: 675 VDEFQDISPVQYRLIREW----------NKGGRELFVIGDPDQAIYSFRGSDERCFEKLK 724

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         + I L  ++RST  IL     V S     +                
Sbjct: 725 EDWPN--------VTTICLEQNYRSTPQILDAASNVISQNRGQKRRLIPQKRK------- 769

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                                        +    + ++  A+    R+   I  +     
Sbjct: 770 ----------------------GVPVRLVTAAGEMSEDIFAAKEINRLIGGIDMLDAQGH 807

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
                  RV    +I VL R  +   L+    +  +    +  
Sbjct: 808 QEMGDGHRVRSFSEIAVLYRTNRQAELLETCLKKKEFLMWLPA 850


>gi|282898446|ref|ZP_06306436.1| hypothetical protein CRD_02984 [Raphidiopsis brookii D9]
 gi|281196612|gb|EFA71518.1| hypothetical protein CRD_02984 [Raphidiopsis brookii D9]
          Length = 328

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 97/233 (41%), Gaps = 9/233 (3%)

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT--LAKYLNAH 136
           T  K I+T+++N  S       K  +      +++  + + F+    +    +   +   
Sbjct: 87  TLIKEIVTKQLNLDSKKFDP--KSVRYAISNAKNQGLSPREFEEQQPNYRGRVIGEVYNL 144

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++    N  LDF+DLI+    L  + +    +      +  HIL+DE QDT+  Q+E++
Sbjct: 145 YQDQLAVNNSLDFDDLILVPTRLFGQNE---QVLAYWHNKFRHILVDEYQDTNRTQYELL 201

Query: 197 RSLTEDFF-VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           R L  +        +   R++F VGD  QSIYSF  A+   +L  ++       +   + 
Sbjct: 202 RLLVTNGECRKNQWNWDNRSVFVVGDADQSIYSFRMADFTILLEFQQDFGDGLDDDDTR- 260

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
           ++++L  ++RS  +IL   +++              T  +            V
Sbjct: 261 TMVKLEENYRSCENILQAANELIENNTERIDKILKPTRDVGESIYFHKADDEV 313


>gi|302521806|ref|ZP_07274148.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
 gi|302430701|gb|EFL02517.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78]
          Length = 756

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 95/649 (14%), Positives = 175/649 (26%), Gaps = 159/649 (24%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K+ +  +DFED+++ T  +L+       I  ++  +  H  +DE QD S
Sbjct: 186 TARVYAQYEALKRASGRIDFEDVLLLTIAILQD---REDIAQQVRSQYRHFTVDEYQDVS 242

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     +             +  VGD  Q+IYSF GA P+ +L           
Sbjct: 243 PLQQRLLDLWLGE----------RDDVCVVGDASQTIYSFTGATPEHLLGF--------P 284

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 +++ L   +RST  I+ + + + S           +   +   + R        
Sbjct: 285 ARHPVATVVRLVRDYRSTPQIVHLANNLLSHATG-----PAARQRLELVAQRPPGPVP-- 337

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                       + +     A  +A+ I  ++            
Sbjct: 338 -------------------------ESTEYADEVAEAEDVAHRIRALVAEG--------- 363

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            + A  I VL R    + L          D  +           D   I+  ++  R   
Sbjct: 364 -VPAAHIAVLFRTNGQSNLYEQAL----GDAGVPYRLRGAEAFFDRPEIRSALSAVRAAA 418

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                 +    L         D    +  Q       +         G    +   + + 
Sbjct: 419 H---SGANDTAL---------DLDAPLPAQLRRVLVSHRLWTAQPPAGSGAVRERWESLA 466

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L+ +A                                  +E             ++L +
Sbjct: 467 ALVRLA----------------------------------EELARA------RPGAALTD 486

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L +EL          H+   + V + ++H AKGLE   VFLV     +            
Sbjct: 487 LAAEL---ADRQANQHAPTVDGVTLASLHAAKGLEWDAVFLVGLAEGMLP---------- 533

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                    +     +   EE  RL YVG+TRA  +L +     
Sbjct: 534 -------------------------ITYAQTEEQVEEERRLFYVGITRARSRLHLSWSL- 567

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
            S               D+       +       +      A     H P+    ER   
Sbjct: 568 -SRTPGGWGGRKPSRFLDALRTPGSARPASDAPRLRTGRAPATNGERHTPDRGAGERPVP 626

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            ++     ++  +  +             PS +D      L     +  
Sbjct: 627 RRRAPARCRVCGRTLTEAGEMKLMRCETCPSDMDEGVYQRLRDWRGERA 675


>gi|256825725|ref|YP_003149685.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
 gi|256689118|gb|ACV06920.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547]
          Length = 1083

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 114/982 (11%), Positives = 244/982 (24%), Gaps = 174/982 (17%)

Query: 29   SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88
            + +    + ++ TG       A+ L  A+Q     +      +         +  + TQ 
Sbjct: 96   ARLTDAPAPTLLTGADQDAVLAELLASAAQDDAAADAAGWPEAV--------RAALGTQG 147

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE--AKKKNCV 146
               +  DL  +  +      ++ + F+  +    T      A  L   YE+  A      
Sbjct: 148  FRDQVRDLFMRAVEHGVTAGELAE-FDDRQGPDGTPGLWRAAGRLMREYEQVTALSSQAA 206

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +D   ++    DLL    V   +       +  +L+D+ Q+ +     ++ +L       
Sbjct: 207  VDAAWVVAAAADLL---VVDDEVAEDAAGRLQLVLVDDAQELTAGTLALMDALAR----- 258

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                +        GD   ++  F GA P   L   R                 LP S R 
Sbjct: 259  ---RTPRARWVLAGDPDAAVQGFRGARPGAFLEWARD-----------GVSEVLPCSHRH 304

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
               +  V  ++                 + HR       G       V            
Sbjct: 305  GPALRAVAGRIAERI---------GAHGVEHRRPGPRADGEGSGGPGVAPSEAGDGPGVA 355

Query: 327  ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR--VIQAKDILVLVRKRK 384
                   ++          A  +  ++   +   +     +     +    + V+ R R 
Sbjct: 356  GGSVRPEEA----------AALVFPSVHAELSHVSTVLRREHVLAGVPWGRMAVVARGRG 405

Query: 385  DTPLITFLTRFLKNDYKISV-VGNDRFILTDHLAIKDLMALGRFILSQE----------- 432
             T       R       + V V      +T    +  L+ L    L              
Sbjct: 406  RT----EQVRRALERAGVPVQVSGGGQPVTGQPVVATLLDLVVAALDLARLRPGAFAGQG 461

Query: 433  -------DDLSFVCMLKSPLFNFSEDDIFKICTQRH----------ETETVYEYIQKFAN 475
                   D       L SP+    +  + ++                 E + + +   A+
Sbjct: 462  AGSAAVVDQERITGWLTSPVGGLDQTSVRRLRRVLRAEAGAPTGVTSGELLEQAVLDPAH 521

Query: 476  CGISKFQH--VIKYIHEL--------------IHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                +      ++ +                    A           +         +  
Sbjct: 522  PWERRGAETGALRRLATALHAGVAAARRTPDGRGWALGVDAETVLWAVWDGLGLASGWQR 581

Query: 520  RF------GNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISELEQYP-PTIKRAHSAN 568
            +       G      LD          +  E+   +     +  +               
Sbjct: 582  QALAGGVAGRRADRELDAVLGLFAAAEQFVERRPGAGPDVFVDWMRSSQVARDSLVLGRQ 641

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             + V+++T  TA G E  VV +V   + V+    ++            G  +   +    
Sbjct: 642  RDAVQVLTPQTAAGHEWEVVSVVGVQAGVWPDLRLR------------GSLVGSSRLVDL 689

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                +  +     S + +  R   V  TRA+  L++    +T     +       +   +
Sbjct: 690  VEGRAATVADELASVRHDETRQFLVACTRATRCLLVTAVRDTEESPSALLNLVEPLPDGA 749

Query: 689  FHNDERVKKIKLT------------------------NSINKDEWIAYEWSTHHPENTPL 724
                    +  L                                      +        +
Sbjct: 750  EERPWAPWEPPLDLRHQVALARRELLAAAGADTGEDSAPGEHRIDPGARAAWAAELAALV 809

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT----- 779
              E           + +   +      +    + PS + T     L   LS +       
Sbjct: 810  RSEVPRAHPEQWWALRQVTSARAPWPADTVPSVRPSALGTYQDCALRWFLSTHGGSTPPG 869

Query: 780  --FNRGLIIHKLLQVIFTLPEHKRKNFITSY---CTKNAKLWPAKEYKNLLLSITRLLEN 834
                 G+++H LL      P                     W  +E + +   + R    
Sbjct: 870  RSQELGILLHDLLAERPEDPVPALAAEAERRWAELGSPEVWWSRRERERMAEWLRRY--- 926

Query: 835  PMMTTAMSCDSYSE-VSVSGKINCPKKDIIISGRIDQISISQ--QNIFIFEYKTHHHVPQ 891
                     +S  E V     +    + + ++GR+D++        + + + KT    P 
Sbjct: 927  ----EIYRRESGRELVGTELPLAVEAEGVRLAGRVDRLERHPSSGALHVADLKTGFVGP- 981

Query: 892  EIEHIPYTHIAQLSIYEKILKD 913
                +P     QL  Y+  +  
Sbjct: 982  -PSELPGN--PQLGAYQVAVAA 1000


>gi|119026323|ref|YP_910168.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765907|dbj|BAF40086.1| widely conserved ATP-dependent DNA helicase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 1356

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/669 (13%), Positives = 182/669 (27%), Gaps = 122/669 (18%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                +     +  ++ V          + + A+ L+         +           + 
Sbjct: 184 AIAGAMIGSDCTSFDEAVERVRAWDKAFVAQVAKALEDEDVPDDEPKV---------GKA 234

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
              +K         +  + + +  +                    T     L   L A Y
Sbjct: 235 PKQKKKESDTAFETRMREYRAQCHQLC---------VYKTAQLAGTARKRDLLLDLVADY 285

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
              K+   + +F D  I    L+ +      I     +   H+L+DE QDTS  Q  ++ 
Sbjct: 286 HAEKRALNMAEFSDFTIAAFQLVTRFPS---IGATYRKRYTHVLLDEYQDTSTTQAALLT 342

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
           +L       ++  +      AVGD  QSIY++ GA P      +      AT+       
Sbjct: 343 ALFHADSTHRSAVN------AVGDPFQSIYAWRGASPGAFRMLQHDFGHDATD-----KP 391

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
             L ++ R++  +L   + +              T  +R  + R G     ++    ++ 
Sbjct: 392 YTLTVTRRNSRMVLEAANNL--------------TKPLRLPARRRGSSLMREVDVPPLAN 437

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
            D+                  ++      + IA      +   T              + 
Sbjct: 438 IDNAPEGTLGVLGYATFGQEIDAIVRFAKQAIA------LHMPTENELADGAKDNRPHVA 491

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +L R +   P              ++ +   +  L +   IKD++AL   +    D  + 
Sbjct: 492 LLFRSKTQMPAYEDALE----QAGLTTLVVGQAALLERPEIKDILALLHVVCDHTDSAAL 547

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYI-------------------QKFANCGI 478
           + +L +P F  S DD+  +        T   Y                    +       
Sbjct: 548 MRLLATPRFGLSADDLQALAGIAERLNTAQRYRALVSAGIVEADANPSDADIRATVRAYR 607

Query: 479 SKFQHVIKYIHELIH------------------------------IAQFCSPHDFFTLIL 508
            +  + +  I  L+                                       +     +
Sbjct: 608 DQVPNAVFLIDVLLRGDLRHLVDGVLSRTGAASVIHAGRVIQQVQRTAGHPLPEVVRTAI 667

Query: 509 GAKKGRQQFI-----------SRFGNEVIDVLDEFLNFTLRNEQN----SYSSLQELISE 553
            A       +           +R  +     LD  L+      Q        SL+  IS 
Sbjct: 668 TALGLDIDLLLAERMRHPDAGNRATSHAASSLDAMLSLVDTYLQEIAAQGTPSLRAFISW 727

Query: 554 LEQ--YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           ++                 +V +MTVH +KGLE   V +V      F       + +   
Sbjct: 728 VDSLRDASDDNATAPDTPVDVVLMTVHQSKGLEWDAVAVVGMRDGTFPSSQGDHLSVKTD 787

Query: 612 LNDDPGIPI 620
            +   G   
Sbjct: 788 EDHPGGRRD 796



 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 86/324 (26%), Gaps = 62/324 (19%)

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
               ++        +   +      ++  + +    ++    +                 R
Sbjct: 1051 ADESATPSPETGNSLLRLAKLLVADEHLMPEPDAADAGESQDAFDEAVRAKGERILAAGR 1110

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
            +           + ++        +  P     S                      G   
Sbjct: 1111 QNVTSLQARAGSMGERDSRAYWRGLVRPIPHVASP-----------------AAQLGTRF 1153

Query: 787  HKLLQVIFTLPEH---------KRKNFITSYCTKNAKLWPAK----------------EY 821
            H   +                        S     A +   +                + 
Sbjct: 1154 HAWAERFIMADADVDGIGGTEGAAGMAAQSRAELIALIGDTQVDADNGGVQSQDAQLRDE 1213

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-----ISQQ 876
            + L     RL+ +P         +++E  +   +       I++G++D +       + +
Sbjct: 1214 RKLAAWQRRLVASPWAKR---RPAWAERQLVVDMPQL--GTIVNGKLDAVFFGGLDETDE 1268

Query: 877  --NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEP-- 930
                 + ++KT    P++ + I    +AQL +Y  +L      P  ++   L YVSEP  
Sbjct: 1269 TKRYTVVDWKTG-VKPRKPDEIKEK-LAQLDLYRLLLAAMEGVPLDAIDACLYYVSEPHE 1326

Query: 931  --KVFIIPQNKLNKAFAEISTKIP 952
              +    P     +  AE+S  IP
Sbjct: 1327 ADRELDAPDKTEEEILAELSYGIP 1350


>gi|87300614|ref|ZP_01083456.1| ATP-depentend DNA helicase [Synechococcus sp. WH 5701]
 gi|87284485|gb|EAQ76437.1| ATP-depentend DNA helicase [Synechococcus sp. WH 5701]
          Length = 602

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 93/600 (15%), Positives = 168/600 (28%), Gaps = 121/600 (20%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            L +K+        ++ +R   +K  +           L   Y     K   LDF  LI 
Sbjct: 110 PLIDKMLAECSNPEELAERLGEHKHKE-------FLSQLFNAYRSKLIKGNHLDFASLIG 162

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++R     I  +  +   +I +DE QDT+  Q+ ++ SL  +            
Sbjct: 163 MAAQLLEERPA---IARQFQRVYRYICVDEFQDTNKTQFRLLCSLVPE---------ERP 210

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            LF V D+ Q IY ++GA PKR+   +               I++LP ++R    ++ + 
Sbjct: 211 NLFVVADDDQLIYQWNGANPKRLQELQNRFS---------VEIVQLPENYRCPPAVIELA 261

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +     +    S        H+ S       V  +                       
Sbjct: 262 NNLIIHNLDR---SAGKERLRAHKVSTADTHLRVFYF----------------------- 295

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                         +   +             K         +VL R +K    +     
Sbjct: 296 -----GDFRQEVEWVVDELK------------KTPPDSRNSTVVLGRSKK----LLDAVI 334

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK--SPLFNFSEDD 452
                       + R        +  L A  R   +++D      + K    L   +   
Sbjct: 335 TECKQQGFPAYISIRKSQFISAPVTWLHAALRLANARQDREQLRRVCKAFFSLEGNNIRV 394

Query: 453 IFKICTQRHETETVYEYIQKFANCGIS---KFQHVIK-----YIHELIHIAQFCSPHDFF 504
              + T   +         + A    +     +  ++      +  L H     S   + 
Sbjct: 395 EDVVATSSFQGGDYLRGWLEAALDQQTVSVATRGFLEHMKNTLLERLNHWLFIDSAFRWL 454

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             I             +  E  DV        ++       SL  L+ E +         
Sbjct: 455 DAIQNQPAATDNAFDEYQVE-KDVWFLLQQEVIQQYGKDEVSLHSLLQEFDLRSKE---- 509

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                + VR MT+H++KGLE   V+L+                                 
Sbjct: 510 APPPKDAVRCMTIHSSKGLEFKRVYLLGLVEDQLPS------------------------ 545

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                   +   K        E  R  +V +TRA ++LI+          K+  R   +M
Sbjct: 546 -------WAARKKGDDSFEMSEERRNCFVAITRAEEELILSYSDRYFGYPKTPSRFLTEM 598


>gi|293189191|ref|ZP_06607915.1| putative ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
 gi|292821863|gb|EFF80798.1| putative ATP-dependent DNA helicase [Actinomyces odontolyticus F0309]
          Length = 1078

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 102/970 (10%), Positives = 256/970 (26%), Gaps = 90/970 (9%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            ++   L+ + +   +                +  +        T   +     +  +   
Sbjct: 80   RSALILAPDRTRADVLTPRAQALGPDAVRPVRTPASFAYQVVATWRTQRDVPLEGVELVT 139

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--RDRFNTYKM 119
               +  +L+    +      ++I  Q   +  P  + +L+       +        +   
Sbjct: 140  GAAQDQMLAEALESVDAPWPEDIGPQ--MRAMPAFRGELRNLVARAGEAGMDASSLSEAG 197

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNC------VLDFEDLIINTNDLLK--KRDVSAWIRY 171
             +        A  + A  EE  +++        +D   +     DL+   ++D       
Sbjct: 198  ARFGRPEWQGAGAIVAALEEGPERSPEYPRTLRVDLSRIQALAADLIAAWEQDAPKRGVQ 257

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                  + +++D++QD +     ++R+             +   + A  D   ++  + G
Sbjct: 258  APCPVPDVVIVDDLQDCTPSTLRLLRAC----------RDAGARIVAFSDSDVAVAGYRG 307

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             EP    R            G    + ++             V ++          S   
Sbjct: 308  GEPHLDRRLASALGVEIAELG---QVYDMSR----------AVRELARQACARIAQSGSP 354

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   +    +   V       SQ  +       S   +      +    + +  +  
Sbjct: 355  ARREAGVADDAPKGALVTHLGATPSQMGALIARALRSHHLHDGIDFSDQVVIVRSSSMVA 414

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILV------LVRKRKDTPLITFLTRFLKNDYKISVV 405
              S  +    +   G  R               LV     T       R    +  +   
Sbjct: 415  ETSRYLARGGVPVAGGGRAFDFATQPTTRLLLDLVTMPTGTSDTDVAQRRELAERLLPSP 474

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                           +  L R + +     +     +S     +  D+            
Sbjct: 475  LV-------RADALAIHRLLRRLNAARAQAAEEAGGESAPIPLTAADLVSDPQTWRPAIE 527

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS--PHDFFTLILGAKKGRQQFISR--- 520
              E          +     ++    L  +    S  P +    +  A     ++ SR   
Sbjct: 528  QAEQAGGKRARAAAMLARPLETAARLWELGMSGSVRPQERLWSLWEASGVASEWRSRAIA 587

Query: 521  ------FGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYP--PTIKRAHSANHNE 571
                  + ++ +D +   L      EQ + + S     SEL                   
Sbjct: 588  SDDSSGWYDDQLDAVVALLRVADVWEQRNPAGSAVGFASELLAGSVPIDTISRVGVRPGG 647

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            V ++T   A G    VV L       + +  ++   +   L  D G          R  +
Sbjct: 648  VEVLTPAQAMGRHWQVVVLAGLQDGAWPNLRLRDRILRADLLADVGAGRVAVGEDGREEL 707

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            +       +++  ++  RL    +TR+   +       + +   S        +  +   
Sbjct: 708  IDSTR-AARRAVLDDEYRLFVAAVTRSRSIVH-AGAVRSEDAAPSVFFDLVAYLAGTHRE 765

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE-----------ETIKQLMDEQKIP 740
            ++ V    +   ++    IA   +     + P + +           E I      + + 
Sbjct: 766  NDIVPVDPVEAPLSLSGHIADLRARAANSDEPADAQLAATLLALMAREGIASAQPHRWLG 825

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-------DNQTFNRGLIIHKLLQVI 793
                     D     +L+PS  +      L   L+        N   + G ++H + +  
Sbjct: 826  AGGTPTSAQDYRGQIVLSPSQFERALACPLRWFLTTIGADAPSNAAASLGTLVHAVAEEH 885

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                  +    + +   +          +        ++ N     +       EV+V  
Sbjct: 886  PHGTPEELTEALEARIEELGYNLDTWAGRVADRHAREIVNN---LASYVVGVPGEVTVEQ 942

Query: 854  KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             ++   + + I GR+D++    + + + + KT          +      QL+ Y+  +  
Sbjct: 943  TVSAEVEGVTIRGRMDRLEQVDEGVRVTDLKTGK-SGYTKASVAEN--PQLAAYQMAM-- 997

Query: 914  SYPNKSLVCL 923
                + +   
Sbjct: 998  LASGEKVAGA 1007


>gi|302339977|ref|YP_003805183.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
 gi|301637162|gb|ADK82589.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293]
          Length = 1082

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/545 (16%), Positives = 152/545 (27%), Gaps = 162/545 (29%)

Query: 134  NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
               Y+   +++  LD++DL+     L +       I   + +   HI++DE QD + +Q+
Sbjct: 649  FHLYQGLLQRHNCLDYDDLLYLPLRLFEAHPD---IMDSVREGFRHIIVDEYQDINPVQY 705

Query: 194  EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            E++R LT                 AVGD  QSIY F G  P+ + R              
Sbjct: 706  ELLRILT-----------KGAEFCAVGDPNQSIYGFRGGSPEFIRRFAVDFSA------- 747

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               +  L  S+R    +L    ++                            G   L   
Sbjct: 748  -AKLFSLSRSYRCPDTVLKASSQL--------------------------LGGGAPLLAG 780

Query: 314  VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT-------DTIFSNG 366
                                 ++ + ++A+  A +IA  I    G          +   G
Sbjct: 781  PRPGVKI--------------AVRKTATAASEAEQIARDIEERSGGMGFFSLDSGVAGAG 826

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                I   DI VL R     P++         D++I         L      +  +   R
Sbjct: 827  SDGEIALSDIAVLCRTSMQMPILEKAF----TDHRIPFRTIRTDSLFSGEPYRTFLNWIR 882

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            F+                                 E  T++    +  +   +       
Sbjct: 883  FL------------------------------AYGERATLFSSDIERISRAATGAAEPPS 912

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
             +   +      +  +    I   +    ++ +  G+        F+             
Sbjct: 913  TLRAALECFSDSNLLEEKVDIEEVENELTRYWAPGGDA-----KAFVEA----------- 956

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                 S L            A    V IMT+H AKGLE  +VF+      +     +   
Sbjct: 957  -----SHLASGSDRY----DARFQAVSIMTIHAAKGLEFDLVFIPGCEDSIIPCTLVG-- 1005

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                             K    EE  RLLYV MTRA  +L++  
Sbjct: 1006 --------------------------------EKSEDVEEERRLLYVAMTRARQELLLSY 1033

Query: 667  HSNTS 671
             +  +
Sbjct: 1034 AAKRT 1038


>gi|315503784|ref|YP_004082671.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315410403|gb|ADU08520.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 707

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 88/662 (13%), Positives = 180/662 (27%), Gaps = 167/662 (25%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQ---ASQTQCIEERFSLLSSFFLTQKFTPQ 81
               +++   +++    G       A  L+Q    +           L    +       
Sbjct: 68  ARAAAEMRSRLTVLGVQGVQARTFHAAALRQVRYFAPRLLAGRAMPELLDSKVRVVTLAA 127

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEF-IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
             +  +     + DL  +++ ++              K  + T         +   YE  
Sbjct: 128 AKVGLRADRAAARDLSAEIEWAKSSLVEPGEYVVAAAKALRETPYEPARVADVFDAYERL 187

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           K+ N V+DFED++      +++      +  ++  +  H ++DE QD + +Q  ++ +  
Sbjct: 188 KRGNGVIDFEDMLRAAVWGIEEHPD---VAEQVRNQYRHFVVDEYQDVNPLQQRLLEAWL 244

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                          L  VGD  Q+IYSF GA    ++   R+         +  +++ L
Sbjct: 245 G----------GRDDLTVVGDASQTIYSFTGATSSYLVDFPRL--------HRGATVVRL 286

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              +RST  ++ + + V S                            ++L  Q     + 
Sbjct: 287 VRDYRSTPQVVGLANAVISQARG------------------TEARLRLELHGQRRPGPEP 328

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +          + D   +       A  +A     ++   T           A++I VL 
Sbjct: 329 E-------LRIFTDEPAE-------ANAVAARCRALVAGGTP----------AREIAVLF 364

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +               +  V        +   ++  M   R      D       
Sbjct: 365 RTNAQSEAYEKALSE----AGVPYVLQGAERFFERPEVRQAMIALRAATRSAD------- 413

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
             +PL     + +  +                 A       +   + +  L+ +A+  + 
Sbjct: 414 AGTPLPAAVVEALTAVGWAPD------------APPPGGAARERWEALAALVQLAEEYAA 461

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                                                         L     EL +    
Sbjct: 462 Q---------------------------------------AEEEPGLTGFTEELARRAAQ 482

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                      + + ++H+AKGLE   VFLV                             
Sbjct: 483 QHVPTVEG---LTLASLHSAKGLEWDAVFLVGLAEGTLP--------------------- 518

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                   EE  RLLYVG+TRA + L +   +  S   ++ + +
Sbjct: 519 --------------TTYAKTMEQVEEERRLLYVGITRAREWLWLSYATARSPGGRARRPS 564

Query: 681 WY 682
            +
Sbjct: 565 RF 566


>gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 864

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 90/548 (16%), Positives = 170/548 (31%), Gaps = 95/548 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E I +DL P    Q + I  + +L  E     I      +         E+  +
Sbjct: 71  AAREMKERIIQDLGPRA--QNTTIKTFHALCAEI--IRIESDILGIPADFNIFDEEDAKT 126

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK--------------SQDEFIKIRDR 113
           +L+    T+ F        + IN     +                     QD+  ++   
Sbjct: 127 ILNDVIKTKDFQIASTDAKRFINFMMNYIARVKAANVDVEKINVNNPLGEQDKMDQLFRE 186

Query: 114 FNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
             +   FK+T        K +   Y     +N  LDF DLI   + L  +R  +     +
Sbjct: 187 RLSEAYFKNTSKDQDFKHKEIFREYNRLLSENHALDFSDLIFYVDRLFSERTDAKT---R 243

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
              +   + +DEVQDTS  ++ +I  L++            + L   GD +Q++Y + G+
Sbjct: 244 WQDKFEFVQVDEVQDTSYQEYGIISELSQ----------KHKNLSLFGDIQQTVYEWRGS 293

Query: 233 EPK-RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            P   +   K              + I L +++RST +IL     V              
Sbjct: 294 APNQVMENFKSEF--------SPVTEINLNVNYRSTRNILRACYCV-------------- 331

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   +   +  ++ +W +   + +                + + +        IA 
Sbjct: 332 --------ASKYKGDSLDIWPEAQVEGEKTG-------------IIKGAHRQQEVELIAD 370

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I  ++              + +DI +L R       +  L        +I     D + 
Sbjct: 371 QIFRLVREQ---------GFKFQDIALLTRTN----QVNHLISQELAKNQIPHFTVDSYK 417

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-TETVYEYI 470
                 IKD MA  R + ++ D  S   +L+ P     E  I  +     +    + ++ 
Sbjct: 418 FFRRSEIKDAMAYLRLLFNKHDSNSLRRILQKPARGIGEKTIETLLNIPSDVGLKLVDFA 477

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                     F  ++    +           D  T  L   K     ++        V+D
Sbjct: 478 NTSTLKYRDPFARLVNKFEQ-----NKLVVFDVETTGLDTTKDEIIELAALKAGKDGVVD 532

Query: 531 EFLNFTLR 538
           EF  +   
Sbjct: 533 EFHEYLRN 540



 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 101/339 (29%), Gaps = 48/339 (14%)

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLV--RKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
           ++                 D   LV      D  ++    + L N   + + G D   ++
Sbjct: 558 LLEQGKPPEKSLASFTNFIDDCDLVGHNVNYDITMVENQCKKLLNQ-DLELHGYDTVDIS 616

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
                +        +       S            + + +  +  +        E  +++
Sbjct: 617 RRYFPRLEKYNLESLCEDLQISSKPTHRAMDDVEATFELLQILLEKIKPGI---EKRKEY 673

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
            N    KF ++   ++          P +  + ++        +      + I+ L E +
Sbjct: 674 VNSYGDKFANLAIALNSWRRKTLTMRPPELLSHVIQESGLADYWKKDK--QRINNLKELV 731

Query: 534 NFTLRNEQNSYS---SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           +     +  + S   SL+ ++  +     + +     + ++V ++TVH AKGLE   VF+
Sbjct: 732 SIFDYFDDETLSPNMSLKNILEYVSLGSDSDRHVL--DQDKVALLTVHQAKGLEFDAVFI 789

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F +   KK+                                      +E +RL
Sbjct: 790 ASADDNNFPYFRNKKLG-----------------------------------NIDEEHRL 814

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
            YV MTRA   L I   S   +        +  ++   +
Sbjct: 815 FYVAMTRAKQALFISWASKDEHSFNQAISRFAKLIPKKY 853


>gi|217968983|ref|YP_002354217.1| UvrD/REP helicase [Thauera sp. MZ1T]
 gi|217506310|gb|ACK53321.1| UvrD/REP helicase [Thauera sp. MZ1T]
          Length = 745

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 99/758 (13%), Positives = 200/758 (26%), Gaps = 128/758 (16%)

Query: 3   NRFGLSLNESYELIYKDLW-PLPYFQVSDINKY-------VSLSMETGNPTILKKAQTLQ 54
            R    +      I        P    +++            L  +      L    ++ 
Sbjct: 94  RRAADEMGRRVRRILAQAAADRPGLARAELQWAGTFHAIGARLLRDHAGRIGLDPGFSIH 153

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ---EINKKSPDLKEKLKKSQDEFIKIR 111
               +  +            T++  PQK         +      L E L+ S     +  
Sbjct: 154 DREDSADLMNLVRHELGLSATKQRFPQKGTCLAIYSAVVNTRAALAEVLQASFPWCAQWE 213

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           D                    L   Y EAK+   VLD++DL++    ++ + ++ A I  
Sbjct: 214 DELK----------------RLFRAYVEAKQAQQVLDYDDLLLYWAQMVGEAELGAEI-- 255

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                 +H+L+DE QDT+ +Q  ++ ++              R L  VGD+ QSIY+F G
Sbjct: 256 --GGLFDHVLVDEYQDTNALQAAILLAM----------KPDGRGLTVVGDDAQSIYAFRG 303

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  + +L      +           ++ L  ++RST  IL   + V ++       +  S
Sbjct: 304 ATVRNILDFPAAFE-------PPARVVTLERNYRSTQPILDAANAVIALAAERFAKNLWS 356

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                 R                                     L      +  A  +  
Sbjct: 357 ERASAQRP-----------------------------------RLVTVKDEAAQADFVVD 381

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           ++                 ++ K   VL R    +  +            I  V      
Sbjct: 382 SVLARREEG----------LKLKQQAVLFRASAHSARLELEL----TRRNIPFVKYGGLR 427

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEY 469
             +   +KD++AL R+  +  D ++    ++  L         ++           V   
Sbjct: 428 FLEAAHVKDVLALLRWAENPRDRIAGFRAIQ-LLAGIGPRTAGRVLDNVCSAPPGCVLLA 486

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
            Q         +      +  L    +  +                +     G     + 
Sbjct: 487 EQPVPEAARPGWLEFATLVDRLSGREEASTAAFAPGGAPARTTAPVRAEGLAGGARGGLP 546

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                          +  +      E   P +         +++ +    A        F
Sbjct: 547 W-------------PTDFELACRWYEAQMPRLYDDFQVRVLDIQQLARIAATSPSRQR-F 592

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR---------NNIVSDLIKHLK 640
           L +      S    +    +   +      I   + +           +  +   +    
Sbjct: 593 LTELTLDPPSATSAEAGMPLLDEDYLILSTIHSAKGQEWNAVSVLNVVDGCIPSDVATRD 652

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            +  EE  RLLYV MTRA D L +         +++            +    R    +L
Sbjct: 653 SAEIEEERRLLYVAMTRAKDALDLIVPQRFHVTQQTGLGD-----RHVYAGRSRFIPNRL 707

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                +  W            +     +   ++ D  +
Sbjct: 708 LGHFEQMSWPLPAPELQGSPASRQAAIDLAAKMRDMWR 745


>gi|118475031|ref|YP_892129.1| UvrD/REP helicase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414257|gb|ABK82677.1| UvrD/REP helicase [Campylobacter fetus subsp. fetus 82-40]
          Length = 679

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 93/576 (16%), Positives = 182/576 (31%), Gaps = 98/576 (17%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   +EE K +    DF DL+I   + LKK    A +        + IL+DE QD
Sbjct: 169 EVYEDILREFEEQKSRFNYADFNDLLIKMRNELKK---GAKVF------YDEILVDEYQD 219

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I S             + ++LF VGD  QSIY+F+GA    +    +     
Sbjct: 220 TNSLQGSLIDSF------------NAKSLFCVGDFDQSIYAFNGANIDIIGSFTQRY--- 264

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   +  L +++RS+A IL++ +KV +            +     +S     +  
Sbjct: 265 -----KDAKVYSLNVNYRSSAKILSLANKVIAQNPRLYPKELTVSRIGNFKS--PSLLIY 317

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +L+ Q  +  +   N   +            S+  +        IS        F   +
Sbjct: 318 DELFLQYENISEIILNSHYKKDDIAIIFRNNSSADGLEVALKEQGISCKRKGGVSFFESR 377

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
           +       I + +  +     I              V       + D L      ++ + 
Sbjct: 378 EIKALIDLIGIYINPKDIMAFIHVFEYARG------VGNASAKEIFDTLLALGDRSIVKG 431

Query: 428 ILSQEDDLS-FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH--- 483
           +L+ +  +  F    K+      +D    + + R  +  + +   +      S       
Sbjct: 432 LLNPDKSVKVFERSKKNHQLGLFDDFSEFMDSARFTSLGLSKEFMENPVLNYSNLNTNGA 491

Query: 484 --VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV----IDVLDE-FLNFT 536
             + +    L+ I    + ++    ++         +     +        +D    +  
Sbjct: 492 IFLYELYKLLMQIQGKTNSYEVVNSVIN-SGVYSIIVDFLATKRATLKNGNVDANLKDEA 550

Query: 537 LRNEQNSYSSLQE----------LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                     L E            + L      +     +    V ++TVH +KGLE  
Sbjct: 551 KDRIYAKSKVLLEMSKRHNYCDVFYNFLTLGRTEM-----SEGEGVSLLTVHASKGLEFS 605

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           +VF+VD     F +                                  L       + EE
Sbjct: 606 LVFVVDLAQNRFPN----------------------------------LKLMGMGGSLEE 631

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             RL YV +TRA D+L +         K   + + +
Sbjct: 632 ERRLFYVAVTRAKDELYLSYAKYDKIRKIDYKPSCF 667


>gi|307328519|ref|ZP_07607693.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
 gi|306885787|gb|EFN16799.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
          Length = 764

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/570 (15%), Positives = 166/570 (29%), Gaps = 155/570 (27%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
             K  +           + A YE+ K+   V+DFED+++ T  +L++      I  ++ +
Sbjct: 181 AAKSGREAPRDAAEIGRIYATYEQLKRDRGVIDFEDVLLLTVGVLQE---RHDIADQVRR 237

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           +  H ++DE QD S +Q  ++     D             L  VGD  Q+IYSF GA P 
Sbjct: 238 QYQHFVVDEYQDVSPLQQRLLELWLGDRDS----------LCVVGDASQTIYSFTGATPD 287

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +L  +              ++++L   +RST  ++ + + + S           +   +
Sbjct: 288 HLLDFRTR--------HPGATVVKLIRDYRSTPQVVHLANGLLSQARGR-----AAEHRL 334

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
              S R      V                    + +Y D   +       A   A  I  
Sbjct: 335 ELVSQREAGPDPV--------------------YAAYADEPAE-------AEGTARRIRE 367

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           +I        G    + A  I VL R    + L          D ++           + 
Sbjct: 368 LITPVEQGGGG----VPASQIAVLYRVNAQSELYEQAL----ADAQVPYQLRGAERFFER 419

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY-IQKFA 474
             +++   L R                      ++  +            +         
Sbjct: 420 PEVREAGLLLRGAA---------------RGRSTDPALADADIPSQVRAVLGTRGWTPEP 464

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
             G    +   + +  L+ +A+  +                    R G  + D++ E   
Sbjct: 465 PAGSGAVRDRWESLAALVRLAEDFAGS------------------RPGATLSDLVAELDE 506

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                                         H+     V + ++H AKGLE   VFLV   
Sbjct: 507 RAAA-------------------------QHAPTVEGVTLASLHAAKGLEWDAVFLVGLT 541

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +                                     +         EE  RLLYVG
Sbjct: 542 EGMVP-----------------------------------ITYAKTDQQIEEERRLLYVG 566

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
           +TRA   L +    + +   ++++R    +
Sbjct: 567 VTRARHHLTLSWALSRAPGGRASRRPTRFL 596


>gi|289422635|ref|ZP_06424477.1| putative helicase [Peptostreptococcus anaerobius 653-L]
 gi|289156986|gb|EFD05609.1| putative helicase [Peptostreptococcus anaerobius 653-L]
          Length = 763

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 95/585 (16%), Positives = 180/585 (30%), Gaps = 81/585 (13%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            +T+   +   Y+E  + N  +D++D+++    +L+     + +     +   ++  DE 
Sbjct: 195 IMTIISPIFNLYQEKLRSNAYIDYDDILVMAYKILESD---SEVAAYYQERYAYVFEDEC 251

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTH---SSPRTLFAVGDEKQSI-YSFHGAEPKRVLREK 241
           QD++ IQ ++I  ++ +     + +   S+   L  VGD  QSI  +F G+ PK  +   
Sbjct: 252 QDSNEIQGKIIEIISRNVSRSISENDMVSAKMNLVRVGDVNQSITTTFAGSNPKFFVDFC 311

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +                 + ++ RS+ DI+   +K+                 I      
Sbjct: 312 KR----------ADKSYTMNMAGRSSKDIINTANKLVE---------------IVKSDMT 346

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
               G ++       + D        + +   +S   +     +A  +  TI        
Sbjct: 347 KDYYGGLEEIYIEEVEKDKGYKENPVTRSYSINSKSLDDFNQEMA-YVVSTIK------- 398

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                 +       I VL     D   +            I           +   I  +
Sbjct: 399 ----YTREKFPNYSIGVLYFSNFDVNDLAKKLDSE----DIPYEKIGNDSQENMKIIYKI 450

Query: 422 MALGRFILSQED-DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY---EYIQKFANCG 477
             +  FI+   D D+    + ++ +      ++  I  +R E        E         
Sbjct: 451 KQVVDFIIDPSDYDIFKQMLFEAYIDRADTYELSDIEHERLEKLFDKIDTERYFYDDLYF 510

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLI-------------LGAKKGRQQFISRFGNE 524
                   + +  LI         +    I             L    G    IS     
Sbjct: 511 DDLATRAKQLLENLIEKPFVKKLAEDRARIRSVLEYSKVDIYGLIKLIGDSLNISSQEKS 570

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQ--------ELISELEQYPPTIKRAHSANHNEVRIMT 576
           +ID L  +L+     E    + +          +   L          H      + I T
Sbjct: 571 LIDYLAFYLSKLKTYESADLNRISIAMAPRNTRIFETLVA-SIYDIGEHEVEAGSISIST 629

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL- 635
           +H +KG+E  +V +    S  F         I      +         +K  ++IV+   
Sbjct: 630 MHKSKGMEWDLVIVCGVSSNDFPSSVNDYFRIDRKYLREGFKYPEAFVNKEIDDIVNKSC 689

Query: 636 ------IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                  K LK     E  RLLYV +TRA   L+I    +  NE 
Sbjct: 690 KKIGYYEKELKTEIIGERTRLLYVAITRAKRGLVILNSRSKFNES 734


>gi|23005408|ref|ZP_00048241.1| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 339

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/399 (15%), Positives = 125/399 (31%), Gaps = 79/399 (19%)

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           ++ Q+  +R L +          + + +  VGD+ QSIY + GAE   +LR +       
Sbjct: 4   NVAQYLWLRLLAQ----------ARKNVACVGDDDQSIYGWRGAEVDNILRFEHDFP--- 50

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  +++ L  ++RST  IL     + +  E   G +                    
Sbjct: 51  -----GATVVRLERNYRSTGHILAAASGLIARNEGRLGKTL------------------- 86

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                           +  + T  +DS  +       AR+IA +I ++            
Sbjct: 87  ---------RTEDAAGEPVTVTGAWDSEEE-------ARQIAESIESLQRKGHPL----- 125

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 +I VLVR       I            +           +   I+D +A  R  
Sbjct: 126 -----SEIAVLVRISAQMREIEDRF----VQVGLPYRVIGGPRFYERAEIRDALAYLRVT 176

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------F 481
           ++  DDL+F  +  +P     +  +  +    R +   +    +K       K       
Sbjct: 177 MNGADDLAFERIFNTPKRGLGDATLQTLHAYARADRIPLLAAARKLIETDELKPRARSML 236

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           + +++       + +     +    IL      + +      +    L+    F    E+
Sbjct: 237 RGLVESFSRWTRLVEAKPHPEVAQTILEESGYTEMWQKDRSADAAGRLENLKEFVRSMEE 296

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                  ++   LE     ++ + +   + V +MT+H  
Sbjct: 297 -----FPDMAGFLEHVSLVMEASEAEGADRVSLMTIHAG 330


>gi|326383314|ref|ZP_08205002.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
 gi|326198064|gb|EGD55250.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395]
          Length = 679

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 92/715 (12%), Positives = 186/715 (26%), Gaps = 171/715 (23%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
                         ++  +      +            + L+        + R+ LL   
Sbjct: 66  AVTFTARAAAEMRERLESLGVAGPGNRIAAQTFHAAAMRQLRYFWPMAMGDMRWELLEHK 125

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE-FIKIRDRFNTYKMFKSTLASLTLAK 131
           F       ++  +         DL  +++ ++       +      +  +          
Sbjct: 126 FRMVGRVARELGLDVADRDLLRDLSSEIEWAKSSGIGPGQYPDAAQRSHRDLPTDPRTVS 185

Query: 132 YLNAHYEEAKKKNC---VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            + A YE AK       +LDFED++  T  +L+       I  +        ++DE QD 
Sbjct: 186 QVFAAYEAAKVAPNGDRLLDFEDMLTFTTTILRSDPS---IAEEFRSRYRSFVVDEYQDV 242

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ +++ +                 L  VGD  Q+IYSF GA P  +L   R      
Sbjct: 243 TPIQQDLLDAWLG----------GRDDLTVVGDANQTIYSFTGATPSYLLDFTRRYP--- 289

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  +++ L   +RST +++T+ +               + + ++    R      V
Sbjct: 290 -----DATLVRLQRDYRSTPEVVTLANAAIGRARGR-----IAGSRLKLVGQRPAGPEPV 339

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                               +  Y D + +          +   I ++I +         
Sbjct: 340 --------------------FAGYDDEISEVVG-------VVARIRSLIRSG-------- 364

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             + A +I VL R    +               I           D   I          
Sbjct: 365 --VPASEIAVLYRVNAQSEAYEEALSE----AGIDYQVRGAQSFFDRPEI---------- 408

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                 ++ +  L S               +           +       +++Q +++ +
Sbjct: 409 ------VAGMRRLTSLAGGPPPPMPPVDAVRHGLHSVGLTEAEPAGANARARWQQLLRLM 462

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
                                                 ++++E  +     +        
Sbjct: 463 --------------------------------------EIVEEIASQAPELD-------- 476

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                + +     +  H+     V + ++H AKGLE   VFL              K   
Sbjct: 477 -FAGLVSKLDERSRMRHAPVGGGVTLSSMHAAKGLEWDAVFLTGLHEGSMPLGRASKTT- 534

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH- 667
                                               EE  RL YVG+TRA + L +    
Sbjct: 535 ---------------------------------DDVEEERRLFYVGITRAREHLHLSWSL 561

Query: 668 --SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                   K+   R    +V  +  + E + +    +        A+       E
Sbjct: 562 SRGEGRGAKRRRSRFIDALVPKAEVDFEPLPERTDPDPDVLAALTAWRKEFAEAE 616


>gi|237786047|ref|YP_002906752.1| putative ATP-dependent DNA helicase II [Corynebacterium
            kroppenstedtii DSM 44385]
 gi|237758959|gb|ACR18209.1| putative ATP-dependent DNA helicase II [Corynebacterium
            kroppenstedtii DSM 44385]
          Length = 1175

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 105/993 (10%), Positives = 251/993 (25%), Gaps = 154/993 (15%)

Query: 20   LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             + +   Q +     ++  + TG          L++    +  +     L S   T  F 
Sbjct: 123  AFAVLRHQAAHTPGALAPRLLTGAEHDSLVRDMLRE-HSERGADIWPERLRSALTTLGF- 180

Query: 80   PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
                         +  L++ L +  +      +     +         + A      Y  
Sbjct: 181  -------------ARQLRDFLLRVAERGCTSEELRQYGQGCSRDE--WSAAADFYDEYRA 225

Query: 140  --AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
                  +  L+  +L+    D L   +  A          + ILID+ Q    +  E++ 
Sbjct: 226  TARLMGSNALNASELVRAAVDALDSDEELAESLN-----FDVILIDDSQFFDPLSSELVE 280

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                         S  R      ++ +S++ F G       +  +             + 
Sbjct: 281  RF----------RSRARLTLVASEQSESVFRFRGGSTTYADKLAK-----------TENT 319

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQGLSEDST---TTIRHRSSRIGQVGTVQLWEQV 314
            I L  + R    +  +  +V     + + L              S    + G   +   V
Sbjct: 320  IHLSGTKRLAPPVAELAARVADATRHPESLRWAKEIRHQDAERLSDHSAEFGEADVRVLV 379

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASIL--ARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                +      +       D++  +  A I+    + A     ++      ++    ++ 
Sbjct: 380  SPSAEVAAVVDRVRRAHIVDNVQWKDIAVIVRSKSQAAPMRRGLLAAGVPVADDPTEIVL 439

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA-LGRFILSQ 431
             +  +V    +     +       + +  +         +T    ++ L     +     
Sbjct: 440  LEQPMVRAILQAVRCAVGEDLTNDELERLVLSPIGGGDPITFRCILRGLRRGFMKVEFDN 499

Query: 432  EDDLSFVCMLKS---PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                + +  + +     +  S                + +  +            V   I
Sbjct: 500  PVRAAELTAITTTDDEDYGRSVFRAIDALRFILLGGELIDLTENLTAREKDLIMRVRSVI 559

Query: 489  HELIHIAQF-CSPHDFFTLILGAKKGRQQFISRF------GNEVIDVLDE---FLNFTLR 538
                       S       +  A    +   ++       G+     LD      +    
Sbjct: 560  QAGQEAFYGGESVEAILWAVWDAAGLSEALANQSLRGGAVGSMADQHLDAVMSLFDAAGD 619

Query: 539  N-EQNSYSSLQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGS 595
              E++ +S++   +  + +                 V +   H   G E   V +     
Sbjct: 620  YVERHPHSTITSFVRFIVEQELPTGARDRRGPVREAVDVSPAHATVGKEWDTVVVAGLQE 679

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             V+                D       P             +        E  RL  V +
Sbjct: 680  DVWPSLSETGTIFRQEEFVDFLDRGVEPGRPEN-------RRGRYDDRLAEERRLFLVAV 732

Query: 656  TRASDQLIICKHSN---------------------------------------------- 669
            TRA   L++                                                   
Sbjct: 733  TRARRSLLVTAVGPHVSDDGTVDSDADIRSRFLEELAGDQALASSHGEPDAESSDSADLR 792

Query: 670  ----TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                +   +  +  +                  +L   +  ++   +E      +   L 
Sbjct: 793  ALTSSGGSQTQSPLSVLPECEFPRVLSPDSLIAELRRVVESEDSSGHERHHAARQLARLA 852

Query: 726  REE----------TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                         T         + +   +   +D    Y ++PS ++   +  LE+ L 
Sbjct: 853  LAAGDAPSRESVITAANPDHWWGVQELSTTKSLHDPETAYFISPSQVERYLECPLEAFLQ 912

Query: 776  DNQTFNRG-------LIIHKLLQVIFT-LPEHKRKNFITSYCTKNAKLWP---AKEYKNL 824
              +T  R         + H   + +   + E   ++   +   +           +    
Sbjct: 913  SVETAGRDTTATLLGTLTHMAAEAMERGVDEGDVRDVFLATVPRLLGTLTWKKHDQIDKW 972

Query: 825  LLSITRLLENPMMT-TAMSCDSYSEVSVSGKI--NCPKKDIIISGRIDQISISQ-QNIFI 880
                 RL+E   +   A++  +  E  +  +I       D+ + G+ID++ IS     +I
Sbjct: 973  TDMFDRLVEKLHLRYAAVTGHAEVEQVIESRIGQTSSGDDVYVRGKIDRLEISDVGKYYI 1032

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             ++KT + V + I   P     QL  Y+  +  
Sbjct: 1033 IDFKTGNQVAKNIPDNP-----QLKTYQTAVAK 1060


>gi|325295694|ref|YP_004282208.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325066142|gb|ADY74149.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 726

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/582 (15%), Positives = 188/582 (32%), Gaps = 86/582 (14%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           +      L   L     + + +  +    K + +      +A  L   Y +   K   +D
Sbjct: 174 LLHDRLSLLSFLFDFIPQNLILSKKLVKEKGYDNNSRVRLIAGKLYRKYTDLLAKENYID 233

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQ-----EINHILIDEVQDTSLIQWEVIRSLTEDF 203
           +  +       L      + +  + D       I +IL+DE QDT+ +  ++  +L +  
Sbjct: 234 YTHIEWLFLQFLNSNSEESKLFIEGDGTEYFPGIRYILVDEYQDTNPLDEKIYFTLAK-- 291

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     + L  VGD+ QS+Y F GA     +  ++  +      G+K   +EL  +
Sbjct: 292 --------RSKNLTVVGDDNQSLYRFRGAVVDCFINFEKSCKDIL---GEKAVRVELLKN 340

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RS   I+  ++      +                            W+++  +     +
Sbjct: 341 YRSDKQIVAFINYFLKKHKEYSDYKSA--------------------WKKLSIEKKILFS 380

Query: 324 PQQESWTSYFDSLPQ-ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
              E + +  +S+ + E     LA +  Y +  +     I         +  D+++L+  
Sbjct: 381 SGIEVYKTTENSVIEIEGDEEELAEKCYYLVKELKSRGIIS--------KYSDVVLLLPS 432

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
            ++        R       I V       L     I  ++     IL +E ++       
Sbjct: 433 TRE-DKFAGEIRQTFEKKGIPVYNPRAKSLIYQKEIGVMLGALLNILPEESNIPN----- 486

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
                 S  +      +  E E+  E  +K      +     +  +     +  +     
Sbjct: 487 ------SLKETISFWKETFERESSEELKKKVKELSSTINPENLNILELFYQLLSYEPLKS 540

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
           F   IL +    +  +S+  +    +++E  +      +     L    ++L++      
Sbjct: 541 FKENILTSANLAR--LSQLISSFSQMVEERNSLISEFFRTFLFILSTKSADLQEV----- 593

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                  +   IMT+H +KGLE P+V + D      +     K+  M  L +        
Sbjct: 594 --KEVPQDMFPIMTIHQSKGLEFPIVIVGDLD----NISGDWKLGKMEELFERFLKNYTK 647

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
             S  RN +              +  R  YV  +RA   LII
Sbjct: 648 GFSWERNTL--------------DAVRKFYVAYSRAQYCLII 675


>gi|154148488|ref|YP_001406940.1| ATP-dependent DNA helicase UvrD [Campylobacter hominis ATCC
           BAA-381]
 gi|153804497|gb|ABS51504.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter hominis
           ATCC BAA-381]
          Length = 923

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 126/878 (14%), Positives = 250/878 (28%), Gaps = 198/878 (22%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           FL      +           + D   ++    +   K   ++       S          
Sbjct: 229 FLKITPFERGFDYGDYKKSYNKDETNRIDAMFECVKKALKKYFDDLEAYSKSGL----AG 284

Query: 133 LNAHYEEAK----KKNCVLDFEDLIINTNDLLKKRD--VSAWIRYKIDQEINHILIDEVQ 186
               Y +AK    KK   + F D+      +L       S  + +++D+ I H+LIDE Q
Sbjct: 285 FLETYRKAKHDVNKKLDSVSFADISSLAFYILCGEGKIDSDALYFRLDERITHLLIDEFQ 344

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT++ Q++++  L ++   G  T     + F VGD KQSIY                   
Sbjct: 345 DTNITQYQILLPLIDEIVSGLGTSLG--SFFYVGDIKQSIYR------------------ 384

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                            FR          ++F+  +N       +      +++      
Sbjct: 385 -----------------FRGGKK------EIFTDLKNRYEQIVYADE---LKNNYRSLPI 418

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V   ++                 S        +    + + I   +  +     I  N 
Sbjct: 419 LVDFVKEKFITKYENKFEAIAVQKSGGFVRVVSTEKDEIIKNIVNQVIWLKAHGEIEEN- 477

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    I +L  + K+   I       K D             T         AL R
Sbjct: 478 ---------IAILCWQNKEADTIKNALNDAKIDAN-----------TQSSVQISNYALVR 517

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            IL                         +     +    +     K            +K
Sbjct: 518 AILEF----------------IKFCIFDEKIYAENVKTILGFCADKIDINMKQSVPDTLK 561

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            I +++ I                            NE  + +  F       +      
Sbjct: 562 KICKILKI----------------------------NEADENILYFFEIANGYKNPVELI 593

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
             ++ +E+           S N N V+IMTVH +KGLE P V   D   +  +       
Sbjct: 594 FADIKTEI----------FSKNTNGVKIMTVHKSKGLEFPNVIFCDKLGKDRADCSDFLC 643

Query: 607 HIMPSLNDDPGIPIWIPQSK------SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                L +          S+      + +     L++ +++   +E    LYVGMTRA +
Sbjct: 644 EFNFDLFNGNNFNECWEVSQKIKCKENIDKNYGKLLEKVQELDSKEIINELYVGMTRAEN 703

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            L+I        +  SN  +++D +                      +    E     P 
Sbjct: 704 SLVII---KNKIDNNSNDISYFDKIL---------------------DIKDGEIGKFEPA 739

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
              + +++T                  +++      ++P       ++N  +  ++    
Sbjct: 740 KRKISKQKT-----------------YRSEKIILQTVSPQNEKKDDESN--ATYANLDKI 780

Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
             G  +H  L++      ++    I        +    + + +L   +  L EN      
Sbjct: 781 YFGEAVHYALEMSENFSVNEIDELINLTKNCYGQFLNNQNFTDLKNRLKFLFENKQFKEI 840

Query: 841 MSCD-SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
           +    S  E  +  K N   K      ++D +        I +YKT              
Sbjct: 841 LKDGESLKEQPL--KFNGKLK------QMDLLVRKDGEFCIVDYKTS-------CEFEEK 885

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYV--SEPKVFII 935
           +I Q++ Y+  +K  +    +   ++++     ++  +
Sbjct: 886 NINQVNGYKNAMKTLFGEYKISAFIVFLLKDCAQILEV 923


>gi|296451043|ref|ZP_06892785.1| probable helicase [Clostridium difficile NAP08]
 gi|296880604|ref|ZP_06904566.1| probable helicase [Clostridium difficile NAP07]
 gi|296260050|gb|EFH06903.1| probable helicase [Clostridium difficile NAP08]
 gi|296428558|gb|EFH14443.1| probable helicase [Clostridium difficile NAP07]
          Length = 742

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 105/667 (15%), Positives = 202/667 (30%), Gaps = 102/667 (15%)

Query: 45  TILKKAQTLQQASQTQCIEERF-----SLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKE 98
                A  LQ+         RF          +FL ++   + K I  +   +   +   
Sbjct: 112 EDFNIADDLQKNIILNECISRFRFEGGERAFRWFLKEQKDERWKEITLEAWERGFFEFAG 171

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
                  ++  I        + +     L +   +   Y+   K+N +LD++D++I    
Sbjct: 172 NAISEL-KYKGISPDKLEEILSRGQKGMLKIILPIYKLYDRKLKQNGLLDYDDILILAEK 230

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            L   +    +R K      +I  DE QD++ IQ  +I+ ++ +           R L  
Sbjct: 231 TLSLDEG---LRKKFQTRYKYIFEDECQDSNEIQGNIIKIISSE----------NRNLVR 277

Query: 219 VGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           VGD  QSI   F  ++PK                        + +S RS+ DIL + + +
Sbjct: 278 VGDINQSITGTFSSSDPKFFKEF----------INSADFCYRMDMSNRSSKDILDLANTL 327

Query: 278 -------FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
                  F   E    L +    T+ +                     + +       W 
Sbjct: 328 VEYVTKEFRQEECRHALEDMQIKTVPNGMGYKENP-------------NPEHYNINIKWY 374

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
             +    +++     AR +                G K     K I +LV   +    + 
Sbjct: 375 DSWKFEIEQT-----ARYV---------------KGIKNKYPDKSIGILVPFNEQVTQVA 414

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       +         L+    I ++ ++  FIL  +D    + +L     +   
Sbjct: 415 KELRE----NNLVFEELGPNSLSKRRVINNIASIIDFILHCDDIEKLIVVLDKVFIDTDN 470

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           ++  K   ++ +  +  E I  F    +     +I++  E      F    +    IL  
Sbjct: 471 EEELKYFLEKLKNYSTEEIIYDFEFSKLD--NDLIEFNEESDIYLNFKRGINIIKQILEY 528

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP------------ 558
              R   +          L++     L         L      ++               
Sbjct: 529 PIIRLDLLV-LFIGKKLNLEKEDKAVLDYISFYIKYLASENINMDLEDVYNLLFDVKNKV 587

Query: 559 -------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK-----HIKKM 606
                        +      + I   H +KG+E   VFL+      F           K 
Sbjct: 588 FNHIIDVVYEINGYEPEPGSITICNYHKSKGMEWDCVFLLGLVEYNFPDNINQKFQSDKW 647

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           ++     +   I     ++  + +I +D     K  +  E  RLLYVG+TRA + L++  
Sbjct: 648 YLKEKYKNPMAIIKSEVEAILKGSISTDYAHKTKIDSINEKIRLLYVGITRAKEMLVLSG 707

Query: 667 HSNTSNE 673
            +     
Sbjct: 708 SAYRDES 714


>gi|255655056|ref|ZP_05400465.1| putative helicase [Clostridium difficile QCD-23m63]
          Length = 739

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 105/667 (15%), Positives = 202/667 (30%), Gaps = 102/667 (15%)

Query: 45  TILKKAQTLQQASQTQCIEERF-----SLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKE 98
                A  LQ+         RF          +FL ++   + K I  +   +   +   
Sbjct: 109 EDFNIADDLQKNIILNECISRFRFEGGERAFRWFLKEQKDERWKEITLEAWERGFFEFAG 168

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
                  ++  I        + +     L +   +   Y+   K+N +LD++D++I    
Sbjct: 169 NAISEL-KYKGISPDKLEEILSRGQKGMLKIILPIYKLYDRKLKQNGLLDYDDILILAEK 227

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            L   +    +R K      +I  DE QD++ IQ  +I+ ++ +           R L  
Sbjct: 228 TLSLDEG---LRKKFQTRYKYIFEDECQDSNEIQGNIIKIISSE----------NRNLVR 274

Query: 219 VGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           VGD  QSI   F  ++PK                        + +S RS+ DIL + + +
Sbjct: 275 VGDINQSITGTFSSSDPKFFKEF----------INSADFCYRMDMSNRSSKDILDLANTL 324

Query: 278 -------FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
                  F   E    L +    T+ +                     + +       W 
Sbjct: 325 VEYVTKEFRQEECRHALEDMQIKTVPNGMGYKENP-------------NPEHYNINIKWY 371

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
             +    +++     AR +                G K     K I +LV   +    + 
Sbjct: 372 DSWKFEIEQT-----ARYV---------------KGIKNKYPDKSIGILVPFNEQVTQVA 411

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       +         L+    I ++ ++  FIL  +D    + +L     +   
Sbjct: 412 KELRE----NNLVFEELGPNSLSKRRVINNIASIIDFILHCDDIEKLIVVLDKVFIDTDN 467

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           ++  K   ++ +  +  E I  F    +     +I++  E      F    +    IL  
Sbjct: 468 EEELKYFLEKLKNYSTEEIIYDFEFSKLD--NDLIEFNEESDIYLNFKRGINIIKQILEY 525

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP------------ 558
              R   +          L++     L         L      ++               
Sbjct: 526 PIIRLDLLV-LFIGKKLNLEKEDKAVLDYISFYIKYLASENINMDLEDVYNLLFDVKNKV 584

Query: 559 -------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK-----HIKKM 606
                        +      + I   H +KG+E   VFL+      F           K 
Sbjct: 585 FNHIIDVVYEINGYEPEPGSITICNYHKSKGMEWDCVFLLGLVEYNFPDNINQKFQSDKW 644

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           ++     +   I     ++  + +I +D     K  +  E  RLLYVG+TRA + L++  
Sbjct: 645 YLKEKYKNPMAIIKSEVEAILKGSISTDYAHKTKIDSINEKIRLLYVGITRAKEMLVLSG 704

Query: 667 HSNTSNE 673
            +     
Sbjct: 705 SAYRDES 711


>gi|315282739|ref|ZP_07871077.1| ATP-dependent DNA helicase PcrA [Listeria marthii FSL S4-120]
 gi|313613615|gb|EFR87421.1| ATP-dependent DNA helicase PcrA [Listeria marthii FSL S4-120]
          Length = 396

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 112/358 (31%), Gaps = 50/358 (13%)

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            ++          D   IKD++A  R I + 
Sbjct: 13  PLSDFAILYRTNAQSRVMEEYF----MKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNN 68

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFA-----NCGISKFQHVI 485
           EDD+S   ++  P        + K+         +++E + +                  
Sbjct: 69  EDDISLTRIINVPKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFH 128

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQN 542
             +     +  F S  +    IL     R    +    E     + +DEFL+ T   E+ 
Sbjct: 129 DLVRGFTQMQDFLSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKE 188

Query: 543 SYS-SLQELISELEQYPPTIK--RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +   +L   +++L       K    +   +  V +MT+H+AKGLE PVVFLV     +F 
Sbjct: 189 NDDKTLIAFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFP 248

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H                                       ++   EE  RL YVG+TRA 
Sbjct: 249 HS----------------------------------RAIYEEDEMEEERRLAYVGITRAE 274

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           ++L +    +     + +       + +   +   +       +              
Sbjct: 275 EELFLTSAYSRMLYGRPSSNQESRFIGEIPRDLLELGNENKIKADKPYARPRMPQKAT 332


>gi|255597686|ref|XP_002536830.1| conserved hypothetical protein [Ricinus communis]
 gi|223518400|gb|EEF25553.1| conserved hypothetical protein [Ricinus communis]
          Length = 430

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/473 (17%), Positives = 167/473 (35%), Gaps = 50/473 (10%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              A   L     A      +    +DF ++       L++ D +  +  ++D  I H+L
Sbjct: 1   MIQALSQLLNIAAAQLWLCFQAQNEVDFVEISQRAFQALQEGDEATELAMRLDYRIQHLL 60

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDTS +Q +++++LT  +          RTLFAVGD  QSIY F  A     L   
Sbjct: 61  VDEFQDTSPMQIDLLKALTRGW-----QPDDGRTLFAVGDPMQSIYRFRKANVGLFLNA- 114

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSS 300
                         + ++L  + RS   ++  +++ F     A    +  +       ++
Sbjct: 115 ----ALHGIGDIALTPLKLWRNNRSRPPVVDWINQTFQGMLPASDAPQQGAIAYRPFVAT 170

Query: 301 RIGQVGT-VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
           R    G  V +   +   +     P                   + A +I   I      
Sbjct: 171 RAEATGAGVFVHPLITPVNSEDEEPADI--------------RHLEAEQIIRIIQQTRAD 216

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
           +               I VLVR RK    +    R  +N  ++S    +   L +   ++
Sbjct: 217 NPD-----------ATIAVLVRARKHLHALVTEMR--RNHAELSFQAVEIEELANRQIVQ 263

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-----EYIQKFA 474
           DL+ L   +  + D + ++ +L++P    +  D+  +  Q  +   +        + + +
Sbjct: 264 DLLTLTHALHQRADRVHWLALLRAPWCGLTLADMHALIGQDGQRSVLSLLSDDHILARLS 323

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
             G ++ +HV + +   +      +   +         G     +    +    +  F  
Sbjct: 324 ADGQTRARHVREVMQSALQWRGRTTVSRWVHNTWLRLGGANCLWNESDVQ---DVQAFFA 380

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
                EQ+   + Q L  ++++         +     ++ MT+H +KGLE   
Sbjct: 381 RIAALEQHGQFNPQALADDVQKL---YAAPDAKADASLQFMTIHKSKGLEFDT 430


>gi|224438366|ref|ZP_03659293.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818]
 gi|313144808|ref|ZP_07807001.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818]
 gi|313129839|gb|EFR47456.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818]
          Length = 676

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 99/738 (13%), Positives = 198/738 (26%), Gaps = 188/738 (25%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTI-LKKAQTLQQASQTQCIEERFSLLSSFFL 74
           + +   P     ++  NK  S  +E          A+ ++  +           + +  L
Sbjct: 43  LQQGFKPKDILLLTFTNKASSEMIERVGKIFGSSLAKEIESGTFHAVAYRYLRQMKNIHL 102

Query: 75  TQKFTPQ---KNIITQEI---NKKSPDLKEKLKKSQDEFIKIRDRF----NTYKMFKSTL 124
            Q    Q   K++  + +   +   P   + L +    F+    +               
Sbjct: 103 KQPKELQMLFKSLYEKRVFSQDSIKPYSAQYLYEIYSLFVNAAYKGGFGAWIVDRNPQQE 162

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
             + + + +   ++  K  +   D+ D                 +          +L DE
Sbjct: 163 PYIAIYEDVMEEFKALKHTHHYADYND---------LLLLYRESLLELSSPPFMEVLCDE 213

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+ +Q  ++ +L             P++LF VGD  QSIY+F+GA+   +       
Sbjct: 214 YQDTNPLQDSILDAL------------RPQSLFCVGDYDQSIYAFNGADISIISGFGEKY 261

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                       +  L  ++RS+  IL + +KV    E       +              
Sbjct: 262 --------ADSKVFTLSKNYRSSKHILELANKVIEKNERVYPKRLEVI------------ 301

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                           +  P +  W              +  + IA  I+          
Sbjct: 302 -------------KQGEFAPPKLVWY---------DELFLQYQGIAKRIA---------- 329

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 I  ++  ++ R       I    R L     I           D   +  ++ +
Sbjct: 330 ---LSNISYENTAIIFRNNSSADGIEASLREL----NIPSKRKGSVSFFDTKEVSLILDI 382

Query: 425 GRFILSQEDDLSFVCMLK------------------------SPLFNFSEDDIFKICTQR 460
                +  D ++ +  L                              FS     K   QR
Sbjct: 383 CSLTHNPRDMMAHIHTLSYGKGIGNSIAKDIYEALFILGEGDCHRGMFSPKSDVKAYQQR 442

Query: 461 HETETVYEYIQKFANCGISKFQH---------------------------VIKYIHELIH 493
            +   +  +   FA     +F                               + +  +  
Sbjct: 443 AKNTQLGLFDDFFALESQGRFNEYIIGGFASHPLLQHPKIQKEGAIFLSDFYEMLDSIR- 501

Query: 494 IAQFCSPHDFFTLILGA---KKGRQQFISRFGNEVIDVLD-EFLNFTLRNEQNSYSSLQE 549
                 P      I+ A       Q             +D   L   L + +   S L +
Sbjct: 502 --HIKEPKRLIERIVNAKFFTDIMQNLAKNRSKTKEGSIDSARLEQALESIKRKCSLLLD 559

Query: 550 LISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           L               +  + ++  + V ++++H +KGLE   V++VD     F ++   
Sbjct: 560 LAKNHNDLGKFLNAMILGSSEASEGSGVNLLSIHASKGLEFQNVYVVDLMDGRFPNR--- 616

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                              K  + EE  RL YV +TRA + LI+
Sbjct: 617 -------------------------------KLISKGGSIEEERRLFYVAITRAKENLIL 645

Query: 665 CKHSNTSNEKKSNQRTWY 682
                 + +      + +
Sbjct: 646 SFAKKDNMKNIDYAPSIF 663


>gi|291533235|emb|CBL06348.1| Superfamily I DNA and RNA helicases [Megamonas hypermegale ART12/1]
          Length = 413

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 96/300 (32%), Gaps = 50/300 (16%)

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           + VL R    +  +            +           D   IKD++A  R I + ED +
Sbjct: 1   MAVLYRTNAQSRALEEGF----MKAGVPYTMVGGLKFYDRKEIKDILAYLRVIYNPEDTI 56

Query: 436 SFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK-----FANCGISKFQHVIKYIH 489
           S + ++  P  +     + K+         T+++ I                 +  ++I 
Sbjct: 57  SLMRIINVPKRSLGAVTMNKLAEFADMYNMTLFDAISAPETAPITPKAKQSLANFAEFIL 116

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQ-NSYS 545
           E+++ +   S HD    ++       +       E    ++ + E L+     E+ N   
Sbjct: 117 EMLNNSVVLSVHDLIEQVMHKSGYIAELEKENTVENQTRLENIKELLSVARDFEKTNEEP 176

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L+  +S +               + V +MT+H+AKGLE PVVFL      +F H     
Sbjct: 177 TLENFLSTVSLVSDIDNADME--DDRVTLMTMHSAKGLEFPVVFLAGMEEGLFPHARTLM 234

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                                         YVG+TRA  +L I 
Sbjct: 235 NETEIEEERRT----------------------------------CYVGITRAERKLYIT 260


>gi|254974589|ref|ZP_05271061.1| putative helicase [Clostridium difficile QCD-66c26]
 gi|255091980|ref|ZP_05321458.1| putative helicase [Clostridium difficile CIP 107932]
 gi|255313714|ref|ZP_05355297.1| putative helicase [Clostridium difficile QCD-76w55]
 gi|255516396|ref|ZP_05384072.1| putative helicase [Clostridium difficile QCD-97b34]
 gi|255649495|ref|ZP_05396397.1| putative helicase [Clostridium difficile QCD-37x79]
 gi|260682662|ref|YP_003213947.1| putative helicase [Clostridium difficile CD196]
 gi|260686261|ref|YP_003217394.1| putative helicase [Clostridium difficile R20291]
 gi|306519629|ref|ZP_07405976.1| putative helicase [Clostridium difficile QCD-32g58]
 gi|260208825|emb|CBA61741.1| putative helicase [Clostridium difficile CD196]
 gi|260212277|emb|CBE03024.1| putative helicase [Clostridium difficile R20291]
          Length = 739

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 103/667 (15%), Positives = 198/667 (29%), Gaps = 102/667 (15%)

Query: 45  TILKKAQTLQQASQTQCIEERF-----SLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKE 98
                A  LQ++        RF          +FL ++   + K I  +   +   +   
Sbjct: 109 EDFNIADDLQKSIILNECISRFRFEGGERAFRWFLKEQKDERWKEIALEAWERGFFEFAG 168

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
                  ++  I        + +     L +   +   Y+   K+N +LD++D++I    
Sbjct: 169 NAISEL-KYKGISPDKLEEILSRGHKGMLKIILPIYKLYDRKLKQNGLLDYDDILILAEK 227

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            L   +    +R K      +I  DE QD++ IQ  +I+ ++ +           + L  
Sbjct: 228 TLSLDEG---LRKKFQTRYKYIFEDECQDSNEIQGNIIKIISSE----------NKNLVR 274

Query: 219 VGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           VGD  QSI   F  ++PK                        + +S RS+ DIL + + +
Sbjct: 275 VGDINQSITGTFSSSDPKFFKEF----------INSADFCYRMDMSNRSSKDILDLANTL 324

Query: 278 -------FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
                  F   E    L +    T+ +                                 
Sbjct: 325 VKYVTKEFRQEECRHALEDMQIKTVPNGMGYKENPNP----------------------- 361

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                   E     +    ++ I   I     +  G K     K I +LV   +    + 
Sbjct: 362 --------EHYNINVKWYESWKIE--IEQTARYVKGIKNKYPDKSIGILVPFNEQVTQVA 411

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       ++        L     I ++  +  F+L  +D    + +L     +   
Sbjct: 412 KELRE----NNLTFEELGPNSLNKRKVINNIAYIIDFMLHCDDVEKLIVVLNKVFIDTDN 467

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           ++  K   +  +  +  E I  F    +     +I++  E      F    D    IL  
Sbjct: 468 EEEIKYFLEELKNYSTEEIIYNFEFSKLD--NDLIEFKEESDIYLSFKRGIDIIKQILEY 525

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP------------ 558
              R   +          L++     L         L      ++               
Sbjct: 526 PIIRLDLLV-LFIGKKLNLEKEDKAVLDYISFYIKYLISENINMDLEDVYNLLFDVKNRV 584

Query: 559 -------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK-----HIKKM 606
                        +      + +   H +KG+E   VFL+      F           K 
Sbjct: 585 FNHIIDVVYEINGYEPEPGSITLCNYHKSKGMEWDCVFLLGLVEYNFPDNINQKFQSDKW 644

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           ++     +   I     ++  + +I +D     K  +  E  RLLYVG+TRA + L++  
Sbjct: 645 YLKEKYKNPMAIIKSEVEAILKGSISTDYAHKTKIDSINEKIRLLYVGITRAKEMLVLSG 704

Query: 667 HSNTSNE 673
            +     
Sbjct: 705 SAYRDES 711


>gi|16082036|ref|NP_394460.1| DNA helicase II (UvrD) related protein [Thermoplasma acidophilum
           DSM 1728]
 gi|10640315|emb|CAC12129.1| DNA helicase II (UvrD) related protein [Thermoplasma acidophilum]
          Length = 885

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 128/874 (14%), Positives = 254/874 (29%), Gaps = 180/874 (20%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            +  + +E     ++ F K R+     +  +   A       +   Y  AK+   V+D+ 
Sbjct: 137 DRIENPEETAASLREIFKKRREEKKIKEDLEEITAIFIHLSKIMDEYRNAKEARGVIDYN 196

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           D+II   +L KK                ++L+DE+QD S +Q  +I+S+ +D        
Sbjct: 197 DMIIKFLELEKKPH------------FKYVLVDELQDASDLQARLIKSVADD-------- 236

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                ++AVGD KQ+I              +       +N      +  L    R++  +
Sbjct: 237 -----IYAVGDRKQAI-----------FGFQGGGFGNFSNHFPDAHVNYLLTDHRNSEAV 280

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           L    + F          +   T +    +   + G+V++              ++E+  
Sbjct: 281 LNYAREFFLKNTKY---PDQYRTELDQLKASKARGGSVEVVS-----------GEEEAVL 326

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                 P+                                     + +L R+      I+
Sbjct: 327 DLLKRFPEGK-----------------------------------VGILARRNDQVIKIS 351

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
            +     +   +    +     +D    KD++A  + I+   D  S +  L +P      
Sbjct: 352 EIL----DSNGMRYASSALSAASDRAK-KDVIAFLKMII-YGDMQSVIDALFTPFSGLQI 405

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            + + I        T  +               ++  +             D F  ++  
Sbjct: 406 SEAYDIKESLISGNTSLQNY------------DLLNNLRRTYSAPGINGLIDMFEKLIIP 453

Query: 511 KKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
                        E     L E+L        N   S  +LI+ LE     +        
Sbjct: 454 IALAFDQRYFLTVERIYKNLREYL----DFYGNEDRS--DLINYLEICDDEV--QEIDAD 505

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             + ++TVH AKGLE   V                +      L  +  I +   +  S +
Sbjct: 506 ERISVLTVHKAKGLEFDHVIY-------LPKAKKDEKMSAVDLVAEQMIRLKTGRDISVD 558

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS-NQRTWYDMVYDS 688
                         ++E  R+ +V +TRA+  L+I         + S    +        
Sbjct: 559 -------------LEDEDTRVDFVAITRAAQNLVIVSDDERYLNRFSMKGGSITASTSTM 605

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
             +   +K+      +  D   A +          L      K  +    +   L  P +
Sbjct: 606 SKDYYDIKREPYLAFVRGDLKHASDMIHEEGRIRKLIYSGIRKNNVISFSLLASLEDPFR 665

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
              +    L  ++                     G  IH + Q +F              
Sbjct: 666 FLKDHILGLKYTSP----------------AMGFGTSIHSIAQDVFEGNV-----QAEQI 704

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD-IIISGR 867
             +    +      N++  I  +     +       S  EV + G     + D  I+ GR
Sbjct: 705 PERLRPYYW--NILNIMKKIQDVYGMSQI------GSELEVKIPGSAYMREADAFILYGR 756

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD---SYPNKSLVCLL 924
           ID +    +   I +YKT              +  QL+ Y  +        P++ +   +
Sbjct: 757 IDAVFSDGEKYLIVDYKTDKRKNSG-----NHYGDQLAFYRMLYSKANHIDPSR-VKTAI 810

Query: 925 IY------VSEPKVFI--IPQNKLNKAFAEISTK 950
            Y      V+  ++     P  K +    ++  K
Sbjct: 811 AYIGLRPGVNTGRIDWDLYPMEKNDSKIRDLIRK 844


>gi|255326996|ref|ZP_05368072.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296213|gb|EET75554.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
          Length = 1564

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 96/781 (12%), Positives = 181/781 (23%), Gaps = 74/781 (9%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH----YEEAKKKNCVLDFE 150
           D   +   +     + R    T K        L   + + A     Y   K +  VLDF 
Sbjct: 253 DFCTEQLAAYAAVPEPRRETKTEKDILKVQRLLR-NRRVYARMAMSYARVKARMQVLDFG 311

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL+     + +       IR         +L+DE QDTS  Q  +  S+       +   
Sbjct: 312 DLMRFAARIAEADPA---IREGERARFKVVLLDEFQDTSHAQMSLFSSIYG---ADEAAG 365

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                + AVGD KQSIY F GA   ++    R    +          + L +++R+   +
Sbjct: 366 IPAHPVMAVGDPKQSIYGFRGASDGQMFSFYRHFPTKH------VQPLFLSIAWRNDISV 419

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           L   + V    +        +   I        +     + E      +           
Sbjct: 420 LNAANHVAEKLKEVPEWVRAADGDITAAQVPDLRPRCALVGEPGSPAFEQAAAGMVGRVD 479

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD-----------ILVL 379
             +       S    A  IA  I+ M               ++ D           I VL
Sbjct: 480 LTY-----HDSDREEAVAIAERIAAMRAQAVREYERAYAAHRSGDGSVRPHLKMPEIAVL 534

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R            R       I V       L     + DL++  R +       +   
Sbjct: 535 ARVHGQL----DPIRVECERLGIPVQQVGLGGLLSQPEVVDLVSALRVLADPNRSDALAR 590

Query: 440 MLKSPLFNFSEDDIFKICTQ-----RHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
           +L    +     D+  +        R     + E +                 +      
Sbjct: 591 LLTGARWRLGAADMLALGDWAQSLVRERERALREQMALRMLAEAEDADAAAINLQAEHLR 650

Query: 495 AQFCSPHDFFTLILGAKKGRQQFIS--RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
           A      +     +    G    I       +     +       R  + S ++L+ L +
Sbjct: 651 AAQERLDETLKGAVEDSSGYASLIEAVENLPQDGADGEPLYGEQYRGRRFSPAALERLRA 710

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
             EQ                           E     L+D    V               
Sbjct: 711 FAEQMRVLRAGLSED----------LGTLLYEIERTTLLDIELAVRPGTDPLGSRANLDA 760

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
             +      +   +    I +       +       R L      +     +       +
Sbjct: 761 FHEVAAAYGMSAPRINAMIYAGSDGVSAEEGDPGARRFLLSSGGVSYVMGFLAWLERADD 820

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
           E+K        +       D    ++   ++    EW            T  +     + 
Sbjct: 821 EEK-------GLALGVVEPDPNAVQLMTMHAAKGLEWDHVLLPGLCGSATGGQTPNLWQM 873

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
             +                        +  +             +         H  ++ 
Sbjct: 874 SANAALPWPLRGDREYLPSILETPEEITAFEKAKDLEDYLAEHKDDAAE-----HAGME- 927

Query: 793 IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-----LLSITRLLENPMMTTAMSCDSYS 847
                 +       +    +A  W +     L        +  +L NP      +     
Sbjct: 928 -DRRLMYVAMTRARNLLALSAYRWKSAAMLPLPVQPFWEELLEMLFNP-FVGLDAPSVRF 985

Query: 848 E 848
           E
Sbjct: 986 E 986



 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/425 (7%), Positives = 95/425 (22%), Gaps = 63/425 (14%)

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
               + +     K   +         TV  A  +E    F          +       + P
Sbjct: 1138 PEWIIEATEREKWREAQPPQPGFSPTVAAALPIEVRGQFAQKNYEDRNPNLGAVLTAMWP 1197

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                +  +        + N     +++  +    E    +       A ++  +      
Sbjct: 1198 FDPLERPVIWRWASDDALNRGTEAVLRRGQHEQLEREIAINSSSRREAVERAALAVELAV 1257

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
               +    ++       + H+   + +     +++ +             +  L  +   
Sbjct: 1258 GAGEDDLHQSGDAAGESANHSASAIPESLRQQAVDWEREADLLLLMMGQTDPVLNDQ--- 1314

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                           P     +    L+     T  +         ++    G  +H L+
Sbjct: 1315 --------------LPGHLSASTFIRLSEDPQGTVHQLMRPVPQRPSRAATIGTAVHALI 1360

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEY----------------------------- 821
            +  F +                    P                                 
Sbjct: 1361 EEHFGVAPSADPLEAPDAEDTVGVDLPGSAAASAPPADSVDPADQQEQDEFTFEDDFEES 1420

Query: 822  -----KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
                  ++     R   +   +       ++   V   +    + + + GRID +  ++ 
Sbjct: 1421 ESELDASVQRLWERFATSEWGSDEWKDRIWA---VEYPVETHIEGVSLRGRIDAVFRTED 1477

Query: 877  ----NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEP 930
                   + ++K+             +   QL +Y              +  + +Y+   
Sbjct: 1478 EDGERWVLVDWKSGSRPK---MATMQSRRFQLGLYRIAFSRIMGMDPERISTVFVYLGGK 1534

Query: 931  KVFII 935
             V  +
Sbjct: 1535 GVAEV 1539


>gi|319760405|ref|YP_004124343.1| exodeoxyribonuclease V, beta subunit [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039119|gb|ADV33669.1| exodeoxyribonuclease V, beta subunit [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 1204

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 99/546 (18%), Positives = 194/546 (35%), Gaps = 74/546 (13%)

Query: 159 LLKK--RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
           LLK    +    +  KI +     +IDE QDT   Q+++   L          HS    L
Sbjct: 359 LLKNGIENTQNNLTKKILKYYPITIIDEFQDTDFSQYKIFHKLYS--------HSLKNGL 410

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             +GD KQ+IY F GA+    ++ ++    +            L +++RS+  ++  ++ 
Sbjct: 411 ILLGDPKQAIYGFRGADIFTYMKIRQNLSYKY----------HLNINWRSSPGMVNAINH 460

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +F    N     + S   I  +++       + +                  W      +
Sbjct: 461 LFQSTTNPFKFKDIS--FIPTQAAYKNNRHKLMIHNI--------PQSAMCFWLYLDKCV 510

Query: 337 PQESSASILARRIAYTISNMIG-----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
            + S  +I+A+  A T+  +I         + +N  K+ +Q  DI +LVR   +      
Sbjct: 511 TKNSYKTIMAQECAITLKKLIQNINDKKIWLKTNTDKKTLQTSDITILVRNHLEAS---- 566

Query: 392 LTRFLKNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
           L R       IS +  ++R  + + +   +L+ L R IL  + +  +   L +  F  + 
Sbjct: 567 LIRLELLKINISTIFLSNRNNIFNTIEAYELLLLLRAILFPKQETIYPA-LATIFFGLNA 625

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             I  +     + + +     K+     +    ++  I ++I        +     +L  
Sbjct: 626 MQIVNVYNNTLKWDQIINEFSKYYFIWKN--NSILSMIQKIIFY------YKIPKKLLST 677

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE--------LISELEQYPPTIK 562
             G+   I+         L E LN       N Y  +          L    ++    + 
Sbjct: 678 PSGKYNLINIL------HLGELLNNISTQFNNEYELIIWLELKINQPLNQYKKESMDYMV 731

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           R++  +HN ++I T+H +KGLE P+ FL    +   +      +       +        
Sbjct: 732 RSNRDDHNCIKISTIHKSKGLEFPLTFLPFAATSFNAKAQNTYITHFKYQLNLKQH---- 787

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                  N++      L +    E  RLLYV +TR+     I       N  +++     
Sbjct: 788 -------NLLHSDFDLLNEEHLSENLRLLYVAITRSIYHCSIGIAPIVRNRSQNSFNELT 840

Query: 683 DMVYDS 688
           D    +
Sbjct: 841 DFHRSA 846



 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 59/209 (28%), Gaps = 45/209 (21%)

Query: 764  TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
               K NL +  +  +    G   H LL+VI        +         N  L        
Sbjct: 964  ESSKLNLLTTHTFPKGQIYGTFFHNLLKVIIFKQTIDMQWLKIQMERYNVHLNWKTLIHQ 1023

Query: 824  LLLSITRL-LENP--MMTTAMSCDSYSEVSVSGKI------------------------- 855
             + +I    + +    ++   S +  +E+  S  I                         
Sbjct: 1024 WIYTIKHTPINHHNLTLSKIRSSNIQTEMKFSLSIKNCLTAQKLDSLCKFYDELSSKTAC 1083

Query: 856  -NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLS 905
               P    ++ G ID +    +  ++ +YKT+              +   I Y +  Q  
Sbjct: 1084 ITFPDILGMLQGFIDVVFYWNKKYYLLDYKTNWLGSNNFYYNYSSMQAAMIKYRYELQYQ 1143

Query: 906  IYEKILKDSYPNKSLV-------CLLIYV 927
            +Y   +     +K +          + Y+
Sbjct: 1144 LYTIAIHRFLKHKIVSYNYEKDFGGIYYL 1172


>gi|257459551|ref|ZP_05624660.1| acyl carrier protein [Campylobacter gracilis RM3268]
 gi|257442976|gb|EEV18110.1| acyl carrier protein [Campylobacter gracilis RM3268]
          Length = 684

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 96/696 (13%), Positives = 196/696 (28%), Gaps = 120/696 (17%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
           K    +        +K ++ ++  G  T    +  L +      I ++ + L +  L   
Sbjct: 70  KAASEMIARLQRHFDKKITSAIVAG--TFHAVSYALLRELGKGVILKQPAELKT-LLKSL 126

Query: 78  FTPQKNIITQEINKKSPD-LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              +K     +        L +     Q++ +         K ++       +   +   
Sbjct: 127 VERRKFYHVSDTRPYGGAYLYDVYSLYQNKEMSADFATWFSKNYEDQAEFAEIYADILRE 186

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           +EE K K    DF D+++     L+K               + IL+DE QDT+ +Q  +I
Sbjct: 187 FEEEKAKFNYADFNDVLLKMRRELQKGAPL---------RFDEILVDEYQDTNSLQGSLI 237

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            +               ++LF VGD  QSIY+F+GA    +    +              
Sbjct: 238 DAFA------------TKSLFCVGDFDQSIYAFNGANIDIIGSFGKRF--------ADAK 277

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           I  L +++RS++ IL + ++V +                +  + R               
Sbjct: 278 IYALNINYRSSSAILALANRVIANNPRLYEKKLIVGREGKFSAPR--------------- 322

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                              L      +     +A  I+                +  + I
Sbjct: 323 -------------------LHVYDDTAAQYAHVAAQIAQ-------------SGVPREKI 350

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            V+ R       +    + L     I           +   IK    +   I++ +D ++
Sbjct: 351 AVIFRNNSSADGVEVALKEL----GIGAKRKGGVSFFESREIKVFTDIFAMIINPKDMMA 406

Query: 437 FVCM--------------LKSPLFNFSEDDIFKICTQRHETETVYEYIQK---------- 472
           F+                L   L       I     +  E+  ++E  +K          
Sbjct: 407 FMSTCEYARGVGSALSKELFDALIALGHGSIHAGLLRPDESVKIFEKKRKNYQLGLFDDV 466

Query: 473 -----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
                 +     +F    +    L H         F   I    K               
Sbjct: 467 DIIGSVSRFEALEFDEFFRSHPVLKHNKITEGGAVFLHEIYKIFKKSGSATRSATLISQI 526

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESP 586
                 +          ++L+             K+   +  +++  I+     K  + P
Sbjct: 527 KNSCLFSLVADFIATKRATLKNGK-----IDDERKKDEISRIYDKCGILEQIAGKYAD-P 580

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
             F              + ++++            +       N   +L       + EE
Sbjct: 581 QSFYNFITLGAKEMSEGEGVNLLSVHASKGLEFCSVYLIDLAQNRFPNLKLMAMGGSLEE 640

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             RL YV +TRA D+L++         K S + + +
Sbjct: 641 ERRLFYVAVTRARDELVLSYAKFDKIRKVSYEPSCF 676


>gi|292656941|ref|YP_003536838.1| UvrD/REP helicase domain-containing protein [Haloferax volcanii DS2]
 gi|291372676|gb|ADE04903.1| UvrD/REP helicase domain protein [Haloferax volcanii DS2]
          Length = 1174

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 115/1020 (11%), Positives = 272/1020 (26%), Gaps = 149/1020 (14%)

Query: 15   LIYKDLWPLPYFQVSDINKYVSL-SMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
             ++ + +       +   +   L +           A+ L++A +         L +  F
Sbjct: 159  RVHAECYDRISDDPACARRLERLEAAYPSGDHDAGVAEMLERALRYC---RDRRLTTEAF 215

Query: 74   LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN------------------ 115
              +    +  +          D+   +++   ++    +R                    
Sbjct: 216  RVELERTRDAVYGDGEPDSFEDVVSSVERCLGDYEAAGERARDSVSDVDRGRIVEADNAL 275

Query: 116  TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK------KRDVSAWI 169
             +                   Y +A ++  VL   D+    +           R++   +
Sbjct: 276  YHAWGARIEDLCETLSTYRETYRDAVREFGVLSHIDVSYLVDAYFGGEFEDFDRELRDHV 335

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              K    I  +++DE QD S IQ   +  L           +    +   GD  Q IY +
Sbjct: 336  LGKYRSRIRSLIVDEAQDVSAIQHAALSHLV----------TPEVRVLGCGDVLQGIYLW 385

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV---FSIPENAQG 286
              A+P           +                ++R    I + V+ V            
Sbjct: 386  RHADPSLFESATTS-GRYLGIDWDVHENRTAATTYRCVPAIASAVNTVAEPIFGDPARGN 444

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            + +         ++R      V+     VS      +P   +W +      +       A
Sbjct: 445  IGDLDAEYTPLEAARDE----VEETAVHVSSFTGVGHPGTSTWANPDGGRGE-------A 493

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A  IS  I   T              I VL R++                     V 
Sbjct: 494  NILATHISRGISDGTFADENG----DPLGITVLFRRKSRMSDYDAAFEAEGLR-----VR 544

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
            N    L D  A++ +  +  +++          ++          +             +
Sbjct: 545  NASENLFDCPAVRAVFDVCDWLVDSASPEGTRRLVTESGLGLESLEGIFEANAWSVDRVL 604

Query: 467  YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--- 523
                +        +    ++ + +   + +      +   ++GA   R      FG+   
Sbjct: 605  DSADEGALTEAQRETLAALRRLRDRRDVFETFPARTYVEEVVGALALRADPHGDFGDVDP 664

Query: 524  -EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT-----IKRAHSANHNEVRIMTV 577
             + +   D  +    +   + + SL +L+  +E +         + +      +V   TV
Sbjct: 665  AQRVANADALVETIAQWAGDEHHSLPDLLDLVEPFREEPDAGPTRPSSVDADYDVLFQTV 724

Query: 578  HTAKGLESPVVFLVDTGSQVFSH-------------------------------KHIKKM 606
            H AKG +  VV + D G  +++                                     +
Sbjct: 725  HRAKGDQDDVVVIADPGFNIWTQGPHAQRFVAQGNIAGLAPPTDASAPTDVTIPPFDGGL 784

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDL---------IKHLKKSTQEEYNRLLYVGMTR 657
            +             W         + +           ++ L ++ + E  RLLYV +TR
Sbjct: 785  YDPSDGWQRDVGLRWATARWRDTAVPTADPDVLVGPPRLRRLAENERAESWRLLYVALTR 844

Query: 658  ASDQLIICKHSNTSNEKKS-------------NQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            A D L+I         +                             +D   ++I++  + 
Sbjct: 845  AMDHLMIPLPRTFPGGRPRDRWLDSIRDGLRFPDGCTETYTLAPIESDPNSERIRIGVND 904

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                   +   +  P      R     +L           +      ++        +  
Sbjct: 905  ADLLARRHRKGSSTPLPEVAVRAPISDRLAPWVPRFVNPSTMYPLTKDKDRYALAHLLGE 964

Query: 765  -------KGKTNLESLLSDNQTFNRGLIIHKLL---------QVIFTLPEHKRKNFITSY 808
                       +L  +         G  +H +L         +        + ++     
Sbjct: 965  PLHTETNDVAEDLPLVFERMGPDEVGSCVHGVLTELVKREVSERAVRSMGDEVRDVFDEV 1024

Query: 809  CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-----EVSVSGKINCPKKDII 863
              +        E   L    + +L++ + +   +  + +     E  V G ++    +I 
Sbjct: 1025 VHEREPGIGVDERDGLFAFFSDVLDDFLESDLWARIAEAETVVVERPVDGLVSLGDVEIE 1084

Query: 864  ISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL-KDSYPNKSLV 921
            + G  D +++S    I + + K    +    E     +  Q++ Y  +  +     + + 
Sbjct: 1085 VHGEADFLTVSPSGEIHVTDVK--ASLTDLTEETRRRYELQVAAYGYLFDRQEASAEPVR 1142


>gi|254388949|ref|ZP_05004180.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294814884|ref|ZP_06773527.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702667|gb|EDY48479.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|294327483|gb|EFG09126.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 745

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 88/571 (15%), Positives = 160/571 (28%), Gaps = 160/571 (28%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              K  +           + A YE+ K+   V+DFED+++ T  +L+       I  +I 
Sbjct: 190 AVAKSLRDAPRDPAEISQIYAMYEQLKRDRAVIDFEDVLLLTVGILQD---RPDIADQIR 246

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++  H ++DE QD S +Q  ++     D             L  VGD  Q+IYSF GA P
Sbjct: 247 RQYQHFVVDEYQDVSPLQQRLLELWLGDRDS----------LCVVGDASQTIYSFTGATP 296

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L  +              ++++L   +RST  ++ + + + S           +   
Sbjct: 297 DHLLSFRTR--------HPSATVVKLVRDYRSTPQVVHLANGLLSQARGR-----AAEHR 343

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           +   S R                                 S  +       A   A  I 
Sbjct: 344 LELVSQRESGPEP---------------------------SYEEYPDEPAEAEGTARRIR 376

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +I T           + A +I VL R    + +          D  +           +
Sbjct: 377 ELIDTG----------VPAGEIAVLYRVNAQSEVYEQAL----ADAGVPYQLRGAERFFE 422

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              +++     R                        D +                 Q ++
Sbjct: 423 RQEVREAGVALRGAA----------------RAGGNDSLLDSADDLPGQVRAVLSTQGWS 466

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
               +    V      L  + +                                      
Sbjct: 467 TEPPAGSGAVRDRWESLAALVR-------------------------------------- 488

Query: 535 FTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 +  S ++L +L++EL++               V + ++H AKGLE   VF+V  
Sbjct: 489 LAEDFARARSGATLADLVAELDERAAAQHAPTVQG---VTLASMHAAKGLEWDAVFVVGL 545

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +                                     +         EE  RLLYV
Sbjct: 546 TEGMMP-----------------------------------ITYAKTDEQIEEERRLLYV 570

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
           G+TRA   L +    + S   ++++R    +
Sbjct: 571 GVTRARFHLSLSWALSRSPGGRASRRPTRFL 601


>gi|289809878|ref|ZP_06540507.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 194

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 87/255 (34%), Gaps = 66/255 (25%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 6   QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 62

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+  +R L  D             +  VGD+ QSIY + GA+ + + R           
Sbjct: 63  IQYAWVRLLAGD----------TGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP----- 107

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++RST++IL+V + +        G                       L
Sbjct: 108 ---GAQTIRLEQNYRSTSNILSVANALIENNNGRLGKK---------------------L 143

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W           + +  S    F+ L +       AR +   I          +      
Sbjct: 144 W-------TDGVDGEPISLYCAFNELDE-------ARFVVNRIKTWQDNGGALAQ----- 184

Query: 371 IQAKDILVLVRKRKD 385
                  +L R    
Sbjct: 185 -----CAILYRSNAQ 194


>gi|325661838|ref|ZP_08150459.1| hypothetical protein HMPREF0490_01195 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471816|gb|EGC75033.1| hypothetical protein HMPREF0490_01195 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 946

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 111/628 (17%), Positives = 221/628 (35%), Gaps = 66/628 (10%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ------EINKKSPDLKEKLKKSQDEF 107
           +  S      + + L  S FL +K     N I++      ++ KK   + ++L +     
Sbjct: 348 RILSDEYGRAKIYDLYLSKFLEEKEEENSNFISEIPVPIYDLKKKIIGIADRLLQKSVNL 407

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLN----AHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           + I+       +  +      + + +       Y  A  +   +D    +     LL + 
Sbjct: 408 VDIKAEEMGTTIDNTLPYFNEILQNVVFPAEIEYLSAMNEKNAMD----LKECIILLNQ- 462

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
            ++      ++ ++ ++ IDE QDT  +Q E  + L +              LF VGD K
Sbjct: 463 VLAYGADNIVNLKLRYLFIDEFQDTDDVQIETFQKLQKCIAS-------DCRLFVVGDLK 515

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY F GA      + K            ++ I  L +++R+ A +L + D +F     
Sbjct: 516 QSIYRFRGARLSAFDQLKEY-------KKYEWEIFHLNINYRTDARLLDLYDSIF-QKMG 567

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G    +    R  S +I +    +L + V      Q       +   FD L  ++   
Sbjct: 568 EDGYLPYNKDNDRLSSGKIFESDDNELLQCVPCHGKDQ----DVFFDCLFDILDIQT--- 620

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              R+++  I          S      I+ + I +LVR    T  I  L    K    I 
Sbjct: 621 ---RKLSEIIKREKDKGKKLS------IEERTIAILVRSNWQTDNI--LKEAKKRSVNIE 669

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
           +         +    +DL  L   I + ++ +  V  ++S   + + D  +       E 
Sbjct: 670 IKSGGDLFQLEST--QDLFKLILAIENAQNPVYLVNFIESNYTDLTLD--YHKFHGLSEN 725

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           E + +  +      + + +   +   E+++             I  A +  + +      
Sbjct: 726 EKLLKLNRILDEFFMFRMKKSWQ---EVLNEVYAKPVLFALKHIYDALEPWKTYSKNSIE 782

Query: 524 EV--IDVLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSANHNEVRIM 575
           +   ++  D  L   ++  +    ++ ++   LE      Q   +       +   +   
Sbjct: 783 QSFYMENYDYLLEKIIKFAKIDSLTINQISKYLEINILSRQQELSRMPEVDEDGIHIMCT 842

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH +KGLE   + L  T   +     I+K+ +  + +          ++K R    +  
Sbjct: 843 TVHKSKGLEYGTIVLPYTSEDI---GDIRKVKLDANYSKSKLAYTVQFENKVRERNSNYD 899

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            K  K     E +R+LYV +TRA    I
Sbjct: 900 EKIEKDEQIAEESRILYVALTRAIRNCI 927


>gi|308377258|ref|ZP_07441668.2| hypothetical protein TMHG_02416 [Mycobacterium tuberculosis
           SUMu008]
 gi|308348513|gb|EFP37364.1| hypothetical protein TMHG_02416 [Mycobacterium tuberculosis
           SUMu008]
          Length = 605

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 78/582 (13%), Positives = 162/582 (27%), Gaps = 89/582 (15%)

Query: 449 SEDDIFKICTQRHETETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           S + I    +   +   + + I        ++  G  +   +   +  L       S  D
Sbjct: 23  SPESIAMAASADADNPCLADAISDPGSAEGYSVAGYGRIGALAGELSALRGRLGH-SLPD 81

Query: 503 FFTLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNE-----QNSYSSLQELISE 553
               +        +  +      G    + LD F +           ++S +S+  L++ 
Sbjct: 82  LVAEVRRVLGVDCEVRASAPVSGGWAGPEHLDAFADVVAGYAERASARSSEASVAGLLAY 141

Query: 554 LEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L+              +   + V+++TVH AKGLE  VV +      VF     +   + 
Sbjct: 142 LDVAEVAENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLT 201

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN----------------RLLYV 653
                 P +      + +    V D      +    +                  RLLYV
Sbjct: 202 DPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEHRRLLDRRRVDEERRLLYV 261

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRT------------------WYDMVYDSFHNDERV 695
            +TRA D L++  H       K    +                     +V          
Sbjct: 262 AVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAAAGDPCGVVEQWASAPAGD 321

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN------ 749
           ++  L ++  +  W A   +    +              D       +  P +       
Sbjct: 322 ERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLPGSTTDIDHPPRPGDAPWS 381

Query: 750 -DINEPYILNPSTIDTKGKTNLE---------SLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            D++                 L           L+ D     +     +L+  +   P+ 
Sbjct: 382 TDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGARQ-----RLMCRLPKRPDP 436

Query: 800 K--RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM----MTTAMSCDSYS---EVS 850
                +   ++  +        +  +L  +  R + +P     +  A +  S++     +
Sbjct: 437 HAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELAALQRAFTASSWAARTPAA 496

Query: 851 VSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
           V      P  D ++ GRID + +       + ++KT                 QL++Y  
Sbjct: 497 VEVPFEMPIGDTVVRGRIDAVFVDPDGGATVVDWKTGKPPHGPAAMRQAA--VQLAVYRL 554

Query: 910 ILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                   P  S+     YV      +  +       A + T
Sbjct: 555 AWAALRGCPTSSVRTAFYYVRSGITVVPDELPAPGELAMLLT 596


>gi|299541749|ref|ZP_07052077.1| UvrD/REP helicase [Lysinibacillus fusiformis ZC1]
 gi|298725744|gb|EFI66380.1| UvrD/REP helicase [Lysinibacillus fusiformis ZC1]
          Length = 625

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 78/586 (13%), Positives = 173/586 (29%), Gaps = 124/586 (21%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA-KYLNAHYEEAKKKNCVLDF 149
            ++ D +  LK   ++  K++  + + ++   +     +    +   Y         LDF
Sbjct: 131 DENRDKRNLLKNCLNKISKLKQAYISPEVLSDSQIESDILFARIYEAYNNMMLAQKALDF 190

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +D++  +  +  +      I     +   +I +DE QD +  Q+++IR+L +DF      
Sbjct: 191 DDILFYSYRIFTE---RPQIAKSYTRLYKYIFVDEAQDLNEAQYKIIRALCKDFS----- 242

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 L  VGD  QSIY F+G++           +              L  +FRST  
Sbjct: 243 -----NLMMVGDPAQSIYGFNGSDSSY---MTENFKSEFNPVE-----YNLVENFRSTKK 289

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+    K+                     S      G + +      + +++        
Sbjct: 290 IIDAAKKI---------------QVNSKSSVVYPLEGELSIIPLENEEEEAE-------- 326

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                              I   ++ ++     +  G    ++ + I ++ R R     I
Sbjct: 327 ------------------WIKDKVNELLINGNEWIEG---AVELEKIGIIARNRYIFNSI 365

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               +     Y            +  + I +     R I++  D++ F  ++    +   
Sbjct: 366 EENFKKNDIAYNYGSSSRSVESESAEMKIFEAG--LRVIINPYDNVHFNQIINLLHYKCD 423

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL- 508
             +   + T         + +           ++    +  +     F       + +L 
Sbjct: 424 VKNNRFLDTMLEIDV---DMVTNVDKEIFKAVKNSWGIL--IEDEEGFTKALTEISNVLF 478

Query: 509 ------GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
                    +G Q  I++      +    +   T+        S     +++      + 
Sbjct: 479 SQTQSGDLDEGSQYLINKDIEMWREHWIRYCGQTV----VGQRSFSHFRNQVALGRTQMH 534

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                N   + ++TVH +KGLE  +VFLV      F                        
Sbjct: 535 -----NSKGISLLTVHMSKGLEYDIVFLVGMCEGTFPD---------------------- 567

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                         +   + +  E    ++V +TRA     +    
Sbjct: 568 -------------YRATNEQSYNEELNNMFVALTRAKRICYLTYPK 600


>gi|157156759|ref|YP_001464364.1| UvrD family helicase [Escherichia coli E24377A]
 gi|157078789|gb|ABV18497.1| helicase, UvrD family [Escherichia coli E24377A]
          Length = 630

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 85/541 (15%), Positives = 163/541 (30%), Gaps = 114/541 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+ +   +  +D++D+++  + +L   D   WI      +  H+ +DE QD +  Q
Sbjct: 177 IYQDYQASLLNSGGIDYDDILVYAHRILLTHD---WIAKIYRSKYKHVCVDEAQDLNKAQ 233

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E I+ L  D           +++  VGD  Q IY F+G+                    
Sbjct: 234 YEFIKVLCGDVI---------KSILMVGDPNQMIYGFNGSS---KDYFCEDFINDFFPNQ 281

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 EL  ++RS   I+   +K+                                   
Sbjct: 282 -----FELKENYRSAKAIIRAANKL----------------------------------- 301

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       + +        + + +S    A  +  TI +++  +    +  +  I 
Sbjct: 302 ------RPGSQAEIDYALEGGVRISEFASEEDEADTVVATIKHLL--ELKVHDEIEGDIS 353

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +++V+ R R     +    +        S+   +R +       K L    R  L+ +
Sbjct: 354 LNNMVVIGRNRFVFGKLEKCLKENLIP--YSLRKGERALEPSTRFGKALDYAIRVKLNSK 411

Query: 433 DDLS----FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           D +        +  S    ++ D + ++  Q   ++  Y  + +     I         I
Sbjct: 412 DWVDGKKLCQVLCISEPAGWTPDVLREMAVQISSSDDDYSIVFEKLLTTIDSLNIENPKI 471

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-YSSL 547
            +LI            T ++    G            I+ L EF     R ++     SL
Sbjct: 472 PKLIKEFN-----ALLTSLVENHNGISDDKIEDVKLSIEELKEFSGMWTRFKRKGLGDSL 526

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               + L           S+    + + TVHT KGLE  +VFL+     VF         
Sbjct: 527 VAFRNALALGQLAE----SSMDEGLTLSTVHTMKGLEKDIVFLIGMCEGVFPD------- 575

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                        +       EE     +V +TRA   L +   
Sbjct: 576 ----------------------------YRARTPKELEEERNNAFVAVTRAKRWLYVSYP 607

Query: 668 S 668
            
Sbjct: 608 R 608


>gi|296272340|ref|YP_003654971.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
 gi|296096514|gb|ADG92464.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299]
          Length = 680

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 86/582 (14%), Positives = 174/582 (29%), Gaps = 109/582 (18%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   +   KK+    +F+DL+    +LLK  +               IL+DE QD
Sbjct: 169 DIYEDVIKEFHILKKEYGYANFDDLLTIMLELLKTNEFD----------FKEILVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q +++ +              P++LF VGD  QSIY+F+G++   +          
Sbjct: 219 TNPLQGKLLEAF------------KPKSLFCVGDYDQSIYAFNGSDIGIISTFADRYD-- 264

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +  L  ++RST  IL +  KV    E     + +                 
Sbjct: 265 ------GAKVFTLRKNYRSTKPILQLATKVIEHNERIYDKNLEVVR-------------- 304

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                      D++ +P+  +++  FD                  IS +I   T      
Sbjct: 305 ----------QDAEYSPRLLTFSELFDQYE--------------HISKLISQSTTPH--- 337

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI ++ R       I    R       I           +   +K ++ +   
Sbjct: 338 ------SDIAIIFRNNSSADGIEANLREF----SIPAKRKGGKSFFEAAEVKFVLDIITL 387

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE--TETVYEYIQKFANCGISKFQHVI 485
           + S  D ++ + +L+       +     +     +     +++ +        + ++   
Sbjct: 388 MKSHNDMMAAIHILEYGK-GIGKAIAKDLFDALMKLGHGDLFQGLFNPDPNIKNPYESTK 446

Query: 486 K---YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--FGNEVIDVLDEFLNFTLR-- 538
                +      A+  S   F       K      +       E  + L EF        
Sbjct: 447 TKNIQLGLFDDFAELGSVSKFKDCGFDDKFLGNPILKHPKLSVEGGEFLFEFYLIVKDLK 506

Query: 539 ------------NEQNSYSSLQELISELEQYPPTIKRAHSANHNEV----RIMTVHTAKG 582
                        + N Y  L E++S         +   +     +    R +T+  +  
Sbjct: 507 RIKNPRSAIDHIFKSNLYDHLIEMLSNKRATRKDGQIDPAMKQTSIVRINRKITLLKSLS 566

Query: 583 LESPVV--FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
                +  F+               ++++            +      N    +     K
Sbjct: 567 YNYSDIEKFINAMVLGGSEMSEGDGVNLLSVHASKGLEFKEVYVIDLMNGRFPNQKLIAK 626

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             + EE  RL YV +TRA D L +        +K S   + +
Sbjct: 627 GGSIEEERRLFYVAVTRAKDILYLSYAKYDKVKKLSFVHSQF 668


>gi|126698622|ref|YP_001087519.1| putative helicase [Clostridium difficile 630]
 gi|255100074|ref|ZP_05329051.1| putative helicase [Clostridium difficile QCD-63q42]
 gi|255305964|ref|ZP_05350136.1| putative helicase [Clostridium difficile ATCC 43255]
 gi|115250059|emb|CAJ67879.1| putative helicase, superfamily 1, UvrD-family [Clostridium
           difficile]
          Length = 739

 Score =  155 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 103/667 (15%), Positives = 198/667 (29%), Gaps = 102/667 (15%)

Query: 45  TILKKAQTLQQASQTQCIEERF-----SLLSSFFLTQKFTPQ-KNIITQEINKKSPDLKE 98
                A  LQ++        RF          +FL ++   + K I  +   +   +   
Sbjct: 109 EDFNIADDLQKSIILNECISRFRFEGGERAFRWFLKEQKDERWKEITLEAWERGFFEFAG 168

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
                  ++  I        + +     L +   +   Y+   K+N +LD++D++I    
Sbjct: 169 NAISEL-KYKGISPDKLEEILSRGHKGMLKIILPIYKLYDRKLKQNGLLDYDDILILAEK 227

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            L   +    +R K      +I  DE QD++ IQ  +I+ ++ +           + L  
Sbjct: 228 TLSLDEG---LRKKFQTRYKYIFEDECQDSNEIQGNIIKIISSE----------NKNLVR 274

Query: 219 VGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           VGD  QSI   F  ++PK                        + +S RS+ DIL + + +
Sbjct: 275 VGDINQSITGTFSSSDPKFFKEF----------INSADFCYRMDMSNRSSKDILDLANTL 324

Query: 278 -------FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
                  F   E    L +    T+ +                                 
Sbjct: 325 VKYVTKEFRQKECRHALEDMQIKTVPNGMGYKENPNP----------------------- 361

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                   E     +    ++ I   I     +  G K     K I +LV   +    + 
Sbjct: 362 --------EHYNINVKWYESWKIE--IEQTARYVKGIKNKYPDKSIGILVPFNEQVTQVA 411

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R       ++        L     I ++  +  F+L  +D    + +L     +   
Sbjct: 412 KELRE----NNLTFEELGPNSLNKRKVINNIAYIIDFMLHCDDVEKLIVVLNKVFIDTDN 467

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           ++  K   +  +  +  E I  F    +     +I++  E      F    D    IL  
Sbjct: 468 EEEIKYFLEELKNYSTEEIIYNFEFSKLD--NDLIEFKEESDIYLSFKRGIDIIKQILEY 525

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP------------ 558
              R   +          L++     L         L      ++               
Sbjct: 526 PIIRLDLLV-LFIGKKLNLEKEDKAVLDYISFYIKYLVSENINMDLEDVYNLLFDVKNRV 584

Query: 559 -------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK-----HIKKM 606
                        +      + +   H +KG+E   VFL+      F           K 
Sbjct: 585 FNHIIDVVYEINGYEPEPGSITLCNYHKSKGMEWDCVFLLGLVEYNFPDNINQKFQSDKW 644

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           ++     +   I     ++  + +I +D     K  +  E  RLLYVG+TRA + L++  
Sbjct: 645 YLKEKYKNPMAIIKSEVEAILKGSISTDYAHKTKIDSINEKIRLLYVGITRAKEMLVLSG 704

Query: 667 HSNTSNE 673
            +     
Sbjct: 705 SAYRDES 711


>gi|256831955|ref|YP_003160682.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
 gi|256685486|gb|ACV08379.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603]
          Length = 690

 Score =  155 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 85/699 (12%), Positives = 178/699 (25%), Gaps = 171/699 (24%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           + L +   T+       +  +++  +    K  +   QD     +             + 
Sbjct: 132 ARLVALAATRVGVEVDRVAVRDLASEIEWAKVTMLAPQDYVTAAQATGRAAPA----GSD 187

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 L   YEE K+   V+DFED+++    +L        +  ++  +    ++DE Q
Sbjct: 188 FRDVARLLDAYEEVKELAGVIDFEDVLLLLGGMLHD---RPDVARQVRDQYRRFVVDEYQ 244

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S +Q  V+                 R +  VGD  Q+IYSF GA P  +L        
Sbjct: 245 DVSPLQQFVLDQWLGQ----------RREVCVVGDPSQTIYSFTGATPHHLLNFGARYH- 293

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    + I L   +RS+  I+ V + + +   +                       
Sbjct: 294 -------DATTIRLVRDYRSSPQIVHVANTLLASATDR---------------------- 324

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                  +      +  P+        D           A+ +A  +  ++         
Sbjct: 325 --DKVPVLELVSQREPGPEVGFEVYEDD--------VAEAQGVARHVKELVDAGAA---- 370

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                 A D+ VLVR              +     +S              ++  + L +
Sbjct: 371 ------ASDVAVLVRTNAQLEQYEEALSAV----GLSTQVRGGERFFSRKDVRSAVVLLQ 420

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                      + ++   + +                                  +   +
Sbjct: 421 GAAKAGTGDDAISVIDDCVRSVG--------------------WSNDPPQTRGAVRDRWE 460

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +  L  +                                    E ++          + 
Sbjct: 461 ALDALRRLCH----------------------------------ELVSQ--------GND 478

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L ++++E+++             + V + ++H AKGLE P+V L      +         
Sbjct: 479 LAQVVAEIQERARHHHAPTV---DSVTLASLHAAKGLEWPIVHLAGMSEGLMP------- 528

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                       +      +   E  RLLYVGMTRA + L +  
Sbjct: 529 ----------------------------ISLAATPTAIAEERRLLYVGMTRAQELLTLSY 560

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             + S   +S ++    +           +                       +    E 
Sbjct: 561 SQSRSGTSRSVRQVSRFLAPLWPGGAPASRSRTQRAVPRDGFDSFGRAGAQEMDRAVFEA 620

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
            +  +  +  +           + +       P   D  
Sbjct: 621 LKAWRTQVATRHDMADHAVLSTSVMRALATARPGNRDAL 659


>gi|91772773|ref|YP_565465.1| ATP-dependent DNA helicase Rep [Methanococcoides burtonii DSM 6242]
 gi|91711788|gb|ABE51715.1| DNA helicase, ATP dependent [Methanococcoides burtonii DSM 6242]
          Length = 587

 Score =  155 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/536 (14%), Positives = 160/536 (29%), Gaps = 126/536 (23%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +  +Y E       +DF+DL+   ++LL     +A +     +    I IDE QD +  Q
Sbjct: 175 IYHNYREILDNQNAIDFDDLLFLAHNLLVNYPKTAAL---YRRSFFAICIDEAQDLNNAQ 231

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNA 251
           ++++ +L          +     +  VGD  QSIY+F+G+ PK +               
Sbjct: 232 YQLLLALV---------NGEFNNIIMVGDSNQSIYNFNGSSPKYMDEQFVHDFD------ 276

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               ++I+L  ++RS+ ++L    K+                                  
Sbjct: 277 --PVAVIKLNENYRSSKEVLLAAKKII--------------------------------- 301

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                         +E          +       A+ +   I+ ++   T   +  +  I
Sbjct: 302 ----PDESDISETVKEGIFKIHCLKNEHDE----AQWVVDKINELLTAKT--HDDIEGEI 351

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV--GNDRFILTDHLAIKDLMALGRFIL 429
             + I VL R +     I      L  +  +          I  +   +K      R  L
Sbjct: 352 TLEKIAVLARNK----YIFNQLENLLTENNLPFYYKMTPGMIRFESDLMKIFDLSLRVRL 407

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +  DDL    +L       +  +   +  +        E +Q                  
Sbjct: 408 NPLDDLHKQRLLN----YLNIKNSENMNLESMIPLVPDELVQNLILLVTELHDDGSNIKQ 463

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           +L       + +D            +   +   N++ ++L+ + N+     +    SL +
Sbjct: 464 KLESFRDTLTVND------------ENEKNMIFNDITEILNHWHNYAK---KTDNKSLHQ 508

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
             + +              H+ + + TVHT KG E  +VF++    + F      +   +
Sbjct: 509 FKNAMALGKTHPLTQ----HSGITLSTVHTMKGQEFDIVFIIGMDDETFPDYRAVRSGGI 564

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                               +    LYV  TRA   L + 
Sbjct: 565 ---------------------------------ELIQEKNNLYVAFTRAKRFLYVT 587


>gi|225377484|ref|ZP_03754705.1| hypothetical protein ROSEINA2194_03132 [Roseburia inulinivorans DSM
           16841]
 gi|225210676|gb|EEG93030.1| hypothetical protein ROSEINA2194_03132 [Roseburia inulinivorans DSM
           16841]
          Length = 734

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 101/738 (13%), Positives = 220/738 (29%), Gaps = 160/738 (21%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E +Y     +   Q+     + S+ +      +  +     +       +E   
Sbjct: 66  AADEIKERLYALEPEIKEEQLWGFGTFHSVCLTMLKKMLPVENLGYTKEFMVMDPDEELE 125

Query: 68  LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           +     LT +   + KN + + + +K+   ++ ++K +                      
Sbjct: 126 MAEQLILTYQLKIKYKNRLKKRLEQKNSKYQDDIEKLKALLK------------------ 167

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID----------QE 176
                       E K++   + F++L+ NT  L+K       +  K            Q+
Sbjct: 168 ------------EEKRRQDKMTFDELLDNTCKLVKMSAEIEEVSKKNANLQDNENTGMQD 215

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           I+ I++DEVQD+   Q E+I  L            +    FAVGD  Q IYS+ G+    
Sbjct: 216 ISWIIVDEVQDSDEKQLELIDCL----------KKTQTCFFAVGDPNQVIYSWRGSAFHI 265

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
             + K   Q          + + LP+++RS+++IL V           QG          
Sbjct: 266 FYQLKTKYQ---------ATELTLPVNYRSSSEILAVARCFMQQGGTLQG---------- 306

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                                 +S    Q  +    F            A  +A  I  +
Sbjct: 307 --------------------GRESGDKIQIRNMYDPF----------QEADYLAGRIREL 336

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
             +           +  ++I +  R +  + +   +         I    + +  + D  
Sbjct: 337 HASG----------LPYREIAIFYRLQNQSEIFEHVFE----KEGIPFEVSLKKTVKDIP 382

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            +  L+ + RF ++ +D  S +  L    +           T    +ET     +   + 
Sbjct: 383 VLDWLIKVLRFSVNPKDKSSGIAALADKKYGDGMSVKEAEKTINILSETRKTQTEILKSE 442

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLN 534
                  + + + E                +               + V D   + +F  
Sbjct: 443 NAKSGSDICEKMLEF-SKVYASKQVALPEDLWSYFSLENHLHPTTASYVEDRTYVMDFFT 501

Query: 535 FTLRNEQNSYSS-LQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVF 589
             +  ++    + ++     L                  ++ V++MT+H +KGLE   VF
Sbjct: 502 RMITYQKEQQKNVVEGFSEFLNMASLYGMNILKKEIHNENDTVKLMTLHASKGLEFSHVF 561

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +      +   +                                               R
Sbjct: 562 ITGVNYGLIPLQTKSFEEEEEEQ------------------------------------R 585

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L +VG+TRA + L +  +++    + +   + Y  +     N    ++    +S    + 
Sbjct: 586 LFFVGITRAKEHLELSYYTSPGQYRAAPGPSRY--LRMIPGNLVEGQEKDRESSATHLQD 643

Query: 710 IAYEWSTHHPENTPLERE 727
           +  +      E+  L+  
Sbjct: 644 LKRQILAERGEHRELQEA 661


>gi|320353212|ref|YP_004194551.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
 gi|320121714|gb|ADW17260.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032]
          Length = 1095

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 90/672 (13%), Positives = 181/672 (26%), Gaps = 120/672 (17%)

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
             +   E    L     T               ++ +  P+L+    + +   ++      
Sbjct: 521  NKAAAEVRERLGETAHTGAGITVATFHGYCLSQLRRFQPELRVIGPEERALVLEELHPQW 580

Query: 116  TYKMFKSTLASLTLAKYLNA--------HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            + +   +  A++TL               Y +   +  ++D + L+  T  LL+      
Sbjct: 581  SARQRDALAAAITLGCRQARSPSDPDQQRYFQWLAERSLIDLDALVPRTVALLRG---GG 637

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
                 +     H+ +DE QD +  Q+ ++  L +             T+FA+GD  Q+IY
Sbjct: 638  NEAESVRAATGHLFVDEFQDVNEAQYALVTLLAQ-----------TATVFAIGDPDQAIY 686

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
             F GA+P+                       +L  ++RS A I+   +++ S        
Sbjct: 687  GFRGADPRWFHAFIED---------VHPECHQLVCNYRSGAMIVRAAEQLISHNP----- 732

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                   +     +        +  Q  +  D +                        A 
Sbjct: 733  -----HPVPQAPMQPCGTAPGTIHLQRCANPDQE------------------------AI 763

Query: 348  RIAYTISNMI-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
             IA  I   +      +   F + +      +DI VL R  +             +   +
Sbjct: 764  FIADQIELQVGGTSHRSLERFDHAENSASSLRDIGVLYRTSRQA----EALATTLSRRGL 819

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                 +          + L      +    +    + +L        E  +  + TQ   
Sbjct: 820  PFQLVEIEAYYTKGNCRLLYLWMLLLAGLAESCHLLELL-GQEQGLGEQGMKVVRTQLGR 878

Query: 463  TETVYEYIQKFANC--GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            +    +      +           +                     IL A   R Q    
Sbjct: 879  SLLQDKQRGGVLDSLVLDGTAGAALARFRAFHGQLVGHDGERSLDSILTALMERYQL--- 935

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
              +     L       L        S     + L+++  ++          V + T+H A
Sbjct: 936  --DPRASDLVRLRETALTF----GRSFAAFAAHLQRFSDSVLYDP--RVEAVTLSTLHAA 987

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE PVVF+      +                                    +L+    
Sbjct: 988  KGLEFPVVFMAGVEDGLLPL-----------------------------APRRELVAEAL 1018

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            ++  +E  RL YVG+TRA   L +    + S      +      +      D       +
Sbjct: 1019 QAHVQEERRLCYVGITRARSTLYLTWCGSRSLYGGRAEDRQPSPLLAELPADVFTPPPTM 1078

Query: 701  TNSINKDEWIAY 712
              +  +      
Sbjct: 1079 QPATKRRPAHRQ 1090


>gi|319956827|ref|YP_004168090.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511]
 gi|319419231|gb|ADV46341.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511]
          Length = 685

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 97/601 (16%), Positives = 183/601 (30%), Gaps = 85/601 (14%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L E  +  Q+  +   D +   +  +     + +   +   +E  K++   L F DL++ 
Sbjct: 137 LYELYQLYQNAALGSFDEWFLERCPEQ-EVWMDIYVDICDEFERTKEEYGFLSFNDLLLQ 195

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               L++ +               +L+DE QDT+ +Q  +I +L             P +
Sbjct: 196 VKKRLEEGE---------RIPFQEVLVDEYQDTNTLQGALIDAL------------EPAS 234

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           LF VGD  QSIY+F+GA    +                   +  L  ++RS A IL + +
Sbjct: 235 LFCVGDYDQSIYAFNGANIANIATFTERYP--------DARVYTLRTNYRSGAAILALAN 286

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           +V    E           + ++       +   +L+EQ                 +    
Sbjct: 287 RVIQRNERIYPKELIVGKSGKNHP--PKLLVFEELFEQYQGIASQIAESATPHTYTAVIF 344

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
               S+  I A      I       T F   K+         +LV  R     I      
Sbjct: 345 RNNASADGIEASLRERGIPCRRKGGTSFFEAKEVKFLLDLASLLVNPRDMMAFIHIF--- 401

Query: 396 LKNDYKISVVGN-DRFILTDHLAIKDLMA-LGRFILS--QEDDLSFVCMLKSPLFNFSED 451
            +    I      + F    H    DL   L R  ++   + + +    L     +    
Sbjct: 402 -EYGRGIGTALAKEIFQCLMHFGEGDLRRGLLRPAITTLPKLNPNKNTQLGLFDDDLEIG 460

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
            + +      E E     + K         +  IK+      I +   P       +   
Sbjct: 461 SVTRFAQIEMEEEIRAHPLLKHPRLNQDSLRFFIKFYRFYRSIDRSQRPATILRKAIA-S 519

Query: 512 KGRQQFISRFGNEV-----IDVLDEFLNFTLRNEQNSYSSLQELISELEQYP-----PTI 561
              Q+ + +   +       ++ +E               L +L S   +         +
Sbjct: 520 PLYQEIVDQLSAQRGRLKSGEIDEEKRELARERILRKARLLTDLASHYREMSRFVNAMIL 579

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                +    V ++TVH +KGLE   V+++D     F ++                    
Sbjct: 580 GGGEMSEGEGVNLLTVHASKGLEFEDVYVIDLMDGRFPNR-------------------- 619

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                             +  + EE  RL YV +TRA  +L +        +K   + + 
Sbjct: 620 --------------KLMERTGSMEEERRLFYVAVTRAKSRLFLSMAKYDRVKKIDFKPSP 665

Query: 682 Y 682
           +
Sbjct: 666 F 666


>gi|226324828|ref|ZP_03800346.1| hypothetical protein COPCOM_02615 [Coprococcus comes ATCC 27758]
 gi|225207276|gb|EEG89630.1| hypothetical protein COPCOM_02615 [Coprococcus comes ATCC 27758]
          Length = 406

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 60/289 (20%), Positives = 97/289 (33%), Gaps = 70/289 (24%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE  KK+    DF+D+++    L +K+     I     +   +ILIDE QD + 
Sbjct: 165 AEVFRSYEHQKKELKKFDFDDMLVQCYALFRKKPE---ILQGWQKRFQYILIDEFQDINR 221

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+EVIR L                LF VGD+ QSIY F GA+P+ +L  K+        
Sbjct: 222 VQYEVIRMLAA----------PRYNLFVVGDDDQSIYGFRGAKPELMLYMKQEFP----- 266

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L +++RST  I     +V    +        S           G+   V +
Sbjct: 267 ---SLRTISLTVNYRSTEFITGAAARVILHNDTRFYKRVQSFR---------GRGQNVHV 314

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            E +  Q +                          A+ +   I   +             
Sbjct: 315 QEVLDEQEE--------------------------AQYVTEEIQKKLDQG---------- 338

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
           I+  +I VL R      +I+ +       ++I     D           
Sbjct: 339 IKPGEIAVLFRAAVQARMISEILSE----HRIPFEMRDYVTNFLQAFYC 383


>gi|154509555|ref|ZP_02045197.1| hypothetical protein ACTODO_02087 [Actinomyces odontolyticus ATCC
            17982]
 gi|153799189|gb|EDN81609.1| hypothetical protein ACTODO_02087 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1078

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 102/970 (10%), Positives = 256/970 (26%), Gaps = 90/970 (9%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            ++   L+ + +   +                +  +        T   +     +  +   
Sbjct: 80   RSALILAPDRTRADVLTPRAQALGPDAVRPVRTPASFAYQVVATWRTQRDVPLEGVELVT 139

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--RDRFNTYKM 119
               +  +L+    +      ++I  Q   +  P  + +L+       +        +   
Sbjct: 140  GAAQDQMLAEALESVDAPWPEDIGPQ--MRAMPAFRGELRNLVARAGEAGMDASSLSEAG 197

Query: 120  FKSTLASLTLAKYLNAHYEEAKKKNC------VLDFEDLIINTNDLLK--KRDVSAWIRY 171
             +        A  + A  EE  +++        +D   +     DL+   ++D       
Sbjct: 198  ARFGRPEWQGAGAIIAALEEGHERSPEYPRTLRVDLSRIQALAADLIDAWEQDAPKRGVQ 257

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                  + +++D++QD +     ++R+             +   + A  D   ++  + G
Sbjct: 258  APCPVPDVVIVDDLQDCTPSTLRLLRAC----------RGAGARIVAFSDSDVAVAGYRG 307

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             EP    R            G    + ++             V ++          S   
Sbjct: 308  GEPHLDRRLASALGVEIAELG---QVYDMSR----------AVRELARQACARIAQSGSP 354

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   +    +   V       SQ  +       S   +      +    + +  +  
Sbjct: 355  ARREAGVADDAPEGALVTHLGATPSQMGALIARALRSHHLHDGIDFSDQVVIVRSSSMVA 414

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILV------LVRKRKDTPLITFLTRFLKNDYKISVV 405
              S  +    +   G  R               LV     T       R    +  +   
Sbjct: 415  ETSRYLARGGVPVAGGGRAFDFATQPTTRLLLDLVTMPTGTSDTDVAQRRELAERLLPSP 474

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
                           +  L R + +     +     +S     +  D+            
Sbjct: 475  LV-------RADALAIHRLLRRLNAARAQAAEEAGGESAPIPLTAADLVSDPQTWRPFIE 527

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS--PHDFFTLILGAKKGRQQFISR--- 520
              E          +     ++    L  +    S  P +    +  A     ++ SR   
Sbjct: 528  QAEQAGGKRARAATMLARPLETAARLWELGMSGSVRPQERLWSLWEASGVAGEWRSRAIA 587

Query: 521  ------FGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYP--PTIKRAHSANHNE 571
                  + ++ +D +   L      EQ + + S     SEL                   
Sbjct: 588  SDDSSGWYDDQLDAVVALLRVADVWEQRNPAGSAVGFASELLAGSVPIDTISRVGVRPGG 647

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            V ++T   A G    VV L       + +  ++   +   L  D G          R  +
Sbjct: 648  VEVLTPAQAMGRHWQVVVLAGLQDGAWPNLRLRDRILRADLLADVGAGRVAVGEDGREEL 707

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            +       +++  ++  RL    +TR+   +       + +   S        +  +   
Sbjct: 708  IDSTR-AARRAVLDDEYRLFVAAVTRSRSIVH-AGAVRSEDAAPSVFFDLVAYLAGTHRE 765

Query: 692  DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE-----------ETIKQLMDEQKIP 740
            ++ V    +   ++    IA   +     + P + +           E I      + + 
Sbjct: 766  NDIVPVDPVEAPLSLSGHIADLRARAANSDEPADAQLAATLLALMAREGIASAQPHRWLG 825

Query: 741  KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-------DNQTFNRGLIIHKLLQVI 793
                     D     +L+PS  +      L   L+        N   + G ++H + +  
Sbjct: 826  AGGTPTSAQDYRGQIVLSPSQFERALACPLRWFLTTIGADAPSNAAASLGTLVHAVAEEH 885

Query: 794  FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                  +    + +   +          +        ++ N     +       EV+V  
Sbjct: 886  PHGTPEELTEALEARIEELGYNLDTWAGRVSDRHAREIVNN---LASYVVGVPGEVTVEQ 942

Query: 854  KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             ++   + + I GR+D++    + + + + KT          +      QL+ Y+  +  
Sbjct: 943  TVSSEVEGVTIRGRMDRLEQVDEGVRVTDLKTGK-SGYTKASVAEN--PQLAAYQMAM-- 997

Query: 914  SYPNKSLVCL 923
                + +   
Sbjct: 998  LASGEKVAGA 1007


>gi|164687187|ref|ZP_02211215.1| hypothetical protein CLOBAR_00828 [Clostridium bartlettii DSM
           16795]
 gi|164603611|gb|EDQ97076.1| hypothetical protein CLOBAR_00828 [Clostridium bartlettii DSM
           16795]
          Length = 739

 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 93/584 (15%), Positives = 183/584 (31%), Gaps = 81/584 (13%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
               L +  ++   Y++  K+N +LD++DL+I     L   D    ++ K      ++  
Sbjct: 194 NKGILKIISFIYTEYDKRLKQNGLLDYDDLLIYAYKTLCSDD---KLKEKFQNRYRYVFE 250

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREK 241
           DE QD++ IQ ++I+ + E+             L  VGD  QSI   F  ++PK      
Sbjct: 251 DECQDSNEIQGKIIKLICEE----------HNNLVRVGDVNQSITGTFSSSDPKFFKEFM 300

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +                E+ +S RS+ADIL + + +       Q +  D +      + +
Sbjct: 301 KE----------ADYCYEMNMSNRSSADILELANNL------VQFVCNDLSQIECRDALQ 344

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             ++ TV+  +      +         W   F+                      +    
Sbjct: 345 EIEIKTVEKGQGYKENPEPDKYQINALWYRTFEDE--------------------VNKTV 384

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            F  G K     K I +LV        ++ +         +               I ++
Sbjct: 385 KFVKGLKAKYPNKSIGILVPYNSQLSQVSKVLEQE----GLEFEELGPNSKNKRKIIDNI 440

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSED--------------DIFKICTQRHETETVY 467
             +  FIL  +D    +  L                            + +   +   + 
Sbjct: 441 AKIIDFILEPDDIEKLITALSDVFIKTDNKEGKSDFLNILRQYTTEEILYSDIKDKPLII 500

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +              ++++ +              F    L  K   +  +      V  
Sbjct: 501 DDKCDMYITFKVGLNYLVEILEHSTTKIDELIL--FIKERLDLKDEEKSLVDYLAFYVRY 558

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---SANHNEVRIMTVHTAKGLE 584
           +++E  N TL   +     L +  +++  Y   +             + +   H +KG+E
Sbjct: 559 LINEMPNITL---REILDILYDSRNKVFNYMIDVVYEINGYEPEPGSITVCNYHKSKGME 615

Query: 585 SPVVFLVDTGSQVFSHK-----HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
              VFL+      F           K ++     +   +            I  +     
Sbjct: 616 WDQVFLLQLNKFHFPDNINQKFQCDKWYLKDKYKNTEALIDNQIDLLVNGKITQNYYTKT 675

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
           K     E  RLLYVG+TRA + LI+   S  + E+  N++   +
Sbjct: 676 KIDVINEKIRLLYVGITRAKETLIMMGSSYQNEEESKNKKKMQE 719


>gi|237786044|ref|YP_002906749.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758956|gb|ACR18206.1| putative ATP-dependent DNA helicase II [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 705

 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 88/658 (13%), Positives = 179/658 (27%), Gaps = 161/658 (24%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
                   +    + +++    T    A+        +   +    +            +
Sbjct: 78  AAEEMRERLRIMGAGAVQ--ARTFHAAARKQLSYFWPRIAGDLPWRILDDKFRMVSRALR 135

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           +   +   +   D+  +++ S+   I   D      ++ +    +          YE+ K
Sbjct: 136 HTGIKAGKETIRDVIGEIEWSKARLISAADYEKRVEQLHREPPIAADKVADAYRVYEDIK 195

Query: 142 K--KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
              +   LDF+DL++     ++       +  +        ++DE QD + +Q  V+   
Sbjct: 196 ATPEGVFLDFDDLLLYVAGAMEN---LPEVAEEFRARYRSFVVDEFQDVTPLQQRVLD-- 250

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                           +  VGD  Q+IYSF GA+P  +LR  +  +          +++ 
Sbjct: 251 --------GWLGDRDDITVVGDANQTIYSFTGADPSFLLRFPQRFEN--------ATVVR 294

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L   +RST  ++ + +KV S   +       ST        R      V           
Sbjct: 295 LQRDYRSTPQVVGLANKVISQSRD-----GVSTADFTLEGQRPAGPEPV----------- 338

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                             +    S+ A  +A  I  +I +           +   +I +L
Sbjct: 339 ----------------FEEFDDESLEAAVVARRIRRLIESG----------VPPSEIAIL 372

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +               I           D   I   +A    + S         
Sbjct: 373 FRLNAQSEKFEHALDE----ANIPHHVRGGKSFFDRSEITGSLAALERLAS--------A 420

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            ++S   +  +  +  I           +           + +   + +  L        
Sbjct: 421 HMESGTIHTGDALVSDIKAVLARQGLSAQAPA------GERARERWESLSSL-------- 466

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
            +     I+ A  G               +   ++      Q++                
Sbjct: 467 -YHLIADIVHASPG-------------ADMPAVMSILRERAQSNRP-------------- 498

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                  A    V + T+H AKGLE   VF+V         +    +             
Sbjct: 499 ------PAGVEGVTLATIHAAKGLEWDAVFVVGLVEGTLPIRQAIALGS----------- 541

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                                 S  EE  RLLYV +TRA + L +       +  +++
Sbjct: 542 ----------------------SAIEEERRLLYVAVTRAREHLQLSWSLARESGGRAS 577


>gi|258514808|ref|YP_003191030.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778513|gb|ACV62407.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
          Length = 808

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 100/591 (16%), Positives = 177/591 (29%), Gaps = 111/591 (18%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              + + L+   +E K      +  DLI      L++      ++  +      + IDE 
Sbjct: 293 LRFILQRLHVELKEFKNMENKWEISDLIRE----LERLQEVQDLQKGLPIRF--LFIDEF 346

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT +IQ +++  L                LF VGDEKQSIY F GA+           +
Sbjct: 347 QDTDVIQVKLLLWL---------RKQLDCRLFVVGDEKQSIYRFRGAD-------YTAFR 390

Query: 246 KRATNAGQK-FSIIELPLSFRSTADILTVVDKVFSI-PENAQGLSEDSTTTIRHRSSRIG 303
           +     G +      L  ++RSTA +L  ++ +F                 ++  S    
Sbjct: 391 QLEEGLGSEQVMQYPLQKNYRSTAKLLVQLNPLFEQWNSKVIKFRYGPDDKLQSLSKDKD 450

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
            VG V                                                     I 
Sbjct: 451 GVGLVHYVT-------------------------------------------WAKLGEIL 467

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
            +   R    +   +LVR  +D   +T   + L         G  R      +A+++   
Sbjct: 468 KSLGGRWKVNESTAILVRSNQDVQDLTEWCQSL----GFFCDGEVRGNFYRTVAVREFYI 523

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           + R +++Q     +  +  S     +  +   +     E   + +  Q   +        
Sbjct: 524 MLRVLINQNLQRDYFALHHSSYGANTLSNYIVLKEFNAEKRFLADLFQAQPD-------- 575

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-------------------- 523
             +       +A           I+G  +  + +  RF +                    
Sbjct: 576 -WQQWQAYREMANGYPVLQVLKRIIGEIEPARVYARRFIDKMRKLQPDQDRDLLLKEAET 634

Query: 524 ---EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR------AHSANHNEVRI 574
              E    LD  L    +   ++  +   +   +     T         +     +  R 
Sbjct: 635 CKIEYQLNLDYLLYILQKYFSDTVMTWHGIEQFIRLKMQTDTDVLPMTASPEERSHRFRC 694

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MTVH AKGLE   V L  T  Q       + +    S +   G  + +  +  RN+    
Sbjct: 695 MTVHKAKGLEFDHVILPVTDHQFLRDDRQQVLLREESGSYIMGYQLNMQGNVFRNSYWEQ 754

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
           L          E  RLLYV +TRA   L +  H      + +    W D++
Sbjct: 755 LKSSENTEIVAEETRLLYVALTRAKKNLYV--HVKDKLARANTVNCWSDLL 803


>gi|323978469|gb|EGB73552.1| UvrD/REP helicase [Escherichia coli TW10509]
          Length = 632

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 98/669 (14%), Positives = 196/669 (29%), Gaps = 122/669 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + +E  E +           ++ I+      +E+   T +   + L    + Q   E F 
Sbjct: 60  AADEMLERLDDGSENRDRIWIATIHSVAQRVLESYGYT-IGLPKELHIFERDQDRMEVFL 118

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                              +E   +   + + L        ++         F S     
Sbjct: 119 HSLREQGVNIDEYLDVEDVREKRNREKVISQYLNVFSIIKRELLTEDEVKIKFSSNPRIW 178

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+ A  ++  +DF+D+++  + +L  ++  A I     ++   + +DE QD
Sbjct: 179 N----IYQDYQSALLESGGVDFDDILLYAHKILLNQESVARI---YQKKYVALFVDEAQD 231

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            +  Q+E I+ L  D           + +  VGD  Q IY F+G+         +   K 
Sbjct: 232 LNRAQYEFIKVLCGDKI---------KDVMMVGDSDQMIYGFNGSSSDY---FIKSFVKD 279

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            T          L  ++RS+  ++ + +K+                              
Sbjct: 280 FT-----PKTYCLNENYRSSKAVIELANKL------------------------------ 304

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                          N   + + S+     +ES A  +   I   I N+     I  +  
Sbjct: 305 -------KPNSQVGVNAALDGYKSFNALPDEESEAIWVCDSI-QHILNLKRHPEIEGD-- 354

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG--NDRFILTDHLAIKDLMALG 425
              I    I+V+ R R     +    +       I      +DR      L  K +    
Sbjct: 355 ---IDCSKIVVIGRNRFVFKAMESELK----KRNIPYFLKRSDRNESPVSLIGKIVDLAI 407

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  ++ +D +    + K  L     +    +     +   VY  I+K +N        V+
Sbjct: 408 RVKVNPKDWVDGKRLYK--LIGLELNPESDVTYDISK---VYADIKKSSNLDKDLISLVL 462

Query: 486 KYIHELIHIAQFCSPHDF---FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            +I  +                 L+      +           I  +++  +   R ++ 
Sbjct: 463 AHIDHMSVDTPNILKFCLDIKSELVSLGANTKDSAKEDDIATGIKDIEQLQSMWTRFKRK 522

Query: 543 S-YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +L    + L              +N + + TVHT KGLE  +VFL+     VF   
Sbjct: 523 GLGDNLSSFRNALALGQL----NDDTLNNGIMLSTVHTMKGLEKDIVFLIGMCEGVFPD- 577

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                              +   K   +E     +V +TR+   
Sbjct: 578 ----------------------------------YRAKSKVELDEERNNAFVAITRSRRW 603

Query: 662 LIICKHSNT 670
           + +      
Sbjct: 604 IFVTYPEKR 612


>gi|289829854|ref|ZP_06547369.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 651

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 79/617 (12%), Positives = 190/617 (30%), Gaps = 93/617 (15%)

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
           G   + +    R ++A DI VLVR R++  LI      L      SV  ++R  + + L 
Sbjct: 6   GDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL---AIPSVYLSNRDSVFETLE 62

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            ++++ + + +++ E + +    L + +   +  DI  +    +  E  ++ + +  +  
Sbjct: 63  AQEMLWVLQAVMAPERENTLRSALATSMMGLTALDIETL----NNDENAWDAVVEEFDGY 118

Query: 478 ISKF--QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
              +  + V+  +  L       S  +    +L    G ++            + E L  
Sbjct: 119 RQIWHKRGVMPMLRAL------MSARNIAENLLATAGGERRLTDIL------HISELLQE 166

Query: 536 T---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
               L +E      L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L  
Sbjct: 167 AGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIVTIHKSKGLEYPLVWLPF 226

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                   +                      ++    +   + I   +     E  RLLY
Sbjct: 227 ITHFRVQDQAFYHDR-------------HSYEAVLDLSHAEESIALAEAERLAEDLRLLY 273

Query: 653 VGMTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
           V +TRA     +         S+   E   +Q     ++      D    +  +    ++
Sbjct: 274 VALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGEPMDAAGLRACIEALCDE 333

Query: 707 DEWIAYEWSTH--HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEP 754
           D       +T     +       E   + +          +              D+   
Sbjct: 334 DIVCRTPGNTDNDRWQIAAASHAELSARTLQRLLYDSWRVTSYSGLQQRGHSVAQDLIPR 393

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
             ++ + +    +    +     +  + G  +H L + +        +           +
Sbjct: 394 LDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQPIDPQWVQEKLELSGFE 453

Query: 815 LWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV----SVSGKINCPKKDIIIS-- 865
                     L ++  +  N     ++     +   E+     ++  +   + D +I   
Sbjct: 454 TRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLPIAQPLTAGELDALIRRY 513

Query: 866 --------------------GRIDQISISQQNIFIFEYKTHHHVPQEIE---------HI 896
                               G ID +   +   ++ +YK++                   
Sbjct: 514 DPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWLGEDSAAYTQTAMAAAMQ 573

Query: 897 PYTHIAQLSIYEKILKD 913
            + +  Q  +Y   L  
Sbjct: 574 AHRYDLQYQLYTLALHR 590


>gi|254424367|ref|ZP_05038085.1| UvrD/REP helicase subfamily [Synechococcus sp. PCC 7335]
 gi|196191856|gb|EDX86820.1| UvrD/REP helicase subfamily [Synechococcus sp. PCC 7335]
          Length = 786

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 92/604 (15%), Positives = 171/604 (28%), Gaps = 70/604 (11%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L + L +         +            A + +A  L AHY+       ++D++D+I+ 
Sbjct: 212 LPDALMEIAQRMTVRLEEDAV------DYAVVVIAAGLYAHYQTLLSSQGLIDYDDMILA 265

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               L + D    IR      I  I  DE QD+S +Q +++ +L  D        + P  
Sbjct: 266 ALKTLAEPD----IRQLWQSRIFAIFEDEAQDSSPLQTQLLEALAGDA----ADPTRPLN 317

Query: 216 LFAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           L  VGD  Q+I S F  A+P    +      +          +  +  + RS   I+   
Sbjct: 318 LVRVGDPNQAINSTFTPADPVFFNQFCDACAQ----GESGGKLATIEQAGRSCDRIMAAA 373

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + V S        +   +                ++            NP          
Sbjct: 374 NFVLSWVNRHSPSAPFRSQ---------------EILPVGPGDPQPDANPAPIGGGVEIV 418

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                 ++    +++A  IS +   ++              + VLVR+ +    +  +  
Sbjct: 419 RPKTVINSV---QQLAKRISAIYQENSEL-----------TMAVLVRESRQGKFVREILE 464

Query: 395 ------FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                 F   +  I +          +   ++++ L +FI       +    L+  L + 
Sbjct: 465 DPERLGFDFGETGIELYDVG-ERDRQNHVPREMLTLLQFIERPHSPDNIKAALRV-LVSR 522

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI- 507
                  + +     E              S  +   +Y   LI        +     + 
Sbjct: 523 QLIPTQDLNSLATNPEQFLYPGPLDEPPDDSAARKARRYCAALIRARLELPAYHLIPFLG 582

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
           L  +  + +  +              + TL     +   L                   A
Sbjct: 583 LTLQYNQSELATADKLAARIAQQTLEDSTLSAMLGALQELLG-SESFRAIEAENAELQYA 641

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI------------KKMHIMPSLNDD 615
               + IMT+H AKGL+  VV L     +    +                      L   
Sbjct: 642 QPGRLTIMTMHKAKGLDWDVVCLPFLHKRNIPGESWVPPQTQFLGKFSLDEVARAQLRTY 701

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                   +  +    + D  +      + E  RLLYV MTRA   L I           
Sbjct: 702 THGVYAQDRKPAPIPNIEDAWQQATNLKRAEEFRLLYVAMTRAKKLLWISAAKQAPFTWS 761

Query: 676 SNQR 679
               
Sbjct: 762 KPSS 765


>gi|57864914|gb|AAW57088.1| ATP-dependend DNA helicase [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 622

 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 83/564 (14%), Positives = 170/564 (30%), Gaps = 60/564 (10%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            L +   L   YE+  +    +D++D+ + +   L+       IR +  QE   +  DE 
Sbjct: 52  ILGIGAGLYKQYEKVMRSLDFIDYDDITLASLRALEN----TNIRNRWQQETFAVFEDEA 107

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRIN 244
           QD+S +Q ++I  L +D     N   +P  L  VGD  Q+I S F  A+P    R  +  
Sbjct: 108 QDSSPLQEKLINLLAQD----SNHSDNPPNLIRVGDPNQAINSTFTPADPVYFNRFCKH- 162

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                    + ++  +  + RS+  I+   +       +       ++  I    +    
Sbjct: 163 ------CEDQNNLAIMNQAGRSSKVIIDAANFTLRWVNSQWVNEIKNSQKIESNKTS--- 213

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                L ++ +       +  +++          +       + I  T+  +I    I  
Sbjct: 214 ---FDLTKEHIPFRQQDIHIVKKNDLELNPKSVGKGLEIYTPKDIYTTVK-LIEKRVIKL 269

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                   +    +LVR+ + +  +      L   + I +           +  ++++ +
Sbjct: 270 FQNNPEHSS---AILVRENRQSRFLVENLAHLSKAHGIKIYEVGEVERFSKIP-EEILKI 325

Query: 425 GRFILSQEDDLSFVCMLK--SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
            RFI            L+        +  D+  + T        + Y          +  
Sbjct: 326 LRFIDRPHSAEYSKSALEILEKRDLIATQDLNTLVTYPEN----FLYPNPLIKEQKQEVL 381

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-------QQFISRFGNEVIDVLDEFLNF 535
               Y   L+        +     +    K         Q+   R   ++I+  +     
Sbjct: 382 QARHYCCNLLRAKLELPSYQLIPFLGMTLKYTGSELATVQKLSDRINRQIIEN-NSLKAT 440

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +     S++       +             N++ I+T+H AKGL+   VF+     
Sbjct: 441 IKTLQ--EIVSVEGF-----EGVEEDNEERYTKANQLTIITMHKAKGLDWDYVFIPFLHK 493

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQS------------KSRNNIVSDLIKHLKKST 643
            V               +                                   +   +  
Sbjct: 494 DVLPGNPWVPTAAKFLGDFAFAEVARAQIRAIVHSQHITQGLIREIPEPKKAWEEAAQLK 553

Query: 644 QEEYNRLLYVGMTRASDQLIICKH 667
           + E  RLLYV MTRA   L +   
Sbjct: 554 KAEEYRLLYVAMTRAKRLLWMSAA 577


>gi|325973160|ref|YP_004250224.1| DNA helicase II [Mycoplasma suis str. Illinois]
 gi|323651762|gb|ADX97844.1| DNA helicase II [Mycoplasma suis str. Illinois]
          Length = 744

 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 93/554 (16%), Positives = 180/554 (32%), Gaps = 91/554 (16%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + K +  +Y++   +  + DF+DLII  + L+ +  +   I   I  +   IL+DE QD
Sbjct: 225 KVLKNVFNNYQKKLDEKKLFDFDDLIIYFHYLVSRNPIKKEI---ISSKFEKILVDEFQD 281

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q  +I  ++          ++ + +  VGD  Q+IY F GA P+     K      
Sbjct: 282 MNFLQLLIIAEIS----------NNKKNILFVGDPNQAIYGFQGAYPEIFNYFK------ 325

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE----DSTTTIRHRSSRIG 303
            TN         L  ++RST +IL    K+ +  +     ++    + +    +      
Sbjct: 326 -TNIDLTTIFFNLSQNYRSTKNILDFSHKLITKNDQKGIFNQMFTENESGKKVNLLVNSK 384

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
           + G +     ++   ++      +        +  +       ++    +         +
Sbjct: 385 RGGLMNRVYSIIKNLEADGVDLNQIAIISRTHMETKYLRRWFMKKGLKFLDFNFSKYIFW 444

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
           +     +I     L+ +R    +  I F+  F    ++I     + F+        D+  
Sbjct: 445 NYESYFLI----CLISLRFSGSSFAIKFILEFYFKKWEIP----EYFLQQIEDYSPDVEK 496

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-----QRHETETVYEYIQKFANCGI 478
               + S   +  +     SP    S   I K+        R   +        + N   
Sbjct: 497 ALNDLTSSNFENKW----TSPEDKGSIAKIRKLWRLIKEELRKNKQQGRNEEVDYVNNHF 552

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            K  +    + E I                      Q+ I +     ID + +F      
Sbjct: 553 EKIINSQDELKEWIKEHINSPL--------------QKEIQQKKWVCIDNISQFYKVMSF 598

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              ++   LQE++  L         +H    + +   TVH AKG E   VF+++     F
Sbjct: 599 YSNSNVFKLQEIVETL-LVYVKHFVSHVTESSYLNFSTVHGAKGCEFDYVFILNLIENKF 657

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                     +   EE  R+L+VGMTRA
Sbjct: 658 PKH-----------------------------------YAQTQQDLEEERRVLFVGMTRA 682

Query: 659 SDQLIICKHSNTSN 672
             +L +     T N
Sbjct: 683 KKELWLVSDLPTKN 696


>gi|313667286|ref|YP_004049687.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
 gi|313153917|gb|ADR37767.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977]
          Length = 638

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 98/694 (14%), Positives = 192/694 (27%), Gaps = 142/694 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +  +  P  +      +      +           +   +          F 
Sbjct: 52  AAEEMRQRVLAEDVPAKHVWAGTFHSLAFQILRQFPEAGG--YEGFPEVLTPNDELRLFR 109

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L +  L Q              +    L + L   +    +        +  +S     
Sbjct: 110 RLWAELLDQDLD----------AELRRKLVKALGFFRKARAEEALEGWAARAGESLELDA 159

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + L   ++  K++  +  F+DLI   +  L  +DV  W     D+    +++DE QD
Sbjct: 160 EMLEALMISFQLRKREAGLASFDDLIEGASRALGDKDVRKWA----DRRFPFLIVDEYQD 215

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS  Q   + +L                L  +GD  Q+IY + GA  +   R +    + 
Sbjct: 216 TSRAQETFLAALM---------PGEAPNLMVIGDPNQAIYGWRGAGSRTFERFQARYPQA 266

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    +  L  ++RST  +L + ++  +                R    +      
Sbjct: 267 V--------LYPLRKNYRSTRAVLRLAERAIARL-----YRSGQEAYYRLEGVKEEGEPP 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V L                              +A+  A  +A  ++  + +        
Sbjct: 314 VLLTPP---------------------------NAAAEATDVAREVARAVASG------- 339

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I VL R       +      L     ++        L++   +K L+ L + 
Sbjct: 340 ---VPPEEIAVLARSSMQLAGVEDRLARL----GVATRLLGGIRLSERREVKTLVQLLKA 392

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA------------- 474
             S   + + V  ++  +    E  + ++         V   +   A             
Sbjct: 393 AWSLH-ERALVDFIEEAVPGLGERTLTRVEHAARPYNLVDRIMNDGAFVRGFSTRVQQGL 451

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK--KGRQQFISRFGNE--VIDVLD 530
               +  Q        +   A      +F   + G        +   +  NE      L+
Sbjct: 452 FMTRTLLQLARATFEGVTGEAFAERFREFAQDLYGELLPGYLARIGKQGPNEEARRRHLE 511

Query: 531 EFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            F+       +      L +L++ L             +   V + TVH  KGLE  VVF
Sbjct: 512 RFVATVEAFAREEAEGGLDDLLARLA-------FLEQQDGPAVTLGTVHAVKGLEFEVVF 564

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +V      F                                           S  EE  R
Sbjct: 565 VVGMVEGAFP-------------------------------------ILADDSDPEEERR 587

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
           L YV  TRA  +L +   +     K      + +
Sbjct: 588 LFYVAATRAKRRLYLSAPTYGPRGKILQPSRYLE 621


>gi|302308651|ref|NP_985640.2| AFR093Wp [Ashbya gossypii ATCC 10895]
 gi|299790729|gb|AAS53464.2| AFR093Wp [Ashbya gossypii ATCC 10895]
          Length = 1131

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 71/457 (15%), Positives = 146/457 (31%), Gaps = 81/457 (17%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           + N +   +  ++ +     K  +    +++    + + +K          +    Y+E 
Sbjct: 145 RANKVNLCLPNRNGEWALADKAIRKNISRLKAEALSPEAYKELDTHDEALYHFYRSYQEE 204

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
             +   LD++DL+  +  LL           +    I H+++DE QDT+ IQ E++  L+
Sbjct: 205 LLRQGGLDYDDLLFYSFKLLSTN--------RCWSHIKHVMVDEFQDTNSIQLELMYLLS 256

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                    H S   +  VGD  QSIY+F  A  +         ++       ++  + L
Sbjct: 257 R------GRHQSCEGVTVVGDPDQSIYAFRSALARN-------FEEMIQKCPIEYGHVVL 303

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RST +IL   + V     + +         ++ + S   +                
Sbjct: 304 EENYRSTQNILDTSEHVIKQQSDGRTFRL----PLKAQFSYDLKP--------------- 344

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                   +  + D   +          I   I  +             +    D  +LV
Sbjct: 345 -------VYMKFPDRFLEGP-------TICKEILYL--------KAIPGLFSYDDFAILV 382

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R+R+    I  L R L  D++I           +    K ++ L + + S  D  + +  
Sbjct: 383 RQRRQ---IEPLERAL-IDHRIPYKIVKSVSFWERKETKAILDLIKIVCSDVDRYAIIRS 438

Query: 441 LKSPLFNFSEDDIFKICTQRHETE-----------TVYEYIQKFANCGISKFQHVIKYIH 489
           LK P     +  I +      E             +      K ++ G    +  I  + 
Sbjct: 439 LKYPSKGLGDVAISQFEKAFDEEPNRPPLEILRLFSNTAKGDKLSSKGRLAVRQFIALMD 498

Query: 490 ELIHIAQFCSP----HDFFTLILGAKKGRQQFISRFG 522
           +   I             F  +  A   + +F+    
Sbjct: 499 KAREICDENPTLSTREQLFDYLYDASGLKNEFLFEDD 535



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 5/144 (3%)

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           L  F+NF            + L                A +  V I T+H +KGLE P+V
Sbjct: 643 LRRFINFINLYTTTEAIDPKGL-----TKAQQQANELRAKNGVVTITTIHGSKGLEWPIV 697

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F+      +    +          +D+ G      +  + +       K       +E  
Sbjct: 698 FIPGCVEGIIPCVYANSKDEESDDDDENGEGHETEEIPNNDANSPKKNKSKANEGLDEER 757

Query: 649 RLLYVGMTRASDQLIICKHSNTSN 672
           R+ +V +TRA   L I    NT  
Sbjct: 758 RMFFVALTRAKYLLYISATENTER 781


>gi|254459347|ref|ZP_05072768.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
 gi|207083960|gb|EDZ61251.1| UvrD/REP helicase [Campylobacterales bacterium GD 1]
          Length = 694

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 113/743 (15%), Positives = 209/743 (28%), Gaps = 181/743 (24%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGN--PTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           K    +         K V+  ++ G       +  + L      +   E  +L  S F  
Sbjct: 60  KAAAEMVERVAEYFGKDVASKIDAGTFHAVSYRWLKKLDGRVVLKQQRELKTLFRSVFEK 119

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           + F      IT        DL       Q+  ++        + +        +   +  
Sbjct: 120 RSFDHIGAEITPYGGNYLYDLYSFY---QNTELEKHFEDWIIETYPEHELFAIIYADVVD 176

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            +E  KK+   L+F DL++N  D+ K +D+              +L+DE QDT+ +Q  +
Sbjct: 177 EFEALKKEYGFLNFNDLLLNFRDICKTKDL----------GYKEVLVDEYQDTNALQGTL 226

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I ++            +P +LF VGD  QSIY+F+GA+   +                  
Sbjct: 227 IETM------------NPPSLFCVGDYDQSIYAFNGADISIIGSFATKYP--------DA 266

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
           ++  L  ++RST  IL++  KV    E       + T     ++                
Sbjct: 267 TVHTLTKNYRSTIPILSLATKVIEHNERIYPKQLEVTRNQPSQA---------------- 310

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                   P   ++   FD              IA  I                    ++
Sbjct: 311 --------PTLLAYDELFDQY----------HAIAAKIRA-------------TQTPHEE 339

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           I V+ R       I    R L     I           D   +K ++     ++++ D +
Sbjct: 340 IAVIFRNNSSADGIEVGLREL----DIPCKRKGGTSFFDSREVKAILDFYTLLVNESDMM 395

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC-------GISKFQHVIKYI 488
           SF+  L             +I            +   +A            K  H +   
Sbjct: 396 SFIH-LFEFARGIGSAMAKEIYIALKTLGHGSIFYGLYAPDESINNPFEKRKLNHQLGLF 454

Query: 489 HELIHI------------------------------AQFCSPHDFFTLILGAKKGRQQFI 518
            + + +                              A F          L   K  +  +
Sbjct: 455 DDFLELGAVGKFAKLGFEAKFMKNPILKHPKLTKDSATFLHDFYLLYRDLKGIKQPRTVV 514

Query: 519 SRFGNEV-----IDVLDEFLNFTLR---NEQNSYSSLQELISELEQYPPTIKRAHSAN-- 568
            +           D L            +E+    SL  +  ++       K     +  
Sbjct: 515 KKIAASAIFKYIADHLSNKRAQLKDGSIDEKQKTESLTRITRKMMLLEELSKPYVEHDRF 574

Query: 569 -------------HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                           V +++VH +KGLE   V+++D     F ++              
Sbjct: 575 LNAMILGSSDLTQGEGVNLLSVHASKGLEYKEVYIIDLMDGRFPNR-------------- 620

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                   +  + +E  RL YV +TRA D L +        +K 
Sbjct: 621 --------------------KLMQRGGSLDEERRLFYVSVTRAKDILYLSYAKYDKVKKI 660

Query: 676 SNQRTWYDMVYDSFHNDERVKKI 698
           +   + +         DE  + +
Sbjct: 661 NFVPSQFLYEAGLVPKDEAYQAL 683


>gi|325989603|ref|YP_004249302.1| DNA helicase, UvrD type [Mycoplasma suis KI3806]
 gi|323574688|emb|CBZ40344.1| DNA helicase, UvrD type [Mycoplasma suis]
          Length = 744

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 93/554 (16%), Positives = 180/554 (32%), Gaps = 91/554 (16%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + K +  +Y++   +  + DF+DLII  + L+ +  +   I   I  +   IL+DE QD
Sbjct: 225 KVLKNVFNNYQKKLDEKKLFDFDDLIIYFHYLVSRNPIKKEI---ISSKFEKILVDEFQD 281

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q  +I  ++          ++ + +  VGD  Q+IY F GA P+     K      
Sbjct: 282 MNFLQLLIIAEIS----------NNKKNILFVGDPNQAIYGFQGAYPEIFNYFK------ 325

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE----DSTTTIRHRSSRIG 303
            TN         L  ++RST +IL    K+ +  +     ++    + +    +      
Sbjct: 326 -TNIDLTTIFFNLSQNYRSTKNILDFSHKLITKNDQKGIFNQMFTENESGKKVNLLVNSK 384

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
           + G +     ++   ++      +        +  +       ++    +         +
Sbjct: 385 RGGLMNRVYSIIKNLEADGVDLNQIAIISRTHMETKYLRRWFMKKGLKFLDFNFSKYIFW 444

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
           +     +I     L+ +R    +  I F+  F    ++I     + F+        D+  
Sbjct: 445 NYESYFLI----CLISLRFSGSSFAIKFILEFYFKKWEIP----EYFLQQIEDYSPDVEK 496

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-----QRHETETVYEYIQKFANCGI 478
               + S   +  +     SP    S   I K+        R   +        + N   
Sbjct: 497 ALNELTSSNFENKW----TSPEDKGSIAKIRKLWRLIKEELRKNKQQGRNEEVDYVNNHF 552

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
            K  +    + E I                      Q+ I +     ID + +F      
Sbjct: 553 EKIINSQDELKEWIKEHINSPL--------------QKEIQQKKWVCIDNISQFYKVMSF 598

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              ++   LQE++  L         +H    + +   TVH AKG E   VF+++     F
Sbjct: 599 YSNSNVFKLQEIVETL-LVYVKHFVSHVTESSYLNFSTVHGAKGCEFDYVFILNLIENKF 657

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                     +   EE  R+L+VGMTRA
Sbjct: 658 PKH-----------------------------------YAQTQQDLEEERRVLFVGMTRA 682

Query: 659 SDQLIICKHSNTSN 672
             +L +     T N
Sbjct: 683 KKELWLVSDLPTKN 696


>gi|253582808|ref|ZP_04860028.1| UvrD/REP helicase [Fusobacterium varium ATCC 27725]
 gi|251835384|gb|EES63925.1| UvrD/REP helicase [Fusobacterium varium ATCC 27725]
          Length = 617

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/533 (14%), Positives = 168/533 (31%), Gaps = 136/533 (25%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y+  KK+  + DFEDL       LK           + ++  +I++DE QDT+ +Q + +
Sbjct: 203 YKRFKKEFQIFDFEDLTEKVLKKLKSD---KNFLKMLREKYKYIVVDEYQDTNSVQRKFL 259

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           ++L                + AVGD+ QSIY F GA+ K +LR  +              
Sbjct: 260 KTLVG----------IEGNIMAVGDDYQSIYGFRGADFKNILRFGKDFPNS--------K 301

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           +I+L  ++RS+ +I+  ++ +                                L +   +
Sbjct: 302 MIKLERNYRSSDEIIKYINGI----------------------------SESFLLKYNKN 333

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              +  N +     S+ +   Q          I   I  +              +  ++I
Sbjct: 334 TRGTMKNGENPHIISFLNEEKQG-------EFICRKIEELKEKG----------VPYEEI 376

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGN-DRFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R +     I      L    +I      D+           L    + +    D  
Sbjct: 377 AILYRNK----YIIHKLEKLMKKKEIPFNLQLDKENFFGSP----LDIYLKILEVWNDKE 428

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           +              +++ +   + +    +    ++ ++            ++++I I+
Sbjct: 429 NI----------LKWEELVRRLPKSYLYSVLDIVKRRESDD---------ALLNKIIMIS 469

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
              S +    ++   +K   + +        + ++ F        +N+    ++L + + 
Sbjct: 470 NKISHYSIDEILDKCEKLTFEILKIKTTFSREEVNFFKTV-----KNNIKKAEDLETYIM 524

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
           +    +         ++ I++VH++KGLE   VF+      +F                 
Sbjct: 525 EVKNILNAEKKITKGKISILSVHSSKGLEWEAVFIPTLLEGIFPSGIG------------ 572

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                    +   EE  RL YV  +R    L +    
Sbjct: 573 -------------------------EKNIEEEKRLFYVACSRGKKYLYLLYPE 600


>gi|156303122|ref|XP_001617471.1| hypothetical protein NEMVEDRAFT_v1g226051 [Nematostella vectensis]
 gi|156194023|gb|EDO25371.1| predicted protein [Nematostella vectensis]
          Length = 313

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/368 (15%), Positives = 113/368 (30%), Gaps = 72/368 (19%)

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            AVGD+ QSIY + GA  + +                    I L  ++RST  IL+  + 
Sbjct: 1   MAVGDDDQSIYGWRGARIENIQNLPEHFP--------GAETIRLEQNYRSTQTILSAANA 52

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V +      G                      +LW           + ++ S  S F+  
Sbjct: 53  VIANNRGRLGK---------------------ELW-------TDGQSGEKISLYSAFNEQ 84

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +       AR I   I   +    +            +  +L R    + ++       
Sbjct: 85  DE-------ARFIVGQIQRWMEHGNLR----------SESAILYRSNAQSRVLEEAL--- 124

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                +           D L IK+ +A  R + +++DD +   ++  P        +  +
Sbjct: 125 -IRAGVPYRIYGGHRFYDRLEIKNALAYLRLVTNRDDDTAMERIINVPTRGIGTRTLDVV 183

Query: 457 C-TQRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               R E  +++         +K     +S  Q  +  I++L       +  +     + 
Sbjct: 184 RDQARQENISMWRAANEVVEYKKLPARALSALQAFLDLINQLDTDTTGMTLQEQTEHAIE 243

Query: 510 AKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQ-----NSYSSLQELISELEQYPPTI 561
                +      G +     + L+E  +   +  Q     +    + EL + L+Q     
Sbjct: 244 RSGLIEHHKKEKGEKAQSRIENLEELSSAAKQFSQQWEANSEAEDVTELSAFLDQAALDA 303

Query: 562 KRAHSANH 569
             A + +H
Sbjct: 304 GDAQAEDH 311


>gi|320008686|gb|ADW03536.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 740

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/614 (13%), Positives = 162/614 (26%), Gaps = 160/614 (26%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              K  +           + A YE+ K+   V+DFED+++ T  +L+       I   + 
Sbjct: 171 AVAKTQRDAPRDPAELSQIYAMYEQLKRDRSVIDFEDVLLLTVGILQD---RHDIADHVR 227

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++  H ++DE QD S +Q  ++     D             L  VGD  Q+IYSF GA P
Sbjct: 228 RQYQHFVVDEYQDVSPLQQRLLDLWLGD----------RDDLCVVGDAGQTIYSFTGATP 277

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L  +              ++++L   +RST  ++ + + +           + +   
Sbjct: 278 DHLLNFRTR--------HPDATVVKLVRDYRSTPQVVRLANGLLGQARG-----KAAEHR 324

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           +   S R      V                             + +     A   A  I 
Sbjct: 325 LELVSQRDKGPEPV---------------------------YTEYADEPAEAEGTARRIR 357

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           ++I             + A +I VL R    + +          D  +           D
Sbjct: 358 DLIAAG----------VPAGEIAVLYRVNSQSEVYEQAL----ADAGVPYQLRGAERFFD 403

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              +++     R                        D +                 + + 
Sbjct: 404 RPEVREAGVALRGAA----------------RAGGNDSLLDGADDLPSEVRAVLSTKGWT 447

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
           +   +    V      L  + +     +                                
Sbjct: 448 SKPPTGSGAVRDRWESLAALVRLAEDFE-------------------------------- 475

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                +    ++L +L++EL++               V + ++H+AKGLE    F+V   
Sbjct: 476 -----QAKPGATLSDLVAELDERAAAQHAPTVQG---VTLASLHSAKGLEWDAAFVVGLT 527

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +                                     +         EE  RLLYVG
Sbjct: 528 EGMMP-----------------------------------IAYAKTDEQIEEERRLLYVG 552

Query: 655 MTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           +TRA   L +      +           + + +                  I++      
Sbjct: 553 VTRARFHLSLSWALSRSPGGRGNRRATRFLNGLRPGSAAVGPRGGAGGGGGIDRGSRTGT 612

Query: 713 EWSTHHPENTPLER 726
             +       P  R
Sbjct: 613 SGAGAETPARPARR 626


>gi|310831416|ref|YP_003970059.1| putative UvrD/REP helicase [Cafeteria roenbergensis virus BV-PW1]
 gi|309386600|gb|ADO67460.1| putative UvrD/REP helicase [Cafeteria roenbergensis virus BV-PW1]
          Length = 884

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 74/516 (14%), Positives = 149/516 (28%), Gaps = 124/516 (24%)

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
           ++DF D++      LK       +  K++  I+++  DE QD + IQ ++++ L      
Sbjct: 213 LIDFNDVLPQFYLKLKNN-----MLNKLES-IDYLFFDEYQDVNPIQNQILKEL------ 260

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
               ++    L  VGD +QSIYSF G+E   +   +              +   LP ++R
Sbjct: 261 ----NNRGIHLMVVGDPRQSIYSFRGSEVSFINNFESEFP--------SATRFILPYNYR 308

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           S  +I+   + +F                             +   +        +    
Sbjct: 309 SGTEIVEFCNNIF-----------------------------IPKCKMEAKNDKIKKPEV 339

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
           +             +   +  + +  +I                    K++ +L RK K 
Sbjct: 340 KIF-----------TEFKLEKKWVIDSIEEKHKQGCAL----------KNMTILTRKNKI 378

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              +           KI  + N    L +   IKDL++        +    +  +L    
Sbjct: 379 LSHLETDL----IRRKIPYLINGGVSLLEKAHIKDLISFMTLFFHSKQKFHWKRILM--- 431

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
                     I       ++              K    +  + + +   +  S  +   
Sbjct: 432 ----LHQKISIKITNKILDSCENLPGDLEKYQYDKNLESLFNLSQFMKKVKDFSLKNLSI 487

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            I+          +    E         +   +   +S          LE+       A 
Sbjct: 488 EIINYLSDIGVNYNYPLEERETD----YSAISQFLNDS----SSFYKFLEEIYLERTLAA 539

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             N + + I + H +KGLE  VV+L+        H                         
Sbjct: 540 PNNEDYLEINSFHGSKGLEWDVVYLMGLNGSEIPH------------------------- 574

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                   +     + ++ EE  RL +V  +RA  +
Sbjct: 575 ------YHNAFFIDENNSIEEERRLFFVACSRAKRE 604


>gi|125972730|ref|YP_001036640.1| UvrD/REP helicase [Clostridium thermocellum ATCC 27405]
 gi|256004889|ref|ZP_05429863.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|125712955|gb|ABN51447.1| UvrD/REP helicase [Clostridium thermocellum ATCC 27405]
 gi|255991199|gb|EEU01307.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|316941036|gb|ADU75070.1| UvrD/REP helicase [Clostridium thermocellum DSM 1313]
          Length = 743

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 89/609 (14%), Positives = 180/609 (29%), Gaps = 100/609 (16%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           + L  A  +   Y+   K    LDF+D++ N   +L+  +    +  K  ++   +  DE
Sbjct: 193 SILAWASDIYEIYDRRLKIGGYLDFDDMLYNAKKMLETDEH---LLEKYRKKYTFVCEDE 249

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY-SFHGAEPKRVLREKRI 243
            QD++ IQ E++  +                L  VGD  Q+I  SF  ++          
Sbjct: 250 AQDSNYIQNEILTLIA------------NGNLLRVGDSNQAICGSFSSSDFTLFKNFCEA 297

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       ++  +  S R+T +I+ + +                 +   H      
Sbjct: 298 ---------PDTTVYSITQSSRNTREIIDLANFFVK---------YVRESHPVHECRDSL 339

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
               ++   +   + +   +        +        S    AR +     +MI      
Sbjct: 340 LPQYIEPVPEDDPRPNPVIDEYGIKAAVF-------ESWEDEARGVVTQTIHMIKNHPD- 391

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                     K I +LV       L+  +    K    +     D      +  +K L  
Sbjct: 392 ----------KTIAILVPTAWKMSLVVNILEARK----VPFELLDNTSGERNKTLKKLGR 437

Query: 424 LGRFILSQED-----DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG- 477
           +  F+   ED     ++   C+L          D         + E + E+I+K+     
Sbjct: 438 IIDFLAVPEDGEKFSNMINECILTGDYDGPVFVDSEDETRTMGQRELLSEFIKKYPVEKI 497

Query: 478 -------------------ISKFQHVIKYIHELIHIAQFCS--PHDFFTLILGAKKGRQQ 516
                                 ++     +  +  + +F +         I    +  ++
Sbjct: 498 LYPVGGIIETSDVPKELLKTKIWRDFTDSLDTVRQLLEFPNTVVEKLILFIAEKLRFDRE 557

Query: 517 FISRFGNEVIDVLDEFLNFT-------LRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
             +       D +   +N         L  E  S  ++    + +        +      
Sbjct: 558 ERAIAQKVAGD-VRYLMNQNPRWRLSDLAFELLSPKNMFNYFAGV----VWDLKGFEPKP 612

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFS-----HKHIKKMHIMPSLNDDPGIPIWIPQ 624
             V + T H +KGLE  +VFL    +  F          +   +     +   +      
Sbjct: 613 GVVTVATYHKSKGLEWDIVFLTGLNNADFPVLLDDRFMGEFWFLKEQYKNPQALIKSEMA 672

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                 IV D +   K  T  E  RLLYVG+TRA + L +  +     ++      ++  
Sbjct: 673 KVFEGKIVKDSVLESKLETISERARLLYVGITRAKEYLFLSSYEQNKGKRVELPSKYFFE 732

Query: 685 VYDSFHNDE 693
           +        
Sbjct: 733 LRRYIEEAG 741


>gi|323453081|gb|EGB08953.1| hypothetical protein AURANDRAFT_63493 [Aureococcus anophagefferens]
          Length = 787

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 98/809 (12%), Positives = 197/809 (24%), Gaps = 127/809 (15%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  +    +      +    ++ S +       + A+ L +A   +     
Sbjct: 25  GAGSGKTETLTRRVARAISSGARPEGVLVLTFSNKAARELRGRLAKHLGEAVAARVECAT 84

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
           F       L      ++      +        +  +++  +        +   + +    
Sbjct: 85  FHSFCLRLL------RRFGREAGLGPDFSIFGDAAQRALVKLCCAAAGDDDDAVERDARQ 138

Query: 126 SLTL-----------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
             +L                    +   Y    ++   +DF+D+I     LL +      
Sbjct: 139 VWSLIKRAKSSRLRAGDFDGRVGAIFRAYSAKLREQRAVDFDDVIDVAAGLLARDGPCRS 198

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                        +DE QDTS +Q  ++  +                L  VGD+ Q+IYS
Sbjct: 199 WA---RGRFALGFVDEFQDTSELQLALLDGVFGL---------ERTPLTVVGDDDQAIYS 246

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           +  A         R             +++ L  ++RS                +A    
Sbjct: 247 WRDAMGDAFGSFARRFP--------GATLLRLTRNYRSG-----------GHVVSAARAV 287

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             +      ++    +    +L    V               +                 
Sbjct: 288 VAANAARVDKALWTARPDGSKLEILRVEGGPGAEARAAAREVA----------------- 330

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
                  ++              + +D+ VL R                    +      
Sbjct: 331 ------KLLDAG----------AKPRDVAVLCRSAAPALRCAEN---ALTKLGVPCQIAG 371

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE---TET 465
                +   +   +A  R + ++ DD +    L           +  +            
Sbjct: 372 SNRFFERAPVAAALAHLRLVANELDDDACAKCLAEGCRGLGAKSVEALRRGGGPLLGACR 431

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFC--------SPHDFFTLILGAK-KGRQQ 516
                   A    +    ++  +  L               S       +L     G   
Sbjct: 432 TAAARGTLAPQQTAALWVLLARLDALYDAVASRAASASPVRSALRLLDDVLAPPVDGGDA 491

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQN---SYSSLQELISELEQYPPTIKRAHSANH--NE 571
                     D+L+E        E+    +   L  L   L+        +         
Sbjct: 492 KKREERRTARDLLEELRGVAGERERELEAAAPGLDALRHFLDTAMVAPDASEGVGDAVGT 551

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + T+H +KGLE P V L+     VF  +                       + S N  
Sbjct: 552 VTLCTIHKSKGLEWPHVLLLRATDGVFPAR--------------LRDAAGDAAAGSLNGS 597

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            S L +  + +  EE  RL +V +TRA             +  +       D    +   
Sbjct: 598 PSRLRRRDEAAHLEEERRLFHVAITRAERTF------AALHATREADGNGGDAGAGASAQ 651

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                 +    +           +    E  P +R     +     K  +K  +P +   
Sbjct: 652 RSPFLDLLPKAAATNAAAHKRPATRSPAEKQPAKRPVAKARPAASSKAKRKFAAPRRVAP 711

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTF 780
            EP     S         L  L S  Q  
Sbjct: 712 PEPPGARRSRAAAFVSPLLRDLWSHLQGA 740


>gi|226355516|ref|YP_002785256.1| ATP-dependent DNA helicase [Deinococcus deserti VCD115]
 gi|226317506|gb|ACO45502.1| putative ATP-dependent DNA helicase [Deinococcus deserti VCD115]
          Length = 849

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 103/691 (14%), Positives = 197/691 (28%), Gaps = 150/691 (21%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   ++E +++   LDF+D+I+    LL +      ++  I  + ++I +DE QD +L
Sbjct: 181 ARVYERHDELRRREGKLDFDDMIVAAWMLLSRFSA---LQQDIRAKWDYISVDEFQDVNL 237

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q E++  +              R+  A+GD+ Q+IY + GA P+ +L   +        
Sbjct: 238 AQSEMMDLVAGGC----------RSYMAIGDDDQTIYQWRGAHPRFILGFAKRYG----- 282

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                    LP +FR    ++ + D+V             +T               V +
Sbjct: 283 ----AQEYTLPANFRCPLGVIALADRVIGENRIRAPKRLRATR----------NGCGVHI 328

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                           +  A  +A                 K  
Sbjct: 329 HP----------------------------PRTGEAAHVAMQ-------------ALKEG 347

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               DI++L+R    +  I  +    +                    +  L+A     L+
Sbjct: 348 RNPDDIVILLRTYAQSAEIEQVLLEERT----PYRLIGAAPFYRRPEVTTLLAYIELALA 403

Query: 431 QEDDLS---------------FVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA 474
             D L+               +  +   P       D+ +I         T+   ++ FA
Sbjct: 404 DLDTLAGRPLSTERRERIQAHWKSVAHRPSRYLRLTDVERIAREAWRSGRTLATTLEAFA 463

Query: 475 NCGISKFQHVIKYIHELI----HIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEV 525
                     +  +   +             D     +GA   R+  +S      FG E 
Sbjct: 464 ESQPDHVAKPVALLATWLGFLTEDMGTTPGRDVLLDFVGAIGYREYLVSTAPTTEFGQER 523

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             ++D               +    + E  +Y  T+++        + IMT   AKGLE 
Sbjct: 524 AGMVDALAEMAQTRSLGELVTHLAQLHEQVRYEETLRKRGQDEEPRLTIMTAFRAKGLEW 583

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVV + D  S +++ K                                    H   +  E
Sbjct: 584 PVVIIPDCTSAIYTGKP-----------------------------------HADPAAGE 608

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  R+ YV +TRA  +L +    + +  +      +  +V         + +     S  
Sbjct: 609 EERRVFYVALTRAQQELHLIVGEDDNTTRFLEDVNYDRVVRQHDRLAGLLTRQPQAWSAG 668

Query: 706 KDEWIAY------------EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                A              W T       L     +            + + ++  ++ 
Sbjct: 669 DTIEAAEILGQFEHEGFVQRWLTPEVRRPLLAGFHNLANHQALATHTDPVAAEVRRLLDL 728

Query: 754 PYILNPSTIDTKGKTNLESL-LSDNQTFNRG 783
                   +D  G    +   L    T  RG
Sbjct: 729 QKYAAHGPLDIAGIKGGKWPDLEAVLTARRG 759


>gi|17227661|ref|NP_484209.1| hypothetical protein alr0165 [Nostoc sp. PCC 7120]
 gi|17135143|dbj|BAB77689.1| alr0165 [Nostoc sp. PCC 7120]
          Length = 821

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 88/667 (13%), Positives = 187/667 (28%), Gaps = 96/667 (14%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY-KMFKST 123
              LL       + T +    +    +  PDL   +           ++   + +     
Sbjct: 172 YLRLLEGQQFDGEETERLRRQSVLRTEILPDLATTVIHEAKSSGISPEQLQQWSQETTDA 231

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
              LT+A  L   Y+   +    +D++D+I+    +L+        R     ++  +  D
Sbjct: 232 YEILTIAAGLYEQYQNLMRSRDFIDYDDMILAALRVLENDSA----RRIEQNQVFAVFED 287

Query: 184 EVQDTSLIQWEVIRSL---------------TEDFFVGKNTHSSPR-------------- 214
           E QD+S +Q +++  L                     G     + R              
Sbjct: 288 EAQDSSPLQTQLLEILASGGETGGRGQGKQGAGGREQGAGGELTARFSPNPQSPIPSPQS 347

Query: 215 ---------TLFAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                     L  VGD  Q+I S F  A+P       +          +   +  +  + 
Sbjct: 348 PVPNPQSPINLIRVGDPNQAINSTFTPADPIYFREFCQE-------CDRSHKLATMDQAG 400

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST  I+   +       ++   ++ S+         + +     +     +  +     
Sbjct: 401 RSTTMIIAAANFALEWVNDSYDKNKKSSHLHLSAPFSLQK-----IHPVHQTDVNPAPVG 455

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           +        D              ++  +  ++  D   S             VLVR+ +
Sbjct: 456 RGLELHRPRD-------IYHTVELLSQRVIELLTEDMGKSA-----------AVLVRENR 497

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
               +         ++ I++          H+  ++++AL +F             L+  
Sbjct: 498 QGRWLVEALAPKCKEHNITLFDVGESDRRSHVP-QEILALLQFCDRPHSPDYLKAALEVL 556

Query: 445 LFN--FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           +        D+  + +   E    + Y    A       Q        L+        + 
Sbjct: 557 VKRQLIPTQDLNALASLPEE----FLYPGPLAAPQSELVQKASHLCRSLLRARLELPLYQ 612

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
             + +       Q  ++       D L E +N  +    +  + L  L   +        
Sbjct: 613 IISFLALTLNYDQAELAT-----ADKLSERVNKQIAGNNSMGAMLSALSEIVNSERFEPV 667

Query: 563 RAHSANH-----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK-----MHIMPSL 612
               +        ++ I+T+H AKGL+   VF+      +   +         +      
Sbjct: 668 ETDDSEARYTRNGQLTIITMHKAKGLDWNYVFIPFLHENLIPGRFWVPPQSQFLGDFTLS 727

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                        ++    V+   +  K     E  RLLYV MTRA   L +        
Sbjct: 728 EVARAQIRAALHGETGIPEVTSAWEQAKHLKTAEEYRLLYVAMTRAKQLLWMSAAQKAPF 787

Query: 673 EKKSNQR 679
                + 
Sbjct: 788 TWSKPEN 794


>gi|205373501|ref|ZP_03226304.1| ATP-dependent DNA helicase [Bacillus coahuilensis m4-4]
          Length = 276

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 22/184 (11%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            + + T     + K +   YE+ K +   +DF+D++  + DLL++ +    I  ++    
Sbjct: 66  DLPERTSTEKEI-KRVLIQYEKWKSEQNYMDFDDILELSLDLLQQDET---ILQQMRARF 121

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL DE QDT+ +Q+E+I+ L E            + LF VGD+ Q+IYSF+GA  + +
Sbjct: 122 THILCDEFQDTNPVQYELIKLLAE----------PTKNLFVVGDDDQTIYSFNGANQEHL 171

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L   R             ++ +L +++RS+  ILT+ +++             +      
Sbjct: 172 LNFHRDFP--------GCNVKKLTINYRSSNHILTLGNEIIQNNTYRHQKKLKAIREAVE 223

Query: 298 RSSR 301
           +   
Sbjct: 224 KPLF 227


>gi|315506913|ref|YP_004085800.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315413532|gb|ADU11649.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 1061

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 86/572 (15%), Positives = 148/572 (25%), Gaps = 150/572 (26%)

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
              Y    +K  ++D ++L+     LLK       +  +  +    I +DE QD   +Q+E
Sbjct: 634  ERYVALLRKRDLVDLDELLTLPVALLKGD---RKLVREYRERWKWIFVDEYQDVDAVQYE 690

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++R L+               L A+GD  Q+IYSF GA+    LR  +            
Sbjct: 691  LLRLLS----------PPDGNLCAIGDPDQAIYSFRGADVGYFLRFSQDF--------TD 732

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              ++ L  ++RS+A IL    +  +     +G   D                        
Sbjct: 733  ARLVRLNRNYRSSAPILAAAVQAIAPSSLVRGRRLDPARLDP------------------ 774

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                     P    + +       +     +   +       + +  I  +G+   +   
Sbjct: 775  -------EAPLVGRYAASSAYDEADFVVRTVDELVGGLSHRSLDSGRI--DGRTTSLSFS 825

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            DI VL R       I            I V       L D   +  +    R        
Sbjct: 826  DIAVLYRTDAQAAPIVDAL----ARANIPVQKRSHDRLRDRPGVPAIARELR-------- 873

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                                          ++   +++       +F   +  +      
Sbjct: 874  ------------------------HAGLDGSLAARVRQAGQILAERF--AVPTLDG---- 903

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            +    P D  T +          ++       D LD FLN                    
Sbjct: 904  SGAVRPEDVRTAV--------DLLTPLARRCGDDLDLFLNQ------------------- 936

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                     A       V ++T+H AKGLE PVVFLV     +   +             
Sbjct: 937  -LATGAEVDALDPRAEAVTLLTLHAAKGLEFPVVFLVGAEDGLLPLRWPGSEP------- 988

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                           E  RL +VG+TRA D+L +      +   
Sbjct: 989  -------------------------DDDAVAEERRLFFVGLTRAQDRLYVSHAGRRARHG 1023

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                      +                     
Sbjct: 1024 AERDTRPSPFLDVIDPALFERLDATEPRRPKD 1055


>gi|300932821|ref|ZP_07148077.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens DSM
            45100]
          Length = 1130

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 112/977 (11%), Positives = 272/977 (27%), Gaps = 121/977 (12%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRD 112
            +  S  +       LL     T       ++         +  L++ L ++ +    +  
Sbjct: 147  RLISGAEHDIVIRELLREHARTSTGPWPGDVREAVGYVGFARQLRDVLLRATER--GVGP 204

Query: 113  RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD--FEDLIINTNDLLKKRDVSAWIR 170
            +              T A      Y+        +D    +L+   N++++    S  ++
Sbjct: 205  QQLRELGMNYNRPMWTAAAEFLREYQGVANLAGSVDVNASELLHKANEVMEAAVGSEAMQ 264

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             ++   +  +L+D+  +        +               S   +   GD  Q ++ F 
Sbjct: 265  RRMSA-VKLLLVDDAHNLDPAAARFVEHFM----------PSAERVAIAGDPDQCVFHFR 313

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            GA+            K       + S I L  S R TA     ++ +         L   
Sbjct: 314  GAD----EAFLTRYAK--EADSARGSRIILSRSHRLTAQACLAINHL------QTRLPFQ 361

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR--- 347
                               L   +     S      ++         +    +++ R   
Sbjct: 362  PARMPIRGRDSAEGTSDSSLNCVIAPTETSHNLSVADALRRAHIRGIEYRDMAVIVRSVG 421

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +I      ++            ++ A+  LV +           LT         S+VG 
Sbjct: 422  KIPALRRVLMNHGVPVQVDSTSIVLAEQPLVALILLAVQATYQPLTPAEMKQLLESIVGG 481

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
               ++   L      A+ R  +   ++                  +  +    +  ++  
Sbjct: 482  ADAVMVRRLERAVAKAVRRARIDDNEEARQH-----HPNGRPYQAVDYLTWYLNFEDSAP 536

Query: 468  EYIQKFANCGISK-FQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISRF---- 521
            E++ ++      +  Q VI+ +      +     P      I  A +      +R     
Sbjct: 537  EWVVEYLKTREKEVLQRVIRVLQAGREAMKTNAGPEMILWRIWQATELSNALQNRALRGG 596

Query: 522  --GNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH--SANHNEVR 573
              G +    LD      +      E+N  +S++  + ++                 N V 
Sbjct: 597  TVGAQADQDLDAVMNLFDLVGDFVERNPNASVKTFVEDVRAQELPTGGRDRRGVQPNAVE 656

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I+  H A G E   V +     + +         +   L+    +   +  +    ++V 
Sbjct: 657  ILPAHAAAGREWEFVVVAGVQEETWPTTTPTVGGLFSQLDLVDLLDNNVGAAGELPSLV- 715

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD-SFHND 692
            ++      +T  E  RL  + ++R+    ++   ++   E K   R   ++    +    
Sbjct: 716  EITAGRVAATIAEERRLFLLAISRSRGATVVTAVNSVGEEGKEPSRFISEIQGVGASEQQ 775

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ-------------KI 739
                ++ +T +      +A E       +   + E    + +                  
Sbjct: 776  VSQPQVTVTEAAELPRVLAVEPMVAELRDAVTDSERPHHERVAAARNLARLAHHGVFGAH 835

Query: 740  PKKLFSPIKNDIN-----EPYILNPSTIDTKGKTNLESLLSDN-------QTFNRGLIIH 787
            P + +       +     E   L+PS +    +  L S L  N       +    G ++H
Sbjct: 836  PDEWWGMAGASTDRVINPEEIRLSPSQLQLMDECVLRSFLDRNSGEQERTEAMRIGEMVH 895

Query: 788  KLLQ------------VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
             + +             I  +   +       +  ++ K    +  + L   +   L+  
Sbjct: 896  AIAEGFVHGLSLEDALRIVEVVIPEVSTVAW-WRAESLKRNWTEGIERLHKWMRGQLDGL 954

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKD--IIISGRIDQISI-------SQQ--NIFIFEYK 884
             +       + +E  +   I        +++SGR D +                ++ ++K
Sbjct: 955  DVAR--GEGAVAEQVLRTTIGSTGDGIEVLLSGRADLLITQVRTMDSEAGALGTWVIDFK 1012

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN----------KSLVCLLIYVSEPK--- 931
            +        +        QL  Y+ +L     +            L   L+Y    +   
Sbjct: 1013 SGKEPISGDDA---KESPQLRAYQYLLHAQSQDPAAGADRGKWSPLGAKLVYPGAKRSTM 1069

Query: 932  -VFI-IPQNKLNKAFAE 946
             +   +     ++   E
Sbjct: 1070 AIREQLSAESNDEVLEE 1086


>gi|227505540|ref|ZP_03935589.1| superfamily I ATP-dependent helicase [Corynebacterium striatum ATCC
           6940]
 gi|227197837|gb|EEI77885.1| superfamily I ATP-dependent helicase [Corynebacterium striatum ATCC
           6940]
          Length = 684

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 94/738 (12%), Positives = 193/738 (26%), Gaps = 167/738 (22%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A+   +    Q   +    L     +      +++          D   +++ 
Sbjct: 83  AQTFHAAARRQLRYFWPQVAGDLPWELLDNKFSVVARAVRSLNLDNSKDSIRDYLSEIEW 142

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAK--KKNCVLDFEDLIINTNDL 159
           ++   I                 +       +   YE+ K  +    LDF+DL+++    
Sbjct: 143 AKSSLIGADSYPEVIATTDREAPTDPAKVAEVFRRYEQLKSTQDRMFLDFDDLLMHIAGA 202

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           ++     A +     ++    ++DE QD + +Q  V+ +   D             L  V
Sbjct: 203 IENVPSVAEV---FREQYRTFVVDEYQDVTPLQQRVLNAWLGD----------RDDLTVV 249

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF+GA P  +L   R             +I++L   +RST  +  + ++V +
Sbjct: 250 GDANQTIYSFNGASPDYLLNFSRTYPN--------ATIVKLQRDYRSTPQVTDLANRVIA 301

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                                       ++L        +                    
Sbjct: 302 KATGR------------------AAGTRLELQGMRDPGPEPTFK--------------AY 329

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            S  I A+ +A  I  ++             ++A +I VL R    +            D
Sbjct: 330 ESEEIEAKEVAGQILTLLNKG----------VKASEIAVLYRINAQSEQFEQAL----AD 375

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I               I + + +      ++D  +    +                  
Sbjct: 376 AGIVYQVRGGEGFFRRPEILEAIRVLIAATRRDDLPADPVAIA----------------- 418

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                   E          ++ +   + ++ L          D    I+   +G      
Sbjct: 419 ---RAAFVELGLTPTEPQGAQARERWQSLNAL---------VDLIAQIVNDHEGI----- 461

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                                      L  ++ EL +     +         V + T+H 
Sbjct: 462 --------------------------DLNGVLGELHRRSENKQNPTMEG---VTLATIHA 492

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFLV    ++    +  K                                  
Sbjct: 493 AKGLEWDAVFLVGLTEKLMPINYAIK---------------------------------A 519

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL YVG+TRA + L +      +   ++++      +       E      
Sbjct: 520 GDEQVEEERRLFYVGITRAREHLALSWALAKTTGSRASRE-RTRFLDGLVPGIEETPGSG 578

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                 K    + E ++   +          +   +     +   +    +   P  +  
Sbjct: 579 RRYRQRKCRICSAELTSPAEKVLGRHEYCEYEGDEEVFSALRAWRAKTAREAKVPAYVIF 638

Query: 760 STIDTKGKTNLESLLSDN 777
           S    +  +         
Sbjct: 639 SDATLQAISEALPASEAE 656


>gi|215447498|ref|ZP_03434250.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis
           T85]
          Length = 745

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 84/653 (12%), Positives = 188/653 (28%), Gaps = 99/653 (15%)

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A   A  I++ +    +        +    + V+VR       +               V
Sbjct: 55  AHAEAAMIADALRRAHLID-----GVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAV 109

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT------- 458
           G     L+   A++ L+ +        D    + +L  P+       + ++         
Sbjct: 110 GG---PLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARP 166

Query: 459 ---QRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCS-----PHDFFTLI 507
               R   + + E +   A          + V   +       +  S     P       
Sbjct: 167 GQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAA 226

Query: 508 LGAKKGRQQFISRFGN------EVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQY 557
                 ++++++   +      +    L+      + T     + S +SL+ L+  +   
Sbjct: 227 WQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTAL 286

Query: 558 PP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               ++   +A   +V +++ H A G E  +V +      ++ +   +   +      D 
Sbjct: 287 QLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDE 346

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK- 675
              +    S              +     E  RLL   M RA  +L++    + +     
Sbjct: 347 LDGVTKDASM-------------RAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGH 393

Query: 676 ---SNQRTWYDMVYDSFHNDERVKKIKLTNS--------------INKDEWIAYEWSTHH 718
                   ++++   +  + E V    ++                +      A + +   
Sbjct: 394 EAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRD 453

Query: 719 PENTPLEREETI----KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
              T L R            +   +     S    D ++   L PST+       L  L 
Sbjct: 454 CAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLA 513

Query: 775 SDNQTF-------NRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLL 825
             +            G ++H L                  +      A+ + A E     
Sbjct: 514 ERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHR 573

Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD-------IIISGRIDQISISQ-QN 877
             I   ++      A S    ++V V   I+   +D       I + GR D++       
Sbjct: 574 AMIQAFVQ----WRAQSRSELTKVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGR 629

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD---SYPNKSLVCLLIYV 927
           + I + KT      + +       AQL++Y+  + +      ++     L+YV
Sbjct: 630 LVIVDIKTGKTPVSKDDAQQ---HAQLAMYQLAVAEGLVRAGDEPGGARLVYV 679


>gi|303239693|ref|ZP_07326218.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
 gi|302592864|gb|EFL62587.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
          Length = 745

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 104/625 (16%), Positives = 185/625 (29%), Gaps = 94/625 (15%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
              +   +   I  ++     +      + L+ A  +   Y++  K    LDF+D++ N 
Sbjct: 166 LSAIGDFKCRGINSKEAMERCRGLGE-DSILSWASEIYEIYDKKLKIGGFLDFDDMLYNA 224

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             +LK+      +  K  ++ + +  DE QD++LIQ E++  ++               L
Sbjct: 225 KKMLKED---QLLLEKYQKKYSFVCEDEAQDSNLIQSEILDLIS------------NGNL 269

Query: 217 FAVGDEKQSIY-SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             VGD  Q+I  SF  ++                      ++ ++  S R+T DI+ + +
Sbjct: 270 LRVGDSNQAICGSFSNSDFTLFKNFCD---------NPSTTVYKITQSSRNTVDIINLAN 320

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
                    +     +       +  I  VG                     SW      
Sbjct: 321 YFVKYV---RESHPVAECRDSLLAQFIEPVGEDDSRPNPKIDKYGIKAGIFTSWED---- 373

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                     AR +      MI           R    K I +LV       ++      
Sbjct: 374 ---------EARSVVVKAQEMI-----------RKYPGKTIAILVPTSWRMNVVLNFLEA 413

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            K    I     D      +  I+ L  +  FI   E  L F  M+       S D    
Sbjct: 414 RK----IPYELLDNTSGEKNKTIRKLGRIIDFIAQPESGLKFYDMMNECFLLDSYDSESA 469

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
              Q  E +TV + +       +   + ++  I   I            + I      + 
Sbjct: 470 DEEQNEEKKTVGQRVILCEFLKLYPVEKLLYPIGGEIERV-DIPKDLLASDIWSDFTEKL 528

Query: 516 QFISRFGNEVIDVLDEFLNFTLR---NEQNSYSS---LQELISELEQYPPTIKRAH---- 565
           + +         ++++ + F       E+   +    +   +  L    P  K A     
Sbjct: 529 ELVRELLEFPSTIVEKLILFISEKLGFEREERAIAQKVAGDVRYLMSQDPHWKLADLALE 588

Query: 566 ---------------------SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                                      V + T H +KGLE  +VFL    S  F      
Sbjct: 589 LLSPKNIFNFFAGIVWDLKGYEPKPGVVTLATYHKSKGLEWDIVFLTSLTSTDFPVSLDD 648

Query: 605 K-----MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           K       +     +   I     +         + I   K  T  E  RLLYVG+TRA 
Sbjct: 649 KFIGEYWFLKEEYKNPQAIVKADLEKLLDGKSTGNSIVRSKIETISERARLLYVGITRAK 708

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDM 684
           + L +        +K     + Y +
Sbjct: 709 EYLFLTSFETNRGKKNETLASKYIL 733


>gi|16329962|ref|NP_440690.1| hypothetical protein sll1121 [Synechocystis sp. PCC 6803]
 gi|1652448|dbj|BAA17370.1| sll1121 [Synechocystis sp. PCC 6803]
          Length = 770

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/604 (13%), Positives = 179/604 (29%), Gaps = 77/604 (12%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
           +  P+L + +                          L +   L  HY+   +    +D+ 
Sbjct: 187 EVLPELTKTVVAEAKSSGLSPQAVADMGRIAPGSELLLMGAGLFKHYQALMEAKNWIDYN 246

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           D+I+    +L+   +      +  ++   +  DE QD+S +Q +++  L ++        
Sbjct: 247 DMILAALRVLEDPHLCR----QWQEQFFGVFEDEAQDSSPLQEKLLTKLAQNA------- 295

Query: 211 SSPRTLFAVGDEKQSIY-SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                L  VGD  Q+I  SF  A+P    +  +  Q          S   +  + RS   
Sbjct: 296 DGTIRLIRVGDPNQAINSSFTPADPVYFDQFCQRCQAL-------GSFATMDQAGRSNLQ 348

Query: 270 ILTVVDKVFSI-PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
           ++   + +     ++ Q               R   +  V+  +   +   +    +   
Sbjct: 349 VIAAANFLLEWVNQDWQARFNSGPKGDATLPFRPQAIRPVEPGDPQPNPPATDGGVEIRF 408

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                + +           +I + +  ++  +   +             +LVR+ +    
Sbjct: 409 PQDINEEV----------EQIRHRLVPLLLANPHHNA-----------AILVRENRQGRF 447

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK--SPLF 446
           +    + ++ D  + V+          +   ++++L +FI            L       
Sbjct: 448 VADRLKDVEKDGGLKVLDVGDQDRNSRIP-GEILSLLQFIDRPHSPDLLKATLTVLQERQ 506

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                D+  +     +    + Y         S           L+        +     
Sbjct: 507 LIPTQDLNALAAVPEQ----FLYPTPLMPPLASPAVSAQGLCRSLLKARLELPAYQLIAF 562

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           +  A       ++             L+  L+ +     SL+ L+SEL       +    
Sbjct: 563 LGLALNYDSSDLATLQK---------LSERLQVQTQPERSLKNLLSELHTIANDEQFEAI 613

Query: 567 A--------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK-------HIKKMHIMPS 611
           A           ++ I+T+H AKGL+   VFL                         +  
Sbjct: 614 ASDSDEKYTRPGQITIITMHKAKGLDWDYVFLPFLHQDTLPGDLWVPKGGQFLGQFTLAE 673

Query: 612 LNDDPGIPIWIPQSKSRN-----NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           +       +   + + +       + +   +  ++  + E  RLLYV MTRA   L +  
Sbjct: 674 VARAQIRTVVHHRQQQKPQAIALPVTATAWQEARRLKEAEEYRLLYVAMTRAKRLLWLSA 733

Query: 667 HSNT 670
               
Sbjct: 734 AQEG 737


>gi|326443259|ref|ZP_08217993.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 707

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/571 (15%), Positives = 160/571 (28%), Gaps = 160/571 (28%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              K  +           + A YE+ K+   V+DFED+++ T  +L+       I  +I 
Sbjct: 152 AVAKSLRDAPRDPAEISQIYAMYEQLKRDRAVIDFEDVLLLTVGILQD---RPDIADQIR 208

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++  H ++DE QD S +Q  ++     D             L  VGD  Q+IYSF GA P
Sbjct: 209 RQYQHFVVDEYQDVSPLQQRLLELWLGDRDS----------LCVVGDASQTIYSFTGATP 258

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L  +              ++++L   +RST  ++ + + + S           +   
Sbjct: 259 DHLLSFRTR--------HPSATVVKLVRDYRSTPQVVHLANGLLSQARGR-----AAEHR 305

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           +   S R                                 S  +       A   A  I 
Sbjct: 306 LELVSQRESGPEP---------------------------SYEEYPDEPAEAEGTARRIR 338

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +I T           + A +I VL R    + +          D  +           +
Sbjct: 339 ELIDTG----------VPAGEIAVLYRVNAQSEVYEQAL----ADAGVPYQLRGAERFFE 384

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              +++     R                        D +                 Q ++
Sbjct: 385 RQEVREAGVALRGAA----------------RAGGNDSLLDSADDLPGQVRAVLSTQGWS 428

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
               +    V      L  + +                                      
Sbjct: 429 TEPPAGSGAVRDRWESLAALVR-------------------------------------- 450

Query: 535 FTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 +  S ++L +L++EL++               V + ++H AKGLE   VF+V  
Sbjct: 451 LAEDFARARSGATLADLVAELDERAAAQHAPTVQG---VTLASMHAAKGLEWDAVFVVGL 507

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +                                     +         EE  RLLYV
Sbjct: 508 TEGMMP-----------------------------------ITYAKTDEQIEEERRLLYV 532

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
           G+TRA   L +    + S   ++++R    +
Sbjct: 533 GVTRARFHLSLSWALSRSPGGRASRRPTRFL 563


>gi|154488221|ref|ZP_02029338.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis
           L2-32]
 gi|154083372|gb|EDN82417.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis
           L2-32]
          Length = 1371

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 93/669 (13%), Positives = 184/669 (27%), Gaps = 122/669 (18%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                +     +  ++ V          + + A+ L+         +           + 
Sbjct: 194 AIAGAMIGSDCTSFDEAVERVRAWDKAFVAQVAKALEDEDVPDDEPKV---------GKA 244

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
              +K         +  + + +  +                    T     L   L A Y
Sbjct: 245 PKQKKKESDTAFETRMREYRAQCHQLC---------VYKTAQLAGTARKRDLLLDLVADY 295

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
              K+   + +F D  I    L+ +      I     +   H+L+DE QDTS  Q  ++ 
Sbjct: 296 HAEKRALNMAEFSDFTIAAFQLVTRFPS---IGATYRKRYTHVLLDEYQDTSTTQAALLA 352

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
           +L       ++  +      AVGD  QSIY++ GA P      +      AT+       
Sbjct: 353 ALFHADSTHRSAVN------AVGDPFQSIYAWRGASPGAFRMLQHDFGHDATD-----KP 401

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
             L ++ R++  +L   + +              T  +R  + R G     ++    ++ 
Sbjct: 402 YTLTVTRRNSRMVLEAANNL--------------TKPLRLPARRRGSSLMREVDVPPLAN 447

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
            D+                  ++      + IA      + T T              + 
Sbjct: 448 IDNAPEGTLGVLGYATFGQEIDAIVRFAKQAIA------LHTPTENELADGAKDNRPHVA 501

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +L R +   P              ++ +   +  L +   IKD++AL   +    D  + 
Sbjct: 502 LLFRSKTQMPAYEDALE----QAGLTTLVVGQAALLERPEIKDILALLHVVCDHTDSAAL 557

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYI-------------------QKFANCGI 478
           + +L +P F  S DD+  +        T   Y                    +       
Sbjct: 558 MRLLATPRFGLSADDLQALAGIAERLNTAQRYRALVSAGIVEADANPSDADIRATVRAYR 617

Query: 479 SKFQHVIKYIHELIH------------------------------IAQFCSPHDFFTLIL 508
            +  + +  I  L+                                       +     +
Sbjct: 618 DQVPNAVFLIDVLLRGDLRHLVDGVLSRTGAASVIHAGRVIQQVQRTAGHPLPEVVRTAI 677

Query: 509 GAKKGRQQFI-----------SRFGNEVIDVLDEFLNFTLRNEQN----SYSSLQELISE 553
            A       +           +R  +     LD  L+      Q        SL+  IS 
Sbjct: 678 TALGLDIDLLLAERMRHPDAGNRVTSHAASSLDAMLSLVDTYLQEIAAQGTPSLRAFISW 737

Query: 554 LEQ--YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           ++                 +V +MTVH +KGLE   V +V      F      ++ +   
Sbjct: 738 VDSLRDASDDNATAPDTPVDVVLMTVHQSKGLEWDAVAVVGMRDGTFPSSQGDRLSVKTD 797

Query: 612 LNDDPGIPI 620
            +   G   
Sbjct: 798 EDHPGGRRD 806



 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/324 (10%), Positives = 86/324 (26%), Gaps = 57/324 (17%)

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
               ++        +   +      ++  + +    ++    +                 R
Sbjct: 1061 ADESATPSPETGNSLLRLAKLLVADEHLMPEPDAADAGESQDAFDEAVRAKGERILAAGR 1120

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
            +           + ++        +  P     S                      G   
Sbjct: 1121 QNVTSLQARAGSMGERDSRAYWRGLVRPIPHVASP-----------------AAQLGTRF 1163

Query: 787  HKLLQVIFTLPEH---------KRKNFITSYCTKNAKLWPAK--------EYKNLLLSIT 829
            H   +                        S     A +   +        + ++      
Sbjct: 1164 HAWAERFIMADADVDGIGGTEGAAGMAAQSRAELIALIGDTQVDADNGGVQSQDAPSQDA 1223

Query: 830  RLLENPMMTTA--------MSCDSYSEVSVSGKINCPKKDIIISGRIDQIS-----ISQQ 876
            +L +   +            +    +       ++ P+   I++G++D +       + +
Sbjct: 1224 QLRDERKLAAWQRRLVASPWAKRRPAWAERQLVVDMPQLGTIVNGKLDAVFFGGLDETDE 1283

Query: 877  --NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKV 932
                 + ++KT    P++ + I    +AQL +Y  +L      P  ++   L YVSEP  
Sbjct: 1284 TKRYTVVDWKTG-VKPRKPDEIKEK-LAQLDLYRLLLAAMEGVPLDAIDACLYYVSEPHE 1341

Query: 933  FIIPQNKLN----KAFAEISTKIP 952
                 + L+    +  AE+S  IP
Sbjct: 1342 ADRELDALDKTEEEILAELSYGIP 1365


>gi|306835514|ref|ZP_07468528.1| probable helicase [Corynebacterium accolens ATCC 49726]
 gi|304568571|gb|EFM44122.1| probable helicase [Corynebacterium accolens ATCC 49726]
          Length = 1035

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 137/1044 (13%), Positives = 271/1044 (25%), Gaps = 199/1044 (19%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
           ++                  +    S   E+G     + ++ L+  +    +      L+
Sbjct: 49  DTVIHALDRAQETGADPSGILVVAAS--KESGARLRRELSERLEDYAAQSSMVRSIHSLA 106

Query: 71  SFFLTQKFTPQKNIITQEINKK-----------------------SPDLKEKLKKSQDEF 107
              L      +  +IT                             + +     ++ +D  
Sbjct: 107 FALLRSASDEELRLITGAEQDAVIRELLEDHAESGHGDWPEEVRPALEYVGFARQLRDFL 166

Query: 108 IKIRDRFNTYKMFKSTLA-----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
           ++  +R  +    +S  A       + A      YE  +  +    +    +    LL+ 
Sbjct: 167 LRSIERGLSPADLESLGAKYGRGMWSAAGTFLREYERVQALSGAHSYSAAELVNQVLLRP 226

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
              S+          + I++D+ Q       ++I  L  D           + L   GD 
Sbjct: 227 ELTSS-------HPWHTIVVDDAQLLDPTAGKLISRLASD----------AQLLVIGGDA 269

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QS+++F GA  + +                  + +EL    RS                
Sbjct: 270 DQSVFAFRGANSQFLEEFPAE------------NSVELSQPHRS---------------- 301

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                               G    V + +      D   +  +             +  
Sbjct: 302 --------------------GSPACVSIVDSEGRLRDVVADTVRRRHLDDGVQWRDIAVI 341

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 I      ++            VI A+  LV         L   L+     +   
Sbjct: 342 VRSTADIGQMRRTLLAAGVPVHISPTDVILAEQRLVSAMLLALRALEEDLSNAELEELLT 401

Query: 403 -SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             V G D   L   +      A                 + S L      ++     Q  
Sbjct: 402 GPVGGADPVTLRRLIRGLRRWA------------PDTRGMDS-LRELLHGELPDFNGQLT 448

Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           E E       +       +       + E++      +  D     L     R       
Sbjct: 449 EREFSILERVRAVLAAGRQAIQAQASVEEILWEVWSATELDMR---LQTSALRGGATGSQ 505

Query: 522 GNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH--SANHNEVRIMTVH 578
            +  +D +    +      E+   SSLQ  ++ + +           +A    V I+T H
Sbjct: 506 ADRDLDAMMALFDAAGDYSERRPGSSLQSFLTHITEQELPTGVRDRRTAIPQAVEIITAH 565

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            A G E   V +       +                D       P +             
Sbjct: 566 GAVGREWDTVIVAGAQEGAWPSLGETGSIFGQEDLIDLLDRDIEPDTPV----------S 615

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW----------------- 681
              S   E  RL +V  TR  ++L+I    N + +  +    +                 
Sbjct: 616 HIASRLAEERRLFHVATTRHRNRLLIAAVENPNEDAFAEPSRFIAEFTGRGVDVPGTMAR 675

Query: 682 ---YDMVYDSFHNDERVKKIKLTNSI-----------------------NKDEWIAYEWS 715
                 +  +    E    +     +                            +A   S
Sbjct: 676 REASRALRATQFPRELGLDVPEPAPVSLRDGLEVDPLDISVLSVPSFVAQLRRVVANPES 735

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFS----PIKNDINEPYILNPSTIDTKGKTNLE 771
                     +   + Q       P + FS         +     L+PS ++      L+
Sbjct: 736 GEAERRQAARQLARLAQAGIPGAHPDQWFSARSVASHTQLRGSKSLSPSRVEALLNCPLK 795

Query: 772 S----LLSDNQTFN---RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
           +    L  D        RG + H  L+ I    + ++   +     +     P  + ++ 
Sbjct: 796 AIVGNLAEDPSGAEHLLRGTMAHAFLEAIGRGMDAEKARLLVMEAYEFILDVPQWQLQSK 855

Query: 825 LLSITRLLENPMMTTAMSCDSYSEVS-VSGKINCPKK-DIIISGRIDQISISQQN-IFIF 881
           L   +RLLE      A   +  +E++ V   +      DI + G +D++         + 
Sbjct: 856 LEEFSRLLERTQ-QWAQQSEVKNELAGVEVPVYVEVAPDIRVGGFMDRLMQDGDGNYLVV 914

Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD-SYPNKSLV---------CLLIYV--SE 929
           + KT      + E        QL  Y+  L   S+  + +           +L+Y     
Sbjct: 915 DLKTGKSAATQAEAEENR---QLMTYQLALSRGSFDGQRVRDGEGMPRAGGVLVYPGKDS 971

Query: 930 PKVFIIPQNKL-NKAFAEISTKIP 952
            K+    Q++L  +A  E ST +P
Sbjct: 972 SKITTRTQSQLTAEALEEFSTLLP 995


>gi|183981381|ref|YP_001849672.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
 gi|183174707|gb|ACC39817.1| ATP-dependent DNA helicase [Mycobacterium marinum M]
          Length = 1057

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 101/975 (10%), Positives = 232/975 (23%), Gaps = 190/975 (19%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
            + ++        + T         + L  A   +      S      L         + 
Sbjct: 103 RRAAERTGDAPPRLLTSAEQDAIIRELL--AGDLEDGPSARSAWPRHLLP-------ALT 153

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
           T        +L+  L +  +  +   +     +           A      YE+      
Sbjct: 154 TAGFAT---ELRNLLARCAERGVDPMELERLGRRSGRPE--WAAAGRFARQYEQVMLLRA 208

Query: 146 V------------LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                        L   +L+ +  +          +       +  +L+D+ Q       
Sbjct: 209 AVGTATPQATAPALGAAELVGSALEAFASDPE---LLAAERARLRFLLVDDAQQLDPQAA 265

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            ++  L                    GD  Q+++ F G EP  +L               
Sbjct: 266 RLVEVLAAGAEFA----------LIAGDPNQAVFGFRGGEPAGLLG----------GPLD 305

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + L +S R    +   V  +               +  RH      + G+V +   
Sbjct: 306 GGPAVTLTMSHRCAPAVARAVSGIARRLPG--------GSAGRHIDGTGTEDGSVTVRLA 357

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
             +  ++             D                                    +  
Sbjct: 358 ATAHAEAAAIADALRRAHLVD-----------------------------------GVPW 382

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQE 432
             + V+VR     P +            + V        L +  A+  L+ +        
Sbjct: 383 SQMAVIVRS---VPRVAARLPRALAAAGVPVSIPPIGGSLAEEPAVGALLTVLAATAEGL 439

Query: 433 DDLSFVCMLKSPLFNFSE-----------------------DDIFKICTQRHETETVYEY 469
           +    + ++  P+                            D +    ++          
Sbjct: 440 NADQALALITGPIGRVDPVTLRQLRRTLRRAVAGRSPEDFGDLLVATLSEDGRPAVGSAG 499

Query: 470 IQKFANCGISKFQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRF------G 522
             +         + V   +            P             + ++++        G
Sbjct: 500 SNQPPGPQFGPLRRVRAVLAAATRCHRAGQDPRYILWAAWHRSGLQNRWLAAIDRGGPAG 559

Query: 523 NEVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTV 577
            +    L+      + T +   + S +SL  L+  +               N +VR+++ 
Sbjct: 560 VQATRNLEAVTALFDITDQYVSRTSGASLSGLLEHVAALQLPRVSEEPVAQNEQVRVLSA 619

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H A G E  +V +      ++ +   +   +      D    +    S     +  +   
Sbjct: 620 HAALGHEWDLVVIAGLQDGLWPNTIPRGGVLATQRLLDELDGVSGNASARAPLLAEERRL 679

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS----NQRTWYDMVYDSFHNDE 693
            L               M RA  QL++      ++            ++++   +  + +
Sbjct: 680 LLA-------------AMGRARRQLLVTAVDGDTSGGGQQAALPSEFFFEIAQWANGDSQ 726

Query: 694 RVKKIKLTNS------------------INKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
            V    ++                     +     A             +          
Sbjct: 727 AVAAPPVSAPRVLSAAAVVGRLRGVVCAPDGAVDDAARQCAATQLARLAKAGVAGADPAG 786

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT-------FNRGLIIHK 788
              +     +       +   L PST+ T     L  L   +            G ++H 
Sbjct: 787 WHGLIPVSTTAALYGAGDVVTLTPSTLQTLNDCPLRWLAERHGGTNPRDLRATIGSVLHA 846

Query: 789 LLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY 846
           L+       E         +      A  + + E       I   +E        +    
Sbjct: 847 LIAEPGASEEQLLAELARVWKLLPFEADWFSSNELARHRAMIQAFVE----WRGQTRSEL 902

Query: 847 SEVSVSGKIN-------CPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPY 898
           +EV V   I+            I + GR+D++       + I + KT      + +    
Sbjct: 903 TEVGVEIDIDGVLDAARDDGGAIRLRGRVDRLERDGAGRLVIVDIKTAKTPVSKDDAQQN 962

Query: 899 THIAQLSIYEKILKD 913
              AQL++Y+  + +
Sbjct: 963 ---AQLAMYQLAVAE 974


>gi|300722702|ref|YP_003711992.1| putative UvrD/REP helicase [Xenorhabdus nematophila ATCC 19061]
 gi|297629209|emb|CBJ89806.1| putative UvrD/REP helicase [Xenorhabdus nematophila ATCC 19061]
          Length = 631

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/605 (14%), Positives = 189/605 (31%), Gaps = 127/605 (20%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY-------- 132
           +K +  Q + +    + + L    ++  K R+R     + + ++    L           
Sbjct: 112 RKTVFLQSLRESGIGIDDFLNAGDEKTRKNRERIIHNYLEQFSVVKRELLTEEEIKEKYT 171

Query: 133 -------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                  +   Y+ A  ++  LDF+D+++  + +L ++    W       +  HI +DE 
Sbjct: 172 SNESFLSVFQAYQGALVRSGGLDFDDILVYAHRILMEQP---WCANIYRAKYKHICVDEA 228

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD +  Q+E I+ L  D           +++  VGD  Q IY F+G+         ++  
Sbjct: 229 QDLNKAQYEFIKVLCGDQI---------KSVMMVGDPNQMIYGFNGSSSDY---LCKLFL 276

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +  +       + EL  ++RS+  ++++ +K+                            
Sbjct: 277 QDFSA-----QVFELKENYRSSKAVISLANKL---------------------------- 303

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                              + +        + +  +    A  I   ++ ++   T    
Sbjct: 304 -------------KPGSQVEADFVLDGQYEIHKCQNEEDEATWICNKVNELLCQKTNIEI 350

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG--NDRFILTDHLAIKDLMA 423
                I   +++V+ R R     +         +  I  +   ++R      L  + L  
Sbjct: 351 EGD--ISLTNMVVIARNR----FVFLKLEKGLGEKGIPYLLKKSERQAEPSSLFGRVLDL 404

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
             R  L+ +D +    +  +         +  +    +    +   ++  A         
Sbjct: 405 AIRVRLNPKDWIDGKKLCTALKI-----SVPSVWGNDNLLLDMAAAVRHSAISFPDIQAD 459

Query: 484 VIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
           +++ I  L I        +D F  I+         + +  NE+   L E  +F       
Sbjct: 460 LLEEIQGLDIEKPNIPKLYDRFNTIIQ--GLNDVNLPKEDNELERSLQELDDFRNCWTTF 517

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L E +          + A + +   + + T+HT KGLE  +VFL+     VF    
Sbjct: 518 KRKGLGESLMSFRNAIALGQVAENYDPTGLTLSTIHTMKGLEKDIVFLMGMCEGVFPD-- 575

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                             +   K   EE     +V +TRA   +
Sbjct: 576 ---------------------------------YRANTKKELEEELNSAFVAITRAKRWI 602

Query: 663 IICKH 667
            +   
Sbjct: 603 FVSYP 607


>gi|291529665|emb|CBK95251.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1]
          Length = 673

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 86/572 (15%), Positives = 172/572 (30%), Gaps = 135/572 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YE+      +L F D       +L           K      HI++DE QD+S I
Sbjct: 170 DLYHEYEQILTSQGLLTFADQEPMALSVLDMHPDQ---LAKF--GFEHIVVDEFQDSSDI 224

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E I+   +          + + +  +GD+ QSIY F  A P  ++  +          
Sbjct: 225 QMEFIKLFAD--------CPTVKDIMVIGDDNQSIYGFRNANPDNMIHFQ-------EKL 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
           G+  + + +  ++RS  +I+ + +K+ ++  N       +           G  GTV + 
Sbjct: 270 GKPVTSLLMTQNYRSYEEIIDLANKLVALNVNRIDKPLVAA---------KGAGGTVSVR 320

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  + +                           IA  I  ++              
Sbjct: 321 GFYNEPDEQK--------------------------YIADNIKKLLEDG----------Y 344

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + +DI ++   +K+            +   I  V      + ++  +   M+L       
Sbjct: 345 KPEDIAIITFSKKELMKFA----AAFSKEGIPWVMMAPVKVIENSRVLAAMSLADAFYEP 400

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           E   S+   L                  +++ + + E      N  I + +     I   
Sbjct: 401 EATQSYFNYL----------------VAKYDGKILEELTDDEINKEIEELRSTFSGIDNA 444

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
               Q  + HD    +                +V ++  ++L      E     S  + I
Sbjct: 445 AFNFQQKTFHDMLEAL-------------DPEKVDEIYQKWLEQV--YENEDLPSELQFI 489

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
              +++    +      +  V + T H++KGLE  V+F                      
Sbjct: 490 QNFKRFGKNTELKMDQKYEGVTLTTAHSSKGLEWKVIF---------------------- 527

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                        +   +      +    +   EE  RLL+V MTRA ++L +       
Sbjct: 528 -------------NSISSYDSKRYLYGRHQDEVEEKRRLLFVSMTRAKEKLFVTGQYKFC 574

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            ++K+       +       D  +K     + 
Sbjct: 575 TDEKNGDIYNRFLKELYEIVDPELKSYVPVDP 606


>gi|209521793|ref|ZP_03270474.1| UvrD/REP helicase [Burkholderia sp. H160]
 gi|209497763|gb|EDZ97937.1| UvrD/REP helicase [Burkholderia sp. H160]
          Length = 471

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/446 (15%), Positives = 141/446 (31%), Gaps = 84/446 (18%)

Query: 3   NRFGLSLNESYELIYKDLW-----PLPYFQVSDINKYVSLSMETGNPTILKKAQ--TLQQ 55
            R  L +      I          P     ++    +       G   + + A    L  
Sbjct: 94  RRAALEMTRRVTRITGAAAATAGTPSVGTALAQGLTWAGTFHSVGARLLREYADLIGLVP 153

Query: 56  ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN 115
           A      E+   L++        + ++     +       +  ++  +      + +R  
Sbjct: 154 AFTINDREDSADLMNLVRHELGLSAKERRFPAKG--TCFAIYSRVVNTGASLGHVLER-- 209

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
            +   +     L     L A Y +AK+K  VLD++DL++  + +  +  ++A     +  
Sbjct: 210 AFPWCREWEDDLR---RLFAAYVDAKQKQSVLDYDDLLLYWSHMAAEPAIAAD----LSA 262

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             +H+L+DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF GA  +
Sbjct: 263 RFDHVLVDEYQDTNRLQASILLAL----------KPDGRGLTVVGDDAQSIYSFRGATVR 312

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +L      +            + L  ++RST  IL   + V  +       +  +    
Sbjct: 313 NILDFPTQFE-------PPARQVTLERNYRSTGPILAASNAVIELASERYTKNLWTDKAS 365

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             R                                     L   +  +  AR +   +  
Sbjct: 366 AQRP-----------------------------------RLVTVADDAAQARYVVEQVLE 390

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                          ++ K   VL R    +  +            I  V        D 
Sbjct: 391 AREQG----------VKLKSQAVLFRAAHHSAALEIEL----TRRNIPFVKFGGLKFLDS 436

Query: 416 LAIKDLMALGRFILSQEDDLSFVCML 441
           + +KD++A+ R+  +  D ++   ++
Sbjct: 437 VHVKDVLAVLRWAENPRDRVAGFRVV 462


>gi|241668452|ref|ZP_04756030.1| DNA/RNA helicase superfamily I protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876985|ref|ZP_05249695.1| DNA and RNA helicase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843006|gb|EET21420.1| DNA and RNA helicase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 686

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/627 (13%), Positives = 181/627 (28%), Gaps = 134/627 (21%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEIN-KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
               + S  L       K  IT++I+ ++    KE +   + +      + N     +  
Sbjct: 111 EIDAIISKLLKLYQKEFK--ITKDIDNERVETFKEYISLLKSDLSLTNKKLNELNTKEK- 167

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                L   +   + +  ++   + ++D+I     L +K   S      +    +HI+ID
Sbjct: 168 ----KLLDKVFLEFSKECEQQKAITYDDMIYLPAKLFEKDKNSIAQASSL---YSHIIID 220

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR-EKR 242
           E QD +  Q   ++ L  +             + AVGD  Q+IY + G+ P  +L   K+
Sbjct: 221 EYQDINQAQQFFLKCLVGENTY----------VMAVGDVDQTIYQWRGSTPYYMLEGFKK 270

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
             +              L  +FR    +  + + + +  +        +   +   +   
Sbjct: 271 DFKN--------VKQYSLSYTFRYGDLVSLMANNIITNNKKRHDNLCITYPKLNKTT--- 319

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                                               + S    + ++   +  +I +   
Sbjct: 320 ------------------------------------DISILDSSDKVVLKLKALIDSG-- 341

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   ++A DI +LVRK   T +           + ++        +      K + 
Sbjct: 342 --------VKASDIAILVRKYNSTTVFELS----CLYHDLAYSVVADKNIFSENLFKAIY 389

Query: 423 ALGRFILSQEDDLSFVCM----------LKSPLFNFSEDDIFKICTQRHETETVYE---Y 469
                + ++    +   +          L  P     +D    +  +  +  +       
Sbjct: 390 GYL-MLFNKGRGFAKHSIDQRIEFIKAMLDYPSLYLKKDVKQNLANKIAQDISASMNIIS 448

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSP---HDFFTLILGAKKGRQQFISRFGN-EV 525
                     K ++++        I             + IL      +Q     G    
Sbjct: 449 ELTKTVDKPFKEKNILAVSASWRAIFNNTRIKKSERAISFILETLDLEKQISKVSGETHS 508

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
                + ++      +   SSL E I  L +      +    + N+++IM++H AKGLE 
Sbjct: 509 SKSKLQIIDGMSSFAKGKKSSLSEFIELLYELYIKSNQQGENDPNQIQIMSMHRAKGLEW 568

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V + D     F                                   +        T E
Sbjct: 569 DYVVVHDATEGGF---------------------------------FGEKNSKACDETIE 595

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSN 672
           E  RL YV +TR    L I    + + 
Sbjct: 596 EERRLFYVAITRVKKHLFIVSSDDINR 622


>gi|213692896|ref|YP_002323482.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213524357|gb|ACJ53104.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320459071|dbj|BAJ69692.1| DNA helicase [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 1343

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 89/602 (14%), Positives = 174/602 (28%), Gaps = 102/602 (16%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK--MFKSTLASLTLAKYLNAHY 137
           P+      +I +   D     +   D+  +      TY       T     +   L   Y
Sbjct: 205 PEDEPKIPKIRRLKKDTDASWQAKLDDRAEHLHARCTYHCGALLETTRKRDILLQLVEAY 264

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            +AK++  + +F D  I    L+++      I  +  +  +H+L+DE QDTS  Q  ++ 
Sbjct: 265 AQAKRERNMAEFSDFTIAAYQLIERFPS---IGERTRRRYSHVLLDEYQDTSTTQAALLA 321

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
           +L       ++  +      AVGD  QSIY++ GA P      ++       +    +  
Sbjct: 322 ALFHVDASRRSAVN------AVGDPFQSIYAWRGASPGAFRMFQQDF-----HLSAGYKP 370

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
             L ++ R++  +L   + +                             +  L  +V   
Sbjct: 371 FPLSVTRRNSRIVLEAANNL------------------TLPLRSNPSRPSSSLMREVDVS 412

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                    E                 + R     I+            +    Q   + 
Sbjct: 413 SLDPMPDAPEGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQE--QMPGEQKAPVA 470

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           VL R +   P      +       ++        L +   I+DLMAL        D  S 
Sbjct: 471 VLFRSKSHMPEY----QAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSL 526

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHEL 491
           + +L +P F  S  D+  +     E       +++ +      +   +++  V++   + 
Sbjct: 527 MRLLATPRFTMSAADLTMLARFAEEQNMEQRFQSLVQAGLAQPDTSANEWAAVVREYRDQ 586

Query: 492 IHIAQFCS-------PHDFFTLI------------------------------------- 507
           +  A F                +                                     
Sbjct: 587 VANAVFLPDVLLRGDLVKLLERLSAHGRNAITRAAVMLSQVHDAVGRPLGDVIRAGIEAL 646

Query: 508 -LGAKKGRQQFISRFGNEVIDVL-----DEFLNFTLRNEQ----NSYSSLQELISELEQY 557
            L         +    +     L     D  ++      Q        SL   I+ ++  
Sbjct: 647 DLDIDTVLAGVLHNPQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHL 706

Query: 558 P--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                   +      +V +MTVH +KGLE   V +V   +  F       + I+   +  
Sbjct: 707 ASVEDEAASLPDAPVDVELMTVHQSKGLEWDAVAVVGLTAGGFPSNQGDHLKIVLDEHHT 766

Query: 616 PG 617
            G
Sbjct: 767 GG 768



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 23/143 (16%)

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ- 875
                   L+    RL E+       +   ++E ++   +       +++G++D + I   
Sbjct: 1197 DNATESKLVAWQRRLAESSWAKRIPA---WTERAIVVDVPGVG---LVNGKLDAVFIGGL 1250

Query: 876  Q------NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYV 927
                      + ++KT     +  +      +AQL +Y  +L         S+   L YV
Sbjct: 1251 DPSSTTVRFTVVDWKTGRRPTKPDDITRK--LAQLDMYRLLLAAVEGVELDSIDATLYYV 1308

Query: 928  SEPKVFIIPQNKLNKAFAEISTK 950
            SE      P   L +  A   TK
Sbjct: 1309 SE------PDEGLRELHARAKTK 1325


>gi|325914701|ref|ZP_08177042.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539203|gb|EGD10858.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC
           35937]
          Length = 584

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/578 (14%), Positives = 174/578 (30%), Gaps = 123/578 (21%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKK 162
            DE     + F T+           +A+ +   Y E   +    DF DL++     + K 
Sbjct: 121 FDEIASKVEYFKTHIDHSFGSPQNQMAEEVYLRYRELMAERGFHDFSDLLLLATRGMAKG 180

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                ++   +  +++++L DE QDT  IQ++ I                   +  VGD+
Sbjct: 181 AGHPDFV---VPYKVDYMLADEFQDTDDIQFKWI----------AEHIKHGAKVTVVGDD 227

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSI+ F  A      +     Q+          ++ L  ++R  A+IL    K+ +   
Sbjct: 228 DQSIFGFRFA---GGYKCMTEFQQL-----TDAQVVNLDTTYRCAAEILAPASKLIAYNA 279

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                +  +              G V++        ++                      
Sbjct: 280 ERLHKNLVTEN---------KAHGQVRVLRFPDRGAENTALT------------------ 312

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                      + ++                 +  VL R       +  + +       I
Sbjct: 313 -----------AAILDNG-----------DYGNWAVLARTNSQLEKVEQILQE----SGI 346

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--R 460
               + R    +       +++ + + +  D   F  +L+       E D+ +I ++   
Sbjct: 347 PSTRSGRTPFWELEVPALFLSVLKSLAA-GDMAGFDQLLR--RGGVDESDLTRITSRVMA 403

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                +  ++ +         + +   +   + +A+  S  D   L L     R  + ++
Sbjct: 404 SRPGALQRFLNEPDESDSPMVKRLASVVPTWVEMAKDPSRVDRVFLGLNMFMSRNMYGAQ 463

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                I+  +  L     +      +L++ +  +++           + + VR+MT+H +
Sbjct: 464 ASRATIERNNRLLASCEGSIARLSGTLKQRLQHIQRQAEGT----DEDSDAVRLMTLHAS 519

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE   V++V     V                                           
Sbjct: 520 KGLEFKHVWIVGCEQGVIPSNQSP------------------------------------ 543

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
               EE  RL YVGMTRA   L +    N+  +     
Sbjct: 544 ---VEEERRLFYVGMTRAKLNLFLSYQRNSDAQPSEFL 578


>gi|289191863|ref|YP_003457804.1| UvrD/REP helicase [Methanocaldococcus sp. FS406-22]
 gi|288938313|gb|ADC69068.1| UvrD/REP helicase [Methanocaldococcus sp. FS406-22]
          Length = 734

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/610 (12%), Positives = 166/610 (27%), Gaps = 106/610 (17%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           +      +  ++        K      A + LA     +Y +  + +   DF  L     
Sbjct: 181 QVATTLFNRIVEYLIDIEELKQSDEKWA-VQLADA-YENYVQLLEIHHRCDFSHLQKKFL 238

Query: 158 DLLKKRDVSAWIRYKIDQE---INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
           + L  +    +I+         I+H+L+DE QDT+ IQ  +   + E+            
Sbjct: 239 EFLNTKLGELFIKGDGSLRHPGISHVLVDEYQDTNPIQEAIYFKMAEN----------TH 288

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            L  VGD+ Q++Y F G   + ++       +      ++ + + L  ++RS  +I+   
Sbjct: 289 NLCVVGDDDQALYRFRGGTVECMVNFGNACHREWGITLERVNTVFLNNNYRSHREIVNYC 348

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +K  +     Q +                                        S      
Sbjct: 349 NKFITSFPVMQKIGARVKDKPELNPKSD------------------------ISGNYPAV 384

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           +     +    A   A  +  ++    +         +  D  +L++  ++        +
Sbjct: 385 AYITGRTIEETANNFANFVRYLLDEGVVS--------KPSDCALLMKSVRENRNWAEPFK 436

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
              N   I V         +   +   +     I+  + + +   +    +       + 
Sbjct: 437 KALNKVGIEVYNPRSRKFLEQEEVMAALGAFITIIDPKQN-ALRKVCNENIQRLVNRWVD 495

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                  E+  + +Y+           +++ + ++         +  +    IL      
Sbjct: 496 TYRNVASESPELRKYVDCSIKSIAK--RNLGERLN--------INISEILYRILAHPPFS 545

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE-----------------------LI 551
                    E    L +      +     Y +                            
Sbjct: 546 DWL---DDPERSYRLGKLTQLFEKYSSIPYDTPGSTRGLLKMSSKNNGEISFRWRQNFYN 602

Query: 552 SELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKGLESPVVFLVDTG-SQVFSHKHIKK 605
           S +                    + + IMT+H AKGLE P VF+          ++    
Sbjct: 603 SFIGLLSTEGLNDPEDEEIICPPDRLPIMTIHQAKGLEFPFVFVYGLRLKGDKPNESAII 662

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +           + P                 + TQ++  RL YV  +RA   LI  
Sbjct: 663 EEDLYKYRKIKYSINFTP----------------LERTQQDLIRLYYVAYSRAKYALIHL 706

Query: 666 KHSNTSNEKK 675
              N    K 
Sbjct: 707 VPRNHMGSKG 716


>gi|296453651|ref|YP_003660794.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183082|gb|ADG99963.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
          Length = 1340

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 86/593 (14%), Positives = 175/593 (29%), Gaps = 101/593 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + K +    +     + E +  R  ++   + ++T     +   L   Y +AK++  +
Sbjct: 215 KRLKKDTDASWQAKLDDRAEHLHARCAYHCGALLETTRK-RDILLQLVEAYAQAKRERNM 273

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +F D  I    L+++      I  +  +  +H+L+DE QDTS  Q  ++ +L       
Sbjct: 274 AEFSDFTIAAYQLIERFPS---IGERTRRRYSHVLLDEYQDTSTTQAALLAALFHVDASQ 330

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           ++  +      AVGD  QSIY++ GA P      ++       +    +    L ++ R+
Sbjct: 331 RSAVN------AVGDPFQSIYAWRGASPGAFRMFQQDF-----HLPAGYKPFPLSVTRRN 379

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           +  +L   + +                             +  L  +V            
Sbjct: 380 SRIVLEAANNL------------------TLPLRSNPSRPSSSLMREVDVSSLDPMPDAP 421

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           E                 + R     I+            +    Q   + VL R +   
Sbjct: 422 EGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQE--QMPGEQKVPVAVLFRSKSHM 479

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
           P      +       ++        L +   I+DLMAL        D  S + +L +P F
Sbjct: 480 PEY----QAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRF 535

Query: 447 NFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS- 499
             S  D+  +     E       + + +      +   +++  V++   + +  A F   
Sbjct: 536 TMSAADLTMLARFAEEQNMEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPD 595

Query: 500 ------PHDFFTLI--------------------------------------LGAKKGRQ 515
                        +                                      L       
Sbjct: 596 VLLRGDLVKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLA 655

Query: 516 QFISRFGNEVIDVL-----DEFLNFTLRNEQ----NSYSSLQELISELEQYP--PTIKRA 564
             +    +     L     D  ++      Q        SL   I+ ++          +
Sbjct: 656 GVLHNPQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAAS 715

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                 +V +MTVH +KGLE   V +V   +  F       + I+   +   G
Sbjct: 716 LPDAPVDVELMTVHQSKGLEWDAVAVVGLTAGGFPSNQGDHLKIVLDEHHTGG 768



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-Q----- 876
             L+    RL E+       +   ++E ++   +       +++G++D + I         
Sbjct: 1200 KLVAWQRRLAESSWAKRIPA---WTERAIVVDVPGVG---LVNGKLDAVFIGGLDPSSTT 1253

Query: 877  -NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVF 933
                + ++KT     +  +      +AQL +Y  +L         S+   L YVSE    
Sbjct: 1254 VRFTVVDWKTGRRPTKPDDITRK--LAQLDMYRLLLAAVEGVELDSIDATLYYVSE---- 1307

Query: 934  IIPQNKLNKAFAEISTK 950
              P   L +  A   TK
Sbjct: 1308 --PDEGLRELHARAKTK 1322


>gi|322690607|ref|YP_004220177.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320455463|dbj|BAJ66085.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 1343

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 86/593 (14%), Positives = 175/593 (29%), Gaps = 101/593 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + K +    +     + E +  R  ++   + ++T     +   L   Y +AK++  +
Sbjct: 215 KRLKKDTDASWQAKLDDRAEHLHARCTYHCGALLETTRK-RDILLQLVEAYAQAKRERNM 273

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +F D  I    L+++      I  +  +  +H+L+DE QDTS  Q  ++ +L       
Sbjct: 274 AEFSDFTIAAYQLIERFPS---IGERTRRRYSHVLLDEYQDTSTTQAALLAALFHVDASQ 330

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           ++  +      AVGD  QSIY++ GA P      ++       +    +    L ++ R+
Sbjct: 331 RSAVN------AVGDPFQSIYAWRGASPGAFRMFQQDF-----HLPAGYKPFPLSVTRRN 379

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           +  +L   + +                             +  L  +V            
Sbjct: 380 SRIVLEAANNL------------------TLPLRSNPSRPSSSLMREVDVSSLDPMPDAP 421

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           E                 + R     I+            +    Q   + VL R +   
Sbjct: 422 EGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQE--QMPGEQKAPVAVLFRSKSHM 479

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
           P      +       ++        L +   I+DLMAL        D  S + +L +P F
Sbjct: 480 PEY----QAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRF 535

Query: 447 NFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS- 499
             S  D+  +     E       + + +      +   +++  V++   + +  A F   
Sbjct: 536 TMSAADLTMLARFAEEQNMEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPD 595

Query: 500 ------PHDFFTLI--------------------------------------LGAKKGRQ 515
                        +                                      L       
Sbjct: 596 VLLRGDLVKLLERLSAHGRNAITWAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLA 655

Query: 516 QFISRFGNEVIDVL-----DEFLNFTLRNEQ----NSYSSLQELISELEQYP--PTIKRA 564
             +    +     L     D  ++      Q        SL   I+ ++          +
Sbjct: 656 GVLHNPQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAAS 715

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                 +V +MTVH +KGLE   V +V   +  F       + I+   +   G
Sbjct: 716 LPDAPVDVELMTVHQSKGLEWDAVAVVGLTAGGFPSNQGDHLKIVLDEHHTGG 768



 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 823  NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ------- 875
             L+    RL E+       +   ++E ++   +       +++G++D + I         
Sbjct: 1203 KLVAWQRRLAESSWAKRIPA---WTERAIVVDVPGVG---LVNGKLDAVFIGGLDPSSTT 1256

Query: 876  QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVF 933
                + ++KT     +  +      +AQL +Y  +L         S+   L YVSE    
Sbjct: 1257 ARFTVVDWKTGRRPTKPDDITRK--LAQLDMYRLLLAAVEGVELDSIDATLYYVSE---- 1310

Query: 934  IIPQNKLNKAFAEISTK 950
              P   L +  A   TK
Sbjct: 1311 --PDEGLRELHARAKTK 1325


>gi|302870676|ref|YP_003839313.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
 gi|302573535|gb|ADL49737.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029]
          Length = 1061

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 86/572 (15%), Positives = 148/572 (25%), Gaps = 150/572 (26%)

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
              Y    +K  ++D ++L+     LLK       +  +  +    I +DE QD   +Q+E
Sbjct: 634  ERYVALLRKRDLVDLDELLTLPVALLKGD---RKLVREYRERWKWIFVDEYQDVDAVQYE 690

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++R L+               L A+GD  Q+IYSF GA+    LR  +            
Sbjct: 691  LLRLLS----------PPDGNLCAIGDPDQAIYSFRGADVGYFLRFSQDF--------TD 732

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              ++ L  ++RS+A IL    +  +     +G   D                        
Sbjct: 733  ARLVRLNRNYRSSAPILAAAVQAIAPSSLVRGRRLDPARLDP------------------ 774

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                     P    + +       +     +   +       + +  I  +G+   +   
Sbjct: 775  -------EAPLVGRYAASSAYDEADFVVRTVDELVGGLSHRSLDSGRI--DGRTTSLSFS 825

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            DI VL R       I            I V       L D   +  +    R        
Sbjct: 826  DIAVLYRTDAQAAPIVDAL----ARANIPVQKRSHDRLRDRPGVPAIARELR-------- 873

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                                          ++   +++       +F   +  +      
Sbjct: 874  ------------------------HAGLDGSLAARVRQAGQILAERF--AVPTLDG---- 903

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            +    P D  T +          ++       D LD FLN                    
Sbjct: 904  SGAVRPEDVRTAV--------DLLTPLARRCGDDLDLFLNQ------------------- 936

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                     A       V ++T+H AKGLE PVVFLV     +   +             
Sbjct: 937  -LATGAEVDALDPRAEAVTLLTLHAAKGLEFPVVFLVGAEDGLLPLRWPGSEP------- 988

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                           E  RL +VG+TRA D+L +      +   
Sbjct: 989  -------------------------DDDAVAEERRLFFVGLTRAQDRLYVSHAGRRARHG 1023

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                      +                     
Sbjct: 1024 AERDTRPSPFLDVIDPALFERLDATEPRRPKD 1055


>gi|301511944|ref|ZP_07237181.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB058]
          Length = 469

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 156/480 (32%), Gaps = 92/480 (19%)

Query: 8   SLNESYELIYKDLWPLP-YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
           + +E    + + +       + S  + +    +         +A  L Q S     ++  
Sbjct: 65  AASEIVARVEQHVGAQAKGLRASTFHTFCMYLLRRN-----PQAFGLTQFSIIDRDDQLL 119

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                 F   +   + N++ +    +  DL    + +Q +  +        K        
Sbjct: 120 -----MFRLLRGKDKDNVLPKA--AELCDLYSYARNTQSKLSEAL-----LKQLPEAYEY 167

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-WIRYKIDQEINHILIDEV 185
            +    L   YE+ K++   LD++D++      L+  +    W+          +L+DE+
Sbjct: 168 KSQIAELMKTYEQRKRERNFLDYDDILSIVAVHLQNSEALTNWVAGFCQA----LLVDEM 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +QW +++ L                LF VGD+ QSIY F GA+ + +   K    
Sbjct: 224 QDTNPLQWALLQPLIG-----------KVKLFCVGDDAQSIYGFRGADFENIHSFKERIP 272

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                      I  L L++RST +IL + + + S                +   +  G+ 
Sbjct: 273 --------DAVIHTLDLNYRSTQEILDLSNWLLSHSP---------IDYQKQLQAHRGKG 315

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              QL        +                          A  IA  +            
Sbjct: 316 QKPQLHLFGNEFEE--------------------------ANWIAQDLIERHQQG----- 344

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                    D +VLVR       +       +    I         L +   +KD+++L 
Sbjct: 345 -----ANWYDHMVLVRSGYSARYLEGAFIAAE----IPYRFIGGVKLLESAHVKDVLSLL 395

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R + + +DDL+++  L +      +    K+  +      V E  Q+    G    Q ++
Sbjct: 396 RIVSNPQDDLAWMRFL-TLWDGIGDVGASKLAQELMSISEVEERCQRLERHGKVPLQAIL 454


>gi|283457707|ref|YP_003362293.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133708|dbj|BAI64473.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 1594

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 88/720 (12%), Positives = 169/720 (23%), Gaps = 67/720 (9%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH----YEEAKKKNCVLDFE 150
           D   +   +       R    T +  +     L   + + A     Y   K +  VLDF 
Sbjct: 258 DFCTEQLAAYAAVPDPRRETKTERDIQKVQRLLR-NRRVYARMAMSYARVKARMQVLDFG 316

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           DL+     + +       IR         +L+DE QDTS  Q  +  S+       +   
Sbjct: 317 DLMRFAARIAEADPA---IREGERARFKVVLLDEFQDTSHAQMSLFSSIYG---ADEAAG 370

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                + AVGD KQSIY F GA   ++    R    +          + L +++R+   +
Sbjct: 371 IPAHPVMAVGDPKQSIYGFRGASDGQMFSFYRHFPTKH------VQPLFLSIAWRNDISV 424

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           L   + V    +        +   I        +     + E      +           
Sbjct: 425 LNAANHVAEKLKEVPEWVRAADGDITAAQVPDLRPRCALVGEPGSPAFEQAAAGMVGRVD 484

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD-----------ILVL 379
             +       S    A  IA  I+ M               ++ D           I VL
Sbjct: 485 LTY-----HDSDREEAVAIAERIAAMRTQAVREYERAYAAHRSGDGSVRPHLKMPEIAVL 539

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R            R       I V       L     + DL++  R +       +   
Sbjct: 540 ARVHGQL----DPIRVECERLGIPVQQVGLGGLLSQPEVVDLVSALRVLADPNRSDALAR 595

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI----- 494
           +L    +     D+  +           E   +         +         I++     
Sbjct: 596 LLTGARWRLGAADMLALGDWAQSLVRERERALREQMALRMLAEAEDADDAAAINLQTEHL 655

Query: 495 -AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
            A      +     +    G    I     E ++ L +        +       Q     
Sbjct: 656 RAAQERLDETLKGAVEDSSGYASLI-----EAVENLPQ-----DGADGEPLYGEQYRGRR 705

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVH--TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             +      RA +     +R            E     L+D    V              
Sbjct: 706 FSRAALERLRAFAEQMRVLRAGLSEDLGTLLYEIERTMLLDIELAVRPGTDPLGSRANLD 765

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +      +   +    I +       +       R L      +     +       
Sbjct: 766 AFHEVAAAYGMSAPRINAMIYAGSDGVSAEEGDPGARRFLLSSGGVSYVMGFLAWLERAD 825

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
           +E+K        +   +   D    ++   ++    EW            T  +     +
Sbjct: 826 DEEK-------GLALGTVEPDPNAVQLMTMHAAKGLEWDHVLLPGLCGSATGGQTPNLWQ 878

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
              +                        +  +             +         H  ++
Sbjct: 879 MSANTALPWPLRGDREYLPSVLETAEEITAFEKAKDLEDYLADHKDDAAE-----HTGME 933



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/433 (7%), Positives = 97/433 (22%), Gaps = 60/433 (13%)

Query: 551  ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
               + +     K   +         TV  A  +E    F          +       + P
Sbjct: 1149 PEWIIEATEREKWRGAQPPQPGFSPTVAAALPIEVRGQFAQKNYEDRNPNLGAVLTAMWP 1208

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                +  +        +       +++  +    E    +       A ++  +      
Sbjct: 1209 FDPLERPVIWRWASDDALTQGTEAMLRRGQHEQLEREIEINSSSRREAVERAALAVELAV 1268

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
              + +           ++   +         ++ + +  I         +         +
Sbjct: 1269 GEDDQQRS-------AEATAGEGSNHPAPAASATHGESAIPEPLRQQAVDWEREADLLLL 1321

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                 +  +P++L  P     +    L+     T  +         ++    G  +H L+
Sbjct: 1322 MMGQTDPVLPEQL--PGHLSASTFIRLSEDPQGTVHQLMRPVPQRPSRAATIGTAVHALI 1379

Query: 791  QVIFTLPEHKRKNFITSYCTKNAKLWPAKEY---------------------KNLLLSIT 829
            +  F +                    P                            L    
Sbjct: 1380 EEHFGVAPTADPLEAPEAEDTVGVDLPGSAASTSPAEPADSSDSADPSESANPADLQEQD 1439

Query: 830  RL------------LENP--MMTTAMSCDSY-------SEVSVSGKINCPKKDIIISGRI 868
                          L+     +    +   +          +V   +    + + + GRI
Sbjct: 1440 EFTFEDDFEESESELDASVQRLWERFATSEWGSDEWKDRIWAVEYPVETHIEGVSLRGRI 1499

Query: 869  DQISISQQ----NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVC 922
            D +  ++        + ++K+             +   QL +Y              +  
Sbjct: 1500 DAVFRTEDEDGERWVLVDWKSGSRPK---MATMQSRRFQLGLYRIAFSRIMGVDPERIST 1556

Query: 923  LLIYVSEPKVFII 935
            + +Y+    V  +
Sbjct: 1557 VFVYLGGKGVAEV 1569



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 59/464 (12%), Positives = 118/464 (25%), Gaps = 78/464 (16%)

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI---QKFANCGISKF 481
             R    + D+     +  S  +    + +  +     + E +Y      ++F+   + + 
Sbjct: 655  LRAAQERLDETLKGAVEDSSGYASLIEAVENLPQDGADGEPLYGEQYRGRRFSRAALERL 714

Query: 482  QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLR 538
            +   + +  L               I        +   R G +       LD F      
Sbjct: 715  RAFAEQMRVLRA-GLSEDLGTLLYEIERTMLLDIELAVRPGTDPLGSRANLDAFHEVAAA 773

Query: 539  N--------------------------------EQNSYSSLQELISELEQYPPTIKRAH- 565
                                                  S +   ++ LE+     K    
Sbjct: 774  YGMSAPRINAMIYAGSDGVSAEEGDPGARRFLLSSGGVSYVMGFLAWLERADDEEKGLAL 833

Query: 566  ---SANHNEVRIMTVHTAKGLESPVVFLVDT----------------GSQVFSHKHIKKM 606
                 + N V++MT+H AKGLE   V L                    +           
Sbjct: 834  GTVEPDPNAVQLMTMHAAKGLEWDHVLLPGLCGSATGGQTPNLWQMSANTALPWPLRGDR 893

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
              +PS+ +         ++K   + ++D      + T  E  RL+YV MTRA + L +  
Sbjct: 894  EYLPSVLETAEEITAFEKAKDLEDYLADHKDDAAEHTGMEDRRLMYVAMTRARNLLAMSA 953

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
            +   S   +      +                +L   + K  +     +   P     E 
Sbjct: 954  YRWKSAAAQPQPVQPFW--------------EELMEMLFKSLFGMGTPTVDAPSVRFEET 999

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
             +T         +      P   D  +   LN      +     +  L++  T   G ++
Sbjct: 1000 MDTPWAAPQLVGMGLSYTMPNPADKRKKVHLNHVRRWVEQLAESKYRLTEPVTLVHGTVV 1059

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                     LP    +  +                +        
Sbjct: 1060 -----DPSNLPPAPDEAALLEDLELYPVDADELTPEQAEARANA 1098


>gi|309810393|ref|ZP_07704227.1| HRDC domain protein [Dermacoccus sp. Ellin185]
 gi|308435633|gb|EFP59431.1| HRDC domain protein [Dermacoccus sp. Ellin185]
          Length = 708

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/447 (14%), Positives = 130/447 (29%), Gaps = 77/447 (17%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK--YLNA 135
                 +  Q       DL  +++ ++   +         +      A L +     L  
Sbjct: 122 GEAAGRLRLQVDRTGLRDLAGEVEWAKVSMLTPETYPAAARRAGRQPADLDVTAMARLLD 181

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            YE+ K    V+DFED+++    +L +      I  ++  +  H ++DE QD + +Q  +
Sbjct: 182 AYEDVKSARGVIDFEDVLLLAAGILAE---REDIARQVRDQYRHFVVDEYQDVNTVQQYL 238

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           +     +           + L  VGD  Q+IYSF GA P+ +    +  +          
Sbjct: 239 LSLWVGE----------RKDLCVVGDPAQTIYSFTGASPRHLRTFAQRFE--------GA 280

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
           + +EL  ++RS   I+ + + V    + A G                           V 
Sbjct: 281 AKVELVRNYRSDPPIVRLANDVMKRADQAFG--------------------------SVT 314

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
            Q   +     +  T   D           AR +A  I  ++             ++A  
Sbjct: 315 LQAQREGGVTPKLVTYPDDPAE--------ARGVAKEIKRLLADG----------VKASG 356

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           I VL R    +            D  +               ++  + L R     +D  
Sbjct: 357 IAVLYRTNAQSEAFETAL----ADAGVPYQIRGGERFFHRDEVRKAVLLMRGAARSDDGS 412

Query: 436 SF-VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC-----GISKFQHVIKYIH 489
                ++   L                E     + + + +         ++ +  +  + 
Sbjct: 413 KPLPDVVADVLSGAGWSQQAPAAGASRERWESLQSLAELSKDVARTVPGARLRDFVAELD 472

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                             L A KG + 
Sbjct: 473 RRASEQHAPKVEGVTLASLHAAKGLEW 499



 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 91/359 (25%), Gaps = 55/359 (15%)

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH-ELIHIAQFCSPHDFFTLI 507
           +        T   +    Y+           + +  +  +              D    +
Sbjct: 363 TNAQSEAFETALADAGVPYQIRGGERFFHRDEVRKAVLLMRGAARSDDGSKPLPDVVADV 422

Query: 508 LGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAH 565
           L      QQ   +    E  + L      +    +    + L++ ++EL++         
Sbjct: 423 LSGAGWSQQAPAAGASRERWESLQSLAELSKDVARTVPGARLRDFVAELDRRASEQHAPK 482

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                 V + ++H AKGLE   VF V     +                            
Sbjct: 483 VEG---VTLASLHAAKGLEWDAVFFVGASDGLLP-------------------------- 513

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                    ++        EE  RL+YVG+TRA   L +    +     ++++     + 
Sbjct: 514 ---------IMMASAPEAIEEERRLMYVGITRARRFLQLSYSRSRHEGGRASRNPSRFLD 564

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                 D  V     T         +        ++     E  I +  +          
Sbjct: 565 GLGDSLDGAVVAATKTKRAAPAPKRSTAKCRTCGKDLYSAPERKIGRCTE---------C 615

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
           P   D  +   L         +  + + +          ++  + + +   P   R   
Sbjct: 616 PATYDEAQFEALREWRAAVAKRDKVPAFVVFTDA----TLV-AIAETLPANPAGLRAIA 669


>gi|56752512|ref|YP_173213.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
 gi|81300327|ref|YP_400535.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 7942]
 gi|56687471|dbj|BAD80693.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301]
 gi|81169208|gb|ABB57548.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 7942]
          Length = 766

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 100/596 (16%), Positives = 185/596 (31%), Gaps = 110/596 (18%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           LK  L+ S  +F ++     T    +    S          +E+ +++  +  F+DL+++
Sbjct: 150 LKGDLRFSAWQFEQLPTHLQTVATLEVWPESQRWLNVCVDAFEQCRQEARLRSFDDLLVD 209

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              LL        IR ++    + +++DE QD +  Q  +I  L            + + 
Sbjct: 210 ACRLLCAD---MGIRERVRSRFDFLIVDEYQDINRAQNLIISVL----------DEAQQN 256

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ Q+IY + GA P+ +L + R          +++    L  +FRS A  L + +
Sbjct: 257 LMVVGDDDQTIYEWRGARPQLILDKLRD---------RQWVQYTLDRNFRSRAPQLLLAN 307

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +              T   +H                                      
Sbjct: 308 ALIRHNRLRSPKQLQGTKAWQHHCEWRSFPSGSD-------------------------- 341

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                     A  IA  I                     ++++L+R    TPLI      
Sbjct: 342 ---------QAAAIAEQILEYRDRGKPL----------AEMVILIRTYAQTPLIEQQLIA 382

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED--------------DLSFVCML 441
            +  Y I               +K L+A   F  ++ +              D  F    
Sbjct: 383 AQLPYVIP----GSQPFYLRREVKLLLAYLEFAEAERNRVQNGLTPATRDRYDQLFRETS 438

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEY-----IQKFANCGISKFQHVIKYIHELIHIAQ 496
             P       ++  +  +  +   +          +         Q  + Y+  ++  AQ
Sbjct: 439 SRPSRYLKRPELLSMLQEALDNPHLPLATIISQRCRDRLGRNRSLQRWLDYLGWVLG-AQ 497

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
             S       I      R+  I    +         +   L+      +    L    E 
Sbjct: 498 PSSAAAAIAKIEQLIDLRRWIIDSDISPESGAQKALIIDALQAFAGDRAVQSWLQ---EM 554

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                +   S   + V ++TV  AKGLE   VF+ D  + ++     ++    P      
Sbjct: 555 AALQEQPPLSDEASGVNLLTVFKAKGLEWDTVFIPDLDAGIYPFGSSRESESGPG----- 609

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                      RN+        L +S QEE  R+LYV +TR+ + L +   +N  +
Sbjct: 610 -----------RNSFDPLSEVALDRSLQEEERRILYVALTRSINNLHLSSATNQRS 654


>gi|227541926|ref|ZP_03971975.1| superfamily I ATP-dependent helicase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182369|gb|EEI63341.1| superfamily I ATP-dependent helicase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 686

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 111/777 (14%), Positives = 197/777 (25%), Gaps = 177/777 (22%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
               ++  +      +D              + S +M        + A  L         
Sbjct: 57  RVLAVTFTKRAAGEMRDRLANMGIPRVQARTFHSAAMRQLAYFWPRFAGDLS-------- 108

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
              +SLL           +   ++ +  +   DL  +++ ++   I   +     + F  
Sbjct: 109 ---YSLLDKRLPLVAQAARSCGVSTDT-ETLRDLTGEIEWAKATLISPDNYPEQVETFHR 164

Query: 123 TLASL-TLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           T          + A YEE K ++   +LDF+D+I   N L    +    +  +  Q+   
Sbjct: 165 TPPVSGKEVGQVYAAYEELKYRHGMVLLDFDDVI---NQLATGIEKVQGVADEFRQQYRT 221

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +IDE QD +  Q  ++R+   D             L  VGD  Q+IYSF GA P  +L 
Sbjct: 222 FVIDEYQDVTPAQQRLVRAWLGD----------RDDLTVVGDANQTIYSFTGASPSFLLD 271

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             R   +           + L   +RST  I  V + V S                    
Sbjct: 272 FTRDYPEAV--------TVRLQRDYRSTPQITDVANAVISKARGR--------------- 308

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     +    +     +   Q   + +Y     +       A  IA  I  +I T
Sbjct: 309 ----------IAGTRLQLQGMKPPGQPPQFATYECEPDE-------AHAIAKKIQRLIET 351

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T             +I VL R    + +         +D  I               I+
Sbjct: 352 GTP----------PAEIAVLYRINAQSAVFEEAL----SDAGIVYQVRGGEGFFLRPEIR 397

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
             M+                +  +      +         R +  T  E   + A     
Sbjct: 398 QAMS------------GVTRLANNQRSGDIDPVEAVTAVLRRQGMTPEEPEGQGARERWQ 445

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
                +  + +L+      + H     +                                
Sbjct: 446 MQNAFLALVADLVRTDSTLTLHGVLQEL-------------------------------- 473

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                                       N N V + ++H+AKGLE   VFL         
Sbjct: 474 ------------------DRRKDAKQPPNVNGVTLASLHSAKGLEWDAVFLTGLQEGSLP 515

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            K   K                                   +   EE  RL YVG+TRA 
Sbjct: 516 IKQALK---------------------------------EGERQIEEERRLFYVGITRAR 542

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
             L +      S   ++ +     +       ++     K+  S           S    
Sbjct: 543 TFLHMSWSKARSEGGRATRERTRFLDGIVPKEEDNKPVKKMQRSTRCRVCGKPLRSPEEK 602

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                              +     +  K     PY++            +    ++
Sbjct: 603 VLGRCVTCPEEADQALFAALRAWRTAEAKERGKPPYMIFTDATLMAIAEAMPETDAE 659


>gi|311739795|ref|ZP_07713629.1| excision endonuclease subunit UvrD [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304868|gb|EFQ80937.1| excision endonuclease subunit UvrD [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 685

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 90/738 (12%), Positives = 191/738 (25%), Gaps = 166/738 (22%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A+   +    Q   +    L            +++          D+  +++ 
Sbjct: 83  AQTFHAAARRQLKYFWPQVAGDLPWQLLDNKFPLVARAVRSVGLDNSKDMIRDVLAEIEW 142

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKK--KNCVLDFEDLIINTNDL 159
           ++   +   D  +       +  +           YE++K   +   LDF+DL+++    
Sbjct: 143 AKSALVSAEDYESVIANTDRSAPADPAKVAEAFRRYEQSKATPEMMHLDFDDLLMHIAGA 202

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           ++       I     ++    ++DE QD + +Q  V+ +   +             L  V
Sbjct: 203 IEN---VPAIAETFREQYRTFVVDEYQDVTPLQQRVLNAWLGE----------RDDLTVV 249

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF+GA P  +L   R             ++++L   +RST  +  + ++V  
Sbjct: 250 GDANQTIYSFNGASPDYLLNFSRTYP--------DGTVVKLQRDYRSTPQVTDLANRVIG 301

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                                       ++L        +                    
Sbjct: 302 KATGR------------------AAGTRLELQGMREPGPEPTFK--------------AY 329

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            S  I A+ +A  +  ++             + A +I +L R    +            D
Sbjct: 330 ESEEIEAQEVAGQVLTLLDQG----------VPASEIAILYRINAQSEQFEQAL----AD 375

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +               I + + +      +ED       +                  
Sbjct: 376 AGVVYQVRGGEGFFRRPEILEAIRVLIAATRREDLPDDPVAIA----------------- 418

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                   E          ++ +   + ++ L+              I+           
Sbjct: 419 ---RAAFVELGLSSTEPQGAQARERWQSLNALVG---------LIEKIV----------- 455

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                               E      L  ++ EL +     +         V + TVH 
Sbjct: 456 --------------------ESTPGIDLNGVLGELRRRSTDKQAPAMEG---VTLATVHA 492

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFLV    ++    H  K                                  
Sbjct: 493 AKGLEWDAVFLVGLTEKLMPINHAIK---------------------------------A 519

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL YVG+TRA + L +      +   ++++     +       ++      
Sbjct: 520 GDEQVEEERRLFYVGITRAREHLALSWALAKTTGSRASRERTRFLDGIVPAAEDASGGSS 579

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                 +    +    T   +      +       +     +   S +  +   P  +  
Sbjct: 580 RARRPKRCRVCSGPLGTPAEKVIGRHEDCEGGGDEEVFAALRSWRSQVAREEKVPAYVIF 639

Query: 760 STIDTKGKTNLESLLSDN 777
           S    +  +         
Sbjct: 640 SDATLQAISEELPSDEAE 657


>gi|152992778|ref|YP_001358499.1| ATP-dependent DNA helicase UvrD [Sulfurovum sp. NBC37-1]
 gi|151424639|dbj|BAF72142.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp.
           NBC37-1]
          Length = 689

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 96/581 (16%), Positives = 181/581 (31%), Gaps = 90/581 (15%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            + +      +     +   +E+ K       F DL++     L++  +           
Sbjct: 157 LEKYPDHEVIMDAYMDIVQEFEKEKIDYGFASFNDLLLRIKSHLEENTI----------H 206

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
              +L+DE QDT+ +Q  +I +L             PR+LF VGD  QSIY+F+GA  + 
Sbjct: 207 FEEVLVDEYQDTNTLQGALIDTL------------KPRSLFCVGDYDQSIYAFNGANIEN 254

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +    +             ++  L  ++RSTA IL++ ++V    E       +     +
Sbjct: 255 IATFSKRYP--------DANVFTLKTNYRSTAPILSLANRVIERNERIYPKKLEVGRHGK 306

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
               R+       L+EQ  +   S  +    +           S+  I A      I   
Sbjct: 307 THPPRLLM--YKDLFEQYQAIAQSIKHTHVPNDNIAVIFRNNSSADGIEASLREVGIPCK 364

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
               T F + K+       + +LV  +     I              V            
Sbjct: 365 RKGGTSFFDAKEIKFLLDLLSLLVNPKDMMAFIHVFEYASG------VGSALSKEFFQCF 418

Query: 417 AIKDLMALGRFILSQ-EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
                    + +L     +L  +   K+      +DD       R +   +   +     
Sbjct: 419 LHFGNGNFMQGVLYPVNSELPKLNPNKNVQLGLFDDDHEIGSATRFKHLDLPHSVYGHPL 478

Query: 476 CGISKF-QHVIKYIHELIHIAQFCSPHDFFTLILGA---KKGRQQFISRFGNEVI----- 526
               K  Q  +K+ ++   +            IL      K     +     +       
Sbjct: 479 LKHPKIIQDGVKFFNDFYRLMNEIKSEKNPAKILRTAISSKLYSGIVEMLSTQRGRLKTG 538

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAK 581
           +V +E             + L +L  + ++         +     +    V ++TVH +K
Sbjct: 539 EVDEEKKKVARERILRKANLLLDLSRQYKELGRFVNAMVLGGGELSEGEGVNLLTVHASK 598

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE P V++VD     F ++ +                                      
Sbjct: 599 GLEFPEVYVVDLVDGRFPNRKM-------------------------------------M 621

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
           S+ EE  RL YV +TRA D+L +        +K   + + +
Sbjct: 622 SSIEEERRLFYVAVTRAKDKLYLSLAQYDKVKKIDYKPSQF 662


>gi|227486911|ref|ZP_03917227.1| superfamily I ATP-dependent helicase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092985|gb|EEI28297.1| superfamily I ATP-dependent helicase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 686

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 108/778 (13%), Positives = 193/778 (24%), Gaps = 178/778 (22%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
               ++  +      +D              + S +M        + A  L         
Sbjct: 57  RVLAVTFTKRAAGEMRDRLANMGIPRVQARTFHSAAMRQLAYFWPRFAGDLS-------- 108

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
              +SLL           +   ++ +  +   DL  +++ ++   I   +     + F  
Sbjct: 109 ---YSLLDKRLPLVAQAARSCGVSTDT-ETLRDLTGEIEWAKATLISPDNYPEQVETFHR 164

Query: 123 TLASL-TLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           T          + A YEE K ++   +LDF+D+I   N L    +    +  +  Q+   
Sbjct: 165 TPPVSGKEVGQVYAAYEELKYRHGMVLLDFDDVI---NQLATGIEKVQGVADEFRQQYRT 221

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            +IDE QD +  Q  ++R+   D             L  VGD  Q+IYSF GA P  +L 
Sbjct: 222 FVIDEYQDVTPAQQRLVRAWLGD----------RDDLTVVGDANQTIYSFTGASPSFLLD 271

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             R   +           + L   +RST  I  V + V S        +      ++   
Sbjct: 272 FTRDYPEAV--------TVRLQRDYRSTPQITDVANAVISKARGRIAGTRLQLQGMKPPG 323

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                                    S    A  IA  I  +I T
Sbjct: 324 QPP--------------------------------QFATYESEPDEAHAIAKKIQRLIET 351

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T             +I VL R    + +         +D  I               I+
Sbjct: 352 GTP----------PAEIAVLYRINAQSAVFEEAL----SDAGIVYQVRGGEGFFLRPEIR 397

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
             M+                +  +      +         R +  T  E   + A     
Sbjct: 398 QAMS------------GVTRLANNQRSGDIDPVEAVTAVLRRQGMTPEEPEGQGARERWQ 445

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
                +  + +L+      + H     +                                
Sbjct: 446 MQNAFLALVADLVRTDSTLTLHGVLQEL-------------------------------- 473

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                                       N N V + ++H+AKGLE   VFL         
Sbjct: 474 ------------------DRRKDAKQPPNVNGVTLASLHSAKGLEWDAVFLTGLQEGSLP 515

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            K   K                                   +   EE  RL YVG+TRA 
Sbjct: 516 IKQALK---------------------------------EGERQIEEERRLFYVGITRAR 542

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
             L +      S   ++ +      +      +E  K +K      +         +   
Sbjct: 543 TFLHMSWSKARSEGGRATRE-RTRFLDGIVPKEEDNKPVKKMQRSTRCRVCGKPLRSPEE 601

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
           +          +         +   +    +  +P  +  +                 
Sbjct: 602 KVLGRCITCPEEADQALFAALRAWRTAEAKERGKPPYMIFTDATLMAIAEAMPETDAE 659


>gi|289759337|ref|ZP_06518715.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T85]
 gi|289714901|gb|EFD78913.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T85]
          Length = 729

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/653 (12%), Positives = 188/653 (28%), Gaps = 99/653 (15%)

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A   A  I++ +    +        +    + V+VR       +               V
Sbjct: 39  AHAEAAMIADALRRAHLID-----GVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAV 93

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT------- 458
           G     L+   A++ L+ +        D    + +L  P+       + ++         
Sbjct: 94  GG---PLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRRTLQRARP 150

Query: 459 ---QRHETETVYEYIQKFANCGIS---KFQHVIKYIHELIHIAQFCS-----PHDFFTLI 507
               R   + + E +   A          + V   +       +  S     P       
Sbjct: 151 GQTSRKFGDLLVEVLGGDAPPSGPGSRALRRVRAVLTAAARCHRSGSLGGQDPRHTLWAA 210

Query: 508 LGAKKGRQQFISRFGN------EVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQY 557
                 ++++++   +      +    L+      + T     + S +SL+ L+  +   
Sbjct: 211 WQRSGLQRRWLAASEHGGAAAVQATRDLETVTALFDITDHYVSRTSGASLRGLVEHVTAL 270

Query: 558 PP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               ++   +A   +V +++ H A G E  +V +      ++ +   +   +      D 
Sbjct: 271 QLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDE 330

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK- 675
              +    S              +     E  RLL   M RA  +L++    + +     
Sbjct: 331 LDGVTKDASM-------------RAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGH 377

Query: 676 ---SNQRTWYDMVYDSFHNDERVKKIKLTNS--------------INKDEWIAYEWSTHH 718
                   ++++   +  + E V    ++                +      A + +   
Sbjct: 378 EAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRVVVCAPACAVDDADRD 437

Query: 719 PENTPLEREETI----KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
              T L R            +   +     S    D ++   L PST+       L  L 
Sbjct: 438 CAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLA 497

Query: 775 SDNQTF-------NRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLL 825
             +            G ++H L                  +      A+ + A E     
Sbjct: 498 ERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHR 557

Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD-------IIISGRIDQISISQ-QN 877
             I   ++      A S    ++V V   I+   +D       I + GR D++       
Sbjct: 558 AMIQAFVQ----WRAQSRSELTKVGVEVDIDGALEDGSGQARKIRLRGRADRLERDPAGR 613

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD---SYPNKSLVCLLIYV 927
           + I + KT      + +       AQL++Y+  + +      ++     L+YV
Sbjct: 614 LVIVDIKTGKTPVSKDDAQQ---HAQLAMYQLAVAEGLVRAGDEPGGARLVYV 663


>gi|84494609|ref|ZP_00993728.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
 gi|84384102|gb|EAP99982.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
          Length = 1047

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 108/1013 (10%), Positives = 275/1013 (27%), Gaps = 182/1013 (17%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYF----QVSDINKYVSLSMETGNPTILKKAQTLQQA 56
           L+++    +  +        +P   F      + ++      + +G    +   + L   
Sbjct: 77  LRDQVTARVGGTSTEPLARTFPSFGFGVLRAAAALDGDPPPRLLSGPEQDVVLRELLAGH 136

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
           +  + +  R+                 + T+    +  DL  +  +   +   + +    
Sbjct: 137 ASGESVGPRWPERVKL----------ALPTRAFRAELRDLLMRAVELGLDPDDLLEL--- 183

Query: 117 YKMFKSTLASLTLAKYLNAHYEE--AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
               +           L   Y+E  A       D                    +   + 
Sbjct: 184 --GVRHGRDEWVAGAELLREYDEVTALLTPGAFDPA---WILGAAASALAGDDDLARSLT 238

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             +  +++D+ Q+ +     ++  L                +  +GD   +  +F G +P
Sbjct: 239 AGLRLVVVDDAQEMTPAALRLLEVLRHVAPAAG--------IVLIGDPDSATQTFRGGDP 290

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             + RE                 + LP S R    +L+V + V         ++      
Sbjct: 291 TLLAREW--------AVLGDGPTVVLPRSHRLPEGLLSVTNAVAGHIGVLGDVAHRRAE- 341

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                                               +  +    E      A + A  I+
Sbjct: 342 ------------------------------------ACVEGGSSEVHLLRSASQEAGFIA 365

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILT 413
             +    +  +     +   D+ V+VR +  +       R       + V   +    + 
Sbjct: 366 ARLRAAHLLDD-----VPWSDMAVIVRGQSRSAG----LRRALQSSGVPVSAAEAELPVR 416

Query: 414 DHLAIKDLMALGRFILSQEDDLSFV-------CMLKSPLFNFSEDDIFKICTQRHETET- 465
           D  +++ L+ L + +       +          +L SPL      ++ ++       E  
Sbjct: 417 DEPSVRPLLTLLQVVADLALGRAEDVPVDVALDVLVSPLGAADPVELRRLRRALRREELD 476

Query: 466 ---------------VYEYIQKFANCGISKFQHVIKYIHE----LIHIAQFCSPHDFFTL 506
                          +   +           Q + + I         +     P      
Sbjct: 477 AGGSRTSDELIAEVLLRPAVHDRLGIEGRSVQRIGRMIRAGVEACGAVEGEWGPGVSAEG 536

Query: 507 ILGAKKGRQQFISRFGNEV----------IDVLDEFLNFTLRN----EQNSYSSLQELIS 552
           IL A     +   ++                 LD  L          E+   SS +  + 
Sbjct: 537 ILWAMWDASRLAGQWRETALGGGAAGARTDRDLDAVLAVLRAAATYGERLPGSSPEAFLQ 596

Query: 553 ELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            +           A +     V ++T  +A G + P+V +       +    ++   +  
Sbjct: 597 HVLGQDVPGDTLAARAPTGESVSLLTPQSAAGRQWPLVVVAGVQEGSWPDLRLRGSLL-- 654

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                    + + + ++  +      +    + + +  RL +V ++RAS  L++    + 
Sbjct: 655 ----GSQDLVDVVRGRAGGH------RAALAAVRHDETRLFHVAVSRASRSLLVTAVRSE 704

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS----INKDEWIAYEWSTHHPENTPLER 726
             +          +  D+   +       +T        + + ++ +        T L R
Sbjct: 705 DEQPSPYLDVVDPLPDDADRREASDWARPVTLPALVGALRRDVVSDDMRRRGGAITGLAR 764

Query: 727 EETIKQLMDEQKIPKKLF----SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--- 779
                    +      L        +    +P  + PS ID      L+  L+       
Sbjct: 765 LARAGVPGADPASWWVLHGLSDERPRRGPADPVRVGPSAIDGFTSCQLKWALTKVGGDGP 824

Query: 780 ----FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
                + G +IH++           R      +         + + K        +++  
Sbjct: 825 MIGQRDIGTLIHEIAAEGDADAATMRATLDERWPRLGLPQGWSTDLKR--RQAEGMVD-- 880

Query: 836 MMTTAMSCDS---YSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQ 891
            +      ++   +  ++   ++      I++SG +D++ +S    + + +YKT    P+
Sbjct: 881 RLARFFDENTAVGWQRLAAESRMKVELGRIVLSGTVDRLDVSPSGEVRVIDYKTGSSKPK 940

Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
             +        QL  Y+  +        +          +   +PQ+    A 
Sbjct: 941 ASDVPR---HGQLGAYQLAV--------IEGGF------EDVEVPQSSSGAAL 976


>gi|115374363|ref|ZP_01461647.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|310818971|ref|YP_003951329.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|115368673|gb|EAU67624.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392043|gb|ADO69502.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1]
          Length = 799

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 90/694 (12%), Positives = 188/694 (27%), Gaps = 73/694 (10%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E +  D             + V ++            + L  A       ER  +L   
Sbjct: 93  LEALLADRAGPLDADYRAFLRQVDINRFVTGTLDSLCEEALSGARG---PGERLPVLVEA 149

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKL--------------------KKSQDEFIKIRD 112
           F   +   ++  I +   +      + L                    +   D  ++   
Sbjct: 150 FAANQLLARRGEIYKTAERLGQPFLDYLGLYTNTGDPPETLGDMTRVVRMLVDRLVQDEV 209

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
               Y       A+      +   Y E+ + +  +DF  L     + L+   V   +   
Sbjct: 210 DLAEYVKPGPHQAARQAVHDIFKRYTESLRSSHQMDFPTLERVFLERLRADRVPDLV--- 266

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
               +  +L+DE QDT+ +Q  +   L            +   L  VGD+ QS+Y F GA
Sbjct: 267 --SHLGVLLVDEYQDTNPLQEHIYLELA---------RRTGAALTVVGDDDQSLYRFRGA 315

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             +     +          G    ++ L  ++RST +I++ ++       +         
Sbjct: 316 TIELFRDFQARVANALG--GPAPRLLYLTDNYRSTPEIVSFLNGFIQNDPDFASARIQPP 373

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             +     R  Q         +   +  +       + +         + + LA  I  +
Sbjct: 374 KPM----IRANQPSGGVPVLGMFRNNAEERAVDLADFLNQVFRQGGRPADARLAEPIRPS 429

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                       +         +     R    +  + +L R       I         L
Sbjct: 430 -----PHGGDLGDAVFLSHTVSEFRRGFRGTPPSERLPWLLRQNLEKQGILCFNPRGRAL 484

Query: 413 TDHLAIKDLMAL-GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            D   +   + L    + + E       ++       +          R +   +   + 
Sbjct: 485 KDIPEVGRALGLVLECLDAAEPGNEQGRIVADTP--LTHAARSVFLRWRQDARALLATLP 542

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
                     Q V+          Q          +L           +   E    L+ 
Sbjct: 543 PAVIPRGESLQEVVARWQRFARHGQGVGTEWPLLDVLYNLLPW-MPAFQDDPEHQVYLEA 601

Query: 532 FLNFTLRN-------------EQNSYSSLQELISELEQYPPTIKRAHSAN------HNEV 572
                 +              E +   S++ +I ++             +         +
Sbjct: 602 VSRAAAQATAFSRHRSLIFREEPHRTRSIRAVIQDVLAPIADDLVEVDEDIMPSVPRGRL 661

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H AKGLE P+V + D  S   S+   ++    P              S +    +
Sbjct: 662 NLMTIHQAKGLEFPLVIV-DIASDFLSNHPKQRFRRFPDEPSPVTRLEDDLASCTPIGPL 720

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                 + + + E+  RL YV  +R    L++  
Sbjct: 721 RTARTAI-QRSFEDLIRLYYVAYSRPQSVLLLVG 753


>gi|300865249|ref|ZP_07110063.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336722|emb|CBN55213.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 799

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 77/572 (13%), Positives = 172/572 (30%), Gaps = 66/572 (11%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                  L ++  L   Y+   +   ++D++++I+    +L+             +++  
Sbjct: 245 ADDNYQVLAVSAGLYKKYQALLRSQNLIDYDEMILAAIRVLENPAA----LAMEQKQVFA 300

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVL 238
           +  DE QD++ +Q +++  L  D          P     VGD  Q+I S F  A+P    
Sbjct: 301 VFEDEAQDSTPLQTKLLEILATDA----AHPHLPPNFIRVGDPNQAINSTFTPADP---- 352

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                 ++       + ++  +  + RST  I+   + V     +++   ++       +
Sbjct: 353 ---IYFRQFCEACQVEGNLATMNQAGRSTKIIIDAANFVVEWVNSSKLTGQE-------K 402

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
             R   +  V           +     +         +    S  ++A R+    +++  
Sbjct: 403 PFRNQSILAV----GNNDPQANANPAPEGGGLEICQPIDIYDSIRLIADRVLKVFADLEN 458

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT--------RFLKNDYKISVVGNDRF 410
                              +LVR+ K    +  +         +F  + Y I V      
Sbjct: 459 K--------------SSAAILVRENKQGRFVREVLENPLKYNMKFDLSKYGIRVEDVSER 504

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF--KICTQRHETETVYE 468
                +   +++AL +FI            LK      S+ ++   +           + 
Sbjct: 505 ERYSQVP-SEILALLQFIDRPHSPDYLKAALKV----LSDRELIPKQDYNALAIQSEQFL 559

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
           Y          + +    +   L+H       +   + +  + +  Q  ++        +
Sbjct: 560 YPGPLDPPQSDRVRKCRYFCCSLLHAKLELPIYQLISFLALSLQYNQAELATADKLGERI 619

Query: 529 LDEF-----LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
             +      ++  L        S +    E+       +        +V I+T+H AKGL
Sbjct: 620 FKQTAGNNSMSAILDALIEIVGSERFEPVEIPLETEQDREHPYVRKRQVTIITMHKAKGL 679

Query: 584 ESPVVFLVDTGSQVFSH-----KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
           +   VFL                  + +                   +     ++   + 
Sbjct: 680 DWDYVFLPFLQETTIPGGLRVFPQSRFLGDFTLAEVARAQIRASLHQQFPLPDIATAWEL 739

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                  E  RLLYV MTRA   L +      
Sbjct: 740 AGYLKMSEEFRLLYVAMTRAKRLLWMAAEKKA 771


>gi|238060919|ref|ZP_04605628.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
 gi|237882730|gb|EEP71558.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
          Length = 719

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 83/674 (12%), Positives = 172/674 (25%), Gaps = 159/674 (23%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              K  + T         +   YE+ K+ N V+DFED++      +++      +  ++ 
Sbjct: 162 AAAKALRDTPHEPAKVAEVFVAYEKLKRANGVIDFEDMLRAAVWGIEEHPD---VAEQVR 218

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +  H ++DE QD + +Q  ++ +                 L  VGD  Q+IYSF GA  
Sbjct: 219 GQYRHFVVDEYQDVNPLQQRLLEAWLG----------GRDDLTVVGDASQTIYSFTGATS 268

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             ++   R          +  +++ L   +RST  ++ + + V S     +         
Sbjct: 269 TYLVDFPRR--------HRGATVLRLVRDYRSTPQVVGLANAVISQARGTEA-------- 312

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                               +     +    +     + D   +       A  +A    
Sbjct: 313 -----------------RLRLELRGQRPPGPEPDLRIFTDEPAE-------AAAVATRCR 348

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++   T           A++I VL R    +          +    +  V        +
Sbjct: 349 ALVDAGTP----------AREIAVLFRTNAQSEAYEKALTEAE----VPYVVQGAERFFE 394

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              ++  M   R                    +   +   +       +   +      A
Sbjct: 395 RAEVRQAMVALRAAT----------------RSIPGETPLRDAVVEGLSAVGWAPDAAPA 438

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                +    +  +  L        P                            +   + 
Sbjct: 439 GGAARERWEALAALVGLADEYAATPPV-------------------LPIGEAAAVQRLV- 478

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                      +L +   EL +               V + ++H+AKGLE   VFLV   
Sbjct: 479 -----------TLADFNDELARRAAQQHVPTVEG---VTLASLHSAKGLEWDAVFLVGLS 524

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                  + +                                        EE  RLLYVG
Sbjct: 525 EGTLPTTYART-----------------------------------AEQVEEERRLLYVG 549

Query: 655 MTRASDQLIIC-KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           +TRA + L +    + +   +      +   +  S    ER           +++ I+  
Sbjct: 550 ITRAREWLWLSYAVARSPGGRARRPSRFLPQLDRSGGGTERAGAAPKRAERRRNQVISCR 609

Query: 714 WSTHHPENTPLERE------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
                    P  +        +       +++               Y++      T   
Sbjct: 610 ICGATLLAGPDRKLGRCPACPSDIDEDLYERLRDWRARVAAAQKVPAYVVFTDATITALA 669

Query: 768 TNLESLLSDNQTFN 781
                   +     
Sbjct: 670 ERRPGRREELIAIA 683


>gi|168184751|ref|ZP_02619415.1| UvrD/REP helicase [Clostridium botulinum Bf]
 gi|182672150|gb|EDT84111.1| UvrD/REP helicase [Clostridium botulinum Bf]
          Length = 697

 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 84/541 (15%), Positives = 194/541 (35%), Gaps = 116/541 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +  +Y + +K    +DF+D++I  N+LL        I+     +  ++ IDE QD S +
Sbjct: 189 DIYNNYYKTQKTYNYIDFDDMLIIANNLLAAN---KEIQSIYVNKFEYMQIDEAQDCSPL 245

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  L          +     L   GD+ Q+IY F G++PK +L   +  +      
Sbjct: 246 QYKIIEKL----------NKDKYNLAFFGDDDQTIYEFQGSDPKLLLNLPKQYKN----- 290

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I +  +FRS  +++   +   +  +        ++             G+++L 
Sbjct: 291 ---TQVIYMDQNFRSYKNLVKYNEIFINKNKERFNKKMIASN---------DAEGSIELR 338

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +  ++   ++                                             
Sbjct: 339 NFTDFESSNKTIFEKLI-----------------------------------------PN 357

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILS 430
              +I +L R       +         ++ I +    +F  L+ +  IKD++ +  F  +
Sbjct: 358 LNGNIGILYRNNMSAIPMINY----CINHNIHINIKAKFPSLSTNKIIKDILRIYYFSQN 413

Query: 431 QED-DLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEYIQKFA---NCGISKFQH 483
             + +L    + K      S+  + K+C Q +E      +++Y++++    +      + 
Sbjct: 414 MNNAELYLQIVYKIKPIYISKSMLNKVCKQYNEFSNDLNIFDYMRRYHSSLDIPEYMLEK 473

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +     +   +A+  +P    + I    + ++   +   ++        +   ++    +
Sbjct: 474 INDICFDFEQLAKHTNPAKIISFIFNILEYKEYLNNDKKSDSQ------IVDIIKYIAKT 527

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            +++ E I  +++    I + +  + N + + T+H++KGLE   V + D  + +F   + 
Sbjct: 528 TNTINEFIIRIKEIDNVILQENDEDAN-ITLNTIHSSKGLEWSNVIITDINNNIFDTFNK 586

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           +K   +P+                                 E   RLLYVG TRA   L 
Sbjct: 587 QKEEKIPT--------------------------EAVNEMIESTRRLLYVGCTRAKANLY 620

Query: 664 I 664
           I
Sbjct: 621 I 621


>gi|255323795|ref|ZP_05364921.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum
           SK141]
 gi|255298975|gb|EET78266.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum
           SK141]
          Length = 685

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 90/738 (12%), Positives = 192/738 (26%), Gaps = 166/738 (22%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A+   +    Q   +    L            +++          D+  +++ 
Sbjct: 83  AQTFHAAARRQLKYFWPQVAGDLPWQLLDNKFPLVARAVRSVGLDNSKDMIRDVLAEIEW 142

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCV--LDFEDLIINTNDL 159
           ++   +   D  +       +  +           YE++K    +  LDF+DL+++    
Sbjct: 143 AKSALVSAEDYESVIANTDRSAPADPAKVAEAFRRYEQSKATPDMMHLDFDDLLMHIAGA 202

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           ++       I     ++    ++DE QD + +Q  V+ +   +             L  V
Sbjct: 203 IEN---VPAIAETFREQYRTFVVDEYQDVTPLQQRVLNAWLGE----------RDDLTVV 249

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF+GA P  +L   R             ++++L   +RST  +  + ++V  
Sbjct: 250 GDANQTIYSFNGASPDYLLNFSRTYP--------DGTVVKLQRDYRSTPQVTDLANRVIG 301

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                                       ++L        +                    
Sbjct: 302 KATGR------------------AAGTRLELQGMREPGPEPTFK--------------AY 329

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            S  I A+ +A  +  ++             + A +I +L R    +            D
Sbjct: 330 ESEEIEAQEVAGQVLTLLDQG----------VPASEIAILYRINAQSEQFEQAL----AD 375

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +               I + + +      +ED       +                  
Sbjct: 376 AGVVYQVRGGEGFFRRPEILEAIRVLIAATRREDLPDDPVAIA----------------- 418

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                   E          ++ +   + ++ L+              I+           
Sbjct: 419 ---RAAFVELGLSSTEPQGAQARERWQSLNALVG---------LIEKIV----------- 455

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                               E      L  ++ EL +     +         V + TVH 
Sbjct: 456 --------------------ESTPGIDLNGVLGELRRRSTDKQAPAMEG---VTLATVHA 492

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFLV    ++    H  K                                  
Sbjct: 493 AKGLEWDAVFLVGLTEKLMPINHAIK---------------------------------A 519

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL YVG+TRA + L +      +   ++++     +       ++      
Sbjct: 520 GDEQVEEERRLFYVGITRAREHLALSWALAKTTGSRASRERTRFLDGIVPAAEDAAGGGS 579

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
            +    +    +    T   +      +       +     +   S +  +   P  +  
Sbjct: 580 RSRRPKRCRVCSGPLGTPAEKVIGRHEDCEGGGDEEVFAALRSWRSQVAREEKVPAYVIF 639

Query: 760 STIDTKGKTNLESLLSDN 777
           S    +  +         
Sbjct: 640 SDATLQAISEELPSDEAE 657


>gi|330469972|ref|YP_004407715.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328812943|gb|AEB47115.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 712

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 90/735 (12%), Positives = 189/735 (25%), Gaps = 156/735 (21%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQ---ASQTQCIEERFSLLSSFFLTQKFTPQ 81
               +++   ++     G       A  L+Q    +           L    +       
Sbjct: 68  ARAAAELRHRLAQLGVAGVQARTFHAAALRQVRYFAPRLLDGRAMPELLDSKVRLVTLAA 127

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEF-IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
                +     + DL  +++ ++              K  + T         + A YE+ 
Sbjct: 128 ARAGLRADRTAARDLAGEIEWAKSSLVEPGEYVVAAAKALRETPHEPVKVAEVFAAYEKL 187

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           K+   V+DFED++      +++    A +  ++  +  H ++DE QD + +Q  ++ +  
Sbjct: 188 KRTTGVIDFEDVLRAAVWGIEEH---ADVAEQVRNQYRHFVVDEYQDVNPLQQRLLDAWL 244

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                          +  VGD  Q+IYSF GA    ++   R          +  +++ L
Sbjct: 245 G----------GRDDVTVVGDASQTIYSFTGATSSYLVDFPRR--------HRGATVVRL 286

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              +RST  ++ + + V S                             +L  ++V Q  +
Sbjct: 287 VRDYRSTPQVVGLANAVISQAR----------------------GTEARLRLELVGQRPA 324

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              P+   +T                   A     ++   T             +I VL 
Sbjct: 325 GPAPEVRIFTDEAAEANAV----------AARCRALVDAGTPAH----------EIAVLF 364

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +               +  V        +   ++  M   R              
Sbjct: 365 RTNAQSEAYEKALAE----SGVPYVVQGADRFFERPEVRQAMVAMRAAT----------- 409

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                 +   +               +      +       +   + +  L+ +A+  + 
Sbjct: 410 -----RSIPGETPLAAAVVEALAAVGW---TPDSPPPGGAARERWEALAALVQLAEEYAA 461

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                                         + +            +L +   EL +    
Sbjct: 462 TP----------------------------QLMPLGAAATVERPVTLADFTDELARRAAQ 493

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                    + V + ++H+AKGLE   VFLV                             
Sbjct: 494 QHAPTV---DGVTLASLHSAKGLEWDAVFLVGLAEGTLP--------------------- 529

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                   EE  RLLYVG+TRA   L +   S  S   ++ +  
Sbjct: 530 --------------TTYARTAEQVEEERRLLYVGITRARQWLWLSYASARSPGGRARRPC 575

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
            +     +    ER    +      +                     +  +       I 
Sbjct: 576 RFLPQLSASGTTERAGGTRSAPGAQRSATRIVSCRICGTTLLAGPDRKLGRCATCPSDID 635

Query: 741 KKLFSPIKNDINEPY 755
            +L   ++   +   
Sbjct: 636 DELHERLREWRSRVA 650


>gi|291520408|emb|CBK75629.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Butyrivibrio
           fibrisolvens 16/4]
          Length = 310

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 110/318 (34%), Gaps = 34/318 (10%)

Query: 155 NTNDLLKK----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
              ++L+           +  ++      I++DE QD++ +Q +++ ++T          
Sbjct: 1   MALEILRDKNSPNHEKRPVAIELSNHFKEIMVDEYQDSNELQEQILTAITS--------- 51

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                 F VGD KQSIY+F  A PK              +       I+L  +FRS  ++
Sbjct: 52  --GNNYFTVGDVKQSIYAFRQASPKL---FIDKFNSYPLDDSADSKRIDLDNNFRSRGEV 106

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           L   +KVF+          +       +       G          +            +
Sbjct: 107 LNFCNKVFAPLMQPDMGGVEYDEKAALKVGDDKFKG--------DPKDYESEIIIATQDS 158

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIF-----SNGKKRVIQAKDILVLVRKRKD 385
              D L  E   S+ A  +A  I  +   +         +   R ++  D+++L+     
Sbjct: 159 EAMDELNIEDGDSLEALVVAKRIKELRADNFQVSYKDGDDRFLRPMKYSDVVILMSAVSG 218

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                     +  +  I     +     D   ++ ++++   I +  +D+    +L SP+
Sbjct: 219 ---HGEKFVNILKEQGIPAYLAEETGFFDREEVQTVLSMLTVIDNPFNDIPLAAVLHSPM 275

Query: 446 FNFSEDDIFKICTQRHET 463
           F FS + + +I     ++
Sbjct: 276 FGFSSNRLAQIRATDGDS 293


>gi|305679906|ref|ZP_07402716.1| UvrD/REP helicase [Corynebacterium matruchotii ATCC 14266]
 gi|305660526|gb|EFM50023.1| UvrD/REP helicase [Corynebacterium matruchotii ATCC 14266]
          Length = 1079

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 121/979 (12%), Positives = 252/979 (25%), Gaps = 158/979 (16%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R   S  +S   + + +  L +  +  +     L + TG        + LQ  S+    
Sbjct: 111 ARVATSHYKSAGTMVRSVHSLAFALLRRMR-DEKLRLITGAEQDAVIRELLQGHSELTGE 169

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            ++               +  I+     +    L++ L ++ +    +          + 
Sbjct: 170 GQQEQGPQVPITIWPEECRDGIVMVGFARG---LRDFLLRTVER--GLGPEDLERLGEEH 224

Query: 123 TLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                  A      YE+         L   +L+    +     DV   I        + +
Sbjct: 225 HRPMWVAAGKFLREYEQVMSLGGTHSLSASELVSMALE----HDVPPEI------SYSTV 274

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++D+ Q       E++    +                  GD  QS++ F GA P+     
Sbjct: 275 IVDDAQHLDPKSAELVARFIDQANFA----------VIAGDPDQSVFRFRGARPQ----- 319

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            + L  S+R                                  +
Sbjct: 320 -------FLQHHPVDHELRLHTSYR--------------------------------VQA 340

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN--MIG 358
           R G  G                  +        D   ++ +  + +  +   I    +  
Sbjct: 341 RPGAPGVHFHRADSTGNMFEFVADRIRRARLIDDVQWRDIAVVVRSVGMITPIRRALLAA 400

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
              +  +    V+  + I+  +               L+      + G D   L   L  
Sbjct: 401 GVPVHIDPTDIVLSQQRIVSALILAVRAVHHGLTLAELEELALGPIGGADAVTLRRLLRG 460

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
              + L R         +     ++P    +   +  +     E E     + +      
Sbjct: 461 LRQVELRR-------TGAVAAAFQTP----TRRSLEVLSELVLEPEPDPGLVAEVEQVLT 509

Query: 479 SKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFIS------RFGNEVIDVLD- 530
            + Q ++  I ++I    Q  S  +    I  A    +   +        G++    LD 
Sbjct: 510 DREQDILGRIRQVIAAGRQGGSVEEVLWEIWSATNLDKHLSAVSMRGGAAGSQADRDLDA 569

Query: 531 --EFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLES 585
                +      E+   S++   I+ +E+               + V I+T H   G E 
Sbjct: 570 VMALFDAAGDWVERRPNSTIDAFITHIEEQELPTGVRDRRLVVPDAVNIVTAHATSGQEW 629

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V +       +                D             + I              
Sbjct: 630 HTVIICGVQEDSWPSLSETGTLFGQEELVDL----------IDDGIAPGTTIARVTEQLR 679

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKK-SNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           E  RL ++  +RA++ LII    +    +     R   D +      D    + ++    
Sbjct: 680 EERRLFHMATSRATNTLIITAVDDPDAAEPQEPSRFVRDYMQPDSPEDPWEPQERVVGEQ 739

Query: 705 N---------------KDEWIAYEWSTHHPENTPLEREETIKQLM---------DEQKIP 740
                                       +P+ T   R +  +QL                
Sbjct: 740 QIDVDNPLTYTRLLSAPAIVAELRRVVTNPDETQRARNQAARQLARLAEAGVPGAHPDQW 799

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-------QTFNRGLIIHKLLQVI 793
             +  P          L+PS I+      L + +S             RG ++H   + +
Sbjct: 800 WGIAGPSTTRSLPVSSLSPSRIEAGMACPLRATMSRIFTEEELVFPLLRGRLLHAFAEAV 859

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-----PMMTTAMSCDSYSE 848
               +            +     P     + L +   +L+                   E
Sbjct: 860 ALNVDSDVARLKIMDAYQEILAAPIWLRSHRLDTWRTVLDRTKMWIETHRHIF-EQVGVE 918

Query: 849 VSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYK--THHHVPQEIEHIPYTHIAQLS 905
           V     I    + + + GRID++  +   +  I ++K  T+H   + I         QL 
Sbjct: 919 VEAEVTIA---EGMKLRGRIDRLEKTMDGDYHIVDFKSGTNHPSEKTIAD-----HIQLL 970

Query: 906 IYEKIL-KDSYPNKSLVCL 923
            Y+ IL    +    +   
Sbjct: 971 TYQLILHHGVFDGTKIRTA 989


>gi|309389853|gb|ADO77733.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 741

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 94/669 (14%), Positives = 212/669 (31%), Gaps = 80/669 (11%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ------KNIITQEINKKSPDLKE 98
              +  +  ++    + +  +++  +   L Q F  +         + +      P    
Sbjct: 108 QDFELIEAGRRYRWIKDLSRKWAGENGDLLKQFFNLEQNSYKFDKYLKKWKEDDFPAFVA 167

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            +       +   +       + +  A   LT A  + + YE    +  +LDF+DL+  +
Sbjct: 168 SMISYFKLKLLAGEELKNMVKYSNLKAANILTPAAEIFSEYEFRLAQAGLLDFDDLVQQS 227

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             +LK+         +I      +  DE QD++  Q E++  L                L
Sbjct: 228 LKMLKEDP---EFAERIGSNYAFVFEDEAQDSNQAQEEMLYLLAG----------KDNNL 274

Query: 217 FAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             VGD  Q+I   F  ++P       +          +   +  + +S RS+ DI+ + +
Sbjct: 275 VRVGDSNQAITGTFTLSDPDIFRSYCK---------KEAVKVETMAVSSRSSQDIIDLAN 325

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +    +      E      ++  +                  + + +  +    ++ D 
Sbjct: 326 YLVDWSQKEFSEREIEPLEKKYIQATAAD----------DPAPNPKVSGYRIGNKAFKDW 375

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             ++   +  A R A                       +   +L+        +      
Sbjct: 376 KTEKKFIARQALRKALE------------------DNKETTAILMPTGWQLEELAREINN 417

Query: 396 LKNDYKISVVGNDRFILTD---------HLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
           L  +++++   +    LT+           A  + + L    + Q++DL  V +L+  L 
Sbjct: 418 LGGEFQLAGSSSKDVFLTELEVVLKFLTSPAASENLKLLFVEIFQKEDLDLVQLLEDLLA 477

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF--- 503
                D+    +  +      E+ ++ A   + K    +  +   +  +    P +    
Sbjct: 478 EKDNQDLIFPLSGLNRDNFRLEFKKRAAFEPLFK---SLVQLQGWLEASMELPPDELVLF 534

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
               L     +         E   +L+E   + L         +++ I +  +   T   
Sbjct: 535 LAERLKLSGKKLALAQNLALEFGRLLNENPGWRLDQLTAELPEIRDRIKQFAET-LTEME 593

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
              +  ++V + T+H AKG+E   VF+    S  F H +           ++        
Sbjct: 594 GFESKPDQVTLSTLHKAKGMEWDTVFIGSLTSSHFQHDNDDYFMGEKFYLNEEIKNPKAS 653

Query: 624 QSKSRNNIVSDLIKH-----LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                  I+++  +       ++    E  RLLYVG+TRA   L +  H    N  K   
Sbjct: 654 ARAELEYILNEKKERNVDYKARQKLIAERVRLLYVGLTRARKNLFLSTHLKKGNWDKEPA 713

Query: 679 RTWYDMVYD 687
             +  +   
Sbjct: 714 FMFKALAEF 722


>gi|326328709|ref|ZP_08195048.1| exodeoxyribonuclease V, beta subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325953519|gb|EGD45520.1| exodeoxyribonuclease V, beta subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 579

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 155/453 (34%), Gaps = 51/453 (11%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSL----SMETGNPTILKKAQTLQQASQTQ 60
             +  +E      +    L  F  + I              G          L ++    
Sbjct: 95  LDVPDDEVRVRHERVRDALASFDGATIATTHQFCQLVLRSLGVAGDTDAGAELVESLDEL 154

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
            +E    L   +F       ++     + +      +  ++  Q                
Sbjct: 155 VVEVVDDLYLKWF----GEARERPPF-DRDDALGLARTAVEDPQSVLAPAPAEDPVAGAR 209

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                 +  A+ +    +  K+   VL ++DL+      L+     A  R ++ Q    +
Sbjct: 210 ------VRFAEAVRDEVDRRKQMRGVLSYDDLLSRLAVALEDASAPA--RARMRQRWKIV 261

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT  +QW+V+              S   TL  +GD KQ+IY+F G +    L  
Sbjct: 262 LVDEFQDTDPVQWQVLSR----------AFSDHATLVLIGDPKQAIYAFRGGDVFTYLAA 311

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            R  + +AT          L  ++RS A ++  +  V       +G +  S   + H   
Sbjct: 312 ARTAETQAT----------LDTNWRSDAPLVERLQVVL------RGAALGSPEIVVHD-V 354

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
           +    G+  +     S    +   +     +    +    + + +AR +A  I+ ++G+D
Sbjct: 355 KAHHTGSRLVGAPHPSPFRIRRVGRSGFKLTRGKMVTAGDARNHIARDLAGDIAELLGSD 414

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             + +   R +QA DI V+V  R    L+  + +     + I  V      +    A +D
Sbjct: 415 ATWCD---RPVQAGDIAVIVAIRSHGLLVQRVLQE----HGIPAVMAGGGDVFLTPAGED 467

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            +AL + + S            S  F ++  ++
Sbjct: 468 WLALLQALDSPHRAPLVRAAGLSVFFGYTASEL 500


>gi|262361073|gb|ACY57794.1| exodeoxyribonuclease V beta chain [Yersinia pestis D106004]
          Length = 552

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/417 (15%), Positives = 145/417 (34%), Gaps = 51/417 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +   +  L         +  +L   +G       ++ L    +   +             
Sbjct: 165 VVTQIDALKAEWRLAAPELEALISRSGVDKRSYSSKHLPNWLEKVGLWAEQETEDYQLPK 224

Query: 76  QKFTPQKNII---TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           +    +++++   T++       L   +    ++ + +RD      + +   +       
Sbjct: 225 ELEKFRQSVLLEKTKKGAAPQHTLFSAIDSIFEQPLTLRDLILARAISEIRFSV------ 278

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                ++ K++   L F+DL+   +  L++      +   I       +IDE QDT   Q
Sbjct: 279 -----QQEKRQRAELGFDDLLSKLDAALQQSG-GELLAQSIRTRYPVAMIDEFQDTDPQQ 332

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +  ++                L  +GD KQ+IY+F GA+    +R +       T   
Sbjct: 333 YRIFHTVYGG--------QEACALLLIGDPKQAIYAFRGADIFTYIRARSEVSAHYT--- 381

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                  L  ++RS+  ++  V+++FS+         +    I   +++     + ++  
Sbjct: 382 -------LETNWRSSFPMVQSVNRLFSLVNTPFLF--EQIPFINVAAAKKNHDLSFEI-- 430

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD-----TIFSNGK 367
                   +  P    W    D +       ++AR+ A  I + +         + +   
Sbjct: 431 ------KGEKQPALHFWLQPGDGVGVSEYQQVMARQCAAQIRDWLTAGQQGQAELLTTKG 484

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
            + +QA DI +LVR R +  LI      L      SV  ++R  + +    KDL+  
Sbjct: 485 PKPVQASDITILVRSRAEAALIRDALSAL---AIPSVYLSNRDSVFETTEAKDLLWF 538


>gi|258545084|ref|ZP_05705318.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826]
 gi|258519661|gb|EEV88520.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826]
          Length = 1287

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 100/758 (13%), Positives = 201/758 (26%), Gaps = 80/758 (10%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSL----SMETGNPTILKKAQTLQQASQTQCIEERF 66
           + ++ + + L  L    ++D    +      +    N    K+   L Q  Q    E  F
Sbjct: 249 DRHQALTRQLRELDAAVIADWQAMIDAPEFAAAVAKNAAWYKQRDALPQLLQQLHQELPF 308

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           +  +    +    P+ +     +                + +  RD    +         
Sbjct: 309 NDRTEALASGFGKPRISSKQTALTAAFTAHP--FTLLIRDLLAARDARQNHLDHHKRQTI 366

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
            +L + +   Y +A +      F +     N+ L        + + + +    +L+DE Q
Sbjct: 367 ASLLETVRQTYPQALEARGETTFSEKTARINEALAHPQHGTNLAHYLTRRYPVMLVDESQ 426

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D +  Q  ++          ++       L  VGD KQ+IY F G +     R K   + 
Sbjct: 427 DLNDEQAALLERTYLR----EDGERKHGFLLLVGDPKQAIYGFRGGDVANYNRLKTRFR- 481

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                        L  + RS+ +++  +++ +   +NA+      T    H +       
Sbjct: 482 -------PDEQHRLDTNRRSSPNLIAALNEHYLQDDNAR----LGTDITYHEAQAANPAQ 530

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
           T+          D     +   WT    +   E+        IA  ++ +          
Sbjct: 531 TI-------LAADGSPIARPMQWTHSGTNQDSETDT------IAALVARLTDG------- 570

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               I  +DI +L+R            +   +   I    +    +      +    L  
Sbjct: 571 --TGIAPRDIQILMRSNSSL----ETLQNKLHAQHIDSERSHDRSVFTGAVARTFADLLA 624

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            +   E       +L    + +S+ D+ ++     + E      +               
Sbjct: 625 ALEQPEHRDRQNRLLSGLYYGYSQQDLDRL-AAIEQGEIPARADELTLAELREALTQAHD 683

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN----FTLRNEQN 542
                  +A            +                  D L   L+     T+  E  
Sbjct: 684 AWQSWGLLAALNPLLTHEKHNIWQTLA--------SCPAPDNLRHLLDLRHIQTILAEHA 735

Query: 543 SYSSLQELISELEQ------YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                 +  +               K       N V ++T+H AKGLE+PVV L    + 
Sbjct: 736 PKQRPAQFGAWWRAQLAAPPDADWAKAPPLPGQNAVHLLTIHKAKGLEAPVVILA---TG 792

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                            D   I I + +  +           + +   EE  RLLYVG+T
Sbjct: 793 SNHKGGGANPVPTWRYRDGDTIRISLAKPANTP---------IDQQENEEQRRLLYVGLT 843

Query: 657 RASDQLIICK-HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           RA + L++            +     Y     +        +                  
Sbjct: 844 RAKNLLLVAHRECKPDKANPTPTEKLYLTYAQNPGRCPHAGETSAEALAALPYRAHPSHE 903

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                  P                         +    
Sbjct: 904 PPANPPPPQSGGGEGGNGGSACDFTAYAHEKPLSLWER 941


>gi|227501205|ref|ZP_03931254.1| ATP-dependent DNA helicase [Anaerococcus tetradius ATCC 35098]
 gi|227216606|gb|EEI82010.1| ATP-dependent DNA helicase [Anaerococcus tetradius ATCC 35098]
          Length = 851

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 121/857 (14%), Positives = 247/857 (28%), Gaps = 199/857 (23%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
             +   + +  +   ++ + + +  N+            L+  +   YE    K  +++F
Sbjct: 139 KDEVATILDIFQTIINQVLDLDELKNSENPKDR------LSYEIYLTYENLLNKLGLINF 192

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           + ++    DLLK       I  KI + I+ ++IDE QDT+LIQ E+  +LT+        
Sbjct: 193 QLILKRFLDLLKDP----LIGEKIRKSIDLVIIDEYQDTNLIQEEIAFALTD-------- 240

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 +   GD+ Q++YSF GA+ K +                K     L +++RS   
Sbjct: 241 ---SNNIIVFGDDDQALYSFRGADAKNLTHFDEKF---YQRRKVKVEKYFLDINYRSNQV 294

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+    K     + A      S                               N    + 
Sbjct: 295 IIDKARKFMEEAKGASRKELRSV------------------------DEKENPNTIVRAR 330

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               D+L                I  ++           + I+   I  L          
Sbjct: 331 ADEMDNL--------------VKIVKLLS----------KKIKLNQIAFLFPS--FANPY 364

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                   +   I V+            I+  + +   I + +       +       F 
Sbjct: 365 PQALEEKFSKENIRVINRKSDKFFHREEIRFFVHVLMKIANFD------RINVDFDERFM 418

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
             +  +  T R   + + E     ++  I+ F   ++   +L  I        FF  ILG
Sbjct: 419 SYEERQKNTYRKYLKKILEDDSFISSKEINDFLLTLEDGQDLSAIIYKLMGLTFFKEILG 478

Query: 510 AKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQE--------LISELEQYPPT 560
                   +     + I     +F+N  +  ++    +           L    ++   +
Sbjct: 479 GA------VDELDRQRIFKNTGKFINLCVDFDEIYPKTKASGAKFVRNFLYVYFKKNAIS 532

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                 +  + +  MT+H +KGLE  VVF+                              
Sbjct: 533 EFDEDDSYEDAINFMTIHQSKGLEFDVVFVSSLND------------------------- 567

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
             P+      I + L     +    ++ R  Y   TRA + L++               +
Sbjct: 568 -YPRKDYPKYIDTYLASDSLEKKNLDFYRKYYTAFTRAKNLLVVL------------DNS 614

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
               + +   + +    +   +         ++ +    E   L     I   +      
Sbjct: 615 RDFRIKNFALSLDDSSILASID---------FKMAKKAREKKILAYTTDIAVYLTCPLKY 665

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
           K +          P ++                         G  +H+L Q +    ++ 
Sbjct: 666 KFVRKLSYRQKKTPSLI------------------------FGSKVHELAQYM--YSDNF 699

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV-SVSGKINCPK 859
            K  +T +  +N               I  LL               EV S        +
Sbjct: 700 DKKAMTDFLKENESFIIP---------IRNLLNTAF-----------EVRSSEVNYKADR 739

Query: 860 KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
              I+ G ID I   Q    + + KT       ++     +  Q+  Y K++K     + 
Sbjct: 740 NFYILQGNIDVILKDQS---LMDLKTGSFNENSLD----KYKKQVITYNKLMK--LNGEE 790

Query: 920 LV-CLLIYVSEPKVFII 935
           +    L ++ + ++  +
Sbjct: 791 VKDMYLYFIEKDELIKV 807


>gi|169834543|ref|YP_001693368.1| DNA helicase II [Clostridium botulinum B1 str. Okra]
 gi|169123091|gb|ACA46926.1| UvrD/REP helicase [Clostridium botulinum B1 str. Okra]
          Length = 697

 Score =  151 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 83/541 (15%), Positives = 194/541 (35%), Gaps = 116/541 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + ++Y + +K    +DF+D++I  N+LL        I      +  ++ IDE QD S +
Sbjct: 189 DIYSNYYKTQKTYNYIDFDDMLIIANNLLAANKEIKSI---YVNKFEYMQIDEAQDCSPL 245

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  L          +     L   GD+ Q+IY F G++PK +L   +  +      
Sbjct: 246 QYKIIEKL----------NKDKYNLAFFGDDDQTIYEFQGSDPKLLLNLPKQYKN----- 290

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I +  +FRS  +++   +   +  +        ++             G+++L 
Sbjct: 291 ---TQVIYMDQNFRSYKNLVKYNEIFINKNKERFNKKMIASN---------DAEGSIELR 338

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +  ++   ++                                             
Sbjct: 339 SFTDFESSNKTIFEKLI-----------------------------------------PN 357

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILS 430
              +I +L R       +         ++ I +    +F  L+ +  IKD++ +  F  +
Sbjct: 358 LNGNIGILYRNNMSAIPMINY----CINHNIHINIKAKFPSLSTNKIIKDILRIYYFSQN 413

Query: 431 QED-DLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEYIQKFA---NCGISKFQH 483
             + +L    + K      S+  + K+C Q +E      +++Y++++    +      + 
Sbjct: 414 MNNAELYLQIVYKIKPIYISKSMLNKVCKQYNEFSNDLNIFDYMRRYHSSLDMPEYMLEK 473

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +     +   +A+  +P    + +    + ++   +   ++        +   ++    +
Sbjct: 474 INDICFDFEQLAKHTNPAKIISFVFNILEYKEYLNNDKKSDSQ------IVDIIKYIAKT 527

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            +++ E I  +++    I + +  + N + + T+H++KGLE   V + D  + +F   + 
Sbjct: 528 TNTINEFIIRIKEIDNVILQENDEDAN-ITLNTIHSSKGLEWSNVIITDINNNIFDTFNK 586

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           +K   +P+                                 E   RLLYVG TRA   L 
Sbjct: 587 QKEEKIPT--------------------------EAVNEMIESTRRLLYVGCTRAKANLY 620

Query: 664 I 664
           I
Sbjct: 621 I 621


>gi|229587577|ref|YP_002860615.1| putative DNA helicase II [Clostridium botulinum Ba4 str. 657]
 gi|229260101|gb|ACQ51138.1| putative DNA helicase II [Clostridium botulinum Ba4 str. 657]
          Length = 621

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 84/541 (15%), Positives = 194/541 (35%), Gaps = 116/541 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +  +Y + +K    +DF+D++I  N+LL        I+     +  ++ IDE QD S +
Sbjct: 113 DIYNNYYKTQKTYNYIDFDDMLIIANNLLAAN---KEIQSIYVNKFEYMQIDEAQDCSPL 169

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  L          +     L   GD+ Q+IY F G++PK +L   +  +      
Sbjct: 170 QYKIIEKL----------NKDKYNLAFFGDDDQTIYEFQGSDPKLLLNLPKQYKN----- 214

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I +  +FRS  +++   +   +  +        ++             G+++L 
Sbjct: 215 ---TQVIYMDKNFRSYKNLVKYNEIFINKNKERFNKKMIASN---------DAEGSIELR 262

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +  ++   ++                                             
Sbjct: 263 SFTDFESSNKTIFEKLI-----------------------------------------PN 281

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILS 430
              +I +L R       +         ++ I +    +F  L+ +  IKD++ +  F  +
Sbjct: 282 LNGNIGILYRNNMSAIPMINY----CINHNIHINIKAKFPSLSTNKIIKDILRIYYFSQN 337

Query: 431 QED-DLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEYIQKFA---NCGISKFQH 483
             + +L    + K      S+  + K+C Q +E      +++Y++++    +      + 
Sbjct: 338 MNNAELYLQIVYKIKPIYISKSMLNKVCKQYNEFSNDLNIFDYMRRYHSSLDIPEYMLEK 397

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +     +   +A+  +P    + I    + ++   +   ++        +   ++    +
Sbjct: 398 INDICFDFEQLAKHTNPAKIISFIFNILEYKEYLNNDKKSDSQ------IVDIIKYIAKT 451

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            +++ E I  +++    I + +  + N + + T+H++KGLE   V + D  + +F   + 
Sbjct: 452 TNTINEFIIRIKEIDNVILQENDEDAN-ITLNTIHSSKGLEWSNVIITDINNNIFDTFNK 510

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           +K   +P+                                 E   RLLYVG TRA   L 
Sbjct: 511 QKEEKIPT--------------------------EAVNEMIESTRRLLYVGCTRAKANLY 544

Query: 664 I 664
           I
Sbjct: 545 I 545


>gi|330859831|emb|CBX70163.1| hypothetical protein YEW_DC12990 [Yersinia enterocolitica W22703]
          Length = 311

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 107/284 (37%), Gaps = 38/284 (13%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +          +   I  + +L +E        KA  ++        +++  
Sbjct: 59  AAREMKERV-AQTLGRKEARGLMIATFHTLGLEIIKKEY--KALGMKSNFSLFDAQDQLG 115

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL            K++  + +      L++ + +  +    + D      + +S     
Sbjct: 116 LL------------KDLTHKWLEDDKTLLQQLISQISNWKNDLLDPAAAAALARSERD-- 161

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L  +    Y+   K   VLDF+DLI     LL+       +R +    + ++L+DE QD
Sbjct: 162 KLFVHCYGLYDAHLKACNVLDFDDLISLPTLLLQND---LEVRERWQNRLRYLLVDEYQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+++++ L            S      VGD+ QSIYS+ GA P+ ++       + 
Sbjct: 219 TNTSQYQMVKLLVG----------SRARFTVVGDDDQSIYSWRGARPQNLVLLNEDFPQ- 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
                    +I+L  ++RS+  IL   + + +   +    +   
Sbjct: 268 -------LQVIKLEQNYRSSGRILKAANILIANNSHVFEKNSFP 304


>gi|289568567|ref|ZP_06448794.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis T17]
 gi|289542321|gb|EFD45969.1| exonuclease subunit V beta recB [Mycobacterium tuberculosis T17]
          Length = 906

 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 93/607 (15%), Positives = 171/607 (28%), Gaps = 68/607 (11%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
              E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 83  PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 142

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
            L             +       ++  D +    ++    + + D    +         +
Sbjct: 143 ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 202

Query: 124 LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 203 KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 260

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 261 VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 308

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                    AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 309 --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           +            +            +     ++L +     + A               
Sbjct: 361 LASAPRP--APFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 410

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 411 SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 466

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           + L     + +          +  F  + + +        +                   
Sbjct: 467 LCLLEAFDAPQRSGLVRAAACTMFFGETAESLAAEGDALTD------------------- 507

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
             V   + E    A+       F     A  GR+    R G   +  L            
Sbjct: 508 -RVAGTLREWADHARHRGVAAVFQAAQLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAH 566

Query: 542 NSYSSLQELISELEQYP------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                L  L   L +        P   R   ++   V+IMTV  AKGL+ P+V+L    +
Sbjct: 567 RERLGLPGLRDWLRRQAKAGAGPPEHNRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFN 626

Query: 596 QVFSHKH 602
           +      
Sbjct: 627 RNVRSDD 633


>gi|213965863|ref|ZP_03394054.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
 gi|213951441|gb|EEB62832.1| ATP-dependent DNA helicase [Corynebacterium amycolatum SK46]
          Length = 710

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 92/773 (11%), Positives = 193/773 (24%), Gaps = 193/773 (24%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
             ++         +D              + S ++             L+        + 
Sbjct: 58  LAVTFTSRAAGEMRDRLAKMGTPGVQARTFHSAALR-----------QLRYFWPQVAGDM 106

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
            + LL            + +      +   D+  +++ ++             +    T 
Sbjct: 107 PWQLLDDKKFRVVAQAVRRVGLDTSKETIRDVMGEIEWAKATLAGADQYQAALREHGRTA 166

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDL---------------IINTNDLLKKRDVSAWI 169
                A+ +   Y           +ED+               I     +    + S  +
Sbjct: 167 PLS--AEKIIDCYRA---------YEDIKTTPDGLLLDFDDLLIHTAGAM----ENSRAV 211

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             +   +    ++DE QD + +Q  V+ +   D             L  VGD  Q+IYSF
Sbjct: 212 AEEFRNQYRCFVVDEYQDVTPLQQRVLNAWLGD----------RDNLTVVGDANQTIYSF 261

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA P+ ++   R           + +++ L   +RST  ++ + + V    +       
Sbjct: 262 TGATPQYLMNFSRDYP--------EATVVRLQRDYRSTPQVVELANNVIGRAQGR----- 308

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            + + ++    R                                    Q     + AR  
Sbjct: 309 IAGSRLKLIGQRQDGPEPT---------------------------FNQYDDEPMEARAT 341

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A +I  +I   T           A +I VL R    + +       +     ++      
Sbjct: 342 ARSIKRLIDAGTP----------ASEIAVLYRINAQSAVFEQALSEV----GVAYQVRGG 387

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
                   I+D +A              V + +S     +   +          +     
Sbjct: 388 DGFYQRPEIRDAIAAL------------VRVSRSSR---TVPTLQGTNLLDLVKQVFAGL 432

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                    +  +   + +  L          D    I+ A                  +
Sbjct: 433 GMTDQEPEGAGARERWQSLRAL---------FDLCKDIVHANT-------------EVNI 470

Query: 530 DEFLNFTL-RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
              L     R +     +L                      + V + ++H AKGLE   V
Sbjct: 471 QALLGQLHTRQQAKHPPTL----------------------DGVTLASLHAAKGLEWDAV 508

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FLV         +H                                          EE  
Sbjct: 509 FLVGLTDGSLPIQHALNKFDRSPAQG--------------------------AEAIEEER 542

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           RL YVG+TRA + L +    + +   + ++R    +        +       ++  +   
Sbjct: 543 RLFYVGITRAREHLELSWSLSRTEGGRRSRRRTRFLDELDIDVSDYSAAAHRSSRSSSSR 602

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
               +         PL      +++    +       P   +    + L  S 
Sbjct: 603 SKRQQSKQCKGCTKPLH--TDAERISGRCEECPVSADPALLEALRAWRLEMSR 653


>gi|169834893|ref|YP_001715691.1| DNA helicase II [Clostridium botulinum A3 str. Loch Maree]
 gi|169409000|gb|ACA57410.1| UvrD/REP helicase [Clostridium botulinum A3 str. Loch Maree]
          Length = 697

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 83/541 (15%), Positives = 194/541 (35%), Gaps = 116/541 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + ++Y + +K    +DF+D++I  N+LL        I      +  ++ IDE QD S +
Sbjct: 189 DIYSNYYKTQKTYNYIDFDDMLIIANNLLAANKEIKSI---YVNKFEYMQIDEAQDCSPL 245

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  L          +     L   GD+ Q+IY F G++PK +L   +  +      
Sbjct: 246 QYKIIEKL----------NKDKYNLAFFGDDDQTIYEFQGSDPKLLLNLPKQYKN----- 290

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                +I +  +FRS  +++   +   +  +        ++             G+++L 
Sbjct: 291 ---TQVIYMDQNFRSYKNLVKYNEIFINKNKERFNKKMIASN---------DAEGSIELR 338

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +  ++   ++                                             
Sbjct: 339 SFTDFESANKTIFEKLI-----------------------------------------PN 357

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFILS 430
              +I +L R       +         ++ I +    +F  L+ +  IKD++ +  F  +
Sbjct: 358 LNGNIGILYRNNMSAIPMINY----CINHNIHINIKAKFPSLSTNKIIKDILRIYYFSQN 413

Query: 431 QED-DLSFVCMLKSPLFNFSEDDIFKICTQRHE---TETVYEYIQKFA---NCGISKFQH 483
             + +L    + K      S+  + K+C Q +E      +++Y++++    +      + 
Sbjct: 414 MNNAELYLQIVYKIKPIYISKSMLNKVCKQYNEFSNDLNIFDYMRRYHSSLDIPEYMLEK 473

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           +     +   +A+  +P    + +    + ++   +   ++        +   ++    +
Sbjct: 474 INDICFDFEQLAKHTNPAKIISFVFNILEYKEYLNNDKKSDSQ------IVDIIKYIAKT 527

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            +++ E I  +++    I + +  + N + + T+H++KGLE   V + D  + +F   + 
Sbjct: 528 TNTINEFIIRIKEIDNVILQENDEDAN-ITLNTIHSSKGLEWSNVIITDINNNIFDTFNK 586

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           +K   +P+                                 E   RLLYVG TRA   L 
Sbjct: 587 QKEEKIPT--------------------------EAVNEMIESTRRLLYVGCTRAKANLY 620

Query: 664 I 664
           I
Sbjct: 621 I 621


>gi|167627899|ref|YP_001678399.1| DNA/RNA helicase superfamily I protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597900|gb|ABZ87898.1| DNA and RNA helicase superfamily I protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 686

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 91/660 (13%), Positives = 187/660 (28%), Gaps = 145/660 (21%)

Query: 32  NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEIN- 90
           N ++      G     K    L++      I +   L    F           IT++I+ 
Sbjct: 89  NSFLQAFARAGFVKADKI---LKEYEIDAIISKLLKLYQKEF----------KITKDIDN 135

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
           ++    KE +   + +      + N     +       L   +   + +  +    + ++
Sbjct: 136 ERVETFKEYISLLKSDLSLTNKKLNELNTKEK-----KLLDKVFLEFSKECEHQKAITYD 190

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           D+I     L +K   S      +    +HI+IDE QD +  Q   ++ L           
Sbjct: 191 DMIYLPAKLFEKDKNSIAQASSL---YSHIIIDEYQDINQAQQFFLKCLVGQNTY----- 242

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                + AVGD  Q+IY + G+ P  +L   K+  +              L  +FR    
Sbjct: 243 -----VMAVGDVDQTIYQWRGSTPYYMLEGFKKDFKN--------VKQYSLSYTFRYGDL 289

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           +  + + + +  +        +   +   +                              
Sbjct: 290 VSLMANNIITNNKKRHDNLCITYPKLNKTT------------------------------ 319

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                    + S    + ++   +  +I +           ++A DI +LVRK   T + 
Sbjct: 320 ---------DISILDSSDKVVLKLKALIDSG----------VKASDIAILVRKYNSTTVF 360

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM--------- 440
                     + ++        +      K +      + ++    +   +         
Sbjct: 361 ELS----CLYHDLAYSVVADKNIFSENLFKAIYGYL-MLFNKGRGFAKHSIDQRIEFIKA 415

Query: 441 -LKSPLFNFSEDDIFKICTQRHETETVYE---YIQKFANCGISKFQHVIKYIHELIHIAQ 496
            L  P     +D    +  +  +  +                 K ++++        I  
Sbjct: 416 MLDYPSLYLKKDVKQNLANKIAQDISASMNIISELTKTVDKPFKEKNILAVSASWRAIFN 475

Query: 497 FCSP---HDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
                      + IL      +Q     G         + ++      +   SSL E I 
Sbjct: 476 NTRIKKSERAISFILETLDLEKQISKVSGETHSSKSKLQIIDGMSSFAKGKKSSLSEFIE 535

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            L +      +    + N+++IM++H AKGLE   V + D     F              
Sbjct: 536 LLYELYIKSNQQGENDPNQIQIMSMHRAKGLEWDYVVVHDATEGGF-------------- 581

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                +        T EE  RL YV +TR    L I    + + 
Sbjct: 582 -------------------FGEKNSKACDETIEEERRLFYVAITRVKKHLFIVSSDDINR 622


>gi|291517284|emb|CBK70900.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Bifidobacterium
           longum subsp. longum F8]
          Length = 1343

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/593 (14%), Positives = 175/593 (29%), Gaps = 101/593 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + K +    +     + E +  R  ++   + ++T     +   L   Y +AK++  +
Sbjct: 215 KRLKKDTDASWQAKLDDRAEHLHARCTYHCGALLETTRK-RDILLQLVEAYAQAKRERNM 273

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +F D  I    L+++      I  +  +  +H+L+DE QDTS  Q  ++ +L       
Sbjct: 274 AEFSDFTIAAYQLIERFPS---IGERTRRRYSHVLLDEYQDTSTTQAALLAALFHVDASQ 330

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           ++  +      AVGD  QSIY++ GA P      ++       +    +    L ++ R+
Sbjct: 331 RSAVN------AVGDPFQSIYAWRGASPGAFRMFQQDF-----HLSAGYKPFPLSVTRRN 379

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           +  +L   + +                             +  L  +V            
Sbjct: 380 SRIVLEAANNL------------------TLPLRSNPSRPSSSLMREVDVSSLDPMPDAP 421

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           E                 + R     I+            +    Q   + VL R +   
Sbjct: 422 EGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQE--QMPGEQKAPVAVLFRSKSHM 479

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
           P      +       ++        L +   I+DLMAL        D  S + +L +P F
Sbjct: 480 PEY----QAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRF 535

Query: 447 NFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS- 499
             S  D+  +     E       + + +      +   +++  V++   + +  A F   
Sbjct: 536 TMSAADLTMLARFAEEQNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPD 595

Query: 500 ------PHDFFTLI--------------------------------------LGAKKGRQ 515
                        +                                      L       
Sbjct: 596 VLLRGDLVKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLA 655

Query: 516 QFISRFGNEVIDVL-----DEFLNFTLRNEQ----NSYSSLQELISELEQYP--PTIKRA 564
             +    +     L     D  ++      Q        SL   I+ ++          +
Sbjct: 656 GVLHNPQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAAS 715

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                 +V +MTVH +KGLE   V +V   +  F       + I+   +   G
Sbjct: 716 LPDAPVDVELMTVHQSKGLEWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGG 768



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 23/143 (16%)

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ- 875
                   L+    RL E+       +   ++E ++   +       +++G++D + I   
Sbjct: 1197 DNATESKLVAWQRRLAESSWAKRIPA---WTERAIVVDVPGVG---LVNGKLDAVFIGGL 1250

Query: 876  ------QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYV 927
                      + ++KT     +  +      +AQL +Y  +L         S+   L YV
Sbjct: 1251 DPSSTTARFTVVDWKTGRRPTKPDDITRK--LAQLDMYRLLLAAVEGVELDSIDATLYYV 1308

Query: 928  SEPKVFIIPQNKLNKAFAEISTK 950
            SE      P   L +  A   TK
Sbjct: 1309 SE------PDEGLRELHARAKTK 1325


>gi|289640603|ref|ZP_06472775.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
 gi|289509492|gb|EFD30419.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata]
          Length = 750

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 93/768 (12%), Positives = 205/768 (26%), Gaps = 143/768 (18%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQ--ASQTQCIEERFSLLSSFFLTQKFTPQKN 83
               ++   +      G       A  L+Q      +        L    +         
Sbjct: 85  RAAGELRGRLRTLGADGVQARTFHAAALRQLGYFWPRIAGAALPRLVESKIALVGRAASR 144

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS-TLASLTLAKYLNAHYEEAKK 142
                   +  DL  +++ ++   +               T     +   L   YE+AK+
Sbjct: 145 ARLAPSRTELRDLTAEIEWAKATLLTPEQYPAAATAAGRETTHPPEVIARLYTAYEQAKR 204

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  VLDF+DL++ T  ++++     W+  ++     H ++DE QD + +Q  ++ +   +
Sbjct: 205 EAGVLDFDDLLLLTAAVIEEHG---WVAEELRSRYRHFVVDEYQDVNPLQQRLLDAWLGE 261

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +  VGD  Q+IYSF GA P+ +L   R           +  ++ +  
Sbjct: 262 RDS----------ICVVGDANQTIYSFTGASPRYLLDFPRRFP--------EAHVVRIVR 303

Query: 263 SFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +RST  ++ + +++ +    A  +G    S+      +  +          +       
Sbjct: 304 DYRSTPQVVGLANRLVARVGTAGTRGTPGGSSAPGAQGTHGVAGAVLAAARHEPPRLVAQ 363

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           + +    ++T +     + ++ +   R        ++G            + A +I VL 
Sbjct: 364 RPDGPAPTFTEFDSEPEEAAATARRIRA-------LLGAG----------VPASEIAVLY 406

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R    +               I  +        +   + + + L R      D    V +
Sbjct: 407 RVNAQSEAYETAIAA----AGIPYLVRGGERFFERPEVAEAVQLLRAAARSADTDRPVGL 462

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           +          ++ ++                           +++    L+      + 
Sbjct: 463 VA---------EVTEVFAALGWRGGDPPNGSGAQRERWENLAALVRLAEALVAADPGATL 513

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
             F   +                                                     
Sbjct: 514 DHFVADLADR-------------------------------------------------- 523

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
               H      V + ++H AKGLE   VFLV                             
Sbjct: 524 AVHQHIPTVEGVTLASLHAAKGLEWDAVFLVGLAEGTLP--------------------- 562

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                         +I     +  EE  RLLYVG+TRA ++L +          + ++R 
Sbjct: 563 --------------IIHAQTPAQIEEERRLLYVGVTRARERLALSWALARHEGGRRSRRP 608

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
              +   +  +     +     +    +      S           E  +          
Sbjct: 609 SRFLDGLAPRSASSAGRPAGGPAHPGVDGAGALRSRGRAAVRCRVCERPLVGQAARAGRC 668

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
                P   D      L         + +  + +         +  H+
Sbjct: 669 DG--CPANIDQALFERLRAWRSARAREQSAPAFVVFTDATLMAIAEHR 714


>gi|254479195|ref|ZP_05092542.1| hypothetical protein CDSM653_566 [Carboxydibrachium pacificum DSM
           12653]
 gi|214034858|gb|EEB75585.1| hypothetical protein CDSM653_566 [Carboxydibrachium pacificum DSM
           12653]
          Length = 340

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 101/296 (34%), Gaps = 42/296 (14%)

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-QR 460
           +           D   IKD++A  R I++  DD+SF  ++  P        I  +    R
Sbjct: 5   VPYKVVGALRFYDRKEIKDILAYLRLIVNPYDDISFKRIVNVPRRGIGPATIEALEKVAR 64

Query: 461 HETETVYEYIQKFAN-CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
            +  +++  I+   N           ++I +LI      S  D    IL      ++   
Sbjct: 65  EKDTSLFFAIEDLKNARNKGSLLQFKQFILDLIDKKDAMSVSDLIKYILEQTGYIEELKR 124

Query: 520 RFGNEVI---DVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               E     + L+EFLN     E+ +   SL+  ++ +                 V +M
Sbjct: 125 EESEEAEGRIENLNEFLNAAYEFEESSEDKSLEAFLAGITLVSDIDMAGDI--GESVVLM 182

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H+AKGLE PVVF+V     +F                                     
Sbjct: 183 TLHSAKGLEFPVVFMVGMEEGLFPSYSSF------------------------------- 211

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                    EE  RL YVG+TR+ ++L +      +   +S   ++   + +    
Sbjct: 212 ---EDDHELEEERRLCYVGITRSKERLYLTYARQRNLYGRSQYNSYSRFISEIPER 264


>gi|46191135|ref|ZP_00206689.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium
           longum DJO10A]
 gi|189439817|ref|YP_001954898.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|189428252|gb|ACD98400.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
          Length = 1343

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/593 (14%), Positives = 175/593 (29%), Gaps = 101/593 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + K +    +     + E +  R  ++   + ++T     +   L   Y +AK++  +
Sbjct: 215 KRLKKDTDASWQAKLDDRAEHLHARCTYHCGALLETTRK-RDILLQLVEAYAQAKRERNM 273

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +F D  I    L+++      I  +  +  +H+L+DE QDTS  Q  ++ +L       
Sbjct: 274 AEFSDFTIAAYQLIERFPS---IGERTRRRYSHVLLDEYQDTSTTQAALLAALFHVDASQ 330

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           ++  +      AVGD  QSIY++ GA P      ++       +    +    L ++ R+
Sbjct: 331 RSAVN------AVGDPFQSIYAWRGASPGAFRMFQQDF-----HLSAGYKPFPLSVTRRN 379

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           +  +L   + +                             +  L  +V            
Sbjct: 380 SRIVLEAANNL------------------TLPLRSNPSRPSSSLMREVDVSSLDPMPDAP 421

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           E                 + R     I+            +    Q   + VL R +   
Sbjct: 422 EGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQE--QMPGEQKAPVAVLFRSKSHM 479

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
           P      +       ++        L +   I+DLMAL        D  S + +L +P F
Sbjct: 480 PEY----QAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRF 535

Query: 447 NFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS- 499
             S  D+  +     E       + + +      +   +++  V++   + +  A F   
Sbjct: 536 TMSAADLTMLARFAEEQNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPD 595

Query: 500 ------PHDFFTLI--------------------------------------LGAKKGRQ 515
                        +                                      L       
Sbjct: 596 VLLRGDLVKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLA 655

Query: 516 QFISRFGNEVIDVL-----DEFLNFTLRNEQ----NSYSSLQELISELEQYP--PTIKRA 564
             +    +     L     D  ++      Q        SL   I+ ++          +
Sbjct: 656 GVLHNPQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAAS 715

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                 +V +MTVH +KGLE   V +V   +  F       + I+   +   G
Sbjct: 716 LPDAPVDVELMTVHQSKGLEWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGG 768



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 23/143 (16%)

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ- 875
                   L+    RL E+       +   ++E ++   +       +++G++D + I   
Sbjct: 1197 DNATESKLVAWQRRLAESSWAKRIPA---WTERAIVVDVPGVG---LVNGKLDAVFIGGL 1250

Query: 876  ------QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYV 927
                      + ++KT     +  +      +AQL +Y  +L         S+   L YV
Sbjct: 1251 DPSSTTARFTVVDWKTGRRPTKPDDITRK--LAQLDMYRLLLAAVEGVELDSIDATLYYV 1308

Query: 928  SEPKVFIIPQNKLNKAFAEISTK 950
            SE      P   L +  A   TK
Sbjct: 1309 SE------PDEGLRELHARAKTK 1325


>gi|240142186|ref|YP_002966696.1| putative DNA-dependent ATPase I and helicase II [Methylobacterium
           extorquens AM1]
 gi|240012130|gb|ACS43355.1| putative DNA-dependent ATPase I and helicase II [Methylobacterium
           extorquens AM1]
          Length = 597

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/616 (14%), Positives = 165/616 (26%), Gaps = 152/616 (24%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           +  DL + + + +D  +   +   + +  +     L  A  +   YE    +  V DF  
Sbjct: 130 EYSDLVDMISRWKDRLVSPVEA--SAEAARRQTPDLVQAAEIYGAYERELAERGVCDFPR 187

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           LII T    K  +    +R  + +   H+L+DE QDT+ +Q  ++ +L            
Sbjct: 188 LIIATVRAAKADEA---VRSFLQRRFRHVLVDEFQDTNRLQIALLEALVGQ--------- 235

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               L+ VGD+ Q++Y + GA+ +      R  +          +   L  ++RST  ++
Sbjct: 236 -GGNLWVVGDDDQALYGWRGADVRYATDFGRRFR--------GGARYVLSRNYRSTPAVV 286

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              + V ++                           V++ +  V   +++          
Sbjct: 287 AAANAVITVNT-------------------------VRVDKTTVPMVEAEEGDGVHIAGF 321

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
             D     + A  +ARR+                     ++ +D+ VL R       +  
Sbjct: 322 GDDREEAAAVAKAVARRLRG------------------GVRPRDVAVLFRSGS----LAP 359

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
           + +      KI V  +          ++  +A+ R             + K P       
Sbjct: 360 VVQAALAREKIPVRLSGIGSFWSLPEVRLFVAVLRAASGSASAEDREALEKHPRR----- 414

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                                                 ++                  A 
Sbjct: 415 -------------------------------------RQISAFLHTMKGAPIAAAAEPAS 437

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
                 +          L          E     S       +     T           
Sbjct: 438 NLVANLVPEGLAPDRTGLWIEAAQQAAIEAAECGSYARFFEHVGISSGTSTAGDDEE--A 495

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + T+H AKGLE P VF+V     +  H                               
Sbjct: 496 VVLSTIHAAKGLEWPTVFVVGAELAMLPH------------------------------- 524

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                   K +  EE  RLLYV +TRA  Q  +          +      ++M       
Sbjct: 525 -------HKSTDVEEERRLLYVAVTRAMRQCFVSYADERFARAQFASPFLFEMADRCGSA 577

Query: 692 DERVKKIKLTNSINKD 707
                + +        
Sbjct: 578 HPIGWRNRPVRPTPLP 593


>gi|322688621|ref|YP_004208355.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F]
 gi|320459957|dbj|BAJ70577.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F]
          Length = 1343

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/593 (14%), Positives = 175/593 (29%), Gaps = 101/593 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + K +    +     + E +  R  ++   + ++T     +   L   Y +AK++  +
Sbjct: 215 KRLKKDTDASWQAKLDDRAEHLHARCTYHCGALLETTRK-RDILLQLVEAYAQAKRERNM 273

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +F D  I    L+++      I  +  +  +H+L+DE QDTS  Q  ++ +L       
Sbjct: 274 AEFSDFTIAAYQLIERFPS---IGERTRRRYSHVLLDEYQDTSTTQAALLAALFHVDASQ 330

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           ++  +      AVGD  QSIY++ GA P      ++       +    +    L ++ R+
Sbjct: 331 RSAVN------AVGDPFQSIYAWRGASPGAFRMFQQDF-----HLSAGYKPFPLSVTRRN 379

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           +  +L   + +                             +  L  +V            
Sbjct: 380 SRIVLEAANNL------------------TLPLRSNPSRPSSSLMREVDVSSLDPMPDAP 421

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           E                 + R     I+            +    Q   + VL R +   
Sbjct: 422 EGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQE--QMPGEQKAPVAVLFRSKSHM 479

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
           P      +       ++        L +   I+DLMAL        D  S + +L +P F
Sbjct: 480 PEY----QAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRF 535

Query: 447 NFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS- 499
             S  D+  +     E       + + +      +   +++  V++   + +  A F   
Sbjct: 536 TMSAADLTMLARFAEEQNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPD 595

Query: 500 ------PHDFFTLI--------------------------------------LGAKKGRQ 515
                        +                                      L       
Sbjct: 596 VLLRGDLVKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLA 655

Query: 516 QFISRFGNEVIDVL-----DEFLNFTLRNEQ----NSYSSLQELISELEQYP--PTIKRA 564
             +    +     L     D  ++      Q        SL   I+ ++          +
Sbjct: 656 GVLHNPQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAAS 715

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                 +V +MTVH +KGLE   V +V   +  F       + I+   +   G
Sbjct: 716 LPDAPVDVELMTVHQSKGLEWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGG 768



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 23/143 (16%)

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ- 875
                   L+    RL E+       +   ++E ++   +       +++G++D + I   
Sbjct: 1197 DNATESKLVAWQRRLAESSWAKRIPA---WTERAIVVDVPGVG---LVNGKLDAVFIGGL 1250

Query: 876  ------QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYV 927
                      + ++KT     +  +      +AQL +Y  +L         S+   L YV
Sbjct: 1251 DPSSTTARFTVVDWKTGRRPTKPDDITRK--LAQLDMYRLLLAAVEGVELDSIDATLYYV 1308

Query: 928  SEPKVFIIPQNKLNKAFAEISTK 950
            SE      P   L +  A   TK
Sbjct: 1309 SE------PDEGLRELHARAKTK 1325


>gi|56552380|ref|YP_163219.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543954|gb|AAV90108.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 1047

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 99/676 (14%), Positives = 177/676 (26%), Gaps = 180/676 (26%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G    ++  L  +    +    +      +          +  + + L   +++  I   
Sbjct: 499  GPGSGKTKMLTQRIAHLIQEKAIPAEKCLLLTFTRRATDELKARVKQLLPETESPPIIHS 558

Query: 66   FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            F  L+   L +         +    +         E    S     +  +RF+  K    
Sbjct: 559  FHSLALDMLKKDSKAFGLAADFRIVDPQSLKKAFMEMSNLSSKRADEALERFSLLKRSGE 618

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                    + L    E  K+ N  LDF+DL+I   + L+     A +R K     + + +
Sbjct: 619  VGDLEE--EILRQSLENLKQDNHWLDFDDLLIKVVNGLENN---ASLREKWATAFSFLSV 673

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD  + Q+ ++  LT               L  +GD  Q+IY F GA+ +   R ++
Sbjct: 674  DEFQDIDIWQYRLVWLLTG----------RNTQLTVIGDPDQAIYHFRGADSECFTRLQQ 723

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
               +             L  ++RS ADI+   ++V    +                    
Sbjct: 724  DFPETV--------CRRLNRNYRSMADIVAAANRVMPENKG------------------- 756

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT--- 359
                              +    +       D   +       AR +A  I  ++G    
Sbjct: 757  ---------------QALRGQGDKILLYPASDEADE-------ARFVAQKIEELMGGHDM 794

Query: 360  -----DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                     +  K+     +D  VL R                N   I         +T 
Sbjct: 795  LTAQNGKNTAKSKETAFGFRDFAVLYRHNFQAKAFEKAF----NQAGIPFRKTAPIPITR 850

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
            HLA+    A    I     +     ++                  + E   +    ++ A
Sbjct: 851  HLAV---KAFIEKIEQSPQETLQDRLIV-----LKNIATELAQENQGEEAVLSPADREQA 902

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                         +  +   +   S   F   I                          N
Sbjct: 903  YSW----------LKIIAEKSGQQSHTFFLEQI-----------------------ALAN 929

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                ++Q                            + V +MT+H +KGLE P VF+    
Sbjct: 930  EADFHDQRG--------------------------DRVSLMTMHASKGLEFPAVFVTGLE 963

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             + F+  H                                           E  RL YV 
Sbjct: 964  EENFNLHHQLDNPT----------------------------------EIAEEKRLFYVA 989

Query: 655  MTRASDQLIICKHSNT 670
            +TRA D L +      
Sbjct: 990  LTRARDYLFLSYAKKR 1005


>gi|197336488|ref|YP_002157503.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
 gi|197315191|gb|ACH64639.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11]
          Length = 762

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 93/607 (15%), Positives = 181/607 (29%), Gaps = 159/607 (26%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y+   ++   +DF+ +++ +  L++K      IR K+ Q      +DE QDT++ Q+  +
Sbjct: 222 YDSTLRERESIDFDQVLVFSMLLIEKE---KDIRLKLKQRYQFFEVDEFQDTNVCQYRFL 278

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            +L  D           + L   GD KQ+IYSF G+    +    +              
Sbjct: 279 LALVGD----------GKNLAMFGDIKQAIYSFRGSNCYLMANINKQFSN--------LK 320

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           I  LP +FRST +++   + +     +   +   S   I H+ S        Q+   V  
Sbjct: 321 ITNLPDNFRSTHNVVAAGNAI----ADCMKIQLVSEHMIGHKES--------QVMPFVTC 368

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
             +                          A  I   I  +              I  ++I
Sbjct: 369 YENED----------------------QEAHNIVNKILALKADG----------IAPQNI 396

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            +L R  K    +            +S     +   L +   I+D++     I +     
Sbjct: 397 GILYRFNKLGQNMENYL----ISRGVSYRRIGNDKGLYEEPDIRDIVIYLHLIFNPYSIK 452

Query: 436 SFVCMLKSPL-FNFSEDDIFKICTQ-------RHETETVYEYIQKFANCG---ISKFQHV 484
           +  C   S + F  + + +             R     +  +I +   C          V
Sbjct: 453 AIRCFFASFIEFGVTTEALNSAIKSFQGRGDKRINNHQLLSFIVERGICKPSTKEHLSRV 512

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKK----------GRQQFISRFGNEVIDVLDE--- 531
           +K I     ++   +  D +   +  +             ++   +F   V D + E   
Sbjct: 513 LKIIMHCSGLSSRITSFDSYCRSVNEQYTNMPSDHCKAVEKRLQEQFWGAVRDFVKELST 572

Query: 532 ---------FLNFTLRN-----------------------EQNSYSSLQELISELEQYPP 559
                    F +   +                        E+ S ++L + I        
Sbjct: 573 IYVEQYKYMFYSQADQQKRLKMSRELATKHYHLIFNACYDEELSETNLTQYICTRPLLDK 632

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             K+    N  ++ +MT+H +KGLE   +F++    + +                     
Sbjct: 633 VTKKDDEENTTDIELMTIHASKGLEKEAIFIIGCSEESW--------------------- 671

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                         +          EE  RL YV +TRA + L     +  S        
Sbjct: 672 ------------WKESDIKAGTDKYEEELRLFYVALTRAIEHLFFTYSATRSFRNTEQPC 719

Query: 680 TWYDMVY 686
                ++
Sbjct: 720 NPLRFLF 726


>gi|23465762|ref|NP_696365.1| ATP-dependent DNA helicase [Bifidobacterium longum NCC2705]
 gi|23326449|gb|AAN25001.1| widely conserved ATP-dependent DNA helicase; Rep-like protein
           [Bifidobacterium longum NCC2705]
          Length = 1343

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/593 (14%), Positives = 175/593 (29%), Gaps = 101/593 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + K +    +     + E +  R  ++   + ++T     +   L   Y +AK++  +
Sbjct: 215 KRLKKDTDASWQAKLDDRAEHLHARCTYHCGALLETTRK-RDILLQLVEAYAQAKRERNM 273

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +F D  I    L+++      I  +  +  +H+L+DE QDTS  Q  ++ +L       
Sbjct: 274 AEFSDFTIAAYQLIERFPS---IGERTRRRYSHVLLDEYQDTSTTQAALLAALFHVDASQ 330

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           ++  +      AVGD  QSIY++ GA P      ++       +    +    L ++ R+
Sbjct: 331 RSAVN------AVGDPFQSIYAWRGASPGAFRMFQQDF-----HLSAGYKPFPLSVTRRN 379

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           +  +L   + +                             +  L  +V            
Sbjct: 380 SRIVLEAANNL------------------TLPLRSNPSRPSSSLMREVDVSSLDPMPDAP 421

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           E                 + R     I+            +    Q   + VL R +   
Sbjct: 422 EGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQE--QMPGEQKAPVAVLFRSKSHM 479

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
           P      +       ++        L +   I+DLMAL        D  S + +L +P F
Sbjct: 480 PEY----QAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRF 535

Query: 447 NFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS- 499
             S  D+  +     E       + + +      +   +++  V++   + +  A F   
Sbjct: 536 TMSAADLTMLARFAEEQNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPD 595

Query: 500 ------PHDFFTLI--------------------------------------LGAKKGRQ 515
                        +                                      L       
Sbjct: 596 VLLRGDLIKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLA 655

Query: 516 QFISRFGNEVIDVL-----DEFLNFTLRNEQ----NSYSSLQELISELEQYP--PTIKRA 564
             +    +     L     D  ++      Q        SL   I+ ++          +
Sbjct: 656 GVLHNPQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAAS 715

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                 +V +MTVH +KGLE   V +V   +  F       + I+   +   G
Sbjct: 716 LPDAPVDVELMTVHQSKGLEWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGG 768



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 23/143 (16%)

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ- 875
                   L+    RL E+       +   ++E ++   +       +++G++D + I   
Sbjct: 1197 DNATESKLVAWQRRLAESSWAKRIPA---WTERAIVVDVPGVG---LVNGKLDAVFIGGL 1250

Query: 876  ------QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYV 927
                      + ++KT     +  +      +AQL +Y  +L         S+   L YV
Sbjct: 1251 DPSSTTARFTVVDWKTGRRPTKPDDITRK--LAQLDMYRLLLAAVEGVELDSIDATLYYV 1308

Query: 928  SEPKVFIIPQNKLNKAFAEISTK 950
            SE      P   L +  A   TK
Sbjct: 1309 SE------PDEGLRELHARAKTK 1325


>gi|322375244|ref|ZP_08049757.1| exonuclease RexA [Streptococcus sp. C300]
 gi|321279507|gb|EFX56547.1| exonuclease RexA [Streptococcus sp. C300]
          Length = 562

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 109/296 (36%), Gaps = 31/296 (10%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS-METGNPTILKKAQTLQQASQTQC 61
             F    ++  E I + LW L  F    ++              + +    +   +Q   
Sbjct: 229 ADFANEKDKLTEQIKQALWNLESFFRYHLDNDAKEFPKAAYLEAVQQVLDEISSLNQESD 288

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDRFNTY 117
            +   ++L+      K    + +           L +     +     +  ++ D+    
Sbjct: 289 SQAYQAVLARIVAISKEKNGRALANSSRKADLKPLADAYNDERKVQFAKLGQLADQITIL 348

Query: 118 KMFK-STLASLTLAK-------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
              +     +  LAK            Y E K++    +F D+   T ++L+       +
Sbjct: 349 DYQEHYHGDTWELAKTFQNFMSDFVEAYRERKRQENAFEFADISHYTIEILENSP---QV 405

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R    +  + +++DE QDT+ IQ  ++  L           S+    F VGD KQSIY F
Sbjct: 406 REAYQERFHEVMVDEYQDTNHIQERMLELL-----------SNGHNRFMVGDIKQSIYRF 454

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
             A+P+    + +   +      ++  +I L  +FRS++++L+  + VF    + +
Sbjct: 455 RQADPQIFNEKFQRYAQ----NPKEGKLILLKENFRSSSEVLSATNDVFERLMDQE 506


>gi|227546375|ref|ZP_03976424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239622378|ref|ZP_04665409.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|227213356|gb|EEI81228.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239514375|gb|EEQ54242.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 1343

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/593 (14%), Positives = 175/593 (29%), Gaps = 101/593 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + K +    +     + E +  R  ++   + ++T     +   L   Y +AK++  +
Sbjct: 215 KRLKKDTDASWQAKLDDRAEHLHARCTYHCGALLETTRK-RDILLQLVEAYAQAKRERNM 273

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +F D  I    L+++      I  +  +  +H+L+DE QDTS  Q  ++ +L       
Sbjct: 274 AEFSDFTIAAYQLIERFPS---IGERTRRRYSHVLLDEYQDTSTTQAALLAALFHVDASQ 330

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           ++  +      AVGD  QSIY++ GA P      ++       +    +    L ++ R+
Sbjct: 331 RSAVN------AVGDPFQSIYAWRGASPGAFRMFQQDF-----HLSAGYKPFPLSVTRRN 379

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           +  +L   + +                             +  L  +V            
Sbjct: 380 SRIVLEAANNL------------------TLPLRSNPSRPSSSLMREVDVSSLDPMPDAP 421

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           E                 + R     I+            +    Q   + VL R +   
Sbjct: 422 EGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQE--QMPGEQKAPVAVLFRSKSHM 479

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
           P      +       ++        L +   I+DLMAL        D  S + +L +P F
Sbjct: 480 PEY----QAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRF 535

Query: 447 NFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS- 499
             S  D+  +     E       + + +      +   +++  V++   + +  A F   
Sbjct: 536 TMSAADLTMLARFAEEQNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPD 595

Query: 500 ------PHDFFTLI--------------------------------------LGAKKGRQ 515
                        +                                      L       
Sbjct: 596 VLLRGDLVKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLA 655

Query: 516 QFISRFGNEVIDVL-----DEFLNFTLRNEQ----NSYSSLQELISELEQYP--PTIKRA 564
             +    +     L     D  ++      Q        SL   I+ ++          +
Sbjct: 656 GVLHNPQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAAS 715

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                 +V +MTVH +KGLE   V +V   +  F       + I+   +   G
Sbjct: 716 LPDAPVDVELMTVHQSKGLEWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGG 768



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 23/143 (16%)

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ- 875
                   L+    RL E+       +   ++E ++   +       +++G++D + I   
Sbjct: 1197 DNATESKLVAWQRRLAESSWAKRIPA---WTERAIVVDVPGVG---LVNGKLDAVFIGGL 1250

Query: 876  ------QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYV 927
                      + ++KT     +  +      +AQL +Y  +L         S+   L YV
Sbjct: 1251 DPSSTTARFTVVDWKTGRRPTKPDDITRK--LAQLDMYRLLLAAVEGVELDSIDATLYYV 1308

Query: 928  SEPKVFIIPQNKLNKAFAEISTK 950
            SE      P   L +  A   TK
Sbjct: 1309 SE------PDEGLRELHARAKTK 1325


>gi|118618003|ref|YP_906335.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
 gi|118570113|gb|ABL04864.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99]
          Length = 1057

 Score =  150 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 100/980 (10%), Positives = 232/980 (23%), Gaps = 184/980 (18%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT----P 80
              V  ++ Y    +             L   +  +       LL+             P
Sbjct: 88  EPLVRSVHSYAYAVLRRAAERTGDAPPRL--LTSAEQDAIIRELLAGDLEDGPSAGSAWP 145

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +  +        + +L+  L +  +  +   +     +           A      YE+ 
Sbjct: 146 RHLLPALTTAGFATELRNLLARCAERGVDPMELERLGRRSGRPE--WAAAGRFARQYEQV 203

Query: 141 KKKNCV------------LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
                             L   +L+ +  +          +       +  +L+D+ Q  
Sbjct: 204 MLLRAAVGTATPQATAPALGVAELVGSALEAFASDPE---LLAAERARLRFLLVDDAQQL 260

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
                 ++  L                    GD  Q+++ F G EP  +L          
Sbjct: 261 DPQAARLVEVLAAGAEFA----------LIAGDPNQAVFGFRGGEPAGLLG--------- 301

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                    + L +S R    +   V  +               +  RH      + G+V
Sbjct: 302 -GPLDGGPAVTLTMSHRCAPAVARAVSGIARRLPG--------GSAGRHIDGTGTEDGSV 352

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            +     +  ++             D                                  
Sbjct: 353 TVRLAATAHAEAAAIADALRRAHLVD---------------------------------- 378

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRF 427
             +    + V+VR     P +            + V        L +  A+  L+ +   
Sbjct: 379 -GVPWSQMAVIVRS---VPRVAARLPRALAAAGVPVSIPPIGGSLAEEPAVGALLTVLAA 434

Query: 428 ILSQEDDLSFVCMLKSPLFNFSE-----------------------DDIFKICTQRHETE 464
                +    + ++  P+                            D +    ++     
Sbjct: 435 TAEGLNADQALALITGPIGRVDPVRLRQLRRTLRRAVAGRSPEDFGDLLVATLSEDGRPA 494

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRF-- 521
                  +         + V   +            P             + ++++    
Sbjct: 495 VGSAGSNQPPGPQFGPLRRVRAVLAAATRCHRAGQDPRYILWAAWHRSGLQNRWLAAIDR 554

Query: 522 ----GNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHN-EV 572
               G +    L+      + T +   + S +SL  L+  +               N +V
Sbjct: 555 GGPAGVQATRNLEAVTALFDITDQYVSRTSGASLSGLLEHVAALQLPRVSEEPVAQNEQV 614

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +++ H A G E  +V +       + +   +   +      D    +    S     + 
Sbjct: 615 GVLSAHAALGHEWDLVVIAGLQDGSWPNTIPRGGVLATQRLLDELDGVSGNASARAPLLA 674

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS----NQRTWYDMVYDS 688
            +    L               M RA  QL++      ++            ++++   +
Sbjct: 675 EERRLLLA-------------AMGRARRQLLVTAVDGDTSGGGQQAALPSEFFFEIAQWA 721

Query: 689 FHNDERVKKIKLTNS------------------INKDEWIAYEWSTHHPENTPLEREETI 730
             + + V    ++                     +     A             +     
Sbjct: 722 NGDSQAVAAPPVSAPRVLSAAAVVGRLRGVVCAPDGAVDDAARQCAATQLARLAKAGVAG 781

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT-------FNRG 783
                   +     +       +   L PST+ T     L  L   +            G
Sbjct: 782 ADPAGWHGLIPVSTTAALYGAGDVVTLTPSTLQTLNDCPLRWLAERHGGTNPRDLRATIG 841

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            ++H L+       E         +      A  + + E       I   +E        
Sbjct: 842 SVLHALIAEPGASEEQLLAELARVWKLLPFEADWFSSNELARHRAMIQAFVE----WRGQ 897

Query: 842 SCDSYSEVSVSGKIN-------CPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEI 893
           +    +EV V   I+            I + GR+D++       + I + KT      + 
Sbjct: 898 TRSELTEVGVEIDIDGVLDAARDDGGAIRLRGRVDRLERDGAGRLVILDIKTAKTPVSKD 957

Query: 894 EHIPYTHIAQLSIYEKILKD 913
           +       AQL++Y+  + +
Sbjct: 958 DAQQN---AQLAMYQLAVAE 974


>gi|209876554|ref|XP_002139719.1| UvrD/REP helicase domain-containing protein [Cryptosporidium muris
           RN66]
 gi|209555325|gb|EEA05370.1| UvrD/REP helicase domain-containing protein [Cryptosporidium muris
           RN66]
          Length = 985

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/662 (13%), Positives = 181/662 (27%), Gaps = 174/662 (26%)

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED--- 202
           +LD+ DLI+ T  LL++   +     KI +    I  DE QDTS  Q +++  L +    
Sbjct: 322 LLDYTDLILTTLRLLERSKETT---RKIQKLYPFIFCDEFQDTSKSQMKILEILAKRNKL 378

Query: 203 -------------------FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
                                   +       +  VGD+ Q+IYS+ G E     +    
Sbjct: 379 NISNQSSNLSSLWQISKISSGAEGSIKVQRGGITVVGDDDQAIYSWRGVEIGVFKQFSLA 438

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA--QGLSEDSTTTIRHRSSR 301
             +          I+ L  +FRST+ I+     + S       + +  +++  I  +   
Sbjct: 439 FSENY-------QIMFLKENFRSTSSIVDTSKCLISANSCRIPKEIYTNNSKGICPQVLF 491

Query: 302 IGQVGTVQLW-----------------EQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +       LW                 +  +    ++     E   S    + +      
Sbjct: 492 LSTHLDEALWICRTILSLRIRYKYVWTDFAILARTNEILMYIEKVFSDPKFVKRAIEDES 551

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKIS 403
              + + +I  ++ ++     G  R +  KD+  V   + K+  L               
Sbjct: 552 DHLKFSGSIDKILESEDKPKKG-WRNMMPKDLEAVKPEQIKNLILAEGTIPMENTAKSNP 610

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
            +  D   L     I D++A  R ++ +  D  F+ +   P   F  + +  I     E 
Sbjct: 611 KITRD---LLQKTEILDILAYCRLLVDETADDCFLRICNRPKRGFGNNILRLIEQSGAEG 667

Query: 464 ETVYE-------------------------------------------------YIQKFA 474
            ++                                                      + +
Sbjct: 668 VSLLRKSTQPLKGLTDVLCSNANKYNHTSNNSCPSILQICRKLVQCQSLNSSILADCRGS 727

Query: 475 NCGISKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFG----------- 522
              I   +   + +  L    +      +    +L                         
Sbjct: 728 KKIIECLRKFTECLDNLKKFLEEQVGVSEILKRLLSETGYLDYLDEDEKYCEDSESKKVN 787

Query: 523 --------------NEVIDVLDEFLNFTLRNEQNSYSSLQELISELE------------- 555
                          E  + +D+ +      + ++  ++  LI   E             
Sbjct: 788 KKRNSRKRFFSSTLEESEEHIDKLVQKKNTLKHSTVETVGALIKYSEMYNPNKQQPRGFD 847

Query: 556 -----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                    +       +   + + T+H +KGLE  VVF+      V             
Sbjct: 848 CLICFLLDVSHGLMRQKHGEGITLTTIHKSKGLEWQVVFMPRFNEGVIPLSR-------- 899

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                             ++  +D     K     E  R+ YVGMTRA  +L +    N 
Sbjct: 900 -----------------EDSTNTDAKIASKDYVTAEERRIAYVGMTRAKCRLFLSVPLNM 942

Query: 671 SN 672
             
Sbjct: 943 GK 944


>gi|215428673|ref|ZP_03426592.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T92]
          Length = 509

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/494 (13%), Positives = 140/494 (28%), Gaps = 78/494 (15%)

Query: 527 DVLDEFLNFTLRNE-----QNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTV 577
           + LD F +           ++S +S+  L++ L+              +   + V+++TV
Sbjct: 14  EHLDAFADVVAGYAERASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTV 73

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE  VV +      VF     +   +       P +      + +    V D   
Sbjct: 74  HAAKGLEWQVVAVAHLSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSA 133

Query: 638 HLKKSTQEEYNR----------------LLYVGMTRASDQLIICKHSNTSNEKKSNQRT- 680
              +    +                   LLYV +TRA D L++  H       K    + 
Sbjct: 134 VADRKQLSDKISEHRRLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSE 193

Query: 681 -----------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
                               +V          ++  L ++  +  W A   +    +   
Sbjct: 194 FLCELKDIIDRSAAAGDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVER 253

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKN-------DINEPYILNPSTIDTKGKTNLE----- 771
                      D       +  P +        D++                 L      
Sbjct: 254 GAALVAAAMSADLPGSTTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSV 313

Query: 772 ----SLLSDNQTFNRGLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWPAKEYKNLL 825
                L+ D     +     +L+  +   P+      +   ++  +        +  +L 
Sbjct: 314 SSLVELVGDPVGARQ-----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLP 368

Query: 826 LSITRLLENPM----MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS-QQN 877
            +  R + +P     +  A +  S++     +V      P  D ++ GRID + +     
Sbjct: 369 GAADREVGDPEELAALQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRIDAVFVDPDGG 428

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFII 935
             + ++KT                 QL++Y          P  S+     YV      + 
Sbjct: 429 ATVVDWKTGKPPHGPAAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFYYVRSGITVVP 486

Query: 936 PQNKLNKAFAEIST 949
            +       A + T
Sbjct: 487 DELPAPGELAMLLT 500


>gi|312133222|ref|YP_004000561.1| uvrd3 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772423|gb|ADQ01911.1| UvrD3 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1343

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/593 (14%), Positives = 175/593 (29%), Gaps = 101/593 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + K +    +     + E +  R  ++   + ++T     +   L   Y +AK++  +
Sbjct: 215 KRLKKDTDASWQAKLDDRAEHLHARCTYHCGALLETTRK-RDILLQLVEAYAQAKRERNM 273

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +F D  I    L+++      I  +  +  +H+L+DE QDTS  Q  ++ +L       
Sbjct: 274 AEFSDFTIAAYQLIERFPS---IGERTRRRYSHVLLDEYQDTSTTQAALLAALFHVDASQ 330

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           ++  +      AVGD  QSIY++ GA P      ++       +    +    L ++ R+
Sbjct: 331 RSAVN------AVGDPFQSIYAWRGASPGAFRMFQQDF-----HLSAGYKPFPLSVTRRN 379

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           +  +L   + +                             +  L  +V            
Sbjct: 380 SRIVLEAANNL------------------TLPLRSNPSRPSSSLMREVDVSSLDPMPDAP 421

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           E                 + R     I+            +    Q   + VL R +   
Sbjct: 422 EGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQE--QMPGEQKAPVAVLFRSKSHM 479

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
           P      +       ++        L +   I+DLMAL        D  S + +L +P F
Sbjct: 480 PEY----QAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRF 535

Query: 447 NFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS- 499
             S  D+  +     E       + + +      +   +++  V++   + +  A F   
Sbjct: 536 TMSAADLTMLARFAEEQNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPD 595

Query: 500 ------PHDFFTLI--------------------------------------LGAKKGRQ 515
                        +                                      L       
Sbjct: 596 VLLRGDLVKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLA 655

Query: 516 QFISRFGNEVIDVL-----DEFLNFTLRNEQ----NSYSSLQELISELEQYP--PTIKRA 564
             +    +     L     D  ++      Q        SL   I+ ++          +
Sbjct: 656 GVLHNPQHRANPALAHMPMDAIVDLVDTYTQEIAAEQTPSLHGFITWVDHLASVEDEAAS 715

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                 +V +MTVH +KGLE   V +V   +  F       + I+   +   G
Sbjct: 716 LPDAPVDVELMTVHQSKGLEWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGG 768



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 23/143 (16%)

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ- 875
                   L+    RL E+       +   ++E ++   +       +++G++D + I   
Sbjct: 1197 DNATESKLVAWQRRLAESSWAKRIPA---WTERAIVVDVPGVG---LVNGKLDAVFIGGL 1250

Query: 876  ------QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYV 927
                      + ++KT     +  +      +AQL +Y  +L         S+   L YV
Sbjct: 1251 DPSSTTARFTVVDWKTGRRPTKPDDITRK--LAQLDMYRLLLAAVEGVELDSIDATLYYV 1308

Query: 928  SEPKVFIIPQNKLNKAFAEISTK 950
            SE      P   L +  A   TK
Sbjct: 1309 SE------PDEGLRELRARAKTK 1325


>gi|326334231|ref|ZP_08200454.1| putative ATP-dependent DNA helicase (UvrD/REP) [Nocardioidaceae
           bacterium Broad-1]
 gi|325948022|gb|EGD40139.1| putative ATP-dependent DNA helicase (UvrD/REP) [Nocardioidaceae
           bacterium Broad-1]
          Length = 700

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 88/768 (11%), Positives = 191/768 (24%), Gaps = 172/768 (22%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL--SSFFLTQKFT 79
                    +    + +++    T    A    +    +        L  S   L +   
Sbjct: 82  RAAGEMRQRLRAMGAGAVQ--ARTFHSAALRQLRFFWPKVYGTELPTLTESKIPLIRAAA 139

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            ++ I   +   +    + +  K  +       +    +  +    + ++  ++ A YE+
Sbjct: 140 QRQRINVDQAQARDLASEIEWSKVSNVHPDDYPKSAEARGREVGGLTPSMVGHIYAAYED 199

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K+    +D ED+++ T  LL+  +    +  ++ ++     +DE QD S +Q  ++   
Sbjct: 200 VKRTQARMDMEDVLLLTAGLLEHDE---RVAAQVRRQYKWFTVDEFQDVSPLQSALLDLW 256

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                           +  VGD  Q+IY+F GA+            +         + +E
Sbjct: 257 LG----------GRNEICVVGDPAQTIYTFAGADAA--------YLRDFPKKHPGATSVE 298

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS+  ++   +K+     +A          ++ ++ R        +         
Sbjct: 299 LVRNYRSSPQVVRAANKILEGTPSAG---------VQLQAQRDAGPAVEHV--------- 340

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                             ++      A  +A  I  +  +               ++ +L
Sbjct: 341 ------------------EQPDEVAEAEGVAAEILRLHQSGKP----------YNEMAIL 372

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +              +I  V        D   +++ +   R             
Sbjct: 373 FRINAQSEAYEDALTA----RRIPYVVRGAARFFDRPEVREAVTRIRGAA---------- 418

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
                        I     +                 G  + +   +    LI       
Sbjct: 419 ------RGGQGAVIGDELLESVHGILAGMGWTSEPPDGRGQTRDRWESWQALIDQ----- 467

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                                                          L  L++EL++   
Sbjct: 468 ------------------------------------ARAFAAAGG-DLAGLVAELDRRAA 490

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                  +    V + T H AKGLE   VFLV             +              
Sbjct: 491 EQHAPVPSG---VTLATFHAAKGLEWDSVFLVGLQDGTMPFILRGEEPTP---------- 537

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                                 +  EE  RLLYVG+TRA   L +         + + +R
Sbjct: 538 ----------------------AEIEEERRLLYVGLTRARVDLTLSWALARQPGQAARRR 575

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
               +            +   +      +       +   +              +    
Sbjct: 576 PSRFLDPLRPTRSTAPARRPGSGKARMCKACGGPLGSAAEKRIGRHEGCDAPYDEELYGR 635

Query: 740 PKKLFSPIKNDINEPYILNPSTID----TKGKTNLESLLSDNQTFNRG 783
            K+        I +P  +  +        + K      L       RG
Sbjct: 636 LKQWRKETAEAIRKPAFVVFTDATLEQIAEQKPGTLQDLQRIAGIGRG 683


>gi|294786537|ref|ZP_06751791.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305]
 gi|315226115|ref|ZP_07867903.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105]
 gi|294485370|gb|EFG33004.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305]
 gi|315120247|gb|EFT83379.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105]
          Length = 1674

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/459 (15%), Positives = 161/459 (35%), Gaps = 41/459 (8%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-QTQCIEERFSLLSSFFLTQKFTPQKN 83
                 +   ++L+ E GN  I  +  T++ A  + +  ++ FS L           + +
Sbjct: 207 GKFPGLVKDTLALNAEIGNSMIGPECDTVEAAIGRIRAWDQEFSRLV-----GPMKEKVD 261

Query: 84  IITQEINKKSPDLKEKLKKS----QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
               ++++  P+   K  +     ++    + D+ N             +       Y++
Sbjct: 262 QALADLDQTKPEDLSKRTEEVKGYKERLKALTDKANLCDCLLKVTRRREMLVDFVLAYDQ 321

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           AKK   +++F D  I    L+       WI  +  Q+ +H+ +DE QDTS  Q +++ +L
Sbjct: 322 AKKDQGLVEFSDFTIGAFRLVAHYP---WICQEFRQKYSHVFLDEYQDTSTTQAKLLNAL 378

Query: 200 T------EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
                   +             + AVGD  QSIY++ GA P                  +
Sbjct: 379 FHKPLRPGEGTRPAGAQDLVSFVTAVGDPFQSIYAWRGASPGAFAMFLDDYG------ME 432

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
           +  I ++  + R+ A IL   +++ +      G+   +   +   ++ + +   V+  E 
Sbjct: 433 ESQIHKMTYTRRNPAIILDAANRLTA------GMRRPAPDPLGRTATSVRKEVPVEKLEP 486

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG-----TDTIFSNGKK 368
              + ++                    +   +AR     +           + +     +
Sbjct: 487 TDPKEEAVLGLMAYKTMDQEADGIARFAKEAIARA-RDRVQRRKRTAESSGEPMSQTDYQ 545

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           R +    + +L+R ++                 ++        L +    +DL+AL   +
Sbjct: 546 RELNKTHVALLLRSKRHMDSYLQGL----TRQGLTYQVVGDQSLWESPGAQDLLALLTVV 601

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
               D  + + +L +P F  ++ D+  +     + +  Y
Sbjct: 602 TDHTDSSALLRLLATPRFGLAKKDLIVLAALAKKADQKY 640



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 54/194 (27%), Gaps = 34/194 (17%)

Query: 770  LESLLSDNQTFNRGLIIHKLLQVI----FTLPEHKRKNFITSYCTKNAKLWPAKEYK--- 822
                 + +     G   H   Q             R+       T   +     E +   
Sbjct: 1430 RPMPQATSDLAQAGTDFHAWAQEFILPASLSSSAGRRVDFGEILTLRQRQKEEVELECAA 1489

Query: 823  -----NLLLSITRLLENPMMTTAMSCDSYS----------EVSVSGKINCPKKD-IIISG 866
                      +  L  +P MT       +S          E S++  I   +       G
Sbjct: 1490 QTGRGEGAEEVADLSPSPRMTAWKKNLIHSVWASRPAFAVEQSITDTIEDGRGGRHHFRG 1549

Query: 867  RIDQISI-------SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP--N 917
             +D +           +   I ++KT H  P +   +    +AQL IY  +  D      
Sbjct: 1550 SLDAVFYGSLDDPDKPETFTIVDWKTGH-KPTDPGQVKEK-LAQLDIYRLMFSDLMGIDI 1607

Query: 918  KSLVCLLIYVSEPK 931
             S+   L YV E +
Sbjct: 1608 DSIDAELYYVGEKR 1621



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/248 (8%), Positives = 60/248 (24%), Gaps = 3/248 (1%)

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
                +D        +E +   S  E    L +   + ++  + ++    +         E
Sbjct: 979  AFADVDSLEKALTDDETSQAVSTAETRIRLRKKGASDRQETALDY---LLRAAAEGDQKE 1035

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               +                 +  +          ++ P  +  +     L     ++  
Sbjct: 1036 LDRLLTPQRTKTGKEKSATGNLIQIKKKISLALGELYSPGLEPVSKRPMSLRSQTGQALL 1095

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            ++  RL YV  TRA   L +  + +  N+              S      +         
Sbjct: 1096 DDERRLAYVAFTRAEYDLFLTTYESAVNKVDDRLYDSVHFTTVSDALQLGLIDPPAAGGG 1155

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
             + +      +            + +           +LF        E  +L  +   +
Sbjct: 1156 ARAQEEGRVPAVDPGRKRAWLDSQAMDLRRFASDFWLELFGAYSRLEQEDPVLVVADTSS 1215

Query: 765  KGKTNLES 772
                  ++
Sbjct: 1216 LSLPQQDA 1223


>gi|172064794|ref|YP_001812444.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
 gi|171998279|gb|ACB69195.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6]
          Length = 571

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/692 (13%), Positives = 193/692 (27%), Gaps = 160/692 (23%)

Query: 7   LSLNESYELIYKD-----LWPLPYFQVSDINKYVSL----SMETGNPTILK-KAQTLQQA 56
           L+  +    + +        P      +   K   L    +   G  T  K  A  L++ 
Sbjct: 8   LNPQQREVALLRRHCVAIACPGAGKTKTIATKAARLLEDPAAVVGAVTFSKDAALELRER 67

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK--EKLKKSQDEFIKIRDRF 114
                + +    L++         Q     +  +  + D      L ++  E        
Sbjct: 68  ILAIAVPDAKRRLTAGTFHSLAFRQIGRPGRARHDIASDGDRFGMLGRAIAELGFEWKVE 127

Query: 115 NTYKMFKSTLASLTLA------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
               + +    +   A        L A Y+EA ++N  +DF+D++      ++  D+  +
Sbjct: 128 EAVPIIERIKTNFGRAEPGSSEAKLYAAYQEALERNGKIDFQDMLRLAVAGMESGDIRPY 187

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                      +L+DE QDT  +Q+  +               +   +  VGD+ QSIY 
Sbjct: 188 -------RFTDLLVDEFQDTDPLQYRWVELHAR----------AGAQVTVVGDDDQSIYG 230

Query: 229 FHGAE-PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           F  A   + +                    I L  ++R  ++IL+  D+V     +    
Sbjct: 231 FRSALGVRGMESFLGTF---------DAQKIVLGSNYRCRSEILSAADRVIRNNVDRIPK 281

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              +           G  G V            +   +     +  ++L  + +A     
Sbjct: 282 VLHADR---------GGGGAV---------SSQRFEDEYGDAVAAVEALQAQMAAGRT-- 321

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
                                         +L R  ++   I  + R     + +     
Sbjct: 322 ----------------------------CAILARTNRNLDPIESVCRS----HGVPYYRA 349

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
               + +      +  L + +  ++ +     +L       S  D+  +           
Sbjct: 350 SGGSVLNRPQAALMCNLLQIVEGRKQNG-VDAVLG--YMGISSPDLRALHRDMGAEFVQR 406

Query: 468 EYIQKFA----NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           +     A        + ++  +K + E   +            +     G  +     G+
Sbjct: 407 QKQDLVALGLTEDTATAYRAFMKRLAEWQSLCVREFHSLALEGVFEWMMGYAK-----GD 461

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM-TVHTAKG 582
             I  L           Q +Y  +  L          ++R ++   + V ++ T+H +KG
Sbjct: 462 PAIRAL-----------QCTYDVIGRLNGPFTSRIEFLQRDNNKPGDGVLVLTTMHGSKG 510

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   V++      V                                             
Sbjct: 511 LEWDHVWISRAEEGVVPDDKSP-------------------------------------- 532

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            + E  RL YV MTRA + L+I      +  +
Sbjct: 533 -ESEERRLFYVAMTRARETLVITSIQKNAVSR 563


>gi|302542682|ref|ZP_07295024.1| putative ATP-dependent DNA helicase PcrA [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460300|gb|EFL23393.1| putative ATP-dependent DNA helicase PcrA [Streptomyces
           himastatinicus ATCC 53653]
          Length = 733

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/659 (14%), Positives = 176/659 (26%), Gaps = 153/659 (23%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              K  +           + A YE+ K+   V+DFED+++ T  +L   +    I  ++ 
Sbjct: 152 AAAKHGREAPRDPAEIGRIYAGYEQLKRDRGVIDFEDVLLLTVGVL---EERPDIADQVR 208

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++  H ++DE QD S +Q  ++     D           ++L  VGD  Q+IYSF GA P
Sbjct: 209 RQYQHFVVDEYQDVSPLQQRLLELWLGD----------RQSLCVVGDASQTIYSFTGATP 258

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L  +              ++++L   +RST  ++ + + + S           +   
Sbjct: 259 DHLLDFRTR--------HPGATVVKLIRDYRSTPQVVHLANGLLSQARGR-----AAEHR 305

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           +   S R      V                    +T+Y D   +       A   A  I 
Sbjct: 306 LELVSQRDAGPEPV--------------------YTAYADEPAE-------AEATARRIR 338

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +I        G    +    + VL R    + L          D ++           +
Sbjct: 339 ELITPVAQGGAG----VPPSQVAVLYRVNAQSELYEQAL----ADAEVPYQLRGAERFFE 390

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              +++   L R                S     S+DDI         T          +
Sbjct: 391 RPEVREAGMLLRGAAR----------AGSADPVLSDDDIPSQVRAVLGTRGWTPEPPAGS 440

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                +++ +   +      A+                     ++               
Sbjct: 441 GAVRDRWESLAALVRLAEDFARGRPGATL-----------SDLVAELDERA--------- 480

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                      +L  L +                           AKGLE   VFLV   
Sbjct: 481 AAQHAPTVEGVTLASLHA---------------------------AKGLEWDAVFLVGLT 513

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +                                     +         EE  RLLYVG
Sbjct: 514 EGMMP-----------------------------------ITYAKTDQQIEEERRLLYVG 538

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +TRA   L +    + +   ++++R    +      +     ++       +        
Sbjct: 539 VTRARRHLSLSWALSRAPGGRASRRPTRFLNGLRPGSAAPAARMPGGGGGIERGTGPSAP 598

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                                E K+ +    P + D      L+    +  G     + 
Sbjct: 599 VRKRRTPVHCRVCGRTLTDAGEMKLMRCEDCPSELDEALYERLHDWRAEQAGLLGQPAF 657


>gi|184200508|ref|YP_001854715.1| putative ATP-dependent DNA helicase [Kocuria rhizophila DC2201]
 gi|183580738|dbj|BAG29209.1| ATP-dependent DNA helicase UvrD2 [Kocuria rhizophila DC2201]
          Length = 596

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 89/573 (15%), Positives = 165/573 (28%), Gaps = 153/573 (26%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           +   + L   YE+ K    ++DFED+++ T  +L++ +    I   +  +    ++DE Q
Sbjct: 174 VRTMQRLYQSYEDLKADRHLIDFEDVLLITVGILEEDE---RIAAAVHAQYRQFVVDEYQ 230

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S +Q  ++ +             S   L  VGD  Q+IYSF GA  + +L        
Sbjct: 231 DVSPLQQRLLDAWLG----------SRDDLCVVGDASQTIYSFTGATSRHLLEFPSRYP- 279

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    S++EL   +RST  ++   +++ +                   + R     
Sbjct: 280 -------GASVVELIRDYRSTPQVVNTANRLLA-------------------ARRPSLTS 313

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
           T   W   +     +    + +W  Y D   +       A  +A  I ++I         
Sbjct: 314 TPDTWATPLRLVSQRPAGPEPAWNEYPDDEAE-------AAGVAVRIQDLIDDG------ 360

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +   +I VL R    +            D  I           +   I+  +   R
Sbjct: 361 ----VAPHEIAVLFRTNGQSQTFEAAL----ADANIGFQLRGSERFFNRPEIRQAIVQIR 412

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                           S       D        R    ++     + A    S  +   +
Sbjct: 413 ----------------SAARTAGADRADVPQQVRDMLGSLG--YTERAPRSDSATRAKWE 454

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +  L+ +A                                                  S
Sbjct: 455 SLRALVSLADTM------------------------------------ARRAAADGETLS 478

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L     E+E+   T     +   + V + ++H+AKGLE   VFLV     +         
Sbjct: 479 LAGFAQEIERRAAT---QEAPVVDGVTLASLHSAKGLEWDAVFLVGLSEGLMP------- 528

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                       +         +E  RLLYVG+TRA + L+   
Sbjct: 529 ----------------------------ISFADTPDAMDEERRLLYVGITRAREHLVFSW 560

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             + +   + N+     +            + +
Sbjct: 561 SLSRTPGGRPNRARSRFLDAVLPPAPRTPARRR 593


>gi|317482570|ref|ZP_07941585.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915992|gb|EFV37399.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 1343

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 86/593 (14%), Positives = 175/593 (29%), Gaps = 101/593 (17%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + + K +    +     + E +  R  ++   + ++T     +   L   Y +AK++  +
Sbjct: 215 KRLKKDTDASWQAKLDDRAEHLHARCTYHCGALLETTRK-RDILLQLVEAYAQAKRERNM 273

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            +F D  I    L+++      I  +  +  +H+L+DE QDTS  Q  ++ +L       
Sbjct: 274 AEFSDFTIAAYQLIERFPS---IGERTRRRYSHVLLDEYQDTSTTQAALLAALFHVDASQ 330

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           ++  +      AVGD  QSIY++ GA P      ++       +    +    L ++ R+
Sbjct: 331 RSAVN------AVGDPFQSIYAWRGASPGAFRMFQQDF-----HLSAGYKPFPLSVTRRN 379

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           +  +L   + +                             +  L  +V            
Sbjct: 380 SRIVLEAANNL------------------TLPLRSNPSRPSSSLMREVDVSSLDPMPDAP 421

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           E                 + R     I+            +    Q   + VL R +   
Sbjct: 422 EGTLGVLGFATAGQEIDAVVRFCKTAIARHRSAAEQQE--QMPGEQKAPVAVLFRSKSHM 479

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
           P      +       ++        L +   I+DLMAL        D  S + +L +P F
Sbjct: 480 PEY----QAALEQAGLTTFVVGYSALLERPEIRDLMALLHVAADHTDTGSLMRLLATPRF 535

Query: 447 NFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS- 499
             S  D+  +     E       + + +      +   +++  V++   + +  A F   
Sbjct: 536 TMSAADLTMLARFAEEQNTEQRFQALVQAGLAQPDTPANEWAAVVREYRDQVANAVFLPD 595

Query: 500 ------PHDFFTLI--------------------------------------LGAKKGRQ 515
                        +                                      L       
Sbjct: 596 VLLRGDLVKLLERLSAHGRNAITRAAVMLRQVHDAVGRPLGDVIRAGIEALDLDIDTVLA 655

Query: 516 QFISRFGNEVIDVL-----DEFLNFTLRNEQ----NSYSSLQELISELEQYP--PTIKRA 564
             +    +     L     D  ++      Q        SL   I+ ++          +
Sbjct: 656 GVLHNPQHRANPALAHMPMDAIVDLVDMYTQEIAAEQTPSLHGFITWVDHLASVEDEAAS 715

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                 +V +MTVH +KGLE   V +V   +  F       + I+   +   G
Sbjct: 716 LPDAPVDVELMTVHQSKGLEWDAVAVVGLTAVGFPSNQGDHLKIVLDEHHTGG 768



 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 23/143 (16%)

Query: 817  PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ- 875
                   L+    RL E+       +   ++E ++   +       +++G++D + I   
Sbjct: 1197 DNATESKLVAWQRRLAESSWAKRIPA---WTERAIVVDVPGVG---LVNGKLDAVFIGGL 1250

Query: 876  ------QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYV 927
                      + ++KT     +  +      +AQL +Y  +L         S+   L YV
Sbjct: 1251 DPSSTTARFTVVDWKTGRRPTKPDDITRK--LAQLDMYRLLLAAVEGVELDSVDATLYYV 1308

Query: 928  SEPKVFIIPQNKLNKAFAEISTK 950
            SE      P   L +  A   TK
Sbjct: 1309 SE------PDEGLRELHARAKTK 1325


>gi|309807504|ref|ZP_07701463.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169254|gb|EFO71313.1| putative ATP-dependent nuclease subunit A [Lactobacillus iners
           LactinV 01V1-a]
          Length = 546

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/521 (14%), Positives = 158/521 (30%), Gaps = 69/521 (13%)

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFL 392
             +E +       +   I  +   D    +     KR I+  DI +L R + +       
Sbjct: 22  EEEEVNDLDEINLVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE----NLK 77

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                 + K+ +  +D         +  +    + I + + D+  V +++SPL+ F+E +
Sbjct: 78  LFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEPE 137

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLIL 508
             KI      + + Y+ I  +      +     ++ I  +    + +      +    I 
Sbjct: 138 FAKIRIA-SRSTSFYDAIINYIQTSDDELSIKCKNFINELSHFRNFSIDHRISELICDIF 196

Query: 509 GAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIK 562
                 +       G +    L+         E + +  L + I+ +++        +  
Sbjct: 197 QNTHIIELVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQP 256

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
            +     + +++MT+H +KGLE P+VFL+    +           I        G+ I  
Sbjct: 257 LSSKDAQDAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLGLTITT 314

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--T 680
              +  + + S      K    EE  R+LYVG+TRA  +LI+             Q    
Sbjct: 315 ADYRIDSLVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANEKIIPDFQNKLD 374

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT------------------ 722
            ++ +     ++       L   +   +      S    E                    
Sbjct: 375 AHNQLPFIDKSNAISPMSFLGPELFVHQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQAS 434

Query: 723 ---------------------------PLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                                      P +   T        +I K    P   + +   
Sbjct: 435 VQISNQSRSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNSK 494

Query: 756 ILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF 794
           ++N +       ++  + L          G  +H LLQ   
Sbjct: 495 LINSANKYLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYD 535


>gi|167010337|ref|ZP_02275268.1| ATP-dependent DNA helicase rep [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 422

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/492 (14%), Positives = 142/492 (28%), Gaps = 110/492 (22%)

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + G+ P+ +   +               +I+L  +FRST  IL V +K+     +     
Sbjct: 1   WRGSRPENLRHLQEDF--------ADLKVIKLEQNFRSTGRILNVANKLIENNSHIFDK- 51

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                              +++   +  + +                          A+ 
Sbjct: 52  --------KLWFNKDYGEQIKVISLINDEDE--------------------------AQF 77

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           IA  I         F +  K   +  D  VL+R      L+    +  K    I    + 
Sbjct: 78  IASDI---------FFDRVKTKSKNSDYAVLIRSNYQAYLLERYMQIHK----IPYTISG 124

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
                    IKD+++  R I++ +DD +F+ ++ +P        + K+     +    + 
Sbjct: 125 GSSFFSKAEIKDIISYLRLIVNPDDDRAFLRVINTPKREVGSATVHKLGEYASQHHCSFF 184

Query: 469 YIQKFANCGISK------FQHVIKYIHELIHIAQF-CSPHDF---FTLILGAKKGRQQFI 518
           +          +             I           S  +        +     RQ  I
Sbjct: 185 HTLYSLENFELRDFTKRNLISFKDLILNTQQQINTSISVQELKNIINSFIDNISYRQWLI 244

Query: 519 SRFGNE-----VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
               +E         + E     +N       N   SL  +++++       +     N 
Sbjct: 245 DSSSSEKQAEFRYANIIEVTKWIVNQLEDESYNGLESLATVLNKMLLIDILDRDNEDKND 304

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           N+V+I+T+H +KGLE   V+++     +  H+                            
Sbjct: 305 NQVQIITMHASKGLEFKKVYIMGMEEGILPHQQS-------------------------- 338

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                    ++  + E+  RL YV +TRA + L I    +     +         + +  
Sbjct: 339 ---------IEDDSIEDERRLAYVAITRARENLTITMTKHRKKFGEKQVSVPSRFIDELP 389

Query: 690 HNDERVKKIKLT 701
             D      +  
Sbjct: 390 ETDLYWVGTEKE 401


>gi|296130687|ref|YP_003637937.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
 gi|296022502|gb|ADG75738.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
          Length = 643

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 87/694 (12%), Positives = 164/694 (23%), Gaps = 173/694 (24%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + + +          +      +L                           ++ 
Sbjct: 73  AAGEMRDRLAR---LGVGGVQARTFHAAALRQLRYFWRATGLPGDGPVLIDADGPGAQYR 129

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L         TP +++    +   S +L      +  +              +     L
Sbjct: 130 YLRGALGAVLRTPARDVDASMVTDLSTELTWA---AARDLTPAEYEAQAEAAGRKPGMRL 186

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           +        Y  AK+   VLDF DL+     LL+  D    +   + Q+    ++DE QD
Sbjct: 187 STVAGAMRRYTTAKRAAGVLDFADLLATCARLLEDDDE---VAATVRQQYAAFVVDEYQD 243

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T   Q  ++ +   D            TL  VGD +Q++Y+F GA+   +          
Sbjct: 244 TDPAQQRLLDAWLGD----------RDTLAVVGDARQAVYAFKGADTSLLRDFTVRFPHA 293

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     ++L   +RST  ++ V +++                     + R    G 
Sbjct: 294 V--------TVDLVQDYRSTTQVVDVANRLM--------------------AGRPESAGP 325

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             +            +          D   +++       R+  T+   +          
Sbjct: 326 ALVGML--------GDGPAVQVVQGDDEEDEDA-------RVVATVRRWLAAG------- 363

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I VL R       +T   R    D  + VV  D     D   +  + AL R 
Sbjct: 364 ---VPPEEIAVLHRFNAQAVALTAALR----DAGVPVVAADGQAYFDRREVAHVRALLRE 416

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
             ++  D     +L   L     D                         G    +     
Sbjct: 417 HAARTPDEDAADVLGQVLARVGHD-------------------PDAPPDGTGAARERWDA 457

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +  L  +                    +   +       +                    
Sbjct: 458 LEALRSLVATLPA--------ALTGTVRALSADLDRRAAED------------------- 490

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
                                   V + T+H AKGLE   V +                 
Sbjct: 491 ----------------HAPPGRGAVTVSTIHKAKGLEWDAVVVARATEGSLPS------- 527

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                       +     +   E  RL YV +TRA   L+    
Sbjct: 528 ----------------------------VYATTSAETAEERRLAYVAVTRARRHLVATWA 559

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                 + +    +            R       
Sbjct: 560 GARRGGRANTASPYLSAFAAPRARAGRADDPPTP 593


>gi|75907647|ref|YP_321943.1| UvrD/REP helicase [Anabaena variabilis ATCC 29413]
 gi|75701372|gb|ABA21048.1| UvrD/REP helicase [Anabaena variabilis ATCC 29413]
          Length = 833

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 89/679 (13%), Positives = 190/679 (27%), Gaps = 108/679 (15%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
              LL       + T +    +    +  PDL   +           ++   +   ++T 
Sbjct: 172 YLRLLEGQQFDGEETERLRRQSVLRTEILPDLATTVIHEAKSSGISPEQLRQW-SQETTD 230

Query: 125 A--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
           A   LT+A  L   Y+   +    +D++D+I+    +L+        R     ++  +  
Sbjct: 231 AYEILTIAAGLYEQYQNLMRSRDFIDYDDMILAALRVLENDSA----RRIEQNQVFAVFE 286

Query: 183 DEVQDTSLIQWEVIRSLTE----------------------------------------- 201
           DE QD+S +Q +++  L                                           
Sbjct: 287 DEAQDSSPLQTQLLEILASGGEAGGRGQGAGGELTARFSPNPQSPIPNPQSPIPNPQSPI 346

Query: 202 --------DFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAG 252
                   +      +  SP  L  VGD  Q+I S F  A+P       +          
Sbjct: 347 PNPQSPIPNPQSPIPSPQSPINLIRVGDPNQAINSTFTPADPIYFREFCQE-------CD 399

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           +   +  +  + RSTA I+   +       +        +  +   +          +  
Sbjct: 400 RSRRLATMDQAGRSTAMIIAAANFALEWVNSTYIAKNQKSPHLPLSTPFS----LQTIRP 455

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
              +  +     +     +  D              ++  +  ++  D   S        
Sbjct: 456 VHQTDVNPAPVGRGLELHTPRDI-------YHTVELLSQRVIELLTEDMGKSA------- 501

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                VLVR+ +    +         ++ I++          H+  ++++AL +F     
Sbjct: 502 ----AVLVRENRQGRWLAEALAPKCKEHNITLFDVGEGDRRSHVP-QEILALLQFCDRPH 556

Query: 433 DDLSFVCMLKSPLFN--FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                   L++ +        D+  + +   E    + Y    A       Q        
Sbjct: 557 SPDYLKAALEALVKRQLIPTQDLNALASLPEE----FLYPGPLAAPQSEVVQKASHLCRS 612

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           L+        +   + +       Q  ++       D L E +N  +    +  + L  L
Sbjct: 613 LLRARLELPLYQIISFLALTLNYDQAELAT-----ADKLSERVNKQIAGNNSMGAMLSAL 667

Query: 551 ISELEQYPPTIKRAHSANH-----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
              +            +        ++ ++T+H AKGL+   VF+      +   +    
Sbjct: 668 SEIVNSERFEPVETDDSEARYTRNGQLTVITMHKAKGLDWNYVFIPFLHENLIPGRFWVP 727

Query: 606 -----MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                +                   ++    V+   +  K     E  RLLYV MTRA  
Sbjct: 728 PQSQFLGDFTLSEVARAQIRAALHGETGIPEVTSAWEQAKHLKTAEEYRLLYVAMTRAKQ 787

Query: 661 QLIICKHSNTSNEKKSNQR 679
            L +             + 
Sbjct: 788 LLWMSAAQKAPFTWSKPEN 806


>gi|227832530|ref|YP_002834237.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453546|gb|ACP32299.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 684

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 86/650 (13%), Positives = 175/650 (26%), Gaps = 166/650 (25%)

Query: 130 AKYLNAHYEEAKKKNCV--LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              +   YE+ K    +  LDF+DL+++    ++     A +     ++    ++DE QD
Sbjct: 171 VAEVFRRYEDMKATPDLMYLDFDDLLMHIAGAIENVPSVAEV---FREQYRTFVVDEYQD 227

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q  V+ +   +             L  VGD  Q+IYSF+GA P  +L   R   + 
Sbjct: 228 VTPLQQRVLEAWLGE----------RDDLTVVGDANQTIYSFNGASPDYLLNFSRTYPQ- 276

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++++L   +RST  +  + ++V S                            
Sbjct: 277 -------ATVVKLQRDYRSTPQVTDLANEVISKASGR------------------AAGTR 311

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           ++L        +                     S  I A+ +A  +  ++          
Sbjct: 312 LELQGMREPGPEPTFK--------------AYESEEIEAKEVAGQVLTLLNQG------- 350

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              ++A +I +L R    +            D  +               I + + +   
Sbjct: 351 ---VKASEIAILYRINAQSEQFEQAL----ADAGVVYQVRGGEGFFRRPEILEAIRVLIA 403

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
              ++D  +    +                          E          ++ +   + 
Sbjct: 404 ATRRDDLPNDPVAVA--------------------RAAFVELGLSATEPQGAQARERWQS 443

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +  L          D    I+   +G                                 L
Sbjct: 444 LTAL---------VDLIAQIVEDHEGI-------------------------------DL 463

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             ++ EL +               V + T+H AKGLE   VFLV    ++    H  K  
Sbjct: 464 PGVLGELHRRSENKHNPTMEG---VTLATIHAAKGLEWDAVFLVGLTEKLLPINHAIKSG 520

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                                EE  RL YVG+TRA + L +   
Sbjct: 521 ---------------------------------DEHVEEERRLFYVGITRAREHLALSWA 547

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
              +   ++++      +       E  +         +    + + S+   +       
Sbjct: 548 LAKTTGSRASRE-RTRFLDGVVPGIEESQSSNRRYRPRRCRVCSGQLSSPAEKVLGRHEW 606

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
              +   D     +   + +  D   P  +  S    +  +         
Sbjct: 607 CEYEGDEDVFNALRAWRASVAKDSQVPAYVVFSDATLQAISEALPANEAE 656


>gi|289674808|ref|ZP_06495698.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           syringae FF5]
          Length = 462

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 135/415 (32%), Gaps = 36/415 (8%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
           + L   +     E          LT +   +       ++           ++  +    
Sbjct: 66  EKLAAWAADDTQEALDLGTGFTRLTPEGIAEAWKSEPPVHPAF--------EAMAQLKAA 117

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            D                 A++++A +EE K++   + F+D++I  +  L        + 
Sbjct: 118 LDGLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLIRLDAAL-HGAGGERLA 172

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 173 TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEANDEQTGLFLIGDPKQAIYAFR 227

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+    LR ++                 L  ++RS+  ++  V+ VF+  E  +     
Sbjct: 228 GADIYTYLRARQA---------TDGRWHTLDTNYRSSHTMVESVNHVFTRAEQREQGRGA 278

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                 H +         Q  ++ +    +               +        LA   A
Sbjct: 279 FLFRDEHGNQVPFSDALAQGRKETLHVDGAPLTALTVWHLQSDQPVSGVVYRQQLAASCA 338

Query: 351 YTISNMIGTDTIFSNGKK------RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             I  ++      S G        R ++  DI +LVR  K+   +             SV
Sbjct: 339 SEIVRLLNAGQQRSAGFVTPDNTLRGLRPADIAILVRDGKEAQAVRQQLTA---RGVRSV 395

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +D+  +       DL++  +     + + +    L     +    ++ ++   
Sbjct: 396 YLSDKDSVFAAQEAHDLLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD 450


>gi|254821705|ref|ZP_05226706.1| hypothetical protein MintA_17347 [Mycobacterium intracellulare ATCC
           13950]
          Length = 595

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/543 (13%), Positives = 147/543 (27%), Gaps = 82/543 (15%)

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG----RQQFISRFGNEVIDVLDEFLN 534
            +   +   +  L          D    +          R       G    + LD F +
Sbjct: 39  QRITALGAELSALRAHLGH-PLADLVAEVRRVLGVDCEVRAAAGVAAGWAGTEHLDAFAD 97

Query: 535 FTLRN-----------EQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHT 579
                           + ++ +S+  L+  L+              +   + V+++TVH+
Sbjct: 98  VVAGYAERADGAATRLDASATASVGALLGFLDAAEAVENGLAPAPLAVARDRVQVLTVHS 157

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP---------------- 623
           AKGLE  VV +       F     +   +  +    P +                     
Sbjct: 158 AKGLEWQVVAVAHLSGGTFPSTASRSTWLTDAAELPPLLRGDRAAAGALGIPVLDTSDVT 217

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT--- 680
             K  ++ +S+  + L +   +E  RLLYV +TRA D L++  H   +   K    +   
Sbjct: 218 NRKQLSDKISEHRRQLDQRRVDEERRLLYVAITRAEDTLLVSGHHWGATGVKPRGPSDFL 277

Query: 681 ---------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                              V     +    ++  L +++ +  W A   +    E     
Sbjct: 278 VEIKDVIDRAAVAGDPCGTVEHWAPSPADGERNPLRDNVIEAVWPADPLAVRREEVERGA 337

Query: 726 ----------REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                            +         L +     I  P    P  +       L    +
Sbjct: 338 TLVRRALAAGPGRPCADVDGWAADVDALLAERARLIEPPVRELPGQLSVSSLVGLARDPA 397

Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLEN 834
                 R    H+L       P     N   S+  K        +  +L  +    + ++
Sbjct: 398 GTAQRLR----HRLPSR--PDPHALLGNAFHSWVQKFYGAECLFDLGDLPGAADSDVGDS 451

Query: 835 PMMTTAMSC------DSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHH 887
             +    +        + S V+V      P  + ++ GRID +         + ++KT  
Sbjct: 452 AELAALQAAFTESPWAARSPVAVEVPFEMPIGETLVRGRIDAVFADPDGGATVVDWKTGE 511

Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYP--NKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
                          QL++Y             S+     YV      +  +       A
Sbjct: 512 PPHGAEALRQAA--VQLAVYRMAWAALAGVAESSVRTAFYYVRAGTTVVPDELPSAAELA 569

Query: 946 EIS 948
            + 
Sbjct: 570 GLL 572


>gi|225020701|ref|ZP_03709893.1| hypothetical protein CORMATOL_00708 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946647|gb|EEG27856.1| hypothetical protein CORMATOL_00708 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 1079

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 121/977 (12%), Positives = 252/977 (25%), Gaps = 154/977 (15%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R   S  +S   + + +  L +  +  +     L + TG        + LQ  S+    
Sbjct: 111 ARVATSHYKSAGTMVRSVHSLAFALLRRMR-DEKLRLITGAEQDAVIRELLQGHSELTGE 169

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            ++               +  I+     +    L++ L ++ +    +          + 
Sbjct: 170 GQQEQGPQVPITIWPEECRDGIVMVGFARG---LRDFLLRTVER--GLGPEDLERLGEEH 224

Query: 123 TLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                  A      YE+         L   +L+    +     DV   I        + +
Sbjct: 225 HRPMWVAAGKFLREYEQVMSLGGTHSLSASELVSMALE----HDVPPEI------SYSTV 274

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++D+ Q       E++    +                  GD  QS++ F GA P+     
Sbjct: 275 IVDDAQHLDPKSAELVARFIDQANFA----------VIAGDPDQSVFRFRGARPQ----- 319

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                            + L  S+R                                  +
Sbjct: 320 -------FLQHHPVDHELRLHTSYR--------------------------------VQA 340

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN--MIG 358
           R G  G                  +        D   ++ +  + +  +   I    +  
Sbjct: 341 RPGAPGVHFHRADSTGNMFEFVADRIRRARLIDDVQWRDIAVVVRSVGMITPIRRALLAA 400

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
              +  +    V+  + I+  +               L+      + G D   L   L  
Sbjct: 401 GVPVHIDPTDIVLSQQRIVSALILAVRAVHHGLTLAELEELALGPIGGADAVTLRRLLRG 460

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
              + L R         +     ++P    +   +  +     E E     + +      
Sbjct: 461 LRQVELRR-------TGAVADAFQTP----TRRSLEVLSELVLEPEPDPGLVAEVEQVLT 509

Query: 479 SKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFIS------RFGNEVIDVLD- 530
            + Q ++  I ++I    Q  S  +    I  A    +   +        G++    LD 
Sbjct: 510 DREQDILGRIRQVIAAGRQGGSVEEVLWEIWSATNLDKHLSAVSMRGGAAGSQADRDLDA 569

Query: 531 --EFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLES 585
                +      E+   S++   I+ +E+               + V I+T H   G E 
Sbjct: 570 VMALFDAAGDWVERRPNSTIDAFITHIEEQELPTGVRDRRLVVPDAVNIVTAHATSGQEW 629

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V +       +                D             + I              
Sbjct: 630 HTVIICGVQEDSWPSLSETGTLFGQEELVDL----------IDDGIAPGTTIARVTEQLR 679

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKK-SNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           E  RL ++  +RA++ LII    +    +     R   D +      D    + ++    
Sbjct: 680 EERRLFHMATSRATNTLIITAVDDPDAAEPQEPSRFVRDYMQPDSPEDPWEPQERVVGEQ 739

Query: 705 N---------------KDEWIAYEWSTHHPENTPLEREETIKQLM---------DEQKIP 740
                                       +P+ T   R +  +QL                
Sbjct: 740 QIDVDNPLTYTRLLSAPAIVAELRRVVTNPDETQRARNQAARQLARLAEAGVPGAHPDQW 799

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD-------NQTFNRGLIIHKLLQVI 793
             +  P          L+PS I+      L + +S             RG ++H   + +
Sbjct: 800 WGIAGPSTTRSLPVSSLSPSRIEAGMVCPLRATMSRIFTEEELAFPLLRGRLLHAFAEAV 859

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-----PMMTTAMSCDSYSE 848
               +            +     P       L +   +L+                   E
Sbjct: 860 ALNVDSDVARLKIMDAYQEILAAPTWLRSYRLDTWRTVLDRTKMWIETHRHIF-EQVGVE 918

Query: 849 VSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           V     I    + + + GRID++  +   +  I ++K+  + P   E     H  QL  Y
Sbjct: 919 VEAEVTIA---EGMKLRGRIDRLEKTMDGDYHIVDFKSGTNSPS--EKTIADH-IQLLTY 972

Query: 908 EKIL-KDSYPNKSLVCL 923
           + IL   ++    +   
Sbjct: 973 QLILHHGAFDGTKIRTA 989


>gi|260753941|ref|YP_003226834.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258553304|gb|ACV76250.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 1047

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 93/676 (13%), Positives = 172/676 (25%), Gaps = 180/676 (26%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G    ++  L  +    +    +      +          +  + + L   +++  I   
Sbjct: 499  GPGSGKTKMLTQRIAHLIQEKAIPAEKCLLLTFTRRATDELKARVKQLLPETESPPIIHS 558

Query: 66   FSLLSSFFLTQKFT---PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            F  L+   L +         +    +         E    S     +  +RF+  K    
Sbjct: 559  FHSLALDMLKKDSKAFGLAADFRIVDPQSLKKAFMEMSNLSSKRADEALERFSLLKRSGE 618

Query: 123  TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                    + L    E  K+ N  LDF+DL+I   + L+     A ++ K     + + +
Sbjct: 619  VGDLEE--EILRQSLENLKQDNHWLDFDDLLIKVVNGLENN---ASLQEKWATAFSFLSV 673

Query: 183  DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
            DE QD  + Q+ ++  LT               L  +GD  Q+IY F GA+ +   R ++
Sbjct: 674  DEFQDIDIWQYRLVWLLTG----------RNTQLTVIGDPDQAIYHFRGADSECFTRLQQ 723

Query: 243  INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
               +             L  ++RS ADI+   +++    +                    
Sbjct: 724  DFPEIV--------CRRLNRNYRSMADIVAAANRIMPDNKG------------------- 756

Query: 303  GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT--- 359
                              +    +       D   +       AR +A  I  ++G    
Sbjct: 757  ---------------QALRGQGDKILLYPASDEADE-------ARFVAQKIEELMGGHDM 794

Query: 360  -----DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                     +  ++     +D  VL R                N   I         +T 
Sbjct: 795  LTAQNGKNTAKSQETAFGFRDFAVLYRHNFQAKAFEKAF----NQAGIPFRKTVPIPITR 850

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
            HLA+    A    I     +     ++                  + E   +    ++ A
Sbjct: 851  HLAV---KAFIEKIEQSPQETLQDRLIV-----LKNIATELAQENQGEEAVLSPADREQA 902

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                         +  +   +   S   F   I                           
Sbjct: 903  YSW----------LKIIAEKSGQQSHTFFLEQI--------------------------- 925

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                                               + V +MT+H +KGLE   VF+    
Sbjct: 926  --------------------ALANEVDFHD--QRGDRVSLMTMHASKGLEFSAVFVTGLE 963

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             + F+  H                                           E  RL YV 
Sbjct: 964  EENFNLHHQLDNPT----------------------------------EIAEEKRLFYVA 989

Query: 655  MTRASDQLIICKHSNT 670
            +TRA D L +      
Sbjct: 990  LTRARDYLFLSYAKKR 1005


>gi|295836621|ref|ZP_06823554.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
 gi|197699607|gb|EDY46540.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
          Length = 741

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 89/624 (14%), Positives = 163/624 (26%), Gaps = 160/624 (25%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLD 148
             +  DL   ++ ++       D          T     L    + A YE  K+ +  +D
Sbjct: 145 RTELRDLTGDIEWAKATQTLPDDFAEAAATAGRTTHRDALETARVYAQYEALKRGSGRID 204

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           FED+++ T  +L+       I  ++  +  H  +DE QD S +Q  ++     +      
Sbjct: 205 FEDVLLLTIAILQD---REDIARQVRSQYRHFTVDEYQDVSPLQQRLLDLWLGE------ 255

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                  +  VGD  Q+IYSF GA P+ +L                 +++ L   +RST 
Sbjct: 256 ----REDVCVVGDASQTIYSFTGATPEHLLDF--------PARHPGATVVRLVRDYRSTP 303

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            I+ + + + S           +   +   + R                           
Sbjct: 304 QIVHLANNLLSHATG-----PAARQRLELVAQRPPGPVP--------------------- 337

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                    + +     A  IA+ I  ++             + A  I VL R    + L
Sbjct: 338 ------ESTEYADEVAEAEDIAHRIRTLVAEG----------LPAAQIAVLFRTNGQSNL 381

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                     D  +           D   I+  ++  R         +    L       
Sbjct: 382 YEQAL----GDAGVPYRLRGAEAFFDRPEIRSAVSAVRAAAH---SGANDTAL------- 427

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
             D    +  Q       +         G    +   + +  L+ +A             
Sbjct: 428 --DLDAPLPAQLRRVLGSHRLWSSEPPAGSGAVRERWESLAALVRLA------------- 472

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                                +E             ++L +L +EL          H+  
Sbjct: 473 ---------------------EELARA------RPGATLTDLAAEL---ADRQANQHAPT 502

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V + ++H AKGLE   VFLV     +    H +                        
Sbjct: 503 VDGVTLASLHAAKGLEWDAVFLVGLAEGMLPITHARTEEQTEEERR-------------- 548

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--SNTSNEKKSNQRTWYDMVY 686
                                L YVG+TRA  +L +                  + D + 
Sbjct: 549 ---------------------LFYVGITRARSRLHLSWALSRTPGGWGGRKPSRFLDALR 587

Query: 687 DSFHNDERVKKIKLTNSINKDEWI 710
                              +    
Sbjct: 588 TPGSARPASFADTPRLRTGQASRP 611


>gi|262183602|ref|ZP_06043023.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 683

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 86/650 (13%), Positives = 175/650 (26%), Gaps = 166/650 (25%)

Query: 130 AKYLNAHYEEAKKKNCV--LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              +   YE+ K    +  LDF+DL+++    ++     A +     ++    ++DE QD
Sbjct: 170 VAEVFRRYEDMKATPDLMYLDFDDLLMHIAGAIENVPSVAEV---FREQYRTFVVDEYQD 226

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q  V+ +   +             L  VGD  Q+IYSF+GA P  +L   R   + 
Sbjct: 227 VTPLQQRVLEAWLGE----------RDDLTVVGDANQTIYSFNGASPDYLLNFSRTYPQ- 275

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++++L   +RST  +  + ++V S                            
Sbjct: 276 -------ATVVKLQRDYRSTPQVTDLANEVISKASGR------------------AAGTR 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           ++L        +                     S  I A+ +A  +  ++          
Sbjct: 311 LELQGMREPGPEPTFK--------------AYESEEIEAKEVAGQVLTLLNQG------- 349

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              ++A +I +L R    +            D  +               I + + +   
Sbjct: 350 ---VKASEIAILYRINAQSEQFEQAL----ADAGVVYQVRGGEGFFRRPEILEAIRVLIA 402

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
              ++D  +    +                          E          ++ +   + 
Sbjct: 403 ATRRDDLPNDPVAVA--------------------RAAFVELGLSATEPQGAQARERWQS 442

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +  L          D    I+   +G                                 L
Sbjct: 443 LTAL---------VDLIAQIVEDHEGI-------------------------------DL 462

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             ++ EL +               V + T+H AKGLE   VFLV    ++    H  K  
Sbjct: 463 PGVLGELHRRSENKHNPTMEG---VTLATIHAAKGLEWDAVFLVGLTEKLLPINHAIKSG 519

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                                EE  RL YVG+TRA + L +   
Sbjct: 520 ---------------------------------DEHVEEERRLFYVGITRAREHLALSWA 546

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
              +   ++++      +       E  +         +    + + S+   +       
Sbjct: 547 LAKTTGSRASRE-RTRFLDGVVPGIEESQSSNRRYRPRRCRVCSGQLSSPAEKVLGRHEW 605

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
              +   D     +   + +  D   P  +  S    +  +         
Sbjct: 606 CEYEGDEDVFNALRAWRASVAKDSQVPAYVVFSDATLQAISEALPANEAE 655


>gi|241761575|ref|ZP_04759662.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373883|gb|EER63416.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 1047

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 90/638 (14%), Positives = 155/638 (24%), Gaps = 183/638 (28%)

Query: 47   LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI------NKKSPDLKEKL 100
             +    ++Q               S  L       K                     E  
Sbjct: 537  DELKARVKQLLPETESPPIIHSFHSLALDMLKKDSKAFGLAADFRIVDPQSLKKAFMEMS 596

Query: 101  KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
              S     +  +RF+  K            + L    E  K+ N  LDF+DL+I   + L
Sbjct: 597  NLSSKRADEALERFSLLKKSGEVGDLEE--EILRQSLENLKQDNHWLDFDDLLIKVVNGL 654

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +     A +R K     + + +DE QD  + Q+ ++  LT               L  +G
Sbjct: 655  ENN---ASLREKWATAFSFLSVDEFQDIDIWQYRLVWLLTG----------RNTQLTVIG 701

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            D  Q+IY F GA+ +   R ++   +             L  ++RS ADI+   +++   
Sbjct: 702  DPDQAIYHFRGADSECFTRLQQDFPEIV--------CRRLNRNYRSMADIVAAANRIMPE 753

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             +                                      +    +       D   +  
Sbjct: 754  NKG----------------------------------QALRGQGDKILLYLASDEADE-- 777

Query: 341  SASILARRIAYTISNMIGT--------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                 AR +   I  ++G             +  ++     +D  VL R           
Sbjct: 778  -----ARFVVQKIEELMGGHDMLTAQNGKNTAKSQETAFGFRDFSVLYRHNFQAKAFEKA 832

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                 N   I         +T HLA+    A    I     +     ++           
Sbjct: 833  F----NQAGIPFRKTAPIPITCHLAV---KAFIEKIEQSPQETLQDRLIV-----LKNIT 880

Query: 453  IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                   + E   +    ++ A             +  +   +   S   F   I     
Sbjct: 881  TELAQENQGEEAVLSPADREQAYSW----------LKIIAEKSGQQSHTFFLEQI----- 925

Query: 513  GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
                                                                     + V
Sbjct: 926  ------------------------------------------ALANEVDFHD--QRGDRV 941

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
             +MT+H +KGLE   VF+     + F+  H                              
Sbjct: 942  SLMTMHASKGLEFSAVFVTGLEEENFNLHHQPDNPT------------------------ 977

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                         E  RL YV +TRA D L +      
Sbjct: 978  ----------EIAEEKRLFYVALTRARDYLFLSYAKKR 1005


>gi|320161381|ref|YP_004174605.1| putative ATP-dependent DNA helicase [Anaerolinea thermophila UNI-1]
 gi|319995234|dbj|BAJ64005.1| putative ATP-dependent DNA helicase [Anaerolinea thermophila UNI-1]
          Length = 751

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 91/596 (15%), Positives = 176/596 (29%), Gaps = 88/596 (14%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                     L    +A  L   Y++A +    +DF+DLI     +L+K +V   +  ++
Sbjct: 186 REELDRLPVPLPLAEVACELYEEYQKALQYRVAVDFDDLIYLAWFILEKDEV---LLEQL 242

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY-SFHGA 232
                +IL DE QD+S +Q E+++ L            SP     VGD  Q+IY +F  A
Sbjct: 243 RYRWPYILEDEAQDSSRLQEEILKKLAG----------SPGNWVRVGDPNQAIYETFTTA 292

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P+ ++  ++                ELP S RS+  I+ + + +    +          
Sbjct: 293 NPEYLISFRKQ---------PGVIARELPESGRSSPSIIRLANLLICWSQGLDEEDALKN 343

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                                +         P             +          +  +
Sbjct: 344 GLA---------------LPLIQPTSQEDPKPNPPDVPQGVTLYMKALEDRKEFELVQQS 388

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +   +  +             + + VLV + +    I        N +KI VV       
Sbjct: 389 LQRWLADEKNRD---------RTVAVLVPRNQRAMDIVEEL----NKHKIPVVDTLLKTT 435

Query: 413 TD-HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR----------- 460
           T    A + L  +  ++ S +  +    + K     FS     K    R           
Sbjct: 436 TQTRSAARMLKKVLEWLASPDSAVKLSDLYKVWRTAFSSSADEKPLMDRVAKWIHRQMPL 495

Query: 461 --------HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                    E     E +++     + +     + +     +A           +     
Sbjct: 496 EKWAFPLPGEDVLESEQLRQSDPALVEECVRFRELLRRW-SMAVVLPVDQLILTLAQDLF 554

Query: 513 GRQQFISRFGNEVIDVLDEFLN-----FTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                ++         LD   N                 +Q     +      +      
Sbjct: 555 TEPADLAVAHKLAGA-LDILKNMNPDWQLKDYVDELDKIVQNERRFVGFSKDDLNFNPDD 613

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI-----PIWI 622
               V + T+H AKGLE   V+L+   +  F     +  +I  +      +      +  
Sbjct: 614 YKGRVVVATMHKAKGLEWDRVYLLSVNNYDFPAGDPEDTYIAENWFIRNHLNLSAELLEQ 673

Query: 623 PQSKSRNNIVSDLIK-----HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            +    ++      +       ++    E  RLLYVG+TRA  +LI+  ++     
Sbjct: 674 LRILFSHDEYEWYREGAATLRARRDYVRERLRLLYVGITRARQELIVTWNTGRKGR 729


>gi|319442807|ref|ZP_07991963.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile
           DSM 44702]
          Length = 710

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 103/748 (13%), Positives = 196/748 (26%), Gaps = 158/748 (21%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
               ++ +    + ++              L+        +  + LL S F       + 
Sbjct: 71  RAAAELRERLTMMGVARVQAKTFHAAARGQLRYFWPRFVGDTPWQLLDSKFPFVARACRA 130

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-TLAKYLNAHYEEAK 141
           N           DL  +++ ++   I   D        +            +   YE +K
Sbjct: 131 N-GVATDKTTLSDLLGEIEWAKSSLIAPEDYPAHIGPDRRDCPVAPEQFVRIFEGYENSK 189

Query: 142 -KKNCV-LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
                V LDF+DL+ +    ++       +  +        ++DE QD + +Q  ++ + 
Sbjct: 190 VTGEGVYLDFDDLLQSMAGAIEADPG---VADEFRSRYRTFVVDEYQDVTPLQQRLLDAW 246

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             D             L  VGD  Q+IYSF+GA P+ +LR      +         + + 
Sbjct: 247 LGD----------RDDLTVVGDANQTIYSFNGATPEHLLRFSSRYPE--------ATTVR 288

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L   +RST  ++ + +KV                              ++L  Q      
Sbjct: 289 LFRDYRSTPQVVDLANKVIGRATGR------------------AAGTRLELEGQRAPGPA 330

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
            +                + S  +  A  +A  IS +I +           +   +I VL
Sbjct: 331 PEF--------------TEYSDEAAEATGVAERISALIASG----------VSPSEIAVL 366

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    +  + +          IS              I                   V 
Sbjct: 367 YRINAQSAALEYALDA----AGISYQVKGGEGFFQRPEI----------------RQGVN 406

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            L       S  D       R   E +   ++                           +
Sbjct: 407 ALTDAARRLSRRDPGAEDQPRPTPEQLVNQVRAALVPVG-------------------LT 447

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
           P +                          L   ++        +     ++ + L     
Sbjct: 448 PTEP--------------TGAQDRARWQSLGALVDLAEELSTATPG--LDMSNLLGILRE 491

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             +  +      V + ++H AKGLE   VFL+         +H                 
Sbjct: 492 RAQSKNPPKVEGVTLASIHAAKGLEWDAVFLIGLVDGTVPIRH----------------- 534

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---SNTSNEKKS 676
                          L     +   EE  RLLYVG+TRA + L +             + 
Sbjct: 535 --------------ALKGTHSEDAIEEERRLLYVGVTRAREVLELSWAQARQPGGKASRR 580

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
             R    +V     +              K+           PE   L R +   +  D+
Sbjct: 581 RTRFLDGLVPWEKADAASGTGKTSVKGAPKNACAVCGARLTTPEQRILGRCDAHAEDGDQ 640

Query: 737 QKIPK--KLFSPIKNDINEPYILNPSTI 762
             + +     + +  + + P  +  S  
Sbjct: 641 VLVTELRSWRTTLAKERDVPAYVVMSDA 668


>gi|258517042|ref|YP_003193264.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780747|gb|ACV64641.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
          Length = 748

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 111/658 (16%), Positives = 204/658 (31%), Gaps = 47/658 (7%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ-TQCIEERFSLLSSFFLTQKFTPQ 81
           L    ++ + +     + +G  TIL++A+  Q   + T         +    L       
Sbjct: 88  LHSLALTILKESPERLLISGEMTILEQAEQFQLLREVTHRWISGNRNVWEAALETGKQEN 147

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K    ++   K+ D  + +           +    Y    +  + L  A      Y +  
Sbjct: 148 KEKYLEKWQAKTLDFFKNMISYFKCLGLTAEEMQGYLPALADESPLRWAIEAYNQYRDRL 207

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
               V DF+DLI N   LLK       +  ++ +  ++I  DE QD++L+Q +++  L  
Sbjct: 208 FHLGVQDFDDLIYNARTLLKTDTA---VLKRLQKRWSYIFEDEAQDSNLLQEQILLLLAG 264

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                K   +    L  VGD  QS+   F  A+P       R          ++     L
Sbjct: 265 GSPEDKKGITFTGNLVRVGDSNQSVMGTFTAADPALFRSFCR---------SREIKNQPL 315

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             S RS+ +I+ + + + S       +        +              + + V   D 
Sbjct: 316 LYSSRSSQNIIDLANHLVSWVATEHPVQACRQALEKQ-------------YIKPVPAADP 362

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
             NPQ E +T                      I+         +  K   I A D  +L+
Sbjct: 363 CPNPQPERYTIGSIKSKTNREE-------ISKIAGHASRYIRENKEKTVAILAPDKYILL 415

Query: 381 RKRKDTPLITFLTRFL-----KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
              +   L+    R +     +  +    +G     L +      L+      L  E   
Sbjct: 416 EAAEQLTLLNAPFRQIAGGQSERRHTARALGAVIEYLAEPHKGSKLVKALSSTLLPELAG 475

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                +K  L     +++        +               ++  + V  ++       
Sbjct: 476 EDFPYIKEFLAACRLEELLYPEGAGKQELPEEAATSLLWPSCLAALKRVKTWLTA--SRI 533

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
              S   F    LG +        R   ++ ++L     + L +      SL+ +     
Sbjct: 534 PPESLLLFLAADLGLENEELAIAQRIALQIKELLRSNPAWRLADLAAELQSLESIFDHF- 592

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                 +  ++     + + T H AKGLE   VFL    S  F  +        P   + 
Sbjct: 593 TDMVYDRHGYTPEPGVISLATYHKAKGLEWDTVFLTSLTSDSFPSQPDDYFRDHPGYLNK 652

Query: 616 PGIPIWIPQSKSRNNIVS-----DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                          ++      D  +  KK T  E  RLLYVG+TRA + L+     
Sbjct: 653 HMANPGALAKAELKALIEPGKIIDPQEEAKKETISERLRLLYVGITRARENLLFSYPE 710


>gi|119715752|ref|YP_922717.1| UvrD/REP helicase [Nocardioides sp. JS614]
 gi|119536413|gb|ABL81030.1| ATP-dependent DNA helicase, Rep family [Nocardioides sp. JS614]
          Length = 688

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 94/743 (12%), Positives = 189/743 (25%), Gaps = 168/743 (22%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
           +A+T   A+  Q      +   +   T   +    + T    ++    +  L+    E  
Sbjct: 84  QARTFHSAALRQLRYFWPTSYGTELPTLIESKIGLLATAARRQRLNADQALLRDLASEVE 143

Query: 109 ---------KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
                             +    +         +   YEE K+    +D ED+++ T  L
Sbjct: 144 WAKVSNVHPDEYPIVAAQRGRSVSGHDPDTVARVFGSYEEVKRGQGRMDMEDVLLLTAGL 203

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L + +    +  ++ ++    ++DE QD S IQ  ++                   L  V
Sbjct: 204 LAEDE---RVAAQVRRQYKWFVVDEFQDVSPIQSALLDLWLG----------GRDELCVV 250

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF GA             +         + IEL  ++RST +++   + +  
Sbjct: 251 GDPAQTIYSFAGANAA--------YLRDFPTRHPGTTSIELVRNYRSTPEVVGAANAL-- 300

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                  L   ++  ++ R+ R                          ++T   D + + 
Sbjct: 301 -------LGGSASAGVQLRAQRPSGP--------------------PVTYTPRPDEVAE- 332

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A  +A  +  +                  ++ VL R    +             
Sbjct: 333 ------AESVAAQVLRLRDAGRSL----------GEVAVLFRINAQSEAFEEALAA---- 372

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +  V        D   +++ +   R         S      +   +    D+ +    
Sbjct: 373 RGLPYVVRGAARFFDRPEVREAVTRLRGAA-----RSGEAARAAESGDGDWVDVVRAILA 427

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                      +         +Q ++    +                             
Sbjct: 428 GMGWSPEAPTTRGQTRDRWESWQALVDQAAQF---------------------------- 459

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                                    + L   +  L++         +   + V + T H 
Sbjct: 460 ---------------AAESARDGEAADLDAFVDHLDRRAAEQHAPVA---DGVTLATFHA 501

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFL                                            +    
Sbjct: 502 AKGLEWDSVFLCGLQDGTLP-----------------------------------ITYAD 526

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +  EE  RLLYVG+TRA   L +    + +   +++ R     +     +D R  + +
Sbjct: 527 TPAAVEEERRLLYVGITRARVDLTLSWALSRNPGGRAS-RKPSRFLEPLLPDDARATRER 585

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                  +            E     R        DE+   +      +    E      
Sbjct: 586 PRGRKVANCRECGRPLATGQE-LKRGRCADCPASYDEELFERLREWRRERAGEESVPAFV 644

Query: 760 STIDTKGKTNLESLLSDNQTFNR 782
              D   +   E      +   R
Sbjct: 645 VFTDATLQLIAEHKPRTPEALLR 667


>gi|83643486|ref|YP_431921.1| superfamily I DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83631529|gb|ABC27496.1| Superfamily I DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 776

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 95/755 (12%), Positives = 206/755 (27%), Gaps = 130/755 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E +E   + +    Y +  ++  Y ++ +      I +              E  F 
Sbjct: 83  AAKEDFERKLRQVAGTHYREQPEVRTYHAMGLRLYQRFIREGVLPAFVGQVLSDQEIHFQ 142

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L          + Q ++  +   K+  +L  +L         +      ++  +      
Sbjct: 143 LWQLLRRHAPESHQDSV--KRNKKEYIELASRLLDM--SKTSLLPLQTVFEQLEYRKEL- 197

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   +E  +K +  + F D++      L++      +   +  +++ IL+DE QD
Sbjct: 198 AFLIEVVNSFEAWRKSHSRISFADMLYEPVKCLQESPDLVKL---VADKMDVILVDEYQD 254

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ IQ  ++R +            +   +  VGD  Q+IY F GA+P+ +L        R
Sbjct: 255 TNEIQHLLLRYIAG----------ARARVTVVGDPDQTIYEFRGAQPEFIL-------NR 297

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +      L  +FR    +  + + + +     + L   S          + Q G 
Sbjct: 298 FAEEFESPREFTLSYTFRYGHKVALLANHLITHNHGRKDLLCRSHKGTPSTDVNVLQGG- 356

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                                  R++   +  ++          
Sbjct: 357 ------------------------------------DETRQLVLQLGRLLNGGG------ 374

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR- 426
               + +DI +L R       +          ++I    +       +  +  +  +   
Sbjct: 375 ----EPEDIAILFRVWSQAVPVELALLA----HRIPYRIDGDKGALANREVMHIQYVLEM 426

Query: 427 ------FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY---------EYIQ 471
                  +   +       +L+ P     +D + ++     + +  +         + + 
Sbjct: 427 ASGRLGMLEENKRAEVLAGLLRFPHVGLKDDTLRELAHILAQHDAHWGDQLLEWIPDSLH 486

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
                 + +       + ++   A            L              +E I+ +  
Sbjct: 487 ALQKRKLKRTAQAWSLLPKMKGSAADIVRFYIDDTELFKTLEELALTHDTADERINNV-- 544

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            L         +  SL+ L    E                V + T+H  KGLE PVV L+
Sbjct: 545 -LGVEHYLATLNLPSLETLQHFDELRRLAS---AQKQQGGVTLSTMHRTKGLEWPVVMLI 600

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
               Q   +       I+                                   +   RLL
Sbjct: 601 GLNEQYLPYSMRGGEDIVDH--------------------------------LQAERRLL 628

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YV MTRA + L +   +       S        V ++  +        L      D   +
Sbjct: 629 YVAMTRAKEALYLFTPTLNDKTALSKDDKPSRFVKEACMDVSMAVGEFLDQRKQTDANDS 688

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
             + +         R      +  EQ        P
Sbjct: 689 AHYESGQRLTPIATRYLDWHNVNYEQPAQAAASEP 723


>gi|323159985|gb|EFZ45950.1| exodeoxyribonuclease V beta chain domain protein [Escherichia coli
           E128010]
          Length = 625

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 76/598 (12%), Positives = 179/598 (29%), Gaps = 95/598 (15%)

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +LVR R++   +      L+     SV  ++R  + + L  ++++ L + +++ E + + 
Sbjct: 1   MLVRSRQEAAQVRDALTLLEIP---SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 57

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
              L + +   +  DI  +           E+           ++ + +    +  +   
Sbjct: 58  RSALATSMMGLNALDIETLNND--------EHAWDAVVEEFDGYRQIWRKRGVMPMLRAL 109

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISEL 554
            S  +    +L    G ++            + E L      L +E      L + I E 
Sbjct: 110 MSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLESEHALVRWLSQHILEP 163

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +    + +    ++ + V+I+T+H +KGLE P+V+L    +     +             
Sbjct: 164 DSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDR------- 216

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSN 672
                    ++    N   + +   +     E  RLLYV +TR+     L +        
Sbjct: 217 ------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRG 270

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER------ 726
           +KK +       +       E      L   I         W T    +    +      
Sbjct: 271 DKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDKQPWQVNDALT 330

Query: 727 EETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTIDTKGKTNLESLLSD 776
            E   + +          +              D+     ++ + + +  +    +    
Sbjct: 331 AELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVVSVVEEPTLTPHQF 390

Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
            +  + G  +H L + +         N++          + ++    L   IT +L+ P+
Sbjct: 391 PRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPVLTEWITAVLQAPL 447

Query: 837 ------MTTAMSCDSYSEVSVSGKINCPK--------------------------KDIII 864
                 +      D   E+     I+ P                              ++
Sbjct: 448 NETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAGCPPLEFMQVRGML 507

Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
            G ID +   +   ++ +YK++                    + +  Q  +Y   L  
Sbjct: 508 KGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHR 565


>gi|325675761|ref|ZP_08155445.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
 gi|325553732|gb|EGD23410.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707]
          Length = 723

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 92/660 (13%), Positives = 180/660 (27%), Gaps = 171/660 (25%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFF-LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
              + L+        +  + LL   F L  +   +  + T    +   DL  +++ ++  
Sbjct: 105 AALRQLRYFWPQVIGDTEWQLLDRKFALVGQAASRVGLST--STESIRDLASEIEWAKGS 162

Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII-------NTND 158
            +   D      +  +   A       + + YEE K +N    ++ +++       +T  
Sbjct: 163 LVAPEDYPAVAARARRDIPADAAKVAAVYSGYEELKARN----YDGMLLDFDDLLLHTAA 218

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            L++      +  +        ++DE QD + +Q  V+ +   D             L  
Sbjct: 219 ALEEHSA---VAEEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGD----------RDDLTV 265

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  Q+IYSF GA PK +L   R             +++ L   +RST +++++ ++V 
Sbjct: 266 VGDANQTIYSFTGATPKYLLDFSRRFP--------DATVVRLERDYRSTPEVVSLANRVI 317

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                       + T ++    R                                    +
Sbjct: 318 GEARGR-----IAGTRLQLIGQRPSGPEPT---------------------------FAE 345

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  +A  I  +I             ++  +I VL R    + +          
Sbjct: 346 YDDEPAEAAAVARQIKKLIEQG----------VEPAEIAVLYRINAQSEVHEQALTE--- 392

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I               ++  +   R +  ++D          P    +   +  +  
Sbjct: 393 -AGIPYQVRGGEGFFTRQEVRQAINALRQVAGRDD---------LPEGADTGQALVTLVR 442

Query: 459 Q--RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                   T  E     A         ++    EL+      +                 
Sbjct: 443 AVLVPLGLTDVEPTGAQARERWGSLTALVSLTEELLAHDPHLTLGGL------------- 489

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                                R+E      +Q                       V + +
Sbjct: 490 ---------------LAELAARSEARHPPVVQG----------------------VTLAS 512

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE   VFLV          H+      P   D                      
Sbjct: 513 LHAAKGLEWDAVFLVGLTEGTLPIAHVLGDSNSPGDQDG--------------------- 551

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                   EE  RLLYVG+TR  + L +      +   + ++R    +      +    +
Sbjct: 552 -------IEEERRLLYVGVTRPREHLALSWALARNEGGRKSRRRSRFLTNVIPDDSPASR 604


>gi|315125768|ref|YP_004067771.1| UvrD family helicase [Pseudoalteromonas sp. SM9913]
 gi|315014282|gb|ADT67620.1| UvrD family helicase [Pseudoalteromonas sp. SM9913]
          Length = 638

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 94/665 (14%), Positives = 196/665 (29%), Gaps = 118/665 (17%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  E +   +       VS I+      +E+   TI   +  L    + Q   E F 
Sbjct: 59  AAQEMQERLADFVGVEERTWVSTIHSVAQSIIESYGHTIGLSSD-LHIYERDQDRMELFL 117

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                               E  K++  +++ +    +   ++    +  ++        
Sbjct: 118 QSLRDSNINIDEYLNINDPAEKRKRNQVMQDYMDAFAEIKRELLTERDEIEVRFPNEPRF 177

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+EA   +  +DF D++     +L K    + I         H+ +DE QD
Sbjct: 178 Y---DIYQDYQEALLNSGGIDFNDILFLAYKILNKH---SNIARTYQVMYKHVCVDEAQD 231

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            +  Q+E+I+    +           +++  VGD  Q IY F+G+        ++     
Sbjct: 232 LNKAQYELIKVFCGE---------RIKSILMVGDPNQMIYGFNGS----KDYFEKDFLND 278

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 K     L  ++RS+ +++ + + V                 I H ++  G    
Sbjct: 279 F-----KPKTFTLRENYRSSKEVIKLAN-VIKPNSQ-----------INHEAAFNGYA-- 319

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                       +    +  + A  +   I +++     +    
Sbjct: 320 ---------------------------IIQPCFNEEVEANWLIRGIKSLLEAKEHYEIEG 352

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG--NDRFILTDHLAIKDLMALG 425
           +  I  + ++V+ R +     +    +   ++  I+      +R    D L  K L    
Sbjct: 353 E--ISLEKMVVIGRNK----FVFNKLKEKLDENNITYHFNKGERQTEPDSLFGKILDYAI 406

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R  L+ +D      +    L +  +          +   T  + ++  A         ++
Sbjct: 407 RLKLNPKD-----WIDGKKLCSLLKVQQPNEWNDNNLLLTWSQAVESSALPLAQVQAFLL 461

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGR--QQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           + IH++           F+  +          +   +   E++  + E   F  R     
Sbjct: 462 QEIHKIDDEQPNIR--KFYMALKDKLGEYSSAELTEKEQIELVISVQELDEFQKRWTTFK 519

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             SL   +          K   +     + + TVHT KGLE  +VFL+     VF     
Sbjct: 520 RRSLGVSLKSFRNAMTLGKLDSATQGKGLTLSTVHTMKGLEKDIVFLIGMCDGVFPD--- 576

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                            +        E     +V +TRA   L 
Sbjct: 577 --------------------------------YRATSPKDLNEEKNNAFVAVTRAKRWLY 604

Query: 664 ICKHS 668
           I    
Sbjct: 605 ISYPQ 609


>gi|99034067|ref|ZP_01314192.1| hypothetical protein Wendoof_01001018 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 289

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 104/312 (33%), Positives = 166/312 (53%), Gaps = 29/312 (9%)

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              + VVG D F + D++A++DL+AL  F+L Q +DL+    LKSPLFNF+EDD+F I  
Sbjct: 2   KANVPVVGRDYFRIMDYIAVQDLIALAEFLLLQANDLALANALKSPLFNFTEDDLFNIAY 61

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            R E  +++E IQ ++    S+       ++ LI++++  SP   FT IL    G+++F 
Sbjct: 62  DRKEH-SLWERIQDYSVVIYSE-------LNYLINLSRIESPLALFTHILRT--GKKKFA 111

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +R G E  +VLDEF+N  L+ E     SLQ  +  +++  P IK    +  N VRIMT+H
Sbjct: 112 ARLGLEYFEVLDEFMNLVLQFEN---PSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIH 168

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGL++P+VFLVDT +   + + I        + D   +P W  ++   N     + + 
Sbjct: 169 KSKGLQAPIVFLVDTNTVPRNSESI--------IFDGTEVPFWCGKNN--NAYCDQVKRE 218

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
            K     EY RLLYV +TRA D+L I        ++   + +WYD++       E+ ++ 
Sbjct: 219 KKLEDYNEYLRLLYVALTRAEDELYILS------KEPVQKGSWYDLITKYGEPYEKKQRD 272

Query: 699 KLTNSINKDEWI 710
                  K E +
Sbjct: 273 LQPIFKEKVEVL 284


>gi|84494604|ref|ZP_00993723.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
 gi|84384097|gb|EAP99977.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
          Length = 729

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 115/346 (33%), Gaps = 69/346 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK--YLNAHYEEAKKKNCVL 147
                DL  +++ ++   +      +  +        L L     + A YEE K +  V+
Sbjct: 138 RTGIRDLAAEVEWAKVSMLTAETYASAARAAGREAPGLDLTAMSRVLAGYEEVKAERGVI 197

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DFED+++    +L++ +    +   + ++    ++DE QD + +Q  ++           
Sbjct: 198 DFEDVLLVLVGILEENEA---VARAVREQYRSFVVDEYQDVNALQQRLLDLWLA------ 248

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                 + +  VGD  Q+IYSF GA P  +L  +            K   +EL  ++RST
Sbjct: 249 ----GRQDICVVGDPAQTIYSFTGASPVHLLGFR--------AKHPKAQQVELVRNYRST 296

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +I+ + + V                            G  +    VV +   +  P   
Sbjct: 297 PEIVGLANLVLR------------------------SPGGGRRSGSVVLEAQRESGPTPT 332

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
             +   D           A  +A  I+++I                 DI VL R    + 
Sbjct: 333 LVSHPDDPSE--------AAAVAGQIADLIAGGAA----------PADIAVLFRTNGQSE 374

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +         D  I  +            ++D + L R     +D
Sbjct: 375 NVESAL----ADRGIPYLVRGGERFFQRKEVRDAIVLMRGAARSDD 416



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 76/321 (23%), Gaps = 37/321 (11%)

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                       +           ++             S  D    +L      +   +
Sbjct: 381 ADRGIPYLVRGGERFFQRKEVRDAIVLMRGAARSDDGSVSLPDLVRDVLLGAGWSRDAPN 440

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
             G              L ++  +      + + + +    +   H+     V + ++H 
Sbjct: 441 AGGAARERWESLASLAALADDLAAADGEARMPAFVRELDERMASQHAPAVQGVTLASLHA 500

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFL+                                                
Sbjct: 501 AKGLEWGTVFLIGASDGYLPISM-----------------------------------AD 525

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RLLYVG+TRA D+L++      +   ++ +R    +   +    +  +   
Sbjct: 526 TPEAIEEERRLLYVGVTRARDRLVVSWSGARTPGARATRRPSRFLDGTASILGDGARSQP 585

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
              S       A                +       E+ + +    P   D      L  
Sbjct: 586 KRGSRVGGGAGAKTPKVARRSVCRTCGADL--STAAERTVGRCATCPATYDEALFERLRE 643

Query: 760 STIDTKGKTNLESLLSDNQTF 780
             + T     + + +      
Sbjct: 644 WRLATARGAAVPAYVVFTDAT 664


>gi|312140612|ref|YP_004007948.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
 gi|311889951|emb|CBH49268.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S]
          Length = 730

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 92/660 (13%), Positives = 180/660 (27%), Gaps = 171/660 (25%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFF-LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
              + L+        +  + LL   F L  +   +  + T    +   DL  +++ ++  
Sbjct: 112 AALRQLRYFWPQVIGDTEWQLLDRKFALVGQAASRVGLST--STESVRDLASEIEWAKGS 169

Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII-------NTND 158
            +   D      +  +   A       + + YEE K +N    ++ +++       +T  
Sbjct: 170 LVAPEDYPAVAARARRDIPADAAKVAAVYSGYEELKARN----YDGMLLDFDDLLLHTAA 225

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            L++      +  +        ++DE QD + +Q  V+ +   D             L  
Sbjct: 226 ALEEHSA---VAEEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGD----------RDDLTV 272

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  Q+IYSF GA PK +L   R             +++ L   +RST +++++ ++V 
Sbjct: 273 VGDANQTIYSFTGATPKYLLDFSRRFP--------DATVVRLERDYRSTPEVVSLANRVI 324

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                       + T ++    R                                    +
Sbjct: 325 GEARGR-----IAGTRLQLIGQRPSGPEPT---------------------------FAE 352

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  +A  I  +I             ++  +I VL R    + +          
Sbjct: 353 YDDEPAEAAAVARQIKKLIEQG----------VEPAEIAVLYRINAQSEVHEQALTE--- 399

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I               ++  +   R +  ++D          P    +   +  +  
Sbjct: 400 -AGIPYQVRGGEGFFTRQEVRQAINALRQVAGRDD---------LPEGADTGQALVTLVR 449

Query: 459 Q--RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                   T  E     A         ++    EL+      +                 
Sbjct: 450 AVLVPLGLTDVEPTGAQARERWGSLTALVSLTEELLAHDPHLTLGGL------------- 496

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                                R+E      +Q                       V + +
Sbjct: 497 ---------------LAELAARSEARHPPVVQG----------------------VTLAS 519

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H AKGLE   VFLV          H+      P   D                      
Sbjct: 520 LHAAKGLEWDAVFLVGLTEGTLPIAHVLGDSNSPGDQDG--------------------- 558

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                   EE  RLLYVG+TR  + L +      +   + ++R    +      +    +
Sbjct: 559 -------IEEERRLLYVGVTRPREHLALSWALARNEGGRKSRRRSRFLTNVIPDDSPASR 611


>gi|86605069|ref|YP_473832.1| UvrD/REP helicase domain-containing protein [Synechococcus sp.
           JA-3-3Ab]
 gi|86553611|gb|ABC98569.1| UvrD/REP helicase domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 706

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 90/595 (15%), Positives = 189/595 (31%), Gaps = 72/595 (12%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R     +  +T   L  A  + A Y+   ++   LD++DL     +L+++      +R +
Sbjct: 167 RLGPEAIPTTTQGYLGWAAPIYAAYQAELRRLGKLDYDDLGWQAVELIERDPA---LRQQ 223

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHG 231
           +    +++  DE QD+S +Q E++R L++              L  VGD  QSI   F  
Sbjct: 224 VQNWYDYLFEDEAQDSSPLQEELLRLLSQ----------RTGNLVRVGDPNQSIMGTFTT 273

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           AEP+      + N +           + L  S RS   IL + +++         +    
Sbjct: 274 AEPRLFRAFCQANPQ-----------VTLKESSRSAPQILELANRLVDWVNQKHPIPALR 322

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
           T             G                              P  S   ++ RR+  
Sbjct: 323 TALAPQHICPASAGGL----------------------------NPPASEGEVVFRRVVG 354

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
           +    +   T ++    +    + + +LV   +         R L  +  I ++   R  
Sbjct: 355 SPEQELQEVTRWALAAAQAFPDQTVAILVTTNELGGKALDYLRELGAEQVIDLL---RGN 411

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKS-------PLFNFSEDDIFKICTQRHETE 464
            +    +  L  +  ++            +         P        +  I     E  
Sbjct: 412 PSQRRVLLQLKGIIDWLAQPISSARLAAAVDHLADWAGIPRLELGP-MLDWIRASLPERL 470

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGN 523
              ++ +         +Q++ + +  L    +   SP      ++     R+      G 
Sbjct: 471 LFPQFGEAPTLPDSPSWQNLGRLLRILAGWLRAGRSPWPEVLNVIVQSLYRKPEELFVGC 530

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKG 582
            VID L++ L      +    +    +I +       +   A +     + + T+H AKG
Sbjct: 531 YVIDQLEQVLGSLPEVDWQEIAQELRVILDRRLNNLPSEIFAFNPEPGSITVTTLHRAKG 590

Query: 583 LESPVVFLVDTGSQVFSHKH------IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           LE   VF+    +  F          ++ +  +    +       + +            
Sbjct: 591 LEWDQVFIPQVSAYEFPTYSEERPVGLRFLEDVDMRAEALAQLRQLSRRSCWEQQADSAT 650

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           +        E  RLLYVG+TR+  +L +   S +   ++ +    + ++      
Sbjct: 651 EQAFLDLAAERLRLLYVGITRSKRRLTLSVSSQSRFGEEQSASLVFRVLSRPCEA 705


>gi|284033218|ref|YP_003383149.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
 gi|283812511|gb|ADB34350.1| UvrD/REP helicase [Kribbella flavida DSM 17836]
          Length = 707

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 68/512 (13%), Positives = 144/512 (28%), Gaps = 88/512 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
               ++  +      +               + S ++         +A+          +
Sbjct: 70  RVLAVTFTQRAAGEMRGRLAQLGADGVQARTFHSAALR--------QARFFWPKVYGSEL 121

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
                             +  + T  +   + ++         +   +R         +S
Sbjct: 122 PPIADRKFPLLTEAAGRCRVRVDTPALRDLAGEV------EWAKVSNVRPDDYARIAPRS 175

Query: 123 TLASLTL----AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             A           + A YE+ K +   +D ED+++    LL + +    +  +I ++  
Sbjct: 176 GRALAAFDPATIARIFAAYEDVKLERGRIDLEDVLLCAVALLAEDE---RVAAEIRRQYR 232

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
             ++DE QD S +Q  ++                   +  VGD  Q+IYS+ GA+P+ ++
Sbjct: 233 TFVVDEYQDVSPLQQSLLNLWLG----------GRDDVCVVGDPAQTIYSWAGADPENLV 282

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
           R          +     ++++L   +RST  I+ V +KV                     
Sbjct: 283 RF--------ASKHPNATVVKLVRDYRSTPQIVDVANKVLDA------------------ 316

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           +   G  G V L  Q+    +               +  + S     A  +A  I  +  
Sbjct: 317 TGSAGLPGRVTLRSQLEPGPEP--------------TYREYSDEVAEADAVARAIQRLKD 362

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T            +DI VL R    +          K    I  V        +   I
Sbjct: 363 GGTAL----------RDIAVLFRTNAQSENFEQALAERK----IPAVLKGAERFFERTEI 408

Query: 419 KDLMALGRF---ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
           +    L R         DDL            +S +        R   E++   +   ++
Sbjct: 409 RQAAMLLRGQVKAGDPGDDLEETVRGVLAGAGWSPEPPAGKGAVRDRWESLSALVTMTSD 468

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
              +  +  +  +   +              +
Sbjct: 469 FAAAHPEAGLADLMAELDRRASIQHAPLAEGV 500



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/376 (14%), Positives = 103/376 (27%), Gaps = 56/376 (14%)

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A TI +  G D               ++ LVR  + TP I  +   + +    S     R
Sbjct: 267 AQTIYSWAGADPENLVRFASKHPNATVVKLVRDYRSTPQIVDVANKVLDATG-SAGLPGR 325

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE-DDIFKICTQRHETETVYE 468
             L   L          +     +  +    ++      +   DI  +     ++E   +
Sbjct: 326 VTLRSQLEPGPEPTYREYSDEVAEADAVARAIQRLKDGGTALRDIAVLFRTNAQSENFEQ 385

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCS-----------PHDFFTLILGAKKGRQQF 517
            + +     + K         E+   A                 +    +L       + 
Sbjct: 386 ALAERKIPAVLKGAERFFERTEIRQAAMLLRGQVKAGDPGDDLEETVRGVLAGAGWSPEP 445

Query: 518 ISRFG--NEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRI 574
            +  G   +  + L   +  T         + L +L++EL++         +     V +
Sbjct: 446 PAGKGAVRDRWESLSALVTMTSDFAAAHPEAGLADLMAELDRRASIQHAPLAEG---VTL 502

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            T+HTAKGLE   VF+V                                           
Sbjct: 503 ATLHTAKGLEWECVFIVGAHEGTLP----------------------------------- 527

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHND 692
           +      +  EE  RL YVG+TRA  QL I      +     +     + D V       
Sbjct: 528 ISYAQTPAQVEEERRLFYVGVTRAKRQLFISWSTSRSPGGRGQRGPTRFLDPVGVRGATR 587

Query: 693 ERVKKIKLTNSINKDE 708
              +         ++ 
Sbjct: 588 PASEWQPSPGRTGRER 603


>gi|227513004|ref|ZP_03943053.1| possible ATP-dependent DNA helicase PcrA [Lactobacillus buchneri
           ATCC 11577]
 gi|227083761|gb|EEI19073.1| possible ATP-dependent DNA helicase PcrA [Lactobacillus buchneri
           ATCC 11577]
          Length = 786

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 85/613 (13%), Positives = 177/613 (28%), Gaps = 106/613 (17%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            +++ +       +  L   T    +   Y   K++N  +DF D+ I    LL + D   
Sbjct: 190 KQLKAQLGEVGEDEYDLDFYTDYLAVMTQYMILKRQNSFVDFNDMKILLRQLLDQPDHVR 249

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVI-RSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
               +I      +++DE QD   +QW+++ R L+++             L  +GD+ QSI
Sbjct: 250 SFH-QIMSRFKLVVMDEFQDIDNLQWDIMTRLLSQEALS---------RLIVIGDDDQSI 299

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YSF G+ PK           +            L  ++R+   IL+    +         
Sbjct: 300 YSFRGSNPK--------FILKFHGILPGAKTYRLSTNYRTGGQILSEAKPLIKHNYVRLA 351

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               +            + G V ++    +  D   +   +  +   D        ++L 
Sbjct: 352 KELKAFN---------EKKGQVHVYPLKTAGFDPNSDMFTKLVSQIRDPEIDNHQIAVLV 402

Query: 347 RRIAYT--ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
           R  +    +++ +    I+ N   R    +  L+         ++  L +    +     
Sbjct: 403 RYNSDRTLVADWLANQQIYVNINNRGAIFQHTLI-------YRILVNLMQAFWQNRFQPF 455

Query: 405 V-GNDRFILTD-HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                R   T     + ++      I S  D                    + +  QR E
Sbjct: 456 HEQATRIGFTTYRRHVTEIDKAAGGIDSLSD-------------YLEIATKYNLRHQRTE 502

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH-DFFTLILGAKKGRQQFISRF 521
            +  +  I           +   + + +        +     +  +L        ++++ 
Sbjct: 503 NQKRFAKIDTRVRMAFKIIKEQRQDVEKANSETSIGNVFMQIWNTVLELTATYFDYMTKN 562

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN------HNEVRIM 575
                D                   + +     +Q     +   + +       N+V+ +
Sbjct: 563 DFVSKDT----FKDMTTYLHTEIKQITDPDVWFDQEDQKRQLLEANSQKGVSLENDVQFL 618

Query: 576 TVHTAKGLESPVVFLVDTGSQVFS------HKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++H AKGLE   V+L     +         +             D     +   + K   
Sbjct: 619 SLHQAKGLEFKYVYLYGLSDKQLPVGTTIINDWFHPDISFEDFIDRWNDLVTRQRVKELT 678

Query: 630 NIVSDLIKHLKKST-------------------------------------QEEYNRLLY 652
            I+      + +                                        EE  RL+Y
Sbjct: 679 GILEAAFIDITEEVRKNKHIDLNHIEIEKCHDLDLDLLHNWYTAIRHYSQFIEEERRLIY 738

Query: 653 VGMTRASDQLIIC 665
           VGMTRA   L + 
Sbjct: 739 VGMTRAKTVLNVS 751


>gi|218458472|ref|ZP_03498563.1| probable ATP-dependent exonuclease V protein, nuclease and helicase
           domains [Rhizobium etli Kim 5]
          Length = 160

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 77/160 (48%)

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
           Q +  +P         +         P  E + L+ S+ +LL+   +   +   +  EVS
Sbjct: 1   QALPDIPPGGAARCGPALRRTGGPFCPEAERRKLVDSVLKLLDEKDLQPVLGEQARPEVS 60

Query: 851 VSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
           + G +    +   +SGRID++++    + I +YKT+   P   + IP+ H AQL+IY +I
Sbjct: 61  IMGTLTLDGRRYAVSGRIDRLAVLTDRVVILDYKTNRVPPASEDAIPFAHRAQLAIYREI 120

Query: 911 LKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
           L   YP K + C+L+Y     ++ + +  L  A A + TK
Sbjct: 121 LAPLYPGKRIDCMLVYTENASLYTLSERALGLALAGLKTK 160


>gi|269796037|ref|YP_003315492.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
 gi|269098222|gb|ACZ22658.1| DNA/RNA helicase, superfamily I [Sanguibacter keddieii DSM 10542]
          Length = 699

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 92/627 (14%), Positives = 175/627 (27%), Gaps = 82/627 (13%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A         Q +      +            + +          DL  +++ 
Sbjct: 108 ARTFHAAALRQLSFFWPQVVGGPPPRILEHKAPAVGEAARRLNLSVDRVAVRDLSSEVEW 167

Query: 103 SQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           ++   +   D             +         L   YEE K +  V+DFED+++   D+
Sbjct: 168 AKVSLVTAEDYERACVAKGRPAPAGFDHRTVARLITAYEEVKTERSVIDFEDVLLMLGDM 227

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L        I   + ++  H ++DE QD S +Q  V+     D           R L  V
Sbjct: 228 LASNHT---IAETVRRQYRHFVVDEYQDVSPLQQFVLDQWLGD----------RRELCVV 274

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF GA P  +L  ++              ++ L   +RST  ++ + +K+ +
Sbjct: 275 GDPSQTIYSFTGATPHHLLSFQK--------VHPDAQVVRLVRDYRSTPQVVGLANKLLA 326

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                +     S   +   + R                          ++T+Y D   + 
Sbjct: 327 TKGVRRS---GSHPALELIAQRPSGP--------------------PVAYTTYDDDESE- 362

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 AR IA  +  ++   T             +I VL R    +            D
Sbjct: 363 ------ARGIATKVGRLVAAGTA----------PSEIAVLYRTNAQSEGFE----AALAD 402

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGR-FILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
             I+ +            ++D + L R    S E D+     ++  L +           
Sbjct: 403 AGIAYLVRGGERFFARREVRDAIVLLRGAARSAEPDIPMPTTVRDVLTSAGWSA--APPA 460

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            R  T   +E +Q         +      + +LI   +  S       + G         
Sbjct: 461 GRGATRERWESMQALVGLADDLWAKRRASLPDLIQDLEERSSAQHAPTVEGVT--LASLH 518

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +  G E        +     +E     SL E    + +    +    +     + +    
Sbjct: 519 AAKGLEWDA-----VFLAGMSEGLMPISLAETDEAVAEERRLLYVGITRAREHLDLSYAR 573

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
                             ++   +     I  +  D  G    +        +   L   
Sbjct: 574 ARNPGGRAGRRRTRFLDGLWPSDN-PAAGIRRAPRDVGGRSAVVVTGTYDAELYEALKDW 632

Query: 639 LKKSTQEEYNRLLYV---GMTRASDQL 662
                +        V    + RA  +L
Sbjct: 633 RTARAEAIDRPKFVVFSDAILRAMAEL 659



 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 38/240 (15%)

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
            E  + +   +           +SL +LI +LE+               V + ++H AKG
Sbjct: 466 RERWESMQALVGLADDLWAKRRASLPDLIQDLEERSSAQHAPTVEG---VTLASLHAAKG 522

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   VFL      +                                     +       
Sbjct: 523 LEWDAVFLAGMSEGLMP-----------------------------------ISLAETDE 547

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E  RLLYVG+TRA + L +      +   ++ +R    +      ++      +   
Sbjct: 548 AVAEERRLLYVGITRAREHLDLSYARARNPGGRAGRRRTRFLDGLWPSDNPAAGIRRAPR 607

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
            +     +    +        L+   T +    ++         I   + E      + +
Sbjct: 608 DVGGRSAVVVTGTYDAELYEALKDWRTARAEAIDRPKFVVFSDAILRAMAELAPTTNADL 667


>gi|330429421|gb|AEC20755.1| DNA helicase [Pusillimonas sp. T7-7]
          Length = 639

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 105/685 (15%), Positives = 213/685 (31%), Gaps = 129/685 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQV--SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           + +E    I  D+ P    ++     + +    +     T+L      +  S T    E 
Sbjct: 71  AADEMRSRII-DIVPEAEDRLFIGTFHSFAGEILRQNG-TLLGIKTDFRIYSTTADRIEL 128

Query: 66  FS-LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
               +    + + F+P+K             +   L + +D  +   +    ++  +   
Sbjct: 129 LERAMMEAGVERSFSPEK-------------VLAVLDRLRDRLVGPDECERLFENPERAA 175

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           +       + A YE        +DF  LI   + L  K      I  K      +I +DE
Sbjct: 176 S----VSKIYAAYENFLLNENAVDFPALIFKAHLLFNKFPA---IARKYSTGYKYICLDE 228

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QDT+  Q+ ++R+LT+         SS + +FAV D+ Q IY ++GA  KR+ + +   
Sbjct: 229 FQDTNSSQYRLLRALTD---------SSDKNVFAVADDDQIIYQWNGASHKRLEQFRNDY 279

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
           +          S +++P +FR  A+++ + +++ S             + +    +++  
Sbjct: 280 E---------PSSLQMPTNFRCPAEVVALANRLVSHNILRSP----GKSPLEAGKNQLNI 326

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              V+L                             S  +  A  IA  I++  G+     
Sbjct: 327 NDRVRLLHF--------------------------SGQATEAAGIAQDIADRHGSAI--- 357

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                      + V+ R +     +    +   ND  I      R           L + 
Sbjct: 358 ---------SKVAVIARTKA----LLEGVQRAMNDRGIQAQIAQRRDSFASPPYVWLHSA 404

Query: 425 GRFILSQEDDLSFVCMLKS--PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
                 + D   F+  ++S   L   + D    +         +       A       +
Sbjct: 405 LNLANRRTDQRIFLVFVESSAKLMGVNLDFQNLVSLAATTHGDLLRTWVSEARKTEDLGE 464

Query: 483 HVIKYIH-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            + + +      +A+      F    +   K +Q+ +     +  +    +         
Sbjct: 465 PIQRLLDITASQLAERLDYGSFVKQTVSFFKSQQEGLEAEFPQFDEDTRAWAELAREITS 524

Query: 542 NSYSS--LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           +  +S  L+  + EL+              N + ++TVH +KG E   V++V     V  
Sbjct: 525 SIGASAGLETFLQELDLRSKEPPL----GPNVLPLLTVHGSKGNEFDHVYVVGLAEDVMP 580

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                K       EE  R  +V +TR  
Sbjct: 581 S-------------------------------FQSKSKGDNSPEMEEERRNCFVAITRCM 609

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDM 684
           + L +       N  K+  R   +M
Sbjct: 610 ESLTLSYSDEYRNWAKAPSRFLIEM 634


>gi|196047928|ref|ZP_03115106.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108]
 gi|196021184|gb|EDX59913.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108]
          Length = 417

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 153/473 (32%), Gaps = 92/473 (19%)

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             VGD+ QSIY F GA+P  +L       +           + L  ++RS   I+ + + 
Sbjct: 1   MIVGDDHQSIYRFRGADPSIILGFPADYNQ--------TKKVILDTNYRSNPFIVGLGNA 52

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +          + ++      +                              + S  +S 
Sbjct: 53  IIKHNTKQFKKTLNTHKQNGSKPQ----------------------------YYSPDNSE 84

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +       A  I   I + I              + +D  +L R    +  IT      
Sbjct: 85  EE-------ASMIIDDILSQIKEGKK---------EYRDFSILYRTHAISRAITDQL--- 125

Query: 397 KNDYKIS-VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                I  V    + +  ++  +K ++ + R I+    D   +  +  PL   S+D +  
Sbjct: 126 -VLRDIPFVQYKTKDLFYNNSLVKPVIDVLRLIIRPRSDFEALKGVC-PLLYISKDKVMD 183

Query: 456 -ICTQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFTLI-LG 509
            I       +   +     +    +K     +  +  + + I   +  S  D    I  G
Sbjct: 184 EILNAYAMDDLNGDTKPLISYLLQTKLSNHQRERVLLLLKTIKECRKVSAVDAIKTIRYG 243

Query: 510 AKKGRQQFISRFGNEV-------IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
             +  Q  +              ++ LDE  +       N+     + I +LE     +K
Sbjct: 244 YLQYDQYLLDNKRKTATMHKEMLMENLDELESSAKNF--NTVKDYIDFIEKLETQFEKMK 301

Query: 563 R-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                 + N + +MTVH +KGLE   V+++     +  HK   ++               
Sbjct: 302 ALQKEQSVNAINLMTVHGSKGLEFNHVYIIGACEGIMPHKSALEVMDD----------FI 351

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           + +  S+N ++            EE  RLLYV +TRA D L +    N   ++
Sbjct: 352 LDRKMSKNELIK--------EQIEEERRLLYVAVTRAKDNLHVYSPKNIRGKE 396


>gi|294814879|ref|ZP_06773522.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
            27064]
 gi|294327478|gb|EFG09121.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
            27064]
          Length = 1264

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 66/548 (12%), Positives = 151/548 (27%), Gaps = 86/548 (15%)

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------------------EYIQKF 473
            D  + + +L SPL      D+ ++     + E                      E +   
Sbjct: 617  DTGTALALLTSPLGGMDAADLRRLGRALRDEERAAGNRVPPPSDELIARALAEPERLVTH 676

Query: 474  ANCGISKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFIS---------RFGN 523
                    Q +   +     + +   +  D    +        +            R  +
Sbjct: 677  DRTYAFGAQQLGGLLRHARELLERGGTAEDALWALWDGTGWPARLERAALRGGAAGRNAD 736

Query: 524  EVIDVLDEFLN-FTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTA 580
              +D +    +      E+   +     + E++          A  +  + VR+MT H +
Sbjct: 737  RDLDAVCALFDTAARAEERTGGAGALNFLEEIDAQDIAADTLSARRSRPDAVRLMTAHRS 796

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE  +V +      ++     +   +        G+   +                  
Sbjct: 797  KGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSPG--------------- 841

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM------------VYDS 688
             +   E  RL YV  TRA ++L++      +++     R   ++               +
Sbjct: 842  -ALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLAELGVEPKDVTGRPRRPLA 900

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP-- 746
                    +    +                      + E               L  P  
Sbjct: 901  VAALVAELRATTVDPDASPALREAAARRLARLAALTDEEGLPLVPAAHPDRWWGLHEPTH 960

Query: 747  ---IKNDINEPYILNPSTIDTKG--KTNLESLLSDN--------QTFNRGLIIHKLL-QV 792
                  D + P  L+ S +D       +L+  L                G ++H L  +V
Sbjct: 961  SHAPLRDRDHPVTLSGSALDQLAGDGCSLQWFLGREVKADAPATAAQGFGNVVHVLADEV 1020

Query: 793  IFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY 846
                        +            +A     +E ++   ++ R L   +M       + 
Sbjct: 1021 ASGRTPADLAVLMERLDSVWDGLAFDAPWKSQQEKEHARAALERFLRWHVMDRGGRTTAA 1080

Query: 847  SEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
            +E      +   +  + I G +D++       +++ ++KT    P   E        QL+
Sbjct: 1081 TEHPFDVTLEAGEYAVRIRGSMDRVERDAQGRVYVVDFKTGKQAPTAREVDR---HPQLA 1137

Query: 906  IYEKILKD 913
            +Y+  +++
Sbjct: 1138 VYQLAVRE 1145



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 116/383 (30%), Gaps = 39/383 (10%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L      Q +  + +    +       L  A+ L+  S  +       
Sbjct: 94  AAVELRDRMALRLGGARGPQATTFHSFCYALVRAHQDADL-FAEPLRLLSGPEQDVMVRE 152

Query: 68  LLSS-FFLTQKF--------TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+    L              +  + T+    +   +      ++   + +  R     
Sbjct: 153 LLTGQLDLEADGFDGHRWPDELRACLTTRGFADEVRAVL-----ARSRELGLGPRSLARF 207

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++       A    A Y +      VLD+ +L+     L ++   +           +
Sbjct: 208 AARTGRPDWRAAASFLAEYLDVLDMQGVLDYAELVHRAVLLAERAGPAPDF------PYD 261

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + +DE QDT   Q  ++ +L              RTL A GD  QSIY+F GA+   +L
Sbjct: 262 TVFVDEYQDTDPAQVRLLTALAG----------GGRTLVAFGDPDQSIYAFRGADVNGIL 311

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                 +      G+   +  L  S RS A +L     +       +  ++         
Sbjct: 312 DFPATFR---HPDGRPADVAVLTTSRRSGAALLGATRLLTRRMPLTRLPADKVRAHRELA 368

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---ARRIAYTISN 355
           ++R G  G V+ +       +              D +P    A ++   AR I      
Sbjct: 369 ATRPG--GRVETYTFPTPSAELDNVADILRRAHLEDGVPWHGMAVLVRAGARSIPAVRRA 426

Query: 356 MIGTDTIFSNGKKRVIQAKDILV 378
           +             V    +  V
Sbjct: 427 LTAAGVPLETDGADVPLRHEPAV 449


>gi|307243591|ref|ZP_07525736.1| UvrD/REP helicase [Peptostreptococcus stomatis DSM 17678]
 gi|306493032|gb|EFM65040.1| UvrD/REP helicase [Peptostreptococcus stomatis DSM 17678]
          Length = 750

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 101/671 (15%), Positives = 193/671 (28%), Gaps = 92/671 (13%)

Query: 33  KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92
               LS E+      KK   +Q A                FL +     +  + +   + 
Sbjct: 103 DIAMLSEESQIIDDYKKGILIQMAIDEYESIPASETRIRSFLKKDLRDDQAQVDKWYREF 162

Query: 93  SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
           +  +   +K    ++  I        +       + +   +  +Y+    +    D++D+
Sbjct: 163 TNIVLNAIKLM--KYADISVDRLEAYLDHGQATIMKIIGPIYKNYQTILDQEGYFDYDDI 220

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           +I    +L + +    +  K      ++  DE QD++ IQ ++I  ++   +   +   S
Sbjct: 221 LIRAYRILVENES---VAEKYQARYAYVFEDECQDSNEIQGKIIDIIS---YKKASRKKS 274

Query: 213 PRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
            R L  VGD  QSI   F G++P+                 Q     E+ ++ RS+ DIL
Sbjct: 275 KRNLVRVGDVNQSITGTFTGSDPRYFKDF----------CLQADHFYEMNMAARSSRDIL 324

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
            + + +    ++                        + +      Q         +   +
Sbjct: 325 DLANHLVDQAKDHLE--------------------GIHIEPVESGQAYKSNPKTDKYMVA 364

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                 QE    ++A+ I Y                ++      I VL     DT  +  
Sbjct: 365 ARSLKNQEEERDLVAKTIGY---------------YQKAFPNYSIGVLSFSNYDTDDLGD 409

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS----FVCMLKSPLFN 447
                     I               I DL     F+L    D          +     +
Sbjct: 410 YLDA----RDIKYDKLGADSKVRKKVIGDLKLTLDFLLEPTRDNFVDLVMEAFVARFDLD 465

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            S++D+  I T   + +  YE +                 + + I +       +    I
Sbjct: 466 LSQEDLESIATSLAKED--YEALIYDGLYMDEWISRARVRLDDSIRMVFSKRMSESMLAI 523

Query: 508 --------LGAKKGRQQFISRFGNEVIDVLDE-----FLNFTLRNEQNSYS----SLQEL 550
                             ++R      +VL       +L   L  E         SL + 
Sbjct: 524 RSICDHNQADKLGLVSHILTRLNLTSNEVLLSKYIVFYLGNLLSYEGADLVRLALSLDKR 583

Query: 551 ISELEQYPPTIKRAHSANH---NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            S +                    V + T+H +KG+E   V +       F         
Sbjct: 584 YSRVFDGAIESIYDMGETDPLGGSVTLATIHKSKGMEWDAVIITGINKSDFPSSLDDYFR 643

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIV--------SDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +                +   + I+        +     LK +   E  RLLYVG+TRA 
Sbjct: 644 VDRKYLRSDFKYPEAFVNMDIDKILGVNGGKTRASYEDDLKLALIGERVRLLYVGITRAK 703

Query: 660 DQLIICKHSNT 670
             L++    N 
Sbjct: 704 SSLLLLNSKNK 714


>gi|240115749|ref|ZP_04729811.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
 gi|268601427|ref|ZP_06135594.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
 gi|268585558|gb|EEZ50234.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
          Length = 396

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 125/441 (28%), Gaps = 97/441 (21%)

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RSTA IL + +KV                                LW Q+      +   
Sbjct: 1   RSTARILKIANKVIENNPKLFTKK---------------------LWSQLGEGEPVKVV- 38

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                           +    A  +   I    +IG D           +  D  VL R 
Sbjct: 39  -------------ACQNEQHEADWVVSQIVKQKLIGGDKT---------RYADFAVLYRG 76

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
           +    +     R      +I    +      D   IKD+++  R + +  DD +F+  + 
Sbjct: 77  KHQARIFEEALR----GARIPYRLSGGQSFFDKAEIKDVLSYVRLLANPNDDPAFLRAVT 132

Query: 443 SPLFNFSEDDIFKICTQRHETETV-------YEYIQKFANCGISKFQHVIKYIHELIHIA 495
           +P     +  + K+    HE E          E +    N      Q  +         A
Sbjct: 133 TPKRGIGDVTLGKLNAYAHEHECSLYEAAQNEEALATLNNTNRQHLQAFMDMFGNYRAKA 192

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRF----GNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
           +     +F   +L         +       G      + E +++  R  +    ++ EL 
Sbjct: 193 EIDEAGEFINSLLEEIDYENHLMQNEEGKAGEIKWRNVGELVSWFARKGERDGKNVIELA 252

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             +        +      + V + T+H AKGLE P VFLV     V  H           
Sbjct: 253 QTVALMTLLEGKD-EEETDAVSLSTLHAAKGLEYPYVFLVGCEEGVLPHN---------- 301

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                      +++   EE  RL+YVG+TRA  QL +       
Sbjct: 302 -------------------------DSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRK 336

Query: 672 NEKKSNQRTWYDMVYDSFHND 692
            +           + +    D
Sbjct: 337 KQGIWQFPEPSRFIDEMPQED 357


>gi|134097688|ref|YP_001103349.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291006353|ref|ZP_06564326.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910311|emb|CAM00424.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 693

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 94/655 (14%), Positives = 181/655 (27%), Gaps = 172/655 (26%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQ----ASQTQCIEERFSLLSSFFLTQKFTP 80
                ++   +      G       A   +Q      +    +      + F L  +   
Sbjct: 65  ARAAGEMRTRLRALGAAGVQAQTFHAAAFRQLRYFWPRVHDSQVWPLTDNKFRLVMQAAG 124

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEE 139
           +  + T++  +   DL  +++ S+   +             +   A       + A YE+
Sbjct: 125 RVGLPTEK--ESVRDLAGEIEWSKACLVGPEQYPAAAAAAGRDAPAPPEQVSQVFAGYEK 182

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K    VLDF+DL+++T  +L++      I  +        ++DE QD + +Q  V+ + 
Sbjct: 183 LKNGAQVLDFDDLLLHTAAILEEHPE---IAEEFRDRYRSFVVDEYQDVNPLQQRVLDAW 239

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                           L  VGD  Q+IYSF GA PK ++   R   +         +++ 
Sbjct: 240 LG----------KRDDLTVVGDANQTIYSFAGAAPKWLVGFPRRFPE--------ATVVR 281

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L   +RST  ++ + ++V             S T +R    R                  
Sbjct: 282 LERDYRSTPQVVALANQVIDAARERP-----SGTRLRLVGQRPDGPRP------------ 324

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                          +  +       A  IA+ I+ +              +   ++ +L
Sbjct: 325 ---------------NFAEFDDEPAEAHAIAHKIAKLAKQG----------VALSEMAIL 359

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R    + +          D +I               ++  M   R   S+ +      
Sbjct: 360 FRVNAQSEVYEKAL----ADAEIPYQVRGGERFFARTEVRQAMVTLRAAASRYE------ 409

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
                                   E + E        G    +   + +  L+ +A+   
Sbjct: 410 --------------QSGDLPADVREVLTEVGLTDEPPGGGAARERWESLIALVELAEEL- 454

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                                                        + L   ++EL+    
Sbjct: 455 ---------------------------------------AATVPEADLARYVAELDVRAE 475

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
           +           V + ++H AKGLE   VFL          +H                 
Sbjct: 476 SQHPPTVEG---VTLASLHAAKGLEWDAVFLAGLVEGTLPIQH----------------- 515

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                 +  EE  RLLYVG+TRA + L +    + +   
Sbjct: 516 ------------------ADTPAAIEEERRLLYVGVTRAREHLQLSWALSRAEGG 552


>gi|183602118|ref|ZP_02963486.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219683030|ref|YP_002469413.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191350|ref|YP_002968744.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196756|ref|YP_002970311.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218611|gb|EDT89254.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219620680|gb|ACL28837.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249742|gb|ACS46682.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251310|gb|ACS48249.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289177477|gb|ADC84723.1| Putative ATP-dependent DNA helicase [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794343|gb|ADG33878.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 1378

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 89/664 (13%), Positives = 199/664 (29%), Gaps = 115/664 (17%)

Query: 42  GNPTILKKAQTLQQASQTQCIE--ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
           G  T+    + + Q       +  +      +  LT     ++   T +  K     ++K
Sbjct: 181 GCLTVADAIERITQWDAAFRTQILDLLQTDETGLLTGPLADRQRGATPKAVKDVLKARKK 240

Query: 100 LKKSQDEFIKI------------RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            +K   E+++              D     +          +   L   ++E K++  + 
Sbjct: 241 AEKKGGEYVETPGDKDAVGEAIHADAELAARDLYLVAMKRDVLLGLVREFDEEKRRRHMA 300

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           ++ D +I    L+++      I     ++  H+L+DE QDTS  Q  ++ +L        
Sbjct: 301 EYSDFVIAAYQLVERFPS---IGAHYRRQFTHVLLDEFQDTSTTQSALLAALFHVDEPHG 357

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              S+  +  AVGD  QSIY++ GA P               +       + +  + R++
Sbjct: 358 TDRSAAVS--AVGDPFQSIYAWRGASPGAFRMFINDF-----HMPAAAEPLPMTRTRRNS 410

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             +L   + +              T  +R    R       ++  Q +   D       E
Sbjct: 411 RVVLQGANNL--------------TKVLRRVEQRPSSANAQEVPVQPLRNVDDGSVEVDE 456

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
              +      +      + R +  ++                      + VL R +K   
Sbjct: 457 GTLAVLGFQTRGQEVDAVTRFVKQSVEQYGDACKPGD---------SPVAVLFRGKKSMA 507

Query: 388 LITFLTRFLKNDYKIS--VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
           L       +         V       + D   ++D++AL + +    D  + + +L +P 
Sbjct: 508 LYEDQLSQVTLRDGRPLRVRAVGLSAMLDRPEVQDVLALLKVVGDHTDANALMRLLATPR 567

Query: 446 FNFSEDDIFKICTQRHET------ETVYEYIQKFANCGISKFQHVIKYIHE-------LI 492
           +     D+ ++  +  +        T+ E     A     ++  +++           LI
Sbjct: 568 YALGALDLKRLARRAADLNTEYRFRTLVEAGLAPAGTPKREWGALVRQYARNAPNMVYLI 627

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQF-----------------ISRFGNEVIDVLD----- 530
            +               + +GR                    +++  +  ++ L+     
Sbjct: 628 DMLLRDDVEAQLEAAGLSDEGRAGVMQAVRAMHRVQDEMYQPLAQVIHTAVEALNLDVDL 687

Query: 531 -----------------------EFLNFTLRN----EQNSYSSLQELISELEQYPPTIKR 563
                                    L           Q    +L+  ++ L+    +   
Sbjct: 688 MVASSLRTGGAPAPRDAVRAAIDALLETVNTYTSEIAQQQRPTLRGFLTYLDMANGSDMP 747

Query: 564 AHSAN----HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             +A+      +V +MTVH +KGLE   V +V      F       + +    +    + 
Sbjct: 748 EAAADLGDEPADVVLMTVHQSKGLEWDAVAIVGMQQGAFPSNKGDALRVKALEDRGSKLD 807

Query: 620 IWIP 623
              P
Sbjct: 808 WEPP 811



 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 58/225 (25%), Gaps = 43/225 (19%)

Query: 761  TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--------------FTLPEHKRKNFIT 806
              D   +               G   H   Q                    E   +    
Sbjct: 1158 ATDFALEIIRPVPQVSTPQAQAGTRFHAWAQRYLEAGVNPEYGISQEAMAREVAHEAEAV 1217

Query: 807  SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI--II 864
                +  +  P ++   L+    R LE+          +    +V   ++     I   +
Sbjct: 1218 EQAERGGRPVPREQRDLLI-WKQRFLESAW-------SAREPAAVEQTVSTFVSGIGKRV 1269

Query: 865  SGRIDQISIS-----------QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK--IL 911
              ++D +                   I ++KT               +AQL +Y     L
Sbjct: 1270 DAKLDAVFHGGLGDGTSGASGDARYTIIDWKTGSRPRN--AQQRAGKLAQLDMYRYFWAL 1327

Query: 912  KDSYPNKSLVCLLIYVS----EPKVFIIPQNKLNKAFAEISTKIP 952
            +   P   +   L YVS       + + PQ    +  AE+   +P
Sbjct: 1328 QKRIPMSQIDAALYYVSEKDPAKALVVAPQRSEAEVLAEMRAGVP 1372



 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/151 (9%), Positives = 40/151 (26%)

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
              +       +   ++   +  RL+YV +TRA    ++      +  +            
Sbjct: 896  EPDAWNLSQKEERGRALHADERRLMYVALTRAKHDALVTYSVGATTSRIPEDNAKESGAP 955

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
              F  + R       +   + E  A++  T  P               D+ +  +     
Sbjct: 956  SVFWRELRDSMSCDDSFSQRVELTAFDNQTTAPARPVAATAGNTAVTYDDLESTQPRSLH 1015

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
             +       ++     +      ++    + 
Sbjct: 1016 ERGAKRPEGVIVGKGAEQFATLLVDEPYEEP 1046


>gi|227502915|ref|ZP_03932964.1| helicase [Corynebacterium accolens ATCC 49725]
 gi|227076337|gb|EEI14300.1| helicase [Corynebacterium accolens ATCC 49725]
          Length = 684

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 92/737 (12%), Positives = 190/737 (25%), Gaps = 166/737 (22%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A+   +    Q   +    L            +++          D+  +++ 
Sbjct: 83  AQTFHAAARRQLKYFWPQVAGDLPWTLLDNKFPLVARAVRSVGLDNSKDMIRDVLAEIEW 142

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCV--LDFEDLIINTNDL 159
           ++   +   D  +       T  +           YE+AK    +  LDF+DL+++    
Sbjct: 143 AKSALVSAEDYESVIAETDRTAPADAAKVAEAFRRYEKAKATPDMMHLDFDDLLMHIAGA 202

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           ++       I     ++    ++DE QD + +Q  V+ +   D             L  V
Sbjct: 203 IEN---VPAIAETFREQYRTFVVDEYQDVTPLQQRVLNAWLGD----------RDDLTVV 249

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF+GA P+ +L   R             +I++L   +RST  +  + ++V  
Sbjct: 250 GDANQTIYSFNGASPEYLLNFSRSYP--------DGTIVKLQRDYRSTPQVTDLANRVIG 301

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                                       ++L        +                    
Sbjct: 302 KATGR------------------AAGTRLELQGMREPGPEPTFK--------------AY 329

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            S    A+ +A  +  ++             + A +I +L R    +            D
Sbjct: 330 ESEENEAQEVAGQVLTLLNQG----------VPASEIAILYRINAQSEQFEQAL----AD 375

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +               I + + +      ++D       +                  
Sbjct: 376 AGVVYQVRGGEGFFRRPEILEAIRVLIAATRRDDLPEDPVAIA----------------- 418

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                   E          ++ +   + ++ L+              I+           
Sbjct: 419 ---RAAFVELGLSATEPQGAQARERWQSLNALVG---------LIEKIV----------- 455

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                               E      L  ++ EL +     +         V + TVH 
Sbjct: 456 --------------------ESTPGIDLNGVLGELRRRSTDKQAPAMEG---VTLATVHA 492

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFLV    ++    H  K                                  
Sbjct: 493 AKGLEWDAVFLVGLSEKLMPINHAIK---------------------------------A 519

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL YVG+TRA + L +      +   ++++     +   +   +      +
Sbjct: 520 GNEQIEEERRLFYVGITRAREHLALSWALAKTAGSRASRERTRFLDGIAPGVESAAGSGR 579

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                          +         E  E          +        + +    Y++  
Sbjct: 580 SRRPKRCRVCSGVLETPAEKVIGRHEDCEGNGDDEVFSALRSWRAQVAREEKVPAYVIFT 639

Query: 760 STIDTKGKTNLESLLSD 776
                     L +  ++
Sbjct: 640 DATLQAISEELPADEAE 656


>gi|87122397|ref|ZP_01078278.1| related to ATP-dependent DNA helicase II (Rep) [Marinomonas sp.
           MED121]
 gi|86162372|gb|EAQ63656.1| related to ATP-dependent DNA helicase II (Rep) [Marinomonas sp.
           MED121]
          Length = 766

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 99/661 (14%), Positives = 208/661 (31%), Gaps = 120/661 (18%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF--LTQKFTPQKNIITQEINKKS 93
           S +++    T       L +  + + + ER  L++  F  +       + ++  ++N + 
Sbjct: 76  STALKPEVMTFHSFGMKLARRMEQRGLIERSELITDDFSLVKLMREAMQQLVRMQVNIEL 135

Query: 94  PDLKEKLKKSQ---DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            D K+ L+ +    D+            +             L    E  +K+  +  F 
Sbjct: 136 HDEKDWLEDAMLFVDQVKASTQSAKAVFLEAKWSKDRAFFPALYKQLEIIRKRKKIRFFS 195

Query: 151 DLIINTNDLLKK-RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           DLI +    ++   +    +   +  +  H+LIDE QD +  Q+ +++ L +        
Sbjct: 196 DLISDPLSFIEDANEEQKALYLGLVPKYTHLLIDEFQDINDSQYSLLKHLYQ-------- 247

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             S      VGD +Q IY + GA+P  +        K+  +  +     +L  SFR    
Sbjct: 248 --SHSYWMMVGDVQQCIYEWRGAKPDIMA-------KQIDHDFKPIHRFDLSTSFRFGHQ 298

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I      + +    A     D+ T     +  IG+    +       +       + ++W
Sbjct: 299 I-----GLMASNLLAHNKQLDNETPEEESACVIGKGEQTEFSFAQYDKTGKALLNELKTW 353

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
            +                                           +  VLVR   D   I
Sbjct: 354 GNQVG-------------------------------------NLSNCAVLVRLYSDMVPI 376

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV-------CMLK 442
                      K+    +    L ++  I+ LMA    +    DD S          ++ 
Sbjct: 377 QLAL----MHRKVPYQLHGDSPLFENRQIRMLMAYIGVMAGGLDDASLFYHKEDISYLMT 432

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH--VIKYIHELIHI-AQFCS 499
            P      +    I  +   +  +   + +      + ++   +++    L  +      
Sbjct: 433 VPSLGIPPNQRKTINQRAIASPHLIPQMLESMADETNGWRAKKLLERADWLRSLTLYSKQ 492

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDV-----LDEFLNFTLRNEQNSYSSLQELISEL 554
           P       L      + F +    E+         + F+ +    + ++ + L EL    
Sbjct: 493 PDKGIINTLDKLGIYRYFENTSSKEIQYNEKVATCESFIAYVAGVKLDAKALLDELK--- 549

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +       R +S N + + +M++H AKGLE  +V +      +F +    K+        
Sbjct: 550 QLASLDQSRENSKNQDSLHLMSLHKAKGLEFDLVIMAGLKEGLFPYYEANKL-------- 601

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                      +      RL YVG+TRA  +L++    + +  K
Sbjct: 602 -------------------------DATQLAAERRLFYVGITRAKKKLVLLTKPDKAEAK 636

Query: 675 K 675
           +
Sbjct: 637 R 637


>gi|227510075|ref|ZP_03940124.1| possible ATP-dependent DNA helicase PcrA [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
 gi|227190454|gb|EEI70521.1| possible ATP-dependent DNA helicase PcrA [Lactobacillus brevis
           subsp. gravesensis ATCC 27305]
          Length = 786

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/613 (13%), Positives = 175/613 (28%), Gaps = 106/613 (17%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            +++ +       +  L   T    +   Y   K++N  +DF D+ I    LL + D   
Sbjct: 190 KQLKAQLGEVGEDEYDLDFYTDYLAVMTQYMILKRQNSFVDFNDMKILLRQLLDQPDHVR 249

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVI-RSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
               +I      +++DE QD   +QW+++ R L+++             L  +GD+ QSI
Sbjct: 250 SFH-QIMSRFKLVVMDEFQDIDNLQWDIMTRLLSQEALS---------RLIVIGDDDQSI 299

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YSF G+ PK           +            L  ++R+   IL+    +         
Sbjct: 300 YSFRGSNPK--------FILKFHGILPGAKTYRLSTNYRTGGQILSEAKPLIKHNYVRLA 351

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               +            + G V ++    +  D   +   +  +   D        ++L 
Sbjct: 352 KELKAFN---------EKKGQVHVYPLKTAGFDPNSDMFTKLVSQIRDPEIDNHQIAVLV 402

Query: 347 RRIAYT--ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
           R  +    +++ +    I+ N   R    +  L+         ++  L +    +     
Sbjct: 403 RYNSDRTLVADWLANQQIYVNINNRGAIFQHTLI-------YRILVNLMQAFWQNRFQPF 455

Query: 405 V-GNDRFILTD-HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                R   T     + ++      I S  D                    + +  QR E
Sbjct: 456 HEQATRIGFTTYRRHVTEIDKAAGGIDSLSD-------------YLEIATKYNLQHQRTE 502

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH-DFFTLILGAKKGRQQFISRF 521
            +  +  I           +   + + +              +  +L        ++++ 
Sbjct: 503 NQKRFAKIDTRVRMAFKIIKEQRQDVEKANSETSIGDVFMQIWNTVLELTATYFDYMTKN 562

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP------PTIKRAHSANHNEVRIM 575
                D                   + +     +Q            +   +  N+V+ +
Sbjct: 563 DFVSKDT----FKDMTTYLHTEIKQITDPDVWFDQEDQKRQLLEANNQKGVSLENDVQFL 618

Query: 576 TVHTAKGLESPVVFLVDTGSQVFS------HKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++H AKGLE   V+L     +         +             D     +   + K   
Sbjct: 619 SLHQAKGLEFKYVYLYGLSDKQLPVGTTIINDWFHPDISFEDFIDRWNDLVTRQRVKELT 678

Query: 630 NIVSDLIKHLKKST-------------------------------------QEEYNRLLY 652
            I+      + +                                        EE  RL+Y
Sbjct: 679 GILEAAFIDITEEVRKNKHIDLNHIEIEKCHDLDLDLLHNWYTAIRHYSQFIEEERRLIY 738

Query: 653 VGMTRASDQLIIC 665
           VGMTRA   L + 
Sbjct: 739 VGMTRAKTVLNVS 751


>gi|220909979|ref|YP_002485290.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219866590|gb|ACL46929.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 776

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 90/638 (14%), Positives = 173/638 (27%), Gaps = 85/638 (13%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
              LL       + T      +    +  P L   +                    +  L
Sbjct: 152 YRQLLEGRQFDGEETEYLRRQSVLRTEVLPHLANTVIHEAKSSGLSPQDLADLAREEGDL 211

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
             L +A  L   Y+   ++   +D++++I+    +L+          +    +  +  DE
Sbjct: 212 PILAIAAGLYQRYQTLLRERDFIDYDEMILAALRVLEHEAP----LTQWQNRVFAVFEDE 267

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRI 243
            QD++ +Q  ++  L  +             L  VGD  Q+I S F  A+P         
Sbjct: 268 AQDSTPLQTRLLEILATN-----PDRPEQPNLVRVGDPNQAINSTFTPADPFFFRDFC-- 320

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI-PENAQGLSEDSTTTIRHRSSRI 302
                T    +     +  + RS+A IL   + V +   ++    +E        +    
Sbjct: 321 -----TQCQSQGRFFTMDQAGRSSAIILAAANFVLNWVNQSKLAGAEQPFRPQVIQPVAA 375

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
           G            +  +                             I   + ++   +  
Sbjct: 376 GDPQGDANPPPTGAGLEIYTPSDI----------------YQTVNLIGQRVQDLFTANPQ 419

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF--------LKNDYKISVVGNDRFILTD 414
                          VLVR+ K    I  +                +I +          
Sbjct: 420 GRA-----------AVLVRENKQGRFIADVLSQPQRYGLTVDLKQAQIEIYDVGSRDRRS 468

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--FSEDDIFKICTQRHETETVYEYIQK 472
           H+  + L AL +F+            L   +        D+  + +Q  +    + Y   
Sbjct: 469 HVPAEML-ALLQFLDRPHSPDYLKTALTVLVERQLIPAQDLNALVSQPEQ----FLYPTP 523

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                    Q   ++  +L+            T +  A +  Q  ++       + L + 
Sbjct: 524 LDPPLTPPQQAARQFCVKLLRARIELPHDQLITFLALALQYEQAELAT-----AEKLSDR 578

Query: 533 LNFTLRNEQNSYSSLQELI-----SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           LN   R  Q+  ++L  L         E               ++ I+T+H AKGL+   
Sbjct: 579 LNQQTRGRQSMSATLPVLQEIVGSERFEPVEVEETETRFLRARQLTILTMHKAKGLDWDY 638

Query: 588 VFLVDTGSQVFSHKHIKKMHI---------------MPSLNDDPGIPIWIPQSKSRNNIV 632
           VF+     Q    +                      +             P  +S     
Sbjct: 639 VFIPFLHEQTLPGQLWIPAQSQFLGDFTLAEVARAQIRHRLHQQSQSAHQPTGRSPLPDT 698

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           +   +        E  RLLYV MTR    L +      
Sbjct: 699 ATAWQRAADLKIAEEFRLLYVAMTRPKRLLWLSAARRA 736


>gi|84488957|ref|YP_447189.1| helicase [Methanosphaera stadtmanae DSM 3091]
 gi|84372276|gb|ABC56546.1| predicted helicase [Methanosphaera stadtmanae DSM 3091]
          Length = 731

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/552 (13%), Positives = 161/552 (29%), Gaps = 78/552 (14%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   +   Y    K+  +LD+  L     D+L    VS             +LIDE QDT
Sbjct: 202 ILFDIIDAYNMTLKERGILDYPMLETRLYDMLCDCKVSRL------NHFKVLLIDEYQDT 255

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q ++   +                +  VGD+ QS+Y F GA            ++  
Sbjct: 256 NYLQEQIYFKMAGYVLENNG------NITVVGDDDQSLYRFRGATIDL---FTEYLKRIN 306

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
              G     I L  ++RST +I+  V++   + +  +     +   I   S+    +  +
Sbjct: 307 DYMGITPKSIFLKKNYRSTVNIINFVNEFIHLDKKYESSRSINKPLIEPDSNSPNGLPVM 366

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            ++   + +  +  +          D+           RR+   I ++   D        
Sbjct: 367 GMFRNNIEELTTDLSNLIYDLKIGKDTS----------RRVGSKIYDLKQKDNPS----- 411

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  I +L    K+            N +++     +                   +
Sbjct: 412 -------IAILTNSPKEISAY--------NRHRLPFYVRESITGRSEDI---------AV 447

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            +          + S +       I    T  +  + +  + +K       K +      
Sbjct: 448 FNPRGQNIEATDIVSLICGLILVSIDSDATIENNLDNIPPHTKKILKDWRKKVE------ 501

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV------LDEFLNFTLRNEQN 542
           + L    +    ++   ++       +   S    E  +       + E +N T     +
Sbjct: 502 NYLSCKEKEVPLYEDDIVLSDLLDDIEVECSDLIKESSENSIYHDIIMETINQTNNAISD 561

Query: 543 SYSSLQELISELE--------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               L                           +    + IM++H AKGLE  +V + D G
Sbjct: 562 EGR-LSANQIFWHILVPIASGAVNVDDDMFDVSIDENINIMSIHQAKGLEFDIVIV-DVG 619

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             ++ +         P                S+ ++ ++           +  R  +V 
Sbjct: 620 CDIYKNDASSAFKRFPRNGGKTHSIEKYLGDYSKLSLSNENKGLDNA--FNDLIRRYFVA 677

Query: 655 MTRASDQLIICK 666
            TRA   LI+  
Sbjct: 678 YTRAKSLLILVG 689


>gi|296532031|ref|ZP_06894810.1| ATP-dependent DNA helicase PcrA [Roseomonas cervicalis ATCC 49957]
 gi|296267646|gb|EFH13492.1| ATP-dependent DNA helicase PcrA [Roseomonas cervicalis ATCC 49957]
          Length = 634

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 90/566 (15%), Positives = 154/566 (27%), Gaps = 116/566 (20%)

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++A      +DF+DLI      +++      +  +     + IL+DE QDT++ Q  +
Sbjct: 174 DYQQALAARGAVDFDDLIALPVRAMQEDPA---LAARWASRWSEILVDEYQDTNVAQHRL 230

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ L                +FAVGD+ QSIY + GAE  ++    R             
Sbjct: 231 VQLLAR----------PHSRVFAVGDDTQSIYGWRGAEVAQLRNFNRFYP-------TAP 273

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             + L +++RST  IL   + V +    A                         L + + 
Sbjct: 274 EPLRLEVNYRSTRRILLAANAVAAQDRQA-------------------------LRKTLR 308

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                         +    +  +  +A+         I+ +                  D
Sbjct: 309 PAEAQAPAGPPIILSPADTAEEEGQAAAA-------RIATLRRASPDR--------PWSD 353

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED-- 433
             VL+R       +            I               I    A  R  LS  D  
Sbjct: 354 HAVLLRAG----FLAEPILAALRQAGIPARQLGEREPDPPREILAAQAWLRLGLSFRDGE 409

Query: 434 -----DLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK--FQHVI 485
                D +F      P    S     ++      +   +   +         +   + V+
Sbjct: 410 WDATADDAFRRACAYPKRGISGALFARLREHAAGQGRALAAAVPDLPATPEERALLEGVV 469

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           +    +        P     L L          +     + +     +         +  
Sbjct: 470 QTAQSIAGDMAKRRPRPADALQL------AAARAGLAVGLREAPPALIAAWEAAFAAAAQ 523

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           S   L + L+              + V +MT+H AKGLE   V +      VF H     
Sbjct: 524 S-PSLPAYLDALALGTATGDGTAPDAVLLMTLHRAKGLEFTHVLMPGLEEGVFPH----- 577

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                          K   +    E  RL YVG+TRA   L + 
Sbjct: 578 ------------------------------FKAEAQGALAEERRLFYVGLTRAKQSLWLS 607

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        R   D+    FH 
Sbjct: 608 WVKRRREWNARPSRFLDDIPAQLFHA 633


>gi|228984401|ref|ZP_04144580.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775370|gb|EEM23757.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 417

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/475 (15%), Positives = 139/475 (29%), Gaps = 93/475 (19%)

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
           S    LF  GD+ Q+IY + GA  + +L   +             +II L  ++RS   I
Sbjct: 4   SPRNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSNPFI 55

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           + + ++V  + +        S      +        T+                      
Sbjct: 56  VGLGNEVIKLNQERFDKELYSVREEGVQPFYARPATTLD--------------------- 94

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                          A +I   I   + +              KD  +L R    +    
Sbjct: 95  --------------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR--- 128

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--- 447
            L   L       +         +H  IK ++   R ++      S   +L +       
Sbjct: 129 SLLDQLTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIGRDD 188

Query: 448 -FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             S  +  +         ++  ++    N    + + V + I + I   +   P      
Sbjct: 189 CISFIEREQWKYGEGRFPSLLHFLLLNPNLKPFQVKKVNERI-DFIKFIKELEPKKALKE 247

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           I+  K    +++         +  +     L     S +   ++ + L+     I+    
Sbjct: 248 IIHGKGKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQGQKE 307

Query: 567 -------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                     + V +M++H AKGLE P VFL+     +  H    K              
Sbjct: 308 MEALKTMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD------------- 354

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                        ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 355 -------------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 396


>gi|314972550|gb|EFT16647.1| HRDC domain protein [Propionibacterium acnes HL037PA3]
          Length = 719

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/571 (14%), Positives = 157/571 (27%), Gaps = 164/571 (28%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  KK+ CV+D +D+++    LL +      I  ++     H ++DE QD S
Sbjct: 200 VGRVLAGYEAVKKERCVIDLDDILLCAVGLLVQH---RDITEEVRVRYQHFVVDEYQDVS 256

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA P  +L           
Sbjct: 257 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGARPDYLLNFVAD------ 300

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RS+ +I+ + ++V      ++                      V 
Sbjct: 301 --HPGAKRIDLVRNYRSSPEIIRLANEVLVNRMTSEE--------------APEHGRGVT 344

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L  +  S  +       +               +  A  IA  + +              
Sbjct: 345 LVSRGRSGPEPVYQALGDD--------------ASEAAAIAMWVESRHAAG--------- 381

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            +   +I VL R       +            I  +        D   ++  L AL R +
Sbjct: 382 -VPWSEIAVLYRVNSQAAHLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALVRLV 436

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                D      L +     +                  +     A  G    +   + +
Sbjct: 437 A----DEPGADPLSTFDRVLT-----------------AQGWSVIAPGGAGDVRQRWESL 475

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +A                                              +  ++L+
Sbjct: 476 QALHDLAISLV-----------------------------------------NDGTTTLE 494

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            L +   +   T     +   + V + T+H +KGLE   V L      +           
Sbjct: 495 GLAAMFSRRTAT---QEAPVGDGVTLATLHASKGLEWDAVALYGMSDTMVP--------- 542

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 543 --------------------------FIMVETPAELASERRLLHVGVTRARRNLWVSYSC 576

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +  N  +     +   +  +    ++  + +
Sbjct: 577 SGGNRDRQGISRFLRGLPGTREVTDKPPRHR 607


>gi|314927508|gb|EFS91339.1| HRDC domain protein [Propionibacterium acnes HL044PA1]
          Length = 713

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/571 (14%), Positives = 157/571 (27%), Gaps = 164/571 (28%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  KK+ CV+D +D+++    LL +      I  ++     H ++DE QD S
Sbjct: 194 VGRVLAGYEAVKKERCVIDLDDILLCAVGLLVQH---RDITEEVRVRYQHFVVDEYQDVS 250

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA P  +L           
Sbjct: 251 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGARPDYLLNFVAD------ 294

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RS+ +I+ + ++V      ++                      V 
Sbjct: 295 --HPGAKRIDLVRNYRSSPEIIRLANEVLVNRMTSEE--------------APEHGRGVT 338

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L  +  S  +       +               +  A  IA  + +              
Sbjct: 339 LVSRGRSGPEPVYQALGDD--------------ASEAAAIAMWVESRHAAG--------- 375

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            +   +I VL R       +            I  +        D   ++  L AL R +
Sbjct: 376 -VPWSEIAVLYRVNSQAAHLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALVRLV 430

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                D      L +     +                  +     A  G    +   + +
Sbjct: 431 A----DEPGADPLSTFDRVLT-----------------AQGWSVIAPGGAGDVRQRWESL 469

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +A                                              +  ++L+
Sbjct: 470 QALHDLAISLV-----------------------------------------NDGTTTLE 488

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            L +   +   T     +   + V + T+H +KGLE   V L      +           
Sbjct: 489 GLAAMFSRRTAT---QEAPVGDGVTLATLHASKGLEWDAVALYGMSDTMVP--------- 536

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 537 --------------------------FIMVETPAELASERRLLHVGVTRARRNLWVSYSC 570

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +  N  +     +   +  +    ++  + +
Sbjct: 571 SGGNRDRQGISRFLRGLPGTREVTDKPPRHR 601


>gi|317121624|ref|YP_004101627.1| recombination helicase AddA [Thermaerobacter marianensis DSM 12885]
 gi|315591604|gb|ADU50900.1| recombination helicase AddA [Thermaerobacter marianensis DSM 12885]
          Length = 1504

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/479 (13%), Positives = 152/479 (31%), Gaps = 42/479 (8%)

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
              G    + T +   +      G  ++  +     D     + +      D     ++  
Sbjct: 641  RAGTGGATRTGVGTGALAADGTGVQRVRGEGAVGGDGGGEGEDDGADEEGDEQVDLTALE 700

Query: 344  ILARRIAYTISNMIGTDT--------IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              A  +A  I +++                 + R ++ +D++VL+R  K       +   
Sbjct: 701  REALLVARRIRDLVEGGPGRPPLHVWDSDLKRYRPVRYRDVVVLLRSAKGRA---AVFVD 757

Query: 396  LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            + + + + V             ++ ++AL + + +   D+    +L+SP+      ++ +
Sbjct: 758  VLSRHGVPVYTRSGSGYLAAPEVEMVLALLQVLDNPRQDIPLAAVLRSPVVGLDAANLAR 817

Query: 456  ICTQRHETETVYEYIQKFANCGI----------------------SKFQHVIKYIHELIH 493
            I     +T       +                              + +     +     
Sbjct: 818  IRLAARDTNFYEAACRVAGWDPDREEPAAAADPATTASGGHGELAKRLRTFFADLARWRG 877

Query: 494  IAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
             A+          I           +   G +    L+       + ++ +   L   + 
Sbjct: 878  YARRWPLSRVIQKIYDETGLLTFVAALPGGEQRRANLEALRERARQFDRFARQGLFRFLR 937

Query: 553  ELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             +E+            A   N + VR+MT+H +KGLE PVV + D G++    +      
Sbjct: 938  FIERLRERGDDLATAPALGENDDVVRVMTIHQSKGLEFPVVVVADLGARFRFEREQ--AL 995

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                L     +     + +  +     +    +  T  E  R+LYV +TRA ++LI+   
Sbjct: 996  FHRELGLGLKVADPQLRIRYPSLAYEAVRAGQRLDTLAEELRILYVALTRAKERLILVGS 1055

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
            ++   +  +                + +    L  + +  +W+A     HHP+  PL +
Sbjct: 1056 ADDLPKTAAGWWAAAGDGQGGGTGPQPLPAATLERARSYLDWLATAL-IHHPDAAPLRQ 1113



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/357 (17%), Positives = 105/357 (29%), Gaps = 45/357 (12%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
            P      I           +         L QA Q      R           +     
Sbjct: 262 GPAVWADTIEGDARRLAAVADEAAGAGCDGLLQALQQADTWPRLPQ----RPRGEAENPH 317

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
           +   +   +         +K               ++       + L K   A  E AK+
Sbjct: 318 HNRLKGEREAVKKAIAGWRKGLWSRPAADLAAELQRLEPYVTTLVDLVKEFAASLEAAKR 377

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSA-----WIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
              ++DF D+      +L +   +       +  ++ +    +L+DE QD + +Q  ++R
Sbjct: 378 DRGLMDFSDMEHYALRVLAEDVEADVLQPSDVARELRRFYQEVLVDEYQDINPLQDAILR 437

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK--- 254
            +  D         +   LF VGD KQSIY+F  AEP   L   R          Q    
Sbjct: 438 LVARD----GEEEGAGPNLFMVGDVKQSIYAFRQAEPGLFLERYRTYAPAPPVPAQDGAP 493

Query: 255 ---------------------------FSIIELPLSFRSTADILTVVDKVFSIP--ENAQ 285
                                         +EL  +FRS A I+  V+ VF+     +  
Sbjct: 494 GEGVAGGDGAGGAGGPSPAGGPCPAAGGWRVELNANFRSRASIVEAVNDVFARIMVPDLG 553

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
           GL+ D    +R R++       V   +  V  +  +  P              +S  
Sbjct: 554 GLAYDDAARLRPRATFPEPPAGVPAGDAPVEVYVLERKPDALDGDLPDRLATGDSPR 610



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 22/298 (7%), Positives = 70/298 (23%), Gaps = 38/298 (12%)

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
             S       +                T      E +    +  +P      R        
Sbjct: 1207 PSGPGGPQPVPAWLGPLLRGEPLPPGTVDDEAVEALRRRLAWRYPFAALANRFAKRSVSE 1266

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
             +++   +             +  P   +                  RG   H++LQ + 
Sbjct: 1267 LKRQADPEWQEFPLPADLRRGLRRPRLGEDGAAVPAPHPEPALTGAERGTATHRVLQHLD 1326

Query: 795  TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSC--DSYSEVS 850
                   +           +    +    ++   ++ R   +P+           + E  
Sbjct: 1327 LAGPLDAQAIARQVEAMVHRQLLTRAEAQVVDSEALARFFASPLGQRLRRAPSRVHREWM 1386

Query: 851  VSGKINC--------------------------------PKKDIIISGRIDQISISQQNI 878
             +  +                                      +++ G +D        +
Sbjct: 1387 FTLGVPAKALYPDLAGALDSQEPAPFGAAKAADPPSASPGDDLVVVQGIVDCFVEEDDGL 1446

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFII 935
             + ++KT     + ++ +   +  Q+  Y + L +    + +    L +++  +   +
Sbjct: 1447 LLLDFKTDEPRGRPLDELVALYAGQIRFYRRALAEI-TGRPVKEAYLYFLAVDQAVPV 1503


>gi|326771897|ref|ZP_08231182.1| helicase, UvrD/Rep family [Actinomyces viscosus C505]
 gi|326638030|gb|EGE38931.1| helicase, UvrD/Rep family [Actinomyces viscosus C505]
          Length = 1206

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 107/1095 (9%), Positives = 268/1095 (24%), Gaps = 218/1095 (19%)

Query: 2    KNRFGLSLNESYELIYK-------DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ 54
            ++   L+   +     +                       ++L++ T + T+        
Sbjct: 63   RDAVLLAPTRARADWLRGRAAHLLREGHGDGVVRVRTPAALALTILTTSLTMRPAPLPPP 122

Query: 55   QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112
                    +   + + S  +T    P +   ++    +  +L  +  +       + D  
Sbjct: 123  VLLAGAEEDSALASMVST-VTWPGLPAEATGSRAFRSELRNLLARAGELGISADDLADLG 181

Query: 113  RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
            R     ++      L           E + +   +D   L     + L      A    +
Sbjct: 182  RRLNVPIWGPASQLLRTWDAQGRASAERRAQTRKMDTARLQDRAVEALSSWGSDAVTAPR 241

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 + +L+D+ QD +     ++ +L      G         +  +GD   ++ +F G 
Sbjct: 242  PVP--DLVLVDDYQDCTAATARLLTALATPDPDGHRAQ-----IVVLGDPDVAVETFRGG 294

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             P  ++  +         +G   + + L   +R    I      V         ++  + 
Sbjct: 295  TPSLLVAAEDH-------SGLAATRLRLTTCYRGNPAIA----AVIRDQSARVPVTGTTA 343

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                  + R     +             Q     E   +              A +    
Sbjct: 344  HRQTTLAPRSPARSSAGPSSGASDAERPQAVAGVEVILASS------------AWQEHAH 391

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFI 411
            ++  +  + +             + V+VR   D   +    R       + +       +
Sbjct: 392  VARALRLEHV-----HHGTAWSQMAVIVRSAADAETLARDLR----RRGVPLASRTPAVL 442

Query: 412  LTDHLAIKDLMALGRFIL--------SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
            L    A   L+ + R  +              + + +L SPL   +  D+ ++  +  + 
Sbjct: 443  LRAEPAAAALLDIVRAAIRDQLGGHGEPPQRDAAINLLTSPLVGLTTMDLRRLRRRLRQA 502

Query: 464  ETVYEYIQKFANCGI--------------------------------------------- 478
            +         A                                                 
Sbjct: 503  QPAATPHASAAEPCEPSTSTGPAPVPAVGTGPRTGGDAALLALLADPEQASGFARSLDGQ 562

Query: 479  ------SKFQHVIKYIHELIHIAQFCS------PHDFFTLILGAKKGRQQFISRFGNEVI 526
                   +     + +  L                        A +  + + +       
Sbjct: 563  PLSAQAERLLIAARILEALRSAIGQTPAEAPRDVEALLWAAWNASERAEAWRATALLPSA 622

Query: 527  DVLDEFLNFTLRN----------------EQNSYSSLQELISELEQY--PPTIKRAHSAN 568
              +   L+    +                E++        ++EL+    P          
Sbjct: 623  SSVRTLLSEAAEHDLDVVTTLFKRAEVWAERHPGQDASSFLAELDAEVLPSDSVAPQGRR 682

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP--GIPIWIPQSK 626
               V +MT     G E  +V +V      +    ++       L  D   G       + 
Sbjct: 683  PEGVAVMTPAGCAGQEWELVVVVGLERDRWPDLRLRDSLTRTGLLVDAVTGRLTTDTVAP 742

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                  +  +   +   + +  R+L + ++RAS +L++   ++  +              
Sbjct: 743  GEGTSGTGAVAAARAQVRADERRMLIMALSRASRRLLLTATADAEHAPSPFLTEIARSAG 802

Query: 687  DSFHNDERVKKIKLTN---------------------SINKDEWIAYEWSTHHPENTPLE 725
             +  + +    +                          +  D       +          
Sbjct: 803  IALTDADGAPLLTPDTGDLTLRGLVGELRHAAICGNLEMATDAERRRGRAAVDLLADLAR 862

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD-------NQ 778
            +                  S       E   ++PS ++      L+  L+        + 
Sbjct: 863  QGVPGADPATWIGATGPTSSAPLIAAGERIRVSPSDVEGLAACPLKWFLTRSGGSAPASD 922

Query: 779  TFNRGLIIHKLLQVIFT---LPEHKRKNFITSYCTKNA-----KLWPAKEYKNLLLSITR 830
                G ++H + +            R+ F                  A   + ++  +  
Sbjct: 923  AQALGSLVHAVAERAEKEHLRGPALREAFEERLTDLGYPATWQGGLAADRARAMIERLDA 982

Query: 831  LLENPMMTTAMSCDSYSEVSVSGKINCPKK----------------------DIIISGRI 868
             L +     A+   +  E  V   ++ P                         + ISGRI
Sbjct: 983  YLAD---CDALGVRADVEQPVRADVDIPLSVLSPAVRQRAGLRIPTKGGNAVPVTISGRI 1039

Query: 869  DQISI----------------SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            D++                      + + + KT   VP++++  P     QL+ Y   L 
Sbjct: 1040 DRLEHVGGLLGGESEDSAGPDRNGTVRVIDLKTGQRVPKDVQRHP-----QLATYRLALS 1094

Query: 913  DSYPNKSLVCLLIYV 927
                   +   L+++
Sbjct: 1095 SQ-GLDVVGGALVFL 1108


>gi|310779666|ref|YP_003967999.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926]
 gi|309748989|gb|ADO83651.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926]
          Length = 721

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 82/608 (13%), Positives = 198/608 (32%), Gaps = 84/608 (13%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           ++ N +   +  +L           +R ++     +  + L +A  +   Y++  K+   
Sbjct: 151 KKWNDELIRIILRLISKVKNLSISPERLHSETKKYAKGSLLKIAGEVYMRYDKLCKREGF 210

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LD++DL+   + +L +    A +      +  +I  DE QD++ +Q ++++ ++      
Sbjct: 211 LDYDDLLYLCHKILSED---AELCESYKNKFKYIFEDEAQDSNYLQNKILKLIS------ 261

Query: 207 KNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                    L  VGD  QSI S F  + PK      + N            + E+  + R
Sbjct: 262 ------NGNLVKVGDLNQSILSTFTSSSPKLFKSFLKANP-----------VTEMFTAGR 304

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           S+ +IL + +  F      +   +++ + +  +  +    G+     +V +         
Sbjct: 305 SSREILDLAN-FFVDYVRREHPLKEARSALAEQMIKEVDKGSSPYNPKVDTY-------- 355

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                  F    ++     +   I                   +    K   VL  K   
Sbjct: 356 ---GIKTFIEETEDKELERMGSFI---------------EAFSKKYPDKKAAVLFPKNFQ 397

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                 + +  +  +++    ++  + T       +  L  F+    D+   + +++  L
Sbjct: 398 IEKAGRVLKRKQVKFQVLADISENLLETLEF----MGDLLAFLSKPFDNRRLITLIQGHL 453

Query: 446 F-------------NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
                              ++  I  +R++     ++          K    +K + E  
Sbjct: 454 MEGIEGKEFQEFIPYLKGINLENIFYRRNDLNIPEKFTTASWWINFEKNIKKLKLLLEFP 513

Query: 493 HIAQF---CSPHDFFTLILGAKKGRQQFISRFGNEVIDV-LDEFLNFTLRNEQNSYSSLQ 548
             +         D ++         ++                  + +L  +++  S   
Sbjct: 514 QNSLEKLLLFIGDIYSFEADQLLLIEKISLDLKRIFKLNPRWTLFDLSLEMKKSRGSEFT 573

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS-----HKHI 603
                L +   +           + + T H +KG+E  +V+L +  S  F      + + 
Sbjct: 574 ----YLAKAVESETEELPKEKYNITLTTYHKSKGMEWDMVWLFNVNSDSFPVYLSDNDYG 629

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           ++ ++               +    N    ++    K     E  RLLYVG+TRA + L+
Sbjct: 630 RQQYLKEPYVYPGDYLEDEFRKTFINKKYENITLKRKSERISESIRLLYVGITRAKEYLV 689

Query: 664 ICKHSNTS 671
           I  + ++ 
Sbjct: 690 ISCNGDSD 697


>gi|313837611|gb|EFS75325.1| HRDC domain protein [Propionibacterium acnes HL037PA2]
          Length = 719

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/571 (14%), Positives = 157/571 (27%), Gaps = 164/571 (28%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  KK+ CV+D +D+++    LL +      I  ++     H ++DE QD S
Sbjct: 200 VGRVLAGYEAVKKERCVIDLDDILLCAVGLLVQH---RDITEEVRVRYQHFVVDEYQDVS 256

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA P  +L           
Sbjct: 257 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGARPDYLLNFVAD------ 300

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RS+ +I+ + ++V      ++                      V 
Sbjct: 301 --HPGAKRIDLVRNYRSSPEIIRLANEVLVNRMTSEE--------------APEHGRGVT 344

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L  +  S  +       +               +  A  IA  + +              
Sbjct: 345 LVSRGRSGPEPVYQALGDD--------------ASEAAAIAMWVESRHAAG--------- 381

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            +   +I VL R       +            I  +        D   ++  L AL R +
Sbjct: 382 -VPWSEIAVLYRVNSQAAHLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALVRLV 436

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                D      L +     +                  +     A  G    +   + +
Sbjct: 437 A----DEPGADPLSTFDRVLT-----------------AQGWSVIAPGGAGDVRQRWESL 475

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +A                                              +  ++L+
Sbjct: 476 QALHDLAISLV-----------------------------------------NDGTTTLE 494

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            L +   +   T     +   + V + T+H +KGLE   V L      +           
Sbjct: 495 GLAAMFSRRTAT---QEAPVGDGVTLATLHASKGLEWDAVALYGMSDTMVP--------- 542

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 543 --------------------------FIMVETPAELASERRLLHVGVTRARRNLWVSYSC 576

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +  N  +     +   +  +    ++  + +
Sbjct: 577 SGGNRDRQGISRFLRGLPGTREVTDKPPRHR 607


>gi|226323303|ref|ZP_03798821.1| hypothetical protein COPCOM_01075 [Coprococcus comes ATCC 27758]
 gi|225208493|gb|EEG90847.1| hypothetical protein COPCOM_01075 [Coprococcus comes ATCC 27758]
          Length = 404

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 111/379 (29%), Gaps = 52/379 (13%)

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + KD  +L R    + +             +               IKDL+A  + 
Sbjct: 1   MEKREYKDFAILYRTNAQSRIFEEKM----VVSNVPYKIVGGVNFYARREIKDLLAYLKT 56

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFAN-----CGISKF 481
           + + +DDL+   ++  P        I ++         + YE I    +       + K 
Sbjct: 57  VDNGKDDLAVRRIINVPKRGIGLTTIGRVQDYATEREISFYEAILAAGSVPGIGRALGKI 116

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLR 538
           +     I       +  S  +    I+ A    ++  +    E     + ++E  N  + 
Sbjct: 117 ESFAALIEHFKAEGERMSVAELMDEIIDATGYVEELQADSDEEAESRLENIEELRNKIVA 176

Query: 539 NEQN-----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            E++       S+L   + ++         +     + V +MT+H+AKGLE P V+L   
Sbjct: 177 YEESCEAEDEKSTLSGFLEQVALVADID--SLDEETDYVVLMTLHSAKGLEFPHVYLAGL 234

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +F                                     I     +  EE  RL YV
Sbjct: 235 EDGIFPSYMT--------------------------------ITADDPAELEEERRLCYV 262

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           G+TRA + L +          ++        + +   +      +       ++  ++  
Sbjct: 263 GITRAKENLTLTCARRRMVHGETQYNKMSRFLKEIPLSLLSTGALFKKEQTEEEPKVSTY 322

Query: 714 WSTHHPENTPLEREETIKQ 732
                   T         Q
Sbjct: 323 RQAKQAFATKAFAATKPAQ 341


>gi|291562493|emb|CBL41309.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [butyrate-producing
           bacterium SS3/4]
          Length = 571

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 132/365 (36%), Gaps = 29/365 (7%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPT--------ILKKAQTLQQASQTQCIEERFS 67
           + +D+       +  + +   L+ E   P          ++  + L++A   + I E   
Sbjct: 220 LIQDVKRQAEEFLDGLYEAADLAAEEDGPQAYAPMLAEDIRGMEELREAGTYREIAECLE 279

Query: 68  LLSSFFLT----QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            L    L     +   P+K          + D  +K+K             +     +  
Sbjct: 280 ELKFGRLAAVRGKNVDPEKKEQAAAYRNLAKDGIKKMKALYLPGDIDEVFADLDACREPI 339

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK---RDVSAWIRYKIDQEINHI 180
           L  L LA+  +A ++EAK++  ++DF DL     ++L           +  ++ +    I
Sbjct: 340 LMLLELAEEFSAKFQEAKEEKNLVDFNDLEHFALEVLTGGSLDHKPGLVADELSEIYEEI 399

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QD++ +Q  +I  ++ +             +F VGD KQSIY F  A+P+  L +
Sbjct: 400 LVDEYQDSNEVQETLIHCVSRE-------RFGTPNVFMVGDVKQSIYKFRLAKPELFLEK 452

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                K        +  IEL  +FRS  ++L+ ++ VF      Q  +   T        
Sbjct: 453 YESYGKE----DGLYQKIELHKNFRSRPEVLSSINDVFYRIMTKQLGNIKYTDDAALYPG 508

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                  V    +      +  +P    +    +     ++    AR IA  I    G  
Sbjct: 509 AEFPALPVDGQAKTEVLLLNTGDPL---FDGMDEEKADYTAKEAEARLIAGEIKKTHGPG 565

Query: 361 TIFSN 365
           T   +
Sbjct: 566 TRDED 570


>gi|148263902|ref|YP_001230608.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
 gi|146397402|gb|ABQ26035.1| UvrD/REP helicase [Geobacter uraniireducens Rf4]
          Length = 620

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 97/614 (15%), Positives = 183/614 (29%), Gaps = 127/614 (20%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQD------EFIKIRDRFNTYKMFKSTLASL--TLAKY 132
           +K I+ + + +  P L ++L ++ D               +  K    T       L K 
Sbjct: 114 RKEILHKAVLQ-DPLLSDELDRAGDAKARNKRLDDWLQGISWVKAHPITCEFPTDDLDKR 172

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y+   +     DF+DL++    LL      A    ++      + IDE QD +  Q
Sbjct: 173 VIETYDAGLRACDAYDFDDLLLLAYRLLSSYPKIADFYRRL---YKFVCIDEAQDLNEAQ 229

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + V+ +L  + F         + +  VGD KQSIY F+ + P  + R +           
Sbjct: 230 YAVLTALCGEDF---------KNVLMVGDPKQSIYGFNTSSPDYMWRFRDEFGAG----- 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                IEL  +FRS++ ++ V   +                      +++   G V +  
Sbjct: 276 ----EIELTENFRSSSAVVQVARSL---------------EPHYLVEAQLPIPGAVSVLV 316

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            +    +                          A ++   I  +I +      G    + 
Sbjct: 317 GIDETDE--------------------------AHKVVDEIQRLISSGHEDIEGN---VT 347

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL-GRFILSQ 431
             +  +L R R     I    +       IS          +  A  D   L  R + + 
Sbjct: 348 PSNCAILGRTRYALMAIETELKE----RGISYYKRLTANHENESATVDEFQLALRVLANP 403

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D L    + K            K     +E E    +          +   ++  I  +
Sbjct: 404 RDRLHLTALAKKWKL-----SEPKGPAPANEQEVRLIFSAMANVAKEGRASAIVDAIDAV 458

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
               Q     D    I   +             + + L        +  ++  ++ + + 
Sbjct: 459 ARQTQRL---DLMLGIKSLRAFADSLPEVERLVIYEDLAVLQQEWDQYLRSDGAA-RTIA 514

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             +        +    + + V ++TVH++KGLE  VVF+      VF             
Sbjct: 515 GFMSSKALGATQQA--SRDGVALLTVHSSKGLEFDVVFIAGMADGVFP------------ 560

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                 D     KK    E  R  +V +TR+   L +       
Sbjct: 561 ----------------------DYRAQGKKKEMAEEARNAFVAVTRSKRLLYLSFPKRRM 598

Query: 672 ---NEKKSNQRTWY 682
               ++K  Q + Y
Sbjct: 599 MPWGDEKRQQPSCY 612


>gi|306835518|ref|ZP_07468532.1| excision endonuclease subunit UvrD [Corynebacterium accolens ATCC
           49726]
 gi|304568575|gb|EFM44126.1| excision endonuclease subunit UvrD [Corynebacterium accolens ATCC
           49726]
          Length = 684

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 92/737 (12%), Positives = 189/737 (25%), Gaps = 166/737 (22%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A+   +    Q   +    L            +++          D+  +++ 
Sbjct: 83  AQTFHAAARRQLKYFWPQVAGDLPWTLLDNKFPLVARAVRSVGLDNSKDMIRDVLAEIEW 142

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCV--LDFEDLIINTNDL 159
           ++   +   D  +       T  +           YE+AK    +  LDF+DL+++    
Sbjct: 143 AKSALVSAEDYESVIAETDRTAPADAAKVAEAFRRYEKAKATPDMMHLDFDDLLMHIAGA 202

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           ++       I     ++    ++DE QD + +Q  V+ +   D             L  V
Sbjct: 203 IEN---VPAIAETFREQYRTFVVDEYQDVTPLQQRVLNAWLGD----------RDDLTVV 249

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF+GA P+ +L   R             +I++L   +RST  +  + ++V  
Sbjct: 250 GDANQTIYSFNGASPEYLLNFSRSYP--------DGTIVKLQRDYRSTPQVTDLANRVIG 301

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                                       ++L        +                    
Sbjct: 302 KATGR------------------AAGTRLELQGMREPGPEPTFK--------------AY 329

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            S    A+ +A  +  ++             + A +I +L R    +            D
Sbjct: 330 ESEENEAQEVAGQVLTLLNQG----------VPASEIAILYRINAQSEQFEQAL----AD 375

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +               I + + +      ++D       +                  
Sbjct: 376 AGVVYQVRGGEGFFRRPEILEAIRVLIAATRRDDLPEDPVAIA----------------- 418

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                   E          ++ +   + ++ L+              I+           
Sbjct: 419 ---RAAFVELGLSATEPQGAQARERWQSLNALVG---------LIEKIV----------- 455

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                               E      L  ++ EL +     +         V + TVH 
Sbjct: 456 --------------------ESTPGIDLNGVLGELRRRSTDKQAPAMEG---VTLATVHA 492

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFLV    ++    H  K                                  
Sbjct: 493 AKGLEWDAVFLVGLSEKLMPINHAIK---------------------------------A 519

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                EE  RL YVG+TRA + L +      +   ++++     +   +   +      +
Sbjct: 520 GNEQIEEERRLFYVGITRAREHLALSWALAKTAGSRASRERTRFLDGIAPGVESAAGSGR 579

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
                          +         E  E          +        + +    Y++  
Sbjct: 580 SRRPKRCRVCSGVLETPAEKVIGRHEDCEGNGDDEVFSALRSWRAQVAREEKVPAYVIFT 639

Query: 760 STIDTKGKTNLESLLSD 776
                     L    ++
Sbjct: 640 DATLQAISEELPVDEAE 656


>gi|326443254|ref|ZP_08217988.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
            27064]
          Length = 1238

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/548 (12%), Positives = 151/548 (27%), Gaps = 86/548 (15%)

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-------------------EYIQKF 473
            D  + + +L SPL      D+ ++     + E                      E +   
Sbjct: 591  DTGTALALLTSPLGGMDAADLRRLGRALRDEERAAGNRVPPPSDELIARALAEPERLVTH 650

Query: 474  ANCGISKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFIS---------RFGN 523
                    Q +   +     + +   +  D    +        +            R  +
Sbjct: 651  DRTYAFGAQQLGGLLRHARELLERGGTAEDALWALWDGTGWPARLERAALRGGAAGRNAD 710

Query: 524  EVIDVLDEFLN-FTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTA 580
              +D +    +      E+   +     + E++          A  +  + VR+MT H +
Sbjct: 711  RDLDAVCALFDTAARAEERTGGAGALNFLEEIDAQDIAADTLSARRSRPDAVRLMTAHRS 770

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE  +V +      ++     +   +        G+   +                  
Sbjct: 771  KGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSPG--------------- 815

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM------------VYDS 688
             +   E  RL YV  TRA ++L++      +++     R   ++               +
Sbjct: 816  -ALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLAELGVEPKDVTGRPRRPLA 874

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP-- 746
                    +    +                      + E               L  P  
Sbjct: 875  VAALVAELRATTVDPDASPALREAAARRLARLAALTDEEGLPLVPAAHPDRWWGLHEPTH 934

Query: 747  ---IKNDINEPYILNPSTIDTKG--KTNLESLLSDN--------QTFNRGLIIHKLL-QV 792
                  D + P  L+ S +D       +L+  L                G ++H L  +V
Sbjct: 935  SHAPLRDRDHPVTLSGSALDQLAGDGCSLQWFLGREVKADAPATAAQGFGNVVHVLADEV 994

Query: 793  IFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY 846
                        +            +A     +E ++   ++ R L   +M       + 
Sbjct: 995  ASGRTPADLAVLMERLDSVWDGLAFDAPWKSQQEKEHARAALERFLRWHVMDRGGRTTAA 1054

Query: 847  SEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
            +E      +   +  + I G +D++       +++ ++KT    P   E        QL+
Sbjct: 1055 TEHPFDVTLEAGEYAVRIRGSMDRVERDAQGRVYVVDFKTGKQAPTAREVDR---HPQLA 1111

Query: 906  IYEKILKD 913
            +Y+  +++
Sbjct: 1112 VYQLAVRE 1119



 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 116/383 (30%), Gaps = 39/383 (10%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L      Q +  + +    +       L  A+ L+  S  +       
Sbjct: 68  AAVELRDRMALRLGGARGPQATTFHSFCYALVRAHQDADL-FAEPLRLLSGPEQDVMVRE 126

Query: 68  LLSS-FFLTQKF--------TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+    L              +  + T+    +   +      ++   + +  R     
Sbjct: 127 LLTGQLDLEADGFDGHRWPDELRACLTTRGFADEVRAVL-----ARSRELGLGPRSLARF 181

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++       A    A Y +      VLD+ +L+     L ++   +           +
Sbjct: 182 AARTGRPDWRAAASFLAEYLDVLDMQGVLDYAELVHRAVLLAERAGPAPDF------PYD 235

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + +DE QDT   Q  ++ +L              RTL A GD  QSIY+F GA+   +L
Sbjct: 236 TVFVDEYQDTDPAQVRLLTALAG----------GGRTLVAFGDPDQSIYAFRGADVNGIL 285

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                 +      G+   +  L  S RS A +L     +       +  ++         
Sbjct: 286 DFPATFR---HPDGRPADVAVLTTSRRSGAALLGATRLLTRRMPLTRLPADKVRAHRELA 342

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---ARRIAYTISN 355
           ++R G  G V+ +       +              D +P    A ++   AR I      
Sbjct: 343 ATRPG--GRVETYTFPTPSAELDNVADILRRAHLEDGVPWHGMAVLVRAGARSIPAVRRA 400

Query: 356 MIGTDTIFSNGKKRVIQAKDILV 378
           +             V    +  V
Sbjct: 401 LTAAGVPLETDGADVPLRHEPAV 423


>gi|54026512|ref|YP_120754.1| putative helicase [Nocardia farcinica IFM 10152]
 gi|54018020|dbj|BAD59390.1| putative helicase [Nocardia farcinica IFM 10152]
          Length = 1255

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/494 (13%), Positives = 145/494 (29%), Gaps = 60/494 (12%)

Query: 502  DFFTLILGAKKGRQQFISRF------GNEVIDVLDE---FLNFTLRN-EQNSYSSLQELI 551
            D    +  A +  ++++++       G +    LD      +      ++   + ++  +
Sbjct: 726  DVLWALWTASRLERRWVAQSERGGAVGMQADRDLDAAVGLFDAAAAYVDRLPRAGIEGFV 785

Query: 552  SELEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              L Q   P   R  +    EV +++ H A G E  VV +      ++ +   +   +  
Sbjct: 786  EYLSQQEIPHDTRPLTTPGEEVALLSAHAAAGREWDVVAVAGVQEGIWPNPRPRGTLLHT 845

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                D    +                         E  RLL V  +RA   L++    + 
Sbjct: 846  EDLVDLLAGVGGAGEHV----------SRSAPILAEERRLLLVACSRARRSLLVTAVESV 895

Query: 671  SNEKKS-NQRTWYDMVYDSFHNDERVKKIKLTNSIN--KDEWIAYEWSTHHPENTPLERE 727
            + ++     R   +++      +  V  +                  +   P   P  R 
Sbjct: 896  TGDRDLVPSRFLAELLGHDEDGEPGVLPVVDPGRALVMHSLVAELRGAVCDPTADPERRR 955

Query: 728  ETIKQLMDEQKIPKKLFSPIK---------------NDINEPYILNPSTIDTKGKTNLES 772
                QL        +  +P +                + +    L+PST++      L  
Sbjct: 956  RAAFQLARLADAGVRGTAPEEWYGTAELSCADPLWSEEDDAVVALSPSTVEQLRTCPLRW 1015

Query: 773  LLSDNQT-------FNRGLIIHKLLQVIFTLPEHKRKNFIT----SYCTKNAKLWPAKEY 821
             L  +           +G ++H L+Q +       +                     +E 
Sbjct: 1016 ALERHGGTDGDNPHAVKGSLVHTLVQALAGRVPEAQVRAALDKAWRAIDPGDGWHSRQER 1075

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD---IIISGRIDQISISQ-QN 877
            +     +   L     T      +  EV V   +    +D   + I GRID++   +   
Sbjct: 1076 RRTEAMLETFLAWVRNTRGELTQAGVEVPVDCVLPARSEDERPVRIRGRIDRLERDEFGR 1135

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK--DSYP-NKSLVCLLIYVSEPKVFI 934
              I + KT  +    I        AQL+ Y+         P  +     L+YV++P    
Sbjct: 1136 FVIVDVKTGKNP---ISKQAAADHAQLATYQVAAASGALDPEGEPGGARLVYVAKPHTKE 1192

Query: 935  IPQNKLNKAFAEIS 948
                ++       +
Sbjct: 1193 GATQRMQDPLDAAA 1206



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 78/292 (26%), Gaps = 53/292 (18%)

Query: 9   LNESYELIYKDLWPLPYFQVSDINKYVS---LSMETGNPTILKKAQTLQQASQTQCIEER 65
              + E + + L    +  +             + TG        + L+           
Sbjct: 109 PGATTEPLVRTLHSYAFSVLRRHASAHGNPPPRLLTGAEQDAVLREMLRG---------- 158

Query: 66  FSLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
              L+           + +     ++  +  L++ + ++ +    +          +   
Sbjct: 159 --DLADIAEGATGLWPQRLHAALGLDGFAQQLRDLMLRATER--GLGPEDLERLGREHDR 214

Query: 125 ASLTLAKYLNAHYEEAKKKN------------CVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                A      YE+A                  LD  +L+    D L      A +   
Sbjct: 215 PEWVAAGRFLLRYEQALLLRWSVGVEAPEATAPALDAAELLGACLDALATD---AELLAA 271

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
               I ++ +D+ Q        ++R             ++  T    GD  Q++++F GA
Sbjct: 272 ERARIRYLFVDDAQHLDPQAATLVR----------VVGAAAHTAVVAGDPDQAVFTFRGA 321

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           + +                      + L  + RS   +     ++ +    A
Sbjct: 322 DARFAAD----------PGAPADRRVVLRENHRSGPSVRLAAARIAAKLPGA 363


>gi|50842794|ref|YP_056021.1| putative DNA helicase II-like protein [Propionibacterium acnes
           KPA171202]
 gi|50840396|gb|AAT83063.1| putative DNA helicase II homolog [Propionibacterium acnes
           KPA171202]
 gi|315105911|gb|EFT77887.1| HRDC domain protein [Propionibacterium acnes HL030PA1]
          Length = 706

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/557 (14%), Positives = 149/557 (26%), Gaps = 164/557 (29%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA        +        
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGA--------RADYLLDFV 286

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 287 ADHPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I VL R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAVLYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPDGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           EL +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 ELAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMV 685
           +  N  +     +   +
Sbjct: 565 SGGNRDRQGISRFLRGL 581


>gi|307721378|ref|YP_003892518.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
 gi|306979471|gb|ADN09506.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294]
          Length = 693

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/590 (13%), Positives = 177/590 (30%), Gaps = 96/590 (16%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +   +   +E  KK+   L+F DL++N  ++     +              +L+DE QDT
Sbjct: 170 IYADIVDEFEALKKEYGFLNFNDLLLNFREMCANDKL----------GYKEVLVDEYQDT 219

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q  +I ++            +P +LF VGD  QSIY+F+GA+   +           
Sbjct: 220 NALQGTLIDAM------------NPPSLFCVGDYDQSIYAFNGADIGIIGSFTTKYP--- 264

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                   +  L  ++RS+  IL++  KV    E       + T     ++ ++      
Sbjct: 265 -----DAVVHTLTKNYRSSVPILSLASKVIEHNERIYPKKLEVTRIYDAQAPKL------ 313

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM-IGTDTIFSNGK 367
            L    +              ++  + +      +  A  I   +  + I          
Sbjct: 314 -LAFDELFDQYHAMAAMIRDTSTPREEIAVIFRNNSSADGIEVGLRELDIPCKRKGGTSF 372

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               + K IL L     +   +       +    I         +      +  +  G +
Sbjct: 373 FDSREIKAILDLYTLLVNESDMMAFIHLFEFARGIGSAMAKELYIALKALGQGSIFYGLY 432

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIF--------KICTQRHETETVYEYIQKFANCGIS 479
              +     F     +      +D +         K+  +    +       K      +
Sbjct: 433 APDESMKNPFEKRKLNHQLGLFDDFLELGAVGKYAKLDFEAKFMKNPVLKHPKLTKESAT 492

Query: 480 KFQHVIKYIHELIHIAQFCSP------HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
              +      +L  I Q  +          +  I      ++  +     +     +  +
Sbjct: 493 FLHNFYLLFRDLKGIKQPKTIVKKIANSALYMYIADVLATKRATLKDGSIDEKQKTEALV 552

Query: 534 N-----FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                   L      Y+  +  ++ +      + +        V +++VH +KGLE   V
Sbjct: 553 RIQRKVLLLEELAKPYAEHERFLNAMILGSSDLTQ-----GEGVNLLSVHASKGLEYKEV 607

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           +++D     F ++                                      +  + +E  
Sbjct: 608 YVIDLMDGRFPNR----------------------------------KLMQRGGSLDEER 633

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
           RL YV +TRA D L +        +K++   + +         DE  + +
Sbjct: 634 RLFYVAVTRAKDILYLSYAKYDKIKKQNFMPSQFLYEAGLVPKDEAYRAM 683


>gi|56419918|ref|YP_147236.1| hypothetical protein GK1383 [Geobacillus kaustophilus HTA426]
 gi|56379760|dbj|BAD75668.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 807

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 103/557 (18%), Positives = 172/557 (30%), Gaps = 92/557 (16%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           + K +    +E KK    L+  DLI     L            ++D  I ++ +DE QDT
Sbjct: 296 VMKRVIRELDEQKKTEETLEISDLISRLASL------KNLSSDQLDLPIRYLFVDEFQDT 349

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
              Q   I  L E +            LF VGD KQSIY F GA+    L+ ++  +   
Sbjct: 350 DESQTAFISWLAEKY---------GCQLFVVGDVKQSIYRFRGADYTAFLQLQQQLETA- 399

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               Q +    L  ++RS   +LT ++ +F                              
Sbjct: 400 ---NQVYKEYSLQKNYRSAPTLLTQLNALFQK---------------------------- 428

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
             W +VV +       +            ++   +             +           
Sbjct: 429 --WTKVVEKFPFDDTDKLIPAKEEGCKKEEKGLVA-------------LDMGDAALKRLL 473

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           R +  KD+ +LVR  ++   +         +                  +++   L R  
Sbjct: 474 RCLYQKDVAILVRSNREVLEMVDRVE----NMGFFCEATMSGTFYRSFPVREFYLLIRRF 529

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-HVIKY 487
                        +S            +     ET  + + +Q F N    + Q +    
Sbjct: 530 THPYVPKDRYLFHQSSYGENELTIAKVLSAYTPETSFILDLLQTFDNMERWECQWNTSSA 589

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---------------FGNEVIDVLDEF 532
           +  L +I     PH+ F       +   Q  SR                  E    LD  
Sbjct: 590 LAVLQNIIDEVRPHEVF-----RLRYYNQLRSRFPDGDVEMHRKEAIAKMKEYKMNLDRL 644

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPV 587
           + F  +   + ++S  +L   L     T    +        ++ +++MTVH AKGLE   
Sbjct: 645 IFFIKKEFGDFHASFYDLEKFLAIKMATDTSENELKITRGVNHRIKVMTVHKAKGLEFDY 704

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V +  T            M I        G  I     +  NN  ++     KK    E 
Sbjct: 705 VLMPLTRHPFIKQGKTDVMLISDRAQWKLGYSIHWGDMEFENNYYNEYAGSEKKELIGEE 764

Query: 648 NRLLYVGMTRASDQLII 664
            RLLYV +TRA   + +
Sbjct: 765 ARLLYVALTRARKAVYV 781


>gi|313838399|gb|EFS76113.1| HRDC domain protein [Propionibacterium acnes HL086PA1]
          Length = 706

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/557 (14%), Positives = 149/557 (26%), Gaps = 164/557 (29%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA        +        
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGA--------RADYLLDFV 286

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 287 ADHPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I VL R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAVLYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPDGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           EL +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 ELAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMV 685
           +  N  +     +   +
Sbjct: 565 SGGNRDRQGISRFLRGL 581


>gi|227499421|ref|ZP_03929532.1| DNA helicase II [Anaerococcus tetradius ATCC 35098]
 gi|227218483|gb|EEI83726.1| DNA helicase II [Anaerococcus tetradius ATCC 35098]
          Length = 597

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/545 (14%), Positives = 151/545 (27%), Gaps = 121/545 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE  K KN  +DF+D+ I    L+   +    +   I  +  +I +DE QDTSLIQ
Sbjct: 157 IYRAYENFKIKNFYIDFDDMQIIALKLISNDE---RLLKSIRNKYKYIQLDEGQDTSLIQ 213

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +++I  +                L  V D+ QSIYSF  ++   +L  K           
Sbjct: 214 FKIIEKIAA----------PSNNLMIVADDDQSIYSFRASDVAYLLNFKNTYH------- 256

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               II +  + RS A+I+ +      I +        +  +              + ++
Sbjct: 257 -DAKIIVMDENHRSGANIVNLSKNFIEINKFRYKKDLFTNNSFTSNVKLKVVKNVKEEYK 315

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            +    D                                                     
Sbjct: 316 FIKESLDWNKKN------------------------------------------------ 327

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
                +L R       +         D+ +               I+D+  +  F     
Sbjct: 328 ----AILFRNNIQAINLISFLMEDGIDFSVQF---SDLNFFKSKIIEDIFNIIEFSEDFY 380

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
               F  +        +++D+ K+      +    + Y     +  +       K +  +
Sbjct: 381 RTDLFGEIYYKISSFLTKEDVEKLAFKSLGQDVFQHLYGMDLEDYKLEALITKEKQLKHI 440

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSSLQE 549
             +    S     + I      +    +       +    D ++   +       + L  
Sbjct: 441 RKL----SLDKKISFIYKYMDYKTYINNFSKRYREEIVNKDLYIESIVNF----TNGLSN 492

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
                ++     K   S + N + + T+H +KGLE   V++++     F           
Sbjct: 493 KEEFDQKIAYLDKYCKSQSSNLI-LSTIHRSKGLEYDNVYIINLVKNEFPMIVDN----- 546

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                           +  EE  RL+YV MTRA   L I     
Sbjct: 547 ----------------------------EDYANKLEEERRLMYVAMTRAKSNLNILTIKK 578

Query: 670 TSNEK 674
             +  
Sbjct: 579 RDSNT 583


>gi|268323490|emb|CBH37078.1| putative ATP-dependent DNA helicase [uncultured archaeon]
 gi|268326506|emb|CBH40094.1| putative ATP-dependent DNA helicase [uncultured archaeon]
          Length = 615

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/540 (15%), Positives = 157/540 (29%), Gaps = 122/540 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L  +Y++  +    +DF+DL++    LL     +A +     +    I IDE QD +  Q
Sbjct: 175 LYQNYQDILRSQNAIDFDDLLLLAYSLLVNYPKTAAL---YRRSFFAICIDEAQDLNNAQ 231

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++++ +L          +     +  VGD  Q+I+ F+G+ P  +    +   +    A 
Sbjct: 232 YQLLLALV---------NGEFTNIMMVGDPNQAIFHFNGSSPDYMD---KHFVRDFNPAP 279

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 EL  ++RS+  +L+   K+    E+  G  ++               G  ++  
Sbjct: 280 -----FELNENYRSSKAVLSAAKKIIPDAEDIAGTVKE---------------GLFEIHC 319

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV-I 371
                                         +  AR +   I  +I + T   +      I
Sbjct: 320 L--------------------------EDENAEARWVVNKIKGLIASKTHDEHDDIEGDI 353

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             + I VL R +     +  L     N            I  +   +K      R  L+ 
Sbjct: 354 TFEKIAVLARNKYVFNKLESLLDE--NGLLFYYKMTPGTIQFESDLMKTFDLALRVKLNP 411

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           +D L     L   L     +            E +   + +          +  + +   
Sbjct: 412 QDTLHRNR-LFKMLNIAPVETTELQVVASKVNEGMERQLLEVVIRLNEDGSNFKRELESF 470

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQEL 550
                           +     R+  ++         ++E L   L    +    SL + 
Sbjct: 471 KGDIT-----------IQDDNERRMVLND--------IEELLKHWLNYAKKTDNKSLPQF 511

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            + +              HN + + TVHT KG E  +VFL+    + F      +   + 
Sbjct: 512 RNAMALGQTHPLAQ----HNGITLSTVHTMKGQEFDIVFLMGMDDETFPDYRAIRSGGI- 566

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                              +    LYV  TRA   L I      
Sbjct: 567 --------------------------------ELTQEKNNLYVAFTRAKRFLYITWPQKR 594


>gi|326795157|ref|YP_004312977.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1]
 gi|326545921|gb|ADZ91141.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1]
          Length = 779

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 105/679 (15%), Positives = 197/679 (29%), Gaps = 130/679 (19%)

Query: 29  SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS--FFLTQKFTPQKNIIT 86
           + +N  +  +      T       L    + + +  +  L++    F+      + N+I 
Sbjct: 78  AQLNGVMESARLPDVMTFHSFGMRLCNRLERKGVLSQAKLVTDEFSFVKLIREARNNLIR 137

Query: 87  QEINKKSPDLKEKLKKS---QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
           Q       D ++ L+ +    D      +  +         A       L    E+ +K+
Sbjct: 138 QGEEITLQDERDWLEDALLYFDYVKASVESEDVVYENLKWSADRRFFPKLFIEVEKLRKR 197

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           + +  F DL+ +  D + + DV      + +     ++LIDE QD +  Q+E+++   ++
Sbjct: 198 SNIRFFSDLLKDPYDAISRMDVEQIAYVRQLVPGYQYLLIDEFQDINPCQFELLKGFYKE 257

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                           VGD +Q IY + GA P      +    +         +  +L  
Sbjct: 258 SAQW----------MIVGDTQQCIYEWRGASPDI---MQTQFDQEFP----SVATYKLSQ 300

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           SFR    I  +   V S   +               +  IG+    ++            
Sbjct: 301 SFRYGHAIGLMASGVISENGD--------------DTLVIGRGTGTEVGFAKSPLVGKSA 346

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             + + W    + L                                      D  +LVR 
Sbjct: 347 LTELKDWYEKGNKLE-------------------------------------DCAILVRL 369

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
             D        +      +I    +    L ++  I+ LM+    +    +D S    L 
Sbjct: 370 YSDMVP----LQLALMHKQIPYQLHGDSPLWENRQIRMLMSYLAVMAGGLEDQSVFFSLN 425

Query: 443 SPLFNFSEDDIFKICTQRHETET------------VYEYIQKFANCGISKFQHVIKYIHE 490
              +  S   +     Q+    T            + +   +       K Q    ++  
Sbjct: 426 DVEYLLSVPALAGAYQQKQALITKAKQAPHLIPQLIEQLASEQEGWRAKKLQERADWLRM 485

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISR-----FGNEVIDVLDEFLNFTLRNEQNSYS 545
           L   A+  SP D     +      + F S         E ++  + F+ +      N+ S
Sbjct: 486 LPTFAK--SPADGLKSTIEKLGIYRYFESTSSKDIQAQEKMETCEAFIAYVKGVGSNAGS 543

Query: 546 SLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            L  L S       T          S  +  V +MT+H +KGLE  +V L       F  
Sbjct: 544 ILAALTSLCHAGNQTKGYDSGASQASQANGGVHLMTIHKSKGLEFDLVMLPGLREGRFP- 602

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                              I    K   +   RL YV +TRA  
Sbjct: 603 ---------------------------YYEEDVSDIDLQAKKNMQAERRLFYVAITRARR 635

Query: 661 QLIICKHSNTSNEKKSNQR 679
           +L+I +  +          
Sbjct: 636 RLVILESPDAKETTTLTAG 654


>gi|282853724|ref|ZP_06263061.1| HRDC domain protein [Propionibacterium acnes J139]
 gi|282583177|gb|EFB88557.1| HRDC domain protein [Propionibacterium acnes J139]
          Length = 706

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/571 (14%), Positives = 154/571 (26%), Gaps = 164/571 (28%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA    +L           
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGARADYLLNFVAD------ 288

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 289 --HPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I VL R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAVLYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPEGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +L +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 QLAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +  N  +     +   +  +    +   + +
Sbjct: 565 SGGNRDRQGISRFLRGLPGTGEMTDNPPRHR 595


>gi|314914871|gb|EFS78702.1| HRDC domain protein [Propionibacterium acnes HL005PA4]
          Length = 706

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/557 (14%), Positives = 149/557 (26%), Gaps = 164/557 (29%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA        +        
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGA--------RADYLLDFV 286

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 287 ADHPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I VL R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAVLYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPDGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           EL +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 ELAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMV 685
           +  N  +     +   +
Sbjct: 565 SGGNRDRQGISRFLRGL 581


>gi|313792367|gb|EFS40466.1| HRDC domain protein [Propionibacterium acnes HL110PA1]
          Length = 706

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/557 (14%), Positives = 149/557 (26%), Gaps = 164/557 (29%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA        +        
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGA--------RADYLLDFV 286

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 287 ADHPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I VL R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAVLYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPDGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           EL +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 ELAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMV 685
           +  N  +     +   +
Sbjct: 565 SGGNRDRQGISRFLRGL 581


>gi|310286974|ref|YP_003938232.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium
           bifidum S17]
 gi|309250910|gb|ADO52658.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium
           bifidum S17]
          Length = 1400

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 101/849 (11%), Positives = 229/849 (26%), Gaps = 102/849 (12%)

Query: 31  INKYVSLSMETGNPT-ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89
           ++  +  +M  G+ T + +    ++   Q      +  +           P+  + T+  
Sbjct: 160 LSHAIGNAMIGGSTTTMDEAIGRVRAWDQAFL--AQLDIAIGDTPVPDEAPKAKVPTKNK 217

Query: 90  NKKSPDLKEKLKKSQDEFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
                    K ++ + +     +        + +     LTL       YE  K+   + 
Sbjct: 218 KDTEETFAAKQEEYRAQLRDICVYKCAQLRDVTRRRETLLTLV----EEYEREKRVQNMA 273

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           +F D  I    L+ +      I  +  +   H+L+DE QDTS  Q  ++ +L        
Sbjct: 274 EFSDFTIAAYQLVARFPS---IGERYRRRYTHVLLDEYQDTSTTQAMLLATLFHPQSDAD 330

Query: 208 NTHSSPR---------------------TLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
              SS R                      + AVGD  QSIY++ GA P      ++    
Sbjct: 331 ADRSSSRWREAARSAGGRSKDGVGLSRSAVNAVGDPFQSIYAWRGASPGAFRMFQKDF-- 388

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                        L ++ R+T  +L   + +              T  +R    R G   
Sbjct: 389 ---GMPADAKPYPLSVTRRNTCIVLRAANNL--------------TEPLRIPPRRAGSSL 431

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             ++    +S  D+                  ++ A    + IA                
Sbjct: 432 MREVDVANLSAMDNAAEGTIGVLGFATFGQEADAVARFAKQAIAR---------YRKDAA 482

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                    + VL R +                  ++ +      L +   ++DL+AL  
Sbjct: 483 ATAASDTPHVAVLFRGKTHMAQFAQELE----RAGLTTLVVGYSALLERPEVQDLIALLH 538

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                 D  S + +L +P F    + + ++     + ++   Y     +  I       +
Sbjct: 539 AAADHTDSASLMRLLATPRFGLGSESLTRLAGMAEDLDSQCRYRALVESGIIGSGSDGAR 598

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN-------FTLRN 539
                        P    + ++    G     +    +V  ++ ++ +            
Sbjct: 599 ADDGHDEATV---PTSIDSGLVSEADGGSDIATFADPQVKAIVKQYRDRVPHAVFLIDMM 655

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH----------TAKGLESPVVF 589
            ++   SL       ++               V  +T H           A  L+   + 
Sbjct: 656 MRDDLPSLLSRRGGFDETTSHRIIQAGEVLQRVHAVTNHPLKEVIDAAVRALNLDIDTIV 715

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                +        +    + S+                  +   +         EE   
Sbjct: 716 AQAVKNPSQPVNPTQARSPLQSVAALVDTYTQEIVEGVNPTLRGFMSWVDSLGQIEEDT- 774

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK-KIKLTNSINKDE 708
              V  T A   L+    +           +    V+ S      V+   +       + 
Sbjct: 775 -AAVPDTPADVVLMTIHQAKGLEWDAVAVVSMQSGVFPSNQGGLHVELDAEHPGGGAGES 833

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           W   E+                   +D   +P+       +D     +     ++     
Sbjct: 834 WTPPEYKATVRSWADDPAAVPAPVRVDAGILPRFPHDANPDDAPVETLRALDDVEVIDD- 892

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                  D ++ + G            +      ++  +   +  +   A E +   +++
Sbjct: 893 ---EFYGDLRSKDIG----------DDMDVADPSSWYLTQEEEYGRRLLADERRLAYVAL 939

Query: 829 TRLLENPMM 837
           TR  ++ ++
Sbjct: 940 TRAKKDALL 948



 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/360 (11%), Positives = 88/360 (24%), Gaps = 71/360 (19%)

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
              Q        T  E+   +  W   + +           KL+              +  
Sbjct: 1040 RPQGFFVGDHATEYERDVVEEAWNAPLEEREQGGGPTWPAKLSEETLSKLTGGMSGDSGL 1099

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------- 769
              + P       + L+++  +    F   + +I+         +   G+ N         
Sbjct: 1100 VTDDPDSLLARARMLVEDPDLMPWSFGRGEREIDRYVRRQAEHLLEHGRQNVTALQVRAG 1159

Query: 770  ---------------LESLLSDNQTFNRGLIIHKLLQVIFTL------------------ 796
                                  +     G + H   +                       
Sbjct: 1160 HMTQREERGYWRGLIRPIPRVASPAAEAGTLFHAWAEQFINAYGDGQSIDADGIGAYDSS 1219

Query: 797  -----------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
                           R++ +        K       +  L    R L     +      +
Sbjct: 1220 SIETGTAGTCREPVTRESLLHDLSELEMKSDTLTAKERQLTVWQRRLAESTWSE--RRPA 1277

Query: 846  YSEVSVSGKINCPKKDIIISGRIDQISISQ-------QNIFIFEYKTHHHVPQEIEHIPY 898
            ++E  +   I     D+I++G++D +           +   I ++KT     +  +    
Sbjct: 1278 WAERQIVVSIP-QLGDVIVNGKLDAVFHGGLDANDPTKQYTIVDWKTGRKPRKPQD--IE 1334

Query: 899  THIAQLSIYEKILKDS--YPNKSLVCLLIYV----SEPKVFIIPQNKLNKAFAEISTKIP 952
              + QL  Y  +L      P   +   L Y+       +          +  AE+S+ IP
Sbjct: 1335 HKLVQLDWYRLLLSYIEHVPLDRIDATLYYLSEPDEGARELHARAKTEQEILAELSSGIP 1394


>gi|314986290|gb|EFT30382.1| HRDC domain protein [Propionibacterium acnes HL005PA2]
 gi|314989623|gb|EFT33714.1| HRDC domain protein [Propionibacterium acnes HL005PA3]
          Length = 706

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/557 (14%), Positives = 149/557 (26%), Gaps = 164/557 (29%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA        +        
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGA--------RADYLLDFV 286

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 287 ADHPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I VL R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAVLYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPDGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           EL +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 ELAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMV 685
           +  N  +     +   +
Sbjct: 565 SGGNRDRQGISRFLRGL 581


>gi|314983232|gb|EFT27324.1| HRDC domain protein [Propionibacterium acnes HL110PA3]
 gi|315090106|gb|EFT62082.1| HRDC domain protein [Propionibacterium acnes HL110PA4]
          Length = 706

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/571 (14%), Positives = 154/571 (26%), Gaps = 164/571 (28%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA    +L           
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGARADYLLNFVAD------ 288

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 289 --HPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I VL R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAVLYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPEGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +L +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 QLAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +  N  +     +   +  +    +   + +
Sbjct: 565 SGGNRDRQGISRFLRGLPGTGEMTDNPPRHR 595


>gi|56751600|ref|YP_172301.1| hypothetical protein syc1591_d [Synechococcus elongatus PCC 6301]
 gi|81301324|ref|YP_401532.1| putative DNA helicase [Synechococcus elongatus PCC 7942]
 gi|56686559|dbj|BAD79781.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81170205|gb|ABB58545.1| putative DNA helicase [Synechococcus elongatus PCC 7942]
          Length = 755

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/695 (13%), Positives = 200/695 (28%), Gaps = 101/695 (14%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
           ++  L  +     + +            + +     +  G     + A+ L+++      
Sbjct: 122 DQVSLVSDRRKAQLLRQAIDQWIEANPTLFQQ----LLRGTGFDGELAEQLRRS------ 171

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
               S+L + FL                + +  L  ++K S        DR + + +   
Sbjct: 172 ----SVLRNEFL---------------FELAKTLIPEIKSSGLSPADFADRLSPWPVLGD 212

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
               L +A+ L   Y+   ++  ++DF+D++++   +L         R      I  +  
Sbjct: 213 -YPLLVIAQGLYEFYQVGLQQASLIDFDDMVLSAVRVLDNPQA----RRTWQSSILALFE 267

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREK 241
           DE QD+S +Q +++  L                L  VGD  Q+I S F  A+P    +  
Sbjct: 268 DEAQDSSPLQMQLLERLAPVTT------DQQLQLVRVGDPNQAINSTFTSADPLFFRQFC 321

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               +R        +    P  FR+   +L  V++ ++  ++ +   E +   +     +
Sbjct: 322 EQCDRRQQLVMFDQAGRSSPTIFRAANFVLQWVNRHWAHSDSLRPFREQAIQPVDAEDPQ 381

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           +            + Q ++     +       D     +                     
Sbjct: 382 LNANPEPLGLGLELLQTETTIATVERLQQRLIDLYAANAETQA----------------- 424

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                           +LVR+ +    +            I +         +    +++
Sbjct: 425 ---------------AILVRENRQAHYLRDRLTEPLAKAGIHLWEA-SDRDRNRRIPEEM 468

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           +AL +FI            L+      + D +  +  +      ++   + F      + 
Sbjct: 469 LALLQFIERPHQPDRLRAALQ---VLVNRDRLPALPWEALPAPEIFLGDRLFWPDANPRL 525

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-------QQFISRFGNEVIDVLDEFLN 534
               +   +L+       P      +               Q   + G +    L   L 
Sbjct: 526 LPAQRLCQQLLKARSELPPEQLIPFLALTLHYDGSELATADQLADQLGRQAWSNLS--LG 583

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             L + QN   S       L                +V I+T+H +KGL+   VFL    
Sbjct: 584 QLLADLQNLLES-----DRLTSVETEDPGLALTRSGQVTILTMHRSKGLDWDCVFLPFLE 638

Query: 595 SQVFSHKHIKK----------MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
           +         K             +  L     +             ++  +   +   +
Sbjct: 639 ASQIPGGRSPKQSEAFLGPQPWIAIARLQLRRALQAETGAGVEPFTDLAAAVSEAQALRE 698

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
            E  RLLYV MTRA   L +             Q 
Sbjct: 699 AEEYRLLYVAMTRAKRLLWMASAQQAPRNWTFPQS 733


>gi|25019676|gb|AAL03923.2|U30252_11 unknown [Synechococcus elongatus PCC 7942]
          Length = 755

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 98/692 (14%), Positives = 198/692 (28%), Gaps = 95/692 (13%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
           ++  L  +     + +            + +     +  G     + A+ L+++      
Sbjct: 122 DQVSLVSDRRKAQLLRQAIDQWIEANPTLFQQ----LLRGTGFDGELAEQLRRS------ 171

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
               S+L + FL                + +  L  ++K S        DR + + +   
Sbjct: 172 ----SVLRNEFL---------------FELAKTLIPEIKSSGLSPADFADRLSPWPVLGD 212

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
               L +A+ L   Y+   ++  ++DF+D++++   +L         R      I  +  
Sbjct: 213 -YPLLVIAQGLYEFYQVGLQQASLIDFDDMVLSAVRVLDNPQA----RRTWQSSILALFE 267

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREK 241
           DE QD+S +Q +++  L                L  VGD  Q+I S F  A+P    +  
Sbjct: 268 DEAQDSSPLQMQLLERLAPVTT------DQQLQLVRVGDPNQAINSTFTSADPLFFRQFC 321

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               +R        +    P  FR+   +L  V++ ++  ++ +   E +   +     +
Sbjct: 322 EQCDRRQQLVMFDQAGRSSPTIFRAANFVLQWVNRHWAHSDSLRPFREQAIQPVDAEDPQ 381

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           +            + Q ++     +       D     +                     
Sbjct: 382 LNANPEPLGLGLELLQTETTIATVERLQQRLIDLYAANAETQA----------------- 424

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                           +LVR+ +    +            I +         +    +++
Sbjct: 425 ---------------AILVRENRQAHYLRDRLTEPLAKAGIHLWEA-SDRDRNRRIPEEM 468

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           +AL +FI            L+  +       +        E           AN  +   
Sbjct: 469 LALLQFIERPHQPDRLRAALQVLVNRDRLPALPWEALPAPEIFLGDRLFWPDANPRLLPC 528

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR----QQFISRFGNEVIDVLDEFLNFTL 537
           Q + + + +            F  L L           Q   + G +    L   L   L
Sbjct: 529 QRLCQQLLKARSELPPEQLIPFLALTLHYDGSELATADQLADQLGRQAWSNLS--LGQLL 586

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            + QN   S       L                +V I+T+H +KGL+   VFL    +  
Sbjct: 587 ADLQNLLES-----DRLTSVETEDPGLALTRSGQVTILTMHRSKGLDWDCVFLPFLEASQ 641

Query: 598 FSHKHIKK----------MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
                  K             +  L     +             ++  +   +   + E 
Sbjct: 642 IPGGRSPKQSEAFLGPQPWIAIARLQLRRALQAETGAGVEPFTDLAAAVSEAQALREAEE 701

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
            RLLYV MTRA   L +             Q 
Sbjct: 702 YRLLYVAMTRAKRLLWMASAQQAPRNWTFPQS 733


>gi|266624981|ref|ZP_06117916.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288863124|gb|EFC95422.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 565

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 87/572 (15%), Positives = 176/572 (30%), Gaps = 120/572 (20%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           + I  +++DEVQD    Q E I              +    LFAVGD  Q IYS+ G+  
Sbjct: 29  RNIQWVIVDEVQDCDGKQLEFIDCFM----------TGGAKLFAVGDPNQVIYSWRGSAF 78

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                 K   Q            + LP+++RS+ +IL    + F     A          
Sbjct: 79  NLFYTLKTRYQAA---------ELSLPVNYRSSNEILEAA-RCFQQNGGAL--------- 119

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                                    ++   ++    ++++S  +       A  +A  I 
Sbjct: 120 -----------------------EGTRGGGEKIVVKNHYNSFQE-------ACYLADRIC 149

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +              I   +I +  R +  + ++  +     +  +I      +  + +
Sbjct: 150 ELQKQG----------IPFDEIAIFYRLQSQSKVMEDVF----SKNEIPYEVAVKTGIHE 195

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             A++ L+ L RF+    D  + V +L S  +        K   +  E    +   +K A
Sbjct: 196 IPALEWLLRLLRFLADPADRAAAVFVLSSREYGVGISA--KKAEKLAEESCAWVCGRKEA 253

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI--SRFGNEVIDVLDEF 532
               S+          ++  A+  +  +                  +    E    +  F
Sbjct: 254 QENGSEKAAAPGLFERMVSFARNGAEIEDTNGFYEYFDLDCSLKPNASSYGEDKANVCHF 313

Query: 533 LNFTLRNEQNSYSSL-QELISELEQYPPTIKRA------HSANHNEVRIMTVHTAKGLES 585
           L+      +    SL + L   L                  A  N V++MT+H +KGLE 
Sbjct: 314 LDRMFAFMKAKGFSLPEGLREFLNSAALYGTSRELLPETDGAGENRVKMMTLHASKGLEF 373

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF++     +   +                                         +++
Sbjct: 374 SHVFIIGVNYGLIPLRTKG------------------------------------LDSED 397

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E  RL +VG+TRA + L +  ++N          + Y  +  S     +  +++   +  
Sbjct: 398 EERRLFFVGITRARNYLELSWYTNPDIFGVMAGESRYIRMIPSELVKGQESEMRTGTANL 457

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
           ++     + +  + E      +      M+E 
Sbjct: 458 QELRRQVQMAKENGEKMADREDVAKTDKMEEW 489


>gi|167772731|ref|ZP_02444784.1| hypothetical protein ANACOL_04113 [Anaerotruncus colihominis DSM
           17241]
 gi|167665209|gb|EDS09339.1| hypothetical protein ANACOL_04113 [Anaerotruncus colihominis DSM
           17241]
          Length = 899

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 117/362 (32%), Gaps = 71/362 (19%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY----LNAHYEEAKKKNCV 146
             +  L E+L        + RD        K+ L +   A      L A+Y E  ++   
Sbjct: 564 TAALALVEELCAELGLKKRPRDALAAVSARKNGLTAGKEADEAEQTLFAYYCERLEEYGA 623

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LD++DLI+ T  L ++      +  +  +    +L+DE QD + +Q+ ++R+        
Sbjct: 624 LDYDDLILQTLALFEQ----GALAGQEREPFRRLLVDEFQDINPMQYRLVRAW------- 672

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
              +     LF +GD  Q+IYSF G++P+      R              +I L  ++RS
Sbjct: 673 ---NRDGDELFVIGDPDQAIYSFRGSDPRCFETLARDCP--------DGRVIRLNENYRS 721

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  IL     V +      GL      T R  + R      V+L        +       
Sbjct: 722 TPQILDCALPVIA-----SGLPPQERETRRLGAMRPD-GCAVRLLTAETPFSE------- 768

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMI---------GTDTIFSNGKKRVIQAKDIL 377
                              A  IA  I+ M+                  +       DI 
Sbjct: 769 -------------------ALFIAKEINRMVGGIDMLDAHRQGGAPMREESAPRGFGDIA 809

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           VL R  +   L+            I      R       A++  +A  R + ++      
Sbjct: 810 VLYRTHRQASLLEE----CFQKEGIPYNVAGRESYLTDKAVRTALAFFRSLPAKRQRPPV 865

Query: 438 VC 439
             
Sbjct: 866 RA 867


>gi|56550562|ref|YP_161628.1| helicase [Cupriavidus metallidurans CH34]
 gi|56410268|emb|CAI30150.1| helicase [Cupriavidus metallidurans CH34]
          Length = 621

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/621 (12%), Positives = 162/621 (26%), Gaps = 151/621 (24%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---EFIKIRDRFNTYKMFKS 122
           F  L+   L +      +I+T  +      +  ++ + +    +           K    
Sbjct: 129 FHSLAYKQLGKNGGKLNDIVTDGVRAA---IVGQILQERGIDWKVEDALASIERSKHHLD 185

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHIL 181
                T+   +   Y+ A  +N  +DF+D++      +L        +         H+L
Sbjct: 186 DPKPGTVDAQIFEAYQAALSRNGKIDFQDMLRMAVAGMLTGGIRPYSVH--------HLL 237

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD   +Q                   +   +  VGD+ Q+I+ F  A      +  
Sbjct: 238 VDEYQDCDSLQSRWTSLHAA----------AGSVVCVVGDDDQTIFGFRDA---LGYQGM 284

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               K           I L  ++RS ++IL+  DK+                      + 
Sbjct: 285 EAFIKEF-----DARAIVLGKNYRSHSEILSAADKIIRNNAQRISKDL---------LAH 330

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            G  G+V+         +                          A  +  T++  I    
Sbjct: 331 RGSGGSVEFKRFDDEYKE--------------------------AVAVVETLAPAIRAGK 364

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                           VL R  +    I  + R     + +         + D      +
Sbjct: 365 TA-------------AVLARTNRILDPIEAVCRS----HGVKYYRAAGKSILDRPEAALM 407

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FA 474
             +   I   +       +  S        ++ ++  Q      +    +K        +
Sbjct: 408 GDMLELIQRAKLTGVDALLGYS---GIGTLELQQLHAQEAAEGELISAPRKKDLVESGIS 464

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFL 533
                K++  +K + E   +             L     R+  +     +     ++   
Sbjct: 465 EETAEKYRDFLKRLAEWRALYDREF------HALTLDGVREWMLKYVTEDAGKRAINTCY 518

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           +   +      + L+ L              +    + + + T+H +KG E   V +V  
Sbjct: 519 DVLSQLNGPFVARLEYLRRR----------NNEPAADALVLTTMHASKGREWDSVAIVRA 568

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +                                              + E  RL YV
Sbjct: 569 EETIVPDSESP---------------------------------------ESEERRLFYV 589

Query: 654 GMTRASDQLIICKHSNTSNEK 674
            +TRA D L I         +
Sbjct: 590 AVTRARDCLFISTAKKNPTSR 610


>gi|294790511|ref|ZP_06755669.1| UvrD/REP helicase subfamily [Scardovia inopinata F0304]
 gi|294458408|gb|EFG26761.1| UvrD/REP helicase subfamily [Scardovia inopinata F0304]
          Length = 1578

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 94/651 (14%), Positives = 194/651 (29%), Gaps = 125/651 (19%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
           S     +  ++ L    L        ++I+ +      +  +++ +    F+ + DR+  
Sbjct: 191 SSQADDQGSYAALVKDVLALSAELSNSMISPDC-PGIKEAVDQVSRWDQAFLDLVDRYAA 249

Query: 117 YKMFKSTL-------------ASLTLAKYLNAH---------YEEAKKKNCVLDFEDLII 154
               ++                 L + K              Y++AKK   + +F D  I
Sbjct: 250 QADSEADSGTGREEDKKPLDSRLLDMQKATRRRQMLLEMVLAYDQAKKDQSLAEFSDFTI 309

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               L  +     WIR +  ++ +H+ +DE QDTS  Q +++  L  D   G    S+P 
Sbjct: 310 AAFQLALRYP---WIRSEYREKFSHVFLDEYQDTSTTQAKLLTLLFHDPLPG--AESAPT 364

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            + AVGD  QSIY++ GA P       +    +     +      +  ++R+ A +L   
Sbjct: 365 YVTAVGDPYQSIYAWRGASPGAFSLFLKDYGMKEEEIER------MSYTWRNPALVLDAA 418

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN--PQQESWTSY 332
           +++         +  D    +R  S+   Q  +V     + S+ D+              
Sbjct: 419 NRL------TNPIRSDQADPLRQASAITRQEVSVDQLSYIDSKDDATVGLMGYPTVAQEA 472

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                    A   A +     +                     + +L+R +    +    
Sbjct: 473 DGIARFAHEAIKQAHQRVD--ARKAAHGFKNEEEYWAEYGKTHVALLLRAKTHRNIYCQA 530

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
              L     ++        L D    +DL+AL   +    D  S + +L +  F  S++D
Sbjct: 531 LSRL----GLTYEIAGDQSLWDRPDSQDLLALLSLVTDHTDSASALRLLATDRFGLSKND 586

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKF-----------QHVIKYIHELIHIAQFCSPH 501
           +  +       +  Y+           +            +   +   +L          
Sbjct: 587 LSVLSYMAQSLDNDYKRQALQQLTDQKRQEGNGTGQEVSDREFRQLRGQLPTGVYLTDLL 646

Query: 502 DF------------------------FTLILGAKKGRQQFISRFGNEVIDV--------- 528
           ++                           I  A    +   +     + DV         
Sbjct: 647 EWDDFPDSYRQWADSHRETQAISQVGLQQIAKASAMIRDLDAHLDQPIEDVVSYASKLLT 706

Query: 529 ------------------------LDEFLNFTLRNEQN----SYSSLQELISELEQYPPT 560
                                   L  F +      +       ++L   ++ L      
Sbjct: 707 LDIDASVSQAIAQGWAADTPSRSCLSAFQDLAQTYAREIADGQSATLTGFVAWLTANKEN 766

Query: 561 IKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                      +++ +V +MTVH AKGL+   V +   G+Q F      ++
Sbjct: 767 PTDEFVGGSVLSDNPDVVVMTVHQAKGLQWDAVAVGGMGAQTFPSNQGDRL 817



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 35/195 (17%)

Query: 770  LESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                 + +     G   H+  Q  I       +   ++    K  +   ++E    +  I
Sbjct: 1327 RPMPRASSLQAQHGTEFHEWAQEFILPSSLSSQGEHLSGQAWKEYRQKISREVAQEVSRI 1386

Query: 829  TRLLENP----------MMTT--------AMSCDSYS-EVSVSGKINCPKKDII-ISGRI 868
            T L+  P          ++              ++++ E S++  I      I  + G +
Sbjct: 1387 TNLMSAPAEGGQTDVPQLLRWKNNLLHSVWAGREAWAAEQSITDTIEGGDGSIYHLRGSL 1446

Query: 869  DQISI----------SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--P 916
            D +            ++    I ++KT H  P          +AQL IY  +L D     
Sbjct: 1447 DAVFYGRLNDDPNNPTENFYTIVDWKTGH-KPGRPAEKAEK-LAQLDIYRLMLSDLLGIG 1504

Query: 917  NKSLVCLLIYVSEPK 931
               +   L Y+ E +
Sbjct: 1505 IDQIEAQLYYLDEDR 1519


>gi|330814533|ref|YP_004362708.1| UvrD/REP helicase [Burkholderia gladioli BSR3]
 gi|327374525|gb|AEA65876.1| UvrD/REP helicase [Burkholderia gladioli BSR3]
          Length = 573

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/686 (11%), Positives = 182/686 (26%), Gaps = 152/686 (22%)

Query: 1   LKNR-FGLS---LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
           L+     ++     ++     K  W L           +  ++       ++  + +   
Sbjct: 15  LRRHCLAIACPGAGKTKMSAAKAAWRL------QDPTAMVGAVTFSKDAAVELRERILAL 68

Query: 57  SQTQCIEERFS-LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---EFIKIRD 112
           +         +    S    Q   P +       +     +  ++        +  +   
Sbjct: 69  APPDAKRRLIAGTFHSLSFKQLQQPGRGRADIASDGDRLGMLGRVLAELGYDWKVEEAVP 128

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                K         +    L A Y++A ++N  +DF+D++    + ++  ++  +    
Sbjct: 129 IIERIKTNFGQADEGSAEAALYAAYQDALERNGKIDFQDMLRLAVERMQSGEIKPY---- 184

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
               +  +L+DE QDT  +Q+  +               +   +  VGD+ QSIY F  A
Sbjct: 185 ---RLTDLLVDEFQDTDPLQFRWVELHAR----------AGTQVTVVGDDDQSIYGFRAA 231

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                 R      +           + L  ++R  A+IL   D+V     +       ++
Sbjct: 232 ---LGFRGMETFARTFEA-----QRVVLGSNYRCRAEILAAADRVIQNNVDRMPKLLHAS 283

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                     G  G V            + + +     +  ++L                
Sbjct: 284 R---------GTGGEV---------AARRFDDEYGDAVAAVEALE--------------- 310

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                           ++   +   +L R  +    +  + R     + +         +
Sbjct: 311 ---------------PKLAAGESCAILARTNRILDPLESVCRS----HGVPYYRASGGSV 351

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ- 471
                   +  L + +   + +     +L       S  D+  +  +        +  + 
Sbjct: 352 LSKPQAALMCNLLQVVEGHKQNG-IDAVLG--YMGMSSYDLGTLHKRMGTAFVQLQKQEL 408

Query: 472 ---KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
                     + ++  +K + E   +            +              G+     
Sbjct: 409 IGLGLHEETATAYRAFMKRLGEWQALCLRSFHSLALEGV-----YEWMMTYAKGDVATRA 463

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           +    +   R       S  E I  L +               + + T+H+AKGLE   V
Sbjct: 464 IQCIYDVVSRLSG----SFSERIEFLRRDNNK------PGEGVLVLTTMHSAKGLEYDHV 513

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           ++  +   V                                              + E  
Sbjct: 514 WISRSEEGVVPDSKSP---------------------------------------ESEER 534

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEK 674
           RL YV MTRA D L I      +  +
Sbjct: 535 RLFYVAMTRARDSLTISSTKKNAVSR 560


>gi|257075812|ref|ZP_05570173.1| ATP-dependent DNA helicase [Ferroplasma acidarmanus fer1]
          Length = 890

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 118/783 (15%), Positives = 228/783 (29%), Gaps = 159/783 (20%)

Query: 129 LAKYLNAH---YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           L  Y       YEE K+     DF DL+     L            +  +   ++ +DE+
Sbjct: 176 LFDYFYQAFNYYEENKENP---DFNDLLFQFQKL------------EDKKTYEYVFVDEL 220

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + I+  +               S+    F VGD KQSI+ F G              
Sbjct: 221 QDVNDIESRI-------------AMSTGNVKFLVGDRKQSIFGFQGGALSVFNSLI---- 263

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                        +L +++RST  IL                          +   +   
Sbjct: 264 -----GNSGIEKKDLKINYRSTETILA-----------------------YSKQYYLKFE 295

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
             V   E     + +    +     S  +S+ +          I  +I            
Sbjct: 296 NDVPELENFRGTNKNGNKVKIVEVDSPEESVME----------IINSI------------ 333

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                + + +I ++ R              L + Y I    +D  + T + A KD+ A  
Sbjct: 334 ----PVSSGNIGIIARTNSQI----DTISSLLDRYSIDY-SSDSNVHTINQAKKDITAFL 384

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           + IL    D   +  + +P    S  + FKI       E   +           + + + 
Sbjct: 385 KGILYDRPDD-IINAMVTPFSGISLKEAFKIAESLRSEENTIDLFDSSNPFFSLRNKELS 443

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
               E I            + I          +          + EF +      + +  
Sbjct: 444 ---RENIMDLFESRIFPIASSISREYFLTAATVKS-------SIGEFFDAERDYTRKN-- 491

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
                   L+        +  + ++ + + TVH AKG E   V            K  K 
Sbjct: 492 ----FFDFLDLSYSE--NSSKSGNSRIILTTVHKAKGREFDNVIY-------LPKKPRKS 538

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +  +       I                       + E  R+ +V  TRA ++L +C
Sbjct: 539 DTYIDIIVSSIIEEIKRINV--------------DDELKNESVRIDFVAFTRAKEELWVC 584

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
            +   +      + +       ++ N    +++ +    N+          +  + T   
Sbjct: 585 TNRREAPNYLIPEYSEM----VAYENIPEKQEVTVPGKYNEAYLQFVSGDYNGAKETLSS 640

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           +E  +K ++ E    K + S     I  P+ +         K N+  L         GL 
Sbjct: 641 KENWLKNIIYEFFQNKNVLSFSLISIENPFFM--------LKNNILKLNEKTDALYYGLN 692

Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
            H++ + +        KN I +    N         ++++  I        +   +S  +
Sbjct: 693 AHEMAESL-------YKNEIKNELLGNVDKQILSNIESVVNQIKSGFNMEQIEAEVSAIA 745

Query: 846 YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
                   + +    +I+  G+ID +    +   I +YKT   + +        H  QL 
Sbjct: 746 RINQMFE-EFSGQPDNIMFFGKIDAVFSDGKKYVILDYKTDKTIEK-----ASHHRVQLL 799

Query: 906 IYE 908
            Y+
Sbjct: 800 AYK 802


>gi|289705136|ref|ZP_06501540.1| ATP-dependent DNA helicase (UvrD/REP) family protein [Micrococcus
            luteus SK58]
 gi|289558164|gb|EFD51451.1| ATP-dependent DNA helicase (UvrD/REP) family protein [Micrococcus
            luteus SK58]
          Length = 1146

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 91/967 (9%), Positives = 242/967 (25%), Gaps = 99/967 (10%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             ++   ++     DL           +  V+  + TG       A+ L+  +        
Sbjct: 114  AVTPVRTWSSYAFDLLRRARVTGPLRHLEVAPRLLTGAEQDTVIAELLEGYAAGLAAAPD 173

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            +    +            +  +   ++  +L +++ +   E  ++++    +   +    
Sbjct: 174  WPADVAP----------AVEARGFRREVRELVDRMSELGLEPGRLQELGTAHGRPE---- 219

Query: 126  SLTLAKYLNAHYEEA--KKKNCVLDFEDLIINTNDLL--------KKRDVSAWIRYKIDQ 175
                A  L   Y +          D   L+     +L        ++   +     +   
Sbjct: 220  -WEAAAVLLQDYRDRIDLGMAEAFDAAGLLSAAVRVLTERHPEDPERDAAAQAFVAEERD 278

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             +  ++++++ + +    +++  L              R +        ++  F GA P 
Sbjct: 279  RLAVLVVEDLHEATPAVHDLLSVL-----------GRGRDVLLTASPDTTVEGFRGARPD 327

Query: 236  RVLREK-----RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
             + R             A  A     +  L    R  A++     +V          +  
Sbjct: 328  LLARYPGVLDPDPVPGAAPLASPDGRVRVLTRGHRMRAEVQDAYLRVARRVRQRT--AGV 385

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
              T      +         +      +                  L +    +    R+A
Sbjct: 386  ERTRTETVPADGDGAVRAHVVPTRAHEDQLVLERVLRVHHEDGVPLDRILVVARSGSRVA 445

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILV------LVRKRKDTPLITFLTRFLKNDYKISV 404
                ++             ++  ++  V      L                + +  ++  
Sbjct: 446  ALARHLEAEGVPVLRDAAGLVLKEEPAVAPLLTLLDAAGALAEDPEAGVEDVLDPDEVVG 505

Query: 405  VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
            +   R+ +   L ++ L                   L +           +    R    
Sbjct: 506  LLTGRYGMASALHVRRLRQDLLAAERGRGGRRTSDALLAAALLDPSLAGPEHERHRALRR 565

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
              +                            +                 R++  SR  + 
Sbjct: 566  VHWMLRDGLEAARAPSASPETVLWALWSASGRAERWRSLALRPAEHANDRRE--SRRADA 623

Query: 525  VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVHTAK 581
             +D +        R  +Q   +S +     +E            + + + V + T   A 
Sbjct: 624  DLDAVVALFKVAERFVDQFPGASPESFAVYMESQDLPVDTLARRAESGDAVHVRTPAAAA 683

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            G E   V +V     V+ +  ++   +  +   D             +       +   +
Sbjct: 684  GQEWDTVIVVGLQEGVWPNTRLRGQLLGATDLVDLVTLP-------ADAPWPTDHRTRLR 736

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              +++  R+L   ++RA  Q+++                            +     +LT
Sbjct: 737  EVRQDELRMLAAAVSRARRQVVVTAVRAPDEGPSDFLDLVDPPERLPAEARDAAGARRLT 796

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREET-----------------------IKQLMDEQK 738
               +     A             E +                                  
Sbjct: 797  AVPDPITAPALVGRLRRVLEAGDEADAADGVTPRAAAAAGLAVLAEDGVTVADPRRWWGL 856

Query: 739  IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL-------SDNQTFNRGLIIHKLLQ 791
            +P    + + +   E   L+PS ++T  +  L+ +L             + G ++H + +
Sbjct: 857  LPLSTEAALVDPEREVVALSPSRVETALRNPLDWVLYHVGANAGGTLAQSVGTLVHSVAE 916

Query: 792  VIFTLPEHKRKNFITSYCTKNA---KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS- 847
                      +  +     +           E+      +   +    +  A      + 
Sbjct: 917  HHPEGVPEDVRAELERRLPELGLPEGWITEIEHDRARGLVDAYIGYWSIARAAGRRPVAQ 976

Query: 848  EVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            EV +   +      + I+G +D++        FI + KT    P   E        QL+ 
Sbjct: 977  EVRLLADLTWGGTTVRITGVVDRLEADAQGRPFIADLKTGRSAPTGAEMAR---QPQLAA 1033

Query: 907  YEKILKD 913
            Y+  ++ 
Sbjct: 1034 YQVAVRA 1040


>gi|260904116|ref|ZP_05912438.1| superfamily I DNA/RNA helicase [Brevibacterium linens BL2]
          Length = 679

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 77/589 (13%), Positives = 157/589 (26%), Gaps = 170/589 (28%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAHYEEAKKKNCVLD 148
            + + D+  +L+ +    + + D               +     +   Y EAK +  ++D
Sbjct: 133 RELNRDVASELEFAAASLLGVDDYATQAAGRDLPGKLSVEDMVRIFEAYSEAKTRGRLMD 192

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           FED+++  N +L +      I   I ++  H ++DE QD S +Q++V+            
Sbjct: 193 FEDVLLVLNGVLAEYPA---IAADIREQYRHFVVDEFQDVSPLQYDVLSRWLG------- 242

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                  L  VGD  Q+IYSF GA+   +                  + I+L  ++RS+ 
Sbjct: 243 ---PRDNLCVVGDPAQTIYSFAGADSSLLGTLDSSLPTS--------TTIQLVRNYRSSK 291

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            I++  + +     +   L+  +      + +                            
Sbjct: 292 AIVSTANNLLRH-TSRTALTLRTDNPDGRQPAMTEYP----------------------- 327

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                       +    A  +   IS  I              + + I VL R    +P 
Sbjct: 328 ------------TDDAEAAGVVKAISAEINAGR----------RPRSIAVLFRTNGQSPA 365

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                        I  V            +K+ + + +   +         ++   L + 
Sbjct: 366 YEQALAT----AGIPYVLRGGERYFARKEVKEAILMLKAARATSSGRPLPEVVAEVLISL 421

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                                            +   + +  L+ +A+            
Sbjct: 422 GYST---------------------KPPAAGASRQKWESLKALVDLAETL---------- 450

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                                        +        L+  +++L           + +
Sbjct: 451 -----------------------------QAGSELPVPLETFLADLSDRAE---HQFAPD 478

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V + + H+AKGLE   V LV     +                               
Sbjct: 479 IEGVTLASFHSAKGLEWDSVHLVGLSEGLLP----------------------------- 509

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                 +          E  RL YV +TRA   L +    +  + K+  
Sbjct: 510 ------ISYAQTPRAIAEERRLFYVALTRAGTDLSMSWSLSRHDSKQRP 552


>gi|300783159|ref|YP_003763450.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
 gi|299792673|gb|ADJ43048.1| ATP-dependent DNA helicase [Amycolatopsis mediterranei U32]
          Length = 694

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/383 (14%), Positives = 123/383 (32%), Gaps = 71/383 (18%)

Query: 48  KKAQTLQQASQTQCIEERFSLLS-SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
              + L+        +  + LL        +   +  + T+   +   DL  +++ ++  
Sbjct: 97  AARRQLRYFWPRVVGDRPWDLLENKLRYVGQAANRAKLGTE--VEILRDLASEIEWAKAS 154

Query: 107 FIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
            I   D    T +  +   A       +   YEE K    VLDF+DL+++T  +L++   
Sbjct: 155 LISPDDYPAVTARAQRDIPAPAAQVAEVYRTYEELKNAAQVLDFDDLLLHTTAVLEEHGA 214

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              +  +  +     ++DE QD + +Q  ++ +                 L  VGD  Q+
Sbjct: 215 ---VAEEFRERYRCFVVDEYQDVTPLQQRLLDAWLG----------GRDDLTVVGDANQT 261

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IYSF GA P+ +L   R             +++ L   +RST +++ + ++V        
Sbjct: 262 IYSFGGASPRPLLEFTRRYP--------DATVVRLERDYRSTPEVVALANRVIGAARGRP 313

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                + + ++    R                                    +    ++ 
Sbjct: 314 -----AGSRLKLIGQRPPGPEP---------------------------RFAEFDDEAVE 341

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A  +A  +  ++             + A +I +L R    +               I  +
Sbjct: 342 AGAVARRVRELLDGG----------VSASEIAILYRVNAQSEAYESALAE----AGIPYL 387

Query: 406 GNDRFILTDHLAIKDLMALGRFI 428
                   +   ++  M+  R  
Sbjct: 388 VRGGERFFNRTEVRQAMSALRMA 410



 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 52/177 (29%), Gaps = 38/177 (21%)

Query: 524 EVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
           E  D L   +          + + L    +EL+Q               V + ++H AKG
Sbjct: 443 ERWDALLAIVELAEELASTVADADLPRFCAELDQRAAAQHPPTVEG---VTLASLHAAKG 499

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   VFLV          H                                      ++
Sbjct: 500 LEWDAVFLVGLAEGTMPILHAGD----------------------------------DEA 525

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             EE  RL YVG+TRA + L +      +   + N+R    +      +    +  +
Sbjct: 526 AIEEERRLFYVGVTRAREHLWLSWALARTPGARRNRRRSRFLYGLVPEDHPAARAAR 582


>gi|289425544|ref|ZP_06427321.1| HRDC domain protein [Propionibacterium acnes SK187]
 gi|289428126|ref|ZP_06429829.1| HRDC domain protein [Propionibacterium acnes J165]
 gi|289154522|gb|EFD03210.1| HRDC domain protein [Propionibacterium acnes SK187]
 gi|289158726|gb|EFD06927.1| HRDC domain protein [Propionibacterium acnes J165]
 gi|313764141|gb|EFS35505.1| HRDC domain protein [Propionibacterium acnes HL013PA1]
 gi|313801685|gb|EFS42925.1| HRDC domain protein [Propionibacterium acnes HL110PA2]
 gi|313807177|gb|EFS45670.1| HRDC domain protein [Propionibacterium acnes HL087PA2]
 gi|313816234|gb|EFS53948.1| HRDC domain protein [Propionibacterium acnes HL059PA1]
 gi|313819371|gb|EFS57085.1| HRDC domain protein [Propionibacterium acnes HL046PA2]
 gi|313820635|gb|EFS58349.1| HRDC domain protein [Propionibacterium acnes HL036PA1]
 gi|313822560|gb|EFS60274.1| HRDC domain protein [Propionibacterium acnes HL036PA2]
 gi|313825506|gb|EFS63220.1| HRDC domain protein [Propionibacterium acnes HL063PA1]
 gi|314918014|gb|EFS81845.1| HRDC domain protein [Propionibacterium acnes HL050PA1]
 gi|314920390|gb|EFS84221.1| HRDC domain protein [Propionibacterium acnes HL050PA3]
 gi|314923616|gb|EFS87447.1| HRDC domain protein [Propionibacterium acnes HL001PA1]
 gi|314929982|gb|EFS93813.1| HRDC domain protein [Propionibacterium acnes HL067PA1]
 gi|314956482|gb|EFT00770.1| HRDC domain protein [Propionibacterium acnes HL027PA1]
 gi|314957326|gb|EFT01429.1| HRDC domain protein [Propionibacterium acnes HL002PA1]
 gi|314960473|gb|EFT04575.1| HRDC domain protein [Propionibacterium acnes HL002PA2]
 gi|314962486|gb|EFT06586.1| HRDC domain protein [Propionibacterium acnes HL082PA1]
 gi|314966454|gb|EFT10553.1| HRDC domain protein [Propionibacterium acnes HL082PA2]
 gi|314967649|gb|EFT11748.1| HRDC domain protein [Propionibacterium acnes HL037PA1]
 gi|314978132|gb|EFT22226.1| HRDC domain protein [Propionibacterium acnes HL072PA2]
 gi|315077702|gb|EFT49753.1| HRDC domain protein [Propionibacterium acnes HL053PA2]
 gi|315084660|gb|EFT56636.1| HRDC domain protein [Propionibacterium acnes HL027PA2]
 gi|315085345|gb|EFT57321.1| HRDC domain protein [Propionibacterium acnes HL002PA3]
 gi|315088595|gb|EFT60571.1| HRDC domain protein [Propionibacterium acnes HL072PA1]
 gi|315092769|gb|EFT64745.1| HRDC domain protein [Propionibacterium acnes HL060PA1]
 gi|315098842|gb|EFT70818.1| HRDC domain protein [Propionibacterium acnes HL059PA2]
 gi|315101559|gb|EFT73535.1| HRDC domain protein [Propionibacterium acnes HL046PA1]
 gi|315103763|gb|EFT75739.1| HRDC domain protein [Propionibacterium acnes HL050PA2]
 gi|327327131|gb|EGE68910.1| ATP-dependent DNA helicase [Propionibacterium acnes HL096PA3]
 gi|327327276|gb|EGE69052.1| ATP-dependent DNA helicase [Propionibacterium acnes HL103PA1]
 gi|327443756|gb|EGE90410.1| HRDC domain protein [Propionibacterium acnes HL013PA2]
 gi|327452212|gb|EGE98866.1| HRDC domain protein [Propionibacterium acnes HL087PA3]
 gi|327452689|gb|EGE99343.1| HRDC domain protein [Propionibacterium acnes HL083PA2]
 gi|327453447|gb|EGF00102.1| HRDC domain protein [Propionibacterium acnes HL092PA1]
 gi|328752845|gb|EGF66461.1| HRDC domain protein [Propionibacterium acnes HL025PA2]
 gi|328753888|gb|EGF67504.1| HRDC domain protein [Propionibacterium acnes HL087PA1]
 gi|328754856|gb|EGF68472.1| HRDC domain protein [Propionibacterium acnes HL020PA1]
          Length = 706

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/557 (14%), Positives = 149/557 (26%), Gaps = 164/557 (29%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA        +        
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGA--------RADYLLDFV 286

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 287 ADHPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I VL R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAVLYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPDGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           EL +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 ELAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMV 685
           +  N  +     +   +
Sbjct: 565 SGGNRDRQGISRFLRGL 581


>gi|256545275|ref|ZP_05472640.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170]
 gi|256399102|gb|EEU12714.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170]
          Length = 604

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 90/546 (16%), Positives = 171/546 (31%), Gaps = 117/546 (21%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   YE+ KK+  +LDF+D+ +              +   I  +  +  +DE QDTS
Sbjct: 154 ADRIYLEYEKIKKQKHLLDFDDMQVYALK----LLEDKKLLKSIKNKYKYFQLDEGQDTS 209

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L+Q++++  +                L  V D+ QSIYSF  + P  +L   +I      
Sbjct: 210 LLQFKILEKIV----------MPENNLLVVADDDQSIYSFRASNPNYLLNFTKIY----- 254

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR-SSRIGQVGTV 308
              +   I+ L  ++RS  +I+ +        +N              +   +  +  + 
Sbjct: 255 ---KDAKIMTLDTNYRSGEEIIKLAKNFIGQNKNRYKKDFKVNRKNPSQIKIKSFKNFSK 311

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +    + +   ++             SL      + +   I   I +   +         
Sbjct: 312 EYAYILENIDKNENTGILFRNNISAISLISYLLENNIDFSINSKIMDFFESKIFLDM--- 368

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                  I ++                      + +     + ++ +L+  D+    + I
Sbjct: 369 -------INIINFSND--------------FNNVEIFSEIYYKISSYLSKDDIE---KLI 404

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
               ++  F     S + NF +D +F I                             K +
Sbjct: 405 YKPINENIFDFFENSDIENFKKDALFNIE----------------------------KKL 436

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +        F    L  K       SR   E     D ++            S +
Sbjct: 437 KHLRKLDIDKKIS-FIHQSLSYKNYIDML-SRKYKEETVNKDIYIESLKYF----TKSCE 490

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            L    E+     K++ S + N +++ T+H++KGLE   VF++D     F          
Sbjct: 491 NLDQVYEKIKIIEKKSKSLSENNLKLSTIHSSKGLEYDTVFVIDLIKNEFP--------- 541

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                     L K       EE  R+ YV +TRA + L +    
Sbjct: 542 ------------------------IILDKENYFERLEEERRIFYVAITRAKNNLHLLSLK 577

Query: 669 NTSNEK 674
           N +N+K
Sbjct: 578 NRNNKK 583


>gi|227524220|ref|ZP_03954269.1| ATP-dependent DNA helicase [Lactobacillus hilgardii ATCC 8290]
 gi|227088451|gb|EEI23763.1| ATP-dependent DNA helicase [Lactobacillus hilgardii ATCC 8290]
          Length = 786

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 85/613 (13%), Positives = 177/613 (28%), Gaps = 106/613 (17%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            +++ +       +  L   T    +   Y   K++N  +DF D+ I    LL + D   
Sbjct: 190 KQLKAQLGEVGEDEYDLDFYTDYLAVMTQYMILKRQNSFVDFNDMKILLRQLLDQPDHVR 249

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVI-RSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
               +I      +++DE QD   +QW+++ R L+++             L  +GD+ QSI
Sbjct: 250 SFH-QIMSRFKLVVMDEFQDIDNLQWDIMTRLLSQEALS---------RLIVIGDDDQSI 299

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YSF G+ PK           +            L  ++R+   IL+    +         
Sbjct: 300 YSFRGSNPK--------FILKFHGILPGAKTYRLSTNYRTGGQILSEAKPLIKHNYVRLA 351

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               +            + G V ++    +  D   +   +  +   D        ++L 
Sbjct: 352 KELKAFN---------EKKGQVHVYPLKTAGFDPNSDMFTKLVSQIRDPEIDNHQIAVLV 402

Query: 347 RRIAYT--ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
           R  +    +++ +    I+ N   R    +  L+         ++  L +    +     
Sbjct: 403 RYNSDRTLVADWLANQQIYVNINNRGAIFQHTLI-------YRILVNLMQAFWQNRFQPF 455

Query: 405 V-GNDRFILTD-HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                R   T     + ++      I S  D                    + +  QR E
Sbjct: 456 HEQATRIGFTTYRRHVTEIDKAAGGIDSLSD-------------YLEIATKYNLRHQRTE 502

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH-DFFTLILGAKKGRQQFISRF 521
            +  +  I           +   + + +        +     +  +L        ++++ 
Sbjct: 503 NQKRFAKIDTRVRMAFKIIKEQRQDVEKANSETSIGNVFMQIWNTVLELTATYFDYMTKN 562

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN------HNEVRIM 575
                D                   + +     +Q     +   + +       N+V+ +
Sbjct: 563 DFVSKDT----FKDMTTYLHTEIKQITDPDVWFDQEYQKRQLLEANSQKGVSLENDVQFL 618

Query: 576 TVHTAKGLESPVVFLVDTGSQVFS------HKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++H AKGLE   V+L     +         +             D     +   + K   
Sbjct: 619 SLHQAKGLEFKYVYLYGLSDKQLPVGTTIINDWFHPDISFEDFIDRWNDLVTRQRVKELT 678

Query: 630 NIVSDLIKHLKKST-------------------------------------QEEYNRLLY 652
            I+      + +                                        EE  RL+Y
Sbjct: 679 GILEAAFIDITEEVRKNKHIDLNHIEIEKFHDLDLDLLHNWYTAIRHYSQFIEEERRLIY 738

Query: 653 VGMTRASDQLIIC 665
           VGMTRA   L + 
Sbjct: 739 VGMTRAKTVLNVS 751


>gi|86609547|ref|YP_478309.1| UvrD/Rep family helicase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558089|gb|ABD03046.1| helicase, UvrD/REP family [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 719

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 91/621 (14%), Positives = 189/621 (30%), Gaps = 67/621 (10%)

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
            Q+I +     +   ++     I              +   L  A  + A Y+   ++  
Sbjct: 152 PQKIAQNRAQFRRSFQQMVQVVISRAKNLRLGPEVIPSEGYLGWAAPIYAGYQAELRRLG 211

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            LD++DL     DL++       +R ++    +++  DE QD+S +Q E++R L++    
Sbjct: 212 KLDYDDLGWQAVDLIEGSPE---LREQVQNWYDYLFEDEAQDSSPLQEELLRLLSQ---- 264

Query: 206 GKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                     L  VGD  QSI   F  AEP+      +              ++ L  S 
Sbjct: 265 ------RTGNLVRVGDPNQSIMGTFTSAEPRLFRAFCQ----------ASPQVVLLDESS 308

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS   I+ + +++         +    T                      ++    Q  P
Sbjct: 309 RSAPQIIALANRLVEWVNQQHPIPALRTALAPQ--------------PIQLATSGGQNPP 354

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
             E    +   +                    +      +    +    + + +LV   +
Sbjct: 355 ASEGGVDFLRVVGSPEEE--------------LQQVARQAIAAAQAFPGQTVAILVTTNE 400

Query: 385 DTPLITFLTRFLKNDYKISVVGND---RFILTDHLAIKDLMALGRF---ILSQEDDLSFV 438
                    + +  +  I ++      R +L     I D  A       + +  D L+  
Sbjct: 401 LGGKALSYLQEMGAERVIDLLRGSPSQRRVLLQLKGIIDWFAQPTAPTRLAAAVDCLADW 460

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
             +           I     +R       E               +++ +   +   +  
Sbjct: 461 AGIPRAELGPMLTWIRASLPERLLFPNFGEAPALPDGPPWQNLGRLLRTLAGWLRAGRSP 520

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
            P      ++     R+      G  VID L++ L      +    +   ++I +     
Sbjct: 521 WPEVL--NVIVQSLYRKPEELFVGRYVIDQLEQVLGSLPETDWQEIAQEFQVILDHRLNN 578

Query: 559 P-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP- 616
             +   A       + + T+H AKGLE   VF+    +  F  ++ ++   +  L++   
Sbjct: 579 LPSEIFAFDPEPGSITVTTLHRAKGLEWDQVFIPQVSAYEFPTQYGERTLGLKFLDEVDM 638

Query: 617 -----GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                     +              K        E  RLLYVG+TR+  +L +   S + 
Sbjct: 639 QAEALAQLRQLSPKGGWELQADSATKQAFLDLAAERLRLLYVGITRSKRRLTLSVSSQSR 698

Query: 672 NEKKSNQRTWYDMVYDSFHND 692
              + +    + ++  SF   
Sbjct: 699 FGTEQSSSLVFRVLSRSFRAG 719


>gi|239917998|ref|YP_002957556.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|281415826|ref|ZP_06247568.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
 gi|239839205|gb|ACS31002.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665]
          Length = 1145

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 96/968 (9%), Positives = 250/968 (25%), Gaps = 102/968 (10%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
             ++   ++     DL           +  V+  + TG       A+ L+  +        
Sbjct: 114  AVTPVRTWSSYAFDLLRRARVTGPLRHLEVAPRLLTGAEQDTVIAELLEGYAAGLAAAPD 173

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            +    +            +  +   ++  +L +++ +   E  ++++    +   +    
Sbjct: 174  WPDDVAP----------AVEARGFRREVRELVDRMSELGLEPGRLQELGTAHGRPE---- 219

Query: 126  SLTLAKYLNAHYEEA--KKKNCVLDFEDLIINTNDLL--------KKRDVSAWIRYKIDQ 175
                A  L   Y +          D   L+     +L        ++   +     +   
Sbjct: 220  -WEAAAVLLQDYRDRIDLGMAEAFDAAGLLSAAVRVLTERHPEDPERDAAAQAFVAEERD 278

Query: 176  EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             +  ++++++ + +    +++  L              R +        ++  F GA P 
Sbjct: 279  RLAVLVVEDLHEATPAVHDLLSVL-----------GRGRDVLLTASPDTTVEGFRGARPD 327

Query: 236  RVLREK-----RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
             + R             A  A     +  L    R  A++     +V             
Sbjct: 328  LLARYPGVLDPDPVPGAAPPASPDGRVRVLTRGHRMRAEVQDAYLRVARRVRQRTA---- 383

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES--SASILARR 348
                 R  +      G V+        H+ Q   ++     + D +P +     +    R
Sbjct: 384  GVERTRTETVPADGDGAVRAHVVPTRAHEDQLVLERVLRVHHEDGVPLDRILVVARSGSR 443

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILV------LVRKRKDTPLITFLTRFLKNDYKI 402
            +A    ++             ++  ++  V      L                + +  ++
Sbjct: 444  VAALARHLEAEGVPVLRDAAGLVLKEEPAVAPLLTLLDAAGALAEDPEARVENVFDPDEV 503

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
              +   R+ +   L ++ L                   L +           +    R  
Sbjct: 504  VGLLTGRYGMASALHVRRLRQDLLAAERGRGGRRTSDALLAAALLDPSLAGPEHERHRAL 563

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                +                            +                 R++  SR  
Sbjct: 564  RRVHWMLRDGLEAARAPSASPETVLWALWSASGRAERWRSLALRPAEHANDRRE--SRRA 621

Query: 523  NEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVHT 579
            +  +D +        R  +Q   +S +     +E            + + + V + T   
Sbjct: 622  DADLDAVVALFKVAERFVDQFPGASPESFAVYMESQDLPVDTLARRAESGDAVHVRTPAA 681

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
            A G E   V +V     V+ +  ++   +  +   D             +       +  
Sbjct: 682  AAGQEWDTVIVVGLQEGVWPNTRLRGQLLGATDLVDLVTLP-------ADAPWPTDHRTR 734

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +  +++  R+L   ++RA  Q++     +                       +     +
Sbjct: 735  LREVRQDELRMLAAAVSRARRQVVATAVRSPDEGPSDFLDLVDPPERLPAEARDAAGVRR 794

Query: 700  LTNSINKDEWIAYEWSTHHPENTPLEREET----------------------IKQLMDEQ 737
            LT   +     A             E +                                
Sbjct: 795  LTVVPDPITAPALVGRLRRVLEAGDETDAADGATPRAAAAGLAVLAADGVGVADPRRWWG 854

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL-------SDNQTFNRGLIIHKLL 790
             +P    + + +   E   L+PS ++T  +  L+ +L             + G ++H + 
Sbjct: 855  LLPLSTEAALVDPEREVVALSPSRVETALRNPLDWVLYHVGANAGGTLAQSVGTLVHSVA 914

Query: 791  QVIFTLPEHKRKNFITSYCTKNA---KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
            +          +  +     +           E+      +   +    +  A      +
Sbjct: 915  EHHPEGVPEDVRAELERRLPELGLPEGWITEIEHDRARGLVDAYIGYWSIARAAGRRPVA 974

Query: 848  -EVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
             EV +   +      + I+G +D++        FI + KT    P   E        QL+
Sbjct: 975  QEVRLLADLTWGGTTVRITGVVDRLEADAQGRPFIADLKTGRSAPTGAEMAR---QPQLA 1031

Query: 906  IYEKILKD 913
             Y+  ++ 
Sbjct: 1032 AYQVAVRA 1039


>gi|207092800|ref|ZP_03240587.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter
           pylori HPKX_438_AG0C1]
          Length = 574

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/447 (12%), Positives = 131/447 (29%), Gaps = 96/447 (21%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQK- 82
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKL 111

Query: 83  -----NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF----KSTLASLTLAKYL 133
                +      + K P   + L      +     + +                 L + +
Sbjct: 112 LESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAALYENI 171

Query: 134 NAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              +E  KKK+  +D+ DL++     +L++                 +L DE QDT+ +Q
Sbjct: 172 LEEFENTKKKHNYIDYNDLLLLFKKAMLERP-----------SPYKEVLCDEFQDTNPLQ 220

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +       
Sbjct: 221 ESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN------ 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +  L  ++RS+ +IL + ++V    E     + +   + +                
Sbjct: 263 --AQVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKSGKFN-------------- 306

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                      P   ++                 + IA  I                   
Sbjct: 307 ----------KPTLLNYNDNI----------AQCQDIAKRIVMRKD-------------- 332

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            K++ V+ R       +    R     + +           +   +   + +   I + +
Sbjct: 333 FKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSASFFESKEVALALDICALIFNPK 388

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQ 459
           D ++ + +L S + +   +    I   
Sbjct: 389 DIMAAIHIL-SCISDIGSNTAKDIHEA 414


>gi|111225322|ref|YP_716116.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111152854|emb|CAJ64601.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 1291

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 58/417 (13%), Positives = 114/417 (27%), Gaps = 78/417 (18%)

Query: 6   GLSLNESYEL------IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--------KKAQ 51
           GL  ++          +     P      + ++       E   P           + A 
Sbjct: 632 GLDPDQRRAAAHPAGPLLVLAGPGTGKTRTLVHAIAHRVAERDVPAEQCLAVTFTRRAAG 691

Query: 52  TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKL----------- 100
            L +            +L++ F     T  +    +        + +             
Sbjct: 692 ELAERLDAMLGARARRVLATTFHGLGLTIVREQHERLARGAQVQVADDAVRVELLDAALH 751

Query: 101 ----KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                +++             +          L   + A Y+   ++  ++D +DLI   
Sbjct: 752 GEGDSRARRRVSAGIAELKRLRALGQVQRDHDLVG-VLARYDAELRERDMVDLDDLIALP 810

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             LL+    +  +         H+ +DE QDT  +Q+ ++  L                L
Sbjct: 811 LTLLRS---APELVEHYRARWRHVWVDEYQDTDELQYRLLGLLC----------PPAANL 857

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             +GD  Q+IYSF GA+    LR ++               + L   +RST  I+     
Sbjct: 858 CVIGDPDQAIYSFRGADVGFFLRFEQDYP--------GAGTVALTRGYRSTRTIVRAALD 909

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V +      G +  +              G V L        ++       +     D+ 
Sbjct: 910 VIAPASLVPGRTLTAVRG-------AEGDGPVLLRRYRSEAEEA------IAVVDTIDAA 956

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
              +S   L   +  ++                 +   DI VL R  +    I    
Sbjct: 957 LGGTSFHALDSGVDGSVEA--------------GLSFADIAVLYRTARQAEPIMEAL 999


>gi|289751887|ref|ZP_06511265.1| superfamily protein I DNA and RNA helicase [Mycobacterium
           tuberculosis T92]
 gi|289692474|gb|EFD59903.1| superfamily protein I DNA and RNA helicase [Mycobacterium
           tuberculosis T92]
          Length = 488

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/479 (13%), Positives = 137/479 (28%), Gaps = 73/479 (15%)

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKR----AHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             + ++S +S+  L++ L+              +   + V+++TVH AKGLE  VV +  
Sbjct: 8   RASARSSEASVAGLLAYLDVAEVVENGLPPAELTVACDRVQVLTVHAAKGLEWQVVAVAH 67

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN---- 648
               VF     +   +       P +      + +    V D      +    +      
Sbjct: 68  LSRGVFPSTVSRSSWLTDPAELPPLLRGDRASAGAHGIPVLDTSAVADRKQLSDKISEHR 127

Query: 649 ------------RLLYVGMTRASDQLIICKHSNTSNEKKSNQRT---------------- 680
                       RLLYV +TRA D L++  H       K    +                
Sbjct: 128 RLLDRRRVDEERRLLYVAVTRAEDTLLVSGHHWGPTGTKPRGPSEFLCELKDIIDRSAAA 187

Query: 681 --WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                +V          ++  L ++  +  W A   +    +              D   
Sbjct: 188 GDPCGVVEQWASAPAGDERNPLCDNAIEAVWPADPLAARRGDVERGAALVAAAMSADLPG 247

Query: 739 IPKKLFSPIKN-------DINEPYILNPSTIDTKGKTNLE---------SLLSDNQTFNR 782
               +  P +        D++                 L           L+ D     +
Sbjct: 248 STTDIDHPPRPGDAPWSTDVDALLAERAHAARGAPARGLPNHLSVSSLVELVGDPVGARQ 307

Query: 783 GLIIHKLLQVIFTLPEHK--RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---- 836
                +L+  +   P+      +   ++  +        +  +L  +  R + +P     
Sbjct: 308 -----RLMCRLPKRPDPHAWLGDAFHAWVQQFYGAELLFDLGDLPGAADREVGDPEELAA 362

Query: 837 MTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQE 892
           +  A +  S++     +V      P  D ++ GRID + +       + ++KT       
Sbjct: 363 LQRAFTASSWAARTPAAVEVPFEMPIGDTVVRGRIDAVFVDPDGGATVVDWKTGKPPHGP 422

Query: 893 IEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
                     QL++Y          P  S+     YV      +  +       A + T
Sbjct: 423 AAMRQAA--VQLAVYRLAWAALRGCPTSSVRTAFYYVRSGITVVPDELPAPGELAMLLT 479


>gi|294502081|ref|YP_003566146.1| ATP-dependent DNA helicase pcrA [Salinibacter ruber M8]
 gi|294342065|emb|CBH22730.1| ATP-dependent DNA helicase pcrA [Salinibacter ruber M8]
          Length = 772

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 95/697 (13%), Positives = 205/697 (29%), Gaps = 76/697 (10%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT--P 80
           L +  V        LS +       + +  L+     +   +      + +LT   +   
Sbjct: 92  LAHEIVRARPDLAGLSEDFHVVDDRQSSDILRDV--AESWYQSNQSKITGYLTGDISDYK 149

Query: 81  QKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           +K ++++++ ++   + +  +K ++   +         +   + +    +A+ +   Y++
Sbjct: 150 RKEVLSEKLPRQVRRVAQNAIKHAKSSGLSPEALRGYLQDRGAEMPLAEMAQSIYQGYQQ 209

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           A      +D++DLI +   +L+  +    +  ++  +  ++L DE QD+S IQ ++++ L
Sbjct: 210 ALNVQSAVDYDDLIRHALRVLQTDEE---LLSRLQHQWPYVLEDEAQDSSRIQQQILQRL 266

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIY-SFHGAEPKRVLREKRINQKRATNAGQKFSII 258
                       S      VGD  Q+IY SF  A+P  +              G+     
Sbjct: 267 AG----------SQANWVRVGDPNQAIYESFTTADPNLLREF----------VGKAGQSP 306

Query: 259 ELPLSFRSTADILTVVDKVF-------SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
           EL  S RS   I+ + ++            E    L+     T      +          
Sbjct: 307 ELAQSGRSQPSIIKLANRTIWWSQEKHPNEEVRGALTGPLIRTTSEGDPQPNPPDRPGRI 366

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             V  +   +   +     +      + +     A  +              S  +++ I
Sbjct: 367 AFVSGEFTEE--EETRKVAAALGPWLEANPEKTCAMLVPVR----GMGVDAASRLEEQGI 420

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D   L++    T         +                        + A G    S 
Sbjct: 421 PYTD--SLLKTTSQTREAAQRIERVVEYLAKPTSPARLARCYVQWRSSQVEANGVRDESF 478

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            +          P      +   K+   + E       + +        +     ++ E+
Sbjct: 479 SEGGGKPEGESKPEGKGESEGKSKMEAAKAEIRETSRLVSQIGRPEDYIWPQGRSWLSEV 538

Query: 492 IHIAQFCSPHDF------FTLILGAKKG-RQQFISRFG------NEVIDVLDEFLNFTLR 538
                                 L        Q I   G       + + ++ +F     R
Sbjct: 539 EEDLTNEQLSRLEAFREKVRYWLELSGLPIGQLIMALGRDFFSDPDRLALVQKFSGLLRR 598

Query: 539 NEQNSYS-SLQELISELEQYPP-----------TIKRAHSANHNEVRIMTVHTAKGLESP 586
               +    L  L  ELE                       +  EV I T+H AKGLE  
Sbjct: 599 ASNYNPEWGLPRLSDELEVIAENERRFEGVGSGEADFDPEDHKGEVTISTMHGAKGLEWD 658

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV-------SDLIKHL 639
            V ++      F         +        G+ +        + +         +     
Sbjct: 659 RVHMMGVNDYHFPAAVAGDKFLPEKWFYRDGLNLQAETLAQIDALTGGEPYQEGEATTEA 718

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
           ++    E  RL YV +TRA ++L+I  +     + + 
Sbjct: 719 RQEYARERIRLFYVCVTRAREELMITTNIGRFEDNRP 755


>gi|228947485|ref|ZP_04109775.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228812005|gb|EEM58336.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 671

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 87/539 (16%), Positives = 171/539 (31%), Gaps = 96/539 (17%)

Query: 129 LAKYLNA---HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           L++        + E +K+N ++ F+D +IN   +L+    +   R  I Q  N+I IDE 
Sbjct: 209 LSQKFYQMMLEFNETRKRNNIVIFDDYMINLLHVLENDKEA---REYIQQRFNYIFIDEF 265

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+ +Q ++I+ +  +             L  VGD+ QSIY F GA+PK +    +I +
Sbjct: 266 QDTNPLQMKIIQLICPNDI------EDVAKLIIVGDDDQSIYYFRGAQPKYIKEFDQIYE 319

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       + L  ++RSTA I+   ++V +                +         
Sbjct: 320 T---------HTLTLMTNYRSTAKIVQAGNRVIAYN--------AEDRIQKSMEPFHKSE 362

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
           G   +      + +                          A  I    +  IG +     
Sbjct: 363 GDCFIQPLSNPEKE--------------------------AEWIINR-AQRIGVNHNDVE 395

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN---DRFILTDHLAIKDLM 422
            +      K + VL R         +          I  V     D   +      K   
Sbjct: 396 KEWSPDYTKSV-VLYRSATQIKTFLYELEA----QNIPFVIEANDDLMGIFSLDVFKRAY 450

Query: 423 ALG-RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
               RF   + +  +    + +           ++     +     +  +       +K 
Sbjct: 451 RYWSRFYNEEVNKRAQWNNIIAETSYAFYKKKQEVANFIGDGYLYLDPKKVADFICENKN 510

Query: 482 QH----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                 VI+Y+ +L+ +    S     + I+          ++   + I  +++  +   
Sbjct: 511 IDKKSLVIEYLEDLVKLKNKKSVS--ISGIINKLLKFPVSENQLTADEIKWIEKETSQFS 568

Query: 538 RNEQ--NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             E     ++ L +   E+              +N + ++T+H +KGL  P VFL+    
Sbjct: 569 SWEDVVKRFNELDKKKKEMTSKLEKYH---DGTYNALYLLTIHKSKGLSFPNVFLIGVYD 625

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
           +    K                         +   +   + K    +T EE  RL+Y  
Sbjct: 626 EGLPSKRAT--------------------KVTSTVLKESIEKAEPPTTLEEERRLMYGA 664


>gi|314924879|gb|EFS88710.1| HRDC domain protein [Propionibacterium acnes HL036PA3]
          Length = 706

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 82/557 (14%), Positives = 149/557 (26%), Gaps = 164/557 (29%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ C++D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCIIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA        +        
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGA--------RADYLLDFV 286

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 287 ADHPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I VL R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAVLYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPDGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           EL +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 ELAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMV 685
           +  N  +     +   +
Sbjct: 565 SGGNRDRQGISRFLRGL 581


>gi|315109410|gb|EFT81386.1| HRDC domain protein [Propionibacterium acnes HL030PA2]
          Length = 706

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 83/557 (14%), Positives = 149/557 (26%), Gaps = 164/557 (29%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRVRYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA        +        
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGA--------RADYLLDFV 286

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 287 ADHPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I VL R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAVLYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPDGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           EL +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 ELAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMV 685
           +  N  +     +   +
Sbjct: 565 SGGNRDRQGISRFLRGL 581


>gi|158337497|ref|YP_001518672.1| UvrD/REP helicase, putative [Acaryochloris marina MBIC11017]
 gi|158307738|gb|ABW29355.1| UvrD/REP helicase, putative [Acaryochloris marina MBIC11017]
          Length = 765

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/624 (12%), Positives = 192/624 (30%), Gaps = 67/624 (10%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE-KLKKSQDEFIKIRDRFNTYKMF 120
            +    LL       + T +    +   +   P+L    +++++   +  +  +   +  
Sbjct: 146 PQMYQELLVRGAFDGEETERLRRQSVLRSDCLPELAAIAIREAKSSGLSPQQLYALAEQV 205

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +  ++ L +A  L   Y++  +   ++D++D+I+    +L  +           +++  +
Sbjct: 206 QDEVSVLAIAAGLYERYQQLLQAQQLIDYDDMILAALQVLDNQSARQV----WQKQVFAV 261

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEPKRVLR 239
             DE QD++ +Q+ ++  L            +   L  VGD  Q+I S F  A+P     
Sbjct: 262 FEDEAQDSTPLQFRLLNRLASHEVS-----KAKPNLVRVGDPNQAINSTFTPADPIFFRE 316

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +        +  +  +  +  + RS+  I+   + +             S    + + 
Sbjct: 317 FCQQ-------SQAQQRLATMNQAGRSSTIIIQAANFMLDWI-------NQSQLAGQEQP 362

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            +   + TV   +   + + +      E +T               A  I   +  ++  
Sbjct: 363 FQPQTIQTVAKHDPQANANPAHEGRGLEIYTP--------EDVYQTADLIGQRVCQLLTD 414

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF-----LKNDYKISVVGNDRFILTD 414
               +             +LVR+ K    +               + I ++         
Sbjct: 415 HPDANA-----------AILVRENKQGSFLAERLNHPDQTVTLAAHGIDILDVGGGS-RQ 462

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                +++ + +F+       +    L+  +                    +Y       
Sbjct: 463 TQVPFEMLTILQFLARPHSPKTLKAALQILVDRQLIPAQEVHPLASQPEIFLY--PGPLE 520

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                + Q    +  +L+        +   + +  + K     ++       D L   L+
Sbjct: 521 PPQSEQVQEARSFCCKLLRSRWELPHYRLISFLALSLKYNAAELAT-----ADKLAARLS 575

Query: 535 FTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
             ++   +  ++L  L   +              +      ++ I+T+H AKGL+   VF
Sbjct: 576 QQVQGAPSMTTTLPILQELISAERFDPVDVEDVESQYLRPRQLTIITMHKAKGLDWDFVF 635

Query: 590 LVDTGSQVFSHKHIKK-----MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
           L    +++   +         +                  ++     V +  +       
Sbjct: 636 LPFLHARIIPGELRIPAASQFLGPFSLAEVARAQIRANVHNQVPLPNVEEAWQRASDLKS 695

Query: 645 EEYNRLLYVGMTRASDQLIICKHS 668
            E  RLLYV MTRA   L +    
Sbjct: 696 AEEFRLLYVAMTRAKRLLWMSAAK 719


>gi|78358538|ref|YP_389987.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
 gi|78220943|gb|ABB40292.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio
            desulfuricans subsp. desulfuricans str. G20]
          Length = 1089

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 94/648 (14%), Positives = 178/648 (27%), Gaps = 155/648 (23%)

Query: 18   KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
            + +  + + + +       L  E G    L +  TL   +     +          L++ 
Sbjct: 550  RQILAVTFTRRAATEMDGRLLAELGGNAALPRTDTLHALAFEYWHKAYDDA--PVLLSED 607

Query: 78   FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               +           S +  ++++++ +     R+R +                     Y
Sbjct: 608  GARRVF-----AEANSGETAQRIREAWERIAVCRERMSVCHTDD---------APFLHRY 653

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             + K+   + D+ DL+    + +                  H+L+DE+QD S +Q  ++R
Sbjct: 654  VKLKESWNLADYTDLLEFWLEQVNNGI--------YACPYVHVLVDEIQDLSPLQLTLVR 705

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            SL  +   G          F +GD  QSIY F GA                        +
Sbjct: 706  SLLPENGAG---------FFGIGDPDQSIYGFRGAHGDVRAFFGAAWP--------DMQV 748

Query: 258  IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            I+L  ++RS+  IL     +         +                  G ++L+      
Sbjct: 749  IKLTRNYRSSQAILDFSAALLPQDPPLVAMR--------------ALPGEIRLF------ 788

Query: 318  HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
             ++     + SW +        +++  LA   A  + +  G      +G    +   DI 
Sbjct: 789  -EAPTAEGEASWIAGQIRSLIGATSHSLADSGATRLKS--GGHDDDVSGMAGALAPGDIA 845

Query: 378  VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            VLVR       +  + +       I     +         I+ ++A            + 
Sbjct: 846  VLVR----FKAVIPVIQRTLVRLGIPCSVPEAEAFWVEPRIQMILA------------AA 889

Query: 438  VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
              +L                      E       K    G       ++ +    ++   
Sbjct: 890  GRVL---------------GIAYRSEEETISCPDKVLAKGPLGVSAYLQDMPPFDNLFWQ 934

Query: 498  CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                           G    ++         L   L                        
Sbjct: 935  SPEFRRLVKAYDEYGGWAGLLN------WVHLQTELELVR-------------------- 968

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                     +   +V+IM++H AKGLE   VFL      +        +           
Sbjct: 969  ---------SRSEKVQIMSLHAAKGLEFKAVFLPALEDGILPFASAGVLTGSVD------ 1013

Query: 618  IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                               K   ++  EE  RLLYVGMTRA   L + 
Sbjct: 1014 -------------------KARMRTDTEEERRLLYVGMTRAEQALFLS 1042


>gi|313827473|gb|EFS65187.1| HRDC domain protein [Propionibacterium acnes HL063PA2]
          Length = 706

 Score =  145 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 83/557 (14%), Positives = 149/557 (26%), Gaps = 164/557 (29%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRVRYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA        +        
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGA--------RADYLLDFV 286

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 287 ADHPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I VL R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAVLYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPDGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           EL +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 ELAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMV 685
           +  N  +     +   +
Sbjct: 565 SGGNRDRQGISRFLRGL 581


>gi|13541570|ref|NP_111258.1| DNA helicase II [Thermoplasma volcanium GSS1]
 gi|14324966|dbj|BAB59892.1| rep helicase single-stranded DNA-dependent ATPase [Thermoplasma
           volcanium GSS1]
          Length = 885

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 123/832 (14%), Positives = 246/832 (29%), Gaps = 195/832 (23%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE+ K+   V+D+ D++I   +L +K                ++LIDE+QD S ++
Sbjct: 180 IINLYEQEKENRKVIDYNDMLIKFINLSEKPH------------YKYVLIDELQDVSDLE 227

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            ++               S    ++AVGD+KQSI+ F G                     
Sbjct: 228 AKI-------------AGSVAENIYAVGDKKQSIFGFQGGGFSN---FISNFPNH----- 266

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +  L    R+   IL    + F      +         +   +S     G V++  
Sbjct: 267 ---QLKYLTEDHRNGKAILKYAKEFFK-----KSTKGGLDEDLEKLTSVRDHDGYVEV-- 316

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                                                       I               
Sbjct: 317 --------------------------------------------IEGSYSDILSVLDRFP 332

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
              + ++ R       I+ +     + + I    +     ++     D++   R IL  +
Sbjct: 333 RGSVGIIARTNAQVINISKVL----DSHGIKYSSSATSSNSEMAK-NDVLDFLRMIL-FD 386

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           DD   +  L +P    S  + + I        +    +  F      K +  +  I EL+
Sbjct: 387 DDDFLIKGLFTPFSGLSIAEAYNIKESVESGNS---SLLNFTTLNSIKKKFSVSGIKELL 443

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            I +        +L        ++            L E+L           +  Q+L++
Sbjct: 444 QIFENVVLPVAVSLGSDYYGTAKRIYM--------NLQEYLYM------YGINDRQDLLN 489

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF-LVDTGSQVFSHKHIKKMHIMPS 611
            LE     +    S+N   + ++TVH AKGLE   V  L  T    FS            
Sbjct: 490 YLEVCDQELT--ESSNTERISVLTVHKAKGLEFDHVIYLPKTTRDNFS------------ 535

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                     +    +   I     + +    ++E  R+ +V +TR    LII       
Sbjct: 536 ----------VVDLCAYELIREKTKRDISTELEDEDTRVDFVAITRPVHTLIII------ 579

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
                      D +    +            S       + + +          R +   
Sbjct: 580 ----------TDHLERYANKYAIKSGKPTAPSTEHYSITSVDPNIEAYSAFINGRFDQAI 629

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------DNQTFNRGLI 785
             +D       + + I++++ +  +++ S + +                       +G  
Sbjct: 630 NALDRYA---WIRNLIRDNMKKNNVISFSLLQSLQDPFQFLKEHILGLKYKVPAMKQGSE 686

Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
           IH L +++F     + +              P         +I +++++       +   
Sbjct: 687 IHTLAELLFKKESTELE-------------IPPNYRPQ-YDNILKVIDDMQ-KRYGAVQI 731

Query: 846 YSEVSVSGK---INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
            +E  V+     +    K  I+ G++D +  S    +I +YKT     ++ E     H  
Sbjct: 732 SAEEEVTLPGQYLLPEAKSFILYGKLDAVFQSGDYYYIVDYKTDKTTTRQKE-----HTK 786

Query: 903 QLSIYEKILKDSYPN------KSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
           QL  Y    K  Y          +  L+ Y+S      +   K++    E+ 
Sbjct: 787 QLHFY----KTIYSKSQSLDRSKIKTLIAYISLRT--PVNTGKVDYRLEEVD 832


>gi|103485553|ref|YP_615114.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
 gi|98975630|gb|ABF51781.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256]
          Length = 1112

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 95/746 (12%), Positives = 210/746 (28%), Gaps = 112/746 (15%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKK---AQTLQQASQTQCIEE 64
           +  E  + I                    L +      +L      Q + +A   + +E+
Sbjct: 246 AAGELADRIATARPDAAADMWIGTFHAFGLDLIRRYYELLDLPSNVQLIDKAQAIELLED 305

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
           +  L+          P + ++  +I       K++L    +   + R+        +   
Sbjct: 306 QLPLMGLNHYHDLRNPDQGLV--KILSAISRAKDELVTHAEFTRRAREALAAAVSAEQVE 363

Query: 125 ASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            +     A  +   Y +A  K   +DF DL++    L+ + D    +R ++ Q  + +L+
Sbjct: 364 VAERACEAARVYEIYADALGKAGAVDFGDLVMLPTLLMMRNDC---VRAQVAQRHSMVLV 420

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD +     ++  L  +             L+ VGD +QS+Y + GA    + + +R
Sbjct: 421 DEYQDVNRASARLLMELYRE----------GARLWVVGDARQSLYRWRGASSANMAQFER 470

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                          + L  ++RST  I+ +              +  +      +S+R 
Sbjct: 471 DF--------SGGKRLPLDRNYRSTEHIVGL-----GRGFARDMRAGKNGLAYNAKSARE 517

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 +L   +  + +                             +A  I+++      
Sbjct: 518 EPGSATRLLVGLDDRCEG--------------------------ELLAAEITSLKQAG-- 549

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   +      VL        ++  +       + I+          +   ++DL+
Sbjct: 550 --------VPLSQQAVLAPTNNRLDIVAGILAE----HGIATTHLG--SFFEREEVRDLL 595

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE---YIQKFANCGIS 479
           ++   +    +  + V +           DI  I                          
Sbjct: 596 SVIALLAE-ANGGALVRVAALREIGVGASDIGVIVRAAQAARVPLLSLLATASTLTGMSP 654

Query: 480 KFQHVIKYIH-ELIHIAQFCSPHDFFT-LILGAKKGRQQFI------SRFGNEVIDVLDE 531
                ++ +  ++  + QF    +     +L      +                +  L  
Sbjct: 655 TGGEALEQLGLQMAGLDQFTPAFEVAASWLLDRSDYLRDLAVAPDASGSLSRAALLALLG 714

Query: 532 FLNFTLRNEQ--NSYSSLQELISELEQYPPTIKRAH--SANHNEVRIMTVHTAKGLESPV 587
           FL+      Q      +L+ + S +        R     A+ + VR+MT+H AKGLE P 
Sbjct: 715 FLDQRELGGQPLTPARALKRMRSTVLLADDRDLRDATLGADADAVRLMTIHGAKGLEFPA 774

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V +V    Q       +    +P    +P                       ++   EE 
Sbjct: 775 VHVVGLHDQCLPGAFRRDDSPLPPGLVEPET---------------------REGHLEEE 813

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             L +V ++RA D L +      +   +        +      +                
Sbjct: 814 ECLFFVAISRAEDHLRLYHSELANVRGRKPSPFLGRLGALERRHLPAAATAAGAAGSPLS 873

Query: 708 EWIAYEWSTHHPENTPLEREETIKQL 733
                  +     +          + 
Sbjct: 874 PISTDRINLFDVRDFDSCPLRIAYRR 899


>gi|224282512|ref|ZP_03645834.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139664|ref|ZP_07801857.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132174|gb|EFR49791.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171]
          Length = 1401

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 99/850 (11%), Positives = 231/850 (27%), Gaps = 103/850 (12%)

Query: 31  INKYVSLSMETGNPT-ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89
           ++  +  +M  G+ T + +    ++   Q      +  +           P+  + T+  
Sbjct: 160 LSHAIGNAMIGGSTTTMDEAIGRVRAWDQAFL--AQLDIAIGDTPVPDEAPKAKVPTKNK 217

Query: 90  NKKSPDLKEKLKKSQDEFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
                    K ++ + +     +        + +     LTL       YE+ K+   + 
Sbjct: 218 KDTEETFAAKQEEYRAQLRDICVYKCAQLRDVTRRRETLLTLV----EEYEQEKRVQNMA 273

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           +F D  I    L+ +      I  +  +   H+L+DE QDTS  Q  ++ +L        
Sbjct: 274 EFSDFTIAAYQLVARFPS---IGERYRRRYTHVLLDEYQDTSTTQAMLLATLFHPQSADA 330

Query: 208 NTHSSPRT----------------------LFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           +   S                         + AVGD  QSIY++ GA P      ++   
Sbjct: 331 DADRSSSRWREAARSAGGWSKDGVGLSRSAVNAVGDPFQSIYAWRGASPGAFRMFQKDF- 389

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                         L ++ R+T  +L   + +              T  +R    R G  
Sbjct: 390 ----GMPSDAKPYPLSVTRRNTCIVLRAANNL--------------TEPLRIPPRRAGSS 431

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              ++    +S  D+                  ++ A    + IA              +
Sbjct: 432 LMREVDVANLSAMDNAAEGTIGVLGFATFGQEADAVARFAKQAIAR---------YRKDD 482

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                     + VL R +                  ++ +      L +   ++DL+AL 
Sbjct: 483 AATAASDTPHVAVLFRGKTHMAQFAQELE----RAGLTTLVVGYSALLERPEVQDLIALL 538

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
                  D  S + +L +P F    + + ++     + ++   Y     +  I       
Sbjct: 539 HATADHTDSASLMRLLATPRFGLGSESLTRLAGMAEDLDSQCRYRALVESGIIGSGSDGA 598

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN-------FTLR 538
           +            S     + ++    G     +   ++V  ++ ++ +           
Sbjct: 599 RADDGHDEAIVSTSID---SGLVSEADGGSDIATFADSQVKAIVKQYRDRVPHAVFLIDM 655

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH----------TAKGLESPVV 588
             ++   SL       ++               V  +T H           A  L+   +
Sbjct: 656 MMRDDLPSLLSRRGGFDETTSRRIIQAGEVLQRVHAVTNHPLKEVIDAAVRALNLDIDTI 715

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                 +        +    + S+                  +   +         EE  
Sbjct: 716 VAQAVKNPSQPVNPTQARSPLQSVAALVDTYTQEIVEGVNPTLRGFMSWVDSLGQIEEDT 775

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK-KIKLTNSINKD 707
               V  T A   L+    +           +    V+ S      V+   +       +
Sbjct: 776 --AAVPDTPADVVLMTIHQAKGLEWDAVAVVSMQSGVFPSNQGGLHVELDAEHPGGGAGE 833

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            W   E+                   +D   +P+       +D     +     ++    
Sbjct: 834 SWTPPEYKATVRSWADDPAAVPAPVRVDAGILPRFPHDANPDDAPVETLRALDDVEVIDD 893

Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                   D ++ + G            +      ++  +   +  +   A E +   ++
Sbjct: 894 ----EFYGDLRSKDIG----------DDMDVADPSSWYLTQEEEYGRRLLADERRLAYVA 939

Query: 828 ITRLLENPMM 837
           +TR  ++ ++
Sbjct: 940 LTRAKKDALL 949



 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 97/360 (26%), Gaps = 71/360 (19%)

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
              Q        T  E+   +  W   + +           KL+              +  
Sbjct: 1041 RPQGFFVGDHATEYERDVVEEAWNAPLEEREQGGGPTWPAKLSEETLSKLTGGMSGDSVL 1100

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
              + P       + L+++  +    F   + +I+         +   G+ N+ +L +   
Sbjct: 1101 VTDDPDSLLARARMLVEDPDLMPWSFGRGEREIDRYVRRQAEHLLEHGRQNVTALQARAG 1160

Query: 779  ------------------------TFNRGLIIHKLLQVIFTL------------------ 796
                                        G + H   +                       
Sbjct: 1161 HMTQREERGYWRGLIRPIPRVASPAAEAGTLFHAWAEQFINAYGDGQSIDADGIGAYDSS 1220

Query: 797  -----------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
                           R++ +        K       +  L    R L     +      +
Sbjct: 1221 SIETGTAGTCREPVTRESLLHDLSELEMKSDTLTAKERQLTVWQRRLAESTWSE--RRPA 1278

Query: 846  YSEVSVSGKINCPKKDIIISGRIDQISISQ-------QNIFIFEYKTHHHVPQEIEHIPY 898
            ++E  +   I     D+I++G++D +           +   I ++KT    P++ + I  
Sbjct: 1279 WAERQIVVSIP-QLGDVIVNGKLDAVFHGGLDANDPTKQYTIVDWKTG-CKPRKPQDI-E 1335

Query: 899  THIAQLSIYEKILKDS--YPNKSLVCLLIYVSEP----KVFIIPQNKLNKAFAEISTKIP 952
              + QL  Y  +L      P   +   L Y+SEP    +          +  AE+S+ IP
Sbjct: 1336 HKLVQLDWYRLLLSYIEHVPLDRIDATLYYLSEPDEGARELHARAKTEQEILAELSSGIP 1395


>gi|295701461|ref|YP_003610462.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
 gi|295441784|gb|ADG20951.1| UvrD/REP helicase [Burkholderia sp. CCGE1002]
          Length = 568

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 92/687 (13%), Positives = 188/687 (27%), Gaps = 163/687 (23%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGN---------PTILKKAQTLQQASQTQC 61
           E          P      +   K   L  + G             ++    +   S  Q 
Sbjct: 14  EHRRHCVAIACPGAGKTKTIAAKAALLLTQPGAIVGAVTFSKDAAVELRDRILALSGAQA 73

Query: 62  IEERFS-LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ------DEFIKIRDRF 114
                +    S    Q   P         +     L  ++          +E + + +R 
Sbjct: 74  KNRLIAGTFHSLAFRQLGQPGGKRRDIASDGDRMGLIARVIAELGLEWKPEEVVPVIERI 133

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            T         +      L   Y+ A ++N  +DF+D++      ++  D++ +      
Sbjct: 134 KTNFGRVEAGTAD---AQLYEAYQAALERNGKIDFQDMLRLAVAGMEAGDITPY------ 184

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                +L+DE QDT  +Q+  +    +          +   +  VGD+ QSIY F  A  
Sbjct: 185 -RFTDLLVDEFQDTDPLQYRWVELHAK----------AGAQVTVVGDDDQSIYGFRAA-- 231

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
               R                  + L  ++R  ++IL+  D+V     +       +   
Sbjct: 232 -LGFRGMESFAASFNA-----QRVVLGSNYRCRSEILSAADRVIRNNADRIPKVLQAER- 284

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                   G  G+V                          +  +       A      + 
Sbjct: 285 --------GAGGSV--------------------------ATKRSDDEYADAVAAVELLQ 310

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++ +              K   +L R  +    I  + R     + +         + +
Sbjct: 311 PLLASG-------------KSCAILARTNRILDPIEAVCRS----HGVPYFRASGSSVLN 353

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-- 472
                 +  L   +  ++ +      L + L     +        R     + +  +K  
Sbjct: 354 RPQGALMCNLLEIVEGRKQNG-----LDAVLGYMGMNSAHLGSLHRDMGSALVQRQKKDL 408

Query: 473 ----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
                     + ++  +K + E   + +          +L       +            
Sbjct: 409 IALGLPEDTATAYRAFMKRLGEWQLMCERQFYSLALDGVLELMMTYAK------------ 456

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPV 587
                +  +R  Q +Y  L  L     +    +KR ++   +  + + T+H++KGLE   
Sbjct: 457 ----ADPAIRAIQGTYDVLSRLNGTFAERIEYLKRDNNKPADGALVLTTMHSSKGLEWDH 512

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V++      V                                          +KST+ E 
Sbjct: 513 VWITRAEEGVVPD---------------------------------------EKSTESEE 533

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEK 674
            RL YV MTRA D L+I         +
Sbjct: 534 RRLFYVAMTRARDSLVIATIRKNPVSR 560


>gi|229496639|ref|ZP_04390353.1| putative ATP-dependent helicase [Porphyromonas endodontalis ATCC
           35406]
 gi|229316536|gb|EEN82455.1| putative ATP-dependent helicase [Porphyromonas endodontalis ATCC
           35406]
          Length = 561

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 81/576 (14%), Positives = 165/576 (28%), Gaps = 85/576 (14%)

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK-----ISVVGNDRFILTDHLAIKDL 421
           + R  + ++I +L    K+   +         ++      +  V  +   +T+   ++ L
Sbjct: 44  EDRHYRPQEIAILANTNKEVAALAGCLITYAQEHPEKAPLLKFVSGEALNITNSAIVRFL 103

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           ++L +       DLS        L+             R       + I        S  
Sbjct: 104 ISLLK-------DLSEGRTRNKALY-------------RTALVHYEQLISNAPKGAESGL 143

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
               +     +    + S +D    I+           +        +   L+       
Sbjct: 144 LPFDQLHSSCLEQLPYLSLYDLVESIIHQLYPLIAPADQP------YITALLDQLYLYHC 197

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +  + LQ  +   E              + +RIMT+H +KGL  P+V L      + + K
Sbjct: 198 DEVADLQGFLDWWEVKGIKTTLPFDDGGDAIRIMTIHKSKGLGFPLVLLPFLDWDLSTGK 257

Query: 602 HI-------KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
           H            +   +     I      SK             K     +   L YV 
Sbjct: 258 HKSSYIWSHPSPLLTQEIGCQLPIVPLEMSSKLAKTFYIGDYYKEKTDAIIDRLNLFYVA 317

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           MTRA   +++     T  ++K        ++       E  K I      +  +    + 
Sbjct: 318 MTRAKQGIVLWLPDPTELDEKKVTFDLSKLLGSLLQQSEIEKLITPIPPHSGVDSGDKQE 377

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
            T      P     T +                                   K       
Sbjct: 378 QTKPSYPFPGISPHTERTQR-----------------------------IAIKRTGSQAY 408

Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
            +N++   G  +H +L +I     H   N +     + A L   +E ++++  + + L  
Sbjct: 409 KENRSIRFGSAMHYILSLI--NTHHDVDNAVEQALNEGALL--REEKESIVEYLQKELSR 464

Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEI 893
           P +    S +    V     I    +    + R D+I ++      + +YK    +P   
Sbjct: 465 PEVALWFSPEVQ--VFNEQTILLSLQSH--TYRPDRIVVTPQNEAIVIDYKFGKPLP--- 517

Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
                 +  Q+  Y ++L       ++   L Y + 
Sbjct: 518 -----RYRRQVQRYMQLLSKM-GYSAVRGYLWYFAS 547


>gi|227810114|ref|ZP_03989027.1| UvrD/REP helicase [Acidaminococcus sp. D21]
 gi|226904694|gb|EEH90612.1| UvrD/REP helicase [Acidaminococcus sp. D21]
          Length = 611

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 59/410 (14%), Positives = 125/410 (30%), Gaps = 54/410 (13%)

Query: 32  NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91
             ++++     +    K    L +       E   ++     +          +   + +
Sbjct: 208 ETFLAMLASGADLKPSKTKDALLEL------ENARAIYHEALVADDLETVLPFMN--LIR 259

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
            +      +K+ ++  IK++             A   L   L    EE   +  +  F  
Sbjct: 260 AAGKAAPLIKEWKEALIKLQGYARNEVAIPYAKAWNGLLHRLADRLEEESLRQEIFSFSF 319

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           L      LL+       I        ++I++DE QDT+  Q E++  L+        +  
Sbjct: 320 LAGRAVSLLRNYPE---ICRAYQHRFDYIMVDEFQDTNEQQKELVYLLSG----ATASEL 372

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
             + LF VGD KQSIY F GA+       +              + I +  +FRS  +I+
Sbjct: 373 RGKNLFIVGDAKQSIYRFRGADVTVFRVVRDDI------IHSGGTDIVMADNFRSAPEII 426

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              + +F                +        +     + ++  +  D            
Sbjct: 427 ESCNCLFRDLLGTDPQKAVMAQDLVPHQKATQKPILAIIDQEDGTFAD------------ 474

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                    +    A+ +A  I  ++ +           +   DI +LV        +  
Sbjct: 475 ---------AQRAEAQWVAQKIDAIVKS--------HEELGYGDIAILVP----AIRLAE 513

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                  +  I     D     +   + D++ +   +LS + D +   +L
Sbjct: 514 PYAAALAEAHIPYTMTDGKGFYEQQEVIDIITIMTAVLSPDVDWAMAGVL 563


>gi|295130848|ref|YP_003581511.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|291376112|gb|ADD99966.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|313771945|gb|EFS37911.1| HRDC domain protein [Propionibacterium acnes HL074PA1]
 gi|313809674|gb|EFS47408.1| HRDC domain protein [Propionibacterium acnes HL083PA1]
 gi|313812639|gb|EFS50353.1| HRDC domain protein [Propionibacterium acnes HL025PA1]
 gi|313830010|gb|EFS67724.1| HRDC domain protein [Propionibacterium acnes HL007PA1]
 gi|313832985|gb|EFS70699.1| HRDC domain protein [Propionibacterium acnes HL056PA1]
 gi|314972842|gb|EFT16939.1| HRDC domain protein [Propionibacterium acnes HL053PA1]
 gi|314975735|gb|EFT19830.1| HRDC domain protein [Propionibacterium acnes HL045PA1]
 gi|314983666|gb|EFT27758.1| HRDC domain protein [Propionibacterium acnes HL005PA1]
 gi|315080863|gb|EFT52839.1| HRDC domain protein [Propionibacterium acnes HL078PA1]
 gi|315095780|gb|EFT67756.1| HRDC domain protein [Propionibacterium acnes HL038PA1]
 gi|327329838|gb|EGE71593.1| ATP-dependent DNA helicase [Propionibacterium acnes HL096PA2]
 gi|327442641|gb|EGE89295.1| HRDC domain protein [Propionibacterium acnes HL043PA1]
 gi|327443720|gb|EGE90374.1| HRDC domain protein [Propionibacterium acnes HL043PA2]
          Length = 706

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 82/557 (14%), Positives = 150/557 (26%), Gaps = 164/557 (29%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA    +L           
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGARADYLLNFVAD------ 288

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 289 --HPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I +L R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAILYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPEGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +L +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 QLAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDTMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEMASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMV 685
           +  N  +     +   +
Sbjct: 565 SGGNRDRQGISRFLRGL 581


>gi|78776291|ref|YP_392606.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
 gi|78496831|gb|ABB43371.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251]
          Length = 903

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 96/585 (16%), Positives = 180/585 (30%), Gaps = 126/585 (21%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN----CVL 147
                 +    + DE +         +            K L   Y ++KK        L
Sbjct: 241 DYRTFAKCYTPAMDELLHKIKDAIKNQNRGREQNFFFSLKGLVDTYIKSKKALYMDDNEL 300

Query: 148 DFEDLIINTNDLLKK-RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
            F D+      +LK   D S ++ +++D +I HIL+DE QDTS++Q+E+++ L ++   G
Sbjct: 301 SFSDVTYLVYQILKLLGDDSEFLYFRLDAQIEHILLDEFQDTSILQYEILKPLIDEITSG 360

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           +    +  + F VGD KQSIY F G          R              + +L  ++RS
Sbjct: 361 EGIFKNG-SFFFVGDVKQSIYRFRGGVSALFESVARE---------NSTHVEKLLTNYRS 410

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             +I++ V+ VF          +                G V++ +      +       
Sbjct: 411 QREIVSFVNSVF---------IDKIKNYTPQLYREAANYGYVEVVQNDEVLEE------- 454

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                                 +   + +++                 +I +L    +D 
Sbjct: 455 ----------------------VVAQVKSLLALGADID----------EIALLCATNRDG 482

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +            I VV      L +  ++K L+   +F            +     F
Sbjct: 483 SSVKEALEAE----NIEVVTETTTKLINQNSVKALLEYLKF------HYFGEAIYAHNFF 532

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                +              +  + +     +   Q V   I E    +   +   F   
Sbjct: 533 ALISQE--------------FRPMCRIDFNRVELLQVVKGAIREFSLFSDSFNLLRFLDA 578

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           I                   + ++  L      E+   S                  A +
Sbjct: 579 I----------------SRYNDIEALL---FEYERMDVS------------------AAA 601

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           +    VR++TVH +KGLE   V ++D  ++    +    +           I + I   +
Sbjct: 602 SELRGVRVLTVHKSKGLEYEHVIVMDRLTKTPPSREA--VIYEYDGLTLENIYLRIKGRE 659

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           S +   +  +   K    E+     YV  TRA + LI+   S  S
Sbjct: 660 SVDEKYALALLKEKALQVEDSLNAHYVAFTRARENLIVVLKSKES 704



 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 16/153 (10%)

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            N G+ +H +L+++         N   S   K   L    E K++   +  LLEN    +
Sbjct: 762 INFGIAMHYMLEMLGEFKTKNIANAKDSMINKYGALLQESEIKDIQKRVEMLLENSEFIS 821

Query: 840 AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
            +    Y E ++  K +           ID +  S++   I +YK+ +          Y 
Sbjct: 822 IVDGVCYREKALRYKNSLRY--------IDLLVRSKEGYNILDYKSSNL-------YMYE 866

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
           H+ Q+  Y K +++    KS +  +IY+ E ++
Sbjct: 867 HVKQVRSYVKAVEEI-TKKSALGYIIYLLEDEI 898


>gi|218291367|ref|ZP_03495321.1| UvrD-like DNA helicase, C terminal [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238771|gb|EED05986.1| UvrD-like DNA helicase, C terminal [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 609

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 71/579 (12%), Positives = 159/579 (27%), Gaps = 76/579 (13%)

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK--FQHV 484
            + +  D L+    LKSP    S++D+      R      +   +       ++   +  
Sbjct: 1   ALDNPLDSLALAAALKSPFVGVSDEDLAAARIVRPRGPLWHAVREAARETEGARGALRSA 60

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNE--Q 541
           ++ +     +A+  SP D    I    +          G+     L++ +     +    
Sbjct: 61  VERLERWRGLARTRSPGDLLREIAREVEIDLYLRAMPRGSARAANLEQLIRLAQLHAPHA 120

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               S   ++  LE+    +  A  A+ + V +MT+H +KGLE P V+++  G + F   
Sbjct: 121 GDLYSFLAMVRGLEEADVDLGHAQGASGDSVAVMTIHGSKGLEFPHVYVLSLG-RQFPRN 179

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN-----------RL 650
                             +           ++    +L+ S  EE             RL
Sbjct: 180 KSSIALHRRLGIGATMCDVETGVHWRTIPSIAVDHANLEASRAEEARVLYVALTRAKERL 239

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD----------------------MVYDS 688
           + VG       L      +    + +    +                         V  +
Sbjct: 240 VLVGHAGKVASLADAAEGHDDEGRLTPVAFFNAKTYASWILSALMRHPDGAWLRAQVEGA 299

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN----TPLEREETIKQLMDEQKIPKKLF 744
                    ++    +  D     + S   P       PL   E +++ + +        
Sbjct: 300 RVALSDAPGVRFELEVEVDGRPQGQKSGVEPRPSLSKAPLPPAEEVERELRQLWAGPAWR 359

Query: 745 SPIKNDINEPYILNPS------------------------TIDTKGKTNLESLLSDNQTF 780
                  +E      S                                      S     
Sbjct: 360 YRAVRIESEERGPRVSLPSKLTATDIRRLFAERELRARGRHAGAVLDDPAFVRQSGASPR 419

Query: 781 NRGLIIHKLLQVIF--TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
            RG+  H  +Q                     +   L            +     + +  
Sbjct: 420 ERGVAFHAFMQRAPIKRYASPDDVRRAAQALLEQGLLDERMAAALDPDDVIAFFASHLGR 479

Query: 839 TAMSCD-SYSEVSVSGKINCPKKD----IIISGRIDQISISQQNIFIFEYKTHH-HVPQE 892
             ++ D  Y E     +++    D    +++ G ID +    +   + +YKT       +
Sbjct: 480 RVLAADEVYREQPFFYRVDVRAGDAQAPVVVQGVIDCLIRDARGYAVIDYKTDQARDASD 539

Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
           ++ +   +  Q++ Y   ++++   +     L +V   +
Sbjct: 540 LDRLVRAYEPQVATYAAAVREAVGTEP-EVYLYFVHARE 577


>gi|83310516|ref|YP_420780.1| superfamily I DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
 gi|82945357|dbj|BAE50221.1| Superfamily I DNA and RNA helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 649

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 82/596 (13%), Positives = 165/596 (27%), Gaps = 153/596 (25%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           +        +     +D  +         K+     A+L  A      Y+ A  +    D
Sbjct: 150 LGDDVRKPTDVFGAYKDRLMSPAAALAEAKV--RNDATLVEAAEAYGRYQRALAEEGGFD 207

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F DLI+     L++ +     R +I    +H+LIDE QD +  Q  ++R L         
Sbjct: 208 FGDLIMELVRGLEEDEA---YRARIAGFFDHLLIDEYQDINPAQERMLRLL--------- 255

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
             S    L+AVGD+ Q +Y++  A+P  +L  +              ++  L  ++RS+A
Sbjct: 256 -RSEGARLWAVGDDDQCLYAWRSADPAFILGFETAWP--------DPALFRLSRNYRSSA 306

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            I+     +           +     + H +SR+                          
Sbjct: 307 TIVNAAGALIGANRRRHAKDQ-----VPHSASRLAL------------------------ 337

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                 ++         A  +   +  +            R +   ++ VL R       
Sbjct: 338 ------TIAGLDDDEDEADYVLRVVKGL----------SGRGMPWNEMAVLYRAGHVGSR 381

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
           I            I +V            ++    L R + + +D  +            
Sbjct: 382 IQIRLAE----AGIPLVVRGAGEFWQLGPVRLTAGLARLLSNPQDMDAR----------- 426

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                  +   +   + + +  +K        +  + + +  L+  A    P +      
Sbjct: 427 -----AMLGHGKRVDKLLQQAPEKIDADVP--WPALCRQVGRLVS-ATARPPGEEGLQWR 478

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                     +  G      +  F+       ++                    R   + 
Sbjct: 479 DLAFTAADLAAECGT-----VAAFIALMEEQRRS-------------------LRRAESG 514

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V + T+H AKGLE   V +    + +  H+                           
Sbjct: 515 GDAVVLSTIHGAKGLEWSAVVVAGCEADLMPHESSPD----------------------- 551

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                           EE  RL+YV  TRA   L++   +        +      +
Sbjct: 552 ---------------LEEERRLMYVAATRAKRWLVLSFAAERRKAVAPSPYIAEML 592


>gi|134287620|ref|YP_001109786.1| UvrD/REP helicase [Burkholderia vietnamiensis G4]
 gi|134132270|gb|ABO60005.1| UvrD/REP helicase [Burkholderia vietnamiensis G4]
          Length = 573

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 80/687 (11%), Positives = 180/687 (26%), Gaps = 154/687 (22%)

Query: 1   LKNR-FGLS---LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
           L+     ++     ++     K  W L           +  ++       ++  + +   
Sbjct: 15  LRRHCLAIACPGAGKTKMSAAKAAWRL------QDPTAMVGAVTFSKDAAVELRERILAL 68

Query: 57  SQTQCIEERFS-LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---EFIKIRD 112
           +        F+    S    Q   P +       +     +  ++        +  +   
Sbjct: 69  APPDAKRRLFAGTFHSLAYKQLHRPGRGRPDIASDGDRLGMLGRVLAELGYDWKVEEAVP 128

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                KM        +    L A Y++A ++N  +DF+D++    + +++ D++ +    
Sbjct: 129 IIERIKMNFGRADEGSAEATLYAAYQDALERNGKIDFQDMLRLAVEQMQRGDITPY---- 184

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  +L+DE QDT  +Q+  +               +   +  VGD+ QSIY F  A
Sbjct: 185 ---RFTDLLVDEFQDTDPLQFRWVELHAR----------AGTHVTVVGDDDQSIYGFRAA 231

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                                    + L  ++R  A+IL   D V     +         
Sbjct: 232 ---LGFGGMERFASTFEA-----QRVVLGSNYRCRAEILAAADLVIQNNIDRMPKV---- 279

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                            L     +          + +     +L                
Sbjct: 280 -----------------LHAARGAGGAVAARRFDDEYGDAVAALEVLHP----------- 311

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                           ++       +L R  +    I  + R     + +         +
Sbjct: 312 ----------------KLAAGASCAILARTNRILDPIESVCRS----HGVPYYRASGGSV 351

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ- 471
            +      +  L + +   + +     +L       S  D+  +  +        +  + 
Sbjct: 352 LNKPQAALMCNLLQVVEGHKQNG-IDAVLG--YMGMSSYDLGALHKRMGTAFVQLQKQEL 408

Query: 472 ---KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
                     + ++  +K + E   + Q          +              G+  I  
Sbjct: 409 VGLGLREDTATAYRAFMKRLGEWQALCQRSFHSLALEGV-----YEWMMTYAKGDVAIRA 463

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM-TVHTAKGLESPV 587
           +    +   R   +    ++ L              ++   + V ++ T+H++KGLE   
Sbjct: 464 IQCIYDVVSRLNGSFTERIEFLKR-----------DNNKPGDGVLVLTTMHSSKGLEYDH 512

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V++  +   V                                              + E 
Sbjct: 513 VWISRSEEGVVPDDKSP---------------------------------------ESEE 533

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEK 674
            RL YV MTRA D L I         +
Sbjct: 534 RRLFYVAMTRARDSLTISSIKKNPVSR 560


>gi|258650842|ref|YP_003199998.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258554067|gb|ACV77009.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 676

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 101/735 (13%), Positives = 212/735 (28%), Gaps = 126/735 (17%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-LKKAQTLQQASQTQC 61
            R    +      +               +      +      + L  A ++   +    
Sbjct: 63  RRAADEMVSRAARLCTQPDAGQRLAGGTFHAVAHAVIGRHTEALGLPPAVSVLDRADATD 122

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
           + +          T +  P+              L +   ++ +  +  R    T   + 
Sbjct: 123 VMDLLRHDHGLDGTDRRFPRAA-----------TLVDIYSRAVNTGVPARALIKTDFGW- 170

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                +     L   Y   K+   +LDF+DL++    LL    V   I        +H+L
Sbjct: 171 -VQPHVDAVMELFRAYVARKRDRGLLDFDDLLLAWRSLLADPVVGPQIA----GRWDHVL 225

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD +  Q +++ +L                L  VGD+ Q+IY F G++   +    
Sbjct: 226 VDEYQDVNATQVDIVHAL----------RPGGHGLTVVGDDAQAIYGFRGSDHAHLRSLV 275

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +           + +++ L  +FRS   +L + + V       +  +E       H   R
Sbjct: 276 QELP--------EVTVVRLERNFRSHQRLLDLANVV-------RPGAEGEHRITLHSDRR 320

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            G+   +                                 A   AR I  ++        
Sbjct: 321 EGRPARLVRC----------------------------HDAPAEARIIVDSVLEAHQKGR 352

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                     + ++  VL+R    + L+            +  V        +   +KD 
Sbjct: 353 ----------RLREQAVLMRAAAHSDLLEVELTA----RGVPFVKYGGLKFLEAAHVKDF 398

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           +A  R + +  D++++  +L+             +     + E   +  +       +  
Sbjct: 399 VAAVRLLDNPRDEVAWYRLLRLHD-GIGPARARSLLGSLADPELSADLDRHAEAVAAAPA 457

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              +     L  +A   S +       G  +  +  ++    +    L +        +Q
Sbjct: 458 MSRVALAASLSTLADARSRNRIGERARGCLELLRPLLTARYRDWSARLGDLERLVGAADQ 517

Query: 542 NSYSSLQELISELEQYPPTIKRA----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           +    L   ++EL   PP          S + + + + TVH+AKGLE PVV ++      
Sbjct: 518 S--PDLAAFVAELTLDPPASTSDLAGPPSQDDDYLVLSTVHSAKGLEWPVVHVLHLVDGS 575

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F                                              EE  RL YV +TR
Sbjct: 576 FPSDMALGTP----------------------------------EGVEEEARLFYVALTR 601

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A+D+L +       + + +            F +D  + ++++ +            +  
Sbjct: 602 AADELNLYAPLRMPHHRHARDDRHSMAPLSRFLDDAALDRVEVVDLTPPRPGADPAGAAA 661

Query: 718 HPENTPLEREETIKQ 732
                 L     +  
Sbjct: 662 RGTRVALPDLADLWA 676


>gi|327329914|gb|EGE71668.1| ATP-dependent DNA helicase [Propionibacterium acnes HL097PA1]
          Length = 706

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/557 (14%), Positives = 150/557 (26%), Gaps = 164/557 (29%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA    +L           
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGARADYLLNFVAD------ 288

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I+L  ++RST +I+ + ++V       +                      ++
Sbjct: 289 --HPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE--------------------ALE 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V      +  P+        D        +  A  +A  I +              
Sbjct: 327 HGRGVTLVSRGRSGPEPIYQALGDD--------ASEASAVAMWIESRHAAG--------- 369

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFI 428
            I   +I +L R       +            I  +        D   ++  L AL R  
Sbjct: 370 -IPWSEIAILYRINSQAAQLETALAE----RSIPYLVKGSERFYDRGEVRRSLDALARLA 424

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
             +            PL  F                   +     A  G    +   + +
Sbjct: 425 ADEPG--------ADPLRAFD-------------RILAAQGWSAIAPEGEGDVRQRWESL 463

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             L  +                                               +   +L+
Sbjct: 464 QALHDLTVSVV-----------------------------------------DDGTRTLE 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +L +   +   T     +   + V + T+H +KGLE  VV L      +           
Sbjct: 483 QLAAVFSRRAAT---QEAPVGDGVTLATLHASKGLEWDVVALYGINDMMVP--------- 530

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                      I     +      RLL+VG+TRA   L +    
Sbjct: 531 --------------------------FIMAEAPAEVASERRLLHVGVTRARRDLWVSYSW 564

Query: 669 NTSNEKKSNQRTWYDMV 685
           +  N  +     +   +
Sbjct: 565 SGGNRDRQGISRFLRGL 581


>gi|300856009|ref|YP_003780993.1| putative helicase [Clostridium ljungdahlii DSM 13528]
 gi|300436124|gb|ADK15891.1| putative helicase [Clostridium ljungdahlii DSM 13528]
          Length = 733

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 99/669 (14%), Positives = 204/669 (30%), Gaps = 92/669 (13%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERF-----SLLSSFFLTQKFTPQKNIITQEINKKSP 94
             G     K    LQ+        + +       +    L++  T + +  ++   K   
Sbjct: 101 AAGLDENFKVIDDLQKIFYLDNAVKIWRKLGGEKIYRSLLSEYGTKKYDEKSERWWKDFL 160

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            + + L           ++    +      + + +  Y+   YE+    N  +D+ D+++
Sbjct: 161 QISDVLISELKLNGITPEKVEENRELLGNNSIIYILNYIYFRYEKMLNLNGYVDYNDILV 220

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
                L   +    +R K  Q+ + +  DE QD++L+Q +++  ++E    G +      
Sbjct: 221 LAYKALISDED---LRKKFQQKYSFVFEDECQDSNLVQCDILSIISERV--GADNKKREC 275

Query: 215 TLFAVGDEKQSIY-SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
            L  VGD  QSI  SF  + P    +  R                 +  + RST +I+ +
Sbjct: 276 NLVRVGDLNQSIMGSFTSSNPIYFKQFLRE----------ADKNYVMNRAGRSTRNIMNL 325

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + +               T   H   R  +    Q    +    D +     E     +
Sbjct: 326 ANSL------------VEYTVKNHPEKRCREALRYQKIHPIEDVEDLKNPEVDEYGIYAY 373

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                E         +                  K       + +L+        I    
Sbjct: 374 SMSSWEDVKKRTIEVV---------------KSFKSKHSDMTLAILIPFNSHVKEIAEEL 418

Query: 394 RFLKNDYK-ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN----- 447
           R  K +   +S   ++R  +     I  L  +  F+   +  + F  ++   +       
Sbjct: 419 RKNKIECDELSSTSSERLKI-----INILGKILGFLGEPDSPVKFRDLMYEIIEGDNEKK 473

Query: 448 ---FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
               +    FKI     E+      + K      + F+  I  +  +  I    +     
Sbjct: 474 NVIINNITSFKIEDIIKESVFKTTSVCKLEEIDKNIFEDFICKLRMVKDILANLNMP--L 531

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPP 559
             ++       +  +             L +          +N+  +L E+  EL     
Sbjct: 532 QELILYIGYELKLNNED--------KAILQYVASYVRHKNAENNSMTLDEISQELLDVRS 583

Query: 560 TIKRAH----------SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           +                    +V + T H +KGLE   VFL+   + ++ +    K    
Sbjct: 584 SAFTHICNVIYDIRGYEPVPEKVTVTTYHKSKGLEWDCVFLLYLNNYIYPYSIKGKFRSE 643

Query: 610 PSLNDDPGIPIWIPQSKS-----RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                D                 +N++  + I   ++    E  RLLYV +TRA   LI+
Sbjct: 644 HYYFKDEFKNPTAIGKAEVQKLLQNDVCYNPIIKAREEVICEKIRLLYVAITRAKKYLIL 703

Query: 665 CKHSNTSNE 673
             H + + +
Sbjct: 704 MAHYDENKK 712


>gi|303247976|ref|ZP_07334243.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
 gi|302490700|gb|EFL50603.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ]
          Length = 1070

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 100/675 (14%), Positives = 176/675 (26%), Gaps = 190/675 (28%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSM--ETGNPTILKKAQTLQQASQ 58
            L+ R       + +   +     P    +D    ++L+    +G    +  ++       
Sbjct: 534  LRERLARDAGMAEDAATEASQDAPALPWADTLHALALAAWTASGGQEPVLLSE------- 586

Query: 59   TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                          F T         +     +        L  +++    +        
Sbjct: 587  --------DASRRLFATVNPELSGARLRAAWRE--------LSLARERLTPLPPADTAGL 630

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                            A Y   K    +LDF DL+    + L        +         
Sbjct: 631  GL------------YAARYARQKSDWNLLDFTDLLEFWLEKL--------VAGSEQPTCA 670

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H+L+DEVQD + +Q  VI +L               +LFA+GD  QSIY F GA P    
Sbjct: 671  HVLVDEVQDLTPLQLAVIAALVGRDRA---------SLFAIGDPDQSIYGFRGAAPGVRA 721

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                              +  L  ++RST  +L +   +F                    
Sbjct: 722  ELLAAWP--------DLEVAALAENYRSTQPVLNLAAGLF-------------------- 753

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                   G   L  ++ S+             +    L +  +A+  A  +   I  ++G
Sbjct: 754  ------PGRAPLVSRLSSETP----------VASEIQLFEAPTAAGEAGWMGERIQALLG 797

Query: 359  TD--TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                T+  +     +   D+ VLVR       +    R     + I     +     +  
Sbjct: 798  GTSLTLARDLSAETLAPGDLAVLVR----FSGLIGPIRKSLERFGIPCAAPEADAFWNEP 853

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
             ++ L+A            +   ++  P                 + E       +    
Sbjct: 854  RVRLLLA------------AAGRLMGLP--------------APADVEKPPTLPDRVLAK 887

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
            G       +  I     +               A  G    ++    +            
Sbjct: 888  GPLGLSAYLGDIAPFDRLFWQGPEFRDLCRAFDAHGGWAGLLNHVATQ------------ 935

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                           +ELE               +VRIM++H AKGLE   VFL      
Sbjct: 936  ---------------TELELVGK--------RAQKVRIMSLHAAKGLEFAAVFLPALEDG 972

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +        +   P                                 +EE  RL YVG+T
Sbjct: 973  ILPFAGSDFLSGKPGHLAGQM-------------------------DEEEERRLFYVGLT 1007

Query: 657  RASDQLIICKHSNTS 671
            RA  +L +       
Sbjct: 1008 RAKSRLFLSHALRRD 1022


>gi|90413883|ref|ZP_01221869.1| hypothetical protein P3TCK_18424 [Photobacterium profundum 3TCK]
 gi|90325067|gb|EAS41577.1| hypothetical protein P3TCK_18424 [Photobacterium profundum 3TCK]
          Length = 795

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 101/703 (14%), Positives = 187/703 (26%), Gaps = 145/703 (20%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
           K P   E L                      T             +E  +K+  +L F+D
Sbjct: 134 KDPKTIELLMSFIGLVKAYMLPPKEVFEMSDTNREYLFIIDAYWQFETIRKEQKLLFFDD 193

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
            ++ +  +LK       IR    Q    I++DE QD +  Q+ +++ L            
Sbjct: 194 WLVESVHVLKTN---TNIRDFYHQRFKFIVVDEFQDINTAQYWLLKHLLA---------- 240

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               L AVGD  Q IY + G+ P+ +L                 +   L  +FR    + 
Sbjct: 241 PNAQLVAVGDVDQCIYKWRGSAPQFMLNFDEDF--------APATTYTLSRTFRFGHSLA 292

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
                + S  +                                        +    S  +
Sbjct: 293 LSASHLISNNKQRF------------------------------------HDFLTVSHDN 316

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
             D+L +   +      I  +I   +              +  ++ +LVR+   T L   
Sbjct: 317 VDDTLVEVIGSERQVGEIVQSIQQYLAQGG----------KPSEVAILVRRWSQTLLFEL 366

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG--RFILSQEDDLSF--VCMLKSPLFN 447
                +  Y++ V         +   + D+M+L   RF  ++    +     +L  P   
Sbjct: 367 AFLTKQIPYQMPVPSVLAHS-REVKLLLDVMSLATGRFNENEPHFRATSLFNLLCFPHCY 425

Query: 448 FSEDDIFKIC---TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF- 503
                +  IC        T+      +     G  K   +I+ ++ L  + Q  S     
Sbjct: 426 VPNAQLRPICDELANMPATQWELHAKKLEKAKGDGKLDTLIERVNLLARLQQKGSVKAVS 485

Query: 504 ------FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                     L A   + +  +    E I+ LD         +Q+   +LQ      ++ 
Sbjct: 486 VYRQYRAESQLDAWIWKTESTASEIEEAIERLDSIETVLDSMDQDCGKALQYFEYYSQKS 545

Query: 558 PPTIKRAH---------------------SANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               +                              V++ T+  AKG E   V+L      
Sbjct: 546 ASNSRSNSYQNPSSNSSQQQQQQGVIGGVDEAVQPVQLTTIFRAKGCEYNHVYLPYWDKD 605

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F                                   +       +  EE  RL YVG+T
Sbjct: 606 AFP--------------------------------YVNRSSAGISADTEEERRLAYVGIT 633

Query: 657 RASDQLIICKHSNTSNEK---KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           RA +Q  I        +    + ++     ++  +    + +  +               
Sbjct: 634 RAKEQAKIYYTVEPVKKGTYVRPDKNASQFVLEANMKVAQALGPMLYEAQPIPYHKSPIA 693

Query: 714 W-------STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
                           P E   T   + D       +  PI  
Sbjct: 694 QGYCKHLGRLDDMAEAPPEPVITAPSVKDGYSYKWAIEQPIPP 736


>gi|229821383|ref|YP_002882909.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
 gi|229567296|gb|ACQ81147.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333]
          Length = 1085

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 103/937 (10%), Positives = 247/937 (26%), Gaps = 126/937 (13%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
            + +    + ++  G       A+ L   ++ +     +             P++ +  +
Sbjct: 122 RATLLGEPAPALLVGADQDRILAELLAGHAEGEGRPVPWPP---------SVPREALALR 172

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK----- 142
               +  D+  +  ++  +  ++  +    +  +           + A Y E  +     
Sbjct: 173 AFRGELRDVLMRAAEAGWDGEELARQGRRRRRPE-----WVACAAVLAEYTEITQLSSVT 227

Query: 143 --KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
             +    D   ++      L   +               ++ D+ QD +L    ++ +L 
Sbjct: 228 PDRGAQYDVATIVDEAARALATWEADLPGHE--PPRWRTVIHDDYQDATLATARLLGTLA 285

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                         +L  +GD   S+ +F GA P  V R        +       ++  L
Sbjct: 286 GH----------GSSLLLLGDPDTSVQTFRGAVPSLVARAG---AAGSDVGAFGATVHTL 332

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              +R T  + ++V  +        G            +           W+    + D 
Sbjct: 333 RTVWRGTPALRSLVASLSDHLPALGGHERRRAAVAPAATGVPDGREEPGAWDPGRMRGDV 392

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                     +   S  +E      AR +A  +              +  ++   + V+V
Sbjct: 393 DPLGSDAVEVAVVRSAGEE------ARLVARRLRE---------VRLRDGVEWSRMAVVV 437

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFI-LSQEDDLSFV 438
           R+      +    R       + V        L D  A++ L+     +           
Sbjct: 438 RRTAQVAPLRRGLRA----AGVPVATASAEVPLRDEPAVRPLLRALAMLDAGTCTPEEAS 493

Query: 439 CMLKSPLFNFSEDDIFKICT-----------QRHETETVYEYIQK--FANCGISKFQHVI 485
            +L SPL       +  +             +R   E + E +     A     + +   
Sbjct: 494 WLLCSPLGGLDAVALRVLRRELRREEIAGGGERASDELLVELLDDPSRAATLPPRLRRAC 553

Query: 486 KYIHELIHIAQFC------SPHDFFTLILGAKKGRQQFISRF------GNEVIDVLDE-- 531
             +   +            S       +  A      +  R              LD   
Sbjct: 554 ARLARTLARGAAAAAEPGASVETLLWALWDASGLASDWRERALGSGPTAERADADLDAVI 613

Query: 532 -FLNFTLRN-EQNSYSSLQELISELEQY--PPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
                  +  ++   +   + ++ LE          A       V ++T   A G E  V
Sbjct: 614 ALFRAAEQFADRTPGARAPDFLTYLETQEFASDTLAARGRRAESVPVLTASAAAGQEWDV 673

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V +      V+    ++   +      +           +  +  S      +++   + 
Sbjct: 674 VVVAGVQEDVWPDLRLRDSLLGAQAVAE---------VAAGRDAASAGPAQARRAVLHDE 724

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI--- 704
            R+    ++RA  +L++    +         R           ++   + +++  ++   
Sbjct: 725 LRMFVSALSRARRRLLLTAVQDGETRPSEFLRLASAGPAPRADDEPDHRLVRVPPALDLR 784

Query: 705 --------NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                         A +        +    E           +            ++   
Sbjct: 785 GLVGVLRAETLRGRAADPWAVRLLASLAAAEVPFAHPDAWAGLAPTSTPQQLWADDDVVP 844

Query: 757 LNPSTIDTKGKTNLESLLSDNQTF-------NRGLIIHKLLQVIFTL-PEHKRKNFITSY 808
           ++PS+++      L  LL+              G ++H++   +               +
Sbjct: 845 VSPSSLEYLQACALRWLLTTAGGRSGSALPQEVGTLVHEIAADLPHGGAAELLAELDRRW 904

Query: 809 CTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGR 867
                    A          + RLL +              V V   ++       I GR
Sbjct: 905 PALGLPEGWAARRTRAGAEEMVRLLAD------YLAGVPGHVDVEVPVDVVVDRARIRGR 958

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           +D++  +Q  + I + KT        E     H  QL
Sbjct: 959 VDRVEHTQDGVRIADLKTGATAVTAQEA---EHHPQL 992


>gi|256372350|ref|YP_003110174.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008934|gb|ACU54501.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 989

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 101/742 (13%), Positives = 218/742 (29%), Gaps = 81/742 (10%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
               + +  + +   +            +   ++ S    +       Q    A+     
Sbjct: 161 AALSVPMEPARDDHVRRARAFWRDVALRLGTALAASNAATDAQRRFLTQAQLLANAIDAW 220

Query: 63  EERFSLLSSFFLTQK---FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
            +     +S  +          +     ++     +L+E L      +  +        +
Sbjct: 221 LDSPHTDASGLVADARSIGLRSRGAGIDQVRSVIQELREALDDPARRWQALGWTRADELV 280

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                   T+A  +    +E +++     F  +      +L+        R ++    + 
Sbjct: 281 TVRQPQLATIAASVIRAGDERRRRVGEASFSAIERAALAVLEDSTA----RAELSDRWHA 336

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +++DE QD S  Q  ++  LT                  VGD KQ+IY+F GA P+    
Sbjct: 337 LIVDEFQDVSENQLRLVELLTSVVQGRAA---------VVGDPKQAIYAFRGARPELATS 387

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                           ++IEL  SFRS   I+ + +        A           R   
Sbjct: 388 FAER-----------SAVIELEQSFRSLPRIIDLANDYAQRALGASE----RLRPTRSAP 432

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
           S  G +  VQ+      +          +                        I   I  
Sbjct: 433 SSDGSIAVVQVVGGRAVERRRGAARAVAAR-----------------------IKRDITD 469

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T         ++A+DI V+ R+  D        R       ++ + +    L D     
Sbjct: 470 GT---------LRARDIAVVARRWADLDDY----RRELGSVGVAAIASGGGSLLDTNVGL 516

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            + ++ R++    DD + + + ++ +  F +D++     +R  T     +++   +    
Sbjct: 517 LVSSILRWLADPSDDAAAIAVARADVIGFRDDELVAYAHERDLTRPWSTFLEALDDPRS- 575

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLR 538
                 + +  L    +  S            +           E  +  L   +    R
Sbjct: 576 ------RRLRTLRDNTRGASASCAIVAACELLEIDDALAEGPDPERTLADLHAMVGLIAR 629

Query: 539 NEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                S   +  L+  L     ++ R   A  + + + TVH AKGLE P+V  V   +  
Sbjct: 630 LATGRSLGEVVALLERLRTTGVSLPRPPVAGADAITLTTVHGAKGLEWPMVVAVGLEADP 689

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   +     L+   G+       ++ ++   ++  HL    ++E  RL YV +TR
Sbjct: 690 HP-----ALPEGLVLHPTLGVAWRDRDEQNPSSRALEIGAHLAHEREQEQRRLTYVALTR 744

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A D +++    +  +  + +        + +                     +       
Sbjct: 745 ARDTVLVVLDGDADSALRESLHAVGTNEWTTIDVLADEPDRDGAADGADAVPMPSSPPPD 804

Query: 718 HPENTPLEREETIKQLMDEQKI 739
              +   E           + I
Sbjct: 805 SGASEADEPAPVPPPTAPPRSI 826


>gi|172040186|ref|YP_001799900.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
 gi|171851490|emb|CAQ04466.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
          Length = 716

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/635 (13%), Positives = 166/635 (26%), Gaps = 152/635 (23%)

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           I  +   +    ++DE QD + +Q  ++ +   +             L  VGD  Q+IYS
Sbjct: 207 IAEEFRSQYRTFVVDEYQDVTPLQQRLLDAWLGE----------RDDLTVVGDANQTIYS 256

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F+GA P  +L               + + + L   +RST  ++ + ++V    +      
Sbjct: 257 FNGASPSYLLDFTTKFP--------EATTVRLHRDYRSTPQVVELANEVIGKAKGR---- 304

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
             + T ++    R                                    +       A+ 
Sbjct: 305 -AAGTRLKLEGQRPDGPEP---------------------------EFVEYPDEVAEAKG 336

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  I+ +I             +Q  +I VL R       + +          I      
Sbjct: 337 VAEKIAQLIKQG----------VQPAEIAVLYRINAQAGALEYALEE----AGIPYQVKG 382

Query: 409 RFILTDHLAIKD-LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                    I+  L +L +   +     +      +       +   +I         + 
Sbjct: 383 GEGFFSRAEIRQGLGSLAKSARNFGGQPAGEPGSAAGAEGTGPETREEILNAAK--AALA 440

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
                 A    ++ +   + ++ L          +    IL A                 
Sbjct: 441 PVGLTAAEPSGAQERQRWQSLNAL---------VELIEEILTANPQISYLG--------- 482

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           V+                                   +      V +++VH AKGLE   
Sbjct: 483 VIGMLQERVRS-------------------------KNPPKVQGVTLVSVHMAKGLEWDA 517

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFLV     +F                                I   L         EE 
Sbjct: 518 VFLVGLYEGMFP-------------------------------IHHALKGAGAADAIEEE 546

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RLLYVG+TRA + L +          K +       V   F +D    + +    +  D
Sbjct: 547 RRLLYVGVTRAREHLHLSWALARQEGGKQS------RVRTRFLDDLVPWEDEDDGELAID 600

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
              A                 T     + + + +     ++ D      L    ++T   
Sbjct: 601 LDQARRRRKTGAPKNACAVCGTPLSTPEAKILGRCGQHSLETDQVVIGELREWRLETAKS 660

Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
             + + +          ++  + Q +   P    +
Sbjct: 661 MGVPAYVVFTDA----TLL-AIAQRMPASPAELIQ 690


>gi|196047643|ref|ZP_03114849.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           03BB108]
 gi|196021512|gb|EDX60213.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus
           03BB108]
          Length = 409

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 138/470 (29%), Gaps = 93/470 (19%)

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +F  GD+ Q+IY + GA  + +L   +             +II L  ++RS   I+ + +
Sbjct: 1   MFIAGDDDQAIYGWRGASHQIILSFPKEFDN--------TTIIALNTNYRSNPFIVGLGN 52

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           +V  + +        S      +        T+                           
Sbjct: 53  EVIKLNQERFDKELYSVREEGVQPFYARPATTLD-------------------------- 86

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                     A +I   I   + +              KD  +L R    +     L   
Sbjct: 87  ---------EANQILQLIQEKVDSGER---------NYKDFCLLYRTHSVSR---SLLDQ 125

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN----FSED 451
           L       +         +H  IK ++   R ++      S   +L +         S  
Sbjct: 126 LTIHKIPFIKHGASQSFYEHSLIKPVLDHLRLVIEPFRLESLSNILPTMYIGRDDCISFI 185

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
           +  +         ++  ++    +    + + V + I + I   +   P      I+  K
Sbjct: 186 EREQWKYGEGRFPSLLHFLLLNPSLKPFQVKKVNERI-DFIKFIKELEPKKALKEIIHGK 244

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS----- 566
               +++         +  +     L     S +   ++ + L+     I+         
Sbjct: 245 GKYLEYLQSNDRSSFTMHKDIQEEMLEELMESANRFTDIPAYLQFIDEAIQGQKEMEALK 304

Query: 567 --ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                + V +M++H AKGLE P VFL+     +  H    K                   
Sbjct: 305 TMPQKDAVSLMSIHNAKGLEFPCVFLLGASDGILPHTSSLKD------------------ 346

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                   ++          EE  RLLYV +TRA ++L I        +K
Sbjct: 347 --------ANDRVTETSEALEEERRLLYVAITRAKEELYISSPQFFRGKK 388


>gi|311063850|ref|YP_003970575.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
 gi|310866169|gb|ADP35538.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 1400

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 100/850 (11%), Positives = 228/850 (26%), Gaps = 104/850 (12%)

Query: 31  INKYVSLSMETGNPT-ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEI 89
           ++  +  +M  G+ T + +    ++   Q      +  +           P+    T+  
Sbjct: 160 LSHAIGNAMIGGSTTTMDEAIGRVRAWDQAFL--AQLDIAIGDTPVPDEEPKAKAPTKNK 217

Query: 90  NKKSPDLKEKLKKSQDEFIK--IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
                    K ++ + +     +        + +     LTL       YE  K+   + 
Sbjct: 218 KDTEETFAAKQEEYRAQLRDICVYKCAQLRDVTRRRETLLTLV----EEYEREKRVQNMA 273

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           +F D  I    L+ +      I  +  +   H+L+DE QDTS  Q  ++ +L        
Sbjct: 274 EFSDFTIAAYQLVARFPS---IGERYRRRYTHVLLDEYQDTSTTQAMLLATLFHPQSADA 330

Query: 208 NTHSSPRT----------------------LFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           +   S                         + AVGD  QSIY++ GA P      ++   
Sbjct: 331 DADRSSSRWREAARSAGGWSKDGVGLSRSAVNAVGDPFQSIYAWRGASPGAFRMFQKDF- 389

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                         L ++ R+T  +L   + +              T  +R    R G  
Sbjct: 390 ----GMPADAKPYPLSVTRRNTCIVLRAANNL--------------TEPLRIPPRRAGSS 431

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              ++    +S  D+                     A  +AR     I+         ++
Sbjct: 432 LMREVDVANLSAMDNAAEGTIGVLG----FATFGQEADAVARFAKQAIARYRKDAATAAS 487

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                     + VL R +                  ++ +      L +   ++DL+AL 
Sbjct: 488 DTPH------VAVLFRGKTHMAQFAQELE----RAGLTTLVVGYSALLERPEVQDLIALL 537

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
                  D  S + +L +P F    + + ++     + +    Y     +  I       
Sbjct: 538 HAAADHTDSASLMRLLATPRFGLGSESLTRLAGMAEDLDNQCRYRALVESGIIGSGSDGA 597

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN-------FTLR 538
           +            S     + ++    G     +    +V  ++ ++ +           
Sbjct: 598 RADDGHDEAIVSTSID---SGLVSEADGGSDIATFADPQVKAIVKQYRDRVPHAVFLIDM 654

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH----------TAKGLESPVV 588
             ++   SL       ++               V  +T H           A  L+   +
Sbjct: 655 MMRDDLPSLLSRRGGFDETTSRRIIQAGEVLQRVHAVTNHPLKEVIDAAVRALNLDIDTI 714

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                 +        +    + S+                  +   +         EE  
Sbjct: 715 VAQAVKNPSQPVNPTQARSPLQSVAALVDTYTQEIVEGVNPTLRGFMSWVDSLGQIEEGT 774

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK-KIKLTNSINKD 707
               V  T A   L+    +           +    V+ S      V+   +       +
Sbjct: 775 --AAVPDTPADVVLMTIHQAKGLEWDAVAVVSMQSGVFPSNQGGLHVELDAEHPGGGAGE 832

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
            W   E+                   +D   +P+       +D     +     ++    
Sbjct: 833 SWTPPEYKATVRSWADDPAAVPAPVRVDAGILPRFPHDANPDDAPVETLRALDDVEVIDD 892

Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
                   D ++ + G            +      ++  +   +  +   A E +   ++
Sbjct: 893 ----EFYGDLRSKDIG----------DDMDVADPSSWYLTQEEEYGRRLLADERRLAYVA 938

Query: 828 ITRLLENPMM 837
           +TR  ++ ++
Sbjct: 939 LTRAKKDALL 948



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 91/360 (25%), Gaps = 71/360 (19%)

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
              Q        T  E+   +  W   + +           KL+              +  
Sbjct: 1040 RPQGFFVGDHATEYERDVVEEAWNAPLEEREQGGGPTWPAKLSEETLSKLTGGMSGDSVL 1099

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
              + P       + L+++  +    F   + +I+         +   G+ N+ +L +   
Sbjct: 1100 VTDDPDSLLARARMLVEDPDLMPWSFGRGEREIDRYVRRQAEHLLEHGRQNVTALQARAG 1159

Query: 779  ------------------------TFNRGLIIHKLLQVIFTL------------------ 796
                                        G + H   +                       
Sbjct: 1160 HMTQREERGYWRGLIRPIPRVASPAAEAGTLFHAWAEQFINAYGDGQSIDADGIGAYDSS 1219

Query: 797  -----------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
                           R++ +        K       +  L    R L     +      +
Sbjct: 1220 SIETGTAGTCREPVTRESLLHDLSELEMKSDTLTAKERQLTVWQRRLAESTWSE--RRPA 1277

Query: 846  YSEVSVSGKINCPKKDIIISGRIDQISISQ-------QNIFIFEYKTHHHVPQEIEHIPY 898
            ++E  +   I     D+I++G++D +           +   I ++KT     +  +    
Sbjct: 1278 WAERQIVVSIP-QLGDVIVNGKLDAVFHGGLDANDPTKQYTIVDWKTGRKPRKPQD--IE 1334

Query: 899  THIAQLSIYEKILKDS--YPNKSLVCLLIYV----SEPKVFIIPQNKLNKAFAEISTKIP 952
              + QL  Y  +L      P   +   L Y+       +          +  AE+S+ IP
Sbjct: 1335 HKLVQLDWYRLLLSYIEHVPLDRIDATLYYLSEPDEGARELHARAKTEQEILAELSSGIP 1394


>gi|328676858|gb|AEB27728.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family [Francisella cf.
           novicida Fx1]
          Length = 688

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/594 (14%), Positives = 172/594 (28%), Gaps = 126/594 (21%)

Query: 98  EKLKKSQDEFIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           E+++  ++    ++   +    K+ +       L   + + + +  K    + ++D+I  
Sbjct: 136 ERIETFKNYISLLKSDLSLDNSKLKELNSKEKKLLDKIFSQFNQECKNQKAITYDDMIYL 195

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              L +K         ++    +HI+IDE QD + +Q  ++R L                
Sbjct: 196 PAKLFEKD---KNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVG----------RNTY 242

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           + AVGD  Q+IY + G+ P  +L   K+          +      L  +FR    I  + 
Sbjct: 243 VMAVGDVDQTIYQWRGSTPYYMLEGFKKDF--------KGVQQYTLSYTFRYGDLISLMA 294

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +    +        +   +                                       
Sbjct: 295 NNIIVNNKKRHNNLCITYPKLNK------------------------------------- 317

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
               + S    + ++   +  +I             + A DI +LVRK   T +      
Sbjct: 318 --ATDISILDSSDKVVLKLKALIQNG----------VDASDIAILVRKYNSTTVFELS-- 363

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF---------VCMLKSPL 445
                + ++        +      K +                           ML  P 
Sbjct: 364 --CLYHDLAYSVVADKNIFSENLFKAIYGYLMLFNKGYGFDKHTLEQRVEFIKAMLDYPS 421

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF---QHVIKYIHELIHIAQFCSP-- 500
               +D   K+ +Q     +            + K    ++++   +   +I        
Sbjct: 422 LYLKKDLKQKLASQIASDISQAANCIAALRETVDKAFKQKNILAISNSWRNIFNNVRIKK 481

Query: 501 -HDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
                  IL +    +Q     G         + +   +   +   ++L E I  L Q  
Sbjct: 482 ADKAIDFILQSLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIEFIELLYQLY 541

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
               + + +N N+++IM++H AKGLE   V + D     F      K+            
Sbjct: 542 TRSNQQNQSNPNQIQIMSMHRAKGLEWDYVVVHDATEGGFFGDKNTKV------------ 589

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                     EE  RL YV +TR    L I    + + 
Sbjct: 590 ---------------------DDEIIEEERRLFYVAITRVKKHLFIVSSDDITR 622


>gi|254372735|ref|ZP_04988224.1| hypothetical protein FTCG_00303 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570462|gb|EDN36116.1| hypothetical protein FTCG_00303 [Francisella novicida GA99-3549]
          Length = 688

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/594 (14%), Positives = 172/594 (28%), Gaps = 126/594 (21%)

Query: 98  EKLKKSQDEFIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           E+++  ++    ++   +    K+ +       L   + + + +  K    + ++D+I  
Sbjct: 136 ERIETFKNYISLLKSDLSLDNSKLKELNSKEKKLLDKIFSQFNQECKNQKAITYDDMIYL 195

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              L +K         ++    +HI+IDE QD + +Q  ++R L                
Sbjct: 196 PAKLFEKD---KNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVG----------RNTY 242

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           + AVGD  Q+IY + G+ P  +L   K+          +      L  +FR    I  + 
Sbjct: 243 VMAVGDVDQTIYQWRGSTPYYMLEGFKKDF--------KGVQQYTLSYTFRYGDLISLMA 294

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +    +        +   +                                       
Sbjct: 295 NNIIVNNKKRHNNLCITYPKLNK------------------------------------- 317

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
               + S    + ++   +  +I             + A DI +LVRK   T +      
Sbjct: 318 --ATDISILDSSDKVVLKLKALIQNG----------VDASDIAILVRKYNSTTVFELS-- 363

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF---------VCMLKSPL 445
                + ++        +      K +                           ML  P 
Sbjct: 364 --CLYHDLAYSVVADKNIFSENLFKAIYGYLMLFNKGYGFDKHTLEQRVEFIKAMLDYPS 421

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF---QHVIKYIHELIHIAQFCSP-- 500
               +D   K+ +Q     +            + K    ++++   +   +I        
Sbjct: 422 LYLKKDLKQKLASQIASDISQAANCIAALRETVDKAFKQKNILAISNSWRNIFNNVRIKK 481

Query: 501 -HDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
                  IL +    +Q     G         + +   +   +   ++L E I  L Q  
Sbjct: 482 ADKAIDFILQSLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIEFIELLYQLY 541

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
               + + +N N+++IM++H AKGLE   V + D     F      K+            
Sbjct: 542 TRSNQQNQSNPNQIQIMSMHRAKGLEWDYVVVHDATEGGFFGDKNTKV------------ 589

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                     EE  RL YV +TR    L I    + + 
Sbjct: 590 ---------------------DDEIIEEERRLFYVAITRVKKHLFIVSSDDITR 622


>gi|118497371|ref|YP_898421.1| DNA/RNA helicase superfamily I protein [Francisella tularensis
           subsp. novicida U112]
 gi|195536061|ref|ZP_03079068.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208779165|ref|ZP_03246511.1| UvrD/REP helicase family protein [Francisella novicida FTG]
 gi|118423277|gb|ABK89667.1| DNA and RNA helicases Superfamily I protein [Francisella novicida
           U112]
 gi|194372538|gb|EDX27249.1| UvrD/REP helicase family protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208744965|gb|EDZ91263.1| UvrD/REP helicase family protein [Francisella novicida FTG]
          Length = 688

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/594 (14%), Positives = 172/594 (28%), Gaps = 126/594 (21%)

Query: 98  EKLKKSQDEFIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           E+++  ++    ++   +    K+ +       L   + + + +  K    + ++D+I  
Sbjct: 136 ERIETFKNYISLLKSDLSLDNSKLKELNSKEKKLLDKIFSQFNQECKNQKAITYDDMIYL 195

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              L +K         ++    +HI+IDE QD + +Q  ++R L                
Sbjct: 196 PAKLFEKD---KNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVG----------RNTY 242

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           + AVGD  Q+IY + G+ P  +L   K+          +      L  +FR    I  + 
Sbjct: 243 VMAVGDVDQTIYQWRGSTPYYMLEGFKKDF--------KGVQQYTLSYTFRYGDLISLMA 294

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +    +        +   +                                       
Sbjct: 295 NNIIVNNKKRHNNLCITYPKLNK------------------------------------- 317

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
               + S    + ++   +  +I             + A DI +LVRK   T +      
Sbjct: 318 --ATDISILDSSDKVVLKLKALIQNG----------VDASDIAILVRKYNSTTVFELS-- 363

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF---------VCMLKSPL 445
                + ++        +      K +                           ML  P 
Sbjct: 364 --CLYHDLAYSVVADKNIFSENLFKAIYGYLMLFNKGYGFDKHTLEQRVEFIKAMLDYPS 421

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF---QHVIKYIHELIHIAQFCSP-- 500
               +D   K+ +Q     +            + K    ++++   +   +I        
Sbjct: 422 LYLKKDLKQKLASQIASDISQAANCIAALRETVDKAFKQKNILAISNSWRNIFNNVRIKK 481

Query: 501 -HDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
                  IL +    +Q     G         + +   +   +   ++L E I  L Q  
Sbjct: 482 ADKAIDFILQSLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIEFIELLYQLY 541

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
               + + +N N+++IM++H AKGLE   V + D     F      K+            
Sbjct: 542 TRSNQQNQSNPNQIQIMSMHRAKGLEWDYVVVHDATEGGFFGDKNTKV------------ 589

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                     EE  RL YV +TR    L I    + + 
Sbjct: 590 ---------------------DDEIIEEERRLFYVAITRVKKHLFIVSSDDITR 622


>gi|227550043|ref|ZP_03980092.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227077889|gb|EEI15852.1| helicase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 1018

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 118/920 (12%), Positives = 251/920 (27%), Gaps = 143/920 (15%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQD 105
            +    ++  S  +       LL       + T  + +     +   +  L++ L ++ +
Sbjct: 114 QRAGGDIRLISGAEQDAAIRQLLQGHAEDGRGTWPEQLRPALPMVGFARQLRDFLLRAVE 173

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
             +      N  K+        + A      Y++             +     +     V
Sbjct: 174 RQLTPDALRNLGKVH--NRPIWSAAGDFLDEYQQVMA----------LNPARFVSASELV 221

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
           S+ +R +I+Q  + +++D+ Q  +    E++R L E   +G             GD  QS
Sbjct: 222 SSVLRGEIEQRWHTVVVDDAQHLAPAAGELVRRLVERASLG----------VVGGDLGQS 271

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           ++ F GA P+                G    +I+L  S R  A I      V        
Sbjct: 272 VFRFRGASPRFFANLA----------GLPHEVIDLGESRR--APIAQAA--VCDSAAAQN 317

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            L  D+      R+   G V   ++   V S    +   +          +         
Sbjct: 318 SLVADTVR----RAHLEGGVAYREMAVIVRSASSIESVRRALLHAGVPVMVNPTDVVLSE 373

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAK-----DILVLVRKRKDTPLITFLTRFLKNDY 400
            R +A  I  +   +   S+ + R +        D + L R  +         R      
Sbjct: 374 QRIVAALILGLRALEGELSSAEWRELLLGPVGGTDPVTLRRLLRGLRRWEPGERAEDT-- 431

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
                               L  L R      D      +L     +        +   R
Sbjct: 432 --------------------LRHLLRSTQPLPDFGV---VLTERELSILNHVREVLDAGR 468

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            E          +A    +   + +  I  L   A           ++        ++ R
Sbjct: 469 AELAHGSIEDVLWAVWNATGLANHL-LIAALRGGATGSQADRDLDSVMALFDAAGDYVER 527

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY--PPTIKRAHSANHNEVRIMTVH 578
                               +   S +   ++ + +   P  ++   +A  + V ++T H
Sbjct: 528 --------------------RVGGSDVAGFVAHISEQVLPTGVRDRRTATPDAVAVLTAH 567

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            A   E   V +       +                D             N++   +   
Sbjct: 568 GAVRCEFHTVIVAGVQEMQWPSLAETGTMFGQEELVDL----------VDNDVDPAVPVS 617

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--------------TWYDM 684
            K     E  RL  V ++RA+ ++++        E+                        
Sbjct: 618 RKAERLAEEKRLFDVAVSRATHRVLVTAVDEPDGEEVIQPSRFVEDFCTTHDIAPACVTT 677

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWST-----------HHPENTPLEREETIKQL 733
              S       +++     + +D+ IA                           +     
Sbjct: 678 ASTSASPAAGAEEVTAVRVLARDDVIAELRRALNDSGIGEAGRRQAARQLARLADAGVPG 737

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN------RGLIIH 787
            D ++      +     +  P  L+PS I++     +  +L      +       G + H
Sbjct: 738 ADPEEWWTTTEAASHEALAVPERLSPSRIESLLACPMREVLQRMVGLDSSLHMVWGSMAH 797

Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
              + +    +            ++    P  + +  +     +L+        +  S  
Sbjct: 798 AYFEAVGRGVDETFARNAVLEARRSVDDAPQWKVEREIAEFEAMLQRAH-RWLQTSRSAF 856

Query: 848 E-VSVSGKINCPK-KDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           E V+V   I+      + + GR D+I       + I + KT   VP + +        QL
Sbjct: 857 EQVAVEADIDVEISPGLRVVGRADRIERDGSGALHIVDLKTGSGVPSKDDAEAN---PQL 913

Query: 905 SIYEKILKD-SYPNKSLVCL 923
             Y+  L   +   +++   
Sbjct: 914 EAYQLALSRGAIDGETVRSA 933


>gi|254776586|ref|ZP_05218102.1| helicase, UvrD/Rep family protein [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 655

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/616 (12%), Positives = 172/616 (27%), Gaps = 88/616 (14%)

Query: 401 KISV-VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
            + V        L +  A++ L+ +        D    + +L  P+       + ++   
Sbjct: 14  GVPVTAPAASGPLAEQPAVRALLTVLLATADGLDGQRALALLTGPIGRVDPVSLRQLRRN 73

Query: 460 RHET----------ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS----PHDFFT 505
                         E + E +   A    + F+ + +    L            P     
Sbjct: 74  LQRANAGRPPGDFAELLVEALTGTAPPPGAPFRALRRVRAVLDAAGCCHRDGQDPRYILW 133

Query: 506 LILGAKKGRQQFIS------RFGNEVIDVLD---EFLNFTLRN-EQNSYSSLQELISELE 555
                   +++++S          +    LD      + T     + S +SL+ L+  + 
Sbjct: 134 AAWHQSGLQRRWLSVSERGGPAAAQAGRDLDSVTALFDITDDYVSRTSGASLRGLVEHVA 193

Query: 556 QYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                       A   +V +++ H A G E   V +      ++ +   +   +      
Sbjct: 194 ALQLPGAGPESVATAEQVSVLSAHAALGREWDFVVIAGLQDGLWPNTVPRGGVLGTQRLL 253

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH----SNT 670
           D    +                  ++     E  RLL   M RA  +L++         +
Sbjct: 254 DVLDGV-------------SADASVRAPLLAEERRLLVAAMGRARRRLLVTAVDSDTDGS 300

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS-----------------INKDEWIAYE 713
             E        Y++   +  + E      ++                            E
Sbjct: 301 DREAALPSPFCYEIAQWAGEDAEPAALQPVSAPRVLSAAALVGRLRGVVCAPDGAVDELE 360

Query: 714 WSTHHPENTPLEREETI-KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                 +   L +             +     +       +   L PST+ T     L  
Sbjct: 361 RRCAATQLARLAQAGVPGADPASWHGLIPVSTAEPLRGGGDVVTLTPSTMQTLTDCPLRW 420

Query: 773 LLSDNQTF-------NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
           L   +            G ++H L+      P         ++  ++          N L
Sbjct: 421 LAERHGGTDPRDLRSAIGSVVHALIAQPHRSPAELVAELDRAW--RHLPFAAQWHSDNEL 478

Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKIN-----CPKKDIIISGRIDQISIS-QQNIF 879
                +LE      A +  + +EV V  +I+        +++ + GR+D++       + 
Sbjct: 479 ARHRAMLEAFAQWRANTRGALTEVGVEVEIDGTLSTGDGREVRLRGRVDRVERDAAGRLV 538

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN------KSLVCLLIY---VSEP 930
           I + KT      + +       AQL++Y+  +            +     L+Y    +  
Sbjct: 539 IVDVKTGKTPVSKDDAQQ---HAQLALYQLAVAHGLLGAAGGDAEPGGARLVYVGKTAAS 595

Query: 931 KVFIIPQNKLNKAFAE 946
            V    Q+ L  A A+
Sbjct: 596 GVVEREQDPLTAAAAD 611


>gi|330977541|gb|EGH77486.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 681

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/691 (11%), Positives = 181/691 (26%), Gaps = 124/691 (17%)

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               +  +   R ++  DI +LVR  K+   +             SV  +D+  +     
Sbjct: 9   SAGFVTPDNTLRGLRPADIAILVRDGKEAQAVRQQLTA---RGVRSVYLSDKDSVFAAQE 65

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
             D+++  +     + + +    L     +    ++ ++           E   +     
Sbjct: 66  AHDMLSWLKACAEPDSERTLRAALACITLDLPLAELERLNQD--------ELAWERRVMQ 117

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
              ++ + +    L  + +          ++    G +   +         L E L    
Sbjct: 118 FRGYRAIWRSQGVLPMLRRLLHDFALPQTLMTRNDGERVLTNLL------HLSELLQQAA 171

Query: 538 RNEQNSYSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                  + ++ L   L               ++   V+++T+H +KGL+ P+VFL    
Sbjct: 172 AELDGEQALIRHLGDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFIC 231

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
           S          +    +            +S+        LI+        E  RLLYV 
Sbjct: 232 SSKPVDGSRLPLQFHDADG----------KSQISLQPTEALIQQADDERLAEDLRLLYVA 281

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +TR+     +   ++      +        +         + +    N    D    +E 
Sbjct: 282 LTRSEHACWL-GVADLKRGNANTSMLHRSALGYLLGGGAVLAESADLNVWLHDLAQGWEA 340

Query: 715 STHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN--------DINEPYIL 757
               P   P +   +  +             +       +               +    
Sbjct: 341 IALQPVPEPTDERFSAPRNEAALVKLLVPKRRAAENWWIASYSALRIGDTVTAGADESPD 400

Query: 758 NPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKLLQV-------IFTLPE 798
           +P          L+                  +  N G  +H LL+        +     
Sbjct: 401 SPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFVMTAHAP 460

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------MMTTAMSCDSYS-EVS 850
            K ++ +   C +           + L  +  + L          +      + Y  E+ 
Sbjct: 461 EKLQDAVARRCNRRGWAGWINTLSDWLQHMLNMPLRLSPDAAPVALGELDQPNQYRVEME 520

Query: 851 V---SGKINCPKKDIIIS----------------------GRIDQISISQQNIFIFEYKT 885
               S  +N  + D ++                       G ID     +   ++ +YK+
Sbjct: 521 FWFASNNVNVAQMDTLVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHEGRYYVADYKS 580

Query: 886 HHHVPQEIEH---------IPYTHIAQLSIYEKILKDS---------YPNKSLVCLLIYV 927
           +     E  +         +   +  Q  +Y   L            Y       L +++
Sbjct: 581 NWLGSDESAYTQLAMETAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQHMGGALYLFL 640

Query: 928 SE------PKVFIIPQNKLNKAFAEISTKIP 952
                      F  P  +L ++   +    P
Sbjct: 641 RGSRSASQGAYFTRPPRELIESLDLLFQGKP 671


>gi|294621039|ref|ZP_06700231.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317]
 gi|291599353|gb|EFF30378.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317]
          Length = 406

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 114/377 (30%), Gaps = 56/377 (14%)

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D  +L R    + ++            I           D   IKD++A    +++ 
Sbjct: 11  NYGDFAILYRTNAQSRVMEETL----LKANIPYKMVGGHKFYDRKEIKDILAYLNVLVNP 66

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYIQKFANCGI-----SKFQHVI 485
           +D +SF  ++ SP        I K+ +     E  + E  Q      I      +     
Sbjct: 67  QDSISFERIVNSPKRGIGPGSIEKLRSFASLHEWPLLEAAQNVDLANIGGKAGQQLGAFG 126

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT----LR 538
           + I E+  +  + +  +    +L      +    +   E     + L+EFL  T     +
Sbjct: 127 EMIQEVTQMIPYLTVTELTKEVLDRSGYLEDLKIQNTLEAQARIENLEEFLTVTQEFDKQ 186

Query: 539 NEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            EQ +         +L     +    +       + ++V +MT+H AKGLE PVVFL+  
Sbjct: 187 FEQQNEEDADAPEEKLTVFLNDLALVSDIDNLEEDASQVTLMTLHAAKGLEFPVVFLIGL 246

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              VF                                                     YV
Sbjct: 247 EEGVFPLSRALMEESELEEERRL----------------------------------AYV 272

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           G+TRA + L +    + +   ++        V +       ++ ++ T            
Sbjct: 273 GITRAEEALYLTNAFSRTLYGRTQYNRPSRFVEEIDQELLEIEGMRPTPKKTPVFAKKTA 332

Query: 714 WSTHHPENTPLEREETI 730
           +S   PE   +  +   
Sbjct: 333 YSYKQPETAVVPSKSAT 349


>gi|289555475|ref|ZP_06444685.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
 gi|289440107|gb|EFD22600.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605]
          Length = 656

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/561 (13%), Positives = 162/561 (28%), Gaps = 91/561 (16%)

Query: 438 VCMLKSPLFNFSEDDIFKICT----------QRHETETVYEYIQKFANCGIS---KFQHV 484
             +L  P+       + ++             R   + + E +   A          + V
Sbjct: 50  CSLLTGPIGGVDPVSLRQLRRTLQRARPGQTSRKFGDLLVEVLGGDAPPSGPGSRALRRV 109

Query: 485 IKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGN------EVIDVLD--- 530
              +       +  S     P             ++++++   +      +    L+   
Sbjct: 110 RAVLTAAARCHRSGSLGGQDPRHTLWAAWQRSGLQRRWLAASEHGGAAAVQATRDLETVT 169

Query: 531 EFLNFTLRN-EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVV 588
              + T     + S +SL+ L+  +       ++   +A   +V +++ H A G E  +V
Sbjct: 170 ALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLV 229

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +      ++ +   +   +      D    +    S              +     E  
Sbjct: 230 VIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASM-------------RAPLLAEER 276

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKK----SNQRTWYDMVYDSFHNDERVKKIKLTNS- 703
           RLL   M RA  +L++    + +             ++++   +  + E V    ++   
Sbjct: 277 RLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPR 336

Query: 704 -------------INKDEWIAYEWSTHHPENTPLEREETI----KQLMDEQKIPKKLFSP 746
                        +      A + +      T L R            +   +     S 
Sbjct: 337 VLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSD 396

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF-------NRGLIIHKLLQVIFTLPEH 799
              D ++   L PST+       L  L   +            G ++H L          
Sbjct: 397 PLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQ 456

Query: 800 KRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
                   +      A+ + A E       I   ++      A S    +EV V   I+ 
Sbjct: 457 LLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQ----WRAQSRSELTEVGVEVDIDG 512

Query: 858 PKKD-------IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
             +D       I + GR D++       + I + KT      + +       AQL++Y+ 
Sbjct: 513 ALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQ---HAQLAMYQL 569

Query: 910 ILKD---SYPNKSLVCLLIYV 927
            + +      ++     L+YV
Sbjct: 570 AVAEGLVRAGDEPGGARLVYV 590


>gi|254374192|ref|ZP_04989674.1| hypothetical protein FTDG_00355 [Francisella novicida GA99-3548]
 gi|151571912|gb|EDN37566.1| hypothetical protein FTDG_00355 [Francisella novicida GA99-3548]
          Length = 688

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/594 (14%), Positives = 172/594 (28%), Gaps = 126/594 (21%)

Query: 98  EKLKKSQDEFIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           E+++  ++    ++   +    K+ +       L   + + + +  K    + ++D+I  
Sbjct: 136 ERIETFKNYISLLKSDLSLDNSKLKELNSKEKKLLDKIFSQFNQECKNQKAITYDDMIYL 195

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              L +K         ++    +HI+IDE QD + +Q  ++R L                
Sbjct: 196 PAKLFEKD---KNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVG----------RTTY 242

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           + AVGD  Q+IY + G+ P  +L   K+          +      L  +FR    I  + 
Sbjct: 243 VMAVGDVDQTIYQWRGSTPYYMLEGFKKDF--------KGVQQYTLSYTFRYGDLISLMA 294

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +    +        +   +                                       
Sbjct: 295 NNIIVNNKKRHNNLCITYPKLNK------------------------------------- 317

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
               + S    + ++   +  +I             + A DI +LVRK   T +      
Sbjct: 318 --ATDISILDSSDKVVLKLKALIQNG----------VDASDIAILVRKYNSTTVFELS-- 363

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF---------VCMLKSPL 445
                + ++        +      K +                           ML  P 
Sbjct: 364 --CLYHDLAYSVVADKNIFSENLFKAIYGYLMLFNKGYGFDKHTLEQRVEFIKAMLDYPS 421

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF---QHVIKYIHELIHIAQFCSP-- 500
               +D   K+ +Q     +            + K    ++++   +   +I        
Sbjct: 422 LYLKKDLKQKLASQIASDISQAANCIAALRETVDKAFKQKNILAISNSWRNIFNNVRIKK 481

Query: 501 -HDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
                  IL +    +Q     G         + +   +   +   ++L E I  L Q  
Sbjct: 482 ADKAIDFILQSLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIEFIELLYQLY 541

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
               + + +N N+++IM++H AKGLE   V + D     F      K+            
Sbjct: 542 TRSNQQNQSNPNQIQIMSMHRAKGLEWDYVVVHDATEGGFFGDKNTKV------------ 589

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                     EE  RL YV +TR    L I    + + 
Sbjct: 590 ---------------------DDEIIEEERRLFYVAITRVKKHLFIVSSDDITR 622


>gi|296392993|ref|YP_003657877.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296180140|gb|ADG97046.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 1025

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 105/962 (10%), Positives = 237/962 (24%), Gaps = 125/962 (12%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           + + +   +          +     L   T +       +   +AS         +    
Sbjct: 66  AADRLRAQIHGRLLRASPQLALAKPLVRTTHSYAF-ALLEARARASGNPPPRLIPAAEQD 124

Query: 72  FFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKIR--DRFNTYKMFKSTLASL 127
             L +    Q     + +       +   +L+       +                    
Sbjct: 125 ATLRELAIDQAARWPEPLRAALGSMEFTAQLRSVFQRAAQHGHGPEGLIALGTARARPEW 184

Query: 128 TLAKYLNAHYEEAKKKN------------CVLDFEDLIINTNDLL-KKRDVSAWIRYKID 174
             A      YE+                   LD  +L+    D + +  D+      K  
Sbjct: 185 VAAGRTWREYEQVMTLRGAVGMADPAASPGALDAAELLGAALDAVAEDPDLLLHPLGKPG 244

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                + +D+ Q     Q   + SL            +   +  V D  QS++ F GA  
Sbjct: 245 SRF-VVFVDDAQHFDP-QAARLSSLA--------ARRADLAVCTV-DPDQSVFWFQGA-- 291

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                      +      ++   + L  S R ++ +  +V  V              +  
Sbjct: 292 -----------QTGPGLWREAEQLRLGPSQRLSSSVAQLVAAV-----------APRSAP 329

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                         +L+  V +Q +        +          +   S +A        
Sbjct: 330 QVATCRESAGEAQTRLYPTVAAQAEGVVEALCRA------HARDQVPWSRMAV------- 376

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++ +  +      R     D+ + +                      +V      +   
Sbjct: 377 -LVRSVPVLEPSLARAAALADVPLRLAAMSGP-----------LAANTAVSALLSLLKAL 424

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                +       ++S     S        L            +     E V    +   
Sbjct: 425 ARKALEPATALELLVSPIAGASV--AQARSLRRLLRAQEPDRPSLDLLAELVLGAREHDV 482

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
              + + + V +   E +  A   +          A    ++        V  +      
Sbjct: 483 PEPVLRLRRVWRAACEALG-APAPTVETVLWAAWSASGLEERLPEGDFAAVRALFAAARA 541

Query: 535 FTLRNEQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
               +  ++ + L      +E+     +         + V +++ H A G E  VV +  
Sbjct: 542 QRAADAADAAAELARFAERVERERLPVSATLGDGGGSDAVTLLSAHAAAGQEWDVVVVCG 601

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               ++         +                        ++     +K    +  RLLY
Sbjct: 602 VQEGLWPGFSESSSLLGVDELAAALA-----------GTPAEAKLDARKQVLAQERRLLY 650

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT----------- 701
           +  +RA +QL++       +   S        +          ++               
Sbjct: 651 LACSRAREQLLVTAVEGEGDLVPSRFLAPLAPLALRTQEHGPAERAAAAPPPAPATPWSS 710

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP------Y 755
             +  +       +  H           + Q       PK      +   +EP       
Sbjct: 711 AGVVAELRALACGADQHRAQRAAAALAALAQAGVIGAHPKSWHGLAEVSTSEPLAKDGSL 770

Query: 756 ILNPSTIDTKGKTNLES------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRK--NFITS 807
            L+PS +       L          +  +    G  +H L  V    PE + +      +
Sbjct: 771 TLSPSRVQQLLDCPLRWLFERAMPAAPGEAAAIGTAVHLLASVADRFPEDELQAALDAAA 830

Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGR 867
                    P    +     + RL    M     S    ++V V   +      + + GR
Sbjct: 831 RAADERSARPPWAAQRRREQLARLFAAFMAWRNASRGELTQVGVEIPVEMSVSGVTLRGR 890

Query: 868 IDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLI 925
           ID++  +    + I + KT                 QL+ Y+ ++     ++ +    L+
Sbjct: 891 IDRLERTARGELVIVDLKTAATPRSAASVRED---PQLACYQLVV-RMARDEPVAGGKLV 946

Query: 926 YV 927
           Y+
Sbjct: 947 YL 948


>gi|326776761|ref|ZP_08236026.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
 gi|326657094|gb|EGE41940.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1]
          Length = 1208

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/549 (12%), Positives = 150/549 (27%), Gaps = 72/549 (13%)

Query: 418  IKDLMALGRFILSQ--EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
              D       + S     D + +  L   L +       ++     E         +   
Sbjct: 586  WLDTETALTLLTSPLGSMDAADLRRLGRALRDEERAAGIRVPAPSDELLARALAEPERLV 645

Query: 476  CGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISR------FGNE 524
                 + H  + +  L+  A+       +  +    +        +           G  
Sbjct: 646  THDPAYAHGAQRLGALLRKARELLEGGGTAEEALWALWNGTPWPGRLERAALRGGAGGRN 705

Query: 525  VIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVH 578
                LD     F       E+         + E++            +A  + VR+MT H
Sbjct: 706  ADRDLDAVCALFETAARAEERTGGRGALNFLEEVDAQDIAADTLSRRTARPDAVRLMTAH 765

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             +KGLE  +V L      ++     +   +        G+   +                
Sbjct: 766  RSKGLEWRLVVLAGVQEGLWPDLRRRGSLLEADRIGGDGLAEPLTPG------------- 812

Query: 639  LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM------------VY 686
               +   E  RL YV  TRA D+L++      +++     R   ++              
Sbjct: 813  ---ALLAEERRLFYVAATRARDRLVVTAVKAPADDGDQPSRFLTELGVEPRDVTGRPRRP 869

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
             +        +    +    +                 + E               L  P
Sbjct: 870  LAVAALVAELRATTVDPAASEALREAAAHRLARLAALTDDEGQPLVPAAHPYRWWGLEEP 929

Query: 747  IK-----NDINEPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRGLIIHKLL-Q 791
             +      D ++P  L+ S +D       L+  L                G ++H L  +
Sbjct: 930  TRSAVPLRDRDQPVTLSGSALDQLANTCALQWFLGREVKADAPATAAQGFGNVVHVLADE 989

Query: 792  VIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
            V  +         +            +A     +E      ++ R L   ++       +
Sbjct: 990  VASSRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQARAALERFLHWHVLDRGGRTPT 1049

Query: 846  YSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
             SE      +   +  + I G +D++    +   ++ ++KT    P + E        QL
Sbjct: 1050 ASEHDFDVTLEAGEYAVRIRGSMDRVEQDAEGRAYVVDFKTGKGAPTKDEVAS---HPQL 1106

Query: 905  SIYEKILKD 913
            ++Y+  +++
Sbjct: 1107 AVYQLAVRE 1115



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/463 (13%), Positives = 134/463 (28%), Gaps = 93/463 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L      Q +  + +    +       L  A  L+  S  +       
Sbjct: 92  AAVELRDRMAARLGAARGPQATTFHSFCYALVRAHQDADL-FADPLRLLSGPEQDVTVRE 150

Query: 68  LLSS-FFLTQKF--------TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+    L +            +  + T+    +   +      ++   + +        
Sbjct: 151 LLAGQLDLEKAGLAHVRWPDELRSCLTTRGFADEVRAVL-----ARSRELGLGPDALAAF 205

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++     + A    A Y +      VLD+ +L+     L ++ +    +  ++    +
Sbjct: 206 ARRTGRPDWSAAAQFLAEYLDILDAQGVLDYAELVHRAVLLAERPE----VAERLAGSYD 261

Query: 179 HILIDEVQDTSLIQWEVIRSLTED--------------------------------FFVG 206
            + +DE QDT   Q  ++ +L  +                                    
Sbjct: 262 AVYVDEYQDTDPAQVRLLHALAGNRGRTPEYTRGRGEEGRGDGGRGDGGRGEEARAGGAR 321

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                  RTL A GD  QSIY+F GA+   +L      ++     G    +  L  S RS
Sbjct: 322 SEAARGGRTLIAFGDPDQSIYTFRGADVNGILDFPDAFRR---ADGDPAPVGVLTTSRRS 378

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            A +L     +       +  ++         + R G       +    ++ ++      
Sbjct: 379 GAGLLAATRLLTRRMPLTRLPADMVRAHRDPAAVRDGGRVETYTYPTASTELEN------ 432

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                                     I++++    +        +  +++ VLVR     
Sbjct: 433 --------------------------IADLLRRAHLED-----GVPWQEMAVLVRA--GG 459

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             +  + R L +      V  D   L    A+  L+   R + 
Sbjct: 460 RSLPAVRRALTSAGVPLEVDGDDLPLRHEPAVAPLLTALRTVA 502


>gi|308070911|ref|YP_003872516.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
 gi|305860190|gb|ADM71978.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
          Length = 600

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 96/615 (15%), Positives = 171/615 (27%), Gaps = 140/615 (22%)

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI----KIRDRFNTYK 118
            E     +  F      P K I  +E  +   ++   L  S  E            +   
Sbjct: 98  AEVIKPFAHLFDYSIPMPLKIISQKEKKQIFNEVLSYLNISPKELSIDEMDKERSLSITG 157

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           M + T+    LA    A YE+       +D+ D++     L++      ++R  ++ +  
Sbjct: 158 MSQVTIPRYDLALSAAAEYEDRLHSLGKVDYIDIVKYATLLIQNE---KYVRNCLEAKFP 214

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            IL+DE QD      E+I ++          +S+   +FAVGD  QSIYSF+GA P  +L
Sbjct: 215 WILVDEYQDLGKPLHEMILAIF---------NSTKIKIFAVGDPNQSIYSFNGAIPHYLL 265

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
               I            + I+L  +FRS  +I+                           
Sbjct: 266 ELYNI---------PNINPIKLLTNFRSNQEIIDA------------------------- 291

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                     QL     S  + +   +      +   + Q          I   I    G
Sbjct: 292 ---------YQLALPPASIENYRAGTRIGEKAEFNFFVCQHGIEDQFKEVIRSVIPQCAG 342

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                           +I VLV        ++     L  +  I    N R        +
Sbjct: 343 QGVPLD----------EICVLVANNYHAKRMSE----LFQEAGIPYHINKRKDFEISEIV 388

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           K L+                      L   S  D F+          + ++        +
Sbjct: 389 KWLIQ--------------CASWSIKLGRESFSDAFEFWA-----GVIMQHKGYSILDNL 429

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTL 537
           ++ +     + +           D+   +           +     + +D     +    
Sbjct: 430 TERKRFYDVLRK--SRLHSHKLSDWLNSVEEQFNLSALLTNSDAYPDEMDNFKTLIELAT 487

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             E               ++            N+V I T H++KGLE  VV L+    + 
Sbjct: 488 SGE-------------FSEFSVENFVKLLKPENQVTISTRHSSKGLEFEVVILLGLEEEN 534

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F      +                                       EE  R+ +V ++R
Sbjct: 535 FPSYRSLQSTDPN--------------------------------KLEEEFRMFFVCISR 562

Query: 658 ASDQLIICKHSNTSN 672
           A     + +    SN
Sbjct: 563 AKRACYLVRSLKESN 577


>gi|134302306|ref|YP_001122275.1| UvrD/REP helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134050083|gb|ABO47154.1| UvrD/REP helicase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 688

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/594 (14%), Positives = 171/594 (28%), Gaps = 126/594 (21%)

Query: 98  EKLKKSQDEFIKIRDRFNT--YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           E+++  ++    ++   +    K+ +       L   +   + +  K    + ++D+I  
Sbjct: 136 ERIETFKNYISLLKSDLSLDNSKLKELNSKEKKLLDKIFNQFNQECKNQKAITYDDMIYL 195

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              L +K         ++    +HI+IDE QD + +Q  ++R L                
Sbjct: 196 PAKLFEKD---KNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVG----------RTTY 242

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           + AVGD  Q+IY + G+ P  +L   K+          +      L  +FR    I  + 
Sbjct: 243 VMAVGDVDQTIYQWRGSTPYYMLEGFKKDF--------KGVEQYTLSYTFRYGDLISLMA 294

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +    +        +   +                                       
Sbjct: 295 NNIIVNNKKRHNNLCITYPKLNK------------------------------------- 317

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
               + S    + ++   +  +I             + A DI +LVRK   T +      
Sbjct: 318 --ATDISILDSSDKVVLKLKALIQNG----------VDASDIAILVRKYNSTTVFELS-- 363

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF---------VCMLKSPL 445
                + ++        +      K +                           ML  P 
Sbjct: 364 --CLYHDLAYSIVADKNIFSENLFKAIYGYLMLFNKGYGFDKHTLEQRVEFIKAMLDYPS 421

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF---QHVIKYIHELIHIAQFCSP-- 500
               +D   K+ +Q     +            + K    ++++   +   +I        
Sbjct: 422 LYLKKDLKQKLASQIASDISQAANCIAALKETVDKAFKQKNILAISNSWRNIFNNVRIKK 481

Query: 501 -HDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
                  IL +    +Q     G         + +   +   +   ++L E I  L Q  
Sbjct: 482 ADKAIDFILQSLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIEFIELLYQLY 541

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
               + + +N N+++IM++H AKGLE   V + D     F      K+            
Sbjct: 542 TRSNQQNQSNPNQIQIMSMHRAKGLEWDYVVVHDATEGGFFGDKNTKV------------ 589

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                     EE  RL YV +TR    L I    + + 
Sbjct: 590 ---------------------DDEIIEEERRLFYVAITRVKKHLFIVSSDDITR 622


>gi|289763385|ref|ZP_06522763.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           GM 1503]
 gi|289710891|gb|EFD74907.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis
           GM 1503]
          Length = 540

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/430 (14%), Positives = 131/430 (30%), Gaps = 63/430 (14%)

Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + S +SL+ L+  +       ++   +A   +V +++ H A G E  +V +      ++ 
Sbjct: 65  RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 124

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +   +   +      D    +    S              +     E  RLL   M RA 
Sbjct: 125 NTVPRGGVLGTQRLLDELDGVTKDASM-------------RAPLLAEERRLLVTAMGRAR 171

Query: 660 DQLIICKHSNTSNEKK----SNQRTWYDMVYDSFHNDERVKKIKLTNS------------ 703
            +L++    + +             ++++   +  + E V    ++              
Sbjct: 172 RRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRL 231

Query: 704 --INKDEWIAYEWSTHHPENTPLEREETI----KQLMDEQKIPKKLFSPIKNDINEPYIL 757
             +      A + +      T L R            +   +     S    D ++   L
Sbjct: 232 RVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTL 291

Query: 758 NPSTIDTKGKTNLESLLSDNQTF-------NRGLIIHKLLQVIFTLPEHKRKNFITSY-- 808
            PST+       L  L   +            G ++H L                  +  
Sbjct: 292 TPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGH 351

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD------- 861
               A+ + A E       I   ++      A S    +EV V   I+   +D       
Sbjct: 352 LPFGAQWYSANELARHRAMIQAFVQ----WRAQSRSELTEVGVEVDIDGALEDGSGQARK 407

Query: 862 IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD---SYPN 917
           I + GR D++       + I + KT      + +       AQL++Y+  + +      +
Sbjct: 408 IRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQ---HAQLAMYQLAVAEGLVRAGD 464

Query: 918 KSLVCLLIYV 927
           +     L+YV
Sbjct: 465 EPGGARLVYV 474


>gi|171316687|ref|ZP_02905900.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
 gi|171098138|gb|EDT42949.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5]
          Length = 568

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/549 (13%), Positives = 155/549 (28%), Gaps = 140/549 (25%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L A Y++A ++N  +DF+D++  + + ++  D+  +           +L+DE QDT  
Sbjct: 147 AALYAAYQDALERNGKIDFQDMLRLSVERMQHGDIKPY-------RFTDLLVDEFQDTDP 199

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+  +               +   +  VGD+ QSIY F  A      R           
Sbjct: 200 LQFRWVELHAR----------AGTHVTVVGDDDQSIYGFRAA---LGFRGMESFASTFEA 246

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L  ++R  A+IL   D+V     +       +   +               
Sbjct: 247 -----QRVVLGSNYRCRAEILAAADRVIQNNVDRMPKVLHADRGVG-------------- 287

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                 FD    ++ A++ A                    + ++
Sbjct: 288 ---------------GVVAARRFDDEYGDAVAAVEA-------------------LQPKL 313

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              +   +L R  +    I    R     + +         + +      +  L + +  
Sbjct: 314 TAGESCAILARTNRILDPIESACRS----HGVPYYRASGGSVLNKPQAALMCNLLQVVEG 369

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ----KFANCGISKFQHVIK 486
           Q+ +     +L       S  D+  +  +        +  +           + ++  +K
Sbjct: 370 QKQNG-IDAVLG--YMGMSSYDLGALHKRMGTAFVQLQKQELVGIGLREETATAYRAFMK 426

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            + E   + Q          +              G+  I  +    +   R   +    
Sbjct: 427 RLGEWQALCQRSFHSLALEGV-----YEWMMTYAKGDVAIRAIQCIYDVVSRLNGSFTER 481

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIM-TVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           ++ L              ++   + V ++ T+H++KGLE   V++  +   V        
Sbjct: 482 IEFLKR-----------DNNKPGDGVLVLTTMHSSKGLEYDHVWISRSEEGVVPDDKSP- 529

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                                 + E  RL YV MTRA D L + 
Sbjct: 530 --------------------------------------ESEERRLFYVAMTRARDSLTVS 551

Query: 666 KHSNTSNEK 674
                   +
Sbjct: 552 SIKKNPVSR 560


>gi|271969553|ref|YP_003343749.1| superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270512728|gb|ACZ91006.1| Superfamily I DNA and RNA helicase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 689

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 79/663 (11%), Positives = 166/663 (25%), Gaps = 181/663 (27%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
             ++         +               + + ++                         
Sbjct: 58  LAVTFTTRAAGELRQRLRQLGTPGVQARTFHAAALRQLTY--------FWPRVIGGDPPR 109

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
                    +    + +KN    E+   + +++        +           K  ++  
Sbjct: 110 VIESKLPLLIDACRSVRKNPDRSELRDIASEIEWA---KVTQVGPEDYAEAARKAGRTPP 166

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                   L   YE  ++   ++DFE ++  T  ++ +      +  +I Q+  + ++DE
Sbjct: 167 VPAEEVFRLYDAYETLRRDRHLVDFETILELTAAVMTEH---REVAAQIRQQYRYFVVDE 223

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD + +Q  ++ +                 L  VGD  Q+IYSF GA P+         
Sbjct: 224 YQDVNPLQKLLLDTWLG----------GRDDLCVVGDPNQTIYSFTGATPR--------Y 265

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
               +      ++I+L   +RST  ++++ ++V             +   +   + R   
Sbjct: 266 LTGFSVEHPDAAVIKLVRDYRSTPQVVSLANRVLDRAR--------TPHKLALIAQRPDG 317

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              V                             +       A  +A  +  +        
Sbjct: 318 PEPV---------------------------FAEYDDEPAEAEGVARAVKKLADGG---- 346

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 +  ++I VL R    + +             +  +        +   ++  + L
Sbjct: 347 ------VPTREIAVLFRVNAQSEVYEQAF----AKAGVPYLLRGADRFFERPEVRQAVVL 396

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
            R                      +                +          G  K +  
Sbjct: 397 LR--------------------GAARSAADDDELAPTVHHILAGIGLTPEAPGGGKAREK 436

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            + +  L  +A                   +   +  G                      
Sbjct: 437 WESLRALADLA-------------------EDLAAEGG---------------------- 455

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             L   ++ELE+               V + ++H AKGLE   VFLV     +       
Sbjct: 456 -DLPAFVAELERRASEQHAPPVEG---VTLASLHAAKGLEWDAVFLVGVTDGMMP----- 506

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                         +I        EE  RLLYVG+TRA   L +
Sbjct: 507 ------------------------------IIYAETPDQIEEERRLLYVGITRARAHLAL 536

Query: 665 CKH 667
              
Sbjct: 537 SWA 539


>gi|67906651|gb|AAY82742.1| predicted DNA helicase II [uncultured bacterium eBACmed18B02]
          Length = 365

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 107/352 (30%), Gaps = 56/352 (15%)

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               ++ +LVR    T               +           +   IKD +A  R I  
Sbjct: 34  FSYNNVAILVRAIFQTREFEERF----LKIGMPYRILGGTKFYERAEIKDCVAYLRLIHQ 89

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISK------FQH 483
           ++DDL+F  ++ +P     +  +  I    +     +     K     + K         
Sbjct: 90  EKDDLAFERIVNNPKRAIGDGTLKNIHEFAKENNLNLERASFKMLEQNLIKPKAKIGLGF 149

Query: 484 VIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFG---NEVIDVLDEFLNFTLR 538
            I  +++  +    +  +      ++L          ++        ++ + E L+    
Sbjct: 150 FINSLNKWRNDLQIKKSNHVKLLQIVLDESGYSAMLKNKKDLDNENRLENIKELLSAMKE 209

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +         L S LE            +  +V +MT+H AKGLE  VVFL      +F
Sbjct: 210 FDN--------LESFLEHVSLATSVDQEWDGEKVNMMTMHAAKGLEFDVVFLPGWEEGLF 261

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H+                                  I+   +   EE  RL YVG+TRA
Sbjct: 262 PHQKS--------------------------------IEEKGQKGLEEERRLAYVGITRA 289

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             + II    N   +           + +    +          + N++++ 
Sbjct: 290 KQKAIISFSMNRFYQGDWIDSMASRFIEELPEKNLEKNSFFDDEANNEEDFE 341


>gi|116620812|ref|YP_822968.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
 gi|116223974|gb|ABJ82683.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076]
          Length = 749

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 94/572 (16%), Positives = 161/572 (28%), Gaps = 71/572 (12%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
               +      TL     A  E  K        +DL      L  +      +       
Sbjct: 220 ADGARLQTIFSTLFAQAEAKLESLKLNQNSASLDDLTRQLATLASR----RSLLGTGGPT 275

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             ++ +DE QD+   Q  ++ +L  DF            LF VGD KQSIY F GA    
Sbjct: 276 FRYLFVDEFQDSDESQIRLVAALCRDFGAV---------LFVVGDIKQSIYRFRGA---- 322

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                   +K  ++ G   +   L  ++R+ + +L  +   FS       L   S   + 
Sbjct: 323 TYTAFNALEKAISSFGGTLAEYTLAKNYRTASAVLDRLHPRFSSWNANGWLPYRSQDRLV 382

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                 G                             F S            ++   I   
Sbjct: 383 PTVQDQGS----------------------------FRSSGYRKKGERHQAQVLEWIREA 414

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
             T     +  +R        VLVR  ++      L     +   I+        L    
Sbjct: 415 ADTLPTSGSDGRRPRA----AVLVRTHREA----ELVHEWCSGAGIACEVRRGGDLFASE 466

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--------QRHETETVYE 468
           A  DL+AL    L   D ++ + +  +            +             E   + E
Sbjct: 467 ATYDLLALITAFLHPGDSVALLNLAATAYSEVHIPWPLLLRHKGDGAALRSAMENHQLTE 526

Query: 469 YIQKFANCGISK-----FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           +         S+      +  I+++     I                +    +  ++ G 
Sbjct: 527 HWAGLVETSRSEPVLSLLRSAIEHLEPSRRIRDRERERIAAEHSDWNEAEVLREANQAGI 586

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELE-----QYPPTIKRAHSANHNEVRIMTVH 578
                LD  +    +    +++SL  +   L                      V   TVH
Sbjct: 587 RYQLDLDRLVELMHKTFNENFASLYSVQEWLTVQRSVNREQERLDLPDEVLPAVLCTTVH 646

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG E   V L  T       +    +  + +        +    S   N++ +   + 
Sbjct: 647 ASKGAEFHTVILPFTHRPFRFDRSELLLTQVANRWRAAWRLMVDEDSVITNSLYASSNQD 706

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                + E  RLLYV MTR   +L IC   N+
Sbjct: 707 EALEVRREETRLLYVAMTRCQRRLWICAFENS 738


>gi|167947686|ref|ZP_02534760.1| DNA-dependent helicase II [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 212

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 21/162 (12%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y+ A ++  V+DF +L++  ++L +       I     Q   H+L+DE QDT+ I
Sbjct: 47  RIYTEYQAACERGGVVDFAELLLRAHELWRD---RPDILQHYQQRFQHVLVDEFQDTNAI 103

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  +R LT               LF VGD+ QSIY + GA  + +   ++         
Sbjct: 104 QYGWLRLLTA----------GRNNLFVVGDDDQSIYGWRGARVENIQSFEQDYAAS---- 149

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                +I L  ++RST +IL   + + +   +  G +  +  
Sbjct: 150 ----QLIRLEQNYRSTGNILNAANALIARNPSRLGKNLWTED 187


>gi|54308663|ref|YP_129683.1| hypothetical protein PBPRA1470 [Photobacterium profundum SS9]
 gi|46913092|emb|CAG19881.1| Hypothetical protein PBPRA1470 [Photobacterium profundum SS9]
          Length = 775

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 95/659 (14%), Positives = 182/659 (27%), Gaps = 144/659 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +E  +K+  +L F+D ++ +  +LK       IR    Q    I++DE QD +  Q+
Sbjct: 157 YWQFETIRKEQKLLFFDDWLVESVHVLKTN---TNIRDFYHQRFKFIVVDEFQDINTAQY 213

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +++ L                L AVGD  Q IY + G+ P+ +L               
Sbjct: 214 WLLKHLLA----------PNAQLVAVGDVDQCIYKWRGSAPQFMLNFDEDF--------A 255

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             +   L  +FR    +      + S  +                               
Sbjct: 256 PATTYTLSRTFRFGHSLALSASHLISNNKQRF---------------------------- 287

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                    +    S  +  D+L +   +      I  +I   +              + 
Sbjct: 288 --------HDFLTVSHDNVDDTLVEAIGSERQVGEIVQSIQQYLAQGG----------KP 329

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG--RFILSQ 431
            ++ +LVR+   T L        +  Y++ V         +   + D+M+L   RF  ++
Sbjct: 330 SEVAILVRRWSQTLLFELAFLTKQIPYQMPVPSVLAHS-REVKLLLDVMSLATGRFNENE 388

Query: 432 EDDLSF--VCMLKSPLFNFSEDDIFKIC---TQRHETETVYEYIQKFANCGISKFQHVIK 486
               +     +L  P        +  IC        T+      +     G  K   +I+
Sbjct: 389 PHFRATSLFNLLCFPHCYVPNAQLRPICDELANMPATQWELHAKKLEKAKGDGKLDTLIE 448

Query: 487 YIHELIHIAQFCSPHDF-------FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
            ++ L  + Q  S               L A   + +  +    E I+ LD         
Sbjct: 449 RVNLLARLQQKGSVKAVSVYRQYRAESQLDAWIWKTESTASEIEEAIERLDSIETVLDSM 508

Query: 540 EQNSYSSLQELISELEQYPPTIKRA--------------------HSANHNEVRIMTVHT 579
           +Q+   +LQ      ++     +                             V++ T+  
Sbjct: 509 DQDCGKALQYFEYYSQKSASNSRGNSYQNPSSSQQQQQQQGAIGGADEAVQPVQLTTIFR 568

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKG E   V+L       F                                   +     
Sbjct: 569 AKGCEYNHVYLPYWDKDAFP--------------------------------YVNRSSAG 596

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK---KSNQRTWYDMVYDSFHNDERVK 696
             +  EE  RL YVG+TRA +Q  I        +    + ++     ++  +    + + 
Sbjct: 597 ISADTEEERRLAYVGITRAKEQAKIYYTVEPVKKGTYVRPDKNASQFVLEANMKVAQALG 656

Query: 697 KIKLTNSINKDEWIAYEW-------STHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
            +                               P E   T   + +       +  PI 
Sbjct: 657 PMLYEAQPIPYHKSPIAQGYCKHLGRLDDMAEAPPEPVITAPSVKEGYSYKWAIEQPIP 715


>gi|170782261|ref|YP_001710594.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            sepedonicus]
 gi|169156830|emb|CAQ01997.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp.
            sepedonicus]
          Length = 1089

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 118/1048 (11%), Positives = 277/1048 (26%), Gaps = 178/1048 (16%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVS----LSMETGNPTILKKAQTLQQA 56
            L++   L +                F+V       +      + TG       A  L   
Sbjct: 84   LRDELALRVGVPTLGPLARTATSVAFEVLARRAAETGTEPPRLLTGAEQDQIIADLLAGH 143

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
             +          L            + +  +    +  +L  +  +       + +    
Sbjct: 144  EELGTGPAWPDPL--------GVEVRRL--RAFRTELRELLMRATEEGVRPDALAELGRA 193

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKK--KNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            + + +        A      YE+     +   LD  +L+     L+ + +          
Sbjct: 194  HDVPE-----WIAAAEFAREYEDVVDSFRGDHLDSAELLAEAVLLVSRGEALT------- 241

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
              I  ++ D++ + ++    ++R+L                + A GD   +  +F GAE 
Sbjct: 242  -GIRLVVADDLHEATVATLSLLRALAA----------RGADVIAFGDPDVAAATFRGAEA 290

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
              + R   +              + L    R    +  +   V +    A    +     
Sbjct: 291  SALGRLSTVLG------LPGLRTLVLDRVHRQPPALRALTSAVTARIGAAGAGRQRQAG- 343

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                       G V   + +          +                    AR +     
Sbjct: 344  --------SAPGLVDDADPIQVIEAPTRALELARLARRL-REEHLLGGVPWARMVV---- 390

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
             ++ + ++     + +  A+   V  R       +      L     + VV   R  LT 
Sbjct: 391  -LVRSGSLVPQVARSLATAE---VPTRTAVAGRALRDDLAALALIRAVDVVL-GRVPLTP 445

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             +A +        +   +     + M +  L         ++  +        E +    
Sbjct: 446  DIAAELATGPLGGLDGVQLRRLRLAMRQEELAGDGHRSSDELLVEALAAPGRLETLDLAP 505

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG---------RQQFISRFGNEV 525
               +++    ++   EL   A   +  +    +               +   ++   N  
Sbjct: 506  ARRLARLARTLQGARELA--AADGTIEELLWHLWEGSGLATPWFEQALQTGIVADQANRD 563

Query: 526  IDVLDEFLNFTLRN-EQNSYSSLQELISELEQYP-PTIKRAHSANHNEVRIMTVHTAKGL 583
            +D +        R  E+N      + + EL     P    +     + V + T     G 
Sbjct: 564  LDGVVALFTAARRFVERNPGRPASDFVEELLGAEVPEDTLSPQPLADTVLVATPSAVVGA 623

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
               VV +      V+ +  ++   + P            P+  +    +       +   
Sbjct: 624  GYEVVAVAALQECVWPNLRLRGSLLHP------------PRLSAVARGLDGADVDERAEV 671

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH------------- 690
              +  R+L + ++RAS  +++   +N         R        +               
Sbjct: 672  LGDELRMLALAVSRASRVVVLSATANDEEAPSPFLRLVPPAPGQAEAEAGAEAGRVAKDA 731

Query: 691  ---------------------NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE- 728
                                   E     +    ++    ++ + +   P +   ER   
Sbjct: 732  PAALRIRPDHPLSLRGLVGALRRELAVVHRDAVLLDDGRVVSGDRTARRPADATRERGLA 791

Query: 729  -------------TIKQLMDEQKIPKKLFSPI---KNDINEPYILNPSTIDTKGKTNLES 772
                         T     +   + +   +       D      ++PS ++   ++ L  
Sbjct: 792  AASALARLAAEGVTGADPAEWYGLREPSTTEPVVDLTDPEARVPVSPSRLEAFERSPLNW 851

Query: 773  LLSD------NQTFNRGLIIHKLLQVIFTLPEHK-RKNFITSYCTKNAKLWPAK------ 819
             +        +     G I+H +++     P+   R   + +         P +      
Sbjct: 852  FIDQASGGSTSTAMGIGTIVHAVMEEASLDPDADLRPPALEARLDARWGELPFESPWVGE 911

Query: 820  ----EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS- 874
                +   L+  ++  L +       + D    ++  G          + G+ID+I ++ 
Sbjct: 912  RERRQAGELIAGVSGYLRD------FAADGGRMLAAEGGFELEVGVARLRGKIDRIELTK 965

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI-----LKDSYPNKSLVCL-LIYVS 928
            +  + I + KT  H P   E       AQL  Y+       L+            L+YVS
Sbjct: 966  EGAVVIVDLKTGRHYPTRAEIPA---HAQLGSYQLAFTEGSLEQVPAEAPSGGAKLLYVS 1022

Query: 929  EPK----VFIIPQNKLN-KAFAEISTKI 951
                      +PQ  L  +       +I
Sbjct: 1023 GGTRGLPYRELPQEPLTREELDGFRARI 1050


>gi|25027346|ref|NP_737400.1| putative helicase [Corynebacterium efficiens YS-314]
 gi|259506515|ref|ZP_05749417.1| helicase [Corynebacterium efficiens YS-314]
 gi|23492627|dbj|BAC17600.1| putative helicase [Corynebacterium efficiens YS-314]
 gi|259165935|gb|EEW50489.1| helicase [Corynebacterium efficiens YS-314]
          Length = 1024

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 107/863 (12%), Positives = 216/863 (25%), Gaps = 142/863 (16%)

Query: 93  SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
           +  L++ L ++ +  +   D        +    +   A      Y++  +      +   
Sbjct: 167 ARQLRDFLLRAVERGVGPDDLVRY--GQQYNRPAWVSAGEFLREYQQIMRLAGSHSYSAS 224

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
            + T  L                    + +D+ Q       E+I               +
Sbjct: 225 ELVTGALACGDP---------RTTYRGVFVDDAQHLDPKSAELITRFI----------PA 265

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
                  GD +QS++ F GA P  +L  +                I L    R T  I  
Sbjct: 266 AELAVIAGDPEQSVFHFRGANPDFLLDFE------------ANRSIHLGEGRR-TPLISI 312

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
            V               D       R+  +  V    +   V S        +       
Sbjct: 313 AV-------TETASAHNDLLADTVRRAHLLDGVDWSDIAVIVRSAGMIAPVRRVLLAAGV 365

Query: 333 FDSLPQESSASILARRIAYTI---SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
              +          R +A  I     +    T        +        +  +R    L 
Sbjct: 366 PVHISPTDVVLSEQRIVAAMILGLRALTEELTPLELEDLLLGPIGGADPVTLRRLLRGLR 425

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               R   +   I V                     R +L+ + D   +  L       +
Sbjct: 426 QAEMRADGHRRAIEV--------------------LRGLLNTDADEELLAFL-------T 458

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
           + ++  +   R       E +   +                   I          +  L 
Sbjct: 459 DRELELLERVRSVLRAGREAMAGGSTE----------------EILWAVWEATGLSSHLS 502

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH--S 566
           A   R        +  +D +    +      E+   + ++  I  + +            
Sbjct: 503 AVSLRGGAAGSQADRDLDAIMALFDAAGDYVERYPTAGIRSFIVHISEQELPTGVRERRG 562

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +   V + T H   G E   V + +     +         +      D           
Sbjct: 563 VSPEAVTVTTAHATTGREWRHVIVAEVQEGSWPSLGETGTLLGQEELIDL---------- 612

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
              NI  D I         E  RL +V  +RA DQL++   +   +++      + + + 
Sbjct: 613 LDENIDPDTIISRSVDRLAEERRLFHVATSRACDQLLVTAVNTPDSDEVREPSRFLEELA 672

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEW---------------------STHHPENTPLE 725
           ++   +    +      + + E + +                       S        L 
Sbjct: 673 EAHRVEITHIEGPGETPLAEPEVLGHRLLSVPALVAELRRVVTDPGELGSRRRQAARQLN 732

Query: 726 REETIKQLMDEQKIPKKLFSP---IKNDINEPYILNPSTIDTKGKTNLESLLSDNQ---- 778
           R         +      L  P    +        L+PS I+      L + L        
Sbjct: 733 RLAGAGIPGADPDTWLALREPSTTAELIPEGRVWLSPSRIEALMNCPLRASLDRLDSEDE 792

Query: 779 ---TFNRGLIIHKLLQVIFTLPEHKRK----NFITSYCTKNAKLWPAKEYKNLLLSITRL 831
                 RG ++H   + +    + +R                        ++   +ITR 
Sbjct: 793 TPIAMLRGTLVHAFAEAVARGADPERAGEMVTEAYMDLANVPSWSRETTEQDFRRTITRT 852

Query: 832 LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVP 890
                 +        +E+ V   I+       I GR+D++       + I + KT     
Sbjct: 853 HTWLQTSRVTFDLVGTEMEVEVGISTEVG---IRGRMDRLERNHAGELVIVDLKTGRQAA 909

Query: 891 QEIEHIPYTHIAQLSIYEKILKD 913
            + +       AQL+ Y+  L  
Sbjct: 910 VQKDM---GEHAQLASYQLALSR 929


>gi|256374783|ref|YP_003098443.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919086|gb|ACU34597.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 1001

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/437 (15%), Positives = 131/437 (29%), Gaps = 74/437 (16%)

Query: 6   GLSLNESYEL------IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           GL  ++          +     P      +  ++   L +E G P     A T  + +  
Sbjct: 471 GLDPDQRAAAGVEGGPLLIIAGPGTGKTRTLTHRLAHLVVERGVPPEQCLAITFTRRAAE 530

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
           +  E   +L  +       T    +    + ++   +   L +S       +       +
Sbjct: 531 EMTERMAALAPAHAPAMTITTFHALGVLVLREQHDRVG--LSRSFGIADPDQQLAVALSV 588

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                A+  L    +  Y++A +   ++DF+DLI     LL+     A +          
Sbjct: 589 AADEKAAKELLATAHPAYKDALRAQDLVDFDDLITLPLALLEDD---ADLAASYRDRWRW 645

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           + +DE QD    Q+ ++R L            S   L A+GD  Q+IY F GA+    LR
Sbjct: 646 VSVDEYQDVDEQQYRLLRQLA----------PSDGNLTAIGDPDQAIYRFRGADVGFFLR 695

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +                  L  ++RS+A ++T   +V +                    
Sbjct: 696 FREDFPA--------ARTAHLTRNYRSSAPVVTGALQVVA-------------------- 727

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     L      +   +                  +S    A  ++ T+  ++G 
Sbjct: 728 -------PTTLVPGRELRPFGEHGDALIGVHHA-------ASEQAEAVFVSRTVEQLLGG 773

Query: 360 DT-------IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            T          +   R +   D  VL R  + +  +            +         L
Sbjct: 774 ATFHAFDSGRVDSDGARDLGFSDFAVLYRTDRQSRAVVDALTA----SGMPFQKRSHDRL 829

Query: 413 TDHLAIKDLMALGRFIL 429
            D   ++ ++   RF  
Sbjct: 830 ADRPGVERIVRELRFAA 846



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 34/131 (25%)

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            +  +   SEL               + + ++T+H +KGLE PVVF+V     +   +  
Sbjct: 876 GADFERFHSELALGVEVDTWDP--RADRISLLTLHASKGLEFPVVFVVGCEDGLLPLRWP 933

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
               +   +                                 E  RLL+VGMTRA   L 
Sbjct: 934 GADPVPDEV--------------------------------AEERRLLFVGMTRAQRHLF 961

Query: 664 ICKHSNTSNEK 674
           +   +      
Sbjct: 962 LSHSTGRPRSP 972


>gi|298529833|ref|ZP_07017236.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511269|gb|EFI35172.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1027

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 100/665 (15%), Positives = 184/665 (27%), Gaps = 188/665 (28%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMET-----GNPTILKKAQTLQQASQTQCIEERFSLLS 70
           + +++ P     ++   K      +      G+   L +A+T+            F    
Sbjct: 501 LEQEVNPRHILVLTFTRKAARELKDRLISIHGDDQALPRAETM--------HAMAFEHWK 552

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLK-EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
             +  +     +    +   + SPDLK   LKK+  E    R++                
Sbjct: 553 RVYGEEPLILGEEEAFKVFAESSPDLKGSALKKAWQETGAAREQLLALPAAG-------- 604

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                 +Y   K+    +D+ DL+      L+          K  +   H+L+DE+QD S
Sbjct: 605 -----ENYNRQKQDWNQVDYADLLEFWLQELQS--------GKFVRPYTHVLVDEIQDLS 651

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q E+IR L  +   G          F +GD +QSIY F GA        +        
Sbjct: 652 RLQLEIIRELLPEKGEG---------FFGIGDPRQSIYGFRGAVGDVPQVLRSFWP---- 698

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++ L  ++RS+  IL +   +F    + +           +R++         
Sbjct: 699 ----DLQVVSLKENYRSSRGILELSQGLFPEDASLEAKVALPAGMTLYRAA--------- 745

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT-DTIFSNGKK 368
                                               A  +   IS ++G       +G+ 
Sbjct: 746 -------------------------------EGVQEAHWVGQRISELLGGTGHWQMDGQT 774

Query: 369 RV--IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               +  +DI +LVR       +  +     +   I V    +        ++ ++    
Sbjct: 775 EPSGLAPEDIAILVR----FKALGTVLEKELHRMGIPVCVPQQEPFYQDHRVELIL---- 826

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                    +   +L       S                V+E  +K    G       + 
Sbjct: 827 --------KAASRVL-----GVSWSQ------------EVFECPEKVLAKGPLGLAAYLG 861

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +                      K G    I+    E        L+            
Sbjct: 862 DVPPFDRFFWQSRAFRELEKQYREKGGWAGLINHIRLESE------LDQA---------- 905

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                                   +V+I+T+H AKGLE   VFL      +         
Sbjct: 906 -------------------EMKSRKVKILTMHAAKGLEFEAVFLPCLEDGIVPFA----- 941

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                 + ++    +   KS + E  RL YV +TRA   L +  
Sbjct: 942 --------------------GMDFLLGKPAQAEHKSDELEERRLFYVALTRARRHLYLSL 981

Query: 667 HSNTS 671
             +  
Sbjct: 982 AGSRK 986


>gi|289769236|ref|ZP_06528614.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
 gi|289699435|gb|EFD66864.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 1165

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/560 (12%), Positives = 157/560 (28%), Gaps = 72/560 (12%)

Query: 407  NDRFILTDHLAIKDLMALGRFILSQ--EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +     D             + S     D + +  L   L +        +     E  
Sbjct: 529  GEHAYRADEPCWLSTETALTLLTSPLAGMDAADLRRLGRALRDERRAAGNPLPPPSDELL 588

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFIS 519
                   +        +    + +  L+  A+       S  +    +        +   
Sbjct: 589  AQALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGSAEEALWDLWDGTPWPTRLER 648

Query: 520  RF------GNEVIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSA 567
                    G      LD     F       E+         + E++            + 
Sbjct: 649  SARRGGAAGRNADRDLDAVCALFATAARAEERTGGRGALNFLEEIDAEDIAADTLARRAV 708

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              + VR+MT H +KGLE  +V +      ++     +   +        G+   +     
Sbjct: 709  RPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSPG-- 766

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VY 686
                          +   E  RL YV  TRA ++L++      +++     R   ++ V 
Sbjct: 767  --------------ALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGVE 812

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
             +       + + +   + +      +     P      R       + ++     + S 
Sbjct: 813  PADVTGRPRRPLAVAALVAELRATTVDPRVSEPLREAAARRLARLAALTDEDGRPLVPSA 872

Query: 747  IK----------------NDINEPYILNPSTIDT-KGKTNLESLLSDN--------QTFN 781
                               D ++P  L+ S +D       L+  L               
Sbjct: 873  HPYRWWGMWDPTESKVPLRDRDQPVTLSGSALDQLANTCALQWFLGREVKADAPATTAQG 932

Query: 782  RGLIIHKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLEN 834
             G ++H L  +V            +            +A    A+E  N  +++ R L+ 
Sbjct: 933  FGNVVHVLADEVASGHTPADLAVLMERLDSVWNALAFDAPWKSAQEKANARVALERFLKW 992

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEI 893
             +M  A      SE      +   + ++ I G++D++        ++ ++KT    P   
Sbjct: 993  HVMDRAGRTPVASEHDFDVTLEAGEYEVRIRGQMDRVETDADGRAYVVDFKTGKQAPTSS 1052

Query: 894  EHIPYTHIAQLSIYEKILKD 913
            E        QL++Y+  +++
Sbjct: 1053 EVAR---HPQLAVYQLAVRE 1069



 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 89/779 (11%), Positives = 205/779 (26%), Gaps = 80/779 (10%)

Query: 1   LKNRFGLSLNESYE----LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
           L++R  L +  +        +   + L             L + +G    +   + L   
Sbjct: 97  LRDRMALRIGAARAPRATTFHSFGYALVRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQ 156

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                       L    +      +  + T+    +   +      ++   + +      
Sbjct: 157 VD-------LERLGLAHVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLGPDALA 204

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
               +        A    A Y +      VLD+ +L+     L ++ +V+A     +  +
Sbjct: 205 AFARRIGRPDWRAAAVFLAEYLDVLDLQGVLDYAELVHRAVLLARRPEVAA----HLTAQ 260

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            + + +DE QDT   Q  ++ +L +            RTL A GD  QSIY+F GA+   
Sbjct: 261 YDAVYVDEYQDTDPAQVRLLHALAD----------GGRTLVAFGDPDQSIYAFRGADVNG 310

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L       +     G+   +  L  + RS + +L     +       +  ++       
Sbjct: 311 ILDFPTAFPR---ADGRPAPVGVLRTARRSGSGLLAATRLLTQRMPLTRLPADKVRAHRE 367

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
               R    G V+ +    +  +                                 I+++
Sbjct: 368 LTPVR--GGGRVEAYTYPTAGTELDN------------------------------IADI 395

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +    +        +  +D+ VLVR    +  I  L R L +      +  D   L    
Sbjct: 396 LRRAHLED-----GVPWRDMAVLVRA--GSRTIPTLRRALTSAGVPLDIDGDDLPLRHEP 448

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
           A+  L+   R +   E D       +        D   +          +        + 
Sbjct: 449 AVAPLLTALRAVAEAEADTGARTGERPGAVGSEADADPRADADAGGDPEIDPDADPDIDP 508

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFT-LILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                 +V +        ++    +       L  +       S         L      
Sbjct: 509 DADADAYVDEGGDAATKPSRGEHAYRADEPCWLSTETALTLLTSPLAGMDAADLRRLGRA 568

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                + + + L     EL           + +              L      L   GS
Sbjct: 569 LRDERRAAGNPLPPPSDELLAQALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGS 628

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              +   +      P+  +            +  ++ +        +  EE       G 
Sbjct: 629 AEEALWDLWDGTPWPTRLERSARRGGAAGRNADRDLDAVCALFATAARAEER-----TGG 683

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYD--MVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
             A + L      + + +  + +    D   +  +  +     ++ +   + +  W    
Sbjct: 684 RGALNFLEEIDAEDIAADTLARRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLR 743

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                 E   + R+   + L     + ++              L  + +        + 
Sbjct: 744 RRGSLLEADRIGRDGLAEPLSPGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQP 802


>gi|33322854|gb|AAQ07163.1|AF496472_1 ATP-dependent helicase PcrA [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 148

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 21/154 (13%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +       Y+   +++ +LDF+DLI+ T  L K    S        Q+  ++L+DE QD
Sbjct: 16  KVVADATRKYQAILERDQILDFDDLIMQTLTLFK---ASPDTLAYYQQKFRYLLVDEYQD 72

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+  Q+E+ R L + +            +  VGD  QSIY + GA  + +L  +   +  
Sbjct: 73  TNEAQYELCRLLADGY----------HNICVVGDADQSIYGWRGANMENILNFEHDYKN- 121

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
                     ++L  ++RST  IL   + V    
Sbjct: 122 -------AQTVKLEQNYRSTGHILKAXNSVIDHN 148


>gi|317486423|ref|ZP_07945250.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
 gi|316922333|gb|EFV43592.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6]
          Length = 1075

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 90/650 (13%), Positives = 158/650 (24%), Gaps = 149/650 (22%)

Query: 26   FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
                 I     L++        +  + L++A        +   L +  L+   T ++ + 
Sbjct: 525  LLKDGIPAQRILAVTFTRRAAAELRERLERALGEGVPLPQADTLHALALSHWGTAEEALP 584

Query: 86   TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
                 + +  +  K           R         +           L   Y  AK++  
Sbjct: 585  AVLPEETARSVFAKANALSAA-DARRAWDELSLARERLDTLTDEQSALQERYHAAKRERN 643

Query: 146  VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            + D+ DL+ +    L+      W           +L+DE+QD S +Q  ++R+L      
Sbjct: 644  LADYTDLLEHWLARLQAEPERQWTN---------VLVDEIQDLSPLQVALVRALM----- 689

Query: 206  GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                       F +GD  Q+IY F GA P      +                + L  S R
Sbjct: 690  ----PGDGHGFFGIGDPDQAIYGFRGAHPDVQSALREAWP--------SLESVTLAASHR 737

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            S A ILT    +         L                                      
Sbjct: 738  SAAGILTSASALLGPSSACGKLIPTRNMEACLHLFSAPD--------------------- 776

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR-------VIQAKDILV 378
                            A   A  +A  ++ ++G  +      +R            ++ V
Sbjct: 777  ----------------ARKEAAWVADQVALLLGGTSHTLEDSRRRDATLATPCSPGEVAV 820

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            LVR       +    +       +     +                              
Sbjct: 821  LVR----MKALIPPLKTALERRGVPCSAPETAPFWGDP---------------------S 855

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
              L   L        F         +                   V +    L       
Sbjct: 856  AALILELAGLRFQRPFAAPEGPGSLDV-----------------DVPQLAASLPEQLWQA 898

Query: 499  SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
             P    + +        + ++    E         N  LR  +    + + L+  +    
Sbjct: 899  GPSALASHL-----DAAKLLAPLFTESAAC-----NALLRAFREQGKTWEGLLDWVCLRQ 948

Query: 559  PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                    A    V+IMT+H AKGLE   VFL      +        +            
Sbjct: 949  DLDLVREQAEQ--VQIMTLHAAKGLEFRAVFLPALEEGILPFPGADALLHGDPGGAIDP- 1005

Query: 619  PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                       E  RL YVG+TRA D + +   +
Sbjct: 1006 -----------------------DALAEERRLFYVGLTRAQDAVFVSHAA 1032


>gi|256785339|ref|ZP_05523770.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 1121

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/560 (12%), Positives = 157/560 (28%), Gaps = 72/560 (12%)

Query: 407  NDRFILTDHLAIKDLMALGRFILSQ--EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +     D             + S     D + +  L   L +        +     E  
Sbjct: 485  GEHAYRADEPCWLSTETALTLLTSPLAGMDAADLRRLGRALRDERRAAGNPLPPPSDELL 544

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFIS 519
                   +        +    + +  L+  A+       S  +    +        +   
Sbjct: 545  AQALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGSAEEALWDLWDGTPWPTRLER 604

Query: 520  RF------GNEVIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSA 567
                    G      LD     F       E+         + E++            + 
Sbjct: 605  SARRGGAAGRNADRDLDAVCALFATAARAEERTGGRGALNFLEEIDAEDIAADTLARRAV 664

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              + VR+MT H +KGLE  +V +      ++     +   +        G+   +     
Sbjct: 665  RPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSPG-- 722

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VY 686
                          +   E  RL YV  TRA ++L++      +++     R   ++ V 
Sbjct: 723  --------------ALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGVE 768

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
             +       + + +   + +      +     P      R       + ++     + S 
Sbjct: 769  PADVTGRPRRPLAVAALVAELRATTVDPRVSEPLREAAARRLARLAALTDEDGRPLVPSA 828

Query: 747  IK----------------NDINEPYILNPSTIDT-KGKTNLESLLSDN--------QTFN 781
                               D ++P  L+ S +D       L+  L               
Sbjct: 829  HPYRWWGMWDPTESKVPLRDRDQPVTLSGSALDQLANTCALQWFLGREVKADAPATTAQG 888

Query: 782  RGLIIHKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLEN 834
             G ++H L  +V            +            +A    A+E  N  +++ R L+ 
Sbjct: 889  FGNVVHVLADEVASGHTPADLAVLMERLDSVWNALAFDAPWKSAQEKANARVALERFLKW 948

Query: 835  PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEI 893
             +M  A      SE      +   + ++ I G++D++        ++ ++KT    P   
Sbjct: 949  HVMDRAGRTPVASEHDFDVTLEAGEYEVRIRGQMDRVETDADGRAYVVDFKTGKQAPTSS 1008

Query: 894  EHIPYTHIAQLSIYEKILKD 913
            E        QL++Y+  +++
Sbjct: 1009 EVAR---HPQLAVYQLAVRE 1025



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 89/779 (11%), Positives = 205/779 (26%), Gaps = 80/779 (10%)

Query: 1   LKNRFGLSLNESYE----LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
           L++R  L +  +        +   + L             L + +G    +   + L   
Sbjct: 53  LRDRMALRIGAARAPRATTFHSFGYALVRAHQDSDLFVEPLRLLSGPEQDVTVRELLAGQ 112

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                       L    +      +  + T+    +   +      ++   + +      
Sbjct: 113 VD-------LERLGLAHVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLGPDALA 160

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
               +        A    A Y +      VLD+ +L+     L ++ +V+A     +  +
Sbjct: 161 AFARRIGRPDWRAAAVFLAEYLDVLDLQGVLDYAELVHRAVLLARRPEVAA----HLTAQ 216

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            + + +DE QDT   Q  ++ +L +            RTL A GD  QSIY+F GA+   
Sbjct: 217 YDAVYVDEYQDTDPAQVRLLHALAD----------GGRTLVAFGDPDQSIYAFRGADVNG 266

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L       +     G+   +  L  + RS + +L     +       +  ++       
Sbjct: 267 ILDFPTAFPR---ADGRPAPVGVLRTARRSGSGLLAATRLLTQRMPLTRLPADKVRAHRE 323

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
               R    G V+ +    +  +                                 I+++
Sbjct: 324 LTPVR--GGGRVEAYTYPTAGTELDN------------------------------IADI 351

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +    +        +  +D+ VLVR    +  I  L R L +      +  D   L    
Sbjct: 352 LRRAHLED-----GVPWRDMAVLVRA--GSRTIPTLRRALTSAGVPLDIDGDDLPLRHEP 404

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
           A+  L+   R +   E D       +        D   +          +        + 
Sbjct: 405 AVAPLLTALRAVAEAEADTGARTGERPGAVGSEADADPRADADAGGDPEIDPDADPDIDP 464

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFT-LILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
                 +V +        ++    +       L  +       S         L      
Sbjct: 465 DADADAYVDEGGDAATKPSRGEHAYRADEPCWLSTETALTLLTSPLAGMDAADLRRLGRA 524

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                + + + L     EL           + +              L      L   GS
Sbjct: 525 LRDERRAAGNPLPPPSDELLAQALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGS 584

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              +   +      P+  +            +  ++ +        +  EE       G 
Sbjct: 585 AEEALWDLWDGTPWPTRLERSARRGGAAGRNADRDLDAVCALFATAARAEER-----TGG 639

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYD--MVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
             A + L      + + +  + +    D   +  +  +     ++ +   + +  W    
Sbjct: 640 RGALNFLEEIDAEDIAADTLARRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLR 699

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                 E   + R+   + L     + ++              L  + +        + 
Sbjct: 700 RRGSLLEADRIGRDGLAEPLSPGALLAEERRLFYVAATRARERLVVTAVKAPADDGDQP 758


>gi|300857960|ref|YP_003782943.1| hypothetical protein cpfrc_00542 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685414|gb|ADK28336.1| hypothetical protein cpfrc_00542 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205689|gb|ADL10031.1| Putative ATP-dependent DNA helicase [Corynebacterium
           pseudotuberculosis C231]
 gi|302330241|gb|ADL20435.1| Putative ATP-dependent DNA helicase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275924|gb|ADO25823.1| Putative ATP-dependent DNA helicase [Corynebacterium
           pseudotuberculosis I19]
          Length = 1062

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 84/651 (12%), Positives = 170/651 (26%), Gaps = 114/651 (17%)

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                +A  I                 +   DI V+VR       +    R       + 
Sbjct: 350 QHFEYVADKIRR---------AHLIDGVPWDDIAVIVRSTG----LIAPIRRALLAAGVP 396

Query: 404 VVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---- 458
           V       IL++   +  ++   R I  + ++     +L  P+       + ++      
Sbjct: 397 VQVDPTDIILSEQRIVASMILAVRAIHGELNNRELEDLLLGPIGGADSVTLRRLYRGLRK 456

Query: 459 -----------------------QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                                     + + + E  +  +   +   +   + +   +  A
Sbjct: 457 VEMSRGGSRRAIELLKILISPRPSEEQNDLIGEAEEVLSERELQILERTRRVL---LRGA 513

Query: 496 QFCSPHDFFTLILGAKKGRQQFIS------RFGNEVIDVLDE---FLNFTLRN-EQNSYS 545
           Q  S  +    I           +        G++    LD      +      E+   +
Sbjct: 514 QPGSVEEVLWAIWHETGLANHLQAVSLRGGAAGSQADRDLDAAMALFDAAGDWVERRPTA 573

Query: 546 SLQELISELEQYPPTIKRAH--SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            +   +  + +                 V+++T H A G +   V +       +     
Sbjct: 574 GIVSFMRHIAEQELPTGVRDRRQIRTQAVQLLTAHAALGQQWHTVIVAGVQEGSWPSLGE 633

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                      D             + I  + I    K   +E  RL +V  +RA+ +L 
Sbjct: 634 TGTLFGQEELTDL----------IDSGIEPNTIVMRSKDRLDEERRLFHVAKSRATHRLY 683

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI------------- 710
           I    + ++   +    + + +  SF   +  +       ++                  
Sbjct: 684 ITAVEDPASNDVAEPSRFIEELDPSFFQQQSQENEASYADLSVPLAPKDTGLEDYIRLLS 743

Query: 711 ---------------AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                                       L R  +        +       P  +   +  
Sbjct: 744 VPAMVAELRREVRNSDSPQRRRDQAARQLARLASAGVPGAHPEEWWGEGGPSTDQPLQQR 803

Query: 756 ILNPSTIDTKGKTNLESLL-------SDNQTFNRGLIIHKLLQVIFT-----LPEHKRKN 803
            ++PS I+      L + L              +G + H   + I         +     
Sbjct: 804 SISPSLIEQGLTCPLRARLDAVIEGEETPFQMLKGSLAHAYAEAIARGVESETAKELTTE 863

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                    A      E    +  I RL E   ++ A       E SV+ KI    + I 
Sbjct: 864 AFLRLLNAPA-WQQETEKAAWIRMIERLEEWITVSAARYELVGVETSVNTKIA---EGIT 919

Query: 864 ISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           I GRID+I  +Q   + I +YKT        E   +    QL  Y+  L  
Sbjct: 920 IRGRIDRIERTQDGAYRIIDYKTGTRGLSAKEVADHK---QLMAYQLALSK 967


>gi|145294938|ref|YP_001137759.1| hypothetical protein cgR_0884 [Corynebacterium glutamicum R]
 gi|140844858|dbj|BAF53857.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1016

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/608 (11%), Positives = 176/608 (28%), Gaps = 78/608 (12%)

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL-GRFILS 430
              +I V+VR       +    R       + V  +   ++     I   M L  R +  
Sbjct: 338 SWSEIAVIVRS----AGMIAPIRRTLLAAGVPVHISPTDVVLAEQRIVAAMILGLRALTE 393

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------------------TETVYEYIQ 471
             + +    +L  P+       + ++     +                    E+  E + 
Sbjct: 394 SLNAIELEDLLLGPIGGADPVTLRRLLRGLRQAEMKMGGQRRAIEVLRSLLEESDAEMLG 453

Query: 472 KFANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFIS------RFGNE 524
              +  ++  + V   +      +A+  S  +    +  A        +        G++
Sbjct: 454 FLTDRELNLLERVRSVLEAGREALAEHGSIEEVLWALWSATDLSNSLSAISLRGGASGSQ 513

Query: 525 VIDVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVH 578
               LD      +      E+   + ++  I  + +                 V ++T H
Sbjct: 514 ADRDLDAMMALFDAAGDYVERYPSAGVRSFILHISEQELPTGMRERRGAIPEAVEVLTAH 573

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
              G E   V + +     +         +      D               I  D+I  
Sbjct: 574 ATTGREWKRVIVAEVQEGSWPSLGETGTLLGQEEFVDL----------MDEGIDPDIIIS 623

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                  E  RL Y+  TR+++ L++   ++  +++      + +++       E  +  
Sbjct: 624 RSAERLAEERRLFYLATTRSTESLLVTAVNSPDSDEVREPSRFLELLSQPIVVLEGEEAS 683

Query: 699 KLTNSIN--------KDEWIAYEWSTHHPENTPLEREETIKQLMDE-------QKIPKKL 743
            +                        + P +   ++       + E             L
Sbjct: 684 AIAEPEEIGHRLLSIPAMVAELRRVVNDPRDPRRKQAARQLSRLAEAGIPGANPAEWTNL 743

Query: 744 FSPIKNDI--NEPYILNPSTIDTKGKTNLESLLSDNQ-------TFNRGLIIHKLLQVIF 794
            +P  ++        L+PS I+      L ++L              +G ++H   + + 
Sbjct: 744 RTPSTDEELIKGAVSLSPSRIEQLLNCPLRAVLDRLDSEEETPIAMLKGTLVHAFAEAVA 803

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
              +        +         P+   ++  ++  R+L         S   ++EV     
Sbjct: 804 GGVDAALAEEKVTSAYMQLANVPSWSRESTEIAFRRILSRTDTWLKTSRADFTEVGTEMD 863

Query: 855 INCPKKD-IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           ++    D + I GR+D++  ++   + + ++KT      +I         QL  Y+  L 
Sbjct: 864 VSVTIDDSVSIRGRMDRLERNKSGELVVVDFKTGKT---QIAAKDMGDHPQLFAYQLALS 920

Query: 913 D--SYPNK 918
               + +K
Sbjct: 921 KGVLHGDK 928


>gi|302558545|ref|ZP_07310887.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302476163|gb|EFL39256.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 496

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/418 (15%), Positives = 132/418 (31%), Gaps = 55/418 (13%)

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           F       E+         + E+E            +A H+ VR+MT H +KGLE  +V 
Sbjct: 5   FATAARAEERTGGRGALNFLEEIEAEDIAADTLTRRAARHDAVRLMTAHRSKGLEWRLVV 64

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +      ++     +   +        G+   +                   +   E  R
Sbjct: 65  VAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPG----------------ALLAEERR 108

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM----------VYDSFHNDERVKKIK 699
           L YV  TRA ++L++      +++     R   ++                    V +++
Sbjct: 109 LFYVAATRARERLVVTAVQAPADDGDQPSRFLTELGVEPKDVTGRPRRPLSVAALVAELR 168

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL-------FSPIKNDIN 752
            T    +      E +           +E  + L+      +               D +
Sbjct: 169 ATTVDPRVSDTLREAAAQRLARLAALADEDGRPLVPSAHPYRWWGMFEPTRSRVPLRDRD 228

Query: 753 EPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRGLIIHKLL-QVIFTLPEHKRK 802
           +P +L+ S +D       L+  L                G ++H L  +V          
Sbjct: 229 QPVVLSGSALDQLANTCALQWFLGREVKADAPATAAQGFGNVVHVLADEVASGHTPADLD 288

Query: 803 NFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
             +            +A    A+E +N  +++ R L+  +M         SE      + 
Sbjct: 289 VLMERLDSVWNALAFDAPWKSAQEKENARVALERFLKWHVMDRTGRTPVASEHDFDVTLG 348

Query: 857 CPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
               ++ I G++D++        ++ ++KT    P   E     H  QL++Y+  +++
Sbjct: 349 AGDYEVRIRGQMDRVETDGDGRAYVVDFKTGKQAPSSAEV---EHHPQLAVYQLAVRE 403


>gi|331016621|gb|EGH96677.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 1104

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 115/704 (16%), Positives = 216/704 (30%), Gaps = 110/704 (15%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMET------GNPTILKKAQTLQQASQTQC 61
           + +E  E +     P      +       L               +  A  L +  Q   
Sbjct: 251 AAHELVERMRASAIPGASDVWAGTFHAFGLEFLRKYHDLFQLKADVGMADRLTKVRQMVR 310

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
           +    SL     L   +             K  D  ++LK+        R R        
Sbjct: 311 LLPTISLQYYVRLQDPYEW---------LPKVLDYVDRLKEELVSVTDYRARLAALPAPT 361

Query: 122 STLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             +A        +   YE   +   ++D+ DL+      L+ R   A +   ID   +HI
Sbjct: 362 PDVAQQQADIAVVYEAYEAELRAKQLVDYTDLVALPT--LQARKDRASVSQYIDH-FDHI 418

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QD + +  E IR L            + ++++ VGD +Q+I+ + GA  + +++ 
Sbjct: 419 LVDEYQDVTHVMVEFIRELA----------VNAKSVWVVGDVRQAIHHWRGASIQSLMKF 468

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
               ++ A +     +   L ++ RST +IL    K+FS         +         + 
Sbjct: 469 DSAFRRNAPH--ASVATYNLDINRRSTPEIL----KLFSH-TGRDHKLQIRLPLQPVNAH 521

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
           R        L+                          + +S    A+ +A  I  +    
Sbjct: 522 RASIDANPILF--------------------------ECTSIDSQAQTLANVIGKL---- 551

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     +  +D +++ R   +                I  +      +     IK 
Sbjct: 552 ------STMGVNYRDQVIISRSTANIERTAEDLSA----RGIPYLYIG--DVHQRTEIKR 599

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           L+ L + + +     S V +L  P    S  D+  +         V     K+       
Sbjct: 600 LICLMQLLCT-RQPRSLVGLLHEPNLALSIADMKLLMDSTSPGTGVGLQRGKWIGTQGLG 658

Query: 481 FQ-----HVIKYIHELIHIAQFCSPHDFF-TLILGAKKGRQQFISRFGNEVID--VLDEF 532
                    ++    L    +  +P DF  TL+L  + G         N   +   L  F
Sbjct: 659 LSVAGEIARVELAKLLAGFDRHTNPWDFVCTLLLDRRFGLPNPADTSMNAHTERLALWLF 718

Query: 533 LNFTLRNEQNSYS---SLQELISELEQYPPTIKRAHSANH-----NEVRIMTVHTAKGLE 584
           +     N+ N+     S   L  +L +                  N + +MTVH +KGLE
Sbjct: 719 VYAVRNNDGNTKEARLSPFLLREDLRRRINEKLADRGVPPEARALNAITLMTVHGSKGLE 778

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V + D     +  +         +L                  +++           
Sbjct: 779 FNAVHVTDVDKAAYGAEQAWDYDPRSTLLI-------------PPEVLNSTQAEHNFKEA 825

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            E N LLYV ++RA D+L +  +     ++ S+      ++   
Sbjct: 826 VERNNLLYVALSRARDRLFL--YETNPKDRPSSLSRAGSLLERY 867


>gi|269123275|ref|YP_003305852.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
 gi|268314601|gb|ACZ00975.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112]
          Length = 981

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 124/906 (13%), Positives = 282/906 (31%), Gaps = 174/906 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQ---KFTPQKNIITQ------------EI 89
             LK     ++A       +   +L    L     +++  K ++ +            + 
Sbjct: 211 NDLKIEYNGEEAKLKADSIKILEILEKINLNNMEIEYSNLKPLLNKMYKMQNVFNTRSKK 270

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           ++    L EK  +   +    +     Y+  K T   L   K +       KK N +LDF
Sbjct: 271 SEVVKYLFEKNYELTKKIQDFQLIRYNYESTKKTNELLKNHKIVFDEDFRLKKANKLLDF 330

Query: 150 EDLIINTND--------LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            D+   T          L+K   V+ +    +D +I+ +++DE QDTS++Q++ I+ + +
Sbjct: 331 NDITYYTFKYMFDEKLGLVKDGKVTDYFYELMDGKIDALMVDEFQDTSVLQFKFIKLIMD 390

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                       + +  VGDEKQSIY + G         K++ +      G++  I  L 
Sbjct: 391 ----------GAKIVTCVGDEKQSIYEWRGGY-------KKLFEDLDKALGEETVIKTLC 433

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             +RS  +I++ ++ +F+   N +             S    + G V+         D  
Sbjct: 434 TCYRSEKNIISFINNIFTKLPNYR-------YDEVKSSKEEKKSGYVETILVEKKSKDDD 486

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              ++       +     +                                     +L+R
Sbjct: 487 DIIKKIVEKIKENKDFTNT------------------------------------AILLR 510

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                  I        +D  I      +  + +  ++K    L +++++ +++++    L
Sbjct: 511 DNNKLEKIAKYL----DDENIRYSLMTKSSILNVPSVKTAHKLVKYLVT-KNEVNKYEFL 565

Query: 442 KSPLFNFSEDDIFKICTQR-HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           +S +  +S D++  +   +  E    +E                        H +     
Sbjct: 566 RSDIKKYSLDEVSDVIQGKIDEDIKYFEDNFD-------------------RHNSFNSDD 606

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
            DF    +              ++  D   L+ +            S++ +    +E   
Sbjct: 607 FDFAKEYIERFGY------SLNDDSNDILNLNFYFEKMKEF-----SNIYDFYENIE--G 653

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
             I +      + + + T+H +KGLE   V++       F          +   ++   I
Sbjct: 654 NKILKKSIVEKDGITLSTIHASKGLEYKNVYI---YDDSFDDVKTGLKKYVAYDDEYNII 710

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
              +      N ++ ++    K +  E+ N +        +    +       N+ +S+ 
Sbjct: 711 KFRMCNYNILNKMIKEINDDDKLNDFEKDNLMNNFKEFENAYDEYMTI-----NKSESDA 765

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
               + V  +   +       +   + ++E I    +  +              ++ E  
Sbjct: 766 YLNLNYVAYTRAKENCYIFYGMPGPLIREEKILGTRNMSN-------------AMIKEDN 812

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
           +   L        ++   ++    D +     +           G  IH   +V      
Sbjct: 813 VLDYLKYANYFKQSKYVEVDSEKYDVERINRQKE----------GSAIHYFFEVY-NGDV 861

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD--SYSEVSVSGKIN 856
               + +             +    L+               +      YSE  +    +
Sbjct: 862 EIAIDIVKKKYGNLLSGLSFERVLYLIDK-----NVERYKNILESKNTRYSEFKI---FD 913

Query: 857 CPKKDIIISGRIDQISISQQ--NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
               D +    ID + I +     +I+++KT H+V          +I QL  Y+KIL  +
Sbjct: 914 KDDNDKM--YIIDLLLIDKDKKRAYIYDFKTGHNVINNP-----KYIKQLEKYKKILSKT 966

Query: 915 YPNKSL 920
             +  +
Sbjct: 967 ITDYEI 972


>gi|94152721|ref|YP_582123.1| UvrD/REP helicase [Cupriavidus metallidurans CH34]
 gi|93359087|gb|ABF13173.1| Superfamily I DNA and RNA helicase (plasmid backbone) [Cupriavidus
           metallidurans CH34]
          Length = 579

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 78/621 (12%), Positives = 162/621 (26%), Gaps = 151/621 (24%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD---EFIKIRDRFNTYKMFKS 122
           F  L+   L +      +I+T  +      +  ++ + +    +           K    
Sbjct: 87  FHSLAYKQLGKNGGKLNDIVTDGVRAA---IVGQILQERGIDWKVEDALASIERSKHHLD 143

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHIL 181
                T+   +   Y+ A  +N  +DF+D++      +L        +         H+L
Sbjct: 144 DPKPGTVDAQIFEAYQAALSRNGKIDFQDMLRMAVAGMLTGGIRPYSVH--------HLL 195

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD   +Q                   +   +  VGD+ Q+I+ F  A      +  
Sbjct: 196 VDEYQDCDSLQSRWTSLHAA----------AGSVVCVVGDDDQTIFGFRDA---LGYQGM 242

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               K           I L  ++RS ++IL+  DK+                      + 
Sbjct: 243 EAFIKEF-----DARAIVLGKNYRSHSEILSAADKIIRNNAQRISKDL---------LAH 288

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
            G  G+V+         +                          A  +  T++  I    
Sbjct: 289 RGSGGSVEFKRFDDEYKE--------------------------AVAVVETLAPAIRAGK 322

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                           VL R  +    I  + R     + +         + D      +
Sbjct: 323 TA-------------AVLARTNRILDPIEAVCRS----HGVKYYRAAGKSILDRPEAALM 365

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK-------FA 474
             +   I   +       +  S        ++ ++  Q      +    +K        +
Sbjct: 366 GDMLELIQRAKLTGVDALLGYS---GIGTLELQQLHAQEAAEGELISAPRKKDLVESGIS 422

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFL 533
                K++  +K + E   +             L     R+  +     +     ++   
Sbjct: 423 EETAEKYRDFLKRLAEWRALYDREF------HALTLDGVREWMLKYVTEDAGKRAINTCY 476

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           +   +      + L+ L              +    + + + T+H +KG E   V +V  
Sbjct: 477 DVLSQLNGPFVARLEYLRRR----------NNEPAADALVLTTMHASKGREWDSVAIVRA 526

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +                                              + E  RL YV
Sbjct: 527 EETIVPDSESP---------------------------------------ESEERRLFYV 547

Query: 654 GMTRASDQLIICKHSNTSNEK 674
            +TRA D L I         +
Sbjct: 548 AVTRARDCLFISTAKKNPTSR 568


>gi|324999584|ref|ZP_08120696.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1]
          Length = 663

 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 123/407 (30%), Gaps = 74/407 (18%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQ----ASQTQCIEERFSLLSSFFLTQKFTP 80
                ++   +      G       A  L+Q      Q         L   F L  +   
Sbjct: 38  ARAAGELRTRLRQLDAGGVQARTFHAAALRQLRYFWPQVIGGSPWPLLDGKFRLVGQAAA 97

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEE 139
           +  + T        DL  +++ ++   +   D      +  + T         + A YEE
Sbjct: 98  RARVGTDS--DALRDLSSEIEWAKSSLVAPVDYAAEAARRKRDTPGPADQVAQVYAAYEE 155

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K    VLDF+DL+++T   L++    A +  +        ++DE QD + +Q  ++ + 
Sbjct: 156 LKNAAEVLDFDDLLLHTAVALEEH---AGVAEEFRSRYRCFVVDEYQDVTPLQQRLLDAW 212

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             +             L  VGD  Q+IY+F GA P+ +L   R             +++ 
Sbjct: 213 LGE----------RDDLTVVGDANQTIYTFAGASPRYLLEFPRRFP--------GAAVVR 254

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L   +RST  I+   +++     +                        +QL  Q+    D
Sbjct: 255 LQRDYRSTPQIVGCANQLIGAARHRP------------------AGSRLQLVGQLPPGPD 296

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                             +       A  +A  I  ++   T          +  +I VL
Sbjct: 297 PDF--------------SEHDDEPAEAAAVAGRILTLLKDGT----------EPSEIAVL 332

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            R    +           +D  +               ++  M   R
Sbjct: 333 FRINAQSEAYEQAL----SDAGVPYQVRGGERFFARPEVRRAMIALR 375



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 70/275 (25%), Gaps = 43/275 (15%)

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
           LF  +                      +         + +I                D  
Sbjct: 332 LFRINAQSEAYEQALSDAGVPYQVRGGERFFARPEVRRAMIALRGAAPDQRPGTDLVDVT 391

Query: 505 TLILGAKKGRQQFISRFGNEV--IDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTI 561
             +LGA+ G      +        + L   +            + L  L +EL+    + 
Sbjct: 392 RAVLGARAGLTDEPPKGATLRAQWESLLALVGVAEELAAIEPQADLTRLCAELDTRADSA 451

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           +         V + ++H AKGLE   VFLV          H                   
Sbjct: 452 QAPVVQG---VTLASLHAAKGLEWDAVFLVGLADGTLPIGHAGD---------------- 492

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---SNTSNEKKSNQ 678
                              +   EE  RL YVG+TRA   L +      ++    K+   
Sbjct: 493 ------------------DEHAVEEERRLFYVGVTRARRVLSMSWSLSRASGRGPKRRRS 534

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
           R  Y ++ DS        + +   +  K       
Sbjct: 535 RFLYGLIPDSHPASRVAGERRPGAARPKCRVCGSP 569


>gi|229490963|ref|ZP_04384796.1| ATP-dependent DNA helicase [Rhodococcus erythropolis SK121]
 gi|229322079|gb|EEN87867.1| ATP-dependent DNA helicase [Rhodococcus erythropolis SK121]
          Length = 712

 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 95/666 (14%), Positives = 185/666 (27%), Gaps = 164/666 (24%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A    +    Q + +    L         +    +      +   DL  +++ 
Sbjct: 89  ARTFHAAALRQLKYFWPQVVGDTPWRLLDRKFAVVSSAAARVGLSTSTESVRDLASEIEW 148

Query: 103 SQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII------- 154
           S+   I   D      K+ +      T    + A YEE K +      + +++       
Sbjct: 149 SKASLIAPEDYPRAIAKIRREAPVDATKVAQVYAAYEELKARGQ----DGMLLDFDDLLL 204

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
           +T   L++    + +  +  +     ++DE QD + +Q  V+ +   D            
Sbjct: 205 HTAAALEEH---STVADEFRERYRCFVVDEYQDVTPLQQRVLDAWLGD----------RD 251

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            L  VGD  Q+IYSF GA P  +L   R   +         +++ L   +RST +++++ 
Sbjct: 252 DLTVVGDANQTIYSFTGATPNYLLDFSRKFPE--------ATVVRLERDYRSTPEVVSLA 303

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           ++V             + T ++    R                                 
Sbjct: 304 NRVIGAARGR-----IAGTRLQLIGQRAPGPEP--------------------------- 331

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
              +       A  +A  I  +I   T           A +I VL R    +        
Sbjct: 332 EFMEFDDEPAEALGVARAIKRLIAAGTP----------AAEIAVLYRINAQSEAHEQALT 381

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            L     I               ++  +A  R    ++D          P    + + + 
Sbjct: 382 KL----GIPFQVRGGEGFFTRTEVRQAVAALRQAAGRDD---------LPEGADNGEALV 428

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
            +         +            ++ +     +  L+ + +    H+     L      
Sbjct: 429 SLVRA-----VLAPLGLTNEEPSGTQARERWASLSALVALTEEQLVHEPE---LTLTGLL 480

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           Q+  +R                   E     ++Q                       V +
Sbjct: 481 QELTAR------------------AEARHPPTVQG----------------------VTL 500

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            ++H AKGLE   VFLV         +H+                              D
Sbjct: 501 ASLHAAKGLEWDAVFLVGLNDGTLPIQHVLG----------------------------D 532

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                     EE  RLLYVG+TRA + L +      +   + ++R    +      +   
Sbjct: 533 ANSGADDVAVEEERRLLYVGVTRAREHLQLSWALARNEGGRKSRRRSRFLNGLIPEDSPA 592

Query: 695 VKKIKL 700
            +    
Sbjct: 593 SRVAAP 598


>gi|258651813|ref|YP_003200969.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
 gi|258555038|gb|ACV77980.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233]
          Length = 685

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 77/611 (12%), Positives = 160/611 (26%), Gaps = 160/611 (26%)

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAHYEEAKKKNCVLDFEDL 152
            DL  +++ S+                             + A YE AK++   LDF+DL
Sbjct: 132 RDLAGEIEWSKATLAGPEQYLAAVAKAGRDTPLPAETVAKVFAGYERAKQEAEQLDFDDL 191

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           +++T  +L+       +  +        ++DE QD + +Q   + +              
Sbjct: 192 LLHTCAVLEDD---RDVAAEFRSRYRSFVVDEYQDVTPLQQRTLDAWLGGRDA------- 241

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
              +  VGD  Q+IYSF GA P+ +L  ++              ++ L   +RST  ++ 
Sbjct: 242 ---VTVVGDANQTIYSFAGATPRYLLGFEKRYPN--------AEVVRLERDYRSTPQVVG 290

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
           + ++V +    A      +   ++  +                            +  + 
Sbjct: 291 LANRVIAGASGA-----TTRYRLKLTAVLPDGPAATFDEHPDEPTEARAVAAACAALIAD 345

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                +                                     I VL R    +      
Sbjct: 346 GTPPSE-------------------------------------IAVLYRMNAQSEGYEDA 368

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                    +  V            ++  + + R       + S   +  SP        
Sbjct: 369 LTA----AGVPYVIRGGQRFFARPEVRQAIGVLRTAA----EASGADVTDSPGPGLVLA- 419

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                      + +               +     +  ++ +A+  +  D          
Sbjct: 420 ---------VRQLLVPVGLTDEPPAPGALRDRWDSLLAVVSLAEELAAAD---------- 460

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
                                           + + EL+ EL+Q         +     V
Sbjct: 461 ------------------------------PEAGVPELVRELDQRAEAQHAPSALG---V 487

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            + ++H AKGLE   VFLV         +H +    +                       
Sbjct: 488 TLASLHAAKGLEWDAVFLVGLTDGTLPIQHAETPEEIEEE-------------------- 527

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                           RLLYVG+TRA  +L +    + +   +  +R    +   +  + 
Sbjct: 528 ---------------RRLLYVGVTRARTRLAVSWALSRTEGGRRTRRRSRFLTGIAPDSA 572

Query: 693 ERVKKIKLTNS 703
              +  +    
Sbjct: 573 RPDRTGRAPGR 583


>gi|121998487|ref|YP_001003274.1| UvrD/REP helicase [Halorhodospira halophila SL1]
 gi|121589892|gb|ABM62472.1| UvrD/REP helicase [Halorhodospira halophila SL1]
          Length = 695

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 92/690 (13%), Positives = 186/690 (26%), Gaps = 129/690 (18%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T       L Q  + + +  R  L S+ ++ +K          E   ++  ++++   + 
Sbjct: 83  TFHSAGYRLLQRLEAEGVVPRRRLESADWVARKLARTALEAALENRDEAEAVEDEAVDAF 142

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYL-------NAHYEEAKKKNCVLDFEDLIINTN 157
             F+ +              A   L   L          +E  +    V    DLI    
Sbjct: 143 LAFVDVVKADTREAAVIHAEAPRLLGAALPGHYLEAFRRFEALRDDQNVRLLNDLIHEPV 202

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
             L   D    +  +     +H++IDE QD +  Q ++IR +  D             + 
Sbjct: 203 QALLADDA---LARRFRNHFDHVIIDEYQDVNEAQQQLIRCIAGDRAA----------VM 249

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD  Q +Y + GA P+ ++R       R        +   LP +FR    +  + +  
Sbjct: 250 VVGDPDQCVYQWRGARPEYIVR-------RFDEDFPGAASYTLPHTFRFGHAVALLGNHT 302

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                   G    +         R       +L+ +++++H +                 
Sbjct: 303 VVRNRQRDGKLCLAAPRNPATEVRRCTDSDPELYRRILAEHRATGG-------------- 348

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                                             +  D+ VLVR       +        
Sbjct: 349 ----------------------------------RLSDVAVLVRLYSLAAPLELE----L 370

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGR----FILSQEDDLSFVCMLKSPLFNFSEDDI 453
            +  + +    R  L     ++ L+   R     +     D +    L + +       +
Sbjct: 371 LEAGVPLRLEGRAGLFQRREVRALLGYLRHAAGLLRDPLPDGAGPAELLTEMLMLPVAGL 430

Query: 454 FKICTQRHETE----------TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            +   Q               ++    +        + +  +  +  L          D 
Sbjct: 431 RRPEAQAVAQGYADARLPLIRSLSRAAEDLPRWKGRRLRQRVASLECLGAFHGDDPVADV 490

Query: 504 FTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTI 561
              I+      +   S     E        ++   R   +    L E +    E    + 
Sbjct: 491 LDEIVSELSLYEAIASGSPSAEAATDRSMMVDALRRFAASGGWGLTEFLERCDELIARSA 550

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           +   +     VR+ ++H AKGLE PVV +       F +                     
Sbjct: 551 QWQDAPPEQAVRVTSIHRAKGLEWPVVIVPGLAEGTFPYGVG------------------ 592

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                               +  E   RL YV +TRA  +L +    +   E+       
Sbjct: 593 ----------------EATAADLEAERRLFYVAVTRAQHRLYLVHPQDPRLERALRGGRA 636

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
                        + + +  +SI     + 
Sbjct: 637 EQFDPHRAVASRFLAEAQPEHSIAAGAALH 666


>gi|296130306|ref|YP_003637556.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
 gi|296022121|gb|ADG75357.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109]
          Length = 670

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 89/743 (11%), Positives = 181/743 (24%), Gaps = 167/743 (22%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A         + +      L     T      + +          DL  +++ 
Sbjct: 84  ARTFHAAALRQLGHFWPRVVGGAPPRLVEAKATLVAEAGRRVGVSVDRVSVRDLAAEIEW 143

Query: 103 SQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           ++   +   D        +    +         L   YE+ K +  V+DFED+++     
Sbjct: 144 AKVSLVTAEDYERAAAAVRRPTPAGQDAQAVARLLTAYEDVKTERGVIDFEDVLLLLAA- 202

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
                    +  ++  +  H ++DE QD S +Q  ++                   +  V
Sbjct: 203 --MLAQRGEVADEVRAQYRHFVVDEYQDVSPLQQYLLEQWLG----------GRHDVCVV 250

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF GA P  +L     + +          ++ L   +RST  ++ + ++V  
Sbjct: 251 GDPSQTIYSFAGASPHHLLTFTTRHPR--------AQVVRLVRDYRSTPQVVGLANRVL- 301

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                            H + R G    + L  Q       +     +          + 
Sbjct: 302 -----------------HATRRPGDPAPLHLVAQQPDGPQVRFTAYDDDDAEAAGIAARA 344

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
           +                              + A +I VL R    +             
Sbjct: 345 ARLVA------------------------AGVPASEIAVLYRTNVQSEAFEQALAA---- 376

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +               ++D + L R                         D      Q
Sbjct: 377 AGVGYQVRGGERFFARRDVRDALVLLR-------------------GGARSADPDVPLGQ 417

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                                 +     +  L+ +A                       +
Sbjct: 418 TVRDILTSVGWAPQPPAARGAARERWDAMQALVGLADDL------------------VAA 459

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           R G  + D++ E  +                              H+   + V + ++H 
Sbjct: 460 RGGATLTDLVAELDDRASA-------------------------QHAPTVDGVTLASLHA 494

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFL      +                                     +    
Sbjct: 495 AKGLEWDAVFLAGLSDGLLP-----------------------------------ISLAQ 519

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            ++   E  RLLYVG+TRA   L +   +  +   ++ +     +       +     ++
Sbjct: 520 TEAAVAEERRLLYVGVTRARRHLELSYAAARTPGSRAARARSRFLTGLWPGEEGGRGAVR 579

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
             ++      +                           +           D+     L P
Sbjct: 580 RGSAPADPAVLERLRQWRARVADERGVAAFRVLPDVALEAVAAAMPTQPADLRYVQGLGP 639

Query: 760 STIDTKGKTNLESLLSDNQTFNR 782
           + +   G   L  +  +    +R
Sbjct: 640 TRLREYGDDLLRVVADEGAPGSR 662


>gi|306822220|ref|ZP_07455602.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679]
 gi|309802289|ref|ZP_07696397.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
 gi|304554602|gb|EFM42507.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679]
 gi|308221172|gb|EFO77476.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
          Length = 1346

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/446 (13%), Positives = 139/446 (31%), Gaps = 42/446 (9%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
                 +     +  N      +     +  +  + ++   +    +   +L        
Sbjct: 151 LASFGTIAGRVFALSNAISGAMIGGDCTSFDEAVERVRAWDEAFVAQVAKALEDEEIPAD 210

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              P+     ++ + +  + ++   + Q   + +        + +     L L       
Sbjct: 211 IKAPKPLKRKKKESDEDFEARKHQYREQCHALCVYKVSQLSDVTRQRDLLLHLVAD---- 266

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y   K+   + +F D  I    L+ +      I     +  +H+L+DE QDTS  Q  ++
Sbjct: 267 YNAEKRARNMAEFSDFTIAAFQLVTRFPS---IGATYRKRYSHVLLDEYQDTSTTQAALL 323

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            SL       ++  +      AVGD  QSIY++ GA P      +R          +   
Sbjct: 324 ASLFHVDSARRSAVN------AVGDPFQSIYAWRGASPGAFRMLQRDF-----GMSETDK 372

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L ++ R++  +L   + +              T  +R    R+      ++    +S
Sbjct: 373 PFALSVTRRNSRMVLEAANNL--------------TKPLRLPVRRLSSSLMREVDVPALS 418

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
             D+                  ++        IA      + T +  +           +
Sbjct: 419 NIDTAPEGTLGVLGFATFGQEIDAVVRFAKHAIA------LHTPSDAALAGGVKDNRPHV 472

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VL R ++  P      +       ++ +   +  L +   ++D+ AL   I    D  S
Sbjct: 473 AVLFRSKQSMPKYEDALK----QAGLTTLVVGQAALLERPEVQDIFALLHVICDHTDSGS 528

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHE 462
            + +L +P F     D+  +      
Sbjct: 529 LMRLLATPRFGVGAADLQALAAIAEN 554



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 109/369 (29%), Gaps = 42/369 (11%)

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
             G  +        + +V D      +    E   L +               ++      
Sbjct: 982  DGYFVGEHARDYEDAVVGDAWNAPLEPA-AEQRNLPWPCGLSDRLATTFAASADQVRSAM 1040

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  YD        D+    +  +  +     +  E       ++  + + T++   +
Sbjct: 1041 QALSGAYDGHDGDQSADDMTMPVDESLLLRARLLVGDEHLMPDTGDSATDFDATVRVRGE 1100

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                  +                 S+   +G       ++       G  +H   +    
Sbjct: 1101 RILAGGRQNVTSLQARAGVMDDRSSSEYWRGLVRPIPRVASPSA-QLGTRLHAWAERFVM 1159

Query: 796  LPEHK---------RKNFITSY---------CTKNAKLWPAKEYKNLLLSITRLLENPMM 837
                          R + I              ++ +   A + + LL    RL+++   
Sbjct: 1160 ADAESDAGVGNAVSRADLINDLAQDEAKIVRIEQSGESGNASQERKLLDWRRRLVQS--- 1216

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS---ISQQ----NIFIFEYKTHHHVP 890
              A    +++E  +   +       I++G++D +    I          I ++KT H   
Sbjct: 1217 VWAKRNPAWAERQLVVDVPQL--GTIVNGKLDAVFFGGIDPNDQSKTYTIVDWKTGHRPR 1274

Query: 891  QEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEP-----KVFIIPQNKLNKA 943
            +  E      +AQL +Y  +L      P  S+   L Y+SEP     ++  + + +  + 
Sbjct: 1275 KRNE--IDEKLAQLDMYRVLLSAMEGVPLNSIDACLYYLSEPKEGDRELKALDKTE-QEI 1331

Query: 944  FAEISTKIP 952
             AE+S  IP
Sbjct: 1332 LAELSYGIP 1340



 Score = 39.5 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 22/59 (37%)

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
           I   +      +     +   +    +  RL YV +TRA  ++++    ++   + S  
Sbjct: 864 IDDMEGMDPTGLYLTQSEEYGRRLHADERRLAYVALTRARHEVLLTFSVHSEESRDSRL 922


>gi|148272376|ref|YP_001221937.1| putative ATP-dependent DNA helicase/nuclease [Clavibacter
            michiganensis subsp. michiganensis NCPPB 382]
 gi|147830306|emb|CAN01240.1| putative ATP-dependant DNA helicase/nuclease [Clavibacter
            michiganensis subsp. michiganensis NCPPB 382]
          Length = 1089

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 115/1067 (10%), Positives = 277/1067 (25%), Gaps = 216/1067 (20%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVS----LSMETGNPTILKKAQTLQQA 56
            L++   L +                F+V       +      + TG       A  L   
Sbjct: 84   LRDELALRVGVPTLGPLARTATSVAFEVLARRAAETGTEPPRLLTGAEQDQIIADLLAGH 143

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
             +          L            + +  +    +  +L  +  +       + +    
Sbjct: 144  EELGTGPAWPDPL--------GVEVRRL--RAFRTELRELLMRATEEGVRPDALAELGRA 193

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKK--KNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
            + + +        A      YE+     +   LD  +L+     L+ + +          
Sbjct: 194  HDVPE-----WIAAAAFAREYEDVVDSFRGDHLDSAELLAEAVLLVSRGEALT------- 241

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
              I  ++ D++ + ++    ++R+L                + A GD   +  +F GAE 
Sbjct: 242  -GIRLVVADDLHEATVATLSLLRALAA----------RGADVVAFGDPDVAAATFRGAEA 290

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
              + R   +              + L    R    +  +   V +    A    +     
Sbjct: 291  SALGRLSTVLG------LPGLRTLVLDRVHRQPPALRALTSAVTARIGAAGAGRQRQ--- 341

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                                     +   P  +        +   + A  LAR     ++
Sbjct: 342  -------------------------AGSAPGLDDDADPIQIIEAPTRALELAR-----LA 371

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILT 413
              +  + +        +    ++VLVR     P +       +   +++V G   R  L 
Sbjct: 372  RRLREEHLLG-----GVPWARMVVLVRSGSLVPQVARSLATAEVPTRMAVAGRALRDDLA 426

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ-- 471
                I+ +  +   +    D  +   +   PL       + ++     + E   +  +  
Sbjct: 427  ALALIRAVDVVLGRVPLTPDIAA--ELATGPLGGLDGVALRRLRLAMRQEELAGDGHRSS 484

Query: 472  ---------------KFANCGISKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQ 515
                                   +   + + +     +A    +  +    +    K  +
Sbjct: 485  DELLVEALAAPGRLETLDLAPARRLGRLARTLQGARELASADGTIEELLWHLWEGSKLAK 544

Query: 516  QF---------ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYP-PTIKRA 564
             +         ++   N  +D +        R  E++      + + EL     P    +
Sbjct: 545  PWFEQALQTGIVADQANRDLDGVVALFTAARRFVERSPGRPASDFVEELLGAEVPEDTLS 604

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 + V + T     G    VV +      V+ +  ++   + P         +    
Sbjct: 605  PQPLADTVLVATPSAVVGAGYEVVAVAALQEGVWPNLRLRGSLLHPQRLSAVARGLDRAD 664

Query: 625  SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                           +     +  R+L + ++RAS  +++   +N         R     
Sbjct: 665  V------------DERAEVLGDELRMLALAVSRASRVVVLSATANDEEAPSPFLRLVPPA 712

Query: 685  VYDSFHND--------------------------ERVKKIKLTNSINKDEWIAYEWSTHH 718
               +                                V  ++   ++   + +  +     
Sbjct: 713  PGIAEAEAGVESGRVAKDAPAALRIRPDHPLSLRGLVGALRRELAVVHRDAVLLDDGRVV 772

Query: 719  PENTPLEREETIKQLM------------------DEQKIPKKLFSPIKND-------INE 753
              +    R     +                     +      L  P   +          
Sbjct: 773  SGDRTARRAADATRERGRAAASALARLAAEGVTGADPAEWYGLREPSTTEPVVDLTDPEA 832

Query: 754  PYILNPSTIDTKGKTNLESLLSD------NQTFNRGLIIHKLLQVIFTLPEHK-RKNFIT 806
               ++PS ++   ++ L   +        +     G I+H +++     PE   R   + 
Sbjct: 833  RVPVSPSRLEAFERSPLNWFIDQASGGSTSTAMGIGTIVHAVMEEASLDPEADLRPAALE 892

Query: 807  SYCTKNAKLWPAK----------EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
                +     P +          +   L+  ++  L +              ++  G   
Sbjct: 893  ERLDERWGELPFESPWVGERERRQAGELIAGVSGYLRD------FEARGGRMLAAEGGFE 946

Query: 857  CPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI----- 910
                   + G+ID+I ++++  + I + KT  H P   E       AQL  Y+       
Sbjct: 947  LEVGVARLRGKIDRIELTEEGQVVIVDLKTGRHFPTRAEIPA---HAQLGSYQLAYVEGS 1003

Query: 911  LKDSYPNKSLVCL-LIYVSEPK----VFIIPQNKLN-KAFAEISTKI 951
            L+            L+YVS          +PQ  L  +       +I
Sbjct: 1004 LEQVPAGTPSGGAKLLYVSGGTRGLPYRELPQEPLTREELDGFRARI 1050


>gi|145629400|ref|ZP_01785198.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.1-21]
 gi|144978243|gb|EDJ88007.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.1-21]
          Length = 662

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 148/446 (33%), Gaps = 53/446 (11%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
           ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248 ESADEILAIITNELEKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            +FL           T +   K P +               ++     M    L+ LTL 
Sbjct: 308 DYFLQSSIEKNCEESTDKNKDKKPAMP-----FYSPIFAELEKRVNALMTPDLLSKLTLY 362

Query: 131 KYLNAHYEEAKKKNCVLD---------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                HY +  ++  +LD         F+DL+    + L+       +   I  +    +
Sbjct: 363 -----HYRQGLQQK-LLDYKLNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAM 415

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QDT   Q+ +   +  D                +GD KQ+IY F GA+    L+  
Sbjct: 416 IDEFQDTDSQQYAIFSKIYRD------NPEKNTGFIMIGDPKQAIYRFRGADIFTYLKAS 469

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
              Q R            L  ++RS   ++  V+ +F  P++       + T +  R   
Sbjct: 470 DEAQSRFE----------LTKNYRSEKHLVDGVNALFDFPQSPFIYQNINFTAVDSR--- 516

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                     + +    + +  P    + +  D + +   A I A  I + + +      
Sbjct: 517 ---------DDHLRFYLNGKVEPAYRFYLTESDKVNKTEMAKICAISIQHWLKSAAENQA 567

Query: 362 IF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
           +F +    + +QA +I VLVR + +  L+    + L      SV  +D+  + D    K+
Sbjct: 568 VFQNEDTYKTLQAANIAVLVRDKNEAALVKNELQKLGIA---SVYLSDQNSVFDSNVAKE 624

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLF 446
           L  + +  L+  +      +  +  +
Sbjct: 625 LAWVLKACLNVAERPILNAIATALFW 650


>gi|308272255|emb|CBX28861.1| hypothetical protein N47_B20070 [uncultured Desulfobacterium sp.]
          Length = 1762

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/583 (14%), Positives = 162/583 (27%), Gaps = 159/583 (27%)

Query: 149  FEDLIINTNDLLK-----KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
            FED+I+   DLL      +      IR ++     HIL+DE QD    Q+ +I +L    
Sbjct: 1229 FEDIILEAIDLLSGQKELQGIEPDDIRDRLLGGYRHILVDEYQDIDQQQYHLISALAGRT 1288

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                       ++ AVGD+ QSIY F  A  + + R ++              I  L  +
Sbjct: 1289 L---KDPDRKLSILAVGDDDQSIYGFRKANVEFIRRFQKDY---------NARIYHLVDN 1336

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            +RST +I+   + +                       +      + +  +  S       
Sbjct: 1337 YRSTKNIIDAANSLICHNRVRM---------------KTEHPIRIDVLRKDSSPGGIWGA 1381

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                S  +      + S+    A  +   I  +                   I V  R  
Sbjct: 1382 KDPVSRGNIQIFSIKNSAEQ--AAAVVSEIKRLKKISPETDEAH--------IAVFARNG 1431

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + P ++ +   L+ +        DR        I++++                     
Sbjct: 1432 LNFPQLSMVRTALEKNEIAFSYALDRESSFPISRIREVVNFL------------------ 1473

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF-QHVIKYIHELIHIAQFCSPHD 502
                    ++ +I  + ++  ++ +  ++      + + + ++  +              
Sbjct: 1474 -------AELAQINNELYKATSLIDLYKRQTGSLPNNWDKEILHLLEAWKEETGDSEV-- 1524

Query: 503  FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
                                         F+   +     S +  +              
Sbjct: 1525 -----------------------------FVQAAIDFIYESLADQKREQRF--------- 1546

Query: 563  RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   + V + TVH  KGLE   VF++D G + + ++                     
Sbjct: 1547 ------GHGVYLSTVHGGKGLEFSHVFVLDGGWRSYQNQM-------------------- 1580

Query: 623  PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                  EE  RL YV MTRA D L +        +       W 
Sbjct: 1581 --------------------EVEEERRLYYVAMTRAKDTLTL--FKLADAKNPHVPMIWA 1618

Query: 683  DMV---YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            D +     +   DE         ++     +  +++   PE  
Sbjct: 1619 DCLVERKITISADECELYQFCHTAVPGMRHLYLDFAGKFPEKA 1661


>gi|269955593|ref|YP_003325382.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304274|gb|ACZ29824.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
          Length = 685

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 96/724 (13%), Positives = 189/724 (26%), Gaps = 169/724 (23%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A         + I    S +            + I          DL  +++ 
Sbjct: 95  ARTFHAAALRQLGYFWPRVIGGAPSRILEHKAPLVAEAARRIGVSVDRVAVRDLSSEIEW 154

Query: 103 SQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           ++   +   D             +         L   YE+ K +  V+DFED++     +
Sbjct: 155 AKVGLVAAEDYERRALATGRPAPAGFDHHQVARLATAYEDVKSERGVIDFEDVLQILAGI 214

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L +      I  ++  +  H ++DE QD S               +          L  V
Sbjct: 215 LTEN---RSIADEVRGQYRHFVVDEYQDVSP----------LQQLLLDQWLGDRNELCVV 261

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF GA P+ +L  ++   K           + L   +RST  ++ + +++  
Sbjct: 262 GDPSQTIYSFTGATPRYLLEFRKRFPK--------AHEVRLVRDYRSTPQVVHLANELLR 313

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                  L          R+ R                          S+T+Y D   + 
Sbjct: 314 RGRVTGAL--------GLRAQRPAGP--------------------PVSFTAYDDDEAEA 345

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
           +  +  A         +I T T          +  +I VL R    +           +D
Sbjct: 346 AGIAAKAG-------RLIATGT----------RPSEIAVLYRTNAQSEAFETAL----SD 384

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I               ++D + L R      D                         +
Sbjct: 385 AGIGYQVRGGERFFQRKEVRDAVVLLRGAARSADPDQP-------------------MPE 425

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           +          Q+         +        L+ +A                        
Sbjct: 426 QVRDVLTTAGWQEKPPAARGAARERWDSTQALVALAD----------------------- 462

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                         +       +  + ++ +L++ELE+               V + ++H
Sbjct: 463 --------------DLARTASGDGRAATVADLVAELEERAAAQHAPTVEG---VTLASLH 505

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGLE   VFL      +                                     +   
Sbjct: 506 AAKGLEWDAVFLAGVSEGLMP-----------------------------------ISLA 530

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                  E  RLLYVG+TRA   L +    + +   ++ ++    +       +     +
Sbjct: 531 ETDDAVAEERRLLYVGVTRARVHLEVSFARSRAPGGRAGRKRTRFLDGLWPDGETSRGGV 590

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
               +  +   +          +   E    +   +D+      L   +   + E    +
Sbjct: 591 PRAGARGRSRDLLTGDHDPELFDALREWRRQVAVEIDKPAYT-VLTDAVLAAVAEVRPTS 649

Query: 759 PSTI 762
            + +
Sbjct: 650 TTQL 653


>gi|226305711|ref|YP_002765671.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus erythropolis PR4]
 gi|226184828|dbj|BAH32932.1| probable ATP-dependent DNA helicase UvrD2 [Rhodococcus erythropolis
           PR4]
          Length = 718

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 96/666 (14%), Positives = 185/666 (27%), Gaps = 164/666 (24%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A    +    Q I +    L         +    +      +   DL  +++ 
Sbjct: 95  ARTFHAAALRQLKYFWPQVIGDTPWRLLDRKFAVVSSAAARVGLSTSTESVRDLASEIEW 154

Query: 103 SQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII------- 154
           S+   I   D      K+ +      T    + A YEE K +      + +++       
Sbjct: 155 SKASLIAPEDYPRAIAKIRREAPVDATKVAQVYAAYEELKARGQ----DGMLLDFDDLLL 210

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
           +T   L++    + +  +  +     ++DE QD + +Q  V+ +   D            
Sbjct: 211 HTAAALEEH---STVADEFRERYRCFVVDEYQDVTPLQQRVLDAWLGD----------RD 257

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            L  VGD  Q+IYSF GA P  +L   R   +         +++ L   +RST +++++ 
Sbjct: 258 DLTVVGDANQTIYSFTGATPNYLLDFSRKFPE--------ATVVRLERDYRSTPEVVSLA 309

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           ++V             + T ++    R                                 
Sbjct: 310 NRVIGAARGR-----IAGTRLQLIGQRAPGPEP--------------------------- 337

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
              +       A  +A  I  +I   T           A +I VL R    +        
Sbjct: 338 EFMEFDDEPAEALGVARAIKRLIAAGTP----------AAEIAVLYRINAQSEAHEQALT 387

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            L     I               ++  +A  R    ++D          P    + + + 
Sbjct: 388 KL----GIPFQVRGGEGFFTRTEVRQAVAALRQAAGRDD---------LPEGADNGEALV 434

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
            +         +            ++ +     +  L+ + +    H+     L      
Sbjct: 435 SLVRA-----VLAPLGLTNEEPSGTQARERWASLSALVALTEEQLVHEPE---LSLTGLL 486

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           Q+  +R                   E     ++Q                       V +
Sbjct: 487 QELTAR------------------AEARHPPTVQG----------------------VTL 506

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            ++H AKGLE   VFLV         +H+                              D
Sbjct: 507 ASLHAAKGLEWDAVFLVGLNDGTLPIQHVLG----------------------------D 538

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                     EE  RLLYVG+TRA + L +      +   + ++R    +      +   
Sbjct: 539 ANSGADDVAVEEERRLLYVGVTRAREHLQLSWALARNEGGRKSRRRSRFLNGLIPEDSPA 598

Query: 695 VKKIKL 700
            +    
Sbjct: 599 SRVAAP 604


>gi|171742279|ref|ZP_02918086.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC
           27678]
 gi|283456614|ref|YP_003361178.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
 gi|171277893|gb|EDT45554.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC
           27678]
 gi|283103248|gb|ADB10354.1| ATP-dependent DNA helicase, UvrD/REP family [Bifidobacterium
           dentium Bd1]
          Length = 1346

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/446 (13%), Positives = 140/446 (31%), Gaps = 42/446 (9%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
                 +     +  N      +     +  +  + ++   +    +   +L        
Sbjct: 151 LASFGTIAGRVFALSNAISGAMIGGDCTSFDEAVERVRAWDEAFVAQVAKALEDEEIPAD 210

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
              P+     ++ + +  + +++  + Q   + +        + +     L L       
Sbjct: 211 IKAPKPLKRKKKESGEDFEARKRQYREQCHALCVYKVSQLSDVTRQRDLLLHLVAD---- 266

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y   K+   + +F D  I    L+ +      I     +  +H+L+DE QDTS  Q  ++
Sbjct: 267 YNAEKRARNMAEFSDFTIAAFQLVTRFPS---IGATYRKRYSHVLLDEYQDTSTTQAALL 323

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            SL       ++  +      AVGD  QSIY++ GA P      +R          +   
Sbjct: 324 ASLFHVDSARRSAVN------AVGDPFQSIYAWRGASPGAFRMLQRDF-----GMSETDK 372

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L ++ R++  +L   + +              T  +R    R+      ++    +S
Sbjct: 373 PFALSVTRRNSRMVLEAANNL--------------TKPLRLPVRRLSSSLMREVDVPALS 418

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
             D+                  ++        IA      + T +  +           +
Sbjct: 419 NIDTAPEGTLGVLGFATFGQEIDAVVRFAKHAIA------LHTPSDAALAGGVKDNRPHV 472

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VL R ++  P      +       ++ +   +  L +   ++D+ AL   I    D  S
Sbjct: 473 AVLFRSKQSMPKYEDALK----QAGLTTLVVGQAALLERPEVQDIFALLHVICDHTDSGS 528

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHE 462
            + +L +P F     D+  +      
Sbjct: 529 LMRLLATPRFGVGAADLQALAAIAEN 554



 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 106/364 (29%), Gaps = 32/364 (8%)

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
             G  +        + +V D      +    E   L +               ++      
Sbjct: 982  DGYFVGEHARDYEDAVVGDAWNAPLEPA-AEQRNLPWPCGLSDRLATTFAASADQVRSAM 1040

Query: 676  SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  YD        D+    +  +  +     +  E       ++  + +  ++   +
Sbjct: 1041 QALSGAYDGHDGDQSADDMTMPVDESLLLRARLLVGDEHLMPDTGDSATDFDAAVRVRGE 1100

Query: 736  EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                  +                 S+   +G       ++       G  +H   +    
Sbjct: 1101 RILAGGRQNVTSLQARAGVMDDRSSSEYWRGLVRPIPRVASPSA-QLGTRLHAWAERFVM 1159

Query: 796  LPEHKR---KNFITSYCTKNAKLWPAKEYKNLLL--------SITRLLE--NPMMTTAMS 842
                      N ++     N       +   +             +LL+  + ++ +  +
Sbjct: 1160 ADAESDAGVGNAVSRADLINGLAQDEAKIVRIEQSGESGNASQERKLLDWRHRLVQSVWA 1219

Query: 843  CDSYSEVSVSGKINCPKKDIIISGRIDQIS---ISQQ----NIFIFEYKTHHHVPQEIEH 895
              + +       ++ P+   I++G++D +    I          I ++KT H   +  E 
Sbjct: 1220 ERNPAWAERQLVVDVPQLGTIVNGKLDAVFFGGIDPNDQSKTYTIVDWKTGHRPRKRNE- 1278

Query: 896  IPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEP-----KVFIIPQNKLNKAFAEIS 948
                 +AQL +Y  +L      P  S+   L Y+SEP     ++  + + +  +  AE+S
Sbjct: 1279 -IDEKLAQLDMYRILLSAMEGVPLDSIDACLYYLSEPKEGDRELKALDKTE-QEILAELS 1336

Query: 949  TKIP 952
              IP
Sbjct: 1337 YGIP 1340



 Score = 39.5 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 22/59 (37%)

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
           I   +      +     +   +    +  RL YV +TRA  ++++    ++   + S  
Sbjct: 864 IDDMEGMDPTGLYLTQSEEYGRRLHADERRLAYVALTRARHEVLLTFSVHSEESRDSRL 922


>gi|121730735|ref|ZP_01682841.1| acriflavin resistance plasma membrane protein [Vibrio cholerae V52]
 gi|121627693|gb|EAX60345.1| acriflavin resistance plasma membrane protein [Vibrio cholerae V52]
          Length = 356

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 35/243 (14%)

Query: 50  AQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           A  L+        +++ +LL            K +  ++++     L+  L    +    
Sbjct: 98  ALGLKAGFSLFDDQDQLALL------------KELTEKQLDGDKDLLRLLLSTISNWKND 145

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +        M K       L  +    Y++  +    LDF+DLI+    LL+  +    +
Sbjct: 146 MLTPPQAKAMAKGEQQL--LFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEE---V 200

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R +    I ++L+DE QDT+  Q+E+++ L  +             L  VGD+ QSIYS+
Sbjct: 201 RQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGE----------RGRLTVVGDDDQSIYSW 250

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+P+ ++                  +I+L  ++RST+ IL   + + +   +    + 
Sbjct: 251 RGAKPQNLVLLGEDFP--------SLKLIKLEQNYRSTSRILRAANILIANNPHVYQKAL 302

Query: 290 DST 292
            S 
Sbjct: 303 FSE 305


>gi|269955586|ref|YP_003325375.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
 gi|269304267|gb|ACZ29817.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894]
          Length = 1197

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 119/1074 (11%), Positives = 270/1074 (25%), Gaps = 207/1074 (19%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYV----SLSMETGNPTILKKAQTLQQA 56
            L+++   +   +             F V           + ++ +G    L  A+ L   
Sbjct: 84   LRDQVAAASGRTLGAPLVRTASSAAFAVLRTRAAALGEPTPTLVSGPEQDLVLAELLAGH 143

Query: 57   SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
             + +             L     P + +  + + +   +L++ L ++ +    IR     
Sbjct: 144  LEGEGAP---------LLLPDGLPSEALGLRGLRQ---ELRDLLMRAAER--GIRPDELA 189

Query: 117  YKMFKSTLASLTLAKYLNAHYEEAKKKN-------CVLDFEDLIINTNDLLKK-RDVSAW 168
                       ++A  L   Y +               D   ++      L    +    
Sbjct: 190  QLGRTHARPEWSMAAQLYEEYLDVTALRLGTPDSGARFDPAVVVDEAAQSLAAWEEELPG 249

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +        + +++D+ Q+ ++    ++ +L            S   L  + D   ++  
Sbjct: 250  V---PRPSWDLVVVDDYQEATVATARLLHAL----------RDSGARLVLLADPDSAVQG 296

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F GA P  V R      +     G     + L   +R T ++  V   V +      G  
Sbjct: 297  FRGATPGLVGRA-SAPPRSLGAFG--AEEVVLGTVWRQTPELRDVTRVVTTRIPTVGGPF 353

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR- 347
            +   + +          G     + VV   D+  N          D     S   + A  
Sbjct: 354  QRGASAVVPDDGASDGDGVAHGDDGVVPYDDASSNVAGHDADDGDDGPGTTSPDGLAAAG 413

Query: 348  ----------------RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                            + A  I+  +  + +           + ++V+ R          
Sbjct: 414  GPAPSGVAVAVLAGQAQEAAFIARELRAEHLLH-----GTPWERMVVIARSGDRLG---- 464

Query: 392  LTRFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFIL--------------------- 429
              R       + V        L +  A+  L+A  R                        
Sbjct: 465  ALRRDLVAASVPVALLGSDVPLREEPAVAPLLAALRVSAGTAPGSLDAVLAELVGGDDTA 524

Query: 430  ---SQE-----------DDLSFVCMLKSPLFNFSEDDIFKICTQRH-------------- 461
                 +           D  +   +L SP+       + ++                   
Sbjct: 525  TSSDPDGLTAPEPYPLLDAETAAALLTSPVGGLDAVALRRLRRALRAEELAGGGGRSSDA 584

Query: 462  ---ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQ 516
               E            N        V + +      A     +       +  A     +
Sbjct: 585  LLVELLDDPARAVTLPNPVKRGAVTVARVLAAGRAAAGEPGATAQTVLWAVWDATGLAAR 644

Query: 517  FISRF------GNEVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYPP--TIKRA 564
            +          G      LD  L      E    +   + +   +  L           A
Sbjct: 645  WRDAALAGGPAGVRADRDLDAVLALFRAAETYVDRMPGAPVAAFVDYLSSQDLPADSLAA 704

Query: 565  HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI----MPSLNDDPGIPI 620
             ++  + V  +T   A G E  V  +      V+    ++   +    +  L        
Sbjct: 705  SASGAHAVEALTPAGAAGREWDVAVVAGVQDGVWPDLRLRDSLLGSQALVELLAGRSQDA 764

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ------LIICKHSNTSNEK 674
                  +R  +++D ++    +      RLL   +  A D       L++    +   + 
Sbjct: 765  HGLGPDARKQVLADELRAFAVAISRARRRLLVTAVEDAEDAPSVFCDLVVPPGEDEERDP 824

Query: 675  KSNQ-------RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
            +  +       R        +         + +         I             +E  
Sbjct: 825  RRVEVAAPLDLRGVVATARATLLRAVAAPSLPVVAEAPPSSVIDAALPVVAAALPVVEPV 884

Query: 728  ETI----------------------------------------KQLMDEQKIPKKLFSPI 747
            ET                                                 +        
Sbjct: 885  ETTHEQPGDVVSTGSTTGGHGSTTEAQTAAALLADLAAAGVPEADPRTWYGVAGASSDAP 944

Query: 748  KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN-------RGLIIHKLLQVIFTLPEHK 800
                +    ++PS ++T     L                   G ++H + + + T     
Sbjct: 945  LWADDAVVPVSPSKVETVTTCALRWSFEAAGGTAADDQNQTLGTLVHAIAEALPTGSLSA 1004

Query: 801  RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
             K  +     + A L P    + L     +++E+  + T +  D+ S ++V  + +    
Sbjct: 1005 LKAELDRRWPQLA-LPPGWPARQLRQRAEQMIEH--LATYL-ADAGSPLAVEAEFDVEVG 1060

Query: 861  DIIISGRIDQISISQQNIFIF-EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
               + G++D++  +     I  + KT    P   + +      QL  Y+  ++ 
Sbjct: 1061 RARLRGKVDRVEDAGDGAAIVADLKTGRKAPTVDQSVT---HPQLGAYQLAVEA 1111


>gi|225020706|ref|ZP_03709898.1| hypothetical protein CORMATOL_00713 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946652|gb|EEG27861.1| hypothetical protein CORMATOL_00713 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 697

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 108/801 (13%), Positives = 202/801 (25%), Gaps = 196/801 (24%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A         Q        L            +++      +   D+  +++ 
Sbjct: 85  ARTFHAAAMRQLAYFWPQVAGNLSWQLLDNKFPLVGRAARSLGIDSSVENVRDILSEIEW 144

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
           ++   I   +++      + T     +   +   YE+AK         D+++   D L  
Sbjct: 145 AKSRLIS-PEQYVAETAHRHTPQPAPIVAQIYQRYEDAKIN------PDVMLLDFDDLLL 197

Query: 163 R-----DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
                 + S  I  +   +    ++DE QD + +Q  V+ +   +             + 
Sbjct: 198 HVAGAIENSTAIAEEFRAQYCTFVVDEYQDVTPLQQRVLSAWLGN----------RDDIT 247

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD  Q+IYSF GA P+ +L   R             ++++L   +RST  I  + + +
Sbjct: 248 VVGDANQTIYSFTGASPEFLLDFSRTYPH--------ATVVKLQRDYRSTPQITDLANTI 299

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            S           S T ++ R         V                             
Sbjct: 300 ISQATGR-----VSGTKLQLRGMLPAGPAPV---------------------------FA 327

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                   AR +A  I N+I             I   +I VL R    +           
Sbjct: 328 GYDDEPAEARAVAGHIKNLIEQG----------IPPAEIAVLYRINAQSAPFEQAL---- 373

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            D  I               I+  ++    +  +E+           L      ++ +  
Sbjct: 374 ADAGIVYQVRGGEEFFKRPEIRQAISTLIRLSQREEHQPPD------LIGPRIHELVE-S 426

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                  T  E     A       Q +++   EL       +       +          
Sbjct: 427 ALAPIGLTPQEPEGAQARERWQSLQALVELSKELGKATPDLNLIGLLHQLHQRDT----- 481

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                                       ++Q                       V + ++
Sbjct: 482 -----------------------NKHPPTMQG----------------------VTLASL 496

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE   VFLV          H  K  +                             
Sbjct: 497 HAAKGLEWDAVFLVGLTDGSLPITHAIKAGV----------------------------- 527

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
               +  EE  RL YVG+TRA   L     +      + +++    +            K
Sbjct: 528 ----AAIEEERRLFYVGVTRARKHLFHSWSAARQEGGRHSRKRTRFL----DDIIPETNK 579

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
           I       +    A       P     ER            + +    P   D      L
Sbjct: 580 ITTAKPAKRHRRPARCKVCGSPLVDTPER-----------ILGRCNNCPSDADPQIFETL 628

Query: 758 NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                      N+ + +  +    +      + + + T                N     
Sbjct: 629 RVWRAGVAKTNNIPAYIVFSDATLQ-----AIAEALPTNTAE--------LLKINGIGQV 675

Query: 818 AKEY--KNLLLSITRLLENPM 836
             E   ++LL ++ + L++  
Sbjct: 676 KVERYGQDLLETVAQFLDDDE 696


>gi|284800228|ref|ZP_06390623.1| exodeoxyribonuclease V, beta subunit [Neisseria subflava NJ9703]
 gi|284795653|gb|EFC51000.1| exodeoxyribonuclease V, beta subunit [Neisseria subflava NJ9703]
          Length = 681

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 88/673 (13%), Positives = 187/673 (27%), Gaps = 133/673 (19%)

Query: 342 ASILARRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
               A   A  I+  +        N K R +++ DI VLVR   +  +I    +      
Sbjct: 2   RGRAAEYCADEIAFALNEAAEGRLNFKGRALESGDIAVLVRTNNEAAMIAGKLK----QR 57

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
           +I  V   R  + D      L AL  F L+         +L   LF ++  +I+++    
Sbjct: 58  RIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLFGYTAKEIYELNHNE 117

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           H+     E                 + + +                         + +  
Sbjct: 118 HQLLKWLESS--------------AQAMEKWRK----GGIFAAVQQFAALHDIETRLLKG 159

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY----------PPTIKRAHSANHN 570
                +    + L      E +   +   L   L +                    ++  
Sbjct: 160 GNERSLTNYYQILELLAE-EDSQSRNPAALHKWLNEQISRARSGHFPSDAQTIRLESDEK 218

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V+I+T+H +KGL+ P+V+         + K   K+    S   +            ++ 
Sbjct: 219 LVKIVTMHASKGLQYPLVYCPFAWDTKDNSKENWKILHTESHETELLA---------KSQ 269

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                + HL      E  RLLYV +TRA +QL I   +N +    +      + + D+  
Sbjct: 270 TSEAELSHLADEKTAEDLRLLYVALTRAEEQLNIYAAANKNCTPNNPFAYLLEGLSDAGR 329

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ------------- 737
                     T+ +   +     +  + PENT     E        Q             
Sbjct: 330 ESVSQSYKSATDVVEMLKTNWQRFIKNAPENTEFAFTEEAPPETVYQYSRQQDQAFSAHS 389

Query: 738 ------------------------KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                                       +   P  +         PS       ++   +
Sbjct: 390 IKRRDFDFIRHTSFTGLSRHTKSTDEQHEPLQPAIDPAESADRAMPSENLPPPLSDGLDI 449

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
               +  N G+ +H++L+ +      + ++ + +   +             L ++  +L+
Sbjct: 450 HHFPRGTNAGVCLHEMLEKLDFAASAESQSEMIAEVLQRHSFED-----KWLPTVITMLD 504

Query: 834 NPMMTTAMSC--------DSYSEVSVSG------------------------------KI 855
              +T  ++             E+  +                                +
Sbjct: 505 TCRLTPLINESLSQIPTTRRLPEMGFTLYMDDFKLDDLRRWFASSEANLPPECVQAAQLL 564

Query: 856 NCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPY---------THIAQLS 905
           +       ++G ID +     + + + +YK++H       +             +  Q  
Sbjct: 565 DFHDLQGYLNGFIDMVCQDSDSNVVLIDYKSNHLGNDASAYTQQAMNEAVAHHHYYLQAL 624

Query: 906 IYEKILKDSYPNK 918
           IY   +   Y  +
Sbjct: 625 IYAVAIARYYALR 637


>gi|150400668|ref|YP_001324434.1| UvrD/REP helicase [Methanococcus aeolicus Nankai-3]
 gi|150013371|gb|ABR55822.1| UvrD/REP helicase [Methanococcus aeolicus Nankai-3]
          Length = 751

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/561 (15%), Positives = 180/561 (32%), Gaps = 67/561 (11%)

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQW 193
             Y E  +   +  F  + +   D L   D   ++     +  I HI++DE QDT+ IQ 
Sbjct: 209 EKYLEKLEGFKLCTFSTIQLKFIDFLNSEDGELFLSGSGYNPPIKHIMVDEYQDTNPIQE 268

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+   + +              L  VGD+ Q++Y F G   + ++   +   ++      
Sbjct: 269 EIYFKMAKQI--------ENNNLCVVGDDDQAMYRFRGGTVECMVNFDKTCVEKFNIPID 320

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
           K + I L  ++RS  DI+   D   +  +  + +  +       R+    +   V     
Sbjct: 321 KINKIFLKSNYRSHPDIVKYYDDYINSYKYTKDVEME-------RARVKDKPQLV----- 368

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                  + + +        + + +E     LA  +A TI      D I    +  ++  
Sbjct: 369 ----AKKEMDKETIDNYLALNYIEKEDDEK-LAEEVANTIKYFKDNDIIEDYSQCVILIK 423

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
               +               R    +  I +         +   IK  +     I+  + 
Sbjct: 424 STREIDYNGNDS---FIGHIRQKLLNNGIDIYNPRSKNFLNQEEIKLALGAFISIVDTDI 480

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK------Y 487
            +    +   P+     +++ K   +    +  Y  ++K+ +  + K + + +       
Sbjct: 481 SVLENNLRSQPI----SNEVVKWYEEYQNNKNKYPELKKYVDSSVEKLKTMEEGSFINSS 536

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN----FTLRNEQN- 542
           I  +++    C P   +           +  + F +      +  ++        + +  
Sbjct: 537 IENILYKIYACYPFTEWLNDEEKSYRLAKLTNLFNSYSTIPTENLISKGSISIDGHTKGK 596

Query: 543 -SYSSLQELI-----SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                L E         L           +    +V IMTVH AKGLE P VF+     Q
Sbjct: 597 VDVKWLIEFYGSLVGHFLGGIDDIEDEEITIPEGKVPIMTVHQAKGLEFPFVFVYLQKWQ 656

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
             ++             D                    +    +K T ++  R  YV  +
Sbjct: 657 NKANDGAILEREFAEFTD-----------------FKRISTIPRKKTFQDIIRFHYVAYS 699

Query: 657 RASDQLIICKHSNTSNEKKSN 677
           RA   LI    S+  ++K ++
Sbjct: 700 RAQYGLIHLWTSDIIDKKNNH 720


>gi|121582897|ref|YP_973339.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120596159|gb|ABM39597.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 619

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 96/621 (15%), Positives = 180/621 (28%), Gaps = 156/621 (25%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   +  +         P L  +L  +      I+      K ++         + L  
Sbjct: 121 KEGNRRSAVARAFDAAAVPGL--ELDDATALIEGIKSGQVAPKCYEE--------ELLVK 170

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  +++ V+DF+D+++ TN+ +K   +S           +++L+DE QDT L Q   
Sbjct: 171 TYTDVLERHGVIDFQDILLKTNEGIKDGRISTL-------RTDYLLLDEYQDTDLPQLTW 223

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE-PKRVLREKRINQKRATNAGQK 254
                +          +   + AVGD+ QSIY F  A     +L  +   +         
Sbjct: 224 TMHHAK----------TGSIITAVGDDDQSIYGFRRALGFGGMLSFENDLR--------- 264

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
            + + L L++RS +++L    K+ ++  N    +  S              G    WE+ 
Sbjct: 265 ATRVVLGLNYRSHSEVLEPSAKLIAVNLNRMDKALVSNK----------GPGGATAWERF 314

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
            S                           + A   A TI   +                +
Sbjct: 315 AS-------------------------RKLEAIACAQTIKTSLEEK-------------Q 336

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            + VL R  K    I      L+    I    +    +     +   M+    +      
Sbjct: 337 SVGVLARTNKRLDEIETQCIALE----IPYSRSAGGSVLKTREMSVFMSALSCMTRSSAK 392

Query: 435 LSFVCMLKSPLFNFSEDDIFKICT---------QRHETETVYEYIQKFANCGISKFQHVI 485
            +   +         E D+  +            R  T+     I+      ++K     
Sbjct: 393 DTDELLA---WCGVDEQDLTALYQTFGDGLFDVARKRTDIGKAPIKDATKLLVAKLAKSF 449

Query: 486 KYIHELIHIAQFCSPHDFFTLILG---AKKGRQQFISR----FGNEVIDVLDEFLNFTLR 538
                 I         D    +LG     K  ++ +          + + +   LN    
Sbjct: 450 SDWKAFIRTGGSSMVVDGVVQLLGSYTEDKYSKKMLEIVAGVLTPPINENVP--LNKAQE 507

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +        +  ++ +       K         V +MT H +KGLE  +V++V      F
Sbjct: 508 H-------FECRLNTIRAAMERPKTKEDEAGKPVVLMTAHGSKGLEFDMVWIVGAEEDTF 560

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                    K S+ +E  RL YV MTRA
Sbjct: 561 PD---------------------------------------KASSVQEERRLFYVAMTRA 581

Query: 659 SDQLIICKHSNTSNEKKSNQR 679
              L I         +   + 
Sbjct: 582 RKHLWISASGKLDVSRFVFES 602


>gi|227502911|ref|ZP_03932960.1| helicase [Corynebacterium accolens ATCC 49725]
 gi|227076333|gb|EEI14296.1| helicase [Corynebacterium accolens ATCC 49725]
          Length = 846

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 124/901 (13%), Positives = 236/901 (26%), Gaps = 169/901 (18%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             + A      YE  +  +    +    +    LL+    S+          + I++D+ 
Sbjct: 1   MWSAAGTFLREYERVQALSGAHSYSAAELVNQVLLRPELTSS-------HPWHTIVVDDA 53

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           Q       ++I  L              + L   GD  QS+++F GA  + +        
Sbjct: 54  QLLDPTAGKLISRLA----------PDAQLLVIGGDADQSVFAFRGANSQFLEEFPAE-- 101

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                     + +EL    RS                                    G  
Sbjct: 102 ----------NSVELSQPHRS------------------------------------GSP 115

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
             V + +      D   +  +             +        I      ++        
Sbjct: 116 ACVSIVDSEGRLRDVVADTVRRRHLDDGVQWRDIAVIVRSTADIGQMRRTLLAAGVPVHI 175

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI-SVVGNDRFILTDHLAIKDLMAL 424
               VI A+  LV         L   L+     +     V G+D   L   +      A 
Sbjct: 176 SPTDVILAEQRLVSAMLLALRALEEDLSNAELEELLTGPVGGSDPVTLRRLIRGLRRWA- 234

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
                           + S L      ++     Q  E E       +       +    
Sbjct: 235 -----------PDTRGMDS-LRELLHGELPDFNGQLTEREFSILERVRAVLAAGRQAMQA 282

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-EQNS 543
              + E++      +  D     L A   R        +  +D +    +      E+  
Sbjct: 283 QASVEEILWEVWSATELDMR---LQASALRGGATGSQADRDLDAMMALFDAAGDYSERRP 339

Query: 544 YSSLQELISELEQYPPTIKRAH--SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            SSLQ  ++ + +           +A    V I+T H A G E   V +       +   
Sbjct: 340 GSSLQSFLTHITEQELPTGVRDRRTAIPQAVEIITAHGAVGREWDTVIVAGAQEGAWPSL 399

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                        D       P +                S   E  RL +V  TR   +
Sbjct: 400 GETGSIFGQEDLIDLLDRDIEPDTPV----------SHIASRLAEERRLFHVATTRHRSR 449

Query: 662 LIICKHSNTSNEKKSNQRTW--------------------YDMVYDSFHNDERVKKIKLT 701
           L+I    N++ +  +    +                       +  +    E    +   
Sbjct: 450 LLIAAVENSNEDAFAEPSRFIAEFTGRGVDVPGTMARREASRALRATQFPRELGLDVPEP 509

Query: 702 NSI-----------------------NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
             +                            +A   S          +   + Q      
Sbjct: 510 APVSLRDGLEVDPLDISVLSVPSFVAQLRRVVANPESGEAERRQAARQLARLAQAEIPGA 569

Query: 739 IPKKLFS----PIKNDINEPYILNPSTIDTKGKTNLES----LLSDNQTFN---RGLIIH 787
            P + FS         +     L+PS ++      L++    L  D        RG + H
Sbjct: 570 HPDQWFSARSVASHTQLRGSKSLSPSRVEALLNCPLKAIVGNLAEDPSGAEHLLRGTMAH 629

Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
             L+ I    + ++   +     +     P  + ++ L   +RLLE      A   +  +
Sbjct: 630 AFLEAIGRGMDAEKARLLVMEAYELILDVPQWQLQSKLEEFSRLLERTQ-QWAQQSEVKN 688

Query: 848 EVS-VSGKINCPKK-DIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           E++ V   +      DI + G +D++         + + KT      + E        QL
Sbjct: 689 ELAGVEVLVYVEVAPDIRVGGFMDRLMKDGDGNYLVVDLKTGKSAATQAEAEENR---QL 745

Query: 905 SIYEKILKD-SYPNKSLV---------CLLIYV--SEPKVFIIPQNKL-NKAFAEISTKI 951
             Y+  L   S+  + +           +L+Y      K+    Q++L  +A  E S  +
Sbjct: 746 MTYQLALSRGSFDGQRVRDGEGMPRAGGVLVYPGKDSSKITTRTQSQLTAEALEEFSALL 805

Query: 952 P 952
           P
Sbjct: 806 P 806


>gi|300814901|ref|ZP_07095132.1| UvrD/REP helicase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300510991|gb|EFK38260.1| UvrD/REP helicase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 345

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 122/317 (38%), Gaps = 76/317 (23%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y + K++  +LDF+DL+I  N+L++ +DVS     K++++  +ILIDE QD +++Q  +I
Sbjct: 38  YTKEKRERGLLDFDDLLIYGNELVQNKDVSD----KLNKKFTYILIDEFQDVNILQNNII 93

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L            + + +F VGD +Q+IY F G+         ++ + +     ++  
Sbjct: 94  CGL------------NSKNIFIVGDPQQAIYGFRGSFIGIFDNFYKLFRDK----DKEIL 137

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            + +  ++R+ A I++ ++ +F+                          G V   +    
Sbjct: 138 TLNMNKNYRTDASIISDINTLFNNI-------------------FTDYQGLVANNKASRK 178

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                   + +                         I  ++  +            +KDI
Sbjct: 179 IEKYTVCDEDDYLKL---------------------IKYLLSEN-----------DSKDI 206

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L R   +   +    +       I V    +  L     IK +++  R I ++ D  S
Sbjct: 207 GILARTNGELEKLETYLK----QNNIDVN-RGKINLKQTQVIKFILSFLRSIFNKNDFTS 261

Query: 437 FVCMLKSPLFNFSEDDI 453
           F+  + SP  + S + +
Sbjct: 262 FMDYISSPFCDLSFNSL 278


>gi|296162532|ref|ZP_06845322.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
 gi|295887240|gb|EFG67068.1| UvrD/REP helicase [Burkholderia sp. Ch1-1]
          Length = 563

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 81/549 (14%), Positives = 155/549 (28%), Gaps = 140/549 (25%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y+EA  +N  +DF+D++      ++  D+  +           +L+DE QDT  
Sbjct: 142 AQLYHAYQEALARNGKIDFQDMLRLAVAGMEAGDIEPY-------RFTDLLVDEFQDTDP 194

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q+  +    +          +   +  VGD+ QSIY F  A      R           
Sbjct: 195 LQYRWVELHAD----------AGARVTVVGDDDQSIYGFRAA---LGFRGMESFAASFNA 241

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L  ++R  ++IL   D+V     +       +           G  G +  
Sbjct: 242 -----QRIVLGSNYRCRSEILAAADRVIRNNVDRIAKVLHAER---------GAGGAIAT 287

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                   D                          A      +  ++             
Sbjct: 288 RRFDDEYSD--------------------------AVAAVEQLQPLLAAG---------- 311

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI-- 428
                  +L R  +    I  + R     + +         + +      +  L +    
Sbjct: 312 ---NSCAILARTNRILDPIEAVCRS----HGVPYYRASGASVLNGPQGALMCNLLQIAEG 364

Query: 429 --LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
              +  D +     + S        D+  +  QR + + V       ++   S ++  +K
Sbjct: 365 RKQNGLDAVLGYTGMSSTHLGALHRDMGAVLIQRAKKDLVA---LGLSDDTASAYRAFMK 421

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            + E   + +          +L       +                 +   R  Q +Y  
Sbjct: 422 RLAEWTQMCERRFYALALDGVLEMMMTYARD----------------DRAKRAIQATYDV 465

Query: 547 LQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           L  L     +    +KR ++   +  + + T+H++KGLE   V++      +        
Sbjct: 466 LSRLNGTFAERIEYLKRDNNKPADGALVLTTMHSSKGLEWNHVWITRAEEGIVPD----- 520

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                             +KST+ E  RL YV MTRA D L I 
Sbjct: 521 ----------------------------------EKSTESEERRLFYVAMTRARDTLTIA 546

Query: 666 KHSNTSNEK 674
                   +
Sbjct: 547 TIKKNPVSR 555


>gi|28871867|ref|NP_794486.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855120|gb|AAO58181.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 907

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 103/666 (15%), Positives = 196/666 (29%), Gaps = 104/666 (15%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI-------ITQEINKKSPDLKEK 99
           L+  +   Q    +        L    L     P+  +          +         ++
Sbjct: 85  LEFLRKYHQIFGLESDVRLADPLMQVRLMVSTLPKVRLKYYLRLQNPYDWLPGVLGHIKR 144

Query: 100 LKKSQDEFIKIRDRFNTYKMFK-STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           LK+        R R       +            L   YE A +   ++D+ DLI     
Sbjct: 145 LKEECLTVADYRARLAALPPCEPDVANEREDIATLFEAYETAMRAEHLVDYVDLIALPAS 204

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
             K+   S     +     +H+L+DE QD + +  +++R L  +           ++ +A
Sbjct: 205 QAKRDRTSV---AQYIDHFSHVLVDEYQDVTEVMVDLLRQLALN----------AQSFWA 251

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD +Q+I+ + GA  + ++             G       L L+ RST +IL     +F
Sbjct: 252 VGDVRQAIHHWRGASIRSLMHFDATFLSTIP--GATVRRYALDLNRRSTPEILE----LF 305

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           S       L+ D        + R        L+                          +
Sbjct: 306 SCAGIHHALN-DRMPLEPVTAYRPSIGVIPTLY--------------------------E 338

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             S    A  IA  I  ++           R +  +D +V+ RK  +   I      L  
Sbjct: 339 CDSKLSQAVTIAQRIDGLVQ----------RGVPYRDQVVISRKSANVEQIVEALENL-- 386

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              + V+          +     +     +       S V ++  P F     DI  +  
Sbjct: 387 --NVPVLHIGDVCQRPEIKKLLCLMELLCMRQP---RSLVGLISEPAFRMPPQDIEHLIF 441

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHE-----LIHIAQFCSPHDFFTLILGAKKG 513
              +   +     ++            +         L  + +   P DF + +L  ++ 
Sbjct: 442 LTRKGAGLSMQRGRWLWLPTPGLSPAGQQAKSNLALLLRGLKRDSRPWDFVSKVLLDQRY 501

Query: 514 -------------RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                         Q+  +      +   D  +     ++      L+  I   E+    
Sbjct: 502 GLPNPADQTIQAHTQRLATWLFVYAVRNGDGDIRQARLSQFLLREELRRRIG--EKLGDR 559

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                +   + V +MTVH++KGLE P + + D     +         +       P +  
Sbjct: 560 GLPPEARVLDAVSVMTVHSSKGLEYPAIHVTDVDDASYGANRPFAYDVRGLDLIPPEVLN 619

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                  + E N LLYV ++RA D L + + S        N+  
Sbjct: 620 SNGAEFMF-------------EERVERNNLLYVALSRARDYLYLYEISGWPRPVPLNRAA 666

Query: 681 WYDMVY 686
              +V 
Sbjct: 667 ATSLVK 672


>gi|23004878|ref|ZP_00047984.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 406

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 134/388 (34%), Gaps = 38/388 (9%)

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
            P  LF VGD KQ+IY F GA+    ++ +   + ++ +      +I +  +FRS   IL
Sbjct: 3   RPGALFLVGDPKQAIYRFRGADVSTYVQARDCIRAKSPDD-----VISVSTNFRSCRSIL 57

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
             VD  F      +G                 Q G V L           C    +   +
Sbjct: 58  AFVDNRFREVLQVEG-----------------QPGYVALDPFHDDHDRGPCVAALDIPAA 100

Query: 332 YFDS-LPQESSASILARRIAYTISNMIGTDTIFSNGK-KRVIQAKDILVLVRKRKDTPLI 389
             D     ++     A  +A   + +IG   +  +    R++QA DI +L     D    
Sbjct: 101 EGDGKRSADALRDAEAEAVADLCARLIGHRLVTCSRNGTRILQAGDIALLAPSGSDLWRY 160

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                       I V             I+DL+AL R +    D L+   +L+ P    +
Sbjct: 161 EEALEA----RGIPVSTQAGKGFFRRQEIQDLIALTRVLADPRDTLALGALLRGPAVGLT 216

Query: 450 EDDIFKICTQRHETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
           ++++  +           +  QK       A+      + VI  +  L   A   +PHD 
Sbjct: 217 DEELLDLVDALPRDPERPDARQKLRLGLDVAHVAHPVAREVIGRLQVLARQALGTTPHDI 276

Query: 504 FTLILGAKKGRQQFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQ-ELISELEQYPP 559
            +  + A + R     R           +D FL  +         +    + +  +    
Sbjct: 277 LSQAVDAIRLRPVVRQRHDGHAERALANVDIFLEMSRPYAVRGLRAFASAMKAAWDGRTR 336

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPV 587
           T++    A    V + T+H  +GLE PV
Sbjct: 337 TVEGRPDAQEAAVSLFTMHAFEGLEWPV 364


>gi|149922812|ref|ZP_01911236.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
 gi|149816355|gb|EDM75857.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1]
          Length = 1336

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 86/509 (16%), Positives = 174/509 (34%), Gaps = 60/509 (11%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVS---------LSMETGNPTILKKAQTL 53
              G    +   +    L  +    +  + +             ++E  N    +    L
Sbjct: 204 ATLGERWPDPAAVQAARLRFVATQWLDYLREMHGPVAVLFQACATLERPNERQRELQAKL 263

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNI----ITQEINKKSPDLKEKLKKSQDEFIK 109
              S+   +  RF  L +  L +     + +     ++++  +   L ++L+   +    
Sbjct: 264 VAVSRHFGL--RFEQLDAARLVRVAEEVRALTSTRASKKLGPQIGALLQQLRNIHNVVSS 321

Query: 110 IRDR-----------FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            R+R            +     +     L LA +    +  + ++  VL ++DL     D
Sbjct: 322 RRERPILPDPKRTLEADQAGHAEHLSRWLELADFAQRDWVASLRRRGVLRYDDLERFAAD 381

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL         + ++     H+L+DE QD S IQ  ++ +L E          +P  +F 
Sbjct: 382 LLADPRA----QDQLRGRYRHLLVDEYQDVSPIQARILEALVELC----GRADAPVRVFY 433

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD KQSIY F GA+P+   R +R             +++ L  + RS+  +     ++F
Sbjct: 434 VGDPKQSIYRFRGADPEVFQRAERT-------VDDGQAVVRLAENRRSSPSLGRFFAELF 486

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW--------- 329
             P    G    + T    R   + ++  V+   +V    D       +           
Sbjct: 487 --PPLFAGALPWANTAEFGRPFELARLRDVEDHARVPWDQDVTTVRAADRLPGLAVDSLL 544

Query: 330 --TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV--IQAKDILVLVRKRKD 385
                 +        +    R+A  +  ++   T+  +       I+A+D+ +LV +   
Sbjct: 545 RMRPSGELPEDADPLTRETERVAAHVYGLLCGATLGDDSSDDPPTIRARDVAILVPRW-- 602

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              +    R   +   I         L     ++DL+ L R    + D L+ V +L+ P 
Sbjct: 603 --QLAERYREALDARGIRADLAGGRGLLALPEVRDLINLVRCFADERDALAAVAVLRGPC 660

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFA 474
           F  S+  ++ +         V E      
Sbjct: 661 FGLSDLGLYVLGRWPGLDRRVQEADPDLP 689



 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 66/226 (29%), Gaps = 18/226 (7%)

Query: 730  IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                +   +          ++++    L                 +       G + H  
Sbjct: 1111 AGPSLASWRPSAGRSPWPVSELDWDMPLPARRPIVLEADPDPDPDTSEDPRELGELFHAA 1170

Query: 790  LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR----LLENPMMTTAMSCDS 845
            ++      +      +      +      K    L   + R    LL+ P+     +   
Sbjct: 1171 MERWDFQGDPPNAAALGELVGVHFGARSPKRRTQLARWLERTLALLLDTPLHAELCAARE 1230

Query: 846  YSEV-------SVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYK-THHHVP-QEIEH 895
              E+       ++    +  + D  + GRID +    +  + + +YK T       E+E 
Sbjct: 1231 RGELFHELDVDALIPSFDAERADNRVRGRIDLLWRDDEGAWCLLDYKVTSKVRSRAEMEE 1290

Query: 896  IPYTHIAQLSIYEKILKD-SYPNKSLVC---LLIYVSEPKVFIIPQ 937
            + + +  QL +Y + L+      + +      L      KV  + +
Sbjct: 1291 LQWEYGPQLLLYRRALQGWVLRGEKVRLGRFGLWLAPAGKVMWLEE 1336


>gi|317129740|ref|YP_004096022.1| UvrD/REP helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315474688|gb|ADU31291.1| UvrD/REP helicase [Bacillus cellulosilyticus DSM 2522]
          Length = 599

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 85/593 (14%), Positives = 174/593 (29%), Gaps = 151/593 (25%)

Query: 91  KKSPDLKEKLKKSQD------EFIKIRDRFNTYKMFKSTLAS--LTLAKYLNAHYEEAKK 142
           K    + + +    D          +           S++A     +A  +   YE   +
Sbjct: 122 KDRKQIYDNIVSELDYDPKKIRIEDMDKERTLSIDGISSVALEPFEVALRIAKEYEIRLR 181

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              ++DF +++     L++      ++R  ++ +   ILIDE QD      E++ +L   
Sbjct: 182 SKGMVDFIEIVKMATLLIQNH---YYVRKCLEAKFPWILIDEYQDLGKPLHEMVLALF-- 236

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                  H +   +FAVGD  QSIYSF+GA P  +    R               IEL  
Sbjct: 237 -------HKTNIKIFAVGDPDQSIYSFNGAIPDYLNELYRH---------PNILPIELFT 280

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS  DI+           +  GL+++    I  +  +                     
Sbjct: 281 NYRSHQDIIDA---------SLVGLNQEGRKYISGKDFKSEA------------------ 313

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                    +     +E         +   I   I             I  ++I +LV+ 
Sbjct: 314 --------EFHFVTCEEELDDQYNDVVNSIIPECIEKG----------IPLEEICILVQG 355

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS---FVC 439
            K+   I      L     I    + +F       +  L +   ++++ E++     F  
Sbjct: 356 GKEIKAIGN----LLAKTNIPFYVS-KFDFKRSDVVMWLESCAAWVINNENESFSKLFDF 410

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            +     +     + ++  +R +               +++ +     + E ++      
Sbjct: 411 WVSLYNRHIKVLTLTQLMQERKK-----------VYKMLAESRTFTNNLEEWLNFVIEEL 459

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                  +L + K           + +D L           Q++Y               
Sbjct: 460 K---LNSVLESSKVY--------PDELDNLTLLFREIKDQNQSNY-------------DL 495

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                     N+V + T H++KGLE  VV ++      F                     
Sbjct: 496 EKFANLGKAVNQVTVSTRHSSKGLEFEVVIMLGMEDGTFP-------------------- 535

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                           +         E  R+ +V ++RA     + +    + 
Sbjct: 536 --------------YYLNVNDPKKLSEDRRVFFVCVSRAKRICYLLRSKKYTR 574


>gi|187928595|ref|YP_001899082.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|241114173|ref|YP_002973648.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|187725485|gb|ACD26650.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|240868746|gb|ACS66404.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 573

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 92/679 (13%), Positives = 184/679 (27%), Gaps = 147/679 (21%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMET----GNPTILK-KAQTLQQASQTQCIEER 65
           +          P      +   K   L  +     G  T  K  A  LQ+  +       
Sbjct: 18  DLRLHCVAVACPGAGKTKTIATKAAILLADPACRVGAVTFNKEAATELQERIRALAGPAS 77

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
            + L +         Q      +    + +  +    +Q       D      +      
Sbjct: 78  KARLLAGTFHGLAFKQLTPKGCKQQDIANEGDQLALVAQALKEADLDWKEEAALAAIEAI 137

Query: 126 SLTLAK--------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +   +         L + Y++A  +N  LDF+D++    + +++  +S +         
Sbjct: 138 KMDFGRVPPGSVEERLYSAYQQALARNGKLDFQDMLCMAIEGMERGTISPY-------PF 190

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            H+L+DE QDT  +Q++ +               S   +  VGD+ QSIY F  A     
Sbjct: 191 THLLVDEFQDTDPLQYQWVAQHAR----------SGSIVTVVGDDDQSIYGFRAA---LG 237

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT-TIR 296
            R      K           + L  ++R  ++IL   D V    +        +      
Sbjct: 238 FRGMESFIKEF-----DARPVILGENYRCKSEILAAADNVIRNNKERIRKDLVAARGPGG 292

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
           H S R                   + + +     +  ++L     AS  A          
Sbjct: 293 HISFR-------------------RFDDEYAEAVNAVEALAASMRASKSA---------- 323

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                                +L R  +    +  + R     + +         +    
Sbjct: 324 --------------------AILARTNRILDPVEAVCRS----HGVKYFRASGKSILSRA 359

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
               +  L   I  +        +L          D+  + ++   +       +     
Sbjct: 360 EAALMCNLLELI-QKTKTNGLDAVLA--FAGVGAQDLKTLHSRIGPSLEQRPRKELVEMG 416

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                    + + + +   +      F+ L+L      +    R             +  
Sbjct: 417 LAESTADTYRELMKRLAEWRGLCDRKFYPLVLE--GVYEWMAQRAKA----------DTA 464

Query: 537 LRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            R    +Y  L  L     ++     +  +    + + + T+H +KGLE   V ++    
Sbjct: 465 KRAVTTTYDVLSRLNGPFSDRIAFLRRENNVPAADALILTTMHNSKGLEWDHVCIIRAEE 524

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            V  +                                       +KST+ E  RL YV M
Sbjct: 525 TVVPN---------------------------------------EKSTESEERRLFYVAM 545

Query: 656 TRASDQLIICKHSNTSNEK 674
           TRA D+L +         +
Sbjct: 546 TRARDRLEMSTAKKNPTSR 564


>gi|326204932|ref|ZP_08194785.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
 gi|325984981|gb|EGD45824.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
          Length = 1049

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 88/554 (15%), Positives = 163/554 (29%), Gaps = 64/554 (11%)

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y +  K++ +++  +       +L    ++   +   D +  ++ +DE QDT  +Q   
Sbjct: 543  EYSQELKEHNIINLSE-----YMILLNNVINENYKTLDDFKYKYLFVDEFQDTDDVQISS 597

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
               L                LF VGD KQSIY F GA      +               +
Sbjct: 598  FLGL---------QDIVGFKLFVVGDLKQSIYRFRGATIGAFDKLNYSYDT--------W 640

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
                L  ++R+   +L   D +F+       L   S T     +  +         E  +
Sbjct: 641  EEYSLNTNYRTDRRLLEKYDDIFAQIGRQGYLPFVSKTDNSKNNDSLNSDLEFDFSESEL 700

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
             +         + +   FD                  I +           KK   +   
Sbjct: 701  IRVIDCDEDTVDLYNKLFD-----------------EIEHQRDLMEKLGREKKLNREEAT 743

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
            + +LVR+      I  + +  K    + V       L       D   L   + +  + +
Sbjct: 744  VAILVRENWQ---IESIIKEAK-KRGVRVETQVGGDLFQLSPAIDFYKLVLALNNPLEPI 799

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                ++ S     +  DI  +  +  E + +Y           +        I  L +  
Sbjct: 800  YLFNLICSNNIGITV-DIQGLYKKTKEQQIIYLIDILDQYYLATLQMSWRDIILSLQN-- 856

Query: 496  QFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFTLRNEQNSYSSLQELISE 553
                       I    K    +      +       +  L   +++    Y +L  + + 
Sbjct: 857  --NPVLMVLKRIFDKCKPWLNYSDNVDEQRFYKVNYELVLEKIIKSHSVDYLTLNYICNS 914

Query: 554  L--------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L        E+    I  +       V   T+H +KGLE   V L  T  ++  +K    
Sbjct: 915  LKINITTEQEEMAREIIDSRDEVKCTVLCTTIHKSKGLEYGCVMLPYTYHRIDDYKKADL 974

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              I             +  +K + N  +           +E  R+LYV +TRA    +  
Sbjct: 975  DVIYYEGKLG----YSVKINKKKYNNNNYNRNFEISQRIQEEARVLYVALTRAIHNFV-- 1028

Query: 666  KHSNTSNEKKSNQR 679
               N S E   N  
Sbjct: 1029 WFRNVSEEAGLNWS 1042


>gi|305679858|ref|ZP_07402668.1| HRDC domain protein [Corynebacterium matruchotii ATCC 14266]
 gi|305660478|gb|EFM49975.1| HRDC domain protein [Corynebacterium matruchotii ATCC 14266]
          Length = 693

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 107/801 (13%), Positives = 201/801 (25%), Gaps = 196/801 (24%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A         Q        L            +++      +   D+  +++ 
Sbjct: 81  ARTFHAAAMRQLAYFWPQVAGNLSWQLLDNKFPLVGRAARSLGIDSSVENVRDILSEIEW 140

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
           ++   I   +++      + T     +   +   YE+AK         D+++   D L  
Sbjct: 141 AKSRLIS-PEQYVAETAHRHTPQPAPIVAQIYQRYEDAKIN------PDVMLLDFDDLLL 193

Query: 163 R-----DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
                 + S  I  +   +    ++DE QD + +Q  V+ +   +             + 
Sbjct: 194 HVAGAIENSTAIAEEFRAQYCTFVVDEYQDVTPLQQRVLSAWLGN----------RDDIT 243

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD  Q+IYSF GA P+ +L   R             ++++L   +RST  I  + + +
Sbjct: 244 VVGDANQTIYSFTGASPEFLLDFSRTYPH--------ATVVKLQRDYRSTPQITDLANTI 295

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            S           S T ++ R         V                             
Sbjct: 296 ISQATGR-----VSGTKLQLRGMLPAGPAPV---------------------------FA 323

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                   AR +A  I N+I             +   +I VL R    +           
Sbjct: 324 GYDDEPAEARAVAGHIKNLIEQG----------VPPAEIAVLYRINAQSAPFEQAL---- 369

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            D  I               I+  ++    +  +E+           L      ++ +  
Sbjct: 370 ADAGIVYQVRGGEEFFKRPEIRQAISTLIRLSQREEHQPPD------LIGPRIHELVE-S 422

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                  T  E     A       Q +++   EL       +       +          
Sbjct: 423 ALAPIGLTPQEPEGAQARERWQSLQALVELSKELGKATPDLNLIGLLHQLHQRDT----- 477

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
                                       ++Q                       V + ++
Sbjct: 478 -----------------------NKHPPTMQG----------------------VTLASL 492

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE   VFLV          H  K  +                             
Sbjct: 493 HAAKGLEWDAVFLVGLTDGSLPITHAIKAGVT---------------------------- 524

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  EE  RL YVG+TRA   L     +      + +++    +            K
Sbjct: 525 -----AIEEERRLFYVGVTRARKHLFHSWSAARQEGGRHSRKRTRFL----DDIIPETNK 575

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
           I       +    A       P     ER            + +    P   D      L
Sbjct: 576 ITTAKPAKRHRRPARCKVCGSPLVDTPER-----------ILGRCNNCPSDADPQIFETL 624

Query: 758 NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                      N+ + +  +    +      + + + T                N     
Sbjct: 625 RVWRAGVAKTNNIPAYIVFSDATLQ-----AIAEALPTNTAE--------LLKINGIGQV 671

Query: 818 AKEY--KNLLLSITRLLENPM 836
             E   ++LL ++ + L++  
Sbjct: 672 KVERYGQDLLETVAQFLDDDE 692


>gi|226365852|ref|YP_002783635.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus opacus B4]
 gi|226244342|dbj|BAH54690.1| ATP-dependent DNA helicase UvrD2 [Rhodococcus opacus B4]
          Length = 708

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 93/674 (13%), Positives = 183/674 (27%), Gaps = 167/674 (24%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
              + L+        +  + LL   F          +      +   DL  +++ ++   
Sbjct: 98  AALRQLRYFWPQVVGDTEWRLLDRKFAVVSSAA-GRVGLSTSTESIRDLASEIEWAKASL 156

Query: 108 IKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLII-------NTNDL 159
           I   D        +            +   YE+ K +      + +++       +T   
Sbjct: 157 IAPEDYPRAVAKLRREAPVDAAKVAEVYHGYEQLKARGQ----DGMLLDFDDLLLHTAAA 212

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L++      +  +        ++DE QD + +Q  V+ +   +             L  V
Sbjct: 213 LEEHSA---VAEEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGE----------RDDLTVV 259

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF GA P  +L   R           + +++ L   +RST +++++ ++V  
Sbjct: 260 GDANQTIYSFTGATPNYLLDFSRRFP--------EATVVRLERDYRSTPEVVSMANRVIG 311

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                      + T ++    R        +                           + 
Sbjct: 312 AARGR-----IAGTRLQLIGQRDSGPEPSFV---------------------------EF 339

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A  +A TI  +I + T           A +I VL R    + +       L   
Sbjct: 340 DDEPAEAAGVARTIKRLIASGTP----------AAEIAVLYRINAQSEVHEQALTKL--- 386

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I               ++  +A  R    ++D           L +    D+  +   
Sbjct: 387 -DIPYQVRGGEGFFTRTEVRQAVAALRQAAGRDD-----------LPDAVGADLVTLVRA 434

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                 + +     A       +     +  L+ +                         
Sbjct: 435 VLVPLGLTDAEPAGAQ-----ARERWASLSALVALT----------------------EE 467

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           +   +    LD  L                   EL                 V + ++H 
Sbjct: 468 QLTQDPELTLDALL------------------RELSLRAEARHPPVVQG---VTLASLHA 506

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFLV         +H+                              D     
Sbjct: 507 AKGLEWDAVFLVGLTDGTLPIQHVLG----------------------------DSNSAP 538

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            ++  EE  RLLYVG+TRA + L +    + +   + ++R    +      +    +   
Sbjct: 539 DEAAVEEERRLLYVGVTRAREHLQMSWALSRNEGGRKSRRRSRFLHGLIPEDSPASRIAA 598

Query: 700 LTNSINKDEWIAYE 713
              S  K       
Sbjct: 599 PVKSNKKRPRCRLC 612


>gi|76799809|ref|ZP_00781872.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
 gi|76584837|gb|EAO61532.1| exonuclease RexA [Streptococcus agalactiae 18RS21]
          Length = 416

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/417 (15%), Positives = 133/417 (31%), Gaps = 65/417 (15%)

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHI-----------MPSLNDDPGIPIWIPQSKSR 628
           +KGLE   VF+++   +         + +               +D     +   +    
Sbjct: 1   SKGLEFKYVFILNIDKKFSMVDITSPLILSRNQGIGIKYVDDMRHDLEEEILLAVKVSME 60

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT------------------ 670
                   + L+ +T  E  RLLYV MTRA  +L     ++                   
Sbjct: 61  TLPYHLNKRELRLATLSEQMRLLYVAMTRAEKKLYXVGXASQTKWADHYDLVSENNHLPL 120

Query: 671 -SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL----E 725
            S E     + W   V++++   E    I   +     +      +   P N        
Sbjct: 121 ASRETFVTFQDWLLAVHETYKKQELFYDINFVSLEELTDHHIGMVNPSLPFNPDNKVENR 180

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI----------------------D 763
           + E I + +   +  +++    K  I  P +  PS +                       
Sbjct: 181 QSEDIVRAISVLESVEQINQTYKAAIELPTVRTPSQVKKFYEPILDIEGVDVMETITKTS 240

Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
              K    S          G  +H+L+Q I      K ++   +    NA+   + +   
Sbjct: 241 VDFKLPDFSTSKKQDPAALGSAVHELMQRIEMSSHVKMEDIQKALTEVNAE--TSVKAAI 298

Query: 824 LLLSITRLLENPMMTTAMSC---DSYSEVSVSG--KINCPKKDIIISGRIDQISISQQNI 878
            +  I    +   +   +       + E   +   +     +  ++ G ID   + +  I
Sbjct: 299 QIEKINYFFQETSLGKYIQEEVEHLHREAPFAMLKEDPESGEKFVVRGIIDGYLLLENRI 358

Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            +F+YKT   V      +   +  Q+++Y + LK SY  + +   LI +   ++ ++
Sbjct: 359 ILFDYKTDKFV--NPLELKERYQGQMALYAEALKKSYEIEKIDKYLILLGGKQLEVV 413


>gi|19552001|ref|NP_600003.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389664|ref|YP_225066.1| helicase, UVRD/REP family [Corynebacterium glutamicum ATCC 13032]
 gi|21323541|dbj|BAB98168.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324999|emb|CAF19480.1| HELICASE, UVRD/REP FAMILY [Corynebacterium glutamicum ATCC 13032]
          Length = 1016

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/608 (12%), Positives = 176/608 (28%), Gaps = 78/608 (12%)

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL-GRFILS 430
              +I V+VR      +I  + R L     + V  +   ++     I   M L  R +  
Sbjct: 338 SWSEIAVIVRS---AGMIAPIWRTLLA-AGVPVHISPTDVVLAEQRIVAAMILGLRALTE 393

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV------ 484
             + +    +L  P+       + ++     + E      ++      S           
Sbjct: 394 SLNAIELEDLLLGPIGGADPVTLRRLLRGLRQAEMKMGGQRRAIEVLRSLLAESDAEMLG 453

Query: 485 ------IKYIHELI--------HIAQFCSPHDFFTLILGAKKGRQQFIS------RFGNE 524
                 +  +  +          +A+  S  +    +  A        +        G++
Sbjct: 454 FLTDRELNLLERVRSVLEAGREALAEHGSIEEVLWALWSATDLSNSLSAISLRGGASGSQ 513

Query: 525 VIDVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVH 578
               LD      +      E+   + ++  I  + +                 V ++T H
Sbjct: 514 ADRDLDAMMALFDAAGDYVERYPSAGVRSFILHISEQELPTGMRERRGAIPEAVEVLTAH 573

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
              G E   V + +     +         +      D               I  D+I  
Sbjct: 574 ATTGREWKRVIVAEVQEGSWPSLGETGTLLGQEEFVDL----------VDEGIDPDIIIS 623

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                  E  RL Y+  TR+++ L++   ++  +++      + +++       E  +  
Sbjct: 624 RSAERLAEERRLFYLATTRSTESLLVTAVNSPDSDEVREPSRFLELLSQPIVVLEGEEAS 683

Query: 699 KLTNSIN--------KDEWIAYEWSTHHPENTPLEREETIKQLMDE-------QKIPKKL 743
            +                        + P +   ++       + E             L
Sbjct: 684 AIAEPEEIGHRLLSIPAMVAELRRVVNDPRDPRRKQAARQLSRLAEAGIPGANPAEWTNL 743

Query: 744 FSPIKNDI--NEPYILNPSTIDTKGKTNLESLLSDNQ-------TFNRGLIIHKLLQVIF 794
            +P  ++        L+PS I+      L ++L              +G ++H   + + 
Sbjct: 744 RTPSTDEELIKGAVSLSPSRIEQLLNCPLRAVLDRLDSEEETPIAMLKGTLVHAFAEAVA 803

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
              +        +         P+   ++  ++  R+L         S   ++EV     
Sbjct: 804 GGVDAALAEEKVTSAYMQLANVPSWSRESTEIAFRRILSRTDTWLKTSRADFTEVGTEMD 863

Query: 855 INCPKKD-IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           ++    D + I GR+D++  ++   + + ++KT      +I         QL  Y+  L 
Sbjct: 864 VSVTIDDSVSIRGRMDRLERNKSGELVVVDFKTGKT---QIAAKDMGDHPQLFAYQLALS 920

Query: 913 D--SYPNK 918
               + +K
Sbjct: 921 KGVLHGDK 928


>gi|213022136|ref|ZP_03336583.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 321

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 23/218 (10%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+  Q+E
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYE 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                   VGD+ QSIYS+ GA P+ ++   +            
Sbjct: 226 LVKLLVGQ----------RARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA-------- 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             +I+L  ++RS+  IL   + + +   +       S 
Sbjct: 268 LQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSE 305


>gi|163846307|ref|YP_001634351.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222524068|ref|YP_002568539.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
 gi|163667596|gb|ABY33962.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl]
 gi|222447947|gb|ACM52213.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl]
          Length = 878

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 86/671 (12%), Positives = 185/671 (27%), Gaps = 90/671 (13%)

Query: 52  TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR 111
            +   +          +++    TQ    +   I     +       +  +   +  ++R
Sbjct: 162 EIVTRAAGLDPSSAAEVVTGHLNTQPSASRHRAI-----EALRPFFNRFSEELLDPAELR 216

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            R ++    + +   + L   L   Y ++ ++    DF  L      +L++   +  +  
Sbjct: 217 PRLSSLVRGEFSPQDVDLLLALYEGYLQSLREAGRTDFALLQREAFQVLQEFQGAGGV-- 274

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                  H+++DE QDT+ IQ  +   L E              L  VGD+ Q++Y F G
Sbjct: 275 -----FRHVIVDEYQDTNTIQERIFFRLAE----------GTGNLCVVGDDDQALYRFRG 319

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A  +  ++     QK      Q    I L +++RS + I+    +  +            
Sbjct: 320 ATVENFVQFPARCQKYLN---QTPRTISLEINYRSRSHIVETYGRFINHTNWQDRDGMVY 376

Query: 292 TTTIRHRSSRIG-QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                 R+ R       V        Q   +                    A +     +
Sbjct: 377 RIPKNIRAYRNDLAPAVVASTPAEPEQACQEIARFVRRLIETGKVQNPNQIAFLYPSLKS 436

Query: 351 YTISNMI-------------GTDTIFSNGKKRVIQAKDILVLVR-----KRKDTPLITFL 392
                MI                      + R +    + +  R     +  D       
Sbjct: 437 EQAKRMIAALKAEGLDVYAPRAGRFLEVDEARDVLGIFLAIFGRPTIEGRGHDLRTFEVY 496

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALG-------------RFILSQEDDLSFVC 439
              L+         +            ++                 R++  Q  D + + 
Sbjct: 497 LTALQTRADELQQTDPLLKQFIQNRRDEIQRALSDYAALQAVLTRNRWLPDQLYDPASMK 556

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
              +     SE     + +   +   +    +          +        L+ +     
Sbjct: 557 RALADAPGLSETGHRLVSSAYLDRLVLLRASEGRPLSLEYVIRRATSLDWNLLDLFYQLM 616

Query: 500 PHDFFTLILGA------------KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             + F  +                    Q+++RF  E +++L   +    +     + S 
Sbjct: 617 GFEHFKAMFDRAERQGDEGAVANLGLLTQYLARFVQERVNILTAAILSEHKFSGMFFGSF 676

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  LE+     +         +  +T+H AKGLE PVV L +   +           
Sbjct: 677 IFALYRLEEGEREDEENPFPRG-RIPFLTIHQAKGLEFPVVVLGNLDKR----------- 724

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                 D     I        +    + +  +         R+ YV ++RA + LI+   
Sbjct: 725 ------DHGAPLIERLVRPLLSRPAGEPLDRMTAFDIA---RMFYVALSRAQNLLILAHF 775

Query: 668 SNTSNEKKSNQ 678
           S     +    
Sbjct: 776 SGRGQRQDEAF 786


>gi|120556560|ref|YP_960911.1| UvrD/REP helicase [Marinobacter aquaeolei VT8]
 gi|120326409|gb|ABM20724.1| UvrD/REP helicase [Marinobacter aquaeolei VT8]
          Length = 774

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 109/720 (15%), Positives = 208/720 (28%), Gaps = 105/720 (14%)

Query: 14  ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
           E   + +       + +I  Y ++ +           +        + + E+     ++ 
Sbjct: 93  ERKLQSVCSQSGLALPEIRTYHAMGLRLY---RRFVREGYLPGFSEKILTEQEIGFQAWL 149

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           LT++  P+   +  EI +   D  E      D                           L
Sbjct: 150 LTRRLAPE--ELADEIRRNKKDFVETATGFIDRVKTGLAPAEVVFEELGYSDKHRYLIDL 207

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +E+ +K    + + D++      + +      ++  +  +++ IL+DE QDT+ IQ 
Sbjct: 208 FHSFEQWRKSESRISYADMLYEPVMAIHQNP---PLQRLVGNKMDLILVDEYQDTNEIQH 264

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAG 252
            ++R +  D             +  VGD  Q+IY F GA P+ +LR      +       
Sbjct: 265 LLLRYVAGD----------RARVTVVGDPDQTIYEFRGARPEFILRKFSDEFESPLEQ-- 312

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                  L  +FR    +  + + +       + +   S          + Q        
Sbjct: 313 ------TLSYTFRYGHRVALLANHLICHNTGRRDVMCHSHPGTPDTEIHLHQAENDGNQV 366

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
             + Q  +     Q +      S        +LAR+I Y I      D        R +Q
Sbjct: 367 LSILQGLAPEQQSQSAILFRVWSQSVPIELKLLARQIPYRI------DAGKGALFSREVQ 420

Query: 373 AKDILVLVRKRKDTPLIT-FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           A   L+LV  R+   L         +   +   VG         L   +L  L RF+ + 
Sbjct: 421 AVQALLLVVTRRLDKLAENDRLDIARQILRFPHVG---------LKEPELENLARFLAA- 470

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            D      +L                         ++ +   A   + K   V++ +   
Sbjct: 471 FDTGWHERLL----------------------SLDFDALAPMAARKLKKLGEVLQQLDRY 508

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                         + L               E ID +  F ++    E N+  +L    
Sbjct: 509 QGPVAGLITVYAEHMDLYEGIRSLALTHDSAEERIDTIQGFRDYLKSLEVNADGAL---- 564

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
              +      ++A       V + T+H  KGLE PVV +     +   +           
Sbjct: 565 ---DHLSLLKQQASEHRDEGVLLSTIHRTKGLEWPVVIIPGLQEKYLPYSPRP------- 614

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                    +   ++  E   RLLYVGMTR    L +      +
Sbjct: 615 -------------------------QDDARALLESERRLLYVGMTRTRHHLHLITRPTPA 649

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
           +   S  +     V +      +     L       +          P +      E ++
Sbjct: 650 SPHLSGDQGPSRFVSELCFGLAQELGSALDTGTAPTDQPLRLDHPLTPVSLRYAEREGVQ 709


>gi|111023344|ref|YP_706316.1| helicase [Rhodococcus jostii RHA1]
 gi|110822874|gb|ABG98158.1| helicase [Rhodococcus jostii RHA1]
          Length = 712

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 94/726 (12%), Positives = 189/726 (26%), Gaps = 181/726 (24%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
                +           ++      +     G    L       Q             L 
Sbjct: 49  RRIAHLVASGHVAAGQVLAVTFTARAAGEMRGRLRSLGIGDGGAQVQARTFHAAALRQLR 108

Query: 71  SFFLTQKFTPQKNIITQEIN---------------KKSPDLKEKLKKSQDEFIKIRDRFN 115
            F+       +  ++ ++                 +   DL  +++ ++   I   D   
Sbjct: 109 YFWPQVIGDTEWRLLDRKFAVVSSAAGRVGLSTSTESVRDLASEIEWAKASLIAPEDYPR 168

Query: 116 TYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLII-------NTNDLLKKRDVSA 167
                +            +   YE+ K +      + +++       +T   L++     
Sbjct: 169 AVAKLRREAPVDAAKVAEVYHGYEQLKARGQ----DGMLLDFDDLLLHTAAALEEHSA-- 222

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +  +        ++DE QD + +Q  V+ +   +             L  VGD  Q+IY
Sbjct: 223 -VAEEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGE----------RDDLTVVGDANQTIY 271

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF GA P  +L   R           + +++ L   +RST +++++ ++V          
Sbjct: 272 SFTGATPNYLLDFSRRFP--------EATVVRLERDYRSTPEVVSMANRVIGAARGR--- 320

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
              + T ++    R        +                           +       A 
Sbjct: 321 --IAGTRLQLIGQRDSGPEPSFV---------------------------EFDDEPAEAA 351

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            +A TI  +I + T           A +I VL R    + +       L     I     
Sbjct: 352 GVARTIKRLIASGTP----------AAEIAVLYRINAQSEVHEQALTKL----DIPYQVR 397

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                     ++  +A  R    ++D           L +    D+  +         + 
Sbjct: 398 GGEGFFTRTEVRQAVAALRQAAGRDD-----------LPDAVGADLVTLVRAVLVPLGLT 446

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +     A       +     +  L+ +                         +   +   
Sbjct: 447 DAEPAGAQ-----ARERWSSLSALVALT----------------------EEQLTQDPEL 479

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            LD  L                   EL                 V + ++H AKGLE   
Sbjct: 480 TLDALL------------------RELSLRAEARHPPVVQG---VTLASLHAAKGLEWDA 518

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFLV         +H+                              D      ++  EE 
Sbjct: 519 VFLVGLTDGTLPIQHVLG----------------------------DSNSAPDEAAVEEE 550

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RLLYVG+TRA + L +    + +   + ++R    +      +    +      S  K 
Sbjct: 551 RRLLYVGVTRAREHLQMSWALSRNEGGRKSRRRSRFLHGLIPEDSPASRIAAPAKSTKKR 610

Query: 708 EWIAYE 713
                 
Sbjct: 611 PRCRLC 616


>gi|224371767|ref|YP_002605931.1| putative ATP-dependent DNA helicase [Desulfobacterium autotrophicum
            HRM2]
 gi|223694484|gb|ACN17767.1| putative ATP-dependent DNA helicase [Desulfobacterium autotrophicum
            HRM2]
          Length = 1740

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 67/515 (13%), Positives = 151/515 (29%), Gaps = 77/515 (14%)

Query: 3    NRFGLSLNESYELIYKDLWPLPY-------FQVSDINKYVSLSMETGNPTILKKAQTLQQ 55
             R GL   ++      D +   Y       F         +++ E     I       Q+
Sbjct: 1060 ARLGLEKIKTALGFVSDYFSSSYDTFIQQYFPREKTLIQTAMTAEAYKKIIQSLEDHTQE 1119

Query: 56   ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK----LKKSQDEFIKIR 111
            A      E+   +L+          +  +       K+  +       L  +    I++R
Sbjct: 1120 AIVAASPEKNILVLAGP---GSGKTRTIVHRCAWLIKAKSIDPASILVLCFNHQAMIELR 1176

Query: 112  DRFNTYKMFKSTLAS----LTLAKYLNAHYEEAKKK-----NCVLDFEDLIINTNDLLKK 162
             R        +   +       A  L      AK+         + F+ +I    ++L  
Sbjct: 1177 KRIRALTGRSANAVTAMTYHGFAMRLTGRSFLAKQTGPASGKKTMGFDAIIDEAVEMLNG 1236

Query: 163  RDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
                     +  R  +  +  ++L+DE Q+    Q+  I +LT      +    +  ++ 
Sbjct: 1237 EREIVGIDQSETRQILLAQYRYLLVDEYQEIDDRQYRFISALTGRL---EQDRDTRISIM 1293

Query: 218  AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            AVGD+ QSIY F  A  + + + ++               + L  ++RS   I+   +  
Sbjct: 1294 AVGDDDQSIYGFRNANLRFIKQFQQDYG---------AKTVYLVENYRSAYPIVQASNAF 1344

Query: 278  FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
             ++ +N                             ++  +  SQ +      T     + 
Sbjct: 1345 IALNKNRM---------------------KTDWPCRINGKRRSQEHEAHTIKTHELVQVV 1383

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q    +  A  +A  I  ++  +              D+ V+ RK    P +    R   
Sbjct: 1384 QVKDIASQAVFVAQKIKQLMADNPEMD--------YNDVAVVARKGMAYPSL-VSLRMAL 1434

Query: 398  NDYKIS----VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                I     +     F L     I+++    +++ + +++      L+  + +  +   
Sbjct: 1435 AREGIPFCHSIKSGAGFPLF---RIREIQVFLQYLENHKNESRTPLDLRQAVLDQFKQKN 1491

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                      E+                   ++ +
Sbjct: 1492 PWTDQIGQILESWCAVNSDMEISIDRARAFFLETL 1526


>gi|302536760|ref|ZP_07289102.1| ATP-dependent DNA helicase [Streptomyces sp. C]
 gi|302445655|gb|EFL17471.1| ATP-dependent DNA helicase [Streptomyces sp. C]
          Length = 840

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 63/541 (11%), Positives = 142/541 (26%), Gaps = 85/541 (15%)

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYE---------------YIQKFANCGISKFQH 483
            +L SPL      D+ ++     + E                      +        +  
Sbjct: 194 ALLTSPLGGMDAADLRRLGRALRDEERAAGVAVPAPSDVLLARALAEPERLTAHDPAYAR 253

Query: 484 VIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDE- 531
             + +  L+   +       +  +    +       Q+   +       G      LD  
Sbjct: 254 GAQRLGLLLRKTRELLQGGGTAEEALWTLWDGTPWPQRLERQARRGGTGGRNADRDLDAV 313

Query: 532 ---FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESP 586
              F N     E+         + +LE            +   + VR+MT H +KGLE  
Sbjct: 314 CALFDNAARAEERTGGRGALNFLEQLEAEDIAADTLTGKAVRTDAVRLMTAHRSKGLEWG 373

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           +V +      ++     +   +        G+   +                   +   E
Sbjct: 374 LVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPG----------------ALLAE 417

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YV  TRA  +L++      + +     R   ++         R ++     ++  
Sbjct: 418 ERRLFYVAATRARHRLVVTAVKAPAEDGDQPSRFLTELGVTPKDVTGRPRRPLAVPALVA 477

Query: 707 DEWIAYEWSTHHP-----------------ENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
           +           P                 ++                       +    
Sbjct: 478 ELRATTVDPDASPALRDAAARRLARLAALTDDEDRPLVPAAHPQRWWGLYEPTASTVPLR 537

Query: 750 DINEPYILNPSTIDTKGK---------TNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEH 799
           D + P  L+ S +D               +++          G ++H L  +V       
Sbjct: 538 DRDRPVTLSGSALDQLANTCSLQWFLGREVKADAPSTAAQGFGNVVHVLADEVASGRTPA 597

Query: 800 KRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                +            +A     +E  N   ++ R L              +E     
Sbjct: 598 DLAVLMERLDSVWDALAFDAPWKSRQEKDNARAALERFLRWHTTDRGGRSAVATEHDFDV 657

Query: 854 KINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            ++     + I G +D++        ++ ++KT    P   +        QL++Y+  ++
Sbjct: 658 TLDAGGYAVRIRGSMDRVEADPQGRAYVVDFKTGKGAPTREQVAR---HPQLAVYQLAVR 714

Query: 913 D 913
           +
Sbjct: 715 E 715


>gi|207722748|ref|YP_002253183.1| dna helicase superfamilyIhelicase plasmid protein [Ralstonia
           solanacearum MolK2]
 gi|206587930|emb|CAQ18511.1| putative dna helicase superfamilyIhelicase plasmid protein
           [Ralstonia solanacearum MolK2]
          Length = 519

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 89/636 (13%), Positives = 186/636 (29%), Gaps = 137/636 (21%)

Query: 43  NPTILKKAQTLQQ-ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKS--PDLKEK 99
              +  + + L   AS+++ +   F  L+   LT K   Q++I  +          LKE 
Sbjct: 8   ATELQDRIRALAGPASKSRLLAGTFHGLAFKQLTPKGCKQQDIANEGDQLALVGQALKEA 67

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
               ++            KM    +   ++ + L + Y++A  +N  LDF+D++    + 
Sbjct: 68  ELDWKE--DAALAAIEAIKMDFGRVPPGSIEERLYSAYQQALARNGKLDFQDMLFMAIEG 125

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           ++K  ++ +          H+L+DE QDT  +Q++ +               S   +  V
Sbjct: 126 MEKGTIAPY-------PFTHLLVDEFQDTDPLQYQWVAQHAR----------SGSIVTVV 168

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIY F  A      R      K           + L  ++R  ++IL   D V  
Sbjct: 169 GDDDQSIYGFRAA---LGFRGMESFIKEF-----DARPVILGENYRCKSEILAAADNVIR 220

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
             ++       ++                                      ++     + 
Sbjct: 221 NNKDRIRKDLVASRG-------------------------------PGGHIAFQRFDDEY 249

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
           + A      +A ++                        +L R  +    +  + R     
Sbjct: 250 AEAVHSVEALATSMRAGKSA-----------------AILARTNRILDPVEAVCRS---- 288

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
           + +         +        +  L   I  +        +L          D+  + ++
Sbjct: 289 HGVKYFRASGKSILSRAEAALMCNLLELI-QKTKTNGLDAVLG--FAGVGAQDLKTLHSR 345

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
              +       +              + + + +   +      F+ L+L      +    
Sbjct: 346 IGPSLEQRPRKELVEMGLAESTADTYRELMKRLAEWRGLCDRKFYPLVLE--GVYEWMAQ 403

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVH 578
           R             +   R    +Y  L  L     ++     +  +    + + + T+H
Sbjct: 404 RAKA----------DTAKRAVTTTYDVLSRLNGPFSDRLAFLRRENNVPAADALILTTMH 453

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE   V ++     V  +                                      
Sbjct: 454 NSKGLEWDHVCIIRAEETVVPN-------------------------------------- 475

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +KST+ E  RL YV MTRA D+L +         +
Sbjct: 476 -EKSTESEERRLFYVAMTRARDRLEMSTAKKNPTSR 510


>gi|268315891|ref|YP_003289610.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
 gi|262333425|gb|ACY47222.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252]
          Length = 1032

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 71/511 (13%), Positives = 146/511 (28%), Gaps = 102/511 (19%)

Query: 6   GLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETGNPTIL------------ 47
           GL   +     Y D        P      +   +   L  E G                 
Sbjct: 474 GLDPEQQAAATYTDGPVLVVAGPGTGKTRTLTYRLAYLIKERGVDPAQCLAVTFTRRAAD 533

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
           +    LQ        +   +      L    T    +   +  + + + +++        
Sbjct: 534 EMRTRLQALLGEAAADVTVTTFHGLGLELLQTYGDRLGLPQPLRVATEAEQRAVLEAQGL 593

Query: 108 IKIRDRFNTYKMFKSTL---ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
              + +    ++              +     Y+ A +++  +D++DLI  +  LL+   
Sbjct: 594 SPTQAQRLLPRISYRKRTGQPGDERLETTLQAYDRALRESGRVDYDDLIRLSVQLLEDHP 653

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +     +    I +DE QD    Q+ ++R L  +             LF +GD  Q
Sbjct: 654 D---VADACRERFRWIAVDEFQDVDANQYRLLRLLAPEADA---------RLFVIGDPDQ 701

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           +IY F G + +  L+      K           + L  ++RST  IL            A
Sbjct: 702 AIYGFRGGDVRCFLQFTSDYPK--------TRQVLLRQNYRSTQAILE-----------A 742

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                   + +  R     + G V +                         +    S   
Sbjct: 743 AARMMARASLVPDRELVAVRSGGVPV------------------------EVVACPSERS 778

Query: 345 LARRIAYTISNMIGT------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            A  +A TI  +IG       D+  ++G++R     D+ VL R            + +  
Sbjct: 779 EAIFVAETIEKLIGGTSYYALDSGRADGEERSYTFGDVAVLYRTEAQAA----ELQEVLA 834

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              I        +L +   ++ L+A  +   + +  L+              + + +   
Sbjct: 835 QAGIPYQKRSHRLLAELPEVEALLAYLQ--ENPKGPLA--------------ERLERWAA 878

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              E E +   ++  A       +     + 
Sbjct: 879 TTSEREALLGVLRALAAQCGDDLEAFRNELA 909



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 62/257 (24%), Gaps = 52/257 (20%)

Query: 458  TQRHETETVYEYIQKFANCGISKFQHV--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                  E + +    +          +  ++ +   +         +           R+
Sbjct: 825  QAAELQEVLAQAGIPYQKRSHRLLAELPEVEALLAYLQENPKGPLAERLERWAATTSERE 884

Query: 516  QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                             L             L+   +EL                 V ++
Sbjct: 885  ---------------ALLGVLRALAAQCGDDLEAFRNELALRSEADLWDA--RAEGVSLL 927

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            T+H AKGLE  VVF+V     +    +  ++                             
Sbjct: 928  TLHAAKGLEFRVVFIVGCEEGLLPLTYDGRVDP--------------------------- 960

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    + E  RLL+VGMTRA ++L +          +         + D      R 
Sbjct: 961  ------EQEAEERRLLFVGMTRAQERLFLTHAQRRRWMGRVRTPEPSRFLADLPARFVRR 1014

Query: 696  KKIKLTNSINKDEWIAY 712
            +   +  S      +  
Sbjct: 1015 RTHTVRRSPTGGRQLEL 1031


>gi|218886850|ref|YP_002436171.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757804|gb|ACL08703.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1244

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 106/695 (15%), Positives = 189/695 (27%), Gaps = 136/695 (19%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             + +  + + + +       L+   G    L +  TL            F        T 
Sbjct: 603  ARRILAVTFTRRAAAEMDERLATALGEDAPLPRTDTLHAL--------AFEYWHRATPTP 654

Query: 77   KFTPQKNIITQEINKKSPD-LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 +    +   + +PD   ++L+++ +     R++  +                L A
Sbjct: 655  PVLLSEEAARRVFAEANPDEPAQRLREAWEAIGVCREKMRSCLAEH---------APLLA 705

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y E K    + D+ DL+    D ++                 H+L+DE+QD S +Q  +
Sbjct: 706  RYTEQKAAWNLADYTDLLEFWLDQMQNNI--------YASPWRHVLVDEIQDLSPLQLTL 757

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +R+L      G          F +GD  QSIY F GA        +              
Sbjct: 758  VRALAPRGGAG---------FFGIGDPDQSIYGFRGAHGDVAAFLREAWP--------DL 800

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            S++ L  ++RS+A IL              GL +  +     R++R    G + L+E   
Sbjct: 801  SVVALEENYRSSARILDFA----------GGLMQGRSACGPLRAAR-DMPGELHLFEAPT 849

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
            ++ ++    +Q         +   S + + A         ++                 D
Sbjct: 850  AEGEAAWIGEQIRGL-----IGATSHSLLDAGHGRTRRGTVLDEG---------GFSPGD 895

Query: 376  ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT-DHLAIKDLMALGRFILSQEDD 434
            I VLVR +     +    +     + +     +      D      L A GR +      
Sbjct: 896  IAVLVRVKS----LIPQLQRTLTRFGVPCAVPEAEAFWADQRVALILGAAGRMLGIGSTS 951

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                  L       S   +          + +      F                E    
Sbjct: 952  SPAGPAL---PAGLSHRRLVAEGVHPSLADRLGLDASPFPMHRGGDAADNAHGAPEAAAA 1008

Query: 495  AQFCSPH---------DFFTLILGAKKGRQQFISRFGNEVIDVLDE------------FL 533
                +           +     +    G             D   E              
Sbjct: 1009 TGSPAVSGSPDGSDGPEASGAAIDPAGGEAPLRPDAEIPARDTPHEVDCPPKVLARGPLG 1068

Query: 534  NFTLRNEQNSYSSLQELISELEQYP-----------PTIKRAHSANHNEVR-------IM 575
                  E   +  L    S                      +  +    VR       IM
Sbjct: 1069 VAAYLRETPPFDDLFWQSSAFRALSRAYDTHGGWAGLMNWISLQSELELVRRGSEKVQIM 1128

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            ++H AKGLE   VFL      +        +   P  +                      
Sbjct: 1129 SLHAAKGLEFRAVFLPALEDGIMPFAGAGTLTGKPQRDGA-------------------- 1168

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                 ++  +E  RLLYVGMTRAS+ L +   +  
Sbjct: 1169 -SPDTRTDMDEERRLLYVGMTRASEGLFLSCAARR 1202


>gi|295836626|ref|ZP_06823559.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
 gi|295826114|gb|EDY46535.2| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
          Length = 1174

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 69/540 (12%), Positives = 154/540 (28%), Gaps = 85/540 (15%)

Query: 440  MLKSPLFNFSEDDIFKICTQRHETETVYE---------------YIQKFANCGISKFQHV 484
            +L SPL      D+ ++       E                      +      + +   
Sbjct: 569  LLASPLCGMDAADLRRLGRALRAEERAAGNPVPLPSDVLLARALAEPERLIAHDAAYAKT 628

Query: 485  IKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDE-- 531
             + +  L+   +       +  +    +    +   +           G      LD   
Sbjct: 629  ARALGLLLARTRALLARGGTAEEALWELWNGTRWPARLERASRRGGAGGRNADRDLDAVC 688

Query: 532  --FLNFTLRNEQNSYSSLQELISELEQY--PPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
              F       E+         ++E E            +   + VR+MT H AKGL+  +
Sbjct: 689  ALFATAARAEERTGGRGALNFLAETEAQEIAADTLSGRTVRPDAVRLMTAHRAKGLQWRL 748

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V +      V+     +   +        G+   + +                 +   E 
Sbjct: 749  VVVAGVQEGVWPDLRQRGSLLEADRIGSDGLAEPLTRG----------------ALLAEE 792

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFHNDERVKKIKLTNSINK 706
             RL YV  TRA+D+L++      + +     R   ++ V          + + +   + +
Sbjct: 793  RRLFYVAATRAADRLVVTAVKAPAEDGDQPSRFLTELGVEPQHLTVRPRRPLAVPALVAE 852

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK----------------ND 750
                  +            R       + + +    + S                    D
Sbjct: 853  LRATTVDPRASPALREAAARRLARLAALTDGEGRPLVPSAHPGTWWGLADETVNEVPVRD 912

Query: 751  INEPYILNPSTIDTKGK---------TNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHK 800
             ++P  L+ S +                + +    +     G ++H L  +V        
Sbjct: 913  PDQPLALSASALGQLVDVCALQWFLGREVRAEAPASTAQGFGNVVHVLADEVATGRSPAD 972

Query: 801  RKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
                +            +A    A+E +N   ++ R L   ++  A      SE      
Sbjct: 973  LDVLMERLDTVWDGLAFDAPWKSAQERENARAALERFLRWHVLDRAGRTPVASEHPFDVT 1032

Query: 855  INCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            +   + +I I G +D++        ++ ++KT  + P   E     H  QL++Y++ + +
Sbjct: 1033 LPAGEHEIRIRGTMDRVDADAAGRAYVVDFKTGKNAPTAAEV---AHHPQLAVYQRAVAE 1089



 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 106/364 (29%), Gaps = 29/364 (7%)

Query: 38  SMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK 97
            + +G    L   + L+        E   S      +      +  + T+    +   + 
Sbjct: 139 RLLSGPEQDLAVRELLEG-------ETALSAEGRGRVRWPGQLRACLTTRGFADEVRAVL 191

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
                ++   + +          ++       A    A Y +      V+D+ +L+   +
Sbjct: 192 -----ARSRELGLGPDALHRFARRTGRPDWQAAAAFLAEYLDVLDLQGVIDYAELVHRAD 246

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            L ++ DV+      +    + + +DE QDT   Q  ++ +L              RTL 
Sbjct: 247 LLARRPDVARE----LAASYDAVYVDEYQDTDPAQVRLLDALAGQ----------GRTLL 292

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           A GD  QSIY+F GA+   +L      + R    G    +  LP + R+   +L     +
Sbjct: 293 AFGDPDQSIYAFRGADVNGILGFPDTFRTR---EGAPAPVRVLPAARRAARAVLDATRAL 349

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                  +  +           +R G    V       ++ D   +  + +         
Sbjct: 350 TLRIPLTRLPAAAVRAHREQLPTREGGDVAVHTCPSPGAETDHVADLLRRAHLEDGLPWG 409

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
             +       R+     ++             +    +  V              TR   
Sbjct: 410 DMAVLLRAGHRLPALRRSLTAAGVPIDTEGDELPLRLEPAVQPLLTALRATAEAETRAET 469

Query: 398 NDYK 401
             + 
Sbjct: 470 APHG 473


>gi|303326130|ref|ZP_07356573.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
            3_1_syn3]
 gi|302864046|gb|EFL86977.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp.
            3_1_syn3]
          Length = 1125

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 94/710 (13%), Positives = 184/710 (25%), Gaps = 139/710 (19%)

Query: 6    GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            G    ++  LI +    L           V+ +         +  + L  A        +
Sbjct: 537  GPGAGKTRVLIGRLQRLLEEGARPQDLLAVTFTRRAAG----ELRERLSAALPHLSRLPQ 592

Query: 66   FSLLSSFFLTQKFTPQKNIITQEINKKSPDLK----EKLKKSQDEFIKIRDRFNTYKMFK 121
               L           +K      +  +    +        +       + D  N  +  +
Sbjct: 593  CDTLHGL---AWGELRKAEPHCLLLAEDAAFRLFSAANADQPARRLRTLWDALNLARESR 649

Query: 122  STLASLTLAKYLNAHYEEAKKKN---CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
               A  +      A Y + K        +D+ DL+          + +  +  + D    
Sbjct: 650  KEPAQGSDLDEAAARYRQRKNAQSGVRYVDYADLLDWLL------EQAPNLAQRPDGPWR 703

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            H+L+DEVQD S +Q  VIR+L              R  F +GD  Q+IY F GA  +   
Sbjct: 704  HVLVDEVQDLSPVQLTVIRALL---------PPDGRGFFGIGDPDQAIYGFRGATGQSED 754

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +               +  L  S+R++ D+L +   +         L        + +
Sbjct: 755  SLRACWPT--------LMVYRLGQSYRASQDVLDMAQNLLQGRGRCGNLHAAKPLRAQLQ 806

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                                            +  +       A  + R I  T   ++ 
Sbjct: 807  LF-----------------------------AAPDERAEARWLAGRVQRLIGATAHTLLD 837

Query: 359  TDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                 ++       +   D+ VLVR +   P      R       I      +       
Sbjct: 838  QAQNRADAGELDNSLSPGDVAVLVRLKAQIPP----LRAALEQMGIPCAAPAQEEFWQEP 893

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
                 +AL        D L     L +P          +    + +  T +   Q +   
Sbjct: 894  VCARFLALAAGHCGFADILPTPPDLPAPAAPAEPLPWPEGNLPKPQEMTTWLGAQAWTGE 953

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
               + +              +         +  A+  R +                    
Sbjct: 954  LFCQSRQWRSLCRLWQECGGWQPLFQRMAWLHEAELVRAK-------------------- 993

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                                              +V+I+T+H +KGLE   VFL    S 
Sbjct: 994  --------------------------------AEQVQILTLHASKGLEFQAVFLPGLESG 1021

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +   +                       + +  +     ++   ++   E  RLLYVG+T
Sbjct: 1022 LLPLRRELLFENAAE------------NTMNDADAAVPGVEADPEARLAEERRLLYVGLT 1069

Query: 657  RASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            RA+  L +   +       + +     +   + D           + +  
Sbjct: 1070 RAARALFVSYCARRTLYGRKLRLAPSPFLAQIRDFCRQSTLTPHKRKSEE 1119


>gi|86742424|ref|YP_482824.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86569286|gb|ABD13095.1| UvrD/REP helicase [Frankia sp. CcI3]
          Length = 1124

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/442 (14%), Positives = 115/442 (26%), Gaps = 82/442 (18%)

Query: 6   GLSLNESYEL------IYKDLWPLPYFQVSDINKYVSLSMETGNPTIL------------ 47
           GL   +          +     P      + ++       E G P               
Sbjct: 487 GLDPEQRLAASHLSGPLLVLAGPGTGKTRTLVHAIAHRVAEHGVPAGECLAVTFTRRAAG 546

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKS--- 103
           + A+ L             +      LT        +    ++      ++ +L  +   
Sbjct: 547 ELAERLAGLLGDAAGRVLATTFHGLGLTIIREQHAKLARGPQVQVADDAVRVELIAAALH 606

Query: 104 -------QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                  +            ++     +    L   L A Y+ A +   ++D +DLI   
Sbjct: 607 GEGDARTRRRVAAGVAELKRHRALGQAIRDHDLVGAL-ARYDAALRDRDMVDLDDLITLP 665

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             LL+       +     +   H+ +DE QDT  +Q+ ++  L                L
Sbjct: 666 LTLLRSSPD---LAEHYQRRWRHVWVDEYQDTDELQYRLLGLLC----------PPTANL 712

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             +GD  Q+IYSF GA+ +  LR ++               + L   +RST  I+     
Sbjct: 713 CVIGDPDQAIYSFRGADVRFFLRFEQDYP--------SARPVALTRGYRSTRTIVRTALD 764

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           V +        +  +              G V L        ++       +     D+ 
Sbjct: 765 VIAPTSLVPDRTLTAVRG-------AEGDGPVLLRRYRSEAEEA------IAVVDTIDAA 811

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
              +S   L   +                         DI VL R  +            
Sbjct: 812 LGGTSFHALDSGV--------------DGSVDAGFSFADIAVLYRTARQA----EPIMEA 853

Query: 397 KNDYKISVVGNDRFILTDHLAI 418
                          L D  A+
Sbjct: 854 LATRGFPFQRRSHLPLADAPAV 875



 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 47/172 (27%), Gaps = 12/172 (6%)

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + L   ++ +               + + ++T+H +KGLE  +V +V     +   +  
Sbjct: 958  GNDLAGFLTSVTLAAEVDGLDP--RADRISLLTLHASKGLEYGLVIIVGCEDGLLPMRFG 1015

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                         G+                      K  + E  RL +VG+TRA  +L+
Sbjct: 1016 PAGEAPGGGIPGGGVNGTA----------DGTADAGTKDAEAEERRLFFVGVTRARHRLV 1065

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            +   ++               + D           +   +            
Sbjct: 1066 LTSAASRRRAGSVVTTRPSPFLADIRPALLSSVPAEGVPAEGGRRRSRRPAP 1117


>gi|222444649|ref|ZP_03607164.1| hypothetical protein METSMIALI_00261 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434214|gb|EEE41379.1| hypothetical protein METSMIALI_00261 [Methanobrevibacter smithii
           DSM 2375]
          Length = 823

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 101/625 (16%), Positives = 197/625 (31%), Gaps = 77/625 (12%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K+   +E  ++   + E +   ++     +  F+         +   L       YE+  
Sbjct: 185 KSFTPKEKLEEPSKMAEIILNMKNRMYYDQVNFDEIYDKFEEGSGAKLTLNCIKDYEDEL 244

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           KK  ++DF  L     + LK   +  ++       I  ILIDE QDT+LIQ ++  ++ E
Sbjct: 245 KKRNIIDFPMLEFKFLNKLKNHKLDIFL-----DNIKIILIDEYQDTNLIQEDIYFTIAE 299

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                        ++  VGD+ QS+Y F GA        K+    R    G     I L 
Sbjct: 300 YGLKNNG------SITVVGDDDQSLYRFRGATVDLFTNFKKRAHDRL---GINVEEINLK 350

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ---------------VG 306
            ++RS+ +I+   +    + +  Q    D    I        +                 
Sbjct: 351 TNYRSSENIINHCNHFVELDKEYQKARVDEKPKIIAPDFDKDKMPVLGMFRNNPQMLARD 410

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              L   +++  ++    ++     Y+D+L   S+   + ++           + I    
Sbjct: 411 LTLLINNLINNGEASLKIRRILNKDYYDTLNGNSNLQSINKQKQNNAKKSKNLEKITLKL 470

Query: 367 KKRVIQAKDILVLVRKRKDTP------LITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    A DI +L    K+                 K    I V       L D   ++ 
Sbjct: 471 DEEYGSASDIAILSYSPKEMKGSNPTFNFYLRKNLKKLKKPIEVFNPKGRDLQDVKQVEI 530

Query: 421 LMALGRFILSQE-----DDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-----VYEYI 470
              L    +         D     +    +  +    I  I ++    E           
Sbjct: 531 FCGLILECIDPHGIIQKSDKQIQNLADRNMNRWRYRAIDHIKSKPEPNEPVSLSEFVISW 590

Query: 471 QKFANCGISKFQH----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           Q        K+            +I +I EL    +     +  T  +       ++   
Sbjct: 591 QNRHPKNRDKWPESASLMELAYKLITWIEELQDDVEGIVYLEAITRSIKQTGFFNKYSGN 650

Query: 521 F-----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                   E   VL+   N  +          ++L+  L               + + IM
Sbjct: 651 IVFTNSKTERESVLEAIWNIFIPIATGGVGIDEDLLETL-------------PDDRINIM 697

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H +KGLE P+V + D GS+   +    +    P L           +     + + + 
Sbjct: 698 SIHQSKGLEFPLVIV-DVGSRFKKNTVNTQNLRFPKLEPKNRSIEDSVRCF---SSLGES 753

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASD 660
            +  K  + ++  RL +V  +RA +
Sbjct: 754 ERSEKDRSFDDLTRLYFVAFSRAEN 778


>gi|218463215|ref|ZP_03503306.1| ATP-dependent DNA helicase protein [Rhizobium etli Kim 5]
          Length = 371

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 108/323 (33%), Gaps = 48/323 (14%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQCIEERFSLLS 70
            E I +D+       ++D   +       G   + + AQ   L         E+   L++
Sbjct: 77  VERICRDVLGSKAGVMTDALHWSGTFHGIGARLLREYAQQIGLDADFTIHDREDSADLMN 136

Query: 71  SFFLTQKFTPQKNIITQE---------INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                  F+  ++    +                L + L+ +         +        
Sbjct: 137 LIRHDLGFSKTESRFPAKGTCLAIYSRAVNSETALDQVLRDAFPWCAAWEKQLR------ 190

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                      L A Y EAK+   VLD++DL++    ++ +  ++  I        +H+L
Sbjct: 191 ----------ELFACYVEAKQAQNVLDYDDLLLYWAQMVGENVIAEDI----GSRFDHVL 236

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT+ +Q  ++ +L              R L  VGD+ QSIYSF  A  + +L   
Sbjct: 237 VDEYQDTNRLQASILMAL----------KPGGRGLTVVGDDAQSIYSFRAATVRNILDFP 286

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         +I+ L  ++RST  ILT  + V  +       +  +      R   
Sbjct: 287 AAFS-------PPANIVTLDRNYRSTQPILTAANAVIDLASERFTKNLWTERQSAERPRL 339

Query: 302 IGQVGTVQLWEQVVSQHDSQCNP 324
           +      +    V  +       
Sbjct: 340 VTVRDEAEQARYVADKVLDNREE 362


>gi|331694979|ref|YP_004331218.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
 gi|326949668|gb|AEA23365.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190]
          Length = 682

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 119/407 (29%), Gaps = 70/407 (17%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQ--ASQTQCIEERFSLLSSFFLTQKFTPQK 82
                ++   +      G       A  L+Q      Q + +R   L             
Sbjct: 63  ARAAGELRTRLRALGAAGVQARTFHAAALRQLRYFWPQVVGDRQWQLLEHKFRAVGQAAV 122

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFI-KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
                       DL  +++ ++   I          ++ + T         + A YEE K
Sbjct: 123 RARAGTDQDAVRDLATEIEWAKSSLITPAEYPAAVARLRRDTPGPAEQVAAVYAQYEELK 182

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            +  +LDF+DL+++T  +L+       +  +        ++DE QD + +Q  V+ +   
Sbjct: 183 NQAEMLDFDDLLLHTAAILEDH---VGVAEEFRDRYRCFVVDEYQDVTALQQRVLDAWLG 239

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +             L  VGD  Q+IY+F GA P+ +L   R   +          ++ L 
Sbjct: 240 E----------RDDLTVVGDANQTIYTFAGATPRHLLDFPRRFPEAV--------VVRLQ 281

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             +RST  ++   + + S                            ++L  Q+    D  
Sbjct: 282 RDYRSTPQVVAAANTLISAARGRV------------------AGSRLRLEGQLPPGPDPD 323

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                           +       A  +A  I  +I   T           A +I VL R
Sbjct: 324 F--------------TEHDDEPAEAAAVARRIRKLIADGTP----------AAEIAVLFR 359

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
               +               I               I+  +++ R  
Sbjct: 360 INAQSEAYEQALAE----AGIPFQVRGGERFFQRPEIRRAVSVLRMA 402



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/329 (12%), Positives = 75/329 (22%), Gaps = 39/329 (11%)

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
                   E    ++           + +  +  +      A           +L     
Sbjct: 365 EAYEQALAEAGIPFQVRGGERFFQRPEIRRAVSVLRMAGGRAADDDLVGTVRALLAPVGL 424

Query: 514 RQQF-ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             +           + L   +              L   ++EL+                
Sbjct: 425 TDEPPAGASARTQWESLLALVGLAEELVAVREGLDLPGFVAELDARADAAHPPTVQG--- 481

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + ++H AKGLE  VVFLV         +H                             
Sbjct: 482 VTLASLHAAKGLEWDVVFLVGLVDGTLPIQH----------------------------- 512

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                        EE  RLLYVG+TRA   L +    + S  K   +R    +      +
Sbjct: 513 -----AEGDDDAIEEERRLLYVGITRARRVLALSWALSRSPGKGRQRRRSRFLHGLIPDH 567

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
               +  +     +K             E   + R       +D + + +          
Sbjct: 568 HPASRIAESRTGGSKPRCRVCGSPLLGAEAMKMRRCGDCPSDVDMELLDRLRSWRASTAK 627

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTF 780
            +         D       E   +D    
Sbjct: 628 EQQVPAYVVFTDATLAAIAEHRPADVAAL 656


>gi|288869771|ref|ZP_05976228.2| UvrD/REP helicase family protein [Methanobrevibacter smithii DSM
           2374]
 gi|288860429|gb|EFC92727.1| UvrD/REP helicase family protein [Methanobrevibacter smithii DSM
           2374]
          Length = 823

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 101/625 (16%), Positives = 197/625 (31%), Gaps = 77/625 (12%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K+   +E  ++   + E +   ++     +  F+         +   L       YE+  
Sbjct: 185 KSFTPKEKLEEPSKMAEIILNMKNRMYYDQVNFDEIYDKFEEGSGAKLTLNCIKDYEDEL 244

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           KK  ++DF  L     + LK   +  ++       I  ILIDE QDT+LIQ ++  ++ E
Sbjct: 245 KKRNIIDFPMLEFKFLNKLKNHKLDIFL-----DNIKIILIDEYQDTNLIQEDIYFTIAE 299

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                        ++  VGD+ QS+Y F GA        K+    R    G     I L 
Sbjct: 300 YSLKNNG------SITVVGDDDQSLYRFRGATVDLFTNFKKRAHDRL---GINVEEINLK 350

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ---------------VG 306
            ++RS+ +I+   +    + +  Q    D    I        +                 
Sbjct: 351 TNYRSSENIINHCNHFVELDKEYQKARVDEKPKIIAPDFDKDKMPVLGMFRNNPQMLARD 410

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              L   +++  ++    ++     Y+D+L   S+   + ++           + I    
Sbjct: 411 LTLLINNLINNGEASLKIRRILNKDYYDTLNGNSNLQSINKQKQNNAKKSKNLEKITLKL 470

Query: 367 KKRVIQAKDILVLVRKRKDTP------LITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    A DI +L    K+                 K    I V       L D   ++ 
Sbjct: 471 DEEYGSASDIAILSYSPKEMKGSNPTFNFYLRKNLKKLKKPIEVFNPKGRDLQDVKQVEI 530

Query: 421 LMALGRFILSQE-----DDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-----VYEYI 470
              L    +         D     +    +  +    I  I ++    E           
Sbjct: 531 FCGLILECIDPHGIIQKSDKQIQNLADRNMNRWRYRAIDHIKSKPEPNEPVSLSEFVISW 590

Query: 471 QKFANCGISKFQH----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           Q        K+            +I +I EL    +     +  T  +       ++   
Sbjct: 591 QNRHPKNRDKWPESASLMELAYKLITWIEELQDDVEGIVYLEAITRSIKQTGFFNKYSGN 650

Query: 521 F-----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                   E   VL+   N  +          ++L+  L               + + IM
Sbjct: 651 IVFTNSKTERESVLEAIWNIFIPIATGGVGIDEDLLETL-------------PDDRINIM 697

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H +KGLE P+V + D GS+   +    +    P L           +     + + + 
Sbjct: 698 SIHQSKGLEFPLVIV-DVGSRFKKNTVNTQNLRFPKLEPKNRSIEDSVRCF---SSLGES 753

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASD 660
            +  K  + ++  RL +V  +RA +
Sbjct: 754 ERSEKDRSFDDLTRLYFVAFSRAEN 778


>gi|167918353|ref|ZP_02505444.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           BCC215]
          Length = 667

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 71/456 (15%), Positives = 137/456 (30%), Gaps = 42/456 (9%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
              +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239 AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
             +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299 TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
             + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355 LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412 DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452 RYTLAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317 QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                       WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504 TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564 SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
                  L S  F      ++++     E + +   
Sbjct: 620 LRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAA 655


>gi|325996193|gb|ADZ51598.1| ATP-dependent DNA helicase [Helicobacter pylori 2018]
          Length = 403

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 56/433 (12%), Positives = 125/433 (28%), Gaps = 98/433 (22%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQK- 82
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 52  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKL 111

Query: 83  --------NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
                   N +      K P   + L      +     + +      S            
Sbjct: 112 LESIVDTKNALNATDEDKKPYTSQHLYALYSLYTNALKQEDFSAWLSSKNPEHAPYAAFY 171

Query: 135 A----HYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                 +E  KKK+  +D+ DL++     +L++                 +L DE QDT+
Sbjct: 172 ENILEEFENTKKKHDYIDYNDLLLLFKKAMLERP-----------SPYKEVLCDEFQDTN 220

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +    
Sbjct: 221 PLQESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN--- 265

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  +  L  ++RS+ +IL + ++V    +     + +   + +             
Sbjct: 266 -----ARVFTLTKNYRSSKEILDLANQVIQHNQRIYPKNLEVVKSGKFN----------- 309

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                         P   ++                 + IA  I                
Sbjct: 310 -------------KPTLLNYNDNI----------AQCQDIAKRIVMRKD----------- 335

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               K++ V+ R       +    R     + +           +   +   + +   + 
Sbjct: 336 ---FKEVAVIFRNNASADQLEAALRS----HNVPSKRKGSASFFESKEVALALDICALLF 388

Query: 430 SQEDDLSFVCMLK 442
           + +D ++ + +LK
Sbjct: 389 NPKDIMAAIHILK 401


>gi|213029671|ref|ZP_03344118.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 238

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 100/267 (37%), Gaps = 36/267 (13%)

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           +IDE QDT   Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ 
Sbjct: 1   MIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPKQAIYAFRGADIFTYMKA 52

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           +       T          L  ++RS   ++  V+K+FS   +A    +   + ++    
Sbjct: 53  RSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMNDAFMFRDIPFSPVKFAPR 102

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                  V          +    P    W    +S       S +A+  A  I + +   
Sbjct: 103 NQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQSYMAQVCATQIRDWLRAG 152

Query: 361 TIFSN-----GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                        R ++A DI VLVR R++  LI      L      SV  ++R  + + 
Sbjct: 153 QTGDALLTNGDSSRPVRASDISVLVRSRREAALIRDALTLL---AIPSVYLSNRDSVFET 209

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLK 442
           L  ++++ + + ++     +  V + +
Sbjct: 210 LEAQEMLWVLQAVMGPNVRIRCVALWR 236


>gi|288922526|ref|ZP_06416708.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288346115|gb|EFC80462.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 754

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 99/708 (13%), Positives = 194/708 (27%), Gaps = 145/708 (20%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQ--QASQTQCIEERFSLLSSFFLTQKFTPQKN 83
              +++   + L    G       A  L+       +        L    +         
Sbjct: 62  RAAAELRGRLRLMGADGVQARTFHAAALRHLSYFWPKVAGVALPRLEKSRVPLLVRAANR 121

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-SLTLAKYLNAHYEEAKK 142
              +    +  DL  +++ ++   +   D  +         + +  +   L   YE+ K 
Sbjct: 122 ARLRPDRAELRDLAAEVEWAKSMMVAPADYVHAAAEHGREGSYAPDVVARLYEAYEDVKG 181

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  VLDF+DL++ T  ++++    +W+  ++     H ++DE QD + +Q  V+ +   D
Sbjct: 182 EAGVLDFDDLLLLTAAVIEEH---SWVAAELRSRYRHFVVDEYQDVNPLQQRVLDAWLGD 238

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        L  VGDE Q+IYSF GA  + +L   R             +++ L  
Sbjct: 239 RDS----------LCVVGDEHQTIYSFTGASARHLLDFPRRFPT--------ATVVRLVR 280

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            +RST  ++ + + +      A   +  + ++    SS             V  +     
Sbjct: 281 DYRSTPQVVALANGLLDGAPPAAASAGSAASSGLAGSSGSAAAPPGPRGRLVAMRPAGPA 340

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                          +  S    A  +A  I  ++ T           + A DI VL R 
Sbjct: 341 PTWL-----------EADSEPEEAAGVARRIRGLLATG----------VAASDIAVLYRI 379

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +               I  +        +   +   + + R  +             
Sbjct: 380 NAQSEAYETAL----ARADIPYLLRGGEKFFERPEVTAAVRMLRAAV------------- 422

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
               +   D    +     +      +    A  G    +   + +  L  +A       
Sbjct: 423 ---RSAEPDRPGGLGDAVADGLGALGWQPGAAPAGRGADRERWENLAALHRLAID----- 474

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
                                         L           + L+  +++L +      
Sbjct: 475 ------------------------------LEAAR-----PDADLEVFVADLAERAANQH 499

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                    V + ++H AKGLE   VFLV                               
Sbjct: 500 TPTVQG---VTLASLHAAKGLEWDAVFLVGLVEGTLP----------------------- 533

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRT 680
                       ++         E  RLLYVG+TRA   L +           +      
Sbjct: 534 ------------IVHAQTDEQIAEERRLLYVGITRARVHLALSWSLARAEGARRSRRPSR 581

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
           + D +  +       +    T +       A   S H   +      E
Sbjct: 582 FLDDLRRAAATAGGTRGSSRTAATRAPGDAAVSGSGHGAGHGSAAAGE 629


>gi|290979129|ref|XP_002672287.1| predicted protein [Naegleria gruberi]
 gi|284085862|gb|EFC39543.1| predicted protein [Naegleria gruberi]
          Length = 705

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 91/593 (15%), Positives = 172/593 (29%), Gaps = 134/593 (22%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF--KSTLASLTLAKYLNAHYEE 139
           K  I +E+ ++       L ++ ++++         ++   +   +    A  +      
Sbjct: 217 KESIIKEMKEQLEKKNVTLTETVEKYVDWAQDEYAREVSANEFATSDYKAALTIYEEI-- 274

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
                 +L    L+     +L      +  R    Q  + +LIDE QDTS +Q++ ++ +
Sbjct: 275 ---AKSMLTLSSLMREACYILTSNHQGS--RDFYQQHYSDVLIDEFQDTSTVQYKFMKMI 329

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             +                 GD  Q+IYSF GA+ K   +                +I++
Sbjct: 330 IGEKT----------RFSVFGDPHQAIYSFLGAQEKIFDKIMEDFP--------SATILK 371

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS   I+   ++ F        +  DS   I   +                    
Sbjct: 372 LRRNYRSMKSIVLASNR-FMKTSTENSIETDSQDAITLNNFSTRDG-------------- 416

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                                      + IA  I  +              +   DI +L
Sbjct: 417 -------------------------EFQYIANQIQILNNKG----------VSYNDIAIL 441

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           +R+  +T  +  + +  K     +   + R +L     I D +     I  ++   S   
Sbjct: 442 MRRSTNTSELESILKNKKIPISKNAKDDTRVMLNLMKLICDGVE----IKDEKFTKSMKW 497

Query: 440 MLKSPLF--NFSEDDIFKICTQRHETETVYEYIQKFANCGI----SKFQHVIKYIHELIH 493
           ++K  ++     E    K      + ET    +             KF      I+EL  
Sbjct: 498 IIKHFIYFKGIGEKSFEKYLQYLKDQETPSTKVPTKGKAPKKDKLEKFIRFFTVINELAA 557

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
                +       I          I    G       DE +        +   SL     
Sbjct: 558 GLANTTFLKLAETIQKKFNWDDPLIIDGLGLN-----DELVT------SDLIDSLISFN- 605

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                       +S++   + I TVH AKG E   VF+ +    V               
Sbjct: 606 -------DETYNNSSDGKGIHICTVHRAKGREWKHVFVPEVQDGVMPLIKKSDPI----- 653

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                  +K  +   + E +R+ YV +TRA + L + 
Sbjct: 654 ----------------------QLKKQQIVHEGEEDRIFYVAITRAKEWLYLT 684


>gi|167902086|ref|ZP_02489291.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           NCTC 13177]
          Length = 661

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 132/453 (29%), Gaps = 36/453 (7%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
              +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239 AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
             +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299 TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
             + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355 LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412 DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L ++ RST  I+   ++VF     A  L       + +   R G  G   L +    
Sbjct: 452 RYTLAVNQRSTPAIVDACNRVFGANPRAFVLDG-----LDYEPVRAGSRGRAPLVDATDP 506

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              +                 +++         A     M G            + A  I
Sbjct: 507 LAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAASGI 566

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D   
Sbjct: 567 AVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATVDAEQLERVLAAIDAPGDLRR 622

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
               L S  F      ++++     E + +   
Sbjct: 623 LRSALASDWFGLDAAALWRLEQGDAEQDGIDAA 655


>gi|23013594|ref|ZP_00053471.1| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 640

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 78/555 (14%), Positives = 153/555 (27%), Gaps = 151/555 (27%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A      Y++A       DF DLI+   +L++  +     R +I    +H+LIDE QD +
Sbjct: 180 AAEAYGRYQQALAGEGGFDFGDLIM---ELVRGMEEDEDYRARISGFFDHLLIDEYQDIN 236

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q  ++R L           +    L+AVGD+ Q +Y++  A+P  +L  +        
Sbjct: 237 PAQERMLRLL----------RAQGARLWAVGDDDQCLYAWRSADPAFILGFETAWPN--- 283

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 ++  L  ++RSTA I+     +           +     + H +SR+       
Sbjct: 284 -----PALYRLSRNYRSTATIVEAASALIGANRRRHAKDQ-----VPHSASRLAL----- 328

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                    ++         A  +   +  + G          R
Sbjct: 329 -------------------------TIAGLDDDEAEADYVLRVVQGLAG----------R 353

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +   ++ VL R       I            + +V            ++ +  L R + 
Sbjct: 354 GMPWHEMAVLYRAGHVGSRIQIRLAE----AGVPLVVRGSGEFWQLGPVRLVAGLARLLA 409

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +D  +                   +   +   + + +  +K        +  + + + 
Sbjct: 410 DPQDMDAR----------------AVLGHGKRVDKLLSQAPEKIDTDVP--WPALCRQVG 451

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L+                    G +    R        L                    
Sbjct: 452 RLVSATARPP-------------GEEGLQWRDLAFTAADLAAECEGAAAFTA-------- 490

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
               L +      R   +  + V + T+H AKGLE   V +    + +  H+        
Sbjct: 491 ----LMEEQRRSLRRAESGGDAVVLSTIHGAKGLEWSAVVVAGCEADLMPHESSPD---- 542

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                              EE  RL+YV  TRA   L++   + 
Sbjct: 543 ----------------------------------LEEERRLMYVAATRAKRWLVLSFAAE 568

Query: 670 TSNEKKSNQRTWYDM 684
                  +      +
Sbjct: 569 RRKAAAPSPYIAEML 583


>gi|295100355|emb|CBK97900.1| hypothetical protein FP2_02130 [Faecalibacterium prausnitzii L2-6]
          Length = 424

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 50/426 (11%), Positives = 119/426 (27%), Gaps = 67/426 (15%)

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H +KGL+ PVVF+ DT  Q  +    + + +         +     +   +    + 
Sbjct: 1   MTIHRSKGLQFPVVFVADTARQFNAADTRQPVLLHRVWGAGLRLRPEGGEGAYKTAAYTA 60

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN----------------- 677
           L        + E  RLLYV +TRA D+LI+                              
Sbjct: 61  LSTVHAAEMRSEQMRLLYVALTRAQDKLILTVPLGIGRTSNPFAKAAAFLAAGAGETLNA 120

Query: 678 -QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE-------------WSTHHPENTP 723
              ++ D +  +         ++      +  +                       E   
Sbjct: 121 QAGSFADWLRAALLVHPNGGPLRRLAGNLELPFADTRSTIALTVQADVLPPEEAPAEAEE 180

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG-----KTNLESLLSDNQ 778
             R E    L++  +       P     + P  ++ +++         +           
Sbjct: 181 PPRPEADPALVETLRQGFGWRYPAAALADIPAKVSVTSLVHAAEQTTLERPGFLSKDGLT 240

Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-----------S 827
               G  +H  L+          ++          +    ++    L             
Sbjct: 241 AAEMGTALHAFLEHADFGALAAVRDAEDDAVLAAVRAERERQAAAQLTPPAIAGKLDVYK 300

Query: 828 ITRLLENPMMTTAM-SCDSYSEVSVSGKI----------------NCPKKDIIISGRIDQ 870
           I R + +        + +   E++    +                      +++ G  D 
Sbjct: 301 ILRFVRSEAFRRICGAENVLRELAFITSLPAAEVMAAQGRALPDGPAADAGVLVQGIADI 360

Query: 871 ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSE 929
           + +   ++ + +YKT     +        + AQL  Y K ++  +  + +    +  +  
Sbjct: 361 VLVYPDHLELLDYKTDRR--KTPADFVRAYRAQLEFYAKAIEKRFAPRRVTYKGIYSLEL 418

Query: 930 PKVFII 935
            ++  +
Sbjct: 419 GELIEV 424


>gi|332176218|gb|AEE25471.1| UvrD/REP helicase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 690

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 93/715 (13%), Positives = 198/715 (27%), Gaps = 135/715 (18%)

Query: 9   LNESYELIYKDLWPLPYFQVSDINKYVS-----------LSMETGNPTILKKAQTLQQAS 57
             E  + + +    +    V+  N   +           +          K    + +  
Sbjct: 32  AGERIQAMERYGVDMKKMLVTTFNVSAAEELKERLINSGMVKLPTIRNYHKVGARMNRFF 91

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL----KEKLKKSQDEFIKIRDR 113
               +     L++  +  +K   +    +++ N ++P L       + +        +  
Sbjct: 92  INNGLLPNAELITQDWRIKKLAIEALKQSRKSNTQTPALNINDDSVIDEFVGFIGFAKSD 151

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYE--EAKKKNCVL-DFEDLIINTNDLLKKRDVSAWIR 170
            N   +    +      K     +   E  +    +  F DLI +   +LK    +  + 
Sbjct: 152 LNAPDIMLIRMGLGDEYKEFVEAFNVFERLRIANSIQTFHDLIYDPVVVLKNNPDAVNL- 210

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             I   ++ I+IDE QD + I + ++  +  +                +GD  Q+I S+ 
Sbjct: 211 --ITNRLDFIIIDEFQDINPIMFILLEFIAGETARFIG----------IGDANQTINSYR 258

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           G++P  ++          T        + L  ++R   +I    + +    +   G    
Sbjct: 259 GSDPSFIMSA-------FTEKRPDTQSMALQQTYRFDDNIAICANALIQHNKVKAGNLCV 311

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           S          IG                            Y+++    S        + 
Sbjct: 312 SALNTPKSKITIG----------------------------YYENNGGTSYRCPEQHSLI 343

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            TI +                  KDI +L+R      L+           +I     D  
Sbjct: 344 RTIRHHQSRGKPL----------KDIAILLRTF----LLAPWIEAALIREQIPYRLADSK 389

Query: 411 ILTDHLAIKDLMALGR-FILSQEDDLSFVC---MLKSPLFNFSEDDIFKI--CTQRHETE 464
                 A+K ++A    F  + +     V    +L  P      D I  +    QR +  
Sbjct: 390 SSIMLPAVKGVIAFANTFSKNPQYQSFSVELASLLNFPFLAIRNDQIRLLLPFIQRGKRI 449

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG---AKKGRQQFISRF 521
             Y   +          + V   ++ L + A                   K  +    R 
Sbjct: 450 DEYALKRALPGVKDFIIERVSGRLNAL-NTALALPYKQALESYFDGHVETKYHELLAKRP 508

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
             +    L             +  +  E    +               + V + ++H++K
Sbjct: 509 SEKERKNL----ALIKSFVHTAG-TFSEPEQFMNALSLNKNT-----GDAVILTSLHSSK 558

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           G   PVV +      +  ++H                                     + 
Sbjct: 559 GCAWPVVIIPGCVETILPYEHP-----------------------------------EQT 583

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
           +  E+  RL+YVG+TRA   L +  +S     K+    +    +  +   D+  +
Sbjct: 584 TPIEDERRLMYVGITRARKHLHLITNSQPEFTKELKASSGKPPLSITVSPDKPSR 638


>gi|329939646|ref|ZP_08288947.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
 gi|329301216|gb|EGG45111.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045]
          Length = 1158

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/499 (13%), Positives = 143/499 (28%), Gaps = 73/499 (14%)

Query: 469  YIQKFANCGISKFQHVIKYIHELIH-----IAQFCSPHDFFTLILGAKKGRQQFISR--- 520
               +        +    + +  L+      +A   +  +    +        +       
Sbjct: 586  AEPERLVAHDPSYARGAQRLGALLRRTRECLADGGTAEEALWELWNGTPWPARLERSSRR 645

Query: 521  ---FGNEVIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNE 571
                G      LD     F       E+         + E+E            +   + 
Sbjct: 646  GGAAGRNADRDLDAVCALFATAARAEERVGGRGALNFLEEIEAQDIAADTLTRRAVRADA 705

Query: 572  VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
            VR+MT H +KGLE  +V L      ++     +   +        G+             
Sbjct: 706  VRLMTAHRSKGLEWHLVVLAGVQEGLWPDLRRRGSLLEADRIGRDGL------------- 752

Query: 632  VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM------- 684
                    + +   E  RL YV  TRA ++L++      +++     R   ++       
Sbjct: 753  ---AEPLSQGALLAEERRLFYVAATRAKERLVVTAVKAPADDGDQPSRFLTELGVEPKDV 809

Query: 685  ---VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
                         V +++ T    +      E +           +E  + L+      +
Sbjct: 810  TGRPRRPLSVSALVAELRATTVDPEASPALREAAARRLARLAALADEDGQPLVPSAHPYR 869

Query: 742  KL-------FSPIKNDINEPYILNPSTIDTKGK-TNLESLLSDN--------QTFNRGLI 785
                           D ++P  L+ S +D   +   L+  L                G +
Sbjct: 870  WWGMFEPTESKVPLRDRDKPVALSGSALDQLARTCALQWFLGREVKADVPATAAQGFGNV 929

Query: 786  IHKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLE---NP 835
            +H L  +V         +  +            +A    A+E  +   ++ R L+   + 
Sbjct: 930  VHVLADEVASGRTPADLEVLMERLDSVWNALAFDAPWKSAQEKAHARAALERFLKWHVDS 989

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIE 894
                A      SE      +     ++ I G +D++    +   ++ ++KT    P   E
Sbjct: 990  GGQRAGRTPVASEQDFDVTLGAGDYEVRIRGSMDRVETDGEGRAYVVDFKTGKQAPSAAE 1049

Query: 895  HIPYTHIAQLSIYEKILKD 913
                    QL++Y+  +++
Sbjct: 1050 VAR---HPQLAVYQLAVRE 1065



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 118/387 (30%), Gaps = 42/387 (10%)

Query: 1   LKNRFGL------SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ 54
           L++R  L      +   +    +       +       +   L + +G    +     L 
Sbjct: 97  LRDRLALRIGAERAPRATTFHSFGYALVRAHQDSGLFVE--PLRLLSGPEQDVTVRGLLA 154

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                   +     L    +      +  + T+    +   +      ++   + +    
Sbjct: 155 G-------QPELERLGLAHVRWPEDLRACLTTRGFADEVRAVL-----ARSRELGLDPAA 202

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                 +        A    A Y +      V+D+ +L+     L ++ +V+A    ++ 
Sbjct: 203 LEAFARRIGRPDWLAASAFLAEYLDVLDLQGVVDYAELVHRAVLLARRPEVAA----RLA 258

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            + + + +DE QDT   Q  ++ +L              RTL A GD  QSIY+F GA+ 
Sbjct: 259 AQYDAVYVDEYQDTDPAQVRLLHALAG----------GGRTLVAFGDPDQSIYAFRGADV 308

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L       +     G+   +  L  S RS A +L     +       +  +E     
Sbjct: 309 GGILEFPDAFAR---ADGRPAPVRVLTASRRSGAALLAATRLLTRRMPLTRLPAEKVRAH 365

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---ARRIAY 351
               ++R G  G V++        +              D +P    A ++   AR +  
Sbjct: 366 RELTAAREG--GRVEVRTYPTPGTELDNIADILRRAHLEDGVPWGEMAVLVRAGARGVPG 423

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILV 378
               +             +    +  V
Sbjct: 424 VRRALTAAGVPLDVDGDDLPLRHEPAV 450


>gi|319949233|ref|ZP_08023317.1| ATP-dependent DNA helicase UvrD2 [Dietzia cinnamea P4]
 gi|319437100|gb|EFV92136.1| ATP-dependent DNA helicase UvrD2 [Dietzia cinnamea P4]
          Length = 695

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 95/749 (12%), Positives = 210/749 (28%), Gaps = 163/749 (21%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            EE + LL   F       ++      ++  +  +++ L +       +    +  +   
Sbjct: 103 GEEPWQLLDGQFRAVAQAVRR----AGLDPATETIRDVLTEIGWAKSSLLTPDSYAEQAV 158

Query: 122 STLASLTL----AKYLNAHYEEAKKKN--CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
           +    L +           YE+ K      +LDF+DL+ +  +L+   +    I  +   
Sbjct: 159 ALGRDLPVPAPEVARAFRAYEDLKVSGPVRMLDFDDLLSHMAELV---EEVPAIAEEFRD 215

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                ++DE QD +  Q  ++ +   +             L  VGD  Q+IYSF GAEP 
Sbjct: 216 RYRCFVVDEFQDVTPAQQRLLTAWLGN----------RDDLTVVGDVNQTIYSFAGAEPD 265

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +L                 ++++L   +RST  ++ + + V              +  +
Sbjct: 266 FLLGFADRYP--------GATVVKLESDYRSTPQVVDLANAVIGAGAGRF-----RSAGL 312

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             R  R      V                           L + +     A  +A  +++
Sbjct: 313 TLRGMRPPGPEPV---------------------------LAEYADEDSEADAVAAAVAD 345

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           ++   T             +I VL R    +  I            I           + 
Sbjct: 346 LVHGGT----------DPAEIAVLYRVNAQSERIEAALDE----AGIGYRLKGGEGFFER 391

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
             ++  M+    ++    + S            ++        +    + +       A 
Sbjct: 392 PVVRRAMSAIDRLVDGSGEASAGA-----HSGLTDPADVVAVIR----QALEPLGLTAAE 442

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
              ++ +     +  L+ +A+  +  +                                 
Sbjct: 443 PSGTQARETWNSLSALVGLAEEIATAE--------------------------------- 469

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                  S   L  +++ L +         + +   V + ++H AKGLE   VFL+    
Sbjct: 470 -------SRPGLLPVVAGLRERAAARH---APDERGVTLASIHAAKGLEWDAVFLIGVHE 519

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                 H                                          EE  RLLYVG+
Sbjct: 520 GSLPISHAINAGP---------------------------------DAIEEERRLLYVGI 546

Query: 656 TRASDQLIICKHSN-TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           TRA + L +    +  +  + + + + +             ++   ++   +      + 
Sbjct: 547 TRAREHLSLSWSRSRRAGGRATRRPSRFLDPVRPAQAPAAARRSTDSSDKGRCRGCGEKL 606

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
           +        L  E +++   D  +  ++        I +P     +              
Sbjct: 607 NGPMHRALGLCPECSVEVDTDLFERLREWRRETSERIGKPAYTVFTNETLAQIARDRPAD 666

Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
           +       G+  HKL +    + +  R  
Sbjct: 667 TRALGRIGGIGAHKLGEYGDDVLKLVRGT 695


>gi|290957555|ref|YP_003488737.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260647081|emb|CBG70180.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 1121

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/547 (12%), Positives = 158/547 (28%), Gaps = 85/547 (15%)

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETE---------------TVYEYIQKFANCG 477
            D  + + +L SPL      D+ ++     E E               T      +     
Sbjct: 501  DTETALTLLASPLAGMDTADLRRLGRALREEERAGGNPVPPPSDELLTRALAEPERLVAH 560

Query: 478  ISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRFGNE------VI 526
               +    + +  L+  A+       +  +    +       ++                
Sbjct: 561  DPVYARGAQRLGALLRKARERLAGGGTTEEALWELWDGTPWPRRLERAARRGGAAGRNAD 620

Query: 527  DVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTA 580
              LD     F       E+         ++E+E            +   + VR+MT H +
Sbjct: 621  RDLDAVCALFATAARAEERTGGLGALNFLAEIEAEDIAADTLTGRAVRPDAVRLMTAHRS 680

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGL+  +V +      ++     +   +        G+   +                  
Sbjct: 681  KGLQWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPG--------------- 725

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM----------VYDSFH 690
             +   E  RL YV  TRA ++L++      +++     R   ++                
Sbjct: 726  -ALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLAELGVEPRDVTGRPRRPLS 784

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                V +++ T    +      E +           +E  + L+      +        +
Sbjct: 785  VASLVAELRATTVDPRVSEPLREAAALRLARLAALSDEDGRPLVPSAHPYRWWGMFEPTE 844

Query: 751  I-------NEPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRGLIIHKLL-QVI 793
                    ++P +L+ S +D       L+  L                G ++H L  +V 
Sbjct: 845  SKVPLRNRDQPVVLSGSALDQLANTCALQWFLGREVKADAPATAAQGFGNVVHVLADEVA 904

Query: 794  FTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
                       +            +A     +E ++  +++ R L+  +M         S
Sbjct: 905  SGRTPADLDVLMERLDSVWNALAFDAPWKSEQEKQHARVALERFLKWHVMDRTGRTPVAS 964

Query: 848  EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            E      +     ++ I G +D++    +   ++ ++KT        E        QL++
Sbjct: 965  EHDFDVTLEAGDYEVRIRGSMDRVETDTEGRAYVVDFKTGKQAVSSGEVTR---HPQLAV 1021

Query: 907  YEKILKD 913
            Y+  +++
Sbjct: 1022 YQLAVRE 1028



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 93/786 (11%), Positives = 199/786 (25%), Gaps = 91/786 (11%)

Query: 1   LKNRFGLSLNESYE----LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
           L++R  L +  +        +   + L             L + +G    +     L   
Sbjct: 53  LRDRMALRMGAARAPQATTFHSFCYALIRAHQDSDLFVEPLRLLSGPEQDVAVRALLAG- 111

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                 +     L    +      +  + T+    +   +      ++   + +      
Sbjct: 112 ------QPDLERLGLAHVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLAPEDLR 160

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
               +        A    A Y +      VLD+ +L+     L  +      +  ++   
Sbjct: 161 AFATRIGRPDWIAASAFLAEYLDVLDLQGVLDYAELVHRAVLLAGRPG----VAERLAAR 216

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            + + +DE QDT   Q  ++R+L              RTL A GD  QSIY+F GA+   
Sbjct: 217 YDAVYVDEYQDTDPAQVRLLRALAG----------GGRTLVAFGDPDQSIYTFRGADVNG 266

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +L       +     G+   ++ L  S RS A++LT    +       +  +E       
Sbjct: 267 ILEFPSAFPR---VDGRPAPVVVLRHSRRSGAELLTATRLLTQRMPLTRLPAEKVRAHRE 323

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
            R  R G  G V+++       +                                 I+++
Sbjct: 324 LRPVRDG--GRVEVYTYPTPGTELDN------------------------------IADV 351

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +    +        +   ++ VLVR       I  + R L        +  D   L    
Sbjct: 352 LRRAHLED-----GVPWSEMAVLVRA--GARTIPSMRRALTAAGVPLEIDGDDLPLRHEP 404

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-----TETVYEYIQ 471
           A++ L+   R +   E + +              D   +      E     +    E   
Sbjct: 405 AVQPLLTALRAVARAELETADAAAPAEEPDGPVPDGPVEEPHGPSEEPHGPSGEPREPSG 464

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
             +              H+         P    T  L  +       S         L  
Sbjct: 465 DPSGEPHDPSADPSGQPHD-RGGDPSAEPGPPRTSWLDTETALTLLASPLAGMDTADLRR 523

Query: 532 FLNFTLRNEQNS-----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                   E+         S + L   L +    +           R+  +         
Sbjct: 524 LGRALREEERAGGNPVPPPSDELLTRALAEPERLVAHDPVYARGAQRLGALLRKARER-- 581

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
              L   G+   +   +      P   +            +  ++ +        +  EE
Sbjct: 582 ---LAGGGTTEEALWELWDGTPWPRRLERAARRGGAAGRNADRDLDAVCALFATAARAEE 638

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
               L      A  +         +             +  +  +     ++ +   + +
Sbjct: 639 RTGGLGALNFLAEIEAEDIAADTLTGRAVRPDAV---RLMTAHRSKGLQWRLVVVAGVQE 695

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             W          E   + R+   + L     + ++              L  + +    
Sbjct: 696 GLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLFYVAATRARERLVVTAVKAPA 755

Query: 767 KTNLES 772
               + 
Sbjct: 756 DDGDQP 761


>gi|148642173|ref|YP_001272686.1| DNA helicase [Methanobrevibacter smithii ATCC 35061]
 gi|148551190|gb|ABQ86318.1| DNA helicase [Methanobrevibacter smithii ATCC 35061]
          Length = 819

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 101/625 (16%), Positives = 198/625 (31%), Gaps = 77/625 (12%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K+   +E  ++   + E +   ++     +  F+         +   L       YE+  
Sbjct: 181 KSFTPKEKLEEPSKMAEIILNMKNRMYYDQVNFDEIYDKFEEGSGAKLTLNCIKDYEDEL 240

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           KK  ++DF  L     + LK   +  ++       I  ILIDE QDT+LIQ ++  ++ E
Sbjct: 241 KKRNIIDFPMLEFKFLNKLKNHKLDIFL-----DNIKIILIDEYQDTNLIQEDIYFTIAE 295

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                        ++  VGD+ QS+Y F GA        K+    R    G     I L 
Sbjct: 296 YGLKNNG------SITVVGDDDQSLYRFRGATVDLFTNFKKRAHDRL---GINVEEINLK 346

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ---------------VG 306
            ++RS+ +I+   +    + +  Q    D    I        +                 
Sbjct: 347 TNYRSSENIINHCNHFVELDKEYQKARVDEKPKIIAPDFDKDKMPVLGMFRNNPQMLARD 406

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              L   +++  ++    ++     Y+D+L   S+   + ++           + I    
Sbjct: 407 LTLLINNLINNGEASLKIRRILNKDYYDTLNGNSNLQSINKQKQNNAKKSKNLEKITLKL 466

Query: 367 KKRVIQAKDILVLVRKRKDTP------LITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            +    A DI +L    K+                 K    I V       L D   ++ 
Sbjct: 467 DEEYGSASDIAILSYSPKEMKGSNPTFNFYLRKNLKKLKKPIEVFNPKGRDLQDVKQVEI 526

Query: 421 LMALGRFILSQE-----DDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-----VYEYI 470
              L    +  +      D     +    +  +    I  I ++    E           
Sbjct: 527 FCGLILECIDPQGIIQKSDKQIQNLADRNMNRWRYRAIDHIKSKPEPNEPVSLSEFVISW 586

Query: 471 QKFANCGISKFQH----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           Q        K+            +I +I EL    +     +  T  +       ++   
Sbjct: 587 QNRHPKNRDKWPESASLMELAYKLITWIEELQDDVEGIVYLEAITRSIKQTGFFNKYSGN 646

Query: 521 F-----GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                   E   VL+   N  +          ++L+  L               + + IM
Sbjct: 647 IVFTNSKTERESVLEAIWNIFIPIATGGVGIDEDLLETL-------------PDDRINIM 693

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H +KGLE P+V + D GS+   +    +    P L           +     + + + 
Sbjct: 694 SIHQSKGLEFPLVIV-DVGSRFKKNTVNTQNLRFPKLEPKNRSIEDSVRCF---SSLGES 749

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASD 660
            +  K  + ++  RL +V  +RA +
Sbjct: 750 ERSEKDRSFDDLTRLYFVAFSRAEN 774


>gi|218288826|ref|ZP_03493077.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240915|gb|EED08092.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 613

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 137/418 (32%), Gaps = 60/418 (14%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           GL+  E  +   K +        S++ + ++L    G P    +   L            
Sbjct: 237 GLAELERMQAPEKVM-AGARAIYSNLEQALALLSTPGLPFDPDRIAPLI----------- 284

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               +S  L++ + P      ++   ++ D  + L+K  +      +      M      
Sbjct: 285 --HWTSARLSKDYEPF-----KKWRGEANDAVKVLRKVLERGRAALEEDVRA-MRPHIEV 336

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +A+   A  +  + +   L F DL     +LL     +  +R  +     ++ +DE 
Sbjct: 337 LTGVARETLARAQSRRLEENRLSFSDLEHLAYELLAN---AEGVRDALHARYRYVFVDEY 393

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDTS IQ  ++ ++                LF VGD KQSIY F  AEP   L   R   
Sbjct: 394 QDTSPIQDAIVDAVA-----------PAGGLFLVGDVKQSIYGFRMAEPGLFLARYRRYA 442

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIG 303
           ++          I+L  ++RS   I+  V+ +F    +A   G        ++  ++   
Sbjct: 443 EK-----DGGEAIDLSANYRSRPGIVHFVNYLFGQLFHADVAGFDYADGHEMKPEAAYPE 497

Query: 304 QVGT-------------VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           + G                      ++       + +      D         I A  +A
Sbjct: 498 EDGAPCPVRIKLFFSGGTDEGRDAEAEDSEDNRERADGKGEEEDEQVAREKLEIEAMWVA 557

Query: 351 YTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
             I+  +       +      R ++ +D+ +L+R   +          +     I  V
Sbjct: 558 DEIARAVERQERVYDRAAKAYRPLRYQDVAILLRAGGENLN---TVVQVLASRGIPAV 612


>gi|302325472|gb|ADL24673.1| UvrD/REP helicase domain protein/acyltransferase domain protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 744

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 95/252 (37%), Gaps = 55/252 (21%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           ++  + FEDLI    +LL+  + +   R     +   IL+DE QD +  Q+ ++++L  +
Sbjct: 181 ESGQVVFEDLIYQAINLLENHESA---RAYFQNQWTEILVDEYQDINPSQYRLVKALLGE 237

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                      ++LF VGD+ Q+IY F GA+   + R +           ++ S+I L  
Sbjct: 238 ----------RKSLFVVGDDDQAIYGFRGADIGNINRFRDDF--------KESSLIRLEW 279

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS A+IL   +++F                             + L + + + + +  
Sbjct: 280 NYRSVANILHFSNRIFENKP-------------------------IHLRKVLRAGNMNGS 314

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                   +    +          ++I  +I  +  +           +Q K+  +LVR 
Sbjct: 315 GGSPIFKENREPEIWVSEDPVEEMQKIITSIKLLRES---------YDLQWKNFAILVRY 365

Query: 383 RKDTPLITFLTR 394
            +         R
Sbjct: 366 NRQRLYYEEALR 377


>gi|297192217|ref|ZP_06909615.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720135|gb|EDY64043.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 757

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 117/367 (31%), Gaps = 78/367 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + A YE+ K+   V+DFED+++ T  +L+       I   + ++  H ++DE QD S +
Sbjct: 222 QVYAMYEQLKRDRSVIDFEDVLLLTVGILQD---RHDIADHVRRQYQHFVVDEYQDVSPL 278

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++     D             L  VGD  Q+IYSF GA P  +L  +          
Sbjct: 279 QQRLLDLWLGDRES----------LCVVGDASQTIYSFTGATPDHLLNFRTR-------- 320

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               ++++L   +RST  ++ + + +             +   +   S R        + 
Sbjct: 321 HPGATVVKLVRDYRSTPQVVHLANGLLGQARGR-----AAEHRLELISQREPGPEPSYV- 374

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                     + +     A   A  I  +I             +
Sbjct: 375 --------------------------EYADEPAEAEGTARRIRELIDAG----------V 398

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR----- 426
            A +I VL R    + +          D  +           +   +++     R     
Sbjct: 399 PAGEIAVLYRINAQSEVYEQAL----ADAGVPYQLRGAERFFERQEVREAGIALRGAARA 454

Query: 427 -----FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
                 +   ED  S V  + S    ++ +        R   E++   ++   +   ++ 
Sbjct: 455 GGNDALLDDVEDLPSQVRAVLSTK-GWTTEPPAGSGAVRDRWESLAALVRLAEDFVRARP 513

Query: 482 QHVIKYI 488
           Q  +  +
Sbjct: 514 QATLADL 520



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 59/196 (30%), Gaps = 39/196 (19%)

Query: 523 NEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            +  + L   +       +    ++L +L++EL++               V + ++H+AK
Sbjct: 492 RDRWESLAALVRLAEDFVRARPQATLADLVAELDERAAAQHAPTVQG---VTLASLHSAK 548

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VFLV     +                                     +      
Sbjct: 549 GLEWDAVFLVGLTEGMMP-----------------------------------ITYAKTD 573

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              EE  RLLYVG+TRA   L +    + +   ++++R    +      +     +    
Sbjct: 574 EQVEEERRLLYVGVTRARLHLSLSWALSRAPGGRASRRPTRFLNGIRPGSAAAGPRTAGG 633

Query: 702 NSINKDEWIAYEWSTH 717
               +      +    
Sbjct: 634 AGGVERGGGRRKRRGP 649


>gi|330470779|ref|YP_004408522.1| uvrd/rep helicase [Verrucosispora maris AB-18-032]
 gi|328813750|gb|AEB47922.1| uvrd/rep helicase [Verrucosispora maris AB-18-032]
          Length = 1064

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 94/293 (32%), Gaps = 52/293 (17%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            A Y    +K  ++D ++L+     LL++      +  +       I +DE QD   +Q+
Sbjct: 634 LARYTGLLRKQGMVDLDELLTLPVALLREN---RKLVQRYRDRWQWIFVDEYQDVDAVQY 690

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E++R L+           +   L A+GD  Q+IYSF GA+    LR  +           
Sbjct: 691 ELLRLLS----------PADGNLCAIGDPDQAIYSFRGADVGYFLRFSQDF--------T 732

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              ++ L  ++RS+A IL    +  +     +G   D                       
Sbjct: 733 DARLVRLNRNYRSSAPILAAAVQAIAPSSLVRGRRLDPARLDP----------------- 775

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                     P    + +   +   +     +   +       + +  I  +G+   +  
Sbjct: 776 --------EAPLVGRYAAASVADEADFVVRTVDELVGGLSHRSLDSGRI--DGRSTTLSF 825

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            DI VL R       I        +   I V       L D   +  +    R
Sbjct: 826 SDIAVLYRTDSQAAPIVDAL----SRANIPVQKRSHDRLRDRPGVLAIARELR 874



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 61/262 (23%), Gaps = 42/262 (16%)

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH-------DFFTLILGA 510
                  + +             + +     +     +                   +L  
Sbjct: 837  QAAPIVDALSRANIPVQKRSHDRLRDRPGVLAIARELRHASGVDGALPARVRLAGQVLAE 896

Query: 511  KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
            +          G    + +   ++      +     L+  +S+L         A      
Sbjct: 897  RFAIPTLDGSGGV-RPEDVRTAVDLLTPLARRCGDDLETFLSQLATGAEVD--ALDPRAE 953

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
             V ++T+H AKGLE PVVFLV     +   +                             
Sbjct: 954  AVTLLTLHAAKGLEFPVVFLVGAEDGLLPLRWPGSTP----------------------- 990

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                           E  RL +VG+TRA D+L +   +        +       +     
Sbjct: 991  ---------DDDAVAEERRLFFVGLTRAQDRLYVSHAARRVRHGSEHDCRPSPFLDVIDP 1041

Query: 691  NDERVKKIKLTNSINKDEWIAY 712
                           KD  +  
Sbjct: 1042 GLFERLGDSDAPRRPKDRQLRL 1063


>gi|312194714|ref|YP_004014775.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311226050|gb|ADP78905.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 1202

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 84/715 (11%), Positives = 178/715 (24%), Gaps = 112/715 (15%)

Query: 6    GLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
            GL  ++                P      + ++       E G P     A T  + +  
Sbjct: 530  GLDADQRAAAAVTAGPLVILAGPGTGKTRTLVHAIAHRVRERGVPAGECLAVTFTRRAAD 589

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQ---------------------------EINKK 92
            + +E    LL++             +T                            +   +
Sbjct: 590  ELVERLDQLLAAPRAGGGDGRPDQRVTATTFHGLGLLVIREQHIRLARGPHVQVADDAVR 649

Query: 93   SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA-----KYLNAHYEEAKKKNCVL 147
            +  L E L  +                 K   +            + A Y+ A ++  + 
Sbjct: 650  AELLAEALGDAAGTVAARAAAARRIGELKRRRSLGDQVRGDELAGVLARYDAALRERDL- 708

Query: 148  DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
               DL       L        +     +   H+ +DE QD    Q+ ++R+L        
Sbjct: 709  --VDLDDLLALPLALLTAEPELAEGYRRRFRHVWVDEYQDVDETQYRLLRALC------- 759

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                    L  +GD  Q+IYSF GA+    LR ++                 L  ++RST
Sbjct: 760  ---PPDGNLTVIGDPDQAIYSFRGADVGFFLRFEQDFPA--------ARSAALTRNYRST 808

Query: 268  ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
              I+    +  +      G    +       + R                    C  + E
Sbjct: 809  GTIVAAARRAIAPASFVPGRELVAVHPDGPDAPRSPAGQPAPAGPGGAPVLVRACASEAE 868

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
               +  D++      +      ++  + +     + + G    +   DI VL R  +   
Sbjct: 869  EALAVVDTIEAALGGTSFHALDSFAPAQL-EAGRLAAGGH---LSFADIAVLYRTARQA- 923

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
                                    L D   +    AL   + ++  D +   +  +    
Sbjct: 924  ---EPVMAALARRGFPFQRRSHGPLADAPGVA---ALLAELRAERRDGAARSVSAALRDA 977

Query: 448  FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             +                +     +       +                           
Sbjct: 978  AARAAERATARGTVLATVLGAGQPERPGPPHEQ--------------------------- 1010

Query: 508  LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                          G      +   +        ++   L   ++ +             
Sbjct: 1011 ----------TDPPGASSEAEIRLGVELLAPAAASAGDDLAGFLTAVSLATEADTLDP-- 1058

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              + + ++T+H AKGLE  +V +V     +      +   +                +  
Sbjct: 1059 RADRISLLTLHAAKGLEFGLVLIVGCEDGLLPMTWGRPSRLGDRAEPGQAATAGPDTAVD 1118

Query: 628  RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                 +       +    E  RL +VG+TRA  +LI+   +  +        + +
Sbjct: 1119 G---RAGAATDPARGPLAEERRLFFVGITRARGRLILSHVTVGAGGTVRRAPSPF 1170


>gi|296169028|ref|ZP_06850690.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896287|gb|EFG75946.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 638

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/585 (12%), Positives = 167/585 (28%), Gaps = 86/585 (14%)

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE-------DDIFKICTQRH 461
              L++  A + L+ +        D    + +L  P+              + +    R 
Sbjct: 8   GGPLSEEPAARALLTVLAATADGLDGERALALLTGPIGGVDPVSLRQLRRTLQRAHPDRA 67

Query: 462 ETETVYEYIQKFANCGIS------KFQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKKGR 514
             +         A             Q V   +            P             +
Sbjct: 68  PGDFADLLADTLAGAAPPVGPQFRPVQRVRAVLDAAARCHRAGQDPRYTLWAAWHRSGLQ 127

Query: 515 QQFISRF------GNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPP-TIKR 563
           ++++S        G +    LD      + T +   + S +SL+ L+  +       +++
Sbjct: 128 RRWLSAAERGGPAGAQATRDLDAVTALFDITDQYVSRTSGASLRGLVDHVAALHLPGVRQ 187

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
              +   +VR+++ H A G E  +V +      ++ +   +   +      D    +   
Sbjct: 188 EPVSTVEQVRVLSAHAALGHEWDLVVIAGLQEGLWPNTVPRGGVLGTQRLLDVLDGVTGD 247

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK----HSNTSNEKKSNQR 679
            S              +     E  RLL   M RA  +L++            E      
Sbjct: 248 ASV-------------RAPLLAEERRLLVAAMGRARRRLLVTAVDGDPGGADGEAALPST 294

Query: 680 TWYDMVYDSFHNDERVKKIKLTNS-----------------INKDEWIAYEWSTHHPENT 722
            +Y++   +  + +      ++                            + +    +  
Sbjct: 295 FYYEVAQWAGDDADAAASQPVSAPRVLSAAALVGRLRGVVCAPDGTVDDADRACAATQLA 354

Query: 723 PLEREETI-KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
            L R             +     +      ++   L PST+       L  L   +   N
Sbjct: 355 RLARAGVAGADPASWHGLVPVSTAEPLCGGDDAVTLTPSTLQMLNDCPLRWLAERHGGTN 414

Query: 782 -------RGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLL 832
                   G ++H LL                ++      A+   A E       I   L
Sbjct: 415 PRALRSTIGSLLHALLAEPGRTESELLAELDRAWRHLPFEAEWHSANELARHRAMIEAFL 474

Query: 833 ENPMMTTAMSCDSYSEVSVSGKIN------CPKKDIIISGRIDQISIS-QQNIFIFEYKT 885
           E      A +  + +EV V  +I+        + ++ + GR+D++       + I + KT
Sbjct: 475 E----WRAQTRGALTEVGVEVEIDGALAASGDRGEVRLRGRVDRLERDAAGRLVIVDIKT 530

Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN---KSLVCLLIYV 927
                 + +       AQL++Y+  + +   +   +     L+Y+
Sbjct: 531 GKTPVSKDDAQQ---HAQLAMYQLAVAEGLVDAGTEPGGARLVYL 572


>gi|261415103|ref|YP_003248786.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371559|gb|ACX74304.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 744

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 95/252 (37%), Gaps = 55/252 (21%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           ++  + FEDLI    +LL+  + +   R     +   IL+DE QD +  Q+ ++++L  +
Sbjct: 181 ESGQVVFEDLIYQAINLLENHESA---RAYFQNQWTEILVDEYQDINPSQYRLVKALLGE 237

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                      ++LF VGD+ Q+IY F GA+   + R +           ++ S+I L  
Sbjct: 238 ----------RKSLFVVGDDDQAIYGFRGADIGNINRFRDDF--------KESSLIRLEW 279

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS A+IL   +++F                             + L + + + + +  
Sbjct: 280 NYRSVANILHFSNRIFENKP-------------------------IHLRKVLRAGNMNGS 314

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                   +    +          ++I  +I  +  +           +Q K+  +LVR 
Sbjct: 315 GGSPIFKENREPEIWVSEDPVEEMQKIITSIKLLRES---------YDLQWKNFAILVRY 365

Query: 383 RKDTPLITFLTR 394
            +         R
Sbjct: 366 NRQRLYYEEALR 377


>gi|293189251|ref|ZP_06607974.1| putative DNA helicase II [Actinomyces odontolyticus F0309]
 gi|292821714|gb|EFF80650.1| putative DNA helicase II [Actinomyces odontolyticus F0309]
          Length = 674

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/388 (17%), Positives = 125/388 (32%), Gaps = 73/388 (18%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                      ++ +   A L       L   YE+AK +  V+DFED++I    +L++  
Sbjct: 152 IDAAHYASRVARLRRDVPAGLDAGDMARLLDVYEDAKNERGVIDFEDILIYLCGMLQE-- 209

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             A +   + ++    ++DE QD +L+Q  ++                   +  VGD  Q
Sbjct: 210 -RADVASIVRKQYRSFVVDEFQDVNLLQARLLDLWLG----------GRHDVCVVGDVAQ 258

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           +IYSF GA P  +    R              I+EL   +RST  I+++ + V +     
Sbjct: 259 TIYSFTGASPDYLTGFGR--------KHPGARIVELTRDYRSTPQIVSLANDVLARSSQR 310

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +G                            V     +    Q S+ +Y D   +      
Sbjct: 311 EG---------------------------TVRLSSQRDGGAQVSYRTYDDDRAE------ 337

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A  +A +I+N+I             +    I VL+R    +               I +
Sbjct: 338 -AEGVAASIANLIAGG----------MAPHSIAVLMRTNGQSQAFEEALGA----RGIPI 382

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQE-DDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
                        ++  ++  R   +   DD S   +++  L                E 
Sbjct: 383 AVAGGKPFFARDDVRTAISRLRAAAAAATDDGSVGEIVRDVLSGVGWAPEAPSGQAGSER 442

Query: 464 ETVYEYIQKFANCGISK-FQHVIKYIHE 490
            +    I  +A+   ++     +  + E
Sbjct: 443 WSNMNAIVGWADDSKAETLAAFVAELDE 470



 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 76/268 (28%), Gaps = 43/268 (16%)

Query: 478 ISKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKG-RQQFISRFGNEVIDVLDEFLNF 535
               +  I  +      A    S  +    +L       +    + G+E    ++  + +
Sbjct: 393 RDDVRTAISRLRAAAAAATDDGSVGEIVRDVLSGVGWAPEAPSGQAGSERWSNMNAIVGW 452

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               + +   +L   ++EL      +      +   V + T+H AKGLE   VFLV    
Sbjct: 453 A---DDSKAETLAAFVAEL---DERVAYQVEPDKAGVELATIHAAKGLEWDAVFLVGVAE 506

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +                                     +      + +EE  RLLYV +
Sbjct: 507 GLLP-----------------------------------ISYAKTAAAREEERRLLYVAV 531

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA D L +    +   + +  +     +              K   +  +    A+E  
Sbjct: 532 TRARDLLTLSWARSRGADGRGKRHRSRLLDGIWPEEVGVGAPKKRARASTRALNQAFEEE 591

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKL 743
           +         R +  +  +  Q      
Sbjct: 592 SSPQVIELFGRLKAWRLEVSRQAGVPPF 619


>gi|167910323|ref|ZP_02497414.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           112]
          Length = 673

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/451 (15%), Positives = 136/451 (30%), Gaps = 42/451 (9%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
              +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239 AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
             +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299 TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
             + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355 LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412 DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452 RYTLAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317 QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                       WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504 TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564 SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                  L S  F      ++++     E +
Sbjct: 620 LRRLRSALASDWFGLDAAALWRLEQGDAEQD 650


>gi|308234985|ref|ZP_07665722.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14018]
 gi|311115083|ref|YP_003986304.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14019]
 gi|310946577|gb|ADP39281.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14019]
          Length = 1390

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/496 (15%), Positives = 154/496 (31%), Gaps = 51/496 (10%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
           + A+ L+     + +E      S      K   +   ++ E    +    EK K++  ++
Sbjct: 205 EFAEHLKNVIGNKKVESPLPAKSPAIPKYKKVKKTAGMSAE--DVTKTSSEKFKQACKKY 262

Query: 108 IKIRDR--FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
            K  D           ++     +   L   ++  KK+  +  F D  I    L+     
Sbjct: 263 EKYWDDSCLQLCVNLYNSCVKRDILLDLVLQFDAEKKRVNMAQFSDFTIAAYYLVTHFPS 322

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT------------EDFFVGKNTHSSP 213
              I  +   + + +L+DE QDTS  Q  +I +L                  G    S  
Sbjct: 323 ---ICAQYRNQYSQVLLDEYQDTSTTQAMLINTLFHAENDAENDAENGGDNDGDFAASKR 379

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             + AVGD  Q+IYSF GA      + ++           K +   L ++ R++  IL V
Sbjct: 380 THVMAVGDPFQAIYSFRGASTGAFCKFEQDF------NINKQNKYSLTVTRRNSLFILKV 433

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + +                       R                       Q E+     
Sbjct: 434 ANAL-------------------TEPMRGENGDNSTQNASRRFSSIDDREVQVETLKPKE 474

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           D+     +A  +  + A  I  ++                  + +L R + + P      
Sbjct: 475 DASNGTIAALFMPSQ-AEEIDAVVRFAKKIVEKYGENPLEPQLAILFRSKANMPKYAEKL 533

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                   I         L +  A+KD+++L + +    D  S + +L +P F  S DD+
Sbjct: 534 ES----AGIRTSIVGYSSLIEKPAVKDVLSLLKVVQDHSDSNSLMRLLATPRFALSTDDL 589

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK- 512
             +    +   T Y Y    +   +       ++   + ++    +  +    ++     
Sbjct: 590 GALAAIANSANTEYLYNIYSSAGLLEADLPKSQWDSAVRNLRNKANSGEISGQVINIYGG 649

Query: 513 -GRQQFISRFGNEVID 527
                 I R  +   D
Sbjct: 650 VYLADLIMRDFSTKND 665



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 52/201 (25%), Gaps = 31/201 (15%)

Query: 760  STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
            S  +             +   N G   H   Q                +          +
Sbjct: 1170 SVYNNLLACIRPIPSIPSIDANLGTKFHAWAQQFVDSATPSESCECYEWKNIVKHGISLE 1229

Query: 820  EYKNLLLSITRLLENP------------MMTTAMSCDSYS-------EVSVSGKIN-CPK 859
            +       +                        +    ++       E+ +  +I+    
Sbjct: 1230 KTPENRQKVIDDFNQSCKDSDSQSCALNQWKQRLIESRWAKRVPLAAEMPILMQIDNTEF 1289

Query: 860  KDIIISGRIDQISISQ----QN---IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
             + II+G +D +               I ++KT    P+  E I    + QL  Y  +L 
Sbjct: 1290 ANRIINGTLDAVFAGGLDASDTTKLYTIVDWKTGKR-PKSAEDIRLK-LEQLDWYRMLLA 1347

Query: 913  DSYP--NKSLVCLLIYVSEPK 931
             +     + +   L YVSE +
Sbjct: 1348 RATNVDLRCIDATLYYVSEAR 1368


>gi|320096305|ref|ZP_08027873.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319976764|gb|EFW08537.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 436

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 106/322 (32%), Gaps = 72/322 (22%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
           D +     R         T A    A  L   YE+AK +  V+DFED+++    +L++  
Sbjct: 158 DRYEAHLRRTGRQAPADLTGAE---AARLLDAYEDAKSERGVVDFEDVLVYMCGILQE-- 212

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               I   +  +  + ++DE QD +L+Q  ++                   +  VGD  Q
Sbjct: 213 -RPDIARLVRGQYRNFVVDEFQDVNLLQSRLLDLWLG----------GRHDVCVVGDVAQ 261

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           +IYSF GA P+ +    R              ++EL   +RST  I+   ++V +     
Sbjct: 262 TIYSFTGASPEYLTGFAR--------KHPGARVLELTRDYRSTPAIVEAANRVLAGAAQR 313

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +G                            V     +      ++ +Y D   +      
Sbjct: 314 EG---------------------------TVRLVSQRQGGVPVAYRTYDDDAAE------ 340

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A  IA  I+ ++   T   +          I VL+R    + +             I V
Sbjct: 341 -AEGIAQRITELMAGGTPAHS----------IAVLLRTNGQSQVFEEALGA----RGIPV 385

Query: 405 VGNDRFILTDHLAIKDLMALGR 426
              +         ++  ++  R
Sbjct: 386 AMTNSTPFFRREDVRRALSALR 407


>gi|188591512|ref|YP_001796111.1| putative ATP-dependent DNA helicase [Cupriavidus taiwanensis]
 gi|170938907|emb|CAP63908.1| putative ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG
           19424]
          Length = 579

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/675 (10%), Positives = 185/675 (27%), Gaps = 145/675 (21%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G     +       L   P+  V         ++       ++  + +   + +      
Sbjct: 31  GAGKTATIAAKTAVLLADPHVTVG--------AVTFSKDAAVELRERILALAGSATKRRL 82

Query: 66  FSLLSSFFLTQKFTPQKNIITQEIN---KKSPDLKEKLKKSQD--EFIKIRDRFNTYKMF 120
            +        ++   +      ++     ++  L + L       +           K  
Sbjct: 83  LAGTFHSLAYKQLGRRDGGSAPDVATDGDRTGLLIQVLSDLGLDWKVEDAIAAVEAIKTN 142

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              + S +  + L   Y+++ ++N  +DF+D++    + ++   +  +          ++
Sbjct: 143 FGQVQSGSAEEVLYRGYQDSLERNGKIDFQDMLRLAVEGMQNGTIEPY-------PFRYL 195

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT  +Q++ I           +   +   +  VGD+ QSIY F  A      R 
Sbjct: 196 LVDEFQDTDPLQYQWI----------ASHAQAGSIVTVVGDDDQSIYGFRSA---LGFRG 242

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                ++          + L  ++R  A+IL   D++     +                 
Sbjct: 243 MESFIRQF-----DAQSVVLGNNYRCHAEILGAADRIIRNNRDRIPK------------- 284

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                                   +  ++      +  +  A   A  +A          
Sbjct: 285 ------------------------ELVAYKGPGGKVQFQRFADEYAEAVA---------- 310

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
               +    V   +   VL R  +    +  + R     + +         + +      
Sbjct: 311 -AMEHLTAAVRNGQSAAVLARTNRILDPVEAICRS----HGVKYFRASGKSILNRPEAAL 365

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           +  L   +  +        +L          ++  + ++        +  +         
Sbjct: 366 MCNLLELV-QRTKSTGVDALLS--FVGIDTQELRLLHSKGRANTEQRQRKELLELGLSEA 422

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                + + + +   +      F++L+L          +                  R  
Sbjct: 423 SADRYRELMKRLVEWRTLCDRQFYSLVLEGVYEWMMHQTDSDP------------ARRAT 470

Query: 541 QNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             ++  L  L     ++     +  +    + + + T+H++KGLE   V+++     V  
Sbjct: 471 TTTFDVLSRLNGPFSDRLEFLRRSNNEPAPDALILTTMHSSKGLEWDRVWIIRAEETVVP 530

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                   +KST+ E  RL YV +TRA 
Sbjct: 531 D---------------------------------------EKSTESEERRLFYVAVTRAR 551

Query: 660 DQLIICKHSNTSNEK 674
           + L +          
Sbjct: 552 EDLRLSMAKKNPTSP 566


>gi|158312846|ref|YP_001505354.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108251|gb|ABW10448.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 1156

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 96/705 (13%), Positives = 182/705 (25%), Gaps = 154/705 (21%)

Query: 1    LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            L+ R  + L         +  P         +   +   E    T    A  L       
Sbjct: 570  LRERLDVLLAPGPAGTRAESTPADGTPTDAASTSGAPVDEAPGDTGRPGAGALATTFHGL 629

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK---SQDEFIKIRDRFNTY 117
             +        +        P+  +    I  +  D          ++             
Sbjct: 630  GLLIIREQHVAL----ARAPRVQVADDAIRGELIDEAMHGTDGPEARRRAAAELAELKRQ 685

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            +    T     LA  + A Y+ A +   ++D +DL+     LL+       +  +  +  
Sbjct: 686  RALGRTYRDHALAG-VLARYDAALRDRNMVDLDDLLTLPLGLLRSNPD---LAAEYQRRW 741

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             H+ +DE QD   +Q+ ++R L                L A+GD  Q+IYSF GAE    
Sbjct: 742  RHVWVDEFQDIDEVQYGLLRELC----------PPAADLCAIGDPDQAIYSFRGAEVGFF 791

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
            LR ++               + L  ++RST  I+       +      G    + T +  
Sbjct: 792  LRFEQD--------RPGARRVSLTRNYRSTPTIVGAALDAIAPTTFVPGRELRAVTGL-- 841

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
                  + G V                           + Q +S +  A  +A  I   +
Sbjct: 842  -----DEDGPV--------------------------VVRQCASEAEEAIAVADLIEEAL 870

Query: 358  GT------DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            G       D+     ++  +   DI VL R  +    +                 +    
Sbjct: 871  GGTSFHSLDSGVDGSERGRLSFADIAVLYRTARQAEPVMDAL----VRRGFPFRQHAHTP 926

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
            L D  A+  ++AL R                                         +   
Sbjct: 927  LADVPAVAAVLALLR-----------------------------------------DRRD 945

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                   +  +     + +L   A     +       +            R  +E    +
Sbjct: 946  PAPRTVTALLRDAAARLTDLAVAAGTELGTAAALAPGVAQPGGVPA---GRLPSEAE--I 1000

Query: 530  DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                         +   L   ++ +               + + ++T+H +KGLE  +V 
Sbjct: 1001 RRAAELLAPAAAVAGDDLGAFLTSVTLATEVDGLDP--RADRISLLTLHASKGLEFGLVI 1058

Query: 590  LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +V     +   +                                          + E  R
Sbjct: 1059 IVGCEDGLLPLRWGGSSPS--------------------------------ADAEAEERR 1086

Query: 650  LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            LL+VGMTRA  QL++   +                +         
Sbjct: 1087 LLFVGMTRARRQLVLTHAARRRRGGDLADTGPSAFLSAIDGRHLD 1131


>gi|89899997|ref|YP_522468.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89344734|gb|ABD68937.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
          Length = 1112

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 97/705 (13%), Positives = 209/705 (29%), Gaps = 102/705 (14%)

Query: 94  PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL----AKYLNAHYEEAKKKNCVLDF 149
           PD+   +K+ ++E +         +   +              L   YE A ++  ++DF
Sbjct: 333 PDVVNSIKRLKEEMVSPEAYRLAIQGLPTAEPGRRECREDVASLYECYERALRERKMVDF 392

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            DL+      +++         ++  +  H+L+DE QD +    E+I  L ++       
Sbjct: 393 VDLVAKPAKAIEQD---RPQYSELADKFQHVLVDEYQDVTHAMVELISQLAKN------- 442

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
               ++L+ VGD +Q+I+ + GA    + +     + +      K     L  + RS+++
Sbjct: 443 ---AKSLWVVGDVRQAIHHWRGASVHSLTKFNERFEAQ--AGSGKIKTYPLAFNRRSSSE 497

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL +V            L   S       ++         L                   
Sbjct: 498 ILELV----KQAGKRHILETTSLKLENTTATSGPNGHPPTLVSCFPF------------- 540

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                          +   IA  I  +              +      VL R   +  ++
Sbjct: 541 -------------VSMPDAIAAGIHELHSEG----------VPFGKQAVLNRWNYELGMV 577

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               R       I V+      L     +K L+ L + ++ +    + V ++        
Sbjct: 578 AAGLR----RVGIPVLHIG--ELAQRPEVKTLLCLMQLMVERL-PRALVGLMGDARLAVD 630

Query: 450 EDDIFKICTQRHETETVY--EYIQKFANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTL 506
            +D  K+     E   +    ++         + + V+  I  L++   +  +P  F   
Sbjct: 631 FEDFQKLMELCEEDPLLQRGAWLDDLPEDLSPQSRSVLVTIARLLNGQWRRSNPWGFVCD 690

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFT-LRNEQNSYSSLQELISEL----------E 555
           +L   +      +    E   +      F       +       L   L          E
Sbjct: 691 LLLEHRFGYPPRADVSIEAHSLRIALWQFAYATRTGDGERKFPTLPRFLLRQQLRQRIGE 750

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            Y      A  A  + VR++++H +KGLE   V + +  +  +  K              
Sbjct: 751 TYSERELPAEVAAIDAVRLLSIHGSKGLEFDSVHVNNVNTDDYGPKGRYWESPSE----- 805

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                          ++    +        E N LLYV ++RA  +L + ++   + +  
Sbjct: 806 -------ASRLVPPEVLRSSQETWNFEATVERNNLLYVALSRARKRLFMYQNGEDTRKGA 858

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                              V+ +    ++      A        E  P +  ET  +   
Sbjct: 859 PQLS----------PPSAPVRALSFNGTVTAPAGQAPIPRPPLTEPLPFDEFETFVRCPL 908

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
           +     +L    +  ++       + +        +   S  + F
Sbjct: 909 QHWYRFELRLAGEQGVDIAIKARWAVMAALKALAQKPGSSPKEAF 953


>gi|162448185|ref|YP_001621317.1| DNA helicase II [Acholeplasma laidlawii PG-8A]
 gi|161986292|gb|ABX81941.1| DNA helicase, UvrD/REP type [Acholeplasma laidlawii PG-8A]
          Length = 382

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 31/167 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE       +LDF+DL+I     +                  HI IDE QDT+L+Q
Sbjct: 122 IYDTYEAYLNTRNLLDFDDLMIEAFPYMGNHP------------FKHIFIDEFQDTNLLQ 169

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+++ + ++             +FAVGD  QSIY+F GA  + + +  +    +     
Sbjct: 170 YELLKRMFKE----------GVHIFAVGDPDQSIYAFRGARVELIGKYIKDYAAKL---- 215

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                ++L +++RS   IL V +K+     N             H  
Sbjct: 216 -----LKLEMNYRSNPWILEVSNKLIKKNMNRYKKRLIGIKDKSHVP 257


>gi|215405208|ref|ZP_03417389.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 02_1987]
          Length = 498

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/445 (14%), Positives = 135/445 (30%), Gaps = 64/445 (14%)

Query: 527 DVLDEFLNFTLRN-EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLE 584
           + +    + T     + S +SL+ L+  +       ++   +A   +V +++ H A G E
Sbjct: 8   ETVTALFDITDHYVSRTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHE 67

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             +V +      ++ +   +   +      D    +    S              +    
Sbjct: 68  WDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASM-------------RAPLL 114

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKK----SNQRTWYDMVYDSFHNDERVKKIKL 700
            E  RLL   M RA  +L++    + +             ++++   +  + E V    +
Sbjct: 115 AEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPV 174

Query: 701 TNS--------------INKDEWIAYEWSTHHPENTPLEREETI----KQLMDEQKIPKK 742
           +                +      A + +      T L R            +   +   
Sbjct: 175 SAPRVLSAAAVVGRLRVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPV 234

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF-------NRGLIIHKLLQVIFT 795
             S    D ++   L PST+       L  L   +            G ++H L      
Sbjct: 235 STSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGR 294

Query: 796 LPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                       +      A+ + A E       I   ++      A S    ++V V  
Sbjct: 295 SESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQ----WRAQSRSELTKVGVEV 350

Query: 854 KINCPKKD-------IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
            I+   +D       I + GR D++       + I + KT      + +       AQL+
Sbjct: 351 DIDGALEDGSGQARKIRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQ---HAQLA 407

Query: 906 IYEKILKD---SYPNKSLVCLLIYV 927
           +Y+  + +      ++     L+YV
Sbjct: 408 MYQLAVAEGLVRAGDEPGGARLVYV 432


>gi|283850979|ref|ZP_06368264.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
 gi|283573625|gb|EFC21600.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B]
          Length = 1080

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 99/664 (14%), Positives = 177/664 (26%), Gaps = 150/664 (22%)

Query: 16   IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
            +   +       V+   +      +     I   A   +  +      +    L+    T
Sbjct: 511  LEAGVPADKILAVTFTRRAAGELRDRLARDIPALADGTRTGAAALPRADTLHALALAAWT 570

Query: 76   QKFTPQKNIITQEINKKSPDLK------EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
            +    +  ++++E  ++   L        +LK +       R+R    +    T      
Sbjct: 571  EAGGREPVLLSEEAARRLFALANPGLAGARLKAAWRALDLSRERLEPLEPAADTDG-SDG 629

Query: 130  AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                 A Y   K    +LDF DL+    + L   D             +HIL+DEVQD +
Sbjct: 630  PGRFAARYAAQKAAWNLLDFTDLLEFWLEKLTSGDSRPD--------WSHILVDEVQDLT 681

Query: 190  LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             +         +   V          LFA+GD  QSIY F GA      R   +      
Sbjct: 682  PL---------QLALVAALAGPDRAALFAIGDPDQSIYGFRGATGGVEARLAALWP---- 728

Query: 250  NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  ++  L  ++RS   +L +   +F      + L       +          G ++
Sbjct: 729  ----DLAVAPLAENYRSAQPVLDLAAGLF---PGRRPLVSRLGPILP-------AAGGME 774

Query: 310  LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD--TIFSNGK 367
            L+    +  +                          A  +A  I  ++G    T+  +  
Sbjct: 775  LFAAPTAGAE--------------------------AEWMAGRIQELLGGTSLTLTRDFS 808

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               +   D+ VLVR       +    R       I     +     +   ++ L+A    
Sbjct: 809  VATLSPGDVAVLVR----FSGLVPAIRKSLERRGIPCAAPEADAFFNEPRVRLLLA---- 860

Query: 428  ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
                    +    L  P                 +  T+          G      +++ 
Sbjct: 861  --------AAGRHLGLPA--------ALGEAGDADGPTLPALPDAILARGPRGLAALLQD 904

Query: 488  IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
                  +                 KG    ++    E      E +              
Sbjct: 905  SPPFDRLFWQGPQFRDLCRAYDTHKGWAGLLNHVAGETE---IELVGRLAE--------- 952

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
                                   +VRIMT+H AKGLE   VFL      +        + 
Sbjct: 953  -----------------------KVRIMTLHAAKGLEFAAVFLPALEDGILPFAGAAALT 989

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
              P                              +  ++E  RL YVG+TRA  +L +   
Sbjct: 990  GAPGGTAGDP---------------------AGRMDEDEERRLFYVGLTRAKTRLFLSHA 1028

Query: 668  SNTS 671
                
Sbjct: 1029 KRRD 1032


>gi|289747015|ref|ZP_06506393.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289687543|gb|EFD55031.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
          Length = 489

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/430 (14%), Positives = 131/430 (30%), Gaps = 63/430 (14%)

Query: 541 QNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           + S +SL+ L+  +       ++   +A   +V +++ H A G E  +V +      ++ 
Sbjct: 14  RTSGASLRGLVEHVTALQLPVVRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWP 73

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           +   +   +      D    +    S              +     E  RLL   M RA 
Sbjct: 74  NTVPRGGVLGTQRLLDELDGVTKDASM-------------RAPLLAEERRLLVTAMGRAR 120

Query: 660 DQLIICKHSNTSNEKK----SNQRTWYDMVYDSFHNDERVKKIKLTNS------------ 703
            +L++    + +             ++++   +  + E V    ++              
Sbjct: 121 RRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRL 180

Query: 704 --INKDEWIAYEWSTHHPENTPLEREETI----KQLMDEQKIPKKLFSPIKNDINEPYIL 757
             +      A + +      T L R            +   +     S    D ++   L
Sbjct: 181 RVVVCAPACAVDDADRDCAATQLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTL 240

Query: 758 NPSTIDTKGKTNLESLLSDNQTF-------NRGLIIHKLLQVIFTLPEHKRKNFITSY-- 808
            PST+       L  L   +            G ++H L                  +  
Sbjct: 241 TPSTLQALNDCPLRWLAERHGGTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGH 300

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD------- 861
               A+ + A E       I   ++      A S    ++V V   I+   +D       
Sbjct: 301 LPFGAQWYSANELARHRAMIQAFVQ----WRAQSRSELTKVGVEVDIDGALEDGSGQARK 356

Query: 862 IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD---SYPN 917
           I + GR D++       + I + KT      + +       AQL++Y+  + +      +
Sbjct: 357 IRLRGRADRLERDPAGRLVIVDIKTGKTPVSKDDAQQ---HAQLAMYQLAVAEGLVRAGD 413

Query: 918 KSLVCLLIYV 927
           +     L+YV
Sbjct: 414 EPGGARLVYV 423


>gi|154507581|ref|ZP_02043223.1| hypothetical protein ACTODO_00061 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797215|gb|EDN79635.1| hypothetical protein ACTODO_00061 [Actinomyces odontolyticus ATCC
           17982]
          Length = 674

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/388 (16%), Positives = 125/388 (32%), Gaps = 73/388 (18%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                      ++ +   A L       L   YE+AK +  V+DFED++I    +L++  
Sbjct: 152 IDAAHYASRVARLRRDVPAGLDAGDMARLLDVYEDAKNERGVIDFEDILIYLCGMLQE-- 209

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             A +   + ++    ++DE QD +L+Q  ++                   +  VGD  Q
Sbjct: 210 -RADVASIVRKQYRSFVVDEFQDVNLLQACLLDLWLG----------GRHDVCVVGDVAQ 258

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           +IYSF GA P  +    R              I+EL   +RST  I+++ + V +     
Sbjct: 259 TIYSFTGASPDYLTGFGR--------KHPGARIVELTRDYRSTPQIVSLANDVLARSSQR 310

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +G                            V     +    Q S+ +Y D   +      
Sbjct: 311 EG---------------------------TVRLSSQRYGGAQVSYRTYDDDRAE------ 337

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A  +A +I+++I             +    I VL+R    +               I +
Sbjct: 338 -AEGVAASIADLIAGG----------MAPHSIAVLMRTNGQSQAFEEALGA----RGIPI 382

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQE-DDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
                        ++  ++  R   +   DD S   +++  L                E 
Sbjct: 383 AVAGGKPFFARDDVRTAISRLRAAAAAATDDGSVGEIVRDVLSGVGWAPEAPSGQAGSER 442

Query: 464 ETVYEYIQKFANCGISK-FQHVIKYIHE 490
            +    I  +A+   ++     +  + E
Sbjct: 443 WSNMNAIVGWADDSKAETLAAFVAELDE 470



 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 77/268 (28%), Gaps = 43/268 (16%)

Query: 478 ISKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKG-RQQFISRFGNEVIDVLDEFLNF 535
               +  I  +      A    S  +    +L       +    + G+E    ++  + +
Sbjct: 393 RDDVRTAISRLRAAAAAATDDGSVGEIVRDVLSGVGWAPEAPSGQAGSERWSNMNAIVGW 452

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               + +   +L   ++EL      +      +   V + T+H AKGLE   VFLV    
Sbjct: 453 A---DDSKAETLAAFVAEL---DERVAYQVEPDKAGVELATIHAAKGLEWDAVFLVGVAE 506

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +                                     +      + +EE  RLLYV +
Sbjct: 507 GLLP-----------------------------------ISYAKTAAAREEERRLLYVAV 531

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA D L +    +   + +  ++    +      +       K   +  +    A+E  
Sbjct: 532 TRARDLLTLSWARSRGTDGRGKRKRSRLLDGIWPEDARVGAPKKKARASTRALNQAFEEE 591

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKL 743
                     R +  +  +  Q      
Sbjct: 592 ASPQAIELFGRLKAWRLEVSRQAGVPPF 619


>gi|297202229|ref|ZP_06919626.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148065|gb|EDY54288.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 1152

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/547 (12%), Positives = 159/547 (29%), Gaps = 85/547 (15%)

Query: 433  DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE---------------YIQKFANCG 477
            D  + + +L SPL      D+ ++     + E                      +     
Sbjct: 532  DTETALTLLASPLAGMDAADLRRLGRALRDEERAAGNALPPPSDVLLARALAEPERLAVH 591

Query: 478  ISKFQHVIKYIHELI-----HIAQFCSPHDFFTLILGAKKGRQQFISRFGNE------VI 526
               +    + +  L+      +A   S  +    +        +                
Sbjct: 592  DPAYARGAQRLGALLGKARERLANGGSAEEALWDLWEGTPWPGRLERAARRGGAAGRNAD 651

Query: 527  DVLDE----FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTA 580
              LD     F       E+         + E++            +   + VR+MT H +
Sbjct: 652  RDLDAVCALFATAARAEERTGGRGALNFLEEIDAEDIAADTLTRRAVRPDAVRLMTAHRS 711

Query: 581  KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            KGLE  +V +      ++     +   +        G+   +                  
Sbjct: 712  KGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPG--------------- 756

Query: 641  KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM----------VYDSFH 690
             +   E  RL YV  TRA ++L++      +++     R   ++                
Sbjct: 757  -ALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGVEPKDVTGRPRRPLS 815

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                V +++ T    +      E +           +E  + L+      +        +
Sbjct: 816  VAALVAELRATTVDPRVSDTLREAAARRLARLAALADEDGRPLVPSAHPYRWWGMFEPTE 875

Query: 751  I-------NEPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRGLIIHKLL-QVI 793
                    ++P +L+ S +D       L+  L                G ++H L  +V 
Sbjct: 876  SKVPLRNRDQPVVLSGSALDQLANTCALQWFLGREVKADAPATVAQGFGNVVHVLADEVA 935

Query: 794  FTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
                       +            +A    A+E +N  +++ R L+  +M         S
Sbjct: 936  SGHTPADLAVLMERLDSVWNALAFDAPWKSAQEKENARVALERFLKWHVMDRTGRTPVAS 995

Query: 848  EVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            E      +   + ++ I G++D++    +   ++ ++KT        E     H  QL++
Sbjct: 996  EHDFDVTLEAGEVEVRIRGQMDRVEADAEGRAYVVDFKTGKQPVSSAEV---EHHPQLAV 1052

Query: 907  YEKILKD 913
            Y+  +++
Sbjct: 1053 YQLAVRE 1059



 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/435 (14%), Positives = 129/435 (29%), Gaps = 76/435 (17%)

Query: 1   LKNRFGLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ 54
           L++R  L +  +                  +       +   L + +G    +   + L 
Sbjct: 73  LRDRMALRIGAARAPQATTFHSFCYALVRAHQDSELFVE--PLRLLSGPEQDVTVRELLA 130

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
                   +     L    +      +  + T+    +   +      ++   + +    
Sbjct: 131 G-------QPDLERLGLAHVRWPDDLRACLTTRGFADEVRAVL-----ARSRELGLGPGA 178

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                 +        A    A Y +      VLD+ +L+     L ++ +    +  ++ 
Sbjct: 179 LDAFARRIGRPDWRAAAAFLAEYLDVLDLQGVLDYAELVHRAVLLARRPE----VAERLA 234

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            + + + +DE QDT   Q  ++ +L              RTL A GD  QSIY+F GA+ 
Sbjct: 235 AQYDAVFVDEYQDTDPAQVRLLHALAG----------GGRTLVAFGDPDQSIYAFRGADV 284

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +L       +     G+   +  L  S RS A +L     V       +  +E     
Sbjct: 285 NGILDFPYAFPR---ADGRAAPVEVLRTSRRSGAGLLAATRLVTQRMPLTRLPAEKVRAH 341

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                 R G    V  +    ++ D+                                I+
Sbjct: 342 RELAPVREGGRVEVFTYPTPGTELDN--------------------------------IA 369

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           +++    +        +   ++ VLVR    +  I  + R L        +  D   L  
Sbjct: 370 DILRRAHLED-----GVAWGEMAVLVRA--GSRTIPTVRRALTAAGVPLDIDGDDLPLRH 422

Query: 415 HLAIKDLMALGRFIL 429
             A+  L+   R + 
Sbjct: 423 EPAVAPLLTALRAVA 437


>gi|72160934|ref|YP_288591.1| superfamily I DNA/RNA helicase [Thermobifida fusca YX]
 gi|71914666|gb|AAZ54568.1| superfamily I DNA and RNA helicases [Thermobifida fusca YX]
          Length = 712

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/470 (14%), Positives = 136/470 (28%), Gaps = 80/470 (17%)

Query: 33  KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92
           +        G P +   A+T   A+  Q        +     T   +  K +     +  
Sbjct: 82  EMRGRLRALGAPRVQ--ARTFHAAALRQLSYFWADAVGGPKPTLIDSKIKTVAAAAHSCG 139

Query: 93  SPDLKEKLKKSQDEFI--------KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
               + +L+    E                   K  ++          +   YEE + ++
Sbjct: 140 FQVDRTELRDLAAEIEWAKVTQTRPTDYETAVAKEGRTPPMPPRDVARVYEAYEELRSEH 199

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            +LDFE ++  T  ++        I  +I  +  + ++DE QD + +Q  ++ +   D  
Sbjct: 200 NLLDFESMLELTVAMI---HERPDIAERIRSQYRYFVVDEFQDVNPLQKLLLDAWLGD-- 254

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +  VGD  Q+IY+F GA P  +     +            +++ L   +
Sbjct: 255 --------RDDICVVGDPNQTIYTFAGATPSYLTGFPEVYPH--------ATVVRLVRDY 298

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST  ++ V + V      A   +      +   + R                       
Sbjct: 299 RSTPQVVRVANAVLRSGGAA---ALSPDYRMELVAQRPDGPEPT---------------- 339

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                        +       A  +A  I+ +I   T           A++I VL R   
Sbjct: 340 -----------YTEYDDDLAEATAVAEKITGLINAGTP----------AREIAVLFRTNS 378

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            +            D  +           D   I+  +   R     +D  S V  ++  
Sbjct: 379 QSATYEQAL----ADAGVPYTVRGAAQFFDRPEIRAALHTLRGASRADDGESLVTTVRHL 434

Query: 445 LFNFS-EDDIFKICTQRHETETVYE----YIQKFANCGISKFQHVIKYIH 489
           L      +   +    R + E++           A    ++    +  +H
Sbjct: 435 LQPLGLTEQPPEGRQAREKWESLAALAQLAETIAAQRPEARLADFVAELH 484



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/381 (12%), Positives = 90/381 (23%), Gaps = 48/381 (12%)

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +            +    Y            + +  +  +          S       +L
Sbjct: 376 TNSQSATYEQALADAGVPYTVRGAAQFFDRPEIRAALHTLRGASRADDGESLVTTVRHLL 435

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLR-NEQNSYSSLQELISELEQYPPTIKRAHS 566
                 +Q    R   E  + L            Q   + L + ++EL     T     +
Sbjct: 436 QPLGLTEQPPEGRQAREKWESLAALAQLAETIAAQRPEARLADFVAELHTRAATEH---A 492

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
              + V + ++H AKGLE   VFLV     +                             
Sbjct: 493 PGFDGVTLASLHAAKGLEWDAVFLVGLTEGLLP--------------------------- 525

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                   +I        EE  RL YVG+TRA + L +      S   +  +   + +  
Sbjct: 526 --------IIYAETPEQVEEERRLFYVGVTRAREHLHLSWALARSPGGRRTRTPSHFLDG 577

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                    ++ +  +                 E                 +   +    
Sbjct: 578 LRPAAAAPARQHRERHRKKDRMVRCRVCGATLLEAVERTLGRCQDCPASVNEELLERLRH 637

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
            + +      +    I T       +    +            L  I  + E K + +  
Sbjct: 638 WRREAAALQKVPAFVIFTDATLQAIAEQEPSTAAQ--------LARISGVGERKLRRYGE 689

Query: 807 SYCTKNAKLWPAKEYKNLLLS 827
           +  T  A   P +    L   
Sbjct: 690 AILTLCAGGTPEQAISGLREE 710


>gi|332184148|gb|AEE26402.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family, Francisella type
           [Francisella cf. novicida 3523]
          Length = 688

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 86/603 (14%), Positives = 176/603 (29%), Gaps = 129/603 (21%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYK---MFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           K + D+  +  +    +I +     +     + +       L   + + + +  +   V+
Sbjct: 128 KITKDIDNERVEIFKNYISLLKSDLSLDNSKIKELNSKEKKLLDKIFSQFNQECENQKVI 187

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            ++D+I       +K   S      +    +HI+IDE QD + IQ   +R L        
Sbjct: 188 TYDDMIYLPAKFFEKDKSSVTQASNL---YSHIIIDEYQDINQIQQFFLRCLVGQNTY-- 242

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRS 266
                   + AVGD  Q+IY + G+ P  +L   K+          +  +   L  +FR 
Sbjct: 243 --------VMAVGDVDQTIYQWRGSTPYYMLEGFKKDF--------KDVNQYTLSYTFRY 286

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I  + + +    +        +   +                               
Sbjct: 287 GDLISLMANNIIVNNKKRHNNLCITYPKLNK----------------------------- 317

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                       + S    + ++   +  +I             ++A DI +LVRK   T
Sbjct: 318 ----------ATDVSILDSSDKVVLKLKALIHNG----------VKASDIAILVRKYNST 357

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM------ 440
            +           + ++        +      K +      + ++    S   +      
Sbjct: 358 TVFELS----CLYHDLAYNVVADKNIFSENLFKAIYGYL-MLFNKGYGFSKHTLEQRVEF 412

Query: 441 ----LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF---QHVIKYIHELIH 493
               L  P     +D   K+  Q     +         +  + K    ++++       +
Sbjct: 413 IKSMLDYPSLYLKKDLKQKLAIQIASDISQAANFITALSETVDKAFKQKNILAISSSWRN 472

Query: 494 IAQFCSP---HDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQE 549
           I               IL +    +Q     G         + +   +   +   ++L E
Sbjct: 473 IFNNTRLRKAEKAIDFILESLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIE 532

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            I  L +      + + +N N+++IM++H AKGLE   V + D     F      K+   
Sbjct: 533 FIELLYELYIRSNQQNQSNPNQIQIMSMHRAKGLEWDYVVVHDATEGGFFGDKNTKVC-- 590

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                              EE  RL YV +TR    L I    +
Sbjct: 591 -------------------------------DDVIEEERRLFYVAITRVKKHLFIVSSDD 619

Query: 670 TSN 672
            + 
Sbjct: 620 ITR 622


>gi|329942325|ref|ZP_08291135.1| uvrD/REP helicase family protein [Chlamydophila psittaci Cal10]
 gi|328815235|gb|EGF85223.1| uvrD/REP helicase family protein [Chlamydophila psittaci Cal10]
          Length = 724

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 92/560 (16%), Positives = 169/560 (30%), Gaps = 78/560 (13%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
               L++A    ++ + Q       LLS             +++     ++   K +L +
Sbjct: 232 KENFLEQALKYTESFKKQPFSITEDLLSFVDHLYASETSVRLLSFSKIAETFHPKNRLAR 291

Query: 103 SQD-EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDL 159
            Q        +  + ++  +      ++   L    +   K +    L  ++ I+   +L
Sbjct: 292 YQPCHAFSYIEETSWFQDTEQFCNVDSIFNTLLHDLQLYLKNHYTWWLSPDESIVTLEEL 351

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L+    +  +   + +    ILIDE QDT   QW +   L          +    +LF +
Sbjct: 352 LRSSQ-AEEVIKSLRKRFQLILIDEFQDTDRKQWNIFAKLFA-------HNDFSGSLFLI 403

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD KQSIY +  A+    L+ K    K         S + L  ++RST  ++  ++ +F 
Sbjct: 404 GDPKQSIYEWRNADLVTYLKAKSTFPK--------TSQLHLINNYRSTPQLMQAINILFC 455

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                  +                            S++            SY + L Q 
Sbjct: 456 KCSPFLEIPGYE-------------PIEYHSLTPQSSEYFDNSQHAPIHLFSYDNVLDQ- 501

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A  I         + T         I    + +LV               L   
Sbjct: 502 ------AAWI---------SQTASHLQATHGISFGRMAILVSDSAQAFD-------LITH 539

Query: 400 YKISVVGNDRFILTDHLAIKDL-MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
             I V  +    +        L +A    IL  E+      +L S LF     DI +   
Sbjct: 540 CSIPVSFSKNKSIFHLTETYLLTIAWLEAILYPENYEKIQRVLLSSLFRHDLTDILE--- 596

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            + E  + Y +  +                        F + H     +L   +G     
Sbjct: 597 -KKEHYSSYFFSLRSYIFDHGLLATFY----------HFMTLHG--EALLKTPQG----- 638

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                + ++ L  +L       Q+    LQ               ++S +   ++I T+H
Sbjct: 639 -DLTFQEMERLCAYLGTLSSQPQHQLLYLQYFSETGRWEENLSFSSYSEDTEILKITTIH 697

Query: 579 TAKGLESPVVFLVDTGSQVF 598
            +KGLE  VVF         
Sbjct: 698 ASKGLEYDVVFCPGLDKSKK 717


>gi|167845096|ref|ZP_02470604.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           B7210]
          Length = 652

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/451 (15%), Positives = 136/451 (30%), Gaps = 42/451 (9%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
              +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239 AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
             +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299 TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
             + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355 LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412 DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452 RYTLAVNQRSTPAIVGACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317 QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                       WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504 TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564 SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                  L S  F      ++++     E +
Sbjct: 620 LRRLRSALASDWFGLDAAALWRLEQGDAEQD 650


>gi|225075587|ref|ZP_03718786.1| hypothetical protein NEIFLAOT_00601 [Neisseria flavescens
           NRL30031/H210]
 gi|224953009|gb|EEG34218.1| hypothetical protein NEIFLAOT_00601 [Neisseria flavescens
           NRL30031/H210]
          Length = 650

 Score =  135 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 85/659 (12%), Positives = 182/659 (27%), Gaps = 137/659 (20%)

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +++ DI VLVR   +  +I    +      +I  V   R  + D      L AL  F L+
Sbjct: 1   MESGDIAVLVRTNNEAAMIAGKLK----QRRIQSVLLSRQSVFDSAEADSLSALIGFWLN 56

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +L   LF ++  +I+++    H+     E   +                  
Sbjct: 57  PRQTDWLRFVLTGVLFGYTAKEIYELNHNEHQLLKWLESSAEAMEKWRK----------- 105

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                                    + +       +    + L      E +   +   L
Sbjct: 106 -------GGIFAAVQQFAAQHDIETRLLKGGNERSLTNYYQILELLAE-EDSQSRNPAAL 157

Query: 551 ISELEQY----------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              L +                    ++   V+I+T+H +KGL+ P+V+         + 
Sbjct: 158 HKWLNEQISRARSGHFPSDAQTIRLESDEKLVKIVTMHASKGLQYPLVYCPFAWDTKDNS 217

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K   K+    +   +                    + HL      E  RLLYV +TRA +
Sbjct: 218 KENWKILHTENHETELLATSQT---------SEAELSHLADEKTAEDLRLLYVALTRAEE 268

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           QL I   +N +    +      + + D+            T+ +   +     + T+ PE
Sbjct: 269 QLNIYAAANKNCTPNNPFAYLLEGLPDADRESVNQSYKSATDVVEMLKTNWQRFITNAPE 328

Query: 721 NTPLEREETIKQLMDEQ-------------------------------------KIPKKL 743
           NT     E   Q    Q                                         + 
Sbjct: 329 NTEFAFTEETPQETVYQYSRQQDQALSAHTIKRRDFDFIRHTSFTGLSRHTKSTDEQHEP 388

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
             P  +         PS       ++   +    +  N G+ +H++L+ +      + ++
Sbjct: 389 LQPAIDPAESADRAMPSENLPSPLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQS 448

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--------DSYSEVSVSG-- 853
            + +   +             L +++ +L+   +T  ++             E+  +   
Sbjct: 449 EMIAEVLQRHSFED-----KWLPTVSAMLDTCRLTPLINESLSQIPPTRRLPEMGFTLYM 503

Query: 854 ----------------------------KINCPKKDIIISGRIDQISIS-QQNIFIFEYK 884
                                        ++       ++G ID +      N+ + +YK
Sbjct: 504 DDFKLDDLRRWFASSEANLPPECVQAAQLLDFHDLQGYLNGFIDMVCQDSDGNVVLIDYK 563

Query: 885 THHHVPQEIEHIPY---------THIAQLSIYEKILKDSY-----PNKSLVCLLIYVSE 929
           ++H       +             +  Q  IY   +   Y     P   +    +++  
Sbjct: 564 SNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAITRYYALRGKPLSKIAIRYLFLRG 622


>gi|225351772|ref|ZP_03742795.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158116|gb|EEG71399.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 1377

 Score =  135 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 61/420 (14%), Positives = 133/420 (31%), Gaps = 45/420 (10%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK--NIITQEINKKSPDLKEKLKK 102
           +  +  Q ++   +    +   +L      T++    K    + ++ +       EK ++
Sbjct: 180 SFDEAVQRVRDWDEAFVEQIAKALDGETVPTEEPKSPKLPKRLKKDSDADYEKKLEKYRE 239

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
              +          +   +  L            Y   K+   + +F D  I    L+ +
Sbjct: 240 LGHDMCVFNSAQLAFVAKQRDLLLDL-----VLDYHAEKRACNMAEFSDFTIAAFQLVSR 294

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 I     +  +H+L+DE QDTS  Q  ++ +L       ++       + AVGD 
Sbjct: 295 FPS---IGAAYRKRYSHVLLDEYQDTSTTQAALLSALFHADDTHRSA------VSAVGDP 345

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY++ GA P      +                  L ++ R++  +L   + +     
Sbjct: 346 FQSIYAWRGASPGAFRMLQHDF-----GMDATSRPFALTVTRRNSRMVLEAANNL----- 395

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                    T  +R  + R+      ++    +   D                   ++  
Sbjct: 396 ---------TKPLRLPARRLSSSLMREVDVPALVNTDEAPEGTVGVLAFDTFGQEVDAVV 446

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 IA      + T +              + VL R +                  +
Sbjct: 447 RFAKHAIA------LHTPSSRDLDNGMKDNRPHVAVLFRSKGIMSQFAEALE----RAGL 496

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
           + +   R  L +  A++D+ AL R +    D  + + +L +P F+ S +D+  +     +
Sbjct: 497 TTLVVGRSALLERPAVQDVFALLRVVSDHTDSAALMRLLATPRFSISANDLQALADTAEQ 556



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 62/214 (28%), Gaps = 50/214 (23%)

Query: 779  TFNRGLIIHKLLQV---------------------------IFTLPEHKRKNFITSYCTK 811
                G   H   +                            +  L E +R N   S   +
Sbjct: 1168 AAQLGTQFHAWAERFIMADANDAGIGVGASGNGGTRVAESRLAMLAELRRNNAAQSQDNQ 1227

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
            +          +        L            +++E  +   +       I++G++D +
Sbjct: 1228 DDNGADNNGIFDWQQR----LATSTWAR--RKPAWAERQIVVNVPQL--GTIVNGKLDAV 1279

Query: 872  SISQ-------QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVC 922
                       +   I ++KT     ++ E      +AQL +Y  +L      P  ++  
Sbjct: 1280 FFGGLDGADRSKQYTIVDWKTGKKPRKKEE--IQKKLAQLDMYRILLSAMEGVPLTAIDA 1337

Query: 923  LLIYVSEP----KVFIIPQNKLNKAFAEISTKIP 952
             L Y+SEP    +          +  AE+S  IP
Sbjct: 1338 CLYYLSEPIEGDRQLNAADKTEEEILAELSYGIP 1371



 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 22/59 (37%)

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
           +   +    + +    I+   +    +  RL YV +TRA  + ++   +  +  +    
Sbjct: 874 VDDMEGIDPDGLYLTQIEEYGRRLHADERRLAYVALTRARHEALLTCSATNAESRDPRA 932


>gi|227832526|ref|YP_002834233.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183606|ref|ZP_06043027.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453542|gb|ACP32295.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 1004

 Score =  135 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 82/632 (12%), Positives = 169/632 (26%), Gaps = 106/632 (16%)

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKDLMALGRFI 428
            +  +DI V+VR   D        R       + V       +L +   +K ++   R +
Sbjct: 286 GVDWRDIAVIVRSTGDIGPA----RRTLLSAGVPVHINPTDVVLAEQRLVKAVLLALRAL 341

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            ++ + +    ++  P+       + ++       +     +         +       +
Sbjct: 342 ENELEPVELEDLITGPVGGADPVTLRRLIRGLRRWKPEQRGMNTLRELLDGELPDFNNLL 401

Query: 489 HELIH----------------IAQFCSPHDFFTLILGAKKGRQQFISRFGN------EVI 526
            E                   + +  +  +    +  A     +  +          +  
Sbjct: 402 TEREEAILARIRGVLSAGRTALQEGAAVEEVLWEVWQATGLDTRLQAAALRGGAAGSQAD 461

Query: 527 DVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTA 580
             LD      +      E+   +SL+  I  + +           +   N V I+T H A
Sbjct: 462 RDLDAMMALFDAAGDYAERRPAASLESFILYITEQELPTGVRDRRSALPNAVEILTAHGA 521

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            G E   V +       +                D       P +               
Sbjct: 522 VGREWDTVIVAGVQEGTWPSVGETGSLFGQEDLIDLLDRGITPGTPV----------SHV 571

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD----------------- 683
                E  RL +V  TR   +L+I    +   +       + D                 
Sbjct: 572 SGRLAEERRLFHVATTRHRHRLLIVAVDSPEGDVVEEPSRFIDEFLSARGVDVPGAQARR 631

Query: 684 -------------------------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                                     ++     DE +  + ++                 
Sbjct: 632 EAGKRLARQAWPRELGLEVPEPSPVTLHSGASADEDIDPLDVSVLSVPAFVAQLRRCATD 691

Query: 719 PENTPLEREETIKQLMDEQ------KIPKKLFSPIKNDINEPYI----LNPSTIDTKGKT 768
           PE    ER + ++QL            P + ++        P      ++PS +D     
Sbjct: 692 PEAGEAERSQAVRQLARLAEAGVPGAHPDQWWAARDVASELPLRGSDTVSPSRVDALLSC 751

Query: 769 NLESLL----SDNQT---FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
            L ++L     D+       RG + H  L+ +      +    +      +    PA   
Sbjct: 752 PLNAVLGQLVEDDSANINLLRGNLAHAFLEALGRGASTEPAKRLVLDAFDSLLEGPAWHR 811

Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFI 880
           +  L    RL++        S  S   V V   +      D+ I G ID+++ + ++  +
Sbjct: 812 EASLADFERLIDRTHSWVLSSSTSLEPVGVEVPVTVDIGPDVTIRGFIDRLAKAGEDYVV 871

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            + KT   VP            QL  Y+  L 
Sbjct: 872 VDLKTGTKVPSADSAQNN---TQLMTYQLALA 900


>gi|283782936|ref|YP_003373690.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
 gi|283441282|gb|ADB13748.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
          Length = 515

 Score =  135 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 93/271 (34%), Gaps = 63/271 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K  +  +DF D+++    +L+    +A    +I Q I  I +DE QD S +
Sbjct: 196 DIYEAYETEKNAHNCIDFNDILLLCCHILRNFPEAA---NRIKQSIGWITVDEYQDVSPL 252

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E++R                R +  VGD  Q+IYSF GA    +L   +       + 
Sbjct: 253 QHELLRLWMGQ----------NRDICVVGDPAQTIYSFAGANSYYLLSFPQEFAPLGAD- 301

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L   +RST  I+ + ++V +           S     +   +    G V++ 
Sbjct: 302 ------ISLNTDYRSTERIVGLANRVLAA----------SAHKKDYVKVKAATKGGVRVS 345

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           +QV +                             A  +   I+ ++ +            
Sbjct: 346 QQVFATD------------------------VEEALGVVEQIAKLVKSGV---------A 372

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              +  +L R      ++    +  K  Y++
Sbjct: 373 HLGECAILTRTNAQQQVVCKALKAAKLPYRV 403



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 35/111 (31%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            S+N + V + T+H  KGLE   V+++     +                           
Sbjct: 430 ASSNISTVTVSTIHAVKGLEFAHVYVIGCSEGLIPFGSTTD------------------- 470

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                            S  EE  RL+YV +TRA   L +   S   +   
Sbjct: 471 ----------------DSALEEERRLMYVAITRAEKTLHLSYASRKDSGTG 505


>gi|298253432|ref|ZP_06977224.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
 gi|297532827|gb|EFH71713.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1]
          Length = 515

 Score =  135 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 93/271 (34%), Gaps = 63/271 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K  +  +DF D+++    +L+    +A    +I Q I  I +DE QD S +
Sbjct: 196 DIYEAYETEKNAHNCIDFNDILLLCCHILRNFPEAA---NRIKQSIGWITVDEYQDVSPL 252

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E++R                R +  VGD  Q+IYSF GA    +L   +       + 
Sbjct: 253 QHELLRLWMGQ----------NRDICVVGDPAQTIYSFAGANSYYLLSFPQEFAPLGAD- 301

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L   +RST  I+ + ++V +           S     +   +    G V++ 
Sbjct: 302 ------ISLNTDYRSTERIVGLANRVLAA----------SAHKKDYVKVKAATKGGVRVS 345

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           +QV +                             A  +   I+ ++ +            
Sbjct: 346 QQVFATD------------------------VEEALGVVEQIAKLVKSGV---------A 372

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              +  +L R      ++    +  K  Y++
Sbjct: 373 HLGECAILTRTNAQQQVVCKALKAAKLPYRV 403



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 35/111 (31%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            S+N + V + T+H  KGLE   V+++     +                           
Sbjct: 430 ASSNISTVTVSTIHAVKGLEFAHVYVIGCSEGLIPFGSTTD------------------- 470

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                            S  EE  RL+YV +TRA   L +   S   +   
Sbjct: 471 ----------------DSALEEERRLMYVAITRAEKTLHLSYASRKDSGTG 505


>gi|311696305|gb|ADP99178.1| UvrD/REP helicase [marine bacterium HP15]
          Length = 773

 Score =  135 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 101/777 (12%), Positives = 212/777 (27%), Gaps = 127/777 (16%)

Query: 14  ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
           E   +++       + +I  Y ++ +      + +              E  F       
Sbjct: 93  ERKLQEVCARSGLALPEIRTYHAMGLRLYKRFVREGYLPGFSDKILTEQEISFQAWQ--- 149

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           LT++  P+   +  EI +   D  E      D                           L
Sbjct: 150 LTRRLAPED--LADEIRRNKKDFVETATGFIDLVKTTLSPAEIVFEELGYSDKHKYLIDL 207

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +E+ +K    + + D++      + +      ++  +  +++ IL+DE QDT+ IQ 
Sbjct: 208 FHSFEQWRKSQGRISYADMLYEPVMAIHQNP---PLQRLVGNKMDLILVDEYQDTNEIQH 264

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL-REKRINQKRATNAG 252
            ++R +  D             +  VGD  Q+IY F GA+P+ +L R     +       
Sbjct: 265 LLLRYVAGD----------RARVTVVGDPDQTIYEFRGAKPEFILKRFSDEFESPLEQ-- 312

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL--SEDSTTTIRHRSSRIGQVGTVQL 310
                  L  +FR    +  + + +       + +     ++T     +    +     +
Sbjct: 313 ------TLSYTFRYGHRVALLANHLICHNTGRKDVLCHSHASTPGTEITLHRSESDADTV 366

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            + +  Q +         +  +  S+P      +LAR+I Y I    G            
Sbjct: 367 LQILQGQSEPALAGTAILFRVWSQSVP--IELKLLARQIPYRIDAGKGALFSREV----- 419

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                                    L       VV      L D   ++    L RF   
Sbjct: 420 --------------------QAITALLM-----VVTGKLENLPDEDRLELARQLLRF-PH 453

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                  +  L   L  FS     ++         +       A     K + + + + +
Sbjct: 454 VGLKEPELEQLARFLAGFSSGWHERL---------LAMDFDALAPMAARKLRKLGEVLAQ 504

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQ-----QFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           L   +         ++        +             E ID +  F  +    +  +  
Sbjct: 505 L--HSYGGPVAGLISVYAEHTDLYEGIRSLALTHESAEERIDTIQGFRQYLKSLDVTAEG 562

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L+ L +  +Q               V + T+H  KGLE P V +     +   +     
Sbjct: 563 ALEHLKTLKQQAGEKQ-------QGGVLLSTIHRTKGLEWPTVIIPGLQEKYLPYSPRP- 614

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                          +   ++  E   RLLYV MTR   QL + 
Sbjct: 615 -------------------------------QDNARAFLESERRLLYVAMTRTRQQLHLI 643

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                     +   +    +         V++     +     W+               
Sbjct: 644 ----------TRPASKQPHLDGDLGPSRFVEECCFELAEEFGRWLDERSPAESSTTRLTA 693

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
               + Q   +++           + +   + +   +          +  D  +F  
Sbjct: 694 PLTPVSQRYADRESVTLEGQAATFENSTEPLWHQKRLGHAIFGPGSVVAEDENSFEV 750


>gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 829

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 123/371 (33%), Gaps = 70/371 (18%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYK-MFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
             K  DL++          +            +   A+L   + L   Y++A ++   +D
Sbjct: 123 RTKPQDLQKLFAALIACKTEATPAQLAPDYPAEQLFAALGEDQPLALAYQQALRERQAID 182

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F DL+  T  LL        ++ +  Q  + I +DEVQDT   ++E++ +L +       
Sbjct: 183 FADLVFYTRSLLYHYP---QVQQRWSQRFSFIQVDEVQDTHRAEYEIVYALAK------- 232

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRST 267
                  +  +GD  Q+IY + G+EP+ VL   ++  Q              L  ++RST
Sbjct: 233 ---GSGNVTLIGDLDQTIYEWRGSEPETVLEQFRQDFQ---------PQTYSLIWNYRST 280

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             +L                                     ++   +      Q      
Sbjct: 281 QLLLKAASDFARSFAQRH----------------------TRITPVLTRSIGQQIQ---- 314

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                   + Q ++    AR I   I  +      F+           + +L R +K   
Sbjct: 315 --------VRQAATEREEARWIGEQIQTLAAGQPDFA--------YNRLAILTRTQKRIE 358

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
            I  + + +     I  +  ++     H  IKD +A  R IL+  D  +   +L+    N
Sbjct: 359 TIAPVLQEM----GIPAITPEQLQFFMHPEIKDALAYLRLILNPYDGNALRRVLRQSKSN 414

Query: 448 FSEDDIFKICT 458
             E  I  +  
Sbjct: 415 IDEATIQTVIR 425



 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 69/256 (26%), Gaps = 40/256 (15%)

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +   +  +       ++     Q        +F+ +     +   ++    P      +L
Sbjct: 609 TRTTVALLEAILPLLDSGRTARQALVAAYADQFRPLAAQFAQWRDLSHQLRPAALMEKVL 668

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE---LEQYPPTIKRAH 565
                   +      +    L          +      L    +    LE          
Sbjct: 669 WESGLYDDYTREEKGDDRPALVHLYQLVDLFQYKDNLQLHPHTALRPILEFTTLAKSLDQ 728

Query: 566 SANHNEVR-IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            +    +  +MT+H +KGLE   VFL                                  
Sbjct: 729 LSREENLLPLMTIHQSKGLEFDTVFLAGCSEGELPS------------------------ 764

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS-NTSNEKKSNQRTWYD 683
                         LK+   EE  RL YV +TRA  +L I  +  ++   KK+  R  YD
Sbjct: 765 -----------FFSLKEGRLEEEKRLFYVALTRAQKRLFISGYKTDSRGAKKTLSRFVYD 813

Query: 684 MVYDSFHNDERVKKIK 699
           +     H  E  +  +
Sbjct: 814 LPPTYIHPIEPEQGEE 829


>gi|227494917|ref|ZP_03925233.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
 gi|226831369|gb|EEH63752.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436]
          Length = 1088

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 122/981 (12%), Positives = 275/981 (28%), Gaps = 145/981 (14%)

Query: 7    LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ--QASQTQCIEE 64
            +   ++   +        Y + ++   +  L   TG    ++ AQ L+       + I  
Sbjct: 95   VRPVKTPVALAYKYLQTWYVERAEPRLFPQLL--TGAREDIELAQLLETCAVEWPENIPA 152

Query: 65   RFSLLSSFFLTQ----KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                L +F +      +   +  +    +       +E++  S  + +++ +        
Sbjct: 153  DLRALPAFRMELRNLFERAREAGLDGAGLVALGESEREEIWVSAGKLLQLWETLPLSVGS 212

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              T A LT A+          ++                         +   ++     +
Sbjct: 213  AETPALLTTAQ---------LQETAA--------QVISAWSVEAEKQQVSAALEVP-RVV 254

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++D++QD ++    ++ +L +              + A  +   ++ ++ G EP    R 
Sbjct: 255  IVDDLQDCTVATLNLLVALAKQ----------GTVIVATANPDIAVATYRGGEPHLDGRF 304

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +   Q          S ++L  ++R    +  VVDK+      A G   D        + 
Sbjct: 305  REALQ---------VSTLQLGPTYRGNQVLSKVVDKLTGFLPVAGG--ADRRKFGSVNAD 353

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                 G  QL+     +                      +     +  + +    ++   
Sbjct: 354  ESASAGVAQLYASAYQEVTGIIRQLNYQHLHEKVEYQDMAVIVRRSHEVEHFRQALVRNG 413

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
               S    R I      +           T +   L +   ++V              ++
Sbjct: 414  IPTSV-NSRAITYLHKPI-----------TAMLLLLLSAENVAVKVLTDEFGQQLEVQQE 461

Query: 421  LMALGRFILSQ---EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            L+ L + + S     D L    +  + L     +    +     + + +     K ++  
Sbjct: 462  LLILEQLVRSPLVKIDPLKLRRV--TDLVGQLSERELNLWELFTKVQELDRATDKTSDEA 519

Query: 478  ISKFQHVIKY---------------IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS--- 519
                +  +K                +  L    Q  SP+     +  A      F+    
Sbjct: 520  ERAIRKTLKTTENQATVQVMLQCLSLIHLGRELQEASPNVGVWKLWQATGLEDSFVKLAL 579

Query: 520  ---RFGNEVIDVLDEFLNFTLRNE----QNSYSSLQELISEL--EQYPPTIKRAHSANHN 570
                      D LD  ++     +    ++   +  +  +EL  +  P       +    
Sbjct: 580  AGTSESVSADDRLDAVISLCRTADVWQQRHPEGTALDFANELVAQTIPSDNLATIAQRPA 639

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
             + ++TV  A G + PVVF+    S V+       + I   L     I + +   + +  
Sbjct: 640  GIEVLTVMQAAGRQWPVVFVAGVQSDVWP-----NLAIRNRLTKASQISLKVHHPELKGL 694

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ------------ 678
              + + K LK  ++ +  R     ++R+S++L I   S     +                
Sbjct: 695  PQTQIFKQLKLQSRVDELRTFVAAVSRSSEKLFISAVSGEDTAQSVFFDLAAEEFLSAES 754

Query: 679  -RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET-------- 729
                +D++       E                 A +      E  P              
Sbjct: 755  VSDNFDVLQQIVELRELPVAEMRPLVAKLRRLSAQDTQLLEAEINPELARVAEQILASLA 814

Query: 730  -----IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ------ 778
                 I   ++      +  S       +  +L+PS I++      +  LS +       
Sbjct: 815  LQGVRIADPLNWTGTRLEEISHAPVFPGDKPVLSPSAIESLLNCPAQWFLSRHGGSRKST 874

Query: 779  -TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM- 836
                 G +IH + +                        W   EY        R   +   
Sbjct: 875  GAAGLGTLIHTIAEKYPHGD-------AEQMLADLEIFWDDGEYNRETELGRRAYTDARE 927

Query: 837  ----MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
                +    +     EV V  +I+       I G ID++      + + + KT +    +
Sbjct: 928  KIVKLAQCFADFGNGEVEVEKRISVDVGIATIMGVIDRLEHIDGAVRVTDIKTGYVPSVK 987

Query: 893  IEHIPYTHIAQLSIYEKILKD 913
                      QL+ Y+  L  
Sbjct: 988  ETQK----HKQLAFYQYALMK 1004


>gi|297571781|ref|YP_003697555.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932128|gb|ADH92936.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595]
          Length = 1044

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 97/891 (10%), Positives = 259/891 (29%), Gaps = 139/891 (15%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
           N     +     + ++ + ++ +  + I          ++   S  +   L   YE+A  
Sbjct: 144 NPDVASLEAFRSEYRDLITRAAE--LGITSSQLAQYGEQADNPSWVIGAELMEKYEDALA 201

Query: 143 KNCVL--------DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
               +        D   ++      +++    A +   +    + + +D++ + +L    
Sbjct: 202 VQAAVGHQNPDRTDHSRIVTQAAAFIQQWGGHAEL--SLCPTWDWVFVDDLANCTLALRS 259

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++R L            +   +   GD    + S+ G     + + + + ++  T  G  
Sbjct: 260 LLRVL----------QDNGTCVVVCGDPDAGVQSYRGG----IHQLQALIEQPRTAGGLG 305

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                L   +R    +   + KV S    ++   + S                       
Sbjct: 306 ARRYVLAHRYRGGGQLAPYISKVTSGIHVSRAAQQRSADYTY------------------ 347

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                       E   S    +      + LA+R             +     +  +   
Sbjct: 348 ----------APECAFSGHTFVSAHEEIAYLAQR-------------MRHIHNESGVAYA 384

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVV-GNDRFILTDHLAIKDLMALGRFILSQED 433
           D+ V  R R          R    D+ I V        L    A+ DL+ + +      +
Sbjct: 385 DMAVFTRSRSG----HENLRHALMDHGIPVQPLPSVTPLRFQGAVSDLLLMIKTACGMGE 440

Query: 434 D----LSFVCMLKSPLFNFSEDDIFKICTQ----------RHETETVYEYIQK------- 472
           +     +   +L  P F ++   I  +  Q          + + + +   + +       
Sbjct: 441 EAEIAEAIRTLLVGPFFGYTAAHIAALNRQMHGWEIFYGGKRQGDRLLAAMFEEGPNNPA 500

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR------FGNEVI 526
                 +K + V + I     +                    +++           +   
Sbjct: 501 ADIPEFNKIRSVAERIR--RAVQSEQRAERVLWEAWDGLGKAEEWREEVLAGGVQADIAD 558

Query: 527 DVLDE---FLNFTLRNEQNSYSS--LQELISELEQYP--PTIKRAHSANHNEVRIMTVHT 579
             LD          R      ++  + +LI  LE+           SA    + +++   
Sbjct: 559 ANLDAVIQLFRVAQRLADRDPANALIGDLIRVLEEQDVPEDSIARTSAGAEGISVVSPTA 618

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
             G     VF+      ++ +  ++           P +   +  S+     V  + +  
Sbjct: 619 GIGRSWGYVFISQVNDGIWPNLRLRNPLTR-----VPELVSIVVGSELAGAPVQGIQQV- 672

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS------NQRTWYDMVYDSFHNDE 693
                ++  R+L   MTRA+D + I    +  N          +  +   + + S     
Sbjct: 673 -AEVLDDELRMLLFCMTRATDGVEITCVESDDNIPSRFVPWLFSDDSGALLTHHSHAAVT 731

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                 +              +    +      E  I  +  +  +    ++  +++  E
Sbjct: 732 LDSATFIGQLRQAQRQGHDRIAASARDYLQKMAEHDIAGMGQKLWVDDLEYTKRESEDVE 791

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFTLPEHKRKNFI 805
              ++PS ++      L  +L              + G ++H++ +          +  +
Sbjct: 792 TIRISPSAVENMLTCPLRGVLDSANGQSLGNASLAHVGTLVHQIAEETEEPDLDMMRARL 851

Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
                         + + L      ++    +   ++ +  +E          +  +++S
Sbjct: 852 DELWAVFDFGTDLAD-QQLYERAVGMVT--KLHQYLTENPATEQR-ELYARVERDGLVVS 907

Query: 866 GRIDQIS---ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           G+ID++    +    + + ++KT    P++ +      + QL IY+ +++ 
Sbjct: 908 GKIDRLEFSDMDPSAVRVVDFKTGKSSPRKEDADR---VPQLLIYQWLVEQ 955


>gi|323698557|ref|ZP_08110469.1| UvrD/REP helicase [Desulfovibrio sp. ND132]
 gi|323458489|gb|EGB14354.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132]
          Length = 1032

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 90/634 (14%), Positives = 157/634 (24%), Gaps = 157/634 (24%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
           L++        +    L+          +   L S                     +  L
Sbjct: 509 LALTFTRRAAQELRDRLRALRGENADMPQAGTLHSLCFDYWKHAYSETPIVVPEIAAKKL 568

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
             ++                    +            + +Y   K    ++D+ DL+   
Sbjct: 569 FAEVNPEFAGKNLDHYWTKYILAREQLTELPADLADAHINYGNQKNHWDLVDYTDLLEF- 627

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             +L++     +          H+L+DEVQD + +Q  V+R +      G         L
Sbjct: 628 --MLEQSGAPTF-----HMPYAHVLVDEVQDLTPLQLAVVRGIAGASGEG---------L 671

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           F +GD KQSIY F GA            Q            + L  ++RS   IL     
Sbjct: 672 FCIGDPKQSIYGFRGAV--------SDVQTHLNGLWPNMEQVTLTDNYRSGQVILDGAGN 723

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +F               + R  + R                                  L
Sbjct: 724 LF-------------PDSPRLIARRD---------------------------VDATMHL 743

Query: 337 PQESSASILARRIAYTISNMIG--TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +   A   A  I+  I  +IG  + +I  +     +   DI VLVR +   P+     +
Sbjct: 744 FEAPDAMREATWISDKIKGLIGATSHSIVDSEGAGDLAPGDIAVLVRFKALIPVYEKALK 803

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  + V   +         +    A+ +                      +   + 
Sbjct: 804 ----RAGVPVSTPELEGFWQEPRV---AAILKAAEH--------------FLGMTLSGVE 842

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                        E        G       +                         + G 
Sbjct: 843 D----------TIEIPDHILAKGPVGLAAFLSETPPFDQFFWESRQFKELKKEFDRRGGW 892

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           Q  ++    +      E +  T                                  +V+I
Sbjct: 893 QGLVNWVSLQTE---LELVRKTAE--------------------------------KVQI 917

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H +KGLE   VFL      +     +  +    +L    G   +             
Sbjct: 918 MTLHASKGLEFEAVFLPACEEGILPFAGMDLLTAKVTLTPGRGQRFF------------- 964

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                      E  RL++VGMTRA   L +    
Sbjct: 965 -----------EERRLMFVGMTRARRNLYLSHAG 987


>gi|269127944|ref|YP_003301314.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268312902|gb|ACY99276.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 702

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/406 (13%), Positives = 117/406 (28%), Gaps = 75/406 (18%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQA------SQTQCIEERFSLLSSFFLTQKFT 79
               ++   +      G       A  L+Q                     +        
Sbjct: 65  RAAGELRGRLRQLGAPGVQARTFHAAALRQLTYFWPKVIGGEPPRVVESKIALVAEAARA 124

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            + +    E+   + ++ E  K +Q             +  +   A +     + A YE+
Sbjct: 125 CRLSYGRTELRDIAAEI-EWAKVTQHRPEDYVAGVE--RTGRKPPADVIDVARVYAVYEQ 181

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            +++  +LDFE ++  T  +L +      +  ++  +  + ++DE QD + +Q  ++ + 
Sbjct: 182 LRRERNLLDFEGILELTAAMLTEYPE---VARQVHDQYRYFVVDEYQDVNPLQKLLLDAW 238

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                           L  VGD  Q+IYSF GA P+ +L   R              +I+
Sbjct: 239 LG----------GREELCVVGDPNQTIYSFTGATPQYLLDFTRE--------HPGARVIK 280

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L   +RS+  ++ + + V                 +   S R      V +         
Sbjct: 281 LVRDYRSSPQVVRLANGVIGAARGRTA----RRHRLELVSQRPDGPEPVFI--------- 327

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                             +       A  IA     +I             + A  I VL
Sbjct: 328 ------------------EYDDEIAEADDIARRARKLIDEG----------VPASQIAVL 359

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
            R    +               + VV +      +   +++ +   
Sbjct: 360 YRINAQSENFEAA----FAAAGVPVVLHGAERFFERQEVREAVMRL 401



 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 62/265 (23%), Gaps = 43/265 (16%)

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             + L   +         +      L   + +        H+     V + ++H AKGLE
Sbjct: 445 RWESLSALVRLAED--VAAADPDAALPQFVAELEERAALQHAPTMEGVTLASLHAAKGLE 502

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              VFL                                            ++        
Sbjct: 503 WDAVFLAGLTEGTLP-----------------------------------IVYAETAEQI 527

Query: 645 EEYNRLLYVGMTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
           EE  RLLYVG+TRA + L +           K  +   + + +             +   
Sbjct: 528 EEERRLLYVGITRAREHLTLSWALSRAPGGRKNRSPSRFLEGLRPQTFGPPAAPASRPRR 587

Query: 703 SINKD----EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
              K            +          ++       +  +  K+  + +  +   P  + 
Sbjct: 588 RAGKGPLPCRVCGRPLTAALERKLGRCQDCPSAVDEELLEALKRWRAALAEEQGIPPYVV 647

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRG 783
            + +  +                 G
Sbjct: 648 FTDVTLQAIAEQRPETPQQLARISG 672


>gi|224823760|ref|ZP_03696869.1| exodeoxyribonuclease V, beta subunit [Lutiella nitroferrum 2002]
 gi|224604215|gb|EEG10389.1| exodeoxyribonuclease V, beta subunit [Lutiella nitroferrum 2002]
          Length = 607

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 70/579 (12%), Positives = 147/579 (25%), Gaps = 87/579 (15%)

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
           +  +  V   +  +      +DL+AL R       +      L S LF      +     
Sbjct: 3   ERGVPSVALTQESVFASAEAQDLLALLRAWAEPASEGRLRSALASELFGLDAARLL---- 58

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            R + E  +E           +++    ++                  +L    G ++  
Sbjct: 59  ARVDDEPAWEAQLAANAEDHRRWRE-HGFMAAWRGFFGRER---LAERLLPLPDGERRLT 114

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ--YPPTIKRAHSANHNEVRIMT 576
           +      +  L E L       Q     L      +              ++   V+I+T
Sbjct: 115 N------LAHLAELLQRESEERQGMAPLLAWFEGRVADPPGGEEALLRLESDAALVKIVT 168

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +HT+KGL+ PVVF           K                           +    D+ 
Sbjct: 169 IHTSKGLQYPVVFCPFLWDGKLDAKDPAFWRFRRDG---------ASWLAPDSVAGDDVR 219

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +  T  E  RLLYV +TRA  +  +           +     +     +    E++ 
Sbjct: 220 LLARSETLAEKLRLLYVALTRAQYRQYLAWGWVQGMATAALSWLLHGRDSHTLPELEQLA 279

Query: 697 KIKLTNSIN-----KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND- 750
               T   +                  P    L   E  +  +  Q   +KL++P +   
Sbjct: 280 LNPATLEADLATLLAAHAGEIGRLDASPLTLRLAPPEHAEAALAAQPFTRKLYTPWRVAS 339

Query: 751 --------------INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
                            P     +    +         +  +    G  +H +L+ +   
Sbjct: 340 FTSLTAAAHAAPAQAEAPDHDRGALTLAEEDAARLDRFAFPRGARAGTCLHAMLERVDFA 399

Query: 797 PEHK--RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--MMTTAMSCDSYSEVSVS 852
            +    R   +         L       ++L     +  +    +    +     E+  +
Sbjct: 400 ADDDTLRAAAVEQLERAGFALHWQDAALDMLRRTLAVPLDDGVRLADVPAGRRLVELEFT 459

Query: 853 GKINCPKKDIII------------------------------SGRIDQISISQQNIFIFE 882
             +       ++                               G ID +  +    ++ +
Sbjct: 460 LPVERLDVAALVGVLTDPANGLAAPLRDAAAALDFYRVVGYLKGFIDLVCEANGRWYLVD 519

Query: 883 YKTHHHVPQE--------IEHIPYTHIAQLSIYEKILKD 913
           YK++H                    +  Q  +Y   L+ 
Sbjct: 520 YKSNHLGHDAAYHREALLASVAREHYYLQYLLYCVALRR 558


>gi|303234019|ref|ZP_07320668.1| UvrD/REP helicase [Finegoldia magna BVS033A4]
 gi|302494944|gb|EFL54701.1| UvrD/REP helicase [Finegoldia magna BVS033A4]
          Length = 613

 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 21/168 (12%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   YE  KKKN  +DF+D++  + ++L + +   +I  +I ++     +DE QDTS 
Sbjct: 161 EQIYQEYESFKKKNFFIDFDDMLTRSFEILNEDE---YILKRIKRKYKFFQVDEGQDTSK 217

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+E+I+ +                LF V D+ QSIYSF GA+P  +L   +I       
Sbjct: 218 IQFELIKKIA----------YPENNLFIVADDDQSIYSFRGADPSYLLDFNKIFSN---- 263

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                SI  +  +FR +  I+   +      +N       ST     +
Sbjct: 264 ----ASIYYIDQNFRCSDKIVNASNLFIKQNKNRYNKDVTSTKASNKK 307



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 102/313 (32%), Gaps = 43/313 (13%)

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L RK   +  +T        D+      +D     +H  + D++ +  F  ++     
Sbjct: 334 AILYRKNISSIALTKYLHDQDIDFHSRYQKDD---FYNHFVLNDILKMIAFSENKTSVGL 390

Query: 437 FVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           F  +   L S +   S + +          + + +     +   + +F  +  +   +  
Sbjct: 391 FRDIYYKLNSYIKKTSINQLETYDESMPVLDRLLD-DSTLSRYYVDRFMDLKSFFSGIKR 449

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                        I          + +     +D L E      +         ++ I+E
Sbjct: 450 AKGSKKIDIIMNDIDYKTYIEDSVLLQNQKISLDHLVE----IYKYLFKDCECYEDFINE 505

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +E     I++    + + + ++TVH+AKGLE   VF++D     F               
Sbjct: 506 IESL-KKIQKESIKHTSNLNLLTVHSAKGLEFDEVFIIDLIDGEFPTNIDSN-------- 556

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                  K   ++  EE  R+ YV MTRA D+L +      ++ 
Sbjct: 557 -----------------------KKNYENIFEEERRMFYVAMTRAKDKLTLLSPKTRNSV 593

Query: 674 KKSNQRTWYDMVY 686
           +  + +   D++ 
Sbjct: 594 EVDSSQFLKDIIE 606


>gi|9857300|dbj|BAB11938.1| orf3 [Streptomyces griseus]
          Length = 551

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 63/511 (12%), Positives = 141/511 (27%), Gaps = 70/511 (13%)

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLIL 508
            ++     E         +        + H  + +  L+  A+       +  +    + 
Sbjct: 1   IRVPAPSDELLARALAEPERLVTHDPAYAHGAQRLGALLRKARELLEGGGTAEEALWALW 60

Query: 509 GAKKGRQQFISR------FGNEVIDVLDE----FLNFTLRNEQNSYSSLQELISELEQYP 558
                  +           G      LD     F       E+         + E++   
Sbjct: 61  NGTPWPGRLERAALRGGAGGRNADRDLDAVCALFETAARAEERTGGRGALNFLEEVDAQD 120

Query: 559 --PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                    +A  + VR+MT H +KGLE  +V +      ++     +   +        
Sbjct: 121 IAADTLSRRTARPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRD 180

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
           G+   +                   +   E  RL YV  TRA D+L++      +++   
Sbjct: 181 GLAEPLTPG----------------ALLAEERRLFYVAATRARDRLVVTAVKAPADDGDQ 224

Query: 677 NQRTWYDM------------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
             R   ++               +        +    +    +                 
Sbjct: 225 PSRFLTELGVEPRDVTGRPRRPLAVAALVAELRATTVDPAASEALREAAAHRLARLAALT 284

Query: 725 EREETIKQLMDEQKIPKKLFSPIK-----NDINEPYILNPSTIDT-KGKTNLESLLSDN- 777
           + E               L  P +      D ++P  L+ S +D       L+  L    
Sbjct: 285 DDEGQPLVPAAHPYRWWGLEEPTRSAVPLRDRDQPVTLSGSALDQLANTCALQWFLGREV 344

Query: 778 -------QTFNRGLIIHKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKN 823
                       G ++H L  +V  +         +            +A     +E   
Sbjct: 345 KADAPATAAQGFGNVVHVLADEVASSRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQ 404

Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFE 882
              ++ R L   ++       + SE      +   +  + I G +D++    +   ++ +
Sbjct: 405 ARAALERFLHWHVLDRGGRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEQDAEGRAYVVD 464

Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           +KT    P + E        QL++Y+  +++
Sbjct: 465 FKTGKGAPTKDEVAT---HPQLAVYQLAVRE 492


>gi|302542687|ref|ZP_07295029.1| putative ATP-dependent DNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460305|gb|EFL23398.1| putative ATP-dependent DNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 499

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/418 (13%), Positives = 120/418 (28%), Gaps = 55/418 (13%)

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           F       E+         + EL+             A  + VR+MT H +KGLE  +V 
Sbjct: 5   FETAARAEERTGGRGALNFLDELDAQDIAADTLSRRIARPDAVRLMTAHRSKGLEWRLVV 64

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +      ++     +   +        G+   +                   +   E  R
Sbjct: 65  VAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPG----------------ALLAEERR 108

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM----------------VYDSFHNDE 693
           L YV  TRA D+L++      +++     R   ++                V        
Sbjct: 109 LFYVAATRARDRLVVTAVKAAADDGDQPSRFLTELGVPPVDVTQRPRRPLSVAALVAELR 168

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK-NDIN 752
                   +   ++             +                 + +   S +   D +
Sbjct: 169 ATTVDPDASDALREAAAQRLARLAALRDEDGRPLVPAAHPSGWWGLYEPTHSEVPLRDRD 228

Query: 753 EPYILNPSTIDTK-GKTNLESLLSDN--------QTFNRGLIIHKLL-QVIFTLPEHKRK 802
            P  L+ S +D      +L+  L                G ++H L  +V          
Sbjct: 229 RPVALSGSALDQLVNTCSLQWFLGREVKADAPSTAAQGFGNVVHVLADEVASGRTPADLA 288

Query: 803 NFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
             +            +A     +E ++   ++ R L   +M         SE      ++
Sbjct: 289 VLMERLDSVWDALAFDAPWKSRQEKEHARAALERFLRWHVMERGGRTAVASEHGFDVTLD 348

Query: 857 CPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                + I G +D++    +   ++ ++KT        E     H  QL++Y+  +++
Sbjct: 349 AETYQVRIRGSMDRVEADAEGRAYVVDFKTGKQSVTRGEV---AHHPQLAVYQLAVRE 403


>gi|241759871|ref|ZP_04757971.1| exodeoxyribonuclease V beta chain [Neisseria flavescens SK114]
 gi|241319879|gb|EER56275.1| exodeoxyribonuclease V beta chain [Neisseria flavescens SK114]
          Length = 650

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 82/643 (12%), Positives = 174/643 (27%), Gaps = 132/643 (20%)

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +++ DI VLVR   +  +I    +      +I  V   R  + D      L AL  F L+
Sbjct: 1   MESGDIAVLVRTNNEAAMIAGKLK----QRRIQSVLLSRQSVFDSAEADSLSALIGFWLN 56

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +L   LF ++  +I+++    H+     E   +                  
Sbjct: 57  PRQTDWLRFVLTGVLFGYTAKEIYELNHNEHQLLKWLESSAEAMEKWRK----------- 105

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                                    + +       +    + L      E +   +   L
Sbjct: 106 -------GGIFAAVQQFAALHDIETRLLKGGNERSLTNYYQILELLAE-EDSQSRNPAAL 157

Query: 551 ISELEQY----------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              L +                    ++   V+I+T+H +KGL+ P+V+         + 
Sbjct: 158 HKWLNEQIGRARSGHFPSDAQTIRLESDEKLVKIVTMHASKGLQYPLVYCPFAWDTKDNS 217

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K   K+    +   +                    + HL      E  RLLYV +TRA +
Sbjct: 218 KENWKILHTENHETELLATSQT---------SEAELSHLTDEKTAEDLRLLYVALTRAEE 268

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           QL I   +N      +      + + D+            T+ +   +     +  + PE
Sbjct: 269 QLNIYAAANKYCTPNNPFAYLLEGLPDADRESVNQSYKSATDVVEMLKLNWQRFIKNAPE 328

Query: 721 NTPLEREETIKQLMDEQ-------------------------------------KIPKKL 743
           NT     E        Q                                         + 
Sbjct: 329 NTEFAFTEEAPPETVYQYSRQQDQAFGAHSIKRRDFDFIRHTSFTGLSRHTKSTDEQHEP 388

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
             P  +         PS       ++   +    +  N G+ +H++L+ +      + ++
Sbjct: 389 LQPAIDPAESADRAMPSENLPPPLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQS 448

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--------DSYSEVSVSG-- 853
            + +   +             L +++ +L+   +T  +              E+  +   
Sbjct: 449 EMIAEVLQRHSFED-----KWLPTVSAMLDTCRLTPLIGESLSQIPPTRRLPEMGFTLYM 503

Query: 854 ----------------------------KINCPKKDIIISGRIDQISIS-QQNIFIFEYK 884
                                        ++       ++G ID +      N+ + +YK
Sbjct: 504 DDFKLDNLRRWFASSEANLPTECVQAAQLLDFHDLQGYLNGFIDMVCQDSDGNVVLIDYK 563

Query: 885 THHHVPQEIEHIPY---------THIAQLSIYEKILKDSYPNK 918
           ++H       +             +  Q  IY   +   Y  +
Sbjct: 564 SNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAIARYYALR 606


>gi|307544596|ref|YP_003897075.1| UvrD/REP helicase [Halomonas elongata DSM 2581]
 gi|307216620|emb|CBV41890.1| UvrD/REP helicase [Halomonas elongata DSM 2581]
          Length = 732

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 99/779 (12%), Positives = 201/779 (25%), Gaps = 154/779 (19%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
            +    L +     + ++  L+         +  + L+QAS                L  
Sbjct: 79  VRTFHSLGHRLSQSLTRWGVLAPRQLLTADWQLERLLRQASLNA-------------LEG 125

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
               ++  +  +  +        +K    E  ++  R +     +               
Sbjct: 126 APEARETALDADKLEALAHFCGLVKAEMAEPAELYARLDFGDGTEH------FVGAFEQA 179

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
            E    ++ ++ + DLI      L   +  A +R ++   ++H++IDE QD ++ Q  ++
Sbjct: 180 -ETLLAEHGLMTYADLIYRPLRAL---EADAGLRDRVQGFLDHVIIDEYQDINVAQQRLL 235

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                + AVGD  Q IY + GA P  +L          T       
Sbjct: 236 AVLAG----------RQAAVMAVGDANQCIYEWRGAHPDTMLE-------NFTATFGAAH 278

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L  +FR    +  V +               +                         
Sbjct: 279 DYPLSTTFRHGHALALVANHAIDANRRRPDQICLAAP----------------------- 315

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                            D+   + + +  ++ +   ++                    + 
Sbjct: 316 -----------------DNPATQLAVNQGSQALLDELAAWQRQGR----------NLSEA 348

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL-TDHLAIKDLMALGRFILSQ---E 432
            +LVR       ++   +       I                ++ L             +
Sbjct: 349 CLLVRSWA----LSVPLQLALLRAGIPFRLAREDRFVFRLPLVEALAGYLMLARDASLLQ 404

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA----NCGISKFQHVIKYI 488
           D    + +L  P      + +  +  +  ET+   E                 +     +
Sbjct: 405 DPGHLLTLLSQPTPFVPRERLSALAARLAETQRWPERHDPLLEGIKPHQRRTLKRRWALL 464

Query: 489 HELIHIAQFCSPHDFFTLILGAKKG-----RQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
            EL   +   SP      ++   +      R       G E + +LD  +          
Sbjct: 465 CELPKRS-SWSPARLLGHVIEEVEAEKVLKRAAARRDKGEEDVRLLDVLIEQA-----GE 518

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            S L      L +             + V I TVH AKGLE P+V L  T  + F H   
Sbjct: 519 VSDLAAFTDLLRR-------PVENRDDGVLINTVHGAKGLEWPLVMLAGTNEEDFPHYTR 571

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                    EE  RL YV +TRA ++L+
Sbjct: 572 DNPLTP--------------------------------QRLEEERRLFYVAITRARERLV 599

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +          +    T +             ++         D    Y  +        
Sbjct: 600 MLHDGGEHRPSRFLGETAWQDGQRVAQRLAGSQETTPVAVARPDLVRRYLSALSPETPIE 659

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
           L  E      + E+    ++   + + +     +  S ++      +  +        R
Sbjct: 660 LPVEAAETPGVAERAADYRVGQRLNHAVFGEGEI--SVVEGDPANPVIEVRFLQAGRRR 716


>gi|300779588|ref|ZP_07089444.1| excision endonuclease subunit UvrD [Corynebacterium genitalium ATCC
           33030]
 gi|300533698|gb|EFK54757.1| excision endonuclease subunit UvrD [Corynebacterium genitalium ATCC
           33030]
          Length = 685

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 61/468 (13%), Positives = 131/468 (27%), Gaps = 75/468 (16%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A    +    Q   +    L            +++  +       DL  +++ 
Sbjct: 85  ARTFHAAALRQLRYFWPQVAGDMPWHLIDNKFPLVGRAARSVGLESHKDMVRDLLSEIEW 144

Query: 103 SQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDL 159
           ++   +             +           +   YE++K       LDF+DL+++    
Sbjct: 145 AKASLVTPESYAETIANSRREPPTDAEKVAAVYKRYEQSKTSPDGMALDFDDLLLHVAGA 204

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L+    +  +  +   +    ++DE QD + +Q  V+          +        L  V
Sbjct: 205 LEN---APAVAEEFRTQYQTFVVDEYQDVTPLQQRVL----------EGWLGQRDDLTVV 251

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IYSF GA P  +L   R             ++++L   +RST ++  + + V S
Sbjct: 252 GDANQTIYSFTGASPDYLLNFSRTYGH--------ATVVKLQRDYRSTPEVTDLANTVIS 303

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                                       ++L        +                    
Sbjct: 304 KATGR------------------AAGTRLELQGMRAPGPEPTF--------------ASY 331

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
           +     AR +A  I  +I             +  ++I +L R    + +         +D
Sbjct: 332 ADEPTEAREVAAQIRTLIDGG----------VPPREIAILYRLNAQSAVFEQTL----SD 377

Query: 400 YKISVVGNDRFILTDHLAIKDLMALG----RFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
             I           +   I++ + +     R     +D ++      +PL   S  +   
Sbjct: 378 AGIVYQVRGGEGFFNRPEIREAIGVLVQATRRNDLPDDPVTVARTAFAPL-GLSATEPEG 436

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
              +                    +   +   +  L   A+   P   
Sbjct: 437 AQQRERWQTLNALVELIADIVNTGEADSLPGVLQSLRQRAESKQPPAV 484



 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 61/234 (26%), Gaps = 37/234 (15%)

Query: 523 NEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            E    L+  +             SL  ++  L Q   + +       + V + ++H AK
Sbjct: 440 RERWQTLNALVELIADIVNTGEADSLPGVLQSLRQRAESKQPPAV---DGVTLASLHAAK 496

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VFLV    +     H  K                                    
Sbjct: 497 GLEWDAVFLVGLVEKTLPISHAIK---------------------------------AGD 523

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              EE  RL YVG+TRA + L +          + ++     +   +   D      +L 
Sbjct: 524 EQIEEERRLFYVGITRAREHLHLSWSFARQEGGRKSRDRSRFLDGIAPQLDVETTPDRLK 583

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                        +         E  E          + +      +   + PY
Sbjct: 584 RPKRCRVCGNPITTPAEKTLGRHEECEPTYNEAAFTALKQWRLDTAREKQHPPY 637


>gi|169841209|ref|ZP_02874322.1| ATP-dependent DNA helicase PcrA [candidate division TM7 single-cell
           isolate TM7a]
          Length = 156

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 16/147 (10%)

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +   + DF+D+I      +++      ++ ++ ++  +I++DE QDT+  Q  ++ +LT
Sbjct: 2   MQSAKLYDFDDMISQVVHAIEQNPS---LQAELQEKYQYIMVDEFQDTNHAQMRILHALT 58

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            +       +     L  VGD+ Q+IYSF GA+   +L  K+  +           +I L
Sbjct: 59  NN-----PANEGNPNLMVVGDDDQAIYSFQGADIGNILDFKKHYKN--------AKLITL 105

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGL 287
             ++RS   ILT   +V +       +
Sbjct: 106 IDNYRSAECILTAAREVITQGSERLEI 132


>gi|312194652|ref|YP_004014713.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311225988|gb|ADP78843.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 733

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 104/782 (13%), Positives = 212/782 (27%), Gaps = 160/782 (20%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
               ++   +      G       A  L+Q S         +L S          +    
Sbjct: 88  RAAGELRARLRGMDVEGVQARTFHAAALRQLSYFWPKVAGTALPSLVDSRIPLIAKAAGG 147

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            +    +  DL  +++ ++   +   D      K  + T+        L A YE+AK+  
Sbjct: 148 RRLDRSELRDLASEVEWAKATLVTPEDYPVAAEKAGRDTVWPPDAVAGLYAGYEKAKRAA 207

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            VLDF+DL++ T  ++++    +W+  ++  +  H ++DE QD + +Q  V+ +   D  
Sbjct: 208 GVLDFDDLLLLTAAVIEEH---SWVATELRTQYRHFVVDEYQDVNPLQQRVLDAWLGDRD 264

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      L  VGD  Q+IYSF GA P+ ++   R   +         +++ L   +
Sbjct: 265 S----------LCVVGDPNQTIYSFSGASPRYLVEFPRRFPE--------ATVVSLVRDY 306

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST  ++ + + +      A+  +         R           L        +     
Sbjct: 307 RSTPQVVALANALLDGAGTAEPPTGGLGAQAAPRGLAEVPARRPALVAMRPPGPEP---- 362

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                     +L + +  +  A+ +   I  +I             + A +I VL R   
Sbjct: 363 ----------TLLECADEAAEAKAVVARIGALIALG----------VPASEIAVLYRINA 402

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            +               +  +        D   ++D + L R  +               
Sbjct: 403 ASEAYEEAIGA----AGLPYLVKGGDRFFDRPEVRDAIRLLRAAVR-------------- 444

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
               S +            + +     +     +   +   + +  L  +A   +  +  
Sbjct: 445 ----SAEADRPAGLADVVADVLRAGGWRATAPSVGAERERWENLAALHRLAVALAAAE-- 498

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                                                   + L+  ++EL          
Sbjct: 499 --------------------------------------PEAGLERFVAELADRAAHQHVP 520

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  V + ++H AKGLE   VFLV     +                           
Sbjct: 521 TVEG---VTLASLHAAKGLEWDAVFLVGLADGMVP------------------------- 552

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                     L+        EE  RLLYVG+TRA   L +      +   +  +R+    
Sbjct: 553 ----------LVHAQSDEEIEEERRLLYVGITRARAHLTLSWALARTEGGRPRRRS---- 598

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                       +     +   +       +          R           +  +   
Sbjct: 599 -RFLDGLRPTRARSTPARAARDERGERGGDTRARVRAAVRCRVCGQALSGAAARTGRCET 657

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
            P + D      L         +    + +               L+ I         + 
Sbjct: 658 CPSRVDRALLNRLRAWRAAKAEELRQPAFVILTDAT---------LEAIAESRPASPADL 708

Query: 805 IT 806
           + 
Sbjct: 709 VA 710


>gi|269219899|ref|ZP_06163753.1| ATP-dependent DNA helicase II [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269210639|gb|EEZ76979.1| ATP-dependent DNA helicase II [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 667

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 89/663 (13%), Positives = 173/663 (26%), Gaps = 172/663 (25%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
               DR  + +  ++          L   YE+ K+   V+DFED+++             
Sbjct: 153 DDYPDRALSLQRDQAAGYPAEEIARLIRAYEDVKQNRGVIDFEDVLLLLIG---ILIDRP 209

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +   +  +  H ++DE QD S +Q  +++    +           R L  VGD  Q+IY
Sbjct: 210 DVARMVRDQYRHFVVDEYQDVSPLQHRLLQLWMGE----------RRDLCVVGDVSQTIY 259

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           SF GA  + +    R  +           I+EL   +RS+  I+   ++V +        
Sbjct: 260 SFAGASSRYLADFAREFR--------GAQILELIRDYRSSPQIVACANEVIA-------- 303

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                             G V+L  Q+ S          +          +         
Sbjct: 304 -------------PDASKGAVRLVSQLPSSVPVVFKEYGDDVEEAEVVAAE--------- 341

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
                I  +              +   DI VL R    +               +     
Sbjct: 342 -----ILQLREKG----------VGLADIAVLYRTNAQSAEFEAAL----GRAGVDYSIR 382

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
                     +++ M            +      ++       DD+  +  QR       
Sbjct: 383 GSERFFSRREVREAM------------VGMRAAARAEAGGALADDVKAVLMQRG------ 424

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
              ++    G    +     +  L+ +A                   ++     G  + +
Sbjct: 425 --WREQPPEGAGAARERWSALAALLKMA-------------------EEMERARGAGMAE 463

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            + E                                  +   + V + ++H+AKGLE   
Sbjct: 464 FVAELEERAQ-------------------------IQAAPETDSVTLASLHSAKGLEWHA 498

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VFLV     +                                     +     +   +E 
Sbjct: 499 VFLVGMSEGLMP-----------------------------------ISLAKGEDAIDEE 523

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL+YVG+TRA   L I            + R     +  ++           +    K 
Sbjct: 524 RRLMYVGITRAKQCLQISYAKGNGQR---SARKMSRFLQGTWPRPSEPVSRATSYRERKA 580

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
                  + H  +    E     +     +           + +    +  P+T+   GK
Sbjct: 581 AAARQFAAEHEDDVPLFEALVEWRLEASRRIDKPAYVILHDSTLRAVAVAKPATLGQLGK 640

Query: 768 TNL 770
              
Sbjct: 641 IRG 643


>gi|169824344|ref|YP_001691955.1| DNA helicase II [Finegoldia magna ATCC 29328]
 gi|167831149|dbj|BAG08065.1| DNA helicase II [Finegoldia magna ATCC 29328]
          Length = 613

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 76/168 (45%), Gaps = 21/168 (12%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   YE  KKKN  +DF+D++  + ++L + +   +I  +I ++     +DE QDTS 
Sbjct: 161 EQIYQEYESFKKKNFFIDFDDMLTKSFEILNEDE---YILKRIKRKYKFFQVDEGQDTSK 217

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+E+I+ +                LF V D+ QSIYSF GA+P  +L   +I       
Sbjct: 218 IQFELIKKIA----------YPENNLFIVADDDQSIYSFRGADPSYLLDFNKIFSN---- 263

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                SI  +  +FR +  I+   +      +N       ST     +
Sbjct: 264 ----ASIYYIDQNFRCSDKIVNASNLFIKQNKNRYNKDVTSTKASNKK 307



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 102/313 (32%), Gaps = 43/313 (13%)

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L RK   +  +T        D+      +D     +H  + D++ +  F  ++     
Sbjct: 334 AILYRKNISSIALTKYLHDQDIDFHSRYQKDD---FYNHFVLNDILKMIAFSENKTSVGL 390

Query: 437 FVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           F  +   L S +   S + +          + + +     +   + +F  +  +   +  
Sbjct: 391 FRDIYYKLNSYIKKTSINQLETYDESMPVLDRLLD-DSTLSRYYVDRFMDLKSFFSGIKR 449

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                        I          + +     +D L E      +         ++ I+E
Sbjct: 450 AKGSKKIDIIMNDIDYKTYIEDSVLLQNQKISLDHLVE----IYKYLFKDCECYEDFINE 505

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +E     I++    + + + ++TVH+AKGLE   VF++D     F               
Sbjct: 506 IESL-KKIQKESIKHTSNLNLLTVHSAKGLEFDEVFIIDLIDGEFPTNIDSN-------- 556

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                  K   ++  EE  R+ YV MTRA D+L +      ++ 
Sbjct: 557 -----------------------KKNYENIFEEERRMFYVAMTRAKDKLTLLSPKTRNSV 593

Query: 674 KKSNQRTWYDMVY 686
           +  + +   D++ 
Sbjct: 594 EVDSSQFLKDIIE 606


>gi|290957550|ref|YP_003488732.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
 gi|260647076|emb|CBG70175.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22]
          Length = 740

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 97/313 (30%), Gaps = 67/313 (21%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
             +       T K  +           + A YEE K++  V+DFED+++ T  +L+    
Sbjct: 162 RTVPSDYAAATAKHGREAPRDPAEIAQIYAVYEELKRERVVIDFEDVLLLTVGILQD--- 218

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
              I  ++  +  H ++DE QD S +Q  ++     D             L  VGD  Q+
Sbjct: 219 RQDIAEQVRSQYQHFVVDEYQDVSPLQQRLLELWLGD----------RDDLCVVGDASQT 268

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IYSF GA P  +L  +              ++++L   +RST  ++ + + + S      
Sbjct: 269 IYSFTGATPDHLLDFRHR--------HPGATVVKLVRDYRSTPQVVHLANGLLSQARGR- 319

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                +   +   S R                                    + +     
Sbjct: 320 ----AADHRLELISQRAPGPEP---------------------------RYTEYTDEPAE 348

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           A   A  I +++             + A +I +L R    +            D  +   
Sbjct: 349 AEGAARRIRDLVAAG----------VPAGEIAILFRTNSQSETYEQAL----ADAGVPYQ 394

Query: 406 GNDRFILTDHLAI 418
                   D   +
Sbjct: 395 LRGAERFFDRPEV 407



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 58/215 (26%), Gaps = 41/215 (19%)

Query: 523 NEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            E  + L   +N            +L +L++EL++               V + ++H+AK
Sbjct: 458 RERWESLAALVNLAHDFAAARPDATLGDLVAELDERANAQHAPTVQG---VTLASLHSAK 514

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE  VVFLV     +                                     +      
Sbjct: 515 GLEWDVVFLVGVAEGMMP-----------------------------------ITYARTD 539

Query: 642 STQEEYNRLLYVGMTRASDQLIICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
              EE  RLLYVG+TRA +QL +                  + D +              
Sbjct: 540 EQIEEERRLLYVGVTRAREQLSVSWALSRAPGGRPGRRPSRFLDGLRPGSTARAGRTGAG 599

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
            T  + +                 + R  +     
Sbjct: 600 GTGGVERGSAGGRTGQGTAGGTEAVARRTSRTPAR 634


>gi|38638032|ref|NP_943006.1| DNA helicase superfamily protein I [Ralstonia eutropha H16]
 gi|32527370|gb|AAP86120.1| putative DNA helicase superfamily I [Ralstonia eutropha H16]
          Length = 575

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 85/638 (13%), Positives = 167/638 (26%), Gaps = 140/638 (21%)

Query: 45  TILKKAQTLQQASQTQCIEERFS-LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
             ++    +   +     +   +    S    Q       +     +     +  ++ + 
Sbjct: 62  AAVELRDRILALAGADARKRLLAGTFHSLAYKQLGKGTGKLTDIVHDGVRFAIVGQILQE 121

Query: 104 QD---EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
                +           KM  S   S T+   L   Y+ A  +N  +DF+D++      +
Sbjct: 122 GGFDGKVEDAIAAIERAKMQLSDPPSGTVEAQLYEAYQSALARNGKIDFQDMLRLAVAGM 181

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +   ++ +        + ++L+DE QD   +Q                   +   +  VG
Sbjct: 182 QSGTIAPY-------RMTYLLVDEYQDCDSLQSRWTALHAA----------AGSIVTVVG 224

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY F  A      R      K           + L  ++RS A+IL V D+V   
Sbjct: 225 DDDQSIYGFRSA---LGFRGMEAFIKEF-----DARSVILGKNYRSHAEILDVADRVIRN 276

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            E+       +           G  G ++         ++    +  +            
Sbjct: 277 NEDRILKELVA---------HRGPGGAIEFKRLEDEYKEAVSAVEALTPVLRAGKTA--- 324

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                                                VL R  +    I      +   +
Sbjct: 325 ------------------------------------AVLARTNR----ILDPLEAVCRSH 344

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            +         + D      +  L   I  +  D     +L        E  +    T  
Sbjct: 345 GVKYYRAAGRSILDRPEAALMGDLLELI-QKSKDSGTDALLGFAGIGSHELQLLHTQTAA 403

Query: 461 HETETVYEY----IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
               ++           A   + K++  +K + E   + +      FF+L+L     R+ 
Sbjct: 404 KPEGSIPRKKNLVQAGIAEATVDKYRDFLKKLAEWQALFER----QFFSLVLD--GVREW 457

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
            +        D     +N              E +  L Q             + + + T
Sbjct: 458 MLKFV---ADDPGKRAINTAFDVLTRLNGPFSERLLFLRQKNNE------PADDALVLTT 508

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KG E   V ++     +   +                                   
Sbjct: 509 MHASKGREWSAVVVIRAEETIVPDEASP-------------------------------- 536

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                  + E  RL YV +TRA D L I         +
Sbjct: 537 -------ESEERRLFYVALTRARDWLQISTAKKNPTSR 567


>gi|300857964|ref|YP_003782947.1| hypothetical protein cpfrc_00546 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685418|gb|ADK28340.1| hypothetical protein cpfrc_00546 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302205693|gb|ADL10035.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis C231]
 gi|302330245|gb|ADL20439.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis 1002]
 gi|308275928|gb|ADO25827.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis I19]
          Length = 683

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 84/605 (13%), Positives = 170/605 (28%), Gaps = 168/605 (27%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               +++  +   +   DL  +++ ++   I   DR+  +   +   A+      +   Y
Sbjct: 116 GKAARSVGIETTTENVRDLLGEIEWAKATLIT-PDRYVEHVKDRKIPAAADKIAQVYRRY 174

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKR-----DVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           E+AK  +  +      +   D L        + S  I  +  ++    ++DE QD + +Q
Sbjct: 175 EQAKTTSEGM------LLDFDDLLLHTAGAIENSTAIAEEFREQYRTFVVDEYQDVTPLQ 228

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             V+ +   +             +  VGD  Q+IYSF GA P  +L   R          
Sbjct: 229 QRVLDAWLGE----------RDDITVVGDANQTIYSFTGATPNYLLGFSRKYPH------ 272

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              ++++L   +RST  +  + + V             + T ++    R           
Sbjct: 273 --ATVVKLQRDYRSTPQVTDLANTVIGKARGR-----VAGTRLQLEGMRPPGPDP----- 320

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                           + ++ D   +       AR +A  I  ++             + 
Sbjct: 321 ---------------EFCTFDDEPAE-------ARAVASRIKELLDKG----------VA 348

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           A +I VL R    + +          D  I               I+  M+    +  + 
Sbjct: 349 ASEIAVLYRINAQSAVFEQAL----ADAGIVYQVRGGGEFFQRAEIRQAMSQLVRVAQRT 404

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
              S        +   + + + +         ++            ++ +   + +  L 
Sbjct: 405 GTES--------IRGSALETLVR--------SSLAPLGLTPEEPEGTQARERWQSLDALA 448

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            +    +                                        +      +Q L+ 
Sbjct: 449 ELTVELT----------------------------------------QATPDLDIQGLLE 468

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           +L Q               V + ++H AKGLE   VFLV          H  K       
Sbjct: 469 QLNQRASAKHPPTMQG---VTLASLHAAKGLEWDAVFLVGLVDGTLPITHALKGG----- 520

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                       +   EE  RL YVG+TRA + L+         
Sbjct: 521 ----------------------------EPHIEEERRLFYVGVTRAREHLVCSWAKARQE 552

Query: 673 EKKSN 677
             ++ 
Sbjct: 553 GGRAT 557


>gi|239990572|ref|ZP_04711236.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 670

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/618 (12%), Positives = 174/618 (28%), Gaps = 66/618 (10%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L      Q +  + Y    +       L  A  L+  S  +       
Sbjct: 68  AAVELRDRMAARLGAARGPQATTFHSYCYALVRAHQDADL-FADPLRLLSGPEQDVTVRE 126

Query: 68  LLSS-FFLTQKF--------TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+    L ++           +  + T+    +   +      ++   + +        
Sbjct: 127 LLAGQLDLEKEGLAQVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLGPDALADF 181

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++     T A    A Y +      VLD+ +L+     L ++ +V+A     +    +
Sbjct: 182 ARRTGRPDWTAAAQFLAEYLDILDAQGVLDYAELVHRAVLLAERPEVAAE----LAGRYD 237

Query: 179 HILIDEVQDTSLIQWEVIRSLTED-----------FFVGKNTHSSPRTLFAVGDEKQSIY 227
            + +DE QDT   Q  ++ +L  +                    + RTL A GD  QSIY
Sbjct: 238 AVYVDEYQDTDPAQVRLLHALAGNQGRAPEYAQPTEKARGAGARAGRTLIAFGDPDQSIY 297

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA+   +L      ++     G    +  L  S RS A +L     +       +  
Sbjct: 298 TFRGADVNGILDFPDTFRR---ADGSPAPVGVLTTSRRSGAGLLAATRLLTRRMPLTRLP 354

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL-- 345
           ++         + R G  G V+ +    +  +              D +P +  A ++  
Sbjct: 355 ADTVRAHRELHAVRDG--GRVETYTYPTASTELDNIADLLRRAHLEDGVPWQEMAVLVRA 412

Query: 346 -ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR---------F 395
             R +      +             +    +  V         + T   +          
Sbjct: 413 GGRSLPAVRRALTSAGVPLEVDGDDLPLRHEPAVAPLLTALRAVATAALQCLPDLPDLPD 472

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ--EDDLSFVCMLKSPLFNFSEDDI 453
           L +   +  +           +  D       + S     D + +  L   L +      
Sbjct: 473 LPDRSGLPDLPEGDPGEAGAPSWLDTETALTLLTSPLGSMDAADLRRLGRALRDEERAAG 532

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLIL 508
            +I     E         +        + H  + +  L+  A+       +  +    + 
Sbjct: 533 IRIPAPSDELLARALAEPERLVTHDPAYAHGAQRLGALLRKARELLQGGGTAEEALWTLW 592

Query: 509 GAKKGRQQFIS---------RFGNEVIDVLDEFLN-FTLRNEQNSYSSLQELISELEQYP 558
                  +            R  +  +D +    +      E+         + E++   
Sbjct: 593 NGTPWPGRLERAALRGGAGGRNADRDLDAVCALFDTAARAEERTGGRGALNFLEEVDAQD 652

Query: 559 --PTIKRAHSANHNEVRI 574
                    +A  + VR+
Sbjct: 653 IAADTLSRRTARPDAVRL 670


>gi|167465694|ref|ZP_02330783.1| UvrD/REP helicase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 608

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/524 (14%), Positives = 154/524 (29%), Gaps = 82/524 (15%)

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +         +I L +++RS + IL + ++V S  E  +  +  +    +         G
Sbjct: 1   QFEQQYPAARVITLDVNYRSGSSILGLANEVISHNEERRPKTLYTGIREK---------G 51

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
           TVQ    + +                             A  I   I   +G        
Sbjct: 52  TVQYLSPLTTD--------------------------HEAEAILEHIKQQVGKGKR---- 81

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +  DI +L R    +         L  +    V   +  +   H  I+ ++   R
Sbjct: 82  -----KYGDIAILHRTASYSRAF---FERLLMEDIPFVQYGNSDLFYRHWLIRPVLNHLR 133

Query: 427 FILSQEDDLSFVCMLKSPLF----NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
             L+  D  +   +L +         S     +    +                   K  
Sbjct: 134 LALNSRDMKACEGVLLTLYIAKEKGASWIREKEKKKAKKWPLIHLMDHPDLKENQKEKLM 193

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             +K I  L       +       I         +      +  + L E L+  L     
Sbjct: 194 ERLKMIKSLQAFKPEEAIRQI--RIKFYDAFIDAYDPEPDTQYKETLKEMLDE-LETSAR 250

Query: 543 SYSSLQELISELEQYPPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++ L+E +  +++                 + +++MT+H +KGLE PVV+L+    +V 
Sbjct: 251 RFTGLEEFLGFVDRITDKYMVMESLKKEDESDALKLMTIHRSKGLEFPVVYLIGVSERVL 310

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H    K         +                     +H   +  EE  RL YV +TRA
Sbjct: 311 PHSTSLKKEGCKDNRFEG--------------------EHGAAAALEEERRLAYVAVTRA 350

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            ++L I        ++    R    ++        RV         +  +  +       
Sbjct: 351 KEELYISSPGYYRGKQAHVSRF---ILQPFESRRSRVSNTAQPVPASAAKKPSAIQDRSM 407

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIK-NDINEPYILNPST 761
           PE      ++T++  +           P +    ++P +++P+ 
Sbjct: 408 PEMGNASDKKTVRTQVYTAGYGTNSSQPERKARHDQPKLVSPAA 451


>gi|302380636|ref|ZP_07269101.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3]
 gi|302311579|gb|EFK93595.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3]
          Length = 613

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 21/168 (12%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   YE  KKKN  +DF+D++  + ++L + +   +I  +I  +     +DE QDTS 
Sbjct: 161 EQIYQEYESFKKKNFFIDFDDMLTKSFEILNEDE---YILKRIKHKYKFFQVDEGQDTSK 217

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+E+I+ +                LF V D+ QSIYSF GA+P  +L   +I       
Sbjct: 218 IQFELIKKIA----------YPENNLFIVADDDQSIYSFRGADPSYLLDFNKIFSN---- 263

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                SI  +  +FR +  I+   +      +N       ST     +
Sbjct: 264 ----ASIYYIDQNFRCSDKIVNASNLFIKQNKNRYNKDVTSTKASNKK 307



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 102/313 (32%), Gaps = 43/313 (13%)

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L RK   +  +T        D+      +D     +H  + D++ +  F  ++     
Sbjct: 334 AILYRKNISSIALTKYLHDQDIDFHSRYQKDD---FYNHFVLNDILKMIAFSENKTSVGL 390

Query: 437 FVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           F  +   L S +   S + +          + + +     +   + +F  +  +   +  
Sbjct: 391 FRDIYYKLNSYIKKTSINQLETYDESMPVLDRLLD-DSTLSRYYVDRFMDLKSFFSGIKR 449

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                        I          + +     +D L E      +         ++ I+E
Sbjct: 450 AKGSKKIDIIMNDIDYKTYIEDSVLLQNQKISLDHLVE----IYKYLFKDCECYEDFINE 505

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +E     I++    + + + ++TVH+AKGLE   VF++D     F               
Sbjct: 506 IENL-KKIQKESIKHTSNLNLLTVHSAKGLEFDEVFIIDLIDGEFPTNIDSN-------- 556

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                  K   ++  EE  R+ YV MTRA D+L +      ++ 
Sbjct: 557 -----------------------KKNYENIFEEERRMFYVAMTRAKDKLTLLSPKTRNSV 593

Query: 674 KKSNQRTWYDMVY 686
           +  + +   D++ 
Sbjct: 594 EVDSSQFLKDIIE 606


>gi|239908585|ref|YP_002955327.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
 gi|239798452|dbj|BAH77441.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1]
          Length = 1055

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 105/684 (15%), Positives = 188/684 (27%), Gaps = 172/684 (25%)

Query: 8    SLNESYEL-IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF 66
               E+    +     P      + + +   L +  G       A T  + +  Q  E   
Sbjct: 481  RAAETAARHVLTVAGPGTGKTHTLLARIREL-LSHGVAADKILAVTFTRRAAAQLRERLA 539

Query: 67   SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
               +   + +  T     +         +     + S      + +        KS    
Sbjct: 540  RDDAGGDIPRADTLHALALAALAEAGGSEPVVLSEDSARRLFDLANPELPRSRAKSAWQE 599

Query: 127  LTLAKY-----------------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            L+LA+                    A Y EAK++  + DF DL+            +A  
Sbjct: 600  LSLAREKMAPPVLTPQGMAGPGLYAARYAEAKRQARLSDFTDLLEGWL--------AAIA 651

Query: 170  RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              +      H+L+DEVQD + +Q  +I ++               +LFA+GD  QSIY F
Sbjct: 652  SGRSRPAWTHVLVDEVQDLTPLQLALIAAVCGRDRA---------SLFAIGDPDQSIYGF 702

Query: 230  HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             GA        +              + I L  +FRS A +LT+   VF        L+ 
Sbjct: 703  RGATGGVREALRAFWP--------DLTEIALSDNFRSAAPLLTLAAGVFR---GRAALAS 751

Query: 290  DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
             +   +            ++L+                          +  +A+  A  +
Sbjct: 752  RAGPEV-------QAHCRIELY--------------------------EAPTAAAEADWV 778

Query: 350  AYTISNMIGTD--TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
            A  +S ++G    T+  +  ++ +   DI VLVR       +    R   +   + V   
Sbjct: 779  AQRLSGLVGGSSLTLSRDFSEKHLAPGDIAVLVR----FSGLIGPLRQALSRVGLPVSVP 834

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            +     +   +     L           +       P                       
Sbjct: 835  EAEAFFNEPRV---RLLLAAAGLPYGIPAPETAGTPP----------------------- 868

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
            +  ++    G +     ++ I     +     P         A  G Q  ++        
Sbjct: 869  DIPERLLEKGPAGLTAFLEGILPFDALFWQGGPFRELCRAYEAHGGWQGLLAYV---AAQ 925

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
               E +                                     +VRIM++H AKGLE   
Sbjct: 926  NELELVGA--------------------------------RAEKVRIMSIHAAKGLEFGA 953

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            VFL      +        +   P                                 ++E 
Sbjct: 954  VFLPALEDGLLPFAGSDFLSGKPGHPAGRM-------------------------DEDEE 988

Query: 648  NRLLYVGMTRASDQLIICKHSNTS 671
             RL YVG+TRA  +L +       
Sbjct: 989  RRLFYVGLTRAKSRLYLSHALRRE 1012


>gi|169796400|ref|YP_001714193.1| putative helicase [Acinetobacter baumannii AYE]
 gi|213156862|ref|YP_002318907.1| UvrD/REP helicase [Acinetobacter baumannii AB0057]
 gi|169149327|emb|CAM87211.1| putative helicase [Acinetobacter baumannii AYE]
 gi|213056022|gb|ACJ40924.1| UvrD/REP helicase [Acinetobacter baumannii AB0057]
          Length = 593

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 83/609 (13%), Positives = 168/609 (27%), Gaps = 142/609 (23%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L            KN     +      +         ++   +++ N  +    T  +  
Sbjct: 111 LQGLLPNDFKIANKNECNLAVENAYKAIYNDGGDPHAQWEFAKEKRN--REVDRTHPAWK 168

Query: 129 ----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                       YE   +K  ++DF+D+ +    ++K+     WIR+ ++     + +DE
Sbjct: 169 GHNKELAEFIEEYESELRKKGLIDFDDMPLIAFKMIKEN---LWIRHALECRFPILFVDE 225

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD   +  E++  L  D             LFAVGD  QSIY F GA P+ +       
Sbjct: 226 YQDLGHVLHELVHLLCFD---------GKIRLFAVGDADQSIYGFTGANPELLQSLTER- 275

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I+L  ++RS   I+                                 
Sbjct: 276 --------DDVETIQLRYNYRSGTRIVKA------------------------------- 296

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             ++   ++  +    +  P+ E   +      +E      A  I            +  
Sbjct: 297 --SLAALDEERNYETPEGTPEGEIIFNPVKGTLEEQ-----ANFIVDK---------LLG 340

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
               + ++ + I +L +       I       K    I     D   L           L
Sbjct: 341 ELASKGLKNEQIAILYKAAWLGNKIVEALEAKK----IPYHRTDSNSLIKRS-----SKL 391

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             FI      ++       P FN        I    + T+   + +       + K + V
Sbjct: 392 ACFIEDCAKWITGGWKRAEPPFNKLSKQALNIVYGNNYTQAEKQILDLQLINFLQKSRFV 451

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
            +  +  +                      ++ ++ + +   + + E+    L   + + 
Sbjct: 452 SETANAWLIR------------------FEKELMAHWSSICRNNIQEW-EVCLDLIKKTS 492

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             + +           +    +     + + T H++KG E   V +      +   K   
Sbjct: 493 PQMNK------DMSLELFSGKTEGTGRLILTTFHSSKGREFDAVIIFGANKGILPDKRDL 546

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           K                                     + +E  RL YV +TR    L +
Sbjct: 547 KTF----------------------------------KSLKEVKRLFYVAVTRPKTILHL 572

Query: 665 CKHSNTSNE 673
              S   +E
Sbjct: 573 VYESKKHSE 581


>gi|291301848|ref|YP_003513126.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
 gi|290571068|gb|ADD44033.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728]
          Length = 697

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/473 (16%), Positives = 142/473 (30%), Gaps = 74/473 (15%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI---EERFSLLSSFFLTQKFTPQ 81
                ++   +     TG       A  L+Q           E   LL S +        
Sbjct: 67  ARAAGELRDRLRDLGVTGVNARTFHAAALRQLRYFGPRLFGGELPELLDSTWKFVSIAAA 126

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYLNAHYEEA 140
           +  IT+    K+ DL  +L  +Q   I   +                +      A Y EA
Sbjct: 127 RAGITRMDKTKNRDLASELDWAQACLITPDEYPAAIAKADRIPPMDASDVAKAYAAYLEA 186

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           KK+  V+DF DL+ +T   L++      I  +I  +    ++DE QD + +Q  ++ +  
Sbjct: 187 KKRAKVMDFADLLGHTATALEENPD---IAEQIRSQYRLFVVDEYQDVNPLQQRLLDAWL 243

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            +             L  VGD  Q+IY+F+GA  + ++   R           +  ++ L
Sbjct: 244 GE----------RDDLTVVGDASQTIYTFNGATSRYLVNFTRRFP--------EAHVVRL 285

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              +RST  ++ + + V +                          G  +L  Q++ Q   
Sbjct: 286 VRDYRSTPQVVALANDVIA----------------------AAGGGESKLRLQLIGQRAD 323

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              P  +++                    A   + +IG            + A +I VL 
Sbjct: 324 GPKPSFDTYPDEAAEAAAV----------ADRCARLIGQG----------VPASEIAVLY 363

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED---DLSF 437
           R    +           +D  +  V            I+  +   R     +D    L  
Sbjct: 364 RTNAQSEAYESAL----DDVGVPTVVAGAERFFQRAEIRSAIVALRQATHTDDGSLPLPL 419

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                     +  D        R   E V   ++   +         ++ +  
Sbjct: 420 TVATAMDAIGWRADAPPTGGAARERHEAVAALVRLAEDHAELSLGEFVEELGR 472



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 41/160 (25%)

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
            E  + +   +     + +        L   +E+        H+ +   V + ++H+AKG
Sbjct: 442 RERHEAVAALVRLAEDHAE------LSLGEFVEELGRRAAAQHAPSMEGVTLASLHSAKG 495

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   VFLV            +                                    ++
Sbjct: 496 LEWDAVFLVGLAEGTLPTSRART-----------------------------------RA 520

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
            QEE  RLLYVG+TRA  QL +    + ++  +  + + +
Sbjct: 521 QQEEERRLLYVGITRARRQLFLSYGLSRASGGRPREASSF 560


>gi|297588322|ref|ZP_06946965.1| DNA helicase II [Finegoldia magna ATCC 53516]
 gi|297573695|gb|EFH92416.1| DNA helicase II [Finegoldia magna ATCC 53516]
          Length = 610

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 21/168 (12%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   YE  KK N  +DF+D++  + ++L + D   +I  +I ++     +DE QDTS 
Sbjct: 161 EQIYLEYENFKKNNFYIDFDDMLTKSFEILNEDD---YILKRIKRKYKFFQVDEGQDTSK 217

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+E+I+ +                LF V D+ QSIYSF GA+P  +L   +I       
Sbjct: 218 IQFELIKKIA----------YPENNLFIVADDDQSIYSFRGADPSYLLDFNKIFP----- 262

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                SI  +  +FR T  I+   +      +N       ST +   +
Sbjct: 263 ---DASIYYIDQNFRCTDKIVNASNLFIKQNKNRYNKDVTSTKSSDKK 307



 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 99/310 (31%), Gaps = 37/310 (11%)

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L RK   +  +T        ++      +D     +H  + D++ +  F  ++     
Sbjct: 334 AILYRKNISSIALTKYLHDQDINFHSRYQKDD---FYNHFVLNDILKMIAFSENKTSVGL 390

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
           F  +         +  I ++ T   E+  V + +   +          +  +       +
Sbjct: 391 FRDIYYKLNSYIKKTSINQLETY-DESMPVLDRLLDDSTLSRYYVDRFMD-LKSFFSGIK 448

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                    +I+     +         +   +  + L    +         ++ I+E+E 
Sbjct: 449 RAKGSKKIDIIMNDIDYKTYIEDSVLLQNQKISLDLLTEIYKYLFKDCECYEDFINEIEN 508

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               I++      + + ++TVH+AKGLE   VF++D     F                  
Sbjct: 509 L-KKIQKDSIKQTSNLNLLTVHSAKGLEFDEVFIIDLIDGEFPTNIDSN----------- 556

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   ++  EE  R+ YV MTRA D+L +      ++ +  
Sbjct: 557 --------------------NKNYENIFEEEIRMFYVAMTRAKDKLTLLSPKTRNSIEVD 596

Query: 677 NQRTWYDMVY 686
           + +   D++ 
Sbjct: 597 SSQFLKDIIE 606


>gi|51244734|ref|YP_064618.1| ATP-dependent DNA helicase II (Rep) [Desulfotalea psychrophila
           LSv54]
 gi|50875771|emb|CAG35611.1| related to ATP-dependent DNA helicase II (Rep) [Desulfotalea
           psychrophila LSv54]
          Length = 770

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 82/679 (12%), Positives = 184/679 (27%), Gaps = 135/679 (19%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           S  +++    K       ++  ++  + +L +      + + A    +    + + E  +
Sbjct: 58  SARDAFAASLKKRLRKTGYRGPEVRTFHALGLRLVESFVRRGALPAHRLVTEEGLRENLA 117

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 L  +                  L++ L+        ++ +  +       +   
Sbjct: 118 RRVGQSLVGQGEAW-------------SLRDDLEDFLTFIDLVKAKLASPAQVAREIGLP 164

Query: 128 TLAKYLNAHY---EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                    Y   E+ + K  +  + +LI      +++    A +R  ++  + HI++DE
Sbjct: 165 EKFASFIEGYSLFEDLRLKEKIRFYSELINEPVLAMEED---AELRAWVENRVEHIIVDE 221

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD S  Q  +++ +            S   +  VGD  Q IY + GA+P+         
Sbjct: 222 YQDISNCQQGLLKMVAG----------SRAQVMVVGDADQCIYEWRGAKPE-------YI 264

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                          L  SFR    +    + + +   +       S     +      +
Sbjct: 265 STLFAEDFPAPRDYTLSFSFRYGHQLSLAANHLIAHNIDKSRTLCRSHPLNVNTQIFTAE 324

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
           +   +    V                                      + +   +     
Sbjct: 325 LVAGERHPLVG------------------------------------IVRDWQDSGR--- 345

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                     +I VLVR    +  +         +  I         +     I  L+  
Sbjct: 346 -------SRAEIAVLVRLYGMSVPVELAL----LEAGIPYQLQGGRTVFRCPEILALIGY 394

Query: 425 GRF-------ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY------IQ 471
            RF       I  QE       ML  P     +  +  +      +             +
Sbjct: 395 LRFCDGSIVEISGQERKALVQEMLVQPHLGLKKGQMEHLLVSITASPLAAPALILGLVNE 454

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLD 530
                   +   +      L+              ++        +      +V  +   
Sbjct: 455 AMPAYQRKRLARLSDCWQWLVAEPGEARADKVLKRLVARLDLYAFYRDFASRQVSGENRI 514

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           +     +   +     + + + E ++    +K++  A  + + I ++H AKG E P+V L
Sbjct: 515 QICRSLIAFAEERARGVADFLLEFDR----LKKSDGAGADPLLITSIHRAKGCEWPLVIL 570

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F  +  +K     +  D                               +  RL
Sbjct: 571 PGLEEGSFPFRRQQKESPSFTEVD-------------------------------DERRL 599

Query: 651 LYVGMTRASDQLIICKHSN 669
            YVGMTRA ++L +    +
Sbjct: 600 FYVGMTRAIERLYLLHPRD 618


>gi|315927499|gb|EFV06836.1| ATP-dependent DNA helicase PcrA [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 305

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 27/208 (12%)

Query: 82  KNIITQEINKKSPDLKEKL---KKSQDEFIKIRDRFNTYKMF--KSTLASLTLAKYLNAH 136
           K++I  +      D+ + +   K        + +  N  K    +        A      
Sbjct: 119 KDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKEHNFEKYQNEYKFAN-YYRA 177

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YEE   K   +DF+DL++ +N +L+     A  +  +    N+I +DE QDT+ +Q++++
Sbjct: 178 YEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLL---YNYITVDEYQDTNTLQYKIL 234

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           ++L                +  VGD+ QSIYS+ GA+ + +L  +   +           
Sbjct: 235 KNLCCM----------HENITVVGDDDQSIYSWRGAKIENILNFQNDFKN--------VK 276

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENA 284
           +++L  ++RS   IL   + + S  E  
Sbjct: 277 LVKLEQNYRSVGTILQAANNLISHNEQR 304


>gi|212716229|ref|ZP_03324357.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660741|gb|EEB21316.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM
           16992]
          Length = 1398

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/440 (14%), Positives = 136/440 (30%), Gaps = 45/440 (10%)

Query: 32  NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK--NIITQEI 89
           N      + +G  +  +  Q ++   +    +   +L      T++    K    + ++ 
Sbjct: 167 NAISGAMIGSGCTSFDEAVQRVRDWDEAFIRQVDKALDGETVPTEQPKSPKPPKRLKKDS 226

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
           +       EK ++                  +       L   L   Y   K+   + +F
Sbjct: 227 DADYEKKLEKYRELGHSMCVFNSTQLASVAKQRN-----LLLDLVLDYHAEKRACNMAEF 281

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D  I    L+ +      I     +  +H+L+DE QDTS  Q  ++ +L       ++ 
Sbjct: 282 SDFTIAAFQLVSRFPS---IGATYRKRYSHVLLDEYQDTSTTQAALLSALFHADDTHRSA 338

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
            +      AVGD  QSIY++ GA P      +                  L ++ R++  
Sbjct: 339 VN------AVGDPFQSIYAWRGASPGAFRMLQHDF-----GMDATRKPFALTVTRRNSRM 387

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           +L   + +              T  +R  + R+      ++    +S  +          
Sbjct: 388 VLEAANNL--------------TKPLRLPARRLSSSLMREVDVPALSNIEEAPEGTIGVL 433

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                    ++        IA      + T +              + VL R +      
Sbjct: 434 GFATFGQEVDAVVRFAKHAIA------LHTPSARDLDHGAKNNRPHVAVLFRSKGTMSKY 487

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                       ++ +   +  L +   ++D+ AL   +    D  + + +L +P F   
Sbjct: 488 AEALE----QAGLTTLVVGQAALLERPEVRDVFALLHVVSDHTDSAALMRLLATPRFAVE 543

Query: 450 EDDIFKICTQRHETETVYEY 469
            DD+  +        TVY Y
Sbjct: 544 ADDLQALADTAERVNTVYRY 563



 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 65/214 (30%), Gaps = 44/214 (20%)

Query: 779  TFNRGLIIHKLLQVI-----------------FTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                G   H   +                         + ++ + +   +N  +   +  
Sbjct: 1183 AAQLGTQFHAWAERFIMADVDIACIVGGAEGNGNTRVAESRSSMLAEIKRNNGMQSQENN 1242

Query: 822  KNLLLSITRLLENPMM----------TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
              +  +    +EN  +            A    +++E  +   +       II+G++D +
Sbjct: 1243 AAVENAAENAMENNALFDWQQRLATSAWAQRKPAWAERQIVVNMPQL--GTIINGKLDAV 1300

Query: 872  SISQ-------QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVC 922
                       +   I ++KT    P++ E I    + QL +Y  +L      P  ++  
Sbjct: 1301 FFGGLNEKDQSKQYTIVDWKTGK-KPRKKEEIQEK-LVQLDMYRLLLSAMEGVPLDAIDA 1358

Query: 923  LLIY----VSEPKVFIIPQNKLNKAFAEISTKIP 952
             L Y    V   +          +  AE+S  IP
Sbjct: 1359 CLYYLSEPVEGNRQLNAADKTEEEILAELSYGIP 1392



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 6/130 (4%)

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN----SYSSLQEL 550
           A            + A        +         +D  +       Q        SL+  
Sbjct: 683 ALNLDIDMLLARHMRADHAEAMLDASHVALAKSPIDAVMKLVDTYMQEIASQGLPSLRAF 742

Query: 551 ISELEQ--YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           IS ++                 +V +MTVH +KGLE   V +V      F       + +
Sbjct: 743 ISWVDSLRDASEENAVAPDVPVDVVLMTVHQSKGLEWDAVAVVGMTDGGFPSNKGDNLSV 802

Query: 609 MPSLNDDPGI 618
           +       G 
Sbjct: 803 VVDETHLNGF 812



 Score = 38.4 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
           +   +    + +     +   +    +  RL YV +TRA  + ++         +    
Sbjct: 886 VDDMEGVDPDGLYLTQSEEYGRRLHADERRLAYVALTRARHEALLTYSETNVESRDPRA 944


>gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
 gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens C str. JGS1495]
          Length = 876

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 124/367 (33%), Gaps = 74/367 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   +++  LDF DLII T +L K       +   +  +  +I IDEVQDTS+I
Sbjct: 207 ELVTLYDSKLREDHALDFNDLIILTKELFKDE----KVVRALKNKFKYINIDEVQDTSII 262

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           ++ +I  L E              +   GD  Q+IYS+ G++P+ +  +    +++    
Sbjct: 263 EYSIIEKLFE-----------GNNVLICGDFFQTIYSWRGSDPEMIFNK---FKEKYNPV 308

Query: 252 GQKFSIIELPLSFRSTADI----LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 I    ++R+T ++    L  ++  FS                            
Sbjct: 309 E-----IVFSKNYRATKNLNKASLEFLNNAFS--------------------------SK 337

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V    +     +S+ + ++ S         +       AR I   ++ +           
Sbjct: 338 VSTMYKDGILAESKEDGEKISLK-------ETRGLREEARFIFDYVNKLCEKGEDLKK-- 388

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK--ISVVGNDRFILTDHLAIKDLMALG 425
                   + VL R       ++     +          +  D+F       +KD++A  
Sbjct: 389 --------VCVLTRDNNYNIGLSEELYQIGGYEGADFEFILVDQFKFFRRQEVKDILAFL 440

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQH 483
           + I ++ D LS   ++           +  I     +     + +YI         KF  
Sbjct: 441 KLIANRYDSLSLKRIVNRLPTGIGMRTLEAIESYKYKEVGIRLADYIDPLVLEYGEKFSL 500

Query: 484 VIKYIHE 490
           +I    +
Sbjct: 501 LINAFEK 507



 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 40/200 (20%)

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
               +  +  F  + K ++EL  IA+   P++    ++     +  +      E ++ L 
Sbjct: 684 MALMSKHLKAFTAISKKLNELFQIAESKRPYELVACVMNGFNIKSMYAGDENKEKLNRLR 743

Query: 531 EFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           +        +  S  +   L+       L          +      + I+TVH AKGLE 
Sbjct: 744 DLYALFRDLDDKSKGNRDALLDIIRITGLSNGELESLIINRTKKPRIPIITVHQAKGLEF 803

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VFL    +  F                                        +K+    
Sbjct: 804 DTVFLAGIQNNTFPS-----------------------------------YMSIKEGNLA 828

Query: 646 EYNRLLYVGMTRASDQLIIC 665
           E  R+ YV +TRA  +L+I 
Sbjct: 829 EEKRVFYVAITRAKKRLVIT 848


>gi|47716797|gb|AAT37576.1| putative ATP-dependent nuclease/helicase [Sinorhizobium meliloti]
          Length = 262

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 7/197 (3%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
           WP       D+    S +           A  L+          R+S L   F      P
Sbjct: 36  WPGHSNDYIDLGIAPSAARSPSA-----IADGLRAVRAIDDAATRYSKLVELFFNGGGKP 90

Query: 81  QK--NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
           +     +   + + +P L+ ++++++   +   DR +  +M+ +T A+L LA+ LN  YE
Sbjct: 91  KAESAFMNAAMRRAAPQLELRVEEARSHMLACVDRLSIVQMYGATRAALVLAERLNRDYE 150

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
             KK    LDFEDLI  T  LL + DV AW+ YK+DQ I+HIL+DE QDTS  QW    S
Sbjct: 151 ALKKARSQLDFEDLIHRTAALLARSDVGAWVHYKLDQGIDHILVDEAQDTSPAQWTNHSS 210

Query: 199 LTEDFFVGKNTHSSPRT 215
                F     +   R 
Sbjct: 211 SLAGGFSFAGENXRVRD 227


>gi|319957659|ref|YP_004168922.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511]
 gi|319420063|gb|ADV47173.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511]
          Length = 915

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 143/442 (32%), Gaps = 43/442 (9%)

Query: 11  ESYELIYKDLWPLPYFQ-----VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           ES   +Y     LP F      +  +   +     +    + +   +   A +       
Sbjct: 171 ESLASLYAQDPLLPPFPEGDGTLRGLEGEIEALRASLYERVQQVGAS-ATAVRNFAPATV 229

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             L +          +     + + K       ++++   +   +  R+          A
Sbjct: 230 AELFAKSVFNHPSLEEHRNYRKYLPKD-----PRIEEEYQQLRTLLGRWAAA----RERA 280

Query: 126 SLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            L     L  HY   +    K   +LDF+DL      LL +      + +++D    HIL
Sbjct: 281 VLHRLGRLYDHYRNTRISRAKSRNMLDFDDLGYFAYRLLYESLSKDLLYFRLDSRFRHIL 340

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDTS +Q+ +++ L ++ F GK   S  RT F VGD KQS+Y F G   +   R  
Sbjct: 341 LDEFQDTSTLQFLLLKPLIDEIFAGKG-QSDFRTFFYVGDTKQSLYRFRGGVEELFDRVA 399

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                          +  L  ++RS   I+  V++ F+            +    +    
Sbjct: 400 EHYG---------IEVNPLSHNYRSAKGIVESVNRWFAEVMPGYLPQIPQSGKEGYVEVL 450

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             +    +   Q +   D+  +P++ ++    +   +E                 +    
Sbjct: 451 EAEEPLAEATAQALRLIDAGIDPERIAFLVATNKEGKELQE------------RCVEAGI 498

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLT--RFLKNDYKISVVGNDRFILTDHLAIK 419
                    ++    +  + +  +            L          +  +       ++
Sbjct: 499 PTVLQTSSSLRTLPQIAALVRMAEHLYREEALDAEALLRRSGRKEHPDLGWYRPSMRPVE 558

Query: 420 DLMALGRFILSQEDDLSFVCML 441
            L  L     + ++D +F+ +L
Sbjct: 559 VLHRLLESYAAFDNDPNFLRLL 580



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/517 (13%), Positives = 159/517 (30%), Gaps = 84/517 (16%)

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC---GISKFQHVIKYIHELI 492
           +    L+        + I  +     E + + E   +         S     +  I  L+
Sbjct: 459 ATAQALRLIDAGIDPERIAFLVATNKEGKELQERCVEAGIPTVLQTSSSLRTLPQIAALV 518

Query: 493 HIAQFCSPHD-FFTLILGAKKGRQQFIS----RFGNEVIDVLDEFLNFTLRNEQNS---- 543
            +A+     +      L  + GR++       R     ++VL   L      + +     
Sbjct: 519 RMAEHLYREEALDAEALLRRSGRKEHPDLGWYRPSMRPVEVLHRLLESYAAFDNDPNFLR 578

Query: 544 ----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                +  + L   LE++  +            RI+T+H +KGLE   V L+D  S   S
Sbjct: 579 LLEFAAGYESLPEFLEEFESSRIGVAPHTLRGARILTIHGSKGLEFDYVILLD-RSGRGS 637

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +    +               I   +  +   ++L++  K + +++   LLYV +TRA+
Sbjct: 638 SERDALIPRYNENLHIERFFYRISGRERFDETYAELLEERKAAAEKDRLNLLYVALTRAA 697

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           + +I+          K  +++ ++ +         + KI+  + + ++            
Sbjct: 698 EGMIVL---------KKPEQSIFEPLGMVPMRRGELPKIEDESKVQEE------------ 736

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                             +IP  + S        P             +  E    D + 
Sbjct: 737 ----------------APRIPDVVLSRYGRQEEPPT------------SEDEGEGPDYEA 768

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
              G  +H  L+++        +  + +   +       ++   +   +  L+++   T 
Sbjct: 769 ILFGTALHYALEMMEPFGPEGIEGALDAVRNRYGAQLSEEQIAAIASRMEALMQDEPFTQ 828

Query: 840 AM-SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
            +       E  ++ +        ++   ID +        I +YK+             
Sbjct: 829 MLRGARIQKEQPLAHR------GKLLQ--IDLLLDYGDRFRILDYKSSR-------KFAE 873

Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFI 934
            H  QL  Y + ++     +     L+Y   E     
Sbjct: 874 HHRRQLRTYIEAVESI-TGRPAEGALVYLTEEGVEIE 909


>gi|207108775|ref|ZP_03242937.1| rep helicase, single-stranded DNA-dependent ATPase (rep)
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 297

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 43/278 (15%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF-SLLSSFFLTQKFTPQK- 82
              +       S  M        K +  ++  +              +  L Q    +K 
Sbjct: 46  EILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKL 105

Query: 83  -----NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF----KSTLASLTLAKYL 133
                +      + K P   + L      +     + +                 L + +
Sbjct: 106 LESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSNKNPEHTPYAALYENI 165

Query: 134 NAHYEEAKKKNCVLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              +E  KKK+  +D+ DL++     +L++                 +L DE QDT+ +Q
Sbjct: 166 LEEFENTKKKHNYIDYNDLLLLFKKAMLERP-----------SPYKEVLCDEFQDTNPLQ 214

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ ++            +P +LF VGD  QSIY+F+GA+   +    +  +       
Sbjct: 215 ESILDAI------------NPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKN------ 256

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
               +  L  ++RS+ +IL + ++V    E     + +
Sbjct: 257 --AQVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLE 292


>gi|220903308|ref|YP_002478620.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
 gi|219867607|gb|ACL47942.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans
            str. ATCC 27774]
          Length = 1174

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 93/619 (15%), Positives = 169/619 (27%), Gaps = 126/619 (20%)

Query: 99   KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN---CVLDFEDLIIN 155
            + +++++ + ++     T     +  A+L LA    A Y   K +      +D+ DL+  
Sbjct: 639  QAREARELWRQLSLARETRHTLHAGHAALELAA---ARYTARKAEQPDFRYVDYADLLDW 695

Query: 156  TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              D L   D+   +         H+L+DEVQD S +Q ++IR +      G         
Sbjct: 696  WLDHL--DDLPRDMLP------QHVLVDEVQDLSPVQLDIIRGMLPPDGSG--------- 738

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
             F +GD  Q+IY F G   +     + I            S+  L  SFRS+  +L +  
Sbjct: 739  FFGIGDPDQAIYGFRGVSGQSEASLRSIWP--------GLSVYCLGRSFRSSQAVLNMAH 790

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +         L+   +   + R            W     Q                  
Sbjct: 791  SLLLHKGQCGPLTAAQSLNAQLRLFSAPDQQAELRWISRRVQALLGATG----------- 839

Query: 336  LPQESSASILARRIAYTISNMIGTDTIFSNGK--KRVIQAKDILVLVRKRKDTPLITFLT 393
                                ++      +        +   DI VLVR R   P      
Sbjct: 840  ------------------HTLLDQQQNSAEAHELDGTLAPGDIAVLVRLRAQIPP----L 877

Query: 394  RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
            +       I                               D +   +L           +
Sbjct: 878  KAALEQAGIPCSAPVEEAF-------------------WQDAACARLLALAAVYCGFSGL 918

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             ++       +++    +       + F                  P D  + + G    
Sbjct: 919  AQVFDAATPQQSL---QKDLDTATDNPFAAA----------GPLPPPGDLESWLAGQNWA 965

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             +  ++           E        E     S QE +  L     T    + A H  V+
Sbjct: 966  GEVLLT------GRAWRELKRSWKEQE-----SWQEFLHHLAWLQETEMVRNKAEH--VQ 1012

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV- 632
            IMT+H +KGLE   VFL      +   +                       + + + I  
Sbjct: 1013 IMTMHASKGLEFQAVFLPGLEDGLLPLRRDMLFGPATDTITGAARNTGNSNADTADAIAP 1072

Query: 633  -----------SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT---SNEKKSNQ 678
                           ++     ++E  RLLYV +TRA+  L +   +             
Sbjct: 1073 TVADTARTDAGPAANEYEAPEQEDEERRLLYVALTRAARALFVSHSARRTLYGKSLALPP 1132

Query: 679  RTWYDMVYDSFHNDERVKK 697
              + + +            
Sbjct: 1133 SPFLEQIRHCCRQSVLTPH 1151


>gi|254365820|ref|ZP_04981865.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           str. Haarlem]
 gi|134151333|gb|EBA43378.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           str. Haarlem]
          Length = 722

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 92/691 (13%), Positives = 185/691 (26%), Gaps = 169/691 (24%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +            S +    +L+              L+        +  + 
Sbjct: 90  AAGEMRSRL--RALDAAARTGSGVGAVQALTFHAAAYR------QLRYFWSRVIADTGWQ 141

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL S F        +  +    +    DL  +++ ++   I   +        +      
Sbjct: 142 LLDSKFAVVARAASRTRLHASTDD-VRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLD 200

Query: 128 TL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + + YE  K +   +   D            +  A +  +        ++DE Q
Sbjct: 201 AAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQ 260

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q  V+ +   D             L  VGD  Q+IYSF GA P+ +L   R    
Sbjct: 261 DVTPLQQRVLSAWLGD----------RDDLTVVGDANQTIYSFTGASPRFLLDFSRRFP- 309

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    +++ L   +RST  ++++ ++V +                + R S   + G
Sbjct: 310 -------DAAVVRLERDYRSTPQVVSLANRVIAAARGR-------VAGSKLRLSGQREPG 355

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                          S  + S     A  +A +I+ +I + T     
Sbjct: 356 PVP-------------------------SFHEHSDEPAEAATVAASIARLIASGTP---- 386

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   ++ +L R    + +             I+          +   IK  +   +
Sbjct: 387 ------PSEVAILYRVNAQSEVYEEAL----TQAGIAYQVRGGEGFFNRQEIKQALLALQ 436

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            +  ++ D +   ++++ L                                 ++ +   +
Sbjct: 437 RVSERDTDAALSDVVRAVLAPLGLTA---------------------QPPVGTRARERWE 475

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +  L  +                     +   R   ++  +L E        E      
Sbjct: 476 ALTALAELVD------------------DELAQRPALQLPGLLAELRRRA---EARHPPV 514

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           +Q                       V + ++H AKGLE   VFLV          H    
Sbjct: 515 VQG----------------------VTLASLHAAKGLEWDAVFLVGLADGTLPISH---- 548

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                       L         EE  RLLYVG+TRA   L +  
Sbjct: 549 ---------------------------ALAHGPNSEPVEEERRLLYVGITRARVHLALSW 581

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             + S   + +++    +   +         
Sbjct: 582 ALSRSPGGRQSRKPSRFLNGIAPQTRADPVP 612


>gi|238061857|ref|ZP_04606566.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
 gi|237883668|gb|EEP72496.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
          Length = 1062

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 82/574 (14%), Positives = 149/574 (25%), Gaps = 149/574 (25%)

Query: 135  AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
            A Y    +K  ++D +DL+    +LL        +  +       I +DE QD   +Q+E
Sbjct: 634  AAYAALLRKRDLVDLDDLLTLPVELLCAD---RKLAQRYRDRWQWIFVDEYQDVDAVQYE 690

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            ++R L+           +   L A+GD  Q+IYSF GA+    LR  +            
Sbjct: 691  LLRLLS----------PADGNLCAIGDPDQAIYSFRGADVGYFLRFSQDF--------TD 732

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              ++ L  ++RS A IL    +  +     +G   D                        
Sbjct: 733  ARLVRLNRNYRSAAPILAAAVQAIAPSSLVRGRRLDPARLDP------------------ 774

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                     P    + +   +   +     +   +       + +  I  +G+   +   
Sbjct: 775  -------EAPLVGRYAAASVADEADFVVRTVDDLVGGLSHRSLDSGRI--DGRSTSLSFS 825

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            DI VL R       I            + V       L D   +  +    R        
Sbjct: 826  DIAVLYRTDAQAAPIVDAL----ARANVPVQKRSHDRLRDRPGVAAIARELR-------- 873

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                                           +   ++  A     +F          +  
Sbjct: 874  -----------------------HADGLGGGLPARVRLAAQVVADRFAA------PTLDG 904

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            +    P +    +          ++       D ++ FL+                   L
Sbjct: 905  SGAVRPEEVRAAV--------DLLTPLARRCGDDVELFLSQ------------------L 938

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                             V ++T+H AKGLE PVVFLV     +   +             
Sbjct: 939  ATGAEVDALDP--RAEAVTLLTLHAAKGLEFPVVFLVGCEDGLLPLRWPGSTP------- 989

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                      +    E  RL +VG+TRA D+L +   +  +   
Sbjct: 990  -------------------------DEDAIAEERRLFFVGLTRAQDRLYVSHAARRTRHG 1024

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
                      +                      +
Sbjct: 1025 SERDCRPTPFLDVIDPGLFERLGEAEPRRPKDRQ 1058


>gi|111225382|ref|YP_716176.1| putative ATP-dependent DNA helicase [Frankia alni ACN14a]
 gi|111152914|emb|CAJ64662.1| Putative ATP-dependent DNA helicase [Frankia alni ACN14a]
          Length = 769

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 106/330 (32%), Gaps = 74/330 (22%)

Query: 90  NKKSPDLKEKLKKSQDEFIK-IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
             +  DL  +++ ++   +             + T         L A YEE K++  V+D
Sbjct: 175 RAELRDLTAEVEWAKASLVAPADYARMAAAGGRETATPAPTVARLYAAYEEVKREAGVVD 234

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            EDL++ T  ++++ D   W+  ++     H+++DE QD + +Q  V+ +   D      
Sbjct: 235 MEDLLLLTAAMIEEHD---WVATEVRSRYRHLVVDEYQDVNALQQRVLEAWLGDRDS--- 288

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                  L  VGD  Q+IYSF GA P+ +L   R             +++ L   +RST 
Sbjct: 289 -------LCVVGDPHQTIYSFAGASPRYLLDFPRR--------HPDAAVVRLVRDYRSTP 333

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            ++ + +++       +             ++       V L                  
Sbjct: 334 QVVGLANRLVQAAPGTR-----------LVAAAPDGPPPVWL------------------ 364

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                    +  S +  A  +A  I  +I   T           A  I VL R    +  
Sbjct: 365 ---------ECDSEADEAAAVASRIRTLIARGTP----------ASRIAVLYRINAQSEA 405

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                           +            +
Sbjct: 406 YEAAIGAAGIA----YLVRGGEKFFARTEV 431



 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 47/160 (29%), Gaps = 37/160 (23%)

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
            E  + L             +      L   + +    +   H      V + T+H AKG
Sbjct: 479 REQWENLAALHRLAADLAARAPQ--AGLAEFVAELGDRVTHEHQPTVEGVTLSTLHAAKG 536

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   VFLV          H K                                      
Sbjct: 537 LEWDAVFLVGLTDGTLPLVHAKT-----------------------------------AE 561

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
              E  RLLYVG+TRA   L++      ++ ++S + + +
Sbjct: 562 QIAEERRLLYVGVTRARTHLVLSWALARADGRRSRRPSRF 601


>gi|325959294|ref|YP_004290760.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
 gi|325330726|gb|ADZ09788.1| UvrD/REP helicase [Methanobacterium sp. AL-21]
          Length = 786

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 90/564 (15%), Positives = 178/564 (31%), Gaps = 63/564 (11%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + +A  +   Y     +  + DF  +  +  D L+   + ++++      I  +L+DE Q
Sbjct: 221 VKVAYAVINDYLTELDEKLLYDFSLIEADFLDKLRDNKLESFLKD-----IKLVLVDEYQ 275

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+L+Q ++       F +GK    +   L  VGD+ QS+Y F GA        K     
Sbjct: 276 DTNLLQEQIY------FEIGKAALKNGGNLTVVGDDDQSLYRFRGATVDLFTNFKTRI-- 327

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +I L  ++RST +I+   ++ FS+ + A                   Q  
Sbjct: 328 -FKELKIDPELIYLSKNYRSTCNIVDFCNE-FSVLDGAF------------------QPA 367

Query: 307 TVQLWEQVVSQHDSQCN-PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
            V+    +     +    P    + S  ++L ++ +  +                     
Sbjct: 368 RVKGKPPIEPARKASTEFPVLGMFRSDVETLSKDLTKFVKEIIHGDGFKFEHCGKEYVIK 427

Query: 366 GKKRVIQAKDILVLVRKRKDTPLI-----TFLTRFLKNDYKIS--VVGNDRFILTDHLAI 418
                    DI VL+    +             R    +      V       L      
Sbjct: 428 VDPMEGSPTDIAVLMSSPLEINSFKKKRLAHYLREDLENANHPLSVFNPRGQNLERTWEA 487

Query: 419 KDLMALGRFILSQEDDL--SFVCMLKSPLFNF-----SEDDIFKICTQRHETETVYE--- 468
             L  L    +     +  S   + K+    F     +  +  +      +   + +   
Sbjct: 488 SVLCGLLLKCVDPCSTIQASIEKLPKTAQRRFESWRKTATEYIETDPAPKDHLGLKDFVT 547

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
             Q     G  K+   +  +     +  +          L   +   + IS+ G      
Sbjct: 548 AWQNRQPLGKKKWSKDVALLDLAYKLVTWIPSMQNDVEGLVYLEAVTRTISQIGIFSSFG 607

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN------HNEVRIMTVHTAKG 582
            +   +   +     Y+S++E    +     T       +       N + IM++H +KG
Sbjct: 608 GNIVFD--KKFHDLEYNSIKEAYWNIFVPIATGAIEVEESLLDTLPDNRINIMSIHQSKG 665

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE P+V + D GS      H       P+          + +  S  +I     +  K  
Sbjct: 666 LEFPLVIV-DVGSDFKMDHHKNAFKRFPNEGGKTCDLEDLIRKCSPLDIPD---RSGKDR 721

Query: 643 TQEEYNRLLYVGMTRASDQLIICK 666
             ++  R  +V  +RA D L++  
Sbjct: 722 AFDDLIRHYFVAFSRAQDVLLLIG 745


>gi|326517054|dbj|BAJ96519.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 774

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/378 (18%), Positives = 117/378 (30%), Gaps = 70/378 (18%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
                  K     + + Q         K+K KK      + +    T + ++        
Sbjct: 425 ERLLEHGKSDGLGDAVKQCDGDIKNSFKDKAKKWLKFVTQAKSSGQTPEEYEKKGDL--T 482

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +  HY E       LD+ D I ++  LL K      +  +       I++DE QDTS
Sbjct: 483 GASILRHYNEILVSCNALDYHDFINSSITLLTKFPE---VYKECQTTCQAIVVDEFQDTS 539

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+ +++ L                +  VGDE QSI+SF+GA+       +R       
Sbjct: 540 AMQYFLLKLLAS-----------HNHITIVGDEDQSIFSFNGADVSGFDSFRRDFPNH-- 586

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I L  ++RST  I+     +     N             H+          +
Sbjct: 587 ------KEIRLNKNYRSTRAIVEAATALIRNNTNR----------CHHKLVETDNPSGSK 630

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +  +     DS                           + A+ I  +I T +  + G+  
Sbjct: 631 ITVKECHSEDS---------------------------QCAFVIDKIIETTSSSAEGR-- 661

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 I VL R++          R  K  + +               IK +MA+ R  L
Sbjct: 662 --DFGKIAVLYRRQITGKAFQVSFRNRKIPFNVH-----GVAFYRKKVIKAIMAILRTTL 714

Query: 430 SQEDDLSFVCMLKSPLFN 447
              DD  +   LK  L  
Sbjct: 715 PGCDDGPWRQALKILLPG 732


>gi|88856791|ref|ZP_01131445.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
 gi|88813959|gb|EAR23827.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1]
          Length = 563

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 87/652 (13%), Positives = 178/652 (27%), Gaps = 183/652 (28%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
                      ++  T + + L +       +    +       +        + +  + 
Sbjct: 73  RTRLRTLGAEGVAARTFHASALSQLNAFWPQTIGGTMPRLLEGKARMIAHAADSLKLKVD 132

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA---HYEEAKK 142
           T  +          +    +     R     Y   + T  +      +      YE  K 
Sbjct: 133 TATLRD--------VAAEIEWRKTSRMSIEQYGNAERTQPAALTVDRMVELHTAYEATKD 184

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               +DFED+++    +++       I  ++ ++    ++DE QD S +Q E++R    D
Sbjct: 185 ARRQIDFEDVLLAAAGMIESEP---RIAQQVREQYRFFVVDEYQDVSPLQHELLRLWVGD 241

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        L  VGD  Q+IYSF GA P            R  +      ++ L  
Sbjct: 242 ----------RDDLCVVGDVSQTIYSFAGASP--------DFLLRFASHHDNAVVLRLER 283

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RST +I+   +K+ +                        Q G + L         +  
Sbjct: 284 NYRSTPEIVHTANKLMAN-----------------------QPGALTLRSATSEHSATPA 320

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
               +   +   ++ +  +  I A      I                        VL R 
Sbjct: 321 VTGFDDDQAEAAAVAEAVAGQIAAGASPEEI-----------------------AVLYRI 357

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +  I            +  +        D   +K+ + L R         + +    
Sbjct: 358 NAQSQAIEAALTA----AGVPFLVRGATRFFDQREVKEAIMLLR--------GASITTAV 405

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            PLF    D +  I   +   E+                +   + ++ ++ +A+      
Sbjct: 406 EPLFKSVSDVLRSIGWSQEPPES------------AGAVRDRWESLNVIMRLAE------ 447

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
                                     L EF+   +  + ++   L+              
Sbjct: 448 -------------------DAAAEMTLREFVADLVDRQSSNNEPLRS------------- 475

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                    V + T+H+AKGLE   V ++     +    + +                  
Sbjct: 476 --------AVNLATLHSAKGLEWDCVHIIGLNEGLLPISYARTP---------------- 511

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                 +E  RLLYVG+TRA   L +   ++    +
Sbjct: 512 -------------------EAIDEERRLLYVGITRARRSLGMSWSASAQTGR 544


>gi|315655631|ref|ZP_07908529.1| exopolyphosphatase [Mobiluncus curtisii ATCC 51333]
 gi|315489695|gb|EFU79322.1| exopolyphosphatase [Mobiluncus curtisii ATCC 51333]
          Length = 519

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 119/335 (35%), Gaps = 62/335 (18%)

Query: 69  LSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L +  +T        N+   ++   + +++       D            +   + L++ 
Sbjct: 126 LKATLVTAAGVRLGLNLGKAQVRALAGEIEWAKVSLVDPSHYALAARAAGREAVADLSTE 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A+ L   YE+AK    +LDFED+++    ++   D    +   I  +  + ++DE QD
Sbjct: 186 RVAE-LLDAYEDAKIAAEMLDFEDILLLCAGMM---DEREDVARTIRNQYRYFVVDEYQD 241

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            S +Q  ++ S               R L  VGD  Q+IYSF GA P+ +    +   + 
Sbjct: 242 VSPLQNYLLMSWLG----------RRRDLAVVGDAAQTIYSFAGATPEYLTEFTQTYPE- 290

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++EL   +RST  I+ + ++V +  +   G                   GT
Sbjct: 291 -------AKVVELIRDYRSTPQIVNLANQVLAQAKGTDGRPL---------------GGT 328

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V+L  Q       +  P+   + +  D           A+ IA  I +++          
Sbjct: 329 VRLVSQR------ETGPEVSWFVAPDDETE--------AKEIARRIQDLLAEG------- 367

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              +    I VL R      L        +  + I
Sbjct: 368 ---LSPSQIAVLFRTNAQAALFAVALGAKRIPFVI 399



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 35/133 (26%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  V + ++H+AKGLE  VVFL      +                           
Sbjct: 418 EDDEPGGVTLASLHSAKGLEWQVVFLAGVSEGLLP------------------------- 452

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                     +      +T EE  RL YVG+TRA  +LI+       +     +     +
Sbjct: 453 ----------ISLAQTATTIEEERRLCYVGVTRARSRLIVSFAKARRDGSSQEREACRFL 502

Query: 685 VYDSFHNDERVKK 697
                H    +++
Sbjct: 503 APFWPHRSATLRR 515


>gi|308125359|ref|ZP_07663372.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308113235|gb|EFO50775.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 738

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/556 (13%), Positives = 158/556 (28%), Gaps = 93/556 (16%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSM------ETGNPTILKKAQTLQQASQTQC 61
           +  E  E +                    L +      E G     +  +  +     + 
Sbjct: 252 AAGEMAERLASKNKEAVASMWIGTFHAFGLDLVRRFYSELGFEKEPRLLERTEAVEALED 311

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSP--DLKEKLKKSQDEFIKIRDRFNTYKM 119
              R  L     L        N+++     K    D ++  + +Q+         +    
Sbjct: 312 EFPRLGLEHFRNLYDPTEHITNLLSAISRAKDEVVDHRDYFRLAQEMLDSADTEESKTAA 371

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            K+          +   YE  K+    +DF DL++     L+       +        +H
Sbjct: 372 LKAKE-----VATVYEAYERLKRAKGCIDFGDLVLLPVKFLENN---VELFKHFQSLYDH 423

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QD +     ++  L  +             L+AVGD +QSIY F GA    + R
Sbjct: 424 VLVDEYQDVNRSSIRLLMLLCGE----------GENLWAVGDARQSIYRFRGASSVSMSR 473

Query: 240 EK-RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +                 L +++RS+ +I+                        +  
Sbjct: 474 YCTQDFPTALQG--------RLKINYRSSEEIIRA--------------------YSKFA 505

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                 +G+ +L   +  + ++ C P+ +      D           A  +A TI +M  
Sbjct: 506 FDMSANIGSPEL---IADRGETGCLPEFKVVEKADDQ----------AVVLAETIKDMQE 552

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
           +              +D  VL    +    +      L     + V+      L +   +
Sbjct: 553 SG----------YSYRDQAVLCSGNERLSQLAEQLELL----GVPVLYLG--SLFEREEV 596

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           KD+ +    +         V + + P F  S +D+  I           +     +    
Sbjct: 597 KDMFSFLSLLTD-SWGSGLVRIGRWPEFELSLEDLDVILNHLRTERCEDKGWLLDSQDIT 655

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRF-------GNEVIDVLD 530
                  + + +L    +     D    +L      + +  +R               + 
Sbjct: 656 GISSSGKEALSKLGWTFEGIDKTDHPWKVLATLIFDKTRIAARLSSSEVVSDKNRSIAIW 715

Query: 531 EFLNFTLRNEQNSYSS 546
           + +NF         +S
Sbjct: 716 QLMNFVRTAISAETAS 731


>gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens B str. ATCC 3626]
          Length = 870

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 124/367 (33%), Gaps = 74/367 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   +++  LDF DLII T +L K       +   +  +  +I IDEVQDTS+I
Sbjct: 201 ELVTLYDSKLREDHALDFNDLIILTKELFKDE----KVVRALKNKFKYINIDEVQDTSII 256

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           ++ +I  L E              +   GD  Q+IYS+ G++P+ +  +    +++    
Sbjct: 257 EYSIIEKLFE-----------GNNVLICGDFFQTIYSWRGSDPEMIFNK---FKEKYNPV 302

Query: 252 GQKFSIIELPLSFRSTADI----LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 I    ++R+T ++    L  ++  FS                            
Sbjct: 303 E-----IVFSKNYRATKNLNKASLEFLNNAFS--------------------------SK 331

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V    +     +S+ + ++           +       AR I   ++ +           
Sbjct: 332 VSTMYKDGILAESKEDGEKILLK-------ETRGLREEARFIFDYVNKLCEKGEDL---- 380

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK--ISVVGNDRFILTDHLAIKDLMALG 425
                 K + VL R       ++     +          +  D+F       +KD++A  
Sbjct: 381 ------KRVCVLTRDNNYNIGLSEDLYQIGGYEGADFEFILVDQFKFFRRQEVKDILAFL 434

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQH 483
           + I ++ D LS   ++           +  I     +     + +YI         KF  
Sbjct: 435 KLIANRYDSLSLKRIVNRLPTGIGMRTLEAIESYKYKEVGIRLADYIDPLVLEYGEKFSI 494

Query: 484 VIKYIHE 490
           +I    +
Sbjct: 495 LINEFEK 501



 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 40/200 (20%)

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
               +  +  F  + K ++EL  IA+   P++    ++     +  +      E ++ L 
Sbjct: 678 MALMSKHLKAFTAISKKLNELFQIAESKRPYELVVCVMNGFNIKSMYAGDENKEKLNRLR 737

Query: 531 EFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           +        +  S  +   L+       L          +      + I+TVH AKGLE 
Sbjct: 738 DLYALFRDLDDKSKGNRDALLDIIRITGLSNGELESLIINRTKKPRIPIITVHQAKGLEF 797

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VFL    +  F                                        +K+    
Sbjct: 798 DTVFLAGIQNNTFPS-----------------------------------YMSIKEGNLA 822

Query: 646 EYNRLLYVGMTRASDQLIIC 665
           E  R+ YV +TRA  +L+I 
Sbjct: 823 EEKRVFYVAITRAKKRLVIT 842


>gi|253800233|ref|YP_003033234.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233809|ref|ZP_04927134.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis C]
 gi|124599338|gb|EAY58442.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis C]
 gi|253321736|gb|ACT26339.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis KZN
           1435]
          Length = 729

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 92/691 (13%), Positives = 185/691 (26%), Gaps = 169/691 (24%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +            S +    +L+              L+        +  + 
Sbjct: 97  AAGEMRSRL--RALDAAARTGSGVGAVQALTFHAAAYR------QLRYFWSRVIADTGWQ 148

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL S F        +  +    +    DL  +++ ++   I   +        +      
Sbjct: 149 LLDSKFAVVARAASRTRLHASTDD-VRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLD 207

Query: 128 TL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + + YE  K +   +   D            +  A +  +        ++DE Q
Sbjct: 208 AAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQ 267

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q  V+ +   D             L  VGD  Q+IYSF GA P+ +L   R    
Sbjct: 268 DVTPLQQRVLSAWLGD----------RDDLTVVGDANQTIYSFTGASPRFLLDFSRRFP- 316

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    +++ L   +RST  ++++ ++V +                + R S   + G
Sbjct: 317 -------DAAVVRLERDYRSTPQVVSLANRVIAAARGR-------VAGSKLRLSGQREPG 362

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                          S  + S     A  +A +I+ +I + T     
Sbjct: 363 PVP-------------------------SFHEHSDEPAEAATVAASIARLIASGTP---- 393

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   ++ +L R    + +             I+          +   IK  +   +
Sbjct: 394 ------PSEVAILYRVNAQSEVYEEAL----TQAGIAYQVRGGEGFFNRQEIKQALLALQ 443

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            +  ++ D +   ++++ L                                 ++ +   +
Sbjct: 444 RVSERDTDAALSDVVRAVLAPLGLTA---------------------QPPVGTRARERWE 482

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +  L  +                     +   R   ++  +L E        E      
Sbjct: 483 ALTALAELVD------------------DELAQRPALQLPGLLAELRRRA---EARHPPV 521

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           +Q                       V + ++H AKGLE   VFLV          H    
Sbjct: 522 VQG----------------------VTLASLHAAKGLEWDAVFLVGLADGTLPISH---- 555

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                       L         EE  RLLYVG+TRA   L +  
Sbjct: 556 ---------------------------ALAHGPNSEPVEEERRLLYVGITRARVHLALSW 588

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             + S   + +++    +   +         
Sbjct: 589 ALSRSPGGRQSRKPSRFLNGIAPQTRADPVP 619


>gi|258406520|ref|YP_003199262.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
 gi|257798747|gb|ACV69684.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692]
          Length = 1027

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 84/539 (15%), Positives = 143/539 (26%), Gaps = 162/539 (30%)

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           A Y+EAK +  V+DF DL+      L       W +         +LIDE+QD + +Q  
Sbjct: 608 AEYQEAKARRGVVDFTDLLQKWLQGLTNGARPEWTQ---------VLIDEIQDLTGLQLN 658

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++++L                 F +GD  QSIY F GA         R   +        
Sbjct: 659 LVQALC---------PPQGHGFFGIGDPDQSIYGFRGAVSTTAEWLSRTWPELTP----- 704

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              + L  ++R+ A ++     VF                               L  Q 
Sbjct: 705 ---LSLQRNYRAAAPLVQAAGTVF--------------------------PERPPLRPQR 735

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG--TDTIFSNGKKRVIQ 372
             Q          +W                A  IA     +IG    +   +G      
Sbjct: 736 SVQGQIIVCETPSAW--------------REASWIATQARTLIGATAHSQADSGDTGETS 781

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             DI VLVR R     +        +   +     +         ++DL+   R      
Sbjct: 782 PGDIAVLVRTRALLRPLAEKL----DQAGVPCSVPEEEPFWRDNRVQDLLETVRA----- 832

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
              +F   +  P                      ++  +     G +           + 
Sbjct: 833 ---AFDRAVTPP----------------------WDCPEAVLGQGPAGMAAYWAQSGPVD 867

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            +                +   +  ++    +                     +L  +  
Sbjct: 868 PLFWQSRAFQQLQQAFADQGDWEALLTWLARQ--------------------DTLDTVRH 907

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            +E               +VR+MT+H +KGLE   VFL      +  +            
Sbjct: 908 RVE---------------KVRLMTLHASKGLEFTAVFLPALEEGLLPYGAG--------- 943

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                           +   ++    L      E  RL YVG+TRA   L +       
Sbjct: 944 ----------------DFGSNEENTALTADRLAEEKRLFYVGLTRAKRYLYLSHSQERR 986


>gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
 gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens NCTC 8239]
          Length = 870

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 124/367 (33%), Gaps = 74/367 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   +++  LDF DLII T +L K       +   +  +  +I IDEVQDTS+I
Sbjct: 201 ELVTLYDSKLREDHALDFNDLIILTKELFKDE----KVVRALKNKFKYINIDEVQDTSII 256

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           ++ +I  + E              +   GD  Q+IYS+ G++P+ +  +    +++    
Sbjct: 257 EYSIIEKIFE-----------GNNVLICGDFFQTIYSWRGSDPEMIFNK---FKEKYNPV 302

Query: 252 GQKFSIIELPLSFRSTADI----LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 I    ++R+T ++    L  ++  FS                            
Sbjct: 303 E-----IVFSKNYRATKNLNKASLEFLNNAFS--------------------------SK 331

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V    +     +S+ + ++           +       AR I   ++ +           
Sbjct: 332 VSTMYKDGILAESKEDGEKILLK-------ETRGLREEARFIFDYVNKLCENGEDL---- 380

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK--ISVVGNDRFILTDHLAIKDLMALG 425
                 K + VL R       ++     +          +  D+F       +KD++A  
Sbjct: 381 ------KRVCVLTRDNNYNIGLSEELYQIGGYEGADFEFILVDQFKFFRRQEVKDILAFL 434

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQH 483
           + I ++ D LS   ++           +  I     +     + +YI         KF  
Sbjct: 435 KLIANRYDSLSLKRIVNRLPTGIGMRTLEAIESYKYKEVGIRLADYIDPLVLEYGEKFSL 494

Query: 484 VIKYIHE 490
           +I    +
Sbjct: 495 LINEFEK 501



 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 78/263 (29%), Gaps = 42/263 (15%)

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
           D   +       ++      + +  D               + + + +   ++    ++ 
Sbjct: 617 DTLDIYRRFYPGNINYKLENLSNVYDTKHKPSHDAMDDIIATGELLVRAINEKIRETSME 676

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
                  +  +  F  + K ++EL  I++   P++    ++     +  +      E ++
Sbjct: 677 --RMALMSKHLKAFTAISKKLNELFKISESKRPYELVACVMNGFNIKSMYAGDENKEKLN 734

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
            L +        +  S  +   L+       L          +      + I+TVH AKG
Sbjct: 735 RLRDLYALFRDLDDKSKGNRDALLDIIRITGLSNGELESLIINRTKKPRIPIITVHQAKG 794

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   VFL    +  F                                        +K+ 
Sbjct: 795 LEFDTVFLAGIQNNTFPS-----------------------------------YMSIKEG 819

Query: 643 TQEEYNRLLYVGMTRASDQLIIC 665
              E  R+ YV +TRA  +L+I 
Sbjct: 820 NLSEEKRVFYVAITRAKKRLVIT 842


>gi|158312779|ref|YP_001505287.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108184|gb|ABW10381.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 1135

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/513 (13%), Positives = 153/513 (29%), Gaps = 65/513 (12%)

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                     +     + E V   +       + +   +++ +     + +  +P D    
Sbjct: 509  GLPASSAELLREAVADPERVLLAVPDELAAPVRRLGRLLRTVRA--ELRRGAAPEDALWT 566

Query: 507  ILGAKKGRQQFIS---------RFGNEVIDVLDEFLNFTLRNEQNSYSSL--QELISEL- 554
            +  A +   +            R  +  +D +    +   R  +          ++ EL 
Sbjct: 567  LWTASEWGPRLERASAVGGPAGRSADRDLDAVVALFDAVGRLGERRGPGFGVSSVVEELT 626

Query: 555  -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
             +Q  P   +A +     VR++T H +KGLE  VV +      V+     +   +     
Sbjct: 627  RQQIAPETAQARAGRPATVRLLTAHRSKGLEWEVVVVCGVQDGVWPDLRQRHTLLGAEQL 686

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            D P      P                ++    +  RL YV +TRA  +L++       ++
Sbjct: 687  DSPRNGGVRPPRT-------------REELLADERRLFYVALTRARRRLVVTAVDGADDD 733

Query: 674  KKSNQRTWYDMVYDSFHNDERVKK----------IKLTNSINKDEWIAYEWSTHHPENTP 723
             +   R   ++         R  +          ++      +      E +        
Sbjct: 734  GEQPSRFLAELGVQVESVRARPPRPLTLVGLVAALRRLTVDPEASAAMREAAGVRLAALA 793

Query: 724  LEREETIKQLMDEQKIPKKL-------FSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
               +ET + L+      +                 + P  L+ S++       L   L  
Sbjct: 794  AASDETGRALVPAAHPDRWWGLLDVTSSDVPVVAPDAPIRLSGSSLSGLSSCGLRWFLEH 853

Query: 777  NQ--------TFNRGLIIHKLLQVIFTLPEHKRKNFIT-------SYCTKNAKLWPAKEY 821
                          G ++H L   + T     R   +         +   +++    +E 
Sbjct: 854  EANAAEPASPAQGFGKVVHALADEVTTGRTEARLEALDARLDLVWRHLEFDSRWRSEQER 913

Query: 822  KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFI 880
                 ++ R LE             SEV  S  I    + + + G ID++ +     + +
Sbjct: 914  AAAREALGRFLEWHA-AQRGREVVASEVRFSCDIEVAGRVVRLRGFIDRVELDDAGRVHV 972

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             ++KT    P   +       AQL  Y+  +++
Sbjct: 973  VDFKTGRTPPSRRDLAT---HAQLGSYQLAVRE 1002



 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 96/311 (30%), Gaps = 36/311 (11%)

Query: 1   LKNRFGLSLNESYELIYKD---LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS 57
           L+ RF + L  +           W L   +       +        P    + + L + S
Sbjct: 61  LRERFAVRLGAAAVGPAAWTFHAWCLGLLRAYGAATPLGGFRLLSGPEQDARLRDLIEGS 120

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
           +          L+    T+ F              + +++  L ++++  I +       
Sbjct: 121 RELGRPVWPDPLAGCLNTRGF--------------AEEIRMLLTRARE--IGVDPPALAR 164

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              +   +         + Y +A      LD+ DL+    +L  + D    +  ++ Q  
Sbjct: 165 IARRVGRSDWAAVAEFYSDYLDALGAEGALDYADLVHAAANLAAEPD----VLAQLRQRY 220

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             + +DE QDT   Q  ++ ++                L   GD  QSIY+F GAE + +
Sbjct: 221 RAVFVDEYQDTDPAQERLLTAVAG----------GGGDLVVFGDPDQSIYAFRGAEVRGL 270

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L       +     G    +  L    R     L    +V +   +A             
Sbjct: 271 LDFPNRFPR---ADGSPAPVAALRRCRRMAPAPLAASRRVAASLPSAGLPVRHVRAHRDL 327

Query: 298 RSSRIGQVGTV 308
            S+     G V
Sbjct: 328 VSAGAVGPGQV 338


>gi|260188240|ref|ZP_05765714.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289448880|ref|ZP_06438624.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           CPHL_A]
 gi|289421838|gb|EFD19039.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           CPHL_A]
          Length = 700

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 92/691 (13%), Positives = 184/691 (26%), Gaps = 169/691 (24%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +            S +    +L+              L+        +  + 
Sbjct: 68  AAGEMRSRL--RALDAAARTGSGVGAVQALTFHAAAYR------QLRYFWSRVIADTGWQ 119

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL S F        +  +    +    DL  +++ ++   I   +        +      
Sbjct: 120 LLDSKFAVVARAASRTRLHASTDD-VRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLD 178

Query: 128 TL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + + YE  K +   +   D            +  A +  +        ++DE Q
Sbjct: 179 AAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQ 238

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q  V+ +   D             L  VGD  Q+IYSF GA P+ +L   R    
Sbjct: 239 DVTPLQQRVLSAWLGD----------RDDLTVVGDANQTIYSFTGASPRFLLDFSRRFP- 287

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    +++ L   +RST  ++++ ++V +                + R S   + G
Sbjct: 288 -------DAAVVRLERDYRSTPQVVSLANRVIAAARGR-------VAGSKLRLSGQREPG 333

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                          S  + S     A  +A +I+ +I + T     
Sbjct: 334 PVP-------------------------SFHEHSDEPAEAATVAASIARLIASGTP---- 364

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   ++ +L R    + +             I+          +   IK  +   +
Sbjct: 365 ------PSEVAILYRVNAQSEVYEEAL----TQAGIAYQVRGGEGFFNRQEIKQALLALQ 414

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            +   + D +   ++++ L                                 ++ +   +
Sbjct: 415 RVSEHDTDAALSDVVRAVLAPLGLTA---------------------QPPVGTRARERWE 453

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +  L  +                     +   R   ++  +L E        E      
Sbjct: 454 ALTALAELVD------------------DELAQRPALQLPGLLAELRRRA---EARHPPV 492

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           +Q                       V + ++H AKGLE   VFLV          H    
Sbjct: 493 VQG----------------------VTLASLHAAKGLEWDAVFLVGLADGTLPISH---- 526

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                       L         EE  RLLYVG+TRA   L +  
Sbjct: 527 ---------------------------ALAHGPNSEPVEEERRLLYVGITRARVHLALSW 559

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             + S   + +++    +   +         
Sbjct: 560 ALSRSPGGRQSRKPSRFLNGIAPQTRADPVP 590


>gi|302558546|ref|ZP_07310888.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302476164|gb|EFL39257.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 536

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/381 (13%), Positives = 117/381 (30%), Gaps = 34/381 (8%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   +      Q +  + +    +     + L   + L+  S  +       
Sbjct: 122 AAVELRDRMALRIGAAHAPQATTFHSFCYALIRAHQDSDL-FVEPLRLLSGPEQDVTVRE 180

Query: 68  LLSS---------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+            +      +  + T+    +   +      ++   + +        
Sbjct: 181 LLAGQVDLERLGLAHVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLGPGALDAF 235

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +        A    A Y +      VLD+ +L+     L ++ +++     ++    +
Sbjct: 236 ARRIGRPDWRAASAFLAEYLDVLDLQGVLDYAELVHRAVLLARRPEIAG----QLAARYD 291

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + +DE QDT   Q  ++ +L              RTL A GD  QSIY+F GA+   +L
Sbjct: 292 AVYVDEYQDTDPAQVRLLHALAG-----------GRTLVAFGDPDQSIYAFRGADVGGIL 340

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                  +     G+   +  L  S RS A +L    +V       +  +E         
Sbjct: 341 EFPHAFPR---ADGRPAPVEVLRTSRRSGAALLEATRRVTRRMPLPRLPAEKVRAHRELT 397

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL-ARRIAYTISNMI 357
             R G    V  +    ++ D+  +  + +         + +      AR +      + 
Sbjct: 398 PHRDGGRAEVYTYPTSGTELDNIADILRRAHLEDGVPWNEMAVLVRAGARTLPTVRRALT 457

Query: 358 GTDTIFSNGKKRVIQAKDILV 378
                       +    +  V
Sbjct: 458 SAGVPVDVDGDDLPLRHEPAV 478


>gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
 gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens ATCC 13124]
          Length = 870

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 124/367 (33%), Gaps = 74/367 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   +++  LDF DLII T +L K       +   +  +  +I IDEVQDTS+I
Sbjct: 201 ELVTLYDSKLREDHALDFNDLIILTKELFKDE----KVVRALKNKFKYINIDEVQDTSII 256

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           ++ +I  + E              +   GD  Q+IYS+ G++P+ +  +    +++    
Sbjct: 257 EYSIIEKIFE-----------GNNVLICGDFFQTIYSWRGSDPEIIFNK---FKEKYNPV 302

Query: 252 GQKFSIIELPLSFRSTADI----LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 I    ++R+T ++    L  ++  FS                            
Sbjct: 303 E-----IVFSKNYRATKNLNKASLEFLNNAFS--------------------------SK 331

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V    +     +S+ + ++           +       AR I   ++ +           
Sbjct: 332 VSTMYKDGILAESKEDGEKILLK-------ETRGLREEARFIFDYVNKLCEKGEDL---- 380

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK--ISVVGNDRFILTDHLAIKDLMALG 425
                 K + VL R       ++     +          +  D+F       +KD++A  
Sbjct: 381 ------KRVCVLTRDNNYNIGLSEELYQIGGYEGSDFEFILVDQFKFFRRQEVKDILAFL 434

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQH 483
           + I ++ D LS   ++           +  I     +     + +YI         KF  
Sbjct: 435 KLIANRYDSLSLKRIVNRLPTGIGMRTLETIESYKYKEVGIRLADYIDPLVLKYGEKFSL 494

Query: 484 VIKYIHE 490
           +I    +
Sbjct: 495 LINEFEK 501



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 40/215 (18%)

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           +     +            +  +  F  + K ++EL  IA+   P++    ++     + 
Sbjct: 663 VRAINKKIIPTSMERMALMSKHLKAFTAISKKLNELFQIAESKRPYELVACVMNGFNIKS 722

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHN 570
            +      E ++ L +        +  S  +   L+       L          +     
Sbjct: 723 MYAGDENKEKLNRLRDLYALFRDLDDKSKGNRDALLDIIRITGLSNGELESLIINRTKKP 782

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + I+TVH AKGLE   VFL    +  F                                
Sbjct: 783 RIPIITVHQAKGLEFDTVFLAGIQNNTFPS------------------------------ 812

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                   +K+    E  R+ YV +TRA  +L+I 
Sbjct: 813 -----YMSIKEGNLSEEKRVFYVAITRAKKRLVIT 842


>gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101]
 gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101]
          Length = 870

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 74/449 (16%), Positives = 139/449 (30%), Gaps = 108/449 (24%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   +++  LDF DLII T +L K       +   +  +  +I IDEVQDTS+I
Sbjct: 201 ELVTLYDSKLREDHALDFNDLIILTKELFKDE----KVVRALKNKFKYINIDEVQDTSII 256

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           ++ +I  L E              +   GD  Q+IYS+ G++P+ +  +    +++    
Sbjct: 257 EYSIIEKLFE-----------GNNVLICGDFFQTIYSWRGSDPEMIFNK---FKEKYNPV 302

Query: 252 GQKFSIIELPLSFRSTADI----LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 I    ++R+T ++    L  ++  FS                            
Sbjct: 303 E-----IVFSKNYRATQNLNKASLEFLNNAFS--------------------------SK 331

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V    +     +S+   ++           +       AR I    + +           
Sbjct: 332 VSTMYKDGILAESKEKGEKILLKETRGGREE-------ARFIFDYANKLCEKGEDL---- 380

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK--ISVVGNDRFILTDHLAIKDLMALG 425
                 K + VL R       ++     +          +  D+F       +KD++A  
Sbjct: 381 ------KRVCVLTRDNNYNIGLSEELYQIGGYEGADFEFILVDQFKFFRRQEVKDILAFL 434

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQH 483
           + I ++ D LS   ++           +  I     +     + +YI         KF  
Sbjct: 435 KLIANRYDSLSLKRIVNRLPTGIGMRTLEAIESYKYKEVGIRLADYIDPLVLEYGEKFSL 494

Query: 484 VIKYIH------------------------ELIHIAQFCSPHDFFTLILGA--------- 510
           +I                              I + +     D F   L           
Sbjct: 495 LINEFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFLKNKKSVKDSYY 554

Query: 511 -KKGRQQFISRFGNEVIDVLDEFLNFTLR 538
                 + + R G E   VL EF+ ++  
Sbjct: 555 VHGFSDEMLQRIGEEKEKVLKEFVEYSKD 583



 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 40/200 (20%)

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
               +  +  F  + K ++EL  IA+   P++    ++     +  +      E ++ L 
Sbjct: 678 MALMSKHLKAFTAISKKLNELFQIAERKRPYELVACVINGFNIKSMYAGDENKEKLNRLR 737

Query: 531 EFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           +        +  S  +   L+       L          +      + I+TVH AKGLE 
Sbjct: 738 DLYALFRDLDDKSKGNRDALLDIIRITGLSNGELESLIINRTKKPRIPIITVHQAKGLEF 797

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VFL    +  F                                        +K+    
Sbjct: 798 DTVFLAGIQNNTFPS-----------------------------------YMAIKEGNLA 822

Query: 646 EYNRLLYVGMTRASDQLIIC 665
           E  R+ YV +TRA  +L+I 
Sbjct: 823 EEKRVFYVAITRAKKRLVIT 842


>gi|158312789|ref|YP_001505297.1| UvrD/REP helicase [Frankia sp. EAN1pec]
 gi|158108194|gb|ABW10391.1| UvrD/REP helicase [Frankia sp. EAN1pec]
          Length = 759

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/388 (15%), Positives = 122/388 (31%), Gaps = 44/388 (11%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A                  L    +            +    +  DL  +++ 
Sbjct: 107 ARTFHAAALRQLSYFWPSVAGTALPRLEKSRIPLMAKAANRARLRPDRAELRDLTSEVEW 166

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASL-TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
           ++   +   D            +    +   L   YEE K +  VLDF+DL++ T  +++
Sbjct: 167 AKATMVAPADYVRLAAAHGRETSFAPDVVARLYEAYEEVKSEAGVLDFDDLLLLTAAVVE 226

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           +     W+  ++     H ++DE QD + +Q  V+ +   D             L  VGD
Sbjct: 227 EHG---WVATELRARYRHFVVDEYQDVNPLQQRVLDAWLGDRDS----------LCVVGD 273

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q+IYSF GA  + ++   R             +++ L   +RST  ++ + +++    
Sbjct: 274 ANQTIYSFTGASARHLVEFPRRFPA--------ATVVRLVRDYRSTPQVVALANRLLDGA 325

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                      + ++      G  G  +           + +  +  W        +  S
Sbjct: 326 -ARPAPDTRGASAVQAGPGVPGVPGGAEGRSAAGRLVAMRPSGPEPVWL-------ESDS 377

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               A  +A  I  ++GT           + A +I VL R    +              +
Sbjct: 378 EPEEAAAVARRIRGLLGTG----------VPASEIAVLYRINAQSEAYETAL----GRAE 423

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFIL 429
           I  +        +   +   + + R  L
Sbjct: 424 IPYLVRGGEKFFERPEVTGAVRMLRAAL 451



 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 58/242 (23%), Gaps = 43/242 (17%)

Query: 478 ISKFQHVIKYIHELIHIAQFCSP---HDFFTLILGAKKGRQQFISRF---GNEVIDVLDE 531
             +    ++ +   +  A+   P    D    +L A   R            E  + L  
Sbjct: 437 RPEVTGAVRMLRAALRSAETDRPGGLADVVADVLSALGWRPGAPPAGPGADRERWENLAA 496

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                   E     +     +            H+     V + ++H AKGLE   VFLV
Sbjct: 497 LHRLAADLEAREPEADLAAFA--ADLAERAAHQHTPTVQGVTLASLHAAKGLEWDAVFLV 554

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                                                      ++         E  RLL
Sbjct: 555 GLVDGTLP-----------------------------------IVHAQTDEQLAEERRLL 579

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YVG+TRA   L +      +   + ++R    +           +        +      
Sbjct: 580 YVGVTRARVHLTLSWALARAEGARRSRRPSRFLDEPRRAAAAFRRGSSAARPGSARAEPG 639

Query: 712 YE 713
             
Sbjct: 640 TA 641


>gi|38233328|ref|NP_939095.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199588|emb|CAE49244.1| Putative ATP-dependent DNA helicase [Corynebacterium diphtheriae]
          Length = 1060

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/639 (11%), Positives = 168/639 (26%), Gaps = 106/639 (16%)

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI- 411
           +++++    +        I+  D+ V+VR   D P      R       + V  +   I 
Sbjct: 351 VADLLRRSHLLE-----GIRWNDMAVIVRSTADIPS----LRRALLSAGVPVQEDPSDII 401

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-----------QR 460
           L++   +  L+   R I  +        +   P+       + ++              R
Sbjct: 402 LSEQRIVSALILAVRAIYQELSAQELEELALGPIGGADTVTLRRLFRGLRKAEMHAGGNR 461

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF---------TLILGAK 511
              E + E I    +   ++ +  ++ +     +A                    IL   
Sbjct: 462 RAIEIMRELIDPKESEEQTQLREQVEAVLTDRELAVVDKIRAVLVRGAQPGSVEEILWEI 521

Query: 512 KGRQQFISRF----------GNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISELEQY 557
                  S            G +    LD      +      E+   +S+   +  + + 
Sbjct: 522 WDASALSSHLQTVSLRGGVRGAQADRDLDAVMALFDAAGDWVERRPTASITSFVRHIAEQ 581

Query: 558 PPTIKRAHS--ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                      A  + VRI+T H + G +   V +       +                D
Sbjct: 582 ELPTGVRDRRLATADAVRIVTAHGSLGQQWHTVIVAGVQEGTWPSLQETGTLFGQEDLID 641

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                        + I  +          +E  RL +V  TR + +++I    +  ++  
Sbjct: 642 L----------IDSGIEPNTYISRSAEKLKEEKRLFHVARTRGTHRVVITAVESPESDTA 691

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSIN-----------------KDEWIAYEWSTHH 718
           +    +   + +S            +                                 +
Sbjct: 692 AEPSRFLQGIAESKVQGPTTDPETASVQSEIDTETVHLDQYVRLLSVPSIVAELRRELAN 751

Query: 719 PENTPLEREETIKQLM---------DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
           P++    RE+  +QL             +       P +    +   ++PS I+      
Sbjct: 752 PDSPQRRREQAARQLARLALHQVPGARPEQWWGYGGPSETTSLDISKVSPSLIENALLCP 811

Query: 770 LESLLSD-------NQTFNRGLIIHKLLQVI-----FTLPEHKRKNFITSYCTKNAKLWP 817
           L + L              +G + H   + +         E        +     A   P
Sbjct: 812 LRARLERLVEEENTPIHMLKGTLAHAFAEAVGRGVDPNEAEQLVTQAFEALLDAPAWSLP 871

Query: 818 AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII--ISGRIDQISISQ 875
               +    ++ + L +          +  E+                + GRID++  + 
Sbjct: 872 HHMSQ--WSTMLQRLAH----WIDVSHAQRELVGVEVPVNVVVAPGVELRGRIDRLERND 925

Query: 876 -QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                I ++KT      + E        QL  Y+  L  
Sbjct: 926 AGEFHIVDFKTGKQAVTKDEANENK---QLLAYQLALHR 961


>gi|311739799|ref|ZP_07713633.1| probable helicase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304872|gb|EFQ80941.1| probable helicase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 1035

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/628 (12%), Positives = 170/628 (27%), Gaps = 102/628 (16%)

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN-DRFILTDHLAIKDLMALGRFI 428
            +  +DI V+VR   D   +    R       + V  +    +L +   +  ++   R +
Sbjct: 332 GVPWRDIAVIVRSTGDIGQM----RRTLLAAGVPVHISPTDVVLAEQRLVSAVLLALRAL 387

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---------------VYEYIQKF 473
                +     +L  P+       + ++       ++               + ++  + 
Sbjct: 388 EEDLSNSELEELLTGPVGGADPVTLRRLIRGLRRWDSTTRGIDSLRGLLYGELPDFNGQL 447

Query: 474 ANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISRF------GNEVI 526
                S  + V   +      +A   S  +    +  A +   +  +        G++  
Sbjct: 448 TEREYSILERVRAVLSAGRDALASGDSVEEVLWAVWSATELDNRLQASALRGGATGSQAD 507

Query: 527 DVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH--SANHNEVRIMTVHTA 580
             LD      +      E+   SSL+  ++ + +           +A    V I+T H A
Sbjct: 508 RDLDAMMALFDAAGDYVERRPDSSLRAFLTHITEQELPTGVRDRRTAIPQAVEILTAHGA 567

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            G E   V +       +                D       P +               
Sbjct: 568 VGREWDTVIVAGAQEGSWPSLGETGSIFGQEDLIDLLDHDIDPDTPV----------SHV 617

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            S   E  RL +V  TR   +L+I    N   +  S    +         +       + 
Sbjct: 618 ASRLAEERRLFHVATTRHRQRLLIAAVENPEGDTVSEPSRFISEFAGRGVDVPGQAARRQ 677

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIK----------------------------- 731
                +   +  E     PE  P+   + ++                             
Sbjct: 678 AKRALRRTQLPRELGLDVPEPAPVSLRDGLEVDPLDVAVLSVPAFVAQLRRVVTNQESGE 737

Query: 732 ------------------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-- 771
                                  ++         +  ++    L+PS ++      L+  
Sbjct: 738 VERKQAARQLARLAAADIPGAHPEQWWSARSVAAEMPLHTSGSLSPSRVEALLNCPLKAV 797

Query: 772 -----SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                   S  +   RG + H   + I    + ++   +     +  +  P  + +  L 
Sbjct: 798 LGNVAEDPSTEEHLLRGTLAHAFFEAIGRGMDAEKAKLLVMEAFERIQDVPQWQLRFRLD 857

Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPK-KDIIISGRIDQISISQQN-IFIFEYK 884
             + LL+        S  +     V   +     +++ I G +D++    +    + + K
Sbjct: 858 EFSTLLDRAREWARQSEVNQELAGVEIPVGVRVSEEVRIGGYMDRLLRDGEGNYLVVDLK 917

Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILK 912
           T    P + E        QL  Y+  L 
Sbjct: 918 TGRSKPAKKE---GEDHVQLMTYQLALA 942


>gi|297157456|gb|ADI07168.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
            BCW-1]
          Length = 1132

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/540 (12%), Positives = 148/540 (27%), Gaps = 85/540 (15%)

Query: 440  MLKSPLFNFSEDDIFKICTQRHETETVYE---------------YIQKFANCGISKFQHV 484
            +L SPL      D+ ++     E E                      +        +   
Sbjct: 519  LLASPLGGMDAADLRRLGRALREEERAAGRAVPRPSDVLLAEALAEPERLVAHDPAYARG 578

Query: 485  IKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQFISRF------GNEVIDVLDE-- 531
             + +  L+  A+       +       +       Q+           G      LD   
Sbjct: 579  AQRLGLLLRKARELLAGGGTAEQALWELWDGTSWPQRLERAAHRGGAAGRNADRDLDAVC 638

Query: 532  --FLNFTLRNEQNSYSSLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPV 587
              F       E+         + E++              + + VR+MT H +KGLE  +
Sbjct: 639  ALFETAARAEERVGGRGALNFLDEIDAQDIAADTLSRRLVSPDAVRLMTAHRSKGLEWRL 698

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V +      ++     +   +        G+   +                   +   E 
Sbjct: 699  VVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLSPG----------------ALLAEE 742

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM------------VYDSFHNDERV 695
             RL YV  TRA+++L++      +++     R   ++               S       
Sbjct: 743  RRLFYVAATRAAERLVVTAVKAAADDGDQPSRFLAELGVEPVDVTQRPRRPLSVAALVAE 802

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP-----IKND 750
             +    +    +                 + +               L+ P        D
Sbjct: 803  LRATTVDPAASEALRDAAARRLARLAALRDDDGQPLVPAAHPYRWWGLYEPTHSAVPLRD 862

Query: 751  INEPYILNPSTIDTK-GKTNLESLLSDN--------QTFNRGLIIHKLL-QVIFTLPEHK 800
             + P  L+ S +D      +L+  L                G ++H L  +V        
Sbjct: 863  RDRPVALSGSALDQLVNTCSLQWFLGREVKADTPSTAAQGFGNVVHVLADEVASGRTPAD 922

Query: 801  RKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
                +          + +A     +E ++   ++ R L   +M         +E      
Sbjct: 923  LAVLMERLDSVWDALSFDAPWKSRQEKEHARAALERFLRWHVMERGGRAPVATEHEFDVT 982

Query: 855  INCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            +      + I G +D++    +   ++ ++KT     Q +      H  QL++Y+  +++
Sbjct: 983  LEADAYQVRIRGSMDRVEADEEGRAYVVDFKTGK---QAVTRDAVAHHPQLAVYQLAVRE 1039



 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 112/347 (32%), Gaps = 34/347 (9%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L      Q +  + +    +       +  A  ++  S  +       
Sbjct: 26  AAVELRDRMAARLGGARGPQATTFHSFCYALVRAHQDMDI-FADPVRLLSGPEQDVVVRD 84

Query: 68  LLSS---------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+            +      +  + T+    +   +      ++   + +  R     
Sbjct: 85  LLAGQAELEREGRAAVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLDPRALGDF 139

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             +        A    A Y +      VLD+ +L+     L ++ D +A     +    +
Sbjct: 140 AARQGRPDWRAAAAFLAEYLDVLDAQGVLDYAELVHRAVLLAERSDTAAD----LAARYD 195

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + +DE QDT + Q  ++R+L              RTL A GD  QSIY+F GA+   +L
Sbjct: 196 AVFVDEYQDTDVAQLRLLRALAG----------GGRTLVAFGDPDQSIYAFRGADVGGIL 245

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                  +R    G+   +  L  S RS A +L     +       +  ++         
Sbjct: 246 EFPYSFPRR---DGRPAPVQVLTTSRRSGATLLAATRLLTHRMPLTRLPADSVRAHRELS 302

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
           + R    G V+ +    +  +              D +P    A ++
Sbjct: 303 AVR--GGGRVEAYTYPTAGSELDNIADILRRAHLEDGVPWREMAVLV 347


>gi|308232372|ref|ZP_07415856.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu001]
 gi|308370185|ref|ZP_07420579.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu002]
 gi|308371268|ref|ZP_07424386.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu003]
 gi|308372457|ref|ZP_07428753.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu004]
 gi|308373668|ref|ZP_07433254.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu005]
 gi|308374804|ref|ZP_07437456.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu006]
 gi|308376022|ref|ZP_07445852.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu007]
 gi|308377256|ref|ZP_07441664.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu008]
 gi|308378224|ref|ZP_07481948.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu009]
 gi|308379442|ref|ZP_07486299.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu010]
 gi|308380604|ref|ZP_07490517.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu011]
 gi|308406080|ref|ZP_07495063.2| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu012]
 gi|308214067|gb|EFO73466.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu001]
 gi|308324998|gb|EFP13849.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu002]
 gi|308329217|gb|EFP18068.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu003]
 gi|308333049|gb|EFP21900.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu004]
 gi|308336735|gb|EFP25586.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu005]
 gi|308340575|gb|EFP29426.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu006]
 gi|308344512|gb|EFP33363.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu007]
 gi|308348509|gb|EFP37360.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu008]
 gi|308353140|gb|EFP41991.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu009]
 gi|308356882|gb|EFP45733.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360882|gb|EFP49733.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu011]
 gi|308364569|gb|EFP53420.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           SUMu012]
 gi|323718061|gb|EGB27243.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 703

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 92/691 (13%), Positives = 185/691 (26%), Gaps = 169/691 (24%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +            S +    +L+              L+        +  + 
Sbjct: 71  AAGEMRSRL--RALDAAARTGSGVGAVQALTFHAAAYR------QLRYFWSRVIADTGWQ 122

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL S F        +  +    +    DL  +++ ++   I   +        +      
Sbjct: 123 LLDSKFAVVARAASRTRLHASTDD-VRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLD 181

Query: 128 TL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + + YE  K +   +   D            +  A +  +        ++DE Q
Sbjct: 182 AAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQ 241

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q  V+ +   D             L  VGD  Q+IYSF GA P+ +L   R    
Sbjct: 242 DVTPLQQRVLSAWLGD----------RDDLTVVGDANQTIYSFTGASPRFLLDFSRRFP- 290

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    +++ L   +RST  ++++ ++V +                + R S   + G
Sbjct: 291 -------DAAVVRLERDYRSTPQVVSLANRVIAAARGR-------VAGSKLRLSGQREPG 336

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                          S  + S     A  +A +I+ +I + T     
Sbjct: 337 PVP-------------------------SFHEHSDEPAEAATVAASIARLIASGTP---- 367

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   ++ +L R    + +             I+          +   IK  +   +
Sbjct: 368 ------PSEVAILYRVNAQSEVYEEAL----TQAGIAYQVRGGEGFFNRQEIKQALLALQ 417

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            +  ++ D +   ++++ L                                 ++ +   +
Sbjct: 418 RVSERDTDAALSDVVRAVLAPLGLTA---------------------QPPVGTRARERWE 456

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +  L  +                     +   R   ++  +L E        E      
Sbjct: 457 ALTALAELVD------------------DELAQRPALQLPGLLAELRRRA---EARHPPV 495

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           +Q                       V + ++H AKGLE   VFLV          H    
Sbjct: 496 VQG----------------------VTLASLHAAKGLEWDAVFLVGLADGTLPISH---- 529

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                       L         EE  RLLYVG+TRA   L +  
Sbjct: 530 ---------------------------ALAHGPNSEPVEEERRLLYVGITRARVHLALSW 562

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             + S   + +++    +   +         
Sbjct: 563 ALSRSPGGRQSRKPSRFLNGIAPQTRADPVP 593


>gi|315929648|gb|EFV08828.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 387

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 103/301 (34%), Gaps = 81/301 (26%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   Y+  KK+   +DF DL+IN  DLLK+             E + IL+DE QD
Sbjct: 168 EIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEE----------KYEFDEILVDEYQD 217

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I +               ++LF VGD  QSIY+F+GA+   +   K      
Sbjct: 218 TNTLQSSLIEAFHS------------KSLFCVGDYDQSIYAFNGADINIIGGFKDRF--- 262

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +   I  L  ++RS+  IL + +KV    E                         
Sbjct: 263 -----KDAKIFSLNKNYRSSRSILALANKVILNNERLYPK-------------------- 297

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
               E +V+++D    P   ++   FD                  I+ MI          
Sbjct: 298 ----ELIVTRNDEFKAPSLLTFEELFDQ--------------YQNIAKMI---------L 330

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +  ++I V+ R       +    R       I+ V            +K L    R 
Sbjct: 331 TSGVSLEEIAVIFRNNSSADGVEVALRE----QGIASVRKGSGSFLKVWKLKLLAPCLRL 386

Query: 428 I 428
            
Sbjct: 387 W 387


>gi|289825128|ref|ZP_06544463.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 547

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 29/261 (11%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 306 QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRETVAQEKRRRGELGFDDMLSRLDTALR-S 364

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 365 ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 416

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 417 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 466

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
           A    +   + ++           V          +    P    W    +S       S
Sbjct: 467 AFMFRDIPFSPVKFAPRNQSLQFKV----------NDAPQPAMTLWLMEGESCGSGDYQS 516

Query: 344 ILARRIAYTISNMIGTDTIFS 364
            +A+  A  I + +       
Sbjct: 517 YMAQVCATQIRDWLRAGQTGD 537


>gi|126664583|ref|ZP_01735567.1| Superfamily I DNA and RNA helicase [Marinobacter sp. ELB17]
 gi|126630909|gb|EBA01523.1| Superfamily I DNA and RNA helicase [Marinobacter sp. ELB17]
          Length = 757

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 95/749 (12%), Positives = 218/749 (29%), Gaps = 118/749 (15%)

Query: 14  ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS--LLSS 71
           E   + +       + +I  Y ++ +      + +       A+     E  +    LS 
Sbjct: 73  ERKLQAVSGNSGLALPEIRTYHAMGLRLYRRFVREGYLPNFSANILSDQEINYQVFQLSR 132

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             + +    +     +E  + +    +++K S      + +     +  +  +       
Sbjct: 133 RLVPEDLAEELRRNKKEFIETAIGFIDRVKTSLSPAEIVFEDMEFTERQRYLIDL----- 187

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                +E+ +K    + F D++      + +      ++  +  +++ IL+DE QDT+ I
Sbjct: 188 --FHSFEQWRKGQSRISFADMLYEPVMAIHQNP---PLQRLVANKMDLILVDEYQDTNEI 242

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL-REKRINQKRATN 250
           Q  ++R +  D             +  VGD  Q+IY F GA+P+ +L R     +     
Sbjct: 243 QHLLLRYVAGD----------RARVTVVGDPDQTIYEFRGAKPEFILRRFSDEFESPLEQ 292

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                    L  SFR    +  + + +       + L   +  +               +
Sbjct: 293 --------TLSYSFRYGHRVALLANHLIHNNSGRKDLLCHAHPSTP-----------ATI 333

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                  +D+    Q     +            + ++ +A  +  +        +  K  
Sbjct: 334 ITLHRHDNDADTVLQLLQVMTAEQLTNTAILFRVWSQSVAIELKLLARQVPYRIDAGKGA 393

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           + ++++                   L       VV      L D   ++    L RF   
Sbjct: 394 LFSREV--------------QAIMALLQ-----VVTGQLKQLPDSDRLELARQLLRF--- 431

Query: 431 QEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
               L    +  L   L  F ED   +I         +       A     K + + + +
Sbjct: 432 PHVGLKEPELDQLARFLAGFGEDWAQRI---------LVMDFNALAPMAARKLRKLAETL 482

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQ-----QFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           ++L             ++   +                  E I+ +  F  +    + N+
Sbjct: 483 NQLSG--YRGPVAGLISVYADSTDLYDGIRSLALTHDNAEERINTIQGFRQYLKSLDINA 540

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +L  L +  +Q         +     V + T+H  KGLE P V +     +       
Sbjct: 541 EKALAHLHTLKQQAGAHRNDGQNTKPVGVLLSTIHRTKGLEWPTVIVPGLQEKYLP---- 596

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                        S   +   ++  E   RLLYV +TR+  QL 
Sbjct: 597 ----------------------------YSPRAEDNLRAHLESERRLLYVAITRSRQQLH 628

Query: 664 ICKHSNTS----NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +     +     + ++   R   +  ++              ++           S  + 
Sbjct: 629 LITRPASGRPHLDGEQGPSRFVAECCFELSDELGGALHQPDGSNALTLNAPLTAISERYG 688

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIK 748
            +  +       Q  ++Q + ++      
Sbjct: 689 RHEGITLSGETSQEDNDQPLWQRERLQHA 717


>gi|212640059|ref|YP_002316579.1| ATP-dependent DNA helicase [Anoxybacillus flavithermus WK1]
 gi|212561539|gb|ACJ34594.1| ATP-dependent DNA helicase [Anoxybacillus flavithermus WK1]
          Length = 603

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 83/614 (13%), Positives = 185/614 (30%), Gaps = 142/614 (23%)

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
               +K++  Q I+    +      +  D+        N   + +  + +  LA  +   
Sbjct: 120 SEKKRKSLFKQIISDFELEHLGLSIEEMDK----ERTLNIEGISEVEVPTYDLALRVAIE 175

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YE+    N ++DF D++     L++ ++   ++R  ++ +   +LIDE QD      E++
Sbjct: 176 YEKRLHTNGLVDFVDIVKYATTLIQNQE---YVRKCLEAKFPWVLIDEYQDLGKPLHEMV 232

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            SL            +   +FAVGD  QSI+ ++GA P  ++                 +
Sbjct: 233 LSLFYK---------TNIKIFAVGDPDQSIHGYNGAIPDYLIELY---------HNPSIT 274

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I+L  ++RS  DI+                                        E  + 
Sbjct: 275 QIQLKTNYRSNQDIIDAS-------------------------------------ELALQ 297

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                    +    + F  +  E        ++A  I           + ++  I  ++I
Sbjct: 298 DKRGYKAGARLGENAEFHFITCEEEMFDQYVKVAKEI---------IPSCREAGIPLEEI 348

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            ++V   K    +  +         +      +F       +  L     + + +     
Sbjct: 349 AIMVGSNKHAKELGRILDE----SGVPFYIT-KFDFQRSDVVLWLERCAIWCVDKSKQSF 403

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
                   L  F   ++ KI  +   ++    + ++  +   S  +H I  + + +    
Sbjct: 404 NE------LVGF-WINLHKIHDRPLLSKEQILFRRRLFDTLTSSIKH-IDDLGKWLTFVV 455

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                +  +L+  +     +          + L++ +  T+  E   Y            
Sbjct: 456 NE--LELSSLLTDSPVYPDEL---------ENLNKLMKLTIEGEFRDY------------ 492

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
              +         N+V I T H +KGLE  VV L+      F                  
Sbjct: 493 -DLSKFGKLGKPGNQVTITTRHGSKGLEFEVVILLGMEEDHFPS---------------- 535

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                   +    E +R+ +V ++RA     + +    + + K 
Sbjct: 536 ------------------YWNKQDEKRLSEEHRVFFVCVSRAKRVCYLLRSQKYTKKTKY 577

Query: 677 NQRTWYDMVYDSFH 690
             + +       + 
Sbjct: 578 GLKKFDYAPSRFWE 591


>gi|127512196|ref|YP_001093393.1| UvrD/REP helicase [Shewanella loihica PV-4]
 gi|126637491|gb|ABO23134.1| UvrD/REP helicase [Shewanella loihica PV-4]
          Length = 678

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 89/543 (16%), Positives = 163/543 (30%), Gaps = 105/543 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                Y E  + N +  FED +I    LL+       I   +     HI++DE QD +L+
Sbjct: 172 RAYGCYCELLEANGLRTFEDSMIEAVSLLR-------IYPGLVARFKHIIVDEYQDVNLV 224

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E+IR LT+              +  VGD  Q IY + GA+P  +       +++  N 
Sbjct: 225 QHEMIRLLTKPDTS----------VMVVGDLNQCIYEWRGAQPDFMDGL---FEQQFPNT 271

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               ++ +L  +FR   ++  + + V     +                          L 
Sbjct: 272 ----TVFQLSCTFRFGHELSLIANSVIRRNSSK-------------------------LT 302

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              VS   +     +    +    +    +    ++ I    +  +    +      R  
Sbjct: 303 RLCVSHPSTPKTEVKLHLDNCLSEVLSAIATENGSQAILSRSNARLTEVELVLRLCGRTY 362

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  +    +  R +          L     + V G+ R I       + L    R    +
Sbjct: 363 RYLNGSSSLYSRSE-------IGLLVVGVLLCVYGDLRLIENHPCKREMLYGFLREAGIR 415

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE- 490
                    L         D +            ++E         + +   V     + 
Sbjct: 416 WQKGQVKEAL---------DALMTQVDVFSVLGRLFE-NSPHQRERLERLASVRNKDDDS 465

Query: 491 --LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
               ++ Q  S   F   +      R     R     +D ++E L           S+  
Sbjct: 466 VLASNVLQHLSLAGFIEGVGSDSVRRTASNDRL--RGVDRIEELL----------ISNPI 513

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +  + L        +  SA+   + + T+H +KGLE   V L+      F          
Sbjct: 514 DARTFLNLI--LHPQDISADSEPITLATIHGSKGLEWDHVILIGLNDCEFPGGKPDSGTQ 571

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
           +P+L                        + +     E   RL YVG+TRA  QL +    
Sbjct: 572 LPALTS----------------------ESISNEELEVERRLFYVGITRAKHQLHLVAPL 609

Query: 669 NTS 671
           + S
Sbjct: 610 DES 612


>gi|182419368|ref|ZP_02950620.1| putative ATP-dependent DNA helicase rep [Clostridium butyricum
           5521]
 gi|237666586|ref|ZP_04526571.1| putative ATP-dependent DNA helicase rep [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376699|gb|EDT74271.1| putative ATP-dependent DNA helicase rep [Clostridium butyricum
           5521]
 gi|237657785|gb|EEP55340.1| putative ATP-dependent DNA helicase rep [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 600

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 86/607 (14%), Positives = 163/607 (26%), Gaps = 144/607 (23%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI----KIRDRFNTYKM 119
           E     +  +      P K I  ++ NK    + + L     +            N   +
Sbjct: 99  EVLERFAHLYSYDIPLPIKIISDKDKNKLFNTIVDDLNLGNADIKIGDMDKERTLNISGI 158

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
               + S  +A  +   YE+       LD+E ++     L++      ++R  + +    
Sbjct: 159 SSVEIESYDVALKVAIEYEKRLYAKGYLDYEAVVKFATILIQNE---QYVRKSLSKRFPW 215

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           ILIDE QD      E+I +L  +         +   +FAVGD  QSIY F GA P  +  
Sbjct: 216 ILIDEYQDLGRPLHEMILALFTN---------TNIKIFAVGDPDQSIYGFTGAIPDYLNE 266

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                             IEL  ++RS  DI+             +  +           
Sbjct: 267 IYS---------KDDIISIELKNNYRSNQDIIDASQMFLKENREYKAKT----------- 306

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                               L +++  + +   I      M   
Sbjct: 307 -----------------------------------RLREQADFNFVVCNIGIEEQYMQCI 331

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             +    + + +  +DI V+V+  +    +  + +       I               I 
Sbjct: 332 QNVIPKYRSKGVTFEDIAVIVQYNRHAKELASICKEE----NIPYYIAKHDYDRSDFIIW 387

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
                     +                  S ++IF           V +   + +     
Sbjct: 388 IEKCAAWVTDNTTQ---------------SFEEIFDFWKNLINRHCVSKINSQNSIFEKR 432

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLR 538
               V+K                +   I+        F       E I  +D+F+     
Sbjct: 433 NLLKVLKS-----SKVYSDKLEKWVKFIINTLGIIDLFDKSIIYPEEISNIDKFIKVIKE 487

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                        S        +        N++ I T H++KGLE  VV ++      F
Sbjct: 488 -------------SGYSNENIKLFSKIGKPENQITITTRHSSKGLEFEVVIILGMEEGNF 534

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                 + + +   EE  R+ +V ++RA
Sbjct: 535 PD-----------------------------------YRSVTQRQIEEEERICFVCISRA 559

Query: 659 SDQLIIC 665
            +  ++ 
Sbjct: 560 KNACVLV 566


>gi|15610334|ref|NP_217714.1| ATP-dependent DNA helicase II UVRD2 [Mycobacterium tuberculosis
           H37Rv]
 gi|15842783|ref|NP_337820.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551]
 gi|31794374|ref|NP_856867.1| DNA helicase II [Mycobacterium bovis AF2122/97]
 gi|121639082|ref|YP_979306.1| putative DNA helicase II [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663056|ref|YP_001284579.1| putative ATP dependent DNA helicase UvrD2 [Mycobacterium
           tuberculosis H37Ra]
 gi|148824393|ref|YP_001289147.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           F11]
 gi|167968311|ref|ZP_02550588.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           H37Ra]
 gi|215413071|ref|ZP_03421772.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215428668|ref|ZP_03426587.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           T92]
 gi|215447494|ref|ZP_03434246.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           T85]
 gi|219559249|ref|ZP_03538325.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           T17]
 gi|224991574|ref|YP_002646263.1| putative DNA helicase II homolog [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|254552294|ref|ZP_05142741.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260202350|ref|ZP_05769841.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           T46]
 gi|260206542|ref|ZP_05774033.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           K85]
 gi|289444768|ref|ZP_06434512.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           T46]
 gi|289555470|ref|ZP_06444680.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis KZN
           605]
 gi|289571419|ref|ZP_06451646.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           T17]
 gi|289575912|ref|ZP_06456139.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           K85]
 gi|289751883|ref|ZP_06511261.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           T92]
 gi|289759332|ref|ZP_06518710.1| DNA helicase II [Mycobacterium tuberculosis T85]
 gi|294993866|ref|ZP_06799557.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           210]
 gi|297635844|ref|ZP_06953624.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis KZN
           4207]
 gi|297732840|ref|ZP_06961958.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis KZN
           R506]
 gi|298526674|ref|ZP_07014083.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|313660173|ref|ZP_07817053.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis KZN
           V2475]
 gi|54039837|sp|P64321|UVRD_MYCBO RecName: Full=Probable DNA helicase II homolog
 gi|54042360|sp|P64320|UVRD_MYCTU RecName: Full=Probable DNA helicase II homolog
 gi|2827608|emb|CAA16663.1| PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD2 [Mycobacterium
           tuberculosis H37Rv]
 gi|13883108|gb|AAK47634.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551]
 gi|31619970|emb|CAD95314.1| PROBABLE DNA HELICASE II HOMOLOG UVRD2 [Mycobacterium bovis
           AF2122/97]
 gi|121494730|emb|CAL73211.1| Probable dna helicase ii homolog uvrD2 [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148507208|gb|ABQ75017.1| putative ATP dependent DNA helicase UvrD2 [Mycobacterium
           tuberculosis H37Ra]
 gi|148722920|gb|ABR07545.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           F11]
 gi|224774689|dbj|BAH27495.1| putative DNA helicase II homolog [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289417687|gb|EFD14927.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           T46]
 gi|289440102|gb|EFD22595.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis KZN
           605]
 gi|289540343|gb|EFD44921.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           K85]
 gi|289545173|gb|EFD48821.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           T17]
 gi|289692470|gb|EFD59899.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           T92]
 gi|289714896|gb|EFD78908.1| DNA helicase II [Mycobacterium tuberculosis T85]
 gi|298496468|gb|EFI31762.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A]
 gi|326902576|gb|EGE49509.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           W-148]
 gi|328459968|gb|AEB05391.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis KZN
           4207]
          Length = 700

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 92/691 (13%), Positives = 185/691 (26%), Gaps = 169/691 (24%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +            S +    +L+              L+        +  + 
Sbjct: 68  AAGEMRSRL--RALDAAARTGSGVGAVQALTFHAAAYR------QLRYFWSRVIADTGWQ 119

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL S F        +  +    +    DL  +++ ++   I   +        +      
Sbjct: 120 LLDSKFAVVARAASRTRLHASTDD-VRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLD 178

Query: 128 TL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + + YE  K +   +   D            +  A +  +        ++DE Q
Sbjct: 179 AAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQ 238

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q  V+ +   D             L  VGD  Q+IYSF GA P+ +L   R    
Sbjct: 239 DVTPLQQRVLSAWLGD----------RDDLTVVGDANQTIYSFTGASPRFLLDFSRRFP- 287

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    +++ L   +RST  ++++ ++V +                + R S   + G
Sbjct: 288 -------DAAVVRLERDYRSTPQVVSLANRVIAAARGR-------VAGSKLRLSGQREPG 333

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                          S  + S     A  +A +I+ +I + T     
Sbjct: 334 PVP-------------------------SFHEHSDEPAEAATVAASIARLIASGTP---- 364

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   ++ +L R    + +             I+          +   IK  +   +
Sbjct: 365 ------PSEVAILYRVNAQSEVYEEAL----TQAGIAYQVRGGEGFFNRQEIKQALLALQ 414

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            +  ++ D +   ++++ L                                 ++ +   +
Sbjct: 415 RVSERDTDAALSDVVRAVLAPLGLTA---------------------QPPVGTRARERWE 453

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +  L  +                     +   R   ++  +L E        E      
Sbjct: 454 ALTALAELVD------------------DELAQRPALQLPGLLAELRRRA---EARHPPV 492

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           +Q                       V + ++H AKGLE   VFLV          H    
Sbjct: 493 VQG----------------------VTLASLHAAKGLEWDAVFLVGLADGTLPISH---- 526

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                       L         EE  RLLYVG+TRA   L +  
Sbjct: 527 ---------------------------ALAHGPNSEPVEEERRLLYVGITRARVHLALSW 559

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             + S   + +++    +   +         
Sbjct: 560 ALSRSPGGRQSRKPSRFLNGIAPQTRADPVP 590


>gi|51894104|ref|YP_076795.1| putative ATP-dependent DNA helicase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857793|dbj|BAD41951.1| putative ATP-dependent DNA helicase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 649

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 84/652 (12%), Positives = 179/652 (27%), Gaps = 107/652 (16%)

Query: 46  ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKL-KKSQ 104
              + +TL  A     I        +  L ++    ++       + +P+L  +L +  +
Sbjct: 89  DEVRRRTLVNALTAGWIAAHRDTWEA--LVREDVRNRDQALARWAEHTPELMSRLIQSFK 146

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
              +   D  +  +    T      A  +   Y+ A  +  ++DF+D+++    LL    
Sbjct: 147 ARQLSPDDALSLTRGLPDTEPL-RWAAEIYRDYQRALAREGLVDFDDMMLGAYRLLTGEP 205

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +  ++ Q   ++  DE QD+  +Q +V+R L                   VGD  Q
Sbjct: 206 D---LLERLRQRWTYVFEDEAQDSYRLQEQVLRLLAG----------PGGNFVRVGDPNQ 252

Query: 225 SIY-SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           +I  SF  AEP       R              +  L ++ RS+ +I+ + +++      
Sbjct: 253 AIMGSFTTAEPALFRAFIRE---------PGVDVRPLTMAGRSSQEIIDLANELVRWTC- 302

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                               +   +Q   + + Q + +   ++     +     +    +
Sbjct: 303 --------QDYPEPGCRDALEPQYIQRVPRGMGQSNPEPEGRRVLVRDFPAYEEEMDRIA 354

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
            LA R                    R+     + VL+        +      L  D +  
Sbjct: 355 GLAAR------------------SVRLYPEATVGVLLPTHA----MVDRMLALLRDREAP 392

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
            +   R                                           + ++       
Sbjct: 393 AIPVGRT----------------------------------------APLERLRLGSDLL 412

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI--LGAKKGRQQFISRF 521
             +            +    +  Y+   +  A   +      +   L             
Sbjct: 413 AALAFLAAPHVPERRAAAARLEPYLDRWLADAVQPADVLLLRMAADLRLSGEDLALAQYL 472

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
                 +L+E   +   +     +        L       ++        V + T H AK
Sbjct: 473 ALRARRLLEEEPLYGPGDVARELADALGRSGWL-ADALYDRQGFEPQPGVVYVTTCHAAK 531

Query: 582 GLESPVVFLVDTGSQVFSHK------HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           GLE   V++       F+          +   +   +N +      + Q      +  D 
Sbjct: 532 GLEWDTVYVAGLTRGFFTGGLRDRTLSEQWSLVPGQVNPEARALALLDQLAGAGGVSEDP 591

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
               K+    E  RLLYV +TRA   L++  H        +        +  
Sbjct: 592 AAAFKREQIGEKIRLLYVAITRARRNLLLSYHWRNERGYDTAPPPAVVRLRQ 643


>gi|153831455|ref|ZP_01984122.1| ATP-dependent DNA helicase rep [Vibrio cholerae 623-39]
 gi|148873064|gb|EDL71199.1| ATP-dependent DNA helicase rep [Vibrio cholerae 623-39]
          Length = 320

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/366 (11%), Positives = 119/366 (32%), Gaps = 65/366 (17%)

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +I+L  ++RST+ IL   + + +   +    +  S      +                
Sbjct: 1   LKLIKLEQNYRSTSRILRAANILIANNPHVYQKALFSELAEGEKL--------------- 45

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                                +   ++    A R+   I          ++      + +
Sbjct: 46  --------------------KVILANNEDHEAERVTAEI---------IAHKFLNRTEYR 76

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           D  +L R    + LI           ++    +          IKD+MA  R +++ +DD
Sbjct: 77  DYAILYRGNHQSRLIEKSL----TQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDD 132

Query: 435 LSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI------SKFQHVIKY 487
            +F+ ++ +P        + K+        ++++    +               +   ++
Sbjct: 133 NAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEW 192

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRNEQN 542
           +  +   A+  +  +    ++   +            +     +  + +  ++ + + + 
Sbjct: 193 LVAIADNAERGNTVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEG 252

Query: 543 SYSS-----LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                    L+E++  L       +   + + + V++MT+H +KGLE P V+L+     +
Sbjct: 253 DNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGI 312

Query: 598 FSHKHI 603
             H+  
Sbjct: 313 LPHQTS 318


>gi|307294873|ref|ZP_07574715.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1]
 gi|306879347|gb|EFN10565.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1]
          Length = 614

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 76/572 (13%), Positives = 152/572 (26%), Gaps = 61/572 (10%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   + A Y    + N +LDF  L       L+ R V       +      +L+DE QD
Sbjct: 27  RLIAGIAADYRTYLRDNNLLDFSSLEEAMLTRLQARRVPT-----LLAGTAVVLVDEYQD 81

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +   L           ++  +   VGD+ QS+Y F GA  +           R
Sbjct: 82  TNALQEAIYFELVL---------ATGASFTVVGDDDQSLYRFRGATIELFRAFVDRCHTR 132

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT-IRHRSSRIGQVG 306
                Q    + L  ++RST +I+   +       N            IR  ++      
Sbjct: 133 LGTVPQGP--LYLVENYRSTPEIVEFFNGFIREDPNFTPARIQPPKPVIRANAAASEMPV 190

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                    +  +       + +       P      +L                   + 
Sbjct: 191 LAMFRPDAATLANDLSGFLSDVFRGGGYRDPNGRYPDLL---------RRAADGGDLGDA 241

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                 A ++    R     P      R       +++       L D   ++ L+ L  
Sbjct: 242 VLLGFSALEMQRPFRGNLPKPRFAHHLRNALLGRDMAMFNPRGRSLRDIEQVEQLLGLAI 301

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             +   +               + +  F I       + +     +         Q  + 
Sbjct: 302 LAIDPPNRQGEHLFETMT---ITNEAKFFIRRWVAAGQALLAA--EPTPVYGRPLQEEVA 356

Query: 487 YIHELIHIAQFCSP--HDFFTLILGAKKGRQQFI--SRFGNEVIDVLDEFLNFTLRNE-- 540
             +  +      +P         L    G   ++       E    L+       +    
Sbjct: 357 DWNNFVLARPNSNPKSSSRDWPFLDVLYGLVPWVPHFEEDPEGQVYLEALSRAAGQASGF 416

Query: 541 -----------------QNSYSSLQELISELEQYPPTIKRAHSAN------HNEVRIMTV 577
                             +   S+  ++ ++                     + + +MT+
Sbjct: 417 SAYSGKLVRPVDPNADTDHGRRSILAILRDVIAPIAENVIEVDEEIMPSVPRDRLNVMTI 476

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H AKGLE P+V +             +      + +    I   +    +    +     
Sbjct: 477 HQAKGLEYPLVIVDVGADFSTDSPKNRFRRFPDTPSATAQIEDALAPFTAELGPLRTARS 536

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
            L   + E+  RL YV  +R    L++     
Sbjct: 537 GLD-RSFEDLIRLYYVAFSRPQRVLMLVGCEK 567


>gi|46448281|gb|AAS94936.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio vulgaris
            str. Hildenborough]
          Length = 1070

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 176/659 (26%), Gaps = 178/659 (27%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             + +  + + + +       LS+  G+   L +  TL            F          
Sbjct: 529  ARRIVAVTFTRRAATEMDERLSVTLGDGAPLPRTDTLHAL--------AFEFWHRSSAQP 580

Query: 77   KFTPQKNIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 +    +   + +PD   + L+++ DE    R+R     +             L  
Sbjct: 581  PVLLSEEAARRVFAEANPDATAQTLREAWDELAVCRERMQVCSLA---------LAPLLD 631

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y + K    + D+ DL+    + +                  H+L+DE+QD S +Q  +
Sbjct: 632  RYVQQKAAWNLADYTDLLEFWLEQIHN--------GLYVPPWRHVLVDEIQDLSPLQLAL 683

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +R+L                 F +GD  QSIY F GA                       
Sbjct: 684  VRALL---------PPGGEGFFGIGDPDQSIYGFRGAHGDVKGALDEAWP--------GL 726

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            S++ L  ++RS+A +L     +         L          R                 
Sbjct: 727  SVVTLRANYRSSASVLDAAGALMEGRSACGRLRAVRDLPADIRLF--------------- 771

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT--DTIFSNGKKRVIQ- 372
                                  +  SA   A  I   I ++IG+   T+     +  +  
Sbjct: 772  ----------------------EAPSAESEAAWIGDRIRSLIGSTAHTLVDAAPEGALPG 809

Query: 373  -----AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK-DLMALGR 426
                   DI VLVR       +  + +   +   + V   +         +   L A GR
Sbjct: 810  EGTFGPGDIAVLVR----VRALIPVLQRTLSRLGVPVAAPETEAFWADQRVSLILAAAGR 865

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            F+            + S +     D++                  + +      F     
Sbjct: 866  FVG-----------IGSAVAGGPGDEVNCPDKMLARGPLGVAAYLRESPPFDELF----- 909

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                        +     +       G    I+         L   L    R        
Sbjct: 910  ---------WQSAAFKALSKAYDTHGGWVGLIN------WVNLQSELETVRR-------- 946

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                                    +V++M++H AKGLE   VFL      +        +
Sbjct: 947  ---------------------RSEKVQVMSLHAAKGLEFRAVFLPALEDGILPFAGAATL 985

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                          +   ++  EE  RL YVG+TRA++ L + 
Sbjct: 986  SGHAD-------------------------REHMRTDLEEERRLFYVGITRAAEGLYLS 1019


>gi|227875764|ref|ZP_03993892.1| possible UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
 gi|227843706|gb|EEJ53887.1| possible UvrD/REP helicase [Mobiluncus mulieris ATCC 35243]
          Length = 569

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 67/330 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYE 138
             +       +  DL  +++ ++   +   +     +       +         L A YE
Sbjct: 187 ARLGLDPSRAQVRDLAGEIEWAKVSLLAPDEYVEAARAAGRMGVANLNPERIADLAAAYE 246

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           E K +   LDFED+++    +L   D    +   +     + ++DE QD S +Q  ++  
Sbjct: 247 EVKAEAQALDFEDILLVCAGML---DEREDVLRAVQARYQYFVVDEYQDVSPLQNYLLLR 303

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
                          R L  VGD  Q+IYSF GA P  +    R   +          ++
Sbjct: 304 WLGH----------RRDLAVVGDAAQTIYSFAGATPSFLTDFTRGYPE--------AKVV 345

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           EL   +RST  ++ + ++V +  ++A G                   GTVQL        
Sbjct: 346 ELTRDYRSTPQVVGLANQVLADAKDAAGRPL---------------GGTVQLV------- 383

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
             + +     W    D           A  +A    +++   T            KDI +
Sbjct: 384 SQREDGPDVQWFIAED-------DQTEASTVAKRSWHLMKQGT----------NPKDIAI 426

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           L R      L             +  V  D
Sbjct: 427 LFRTNSQAGLFGTEL----ARMGLPYVVKD 452



 Score = 44.5 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 35/127 (27%)

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              + + ++H+AKGLE   VFLV     +                               
Sbjct: 470 REAITLASLHSAKGLEWEAVFLVGASEGLLP----------------------------- 500

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                 +      +  EE  RL YVG+TRA   L I             +     +    
Sbjct: 501 ------INLSTTDAQIEEERRLTYVGITRARSLLTISYAKGKRPGASGEREACRFLAPFW 554

Query: 689 FHNDERV 695
                 V
Sbjct: 555 ARPQLDV 561


>gi|261337676|ref|ZP_05965560.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM
           20093]
 gi|270277115|gb|EFA22969.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM
           20093]
          Length = 1406

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 81/681 (11%), Positives = 174/681 (25%), Gaps = 132/681 (19%)

Query: 46  ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105
                  L +    + + E+     S               ++ +++  +   ++    +
Sbjct: 188 DQAFLDLLDELIGERELPEKIPNFKSVP---------KRTKKQTDQQYAEKVAQINAENE 238

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              + +       + + T    TL   L   Y +AK++  + +F D  I    L+ +   
Sbjct: 239 LIGEQKALQTAMDLREVTRKRETLLS-LVQLYAQAKQQRHMAEFGDFTIAAYQLVTQFPS 297

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP------RTLFAV 219
              I  +  +   H+L+DE QDTS  Q  ++ +L        +   +         + AV
Sbjct: 298 ---IGEQYRRRYTHVLLDEYQDTSTTQASLLAALFHPDSTPTHADEAGMQPAGTSAVGAV 354

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF- 278
           GD  QSIY++ GA P      +R            ++ + + ++ R+   +L   + +  
Sbjct: 355 GDPFQSIYAWRGASPGAFRMFQRDF-----GLPPTYAPLPITMTRRNAKLVLEAANALTM 409

Query: 279 ---SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
                P+                +      G + +   V    +                
Sbjct: 410 SLRKAPKRRSSSPMREVDVPELTTMATADRGVIGMQHYVTRGEEIDG------------- 456

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                        I   +                  QA  + +L R +          R 
Sbjct: 457 -------------IVRFVHEAQRKYGSVDPEMGVDAQAPHVALLFRSKTHM----DEYRA 499

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +SV    +  L D   ++D++AL        D    + +L +  ++ +  D+  
Sbjct: 500 ALESAGLSVQVVGKSALLDRAEVRDVLALLHAASDHADAAHMLRLLATARYHVNAHDLAA 559

Query: 456 ICTQRHETETVYEYIQKF---------------ANCGISKFQHVIKYIHELIHIAQF--- 497
                 +      Y                   A    +  +     + E  +       
Sbjct: 560 FAKLAEQLNMQQRYRLLCETGVVKPSGKGDDLDAAIAATALRDQKAAVREYRNKLPNSVF 619

Query: 498 ---CSPHDFFTLILGAKKGRQQFISRFGNEVID----------VLDEFLNFTLRNEQNSY 544
                 HD    +L      +Q  +   +               LDE +           
Sbjct: 620 LVDTLLHDDLAQLLTTTDISEQGRASLLSAAQALQAVKASLYGPLDEAIRAASEALNLDI 679

Query: 545 SSL-----------------------------------------QELISELEQ--YPPTI 561
             L                                         +  ++ +E        
Sbjct: 680 DMLVAAGLQGRDEHAASVQSPLRSLHNLVSTYVQEISNDQSVSLRGFLAWVESLKDAQEE 739

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                    +V +MT+H +KGLE   V +    +  F     + + I             
Sbjct: 740 TAQGVDAVCDVVLMTIHQSKGLEWDAVVIPSLEANTFPSNVGEHLKIETPDTLFGQTHAP 799

Query: 622 IPQSKSRNNIVSDLIKHLKKS 642
              +     +           
Sbjct: 800 GSGAVEDAPMWQPPEYQETAD 820



 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 74/598 (12%), Positives = 169/598 (28%), Gaps = 50/598 (8%)

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
            G+  +      +  + ++             +                  D     +   
Sbjct: 800  GSGAVEDAPMWQPPEYQETADTWLTMPQAVPVPVRVDAGILPQ-FPHDAADGSSDDEETG 858

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
              D +A  R + + E        LK  L                        ++++    
Sbjct: 859  AVDPLAALRRLDALETLDDE---LKGSLRQSRSAMAQAQGDADDANNWYLTQLEEYGRRH 915

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             +  + ++         A   +     T +   +          G+E    +  F     
Sbjct: 916  HADERRLMYVAITRAKKAVLLTASTLPTALTRDETLLS------GDERGKSVSNFFAEVE 969

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                  +++ Q+  S       T     +A    +R        G + P  F V   +Q 
Sbjct: 970  DVLTYHHANQQDWASTPTNLHETATAEDAAGGQTLRTP---QGLGFDLPQGFFVGDDAQT 1026

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
            + +  +      P  +DD    +  P   ++ +               E    L+   T+
Sbjct: 1027 WENVVVGDAWNAPLTDDDTAGTLPFP---TQLSPALAQRLAHSAQLVREAMATLHDADTQ 1083

Query: 658  ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE---W 714
              D +     +     K++ Q T         H+ +      L  +    E +       
Sbjct: 1084 GGDGVAAAGMAQPQESKEATQPTLQAQAQKILHDVDLSAAAVLRGAQLNKEILRKAQAVL 1143

Query: 715  STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
             T     T L+         +  +  + L  PI    +       + +    +  L++  
Sbjct: 1144 RTKRLTVTTLQHYAGHDNEAERLEFARSLVRPIPYVSSSSAAQAGTRLHNWAERFLKAGS 1203

Query: 775  SD---NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
             +   +Q       +H+ ++ +    +    + +  +      L      +++L    R+
Sbjct: 1204 GETLESQAAMI-NDMHEAMRNLDMREQQLEADSLEDHKDTAKALQAE---RDMLTWQQRI 1259

Query: 832  LENPMMTTAMSCDSYSEVSVSGKINCPKKD----------IIISGRIDQISI-------S 874
            +E+P     +     +E SV   +     +           I+ G+ID I         +
Sbjct: 1260 VESPWAARQLEA---AEQSVVMAVPKSAGESETDGAANELAIMPGKIDAIFRGRLDGSDT 1316

Query: 875  QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEP 930
            + +  I ++KT    P + E +    + QL  Y  +   +   P + +   L YVSE 
Sbjct: 1317 EHSFTIVDWKTGRR-PVKPEDVQEK-LRQLDFYRLLWSRAQDIPIERIDATLYYVSEA 1372


>gi|238060936|ref|ZP_04605645.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
 gi|237882747|gb|EEP71575.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149]
          Length = 1095

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 99/747 (13%), Positives = 201/747 (26%), Gaps = 135/747 (18%)

Query: 32  NKYVSLSMETGNPTILKKAQTLQQASQTQCIEE--RFSLLSSFFLTQKFTPQKNIITQEI 89
               S  + TG    L   + L    +    +       L     T+ F           
Sbjct: 62  RGEPSPRLLTGPEQDLIIRELLDVVGEEPDDDPVGWPEELRPALRTRAFAA--------- 112

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC---- 145
                 L++ L ++ +  +   +        +   A    A      Y            
Sbjct: 113 -----QLRDLLMRAAERGVGPVE--LARLGERLGRADWPAAARFLREYVAVLALRDVSNR 165

Query: 146 ---VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
                D  +L+               +     + + H+ +DE+ DT   Q +++  L   
Sbjct: 166 GSIAYDPAELVRAAT---GLLLDDPELLEAERRRLAHVYVDELADTDPAQLDLLAVLAG- 221

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                      ++L A  D   + Y+F G +P  V       +   T +G   + + L  
Sbjct: 222 ---------GGKSLVAFADPDSATYAFRGTDPAGVAAFPHRFR---TASGAPAAQVVLTT 269

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           S+R+   ++    ++                  R         GTVQ+     +  +   
Sbjct: 270 SYRAGPGLIAATRRLAGRLRG-------PAAHRRLCPLPDAPPGTVQVRTFRSATSE--- 319

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                                      A  ++  +    +        +    + VLVR 
Sbjct: 320 ---------------------------AAWLAQALRAAHLLD-----GVPWSRMAVLVRS 347

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE--DDLSFVCM 440
                 +  L R L      +VV  +   L    A+  L+ L R  L     D+ S V +
Sbjct: 348 T--ARQLPSLRRALHTAGVPTVVHGEDLPLHLQPAVAPLLLLLRCALEPARLDEESAVAL 405

Query: 441 LKSPLFNFSEDDIFKICT-----------QRHETETVYEYIQK------FANCGISKFQH 483
           L SPL         ++             +R   E + + ++                Q 
Sbjct: 406 LHSPLGGADPLAERRLRQGLRAIALAAGDRRPSGELIVDALRDPEELSGIDRRWAEPAQA 465

Query: 484 VIKYIHELIHIAQF--CSPHDFFTLILGAKKGRQQFI-----------------SRFGNE 524
           V   +      AQ    +  D    +  A    +++                        
Sbjct: 466 VAGLLAIAREAAQRPGATAEDVLWAVWDASGLAERWAGAITLGRAATGEHETARRWRAEA 525

Query: 525 VIDVLDE---FLNFTLRNEQNSYSSLQELISELEQYPP---TIKRAHSANHNEVRIMTVH 578
               LD      +   R       +  E+  +               +     VR++T H
Sbjct: 526 ADRDLDAVLVLFDAAARFADRLPGARTEVFLDHVLGQDLPADTLAPTADRGEAVRLLTAH 585

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGLE  +V +      V+    ++   +           + +   +   +    ++  
Sbjct: 586 AAKGLEWDLVAVAGVQEGVWPDLRLRGSLL------GSERLVDVLAGRDSGDGGRAVLIG 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
              +  +E  RL +V +TRA  +L++   ++ S     ++      +Y+        K  
Sbjct: 640 QTSALLDEERRLFHVAVTRARRRLLVSAVASASVGGDDHEEQPSRFLYELDPTRPPGKGD 699

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLE 725
                 +  +              P E
Sbjct: 700 GAPGHGDDPDGGPEGTPDGSSGRGPAE 726



 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 67/235 (28%), Gaps = 19/235 (8%)

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
             +     T   +         +                   D   +          D  
Sbjct: 770 PALVAELRTAVADPATPYHRRSAAAAELARLAAAGVPGAHPDDWWGLRGLSDDRPLVDEG 829

Query: 753 EPYILNPSTIDTKGKTNLESLLSDN-------QTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
           EP  + PS +++  + +L  LL  +            G ++H    ++       R   +
Sbjct: 830 EPVRVTPSGMESALRCSLRWLLERHGGSGPASAAQGVGNLVHAA-AMLAEDASADRSALL 888

Query: 806 T------SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
                        A+     E +     + +LL    +          E   + +++ P 
Sbjct: 889 EYVAARFDAIELAARWMVGPERERAEAMVDKLLR--WLAGNPRRLLAIEHEFAVRLDDPH 946

Query: 860 KDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           + + ++GR+D++ +     + + + KT          I      QL  Y+  ++ 
Sbjct: 947 RPVELTGRVDRLEVDADGRLVVVDLKTGKSTVVTEREIGEH--PQLGAYQAAVEA 999


>gi|229047955|ref|ZP_04193531.1| ATP-dependent DNA helicase rep [Bacillus cereus AH676]
 gi|228723412|gb|EEL74781.1| ATP-dependent DNA helicase rep [Bacillus cereus AH676]
          Length = 608

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 79/549 (14%), Positives = 172/549 (31%), Gaps = 139/549 (25%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A  +   YE+  KK    DF +++  + +L+ + +   +IR  ++     IL+DE QD  
Sbjct: 169 AAKVAYEYEQQLKKLKKTDFIEIVKYSRELINREE---YIRRCLESRFPWILVDEYQDFG 225

Query: 190 -LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
             +   ++  L+           +   +FAVGD  QSIY F+GA P+ +L          
Sbjct: 226 KPLHEMILSLLSL----------TNIKVFAVGDPDQSIYGFNGAIPEYLLELYD------ 269

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  S + L  ++RS  DI+  V  +    ++ +  +                    
Sbjct: 270 ---KPDISSVHLKTNYRSHQDIID-VSSIALNVDDREYKA-------------------- 305

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                            +    + F  +  E         +  TI           N + 
Sbjct: 306 ---------------GIEYDGNAEFHFITCEEELDTQYNYVVNTI---------IPNCQN 341

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           + I  ++I VLV+       ++ + +      +I    + +F       +  L +   ++
Sbjct: 342 QGIPLQEICVLVKDGNSIKNLSTVMKE----KQIPHYFS-KFEFAKSDVVLWLRSCALWL 396

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           ++     SF  ++   +     +          ET  +    QK     +   +   + +
Sbjct: 397 VNPT-SQSFTEIVNFWIQLLKNET---KHFSDEETLML----QKKLYTILEDSKKYAENL 448

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
           ++ +               L  +    Q ++     + +   ++L       Q+      
Sbjct: 449 NDWLTY-------------LEQELNLAQILNESVTYLDEN--KYLETLKNYAQSGS---- 489

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                 + Y  +         ++V + T H++KGLE  VV ++     VF          
Sbjct: 490 -----FQGYNLSQFSQIGKPKDQVTLSTRHSSKGLEFEVVIMLGMEKGVFP--------- 535

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                            +   E  R+ +V +TRA     + +  
Sbjct: 536 -------------------------YYKNERNSAKLNEERRVFFVCLTRAKRICYLLRSK 570

Query: 669 NTSNEKKSN 677
             + + ++ 
Sbjct: 571 KYTRKTRNG 579


>gi|94992156|ref|YP_600255.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
 gi|94545664|gb|ABF35711.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096]
          Length = 357

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 116/361 (32%), Gaps = 56/361 (15%)

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR------- 679
                     + L+ +T  E  RLLYV MTRA  ++     ++ S  +            
Sbjct: 1   METLPYQLNKQELRLATLSEQMRLLYVAMTRAEKKVYFIGKASKSKSQDITDPKKLGKLL 60

Query: 680 ------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH----HPENTP 723
                        W   + D F  ++    ++     +  +       T       +   
Sbjct: 61  PLALREQLLTFQDWLLAIADVFSTEDLYFDVRFIEDSDLTQESVGRLQTPQLLNPDDLKD 120

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN------ 777
             + ETI + +D  +   +L +  +  I+ P +  PS +    +  LE +  D       
Sbjct: 121 NRQSETIARALDMLEAVSQLNANYEAAIHLPTVRTPSQLKAAYEPLLEPIGVDIIEKSSR 180

Query: 778 ----------------QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                           +  + G  +H+L+QV+       ++  + +   +        + 
Sbjct: 181 SLSDFTLPHFSKKVKVEASHIGSALHQLMQVLPLSKPINQQTLLDAL--REIDSNEEVKT 238

Query: 822 KNLLLSITRLLENPMMTTAMS---CDSYSEVSVSG--KINCPKKDIIISGRIDQISISQQ 876
              L  I     +  +           Y E   +        +++ ++ G ID   +   
Sbjct: 239 ALDLKKIESFFCDTSLGQFFQTYQKHLYREAPFAILKVDPISQEEYVLRGIIDAYFLFDD 298

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP--KVFI 934
           +I + +YKT  +  ++   +   +  QL +Y + L  +Y        L+ +     ++  
Sbjct: 299 HIVLVDYKTDKY--KQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLMGGGKPEIVE 356

Query: 935 I 935
           +
Sbjct: 357 V 357


>gi|229818113|ref|ZP_04448395.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM
           20098]
 gi|229784717|gb|EEP20831.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM
           20098]
          Length = 1288

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 83/591 (14%), Positives = 163/591 (27%), Gaps = 117/591 (19%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAK------YLNAHYEEAKKKNCVLDFEDLII 154
            +S  + +    R        +  + +  A+       L   Y   K++  + +F D  I
Sbjct: 217 DESWAQKVASYQRDAHAACVYTCASLVQTAEQRNVMLDLVEAYAAEKRRLNMAEFSDFTI 276

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               L+ +      I  +  +  +H+L+DE QDTS  Q  +I +L               
Sbjct: 277 AAYQLVTRFPS---IGARYRKRFSHVLLDEYQDTSTTQAALIATLF---------RGEGT 324

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            + AVGD  QSIY++ GA P      +R       +   +     L ++ R+   +L   
Sbjct: 325 AVSAVGDPFQSIYAWRGASPGAFRMFQRDF-----HLPPERKPYSLSVTRRNAKLVLEAA 379

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +              T  +R   SR       ++    ++  D+  +           
Sbjct: 380 NNL--------------TMPLRGTPSRPSSSPMREVDVNELAPLDNAPSGTVGVLG---- 421

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                     + R     I+          +          + VL R +   PL      
Sbjct: 422 YETLGQEIDGVVRFCHEAIARNTHAGQSGEHK-------GSVAVLFRSKAKMPLFQQALE 474

Query: 395 FLKNDYKISVVGNDRFILTDHLAIK-------------DLMALGRFILSQEDDLSFVCM- 440
                  +S V      + +   ++             D  +L R + +    L    + 
Sbjct: 475 ----QSGLSAVAVGYSAMLERPEVRDILSLLRVACDHSDSASLMRLLATPRFGLGATALA 530

Query: 441 ----------LKSPLFNFSEDDIFKICTQRHETETV------------------------ 466
                     L+S         +      R + + +                        
Sbjct: 531 ALAGIANTLNLESQYRALVMAGLVPADAPRGQWDALVREHRDSVINSVFVADLLLRDDLP 590

Query: 467 --YEYIQKFANCGISKFQHVIKYIHELIH--------------IAQFCSPHDFFTLILGA 510
              E   +               +  +                 A            L  
Sbjct: 591 EQLERCSRIDEHDARTIIRAGAVLRTVCDAIGRPLSDVVRTATQALELDVDAVVAQALHG 650

Query: 511 KKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
                  ++R   E I D++D +L+     +  +          L          ++ + 
Sbjct: 651 DGTVNPTVARIPVEAIIDLVDTYLSEIAAGQAPTLRGFMAWTDTLRTIEDETSTLNADSG 710

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
            +V +MT+H +KGLE   V +V+ G  VF  K    + +        G   
Sbjct: 711 ADVELMTIHQSKGLEWDAVAVVELGEGVFPSKQGDSLAVKVDERHPGGWHD 761



 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 59/201 (29%), Gaps = 24/201 (11%)

Query: 770  LESLLSDNQTFNRGLIIHKLLQVI-----FTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                   +   + G   H   +              R   +                 ++
Sbjct: 1088 RPIPSVASPAASAGTRFHAWAERFMNAMHPEESGESRSGMLQELDKAVQACQSGDADSSV 1147

Query: 825  LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-------QN 877
            L    RL  +           ++E  +   I       +++G++D +           + 
Sbjct: 1148 LEWERRLASSAWAQRVP---VWAERQIVVSI-GDLNGQVVNGKLDAVFFGGLDPQDRTKR 1203

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEP--KVF 933
              I ++KT H      +      + QL +Y  +L +    P +++   L YVSE    + 
Sbjct: 1204 FTIVDWKTGHRPTSSEDTARK--LLQLDMYRLLLAEIENVPLEAIDATLYYVSEADESLR 1261

Query: 934  IIPQNK--LNKAFAEISTKIP 952
             +       N   AE+   +P
Sbjct: 1262 ELHAEMKPRNAIIAELGAGVP 1282



 Score = 41.4 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 47/171 (27%), Gaps = 10/171 (5%)

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             I   +            +   +++    ++   +    +  RL YV +TRA   L++ 
Sbjct: 818 ETIDDEVFGTLRAFDDEIGAMDPDSLYLTQVEEYGRRYHCDERRLAYVALTRARRDLLLT 877

Query: 666 KHSNTS----------NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
                             +KS    ++  V+DS      +           DE IA    
Sbjct: 878 YCQTGEEGRDPRVLGAKTRKSKPSVFWQEVHDSLRIHNDIATTPSNLPEGADEQIALPEG 937

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
               ++     +  +     E+       + +         +  S + +  
Sbjct: 938 YFVGDHAREYEDMVVGAAWLEEPETHDAQTSLPWPARLSREVGDSLLQSAK 988


>gi|298345209|ref|YP_003717896.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|304390769|ref|ZP_07372721.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|298235270|gb|ADI66402.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|304325652|gb|EFL92898.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 519

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 120/335 (35%), Gaps = 62/335 (18%)

Query: 69  LSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L +  +T        N+   ++   + +++       D            +   + L++ 
Sbjct: 126 LKATLVTAAGVRLGLNLGKAQVRALAGEIEWAKVSLIDPSHYALAARAAGREAVADLSTE 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A+ L   YE+AK    +LDFED+++    ++   D    +   I  +  + ++DE QD
Sbjct: 186 RVAE-LLDAYEDAKIAAEMLDFEDILLLCAGMM---DEREDVARTIRNQYRYFVVDEYQD 241

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            S +Q  ++ S               R L  VGD  Q+IYSF GA P+ +    +   + 
Sbjct: 242 VSPLQNYLLMSWLG----------RRRDLAVVGDAAQTIYSFAGATPEYLTEFTQTYPE- 290

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++EL   +RST  I+ + ++V +  +   G                   GT
Sbjct: 291 -------AKVVELIRDYRSTPQIVNLANQVLAQAKGTDGRPL---------------GGT 328

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V+L  Q       +  P+   + +  D           A+ IA  I +++          
Sbjct: 329 VRLVSQR------ETGPEVSWFVAPDDETE--------AKEIARRIQDLLAEG------- 367

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              +  + I VL R      L        +  + I
Sbjct: 368 ---LSPRQIAVLFRTNAQAALFAVALGAKRIPFVI 399



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 41/134 (30%), Gaps = 35/134 (26%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  V + ++H++KGLE  VVFL      +                           
Sbjct: 418 EDDEPGGVTLASLHSSKGLEWEVVFLAGASEGLLP------------------------- 452

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                     +      +T EE  RL YVG+TRA  +LI+       +     +     +
Sbjct: 453 ----------ISLAQTAATIEEERRLCYVGVTRARSRLIVSFAKARRDGSSQEREACRFL 502

Query: 685 VYDSFHNDERVKKI 698
                H    +++ 
Sbjct: 503 APFWPHRSATLRRS 516


>gi|255323799|ref|ZP_05364925.1| helicase, uvrd/rep family [Corynebacterium tuberculostearicum
           SK141]
 gi|255298979|gb|EET78270.1| helicase, uvrd/rep family [Corynebacterium tuberculostearicum
           SK141]
          Length = 1027

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 75/628 (11%), Positives = 171/628 (27%), Gaps = 102/628 (16%)

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN-DRFILTDHLAIKDLMALGRFI 428
            +  +DI V+VR   D   +    R       + V  +    +L +   +  ++   R +
Sbjct: 324 GVPWRDIAVIVRSTGDIGQM----RRTLLAAGVPVHISPTDVVLAEQRLVSAVLLALRAL 379

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET---------------VYEYIQKF 473
                +     +L  P+       + ++       ++               + ++  + 
Sbjct: 380 EEDLSNSELEELLTGPVGGADPVTLRRLIRGLRRWDSTTRGIDSLRGLLYGELPDFNGQL 439

Query: 474 ANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISRF------GNEVI 526
                S  + V   +      +A   S  +    +  A +   +  +        G++  
Sbjct: 440 TEREYSILERVRAVLSAGRDALASGDSVEEVLWAVWSATELDNRLQASALRGGATGSQAD 499

Query: 527 DVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH--SANHNEVRIMTVHTA 580
             LD      +      E+   SSL+  ++ + +           +A    V I+T H A
Sbjct: 500 RDLDAMMALFDAAGDYVERRPDSSLRAFLTHITEQELPTGVRDRRTAIPQAVEILTAHGA 559

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            G E   V +       +                D       P +               
Sbjct: 560 VGREWDTVIVAGAQEGSWPSLGETGSIFGQEDLIDLLDHDIDPDTPV----------SHV 609

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            S   E  RL +V  TR   +L+I    N   +  S    +         +       + 
Sbjct: 610 ASRLAEERRLFHVATTRHRQRLLIAAVENPEGDTVSEPSRFISEFAGRGVDVPGQAARRQ 669

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIK----------------------------- 731
                +   +  E     PE  P+   + ++                             
Sbjct: 670 AKRALRRTQLPRELGLDVPEPAPVSLRDGLEVDPLDVAVLSVPAFVAQLRRVVTNPESSE 729

Query: 732 ------------------QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-- 771
                                  ++         +  ++    L+PS ++      L+  
Sbjct: 730 VERKQAARQLARLAAADIPGAHPEQWWSARSVAAEVPLHTSGSLSPSRVEALLNCPLKAV 789

Query: 772 -----SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                   S  +   RG + H   + +    + ++   +     +  +  P  + +  L 
Sbjct: 790 LGNVAEDPSTEEHLLRGTLAHAFFEALGRGMDAEKAKLLVMEAFERIQDVPQWQLRFKLD 849

Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPK-KDIIISGRIDQISISQQN-IFIFEYK 884
             + LL+        S  +     V   +     +++ I G +D++   ++    + + K
Sbjct: 850 EFSTLLDRAREWACQSEVNQELAGVEIPVGVRVSEEVRIGGYMDRLLRDEEGNYLVVDLK 909

Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILK 912
           T    P + E        QL  Y+  L 
Sbjct: 910 TGRSKPAKKE---GEDHVQLMTYQLALA 934


>gi|38233332|ref|NP_939099.1| putative DNA helicase II [Corynebacterium diphtheriae NCTC 13129]
 gi|38199592|emb|CAE49248.1| Putative DNA helicase II [Corynebacterium diphtheriae]
          Length = 683

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 91/639 (14%), Positives = 163/639 (25%), Gaps = 185/639 (28%)

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           + SA I  +  Q+    ++DE QD + +Q  V+ +   +             +  VGD  
Sbjct: 200 ENSAAIAEEFRQQYRTFVVDEYQDVTPLQQRVLDAWLGE----------RDDVTVVGDAN 249

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IYSF GA P  +L   R             ++++L   +RST  I  + ++V      
Sbjct: 250 QTIYSFTGASPDYLLGFSRKYPH--------ATVVKLQRDYRSTPQITDLANRVIDQAVG 301

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                  + T +     R                                    + S   
Sbjct: 302 R-----IAGTRLELEGMRTAGPQP---------------------------EFQEFSDEP 329

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A  +A  I  ++             + A +I +L R    +           +D  I 
Sbjct: 330 AEAHAVALKIKQLLAQG----------VPASEIAILYRINAQSATFEQAL----DDAGIV 375

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
                         IK  M+       ++D      +           D+ +I       
Sbjct: 376 YQVRGGEEFFQRSEIKQAMSEIIRTTQRDDLPDARGV-----------DLERIVRA---- 420

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
             +            ++ +   + +  L  ++                            
Sbjct: 421 -ILAPLGLSKHEPEGARARERWQSLEALAELSLEIG------------------------ 455

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
                           +     +LQ L++ L Q               V + ++H AKGL
Sbjct: 456 ----------------QATPDLNLQGLLAALNQRASAKHPPTMQG---VTLASLHAAKGL 496

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   VFLV          H  K                                      
Sbjct: 497 EWDAVFLVGLVDGTLPISHAMK---------------------------------AGDHA 523

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            EE  RL YVG+TRA + L                              E  +  +    
Sbjct: 524 IEEERRLFYVGVTRAREILYCSWAK---------------------ARQEGGRATRKRTR 562

Query: 704 INKDEWIAYEWSTHHPENTPLEREE---TIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                    + S+  P +   +R     T      E+ + +    P   D      L   
Sbjct: 563 FLDSIVPELDVSSVPPRSKRRQRCRVCGTTLNSPAERIVGRCDQCPSGVDGEVFETLRKW 622

Query: 761 TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
             DT  + N+ + +           +H + + +    E 
Sbjct: 623 RADTARELNVPAYIVFTDAT-----LHAIAENLPQSAEE 656


>gi|306819037|ref|ZP_07452754.1| excision endonuclease subunit UvrD [Mobiluncus mulieris ATCC 35239]
 gi|304648230|gb|EFM45538.1| excision endonuclease subunit UvrD [Mobiluncus mulieris ATCC 35239]
          Length = 569

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 67/330 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYE 138
             +       +  DL  +++ ++   +   +     +       +         L A YE
Sbjct: 187 ARLGLDPSRAQVRDLAGEIEWAKVSLLAPDEYVEAARAAGRMGVANLNPERIADLAAAYE 246

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           E K +   LDFED+++    +L   D    +   +     + ++DE QD S +Q  ++  
Sbjct: 247 EVKAEAQALDFEDILLVCAGML---DEREDVLRAVQARYQYFVVDEYQDVSPLQNYLLLR 303

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
                          R L  VGD  Q+IYSF GA P  +    R   +          ++
Sbjct: 304 WLGH----------RRDLAVVGDAAQTIYSFAGATPSFLTDFTRGYPE--------AKVV 345

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           EL   +RST  ++ + ++V +  ++A G                   GTVQL        
Sbjct: 346 ELTRDYRSTPQVVGLANQVLADAKDAAGRPL---------------GGTVQLV------- 383

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
             + +     W    D           A  +A    +++   T            KDI +
Sbjct: 384 SQREDGPDVQWFIAED-------DQTEASTVAKRSWHLMKQGT----------NPKDIAI 426

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           L R      L             +  V  D
Sbjct: 427 LFRTNSQAGLFGTEL----ARMGLPYVVKD 452



 Score = 44.1 bits (102), Expect = 0.100,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 35/127 (27%)

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              + + ++H+AKGLE   VFLV     +                               
Sbjct: 470 REAITLASLHSAKGLEWEAVFLVGASEGLLP----------------------------- 500

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                 +      +  EE  RL YVG+TRA   L I             +     +    
Sbjct: 501 ------INLSTTDAQIEEERRLTYVGITRARSLLTISYAKGKRPGASGEREACRFLAPFW 554

Query: 689 FHNDERV 695
                 V
Sbjct: 555 ARPQLDV 561


>gi|186686894|ref|YP_001870087.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
 gi|186469246|gb|ACC85046.1| ATP-dependent DNA helicase, RecQ family [Nostoc punctiforme PCC
            73102]
          Length = 1675

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 81/583 (13%), Positives = 165/583 (28%), Gaps = 165/583 (28%)

Query: 97   KEKLKKSQDEFIKIR-DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
            +  +++ +     I  ++ +  ++F     +L L       Y         ++F+ L+I 
Sbjct: 1105 RNAVRELRLRLRNILGEQSSQIRVFTFHGLALALLGRTVGEYSRT----QAINFDRLLIE 1160

Query: 156  TNDLLKKRDVSAWI-------RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
              +LL K +    +       R ++  ++ +I +DE QD S  ++ +I+ ++        
Sbjct: 1161 ACELLAKGEEFEDVDDDIQARRIQLLGKLEYIFVDEYQDVSEKEYRLIKLISGLNESEDK 1220

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
              S    L  +GD+ Q+I+ F+GA  K +L+ K                + L  ++RST 
Sbjct: 1221 KKSVQINLCVIGDDDQNIFEFNGANTKYILQFKDEY---------NAKTLLLTANYRSTE 1271

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            +I+ V +++          + +    I +          V L                  
Sbjct: 1272 NIIEVANELIQKNPERCKQAPEEQIHINYERQGTKGQPVVAL------------------ 1313

Query: 329  WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                     + ++A   A  I   I   + + T             +I +L R   +   
Sbjct: 1314 ---------KFNNAFQQAGWIKDKIQTWLDSGT----------SPNEIAILARNWDELN- 1353

Query: 389  ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
               L R L     I                                 S   +  + +   
Sbjct: 1354 ---LIRLLLEKENI---------------------------------STCALKNNTISLV 1377

Query: 449  SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                   +     +  ++    ++         Q    +           +      + +
Sbjct: 1378 KNRSTHLLINALKKDYSLVLNPEESVQ------QRFEDFFERTGRSLTEPTVRTLINIAI 1431

Query: 509  GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
               + R          +   +DE L       +N  S L+                    
Sbjct: 1432 DLDRERGYGSENLALPIS--VDEILTAIFEFNENGESFLEN------------------- 1470

Query: 569  HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
               V + + H +KGLE   + L+  G  V +                             
Sbjct: 1471 -KSVLVTSFHGSKGLEFRKIILLGNGFLVNTGTIKS------------------------ 1505

Query: 629  NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                RL YV MTRA ++LI+C     +
Sbjct: 1506 ------------------ERRLFYVAMTRAKEELIVCSTQRNN 1530


>gi|323160037|gb|EFZ46001.1| exodeoxyribonuclease V beta chain domain protein [Escherichia coli
           E128010]
          Length = 542

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 112/355 (31%), Gaps = 32/355 (9%)

Query: 10  NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
           +E+    +  +              V         + + + +     S      ++ S  
Sbjct: 215 DETLASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRK--FNRSNQAKWIDKISAW 272

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
           +    T  +   +++            K   +  +    +  D+     +    L     
Sbjct: 273 AEE-ETNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRA 331

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +       K++   L F+D++   +  L+  +    +   I       +IDE QDT 
Sbjct: 332 LAEIRETVAREKRRRGELGFDDMLSRLDSALR-SESGEVLAAAIRTRFPVAMIDEFQDTD 390

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q+ + R +          H     L  +GD KQ+IY+F GA+    ++ +       T
Sbjct: 391 PQQYRIFRRIW--------HHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYT 442

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                     L  ++RS   ++  V+K+FS  ++A    E     ++          +V 
Sbjct: 443 ----------LDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVK----------SVG 482

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
             + +      +  P  + W    +S       S +A+  A  I + +       
Sbjct: 483 KNQALRFVFKGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGE 537


>gi|213022318|ref|ZP_03336765.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 338

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 116/377 (30%), Gaps = 54/377 (14%)

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
               Q KD  +L R    + +            +I    +          IKDL+A  R 
Sbjct: 1   MNKTQYKDYAILYRGNHQSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRV 56

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCG 477
           + + +DD +F+ ++ +P        + K+        ++++                   
Sbjct: 57  LTNPDDDSAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDS 116

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFT 536
           +++F H +  I  L       +  D    I       +   S    E  +  +++  ++ 
Sbjct: 117 LTRFTHWLGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWM 176

Query: 537 LRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E +   +L ++++         +       ++V++MT+H +KGLE   V++V 
Sbjct: 177 TEMLEGNELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFLYVYMVG 236

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                  H+                                       +   EE  RL Y
Sbjct: 237 MEEGFLPHQSSID-----------------------------------EDNIEEERRLAY 261

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           VG+TRA  +L            +  +      + +   +D   ++ +   S  +      
Sbjct: 262 VGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEERMQKGQ 321

Query: 713 EWSTHHPENTPLEREET 729
               +       +R ++
Sbjct: 322 SHLANLKAMMAAKRAKS 338


>gi|291447588|ref|ZP_06586978.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350535|gb|EFE77439.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 634

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/547 (13%), Positives = 160/547 (29%), Gaps = 41/547 (7%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L      Q +  + Y    +       L  A  L+  S  +       
Sbjct: 92  AAVELRDRMAARLGAARGPQATTFHSYCYALVRAHQDADL-FADPLRLLSGPEQDVTVRE 150

Query: 68  LLSS-FFLTQKF--------TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+    L ++           +  + T+    +   +      ++   + +        
Sbjct: 151 LLAGQLDLEKEGLAQVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLGPDALADF 205

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++     T A    A Y +      VLD+ +L+     L ++ +V+A     +    +
Sbjct: 206 ARRTGRPDWTAAAQFLAEYLDILDAQGVLDYAELVHRAVLLAERPEVAAE----LAGRYD 261

Query: 179 HILIDEVQDTSLIQWEVIRSLTED-----------FFVGKNTHSSPRTLFAVGDEKQSIY 227
            + +DE QDT   Q  ++ +L  +                    + RTL A GD  QSIY
Sbjct: 262 AVYVDEYQDTDPAQVRLLHALAGNQGRAPEYAQPTEKARGAGARAGRTLIAFGDPDQSIY 321

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA+   +L      ++     G    +  L  S RS A +L     +       +  
Sbjct: 322 TFRGADVNGILDFPDTFRR---ADGSPAPVGVLTTSRRSGAGLLAATRLLTRRMPLTRLP 378

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           ++         + R G       +    ++ D+  +  + +         + +       
Sbjct: 379 ADTVRAHRELHAVRDGGRVETYTYPTASTELDNIADLLRRAHLEDGVPWQEMAVLVRAGG 438

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
           R    +   + +  +        +  +    +         +         D        
Sbjct: 439 RSLPAVRRALTSAGVPLEVDGDDLPLRHEPAVAPLLTALRAVATAALQCLPDLPDLPDLP 498

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
           DR  L D        A      S  D  + + +L SPL +    D+ ++     + E   
Sbjct: 499 DRSGLPDLPEGDPGEA---GAPSWLDTETALTLLTSPLGSMDAADLRRLGRALRDEER-- 553

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
               +            +     L         +      LGA   + + + + G    +
Sbjct: 554 AAGIRIPAPSDELLARALAEPERL---VTHDPAYAHGAQRLGALLRKARELLQGGGTAEE 610

Query: 528 VLDEFLN 534
            L    N
Sbjct: 611 ALWTLWN 617


>gi|309807505|ref|ZP_07701464.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
 gi|308169255|gb|EFO71314.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
          Length = 491

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 84/216 (38%), Gaps = 25/216 (11%)

Query: 83  NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 286 SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 339

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           K+KN ++DF D+      +L     ++ + R     + + IL+DE QD + +Q ++I+ +
Sbjct: 340 KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 399

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
            E              LF VGD KQSIY F  A+P   L++             +   I 
Sbjct: 400 KEK---------GKNNLFMVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERII 445

Query: 260 LPLSFRSTADILTVVDKVFSIP--ENAQGLSEDSTT 293
           L  +FRS+ ++  +V+ +F     EN  G++     
Sbjct: 446 LSDNFRSSKNVTQIVNNIFDALLTENFGGINYQKER 481


>gi|37523211|ref|NP_926588.1| hypothetical protein gll3642 [Gloeobacter violaceus PCC 7421]
 gi|35214214|dbj|BAC91583.1| gll3642 [Gloeobacter violaceus PCC 7421]
          Length = 713

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 88/591 (14%), Positives = 164/591 (27%), Gaps = 66/591 (11%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R     +       L  A  +   Y+    +   LD++DL     DL+++    A +R +
Sbjct: 176 RLPPQAIEPVQAGFLPWALGIYRSYQAELLRAGKLDYDDLAWRAVDLIERD---AGVRGE 232

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHG 231
           ++   +++  DE QD+S +Q  ++  L+               L  VGD  QSI S F  
Sbjct: 233 VEGWYDYLFEDESQDSSPLQERLLDLLSA----------RSGNLVRVGDPNQSIMSTFTT 282

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS-------IPENA 284
           AEP+   R  R+              + L  S RS   I+ + + +          P   
Sbjct: 283 AEPRFFRRFCRL-----------SRRVVLEESSRSAPMIIALANALVDWAASDHPNPSLR 331

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
             L      T     +  G       +E V    + +             + P+ S A +
Sbjct: 332 GALVRQHIRTASSGPANPGDSEAALHFEVVCGPPEEELASVARCAAEALAARPEHSFAVL 391

Query: 345 LA-RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
           +    +   +   +                    ++ R R         +  ++    I 
Sbjct: 392 VGTNELGAQVLRQLQRFAGVRTLDLLRSNPTQRELIDRLRVMAEFFAQPSSPVRLAAAIE 451

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
               D   L           L R              L  P+F         +     E 
Sbjct: 452 -SLADWAGLGRRQVAGAQPRLLRIA---------PEKLLFPVFG----SEIALPVAAEER 497

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
               +     A   ++        +          + +     I        Q     G 
Sbjct: 498 AGWQKICSTLAGWLLATRSPRADSLR-----LVVQTLYRSSAEIYLGHYVVDQLERTLGE 552

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
                  E  +        S ++L                        + + T H AKGL
Sbjct: 553 RPAVDWQEVADEIRAILDGSLNNLPSEAFHFA-----------PEPGAITVATAHRAKGL 601

Query: 584 ESPVVFLVDTGSQVFS---HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           E   VFL    +  +          ++ +  L+        +  S       +   +   
Sbjct: 602 EWDEVFLTGISAYEYPVLREDRPVGLYFLDGLDMRAEALSELRASARLRRGHTSATEQAF 661

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                E  RLLYVG+TRA  +L++   +     ++      + ++      
Sbjct: 662 LDLAAEKLRLLYVGITRARRRLVLSVATRDLFGREQRPSRLFQVLQCFDSR 712


>gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
 gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens E str. JGS1987]
          Length = 876

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 123/367 (33%), Gaps = 74/367 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   + +  LDF DLII T +L K       +   +  +  +I IDEVQDTS+I
Sbjct: 207 ELVTLYDSRLRDDHALDFNDLIILTKELFKDE----KVVRALKNKFKYINIDEVQDTSII 262

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           ++ +I  + E              +   GD  Q+IYS+ G++P+ +  +    +++    
Sbjct: 263 EYSIIEKIFE-----------GNNVLICGDFFQTIYSWRGSDPEMIFNK---FKEKYNPV 308

Query: 252 GQKFSIIELPLSFRSTADI----LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 I    ++R+T ++    L  ++  FS                            
Sbjct: 309 E-----IVFSKNYRATKNLNKASLEFLNNAFS--------------------------SK 337

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V    +     +S+ + ++           +       AR I   ++ +           
Sbjct: 338 VSTMYKDGILAESKEDGEKILLK-------ETRGLREEARFIFDYVNKLCKNGEDL---- 386

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK--ISVVGNDRFILTDHLAIKDLMALG 425
                 K + VL R       ++     +          +  D+F       +KD++A  
Sbjct: 387 ------KRVCVLTRDNNYNIGLSEELYQIGGYEGADFEFILVDQFKFFRRQEVKDILAFL 440

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQH 483
           + I ++ D LS   ++           +  I     +     + +YI         KF  
Sbjct: 441 KLIANRYDSLSLKRIVNRLPTGIGMRTLEAIESYKYKEVGIRLADYIDPLVLKYGEKFSL 500

Query: 484 VIKYIHE 490
           +I    +
Sbjct: 501 LINEFEK 507



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 40/200 (20%)

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
               +  +  F  + K ++EL  IA+   P++    ++     +  +      E ++ L 
Sbjct: 684 MALMSKHLKAFTAISKKLNELFKIAESKRPYELVACVMNGFNIKSMYAGDENKEKLNRLR 743

Query: 531 EFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           +        +  S  +   L+       L          +      + I+TVH AKGLE 
Sbjct: 744 DLYALFRDLDDKSKGNRDALLDIIRITGLSNGELESLIINRTKKPRIPIITVHQAKGLEF 803

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VFL    +  F                                        +K+    
Sbjct: 804 DTVFLAGIQNNTFPS-----------------------------------YMSIKEGNLA 828

Query: 646 EYNRLLYVGMTRASDQLIIC 665
           E  R+ YV +TRA  +L+I 
Sbjct: 829 EEKRVFYVAITRAKKRLVIT 848


>gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
 gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens D str. JGS1721]
          Length = 876

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 123/367 (33%), Gaps = 74/367 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   + +  LDF DLII T +L K       +   +  +  +I IDEVQDTS+I
Sbjct: 207 ELVTLYDSKLRDDHALDFNDLIILTKELFKDE----KVVRALKNKFKYINIDEVQDTSII 262

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           ++ +I  L E              +   GD  Q+IYS+ G++P+ +  +    +++    
Sbjct: 263 EYSIIEKLFE-----------GNNVLICGDFFQTIYSWRGSDPEMIFNK---FKEKYNPV 308

Query: 252 GQKFSIIELPLSFRSTADI----LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 I    ++R+T ++    L  ++  FS                            
Sbjct: 309 E-----IVFSKNYRATKNLNKASLEFLNNAFS--------------------------SK 337

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V    +     +S+ + ++           +       AR I   ++ +           
Sbjct: 338 VSTMYKDGILSESKEDGEKILLK-------ETRGLREEARFIFDYVNKLCKNGEDL---- 386

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK--ISVVGNDRFILTDHLAIKDLMALG 425
                 K + VL R       ++     +          +  D+F       +KD++A  
Sbjct: 387 ------KRVCVLTRDNNYNIGLSEELYQIGGYEGADFEFILVDQFKFFRRQEVKDILAFL 440

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQH 483
           + I ++ D LS   ++           +  I     +     + +YI         KF  
Sbjct: 441 KLIANRYDSLSLKRIVNRLPTGIGMRTLEAIESYKYKEVGIRLADYIDPLVLEYGEKFSL 500

Query: 484 VIKYIHE 490
           +I    +
Sbjct: 501 LINAFEK 507



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 40/215 (18%)

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           +     +            +  +  F  + K ++EL  IA+   P++    ++     + 
Sbjct: 669 VRAINEKIIPTSMERMALMSKHLKAFTAISKKLNELFKIAESKRPYELVACVMNGFNIKS 728

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHN 570
            +      E ++ L +        +  S  +   L+       L          +     
Sbjct: 729 MYAGDENKEKLNRLRDLYALFRDLDDKSKGNRDALLDIIRITGLSNGELESLIINRTKKP 788

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + I+TVH AKGLE   VFL    +  F                                
Sbjct: 789 RIPIITVHQAKGLEFDTVFLAGIQNNTFPS------------------------------ 818

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                   +K+    E  R+ YV +TRA  +L+I 
Sbjct: 819 -----YMSIKEGNLAEEKRVFYVAITRAKKRLVIT 848


>gi|325846882|ref|ZP_08169739.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481124|gb|EGC84168.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 860

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 85/562 (15%), Positives = 170/562 (30%), Gaps = 119/562 (21%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           K+  S+ A  +LA  +   + +   +N +++++ ++ N  DLL+          KI   I
Sbjct: 161 KLRNSSNAKDSLALEVYLKWADFLDRNNLINYQLILKNFYDLLEDPIFGK----KIRDRI 216

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
           + ++IDE QDT+ IQ E+  +L              + L   GD+ Q++YSF GA P+ +
Sbjct: 217 DFVIIDEYQDTNKIQEEIAFNLC-----------KGKNLMVFGDDDQALYSFRGASPRNL 265

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
               +  +K+           EL +++RS  +I+       S     +  + D       
Sbjct: 266 REFDKACKKK---MKADAKFYELDINYRSNQEIIDK-----SRDFLVKSQAFDEEKIKNL 317

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
           +++   +                             +      + +     I   +  + 
Sbjct: 318 QANEKNK-----------------------------NENSVVRARANNYENIEKIVKFL- 347

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                      + I    I  L              +    ++ I+V+     +      
Sbjct: 348 ----------NKKINLNQIAFLFPSLN--SDYPKSLQTYFENHGINVLNKSSKLFFKR-- 393

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            +++      +LS            SP       D +K   + +  + +           
Sbjct: 394 -REIRLCLYVLLSIFSKKPKKLTGSSP-------DKYKWVQETNFKKYIGGIFDNKEFVK 445

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF--ISRFGNEVID--VLDEFL 533
             K    I    E + +AQ  S  D      G    R+         N++ +   + +F 
Sbjct: 446 DEKLNAFIN--EEKLSLAQNKSYTDILYRAFGLDIFRKILGQKMDDLNQIRELSNIGKFT 503

Query: 534 NFTLRNEQNSYSSLQELISELEQY-----------PPTIKRAHSANHNEVRIMTVHTAKG 582
           +           ++      ++               +         + V   T+H AKG
Sbjct: 504 SILSDFINLQGDNINYYEKSVDLIYGYIFYLFKNSSISEFENFDVPKDSVIFSTIHQAKG 563

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE  VVF+     +                             K R      +    K  
Sbjct: 564 LEYDVVFVSSLYDKP---------------------------RKDREAFSPQIDVKNKSD 596

Query: 643 TQEEYNRLLYVGMTRASDQLII 664
             + Y R  Y   TRA + L++
Sbjct: 597 YLKNYYRKYYTAFTRAKNLLVL 618



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 39/185 (21%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                +  + G  +H L + +  L +                          L  I   +
Sbjct: 682 RKEKTRALDFGSKVHSLSEYLTNLKKENLS----------------------LEKINDFI 719

Query: 833 -ENPMMTTAMSCDSYSEVSV---SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
            EN    + +      +  +      I   +KD I+ G ID +  +     I + KT   
Sbjct: 720 RENKEFQSPIENFVNRDFPIKNSEMNIKLDRKDYILQGNIDIVLENGS---IIDIKTGKI 776

Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIPQNKLN-KAFAE 946
                     ++  QL  Y  +L   Y NK +    L ++ E ++  + ++  + +    
Sbjct: 777 NN------LSSYKNQLLTYYNLL--VYNNKKVDRMFLYFIEEDELIEVEKSNFDMEYIDR 828

Query: 947 ISTKI 951
           I   I
Sbjct: 829 IGKNI 833


>gi|253827592|ref|ZP_04870477.1| putative helicase [Helicobacter canadensis MIT 98-5491]
 gi|253510998|gb|EES89657.1| putative helicase [Helicobacter canadensis MIT 98-5491]
          Length = 919

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 91/583 (15%), Positives = 192/583 (32%), Gaps = 46/583 (7%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
           K++     F            ME       +  ++  ++         FS  +S      
Sbjct: 178 KEMLDKELFVYEAPKGDKEQVMEYAYRLQREYKKSKGESKSKTSNPMDFSDFNSLLHKG- 236

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K  +T+E         +     +D F  +++      +   +     L + +   Y
Sbjct: 237 ----KTWLTKEKITDFKGFGKIPFDERD-FEGLKEALLEVYLDDESQYLKNLYE-IFQVY 290

Query: 138 EEAK----KKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            +AK    +++  L F  +     +LL KK     ++ +++D  I+HILIDE QDTS++Q
Sbjct: 291 LQAKEKYYQQSNTLSFNAVTSKVYELLLKKNFDKEFLYFRLDSTISHILIDEFQDTSILQ 350

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+++ + ++   GK      R+ F VGD KQSIY F G  P          +  A    
Sbjct: 351 YEILKPMIDEIKSGKGVKEFLRSFFYVGDIKQSIYRFRGGNPNL-------FKIAADGMK 403

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           Q+     L  ++RS  +++  V++VFS   +     E ++         I +    ++ +
Sbjct: 404 QE----SLQKNYRSAKNLVEFVNEVFSNKIDGFVSQEANSHYEGFVRVVINEADKQEISK 459

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASIL-----------ARRI-AYTISNMIGTD 360
            +    +     ++ +   + +    E +  +            A+ +    +  +I   
Sbjct: 460 CLRELLELGAKEEEIAILLFDNDWVVELAEFLETDGFKVVMDTSAKLVFHNEVRALIEFL 519

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLIT-------FLTRFLKNDYKISVVGNDRFILT 413
               +   +  +   +L+ + K                +   +   +KIS +   +F+  
Sbjct: 520 KYLDSKNPQFCEEFFMLLGLEKESLDRYFEILENPPAVILLQVMQFFKISSLSAKKFLEY 579

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYI 470
                     L +    Q D +S  C    L +   +   +    +    ++  + Y  +
Sbjct: 580 ALGFASVGELLEKVESLQADIVSSECSGIRLMTIHKSKGLEFNHVLVIDDNKARSRYNNV 639

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF-TLILGAKKGRQQFISRFGNEVIDVL 529
                    + Q V +  ++L                IL  K  + Q           + 
Sbjct: 640 FFEFKENGVEIQRVFQKSNDLRKSLDKTYQKAILKEEILKEKDLKNQLYVALTRAKNTMH 699

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
              L+   R +     SLQ    +                  V
Sbjct: 700 IMLLSEKGRFDSLGLESLQRGDLKSALEEIKDAINLPKKEERV 742



 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 66/550 (12%), Positives = 167/550 (30%), Gaps = 75/550 (13%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-FNFSEDDIFKICTQRHE 462
           V  N         A        R ++++ D       L+  L     E++I  +      
Sbjct: 424 VFSNKIDGFVSQEANSHYEGFVRVVINEADKQEISKCLRELLELGAKEEEIAILLFDNDW 483

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD-----FFTLILGAKKGRQQF 517
              + E+++      +      + + +E+  + +F    D     F           ++ 
Sbjct: 484 VVELAEFLETDGFKVVMDTSAKLVFHNEVRALIEFLKYLDSKNPQFCEEFFMLLGLEKES 543

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----------LEQYPPTIKRAHSA 567
           + R+   + +     L   ++  + S  S ++ +            LE+         S+
Sbjct: 544 LDRYFEILENPPAVILLQVMQFFKISSLSAKKFLEYALGFASVGELLEKVESLQADIVSS 603

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + +R+MT+H +KGLE   V ++D       + ++        +             KS
Sbjct: 604 ECSGIRLMTIHKSKGLEFNHVLVIDDNKARSRYNNVFFEFKENGVEIQRVFQKSNDLRKS 663

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
            +      I   +   +++    LYV +TRA + + I   S           +       
Sbjct: 664 LDKTYQKAILKEEILKEKDLKNQLYVALTRAKNTMHIMLLSEKGRFDSLGLES------- 716

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                           + + +  +         N P + E    +    ++  + L +  
Sbjct: 717 ----------------LQRGDLKSALEEIKDAINLPKKEERVFFEEASYKRSLEALGTQ- 759

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                                  E      Q    G+ +H +++             +  
Sbjct: 760 ---------------KKMQVIQKEVQEGKIQGIYYGVALHFVMEQKIKNNLDDLV-LLEI 803

Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISG 866
            C K   L   +  +N++    ++L+N      ++      E+     ++  ++  +   
Sbjct: 804 LCNKMGFLMERESLENVIKHCKKILKNSHFIEILTKGKVKCEIPF---LSNGRQKRL--- 857

Query: 867 RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             D + I +   F+ +YK+             +++ Q+  Y + +++    K     + Y
Sbjct: 858 --DLLVIGENEAFVIDYKSG--------MQRESYMTQVLEYMQSVEEIL-QKPTRGFVFY 906

Query: 927 VSE-PKVFII 935
                ++  +
Sbjct: 907 TEGEGRLVEV 916


>gi|307700285|ref|ZP_07637325.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
 gi|307614496|gb|EFN93725.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris
           FB024-16]
          Length = 555

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 67/330 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYE 138
             +       +  DL  +++ ++   +   +     +       +         L A YE
Sbjct: 173 ARLGLDPSRAQVRDLAGEIEWAKVSLLAPDEYVEAARAAGRMGVANLNPERIADLAAAYE 232

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           E K +   LDFED+++    +L   D    +   +     + ++DE QD S +Q  ++  
Sbjct: 233 EVKAEAQALDFEDILLVCAGML---DEREDVLRAVQARYQYFVVDEYQDVSPLQNYLLLR 289

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
                          R L  VGD  Q+IYSF GA P  +    R   +          ++
Sbjct: 290 WLGH----------RRDLAVVGDAAQTIYSFAGATPSFLTDFTRGYPE--------AKVV 331

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           EL   +RST  ++ + ++V +  ++A G                   GTVQL        
Sbjct: 332 ELTRDYRSTPQVVGLANQVLADAKDAAGRPL---------------GGTVQLV------- 369

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
             + +     W    D           A  +A    +++   T            KDI +
Sbjct: 370 SQREDGPDVQWFIAED-------DQTEASTVAKRSWHLMKQGT----------NPKDIAI 412

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           L R      L             +  V  D
Sbjct: 413 LFRTNSQAGLFGTEL----ARMGLPYVVKD 438



 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 35/127 (27%)

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              + + ++H+AKGLE   VFLV     +                               
Sbjct: 456 REAITLASLHSAKGLEWEAVFLVGASEGLLP----------------------------- 486

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                 +      +  EE  RL YVG+TRA   L I             +     +    
Sbjct: 487 ------INLSTTDAQIEEERRLTYVGITRARSLLTISYAKGKRPGASGEREACRFLAPFW 540

Query: 689 FHNDERV 695
                 V
Sbjct: 541 ARPQLDV 547


>gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13]
 gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str.
           13]
          Length = 870

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 124/367 (33%), Gaps = 74/367 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   + +  LDF DLII T +L K       +   +  + N+I IDEVQDTS+I
Sbjct: 201 ELVTLYDSKLRDDHALDFNDLIILTKELFKDE----KVVRALKNKFNYINIDEVQDTSII 256

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           ++ +I  L E              +   GD  Q+IYS+ G++P+ +  +    +++    
Sbjct: 257 EYSIIEKLFE-----------GNNVLICGDFFQTIYSWRGSDPEMIFNK---FKEKYNPV 302

Query: 252 GQKFSIIELPLSFRSTADI----LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 I    ++R+T ++    L  ++  FS                            
Sbjct: 303 E-----IVFSKNYRATKNLNKASLEFLNNAFS--------------------------SK 331

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V    +     +S+ + ++           +       AR I   ++ +           
Sbjct: 332 VSTMYKDGILAESKEDGEKILLK-------ETRGLREEARFIFDYVNKLCEKGEDL---- 380

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK--ISVVGNDRFILTDHLAIKDLMALG 425
                 K + VL R       ++     +          +  D+F       +KD++A  
Sbjct: 381 ------KRVCVLTRDNNYNIGLSEELYQIGGYEGADFEFILVDQFKFFRRQEVKDILAFL 434

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQH 483
           + I ++ D LS   ++           +  I     +     + +YI         KF  
Sbjct: 435 KLIANRYDSLSLKRIVNRLPTGIGMRTLEAIESYKYKEVGIRLADYIDPLVLEYGEKFSL 494

Query: 484 VIKYIHE 490
           +I    +
Sbjct: 495 LINEFEK 501



 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 64/214 (29%), Gaps = 43/214 (20%)

Query: 460 RHETETVYEYIQKFANCGISKFQHVIK---YIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
           R   E + E   +         +        ++EL  IA+   P++    ++     +  
Sbjct: 664 RAINEKIRETSMERMTLMSKHLKAFTAISKKLNELFQIAESKRPYELVACVMNGFNIKSM 723

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNE 571
           +      E ++ L +        +  S  +   L+       L          +      
Sbjct: 724 YAGDENKEKLNRLRDLYALFRDLDDKSKGNRDALLDIIRITGLSNGELESLIINRTKKPR 783

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           + I+TVH AKGLE   VFL    +  F                                 
Sbjct: 784 IPIITVHQAKGLEFDTVFLAGIQNNTFPS------------------------------- 812

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                  +K+    E  R+ YV +TRA  +L+I 
Sbjct: 813 ----YMSIKEGNLAEEKRVFYVAITRAKKRLVIT 842


>gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
 gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           perfringens CPE str. F4969]
          Length = 876

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 123/367 (33%), Gaps = 74/367 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+   +++  LDF DLII T +L K       +   +  +  +I IDEVQDTS+I
Sbjct: 207 ELVTLYDSKLREDHALDFNDLIILTKELFKDE----KVVRALKNKFKYINIDEVQDTSII 262

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           ++ +I  + E              +   GD  Q+IYS+ G++P+ +  +    +++    
Sbjct: 263 EYSIIEKIFE-----------GNNVLICGDFFQTIYSWRGSDPEMIFNK---FKEKYNPV 308

Query: 252 GQKFSIIELPLSFRSTADI----LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 I    ++R+T ++    L  ++  FS                            
Sbjct: 309 E-----IVFSKNYRATKNLNKASLEFLNNAFS--------------------------SK 337

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V    +     +S+ + ++           +       A  I   ++ +           
Sbjct: 338 VSTMYKDGILAESKEDGEKILLK-------ETRGLREEASFIFDYVNKLCEKGEDL---- 386

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK--ISVVGNDRFILTDHLAIKDLMALG 425
                 K + VL R       ++     +          +  D+F       +KD++A  
Sbjct: 387 ------KRVCVLTRDNNYNIGLSEELYQIGGYEGADFEFILVDQFKFFRRQEVKDILAFL 440

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQH 483
           + I ++ D LS   ++           +  I     +     + +YI         KF  
Sbjct: 441 KLIANRYDSLSLKRIVNRLPTGIGMRTLEAIESYKYKEVGIRLADYIDPLVLEYGEKFSL 500

Query: 484 VIKYIHE 490
           +I    +
Sbjct: 501 LINEFEK 507



 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 40/200 (20%)

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
               +  +  F  + K ++EL  IA+   P++    ++     +  +      E ++ L 
Sbjct: 684 MALMSKHLKAFTAISKKLNELFQIAESKRPYELVACVMNGFNIKSMYAGDENKEKLNRLR 743

Query: 531 EFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           +        +  S  +   L+       L          +      + I+TVH AKGLE 
Sbjct: 744 DLYALFRDLDDKSKGNRDALLDIIRITGLSNGELESLIINRTKKPRIPIITVHQAKGLEF 803

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VFL    +  F                                        +K+    
Sbjct: 804 DTVFLTGIQNNTFPS-----------------------------------YMSIKEGNLA 828

Query: 646 EYNRLLYVGMTRASDQLIIC 665
           E  R+ YV +TRA  +L+I 
Sbjct: 829 EEKRVFYVAITRAKKRLVIT 848


>gi|313105868|ref|ZP_07792131.1| hypothetical protein PA39016_000110166 [Pseudomonas aeruginosa
           39016]
 gi|310878633|gb|EFQ37227.1| hypothetical protein PA39016_000110166 [Pseudomonas aeruginosa
           39016]
          Length = 738

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 105/817 (12%), Positives = 220/817 (26%), Gaps = 170/817 (20%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-LKKAQTLQQASQTQCIEERFSLLS 70
               + +D+ P  +  V   N+  +LS            A  ++  +          + +
Sbjct: 16  RVRHLLRDISP-AHIAVVMFNRDAALSFRRRFEQAVQGTAPEIRTFNSMGNKIVNRLVQN 74

Query: 71  SFFLTQKFTPQKNIITQEINKKS---------------PDLKEKLKKSQDEFIKIRDRFN 115
                 +  P+ ++ T+                      +L +                 
Sbjct: 75  GLLPEARIEPKDHLRTKIAKDAFTQVFKAINGSNVTPDKELIDGFIAFLLLVKSSTHSPE 134

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKID 174
                +               YEE + +  V  FED + +   L L++     ++     
Sbjct: 135 EVFETRQYGPITQGYVEAFRLYEEHRAQLKVRFFEDQLYDPVKLMLRQPATQRYV----Q 190

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             ++H+++DE QD + IQ  +++ L  D             +  VGDE Q+IY + GAEP
Sbjct: 191 NRVDHLIVDEAQDMNGIQIALLKILAGD----------RAKVMLVGDEDQAIYDWRGAEP 240

Query: 235 KRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
             ++R  ++   +         +   LP +FR    +     +V S   N       S  
Sbjct: 241 DYLIRGFEQDFPE--------ATRYTLPHTFRFGHMLSIAASQVISCNTNRNPKISISAE 292

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                         +      +                                      
Sbjct: 293 GTPRT--------RIHCLPLALG------------------------------------- 307

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +       +      ++ +DI VLVR    +  +        +   I      R  L 
Sbjct: 308 --LADLGEHVAERLTSGLKLQDIAVLVRTYDLSVTLELDL----HQRGIPYHVYGRPPLM 361

Query: 414 DHLAIKDLMALGRF-------ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETET 465
               I  L+ + +        + + +       ++  P     +  I ++      + E 
Sbjct: 362 RIPEISALLGVLQLASGRWKTLDANQLRYVIKSLMYRPTLYLDKAAINRVVELVVRQPEC 421

Query: 466 VYEYIQKFANCGISKFQ--HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           + E I+         +Q   +      L  +A    P D    +L       +F      
Sbjct: 422 LVEAIRSTITLQTKDYQANQIRDRADLLEILATATDPQDKVLTVLDRYLLATEFERNIEK 481

Query: 524 E---------VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           +         V+  +  F     R+E +  + L  +   ++                V I
Sbjct: 482 QSPTADQAAAVMANVQAFRLIASRHEGSIDAFLDSIDPLIDSSAMEPPTTP-----HVWI 536

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            ++H AKG +   VF+       F                                    
Sbjct: 537 SSIHRAKGAQWSRVFVPGVVRSGFP----------------------------------- 561

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
               L     E   RL YV +TRA D++ I   ++   ++   +    +   ++      
Sbjct: 562 -RDDLSADEIEAERRLFYVAITRAVDEVFIAHPNDLEFQRSLERPDITETHPETSSVSRF 620

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
           + ++ +  + +    +         E    E   T        K  +    P        
Sbjct: 621 LWEMDIALARHAGAAVEEGRFAALGEVDRPEVANTYFATFPFSKDWRYAKRPQPP----- 675

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGL-IIHKLL 790
              +P++                    +G  +IH + 
Sbjct: 676 ---SPASAGANHDVV---------GAAKGTRVIHAIF 700


>gi|218682571|ref|ZP_03530172.1| ATP-dependent UvrD family DNA helicase [Rhizobium etli CIAT 894]
          Length = 415

 Score =  130 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 2/178 (1%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           L+ R GL+  ++   I    WPLP      +  Y+SL+   G     + A  L+ A + +
Sbjct: 238 LRQRLGLAAGDTESRIAAQYWPLPQLSGGMLELYLSLADHKGGAKAQEVAYGLRLAGRER 297

Query: 61  CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
               R   L   FLT K  P+ +     + +  ++P L + +  ++      RDR    +
Sbjct: 298 DEARRAQFLEKIFLTAKGEPKADSQFFVKAMLAEAPQLADAIAAARTHVAASRDRLKLMR 357

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
           M+ +T A+L LA  LN  YEE KK+   LDFEDLI  T DLL K  V  W+ YK+D+ 
Sbjct: 358 MYGATHAALVLADRLNRDYEELKKQRSQLDFEDLITRTADLLTKSGVGPWVHYKLDRG 415


>gi|308235631|ref|ZP_07666368.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14018]
 gi|311114379|ref|YP_003985600.1| DNA helicase II [Gardnerella vaginalis ATCC 14019]
 gi|310945873|gb|ADP38577.1| DNA helicase II [Gardnerella vaginalis ATCC 14019]
          Length = 527

 Score =  130 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 88/271 (32%), Gaps = 63/271 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K    ++DF DL++ T  +L+    +A    +I   I  + +DE QD S +
Sbjct: 180 EVYKAYEIEKNTRNLIDFNDLLLLTCHILRSFPNAA---KQIRSLIGWVTVDEYQDVSPL 236

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E++     D           R +  VGD  Q+IYSF GA    +L           + 
Sbjct: 237 QHELLVLWLGD----------NRNICVVGDPAQTIYSFAGASSYDLLEFPNEFAPIYAD- 285

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L   +RST  I+ + ++V S     +           +   +    G  ++ 
Sbjct: 286 ------ISLNTDYRSTERIVGLANRVLSQSACRRD----------YLKLKSNIRGGARVS 329

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + + +    +                        A  +A  IS  + +            
Sbjct: 330 KSIYNTDYDE------------------------ALSVAQQISKAVKSGDAL-------- 357

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              D  +L R      +       L   + +
Sbjct: 358 -PTDFAILTRTNVQQNMFCRTLGSLGLHFSV 387


>gi|90569545|gb|ABD94616.1| UvrD/REP family helicase [Pseudomonas aeruginosa]
          Length = 760

 Score =  130 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 105/817 (12%), Positives = 220/817 (26%), Gaps = 170/817 (20%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-LKKAQTLQQASQTQCIEERFSLLS 70
               + +D+ P  +  V   N+  +LS            A  ++  +          + +
Sbjct: 38  RVRHLLRDISP-AHIAVVMFNRDAALSFRRRFEQAVQGTAPEIRTFNSMGNKIVNRLVQN 96

Query: 71  SFFLTQKFTPQKNIITQEINKKS---------------PDLKEKLKKSQDEFIKIRDRFN 115
                 +  P+ ++ T+                      +L +                 
Sbjct: 97  GLLPEARIEPKDHLRTKIAKDAFTQVFKAINGSNVTPDKELIDGFIAFLLLVKSSTHSPE 156

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKID 174
                +               YEE + +  V  FED + +   L L++     ++     
Sbjct: 157 EVFETRQYGPITQGYVEAFRLYEEHRAQLKVRFFEDQLYDPVKLMLRQPATQRYV----Q 212

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             ++H+++DE QD + IQ  +++ L  D             +  VGDE Q+IY + GAEP
Sbjct: 213 NRVDHLIVDEAQDMNGIQIALLKILAGD----------RAKVMLVGDEDQAIYDWRGAEP 262

Query: 235 KRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
             ++R  ++   +         +   LP +FR    +     +V S   N       S  
Sbjct: 263 DYLIRGFEQDFPE--------ATRYTLPHTFRFGHMLSIAASQVISCNTNRNPKISISAE 314

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                         +      +                                      
Sbjct: 315 GTPRT--------RIHCLPLALG------------------------------------- 329

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +       +      ++ +DI VLVR    +  +        +   I      R  L 
Sbjct: 330 --LADLGEHVAERLTSGLKLQDIAVLVRTYDLSVTLELDL----HQRGIPYHVYGRPPLM 383

Query: 414 DHLAIKDLMALGRF-------ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETET 465
               I  L+ + +        + + +       ++  P     +  I ++      + E 
Sbjct: 384 RIPEISALLGVLQLASGRWKTLDANQLRYVIKSLMYRPTLYLDKAAINRVVELVVRQPEC 443

Query: 466 VYEYIQKFANCGISKFQ--HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           + E I+         +Q   +      L  +A    P D    +L       +F      
Sbjct: 444 LVEAIRSTITLQTKDYQANQIRDRADLLEILATATDPQDKVLTVLDRYLLATEFERNIEK 503

Query: 524 E---------VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           +         V+  +  F     R+E +  + L  +   ++                V I
Sbjct: 504 QSPTADQAAAVMANVQAFRLIASRHEGSIDAFLDSIDPLIDSSAMEPPTTP-----HVWI 558

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            ++H AKG +   VF+       F                                    
Sbjct: 559 SSIHRAKGAQWSRVFVPGVVRSGFP----------------------------------- 583

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
               L     E   RL YV +TRA D++ I   ++   ++   +    +   ++      
Sbjct: 584 -RDDLSADEIEAERRLFYVAITRAVDEVFIAHPNDLEFQRSLERPDITETHPETSSVSRF 642

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
           + ++ +  + +    +         E    E   T        K  +    P        
Sbjct: 643 LWEMDIALARHAGAAVEEGRFAALGEVDRPEVANTYFATFPFSKDWRYAKRPQPP----- 697

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGL-IIHKLL 790
              +P++                    +G  +IH + 
Sbjct: 698 ---SPASAGANHDVV---------GAAKGTRVIHAIF 722


>gi|315656454|ref|ZP_07909343.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315493013|gb|EFU82615.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 519

 Score =  130 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 119/335 (35%), Gaps = 62/335 (18%)

Query: 69  LSSFFLTQKFTPQK-NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           L +  +T        N+   ++   + +++       D            +   +  ++ 
Sbjct: 126 LKATLVTAAGVRLGLNLGKAQVRALAGEIEWAKVSLIDPSHYALAARAAGREAVADFSTE 185

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A+ L   YE+AK    +LDFED+++    ++   D    +   I  +  + ++DE QD
Sbjct: 186 RVAE-LLDAYEDAKIAAEMLDFEDILLLCAGMM---DEREDVARTIRNQYRYFVVDEYQD 241

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            S +Q  ++ S               R L  VGD  Q+IYSF GA P+ +    +   + 
Sbjct: 242 VSPLQNYLLMSWLG----------RRRDLAVVGDAAQTIYSFAGATPEYLTEFTQTYPE- 290

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                    ++EL   +RST  I+ + ++V +  +   G                   GT
Sbjct: 291 -------AKVVELIRDYRSTPQIVNLANQVLAQAKGTDGRPL---------------GGT 328

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V+L  Q       +  P+   + +  D           A+ IA  I +++          
Sbjct: 329 VRLVSQR------ETGPEVSWFVAPDDETE--------AKEIARRIQDLLAEG------- 367

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              +  + I VL R      L        +  + I
Sbjct: 368 ---LSPRQIAVLFRTNAQAALFAVALGAKRIPFVI 399



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 35/134 (26%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  V + ++H+AKGLE  VVFL      +                           
Sbjct: 418 EDDEPGGVTLASLHSAKGLEWEVVFLAGASEGLLP------------------------- 452

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                     +      +T EE  RL YVG+TRA  +LI+       +     +     +
Sbjct: 453 ----------ISLAQTAATIEEERRLCYVGVTRARSRLIVSFAKARRDGSSQEREACRFL 502

Query: 685 VYDSFHNDERVKKI 698
                H    +++ 
Sbjct: 503 APFWPHRSATLRRS 516


>gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
 gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum
           DSM 5476]
          Length = 865

 Score =  130 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/433 (16%), Positives = 126/433 (29%), Gaps = 95/433 (21%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            L     L   Y+    +   LDF DL+   +++L   + +A I          I IDEV
Sbjct: 192 LLKFGAKLLKLYDRTLAERHALDFNDLLGKASEILSNPEYAASIAES----YKFIHIDEV 247

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK-RVLREKRIN 244
           QDTSLI++ +I+ +                L   GD  Q+IY + G++P+      +R  
Sbjct: 248 QDTSLIEYGIIQKIFG-----------SSRLMLCGDYFQTIYQWRGSKPRDIFSGFERDY 296

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        +    ++RST  +L            AQ  S      I H + R   
Sbjct: 297 ---------DPVRVVFDQNYRSTQVLLNASYAFLKASFPAQVESVYGGEIIAHAAQRGE- 346

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                                         +     S +  A  I   I  +        
Sbjct: 347 ----------------------------LITCKTARSVAEEAAWIYREIKRL-------- 370

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK--ISVVGNDRFILTDHLAIKDLM 422
                      + VL R  +    ++     L  +    I  +  D+F       +KD++
Sbjct: 371 ----NPPDRSRVAVLSRNNQHNQKLSEEFLKLNLEQDQWIDFLLADQFKFFRTKEVKDVL 426

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
           A  + ++++ DD S   +L           I K+  + H    +             +  
Sbjct: 427 AFLKLLVNKYDDTSLERILLGYAKGVGVQTIRKLECKEHRALGI-------------RLS 473

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILG---------AKKGRQQFISRFGNEVIDVLDEFL 533
             ++          +  P+D  T  L             G               +DE  
Sbjct: 474 DFVQ-----RDTLLYGDPYDGLTRALYGKNVVVFDVESTGTDTSSDEIIQIAAVRIDETG 528

Query: 534 NFTLRNEQNSYSS 546
                 EQ  + S
Sbjct: 529 RVLRSFEQLLHPS 541



 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 69/244 (28%), Gaps = 39/244 (15%)

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           +    H+     +  +        +F  +   I  L   ++          I+ A   R 
Sbjct: 658 LHLTAHKLLPTLQQRKAVYERYQGRFDKLSSTIESLRRASEELPLSSLLDRIMEAM--RM 715

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR--AHSANHNEVR 573
           + +     + +  L E        E  S   L  +++ LE    +        A    V 
Sbjct: 716 KQLCEGEEKRLRNLAELREIAREMEGLSPGRLDCILAFLETAALSSTNLDRMLALKPRVP 775

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           I+TVH AKG E   VFL       F                                   
Sbjct: 776 ILTVHQAKGAEFDTVFLAGLQDDQFPS--------------------------------- 802

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                      +E  R  YV MTRA  +L +         KK   R   D+  +   +D+
Sbjct: 803 --YFAQLSGDLDEERRTFYVAMTRAKQRLYLSCALEVDGRKKKPSRFLEDIPAEYIQSDQ 860

Query: 694 RVKK 697
             +K
Sbjct: 861 TAEK 864


>gi|145294942|ref|YP_001137763.1| hypothetical protein cgR_0888 [Corynebacterium glutamicum R]
 gi|140844862|dbj|BAF53861.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 678

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 93/668 (13%), Positives = 173/668 (25%), Gaps = 178/668 (26%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A+        Q        L            +    +   +K  D+  +++ 
Sbjct: 81  ARTFHAAARKQLLYFWPQVAGNLPWRLLDNKFQLVGRAVRGARLESQTEKVRDILGEIEW 140

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII-------N 155
           ++   I   +++      ++  A       +   YE  K        E +++       +
Sbjct: 141 AKASLIT-PEQYPDRLGTRTPPAPAEKIAEVYQRYENMKAT-----PEGMLLDFDDLLLH 194

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
           T   L+       +  +  Q+    ++DE QD + +Q  V+ +   D             
Sbjct: 195 TAGALENSPA---VAEEFRQQYRSFVVDEYQDVTPLQQRVLDAWLGD----------RDD 241

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD  Q+IYSF GA P+ +L   R           + ++++L   +RST  +  + +
Sbjct: 242 LTVVGDANQTIYSFTGATPEYLLNFSRKYP--------EATVVKLQRDYRSTPQVTALAN 293

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            V             + T +  +  RI                                 
Sbjct: 294 TVIGQARGR-----VAGTRLELQGMRIAGPEP---------------------------E 321

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                     AR +A  I  ++             +QA +I VL R    + +       
Sbjct: 322 FSAFDDEPTEAREVAGRILTLLKNG----------VQASEIAVLYRINAQSAVFEQAL-- 369

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
              D  I               I       R  LSQ    S   + +S L   ++  +  
Sbjct: 370 --ADAGIVYQVRGGEGFFTRPEI-------RQALSQLIRTSQRDVDESDLVRLTQRTLVP 420

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           +     E     E             +   + ++                          
Sbjct: 421 LGLSSEEPSGAQE-------------RERWQSLN-------------------------- 441

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                            ++      + +       +    +     K   +     V + 
Sbjct: 442 ---------------ALVDLVKDLVKATPDLDLTGLLLKLRERQEAKHPPTVEG--VTLA 484

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H AKGLE   VFLV          H  K                              
Sbjct: 485 SLHAAKGLEWDAVFLVGLVDSTLPISHAIKSG---------------------------- 516

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                    EE  RL YVG+TRA + L             K   +  + D +     ++ 
Sbjct: 517 -----DEAIEEERRLFYVGVTRAREHLHCSWALARQEGGRKSRKRSRFLDGIVVEMASES 571

Query: 694 RVKKIKLT 701
              +    
Sbjct: 572 GTPRSNRP 579


>gi|304569684|ref|YP_009677.2| ATP-dependent DNA helicase UvrD [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|311232732|gb|ADP85586.1| UvrD/REP helicase [Desulfovibrio vulgaris RCH1]
          Length = 1127

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 176/659 (26%), Gaps = 178/659 (27%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             + +  + + + +       LS+  G+   L +  TL            F          
Sbjct: 586  ARRIVAVTFTRRAATEMDERLSVTLGDGAPLPRTDTLHAL--------AFEFWHRSSAQP 637

Query: 77   KFTPQKNIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 +    +   + +PD   + L+++ DE    R+R     +             L  
Sbjct: 638  PVLLSEEAARRVFAEANPDATAQTLREAWDELAVCRERMQVCSLA---------LAPLLD 688

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y + K    + D+ DL+    + +                  H+L+DE+QD S +Q  +
Sbjct: 689  RYVQQKAAWNLADYTDLLEFWLEQIHN--------GLYVPPWRHVLVDEIQDLSPLQLAL 740

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +R+L                 F +GD  QSIY F GA                       
Sbjct: 741  VRALL---------PPGGEGFFGIGDPDQSIYGFRGAHGDVKGALDEAWP--------GL 783

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            S++ L  ++RS+A +L     +         L          R                 
Sbjct: 784  SVVTLRANYRSSASVLDAAGALMEGRSACGRLRAVRDLPADIRLF--------------- 828

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT--DTIFSNGKKRVIQ- 372
                                  +  SA   A  I   I ++IG+   T+     +  +  
Sbjct: 829  ----------------------EAPSAESEAAWIGDRIRSLIGSTAHTLVDAAPEGALPG 866

Query: 373  -----AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK-DLMALGR 426
                   DI VLVR       +  + +   +   + V   +         +   L A GR
Sbjct: 867  EGTFGPGDIAVLVR----VRALIPVLQRTLSRLGVPVAAPETEAFWADQRVSLILAAAGR 922

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            F+            + S +     D++                  + +      F     
Sbjct: 923  FVG-----------IGSAVAGGPGDEVNCPDKMLARGPLGVAAYLRESPPFDELF----- 966

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                        +     +       G    I+         L   L    R        
Sbjct: 967  ---------WQSAAFKALSKAYDTHGGWVGLIN------WVNLQSELETVRR-------- 1003

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                                    +V++M++H AKGLE   VFL      +        +
Sbjct: 1004 ---------------------RSEKVQVMSLHAAKGLEFRAVFLPALEDGILPFAGAATL 1042

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                          +   ++  EE  RL YVG+TRA++ L + 
Sbjct: 1043 SGHAD-------------------------REHMRTDLEEERRLFYVGITRAAEGLYLS 1076


>gi|120603526|ref|YP_967926.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
 gi|120563755|gb|ABM29499.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4]
          Length = 1127

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/659 (14%), Positives = 176/659 (26%), Gaps = 178/659 (27%)

Query: 17   YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
             + +  + + + +       LS+  G+   L +  TL            F          
Sbjct: 586  ARRIVAVTFTRRAATEMDERLSVTLGDGAPLPRTDTLHAL--------AFEFWHRSSAQP 637

Query: 77   KFTPQKNIITQEINKKSPDL-KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                 +    +   + +PD   + L+++ DE    R+R     +             L  
Sbjct: 638  PVLLSEEAARRVFAEANPDATAQTLREAWDELAVCRERMQVCSLA---------LAPLLD 688

Query: 136  HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
             Y + K    + D+ DL+    + +                  H+L+DE+QD S +Q  +
Sbjct: 689  RYVQQKAAWNLADYTDLLEFWLEQIHN--------GLYVPPWRHVLVDEIQDLSPLQLAL 740

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            +R+L                 F +GD  QSIY F GA                       
Sbjct: 741  VRALL---------PPGGEGFFGIGDPDQSIYGFRGAHGDVKGALDEAWP--------GL 783

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            S++ L  ++RS+A +L     +         L          R                 
Sbjct: 784  SVVTLRANYRSSASVLDAAGALMEGRSACGRLRAVRDLPADIRLF--------------- 828

Query: 316  SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT--DTIFSNGKKRVIQ- 372
                                  +  SA   A  I   I ++IG+   T+     +  +  
Sbjct: 829  ----------------------EAPSAESEAAWIGDRIRSLIGSTAHTLVDAAPEGALPG 866

Query: 373  -----AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK-DLMALGR 426
                   DI VLVR       +  + +   +   + V   +         +   L A GR
Sbjct: 867  EGTFGPGDIAVLVR----VRALIPVLQRTLSRLGVPVAAPETEAFWADQRVSLILAAAGR 922

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            F+            + S +     D++                  + +      F     
Sbjct: 923  FVG-----------IGSAVAGGPGDEVNCPDKMLARGPLGVAAYLRESPPFDELF----- 966

Query: 487  YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
                        +     +       G    I+         L   L    R        
Sbjct: 967  ---------WQSAAFKALSKAYDTHGGWVGLIN------WVNLQSELETVRR-------- 1003

Query: 547  LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                                    +V++M++H AKGLE   VFL      +        +
Sbjct: 1004 ---------------------RSEKVQVMSLHAAKGLEFRAVFLPALEDGILPFAGAATL 1042

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                          +   ++  EE  RL YVG+TRA++ L + 
Sbjct: 1043 SGHAD-------------------------REHMRTDLEEERRLFYVGITRAAEGLYLS 1076


>gi|228930959|ref|ZP_04093917.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228828678|gb|EEM74356.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 743

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/621 (13%), Positives = 181/621 (29%), Gaps = 125/621 (20%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY----LNAHYEEAKKKNCVLDFEDLI 153
           E++          R+R N  + +   +  + L +     + A+Y + +K    +DFEDL 
Sbjct: 177 EEVSSIVSYISAARNRLNPDEFYHPDMEDVGLTRENIKYVIANYAQMRKDYKCMDFEDLQ 236

Query: 154 INTNDLLKKRDVS-AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
                     +     +   I    + I+IDE QD S IQ+E+ +               
Sbjct: 237 ELLYKFACNPETRNPHVTNFISNRYDRIIIDEFQDVSEIQYEIFK----------VYAKG 286

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
            + +  +GD+ QSIYS+ G+    +    +           K  I +L  ++R  +++L 
Sbjct: 287 CKQVTVIGDDDQSIYSWRGSNIDIIT---KRFPADF-----KPVINKLSRNYRCPSNVLN 338

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
            +    ++ EN              ++SR G                             
Sbjct: 339 PIINSITMNENRYEK--------PLKASREGG---------------------------- 362

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +     S   +AR I   I   +                  + +L R       ++  
Sbjct: 363 TLNCYSYGSTIEMARSIQEQIMEDVNNGMT-------------VAILGRTNPSLLPLSVF 409

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
             F                       +    L    ++  + +     LK    + S   
Sbjct: 410 LDFQDKFN---YAIRGTLYDLKRPKFRKYWQLAYLFMNNYEKMHEN--LKVIAKDLSNYQ 464

Query: 453 IFKICTQ-RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
           +       + + +T++ +               + +I+     +      +         
Sbjct: 465 LKNFVNALKIQGQTIFNFPMNSLRNISEDLASFVIHIN-----STADDEVEKLKATFEFV 519

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
           K R    +    E    + E L   +  E     ++ + I E+      +     +    
Sbjct: 520 KYRALDANDEYTEETVSIIELLEMII--ECGDVKTMDDFIYEINYRNTRLHSRADSRDTT 577

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +++ TVH  KG E+  V++    +++F                                 
Sbjct: 578 IQLTTVHDFKGKEADSVYIWKDTNKLFPSSRS---------------------------- 609

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                     +  EE  R+ Y+  TRA ++  I     +     S       +V  ++  
Sbjct: 610 --------ADTEFEEERRIHYIAGTRAKEKSTILTIRGSE----SPFIAEMGIVPVAYFG 657

Query: 692 DERVKKIKLTNSINKDEWIAY 712
           +     I+   +   D+ IA 
Sbjct: 658 EGASGSIRQNANQIMDDEIAE 678


>gi|75759108|ref|ZP_00739214.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228904436|ref|ZP_04068531.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
 gi|74493435|gb|EAO56545.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228855521|gb|EEN00086.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222]
          Length = 732

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/621 (13%), Positives = 181/621 (29%), Gaps = 125/621 (20%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY----LNAHYEEAKKKNCVLDFEDLI 153
           E++          R+R N  + +   +  + L +     + A+Y + +K    +DFEDL 
Sbjct: 166 EEVSSIVSYISAARNRLNPDEFYHPDMEDVGLTRENIKYVIANYAQMRKDYKCMDFEDLQ 225

Query: 154 INTNDLLKKRDVS-AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
                     +     +   I    + I+IDE QD S IQ+E+ +               
Sbjct: 226 ELLYKFACNPETRNPHVTNFISNRYDRIIIDEFQDVSEIQYEIFK----------VYAKG 275

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
            + +  +GD+ QSIYS+ G+    +    +           K  I +L  ++R  +++L 
Sbjct: 276 CKQVTVIGDDDQSIYSWRGSNIDIIT---KRFPADF-----KPVINKLSRNYRCPSNVLN 327

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
            +    ++ EN              ++SR G                             
Sbjct: 328 PIINSITMNENRYEK--------PLKASREGG---------------------------- 351

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +     S   +AR I   I   +                  + +L R       ++  
Sbjct: 352 TLNCYSYGSTIEMARSIQEQIMEDVNNGMT-------------VAILGRTNPSLLPLSVF 398

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
             F                       +    L    ++  + +     LK    + S   
Sbjct: 399 LDFQDKFN---YAIRGTLYDLKRPKFRKYWQLAYLFMNNYEKMHEN--LKVIAKDLSNYQ 453

Query: 453 IFKICTQ-RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
           +       + + +T++ +               + +I+     +      +         
Sbjct: 454 LKNFVNALKIQGQTIFNFPMNSLRNISEDLASFVIHIN-----STADDEVEKLKATFEFV 508

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
           K R    +    E    + E L   +  E     ++ + I E+      +     +    
Sbjct: 509 KYRALDANDEYTEETVSIIELLEMII--ECGDVKTMDDFIYEINYRNTRLHSRADSRDTT 566

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +++ TVH  KG E+  V++    +++F                                 
Sbjct: 567 IQLTTVHDFKGKEADSVYIWKDTNKLFPSSRS---------------------------- 598

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                     +  EE  R+ Y+  TRA ++  I     +     S       +V  ++  
Sbjct: 599 --------ADTEFEEERRIHYIAGTRAKEKSTILTIRGSE----SPFIAEMGIVPVAYFG 646

Query: 692 DERVKKIKLTNSINKDEWIAY 712
           +     I+   +   D+ IA 
Sbjct: 647 EGASGSIRQNANQIMDDEIAE 667


>gi|50954632|ref|YP_061920.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951114|gb|AAT88815.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 570

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/555 (13%), Positives = 149/555 (26%), Gaps = 170/555 (30%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L+  YEE K +   LDFED+++    ++   +V   +  ++ ++    ++DE QD S +
Sbjct: 174 DLHRTYEELKDERKQLDFEDVLLACAGMI---EVEPSVAMQVREQYRFFVVDEYQDVSPL 230

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q +++R                + L  VGD  Q+IYSF GA    +L   R         
Sbjct: 231 QHQLLRLWLG----------PRKDLCVVGDASQTIYSFAGARSDYLLDFGRE-------- 272

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            Q  +++ L  ++RST  ++   + +                         G+ G + L 
Sbjct: 273 HQGATVVRLEQNYRSTPAVIRTANNLMR-----------------------GRAGALTLH 309

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +      P             +       AR +              +       
Sbjct: 310 AVAEPRPGDDVPPS-----------AEFEDDRAEARAVVE----------AIAAELAAGA 348

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + + I +L R    +  +         D  IS          D   ++  +   R     
Sbjct: 349 RPEGIAILYRVNVQSAALEQAL----GDRGISYTVRGARRFFDLPEVRQAIMTLRAASMA 404

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             D      +   L                                    +   + ++ +
Sbjct: 405 ATDEPLFKSVSDVLRTLG--------------------WSVQPPEARGAVRDRWESLNAI 444

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
           + +         F           + ++R   +   +L                      
Sbjct: 445 MGLVDDVPAGTSFRR------FTDELLARQAGQHEPILAA-------------------- 478

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                               V + T+H AKGLE   V+L+     +    +         
Sbjct: 479 --------------------VTLGTLHAAKGLEWDSVYLIGLSEGLVPISYASSF----- 513

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                            +E  RLLYVG+TRA  +L +     ++
Sbjct: 514 ------------------------------EQIDEERRLLYVGITRARKRLRLSWAQRSA 543

Query: 672 NEKKSNQRTWYDMVY 686
              +   R     + 
Sbjct: 544 QPGRPVLRQASRFLA 558


>gi|309388624|gb|ADO76504.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228]
          Length = 805

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 22/187 (11%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                + F+        A  L  +YE+  ++N  +DF D+I     +LK+         K
Sbjct: 372 EALLTRGFEKQYYFAKSAAMLYQYYEDYLEENRKIDFNDMIYKAAAILKEN------LRK 425

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +  +H+L+DE QD SL   E+I+   E+         S   LF VGD+ QSIYSF G+
Sbjct: 426 YQKRYDHLLVDEFQDVSLGHIEIIKQFFEE--------DSKVKLFCVGDDWQSIYSFQGS 477

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +PK  +  ++   K A           L  ++R    +L   + +    ++       + 
Sbjct: 478 DPKYFIDFEKYFGKAAKTY--------LVDNYRCPKSVLEAGNSLIDNNKHKIEKKVKAN 529

Query: 293 TTIRHRS 299
                  
Sbjct: 530 NPAETIP 536



 Score = 41.8 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 26/139 (18%)

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           FL       +    S      +        +R      N V I +VH +KG E+  V L+
Sbjct: 584 FLESIKEKLKEDEISYIGKGDDYYNAESNSQRP----ENAVSIFSVHQSKGREADNVILL 639

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                                        +   +  + + + + +K  K +  EE  RL 
Sbjct: 640 HMVKDDN----------------------FSFPTVDKESKLIEPVKLNKINHLEEERRLF 677

Query: 652 YVGMTRASDQLIICKHSNT 670
           YV +TRAS  L I   SN 
Sbjct: 678 YVAITRASKNLDILTQSNN 696


>gi|227486916|ref|ZP_03917232.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092990|gb|EEI28302.1| helicase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 1025

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/602 (12%), Positives = 168/602 (27%), Gaps = 68/602 (11%)

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLA 417
              +      R I  +D++V+ R     P      +       + V   +   +L +   
Sbjct: 341 ARELREVHLIRDIPWEDMVVITRSLSQIP----ALQRALATADVPVHIDSTDVVLVEQSI 396

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY------EYIQ 471
           ++ ++     ++    +   + +   P+       + +I  +  E   V           
Sbjct: 397 VQAMLQAVDIVMGNGTEEDIIELATGPIGGADPITLRRIQREIGELGPVVRGAAGVAEDA 456

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR---QQFISRFG----NE 524
           +      S   H+   I       +     +     +    G    + + +  G     +
Sbjct: 457 RLGEQAESVLTHLSAVIQTGREAVERGDSLELILWSIWEATGLSTSKMYTALRGGPAAAQ 516

Query: 525 VIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVH 578
               L+   E  +      E+    SL+  I  L        ++         V ++T H
Sbjct: 517 ANRDLNAMMELFDVAGDYVERVKQPSLEGFIEHLTSQDLPTGVRERQVVAPKAVALLTAH 576

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            A   E   V L       +    +           D              N+  D    
Sbjct: 577 GAIDDEWNTVILAGADDDSWPSLGLTGTIFDQEELVDL----------IDENVDPDAYID 626

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---------VYDSF 689
             +    E  RL  +  +RA+D L+I   +    +    Q + +           V    
Sbjct: 627 RLRERLHEEQRLFSLVTSRATDTLVITAINPAEEDSPLPQPSRFVRKLEEDETFSVSTVV 686

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----- 744
             DE   K            +    S+   +    +    +      +  P   +     
Sbjct: 687 ETDELAVKSSRPFIAELRRALTSADSSDEEKEEAADLLAMLADAGFSEAEPTNWWGLAGP 746

Query: 745 --SPIKNDINEPYILNPSTIDTKGKTNLES------LLSDNQTFNRGLIIHKLLQVIFTL 796
             +    +  +P  L+PS +++  +  L+           +     G ++H L +   TL
Sbjct: 747 TDAQPLREPGQPATLSPSQVESGLQCPLKMVLNSVTPTESSSALREGNLLHALAEASVTL 806

Query: 797 --PEHKRKNFITSYCTKNA--KLWPAKEYKNLLLSITRLLEN--PMMTTAMSCDSYSEVS 850
              E   K             +  P  + K        ++      MT         E+ 
Sbjct: 807 QQDEETWKEAEQLVLDAYLSSRTVPPWKEKADEEEFVEVMNATVSKMTNLAGDLVGVEIP 866

Query: 851 VSGKINCPKKD--IIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           +   +        I I GR+D++    +  + +++ KT    P   E        Q+++Y
Sbjct: 867 MDVTVGQLDDGSPIRIKGRLDRVHRDSEGRMKVYDLKTGRSAPTYQEAES---HPQMAVY 923

Query: 908 EK 909
           + 
Sbjct: 924 QL 925


>gi|19552005|ref|NP_600007.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|62389668|ref|YP_225070.1| DNA helicase RECQ [Corynebacterium glutamicum ATCC 13032]
 gi|21323545|dbj|BAB98172.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325003|emb|CAF19484.1| PUTATIVE DNA HELICASE RECQ [Corynebacterium glutamicum ATCC 13032]
          Length = 678

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 93/668 (13%), Positives = 173/668 (25%), Gaps = 178/668 (26%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A+        Q        L            +    +   +K  D+  +++ 
Sbjct: 81  ARTFHAAARKQLLYFWPQVAGNLPWRLLDNKFQLVGRAVRGARLESQTEKVRDILGEIEW 140

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII-------N 155
           ++   I   +++      ++  A       +   YE  K        E +++       +
Sbjct: 141 AKASLIT-PEQYPDRLGTRTPPAPAEKIAEVYQRYENMKAT-----PEGMLLDFDDLLLH 194

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
           T   L+       +  +  Q+    ++DE QD + +Q  V+ +   D             
Sbjct: 195 TAGALENSPA---VAEEFRQQYRSFVVDEYQDVTPLQQRVLDAWLGD----------RDD 241

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD  Q+IYSF GA P+ +L   R           + ++++L   +RST  +  + +
Sbjct: 242 LTVVGDANQTIYSFTGATPEFLLNFSRKYP--------EATVVKLQRDYRSTPQVTALAN 293

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            V             + T +  +  RI                                 
Sbjct: 294 TVIGQARGR-----VAGTRLELQGMRIAGPEP---------------------------E 321

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                     AR +A  I  ++             +QA +I VL R    + +       
Sbjct: 322 FSAFDDEPTEAREVAGRILTLLKNG----------VQASEIAVLYRINAQSAVFEQAL-- 369

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
              D  I               I       R  LSQ    S   + +S L   ++  +  
Sbjct: 370 --ADAGIVYQVRGGEGFFTRPEI-------RQALSQLIRTSQRDVDESDLVRLTQRTLVP 420

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           +     E     E             +   + ++                          
Sbjct: 421 LGLSSEEPSGAQE-------------RERWQSLN-------------------------- 441

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                            ++      + +       +    +     K   +     V + 
Sbjct: 442 ---------------ALVDLVKDLVKATPDLDLTGLLLKLRERQEAKHPPTVEG--VTLA 484

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H AKGLE   VFLV          H  K                              
Sbjct: 485 SLHAAKGLEWDAVFLVGLVDSTLPISHAIKSG---------------------------- 516

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                    EE  RL YVG+TRA + L             K   +  + D +     ++ 
Sbjct: 517 -----DEAIEEERRLFYVGVTRAREHLHCSWALARQEGGRKSRKRSRFLDGIVVEMASES 571

Query: 694 RVKKIKLT 701
              +    
Sbjct: 572 GTPRSNRP 579


>gi|261368777|ref|ZP_05981660.1| putative ATP-dependent DNA helicase PcrA [Subdoligranulum variabile
           DSM 15176]
 gi|282569133|gb|EFB74668.1| putative ATP-dependent DNA helicase PcrA [Subdoligranulum variabile
           DSM 15176]
          Length = 435

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 21/202 (10%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
            +       LK+ +     I++     +   +    L     L   Y+   K+   +D++
Sbjct: 136 AEDYPTDSTLKELRTAITYIKNMALDEEGIAALETDLPDLPALYHRYQAELKRRGWMDYD 195

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           D ++    +LK       +         ++ +DE QDTS IQ E+I  L           
Sbjct: 196 DQMVFALQILK---AVPAVLGYFQDRYRYLCVDESQDTSKIQHEIIALLAG--------- 243

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
              R LF VGDE QSIY F  A P+ ++  +++             ++ +  ++RS  +I
Sbjct: 244 -RSRNLFMVGDEDQSIYGFRAAYPQALMEFEKVWP--------GARVLLMEHNYRSGTEI 294

Query: 271 LTVVDKVFSIPENAQGLSEDST 292
           +   +   +     +     +T
Sbjct: 295 VDAANHFVARNRYRRPKVMRAT 316


>gi|321310938|ref|YP_004193267.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802782|emb|CBY93428.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str.
           Langford 1]
          Length = 584

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 81/548 (14%), Positives = 169/548 (30%), Gaps = 105/548 (19%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL----AKYL 133
              Q +I  + +NK   + K      +D    +  ++    M   T A   +     + +
Sbjct: 112 GDFQDSIFRKALNKAKTESKFSRYSLKD-LKDLVSKYKIS-MHLGTDALTPIELHKVREV 169

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+  ++  +LDF+D++I  + L         I      +   IL+DE QD   IQ+
Sbjct: 170 FDEYEKILEEKNLLDFDDVLIFVDKLF---HEVPIILEFWQNKYKAILVDECQDLDEIQF 226

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +IR L E               FAVGD  Q I+ F GA+       K + +        
Sbjct: 227 RIIRKLVEK---------ENPNFFAVGDPNQCIFIFKGAKENIFEEFKNLFE-------- 269

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
            F  IEL  ++RS   I+   ++            +        ++    Q     L   
Sbjct: 270 DFEEIELVTNYRSDKSIVKYSNE-----------KKILPRPAISKAHSKEQGCISFLPYV 318

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                +    P  +             +  ++ + I   I                  + 
Sbjct: 319 DNLLKEKLLIPNIDLSRWSVLFRYNNDARFLVDQLIENRI----------------PFRT 362

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
               +L                                  +  AI+ ++   + I   ++
Sbjct: 363 SHFYLL----------------------------------EDPAIEKIVNYLKVIY-FDN 387

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS---------KFQHV 484
                 +L S      +  + +IC + +   +            +          K    
Sbjct: 388 SKPLKTILHSKDLALDKHTVKEICAEGNYVGSTLFSFLIHETEWLDLPISDSDISKLGIF 447

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT--LRNEQN 542
           ++ I  L  + +          I+        F+ +      D +D F+ +   ++ E+ 
Sbjct: 448 LERIKRLRRM-EKDYLAGLVESIVPII-----FMGKITPATRDKIDLFILWLDTIQVEKT 501

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
            +S+ + +++ +     + +  ++  HN + + T+H  KGLE   V ++       S   
Sbjct: 502 LFSAEEIVVNMISYAEISKEDINAKRHNYLTLSTIHKTKGLEWENVIVLRYEELQKSSTK 561

Query: 603 IKKMHIMP 610
                 + 
Sbjct: 562 SGNDKYLE 569


>gi|237706519|ref|ZP_04537000.1| exonuclease V subunit beta [Escherichia sp. 3_2_53FAA]
 gi|226899559|gb|EEH85818.1| exonuclease V subunit beta [Escherichia sp. 3_2_53FAA]
          Length = 581

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/553 (12%), Positives = 159/553 (28%), Gaps = 96/553 (17%)

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH- 483
            + +++ E + +    L + +   +  DI  +    +  E  ++ + +  +     ++  
Sbjct: 1   MQAVMTPERENTLRSALATSMMGLNALDIETL----NNDEHAWDAVVEEFDGYRQIWRKR 56

Query: 484 -VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRN 539
            V+  +  L       S  +    +L    G ++            + E L      L +
Sbjct: 57  GVMPMLRAL------MSARNIAENLLATAGGERRLTDIL------HISELLQEAGTQLES 104

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E      L + I E +    + +    ++ + V+I+T+H +KGLE P+V+L    +    
Sbjct: 105 EHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQ 164

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +                      ++    N   + +   +     E  RLLYV +TR+ 
Sbjct: 165 DQAFYHDR-------------HSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSV 211

Query: 660 DQ--LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
               L +        +KK +       +       E      L   I         W T 
Sbjct: 212 WHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCNDDIAWQTA 271

Query: 718 ------HPENTPLEREETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPST 761
                   +       E   + +          +              D+     ++ + 
Sbjct: 272 QIGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAG 331

Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
           + +  +    +     +  + G  +H L + +         N++          +  +  
Sbjct: 332 VVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPID-PNWVQEKLELGG--FEPQWE 388

Query: 822 KNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK---------------- 859
             L   IT +L+ P+      +      D   E+     I+ P                 
Sbjct: 389 LVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLS 448

Query: 860 ----------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTH 900
                        ++ G ID +   +   ++ +YK++                    + +
Sbjct: 449 AGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRY 508

Query: 901 IAQLSIYEKILKD 913
             Q  +Y   L  
Sbjct: 509 DLQYQLYTLALHR 521


>gi|227541922|ref|ZP_03971971.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182365|gb|EEI63337.1| helicase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 1025

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 77/602 (12%), Positives = 168/602 (27%), Gaps = 68/602 (11%)

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLA 417
              +      R I  +D++V+ R     P      +       + V   +   +L +   
Sbjct: 341 ARELREVHLIRDIPWEDMVVITRSLSQIP----ALQRALATADVPVHIDSTDVVLVEQSI 396

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE------TETVYEYIQ 471
           ++ ++     ++    +   + +   P+       + +I  +  E               
Sbjct: 397 VQAMLQAVDIVMGNGTEEDIIELATGPIGGADPITLRRIQREIGELGPVVRGAARVAEDA 456

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR---QQFISRFG----NE 524
           +      S   H+   I       +     +     +    G    + + +  G     +
Sbjct: 457 RLGEQAESVLAHLSAVIQTGREAVERGDSLELILWSIWEATGLSTSKMYTALRGVPAAAQ 516

Query: 525 VIDVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVH 578
               L+   E  +      E+    SL+  I  L        ++         V ++T H
Sbjct: 517 ANRDLNAMMELFDVAGDYVERVKQPSLEGFIEHLTSQDLPTGVRERQVVAPKAVALLTAH 576

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            A   E   V L       +    +           D              N+  D    
Sbjct: 577 GAIDDEWNTVILAGADDDSWPSLGLTGTIFDQEELVDL----------IDENVDPDAYID 626

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---------VYDSF 689
             +    E  RL  +  +RA+D L+I   +    +    Q + +           V    
Sbjct: 627 RLRERLHEEQRLFSLVTSRATDTLVITAINPAEEDSPLPQPSRFVRKLEEDETFSVSTVV 686

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----- 744
             DE   K            +    S+   +    +    +      +  P   +     
Sbjct: 687 ETDELAVKSSRPFIAELRRALTSADSSDEEKEEAADLLAMLADAGFSEADPTNWWGLAGP 746

Query: 745 --SPIKNDINEPYILNPSTIDTKGKTNLES------LLSDNQTFNRGLIIHKLLQVIFTL 796
             +    +  +P  L+PS +++  +  L+           +     G ++H L +   TL
Sbjct: 747 TDAQPLREPRQPATLSPSQVESGLQCPLKMVLNSVTPTESSSALREGNLLHALAEASVTL 806

Query: 797 --PEHKRKNFITSYCTKN--AKLWPAKEYKNLLLSITRLLEN--PMMTTAMSCDSYSEVS 850
              E   K            ++  P  + K        ++      MT         E+ 
Sbjct: 807 QQDEETWKEAEQLVLDAYLSSRTVPPWKEKADEEEFVEVMNATVSKMTNLAGDLVGVEIP 866

Query: 851 --VSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
             V+         I I GR+D++    +  + +++ KT    P   E        Q+++Y
Sbjct: 867 MDVAVGQLDDGSPIHIKGRLDRVHRDSEGRMKVYDLKTGRSAPTYQEAES---HPQMAVY 923

Query: 908 EK 909
           + 
Sbjct: 924 QL 925


>gi|218512646|ref|ZP_03509486.1| ATP-dependent DNA helicase protein [Rhizobium etli 8C-3]
          Length = 240

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 21/177 (11%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A     + L A Y EAK+   VLD++DL++    ++ +  ++  I        +H+L+D
Sbjct: 60  AAWEKQLRELFACYVEAKQSQNVLDYDDLLLYWAQMVGESVIAGDI----SSRFDHVLVD 115

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ +Q  ++ +L              + L  VGD+ QSIYSF  A  + +L     
Sbjct: 116 EYQDTNRLQASILMAL----------KPQGQGLTVVGDDAQSIYSFRAATVRNILDFPAA 165

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                       +I+ L  ++RST  ILT  + V  +       +  +      R  
Sbjct: 166 FS-------PPANIVTLDRNYRSTQPILTAANAVIDLASERFTKNLWTERQSSERPR 215


>gi|169630592|ref|YP_001704241.1| DNA helicase II [Mycobacterium abscessus ATCC 19977]
 gi|169242559|emb|CAM63587.1| Probable DNA helicase II homolog UvrD2 [Mycobacterium abscessus]
          Length = 689

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 100/777 (12%), Positives = 198/777 (25%), Gaps = 183/777 (23%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF-L 74
           +          ++    + + +             + L+        + R+ L+ S F L
Sbjct: 57  LAVTFTQRAAGEMRGRLRDLGVGSAQAVTFHAAGLRQLRYFWPQLVGDTRWELIDSKFTL 116

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-LTLAKYL 133
             +   +  + T        DL  +++ ++   I           F             +
Sbjct: 117 VAQAANRAKVST--TTDTVRDLAGEIEWAKASLISPETYPAAAAKFGRDAPVPAEQVAKV 174

Query: 134 NAHYEEAKKKNCVLDFED----------LIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A YE+ K +       D          L+     +    + SA +  +        ++D
Sbjct: 175 YAGYEKLKAR------PDGSTLLDFDDLLLHTAAAI----ENSAAVAEEFRDRYRCFVVD 224

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QD + +Q  V+ +                 +  VGD  Q+IYSF GA P+ +L   R 
Sbjct: 225 EYQDVTPLQQRVLDAWLG----------PRDDVTVVGDANQTIYSFTGATPQYLLGFSRR 274

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       +++ L   +RST  ++++ +++ S  +        + + ++    R  
Sbjct: 275 FP--------DATVVRLERDYRSTPQVVSLANRLISAAQGR-----VAGSKLQLIGQRPQ 321

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                                             +    +  A+ +A +I+ +I + T  
Sbjct: 322 GPAP---------------------------RFSEHDDEAAEAKSVAKSIAALIESGTP- 353

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                    A ++ VL R    + +             I               ++  + 
Sbjct: 354 ---------ASEVAVLYRINAQSEVYEEALTE----AGIPFQVRGGEGFFTRQEVRQALV 400

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
             +    +ED                      +       E +            ++ + 
Sbjct: 401 ALQRAAGRED--------------------AGMPVPEQVREILEPLGLSQEEPHGTQARE 440

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             + +  L+ +A                                             +  
Sbjct: 441 RWESLRALVELADE----------------------------------------ECARQP 460

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
              L  L+ EL                 V + ++H AKGLE   VFLV          H 
Sbjct: 461 ELDLPGLVRELRVRAEARHPPTVQG---VTLASLHAAKGLEWDAVFLVGLADGTLPISH- 516

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                          L +       EE  RLLYVG+TRA   L 
Sbjct: 517 ------------------------------ALSRAGDIEPVEEERRLLYVGITRARVHLN 546

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +    + +       R     +       +                     +   P    
Sbjct: 547 LSWALSRA-AGGRKSRKHSRFLNGIAPTAQLPASATPRRRGGGARCRVCNAALSTPAAVL 605

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
           L R E+    +DE+ +       +K              D       E L  D+   
Sbjct: 606 LRRCESCPSDIDEELLVALKDWRLKTAKEMKVPAFVVFTDNTLIAIAELLPGDDAAL 662


>gi|239944120|ref|ZP_04696057.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 591

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 76/547 (13%), Positives = 160/547 (29%), Gaps = 41/547 (7%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L      Q +  + Y    +       L  A  L+  S  +       
Sbjct: 49  AAVELRDRMAARLGAARGPQATTFHSYCYALVRAHQDADL-FADPLRLLSGPEQDVTVRE 107

Query: 68  LLSS-FFLTQKF--------TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+    L ++           +  + T+    +   +      ++   + +        
Sbjct: 108 LLAGQLDLEKEGLAQVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLGPDALADF 162

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++     T A    A Y +      VLD+ +L+     L ++ +V+A     +    +
Sbjct: 163 ARRTGRPDWTAAAQFLAEYLDILDAQGVLDYAELVHRAVLLAERPEVAAE----LAGRYD 218

Query: 179 HILIDEVQDTSLIQWEVIRSLTED-----------FFVGKNTHSSPRTLFAVGDEKQSIY 227
            + +DE QDT   Q  ++ +L  +                    + RTL A GD  QSIY
Sbjct: 219 AVYVDEYQDTDPAQVRLLHALAGNQGRAPEYAQPTEKARGAGARAGRTLIAFGDPDQSIY 278

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +F GA+   +L      ++     G    +  L  S RS A +L     +       +  
Sbjct: 279 TFRGADVNGILDFPDTFRR---ADGSPAPVGVLTTSRRSGAGLLAATRLLTRRMPLTRLP 335

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           ++         + R G       +    ++ D+  +  + +         + +       
Sbjct: 336 ADTVRAHRELHAVRDGGRVETYTYPTASTELDNIADLLRRAHLEDGVPWQEMAVLVRAGG 395

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
           R    +   + +  +        +  +    +         +         D        
Sbjct: 396 RSLPAVRRALTSAGVPLEVDGDDLPLRHEPAVAPLLTALRAVATAALQCLPDLPDLPDLP 455

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
           DR  L D        A      S  D  + + +L SPL +    D+ ++     + E   
Sbjct: 456 DRSGLPDLPEGDPGEA---GAPSWLDTETALTLLTSPLGSMDAADLRRLGRALRDEER-- 510

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
               +            +     L         +      LGA   + + + + G    +
Sbjct: 511 AAGIRIPAPSDELLARALAEPERL---VTHDPAYAHGAQRLGALLRKARELLQGGGTAEE 567

Query: 528 VLDEFLN 534
            L    N
Sbjct: 568 ALWTLWN 574


>gi|300779591|ref|ZP_07089447.1| probable helicase [Corynebacterium genitalium ATCC 33030]
 gi|300533701|gb|EFK54760.1| probable helicase [Corynebacterium genitalium ATCC 33030]
          Length = 1040

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 82/643 (12%), Positives = 187/643 (29%), Gaps = 108/643 (16%)

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            DT+     +  +  +D+ V+VR       +    R       + V  N   ++     I
Sbjct: 325 ADTLRRAHLEEGVPWRDMAVVVRSVG----MIEPLRRTLLQAGVPVAINPTDLVLGEQRI 380

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC----------TQRHETETVYE 468
              M LG   L+  D   +  +L  P+       + ++                   +  
Sbjct: 381 VAAMLLGLRALNGLDATHWRELLLGPVGGADPVTLRRLLRGLRRWRPEVRAEDTLSELLA 440

Query: 469 YIQKFANCGISKFQHVIKYIHELI--------HIAQFCSPHDFFTLILGAKKGRQQFIS- 519
              +  + G    Q  +  +  +          +    S  +    +       +  ++ 
Sbjct: 441 LRGELPDFGAILTQRELDILDRIRGVLEAGRTSLDDGGSVEEVLWAVWAQTGLAESLMAI 500

Query: 520 -----RFGNEVIDVLDE---FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAH--SAN 568
                  G++    LD      +      E+   ++++  I+ +E+           +A 
Sbjct: 501 ALRGGAAGSQADRDLDAMMALFDAAGDFTERRPTATIEAFIAHIEEQELPTGVRDRRTAV 560

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V ++T H   G E   V + +     +         +      D             
Sbjct: 561 PDAVPLLTAHGVAGREFARVIVSEVQELSWPTLSETGTLMRQEDLIDL----------VD 610

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
             I             +E  RL +V +TRA++Q+I+        ++      +     D+
Sbjct: 611 QGIDPATPVSHTVDRLKEERRLFHVAVTRATEQVIVTAVDAPDGDEVIEPSRFVQQFADA 670

Query: 689 FH-------------------------------NDERVKKIKLTNSINKDEWIAYEWSTH 717
                                             +E    +     +  ++ +A      
Sbjct: 671 RGTIPEHVSTGTAASGAAEQQTLFDGVDTSTTGREEVHVDVAPVRVLAVEDIVAELRRAI 730

Query: 718 HPENTPLEREETIKQLMDEQK-----------IPKKLFSPIKNDINEPYILNPSTIDTKG 766
             E++  + +    + +                     + I   +  P  L+PS I+   
Sbjct: 731 TDESSSEDVKLQAARQLARLAEAGVPGADPGQWWGIREASISEGVEPPGRLSPSRIEGLL 790

Query: 767 KTNLESLLSDN------QTFNRGLIIHKLLQVIFTLPEHKRKNF--ITSYCTKNAKLWPA 818
           +  + ++L  +          RG + H   + +    + +      + +Y          
Sbjct: 791 ECPMRNVLERDVAPASSDAMTRGTLAHYFFEAVGNGADVELAQADTLEAYRALFTVPSWK 850

Query: 819 K-----EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873
           +     E+  LL    + +E    T  +     +EV V  ++      + I GRID++  
Sbjct: 851 EVSDLGEFTRLLGRAAQWVEETRGTFELVD---TEVPVDVEVAP---GLRIGGRIDRLER 904

Query: 874 SQ-QNIFIFEYKTH--HHVPQEIEHIPYTHIAQLSIYEKILKD 913
            +   + I + KT   H    E E  P     QL++    L++
Sbjct: 905 EESGAVHIVDLKTGKNHPSAAEAEENPQLFAYQLALSRGALRE 947



 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 93/922 (10%), Positives = 228/922 (24%), Gaps = 119/922 (12%)

Query: 29  SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ- 87
             ++      +       +  A  ++  S  +       LL         +  + +    
Sbjct: 103 RSVHSLAFALLRASEDPAVAAATLIRLISGAEQDFAIRELLQGNAADGTGSWPEELRPAL 162

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            +   +  L++ L ++ +    +             +   + A    A Y++        
Sbjct: 163 PMVGFARQLRDFLLRAVER--TLTPGQLRDMGRTHGIPVWSAAGDFLAEYQDVMALYGAR 220

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            +               V+  +R  + +    + ID+ Q        ++  L  +  +  
Sbjct: 221 SYS----------ASELVAEVVRRPLPRTWGTVFIDDAQHLDPASGILVNQLIAEADLA- 269

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR-- 265
                       GDE+Q+++ F GA P                       I+L +S R  
Sbjct: 270 ---------VVGGDEEQAVFRFRGASPLFFKNL-------------DAPTIDLGVSRRTP 307

Query: 266 STADIL----TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
           +   ++     + +   +       L E           R   +        + +     
Sbjct: 308 TARAVIAPDGAMNNAFVADTLRRAHLEEGVPWRDMAVVVRSVGMIEPLRRTLLQAGVPVA 367

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
            NP                    L    A     ++    +   G    +  + +L  +R
Sbjct: 368 INPTDLVLGEQRIVAAMLLGLRALNGLDATHWRELL----LGPVGGADPVTLRRLLRGLR 423

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
           + +           L                 +   +  +  +     +  DD   V  +
Sbjct: 424 RWRPEVRAEDTLSELLALRGELPDFGAILTQRELDILDRIRGVLEAGRTSLDDGGSVEEV 483

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
              ++  +      +           +  +            +     +        +  
Sbjct: 484 LWAVWAQTGLAESLMAIALRGGAAGSQADRDLDAMM-----ALFDAAGDFTERRPTATIE 538

Query: 502 DFFTLILGA---KKGRQQ---------FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            F   I         R +          ++  G    +     ++        S+ +L E
Sbjct: 539 AFIAHIEEQELPTGVRDRRTAVPDAVPLLTAHGVAGREFARVIVSEVQE---LSWPTLSE 595

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTV----------HTAKGLESPVVFLVDTGSQVFS 599
             + + Q           +       TV          H A    +  V +    +    
Sbjct: 596 TGTLMRQEDLIDLVDQGIDPATPVSHTVDRLKEERRLFHVAVTRATEQVIVTAVDAPDGD 655

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                   +    +    IP  +    + +             T       ++V +    
Sbjct: 656 EVIEPSRFVQQFADARGTIPEHVSTGTAASGAAEQQTLFDGVDTSTTGREEVHVDVAPVR 715

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
             L +           +++ +  D+   +     R+ +  +  +     W   E S    
Sbjct: 716 -VLAVEDIVAELRRAITDESSSEDVKLQAARQLARLAEAGVPGADPGQWWGIREASISEG 774

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
              P     +  + + E  +   L   +                           + +  
Sbjct: 775 VEPPGRLSPSRIEGLLECPMRNVLERDVAP-------------------------ASSDA 809

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNF--ITSYCTKNAKLWPAK-----EYKNLLLSITRLL 832
             RG + H   + +    + +      + +Y          +     E+  LL    + +
Sbjct: 810 MTRGTLAHYFFEAVGNGADVELAQADTLEAYRALFTVPSWKEVSDLGEFTRLLGRAAQWV 869

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQ 891
           E    T  +     +EV V  ++      + I GRID++   +   + I + KT  + P 
Sbjct: 870 EETRGTFELVD---TEVPVDVEVAP---GLRIGGRIDRLEREESGAVHIVDLKTGKNHPS 923

Query: 892 EIEHIPYTHIAQLSIYEKILKD 913
             E        QL  Y+  L  
Sbjct: 924 AAEAEEN---PQLFAYQLALSR 942


>gi|212696674|ref|ZP_03304802.1| hypothetical protein ANHYDRO_01215 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676405|gb|EEB36012.1| hypothetical protein ANHYDRO_01215 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 860

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 87/562 (15%), Positives = 170/562 (30%), Gaps = 119/562 (21%)

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
           K+  S+ A  +LA  +   + +   KN +++++ ++ N  DLL+          KI   I
Sbjct: 161 KLRNSSNAKDSLALEVYLKWADFLDKNNLINYQLILKNFYDLLEDPIFGK----KIRDRI 216

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
           + ++IDE QDT+ IQ E+  +L              + L   GD+ Q++YSF GA P+ +
Sbjct: 217 DFVIIDEYQDTNKIQEEIAFNLC-----------KGKNLMVFGDDDQALYSFRGASPRNL 265

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
               +  +K+           EL +++RS  +I+       S     +  + D       
Sbjct: 266 REFDKSCKKK---MKADAKFYELDINYRSNQEIIDK-----SRDFLVKSQAFDVEKIKNL 317

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
           ++S   +                             +      + +     I   +  + 
Sbjct: 318 KASEKNK-----------------------------NENSVVRARANNYENIEKIVKFL- 347

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                      + I    I  L              +    ++ I+V+     +      
Sbjct: 348 ----------NKKINLNQIAFLFPSLN--SDYPKSLQTYFENHGINVLNKSSKLFFKR-- 393

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            +++      +LS            SP       D +K   + +  + +           
Sbjct: 394 -REIRLCLYVLLSIFSKKPKKLTGSSP-------DKYKWVQETNFKKYIGGIFDNKEFVK 445

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF--ISRFGNEVID--VLDEFL 533
             K    I    E + +AQ  S  D      G    R+         N++ +   + +F 
Sbjct: 446 DEKLNAFIN--EEKLSLAQNKSYTDILYRAFGLDIFRKILGQKMDDLNQIRELSNIGKFT 503

Query: 534 NFTLRNEQNSYSSLQELISELEQY-----------PPTIKRAHSANHNEVRIMTVHTAKG 582
           +           ++      ++               +         + V   T+H AKG
Sbjct: 504 SILSDFINLQGDNINYYEKSVDLIYGYIFYLFKNSSISEFENFDVPKDSVIFSTIHQAKG 563

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE  VVF+     +                             K R      +    K  
Sbjct: 564 LEYDVVFVSSLYDKP---------------------------RKDREAFSPQIDVKNKSD 596

Query: 643 TQEEYNRLLYVGMTRASDQLII 664
             + Y R  Y   TRA + L++
Sbjct: 597 YLKNYYRKYYTAFTRAKNLLVL 618



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 39/185 (21%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                +  + G  +H L + +  L +                          L  I   +
Sbjct: 682 RKEKTKALDFGSKVHSLSEYLTNLKKENLS----------------------LEKINDFI 719

Query: 833 -ENPMMTTAMSCDSYSEVSV---SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
            EN      +         +      I   +KD I+ G ID +  +     I + KT   
Sbjct: 720 RENKEFQRPIENFVNRNFPIKNSEMNIKLDRKDYILQGNIDIVLENG---TIIDIKTGKI 776

Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIPQNKLN-KAFAE 946
                     ++  QL  Y  +L   Y NK +    L ++ E ++  + ++  + +    
Sbjct: 777 NN------LSSYKNQLLTYYNLL--VYNNKKVDRMFLYFIEEDELIEVEKSDFDMEYIDR 828

Query: 947 ISTKI 951
           I   I
Sbjct: 829 IGKNI 833


>gi|269977410|ref|ZP_06184382.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
 gi|269934326|gb|EEZ90888.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1]
          Length = 533

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 67/330 (20%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYE 138
             +       +  DL  +++ ++   +   +     +       +         L A YE
Sbjct: 151 ARLGLDPSRAQVRDLAGEIEWAKVSLLAPDEYVEAARAAGRMGVANLNPERIADLAAAYE 210

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           E K +   LDFED+++    +L   D    +   +     + ++DE QD S +Q  ++  
Sbjct: 211 EVKAEAQALDFEDILLVCAGML---DEREDVLRAVQARYQYFVVDEYQDVSPLQNYLLLR 267

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
                          R L  VGD  Q+IYSF GA P  +    R   +          ++
Sbjct: 268 WLGH----------RRDLAVVGDAAQTIYSFAGATPSFLTDFTRGYPE--------AKVV 309

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           EL   +RST  ++ + ++V +  ++A G                   GTVQL        
Sbjct: 310 ELTRDYRSTPQVVGLANQVLADAKDAAGRPL---------------GGTVQLV------- 347

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
             + +     W    D           A  +A    +++   T            KDI +
Sbjct: 348 SQREDGPDVQWFIAED-------DQTEASTVAKRSWHLMKQGT----------NPKDIAI 390

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           L R      L             +  V  D
Sbjct: 391 LFRTNSQAGLFGTEL----ARMGLPYVVKD 416



 Score = 43.8 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 35/127 (27%)

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              + + ++H+AKGLE   VFLV     +                               
Sbjct: 434 REAITLASLHSAKGLEWEAVFLVGASEGLLP----------------------------- 464

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                 +      +  EE  RL YVG+TRA   L I             +     +    
Sbjct: 465 ------INLSTTDAQIEEERRLTYVGITRARSLLTISYAKGKRPGASGEREACRFLAPFW 518

Query: 689 FHNDERV 695
                 V
Sbjct: 519 ARPQLDV 525


>gi|2145362|emb|CAA70668.1| AddA [Bacillus subtilis]
          Length = 233

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 78/243 (32%), Gaps = 31/243 (12%)

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
           W+  H E T +  ++++ ++  +++   +              + P+      +     +
Sbjct: 1   WTYPHQEVTQIRTKQSVSEIKRKREYEDEYSGRAP--------VKPADGSILYRRPAFMM 52

Query: 774 LSDNQTFNRGLIIHKLLQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSIT 829
                   +G  +H ++Q I         + +  +     K   L   ++   + +  I 
Sbjct: 53  KKGLTAAEKGTAMHTVMQHIPLSHVPSIEEAEQTVHRLYEKE--LLTEEQKDAIDIEEIV 110

Query: 830 RLLENPMMTTAMSCDSY-SEVSVSGKINC---------PKKDIIISGRIDQISISQQNIF 879
           +     +    +       E+  S  +             + +++ G ID +  ++  ++
Sbjct: 111 QFFHTEIGGQLIGAKWKDREIPFSLALPAKEIYPDAHEADEPLLVQGIIDCLYETEDGLY 170

Query: 880 IFEYKTHHHV-------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
           + +YK+                 +   +  Q+ +Y K ++     K   C L +     +
Sbjct: 171 LLDYKSDRIEGKFQHGFEGAAPILKKRYETQIQLYTKAVEQIAKTKVKGCALYFFDGGHI 230

Query: 933 FII 935
             +
Sbjct: 231 LTL 233


>gi|99035028|ref|ZP_01314824.1| hypothetical protein Wendoof_01000338 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 438

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 18/220 (8%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL------QQASQTQCIEERF----- 66
            ++  L    +  + +   +  E G+      ++ L          + +    R+     
Sbjct: 223 DEIHDLQSETIEHVERLAEILSE-GSKRDQSYSEILYSTVIPAGIQKKRTSVTRWNDTKV 281

Query: 67  SLLSSFFLTQKFTPQKNI---ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
             L+  FL  +   +K+I    T+ I +K  D ++ ++  Q+         N+Y++FK T
Sbjct: 282 ENLAKVFLKSESHEKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQIFKRT 341

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            + L + K     Y   K KN +LD+ D+I    +LL   +   WI + +DQ+I+HIL+D
Sbjct: 342 SSLLGVFKVYVDLYNSEKSKNALLDYNDIINLATNLLSNPNYKDWILFNLDQKIDHILVD 401

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           E QD S+ QW++I +L ++FF G   +   RTLF VGD K
Sbjct: 402 EAQDNSISQWKIITNLCDEFFAG---NDEKRTLFVVGDVK 438


>gi|89885768|ref|YP_515966.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
 gi|89347766|gb|ABD71968.1| UvrD/REP helicase [Rhodoferax ferrireducens T118]
          Length = 606

 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 87/640 (13%), Positives = 182/640 (28%), Gaps = 127/640 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T     +  ++  +     +   +  S F +      +            +  + +K++ 
Sbjct: 53  TDASAKEARERIGKLLTSVQMRRVTVSTFHSHAIEQLRRAGKLGRIMAPHESTDLVKRAL 112

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLA---KYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
            +     D        ++  AS       K     YE  K  +  +D +D++    + ++
Sbjct: 113 VDCGSTMDFMEAEAELQAAKASPEFTGEEKDFIKAYEHRKLLHRSIDLQDVVREAVNGMR 172

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
            ++    I         H+L DE QD    Q   +     +F            +  VGD
Sbjct: 173 AKNADKHIPPLAA---THVLCDEFQDVDWNQLHWL-LCYREFGA---------IVTVVGD 219

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           + QS+Y +  A         +  + R        ++I L +++RS  +I+     +    
Sbjct: 220 DDQSVYGWRNA---LGYAAMQAFRDRVN-----PTVITLEVNYRSRREIIQSATCLIRNN 271

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                    S         +IG  G V L +    + +                      
Sbjct: 272 PKRMDKVVVS---------KIGDGGEVFLAKPADKEAE---------------------- 300

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                   A  I + I  D      +  ++      V+ R  +D  LI  + R       
Sbjct: 301 --------ATMIIDAIINDAEEKGHELHLVPTGRWGVIARNNRDLWLIAAMLR----KAG 348

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I  V + +       A  ++M     ++S + + S            SE  +  +  +  
Sbjct: 349 IPFVKSTK----KDDAPWEIMRFCGMLVSIQTNDSLGLRQTMSSMGISEKTLRSVHDKMG 404

Query: 462 ET-----ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
           +      +  +  ++  A       +  ++       +            + G       
Sbjct: 405 DDFYRIMDGDFPDLEDVAIEDKPLLKAFLQICPRWRDLTANGHYGRVIGAV-GEWFLDTI 463

Query: 517 FISRFGNEVIDVLDEFLN------FTLRNEQNSYSSLQELISELEQYPPTIK------RA 564
                  +      + L+              + SS+++ +    +    ++      + 
Sbjct: 464 VRGDDTIQDFRNFVKMLSGDSSKMSGTDFPSTTGSSVRQNLRARPRGNLQVRVLNYFRQD 523

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              +   V + T+H +KGLE   VFLV   S                             
Sbjct: 524 DKKSSGGVALYTMHGSKGLEFDKVFLVQCNSGTIPSS----------------------- 560

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                          K  + +E  RL YV MTRA  +L +
Sbjct: 561 ---------------KSKSVDEERRLFYVAMTRARQELTM 585


>gi|145596251|ref|YP_001160548.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145305588|gb|ABP56170.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 719

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/427 (12%), Positives = 126/427 (29%), Gaps = 77/427 (18%)

Query: 2   KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
           ++   ++         +               + + ++      +   A  L        
Sbjct: 59  RHLLAVTFTARAAAELRSRLTALGVPGVQARTFHAAALR----QVRYFAPRLLAGRAMPE 114

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
           + +    L +    +          +++  +    K  L +  +  +         +  +
Sbjct: 115 LLDSKVRLVTLAAAKVGIRSDRAGVRDLAGEIEWAKSSLVEPGEYVVA------AARALR 168

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            T         + A YE+AK+   V+DFED++      ++       +  ++  +  H +
Sbjct: 169 DTPYEPARVADVFAAYEKAKRAGGVIDFEDMLRAAIWGIEDHPD---VADQVRAQYRHFV 225

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD + +Q  ++ +                 L  VGD  Q+IYSF GA    ++   
Sbjct: 226 VDEYQDVNPLQQRLLEAWLG----------GGDDLTVVGDASQTIYSFTGATSSYLVDFP 275

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R  +          +++ L   +RST  ++ + + V +                      
Sbjct: 276 RRYR--------GATVVRLVRDYRSTPQVVGLANSVIA---------------------- 305

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             +    +L  ++V Q      P+   +T         ++              ++   T
Sbjct: 306 PARGAEARLRLELVGQRPPGPEPELRIFTDEPAEAAAVAARCRA----------LVDAGT 355

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                      A++I VL R    +          +    +           + + ++  
Sbjct: 356 P----------AREIAVLFRTNAQSEAYEEALTEAE----VPYQVQGAERFFERVEVRQA 401

Query: 422 MALGRFI 428
           M   R  
Sbjct: 402 MVALRAA 408



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 44/141 (31%), Gaps = 38/141 (26%)

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              ++L +   EL +               V + ++H+AKGLE   VFLV          
Sbjct: 475 ERPATLADFTDELARRAAAQHVPTVEG---VTLASLHSAKGLEWDAVFLVGLAEGTLPTT 531

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           + K                                        EE  RLLYVG+TRA + 
Sbjct: 532 YAKTP-----------------------------------EQVEEERRLLYVGITRAREW 556

Query: 662 LIICKHSNTSNEKKSNQRTWY 682
           L +   S  S   +  +   +
Sbjct: 557 LWLSYASARSPGGRPRRPCRF 577


>gi|301059731|ref|ZP_07200627.1| ATP-dependent DNA helicase, RecQ family [delta proteobacterium
            NaphS2]
 gi|300446151|gb|EFK10020.1| ATP-dependent DNA helicase, RecQ family [delta proteobacterium
            NaphS2]
          Length = 1740

 Score =  128 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/395 (14%), Positives = 124/395 (31%), Gaps = 56/395 (14%)

Query: 149  FEDLIINTNDLLKKR-----DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
            F+ +I +   LLK             R ++    +HIL+DE QD    Q++++ ++    
Sbjct: 1220 FDRIIKDAVRLLKGEKDVPGTEPDEHRDRLLAGYSHILVDEYQDIDEDQYDLVSAIAGRS 1279

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                +       + AVGD+ Q+IY+F GA  + + R +    +          ++ L  +
Sbjct: 1280 VTEADNR---LNIMAVGDDDQNIYTFRGANVRFIRRFRTDYSR---------EVVYLVEN 1327

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            +RS+ +I++  + +     +   +  D   T+ H        G  +  + V        +
Sbjct: 1328 YRSSKNIISAANALIRANRDR--MKTDHPITVNHERQYNAPGGRWERIDPVSRGRVQMVS 1385

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
             +               + S  A  +   I  ++  D          +   D  VL R R
Sbjct: 1386 VE---------------NPSHQADYVKDEIDRLMALDP--------NLTLADFAVLSRTR 1422

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG--------RFILSQEDDL 435
                 +  +     + Y I  V    F       I  ++           R     E+ L
Sbjct: 1423 VPLANVRSVLEE--SGYPIRTVLEKGFPFHRVREIYTVLEWLGAKEKDNRRASELMEEAL 1480

Query: 436  SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI---HELI 492
              +     P   +   D+F    +   +++                +   + +      +
Sbjct: 1481 KEIRPHGHPNIWWQLIDLFFENHRDETSDSTLPVSHAIDQFHEFMAEQRREKVLGQGIFL 1540

Query: 493  HIAQFCSPHDFFT-LILGAKKGRQQFISRFGNEVI 526
                     +F   +IL    G     + +  E  
Sbjct: 1541 STIHSSKGMEFPHVMILDGDWGGPASRAEWEEERR 1575


>gi|315930994|gb|EFV09969.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 705

 Score =  128 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 144/386 (37%), Gaps = 59/386 (15%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 199 ELRSYCLGLTHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAK 258

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            +++ +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 259 RMELINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 316

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 317 SEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEGVK-KNRTFFYVGDK 375

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 376 KQSIYRFRKGKKELFDLLKQEFSQIKSD--------SLNTNYRSKELLVDFVNETFK--- 424

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 425 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTL------------ 466

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   I+ +            + I   DI +L  K  D  ++    R  K    I
Sbjct: 467 ----ETLFEQINFLRS----------KNISYDDICILCWKNSDADMVLDFLREQK----I 508

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFI 428
                   +L +  +++ ++   ++ 
Sbjct: 509 PAFTQSNVLLENKASVRLVLEYAKYC 534


>gi|301633254|gb|ADK86808.1| UvrD/REP helicase [Mycoplasma pneumoniae FH]
          Length = 529

 Score =  128 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 21/160 (13%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A      Y+     N + DF DLII T  LLK     + +     + +++IL+DE QDT+
Sbjct: 169 AATALRAYQNYLITNNLFDFSDLIIETCHLLKGN---SELLQAFTESVHYILVDEFQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L Q+E+++ L           ++   LF VGD  Q IY + GA  +     K   Q    
Sbjct: 226 LAQYELVKLLA----------TTHPNLFLVGDSNQMIYGWRGAVVEIFELLKNDFQT--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
                        ++RS+  +L V + V +     +  + 
Sbjct: 273 -----VKEFYTTQNYRSSQAVLAVANDVLTAIARKERKAL 307


>gi|153951355|ref|YP_001398782.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938801|gb|ABS43542.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 921

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 159/444 (35%), Gaps = 62/444 (13%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 199 ELRSYCLGLDHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAK 258

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            +++ +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 259 RMELINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 316

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 317 SEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEGVK-KNRTFFYVGDK 375

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 376 KQSIYRFRKGKKELFDLLKQEFGQIKSD--------NLNTNYRSKELLVDFVNETFK--- 424

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 425 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTLEILFE------- 471

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                     I+ +            + I   DI +L  K  D  ++    R  K    I
Sbjct: 472 ---------QINFLRS----------KNISYDDICILCWKNSDVDMVLDFLREQK----I 508

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                   +L +  +++ ++   ++ +  ++   F  +    L  F    I    ++   
Sbjct: 509 PAFTQSNVLLENKASVRLVLEYAKYCIFGDE---FYLVFLKELLGFDPRKIALDFSKNAM 565

Query: 463 TETVYEYIQKFANCGISKFQHVIK 486
              ++   +   +         I+
Sbjct: 566 ENVLFLIKELKLDLNDIALIQFIE 589



 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 112/357 (31%), Gaps = 63/357 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V IM+VH +KGLE   V L+D+ S+  S+     +                 +  ++  
Sbjct: 616 GVSIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEY-DVNQGWQLHIKDKIRELTKEP 674

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LII K +  S             +     
Sbjct: 675 IYTLFKENIIRANYEDDINKLYVAFTRAKESLIIVKRNEESVNGNYPSYFKGGFLNIHSQ 734

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +   S+ K+   A +                                     
Sbjct: 735 ERGYLESKEQILSVKKESIQALQKFEK--------------------------------- 761

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                 + P  I ++ + + +           G   H  +Q +        +       +
Sbjct: 762 ------ITPQEIQSEERLDSKE-------LYFGNAFHFFMQNLKLPKGENFQILTQRCKS 808

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRID 869
           K        +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 809 KFRHFLDESDFEKLFKRIEILLKNTQFQNLIGDGKLLKEQALS--FNGEIKQL------D 860

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 861 LLALKDEEAFIIDYKTG-------LAMQDKHKEQVRTYKIAISEILKKDKVCAFIVY 910


>gi|297242782|ref|ZP_06926720.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
 gi|296888993|gb|EFH27727.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD]
          Length = 519

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 93/271 (34%), Gaps = 63/271 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K  +  +DF D+++    +L+    +A    +I Q I  I +DE QD S +
Sbjct: 200 DIYEAYETEKNAHTCIDFNDILLLCCHILRNFPEAA---NRIKQSIGWITVDEYQDVSPL 256

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E++R                R +  VGD  Q+IYSF GA    +L   +       + 
Sbjct: 257 QHELLRLWMGQ----------NRDICVVGDPAQTIYSFAGANSYYLLSFPQEFAPLGAD- 305

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L   +RST  I+ + ++V +           S     +   +    G V++ 
Sbjct: 306 ------ISLDTDYRSTERIVGLANRVLAA----------SAHKKDYVKVKAATKGGVRVS 349

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           +QV +                             A  +   I+ ++ +            
Sbjct: 350 QQVFATD------------------------VEEALGVVEQIAKLVKSG---------AA 376

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              +  +L R      ++    +  K  Y++
Sbjct: 377 HLGECAILTRTNAQQQVVCKALKVAKLPYRV 407



 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 35/104 (33%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + T+H  KGLE   V+++     +                                  
Sbjct: 441 VTVSTIHAVKGLEFAHVYVIGCSEGLIPFGST---------------------------- 472

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                     S  EE  RL+YV +TRA   L +   S   +   
Sbjct: 473 -------ADDSALEEERRLMYVAITRAEKTLHLSYASRKDSGTG 509


>gi|291333833|gb|ADD93516.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C13]
          Length = 597

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 129/387 (33%), Gaps = 27/387 (6%)

Query: 10  NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
           +ES   +   L P+    V  ++   +   E  NP +++    ++    +     ++  +
Sbjct: 219 DESLFRLEASLQPIAGELVELVDYAANQVPEDKNPQLVELKGIVELPDSSFTGLTQWKTI 278

Query: 70  SSFFLTQKFTPQKNII-TQEINKKSPDLKEKLKKSQDEFIK-------------IRDRFN 115
               +T+    +K+I  TQ   K+    K ++    D                 + D   
Sbjct: 279 VGLMMTKDLKLRKSITKTQGFPKQDQHTKSRMLSLLDWCRDNTDVQEQLSNTLFLPDADL 338

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY---K 172
           +        A   L   L A      K+    D+  + +   D L++      I     +
Sbjct: 339 STSQQTILDALGYLLPTLAAELTMVFKQQEQCDYPAITLAALDALQQSPHDQQITDITLR 398

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +D  + HIL+DE QDTS  Q +++  L   +          RTLF VGD  QS+Y F  A
Sbjct: 399 LDYSLRHILVDEFQDTSGSQMQLLEHLLAGW-----EPDDGRTLFLVGDAMQSLYGFRNA 453

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                L+ ++           +   + L  +FRS   I+  V+  F      +  S    
Sbjct: 454 NVGLFLQAQQH-----PIGPVQCRPLTLSTNFRSQQGIIDWVNSSFGRAFPDRADSARGA 508

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                 ++         +     S  DS+  P+ E+       +  +   S  +  I   
Sbjct: 509 IPYSSSTAHNVLEAGNAVQFFGFSCEDSKDYPEAEAARIAALCVDIQQHHSDQSIAILVR 568

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVL 379
               +              QA DI  L
Sbjct: 569 NRGHLQQIIPALRHADLNWQAIDISPL 595


>gi|315124914|ref|YP_004066918.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315018636|gb|ADT66729.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 807

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 160/444 (36%), Gaps = 62/444 (13%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 85  ELRSYCLGLTHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLYFSAK 144

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            +++ +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 145 RMELINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 202

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 203 SEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEGAK-KNRTFFYVGDK 261

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 262 KQSIYRFRKGKKELFDLLKQEFSQIKSD--------SLNTNYRSKELLVDFVNETFK--- 310

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 311 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTL------------ 352

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   I+ +            + I   DI +L  K  D  ++    R  K    I
Sbjct: 353 ----ETLFEQINFLRS----------KNISYDDICILCWKNSDADMVLDFLREQK----I 394

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                   +L +  +++ ++   ++ +  ++   F  +    L  F    I    ++   
Sbjct: 395 PAFTQSNVLLENKASVRLVLEYAKYCIFGDE---FYLVFLKELLGFEPRKIALDFSKNAM 451

Query: 463 TETVYEYIQKFANCGISKFQHVIK 486
              ++   +   +         I+
Sbjct: 452 ENVLFLIKELKLDLNDIALIQFIE 475



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 112/357 (31%), Gaps = 63/357 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IM+VH +KGLE   V L+D+ S+  S+     +                 +  ++  
Sbjct: 502 GISIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEY-DINQGWQLHIKDKIRELTKEP 560

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LII K +  S             +     
Sbjct: 561 IYTLFKENITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQ 620

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +   S+ K+     +                                     
Sbjct: 621 ERGFLESKEQILSVKKESIQTLQKFEK--------------------------------- 647

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                 ++P  + ++ K + +           G   H  +Q +        +       +
Sbjct: 648 ------ISPQEVQSEEKLDSKE-------LYFGNTFHFFMQNLKLPKGENFQILTQRCKS 694

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRID 869
           K        +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 695 KFRHFLDESDFEKLFKRIEILLKNTQFQNLIGDGKLLKEQALS--FNGEIKQL------D 746

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 747 LLALKDEEAFIIDYKTG-------LAMQDKHKEQVRTYKIAISEILKKDKVHAFIVY 796


>gi|121612796|ref|YP_001001130.1| putative recombination protein RecB [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167006023|ref|ZP_02271781.1| ATP-dependent DNA helicase, UvrD/REP family protein [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|87249602|gb|EAQ72561.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 921

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 160/444 (36%), Gaps = 62/444 (13%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 199 ELRSYCLGLTHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAK 258

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            +++ +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 259 RMELINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 316

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 317 SEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEGAK-KNRTFFYVGDK 375

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 376 KQSIYRFRKGKKELFDLLKQEFSQIKSD--------SLNTNYRSKELLVDFVNETFK--- 424

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 425 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTL------------ 466

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   I+ +            + I   DI +L  K  D  ++    R  K    I
Sbjct: 467 ----ETLFEQINFLRS----------KNISYDDICILCWKNSDADMVLDFLREQK----I 508

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                   +L +  +++ ++   ++ +  ++   F  +    L  F    I    ++   
Sbjct: 509 PAFTQSNVLLENKASVRLVLEYAKYCIFGDE---FYLVFLKELLGFEPRKIALDFSKNAM 565

Query: 463 TETVYEYIQKFANCGISKFQHVIK 486
              ++   +   +         I+
Sbjct: 566 ENVLFLIKELKLDLNDIALIQFIE 589



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 112/357 (31%), Gaps = 63/357 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IM+VH +KGLE   V L+D+ S+  S+     +                 +  ++  
Sbjct: 616 GISIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEY-DINQGWQLHIKDKIRELTKEP 674

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LII K +  S             +     
Sbjct: 675 IYTLFKENITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQ 734

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +   S+ K+     +                                     
Sbjct: 735 ERGFLESKEQILSVKKESIQTLQKFEK--------------------------------- 761

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                 ++P  + ++ K + +           G   H  +Q +        +       +
Sbjct: 762 ------ISPQEVQSEEKLDSKE-------LYFGNTFHFFMQNLKLPKGENFQILTQRCKS 808

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRID 869
           K        +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 809 KFRHFLDESDFEKLFKRIEILLKNTQFQNLIGDGKLLKEQALS--FNGEIKQL------D 860

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 861 LLALKDEEAFIIDYKTG-------LAMQDKHKEQVRTYKIAISEILKKDKVHAFIVY 910


>gi|241762979|ref|ZP_04761041.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241367931|gb|EER62150.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 592

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 83/605 (13%), Positives = 164/605 (27%), Gaps = 137/605 (22%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L   F       ++  ++  + +   D     +  +      R         +       
Sbjct: 115 LPDDFGVATRAERQAALSNAVLRTM-DYAGNPQDWEFRLASYRRSILNRDSVQWQETDPE 173

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           LA  L   YE   +   ++DF+D+ +     L+++    W++  +  +   +++DE QD 
Sbjct: 174 LAG-LVEAYEAELRLRGLIDFDDMPLLAVRALREKP---WLQRALLAKYPVLVVDEYQDL 229

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            L    ++  L           S+   LFAVGD  QSIY F+GA+P+ + R         
Sbjct: 230 GLALHRMVMGLC---------FSAGMRLFAVGDADQSIYGFNGAQPELLRRLSER----- 275

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               +    + L L++RS   I+                                     
Sbjct: 276 ----EDVETVRLRLNYRSGTRIVAA----------------------------------- 296

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                      S    ++  + +   +         +         ++I      +   K
Sbjct: 297 ----------SSVALGEERGYEAAEGAPLGTVFVHAVQGAYPQQARHLIANLLQRAMAGK 346

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             ++ +D+ VL         I            I VV  D   L        LM      
Sbjct: 347 PGLRYRDVAVLYP----AAWIGDSVADAARQAGIPVVRTDGNALY--PRASRLMQWLELC 400

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                                     +      E   ++    +  +      + +I  +
Sbjct: 401 AQWC-------------CGGWRAGDPRFSRLVAEGRRLFAESIRGEDQVGDFHRRLIDGL 447

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             +         H +   +      ++Q I   G   + + DE         + S     
Sbjct: 448 WNVRD--PSLPLHAWLVRL------KEQLIDPLGLGCVSLRDELETLAAFVARTSPEG-- 497

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           +    L               + + + ++H+AKG E  VVFL    +             
Sbjct: 498 DCPGML----LGEMAGDGGGLDRLTLSSLHSAKGREFAVVFLFGMDAGRLPRNDAG---- 549

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                           +    E  RL YVG TRA  ++ +    
Sbjct: 550 --------------------------------RQQLAEARRLFYVGFTRAKSEVHLIHTV 577

Query: 669 NTSNE 673
             +++
Sbjct: 578 GRASQ 582


>gi|288560368|ref|YP_003423854.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
 gi|288543078|gb|ADC46962.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter
           ruminantium M1]
          Length = 855

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 87/665 (13%), Positives = 201/665 (30%), Gaps = 87/665 (13%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           E      +    ++    +    + +   +  L    +      + I D     K  +  
Sbjct: 177 ESLQEYLAEITGKESQIDQKPKVKNLTAMADILLSIKEHIYYNMVDINDILADTKDNERG 236

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                +A  L   YE+  +   + DF  L     + L    + +++      ++  IL+D
Sbjct: 237 K---KIALNLIMEYEKTLRSQNIFDFAMLETEFLNRLSSGKLDSFL-----DDVKVILVD 288

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+L+Q  +   +       ++   +   +  VGD+ QS+Y F GA           
Sbjct: 289 EYQDTNLLQESIYFRIA------ESAIKNGGNITVVGDDDQSLYRFRGASVDLFTNFIER 342

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL-----------SEDST 292
             +     G +   I L  ++RST +I+ + +    + +  Q             + DS+
Sbjct: 343 VSR----IGIEAKEINLKTNYRSTENIIDLCNDFVELDDEYQDARVKEKPKIVFPNLDSS 398

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ--------ESSASI 344
                  S        ++  Q +       + +++      + L +             +
Sbjct: 399 EDTSENESPEDLPNEDEIETQKIPVLGMFRSSEEKLAMDLTNFLDELNRKGKVKRKVKRV 458

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
           L + I   +++               +   +  +++   ++T  I  +           V
Sbjct: 459 LNKDINKKLNSDSEDALESYKKSGFELAQSEGEIIIELDEETGSIDDV--AFLTYSPKEV 516

Query: 405 VGNDR-FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
             N R F       ++ L    R    +  DL  +  +         + I      ++  
Sbjct: 517 THNSRKFPFILKKRLEHLRTPIRVFNPRGQDLQDIESVAV-FCGLMLECIDPNSYYQNSN 575

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA--KKGRQQFISRF 521
           + +    ++  +    K Q  IK ++   H             +       G +      
Sbjct: 576 KKLPRLARRNMSVWRRKAQSFIKDVNPEPHSPISLEDFIIHWQVRQPFNTNGSKDLKWPK 635

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-----------SLQELISELEQYPPTIKRAHSAN-- 568
              ++++  + + +    + +              +     ++                 
Sbjct: 636 EAGLMELAYKLVTWIEEFQDDDEGLVYLKAITQTINQTSFFNKYSSNIVFTSHEAEEESI 695

Query: 569 ---------------------------HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                                       N   IM++H +KGLE P+V + D GS+   + 
Sbjct: 696 NEALMNIFVPIAVGGVKIDENLFEVIPPNRFNIMSIHQSKGLEFPLVIV-DVGSRFKKNT 754

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             +     P   D   I     +     + + +  +  K    ++  RL +V  +RA D 
Sbjct: 755 VRESNLRFPKKADKSSIIQDRIRKY---SSLGESERDSKDRAFDDLTRLYFVAFSRAKDV 811

Query: 662 LIICK 666
           L++  
Sbjct: 812 LLLVG 816


>gi|225155825|ref|ZP_03724312.1| ATP-dependent DNA helicase [Opitutaceae bacterium TAV2]
 gi|224803477|gb|EEG21713.1| ATP-dependent DNA helicase [Opitutaceae bacterium TAV2]
          Length = 1069

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 65/452 (14%), Positives = 127/452 (28%), Gaps = 97/452 (21%)

Query: 6   GLSLNESYELIYKD------LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           GL  ++                P      +  ++   L  +   P     A T  + +  
Sbjct: 500 GLDPDQRAAASIVRGPLLIIAGPGTGKTRTLTHRIAHLIADHDAPPESCLAITFTRRAAG 559

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
           +  E    LL                ++ +      L   + + Q E + +         
Sbjct: 560 EMRERLAQLLPD-----------GRGSRVLVTTFHALGLTILREQQEKLDLGAPLRVAGE 608

Query: 120 FKSTLASLTL-------AKYLNA--------HYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
            ++   +  +       A+ L A         Y +A +   ++DF+DLI  T +      
Sbjct: 609 REAFALAREILGISAADARRLFADRAIPPPPAYTQAMRARGLVDFDDLIALTVE---LLA 665

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +         H+ IDE QD    Q++++  L +         +S  +L A+GD  Q
Sbjct: 666 ADPALAAHYRARWPHVSIDEYQDVDERQYQLVHYLAD-------VENSITSLCAIGDPDQ 718

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           +IY F G + +   + +                ++L  ++RS   I+             
Sbjct: 719 AIYGFRGTDVRFFQQFQTD--------HPGAHTVQLTRNYRSARPIVEAA---------- 760

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                 +         R            +                     L +  +   
Sbjct: 761 ----LQAVAPTTLVRDRALLAQNTDATRLL---------------------LRECGTDRA 795

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRV--------IQAKDILVLVRKRKDTPLITFLTRFL 396
            A  +  TI  +IG  ++ S    R             DI +L R    TP         
Sbjct: 796 EAEFVVETIERLIGGTSLTSFDTGRASGAVVPAHYAFNDIAILYRTDAQTPP----LVEA 851

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                I         L+ H  ++ L+   + +
Sbjct: 852 LTRSGIPFQKRAHGPLSAHPTVQALVTQIKTL 883



 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 75/256 (29%), Gaps = 31/256 (12%)

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTL 506
             +DI  +     +T  + E + +       +          +  L+   +   P      
Sbjct: 832  FNDIAILYRTDAQTPPLVEALTRSGIPFQKRAHGPLSAHPTVQALVTQIKTLPPSPPLAE 891

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
             L         ++R      D L    +      +   + L    SEL            
Sbjct: 892  RLSQA---AAILARADQPDAD-LRPITDALRPLAEKHGADLDAFQSELALGVDVDLHDA- 946

Query: 567  ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                 V ++T+H AKGLE  VVFLV     +  H+                       + 
Sbjct: 947  -RAERVSLLTLHAAKGLEFRVVFLVGCEDGLLPHRF----------------------NF 983

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
            +  +          ++   E  RL +VG+TRA ++L +        + +  +R     + 
Sbjct: 984  ATADASDADTVAKTEADIAEERRLFFVGITRAKERLFLTHARRRHWQGELRERYPSPFLR 1043

Query: 687  DSFHNDERVKKIKLTN 702
            D        ++     
Sbjct: 1044 DIRDTLLDRQREDPPA 1059


>gi|269218750|ref|ZP_06162604.1| helicase, UvrD/Rep family [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211861|gb|EEZ78201.1| helicase, UvrD/Rep family [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 1079

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 105/972 (10%), Positives = 252/972 (25%), Gaps = 174/972 (17%)

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI--RDRFNTYK 118
               E  +LLS      +   +      +  ++    + +++       ++    R     
Sbjct: 108  SGPEEDALLSDILADPEAGVEFPDFVDDDLRRQRGFRAQMRDLLTRACELGLSPRRLEDL 167

Query: 119  MFKSTLASLTLAKYLNAHYEEAKKKNCVL----------DFEDLIINTNDLLKKRDVSAW 168
              +           L   YE        L          D   L+     +L+  + +  
Sbjct: 168  GREHGEPMWVAGGQLLGLYEGVTTARDALAGAADAPDRLDHAHLVGAATAILRDWEANVP 227

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                     + ++++++ +       ++  L  D            ++   GD   ++  
Sbjct: 228  -GPHPRPRWDWVIVEDIHNAPRSVLGLLAELAAD----------GASVVTTGDPDCAVQG 276

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            F G                    G     + L    R    I  V D +        G  
Sbjct: 277  FRGGVASLPGDV-----AAPAPRGLGSRTVALRQRHRGGPKIAGVADALAEAVRVGGG-- 329

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                      + R       +  + V ++                             R 
Sbjct: 330  ----------AVRQRNPKAAERPDSVSAR-----------------------------RF 350

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            +            +      R I   ++ V+ R R   P      R       + V    
Sbjct: 351  VHPEEEAAAIARAVREARLLRGIPYSEMAVVTRSRSTHPG----LRAALVRRGVPVGQIG 406

Query: 409  RFI-LTDHLAIKDLMALGRFILSQEDDLSF-VCMLKSPLFNFSEDDIFKICT-------- 458
                L +  A+  L++L R  L +    +  V +L  PL       + +I          
Sbjct: 407  TDRPLREEPAVDALLSLVRLALDRAFGSAELVRVLTGPLVGIDPLRLRQIGRILRGGELA 466

Query: 459  ---QRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCS--PHDFFTLI 507
                R E+E +    +      + A  GI       + +  +   A+  +    +     
Sbjct: 467  RGGSRSESELLSLAAEGPSRLSEVAPKGIGDLLRAARMLETVREAAERSNRQAEEVLWAA 526

Query: 508  LGAKKGRQQF---------ISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQY 557
              +    +++              +  +D + +      R         +  ++ EL+ +
Sbjct: 527  WESSGKAEEWRKAALRGGTAGDAADSALDSVIQLFRVAQRMADRDVDVPVDAVLDELQTH 586

Query: 558  P--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                       A    V + T +++ G +   V +      ++ +  ++  +        
Sbjct: 587  DLPEDSIARAGAAAQTVTLTTPNSSIGRQWEFVVVAGLQDGLWPNMRLRDAYT----ATG 642

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC---------- 665
                I   +            +   +   ++  R L+  +TRA+ +L++           
Sbjct: 643  RLAQIVTGRDPGAGADGLAGRRQAYEEILDDELRQLHHAVTRANGELLLTCADSEEARPS 702

Query: 666  -------------------------------KHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                                              + +  +  +     D V  +     R
Sbjct: 703  RFFELMGFVPEELQDAASAGRQGSGDARQSGGSPDVAGAQSPSAALDSDGVRHAAAASGR 762

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            +       +  + + +              E EE + +L +         +  +     P
Sbjct: 763  LVLESPRAAEGELDVVGLVADIRRSGAGGREAEEVLARLREAGFRQADRCTWAEALEPTP 822

Query: 755  YI---------LNPSTIDTKGKTNLE--------SLLSDNQTFNRGLIIHKLLQVIFTLP 797
                       ++PS ++T     L             D +T + G ++H + +      
Sbjct: 823  SRGIEAGGTVVVSPSRVETMLDCPLRGFLSLVGAEDSDDRRTADIGTLVHAIAERSAGAS 882

Query: 798  EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE--NPMMTTAMSCDSYSEVSVSGKI 855
              +      +      K       +        L+E     +         +EV     +
Sbjct: 883  REEIMGDFEASWAAFDKPEDPVAAQAEYARARILVEGLASYLEDFARGGGSAEVERRISV 942

Query: 856  NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
            +     +++SG+ID++        I ++KT  H    +         QL +Y+  +  S 
Sbjct: 943  DMED-GVVLSGKIDRVEHDGAARRIVDFKTGKH---TVSAKQAEDNVQLQLYQWAMGKSG 998

Query: 916  PNKSLVCLLIYV 927
                    L+Y+
Sbjct: 999  LPADGGAALVYL 1010


>gi|303231697|ref|ZP_07318420.1| putative ATP-dependent nuclease subunit B [Veillonella atypica
            ACS-049-V-Sch6]
 gi|302513646|gb|EFL55665.1| putative ATP-dependent nuclease subunit B [Veillonella atypica
            ACS-049-V-Sch6]
          Length = 1176

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 123/1011 (12%), Positives = 263/1011 (26%), Gaps = 226/1011 (22%)

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-- 126
            L S  + +K      +       +   + + L      F    D   +     S      
Sbjct: 96   LLSLVMKRKGNELGLLSQAAKRPEFSSVLQGLFSEFRSFRIGPDELESGADRVSNGVLQK 155

Query: 127  -LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             L       + YEE  + +  +D  D I++    L +  +             H+ +D  
Sbjct: 156  KLRELALCMSAYEEELQLHGQID-GDPIMDLVHALPQSPLMENC---------HVFVDGF 205

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
               + + +E++  L +                        I     A+PKR+L       
Sbjct: 206  HWFTPVHFELLYMLFDLAVESV------------------ITVDLPADPKRILANTGHYG 247

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                               RS  +IL                      + +H +   G  
Sbjct: 248  IFN----------------RSV-EILE-----------NLYKEYGKKLSFQHFTGHKGTP 279

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                L E       +  +      ++Y             A  +A  I + I ++     
Sbjct: 280  VLQSLEENFFHGKRNTTDEHIPLVSAYN--------REREADWVARDILSYIESNP---- 327

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                  + +DI +++R   ++         +   Y I   G+ +  + +H   + +  L 
Sbjct: 328  ----NARYRDICIMLR---ESETYGDTLEKVFTRYGIPHFGDRQRPMNNHPLGELMTDLL 380

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF---- 481
              +           +LK+ L   S + + ++     E    +   ++     + +     
Sbjct: 381  GIVKHSYSRDIMFRLLKTDLTPLSREAVDELENYVLEFGIDHLQWERDNWSYMRRVTGLS 440

Query: 482  -----------------QHVIKYIHELIHIAQFCSPHDFFTL------ILGAKKGRQQFI 518
                             Q ++  +      A     H           +L A +  Q+  
Sbjct: 441  DEEQPDAPRHERVNASRQAIMDILIPWFDFAASSDAHTGAEWCKHIYTVLEALQVPQRLY 500

Query: 519  S-RFGNEVIDVLDE-------------FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                  E    L+              FL+  +        +L E+I+ LE+    +  +
Sbjct: 501  EWSLEAERDGDLESKASHEQMYNAVIGFLDEMMVLTDTETLTLDEMIALLEEALDNVHYS 560

Query: 565  HSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  + V I T+  A     P V+++     VF                     +   
Sbjct: 561  MIPPSLDHVVITTIERAYSQSWPRVYVMGLNQGVFPQNM-------------GDEGLIKD 607

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
            + +        ++           N LLY+ MTRA + L I    +    +         
Sbjct: 608  REREALAEAGIVLAEGALPKAFNENFLLYLAMTRAEEYLTISYAGSNDEGEGLESSL--- 664

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
            ++            I++  +I       Y W  +   +   ER   +   +    +   L
Sbjct: 665  VIKRLQSLGFCTSPIEVPFTIQDGTEDEYLWRPYQSLSLLSERWGALFSGVPVSPLWWGL 724

Query: 744  FSPIKNDINEPYIL---------------------------------NPSTIDTKGKTNL 770
            ++  + D      L                                 + + ++   +   
Sbjct: 725  YNWARYDAAYRPRLEDVSRGIRDNNDVPVIAPELVNGLFLKRGYMSGSVTRLEKYRQCPF 784

Query: 771  -----------ESLLSDNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKN 812
                          +        G  +H  L+ +               +      C + 
Sbjct: 785  KFYAQYGLKLEPRKVRSFGAPEIGTFLHANLERLGTQLLSEHKQWRDLDETAQQELCARV 844

Query: 813  AKLWPAKEY----------KNLLLSITRLLEN--PMMTTAMSCDSYSEVSVSGKINCP-- 858
            A     +            K +   + R L+     +    S  S+  + +      P  
Sbjct: 845  AADILEENRYDEDEKTAYDKAIEERVVRTLQKTVSRLVDWSSRSSFDTMYLEQDFGRPNG 904

Query: 859  --------KKDIIIS--GRIDQISIS--QQNIF--IFEYKTHHHVPQEIEHIPYTHIAQL 904
                      D  +   G+ID+I       + +  + +YK+        + I Y    QL
Sbjct: 905  WDSIKVSLGDDRYLRLVGQIDRIDEYNRDGHTYGMVIDYKSGST-SVNAQEIYYGLKLQL 963

Query: 905  SIYEKILKDSYPNKSLV----CLLIYV-----SEPKVFIIPQNKLNKAFAE 946
              Y   L+ +Y            ++Y        P    +   +  KA A+
Sbjct: 964  MTYLLALESAYKKHHDQPMTPAAVVYTYVKNPRTPAGEPVSYEE-AKALAD 1013


>gi|92113735|ref|YP_573663.1| UvrD/REP helicase [Chromohalobacter salexigens DSM 3043]
 gi|91796825|gb|ABE58964.1| UvrD/REP helicase [Chromohalobacter salexigens DSM 3043]
          Length = 729

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 86/660 (13%), Positives = 161/660 (24%), Gaps = 127/660 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
             +   L +  +  + E     +          T           AH+E     + V+ +
Sbjct: 138 ADRLETLAQFCELVKAEMRTPEELHERLDFGDDTQHFCEA----YAHFETLIADHGVMTY 193

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            DL+      L   + +   R ++   ++H+++DE QD + +Q  ++  L          
Sbjct: 194 ADLLYRPLRCL---EATPEARARVQGFLDHVIVDEYQDINEVQQRLLAILAG-------- 242

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 + AVGD  Q IY + GA P  +         R            L  +FR    
Sbjct: 243 --KRAQVMAVGDANQCIYEWRGARPDAMFE-------RFGALFGTAHDYPLSYTFRHGHV 293

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           +    +                                                P Q   
Sbjct: 294 LALAANHAIRANRRR---------------------------------------PDQLCL 314

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
            +      +   A   A  +   +                     +  V+VR    +  +
Sbjct: 315 AAPGTPTTRADVAVGNAALL-EALREWQQAGRAL----------SETCVMVRSWALSVSV 363

Query: 390 TFLTRFLKNDYKISVVGNDRFIL-TDHLAIKDLMALGRFILSQ---EDDLSFVCMLKSPL 445
                       +                ++ L              D      +L  P 
Sbjct: 364 QLQL----LRAGVPFRLAREDRFVFRLPLVQALAGYLALARDGNRLHDPEQLNLLLSQPT 419

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISK----FQHVIKYIHELIHIAQFCSPH 501
                + +  +  Q   T+   E      +          +   + + EL  +  +  P 
Sbjct: 420 VFVPRETLTALARQLAHTQQWPERHDPLLSALKPLQRRNLKRRWQLLCELPRLGHW-PPA 478

Query: 502 DFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                ++ A +  +            +     L+  +       +     I  L Q    
Sbjct: 479 KLLEHVVEATEADKALKRAASRRAKAEDDVRLLDVLIEQAGELANDPDAFIELLSQ---- 534

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                    + V + TVH AKGLE P+V L     + F H   +                
Sbjct: 535 ---PVEGRGDGVLVTTVHGAKGLEWPLVALWGVNEEDFPHYTRETPL------------- 578

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                   EE  RL YV +TRA ++L++          +    T
Sbjct: 579 -------------------DAERLEEERRLYYVAITRARERLLVLHDGGDHRPSRFIDET 619

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
            +D  + +           L     +      E        T +E   T      E    
Sbjct: 620 AWDDCHRAAAALGEAPFESLAVRAPEVVGPYLERCGVRLPVTRVEESATAATRHWEVGQW 679


>gi|224823759|ref|ZP_03696868.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
 gi|224604214|gb|EEG10388.1| UvrD/REP helicase [Lutiella nitroferrum 2002]
          Length = 586

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 67/400 (16%), Positives = 121/400 (30%), Gaps = 45/400 (11%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMET--------GNPTILKKAQTLQQAS 57
            L+            W         +   + L   T        G        + L+Q  
Sbjct: 209 ALTPLADSLAAADAAWQRLAGDAELVRGGLELLAATEGFKANIYGPAQQQTLVRRLRQW- 267

Query: 58  QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
                +    LLS     +        + + + K        L  +   ++   D     
Sbjct: 268 ---TADSGLPLLSGDDRKRLDKLTPPALAKGMKKGYAAPSHPLFDAVAAWLGAWDAHLAN 324

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                    L L  +++A     +       F+DL+ +    L+  D    +   + +  
Sbjct: 325 VAAHVAALKLELIAWVDAELARRRASERTRSFDDLLTDLAAALEHPDSGPLLAEHVARSF 384

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
              LIDE QDT  +Q+ + R+                 LF VGD KQ+IYSF GA+    
Sbjct: 385 KVALIDEFQDTDPVQYSIFRACF---------VGRDCPLFLVGDPKQAIYSFRGADIFAY 435

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L  +              S   L  + RS   ++  V+ +F+  E    L++     +R 
Sbjct: 436 LSARDD----------AASHYTLDTNRRSAEPLVAAVNALFAR-EQPFVLADIDYPAVRA 484

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             S          W   V    +    Q   + +      ++ +    A   A  I  ++
Sbjct: 485 APSSG--------WRLEVDDGRAPLTFQWLDFAATPKGASKQLAMDNAAEASADEIVRLL 536

Query: 358 -----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                G   +    ++R +   DI VLV   +    +   
Sbjct: 537 TLAGEGRARLVGEQRERALVGGDIAVLVATHRQGERVRQA 576


>gi|226358114|ref|YP_002787853.1| ATP-dependent nuclease subunit A (AddA),; UvrD/REP helicase,;
           ATP-dependent exoDNAse (Exonuclease V) beta subunit
           (RecB) [Deinococcus deserti VCD115]
 gi|226319757|gb|ACO47751.1| putative ATP-dependent nuclease subunit A (AddA),; putative
           UvrD/REP helicase,; putative ATP-dependent exoDNAse
           (Exonuclease V) beta subunit (RecB) [Deinococcus deserti
           VCD115]
          Length = 406

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/408 (14%), Positives = 126/408 (30%), Gaps = 40/408 (9%)

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           S+ + ++ L +       A S   + V++MT+H +KGLE PVV + D        +    
Sbjct: 3   SVADHLNRLARLSAQEAEAISPLPDAVQLMTIHGSKGLEFPVVIIADV------LRQGGG 56

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                  + + G+ + +P  +      + L    K+    E  R+ YV  TRA+D LI+ 
Sbjct: 57  RTPPVRFDVEQGVALRLPLLEGDAPEWTALETLAKEQEGSEAERVAYVAFTRAADLLILS 116

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP-- 723
                  + +     +   + +     + +    +         +            P  
Sbjct: 117 ATGGDKGKAQERFAAFVASLPEEGVERQYLTPQDVVPVAPLPLRLDGARLILEVRTGPGV 176

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
           +         +       ++F+    +   P     S    +  +N E           G
Sbjct: 177 VLPGSLPVTSLGTYLQCPRMFAYRHLEGRLPLAQLWSERQAEEASNPER---RAAGRQIG 233

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
             +H+ L+            +      +    +   + K ++  +  + E          
Sbjct: 234 DAVHRALEH----------GWTAKDMQERLPYFSEPDLKTVIGLVQAM-EGETYAPLHGR 282

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
               E  +   I      +   G +D     ++   + +YKT        E  P  H+ Q
Sbjct: 283 TFERERPLQVTI----GPVTFEGIVDAY--DREQRLVLDYKTDR------EVHPEDHLPQ 330

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           L++Y   L            L Y+   ++ +     L +    +   +
Sbjct: 331 LALYAHHLGAR------EAALAYLRHKRLHLFGPEDLARGLDTVHAAV 372


>gi|56808112|ref|ZP_00365901.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains)
           [Streptococcus pyogenes M49 591]
          Length = 253

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/283 (22%), Positives = 114/283 (40%), Gaps = 36/283 (12%)

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++DE QD + +Q  ++  L           S+    F VGD KQSIY F  A+P+   ++
Sbjct: 1   MVDEYQDNNHMQERLLTLL-----------SNGHNRFMVGDIKQSIYRFRQADPQIFNQK 49

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            R  QK+         +I L  +FRS +++L V + VFS   +      D     +H+  
Sbjct: 50  FRDYQKKPEQ----GKVILLKENFRSQSEVLNVSNAVFSHLMD--ESVGDVLYDEQHQLI 103

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                 TV   ++         +  ++   +  DS     S   +   +A  I  +    
Sbjct: 104 AGSHAQTVPYLDRRAQLLLYNSD--KDDGNAPSDSEGISFSEVTI---VAKEIIKLHND- 157

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIK 419
                   + +  +DI +LV  R        +     N Y I +V +         + + 
Sbjct: 158 --------KGVPFEDITLLVSSRT----RNDIISHTFNQYGIPIVTDGGQQNYLKSVEVM 205

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            ++   R I +  +D + V +L+SP+F F EDD+ +I  Q+  
Sbjct: 206 VMLDTLRTINNPRNDYALVALLRSPMFAFDEDDLARIALQKDN 248


>gi|67639475|ref|ZP_00438329.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei GB8 horse
           4]
 gi|238520023|gb|EEP83487.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei GB8 horse
           4]
          Length = 752

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/670 (11%), Positives = 183/670 (27%), Gaps = 118/670 (17%)

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           M G            + A  I VLV+  +   L+  +       + I  V   +  +   
Sbjct: 28  MRGARERAVTLGGEPLAASGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFAT 83

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
           +  + L  +   I +  D       L S  F      ++++     E + +    +  + 
Sbjct: 84  IDAEQLERVLAAIDAPGDLRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAAARGASG 143

Query: 476 CGISKFQHV----------------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
            G                       ++       + +       +  + G  +  ++ ++
Sbjct: 144 NGGGARAASAGAPAPSPADADAMGWVERFSRYRLLWRERGFAVMWRTLAGELRIAERLMA 203

Query: 520 RFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRI 574
               E      + L E        +     +L+ L +  LE      +    ++ N V+I
Sbjct: 204 GADGERRVTDVNHLAELTQARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQI 263

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           +TVH +KGLE  +VF                +      +D+ G  +        +     
Sbjct: 264 VTVHKSKGLEYAIVFCPFLNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAER 321

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHND 692
             +   +    E  RL+YV +TRA  +  +    + ++ + K++ +     +V  +  + 
Sbjct: 322 ASREAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDF 381

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           +   K    ++   + W A           P+           + +  +      +   +
Sbjct: 382 DAWLKEPPEDAELAERWQALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRD 441

Query: 753 EPYILNPSTIDTK----------------------------------------------- 765
              I + S++ +                                                
Sbjct: 442 AWRIASFSSLASAIARDESGIARAADDEMRPDHDALAAALGADALEPPDAAAAIAPAPAA 501

Query: 766 --GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
              +   + +L+  +    G  +H+LL++                  +          + 
Sbjct: 502 APRELAEDDILAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAER 561

Query: 824 LLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII----------- 863
           L   +TRL+ +           +         +E+           + +           
Sbjct: 562 LPAMMTRLVADLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPD 621

Query: 864 -----------ISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQ 903
                      + G ID I       +I ++K++H             +     + +  Q
Sbjct: 622 VALEAGTLAGFVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQ 681

Query: 904 LSIYEKILKD 913
             +Y   L  
Sbjct: 682 ALLYMVALHR 691


>gi|54026506|ref|YP_120748.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
 gi|54018014|dbj|BAD59384.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152]
          Length = 716

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 80/650 (12%), Positives = 167/650 (25%), Gaps = 169/650 (26%)

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
           +T   L+       +  +        ++DE QD + +Q  V+ +   +            
Sbjct: 206 HTAAALEDFPA---VADEFRGRYRSFVVDEYQDVTPLQQRVLDAWLGE----------RD 252

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            L  VGD  Q+IYSF GA P  +L   R             +++ L   +RST  ++++ 
Sbjct: 253 DLTVVGDANQTIYSFTGATPSYLLDFSRRFP--------DATVVRLERDYRSTPQVVSLA 304

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           ++V             + T ++    R                                 
Sbjct: 305 NRVIGAARGR-----IAGTRLQLVGQRPDGPEP--------------------------- 332

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
              +   A   A  +A  I  ++   T             +I VL R    +        
Sbjct: 333 EFAEYDDAPAEAAAVAAKIERLVAAGTP----------PAEIAVLYRINAQSEAYEQALA 382

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  I               ++  +   R   S++D  +            +   + 
Sbjct: 383 E----RGIPFQVRGGEGFYQRAEVRQALGALRQAASRDDLPAEAR---------TGAALV 429

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
           ++         +            ++ +     +  L+ + +    HD     L      
Sbjct: 430 RLVRAA-----LAPVGLTATEPAGAQARERWASLTALVTLTEELVAHD---AALDLTGLL 481

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           ++  +R                   E     ++Q                       V +
Sbjct: 482 RELAAR------------------AEARHPPTVQG----------------------VTL 501

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            ++H AKGLE   VFLV          H                            +++D
Sbjct: 502 ASLHAAKGLEWDAVFLVGLTDGTLPIAH----------------------------VLAD 533

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                  +  EE  RLLYVG+TRA + L +    + +   + ++R    +      +   
Sbjct: 534 DGSVADVAALEEERRLLYVGVTRAREYLRLSWSLSRTEGGRRSRRRSRFLNGLVPDDSPA 593

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            +        ++               T                + +    P + D +  
Sbjct: 594 SRVAAPAMRPSEVNRPRCRVCAKPLIGT------------YATMLGRCRRCPAEVDADLL 641

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
             L     +  G+  +   +           +  + + +           
Sbjct: 642 AALREWRAEKAGELGVREFVVFTD-----TTLTAIAEQLPADDRALAGIA 686


>gi|302521801|ref|ZP_07274143.1| ATP dependent DNA helicase [Streptomyces sp. SPB78]
 gi|302430696|gb|EFL02512.1| ATP dependent DNA helicase [Streptomyces sp. SPB78]
          Length = 439

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/373 (13%), Positives = 111/373 (29%), Gaps = 53/373 (14%)

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT H AKGL+  +V +      V+     +   +        G+   +            
Sbjct: 1   MTAHRAKGLQWRLVVVAGVQEGVWPDLRQRGSLLEADRIGSDGLAEPLTPG--------- 51

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFHNDE 693
                  +   E  RL YV  TRA+D+L++      + +     R   ++ V        
Sbjct: 52  -------ALLAEERRLFYVAATRAADRLVVTAVKAPAEDGDQPSRFLTELGVEPRHLTVR 104

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK----- 748
             + + +   + +      +            R       + +      + +        
Sbjct: 105 PRRPLAVPALVAELRATTVDPHASPALREAAARRLARLAALTDGDGRPLVPTAHPGTWWG 164

Query: 749 -----------NDINEPYILNPSTIDTKGK---------TNLESLLSDNQTFNRGLIIHK 788
                       D  +P  L+ S +                + +    +     G ++H 
Sbjct: 165 LADETVNEVPVRDPAQPLALSASALGQLVDVCALQWFLGREVRAEAPASTAQGFGNVVHV 224

Query: 789 LL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
           L  +V            +            +A    A+E +N   ++ R L   ++    
Sbjct: 225 LADEVATGRSPADLDVLMERLDTVWDGLAFDAPWKSAQERENARAALERFLRWHVLDRTG 284

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTH 900
                SE      +     +I I G +D++        ++ ++KT  + P   E     H
Sbjct: 285 RTPVASEHPFDVTLPAGDHEIRIRGTMDRVDADAAGRAYVVDFKTGKNAPTADEV---DH 341

Query: 901 IAQLSIYEKILKD 913
             QL++Y++ + +
Sbjct: 342 HPQLAVYQRAVAE 354


>gi|121610604|ref|YP_998411.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
 gi|121555244|gb|ABM59393.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2]
          Length = 621

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 82/551 (14%), Positives = 161/551 (29%), Gaps = 132/551 (23%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   Y+E  +++ V+D +D++++TN  + +  +S           + +LIDE QDT L
Sbjct: 170 AELARMYQEILRRHGVIDLQDIVLHTNRAIAEGVISPL-------PCDCLLIDEYQDTDL 222

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E               H    TL AVGD+ QSIY F  A      +      ++   
Sbjct: 223 AQYEWSML-----------HRQASTLTAVGDDDQSIYGFRRA---LGYKGMTDFARQLNA 268

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L +++R  A++L    ++ +        +  +              G V L
Sbjct: 269 -----QAIVLGMNYRCHAEVLAPAARLIACNMQRMAKALLAHK----------GAGGVAL 313

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W                          + +S    A+         +             
Sbjct: 314 W-------------------------ERYASRQREAQVCCERARKSLAAG---------- 338

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              + + VL R  K    +          +++    ++   +     +   +A    +L 
Sbjct: 339 ---RSMGVLARTNKRLDDMEVQ----CLKHRVPYTRSEGGSVLKSHEMAVFLAALSALLG 391

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE-----TVYEYIQKFANCGISKFQHVI 485
            +     V +         ED++  +                      +      +  V 
Sbjct: 392 MDARDGDVLLA---WCGVGEDELKALHAAHGADLLQPKSKAALAGVDLSPNARKAYAQVQ 448

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNS 543
           +   E   +    +       +LG          +     ++++ E  +       +   
Sbjct: 449 RRFEEWGQLLAAGAVAYVLDKLLGLLIEHTD--DKRSVAALEIVCEVFSKPVGGAGDDGV 506

Query: 544 YSSLQELISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                ++ + +++         +      N V ++T H AKGLE   V+L+      F  
Sbjct: 507 VDGTVQMRARVQRTKDMSAQPDKDKKPEGNPVVLLTAHGAKGLEWDEVWLLGAEEGRFPD 566

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                  + S+ +E  RL YV MTRA  
Sbjct: 567 ---------------------------------------EASSIQEERRLFYVAMTRART 587

Query: 661 QLIICKHSNTS 671
            LII      +
Sbjct: 588 TLIISAAGKAA 598


>gi|28493484|ref|NP_787645.1| DNA helicase II [Tropheryma whipplei str. Twist]
 gi|28572404|ref|NP_789184.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27]
 gi|28410535|emb|CAD66921.1| putative ATP-dependent DNA helicase [Tropheryma whipplei TW08/27]
 gi|28476526|gb|AAO44614.1| DNA helicase II [Tropheryma whipplei str. Twist]
          Length = 585

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 92/295 (31%), Gaps = 33/295 (11%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ L   YE+ K    ++DFED++  T  +L    V      ++       LIDE QD S
Sbjct: 168 ARTLMLAYEDVKNNRRLIDFEDILSLTVGMLS---VQPRAVARVRDRFRVFLIDEFQDVS 224

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q+E++R                R +  VGD  Q IYSF GA        KR    +  
Sbjct: 225 PLQFELLRIWLG----------RRRDICVVGDPNQCIYSFAGA--------KRDYLVKFA 266

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           +       + L  ++RS  +I+ +   +        GL + +    R+ +          
Sbjct: 267 DYFPGAREVFLSRNYRSRPEIVCLSRHIIDSHSPDIGLYQPTEGISRNYADTKTATPAQD 326

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT--ISNMIGTDTIFSNGK 367
           +     ++    C     +  +               R   +   I  M          +
Sbjct: 327 MRVNAGNRAKCHCTAPPGTKGAVRCGNSDLGYRETPIRWHTFENQIQEMH------FIAQ 380

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                ++   VL R       +        +   I     +  +  +    +   
Sbjct: 381 SLKNISQSCAVLYRTAIQGERLAKYL----HTSGIIYRSQESRLFHETDVAQIAC 431


>gi|86151975|ref|ZP_01070188.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85841083|gb|EAQ58332.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 921

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 82/444 (18%), Positives = 160/444 (36%), Gaps = 62/444 (13%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 199 ELRSYCLGLTHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLYFSAK 258

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            +++ +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 259 RMELINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 316

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 317 SEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEGAK-KNRTFFYVGDK 375

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 376 KQSIYRFRKGKKELFDLLKQEFSQIKSD--------SLNTNYRSKELLVDFVNETFK--- 424

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 425 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTL------------ 466

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   I+ +            + I   DI +L  K  D  ++    R  K    I
Sbjct: 467 ----ETLFEQINFLRS----------KNISYDDICILCWKNSDADMVLDFLREQK----I 508

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                   +L +  +++ ++   ++ +  ++   F  +    L  F    I    ++   
Sbjct: 509 PAFTQSNVLLENKASVRLVLEYAKYCIFGDE---FYLVFLKELLGFEPRKIALDFSKNAM 565

Query: 463 TETVYEYIQKFANCGISKFQHVIK 486
              ++   +   +         I+
Sbjct: 566 ENVLFLIKELKLDLNDIALIQFIE 589



 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 112/357 (31%), Gaps = 63/357 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IM+VH +KGLE   V L+D+ S+  S+     +                 +  ++  
Sbjct: 616 GISIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEY-DINQGWQLHIKDKIRELTKEP 674

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LII K +  S             +     
Sbjct: 675 IYTLFKENITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQ 734

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +   S+ K+     +                                     
Sbjct: 735 ERGFLESKEQILSVKKESIQTLQKFEK--------------------------------- 761

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                 ++P  + ++ K + +           G   H  +Q +        +       +
Sbjct: 762 ------ISPQEVQSEEKLDSKE-------LYFGNTFHFFMQNLKLPKGENFQILTQRCKS 808

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRID 869
           K        +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 809 KFRHFLDESDFEKLFKRIEILLKNTQFQNLIGDGKLLKEQALS--FNGEIKQL------D 860

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 861 LLALKDEEAFIIDYKTG-------LAMQDKHKEQVRTYKIAISEILKKDKVHAFIVY 910


>gi|302668932|ref|YP_003832757.1| ATP-dependent DNA helicase UvrD/REP family protein [Butyrivibrio
           proteoclasticus B316]
 gi|302397272|gb|ADL36175.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 924

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 86/576 (14%), Positives = 174/576 (30%), Gaps = 144/576 (25%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 R   Y      +A + + K L   Y +      ++++ D  I    + +  D S
Sbjct: 464 ITASDVRDAAYNCDVPDVALMEVIK-LYPLYAQQLMDRNLIEYVDQEILPFQVFESVDPS 522

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                 +     HI++DE QD++  Q E+++ L         T  + ++L  VGD+ Q+I
Sbjct: 523 YLNNRFL---FKHIIVDEFQDSNEGQIELLKIL--------KTLPTFQSLMVVGDDSQAI 571

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           + F    P+ ++             G++   I L  + RST +I+   +K+ S+ +    
Sbjct: 572 FGFRETSPEYIINFASYI-------GEQVQDIFLVENHRSTPEIIEFANKLNSLNKEKVE 624

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                       ++R    G V                    + S  D            
Sbjct: 625 KD--------LVATRPSGAGVV-----------------VNGFYSRDDEYD--------- 650

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I  +I   +              + + I V+   + +   +        + +K+  V 
Sbjct: 651 -WIVQSIKQQLDNGR----------RPEQIAVIAYTKAELQRLADAL----SKHKLPTVL 695

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                L  +  I+ +++  R +    D    +    + +     D   +   Q  +   V
Sbjct: 696 LAPEKLMTNSRIRAILSFVRVLGDSADTKDALIAANAVVGGCIMDLPNQKIQQLVDNIIV 755

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
                + A    +K   ++K+I  +                                   
Sbjct: 756 RAENIRNAASLAAKKDGLMKFIDSIAM-------------------------------DD 784

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           + +  F       E   Y  + +   +   Y    +    +N+  + + T H++KGLE P
Sbjct: 785 ETVQAFKESL---ETKEYGEILQYCIDFSLYGEDTEYRRVSNYPGIVLTTAHSSKGLEWP 841

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VV+                                           +      +    EE
Sbjct: 842 VVY------------------------------------------NTVTRYQTQARVSEE 859

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
             RLL+V  TRA D+L I        + ++  +  Y
Sbjct: 860 TRRLLFVSATRARDELYISGTYAAFGKGENLVKNHY 895


>gi|1732313|gb|AAB38741.1| ATP-dependent nuclease homolog [Listeria monocytogenes]
          Length = 330

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/253 (20%), Positives = 100/253 (39%), Gaps = 24/253 (9%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNP--------TILKKAQTLQQASQTQCIEERFS 67
           I +D+        + +   +  + E   P          L + + + + S      +   
Sbjct: 77  IKEDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWN-SWGQLKK 135

Query: 68  LLSSFFLTQKFTPQ-KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKST 123
            + S    +  T + K+   +E  +++   ++  KK           R+  N     +  
Sbjct: 136 AIESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEKM 195

Query: 124 LA----SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                    L K    ++ E K++  VLDF DL      +L K + ++ +     ++   
Sbjct: 196 KPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQFKE 255

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +LIDE QDT+++Q  ++R +T       N+      LF VGD KQSIY F  AEP   + 
Sbjct: 256 VLIDEYQDTNMVQETILRLVT-------NSGEEQGNLFMVGDVKQSIYRFRLAEPTLFMT 308

Query: 240 EKRINQKRATNAG 252
           + +  Q+    +G
Sbjct: 309 KYQTYQQDGNGSG 321


>gi|330859830|emb|CBX70162.1| ATP-dependent DNA helicase rep [Yersinia enterocolitica W22703]
          Length = 361

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/385 (14%), Positives = 120/385 (31%), Gaps = 54/385 (14%)

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             + ++   +  Q  D  +L R    + L       L    +I    +          IK
Sbjct: 16  GELIAHHFVKKTQYSDYAILYRGNHQSRLFEK----LLMQNRIPYRISGGDSFFSRPEIK 71

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFA---- 474
           DL+A  R + +Q+DD +F+ ++ +P        I K+        ++++           
Sbjct: 72  DLLAYLRVLTNQDDDSAFLRIVNTPKREIGSATIQKLGEWANVRNKSLFRASFDLGLGEH 131

Query: 475 --NCGISKFQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKGRQQFISRFGNE-VIDV 528
               G+   Q    ++  +I + +        D    I       +   S    E  +  
Sbjct: 132 LKGRGLESLQRFTHWMEGIIRLVEREPIAAVRDLIHGIDYESWLFETSPSPKAAEMRMKN 191

Query: 529 LDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
           ++   ++        E N   +L ++++         +       ++V++MT+H +KGLE
Sbjct: 192 VNLLFSWMTEMLEGSELNEPMTLTQVVTRFTLRDMMERGESDEELDQVQLMTLHASKGLE 251

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            P VFLV     +  H+                                       +   
Sbjct: 252 FPYVFLVGMEEGLLPHQSSID-----------------------------------EDNV 276

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           +E  RL YVG+TRA  +L            +  +      + +   +D + +  +   S 
Sbjct: 277 DEERRLAYVGITRAQRELFFTLCKERRQYGELIRPEPSRFLMELPQDDLKWENERKAVSP 336

Query: 705 NKDEWIAYEWSTHHPENTPLEREET 729
            +          +        ++  
Sbjct: 337 EERMQKGQSHLANIRAQLANAKKPQ 361


>gi|86149295|ref|ZP_01067526.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86152901|ref|ZP_01071106.1| putative helicase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88596029|ref|ZP_01099266.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|85840077|gb|EAQ57335.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85843786|gb|EAQ60996.1| putative helicase [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88190870|gb|EAQ94842.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|284926688|gb|ADC29040.1| putative recombination protein RecB [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315930547|gb|EFV09587.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 921

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 143/386 (37%), Gaps = 59/386 (15%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 199 ELRSYCLGLTHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAK 258

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            +++ +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 259 RMELINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 316

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 317 SEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEGVK-KNRTFFYVGDK 375

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 376 KQSIYRFRKGKKELFDLLKQEFSQIKSD--------NLNTNYRSKELLVDFVNETFK--- 424

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 425 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTL------------ 466

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   I+ +            + I   DI +L  K  D  ++    R       I
Sbjct: 467 ----ETLFEQINFLRS----------KNISYDDICILCWKNSDADMVLDFLRE----QNI 508

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFI 428
                   +L +  +++ ++   ++ 
Sbjct: 509 PAFTQSNVLLENKASVRLVLEYAKYC 534



 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 113/357 (31%), Gaps = 63/357 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IM+VH +KGLE   V L+D+ S+  S+     +                 +  ++  
Sbjct: 616 GISIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEY-DINQGWQLHIKDKIRELTKEP 674

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LII K +  S             +     
Sbjct: 675 IYTLFKENITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQ 734

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +   S+ K+     +      E   L+  ++ ++L  ++             
Sbjct: 735 ERGFLESKEQILSVKKESIQTLQ----KFEKITLQEIQSEERLDSKE------------- 777

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                                           G   H  +Q +        +       +
Sbjct: 778 -----------------------------LYFGNAFHFFMQNLKLPKGENFQILTQRCKS 808

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRID 869
           K        +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 809 KFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALS--FNGEIKQL------D 860

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 861 LLALKDEEAFIIDYKTG-------LAMQDKHKEQVGTYKIAISEILQKDKVRAFIVY 910


>gi|190407254|gb|EDV10521.1| ATP-dependent DNA helicase HMI1, mitochondrial precursor
           [Saccharomyces cerevisiae RM11-1a]
 gi|259149391|emb|CAY86195.1| Hmi1p [Saccharomyces cerevisiae EC1118]
 gi|323331652|gb|EGA73066.1| Hmi1p [Saccharomyces cerevisiae AWRI796]
 gi|323346695|gb|EGA80979.1| Hmi1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 706

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 82/515 (15%), Positives = 159/515 (30%), Gaps = 101/515 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            +     E      V+  +DLII      +L      ++     +  +   +LIDE QD 
Sbjct: 156 PVIEKLVELMDNCKVMTNDDLIIRAKKYLELDSSDSDASSFTQDLHNKYKVVLIDEFQDL 215

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
                 +I  +              + L   GD  QSIY F G+  + + +   ++ K  
Sbjct: 216 YPSLAPLITMIC-----------KGKQLIMFGDTNQSIYGFLGSNNEIMSQLDNLHPKNF 264

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
           T      ++++L  +FRST +I+++  K+ + P   + + +D+  T              
Sbjct: 265 T------TVLKLFDNFRSTPEIISLASKIINRPLAEKQIIDDTDETPS------------ 306

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L  ++ S    Q              +      +  +  I   I+ +I           
Sbjct: 307 ELVRKLPSGVSPQ--------------IMTFDDLAAESEFIIDKITQLI----------C 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRF 427
              +  DI +L R       I  + +     Y I            D L I+ L+ + + 
Sbjct: 343 SSAKFSDIAILSRTNSHLTAIASILK----KYGIPYQKLKSQPDWMDDLRIQFLLDILKV 398

Query: 428 ILSQEDDLSFVC--------------MLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQK 472
                D+                   +  S L    +  I  +      +  ++++Y+  
Sbjct: 399 CSLASDEKHNREFNTGDKWQSNFSILVTMSALKGIGDASIQALYKACGLKNLSIWKYLTM 458

Query: 473 FANCGISKFQHVIKYIHELIHIAQFC----------SPHDFFTLI--------LGAKKGR 514
             N        + K +                     P +    +        L     +
Sbjct: 459 VPNFEWPLGLSIKKKMENYTSNLYEMIENDQVHQLDDPMELLEKVASITNNLNLNPTYFQ 518

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA------- 567
               ++   E    L E       ++ N    +  +   LE Y       H +       
Sbjct: 519 SLSDAQSSLEFKTHLQEMAQVMKVSKSNKPPGISFVKWFLETYFDQTMVFHQSQQALQTT 578

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               V++ T+H+AKGLE P+VFL +     F    
Sbjct: 579 GPGTVKLSTIHSAKGLEFPIVFLTNGSMSNFPMDT 613


>gi|157415705|ref|YP_001482961.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|157386669|gb|ABV52984.1| putative helicase [Campylobacter jejuni subsp. jejuni 81116]
          Length = 921

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 144/386 (37%), Gaps = 59/386 (15%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 199 ELRSYCLGLTHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAK 258

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            +++ +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 259 RMELINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 316

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 317 SEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEGVK-KNRTFFYVGDK 375

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 376 KQSIYRFRKGKKELFDLLKQEFSQIKSD--------SLNTNYRSKELLVDFVNETFK--- 424

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 425 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTL------------ 466

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   I+ +            + I   DI +L  K  D  ++    R  K    I
Sbjct: 467 ----ETLFEQINFLRS----------KNISYDDICILCWKNSDADMVLDFLREQK----I 508

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFI 428
                   +L +  +++ ++   ++ 
Sbjct: 509 PAFTQSNVLLENKASVRLVLEYAKYC 534



 Score =  118 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 113/357 (31%), Gaps = 63/357 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IM+VH +KGLE   V L+D+ S+  S+     +                 +  ++  
Sbjct: 616 GISIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEY-DINQGWQLHIKDKIRELTKEP 674

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LII K S  S             +     
Sbjct: 675 IYTLFKENITRANYEDDINKLYVAFTRAKESLIIVKRSEESVNGNYPSYFKGGFLNIYSQ 734

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +   S+ K+   A +                                     
Sbjct: 735 ERGFLESKEQILSVKKESIQALQKFEK--------------------------------- 761

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                 ++P  + ++ K + +           G   H  +Q +        +       +
Sbjct: 762 ------ISPQEVQSEEKLDSKE-------LYFGNAFHFFMQNLKLPKGENFQMLTQRCKS 808

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRID 869
           K        +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 809 KFRHFLDESDFEKLFKRIEILLKNTQFQNLIGDGKLLKEQALS--FNGEIKQL------D 860

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 861 LLALKDEEAFIIDYKTG-------LAMQDKHKEQVRTYKIAISEILKKDKVRAFIVY 910


>gi|298710700|emb|CBJ32124.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1074

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 97/997 (9%), Positives = 251/997 (25%), Gaps = 155/997 (15%)

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
              +        L +   T     ++       +      + +  + + +     + +  +
Sbjct: 94   SPEDYLRYVEALETELGTTAGGGEQQGGVTVDDDAGSGAQARRARQRAQLEA--EGWRAH 151

Query: 118  KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
               +   A       +   + + K++  V DF D ++    +L++   +      +   +
Sbjct: 152  VAGERDKA------NVYEAFVDLKRREGVEDFSDQLLLARRILRESATAK---AALSLRL 202

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG---AEP 234
            +H+ +D++Q  S    +++ SL                + A  D   +  S  G   AE 
Sbjct: 203  SHVYVDDIQWYSPAMIDILASLVA----------PGARITATADPHLAAMSRVGIFRAEH 252

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
              + R K+               + L  +  S++ I   +  +       +     +   
Sbjct: 253  TAIARFKKAFP--------GAQELHLEGNHHSSSAIQMAMKTL-----EPRDAPAAAKRK 299

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDS-------QCNPQQESWTSYFDSLPQESSASILAR 347
               ++++    G     E       +         + +    T+   +        +  +
Sbjct: 300  NSAKAAKADAPGVADFLEDTAGVERNTSAAAAAATDEKPALATTPGAASRDSRLTCLTFQ 359

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
                 +  +           K  +   DI V          +        +   + V   
Sbjct: 360  TEGDEVKAL---GRRVREVIKAGVHPGDIGVAA---VGGGGVADTLVAALSAAGVPVESP 413

Query: 408  DRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKS------PLFNFSEDDIFKICTQR 460
             RF  + D+   + LM+  R ++   +    + +L S      P    +      +    
Sbjct: 414  PRFSAVFDNETPRMLMSFLRCLVHPSESTPLLHLLMSCPAYALPGGELTAALEGHLSRYV 473

Query: 461  HETETVYEYIQKFANCGISK-------------FQHVIKYIHELIHIAQFCSPHDFFTLI 507
                 + +           +                ++  +      A+     +     
Sbjct: 474  PLRSFLRDIHSGEGGDSHPRGGGHGVSTSARNVAGKLLSDVDRFAETAKRTGVREIMLDF 533

Query: 508  LGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQNSYSS----LQELISELEQYPPT 560
            L      ++       E       + EF   T R EQ +       ++ ++    ++   
Sbjct: 534  LRYSGRLERLEEPTTKEEEEEGRAVAEFFELTARAEQQAGGDNVALVEPILRLFRRHGTG 593

Query: 561  IKRAHSANHNEVRIM---------------------TVHTAKGLESPVVFLVDTGSQVFS 599
              +      +E                           +  +      VF+         
Sbjct: 594  YMKPSGPRDDEAATGGEFGGSSAGSSGVVRVFRLGEDWNAGENRSYHTVFIPFCSRARLP 653

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                     +P        P            +       +   +     +LY  +  A 
Sbjct: 654  GNLRTPRLTVPGPFRGYPEP-------RDTGSLRAEADLARAYHENRGRAMLYAALGSAG 706

Query: 660  DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
             ++ +   +     K     + + +      +  R     +    ++++ +         
Sbjct: 707  QEVCLSVSARAIRGKTHLSPSPF-LAEILGDDAPREWITAIETPKDQEDRLHLVEDEGAA 765

Query: 720  ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS---- 775
                               +  +L S   +       L+ S+I +         L     
Sbjct: 766  APGGSRDAAPKVVEGGYATVAGRLESASPSPAAAALRLSFSSISSFAACPYSYFLQHVLN 825

Query: 776  ----DNQTFNRGLIIH----KLLQVIFT-----LPEHKRKNFITSY--CTKNAKLWPAKE 820
                 N     G  +H     LL+ + +      P    +  +  +    +        +
Sbjct: 826  VSPPPNPRMVYGQAMHEGVAALLRGVASGSRGAGPPPTLEAVVEDFNQHLRGCAFESVDQ 885

Query: 821  YKNLLLSITRLLENPMMTTA---------------MSCDSYSEVSVSGKINCPKKDIIIS 865
             + L  +    LE+ M                          E     KI   +  +++S
Sbjct: 886  LRTLRAAGVAGLESFMSRLIEDRGCTTGAGSGHNSQPRQLLVERKFMVKIP--EASVVLS 943

Query: 866  GRIDQISIS---------QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
            G  D++ I             + I +YK++         +      QL IY    +  + 
Sbjct: 944  GIFDRVDIEAAVGEGSSHPGLLSITDYKSNVGAKVPSRMVRDN--LQLRIYALAAERLFG 1001

Query: 917  NKSLVCLLIYVSEPKV-FIIPQNKLNK-AFAEISTKI 951
                   +  + + +    +P     K A   IS   
Sbjct: 1002 TPPTEIAIESIEDGRRGVAVPLAADAKVALEAISATA 1038


>gi|318078528|ref|ZP_07985860.1| putative ATP-dependent DNA helicase [Streptomyces sp. SA3_actF]
          Length = 569

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 21/199 (10%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K+ +  +DFED+++ T  +L+       I  ++  +  H  +DE QD S
Sbjct: 167 TARVYAQYEALKRASGRIDFEDVLLLTIAILQD---REDIAQQVRSQYRHFTVDEYQDVS 223

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     +             +  VGD  Q+IYSF GA P+ +L           
Sbjct: 224 PLQQRLLDLWLGE----------RDDVCVVGDASQTIYSFTGATPEHLLGF--------P 265

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 +++ L   +RST  I+ + + + S                R R+       T  
Sbjct: 266 ARHPGATVVRLVRDYRSTPQIVHLANNLLSHATGPAARQRLELVAQRPRAPCPSPPSTPT 325

Query: 310 LWEQVVSQHDSQCNPQQES 328
              +  +   +       +
Sbjct: 326 RSPRPRTSPTASAPSSPRA 344


>gi|162451803|ref|YP_001614170.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
 gi|161162385|emb|CAN93690.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56']
          Length = 1089

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/454 (12%), Positives = 123/454 (27%), Gaps = 96/454 (21%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL--------KKAQTLQQASQT 59
           +   +   +     P      +  ++   L ++ G P           + A  L++    
Sbjct: 491 AAEITDGALLLLAGPGTGKTRTLTHRIAHLVLDLGVPPEQCLAITFTRRAADELRERLGA 550

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
              E    + +  F     +  +               E+ + +              ++
Sbjct: 551 LLGEAGGRVPAMTFHALGLSLLREHAQGAGAAPPAIAGERERTALLAAALGVPERRAARL 610

Query: 120 FKSTLASLTL--------------------AKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
                A                               YE+      +LD +DLI +   L
Sbjct: 611 LADIAALKRRCPRHADAHGSPAAGGEIDRHVDRAWKVYEDELAARGLLDLDDLIGHAVLL 670

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L+++  +     +  +   ++ IDE QD    Q+ ++R+L                + A+
Sbjct: 671 LEEQSGALAAARERAR---YLSIDEYQDIDERQYRLVRALVA----------PGGNVCAI 717

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IY F GA+     R ++              ++ L  ++RS+  I+    +V +
Sbjct: 718 GDPDQAIYGFRGADVGFFFRFQQDFPA--------ARVVRLKRNYRSSRPIVEAALQVIA 769

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                       +             G V+L                        ++ + 
Sbjct: 770 PSPTLGARELLPSA------------GGVELV-----------------------AVHES 794

Query: 340 SSASILARRIAYTISNMI--------GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
            + +  A R+ +TI  M+         +  +            D  VL R    +     
Sbjct: 795 PTEAAEAERVVHTIERMLGGSTFFSMDSGRVSDPAGSGDYSFSDFAVLYRTEAQS----E 850

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
             R       +         L +    + L    
Sbjct: 851 RLREAFARSGMPFQRRSDRRLAERAGSEALARAL 884



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 36/146 (24%)

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             +     EL               + + ++T+H AKGLE  VVFLV     +   +    
Sbjct: 954  DVDRFSIELAVCSEIDAWDP--RADRISLLTLHAAKGLEFRVVFLVGCEDGLLPLRFPG- 1010

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              +++   E  RL YVGMTRA ++L + 
Sbjct: 1011 ---------------------------------REETDVAEERRLFYVGMTRARERLFLT 1037

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHN 691
            +    +   K  +      V +    
Sbjct: 1038 RAMQRARHGKVVETEVSPFVREVEER 1063


>gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
 gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans
           743B]
          Length = 867

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 118/363 (32%), Gaps = 68/363 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L + Y     +N  LDF DLI+ T +L +       +   + +   +I IDEVQDTSL++
Sbjct: 199 LVSSYNRLLSENHGLDFTDLIVLTKELFEN----QQVVSALRERYKYINIDEVQDTSLLE 254

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK-RVLREKRINQKRATNA 251
           + +I  L                +   GD  Q+IY + G+ P+    + K+         
Sbjct: 255 YSIIEKLF-----------KNNKVLICGDIFQTIYKWRGSAPEKIFEKFKKDYG------ 297

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               + I   +++R+T ++                           +          Q  
Sbjct: 298 ---VTEIVFNVNYRATKNLTDA----------------------SLKFLYNTFPLETQSL 332

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
            +     +S    ++      +D   +       A+ I   I N+               
Sbjct: 333 YKQGITTNSIEVGEKIILKEAYDIREE-------AKFIYEEIKNLKNKAEDL-------- 377

Query: 372 QAKDILVLVRKRKDTPLITFLTR--FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               I VL R  +    ++   R      +     +  D+F       IKD++A  +   
Sbjct: 378 --SSICVLTRDNRYNIALSNQLRDIASYEEDGFEFILVDQFKFFRRQEIKDIIAFLKLSA 435

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQHVIKY 487
           ++ D +S   ++K       +     I     +     + ++I         KF  +IK 
Sbjct: 436 NRYDSISLKRIVKRLPTGVGDRTFEAIESDEYKKIGIILSDFIDTNTLQYGEKFSLLIKE 495

Query: 488 IHE 490
             +
Sbjct: 496 FKD 498



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 93/341 (27%), Gaps = 44/341 (12%)

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKD--TPLITFLTRFLKNDYKISVVGNDRFILT 413
           +           K  ++  +  V+V         +++     L       +   D   + 
Sbjct: 560 LKEKGEDKETVIKEFLRFSENAVIVGHNVQYDINILSSEIHRLNLGKSKFLAFYDTLDIY 619

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
                  +      +       +            ++D +  I   + +           
Sbjct: 620 RRFYPNLVNHKLNTLSDIFKTENIPSHDAMDDILATKDLL--IRALKIDIIPTSMERIAG 677

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
            +  I  F  + + +++     +   P +    I+     +  +    G   I+ + +F 
Sbjct: 678 MSKYIKAFSFISEKLNDFFKETEEMRPCEVVNYIVQHFNLKTLYPGEEGKGKIERMRDFY 737

Query: 534 NFTLRNEQNSYSSLQELIS-----ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                 +  +  S   L        L               + + I+TVH AKGLE   V
Sbjct: 738 ALLRDIDDKNKGSRDSLFDIIKLTSLSNGELESLILKRTKKSRIPIITVHQAKGLEYETV 797

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           FL  T   VF                                        +K +  EE  
Sbjct: 798 FLAGTAQNVFPS-----------------------------------YLSIKTNNLEEEK 822

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
           +  YV +TRA  +L I         K++ +  + + +  ++
Sbjct: 823 KTFYVAITRAKKRLFISYCLYNEYNKRNFKSDFINFLPQTY 863


>gi|283956857|ref|ZP_06374330.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791583|gb|EFC30379.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 921

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 144/386 (37%), Gaps = 59/386 (15%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 199 ELRSYCLGLTHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAK 258

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            +++ +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 259 RMELINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 316

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 317 SEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEGVK-KNRTFFYVGDK 375

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 376 KQSIYRFRKGKKELFDLLKQEFSQIKSD--------SLNTNYRSKELLVDFVNETFK--- 424

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 425 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTL------------ 466

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   I+ +            + I   DI +L  K  D  ++    R  K    I
Sbjct: 467 ----ETLFEQINFLRS----------KNISYDDICILCWKNSDADMVLDFLREQK----I 508

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFI 428
                   +L +  +++ ++   ++ 
Sbjct: 509 PAFTQSNVLLENKASVRLVLEYAKYC 534



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 113/357 (31%), Gaps = 63/357 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IM+VH +KGLE   V L+D+ S+  S+     +                 +  ++  
Sbjct: 616 GISIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEY-DINQGWQLHIKDKIRELTKEP 674

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LII K +  S             +     
Sbjct: 675 IYTLFKENITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQ 734

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +   S+ K+   A +                                     
Sbjct: 735 ERGFLESKEQILSVKKESIQALQKFEK--------------------------------- 761

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                 ++P  + ++ K + +           G   H  +Q +        +       +
Sbjct: 762 ------ISPQEVQSEEKLDSKE-------LYFGNAFHFFMQNLKLPKGENFQILTQRCKS 808

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRID 869
           K        +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 809 KFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALS--FNGEIKQL------D 860

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 861 LLALKDEEAFIIDYKTG-------LAMQDKHKEQVRTYKMAISEILKKDKVRAFIVY 910


>gi|240142082|ref|YP_002966592.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens
           AM1]
 gi|240012026|gb|ACS43251.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens
           AM1]
          Length = 666

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/574 (13%), Positives = 163/574 (28%), Gaps = 118/574 (20%)

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            ++   + + A Y + ++KN + D++ L+     +L+   +   I           LIDE
Sbjct: 180 HAIEFVEKVGAAYTQFRRKNALFDYDGLLEALAKMLEHERLGPAIAAM----FEEALIDE 235

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD + +Q  ++R+L                +  VGD  QSIY F GA P  +    +  
Sbjct: 236 AQDLNALQIRIVRAL----------RRHDVRVMFVGDPSQSIYQFRGASPDIMFTLVKE- 284

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                       +  L  ++RS+A+IL V + V                 + H  +    
Sbjct: 285 --------CSAKVYLLETNYRSSAEILDVANAVEEAMRKR-----IPRALVSHCGTSGLL 331

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              +++        D +         +  D   +       A                  
Sbjct: 332 PRLIEV--------DDKAAEAAAIVDAILDRKNEGMELEEQA------------------ 365

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                        ++VR   +   +       K    +         +T+  A++DL+ +
Sbjct: 366 -------------IVVRSTANFRHVEAELIARK----VPYTVRAGVKVTEAGAVRDLLCV 408

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF--ANCGISKFQ 482
            R  L+  ++ ++  +L+       E    K+      + ++   I     A       +
Sbjct: 409 ARASLNLGNEPAWQRILQLAPR-VGERKAAKMVEAISASGSLQNAIGIILDAGVRNESLR 467

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            V   +  +               +   +   +             +   ++   ++   
Sbjct: 468 PVAHALRLVDDERGGPPAARLRLALNALEPLLEAEYRDDWKARKADVVAVIDIAHQH--- 524

Query: 543 SYSSLQELISELEQYPPTIKRA----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             + L   +S L       K             + + T+H+AKGLE   V++        
Sbjct: 525 --ADLDSFVSSLTIETSIEKTRSGTADPNEEPPLTLTTIHSAKGLEWQAVYVPSMIEGHI 582

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                +        +E  R  YV +TRA
Sbjct: 583 P-----------------------------------TMYAQAPDDVDEELRAFYVLVTRA 607

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
              L   K +   +        +  ++ D    +
Sbjct: 608 KTHLEFFKPTVMPDGMLRTASRFEGVIRDFCERE 641


>gi|315058935|gb|ADT73264.1| Helicase [Campylobacter jejuni subsp. jejuni S3]
          Length = 921

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 142/386 (36%), Gaps = 59/386 (15%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 199 ELRSYCLGLTHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAK 258

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            ++  +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 259 RMEFINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 316

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 317 SEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEGVK-KNRTFFYVGDK 375

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 376 KQSIYRFRKGKKELFDLLKQEFSQIKSD--------NLNTNYRSKELLVDFVNETFK--- 424

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 425 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTL------------ 466

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   I+ +            + I   DI +L  K  D  ++    R       I
Sbjct: 467 ----ETLFEQINFLRS----------KNISYDDICILCWKNSDADMVLDFLRE----QNI 508

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFI 428
                   +L +  +++ ++   ++ 
Sbjct: 509 PAFTQSNVLLENKASVRLVLEYAKYC 534



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 113/357 (31%), Gaps = 63/357 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IM+VH +KGLE   V L+D+ S+  S+     +                 +  ++  
Sbjct: 616 GISIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEY-DINQGWQLHIKDKIRELTKEP 674

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LII K +  S             +     
Sbjct: 675 IYTLFKENITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQ 734

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +   S+ K+     +      E   L+  ++ ++L  ++             
Sbjct: 735 ERGFLESKEQILSVKKESIQTLQ----KFEKITLQEIQSEERLDSKE------------- 777

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                                           G   H  +Q +        +       +
Sbjct: 778 -----------------------------LYFGNAFHFFMQNLKLPKGENFQILTQRCKS 808

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRID 869
           K        +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 809 KFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALS--FNGEIKQL------D 860

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 861 LLALKDEEAFIIDYKTG-------LAMQDKHKEQVGTYKIAISEILQKDKVRAFIVY 910


>gi|311743795|ref|ZP_07717601.1| excision endonuclease subunit UvrD [Aeromicrobium marinum DSM
           15272]
 gi|311312925|gb|EFQ82836.1| excision endonuclease subunit UvrD [Aeromicrobium marinum DSM
           15272]
          Length = 686

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 120/412 (29%), Gaps = 79/412 (19%)

Query: 26  FQVSDINKYVSLSMETGNPTILK--KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKN 83
             V+   +                 +A+T   A+  Q       +    F     +    
Sbjct: 59  LAVTFTTRAAGEMRTRLGALDAAGVQARTFHSAALRQARYFWPQVYGGEFPEIIASKFGL 118

Query: 84  IITQEINKKSPDLKEKLKKSQDEFI-----KIRDRFNTYKMFKSTLASLTL----AKYLN 134
           +            +  L+    E        +R          +      L       L 
Sbjct: 119 VADAARRHGLSSERSLLRDLSAEIEWAKVTNLRPADYPAAAGPARRQVADLDPGTVASLM 178

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             YE+ K++   +D ED+++ T  +L + +    I  ++ ++    ++DE QD +     
Sbjct: 179 TAYEDVKRERGRIDMEDILLITAAILAEDE---RIAAQVRRQYRWFVVDEFQDVNP---- 231

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
                     +          +  VGD +Q+IYSF GA P+ +    R            
Sbjct: 232 ------LQSLLLDLWLGGRDDICVVGDPRQTIYSFAGASPRILRDFSR--------VHPG 277

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
               EL  ++RST  I+ V + VF                      R   V  V L    
Sbjct: 278 AERHELVRNYRSTPQIVAVANAVF-------------------PPRRRDAVEGVVL---- 314

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                 Q +    S+T Y D   +       A  +A  I+ +              +  +
Sbjct: 315 ---QSQQESGNPVSYTGYPDEPAE-------AAGVASEIALLHRRG----------VPYR 354

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
           ++ VL R    +            ++ I  V            ++  +AL R
Sbjct: 355 EMAVLFRINAQSEAFEEAL----GEHGIPFVLRGVEGFFQRAEVRQAVALLR 402



 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 91/353 (25%), Gaps = 53/353 (15%)

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCG----------ISKFQHVIKYIH--ELI 492
                  ++  +     ++E   E + +                ++ +  +  +      
Sbjct: 348 RRGVPYREMAVLFRINAQSEAFEEALGEHGIPFVLRGVEGFFQRAEVRQAVALLRGSAHA 407

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQNSYS-SLQE 549
                         +L +     +  S  G   +  + L+  ++          +  +  
Sbjct: 408 GEGADAGLAADVRAVLASMGYTDEPPSGAGATRDRWESLNALVSMAADLATADPAAGMGA 467

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L+++LE+   +     +   + V + T+H+AKGLE   VF V     +    H       
Sbjct: 468 LVADLERRAASAH---APTADGVTLATLHSAKGLEWDAVFCVGMHEGMMPSVH------- 517

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                              EE  RL YVG+TRA   L++   + 
Sbjct: 518 ----------------------------ADTPEAVEEERRLFYVGLTRARHDLLVSWAAT 549

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                +S +     +      N    +      S         +      +     R E 
Sbjct: 550 RRQGGRSQRGPTRFLDPLIPANHAARRTADQPRSRKVSRCRVCDAVLATADERRRGRCEG 609

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
                DE    +      +              D   ++  E    D +   R
Sbjct: 610 CPSTYDEALFERLRAWRSETAAEHKVPAFVVFTDATLQSIAEVKPVDPRALLR 662


>gi|205356088|ref|ZP_03222855.1| putative helicase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345931|gb|EDZ32567.1| putative helicase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 921

 Score =  126 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 142/386 (36%), Gaps = 59/386 (15%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 199 ELRSYCLGLTHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAK 258

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            ++  +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 259 RMEFINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 316

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 317 SEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEGVK-KNRTFFYVGDK 375

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 376 KQSIYRFRKGKKELFDLLKQEFSQIKSD--------NLNTNYRSKEFLVDFVNETFK--- 424

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 425 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTL------------ 466

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   I+ +            + I   DI +L  K  D  ++    R       I
Sbjct: 467 ----ETLFEQINFLRS----------KNISYDDICILCWKNSDADMVLDFLRE----QNI 508

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFI 428
                   +L +  +I+ ++   ++ 
Sbjct: 509 PAFTQSNVLLENKASIRLVLEYAKYC 534



 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 113/357 (31%), Gaps = 63/357 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IM+VH +KGLE   V L+D+ S+  S+     +                 +  ++  
Sbjct: 616 GISIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEY-DINQGWQLHIKDKIRELTKEP 674

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LII K +  S             +     
Sbjct: 675 IYTLFKENITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQ 734

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +   S+ K+     +      E   L+  ++ ++L  ++             
Sbjct: 735 ERGFLESKEQILSVKKESIQTLQ----KFEKITLQEIQSEERLDSKE------------- 777

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                                           G   H  +Q +        +       +
Sbjct: 778 -----------------------------LYFGNAFHFFMQNLKLPKGENFQILTQRCKS 808

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRID 869
           K        +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 809 KFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALS--FNGEIKQL------D 860

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 861 LLALKDEEAFIIDYKTG-------LAMQDKHKEQVGTYKIAISEILQKDKVRAFIVY 910


>gi|57238504|ref|YP_179635.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni RM1221]
 gi|218563082|ref|YP_002344861.1| putative recombination protein RecB [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|57167308|gb|AAW36087.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           RM1221]
 gi|112360788|emb|CAL35588.1| putative helicase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|315927429|gb|EFV06767.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 921

 Score =  126 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 142/386 (36%), Gaps = 59/386 (15%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 199 ELRSYCLGLTHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAK 258

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            ++  +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 259 RMEFINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 316

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 317 SEFKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEGVK-KNRTFFYVGDK 375

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 376 KQSIYRFRKGKKELFDLLKQEFSQIKSD--------NLNTNYRSKELLVDFVNETFK--- 424

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 425 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTL------------ 466

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   I+ +            + I   DI +L  K  D  ++    R       I
Sbjct: 467 ----ETLFEQINFLRS----------KNISYDDICILCWKNSDADMVLDFLRE----QNI 508

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFI 428
                   +L +  +++ ++   ++ 
Sbjct: 509 PAFTQSNVLLENKASVRLVLEYAKYC 534



 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 113/357 (31%), Gaps = 63/357 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IM+VH +KGLE   V L+D+ S+  S+     +                 +  ++  
Sbjct: 616 GISIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEY-DINQGWQLHIKDKIRELTKEP 674

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LII K +  S             +     
Sbjct: 675 IYTLFKENITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQ 734

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +   S+ K+     +      E   L+  ++ ++L  ++             
Sbjct: 735 ERGFLESKEQILSVKKESIQTLQ----KFEKITLQEIQSEERLDSKE------------- 777

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                                           G   H  +Q +        +       +
Sbjct: 778 -----------------------------LYFGNAFHFFMQNLKLPKGENFQILTQRCKS 808

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRID 869
           K        +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 809 KFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALS--FNGEIKQL------D 860

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 861 LLALKDEEAFIIDYKTG-------LAMQDKHKEQVGTYKIAISEILQKDKVRAFIVY 910


>gi|13508079|ref|NP_110028.1| DNA helicase II [Mycoplasma pneumoniae M129]
 gi|2495150|sp|P75438|Y340_MYCPN RecName: Full=Probable DNA helicase MPN_340
 gi|1674189|gb|AAB96144.1| DNA helicase II [Mycoplasma pneumoniae M129]
          Length = 529

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 21/160 (13%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A      Y+     N + DF DLII T  LLK     + +     + +++IL+DE QDT+
Sbjct: 169 AATALRAYQNYLITNNLFDFSDLIIETCHLLKGN---SELLQAFTESVHYILVDEFQDTN 225

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L Q+E+++ L           ++   LF VGD  Q IY + GA  +     K   Q    
Sbjct: 226 LAQYELVKLLA----------TTHPNLFLVGDSNQMIYGWRGAVVEIFELLKNDFQA--- 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
                        ++RS   +L V + V +     +  + 
Sbjct: 273 -----VKEFYTTQNYRSIQAVLAVANDVLTAIARKERKAL 307


>gi|308377259|ref|ZP_07441669.2| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008]
 gi|308348310|gb|EFP37161.1| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008]
          Length = 695

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 100/367 (27%), Gaps = 63/367 (17%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
             +  +         +    +   L +            L     E      V+DF   +
Sbjct: 238 ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 297

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 298 ASAARLAATSP---QVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 348

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             L AVGD  QSIY + GA    + R          + G    ++EL  S+R+    L V
Sbjct: 349 LALTAVGDPIQSIYGWRGASATNLPRFTTDFP---LSDGTPAPVLELLTSWRNPPQALRV 405

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + + +           S      R       G V+                        
Sbjct: 406 ANGISAEARRR------SVAVRALRPRPDAPPGAVRCALL-------------------- 439

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                ++    +A  +                     ++     VLVR+  D   I    
Sbjct: 440 --PDVQAEREWIADHLRMRYQRAEADG----------VKPPTAAVLVRRNADAAAIADTL 487

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
           R       I         L     + +++A+ R +       + + +L  P +     D+
Sbjct: 488 RA----RGIPAEVVGLAGLLSIPEVAEVVAMLRLVADPTAGAAAMRVLTGPRWRLGARDL 543

Query: 454 FKICTQR 460
             +  + 
Sbjct: 544 AALWRRA 550


>gi|307748346|gb|ADN91616.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 921

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 143/386 (37%), Gaps = 59/386 (15%)

Query: 52  TLQQASQTQCIEERFSLLSSFF----LTQKFTPQKNIITQ-EINKKSPDLKEKLKKSQDE 106
            L+         + +  L   F    L      Q + +T+ E  K   DL+        +
Sbjct: 199 ELRSYCLGLTHVKNYKNLCDNFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAK 258

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKK 162
            +++ +  NTY +         L   L  HY EAK    K    L+F+D+     +L+  
Sbjct: 259 RMELINALNTYAIELENYKIANLMN-LLNHYSEAKNIFHKDKNTLNFQDVSKKVYELIT- 316

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
            +    I +++D  I+H+ IDE QDTS+IQ++++R L  +   G+      RT F VGD+
Sbjct: 317 SEFKDMIYFRLDGFISHLFIDEFQDTSVIQYQILRPLIAELVSGEGVK-KNRTFFYVGDK 375

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           KQSIY F   + +     K+   +  ++         L  ++RS   ++  V++ F    
Sbjct: 376 KQSIYRFRKGKKELFDLLKQEFSQIKSD--------SLNTNYRSKELLVDFVNETFK--- 424

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 E         +    + G V++ E    +  +Q    +E               
Sbjct: 425 ------EKIKDYKEQFALESKKGGFVRIVESKEQKVKNQAQEIKEKTL------------ 466

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   I+ +            + I   DI +L  K  D  ++    R  K    I
Sbjct: 467 ----ETLFEQINFLRS----------KNISYDDICILCWKNSDADMVLDFLREQK----I 508

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFI 428
                   +L +  +++ ++   ++ 
Sbjct: 509 PAFTQSNVLLENKASVRLVLEYAKYC 534



 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 113/357 (31%), Gaps = 63/357 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IM+VH +KGLE   V L+D+ S+  S+     +                 +  ++  
Sbjct: 616 GISIMSVHKSKGLEFDHVILLDSLSKNNSNNEDIMLEY-DINQGWQLHIKDKIRELTKEP 674

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LII K S  S             +     
Sbjct: 675 IYTLFKENITRANYEDDINKLYVAFTRAKESLIIVKRSEESVNGNYPSYFKGGFLNIYSQ 734

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +   S+ K+   A +                                     
Sbjct: 735 ERGFLESKEQILSVKKESIQALQKFEK--------------------------------- 761

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                 ++P  + ++ K + +           G   H  +Q +        +       +
Sbjct: 762 ------ISPQEVQSEEKLDSKE-------LYFGNAFHFFMQNLKLPKGENFQMLTQRCKS 808

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRID 869
           K        +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 809 KFRHFLDESDFEKLFKRIEILLKNTQFQNLIGDGKLLKEQALS--FNGEIKQL------D 860

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 861 LLALKDEEAFIIDYKTG-------LAMQDKHKEQVRTYKIAISEILKKDKVRAFIVY 910


>gi|149377922|ref|ZP_01895650.1| Superfamily I DNA and RNA helicase [Marinobacter algicola DG893]
 gi|149357812|gb|EDM46306.1| Superfamily I DNA and RNA helicase [Marinobacter algicola DG893]
          Length = 789

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 99/691 (14%), Positives = 199/691 (28%), Gaps = 116/691 (16%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             ++ LT++  P+   +  EI +   D  E      D         +             
Sbjct: 158 YQAWQLTRRLAPED--LADEIRRNKKDFVETAVNFIDLVKTTLSPVDIVFEELGYSDKHR 215

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               L   +E+ +K    + + D++      + +      ++  +  +++ +L+DE QDT
Sbjct: 216 YLIDLFHSFEQWRKSQSRISYADMLYEPVMAIHQNP---PLQRLVGNKMDLVLVDEYQDT 272

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL-REKRINQKR 247
           + IQ  ++R +  D             +  VGD  Q+IY F GA P  +L R     +  
Sbjct: 273 NEIQHLLLRYVAGD----------RARVTVVGDPDQTIYEFRGARPDFILKRFSEEFESP 322

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL--SEDSTTTIRHRSSRIGQV 305
                       L  +FR    +  + + +       + +      TT     +    + 
Sbjct: 323 LEQ--------TLSYTFRYGHQVALLANHLICHNTGRKNVLCHSHPTTPATDITLHQHEN 374

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
            +  +++ +    +         +  +  S+P      +LAR++ Y I    G       
Sbjct: 375 DSDVVFKLLQPMDEETLGSTAILFRVWSQSVP--IELKLLARQVPYRIDAGKGALFSREV 432

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                +     L++V  R           F +   +   VG         L   +L  L 
Sbjct: 433 QAITSL-----LMVVSGRIRNLPDDDRLEFARQLLRFPHVG---------LKEPELEQLA 478

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           RF+                   F E    ++          ++ +   A   + K    +
Sbjct: 479 RFLA-----------------GFGEGWHERLLAMD------FDALAPMAAKKLRKLGETL 515

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             +          S  D  +      +  +    R      +  DE +       +   S
Sbjct: 516 AQLERF-----KGSVADLISRYAEETELYEGI--RSLALTHETADERIETIRGF-RLYLS 567

Query: 546 SLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            L   + + LE      K+A         + T+H  KGLE   V L     +        
Sbjct: 568 GLDVSVDAALEHLKALKKQAGENRRGGALLSTIHRTKGLEWSTVILPGLQEKYLP----- 622

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                           + P+++                  E   RLLYV MTR  +QL +
Sbjct: 623 ----------------YSPRAQDDPKAF-----------LESERRLLYVAMTRTRNQLHL 655

Query: 665 CKHSNTSN---EKKSNQRTWYDMVYD-------SFHNDERVKKIKLTNSINKDEWIAYEW 714
                + N   +       + D +          + +           +          +
Sbjct: 656 ITRPFSENRHLDGDQGPSRFMDELCFPLSREFGHWLDKHATDSAATLTATVPLTSTGLRY 715

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +           E TI++       P+   +
Sbjct: 716 ANLQGVTLQTSAEATIEETTPLWARPRLSHA 746


>gi|6324477|ref|NP_014546.1| Hmi1p [Saccharomyces cerevisiae S288c]
 gi|59799592|sp|Q12039|HMI1_YEAST RecName: Full=ATP-dependent DNA helicase HMI1, mitochondrial;
           Flags: Precursor
 gi|600463|emb|CAA58184.1| orf 00920 [Saccharomyces cerevisiae]
 gi|841469|gb|AAC49064.1| potential DNA helicase by amino acid sequence similarity
           [Saccharomyces cerevisiae]
 gi|1419944|emb|CAA99107.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814796|tpg|DAA10689.1| TPA: Hmi1p [Saccharomyces cerevisiae S288c]
          Length = 706

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 81/515 (15%), Positives = 158/515 (30%), Gaps = 101/515 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            +     E      V+  +DLII      +L      ++     +  +   +LIDE QD 
Sbjct: 156 PVIEKLVELMDNCKVMTNDDLIIRAKKYLELDSSDSDASSFTQDLRNKYKVVLIDEFQDL 215

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
                 +I  +              + L   GD  QSIY F G+  + + +   ++ K  
Sbjct: 216 YPSLAPLITMIC-----------KGKQLIMFGDTNQSIYGFLGSNNEIMSQLDNLHPK-- 262

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  ++++L  +FRST +I+++  K+ + P   + + +D+  T              
Sbjct: 263 ----NSTTVLKLFDNFRSTPEIISLASKIINRPLAEKQIIDDTDETPS------------ 306

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L  ++ S    Q              +      +  +  I   I+ +I           
Sbjct: 307 ELVRKLPSGVSPQ--------------IMTFDDLAAESEFIIDKITQLI----------C 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRF 427
              +  DI +L R       I  + +     Y I            D L I+ L+ + + 
Sbjct: 343 SSAKFSDIAILSRTNSHLTAIASILK----KYGIPYQKLKSQPDWMDDLRIQFLLDILKV 398

Query: 428 ILSQEDDLSFVC--------------MLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQK 472
                D+                   +  S L    +  I  +      +  ++++Y+  
Sbjct: 399 CSLASDEKHNREFNTGDKWQSNFSILVTMSALKGIGDASIQALYKACSLKNLSIWKYLTM 458

Query: 473 FANCGISKFQHVIKYIHELIHIAQFC----------SPHDFFTLI--------LGAKKGR 514
             N        + K +                     P +    +        L     +
Sbjct: 459 VPNFEWPLGLSIKKKMENYTSNLYEMIENDQVHQLDDPMELLEKVASITNNLNLNPTYFQ 518

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA------- 567
               ++   E    L E       ++ N    +  +   LE Y       H +       
Sbjct: 519 SLSDAQSSLEFKTHLQEMAQVMKVSKSNKPPGISFVKWFLETYFDQTMVFHQSQQALQTT 578

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               V++ T+H+AKGLE P+VFL +     F    
Sbjct: 579 GPGTVKLSTIHSAKGLEFPIVFLTNGSMSNFPMDT 613


>gi|297243751|ref|ZP_06927681.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis AMD]
 gi|296888172|gb|EFH26914.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis AMD]
          Length = 1417

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 84/541 (15%), Positives = 165/541 (30%), Gaps = 75/541 (13%)

Query: 14  ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
           + +  D+  L       +    S     G          L+         E         
Sbjct: 167 DALIDDVLALAADISCSMIGINS----RGESIDSTSKAVLEIQKWNNAWIEHLQKAIDCA 222

Query: 74  LTQK---FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            T +     P    + +  N       EK +    E+++  +     K ++S    L  A
Sbjct: 223 ETTEIIAKKPSSIKLRRGKNDSDEKYFEKCENYGKEYVEYLNITLKNKCYESCNNLLEAA 282

Query: 131 K------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           K       L   ++ AK++  +  F D  I    L+        I  +  ++ + +L+DE
Sbjct: 283 KKRNALLELVLAFDAAKQRANMAQFSDFTIAAYRLVTHFPS---IAEQYRRQYSQVLLDE 339

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHS--------------SPRTLFAVGDEKQSIYSFH 230
            QDTS  Q  +I +L      G    S                  + AVGD  Q+IYSF 
Sbjct: 340 YQDTSTTQAMLIATLFHKKTSGVEEASVVAKTSENQDFLTTQQTHIAAVGDPFQAIYSFR 399

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA      + ++      ++         L  + R++  IL   + +             
Sbjct: 400 GASSGAFRKLEQALNIDQSS------EFSLTRTRRNSQLILKAANSI------------- 440

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
            T  +R    R       ++  + +   D+                 Q      + R + 
Sbjct: 441 -TKPLRVPPLRHSSSLATEVEVKNLQYLDNAPKGTFGVLNMP----TQYQEVEAVVRFVK 495

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
           Y   N +  +   ++   R      + VL R + + PL     +       +  +     
Sbjct: 496 YVKHNALSENDDTNSASAR------VAVLFRSKNNIPLYEEALQ----KAGLRTLTVGYS 545

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET------E 464
            L +   I+D++AL   +    +  + + +L +P F  + DD+  I              
Sbjct: 546 ALLEKPEIRDVLALLSVVADHTNTQALMRLLATPRFALNTDDLAAIANIATSKNIEYVFR 605

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            + +     A    SK+  V++                F   +L      + + ++   E
Sbjct: 606 ALVQAGLVDAETPRSKWSQVVREQQSQASQTNSIHGGVFVADVL-----LEAYETQLSEE 660

Query: 525 V 525
            
Sbjct: 661 A 661



 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 16/123 (13%)

Query: 838  TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS------ISQQN-IFIFEYKTHHHVP 890
              A      +E  +   +     D II+G+ID I               I ++KT    P
Sbjct: 1285 KWAHRRPIAAEQPIVAHVP-ELGDQIINGKIDAIFAGGLNPEDPSKLYTIVDWKTGR-KP 1342

Query: 891  QEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYV----SEPKVFIIPQNKLNKAF 944
             + + I    + QL  Y  +L      P  ++   L YV       +     Q   ++  
Sbjct: 1343 TKPQDIALK-LGQLDWYRLLLSLMTKVPLDAIDATLYYVNISDECEREIHAEQKTKDEIL 1401

Query: 945  AEI 947
            AE+
Sbjct: 1402 AEL 1404



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVV 588
           D +L         +  +L   +S +        +  S +    V +MT+H +KGLE P V
Sbjct: 754 DAYLQEMSDF---TTPTLHGFMSWIFNIDKINDQPSSVDEPADVVLMTIHQSKGLEWPAV 810

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +V      F       + ++ +    
Sbjct: 811 AIVGLNEGAFPSNQGDNLRVIATQQSG 837


>gi|18466509|ref|NP_569317.1| putative DNA helicase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|160431731|ref|YP_001551845.1| putative DNA helicase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|260752044|ref|YP_003237559.1| putative DNA helicase [Escherichia coli O111:H- str. 11128]
 gi|16505825|emb|CAD09703.1| putative DNA helicase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|159885272|dbj|BAF92876.1| putative DNA helicase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|257767514|dbj|BAI39008.1| putative DNA helicase [Escherichia coli O111:H- str. 11128]
          Length = 679

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 87/645 (13%), Positives = 183/645 (28%), Gaps = 109/645 (16%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
           + +I  + SL+++       ++   +++       + R+  L        F  + N I  
Sbjct: 77  IPEIRTFHSLALKIVGYGERQQI--IKKKDLITPSDYRYEQLVKQAYRYGFDHEANYIDP 134

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
              +       + + +    +   +      + +  + +          Y E  ++N + 
Sbjct: 135 NEIENFELFIARCRAAAVTPVDAANDPTFSNIKRGFIHA-------YGRYCELLEENSLR 187

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            F+D +I    LL+           +     HI++DE QD +LIQ ++ R L++      
Sbjct: 188 TFDDCLIEAVALLRNDSS-------LGAHFKHIIVDEYQDVNLIQHDMTRLLSKSDTS-- 238

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPK-RVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                   + AVGD  Q IY + GA P       +R              + +L  +FR 
Sbjct: 239 --------VMAVGDVNQCIYEWRGARPDFIGGLFERHYPN--------TKVFQLSCTFRF 282

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             ++  + + V             S  +      R                         
Sbjct: 283 GHELSLMANSVIRRNSTKLTKLCVSHPSTPKTEVR------------------------- 317

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
             + +    +    S S   + I       +    I         +  +    +  R + 
Sbjct: 318 LHFDNCLSKVLSNLSVSSGTQAILSRTKANLAEAEIVLRLCGLPYRYLNGSSALHTRTEI 377

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            +       L     +SV G+ R +         +    +          F   L S L 
Sbjct: 378 GI-------LVVGVLLSVYGDLRLLENHPNKQAIVYGFLKEAGFSWQKGQFKAAL-SGLM 429

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
               D    +       +   + + + A       +     I  L  ++         + 
Sbjct: 430 APHADLWSALGQLFEGAQYQKDRLGRLATICQKDGEET-PAIDVLRRLSMEGFIDSVGSE 488

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
            +          S      +  + E L+ +            +  + L           +
Sbjct: 489 GVTRTG------SNDQQRGVVRIGELLDSSK----------IDSRTFLNLI--LNPGEAA 530

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            + +   + T+H +KGLE   V L+    Q F       ++ + +  + P     I +  
Sbjct: 531 TDCDPFILSTLHGSKGLEWDNVILIGLNEQEFPGGKPDDVYSVRTSMNTPPAEEEIEEE- 589

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                 RL YVG+TR   QL +    +  
Sbjct: 590 ---------------------RRLFYVGITRTKQQLNLVVPLDEG 613


>gi|257459106|ref|ZP_05624225.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           gracilis RM3268]
 gi|257443491|gb|EEV18615.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           gracilis RM3268]
          Length = 479

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/232 (23%), Positives = 86/232 (37%), Gaps = 17/232 (7%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
             A          S LSS F+            +   KK      +L            R
Sbjct: 221 AGAVNGLSPVSDLSKLSSGFILSALANGSFDYPRSQLKKISHFDGEL----ARLKDAVAR 276

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS-----AW 168
              +      +    L K      +  ++K+  L F D+    + LL     +       
Sbjct: 277 EIAWMDATYAVKLAGLIKIYAEALKSVQRKSGKLTFGDVTAAVHSLLNPSAEALQGNREL 336

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           + +++D +I HILIDE QDT + Q+E++  L  +   GK       + F VGD+KQSIY 
Sbjct: 337 LYFRLDSKITHILIDEFQDTDICQYEIMLPLISEALAGKGAEERCGSFFYVGDKKQSIYK 396

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           F GAE K     +    +             LP ++RS   I+  V+++   
Sbjct: 397 FRGAERKIFDILREQFSQ--------IKTQSLPRNYRSLKLIVKFVNEILRD 440


>gi|167815128|ref|ZP_02446808.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei 91]
          Length = 626

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 127/420 (30%), Gaps = 42/420 (10%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
              +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239 AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
             +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299 TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
             + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355 LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412 DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452 RYTLAVNQRSTPAIVGACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317 QHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                       WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504 TDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPLAA 563

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I +  D
Sbjct: 564 SGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAPGD 619


>gi|38347912|ref|NP_941161.1| putative DNA helicase [Serratia marcescens]
 gi|190410259|ref|YP_001965760.1| putative DNA helicase [Klebsiella pneumoniae]
 gi|226807648|ref|YP_002791342.1| hypothetical protein pEC-IMP_081 [Enterobacter cloacae]
 gi|226809958|ref|YP_002791652.1| hypothetical protein pEC-IMPQ_080 [Enterobacter cloacae]
 gi|38259389|emb|CAE51614.1| putative DNA helicase [Serratia marcescens]
 gi|146151052|gb|ABQ02818.1| putative DNA helicase [Klebsiella pneumoniae]
 gi|226425873|gb|ACO53966.1| hypothetical protein [Enterobacter cloacae]
 gi|226426184|gb|ACO54276.1| hypothetical protein [Enterobacter cloacae]
          Length = 679

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 89/646 (13%), Positives = 182/646 (28%), Gaps = 111/646 (17%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
           + +I  + SL+++       ++   +++       + R+  L        F  + N I  
Sbjct: 77  IPEIRTFHSLALKIVGYGERQQI--IKKKDLITPSDYRYEQLVKQAYRYGFDHEANYIDP 134

Query: 88  EINKKSPDLKEKLKKSQ-DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
              +       + + +         D   +    +   A           Y E  ++N +
Sbjct: 135 NEIENFELFIARCRAAAVTPVDAANDPTFSNIKREFIHA--------YGRYCELLEENSL 186

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
             F+D +I    LL+           +     HI++DE QD +LIQ ++ R L++     
Sbjct: 187 RTFDDCLIEAVALLRNDSS-------LGAHFKHIIVDEYQDVNLIQHDMTRLLSKSDTS- 238

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPK-RVLREKRINQKRATNAGQKFSIIELPLSFR 265
                    + AVGD  Q IY + GA P       +R              + +L  +FR
Sbjct: 239 ---------VMAVGDVNQCIYEWRGARPDFIGGLFERHYPN--------TKVFQLSCTFR 281

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
              ++  + + V             S  +      R                        
Sbjct: 282 FGHELSLMANSVIRRNSTKLTKLCVSHPSTPKTEVR------------------------ 317

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
              + +    +    S S   + I       +    I         +  +    +  R +
Sbjct: 318 -LHFDNCLSKVLSNLSVSSGTQAILSRTKANLAEAEIALRLCGLPYRYLNGSSALHTRTE 376

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
             +       L     +SV G+ R +         +    +    +     F   L S L
Sbjct: 377 IGI-------LVVGVLLSVYGDLRLLENHPNKQAIVYGFLKEAGFRWQKGQFKAAL-SGL 428

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
                D    +       +   + + + A       +     I  L  ++         +
Sbjct: 429 MAPHADLWSALGQLFEGAQYQKDRLGRLATICQKDGEET-PAIDVLRRLSMEGFIDSVGS 487

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
             +          S      +  + E L+ +            +  + L           
Sbjct: 488 EGVTRTG------SNDQQRGVVRIGELLDSSK----------IDSRTFLNLI--LNPGEA 529

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
           + + +   + T+H +KGLE   V L+    Q F       ++ + +  + P     I + 
Sbjct: 530 ATDCDPFILSTLHGSKGLEWDNVILIGLNEQEFPGGKPDDVYSVRTSMNTPPAEEEIEEE 589

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                  RL YVG+TR   QL +    +  
Sbjct: 590 ----------------------RRLFYVGITRTKQQLNLVVPLDEG 613


>gi|319638497|ref|ZP_07993259.1| hypothetical protein HMPREF0604_00883 [Neisseria mucosa C102]
 gi|317400246|gb|EFV80905.1| hypothetical protein HMPREF0604_00883 [Neisseria mucosa C102]
          Length = 633

 Score =  125 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 73/633 (11%), Positives = 168/633 (26%), Gaps = 133/633 (21%)

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
               +I  V   R  + D      L AL  F L+         +L   LF ++  +I+++
Sbjct: 6   LKQRRIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLFGYTAKEIYEL 65

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
               H+     E   +                                           +
Sbjct: 66  NHNEHQLLKWLESSAEAMEKWRK------------------GGIFAAVQQFAARHDIETR 107

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY----------PPTIKRAHS 566
            +       +    + L      E +   +   L   L +                    
Sbjct: 108 LLKGGNERSLTNYYQILELLAE-EDSQSRNPAALHKWLNEQISRARSGHFPSDAQTIRLE 166

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           ++   V+I+T+H +KGL+ P+V+         + K   K+    +   +           
Sbjct: 167 SDEKLVKIVTMHASKGLQYPLVYCPFAWDTKDNSKENWKILHTDNHETELLA-------- 218

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
            ++      + HL      E  RLLYV +TRA +QL I   +N +    +      + + 
Sbjct: 219 -KSQTSEAELSHLADEKTAEDLRLLYVALTRAEEQLNIYAAANKNCTPNNPFAYLLEGLP 277

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ--------- 737
           ++            T+ +   +     +  + PENT     E        Q         
Sbjct: 278 EAGRESVSQSYQSATDVVEMLKTNWQRFIKNAPENTEFTFTEEAPPETIYQYSRQQDQAL 337

Query: 738 ----------------------------KIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                                           +   P  +         PS       ++
Sbjct: 338 NAQSIKRRNFDFIRHTSFTGLSRHTKSSDEQHEPLQPAIDPAESADRAMPSENLPSPLSD 397

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
              +    +  N G+ +H++L+ +      + ++ + +   +             L +++
Sbjct: 398 GLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQSEMIAEVLQRHSFED-----KWLPTVS 452

Query: 830 RLLENPMMTTAMSC--------DSYSEVSVSG---------------------------- 853
            +L+   +T  +              E+  +                             
Sbjct: 453 TMLDTCRLTPLIGESLSQIPPSRRLPEMGFTLYMDDFKLDDLRRWFASSEANLPPECVQA 512

Query: 854 --KINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPY---------THI 901
              ++       ++G ID +      ++ + +YK++H       +             + 
Sbjct: 513 AQLLDFHDLQGYLNGFIDMVCQDSDGHVVLIDYKSNHLGNDASAYTQQAMNEAVAHHHYY 572

Query: 902 AQLSIYEKILKDSYPNK-----SLVCLLIYVSE 929
            Q  IY   +   Y  +      +    +++  
Sbjct: 573 LQALIYAVAIARYYALRGKPLPKITIRYLFLRG 605


>gi|240115748|ref|ZP_04729810.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
 gi|268601426|ref|ZP_06135593.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
 gi|268585557|gb|EEZ50233.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18]
          Length = 274

 Score =  125 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 23/169 (13%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           KE + K+Q +    ++   T +    T +         + A Y+E  +    +DF+DLI 
Sbjct: 127 KEAVFKAQHQISLWKNDLKTPEDVVQTASNVWEQQTARVYASYQETLQSYQAVDFDDLIR 186

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               LL++    + +R K  + + ++L+DE QDT+  Q+ +++ LT           +  
Sbjct: 187 LPAVLLQQN---SEVRNKWQRRLRYLLVDECQDTNTCQFALMKLLTG----------AEG 233

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
              AVGD+ QSIY++ GA  + + + +    +          +I+L  +
Sbjct: 234 MFTAVGDDDQSIYAWRGANMENLRKMQENYPQ--------MKVIKLEQN 274


>gi|323307062|gb|EGA60345.1| Hmi1p [Saccharomyces cerevisiae FostersO]
          Length = 706

 Score =  125 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 81/515 (15%), Positives = 157/515 (30%), Gaps = 101/515 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            +     E      V+  +DLII      +L      ++     +  +   +LIDE QD 
Sbjct: 156 PVIEKLVELMDNCKVMTNDDLIIRAKKYLELDSSDSDASSFTQDLHNKYKVVLIDEFQDL 215

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
                 +I  +              + L   GD  QSIY F G+  + + +   +  K  
Sbjct: 216 YPSLAPLITMIC-----------KGKQLIMFGDTNQSIYGFLGSNNEIMSQLDNLXPK-- 262

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  ++++L  +FRST +I+++  K+ + P   + + +D+  T              
Sbjct: 263 ----NSTTVLKLFDNFRSTPEIISLASKIINRPLAEKQIIDDTDETPS------------ 306

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L  ++ S    Q              +      +  +  I   I+ +I           
Sbjct: 307 ELVRKLPSGVSPQ--------------IMTFDDLAAESEFIIDKITQLI----------C 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRF 427
              +  DI +L R       I  + +     Y I            D L I+ L+ + + 
Sbjct: 343 SSAKFSDIAILSRTNSHLTAIASILK----KYGIPYQKLKSQPDWMDDLRIQFLLDILKV 398

Query: 428 ILSQEDDLSFVC--------------MLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQK 472
                D+                   +  S L    +  I  +      +  ++++Y+  
Sbjct: 399 CSLASDEKHNREFNTGDKWQSNFSILVTMSALKGIGDASIQALYKACGLKNLSIWKYLTM 458

Query: 473 FANCGISKFQHVIKYIHELIHIAQFC----------SPHDFFTLI--------LGAKKGR 514
             N        + K +                     P +    +        L     +
Sbjct: 459 VPNFEWPLGLSIKKKMENYTSNLYEMIENDQVHQLDDPMELLEKVASITNNLNLNPTYFQ 518

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA------- 567
               ++   E    L E       ++ N    +  +   LE Y       H +       
Sbjct: 519 SLSDAQSSLEFKTHLQEMAQVMKVSKSNKPPGISFVKWFLETYFDQTMVFHQSQQALQTT 578

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               V++ T+H+AKGLE P+VFL +     F    
Sbjct: 579 GPGTVKLSTIHSAKGLEFPIVFLTNGSMSNFPMDT 613


>gi|303229709|ref|ZP_07316495.1| putative ATP-dependent nuclease subunit B [Veillonella atypica
            ACS-134-V-Col7a]
 gi|302515606|gb|EFL57562.1| putative ATP-dependent nuclease subunit B [Veillonella atypica
            ACS-134-V-Col7a]
          Length = 1176

 Score =  125 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 124/1011 (12%), Positives = 267/1011 (26%), Gaps = 226/1011 (22%)

Query: 69   LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-- 126
            L S  + +K      +       +   + + L      F    D   +     S      
Sbjct: 96   LLSLVMKRKGAELGLLSQAAKRPEFSSVLQGLFSEFRSFRIGPDELESGAQRVSNGVLQK 155

Query: 127  -LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             L       + YEE  + +  +D  D I++    L +  +             H+ +D  
Sbjct: 156  KLQELALCMSAYEEELQLHGQID-GDPIMDLVHALPQSPLMENC---------HVFVDGF 205

Query: 186  QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
               + + +E++  L +                        I     A+PKR+L  K  + 
Sbjct: 206  HWFTPVHFELLYMLFDLAVESV------------------ITVDLPADPKRILANKGRHG 247

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                               RS  +IL               L ++  T +  +S    + 
Sbjct: 248  IFN----------------RSV-EILE-------------NLYKEYGTKLFFQSFTGHRG 277

Query: 306  GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              V      +   +      + + T+    L    +    A  +A  I + I +      
Sbjct: 278  TPV------LQSLEEHFFHGKHNTTAEHIPLVSAYNRECEADWVARDILSYIESSP---- 327

Query: 366  GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                  + +DI +++R   ++         +   Y I   G+ +  + +H   + +  L 
Sbjct: 328  ----NARYRDICIMLR---ESETYGDTLEKVFTRYGIPHFGDRQRPMNNHPLGELMTDLL 380

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSE---DDIFKICTQRHETETVYEYIQKFANCGISKF- 481
              +           +LK+ L   +    D++     +       +E         ++   
Sbjct: 381  GIVKHSYSRDIMFRLLKTDLTPLTREAVDELENYVLEFGIDHLQWERDNWSYMRYVAGLS 440

Query: 482  -----------------QHVIKYIHELIHIAQFCSPHDFFT------LILGAKKGRQQFI 518
                             Q ++  +      A     H           +L   +  Q+  
Sbjct: 441  DEEQPDAPRHARVNASRQAIMDILIPWFDFATSSDAHTGAEWCKHIYRVLEELQVPQRLY 500

Query: 519  S-RFGNEVIDVLDE-------------FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                  E    L+              FL+  +        +L E+I+ LE+    +  +
Sbjct: 501  EWSLEAERDGDLESKASHEQMYNAVIGFLDEMMVLTDTETLTLDEMIALLEEALDNVHYS 560

Query: 565  HSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  + V I T+  A     P V+++     VF                     +   
Sbjct: 561  MIPPSLDHVAITTIERAYSQSWPRVYVIGLNQGVFPQNM-------------GDEGLIKD 607

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
            + +        ++           N LLY+ MTRA   L I    +    +         
Sbjct: 608  REREALAEAGLVLAEGALPKAFNENFLLYLAMTRAEQHLTISYAGSNDEGEGLESSL--- 664

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
            ++            I++  +I       Y W  +   +   ER   +   +    +   L
Sbjct: 665  VIKRLQSLGFCTSPIEVPFTIQDGTEDEYLWRPYQSLSLLSERWGALFSGVPVSPLWWGL 724

Query: 744  FSPIKNDINEPYIL---------------------------------NPSTIDTKGKTNL 770
            ++  ++D      L                                 + + ++   +   
Sbjct: 725  YNWARHDGAYRPRLEDVSRGIRDNNDVPVIAPELVTGLFLKRGYMSGSVTRLEKYRQCPF 784

Query: 771  -----------ESLLSDNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKN 812
                          +        G  +H  L+ +               +      C + 
Sbjct: 785  KFYAQYGLKLEPRKVRSFGAPEIGTFLHANLERLGTQLLSEHKQWRDLDETAQQELCARV 844

Query: 813  AKLWPAKEY----------KNLLLSITRLLEN--PMMTTAMSCDSYSEVSVSGKINCP-- 858
            A     +            K +   + R L+     +    S  S+  + +      P  
Sbjct: 845  AADILEENRYDEDEKTAYDKAIEERVVRTLQKTVSRLVDWSSRSSFDTMYLEQDFGRPNG 904

Query: 859  --------KKDIIIS--GRIDQISIS--QQNIF--IFEYKTHHHVPQEIEHIPYTHIAQL 904
                     +D  +   G+ID+I       + +  + +YK+        + I Y    QL
Sbjct: 905  WDSIKVSLGEDRYLRLVGQIDRIDEYNRDGHTYGMVIDYKSGST-SVNAQEIYYGLKLQL 963

Query: 905  SIYEKILKDSYPNKSLV----CLLIYV-----SEPKVFIIPQNKLNKAFAE 946
              Y   L+ +Y            ++Y        P    +   +  KA A+
Sbjct: 964  MTYLLALESAYKKHHDQPMTPAAVVYTYVKNPRTPAGEPVSYEE-AKALAD 1013


>gi|262203374|ref|YP_003274582.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
 gi|262086721|gb|ACY22689.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247]
          Length = 717

 Score =  125 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 109/370 (29%), Gaps = 72/370 (19%)

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS- 122
            R+ LL + F     + ++  +         DL  +++ ++   I               
Sbjct: 133 ARWELLDNKFPVISRSARRAGLDTAT-DTIRDLASEIEWAKASLIDPEHYVEAVTRADRD 191

Query: 123 TLASLTLAKYLNAHYEEAKKKN---CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           T A       + +HYE+AK       +LDF+DL+I    +L        +  +       
Sbjct: 192 TPAPAAKVAAVYSHYEDAKVSADGDRMLDFDDLLIYMTQILVADPG---VAEEFRARYRC 248

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++DE QD + +Q  ++ +   D             L  VGD  Q+IY+F GA P  +L 
Sbjct: 249 FVVDEYQDVTPVQQGLLNAWLGD----------RDDLTVVGDANQTIYTFTGATPTYLLD 298

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             R           + +++ L   +RST  ++ + ++V             + T +R   
Sbjct: 299 FGRRFP--------EATVVRLIRDYRSTPQVVDLANRVIGAARGR-----IAGTRLRLVG 345

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            R                                    +       A  +   IS +I  
Sbjct: 346 QRDPGPEP---------------------------QFAEYDDEPKAATEVTAEISKLIDA 378

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      +   +I +L R    +               I               I+
Sbjct: 379 G----------VLPAEIAILYRVNAQSETYEQALTE----AGIPYQVRGGEAFFTRTEIR 424

Query: 420 DLMALGRFIL 429
             M     + 
Sbjct: 425 QAMRQLTVVA 434



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 58/239 (24%), Gaps = 38/239 (15%)

Query: 525 VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
               L+     T      + + +L EL +EL                 V + ++H AKGL
Sbjct: 470 RWQSLNALATLTDDLVAENAALTLPELTAELSARAAARHPPTVQG---VTLSSLHAAKGL 526

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   VFLV             K                                      
Sbjct: 527 EWDAVFLVGLIDGSLPINQAIKASW---------------------------------EE 553

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFHNDERVKKIKLTN 702
            EE  RL YVG+TRA + L I      +   ++ +R+ +   +        RV   +   
Sbjct: 554 VEEERRLFYVGVTRAREHLHISWPLARNEGGRARRRSRFLTDLVPDDSPASRVAPERKPR 613

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                                   +       +     K            P  +  S 
Sbjct: 614 RGPVCRVCGSRLMDSTATLLGRCADCPSDLDEELLIALKDWRRERAQAKQVPAFVVFSD 672


>gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
 gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella
           multacida DSM 20544]
          Length = 874

 Score =  125 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/448 (16%), Positives = 136/448 (30%), Gaps = 79/448 (17%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           ++              L +          +     + +    D K  L+K  DE      
Sbjct: 132 IRDLLSEDWPVRSVQSLIALL-----KEVRTAYGFQTDDAEADYKAALQKLMDEDPAAVR 186

Query: 113 RFNTYKMFKSTLASLT----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           +    + ++               + A Y+        LDF DLI+    L  + D++  
Sbjct: 187 KLAVTEHYQFYRQLFESWQVWGPTIAARYDARLHDVHGLDFTDLIVQAEALFAQEDIAV- 245

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
              K  +   +I IDEVQDTS +++ ++  +                L   GD  Q+IY 
Sbjct: 246 ---KWARRFLYINIDEVQDTSELEYRILSRIFG-----------SSRLLLCGDYFQTIYE 291

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + G+ P+ VLR  +           +   I L  ++RST  +L+                
Sbjct: 292 WRGSHPEVVLRAYQR--------DWQPRRIVLTENYRSTQILLSA--------------- 328

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                   +R  R      V           S  +              +       A+ 
Sbjct: 329 -------SYRWLRRNFPERVSALYPDGIHAVSAEHGLPIILKGAVSFPEE-------AQW 374

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY----KISV 404
           I Y I  +             +     + +L R  +    ++   R L        ++  
Sbjct: 375 IYYKIQQL------------PITDYGRVCILTRSNRYNKDLSLYFRNLGCHLPEAERLPF 422

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--QRHE 462
           +  D         +KD++A  + +++  D  SFV +L           I KI     R  
Sbjct: 423 MLLDEIKFFRRQEVKDVLAFLKLVVNPHDAASFVRVLNRFGKGIGPGTIRKISQEAYRRA 482

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHE 490
              + +Y+ + A      F  +++    
Sbjct: 483 GIRITDYLDEDARRTGDPFAVLLEAFEA 510



 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 63/245 (25%), Gaps = 37/245 (15%)

Query: 450 EDDIFKICTQRHETETVY-EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                 +     +    +    ++F       F  +   +    H A+   P      I+
Sbjct: 665 CATAEILTYAIEKNIRPHVGERREFMAKWQDVFAELADCVSGFRHEAERMRPWQLLAKIV 724

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR-AHSA 567
                   +  R   + I+ L +        ++     L  L   L     +        
Sbjct: 725 VDISIDAYYRRRGEEQRIENLRDLFRQARAMDEKEVRPLDALTRFLNYVTLSNTNLDAVT 784

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              ++ I+T+H AKG E   VF+       F                             
Sbjct: 785 KKQQIPIVTIHQAKGAEFDYVFVAGLQEGTFPGP-------------------------- 818

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                    +  K  +  E  RL YV +TR   QL +              R   D+  +
Sbjct: 819 ---------QAEKNESMAEEARLFYVAITRPKVQLFLSWCQTQHGHYTHMSRFLRDLPRE 869

Query: 688 SFHND 692
              N+
Sbjct: 870 YVQNE 874


>gi|86148764|ref|ZP_01067035.1| ATP-dependent DNA helicase Rep [Vibrio sp. MED222]
 gi|85833442|gb|EAQ51629.1| ATP-dependent DNA helicase Rep [Vibrio sp. MED222]
          Length = 260

 Score =  125 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 21/182 (11%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +A   +     F       L ++ T ++    +++ +    L   +   +++   +    
Sbjct: 97  KALGLKAGFSLFDDQDQLALLKELTERQIDGDKDLLRA---LMSTISNWKNDM--LTPDQ 151

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              +                  Y++  K    LDF+DLI     LLK       +R +  
Sbjct: 152 AKARAQGEQEQLFAFC---FEMYQKQMKAYNALDFDDLIAMPVLLLKTN---QEVRERWQ 205

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
             I ++L+DE QDT+  Q+E++R L  +             L  VGD+ QSIYS+ GA+P
Sbjct: 206 SRIRYLLVDEYQDTNTSQYELVRLLVGE----------RGRLTVVGDDDQSIYSWRGAKP 255

Query: 235 KR 236
           + 
Sbjct: 256 QN 257


>gi|317154187|ref|YP_004122235.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944438|gb|ADU63489.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2]
          Length = 1047

 Score =  125 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 90/631 (14%), Positives = 151/631 (23%), Gaps = 157/631 (24%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
           L++        +    L+          +   L S                     +  L
Sbjct: 524 LALTFTRRAAQELRDRLKTLRGENAELPQAGTLHSLCFDYWKHAYSETPIVLPEAAAKKL 583

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
             ++                    +            +  Y   K    ++D+ DL+   
Sbjct: 584 FAEVNPEFAGKNLDHHWTRYNLGRERLTDLPADLAEAHISYGNQKNHWDLVDYTDLLEF- 642

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             +L++     +           +L+DEVQD + +Q  VIR +      G         +
Sbjct: 643 --MLEQAGAPTF-----RMPYTQVLVDEVQDLTPLQLAVIRGIAGPSGEG---------V 686

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           F +GD  QSIY F GA            Q R T        + L  ++RS  +IL     
Sbjct: 687 FLIGDPNQSIYGFRGA--------AGDIQARLTELWPAIQSVTLTENYRSAQNILDCAGA 738

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +F                  H   R                             +    L
Sbjct: 739 LF------------PEAPKLHSHVRA----------------------------AASIHL 758

Query: 337 PQESSASILARRIAYTISNMIG--TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +       A  I+  I  +IG  + ++   G+   +   DI VLVR +   P+I    +
Sbjct: 759 FEGPDDIREATWISDRIKGLIGTTSHSLADAGEHGELAPGDIAVLVRFKALIPIIHKTLK 818

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  I     +         +  ++             +    L   L         
Sbjct: 819 ----RAGIPCSTPELEGFWQEPRVASILH------------AAERFLGMALGGV------ 856

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                    E V +        G       +                         + G 
Sbjct: 857 ---------EDVIDVPDHILAKGPVGLAAYLSETPPFDQFFWESRQFKELKHEFELRGGW 907

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           Q  ++    +      E        E+    SL                           
Sbjct: 908 QGLVNWVSLQS-----ELELVRRSAEKVQIMSLHA------------------------- 937

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
                AKGLE   VF+      +     +  +    +L    G                 
Sbjct: 938 -----AKGLEFEAVFMPACEEGILPFAGMDLLTAKITLTPGRGQRFP------------- 979

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                      E  RL+YVGMTRA   L + 
Sbjct: 980 -----------EERRLMYVGMTRAKQSLYLS 999


>gi|306831339|ref|ZP_07464499.1| UvrD/REP helicase subfamily [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426575|gb|EFM29687.1| UvrD/REP helicase subfamily [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 609

 Score =  125 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 85/570 (14%), Positives = 161/570 (28%), Gaps = 145/570 (25%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ +   YE+   +  V+D+E +II +  LL++     ++R  I  +   +LIDE QD  
Sbjct: 171 AEIIANEYEKLLNQAGVIDYETIIIESTKLLQENP---YVRECISAKYPWLLIDEYQDLG 227

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
               E++ +L ++         +    FAVGD  QSIY F GA P  ++           
Sbjct: 228 RPLHEMVLTLIDN---------TKIKFFAVGDPDQSIYGFQGAVPDYLIELADR------ 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I L  ++RS  DI+   + V +        + ++   +              
Sbjct: 273 ---PDVQKITLLNNYRSNQDIIDGSELVLNQQRGYVAKTRENEDAVYK------------ 317

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                  F  + +E    I    +   +  ++            
Sbjct: 318 -----------------------FIEVNEELDDQIEY-FVKRIVPGLVKNG--------- 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  ++I VLV    +   I    R       I                           
Sbjct: 345 -IPYEEIAVLVGNNSECNSI--ALR--CQKENIPYYIVKHQF------------------ 381

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           ++ D + +V    S +    +     I        TV   +       +   + + K + 
Sbjct: 382 NRSDFVKWVENCASWIEGDKDIVFSDIGDFWISLITVNGAMYLTDEEKLIIRERLYKVLV 441

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQ 548
           E        S   +F  +       +        +   D +D  +     +E   Y    
Sbjct: 442 E--SKDYEKSLTKWFEYVRKELCFDKYLEQNTYFQDEKDNIDNLMKEMSGSEYKEY---- 495

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                                N++ I T H++KGLE   + ++      F          
Sbjct: 496 ---------GIDKFSKIGKPENQIVISTRHSSKGLEFEAIVMMGMEEDHFPS-------- 538

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII---- 664
                                                E NRL +V ++RA    I+    
Sbjct: 539 --------------------------YYVKNDARLLAEANRLCFVCVSRAKRVCILMKSS 572

Query: 665 --CKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                +     +K  + + Y  +  S + +
Sbjct: 573 YYTIKTKNGPWRKEFKPSMYWNILYSKYGN 602


>gi|94314406|ref|YP_587615.1| putative ATP-dependent DNA helicase Rep [Cupriavidus metallidurans
           CH34]
 gi|93358258|gb|ABF12346.1| putative ATP-dependent DNA helicase Rep [Cupriavidus metallidurans
           CH34]
          Length = 591

 Score =  125 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/543 (13%), Positives = 148/543 (27%), Gaps = 136/543 (25%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L   YE   +   ++DF+D+ +     L++     W++  +  +   +++DE QD  
Sbjct: 174 LARLAEAYEAELRVRGLIDFDDMPLLAVRALRENP---WLQTALLAKYPVLVVDEYQDLG 230

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
                ++  L           S+   LFAVGD  QSIY F GA+P+ + R          
Sbjct: 231 AALHRMVMGLC---------FSAGMRLFAVGDVDQSIYGFIGAQPQMLQRLAER------ 275

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
              +   II L L++RS   I+     V  +      +       I          G+ +
Sbjct: 276 ---EDVEIIRLQLNYRSGHRIVAASGAVLGVDRGYAAVDGAPQGEI----FFHSLGGSYE 328

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                                             ++      +  ++ 
Sbjct: 329 V-----------------------------------------QARRLMTDLLPAAMAREP 347

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            ++  +I VL         I            +  +  D   L           L +++ 
Sbjct: 348 GVRYDEIAVLYP----AAWIGNAVAEAARHAGVPFIRTDGNALYPRS-----SRLMQWLE 398

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                        SP F+    +  ++       E       +     + + +     ++
Sbjct: 399 LSAQWCCGGWRTGSPRFSQLVSEGRRLFGDAIRAELDAAAFHRALVACLWEMRRPDMVLY 458

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           + +          F   +L               ++   L + LN      +        
Sbjct: 459 DWLQR--------FKRTVLDQH-----------AQLSPNLRDELNILGSFLERVSPDADY 499

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
               + ++            + + + T+H+AKG E   VFL                   
Sbjct: 500 AEMTVAEFAGEHTF------DRLMLSTLHSAKGREFRFVFLFGIDHGRLP---------- 543

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                         +     E  RL YVG++RA  ++ I     
Sbjct: 544 --------------------------RNGARPDEINESRRLFYVGISRARTEVHIAYTHG 577

Query: 670 TSN 672
            S+
Sbjct: 578 NSS 580


>gi|256271417|gb|EEU06478.1| Hmi1p [Saccharomyces cerevisiae JAY291]
          Length = 706

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 81/515 (15%), Positives = 158/515 (30%), Gaps = 101/515 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            +     E      V+  +DLII      +L      ++     +  +   +LIDE QD 
Sbjct: 156 PVIEKLVELMDNCKVMTNDDLIIRAKKYLELDSSDSDASSFTQDLHNKYKVVLIDEFQDL 215

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
                 +I  +              + L   GD  QSIY F G+  + + +   ++ K  
Sbjct: 216 YPSLAPLITMIC-----------KGKQLIMFGDTNQSIYGFLGSNNEIMSQLDNLHPK-- 262

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  ++++L  +FRST +I+++  K+ + P   + + +D+  T              
Sbjct: 263 ----NSTTVLKLFDNFRSTPEIISLASKIINRPLAEKQIIDDTDETPS------------ 306

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L  ++ S    Q              +      +  +  I   I+ +I           
Sbjct: 307 ELVRKLPSGVSPQ--------------IMTFDDLAAESEFIIDKITQLI----------C 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRF 427
              +  DI +L R       I  + +     Y I            D L I+ L+ + + 
Sbjct: 343 SSAKFSDIAILSRTNSHLTAIASILK----KYGIPYQKLKSQPDWMDDLRIQFLLDILKV 398

Query: 428 ILSQEDDLSFVC--------------MLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQK 472
                D+                   +  S L    +  I  +      +  ++++Y+  
Sbjct: 399 CSLASDEKHNREFNTGDKWQSNFSILVTMSALKGIGDASIQALYKACGLKNLSIWKYLTM 458

Query: 473 FANCGISKFQHVIKYIHELIHIAQFC----------SPHDFFTLI--------LGAKKGR 514
             N        + K +                     P +    +        L     +
Sbjct: 459 VPNFEWPLGLSIKKKMENYTSNLYEMIENDQVHQLDDPMELLEKVASITNNLNLNPTYFQ 518

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA------- 567
               ++   E    L E       ++ N    +  +   LE Y       H +       
Sbjct: 519 SLSDAQSSLEFKTHLQEMAQVMKVSKSNKPPGISFVKWFLETYFDQTMVFHQSQQALQTT 578

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               V++ T+H+AKGLE P+VFL +     F    
Sbjct: 579 GPGTVKLSTIHSAKGLEFPIVFLTNGSMSNFPMDT 613


>gi|315606173|ref|ZP_07881201.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315312131|gb|EFU60220.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 670

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/387 (15%), Positives = 125/387 (32%), Gaps = 72/387 (18%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTL--AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                      ++ +   A L       L   YE+AK +  V+DFED++I    +L++  
Sbjct: 149 VDAAHYAARVGRLGREVPAGLDASDMARLLDVYEDAKAERGVIDFEDILIYLCGMLQE-- 206

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             A +   + ++    ++DE QD +L+Q  ++                   +  VGD  Q
Sbjct: 207 -RADVAAVVRKQYRSFVVDEFQDVNLLQARLLDLWLG----------GRHDVCVVGDVAQ 255

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           +IYSF GA P+ +    R              I +L   +RST  I+++ + V    ++ 
Sbjct: 256 TIYSFTGASPQYLTGFGR--------KHPGARIAQLTRDYRSTPQIVSLANDVLERSQHR 307

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           +G                            V     +    + ++ +Y D   +      
Sbjct: 308 EG---------------------------TVRLSSQRDGGARVAYRTYEDDRAE------ 334

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A  +A  I+ +I             +    I VL+R    +              +I V
Sbjct: 335 -AEGVADQIAELIAGG----------MAPHSIAVLMRTNGQSQAFEEALGA----RRIPV 379

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                        ++  +A  R + +  ++ +   +++  L                E  
Sbjct: 380 AVAAGKPFFARDDVRTAIARLRAVAAAREEGALADLVRDVLSGVGWAPEAPSGQAGSERW 439

Query: 465 TVYEYIQKFANCGIS-KFQHVIKYIHE 490
           +    I  +A+   +      +  + E
Sbjct: 440 SNMNAIVGWADDSRATSLADFVSELDE 466



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 79/261 (30%), Gaps = 42/261 (16%)

Query: 500 PHDFFTLILGAKKG-RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
             D    +L       +    + G+E    ++  + +    + +  +SL + +SEL    
Sbjct: 412 LADLVRDVLSGVGWAPEAPSGQAGSERWSNMNAIVGWA---DDSRATSLADFVSEL---D 465

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
             I      + + V + T+H AKGLE   VFLV     +                     
Sbjct: 466 ERIAYQVEPDKSGVELATIHAAKGLEWDAVFLVGVAEGLLP------------------- 506

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                           +     +  +EE  RLLYV +TRA D L +    +   + +  +
Sbjct: 507 ----------------ISYAKTQQAREEERRLLYVAVTRARDLLSLSWARSRGTDGRGRR 550

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
           +    +       D      +   S ++    A+E            R    +  +  Q 
Sbjct: 551 KRSRLLDGIWPEADGVGAPKRKPRSSSRALNRAFEEEASPQAVELFGRLRAWRLEVSRQA 610

Query: 739 IPKKLFSPIKNDINEPYILNP 759
                       + +  +  P
Sbjct: 611 GVPPFAVFTDQTLRDIAVAMP 631


>gi|256544405|ref|ZP_05471780.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170]
 gi|256399937|gb|EEU13539.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170]
          Length = 862

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 75/549 (13%), Positives = 158/549 (28%), Gaps = 115/549 (20%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           LA  +   +     +N +++++ ++    DLLK      +   KI   I+ ++IDE QDT
Sbjct: 172 LALEIYLKWANFLDENDLINYQLILKKFYDLLKDP----FYGKKIRDRIDFVIIDEYQDT 227

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + IQ E+  SL              + L   GD+ Q++YSF GA PK +    +  + + 
Sbjct: 228 NTIQEEISFSLC-----------KGKNLMVFGDDDQALYSFRGASPKNLRDFDKTCKMK- 275

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               +K +   L +++RS  +I+    +     +                          
Sbjct: 276 --MKRKANFYHLDINYRSNQEIIDKSREFLVNSKAF------------------------ 309

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                     D +      +     +      + +     I   +  +            
Sbjct: 310 ----------DLEKIKNLRANDGEKNENSVVRARANEYENIENIVKFL-----------N 348

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           + I    I  L              +    ++ I+V+     +      I+  + +   I
Sbjct: 349 KKINLNQIAFLFPSLN--SDYPKSLQTYFENHGINVLNKSSKLFFKRREIRLCLYVLISI 406

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI--K 486
            S++                S  D +K   + +  + +             +    I  +
Sbjct: 407 FSKKPKKLTG----------SNPDKYKWTQETNFKKYLASIFDDKEFTKNEELNAFIKEE 456

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            ++   + +     +  F L +  +   ++         +  + +F +            
Sbjct: 457 KLNIEENKSYTDILYKAFGLEIFREILDKKIDKLNSIRQLSNIGKFTSILSDFTNLCGYD 516

Query: 547 LQELISELEQY-----------PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           +      ++               +      A  N V   T+H AKGLE  VVF+     
Sbjct: 517 INYYKKSVDLIYGYIFYLFKNSAISEFENFDAPKNSVIFSTIHQAKGLEYDVVFVSSLND 576

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                                                  L    +    + Y R  Y   
Sbjct: 577 NPRKDMR---------------------------AFSPKLEAKKESDFLKNYYRKYYTAF 609

Query: 656 TRASDQLII 664
           TRA + L++
Sbjct: 610 TRAKNLLVL 618



 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 30/182 (16%)

Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK-NFITSYCTKNAKLWPAKE 820
           +  K    L+     +++   G  +H L + +  L +     + I  +  +N        
Sbjct: 671 LKYKFIRVLDFKKEKSKSLEFGSKVHSLTEYLTNLKKENLSYHAINDFIKEN-------- 722

Query: 821 YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI 880
                    + +EN +         YSE      I   +   I+ G ID I        I
Sbjct: 723 -----KEFQKPIENFVNRNF--PIKYSE----MNIKLDRFSYILQGNIDIILEDG---TI 768

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV-SEPKVFIIPQNK 939
            + KT       +     ++  QL  Y  +L   Y NK +  +++Y   E K+  + ++ 
Sbjct: 769 IDIKTGKVDENNL----ISYKNQLLTYYNLL--VYNNKKVNKMILYFIEEDKLIEVEKSD 822

Query: 940 LN 941
            +
Sbjct: 823 FD 824


>gi|328464339|gb|EGF35754.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus MTCC 5462]
          Length = 393

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 127/420 (30%), Gaps = 81/420 (19%)

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              +  I            I           D   I+D +A  R +++ +DD+SF  ++ 
Sbjct: 1   NAQSRAIEEAF----VKSNIPYKMVGGHKFYDRKEIRDALAYFRLVVNPDDDMSFNRIVN 56

Query: 443 SPLFNFSEDDIFKICT-QRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQ 496
            P        + K+         ++ E          +           K I  L    +
Sbjct: 57  EPKRGIGNTSVAKLEAFANQHDWSLLEAAANAELSPISGKARGNLAEFGKMIQRLGQRRK 116

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRN------EQNSYSSL 547
             +  +    IL          +    E     + L+E L+ T         E       
Sbjct: 117 DLNVTEMMQAILDDSGYLGALRAANTLEAETRVENLEELLSVTQGFDARYQPENEDSDIF 176

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            + ++EL             +  EV +MT+H AKGLE PVVFLV     +F         
Sbjct: 177 VDFLAELALLSDQD--EVEEDAQEVTLMTLHAAKGLEFPVVFLVGMEEGLFPLS------ 228

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                          + +S  EE  RL YVG+TRA  +L +   
Sbjct: 229 ----------------------------RAAMDESELEEERRLAYVGITRAKQKLYLT-- 258

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                        +  M+Y    N+   + I+  +    D   A +  +  P     +R 
Sbjct: 259 -----------NAYARMLYGQRQNNPASRFIEEIDPELLDISGAAQPKSDIPFINRTDRA 307

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-DNQTFNRGLII 786
            +              +S        P  + P+     GKT+ E+    +++ +  G ++
Sbjct: 308 FSSP------------YSRHPETTGTPVTVKPAPTTGAGKTSWEAGDKVEHRKWGIGTVV 355


>gi|663258|emb|CAA88166.1| orf [Saccharomyces cerevisiae]
          Length = 542

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 79/497 (15%), Positives = 154/497 (30%), Gaps = 101/497 (20%)

Query: 150 EDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DLII      +L      ++     +  +   +LIDE QD       +I  +       
Sbjct: 10  DDLIIRAKKYLELDSSDSDASSFTQDLRNKYKVVLIDEFQDLYPSLAPLITMIC------ 63

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                  + L   GD  QSIY F G+  + + +   ++ K         ++++L  +FRS
Sbjct: 64  -----KGKQLIMFGDTNQSIYGFLGSNNEIMSQLDNLHPK------NSTTVLKLFDNFRS 112

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T +I+++  K+ + P   + + +D+  T              +L  ++ S    Q     
Sbjct: 113 TPEIISLASKIINRPLAEKQIIDDTDETPS------------ELVRKLPSGVSPQ----- 155

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                    +      +  +  I   I+ +I              +  DI +L R     
Sbjct: 156 ---------IMTFDDLAAESEFIIDKITQLI----------CSSAKFSDIAILSRTNSHL 196

Query: 387 PLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVC------ 439
             I  + +     Y I            D L I+ L+ + +      D+           
Sbjct: 197 TAIASILK----KYGIPYQKLKSQPDWMDDLRIQFLLDILKVCSLASDEKHNREFNTGDK 252

Query: 440 --------MLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQKFANCGISKFQHVIKYIHE 490
                   +  S L    +  I  +      +  ++++Y+    N        + K +  
Sbjct: 253 WQSNFSILVTMSALKGIGDASIQALYKACSLKNLSIWKYLTMVPNFEWPLGLSIKKKMEN 312

Query: 491 LIHIAQFC----------SPHDFFTLI--------LGAKKGRQQFISRFGNEVIDVLDEF 532
                              P +    +        L     +    ++   E    L E 
Sbjct: 313 YTSNLYEMIENDQVHQLDDPMELLEKVASITNNLNLNPTYFQSLSDAQSSLEFKTHLQEM 372

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA-------NHNEVRIMTVHTAKGLES 585
                 ++ N    +  +   LE Y       H +           V++ T+H+AKGLE 
Sbjct: 373 AQVMKVSKSNKPPGISFVKWFLETYFDQTMVFHQSQQALQTTGPGTVKLSTIHSAKGLEF 432

Query: 586 PVVFLVDTGSQVFSHKH 602
           P+VFL +     F    
Sbjct: 433 PIVFLTNGSMSNFPMDT 449


>gi|160431734|ref|YP_001551848.1| putative DNA helicase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
 gi|5852362|gb|AAD54022.1|AF105019_1 TrhI [Salmonella enterica subsp. enterica serovar Typhi]
 gi|16505828|emb|CAD09706.1| putative DNA helicase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|159885275|dbj|BAF92879.1| putative DNA helicase [Salmonella enterica subsp. enterica serovar
           Choleraesuis]
          Length = 618

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 89/544 (16%), Positives = 153/544 (28%), Gaps = 132/544 (24%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ-EINHILIDEVQDTSLI 191
           L   Y+   +K+ V D         + L +  V      K+    + H+++DEVQDT  I
Sbjct: 177 LFNTYQAICQKDHVAD--------LNALSRFVVGQMYSGKMQPLNLTHLVVDEVQDTDSI 228

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH-GAEPKRVLREKRINQKRATN 250
           Q+  I   T           +      VGD+ Q+IYSF      K   + ++  +     
Sbjct: 229 QYAWISLHTR----------AGVNTSIVGDDDQAIYSFRASGGVKIFQQFEKQFR----- 273

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +I  L   FR   +IL V   +             S           G  G V  
Sbjct: 274 ----PNIFYLNTCFRCEPEILKVAGALIEKNVYRYAKDLRSA---------KGGGGKVHF 320

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              V      Q                               I N+I  D I        
Sbjct: 321 RSYVDMDEQIQG------------------------------ILNLINQDPIG------- 343

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R       +  L           V+        D     D++ L  F   
Sbjct: 344 -----WAILSRGNAHLDQLESLIEQ-------PVLRYGGKSFWDEKETSDVLHLMAFFRH 391

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI---CTQRHETETVYEYIQKFANCGISKFQHVIKY 487
             D      +L   LF  +E+ + +       R  T        + +    +   +  ++
Sbjct: 392 SNDVRLMKRVLA--LFGENEEVLDQTALSMKGRKVTFGELNIPNESSLETRTLHSNFTRF 449

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             E     +           +     + +      +     LD    +    E+  + ++
Sbjct: 450 TQETREKVEIEKRFANLIKWMELSSIKMRTQKGSPSLSRIALDTCKQWA---EKTGWQNM 506

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               + +   P   K+      ++V + T+H +KGLE   V ++   +     K      
Sbjct: 507 INRAAAMCLGP--KKKDEEYTPDKVVLSTLHGSKGLEWKNVIIMSCNADQIPSKRSVG-- 562

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                            +   EE  RLL+VG TRA  QL +  +
Sbjct: 563 ---------------------------------QEAIEEERRLLFVGFTRAEQQLHVMWY 589

Query: 668 SNTS 671
            + S
Sbjct: 590 GDPS 593


>gi|151945539|gb|EDN63780.1| helicase in mitochondria [Saccharomyces cerevisiae YJM789]
          Length = 706

 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 81/515 (15%), Positives = 158/515 (30%), Gaps = 101/515 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            +     E      V+  +DLII      +L      ++     +  +   +LIDE QD 
Sbjct: 156 PVIEKLVELMDNCKVMTNDDLIIRAKKYLELDSSDSDASSFTQDLHNKYKVVLIDEFQDL 215

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
                 +I  +              + L   GD  QSIY F G+  + + +   ++ K  
Sbjct: 216 YPSLAPLITMIC-----------KGKQLIMFGDTNQSIYGFLGSNNEIMSQLDNLHPK-- 262

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  ++++L  +FRST +I+++  K+ + P   + + +D+  T              
Sbjct: 263 ----NSTTVLKLFDNFRSTPEIISLASKIINRPLAEKQIIDDTDETPS------------ 306

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L  ++ S    Q              +      +  +  I   I+ +I           
Sbjct: 307 ELVRKLPSGVSPQ--------------IMTFDDLAAESEFIIDKITQLI----------C 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRF 427
              +  DI +L R       I  + +     Y I            D L I+ L+ + + 
Sbjct: 343 SSAKFSDIAILSRTNSHLTAIASILK----KYGIPYQKLKSQPDWMDDLRIQFLLDILKV 398

Query: 428 ILSQEDDLSFVC--------------MLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQK 472
                D+                   +  S L    +  I  +      +  ++++Y+  
Sbjct: 399 CSLASDEKHNREFNTGDKWQSNFSILVTMSALKGIGDASIQALYKACSLKNLSIWKYLTM 458

Query: 473 FANCGISKFQHVIKYIHELIHIAQFC----------SPHDFFTLI--------LGAKKGR 514
             N        + K +                     P +    +        L     +
Sbjct: 459 VPNFEWPLGLSIKKKMENYTSNLYEMIENDQVHQLDDPMELLEKVASITNNLNLNPTYFQ 518

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA------- 567
               ++   E    L E       ++ N    +  +   LE Y       H +       
Sbjct: 519 SLSDAQSSLEFKTHLQEMAQVMKVSKSNKPPGISFVKWFLETYFDQTMVFHQSQQALQTT 578

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               V++ T+H+AKGLE P+VFL +     F    
Sbjct: 579 GPGTVKLSTIHSAKGLEFPIVFLTNGSMSNFPMDT 613


>gi|237737235|ref|ZP_04567716.1| UvrD/REP helicase [Fusobacterium mortiferum ATCC 9817]
 gi|229421097|gb|EEO36144.1| UvrD/REP helicase [Fusobacterium mortiferum ATCC 9817]
          Length = 518

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 130/342 (38%), Gaps = 45/342 (13%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  ++Y+  W +      +    +       +  + ++ + +    + + +   
Sbjct: 87  GAGSGKTRTIVYRTAWLIENGVSEE-KILMVTFTRKASEEMKERLKNILNVEELKTVVTT 145

Query: 66  FSLLSSFFLTQ--------------KFTPQKNIITQ----EINKKSPDLKEKLKKSQDEF 107
           F    +  + +              +   +K ++      E+NKK       +++  +  
Sbjct: 146 FHSFCARLIFKYKALFEVDNLNIMEEGEREKILLKIVERFELNKKYKGKFYDIEELSNRL 205

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            K+++     +          + K + + Y + KK   V +++DL+       K+     
Sbjct: 206 EKLQNARLRLEDIFPKEHIDDIIK-IKSEYRKYKKIKNVYEYDDLVEIVIKKFKEN---R 261

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
                I  +I++I++DE QD++L Q E+++ L  +           + L  VGD+ QSIY
Sbjct: 262 EFLKIIRDKIDYIVVDEYQDSNLAQRELLKLLVGED----------KNLMVVGDDYQSIY 311

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA+   +L+      K          +I+L  ++RS+ +I+   +++ +  +     
Sbjct: 312 GFRGADFTNILKFGEDFPK--------AKLIKLEKNYRSSEEIIAYTNRIANNFKIKYNK 363

Query: 288 ----SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
               +      +   S +  +     + E++++  +     +
Sbjct: 364 KIYGTGRRGERVHINSFKDEEKEGRYICEKILAYKEKFPFEE 405


>gi|167737949|ref|ZP_02410723.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 14]
          Length = 610

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/382 (16%), Positives = 115/382 (30%), Gaps = 38/382 (9%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
              +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239 AAAIWRDERGVLGTLLADAQPSLNQRSHKPEAVSEALDAWARYFEQASAVAALPRAALKL 298

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
             +  +    +          +  +  +     +       +        L  A    A 
Sbjct: 299 TQSALEKATKKGGATPRHAFFDVAQALEAAVAALEAAQRA-RWLSLVEQWLDAAP---AE 354

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
             + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 355 LAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412 DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L ++ RST  I+   ++VF     A  L       +R         G+      V +
Sbjct: 452 RYTLAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLVDA 503

Query: 317 QHDSQCNPQQESWTSYF--DSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQA 373
                       WT     D L +  +    A   A  I+ ++      +       + A
Sbjct: 504 TDPLAGAGDFRIWTLPVGDDVLTKRDAQRHAAHACAAEIARLMRGAREHAVTLGGEPLAA 563

Query: 374 KDILVLVRKRKDTPLITFLTRF 395
             I VLV+  +   L+  +   
Sbjct: 564 SGIAVLVQTHRQGSLVKRVLAA 585


>gi|302878653|ref|YP_003847217.1| ATP-dependent DNA helicase, RecQ family [Gallionella
            capsiferriformans ES-2]
 gi|302581442|gb|ADL55453.1| ATP-dependent DNA helicase, RecQ family [Gallionella
            capsiferriformans ES-2]
          Length = 1707

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 60/305 (19%), Positives = 107/305 (35%), Gaps = 48/305 (15%)

Query: 149  FEDLIINTNDLLKKR-----DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
            F+++I N  +LL+       D S  +R K+ Q   +IL+DE QD    Q+++I +LT   
Sbjct: 1196 FDEIIRNAINLLQGNGRLGEDDSDELRDKLLQGYRYILVDEYQDIDADQYDLISALTGRV 1255

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                    S  T+ AVGD+ Q+IY F     + + R +   Q +            L  +
Sbjct: 1256 QA---DRDSKLTIMAVGDDDQNIYEFRKTSNEFIKRFQEDYQAKIE---------YLIEN 1303

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            +RS++ I+   +++ S       L ++    I  R       G  +  + +V        
Sbjct: 1304 YRSSSHIIAAANQIISDNPER--LKQEHPIRINFRRQTDFYGGRWEKLDSLVKGR----- 1356

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                        +   S A+I A+     +  +                  D  +L R  
Sbjct: 1357 ---------VHVVRCSSDANIQAQMAMAEVRRLFE--------LLPSANWGDFAILARSH 1399

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL---MALGRFILSQEDDLSFVCM 440
            K    +    R       I  V  +     ++L +  L     L R +L+    L     
Sbjct: 1400 K----LLTPIRAYCELNGIPCVQIENGRTAENLKLNQLREGQLLIRLLLNSRRKLVAKRT 1455

Query: 441  LKSPL 445
            L   +
Sbjct: 1456 LVRWI 1460


>gi|302553995|ref|ZP_07306337.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302471613|gb|EFL34706.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 447

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 116/373 (31%), Gaps = 53/373 (14%)

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT H +KGLE  +V +      ++     +   +        G+   +            
Sbjct: 1   MTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPG--------- 51

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM---------- 684
                  +   E  RL YV  TRA ++L++      +++     R   ++          
Sbjct: 52  -------ALLAEERRLFYVAATRARERLVVTAVKAPADDGDQPSRFLTELGVEPRDVTGR 104

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                     V +++ T    +      E +           +E  + L+      +   
Sbjct: 105 PRRPLSVAALVAELRATTVDPRVSDALREAAARRLARLAALADEDGRPLVPSAHPYRWWG 164

Query: 745 SPIKNDI-------NEPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRGLIIHK 788
                +        ++P +L+ S +D       L+  L                G ++H 
Sbjct: 165 MFEPTESKVPLRNRDQPVVLSGSALDQLANTCALQWFLGREVKADAPATAAQGFGNVVHV 224

Query: 789 LL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
           L  +V            +            +A     +E  N  +++ R L+  +M    
Sbjct: 225 LADEVASGHTPADLSVLMERLDSVWNALAFDAPWKSDQEKDNARVALERFLQWHVMDRTG 284

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTH 900
                SE      ++     + I G++D++        ++ ++KT    P   E     H
Sbjct: 285 RTPVASEHDFDVTLDAGDYQVRIRGQMDRVEADGDGRAYVVDFKTGKQAPTGKE--VERH 342

Query: 901 IAQLSIYEKILKD 913
             QL++Y+  +++
Sbjct: 343 -PQLAVYQLAVRE 354


>gi|46203724|ref|ZP_00051089.2| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 449

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 77/479 (16%), Positives = 158/479 (32%), Gaps = 44/479 (9%)

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID---VLDEF 532
                 + V++ +  L   A   +PHD  +  + A   R     R           +D F
Sbjct: 1   MNHPVARPVLERLQALAKRALGTTPHDILSQAVDALMLRPVVQQRHDGHAERALANIDLF 60

Query: 533 LNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           L  +         +    + +  E    T++    A    V ++T+H +KGLE PVV  +
Sbjct: 61  LEMSRPFAVRGLRAFAGAMRAAWEGRTRTVEGRPDAQEAAVSLLTMHASKGLEWPVVIPI 120

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
           +T ++  +        +  +L D     ++ P    R     + ++  K+    E  RL 
Sbjct: 121 NTTTRTKA--------VSGALVDRASNCLYCPVFGVRPAGYDEALEAEKREVGNERVRLW 172

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YV  TRA + L++ + +                    +     +    L +   +   + 
Sbjct: 173 YVAATRARETLVLTRFAEPGASTS-------------WSAVVDLGLADLPSIDVERLPVG 219

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-NPSTIDTKGKTNL 770
                    N         +     ++   +   P + D   P     P  ++       
Sbjct: 220 TPAVAPEFANGQTREIFAAEAAAVARQRRLRWIVPSRGDAAGPETSGAPGLVEGGTDGGR 279

Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSI 828
                   +  RG++IHKLL+ I T    +R+    +     +   P  A        S+
Sbjct: 280 GPGGRPTGSRERGILIHKLLEEILTGEXERRRRSRRAPALARSSSRPRRAGRVTAESASV 339

Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS----QQNIFIFEYK 884
           TR L  P +         +E+ V G  +   +D   +G +D I+           + ++K
Sbjct: 340 TRALGLPEIAGI-RERLQAELPVFGFESLADEDQATAGVVDAIACDAVGKPD--IVVDWK 396

Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
           +        E +   +  Q++ Y               L+++V+  +V  + +  +   
Sbjct: 397 SDVDP---AEAVLADYRRQVARYLLATGARL------GLIVFVTSGRVVPVTRAAMADV 446


>gi|296454510|ref|YP_003661653.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
 gi|296183941|gb|ADH00823.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301]
          Length = 524

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 107/325 (32%), Gaps = 58/325 (17%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLA--KYLNAHY 137
           +    T        D+  ++  ++   + + D         +   A L  A    + + Y
Sbjct: 138 RATARTDADPLTVRDVLAEINWAKISLVAVEDYARACAIAHRQPPAGLDTARFADVYSAY 197

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           E+ K     +DF+D+++    ++     +A    +I   I  + +DE QD S +Q  ++ 
Sbjct: 198 EQEKTSRGEIDFDDILLLVCHIMDDFPEAA---AQIRSTIGWLTVDEYQDVSPLQHRLLT 254

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        +  R +  VGD  Q+IYSF GA    +LR            G   + 
Sbjct: 255 L-WLGGGGPDGKSAMNRNVCVVGDPAQTIYSFAGASSWDLLRFADEF-------GPLAAD 306

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           + L   +RST +++ + ++V +   N           ++  S+R                
Sbjct: 307 VNLNTDYRSTPEVVNLANRVLAAAPNR-------EDYLKLVSARESGPRVT--------- 350

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                                  S    A+ +A  I+ ++              +  D  
Sbjct: 351 ------------------RTAYESDMEEAQGVAARIARLVANG----------AKPSDCA 382

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKI 402
           +L R     P+     R  +  Y++
Sbjct: 383 ILTRINAQQPVFGAALRAARLKYRV 407



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 36/128 (28%), Gaps = 35/128 (27%)

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                  + LE          + +   V I T+H +KGLE   VFL+     +  +    
Sbjct: 420 DDAASKRALLEAMGLDATGLAANDDPGVTISTIHASKGLEFKHVFLIGCSEGLLPYGSP- 478

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL+YVG+TRA D L +
Sbjct: 479 ----------------------------------ETGDALEEERRLMYVGITRAEDSLHL 504

Query: 665 CKHSNTSN 672
                   
Sbjct: 505 SYARTKDG 512


>gi|289805215|ref|ZP_06535844.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 176

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 65/241 (26%)

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +    LL++ D    +R +   +I ++L+DE QDT+  Q+E+++ L              
Sbjct: 1   MLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGQ----------R 47

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
                VGD+ QSIYS+ GA P+ ++   +              +I+L  ++RS+  IL  
Sbjct: 48  ARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA--------LQVIKLEQNYRSSGRILKA 99

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + + +   +       S                                   E      
Sbjct: 100 ANILIANNPHVFEKRLFS-----------------------------------ELGYGAE 124

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
             +   ++    A R+         T  + ++      Q KD  +L R    + +     
Sbjct: 125 LKVLSANNEEHEAERV---------TGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFL 175

Query: 394 R 394
            
Sbjct: 176 M 176


>gi|222831879|gb|EEE70356.1| predicted protein [Populus trichocarpa]
          Length = 345

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 106/340 (31%), Gaps = 50/340 (14%)

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQ 471
            D   IKD++A  R I +  +DLSF  ++  P        I K+      +  ++ E I+
Sbjct: 1   YDRKEIKDVLAYLRLISNPNEDLSFARIVNEPKRGIGATTIDKLRDFADLQGVSLMEAIR 60

Query: 472 KF-----ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
                  A    +K       I  L  + +F S  +    +L     RQ        E  
Sbjct: 61  DIELSSIAPKTAAKLTDFRTMILGLQQMQEFISLSELVEEVLEKTGYRQVLKEDKTLEAQ 120

Query: 527 ---DVLDEFLNFTLRNEQN------SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
              + ++EF+      E+          ++   +++L           S    +V +MT+
Sbjct: 121 SRLENINEFITVAQNFEKETEKADPEDQTIIAFLTDLTLVADVDSLDESDLGEQVTLMTL 180

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H+AKGLE P+VFL+     +F H    +                                
Sbjct: 181 HSAKGLEFPIVFLIGMEEGLFPHSRSLQDEDEMEEERR---------------------- 218

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN-DERVK 696
                       L YVG+TRA  +L +      S   ++N       + +      ER  
Sbjct: 219 ------------LAYVGITRAEKRLYLSHARMRSLYGRTNANLESRFLAELPEEVLERTG 266

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
           K               +         P   + +  + +  
Sbjct: 267 KKPKPLPWEDRPVPQGKAVIGRSVTKPTAMKTSGAESLGW 306


>gi|167893640|ref|ZP_02481042.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           7894]
          Length = 318

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 112/338 (33%), Gaps = 38/338 (11%)

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           A   + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ 
Sbjct: 8   AELAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFA 64

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +  ++                LF VGD KQ+IYSF  A+                   + 
Sbjct: 65  IFDTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARA 104

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
            +   L ++ RST  I+   ++VF     A  L       +R         G+      V
Sbjct: 105 SARYTLAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVR--------AGSRVRAPLV 156

Query: 315 VSQHDSQCNPQQESWTSY--FDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVI 371
            +            WT     D L +  +    A   A  I+ ++      +       +
Sbjct: 157 DATDPLAGAGDFRIWTLPAGDDVLTKRDAQRHAAHACAAEIARLMRGARERAVTLGGEPL 216

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A  I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I + 
Sbjct: 217 AASGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAIDAP 272

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
            D       L S  F      ++++     E + +   
Sbjct: 273 GDLRRLRSALASDWFGLDAAALWRLEQGDAEQDGIDAA 310


>gi|254370665|ref|ZP_04986670.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151568908|gb|EDN34562.1| hypothetical protein FTBG_00457 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 497

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 80/538 (14%), Positives = 150/538 (27%), Gaps = 124/538 (23%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +I     L +K         ++    +HI+IDE QD + +Q  ++R L            
Sbjct: 1   MIYLPAKLFEKD---KNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVG---------- 47

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADI 270
               + AVGD  Q+IY + G+ P  +L   K+          +      L  +FR    I
Sbjct: 48  RTTYVMAVGDVDQTIYQWCGSTPYYMLEGFKKDF--------KGVEQYTLSYTFRYGDLI 99

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
             + + +    +        +   +                                   
Sbjct: 100 SLMANNIIVNNKKRHNNLCITYPKLNK--------------------------------- 126

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                   + S    + ++   +  +I             + A DI +LVRK   T +  
Sbjct: 127 ------ATDISILDSSDKVVLKLKALIQNG----------VDASDIAILVRKYNSTTVFE 170

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF---------VCML 441
                    + ++        +      K +                           ML
Sbjct: 171 LS----CLYHDLAYSIVADKNIFSENLFKAIYGYLMLFNKGYGFDKHTLEQRVEFIKAML 226

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF---QHVIKYIHELIHIAQFC 498
             P     +D   K+ +Q     +            + K    ++++   +   +I    
Sbjct: 227 DYPSLYLKKDLKQKLASQIASDISQAANCIAALKETVDKAFKQKNILAISNSWRNIFNNV 286

Query: 499 SP---HDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                      IL +    +Q     G         + +   +   +   ++L E I  L
Sbjct: 287 RIKKADKAIDFILQSLDLEKQISKVSGETHSSKSKLQIIEGMVSFAKGKKNTLIEFIELL 346

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            Q      + + +N N+++IM++H AKGLE   V + D     F      K+        
Sbjct: 347 YQLYTRSNQQNQSNPNQIQIMSMHRAKGLEWDYVVVHDATEGGFFGDKNTKV-------- 398

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                         EE  RL YV +TR    L I    + + 
Sbjct: 399 -------------------------DDEIIEEERRLFYVAITRVKKHLFIVSSDDITR 431


>gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
 gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC
           15579]
          Length = 855

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/317 (18%), Positives = 109/317 (34%), Gaps = 68/317 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +   LDF DLII   DL +   ++ +      Q+   I IDEVQDTS +++ ++
Sbjct: 197 YDKKLYERHGLDFNDLIIKVYDLFQNDRIATY----WKQKYKFIHIDEVQDTSEVEYNIV 252

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                +   GD  Q+IY + G+ P  +  + R              
Sbjct: 253 SKLF-----------KNNNIMISGDYYQTIYEWRGSNPSIIFDKYR--------KEYNPE 293

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I    ++RS+ +IL      F I    QG++E     I  ++                 
Sbjct: 294 FIVFDKNYRSS-EILLKASYEFLINAFGQGVNEIYKEGIEPKA----------------- 335

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                       +   +D + +       A  I   I ++             +     +
Sbjct: 336 ----NIKGDLIEFKKAYDFMEE-------AAFIFNRIKSL------------NLENLSRV 372

Query: 377 LVLVRKRKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +L R  +    ++   + L +      +I  +  D F       IKD++A  + I++  
Sbjct: 373 AILTRNNRINIALSEKFKILNSKLPKEERIGFLLVDEFKFFRRGEIKDVLAYLKLIVNDF 432

Query: 433 DDLSFVCMLKSPLFNFS 449
           D+ S   +LK       
Sbjct: 433 DNNSLKRILKKFGKGIG 449



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 68/205 (33%), Gaps = 39/205 (19%)

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
             I KFQ + + I  L  ++   +P D    I+   K ++ +  ++    I+ L EF   
Sbjct: 674 KYIKKFQPIYEEITNLKELSYIKNPKDIIGEIVNKTKIKEIYKDQYTK--INNLREFFVI 731

Query: 536 TLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               E         LI  L       +        +  V I+TVH AKG E   VFL   
Sbjct: 732 AKEIENKETCPRDNLIEFLKITSLSNSELDRMLIKYPRVPIITVHQAKGSEFDYVFLAGL 791

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            + +F +                                      +K+  + E  RL YV
Sbjct: 792 QNNIFPN-----------------------------------YMAVKEGNEIEEKRLFYV 816

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ 678
            MTRA   L +       N +K+  
Sbjct: 817 AMTRAKKSLYLSFSEYEHNRRKAKS 841


>gi|241767543|ref|ZP_04765216.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241361609|gb|EER57981.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 317

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 102/270 (37%), Gaps = 19/270 (7%)

Query: 32  NKYVSLSMETGN---PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88
            ++++ +   G     T  K A  +  A     + +R  LL       K       + + 
Sbjct: 44  QRWLARAKALGGEANKTPQKAADAIIDALACDDLNQRLDLLRRALFVAKEDRLSKNLEK- 102

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
                       ++++ E  ++      +  +        LA+ L A +   K ++  +D
Sbjct: 103 --------FPAAQEAEPELQRLLTARRQHDAWLHQQRMARLARSLIAAFAAVKHQHGWVD 154

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL--TEDFFVG 206
             D+      +L    +S W++ ++D  I H+L+DE QDT+ +QW+ + +         G
Sbjct: 155 MNDVERTALVMLADPILSGWVQERLDARIRHLLVDEFQDTNPLQWQALHAWLAGYAGSGG 214

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
             +   P ++F VGD KQSIY F  AEP+  +  +          G    ++    + R+
Sbjct: 215 GASGQKPPSVFIVGDPKQSIYRFRRAEPQVFIAAQA-----FVRDGLGGDLLSCDHTRRN 269

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIR 296
              ++  V+      +     S     T  
Sbjct: 270 ATGVIAAVNHAMGTAQAQHETSGFRDHTTE 299


>gi|330972232|gb|EGH72298.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 517

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 80/604 (13%), Positives = 164/604 (27%), Gaps = 137/604 (22%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L   F     + +   +   ++  +    E L++ + +    R         +    +  
Sbjct: 37  LPDDFHVATKSERDRALRAALDDMAK-YPEPLREWEAKMNGYRQSILDRGRPEWLEINPE 95

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           LA  L   YE   ++  ++D+ED+ +     L++ +   W+R  +  +   +++DE QD 
Sbjct: 96  LA-RLAELYEGRLRRMNLIDYEDMPLLALRALRENE---WLRKALLAKFPVLVVDEYQDL 151

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
                +++  L           ++   LFAVGD  QSIY F+GA P R+ R         
Sbjct: 152 GKALHKMVLGLC---------FTTGMRLFAVGDPDQSIYGFNGARPDRLRRLSER----- 197

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               +    + L L++R    I+     +                   + +      G V
Sbjct: 198 ----RGVETVRLRLNYRCATRIVAASGALL-------------DEERDYDAVAGAPSGEV 240

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                                                          +I      +  + 
Sbjct: 241 FFHPLRGRYEAQASV--------------------------------LINELLPQALARH 268

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             ++  D+ +L         +            +  +  D   L           L  ++
Sbjct: 269 PHLRLGDVAILYP----AAWLGDTMVPAIQQAGVPFIRTDTNALYSRS-----SRLMHWL 319

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                         SPLF+   +    + +    ++T      +     +   + V   +
Sbjct: 320 EQCAIWCCGGWQSGSPLFSQLTNTGKHLFSNAIRSDTQAAEFHRGLITKLWASREVALPL 379

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              +                     R + ++  G E  D+ DE                 
Sbjct: 380 LGWL------------------TDFRDRLLAPLGAECPDLADEL-TILADFIDRISPEGD 420

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                L       K       + + + ++H+AKG E PVVF+                  
Sbjct: 421 SHGMCLGSLAGQSK-----GKDSLNLSSLHSAKGREFPVVFMFGADVGRMPRDGSTDP-- 473

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                                E  R+ YVG+TRA  ++ +    
Sbjct: 474 ----------------------------------EVAEARRVFYVGLTRAEVEIHMIYTQ 499

Query: 669 NTSN 672
             ++
Sbjct: 500 GRAS 503


>gi|226321177|ref|ZP_03796716.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
           burgdorferi 29805]
 gi|226233410|gb|EEH32152.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia
           burgdorferi 29805]
          Length = 359

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 106/359 (29%), Gaps = 70/359 (19%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 +  +A  I  +   +   S           I VL+R       +  + R     
Sbjct: 15  EDEIQESEFVANQIIELSRLEDFKSKK---------IGVLMRTNALFKNVEMIFR----R 61

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-T 458
             I    +          IKD+++    I++ + D   + ++  P     ++ + KI   
Sbjct: 62  QGIKYKVSGGTSFFQRKEIKDIISYLNVIINPKSDYDLLRIINVPRRGIGKEYLKKIRDI 121

Query: 459 QRHETETVYEYIQKFANCGI--------------SKFQHVIKYIHELIHI--AQFCSPHD 502
              +   +Y+ +                         +  + +I E  +       +  +
Sbjct: 122 ADKKGCCIYDALCDITFSFTNISSYDKALNKQVIESIEDFVSFIEEYQYKFSITKNTYSN 181

Query: 503 FFTLILGAKKGRQQFISRF------GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
               ++ + +     +S               ++ FL+     E   +  L++L S L  
Sbjct: 182 IIKEMIESIEYWGFLVSENPNSIKVAEYKYQNIEGFLSIIKNWESKQFGELRDLSSFLNY 241

Query: 557 YPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                        N  + +MTVH+AKGLE   VF +     +  H               
Sbjct: 242 IVLQSNEVSEEAENININLMTVHSAKGLEFDYVFFIAVEDNIIPHHR------------- 288

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                               I    +   EE  R+ YV +TRA D L+I   +    ++
Sbjct: 289 --------------------IIEDSEVDLEEERRVFYVALTRAKDSLVITMANKRKKDR 327


>gi|283783598|ref|YP_003374352.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
 gi|283441008|gb|ADB13474.1| UvrD/REP helicase [Gardnerella vaginalis 409-05]
          Length = 1397

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 83/541 (15%), Positives = 167/541 (30%), Gaps = 75/541 (13%)

Query: 14  ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
           + +  D+  L       +    S     G          L+         E      +  
Sbjct: 167 DALIDDVLALAADISCSMIGINS----RGESIDSTSKAILEIQKWNNAWIEHLQKAINCA 222

Query: 74  LTQK---FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            T +     P    + +  N       EK +    E+++  +     K ++S    L  A
Sbjct: 223 ETTEIIAKKPSSIKLRRGKNDSDEKYFEKCENYGKEYVEYLNITLKNKCYESCNNLLEAA 282

Query: 131 K------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           +       L   ++ AK++  +  F D  I    L+        I  +  ++ + +L+DE
Sbjct: 283 EKRNVLLELVLAFDAAKQRANMAQFSDFTIAAYRLVTHFPS---IAEQYRRQYSQVLLDE 339

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHS--------------SPRTLFAVGDEKQSIYSFH 230
            QDTS  Q  +I +L      G    S                  + AVGD  Q+IYSF 
Sbjct: 340 YQDTSTTQAMLIATLFHKKTNGVEEASVAAKTSENQDFLTTQQTNIAAVGDPFQAIYSFR 399

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA      + ++      ++         L  + R++  IL   + +             
Sbjct: 400 GASSGAFRKLEQALNIDQSS------EFSLTRTRRNSQLILKAANSI------------- 440

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
            T  +R  + R       ++  + +   D+                 Q      + R + 
Sbjct: 441 -TKPLRVPALRHSSSLATEVEVKNLQYLDNAPKGTFSVLNMP----TQYQEVEAVVRFVK 495

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
           Y   N +  +   ++   R      + VL R + + PL     +       +  +     
Sbjct: 496 YVKHNALSENDDTNSASAR------VAVLFRSKNNIPLYEEALQ----KAGLRTLTVGYS 545

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET------E 464
            L +   I+D++AL   +    +  + + +L +P F  + DD+  I              
Sbjct: 546 ALLEKPEIRDVLALLSVVADHTNTQALMRLLATPRFALNTDDLAAIANIATSKNIEYVFR 605

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            + +     A    SK+  V++                F   +L      + + ++   E
Sbjct: 606 ALVQAGLVNAETPRSKWSQVVREQQSQASQTNSIHGGVFVADVL-----LEAYETQLSEE 660

Query: 525 V 525
            
Sbjct: 661 A 661



 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 29/201 (14%)

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIFT--------LPEHKRKNFITSYCT--KNAKLWPAK 819
                   +   + G   H   +            +     +  + +     +N       
Sbjct: 1190 RPIPSVSSPASDLGTRFHAWAEQFVKAGCVNKNSIQYDVDETAVENVAETCENISQNAKS 1249

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS------I 873
              + LL+   RL+ +     A      +E  +   +     D II+G+ID I        
Sbjct: 1250 SERKLLIWKQRLITS---KWAHRRPIAAEQPIVAHVP-ELGDQIINGKIDAIFAGGLNPE 1305

Query: 874  SQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYV--- 927
                   I ++KT    P + + I    + QL  Y  +L      P  ++   L YV   
Sbjct: 1306 DPSKLYTIVDWKTGR-KPTKPQDIALK-LGQLDWYRLLLSLMTKVPLDAIDATLYYVNIS 1363

Query: 928  -SEPKVFIIPQNKLNKAFAEI 947
                +     Q   ++  AE+
Sbjct: 1364 DECEREIHAEQKTKDEILAEL 1384



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVV 588
           D +L         +  +L   +S +        +  S +    V +MT+H +KGLE P V
Sbjct: 754 DAYLQEMSDF---TTPTLHGFMSWIFNIDKINDQPSSVDEAADVVLMTIHQSKGLEWPAV 810

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +V      F       + ++ +    
Sbjct: 811 AIVGLNEGAFPSNQGDNLRVIATQQSG 837


>gi|227497413|ref|ZP_03927645.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
 gi|226833089|gb|EEH65472.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434]
          Length = 1156

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 101/1054 (9%), Positives = 269/1054 (25%), Gaps = 193/1054 (18%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            ++   L+         ++        ++            G+   +  + +L        
Sbjct: 67   RDALILAPTRGRAEQLRE---RAAQLLAGQGSGAVRVRTPGSYAFMVLSTSLSSRPDPLP 123

Query: 62   IEERF-SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR--DRFNTYK 118
                         L Q   P            S   + +L+       ++          
Sbjct: 124  APVLLVGAEEDAALAQMLHPAHWQPLPPEAVTSRAFRSELRNLLARAGELGVGAAELAEL 183

Query: 119  MFKSTLASLTLAKYLNAHYEE-------AKKKNCVLDFEDLIINTNDLLKK-RDVSAWIR 170
              +  +     A  L   ++         + +   +D   +     + L++       + 
Sbjct: 184  AEELDVEIWRQAVPLLRAWDAQGRPSSSRRSQTRKMDSARIQDRAREALERWNADGVQVP 243

Query: 171  YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
              +    + +++D+ QD +     ++  L      G         +  +GD   ++ +F 
Sbjct: 244  PPVP---DLVIVDDYQDCTAATSRLLARLARPDSSGH-----RSQVVVLGDPDVAVETFR 295

Query: 231  GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            G  P  ++  +         +G   + + L   +R  A+++    +V+    +   ++  
Sbjct: 296  GGTPSLLVEAEDR-------SGLAATRMTLRTRYRGGAELV----RVWEDQADRVPVTGS 344

Query: 291  STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                    + +    G         S+  +    ++ +  +   +       + +AR   
Sbjct: 345  PVHRHPRLAEQEVSGGC------QPSETCTVVAGERTAAVTAIVASSACQETAHVAR--- 395

Query: 351  YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
                       + S           + V+VR       +    R L+         +   
Sbjct: 396  ----------VMRSEHVLHGTAWDQMAVIVRSAGAAQAVA---RELRRRGVPLSASSPAV 442

Query: 411  ILTDHLAIKDLMALGRFILS--------QEDDLSFVCMLKSPLFNFSEDDIFK------- 455
            +L    A   +  + R  L+             + + +L SPL   S  D+ +       
Sbjct: 443  LLRAEPAAAAVTDVARSALAGELGQDDAPAQREAVLRLLTSPLIGLSVLDLRRLRRRLRT 502

Query: 456  ------------------------ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
                                    +   R +         + A   +++ + V++  H+ 
Sbjct: 503  AFPQQEADEVLVRTACSLQLARALLEQLRQDPLVSQARSLERAARIVTEVRAVVQACHDA 562

Query: 492  IHIAQFCS------PHDFFTLILGAKK----------------GRQQFISRFGNEVIDVL 529
                   +        +       A                  G    ++      +DV+
Sbjct: 563  RPQGDEGTGQGRVDAEELLWAAWQASGCAEQWRQVSLGGDTGSGEDGVLAEAAEHDLDVV 622

Query: 530  DEFLNFTLRN-EQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
                       E++        +SEL  E  P             V ++T   A G +  
Sbjct: 623  TALFKRAEVWAERHPGQDAAVFLSELAGEVLPSDSVAPTGVRPAGVSVLTPAAAAGRQWE 682

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VV +       +    ++       L     +   +P+               +   + +
Sbjct: 683  VVAVTGVNRDQWPDLRLRDSLTRAGLL-VEAVTDRLPREPGGRRSAQMDRVSARAQVRAD 741

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR----------TWYDMVYDSFHNDERVK 696
              R+L   +TRA+ +L++    +  +                 +  D    +  +   + 
Sbjct: 742  ERRMLLAALTRATRRLVVTACQDEEHAPSGFFLEVARSAGVQVSDEDGQVLTSPDVGELT 801

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETI----------KQLMDEQKIPKKLFSP 746
               L   + +     +  +    E     +   +          +             + 
Sbjct: 802  LRGLVAELRRATVRGHLPTATEQERQQGRQAAALLASVAQAGIGQADPSSWPHGVATSAT 861

Query: 747  IKNDINEPYILNPSTIDTKGKTNLESLLSDNQT-------FNRGLIIHKLLQVIFTLPEH 799
                  E   ++PS +D      L   L  +            G ++H + +      E 
Sbjct: 862  ALVADGERVRVSPSDVDNLSTCPLRWFLQRHGGDTGTSGQQRLGNVVHAIAER--AQREG 919

Query: 800  KRKNFITSYCTKNAKLWPA----------KEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
             R   +                       +   +++  +   L +      +      E+
Sbjct: 920  LRGESLHELLEAQMPELSDPGTWIEQLARQRAHDIIDRLDSYLASVPGQVLVEKRIDVEL 979

Query: 850  SVSGKINCPKK---------DIIISGRIDQISISQ--------------------QNIFI 880
             +    +              + ++GRID+I + +                    + + +
Sbjct: 980  DLPLPPSEDTDDEPGRDGVIGVRLAGRIDRIEMVEALDEMQSGTQELDQLPAGQGRRVRV 1039

Query: 881  FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
             + KT      ++         QL+ Y   L+  
Sbjct: 1040 MDLKTGRRPAGDVARNA-----QLATYRMALEAL 1068


>gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 855

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 124/358 (34%), Gaps = 70/358 (19%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +   LDF DLII   DL +K  ++ +      ++   I IDE+QDTS I++ ++
Sbjct: 197 YDKKLYERHGLDFNDLIIKVYDLFQKDKITTY----WREKYKFIHIDEMQDTSEIEYNIV 252

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                +   GD  Q+IY + G+ P  +  + +              
Sbjct: 253 SKLF-----------KNNNIMISGDYYQTIYEWRGSNPTIIFDKYK--------KEYNPE 293

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I    ++RS+ +IL      F +    + ++E     I  ++                 
Sbjct: 294 FIVFDKNYRSS-EILLKASYEFLLNAFGKDVNEIYKEGIEPKA----------------- 335

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                       +   +D + +       A  I   I ++            +V +   +
Sbjct: 336 ----NIKGDLIEFKKAYDFMEE-------ATFIFNKIKSL------------KVEKLSRV 372

Query: 377 LVLVRKRKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +L R  +    ++   + L +      ++  +  D F       IKD++A  + I++  
Sbjct: 373 AILTRNNRINIALSEKFKILNSKLPKEERVGFLLVDEFKFFRREEIKDVLAYLKLIVNDF 432

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
           D  S   +LK       E  I +I  ++ E   +   +    +    ++    + +  
Sbjct: 433 DSNSLKRILKKLGKGIGERTIEEI--EKDENIKIGVRLTDLIHKNTQEYGDYYELLTR 488



 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 71/205 (34%), Gaps = 39/205 (19%)

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
             I KFQ + K I  L  ++   +P D    I+   K ++ +  ++    I+ L EF   
Sbjct: 674 KYIKKFQPIYKEITNLKKLSYIKNPKDIIGEIVNKTKIKEIYKDQYIK--INNLREFFVI 731

Query: 536 TLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               E    SS   LI  L       +        +  V I+TVH AKG E   VFL   
Sbjct: 732 AKEIENKEISSRDNLIELLKITSLSNSELDRMLTKYPRVPIITVHQAKGAEFDYVFLAGL 791

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            + +F +                                      +K+  + E  RL YV
Sbjct: 792 QNNIFPN-----------------------------------YMAVKEGNEIEEKRLFYV 816

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ 678
            MTRA   L +       N++K+  
Sbjct: 817 AMTRAKKALYLSFSEYEHNKRKAKS 841


>gi|159040530|ref|YP_001539783.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157919365|gb|ABW00793.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 1062

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 100/340 (29%), Gaps = 65/340 (19%)

Query: 93  SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
              +  ++ +   E   +   F        T A        +  Y    +K  ++D ++ 
Sbjct: 593 FHSVGLQILRENREAAGLPVDFRIADDADRTAARAEAGDD-HDAYLALLRKQDLVDLDE- 650

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
                  L        +          I +DE QD   +Q+E++R L+           +
Sbjct: 651 --LLTLPLALLRADQRLADSYRDRWRWIFVDEYQDVDEVQYELLRLLS----------PA 698

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
              L A+GD  Q+IYSF GA+    LR  +              ++ L  ++RS+A IL 
Sbjct: 699 DGNLCAIGDPDQAIYSFRGADVGYFLRFSQDF--------TDARLVRLNRNYRSSAPILA 750

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
              +  +      G   D                                        + 
Sbjct: 751 AAVQAIAPSSLVPGRRLDPARLDP---------------------------------EAP 777

Query: 333 FDSLPQESSASILARRIAYTISNMIGT------DTIFSNGKKRVIQAKDILVLVRKRKDT 386
                  SS +  A  +  TI  ++G       D+   +G+   +   D+ VL R     
Sbjct: 778 LIGRYAASSVADEASFVVRTIDELVGGLSHRSLDSGRIDGRTTALSFSDVAVLYRTDAQA 837

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
             +        +   I V       L D   + D+    R
Sbjct: 838 APVVDAL----SRANIPVQKRSHDRLRDRPGVADIARELR 873



 Score = 51.1 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 34/149 (22%)

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            G    + +   ++      +     L+  +S+L         A       V ++T+H AK
Sbjct: 906  GAVRPEDVRVAVDLLTPLARRCGDDLELFLSQLATGAEVD--ALDPRAQAVTLLTLHAAK 963

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE PVVFLV    ++   +                                        
Sbjct: 964  GLEFPVVFLVGAEDRLLPLRWPGSEP--------------------------------DD 991

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNT 670
                E  RL +VG+TRA D+L +   +  
Sbjct: 992  DAVAEERRLFFVGVTRAQDRLYVSHAARR 1020


>gi|254388944|ref|ZP_05004175.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
 gi|197702662|gb|EDY48474.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
          Length = 470

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 114/371 (30%), Gaps = 39/371 (10%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L      Q +  + +    +       L  A+TL+  S  +       
Sbjct: 119 AAVELRDRMALRLGGARGPQATTFHSFCYALVRAHQDADL-FAETLRLLSGPEQDVMVRE 177

Query: 68  LLSS-FFLTQKF--------TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+    L              +  + T+    +   +      ++   + +  R     
Sbjct: 178 LLTGQLDLEADGFDGHRWPDELRACLTTRGFADEVRAVL-----ARSRELGLGPRSLARF 232

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++       A    A Y +      VLD+ +L+     L ++   +           +
Sbjct: 233 AARTGRPDWRAAASFLAEYLDVLDMQGVLDYAELVHRAVLLAERAGPAPDF------PYD 286

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + +DE QDT   Q  ++ +L              RTL A GD  QSIY+F GA+   +L
Sbjct: 287 TVFVDEYQDTDPAQVRLLTALAG----------GGRTLVAFGDPDQSIYAFRGADVNGIL 336

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                 +      G+   +  L  S RS A +L     +       +  ++         
Sbjct: 337 DFPATFR---HPDGRPADVAVLTTSRRSGAALLGATRLLTRRMPLTRLPADKVRAHRELA 393

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---ARRIAYTISN 355
           ++R G  G V+ +       +              D +P    A ++   AR I      
Sbjct: 394 ATRPG--GRVETYTFPTPSAELDNVADILRRAHLEDGVPWHGMAVLVRAGARSIPAVRRA 451

Query: 356 MIGTDTIFSNG 366
           +          
Sbjct: 452 LTAAGVPLETD 462


>gi|213691669|ref|YP_002322255.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523130|gb|ACJ51877.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320457760|dbj|BAJ68381.1| putative DNA helicase [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 524

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 107/325 (32%), Gaps = 58/325 (17%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLA--KYLNAHY 137
           +    T        D+  ++  ++   + + D         +   A L  A    + + Y
Sbjct: 138 RATARTDADPLTVRDVLAEINWAKISLVAVEDYARTCAIAHRQPPAGLDTARFADVYSAY 197

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           E+ K     +DF+D+++    ++     +A    +I   I  + +DE QD S +Q  ++ 
Sbjct: 198 EQEKTSRGEIDFDDILLLVCHIMDDFPEAA---AQIRSTIGWLTVDEYQDVSPLQHRLLT 254

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        +  R +  VGD  Q+IYSF GA    +LR            G   + 
Sbjct: 255 L-WLGGGGPDGKSAMNRNVCVVGDPAQTIYSFAGASSWDLLRFADEF-------GPLAAD 306

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           + L   +RST +++ + ++V +   N           ++  S+R                
Sbjct: 307 VNLNTDYRSTPEVVNLANRVLAAAPNR-------EDYLKLVSARESGPRVT--------- 350

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                                  S    A+ +A  I+ ++              +  D  
Sbjct: 351 ------------------RTAYESDMKEAQGVAARIARLVANG----------AKPSDCA 382

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKI 402
           +L R     P+     R  +  Y++
Sbjct: 383 ILTRINAQQPVFGAALRAARLKYRV 407



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 36/128 (28%), Gaps = 35/128 (27%)

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                  + LE          + +   V I T+H +KGLE   VFL+     +  +    
Sbjct: 420 DDAASKRALLEAMGLDATGLAANDDPGVTISTIHASKGLEFKHVFLIGCSEGLLPYGSP- 478

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL+YVG+TRA D L +
Sbjct: 479 ----------------------------------ETGDALEEERRLMYVGITRAEDSLHL 504

Query: 665 CKHSNTSN 672
                   
Sbjct: 505 SYARTKDG 512


>gi|239501315|ref|ZP_04660625.1| UvrD/REP helicase [Acinetobacter baumannii AB900]
          Length = 552

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 104/653 (15%), Positives = 194/653 (29%), Gaps = 149/653 (22%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQT-LQQASQTQCIEERFSLLSSFFLTQKFT---PQKN 83
           V        L +E       K+ +  L   +     +       + FL +  +   P++ 
Sbjct: 4   VDLWQPADGLILEPNALRATKELERCLALTAGPGAGKTEMLAQKADFLLRTNSCAYPKRI 63

Query: 84  IITQEINKKSPDLKEKL-----KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY- 137
           +        S +LKE++           F          ++       LT    L A Y 
Sbjct: 64  LAISFKVDASKNLKERVHRRCGTDLASRFDSYTFHAFAKRIIDRFRPVLTGEDTLEADYK 123

Query: 138 ---EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
                  + +  + +EDL+     +LK+ D++   R  I Q   ++ +DE QD +  Q+E
Sbjct: 124 ISERRNGRSHNQISYEDLVPLAIQILKQSDIA---RNAIRQTYCYVFLDEFQDCTDKQYE 180

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++R              +   L AVGD KQ I  + GA                      
Sbjct: 181 LVRL---------AFQGTHIRLTAVGDVKQKIMGWAGALDGIFKTFSMDFNAI------- 224

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              + L  +FRS   +L + +++                                L    
Sbjct: 225 --PLTLYRNFRSKPLLLRMQNEIIR-----------------------------VLDPLS 253

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
           V   +     + E+    F +  +E      A  +   I+  I             I   
Sbjct: 254 VMPDEQLAGNEGEAHEIRFRNSREE------AEYLTDLITAWINNQQ---------IPPS 298

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQED 433
           +I +L+   K           L  +  I      +   +T   A + ++     + SQ  
Sbjct: 299 EIAILIS--KQPEHYGHHLIALLEEKNIPYRNEQQMQDITVEPAARLIVDYLSCLYSQCK 356

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
             +++ +    L     ++  ++  QR   + + E+ +  AN  I               
Sbjct: 357 PKAWIRLTN--LLIPFAEEYIQLDIQRDINQLIKEHRKNIANQPIE-------------- 400

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
            A + +  D  +  +               E ID L E ++ T    +        L+  
Sbjct: 401 -APYSNWWDCVSEFIKKIGKETLIALSPEYESIDHLKEIISSTKTRIEELLKVEPNLVKA 459

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           L  +              VRI+T+H +KGLE   V ++    Q F  K            
Sbjct: 460 LAHFSDDQ---------AVRILTIHKSKGLEFDSVIILGVEHQTFWGK------------ 498

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                          +E     +VG++RA  +LI+  
Sbjct: 499 ------------------------------IDEERCSFFVGVSRAKHRLIMTS 521


>gi|41410191|ref|NP_963027.1| hypothetical protein MAP4093c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41399025|gb|AAS06643.1| hypothetical protein MAP_4093c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 378

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 131/410 (31%), Gaps = 38/410 (9%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            +     L          +  + + ++ T +       ++L  A  T         L   
Sbjct: 5   LDGTEDRLAARRQRLRDALAGFDAATIATTHQFCQLVLRSLGVAGDTAAGVTLLDSLDEL 64

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS--LTLA 130
                         Q+ +      +E L+ ++D       +         + A+  L  A
Sbjct: 65  VAEIVDDLYLAHFGQDHDDPVLHYREALRLARDVVNNPSAQLRPLHPEPGSRAAVSLRFA 124

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + A  +  K++  VL ++DL+    D L      A  R ++ Q    +++DE QDT  
Sbjct: 125 NDVLAELDTRKRRLGVLGYDDLLTRLADALATEHSPA--RLRMHQRWPIVMVDEFQDTDP 182

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +QW+VI              S   TL  +GD KQ+IY+F G +    LR           
Sbjct: 183 VQWQVIDR----------AFSGRSTLILIGDPKQAIYAFRGGDIVTYLR----------A 222

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
           A        L  ++RS + +L  +  V    +        +     HR  R+        
Sbjct: 223 AETAGQKKTLDTNWRSDSALLQRLQVVLRGAQLGDPAIAVNDVAAHHRGHRLSGAPRND- 281

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
               +         ++       D L Q   A + A      I  ++     F     + 
Sbjct: 282 -PFRLRVVSRNTLGRRGIANLPIDELRQHIGADLAAD-----IRALLAAGATFDG---KP 332

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
           ++A DI V+V + +D             D  +  V      +    A +D
Sbjct: 333 LRAGDIAVIVERHRDAQACFTAL----CDAGVPAVYTGNSDVFTSQAAED 378


>gi|325978250|ref|YP_004287966.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325178178|emb|CBZ48222.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 609

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 85/570 (14%), Positives = 162/570 (28%), Gaps = 145/570 (25%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ +   YE+   +  V+D+E +II +  LL+++    ++R  I  +   +LIDE QD  
Sbjct: 171 AEIIANEYEKLLNQAGVIDYETIIIESTKLLQEKP---YVRECISAKYPWLLIDEYQDLG 227

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
               E++ +L ++         +    FAVGD  QSIY F GA P  ++           
Sbjct: 228 RPLHEMVLTLIDN---------TKIKFFAVGDPDQSIYGFQGAVPDYLIELADR------ 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I L  ++RS  DI+   + V +        + ++   +              
Sbjct: 273 ---PDVQKITLLNNYRSNQDIIDGSELVLNQQRGYVAKTRENEDAVYK------------ 317

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                  F  + +E    I    +   +  ++            
Sbjct: 318 -----------------------FIEVNEELDDQIEY-FVKRIVPGLVKNG--------- 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  ++I VLV    +   I    R       I                           
Sbjct: 345 -IPYEEIAVLVGNNSECNSI--ALR--CQKENIPYYIVKHQF------------------ 381

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           ++ D + +V    S +    +     I        TV   +       +   + + K + 
Sbjct: 382 NRSDFVKWVENCASWIEGDKDIVFSDIGDFWISLITVNGAMYLTDEEKLIIRERLYKVLV 441

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQ 548
           E        S   +F  +       +        +   D +D  +     +E   Y    
Sbjct: 442 E--SKDYEKSLTKWFEYVRKELCFDKYLEQNTYFQDEKDNIDNLMKEMSGSEYKEY---- 495

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                                N++ I T H++KGLE   + ++      F          
Sbjct: 496 ---------GIDKFSKIGKPENQIVISTRHSSKGLEFEAIVMMGMEEDHFPS-------- 538

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII---- 664
                                                E NRL +V ++RA    I+    
Sbjct: 539 --------------------------YYVKNDARLLAEANRLCFVCVSRAKRVCILMKSS 572

Query: 665 --CKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                +     +K  + + Y  +  S + +
Sbjct: 573 YYTIKTKNGPWRKEFKPSMYWNILYSKYGN 602


>gi|288905265|ref|YP_003430487.1| ATP-dependent DNA helicase [Streptococcus gallolyticus UCN34]
 gi|288731991|emb|CBI13556.1| putative ATP-dependent DNA helicase [Streptococcus gallolyticus
           UCN34]
          Length = 609

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 85/570 (14%), Positives = 162/570 (28%), Gaps = 145/570 (25%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ +   YE+   +  V+D+E +II +  LL+++    ++R  I  +   +LIDE QD  
Sbjct: 171 AEIIANEYEKLLNQAGVIDYETIIIESTKLLQEKP---YVRECISAKYPWLLIDEYQDLG 227

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
               E++ +L ++         +    FAVGD  QSIY F GA P  ++           
Sbjct: 228 RPLHEMVLTLIDN---------TKIKFFAVGDPDQSIYGFQGAVPDYLIELADR------ 272

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   I L  ++RS  DI+   + V +        + ++   +              
Sbjct: 273 ---PDVQKITLLNNYRSNQDIIDGSELVLNQQRGYVAKTRENEDAVYK------------ 317

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                  F  + +E    I    +   +  ++            
Sbjct: 318 -----------------------FIEVNEELDDQIEY-FVKRIVPGLVKNG--------- 344

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I  ++I VLV    +   I    R       I                           
Sbjct: 345 -IPYEEIAVLVGNNSECNSI--ALR--CQKENIPYYIVKHQF------------------ 381

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           ++ D + +V    S +    +     I        TV   +       +   + + K + 
Sbjct: 382 NRSDFVKWVENCASWIEGDKDIVFSDIGDFWISLITVNGAMYLTDEEKLIIRERLYKVLV 441

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQ 548
           E        S   +F  +       +        +   D +D  +     +E   Y    
Sbjct: 442 E--SKDYEKSLTKWFEYVRKELCFDKYLEQNTYFQDEKDNIDNLMKEMSGSEYKEY---- 495

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                                N++ I T H++KGLE   + ++      F          
Sbjct: 496 ---------GIDKFSKIGKPENQIVISTRHSSKGLEFEAIVMMGMEEDHFPS-------- 538

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII---- 664
                                                E NRL +V ++RA    I+    
Sbjct: 539 --------------------------YYVKNDARLLAEANRLCFVCVSRAKRVCILMKSS 572

Query: 665 --CKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                +     +K  + + Y  +  S + +
Sbjct: 573 YYTIKTKNGPWRKEFKPSMYWNILYSKYGN 602


>gi|51892445|ref|YP_075136.1| putative ATP-dependent DNA helicase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51856134|dbj|BAD40292.1| putative ATP-dependent DNA helicase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 631

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 111/363 (30%), Gaps = 51/363 (14%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
           +        E    LL           +    ++ ++       +  +    E   + D 
Sbjct: 123 RDRINPLLQEHAADLLGDLSDPWDLPTRVEQYSRALDAVRQGCADIEEGLPLEPDDLPDG 182

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                    T       + +   Y    +    LD+  ++      L +         + 
Sbjct: 183 VLYVPARIETPNL----RKVWRRYNRMLRARNYLDYPGMVTEAILALYREG---KTLQRA 235

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
              + +I++DE QDTS  Q E+I+ L  +             +  VGD  Q+IY+F+GA+
Sbjct: 236 RANLEYIIVDEYQDTSRAQEELIQLLVGERTS----------VTVVGDSDQAIYTFNGAD 285

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
              +L       +  +        + L  ++RS+A IL   ++V                
Sbjct: 286 IGNILHFAERILETGSAL-PVLEPVHLVENYRSSACILDAANRVLD-------------- 330

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                  RI   G  QL     +  +   + ++ +             A+  A   A  I
Sbjct: 331 -------RIHGPGRKQLVPYPGTVDEPVESYRRRNLEVVRVHAGSLDQAAFWA---ASEI 380

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
           + ++  +          I+  DI VLVRK  +        R       I     +R  + 
Sbjct: 381 ARLVTEE---------GIEPSDIAVLVRKDTEHAPQGRAVRLALERLGIRAEEQERDPIR 431

Query: 414 DHL 416
              
Sbjct: 432 SSH 434



 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 76/289 (26%), Gaps = 56/289 (19%)

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL--------IHIAQFCS 499
           ++  +I ++ T+     +    + +       + + V   +  L            +   
Sbjct: 375 WAASEIARLVTEEGIEPSDIAVLVRKDTEHAPQGRAVRLALERLGIRAEEQERDPIRSSH 434

Query: 500 PHDFFTLILGAKKGRQQFISRFGNE--VIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
            ++    + G      + I          +  D   + T           Q   +E    
Sbjct: 435 VYEVVRDLCGDPDYYGEDIGDMIERIAAGEFRDALGDVTPDEATALLREAQAAGAEFAGE 494

Query: 558 PPTIKRAHSANH------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                    A          V++ T+H+AKGLE  VVFL+    + F H     +     
Sbjct: 495 VVDFVFEQGAPDATPASLEGVQVRTIHSAKGLEFRVVFLMYLSDREFPHGAHPDV----- 549

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                             E  RL YVG+TRA ++L +       
Sbjct: 550 ---------------------------------AEERRLYYVGLTRAQERLYVLGQPGVR 576

Query: 672 NEK--KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
           NE    +   +    V+     D      +  +              H 
Sbjct: 577 NEDFFGAIDGSGVVTVHVEPWRDRSPSSEEAVDDETLRLIQEARRRQHD 625


>gi|167523216|ref|XP_001745945.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775746|gb|EDQ89369.1| predicted protein [Monosiga brevicollis MX1]
          Length = 654

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 72/182 (39%), Gaps = 26/182 (14%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
           ++Q E  ++                L+       HY    ++  ++D++D+++   +L  
Sbjct: 188 EAQQELRRLEQHSELSPENSDLYNLLSSTLPCYEHYAAVCEREGLIDYDDMLLKCEELFS 247

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           K          + +  +HIL+DE QDT+ +Q++++R L                LF VGD
Sbjct: 248 KAP-------HVVKPYSHILVDEFQDTNPVQYDMVRHLAH-----------SGNLFVVGD 289

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             QSIY +  A+     R                  + L  ++RST  IL++   + +  
Sbjct: 290 PNQSIYGWRAAQADGYRRIFADFP--------GTKQVSLAENYRSTGAILSLSSDLINQN 341

Query: 282 EN 283
           + 
Sbjct: 342 QE 343



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/458 (10%), Positives = 117/458 (25%), Gaps = 64/458 (13%)

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +GL +     ++           V+ +  ++       NP Q     +          
Sbjct: 228 EREGLIDYDDMLLKCEELFSKAPHVVKPYSHILVDEFQDTNPVQYDMVRHLAHSGNLFVV 287

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT---RFLKND 399
               + I                      +   +    R       ++          + 
Sbjct: 288 GDPNQSIYGW-RAAQADGYRRIFADFPGTKQVSLAENYRSTGAILSLSSDLINQNQELSR 346

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             +     +     +   I DL+A  R +L+ +D+ +F  +   P        +  +   
Sbjct: 347 CNLPYRMVNGVRFFEREEIADLVAYLRLVLNPDDNSAFTRVFNRPRRQLGAKALASLLES 406

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI- 518
               +T    +    +      +   + I +L          +    ++   + ++    
Sbjct: 407 AQTDKT--SLLVAAQHSSNKNARQFARIITDLRERLGHVDLPELVLHLIETIQFKEHLRR 464

Query: 519 ------SRFGNEVIDVLDEFLNFTLRNEQN------------------SYSSLQELISEL 554
                  R     ++ ++E + +    ++                       L +L   +
Sbjct: 465 SFADKDKRNYESRLENVEELVAYARNVQEQAQEAQHEAPLDSAQPLTPQDMGLAQLRLFM 524

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +Q             + + + TVH+AKGLE  VV +      ++ H + K          
Sbjct: 525 DQATLHSTADVEDQDDAITLSTVHSAKGLEWAVVAIPGVEDGLYPHANAK---------- 574

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM-----TRASDQLIICKHSN 669
                                    + +   E  RLLYVG+     TRA     +  H  
Sbjct: 575 ------------------RHRNPTKQVAALHEERRLLYVGIAMSRVTRARLPYPVTGHEK 616

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
                         ++   + +      +    + +  
Sbjct: 617 KPARSLQLLAMPIRVLGGVYPSQVCATPVPGQGAKDLG 654


>gi|315604923|ref|ZP_07879981.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313462|gb|EFU61521.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 585

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/470 (11%), Positives = 126/470 (26%), Gaps = 39/470 (8%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---------FGNEVIDVLDEFL 533
            V   + +L  +     P +    +  A     ++ SR         + ++ +D +   L
Sbjct: 55  EVASRLWDL-GMNGSNRPQERLWELWEAAGVADEWRSRAIASDESSGWYDDQLDAVVALL 113

Query: 534 NFTLRNEQNSYS-SLQELISELEQYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
                 +Q + + S  +  +EL                   V ++T   A G    VV L
Sbjct: 114 RVADVWQQRNPATSAAQFAAELASGTVPIDTISRVGVRPAGVEVLTPAQAMGRHWEVVVL 173

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  + +  ++   +   L  D G          R  ++  +    + +  ++  RL
Sbjct: 174 AGLQDGAWPNLRLRDRILRADLLADAGAGRTSVGEDGREELIDSVR-AARAAVLDDEYRL 232

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
               +TRA   +                     +       D                  
Sbjct: 233 FVAAVTRARRVVHAGAVRAEDAAPSVFFDLVARLAGTPRVGDLVPVDPVDAPLSLSGHIA 292

Query: 711 AYEWSTHHPENTPLERE----------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                   P++                E I      + +          D     +L+PS
Sbjct: 293 DLRARAAAPDDPADADLAATLLALLAREGIASAQPHRWLGAGGTPTSARDYRGDIVLSPS 352

Query: 761 TIDTKGKTNLESLLSD-------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
             +      L   L+        N   + G ++H + +        +    + +   +  
Sbjct: 353 QFERALVCPLRWFLTTVGAEGTANAAASLGTLVHAVAEENPHGTAEELTEALEARINELG 412

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873
                   +        +++N     +       +V V   +    + + I GR+D++  
Sbjct: 413 YNLDTWAGRVADRRAHAIVDN---LASYVVGVPGDVDVEETVEATVEGVTIRGRMDRLEH 469

Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
             + + + + KT                 QL+ Y+  L      +S+   
Sbjct: 470 VDEGVRVTDLKTGK---GGYTKASVRDNPQLAAYQMAL--IASGRSVAGA 514


>gi|302553994|ref|ZP_07306336.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
 gi|302471612|gb|EFL34705.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
           40736]
          Length = 512

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 120/383 (31%), Gaps = 37/383 (9%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + + +        Q +  + +    +     + L   + ++  S  +       
Sbjct: 107 AAVELRDRMAQRTGAARAPQATTFHSFCYALVRAHQDSDL-FVEPMRLLSGPEQDVSVRE 165

Query: 68  LLSS-FFLTQKF--------TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           LL+    L +            +  + T+    +   +  + ++       + D      
Sbjct: 166 LLAGQVDLERLGLANVRWPDELRACLTTRGFADEVRAVLARTRELGLGPDALDD-----F 220

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++       A    A Y +      VLD+ +L+     L ++ + +AW    +    +
Sbjct: 221 ARRTGRPDWRAAAAFLAEYLDVLDLQGVLDYAELVHRAVLLARRPEAAAW----LAARYD 276

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + +DE QDT   Q  ++ +L              RTL A GD  QSIY+F GA+   +L
Sbjct: 277 AVYVDEYQDTDPAQVRLLHALAG----------GGRTLVAFGDPDQSIYTFRGADVNGIL 326

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                  +     G+   +  L  S RS A +L     +       +  +E         
Sbjct: 327 DFPHAFPR---ADGRPAPVKVLRTSRRSGAALLAATRLLTQRMPLTRLPAEKVRAHRELA 383

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL---ARRIAYTISN 355
             R G  G V+ +    S  +              D +P    A ++   +R I      
Sbjct: 384 PVRDG--GRVEAYTYPTSGTELDNIADILRRAHLEDGVPWSEMAVLVRAGSRTIPTVRRA 441

Query: 356 MIGTDTIFSNGKKRVIQAKDILV 378
           +             V    +  V
Sbjct: 442 LTAAGVPVEVDGDDVPLRHEPAV 464


>gi|78045388|ref|YP_361638.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78033892|emb|CAJ19891.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 1103

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 84/599 (14%), Positives = 171/599 (28%), Gaps = 99/599 (16%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL--------AKYLNAHYEEA 140
           +    P L + +K  Q    ++ D     ++ ++                  L   YE  
Sbjct: 327 LGDPLPWLDQAVKTMQRAKDELLDAVAFTRVVEAGAVQADAERLALDRDLALLYRTYEAL 386

Query: 141 KKKNC-VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            + N  ++DF DLI+     L+     A     I     H+L+DE QD +    E+++++
Sbjct: 387 LRANGGLVDFGDLILLPAQALRAN--RAEFAPSI-GRFRHVLVDEYQDVNRASAELVKAI 443

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                           L+ VGD +Q+IY F GA  + ++R      +             
Sbjct: 444 AAQADS----------LWVVGDPRQAIYRFRGASMRNIVRFADDFPQH--------REFR 485

Query: 260 LPLSFRSTADILTVVDKVFS-IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
           L  ++RS  +I+ VV+            L       IR         G V+         
Sbjct: 486 LNENWRSFEEIVRVVEHTGRDDNPLQGVLPLGGVAPIR-------GPGGVRPTLVSCEDE 538

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                                         +A  +  +    T            ++ ++
Sbjct: 539 SIAFGE------------------------LASRVLGLQAEGTA----------FREQVI 564

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L  +                   I V+      +     +KDL+AL +  + +    + V
Sbjct: 565 LANRHDTC----DAAAAALVAAGIPVLHLG--DVFQRPEVKDLLALLQLFVDRS-GSALV 617

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH----I 494
            + + P       D+  +      T        +     +S      + +         +
Sbjct: 618 RIAQLPGLALPAPDVDVLLDHLRHTRPAPLSWLQAPPADLS--PAGAQALQRWRDTFGGL 675

Query: 495 AQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVIDVLDEFLNFT---------LRNEQNSY 544
               SP D    +L    +    + +    + +                      +    
Sbjct: 676 TSRDSPWDVICSLLFQRTRWLADYANGSDMQAVTRRLALWQIIYYLRVPDGGRVYQTVGT 735

Query: 545 SSLQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              +            ++         + V +MT+H +KGLE   V L+D  ++ F  + 
Sbjct: 736 FLTRLRRRLRLADDRDLRIPPPEAELLDAVAVMTIHQSKGLEFEAVHLMDVDARHF--ER 793

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                 +P +       +   +S++ N +   L +     T  E           A  +
Sbjct: 794 SDDAPWLPEVLTQSAGGVDEARSEAANRLYVALSRARSSLTLYEEKGYFKAARAPAVQR 852


>gi|296185028|ref|ZP_06853438.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
 gi|296049862|gb|EFG89286.1| UvrD/REP helicase [Clostridium carboxidivorans P7]
          Length = 350

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 22/139 (15%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YEE K++N ++DF+D+ +N   L  +      +     +   ++L+DE QD   +Q 
Sbjct: 226 FRVYEEYKEENQLMDFDDIQLNAQKLFLENP---QLLEAYKKLFKYLLVDEFQDCDGLQI 282

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+++ L               ++FAVGDE Q IY F G+ P  ++      +        
Sbjct: 283 ELLQML-----------GENSSIFAVGDEDQCIYGFRGSRPDCMVNFNEYFKN------- 324

Query: 254 KFSIIELPLSFRSTADILT 272
               I L  ++RS  +I+ 
Sbjct: 325 -GKKIFLQTNYRSNENIVD 342


>gi|317490785|ref|ZP_07949230.1| hypothetical protein HMPREF1023_02930 [Eggerthella sp. 1_3_56FAA]
 gi|316910113|gb|EFV31777.1| hypothetical protein HMPREF1023_02930 [Eggerthella sp. 1_3_56FAA]
          Length = 241

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 89/223 (39%), Gaps = 16/223 (7%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           D+K ++K  Q    ++                + LA+ + A +E AK+  C LD +DL++
Sbjct: 24  DVKAEVKAYQAVHARVAQNVALALAHPLASELMALAREVTARFEGAKRAACKLDNDDLLV 83

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            T D  ++      I  + ++    +++DE QDTS +Q ++I  L               
Sbjct: 84  RTLDAFER---CPDIAARYERRFKLVMVDEFQDTSQLQIDMIARLAGPRCAH-------- 132

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            L  VGD +QSIY F GA+       K+  +            +EL  +FRS  D+L+ V
Sbjct: 133 -LCTVGDAQQSIYRFRGADVNVYEAHKKAMRAD----EVGALYVELTKNFRSHGDVLSFV 187

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           D+VF                 +  S   G    + L   V   
Sbjct: 188 DRVFEQSTVFGEAFMSLEPNEQRPSCYRGSAPRIDLVLSVQPA 230


>gi|10957193|ref|NP_058217.1| putative DNA helicase [Salmonella typhi]
 gi|32765047|ref|NP_569320.2| putative DNA helicase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|260752049|ref|YP_003237564.1| putative DNA helicase [Escherichia coli O111:H- str. 11128]
 gi|7800246|gb|AAF69842.1|AF250878_3 putative DNA helicase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|145848991|emb|CAM91545.1| putative dna helicase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|257767519|dbj|BAI39013.1| putative DNA helicase [Escherichia coli O111:H- str. 11128]
 gi|313651501|gb|EFS15897.1| uvrD/REP helicase family protein [Shigella flexneri 2a str. 2457T]
          Length = 594

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 89/544 (16%), Positives = 153/544 (28%), Gaps = 132/544 (24%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ-EINHILIDEVQDTSLI 191
           L   Y+   +K+ V D         + L +  V      K+    + H+++DEVQDT  I
Sbjct: 153 LFNTYQAICQKDHVAD--------LNALSRFVVGQMYSGKMQPLNLTHLVVDEVQDTDSI 204

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH-GAEPKRVLREKRINQKRATN 250
           Q+  I   T           +      VGD+ Q+IYSF      K   + ++  +     
Sbjct: 205 QYAWISLHTR----------AGVNTSIVGDDDQAIYSFRASGGVKIFQQFEKQFR----- 249

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +I  L   FR   +IL V   +             S           G  G V  
Sbjct: 250 ----PNIFYLNTCFRCEPEILKVAGALIEKNVYRYAKDLRSA---------KGGGGKVHF 296

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              V      Q                               I N+I  D I        
Sbjct: 297 RSYVDMDEQIQG------------------------------ILNLINQDPIG------- 319

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R       +  L           V+        D     D++ L  F   
Sbjct: 320 -----WAILSRGNAHLDQLESLIEQ-------PVLRYGGKSFWDEKETSDVLHLMAFFRH 367

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI---CTQRHETETVYEYIQKFANCGISKFQHVIKY 487
             D      +L   LF  +E+ + +       R  T        + +    +   +  ++
Sbjct: 368 SNDVRLMKRVLA--LFGENEEVLDQTALSMKGRKVTFGELNIPNESSLETRTLHSNFTRF 425

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
             E     +           +     + +      +     LD    +    E+  + ++
Sbjct: 426 TQETREKVEIEKRFANLIKWMELSSIKMRTQKGSPSLSRIALDTCKQWA---EKTGWQNM 482

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               + +   P   K+      ++V + T+H +KGLE   V ++   +     K      
Sbjct: 483 INRAAAMCLGP--KKKDEEYTPDKVVLSTLHGSKGLEWKNVIIMSCNADQIPSKRSVG-- 538

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                            +   EE  RLL+VG TRA  QL +  +
Sbjct: 539 ---------------------------------QEAIEEERRLLFVGFTRAEQQLHVMWY 565

Query: 668 SNTS 671
            + S
Sbjct: 566 GDPS 569


>gi|298252946|ref|ZP_06976740.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis 5-1]
 gi|297533310|gb|EFH72194.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella
           vaginalis 5-1]
          Length = 1401

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 83/541 (15%), Positives = 167/541 (30%), Gaps = 75/541 (13%)

Query: 14  ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
           + +  D+  L       +    S     G          L+         E      +  
Sbjct: 167 DALIDDVLALAADISCSMIGINS----RGESIDSTSKAVLEIQKWNNAWIEHLQKAINCA 222

Query: 74  LTQK---FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            T +     P    + +  N       EK +    E+++  +     K ++S    L  A
Sbjct: 223 ETTEIIAKKPSSIKLRRGKNDSDEKYFEKCENYGKEYVEYLNITLKNKCYESCNNLLEAA 282

Query: 131 K------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
           +       L   ++ AK++  +  F D  I    L+        I  +  ++ + +L+DE
Sbjct: 283 EKRNVLLELVLAFDAAKQRANMAQFSDFTIAAYRLVTHFPS---IAEQYRRQYSQVLLDE 339

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHS--------------SPRTLFAVGDEKQSIYSFH 230
            QDTS  Q  +I +L      G    S                  + AVGD  Q+IYSF 
Sbjct: 340 YQDTSTTQAMLIATLFHKKTNGVEEASVAAKTSENQDFLTTQQTHIAAVGDPFQAIYSFR 399

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA      + ++      ++         L  + R++  IL   + +             
Sbjct: 400 GASSGAFRKLEQALNIDQSS------EFSLTRTRRNSQLILKAANSI------------- 440

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
            T  +R  + R       ++  + +   D+                 Q      + R + 
Sbjct: 441 -TKPLRVPALRHSSSLATEVEVKNLQYLDNAPKGTFSVLNMP----TQYQEVEAVVRFVK 495

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
           Y   N +  +   ++   R      + VL R + + PL     +       +  +     
Sbjct: 496 YVKHNALSENDDTNSASAR------VAVLFRSKNNIPLYEEALQ----KAGLRTLTVGYS 545

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET------E 464
            L +   I+D++AL   +    +  + + +L +P F  + DD+  I              
Sbjct: 546 ALLEKPEIRDVLALLSVVADHTNTQALMRLLATPRFALNTDDLAAIANIATSKNIEYVFR 605

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            + +     A    SK+  V++                F   +L      + + ++   E
Sbjct: 606 ALVQAGLVNAETPRSKWSQVVREQQSQASQTNSIHGGVFVADVL-----LEAYETQLSEE 660

Query: 525 V 525
            
Sbjct: 661 A 661



 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 64/205 (31%), Gaps = 33/205 (16%)

Query: 770  LESLLSDNQTFNRGLIIHKLLQVIF------------TLPEHKRKNFITSYCT--KNAKL 815
                   +   + G   H   +                + E+  +N + +     +N   
Sbjct: 1190 RPIPSVSSPASDLGTRFHAWAEQFVKAGCVNKNSIQYDVDENVDENAVENVAETCENISQ 1249

Query: 816  WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS--- 872
                  + LL+   RL+ +     A      +E  +   +     D II+G+ID I    
Sbjct: 1250 NAKSSERKLLIWKQRLITS---KWAHRRPIAAEQPIVAHVP-ELGDQIINGKIDAIFAGG 1305

Query: 873  ---ISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIY 926
                       I ++KT    P + + I    + QL  Y  +L      P  ++   L Y
Sbjct: 1306 LNPEDPSKLYTIVDWKTGR-KPTKPQDIALK-LGQLDWYRLLLSLMTKVPLDAIDATLYY 1363

Query: 927  V----SEPKVFIIPQNKLNKAFAEI 947
            V       +     Q   ++  AE+
Sbjct: 1364 VNISDECEREIHAEQKTKDEILAEL 1388



 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVV 588
           D +L         +  +L   +S +        +  S +    V +MT+H +KGLE P V
Sbjct: 754 DAYLQEMSDF---TTPTLHGFMSWIFNIDKINDQPSSVDETADVVLMTIHQSKGLEWPAV 810

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +V      F       + ++ +    
Sbjct: 811 AIVGLNEGAFPSNQGDNLRVIATQQSG 837


>gi|301347282|ref|ZP_07228023.1| UvrD/REP helicase [Acinetobacter baumannii AB056]
          Length = 413

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/537 (14%), Positives = 157/537 (29%), Gaps = 136/537 (25%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YE   +K  ++DF+D+ +    ++K+     WIR+ ++     + +DE QD   +  E++
Sbjct: 1   YESELRKKGLIDFDDMPLIAFKMIKEN---LWIRHALECRFPILFVDEYQDLGHVLHELV 57

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L  D             LFAVGD  QSIY F GA P+ +                   
Sbjct: 58  HLLCFD---------GKIRLFAVGDADQSIYGFTGANPELLQSLTER---------DDVE 99

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I+L  ++RS   I+                                   ++   ++  +
Sbjct: 100 TIQLRYNYRSGTRIVKA---------------------------------SLAALDEERN 126

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
               +  P+ E   +      +E      A  I   +   + +         + ++ + I
Sbjct: 127 YETPEGTPEGEIIFNPVKGTLEEQ-----ANFIVDKLLGELAS---------KGLKNEQI 172

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L +       I       K    I     D   L           L  FI      ++
Sbjct: 173 AILYKAAWLGNKIVEALEAKK----IPYHRTDSNSLIKRS-----SKLACFIEDCAKWIT 223

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
                  P FN        I    + T+   + +       + K + V +  +  +    
Sbjct: 224 GGWKRAEPPFNKLSKQALNIVYGNNYTQAEKQILDLQLINFLQKSRFVSETANAWL---- 279

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                          +  ++ ++ + +   + + E+    L   + +   + +       
Sbjct: 280 --------------IRFEKELMAHWSSICRNNIQEW-EVCLDLIKKTSPQMNK------D 318

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               +    +     + + T H++KG E   V +      +   K   K           
Sbjct: 319 MSLELFSGKTEGTGRLILTTFHSSKGREFDAVIIFGANKGILPDKRDLKTF--------- 369

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                     + +E  RL YV +TR    L +   S   +E
Sbjct: 370 -------------------------KSLKEVKRLFYVAVTRPKTILHLVYESKKHSE 401


>gi|300692578|ref|YP_003753573.1| ATP-dependent DNA helicase Rep [Ralstonia solanacearum PSI07]
 gi|299079638|emb|CBJ52316.2| putative ATP-dependent DNA helicase Rep [Ralstonia solanacearum
           PSI07]
          Length = 545

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/604 (13%), Positives = 160/604 (26%), Gaps = 137/604 (22%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L   F       ++  +T+ +     +     +         R         +       
Sbjct: 65  LPEDFGVATRADRQAALTEALAHTVDE-PGNFQDWDFRLGNYRRSILNRDSSEWRETDPE 123

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           LA  L   YE   ++  ++DF+D+ +     L+      W++  +  +   +++DE QD 
Sbjct: 124 LAG-LVEAYETGLRQRGLIDFDDMPLLAVRALRANP---WLQRALLAKYQVLVVDEYQDL 179

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
            +    ++  L           S+   LFAVGD  QSIY F+GA P  + R         
Sbjct: 180 GVALHRMVMGLC---------FSTGMRLFAVGDVDQSIYGFNGARPDLLRRLSER----- 225

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
               +    + L L++RS   I+T                        + ++     G V
Sbjct: 226 ----EDVETVRLRLNYRSGNRIVTAS-------------RVALGEERDYEAADATAQGMV 268

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
            +     +                                     + +IG     +  + 
Sbjct: 269 FIHPMGGTYEQQA--------------------------------ARLIGELLPQAIARN 296

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             +  +D+ VL         +            I  V  D   L           L +++
Sbjct: 297 PGLGYRDVAVLYP----AAWLGDAVASAAQAAGIPYVRTDVNALYSRS-----SRLLQWL 347

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                       +  P F     +  ++      ++       +     +   +     +
Sbjct: 348 EMCSQWCCGGWRMGRPRFTRIVKEGRRLFAAALHSDERITDFHRRLVAALWDSRDASLNL 407

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
           H  +   +      F    +      +   S             +     +   +   L 
Sbjct: 408 HRWLEGLRVQVIEPFAAECITLHDEMEMLASFSVR---------IAQGGDHADMALGELA 458

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                L               + + + T+H+AKG E  VVF+    S       +     
Sbjct: 459 GDGEFL---------------DRLTLSTLHSAKGREFGVVFMFAMDSGRLPRNGVG---- 499

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                           +    E  RL YVG TRA  ++ +   +
Sbjct: 500 --------------------------------RGQIAEARRLFYVGFTRAKAEVHLIHTA 527

Query: 669 NTSN 672
             S+
Sbjct: 528 RRSS 531


>gi|254462466|ref|ZP_05075882.1| helicase IV [Rhodobacterales bacterium HTCC2083]
 gi|206679055|gb|EDZ43542.1| helicase IV [Rhodobacteraceae bacterium HTCC2083]
          Length = 953

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 100/287 (34%), Gaps = 26/287 (9%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
            P+    +  + ++   E          +T     +   + E  +   + F T     ++
Sbjct: 425 APFVDRDEYLEGMTWKREVHGEHDTTLIETFSYEREDGRLLEALAEKIAPFETPSPRSRE 484

Query: 83  NIITQEIN-KKSPDLKEKLKKSQD-------EFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
            +    +  K++    + +            +  +  D+    K+ K   A L++ + L 
Sbjct: 485 TLFNVVVEMKQADPFVQLIGTFLRHYKGGGYQLAECEDKAGKLKLGKRATAFLSIFEPLY 544

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           A Y++       +DFED+I+  ++ ++K                HIL+DE QD S  +  
Sbjct: 545 AEYQKRLD--GRIDFEDMILRASNYVEK--------GTYRSPFKHILVDEFQDISRSRGR 594

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++++L                +FAVGD+ QSIY F G++   +                 
Sbjct: 595 LVKALK--------AQHDDARVFAVGDDWQSIYRFAGSDINLMRDFGHEFGGAFDGHSDV 646

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
             +++L  +FRS   I     K           +     T    + +
Sbjct: 647 HRVVDLGRTFRSVDKIAHAAKKFVLQNPAQLDKTVIPAGTTDDPALK 693



 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 71/261 (27%), Gaps = 33/261 (12%)

Query: 423 ALGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            L + + +Q DD     +    +S       D                 +        + 
Sbjct: 594 RLVKALKAQHDDARVFAVGDDWQSIYRFAGSDINLMRDFGHEFGGAFDGHSDVHRVVDLG 653

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLIL---GAKKGRQQFISRFGNEVIDVLDEFLNFT 536
           +    +  I          +P      ++          + +S + ++  + L + L   
Sbjct: 654 RTFRSVDKIAHAAKKFVLQNPAQLDKTVIPAGTTDDPALKVVSTYRHDADEKLKQVLRPL 713

Query: 537 LRNEQNSYSS----LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                +        L      L        R    N N +   T+H++KGLE+  V L+ 
Sbjct: 714 HEGAASEGKPTSVLLLGRYRYLAPSNLAQLRREFPNLN-ISFRTIHSSKGLEADHVILLS 772

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                                         P     + ++  +    +     E  R++Y
Sbjct: 773 LYRGR----------------------TGFPSEIVDDPLLGLVSPDAEPFENAEERRVMY 810

Query: 653 VGMTRASDQLIICKHSNTSNE 673
           V +TRA   + +   ++  + 
Sbjct: 811 VALTRARHTVTLMGSASKQSA 831


>gi|290243129|ref|YP_003494799.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
 gi|288945634|gb|ADC73332.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix]
          Length = 611

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/677 (11%), Positives = 179/677 (26%), Gaps = 146/677 (21%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL-----SSFFLTQKFTP 80
                +++     +     T     +  Q+ S                  S  L+Q    
Sbjct: 41  RARRLLDQDPKHRVAAVTFTQASAIEMTQRMSAEGLPPRELQRFQAGTFHSLALSQATQA 100

Query: 81  QKNIITQEINKK----------SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL- 129
           +K   +Q +                +++ +     ++ +I  +    ++ +      TL 
Sbjct: 101 RKAKASQILATGEWISILRNAIDQAVRDGMDPELADYEEISLQVQERQVQEKEPGEATLE 160

Query: 130 ---AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                Y+   + + K K+  LDF D++    + +    +             H+L+DE Q
Sbjct: 161 KAPYDYIYNLFRQYKAKSKKLDFADILRFAVNGMADGSIPPL-------PCTHMLVDEAQ 213

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE-PKRVLREKRINQ 245
           D   +Q+  I++ +     G         +  VGD+ QSIY +  A+    ++R      
Sbjct: 214 DMDPLQYAWIKAHSRPGASG------GAYITLVGDDDQSIYGWRYAQGYGGMMRFMTD-- 265

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       + LP+++R   +ILT  +++     N                 R  Q 
Sbjct: 266 -------HSAGHVILPVNYRCAPEILTPSERLIRHNANRVEK-----------PIRAAQP 307

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               +  + V   +++ +  +  W    +                               
Sbjct: 308 PGGTITFERVGDPEAEADAIENRWHQLGEDET---------------------------- 339

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                     I  + R  +              +  +           D   +  +    
Sbjct: 340 ----------IAYIGRSNRAL----DALEGELMERDVPYYRAGGGNFLDDPDVAAVHRAL 385

Query: 426 RFILS----QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
             +      + D L  +  +              I     +   + + +         + 
Sbjct: 386 TVVNQIAEGRGDPLPHLRQILIWAGFPYRVANDAIQGGGSDVLAIVDALPDIQWDPGHEM 445

Query: 482 QH-----VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
           Q      + + +   +  A   +       +     G     ++   ++  +        
Sbjct: 446 QRQFAIKLSRNMPAWVKQAGIGNADRIVAFVARIFSGFAHDKNQGPKQMGRLARAIRTMM 505

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            +        + + +  LE+      +        + ++T H +KG E   V++      
Sbjct: 506 KKESPKQDMKIGKCLRNLERN----LKKRPEEQARITLLTAHASKGQEFDHVWVTRAEQG 561

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F                                         K +  +E  RL+YV MT
Sbjct: 562 QFP--------------------------------------TEKATDFDEERRLMYVAMT 583

Query: 657 RASDQLIICKHSNTSNE 673
           RA   L +   +  +  
Sbjct: 584 RAKKTLTLTSRTGKTPS 600


>gi|317481614|ref|ZP_07940650.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689582|ref|YP_004209316.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F]
 gi|322691543|ref|YP_004221113.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|316916974|gb|EFV38360.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456399|dbj|BAJ67021.1| putative DNA helicase [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320460918|dbj|BAJ71538.1| putative DNA helicase [Bifidobacterium longum subsp. infantis 157F]
          Length = 524

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 107/325 (32%), Gaps = 58/325 (17%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLA--KYLNAHY 137
           +    T        D+  ++  ++   + + D         +   A L  A    + + Y
Sbjct: 138 RATARTDADPLTVRDVLAEINWAKISLVAVEDYARACAIAHRQPPAGLDTARFADVYSAY 197

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           E+ K     +DF+D+++    ++     +A    +I   I  + +DE QD S +Q  ++ 
Sbjct: 198 EQEKTSRGEIDFDDILLLVCHIMDGFPEAA---AQIRSTIGWLTVDEYQDVSPLQHRLLT 254

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        +  R +  VGD  Q+IYSF GA    +LR            G   + 
Sbjct: 255 L-WLGGGGPDGKSAMNRNVCVVGDPAQTIYSFAGASSWDLLRFADEF-------GPLAAD 306

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           + L   +RST +++ + ++V +   N           ++  S+R                
Sbjct: 307 VNLNTDYRSTPEVVNLANRVLAAAPNR-------EDYLKLVSARESGPRVT--------- 350

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                                  S    A+ +A  I+ ++              +  D  
Sbjct: 351 ------------------RTAYESDMEEAQGVAARIARLVANG----------AKPSDCA 382

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKI 402
           +L R     P+     R  +  Y++
Sbjct: 383 ILTRINAQQPVFGAALRAARLKYRV 407



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 36/128 (28%), Gaps = 35/128 (27%)

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                  + LE          + +   V I T+H +KGLE   VFL+     +  +    
Sbjct: 420 DDAASKRALLEAMGLDATGLAANDDLGVTISTIHASKGLEFKHVFLIGCSEGLLPYGSP- 478

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL+YVG+TRA D L +
Sbjct: 479 ----------------------------------ETGDALEEERRLMYVGITRAEDSLHL 504

Query: 665 CKHSNTSN 672
                   
Sbjct: 505 SYARTKDG 512


>gi|28572401|ref|NP_789181.1| ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27]
 gi|28410532|emb|CAD66918.1| putative ATP-dependent DNA helicase subunit [Tropheryma whipplei
           TW08/27]
          Length = 993

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 111/868 (12%), Positives = 236/868 (27%), Gaps = 168/868 (19%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 L   Y  A+  N      ++I     L     +              I++DE Q
Sbjct: 169 WKTYAALIEKYRLARTSNNAFTAVEIIERAAQLASTGYLP----------YRVIMVDEAQ 218

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           + +     +  +L               T+   GD  +++     A P   L        
Sbjct: 219 ELAAEHMRLFSALAR----------RNITVILFGDPDKAV--ARSASPSIFLDFSE---- 262

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +  L   FR+  ++      + S           S    R   +     G
Sbjct: 263 ---------KLFVLKTVFRTPRNL-----HLLSQKICQGIGVTGSVLAHRQSFNSSILEG 308

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V+                         ++   S A+ +A      I+       +    
Sbjct: 309 RVE-------------------------TVISSSRATSMAD-----IARWFREKHLLE-- 336

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKDLMALG 425
               I  +D+ +++ +R    + +         + + V        L++      ++   
Sbjct: 337 ---GIDWEDMALIIFQRSSAEVYSHFLE----RFGVPVQILGGGLNLSEKPIAGAILNAI 389

Query: 426 RFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICTQRHE---------TETVYEYIQKF- 473
                 +     + V +L SP+  F    + K+  +             E +      + 
Sbjct: 390 ELACFPDILTGKTLVKLLLSPIGGFDVFLMRKLTIELKRIAPKNIQVLNERLLWAFHAYR 449

Query: 474 ---------------ANCGISKFQHVIKYIHELIHIAQFCSPH--DFFTLILGAKKGRQQ 516
                          A+      + + + +  L  + +  +         +      +  
Sbjct: 450 KLQTQDTDEVYRVFLASRIGRSLKKIFECLISLERLYREDNVSLPVLIWHVYSFLNLKSA 509

Query: 517 FISRFGN---------EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                           E +  L +  +   + +    + L  L   +    P    +   
Sbjct: 510 VSKEPWQTSKVSHRVLEEVIALQKLADAVSKKDPLCSAGLI-LQKIINAEVPVDNLSIRE 568

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               V I+T  ++ G E   V + D               +  +  +             
Sbjct: 569 KRGCVTILTPASSVGYEYRAVVITDIQGSHKMDSTQLDPELALADIN------------- 615

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
            N   S  ++      +    R LY  +TR++  L++       + + S    +Y    D
Sbjct: 616 -NIPFSRYLESKLAGRRHNLLRTLYQAVTRSTSDLLVSVI---DSAETSPSWLFYAFFSD 671

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
               +     + L   + +          +    + L           + +      S  
Sbjct: 672 YPSCELSSLPLTLRGIVTQLRLDLERDPGNTEAASALRLLAKEGISQADPQNWYGYLSRT 731

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQ-------TFNRGLIIHKLLQVI------F 794
           +N       + PS +D      L                   G IIH+ +Q +       
Sbjct: 732 ENKSYVMDSIKPSALDKFHTCPLGWFTDQLDCNRYPGNATEIGTIIHRCMQELTCDNRQP 791

Query: 795 TLPE-HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE-----NPMMTTAMSCDSYSE 848
            L E               ++    +E K L+  I +L++     +    T ++    SE
Sbjct: 792 NLNEFLDYAYAKLREADFESRWVLEREKKRLVGIIRKLVDYLIDFDAHGGTLLA----SE 847

Query: 849 VSVSGKINC-PKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            S S  +N    + I+ISG+ID++   S   I I + KT   +  + +        QLS 
Sbjct: 848 KSFSFDLNVFKDRSIMISGQIDRLERLSSGEIRIVDLKTGSSLLSKNDAESN---LQLSA 904

Query: 907 YEKILKDS---YPNKSLVCLLIYVSEPK 931
           Y+  ++     Y       +LIY +   
Sbjct: 905 YQLAVEHLDIVYETLP-SAMLIYPAVGT 931


>gi|215410176|ref|ZP_03418984.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           94_M4241A]
 gi|298524120|ref|ZP_07011529.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           94_M4241A]
 gi|298493914|gb|EFI29208.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           94_M4241A]
          Length = 543

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/453 (14%), Positives = 130/453 (28%), Gaps = 42/453 (9%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
              E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 83  PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 142

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
            L             +       ++  D +    ++    + + D    +         +
Sbjct: 143 ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 202

Query: 124 LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 203 KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 260

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 261 VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 308

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                    AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 309 --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           +            +            +     ++L +     + A               
Sbjct: 361 LASAPRP--APFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 410

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 411 SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 466

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
           + L     + +          +  F  + + + 
Sbjct: 467 LCLLEAFDAPQRSGLVRAAACTMFFGETAESLA 499


>gi|159039648|ref|YP_001538901.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
 gi|157918483|gb|ABV99910.1| UvrD/REP helicase [Salinispora arenicola CNS-205]
          Length = 719

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/427 (13%), Positives = 127/427 (29%), Gaps = 77/427 (18%)

Query: 2   KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
           ++   ++         +               + + ++      +   A  L        
Sbjct: 59  RHLLAVTFTARAAAELRSRLTALGVPGVQARTFHAAALR----QVRYFAPRLLAGRAMPE 114

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
           + +    L +    +         T+++  +    K  L +  +  +         K  +
Sbjct: 115 LLDSKVRLVTLAAAKVGIRADRTGTRDLAGEIEWAKSSLVEPGEYVVA------AAKALR 168

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            T         + A YE+ K+   V+DFED++      +++      +  ++  +  H +
Sbjct: 169 ETPYEPARVADVFAAYEQVKRSGGVIDFEDMLRAAIWGIEEHPD---VADQVRAQYRHFV 225

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD + +Q  ++ +                 L  VGD  Q+IYSF GA    ++   
Sbjct: 226 VDEYQDVNPLQQRLLEAWLG----------GGDDLTVVGDASQTIYSFTGATSSYLVDFP 275

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R          +  +++ L   +RST  ++ + + V S                      
Sbjct: 276 RR--------HRSATVVRLVRDYRSTPQVVGLANAVIS---------------------- 305

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             +    +L  ++V Q      P    +T         ++              +I   T
Sbjct: 306 PARGSEARLRLELVGQRPPGPEPDLRIFTDEPAEAAAVAARCRA----------LIDAGT 355

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                      A++I VL R    + +        +    +           + + I+  
Sbjct: 356 P----------AREIAVLFRTNAQSEVYEKALTEAE----VPYQVQGAERFFERVEIRQA 401

Query: 422 MALGRFI 428
           M   R  
Sbjct: 402 MVALRAA 408



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 43/141 (30%), Gaps = 38/141 (26%)

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              ++L +   EL +               V + ++H+AKGLE   VFLV          
Sbjct: 475 ERPATLADFTDELARRAAAQHAPTVEG---VTLASLHSAKGLEWDAVFLVGLAEGTLP-- 529

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                             +        EE  RLLYVG+TRA + 
Sbjct: 530 ---------------------------------TLYAKTPEQVEEERRLLYVGITRAREW 556

Query: 662 LIICKHSNTSNEKKSNQRTWY 682
           L +   S  S   +  +   +
Sbjct: 557 LWLSYASARSPGGRPRRPCRF 577


>gi|297202230|ref|ZP_06919627.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148066|gb|EDY54287.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 469

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/382 (15%), Positives = 116/382 (30%), Gaps = 67/382 (17%)

Query: 38  SMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
            +          A+ L++A          F+ L S  LT      ++++  E  +     
Sbjct: 153 RLLADATRYQLAARVLREAPGPYPALTRSFADLVSDLLTLDAELAEHLVRPEQVRAHDA- 211

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                +        +   +  +    T A+      L   Y  AK++  +LDF D I  +
Sbjct: 212 -----ELLLTLQGAKLTNDALRKVPETAAARRELAELVVRYRAAKRERDLLDFGDQIALS 266

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L    +V   +R +       +L+DE QDTS+ Q  ++  L  +         +   +
Sbjct: 267 ARLAGIPEVGRVLRDE----FRVVLLDEYQDTSVAQRVLLAGLFGE--------GTGHPV 314

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            AVGD  Q+IY + GA    +    +     A   G+  +   L  + RS   +L + + 
Sbjct: 315 TAVGDPCQAIYGWRGASVANLDDFPQHF---AHPDGRPATRQSLSENRRSGGRLLDLAND 371

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +    E  + +            +    +    L      + D                 
Sbjct: 372 L---AEPLRAMHAGVEALRPAPGAERDGMVRCALLPTHAEEID----------------- 411

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                       +A +I++++ T               +I VL R   D   I       
Sbjct: 412 -----------WLADSIAHLVRTGKA----------PGEIAVLCRTATDFAEIQGALVE- 449

Query: 397 KNDYKISVVGNDRFILTDHLAI 418
                + V       L     +
Sbjct: 450 ---RDVPVEVVGLSGLLHLPEV 468


>gi|225077447|ref|ZP_03720646.1| hypothetical protein NEIFLAOT_02509 [Neisseria flavescens
           NRL30031/H210]
 gi|224951196|gb|EEG32405.1| hypothetical protein NEIFLAOT_02509 [Neisseria flavescens
           NRL30031/H210]
          Length = 342

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 88/262 (33%), Gaps = 48/262 (18%)

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           ++A  R  ++ +DD + + ++  P        +  + T   E           A    +K
Sbjct: 1   MLAYLRLAVNPDDDNALLRVINFPPRGIGARTVENLQTASQEQGVSLWQAACNAGAKAAK 60

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLR 538
               ++ I  L +        +    IL      + + ++ G   + +D LDE +N  + 
Sbjct: 61  VAAFVRLIEALRNQVGQMPLPEIIAGILKDSGLTEYYQTQKGDNQDRLDNLDELVNAAIE 120

Query: 539 N--EQNSYSSLQE---------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESP 586
              E +++  L +         +++ L        +    A    +++MTVH AKGLE  
Sbjct: 121 FKPEDSNFEILSDNISDDPAFPILAFLSNAALESGENQAGAGEKAIQLMTVHAAKGLEFN 180

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VFL       F  +                                      ++   EE
Sbjct: 181 AVFLTGMEEGRFPSEMSL----------------------------------AERGGLEE 206

Query: 647 YNRLLYVGMTRASDQLIICKHS 668
             RL+YV +TRA  +L I    
Sbjct: 207 ERRLMYVAITRARKRLYITMAQ 228


>gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 869

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 125/371 (33%), Gaps = 72/371 (19%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            +     L   Y +  ++N  LDF DLI+  + LL++ +    IR +      ++ IDE+
Sbjct: 193 LVQHGLALYRQYNQCLRQNHALDFHDLILQAHRLLQQPE----IRTRWQTRFRYLTIDEI 248

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDTS  ++  +  L  +           + L   GD  Q+IY + G+ P  +       +
Sbjct: 249 QDTSDWEYAFLSPLFPE-----------KNLLFCGDAFQTIYEWRGSHPDFIF---ADIK 294

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           K+          + L  ++R+   ++                          ++    + 
Sbjct: 295 KKYHPL-----CLTLTTNYRAAPPLVQAA-------------------ADCLQALFPDRQ 330

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                  ++++       P+     S+   L + +        I  TI  M   +     
Sbjct: 331 S-----PKILAGTPVDATPEPIQKHSFPTYLEEGA-------WIFKTIQAMSKDER---- 374

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND----YKISVVGNDRFILTDHLAIKDL 421
                   + + ++ R  +    +    R           +     ++F L     IKD+
Sbjct: 375 --------RHVCIMTRTNRQNKQLWLALRACNARVRADRTLPFSRIEQFHLFKRQEIKDV 426

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGIS 479
           +A  R I+++ D LS   + +  + +     + ++     +     + ++          
Sbjct: 427 LAFLRLIINKNDALSMHRIAQRFIPHLGHAVLRQLEGPAYKTAGIHLSDFSDPRILTAGD 486

Query: 480 KFQHVIKYIHE 490
            F  ++ ++ E
Sbjct: 487 PFGLLLHHLQE 497



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 68/224 (30%), Gaps = 45/224 (20%)

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---- 526
           ++       +F    + I  L   +    PH+  T I+     ++ +      E      
Sbjct: 674 RELFTTYAHRFISFSEKISALRRQSYSLRPHELLTRIMLHCGVKEYYAKIDEQEASRGEP 733

Query: 527 ----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTA 580
               D +  F       +  S S    L   L+    +     +      ++ I+TVH A
Sbjct: 734 SHRLDHIRYFYRLAAEQDDPSRSPRDNLQELLQLASLSNSELDTLLQKRAQIPIITVHQA 793

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE   VFL       F                                        ++
Sbjct: 794 KGLEYDTVFLAALQDGTFPLSRP-----------------------------------IQ 818

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
               +E  RL YV +TRA  +L +  H   ++ K++  R    +
Sbjct: 819 TGNLDEEKRLFYVAITRAKKKLYLTWHEAENHIKQNPSRFLQTL 862


>gi|15827263|ref|NP_301526.1| putative ATP-dependent DNA helicase [Mycobacterium leprae TN]
 gi|221229741|ref|YP_002503157.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
 gi|13092812|emb|CAC30146.1| putative ATP-dependent DNA helicase [Mycobacterium leprae]
 gi|219932848|emb|CAR70731.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923]
          Length = 717

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 90/699 (12%), Positives = 175/699 (25%), Gaps = 170/699 (24%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL----KKAQTLQQASQTQCIEERFSL 68
                +        ++  +   V    + G   +L       + L+        +  + L
Sbjct: 64  AVTFTQRAAAEMRSRLRALGAAVQAVSDFGVVRVLTFHAAAHRQLRYFWPRVIGDTGWQL 123

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L S F T         +    +    DL  +++ ++   I   +                
Sbjct: 124 LDSKFATVARAASSVRLHAGTDDVC-DLAGEIEWAKASLIGPEEYVAAVAAIGRDTPLDA 182

Query: 129 L-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-----WIRYKIDQEINHILI 182
                + A YE  K +   +    + +   D L     +A      +  +        ++
Sbjct: 183 AQIASVYAAYEALKARGNGV--PGVTLLDFDDLLLHTAAAIENDAAVAEEFRDRYRCFVV 240

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD + +Q  V+ +   D             L  VGD  Q+IYSF GA P  +L   R
Sbjct: 241 DEYQDVTPLQQRVLSAWLGD----------RDDLTVVGDANQTIYSFTGASPCFLLDFPR 290

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                        +++ L   +RST  ++++ ++V +                       
Sbjct: 291 RFP--------DATVVRLERDYRSTPQVVSLANQVIAAAHGR------------------ 324

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  + +        +      S+  Y D   + ++ +            +I   T 
Sbjct: 325 -------VADSKFQLSGQREPGPAASFHEYSDEPAEAAAVAASIA-------RLIEFGT- 369

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                       +I VL R    +         +     I+          +   IK  +
Sbjct: 370 ---------SPSEIAVLYRVNAQSEAYEEALTEV----GIAYQVRGGEGFFNRQEIKQAL 416

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
              +    +         L   +                    +            S+ +
Sbjct: 417 LALQRSAERSSQTEPNSPLSDVVRGV-----------------LEPLGLTAEKPVGSRAR 459

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
              + +  L  +A                                             Q+
Sbjct: 460 DRWEALTALAELADD----------------------------------------EVAQH 479

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L  L++EL                 V + ++H  KGLE   VFLV           
Sbjct: 480 PRLDLPGLLAELRLRADARHPPVVQG---VTLASLHAVKGLEWDAVFLVGLADGTLP--- 533

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                       I   L    +    EE  RLLYVG+TRA   L
Sbjct: 534 ----------------------------ISRALAHGAESEPVEEERRLLYVGITRARVYL 565

Query: 663 IICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +           +      + + +      +    + +
Sbjct: 566 ALSWALSRTPGGRQSRKPSRFLNDIAPQMGQNPASSRSR 604


>gi|21226130|ref|NP_632052.1| superfamily I DNA/RNA helicase [Methanosarcina mazei Go1]
 gi|20904353|gb|AAM29724.1| Superfamily I DNA and RNA helicase [Methanosarcina mazei Go1]
          Length = 865

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 22/190 (11%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            R  + +      +   +   +   YE   +    +DF D+I      LK+       + 
Sbjct: 526 QRLRSERWSAKQESFARIVLDIYELYENELRTENRIDFADMINLAVKELKEN------QE 579

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
                   ILIDE QD S  ++E+IR L +         +    LF VGD+ QSI  F G
Sbjct: 580 LYRNSFAQILIDEYQDISSQRYELIRELMK--------KNDGCKLFCVGDDWQSIMGFSG 631

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           ++    +                 +  +L  ++RS   I+    ++     ++Q   +  
Sbjct: 632 SDLDFFVNFHEYFDH--------PARTDLSTNYRSCKSIVDTGAEIIKYNRDSQIEKDTF 683

Query: 292 TTTIRHRSSR 301
                    R
Sbjct: 684 AKNTTENPIR 693



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 133/453 (29%), Gaps = 59/453 (13%)

Query: 227 YSFHGAEPK--RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           Y F G + +   + R  +  + +  +   +F+ +           +++ V+         
Sbjct: 450 YEFKGEKFEEILIERMTKALKIKYPDKDFEFTPVPYDQ-------LISRVNYGCKESLRG 502

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
              +     TI    +   +    +L  +  S                +++  +  +   
Sbjct: 503 LSFNVSKFITIAKTYNLPPENINQRLRSERWSAKQESFARIVLDIYELYENELRTENRID 562

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVI--QAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            A  I   +  +     ++ N   +++  + +DI         +     L R L      
Sbjct: 563 FADMINLAVKELKENQELYRNSFAQILIDEYQDI---------SSQRYELIRELMKKN-- 611

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                D   L       D  ++  F  S  D                    ++ C    +
Sbjct: 612 -----DGCKLF--CVGDDWQSIMGFSGSDLDFFVNFHEYFDHPARTDLSTNYRSCKSIVD 664

Query: 463 TETVYEYIQKFANCGISKFQH--VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
           T        + +      F        I   +      S + +++ I        +    
Sbjct: 665 TGAEIIKYNRDSQIEKDTFAKNTTENPIRIYVSKHNRRSTNMYYSQIASHCVYSIKHYLD 724

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
            G E  D+L   L+        +      L+   +     I    S N N++  MTVH +
Sbjct: 725 DGYEPKDIL--LLSRI----GKNLKMKNTLMEYAKTLDVPISFDGSKNPNKIPFMTVHKS 778

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGL++  VFL+D                              P      +I    I   K
Sbjct: 779 KGLQAKAVFLLDVVED----------------------LYGFPCEIENPDIFEPAILSRK 816

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           +   EE  RL YV +TRA + LII    ++ ++
Sbjct: 817 RDRYEEERRLFYVAVTRAMNDLIIYTRKDSVSK 849


>gi|239620805|ref|ZP_04663836.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239516381|gb|EEQ56248.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 524

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 107/325 (32%), Gaps = 58/325 (17%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLA--KYLNAHY 137
           +    T        D+  ++  ++   + + D         +   A L  A    + + Y
Sbjct: 138 RATARTDADPLTVRDVLAEINWAKISLVAVEDYARACAIAHRQPPAGLDTARFADVYSAY 197

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           E+ K     +DF+D+++    ++     +A    +I   I  + +DE QD S +Q  ++ 
Sbjct: 198 EQEKTSRGEIDFDDILLLVCHIMDGFPEAA---AQIRSTIGWLTVDEYQDVSPLQHRLLT 254

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        +  R +  VGD  Q+IYSF GA    +LR            G   + 
Sbjct: 255 L-WLGGGGPDGKSAMNRNVCVVGDPAQTIYSFAGASSWDLLRFADEF-------GPLAAD 306

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           + L   +RST +++ + ++V +   N           ++  S+R                
Sbjct: 307 VNLNTDYRSTPEVVNLANRVLAAAPNR-------EDYLKLVSARESGPRVT--------- 350

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                                  S    A+ +A  I+ ++              +  D  
Sbjct: 351 ------------------RTAYESDMEEAQGVAVRIARLVANG----------AKPSDCA 382

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKI 402
           +L R     P+     R  +  Y++
Sbjct: 383 ILTRINAQQPVFGAALRAARLKYRV 407



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 36/128 (28%), Gaps = 35/128 (27%)

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                  + LE          + +   V I T+H +KGLE   VFL+     +  +    
Sbjct: 420 DDAASKRALLEAMGLDATGLAANDDLGVTISTIHASKGLEFKHVFLIGCSEGLLPYGSP- 478

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL+YVG+TRA D L +
Sbjct: 479 ----------------------------------ETGDALEEERRLMYVGITRAEDSLHL 504

Query: 665 CKHSNTSN 672
                   
Sbjct: 505 SYARTKDG 512


>gi|227546827|ref|ZP_03976876.1| DNA helicase II [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227212789|gb|EEI80670.1| DNA helicase II [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 524

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 107/325 (32%), Gaps = 58/325 (17%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLA--KYLNAHY 137
           +    T        D+  ++  ++   + + D         +   A L  A    + + Y
Sbjct: 138 RATARTDADPLTVRDVLAEINWAKISLVAVEDYARACAIAHRQPPAGLDTARFADVYSAY 197

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           E+ K     +DF+D+++    ++     +A    +I   I  + +DE QD S +Q  ++ 
Sbjct: 198 EQEKTSRGEIDFDDILLLVCHIMDGFPEAA---AQIRSTIGWLTVDEYQDVSPLQHRLLT 254

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        +  R +  VGD  Q+IYSF GA    +LR            G   + 
Sbjct: 255 L-WLGGGGPDGKSAMNRNVCVVGDPAQTIYSFAGASSWDLLRFADEF-------GPLAAD 306

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           + L   +RST +++ + ++V +   N           ++  S+R                
Sbjct: 307 VNLNTDYRSTPEVVNLANRVLAAAPNR-------EDYLKLVSARESGPRVT--------- 350

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                                  S    A+ +A  I+ ++              +  D  
Sbjct: 351 ------------------RTAYESDMEEAQGVAARIARLVANG----------AKPSDCA 382

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKI 402
           +L R     P+     R  +  Y++
Sbjct: 383 ILTRINAQQPVFGAALRAARLKYRV 407



 Score = 48.0 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 36/128 (28%), Gaps = 35/128 (27%)

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                  + LE          + +   V I T+H +KGLE   VFL+     +  +    
Sbjct: 420 DDAASKRALLEAMGLDATGLAANDDLGVTISTIHASKGLEFKHVFLIGCSEGLLPYGSP- 478

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL+YVG+TRA D L +
Sbjct: 479 ----------------------------------ETGDALEEERRLMYVGITRAEDSLHL 504

Query: 665 CKHSNTSN 672
                   
Sbjct: 505 SYARTKDG 512


>gi|207341417|gb|EDZ69478.1| YOL095Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 707

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 82/516 (15%), Positives = 159/516 (30%), Gaps = 102/516 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            +     E      V+  +DLII      +L      ++     +  +   +LIDE QD 
Sbjct: 156 PVIEKLVELMDNCKVMTNDDLIIRAKKYLELDSSDSDASSFTQDLHNKYKVVLIDEFQDL 215

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
                 +I  +              + L   GD  QSIY F G+  + + +   ++ K  
Sbjct: 216 YPSLAPLITMIC-----------KGKQLIMFGDTNQSIYGFLGSNNEIMSQLDNLHPKNF 264

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
           T      ++++L  +FRST +I+++  K+ + P   + + +D+  T              
Sbjct: 265 T------TVLKLFDNFRSTPEIISLASKIINRPLAEKQIIDDTDETPS------------ 306

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L  ++ S    Q              +      +  +  I   I+ +I           
Sbjct: 307 ELVRKLPSGVSPQ--------------IMTFDDLAAESEFIIDKITQLI----------C 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRF 427
              +  DI +L R       I  + +     Y I            D L I+ L+ + + 
Sbjct: 343 SSAKFSDIAILSRTNSHLTAIASILK----KYGIPYQKLKSQPDWMDDLRIQFLLDILKV 398

Query: 428 ILSQEDDLSFVC--------------MLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQK 472
                D+                   +  S L    +  I  +      +  ++++Y+  
Sbjct: 399 CSLASDEKHNREFNTGDKWQSNFSILVTMSALKGIGDASIQALYKACGLKNLSIWKYLTM 458

Query: 473 FANCGISKFQHVIKYIHELIHIAQFC----------SPHDFFTLI--------LGAKKGR 514
             N        + K +                     P +    +        L     +
Sbjct: 459 VPNFEWPLGLSIKKKMENYTSNLYEMIENDQVHQLDDPMELLEKVASITNNLNLNPTYFQ 518

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA------- 567
               ++   E    L E       ++ N    +  +   LE Y       H +       
Sbjct: 519 SLSDAQSSLEFKTHLQEMAQVMKVSKSNKPPGISFVKWFLETYFDQTMVFHQSQQALQTT 578

Query: 568 NHNEVRIMTVHTAKG-LESPVVFLVDTGSQVFSHKH 602
               V++ T+H+AKG LE P+VFL +     F    
Sbjct: 579 GPGTVKLSTIHSAKGVLEFPIVFLTNGSMSNFPMDT 614


>gi|171742438|ref|ZP_02918245.1| hypothetical protein BIFDEN_01549 [Bifidobacterium dentium ATCC
           27678]
 gi|283456476|ref|YP_003361040.1| ATP-dependent DNA helicase PcrA [Bifidobacterium dentium Bd1]
 gi|171278052|gb|EDT45713.1| hypothetical protein BIFDEN_01549 [Bifidobacterium dentium ATCC
           27678]
 gi|283103110|gb|ADB10216.1| ATP-dependent DNA helicase PcrA [Bifidobacterium dentium Bd1]
          Length = 502

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 86/271 (31%), Gaps = 64/271 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K     +DF+D+++    +L+  D ++     I   I  + +DE QD S +
Sbjct: 183 DVYQAYETEKTARGEIDFDDILLIACHVLESYDEAS---AAIRSSIGWLTVDEYQDVSPL 239

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++              S  R +  VGD  Q+IYSF GA    +L         + + 
Sbjct: 240 QHRLLTRWL----------SGNRNICVVGDPAQTIYSFAGASSYSLLDFAGEFGPLSAD- 288

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L   +RST  I+   ++V                 +  +S R       Q  
Sbjct: 289 ------ISLNRDYRSTPQIVNYANRVLKASPQR-------DDYLVLQSGREQGPRVTQ-- 333

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                       +S +  A+ +A  I+ +              +
Sbjct: 334 -------------------------TVYASDTEEAQGVAMRIAKLASQG----------V 358

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              D  +L R      ++    +     Y+I
Sbjct: 359 SPSDCAILTRINAQQQILCKALQEQHLRYRI 389



 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 35/120 (29%)

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           ++ N V I T+H +KGLE   VFL+     +  +   +                      
Sbjct: 418 SDMNGVTISTIHASKGLEFKHVFLIGCSEGLLPYGSPQDG-------------------- 457

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                             EE  RLLYVG+TRA D L +    +         R     + 
Sbjct: 458 ---------------DQLEEERRLLYVGVTRAEDTLHLSYARSKDGLNDGRGRRVSRFLS 502


>gi|184200504|ref|YP_001854711.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201]
 gi|183580734|dbj|BAG29205.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201]
          Length = 1241

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/512 (11%), Positives = 136/512 (26%), Gaps = 64/512 (12%)

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
               + DD+            + E     A       Q     +          +      
Sbjct: 634  GGRTSDDLLVQALGDGLLLELAEVRSDAAARVADMLQAGQDALD-----TPGATAESVLW 688

Query: 506  LILGAKKGRQQFISRFGNEVIDVLDE---------FLNFTLRN-EQNSYSSLQELISELE 555
             +  A     ++  R      + +                 R  +Q   ++    +  ++
Sbjct: 689  ALWEASGVGPRWRRRALAGGAEAVRADRDLDAVVGLFEAAERFVDQVPGATASAFMEYMD 748

Query: 556  QYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                      A +   + V + T   A G E   V +      V+ +  ++   +   + 
Sbjct: 749  HQELPMDTLAARAPAEDNVSVTTPAGAAGREWSHVVVAGVQQGVWPNTALRGQLLGTDVL 808

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
             D                V        +  + +  R     ++RA   L +   +    +
Sbjct: 809  TDALD-------HGPEQAVRLGAVDRLRQVRFDELRQFATAVSRARSGLTVTAVATQDEQ 861

Query: 674  KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ- 732
                       +         V+++     +   +         +  +TP    E   + 
Sbjct: 862  PSEFVDLV--ALGRGEETGITVEELDAPEPLTLRQLTGTLRRALNAVDTPETEREAAARL 919

Query: 733  ---------------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                                 +          D  EP  ++PS I+T  ++ L+  + + 
Sbjct: 920  LHEFATAQDPVAGAAPEQWWGVNPLTTEEALFDAEEPVRVSPSKIETVHRSPLDWFVGEA 979

Query: 778  QTFN-------RGLIIHKLLQVIFTLPEHKRKNFITSY---CTKNAKLWPAKEYKNLLLS 827
            +           G ++H + + +      +    +               A+E +     
Sbjct: 980  RATETTDLKRGLGTLVHDIAEHMPDADAVELITELRRRWPSLGMPEGWTGAQELERAETM 1039

Query: 828  ITRLLENPMMTTAMSCDSYSE-VSVSGKINCPK----KDIIISGRIDQISISQ-QNIFIF 881
            + +          M      E V+V G          +D +++GR+D++ +       + 
Sbjct: 1040 LRKF---AQYAREMRTRHERELVAVEGGFQVLVRDSARDALLTGRVDRLEVDAHGRHVVV 1096

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            + KT  H P     IP     QL+ Y+  L+ 
Sbjct: 1097 DLKTGRHKP-TGADIPEH--PQLAAYQVALQA 1125



 Score = 91.9 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/406 (11%), Positives = 110/406 (27%), Gaps = 56/406 (13%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLS--------METGNPTILKKAQT 52
           L++        +        W    F V    +   L         + +G       A+ 
Sbjct: 87  LRDLVSRRAAATISTPLVRAWQAYAFDVLRRAQAEELLTGIDLPPVLLSGPEQDAFLAEM 146

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           ++  +        +              Q  + T+    +  +L +++ + + E  ++  
Sbjct: 147 MRGHATGLGGAVVWPA----------DLQDALGTRGFRGQLRELFDRMNEYRVEPEQL-- 194

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYE--EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
                            A      Y+   A +   V D  +L+     +L++        
Sbjct: 195 ---AAWAGPLGHPEWRAAAAFRTEYQQVRALRMPNVFDPSELVDRAARVLEEHPD---FL 248

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            +  Q ++ +++D++Q+ +     +I  L              R      +   ++  F 
Sbjct: 249 SREQQRLDVVMVDDLQEATPSVHRLIGVLC-----------RGRDAVFTANPDTTVQGFR 297

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA P  +    R  + R          + L  S R +  +     +V        G   +
Sbjct: 298 GARPDLL----RTLEDRVGTPSHPVQRLHLHTSHRMSLPVNEAWQRVARAVPVIAGARTE 353

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                   +               V+   +         T     +   +S +  AR  A
Sbjct: 354 RAPEQPADTDPEPGGDPAD----GVNAPVTGPGTAGRLVTPDGVRVATFASPTAQARWCA 409

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                +            R I  +++ V+VR       +T     L
Sbjct: 410 DHFLRLH---------VLRGIPYREMAVIVRSGPQLSALTRQLASL 446


>gi|13638521|sp|P53528|UVRD_MYCLE RecName: Full=Probable DNA helicase II homolog
          Length = 714

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 90/699 (12%), Positives = 176/699 (25%), Gaps = 170/699 (24%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL----KKAQTLQQASQTQCIEERFSL 68
                +        ++  +   V    + G   +L       + L+        +  + L
Sbjct: 61  AVTFTQRAAAEMRSRLRALGAAVQAVSDFGVVRVLTFHAAAHRQLRYFWPRVIGDTGWQL 120

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L S F T         +    +    DL  +++ ++   I   +                
Sbjct: 121 LDSKFATVARAASSVRLHAGTDDVC-DLAGEIEWAKASLIGPEEYVAAVAAIGRDTPLDA 179

Query: 129 L-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA-----WIRYKIDQEINHILI 182
                + A YE  K +   +    + +   D L     +A      +  +        ++
Sbjct: 180 AQIASVYAAYEALKARGNGV--PGVTLLDFDDLLLHTAAAIENDAAVAEEFRDRYRCFVV 237

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD + +Q  V+ +   D             L  VGD  Q+IYSF GA P  +L   R
Sbjct: 238 DEYQDVTPLQQRVLSAWLGD----------RDDLTVVGDANQTIYSFTGASPCFLLDFPR 287

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                        +++ L   +RST  ++++ ++V +                       
Sbjct: 288 RFP--------DATVVRLERDYRSTPQVVSLANQVIAAAHGR------------------ 321

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  + +        +      S+  Y D   + ++ +          + +I   T 
Sbjct: 322 -------VADSKFQLSGQREPGPAASFHEYSDEPAEAAAVAASI-------ARLIEFGT- 366

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                       +I VL R    +         +     I+          +   IK  +
Sbjct: 367 ---------SPSEIAVLYRVNAQSEAYEEALTEV----GIAYQVRGGEGFFNRQEIKQAL 413

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
              +    +         L   +                    +            S+ +
Sbjct: 414 LALQRSAERSSQTEPNSPLSDVVRGV-----------------LEPLGLTAEKPVGSRAR 456

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
              + +  L  +A                                             Q+
Sbjct: 457 DRWEALTALAELADD----------------------------------------EVAQH 476

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L  L++EL                 V + ++H  KGLE   VFLV           
Sbjct: 477 PRLDLPGLLAELRLRADARHPPVVQG---VTLASLHAVKGLEWDAVFLVGLADGTLP--- 530

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                       I   L    +    EE  RLLYVG+TRA   L
Sbjct: 531 ----------------------------ISRALAHGAESEPVEEERRLLYVGITRARVYL 562

Query: 663 IICKH--SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +           +      + + +      +    + +
Sbjct: 563 ALSWALSRTPGGRQSRKPSRFLNDIAPQMGQNPASSRSR 601


>gi|229817193|ref|ZP_04447475.1| hypothetical protein BIFANG_02452 [Bifidobacterium angulatum DSM
           20098]
 gi|229784982|gb|EEP21096.1| hypothetical protein BIFANG_02452 [Bifidobacterium angulatum DSM
           20098]
          Length = 537

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/365 (15%), Positives = 116/365 (31%), Gaps = 69/365 (18%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSF--FLTQKFTPQKNIITQEINKKSPDLKEKL 100
             T    A    +       E  F  L      +T +   +  +  +  +     +++++
Sbjct: 118 AATFHSAALRQLRRVWADVCEAPFPRLIEDARDITMRAMRRVGLADRLDDMTVRAVRDEI 177

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLA---KYLNAHYEEAKKKNCVLDFEDLIINTN 157
             ++   +   +        +  + +   A     +   YE  K     +DF+D+++   
Sbjct: 178 NWAKVSLVAPSEVERVAAAVERCMPAGIDASHFADIYDAYELEKTARGEMDFDDILLMMC 237

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            +L++ D  A    +I   I  + +DE QD S +Q  ++R    D           R + 
Sbjct: 238 HVLEEFDEPA---ARIRHAIGWLTVDEYQDVSPLQHRLMRLWLGD----------NRNVC 284

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD  Q+IYSF GA    +L      +  A +       I L   +RST  ++   ++V
Sbjct: 285 VVGDPAQTIYSFAGASSYDLLGFADEFKPLAAD-------IRLDTDYRSTPQVVNYANRV 337

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            +               ++ RS+R                                 S  
Sbjct: 338 LAASPVRHD-------YLKLRSARANGSRV---------------------------SRN 363

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
              +  + A+ +A  I+ ++                 D  +L R            R  +
Sbjct: 364 IYETDLLEAQGVAARIAKLVANG----------ANPSDCAILTRINAQQAACCSALRTER 413

Query: 398 NDYKI 402
             Y++
Sbjct: 414 LGYRV 418



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 35/123 (28%), Gaps = 35/123 (28%)

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           L +       A       V + T+H AKGLE   VF+V     +  +   +         
Sbjct: 441 LVETMHEQDDAAVRKLGRVTVSTIHAAKGLEFKHVFVVGCSEGLLPYGSARNG------- 493

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                          EE  RL+YV +TRA D L +    +    
Sbjct: 494 ----------------------------DDLEEERRLMYVAITRAEDTLHMSYARSKDGM 525

Query: 674 KKS 676
              
Sbjct: 526 GSQ 528


>gi|330879358|gb|EGH13507.1| UvrD/REP helicase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 564

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 97/287 (33%), Gaps = 40/287 (13%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT-QEINKKSPDLKEKLKKSQD 105
           L   +   Q  +          L    L +   P+ ++   + +   + DL + L     
Sbjct: 284 LDIIRRFHQILKLPPEPRLIDRLEGIELLEAEIPRLSLQHYRNLWDPTLDLNDMLSAISR 343

Query: 106 EFIKIRDRFNTYKMFK--------STLASLTL-----AKYLNAHYEEAKKKNCVLDFEDL 152
              +  +     ++ +         + A L          +   YE   ++  ++DF DL
Sbjct: 344 AKDESIEATEYIRLAESMTRNAGGDSAALLRAEKCLEVASVYEAYERLMRERKLIDFGDL 403

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           I     L++     A +R  + +   H+L+DE QD +     +++++             
Sbjct: 404 ISYPVRLVETH---AEVRGALRRRHKHVLVDEYQDVNRSSVRLLKAIVG----------G 450

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
              L+ VGD +QSIY F GA    +                   I +L +++RS  +I+ 
Sbjct: 451 GENLWVVGDARQSIYRFRGASASNMAHFSEDFP--------GAVIEKLGVNYRSKQEIVD 502

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
                FS        +      +   +SR G     +L     +  +
Sbjct: 503 TF-ATFSTAM----KASQGALPLSLTASRGGAGAHPELSIVGSTAEE 544


>gi|27764620|ref|NP_776242.1| Yga2F [Corynebacterium glutamicum]
 gi|27657791|gb|AAO18219.1| Yga2F [Corynebacterium glutamicum]
          Length = 552

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 85/595 (14%), Positives = 174/595 (29%), Gaps = 113/595 (18%)

Query: 29  SDINKYVSLSMETGNPTILKKAQT-LQQASQTQCIEERFSLLSSFFLTQKFT---PQKNI 84
            D      L +E          +  +  A+     +       + FL        P++ +
Sbjct: 5   EDWRPSDGLVLEPNALAAATMEEQNVVVAAGPGAGKTELLAQRADFLLHTGNCPYPRRIL 64

Query: 85  ITQEINKKSPDLKEKLKK-----SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
                   + +L++++++                    ++  +   +LT    L   Y  
Sbjct: 65  AISFKVDAARNLRDRVRQRSGSQLAARLDSFTFHAFAKRIIDNYRPALTGQDTLIPDY-- 122

Query: 140 AKKKNC-----VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
                       + F DL+     +LK    +  +   + Q   H+ +DE QD +  Q++
Sbjct: 123 RLDARNRIQDEQITFNDLVPIALKILKSNRYARNV---VRQTYGHVFLDEFQDATDTQYK 179

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +I+ L  D             L AVGD KQ I ++ GA    +   +             
Sbjct: 180 LIKELFCDSAT---------ILTAVGDSKQKIMTWAGALDGILHTFENDFSASF------ 224

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              + L  +FRS  ++  + +++ +                             ++    
Sbjct: 225 ---LPLYQNFRSAPNLRRMQNRLIA-----------------------------EMDPAA 252

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
           VS              S FD+   ES A      +A  I + +             +  +
Sbjct: 253 VSPDKDLTGDNGIIEISGFDTDADESEA------LADRIQSWLDRG----------VNPR 296

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVV-GNDRFILTDHLAIKDLMALGRFILSQED 433
           +I VLVR  + T L T        +  I      +   L    A   +    R I     
Sbjct: 297 EIAVLVR--QQTSLYTAPLGRELANRGIPFRNEQESQDLNAEPAAALVFNFLRVIADDRQ 354

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL-I 492
             ++V +++                    +    E   +F     +  Q   + +  L  
Sbjct: 355 ADAYVELMRFSNR----------------SSFSEEEGLQFDRRLKNLLQEARQQVRTLKR 398

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
                     +    L               +    L+E +N            L   + 
Sbjct: 399 DHMGTQFWSRWIERFLSLISRPSLVTLSPNYQQGRRLEEVINQA----------LNAFLE 448

Query: 553 ELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           EL       +     +    VR +++H +KGLE   V ++   +++F +   + +
Sbjct: 449 ELSICGDAVLALKRLSGKEAVRFLSIHKSKGLEFDKVIILGVENEMFWNDPSESL 503


>gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM
           5427]
 gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM
           5427]
          Length = 837

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/435 (15%), Positives = 149/435 (34%), Gaps = 50/435 (11%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
           +++ K +D+       +           L   Y     +N  +DF DLI+    LL++ +
Sbjct: 167 EDYFKSQDQLGQLGRRREDSFLRRFGLKLLNTYRRYLLENNCIDFMDLIVEAKYLLEQPE 226

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               I  K  ++ + I +DE+QDTS  ++++++ L              R L   GD  Q
Sbjct: 227 ----ILAKWRKQYDVIQVDEMQDTSSREYDILKLLAG------------RQLSLFGDFNQ 270

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           +IY + G+ P    +     ++  +        I L +++RST ++L   +   S     
Sbjct: 271 TIYEWRGSNP---HQMTAEYRRDFSPLE-----IHLKINYRSTKNLLEAANGYISSSRLY 322

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT-SYFDSLPQESSAS 343
                     ++  +    +   + + E    + +          +    +S+   +  +
Sbjct: 323 ---------PMQCIAKASNEGEKITILEAGTKEEEISLLEIAIKESMENTNSIAVLTRTN 373

Query: 344 ILARRIAYTI-SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
             A++IAY+     I    I      R  + K++L       +          L    + 
Sbjct: 374 EYAKKIAYSFNKRGIECTVIEDTKFFRKKEVKELLAFYDYSINDRNGH----ALLKLGQH 429

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
             +    ++L +    K           + D      +L      ++ ++I  +  +   
Sbjct: 430 PYLNMPNWLLGELRNSKSCYMYLH-DWFKSDSKDPYTIL---FEAYTHNNIVVLDVESTG 485

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             T+ + + + A     K + V+  +  L+       P                 + + G
Sbjct: 486 LSTIKDDVIQIAAIRYGK-EGVVDQLDILLK------PTKSVGESYYVHGFSDDLLQKEG 538

Query: 523 NEVIDVLDEFLNFTL 537
            E  + L +F++F  
Sbjct: 539 MEPKEALKQFVHFIQ 553



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 64/225 (28%), Gaps = 40/225 (17%)

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           + + +  +     E +       +   C +++++  +  I   +          F     
Sbjct: 629 TSEVLSHLLKHIEEKKQERLEKIEAYGCYVNEYREKLATIKSYLLTHNLTDGLTFLMNEC 688

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
             K             +  +++E  + TL  E N  + L            +        
Sbjct: 689 DFKGYYHSSQIETIRNLYRIINELEDQTLSYEDNIINLLA-----FSALHYSEIEQSDLF 743

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              + I+TVH AKGLE   V++     + F                              
Sbjct: 744 KGRIPIITVHQAKGLEFDEVYIAGCNDKTFPS---------------------------- 775

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                   + LK+    E  RL YV +TRA  +L I  H      
Sbjct: 776 -------YRSLKEHQLGEEMRLFYVALTRAKKKLYISYHQEAPKS 813


>gi|210616711|ref|ZP_03291193.1| hypothetical protein CLONEX_03414 [Clostridium nexile DSM 1787]
 gi|210149686|gb|EEA80695.1| hypothetical protein CLONEX_03414 [Clostridium nexile DSM 1787]
          Length = 723

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 107/293 (36%), Gaps = 21/293 (7%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++  +    + F++ I     LL++      IR K+    ++IL+DE QD   +
Sbjct: 439 AIKKLYDQKFQAGGYIRFDEQISLAVWLLEQFPG---IRKKLQNMYSYILVDEAQDIDEM 495

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q ++IR L E+         S   +   GD  Q+IY F G   K +L   ++  +     
Sbjct: 496 QGKLIRLLVEE---------SNPKIAIFGDTDQAIYGFRGGSNKFMLEFLQLYPEALE-- 544

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I+L  +FRS+ +IL + +++ S  +    +   S  +   +   +      ++ 
Sbjct: 545 ------IKLNDNFRSSKEILDMANRLISHNKTRVPMQMVSHLSTGRKPMVLSNFRANRIG 598

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + +    +        +  +  +         I A  + +  S  +    +     +  +
Sbjct: 599 QLLHDLLEDGYEQGDIAVIARTNKDLLGLGKLIDAFNMEHQNSEKLRFLNLKYYLYQDSV 658

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
             + +L L+   +      ++   L +   +SV             ++D    
Sbjct: 659 -YQTVLDLLSLHQGILTDDYIWYRLLSKLGVSVQKAHSDKCIYESYLEDQAIY 710


>gi|46190607|ref|ZP_00121256.2| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium
           longum DJO10A]
 gi|189438973|ref|YP_001954054.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|312132413|ref|YP_003999752.1| uvrd1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|189427408|gb|ACD97556.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A]
 gi|311772813|gb|ADQ02301.1| UvrD1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 401

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 107/325 (32%), Gaps = 58/325 (17%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLA--KYLNAHY 137
           +    T        D+  ++  ++   + + D         +   A L  A    + + Y
Sbjct: 15  RATARTDADPLTVRDVLAEINWAKISLVAVEDYARACAIAHRQPPAGLDTARFADVYSAY 74

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           E+ K     +DF+D+++    ++     +A    +I   I  + +DE QD S +Q  ++ 
Sbjct: 75  EQEKTSRGEIDFDDILLLVCHIMDGFPEAA---AQIRSTIGWLTVDEYQDVSPLQHRLLT 131

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        +  R +  VGD  Q+IYSF GA    +LR            G   + 
Sbjct: 132 L-WLGGGGPDGKSAMNRNVCVVGDPAQTIYSFAGASSWDLLRFADEF-------GPLAAD 183

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           + L   +RST +++ + ++V +   N           ++  S+R                
Sbjct: 184 VNLNTDYRSTPEVVNLANRVLAAAPNR-------EDYLKLVSARESGPRVT--------- 227

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                                  S    A+ +A  I+ ++              +  D  
Sbjct: 228 ------------------RTAYESDMEEAQGVAARIARLVANG----------AKPSDCA 259

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKI 402
           +L R     P+     R  +  Y++
Sbjct: 260 ILTRINAQQPVFGAALRAARLKYRV 284



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 36/128 (28%), Gaps = 35/128 (27%)

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                  + LE          + +   V I T+H +KGLE   VFL+     +  +    
Sbjct: 297 DDAASKRALLEAMGLDATGLAANDDLGVTISTIHASKGLEFKHVFLIGCSEGLLPYGSP- 355

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL+YVG+TRA D L +
Sbjct: 356 ----------------------------------ETGDALEEERRLMYVGITRAEDSLHL 381

Query: 665 CKHSNTSN 672
                   
Sbjct: 382 SYARTKDG 389


>gi|23464718|ref|NP_695321.1| DNA helicase II [Bifidobacterium longum NCC2705]
 gi|23325284|gb|AAN23957.1| probable DNA helicase II [Bifidobacterium longum NCC2705]
          Length = 524

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 107/325 (32%), Gaps = 58/325 (17%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLA--KYLNAHY 137
           +    T        D+  ++  ++   + + D         +   A L  A    + + Y
Sbjct: 138 RATARTDADPLTVRDVLAEINWAKISLVSVEDYARACAIAHRQPPAGLDTARFADVYSAY 197

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           E+ K     +DF+D+++    ++     +A    +I   I  + +DE QD S +Q  ++ 
Sbjct: 198 EQEKTSRGEIDFDDILLLVCHIMDGFPEAA---AQIRSTIGWLTVDEYQDVSPLQHRLLT 254

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        +  R +  VGD  Q+IYSF GA    +LR            G   + 
Sbjct: 255 L-WLGGGGPDGKSAMNRNVCVVGDPAQTIYSFAGASSWDLLRFADEF-------GPLAAD 306

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           + L   +RST +++ + ++V +   N           ++  S+R                
Sbjct: 307 VNLNTDYRSTPEVVNLANRVLAAAPNR-------EDYLKLVSARESGPRVT--------- 350

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
                                  S    A+ +A  I+ ++              +  D  
Sbjct: 351 ------------------RTAYESDMEEAQGVAARIARLVANG----------AKPSDCA 382

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKI 402
           +L R     P+     R  +  Y++
Sbjct: 383 ILTRINAQQPVFGAALRAARLKYRV 407



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 36/128 (28%), Gaps = 35/128 (27%)

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                  + LE          + +   V I T+H +KGLE   VFL+     +  +    
Sbjct: 420 DDAASKRALLEAMGLDATGLAANDDLGVTISTIHASKGLEFKHVFLIGCSEGLLPYGSP- 478

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                   EE  RL+YVG+TRA D L +
Sbjct: 479 ----------------------------------ETGDALEEERRLMYVGITRAEDSLHL 504

Query: 665 CKHSNTSN 672
                   
Sbjct: 505 SYARTKDG 512


>gi|291456383|ref|ZP_06595773.1| putative DNA helicase II [Bifidobacterium breve DSM 20213]
 gi|291381660|gb|EFE89178.1| putative DNA helicase II [Bifidobacterium breve DSM 20213]
          Length = 518

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 55/272 (20%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE+ K     +DF+D+++    ++     +A    +I   I  + +DE QD S 
Sbjct: 185 AAIYDAYEQEKTSQGEIDFDDILLLVCHIMDDFPEAA---AQIRSSIGWLTVDEYQDVSP 241

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++              +  R +  VGD  Q+IYSF GA    +L+        + +
Sbjct: 242 LQHRLLNL-WLGGGGPNGKAAMNRNVCVVGDPAQTIYSFAGASSWHLLQFADEFGPLSAD 300

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L   +RST +++ + ++V +   N           ++  S+R         
Sbjct: 301 -------INLNTDYRSTPEVVGLANRVLAAAPNR-------EDYLKLVSAREKG------ 340

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                   S     +  + A+ +A  I+ ++             
Sbjct: 341 ---------------------VRISRTAYDTDDLEAQGVAARIARLVAQG---------- 369

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            +  D  +L R     P+     R  +  +++
Sbjct: 370 AKPSDCAILTRINAQQPVFGAALRAARLKFRV 401



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 37/119 (31%), Gaps = 35/119 (29%)

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           LE        +  +    V I T+H AKGLE   VFLV     +  +   +         
Sbjct: 423 LEAMGLDATGSQQSTDPGVMISTIHAAKGLEFKHVFLVGCSEGLLPYGSPEPG------- 475

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                        T EE  RL+YVG+TRA D L +        
Sbjct: 476 ----------------------------ETLEEERRLMYVGVTRAEDSLHLSYARTKDG 506


>gi|299782707|gb|ADJ40705.1| ATP-dependent helicase/nuclease subunit A (ATP-dependent
           helicase/nuclease addA) [Lactobacillus fermentum CECT
           5716]
          Length = 852

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 64/542 (11%), Positives = 137/542 (25%), Gaps = 112/542 (20%)

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            +E+++ +            E +         K     +    L  +AQ     D    I
Sbjct: 35  LTEEELAERVAGDPAGLATKEELGVNCGLIYLKLARFFELRDHLRRVAQRRPLVDLIWTI 94

Query: 508 LGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
             A            G +    L          E++ +  L + I  +EQ          
Sbjct: 95  YQATGYLDYVGGMSGGPQRQANLHALYERASGYEESGFKGLYQFIHFIEQMQKKNDDLGE 154

Query: 567 A----NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND--DPGIPI 620
           A      + + +MT+H +KGL+ P+VFLV+T  Q  + +    +     L          
Sbjct: 155 ATTALAGDAINVMTIHKSKGLQFPIVFLVETTHQFQADRDPVTIEPQAGLGFTYVDSTAN 214

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN-------- 672
              + K      + L +  K+  + E  RLLYV +TRA  +L I  +   ++        
Sbjct: 215 ETMRVKHPLVQQAALKEKKKRQDRAEEMRLLYVALTRAEQRLFITGYVKDADLTKKMDKW 274

Query: 673 -------------EKKSNQRTWYDMVYDSFHNDERVKKIKL------------------- 700
                          +   ++  D +  +         ++                    
Sbjct: 275 NRAFDSASPLLTTTTRLKGQSMLDWIMMTLVRTANFPTLREGVEAAATPLRGLTKAAYQI 334

Query: 701 ----TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                + +        +   +           T +Q   + +       P +        
Sbjct: 335 KLQNADQVQAALNTPLDLHPNATAEQATPAAATSRQFKADLERVLNFTYPDQVATQTTAF 394

Query: 757 LNPSTIDTKGKTNLESLLS-------------------------------------DNQT 779
              ST+         + L                                      +   
Sbjct: 395 QAVSTVREAFARQDPTNLEMGRLEIDRDQIKEAGAYLAPEERAFENPAFITGASDQEPTG 454

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKN--FITSYCTKNAKLWPAKEYKNL-LLSITRLLENPM 836
              G   H + Q +             +    T++  +   +    + +  +    +  +
Sbjct: 455 TAIGTATHLVFQKLPLTEPLDEGAVRALIKSLTESGLIDNPQVAAGIDVAGVVSFYQTGL 514

Query: 837 MTTAMS--CDSYSEVSVSGKINC----------PKKDIIISG---------RIDQISISQ 875
                +     + EV  S  ++              +++I G         R D+    Q
Sbjct: 515 GQVITAHPEQVHREVPFSMLLSAHELFSGIGATDDSEVLIHGDHRRLRPTRRPDRPVRLQ 574

Query: 876 QN 877
             
Sbjct: 575 DR 576


>gi|255102289|ref|ZP_05331266.1| UvrD/REP helicase [Clostridium difficile QCD-63q42]
          Length = 1159

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 79/538 (14%), Positives = 161/538 (29%), Gaps = 86/538 (15%)

Query: 178  NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             ++ IDE QDT   Q ++IR   + F            LF VGDEKQ IY F GAE    
Sbjct: 672  KYLFIDEFQDTDNKQIQLIRFFADYF---------NIALFVVGDEKQCIYGFRGAE---R 719

Query: 238  LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                 +         + +    L  ++R+   ++  +++VFS   N     ++    +  
Sbjct: 720  TSFLELTCVDTNFQQRNWISCFLRKNYRTEEPLVKKINEVFSKMPNDFFPYQNKDKLVAQ 779

Query: 298  RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            +       G  + ++                            S + L   +   +  M 
Sbjct: 780  KGIGRIYSGCYEQFKY---------------------------SENNLIELVDNCVKRMK 812

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK-ISVVGNDRFILTDHL 416
              +               I +L R   +        R L  + K   +  ++  +  +  
Sbjct: 813  KNNED-----------GQIAILTRNNYEV----DQIRALFGENKEYEIKFDNGGLFYNTD 857

Query: 417  AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            A+ D   L  F++  ED      +L++P  +F   +      Q +E   V  +    +  
Sbjct: 858  AVIDFYKLVEFLMDTEDGAKRYSILETPYSDFRIKESKIKLYQAYEKMDVETFEIIRSGN 917

Query: 477  GISKFQHVIKYIHELIHIAQFC---SPHDFFTLILGAKKGRQQFISRF------------ 521
                 +     ++                   +I+   K  + ++               
Sbjct: 918  NHVSLRKYYDVLYNYGKKHPNLKNSPSLKILRMIVNEIKPWEHYVPERYKTVDFNDICNQ 977

Query: 522  ------GNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--------EQYPPTIKRAHSA 567
                   NE    L +     + + +  Y +L ++   L        +      K     
Sbjct: 978  NKLIEARNEYRQNLFQLFQKLIDDNKTDYLTLNKIHQILTIGIFAMQDIDIDLPKNNFFG 1037

Query: 568  NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK- 626
                V   TVH +KGL+   V +  T + +   +   +       N+             
Sbjct: 1038 EKISVLCTTVHKSKGLQYHTVIMPFTMNDITESRGSTQFIYREDTNEIYMQLKEADGKCL 1097

Query: 627  -SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
               +           ++ Q E  R+LYV +TR+              +  ++++  + 
Sbjct: 1098 IYESTNFDCENNKKNETIQSEELRILYVALTRSKKFFYFMVDEERFEKNNTSKKNCWA 1155


>gi|28493487|ref|NP_787648.1| DNA helicase [Tropheryma whipplei str. Twist]
 gi|28476529|gb|AAO44617.1| DNA helicase [Tropheryma whipplei str. Twist]
          Length = 993

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 115/868 (13%), Positives = 241/868 (27%), Gaps = 168/868 (19%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 L   Y  A+  N      ++I     L     +              I++DE Q
Sbjct: 169 WKTYAALIEKYRLARTSNNAFTAVEIIERAAQLASTGYLP----------YRVIMVDEAQ 218

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           + +     +  +L               T+   GD  +++     A P   L        
Sbjct: 219 ELAAEHMRLFSALAR----------RNITVILFGDPDKAV--ARSASPSIFLDFSE---- 262

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +  L   FR+  ++      + S           S    R   +     G
Sbjct: 263 ---------KLFVLKTVFRTPRNL-----HLLSQKICQGIGVTGSVLAHRQSFNSSILEG 308

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V+                         ++   S A+ +A      I+       +    
Sbjct: 309 RVE-------------------------TVISSSRATSMAD-----IARWFREKHLLE-- 336

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKDLMALG 425
               I  +D+ +++ +R    + +         + + V        L++      ++   
Sbjct: 337 ---GIDWEDMALIIFQRSSAEVYSHFLE----RFGVPVQILGGGLNLSEKPIAGAILNAI 389

Query: 426 RFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICTQRHE---------TETVYEYIQKF- 473
                 +     + V +L SP+  F    + K+  +             E +      + 
Sbjct: 390 ELACFPDILTGKTLVKLLLSPIGGFDVFLMRKLTIELKRIAPKNIQVLNERLLWAFHAYR 449

Query: 474 ---------------ANCGISKFQHVIKYIHELIHIAQFCSPH--DFFTLILGAKKGRQQ 516
                          A+      + + + +  L  + +  +         +      +  
Sbjct: 450 KLQTQDTDEVYRVFLASRIGRSLKKIFECLISLERLYREDNVSLPVLIWHVYSFLNLKSA 509

Query: 517 FISRFGN---------EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                           E +  L +  +   + +    + L  L   +    P    +   
Sbjct: 510 VSKEPWQTSKVSHRVLEEVIALQKLADAVSKKDPLCSAGLI-LQKIINAEVPVDNLSIRE 568

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               V I+T  ++ G E   V + D             +H M S   DP + +    +  
Sbjct: 569 KRGCVTILTPASSVGYEYRAVVITDIQ----------GLHKMDSTQLDPELALADINNI- 617

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                S  ++      +    R LY  +TR++  L++       + + S    +Y    D
Sbjct: 618 ---PFSRYLESKLAGRRHNLLRTLYQAVTRSTSDLLVSVI---DSAETSPSWLFYAFFSD 671

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
               +     + L   + +          +    + L           + +      S  
Sbjct: 672 YPSCELSSLPLTLRGIVTQLRLDLERDPGNTEAASALRLLAKEGISQADPQNWYGYLSRT 731

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQ-------TFNRGLIIHKLLQVI------F 794
           +N       + PS +D      L                   G IIH+ +Q +       
Sbjct: 732 ENKSYVMDSIKPSVLDKFHTCPLGWFTDQLDCNRYPGNATEIGTIIHRCMQELTCDNRQP 791

Query: 795 TLPE-HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE-----NPMMTTAMSCDSYSE 848
            L E               ++    +E K L+  I +L++     +    T ++    SE
Sbjct: 792 NLNEFLDYAYAKLREADFESRWVLEREKKRLVGIIRKLVDYLIDFDAHGGTLLA----SE 847

Query: 849 VSVSGKINC-PKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            S S  +N    + I+ISG+ID++   S   I I + KT   +  + +        QLS 
Sbjct: 848 KSFSFDLNVFKDRSIMISGQIDRLERLSSGEIRIVDLKTGSSLLSKNDAESN---LQLSA 904

Query: 907 YEKILKDS---YPNKSLVCLLIYVSEPK 931
           Y+  ++     Y       +LIY +   
Sbjct: 905 YQLAVEHLDIVYETLP-SAMLIYPAVGT 931


>gi|221057069|ref|XP_002259672.1| helicase, belonging to UvrD family [Plasmodium knowlesi strain H]
 gi|193809744|emb|CAQ40446.1| helicase, belonging to UvrD family, putative [Plasmodium knowlesi
           strain H]
          Length = 976

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 84/660 (12%), Positives = 178/660 (26%), Gaps = 136/660 (20%)

Query: 131 KYLNAHYEEAKKKNCVL--DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +     Y+   +    +  DF+DL+I T  L+K+ +    IR  I  E +++  DE QD 
Sbjct: 339 EKFYEEYKRILQNAKHIYYDFDDLLIETYRLMKEDED---IRNSILAEWHYMFCDEFQDI 395

Query: 189 SLIQWEVIRSLT--------------------------EDFFVGKNTHSSPRTLFAVGDE 222
           +  Q+ +++                                     TH S R L  +GD+
Sbjct: 396 NTTQFNILQFFANGSCGRYGSGRGAPHDQHPPNDTIPSGRGNSPNGTHESDRGLTVIGDD 455

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIYSF GA      +  +              + +L  +FRST +I+ V   +     
Sbjct: 456 DQSIYSFRGAHINVFNKIMKE---------HNCLLFKLGTNFRSTKEIVRVSCNLILHNA 506

Query: 283 N-AQGLSE-----DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           N     S           I H         +  L + +  +             S  +  
Sbjct: 507 NCRIEKSLQTNNVQGEKVIFHAFKTNNDQVSFILCKIIFLKKKYSYKFSDFVILSRTNRS 566

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +++   + +  +                G        D          T +     +  
Sbjct: 567 LRDTFKCMQSMNVRRRAMKFFHELVKTERGATDGPAEGD-------HHWTDITPDTFK-- 617

Query: 397 KNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDD---------LSFVCMLKSPL- 445
                I +   ++         I +L+ + RF+L+ +DD         +     ++  L 
Sbjct: 618 -----IPIKELNKKKAFFGSKEIVELITVLRFLLNVDDDIILKKAFKIIKNDRAIRGILD 672

Query: 446 ------FNFSEDDIFK-------------------------------ICTQRHETETVYE 468
                 F  +E++                                  +  ++      + 
Sbjct: 673 KLERSDFGVTEEEEEDVYSTDTGGSDPCGENRPSLFNRIERITHSYILWKKKQLKRNEFH 732

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           ++  F    I K       ++  +  A    S +     IL       + + R      +
Sbjct: 733 HLDVFTEEEIKKILDFFFCVNYFLKFASQPKSVYSLVMDILSKTGFVNRTLKRIRRRRNE 792

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-------------SANHNEVRI 574
            ++         +Q    S +E   ++++  P +                   +  E  +
Sbjct: 793 QVEH--QQDEEKDQRRKRSFEEFKDDMDENHPDLVNELKIKHDLRTHFGLSEEDLAEEEM 850

Query: 575 MTVHTAKGLESPV-----------VFLVDTGSQVFS-HKHIKKMHIMPSLNDDPGIPIWI 622
             +     +                 +          H  +    +  +         W 
Sbjct: 851 QNIFVLLEMTIEYKPNQINEKCSDCLICFLNDFKNDIHDRMLVEKVTLTTIHKSKGLEWK 910

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                  E  ++ YVG+TRA   L +      ++  + N  + +
Sbjct: 911 VVFIVNAMEGEIPYAVENSRDIIEERKIFYVGITRAKFFLYLLCFLQNNHTAEKNTVSRF 970


>gi|298706895|emb|CBJ25859.1| ATP-dependent DNA helicase [Ectocarpus siliculosus]
          Length = 1196

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 75/556 (13%), Positives = 145/556 (26%), Gaps = 137/556 (24%)

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           E    G     +P ++F VGD  Q IY F GA+   V R             +    + L
Sbjct: 406 EGAAGGTRPQPAPPSIFVVGDTDQCIYKFRGADYTNVARFVEDF--------KACRTVML 457

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++RSTA+I      V        G S  +TT ++      G    V +      + ++
Sbjct: 458 RENYRSTANIARAATAVIGQVSGRAGQSTIATTAVQG----DGLPIGVMVCSDAAGEAEA 513

Query: 321 QCNPQQESWTSYFDSLPQESSASIL-ARRIAYTISNMIGTDTIFSNGKKRVIQAKDI--- 376
             +  +  WTS      + +      A+  ++  + +         G +R  + +++   
Sbjct: 514 VAHHLELYWTSGRVQPSEMAVMYRTNAQSRSFEEACLRKALPFVVVGAQRFYERREVKDC 573

Query: 377 ------------------LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR----FILTD 414
                              +    R            L    +  V G         L +
Sbjct: 574 LVYLRLAANPRDALAMRRAINTPTRGIGAKTEQALEALSRSARKVVPGLTLPECLLSLLE 633

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-------------------------FS 449
              + +L  +        D+       +   F                          + 
Sbjct: 634 DGQLDELEGVLGA---PWDESGAPSFPQEGAFGGGVGTWPGESYDDAFGGDAEENEDGWR 690

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
              + ++   R       + I+       +K +   + +  L   +   +  +    +L 
Sbjct: 691 GFSVLRVRALREAFSERGDEIEGPTKAQANKLRVFARLLCRLRVASATQTVPELLRTVLE 750

Query: 510 AKKGRQQFISRF-------GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               R+             G +    + E        + +  +    L++ L +      
Sbjct: 751 ETGMRKHVTETLSTTGPAEGEDRWQNVVELERAASNPKFSGTAGDGALVAFLNEVSLVGG 810

Query: 563 RAHSAN----------------------------HNEVRIMTVHTAKGLESPVVFLVDTG 594
                                                +++MTVH +KGLE   VF+    
Sbjct: 811 DDPEQARKQREEEEAAAAAGGGNGGQASPVPGVKPPMIQLMTVHASKGLEFDTVFVAGCE 870

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              F  K                                           +E  RL+YVG
Sbjct: 871 EGTFPMKDTTD------------------------------------DEMDEERRLMYVG 894

Query: 655 MTRASDQLIICKHSNT 670
           MTRA  +L +      
Sbjct: 895 MTRAKARLFLTWRRKR 910



 Score = 92.7 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 71/213 (33%), Gaps = 9/213 (4%)

Query: 8   SLNESYELIYKDLWPLPYFQVS--DINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  E    + K +      QV+    +   +  +      +      L         E+ 
Sbjct: 142 ASEEMRARVRKTVGEDVSGQVALGTFHSICARLLRRHGDALPAVVPGLDGRFSIFDTEDS 201

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK---LKKSQDEFIKIRDRFNTYKMFKS 122
             LL+     +     K +    +      LK +    +    +   + +R  +      
Sbjct: 202 RRLLTDII-KEMGQDIKEVKPNMMRSSISKLKSQGLGPQDIAKKSEDMLERGKSTGFVGG 260

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                 +   +   Y+    ++  LDF+D+I+    LL++      +   + ++  HIL+
Sbjct: 261 KARHAKMVAEIYTKYQARLIQSNALDFDDIILVALRLLRQD---KEVFRSVGRQYRHILV 317

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
           DE QDT+  Q++++  +       +      R 
Sbjct: 318 DEWQDTNGPQYDIVLEIVRAGREAQQAREDNRR 350


>gi|172040183|ref|YP_001799897.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
 gi|171851487|emb|CAQ04463.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum
           DSM 7109]
          Length = 1188

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 92/806 (11%), Positives = 205/806 (25%), Gaps = 111/806 (13%)

Query: 34  YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ-EINKK 92
             +        +  +  + L  A       +   LL+           K+I         
Sbjct: 138 AFAALRSMLLASDREAPRLLTGAEH---DADVRLLLAGHVEDGAGAWPKHIRPALGYVGF 194

Query: 93  SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV--LDFE 150
           +  L++ L ++++    +     T    K        A      Y + ++      L+  
Sbjct: 195 ARQLRDLLLRAEER--GVGPGELTALGEKYDQPMWVGAGQFLDEYRQTRRLAQSISLNAS 252

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           +L+  T   +      A    +  +++  ILID+  +      E +              
Sbjct: 253 ELLHTTLQEMADGPGRAQ-LDRWREKLRLILIDDAHNLDPAAAEFLEQFF---------- 301

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
           +    +   GD  Q ++ F GA+ + + +              +   + L  S R  A  
Sbjct: 302 TPETRVVLAGDPDQCVFHFRGADEELLSKYAAD----------ENHRVVLSGSQRFGAPT 351

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
              ++ +     +               +          +         +     + +  
Sbjct: 352 ARAINALTGHLPHVDTRIPLRVAEGAEAAQEAEATAGELVAPDAGRAGATSGAGGERNQP 411

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                    ++              +  TD +     +  +  +D+ V+VR   +     
Sbjct: 412 IRVLRANSGTAE------------RLHITDALRRAHVRDGVAWQDMAVIVRSVGEIAP-- 457

Query: 391 FLTRFLKNDYKISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF- 448
              R     + + V       IL +   I+ L+          ++     +++S +    
Sbjct: 458 --IRRALLTHGVPVRVDQTSIILAEQPLIRLLLTALEATYRPLENSEVRVLMESMVGGAD 515

Query: 449 -----------------------------------SEDDIFKICTQRHETETVYEYIQKF 473
                                              S D +  +       E   E+   F
Sbjct: 516 PIMVRRLERVLAQALARQRLQGKPVPENTAGLPFQSSDALSTLLNGTASAEDAAEWTAGF 575

Query: 474 ANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISR------FGNEVI 526
            N  +   Q +   +           S       I  A     +   R      FG++  
Sbjct: 576 NNRELQILQDMSDVLTAGREAQRAGQSVEMVLWEIWKATGLDTRLQERALRGGTFGSQAD 635

Query: 527 DVLD---EFLNFTLRN-EQNSYSSLQELISELEQYPP-TIKRAHSANHNEVRIMTVHTAK 581
             LD      +      E++  +S++    E+      T  R      N V I+  H A 
Sbjct: 636 QDLDSVMMLFDMAGDFVERHPNASIRTFCEEVRAQELPTGGRERGVASNAVEILPAHAAV 695

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           G +   V +       +                D               I          
Sbjct: 696 GRQWHTVVVTRVQEGSWPAGPTVGGLFGQLELVDL----------LDRGIEPGTRVSRVA 745

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM--VYDSFHNDERVKKIK 699
           S   E  RL  V ++RA+   ++    N S E     R   ++     +      V +I+
Sbjct: 746 SAVHEERRLFLVAISRATRSTLVTCIDNASVENGVPSRFVEEITDAPGAAVPLGTVDQIE 805

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-----SPIKNDINEP 754
             + + ++                L           +    ++L      SP +     P
Sbjct: 806 QEDPVGQEATPGEPVQGELGLGLELGDSAQQGGPAVQASPAEQLSSSDQLSPAEQLSALP 865

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTF 780
            +L    +  + +  +      +   
Sbjct: 866 RVLALEPLIAELRDVVTDPTQRHHRR 891



 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 86/287 (29%), Gaps = 22/287 (7%)

Query: 665  CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               +   +                    E +         +  +      +         
Sbjct: 843  ASPAEQLSSSDQLSPAEQLSALPRVLALEPLIAELRDVVTDPTQRHHRRVAAARNLAAMA 902

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF---- 780
            E        +D   + +        D      L+PS +D      L++   DN+      
Sbjct: 903  EAGIFGSHPVDWWGMAEPTTMERVTDRRGGVSLSPSKLDNIDNCALKTFFDDNRGAQEET 962

Query: 781  ---NRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE--N 834
                 G ++H + Q I       +   +      K A + PA E    L    + +   +
Sbjct: 963  NPMRVGTVVHAIAQAIVQQDLSLEDAQYAARTALKWAVVGPAFEVNAALERWEQGIANLH 1022

Query: 835  PMMTTAMSCDSYSEVSVSGKINCP------KKDIIISGRIDQISIS-QQNIFIFEYKTHH 887
              +T   +    +E  V  +++         +++ + GRID ++      + ++++KT  
Sbjct: 1023 SWITETCTQTEGTEWEVEQQLDTTLGTLPTGEEVFLRGRIDLMATDADGRVVVYDFKTGK 1082

Query: 888  HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY--VSEPKV 932
                  E        QL  Y+ ++  +   +     LIY   SE K+
Sbjct: 1083 TPKTAAEAQASR---QLGAYQFLVHVNRGKQPYGAHLIYPATSEGKL 1126


>gi|75760175|ref|ZP_00740233.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492339|gb|EAO55497.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 235

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 33/231 (14%)

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGK-----------TNLESLLSDNQTFNRGLIIH 787
                    K  + E      S   +                            RG  +H
Sbjct: 6   YEDATSYRAKQSVTEIKRNYQSEEGSDNAFIKKLRTPIKTRPRFMEKKGLTYAERGTAVH 65

Query: 788 KLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS 845
            ++Q +        +          N +L   ++ + + +  +    ++ +    ++  S
Sbjct: 66  AVMQHVDLKKPITVEVLQEQIAGMVNKELLTFEQAEEIAIEKVISFFDSDLGKRVLAAKS 125

Query: 846 -YSEVSVSGKINCPK----------KDIIISGRIDQISISQQNIFIFEYKTHHHV---PQ 891
              EV  +  +   +          + I++ G ID +   +  I + ++KT       P 
Sbjct: 126 VEREVPFTMMLAAEEAYQDWQGKSEETILVQGVIDCMIEEEDGITLIDFKTDTIEGKFPG 185

Query: 892 EIEHIP----YTHIAQLSIYEKILKDSYPNKSLV-CLLIYVSEPKVFIIPQ 937
             E         +  QLS+Y K L+ S     +    L +     V  I +
Sbjct: 186 GFEQAKPILEDRYKVQLSLYAKALEKSL-QHPVKEKCLYFFDGNHVVNIEE 235


>gi|38347859|ref|NP_941108.1| putative DNA helicase [Serratia marcescens]
 gi|190410201|ref|YP_001965702.1| trhI [Klebsiella pneumoniae]
 gi|226807596|ref|YP_002791290.1| TrhI [Enterobacter cloacae]
 gi|226809906|ref|YP_002791600.1| TrhI [Enterobacter cloacae]
 gi|38259336|emb|CAE51561.1| putative DNA helicase [Serratia marcescens]
 gi|146150994|gb|ABQ02760.1| trhI [Klebsiella pneumoniae]
 gi|226425821|gb|ACO53914.1| TrhI [Enterobacter cloacae]
 gi|226426132|gb|ACO54224.1| TrhI [Enterobacter cloacae]
          Length = 594

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 96/636 (15%), Positives = 177/636 (27%), Gaps = 139/636 (21%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
             A  LQ+    + ++          + ++    +      I      +  +  K     
Sbjct: 61  ALAAKLQKRLSKKDLDRVLVDTFHGLVKKQLDMIRWPGKMLIGPAQRSVIHRALKESGVT 120

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKY-------LNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +K  +           + +  ++         L   Y+   +K+ V D         + L
Sbjct: 121 MKFAEAEFVIDAIGREMDTDVISVRHNRQQIHLFNTYQALCQKDHVAD--------LNAL 172

Query: 161 KKRDVSAWIRYKIDQ-EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            K  V      K+   ++ H+++DEVQDT  IQ+  I   T           +      V
Sbjct: 173 SKFVVGQMHSGKMRTLDLTHLIVDEVQDTDSIQFSWIALHTR----------AGVYTSIV 222

Query: 220 GDEKQSIYSFH-GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           GD+ Q+IYSF      K   + ++  +          +I  L   FR   +IL V   + 
Sbjct: 223 GDDDQAIYSFRSSGGVKIFQQFEKHFR---------PNIFYLNTCFRCEPEILEVAGALI 273

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                       S              G V     V  +   Q                 
Sbjct: 274 GKNVYRYAKELRSA---------KKGGGKVTFRSYVDMEEQIQG---------------- 308

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                         I ++I  D                 +L R       +  L      
Sbjct: 309 --------------ILSLINQD------------PHGWAILSRNNAHLDELESLIEQ--- 339

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE---DDIFK 455
                V+        D     D+++L  F     D      +L   LF   E   D++  
Sbjct: 340 ----PVIRYGGKSFWDEKETSDVLSLMAFFRQSNDPRLMKRVLA--LFGEQESVLDEVAL 393

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
               R  T       +  +    +   + +++  E     +        T  + +   + 
Sbjct: 394 SMRGRKVTFGDLAIPEDSSLETKTLHSNFVRFTQESSDKVEIAKRFANLTKWMESSSIKM 453

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           +            LD    +    E+  + ++    + +   P   K+    +  +V + 
Sbjct: 454 RSNKGTATLTKIALDTCKQWA---EKTGWMNMINRAAAMSLGP--RKKDEEYSPEKVVLS 508

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE   V ++   +     K                                  
Sbjct: 509 TLHGSKGLEWNKVIIMSCNADQIPSKRSVG------------------------------ 538

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                +   EE  RLLYVG TRA  QL +  + + S
Sbjct: 539 -----EEAIEEERRLLYVGFTRAEKQLFVMWYGDPS 569


>gi|294654836|ref|XP_002770037.1| DEHA2A13530p [Debaryomyces hansenii CBS767]
 gi|199429186|emb|CAR65413.1| DEHA2A13530p [Debaryomyces hansenii]
          Length = 858

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 100/609 (16%), Positives = 200/609 (32%), Gaps = 89/609 (14%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL----LKKRDVSAWIRYKIDQEINHILI 182
             ++K          + N ++ + DL++N  +L    L+ + V         +    I++
Sbjct: 215 YKVSKEYIEALIMYLENNGMIRYHDLLVNALELMDLSLQPQAVGNMNLIPQLKNYKAIIV 274

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD       +++++ E    G       + L   GD  QSIY F G++P+ + + + 
Sbjct: 275 DEFQDIHPQLLSIVKAVIEYPTSGF-CKGDMKHLTIAGDPNQSIYEFLGSKPELIHKIQD 333

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDK-------VFSIPENAQGLSEDSTTTI 295
                    G + + + +  SFR T +IL  V +       +F   +  + +       I
Sbjct: 334 EIP------GGEVTQLSINESFRITPEILNAVTEICLKPAGLFDPAQELRSIRGHGHKPI 387

Query: 296 --RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA----------- 342
              H S++           +++ +     NP   +  +  +   +E S            
Sbjct: 388 ISMHISNKDEYAFIASEVTRLICESGGLLNPSDFAILTRSNKEIEEISKFLTETYNIKCN 447

Query: 343 --SILARRIAYTISNMIGTDTIFSNGKKRVI-QAKDILVLVRKRKDTPLITFLTRFLKND 399
             S  A  I   +  ++    + S G          I +L RK   +  ++ L      +
Sbjct: 448 RFSSSASWIKSKVHILLDILNVISKGPSSDFGLLCVISILDRKFGSSSRVSKLF-----N 502

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
                  N      ++   + ++    F+   + + + V + K         DI+KI   
Sbjct: 503 VSNKWKVNGGLETRENALEEYIIHELEFL-DIQVEENQVTVKKKKKSLHDITDIYKIPKY 561

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIH---ELIHIAQFCSPHDFFTLILGAKKGRQQ 516
            +E   +  ++    +      Q+  +  +    L  + +  S  +    +        +
Sbjct: 562 NNEILRLKTFMDSIRSVRRDLIQNTQESQNPTNILSSLLRVLSDSELLEYL--NSPELSK 619

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-ELEQYPPT------------IKR 563
             S    + ID+  ++ +      Q+   SL+      +EQ   T               
Sbjct: 620 SRSTKQPDSIDIEKDYKSLLKTYLQSFNKSLKYSYECYMEQNSLTKSEKSFVEYFLRSYN 679

Query: 564 AHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                 +   V + TVHTAKGLE PVVF+                               
Sbjct: 680 DEIPTMDREMVNLSTVHTAKGLEFPVVFIAG----------------------------- 710

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
            PQ+   ++    L+    +   +   RL YV  TRA + L I  +        S   + 
Sbjct: 711 APQNAKSSSFWDSLLLDRLEPHAQSKARLFYVACTRARNLLYIGTNKRFDTLSPSAFNSL 770

Query: 682 YDMVYDSFH 690
              + D   
Sbjct: 771 TPELPDMNS 779


>gi|218752276|ref|ZP_03531072.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis GM
           1503]
 gi|289760753|ref|ZP_06520131.1| exodeoxyribonuclease V beta chain [Mycobacterium tuberculosis GM
           1503]
 gi|289708259|gb|EFD72275.1| exodeoxyribonuclease V beta chain [Mycobacterium tuberculosis GM
           1503]
          Length = 547

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 66/453 (14%), Positives = 130/453 (28%), Gaps = 42/453 (9%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
              E  E + +        + S +   ++        T  +   ++ ++           
Sbjct: 83  PSGELVEHLLRGSDAERAQKRSRLRDALANFDAATIATTHEFCGSVLKSLGVAGDNAADV 142

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD----RFNTYKMFKST 123
            L             +       ++  D +    ++    + + D    +         +
Sbjct: 143 ELKESLTDLVTEIVDDRYLANFGRQETDPELTYAEALALALAVVDDPCAQLRPPDPEPGS 202

Query: 124 LAS--LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            A+  L  A  +    E  K +     F DL+I     L+  D  A  R ++ +    +L
Sbjct: 203 KAAVRLRFAAEVLEELERRKGRLRAQGFNDLLIRLATALEAADSPA--RDRMRERWRIVL 260

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QDT  +QW V+              S    L  +GD KQ+IY F G +    L+  
Sbjct: 261 VDEFQDTDPMQWRVLER----------AFSRHSALILIGDPKQAIYGFRGGDIHTYLK-- 308

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                    AG   +   L +++RS   ++  +  V               T   H   R
Sbjct: 309 --------AAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGTDAHHAGHR 360

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           +            +            +     ++L +     + A               
Sbjct: 361 LASAPRP--APFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADV--------AALLA 410

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             +    R + A DI V+V   KD        R    +  I  +      +    A KD 
Sbjct: 411 SGATFAGRPVVAADIAVIVEHHKDARAC----RNALAEAGIPAIYTGDTDVFASQAAKDW 466

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
           + L     + +          +  F  + + + 
Sbjct: 467 LCLLEAFDAPQRSGLVRAAACTMFFGETAESLA 499


>gi|294787441|ref|ZP_06752694.1| putative ATP-dependent DNA helicase (UvrD/REP) [Parascardovia
           denticolens F0305]
 gi|294484797|gb|EFG32432.1| putative ATP-dependent DNA helicase (UvrD/REP) [Parascardovia
           denticolens F0305]
          Length = 499

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 118/362 (32%), Gaps = 71/362 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           T  K +   YEE K  + V+DF D+++    +L+K    A    +I + I  + +DE QD
Sbjct: 180 TAMKAVMDAYEEEKVFHGVMDFNDILLLLCHVLEKEPDQA---ARIRKGIGWLTVDEYQD 236

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            S +Q  ++     +           R +  VGD  Q+IYSF GA    + R        
Sbjct: 237 VSPLQHRLMTLWLGE----------NRNVCVVGDAAQTIYSFAGATSYYLNRFDWEFAPL 286

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
             +       I L   +RST  I+   + +             ++           + G 
Sbjct: 287 TAD-------ISLNRDYRSTPTIVAQANALLEKSPLRDDYLHLASGR---------EPGR 330

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             L                           + SS    AR IA  I  ++ +        
Sbjct: 331 KVL-------------------------KTRYSSDVHEARGIAGKIKRLMASG------- 358

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD--LMALG 425
               +A DI VL+R    + L++ + +       I      R    D     D  L A G
Sbjct: 359 ---AKAGDIAVLMRINNQSRLLSSVFKEE----GIPFR-VRRDSGWDSQTSHDSLLNADG 410

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
                    +     L+ P           I    + T+   E  ++    G+++ +  +
Sbjct: 411 TVGQVTLSTIHASKGLEWPYVFIMGCSDGLIPYATNMTDQGLEEERRLLYVGVTRAEDFL 470

Query: 486 KY 487
           + 
Sbjct: 471 EI 472



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 47/154 (30%), Gaps = 36/154 (23%)

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
            I+     L+   + E+     ++       Q              +V + T+H +KGLE
Sbjct: 369 RINNQSRLLSSVFK-EEGIPFRVRRDSGWDSQTSHDSLLNADGTVGQVTLSTIHASKGLE 427

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            P VF++     +  +                                      +     
Sbjct: 428 WPYVFIMGCSDGLIPYATN-----------------------------------MTDQGL 452

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
           EE  RLLYVG+TRA D L I        E + + 
Sbjct: 453 EEERRLLYVGVTRAEDFLEISYSQGMRKEGEQDS 486


>gi|322805638|emb|CBZ03203.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog
           [Clostridium botulinum H04402 065]
          Length = 549

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 113/320 (35%), Gaps = 68/320 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +   LDF DLII  +DL +K  ++ +      ++   I IDE+QDTS I++ ++
Sbjct: 197 YDKKLYERHGLDFNDLIIKVHDLFQKDKITTY----WREKYKFIHIDEMQDTSEIEYNIV 252

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                +   GD  Q+IY + G+ P  +       +K          
Sbjct: 253 SKLF-----------RNNNIMLSGDYYQTIYEWRGSNPSIIF---DNYKKEFN-----PE 293

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I    ++RS+ +IL      F +    +G++E     I  ++                 
Sbjct: 294 FIVFDKNYRSS-EILLKASYEFLLNAFGKGVNEIYKEGIEPKA----------------- 335

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                       +   +D + +       A  I   I ++            +V +   +
Sbjct: 336 ----NIKGDLIEFKKAYDFMEE-------ATFIFNKIKSL------------KVEKFSRV 372

Query: 377 LVLVRKRKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +L R  +    ++   + L +      ++  +  D F       IKD++A  + I++  
Sbjct: 373 AILTRNNRINIALSEKFKILNSKLPKEDRVGFLLVDEFKFFRREEIKDVLAYLKLIVNDF 432

Query: 433 DDLSFVCMLKSPLFNFSEDD 452
           D  S   +LK       E  
Sbjct: 433 DSNSLKRILKKFGKGIGERT 452


>gi|261885007|ref|ZP_06009046.1| UvrD/REP helicase [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 313

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 29/172 (16%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            + + +   +EE K +    DF DL+I   + LKK    A +        + IL+DE QD
Sbjct: 134 EVYEDILREFEEQKSRFNYADFNDLLIKMRNELKK---GAKVF------YDEILVDEYQD 184

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q  +I S             + ++LF VGD  QSIY+F+GA    +    +     
Sbjct: 185 TNSLQGSLIDSF------------NAKSLFCVGDFDQSIYAFNGANIDIIGSFTQRY--- 229

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                +   +  L +++RS+A IL++ +KV +            +     +S
Sbjct: 230 -----KDAKVYSLNVNYRSSAKILSLANKVIAQNPRLYPKELTVSRIGNFKS 276


>gi|157412044|ref|YP_001481384.1| TrhI [Escherichia coli APEC O1]
 gi|99867069|gb|ABF67714.1| TrhI [Escherichia coli APEC O1]
          Length = 594

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 96/636 (15%), Positives = 177/636 (27%), Gaps = 139/636 (21%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
             A  LQ+    + ++          + ++    +      I      +  +  K     
Sbjct: 61  ALAAKLQKRLSKKDLDRVLVDTFHGLVKKQLDMIRWPGKMLIGPAQRSVIHRALKESGVT 120

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKY-------LNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +K  +           + +  ++         L   Y+   +K+ V D         + L
Sbjct: 121 MKFAEAEFVIDAIGREMDTDVISVRHNRQQIHLFNTYQALCQKDHVAD--------LNAL 172

Query: 161 KKRDVSAWIRYKIDQ-EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            K  V      K+   ++ H+++DEVQDT  IQ+  I   T           +      V
Sbjct: 173 SKFVVGQMHSGKMRTLDLTHLIVDEVQDTDSIQFSWIALHTR----------AGVYTSIV 222

Query: 220 GDEKQSIYSFH-GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           GD+ Q+IYSF      K   + ++  +          +I  L   FR   +IL V   + 
Sbjct: 223 GDDDQAIYSFRSSGGVKIFQQFEKHFR---------PNIFYLNTCFRCEPEILEVAGALI 273

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                       S              G V     V  +   Q                 
Sbjct: 274 GKNVYRYAKELRSA---------KKGGGKVTFRSYVDMEEQIQG---------------- 308

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                         I ++I  D                 +L R       +  L      
Sbjct: 309 --------------ILSLINQD------------PHGWAILSRNNAHLDELESLIEQ--- 339

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE---DDIFK 455
                V+        D     D+++L  F     D      +L   LF   E   D++  
Sbjct: 340 ----PVIRYGGKSFWDEKETSDVLSLMAFFRQSNDPRLMKRVLA--LFGEQESVLDEVAL 393

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
               R  T       +  +    +   + +++  E     +        T  + +   + 
Sbjct: 394 SMRGRKVTFGDLAIPEDSSLETKTLHSNFVRFTQESTDKVEIAKRFANLTKWMESSSIKM 453

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           +            LD    +    E+  + ++    + +   P   K+    +  +V + 
Sbjct: 454 RSNKGTATLTKIALDTCKQWA---EKTGWMNMINRAAAMSLGP--RKKDEEYSPEKVVLS 508

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE   V ++   +     K                                  
Sbjct: 509 TLHGSKGLEWNKVIIMSCNADQIPSKRSVG------------------------------ 538

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                +   EE  RLLYVG TRA  QL +  + + S
Sbjct: 539 -----EEAIEEERRLLYVGFTRAEKQLFVMWYGDPS 569


>gi|325067284|ref|ZP_08125957.1| UvrD/REP helicase [Actinomyces oris K20]
          Length = 171

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 21/157 (13%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + + YEEAK +  V+DFED+++ T  +L        +  ++  +  H ++DE QD S
Sbjct: 32  VAQVLSLYEEAKSERGVIDFEDVLLLTIGILLD---REDVAAQVRGQYKHFVVDEYQDVS 88

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++                 R L  VGD  Q+IYSF GA P  +       +    
Sbjct: 89  PLQQRLLDLWLG----------RRRQLCVVGDVSQTIYSFTGATPAFLTGFATRYE---- 134

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
                   + L   +RST  ++++ ++V S      G
Sbjct: 135 ----GARTVRLSRDYRSTPQVVSLANRVLSRSRRGGG 167


>gi|319425164|gb|ADV53238.1| UvrD/REP helicase [Shewanella putrefaciens 200]
          Length = 946

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 28/226 (12%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
           +  +    ++  S  +S    ++  P K+++ ++      D+  + +   +      +  
Sbjct: 577 KLLKFDDDQDILSAQASLNAIERLIPSKSMLAKQYL--CDDIARRCQNIFNHMANFDEPI 634

Query: 115 NTYKMFKSTLASLTLAKYLNA---HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
               + K     +     ++     Y + K+     DF DL++   + LK  D   W+  
Sbjct: 635 VERSINKVAPDLVDYVDEISELLNAYNKYKEGRYR-DFNDLLVQLRECLKNDDFCEWVLT 693

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +      H++IDE+QDT++IQW++I+ L +               F VGD  QS+Y F G
Sbjct: 694 QT----KHLIIDEIQDTNIIQWDIIKKLYDH----------GIHFFCVGDPAQSMYGFRG 739

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           A+ + + +  +  + R           +L  + RST  ++ + +K+
Sbjct: 740 AKHEYLDKFTKTFKNR--------KRFQLAKNRRSTKPLVQLANKI 777


>gi|88797155|ref|ZP_01112745.1| Superfamily I DNA and RNA helicase [Reinekea sp. MED297]
 gi|88780024|gb|EAR11209.1| Superfamily I DNA and RNA helicase [Reinekea sp. MED297]
          Length = 749

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 81/563 (14%), Positives = 166/563 (29%), Gaps = 117/563 (20%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   +E+ +       + DLI       ++      +  +    +  I++DE QD
Sbjct: 186 RFFIEVFHRFEDWRSDQRRFTYSDLICEPVMRFEREPH---LARQFGGHMAEIIVDEYQD 242

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q  ++  L  D             L  VGD  Q+IY F G+ P+      +   +R
Sbjct: 243 INPVQQRLLEVLQGD----------RAQLMIVGDPDQTIYEFRGSRPQL---LSQQFAER 289

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                Q      L  +FR    +  + ++V S           +    R +        T
Sbjct: 290 F----QPVVDYHLSHTFRFGHALSLLANQVISGN--------YAHDDARTQCVSDATAST 337

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +L   V              W                                      
Sbjct: 338 TELVRLVSDDSAQAAFDCITRWQQA----------------------------------- 362

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  DI V+ R   ++  +  +      ++ +    +  F + +   ++ L  L + 
Sbjct: 363 ---YSLDDIAVINRLWANSARLELML----LEHGVHYQTDQPFSVLERHELRPLRVLLQL 415

Query: 428 ILSQE-------DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY-EYIQKFANCGIS 479
              Q           ++  +L  P     +  I ++      T T + + ++      +S
Sbjct: 416 ADGQGIQWSPAIRRQAWQSLLTQPYLKIRKALIDQLIRTLTPTTTQWGQALRNAVPENLS 475

Query: 480 KFQ-HVIKYIHELIHIAQFCSPHD---FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
           ++Q   +      I  A+             + G         + F    +D     +  
Sbjct: 476 RYQSEALFERARWIEKAERGQGAAYAVLQGWVQGTDYYSAMQENAFSASAVDDQKATVQA 535

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            L   ++   +L +   +L+     ++RA       V I ++H +KG E P V + +   
Sbjct: 536 FLSFVRSHRWALSDGAHQLQTL---VERAREQTAGGVLITSIHKSKGREWPCVIIPELNG 592

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
           Q + ++   +M +  S                                     RLLYV M
Sbjct: 593 QFYPYQPESEMSLPTS--------------------------------LASERRLLYVAM 620

Query: 656 TRASDQLIICKHSNTSNEKKSNQ 678
           TRA  +L +   +   +   S+ 
Sbjct: 621 TRARHRLALIVPTPGGSVPASSF 643


>gi|48478317|ref|YP_024023.1| ATP-dependent DNA helicase [Picrophilus torridus DSM 9790]
 gi|48430965|gb|AAT43830.1| ATP-dependent DNA helicase [Picrophilus torridus DSM 9790]
          Length = 852

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 116/847 (13%), Positives = 238/847 (28%), Gaps = 198/847 (23%)

Query: 85  ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM-FKSTLASLTLAKYLNAHYEEAKKK 143
             +       ++K  L K ++  +   ++     +  +  +  L    Y+  +YEE K  
Sbjct: 131 FVKNFGIGINEIKTHLDKIRENLVYYYNKKRIGNITLEEEIKMLDYFIYVYNYYEENK-- 188

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              +D+ D++                     +   ++ +DE+QD +++++++   L+ D 
Sbjct: 189 -NGIDYTDILNIFLKHFNN------------KIYKYVFVDELQDVNILEYKIA-LLSGD- 233

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR--EKRINQKRATNAGQKFSIIELP 261
                       +FAVGD KQSI+ F G   K      +     KR            L 
Sbjct: 234 -----------KIFAVGDRKQSIFGFQGGSLKIFSDIIKSDDFDKRL-----------LS 271

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS   IL       S  +  +                           ++ +    +
Sbjct: 272 KNYRSVNSILKYAGAYMSGIDLYRE--------------------------ELNNFSSDR 305

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
            +          D              I   I N+                     ++VR
Sbjct: 306 GDGDLIDIIETEDYSS-----------IIDIIKNL----------------DGTTGIIVR 338

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
             +    ++ +     +D  I     D        A ++++   + I    DD  ++   
Sbjct: 339 TNEQLFSVSRIL----DDAGIKY-SCDGISFQAGEAKREIITFLKGI--FYDDPEYI--- 388

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
                      +F I    +  E  Y   +   N              +L     F    
Sbjct: 389 --------IKALFTIYGSSNLKEAFYISEKYRENPESFNIYDFSNTTIKLRTDLTFSGIE 440

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
             F   +     R        +     L  F +       +   + ++    L     + 
Sbjct: 441 KIFRDHIIPVSLR-----HGADYYHAALSIFRSLKDFFTLDEMPTRKDFFDYLSLCDVSS 495

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                +N   + I TVH+AKGL    V  +                      +       
Sbjct: 496 GT---SNGGNIYITTVHSAKGLSYDNVIYI---------------------PEKKRTYDK 531

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                S + + +     + +  + E  R+ +V  TRA  +L I  +   S+    +    
Sbjct: 532 FIDVISFSIVKACTDYDVSEDLELEDIRIDFVAFTRARYRLFILCNPGYSSMYFIDGLCR 591

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              + +              N + ++ W+      +             K+ +    + K
Sbjct: 592 LRSINNHNE----------INVLGRESWLRSLIYDYF-----------NKKNILSYSLVK 630

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
               P +        LN S                      GL  H + ++++       
Sbjct: 631 YTERPFEFLKYFILNLNFSGP----------------AAEYGLNAHTIAELMYRDE---- 670

Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
                     N      K     + +I   LE   +    +  S   ++++   +    D
Sbjct: 671 -------IEYNDLNINDKTIYKNVQAIKNELEKLNLRQVDAEKSII-ININDMFDDLNYD 722

Query: 862 IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS-- 919
           +   G+ID I  S     I +YKT  +     E     H+ QL+ Y+ +   +Y      
Sbjct: 723 LKFYGKIDAIFSSGSRYLIIDYKTDKNRNNANE-----HMVQLAAYKMLFGRAYNISEDL 777

Query: 920 LVCLLIY 926
           +   + Y
Sbjct: 778 IDTAIAY 784


>gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
 gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans
           P7]
          Length = 862

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 118/362 (32%), Gaps = 66/362 (18%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               Y      N  LDF DLII   +L    +    +         +I IDEVQDTS ++
Sbjct: 195 FVNSYNSLLYHNHGLDFADLIIKAKELFNNPE----VVNSYINRYKYINIDEVQDTSTLE 250

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +I  L                +   GD+ Q+IY + G+EP       RI +    N  
Sbjct: 251 YSIIEKLF-----------KGNNVLICGDKFQTIYGWRGSEPN------RIFKSFKENYD 293

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                I   +++R+T ++           ENA  +    T     +         + L  
Sbjct: 294 P--KEIIFTINYRATKNLTEAS---LKYLENAFPIDMKDTYKEGIQCESKDAGDKISLKI 348

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
               + +                          AR I   + N+          +++   
Sbjct: 349 ADNLREE--------------------------ARFIYNEVINL----------ERKNGS 372

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDY--KISVVGNDRFILTDHLAIKDLMALGRFILS 430
           A +I VL R  +    ++   + +          +  D+F       IKD++A  + I +
Sbjct: 373 ADNICVLTRDNRYNINLSEQLKSIMKPEAVNFEFILVDQFKFFRRQEIKDVIAFLKLIAN 432

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           + D +S   ++K       +     I     +    ++ ++I         K+  +I   
Sbjct: 433 RYDSISLKRIVKRLPTGVGDKTFEAIESEKYKKLGISLSDFIDDNVFKYGDKYSLLIDEF 492

Query: 489 HE 490
            +
Sbjct: 493 QK 494



 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 41/223 (18%)

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
              +  +  F ++   ++ L   A+   PHD    I+     +  +    G E I+ L +
Sbjct: 672 ACMSKYLKAFNNIADKLNNLFKEAEGSRPHDIVNKIVNGFSLKTLYTGDEGKEKIERLRD 731

Query: 532 FLNFTLRNEQNSYSSLQELIS-----ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           F       +  + +S   L+       L          +      + I+TVH AKGLE  
Sbjct: 732 FYVLLRELDNKNKNSRDSLLDIIRITSLSNGELESLVINRTKKPRIPIITVHQAKGLEYE 791

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VF+       F                                        +K +  EE
Sbjct: 792 TVFISGAQQNTFPS-----------------------------------YMSIKSNNLEE 816

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
             R  YV MTRA  QL I  +++   ++ +      D++  S+
Sbjct: 817 EKRTFYVAMTRAKKQLYITCNTDGRYKRTTKSEFI-DLIPWSY 858


>gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
 gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909]
          Length = 849

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/416 (13%), Positives = 129/416 (31%), Gaps = 70/416 (16%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           Q+    + +I +        +     +S+           +     +         +L  
Sbjct: 142 QELKLYRLMIPKAYRDDYKRVVASFHQSEKAQKLQYSNRRSDAGAYTLGFLAQYGCWLYE 201

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+    +N ++DF DLI+       +      I  +  +    +++DEVQDTS  ++++
Sbjct: 202 TYQTYLLENHLVDFNDLIVYA----SELLEDEEILERWRERFKVVMVDEVQDTSQFEYQL 257

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL-REKRINQKRATNAGQK 254
           I  L              +     GD  Q+IY +  + P+ +L +               
Sbjct: 258 IEKLA-----------KGKQFSVFGDFNQTIYEWRDSNPELILSQIMTTF---------N 297

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              +EL L++RS   ++ +        + A+ ++                     L  +V
Sbjct: 298 PKRLELSLNYRSLKRLVQMSANYLENAKKARLINPR-------------------LSPRV 338

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
           +   + +   +   +        +  +       I   +               R+    
Sbjct: 339 IEAANEEVGGRPVFY--------EAQTQQEEMDFIIDHLK------------HYRLDDLA 378

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           + ++L R  K    ++   R    +  I     +   L     +KDL+A  +F L+  D 
Sbjct: 379 NTVILTRTNKQNIQVSNFLR----NVGIPCYLIEDLSLFRRKVVKDLLAFVKFQLNPFDH 434

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
           LS   +L  PL            T R    +    +         +++     + +
Sbjct: 435 LSLERLL--PLICPEVSPELFNQTYRQRYVSYGMRMIDLFQEAAYEYEEPYGLLKK 488



 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 68/214 (31%), Gaps = 40/214 (18%)

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
           T +E  +K            I+ + E+    +   PH     ++ A +   +   +   E
Sbjct: 661 THHENRKKVMKFYEPHLWGAIQRLKEIQDCFETQPPHVAMKGLIDAFECEDEAHKQSIIE 720

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT--IKRAHSANHNEVRIMTVHTAKG 582
           +++ +    +    +      +L+  I  L     +           N++ I+TVH +KG
Sbjct: 721 LLNYIGATYHRLH-HTNPHQPNLEIWIQMLNLMALSSSELDRVMKEENKLAIITVHQSKG 779

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   V +      +F                                            
Sbjct: 780 LEFDHVIIPFMSQGMFPLDFDGI------------------------------------- 802

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
            QEE  RL YV MTRA   L++ +H   ++  + 
Sbjct: 803 NQEEECRLFYVAMTRAKQSLLLTRHMKETSSSRR 836


>gi|295099324|emb|CBK88413.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
           helicase and exonuclease domains) [Eubacterium
           cylindroides T2-87]
          Length = 492

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 22/163 (13%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +      TL+      + + KK+  ++DF D+      LLK+  +   +R K       I
Sbjct: 304 ERINTFCTLSLLTMDIFAKKKKEMEIIDFTDMEHFAYKLLKQPMIQEEVRNKYQM----I 359

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+ +Q  +I+                  +F VGD KQSIY F  A P+ +   
Sbjct: 360 LVDEFQDTNELQENIIQCFARKD-----------NVFRVGDIKQSIYGFRQARPEIM--- 405

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
               Q       +   +I L  ++RS   I+   ++ +    N
Sbjct: 406 ----QGHMDKEDENSCLIVLDENYRSNQSIVEFNNEFYDHIMN 444


>gi|297192223|ref|ZP_06909621.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151259|gb|EDY67267.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 348

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 87/270 (32%), Gaps = 32/270 (11%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  + +   L      Q +  + Y    +       L  A+ L+  S  +       
Sbjct: 105 AAVELRDRMALRLGGARGPQATTFHSYCYALVRAHQDADL-FAEPLRLLSGPEQDVTVRE 163

Query: 68  LLSSFF----LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           LL+       +      +  + T+    +   +      ++   + +          ++ 
Sbjct: 164 LLAGQIGLPGVRWPDELRACLTTRGFADEVRAVL-----ARSRELGLGPDSLARFAARTG 218

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 A    A Y +      VLD+ +L+     LL                 + + +D
Sbjct: 219 RPDWGAAASFLAEYLDVLDLQGVLDYAELVHRAV-LLADDVALP--------GYDAVFVD 269

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT   Q  ++R+L              RTL A GD  QSIY+F GA+   +L     
Sbjct: 270 EYQDTDPAQVRLLRALAG----------GGRTLVAFGDPDQSIYAFRGADVNGILDFPEA 319

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTV 273
             +     G    +  L  S RS A +L  
Sbjct: 320 FPR---ADGGPAGVAVLTTSRRSGAALLAA 346


>gi|153939167|ref|YP_001390679.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
 gi|152935063|gb|ABS40561.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum F str. Langeland]
          Length = 855

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 113/320 (35%), Gaps = 68/320 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +   LDF DLII  +DL +K  ++ +      ++   I IDE+QDTS I++ ++
Sbjct: 197 YDKKLYERHGLDFNDLIIKVHDLFQKDKITTY----WREKYKFIHIDEMQDTSEIEYNIV 252

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                +   GD  Q+IY + G+ P  +       +K          
Sbjct: 253 SKLF-----------RNNNIMLSGDYYQTIYEWRGSNPSIIF---DNYKKEFN-----PE 293

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I    ++RS+ +IL      F +    +G++E     I  ++                 
Sbjct: 294 FIVFDKNYRSS-EILLKASYEFLLNAFGKGVNEIYKEGIEPKA----------------- 335

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                       +   +D + +       A  I   I ++            +V +   +
Sbjct: 336 ----NIKGDLIEFKKAYDFMEE-------ATFIFNKIKSL------------KVEKLSRV 372

Query: 377 LVLVRKRKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +L R  +    ++   + L +      ++  +  D F       IKD++A  + I++  
Sbjct: 373 AILTRNNRINIALSEKFKILNSKLPKEDRVGFLLVDEFKFFRREEIKDVLAYLKLIVNDF 432

Query: 433 DDLSFVCMLKSPLFNFSEDD 452
           D  S   +LK       E  
Sbjct: 433 DSNSLKRILKKFGKGIGERT 452



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 70/205 (34%), Gaps = 39/205 (19%)

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
             I KF+ + + I  L  ++   +P D    I+   K ++ +  ++    I+ L EF   
Sbjct: 674 KYIKKFEPIYEEITNLKKLSYIKNPKDIIGEIVNKTKIKEIYKDQYIK--INNLREFFVI 731

Query: 536 TLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               E    SS   LI  L       +        +  V I+TVH AKG E   VFL   
Sbjct: 732 AKEIENKEISSRDNLIELLKITSLSNSELDRMLTKYPRVPIITVHQAKGAEFDYVFLAGL 791

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            + +F +                                      +K+  + E  RL YV
Sbjct: 792 QNNIFPN-----------------------------------YMAVKEGNEIEERRLFYV 816

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ 678
            MTRA   L +       N +K+  
Sbjct: 817 AMTRAKKYLYLSFSEYEHNRRKAKS 841


>gi|226948601|ref|YP_002803692.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844461|gb|ACO87127.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A2 str. Kyoto]
          Length = 855

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/320 (18%), Positives = 113/320 (35%), Gaps = 68/320 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +   LDF DLII  +DL +K  ++ +      ++   I IDE+QDTS I++ ++
Sbjct: 197 YDKKLYERHGLDFNDLIIKVHDLFQKDKITTY----WREKYKFIHIDEMQDTSEIEYNIV 252

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                +   GD  Q+IY + G+ P  +       +K          
Sbjct: 253 SKLF-----------RNNNIMLSGDYYQTIYEWRGSNPTIIF---DNYKKEFN-----PE 293

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I    ++RS+ +IL      F +    +G++E     I  ++                 
Sbjct: 294 FIVFDKNYRSS-EILLKASYEFLLNAFGKGVNEIYKEGIEPKA----------------- 335

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                       +   +D + +       A  I   I ++            +V +   +
Sbjct: 336 ----NIKGDLIEFKKAYDFMEE-------ATFIFNKIKSL------------KVEKLSRV 372

Query: 377 LVLVRKRKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +L R  +    ++   + L +      ++  +  D F       IKD++A  + I++  
Sbjct: 373 AILTRNNRINIALSEKFKILNSKLPKEERVGFLLVDEFKFFRREEIKDVLAYLKLIVNDF 432

Query: 433 DDLSFVCMLKSPLFNFSEDD 452
           D  S   +LK       E  
Sbjct: 433 DSNSLKRILKKFGKGIGERT 452



 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 70/205 (34%), Gaps = 39/205 (19%)

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
             I KF+ + + I  L  ++   +P D    I+   K ++ +  ++    I+ L EF   
Sbjct: 674 KYIKKFEPIYEEITNLKKLSYIKNPKDIIGEIVNKTKIKEIYKDQYIK--INNLREFFVI 731

Query: 536 TLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               E    SS   LI  L       +        +  V I+TVH AKG E   VFL   
Sbjct: 732 AKEIENKEISSRDNLIELLKITSLSNSELDRMLTKYPRVPIITVHQAKGAEFDYVFLAGL 791

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            + +F +                                      +K+  + E  RL YV
Sbjct: 792 QNNIFPN-----------------------------------YMAVKEGNEIEERRLFYV 816

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ 678
            MTRA   L +       N +K+  
Sbjct: 817 AMTRAKKYLYLSFSEYEHNRRKAKS 841


>gi|320324203|gb|EFW80283.1| helicase, putative [Pseudomonas syringae pv. glycinea str. B076]
 gi|320328635|gb|EFW84636.1| helicase, putative [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330882359|gb|EGH16508.1| helicase, putative [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 560

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 96/675 (14%), Positives = 187/675 (27%), Gaps = 150/675 (22%)

Query: 29  SDINKYVSLSMETGNPTILKKAQT-LQQASQTQCIEERFSLLSSFFLTQKFTPQ--KNII 85
                   L++E      +K     L   +     +       + FL +  + +  K I+
Sbjct: 5   DRWMHSPGLTLEANAWHAIKDTDHSLVLLAGPGAGKTEILAQRADFLLRTGSCRYPKRIL 64

Query: 86  TQEIN-KKSPDLKEKLK-----KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
                   S +LKE++      +    F          ++       LT    L   Y  
Sbjct: 65  AISFKSDASRNLKERVSLRCGWEQATRFDSFTFHSFANRIVSRFRVLLTDPDALKPDYSI 124

Query: 140 AKKK--NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            K+      + F  L+     +L+   ++   R  I Q   H+ +DE QD +  Q+++I+
Sbjct: 125 GKEAIPGEQITFMQLLPIALKILRTSKIA---RNTIRQTYAHVFLDEFQDCTSDQYQMIK 181

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L E          +P  L AVGD KQ+I  + GA              R          
Sbjct: 182 LLFE---------GTPALLTAVGDTKQTIMGWAGALDGIFKLYADDFAAR---------P 223

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           + L  +FRS   +L + + V    + +  +                              
Sbjct: 224 LRLYRNFRSKPRLLRMQNSVIRDIDPSALMP----------------------------- 254

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
              +    ++      +     + A  LA  I   I                 ++  +I 
Sbjct: 255 --DEMIGGEDGVIRAGNFSSSAAEAVSLANLIHKWIE-------------VEDLRPAEIA 299

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLS 436
           VL R   +  L             I     +    L    A + ++     + ++  + +
Sbjct: 300 VLFR--GEIDLYGEELMEQLTLRNIPFRNENTLQDLLKEPAARLMIDYLTCLYTRGSNKA 357

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-- 494
           +  ++            F        T   +E   K     +           +   +  
Sbjct: 358 WSRLM-------DLFAPFDDEWNSDRTHKSFELCYKQHQKKVKAAAKTTTPYADWWELAK 410

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           A F          L +    ++ +     +  D +   L       Q     L+ L    
Sbjct: 411 AFFDILGHAVMTTLSSDYETKRRLKEIIRDTRDHISTLL-------QTEPDLLRALARF- 462

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                       ++ N VR +++H +KGLE   V +     Q F  K             
Sbjct: 463 ------------SDDNAVRFLSMHKSKGLEFHSVIVFGVEQQSFRGK------------- 497

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                          E  ++ +V ++RA D+LI+   +      
Sbjct: 498 -----------------------------IGEERQVFFVAVSRAKDRLILTTANQRQRPA 528

Query: 675 KSNQRTWYDMVYDSF 689
             +    +D+     
Sbjct: 529 GISASKRWDVARQPH 543


>gi|47104069|ref|YP_015498.1| putative helicase [Photobacterium profundum SS9]
 gi|46911633|emb|CAG17982.1| putative helicase[Photobacterium profundum SS9]
          Length = 572

 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 82/561 (14%), Positives = 170/561 (30%), Gaps = 123/561 (21%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              L F+ L I    ++      + +   I     ++ IDE QD +  Q++ ++S+    
Sbjct: 133 RDKLTFDQLTITALKIVNSS---STLMSSIRATYKYVFIDEFQDLNGHQYDFVKSIF--- 186

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                   S   +  VGD KQ++  F  A P   ++ K+  +              +  +
Sbjct: 187 ------CGSQSVVTVVGDTKQAVMKFANALPDGFIKFKQDFKADLK---------IIYTN 231

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           FR+  ++   +D +                               + W       +S  +
Sbjct: 232 FRAAPELKQFIDCI-----------------------------GNEWWPINTESVESNID 262

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
               +      SL   +      ++++  I   I  D          I+ K+I +L R  
Sbjct: 263 S--VALDKGDYSLLNFNDEEHEVKQLSLKIKKWISED---------GIKPKEIAILFRIN 311

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            +      L   L +   +S+  ++          K L++L   +    D  ++ C+  S
Sbjct: 312 TNNNYSKNLNIALLDLGVLSINESNIQDYLSEPLGKVLVSLLCLLTRPRDIKAWECLRDS 371

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            L+  S + +        E   + + I      G    +     +   I I       +F
Sbjct: 372 YLYCSSSNSL----HNDFELTRILKLIGDTPFYGDGDAKTFDSILDVTIEIMN-----EF 422

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           F   L     + +  +        VL+E        E  + SS             +   
Sbjct: 423 FYENLKKTWTQYRQGTLMDETFHGVLEELK------EARNISS-----------SWSGAV 465

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
              +    VR+MT+H +KGLE   V L+                                
Sbjct: 466 DLISGVGAVRMMTIHKSKGLEFEAVVLLGLED---------------------------- 497

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                    S     + +   +E    ++V ++RA  +L+I    +  +   S       
Sbjct: 498 --------YSYFRYGMTQKKLDEERSTVFVALSRAKSKLLISSAMSRKHTGPSKFMHVNS 549

Query: 684 MVYDSFHNDERVKKIKLTNSI 704
           ++ D         ++   +++
Sbjct: 550 IINDLTKFGMNRSRVDKLDTL 570


>gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1]
 gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1]
          Length = 849

 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/416 (13%), Positives = 128/416 (30%), Gaps = 70/416 (16%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           Q+    + +I +        +     +S+           +     +         +L  
Sbjct: 142 QELKLYRLMIPKAYRDDYKRVVASFHQSEKAQKLQYSNRRSDAGAYTLGFLAQYGCWLYE 201

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+    +N ++DF DLI+       +      I  +       +++DEVQDTS  ++++
Sbjct: 202 TYQTYLLENHLVDFNDLIVYA----SELLEDEEILERWRGRFKVVMVDEVQDTSQFEYQL 257

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL-REKRINQKRATNAGQK 254
           I  L              +     GD  Q+IY +  + P+ +L +               
Sbjct: 258 IEKLA-----------KGKQFSVFGDFNQTIYEWRDSNPELILSQIMTTF---------N 297

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              +EL L++RS   ++ +        + A+ ++                     L  +V
Sbjct: 298 PKRLELSLNYRSLKRLVQMSANYLENAKKARLINPR-------------------LSPRV 338

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
           +   + +   +   +        +  +       I   +               R+    
Sbjct: 339 IEAANEEVGGRPVFY--------EAQTQQEEMDFIIDHLK------------HYRLDDLA 378

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           + ++L R  K    ++   R    +  I     +   L     +KDL+A  +F L+  D 
Sbjct: 379 NTVILTRTNKQNIQVSNFLR----NVGIPCYLIEDLSLFRRKVVKDLLAFVKFQLNPFDH 434

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
           LS   +L  PL            T R    +    +         +++     + +
Sbjct: 435 LSLERLL--PLICPEVSPELFNQTYRQRYVSYGMRMIDLFQEAAYEYEEPYGLLKK 488



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 40/214 (18%)

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
           T +E  +K            I+ + E+    +   PH     ++ A +   +   +   E
Sbjct: 661 THHENRKKVMKFYEPHLWGAIQRLKEIQDCFETQPPHVAMKGLIDAFECEDEAHKQSIIE 720

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT--IKRAHSANHNEVRIMTVHTAKG 582
           +++ ++   +    +      +L+  I  L     +           N++ I+TVH +KG
Sbjct: 721 LLNYIEATYHRLH-HTNPHQPNLEIWIQMLNLMALSSSELDRVMKEENKLAIITVHQSKG 779

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   V +      +F                                            
Sbjct: 780 LEFDHVIIPFMSQGMFPLDFDGI------------------------------------- 802

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
            QEE  RL YV MTRA   L++ +H   ++  + 
Sbjct: 803 NQEEECRLFYVAMTRAKQSLLLTRHMKETSSSRR 836


>gi|262403764|ref|ZP_06080322.1| DNA helicase IV [Vibrio sp. RC586]
 gi|262350268|gb|EEY99403.1| DNA helicase IV [Vibrio sp. RC586]
          Length = 687

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 92/248 (37%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  F 
Sbjct: 329 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQLGLSKKELQERLVDHDDFP 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K+   +DF  +I    + ++K         K       I+
Sbjct: 389 RLNSELSLCWPCYQAWQQMLKEQNHIDFNIMITRATEYVEK--------GKFRSPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L +        +     LFAVGD+ QSIY F G++        
Sbjct: 441 VDEYQDISPQRLRLLQALCD-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 493

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               +         ++  L  ++R    I  V ++           + +S  T + +S  
Sbjct: 494 ARFPRS--------TVHHLDTTYRFNDQIGAVANRFIQQNPYQLPKTLNSFKTQKQKSVV 545

Query: 302 IGQVGTVQ 309
           +    +V+
Sbjct: 546 LASNNSVE 553



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/379 (11%), Positives = 98/379 (25%), Gaps = 46/379 (12%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L        L   +   +  +          ++R++   D   L  +   
Sbjct: 337 PIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQLGLSKKELQERLVDHDDFPRLNSELSL 396

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMAL-------GRFIL 429
             P      + LK    I             ++           +           R + 
Sbjct: 397 CWPCYQAWQQMLKEQNHIDFNIMITRATEYVEKGKFRSPWKFIMVDEYQDISPQRLRLLQ 456

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-CGISKFQHVIKYI 488
           +  D                   I++      +  T +      +    +         I
Sbjct: 457 ALCDQNQGQ--CNLFAVGDDWQSIYQFAGSDVDLTTGFAARFPRSTVHHLDTTYRFNDQI 514

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
             + +     +P+     +   K  +Q+ +    N  ++ +   L+   R      + L 
Sbjct: 515 GAVANRFIQQNPYQLPKTLNSFKTQKQKSVVLASNNSVEKI---LDEVNRATNKLKTVLL 571

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              +   +        +     ++  MT H +KG E+  V ++      F  +       
Sbjct: 572 LGRNHYHKPEFLKDWQNRYLSLKIDFMTCHASKGKEADFVIILSVDDGQFPARVKALHLD 631

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                 D                              E  RL YV +TRA +++ +  + 
Sbjct: 632 SALSQGDDDF------------------------AYAEERRLFYVALTRAKEKVWVTYNG 667

Query: 669 NTSNEKKSNQRTWYDMVYD 687
           N S+  +      Y +V  
Sbjct: 668 NGSSFVQELLNDDYPVVKQ 686


>gi|71652927|ref|XP_815111.1| ATP-dependent DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70880140|gb|EAN93260.1| ATP-dependent DNA helicase, putative [Trypanosoma cruzi]
          Length = 834

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/481 (14%), Positives = 139/481 (28%), Gaps = 107/481 (22%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-----AKYLNAHYEEAK 141
           +E+     +      K  +  + + +  N  K  K   A   +     A YL   Y+   
Sbjct: 144 RELASAVVEAYAVHHKGLEAVLALVEYVNKAKTKKDMRAGTEIDPSRQAAYLFRFYQAML 203

Query: 142 -KKNCVLDFEDLIINTNDLLKK-----------------------------RDVSAWIRY 171
            +++  +DF DL     + L+                                + + +  
Sbjct: 204 HEQHNAVDFGDLEQMFLETLRPVGRQEQPSEEGVEGNGGSNSNSLMSVVPPPRLPSPVAL 263

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           ++  +  HI++DE QD + +Q E +  L  D             +  VGD  Q IY++ G
Sbjct: 264 QLRAQYTHIVVDEFQDLNEVQLECLALLAGD----------TCRVTCVGDPNQCIYTWRG 313

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A      R +    +          I+ L  ++RS+ +I++ V+ V              
Sbjct: 314 ATTNSFERWRSRFPQ--------TKIVTLGTNYRSSEEIVSAVNAV-------------- 351

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
            + I  +S R      + L                 +W                   +  
Sbjct: 352 -SQISQQSFRGECGRRIILIRC------------PHAWEQMS--------------LLPR 384

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +  ++ T       + R ++  DI +L R R+    +           +I V       
Sbjct: 385 VVEELLRT-------RDRGLKYSDIAILCRTRRTVRDVVTALE----REQIPVCELRPSR 433

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
                 ++ +++  R  +    +L   C+++    +FS     K                
Sbjct: 434 PNSKALVRAMLSYLRLCVHPHSNLDVECVIRDAPNHFSAAAATKFIFAMQAECLQRRREL 493

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
             A            Y   L  +             L   K +Q+F+  F        D 
Sbjct: 494 STAKLQCEDSHATYSYYTILRELVHNG--FAHVHERLRTTKPQQKFLRNFIEVTTAAHDA 551

Query: 532 F 532
            
Sbjct: 552 L 552


>gi|229137929|ref|ZP_04266528.1| ATP-dependent nuclease subunit A [Bacillus cereus BDRD-ST26]
 gi|228645586|gb|EEL01819.1| ATP-dependent nuclease subunit A [Bacillus cereus BDRD-ST26]
          Length = 235

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 24/192 (12%)

Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                         RG  +H ++Q +     + E   +  I     K    +   E +  
Sbjct: 46  RPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQIAGMVNKELLTFEQAE-EIA 104

Query: 825 LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCP----------KKDIIISGRIDQISI 873
           +  +    ++ +    ++  S   EV  +  +              + I++ G ID +  
Sbjct: 105 IEKVISFFDSDLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGQSGESILVQGVIDCMIE 164

Query: 874 SQQNIFIFEYKTHHHV---PQEIEHIP----YTHIAQLSIYEKILKDSYPNKSLV-CLLI 925
            +  I + ++KT       P   +         +  QLS+Y K L+ S     +    L 
Sbjct: 165 EEDGITLIDFKTDTIEGKFPGGFDQAKPILEERYKVQLSLYAKALEKSL-QHPVKEKCLY 223

Query: 926 YVSEPKVFIIPQ 937
           +     V  + +
Sbjct: 224 FFDGNHVIKVEE 235


>gi|294791407|ref|ZP_06756564.1| putative ATP-dependent DNA helicase (UvrD/REP) [Scardovia inopinata
           F0304]
 gi|294457878|gb|EFG26232.1| putative ATP-dependent DNA helicase (UvrD/REP) [Scardovia inopinata
           F0304]
          Length = 525

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 115/368 (31%), Gaps = 76/368 (20%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK--KSQ 104
              A T   A+  Q       L  S F       +  +          D  ++L+    Q
Sbjct: 114 QVHAATFHSAALQQLRSVWDDLSESPFPQVTDNAKDLVFRALARSTGRDSYQELEVQDVQ 173

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLA----------KYLNAHYEEAKKKNCVLDFEDLII 154
            E    +        +      L             K +   YEE K     +DF D+++
Sbjct: 174 AEIDWAKVGLIAPSDYGRACRLLGRVPPLGMDCIQMKSVMEAYEEEKAYRGQIDFNDILL 233

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               +L +   SA    +I   I+ + +DE QD S +Q  +++   +D           R
Sbjct: 234 LVCHILDEDSSSA---RQIRSHIDSLTVDEYQDVSPLQHRLVQLWLKD----------NR 280

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  VGD  Q+IYSF GA    ++   R             + I+L   +RST +I+   
Sbjct: 281 NICVVGDPAQTIYSFAGATSYYLINFSREFS-------PVTADIQLATDYRSTRNIVKEA 333

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +K+                                 +  + S  D+     +  ++   +
Sbjct: 334 NKILKPSPVR------------------------DDYLFLESARDTGRRISKRMYSCDDE 369

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                         +   I  +I              +A+DI VL+R      ++    +
Sbjct: 370 ES----------CSVVEKIKRLIHKGE----------KAEDIAVLMRINSQGKILAQYLQ 409

Query: 395 FLKNDYKI 402
             K  Y++
Sbjct: 410 KAKIAYRV 417



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 35/123 (28%)

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            + Q           +  ++ + T+H +KGLE   VF++     +      K        
Sbjct: 423 WVSQAGHDSMMNADGSVGQISLSTIHASKGLEWKRVFIIGCSEGLIPFSSSKS------- 475

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                           EE  RLLYVG+TRA D L I        
Sbjct: 476 ----------------------------DDALEEERRLLYVGITRAQDNLEISYAQAAHP 507

Query: 673 EKK 675
           ++ 
Sbjct: 508 QET 510


>gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
 gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum Ba4 str. 657]
          Length = 855

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 111/317 (35%), Gaps = 68/317 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +   LDF DLII   DL +K  ++ +      ++   I IDE+QDTS I++ ++
Sbjct: 197 YDKKLYERHGLDFNDLIIKVYDLFQKDKITTY----WRKKYKFIHIDEMQDTSEIEYNIV 252

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                +   GD  Q+IY + G+ P  +  + +              
Sbjct: 253 SKLF-----------KNNNIMISGDYYQTIYEWRGSNPTIIFDKYK--------KEYNPE 293

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I    ++RS+ +IL      F +    +G++E     I  ++                 
Sbjct: 294 FIVFDKNYRSS-EILLKASYEFLLNAFGKGVNEIYKEGIEPKA----------------- 335

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                       +   +D + +       A  I   I ++            +V +   +
Sbjct: 336 ----NIKGDLIEFKKAYDFMEE-------ATFIFNKIKSL------------KVEKLSRV 372

Query: 377 LVLVRKRKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +L R  +    ++   + L +      ++  +  D F       IKD++A  + I++  
Sbjct: 373 AILTRNNRINIALSEKFKILNSKLPKEDRVGFLLVDEFKFFRREEIKDVLAYLKLIVNDF 432

Query: 433 DDLSFVCMLKSPLFNFS 449
           D  S   +LK       
Sbjct: 433 DSNSLKRILKKFGKGIG 449



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 80/233 (34%), Gaps = 40/233 (17%)

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            +  DI  +  +     T+   +  +    I KFQ + + I  L  ++   +P D    I
Sbjct: 647 LATKDILMVMLREKVKPTIINRMVVYG-KYIKKFQPIYEEIANLKKLSYIKNPKDIIGEI 705

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--EQYPPTIKRAH 565
           +   K ++ + +++    I+ L EF       E    SS   LI  L       +     
Sbjct: 706 VNKTKIKEIYKAQYIK--INNLREFFVIAKEIENKEVSSRDNLIELLKITSLSNSELDRM 763

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              +  V I+TVH AKG E   VFL    + +F +                         
Sbjct: 764 LTKYPRVPIITVHQAKGAEFDYVFLAALQNNIFPN------------------------- 798

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                        +K+  + E  RL YV MTRA   L +       N +K+  
Sbjct: 799 ----------YMAVKEGNEIEEKRLFYVAMTRAKKYLYLSFSEYEHNRRKAKS 841


>gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
 gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf]
          Length = 855

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 111/317 (35%), Gaps = 68/317 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +   LDF DLII   DL +K  ++ +      ++   I IDE+QDTS I++ ++
Sbjct: 197 YDKKLYERHGLDFNDLIIKVYDLFQKDKITTY----WRKKYKFIHIDEMQDTSEIEYNIV 252

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                +   GD  Q+IY + G+ P  +  + +              
Sbjct: 253 SKLF-----------KNNNIMISGDYYQTIYEWRGSNPTIIFDKYK--------KEYNPE 293

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I    ++RS+ +IL      F +    +G++E     I  ++                 
Sbjct: 294 FIVFDKNYRSS-EILLKASYEFLLNAFGKGVNEIYKEGIEPKA----------------- 335

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                       +   +D + +       A  I   I ++            +V +   +
Sbjct: 336 ----NIKGDLIEFKKAYDFMEE-------ATFIFNKIKSL------------KVEKLSRV 372

Query: 377 LVLVRKRKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +L R  +    ++   + L +      ++  +  D F       IKD++A  + I++  
Sbjct: 373 AILTRNNRINIALSEKFKILNSKLPKEDRVGFLLVDEFKFFRREEIKDVLAYLKLIVNDF 432

Query: 433 DDLSFVCMLKSPLFNFS 449
           D  S   +LK       
Sbjct: 433 DSNSLKRILKKFGKGIG 449



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 80/233 (34%), Gaps = 40/233 (17%)

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            +  DI  +  +     T+   +  +    I KFQ + + I  L  ++   +P D    I
Sbjct: 647 LATKDILMVMLREKVKPTIINRMVVYG-KYIKKFQPIYEEIANLKKLSYIKNPKDIIGEI 705

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--EQYPPTIKRAH 565
           +   K ++ + +++    I+ L EF       E    SS   LI  L       +     
Sbjct: 706 VNKTKIKEIYKAQYIK--INNLREFFVIAKEIENKEVSSRDNLIELLKITSLSNSELDRM 763

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              +  V I+TVH AKG E   VFL    + +F +                         
Sbjct: 764 LTKYPRVPIITVHQAKGAEFDYVFLAALQNNIFPN------------------------- 798

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                        +K+  + E  RL YV MTRA   L +       N +K+  
Sbjct: 799 ----------YMAVKEGNEIEEKRLFYVAMTRAKKYLYLSFSEYEHNRRKAKS 841


>gi|302858190|ref|XP_002960037.1| hypothetical protein VOLCADRAFT_101548 [Volvox carteri f.
           nagariensis]
 gi|300253483|gb|EFJ38898.1| hypothetical protein VOLCADRAFT_101548 [Volvox carteri f.
           nagariensis]
          Length = 308

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 94/288 (32%), Gaps = 36/288 (12%)

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
             +    A+ IA  I  +   D          ++  D+ +  R    +  I  +      
Sbjct: 19  GENEHDEAQFIAKEIDRLQDED---------GLRPGDVAIFYRTNAQSRSIEDVL----V 65

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
              +           +   IKD +A  R +++ +DD++   +L  P     +     +  
Sbjct: 66  RVGLPYKVVGGTRFYERKEIKDALAYLRVLVNPDDDVNLRRVLNEPKRGIGDRAEGAVAA 125

Query: 459 QRHETETVYEYIQKFANCGI-------SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                 T +    + A+          +     +K + +L  +A           +L   
Sbjct: 126 LAERERTSFMAAARRADHAPGMATRSVNAVLGFVKLLDDLAEVASGSGAAAALEAVLEQT 185

Query: 512 KGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSA 567
                  +    +    ++ L E +      E+++   SL E + ++       +   + 
Sbjct: 186 GYLAGLRASNDPQDESRVENLAELVAVVREYERDNPDGSLGEFLEQVSLVADADQIPDAP 245

Query: 568 NHN------------EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             +             V +MT+HTAKGLE PVVFL      +F H+  
Sbjct: 246 GADIDAAVAEAKRMGVVTLMTLHTAKGLEFPVVFLTGMEHGIFPHQRS 293


>gi|328761480|gb|EGF75004.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
           HL099PA1]
          Length = 356

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 21/157 (13%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              + A YE  K++ CV+D +D+++    LL +      I  +I     H ++DE QD S
Sbjct: 188 VGRVLAGYEAVKRERCVIDLDDILLCAVGLLVQH---RDITEEIRARYRHFVVDEYQDVS 244

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  ++     D             +  VGD  Q+I+S+ GA    +L           
Sbjct: 245 PLQHRLLELWFGD----------RNDVCVVGDPHQAIHSYAGARADYLLNFVAD------ 288

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
                   I+L  ++RST +I+ + ++V       + 
Sbjct: 289 --HPGAKRIDLVRNYRSTPEIVQLANEVLVNRMTPEE 323


>gi|227505536|ref|ZP_03935585.1| helicase [Corynebacterium striatum ATCC 6940]
 gi|227197833|gb|EEI77881.1| helicase [Corynebacterium striatum ATCC 6940]
          Length = 1021

 Score =  120 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 106/975 (10%), Positives = 235/975 (24%), Gaps = 169/975 (17%)

Query: 1   LKNRFGLSLNE-SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQT 59
           L+      L + + +           F +        + + TG        + L+  ++ 
Sbjct: 43  LRRELAQHLEDYAAQASMVRSVHSLAFALLRTISEEEIRLITGAEQDAVIRELLEGQAEE 102

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
                 +       +T     +              L++ L ++ +      +     + 
Sbjct: 103 NRG--SWPAEVRPAMTFVGFAR-------------QLRDLLLRAIERGKGPHELMELGQK 147

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           ++      T A      YE  ++   +  +        +L+ +  + + +  K     + 
Sbjct: 148 YQ--QPMWTAAGEFLLEYERTQQLAGLHSYS-----AAELVNEVLLHSELVEK--HPWHT 198

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           I++D+ Q       ++I  L+           S       GD  Q++++F GA  + +  
Sbjct: 199 IIVDDAQLLDPTSGKLIEGLSR----------STELTVVAGDPDQAVFAFRGANSEFLTS 248

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                             + L    R  A          SI ++   L +     +R R 
Sbjct: 249 FPAE------------HELVLEEPRRRPAP------ACISIVDSRSTLRDVVADAVRRRH 290

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                    ++   V S  D     +          +          R +   +  +   
Sbjct: 291 LEDEVPWR-EIAVIVRSTGDIGQVRRTLLAAGVPVHINPTDVILAEQRLVKSILLALRAL 349

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
           D   SN +   +    +          P+           +     G D         + 
Sbjct: 350 DHELSNTELEELVTGPVG------GADPVTLRRLIRGLRRWAPQSRGIDSLRALLEGELP 403

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           D   L                +   + +  +     +  Q    ET++E           
Sbjct: 404 DFSGLL---------TEREQTILERIRSILDAGRAALRAQVSIEETLWEVWNATGLDARL 454

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
           +          L   A           ++        +  R        L+ FL      
Sbjct: 455 QAAA-------LRGGATGSQADRDLDAMMSLFDAAGDYSERRPG---ASLEAFLRHIEEQ 504

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E                 P  ++   +A    V ++T H A G E   V +       + 
Sbjct: 505 E----------------LPTGVRDRRTAIPQAVEVITAHGAVGREWDTVVIAGAQEGTWP 548

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                          D               I          S   E  RL +V  TR  
Sbjct: 549 SLGETGSVFGQEDLIDL----------LDKGIAPGTPVSHVASRLREERRLFHVATTRHR 598

Query: 660 DQLIICKHSNTSNEKKSNQRTW---------------------YDMVYDSFHNDERVKKI 698
            +L+I                +                        +  +    E    +
Sbjct: 599 RRLLIAAVDAPEAAVPEEPSRFVGEFALSGSVDVPGAQTRREATKRLRAAQLPRELGLAV 658

Query: 699 KLTNSINKDEWIAYE--------------------------WSTHHPENTPLEREETIKQ 732
                ++       +                           +        L R      
Sbjct: 659 PEPAPVSVRAEREIDPLDVAVLSVPSFVAQLRRVVVSASSGEAERSQAARQLARLAKAGV 718

Query: 733 LMDEQKIPKKLFSPIK------NDINEPYILNPSTIDTKGKTNLE-------SLLSDNQT 779
                +      S          +      ++PS ++      L           S    
Sbjct: 719 PGAHPESWWAARSVATDVLADMEEAVAVGRVSPSRVEALLNCPLSAILGNLAEEESTPMH 778

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
             RG + H  L+ +    E +    +      +    P  + ++ + +  RL++      
Sbjct: 779 LIRGTMAHAYLEALGRGIEPELGKKMVMEAFASIVDGPGWKMRSDMAAFERLIDRTHQWA 838

Query: 840 AMSCDSYSEVSVSGKINCPK-KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
             S  S+  + V   ++      I ++G +D++  +  +  + + KT       +     
Sbjct: 839 MNSESSFELIGVEVPVSVEVLPGITVAGYMDRLVKAGDDYMVVDLKTG---NSAVTAKQA 895

Query: 899 THIAQLSIYEKILKD 913
               QL  Y+  L+ 
Sbjct: 896 KENPQLMTYQLALER 910


>gi|315226989|ref|ZP_07868776.1| excision endonuclease subunit UvrD [Parascardovia denticolens DSM
           10105]
 gi|315119439|gb|EFT82572.1| excision endonuclease subunit UvrD [Parascardovia denticolens DSM
           10105]
          Length = 491

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 118/362 (32%), Gaps = 71/362 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
           T  K +   YEE K  + V+DF D+++    +L+K    A    +I + I  + +DE QD
Sbjct: 172 TAMKAVMDAYEEEKVFHGVMDFNDILLLLCHVLEKEPDQA---ARIRKGIGWLTVDEYQD 228

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            S +Q  ++     +           R +  VGD  Q+IYSF GA    + R        
Sbjct: 229 VSPLQHRLMTLWLGE----------NRNVCVVGDAAQTIYSFAGATSYYLNRFDWEFAPL 278

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
             +       I L   +RST  I+   + +             ++           + G 
Sbjct: 279 TAD-------ISLNRDYRSTPTIVAQANALLEKSPLRDDYLHLASGR---------EPGR 322

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             L                           + SS    AR IA  I  ++ +        
Sbjct: 323 KVL-------------------------KTRYSSDVHEARGIAGKIKRLMASG------- 350

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD--LMALG 425
               +A DI VL+R    + L++ + +       I      R    D     D  L A G
Sbjct: 351 ---AKAGDIAVLMRINNQSRLLSSVFKEE----GIPFR-VRRDSGWDSQTSHDSLLNADG 402

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
                    +     L+ P           I    + T+   E  ++    G+++ +  +
Sbjct: 403 TVGQVTLSTIHASKGLEWPYVFIMGCSDGLIPYATNMTDQGLEEERRLLYVGVTRAEDFL 462

Query: 486 KY 487
           + 
Sbjct: 463 EI 464



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 47/154 (30%), Gaps = 36/154 (23%)

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
            I+     L+   + E+     ++       Q              +V + T+H +KGLE
Sbjct: 361 RINNQSRLLSSVFK-EEGIPFRVRRDSGWDSQTSHDSLLNADGTVGQVTLSTIHASKGLE 419

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            P VF++     +  +                                      +     
Sbjct: 420 WPYVFIMGCSDGLIPYATN-----------------------------------MTDQGL 444

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
           EE  RLLYVG+TRA D L I        E + + 
Sbjct: 445 EEERRLLYVGVTRAEDFLEISYSQGMRKEGEQDS 478


>gi|323359571|ref|YP_004225967.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
 gi|323275942|dbj|BAJ76087.1| superfamily I DNA and RNA helicase [Microbacterium testaceum
           StLB037]
          Length = 584

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/388 (14%), Positives = 114/388 (29%), Gaps = 71/388 (18%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +++   +        +     L   YE+ K +   +DFED+I+    +++       +  
Sbjct: 151 EQYAAARPEGVGRLRVDQVVDLQRAYEKLKDERRQMDFEDVILTCAGMIEAEP---RVAA 207

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            + ++  H  +DE QD S +Q  ++     D           R L  VGD  Q+IYSF G
Sbjct: 208 AVHEQYRHFTVDEYQDVSPLQNRLLELWLGD----------RRDLCVVGDASQTIYSFTG 257

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A+ + +L  +R          +   ++ L  ++RST  +L V + +      A  L    
Sbjct: 258 ADARYLLEFER--------THEDARVVRLERNYRSTGAVLAVANDLMRGRAGALELVAAH 309

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                  + R                                     E  AS +A  +A 
Sbjct: 310 EGDAPVPAVRA--------------------------------YDDDEGEASGVAADVAA 337

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            I++                  + I +L R    + ++            ++        
Sbjct: 338 RIAD--------------GADPESIAILYRSHAQSAVVLNALAA----QGVAATVLGGRK 379

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
             D   ++  +   R       +  F+  ++  L      D                   
Sbjct: 380 FFDLPEVRQALMALRAASVAPVETGFLATVRDVLRGVGLTDEPPQAGGALRDGWEARAAL 439

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCS 499
                  +    +  +  +L   A+   
Sbjct: 440 LRLAEEAAPGTDLRSFTDDLQARARDQH 467



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 51/178 (28%), Gaps = 43/178 (24%)

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           R G E    L          E    + L+    +L+                V + T+H 
Sbjct: 430 RDGWEARAALLRLAE-----EAAPGTDLRSFTDDLQARARDQH---EPATRTVTLSTLHA 481

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           AKGLE   VFL+     +    +                                     
Sbjct: 482 AKGLEWDHVFLIGVSEGLLPISYATSF--------------------------------- 508

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                +E  RL YVG+TRA+  L +          +   R   ++   S  +D+ + +
Sbjct: 509 --EAVDEERRLAYVGVTRAARSLSVSWARGRGRADREPSRFLREIGSGSLRSDDGLPR 564


>gi|294631277|ref|ZP_06709837.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
 gi|292834610|gb|EFF92959.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
          Length = 518

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 110/364 (30%), Gaps = 36/364 (9%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
           L + +G    +     L               L    +      +  + T+    +   +
Sbjct: 137 LRLLSGPEQDVTVRDLLAGQVD-------LERLGLAHVRWPDELRACLTTRGFADEVRAV 189

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
                 ++   + +          +        A    A Y +      VLD+ +L+   
Sbjct: 190 L-----ARSRELGLGPDALAAFARRIGRPDWQAAAVFLAEYLDVLDLQGVLDYAELVHRA 244

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L ++ +V+     ++    + + +DE QDT   Q  ++R+L              RTL
Sbjct: 245 VLLARRPEVAD----RLAARYDAVYVDEYQDTDPAQVRLLRALAG----------GGRTL 290

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            A GD  QSIY+F GA+   +L+  +   +     G    +  L  + RS A +L     
Sbjct: 291 LAFGDPDQSIYAFRGADVNGILQFPQAFPR---ADGTPAPVAVLRTARRSGAALLAATRL 347

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
           +       +  ++          +R G  G V++        +              D +
Sbjct: 348 LAQRMPLTRLPADKVRAHRELVPARDG--GRVEVHTYPTPGAEVDNIADVLRRAHLEDGV 405

Query: 337 PQESSASIL---ARRIAYTISNMIGTDTIFSNGKKRVIQAKD--ILVLVRKRKDTPLITF 391
           P    A ++   AR I      +             +    +  +  L+   +       
Sbjct: 406 PWGEMAVLVRAGARTIPTLRRALTAAGVPLDVDGDDLPLRHEPAVAPLLTALRAVATAEA 465

Query: 392 LTRF 395
             R 
Sbjct: 466 AQRA 469


>gi|85859507|ref|YP_461709.1| ATP-dependent DNA helicase [Syntrophus aciditrophicus SB]
 gi|85722598|gb|ABC77541.1| ATP-dependent DNA helicase [Syntrophus aciditrophicus SB]
          Length = 696

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 87/549 (15%), Positives = 168/549 (30%), Gaps = 123/549 (22%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            ++I    D L++  +          +I+H+++DE QD +    E +R L+ +       
Sbjct: 200 GEVIYKCVDALQQGALQPNQLP----QIDHLIVDEFQDLNACDQEFVRLLSAN------- 248

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 LF  GD+ QSIYSF  A P  +++ +      AT+         L   FR T  
Sbjct: 249 ---NTILFVAGDDDQSIYSFRHANPDGIVQFQTAYPASATH--------VLTDCFRCTPA 297

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           +L    ++ +   N    +  S     + ++     G + +W    +Q +          
Sbjct: 298 VLGPASRLITYNLNRVAKNLTSL----YGAATPPVQGRMMVWSFQTAQEE---------- 343

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                           AR IA +   +I                 +IL+L+  R    + 
Sbjct: 344 ----------------ARAIAQSCQAIINAGMAGRE--------DEILILISNR---RVQ 376

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLA-IKDLMALGRFILSQ---EDDLSFVCMLKSPL 445
             +      +  +         LT     I+ + ++ R        E+D      L   L
Sbjct: 377 LDMLAQELGNLGLPYDPPRGAALTSEYEAIRAVYSVLRIARDNSSGEEDYPAHRDLLEVL 436

Query: 446 FNFSE-------DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
                       D          +   +      F+    S  Q V+  +  +   +   
Sbjct: 437 SGVGSATAKGVADACISNNQNFRQLFYLPTCPTWFSGRCPSAVQRVMATVQTVRTWSMSD 496

Query: 499 SPHD--------FFTLILGAKKGRQQFISRF-----GNEVIDVLDEFLNFTLRNEQNSYS 545
           +             + +  + +     +S +            L+E L F   + ++   
Sbjct: 497 TLAARSGDITTLLSSQVFTSGRNAANSLSIWNTLIGSLPAQMTLEELLQFLAADSESDQQ 556

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           ++ +L++  ++      +A       +RI+T+H AKGL   VVF+  T   +  +     
Sbjct: 557 AILDLVN--QRIGGAQPQAQVPVQKRIRILTMHGAKGLSGKVVFIPSTEQGLMPN----- 609

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                                   E  RL YV +TRA    I  
Sbjct: 610 -----------------------------FRALQATGLLIEQRRLFYVSVTRAMACCIAS 640

Query: 666 KHSNTSNEK 674
             +  S  +
Sbjct: 641 HAAQHSGAQ 649


>gi|190345165|gb|EDK37003.2| hypothetical protein PGUG_01101 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 756

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 96/619 (15%), Positives = 175/619 (28%), Gaps = 137/619 (22%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
           +  +I     +    +       ++        +  K N ++ + DLI+N  ++L     
Sbjct: 157 KLEQILQAVKSGASIEDQAKKYNVSSEYIGSVLDYLKANKMIRYNDLIVNALEMLNSTRN 216

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            A +          +++DE QD       +++++      G++  S+ + L   GD  Q+
Sbjct: 217 IARLTN-----YKIVIVDEFQDMYPQLLSLVKAVVAYPTAGRSV-SAKKHLTIAGDPNQT 270

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY F G++PK +                  + + L  SFR T ++L V  KV        
Sbjct: 271 IYEFLGSDPKLLHDIGTYL-------NMNVTELSLGESFRCTPEVLQVASKV-------- 315

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                S       S R  +   ++    +      + +                      
Sbjct: 316 --GLSSAGLSTANSIRSLKPPGIKPVLSLHKSSREEHD---------------------- 351

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              IA  I+ +I            ++   D  +L R       +  ++  L  +Y  S  
Sbjct: 352 --FIASEITRLI-------CVSGGLLVPSDFAILTRAN---RELDEISHTLLQNYGYSCN 399

Query: 406 GNDRFILTDHLAIKDL-------------MALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                       +  L                   +L + D  +      S LF+ S   
Sbjct: 400 RFSSSSSWIKSRVHLLLDLLSLLNGGMGSNFALLCLLPRLDRRAGNSRRVSKLFHMSNSW 459

Query: 453 IFKICTQR-------------HETETVYEYIQKFANCGISKFQHVIKYIHEL----IHIA 495
             ++   R              ++   +  +  +       F    K + +       +A
Sbjct: 460 NNEVWGGRLEDYLRQELGNLGEKSRGKFSILNVYKGPENRAFLEATKKLLDWTDKTREVA 519

Query: 496 QFCSPHDFFTLILGAKKGRQQFIS-----------------RFGNEVIDVLDEFLNFTLR 538
              +P      +L                            R   E+ + L  F      
Sbjct: 520 AELAPLSILKSLLTITSDLDLLDYLNKPESTHRSPGADADFRTQTELENNLAGFYKSLCA 579

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             ++    +    S LE +           + N + I TVHTAKGLE PVVF+       
Sbjct: 580 CHKSFMLDMDTTTSFLEYFLRNYNEEPPILDRNMINISTVHTAKGLEFPVVFIAGVKDA- 638

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             H       +      D                             EE  RL YV  TR
Sbjct: 639 --HSSFWSSLLNNEGRHD-----------------------------EEKARLFYVACTR 667

Query: 658 ASDQLIICKHSNTSNEKKS 676
           A + L +        E +S
Sbjct: 668 ARNLLYVSTSKPVGPEIRS 686


>gi|262361074|gb|ACY57795.1| exodeoxyribonuclease V beta chain [Yersinia pestis D106004]
          Length = 605

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/556 (10%), Positives = 142/556 (25%), Gaps = 113/556 (20%)

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           + + +       +  +       + + +    +        + V+  + E++        
Sbjct: 1   MATGILGLDARMLDALNHDERAWDALVDEFDHYRQHWQR--RGVLPMLREMMARRH---- 54

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ---Y 557
                 +L    G ++            L E L        + ++ ++ L  ++ Q    
Sbjct: 55  --LAENLLATPGGERRLTDLL------HLGELLQEAASQLDSEHALIRWLAQQIAQPNPQ 106

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
             + +    ++ + VR++T+H +KGLE P+V+L   G+       +              
Sbjct: 107 SDSQQLRLESDRHLVRVVTIHKSKGLEYPLVWLPFIGNFRQQQNVLYHDRHSFEAL---- 162

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL------IICKHSNTS 671
                       N   +     ++    E  RLLYV +TR+          +I       
Sbjct: 163 ---------LDLNADEESQALAEEERLAEDLRLLYVALTRSVYHCSVGIAPLIKGGRKKQ 213

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW-----IAYEWSTHHPENTPLER 726
            E   ++     +V      D  V   KLT                       +  P   
Sbjct: 214 GESDMHRSALGYLVQHGQPGDAHVLSEKLTELARSSNGDICVSPVEPPDDKPWQPQPEAL 273

Query: 727 EETIKQ--LMDEQKIPKKLFSPIKNDINEPYILNPSTID--------------------- 763
            E   +      Q   +               L  S                        
Sbjct: 274 PELTARHFTRKMQDYWRVTSYSGLQQSGSTKKLYGSATGDVSQALGAPLQVLLPRLDIDA 333

Query: 764 -----TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
                   + +  +  +  +    G  +H LL+ +      +             + +  
Sbjct: 334 VGEQAVVTEDDHLTPHTFPRGAAPGTFLHDLLEPLDFSQPIELAWLSERL---QQQGFSE 390

Query: 819 KEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKK------------ 860
           +    L   +  +++ P+      +         +E+     I+   +            
Sbjct: 391 QWAPVLHQWLNDIVQTPLTDTGATLAGLSPERKQAELQFYLPIDSLLRAEVLDRLIKQYD 450

Query: 861 --------------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY-------- 898
                           ++ G ID +   Q   ++ +YK++        +           
Sbjct: 451 PLSRQCPVLDFQQVRGMLKGFIDLVFCWQGQYYLLDYKSNWLGEDSRAYTVEAMTQAMAE 510

Query: 899 -THIAQLSIYEKILKD 913
             +  Q  +Y   L  
Sbjct: 511 HRYDLQYQLYTLALHR 526


>gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
 gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum NCTC 2916]
          Length = 855

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 111/320 (34%), Gaps = 68/320 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +   LDF DLII   DL +K  ++ +      ++   I IDE+QDTS I++ ++
Sbjct: 197 YDKKLYERHGLDFNDLIIKVYDLFQKDKITTY----WREKYKFIHIDEMQDTSEIEYNIV 252

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                +   GD  Q+IY + G+ P  +  + +              
Sbjct: 253 SKLF-----------RNNNIMLSGDYYQTIYEWRGSNPIIIFDKYK--------KEYNPE 293

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I    ++RS+ +IL      F +    + ++E     I  ++                 
Sbjct: 294 FIVFDKNYRSS-EILLKASYEFLLNAFGKDVNEIYKEGIEPKA----------------- 335

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                       +   +D + +       A  I   I ++            +V +   +
Sbjct: 336 ----NIKGDLIEFKKAYDFMEE-------ATFIFNKIKSL------------KVEKLSRV 372

Query: 377 LVLVRKRKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +L R  +    ++   + L +      ++  +  D F       IKD++A  + I++  
Sbjct: 373 AILTRNNRINIALSEKFKILNSKLPKEERVGFLLVDEFKFFRREEIKDVLAYLKLIVNDF 432

Query: 433 DDLSFVCMLKSPLFNFSEDD 452
           D  S   +LK       E  
Sbjct: 433 DSNSLKRILKKFGKGIGERT 452



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 69/205 (33%), Gaps = 39/205 (19%)

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
             I KFQ + K I  L  +    +P D    I+   K ++ +  ++    I+ L EF   
Sbjct: 674 KYIKKFQPIYKEITNLKKLTYIKNPKDIIGEIVNKTKIKEIYKDQYIK--INNLREFFVI 731

Query: 536 TLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               E    SS   LI  L       +        +  V I+TVH AKG E   VFL   
Sbjct: 732 AKEIENKEISSRDNLIELLKITSLSNSELDRMLTKYPRVPIITVHQAKGAEFDYVFLAGL 791

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            + +F +                                      +K+  + E  RL YV
Sbjct: 792 QNNIFPN-----------------------------------YMAVKEGNEIEEKRLFYV 816

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ 678
            MTRA   L I       N +K+  
Sbjct: 817 AMTRAKKYLYISFSEYEHNRRKAKS 841


>gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
 gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum A str. Hall]
          Length = 855

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 111/320 (34%), Gaps = 68/320 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +   LDF DLII   DL +K  ++ +      ++   I IDE+QDTS I++ ++
Sbjct: 197 YDKKLYERHGLDFNDLIIKVYDLFQKDKITTY----WREKYKFIHIDEMQDTSEIEYNIV 252

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                +   GD  Q+IY + G+ P  +  + +              
Sbjct: 253 SKLF-----------RNNNIMLSGDYYQTIYEWRGSNPIIIFDKYK--------KEYNPE 293

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I    ++RS+ +IL      F +    + ++E     I  ++                 
Sbjct: 294 FIVFDKNYRSS-EILLKASYEFLLNAFGKDVNEIYKEGIEPKA----------------- 335

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                       +   +D + +       A  I   I ++            +V +   +
Sbjct: 336 ----NIKGDLIEFKKAYDFMEE-------ATFIFNKIKSL------------KVEKLSRV 372

Query: 377 LVLVRKRKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +L R  +    ++   + L +      ++  +  D F       IKD++A  + I++  
Sbjct: 373 AILTRNNRINIALSEKFKILNSKLPKEERVGFLLVDEFKFFRREEIKDVLAYLKLIVNDF 432

Query: 433 DDLSFVCMLKSPLFNFSEDD 452
           D  S   +LK       E  
Sbjct: 433 DSNSLKRILKKFGKGIGERT 452



 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 69/205 (33%), Gaps = 39/205 (19%)

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
             I KFQ + K I  L  +    +P D    I+   K ++ +  ++    I+ L EF   
Sbjct: 674 KYIKKFQPIYKEITNLKKLTYIKNPKDIIGEIVNKTKIKEIYKDQYIK--INNLREFFVI 731

Query: 536 TLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               E    SS   LI  L       +        +  V I+TVH AKG E   VFL   
Sbjct: 732 AKEIENKEISSRDNLIELLKITSLSNSELDRMLTKYPRVPIITVHQAKGAEFDYVFLAGL 791

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            + +F +                                      +K+  + E  RL YV
Sbjct: 792 QNNIFPN-----------------------------------YMAVKEGNEIEEKRLFYV 816

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ 678
            MTRA   L I       N +K+  
Sbjct: 817 AMTRAKKYLYISFSEYEHNRRKAKS 841


>gi|301597911|ref|ZP_07242919.1| UvrD/REP helicase [Acinetobacter baumannii AB059]
          Length = 427

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 91/303 (30%), Gaps = 38/303 (12%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L            KN     +      +         ++   +++ N  +    T  +  
Sbjct: 111 LQGLLPNDFKIANKNECNLAVENAYKAIYNDGGDPHAQWEFAKEKRN--REVDRTHPAWK 168

Query: 129 ----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                       YE   +K  ++DF+D+ +    ++K+     WIR+ ++     + +DE
Sbjct: 169 GHNKELAEFIEEYESELRKKGLIDFDDMPLIAFKMIKEN---LWIRHALECRFPILFVDE 225

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD   +  E++  L  D             LFAVGD  QSIY F GA P+ +       
Sbjct: 226 YQDLGHVLHELVHLLCFD---------GKIRLFAVGDADQSIYGFTGANPELLQSLTER- 275

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I+L  ++RS   I+           N +         I     +   
Sbjct: 276 --------DDVETIQLRYNYRSGTRIVKASLAALDEERNYETPEGTPEGEIIFNPVK--- 324

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                     + +  +    +     +      ++ +    A  +   I   +    I  
Sbjct: 325 --------GTLEEQANFIVDKLLGELASKGLKNEQIAILYKAAWLGNKIVEALEAKKIPY 376

Query: 365 NGK 367
           +  
Sbjct: 377 HRT 379


>gi|306822348|ref|ZP_07455727.1| excision endonuclease subunit UvrD [Bifidobacterium dentium ATCC
           27679]
 gi|309802142|ref|ZP_07696251.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
 gi|304554346|gb|EFM42254.1| excision endonuclease subunit UvrD [Bifidobacterium dentium ATCC
           27679]
 gi|308221222|gb|EFO77525.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022]
          Length = 502

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 84/269 (31%), Gaps = 64/269 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K     +DF+D+++    +L+  D ++     I   I  + +DE QD S +
Sbjct: 183 DVYQAYETEKTARGEIDFDDILLIACHVLESYDEAS---AAIRSSIGWLTVDEYQDVSPL 239

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++              S  R +  VGD  Q+IYSF GA    +L         + + 
Sbjct: 240 QHRLLTRWL----------SGNRNICVVGDPAQTIYSFAGASSYSLLDFAGEFGPLSAD- 288

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I L   +RST  I+   ++V                 +  +S R       Q  
Sbjct: 289 ------ISLNRDYRSTPQIVNYANRVLKASPQR-------DDYLVLQSGREQGPRVTQ-- 333

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                       +S +  A+ +A  I+ +              +
Sbjct: 334 -------------------------TVYASDTEEAQGVAMRIAKLASQG----------V 358

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDY 400
              D  +L R      ++    +     Y
Sbjct: 359 SPSDCAILTRINAQQQILCKALQEQHLRY 387



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 35/105 (33%)

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           ++ N V I T+H +KGLE   VFL+     +  +   +                      
Sbjct: 418 SDMNGVTISTIHASKGLEFKHVFLIGCSEGLLPYGSPQDG-------------------- 457

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                             EE  RLLYVG+TRA D L +    +  
Sbjct: 458 ---------------DQLEEERRLLYVGVTRAEDTLHLSYARSKD 487


>gi|222480752|ref|YP_002566989.1| ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein
            (contains helicase and exonuclease domains) [Halorubrum
            lacusprofundi ATCC 49239]
 gi|222453654|gb|ACM57919.1| ATP-dependent exoDNAse (exonuclease V) beta subunit-like protein
            (contains helicase and exonuclease domains) [Halorubrum
            lacusprofundi ATCC 49239]
          Length = 1227

 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 103/983 (10%), Positives = 237/983 (24%), Gaps = 169/983 (17%)

Query: 104  QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            ++  +                   T+       Y  A ++   +   D+    +    + 
Sbjct: 278  RERLLDADRELYDAWDA-RIDDFCTVLSAYRTRYRAAVREYGAVSHTDVASLVDAYFDRS 336

Query: 164  DVS---------------AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
                                +       I  ++IDE QD S +Q   +  +         
Sbjct: 337  GERSDLPEPLRSVDGSHRDRVLRTYRSRIRSLVIDEAQDVSAVQHAALSHVV-------- 388

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
              +S   +FA GD  Q IY +  A+P+                           ++R   
Sbjct: 389  --TSESRVFACGDGLQGIYLWRHADPRWFAAATTE-GTYLGVDWDTHENRTATTTYRCVP 445

Query: 269  DILTVVDKVFS---IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            DI   ++ +            L +   +  R  ++R G  G       V S         
Sbjct: 446  DIAAGINAIAEPVFSDPARGNLGDLDASYPRLDAARDGGEGGDGAAVHVSSFAGIGHPGS 505

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
               W      L +       A  +A  IS  +   T  ++          + VL R+   
Sbjct: 506  A-MWADPDGELGE-------ANMLATHISRGLADGTFCNDDG----DPLGVTVLFRRGTR 553

Query: 386  TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
             P                 V      L D  A++  +A   ++ +         +L    
Sbjct: 554  MPEYEAAFAAEGLR-----VRTATDALFDCPAVETALAACEWLTAPGSPQRTSKLLTESP 608

Query: 446  FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
             N + D              + +             + ++  + +           ++  
Sbjct: 609  LNAAFDAAPFESRSWDLDRVLDDDPAAVGEEQRGILRGLV-RLRDRSDAFGRLPASEYVE 667

Query: 506  LILGAKKGRQQ----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT- 560
             ++ A   R            ++ +  LD  +      E ++  S  EL+   E +    
Sbjct: 668  DVIEALALRADPNGCVGDTDPDQRVANLDALVETLSEWEGDNSYSPSELVDLAEPFREDP 727

Query: 561  ----IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD- 615
                 + + +    +V   T+H AKG +  VV + D G  ++SH    +  +        
Sbjct: 728  GVGPTQPSAAGAAYDVEFRTIHRAKGDQDDVVVVADPGFDIWSHGPHARWFVAQGPLAGL 787

Query: 616  -----------------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQ-------------- 644
                              G    +     R+  +       + +                
Sbjct: 788  APPTNTEVPDDIAIPPFDGGLYGVGDDWDRDAGLRWATARWRDTVSTSVSDSASDSAKDS 847

Query: 645  -------------------------EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                                     +   R+       A   L +       +      R
Sbjct: 848  GSDSAKDSGSDSANDSADRDALVGPDRLRRVAGNERAEAWRLLYVALTRARDHLVVPLPR 907

Query: 680  TWYDMVYDSFHNDERVKK--------IKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
            +  +         + ++               +   +           +     R     
Sbjct: 908  SNLEEDRTRDRWLDAIRDGLAFRRGGTDSYELLLDSDPNRDAIEIGVNDADLFARRARPA 967

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT----------------------- 768
                  +  +      + D   P  L+PST+    +                        
Sbjct: 968  PRTGRDEATESPPRRDRLDPWVPRFLSPSTMYPLTEDVDRYALAHLLGEPLHTTTNEVSG 1027

Query: 769  NLESLLSDNQTFNRGLIIHKLL---------QVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
            +L            G  +H  L         +        + +           +     
Sbjct: 1028 DLPLRFDRLGPEAVGTCLHDALTELVARGVDERAIRTTGPEVRTAFDEAVNAIPEPVGEA 1087

Query: 820  EYKNLLLSITRLLENPMMTTAMSCDS------YSEVSVSGKINCPKKDIIISGRIDQISI 873
            E + +      +L++ + +      +       +E  + G        + I GR D +  
Sbjct: 1088 EREGMFAFFETVLDDFLDSDLWDRIADPATVVDTERPLDGLAEVGDLGVEIHGRADFVVE 1147

Query: 874  SQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD-----SYPNKSLVCLLIYV 927
                + F+ + K     P         +  Q++ Y  + +         ++++    +  
Sbjct: 1148 YPTGDRFVTDVKIALTEPSS--ETRRRYELQIAAYAFLARQSGASDVRVHRTVETFGVAT 1205

Query: 928  SEPKVFIIPQNKLNKAFAEISTK 950
                    P + +++       +
Sbjct: 1206 ETTATSW-PPDIVHRRLQRFLGR 1227


>gi|228964028|ref|ZP_04125158.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228795680|gb|EEM43157.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 619

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 97/326 (29%), Gaps = 64/326 (19%)

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
               + +++ +N      +  + K   E     +        +  + +           +
Sbjct: 155 EIVASSLSRALNMIRQGFEGVVYKHWQEIDLYTEFRVPLDSGQRVIITGKDMIEFWKRIQ 214

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                    D++ LI  + ++L K    ++   +I   + HIL+DE QDTSL Q  ++  
Sbjct: 215 RVNLIKNQTDYQGLITESLEILTKE---SYTYEQITTNLRHILVDEFQDTSLAQETLLFQ 271

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L              + +  VGD+ Q+IY+F+G+    +                K   +
Sbjct: 272 LAG----------VDKHIMVVGDKNQAIYTFNGSNHGNIQHFYEHF---YNKHPLKTEEV 318

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L  ++RST +I+ + +                                      +   +
Sbjct: 319 YLNKNYRSTQEIIALSNHFIQEN-------------------------------IIEPNN 347

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
            +          +    L         A  IA  + ++          + +    +DI +
Sbjct: 348 KTDSGITPYIINTPTIELA--------AEYIAQQVHHL---------KEHKNASYEDICI 390

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISV 404
           L RK           +   +   I  
Sbjct: 391 LYRKNSTYSPQANQVKTALHSIGIPY 416



 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 77/253 (30%), Gaps = 57/253 (22%)

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE-------TETVYEYIQKFANCGISKF 481
            ++ D      ++ +P    + + I +      E          +        +   ++ 
Sbjct: 346 NNKTDSGITPYIINTPTIELAAEYIAQQVHHLKEHKNASYEDICILYRKNSTYSPQANQV 405

Query: 482 QHVIKYI-----HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
           +  +  I      +LI   +  +  +    I                   + + EF+   
Sbjct: 406 KTALHSIGIPYKDDLIDKEEKLNLKESLLHICDEYP-SASLQELVHLLAEEPMKEFVLNA 464

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           + +       L + I EL+ + P          + V I +VH++KG E P+VF++  G +
Sbjct: 465 MEDGALDTDDLIDFIIELDDFVPEDIH------DSVTIRSVHSSKGQEYPIVFILFLGDK 518

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F H     +                                       E  RLLYVG+T
Sbjct: 519 QFPHGSNPNI--------------------------------------AEERRLLYVGIT 540

Query: 657 RASDQLIICKHSN 669
           RA  +L +     
Sbjct: 541 RAQKRLFLLGQHG 553


>gi|325522724|gb|EGD01222.1| UvrD/REP helicase [Burkholderia sp. TJI49]
          Length = 272

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 13/116 (11%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y++  ++  V+DF +L++   +LL      A +R        HIL+DE QDT+ +
Sbjct: 169 ELYQAYDQQCQREGVVDFPELLLRCYELLAYN---APLRAHYQARFRHILVDEFQDTNKL 225

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           Q+  ++ L                +FAVGD+ QSIY+F GA    +   +   + R
Sbjct: 226 QYAWLKMLAG----------GENAIFAVGDDDQSIYAFRGANVGNMRDFEDEFRVR 271


>gi|146423595|ref|XP_001487724.1| hypothetical protein PGUG_01101 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 756

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 101/659 (15%), Positives = 191/659 (28%), Gaps = 145/659 (22%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           LS+  L   F+ +    ++    +     + +  +  +  +I     +    +       
Sbjct: 122 LSNRVLVDDFSWRS--FSKIFLTRPGLDHKAVSITPSKLEQILQAVKSGASIEDQAKKYN 179

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           ++        +  K N ++ + DLI+N  ++L           ++      +++DE QD 
Sbjct: 180 VSSEYIGLVLDYLKANKMIRYNDLIVNALEMLN----LTRNIARLTN-YKIVIVDEFQDM 234

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
                 +++++      G+   S+ + L   GD  Q+IY F G++PK +           
Sbjct: 235 YPQLLSLVKAVVAYPTAGRLV-SAKKHLTIAGDPNQTIYEFLGSDPKLLHDIGTYL---- 289

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  + + L  SFR T ++L V  KV             S   +   S R  +   +
Sbjct: 290 ---NMNVTELSLGESFRCTPEVLQVASKV----------GLSSAGLLTANSIRSLKPPGI 336

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +    +      + +                         IA  I+ +I           
Sbjct: 337 KPVLLLHKSSREEHD------------------------FIASEITRLI-------CVLG 365

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA----------- 417
            ++   D  +L R       +  ++  L  +Y  S    +RF L+               
Sbjct: 366 GLLVPSDFAILTRAN---RELDEISHTLLQNYGYSC---NRFSLSSSWIKSRVHLLLDLL 419

Query: 418 -----IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR------------ 460
                   L      +L + D  +      S LF+ S     ++   R            
Sbjct: 420 SLLNGGMGLNFALLCLLPRLDRRAGNSRRVSKLFHMSNSWNNEVWGGRLEDYLRQELGNL 479

Query: 461 -HETETVYEYIQKFANCGISKFQHVIKYIHEL----IHIAQFCSPHDFFTLILGAKKGRQ 515
             ++   +  +  +       F    K + +       +A   +P      +L       
Sbjct: 480 GEKSRGKFSILNVYKGPENRAFLEATKKLLDWTDKTREVAAELAPLLILKSLLTITSDLD 539

Query: 516 QFIS-----------------RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
                                R   E+ + L  F        ++    +      LE + 
Sbjct: 540 LLDYLNKPESTHRSPGADADFRTQTELENNLAGFYKSLCACHKSFMLDMDTTTLFLEYFL 599

Query: 559 PTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                     + N + I TVHTAKGLE PVVF+         H       +      D  
Sbjct: 600 RNYNEEPPILDRNMINISTVHTAKGLEFPVVFIAGVKDA---HSSFWSSLLNNEGRHD-- 654

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                      EE  RL YV  TRA + L +        E +S
Sbjct: 655 ---------------------------EEKARLFYVACTRARNLLYVSTLKPVGPEIRS 686


>gi|301513245|ref|ZP_07238482.1| UvrD/REP helicase [Acinetobacter baumannii AB058]
          Length = 447

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 91/303 (30%), Gaps = 38/303 (12%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L            KN     +      +         ++   +++ N  +    T  +  
Sbjct: 111 LQGLLPNDFKIANKNECNLAVENAYKAIYNDGGDPHAQWEFAKEKRN--REVDRTHPAWK 168

Query: 129 ----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                       YE   +K  ++DF+D+ +    ++K+     WIR+ ++     + +DE
Sbjct: 169 GHNKELAEFIEEYESELRKKGLIDFDDMPLIAFKMIKEN---LWIRHALECRFPILFVDE 225

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD   +  E++  L  D             LFAVGD  QSIY F GA P+ +       
Sbjct: 226 YQDLGHVLHELVHLLCFD---------GKIRLFAVGDADQSIYGFTGANPELLQSLTER- 275

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        I+L  ++RS   I+           N +         I     +   
Sbjct: 276 --------DDVETIQLRYNYRSGTRIVKASLAALDEERNYETPEGTPEGEIIFNPVK--- 324

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                     + +  +    +     +      ++ +    A  +   I   +    I  
Sbjct: 325 --------GTLEEQANFIVDKLLGELASKGLKNEQIAILYKAAWLGNKIVEALEAKKIPY 376

Query: 365 NGK 367
           +  
Sbjct: 377 HRT 379


>gi|170754352|ref|YP_001780953.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
 gi|169119564|gb|ACA43400.1| helicase, UvrD/REP/exonuclease family protein [Clostridium
           botulinum B1 str. Okra]
          Length = 855

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 111/320 (34%), Gaps = 68/320 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +   LDF DLII  +DL +K  ++ +      ++   I IDE+QDTS I++ ++
Sbjct: 197 YDKKLYERHGLDFNDLIIKVHDLFQKDKITTY----WREKYKFIHIDEIQDTSEIEYNIV 252

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             L                +   GD  Q+IY + G+ P  +       +K          
Sbjct: 253 SKLF-----------KNNNIMLSGDYYQTIYEWRGSNPSIIF---DNYKKEFN-----PE 293

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I    ++RS+ +IL      F       G++E     I  R+                 
Sbjct: 294 FIVFDKNYRSS-EILLKASYGFLTNAFGDGVNEIYKEGIEPRA----------------- 335

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                       +   +D + +       A  I   I ++            +V +   +
Sbjct: 336 ----NIKGDLIEFKKAYDFMEE-------ATFIFNKIKSL------------KVEKLSRV 372

Query: 377 LVLVRKRKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +L R  +    ++   + L +      ++  +  D F       IKD++A  + I++  
Sbjct: 373 AILTRNNRINIALSEKFKILNSKLPKEDRVGFLLVDEFKFFRREEIKDVLAYLKLIVNDF 432

Query: 433 DDLSFVCMLKSPLFNFSEDD 452
           D  S   +LK       E  
Sbjct: 433 DSNSLKRILKKFGKGIGERT 452



 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 70/205 (34%), Gaps = 39/205 (19%)

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
             I KF+ + + I  L  ++   +P D    I+   K ++ +  ++    I+ L EF   
Sbjct: 674 KYIKKFEPIYEEITNLKKLSYIKNPKDIIGEIVNKTKIKEIYKDQYIK--INNLREFFVI 731

Query: 536 TLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               E    SS   LI  L       +        +  V I+TVH AKG E   VFL   
Sbjct: 732 AKEIENKEISSRDNLIELLKITSLSNSELDRMLTKYPRVPIITVHQAKGAEFDYVFLAGL 791

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            + +F +                                      +K+  + E  RL YV
Sbjct: 792 QNNIFPN-----------------------------------YMAVKEGNEIEEKRLFYV 816

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ 678
            MTRA   L +       N +K+  
Sbjct: 817 AMTRAKKYLYLSFSEYEHNRRKAKS 841


>gi|262189623|ref|ZP_06048012.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93]
 gi|262034497|gb|EEY52848.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93]
          Length = 471

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 91/248 (36%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  + 
Sbjct: 113 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYP 172

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K    +DF  +I    + ++K         K       I+
Sbjct: 173 RLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK--------GKFRSPWKFIM 224

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++        
Sbjct: 225 VDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 277

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V ++      +    + +S  T + ++  
Sbjct: 278 SRFAHS--------TVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVM 329

Query: 302 IGQVGTVQ 309
           +    +V+
Sbjct: 330 LAPNHSVE 337



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 103/380 (27%), Gaps = 48/380 (12%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L        L   +   +  +          ++R++   D   L  +   
Sbjct: 121 PIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYPRLNSELSL 180

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMAL-------GRFI- 428
             P      + LK+  +I             ++           +           R + 
Sbjct: 181 CWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKGKFRSPWKFIMVDEYQDISPQRLRLLQ 240

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-CGISKFQHVIKY 487
              E +     +            I++      +  T +      +    +         
Sbjct: 241 ALCEQNQGQCNLFA---VGDDWQSIYQFAGSDVDLTTGFASRFAHSTVHHLDTTYRFNDQ 297

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I  + +     +PH     +   K  +Q+ +    N  ++ +   L+   R+     + L
Sbjct: 298 IGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPNHSVENI---LDEINRSTNKLKTVL 354

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               +   +        +     ++  MT H +KG E+  V ++      F  +      
Sbjct: 355 LLGRNHYHKPELLKDWQNRYLSLKLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHL 414

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                  +   P                          E  RL YV +TRA +++ +  +
Sbjct: 415 DDALNQSEDDFPY------------------------AEERRLFYVALTRAKEKVWVTYN 450

Query: 668 SNTSNEKKSNQRTWYDMVYD 687
            N S+  +      Y ++  
Sbjct: 451 GNGSSFVQELLNDDYPVLKQ 470


>gi|24213188|ref|NP_710669.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
 gi|24193905|gb|AAN47687.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601]
          Length = 433

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 137/413 (33%), Gaps = 50/413 (12%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
              G     +   I + +     F    +     L +       ++ +  +Q+ +     
Sbjct: 26  AAAGSGKTSTMVGIIERILVENLFPKESV-----LVLTFSRKAAIEISNRIQKVTDKNS- 79

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKI-RDRFNT 116
             R     ++ L            ++    SP+      +  LKK +++   I  D F  
Sbjct: 80  -IRVQTFHAYCLYALSQWHPKFTLKKPKILSPEEKNQFYRGFLKKERNKIGGIPYDFFWA 138

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +         L K L   Y++ K  N  LDFEDL+    D LK  +        + Q+
Sbjct: 139 ENIPFIQENFSELKKDLEFAYQKFKHNNGFLDFEDLVKMFLDGLKNEEEWTSEPRSLLQK 198

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
              I++DE QDT L Q E ++ L++             ++  VGD+ Q+IYSF G  P+ 
Sbjct: 199 ---IIVDEFQDTDLEQLEFLKLLSQ-----------RASIVVVGDDSQAIYSFRGTSPEA 244

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            L  + + Q           +  L  ++RS  +I+           +            +
Sbjct: 245 FLNFQHLFQ--------PCKVHFLNTNYRSLPEIIHTSSIPIQKNHHKINKEVFPFRHEK 296

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
               +I       L   +     +  +  +    S F              RI+  I   
Sbjct: 297 GFVGKIFIEEAADLIPFLNRAILTSKDDFKILCRSNF--------------RISEYIREG 342

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           I    + +    + ++   + V V    +   +    + ++ + +I  VG  R
Sbjct: 343 IPKRYLMTIHASKGLEFHTVFVDVADGWNAR-LDSTLKTIEEERRILYVGLSR 394


>gi|319950042|ref|ZP_08024010.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319436292|gb|EFV91444.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 511

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/443 (14%), Positives = 127/443 (28%), Gaps = 84/443 (18%)

Query: 7   LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--ILKKAQTLQQASQTQCIEE 64
           +  +          + L +  VS     ++     G  T  +L  A  L     +     
Sbjct: 136 VEPDSRLLTPTA-AFQLAHDVVSRWESPLTTGSNPGTVTRDVLALAGQLSDHLVSTDDLR 194

Query: 65  R-FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
               L+++   T    P++         ++ +++   ++  D    +             
Sbjct: 195 AHPDLITTLIATLPPGPRQKATPTAWLGRTAEIQGHREELADLVDAVA------------ 242

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                             +    LD    +     + +       +     +    +L+D
Sbjct: 243 ---------------ARMRAESALDHASQMALAATVARDHPE---VGLAERRAFRVVLLD 284

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT   Q  ++ SL                + AVGD  QSIY + GA    + R +  
Sbjct: 285 EYQDTGHSQRVLLSSLFG------AGADPAPAVTAVGDPMQSIYGWRGASASNLDRFRED 338

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                   G+   + EL  S+R+  ++LT+ +++ +   +  G         R  + R  
Sbjct: 339 FP---LPGGRPSHLRELTTSWRNPPEVLTLANRITAPLRDRPGSVPVPELRARPGAERAD 395

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
               V L +                          E     LA  +A             
Sbjct: 396 L--RVALLDT------------------------AEDEREWLADTLADR----------- 418

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
               +R  +     VLVR+  D+  I            + V       L D   + D++A
Sbjct: 419 YRAAERAGRVPTAAVLVRRNGDSAAIAEALEA----RGLPVEIVGVGGLLDVPEVADVVA 474

Query: 424 LGRFILSQEDDLSFVCMLKSPLF 446
           L   +       + + +L    F
Sbjct: 475 LLTVVARPGAGPALLRLLSGSRF 497


>gi|167623927|ref|YP_001674221.1| UvrD/REP helicase [Shewanella halifaxensis HAW-EB4]
 gi|167353949|gb|ABZ76562.1| UvrD/REP helicase [Shewanella halifaxensis HAW-EB4]
          Length = 1013

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            + + +       A L L  ++   Y+     +  LDF D+I    ++ +++D       
Sbjct: 557 AKHSAHYNQLRWQAFLHLFSWVITRYQAQLTAHNTLDFSDMIAQALNMAREKDFHQKTAE 616

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +      +I++DE QD S  + +++++L +         +    LF VGD+ Q+IY F G
Sbjct: 617 RF--RYKYIMVDEFQDISHERADLVKALRDS--------NPGCALFCVGDDWQAIYRFTG 666

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
           ++       +                I L  +FR    I  V  +             
Sbjct: 667 SDLSLTTEFEPTFGA--------TQTIMLDKTFRFNNRIEKVASRFIQANPAQLKKQL 716



 Score = 43.8 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 74/311 (23%), Gaps = 40/311 (12%)

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
             ++   +  D F    H    DL+   R      D      +            I++  
Sbjct: 616 ERFRYKYIMVDEFQDISHERA-DLVKALR------DSNPGCALFC---VGDDWQAIYRFT 665

Query: 458 TQRHETETVYE-YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---- 512
                  T +E          + K       I ++       +P      +    +    
Sbjct: 666 GSDLSLTTEFEPTFGATQTIMLDKTFRFNNRIEKVASRFIQANPAQLKKQLKTHSQSDNP 725

Query: 513 ---GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
                         +    + E  + T  +      S+  +                   
Sbjct: 726 EVCLLVNNKQIAIEQTFASIMEVTDKTRADIDCEAVSVMLISRFKSSLKDLSVWQKRYPQ 785

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             +   + H +KG ++  V ++D                              P     +
Sbjct: 786 LSISGFSAHASKGKQADFVIVLDVNDDK----------------------YGFPCKIDSD 823

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
            I+  L+  L      E  RL YV ++RA   + +       +      R++   V    
Sbjct: 824 PILETLLPQLDNYADTEERRLFYVALSRAKQTVFVQAELGKESVFVKELRSYGGDVRCYL 883

Query: 690 HNDERVKKIKL 700
            +   +    L
Sbjct: 884 SDLAPMYNESL 894


>gi|71657390|ref|XP_817211.1| ATP-dependent DNA helicase [Trypanosoma cruzi strain CL Brener]
 gi|70882388|gb|EAN95360.1| ATP-dependent DNA helicase, putative [Trypanosoma cruzi]
          Length = 834

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/435 (14%), Positives = 125/435 (28%), Gaps = 102/435 (23%)

Query: 128 TLAKYLNAHYEEAK-KKNCVLDFEDLIINTNDLLKK------------------------ 162
             A YL   Y+    +++  +DF DL     + L+                         
Sbjct: 190 RQAAYLFRFYQAMLHEQHNAVDFGDLEQMFLETLRPVGRQEQPSEEGVEGNGGSNSNSLM 249

Query: 163 -----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
                  +S+ +  ++  +  HI++DE QD + +Q E +  L  D             + 
Sbjct: 250 SVVPPPRLSSPVALQLRAQYTHIVVDEFQDLNEVQLECLALLAGD----------TCRVT 299

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD  Q IY++ GA      R +    +          I+ L  ++RS+ +I+  V+ V
Sbjct: 300 CVGDPNQCIYTWRGATTNSFERWRSRFPQ--------TKIVTLGTNYRSSEEIVNAVNAV 351

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                          + I  +S R      + L                 +W        
Sbjct: 352 ---------------SQISQQSFRGECGRRIILIRC------------PHAWEQMS---- 380

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                      +   +  ++ T       + R ++  DI +L R R+    +        
Sbjct: 381 ----------LLPRVVEELLRT-------RDRGLKYSDIAILCRTRRTVRDVVTALE--- 420

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
              +I V             ++ +++  R  +    +L   C+++    +FS     K  
Sbjct: 421 -RDQIPVCELRPSRPNSKALVRAILSYLRLCVHPHSNLDVECVIRDAPNHFSAAAATKFI 479

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                           A            Y   L  +             L   K +Q+F
Sbjct: 480 FAMQAECLQRRRELSTAKLQCEDSHATYSYYTILRELVHNG--FAHVHERLRTTKPQQKF 537

Query: 518 ISRFGNEVIDVLDEF 532
           +  F        D  
Sbjct: 538 LRNFIEVTTAAHDAL 552


>gi|148643831|ref|YP_001274344.1| UvrD/REP family DNA helicase [Methanobrevibacter smithii ATCC
           35061]
 gi|148552848|gb|ABQ87976.1| DNA helicase, UvrD/REP helicase family [Methanobrevibacter smithii
           ATCC 35061]
          Length = 610

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 91/252 (36%), Gaps = 39/252 (15%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            L +A+   ++Y++    +  +DF D+I  ++ L+KK        Y + +   +IL+DE 
Sbjct: 290 FLKIAEDFYSYYQKYLDMHQQIDFNDMINESSKLIKK--------YGLKKHYRYILVDEY 341

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QDT+   + +I+SL            +   L  VGD+ QSIY F G   +     +   +
Sbjct: 342 QDTTYTNYNLIKSL---------QDKTDAHLTVVGDDWQSIYGFRGTNIEFFSHFEEYFE 392

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                       I +  ++R+  +++ +              S  S   ++         
Sbjct: 393 N--------PQRIFIEKTYRNPQELIDIAGSFIMKNPKQIRKSLKSPKNLKK-------- 436

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                    +         ++E   +    L ++S   ++  R    I+  I    +   
Sbjct: 437 ------PVKIIYPQKNPIEKREMIYNLIKDLSKKSEDVLILGRTNNNINQFIKHRNLVKK 490

Query: 366 GKKRVIQAKDIL 377
           G  +  +   IL
Sbjct: 491 GNLKKDKFLRIL 502



 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 28/131 (21%)

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             + N V   T+H++KGLE+  V +++                           +  P  
Sbjct: 506 DKSMNNVYYRTLHSSKGLEADNVIIINMVDD----------------------YLGFPSK 543

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
              +++++ +          E  RL YVG+TR+ + + +        +K +      +++
Sbjct: 544 LKTHSVLNYVNTKNYDYKYSEERRLFYVGLTRSKNNVYLIS------DKNNPSEFIEELI 597

Query: 686 YDSFHNDERVK 696
            DS  N E ++
Sbjct: 598 DDSLENLEIIE 608


>gi|325919993|ref|ZP_08181974.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Xanthomonas gardneri ATCC 19865]
 gi|325549527|gb|EGD20400.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Xanthomonas gardneri ATCC 19865]
          Length = 362

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 104/326 (31%), Gaps = 20/326 (6%)

Query: 85  ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
             ++  +++P     L    D ++    R   ++  +       L     A     K++ 
Sbjct: 55  TNKKFVERTP--ASPLSHEIDGYLTALARVEEWRTRRRIRLLHALRDDAIARLALLKRQR 112

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            V  ++DL+      L+     A +  ++  +    L+DE QDT   QW +  ++  +  
Sbjct: 113 RVQTYDDLVDGVAHALEGAQAEALV-TRLRAQYAIALVDEFQDTDDRQWAIFSNVFGEGP 171

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
           + +        LF +GD KQ+IY F G + +  L            A        L  +F
Sbjct: 172 LARAADL-EPALFLIGDPKQAIYGFRGGDVRTYL----------AAAVTAELAPPLSHNF 220

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS   +L  +D +++    ++    D       +         +Q              P
Sbjct: 221 RSRPGVLAAIDALYAQAGYSEAFLTDGIAFHPVQPGTKRVDADLQRDGNAAPALTLWRAP 280

Query: 325 QQESWTSYFDSLPQESSASILA-RRIAYTISNMIGTDTI-FSNGKKRVIQAKDILVLVRK 382
           +    +           A  LA       I   +       +      +QA DI VLVR 
Sbjct: 281 EPPLPSKGKPKPWSAGRARELATAACVAAIRGWLAGGRDGTATINGHPLQAGDIAVLVRS 340

Query: 383 RKDTPLITFLTRFLKNDYKISVVGND 408
             +   +      +     I  V   
Sbjct: 341 HGEATRMQQALGAM----GIPAVAAG 362


>gi|261212475|ref|ZP_05926760.1| DNA helicase IV [Vibrio sp. RC341]
 gi|260838406|gb|EEX65062.1| DNA helicase IV [Vibrio sp. RC341]
          Length = 687

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 110/313 (35%), Gaps = 27/313 (8%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           LKN+ GL  +  +   +  L      +V      +S                L++   T 
Sbjct: 264 LKNKIGLEADRLHVNTFHQLGLRILNRVEGKTVMMSPLANDNKLKQAWCIDWLKRHWMTP 323

Query: 61  C----IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                 ++  +     +L        ++   ++        ++L +      ++++R   
Sbjct: 324 TNFKRWQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQLGLSKKELQERLVD 383

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
           ++ F    + L+L       +++  K    +DF  +I    + ++K         K    
Sbjct: 384 HEDFPRLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK--------GKFRSP 435

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
              I++DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++   
Sbjct: 436 WKFIMVDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDL 488

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                    +         ++  L  ++R    I  V ++      N    + +S  T +
Sbjct: 489 TTGFATRFAQS--------TVHHLDTTYRFNDQIGAVANRFIQQNPNQLPKTLNSFKTQK 540

Query: 297 HRSSRIGQVGTVQ 309
            +S  +     V+
Sbjct: 541 QKSVVLASNNAVE 553



 Score = 46.1 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 105/380 (27%), Gaps = 48/380 (12%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L        L   +   +  +          ++R++  +D   L  +   
Sbjct: 337 PIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQLGLSKKELQERLVDHEDFPRLNSELSL 396

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMAL-------GRFI- 428
             P      + LK+  +I             ++           +           R + 
Sbjct: 397 CWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKGKFRSPWKFIMVDEYQDISPQRLRLLQ 456

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-YIQKFANCGISKFQHVIKY 487
              E +     +            I++      +  T +     +     +         
Sbjct: 457 ALCEQNQGQCNLFA---VGDDWQSIYQFAGSDVDLTTGFATRFAQSTVHHLDTTYRFNDQ 513

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I  + +     +P+     +   K  +Q+ +    N  ++ +   L+   R+     + L
Sbjct: 514 IGAVANRFIQQNPNQLPKTLNSFKTQKQKSVVLASNNAVEKI---LDELNRSTNKLKTVL 570

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               +   +        +     ++  MT H +KG E+  V ++      F         
Sbjct: 571 LLGRNHYHKPELLKDWQNRYLSLKIDFMTCHASKGKEADFVIILAVDEGQFP-------- 622

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                 ++ S L +        E  RL YV +TRA +++ +   
Sbjct: 623 ----------------ARVKALHLDSALSQGEDDFAYAEERRLFYVALTRAKEKVWVTFS 666

Query: 668 SNTSNEKKSNQRTWYDMVYD 687
            N S+  +      Y +V  
Sbjct: 667 GNGSSFVQELLNDDYPVVRQ 686


>gi|254578480|ref|XP_002495226.1| ZYRO0B06292p [Zygosaccharomyces rouxii]
 gi|238938116|emb|CAR26293.1| ZYRO0B06292p [Zygosaccharomyces rouxii]
          Length = 712

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 100/576 (17%), Positives = 163/576 (28%), Gaps = 153/576 (26%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY------KIDQEINHILIDEV 185
            +     +  K   V   EDLI N    L                  +      +LIDE 
Sbjct: 164 EVMERLMKIMKDCQVFTNEDLISNAPHYLDHPSDRIDSLEGQCFTRALVDGFKVVLIDEF 223

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD       ++  +  +           + L   GD  QSIY+F G     + R  ++  
Sbjct: 224 QDLFPSVLPMLEKIAAN-----------KQLILFGDSNQSIYNFLGDNKTVIDRLDKL-- 270

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
               + G  F+++ L  +FRST +I++V  KV     +   L++                
Sbjct: 271 ----HTGDNFTVVHLYDNFRSTPEIISVASKVMRHKVDLDELAKKD-------------- 312

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                   +V +  S   P+ +      D L            +   I  ++ +      
Sbjct: 313 --------LVLKDPSGVYPEFQEIGDPLDELEA----------LTEKICMLVCSGATL-- 352

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMAL 424
                    D+ VL R      +I    RF    Y I                ++ L+ L
Sbjct: 353 --------SDVAVLARTNAHVQIIADHLRF----YGIPFRKLTAQPDWISDSRVQFLIGL 400

Query: 425 GRF-------ILSQEDDLSFVC------MLKSPLFNFSEDDIFKICT-QRHETETVYEYI 470
            R        I  + D L+         +  S +       I  +      +  +++ YI
Sbjct: 401 LRTVVLVRRGIFEESDPLAAKRSDFSVIVTLSAIRGVGNQAIQSLFRVCNEKKVSLWNYI 460

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF------------- 517
            +             K I   I +       D    I    +   +              
Sbjct: 461 TEVPKNEWPPAVTNRKKIEGYITMISHLMEEDPLVEIEDPLQLLTRISEAAYSLDFAPMV 520

Query: 518 --ISRFGNEVIDVLDEFLNFTL--RNEQNSYSSLQELI--SELEQYPPTIKRAHS---AN 568
               R  +E    L E           ++  SSL +    S +EQ      +        
Sbjct: 521 IKSEREIHEFKANLQEMFRVMKICSLNRSPESSLADWFLESYVEQGAIQHHQDVEFQSEG 580

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V + T+H++KGLE PVVFL+  G   F                              
Sbjct: 581 LGAVNLSTIHSSKGLEFPVVFLIG-GLNHFPM---------------------------- 611

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                LLYVGMTRA + L +
Sbjct: 612 ------------------EQNLLYVGMTRARNLLYL 629


>gi|297580262|ref|ZP_06942189.1| helicase IV [Vibrio cholerae RC385]
 gi|297535908|gb|EFH74742.1| helicase IV [Vibrio cholerae RC385]
          Length = 699

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 91/248 (36%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  + 
Sbjct: 341 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYP 400

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K    +DF  +I    + ++K         K       I+
Sbjct: 401 RLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK--------GKFRSPWKFIM 452

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++        
Sbjct: 453 VDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 505

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V ++      +    + +S  T + ++  
Sbjct: 506 SRFAHS--------TVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVM 557

Query: 302 IGQVGTVQ 309
           +    +V+
Sbjct: 558 LAPNHSVE 565



 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 103/380 (27%), Gaps = 48/380 (12%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L        L   +   +  +          ++R++   D   L  +   
Sbjct: 349 PIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYPRLNSELSL 408

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMAL-------GRFI- 428
             P      + LK+  +I             ++           +           R + 
Sbjct: 409 CWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKGKFRSPWKFIMVDEYQDISPQRLRLLQ 468

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-CGISKFQHVIKY 487
              E +     +            I++      +  T +      +    +         
Sbjct: 469 ALCEQNQGQCNLFA---VGDDWQSIYQFAGSDVDLTTGFASRFAHSTVHHLDTTYRFNDQ 525

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I  + +     +PH     +   K  +Q+ +    N  ++ +   L+   R+     + L
Sbjct: 526 IGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPNHSVEKI---LDEINRSTNKLKTVL 582

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               +   +        +     ++  MT H +KG E+  V ++      F  +      
Sbjct: 583 LLGRNHYHKPELLKDWQNRYLSLKLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHL 642

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                  +   P                          E  RL YV +TRA +++ +  +
Sbjct: 643 DDALNQSEDDFPY------------------------AEERRLFYVALTRAKEKVWVTYN 678

Query: 668 SNTSNEKKSNQRTWYDMVYD 687
            N S+  +      Y +V  
Sbjct: 679 GNGSSFVQELLNDDYPVVKQ 698


>gi|262164920|ref|ZP_06032658.1| DNA helicase IV [Vibrio mimicus VM223]
 gi|262027300|gb|EEY45967.1| DNA helicase IV [Vibrio mimicus VM223]
          Length = 687

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 94/248 (37%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  F 
Sbjct: 329 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQLSLTKKELQERLVDHDDFP 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K+   +DF  +I    + ++K         K       I+
Sbjct: 389 RLNSELSLCWPCYQAWQQMLKEQNHIDFNIMITRATEYVEK--------GKFRSPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++        
Sbjct: 441 VDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 493

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               +         ++  L  ++R    I TV ++      N    + +S  T + ++  
Sbjct: 494 ARFAQS--------TVHYLDTTYRFNDQIGTVANRFIQQNPNQLPKTLNSFKTQKQKAVV 545

Query: 302 IGQVGTVQ 309
           +    +V+
Sbjct: 546 LASNNSVE 553



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 24/117 (20%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++  MT H +KG E+  V ++      F  +             D   P           
Sbjct: 594 KIDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDGALSQGDDDFPY---------- 643

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                          E   L YV +TRA +++ +  + N S   +      Y ++  
Sbjct: 644 --------------AEERCLFYVALTRAKEKVWVTYNGNGSGFVQELLNDDYPVIRQ 686


>gi|119026181|ref|YP_910026.1| DNA helicase II [Bifidobacterium adolescentis ATCC 15703]
 gi|118765765|dbj|BAF39944.1| probable DNA helicase II [Bifidobacterium adolescentis ATCC 15703]
          Length = 499

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 83/271 (30%), Gaps = 64/271 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K     +DF+D+++ T  L++  +    +   I   I  + +DE QD S +
Sbjct: 180 DVYKAYETEKTNRNEIDFDDILLITCHLIESDED---VAASIRSGITWLTVDEYQDVSPL 236

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++     D           R +  VGD  Q+IYSF GA    +L             
Sbjct: 237 QHRLLTRWLGD----------NRNICVVGDPAQTIYSFAGASSYNLLNFASEF------- 279

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
           G   + + L   +RST  I+   ++V                 ++  S R          
Sbjct: 280 GPLTADVRLNNDYRSTPQIVNYANRVLEASPQR-------ADYLKLNSKRDQGRRV---- 328

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                  +    +S    AR +A  I  ++              
Sbjct: 329 -----------------------AQTVYNSDLEEARGVAARIRRLVDEG----------A 355

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              D  +L R      ++          Y++
Sbjct: 356 SPGDCAILTRVNAQQKILCRALGEQHLRYRV 386



 Score = 46.8 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 107/401 (26%), Gaps = 74/401 (18%)

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            L           +        ++  + V      +      +   + D L         
Sbjct: 151 SLIAPEDYERVCAAIHHQPPAGLEPSQFVDVYKAYETEKTNRNEIDFDDILLITCHLIES 210

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              +A +I + I   T  +  + + +      +L R   D   I  +          S  
Sbjct: 211 DEDVAASIRSGI---TWLTVDEYQDVSPLQHRLLTRWLGDNRNICVV--GDPAQTIYSFA 265

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS----EDDIFKICTQRH 461
           G   + L +     +   L   +    D  S   ++              D  K+ ++R 
Sbjct: 266 GASSYNLLN--FASEFGPLTADVRLNNDYRSTPQIVNYANRVLEASPQRADYLKLNSKRD 323

Query: 462 ETETVYEYIQKFANCGISKFQHVIKYI-------HELIHIAQFCSPHDFFTLILGAKKGR 514
           +   V + +              I+ +        +   + +  +        LG +  R
Sbjct: 324 QGRRVAQTVYNSDLEEARGVAARIRRLVDEGASPGDCAILTRVNAQQKILCRALGEQHLR 383

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
            +     G +         +    + Q   + L+ L +               +   V I
Sbjct: 384 YRVKRDSGWQN--------SALADDAQTRLAMLEALGA-------------GGDVKGVTI 422

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            T+H +KGLE   VFL+     +  +    +  +                          
Sbjct: 423 STIHASKGLEFKHVFLIGCSEGLIPYGSPPEGDL-------------------------- 456

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                     EE  RL+YV +TRA D L +       ++  
Sbjct: 457 ---------LEEERRLMYVAVTRAEDTLDVSYARAREDDGS 488


>gi|254225192|ref|ZP_04918805.1| helicase IV [Vibrio cholerae V51]
 gi|125622291|gb|EAZ50612.1| helicase IV [Vibrio cholerae V51]
          Length = 699

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 91/248 (36%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  + 
Sbjct: 341 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYP 400

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K    +DF  +I    + ++K         K       I+
Sbjct: 401 RLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK--------GKFRSPWKFIM 452

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++        
Sbjct: 453 VDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 505

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V ++      +    + +S  T + ++  
Sbjct: 506 ARFAHS--------TVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVM 557

Query: 302 IGQVGTVQ 309
           +    +V+
Sbjct: 558 LAPNHSVE 565



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 103/380 (27%), Gaps = 48/380 (12%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L        L   +   +  +          ++R++   D   L  +   
Sbjct: 349 PIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYPRLNSELSL 408

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMAL-------GRFI- 428
             P      + LK+  +I             ++           +           R + 
Sbjct: 409 CWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKGKFRSPWKFIMVDEYQDISPQRLRLLQ 468

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-CGISKFQHVIKY 487
              E +     +            I++      +  T +      +    +         
Sbjct: 469 ALCEQNQGQCNLFA---VGDDWQSIYQFAGSDVDLTTGFAARFAHSTVHHLDTTYRFNDQ 525

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I  + +     +PH     +   K  +Q+ +    N  ++ +   L+   R+     + L
Sbjct: 526 IGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPNHSVEKI---LDEINRSTNKLKTVL 582

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               +   +        +     ++  MT H +KG E+  V ++      F  +      
Sbjct: 583 LLGRNHYHKPELLKDWQNRYLSLKLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHL 642

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                  +   P                          E  RL YV +TRA +++ +  +
Sbjct: 643 DDALNQSEDDFPY------------------------AEERRLFYVALTRAKEKVWVTYN 678

Query: 668 SNTSNEKKSNQRTWYDMVYD 687
            N S+  +      Y +V  
Sbjct: 679 GNGSSFVQELLNDDYPVVKQ 698


>gi|167465630|ref|ZP_02330719.1| UvrD/REP helicase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 316

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 94/238 (39%), Gaps = 25/238 (10%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMET-----GNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            + + P     V+  +K  +   E      G   +  K    +          R      
Sbjct: 93  VRQVDPRQILLVTFTSKAAAEMRERLADLPGISAVEAKLVGARTFHSLFLQVIRQEGCED 152

Query: 72  FFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
             LT +  P    K ++     +++ + +  L          +    + + + +  +   
Sbjct: 153 DLLTDQRRPHFIMKRLLKIAGLQEAWEPETALS----RLSAWKSSMLSPEEWPARTSMEQ 208

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
             K +   YE  KK    +DF+D+++  + L  +      +  +I ++  +I++DE QDT
Sbjct: 209 QLKPVLLQYEGWKKAEGKMDFDDILLEAHKLFTRHPE---VLERIRRQYAYIMVDEFQDT 265

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           + +Q++++R + E              L AVGD+ Q+IY+F+GA    +L+ ++    
Sbjct: 266 NPLQYQLVRMIAE----------PDCNLMAVGDDDQTIYTFNGARQAYILQFEQQYPA 313


>gi|229526775|ref|ZP_04416179.1| DNA helicase IV [Vibrio cholerae bv. albensis VL426]
 gi|229336933|gb|EEO01951.1| DNA helicase IV [Vibrio cholerae bv. albensis VL426]
          Length = 699

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 91/248 (36%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  + 
Sbjct: 341 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYP 400

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K    +DF  +I    + ++K         K       I+
Sbjct: 401 RLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK--------GKFRSPWKFIM 452

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++        
Sbjct: 453 VDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 505

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V ++      +    + +S  T + ++  
Sbjct: 506 SRFAHS--------TVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVM 557

Query: 302 IGQVGTVQ 309
           +    +V+
Sbjct: 558 LAPNHSVE 565



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 103/380 (27%), Gaps = 48/380 (12%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L        L   +   +  +          ++R++   D   L  +   
Sbjct: 349 PIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYPRLNSELSL 408

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMAL-------GRFI- 428
             P      + LK+  +I             ++           +           R + 
Sbjct: 409 CWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKGKFRSPWKFIMVDEYQDISPQRLRLLQ 468

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-CGISKFQHVIKY 487
              E +     +            I++      +  T +      +    +         
Sbjct: 469 ALCEQNQGQCNLFA---VGDDWQSIYQFAGSDVDLTTGFASRFAHSTVHHLDTTYRFNDQ 525

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I  + +     +PH     +   K  +Q+ +    N  ++ +   L+   R+     + L
Sbjct: 526 IGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPNHSVEKI---LDEINRSTNKLKTVL 582

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               +   +        +     ++  MT H +KG E+  V ++      F  +      
Sbjct: 583 LLGRNHYHKPELLKDWQNRYLSLKLDFMTCHASKGKEADYVIILAVDDGQFPARVKALHL 642

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                  +   P                          E  RL YV +TRA +++ +  +
Sbjct: 643 DDALNQSEDDFPY------------------------AEERRLFYVALTRAKEKVWVTYN 678

Query: 668 SNTSNEKKSNQRTWYDMVYD 687
            N S+  +      Y +V  
Sbjct: 679 GNGSSFVQELLNDDYPVVKQ 698


>gi|121585589|ref|ZP_01675385.1| helicase IV [Vibrio cholerae 2740-80]
 gi|121725960|ref|ZP_01679260.1| helicase IV [Vibrio cholerae V52]
 gi|147671874|ref|YP_001215495.1| DNA helicase IV [Vibrio cholerae O395]
 gi|153211888|ref|ZP_01947735.1| helicase IV [Vibrio cholerae 1587]
 gi|153818597|ref|ZP_01971264.1| helicase IV [Vibrio cholerae NCTC 8457]
 gi|153820788|ref|ZP_01973455.1| helicase IV [Vibrio cholerae B33]
 gi|153824514|ref|ZP_01977181.1| helicase IV [Vibrio cholerae MZO-2]
 gi|153829185|ref|ZP_01981852.1| helicase IV [Vibrio cholerae 623-39]
 gi|227812284|ref|YP_002812294.1| helicase IV [Vibrio cholerae M66-2]
 gi|229510018|ref|ZP_04399498.1| DNA helicase IV [Vibrio cholerae B33]
 gi|229514169|ref|ZP_04403630.1| DNA helicase IV [Vibrio cholerae TMA 21]
 gi|229516421|ref|ZP_04405868.1| DNA helicase IV [Vibrio cholerae RC9]
 gi|229522282|ref|ZP_04411698.1| DNA helicase IV [Vibrio cholerae TM 11079-80]
 gi|229528406|ref|ZP_04417797.1| DNA helicase IV [Vibrio cholerae 12129(1)]
 gi|229605656|ref|YP_002876360.1| DNA helicase IV [Vibrio cholerae MJ-1236]
 gi|254849875|ref|ZP_05239225.1| helicase IV [Vibrio cholerae MO10]
 gi|255746520|ref|ZP_05420467.1| DNA helicase IV [Vibrio cholera CIRS 101]
 gi|262158892|ref|ZP_06030005.1| DNA helicase IV [Vibrio cholerae INDRE 91/1]
 gi|262168561|ref|ZP_06036257.1| DNA helicase IV [Vibrio cholerae RC27]
 gi|298499514|ref|ZP_07009320.1| helicase IV [Vibrio cholerae MAK 757]
 gi|9658137|gb|AAF96616.1| helicase IV [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550206|gb|EAX60220.1| helicase IV [Vibrio cholerae 2740-80]
 gi|121631725|gb|EAX64093.1| helicase IV [Vibrio cholerae V52]
 gi|124116964|gb|EAY35784.1| helicase IV [Vibrio cholerae 1587]
 gi|126510880|gb|EAZ73474.1| helicase IV [Vibrio cholerae NCTC 8457]
 gi|126521831|gb|EAZ79054.1| helicase IV [Vibrio cholerae B33]
 gi|146314257|gb|ABQ18797.1| helicase IV [Vibrio cholerae O395]
 gi|148875298|gb|EDL73433.1| helicase IV [Vibrio cholerae 623-39]
 gi|149742068|gb|EDM56097.1| helicase IV [Vibrio cholerae MZO-2]
 gi|227011426|gb|ACP07637.1| helicase IV [Vibrio cholerae M66-2]
 gi|227015220|gb|ACP11429.1| helicase IV [Vibrio cholerae O395]
 gi|229334768|gb|EEO00254.1| DNA helicase IV [Vibrio cholerae 12129(1)]
 gi|229340267|gb|EEO05273.1| DNA helicase IV [Vibrio cholerae TM 11079-80]
 gi|229346302|gb|EEO11273.1| DNA helicase IV [Vibrio cholerae RC9]
 gi|229348149|gb|EEO13107.1| DNA helicase IV [Vibrio cholerae TMA 21]
 gi|229352463|gb|EEO17403.1| DNA helicase IV [Vibrio cholerae B33]
 gi|229372142|gb|ACQ62564.1| DNA helicase IV [Vibrio cholerae MJ-1236]
 gi|254845580|gb|EET23994.1| helicase IV [Vibrio cholerae MO10]
 gi|255736274|gb|EET91672.1| DNA helicase IV [Vibrio cholera CIRS 101]
 gi|262023090|gb|EEY41795.1| DNA helicase IV [Vibrio cholerae RC27]
 gi|262029465|gb|EEY48116.1| DNA helicase IV [Vibrio cholerae INDRE 91/1]
 gi|297541495|gb|EFH77546.1| helicase IV [Vibrio cholerae MAK 757]
 gi|327485726|gb|AEA80132.1| DNA helicase IV [Vibrio cholerae LMA3894-4]
          Length = 699

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 91/248 (36%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  + 
Sbjct: 341 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYP 400

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K    +DF  +I    + ++K         K       I+
Sbjct: 401 RLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK--------GKFRSPWKFIM 452

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++        
Sbjct: 453 VDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 505

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V ++      +    + +S  T + ++  
Sbjct: 506 SRFAHS--------TVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVM 557

Query: 302 IGQVGTVQ 309
           +    +V+
Sbjct: 558 LAPNHSVE 565



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 103/380 (27%), Gaps = 48/380 (12%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L        L   +   +  +          ++R++   D   L  +   
Sbjct: 349 PIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYPRLNSELSL 408

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMAL-------GRFI- 428
             P      + LK+  +I             ++           +           R + 
Sbjct: 409 CWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKGKFRSPWKFIMVDEYQDISPQRLRLLQ 468

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-CGISKFQHVIKY 487
              E +     +            I++      +  T +      +    +         
Sbjct: 469 ALCEQNQGQCNLFA---VGDDWQSIYQFAGSDVDLTTGFASRFAHSTVHHLDTTYRFNDQ 525

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I  + +     +PH     +   K  +Q+ +    N  ++ +   L+   R+     + L
Sbjct: 526 IGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPNHSVEKI---LDEINRSTNKLKTVL 582

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               +   +        +     ++  MT H +KG E+  V ++      F  +      
Sbjct: 583 LLGRNHYHKPELLKDWQNRYLSLKLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHL 642

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                  +   P                          E  RL YV +TRA +++ +  +
Sbjct: 643 DDALNQSEDDFPY------------------------AEERRLFYVALTRAKEKVWVTYN 678

Query: 668 SNTSNEKKSNQRTWYDMVYD 687
            N S+  +      Y +V  
Sbjct: 679 GNGSSFVQELLNDDYPVVKQ 698


>gi|254510274|ref|ZP_05122341.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
 gi|221533985|gb|EEE36973.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11]
          Length = 971

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 16/195 (8%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 + +  K+     A L++ + +   Y+   +    +DFED+I+      +     
Sbjct: 535 VPDCEAKADKLKLGGRARAFLSIFEPVYREYQSRLEGEGRIDFEDMILRACTYAED---- 590

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                K      HIL+DE QD S  +  ++++L      G         +FAVGD+ QSI
Sbjct: 591 ----GKYKSPFKHILVDEFQDISKSRGRLVKALKAQHPDG--------RVFAVGDDWQSI 638

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           + F G++   + R                  ++L  +FRS   I     K          
Sbjct: 639 FRFAGSDINLMRRFGDEFGGTFDGQTGVHRTVDLGRTFRSVDQIAEAAMKFVLQNPAQLK 698

Query: 287 LSEDSTTTIRHRSSR 301
            +  S    + ++ +
Sbjct: 699 KTVMSAGVAKSQALK 713



 Score = 41.4 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 60/237 (25%), Gaps = 27/237 (11%)

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            +S       D             T            + +    +  I E        +P
Sbjct: 635 WQSIFRFAGSDINLMRRFGDEFGGTFDGQTGVHRTVDLGRTFRSVDQIAEAAMKFVLQNP 694

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS----LQELISELEQ 556
                 ++ A   + Q +        D   +  +       N        L      L  
Sbjct: 695 AQLKKTVMSAGVAKSQALKVVPTFRHDADAKLKDTLRALAANDGDQISVLLLGRYRNLRP 754

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
              T+ R      + +   T+H +KGLE+  V ++                         
Sbjct: 755 DNLTVLRREFPCLD-ISYKTIHASKGLEADHVIVLGLHRGR------------------- 794

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                 P     + ++  +    +     E  R+ YV +TRA   + +   ++  + 
Sbjct: 795 ---TGFPSEIVDDPLLELVSPEAEPFENAEERRVFYVALTRARHTVTLMSSASKQSA 848


>gi|262173932|ref|ZP_06041609.1| DNA helicase IV [Vibrio mimicus MB-451]
 gi|261891290|gb|EEY37277.1| DNA helicase IV [Vibrio mimicus MB-451]
          Length = 687

 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 94/248 (37%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  F 
Sbjct: 329 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQLSLTKKELQERLVDHDDFP 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K+   +DF  +I    + ++K         K       I+
Sbjct: 389 RLNSELSLCWPCYQAWQQMLKEQNHIDFNIMITRATEYVEK--------GKFRSPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++        
Sbjct: 441 VDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 493

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               +         ++  L  ++R    I TV ++      N    + +S  T + ++  
Sbjct: 494 ARFAQS--------TVHYLDTTYRFNDQIGTVANRFIQQNPNQLPKTLNSFKTQKQKAVV 545

Query: 302 IGQVGTVQ 309
           +    +V+
Sbjct: 546 LASNNSVE 553



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 24/117 (20%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++  MT H +KG E+  V ++      F  +             D   P           
Sbjct: 594 KIDFMTCHASKGKEADYVVILAVDEGQFPARVKALHLDGALSQGDDDFPY---------- 643

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                          E  RL YV +TRA +++ +  + N S   +      Y ++  
Sbjct: 644 --------------AEERRLFYVALTRAKEKVWVTYNGNGSGFVQELLNDDYPVIRQ 686


>gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 861

 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 57/412 (13%), Positives = 130/412 (31%), Gaps = 71/412 (17%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              ++ +        ++L++ Q + I+           +             A Y+E+ +
Sbjct: 145 EFYSESLIDDYKRTIQRLEREQSKQIEKLFYNYNTLATEDLSDFWAHGHEWIARYDESLQ 204

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               +DF DLI   + L +  D    IR +      +I +DE+QDT  ++++V+  L E 
Sbjct: 205 SVHGVDFTDLICGVHRLFQNPD----IRERWRSHYQYISVDEMQDTGSLEYKVMEMLWE- 259

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +   GD  Q+IY + G++P  +L       +           I    
Sbjct: 260 ----------GNHVLLCGDYFQTIYEWRGSDPFCLLEA---FTRDFNPLK-----IIFYK 301

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS   +                       T+  ++ +      V      + + +S  
Sbjct: 302 NYRSNRTL----------------------FTMAFKTLQNMFPQLVGTVYDEMPEANSAS 339

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
           +          +   +        + I   I  +               +   I VLVR 
Sbjct: 340 DGAPVLVKDCRNEYTES-------KFIYDRICAL--------------PKNASIGVLVRD 378

Query: 383 RKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            +    ++        D     +   +  D +       IKD+MA  + +++  D +S  
Sbjct: 379 NRKAQRLSEQFERYNQDKPESERRPFMIIDEYKFFRRQEIKDIMAYFKLLMNPNDAVSAK 438

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETV-YEYIQKFANCGISKFQHVIKYIH 489
            ++K  +    +  I  I + ++ +  +               +  ++  + 
Sbjct: 439 RIIKRYVSGIGDARIRDIESPKNRSVGLKLTDFMDMPIFEAEPYAKLVAGLE 490



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 67/231 (29%), Gaps = 38/231 (16%)

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           I   R              N   + F  +   +  L       +P +    I+       
Sbjct: 653 IYAVRENIMPTTTDRMVAINQYKAAFTTIASQMATLRRKMHTDNPTELLAYIMNQMGVLD 712

Query: 516 QFISRFGNEVIDVLDEFLNFT--LRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEV 572
            + S      ++ + +       L  E    + L  L   L+    T  +    +  +++
Sbjct: 713 YYKSHGEMAKVEHIRDLYRIMESLDKEYEGTTGLARLNHILQLAALTAGEPQQMSKQSKI 772

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            I+TVH AKG E   VFL       F                                  
Sbjct: 773 PIITVHQAKGSEFDHVFLAGMNQGTFPSFMSL---------------------------- 804

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                  ++  ++E  RL YV +TR   +L+I   + +   + +    + D
Sbjct: 805 -------REGNEDEEKRLFYVAITRPKQELVITYTNESQRGQGTAPSAFLD 848


>gi|297581208|ref|ZP_06943132.1| superfamily II DNA helicase [Vibrio cholerae RC385]
 gi|297534524|gb|EFH73361.1| superfamily II DNA helicase [Vibrio cholerae RC385]
          Length = 1756

 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 115/356 (32%), Gaps = 48/356 (13%)

Query: 147  LDFEDLIINTNDLLKKRD-----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            ++F  +I +   LLK             R ++   + ++L+DE QD    Q+++I +L  
Sbjct: 1219 INFTQVIDDAIRLLKGEQSQLGLELEEQRERLLGGLQYLLVDEYQDIDEQQYQLIAALVG 1278

Query: 202  DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                 +    +   L AVGD+ QSIY F  A    + R ++  Q           I  L 
Sbjct: 1279 K---SEEDEETRLHLMAVGDDDQSIYGFRKANVDFIRRFEQDYQ---------AQIHYLT 1326

Query: 262  LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             ++RSTA I+   + +    ++    S      I          G  +L E    +    
Sbjct: 1327 WNYRSTAHIINTANHLIENNKDRMKKS--HPIVIDKLRQLEPLGGRWELLEPSKGRV--- 1381

Query: 322  CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                          +   S A+  A  +   I  +   D+              I VL R
Sbjct: 1382 -------------IIQSCSDAAQQAAEVVRQIKLICENDS--------SCSLDSIAVLAR 1420

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
               +   + ++   L +         D+         ++L++  R++  Q   L     L
Sbjct: 1421 YGIEKDELAWVRSALTDANIPCRFTLDKEQSFPIHRCRELLSYLRWLQKQGYQLMTAQQL 1480

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
              PL       I +          +    Q           H + ++ E ++  + 
Sbjct: 1481 TEPL-----PPIEQANRWEKLLYELIYQWQDSQGEQALSAHHFMMFLQEYLNEQRR 1531



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 69/248 (27%), Gaps = 48/248 (19%)

Query: 425  GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-SKFQH 483
             + I   +   S   +     +   +D++  + +   +      +           + + 
Sbjct: 1400 IKLICENDSSCSLDSIAVLARYGIEKDELAWVRSALTDANIPCRFTLDKEQSFPIHRCRE 1459

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
            ++ Y+  L             T  L              N    +L E +     ++   
Sbjct: 1460 LLSYLRWLQKQGYQLMTAQQLTEPLPPI--------EQANRWEKLLYELIYQWQDSQGEQ 1511

Query: 544  YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
              S    +  L++Y    +R        V + T+H  KG E   V ++D G Q       
Sbjct: 1512 ALSAHHFMMFLQEYLNEQRRQIRFGKG-VLLSTIHGVKGEEFHHVIVLDGGWQQSFGSS- 1569

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                                 +   EE  RL YV +TRA ++L+
Sbjct: 1570 -------------------------------------QDLHEEERRLFYVALTRARERLV 1592

Query: 664  ICKHSNTS 671
            +    +  
Sbjct: 1593 VMAREDQK 1600


>gi|254285740|ref|ZP_04960703.1| helicase IV [Vibrio cholerae AM-19226]
 gi|150424237|gb|EDN16175.1| helicase IV [Vibrio cholerae AM-19226]
          Length = 699

 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 91/248 (36%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  + 
Sbjct: 341 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYP 400

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K    +DF  +I    + ++K         K       I+
Sbjct: 401 RLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK--------GKFRSPWKFIM 452

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++        
Sbjct: 453 VDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 505

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               +         ++  L  ++R    I  V ++      N    + +S  T + +S  
Sbjct: 506 TRFAQS--------TVHYLDTTYRFNDQIGAVANRFIQQNPNQLPKTLNSFKTQKQKSVV 557

Query: 302 IGQVGTVQ 309
           +     V+
Sbjct: 558 LAPNNAVE 565



 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 24/117 (20%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++  MT H +KG E+  V ++      F  +             +   P           
Sbjct: 606 KIDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDDALNQSEDDFPY---------- 655

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                          E  RL YV +TRA +++ +  + N S   +      Y +V  
Sbjct: 656 --------------AEERRLFYVALTRAKEKVWVTYNGNGSRFVQELLNDDYPVVKQ 698


>gi|167562258|ref|ZP_02355174.1| exodeoxyribonuclease V, beta subunit [Burkholderia oklahomensis
           EO147]
          Length = 537

 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 91/296 (30%), Gaps = 27/296 (9%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +    +      +W      +  +      S+   +      A+ L   ++        +
Sbjct: 230 AAAREHFDAAAGIWRAERGALDALLADAQPSLNQRSHKPEAVAEALDAWARYFEQASAVA 289

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L    L       +  + +   K     +                    +  +      
Sbjct: 290 ALPRAALKLT----QAALEKATKKGGATPRHAFFDVAQALETAVGAVEAAQRARWLSLVA 345

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                  A  ++ K+   V+ F+DL+ N +  L+      W+R  +       LIDE QD
Sbjct: 346 QWLDTAPAELKQRKRTRRVVSFDDLLANLHHALEAHP---WLRETLRARYPAALIDEFQD 402

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T  +Q+ +  ++                LF VGD KQ+IYSF  A+              
Sbjct: 403 TDPLQFAIFDTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTY 442

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                +  +   L ++ RST  I+   ++VFS    A  L       +R  +    
Sbjct: 443 LAARARASARYTLAVNQRSTPAIVDACNRVFSANARAFVLDGLDYEPVRAGARARA 498


>gi|161582042|ref|NP_233104.2| DNA helicase IV [Vibrio cholerae O1 biovar eltor str. N16961]
          Length = 687

 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 91/248 (36%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  + 
Sbjct: 329 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYP 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K    +DF  +I    + ++K         K       I+
Sbjct: 389 RLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK--------GKFRSPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++        
Sbjct: 441 VDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 493

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V ++      +    + +S  T + ++  
Sbjct: 494 SRFAHS--------TVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVM 545

Query: 302 IGQVGTVQ 309
           +    +V+
Sbjct: 546 LAPNHSVE 553



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 103/380 (27%), Gaps = 48/380 (12%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L        L   +   +  +          ++R++   D   L  +   
Sbjct: 337 PIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVDHDDYPRLNSELSL 396

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMAL-------GRFI- 428
             P      + LK+  +I             ++           +           R + 
Sbjct: 397 CWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKGKFRSPWKFIMVDEYQDISPQRLRLLQ 456

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-CGISKFQHVIKY 487
              E +     +            I++      +  T +      +    +         
Sbjct: 457 ALCEQNQGQCNLFA---VGDDWQSIYQFAGSDVDLTTGFASRFAHSTVHHLDTTYRFNDQ 513

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I  + +     +PH     +   K  +Q+ +    N  ++ +   L+   R+     + L
Sbjct: 514 IGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPNHSVEKI---LDEINRSTNKLKTVL 570

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               +   +        +     ++  MT H +KG E+  V ++      F  +      
Sbjct: 571 LLGRNHYHKPELLKDWQNRYLSLKLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHL 630

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                  +   P                          E  RL YV +TRA +++ +  +
Sbjct: 631 DDALNQSEDDFPY------------------------AEERRLFYVALTRAKEKVWVTYN 666

Query: 668 SNTSNEKKSNQRTWYDMVYD 687
            N S+  +      Y +V  
Sbjct: 667 GNGSSFVQELLNDDYPVVKQ 686


>gi|167569499|ref|ZP_02362373.1| exodeoxyribonuclease V, beta subunit [Burkholderia oklahomensis
           C6786]
          Length = 554

 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 91/296 (30%), Gaps = 27/296 (9%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +    +      +W      +  +      S+   +      A+ L   ++        +
Sbjct: 230 AAAREHFDAAAGIWRAERGALDALLADAQPSLNQRSHKPEAVAEALDAWARYFEQASAVA 289

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L    L       +  + +   K     +                    +  +      
Sbjct: 290 ALPRAALKLT----QAALEKATKKGGATPRHAFFDVAQALETAVGAVEAAQRARWLSLVA 345

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                  A  ++ K+   V+ F+DL+ N +  L+      W+R  +       LIDE QD
Sbjct: 346 QWLDTAPAELKQRKRTRRVVSFDDLLANLHHALEAHP---WLRETLRARYPAALIDEFQD 402

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T  +Q+ +  ++                LF VGD KQ+IYSF  A+              
Sbjct: 403 TDPLQFAIFDTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTY 442

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                +  +   L ++ RST  I+   ++VFS    A  L       +R  +    
Sbjct: 443 LAARARASARYTLAVNQRSTPAIVDACNRVFSANARAFVLDGLDYEPVRAGARARA 498


>gi|154488989|ref|ZP_02029838.1| hypothetical protein BIFADO_02299 [Bifidobacterium adolescentis
           L2-32]
 gi|154083126|gb|EDN82171.1| hypothetical protein BIFADO_02299 [Bifidobacterium adolescentis
           L2-32]
          Length = 502

 Score =  118 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 81/271 (29%), Gaps = 64/271 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K     +DF+D+++ T  L++  +    +   I   I  + +DE QD S +
Sbjct: 183 DVYKAYETEKINRNEIDFDDILLITCHLIESDED---VAASIRSGITWLTVDEYQDVSPL 239

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++     D           R +  VGD  Q+IYSF GA    +L             
Sbjct: 240 QHRLLTRWLGD----------NRNICVVGDPAQTIYSFAGASSYNLLNFASEF------- 282

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
           G   + + L   +RST  I+   ++V                    + +     G     
Sbjct: 283 GPLTADVRLNNDYRSTPQIVNYANRVLEASPQRADY---------LKLNSKRDPGRRVSQ 333

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
               S  +                          AR +A  I  ++              
Sbjct: 334 TVYNSDLE-------------------------EARGVAARIRRLVDEG----------A 358

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              D  +L R      ++          Y++
Sbjct: 359 SPGDCAILTRVNAQQKILCRALGEQHLRYRV 389



 Score = 45.3 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 51/394 (12%), Positives = 107/394 (27%), Gaps = 60/394 (15%)

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            L           +        ++  + V      +      +   + D L         
Sbjct: 154 SLIAPEDYERVCAAIHHQPPAGLEPSQFVDVYKAYETEKINRNEIDFDDILLITCHLIES 213

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              +A +I + I   T+        +Q + +   +   ++  ++    + + +    S  
Sbjct: 214 DEDVAASIRSGITWLTVDEYQDVSPLQHRLLTRWLGDNRNICVVGDPAQTIYSFAGASSY 273

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML-KSPLFNFSEDDIFKICTQRHETE 464
               F         D+     +  + +       +L  SP          K    R  ++
Sbjct: 274 NLLNFASEFGPLTADVRLNNDYRSTPQIVNYANRVLEASPQRADYLKLNSKRDPGRRVSQ 333

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD---FFTLILGAKKGRQQFISRF 521
           TVY    + A    ++ + ++         A     +         LG +  R +     
Sbjct: 334 TVYNSDLEEARGVAARIRRLVDEGASPGDCAILTRVNAQQKILCRALGEQHLRYRVKRDS 393

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
           G +         +    + Q   + L+ L +               +   V I T+H +K
Sbjct: 394 GWQN--------SALADDAQTRLAMLEALGA-------------GGDVKGVTISTIHASK 432

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VFL+     +  +                                       + 
Sbjct: 433 GLEFKHVFLIGCSEGLIPYGSP-----------------------------------HEG 457

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
              EE  RL+YV +TRA D L +       ++  
Sbjct: 458 DLLEEERRLMYVAVTRAEDTLDVSYARAREDDGS 491


>gi|258623933|ref|ZP_05718886.1| helicase IV [Vibrio mimicus VM603]
 gi|258583727|gb|EEW08523.1| helicase IV [Vibrio mimicus VM603]
          Length = 687

 Score =  118 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 94/248 (37%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  F 
Sbjct: 329 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQLSLTKKELQERLVDHDDFP 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K+   +DF  +I    + ++K         K       I+
Sbjct: 389 RLNSELSLCWPCYQAWQQMLKEQNHIDFNIMITRATEYVEK--------GKFRSPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++        
Sbjct: 441 VDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 493

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               +         ++  L  ++R    I TV ++      N    + +S  T + ++  
Sbjct: 494 ARFAQS--------TVHYLDTTYRFNDQIGTVANRFIQQNPNQLPKTLNSFKTQKQKAVV 545

Query: 302 IGQVGTVQ 309
           +    +V+
Sbjct: 546 LASNNSVE 553



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 24/117 (20%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++  MT H +KG E+  V ++      F  +             D   P           
Sbjct: 594 KIDFMTCHASKGKEADYVIILAVDEGQFPARVKALHLDGALSQGDDDFPY---------- 643

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                          E  RL YV +TRA +++ +  + N S   +      Y ++  
Sbjct: 644 --------------AEERRLFYVALTRAKEKVWVTYNGNGSGFVQELLNDDYPVIRQ 686


>gi|255712729|ref|XP_002552647.1| KLTH0C09856p [Lachancea thermotolerans]
 gi|238934026|emb|CAR22209.1| KLTH0C09856p [Lachancea thermotolerans]
          Length = 713

 Score =  118 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 85/537 (15%), Positives = 162/537 (30%), Gaps = 121/537 (22%)

Query: 120 FKSTLASLTLAKYLNAHYEEA----------------KKKNCVLDFEDLIINTNDLLK-- 161
            + T  +  + + L   Y+                   K + V   E+LI      L+  
Sbjct: 144 RRGTTLTPKMFERLFREYQAKGTVNEKDAAMEQIVTIMKASKVFTNEELISLATKYLRSG 203

Query: 162 ---KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
              +      +   +  +   +++DE QD           L        +  S  + LF 
Sbjct: 204 AANQASELPSMTNGLLHKYKVVIVDEYQD-----------LFPSLGPFLSAISQNKQLFL 252

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
            GD  QSIY F G + + V+R     +       +   +  L  +FRST +I    + V 
Sbjct: 253 FGDPHQSIYGFLG-DNRSVIRFLESMR-----PPENLKVFHLYDNFRSTPEITRWANAVA 306

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                A            + +    +   ++              P         + L  
Sbjct: 307 GDVSRA---------VTNNNAFFSKEPMGIE--------------PSLVDIADPLEELEI 343

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                     I   I  ++             ++  DI VL R       +        +
Sbjct: 344 ----------ITDKICQLVSN----------SVKLSDIAVLTRTNAQLKAVGDHF----S 379

Query: 399 DYKISVVGNDRFI-LTDHLAIKDLMALG----------RFILSQEDDLSFVCMLK--SPL 445
            Y I                IK L+ L           RF+       S   ++   S L
Sbjct: 380 SYGIPTEKLTAQPDWISDKNIKFLVDLLKTCMLVSREKRFVEGAGQHQSDFSVIVTLSSL 439

Query: 446 FNFSEDDIFKIC-TQRHETETVYEYIQKFANC-----GISKFQHVIKYIHELIHIAQFCS 499
              S   I  +    +    +++ +I +           ++ +  ++++  L+   +   
Sbjct: 440 KGVSNQSIQTLFGEAQKANISLWNFISQSRQWPTGVSNRTRIESFVRHLEPLLEYLESSQ 499

Query: 500 PHDFFT------LILGAKKGR-QQFISRFGNEV-IDVLDEFLNFTLRNEQNSYS--SLQE 549
           P    +       +      +  +  +    E+  + L E L              SL E
Sbjct: 500 PLTAISIISRLVTVSHQIGFKPDEIKNENDLEIFREHLIEMLGVLKLCSSTRPQNVSLTE 559

Query: 550 LI--SELEQYPPTIKRAHSANHN-----EVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
               + ++Q+   I+ A +   N      V+I T+H++KGLE PVVFL  + +  F 
Sbjct: 560 WFLETWMDQHSSFIQHAANERSNIHDLGAVKISTIHSSKGLEFPVVFLSGSSNSNFP 616


>gi|289806320|ref|ZP_06536949.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 212

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 72/209 (34%), Gaps = 19/209 (9%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q       D      +    L        +     + K++   L F+D++   +  L+  
Sbjct: 6   QHPLFVAIDNLLGEPLSIKDLVLTRALSEIRGTVAQEKRRRGELGFDDMLSRLDTALR-S 64

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           +    +   I       +IDE QDT   Q+ + R +          H     L  +GD K
Sbjct: 65  ESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWR--------HQPDTALLLIGDPK 116

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IY+F GA+    ++ +       T          L  ++RS   ++  V+K+FS   +
Sbjct: 117 QAIYAFRGADIFTYMKARSEVSAHYT----------LDTNWRSAPGMVNSVNKLFSQMND 166

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           A    +   + ++           V    
Sbjct: 167 AFMFRDIPFSPVKFAPRNQSLQFKVNDAP 195


>gi|212703872|ref|ZP_03312000.1| hypothetical protein DESPIG_01924 [Desulfovibrio piger ATCC 29098]
 gi|212672689|gb|EEB33172.1| hypothetical protein DESPIG_01924 [Desulfovibrio piger ATCC 29098]
          Length = 1234

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 91/704 (12%), Positives = 168/704 (23%), Gaps = 150/704 (21%)

Query: 8    SLNESYEL-IYKDLWPLPYFQVSD-INKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
                  E    + LW    +     +                + A+T++  S      + 
Sbjct: 658  HPESREERKALRRLWDRLQWAREQGLPASELPGDLRAAVADWQAARTVRSQSPLLDYADL 717

Query: 66   FSLLSSFFLTQKFT-PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
                      ++    + ++    +      L       Q    +             T 
Sbjct: 718  LEFFLFHLRARQGEDIRPDLEHSLLPPACRALLAAAVTEQHRPARTDASSPATSAGPDTT 777

Query: 125  ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                 A +                   L+           +    R        H+L+DE
Sbjct: 778  TDRHEAPHKGRAVPRQMS---------LLGMVAATAAPGPLPVPSRRASSLPWRHVLVDE 828

Query: 185  VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            VQD S +Q  +IR+L  +   G          F +GD  Q+IY F GA  +     + + 
Sbjct: 829  VQDLSPVQLRLIRALLPEDGNG---------FFGIGDPDQAIYGFRGASGQSEDSLRALW 879

Query: 245  QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                        +  L  S+R++  +L +   +     +   L        R        
Sbjct: 880  P--------SLRVCRLGQSYRASQGVLDMAQSLLQGRGHCGALQAMRREQARLHLFSAPD 931

Query: 305  VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT----- 359
                                                     AR IA  I  ++G      
Sbjct: 932  -------------------------------------QQAEARWIAGRIRQLLGATAHTL 954

Query: 360  --DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                   +     +   D+ VLVR +   P    + R       I      +    D   
Sbjct: 955  MDQIAQEDELAGTLSPGDVAVLVRLKAQIP----VIRRALEQEGIPCAAPAQE---DCWQ 1007

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
                 A+ R  +++    + V            DD+  I       E   +         
Sbjct: 1008 DPLCAAVLRLAIARGQGEAPVPA----GDGAEGDDLLPI------LEQALDLPPDAPLPD 1057

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                Q  +     L       +               +  + + G +      E +    
Sbjct: 1058 PQALQARLSGHSRLPAPFWQGTAWKQLCRAWQDCGQWEALVQQLGLQHEA---ELIRA-- 1112

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                                             +V+I+T+H +KGLE   VFL      +
Sbjct: 1113 ------------------------------RSEQVQILTLHASKGLEFQAVFLPGLEEGL 1142

Query: 598  FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
               +    +                                 + +  EE  RL YVG+TR
Sbjct: 1143 LPMRRDLLLENPDDDMSP----------------------AAQAARLEEERRLFYVGLTR 1180

Query: 658  ASDQLIICKHSNT---SNEKKSNQRTWYDMVYDSFHNDERVKKI 698
            A+  L +   +       E      ++  +V D        +  
Sbjct: 1181 AARALYVSHSAGRRLFGRELALAPSSFLPLVRDFCRQSTLARHT 1224


>gi|257054814|ref|YP_003132646.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
 gi|256584686|gb|ACU95819.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
          Length = 694

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 56/415 (13%), Positives = 123/415 (29%), Gaps = 79/415 (19%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
             ++         +          +    + + ++             L+        + 
Sbjct: 65  LAVTFTARAAGELRTRLRHLGVDGAQARTFHAAALR-----------QLRYFWPRVVGDS 113

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS-T 123
            + L+    L         +      +   DL  +++ ++   +   D     +  +   
Sbjct: 114 PWDLIDGNKLRLVGHAANKVGLPTETEVLRDLAGEIEWAKACLVAPDDYPAVARARRRDV 173

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
              +     +   YE+ K    +LDF+DL+++T  +L++      I  +   +    ++D
Sbjct: 174 GHPVERVADVYRTYEQLKNDRRLLDFDDLLLHTTAVLEEN---RGIAEEFRNQYRCFVVD 230

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QD +  Q  ++ +                 +  VGD  Q+IYSF GA P+ +L   R 
Sbjct: 231 EYQDITPAQQRLLDAWLG----------GRDDVTVVGDANQTIYSFGGASPRPLLDFTRR 280

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                       +++ L   +RST  I+ + ++V S        S      +R    R  
Sbjct: 281 YP--------DATVVRLERDYRSTPQIVELANRVISGARGRPAGSG-----LRLVGQRPD 327

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
               V                             +       A  +A  I +++G+    
Sbjct: 328 GPQPV---------------------------FAEYDDEPAEAAAVAQRIRDLVGSG--- 357

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                  I   +I VL R    + +         +D  +    +          +
Sbjct: 358 -------IPVNEIAVLFRVNAQSEVYERAL----SDVGVPYQVHGGERFFARSEV 401



 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 46/176 (26%), Gaps = 40/176 (22%)

Query: 504 FTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTI 561
              +L       +        E    L                 +L   ++EL+Q     
Sbjct: 426 VKRVLAPLGLSDRQPAGGAARERWSGLHALYELAEDLAATVEKPTLMRYVAELDQRASAQ 485

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                   + V + ++H AKGLE   VFLV         +H      +            
Sbjct: 486 HPPTV---DGVTLASLHAAKGLEWDAVFLVGLAEGTVPIQHATTEEAVEEERR------- 535

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                                       L YVG+TRA + L +    + +   + +
Sbjct: 536 ----------------------------LFYVGVTRAREHLSLTWSLSRTPGGRPH 563


>gi|45656320|ref|YP_000406.1| DNA helicase II [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45599554|gb|AAS69043.1| DNA helicase II [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 433

 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 137/413 (33%), Gaps = 50/413 (12%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
              G     +   I + +     F    +     L +       ++ +  +Q+ +     
Sbjct: 26  AAAGSGKTSTMVGIIERILVENLFPKESV-----LVLTFSRKAAIEISNRIQKVTDKNS- 79

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPD-----LKEKLKKSQDEFIKI-RDRFNT 116
             R     ++ L            ++    SP+      +  LKK +++   I  D F  
Sbjct: 80  -IRVQTFHAYCLYALSQWHPKFTLKKPKILSPEEKNQFYRGFLKKERNKIGGIPYDFFWA 138

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +         L K L   Y++ K  N  LDFEDL+    D LK  +        + Q+
Sbjct: 139 ENIPFIQENFSELKKDLEFAYQKFKYNNGFLDFEDLVKMFLDGLKNEEEWTSEPRSLLQK 198

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
              I++DE QDT L Q E ++ L++             ++  VGD+ Q+IYSF G  P+ 
Sbjct: 199 ---IIVDEFQDTDLEQLEFLKLLSQ-----------RASIVVVGDDSQAIYSFRGTSPEA 244

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            L  + + Q           +  L  ++RS  +I+           +            +
Sbjct: 245 FLNFQHLFQ--------PCKVHFLNTNYRSLPEIIHTSSIPIQKNHHKINKEVFPFRHEK 296

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
               +I       L   +     +  +  +    S F              RI+  I   
Sbjct: 297 GFVGKIFIEEAADLIPFLNRAILTSKDDFKILCRSNF--------------RISEYIREG 342

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           I    + +    + ++   + V V    +   +    + ++ + +I  VG  R
Sbjct: 343 IPKRYLMTIHASKGLEFHTVFVDVADGWNAR-LDSTLKTIEEERRILYVGLSR 394


>gi|218458485|ref|ZP_03498576.1| ATP-dependent DNA helicase II protein [Rhizobium etli Kim 5]
          Length = 218

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/266 (16%), Positives = 84/266 (31%), Gaps = 56/266 (21%)

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
           +   P+ +  VGD+ QSIY + GAE   +LR ++              +I+L  ++RST 
Sbjct: 3   SKGEPQNVCCVGDDDQSIYGWRGAEVDNILRFEKDFP--------GAKVIKLERNYRSTE 54

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL     + +  E   G +  +                            +  +  +  
Sbjct: 55  HILGAAAHLIAHNEGRLGKTLFTDR--------------------------ADPDDVKVQ 88

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
             + +DS  +       AR I   I  +     +            D+ +LVR       
Sbjct: 89  VHASWDSEEE-------ARAIGEEIEQLQRGKHLL----------NDMAILVRASFQMRE 131

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                  L     ++          + L I+D MA  R +    DDL+F  ++ +P    
Sbjct: 132 FEDRFVTL----GLNYRVIGGPRFYERLEIRDAMAYFRLVAQPADDLAFERIINTPKRGL 187

Query: 449 SEDDIFKIC-TQRHETETVYEYIQKF 473
            +  +  +    R     +       
Sbjct: 188 GDTTVRALHDYARARDIPMLAAAADM 213


>gi|153800763|ref|ZP_01955349.1| helicase IV [Vibrio cholerae MZO-3]
 gi|124123738|gb|EAY42481.1| helicase IV [Vibrio cholerae MZO-3]
          Length = 699

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 90/248 (36%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  + 
Sbjct: 341 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVEHDDYP 400

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K    +DF  +I    + ++K         K       I+
Sbjct: 401 RLNSELSLCWPCYQAWQQMLKDQNQIDFNIMITRATEYVEK--------GKFRSPWKFIM 452

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  +++ L E        +     LFAVGD+ QSIY F G++        
Sbjct: 453 VDEYQDISPQRLRLLQVLCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 505

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V ++      +    + +S  T + ++  
Sbjct: 506 SRFAHS--------TVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQKQKAVM 557

Query: 302 IGQVGTVQ 309
           +    +V+
Sbjct: 558 LAPNHSVE 565



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 105/380 (27%), Gaps = 48/380 (12%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L        L   +   +  +          ++R+++  D   L  +   
Sbjct: 349 PIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQMGLSKKELQERLVEHDDYPRLNSELSL 408

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMAL-------GRFI- 428
             P      + LK+  +I             ++           +           R + 
Sbjct: 409 CWPCYQAWQQMLKDQNQIDFNIMITRATEYVEKGKFRSPWKFIMVDEYQDISPQRLRLLQ 468

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-CGISKFQHVIKY 487
           +  E +     +            I++      +  T +      +    +         
Sbjct: 469 VLCEQNQGQCNLFA---VGDDWQSIYQFAGSDVDLTTGFASRFAHSTVHHLDTTYRFNDQ 525

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I  + +     +PH     +   K  +Q+ +    N  ++ +   L+   R+     + L
Sbjct: 526 IGAVANRFIQQNPHQLPKTLNSFKTQKQKAVMLAPNHSVEKI---LDEINRSTNKLKTVL 582

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
               +   +        +     ++  MT H +KG E+  V ++      F  +      
Sbjct: 583 LLGRNHYHKPELLKDWQNRYLSLKLDFMTCHASKGKEADYVIILAVDEGQFPARVKALHL 642

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                  +   P                          E  RL YV +TRA +++ +  +
Sbjct: 643 DDALNQSEDDFPY------------------------AEERRLFYVALTRAKEKVWVTYN 678

Query: 668 SNTSNEKKSNQRTWYDMVYD 687
            N S+  +      Y +V  
Sbjct: 679 GNGSSFVQELLNDDYPVVKQ 698


>gi|262275997|ref|ZP_06053806.1| DNA helicase IV [Grimontia hollisae CIP 101886]
 gi|262219805|gb|EEY71121.1| DNA helicase IV [Grimontia hollisae CIP 101886]
          Length = 694

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 85/253 (33%), Gaps = 23/253 (9%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A+ L Q +  +   +     S   LT++    +     ++      L   L     +  
Sbjct: 313 LAENLAQPAVEKRWLKHLEQWSVPGLTRERPLVEQAHDGKLQTW---LWRHLDLLVQQSQ 369

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                    K  +   +   L + +   Y  A K+    DF  LI     LL K+  +  
Sbjct: 370 PATAIRAVIKGDEKAESEFALVQPVLKGYLNALKEQKAQDFNGLIREATKLLSKKSET-- 427

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                    +HI++DE QD S  +  ++ +L           +   +LFAVGD+ Q+IY 
Sbjct: 428 ----FGARYDHIMVDEYQDISPARLALLEALCG------GKRNRAPSLFAVGDDWQAIYR 477

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F G++                       I  L  ++R  + I  V ++   +        
Sbjct: 478 FAGSDVSLTTGFMNRFPA--------GVIRYLDTTYRFNSQIGEVANRFIQVDPQQLNKP 529

Query: 289 EDSTTTIRHRSSR 301
            +S    + ++  
Sbjct: 530 LNSQRIQKKKAVH 542



 Score = 44.9 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 26/184 (14%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                I E+ +      P      +   +  +++ +    +E ID +             
Sbjct: 506 RFNSQIGEVANRFIQVDPQQLNKPLNSQRIQKKKAVHLMPSEAIDSV--LEKLAKSAGDK 563

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
             S L    +   +     +         V  +T H +KGLE+    L+D    VF  + 
Sbjct: 564 GASVLLIGRNNANRPSRLEEWQQGYPSLSVTYVTAHASKGLEADFTLLLDVNEGVFPARS 623

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                       + + L+K   +    E  RL YV +TRA  + 
Sbjct: 624 AT------------------------EGLEAALLKVDGEMEHAEERRLFYVALTRAKHEC 659

Query: 663 IICK 666
            I  
Sbjct: 660 WIFA 663


>gi|294508356|ref|YP_003572414.1| DNA helicase II [Salinibacter ruber M8]
 gi|294344684|emb|CBH25462.1| DNA helicase II [Salinibacter ruber M8]
          Length = 1227

 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 65/462 (14%), Positives = 138/462 (29%), Gaps = 36/462 (7%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y E       LDF+DL++ T DLL+       +R  +  E   +L+DE QDT  +Q+
Sbjct: 306 LRAYGEMLGDRGALDFDDLLVKTRDLLRNHPD---VRADLVDETRAVLVDEFQDTDPVQF 362

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           ++IR L            +   L+ V D+ QS+Y F GA P  +    R    R   + +
Sbjct: 363 DIIRRL----------GEAGAHLYCVADDDQSVYRFRGARPANL----RRYIDRFDCSAE 408

Query: 254 KFSIIELPLSFRSTADILTVVDKVF---SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
           + +   L  ++RS   I  V + V       +    +      T   +          + 
Sbjct: 409 RGTRHVLTTNYRSNRSIYAVAEAVLDADERLKQRGDIRTSDAGTQPVQLVACDDPEA-ER 467

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              +    D   +  + S  +      +  +A   A   A        ++ +      + 
Sbjct: 468 THVLRQLRDWLDDGAERSDLAVLTRWNRRLAALERACLRAGLACETSQSEALLDTPPAQK 527

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH--LAIKDLMALGRFI 428
           + A   +V  R+R     +      L +               +          A    +
Sbjct: 528 LHALLRVVDARRR--GRPLDAPMTELLSHLLPDDTMARLRDFGERSMPDATLWTAFQTVV 585

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            +++   S      +   + +   I  +     E         + A   +     +++  
Sbjct: 586 SNEQARRSAGLDSATDRLDQTYATITNLLQNTQEDGLTIGAFTRTALRQLGDPLQLLRRY 645

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGR-----------QQFISRFGNEVIDVLDEFLNFTL 537
            + +              +L   +             +  +     ++  +  + +   L
Sbjct: 646 ADTLTDPASRPSVRQAGTVLDEWRRAQARDARAGDPPRLLLHHRTPQITRLWRQLVRRAL 705

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
             E +  + L E+   L   P           + V    +  
Sbjct: 706 DLETDPPAPLPEMQEALFARPADEGIPPLGADDVVLTNDLEA 747



 Score = 44.5 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 47/210 (22%), Gaps = 36/210 (17%)

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
            +             +       +L  +     P       L      +  ++        
Sbjct: 1030 DARVFLQVGHTWALRDASPAGDDLRSLLPRALPDRLRQHALYTLIDEEALLTASAGLQPG 1089

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +                 S + L   L       +       + + + T H+AKGLE   
Sbjct: 1090 LARRLAALFAPYADRPLRS-EALADLLAHLALWGEETTPQGEDVITLSTYHSAKGLEFER 1148

Query: 588  VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            V  +D     F                                             + E 
Sbjct: 1149 VVCMDVHDNAFPP-----------------------------------YFARDPEERRES 1173

Query: 648  NRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
             RLLYVGMTRA   L++          +  
Sbjct: 1174 RRLLYVGMTRAERHLVLTYPKRERGYDRRP 1203


>gi|241589959|ref|YP_002979984.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240868671|gb|ACS66330.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 613

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 73/553 (13%), Positives = 157/553 (28%), Gaps = 113/553 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
              A Y E  K+N V+D  D++ +    +   ++           + H+L+DE QD+  I
Sbjct: 144 PFIAAYSEMLKRNRVVDLYDVMRDCALKMTNGELPPL-------PVTHLLVDEFQDSDEI 196

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+  + +  +              +  VGD+ QSIY++  A      +      ++    
Sbjct: 197 QFVWMMAHAK----------RGIPVTIVGDDDQSIYAWRRA---LGYKGMIDFVEQ---- 239

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                II L  ++RS ++IL   D++       +         +          G     
Sbjct: 240 -TGAEIIPLGENYRSHSEILGPADRLIRHNAGQR---------VEKDLVAKRGPGGSTHV 289

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             V + +                   +  + ++  + +   I            G +  I
Sbjct: 290 YAVSAANRQDG--------------EEHDAVALQTQFLVPFILE-FALPEEEQPGGRTAI 334

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           Q +   +L R       +  +        +      +     D   I   + L   + + 
Sbjct: 335 QPEQWAILARTNFMLDTVEAVLDEFNIRSR-----RNGASFWDKDYINTYLQLLVSVETM 389

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
                   +         ED + ++  +R    T+  + ++  +      +   +++  L
Sbjct: 390 SRSGIDHALA---FVGTGEDALSQL-HKRIPGATMAPFFEREFDDYGDIAKIDAEHMRSL 445

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGN------------EVIDVLDEFLNFTLRN 539
             +         +  I G     +       +            +  D + + L      
Sbjct: 446 QQLLVTWRQDALYRKIPGTNTPMRAVNQAIDSAATFLTMGMRPGQYKDRVSKHLTKAADI 505

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +    SL      + +     K     +   V + T+H+ KGLE     +V     +  
Sbjct: 506 LKRRTGSL------VSRVQSVQKPKGKDDPASVGLFTMHSCKGLEFGNTAIVGADKDIIP 559

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                   +                                     +  RL+YV MTRA 
Sbjct: 560 SLGEGSSEV-------------------------------------DERRLMYVAMTRAK 582

Query: 660 DQLIICKHSNTSN 672
           ++L I        
Sbjct: 583 NRLFILHSPANDT 595


>gi|145597048|ref|YP_001161345.1| UvrD/REP helicase [Salinispora tropica CNB-440]
 gi|145306385|gb|ABP56967.1| UvrD/REP helicase [Salinispora tropica CNB-440]
          Length = 1067

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 92/292 (31%), Gaps = 52/292 (17%)

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y    +K  ++D ++L+     LL+       +          I +DE QD   +Q+E
Sbjct: 639 DTYLALLRKQDLIDLDELLTLPLALLRAD---RRLADSYRDRWQWIFVDEYQDVDEVQYE 695

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++R L+           +   L A+GD  Q+IYSF GA+ +  LR  +            
Sbjct: 696 LLRLLS----------PADGNLCAIGDPDQAIYSFRGADVRYFLRFSQDF--------TD 737

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             ++ L  ++RS+A IL    +  +     +G   D                        
Sbjct: 738 ARLVRLNRNYRSSAPILAAAVQAIAPSSLVRGRRLDPARLDP------------------ 779

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                    P    + +   +      A  +   +       + +  I  +G    +   
Sbjct: 780 -------EAPLLGRYAAASVADEAAFVARTVDELVGGLSHRSLDSGRI--DGASTTLSFS 830

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
           DI VL R       I        +   I V       L D   + D+    R
Sbjct: 831 DIAVLYRTDAQAAPIVDAL----SRANIPVQKRSHDRLRDRPGVADIARELR 878



 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 45/176 (25%), Gaps = 34/176 (19%)

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            ++      +     L   +S+L         A       V ++T+H AKGLE PVVFLV 
Sbjct: 922  VDLLTPLARRCGDDLDLFLSQLATGAEVD--ALDPRAQAVTLLTLHAAKGLEFPVVFLVG 979

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                +   +                                            E  RL +
Sbjct: 980  AEDGLLPLRWPGSEP--------------------------------DDDAVAEERRLFF 1007

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            VG+TRA D+L +   +                +                      +
Sbjct: 1008 VGVTRAQDRLYLSHAARRFRHSTEYDCRPSPFLSTIDPGLFERLGEPEPRRPKDRQ 1063


>gi|225351497|ref|ZP_03742520.1| hypothetical protein BIFPSEUDO_03093 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157841|gb|EEG71124.1| hypothetical protein BIFPSEUDO_03093 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 502

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 83/271 (30%), Gaps = 64/271 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K     +DF+D+++    L++  +    +   I   I  + +DE QD S +
Sbjct: 183 DVYKAYEAEKTNRNEIDFDDILLIVCHLMESDEE---VASAIRSNIRWLTVDEYQDVSPL 239

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++               S R +  VGD  Q+IYSF GA    +L             
Sbjct: 240 QHRLLTRWLG----------SNRNICVVGDPAQTIYSFAGASSYSLLNFDSEF------- 282

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
           G   + I L   +RST  I+   ++V +               ++  S R      V+  
Sbjct: 283 GPLTADINLNNDYRSTPQIVNYANRVLAASPQR-------ADYLKLSSERSKGRRVVE-- 333

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                        S    A+ +A  I  ++              
Sbjct: 334 -------------------------TIYGSDWEEAQGVAARIRKLVDAGE---------- 358

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              D  +L R      ++          Y++
Sbjct: 359 SPADCAILTRVNAQQKILCKALAEQHLRYRV 389



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/398 (12%), Positives = 105/398 (26%), Gaps = 60/398 (15%)

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            L           ++       ++  + V      +      +   + D L         
Sbjct: 154 SLIAPEDYARVCAATHRQPPSGLEPSQFVDVYKAYEAEKTNRNEIDFDDILLIVCHLMES 213

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              +A  I + I   T+        +Q + +   +   ++  ++    + + +    S  
Sbjct: 214 DEEVASAIRSNIRWLTVDEYQDVSPLQHRLLTRWLGSNRNICVVGDPAQTIYSFAGASSY 273

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETE 464
               F         D+     +  + +       +L  SP          +    R   E
Sbjct: 274 SLLNFDSEFGPLTADINLNNDYRSTPQIVNYANRVLAASPQRADYLKLSSERSKGRRVVE 333

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD---FFTLILGAKKGRQQFISRF 521
           T+Y    + A    ++ + ++         A     +         L  +  R +     
Sbjct: 334 TIYGSDWEEAQGVAARIRKLVDAGESPADCAILTRVNAQQKILCKALAEQHLRYRVRRDS 393

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
           G +         +    + Q   + L+ L                A+ + V I T+H +K
Sbjct: 394 GWQN--------SALSDDTQTRLAMLEALG-------------VGADLSGVTISTIHASK 432

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VFL+     +  +                                         
Sbjct: 433 GLEFKHVFLIGCSEGLIPYGLP-----------------------------------QDD 457

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
              EE  RL+YV +TRA D L +         +    R
Sbjct: 458 DVLEEERRLMYVAVTRAEDTLDVSYARTREGNEGERAR 495


>gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6]
          Length = 861

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 58/413 (14%), Positives = 131/413 (31%), Gaps = 73/413 (17%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              ++ +        ++L++ Q + I+           +             A Y+E+ +
Sbjct: 145 EFYSESLIDDYKRTIQRLEQEQSKQIEKLFYNYNTLATEDLSDFWAHGHEWIARYDESLQ 204

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               +DF DLI   + L +  D    IR +      +I +DE+QDT  ++++V+  L E 
Sbjct: 205 SVHGVDFTDLICGVHRLFQNPD----IRERWRSRYQYISVDEMQDTGSLEYKVMEMLWE- 259

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP-KRVLREKRINQKRATNAGQKFSIIELP 261
                        +   GD  Q+IY + G++P + +    R              II   
Sbjct: 260 ----------GNHVLLCGDYFQTIYEWRGSDPFRLLEAFTRDF--------NPLKIIF-Y 300

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS   +                       T+  ++ +      V      + + +S 
Sbjct: 301 KNYRSNRTL----------------------FTMAFKTLQNMFPQLVGTVYDEMPEANSA 338

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
            +          +   +        + I   I  +               +   I VLVR
Sbjct: 339 SDGAPVLVKGCRNEYTES-------KFIYDRIGAL--------------PKDASIGVLVR 377

Query: 382 KRKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
             +    ++        D     +   +  D +       IKD+MA  + +++  D +S 
Sbjct: 378 DNRKAQRLSEQFERYNQDKPESERRPFMIIDEYKFFRRQEIKDIMAYFKLLMNSNDAVSA 437

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETV-YEYIQKFANCGISKFQHVIKYIH 489
             ++K  +    +  I  I + ++ +  +               +  ++  + 
Sbjct: 438 KRIIKRYVSGIGDARIRDIESPKNRSVGLKLTDFMDMPIFEAEPYAKLVAGLE 490



 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 68/231 (29%), Gaps = 38/231 (16%)

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           I   R              N   + F  +   +  L       +P +    I+       
Sbjct: 653 IYAVRENIVPTTTNRMVAINQYKAAFTTIASQMATLRRKMHTDNPTELLAYIMNQMGVLD 712

Query: 516 QFISRFGNEVIDVLDEFLNFT--LRNEQNSYSSLQELISELEQYPPTI-KRAHSANHNEV 572
            + S      ++ + +       L  E    + L  L   L+    T  +    +  +++
Sbjct: 713 YYKSHGEMAKVEHIRDLYRIMESLDKEYEGTTGLARLNHILQLAALTAGEPQQMSKQSKI 772

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            I+TVH AKG E   VFL       F                                  
Sbjct: 773 PIITVHQAKGSEFDYVFLAGMNQGTFPSFMSL---------------------------- 804

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                  ++  ++E  RL YV +TR   +L+I   + +   + +   T+ D
Sbjct: 805 -------REGNEDEEKRLFYVAITRPKQELVITYTNESQRGQGTAPSTFLD 848


>gi|190894001|ref|YP_001984295.1| probable ATP-dependent DNA helicase protein [Rhizobium etli CIAT
           652]
 gi|190699662|gb|ACE93745.1| probable ATP-dependent DNA helicase protein [Rhizobium etli CIAT
           652]
          Length = 594

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/558 (12%), Positives = 130/558 (23%), Gaps = 136/558 (24%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y E  +    LDF  ++  +  +L++     ++   I      +L+DE QDT+ +Q  + 
Sbjct: 169 YWEFVRARGFLDFAMILFYSLRILREHP---FVARGIAARFEWLLVDEFQDTTDVQLAIF 225

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           R L                 F VGD  QSI SF GA P                      
Sbjct: 226 RELHRHLTT---------KFFMVGDHNQSIMSFAGARPDLAQEFATEIGAELD------- 269

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L  +FRS   ++     + +                                     
Sbjct: 270 -YSLTANFRSAPGVVNTAHTLIATNPRMHS---------------------------EGK 301

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
             D          +   +++ +                            +   I+  + 
Sbjct: 302 AKDFDAKVTYVHVSQPLNAITE----------------------HFLPMLQDEGIELGNA 339

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL- 435
            VL         +    R       I V G           +  L          E  L 
Sbjct: 340 AVLAPWWTHLIPVARALREF----DIPVFGPGARPYRRRRLLAGLAEQLGACAESEHFLG 395

Query: 436 --SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
                  L   + + +    F + +       +    +  A                   
Sbjct: 396 LPGVEKALFRLIGDITGATRFDVFSYAGRRTALALIYRARACATAHPGGKAW-------- 447

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                  +     I           +             L  +          ++    +
Sbjct: 448 ------LYQIAAEIAEQLYTDGWVPAPPT--------ALLEASAD---EMVRDMRANRVD 490

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           LE    +     +     ++++T+H +KG E   V L+        H             
Sbjct: 491 LENLAISDMGLFANPEKALKLITMHNSKGREFDAVALISMNYGHLPHFSSTT-------- 542

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                      +   +E  RL YVG+TRA   L++    +    
Sbjct: 543 ---------------------------QEQYDEARRLFYVGITRAKKVLLVASDFSDRRN 575

Query: 674 KKSNQRTWYDMVYDSFHN 691
           +     T   ++     +
Sbjct: 576 RPCPFITEAGLMLGGSED 593


>gi|315181667|gb|ADT88580.1| helicase IV [Vibrio furnissii NCTC 11218]
          Length = 687

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 94/248 (37%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      +I+ R   +  + 
Sbjct: 329 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQLCISKKEIQQRLVEHPDYA 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K++  +DF  +I    D ++K         K D     I+
Sbjct: 389 RLNSELSLTWPCYQAWQQMLKESNQIDFNIMISRATDYVRK--------GKFDSPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  + E+I+SL E          +   LFAVGD+ QSIY F G++        
Sbjct: 441 IDEYQDISPQRLELIQSLCE-------QKPNHTNLFAVGDDWQSIYQFAGSDVNLTTDFS 493

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I +V ++      +    + +S  T + ++  
Sbjct: 494 ARFPHS--------TVHYLDTTYRFNDQIGSVANRFVQENPSQVPKALNSFKTQKQKAVY 545

Query: 302 IGQVGTVQ 309
           +     V+
Sbjct: 546 VAPSNHVE 553



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 41/144 (28%), Gaps = 24/144 (16%)

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +++ L+   R      + L    +   +        +      +  MT H +KG E+  
Sbjct: 551 HVEKVLDQLNRQASGMKTVLLLGRNHYHKPELLRDWQNHYLSLRIEFMTCHASKGKEADY 610

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V ++      F  +                 P                          E 
Sbjct: 611 VIVLAVDEGQFPARVKSLHLDSALTQSSDRFPY------------------------AEE 646

Query: 648 NRLLYVGMTRASDQLIICKHSNTS 671
            RL YV MTRA D++ I    N S
Sbjct: 647 RRLFYVAMTRAKDKVWITHSGNGS 670


>gi|330977542|gb|EGH77487.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 575

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 27/248 (10%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
           + L   +     E          LT +   +       ++           ++  +    
Sbjct: 304 EKLAAWAADDTQEALDLGTGFTRLTPEGIAEAWKSEPPVHPAF--------EAMAQLKAA 355

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            D                 A++++A +EE K++   + F+D+++  +  L        + 
Sbjct: 356 LDGLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL-HGAGGERLA 410

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             I ++    LIDE QDT  +Q+ +  S+          +     LF +GD KQ+IY+F 
Sbjct: 411 TLIREQFPVALIDEFQDTDPVQYRIFDSIYR-----LEANDEQTGLFLIGDPKQAIYAFR 465

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+    LR ++                 L  ++RS+  ++  V+ VF+  E  +     
Sbjct: 466 GADIYTYLRARQA---------TDGRWHTLDTNYRSSHAMVESVNHVFTRAEQREQGRGA 516

Query: 291 STTTIRHR 298
                 H 
Sbjct: 517 FLFRDEHG 524


>gi|261251138|ref|ZP_05943712.1| DNA helicase IV [Vibrio orientalis CIP 102891]
 gi|260938011|gb|EEX93999.1| DNA helicase IV [Vibrio orientalis CIP 102891]
          Length = 688

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 78/238 (32%), Gaps = 22/238 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  S     +L        ++   ++         +L        +++        + 
Sbjct: 329 WQKHLSKWPIAYLAGDEELGSHVENPKLIAWLEKQMSQLATMGLTKKELQQLLVDSSEYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L       +++  K+   +DF  +I      +K          K      +I+
Sbjct: 389 RLNSELGLVWPCYQAWQQQLKEQGHIDFNLMISKATQHVKS--------GKFKSPWRYIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  + +++ +L +              LFAVGD+ QSIY F G++       +
Sbjct: 441 IDEYQDISPQRLQLVEALCQQ------NEGQHCVLFAVGDDWQSIYQFAGSDVDLTTGFE 494

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                         ++  L  ++R  + I  V ++              S    + ++
Sbjct: 495 DRFPHS--------TVHYLDTTYRFNSKIGEVANRFVQQNPAQLEKELKSHKEQKAKA 544



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 24/144 (16%)

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +++ L+   R+ +++ S L    +   +         +    ++  MT H +KG E+  
Sbjct: 552 NVEKVLDQLNRSAKSTQSVLLLGRNHYHKPELLSDWQKNFALLKIDFMTCHASKGKEADF 611

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V LV      F                               ++   L K        E 
Sbjct: 612 VILVGVDEGQFP------------------------ARVKALHLSDALTKSKDTFAYAEE 647

Query: 648 NRLLYVGMTRASDQLIICKHSNTS 671
            RL YV +TRA  ++ +    + S
Sbjct: 648 RRLFYVALTRAKRKVWVSYSGSGS 671


>gi|215405203|ref|ZP_03417384.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           02_1987]
 gi|289747010|ref|ZP_06506388.1| DNA helicase II [Mycobacterium tuberculosis 02_1987]
 gi|289687538|gb|EFD55026.1| DNA helicase II [Mycobacterium tuberculosis 02_1987]
          Length = 700

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/496 (13%), Positives = 147/496 (29%), Gaps = 76/496 (15%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +            S +    +L+              L+        +  + 
Sbjct: 68  AAGEMRSRL--RALDAAARTGSGVGAVQALTFHAAAYR------QLRYFWSRVIADTGWQ 119

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL S F        +  +    +    DL  +++ ++   I   +        +      
Sbjct: 120 LLDSKFAVVARAASRTRLHASTDD-VRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLD 178

Query: 128 TL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + + YE  K +   +   D            +  A +  +        ++DE Q
Sbjct: 179 AAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQ 238

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q  V+ +   D             L  VGD  Q+IYSF GA P+ +L   R    
Sbjct: 239 DVTPLQQRVLSAWLGD----------RDDLTVVGDANQTIYSFTGASPRFLLDFSRRFP- 287

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    +++ L   +RST  ++++ ++V +                + R S   + G
Sbjct: 288 -------DAAVVRLERDYRSTPQVVSLANRVIAAARGR-------VAGSKLRLSGQREPG 333

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                          S  + S     A  +A +I+ +I + T     
Sbjct: 334 PVP-------------------------SFHEHSDEPAEAATVAASIARLIASGTP---- 364

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                   ++ +L R    + +             I+          +   IK  +   +
Sbjct: 365 ------PSEVAILYRVNAQSEVYEEAL----TQAGIAYQVRGGEGFFNRQEIKQALLALQ 414

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK--FQHV 484
            +  ++ D +   ++++ L          + T+  E       + +  +  +++     +
Sbjct: 415 RVSERDTDAALSDVVRAVLAPLGLTAQPPVGTRARERWEALTALAELVDDELAQRPALQL 474

Query: 485 IKYIHELIHIAQFCSP 500
              + EL   ++   P
Sbjct: 475 PGLLAELRRRSEARHP 490



 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 62/233 (26%), Gaps = 36/233 (15%)

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEV 525
           Y+           + +  +  +  +       +  D    +L       Q  +     E 
Sbjct: 392 YQVRGGEGFFNRQEIKQALLALQRVSERDTDAALSDVVRAVLAPLGLTAQPPVGTRARER 451

Query: 526 IDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
            + L               +  L  L++EL +               V + ++H AKGLE
Sbjct: 452 WEALTALAELVDDELAQRPALQLPGLLAELRRRSEARHPPVVQG---VTLASLHAAKGLE 508

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              VFLV          H                                L         
Sbjct: 509 WDAVFLVGLADGTLPISH-------------------------------ALAHGPNSEPV 537

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           EE  RLLYVG+TRA   L +    + S   + +++    +   +         
Sbjct: 538 EEERRLLYVGITRARVHLALSWALSRSPGGRQSRKPSRFLNGIAPQTRADPVP 590


>gi|213052961|ref|ZP_03345839.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 516

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/474 (11%), Positives = 131/474 (27%), Gaps = 78/474 (16%)

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELE 555
           S  +    +L    G ++            + E L      L +E      L + I E +
Sbjct: 1   SARNIAENLLATAGGERRLTDIL------HISELLQEAGSQLESEHALVRWLAQHILEPD 54

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
               + +    ++ + V+I+T+H +KGLE P+V+L          +              
Sbjct: 55  SNASSQQLRLESDKHLVQIVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDR-------- 106

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------SN 669
                   ++    +   + I   +     E  RLLYV +TRA     +         S+
Sbjct: 107 -----HSYEAVLDLSHAEESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSD 161

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH--HPENTPLERE 727
              E   +Q     ++      D    +  +    ++D       +T     +       
Sbjct: 162 KKGETDVHQSALGRLLQKGEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHA 221

Query: 728 ETIKQLMDEQKIPKKLFSPI----------KNDINEPYILNPSTIDTKGKTNLESLLSDN 777
           E   + +          +              D+     ++ + +    +    +     
Sbjct: 222 ELSARTLQRLLYDSWRVTSYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFP 281

Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM- 836
           +  + G  +H L + +        +           +          L ++  +  N   
Sbjct: 282 RGASPGTFLHSLFEELDFTQPIDPQWVQEKLELSGFETRWEPVLTRWLDTVLHVPLNETG 341

Query: 837 --MTTAMSCDSYSEV----SVSGKINCPKKDIIIS----------------------GRI 868
             ++     +   E+     ++  +   + D +I                       G I
Sbjct: 342 VSLSVLTEREKQVEMEFYLPIAQPLTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFI 401

Query: 869 DQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIAQLSIYEKILKD 913
           D +   +   ++ +YK++                    + +  Q  +Y   L  
Sbjct: 402 DLVFRYEGRYYLLDYKSNWLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLALHR 455


>gi|238794343|ref|ZP_04637955.1| UvrD/REP helicase [Yersinia intermedia ATCC 29909]
 gi|238726337|gb|EEQ17879.1| UvrD/REP helicase [Yersinia intermedia ATCC 29909]
          Length = 545

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/641 (12%), Positives = 179/641 (27%), Gaps = 163/641 (25%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L   +     +       + FL +  T +     + I   S  + +  +  ++      +
Sbjct: 16  LALTAGPGAGKTEMLAQRADFLLRTGTCR---YPKRILAISFKV-DASRNLKERV----E 67

Query: 113 RFNTYKMFKS--TLASLTLAKYLNAHYEEAKKKNCVLD------------------FEDL 152
           R     +     +      AK +   +         LD                  F DL
Sbjct: 68  RRCGPDLASRFDSYTFHAFAKRIIDRFRPVLTGKNALDAGYTIVDKKNGPSRTQIEFGDL 127

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           +     +L+   ++   R  I +  + I +DE QD + +Q+++++              +
Sbjct: 128 VPLAIQILQTSKIA---RNAIRKTYSDIFLDEFQDCTNLQYDLVKL---------AFQGT 175

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
              L AVGD KQ I ++ GA                         + +  +FRS   +L 
Sbjct: 176 SLRLTAVGDTKQKIMAWAGALDGIFQTFANDF---------NAVPLNMYRNFRSKPKLLR 226

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
           V +++    +                             + V+       +  +     +
Sbjct: 227 VQNEIIRTLDP----------------------------DSVMPDEQLDGDEGEVYAYRF 258

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
            DS  +       A  +A  I++ I ++          +   +I VLV   K   L    
Sbjct: 259 EDSCKE-------AIYLADLINSWINSEQ---------LPPAEIAVLVS--KQLELYADH 300

Query: 393 TRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                    I      +   +T   A + ++     +  + +  +++ ++   +    E+
Sbjct: 301 LMIELEVRGIPYRNEQQLQDITIEPAARLIVDYLSCLYGKREPKAWIRLMNQMIPFADEE 360

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
                     +           A    S F   ++   E +               L   
Sbjct: 361 IQSSAKKDLDQLIKKQRKKVSDARHTDSPFSDWVQLAIEFLKYIGSKMLVA-----LSPD 415

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
              +  ++   +E    + E L            +L                   A+   
Sbjct: 416 YETRSRLNDVIHETFARVKELLKSEPDF----PKALGRF----------------ADDQA 455

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           VRI+T+H +KGLE   V ++   +++F                                 
Sbjct: 456 VRILTIHKSKGLEFDSVIIMAVENEIFFGNQ----------------------------- 486

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                        +E     +VG++RA  +LI+    +   
Sbjct: 487 -------------DENRCAFFVGVSRAKRRLILTHADHRER 514


>gi|283953896|ref|ZP_06371426.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794675|gb|EFC33414.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 533

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 117/366 (31%), Gaps = 64/366 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + IM+VH +KGLE   V L+D+ S+   +     +                 +  ++  
Sbjct: 225 GISIMSVHKSKGLEFDHVILLDSLSKNNPNNENIMLEY-DINQGWQLHIKDKIREVTKEP 283

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I +   +++ ++  E+    LYV  TRA + LI+ K +              + +  +  
Sbjct: 284 IYTLFKENIARANYEDDINKLYVAFTRAKESLIVIKRNEECVNGHYPSYFKGEFLNIASQ 343

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               ++  +  +S+ K+     +      E   L+  ++ ++L  ++             
Sbjct: 344 ERGFLESKEQISSVKKESLQNLQ----KFEKIALQEVQSEERLGSKE------------- 386

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
                                           G   H  +Q +        +  I    +
Sbjct: 387 -----------------------------MYFGNAFHFFMQNLKLPKGENFQTLIQQCRS 417

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKINCPKKDIIISGRID 869
                    +++ L   I  LL+N      +       E ++S   N   K +      D
Sbjct: 418 NFRHFLDESDFEKLFKRIEILLKNTQFQALINDKKLLKEQTLS--FNGEIKQL------D 469

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VS 928
            +++  +  FI +YKT          +   H  Q+  Y+  + +      +   +IY + 
Sbjct: 470 LLALKDEEAFIIDYKTG-------LAMQDKHKDQVRTYKIAISEILKKDKVRAFVIYCLE 522

Query: 929 EPKVFI 934
           +  +  
Sbjct: 523 DKILIE 528



 Score = 41.1 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 68/228 (29%), Gaps = 42/228 (18%)

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L  ++RS   ++  V++ F          E         +    + G V++ E    + 
Sbjct: 13  NLNTNYRSKELLVDFVNETFK---------EKIKDYKEQFALESKKGGFVRIVESKEQKV 63

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
            +Q    +E                        T+  ++G      +     I   DI +
Sbjct: 64  KNQAQEIKE-----------------------KTLKTLLGQINFLRSKN---ISYDDICI 97

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L  K  D  ++    R  K    I        +L +  +++ ++   ++ +  +   +F 
Sbjct: 98  LCWKNNDADMVLDFLREQK----IPAFTQSNVLLENKASVRLVLEYAKYCIFGD---AFY 150

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            +    L  F    I    ++      ++   +   +         I+
Sbjct: 151 LVFLKELLGFKPRKITLDFSKNAMENVLFLIKELKLDLNDIALIQFIE 198


>gi|76802567|ref|YP_327575.1| helicase [Natronomonas pharaonis DSM 2160]
 gi|76558432|emb|CAI50023.1| probable helicase [Natronomonas pharaonis DSM 2160]
          Length = 1028

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 93/299 (31%), Gaps = 22/299 (7%)

Query: 85  ITQEINKKSPDLKEKLKKSQD-EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
             ++       L   +  ++         R                  ++   Y     +
Sbjct: 553 YNKKERDIKESLASFVHNAKTFRIDADDARSRLTPTNARKYHFGHCGAFVLEAYNAYLDR 612

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
             ++DF+D+I      ++    S W       + +H+L+DE QD S  Q E+IR+     
Sbjct: 613 AGLVDFDDMINEAIAAIQADPESYW------AQFDHLLVDEFQDVSRHQLELIRA----- 661

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
           F G         LF VGD+ QSIYSF GA+  + +  +              +   L  +
Sbjct: 662 FTGGEDLQETPRLFCVGDDWQSIYSFQGADVDQFIAFEENF--------GPTAETRLTEN 713

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +R+   +L   + + +  ++    +  +      + +     G  +   +      +   
Sbjct: 714 YRNPVTVLEAGNDLIANNDHQIAKTVRAAAGHDCQPTLHVLDGYTENAYERRVGEYAANL 773

Query: 324 PQQESWTSYFDSLPQESS--ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +Q                            +   +    I  +GK    + +D+    
Sbjct: 774 VEQRLEKGIGTEPSDAMVLCRYDAGAPFTDRVKAELERRNIPYDGKDDHYRPEDMPDEY 832


>gi|157148134|ref|YP_001455453.1| hypothetical protein CKO_03945 [Citrobacter koseri ATCC BAA-895]
 gi|157085339|gb|ABV15017.1| hypothetical protein CKO_03945 [Citrobacter koseri ATCC BAA-895]
          Length = 573

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 81/552 (14%), Positives = 154/552 (27%), Gaps = 126/552 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y     +  ++DF+ ++  +  +L K +    +  ++   +  IL+DE QDTSLIQ
Sbjct: 148 VVKEYHNHLYEQKLIDFDLILNLSCRVLTKYNA---LCERLSLLLRCILVDEYQDTSLIQ 204

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E++R +                +  +GD++Q+IY+  GA  K         Q       
Sbjct: 205 YEILRQIVLK---------KNTMITFIGDKEQAIYTGLGAVVKNRDELIDCFQLD----- 250

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              + ++L   FRS+  I+                 +D    I   S             
Sbjct: 251 -NLTEMKLTGCFRSSQSIVDF-----------YSKYKDEDYDINSLSDNKD--------- 289

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                             +       E   + L   I+  I   +             + 
Sbjct: 290 -----------------FNSVIFKESEVDVTQLPIYISGIIRTHLAQG----------VL 322

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           + +I +L     D   ++     L  D ++  V        +      L+ L        
Sbjct: 323 SNEIAILCPGWFDVIKLSNDIVTLNPDIEVDGVMISPIPKNNENLWLALVKLFLIKRVPS 382

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           +  +   +L+        D + ++      TE++           IS        I   +
Sbjct: 383 NFNTRQKLLR--------DFLQELNVAAPYTESLSPKKILKIINKISLSVDYNCEIDVWL 434

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
                   H     I       Q+        +   L   L + +  + N         S
Sbjct: 435 REIITSFCHSINLSISIDSYYYQEM----DLLINATLKRMLKYKMAYKANELHLFFNFRS 490

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                              V+I T H+ KG E  VV      +    +            
Sbjct: 491 ------------------GVKITTCHSTKGDEYEVVICTGLLNGKIPN------------ 520

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                               +D+I    +       RLLYV  +RA   L +        
Sbjct: 521 -------------------WNDIINCSSEHQNYVARRLLYVVSSRAKKHLYMISERGYKT 561

Query: 673 EKKSNQRTWYDM 684
           ++    +T   +
Sbjct: 562 KRGYPYQTTPQL 573


>gi|311063890|ref|YP_003970615.1| DNA helicaseII-like protein [Bifidobacterium bifidum PRL2010]
 gi|310866209|gb|ADP35578.1| DNA helicaseII-like protein [Bifidobacterium bifidum PRL2010]
          Length = 499

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 64/272 (23%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE  K     +DF+D+++    ++   +    +   I   I  + +DE QD S 
Sbjct: 180 ADIITAYEGEKTVRGQIDFDDILLLVCHVMDDYEE---LAASIRSSIGWLTVDEYQDVSP 236

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++     +           R +  VGD  Q+IYSF GA    +L      +  A +
Sbjct: 237 LQHRLMTLWLGN----------NRNVCVVGDPAQTIYSFAGASSYDLLHFADEFRPLAAD 286

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L   +RST  ++   ++V +               +  RS+R G       
Sbjct: 287 -------VTLNTDYRSTPQVVRYANRVLAAAPER-------EQYLVLRSARSGGP----- 327

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                               + +D+  +E      AR IA  I+ ++             
Sbjct: 328 ----------------RVGHTCYDTDEEE------ARGIAARIARLVAGG---------- 355

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
           +   D  VL R     P I    R     Y++
Sbjct: 356 VDPGDCAVLTRINAQQPAICTALRAEGLRYRV 387



 Score = 44.9 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 35/113 (30%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            SA  + V + T+H +KGLE P VF+V     +  +                        
Sbjct: 414 LSAAASSVTVSTIHASKGLEFPYVFIVGCSEGLIPYG----------------------- 450

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                         +     EE  RLLYVG+TRA D L +          + N
Sbjct: 451 ------------ASIAGEALEEERRLLYVGVTRAEDGLHMSYARAKDEGSRPN 491


>gi|257052802|ref|YP_003130635.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691565|gb|ACV11902.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 916

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 22/243 (9%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   YE+ K++N ++DF+D+I +    +++         +   +  H+L+DE QD ++ Q
Sbjct: 501 LLEEYEDWKRRNGLVDFDDMIYDAVAAVREDPD------RFQSQFEHVLVDEFQDVAISQ 554

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ +LT+              LF VGD+ QSIY+F GA  +  +  +           
Sbjct: 555 IRLLDALTDG--------PDAPHLFCVGDDWQSIYAFRGAVVEYFVDFEEYF-------- 598

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              +I EL  ++R  A +L     + +        S  + +            G  +   
Sbjct: 599 GPAAITELRETYRCPATVLEASTDLIANNPTQIEKSPVACSGRETTPRLHVLDGYDEWQY 658

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                  +    +Q              S           +   +   +I  +GK    +
Sbjct: 659 ADRVGEYAATLVEQYLNEDSDPEDVMILSRYDSGAPFVDQVKEALEARSIPYDGKADGDR 718

Query: 373 AKD 375
            + 
Sbjct: 719 YRP 721


>gi|322817641|gb|EFZ25307.1| ATP-dependent DNA helicase, putative [Trypanosoma cruzi]
          Length = 713

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/435 (14%), Positives = 126/435 (28%), Gaps = 102/435 (23%)

Query: 128 TLAKYLNAHYEEAK-KKNCVLDFEDLIINTNDLLKK------------------------ 162
             A YL   Y+    +++  +DF DL     + L+                         
Sbjct: 253 RQAAYLFRFYQTMLHEQHNAVDFGDLEQMFLETLRPVGRQEQPPDEGAEGNGGSNSNSLM 312

Query: 163 -----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
                  +S+ +  ++  +  HI++DE QD + +Q E +  L  D             + 
Sbjct: 313 SVVPPPRLSSPVALQLRAQYTHIVVDEFQDLNEVQLECLALLAGD----------TCRVT 362

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD  Q IY++ GA      R +    +          I+ L  ++RS+ +I++ ++ V
Sbjct: 363 CVGDPNQCIYTWRGATTNSFERWRSRFPQ--------TKIVTLGTNYRSSEEIVSAINAV 414

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                          + I  +S R      + L                 +W        
Sbjct: 415 ---------------SQISQQSFRGECGRRIILIRC------------PHAWEQMS---- 443

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                      +   +  ++ T       + R ++  DI +L R R+    +        
Sbjct: 444 ----------LLPRVVEELLRT-------RDRGLKYSDIAILCRTRRTVRDVVTALE--- 483

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
              +I V             I+ +++  R  +    +L   C+++    +FS     K  
Sbjct: 484 -RDQIPVCELRPSRPNSKALIRAILSYLRLCVHPHSNLDVECVIRDAPNHFSAAAATKFI 542

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                           A            Y   L  +             L   K +Q+F
Sbjct: 543 FAMQAECLQRRRELSTAKLQCEDSHATYSYYTILRELVHNG--FAHVHERLRTTKPQQKF 600

Query: 518 ISRFGNEVIDVLDEF 532
           +  F        D  
Sbjct: 601 LRNFIEVTTAAHDAL 615


>gi|94500701|ref|ZP_01307231.1| Superfamily I DNA and RNA helicase [Oceanobacter sp. RED65]
 gi|94427256|gb|EAT12236.1| Superfamily I DNA and RNA helicase [Oceanobacter sp. RED65]
          Length = 738

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/599 (12%), Positives = 164/599 (27%), Gaps = 94/599 (15%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           QEI ++     + +    ++     D        +               +E+ +K+   
Sbjct: 132 QEILQERKKWVDPMMSFMEQVKSSLDPAAVVFKAQQLPEHCRFFVNTYEAFEQWRKQQRR 191

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           + + D++ +   L  +      I  +    ++ IL+DE QD + IQ  ++  L  +    
Sbjct: 192 ISYGDMLHDPCMLFTQ---RPDIAQEFSNHMDWILVDEYQDINGIQQFLLEVLAGE---- 244

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    +  +GD  Q+IY + G++        ++  +R  N      +  L  SFR 
Sbjct: 245 ------RSKVMVIGDPDQTIYEYRGSDSDY---MVKLFDERFQNP----RVYPLTTSFRY 291

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              +  +   +    +    L   +  +             V  +  +            
Sbjct: 292 GHQVALLAGSLIHKNQGRLDLPVLAADSNPKT--------QVNFYPCMDEIPS------- 336

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                   S  +  S    A  +A        +  +     +R I               
Sbjct: 337 ------LLSCIESQSEMHGAENVAVLYRLWGMSAPLELALLQRGIAYDMP-------SQF 383

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            ++    R    ++ +                     L  F++        + + ++ L 
Sbjct: 384 WVLE---RSELQNFMLLFELASGD-FAKRDQTSQYRMLLNFLVLPA-----LKIKRTMLD 434

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL-IHIAQFCSPHDFFT 505
             ++  +  +      +         +      + Q + + +  L +   +         
Sbjct: 435 ELAQSMVQALSQYSGSSIKRVLSQIDYGEFNAWQKQQIQERLLFLELTQDKRLKGFQLVN 494

Query: 506 LILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +      +      F  +  D     +   +R   +    + E++    Q     ++ 
Sbjct: 495 RYVRETDFYKGLSDGAFSKQQADDRIATVQGFVRFMTSINLKVNEVLGHFSQLKLNKQQQ 554

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            +     V+I ++H AKGLE   V L    S  +                          
Sbjct: 555 VTKG---VKISSIHRAKGLEWSSVVLPSVSSAFYP------------------------- 586

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                       +  + S+ E   RL YV MTRA   L I        +      +   
Sbjct: 587 -------YEAEGEMQQASSIEAERRLFYVAMTRAKQSLHIFYPQEDQRQVSPFLSSPAM 638


>gi|300932818|ref|ZP_07148074.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens
           DSM 45100]
          Length = 690

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 101/341 (29%), Gaps = 68/341 (19%)

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           + +A I  +   +    ++DE QD + +Q  V+ +   +             L  VGD  
Sbjct: 203 ETNAGIAEEFRSQYRTFVVDEYQDVTPLQQRVLDAWLGE----------RDDLTVVGDAN 252

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IYSF+GA P+ +L   R   +         + + L   +RST  ++ + +KV    + 
Sbjct: 253 QTIYSFNGATPEYLLDFTRKFPE--------ATTVRLQRDYRSTPQVVDLANKVIEKAKG 304

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                  + + ++    R                                    + S  +
Sbjct: 305 R-----IAGSRLQLVGQRPEGPEP---------------------------EFDEYSDEA 332

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+ +A  I N+I +           +   +I +L R    + L       L     I 
Sbjct: 333 AEAQAVADRIRNLIASG----------VPTSEIAILYRINAQSVLFENALSDL----GIP 378

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQED----DLSFVCMLKSPLFNFSEDDIFKICTQ 459
               +         + + M        + D    ++    +    L   + ++      +
Sbjct: 379 YQVKNGEGFFQRREVGEGMQALFRAAERFDPQPGEVYDAALAALHLVGLTANEPSGAQER 438

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                              +    +   +  L   A+  +P
Sbjct: 439 ERWQSLRALADLISEMVEDNPELTLRAIMLMLRERAESKNP 479



 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 35/189 (18%)

Query: 523 NEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            E    L    +      E N   +L+ ++  L +   +      A    V + ++H+AK
Sbjct: 438 RERWQSLRALADLISEMVEDNPELTLRAIMLMLRERAESKNPPRVAG---VTLASIHSAK 494

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VFLV                                           L     +
Sbjct: 495 GLEWDAVFLVGLVEGTLP-------------------------------FHLALKGAGSE 523

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              EE  RL+YVG+TRA + L +          ++N+R    +      +         T
Sbjct: 524 QAIEEERRLMYVGITRAREHLFLSWSQARREGGRANRRRTRFLDGLIPTSGADATLASTT 583

Query: 702 NSINKDEWI 710
                 +  
Sbjct: 584 AVTGAPKHA 592


>gi|222445159|ref|ZP_03607674.1| hypothetical protein METSMIALI_00780 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434724|gb|EEE41889.1| hypothetical protein METSMIALI_00780 [Methanobrevibacter smithii
           DSM 2375]
          Length = 858

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 25/175 (14%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            +A + + + +   YE    +N ++DF D+I    DL++K  +             +I +
Sbjct: 230 NMAFIQIVEPVFRFYEGYLFRNHLIDFNDMINKAIDLVEKEGIF--------NNFKYIFV 281

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD S   ++ I++L +              L  VGD+ QSIY F  ++         
Sbjct: 282 DEYQDISYKNFQFIKTLKQACNAH---------LVVVGDDWQSIYGFRDSDITLFNDFCD 332

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                        + + +  ++R+  +++ +        E+    S  S  +I  
Sbjct: 333 YFPN--------ANRVFIEKTYRNPQELIDIAGNFIMKNESQFKKSLKSDKSIEK 379



 Score = 48.0 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 22/94 (23%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V   T+H AKGLE+  V L++  ++ +                        P       
Sbjct: 445 NVEYRTIHKAKGLEADYVVLINVFNRDWGF----------------------PNKFYPPY 482

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            V+ +         EE  RL YV +TRA   + I
Sbjct: 483 FVNLIQDWDYDKKLEEERRLFYVAITRAKKGVYI 516


>gi|325918664|ref|ZP_08180765.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC
           35937]
 gi|325535114|gb|EGD07009.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC
           35937]
          Length = 770

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/638 (11%), Positives = 158/638 (24%), Gaps = 100/638 (15%)

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           I +T   L+      W  ++       I +DE QD S +Q  ++  +T            
Sbjct: 193 IYDTAVTLRGNPEL-WSLFR--GRYQQIQVDEFQDISEVQMSILEGITGPDT-------- 241

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
             T+  VGD  Q+IYS+ G++   ++        R T      +   +  +FR   ++  
Sbjct: 242 --TVVVVGDADQAIYSWRGSKVAYIV---HEFAARFT----PCTRFAMSRTFRFGDELAL 292

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
             + +    +        +     +    +      +    +    +   N         
Sbjct: 293 FANHIVVNNKERDDKISIAEEGNPNTLVELTYPVKGRNAFIINLLQERMANGSLSD---- 348

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                        +  +   +  ++     F  G++  +   +I  LV            
Sbjct: 349 -----AAMLCRNYSHSVPLQMEMLMSGIPFFVYGREATLYNPEIGCLVGAMAMAADH--- 400

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
             +      I             + +   + +   +       +             +  
Sbjct: 401 --WPFPTRSIP-------RFIQAMMVAPTVFVSNAVTQMLTVNAMEVFEDQGSQAVGKGM 451

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           +  +               K     +      ++ +       +   P       +    
Sbjct: 452 LQAVKQIASIVTQHEMERLKTGLPMLKDRASFMEMLCA--GGMRSLRPGQVIDTYIQYTN 509

Query: 513 GRQQFIS-----RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                +        G E +  +          E     +L   + EL        +    
Sbjct: 510 LIDSLLKHSRTREDGEEKVRNVQAMRAAAEGFE-----TLTAFLDELGPMAAHE-KDKPP 563

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            H  VRI +VH++KG E P+V L    + V                              
Sbjct: 564 KHPHVRIQSVHSSKGAEFPLVILPSWNAGVVPANSPLD---------------------- 601

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                            EE  RL YV +TRA   L+I    +      +     Y+    
Sbjct: 602 ----------------AEEERRLAYVAVTRAKHHLVIQHAEDPM---LTGWIEQYEDFPP 642

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
           +     R         +     +A        +   L      ++ ++ + +   +    
Sbjct: 643 ANDGIRRASPYLFEGELGISMRVAEAVRDGVQDCITLRSPRVAQRYIEAKGMAGLIRIET 702

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
              +       P         +  +  +   +  RG  
Sbjct: 703 LPHLAALSAGRP-----LTDISALAPGAQIWSRGRGTC 735


>gi|114561639|ref|YP_749152.1| UvrD/REP helicase [Shewanella frigidimarina NCIMB 400]
 gi|114332932|gb|ABI70314.1| UvrD/REP helicase [Shewanella frigidimarina NCIMB 400]
          Length = 995

 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 95/263 (36%), Gaps = 22/263 (8%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           + + +    + +   +   I        +     T  +  L + +   Y++    +  +D
Sbjct: 510 VTELAKLFSQLIGLYKAACIDEAGLEKVFANATQTRKAFELLQPILQQYQQYLSAHGDID 569

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           FED+I      L+          +      +I++DE QD S  +  ++R+L +       
Sbjct: 570 FEDMIAKALAYLQS--------GQYVSPWQYIMVDEFQDISEPRARLVRALRD---SRTK 618

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
             +S  +LF VGD+ Q+IY F GA+ +   + KR     +           L L+FR   
Sbjct: 619 KGNSDTSLFCVGDDWQAIYRFSGADVRLTTQFKRYFGHASETY--------LDLTFRFNN 670

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH---DSQCNPQ 325
            I  V     S   +       S   +   +  I + GT +   +    +   +   N  
Sbjct: 671 RIGEVASAFVSKNPHQLNKDIHSLVQVAKPAVSILRRGTNEGATKDEPSNNALEQVLNAL 730

Query: 326 QESWTSYFDSLPQESSASILARR 348
               T   D L  + +  +LAR 
Sbjct: 731 SVRVTQAVDKLKAKPTVYLLARF 753



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 22/95 (23%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +  ++ H +KG E+  V ++     +                         P  K    +
Sbjct: 775 IECLSFHASKGKEADYVVIMGMTQGI----------------------HGFPSKKITPPL 812

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           +   +   +     E  RL YV +TRA  ++ +  
Sbjct: 813 LDAFLPKAENFEFAEERRLFYVALTRAKHRVYVIA 847


>gi|260769128|ref|ZP_05878061.1| DNA helicase IV [Vibrio furnissii CIP 102972]
 gi|260614466|gb|EEX39652.1| DNA helicase IV [Vibrio furnissii CIP 102972]
          Length = 687

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 94/248 (37%), Gaps = 23/248 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      +I+ R   +  + 
Sbjct: 329 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQLSISKKEIQQRLVEHPDYA 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K++  +DF  +I    D ++K         K D     I+
Sbjct: 389 RLNSELSLTWPCYQAWQQMLKESNQIDFNIMISRATDYVRK--------GKFDSPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  + E+I+SL E          +   LFAVGD+ QSIY F G++        
Sbjct: 441 IDEYQDISPQRLELIQSLCE-------QKPNHTNLFAVGDDWQSIYQFAGSDVNLTTDFS 493

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I +V ++      +    + +S  T + ++  
Sbjct: 494 ARFPHS--------TVHYLDTTYRFNDQIGSVANRFVQENPSQVPKALNSFKTQKQKAVY 545

Query: 302 IGQVGTVQ 309
           +     V+
Sbjct: 546 VAPSNHVE 553



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 41/144 (28%), Gaps = 24/144 (16%)

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +++ L+   R      + L    +   +        +      +  MT H +KG E+  
Sbjct: 551 HVEKVLDQLNRQASGMKTVLLLGRNHYHKPELLRDWQNHYLSLRIEFMTCHASKGKEADY 610

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V ++      F  +                 P                          E 
Sbjct: 611 VIVLAVDEGQFPARVKSLHLDSALTQSSDRFPY------------------------AEE 646

Query: 648 NRLLYVGMTRASDQLIICKHSNTS 671
            RL YV MTRA D++ I    N S
Sbjct: 647 RRLFYVAMTRAKDKVWITHSGNGS 670


>gi|302878146|ref|YP_003846710.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
 gi|302580935|gb|ADL54946.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2]
          Length = 565

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 75/545 (13%), Positives = 149/545 (27%), Gaps = 134/545 (24%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+        +DF D+++   +  +   +           +  +L DE QD   
Sbjct: 148 EDVFNAYQHLLATEHGMDFADILLTVVNGFRDESIKPLA-------VRWLLADEFQDADE 200

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q + +               +   +  VGD+ QS+YSF  A         R++Q     
Sbjct: 201 VQAQWV----------IEHGMAGIEVTIVGDDDQSLYSFRNAL--GYAGMLRVSQTLV-- 246

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I LP+++R   +IL    ++ +   N    + +S              G V+ 
Sbjct: 247 ----AQEITLPINYRCAPNILAHAARLIANNPNRANKAIESAR---------DASGIVKT 293

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                   +                          A  +   I    G            
Sbjct: 294 HRAADRSDE--------------------------ASLVVEAIKKSAGQC---------- 317

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                  +L R      ++            I    +    + D +    L+ L + I S
Sbjct: 318 -----WAILARTNSLLEVVEAELLA----SGIDYTLSGGKSVWDGVTGSALVGLLKSIQS 368

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +    +    + ++  +         + E I   A     + +  I+    
Sbjct: 369 DGWTGMANALAVCGI----KSELLNLHHDNKSCGQILESILIHAPENDVRTRKTIESAR- 423

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
               A++          L               +  +++ +  N   R +      L  L
Sbjct: 424 -RGYAEWRRQIADGNTTLAIYAAANWLAQHVKQDRGNLVKKLANIIARLKGALAQRLNTL 482

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
               ++   T           V + T+H +KGLE   V+++   +    H          
Sbjct: 483 SRTTDRTNAT----------GVVLSTLHGSKGLEFDSVWIIGAENGNLPHPDS------- 525

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                           T+EE  RL YVG+TRA ++L I      
Sbjct: 526 --------------------------------TEEEERRLFYVGITRARNRLEISSSIED 553

Query: 671 SNEKK 675
             + +
Sbjct: 554 GLDSR 558


>gi|257459105|ref|ZP_05624224.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           gracilis RM3268]
 gi|257443490|gb|EEV18614.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter
           gracilis RM3268]
          Length = 497

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 81/512 (15%), Positives = 166/512 (32%), Gaps = 71/512 (13%)

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFA--NCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                DDI  +C +      + E + +F     G +K     + ++ +I  A+FC   D 
Sbjct: 37  CGVRADDIAILCWKNEHVSALKEMLSEFCEVCSGSNKALRCSEQVNAVIQYAKFCVGGDE 96

Query: 504 F-----TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL---------QE 549
                   ILG +   ++  +           EF+   L+        L           
Sbjct: 97  IYLRNAEAILGRR--LKKIAADLHKNAQKT-AEFIASALKLNFVDPDLLLFFETLAKFNS 153

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
               L     T   A   +   ++IMTVH +KGL+ P V + D        +  K     
Sbjct: 154 FSEYLFANDETEVFAKEESG--IKIMTVHKSKGLQFPHVIVCDRIGGKDRGESSKLATDY 211

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                   I       KS +   + L+    +S  EE    LYV  TRA   LII     
Sbjct: 212 DFTTHKWRIFYKFASRKSLDAEFAALMDENDRSAHEEDINKLYVAFTRAERSLII--VKR 269

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
           + ++      +++             KK K    +   +   +++    P +   E +  
Sbjct: 270 SESKIDQYNYSFFS---------PYAKKTKGAGVVEWLDIPDFQYGYVIPSSVKSEEKPP 320

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            K++                       L         +               G  +H  
Sbjct: 321 QKKVA----------------------LVVGEPQGAQEKAGGGETEALSAIYFGEALHYA 358

Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSE 848
           L++       +    ++    + AK     +++N+      L +N    T +    +Y E
Sbjct: 359 LEMSEGFAADEILRGVSLAKGRYAKFLNDADFENIAARALGLSKNEEFLTLIKGAQAYKE 418

Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           + +       + +++   R+D     +  I +F+YK+        E     + AQ++ Y+
Sbjct: 419 MPI----KSAEGELL---RVDLACFRRDEILLFDYKSS-------EKYLAQNKAQVARYK 464

Query: 909 KILKDSYPNKSLVCLLIYVSE--PKVFIIPQN 938
            ++++ YP+  +   ++ +     ++  +   
Sbjct: 465 SVIREFYPHARVCAFVLALEAASARLIEVNDE 496


>gi|255326995|ref|ZP_05368071.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
 gi|255296212|gb|EET75553.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296]
          Length = 1292

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 103/907 (11%), Positives = 238/907 (26%), Gaps = 157/907 (17%)

Query: 2   KNRFGLSLNESYELIYKDLWPLPYFQ---VSDINKYVS-----LSMETGNPTILKKAQTL 53
           ++    S + S  +     W    F     +     +S     L + +G    +   + L
Sbjct: 49  RDTIAASSDRSLSVAPTRAWAAYAFDLLKRAQTRGLLSGVEGNLKLLSGPEQDVIIGELL 108

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
              ++       +              +  + T+    +  D  +++ +       +   
Sbjct: 109 ANHAEGIAPGPAW----------PDVLRDALATRGFRHEIRDFFDRMAE-----YDLTAE 153

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYE--EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
                  +    +      L+  Y    A +     D   LI +   LL +   +     
Sbjct: 154 DVHALATEHNQPAWHALAQLHTEYRAVRALRAKNAYDPAVLINDACRLLLR---APEFLA 210

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH--SSPRTLFAVG-------DE 222
           +  +  + ILID+VQ+ S   + ++R +  +       H   +   LFA G        +
Sbjct: 211 EERRRYDLILIDDVQELSPSIYRLLRLIAAEVAPADAAHLTETHPDLFAEGPQVVMTYSD 270

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           +  +  F GA P  V   +                  L  S+R  A ++ +V  +     
Sbjct: 271 EAVVQGFRGARPDLVTTLQSSFP--------SMRTRTLTTSYRLPALMMPLVADIRRRLP 322

Query: 283 NAQGLSEDSTTTIRHRSSRIGQV--------GTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
                   +      ++   G V        G +       +      +       +   
Sbjct: 323 RYTRFVPLTAEQEGAKNGAQGGVKNGAPATFGRINTTPADEALTWGAADEPLLHLGADGK 382

Query: 335 SLPQESSASILA----------RRIAYTISNMIGTDTIFSNGKKRV-----IQAKDILVL 379
            L      +  A          +  A  I+ M+  + I+ N   R        + D+  +
Sbjct: 383 ILDPAHYRTAPAGVYKYALSSSQDEANLIAQMLLEERIYGNHPYRESAIIVRSSADVARI 442

Query: 380 VR--------KRKDTPLI----TFLTRFLKNDYKISVVGNDRF----------------- 410
            R         R    L+        R   +   + V    R                  
Sbjct: 443 RRVLSSNGIPSRTSAALVPVRDEPAVRPFLDALSLLVYARKRGEKALNPAVHMPAAEGAE 502

Query: 411 -------ILTDHLAIKDLMALGRFILSQ-----------EDDLSFVCMLKSPLFNFSEDD 452
                     + L++ +   L R  L                 S + +L S L   S  D
Sbjct: 503 GTEAAERGGYETLSVTEAEELMRRSLDDVIAEESRANPLGGAQSAITLLTSRLGGASSMD 562

Query: 453 IFKICT-----------QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI------A 495
           + ++              R   + +   +              +  I  ++         
Sbjct: 563 VRRLRQQLRSIELQSGGHRPSDDLLLGALLHPETLPEEGVGRAVHRIAAVLSAGRKALAR 622

Query: 496 QFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDE---FLNFTLRN-EQNSYS 545
              +  +    +  A    + ++++        +     LD          R  EQ   +
Sbjct: 623 PESTSTEVLWALWEASGLEKTWVTQSRSAGPDADAAHRNLDAMIGLFEAADRFDEQMRGA 682

Query: 546 SLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             ++ +  ++     +    +     + V I+T   A G     V++       + +  +
Sbjct: 683 GAEQFLDFIDAQDLPMDTLAARGVRQDAVEILTPALAAGQSWRTVYVCGLQEGTWPNTTV 742

Query: 604 KKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
           +   +      D                     +              + T+ +  R+  
Sbjct: 743 RGSLLSTGDLTDLCDARLRQRAQQAEQQAGESEQPVPPARIRSYPERVRDTRHDELRMFA 802

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           V  TRAS +L++    N                      D  + +++   ++     +A 
Sbjct: 803 VAATRASTRLVLTAVRNDDQAPGEFFDFVLPTDAVGDSTDVPITRVRRPATL--RSLVAE 860

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
              T   E+    R E  +Q   +Q   +   +P +  +            ++    L +
Sbjct: 861 LRRTLVEESMNAMRAEDAQQEDTQQNGAQMHNAPEEEALTPEASAYRLDAASRTLARLAN 920

Query: 773 LLSDNQT 779
             +    
Sbjct: 921 AQAPGAA 927



 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/391 (12%), Positives = 117/391 (29%), Gaps = 52/391 (13%)

Query: 566  SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               H+E+R+  V  A    + +V            +    +    ++ D   +PI   + 
Sbjct: 792  DTRHDELRMFAV-AATRASTRLVLTAVRNDDQAPGEFFDFVLPTDAVGDSTDVPITRVRR 850

Query: 626  KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS-NQRTWYDM 684
                  +  L+  L+++  EE    +     +  D        + + E+++         
Sbjct: 851  ---PATLRSLVAELRRTLVEESMNAMRAEDAQQEDTQQNGAQMHNAPEEEALTPEASAYR 907

Query: 685  VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +  +     R+   +   +   D W     S+          +         +   +   
Sbjct: 908  LDAASRTLARLANAQAPGAAPDDWWGLLPLSSTELLFAHRPADHAELDENHGEDGEEPAE 967

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT-------FNRGLIIHKLLQVIFTLP 797
            +P +N       L+PS ++T   + L+ L+S  +         + G ++H + +   T  
Sbjct: 968  NPAENPGRRTITLSPSRLETIHSSPLDWLVSAARAEAQTDLSRSLGTLVHAIAEEYPTGT 1027

Query: 798  EHKRKNFITSYC------TKNAKLWPAKEYKN-------LLLSITRLLENPMMTTAMSCD 844
              + +N +           +       +  +        L     R++    ++      
Sbjct: 1028 LEELQNALDERISSLGVPARKEDETDEEYRERVPWESYALYERAKRMI--LRLSYYYRQH 1085

Query: 845  ----------------SYSEVSVSGKINCPKKDIIISGRIDQI-----SISQQNIF-IFE 882
                                V         + D +++GR+D++     +      + I +
Sbjct: 1086 MGDAGWQNLGVEGSFAVRVPVPFDPAGEVGELDALLTGRVDRLEGTAPAEDGTRRYAIVD 1145

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             KT    P   E        QL+ Y+  ++ 
Sbjct: 1146 LKTGKSKPTGSEMET---HPQLAAYQIAVEA 1173


>gi|289803107|ref|ZP_06533736.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 308

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 105/337 (31%), Gaps = 54/337 (16%)

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            + +            +I    +          IKDL+A  R + + +DD +F+ ++ +P
Sbjct: 1   QSRVFEKFL----MQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTP 56

Query: 445 LFNFSEDDIFKI-CTQRHETETVYEYIQK---------FANCGISKFQHVIKYIHELIHI 494
                   + K+        ++++                   +++F H +  I  L   
Sbjct: 57  KREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHWLGEIQRLAER 116

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNE-VIDVLDEFLNFTLRN----EQNSYSSLQE 549
               +  D    I       +   S    E  +  +++  ++        E +   +L +
Sbjct: 117 EPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGNELDEPMTLTQ 176

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           +++         +       ++V++MT+H +KGLE   V++V        H+        
Sbjct: 177 VVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFLYVYMVGMEEGFLPHQSSID---- 232

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                          +   EE  RL YVG+TRA  +L       
Sbjct: 233 -------------------------------EDNIEEERRLAYVGITRAQKELTFTLCKE 261

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                +  +      + +   +D   ++ +   S  +
Sbjct: 262 RRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAEE 298


>gi|284097277|ref|ZP_06385418.1| helicase IV [Candidatus Poribacteria sp. WGA-A3]
 gi|283831213|gb|EFC35182.1| helicase IV [Candidatus Poribacteria sp. WGA-A3]
          Length = 893

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 99/322 (30%), Gaps = 27/322 (8%)

Query: 2   KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
                L  N      +   +         +++     +      + +      + +    
Sbjct: 406 HEHLALDQNGRPPEFFSSDYIDGVQWKRQMHQQHGTQLLETTSAMFRNGTIFDRLAAGLK 465

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
               F  +      +         T  +           K +      +R R      F+
Sbjct: 466 RYGAFEEVRPPSPQKIIERISEDYTTPLYSLMRTFLSHWKSTGATEEVLRSRLVDLSGFE 525

Query: 122 STLA--SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
              A   L +   L   Y+   + N  LDF+D++   +D L+          ++      
Sbjct: 526 RLRAEAFLNVIIPLREIYDRKLRDNNELDFDDMLAQASDALRD--------GRMRHPYKL 577

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           IL+DE QD S  + E++R++ E         +    LF VGD+ Q+IY F GA+   +  
Sbjct: 578 ILVDEFQDISWSRAEMLRAMLE--------QNQDCKLFVVGDDWQAIYGFAGADVLIMTN 629

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +      A +        +L  +FRS   I+ V         +       +  ++    
Sbjct: 630 FRDEFDVAAED--------QLTQNFRSNQGIVNVASWFVQKNPSQIPKEIRAGDSLCEGV 681

Query: 300 SRIGQVGTVQ-LWEQVVSQHDS 320
             +      + +W  V  +   
Sbjct: 682 VHVVYYQRDEHIWPLVEVKLSE 703



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 87/296 (29%), Gaps = 42/296 (14%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP-- 444
              +   R  +  +   ++  D F             + R +L Q  D     +      
Sbjct: 560 AQASDALRDGRMRHPYKLILVDEF----QDISWSRAEMLRAMLEQNQDCKLFVVGDDWQA 615

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
           ++ F+  D+  +   R E +   E              +V  +           +P    
Sbjct: 616 IYGFAGADVLIMTNFRDEFDVAAEDQLTQNFRSNQGIVNVASWF-------VQKNPSQIP 668

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNF----TLRNEQNSYSSLQELISELEQYPPT 560
             I       +  +     +  + +   +       + N      S+  L        P 
Sbjct: 669 KEIRAGDSLCEGVVHVVYYQRDEHIWPLVEVKLSEIVANGGTGKKSVYILARYNSLCLPQ 728

Query: 561 IK---RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
            +      S +  +++ MT+H +KGLE+  V ++   S                      
Sbjct: 729 PQLLKWRESYSELDIQCMTIHKSKGLEADYVIVLGMNSGR-------------------- 768

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                P     + I+  ++  ++     E  RL YV +TRA  ++I+    +  + 
Sbjct: 769 --HSFPCEIEDDPILKLVMPRVEPFEFAEERRLFYVALTRAKRKIILLAQHDRPSR 822


>gi|88602638|ref|YP_502816.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
 gi|88188100|gb|ABD41097.1| UvrD/REP helicase [Methanospirillum hungatei JF-1]
          Length = 526

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 62/416 (14%), Positives = 115/416 (27%), Gaps = 96/416 (23%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE    ++  L F+ +I  T + L+KR             I ++++DE QD +  Q 
Sbjct: 184 LTKYEACLDEHHRLTFDRMIALTVENLRKRPEVGDF-------IQYLIVDEYQDINRAQQ 236

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+I  L                +F VGD +Q+IY + G++           Q+       
Sbjct: 237 ELIEIL-----------GRGSKIFVVGDPRQTIYQWRGSDEHCFEEFAEYYQQS------ 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               I +P + RS   I+   +      E  +      + + + ++              
Sbjct: 280 --ETISIPENRRSVQTIVQAANYFSETFEKCRYSPMVYSRSEQGKA-------------- 323

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                 L + S     A  IA  IS ++ +            + 
Sbjct: 324 ---------------------HLVEFSDKRSEAVFIADEISRLVESGR---------CRY 353

Query: 374 KDILVLVRK-RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            DI +L+R           + R       I  +   +  L     I  L           
Sbjct: 354 GDIGILLRSVNTSGEPFIDVFRE----KHIPFMVGGKVGLFRRAEIAAL----------- 398

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI-QKFANCGISKFQHVIKYIHEL 491
              + + +  SP   F +           E    +       A  G+     ++  ++E 
Sbjct: 399 ---AKIVVWASPNGFFQKSRWDWKNKIEGEDLLTFGSQEWADAIPGLCTVDEILPRLNEW 455

Query: 492 IHIAQ---FCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEFLNFTLRNEQN 542
                   F      +  +L      Q            +  L  F +     E  
Sbjct: 456 KRQLHGKGFDHVAGMYQELLSILGFLQ-LDPDNPEHAVIMANLGRFGDILSDVETA 510


>gi|313638197|gb|EFS03447.1| ATP-dependent deoxyribonuclease subunit A [Listeria seeligeri FSL
           S4-171]
          Length = 206

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 58/190 (30%), Gaps = 18/190 (9%)

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
                   +       G  +H L+Q   +   P  +    +     +   L  A+     
Sbjct: 14  DRPKFLQKNKLSATEVGTAMHTLMQAVSLENKPSEEDVKQLLQTMMEKDILTDAQVKAIN 73

Query: 825 LLSITRLLENPMMTTAMSC--DSYSEVSVSGKINCP--------KKDIIISGRIDQISIS 874
           +  I    E+ +    +S   +   EV  S  +            + ++I G +D +   
Sbjct: 74  IDQIIGFFESELGQKVLSEKENVKREVPFSYLLPVEKLDKQANLDEHVLIQGVVDSMIEQ 133

Query: 875 QQNIFIFEYKTHHHV------PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
           + +I + +YKT              + +   +  Q+ +Y + ++     K     L +  
Sbjct: 134 EDSIILIDYKTDKIAGRYSGWEAAEKIMKERYQVQIKLYAEAIEAISGKKVSQAYLYFFD 193

Query: 929 EPKVFIIPQN 938
              +  I   
Sbjct: 194 GQHICQINTE 203


>gi|83815933|ref|YP_446416.1| DNA helicase II [Salinibacter ruber DSM 13855]
 gi|83757327|gb|ABC45440.1| DNA helicase II [Salinibacter ruber DSM 13855]
          Length = 1084

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/462 (14%), Positives = 139/462 (30%), Gaps = 36/462 (7%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y E       LDF+DL++ T DLL+       +R  +  E   +L+DE QDT  +Q+
Sbjct: 168 LRAYGEMLGDRGALDFDDLLVKTRDLLRSHPD---VRADLVDETRAVLVDEFQDTDPVQF 224

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           ++IR L            +   L+ V D+ QS+Y F GA P  +    R    R   + +
Sbjct: 225 DIIRRL----------GEAGAHLYCVADDDQSVYRFRGARPANL----RRYIDRFDCSAE 270

Query: 254 KFSIIELPLSFRSTADILTVVDKVF---SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
           + +   L  ++RS   I  V + V       +    +   +  T   +          + 
Sbjct: 271 RGTRHVLTTNYRSNRSIYAVAEAVLDADERLKQRGDIRTSNAGTQPVQLVACDDPEA-ER 329

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              +    D   +  + S  +      +  +A   A   A        ++ +      + 
Sbjct: 330 THVLRQLRDWLDDGAERSDLAVLTRWNRRLAALERACLRAGLACETSQSEALLDTPPAQK 389

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH--LAIKDLMALGRFI 428
           + A   +V  R+R     +      L +               +          A    +
Sbjct: 390 LHALLRVVDARRR--GRPLDAPMTELLSHLLPDDTMARLRDFGERSMPDATLWTAFQTVV 447

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            +++   S      +   + +   I  +     E         + A   +     +++  
Sbjct: 448 SNEQARRSAGLDSATDRLDQTYATITNLLQNTQEDGLTIGAFTRTALRQLGDPLQLLRRY 507

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGR-----------QQFISRFGNEVIDVLDEFLNFTL 537
            + +              +L   +             +  +     ++  +  + +   L
Sbjct: 508 ADTLTDPASRPSVRQAGTVLDEWRRAQARDARAGDPPRLLLHHRTPQITRLWRQLVRRAL 567

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
             E +  + L E+   L   P           + V    +  
Sbjct: 568 DLETDPPAPLPEMQEALFARPADEGIPPLGADDVVLTNDLEA 609



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 41/379 (10%), Positives = 80/379 (21%), Gaps = 54/379 (14%)

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              + ++  + +            D       A++ A   A+                 + 
Sbjct: 729  LPEDLTADERETLRTVCGLDPASDFDEARPEAAVWADFCAFV------DGAPLVAHNGQR 782

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKI--SVVGNDRFILTDHLAIKDLMALGRFI 428
               + +  L    +           L   +++   +   D   L + L   D     R +
Sbjct: 783  YDFRVLRRLANTHEADAHWATTYDLLPAAHELFPDLRRYDAAHLRETLLDDDADTAHRAL 842

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----------YIQKFANCGI 478
               ED    +  ++            +           YE                    
Sbjct: 843  ADCEDQQRILARMQEERARRRRRLAHEPLLPLLVAALTYESPAPEALSDDAQVFLQVGHT 902

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
               +       +L  +     P       L      +  ++        +          
Sbjct: 903  WALRDASPAGDDLRSLLPRALPDRLRQHALYTLIDEEALLTASAGLQPGLARRLAALFAP 962

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                   S               +       + + + T H+AKGLE   V  +D     F
Sbjct: 963  YADRPLRSKALADLLAHLALWGEET-TPQGEDVITLSTYHSAKGLEFERVVCMDVHDNAF 1021

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                         + E  RLLYVGMTRA
Sbjct: 1022 PP-----------------------------------YFARDPKERRESRRLLYVGMTRA 1046

Query: 659  SDQLIICKHSNTSNEKKSN 677
               L++          +  
Sbjct: 1047 ERHLVLTYPKRERGYDRRP 1065


>gi|218679290|ref|ZP_03527187.1| double-strand break repair helicase AddA [Rhizobium etli CIAT 894]
          Length = 175

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 76/175 (43%), Positives = 115/175 (65%)

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F+ SEDDIF +   R + E+V+ ++Q+FA  G  +F+  ++ +   +  ++  S HDF+ 
Sbjct: 1   FDLSEDDIFAVAGLRGDNESVWSHLQRFAADGTERFRAAVETLELFLRQSRSLSVHDFYA 60

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +LG+  GR+QF++R G EV D+LDEFL FTL +E +    LQ  IS LE   P +KR  
Sbjct: 61  RVLGSHGGRRQFLARLGTEVSDILDEFLTFTLDHESSGLPGLQSFISTLELEAPVVKREQ 120

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
               NEVRIMTVH +KGLE+P+VFLVD GS+ F+H H+ K+ ++ +  D+P +P+
Sbjct: 121 DKGRNEVRIMTVHASKGLEAPIVFLVDGGSKAFTHTHLPKLRLIETDADEPPMPV 175


>gi|315186907|gb|EFU20665.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578]
          Length = 1008

 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 63/421 (14%), Positives = 120/421 (28%), Gaps = 86/421 (20%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSME-TGNPTIL----KKAQTLQQASQTQCIEERFSLL 69
            +     P        + +   L  E  G  T+L    K A+ L+   Q  C  E   + 
Sbjct: 479 ALCVVAGPGAGKTRVLVERVARLVAEGEGGITVLTFTRKAAEELKARLQGTCGAE--GVW 536

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
           +  F    +        +   +  P + ++ ++ +                         
Sbjct: 537 AGTFHAWAYECLVRFHREAGYEVPPVVLDEEERREVWEEACGRVGAGRVGLGRLERLKRE 596

Query: 130 AKY----------LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                        +   YE    +    D +DL++    L+   D    +R  +      
Sbjct: 597 GMRPEEVEGVVGEVWRVYEGVLAERGACDVDDLLLRAARLI---DEVEGVREWVRGRCRW 653

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           +L+DE QD +  Q+E++  +                +  +GD  Q+IY F GA P+ + R
Sbjct: 654 VLVDEAQDLNAAQYELLVRMA---------PGGEGVVCMIGDPAQAIYGFRGASPEWMDR 704

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  R         ++ L  SFR  A++L V + V       +  +      +    
Sbjct: 705 FVEEYGAR---------VVRLEESFRCPAEVLEVAEGVLGEGVGRRMRARGGGGRVS--- 752

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                                                 + +S    A  IA  I   +G 
Sbjct: 753 ------------------------------------AWECASPESEAEFIARQIEQRLGG 776

Query: 360 DTIFSNGKKR-----VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            T FS   +       +  ++I VL R      L+  +      ++ I        +   
Sbjct: 777 TTFFSFDSEVVEDEGGVAPEEIGVLCRTH----LVMDVLEEAFRNHGIPYRRVGEGVRLS 832

Query: 415 H 415
            
Sbjct: 833 R 833



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 34/132 (25%)

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                EV ++++H AKGLE  VVF+    + +                            
Sbjct: 902 EGRKGEVSLLSMHAAKGLEFEVVFIPACEAGLVPFSLFPTEGS----------------- 944

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                             +EE  RLLYV +TRA  ++++      + + +        ++
Sbjct: 945 -----------------DEEEERRLLYVALTRAKREVVLTMARRRTLKGRILPGAPSPLL 987

Query: 686 YDSFHNDERVKK 697
                    +  
Sbjct: 988 AHLPWRPAPLPD 999


>gi|117676144|ref|YP_863720.1| UvrD/REP helicase [Shewanella sp. ANA-3]
 gi|117614968|gb|ABK50421.1| UvrD/REP helicase [Shewanella sp. ANA-3]
          Length = 599

 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 91/672 (13%), Positives = 188/672 (27%), Gaps = 152/672 (22%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
           L       +++  + S+     T   + +  ++            +  S F +      +
Sbjct: 31  LVELTKRLLSRDGAYSVHLLTFTDAARVELTERMLHALTPRAMERVTISTFHSTALAMTR 90

Query: 83  NIITQEIN---------------KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             + + +                    DL +K +    + +++ D     +      +  
Sbjct: 91  GKLNRRLLMANELMLFVKSVLNEADHLDLIDKFRFKVPDVVRLFDEMGRSQDLSKEYSGT 150

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +A  L   Y++   K    DF  +   +   L +R++             HIL+DE QD
Sbjct: 151 EVA--LYELYKDMLIKQGKTDFNVVCQLSVSWLAQREIPPVSAT-------HILVDEFQD 201

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE-PKRVLREKRINQK 246
           T  +Q+  +R                + L  VGD+ Q+IYSF G +    ++  +     
Sbjct: 202 TDALQYMWLR----------EHALLGKKLVVVGDDDQAIYSFRGGQGYDNMVAFQSEFNA 251

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
            A           L   FR + +IL     +                       RI +  
Sbjct: 252 DA---------YVLRDCFRCSKEILNRAGMLIKFN----------------NPDRIDKP- 285

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                                             +A    +     I +    + +    
Sbjct: 286 ---------------------------------MNAVREEQGTVKIIKSGTMDNQLNQIL 312

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                +     V+ R       +  + +     + I           D +A   L+ +  
Sbjct: 313 DAVSKEPHTWAVIARNNAILDRVETVIQ----GHGIEYNRRGGKSFFDGVAPYSLIQIAS 368

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            I  + DD +    L     +  E +  +I       +T +  ++       +  Q    
Sbjct: 369 VISGKHDDHTLHRALA--ALSVPEAETARIIGLCRTAKTTFGGLKHAEIGHHADLQKFHS 426

Query: 487 YIHEL------IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                         A+         L+      R Q  ++   +V            R+ 
Sbjct: 427 LAEAWHDIPAGREDAKRTYMQSIVKLLAIHLDKRDQKHAQVVGDV---------IAGRHW 477

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++   S+ +L S L+               ++ ++T+H++KGL+   V++V + +     
Sbjct: 478 ESLGESIAQLKSSLDCKKRKD--QSEEAAPKLSLITMHSSKGLQFDNVWIVGSDTGTIPS 535

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                               + L +    E  RL+YV MTRA  
Sbjct: 536 -----------------------------------KEALAEGKIAEERRLMYVAMTRAIS 560

Query: 661 QLIICKHSNTSN 672
            L +   S  S 
Sbjct: 561 SLTMSYTSEPSE 572


>gi|256375074|ref|YP_003098734.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
 gi|255919377|gb|ACU34888.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827]
          Length = 876

 Score =  115 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/420 (13%), Positives = 121/420 (28%), Gaps = 84/420 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +      +P  Q    +                  + L+         +++ 
Sbjct: 64  AAGEMRTRL--RALGVPGAQARTFHAAA--------------LRQLRYFWPRVVGGDQWR 107

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT-YKMFKSTLAS 126
           L+    L               +    DL  +++ ++   I   D      +  + T A 
Sbjct: 108 LIDGNKLRMVAQAAHRAGLSTESDSLRDLASEIEWAKASLIAPDDYPAAVARAQRDTPAP 167

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   YE  K +  +LDF+DL+++T   L++      +  +        ++DE Q
Sbjct: 168 APQVVRVYQGYERIKNEAQLLDFDDLLLHTAAALEEHGG---VAEEFRDRYRCFVVDEYQ 224

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q  V+ +                 L  VGD  Q+IYSF GA P  +L   R    
Sbjct: 225 DVTPLQQRVLDAWLGQ----------RDDLTVVGDANQTIYSFAGASPLPLLNFARRFP- 273

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                  + +++ L   +RST  ++ + + V             + + ++    R     
Sbjct: 274 -------EATVVRLERDYRSTPQVVALANDVIKWARGRP-----AGSRLKLIGQRPEGPD 321

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                             +       A  +A  +  ++         
Sbjct: 322 PV---------------------------FTEFDDEPGEAGAVARRVRELLDGG------ 348

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
               + A +I VL R    + +       +     +               ++  +   R
Sbjct: 349 ----VSASEIAVLYRVNAQSEVFEQALAEV----GVPYQVRGGERFFQRPEVRQAVLALR 400



 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 40/215 (18%)

Query: 503 FFTLILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPP 559
               +L       +  +  G   E  + L   +            + L+  ++EL+    
Sbjct: 603 LVRRVLAGVGLTDEPPAGGGAQRERWESLLALVELAEEFASAVPDADLRAFVTELDVRAE 662

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                       V + ++H AKGLE   VFLV         +H                 
Sbjct: 663 AQHPPTVEG---VTLASLHAAKGLEWDAVFLVGLVDGTMPIQH----------------- 702

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                                ++  EE  RLLYVG+TRA + L +    + +   +  +R
Sbjct: 703 -----------------ADGDEAAVEEERRLLYVGVTRAREHLWLSWALSRAAGGRRYRR 745

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
               +           +         + +      
Sbjct: 746 RSRFLHALVPEGHPASRVAAPPREPVQRKPRPECR 780


>gi|261350273|ref|ZP_05975690.1| helicase IV [Methanobrevibacter smithii DSM 2374]
 gi|288861057|gb|EFC93355.1| helicase IV [Methanobrevibacter smithii DSM 2374]
          Length = 858

 Score =  115 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 25/175 (14%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            +A + + + +   YE    KN ++DF D+I    DL++ + +             +I +
Sbjct: 230 NMAFIQIVEPVFRFYEGYLFKNHLIDFNDMINKAIDLVENKGIF--------NNFKYIFV 281

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD S   ++ I++L +              L  VGD+ QSIY F  ++         
Sbjct: 282 DEYQDISYKNFQFIKTLKQACNAH---------LVVVGDDWQSIYGFRDSDITLFNDFCD 332

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                        + + +  ++R+  +++ +        E+    S  S  +I  
Sbjct: 333 YFPN--------ANRVFIEKTYRNPQELIDIAGNFIMKNESQFKKSLKSDKSIEK 379



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 22/104 (21%)

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  +   V   T+H AKGLE+  V L++  ++ +                      
Sbjct: 435 QITNDHESIKNVEYRTIHKAKGLEADYVVLINVFNRDWGF-------------------- 474

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
             P        V+ +         EE  RL YV +TRA   + I
Sbjct: 475 --PNKFYPPYFVNLIQDWDYDKKLEEERRLFYVAITRAKKGVYI 516


>gi|241767542|ref|ZP_04765215.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241361608|gb|EER57980.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 422

 Score =  115 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 75/443 (16%), Positives = 140/443 (31%), Gaps = 29/443 (6%)

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
                     +          ++LVL RKR     +    R L     +  V  ++  L 
Sbjct: 2   RECTQAAAWVAAQIAAGTPPNEVLVLARKRDRLAAMQDALRAL----HLPCVQPEKADLF 57

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
           D   ++D++AL   ++S   DLS    L+SPLF   +D +  +   R + E         
Sbjct: 58  DAPEVQDIVALLDALVSTGHDLSLARALRSPLFGLGDDALVALAVLRRQPEHAGSSWFDL 117

Query: 474 ANCGIS---KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---- 526
                      Q     + +         PHD    I        +F +           
Sbjct: 118 LQKTELLPIALQAPAADLVQYKFWVDALPPHDALHAIYQHADVLARFAAAAPAAQRMAVL 177

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             L   L+  L+++   Y +    +  +++          A    VR++TVH AKGLE+ 
Sbjct: 178 ANLRALLSAALQHDGGRYLTPYAFVRAMKKGGVRAPGRVDAQ--AVRLLTVHGAKGLEAR 235

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V L+DT ++    + +  +   P    +P   +++    S        +   +++ Q E
Sbjct: 236 CVLLLDTDTRPQKAETMGVLVDWPGEKTEPAGFVFLASESSPPPSAEAALAAEQQARQRE 295

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              +LYV MTRA   L +   +       S   +W++ +     + E   +         
Sbjct: 296 ELNMLYVAMTRAKHCLALSSVAP----GVSAPGSWWNRLAPLLTDAELPARAVAAEGSGV 351

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                           P+   E    +  E        +            + +  DT  
Sbjct: 352 AAMPDGTHDHFTLAELPVLAAEVTAGMTAEVGGTAWAGA------------DGAEADTGA 399

Query: 767 KTNLESLLSDNQTFNRGLIIHKL 789
                +          G  +H+L
Sbjct: 400 GAADPAPAVSTPASRLGEAMHQL 422


>gi|212715498|ref|ZP_03323626.1| hypothetical protein BIFCAT_00395 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661580|gb|EEB22155.1| hypothetical protein BIFCAT_00395 [Bifidobacterium catenulatum DSM
           16992]
          Length = 502

 Score =  115 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 84/271 (30%), Gaps = 64/271 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K     +DF+D+++    L++  +    +   I   I  + +DE QD S +
Sbjct: 183 DVYKAYEAEKTNRNEIDFDDILLIVCHLMESDED---VASAIRSNIAWLTVDEYQDVSPL 239

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  ++               S R +  VGD  Q+IYSF GA    +L             
Sbjct: 240 QHRLLTRWLG----------SNRNICVVGDPAQTIYSFAGASSYSLLNFASEF------- 282

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
           G   + I L   +RST  I+   ++V +                                
Sbjct: 283 GPLTADINLNNDYRSTPQIVNYANRVLA-----------------------ASPQRADYL 319

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           +    +   +   +    + + +           A+ +A  I  ++              
Sbjct: 320 KLSSERSKGRRVAETIYGSDWEE-----------AQGVAARIRKLVDAGE---------- 358

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            + D  +L R      ++          Y++
Sbjct: 359 SSADCAILTRVNAQQKILCKALGEQHLRYRV 389



 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 52/398 (13%), Positives = 106/398 (26%), Gaps = 60/398 (15%)

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            L           +        ++  + V      +      +   + D L         
Sbjct: 154 SLISPEDYARVCAAMHRQPPSGLEPSQFVDVYKAYEAEKTNRNEIDFDDILLIVCHLMES 213

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              +A  I + I   T+        +Q + +   +   ++  ++    + + +    S  
Sbjct: 214 DEDVASAIRSNIAWLTVDEYQDVSPLQHRLLTRWLGSNRNICVVGDPAQTIYSFAGASSY 273

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETE 464
               F         D+     +  + +       +L  SP          +    R   E
Sbjct: 274 SLLNFASEFGPLTADINLNNDYRSTPQIVNYANRVLAASPQRADYLKLSSERSKGRRVAE 333

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD---FFTLILGAKKGRQQFISRF 521
           T+Y    + A    ++ + ++         A     +         LG +  R +     
Sbjct: 334 TIYGSDWEEAQGVAARIRKLVDAGESSADCAILTRVNAQQKILCKALGEQHLRYRVRRDS 393

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
           G +         +    + Q   + L+ L                A+ + V I T+H +K
Sbjct: 394 GWQN--------SALSDDAQTRLAMLEALG-------------VGADLSGVTISTIHASK 432

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VFL+     +  +                                       + 
Sbjct: 433 GLEFKHVFLIGCSEGLIPYGAP-----------------------------------QEG 457

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
              EE  RL+YV +TRA D L +         +    R
Sbjct: 458 EVLEEERRLMYVAVTRAEDTLDVSYARTREGNEGERAR 495


>gi|313117106|ref|YP_004038230.1| DNA/RNA helicase, superfamily I [Halogeometricum borinquense DSM
            11551]
 gi|312295058|gb|ADQ69094.1| DNA/RNA helicase, superfamily I [Halogeometricum borinquense DSM
            11551]
          Length = 1180

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 99/310 (31%), Gaps = 61/310 (19%)

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            +        A  L   Y+    +    DF D+I+   D +K  ++          +  H+
Sbjct: 765  EELYHFSHAATRLLQEYQSVYDRYNAYDFVDMIVMATDAIKSGEIDNI------AQFRHV 818

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE QD +L+Q E +++L                LFAVGD+ QSIY F GA P   +  
Sbjct: 819  MVDEFQDLNLVQIEFVQALLS--------RHDDARLFAVGDDWQSIYGFKGARPDYFIDF 870

Query: 241  KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                               L  ++R    ++   + +    E     +  +  ++     
Sbjct: 871  ADHF--------SPAVETRLETNYRCPPSVVKAGNDLIKNNEAKTDKTVTAHKSLETTPR 922

Query: 301  RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                 G+                                       R     I  ++ + 
Sbjct: 923  VHLVPGSDDF---------------------------------QYRRNGIKKIVQLVKSS 949

Query: 361  TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
               S+ K       D++VL R +  +P I  +++ L  D  I V G +   +T     K 
Sbjct: 950  VRESDRK-----PNDVMVLARNQSGSPFIREISKRL-RDADIPVGGENGVEVTKAHQAKG 1003

Query: 421  LMALGRFILS 430
              A    I +
Sbjct: 1004 KEAGHVIIAN 1013


>gi|258623609|ref|ZP_05718602.1| helicase IV [Vibrio mimicus VM573]
 gi|258584097|gb|EEW08853.1| helicase IV [Vibrio mimicus VM573]
          Length = 549

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 90/238 (37%), Gaps = 23/238 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +      ++++R   +  F 
Sbjct: 329 WQKHLAKWPIAYLAGDDELGSHVENPKLIAWLEKQLDQLAQLSLTKKELQERLVDHDDFP 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K+   +DF  +I    + ++K         K       I+
Sbjct: 389 RLNSELSLCWPCYQAWQQMLKEQNHIDFNIMITRATEYVEK--------GKFRSPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E        +     LFAVGD+ QSIY F G++        
Sbjct: 441 VDEYQDISPQRLRLLQALCE-------QNQGQCNLFAVGDDWQSIYQFAGSDVDLTTGFA 493

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               +         ++  L  ++R    I TV ++      N    + +S  T + ++
Sbjct: 494 ARFAQS--------TVHYLDSTYRFNDQIGTVANRFIQQNPNQLPKTLNSFKTQKQKA 543


>gi|81428522|ref|YP_395522.1| ATP-dependent exonuclease, subunit A (C terminal fragment),
           authentic frameshift [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610164|emb|CAI55213.1| ATP-dependent exonuclease, subunit A (C terminal fragment),
           authentic frameshift [Lactobacillus sakei subsp. sakei
           23K]
          Length = 351

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 85/280 (30%), Gaps = 25/280 (8%)

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
             + ++         + ++ I L + I         +       T     +++ ++    
Sbjct: 74  PGSLHNDQDWGQQQQKALQTIDLNSGIATAIAEQLTFKYPANVATQTTAYQSVSEVKRLF 133

Query: 738 KIPKKL-FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
           + P       +     +P   N    D+  +      +        G   H +LQ I   
Sbjct: 134 EDPDNTGLGQLDLAAEQPRQANRYVTDSLAQPQFLQTVQQPTAAEVGTATHLVLQEIDLT 193

Query: 797 PE---HKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMS--CDSYSEVS 850
                   +  +     +N     A     + L  +    E+ +    ++       EV 
Sbjct: 194 QPVTLASLQGLVDRLVLQN--SLSANVAAKINLNHLLTFFESDLGQQLLAHPEAVKREVP 251

Query: 851 VSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE----IEHI 896
            S  +                ++I G +D   ++    ++F+YKT    P +    IE +
Sbjct: 252 FSLLLPAETIFEGIRPTDDDHVLIHGIMDGYLLTDDGCYLFDYKTDFIDPSDQEAAIERV 311

Query: 897 PYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII 935
              +  Q+++Y   L      K +    L  +S  ++  I
Sbjct: 312 KNRYAGQINLYSAALNQI-AQKPVTHKYLYLLSIGELVEI 350


>gi|83945741|ref|ZP_00958085.1| UvrD/REP helicase [Oceanicaulis alexandrii HTCC2633]
 gi|83850831|gb|EAP88692.1| UvrD/REP helicase [Oceanicaulis alexandrii HTCC2633]
          Length = 598

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 81/563 (14%), Positives = 148/563 (26%), Gaps = 135/563 (23%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             R    +              L   YE   +   ++DF+D+ +     L       W+R
Sbjct: 159 HRRRFLNRELPEWRTLDPQLTELVETYEAELRARQLIDFDDMPLLAVRALAAN---KWLR 215

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +  +   + +DE QD       ++  L           S+   LFAVGD  QSIY F 
Sbjct: 216 TAMVAKYPILAVDEYQDLGRALHGMVMGLC---------FSAGMRLFAVGDVDQSIYGFT 266

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA P+ + R                  + L L++R  + I++  +         +     
Sbjct: 267 GATPELLRRLSAR---------DDVETVRLGLNYRCGSRIVSASEYALGENRGYKAPDGA 317

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
              TI       G  G                                   A  L   + 
Sbjct: 318 HEGTIYFHPCTGGYAG----------------------------------YARYLVEELI 343

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I             ++      +I VL         +         +Y  SV+  D  
Sbjct: 344 PEIRE-----------RRPDTNLGEIAVLY----SAAFLGDEVANAAAEYGYSVIRTDGN 388

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
            L           L R++                        I ++     E   ++   
Sbjct: 389 ALYPRG-----SRLMRWLEQC----------AMWCCGGWRSGIPRLSRVVSEGTRLFHET 433

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
               +  ++  + +   +       +  S HD+   +       +  ++R   +    L 
Sbjct: 434 ITDEDQRLTFQRDLTAAL--WDRRDETLSLHDWLAALSEDIIRPRVDLARSLADEYGTLT 491

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           +FL             L E                 +  + + + T+H+AKG E  VV +
Sbjct: 492 DFLVRIGPAGDVDDFPLGEFAG------------IGSGLDRLNLSTLHSAKGREFDVVIM 539

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
             T        +                                      ++   E  RL
Sbjct: 540 FGTEEGRLPRNN------------------------------------ASQNDVREARRL 563

Query: 651 LYVGMTRASDQLIICKHSNTSNE 673
            YVG TRA  ++ +    +  + 
Sbjct: 564 FYVGFTRARYEIHLMYGQHKPSR 586


>gi|86148893|ref|ZP_01067141.1| ATP-dependent DNA helicase Rep [Vibrio sp. MED222]
 gi|85833320|gb|EAQ51530.1| ATP-dependent DNA helicase Rep [Vibrio sp. MED222]
          Length = 317

 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 112/343 (32%), Gaps = 52/343 (15%)

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
           L        ++    +          IKD+MA  R +++ +DD +F+ ++ +P       
Sbjct: 2   LIEKALMQNRVPYKISGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPRREIGPV 61

Query: 452 DIFKI-CTQRHETETVYEYIQKFANCG------ISKFQHVIKYIHELIHIAQFCSPHDFF 504
            + K+        ++++E   +           +   +    +I  +   A+  +  +  
Sbjct: 62  TLEKLGSYANMRGKSLFEASFEMGLEQTLTGRGLENLRRFSDWIVRISDNAERGNTVEAV 121

Query: 505 TLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTL-----RNEQNSYSSLQELISEL 554
             ++                +     +  + +  ++ +      N      +L+E++  L
Sbjct: 122 RSLVRDINYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNYDKEEKTLREVVQRL 181

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                  +     + ++V++MT+H +KGLE P VFL+     +  H+             
Sbjct: 182 TLRDMMERGEDDDDADQVQLMTLHASKGLEFPYVFLMGAEEGILPHQTSVD--------- 232

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                                     +   EE  RL+YVG+TRA  +L   K        
Sbjct: 233 --------------------------EGNVEEERRLMYVGITRAQKELTFTKCRERRQYG 266

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           +  + T    + +  H D   + +K   S  +          +
Sbjct: 267 ELIKPTQSRFLDELPHEDVEWESVKKPQSAEERMEKGQAHIAN 309


>gi|124008282|ref|ZP_01692978.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134]
 gi|123986231|gb|EAY26060.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134]
          Length = 877

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 86/741 (11%), Positives = 213/741 (28%), Gaps = 109/741 (14%)

Query: 1   LKNRFGLSLNESYE--LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
           L++  GL  N + +   + K      +   + +        + G    +     L+Q   
Sbjct: 83  LQSLLGLVTNRTNQTFDLSKMYVGTVHSLCNRLITDRRFGQKKGADKKITPIDDLEQYFH 142

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNII---------TQEINK--KSPDLKEKLKKSQDEF 107
               +   +++++  L      ++N            + +++      L     +  +E 
Sbjct: 143 ISNRKIWTAMIAAGGLDDLPAEEQNQYINDYLAENHKKGVSRYNAIMHLMALFNRFTEEC 202

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
           + +    N     +     + +  +     +E  ++   LDF  +     ++++     A
Sbjct: 203 LDV-ATLNKIVSEEPMKKMVKMYAFYLDSLQEKWQEK--LDFSLVQQKGLEVMQNFGGEA 259

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
                  ++  +++IDE QDT+ IQ ++   L E            + L  VGD+ Q++Y
Sbjct: 260 N------EKFKYVIIDEYQDTNTIQEKLFFKLAE----------VTQNLCVVGDDDQALY 303

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA  +  +  +   ++     G+  + I L +++RS   I+             +  
Sbjct: 304 RFRGATVENFVEFEERCKQYYPK-GKPVTKIPLNINYRSRKKIVDFYTSYIGQTNWQKED 362

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA- 346
                  +  +                      Q   Q   +     +       + +A 
Sbjct: 363 DPTQQYRVHTKQISAHSTDDQASVFTTDYLEPEQSFEQIAQFIQTLLNQQIIEDPNQVAF 422

Query: 347 -------RRIAYTISNMIGTDTIFSNGKKRVI-----QAKDILVLVR-----------KR 383
                   ++    + +          + +           + + +R            R
Sbjct: 423 LFPSLGSTQVPKAQAALESLGLRTYAPRAQPFLKLPEARSIMGIFLRVFGKPERDPEFNR 482

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL------MALGRFILSQEDDLSF 437
            D          + ++  +++  +            ++             +   ++L+ 
Sbjct: 483 GDFKNYHDWMEEVYSEAGVAIRQDAGLKALVEHHRSEITTSISDYKALMAKVEASNELNL 542

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
                         +     + R    + Y   Q                       +  
Sbjct: 543 DDAYDFEKMPAQLKEASISPSARKSLSSTYLLRQLKKQMDEGGKSSFTLRDVITRATSLN 602

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDV-------------LDEFLNF------TLR 538
            +P D F  IL  K+ +    +   ++V                +  FL           
Sbjct: 603 WNPLDLFYKILAFKEFKTMMDAAGKSDVQIDEGPIYNLGLLTGYISRFLELYKTVLRAKD 662

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHN-----EVRIMTVHTAKGLESPVVFLVDT 593
            E  ++      I          +     + +      +  +T+H +KGLE PVV L   
Sbjct: 663 LESKNFKR-AFFIRFWYTIYKKGETEFENSEDPFPRGRIPFLTIHQSKGLEFPVVVL--G 719

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            +   S    +   +M  L  + G P+                       + +  R+ YV
Sbjct: 720 NTVTRSGGVRRMEELMKPLLGNQGEPLTRM-------------------DEFDKARMFYV 760

Query: 654 GMTRASDQLIICKHSNTSNEK 674
            ++RA + LI+  +    +++
Sbjct: 761 ALSRAENLLIVANYKRGISKE 781


>gi|38154608|gb|AAR12242.1| putative ATP-dependent DNA helicase protein [Rhodococcus fascians]
          Length = 123

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 18/130 (13%)

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +R K    + H+L+DE QDT+  Q+EV+++L  +               AVGD+
Sbjct: 1   DGDLTQVREKWQNTLGHVLVDEYQDTNATQYEVLKALVGE----------RARFTAVGDD 50

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA    + +      +          +I+L  ++RST+ IL   + V     
Sbjct: 51  DQSIYGWRGATLDNLRKLPIDFPQ--------LKVIKLEQNYRSTSAILRAANNVIQPNP 102

Query: 283 NAQGLSEDST 292
                +  S 
Sbjct: 103 KLFPKTLFSE 112


>gi|239929059|ref|ZP_04686012.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 374

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 84/252 (33%), Gaps = 22/252 (8%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCIE-ERFSLLSSFFLTQKFTPQKNIITQEINKKSP 94
           S  +          A+ L++A          F  L    L       ++++      +  
Sbjct: 132 SSRLLADATRYQLAARVLREAPGPYPALTRSFPDLVGDLLALDAELAEHLV------RPE 185

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           DL+    +        R      +      A+      L   Y  AK++  +LDF D I 
Sbjct: 186 DLRAHDAELLRTLENTRLTNAELRKVPEAAAARRELADLVLRYRAAKRERDLLDFGDQIA 245

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            +  L         +   +  E + +L+DE QDTS+ Q  ++  L          H +  
Sbjct: 246 LSARL----AAVPEVGRALRDEFHVVLLDEYQDTSVAQRVLLAGLFG--------HGTGH 293

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            + AVGD  Q+IY + GA    +          A   G+  +   L  + RS   +L + 
Sbjct: 294 PVTAVGDPCQAIYGWRGASVANLDDFPEHF---AHADGRPATRQSLSENRRSGGRLLDLA 350

Query: 275 DKVFSIPENAQG 286
           + +         
Sbjct: 351 NGLAEPLRARLE 362


>gi|289177396|gb|ADC84642.1| Probable DNA helicase II-like protein [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 588

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 120/402 (29%), Gaps = 83/402 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           + NE  E +  D   +P    +    + S ++           +          + E  S
Sbjct: 152 AANEMRERL--DALQVPRGVRAS--TFHSAALRQMREVWPDICEG-----PFPDVTEDKS 202

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS- 126
            L +  L +    +     +   +   ++  ++   +   I  ++          T  + 
Sbjct: 203 ALVAQALYRFNGIRPKEQPK---QSVYEVGAEIDWCKVSLITAKNYARVCAATHRTPPAG 259

Query: 127 --LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
                   +   YE  K     +DF D+++    +L   D    +  +I ++I  + +DE
Sbjct: 260 LEPGQFATVYEQYEAEKNSRFEIDFNDILLLACHVL---DAFPDVAKRIRRQIGWLTVDE 316

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD S +Q  ++               S R +  VGD  Q+IYSF GA    +    +  
Sbjct: 317 YQDVSPLQHLLMTRWLG----------SNRNICVVGDPAQTIYSFAGATSYYLEHFGKEF 366

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                +       I L   +RS + I+   ++V        G S      IR  S R G 
Sbjct: 367 APLTAD-------IALNRDYRSVSPIVGYANRV-------LGGSAQRQDYIRLESGR-GT 411

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              V                                + +  A+ +A  IS ++       
Sbjct: 412 GSRV--------------------------MSRIYETDAAEAQAVARQISRILAQGG--- 442

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
                   A D  VL R      L+    +       I    
Sbjct: 443 -------NASDCAVLTRVGGQQTLVAQALK----QANIPYRL 473



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 53/387 (13%), Positives = 105/387 (27%), Gaps = 69/387 (17%)

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           ++       ++  +        +          + D L            +A  I   IG
Sbjct: 251 ATHRTPPAGLEPGQFATVYEQYEAEKNSRFEIDFNDILLLACHVLDAFPDVAKRIRRQIG 310

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG---------NDR 409
             T+           +D+  L            +TR+L ++  I VVG            
Sbjct: 311 WLTVDE--------YQDVSPLQHL--------LMTRWLGSNRNICVVGDPAQTIYSFAGA 354

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
                    K+   L   I    D  S   ++             +   +          
Sbjct: 355 TSYYLEHFGKEFAPLTADIALNRDYRSVSPIVGYANRVLGGSAQRQDYIRLESGRGTGSR 414

Query: 470 -IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
            + +      ++ Q V + I  ++      S       +L    G+Q  +++   +    
Sbjct: 415 VMSRIYETDAAEAQAVARQISRILAQGGNASDCA----VLTRVGGQQTLVAQALKQA--N 468

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           +   L   +  + ++ +       E  +               V I T+H AKGLE   V
Sbjct: 469 IPYRLRRNMNWQSSALAGTAR--QETAETSNAGVEQLGVEKGRVTISTIHAAKGLEYKHV 526

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F++     +  +K       +                                   EE  
Sbjct: 527 FVIGLSEGLLPYKPQSDDGDV-----------------------------------EEER 551

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKK 675
           R+LYV +TRA D L +     + ++  
Sbjct: 552 RVLYVALTRAEDTLHLSFAKRSDSQTT 578


>gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 872

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/424 (16%), Positives = 132/424 (31%), Gaps = 72/424 (16%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           LT+    + +  +  I          + K  +  I            +     L    +L
Sbjct: 136 LTKIERAKLDFYSNNILDDYSKTIANIFKYNEAKINSICSDKGILNNEMKNFLLEKGHFL 195

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y      N  LDF DL     ++LK       +  ++ +   +I IDEVQDTS +++
Sbjct: 196 VNLYNSLLYSNHGLDFVDLTSKAKEILKDD----KLVLRLTETYKYINIDEVQDTSTLEY 251

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +I  +                +   GD  Q+IY + G+EP+++L   +           
Sbjct: 252 FIIEKIF-----------KGNNILLCGDMFQTIYGWRGSEPQKILEFYK--------KEY 292

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             S I    ++RST  I              Q  S                         
Sbjct: 293 NPSEIVFSKNYRSTKFITNGALSFLKNAFELQYKSLYKNEISS----------------- 335

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                +++ N ++       +   +       AR I   + ++                 
Sbjct: 336 -----ETKDNGEKIKLKMCNNLRDE-------ARFIFNEVKSLKEKGE------------ 371

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKI-----SVVGNDRFILTDHLAIKDLMALGRFI 428
            DI  L    +D      L+R L +           +  D+F       IKD++A  + I
Sbjct: 372 -DISKLCILSRDNNYNIKLSRELGSIIGYEGSDFEFILVDQFKFFRRQEIKDIIAFMKLI 430

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQHVIK 486
            ++ D++S   ++K       E     I     +    ++ ++I   A     K+  +I 
Sbjct: 431 ANKYDNVSLKRIVKRLPTGIGEKTFQVIESKEYKEVGISLCDFIDLNARNYGEKYSLLIN 490

Query: 487 YIHE 490
              +
Sbjct: 491 EFAQ 494



 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 73/248 (29%), Gaps = 49/248 (19%)

Query: 460 RHETETVYEYIQKFANCGISKFQHVI---KYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
           R   E +     +  N      +        ++EL   A+   P D    I+     +  
Sbjct: 657 RAINENLIPTSMQRINYMSKHLKAFSYISDKLNELFKEAELKRPQDIIVDIINKFNIKTL 716

Query: 517 FISR------FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE-----LEQYPPTIKRAH 565
           +  R       G E I+ L +F       + N  S+   L+       L          +
Sbjct: 717 YSGRGIEAIKEGREKIERLRDFYVLVRDLDDNKKSNRDFLLDIIKLTGLSNGELENLIIN 776

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             N   + I+TVH +KGLE   VF+V      F                           
Sbjct: 777 RTNKKRIPIITVHQSKGLEFDSVFIVGLQENTFPS------------------------- 811

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                        +K +  EE  R  YV +TRA   L +  H +    +K+    +   +
Sbjct: 812 ----------YMSIKSNNLEEEKRTFYVALTRARKHLYLLTHLHDDYNRKNEVSRFLGYI 861

Query: 686 YDSFHNDE 693
                  +
Sbjct: 862 DKEHIEID 869


>gi|327534677|gb|AEA93511.1| UvrD/REP helicase [Enterococcus faecalis OG1RF]
          Length = 620

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/530 (14%), Positives = 158/530 (29%), Gaps = 131/530 (24%)

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           + T  + +     A++   + +  +H+ +DE QDT+ IQ+ ++++  ++           
Sbjct: 198 LLTTYIFQAN---AFLTKSLRETYSHVFLDEFQDTTDIQYNLVKTCFQNSKS-------- 246

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             + AVGD KQ I  + GA        ++             S I+L ++ RS   ++ +
Sbjct: 247 -LITAVGDNKQRIMVWAGARETVFRDFQKDFS---------ASKIDLMMNHRSAPRLVEL 296

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
                   +    +  +    I        + G ++L        +              
Sbjct: 297 -------QKMMYEVLSEDPVNINTSGRWQEEDGEIELLLTDNDIEE-------------- 335

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK--RKDTPLITF 391
                       A  IA  IS  I             I+ +DI +LV+         I  
Sbjct: 336 ------------AEYIAKNISRQIQNG----------IEPRDICILVKHTPNNYVGKIIE 373

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
             +  +   +I +   D   L      K +++  +  ++++       ++ +        
Sbjct: 374 KLQEYEIRARIEIEYQD---LLKEFITKLIISFIKLSINRQSPDEREYVMGT-------- 422

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
               I T +   E+ +E         +S      +    L  +       + F+ IL   
Sbjct: 423 ----IMTLKGIGESTFETRYNTEQRNLSSTLD--EVCERLKSVDSRVDLKNIFSNILSYF 476

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             ++              D  +        N Y  +      +E +            N 
Sbjct: 477 DVQKLKTMNPTYTQGLFFDRLVERIEELLWNEYEQVSNWDKAIENF---------VGENS 527

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V IMT+H +KGLE   ++ V      F +                               
Sbjct: 528 VSIMTIHKSKGLEYEAIYFVGLEDGAFWNFRN---------------------------- 559

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                        EE  R  +V ++RA + L      + S  K  NQ+  
Sbjct: 560 -----------QPEEDRRAFFVAISRAKEFLTFSFCKHRSGTKFPNQKHN 598


>gi|149191540|ref|ZP_01869787.1| DNA helicase IV [Vibrio shilonii AK1]
 gi|148834614|gb|EDL51604.1| DNA helicase IV [Vibrio shilonii AK1]
          Length = 689

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 86/248 (34%), Gaps = 20/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  S     +L             ++        ++L  +      I+++    + + 
Sbjct: 329 WQKHLSKWPIAYLKGDEELGSQSENPKLIAWLEQQLDQLISAGLSKKAIQEKIIDEEEYA 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L       +++  K+N  +DF  +I      +           +       ++
Sbjct: 389 RLNSELALCWPCYQAWQKMLKENEQIDFTSMITKATKHVS--------ASRFKSNWKFVM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  + E++++L E          +  TL+AVGD+ QSIY F G++       +
Sbjct: 441 VDEYQDISPDRLELVQALCEQKL----QDGTNATLYAVGDDWQSIYQFTGSDVDLTTGFE 496

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +             SI  L  ++R    +L V                 S  + + ++  
Sbjct: 497 QRFPN--------ASIHLLDTTYRFNDKLLEVASDFIQANPTQLTKDIKSHKSAKQKAVI 548

Query: 302 IGQVGTVQ 309
           + Q   V+
Sbjct: 549 VEQGSRVE 556



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 102/367 (27%), Gaps = 51/367 (13%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++    + L  +S    L   +   +  +I         ++++I  ++   L  +   
Sbjct: 337 PIAYLKGDEELGSQSENPKLIAWLEQQLDQLISAGLSKKAIQEKIIDEEEYARLNSELAL 396

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             P      + LK + +I                    +     +        S +    
Sbjct: 397 CWPCYQAWQKMLKENEQIDFTSMITKATKHVSASRFKSNWKFVMVDEYQDI--SPDRLEL 454

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-----------HVI 485
              + +  L + +   ++ +                       +F               
Sbjct: 455 VQALCEQKLQDGTNATLYAVGDDWQSIYQFTGSDVDLTTGFEQRFPNASIHLLDTTYRFN 514

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFLNFTLRNEQNSY 544
             + E+       +P      I   K  +Q+  I   G+ V  +L+E  + + +      
Sbjct: 515 DKLLEVASDFIQANPTQLTKDIKSHKSAKQKAVIVEQGSRVEKILEELNSKSKQ----GK 570

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           S L    +   +            +  +  MT H++KG E+  V +V      F  K   
Sbjct: 571 SVLLLGRNHYHKPELLGDWCKQFANLSLEFMTCHSSKGKEADYVIVVGADEGQFPAKRKF 630

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                    ++ + L          E  RL YV +TRA +++ +
Sbjct: 631 V------------------------HLNNALTIGTDTYEHAEERRLFYVALTRAKNKVWV 666

Query: 665 CKHSNTS 671
              S+ S
Sbjct: 667 TYQSSPS 673


>gi|12719018|gb|AAK02040.1|AF261825_9 putative helicase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 546

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 94/614 (15%), Positives = 187/614 (30%), Gaps = 105/614 (17%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ--KNIITQEIN-KKSPDLKEKLK 101
              ++A+ L   +     +       + FL +  T +  K I+        S +LKE+++
Sbjct: 15  AAKEQARCLALTAGPGAGKTEMLAQRADFLLRTGTCRYPKRILAISFKVDASKNLKERIQ 74

Query: 102 -----KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE--EAKKKNCVLDFEDLII 154
                +    F          ++       LT    L+  Y   E K     + F DL+ 
Sbjct: 75  RRCGQELASRFDSYTFHAFAKRIIDRFRVVLTGNDALDTDYSIGERKVTRRQITFHDLVP 134

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               +LK   V+   R  I Q  + + +DE QD +  Q+E+++             S+  
Sbjct: 135 LAIQILKASVVA---RNAIRQTYSDVFLDEFQDCTDQQYELVK---------VAFQSTSI 182

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            L AVGD KQ I  + GA         +               + +  +FRS   +L + 
Sbjct: 183 RLTAVGDTKQKIMGWAGALDGIFQTFAKDFS---------AVPLNMYRNFRSKPRLLRMQ 233

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +++  + + A  + +             G+ G V  W+                      
Sbjct: 234 NEIIRVLDPASVMPDHQL---------AGEEGEVFAWQF--------------------- 263

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                 +A   A  +A  I+  I  +          +   +I VLV   K   L      
Sbjct: 264 -----ENAQGEAEYLADLIAGWIRNE---------KVPLSEIAVLVS--KQLDLYANHLM 307

Query: 395 FLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                  I          +T   A + ++     +  Q +  ++V ++            
Sbjct: 308 TALEVRGIPYRNEQEMQDITVEPAARLVVDYLSCLYGQREPKAWVRLMN----------- 356

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
             I     E ++      +       K   + + + E      F    D     L     
Sbjct: 357 QLIPFADDEVQSSARQSFQRFFKEQRKIITMTELLDE-----PFSGWWDSVCSFLKKIGM 411

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                     E    L E +  T    +       +L   L ++              VR
Sbjct: 412 ETLVALSPDYESHARLGEVVRDTKARIEELLELTPDLPQALTRFSDDQ---------AVR 462

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVF--SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           I+T+H +KGLE     ++   +++F       +    +        + +   + + + + 
Sbjct: 463 ILTIHKSKGLEFDSTIIMAVENEIFFGDQDANRCAFFVGVSRAKRRLVVTYAKERDKPDN 522

Query: 632 VSDLIKHLKKSTQE 645
            S + +  + +  E
Sbjct: 523 YSGIWRTNRSAQLE 536


>gi|294631284|ref|ZP_06709844.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
 gi|292834617|gb|EFF92966.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
          Length = 392

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 26/202 (12%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L + YE+ K+   V+DFED+++ T  +L+       I  ++  +  H ++DE QD S 
Sbjct: 216 AQLYSVYEDLKRDRAVIDFEDVLLLTVGILQD---RRDIAEQVRAQYQHFVVDEYQDVSP 272

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++     D             L  VGD  Q+IYSF GA P  +L  +         
Sbjct: 273 LQQRLLELWLGD----------RDDLCVVGDASQTIYSFTGATPDHLLDFR--------V 314

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                ++++L   +RST  ++ + + + +           +   +   S R         
Sbjct: 315 RHPGATVVKLVRDYRSTPQVVHLANGLLAQARGR-----AADHRLELVSQRPAGPEPEYT 369

Query: 311 WEQVVSQHDSQCNPQQESWTSY 332
                         + +   + 
Sbjct: 370 EYTDEPAEAEGAARRIQDLLAA 391


>gi|153870874|ref|ZP_02000180.1| exodeoxyribonuclease V beta subunit [Beggiatoa sp. PS]
 gi|152072657|gb|EDN69817.1| exodeoxyribonuclease V beta subunit [Beggiatoa sp. PS]
          Length = 455

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 36/220 (16%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           +KL   Q       ++       +       +A+   A     K ++ +  F+DL+IN  
Sbjct: 237 DKLLNGQTALADSFEKHLLTLKIQ----LFDIAEQSLAR---KKHQHRIQSFDDLLINLY 289

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG----------- 206
             LK ++    +   I  + +  LIDE QDT  +Q+E+ R +  +               
Sbjct: 290 KALKGKN-GDNLARLIRNKFHAALIDEFQDTDPVQYEIFRRIYGNITTPTNLDPLPKEEG 348

Query: 207 -------KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                  + T S  + LF +GD KQ+IYSF GA+    +   R  Q R T          
Sbjct: 349 IPSGKPDEPTSSQAQILFLIGDPKQAIYSFRGADIFTYMTAYRDAQNRYT---------- 398

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
           L  ++RS AD++  V+++F   ++     + S   ++  +
Sbjct: 399 LATNWRSEADLIGGVNQLFMQTKHPFLFEDISFQPVQAPA 438


>gi|224418267|ref|ZP_03656273.1| putative recombination protein RecB [Helicobacter canadensis MIT
           98-5491]
          Length = 419

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 18/196 (9%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K  +T+E         +     +D F  +++      +   +     L + +   Y +AK
Sbjct: 237 KTWLTKEKITDFKGFGKIPFDERD-FEGLKEALLEVYLDDESQYLKNLYE-IFQVYLQAK 294

Query: 142 ----KKNCVLDFEDLIINTNDLL-KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
               +++  L F  +     +LL KK     ++ +++D  I+HILIDE QDTS++Q+E++
Sbjct: 295 EKYYQQSNTLSFNAVTSKVYELLLKKNFDKEFLYFRLDSTISHILIDEFQDTSILQYEIL 354

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + + ++   GK      R+ F VGD KQSIY F G  P          +  A    Q+  
Sbjct: 355 KPMIDEIKSGKGVKEFLRSFFYVGDIKQSIYRFRGGNPNL-------FKIAADGMKQE-- 405

Query: 257 IIELPLSFRSTADILT 272
              L  ++RS  +++ 
Sbjct: 406 --SLQKNYRSAKNLVE 419


>gi|25027350|ref|NP_737404.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
 gi|23492631|dbj|BAC17604.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens
           YS-314]
          Length = 694

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/463 (15%), Positives = 143/463 (30%), Gaps = 73/463 (15%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A+        Q   +    L            +    +   +K  D+  +++ 
Sbjct: 98  ARTFHAAARKQLMYFWPQVAGDLRWKLLDNKFPLVGRAVRGARLESSTEKVRDILGEIEW 157

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK--KNCVLDFEDLIINTNDLL 160
           ++   I   +++      ++          + A YE+ K   +  +LDF+DL+++T   L
Sbjct: 158 AKASLIA-PEQYPEKLGTRTPPVPAEKVADVYARYEQMKTTGEGLLLDFDDLLLHTAGAL 216

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +       +  +  ++    ++DE QD + +Q  V+ +   +             L  VG
Sbjct: 217 ENSPA---VAEEFREQYRSFVVDEYQDVTPLQQRVLEAWLGE----------RDDLTVVG 263

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  Q+IYSF GA P  +L   R  +          ++++L   +RST  +  + + V + 
Sbjct: 264 DANQTIYSFTGATPHYLLNFSRTYEN--------ATVVKLQRDYRSTPQVTDLANTVIAQ 315

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                                      ++L        + +       +TSY D   +  
Sbjct: 316 ARGRV------------------AGTRLELQGMRAPGPEPE-------FTSYDDEPTE-- 348

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                AR +A  I  ++             + A +I VL R    + +         +D 
Sbjct: 349 -----AREVAGKILTLLDQG----------VAASEIAVLYRINAQSAVFEQAL----SDA 389

Query: 401 KISVVGNDRFILTDHLAIKD-LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
            I               I+  L  L R      D+   V +++  L             Q
Sbjct: 390 GIVYQVRGGEGFFTRAEIRQALSQLVRAAQRDVDETDLVRLVRRTLVPLGLSTQEPEGAQ 449

Query: 460 RHETETVYEYIQKFANCGISKFQ--HVIKYIHELIHIAQFCSP 500
             E       +       ++          + +L    +   P
Sbjct: 450 ERERWQSLNALVDLVEELVTATPDLDFQGLLRKLHERQEAKHP 492



 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 68/271 (25%), Gaps = 44/271 (16%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYI-HELIHIAQFCSPHDFFTLILGAKKG-RQ 515
               +   VY+          ++ +  +  +                    L       Q
Sbjct: 384 QALSDAGIVYQVRGGEGFFTRAEIRQALSQLVRAAQRDVDETDLVRLVRRTLVPLGLSTQ 443

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           +       E    L+  ++        +     +    L +     +  H      V + 
Sbjct: 444 EPEGAQERERWQSLNALVDLVEELVTATPD--LDFQGLLRKLHERQEAKHPPTVEGVTLA 501

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H AKGLE   VFLV          H  K                              
Sbjct: 502 SLHAAKGLEWDAVFLVGLVDSTLPISHAIK------------------------------ 531

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    EE  RL YVG+TRA + L      +     +  ++    +       D  V
Sbjct: 532 ---AGDEAIEEERRLFYVGVTRAREHLFCSWALSRQEGGRKTRKRTRFL-------DGIV 581

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                 +   +           +P +TP ER
Sbjct: 582 IDPAPESGTPRGNRPRNCRVCGNPLDTPAER 612


>gi|256751130|ref|ZP_05492012.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750036|gb|EEU63058.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 220

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 72/180 (40%), Gaps = 25/180 (13%)

Query: 145 CVLDFEDLIINTNDLLKKRDV-----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            ++DF D+      +L + D       + +     ++   I +DE QD++LIQ E++  +
Sbjct: 23  GIIDFNDIEHFALQILTEIDEEGDVNPSEVALYYREKFEEIFVDEYQDSNLIQEEILSII 82

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             +         +P   F VGD KQSIY F  A P     +         + G+K   I 
Sbjct: 83  ARE---------NPPNRFMVGDVKQSIYRFRQANPYIFFEKYNSYS---LDTGEKNQKIL 130

Query: 260 LPLSFRSTADILTVVDKVFSIPE--NAQGLSEDSTTTIRHRSSRIGQV------GTVQLW 311
           L  +FRS  +++  ++ +F      N   ++      + + +            G V+L 
Sbjct: 131 LYKNFRSRIEVIEAINYIFKKIMSKNIGEVNYTEEEKLNYGAEYEIPPEDSVTGGAVELH 190


>gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium
           sticklandii DSM 519]
 gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium
           sticklandii]
          Length = 828

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 110/351 (31%), Gaps = 78/351 (22%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
            ++ P + EK   ++  F ++              +       +   Y    K   ++DF
Sbjct: 150 AREFPYINEKKFDAKAYFEELIKERGLAYSL---GSLADSISEILNLYVAQLKAYNLMDF 206

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
             L++  +   K+      IR + +     I +DEVQDT++I++++I++L +        
Sbjct: 207 TSLVVRVSGAFKQDS----IRQRWESYFEWIELDEVQDTNMIEYKIIKTLFQ-------- 254

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 +   GD  Q+IY + G++P           +        +  +    ++RST  
Sbjct: 255 --KHGNIALFGDIHQTIYEWRGSQP-------NEILRDFKINNPGYDTVRFEENYRSTKL 305

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL   +       + Q + ED+          +       L + + +Q   +        
Sbjct: 306 ILEAAESFLGNNIDNQNVYEDTEKIKVRGFKNLNAEHAYILSKIIENQKMDKA------- 358

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                                                        +  VL R  KD   I
Sbjct: 359 -------------------------------------------YSNQAVLARTNKDAKTI 375

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
                       I V   D+        IK+ +A  + +L+ +D LS   +
Sbjct: 376 GDYLES----NNIPVFVMDKTRFFSREEIKNALAYIKLMLNPKDILSLKRI 422



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 67/233 (28%), Gaps = 38/233 (16%)

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             +  +     +        Q         F  + + +  L  +++   P D     L  
Sbjct: 621 CTLEVLEKVVAKLLEKQAKRQAVFTKYQDYFYPIARNLGILAELSKEKRPQDILHEALIR 680

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-H 569
               +++       +   L E        ++    +L+ L   LE            N  
Sbjct: 681 AGLIEKYSKTSVELLK--LRELYRIFREYDKTEKPTLESLAELLEIASLGNDTDRFLNIK 738

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V ++TVH AKGLE   V+L +   + F     +                         
Sbjct: 739 DQVPVITVHQAKGLEFNTVYLYNATDENFPSSRNQSG----------------------- 775

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                          +E  RL YV +TR    L I         K+ N+ + +
Sbjct: 776 ------------EGLKEEKRLFYVAITRPKSNLYITYSVGEEQAKELNKPSRF 816


>gi|259506511|ref|ZP_05749413.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
 gi|259165931|gb|EEW50485.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
          Length = 677

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 70/463 (15%), Positives = 143/463 (30%), Gaps = 73/463 (15%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
             T    A+        Q   +    L            +    +   +K  D+  +++ 
Sbjct: 81  ARTFHAAARKQLMYFWPQVAGDLRWKLLDNKFPLVGRAVRGARLESSTEKVRDILGEIEW 140

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK--KNCVLDFEDLIINTNDLL 160
           ++   I   +++      ++          + A YE+ K   +  +LDF+DL+++T   L
Sbjct: 141 AKASLIA-PEQYPEKLGTRTPPVPAEKVADVYARYEQMKTTGEGLLLDFDDLLLHTAGAL 199

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +       +  +  ++    ++DE QD + +Q  V+ +   +             L  VG
Sbjct: 200 ENSPA---VAEEFREQYRSFVVDEYQDVTPLQQRVLEAWLGE----------RDDLTVVG 246

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  Q+IYSF GA P  +L   R  +          ++++L   +RST  +  + + V + 
Sbjct: 247 DANQTIYSFTGATPHYLLNFSRTYEN--------ATVVKLQRDYRSTPQVTDLANTVIAQ 298

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                                      ++L        + +       +TSY D   +  
Sbjct: 299 ARGRV------------------AGTRLELQGMRAPGPEPE-------FTSYDDEPTE-- 331

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                AR +A  I  ++             + A +I VL R    + +         +D 
Sbjct: 332 -----AREVAGKILTLLDQG----------VAASEIAVLYRINAQSAVFEQAL----SDA 372

Query: 401 KISVVGNDRFILTDHLAIKD-LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
            I               I+  L  L R      D+   V +++  L             Q
Sbjct: 373 GIVYQVRGGEGFFTRAEIRQALSQLVRAAQRDVDETDLVRLVRRTLVPLGLSTQEPEGAQ 432

Query: 460 RHETETVYEYIQKFANCGISKFQ--HVIKYIHELIHIAQFCSP 500
             E       +       ++          + +L    +   P
Sbjct: 433 ERERWQSLNALVDLVEELVTATPDLDFQGLLRKLHERQEAKHP 475



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 68/271 (25%), Gaps = 44/271 (16%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYI-HELIHIAQFCSPHDFFTLILGAKKG-RQ 515
               +   VY+          ++ +  +  +                    L       Q
Sbjct: 367 QALSDAGIVYQVRGGEGFFTRAEIRQALSQLVRAAQRDVDETDLVRLVRRTLVPLGLSTQ 426

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           +       E    L+  ++        +     +    L +     +  H      V + 
Sbjct: 427 EPEGAQERERWQSLNALVDLVEELVTATPD--LDFQGLLRKLHERQEAKHPPTVEGVTLA 484

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H AKGLE   VFLV          H  K                              
Sbjct: 485 SLHAAKGLEWDAVFLVGLVDSTLPISHAIK------------------------------ 514

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                    EE  RL YVG+TRA + L      +     +  ++    +       D  V
Sbjct: 515 ---AGDEAIEEERRLFYVGVTRAREHLFCSWALSRQEGGRKTRKRTRFL-------DGIV 564

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                 +   +           +P +TP ER
Sbjct: 565 IDPAPESGTPRGNRPRNCRVCGNPLDTPAER 595


>gi|206890653|ref|YP_002248066.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742591|gb|ACI21648.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 554

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/283 (20%), Positives = 94/283 (33%), Gaps = 68/283 (24%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                  YE+ K +  +LDF+DL+I T  LL K+ +            +HI+IDE QD +
Sbjct: 142 TTEFYEKYEQKKIELNLLDFDDLLIKTLHLLNKKIIPPL--------FSHIIIDEFQDIN 193

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ+E+I+ L +             +L   GD  Q+IYSF G+E    L   +  +    
Sbjct: 194 KIQYEIIKKLLK----------KEGSLSVFGDPDQAIYSFRGSEIDLFLNLPKDFKN--- 240

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 ++I L L++RS A+I+   +K  +          +             +   + 
Sbjct: 241 -----LTLINLSLNYRSQANIIYASNKFITANIKRFSKKIEPLR---------QKGSKLT 286

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L E      + +                           I   I + +G          R
Sbjct: 287 LIEVEDEYDEGKT--------------------------IVKEIKSRLGASDFTETYGNR 320

Query: 370 ---VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
                   +  VL R  +   +I            I V    R
Sbjct: 321 EETQCTFSNFAVLARTNRQLKIIKDFL----AKAGIPVKTIRR 359



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 41/204 (20%)

Query: 506 LILGAKKGRQQFISRFGNEVIDVLD--EFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
            IL   +  +   S    E ++ L+     N +   +      L+++ + +++       
Sbjct: 384 KILKDIRLSEFLESSGILEGLNDLEVSMLKNISKSYDTG--KLLEQIHAFIDELSGLTSF 441

Query: 564 AH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                N N V ++T H +KGLE PVVF+      +                         
Sbjct: 442 DLFPENLNAVSLLTFHASKGLEFPVVFITGFEEGLVP----------------------- 478

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                 EE  RL YVGMTRA + LII    N     K       
Sbjct: 479 -------------YTLSSDYDLEEERRLFYVGMTRAMNDLIIIHAKNRLINGKKLSLPIS 525

Query: 683 DMVYDSFHNDERVKKIKLTNSINK 706
             + +       +K++++   + K
Sbjct: 526 SFIKEIPSECIAIKEVRIKKDVPK 549


>gi|167836128|ref|ZP_02463011.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           MSMB43]
          Length = 529

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 87/284 (30%), Gaps = 27/284 (9%)

Query: 17  YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
              +W      +  +      S+   +      ++ L   ++        + L    L  
Sbjct: 239 AAAIWRDERGVLDTLLADAQSSLNQRSHKPDAVSEALDAWARHFEQASAVAALPRAALKL 298

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
             +  +    +          +  +  +     +        +        T    L   
Sbjct: 299 TQSALEKATKKGGATPRHAFFDVAQALEAAVAAVEAAQRARWLSLVEQWLDTAPAELALR 358

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
               K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ + 
Sbjct: 359 ----KRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFAIF 411

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            ++                LF VGD KQ+IYSF  A+                   +  +
Sbjct: 412 DTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARASA 451

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
              L ++ RST  I+   ++VFS    A  L       +R  S 
Sbjct: 452 RYTLAVNQRSTPAIVDACNRVFSANPRAFVLDGLDYEPVRAGSR 495


>gi|200386789|ref|ZP_03213401.1| UvrD/REP helicase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199603887|gb|EDZ02432.1| UvrD/REP helicase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 553

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 97/633 (15%), Positives = 192/633 (30%), Gaps = 106/633 (16%)

Query: 27  QVSDINKYVSLSMETGNP-TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ--KN 83
            V        L++E        ++A+ L   +     +       + FL +  T +  K 
Sbjct: 3   AVDAWLPSDGLTLEPNALLAAKEQARCLALTAGPGAGKTEMLAQRADFLLRTGTCRYPKR 62

Query: 84  IITQEIN-KKSPDLKEKLK-----KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
           I+        S +LKE+++     +    F          ++       LT    L+  Y
Sbjct: 63  ILAISFKVDASKNLKERIQRRCGQELASRFDSYTFHAFAKRIIDRFRVVLTGNDALDTDY 122

Query: 138 E--EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
              E K     + F DL+     +LK   V+   R  I Q  + + +DE QD +  Q+E+
Sbjct: 123 SIGERKVTRRQITFHDLVPLAIQILKASVVA---RNAIRQTYSDVFLDEFQDCTDQQYEL 179

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++             S+   L AVGD KQ I  + GA         +             
Sbjct: 180 VK---------VAFQSTSIRLTAVGDTKQKIMGWAGALDGIFQTFAKDFS---------A 221

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             + +  +FRS   +L + +++  + + A  + +             G+ G V  W+   
Sbjct: 222 VPLNMYRNFRSKPRLLRMQNEIIRVLDPASVMPDHQL---------AGEEGEVFAWQF-- 270

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                                    +A   A  +A  I+  I  +          +   +
Sbjct: 271 ------------------------ENAQGEAEYLADLIAGWIRNE---------KVPLSE 297

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDD 434
           I VLV   K   L             I          +T   A + ++     +  Q + 
Sbjct: 298 IAVLVS--KQLDLYANHLMTALEVRGIPYRNEQEMQDITVEPAARLVVDYLSCLYGQREP 355

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
            ++V ++              I     E ++      +       K   + + + E    
Sbjct: 356 KAWVRLMN-----------QLIPFADDEVQSSARQSFQRFFKEQRKIITMTELLDE---- 400

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
             F    D     L               E    L E +  T    +       +L   L
Sbjct: 401 -PFSGWWDSVCSFLKKIGMETLVALSPDYESHARLGEVVRDTKARIEELLELTPDLPQAL 459

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF--SHKHIKKMHIMPSL 612
            ++              VRI+T+H +KGLE     ++   +++F       +    +   
Sbjct: 460 TRFSDDQ---------AVRILTIHKSKGLEFDSTIIMAVENEIFFGDQDANRCAFFVGVS 510

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
                + +   + + + +  S + +  + +  E
Sbjct: 511 RAKRRLVVTYAKERDKPDNYSGIWRTNRSAQLE 543


>gi|118464110|ref|YP_883291.1| ATP-dependent DNA helicase [Mycobacterium avium 104]
 gi|118165397|gb|ABK66294.1| ATP-dependent DNA helicase [Mycobacterium avium 104]
          Length = 743

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/458 (14%), Positives = 128/458 (27%), Gaps = 74/458 (16%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
           + L+        +  + LL S F        +  I    +    DL  +++ ++   I  
Sbjct: 143 RQLRYFWPRVVGDTGWQLLDSKFAVVARAASRTRINASTDD-VRDLAGEIEWAKASLIGP 201

Query: 111 RDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            +           +         + A YE  K +   +   D            +    +
Sbjct: 202 EEYPAAVAAAGRDIPLDAARVAGVYAAYEALKARGDHVTLLDFDDLLLHTAAAIENDPAV 261

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             +        ++DE QD + +Q  V+ +   D             L  VGD  Q+IYSF
Sbjct: 262 AEEFRDRYRCFVVDEYQDVTPLQQRVLAAWLGD----------RDDLTVVGDANQTIYSF 311

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA P+ +L   R             +++ L   +RST  ++++ ++V +          
Sbjct: 312 TGASPRFLLDFSRRFP--------DATVVRLERDYRSTPQVVSLANQVIAAARGR----- 358

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                 +         G V  +                          +       A  +
Sbjct: 359 --VAGSKLHLVGQRPPGPVPTFH-------------------------EHPDEPAEAAAV 391

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A +I+ +I + T           A +I VL R    + +             I       
Sbjct: 392 AKSIARLIESGTP----------ASEIAVLYRVNAQSEIYEEALTE----AGIPYQVRGG 437

Query: 410 FILTDHLAIKD-LMALGRFILSQEDD------LSFVCMLKSPLFNFSEDDIFKICTQRHE 462
               +   IK  L+AL R    + +D       + V  +  PL   + D+      +   
Sbjct: 438 EGFFNRQEIKQALLALQRAAEREGEDARAEPLPAVVRAVLEPL-GLTADEPVGTRARERW 496

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                                    + EL   A    P
Sbjct: 497 EALRALAELVDDEVARRPQLDFAGLLTELRMRADARHP 534



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 58/248 (23%), Gaps = 40/248 (16%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI----AQFCSPHDFFTLILGAKKG 513
               E    Y+           + +  +  +          A+          +L     
Sbjct: 423 EALTEAGIPYQVRGGEGFFNRQEIKQALLALQRAAEREGEDARAEPLPAVVRAVLEPLGL 482

Query: 514 RQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNE 571
                +     E  + L                     L++EL                 
Sbjct: 483 TADEPVGTRARERWEALRALAELVDDEVARRPQLDFAGLLTELRMRADARHPPVVQG--- 539

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + ++H AKGLE   VFLV          H                             
Sbjct: 540 VALASLHAAKGLEWDAVFLVGLADGTLPISH----------------------------- 570

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
              L         EE  RLLYVG+TRA   L +      S   + +++    +   +   
Sbjct: 571 --ALAHGADSEAVEEERRLLYVGITRARTHLALSWALARSPGGRQSRKPSRFLNGIAPQT 628

Query: 692 DERVKKIK 699
                  +
Sbjct: 629 RAEAAPTR 636


>gi|289661513|ref|ZP_06483094.1| UvrD/REP helicase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 547

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/601 (12%), Positives = 164/601 (27%), Gaps = 134/601 (22%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-----LTL 129
           T+    + + + +    + P     +    D    +R R      F              
Sbjct: 41  TELLAQRADFVLRTGTSRYPKKILAISFKTDAAHTLRRRVRDRSGFDHAHRLNSMTFDAF 100

Query: 130 AKYLNAHYEEAKKKNCVLD----------------FEDLIINTNDLLKKRDVSAWIRYKI 173
           A+ + A Y    K    LD                F++L+     L+++  +   I+  I
Sbjct: 101 ARRIIAIYRPLLKPKDRLDHGFKVGVNRVDTIQVAFKELVPLAQQLIEQHPM---IKRSI 157

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
           +   +H+ +DE QD +  Q+++I +L +D         +P ++ AVGD KQ I  + GA 
Sbjct: 158 NMAYSHVFLDEFQDCTSAQYKLIHTLFKD---------TPTSITAVGDAKQKIMGWAGAL 208

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
              + +                 ++ L  ++RS   I  V +++ S  E           
Sbjct: 209 DGVMGKFADEFP---------AVVLRLVQNWRSAPAIRRVQNRMISQME----------- 248

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                                    +S               L + ++    A RIA  I
Sbjct: 249 ------------------------PESAVAESDIVGEEGKVYLARFANEQAEATRIAEKI 284

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-L 412
              I             I   +I +L  +   + +         +   I          L
Sbjct: 285 EEWIAEG----------IAPHEIAILHIR--QSAMFNQAIDCELDRLNIPRRNEQELQDL 332

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                 + ++ + R +  +    ++  +L                               
Sbjct: 333 VSEPVTEFVVNILRVLGHKPAPSAYTSLLYV----------------------------- 363

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                  +    ++ +            HD   +     +     I          +   
Sbjct: 364 LTAQDDGEQGDWVRLLSAARDRVAQGPAHDRAEIAFKQLQEVMALI---------PIATL 414

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA------NHNEVRIMTVHTAKGLESP 586
           L+ +   +    + +   + E+                   +   VR+MT+H  KG+E  
Sbjct: 415 LSLSAEYDAARIAEILGQVYEVLGRFIGQHHDLDQALARFLDEGSVRVMTIHKCKGMEFE 474

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V L  T  + +     +  +            + +  +  R+       +       +E
Sbjct: 475 CVVLPCTEQETWWGDRDENRNAYFVGVSRAKQNLVVTYADRRSKPTQASSRWETTRRPQE 534

Query: 647 Y 647
            
Sbjct: 535 E 535


>gi|156977336|ref|YP_001448242.1| DNA helicase IV [Vibrio harveyi ATCC BAA-1116]
 gi|156528930|gb|ABU74015.1| hypothetical protein VIBHAR_06122 [Vibrio harveyi ATCC BAA-1116]
          Length = 689

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 107/351 (30%), Gaps = 26/351 (7%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        +    ++     +   +L        +++++   ++ + 
Sbjct: 329 WQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDNQLSQLAAVGLTKKQVQEKLVNHQDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L     + +++  K+   +DF  +I    D +KK         K       I+
Sbjct: 389 RLNSELALCWPCFSAWQKMLKETNQVDFPTMISRATDYVKK--------GKYISPWRFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  +I +L E             TLFAVGD+ Q+IY F GA+       +
Sbjct: 441 VDEYQDISPDRLALIEALCESTEKQAGA-----TLFAVGDDWQAIYQFAGADVDLTTGFQ 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V +       +    + +S    + +S  
Sbjct: 496 DRF--------THSTVHHLDTTYRFNNQIGDVANTFVQENPSQLPKTLNSHKQRKQKSVH 547

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                 V+  + +   +      +             +     L R     I  M    +
Sbjct: 548 TAPSNQVE--KILEQLNQQAKKTKSVLLLGRNHYHKPDLYDDWLKRFPKLEIRFMTCHAS 605

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                   +I + D      K+K    I       K+          R   
Sbjct: 606 KGREADFVIILSVDEGQFPAKKKQ-AHIDGALSESKDK--YPYAEERRLFY 653



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 24/143 (16%)

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           +++ L    +  + + S L    +   +              E+R MT H +KG E+  V
Sbjct: 554 VEKILEQLNQQAKKTKSVLLLGRNHYHKPDLYDDWLKRFPKLEIRFMTCHASKGREADFV 613

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            ++      F                           K + +I   L +   K    E  
Sbjct: 614 IILSVDEGQFP------------------------AKKKQAHIDGALSESKDKYPYAEER 649

Query: 649 RLLYVGMTRASDQLIICKHSNTS 671
           RL YV +TRA +++ I      S
Sbjct: 650 RLFYVALTRAKEKVWITHTGAGS 672


>gi|282855692|ref|ZP_06265000.1| ATP-dependent DNA helicase [Pyramidobacter piscolens W5455]
 gi|282586471|gb|EFB91731.1| ATP-dependent DNA helicase [Pyramidobacter piscolens W5455]
          Length = 360

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 101/358 (28%), Gaps = 20/358 (5%)

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               ++   + R ++  D+ VL   R          +   +   +               
Sbjct: 18  QEAKVWDRDRLRPVRWGDMAVLTPTRSSY----ENLQRAFSLCGVPAAFTGGRSFYARPE 73

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           I+D  AL  F+    D  +    L SP       D+  +       E +           
Sbjct: 74  IRDACALCAFLADPRDRTALAGFLCSPFSGLPLADVQALLPFLDRGEPL--------KTL 125

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             ++      +  L   A    P      +L      +    +     +  L   +    
Sbjct: 126 AERWPGPAAKLRALARQAMLEGPSSALASLLARGDCLKSVHPKRRAAALANLRRAVALLE 185

Query: 538 RNEQNSYSSLQELISELEQY----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
             E     S   + + L           + +  A  + V++MT+H +KGLE P+V +   
Sbjct: 186 AYEAGVAPSPAGVAAYLRSALRRGAADPEASAEAGGDTVKVMTIHASKGLEFPLVAVFGL 245

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                +    K +     L                           +    EE  RL YV
Sbjct: 246 EHGGRAGAREKGVVPSRHLLAAAPRFPDNWPEGDCLLGKVHARLDERAE-YEERTRLYYV 304

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            +TRA D LI+C       ++    R+   ++       E V      +    D W+ 
Sbjct: 305 ALTRARDGLILCGLMPGGEKRAEKDRS---LLSIERAGGEFVPAPGEVSRREADAWLR 359


>gi|224282555|ref|ZP_03645877.1| DNA helicase II [Bifidobacterium bifidum NCIMB 41171]
 gi|310287017|ref|YP_003938275.1| DNA helicase II containing UvrD/REP helicase domain
           [Bifidobacterium bifidum S17]
 gi|309250953|gb|ADO52701.1| DNA helicase II containing UvrD/REP helicase domain
           [Bifidobacterium bifidum S17]
          Length = 499

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 90/272 (33%), Gaps = 64/272 (23%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE  K     +DF+D+++    ++   +    +   I   I  + +DE QD S 
Sbjct: 180 ADVITAYEWEKTVRGQIDFDDILLLMCHVMDDYEE---LAASIRSSIGWLTVDEYQDVSP 236

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++     +           R +  VGD  Q+IYSF GA    +L      +  A +
Sbjct: 237 LQHRLMTLWLGN----------NRNVCVVGDPAQTIYSFAGASSYDLLHFADEFRPLAAD 286

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L   +RST  ++   ++V +               +  RS+R G       
Sbjct: 287 -------VTLNTDYRSTPQVVRYANRVLAAAPER-------EQYLVLRSARSGGP----- 327

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                               + +D+  +E      AR IA  I+ ++             
Sbjct: 328 ----------------RVGHTCYDTDEEE------ARGIAARIARLVAGG---------- 355

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
           +      VL R     P I    R     Y++
Sbjct: 356 VDPGACAVLTRINAQQPAICAALRAEGLRYRV 387



 Score = 44.9 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 35/113 (30%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            SA  + V + T+H +KGLE P VF+V     +  +                        
Sbjct: 414 LSAAASSVTVSTIHASKGLEFPYVFIVGCSEGLIPYG----------------------- 450

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                         +     EE  RLLYVG+TRA D L +          + N
Sbjct: 451 ------------ASIAGEALEEERRLLYVGVTRAEDGLHMSYARAKDEGSRPN 491


>gi|226325450|ref|ZP_03800968.1| hypothetical protein COPCOM_03255 [Coprococcus comes ATCC 27758]
 gi|225206193|gb|EEG88547.1| hypothetical protein COPCOM_03255 [Coprococcus comes ATCC 27758]
          Length = 1034

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 196/689 (28%), Gaps = 78/689 (11%)

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +W    +   +    +   ++       Q +     A      +        I    +K+
Sbjct: 279 VWRFKNAPALAFLEKELFRYSGRTYREKQSNVRVYAAANPRMEVE--CAAQRIRFLIRKK 336

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + ++I V+     D  L       +  +Y+I V  + +  +  +  ++ + +L     
Sbjct: 337 EYRYREIAVIA---SDMNLYADEIEKIFREYEIPVFMDYKRNVLLNSFVEYIRSLLAMAE 393

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDI-----FKICTQRHETETVYEYIQKFANCGISKFQHV 484
                 S    L++ L  F+ +++     + +       +   E   + A     +   V
Sbjct: 394 QNFSAESVFRFLRTDLVGFTGEELDLLENYVLALGIRGYKKWQEKWIRRAKDTTEEELEV 453

Query: 485 IKYIHELIHIAQFCSPHDF-------------FTLILGAKKGRQQF-------------- 517
           + ++                                L  ++ ++Q               
Sbjct: 454 LNHLRVCFVEKTEDLVFVLKQRQKTVRDVTLAICEFLEKEEIQKQVKVLENQFTEAGELA 513

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMT 576
           +++   ++  V+ E  +  +    +   +L+E    L+      +        +EV    
Sbjct: 514 LAKEYAQIYRVVMELFDKFVSLLGDERIALKEYRELLDAGMEEARIGVITPSLDEVMAGD 573

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHK-HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           +   +  +   + L+     +         +             I +       + +   
Sbjct: 574 IERTRLKDIRALILLGVNDSLIPGNASAGGLISDRDRERFEERGIALAPGTREKSYIQKF 633

Query: 636 IKHLKKSTQEEYNRLLYV---GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
             +L  +   E   L Y       ++     +         K S        +       
Sbjct: 634 YLYLHMTKPTEELMLTYSKVSADGKSRRAAYLIGDLKRMYTKLSVFNMDQYGMETKEMLP 693

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHH----PENTPLEREETIKQLMDEQKIPKKLFSPIK 748
           +      +    N  +     W   +     +    E+   + ++   ++    L     
Sbjct: 694 QTGIGSLIEGLQNPKKMEEGSWQELYRWYCAQEDWNEKVHDLARINRYRRPEDNLTLQTA 753

Query: 749 NDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIFTLP 797
             +   +  + S ++                  E  + +    + G I HK L+      
Sbjct: 754 RKLYGDWAPSISRLEKFAACACAHFLTYGLRLKEREVYEFAALDFGNIFHKALEKYARRV 813

Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN--------PMMTTAMSCDSYSEV 849
           E +   +      +  +       ++++     ++ +        P M   M+   ++  
Sbjct: 814 EREGLEWTEVTKEQQEQFASESVDESIVDYSNTVIYSSARNAYIVPRMKRMMNRTVWAMT 873

Query: 850 SVSGKINCPKKDIII---SGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIA 902
               K +   +   +   SG+ID+I    ++  ++  I +YKT      ++    +    
Sbjct: 874 KQLRKGSFKPEGYEVSFGSGKIDRIDTCETEDQVYVKILDYKTGAKSF-DMAAFYHGLQM 932

Query: 903 QLSIYE-KIL---KDSYPNKSLV-CLLIY 926
           QL +Y  + +   +  +P K +V   + Y
Sbjct: 933 QLVVYMEEAVRLEERKHPGKKIVPAGIFY 961


>gi|153833304|ref|ZP_01985971.1| helicase IV [Vibrio harveyi HY01]
 gi|148870440|gb|EDL69361.1| helicase IV [Vibrio harveyi HY01]
          Length = 689

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 107/351 (30%), Gaps = 26/351 (7%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        +    ++     +   +L        +++++   ++ + 
Sbjct: 329 WQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDNQLSQLAAVGLTKKQVQEKLVNHQDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L     + +++  K+   +DF  +I    D +KK         K       I+
Sbjct: 389 RLNSELALCWPCFSAWQKMLKETNQVDFPTMISRATDYVKK--------GKYISPWRFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  +I +L E             TLFAVGD+ Q+IY F GA+       +
Sbjct: 441 VDEYQDISPDRLALIEALCESTEKQAGA-----TLFAVGDDWQAIYQFAGADVDLTTGFQ 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V +       +    + +S    + +S  
Sbjct: 496 DRF--------THSTVHHLDTTYRFNNQIGDVANTFVQENPSQLPKTLNSHKQRKQKSVH 547

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                 V+  + +   +      +             +     L R     I  M    +
Sbjct: 548 TAPSNQVE--KILDQLNQQAKKTKSVLLLGRNHYHKPDLYDDWLKRFPKLEIRFMTCHAS 605

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                   +I + D      K+K    I       K+          R   
Sbjct: 606 KGREADFVIILSVDEGQFPAKKKQ-AHIDGALSESKDK--YPYAEERRLFY 653



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 107/378 (28%), Gaps = 46/378 (12%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +     +    ++    D L   S    L   +   +S +          +++++
Sbjct: 323 PTNFKRWQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDNQLSQLAAVGLTKKQVQEKLV 382

Query: 372 QAKDILVLVRKRK-DTPLITFLTRFLKNDYKISV-----VGNDRFILTDHLAIKDLMALG 425
             +D   L  +     P  +   + LK   ++          D      +++    + + 
Sbjct: 383 NHQDYTRLNSELALCWPCFSAWQKMLKETNQVDFPTMISRATDYVKKGKYISPWRFIMVD 442

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ--- 482
            +     D L+ +  L       +   +F +                       +F    
Sbjct: 443 EYQDISPDRLALIEALCESTEKQAGATLFAVGDDWQAIYQFAGADVDLTTGFQDRFTHST 502

Query: 483 --------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFL 533
                        I ++ +     +P      +   K+ +Q+   +   N+V  +LD+  
Sbjct: 503 VHHLDTTYRFNNQIGDVANTFVQENPSQLPKTLNSHKQRKQKSVHTAPSNQVEKILDQLN 562

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                    + S L    +   +              E+R MT H +KG E+  V ++  
Sbjct: 563 QQAK----KTKSVLLLGRNHYHKPDLYDDWLKRFPKLEIRFMTCHASKGREADFVIILSV 618

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               F                           K + +I   L +   K    E  RL YV
Sbjct: 619 DEGQFP------------------------AKKKQAHIDGALSESKDKYPYAEERRLFYV 654

Query: 654 GMTRASDQLIICKHSNTS 671
            +TRA +++ I      S
Sbjct: 655 ALTRAKEKVWITHTGAGS 672


>gi|327540076|gb|EGF26671.1| ATP-dependent DNA helicase, UvrD/REP family [Rhodopirellula baltica
           WH47]
          Length = 621

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/379 (14%), Positives = 120/379 (31%), Gaps = 23/379 (6%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETG----NPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
            D+      +V ++ +   ++  +G         K      +++        F  L    
Sbjct: 244 ADVERWDQLKVPELPESADITRTSGMLRSADVPQKSLVKALESAADSLEIRDFGPLVEAT 303

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           LT+    +  +  +E+          L    D   ++    +   +     A+ TL  + 
Sbjct: 304 LTKNIA-KARLHGEEVKFGRSKFPPGLDPEFDLIYEVARHESLSLLRAQNQATGTLVDHY 362

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
           +   +  K+    L F+D+ +    +  + D    ++ ++D  I+H+L+DE QDTS +QW
Sbjct: 363 DTLIQLVKQAQRALAFDDIAVRLAGVFTQLDNHT-LQDRLDASIDHLLLDEFQDTSPVQW 421

Query: 194 EVIRSLTE-------DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           +V+R L +       D           ++ F VGD KQ+IY + G   +      +    
Sbjct: 422 QVLRLLAQSVTGESTDSSSNVLDPKRSKSFFCVGDTKQAIYGWRGGVAEIFDAVDKQIPG 481

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV- 305
             +             S+RS++ +L  V   F                   +++   +  
Sbjct: 482 IISKQQ--------DESYRSSSVVLDAVTDAFQHLPRHPMAKGTDPPNPADKATYEAKAL 533

Query: 306 -GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
               + + +  +        Q  +              +      A     ++       
Sbjct: 534 KRFAKRFPKHTAARKLPGFVQFRTAELNLKPPADSDEKTKSKPSAADIQKGLLDDVAKHI 593

Query: 365 NGKKRVIQAKDILVLVRKR 383
                      I VL R  
Sbjct: 594 AELHHQSPHLTIGVLTRTN 612


>gi|88860136|ref|ZP_01134775.1| DNA helicase IV [Pseudoalteromonas tunicata D2]
 gi|88818130|gb|EAR27946.1| DNA helicase IV [Pseudoalteromonas tunicata D2]
          Length = 707

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 77/205 (37%), Gaps = 24/205 (11%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
            L + ++ +      +   F+      +      L K L   Y+    +   +DF+D+I 
Sbjct: 362 GLFDLIRSAASALSGVPQYFDDKCTQATLEHYFMLVKPLIDAYQSKLHQQQAVDFDDMIF 421

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
             ++++           K      HIL+DE QD S  + +++++L +        ++   
Sbjct: 422 QAHNMIHT--------GKFKAPWLHILVDEFQDISEPRAQLLKALRD--------NTHGS 465

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            LFAVGD+ QSIY F G+    + + +R               + L  +FR    I  V 
Sbjct: 466 VLFAVGDDWQSIYRFSGSNHHFITQFQRYFGAS--------CTVNLDQTFRFNNKIAEVA 517

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRS 299
           ++             +S     H S
Sbjct: 518 NRFVMQNPAQMKKELNSKVIQSHSS 542



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 66/253 (26%), Gaps = 36/253 (14%)

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC-GISKF 481
            L + +           +            I++     H   T ++     +    + + 
Sbjct: 453 QLLKALRDNTHGSVLFAV------GDDWQSIYRFSGSNHHFITQFQRYFGASCTVNLDQT 506

Query: 482 QHVIKYIHELIHIAQFCSPH----DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                 I E+ +     +P     +  + ++ +             +    +   ++   
Sbjct: 507 FRFNNKIAEVANRFVMQNPAQMKKELNSKVIQSHSSVTIITDFNTEKQNANVQAIIDALS 566

Query: 538 RNEQNSYSS---LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
             ++   +S   L      L              H  +   TVH++KG E+  V LV   
Sbjct: 567 FIDKTQKASVYILARFSFLLPNAAQMGLLTQRFKHLIIESYTVHSSKGKEADYVILVGLS 626

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                       P  ++ N I    +         E  RL YV 
Sbjct: 627 EGK----------------------YGFPAKQNHNLIFDAFLPPQDDYLFAEERRLFYVA 664

Query: 655 MTRASDQLIICKH 667
           +TRA   + +   
Sbjct: 665 LTRAKKHVYLIIP 677


>gi|84390463|ref|ZP_00991474.1| helicase IV [Vibrio splendidus 12B01]
 gi|84376723|gb|EAP93599.1| helicase IV [Vibrio splendidus 12B01]
          Length = 691

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 99/314 (31%), Gaps = 21/314 (6%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  S     +LT       ++   ++        E+L  S     +++ +   ++ + 
Sbjct: 329 WQKHLSKWPIAYLTGDDELGSHVSNLKLIGWLEKQLEQLNASGLSKKEVQQQLIDHRDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K+   +DF  +I      ++K         K       I+
Sbjct: 389 RLNSELSLCWPCVTAWQKELKEQNHIDFSTMISRATQYVEK--------GKFISPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  +  ++ +L               ++FAVGD+ QSIY F GA+       K
Sbjct: 441 IDEYQDISPDRLALVEALCNQSKAQHQA-----SIFAVGDDWQSIYQFAGADVDLTTGFK 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
              +          +I  L  ++R    +  V ++             +S    + ++  
Sbjct: 496 DRFESS--------TIHHLDTTYRFNNQLGAVANRFVQENPIQLPKELNSFKQQKQKAVY 547

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                 V+     +++       +             E          +  I  M    +
Sbjct: 548 SAPSKEVEKILDQLNRQSKGKTNKSVLLLGRNHYHKPELLEDWKKIFTSIDIKFMTCHGS 607

Query: 362 IFSNGKKRVIQAKD 375
                   +I   D
Sbjct: 608 KGKEADFVIILCVD 621



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/382 (13%), Positives = 108/382 (28%), Gaps = 50/382 (13%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L    S   L   +   +  +  +       ++++I  +D   L  +   
Sbjct: 337 PIAYLTGDDELGSHVSNLKLIGWLEKQLEQLNASGLSKKEVQQQLIDHRDYTRLNSELSL 396

Query: 385 DTPLITFLTRFLKNDYKISV--------VGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             P +T   + LK    I             ++           +           D L+
Sbjct: 397 CWPCVTAWQKELKEQNHIDFSTMISRATQYVEKGKFISPWKFIMIDEYQDI---SPDRLA 453

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-----------HVI 485
            V  L +      +  IF +                       +F+              
Sbjct: 454 LVEALCNQSKAQHQASIFAVGDDWQSIYQFAGADVDLTTGFKDRFESSTIHHLDTTYRFN 513

Query: 486 KYIHELIHIAQFCSPHDFFTLILG-AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
             +  + +     +P      +    ++ ++   S    EV  +LD+    +    + + 
Sbjct: 514 NQLGAVANRFVQENPIQLPKELNSFKQQKQKAVYSAPSKEVEKILDQLNRQSKG--KTNK 571

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           S L    +   +              +++ MT H +KG E+  V ++      F      
Sbjct: 572 SVLLLGRNHYHKPELLEDWKKIFTSIDIKFMTCHGSKGKEADFVIILCVDEGQFP----- 626

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                K + +I   L +        E  RL YV MTRA +++ I
Sbjct: 627 -------------------TKKKQLHIDGALTESSDAFPYAEERRLFYVAMTRAKEKVWI 667

Query: 665 CKHSNTSNEKKSNQRTWYDMVY 686
               + S   +    + Y +V 
Sbjct: 668 THSGDGSGFVQELHGSDYPVVR 689


>gi|241204304|ref|YP_002975400.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858194|gb|ACS55861.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 972

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 91/292 (31%), Gaps = 27/292 (9%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
           FG+    + + + + +   P+         +    E          +T     Q   +  
Sbjct: 422 FGVRRQTASDGVERLITA-PFVDRDKYLAGMEWKREIHTTHETTLIETYSYERQEGRLLT 480

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE--------FIKIRDRFNT 116
             +      +T K  P + I  + +  K  D   +L  +                 +   
Sbjct: 481 VLAEKLENHVTLKPRPVEEIFDRVVELKQVDTFSQLLGTFLRKYKSGGYAISGCAAKAER 540

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            K      A L++   +   YE+  K    +DFED+I+     ++          +    
Sbjct: 541 LKQGARAEAFLSVFAPVFEEYEKRLK--GRIDFEDMILRAAQYVE--------ARQYHSP 590

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             HIL+DE QD S  +  ++++L                +FAVGD+ QSI+ F G++   
Sbjct: 591 FRHILVDEFQDISQSRGRLVKALK--------VQHPDVRIFAVGDDWQSIFRFAGSDIHL 642

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           +                    ++L  +FRS   I                  
Sbjct: 643 MRNFGDEFGGSFDGETGVHRTVDLGRTFRSVDQIAFAARTFVLKNPAQIEKQ 694


>gi|313139710|ref|ZP_07801903.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132220|gb|EFR49837.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 502

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 90/272 (33%), Gaps = 64/272 (23%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE  K     +DF+D+++    ++   +    +   I   I  + +DE QD S 
Sbjct: 183 ADVITAYEWEKTVRGQIDFDDILLLMCHVMDDYEE---LAASIRSSIGWLTVDEYQDVSP 239

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++     +           R +  VGD  Q+IYSF GA    +L      +  A +
Sbjct: 240 LQHRLMTLWLGN----------NRNVCVVGDPAQTIYSFAGASSYDLLHFADEFRPLAAD 289

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L   +RST  ++   ++V +               +  RS+R G       
Sbjct: 290 -------VTLNTDYRSTPQVVRYANRVLAAAPER-------EQYLVLRSARSGGP----- 330

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                               + +D+  +E      AR IA  I+ ++             
Sbjct: 331 ----------------RVGHTCYDTDEEE------ARGIAARIARLVAGG---------- 358

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
           +      VL R     P I    R     Y++
Sbjct: 359 VDPGACAVLTRINAQQPAICAALRAEGLRYRV 390



 Score = 44.9 bits (104), Expect = 0.070,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 35/113 (30%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            SA  + V + T+H +KGLE P VF+V     +  +                        
Sbjct: 417 LSAAASSVTVSTIHASKGLEFPYVFIVGCSEGLIPYG----------------------- 453

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                         +     EE  RLLYVG+TRA D L +          + N
Sbjct: 454 ------------ASIAGEALEEERRLLYVGVTRAEDGLHMSYARAKDEGSRPN 494


>gi|110680616|ref|YP_683623.1| UvrD/REP helicase, putative [Roseobacter denitrificans OCh 114]
 gi|109456732|gb|ABG32937.1| UvrD/REP helicase, putative [Roseobacter denitrificans OCh 114]
          Length = 549

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 98/639 (15%), Positives = 197/639 (30%), Gaps = 105/639 (16%)

Query: 27  QVSDINKYVSLSMETGN-PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT---PQK 82
            V   +    L++E        + A+ L   +     +       + FL +  T   P++
Sbjct: 3   AVERWSPVDGLTLEPNALAAATEIARNLALTAGPGAGKTEMLAQRADFLLRTGTCRYPRR 62

Query: 83  NIITQEINKKSPDLKEKLKK-----SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
            +        S +LK +++K         F          ++       L+    LN  Y
Sbjct: 63  ILAISFKTDASQNLKARVRKRCGPGLAARFDSYTFHAFAKRIIDRFRPVLSGRDALNPDY 122

Query: 138 EE--AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
                + ++  + F D++     +++   V+   R  + Q  +H+ +DE QD +  Q+ +
Sbjct: 123 SIGPRRVQHQSITFADMVPLACKIIEDSLVA---RNAVRQTYSHVFLDEFQDCTDEQYRL 179

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I +         +   +P  L AVGD KQSI  + GA                 N     
Sbjct: 180 ILA---------SFGDTPTILTAVGDTKQSIMGWAGALEGIFHTFADAFDALPRN----- 225

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L  +FRS   +  + + +                              V      +
Sbjct: 226 ----LYQNFRSAPALRRMQNAMVK----------------------------VMDPPAAL 253

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
              D   +  +     + D   +       A  +A  I ++I             I+  +
Sbjct: 254 DDADIIGDEGEICILRFEDDDDE-------ASGLAERIRDLIDDG----------IEPSE 296

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDD 434
           I +LV   K   L   L        +I     D +  L        L+            
Sbjct: 297 IAILVS--KQQSLYCRLLVAAFEAEEIPFREEDTKQDLASEPVASLLIDFLLIASGSRQP 354

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
            ++  +L   +FN   D+      + ++  + ++         I+  +  ++ + +L  +
Sbjct: 355 SAYRRLLDLVVFNHGYDE-----EREYQLRSRWDRFVNETKQKIAAHKLDLRQMDDLQAL 409

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           A           ++               E  D  DE +  TL +      S  +  + L
Sbjct: 410 AIS---------LVDNVGRDSLISLSPDYEHGDRFDELIAQTLEHAHMLLQSQADSSTAL 460

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
             +         +  + VRIM+VH +KGLE   V ++    + F  +   +         
Sbjct: 461 ASF---------SGDSAVRIMSVHKSKGLEFDTVVILGVEKETFWGEPSAEHAAYFVAIS 511

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                + +     R          +K+   +E+  L YV
Sbjct: 512 RAKQRLLLTTCSQRQRPQGAKRWSIKRHEYDEF--LAYV 548


>gi|120402806|ref|YP_952635.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119955624|gb|ABM12629.1| ATP-dependent DNA helicase, Rep family [Mycobacterium vanbaalenii
           PYR-1]
          Length = 710

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/479 (13%), Positives = 131/479 (27%), Gaps = 87/479 (18%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
           E G  T   +AQT   A++ Q       ++ +       +    +         P   + 
Sbjct: 89  EAGASTAAVQAQTFHAAARRQLSYFWPRVVGTTDWQLMDSKFAVVAQAANRAGLPTGTDN 148

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASL--------TLAKYLNAHYEEAKKKNCVLDFED 151
           ++    E    +    T + +   +A +             +  +YE  K +       D
Sbjct: 149 VRDLAGEIEWAKASLITPEGYPQAVADVGRDIPFDAAKVAAVYGNYESLKSRRN-----D 203

Query: 152 LIINTNDLLKKRDVS-----AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +++   D L     +       +  +        ++DE QD + +Q  V+ +        
Sbjct: 204 VMLLDFDDLLLHTAAAIENDPAVAQEFRDRYRCFVVDEYQDVTPLQQRVLDAWLG----- 258

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    L  VGD  Q+IYSF GA P+ +L   R             +++ L   +RS
Sbjct: 259 -----GRDDLTVVGDANQTIYSFTGASPRYLLDFSRRFP--------DAAVVRLERDYRS 305

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T  ++++ ++V +           + + +     R      V                  
Sbjct: 306 TPQVVSLANRVIAAARGRM-----AGSRLHLVGQRPPGPDPV------------------ 342

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                      +       A  +A +I+ ++ + T           A +I VL R    +
Sbjct: 343 ---------FKEYPDEVAEATAVARSIAKLVESGTA----------ASEIAVLYRINAQS 383

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG-----RFILSQEDDLSFVCML 441
            +             I+              I+  +        R +    D L      
Sbjct: 384 EVYEEALTE----AGIAFQVRGGEGFFSRQEIRQALLALQRLAERGLQDTADSLPEFVRA 439

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                  + +       +      V                 +   + EL   A    P
Sbjct: 440 ALEPLGLTAEPPPGAQARDRWEALVALAELVDDEVAQRPQLDLHGLLAELRQRADSRHP 498



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 81/334 (24%), Gaps = 47/334 (14%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC---SPHDFFTLILGAKKGR 514
               E    ++           + +  +  +  L          S  +F    L      
Sbjct: 388 EALTEAGIAFQVRGGEGFFSRQEIRQALLALQRLAERGLQDTADSLPEFVRAALEPLGLT 447

Query: 515 QQFISRFGNEVIDVLDEFLNFTL----RNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
            +     G +  D  +  +           Q     L  L++EL Q   +          
Sbjct: 448 AE--PPPGAQARDRWEALVALAELVDDEVAQRPQLDLHGLLAELRQRADSRHPPVVQG-- 503

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V + ++H AKGLE   VFLV          H                            
Sbjct: 504 -VTLASLHAAKGLEWDAVFLVGLADGTLPISH---------------------------- 534

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDS 688
               L         EE  RLLYVG+TRA   L +           +      + + +   
Sbjct: 535 ---ALAHGPDSEPVEEERRLLYVGVTRARVHLTLSWALARKPGGRQGRRPSRFLNGIAPQ 591

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE--QKIPKKLFSP 746
              D+   K +          +     T  P       E     + ++    +       
Sbjct: 592 SQRDDGPSKPRKPRGPAPRCRVCNAALTSPPAIMLRRCETCPSDIDEQLLADLKDWRLRI 651

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
            K      Y++           +L S  +     
Sbjct: 652 AKEMNVPAYVVFTDNTLIAIAESLPSDDAALVAI 685


>gi|187930241|ref|YP_001900728.1| UvrD/REP helicase [Ralstonia pickettii 12J]
 gi|187727131|gb|ACD28296.1| UvrD/REP helicase [Ralstonia pickettii 12J]
          Length = 557

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 93/689 (13%), Positives = 200/689 (29%), Gaps = 148/689 (21%)

Query: 27  QVSDINKYVSLSMETGNP-TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT---PQK 82
            V        L++E        ++ ++L   +     +       + FL +  T   P++
Sbjct: 3   AVDAWQPADGLTLEPNALLAAKEQVRSLALTAGPGAGKTEMLAQRADFLLRTGTCCYPKR 62

Query: 83  NIITQEINKKSPDLKEKLK-----KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
            +        S +LKE++K     +    F          ++       LT    L+  Y
Sbjct: 63  ILAISFKVDASSNLKERVKRRCGSEMAARFDSYTFHAFAKRIIDRFRPVLTGQDALDVGY 122

Query: 138 ----EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
                + K     ++F DL+     +L+K  ++   R  + Q  + + +DE QD + +Q+
Sbjct: 123 KIVERKVKPSRQEIEFADLVPLAIKILRKSAMA---RNAVRQTYSDVFLDEFQDCTNLQY 179

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+++              +   L AVGD KQ I  + GA                     
Sbjct: 180 ELLKL---------AFQGTSIRLTAVGDTKQKIMGWAGAMDGIFQAFVADF--------- 221

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             + + +  +FRS   +L + +++    + +  +  +            G  G V  W  
Sbjct: 222 AATPLNMYRNFRSKPRLLRLQNEIVRRLDPSSVMPNEQL---------AGDEGEVFAWRF 272

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
             S+ +++                       LA  I   I                 +  
Sbjct: 273 DDSRQEAE----------------------HLAELIDGWIK-------------TEQLPP 297

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQE 432
            +I VL+R      L             I      R   +T   A + ++     +  Q 
Sbjct: 298 AEIAVLIRN--QLDLYADHLMAALEARGIPYRNEQRLQDITVEPAARLIVDYLTCLYGQR 355

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           +  +++ ++   +    E+                      A      F    +++   +
Sbjct: 356 EPKAWIRLMNQLIPFADEEIQSNARKDLDRLIKQQRKEVVIAELVAEPFSGWWEFVRAFL 415

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
                 +             GR + + R        ++E L      E +   +L+    
Sbjct: 416 KQVSIETLVSLSPD--YESHGRLKEVVRDTKIR---IEELLKL----EPDLPEALERF-- 464

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                         ++   VRI+T+H +KGLE   V ++    ++F              
Sbjct: 465 --------------SDDQAVRILTIHKSKGLEFDSVVIMAVEKEIFFGDQ---------- 500

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                           +E     +VG++RA  +L++        
Sbjct: 501 --------------------------------DENRCAFFVGVSRAKRRLVLTHADQRER 528

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                +R        + +    +  ++  
Sbjct: 529 PAGHTRRWDVQRTAQTEYFGYAMPFVRQE 557


>gi|41409395|ref|NP_962231.1| hypothetical protein MAP3297c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398226|gb|AAS05847.1| UvrD2 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 703

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/457 (13%), Positives = 125/457 (27%), Gaps = 72/457 (15%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
           + L+        +  + LL S F        +  I    +    DL  +++ ++   I  
Sbjct: 103 RQLRYFWPRVVGDTGWQLLDSKFAVVARAASRTRINASTDD-VRDLAGEIEWAKASLIGP 161

Query: 111 RDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            +           +         + A YE  K +   +   D            +    +
Sbjct: 162 EEYPAAVAAAGRDIPLDAARVAGVYAAYEALKARGDHVTLLDFDDLLLHTAAAIENDPAV 221

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             +        ++DE QD + +Q  V+ +   D             L  VGD  Q+IYSF
Sbjct: 222 AEEFRDRYRCFVVDEYQDVTPLQQRVLAAWLGD----------RDDLTVVGDANQTIYSF 271

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA P+ +L   R             +++ L   +RST  ++++ ++V +          
Sbjct: 272 TGASPRFLLDFSRRFP--------DATVVRLERDYRSTPQVVSLANQVIAAARGR----- 318

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                 +         G V  +                          + S     A  +
Sbjct: 319 --VAGSKLHLVGQRPPGPVPTFH-------------------------EHSDEPAEAAAV 351

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A +I+ +I + T           A +I VL R    + +             I       
Sbjct: 352 AKSIARLIESGTP----------ASEIAVLYRVNAQSEIYEEALTE----AGIPYQVRGG 397

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------NFSEDDIFKICTQRHET 463
               +   IK  +   +    +E + +    L + +         + ++      +    
Sbjct: 398 EGFFNRQEIKQALLALQRAAEREGEDAREEPLPAVVRAVLEPLGLTAEEPVGTRARERWE 457

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                                   + EL   A    P
Sbjct: 458 ALRALAELVDDEVARRPQLDFAGLLTELRMRADARHP 494



 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 59/248 (23%), Gaps = 40/248 (16%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI----AQFCSPHDFFTLILGAKKG 513
               E    Y+           + +  +  +          A+          +L     
Sbjct: 383 EALTEAGIPYQVRGGEGFFNRQEIKQALLALQRAAEREGEDAREEPLPAVVRAVLEPLGL 442

Query: 514 RQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNE 571
             +  +     E  + L                     L++EL                 
Sbjct: 443 TAEEPVGTRARERWEALRALAELVDDEVARRPQLDFAGLLTELRMRADARHPPVVQG--- 499

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + ++H AKGLE   VFLV          H                             
Sbjct: 500 VALASLHAAKGLEWDAVFLVGLADGTLPISH----------------------------- 530

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
              L         EE  RLLYVG+TRA   L +      S   + +++    +   +   
Sbjct: 531 --ALAHGADSEAVEEERRLLYVGITRARTHLALSWALARSPGGRQSRKPSRFLNGIAPQT 588

Query: 692 DERVKKIK 699
                  +
Sbjct: 589 RAEAAPAR 596


>gi|168069914|ref|XP_001786623.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660850|gb|EDQ48563.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 31/235 (13%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            R  L+  E      + L  LP      ++   +          L+  Q+L+ A   +  
Sbjct: 327 ARLALAGAEGLLEQARRLTLLPGGPGPYLDNLNA---------DLEVVQSLRDALYNRPW 377

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT------ 116
           +  F    +   ++  + +K      + ++  +L+E +KK+  +                
Sbjct: 378 DGLFERFQTVSFSKLKSCRKEETDPALQERVKELREAVKKTVQDLKGALFGRPADAFLAE 437

Query: 117 -YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD------VSAWI 169
            ++          L       Y   K++   +DF DL      +L+  D      + +  
Sbjct: 438 LHRAAPLMKELAELVIEFGDRYLHEKQRRNAVDFSDLEHYCLQILRHPDSVPGQPLPSDA 497

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             +  ++ + +L+DE QDT+ +Q ++++ ++ +          P   F VGD KQ
Sbjct: 498 AMEYQEQFDEVLLDEYQDTNSVQEDIVKLISREL---------PGNRFMVGDGKQ 543


>gi|89070230|ref|ZP_01157554.1| helicase IV [Oceanicola granulosus HTCC2516]
 gi|89044150|gb|EAR50308.1| helicase IV [Oceanicola granulosus HTCC2516]
          Length = 919

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 100/335 (29%), Gaps = 37/335 (11%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
           FG+    + +   ++L   PY    +    +    +          +T    S  +    
Sbjct: 360 FGVRKRRNRDG-EEELTTAPYVDRDEYLAGMDWKRKVHAEHDTVLVET---FSWERDEGR 415

Query: 65  RFSLLSS-------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ----DEFIKIRDR 113
               L+                    +           L     +             ++
Sbjct: 416 LLEALAKKLEPHVTLRPISDIEIYDCVAEVGAVDSFTSLMGTFLRHFMNGGYRVKDCSEK 475

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
               KM K   A L + + +   Y+        +DFED++     L++          + 
Sbjct: 476 ARRLKMGKRAEAFLKIFEAVFREYQSRLGDR--IDFEDMVNRATALVES--------GRY 525

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
                HIL+DE QD S  + +++++L    F  K        +FAVGD+ QSIY F G++
Sbjct: 526 QSPFRHILVDEFQDISTGRAKLLQALKRQHFDTK--------VFAVGDDWQSIYRFAGSD 577

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS----E 289
              +             A      ++L  +FRS   I     +           +     
Sbjct: 578 IHIMRNFGAEFGGTFAGATGVHRTVDLGRTFRSVDKIALAARRFVLRNPAQITKTVIPAG 637

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           +S       +      G   L + V +   ++   
Sbjct: 638 ESDEPSIRIAWTRRDNGEKALNDAVAALAATEGKG 672



 Score = 45.3 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 66/255 (25%), Gaps = 34/255 (13%)

Query: 424 LGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           L + +  Q  D     +    +S       D             T            + +
Sbjct: 547 LLQALKRQHFDTKVFAVGDDWQSIYRFAGSDIHIMRNFGAEFGGTFAGATGVHRTVDLGR 606

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLIL-----GAKKGRQQFISRFGNEV--IDVLDEFL 533
               +  I          +P      ++          R  +  R   E    D +    
Sbjct: 607 TFRSVDKIALAARRFVLRNPAQITKTVIPAGESDEPSIRIAWTRRDNGEKALNDAVAAL- 665

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                 +     S+  L       P   +         +   T+H++KGLE+  V ++  
Sbjct: 666 -AATEGKGGGKPSILILGRYRFLRPDVARLQRQNPGATITFKTIHSSKGLEADHVIILGA 724

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            +                        +  P     + ++S +   ++     E  R++YV
Sbjct: 725 DNAK----------------------MGFPSMIVDDPLLSLVSPEVEPYPNAEERRVMYV 762

Query: 654 GMTRASDQLIICKHS 668
            +TRA   + I    
Sbjct: 763 AVTRARRTVTILASE 777


>gi|157377373|ref|YP_001475973.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3]
 gi|157319747|gb|ABV38845.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3]
          Length = 907

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 101/274 (36%), Gaps = 39/274 (14%)

Query: 10  NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
           N++   I + +       V   + +    +E  NP+  + A+ +           +  + 
Sbjct: 506 NDAASEISRRIGSDEELYVGTFSAWCKSLLELFNPSRFEGAKVV-------TGVRQKEMF 558

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
               ++     +           S  L   +  + +  +   ++        S      L
Sbjct: 559 EQVIISSGLKEKLT---------SNQLSALISANANRLMSF-EKLLEEPELDSDCTLGEL 608

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            +     Y + K+K  ++DF+D++   ++ L   ++       +  +  ++++DE+QD++
Sbjct: 609 -EKCYELYCKEKRKQRLIDFDDMLKLVHEKL---EIDPCFLKNVVDDSKYLILDEMQDSN 664

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             QW +++ L  +             LF VGD  QSIY F GAEP  +    ++      
Sbjct: 665 ASQWAIMQVLVAN----------GCHLFCVGDPAQSIYGFRGAEPTHLDTFCQMIPN--- 711

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
                   + L  S+R T  IL + + V     +
Sbjct: 712 -----GVKVFLSHSYRLTPAILNLTNLVRQQIHS 740


>gi|254776581|ref|ZP_05218097.1| ATP-dependent DNA helicase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 703

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/458 (13%), Positives = 126/458 (27%), Gaps = 74/458 (16%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
           + L+        +  + LL S F        +  I    +    DL  +++ ++   I  
Sbjct: 103 RQLRYFWPRVVGDTGWQLLDSKFAVVARAASRTRINASTDD-VRDLAGEIEWAKASLIGP 161

Query: 111 RDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            +           +         + A YE  K +   +   D            +    +
Sbjct: 162 EEYPAAVAAAGRDIPLDAARVAGVYAAYEALKARGDHVTLLDFDDLLLHTAAAIENDPAV 221

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             +        ++DE QD + +Q  V+ +   D             L  VGD  Q+IYSF
Sbjct: 222 AEEFRDRYRCFVVDEYQDVTPLQQRVLAAWLGD----------RDDLTVVGDANQTIYSF 271

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA P+ +L   R             +++ L   +RST  ++++ ++V +          
Sbjct: 272 TGASPRFLLDFSRRFP--------DATVVRLERDYRSTPQVVSLANQVIAAARGR----- 318

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                 +         G V  +                          +       A  +
Sbjct: 319 --VAGSKLHLVGQRPPGPVPTFH-------------------------EHPDEPAEAAAV 351

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A +I+ +I + T           A +I VL R    + +       +     I       
Sbjct: 352 AKSIARLIESGTP----------ASEIAVLYRVNAQSEIYEEALTEV----GIPYQVRGG 397

Query: 410 FILTDHLAIKDLMALGRFILSQEDD-------LSFVCMLKSPLFNFSEDDIFKICTQRHE 462
               +   IK  +   +    +E +        + V  +  PL   + D+      +   
Sbjct: 398 EGFFNRQEIKQALLALQRAAEREGEGAREEPLPAVVRAVLEPL-GLTADEPVGTRARERW 456

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                                    + EL   A    P
Sbjct: 457 EALRALAELVDDEVARRPQLDFAGLLTELRMRADARHP 494



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 49/203 (24%), Gaps = 36/203 (17%)

Query: 499 SPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQ 556
                   +L          +     E  + L                     L++EL  
Sbjct: 428 PLPAVVRAVLEPLGLTADEPVGTRARERWEALRALAELVDDEVARRPQLDFAGLLTELRM 487

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                          V + ++H AKGLE   VFLV          H              
Sbjct: 488 RADARHPPVVQG---VALASLHAAKGLEWDAVFLVGLADGTLPISH-------------- 530

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                             L         EE  RLLYVG+TRA   L +      S   + 
Sbjct: 531 -----------------ALAHGADSEAVEEERRLLYVGITRARTYLALSWALARSPGGRQ 573

Query: 677 NQRTWYDMVYDSFHNDERVKKIK 699
           +++    +   +          +
Sbjct: 574 SRKPSRFLNGIAPQTRAEAAPTR 596


>gi|154332840|ref|XP_001562682.1| ATP-dependent DNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134059685|emb|CAM41806.1| putative ATP-dependent DNA helicase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 1154

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 119/370 (32%), Gaps = 104/370 (28%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY-LNAHYEEAK-KKNCVLDFEDLII 154
           +EK  ++  + +   +R  T K      +   L    L  +Y++A  +++  +DF DL  
Sbjct: 301 REKSSEAVADLVDYVNRVKTMKTPPIPQSDPGLQDAYLFPYYQKALHEEHNAVDFGDLQQ 360

Query: 155 NTNDLLKKRD--------------------------------VSAWIRYKIDQEINHILI 182
              +LL+                                   V + +   +  E  H ++
Sbjct: 361 MFYELLRPIPASALAAPQGSSGELEEQRASEGEHQPQQQGKLVPSHVCTALRAEYTHFVV 420

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD + IQ E++  L  D             +  VGD  Q IY++ GA P      K+
Sbjct: 421 DEFQDFNEIQVELLALLAGD----------ACRVTCVGDPNQCIYTWRGAMPNVFGVWKK 470

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              +         +++ L +++RS   I+   ++V    + A    E+    +   +S  
Sbjct: 471 RFPQ--------AAMLTLAMNYRSDGPIVEAANRVVKAAQLAHHHREERAVMLVQCASEE 522

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
            ++  V L                         + +       AR               
Sbjct: 523 DELQAVPL-------------------------VIEHVLRRRDAR--------------- 542

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   +   DI +L R R+   L   + +      +I V       +    +++ L+
Sbjct: 543 --------LGYGDIAILCRSRRRVQLYCDVLQS----QRIPVRQLKGMSVDHLASMRSLL 590

Query: 423 ALGRFILSQE 432
           A  R  +S  
Sbjct: 591 AFLRLCVSPH 600


>gi|269967806|ref|ZP_06181852.1| helicase IV [Vibrio alginolyticus 40B]
 gi|269827582|gb|EEZ81870.1| helicase IV [Vibrio alginolyticus 40B]
          Length = 441

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        +    ++          L        +++++   ++ + 
Sbjct: 81  WQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDSQLSHLASVGLTKKQVQEKLVNHQDYT 140

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L       +++  K++  +DF  +I    D + K         K       I+
Sbjct: 141 RLNSELALCWPCFTAWQKMLKESNQVDFPTMISRATDYVNK--------GKFVSPWRFIM 192

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  +I +L E             TLFAVGD+ Q+IY F GA+   +   K
Sbjct: 193 VDEYQDISPDRLALIEALCESTQKQAGA-----TLFAVGDDWQAIYQFAGADVDLITGFK 247

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V +       +    + +S    + +S  
Sbjct: 248 ERFAHS--------TVHHLDTTYRFNNQIGDVANTFVQQNPSQLPKTLNSHKQRKQKSVH 299

Query: 302 IGQVGTVQ 309
                 V+
Sbjct: 300 TAPSNQVE 307



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 107/384 (27%), Gaps = 58/384 (15%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +     +    ++    D L   S    L   +   +S++          +++++
Sbjct: 75  PTNFKRWQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDSQLSHLASVGLTKKQVQEKLV 134

Query: 372 QAKDILVLVRKRK-DTPLITFLTRFLKNDYKI--SVVGNDRFILTDHLAIKDLMALGRFI 428
             +D   L  +     P  T   + LK   ++    + +      +              
Sbjct: 135 NHQDYTRLNSELALCWPCFTAWQKMLKESNQVDFPTMISRATDYVNKGKFVSPWRFIMVD 194

Query: 429 LSQE---DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ--- 482
             Q+   D L+ +  L       +   +F +                       +F    
Sbjct: 195 EYQDISPDRLALIEALCESTQKQAGATLFAVGDDWQAIYQFAGADVDLITGFKERFAHST 254

Query: 483 --------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFL 533
                        I ++ +     +P      +   K+ +Q+   +   N+V  +LD   
Sbjct: 255 VHHLDTTYRFNNQIGDVANTFVQQNPSQLPKTLNSHKQRKQKSVHTAPSNQVEKILDHLN 314

Query: 534 NFTLR------NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
               +        +N Y         L ++P             +R MT H +KG E+  
Sbjct: 315 QQAKQTKSVLLLGRNHYHKPDLFDDWLRRFPNLD----------IRFMTCHASKGREADF 364

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V ++      F                           K + +I   L +   K    E 
Sbjct: 365 VIILSVDEGQFP------------------------AKKKQIHIDGALTESKDKFPYAEE 400

Query: 648 NRLLYVGMTRASDQLIICKHSNTS 671
            RL YV +TRA +++ I      S
Sbjct: 401 RRLFYVAITRAKEKVWITHTGAGS 424


>gi|255030988|ref|ZP_05302939.1| hypothetical protein LmonL_21037 [Listeria monocytogenes LO28]
          Length = 179

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 14/160 (8%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIK---IRDRFNTYKMFKSTLA----SLTLAKYLN 134
           K+   +   +++   ++  KK           R+  N     +           L K  +
Sbjct: 26  KSDYDEVYVEEAKKFRDAAKKEMKNIATDWFSREEVNCLSDLEKMKPDIQTLSELVKKFS 85

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           A++ E K++  VLDF DL      +L   D ++ +     ++   +LIDE QDT+++Q  
Sbjct: 86  ANFFEEKQQRGVLDFNDLEHLALKILLNDDKASEVAQNYQKQFKEVLIDEYQDTNMVQET 145

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++R +T               LF VGD KQSIY F  AEP
Sbjct: 146 ILRLVTNPSEA-------QGNLFMVGDVKQSIYRFRLAEP 178


>gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
 gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           3_1_44]
          Length = 862

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 136/413 (32%), Gaps = 71/413 (17%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              + ++        E+L+K Q E I+ +       ++      L       A Y+E+  
Sbjct: 145 GFYSDDLLGDYKRTIERLQKEQREAIEQQFSSFGNVLYSELNDFLNHGHEWIAAYDESLA 204

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF DLI   + L +       +R +     ++I +DE+QDT +++++V+  L E 
Sbjct: 205 SVHGLDFTDLICGVHRLFQDP----VVRERWRSRYSYISVDEMQDTGVLEYKVLEMLWE- 259

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +   GD  Q+IY + G++P    R  +          +   II    
Sbjct: 260 ----------GNHVLLCGDYFQTIYEWRGSDP---FRLLKQFDADF----KPLKIIF-YE 301

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS                        +  T+  ++ +      V      + + +S+ 
Sbjct: 302 NYRS----------------------NWTLFTMAFKTLQNMFPDLVGSIYTELPRANSES 339

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             +        +S  +        R I   I  +               +  +I VLVR 
Sbjct: 340 KGKPVLIKGCKNSYLEG-------RYIYEAICAL--------------PKDANIGVLVRD 378

Query: 383 RKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            K    ++     L  +     +   +  D F       IKD+MA  + +++  D +S  
Sbjct: 379 NKKAQQLSDSFERLNGERPEEERRHFMIIDEFKFFRRQEIKDIMAYFKLLMNPNDSVSAK 438

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETV-YEYIQKFANCGISKFQHVIKYIHE 490
            ++K  +    +  I  I +       +               +  ++  + +
Sbjct: 439 RIIKRYVAGIGDARIAAIESPETRQVGLKLTDFMDMPIFEAEPYAKLVSGLEQ 491



 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 63/224 (28%), Gaps = 39/224 (17%)

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
           N   + F  +   +  L   A    P      I+      + + S      ++ + +   
Sbjct: 672 NKYKAAFTDIASQMATLRRKAYTEMPTKLLAYIMNQMGVLEYYKSHGEAAKVEHIRDLYR 731

Query: 535 FTLRNEQ--NSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFL 590
              + +      + L  L   L+    T         N + + I+T+H AKG E   VFL
Sbjct: 732 IMEKLDAAYEGPAGLARLNQILQMAALTAGEPAQQVRNEDRIPIITIHQAKGSEFDHVFL 791

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                 +F                                        + +   +E  RL
Sbjct: 792 AGLNEGIFPSPF-----------------------------------AIAEGRGDEEKRL 816

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            YVG+TR   +L I         +     +  + +       ER
Sbjct: 817 FYVGITRPKQELTITFEQTNIRGRAVQPSSLLNYMPRDPELVER 860


>gi|322488966|emb|CBZ24215.1| putative ATP-dependent DNA helicase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 984

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 139/435 (31%), Gaps = 100/435 (22%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQ---ASQTQCIEERFSLLSSFFLTQKFTPQK 82
           F              T  PT+ ++A  L+     +       RFS L S   T     ++
Sbjct: 53  FTRQAAETLRERVRSTLPPTLTREAHALKLKTFHAFGLECLRRFSALRSD--THVLDARQ 110

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY-LNAHYEEAK 141
                     +   +EK  ++  + +   +R  T K+     +   L    L  +Y++A 
Sbjct: 111 QHELARRVVDTYAQREKSSEAVTDLVDYVNRVKTMKVPPIPQSDPALQDAYLFPYYQKAL 170

Query: 142 -KKNCVLDFEDLIINTNDLLKKRD-----------------------VSAWIRYKIDQEI 177
            +++  +DF DL     DL++                          V + +   +  E 
Sbjct: 171 HEEHNAVDFGDLQQMFYDLIRPVPATPPTASQGCGEEGLEEQQPGKMVPSDVCTALRAEY 230

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            H ++DE QD + IQ E++  L  D             +  VGD  Q IY++ GA P   
Sbjct: 231 THFVVDEFQDFNEIQVELLALLAGD----------ACRVTCVGDPNQCIYTWRGAMPNVF 280

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              K+   + A        ++ L +++RS   I+   + V    + A    E+   T+  
Sbjct: 281 GVWKKRFPQTA--------VLTLAMNYRSDGPIVEAANLVVKATQMAHHHREERAVTLVQ 332

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
            +S   ++  V L                                      +   +    
Sbjct: 333 CASEEDELQAVPL--------------------------------------VIDHVLRRR 354

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
            T           +   DI +L R R+   L   + +      +I V       +    +
Sbjct: 355 DTH----------LGYGDIAILCRSRRRVQLYCDVLQS----QRIPVRQLKGMSVDHLAS 400

Query: 418 IKDLMALGRFILSQE 432
           ++ L+A  R  +S  
Sbjct: 401 MRSLLAFLRLCVSPH 415


>gi|237807954|ref|YP_002892394.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
 gi|237500215|gb|ACQ92808.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
          Length = 1013

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 24/180 (13%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            T A LTL K +   YE+  K+   +DF D+I      L+          +     N++L
Sbjct: 554 RTQAFLTLFKPIFDAYEQHLKEQSEMDFSDMIAKATQALQD--------GRFQHHYNYVL 605

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++++L E              LFAVGD+ QSIY F+G++ +   R  
Sbjct: 606 VDEFQDLSGGRGRLLQALLES--------RPNMRLFAVGDDWQSIYRFNGSDLRFFTRFD 657

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                      +   ++ L  S+R    I  +     +           +   + + + R
Sbjct: 658 HRF--------KPAKMLPLDKSYRFNNRIHELSSMFVTRNPEQLKKQIATHVQVEYPAVR 709



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 24/95 (25%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++   T H +KGLE+  V ++      F                              + 
Sbjct: 790 DINYRTAHASKGLEADYVIILGLEKDGFPSTR------------------------ENDE 825

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           ++  L+   +     E  RLLYV +TRA   + + 
Sbjct: 826 LIDLLLPEPETYVFAEERRLLYVAITRARHYVFMV 860


>gi|59712229|ref|YP_205005.1| DNA helicase IV [Vibrio fischeri ES114]
 gi|59480330|gb|AAW86117.1| DNA helicase IV [Vibrio fischeri ES114]
          Length = 687

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 95/256 (37%), Gaps = 20/256 (7%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
           + A+     ++        +L      ++    +++ +       +L   Q +   I ++
Sbjct: 319 KNATAMNRWKKHLKKWPIAYLRGDVDLREESHNEKLQEWLYKQICQLNSLQLDKKSIVEK 378

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
              +   +   + L +       YE   K    +D+E +I      +           K 
Sbjct: 379 IEFHPDVQRLKSELNIVWPFFKAYERTLKHEDAIDYESMITKAKAYIADN--------KY 430

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
           +   + +++DE QD S  + ++I ++       +N H +  TLFAVGD+ Q+IY F GA+
Sbjct: 431 ELPWSFVMVDEYQDISPQRLDLIEAIC----HTENKHQTKATLFAVGDDWQAIYRFAGAD 486

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                  +   Q           I  L  ++R    I  V ++             +S T
Sbjct: 487 VSLTTGFEHRFQ--------STQIAHLSTTYRFNDQIGAVANRFVQENPMQLKKELNSFT 538

Query: 294 TIRHRSSRIGQVGTVQ 309
             + ++ ++ +  +++
Sbjct: 539 KKKRKAVKVIEHQSIE 554



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/368 (13%), Positives = 99/368 (26%), Gaps = 51/368 (13%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL-VRKRK 384
             ++      L +ES    L   +   I  +        +  +++    D+  L      
Sbjct: 335 PIAYLRGDVDLREESHNEKLQEWLYKQICQLNSLQLDKKSIVEKIEFHPDVQRLKSELNI 394

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG---RFILSQEDDLSFVC-- 439
             P      R LK++  I     +  I      I D          ++ +  D+S     
Sbjct: 395 VWPFFKAYERTLKHEDAIDY---ESMITKAKAYIADNKYELPWSFVMVDEYQDISPQRLD 451

Query: 440 ----MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-----------HV 484
               +  +   + ++  +F +                       +FQ             
Sbjct: 452 LIEAICHTENKHQTKATLFAVGDDWQAIYRFAGADVSLTTGFEHRFQSTQIAHLSTTYRF 511

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
              I  + +     +P      +    K +++ +    ++ I+   E L+ +        
Sbjct: 512 NDQIGAVANRFVQENPMQLKKELNSFTKKKRKAVKVIEHQSIE--KELLSLSKNIRDGEK 569

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             +       +              N +   T H +KG E+  VF+V+     F  K   
Sbjct: 570 VVILGRNHNHKPDSFDEWVKFYPGLN-LEYNTCHASKGTEADYVFIVEMTDGQFPMKERA 628

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           +      L      P                          E  RL YV +TRA  ++ I
Sbjct: 629 ESLDTALLPHAESFPY------------------------AEERRLFYVALTRAKKKVWI 664

Query: 665 CKHSNTSN 672
             H   S 
Sbjct: 665 VYHGKPSP 672


>gi|254487901|ref|ZP_05101106.1| helicase IV [Roseobacter sp. GAI101]
 gi|214044770|gb|EEB85408.1| helicase IV [Roseobacter sp. GAI101]
          Length = 943

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 97/306 (31%), Gaps = 40/306 (13%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 + +T K+ K     LT+ + +   YEE+ +    +DFED+++     ++     
Sbjct: 505 LEHCTQKADTAKLGKRAQLFLTIFRPVFEAYEESLE--GRIDFEDMVLRAAQHVES---- 558

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                +      HILIDE QD S  +  ++++L                LFAVGD+ QSI
Sbjct: 559 ----GRYKSPFGHILIDEFQDISRSRARLVKALLG--------QKHDTRLFAVGDDWQSI 606

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F G++   +                    ++L  +FRS   I     K          
Sbjct: 607 YRFAGSDIHLMRNFGAEFGGNFDGQSGVHRTVDLGRTFRSVDKIAFAARKFILKNPTQLT 666

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
            +     T    + +        +        D +   +  +  +      Q +S  +L 
Sbjct: 667 KTVIPAGTTETPAIK--------VIPTFKHDGDQKLENELLTLQTVAQESGQRASVLLLG 718

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF----LTRFLKNDYKI 402
           R                 + +K     KD+ +  +    +  +      L +  K     
Sbjct: 719 RYRHSE----------PDDFRKFRRTYKDLDITFKTIHSSKGLEADHVILLQAFKGQIGF 768

Query: 403 SVVGND 408
                D
Sbjct: 769 PSEIVD 774



 Score = 44.9 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 24/151 (15%)

Query: 519 SRFGNEVIDV-LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
              G++ ++  L         + Q +   L       E       R    + + +   T+
Sbjct: 687 KHDGDQKLENELLTLQTVAQESGQRASVLLLGRYRHSEPDDFRKFRRTYKDLD-ITFKTI 745

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H++KGLE+  V L+                            I  P     + +++ +  
Sbjct: 746 HSSKGLEADHVILLQAFKGQ----------------------IGFPSEIVDDPLLTMVSP 783

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             +     E  R++YV MTRA   L I   +
Sbjct: 784 EAEPFEHAEERRVMYVAMTRARKTLTIMGSA 814


>gi|206973603|ref|ZP_03234521.1| DNA helicase [Bacillus cereus H3081.97]
 gi|206747759|gb|EDZ59148.1| DNA helicase [Bacillus cereus H3081.97]
          Length = 631

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 66/435 (15%), Positives = 128/435 (29%), Gaps = 95/435 (21%)

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           ++  +    +H+ +DE QDT    +++I           +  +      AVGD+KQ I  
Sbjct: 209 LQKSLQLTYSHVFLDEFQDTPAHHYDLIE---------TSFKNQQVITTAVGDKKQRIML 259

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + GA      R K                  L ++ RS   ++ +           + L 
Sbjct: 260 WAGALQNVFDRFKADFS---------AEEKVLVINHRSAPKLIEL------QKPMIRELV 304

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
            +    I+H        G V+LW       +                          A  
Sbjct: 305 GEEIE-IKHSERWESGQGEVELWRFGNESEE--------------------------ATF 337

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I ++I           R I   DI +LVR  +   +         N   I V   D
Sbjct: 338 ICSKIKDLIEK---------RSIAISDICILVR--QQPEIFAKEILAYFNKNGIDVRVED 386

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            + +               +  +  +L    ++ S     +++ IF   T +        
Sbjct: 387 EYQI--------------LLKEELINLFISMIMLSQKKQAADEWIFITDTIKKIHGFSIM 432

Query: 469 YIQKFANCGISKFQHVIKYIH----ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
                      K    I+ ++    ++     F    +     +     R  +       
Sbjct: 433 TSTNKIYELEMKVSSFIEQLNKELTDIKEFKNFKVVVEHICDFINIDLIRLVYSHYTKGY 492

Query: 525 VIDVLDEFLNFT-LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           + D++++F        E+            +      +        + + IM++H +KGL
Sbjct: 493 IEDLIEKFSRLLWKEYER--------CHEWVLAIERFM------GEHSIPIMSIHKSKGL 538

Query: 584 ESPVVFLVDTGSQVF 598
           E  +V LV    + F
Sbjct: 539 EFKIVILVGLEDKAF 553


>gi|163801629|ref|ZP_02195527.1| helicase IV [Vibrio sp. AND4]
 gi|159174546|gb|EDP59348.1| helicase IV [Vibrio sp. AND4]
          Length = 689

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 108/351 (30%), Gaps = 26/351 (7%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        +    ++     +   +L        +++++  +++ + 
Sbjct: 329 WQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDNQLSQLAAVGLTKKQVQEKLVSHQDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L     + +++  K+   +DF  +I    D +KK         K       I+
Sbjct: 389 RLNSELALCWPCFSAWQKMLKETNQVDFPTMITRATDYVKK--------GKYISPWRFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  +I +L E             TLFAVGD+ Q+IY F GAE       +
Sbjct: 441 VDEYQDISPDRLALIEALCESTEKQAGA-----TLFAVGDDWQAIYQFAGAEVDLTTGFQ 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V +       +      +S    + +S  
Sbjct: 496 DRF--------IHSTVHHLDTTYRFNNQIGDVANAFVQENPSQLPKVLNSHKQRKQKSVH 547

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                 V+  + +   +      +             +     L R     I  M    +
Sbjct: 548 TAPSNQVE--KILDQLNQQAKKTKSVLLLGRNHYHKPDLYDDWLERFPKLEIRFMTCHAS 605

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                   ++ + D      K+K   +   L+    +          R   
Sbjct: 606 KGREADFVIVLSVDEGQFPAKKKQAHIDGALSE---SKDNYPYAEERRLFY 653



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/379 (13%), Positives = 107/379 (28%), Gaps = 48/379 (12%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +     +    ++    D L   S    L   +   +S +          +++++
Sbjct: 323 PTNFKRWQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDNQLSQLAAVGLTKKQVQEKLV 382

Query: 372 QAKDILVLVRKRK-DTPLITFLTRFLKNDYKISV-----VGNDRFILTDHLAIKDLMALG 425
             +D   L  +     P  +   + LK   ++          D      +++    + + 
Sbjct: 383 SHQDYTRLNSELALCWPCFSAWQKMLKETNQVDFPTMITRATDYVKKGKYISPWRFIMVD 442

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ--- 482
            +     D L+ +  L       +   +F +                       +F    
Sbjct: 443 EYQDISPDRLALIEALCESTEKQAGATLFAVGDDWQAIYQFAGAEVDLTTGFQDRFIHST 502

Query: 483 --------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ--FISRFGNEVIDVLDEF 532
                        I ++ +     +P      +L + K R+Q    +   N+V  +LD+ 
Sbjct: 503 VHHLDTTYRFNNQIGDVANAFVQENPSQLP-KVLNSHKQRKQKSVHTAPSNQVEKILDQL 561

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                     + S L    +   +              E+R MT H +KG E+  V ++ 
Sbjct: 562 NQQAK----KTKSVLLLGRNHYHKPDLYDDWLERFPKLEIRFMTCHASKGREADFVIVLS 617

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                F                           K + +I   L +        E  RL Y
Sbjct: 618 VDEGQFP------------------------AKKKQAHIDGALSESKDNYPYAEERRLFY 653

Query: 653 VGMTRASDQLIICKHSNTS 671
           V +TRA +++ I      S
Sbjct: 654 VALTRAKEKVWITHTGAGS 672


>gi|157962113|ref|YP_001502147.1| UvrD/REP helicase [Shewanella pealeana ATCC 700345]
 gi|157847113|gb|ABV87612.1| UvrD/REP helicase [Shewanella pealeana ATCC 700345]
          Length = 996

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 18/168 (10%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              A L L +++   Y++  K    LDF D+I     + + +D       +      +I+
Sbjct: 557 RWKAFLHLFRWVYDRYDKQLKLLNTLDFSDMIAEALKITQAKDFHQKTAERF--RYKYIM 614

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  + +++  L +         S    LF VGD+ Q+IY F G++     +  
Sbjct: 615 VDEFQDISPERAKLVTELRD--------SSPGCALFCVGDDWQAIYRFTGSDLGLTTQFS 666

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
                 A         + L  +FR    I  V  +             
Sbjct: 667 ETFGATA--------TVMLDKTFRFNDRIEKVASQFIQANPAQLKKRL 706



 Score = 43.4 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/326 (10%), Positives = 78/326 (23%), Gaps = 46/326 (14%)

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
             +             +   D++    K          T      ++   +  D F    
Sbjct: 566 RWVYDRYDKQLKLLNTLDFSDMIAEALKITQAKDFHQKTAE---RFRYKYIMVDEFQDIS 622

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-HETETVYEYIQKF 473
                      + +    D      +            I++        T    E     
Sbjct: 623 PERA-------KLVTELRDSSPGCALFC---VGDDWQAIYRFTGSDLGLTTQFSETFGAT 672

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-------GRQQFISRFGNEVI 526
           A   + K       I ++       +P      +                       +  
Sbjct: 673 ATVMLDKTFRFNDRIEKVASQFIQANPAQLKKRLTTHSHSENPQVCLLINNKEAAVAQAF 732

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           D + E  +   + ++ +   +    + L++     +   S    E+   + H +KG ++ 
Sbjct: 733 DSIYEVTSHIKKPKRATVMLIGRFNASLKELS---RWQKSYPQFEISGFSAHASKGKQAD 789

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V ++D                              P     + I+  L+  L      E
Sbjct: 790 FVIVLDVNDDK----------------------YGFPCKIDSDPILEVLLPKLDSYADTE 827

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSN 672
             RL YV ++RA   + +       +
Sbjct: 828 ERRLFYVALSRAKQTVFVQAELGKES 853


>gi|282849748|ref|ZP_06259132.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
 gi|282580685|gb|EFB86084.1| UvrD/REP helicase [Veillonella parvula ATCC 17745]
          Length = 862

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 135/413 (32%), Gaps = 71/413 (17%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              + ++        E+L+K Q E I+         ++      L       A Y+E+  
Sbjct: 145 GFYSDDLVGDYKRTIERLQKEQREAIEQLFSSFGNVLYSELHDFLNHGHEWIAAYDESLA 204

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF DLI   + L +       +R +     ++I +DE+QDT +++++V+  L E 
Sbjct: 205 SVHGLDFTDLICGVHRLFQDP----VVRERWRSRYSYISVDEMQDTGVLEYKVLEMLWE- 259

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +   GD  Q+IY + G++P    R  +          +   II    
Sbjct: 260 ----------GNHVLLCGDYFQTIYEWRGSDP---FRLLKQFDADF----KPLKIIF-YE 301

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS                        +  T+  ++ +      V      + + +S+ 
Sbjct: 302 NYRS----------------------NWTLFTMAFKTLQNMFPDLVGSIYTELPRANSES 339

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             +        +S  +        R I   I  +               +  +I VLVR 
Sbjct: 340 KGKPVLIKGCKNSYLEG-------RYIYEAICAL--------------PKDANIGVLVRD 378

Query: 383 RKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            K    ++     L  +     +   +  D F       IKD+MA  + +++  D +S  
Sbjct: 379 NKKAQQLSDSFERLNGERPEEERRHFMIIDEFKFFRRQEIKDVMAYFKLLMNPNDSVSAK 438

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETV-YEYIQKFANCGISKFQHVIKYIHE 490
            ++K  +    +  I  I +       +               +  ++  + +
Sbjct: 439 RIIKRYVAGIGDARIAAIESPETRQVGLKLTDFMDMPIFEAEPYAKLVSGLEQ 491



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 39/224 (17%)

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
           N   + F  +   +  L   A    P      I+      + + S      ++ + +   
Sbjct: 672 NKYKAAFTDIASQMATLRRKAYTEMPTKLLAYIMNQMGVLEYYKSHGEAAKVEHIRDLYR 731

Query: 535 FTLRNEQ--NSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFL 590
              + +      + L  L   L+    T         N + + I+T+H AKG E   VFL
Sbjct: 732 IMEKLDAAYEGPAGLARLNQILQMAALTAGEPAQQVRNEDRIPIITIHQAKGSEFDHVFL 791

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F                                        + +  ++E  RL
Sbjct: 792 AGLNEGTFPSPF-----------------------------------AISEGREDEEKRL 816

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            YV +TR   +L I         +     +  + +       ER
Sbjct: 817 FYVAITRPKQELTITFEQTNIRGRAVQPSSLLNYMPRDPELVER 860


>gi|302769962|ref|XP_002968400.1| hypothetical protein SELMODRAFT_409192 [Selaginella moellendorffii]
 gi|300164044|gb|EFJ30654.1| hypothetical protein SELMODRAFT_409192 [Selaginella moellendorffii]
          Length = 676

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 65/443 (14%), Positives = 137/443 (30%), Gaps = 114/443 (25%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +  ++   Y    +    +DF      TND+L+                    +DE QDT
Sbjct: 117 MLDWVLERYHSHLQNINAIDFNSFTRRTNDVLESFP-----------------VDEFQDT 159

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE-PKRVLREKRINQKR 247
              Q++++++L+          +    +  VGD+ Q IYS+ GA   + +          
Sbjct: 160 DTGQFKLLQALS----------TRHHHVTVVGDDDQQIYSWRGAAGIQNLESFSSTF--- 206

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++++L  +FRST  I+     V S  E+    S  +T               
Sbjct: 207 -----GGATVVKLERNFRSTGAIVAAARSVISRNESRMRKSIGTTAPTGKL--------- 252

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                             A    R +   ++ +       S+ +
Sbjct: 253 ---------------------------------VAMCECRNVLCEVAAI---SNFISSSR 276

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND--------RFILTDHLAIK 419
              ++  +I VL R  +    +    + +    K+ V G           F  T      
Sbjct: 277 AEGVKLSEIAVLYRVHRVGVELQHHLQAIGVPCKMKVTGGSDDSTVSAKGFSSTGEALA- 335

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           D++ + R IL++ DD +   ++           +F    +      V +  Q  ++  + 
Sbjct: 336 DILGVLRLILNESDDYACKRLML----------LFCPDGRSEVLSCVMQLQQAGSSSLLQ 385

Query: 480 KFQ----HVIKYIHELIHIAQFCSPHD----FFTLILGAKKGRQQFISRFGNE-----VI 526
             +    HV+    + +         +        ++   +   + ++    E     + 
Sbjct: 386 SLKTLRSHVLGMSKDSLSAPWIQPVVEKLGVLVKEVIKGAQVLMKIMADTKEELQRLGMK 445

Query: 527 DVLDEFLNFTLRN-EQNSYSSLQ 548
           DV+   L       E+   +SLQ
Sbjct: 446 DVVMNLLQQIGPYREEARTASLQ 468


>gi|254387026|ref|ZP_05002304.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
 gi|194345849|gb|EDX26815.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
          Length = 533

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 105/347 (30%), Gaps = 41/347 (11%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E  +     L      Q +  + +    +     T L  A  L+  S  +      +
Sbjct: 121 AAVELRDRAALRLGGARAPQATTFHSFCYGLVRAHQDTDL-FADPLRLLSGPEQDVMVRT 179

Query: 68  LLSSFFLTQK----FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           LL      +        +  + T+    +   +      ++   + +     +    +  
Sbjct: 180 LLEGQRRQRSIRWPDDLRAALTTRGFADEVRAVL-----ARARELGLGPHALSDFAARLG 234

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                 A    + Y +       LD+ +L+     L ++          +    + I +D
Sbjct: 235 RPDWQAAAAFLSEYLDVLDLQGTLDYAELLHRAVLLAERTPS-------LAAAYDVIYVD 287

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT   Q  ++R+LT              TL A GD  QSIY+F GA+    L  +  
Sbjct: 288 EFQDTDASQLRLLRALTG----------PGGTLVAFGDPDQSIYAFRGADINNTLDFEGA 337

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                        +  L +  RS + +L     + S     +  +            R G
Sbjct: 338 FP--------GARVRALTVGRRSASALLAATRLLTSRMPLTRLPAAAVRAHRGLTPIREG 389

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
               V  +    ++ D+  +  + +       L +      +A  + 
Sbjct: 390 GRVEVFTYPTAGAELDNIADVLRRA------HLEEGVPWQDMAVLVR 430


>gi|157159365|ref|YP_001461444.1| UvrD family helicase [Escherichia coli E24377A]
 gi|157081395|gb|ABV21103.1| helicase, UvrD family [Escherichia coli E24377A]
          Length = 1010

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 75/204 (36%), Gaps = 25/204 (12%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
                K+ Q  F  +        M   T A + L K +   YE   K+   +DF D+I  
Sbjct: 523 FLGLFKEGQFSFSDLLASPQRIDM-GRTQAFIELFKPVYDAYEAHLKEQREMDFSDMIAE 581

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               L++         +     +++L+DE QD S  + +++++L                
Sbjct: 582 ATTALQE--------GQFHHRYDYVLVDEFQDLSGGRGKLLKALL--------ATRDNMR 625

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           LFAVGD+ Q+IY F+G++ +   R                 ++ L  S+R    I  +  
Sbjct: 626 LFAVGDDWQAIYRFNGSDLRFFTRFDHQF--------SPAKMLPLDKSYRFNNRIHELSS 677

Query: 276 KVFSIPENAQGLSEDSTTTIRHRS 299
              +           + + + H +
Sbjct: 678 AFVTRNPAQLKKEITTLSQVEHAA 701



 Score = 45.7 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 84/293 (28%), Gaps = 43/293 (14%)

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG------RFILSQEDDLSFVCMLKSPL 445
             +  +  ++   V  D F        K L AL       R     +D  +      S L
Sbjct: 585 ALQEGQFHHRYDYVLVDEFQDLSGGRGKLLKALLATRDNMRLFAVGDDWQAIYRFNGSDL 644

Query: 446 FNFSEDD-------IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
             F+  D       +  +         ++E    F     ++ +  I  + ++ H A   
Sbjct: 645 RFFTRFDHQFSPAKMLPLDKSYRFNNRIHELSSAFVTRNPAQLKKEITTLSQVEHAAVQL 704

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE-LEQY 557
                    +      Q+    +  ++   L       +R      + +  +    LE  
Sbjct: 705 LDIQEQMHGIDLSDRNQRKAEAYRLQIKRALTRCHRREVRLNSTRRAPVMLIGRYRLENM 764

Query: 558 PPTIKRAHSANHNEVRIMTV-----HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                    A   E  ++ +     H +KGLE+  V L+      F              
Sbjct: 765 RELKDMDVQALMAEFPLLDIQYQTAHASKGLEANYVLLLGLEKGCFPS------------ 812

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                       +K  + ++  L+   +     E  RL YV +TRA   + + 
Sbjct: 813 ------------AKENDELIDLLLPEQEPYLFAEERRLFYVAVTRARHYVFMI 853


>gi|260890362|ref|ZP_05901625.1| putative ATP-dependent nuclease subunit A [Leptotrichia hofstadii
           F0254]
 gi|260859982|gb|EEX74482.1| putative ATP-dependent nuclease subunit A [Leptotrichia hofstadii
           F0254]
          Length = 638

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 138/392 (35%), Gaps = 75/392 (19%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF---IKIRDRFNTYKMFKST 123
           + L           +K I      K + +  ++ +  +       K+ +     K+    
Sbjct: 258 AKLELVAPKVDLFFEKKIWNGNYTKGAKNQDDREELEESSENLKEKLSEYIFVSKVLPLD 317

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL--------LKKRDVSAWIRYKIDQ 175
               T+A+ +    ++ K  +    + D+++ T +         ++   V+      I  
Sbjct: 318 KKLKTIAQIIFNIAQKIKISSKRFTYNDILVYTYEFIFNKELKFVENDKVTEEFLELIGG 377

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           +I+ I+IDE QDTS++QW++++ +           ++   +  VGDEKQSIY++ G E +
Sbjct: 378 KIDTIMIDEFQDTSILQWKILKLMM----------NTSENIICVGDEKQSIYNWRGGEKE 427

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
              + + + Q          +I  L  S+RS   I+  V+K+F+                
Sbjct: 428 LFEKLETMIQ---------GNIQTLDKSYRSYKQIIENVNKIFN---------------- 462

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
                     G    W    S +      Q+  +  +     ++        +I   I +
Sbjct: 463 ----------GYDSNWNYTDSGYREDEEYQRGYFGYFIQDTKEDK------EKIYTKIID 506

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           MI    I + GK          ++ RK      I       K    I      +  + ++
Sbjct: 507 MIKDGQIKNLGKS--------AIICRKNIHLKEIATALNEAK----IPYTLESKATILEY 554

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
             I  +  L +F    ++    +  ++S L  
Sbjct: 555 KPIVPMYQLIKFFA-FDNFKYLLEFVRSDLIG 585


>gi|149914018|ref|ZP_01902550.1| Possible DNA helicase [Roseobacter sp. AzwK-3b]
 gi|149812302|gb|EDM72133.1| Possible DNA helicase [Roseobacter sp. AzwK-3b]
          Length = 1703

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 76/594 (12%), Positives = 170/594 (28%), Gaps = 48/594 (8%)

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS----TLASLTLAKYLNAHYEEAKKKN 144
            I ++ P+    L  ++    +IR+R        +     L    LA  L       ++  
Sbjct: 1129 IKREDPNGILVLAYNRHAAAEIRERLRLLIGEDARFVTVLTIHALAMRLVGASFAGREAA 1188

Query: 145  CVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
               DFE L+ +   LL+        +  +R  + Q    IL+DE QD    ++ +I ++ 
Sbjct: 1189 DDPDFETLLTDAARLLRGDGLDKVEAEALRETLIQGFRWILVDEYQDVGPEEYALIAAVA 1248

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                   +      +LFAVGD+ Q+IY+F GA  + + + ++               + L
Sbjct: 1249 GR---SIDDPDQRISLFAVGDDDQNIYAFAGASVRHIRQFEQDYS---------AKPVFL 1296

Query: 261  PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              ++RS+ +I++  + V          +   T     +    G          V+   D+
Sbjct: 1297 TDNYRSSKNIISAANAVIEGSRERMKTAHGITVDQARQKEPAGG---------VMEDLDT 1347

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                + +       +  Q  +A     R++  I +         +   R +        V
Sbjct: 1348 VARGRVQILGCPAGNDAQALAAVNEMIRLSNLIPDWSWKRAAIISRDWRKLLP------V 1401

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R   +   I                   RFI         ++ LG    +     +    
Sbjct: 1402 RDFAEAHGIPVEMANENLPSVWRTREMQRFIGGLRKRHGAMVGLGDLTENLNAIPASRW- 1460

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
              +         + +    +              +      Q  +K +            
Sbjct: 1461 --TDRIGEGLGQLAREVDGKSLPTPDVIEWFAEWSKDSWGEQRGLKLLTAHRSKGLEFDD 1518

Query: 501  HDFFTLILGA------KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                            +   ++            L    N        +  S+       
Sbjct: 1519 VVIMDGGWERPSRNEDQDAPRRLFYVAMTRARRNLIVMSNDNHEYLPTASPSVVTRHVVP 1578

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +       R    +     +      +  +  VV      +QV +   + ++     + D
Sbjct: 1579 DLATVPGPRRFFQSPEMKMVDLSFAGRQGDRHVVHQAIGEAQVGAQVRLSRVGDRWQIED 1638

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKS----TQEEYNRLLYVGMTRASDQLII 664
              G  +          I +  +     +     +E+ +   Y  + RA+ ++++
Sbjct: 1639 VRGRALGRMSKAFAPPIGTKFVTGEIAAIIHWRKEDADERFYHLLKRANWEVVV 1692


>gi|126733715|ref|ZP_01749462.1| Possible DNA helicase [Roseobacter sp. CCS2]
 gi|126716581|gb|EBA13445.1| Possible DNA helicase [Roseobacter sp. CCS2]
          Length = 1873

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 64/391 (16%), Positives = 131/391 (33%), Gaps = 45/391 (11%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQVSDINKYV-----SLSMETGNPTILKKAQTLQQAS 57
               GL   +  E +  D +       + +++++      +  +T + +       L+ A 
Sbjct: 1045 AELGLVAMKDAEQLSGDYF--TSDNDTFLDRWMPGRSREIKRQTTSASWKAIVDVLENAV 1102

Query: 58   QTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
              + + +     +   L    + +  ++   +++ +  L+ K + +    +   +R    
Sbjct: 1103 HQKIVTDAREQTNVLVLAGPGSGKTRVL---VHRIAYLLRIKREDANGILVLTYNRHAAT 1159

Query: 118  KMFKSTLAS-------------LTLAKYLN-AHYEEAKKKNCVLDFEDLIINTNDLLK-- 161
            ++     A                LA  L    +   K ++   DF+ +I+     LK  
Sbjct: 1160 EVRARLRALVGDDVNGVTVSTCHALAMRLVGTSFAGQKSEDH--DFDGVILEAIRQLKGE 1217

Query: 162  --KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
                  +   R  + Q    IL+DE QD    ++E+I ++     V         +LFAV
Sbjct: 1218 GLSPSDAEAQRDALIQGYRWILVDEYQDIGPHEYELISAVAGRSLV---DPDLKLSLFAV 1274

Query: 220  GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GD+ Q+IY+F GA  + + +       R            L  ++RST  I+T  + V  
Sbjct: 1275 GDDDQNIYAFKGASIQYIRKFDEDYNARPA---------FLTENYRSTQAIITAANAVIR 1325

Query: 280  IPENAQGLSED-STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
              ++      D +    RH  +  G +       Q   Q             +  D L +
Sbjct: 1326 SGKDRMKAEHDITVNRGRHSEAAGGAMARHDAVAQGRVQLLDCATGDVPHAMAALDELVR 1385

Query: 339  ESSASILARRIAYTI--SNMIGTDTIFSNGK 367
             S      R     I          + S  +
Sbjct: 1386 ISKLDPDFRWDRTAIIAREWKRLGPVRSYAE 1416



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 100/342 (29%), Gaps = 57/342 (16%)

Query: 404  VVGNDRFILTDHL--AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             V   R  L D     +   MA    ++            ++ +       +  + +   
Sbjct: 1357 AVAQGRVQLLDCATGDVPHAMAALDELVRISKLDPDFRWDRTAIIAREWKRLGPVRSYAE 1416

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
            + +   E   + A   I + + +   I ++          +    IL  + G     +R+
Sbjct: 1417 KLDITVELANE-ALPSIWRLREMQTLIADMRQDPGLLLSVEDIIAILNKQPG-----NRW 1470

Query: 522  GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
             + + + +           + +  +L ++I  L        R    +   + +++ H AK
Sbjct: 1471 IDMIAEGIAAL---ARELGKGTMPAL-DVIEWLA----EWSRDTRGDQRGLLLLSAHRAK 1522

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE   V ++D G Q  S                                          
Sbjct: 1523 GLEFDHVVILDGGWQGKSDN---------------------------------------- 1542

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND-ERVKKIKL 700
               +   RL YV MTRA   L +         K          +      +   +K  +L
Sbjct: 1543 EDADAPRRLFYVAMTRAQKTLALTTTGQHLFLKPEGNSVIRRPIAADMRTELPAMKHYEL 1602

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
             ++ + D   A     +HP +  +   E   ++   Q+  + 
Sbjct: 1603 PDTASVDLSFAGRLGQNHPAHLAIAAAEVGYEIRLIQRDGRW 1644


>gi|330859640|emb|CBX69979.1| hypothetical protein YEW_GY30520 [Yersinia enterocolitica W22703]
          Length = 339

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 123/358 (34%), Gaps = 38/358 (10%)

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDT-----IFSNGKKRVIQAKDILVLVRK 382
            W    D +       ++AR+ A  I + +         + +    R +QA DI +LVR 
Sbjct: 3   FWLQSGDGVGVSEYQQLMARQCAAQIRDWLTAGQKGLAQLVTATSSRPVQASDITILVRS 62

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
           R +  L+      L      SV  ++R  + D    KDL+ L + +L+ E + +    + 
Sbjct: 63  RAEAALVRDALSTL---AIPSVYLSNRDSVFDTAEAKDLLWLLQAVLAPEQERALRSAMA 119

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           + +       + ++       + + +    +        + V+  + E++          
Sbjct: 120 TGILGLDARMLDELNHDERAWDALVDEFDGYRQHWQR--RGVLPMLREIMAQRH------ 171

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT---LRNEQNSYSSLQELISELEQYPP 559
               +L  + G ++            L E L      L +E      L + I++      
Sbjct: 172 LAENLLATQGGERRLTDLL------HLGELLQEAASQLDSEHALIRWLAQQIAQPNHQSD 225

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             +    ++ + V+++T+H +KGLE P+V+L    +       +                
Sbjct: 226 NQQLRLESDRHLVQVITIHKSKGLEYPLVWLPFVSNFRQQQDVLYHDRHSFEAL------ 279

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                     N   +     ++    E  RLLYV +TRA     I         +K+ 
Sbjct: 280 -------LDLNADEESQALAEEERLAEDLRLLYVALTRAVYHCSIGIAPLIKGGEKNR 330


>gi|197335191|ref|YP_002156443.1| helicase IV [Vibrio fischeri MJ11]
 gi|197316681|gb|ACH66128.1| helicase IV [Vibrio fischeri MJ11]
          Length = 687

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 95/256 (37%), Gaps = 20/256 (7%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
           + A+     ++        +L      ++    +++ +       +L   Q +   I ++
Sbjct: 319 KNATAMNRWKKHLKKWPIAYLRGDVDLREESHNEKLQEWLYKQICQLNSLQLDKKSIVEK 378

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
              +   +   + L +       YE   K    +D+E +I      +           K 
Sbjct: 379 IEFHPDVQRLKSELNIVWPFFKAYERTLKHEDAIDYESMITKAKAYIADN--------KY 430

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
           +   + +++DE QD S  + ++I ++       +N H +  TLFAVGD+ Q+IY F GA+
Sbjct: 431 ELPWSFVMVDEYQDISPQRLDLIEAIC----HTENKHQTKATLFAVGDDWQAIYRFAGAD 486

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                  +   Q           I  L  ++R    I  V ++             +S T
Sbjct: 487 VSLTTGFENRFQ--------STQIAHLSTTYRFNDQIGAVANRFVQENPMQLKKELNSFT 538

Query: 294 TIRHRSSRIGQVGTVQ 309
             + ++ ++ +  +++
Sbjct: 539 KKKRKAVKVIEHQSIE 554



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 104/368 (28%), Gaps = 51/368 (13%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL-VRKRK 384
             ++      L +ES    L   +   I  +        +  +++    D+  L      
Sbjct: 335 PIAYLRGDVDLREESHNEKLQEWLYKQICQLNSLQLDKKSIVEKIEFHPDVQRLKSELNI 394

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG---RFILSQEDDLSFVC-- 439
             P      R LK++  I     +  I      I D          ++ +  D+S     
Sbjct: 395 VWPFFKAYERTLKHEDAIDY---ESMITKAKAYIADNKYELPWSFVMVDEYQDISPQRLD 451

Query: 440 ----MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-----------HV 484
               +  +   + ++  +F +                      ++FQ             
Sbjct: 452 LIEAICHTENKHQTKATLFAVGDDWQAIYRFAGADVSLTTGFENRFQSTQIAHLSTTYRF 511

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
              I  + +     +P      +    K +++ +    ++ I+   E L+ +        
Sbjct: 512 NDQIGAVANRFVQENPMQLKKELNSFTKKKRKAVKVIEHQSIE--KELLSLSKNIRDGEK 569

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             +       +              N +   T H +KG E+  VF+V+     F      
Sbjct: 570 VVILGRNHNHKPDSFDEWVKFYPGLN-LEYNTCHASKGTEADYVFIVEMTDGQFPM---- 624

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                +   ++ + L+ H +     E  RL YV +TRA  ++ I
Sbjct: 625 --------------------KERAESLDAALLPHAESFPYAEERRLFYVALTRAKKKVWI 664

Query: 665 CKHSNTSN 672
             H   S 
Sbjct: 665 VYHGKPSP 672


>gi|269798688|ref|YP_003312588.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
 gi|269095317|gb|ACZ25308.1| UvrD/REP helicase [Veillonella parvula DSM 2008]
          Length = 862

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 136/413 (32%), Gaps = 71/413 (17%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              + ++        E+L+K Q E I+ +       ++      L       A Y+E+  
Sbjct: 145 EFYSDDLVGDYKRTIERLQKEQREAIEQQFSSFGNVLYSELNDFLNHGHEWIAAYDESLA 204

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF DLI   + L +       +R +     ++I +DE+QDT +++++V+  L E 
Sbjct: 205 SLHGLDFTDLICGVHRLFQDP----VVRERWRSRYSYISVDEMQDTGVLEYKVLEMLWE- 259

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +   GD  Q+IY + G++P    R  +          +   II    
Sbjct: 260 ----------GNHVLLCGDYFQTIYEWRGSDP---FRLLKQFDADF----KPLKIIF-YE 301

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS                        +  T+  ++ +      V      + + +S+ 
Sbjct: 302 NYRS----------------------NWTLFTMAFKALQNMFPDLVGSIYTELPRANSES 339

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             +        +S  +        R I   I  +               +  +I VLVR 
Sbjct: 340 KGKPVLIKGCKNSYLEG-------RYIYEAICAL--------------PKDANIGVLVRD 378

Query: 383 RKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            K    ++     L  +     +   +  D F       IKD+MA  + +++  D +S  
Sbjct: 379 NKKAQQLSDSFERLNGERSEEERRHFMIIDEFKFFRRQEIKDVMAYFKLLMNPNDSVSAK 438

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETV-YEYIQKFANCGISKFQHVIKYIHE 490
            ++K  +    +  I  I +       +               +  ++  + +
Sbjct: 439 RIIKRYVAGIGDARIAAIESPETRQVGLKLTDFMDMPIFEAEPYAKLVSGLEQ 491



 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 62/224 (27%), Gaps = 39/224 (17%)

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
           N   + F ++   +  L   A    P      I+      + + S      ++ + +   
Sbjct: 672 NKYKAAFTNIASQMATLRRKAYTEMPTKLLAYIMNQMGVLEYYKSHGEAAKVEHIRDLYR 731

Query: 535 FTLRNEQ--NSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFL 590
              + +      + L  L   L+    T         N + + I+T+H AKG E   VFL
Sbjct: 732 IMEKLDAAYEGPAGLARLNQILQLAALTAGEPAQQVRNEDRIPIITIHQAKGSEFDYVFL 791

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F                                        L +   +E  RL
Sbjct: 792 AGLNEGTFPSPF-----------------------------------ALAEGRDDEEKRL 816

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            YV +TR   +L I         +     +  + +       ER
Sbjct: 817 FYVAITRPKQELTITFEQTNIRGRAVQPSSLLNYMPRDPELVER 860


>gi|163784551|ref|ZP_02179406.1| First subunit of major exonuclease [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880179|gb|EDP73828.1| First subunit of major exonuclease [Hydrogenivirga sp. 128-5-R1-1]
          Length = 423

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 80/201 (39%), Gaps = 26/201 (12%)

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
             +K    + I   S D  ++    Q+  I    +     +  +    L       +  E
Sbjct: 249 EEEKIFYKKNIKPLSKD--KEFLNFQENIINTLYKLKIRLLDYNANLLLNKIWQFISFVE 306

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
             KK+  ++DF+D++  T +++K +     I+ +I     +I IDE QDT  IQ ++I+ 
Sbjct: 307 NIKKEEKIIDFDDILEKTLEMIKSKPS---IKEQIKNSFKYIFIDEFQDTDNIQTQIIKE 363

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           ++               ++  GD KQ IY++  A+                     FS  
Sbjct: 364 IS------------NNNIYLFGDPKQCIYTWRNADLNVYFDFLNE---------NTFSNE 402

Query: 259 ELPLSFRSTADILTVVDKVFS 279
            +  ++RS  +++   +K+ S
Sbjct: 403 VIDTNYRSEPELVEFFNKMLS 423


>gi|269961143|ref|ZP_06175511.1| helicase IV [Vibrio harveyi 1DA3]
 gi|269834094|gb|EEZ88185.1| helicase IV [Vibrio harveyi 1DA3]
          Length = 689

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 102/326 (31%), Gaps = 23/326 (7%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        +    ++     +   +L        +++++   ++ + 
Sbjct: 329 WQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDNQLSQLAAVGLTKKQVQEKLVNHQDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L     + +++  K+   +DF  +I    D + K         K       I+
Sbjct: 389 RLNSELALCWPCFSAWQKMLKETNQVDFPTMISRATDYVTK--------GKFISPWRFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  +I +L            +  TLFAVGD+ Q+IY F GA+       +
Sbjct: 441 VDEYQDISPDRLALIEALCA-----STEKQTGATLFAVGDDWQAIYQFAGADVDLTTGFQ 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V +       +    + +S    + +S  
Sbjct: 496 ERF--------THSTVHHLDTTYRFNNQIGDVANTFVQENPSQLPKTLNSHKQRKQKSVH 547

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                 V+  + +   +      +             +     L R     I  M    +
Sbjct: 548 TAPSNQVE--KILDQLNQQAKKTKSVLLLGRNHYHKPDLYDDWLKRFPNLEIRFMTCHAS 605

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTP 387
                   +I + D      K+K   
Sbjct: 606 KGREADFVIILSVDEGQFPAKKKQAH 631



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 108/378 (28%), Gaps = 46/378 (12%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +     +    ++    D L   S    L   +   +S +          +++++
Sbjct: 323 PTNFKRWQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDNQLSQLAAVGLTKKQVQEKLV 382

Query: 372 QAKDILVLVRKRK-DTPLITFLTRFLKNDYKISV-----VGNDRFILTDHLAIKDLMALG 425
             +D   L  +     P  +   + LK   ++          D       ++    + + 
Sbjct: 383 NHQDYTRLNSELALCWPCFSAWQKMLKETNQVDFPTMISRATDYVTKGKFISPWRFIMVD 442

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ--- 482
            +     D L+ +  L +     +   +F +                       +F    
Sbjct: 443 EYQDISPDRLALIEALCASTEKQTGATLFAVGDDWQAIYQFAGADVDLTTGFQERFTHST 502

Query: 483 --------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFL 533
                        I ++ +     +P      +   K+ +Q+   +   N+V  +LD+  
Sbjct: 503 VHHLDTTYRFNNQIGDVANTFVQENPSQLPKTLNSHKQRKQKSVHTAPSNQVEKILDQLN 562

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                    + S L    +   +            + E+R MT H +KG E+  V ++  
Sbjct: 563 QQAK----KTKSVLLLGRNHYHKPDLYDDWLKRFPNLEIRFMTCHASKGREADFVIILSV 618

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               F                           K + +I   L +   K    E  RL YV
Sbjct: 619 DEGQFP------------------------AKKKQAHIDGALSESKDKFPYAEERRLFYV 654

Query: 654 GMTRASDQLIICKHSNTS 671
            +TRA +++ I      S
Sbjct: 655 ALTRAKEKVWITHTGAGS 672


>gi|94987148|ref|YP_595081.1| hypothetical protein LI0706 [Lawsonia intracellularis PHE/MN1-00]
 gi|94731397|emb|CAJ54760.1| uncharacterized conserved protein [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 1102

 Score =  111 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/435 (13%), Positives = 131/435 (30%), Gaps = 76/435 (17%)

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
                + +  +   +  P L   +KK+ +    +R++     +             +   
Sbjct: 618 SEEASQAVFIKANEENEPKL---IKKAWEILNLVREKQVDTSVLPEQAYL-----PMLEK 669

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y + KK   ++D+ DL+      L+K   + W           +L+DE+QD S +Q  ++
Sbjct: 670 YRQYKKIRNMVDYSDLLEQWISTLQKSRGTFW---------KAVLVDEIQDLSSLQLALV 720

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L           SS +  F +GD  QSIY F GA P   L   ++             
Sbjct: 721 KLLV---------PSSGKGFFGIGDPDQSIYGFRGAHPNVQLALSKMWP--------GIK 763

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           +I L  ++RS  +++     + +  + ++ L+                            
Sbjct: 764 VITLAENYRSVKEVVYSASALLASGKQSKNLTS--------------------------- 796

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI-QAKD 375
               +       +T+          AS +++ I  +   ++             +    D
Sbjct: 797 --TRKDKGLLHLFTAPDYCREASWVASKVSQLIGGSSHTLVDARAGNEPHPLAGLCSPGD 854

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG-RFILSQE-- 432
           I +LVR +            L     +     +  +  +   +  L+ L  R        
Sbjct: 855 IAILVRMKALMKPFQESLVRL----GVPCSVPETELFWEDQRVALLLGLAGRKFGRPFGI 910

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
             +     + + ++N     +          + ++       +    K     K      
Sbjct: 911 QTVPDPSSIATHIWNGGPSALLSWLESVPPFDPLF-----RESSSFKKLLKAYKVHGSWE 965

Query: 493 HIAQFCSPHDFFTLI 507
            +  +        L+
Sbjct: 966 SLLNWLCLRQEIDLV 980



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 26/126 (20%)

Query: 546  SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            S + L++ L            ++  +V+IMT+H +KGLE  V+FL      +  +   ++
Sbjct: 963  SWESLLNWLCLRQEIDLVK--SHSEQVQIMTLHASKGLEFKVIFLPALEEGLLPYLGTQR 1020

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
            +                        +     ++    T  E  RLLYVGMTRA D L + 
Sbjct: 1021 L------------------------LQKAEKEYENSETIAEEKRLLYVGMTRAKDALFLS 1056

Query: 666  KHSNTS 671
                 +
Sbjct: 1057 YSEQRT 1062


>gi|183602366|ref|ZP_02963732.1| probable DNA helicase II [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|241191280|ref|YP_002968674.1| DNA helicase II [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196686|ref|YP_002970241.1| DNA helicase II [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218285|gb|EDT88930.1| probable DNA helicase II [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|240249672|gb|ACS46612.1| DNA helicase II [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251240|gb|ACS48179.1| DNA helicase II [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|295794273|gb|ADG33808.1| DNA helicase II [Bifidobacterium animalis subsp. lactis V9]
          Length = 529

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 86/276 (31%), Gaps = 68/276 (24%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE  K     +DF D+++    +L   D    +  +I ++I  + +DE QD S 
Sbjct: 207 ATVYEQYEAEKNSRFEIDFNDILLLACHVL---DAFPDVAKRIRRQIGWLTVDEYQDVSP 263

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++               S R +  VGD  Q+IYSF GA    +    +       +
Sbjct: 264 LQHLLMTRWLG----------SNRNICVVGDPAQTIYSFAGATSYYLEHFGKEFAPLTAD 313

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L   +RS + I+   ++V        G S      IR  S R G    V  
Sbjct: 314 -------IALNRDYRSVSPIVGYANRV-------LGGSAQRQDYIRLESGR-GTGSRV-- 356

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                         + +  A+ +A  IS ++             
Sbjct: 357 ------------------------MSRIYETDAAEAQAVARQISRILAQGG--------- 383

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             A D  VL R      L+    +       I    
Sbjct: 384 -NASDCAVLTRVGGQQTLVAQALK----QANIPYRL 414



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 102/378 (26%), Gaps = 51/378 (13%)

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           ++       ++  +        +          + D L            +A  I   IG
Sbjct: 192 ATHRTPPAGLEPGQFATVYEQYEAEKNSRFEIDFNDILLLACHVLDAFPDVAKRIRRQIG 251

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T+        +Q   +   +   ++  ++             S  G   + L      
Sbjct: 252 WLTVDEYQDVSPLQHLLMTRWLGSNRNICVVGDP-----AQTIYSFAGATSYYL--EHFG 304

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY-IQKFANCG 477
           K+   L   I    D  S   ++             +   +           + +     
Sbjct: 305 KEFAPLTADIALNRDYRSVSPIVGYANRVLGGSAQRQDYIRLESGRGTGSRVMSRIYETD 364

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            ++ Q V + I  ++      S       +L    G+Q  +++   +    +   L   +
Sbjct: 365 AAEAQAVARQISRILAQGGNASDCA----VLTRVGGQQTLVAQALKQA--NIPYRLRRNM 418

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             + ++ +       E  +               V I T+H AKGLE   VF++     +
Sbjct: 419 NWQSSALAGTAR--QETAETSNAGVEQLGVEKGRVTISTIHAAKGLEYKHVFVIGLSEGL 476

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             +K       +                                   EE  R+LYV +TR
Sbjct: 477 LPYKPQSDDGDV-----------------------------------EEERRVLYVALTR 501

Query: 658 ASDQLIICKHSNTSNEKK 675
           A D L +     + ++  
Sbjct: 502 AEDTLHLSFAKRSDSQTT 519


>gi|91227913|ref|ZP_01262052.1| helicase IV [Vibrio alginolyticus 12G01]
 gi|91188322|gb|EAS74619.1| helicase IV [Vibrio alginolyticus 12G01]
          Length = 689

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        +    ++          L        +++++   ++ + 
Sbjct: 329 WQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDSQLSHLAAVGLTKKQVQEKLVNHQDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L       +++  K++  +DF  +I    D + K         K       I+
Sbjct: 389 RLNSELALCWPCFTAWQKMLKESNQVDFPTMISRATDYVNK--------GKFVSPWRFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  +I +L E             TLFAVGD+ Q+IY F GA+   +   K
Sbjct: 441 VDEYQDISPDRLALIEALCESTQKQAGA-----TLFAVGDDWQAIYQFAGADVDLITGFK 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V +       +    + +S    + +S  
Sbjct: 496 ERFAHS--------TVHHLDTTYRFNNQIGDVANTFVQQNPSQLPKTLNSHKQRKQKSVH 547

Query: 302 IGQVGTVQ 309
                 V+
Sbjct: 548 TAPSNQVE 555



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 107/384 (27%), Gaps = 58/384 (15%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +     +    ++    D L   S    L   +   +S++          +++++
Sbjct: 323 PTNFKRWQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDSQLSHLAAVGLTKKQVQEKLV 382

Query: 372 QAKDILVLVRKRK-DTPLITFLTRFLKNDYKI--SVVGNDRFILTDHLAIKDLMALGRFI 428
             +D   L  +     P  T   + LK   ++    + +      +              
Sbjct: 383 NHQDYTRLNSELALCWPCFTAWQKMLKESNQVDFPTMISRATDYVNKGKFVSPWRFIMVD 442

Query: 429 LSQE---DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ--- 482
             Q+   D L+ +  L       +   +F +                       +F    
Sbjct: 443 EYQDISPDRLALIEALCESTQKQAGATLFAVGDDWQAIYQFAGADVDLITGFKERFAHST 502

Query: 483 --------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFL 533
                        I ++ +     +P      +   K+ +Q+   +   N+V  +LD   
Sbjct: 503 VHHLDTTYRFNNQIGDVANTFVQQNPSQLPKTLNSHKQRKQKSVHTAPSNQVEKILDHLN 562

Query: 534 NFTLR------NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
               +        +N Y         L ++P             +R MT H +KG E+  
Sbjct: 563 QQAKQTKSVLLLGRNHYHKPDLFDDWLRRFPNLD----------IRFMTCHASKGREADF 612

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V ++      F                           K + +I   L +   K    E 
Sbjct: 613 VIILSVDEGQFP------------------------AKKKQIHIDGALTESKDKFPYAEE 648

Query: 648 NRLLYVGMTRASDQLIICKHSNTS 671
            RL YV +TRA +++ I      S
Sbjct: 649 RRLFYVAITRAKEKVWITHTGAGS 672


>gi|168205259|ref|ZP_02631264.1| putative UvrD/REP helicase [Clostridium perfringens E str. JGS1987]
 gi|170663217|gb|EDT15900.1| putative UvrD/REP helicase [Clostridium perfringens E str. JGS1987]
          Length = 570

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 73/566 (12%), Positives = 167/566 (29%), Gaps = 144/566 (25%)

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y        ++D + L+      +K+  +   +   I Q+I ++  DE QD + +Q+++
Sbjct: 149 EYIFRLNYLNLMDIDILLPLFLKKIKEDSI---LLDNIRQDIEYLFYDEAQDMNNLQYQI 205

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + ++            S +    +GD+ Q++Y ++  + K +L                 
Sbjct: 206 LTTII--------PPESDKGFALIGDDDQNLYQWNNTDVKYILDFPEKYG---------A 248

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +  L  ++R +  I+   + + S        S                     L     
Sbjct: 249 EVFILDENYRCSNQIIKASNALISKNTKRFNKSVSGFFDK-------------DLLNLCS 295

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
            + + +                               I  ++G    + + K++ +    
Sbjct: 296 FETEQE------------------------------EIIRLVGLAFSYKHNKEKTL---- 321

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L R  K+   I  + + +  D   S+  N      +           + +++  +D 
Sbjct: 322 -AILCRTNKEIERINKVFKSMNIDSNTSIKENLNSSNIE---------FLKLVVNPAND- 370

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
               +L   +   S+++  K      E ++ +E + +  N    K             + 
Sbjct: 371 ----LLVEKVIGISKENKIK---ALEEEKSFFEILLEEKNGLALKVSMFNCMARTQRAMQ 423

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
            + +        +   +                      +T + + +  +SL + ++ +E
Sbjct: 424 IYNTISSNLN--IEDTQLENAIKC---------------WTSKLKSSKANSLNDFLNYIE 466

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                         + + I T+H AKGLE   V L +     FS +              
Sbjct: 467 TKDAQEN--LKEGTSNINITTIHGAKGLEFDEVVLFNFDDFNFSSQG------------- 511

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                        EE  RLLYV  TRA ++L +        ++K
Sbjct: 512 ---------------------------DVEETRRLLYVAFTRAKEKLNLYFSKQNFYKQK 544

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLT 701
               T    + +   N    +     
Sbjct: 545 ECSCTVSPFLKELPGNYVWFEDYFKE 570


>gi|209695575|ref|YP_002263504.1| DNA helicase IV [Aliivibrio salmonicida LFI1238]
 gi|208009527|emb|CAQ79819.1| helicase IV [Aliivibrio salmonicida LFI1238]
          Length = 687

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 95/256 (37%), Gaps = 20/256 (7%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
           + A+ T   ++        +L      ++    +++ +       +L   Q +   +  R
Sbjct: 319 KNATATNRWKKHLKKWPIAYLRGDVDLKEESHNEKLQEWLHKQVCQLNSLQLDKKTVTAR 378

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
              +       + L +       YE   K+   +D++ +I      + +         K 
Sbjct: 379 IENHADAARLKSELNIVWPFFKAYERTLKQEDAIDYDLMITKATAYINE--------GKY 430

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
               + +++DE QD S  + ++I ++       +N      TLFAVGD+ Q+IY F GA+
Sbjct: 431 ALPWSFVMVDEYQDISPQRLDLIEAICHK----ENDKKERATLFAVGDDWQAIYRFAGAD 486

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                  ++  Q           I  L +++R    I  V ++             +S T
Sbjct: 487 VSLTTGFEQRFQ--------SCQIANLSMTYRFNDQIGAVANRFVQENPMQLKKELNSFT 538

Query: 294 TIRHRSSRIGQVGTVQ 309
             + ++ ++ +  +++
Sbjct: 539 KQKRKAVKVIEHQSIE 554



 Score = 51.5 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 101/367 (27%), Gaps = 49/367 (13%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL-VRKRK 384
             ++      L +ES    L   +   +  +            R+    D   L      
Sbjct: 335 PIAYLRGDVDLKEESHNEKLQEWLHKQVCQLNSLQLDKKTVTARIENHADAARLKSELNI 394

Query: 385 DTPLITFLTRFLKNDYKI----------SVVGNDRFILTDHLAIKDLMA--------LGR 426
             P      R LK +  I          + +   ++ L     + D           L  
Sbjct: 395 VWPFFKAYERTLKQEDAIDYDLMITKATAYINEGKYALPWSFVMVDEYQDISPQRLDLIE 454

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-HVI 485
            I  +E+D      L           I++         T +E   +              
Sbjct: 455 AICHKENDKKERATLF--AVGDDWQAIYRFAGADVSLTTGFEQRFQSCQIANLSMTYRFN 512

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             I  + +     +P      +    K +++ +    ++ I+   E L+ +    ++   
Sbjct: 513 DQIGAVANRFVQENPMQLKKELNSFTKQKRKAVKVIEHQSIE--KELLSLSKNI-RDGEK 569

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            L    +         +         +   T H +KG E+  VF+V+     F       
Sbjct: 570 VLMLGRNYNHCPDAFDEWVKFYPGLNLEYKTCHASKGTEADYVFIVEMTDGQFPM----- 624

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                               +   ++   L+ HL+     E  RL YV +TRA  ++ I 
Sbjct: 625 -------------------KERAESLDGALLPHLEDFAYAEERRLFYVALTRAKKKVWIV 665

Query: 666 KHSNTSN 672
            H   S 
Sbjct: 666 YHGKASP 672


>gi|254229814|ref|ZP_04923220.1| helicase IV [Vibrio sp. Ex25]
 gi|262395620|ref|YP_003287473.1| DNA helicase IV [Vibrio sp. Ex25]
 gi|151937650|gb|EDN56502.1| helicase IV [Vibrio sp. Ex25]
 gi|262339214|gb|ACY53008.1| DNA helicase IV [Vibrio sp. Ex25]
          Length = 689

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 84/248 (33%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        +    ++          L        +++++   ++ + 
Sbjct: 329 WQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDSQLSHLAAVGLTKKQVQEKLVNHQDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L       +++  K++  +DF  +I    D + K         K       I+
Sbjct: 389 RLNSELALCWPCFTAWQKMLKESNQVDFPTMISRATDYVNK--------GKFVSPWRFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  +I +L E             TLFAVGD+ Q+IY F GA+   +   K
Sbjct: 441 VDEYQDISPDRLALIEALCESTQKQAGA-----TLFAVGDDWQAIYQFAGADVDLITGFK 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V +       +    + +S    + +S  
Sbjct: 496 ERFAHS--------TVHHLDTTYRFNNQIGDVANTFVQQNPSQLPKTLNSHKQRKQKSVH 547

Query: 302 IGQVGTVQ 309
                 V+
Sbjct: 548 TAPSNQVE 555



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/378 (13%), Positives = 105/378 (27%), Gaps = 46/378 (12%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +     +    ++    D L   S    L   +   +S++          +++++
Sbjct: 323 PTNFKRWQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDSQLSHLAAVGLTKKQVQEKLV 382

Query: 372 QAKDILVLVRKRK-DTPLITFLTRFLKNDYKI--SVVGNDRFILTDHLAIKDLMALGRFI 428
             +D   L  +     P  T   + LK   ++    + +      +              
Sbjct: 383 NHQDYTRLNSELALCWPCFTAWQKMLKESNQVDFPTMISRATDYVNKGKFVSPWRFIMVD 442

Query: 429 LSQE---DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ--- 482
             Q+   D L+ +  L       +   +F +                       +F    
Sbjct: 443 EYQDISPDRLALIEALCESTQKQAGATLFAVGDDWQAIYQFAGADVDLITGFKERFAHST 502

Query: 483 --------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFL 533
                        I ++ +     +P      +   K+ +Q+   +   N+V  +LD+  
Sbjct: 503 VHHLDTTYRFNNQIGDVANTFVQQNPSQLPKTLNSHKQRKQKSVHTAPSNQVEKILDQLN 562

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                  Q     L       +            N + +R MT H +KG E+  V ++  
Sbjct: 563 QQAK---QTKSVLLLGRNHYHKPDLYDDWLRRFPNLD-IRFMTCHASKGREADFVIILSV 618

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               F                           K + +I   L +   K    E  RL YV
Sbjct: 619 DEGQFP------------------------AKKKQIHIDGALTESKDKFPHAEERRLFYV 654

Query: 654 GMTRASDQLIICKHSNTS 671
            +TRA +++ I      S
Sbjct: 655 AITRAKEKVWITHTGAGS 672


>gi|241759897|ref|ZP_04757997.1| exodeoxyribonuclease V, beta subunit [Neisseria flavescens SK114]
 gi|241319905|gb|EER56301.1| exodeoxyribonuclease V, beta subunit [Neisseria flavescens SK114]
          Length = 561

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 21/193 (10%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           + +  +P++ +   ++     +      + +        L L  Y+N    E KK     
Sbjct: 320 KADADAPEIIQ--LQALANLGRDLQAMESAEEAVFICLQLDLLSYINQSIAEQKKSRRER 377

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            F+DL+++ +  L   +    +           LIDE QDT  +Q+E+ R +  +     
Sbjct: 378 VFDDLLLDVHQALTTNEHGNALAKVAAANWEIALIDEFQDTDPLQYEIFRQIFIE----- 432

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   LF VGD KQ+IYSF GA+    L+  +                 L +++RS 
Sbjct: 433 ----QGCPLFLVGDPKQAIYSFRGADIYAYLQAAQD----------ADRHYTLAVNYRSH 478

Query: 268 ADILTVVDKVFSI 280
           A ++  +  +F  
Sbjct: 479 AKLINGISALFKQ 491


>gi|294792636|ref|ZP_06757783.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
 gi|294456535|gb|EFG24898.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp.
           6_1_27]
          Length = 862

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 136/413 (32%), Gaps = 71/413 (17%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              + ++        E+L+K Q E I+ +       ++      L       A Y+E+  
Sbjct: 145 GFYSDDLLGDYKRTIERLQKEQREAIEQQFSSFGNVLYSELHDFLNHGHEWIAAYDESLA 204

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF DLI   + L +       +R +     ++I +DE+QDT +++++V+  L E 
Sbjct: 205 SVHGLDFTDLICGVHRLFQDP----VVRERWRSRYSYISVDEMQDTGVLEYKVLEMLWE- 259

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +   GD  Q+IY + G++P    R  +          +   II    
Sbjct: 260 ----------GNHVLLCGDYFQTIYEWRGSDP---FRLLKQFDADF----KPLKIIF-YE 301

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS                        +  T+  ++ +      V      + + +S+ 
Sbjct: 302 NYRS----------------------NWTLFTMAFKTLQNMFPDLVGSIYTELPRANSES 339

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             +        +S  +        R I   I  +               +  +I VLVR 
Sbjct: 340 KGKPVLIKGCKNSYLEG-------RYIYEAICAL--------------PKDANIGVLVRD 378

Query: 383 RKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            K    ++     L  +     +   +  D F       IKD+MA  + +++  D +S  
Sbjct: 379 NKKAQQLSDSFERLNGERPEEERRHFMIIDEFKFFRRQEIKDVMAYFKLLMNPNDSVSAK 438

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETV-YEYIQKFANCGISKFQHVIKYIHE 490
            ++K  +    +  I  I +       +               +  ++  + +
Sbjct: 439 RIIKRYVAGIGDARIAAIESPETRQIGLKLTDFMDMPIFEAEPYAKLVSGLEQ 491



 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 64/224 (28%), Gaps = 39/224 (17%)

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
           N   + F  +   +  L   A    P      I+      + + S      ++ + +   
Sbjct: 672 NKYKAAFTDIASQMATLRRKAYTEMPTKLLAYIMNQMGVLEYYKSHGEAAKVEHIRDLYR 731

Query: 535 FTLRNEQ--NSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFL 590
              + +      + L  L   L+    T         N + + I+T+H AKG E   VFL
Sbjct: 732 IMEKLDAAYEGSAGLARLNQILQMAALTAGEPAQQVRNEDRIPIITIHQAKGSEFDHVFL 791

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F                                     +  + +  ++E  RL
Sbjct: 792 AGLNEGTFPS-----------------------------------LFAIAEGREDEEKRL 816

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            YVG+TR   +L I         +     +  + +       ER
Sbjct: 817 FYVGITRPKRELTITFEQTNIRGRAVQPSSLLNYMPRDSELVER 860


>gi|255019436|ref|ZP_05291543.1| UvrD/REP helicase [Acidithiobacillus caldus ATCC 51756]
 gi|254971134|gb|EET28589.1| UvrD/REP helicase [Acidithiobacillus caldus ATCC 51756]
          Length = 679

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 92/686 (13%), Positives = 181/686 (26%), Gaps = 139/686 (20%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
                   + ++        V +++      +       L   + L         E+ + 
Sbjct: 61  DFGAQLTALLRESGCDTPPLVVNLHALAYRLLRGLVRQGLAPPRKLVD----DSQEDFWR 116

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L +  L++        I             + K  +    +    +   +  +      
Sbjct: 117 GLVALSLSRADGIAPGEIPPSEIDHYHLWIVQTKARRASPDRADLAWCEAQGIEDPAHFY 176

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                + A +EE + +   + F+DLI +  DL  +      +  +I    + +++DE QD
Sbjct: 177 R----VFAAFEEERLQAGAMGFDDLIGDLLDLALRDGA---VYDQISDHYDLVVVDEFQD 229

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            +    ++IR L  D             + A+GD+ QSIY F GA+P  ++R        
Sbjct: 230 MTRANLDLIRVLAGDRAS----------VVAIGDDDQSIYGFRGADPGLMVR-------E 272

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 +F+   L  +FR    +  +  ++ +  +                 +R      
Sbjct: 273 FGIFFPRFTSYTLSGTFRYGPLLCRLSSELIAQNDERLDK-----------CARAAGDQD 321

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            ++        ++Q   +  ++     +                                
Sbjct: 322 TEVHLMFTP-DEAQTVGEIVAYEQGRRAGAT----------------------------- 351

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                   I +LVR    T L             I           D    + +      
Sbjct: 352 --------IGILVRAYHQTVLSEIGL----LYAGIPYRIEGAEPFFDRQDAQAVAGYLAL 399

Query: 428 ILSQEDDLSFV-----------CMLKSPLFNFSEDDI----FKICTQRHETETVYEYIQK 472
                DD                +L  P     + D+      + + R   + V+E  Q+
Sbjct: 400 ATGALDDQRGWIPAERAATLARALLLMPNRYVRQTDLDRAAAWVASGRPFRDWVWERCQE 459

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCS------PHDFFTLILGAKKGRQQFISRFGNEVI 526
                    Q +   + +L+   +  S        DF     G    R++          
Sbjct: 460 AMASEDGYSQRLGSQLAQLLRDIRHLSQLNRDAAGDFIRAFYGYLGLRREIGLGGAVRGT 519

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           +                  S+ EL   L        +   S     V I + H  KG E 
Sbjct: 520 ER-AAVYEVLADFADRRGFSVAELQDYLTRLSARYAQAQRSRRRPTVVITSWHKTKGAEF 578

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V L D  +                                       L+    +    
Sbjct: 579 DAVILPDLRAGKSP-----------------------------------LVYGEIEPDIA 603

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTS 671
           E  RL +V MTRA   L +    + +
Sbjct: 604 EERRLFFVAMTRAKSALYLLAPEDPA 629


>gi|288947725|ref|YP_003445108.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM
            180]
 gi|288898241|gb|ADC64076.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM
            180]
          Length = 1715

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 99/764 (12%), Positives = 204/764 (26%), Gaps = 166/764 (21%)

Query: 3    NRFGLSLNESYELIYKDLWPLP-------YFQVSDINKYVSLSMETGNPTILKKAQTLQQ 55
             R G    ++      D + L        +F        ++ S       ++      QQ
Sbjct: 1030 ARLGAVKVQAAMQFIADYFRLERGEFIRRHFAGRKEILEIATSEAAHRRILVDLRNPAQQ 1089

Query: 56   ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEIN----KKSPDLKEKLKKSQDEFIKIR 111
            A      E    +L+          +  +             P     L  ++    +IR
Sbjct: 1090 AIVAAPPEGSLLVLAGP---GSGKTRVIVHRVAWLLRQGMAHPQDIMVLAYNRSAVSEIR 1146

Query: 112  DRFNTYKMFKSTLASLTLAKYLNAH-----YEEAKKKNCVLDFEDLIINTNDLL----KK 162
             R       ++   S+     L        Y  A ++   +DF  ++      L    ++
Sbjct: 1147 HRLWALVGPEAVGVSVQTVHGLAMRLTGTSYAVALERGEKIDFTTVLRQATARLKQAERE 1206

Query: 163  RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                +  R ++   +  +LIDE QD +   +++I ++       +       +L AVGD+
Sbjct: 1207 DVSESTERDRLLAGLRFLLIDEYQDINGEHYDLISAVAGRALDSEEDR---LSLMAVGDD 1263

Query: 223  KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
             Q+IY+F GA+ + + + +   Q R           +L  ++RST  I+   ++V +   
Sbjct: 1264 DQNIYAFGGADMRFIRQFETDYQAR---------RHQLIENYRSTRHIIACSNRVIAPAR 1314

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
            +    ++++      R  R       +       +                  L   +  
Sbjct: 1315 DRM-KTDEAIRIDHARRERPAGGDLEERDPVTGGR---------------VQVLDVSADP 1358

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
             + A+     +  +   +     G     +     V+ R+ KD          L     +
Sbjct: 1359 RLEAQIALAELQRLYAVEDTTPEG-----RWGRFAVIARQWKDL----EPLAALCRRRGV 1409

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
             V         D    ++   L   +  ++   +   +L                     
Sbjct: 1410 PVRLLRDDHQPDLHRTREGHGLLDLLRGEQRRTAKRRVLVR------------------- 1450

Query: 463  TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                                   + +                                  
Sbjct: 1451 ----------------------ARTLSRWFRRRYGLPVDGLIEH---------------- 1472

Query: 523  NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI-MTVHTAK 581
                  L +F+  T          +++LI  L ++    +    +  N   + MT H AK
Sbjct: 1473 -PFRAALAQFIAETESAAPEGRRVVEDLIEALYEFGSGGRTMAESRANGPMVLMTAHRAK 1531

Query: 582  GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            GLE   V ++D G                                               
Sbjct: 1532 GLEFDHVLILDGGGWSSG------------------------------------------ 1549

Query: 642  STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
               ++  RL YV MTRA   L +C            + T    +       E    +   
Sbjct: 1550 ---DDERRLYYVAMTRARRSLTLC--ERLDGRHPFVRATEGLALRTRPTVPELEPGLDHR 1604

Query: 702  NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
              +     +  +W      N P+ R     ++ D  ++      
Sbjct: 1605 IWVADPSMVYLDWPGRFAPNAPIHRALAALEVGDPLELRPMNRR 1648


>gi|187940200|gb|ACD39328.1| ATP-dependent DNA helicase [Pseudomonas aeruginosa]
          Length = 1708

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 95/296 (32%), Gaps = 45/296 (15%)

Query: 153  IINTNDLLKKR---DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            + +  +LL+ +   +    +R ++ +   +IL+DE QD   +Q+ +I +L       +  
Sbjct: 1205 LSDAVELLEGKRQVEGEDDLREQLLRGYRYILVDEYQDIDDVQYRLISALAGRKAEEEG- 1263

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  + AVGD+ Q+IY++     + + + +      ++          L  ++RS+ +
Sbjct: 1264 ---RLCILAVGDDDQNIYAWRDTSNRFIEQFREDYSASSS---------YLVDNYRSSRN 1311

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            I+   ++V     +       S   I+    R        LWE+       Q      + 
Sbjct: 1312 IIEAANQVIERNPHR----LKSQHPIKIDVKRTESP-RGGLWEEKDPARRGQVLRLLIAG 1366

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                    +    ++ A+     +  +IG             + +   VL R  +     
Sbjct: 1367 -------DESKYNNLQAQAATAELQRLIG---------VESGEWQGCAVLARNHQYLWP- 1409

Query: 390  TFLTRFLKNDYKISVVGN----DRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                +     + +             +T       ++   R          +   L
Sbjct: 1410 ---IQAWCEQHGVPYYLAADKDGVLPITAQRGFVAVIEYLRASGESLSPAHWWRRL 1462


>gi|126725750|ref|ZP_01741592.1| helicase IV [Rhodobacterales bacterium HTCC2150]
 gi|126704954|gb|EBA04045.1| helicase IV [Rhodobacterales bacterium HTCC2150]
          Length = 984

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 121/412 (29%), Gaps = 43/412 (10%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
           FG+  ++        L   P+    +    +    +          +T         + E
Sbjct: 426 FGVRKSQGPNG-EAKLTTAPHVDRKEYLAGMEWKRKVHAEHETILIETFSYERVEGRLTE 484

Query: 65  RFSLLSSFFLTQKFTPQKNIITQ--------EINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                 + ++T    P + +  Q           +         K S        DR   
Sbjct: 485 ALEEKLAPYVTSNPIPPEQVFEQLTEMGQVDAFTQVLSTFLRHFKSSGATISSCLDRAER 544

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            +      A L + + +   Y+        +DFED+I+   + +K          +    
Sbjct: 545 SRDKARGAAFLKIFEPVLEAYQNRLCDR--IDFEDMIVRATEHVK--------AGRYKSP 594

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             H+L+DE QD S  +  ++++L                +FAVGD+ QSIY F G++   
Sbjct: 595 YRHLLVDEFQDISEGRARLLKALM--------AQHEDARVFAVGDDWQSIYRFTGSDIHL 646

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +                  S ++L  +FRS   I            +          T  
Sbjct: 647 MRDFGEEFGGVFAGKSGVHSSVDLGRTFRSVDKIALAARTFVLQNPSQITKQVIPAGTTE 706

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             +  +   G                  + E+  S  D + + +S S  +  +    + +
Sbjct: 707 EPAISVAHYG---------------WGQEGEALKSALDHIEEATSGSETSILLLGRYNFL 751

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
              +    + + + +  K + V  R +        + +   +         D
Sbjct: 752 RPEELPQLHRRYQNLSLKFMTVH-RSKGLEADHVVILKAASDRMGFPSEIVD 802



 Score = 45.3 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 75/253 (29%), Gaps = 29/253 (11%)

Query: 423 ALGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            L + +++Q +D     +    +S       D                      ++  + 
Sbjct: 612 RLLKALMAQHEDARVFAVGDDWQSIYRFTGSDIHLMRDFGEEFGGVFAGKSGVHSSVDLG 671

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ---QFISRFGNEVIDVLDEFLNFT 536
           +    +  I          +P      ++ A    +           +  + L   L+  
Sbjct: 672 RTFRSVDKIALAARTFVLQNPSQITKQVIPAGTTEEPAISVAHYGWGQEGEALKSALDHI 731

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVFLVDTGS 595
                 S +S+  L       P  + + H    N  ++ MTVH +KGLE+  V ++   S
Sbjct: 732 EEATSGSETSILLLGRYNFLRPEELPQLHRRYQNLSLKFMTVHRSKGLEADHVVILKAAS 791

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                                   +  P     + ++  ++   ++    E  RL YV +
Sbjct: 792 DR----------------------MGFPSEIVDDPLLDLVLPKPEEYDHAEERRLFYVAL 829

Query: 656 TRASDQLIICKHS 668
           TRA   + +    
Sbjct: 830 TRARKTVTVLADR 842


>gi|167738898|ref|ZP_02411672.1| DNA helicase II [Burkholderia pseudomallei 14]
          Length = 417

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 99/385 (25%), Gaps = 85/385 (22%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHE 462
                     +   +K  +A  R I +  DD +F  ++  P        I ++    R  
Sbjct: 1   YRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQLADAARLY 60

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRF 521
             ++   I   A    S        I ++       S  +    ++ A      +   R 
Sbjct: 61  DCSMAAAIPYVAGKAGSSLASFANLIAKMRAETARMSLPETVEHVVRASGLADFYQGERE 120

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQE-------------------------------- 549
           G + ++ L E +N            L                                  
Sbjct: 121 GQDRLENLQELVNAATAFVSEEGYGLDTPARSIPLHARASAAPELAAGGADPADAVLAPA 180

Query: 550 --------------LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                         L   L             A  + V++MTVH AKGLE   VF+    
Sbjct: 181 NLADPAQNPDAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLE 240

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F H++                                    L+    EE  RL+YV 
Sbjct: 241 EGLFPHENS----------------------------------ALESDGLEEERRLMYVA 266

Query: 655 MTRASDQLIICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
           +TRA ++L +    +     + + N R+ +              K++           A 
Sbjct: 267 ITRAKERLYLSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAG 326

Query: 713 EWSTHHPENTPLEREETIKQLMDEQ 737
                        R+  +   +   
Sbjct: 327 WGRDWFARPGGGARQGVVDAAVSAP 351


>gi|256830884|ref|YP_003159612.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028]
 gi|256580060|gb|ACU91196.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028]
          Length = 1033

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 121/413 (29%), Gaps = 77/413 (18%)

Query: 20  LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
           +  + +      +    L +        +    LQ+      +  +   L +  L     
Sbjct: 494 MGRVRHLLAQGADPARILILTFTRKAARELKDRLQRLCPGLPVLPKTDTLHALGL---EY 550

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
               +    I       +     +  +      +    +   +    + +       Y +
Sbjct: 551 WTSVMGEAPILLSEESSRRLFAAANPDLQGKELKTAWNEQSLAREDGVRIPGEHTRCYLD 610

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            K +  ++D+ DL+    + L+          +   + +H+L+DEVQD S +Q  ++ +L
Sbjct: 611 DKVRFNLVDYTDLLEFWLEHLE--------LGQCVPDFDHVLVDEVQDLSALQLGLVTAL 662

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                         R  FA+GD  Q+IY F GA         R  + R          I 
Sbjct: 663 CA---------QGGRGFFAIGDPNQAIYGFRGAV--------RDVEGRLRALWPDLKRIR 705

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  ++RS   IL++   +F             T      + +      V           
Sbjct: 706 LVHNYRSAQQILSLAAHLF-------------TEKQTLVAQKSVLASLV----------- 741

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG--TDTIFSNGKKRVIQAKDIL 377
                           L +  SA   A  IA  +  ++G          + + I   DI 
Sbjct: 742 ----------------LFEAQSAEQEAGWIAGRVRELLGGTGHWQADTHEGKNISPGDIA 785

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           VLVR +   P I            I V   ++        +     L R   +
Sbjct: 786 VLVRFKALVPPIAKALES----AGIPVSVPEQESFFVDARV---DLLLRIAGN 831



 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 32/170 (18%)

Query: 530  DEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
              F++     +  + +  L  ++        T   A  A   +V+IMT+H AKGLE  VV
Sbjct: 876  RAFVDLVKAFQACSGWRGLLNMVRL-----ETELCAIRAKAQKVQIMTMHGAKGLEFEVV 930

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            FL      +     +  +   P  +                               +E  
Sbjct: 931  FLPGLEEGILPFAGMDMLLGKPGDDHGLD--------------------------MDEER 964

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
            RL YVG+TRA   L +   ++     K+ +     +V     +  R   I
Sbjct: 965  RLFYVGLTRAKSMLFLSHSASRRVFGKTLKLALSSLVRRLPQDMLRKSAI 1014


>gi|53802296|ref|YP_113003.1| ATP-dependent DNA helicase UvrD [Methylococcus capsulatus str. Bath]
 gi|53756057|gb|AAU90348.1| ATP-dependent DNA helicase, UvrD/REP family [Methylococcus capsulatus
            str. Bath]
          Length = 1469

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 127/361 (35%), Gaps = 42/361 (11%)

Query: 4    RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
               L +   Y  + +D +   +    +      LS +T   +     ++LQ  +Q + + 
Sbjct: 805  AEALRMAMDYFRLDRDAFLRQWLPGRE----KELSRQTTPESWRNIVESLQNPAQQRIVA 860

Query: 64   ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            +     +   L    + +  ++   +++ +  ++ + +  +       +R    ++ K  
Sbjct: 861  DDREQTNVLVLAGPGSGKTRVL---VHRIAYLIRVRRENPRGILALAYNRHAAAEIRKRL 917

Query: 124  LAS-------------LTLAKYLNA-HYEEAKKKNCVLDFEDLIINTNDLLKK----RDV 165
                              LA  L    + E  +K     F++++     LLK      + 
Sbjct: 918  AGLIGDDARGITVLTCHALAMRLAGVSFAERWEKTGDEVFQEVLRQAIALLKGEGLPPEE 977

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            +   R ++      IL+DE QD    Q+E+I +L       +++      L AVGD+ Q+
Sbjct: 978  ADEQRDRLLAGYRWILVDEYQDIGPDQYELISALAGRTLQDEDSR---LNLLAVGDDDQN 1034

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IY+F+GA  + + R +     +            L  ++RST+ I+   +++     +  
Sbjct: 1035 IYAFNGASVEFIRRFEADYAAKPA---------YLTENYRSTSRIIEAANRLIGDAPDR- 1084

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
               + +      R+ +    G    WE +      +             ++        L
Sbjct: 1085 --MKQAHPITIDRARKKAAPGGD--WEAIDPVGQGRVQILPAGVDERTQAVTVMREFERL 1140

Query: 346  A 346
            A
Sbjct: 1141 A 1141



 Score = 41.8 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 78/298 (26%), Gaps = 49/298 (16%)

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            P ++++   +        E    Y  + K       +     +Y+ E   +  +      
Sbjct: 1145 PNWDWTRCAVIARKWDLLEPVRSYCELAKIPVQMAGEETVPFRYLRETRTLLAWLKDTKL 1204

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
                        + +S             L              +   +  E++     R
Sbjct: 1205 VDA--------AKILSWLDERPAGPWWNALRQAAEEYAVETGGAELPSAHFEEWLAEWGR 1256

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  + + +++ H AKGLE   V ++D G +                           
Sbjct: 1257 EIRRRPSGLMLLSAHRAKGLEFDHVAVLDGGWK--------------------------- 1289

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                             K  +    RL YV MTRA   L + +    S    S       
Sbjct: 1290 --------------AGAKEDRHSPRRLYYVAMTRARKTLTLTRIEPNSPLLDSLAGIPDV 1335

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
            +      + +   ++         + +   ++  +PE  P+ +     +  D   + +
Sbjct: 1336 LHRPPTEHMQLPPELSRRYRKLTLKDVHLGFAGRYPETDPIHQAIAALEAGDPLWLKR 1393


>gi|219683319|ref|YP_002469702.1| DNA helicase II [Bifidobacterium animalis subsp. lactis AD011]
 gi|219620969|gb|ACL29126.1| probable DNA helicase II [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 505

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 86/276 (31%), Gaps = 68/276 (24%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   YE  K     +DF D+++    +L   D    +  +I ++I  + +DE QD S 
Sbjct: 183 ATVYEQYEAEKNSRFEIDFNDILLLACHVL---DAFPDVAKRIRRQIGWLTVDEYQDVSP 239

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++               S R +  VGD  Q+IYSF GA    +    +       +
Sbjct: 240 LQHLLMTRWLG----------SNRNICVVGDPAQTIYSFAGATSYYLEHFGKEFAPLTAD 289

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  I L   +RS + I+   ++V        G S      IR  S R G    V  
Sbjct: 290 -------IALNRDYRSVSPIVGYANRV-------LGGSAQRQDYIRLESGR-GTGSRV-- 332

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                         + +  A+ +A  IS ++             
Sbjct: 333 ------------------------MSRIYETDAAEAQAVARQISRILAQGG--------- 359

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             A D  VL R      L+    +       I    
Sbjct: 360 -NASDCAVLTRVGGQQTLVAQALK----QANIPYRL 390



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 102/378 (26%), Gaps = 51/378 (13%)

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           ++       ++  +        +          + D L            +A  I   IG
Sbjct: 168 ATHRTPPAGLEPGQFATVYEQYEAEKNSRFEIDFNDILLLACHVLDAFPDVAKRIRRQIG 227

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             T+        +Q   +   +   ++  ++             S  G   + L      
Sbjct: 228 WLTVDEYQDVSPLQHLLMTRWLGSNRNICVVGDP-----AQTIYSFAGATSYYL--EHFG 280

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY-IQKFANCG 477
           K+   L   I    D  S   ++             +   +           + +     
Sbjct: 281 KEFAPLTADIALNRDYRSVSPIVGYANRVLGGSAQRQDYIRLESGRGTGSRVMSRIYETD 340

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            ++ Q V + I  ++      S       +L    G+Q  +++   +    +   L   +
Sbjct: 341 AAEAQAVARQISRILAQGGNASDCA----VLTRVGGQQTLVAQALKQA--NIPYRLRRNM 394

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             + ++ +       E  +               V I T+H AKGLE   VF++     +
Sbjct: 395 NWQSSALAGTAR--QETAETSNAGVEQLGVEKGRVTISTIHAAKGLEYKHVFVIGLSEGL 452

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             +K       +                                   EE  R+LYV +TR
Sbjct: 453 LPYKPQSDDGDV-----------------------------------EEERRVLYVALTR 477

Query: 658 ASDQLIICKHSNTSNEKK 675
           A D L +     + ++  
Sbjct: 478 AEDTLHLSFAKRSDSQTT 495


>gi|261335293|emb|CBH18287.1| ATP-dependent DNA helicase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 845

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 106/341 (31%), Gaps = 100/341 (29%)

Query: 131 KYLNAHYEEAKKKN-CVLDFEDLIINTNDLLK----KRDV-------------------- 165
            YL   YE    +    +DF DL       L+    + D                     
Sbjct: 191 AYLFRFYESMLHEELNAVDFGDLEQRFLKALRPVRQRNDATSEGNNNSNSSSYSISADAS 250

Query: 166 ----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                + +  ++  +  H ++DE QD + +Q E +  L  D             +  VGD
Sbjct: 251 STLQLSPMAIQLRSQYTHFVVDEFQDLNEVQLECLALLAGD----------ECRVTCVGD 300

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q IY++ GA  +     +    +          I++L  ++RS+A+I+  V++V    
Sbjct: 301 PNQCIYAWRGATAESFNLWRSRFPRSV--------IMKLETNYRSSAEIVCAVNQV---- 348

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                      T +   S +      + L +   +    +                    
Sbjct: 349 -----------THLEQSSHKGQSGTNITLVKCKYAWEQLK-------------------- 377

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  I   I  +         G+ R +    I VL R       +  L   L+ND  
Sbjct: 378 ------LIPRIIERLR--------GRDRSLPYGSIAVLCRTH---RTVRELVTALEND-G 419

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
           I V    R        ++ L++  R  +    ++   C+++
Sbjct: 420 IPVTELRRGAPNSVALVRALLSYLRLCIHPHSNVDVECVIR 460


>gi|190149632|ref|YP_001968157.1| helicase IV [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|190151087|ref|YP_001969612.1| helicase IV [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|189914763|gb|ACE61015.1| helicase IV [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|189916218|gb|ACE62470.1| helicase IV [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
          Length = 954

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 128/375 (34%), Gaps = 51/375 (13%)

Query: 5   FGLS-LNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILK------KAQTLQQA 56
           FG+     +   I    +     +  +++    +  +ET +   ++        Q + + 
Sbjct: 417 FGIDRQGRTRADINAQEYNANIQRKRELHAEHNTTLLETYHYNWVENTLYKRLEQLMNEQ 476

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                 + +  +L +   +  F   KN   + +        + ++  + ++ +I  R   
Sbjct: 477 FIPLKPKSQQEILDALNESGIFKENKNRYLKCL--------QAIRTERLDYQQILKRLTD 528

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            K+  +   + TL   ++  Y +  +    +DF+D+I+    L+K  +           +
Sbjct: 529 AKIVYAKEYA-TLLMRIHDAYVKELRSANEIDFDDMILLATQLVKTGEFKP--------K 579

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             HIL+DE QD S+ + E+++ +         T         VGD+ QSIY F G + + 
Sbjct: 580 WKHILVDEFQDISMARLELLKEIY--------TKGPRPIWTVVGDDWQSIYRFSGGKLEV 631

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
             R          +     ++ +L  ++R    I     +           +  + T + 
Sbjct: 632 TTRF--------NDMVGSHTLSKLEKTYRYNNSIADTAGQFIMQNPEQYQKNVVTHTKVA 683

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                      V L++  V + +          ++    + Q++  + +A  I      +
Sbjct: 684 --------DSCVHLYDSHVVKDEKSEANISLKASAILKLIRQKAPEATVA--ILARYRYL 733

Query: 357 IGTDTIFSNGKKRVI 371
           +         K    
Sbjct: 734 LEDAKSVIKDKNVKF 748



 Score = 44.1 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 29/163 (17%)

Query: 513 GRQQFISRFGNEVIDVLDE--FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                +    +E    L     L    +    +  ++      L +   ++ +       
Sbjct: 690 YDSHVVKDEKSEANISLKASAILKLIRQKAPEATVAILARYRYLLEDAKSVIKDK----- 744

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V+  T H +KGLE+    L+                            +  P       
Sbjct: 745 NVKFWTFHGSKGLEADYCILLGFFQGK----------------------VGFPNQNKEEA 782

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           +V  L+  L      E  RL YV +TRA  +  +   +N  +E
Sbjct: 783 VVEALLPMLDSFPHSEERRLFYVALTRAKKESYLIADANAPSE 825


>gi|27366578|ref|NP_762105.1| DNA helicase IV [Vibrio vulnificus CMCP6]
 gi|27358144|gb|AAO07095.1| DNA helicase IV [Vibrio vulnificus CMCP6]
          Length = 690

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 85/248 (34%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +LT            ++         +         +I++R      + 
Sbjct: 329 WQKHLTKWPIAYLTGDDELGSQSENPKLIAWLDRQLTQFASLGFSKKEIQERLVELPDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L     + +++  K+   +DF  +I      +K+         K       I+
Sbjct: 389 RLNSELSLCWPCFSAWQKMLKETEQIDFPTMISRATKYVKE--------GKFVSPWRFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++ +L E             +LFAVGD+ Q+IY F GA+       +
Sbjct: 441 VDEYQDISPDRLALVEALCE-----TTHKQPGASLFAVGDDWQAIYQFAGADVDLTTGFQ 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +  +          ++  L  ++R    I  V ++           +  S    + ++  
Sbjct: 496 QRFEHS--------TVHHLDTTYRFNNMIGEVANRFIQANPRQLVKTLQSYKQQKQKAVH 547

Query: 302 IGQVGTVQ 309
                +V+
Sbjct: 548 TAPSNSVE 555



 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 48/379 (12%), Positives = 104/379 (27%), Gaps = 44/379 (11%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L  +S    L   +   ++            ++R+++  D   L  +   
Sbjct: 337 PIAYLTGDDELGSQSENPKLIAWLDRQLTQFASLGFSKKEIQERLVELPDYTRLNSELSL 396

Query: 385 DTPLITFLTRFLKNDYKI--SVVGNDRFILTDHLAIKDLMALGRFILSQE---DDLSFVC 439
             P  +   + LK   +I    + +                       Q+   D L+ V 
Sbjct: 397 CWPCFSAWQKMLKETEQIDFPTMISRATKYVKEGKFVSPWRFIMVDEYQDISPDRLALVE 456

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-----------HVIKYI 488
            L           +F +                       +F+                I
Sbjct: 457 ALCETTHKQPGASLFAVGDDWQAIYQFAGADVDLTTGFQQRFEHSTVHHLDTTYRFNNMI 516

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            E+ +     +P      +   K+ +Q+ +    +  ++ +   L+   R      S L 
Sbjct: 517 GEVANRFIQANPRQLVKTLQSYKQQKQKAVHTAPSNSVEKI---LDQLDRKSDKQKSVLL 573

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              +   +            +  +  MT H +KG E+  V ++      F          
Sbjct: 574 LGRNHYHKPDLYDDWVKRFKNLSLNFMTCHASKGKEADYVIILCVDEGQFP--------- 624

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                            K + ++   L +        +  RL YV +TRA +++ I    
Sbjct: 625 ---------------AKKKQLHVDGALTQSSDTFAYADERRLFYVALTRAKEKVWITHSG 669

Query: 669 NTSNEKKSNQRTWYDMVYD 687
             S   +      Y +V  
Sbjct: 670 AGSGFVQELLENDYPVVKH 688


>gi|194687506|ref|XP_001790073.1| PREDICTED: hypothetical protein [Bos taurus]
          Length = 819

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 27/221 (12%)

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           LT+     ++I   + N+         K +Q     +  +     + +     L L   +
Sbjct: 464 LTEINAKAQSIYEHDANELYVSFLSHYKSNQANIASLLAK---PSLSQRESLFLQLFSKV 520

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y++  K +   DF+DL+I +  L+ +         K       I++DE QDTS  + 
Sbjct: 521 YQRYDQLLKTSKEHDFDDLLIESAQLINEN--------KYKSPFKLIIVDEFQDTSQARA 572

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +I SL           +    LF VGD+ Q+IY F G++     + +R+          
Sbjct: 573 RLILSLL--------NQAPEAKLFCVGDDWQAIYRFAGSDISIFTQFERVFGY------- 617

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                +L  +FRS   I  V        ++      ++   
Sbjct: 618 -TKQTKLTQTFRSNQGIANVASGFIQKNKSQLQKVVNAIDK 657



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 39/231 (16%)

Query: 442 KSPLFNFSEDDIFKICTQRHETET--VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           KSP      D+       R       + +  +    C    +Q +              S
Sbjct: 553 KSPFKLIIVDEFQDTSQARARLILSLLNQAPEAKLFCVGDDWQAI------YRFAGSDIS 606

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
               F  + G  K  +   +   N+ I  +           Q + S LQ++++ +++   
Sbjct: 607 IFTQFERVFGYTKQTKLTQTFRSNQGIANV------ASGFIQKNKSQLQKVVNAIDKTTI 660

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
            +       +      T+H++KGL++  V L+   S   +                    
Sbjct: 661 FLPFL---RNCTFEFKTIHSSKGLQADYVILLGLNSGGSAF------------------- 698

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              P  K  + +++ ++   +     E  RL YV +TRA +++ +     +
Sbjct: 699 ---PAEKEDDPLLNLVLPQPEIHDFAEERRLFYVALTRAKEKVYLIGERGS 746


>gi|7414502|emb|CAB86224.1| putative DNA helicase [Prochlorococcus marinus subsp. pastoris str.
           NATL2]
          Length = 304

 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L       Y +A   N  LDF+DL++    LL++ +    IR        H+L+DE QD
Sbjct: 207 KLVAETYRLYRKALAANNALDFDDLLLIPVQLLQQNE---KIRTYWHSRFKHVLVDEYQD 263

Query: 188 TSLIQWEVIRSLTEDFFVGKN-THSSPRTLFAVGDEKQSIY 227
           T+  Q+E+I+ L  +     +    + R++F VGD  QSIY
Sbjct: 264 TNWTQYELIKQLVTNGKDPSSFQDWNNRSVFVVGDADQSIY 304


>gi|74025512|ref|XP_829322.1| ATP-dependent DNA helicase [Trypanosoma brucei TREU927]
 gi|70834708|gb|EAN80210.1| ATP-dependent DNA helicase, putative [Trypanosoma brucei]
          Length = 843

 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 106/341 (31%), Gaps = 100/341 (29%)

Query: 131 KYLNAHYEEAKKKN-CVLDFEDLIINTNDLLK----KRDV-------------------- 165
            YL   YE    +    +DF DL       L+    + D                     
Sbjct: 191 AYLFRFYESMLHEELNAVDFGDLEQRFLKALRPVRQRNDATSEGNNNSNSSSYSISADAS 250

Query: 166 ----SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                + +  ++  +  H ++DE QD + +Q E +  L  D             +  VGD
Sbjct: 251 STLQLSPMAIQLRSQYTHFVVDEFQDLNEVQLECLALLAGD----------ECRVTCVGD 300

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q IY++ GA  +     +    +          I++L  ++RS+A+I+  V++V    
Sbjct: 301 PNQCIYAWRGATAESFNLWRSRFPRSV--------IMKLETNYRSSAEIVCAVNQV---- 348

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                      T +   S +      + L +   +    +                    
Sbjct: 349 -----------THLEQSSHKGQSGTNITLVKCKYAWEQLK-------------------- 377

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  I   I  +         G+ R +    I VL R       +  L   L+ND  
Sbjct: 378 ------LIPRIIERLR--------GRDRSLPYGSIAVLCRTH---RTVRELVTALEND-G 419

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
           I V    R        ++ L++  R  +    ++   C+++
Sbjct: 420 IPVTELRRGAPNSVALVRALLSYLRLCIHPHSNVDVECVIR 460


>gi|284800229|ref|ZP_06390624.1| putative exodeoxyribonuclease V beta chain [Neisseria subflava
           NJ9703]
 gi|284795654|gb|EFC51001.1| putative exodeoxyribonuclease V beta chain [Neisseria subflava
           NJ9703]
          Length = 561

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 88/248 (35%), Gaps = 23/248 (9%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK----KSQDEFIKIRDRFNTYKMF 120
           R   LS   L +      + +  ++ K+     +  +    ++     +      + +  
Sbjct: 291 RLPRLSKQTLEKLSLFSIDTLNSKLKKEYKADADAPEIIQLQALANLGRDLQAMKSAEEA 350

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                 + L  Y+N    E KK      F+DL+++ +  L   +    +           
Sbjct: 351 VFICLQIDLLSYINQSIAEQKKSRRERVFDDLLLDVHQALTTNEHGNALAKAAAANWEIA 410

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           LIDE QDT  +Q+E+ R +  +             LF VGD KQ+IYSF GA+    L+ 
Sbjct: 411 LIDEFQDTDPLQYEIFRQIFIE---------QGCPLFLVGDPKQAIYSFRGADIYAYLQA 461

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +                 L +++RS A ++  +  +F             T      + 
Sbjct: 462 AQD----------ADRHYTLAVNYRSHAKLINGISALFKQKNTPSSWKISITAMSPPAAP 511

Query: 301 RIGQVGTV 308
           + G   TV
Sbjct: 512 KAGCRHTV 519


>gi|37676289|ref|NP_936685.1| DNA helicase IV [Vibrio vulnificus YJ016]
 gi|37200830|dbj|BAC96655.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
          Length = 690

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 85/248 (34%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +LT            ++         +         +I++R      + 
Sbjct: 329 WQKHLTKWPIAYLTGDDELGSQSENPKLIAWLDRQLTQFASLGFSKKEIQERLVELPDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L     + +++  K+   +DF  +I      +K+         K       I+
Sbjct: 389 RLNSELSLCWPCFSAWQKMLKETEQIDFPTMISRATKYVKE--------GKFVSPWRFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++ +L E             +LFAVGD+ Q+IY F GA+       +
Sbjct: 441 VDEYQDISPDRLALVEALCE-----TTHKQPGASLFAVGDDWQAIYQFAGADVDLTTGFQ 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +  +          ++  L  ++R    I  V ++           +  S    + ++  
Sbjct: 496 QRFEHS--------TVHHLDTTYRFNNMIGEVANRFIQANPRQLMKTLQSYKQQKQKAVH 547

Query: 302 IGQVGTVQ 309
                +V+
Sbjct: 548 TAPSNSVE 555



 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 48/379 (12%), Positives = 104/379 (27%), Gaps = 44/379 (11%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L  +S    L   +   ++            ++R+++  D   L  +   
Sbjct: 337 PIAYLTGDDELGSQSENPKLIAWLDRQLTQFASLGFSKKEIQERLVELPDYTRLNSELSL 396

Query: 385 DTPLITFLTRFLKNDYKI--SVVGNDRFILTDHLAIKDLMALGRFILSQE---DDLSFVC 439
             P  +   + LK   +I    + +                       Q+   D L+ V 
Sbjct: 397 CWPCFSAWQKMLKETEQIDFPTMISRATKYVKEGKFVSPWRFIMVDEYQDISPDRLALVE 456

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-----------HVIKYI 488
            L           +F +                       +F+                I
Sbjct: 457 ALCETTHKQPGASLFAVGDDWQAIYQFAGADVDLTTGFQQRFEHSTVHHLDTTYRFNNMI 516

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            E+ +     +P      +   K+ +Q+ +    +  ++ +   L+   R      S L 
Sbjct: 517 GEVANRFIQANPRQLMKTLQSYKQQKQKAVHTAPSNSVEKI---LDQLDRKSDKQKSVLL 573

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              +   +            +  +  MT H +KG E+  V ++      F          
Sbjct: 574 LGRNHYHKPDLYDDWVKRFKNLSLNFMTCHASKGKEADYVIILCVDEGQFP--------- 624

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                            K + ++   L +        +  RL YV +TRA +++ I    
Sbjct: 625 ---------------AKKKQLHVDGALTQSSDTFAYADERRLFYVALTRAKEKVWITHSG 669

Query: 669 NTSNEKKSNQRTWYDMVYD 687
             S   +      Y +V  
Sbjct: 670 AGSGFVQELLENDYPVVKH 688


>gi|320158465|ref|YP_004190843.1| DNA helicase IV [Vibrio vulnificus MO6-24/O]
 gi|319933777|gb|ADV88640.1| DNA helicase IV [Vibrio vulnificus MO6-24/O]
          Length = 690

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 85/248 (34%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +LT            ++         +         +I++R      + 
Sbjct: 329 WQKHLTKWPIAYLTGDDELGSQSENPKLIAWLDRQLTQFASLGFSKKEIQERLVELPDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L     + +++  K+   +DF  +I      +K+         K       I+
Sbjct: 389 RLNSELSLCWPCFSAWQKMLKETEQIDFPTMISRATKYVKE--------GKFVSPWRFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  ++ +L E             +LFAVGD+ Q+IY F GA+       +
Sbjct: 441 VDEYQDISPDRLALVEALCE-----TTHKQPGASLFAVGDDWQAIYQFAGADVDLTTGFQ 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +  +          ++  L  ++R    I  V ++           +  S    + ++  
Sbjct: 496 QRFEHS--------TVHHLDTTYRFNNMIGEVANRFIQANPRQLVKTLQSYKQQKQKAVH 547

Query: 302 IGQVGTVQ 309
                +V+
Sbjct: 548 TAPSNSVE 555



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 48/379 (12%), Positives = 104/379 (27%), Gaps = 44/379 (11%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L  +S    L   +   ++            ++R+++  D   L  +   
Sbjct: 337 PIAYLTGDDELGSQSENPKLIAWLDRQLTQFASLGFSKKEIQERLVELPDYTRLNSELSL 396

Query: 385 DTPLITFLTRFLKNDYKI--SVVGNDRFILTDHLAIKDLMALGRFILSQE---DDLSFVC 439
             P  +   + LK   +I    + +                       Q+   D L+ V 
Sbjct: 397 CWPCFSAWQKMLKETEQIDFPTMISRATKYVKEGKFVSPWRFIMVDEYQDISPDRLALVE 456

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-----------HVIKYI 488
            L           +F +                       +F+                I
Sbjct: 457 ALCETTHKQPGASLFAVGDDWQAIYQFAGADVDLTTGFQQRFEHSTVHHLDTTYRFNNMI 516

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            E+ +     +P      +   K+ +Q+ +    +  ++ +   L+   R      S L 
Sbjct: 517 GEVANRFIQANPRQLVKTLQSYKQQKQKAVHTAPSNSVEKI---LDQLDRKSDKQKSVLL 573

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
              +   +            +  +  MT H +KG E+  V ++      F          
Sbjct: 574 LGRNHYHKPDLYDDWVKRFKNLSLNFMTCHASKGKEADYVIILCVDEGQFP--------- 624

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                            K + ++   L +        +  RL YV +TRA +++ I    
Sbjct: 625 ---------------AKKKQLHVDGALTQSSDTFAYADERRLFYVALTRAKEKVWITHSG 669

Query: 669 NTSNEKKSNQRTWYDMVYD 687
             S   +      Y +V  
Sbjct: 670 AGSGFVQELLENDYPVVKH 688


>gi|119945770|ref|YP_943450.1| UvrD/REP helicase [Psychromonas ingrahamii 37]
 gi|119864374|gb|ABM03851.1| UvrD/REP helicase [Psychromonas ingrahamii 37]
          Length = 971

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 79/248 (31%), Gaps = 31/248 (12%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           + +    L    K +  +    +         K T  +  L K + + Y+        +D
Sbjct: 493 LAEIFAKLIGLYKAAYLDEWSEKRVIRNSTDAKKTEKAFELLKPILSAYQARLLNRNEID 552

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           FED+II     ++          K      +I++DE QD S  +  ++++L         
Sbjct: 553 FEDMIIKALAYVET--------GKFISPWRYIMVDEFQDISEPRARLVKALRGS------ 598

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
             +   ++FAVGD+ Q+IY F GA+       +              +  EL  +FR   
Sbjct: 599 --NKSTSIFAVGDDWQAIYRFSGADITLTTGFEDYF--------GPTTQTELDQTFR--- 645

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
                 +++  +  +    +      +        +     L +              E 
Sbjct: 646 ----FNNRIAQVATDFVSKNPAQINKMIKSFKHQDEPAVSILRKSAGGLKAQDEKIIDEI 701

Query: 329 WTSYFDSL 336
                D +
Sbjct: 702 VNGAVDEV 709



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 32/163 (19%)

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS----------LQELISELEQYPPTIKR 563
            ++       +   ++DE +N  +     + +           L     +L         
Sbjct: 683 LRKSAGGLKAQDEKIIDEIVNGAVDEVLTAITGQIDKPATVYLLARFWFQLPDKASVCHL 742

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
            +      ++  + H  KG E+  V ++   S                           P
Sbjct: 743 NNQYPQLNIQTHSFHGVKGKEADYVVIMGLKSGK----------------------HSFP 780

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            +K+   I+  L+   +K    E  RL YV +TRA  ++ I  
Sbjct: 781 SNKAIPPILDALLAKEEKFEHAEERRLFYVVLTRAKQRVYIIA 823


>gi|309379197|emb|CBX22154.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1741

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/328 (12%), Positives = 105/328 (32%), Gaps = 40/328 (12%)

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
              R +I     +IL+DE QD S   + ++ +L               T+ AVGD+ Q+I+
Sbjct: 1235 EARERIMSGFRYILVDEYQDISERHYRLVSALAGRKR----DDEDKLTILAVGDDDQNIF 1290

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            +++G+  + + R +      + +         L  ++RST +I+T  ++V S   +    
Sbjct: 1291 AYNGSSNEYIRRFQEEYGVDSPDF--------LTFNYRSTQNIITAANRVISGMPDR--- 1339

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
               +   I     R          +    +        +           +    +I ++
Sbjct: 1340 -LKNLHPIAVNPERRQDPDGGGWAKTDPERQG------RVRVIRLHPEFNRRRRFNIQSQ 1392

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
             +   I  +              I    I VL R       +    +       I     
Sbjct: 1393 AVIEEIRRLRN---------LADIPWNSIAVLARNNDTLNPM----QAWCEQNGIPYFLT 1439

Query: 408  DRFIL---TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
            +   L        ++ +  +   +        F  +++  + +  +   ++    + + +
Sbjct: 1440 NEQNLPLCKTREFVRLVHGIETAVDGMLSSADFCRLIEKEIRHSGKK--WENWFAQLKAD 1497

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELI 492
             + E+     +   +  QH   ++   +
Sbjct: 1498 FLNEFPIARPSENTAAPQHPAAFLKNWL 1525


>gi|84687759|ref|ZP_01015631.1| Possible DNA helicase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664260|gb|EAQ10752.1| Possible DNA helicase [Rhodobacterales bacterium HTCC2654]
          Length = 1569

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/438 (15%), Positives = 143/438 (32%), Gaps = 38/438 (8%)

Query: 3    NRFGLSLNESYELIYKDLWPLPYFQ--VSDINKYVSLSMETGNP-TILKKAQTLQQASQT 59
               G+   E+ + +  D + +       + +   +S       P T  +    L   +Q 
Sbjct: 901  AAKGMEDIETAQKLAHDYFAMDEADFMKAWMPGRMSEFRRQATPQTYAEIVDDLGNTTQA 960

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNI------ITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            Q + +     +   L    + +  +          I ++ P+    L  ++    +IR+R
Sbjct: 961  QIVRDDREQTNVLVLAGPGSGKTRVLVHRVAYLVRIKREDPNGILVLAYNRHAAAEIRER 1020

Query: 114  FNTYKMFKS----TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD----V 165
                    +     L    LA  L       +      DF+ L+ +   LL+        
Sbjct: 1021 LRRLIGDDARFVTVLTIHALAMRLVGASFAGRAGAETPDFDTLLTDAARLLRGDGLDKVE 1080

Query: 166  SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            +  +R  + Q    IL+DE QD    ++ +I ++        +      +LFAVGD+ Q+
Sbjct: 1081 AEALRETLIQGFRWILVDEYQDVGPEEYALIAAVAGR---SIDDPDQRISLFAVGDDDQN 1137

Query: 226  IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            IYSF GA  + + + +                + L  ++RS+ +I++  + V    E A+
Sbjct: 1138 IYSFAGASVRHIRQFEADYS---------AKPVFLTDNYRSSGNIVSAANAVI---EGAR 1185

Query: 286  GLSEDSTTTIRHRSSRIGQVGTV----QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
               +        +S R    G V        Q   Q  +     +    +  D + + S 
Sbjct: 1186 ERMKTGHGITLDQSRRKDPPGGVMEKLDPVAQGRVQILACPAGNEAQALAAVDEMVRLSK 1245

Query: 342  ASILARRIAYTI--SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                       I   +      +    +   I  +     +     T  +    R L+  
Sbjct: 1246 LVPDWSWNRAAIISRDWRKLLPVRDFAEALGIPVEMANENLPGVWRTREMQAFIRGLREG 1305

Query: 400  YKISVVGNDRFILTDHLA 417
            +   V   D   L + + 
Sbjct: 1306 HGRMVSLGDLTDLLNTIP 1323



 Score = 38.0 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 60/256 (23%), Gaps = 18/256 (7%)

Query: 477  GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                +        +   +       DF   +           +  G      +  F+   
Sbjct: 1248 PDWSWNRAAIISRDWRKL---LPVRDFAEAL--GIPVEMANENLPGVWRTREMQAFIRGL 1302

Query: 537  LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV-FLVDTGS 595
                     SL +L   L   P +           V    V         V+ +  +   
Sbjct: 1303 RE-GHGRMVSLGDLTDLLNTIPSSRWTDQIGEGLGVFAREVDGKAIPSPDVIEWFAEWSR 1361

Query: 596  QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
              +  +   K+             + I                 +   Q+   RL YV M
Sbjct: 1362 DSWGEQRGLKLLTAHRAKGLEFDDVVIMDGGWERP--------SRNEDQDAPRRLFYVAM 1413

Query: 656  TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            TRA   LI+       + +     +   +      +   +   +      +   +   ++
Sbjct: 1414 TRARRNLIVMS---NDHHEYLPTMSPAVVTRYVEPDIAAMPGPRRFFQSPEMRMVDLSFA 1470

Query: 716  THHPENTPLEREETIK 731
                +  P+ R  +  
Sbjct: 1471 GRQKDQHPVHRAISEA 1486


>gi|84501254|ref|ZP_00999459.1| helicase IV [Oceanicola batsensis HTCC2597]
 gi|84390545|gb|EAQ03033.1| helicase IV [Oceanicola batsensis HTCC2597]
          Length = 894

 Score =  110 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 75/223 (33%), Gaps = 22/223 (9%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
                 D+  T KM K   A L +   +   Y+        +DFED++      ++    
Sbjct: 454 RVEDCSDKAQTLKMGKRAEAFLEIFGAVFREYQSRLGDR--IDFEDMVNRATAFVES--- 508

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
                 +      HIL+DE QD S  + ++I++L       K        +FAVGD+ QS
Sbjct: 509 -----GRYQSPFRHILVDEFQDISTGRAKLIQALKRQHSDAK--------VFAVGDDWQS 555

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY F G++   +             A      ++L  +FRS   I               
Sbjct: 556 IYRFAGSDIHIMRNFGAEFGGTYAGATGVHRTVDLGRTFRSVDKIALAARHFVLRNPAQI 615

Query: 286 GL----SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
                 + ++       +      G   L + V +   ++   
Sbjct: 616 TKKVIPAGETDEPSIRIAWTRRDTGETTLNDAVATLAATEGKG 658



 Score = 42.6 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 62/253 (24%), Gaps = 30/253 (11%)

Query: 424 LGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           L + +  Q  D     +    +S       D             T            + +
Sbjct: 533 LIQALKRQHSDAKVFAVGDDWQSIYRFAGSDIHIMRNFGAEFGGTYAGATGVHRTVDLGR 592

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLIL-----GAKKGRQQFISRFGNEVIDVLDEFLNF 535
               +  I          +P      ++          R  +  R   E           
Sbjct: 593 TFRSVDKIALAARHFVLRNPAQITKKVIPAGETDEPSIRIAWTRRDTGETTLNDAVATLA 652

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               +     S+  L       P   +         +   T+H +KGLE+  V ++   +
Sbjct: 653 ATEGKGGGKPSILILGRYRFLRPDVARLQRQNPGTTISFKTIHASKGLEADHVIILGADN 712

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                                   +  P     + ++S +    +     E  R++YV +
Sbjct: 713 AK----------------------MGFPSMIVDDPLLSLVSPEAEPFPNAEERRVMYVAV 750

Query: 656 TRASDQLIICKHS 668
           TRA   + I    
Sbjct: 751 TRARRTVTILASE 763


>gi|256422207|ref|YP_003122860.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
 gi|256037115|gb|ACU60659.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588]
          Length = 615

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 77/655 (11%), Positives = 183/655 (27%), Gaps = 150/655 (22%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE 106
              A  L++  + +C ++      S           +   Q + +      +   +  D 
Sbjct: 71  RDAAHNLKERVRDRCGDDLSKRFESLTFDSFAKQILDRFKQALPEGYKISDDYDVELSDR 130

Query: 107 --FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN--------------CVLDFE 150
                 R     Y         L L      H    K +                 L F+
Sbjct: 131 KILDNYRFEDENYLNSTDPEVVLKLHAATLPHSARTKAERIRNKIWKEMLSSSPSQLSFK 190

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
            ++     ++K       I+  + Q  +++ +DE QDT+ IQ+++ ++            
Sbjct: 191 MIMRLAELIIKTNP---KIKKYLQQTYHYVFLDEFQDTTDIQYDLFKTCFL--------- 238

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
            S     AVGD+KQ I  + GA+                      + + L  +FR    +
Sbjct: 239 GSGSHFTAVGDDKQRIMIWAGAQNTVFEDFMDD---------TGAARVALSTNFRCAPRL 289

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           +T+++ +          +  S              G   +W    ++ ++Q         
Sbjct: 290 VTLLNHLTEHLLEKTDFATPSDKWQP-------DQGECSIWLFENAEKETQI-------- 334

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                             +   +   I T+          I A+DI +LV  ++   +  
Sbjct: 335 ------------------LFREVKEWITTE---------GINARDICILV--KQQLTMYA 365

Query: 391 FLTRFLKNDYKISVVGNDRFI--LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                  N   I     +++   LT  +++  ++ +   I   ++  +            
Sbjct: 366 GNLIEYFNRNGIKARDENKYQDMLTQEVSVF-IINVLYLIYDPQNTNAKKDA-------- 416

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH-ELIHIAQFCSPHDFFTLI 507
             D +  I T+  + + +              F   +K +  +  +        +     
Sbjct: 417 -FDFLSNIHTELEDQQLL---------KLEFAFTKFVKTLRKDYPNQFFGGDEIETMIAA 466

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
           +    G+ +  + F +     +          E+      + L                 
Sbjct: 467 IVDFAGKDRIRAHFTH--YKNIGVLNKAIDDLEK------ELLHCYDVTNDIVDALDMLI 518

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + + +MT+H +KGLE   V  +      F                             
Sbjct: 519 GKDTIPVMTIHKSKGLEYHTVVFIGLEDGAFWS--------------------------- 551

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                        +   +E     +V ++RA ++++        ++    +++ +
Sbjct: 552 ------------YEKQPDEDKCTFFVALSRAKERVVFTFSEVRPSKFGPREQSMH 594


>gi|322496954|emb|CBZ32024.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 996

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 82/504 (16%), Positives = 156/504 (30%), Gaps = 119/504 (23%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQ---ASQTQCIEERFSLLSSFFLTQKFTPQK 82
           F              T  PT+ ++A  L+     +       RF  L S   T     ++
Sbjct: 53  FTRQAAETLRERVRSTLPPTLTREAHALKLKTFHAFGLECLRRFGALQSD--THVLDARQ 110

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY-LNAHYEEAK 141
                     +   +EK  ++  + +   +R  T K+     +   L    L  +Y++A 
Sbjct: 111 QYELARRVVDTYAQREKSSEAVTDLVDYVNRVKTMKVPPIPQSDPALQDAYLFPYYQKAL 170

Query: 142 -KKNCVLDFEDLIINTNDLLKKRDV----------------------------------- 165
            ++   +DF DL     DL++   V                                   
Sbjct: 171 HEERNAVDFGDLQQMFYDLIRPVPVTAFAASQGCGGGLDEQQPSQGEHQPQQQQQQGKMV 230

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            + +   +  E  H ++DE QD + IQ E++  L  D             +  VGD  Q 
Sbjct: 231 PSDVCTALRAEYTHFVVDEFQDFNEIQVELLALLAGD----------ACRVTCVGDPNQC 280

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY++ GA P      K+   + A        ++ L +++RS   I+   ++V    + A 
Sbjct: 281 IYTWRGAMPNVFGVWKKRFPQTA--------VLTLAMNYRSDGPIVEAANRVVKATQMAH 332

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              E+   T+   +S   ++  V L                                   
Sbjct: 333 HHREERAVTLVQCASEDDELQAVPL----------------------------------- 357

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              +   +                 +   DI +L R R+   L   + +      +I V 
Sbjct: 358 ---VINHVLRRRDAH----------LGYGDIAILCRSRRRVQLYCDVLQS----QRIPVR 400

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQE---DDLSFVCMLKS-PLFNFSEDDIFKICTQRH 461
                 +    +++ L+A  R  +S      D +   +L + PL   S     K      
Sbjct: 401 QLKGMSVDHLASMRSLLAFLRLCVSPHGPEGDANVRTVLNTAPLHRLSAGAAKKFFLS-- 458

Query: 462 ETETVYEYIQKFANCGISKFQHVI 485
             ++V +  +      I  ++H I
Sbjct: 459 -LDSVCQARRAMEAARIRSWRHTI 481


>gi|312883349|ref|ZP_07743075.1| DNA helicase IV [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368965|gb|EFP96491.1| DNA helicase IV [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 685

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 84/248 (33%), Gaps = 22/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L             ++ +       +L        +++ R   +  + 
Sbjct: 329 WQKHLNKWPVAYLVGDEELAGQYSNTKLIQWLSSQVAQLCSLGVGKKELQKRLIEHPDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       ++   K+   +DF  +I      +KK         K      +I+
Sbjct: 389 RLNSELSLVWPCFQAWQNELKQGGYIDFNTMITKATSYVKK--------GKFHNPWRYIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  + E+I SL       K     P  LFAVGD+ QSIY F G++        
Sbjct: 441 IDEYQDISPQRLELIESLC------KGVSKQPCVLFAVGDDWQSIYQFAGSDVDLTTGFS 494

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         +I  L  ++R    I  V ++             +S    + +S  
Sbjct: 495 ERFPHS--------TIHSLDTTYRFNNQIGAVANRFIQKNPFQLEKQLESHKQQKSKSVA 546

Query: 302 IGQVGTVQ 309
           +  +  V+
Sbjct: 547 LINIAQVE 554



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/386 (12%), Positives = 104/386 (26%), Gaps = 62/386 (16%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
             ++    + L  + S + L + ++  ++ +          +KR+I+  D     R   +
Sbjct: 337 PVAYLVGDEELAGQYSNTKLIQWLSSQVAQLCSLGVGKKELQKRLIEHPDY---TRLNSE 393

Query: 386 ----TPLITFLTRFLKNDYKISVV--GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
                P        LK    I                   +          Q+     + 
Sbjct: 394 LSLVWPCFQAWQNELKQGGYIDFNTMITKATSYVKKGKFHNPWRYIMIDEYQDISPQRLE 453

Query: 440 MLKSPLFNFSEDD--IFKICTQRHETETVYEYIQKFANCGISKFQ-----------HVIK 486
           +++S     S+    +F +                       +F                
Sbjct: 454 LIESLCKGVSKQPCVLFAVGDDWQSIYQFAGSDVDLTTGFSERFPHSTIHSLDTTYRFNN 513

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTLRNE----- 540
            I  + +     +P      +   K+ + + ++     +V  VL +        E     
Sbjct: 514 QIGAVANRFIQKNPFQLEKQLESHKQQKSKSVALINIAQVEKVLAKLNTLEKGYEVLLLG 573

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +N Y   + L    E++              +  MT H +KG E+  V +++     F  
Sbjct: 574 RNHYHKPELLFEWSERFKFL----------SIGFMTCHASKGREADYVIVLNVDEGQFPA 623

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K            +    P                          E  RL YV +TRA  
Sbjct: 624 KVKALHLDNALSQNSDTFPY------------------------AEERRLFYVALTRAKK 659

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVY 686
           ++ +   +  S+  K      Y ++ 
Sbjct: 660 KVWLAYSAGGSSFIKELLEGDYPIIK 685


>gi|270283976|ref|ZP_05965334.2| putative DNA helicase II [Bifidobacterium gallicum DSM 20093]
 gi|270277840|gb|EFA23694.1| putative DNA helicase II [Bifidobacterium gallicum DSM 20093]
          Length = 510

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 94/293 (32%), Gaps = 66/293 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             L   YE  K     +DF D+++    +++    +A +   I  ++  + +DE QD S 
Sbjct: 190 AELYELYEVEKTNRGQIDFNDILLIACHVMEDYPQAARM---IRHDVGWLTVDEYQDVSP 246

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +Q  ++     D         + R +  VGD  Q+IYSF GA    + +           
Sbjct: 247 LQHRLMTLWLGD---------NNRNVCVVGDPAQTIYSFAGASSYYLQQFANEF------ 291

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            G   + IEL   +RS   I+   + V            D    +R  + R G       
Sbjct: 292 -GPLDADIELATDYRSNPPIIRCANGVLKRAP-------DPKQYLRLHAVREGSARV--- 340

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                   S     +    A+RIA  I   +   +         
Sbjct: 341 ------------------------SKTAYETDDDEAQRIASLIRRQVDRGS--------- 367

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
               D  +L R     P    L + L      +VV +D       L+ +DL  
Sbjct: 368 -SPNDFAILTRINAQQP---KLMKALHQQGLGTVVHSDGGWQYTSLSQRDLEH 416



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 37/125 (29%), Gaps = 36/125 (28%)

Query: 551 ISELEQYPPTIKRAHSA-NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
             +LE      +          V I T+H AKGLE P VFL+     +  +         
Sbjct: 411 QRDLEHMHEEQRAKLQQVTQGAVTISTIHAAKGLEYPHVFLIGCSEGLLPYGQNNTS--- 467

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                              EE  RLLYVG+TRA D L +     
Sbjct: 468 --------------------------------EAIEEERRLLYVGVTRAEDSLHLSYARR 495

Query: 670 TSNEK 674
             +  
Sbjct: 496 KDDSS 500


>gi|146277860|ref|YP_001168019.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025]
 gi|145556101|gb|ABP70714.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025]
          Length = 978

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 18/195 (9%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            +    +    K+ +   A L +   + A Y+        +DFED+I+   D ++     
Sbjct: 531 IVDCETKSEKMKLGRRAKAFLAVFAPVFAEYQRRL--GGRIDFEDMILRAADYVET---- 584

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                +      HIL+DE QD S  +  ++++L                +FAVGD+ QSI
Sbjct: 585 ----GRYTSPFRHILVDEFQDISQSRARLVKALK--------AQHPEVRIFAVGDDWQSI 632

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           + F G++   +    R               ++L  +FRS   I                
Sbjct: 633 FRFAGSDIHLMRHFGREFGGDFDGETGVHRTVDLGRTFRSVDQIAFAARTFVLRNPAQIQ 692

Query: 287 LSEDSTTTIRHRSSR 301
                       + +
Sbjct: 693 KQIVPAGIAAEPAIK 707



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 22/128 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +   T+H +KGLE+  V L++  S                           P     + 
Sbjct: 764 NISFKTIHASKGLEADHVILLNADSGR----------------------TGFPSEIVDDP 801

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           ++S +    +     E  R++YV MTRA   L I   +   +      R+  D    +  
Sbjct: 802 LLSLVSPEEEAFPNAEERRVMYVAMTRARHTLTILASNARPSSFVVELRSDPDYGIAAAP 861

Query: 691 NDERVKKI 698
           + +    +
Sbjct: 862 DAQTENHV 869


>gi|302521800|ref|ZP_07274142.1| LOW QUALITY PROTEIN: helicase [Streptomyces sp. SPB78]
 gi|302430695|gb|EFL02511.1| LOW QUALITY PROTEIN: helicase [Streptomyces sp. SPB78]
          Length = 394

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 103/330 (31%), Gaps = 59/330 (17%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
             ++       A    A Y +      V+D+ +L+   + L ++ DV+      + Q  +
Sbjct: 12  ASRTGRPDWQAAAAFLAEYLDVLDLQGVIDYAELVHRADLLARRPDVAKD----LAQAYD 67

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            + +DE QDT   Q  ++ +L              RTL A GD  QSIY+F GA+   +L
Sbjct: 68  AVYVDEYQDTDPAQVRLLEALAGQ----------GRTLLAFGDPDQSIYAFRGADVNGIL 117

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                 +   T  G    +  LP + R+   +L     +       +  +          
Sbjct: 118 DFPDTFR---TTGGAPAPVAVLPTARRAARRVLDATRALALRIPLTRLPAAAVRAHRDQL 174

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            +R G    V       ++ D                                 +++++ 
Sbjct: 175 PTRDGGSAEVYTCPSPGAETD--------------------------------HVADLLR 202

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV-VGNDRFILTDHLA 417
              +  +     +   D+ VL+R     P      R       + V    D   L    A
Sbjct: 203 RAHLEDD-----VPWGDMAVLLRAGSRLP----ALRRSLTAAGVPVDTAGDELPLRLEPA 253

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           ++ L+   R     E         ++P   
Sbjct: 254 VQPLLTALRVTAEAEARGETPQAGETPPVG 283


>gi|50304809|ref|XP_452360.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641493|emb|CAH01211.1| KLLA0C03674p [Kluyveromyces lactis]
          Length = 708

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/505 (15%), Positives = 141/505 (27%), Gaps = 108/505 (21%)

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK--IDQEINHILIDEVQDTSLIQWEVI 196
           +  K + VL  +DLI    + LK+ +      +   +  E   ++IDE QD     ++++
Sbjct: 176 KLMKHSNVLTNDDLIKMAVEFLKEPNSEEDTAFTKFVLNEAKVLIIDEFQDLYPGIFKLL 235

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           ++L              +     GD  QSIY F G+  + +         R     +KF+
Sbjct: 236 KTLLG-----------QKHFLIFGDINQSIYEFLGSNKEVMSEL-----DRLRPDDKKFT 279

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              +  +FRST +I    + V +                     +I +   V+     V 
Sbjct: 280 KY-IHDNFRSTPEITAAANAVINQT----------------VPVQIKRENIVEKHPSGVY 322

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                C    +                     I   I  ++              +  DI
Sbjct: 323 PIKYNCEELIDELD-----------------FIVSEICQLV----------CSSAKLSDI 355

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILS----- 430
            +L R    +  I            I V              I+ ++ L +  +S     
Sbjct: 356 GILARTNSHSKAIADHLSTF----GIPVSKLTTQPDWMSDQRIRFMIDLLQVAVSVIEEA 411

Query: 431 --QED------DLSFVCMLKS--PLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGIS 479
              +D        S   ++ +   L  F  + + K+         +++ ++         
Sbjct: 412 TLPKDASFTMKTKSNFSVIVTLAALKGFGSNTLQKLHENATATGASIWHFLTNTPVSKWG 471

Query: 480 KFQHVIKYIHELIHIAQFC----------SPHDFFTL---ILGAKKGRQQFISRFGNEV- 525
               V K +   +                 PH        ++                  
Sbjct: 472 FTPAVTKKLENYLLAVSTLINDPPILEVEQPHILIDNCSSVISKLDLPLFMCDSNSESGS 531

Query: 526 -IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR---------AHSANHNEVRIM 575
               L EF +    +  +    L      LE +                       V + 
Sbjct: 532 FQVNLKEFYSAIKLSLLSKPQDLPTATWFLETFHDQSIIYHNNQKSITQEQNTLGSVNVS 591

Query: 576 TVHTAKGLESPVVFLVDTGS-QVFS 599
           T+H AKGLE P+VFL+       F 
Sbjct: 592 TIHCAKGLEFPIVFLMGRTDYGNFP 616


>gi|148976735|ref|ZP_01813407.1| DNA helicase IV [Vibrionales bacterium SWAT-3]
 gi|145963848|gb|EDK29107.1| DNA helicase IV [Vibrionales bacterium SWAT-3]
          Length = 691

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  S     +LT       ++   ++        E+L  S     +++ +   ++ + 
Sbjct: 329 WQKHLSKWPIAYLTGDDELGSHVSNLKLIGWLEKQLEQLNASGLTKKEVQQQLIDHRDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++A K+   +DF  +I      ++K         K       I+
Sbjct: 389 RLNSELSLCWPCVTAWQKALKEENHIDFSTMISRATQYVEK--------GKFISPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  +  ++ +L               ++FAVGD+ QSIY F GA+       K
Sbjct: 441 IDEYQDISPDRLALVEALCNQSKAEHQA-----SIFAVGDDWQSIYQFAGADVDLTTGFK 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         +I  L  ++R    +  V ++             +S    + ++  
Sbjct: 496 DRF--------ASSTIHHLDTTYRFNNQLGAVANRFVQENPIQLPKELNSFKQQKQKAVY 547

Query: 302 IGQVGTVQ 309
                 V+
Sbjct: 548 SAPSKEVE 555



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/382 (13%), Positives = 107/382 (28%), Gaps = 50/382 (13%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L    S   L   +   +  +  +       ++++I  +D   L  +   
Sbjct: 337 PIAYLTGDDELGSHVSNLKLIGWLEKQLEQLNASGLTKKEVQQQLIDHRDYTRLNSELSL 396

Query: 385 DTPLITFLTRFLKNDYKISV--------VGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             P +T   + LK +  I             ++           +           D L+
Sbjct: 397 CWPCVTAWQKALKEENHIDFSTMISRATQYVEKGKFISPWKFIMIDEYQDI---SPDRLA 453

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-----------HVI 485
            V  L +      +  IF +                       +F               
Sbjct: 454 LVEALCNQSKAEHQASIFAVGDDWQSIYQFAGADVDLTTGFKDRFASSTIHHLDTTYRFN 513

Query: 486 KYIHELIHIAQFCSPHDFFTLILG-AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
             +  + +     +P      +    ++ ++   S    EV  +LD+    +    + + 
Sbjct: 514 NQLGAVANRFVQENPIQLPKELNSFKQQKQKAVYSAPSKEVEKILDQLNRQSKG--KTNK 571

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           S L    +   +              ++  MT H +KG E+  V ++      F      
Sbjct: 572 SVLLLGRNHYHKPELLEDWKKIFTSIDINFMTCHASKGKEADFVIILCVDEGQFP----- 626

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                K + +I   L +        E  RL YV MTRA +++ I
Sbjct: 627 -------------------AKKKQLHIDGALTESSDVFPYAEERRLFYVAMTRAKEKVWI 667

Query: 665 CKHSNTSNEKKSNQRTWYDMVY 686
               + S   +    + Y +V 
Sbjct: 668 THSGDGSGFVQELHGSDYPVVR 689


>gi|28900527|ref|NP_800182.1| DNA helicase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365408|ref|ZP_05777945.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus K5030]
 gi|260877474|ref|ZP_05889829.1| DNA helicase IV [Vibrio parahaemolyticus AN-5034]
 gi|260894855|ref|ZP_05903351.1| DNA helicase IV [Vibrio parahaemolyticus Peru-466]
 gi|28808907|dbj|BAC62015.1| helicase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085316|gb|EFO35011.1| DNA helicase IV [Vibrio parahaemolyticus Peru-466]
 gi|308090545|gb|EFO40240.1| DNA helicase IV [Vibrio parahaemolyticus AN-5034]
 gi|308114411|gb|EFO51951.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus K5030]
          Length = 689

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 85/248 (34%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        +    ++          L        +++++   ++ + 
Sbjct: 329 WQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDSQLSHLAAVGLTKKQVQEKLVDHQDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L     + +++  K++  +DF  +I    D + K         K       ++
Sbjct: 389 RLNSELALCWPCFSAWQKMLKESNQVDFPTMISRATDYVNK--------GKFVSPWRFVM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  +I +L E             TLFAVGD+ Q+IY F GA+   +   K
Sbjct: 441 VDEYQDISPDRLALIEALCE-----STEKQPGATLFAVGDDWQAIYQFAGADVDLITGFK 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V +       +    + +S    + +S  
Sbjct: 496 ERFAHS--------TVHHLDTTYRFNNQIGDVANTFVQQNPSQLPKTLNSHKQRKQKSVH 547

Query: 302 IGQVGTVQ 309
                 V+
Sbjct: 548 TAPSNQVE 555



 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 105/378 (27%), Gaps = 46/378 (12%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +     +    ++    D L   S    L   +   +S++          +++++
Sbjct: 323 PTNFKRWQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDSQLSHLAAVGLTKKQVQEKLV 382

Query: 372 QAKDILVLVRKRK-DTPLITFLTRFLKNDYKISV-----VGNDRFILTDHLAIKDLMALG 425
             +D   L  +     P  +   + LK   ++          D       ++    + + 
Sbjct: 383 DHQDYTRLNSELALCWPCFSAWQKMLKESNQVDFPTMISRATDYVNKGKFVSPWRFVMVD 442

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ--- 482
            +     D L+ +  L           +F +                       +F    
Sbjct: 443 EYQDISPDRLALIEALCESTEKQPGATLFAVGDDWQAIYQFAGADVDLITGFKERFAHST 502

Query: 483 --------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFL 533
                        I ++ +     +P      +   K+ +Q+   +   N+V  +LD+  
Sbjct: 503 VHHLDTTYRFNNQIGDVANTFVQQNPSQLPKTLNSHKQRKQKSVHTAPSNQVEKILDQLN 562

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                  Q     L       +            N + +R MT H +KG E+  V ++  
Sbjct: 563 QQAK---QTKSVLLLGRNHYHKPDLYDDWLRRFPNLD-IRFMTCHASKGREADFVIILAV 618

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               F                           K + +I   L +   K    E  RL YV
Sbjct: 619 DEGQFP------------------------AKKKQIHIDGALTESKDKFPYAEERRLFYV 654

Query: 654 GMTRASDQLIICKHSNTS 671
            +TRA +++ I      S
Sbjct: 655 AVTRAKEKVWITHTGAGS 672


>gi|313668408|ref|YP_004048692.1| DNA helicase [Neisseria lactamica ST-640]
 gi|313005870|emb|CBN87326.1| putative DNA helicase [Neisseria lactamica 020-06]
          Length = 1741

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 107/328 (32%), Gaps = 40/328 (12%)

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
              R +I     +IL+DE QD S   + ++ +L               T+FAVGD+ Q+I+
Sbjct: 1235 EARERIMSGFRYILVDEYQDISERHYRLVSALAGRKR----DDEDKLTIFAVGDDDQNIF 1290

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            +++G+  + + R +      + +         L  ++RST +I+   ++V S   +    
Sbjct: 1291 AYNGSSNEYIRRFQEEYGVDSPDF--------LTFNYRSTQNIIAAANRVISGMPDR--- 1339

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
               +   I     R        +W Q   +   +                +    +I ++
Sbjct: 1340 -LKNLHPIAVNPERRQDPDGG-IWTQTDPERQGR-----VRVIRLHPEFNRRRRFNIQSQ 1392

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
             +   I  +              I    I VL R       +    +       I     
Sbjct: 1393 AVIAEIRRLRN---------LADISWNSIAVLARNNDTLNPM----QAWCEQNSIPYFLT 1439

Query: 408  DRFILT---DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
            +   L+       ++ +  +            F  +++  + +  +   ++    + + +
Sbjct: 1440 NEQNLSLCKTREFVRLVHGIETAGDGMLSSADFCRLIEKEIRHSGKK--WENWFAQLKAD 1497

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELI 492
             + E+     +   +  QH   ++   +
Sbjct: 1498 FLNEFPIARPSENTAAPQHPAAFLKNWL 1525


>gi|313894242|ref|ZP_07827807.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441066|gb|EFR59493.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 862

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 133/413 (32%), Gaps = 71/413 (17%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              + ++        E+L+K Q   I+ +       ++      L       A Y+E+  
Sbjct: 145 GFYSDDLLGDYKRTIERLQKEQRAAIEQQFSSFGNVLYSELHDFLNHGHEWIAAYDESLA 204

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF DLI   + L +       +R +     ++I +DE+QDT +++++V+  L E 
Sbjct: 205 SVHGLDFTDLICGVHRLFQDP----VVRERWRSRYSYISVDEMQDTGVLEYKVLEMLWE- 259

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +   GD  Q+IY + G++P    R  +               I    
Sbjct: 260 ----------GNHVLLCGDYFQTIYEWRGSDP---FRLLKQFDADFMPLK-----IIFYE 301

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS                        +  T+  ++ +      V      + + +S+ 
Sbjct: 302 NYRS----------------------NWTLFTMAFKTLQNMFPDLVGSIYTELPRANSER 339

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             +        +S  +        R I   I  +               +  +I VLVR 
Sbjct: 340 KGKPVLIKGCKNSYLEG-------RYIYEAICAL--------------PKDANIGVLVRD 378

Query: 383 RKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            K    ++     L N+     +   +  D F       IKD+MA  + +++  D +S  
Sbjct: 379 NKKAQRLSDSFERLNNEKPEDERRHFMIIDEFKFFRRQEIKDVMAYFKLLMNPNDSVSAK 438

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETV-YEYIQKFANCGISKFQHVIKYIHE 490
            ++K  +    +  I  I +       +               +  ++  +  
Sbjct: 439 RIIKRYVAGIGDARIAAIESPETRQVGLKLTDFMDMPIFEAEPYAKLVSGLEH 491



 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 63/224 (28%), Gaps = 39/224 (17%)

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
           N   + F ++   +  L   A    P      I+      + + S      ++ + +   
Sbjct: 672 NKYKAAFTNIASQMATLRRKAYTELPTKLLAYIMNQMGVLEYYKSHGEAAKVEHIRDLYR 731

Query: 535 FTLRNEQ--NSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFL 590
              + +      + L  L   L+    T         N + + I+T+H AKG E   VFL
Sbjct: 732 IMEKLDAAYEGPAGLARLNQILQMAALTAGEPAQQVRNEDRIPIITIHQAKGSEFDHVFL 791

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F                                        + +  ++E  RL
Sbjct: 792 AGLNEGTFPSPF-----------------------------------AIAEGREDEEKRL 816

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            YV +TR   +L I         +     +  + +       ER
Sbjct: 817 FYVAITRPKQELTITFEQTNIRGRAVQPSSLLNYMPRDNELVER 860


>gi|328470471|gb|EGF41382.1| DNA helicase IV [Vibrio parahaemolyticus 10329]
          Length = 689

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 85/248 (34%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        +    ++          L        +++++   ++ + 
Sbjct: 329 WQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDSQLSHLAAVGLTKKQVQEKLVDHQEYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L     + +++  K++  +DF  +I    D + K         K       ++
Sbjct: 389 RLNSELALCWPCFSAWQKMLKESNQVDFPTMISRATDYVNK--------GKFVSPWRFVM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  +I +L E             TLFAVGD+ Q+IY F GA+   +   K
Sbjct: 441 VDEYQDISPDRLALIEALCE-----STEKQPGATLFAVGDDWQAIYQFAGADVDLITGFK 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V +       +    + +S    + +S  
Sbjct: 496 ERFAHS--------TVHHLDTTYRFNNQIGDVANTFVQQNPSQLPKTLNSHKQRKQKSVH 547

Query: 302 IGQVGTVQ 309
                 V+
Sbjct: 548 TAPSNQVE 555



 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 67/228 (29%), Gaps = 30/228 (13%)

Query: 446 FNFSEDDIFKICTQRHETET-VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                  I++      +  T   E         +         I ++ +     +P    
Sbjct: 473 VGDDWQAIYQFAGADVDLITGFKERFAHSTVHHLDTTYRFNNQIGDVANTFVQQNPSQLP 532

Query: 505 TLILGAKKGRQQ-FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
             +   K+ +Q+   +   N+V  +LD+         Q     L       +        
Sbjct: 533 KTLNSHKQRKQKSVHTAPSNQVEKILDQLNQQAK---QTKSVLLLGRNHYHKPDLYDDWL 589

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               N + +R MT H +KG E+  V ++      F                         
Sbjct: 590 RRFPNLD-IRFMTCHASKGREADFVIILAVDEGQFP------------------------ 624

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             K + +I   L +   K    E  RL YV +TRA +++ I      S
Sbjct: 625 AKKKQIHIDGALAESKDKFPYAEERRLFYVAITRAKEKVWITHTGAGS 672


>gi|66046145|ref|YP_235986.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
            B728a]
 gi|63256852|gb|AAY37948.1| ATP-dependent DNA helicase RecQ [Pseudomonas syringae pv. syringae
            B728a]
          Length = 1473

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/342 (11%), Positives = 102/342 (29%), Gaps = 47/342 (13%)

Query: 156  TNDLLKKR---DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
              +LL+ +   +    +R ++ +   +IL+DE QD   +Q+ ++ +L       +     
Sbjct: 970  AVELLEGKRQVEGEDDLREQLMRGYRYILVDEYQDIDDLQYRLVSALAGRKSEEEG---- 1025

Query: 213  PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
               + AVGD+ Q+IY++     + + R +              +   L  ++RS+  I+ 
Sbjct: 1026 RLCILAVGDDDQNIYAWRDTNNRYIERFRDEYS---------ATKNYLVDNYRSSGRIID 1076

Query: 273  VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
              ++V     +              R+   G       WE +  + + +    +      
Sbjct: 1077 AANRVIGRNPDRLKKDHPIQIDTVRRAMPKGGD-----WETLDIEREGRVLRLKIDAQ-- 1129

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
                   +  ++ A+     +  ++  D+   +G           VL R  ++       
Sbjct: 1130 -----GHARVNLQAQAAMTELQRLLSLDSEDWHGC---------AVLARTHQNLLP---- 1171

Query: 393  TRFLKNDYKISVVGN----DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
             +     + +             LT        + + R I            L       
Sbjct: 1172 LQAWCEAHGVPYCLAADKEGVLPLTAQRGFVQAVEILREITEPLSASETWTYLG--KRQL 1229

Query: 449  SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              +    +     +    +      A   +       + + +
Sbjct: 1230 GPEWYDMLLVAFDQLTAEFGQCPLSAEILLDWLYDYFRELRQ 1271



 Score = 44.5 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 61/417 (14%), Positives = 115/417 (27%), Gaps = 63/417 (15%)

Query: 354  SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            +N +         K   IQ   +   + K  D   +           KI   G+ R  L 
Sbjct: 1078 ANRVIGRNPDRLKKDHPIQIDTVRRAMPKGGDWETLDIEREGRVLRLKIDAQGHARVNLQ 1137

Query: 414  DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH-ETETVYEYIQK 472
               A+ +L  L        +D     +L       +  ++  +                K
Sbjct: 1138 AQAAMTELQRLLSL---DSEDWHGCAVLAR-----THQNLLPLQAWCEAHGVPYCLAADK 1189

Query: 473  FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                 ++  +  ++ +  L  I +  S  + +T +            + G E  D+L   
Sbjct: 1190 EGVLPLTAQRGFVQAVEILREITEPLSASETWTYLGKR---------QLGPEWYDMLLVA 1240

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
             +           S + L+  L  Y   +++        + + TVH+AKGLE   V ++D
Sbjct: 1241 FDQLTAEFGQCPLSAEILLDWLYDYFRELRQQP---RKGLYLGTVHSAKGLEFRHVVVLD 1297

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
             G                                                T  +  RL Y
Sbjct: 1298 GGWSTQP------------------------------------------ETLSDERRLYY 1315

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            VGMTRA   L +C++   +              +   +  E  K+    +  + D   A 
Sbjct: 1316 VGMTRAEQTLTLCEYPEGNPFCSQLTEEVMARTFQGEYLAELEKRYLQLSLKDIDLDYAG 1375

Query: 713  EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
              +     +  L   E    L  +    + L       +      + S      +  
Sbjct: 1376 RQNPTASIHKVLAALEPGDMLSFKAHEDRYLIQDANGYVIGRTAKSFSLDLDIEECE 1432


>gi|217975036|ref|YP_002359787.1| UvrD/REP helicase [Shewanella baltica OS223]
 gi|217500171|gb|ACK48364.1| UvrD/REP helicase [Shewanella baltica OS223]
          Length = 996

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 84/236 (35%), Gaps = 19/236 (8%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           E+ K    L    K +  +   +   F      + T  +  L + + A YE+    N  +
Sbjct: 512 ELAKMFSQLIGLYKAACLDEHGLEGVFARAADAQQTRKAFELLEPILARYEQHLAINGDI 571

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DFED+I      L+        R +       I++DE QD S  +  ++R+L +      
Sbjct: 572 DFEDMIGKALTYLQ--------RGQFISPWRFIMVDEFQDISEPRARLVRALRDSCAPHS 623

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                  +LF VGD+ Q+IY F GA+     +                +  +L L+FR  
Sbjct: 624 KAQ---ASLFCVGDDWQAIYRFSGADVSLTTQFTHYF--------GPTAQSDLDLTFRFN 672

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           + I  V  +  +           S   +   +  I + G  +   +     ++   
Sbjct: 673 SSIGQVATQFVTQNPTQLSKDIRSLKQVASPAVSILRRGENEPPSKDEPSPNALEQ 728



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 24/116 (20%)

Query: 553 ELEQYPPTIKRAHSANHNEVRI--MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
             +    T      A +  V+I   + H +KG E+  V ++   +               
Sbjct: 757 WFQLPDKTQVNQLKAKYPNVKIECQSFHASKGKEADYVVIMGMKTG-------------- 802

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                       P  K    I+   +   +     E  RL YV +TRA  ++ +  
Sbjct: 803 --------MHGFPSMKITPPILDAFLPKTEAFEFAEERRLFYVALTRAKHRVYVIA 850


>gi|311694085|gb|ADP96958.1| DNA helicase [marine bacterium HP15]
          Length = 554

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 90/692 (13%), Positives = 197/692 (28%), Gaps = 163/692 (23%)

Query: 28  VSDINKYVSLSMETGN-PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIIT 86
           V++     +L++E        ++  +L   +     +       + FL +  T       
Sbjct: 4   VAEWKPADNLTLEPNAQKAATEQIHSLALTAGPGAGKTEMLAQRADFLLRSGTCT---YP 60

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           + I   S  + +  +  ++     +           +      AK +   +    + N  
Sbjct: 61  KRILAISFKV-DASQNLRERVK--KRCGYDLASRFDSYTFHAFAKRIIDRFRPVLEGNDA 117

Query: 147 LD----------------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           LD                F DL+     +LK   ++   R  + Q  + + +DE QD + 
Sbjct: 118 LDVGFTIGDQKVPRKQITFVDLVPLAIQILKTSSIA---RNAVRQTYSDVFLDEFQDCTH 174

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q+E+++            H++P  L AVGD KQ I  + GA     L   +        
Sbjct: 175 QQYELVKL---------AFHNTPVRLTAVGDVKQKIMGWAGALEGIFLTFAQDFS----- 220

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                  + L  +FRS   +L V +++                              V  
Sbjct: 221 ----AMPLNLYRNFRSVPGLLRVQNEIIK----------------------------VID 248

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            + V+     + +  +   T + +S  +       A  +A TI + I T+          
Sbjct: 249 PDSVMPDEQLEGDAGEILSTQFANSSDE-------ASYLADTIKSWIETEE--------- 292

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFIL 429
           +   +I +LV   K   L             I          +T   A + ++     + 
Sbjct: 293 LAPSEIAILVS--KQLDLYAHDLIKALTARGIPFRNEQEMQDITVEPAARLIVDYLSCLY 350

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
            + +  +++              + K      + +   E  +   +    + + +     
Sbjct: 351 GKREPKAWIR-------------LMKQLQPFADDDVQSEVSRSLDSFIRKQRKAMAGQTA 397

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           E      +     F   +                 + DV+ +  N      Q+       
Sbjct: 398 EQRSTEWWEPAKLFLQHVGIETVAALSPEYESKARLRDVITDTKNRISELSQS------- 450

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
                            ++   VRI+T+H +KGLE   V ++   +++F           
Sbjct: 451 ------TSTLEEALDRFSDDESVRILTIHKSKGLEFDSVIMMAIENEIFFGNQ------- 497

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                              +E     +VG++RA  +L++     
Sbjct: 498 -----------------------------------DENRCAFFVGVSRAKRRLVLT---- 518

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            +  +   +              E +  ++  
Sbjct: 519 NAKLRPRPENHGGMWREHRSPQSEYLSYVEPF 550


>gi|261350409|ref|ZP_05975826.1| putative topoisomerase DNA-binding C4 zinc finger domain protein
            [Methanobrevibacter smithii DSM 2374]
 gi|288861192|gb|EFC93490.1| putative topoisomerase DNA-binding C4 zinc finger domain protein
            [Methanobrevibacter smithii DSM 2374]
          Length = 2155

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 85/251 (33%), Gaps = 26/251 (10%)

Query: 48   KKAQTLQQASQTQCIEERFSLLSSFFLTQK-FTPQKNIITQEINKKSPDLKEKLKKSQDE 106
            + A+ LQ         +   +       +     +  I+  +   +        +    E
Sbjct: 1579 RLAEKLQAQGVEFNEIDYREVYRILLENKTIKEWEDFIVLLKTFIELFKGNNYDETKFKE 1638

Query: 107  FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
            F               T+A L + + +   YE    K   +DF D+I   +D        
Sbjct: 1639 FYDYVGGLKDSFSKDRTIAFLKIVEEIYNDYEAYLLKIKKIDFNDMINKASD-------- 1690

Query: 167  AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              ++  +D    +I++DE QDTS  ++ ++R++ +              +  VGD+ QSI
Sbjct: 1691 CIVKNGLDLPYKYIIVDEYQDTSFTRYNLLRNICDSIGA---------KIMVVGDDWQSI 1741

Query: 227  YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            YSF G +     +                    +  ++R++  ++           +   
Sbjct: 1742 YSFSGCDVNIFTKFDNFFD--------VCETRYIEKTYRNSQQLIDASSNFVMKNPDQTR 1793

Query: 287  LSEDSTTTIRH 297
                S+ ++++
Sbjct: 1794 KELKSSKSLKY 1804



 Score = 43.0 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 25/167 (14%)

Query: 503  FFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                I+     + + I   G    D   L +  N      +  +  L +   +L +    
Sbjct: 1824 IIKNIINQSTFKNKKILILGRNNKDIFNLLKNFNVENEYGKRKFEILGD-EDKLRRNKFV 1882

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  +    +   TVH +KGLE   V L++  +                         
Sbjct: 1883 KIVYRESPDVNIEYRTVHQSKGLECDNVILINLKNWK----------------------A 1920

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
              P     + +++ + ++    +  E  RL YV +TR  + + +   
Sbjct: 1921 GFPNKMVDDPVLNFVKRNGDSFSYAEERRLFYVALTRTKNNVYLLAP 1967


>gi|222445021|ref|ZP_03607536.1| hypothetical protein METSMIALI_00638 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434586|gb|EEE41751.1| hypothetical protein METSMIALI_00638 [Methanobrevibacter smithii
           DSM 2375]
          Length = 1288

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 85/251 (33%), Gaps = 26/251 (10%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQK-FTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           + A+ LQ         +   +       +     +  I+  +   +        +    E
Sbjct: 712 RLAEKLQAQGVEFNEIDYREVYRILLENKTIKEWEDFIVLLKTFIELFKGNNYDETKFKE 771

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
           F               T+A L + + +   YE    K   +DF D+I   +D        
Sbjct: 772 FYDYVGGLKDSFSKDRTIAFLKIVEEIYNDYEAYLLKIKKIDFNDMINKASD-------- 823

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             ++  +D    +I++DE QDTS  ++ ++R++ +              +  VGD+ QSI
Sbjct: 824 CIVKNGLDLPYKYIIVDEYQDTSFTRYNLLRNICDSIGA---------KIMVVGDDWQSI 874

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YSF G +     +                    +  ++R++  ++           +   
Sbjct: 875 YSFSGCDVNIFTKFDNFFD--------VCETRYIEKTYRNSQQLIDASSNFVMKNPDQTR 926

Query: 287 LSEDSTTTIRH 297
               S+ ++++
Sbjct: 927 KELKSSKSLKY 937



 Score = 43.0 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 25/167 (14%)

Query: 503  FFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                I+     + + I   G    D   L +  N      +  +  L +   +L +    
Sbjct: 957  IIKNIINQSTFKNKKILILGRNNKDIFNLLKNFNVENEYGKRKFEILGD-EDKLRRNKFV 1015

Query: 561  IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  +    +   TVH +KGLE   V L++  +                         
Sbjct: 1016 KIVYRESPDVNIEYRTVHQSKGLECDNVILINLKNWK----------------------A 1053

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
              P     + +++ + ++    +  E  RL YV +TR  + + +   
Sbjct: 1054 GFPNKMVDDPVLNFVKRNGDSFSYAEERRLFYVALTRTKNNVYLLAP 1100


>gi|259156483|gb|ACV96427.1| UvrD/REP helicase [Vibrio cholerae Mex1]
          Length = 558

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 100/640 (15%), Positives = 191/640 (29%), Gaps = 105/640 (16%)

Query: 27  QVSDINKYVSLSMETGNPTILK-KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ--KN 83
            V        L++E       K +A+ L   +     +       + FL +  T +  K 
Sbjct: 3   AVDAWLPSDGLTLEPNALRAAKEQARCLALTAGPGAGKTEMLAQRADFLLRTGTCRYPKR 62

Query: 84  IITQEIN-KKSPDLKEKLK-----KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
           I+        S +LKE+++     +    F          ++       LT    L+  Y
Sbjct: 63  ILAISFKVDASKNLKERIQRRCGQELASRFDSYTFHAFAKRIIDRFRVVLTGNDALDLDY 122

Query: 138 E--EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
              E K     + F DL+     +LK   V+   R  I Q  + + +DE QD +  Q+E+
Sbjct: 123 SIGERKVTRRQITFHDLVPLAIQILKASTVA---RNAIRQTYSDVFLDEFQDCTDQQYEL 179

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++              +   L AVGD KQ I  + GA         R             
Sbjct: 180 VK---------VAFQGTSIRLTAVGDTKQKIMGWAGALDGIFQTFARDFS---------A 221

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             + +  +FRS   +L + +++  + + A  + +             G+ G V  W+   
Sbjct: 222 VPLNMYRNFRSKPRLLRMQNEIIRVLDPASVMPDHQL---------AGEEGEVFAWQF-- 270

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                                    +A   A  +A  I+  I  +          +   +
Sbjct: 271 ------------------------ENAQGEAEYLADLIAGWIRNEQ---------VPLSE 297

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDD 434
           I VLV   K   L             I          +T   A + ++     +  Q + 
Sbjct: 298 IAVLVS--KQLDLYANHLMVALEVRGIPYRNEQEMQDITVEPAARLVVDYLSCLYGQREP 355

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
            +++ ++              I     E ++      +       K   + + + E    
Sbjct: 356 KAWIRLMN-----------QLIPFADDEVQSSVRQNFQSFFKEQRKIIAMAELLDE---- 400

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
             F    D     L               E    L E +  T    +       +L   L
Sbjct: 401 -PFSGWWDSVCGFLKEIGMETLVALSPDYESHARLGEVVGDTKARIEELLELTPDLPQAL 459

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            ++              VRI+T+H +KGLE     ++   +++F                
Sbjct: 460 TRFSDDQ---------AVRILTIHKSKGLEFDSTIIMAVENEIFFGDQDANRCAFFVGVS 510

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                + +  +K R+  ++   +     T ++   L Y  
Sbjct: 511 RAKRRLVLTYAKQRDRPLNYAKRWDVIRTPQQEY-LQYAA 549


>gi|86144328|ref|ZP_01062660.1| helicase IV [Vibrio sp. MED222]
 gi|85837227|gb|EAQ55339.1| helicase IV [Vibrio sp. MED222]
          Length = 691

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 88/248 (35%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  S     +LT       ++   ++        E+L  S     +++ +   ++ + 
Sbjct: 329 WQKHLSKWPIAYLTGDDELGSHVSNLKLIGWLEKQLEQLNASGLTKKEVQQQLIDHRDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K+   +DF  +I      ++K         K       I+
Sbjct: 389 RLNSELSLCWPCVTAWQKELKEQNHIDFSIMISRATQYVEK--------GKFISPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  +  ++ +L               ++FAVGD+ QSIY F GA+       K
Sbjct: 441 IDEYQDISPDRLALVEALCNQSKAQHQA-----SIFAVGDDWQSIYQFAGADVDLTTGFK 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
              +          +I  L  ++R    + +V ++             +S    + +S  
Sbjct: 496 DRFESS--------TIHHLDTTYRFNNQLGSVANRFVQENPIQLPKELNSFKQQKQKSVY 547

Query: 302 IGQVGTVQ 309
                 V+
Sbjct: 548 SASSKEVE 555



 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/382 (13%), Positives = 104/382 (27%), Gaps = 50/382 (13%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L    S   L   +   +  +  +       ++++I  +D   L  +   
Sbjct: 337 PIAYLTGDDELGSHVSNLKLIGWLEKQLEQLNASGLTKKEVQQQLIDHRDYTRLNSELSL 396

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             P +T   + LK    I             ++           +           D L+
Sbjct: 397 CWPCVTAWQKELKEQNHIDFSIMISRATQYVEKGKFISPWKFIMIDEYQDI---SPDRLA 453

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-----------HVI 485
            V  L +      +  IF +                       +F+              
Sbjct: 454 LVEALCNQSKAQHQASIFAVGDDWQSIYQFAGADVDLTTGFKDRFESSTIHHLDTTYRFN 513

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFLNFTLRNEQNSY 544
             +  + +     +P      +   K+ +Q+   S    EV  +LD+           S 
Sbjct: 514 NQLGSVANRFVQENPIQLPKELNSFKQQKQKSVYSASSKEVEKILDQINRQAKGKANKSV 573

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             L    +   +              ++  MT H +KG E+  V ++      F      
Sbjct: 574 MLLGR--NHYHKPELLEDWKKIYTSIDISFMTCHASKGKEADFVIILCVDEGQFP----- 626

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                K + +I   L +        E  RL YV MTRA +++ I
Sbjct: 627 -------------------AKKKQLHIDGALTESSDVFPYAEERRLFYVAMTRAKEKVWI 667

Query: 665 CKHSNTSNEKKSNQRTWYDMVY 686
               + S   +    +   +V 
Sbjct: 668 THSGDGSGFVQELHGSDCPVVR 689


>gi|257092005|ref|YP_003165646.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257044529|gb|ACV33717.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1741

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/333 (17%), Positives = 121/333 (36%), Gaps = 36/333 (10%)

Query: 32   NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI------I 85
            ++   L+ +T   +     + L    Q + + +     +   L    + +  +       
Sbjct: 1079 DRDKELARQTTPQSWHDIVEVLNNRQQREIVADERESTNVLVLAGPGSGKTRVLVHRIAY 1138

Query: 86   TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS----TLASLTLAKYLNAHYEEAK 141
               + +++P     L  ++   ++IR R        +     L    LA  L        
Sbjct: 1139 LIRVRRENPHGILALAYNRHAAVQIRQRLGELIGDDARGVAVLTLHALAMRLAGA--SLA 1196

Query: 142  KKNCVLD---FEDLIINTNDLLKK----RDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             +N   D   F+D+I    +LLK      + +   R ++      IL+DE QD +  Q+E
Sbjct: 1197 TQNGGTDGDLFKDIIDQAVNLLKGKDLPPEEADQQRERLLVGFRWILVDEYQDIAPEQYE 1256

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            +I +L       ++       LFAVGD+ Q+IY+F GA  + + R +     + +     
Sbjct: 1257 LISALAGRTRPDEDGR---INLFAVGDDDQNIYAFKGASVEFIRRFEADYAAKPS----- 1308

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                 L  ++RSTA+I+   +++ +   N           I   ++R  Q    + W  +
Sbjct: 1309 ----FLTDNYRSTANIIEAANRLIAPAANRM----KQAHPIHIDAARKAQAAGGE-WTSI 1359

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                  +             +L   +    +A+
Sbjct: 1360 DPVGRGRVQILPAGDNERTQALAVITEFERMAQ 1392


>gi|253577471|ref|ZP_04854786.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843171|gb|EES71204.1| UvrD/REP helicase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 584

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 91/558 (16%), Positives = 163/558 (29%), Gaps = 133/558 (23%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y+   K   ++D++ ++  +  +LK       I   +      ILIDE QDT  +Q
Sbjct: 153 LLKEYDHRLKNERLVDYDLILYYSYKILKNNPS---IAKNLSTIFRWILIDEYQDTQELQ 209

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +I  + +          +   L  VGD  Q IY   G   K     +          G
Sbjct: 210 YLIIGEIIK-------VGRNETKLLIVGDPNQGIYQTLGGVAKTKTEIEDCIG------G 256

Query: 253 QKFSIIELPLSFRSTADILTV--VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            + S   L  ++RST  I+ V    ++F  P  A+G ++D+T+ I               
Sbjct: 257 YRISEKNLTGNYRSTQQIIDVYKNFQIFGDPIEAKGDNKDNTSLISF------------- 303

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                       E     LA  I  TI ++            R 
Sbjct: 304 --------------------------ESEILVGNLAHFIKDTIVDLHNK---------RG 328

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I  K+I V+  +      +    + L+ +  +   G       D+     L  L  F+ S
Sbjct: 329 IPYKEIAVIAPQWMPLIHMARTIKQLEPNIPLDAAGLSPLCKDDNNLFYHLAKL--FLSS 386

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
              D                  + ++    +  E++ E I + +   +   Q ++K  + 
Sbjct: 387 PAPD----------------KVLLRMRWANNLLESLLEKIPQISESNL-SLQKILKITNS 429

Query: 491 LIHIAQ--FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
               +        + F              S    E    L EF    +R +  +     
Sbjct: 430 FSSSSVLGIEYLKESFAFFFNVLNIDINLYSNVKLE----LQEFEEKCIRRQNRNGIG-- 483

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                      ++ +   A    V  +T H  KGLE   V           H        
Sbjct: 484 --------DSISVYKNGFAKSGGVNFITAHKCKGLEYDTVIGFCLLWGYLPH-------- 527

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                   +++         E   +LLYV  +RA + LI+   +
Sbjct: 528 -----------------------WNNIYSREIDEN-EISKKLLYVLSSRARNNLILIAET 563

Query: 669 NTSNEKKSNQRTWYDMVY 686
                + +       +  
Sbjct: 564 GRRTNRGTPYNANRHLFE 581


>gi|296118827|ref|ZP_06837403.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM
            20306]
 gi|295968316|gb|EFG81565.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM
            20306]
          Length = 1057

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 109/1000 (10%), Positives = 272/1000 (27%), Gaps = 121/1000 (12%)

Query: 4    RFGLSLNE---SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
            R  ++  +   S   I + +  L  F +  ++    + + TG        + LQ      
Sbjct: 86   RLAVANGQEFVSESAIVRSVHSLA-FALLRLDSDEEIRLITGAEQDAVIRELLQGHVDNN 144

Query: 61   CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
               +  + +                       +  L++ L ++ +   +           
Sbjct: 145  -AGQWPADIRPAL--------------GYVGFARQLRDFLLRAIER--QQTPDSLIALGK 187

Query: 121  KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            + +    T A +    YE+    + +  +    + T  LL++    +        +   I
Sbjct: 188  QYSQPMWTAAGHFLREYEQVMALSGMHSYSAAELVTQVLLREHLTQS-------HQWETI 240

Query: 181  LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            ++DE Q       E+IR L +          + + +   GD  Q++++F GA    +   
Sbjct: 241  IVDEAQLLDPTSGELIRRLAD----------TAKLVVIGGDPNQAVFAFRGATTDFLDTF 290

Query: 241  --KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +   +  A     + + + +  S R+  D+L                   +   I   
Sbjct: 291  PAQHRIELPAPLRTPEPACVSIVDSERTQRDVLA------DFIRRRHLDDGVAWKDIACI 344

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                G +G V+                         +    +  ++        +  ++ 
Sbjct: 345  VRSSGDLGPVRRTLLAAGVPVHINPTDVVLSEQRLVAATLLAVRALENPLPNKELEELLT 404

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                   G    +  + ++  +R+         + R +     I     +     +   +
Sbjct: 405  G----PIGGADPVGLRRLIRALRRWNPEARGMDMLRDILEHEVIEDSLLEVLNKYEKSTL 460

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            + ++ +                +   ++  +      +  +   +          A+  +
Sbjct: 461  ERIIGILSAGREVLQKYGSPEEVLWAIWAKT-----DLANRLRNSSLRGGATGSQADRDL 515

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGA---KKGRQQFISRFGNEVIDVLDEFLNF 535
                 +     +            F   I         R +  +    + + +L      
Sbjct: 516  DAMMALFDAAGDYSERRPGADLAAFIDHITEQVLPTGVRDRRTA--VPDAVSILTAHGAV 573

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM-------TVHTAKGLESPVV 588
                +  +    QE              A     + V             + +  E   +
Sbjct: 574  GREFDSVAVVGAQE-SQWPALGETGTIFAQEELIDLVDRGIDPSIPVNSISDRLHEERRL 632

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            F V T       + +      P  ++      +I +  +R     +L + L++  ++E  
Sbjct: 633  FHVATTRHT--ARMLLVAVDNPDGDEVAEPSRFIDEFANRPGHHRNLPELLQRLERQEAF 690

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            R           + ++ +                  +     +   V            +
Sbjct: 691  R-----------KQLLAREMGLEPPATPEAHEVDKEIDPLQVSVLSVSAFIAQMRTVVGD 739

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
              A E +            E      D  +         +  +     L+PS I+   K 
Sbjct: 740  PEATESARAQAARQLARLAEEGVPGADPSQWWATQTVAEERVLTTNPRLSPSRIEALLKC 799

Query: 769  NLESLLSDNQ-------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
             L ++LSD            RG + H  ++ I    + +     T    +  +  P  + 
Sbjct: 800  PLNAMLSDAADNNSDKYHMVRGNLAHAYMEAIGRGADEELARRETVAAFEQIQTSPTWKR 859

Query: 822  KNLLLSITRLLENPMMTTAMS-CDSYSEVSVSGKINCP-KKDIIISGRIDQISI------ 873
                     LL+           D+   V V  +++   +  + +SG ID++        
Sbjct: 860  PQERADFEGLLQ-RTYQWIQETRDALELVDVEVRVSVETQPGVRVSGYIDRLERARAEEG 918

Query: 874  ---SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK-----------DSYPNK- 918
                +  + + + KT  + P + E        QL  Y+ +L                 + 
Sbjct: 919  ADTEEGGLRVIDLKTGSYKPSDEETSQ---HPQLLAYQLVLAHGALRQDEQGTQVVSGED 975

Query: 919  -SLV--CLLIY--VSEPKVFIIPQNK-LNKAFAEISTKIP 952
              +     L++      K+    Q +  +   AE + K+P
Sbjct: 976  GEVRDGATLVFPGTDTVKIATAEQARKEDAELAEFAEKLP 1015


>gi|148643480|ref|YP_001273993.1| UvrD/Rep family helicase [Methanobrevibacter smithii ATCC 35061]
 gi|148552497|gb|ABQ87625.1| helicase, UvrD/REP family [Methanobrevibacter smithii ATCC 35061]
          Length = 661

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 85/251 (33%), Gaps = 26/251 (10%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQK-FTPQKNIITQEINKKSPDLKEKLKKSQDE 106
           + A+ LQ         E   +       +     +  I+  +   +        +    E
Sbjct: 85  RLAEKLQAQGVEFNEIEYREVYRILLENKTIKEWEDFIVLLKTFIELFKGNNYDETKFKE 144

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
           F               T+A L + + +   YE    K   +DF D+I   +D        
Sbjct: 145 FYDYVGGLKDSFSKDRTIAFLKIVEEIYNDYEAYLLKIKKIDFNDMINKASD-------- 196

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             ++  +D    +I++DE QDTS  ++ ++R++ +              +  VGD+ QSI
Sbjct: 197 CIVKNGLDLPYKYIIVDEYQDTSFTRYNLLRNICDSIGA---------KIMVVGDDWQSI 247

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YSF G +     +                    +  ++R++  ++           +   
Sbjct: 248 YSFSGCDVNIFTKFDNFFD--------VCETRYIEKTYRNSQQLIDASSNFVMKNPDQTR 299

Query: 287 LSEDSTTTIRH 297
               S+ ++++
Sbjct: 300 KELKSSKSLKY 310



 Score = 43.0 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 25/167 (14%)

Query: 503 FFTLILGAKKGRQQFISRFGNEVID--VLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
               I+     + + I   G    D   L +  N      +  +  L +   +L +    
Sbjct: 330 IIKNIINQSTFKNKKILILGRNNKDIFNLLKNFNVENEYGKRKFEILGD-EDKLRRNKFV 388

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                 +    +   TVH +KGLE   V L++  +                         
Sbjct: 389 KIVYRESPDVNIEYRTVHQSKGLECDNVILINLKNWK----------------------A 426

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
             P     + +++ + ++    +  E  RL YV +TR  + + +   
Sbjct: 427 GFPNKMVDDPVLNFVKRNGDSFSYAEERRLFYVALTRTKNNVYLLAP 473


>gi|153838730|ref|ZP_01991397.1| helicase IV [Vibrio parahaemolyticus AQ3810]
 gi|260901447|ref|ZP_05909842.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus AQ4037]
 gi|149747855|gb|EDM58735.1| helicase IV [Vibrio parahaemolyticus AQ3810]
 gi|308108532|gb|EFO46072.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 689

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 85/248 (34%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        +    ++          L        +++++   ++ + 
Sbjct: 329 WQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDSQLSHLAAVGLTKKQVQEKLVDHQDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L     + +++  K++  +DF  +I    D + K         K       ++
Sbjct: 389 RLNSELALCWPCFSAWQKMLKESNQVDFPTMISRATDYVNK--------GKFVSPWRFVM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +  +I +L E             TLFAVGD+ Q+IY F GA+   +   K
Sbjct: 441 VDEYQDISPDRLALIEALCE-----STEKQPGATLFAVGDDWQAIYQFAGADVDLITGFK 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         ++  L  ++R    I  V +       +    + +S    + +S  
Sbjct: 496 ERFAHS--------TVHHLDTTYRFNNQIGDVANTFVQQNPSQLTKTLNSHKQRKQKSVH 547

Query: 302 IGQVGTVQ 309
                 V+
Sbjct: 548 TAPSNQVE 555



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 105/378 (27%), Gaps = 46/378 (12%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +     +    ++    D L   S    L   +   +S++          +++++
Sbjct: 323 PTNFKRWQKHLDKWPIAYLKGDDELGSHSENPKLIAWLDSQLSHLAAVGLTKKQVQEKLV 382

Query: 372 QAKDILVLVRKRK-DTPLITFLTRFLKNDYKISV-----VGNDRFILTDHLAIKDLMALG 425
             +D   L  +     P  +   + LK   ++          D       ++    + + 
Sbjct: 383 DHQDYTRLNSELALCWPCFSAWQKMLKESNQVDFPTMISRATDYVNKGKFVSPWRFVMVD 442

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ--- 482
            +     D L+ +  L           +F +                       +F    
Sbjct: 443 EYQDISPDRLALIEALCESTEKQPGATLFAVGDDWQAIYQFAGADVDLITGFKERFAHST 502

Query: 483 --------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFL 533
                        I ++ +     +P      +   K+ +Q+   +   N+V  +LD+  
Sbjct: 503 VHHLDTTYRFNNQIGDVANTFVQQNPSQLTKTLNSHKQRKQKSVHTAPSNQVEKILDQLN 562

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                  Q     L       +            N + +R MT H +KG E+  V ++  
Sbjct: 563 QQAK---QTKSVLLLGRNHYHKPDLYDDWLRRFPNLD-IRFMTCHASKGREADFVIILAV 618

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               F                           K + +I   L +   K    E  RL YV
Sbjct: 619 DEGQFP------------------------AKKKQIHIDGALTESKDKFPYAEERRLFYV 654

Query: 654 GMTRASDQLIICKHSNTS 671
            +TRA +++ I      S
Sbjct: 655 AITRAKEKVWITHTGAGS 672


>gi|240169962|ref|ZP_04748621.1| hypothetical protein MkanA1_11664 [Mycobacterium kansasii ATCC
           12478]
          Length = 699

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 116/417 (27%), Gaps = 67/417 (16%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL-AKYLNAHYEEAKKKNC 145
           Q       DL  +++ ++   I   D  +     +            + + YE  K ++ 
Sbjct: 138 QASTDDVRDLAGEIEWAKASLIGPEDYPSEVAAARRDTPLDAARIAAVYSEYESLKVRDD 197

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            +   D            +  A +  +        ++DE QD + +Q  V+ +   D   
Sbjct: 198 SVTLLDFDDLLLHTAAAIENDAAVAEEFRDRYRCFVVDEYQDVTPLQQRVLSAWLGD--- 254

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                     L  VGD  Q+IYSF GA P+ +L   R             +++ L   +R
Sbjct: 255 -------RDDLTVVGDANQTIYSFTGASPRFLLEFSRSFP--------DATVVRLERDYR 299

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           ST  ++++ ++V  +          + + +R    R                        
Sbjct: 300 STPQVVSLANRVIEVARGR-----VAGSKLRLSGQREPGPAP------------------ 336

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                    S  +       A  +  +I  +I + T             +I +L R    
Sbjct: 337 ---------SFQEYPDEPAEAAAVTASIGRLIESGTA----------PSEIAILYRVNAQ 377

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
           + +             I+          D   IK  +   +    +  D +   +++  L
Sbjct: 378 SEVYEEALTE----AGIAYQVRGGEGFFDRQEIKQALVALQRAADRGTDAALPDVVRGVL 433

Query: 446 --FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                +  +      +                        +   + EL   A    P
Sbjct: 434 EPLGLTAHEPAGARARERWEGLTALAQLVDDEVAQRPHLQLPGLLAELRARADARHP 490



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 75/331 (22%), Gaps = 38/331 (11%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               E    Y+           + +  +  +          +  D    +L         
Sbjct: 383 EALTEAGIAYQVRGGEGFFDRQEIKQALVALQRAADRGTDAALPDVVRGVLEPLGLTAHE 442

Query: 518 -ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                  E  + L            Q  +  L  L++EL                 V + 
Sbjct: 443 PAGARARERWEGLTALAQLVDDEVAQRPHLQLPGLLAELRARADARHPPVVQG---VTLA 499

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H AKGLE   VFLV          H                                L
Sbjct: 500 SLHAAKGLEWDAVFLVGLADGTLPISH-------------------------------AL 528

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                    EE  RLLYVG+TRA   L +           +      + + +      + 
Sbjct: 529 AHGPDSEPVEEERRLLYVGITRARVHLALSWALARAPGGRQSRKPSRFLNGIAPQTRAEP 588

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
              K +   +  +      E  T                  +     K     I  + N 
Sbjct: 589 GAGKARRNRTTARCRVCNKELITPAAVMLRRCETCAGDVDEELLLQLKSWRLNIAKEQNV 648

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
           P  +  +         +     +      G+
Sbjct: 649 PAYVVFTDNTLIAIAEMRPDDDEALIAIPGI 679


>gi|85716703|ref|ZP_01047671.1| ATP-dependent DNA helicase [Nitrobacter sp. Nb-311A]
 gi|85696421|gb|EAQ34311.1| ATP-dependent DNA helicase [Nitrobacter sp. Nb-311A]
          Length = 591

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 79/556 (14%), Positives = 164/556 (29%), Gaps = 140/556 (25%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            L   +   Y +  ++   +DF ++I  +  LL++      I   +  +   IL+DE QD
Sbjct: 160 ALTPEVATAYWKRIREAGFVDFANIIYYSLLLLRR---RPEILSYVSAKFAWILVDEFQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +Q E++  +                   VGD  QSI+ F GA P    +       R
Sbjct: 217 TTDLQVEILALIAGK---------GRTRFLLVGDPCQSIFRFAGARPDLAEQFAGRITAR 267

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                      +L  +FRS++ I+   + ++                             
Sbjct: 268 TDK--------QLSGNFRSSSPIIAHANMLYPRT-------------------------- 293

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                 + +   ++   +Q  W     +    +   + A      I  +           
Sbjct: 294 ----PPMTAVGRARKYAEQPVWQHGASAFTVITDYFLPA------IEAL----------- 332

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGR 426
              I   +  +L         +    R     Y +S+VG   R    +         +  
Sbjct: 333 --EIPMGEAAILAPTWYSLFPLGRRLRE----YGVSIVGPGARPYRRNRQFAPLAEQVCG 386

Query: 427 FILSQEDDLS--FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
           +++    D        L + L + +    F I + R                   +    
Sbjct: 387 YLMEPRPDAIAGIERTLFNTLLDVTGRPHFDIFSYRGRVIVF-------------RLLDH 433

Query: 485 IKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            + +H++    IA   +    F+ +L      +++++    +V  +  E           
Sbjct: 434 ARRLHQIHMGGIAWLEAAAAAFSQVLIE----KEYLTSGDKDVFAISVE----------E 479

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
             + ++    +L          +++    +++ T+H AKG E   V ++D          
Sbjct: 480 MKTDMRNNRVDLANLTIDDLGIYASPDAALKLATLHNAKGREYMAVAMIDLHEGRIP--- 536

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                             +       EE  RL YVG+TRA   L
Sbjct: 537 --------------------------------FYQARSAEDIEEAKRLFYVGVTRAKRFL 564

Query: 663 IICKHSNTSNEKKSNQ 678
           +    ++ S    +  
Sbjct: 565 LYVTDASDSRNGPTRF 580


>gi|90579044|ref|ZP_01234854.1| hypothetical helicase IV [Vibrio angustum S14]
 gi|90439877|gb|EAS65058.1| hypothetical helicase IV [Vibrio angustum S14]
          Length = 693

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 96/284 (33%), Gaps = 23/284 (8%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
            +      +  ++      +            +   ++S     +   +       +++ 
Sbjct: 280 QIIADVEKEKPNVAGVAIDARVRSAWIARMLIEQWNKSSSASKWQRHLTQWRVPGFSKEN 339

Query: 79  TPQKNIITQEINK---KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           T ++    +++     +  +L  +   S++  I+     N   M     + L L      
Sbjct: 340 TMEQQAENEQLQAWVWRHIELLGQSTLSKEALIEEIQNNNNPAMRPRMKSELELLWPCYQ 399

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    +DF  +I      +K+         K       I++DE QD S  +  +
Sbjct: 400 AYQQYLKSKKQIDFNSMIDVATQYVKE--------GKFISPWRFIMVDEYQDISPQRLAL 451

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I +L      GK+T     TLFAVGD+ Q+IY F GA+       +              
Sbjct: 452 IEALCGQKIEGKST----PTLFAVGDDWQAIYRFAGADVNLTTDFEGRF--------GSS 499

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            I EL  ++R  + I  V +       +       S T    ++
Sbjct: 500 HITELSTTYRFNSMIGEVANLFIQQNPSQIKKQLTSFTKQSKKA 543



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 26/191 (13%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                I E+ ++    +P      +    K  ++ ++   ++++  L +        +  
Sbjct: 509 RFNSMIGEVANLFIQQNPSQIKKQLTSFTKQSKKAVTLLDSDLM--LQDLTRLAKLYDNK 566

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
             S +    +  ++               +  MT H +KG E+  VF+VD    +F    
Sbjct: 567 ETSVMILGRNNKQKPAKFEDWKAQWPQLNLVYMTCHASKGREADYVFIVDVNKGIFPSPD 626

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                       + + +    +  T  E  RL YV +TRA   +
Sbjct: 627 R------------------------ETGLAAVMQPRTENYTDAEERRLFYVALTRARKHV 662

Query: 663 IICKHSNTSNE 673
            +C  S+ ++ 
Sbjct: 663 WVCAGSHNTSS 673


>gi|239944121|ref|ZP_04696058.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           15998]
          Length = 423

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 89/306 (29%), Gaps = 37/306 (12%)

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM------------VYDSF 689
           +   E  RL YV  TRA D+L++      +++     R   ++               + 
Sbjct: 28  ALLAEERRLFYVAATRARDRLVVTAVKAPADDGDQPSRFLTELGVEPRDVTGRPRRPLAV 87

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
                  +    +    D                 + E               L  P ++
Sbjct: 88  AALVAELRATTVDPAASDALREAAAHRLARLAALTDDEGQPLVPAAHPYRWWGLEEPTRS 147

Query: 750 DINEPYI-----LNPSTIDTKGK---------TNLESLLSDNQTFNRGLIIHKLL-QVIF 794
            +          L+PS +D               +++          G ++H L  +V  
Sbjct: 148 AVPLRDRDQALSLSPSALDQLANTCTLQWFLGREVKADAPATAAQGFGNVVHVLADEVAS 207

Query: 795 TLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
                     +            +A     +E      ++ R L   ++       + SE
Sbjct: 208 GRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQARAALERFLHWHVLDRGGRTPTASE 267

Query: 849 VSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                 +   +  + I G +D++    +   ++ ++KT    P + E        QL++Y
Sbjct: 268 HDFDVTLEAGEYAVRIRGSMDRVEEDAEGRAYVVDFKTGKGAPTKDEVAA---HPQLAVY 324

Query: 908 EKILKD 913
           +  +++
Sbjct: 325 QLAVRE 330


>gi|160877186|ref|YP_001556502.1| UvrD/REP helicase [Shewanella baltica OS195]
 gi|160862708|gb|ABX51242.1| UvrD/REP helicase [Shewanella baltica OS195]
 gi|315269390|gb|ADT96243.1| UvrD/REP helicase [Shewanella baltica OS678]
          Length = 996

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 84/237 (35%), Gaps = 19/237 (8%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           E+ K    L    K +  +   +   F      + T  +  L + +   YE+    N  +
Sbjct: 512 ELAKMFSQLIGLYKAACLDEHGLEGVFARAADAQQTRKAFELLEPIITRYEQHLAINGDI 571

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DFED+I      L+        R +       I++DE QD S  +  ++R+L +      
Sbjct: 572 DFEDMIGKALTYLQ--------RGQFISPWRFIMVDEFQDISEPRARLVRALRD---SSA 620

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
               +  +LF VGD+ Q+IY F GA+     +                +  +L L+FR  
Sbjct: 621 PHSKTQASLFCVGDDWQAIYRFSGADVSLTTQFTHYF--------GPTARNDLDLTFRFN 672

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           + I  V  +  +           S   +   +  I + G  +   +     ++    
Sbjct: 673 SSIGQVATQFVTQNPTQLSKDIRSLKQVASPAVSILRRGENEPPSKDEPSPNALEQA 729



 Score = 44.5 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 22/96 (22%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++   + H +KG E+  V ++   +                           P  K    
Sbjct: 777 KIECQSFHASKGKEADYVVIMGMKTG----------------------MHGFPSMKITPP 814

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           I+   +   +     E  RL YV +TRA  +  +  
Sbjct: 815 ILDAFLPKTEAFEFAEERRLFYVALTRAKHRAYVIA 850


>gi|296185027|ref|ZP_06853437.1| hypothetical protein CLCAR_0437 [Clostridium carboxidivorans P7]
 gi|296049861|gb|EFG89285.1| hypothetical protein CLCAR_0437 [Clostridium carboxidivorans P7]
          Length = 363

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 120/375 (32%), Gaps = 64/375 (17%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
           S     A  I  TI N+                 +D  VL R   +   I      L   
Sbjct: 2   SDERQQALSICKTIENLCED---------NSYNLEDFAVLYRTNLENRSIVD----LMLK 48

Query: 400 YKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
            +I     D+     +H   +DL+A  +  L   D  SF  ++  P    S+  I K+  
Sbjct: 49  KEIPFKILDKQYNFFEHFVCRDLIAYLKLSLDITDKESFGRVINKPFRYVSKVHIEKVKK 108

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ--- 515
                E+ ++ + +  +  I + ++ ++ +   I      S  D    I           
Sbjct: 109 -NINKESCFKILMEIEDLPIFQIKN-LERLENDILKLNKMSLRDALNFITKDLGYYDYIN 166

Query: 516 QFISRFGNEVI---DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
           ++  R   E     DV++EF             S+   ++ +E     +K     +   V
Sbjct: 167 EYSERLKMESRELKDVIEEFKASASDY-----GSIIPFLAHIEDVEEKLKNKSKEDSG-V 220

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            + T+H  KG+E   VF+++    V  H +                              
Sbjct: 221 ILSTIHGVKGMEFKNVFIINCNEGVIPHINSIP--------------------------- 253

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                       EE  RL YVG+TRA D L +   +    +     R   +        +
Sbjct: 254 ---------KNVEEERRLFYVGVTRAIDNLTLYSTNMFKGKSAHMSRFIEESGVYKSIRE 304

Query: 693 ERVKKIKLTNSINKD 707
           E  +K+K   +I  +
Sbjct: 305 ESTEKLKGMFNIGDE 319


>gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
 gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748]
          Length = 862

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 130/388 (33%), Gaps = 70/388 (18%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
              + ++        ++L+K Q   I+ +       ++      L       A Y+E   
Sbjct: 145 GFYSDDLVGDYKRTIDRLQKEQRPAIEQQFSSFGNVLYSELHDFLNHGHEWIAAYDENLA 204

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LDF DLI   + L +       +R +     ++I +DE+QDT +++++V+  L E 
Sbjct: 205 SVHGLDFTDLICGVHRLFQDP----VVRERWSSRYSYISVDEMQDTGVLEYKVLEMLWE- 259

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +   GD  Q+IY + G++P    R  +          +   II    
Sbjct: 260 ----------GNHVLLCGDYFQTIYEWRGSDP---FRLLKQFDADF----KPLKIIF-YE 301

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS                        +  T+  ++ +      V      + + +S+ 
Sbjct: 302 NYRS----------------------NWTLFTMAFKTLQNMFPDLVGSIYTELPRANSER 339

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             +        +S  +        R I   I  +               +  +I VLVR 
Sbjct: 340 KGKPVLIKGCKNSYLEG-------RYIYEAICAL--------------PKDANIGVLVRD 378

Query: 383 RKDTPLITFLTRFLKNDY----KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
            K    ++     L N+     +   +  D F       IKD+MA  + +++  D +S  
Sbjct: 379 NKKAQRLSDSFERLNNEKAEDERRHFMIIDEFKFFRRQEIKDVMAYFKLLMNPNDSVSAK 438

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETV 466
            ++K  +    +  I  I +       +
Sbjct: 439 RIIKRYVAGIGDARIAAIESPETRQVGL 466



 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 63/224 (28%), Gaps = 39/224 (17%)

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
           N   + F ++   +  L   A    P      I+      + + S      ++ + +   
Sbjct: 672 NKYKAAFTNIASQMATLRRKAYTELPTQLLAYIMNQMGVLEYYKSHGEVAKVEHIRDLYR 731

Query: 535 FTLRNEQ--NSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFL 590
              + +      + L  L   L+    T         N + + I+T+H AKG E   VFL
Sbjct: 732 IMEKLDAAYEGPAGLARLNQILQMAALTAGEPAQQVRNEDRIPIITIHQAKGSEFDHVFL 791

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F                                        + +  ++E  RL
Sbjct: 792 AGLNEGTFPSPF-----------------------------------AIAEGREDEEKRL 816

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
            YV +TR   +L I         +     +  + +       ER
Sbjct: 817 FYVAITRPKQELTITFEQTNIRGRAVQPSSLLNYMPRDPELVER 860


>gi|218676239|ref|YP_002395058.1| DNA helicase IV [Vibrio splendidus LGP32]
 gi|218324507|emb|CAV25975.1| Helicase IV [Vibrio splendidus LGP32]
          Length = 691

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 88/248 (35%), Gaps = 21/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  S     +LT       ++   ++        E+L  S     +++ +   ++ + 
Sbjct: 329 WQKHLSKWPIAYLTGDDELGSHVSNLKLIGWLEKQLEQLNASGLTKKEVQQQLIDHRDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       +++  K+   +DF  +I      ++K         K       I+
Sbjct: 389 RLNSELSLCWPCVTAWQKELKEQNHIDFSIMISRATQYVEK--------GKFISPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  +  ++ +L               ++FAVGD+ QSIY F GA+       K
Sbjct: 441 IDEYQDISPDRLALVEALCNQSKAQHQA-----SIFAVGDDWQSIYQFAGADVDLTTGFK 495

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
              +          +I  L  ++R    + +V ++             +S    + +S  
Sbjct: 496 DRFESS--------TIHHLDTTYRFNNQLGSVANRFVQENPIQLPKELNSFKQQKQKSVY 547

Query: 302 IGQVGTVQ 309
                 V+
Sbjct: 548 SAPSKEVE 555



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/382 (13%), Positives = 105/382 (27%), Gaps = 50/382 (13%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++ +  D L    S   L   +   +  +  +       ++++I  +D   L  +   
Sbjct: 337 PIAYLTGDDELGSHVSNLKLIGWLEKQLEQLNASGLTKKEVQQQLIDHRDYTRLNSELSL 396

Query: 385 DTPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             P +T   + LK    I             ++           +           D L+
Sbjct: 397 CWPCVTAWQKELKEQNHIDFSIMISRATQYVEKGKFISPWKFIMIDEYQDI---SPDRLA 453

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-----------HVI 485
            V  L +      +  IF +                       +F+              
Sbjct: 454 LVEALCNQSKAQHQASIFAVGDDWQSIYQFAGADVDLTTGFKDRFESSTIHHLDTTYRFN 513

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEFLNFTLRNEQNSY 544
             +  + +     +P      +   K+ +Q+   S    EV  +LD+           S 
Sbjct: 514 NQLGSVANRFVQENPIQLPKELNSFKQQKQKSVYSAPSKEVEKILDQINRQAKGKANKSV 573

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             L    +   +              ++  MT H +KG E+  V ++      F      
Sbjct: 574 MLLGR--NHYHKPELLEDWKKIYTSIDISFMTCHASKGKEADFVIILCVDEGQFP----- 626

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                K + +I   L +        E  RL YV MTRA +++ I
Sbjct: 627 -------------------AKKKQLHIDGALTESSDMFPYAEERRLFYVAMTRAKEKVWI 667

Query: 665 CKHSNTSNEKKSNQRTWYDMVY 686
               + S   +    + Y +V 
Sbjct: 668 THSGDGSGFVQELHGSDYPVVR 689


>gi|254361371|ref|ZP_04977513.1| possible helicase [Mannheimia haemolytica PHL213]
 gi|153092872|gb|EDN73909.1| possible helicase [Mannheimia haemolytica PHL213]
          Length = 926

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 128/375 (34%), Gaps = 51/375 (13%)

Query: 5   FGLS-LNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILK------KAQTLQQA 56
           FG+     +   I    +     +  +++    +  +ET +   ++        Q + + 
Sbjct: 417 FGIDRQGRTRADINAQEYNANIQRKRELHAEHNTTLLETYHYNWVENTLYKRLEQLMNEQ 476

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                 + +  +L +   +  F   KN   + +        + ++  + ++ +I  R   
Sbjct: 477 FIPLKPKSQQEILDALNESGIFKENKNRYLKCL--------QAIRTERLDYQQILKRLTD 528

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            K+  +   + TL   ++  Y +  +    +DF+D+I+    L+K  +           +
Sbjct: 529 AKIVYAKEYA-TLLMRIHDAYVKELRSANEIDFDDMILLATQLVKTGEFKP--------K 579

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             HIL+DE QD S+ + E+++ +         T         VGD+ QSIY F G + + 
Sbjct: 580 WKHILVDEFQDISMARLELLKEIY--------TKGPRPIWTVVGDDWQSIYRFSGGKLEV 631

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
             R          +     ++ +L  ++R    I     +           +  + T + 
Sbjct: 632 TTRF--------NDMVGSHTLSKLEKTYRYNNSIADTAGQFIMQNPEQYQKNVVTHTKVA 683

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                      V L++  V + +          ++    + Q++  + +A  I      +
Sbjct: 684 --------DSCVHLYDSHVVKDEKSEANISLKASAILKLIRQKAPEATVA--ILARYRYL 733

Query: 357 IGTDTIFSNGKKRVI 371
           +         K    
Sbjct: 734 LEDAKSVIKDKNVKF 748



 Score = 43.4 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 29/163 (17%)

Query: 513 GRQQFISRFGNEVIDVLDE--FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                +    +E    L     L    +    +  ++      L +   ++ +       
Sbjct: 690 YDSHVVKDEKSEANISLKASAILKLIRQKAPEATVAILARYRYLLEDAKSVIKDK----- 744

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V+  T H +KGLE+    L+                            +  P       
Sbjct: 745 NVKFWTFHGSKGLEADYCILLGFFQGK----------------------VGFPNQNKEEA 782

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           +V  L+  L      E  RL YV +TRA  +  +   +N  +E
Sbjct: 783 VVEALLPMLDSFPHSEERRLFYVALTRAKKESYLIADANAPSE 825


>gi|315926864|gb|EFV06233.1| ATP-dependent DNA helicase PcrA [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 110

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 18/104 (17%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            N+I +DE QDT+ +Q++++++L                +  VGD+ QSIYS+ GA+ + 
Sbjct: 25  YNYITVDEYQDTNTLQYKILKNLCCM----------HENITVVGDDDQSIYSWRGAKIEN 74

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           +L  +   +           +++L  ++RS   IL   + + S 
Sbjct: 75  ILNFQNDFKN--------VKLVKLEQNYRSVGTILQAANNLISH 110


>gi|269987048|gb|EEZ93323.1| UvrD/REP helicase [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 651

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 69/540 (12%), Positives = 157/540 (29%), Gaps = 122/540 (22%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE+ K +   +D+ DL+                   + +   ++L+DE+QD + ++ 
Sbjct: 133 FQDYEKEKGEKR-IDYNDLLKR----------FQIEYDPLKKHYKYVLVDELQDLNDVEA 181

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           ++ R L                LF VGD KQSI+ F G   K     +++          
Sbjct: 182 DIARLL-------------GDYLFLVGDRKQSIFGFQGGSLKNFAEFQKL---------S 219

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               +   L++RS ++IL    + F         + D   +      +  +     + + 
Sbjct: 220 NLEQLTKGLNYRSYSEILEYSKQYF------LKKTHDKNDSNELEDFKSNKGQGGSVKQL 273

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           + +  +        +     D   Q  S                                
Sbjct: 274 IGNNTED------IALKLAIDLASQRKST------------------------------- 296

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
               ++ R       I+ +         +         ++       ++   + I +  D
Sbjct: 297 ---AIITRTNDQIIGISRILDA----KNVKYTTTASASVSTRAKNS-IIDYLKGIFN-AD 347

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           +   +  L +P    S    F+I  +  + E     +++ A     +       I  +  
Sbjct: 348 EKDVLKALFTPFSGVSLKMAFQIEEKYRKKEININEVKRLAKPFFDRKAAAELNIFNINK 407

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
           +          ++ L                +++ ++++++       N   S  +++  
Sbjct: 408 LFNETILP--ISVALDNDYYISAAA------ILENINQYMD------SNELPSFSDMLVY 453

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           L           +     + + TVH AKGLE   V  +       +       + +    
Sbjct: 454 LYTA--EDSYESNDKQENLILTTVHKAKGLEFDNVIYIPKKQNNKTSFIDLVTNSIIKQT 511

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
               +                     K+   EE  R+ +V  TRA + L +      + +
Sbjct: 512 KGIDV---------------------KEELAEESIRVDFVAFTRAKENLFVVTPPALAED 550


>gi|146078347|ref|XP_001463521.1| ATP-dependent DNA helicase [Leishmania infantum JPCM5]
 gi|134067607|emb|CAM65886.1| putative ATP-dependent DNA helicase [Leishmania infantum JPCM5]
          Length = 996

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 82/504 (16%), Positives = 156/504 (30%), Gaps = 119/504 (23%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQ---ASQTQCIEERFSLLSSFFLTQKFTPQK 82
           F              T  PT+ ++A  L+     +       RF  L S   T     ++
Sbjct: 53  FTRQAAETLRERVRSTLPPTLTREAHALKLKTFHAFGLECLRRFGALQSD--THVLDARQ 110

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY-LNAHYEEAK 141
                     +   +EK  ++  + +   +R  T K+     +   L    L  +Y++A 
Sbjct: 111 QYELARRVVDTYAQREKSSEAVTDLVDYVNRVKTMKVPPIPQSDPALQDAYLFPYYQKAL 170

Query: 142 -KKNCVLDFEDLIINTNDLLKKRDV----------------------------------- 165
            ++   +DF DL     DL++   V                                   
Sbjct: 171 HEERNAVDFGDLQQMFYDLIRPVPVTAFAASQGCGGGLDEQQPSQGEHQPQQQQQQGKMV 230

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            + +   +  E  H ++DE QD + IQ E++  L  D             +  VGD  Q 
Sbjct: 231 PSDVCTALRAEYTHFVVDEFQDFNEIQVELLALLAGD----------ACRVTCVGDPNQC 280

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY++ GA P      K+   + A        ++ L +++RS   I+   ++V    + A 
Sbjct: 281 IYTWRGAMPNVFGVWKKRFPQTA--------MLTLAMNYRSDGPIVEAANRVVKATQMAH 332

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              E+   T+   +S   ++  V L                                   
Sbjct: 333 HHREERAVTLVQCASEDDELQAVPL----------------------------------- 357

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              +   +                 +   DI +L R R+   L   + +      +I V 
Sbjct: 358 ---VINHVLRRRDAH----------LGYGDIAILCRSRRRVQLYCDVLQS----QRIPVR 400

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQE---DDLSFVCMLKS-PLFNFSEDDIFKICTQRH 461
                 +    +++ L+A  R  +S      D +   +L + PL   S     K      
Sbjct: 401 QLKGMSVDHLASMRSLLAFLRLCVSPHGPEGDANVRTVLNTAPLHRLSAGAAKKFFLS-- 458

Query: 462 ETETVYEYIQKFANCGISKFQHVI 485
             ++V +  +      I  ++H I
Sbjct: 459 -LDSVCQARRAMEAARIRLWRHTI 481


>gi|323497309|ref|ZP_08102328.1| DNA helicase IV [Vibrio sinaloensis DSM 21326]
 gi|323317666|gb|EGA70658.1| DNA helicase IV [Vibrio sinaloensis DSM 21326]
          Length = 688

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 81/249 (32%), Gaps = 24/249 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        ++   ++         +L        +I+ +   +  + 
Sbjct: 329 WQKHLQKWPIAYLAGDDELGSHVENPKLISWLEGQLSQLSALGASKKEIQQKLIEHPEYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY-KIDQEINHI 180
              + L L       + +  K    +DF  +I              W+   K      +I
Sbjct: 389 RLNSELALVWPCYTAWLDMLKSQGHIDFNIMITQATK---------WVEKGKFRSPWKYI 439

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           +IDE QD S  +  +I +L +              LFAVGD+ QSIY F G++       
Sbjct: 440 MIDEYQDISPQRLALIEALCQQ------NQHQDCVLFAVGDDWQSIYEFAGSDVDLTTGF 493

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +             +I  L  ++R  + +  V ++             +S    + ++ 
Sbjct: 494 AQRFPHS--------TIHHLDTTYRFNSQLGEVANRFVQKNPAQLEKDLNSHKEQKAKAV 545

Query: 301 RIGQVGTVQ 309
            +   G V+
Sbjct: 546 VLAPSGNVE 554



 Score = 45.7 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 45/395 (11%), Positives = 97/395 (24%), Gaps = 53/395 (13%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +          ++ +  D L        L   +   +S +          ++++I
Sbjct: 323 PTAFKRWQKHLQKWPIAYLAGDDELGSHVENPKLISWLEGQLSQLSALGASKKEIQQKLI 382

Query: 372 QAKDILVLVRKRKD----TPLITFLTRFLKNDYKISVVG--------NDRFILTDHLAIK 419
           +  +     R   +     P  T     LK+   I             ++          
Sbjct: 383 EHPEY---TRLNSELALVWPCYTAWLDMLKSQGHIDFNIMITQATKWVEKGKFRSPWKYI 439

Query: 420 DLMAL-------GRFI-LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET-VYEYI 470
            +             I    + +    C+L           I++      +  T   +  
Sbjct: 440 MIDEYQDISPQRLALIEALCQQNQHQDCVLF--AVGDDWQSIYEFAGSDVDLTTGFAQRF 497

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                  +         + E+ +     +P       L + K ++             ++
Sbjct: 498 PHSTIHHLDTTYRFNSQLGEVANRFVQKNPAQL-EKDLNSHKEQKAKAVVLAPSG--NVE 554

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           + L+   R  + + + L    +   +               +  MT H +KG E+  V L
Sbjct: 555 KILDDLNRKAKATQTVLLLGRNHYHKPELLTDWQKQFGLLSIEFMTCHASKGKEADYVIL 614

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +      F  +                 P                          E  RL
Sbjct: 615 LSVDEGQFPARVKSLHLDKALTQTSDPFPY------------------------AEERRL 650

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            YVG+TRA  +  +      S   K      Y ++
Sbjct: 651 FYVGLTRAKKKAWVTYKGAGSTFVKELIEDDYPVI 685


>gi|218709640|ref|YP_002417261.1| putative helicase IV [Vibrio splendidus LGP32]
 gi|218322659|emb|CAV18835.1| putative Helicase IV [Vibrio splendidus LGP32]
          Length = 961

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 89/267 (33%), Gaps = 32/267 (11%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
              +      L +            LL++     + T    + +         L +  K 
Sbjct: 456 GKLLQVLENKLLEREVEFNPIPPQDLLNNLRQLGQVTELAKLFSA--------LVDMYKA 507

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
           +  + I I +        K T  +L L   L   YE   ++   +DF D+I      ++ 
Sbjct: 508 ACLDDIAIENVIRNSIDPKQTEKALELLYPLYNRYELFLREKQWIDFNDMISKALMYVQT 567

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                    +      +IL+DE QD S  +  ++++L +             +LF VGD+
Sbjct: 568 --------GQFVSSWKYILVDEFQDISEPRARLVKALRDSL--------PGTSLFCVGDD 611

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q+IY F GA+ K            +          +L L+FR  + I  V  +  +   
Sbjct: 612 WQAIYRFSGADVKLTTNFVEYFGATSET--------QLDLTFRFNSAIGDVATQFVTRNP 663

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   S   +   +  I + G  +
Sbjct: 664 VQIKKDIQSLIKVNKPAVSILRQGRNE 690



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 22/93 (23%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +   + H +KG E+  V ++   +                           P  K    +
Sbjct: 746 ITCQSFHASKGKEADYVIIMGLTTGK----------------------HGFPSQKVTPPL 783

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           V  L+         E  RL YV +TRA  +  +
Sbjct: 784 VDALLPKGDDYEFAEERRLFYVALTRAKHRAYL 816


>gi|288934511|ref|YP_003438570.1| UvrD/REP helicase [Klebsiella variicola At-22]
 gi|288889220|gb|ADC57538.1| UvrD/REP helicase [Klebsiella variicola At-22]
          Length = 605

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 70/533 (13%), Positives = 150/533 (28%), Gaps = 137/533 (25%)

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            ++  ++D++D+++    L+ + D   W+   +  +   + +DE QD  +    +++ L 
Sbjct: 185 LRQEGLIDYDDMVVFGQRLIVEHD---WVLPLVQAKFPILAVDEYQDLGVALHRMVKRLA 241

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            +             LFAVGD  QSIY F GA+   ++              +    + L
Sbjct: 242 FE---------GGVRLFAVGDADQSIYGFTGADGALLMEL---------AGRRDVETVRL 283

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            L++RS A I+   + V       +    +  TTI  +    G                 
Sbjct: 284 QLNYRSGAGIVNASEMVLGEVRGYRASDLNRQTTIAFQLCPDGL---------------- 327

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                            ++ +   +A+ I   ++             K      DI +L 
Sbjct: 328 -----------------EDQAVHAVAQIIPTALAA------------KPGRTLGDIAILY 358

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           +  +   ++         DY           +     ++D  A                +
Sbjct: 359 KDYRAGDVVADAVTASGFDYIRVDTAAPYRKVALTSWVEDCAAWC---------AGGWRI 409

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
               L   ++  +            + +   +     ++K              A     
Sbjct: 410 GHPQLRGLTDRYLAF------HRARLDDACARHKGQELTKLL--------WALRADQHPA 455

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            DF   +          ++              +   + ++ + +  +     L     T
Sbjct: 456 CDFVASL--RNGLVDSLLATEP--------ALSDQAEQLDRMTVALAEG--GALAMLDIT 503

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  +   + ++T+H+AKG E  VV +V         ++                  
Sbjct: 504 SLGGRDGSPEHLNLLTLHSAKGCEYDVVIMVGLDLGNLPWRN------------------ 545

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    E  RL YVG+TRA D++ +         
Sbjct: 546 ------------------ETPEKLRESRRLFYVGLTRARDEVHMLYSGFVDGR 580


>gi|163782694|ref|ZP_02177690.1| ATP-dependent DNA helicase REP [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881815|gb|EDP75323.1| ATP-dependent DNA helicase REP [Hydrogenivirga sp. 128-5-R1-1]
          Length = 389

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 102/345 (29%), Gaps = 62/345 (17%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
            +    A  +A  +  ++ +            Q +DI VL+R       +T +       
Sbjct: 27  ENEQEEAIWVAEEVRTLLKSH-----------QPRDIAVLMR----VSYLTDVFESTFFK 71

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             I           +   +K+L+   R + +  D+ +F  ++   L  F +  +      
Sbjct: 72  MGIPYRVVGTLRFYERPEVKNLLYFLRLLQNPADEPAFRRVITYFLEGFGQRALELTRED 131

Query: 460 RHET--ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                 E +     + ++   +K +  + +  EL    +          +L      ++ 
Sbjct: 132 FRGNWIEALGRLADRLSSTRSAKLESFLTFFDELCRERENYP--YVIERLLDETPFLERV 189

Query: 518 ISRFG---NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           + +      E  +   EFL       +   SSL++           +  +     N V I
Sbjct: 190 LKKHKGDPRERTENALEFLRTAKEKLKEG-SSLEDF-----LNEAFMMSSEGVEENAVSI 243

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT+H AKGLE   VFL     ++  H+   +                             
Sbjct: 244 MTIHAAKGLEFGAVFLPRLEEEILPHRSALEDEGELEEERRL------------------ 285

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                            YV +TRA ++L +        +      
Sbjct: 286 ----------------FYVAVTRAKEKLYLSYTKAKGRKPSRFLS 314


>gi|294084860|ref|YP_003551620.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664435|gb|ADE39536.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 914

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 96/232 (41%), Gaps = 31/232 (13%)

Query: 63  EERFSLLSSFFLTQKFTPQKNII-----TQEINKKSPDLKEKLKKSQDE--FIKIRDRFN 115
           +  F  L +  +     P+  +      T++  +    + + LK+ +++   + I     
Sbjct: 308 QTLFDRLKAHGVKFSPMPKNQLFQVINDTKKDQRFLKLVNDFLKQFKEKQNTVSIPTLIK 367

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
             K  + TL  L + + L   Y++    N  +DF D+I  +  L+ + +           
Sbjct: 368 RSKNDERTLLFLRIFEVLLNAYQQELADNRKIDFGDMISRSAKLVSENESL--------S 419

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           +  +I+IDE QD S  ++++I    +         ++   LF VGD+ Q+IY F G++ K
Sbjct: 420 KYKYIIIDEFQDISDGRYDLITQFLK--------QNTKTKLFCVGDDWQAIYRFAGSDHK 471

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            +   +++            + ++L  +FR    I +V ++  +   +    
Sbjct: 472 IMTNFEKLF--------GMTTTLKLDQTFRYNDKIASVSEQFITQNPSQIKK 515



 Score = 44.5 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 22/98 (22%)

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +   TVH++KGLE+  V + D  +                        +  P     
Sbjct: 584 GGAISQRTVHSSKGLEADFVIVADLMADQ----------------------LGFPSEIQD 621

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           + I++ ++         E  RLLYV +TR+  Q  +  
Sbjct: 622 DPILNLVLSDEDNFQDSEERRLLYVALTRSKHQTHLIA 659


>gi|319638496|ref|ZP_07993258.1| hypothetical protein HMPREF0604_00882 [Neisseria mucosa C102]
 gi|317400245|gb|EFV80904.1| hypothetical protein HMPREF0604_00882 [Neisseria mucosa C102]
          Length = 495

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 23/220 (10%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
           R   L+   L +      + +  ++ K+     +  +  Q + +    R           
Sbjct: 225 RLPRLNKKTLEKLNHFSVDTLNSKLKKEYKADADAPEIIQLQALANLGRDLQAMESAEEA 284

Query: 125 AS----LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                 L L  Y+N    E KK      F+DL+++ +  L   +    +           
Sbjct: 285 VFICLQLDLLSYINQSIAEQKKSRRERVFDDLLLDVHQALTTNEHGNALAKAAAANWEIA 344

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           LIDE QDT  +Q+E+ R +  +             LF VGD KQ+IYSF GA+    L+ 
Sbjct: 345 LIDEFQDTDPLQYEIFRQIFIE---------QGCPLFLVGDPKQAIYSFRGADIYAYLQA 395

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
            +                 L +++RS A ++  +  +F  
Sbjct: 396 AQD----------ADRHYTLAVNYRSHAKLINGISALFKQ 425


>gi|145629401|ref|ZP_01785199.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.1-21]
 gi|144978244|gb|EDJ88008.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.1-21]
          Length = 568

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 68/530 (12%), Positives = 155/530 (29%), Gaps = 90/530 (16%)

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R     +            + +Q       +     Q          IL  +   ++ +S
Sbjct: 2   RPHFFGLNAADIHQIQQNEADWQRWADSFAQYQQTWQRQGILAMLHQILLEQGISERLLS 61

Query: 520 RFGNEVID----VLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRI 574
           +   E        L E L       ++  + L     +++ +     +    +    V+I
Sbjct: 62  QATGERDLTDFLHLAEILQQAATLHESEAALLSWFEKQIQGEGRQEAQIRLESERQLVKI 121

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           +T+H +KGLE  +V+L    +     K   K +I    + +    +W  ++++ N +   
Sbjct: 122 VTIHKSKGLEYDLVWLPFLAA---PSKDPSKKYINIYYSKERDETLWDIENRNLNALC-- 176

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQL-----------------IICKHSNTSNEKKSN 677
                 + T  E  RLLYV +TRA  Q+                 ++ +         S+
Sbjct: 177 ------EETFAEELRLLYVALTRAKYQMAFALPAQFDKKWNALHYVLSQGEIGKEINLSD 230

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINK----------DEWIAYEWS---THHPENTPL 724
            +    ++       +   +I    ++            D++ A E++         T  
Sbjct: 231 SKDTETLLQTFKEKMQDNVEICTKPNLEALPTLSINTKNDDFKASEFTGNIEQDWRITSF 290

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL-LSDNQTFNRG 783
              E   +  +           + +D  +    N   I T      ES  L   +    G
Sbjct: 291 TSIEQAHRRQNYFTESAGKKHAVFDDAKDYDSQNAIEISTALLNENESNILDLPRGKQVG 350

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM------- 836
             +H+  +  +       +        + +        ++L   + ++   P+       
Sbjct: 351 TALHRHFENCYFSDLANTEEIDK---LRQSLQLDETFTESLQNWLQQISHTPLSNEIGIA 407

Query: 837 MTTAMSCDSYSEVSV------------------------SGKINCPKKDIIISGRIDQIS 872
           +    + D   E+                          S  +   +   ++ G ID + 
Sbjct: 408 LADLANKDCIKEMPFYLAIREHFDVEAFNHTLKAHHHLPSESLQFEQIQGMVRGSIDLVF 467

Query: 873 ISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
                 ++ +YK++              + E +   +  Q  IY   L  
Sbjct: 468 RHNGKYYLVDYKSNFLGSTLADYNQEALKKEMLHSHYDWQYLIYTLALHR 517


>gi|254994269|ref|ZP_05276459.1| UvrD Rep family helicase [Listeria monocytogenes FSL J2-064]
          Length = 405

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 5/142 (3%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
           +E +    R+   K          +   +    E  K++  V++F+D++IN   +L+   
Sbjct: 268 EEIVAFIARYFDDKEILKDQLLSEVFSEMLKELERIKRREKVINFDDMLINLKCVLENDS 327

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
            +      I     +I IDE QD + +Q ++I  +    +     +S+   L  VGD+ Q
Sbjct: 328 NA---LSLIQTRYQYIFIDEFQDINPLQKQIIELICPPDYEKSVINSTK--LIIVGDDDQ 382

Query: 225 SIYSFHGAEPKRVLREKRINQK 246
           SIY F GAEP+ +    R  ++
Sbjct: 383 SIYFFRGAEPRYIKEFDRQYRQ 404


>gi|257486746|ref|ZP_05640787.1| UvrD/REP helicase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331010216|gb|EGH90272.1| UvrD/REP helicase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 555

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 75/572 (13%), Positives = 159/572 (27%), Gaps = 122/572 (21%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
                ++   L         +       + FL      +       I  K        ++
Sbjct: 22  AAKEQQRCVALTA--GPGSGKSELLAQRADFLLTTGVCRYPKRILAIAFKVDASNNLKER 79

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL--------------- 147
            +           TY     +     LAK +   +      +  L               
Sbjct: 80  VRRRCGA------TYAGRFDSYTFHGLAKRIIERFRPVLAGDDALNSGFKVVVKGKAHPV 133

Query: 148 --DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
             +F++LI     +L     +      + Q  + + +DE QD +  Q+E++  L      
Sbjct: 134 QTEFKELIPLAIKILDAYPAAI---NAVRQTYSDVFLDEFQDCTDEQYELVTRLF----- 185

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                 S R + AVGD KQ I  + GA            +            + +  +FR
Sbjct: 186 ----KGSGRRVTAVGDVKQKIMGWAGALEGIFAEFVDDFE---------AEHLNIYRNFR 232

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           S   +L + +++  + +    +               G+ G V +      + +      
Sbjct: 233 SLPHLLKLQNEIIKVLDPDSEMPAHLL---------AGEGGEVHVLSYADCEEE------ 277

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                               A  +A  IS+ +             I    I +L   R  
Sbjct: 278 --------------------ASDLAERISHWVN---------VEGIAPSKIAIL--TRIQ 306

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                       + + IS    ++   ++     + ++     I    +  ++  + +  
Sbjct: 307 PEAYCMRLTAELDAWGISYRNENKAQDISTEPIAQVIVDYLLCIYGLREPKAWTRLTR-- 364

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-FQHVIKYIHELIHIAQFCSPHDF 503
                 +D  +   + + +  + E  +  +    +K F      + E + +A        
Sbjct: 365 -RIIPVEDDAEGKLKTNWSRYIKEARKSASADMATKTFAQRWTLLEEFLAMAGPTQLAGL 423

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
                               E  + L E +    +    + +   +L+  L Q       
Sbjct: 424 ----------------SHDYESREHLRELIEEVKKYIDEALAKEPDLLKALAQLSDDQ-- 465

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                   +RI+TVH +KGLE   V L+    
Sbjct: 466 -------SIRILTVHKSKGLEFDTVVLLGVED 490


>gi|290508710|ref|ZP_06548081.1| ATP-dependent DNA helicase UvrD/PcrA [Klebsiella sp. 1_1_55]
 gi|289778104|gb|EFD86101.1| ATP-dependent DNA helicase UvrD/PcrA [Klebsiella sp. 1_1_55]
          Length = 605

 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 70/533 (13%), Positives = 150/533 (28%), Gaps = 137/533 (25%)

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            ++  ++D++D+++    L+ + D   W+   +  +   + +DE QD  +    +++ L 
Sbjct: 185 LRQEGLIDYDDMVVFGQRLIVEHD---WVLPLVQAKFPILAVDEYQDLGVALHRMVKRLA 241

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            +             LFAVGD  QSIY F GA+   ++              +    + L
Sbjct: 242 FE---------GGVRLFAVGDADQSIYGFTGADGALLMEL---------AGRRDVETVRL 283

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            L++RS A I+   + V       +    +  TTI  +    G                 
Sbjct: 284 QLNYRSGAGIVNASEMVLGEVRGYRASDLNRQTTIAFQLCPDGL---------------- 327

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                            ++ +   +A+ I   ++             K      DI +L 
Sbjct: 328 -----------------EDQAVHAVAQIIPTALAA------------KPGRTLGDIAILY 358

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           +  +   ++         DY           +     ++D  A                +
Sbjct: 359 KDYRAGDVVADAVTAGGFDYIRVDTAAPYRKVALTSWVEDCAAWC---------AGGWRI 409

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
               L   ++  +            + +   +     ++K              A     
Sbjct: 410 GHPQLRGLTDRYLAF------HRARLDDACARHKGQELTKLL--------WALRADQHPA 455

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            DF   +          ++              +   + ++ + +  +     L     T
Sbjct: 456 CDFVASL--RNGLVDSLLATEP--------ALSDQAEQLDRMTVALAEG--GALAMLDIT 503

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  +   + ++T+H+AKG E  VV +V         ++                  
Sbjct: 504 SLGGRDGSPEHLNLLTLHSAKGCEYDVVIMVGLDLGNLPWRN------------------ 545

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    E  RL YVG+TRA D++ +         
Sbjct: 546 ------------------ETPEKLRESRRLFYVGLTRARDEVHMLYSGFVDGR 580


>gi|261379087|ref|ZP_05983660.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria cinerea ATCC 14685]
 gi|269144466|gb|EEZ70884.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria cinerea ATCC 14685]
          Length = 1736

 Score =  108 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 109/367 (29%), Gaps = 53/367 (14%)

Query: 131  KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR---DVSAWIRYKIDQEINHILIDEVQD 187
            + ++  YE+  ++               +L            R +I     +IL+DE QD
Sbjct: 1202 REISRQYEKWCEE------------AAAMLSDGISGSDGDEARERIMSGFRYILVDEYQD 1249

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
             S   + ++ +L               T+ AVGD+ Q+I++++G+    +LR +      
Sbjct: 1250 ISERHYRLVSALAGRKR----DDEDKLTILAVGDDDQNIFAYNGSSNDYILRFQEEYGVD 1305

Query: 248  ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
            + +         L  ++RST +I+T  + V S   +       +   I     R      
Sbjct: 1306 SPDF--------LTFNYRSTQNIITAANCVISGMPDR----LKTRHPIAVNPERRQDPDG 1353

Query: 308  VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                  + +Q D +   +                 +I A+ +   I  + G         
Sbjct: 1354 -----GIWTQTDPERQGRVRVIRLPV-EWNPTVRRNIQAQAVIEEILRLKGLSDTG---- 1403

Query: 368  KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND--RFILTDHLAIKDLMALG 425
                  +   VL         +    +       I     +     L        L+   
Sbjct: 1404 -----WESFAVLAHNNGTLNPV----QAWCEQNGIPYFLKNEQNLPLRKTREFARLVHGT 1454

Query: 426  RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
                  +   +    L       S          + +T+ + E+    ++   +  QH  
Sbjct: 1455 ETAKDGKLSSADFNQLIEKEIGRSGKKWAN-WFAQLKTDFLNEFPIARSSENTAAPQHPA 1513

Query: 486  KYIHELI 492
             ++   +
Sbjct: 1514 AFLKNWL 1520


>gi|260577078|ref|ZP_05845057.1| UvrD/REP helicase [Rhodobacter sp. SW2]
 gi|259020748|gb|EEW24065.1| UvrD/REP helicase [Rhodobacter sp. SW2]
          Length = 959

 Score =  108 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 62/195 (31%), Gaps = 18/195 (9%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                 +    K  +   A L +   +   Y+        +DFED+I+      +     
Sbjct: 508 LQDCEAKSVRMKQGQRARAFLDVFAPVFEEYQRRLD--GRIDFEDMILRAAHYAET---- 561

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                +      HIL+DE QD S  +  ++++L                +FAVGD+ QSI
Sbjct: 562 ----GRYVSPFRHILVDEFQDISQSRARLVKALK--------AQHPDVRVFAVGDDWQSI 609

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           + F G++   +    R               ++L  +FRS   I                
Sbjct: 610 FRFAGSDIHLMRHFGREFGGSFDGEAGLHRTVDLGRTFRSVDQIAFAARTFVLRNPAQIQ 669

Query: 287 LSEDSTTTIRHRSSR 301
                  T    + R
Sbjct: 670 KRIVPAGTATEPAIR 684



 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 22/97 (22%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +   T+H +KGLE+  V L++  S                           P     + 
Sbjct: 741 RITFKTIHASKGLEADHVILLNADSGR----------------------TGFPSEIVDDL 778

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           ++S +    +     E  R++YV MTRA   + I   
Sbjct: 779 LLSLVSPEEEAYQNAEERRVMYVAMTRARHTMTILAS 815


>gi|330996006|ref|ZP_08319900.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329574003|gb|EGG55581.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 939

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 74/187 (39%), Gaps = 22/187 (11%)

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           +   +F +    +     L++ +     Y +  K+   +DFED+I ++  +L+++++   
Sbjct: 483 EHFHQFQSKSSNERNKLFLSICERCYLEYSKRLKEKQAVDFEDMINSSAKMLREKEIQGE 542

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                     +I++DE QD S  ++ +   L++              + AVGD+ QSIY+
Sbjct: 543 -----RLGFKYIIVDEYQDISRQRFNLTLELSKLCDA---------KIVAVGDDWQSIYA 588

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           + G++     + K                + +  ++R+  +++ +              S
Sbjct: 589 YAGSDITLFTQFKDSFGYGLE--------LGITQTYRNAQEVIDIAGSFIQKNTAQIRKS 640

Query: 289 EDSTTTI 295
             S   I
Sbjct: 641 LVSPKHI 647



 Score = 45.7 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 22/95 (23%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MTVH +KGL    V L++  ++                          P     + ++ 
Sbjct: 735 FMTVHRSKGLGYDHVILINARNE----------------------LYGFPSQVQDDPVLK 772

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
            +++        E  RL YV +TR  +++ I    
Sbjct: 773 YVVRDDHSMEYAEERRLFYVALTRTKNRVYIVTPQ 807


>gi|261400653|ref|ZP_05986778.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria lactamica ATCC 23970]
 gi|269209560|gb|EEZ76015.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria lactamica ATCC 23970]
          Length = 1741

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 106/328 (32%), Gaps = 40/328 (12%)

Query: 168  WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
              R +I     +IL+DE QD S   + ++ +L               T+ AVGD+ Q+I+
Sbjct: 1235 EARERIMSGFRYILVDEYQDISERHYRLVSALAGRKR----DDEDKLTILAVGDDDQNIF 1290

Query: 228  SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            +++G+  + + R +      + +         L  ++RST +I+   ++V S   +    
Sbjct: 1291 AYNGSSNEYIRRFQEEYGVDSPDF--------LTFNYRSTQNIIAAANRVISGMPDR--- 1339

Query: 288  SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
               +   I     R        +W Q   +   +                +    +I ++
Sbjct: 1340 -LKNLHPIAVNPERRQDPDGG-IWTQTDPERQGR-----VRVIRLHPEFNRRRRFNIQSQ 1392

Query: 348  RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
             +   I  +              I    I VL R       +    +       I     
Sbjct: 1393 AVIAEIRRLRN---------LADISWNSIAVLARNNDTLNPM----QAWCEQNSIPYFLT 1439

Query: 408  DRFILT---DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
            +   L+       ++ +  +            F  +++  + +  +   ++    + + +
Sbjct: 1440 NEQNLSLCKTREFVRLVHGIETAGDGMLSSADFCRLIEKEIRHSGKK--WENWFAQLKAD 1497

Query: 465  TVYEYIQKFANCGISKFQHVIKYIHELI 492
             + E+     +   +  QH   ++   +
Sbjct: 1498 FLNEFPIARPSENTAAPQHPAAFLKNWL 1525


>gi|255018241|ref|ZP_05290367.1| hypothetical protein LmonF_11981 [Listeria monocytogenes FSL
           F2-515]
          Length = 291

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 67/209 (32%), Gaps = 6/209 (2%)

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLN 534
              +K    ++ ++    ++   +       I       +       G +    L    +
Sbjct: 23  ETANKISDFVQQLNNWRELSIRENLTSLIWQIYQETNFYEFVGGLPGGKQRQANLRALYD 82

Query: 535 FTLRNEQNSYSSLQELISELEQ-----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
              + E+ S+  L   +  +E+           +      + VR+MT+H +KGLE PVV 
Sbjct: 83  RANQYEKTSFRGLFRFVRFVERLEIRGDDLGTAKTLGEKEDVVRMMTIHASKGLEIPVVI 142

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +     +        K  +                      +   + +   +    E  R
Sbjct: 143 VSGLSRKFNMRDIYSKTLLDKDYGFASSYRDVEKMIVYPTIMQQAIKQKKSREMIAEEMR 202

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
           +LYV +TRA ++LI+        +   N 
Sbjct: 203 VLYVALTRAEEKLILVATVPDFEKTSKNW 231


>gi|157865050|ref|XP_001681233.1| ATP-dependent DNA helicase [Leishmania major strain Friedlin]
 gi|68124528|emb|CAJ02587.1| putative ATP-dependent DNA helicase [Leishmania major strain
           Friedlin]
          Length = 996

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 69/434 (15%), Positives = 135/434 (31%), Gaps = 117/434 (26%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY-LNAHYEEAK-KKNCVLDFEDLII 154
           +EK  ++  + +   +R  T +M         L    L  +Y++A  +++  +DF DL  
Sbjct: 125 REKSSEAVTDLVDYVNRVKTMRMPPIPQLDPALQDAYLFPYYQKALHEEHNAVDFGDLQQ 184

Query: 155 NTNDLLKKRD-----------------------------------VSAWIRYKIDQEINH 179
              DL++                                      V + +   +  E  H
Sbjct: 185 MFYDLIRPVPATALTASQGCGGGLDEQQPSQGEHQPPQQQQQGGMVPSDVCTALRAEYTH 244

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++DE QD + IQ E++  L  D             +  VGD  Q IY++ GA P     
Sbjct: 245 FVVDEFQDFNEIQVELLALLAGDACH----------VTCVGDPNQCIYTWRGAMPNVFGV 294

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            K+   + A        ++ L +++RS   I+   ++V    + A    E+   T+   +
Sbjct: 295 WKKRFPQTA--------MLTLAVNYRSDGPIVEAANRVVKATQMAHHHREERAVTLVQCA 346

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
           S   ++  V L                                      +   +      
Sbjct: 347 SEDDELQAVPL--------------------------------------VIEHVLRRRDA 368

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      +   DI +L R R+   L   + +      +I V       +    +++
Sbjct: 369 H----------LGYGDIAILCRSRRRVQLYCDVLQS----QRIPVRQLRGMSVDHLASMR 414

Query: 420 DLMALGRFILSQE---DDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
            L+A  R  +S      D +   +L + PL   S          +    ++    Q    
Sbjct: 415 SLLAFLRLCVSPHGPEGDANVRTVLNTAPLHRLSP------GAAKKFLLSLDSVCQARRA 468

Query: 476 CGISKFQHVIKYIH 489
              ++ +     IH
Sbjct: 469 TEAARIRSWRHTIH 482


>gi|84387388|ref|ZP_00990408.1| helicase IV [Vibrio splendidus 12B01]
 gi|84377837|gb|EAP94700.1| helicase IV [Vibrio splendidus 12B01]
          Length = 962

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 89/267 (33%), Gaps = 32/267 (11%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
              + +    L +            LL++     + T    + +         L +  K 
Sbjct: 456 GKLLQELENKLLEREVEFNPIPPQDLLNNLRQLGQVTELAKLFSA--------LVDMYKA 507

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
           +  + + I +        K T  +L L   L   YE   ++   +DF D+I      ++ 
Sbjct: 508 ACLDDVAIENVIRNSIDPKQTEKALELLYPLYNRYELFLREKQWIDFNDMISKALMYVQT 567

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                    +       IL+DE QD S  +  ++++L +             +LF VGD+
Sbjct: 568 --------GQFISSWKFILVDEFQDISEPRARLVKALRDSL--------PGTSLFCVGDD 611

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q+IY F GA+ K            +          +L L+FR  + I  V  +  +   
Sbjct: 612 WQAIYRFSGADVKLTTNFVEYFGATSET--------KLDLTFRFNSAIGDVATQFVTRNP 663

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   S   +   +  I + G  +
Sbjct: 664 VQIKKDIQSLIKVNKPAVSILRQGRNE 690



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 22/120 (18%)

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L     ++  Y    +     +  ++   + H +KG E+  V +    +           
Sbjct: 721 LARFWHQMPDYQQLQEINRQYSSLQITCQSFHASKGKEADYVIITGLTTGK--------- 771

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                           P  K    +V  L+         E  RL YV +TRA  +  +  
Sbjct: 772 -------------HGFPSQKVTPPLVDALLPKGDDYEFAEERRLFYVALTRAKHRAYLLA 818


>gi|169335123|ref|ZP_02862316.1| hypothetical protein ANASTE_01530 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257861|gb|EDS71827.1| hypothetical protein ANASTE_01530 [Anaerofustis stercorihominis DSM
           17244]
          Length = 663

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 26/173 (15%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            + +   L   +   YE+    N  +DF D+I+   D + K            ++  +IL
Sbjct: 352 RSKSFYKLVLPIYEAYEKILYHNNQIDFNDMILKATDYVNK--------GLYLKDYKYIL 403

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  +  ++ S+                +FAVGD+ QSI+ F G++       +
Sbjct: 404 IDEFQDISSSRMRLVDSIYRKSES---------EIFAVGDDYQSIFRFTGSDINIFYDFE 454

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           +                 +  ++R  ++I  + +K      +       S   
Sbjct: 455 KEY---------NAKKYLIENNYRFDSNIANLSNKFILQNPHQIKKELKSKRA 498



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 22/100 (22%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++  MTVH AKGLE   VF+++T +                        +  P + + +N
Sbjct: 571 DINFMTVHKAKGLECDYVFILNTFNN----------------------LMGFPCNITDDN 608

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           ++  L+K+ +     E  RL YV MTRA ++L I    N+
Sbjct: 609 LIKLLLKNKENFLYAEERRLFYVAMTRAKEKLFIMVDRNS 648


>gi|121583328|ref|YP_973764.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120596586|gb|ABM40022.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 914

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 90/302 (29%), Gaps = 38/302 (12%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKY---VSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           ++   +             D   Y   +    +       K  +T      +    E   
Sbjct: 430 DAKAYLEHWALDANGQAPPDFVGYQEGMEWKKQVHAANGTKLLETTVAQLWSGKAFEYLQ 489

Query: 68  L-LSSFFLTQKFTP------QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFN---TY 117
             L    +T +  P      +K I    + K         K ++ +   ++ R       
Sbjct: 490 TQLQQLGVTLEPNPDRPVPGRKAIENPRLAKTFRSFITHAKSNRLDLGDLKKRLESGVAG 549

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                    L L + +   +E    K+  +DF+D++    D ++        + K     
Sbjct: 550 DFKFRHTMFLGLLEKIWTQWEAQLTKDKCIDFDDMLNLATDCVE--------QGKWKSPY 601

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             +++DE QD S  +  ++  L              + LFAVGD+ QSI  F GA+   +
Sbjct: 602 ELVMVDEFQDASQARARLVAGLVS---------GPDKCLFAVGDDWQSINRFAGADLAVM 652

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              +R               ++L  +FR    +  +              +  S+     
Sbjct: 653 TDFERRY--------GSAVTLKLETTFRCPQSLCDISSAFVQKNPKQLRKAVRSSKPNLA 704

Query: 298 RS 299
             
Sbjct: 705 EP 706



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 64/230 (27%), Gaps = 41/230 (17%)

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           + + ++      +      K+ T     +++ +    F      + +  +          
Sbjct: 647 ADLAVMTDFERRYGSAVTLKLETTFRCPQSLCDISSAFVQKNPKQLRKAV------RSSK 700

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
              +       +   ++ R     R G    +                   +  L     
Sbjct: 701 PNLAEPVLIIRVDDERQIRAAVQMRLGEISREN----------ATVGRKPKVLMLGRY-- 748

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                    ++ +  E+  +TVH++KGLE+  + L    S+                   
Sbjct: 749 -QKDKAYLPYANDALELDFITVHSSKGLEADHIILPRMTSET------------------ 789

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
               +  P   + + ++   +         E  RL YV +TRA   + + 
Sbjct: 790 ----MGFPSQIADDPVLLLAMPGGDAFENAEERRLFYVALTRARATVTLI 835


>gi|126176131|ref|YP_001052280.1| UvrD/REP helicase [Shewanella baltica OS155]
 gi|125999336|gb|ABN63411.1| UvrD/REP helicase [Shewanella baltica OS155]
          Length = 1004

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 84/237 (35%), Gaps = 19/237 (8%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           E+ K    L    K +  +   +   F      + T  +  L + +   YE+    N  +
Sbjct: 512 ELAKMFSQLIGLYKAACLDEHGLDGVFARAADAQQTRKAFELLEPIITRYEQHLAINGDI 571

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DFED+I      L+        R +       I++DE QD S  +  ++R+L +      
Sbjct: 572 DFEDMIGKALTYLQ--------RGQFISPWRFIMVDEFQDISEPRARLVRALRDSCAPHS 623

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                  +LF VGD+ Q+IY F GA+     +                +  +L L+FR  
Sbjct: 624 KAQ---ASLFCVGDDWQAIYRFSGADVSLTTQFTHYF--------GPTARNDLDLTFRFN 672

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           + I  V  +  +           S T +   +  I + G  +   +     ++    
Sbjct: 673 SSIGQVATQFVTQNPTQLSKDIRSLTQVTSPAVSILRRGENEPPSKDEPSPNALEQA 729



 Score = 43.0 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 22/96 (22%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++   + H +KG E+  V ++   +                           P  K    
Sbjct: 777 KIECQSFHASKGKEADYVVIMGMKTG----------------------MHGFPSMKITPP 814

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           I+   +   +     E  RL YV +TR   +  +  
Sbjct: 815 ILDAFLPKTEAFEFAEERRLFYVALTRTKHRAYVIA 850


>gi|258511682|ref|YP_003185116.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478408|gb|ACV58727.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 462

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 21/220 (9%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L E+   S  E       ++     +        ++ +   Y   K+     D +D+++ 
Sbjct: 121 LGERHAASMYELQSYLTLYSRMIGRREQDELDNKSRRILESYVRKKRALNRWDHDDILLA 180

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
           +  L + R  S    ++++    +IL+DE QDT+ +QW ++ SL E              
Sbjct: 181 SLHLFQSRSASKIRLFQMN----YILVDEFQDTNELQWALLTSLVERNSALA-------- 228

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            F VGD+ QSIY+F GA P  + R   +  K             L L+FRS   IL    
Sbjct: 229 -FVVGDDDQSIYAFRGASPVYLQRAVEVLPK--------ARRYLLTLNFRSDRKILRHAA 279

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
           ++    +                            W  V 
Sbjct: 280 QLIRHVKVRVDKPLRGVNDAEGVCLAYEVPDRAAQWRLVA 319


>gi|167946054|ref|ZP_02533128.1| ATP-dependent exoDNAse beta subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 187

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 16/172 (9%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +          YL +     K++   L F+DL+      L+  +        + +     
Sbjct: 2   RRAAWLREAHAYLLSELARRKEERRQLYFDDLLRRMQQALQG-ESGGRFAAAVRRRFPVA 60

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           +IDE QDT  +Q+++          G     +   LF +GD KQ+IYSF GA+    ++ 
Sbjct: 61  MIDEFQDTDPLQYQIF--------SGIYPGEADNALFMIGDPKQAIYSFRGADIFTYMQA 112

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +R             +   L  ++RS + +++ V+ +F           +  
Sbjct: 113 RRE-------TASAGTQYTLDTNWRSASALVSCVNALFGHKRLESPFIYEPD 157


>gi|260777686|ref|ZP_05886579.1| DNA helicase IV [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605699|gb|EEX31984.1| DNA helicase IV [Vibrio coralliilyticus ATCC BAA-450]
          Length = 688

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 78/248 (31%), Gaps = 22/248 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        ++   ++         +L        +I+ R   +  + 
Sbjct: 329 WQKHLQKWPIAYLAGDDELGSHVENPKLIAWLNKQLNQLSAMGCTKKEIQQRLVDHNDYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L       + +  K    +DF  +I               ++ K      +I+
Sbjct: 389 RLNSELALVWPCYQAWLDMLKSEGHIDFNIMITKATQ--------HVMKGKFKAPWKYIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  +  ++ +L +              LFAVGD+ QSIY F GA+        
Sbjct: 441 IDEYQDISPQRLALVEALCQQ------KDERNCVLFAVGDDWQSIYEFAGADVDLTTGFA 494

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                         +I  L  ++R    I  V ++              S    + ++  
Sbjct: 495 ERFPHS--------TIHHLDTTYRFNNQIGEVANQFVQQNPAQLEKVLQSHKEQKAKTVT 546

Query: 302 IGQVGTVQ 309
           +    TV+
Sbjct: 547 LAPSNTVE 554



 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 104/396 (26%), Gaps = 55/396 (13%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +          ++ +  D L        L   +   ++ +          ++R++
Sbjct: 323 PTAFKRWQKHLQKWPIAYLAGDDELGSHVENPKLIAWLNKQLNQLSAMGCTKKEIQQRLV 382

Query: 372 QAKDILVLVRKRKD----TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              D     R   +     P        LK++  I          T H+      A  ++
Sbjct: 383 DHNDY---TRLNSELALVWPCYQAWLDMLKSEGHIDFNIM-ITKATQHVMKGKFKAPWKY 438

Query: 428 IL-SQEDDLSFVCML------------KSPLFNFSEDDIFKICTQRHETE---TVYEYIQ 471
           I+  +  D+S   +                LF   +D          + +      E   
Sbjct: 439 IMIDEYQDISPQRLALVEALCQQKDERNCVLFAVGDDWQSIYEFAGADVDLTTGFAERFP 498

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--EVIDVL 529
                 +         I E+ +     +P      +L + K ++           V  +L
Sbjct: 499 HSTIHHLDTTYRFNNQIGEVANQFVQQNPAQL-EKVLQSHKEQKAKTVTLAPSNTVEKIL 557

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           DE        +      L    +   +     +         +  MT H +KG E+  V 
Sbjct: 558 DELNRKAKSTQTV----LLLGRNHYHKPELLSEWQKQFALLSIEFMTCHASKGKEADFVI 613

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           ++      F                               +I   L +        E  R
Sbjct: 614 VLSVDEGQFP------------------------ARVKALHIDGALTQSEDTFPYAEERR 649

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
           L YV +TRA  ++ I    + S+  K      Y ++
Sbjct: 650 LFYVALTRAKKKVWITYTGSGSSFVKELTEQDYPVI 685


>gi|315126818|ref|YP_004068821.1| DNA helicase IV [Pseudoalteromonas sp. SM9913]
 gi|315015332|gb|ADT68670.1| DNA helicase IV [Pseudoalteromonas sp. SM9913]
          Length = 707

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             L K L A+Y         +DF+D+I+   D +           K      +I++DE Q
Sbjct: 385 WKLLKPLLANYNHYLHTQGEIDFDDMILKALDYVT--------AGKFASPWRYIMVDEFQ 436

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++++L +             +LF VGD+ Q+IY F GA+ +           
Sbjct: 437 DISPTRAALVKALRDS--------KPRSSLFVVGDDWQAIYRFSGADMRLTTEFAAHF-- 486

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                G     I L ++FR    I  V                +S + +   +
Sbjct: 487 -----GFTTQTI-LDVTFRFNNKISEVASCFIMKNPAQLAKQINSLSQVTKPA 533



 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 22/101 (21%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +   T H +KG E+  V ++      F     K                          +
Sbjct: 601 IECDTFHGSKGKEADYVVILGMHGGQFGFPSTKPS----------------------PAM 638

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
           +  L+         E  RL YV +TRA  ++ I    N  +
Sbjct: 639 LEALLPAKDLYAHSEERRLFYVALTRAKHKVFIISDDNNRS 679


>gi|289755316|ref|ZP_06514694.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           EAS054]
 gi|289695903|gb|EFD63332.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis
           EAS054]
          Length = 407

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/401 (14%), Positives = 116/401 (28%), Gaps = 74/401 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +            S +    +L+              L+        +  + 
Sbjct: 71  AAGEMRSRL--RALDAAARTGSGVGAVQALTFHAAAYR------QLRYFWSRVIADTGWQ 122

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL S F        +  +    +    DL  +++ ++   I   +        +      
Sbjct: 123 LLDSKFAVVARAASRTRLHASTDD-VRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLD 181

Query: 128 TL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + + YE  K +   +   D            +  A +  +        ++DE Q
Sbjct: 182 AAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQ 241

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +Q  V+ +   D             L  VGD  Q+IYSF GA P+ +L   R    
Sbjct: 242 DVTPLQQRVLSAWLGD----------RDDLTVVGDANQTIYSFTGASPRFLLDFSRRFP- 290

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                    +++ L   +RST  ++++ ++V +                + R S   + G
Sbjct: 291 -------DAAVVRLERDYRSTPQVVSLANRVIAAARGR-------VAGSKLRLSGQREPG 336

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V                          S  + S     A  +A +I+ +I + T     
Sbjct: 337 PVP-------------------------SFHEHSDEPAEAATVAASIARLIASGTP---- 367

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
                   ++ +L R    + +             I+  G 
Sbjct: 368 ------PSEVAILYRVNAQSEVYEEAL----TQAGIAYRGG 398


>gi|289674809|ref|ZP_06495699.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           syringae FF5]
          Length = 551

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 63/558 (11%), Positives = 141/558 (25%), Gaps = 113/558 (20%)

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           +  + +          ++    G +   +         L E L           + ++ L
Sbjct: 1   MPMLRRLLHDFALPQTLMTRNDGERVLTNLL------HLSELLQQAAAELDGEQALIRHL 54

Query: 551 ISELEQ---YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              L               ++   V+++T+H +KGL+ P+VFL    S          + 
Sbjct: 55  GDHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLQYPLVFLPFICSSKPVDGSRLPLQ 114

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
              +            +S+        LI+        E  RLLYV +TR+     +   
Sbjct: 115 FHDADG----------KSQISLQPTEALIQQADDERLAEDLRLLYVALTRSEHACWL-GV 163

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
           ++      +        +         + +    N   +D     E     P   P +  
Sbjct: 164 ADLKRGNANTSMLHRSALGYLLGGGAVLAESAELNVWLRDLAQGCEAIALQPVPEPTDER 223

Query: 728 ETIKQLMD---------EQKIPKKLFSPIKN--------DINEPYILNPSTIDTKGKTNL 770
            +  +             +       +               +    +P          L
Sbjct: 224 FSAPRNEAALVKLLVPKRRAAENWWIASYSALRIGDTVTAGADESPDSPQAQKLFDDERL 283

Query: 771 ESLLSD------------NQTFNRGLIIHKLLQV-------IFTLPEHKRKNFITSYCTK 811
           +                  +  N G  +H LL+        +      K ++ +   C +
Sbjct: 284 DPEAPRDILTSGGDIHRFPRGPNPGTFLHGLLEWAGNEGFAMTAHAPEKLQDAVARRCNR 343

Query: 812 NAKLWPAKEYKNLLLSITRL-LENP------MMTTAMSCDSYS-EVSV---SGKINCPKK 860
                      + L  +  + L          +      + Y  E+     S  +N  + 
Sbjct: 344 RGWAGWINTLSDWLQHMLNMPLRLSPDAAPVALGELDQPNQYRVEMEFWFASNNVNVAQM 403

Query: 861 DIIIS----------------------GRIDQISISQQNIFIFEYKTHHHVPQEIEH--- 895
           D ++                       G ID     +   ++ +YK++     +  +   
Sbjct: 404 DALVRRFTHDNAPRAATETVSLNGMFKGFIDLTFEHEGRYYVADYKSNWLGSDDSAYTQL 463

Query: 896 ------IPYTHIAQLSIYEKILKDS---------YPNKSLVCLLIYVSE------PKVFI 934
                 +   +  Q  +Y   L            Y       L +++           F 
Sbjct: 464 AMETAILDNRYDLQYVLYLLALHRQLKTRMADYDYDQHMGGALYLFLRGSRSASQGAYFT 523

Query: 935 IPQNKLNKAFAEISTKIP 952
            P  +L ++   +    P
Sbjct: 524 RPPRELIESLDLLFQGKP 541


>gi|90408380|ref|ZP_01216543.1| putative ATP-dependent DNA helicase [Psychromonas sp. CNPT3]
 gi|90310543|gb|EAS38665.1| putative ATP-dependent DNA helicase [Psychromonas sp. CNPT3]
          Length = 581

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 80/550 (14%), Positives = 154/550 (28%), Gaps = 130/550 (23%)

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + N  +DFE ++  +  LLK           +   ++H+LIDE QD S +Q+E+
Sbjct: 161 DYHKYLRDNGYIDFELILNISYKLLKMYPALCDRLALL---VSHLLIDEYQDISEVQYEI 217

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I+ +                L  +GD++Q+IY+  GA  K  +  +   +          
Sbjct: 218 IKLIIMK---------RHSKLTLIGDKEQAIYTGLGAIVKDKIEIENYFEID------NI 262

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L   FRS+  I+                 +D    I  +S        V L     
Sbjct: 263 CEKNLTWCFRSSQRIID-----------YYKKYQDDKHEIESKSDLKNFHSIVHL----- 306

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                                      + LA  +   +   +             I A +
Sbjct: 307 ---------------------ENNIDKTQLADYVIGVVETHLKQG----------INANE 335

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           I+VL         ++     +   + I+                 L+ L        + +
Sbjct: 336 IVVLCPSWFGVINLSKEIDLMDKSFSINGFLVSPIPKNQDNIWLSLIRLMLLKPCISNYI 395

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           +   +           ++           ++               +  I+ I E I++ 
Sbjct: 396 NRNRLAN---------ELSDNLYHSGSLGSILNPKVILRTINSLVIETDIE-IVEWINLV 445

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISEL 554
                +     I+G        +++ G   +  +D  L    + E Q   + L +     
Sbjct: 446 IDSFCNILKIDIIGNS------VAKVGKCSL--IDSALERMKKYEMQYRANDLHKFF--- 494

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                       +  N V++ T H+ KG E  VV           +              
Sbjct: 495 ------------SASNGVKLTTCHSTKGDEYEVVICTGLLKGKIPN-------------- 528

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                             +D+I            RLLYV  +RA   L +        + 
Sbjct: 529 -----------------WNDIIGCDNLHQNYVARRLLYVIGSRAKKHLYMISEKGYKTKS 571

Query: 675 KSNQRTWYDM 684
            ++  T   +
Sbjct: 572 GADYETTAQL 581


>gi|330998293|ref|ZP_08322118.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329568682|gb|EGG50483.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 871

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 76/224 (33%), Gaps = 25/224 (11%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              L     P  +   +   +        +K S     ++  +  +    +ST     + 
Sbjct: 457 DAELYDMVLPPNSKQEKAFIRLVVTFATLIKSSCKSIKEVLKQAKSVGDERSTFIIKRIF 516

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y E  K +  +DF D I+   ++ +              +  +I++DE QD S+
Sbjct: 517 QPVYELYIEELKSSNQIDFTDAILQATEICRSSHPV---------KYEYIIVDEFQDISV 567

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            ++  ++ L E         + P  L+ VGD+ QSIY F G++     +           
Sbjct: 568 DRYNFLKVLREG--------NPPAKLYCVGDDWQSIYRFSGSDMALFNQFSDYF------ 613

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                 I  +  ++R    ++++  +     +            
Sbjct: 614 --GSTEINRIETTYRFGEPLVSLSSQFIQRNKTQLKKDIHPFNP 655



 Score = 42.2 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 22/99 (22%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++  +TVH +KGLE+  V ++                               P   S + 
Sbjct: 722 KIEFLTVHKSKGLEADYVIILQCNKDT----------------------YGFPSMVSDDP 759

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
           ++  ++    +    E  RL YV +TRA  +  +    +
Sbjct: 760 VLDYVLTKSDQYPYGEERRLFYVAITRAKIKTYVLYDRH 798


>gi|254439115|ref|ZP_05052609.1| Topoisomerase DNA binding C4 zinc finger domain protein
           [Octadecabacter antarcticus 307]
 gi|198254561|gb|EDY78875.1| Topoisomerase DNA binding C4 zinc finger domain protein
           [Octadecabacter antarcticus 307]
          Length = 460

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               R+R         ++A + + + +   Y+        +DFED+I+   +        
Sbjct: 16  VASCRERAEKSADKARSMAFMKIFEPVLEAYQTRLGDR--IDFEDMIVRATE-------- 65

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                +      H+L+DE QD S  +  ++++L                +FAVGD+ QSI
Sbjct: 66  HVAAGRYKSPYRHLLVDEFQDISEGRARLLKALK--------AQHEDARIFAVGDDWQSI 117

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y F G++   +                  S ++L  +FRS   I            +   
Sbjct: 118 YRFTGSDIHLMRDFGEEFGGTFAGKSGVHSAVDLGRTFRSVDRIALPARSFVLKNPSQIT 177

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                  T    + ++   G                  + E+  S  D +   +     +
Sbjct: 178 KKVIPAGTTDEPAIKVAHYG---------------WGQEGEALKSALDGIEAGAGGDKAS 222

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +     N +  + +    ++  + +   + + R +        + +   +        
Sbjct: 223 VLLLGR-YNFLEPEELPQLRRQYPLLSIKFMTVHRSKGLEADHVVILKAASDRMGFPSEI 281

Query: 407 ND 408
            D
Sbjct: 282 VD 283



 Score = 44.9 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 72/253 (28%), Gaps = 29/253 (11%)

Query: 423 ALGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            L + + +Q +D     +    +S       D             T        +   + 
Sbjct: 93  RLLKALKAQHEDARIFAVGDDWQSIYRFTGSDIHLMRDFGEEFGGTFAGKSGVHSAVDLG 152

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLIL---GAKKGRQQFISRFGNEVIDVLDEFLNFT 536
           +    +  I          +P      ++      +   +       +  + L   L+  
Sbjct: 153 RTFRSVDRIALPARSFVLKNPSQITKKVIPAGTTDEPAIKVAHYGWGQEGEALKSALDGI 212

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                   +S+  L       P  + +         ++ MTVH +KGLE+  V ++   S
Sbjct: 213 EAGAGGDKASVLLLGRYNFLEPEELPQLRRQYPLLSIKFMTVHRSKGLEADHVVILKAAS 272

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                                   +  P     + ++  ++   ++    E  RLLYV +
Sbjct: 273 DR----------------------MGFPSEIVDDPLLDLVLPKPEEYDHAEERRLLYVAL 310

Query: 656 TRASDQLIICKHS 668
           TRA   + I    
Sbjct: 311 TRARKSVTILADR 323


>gi|302343614|ref|YP_003808143.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
 gi|301640227|gb|ADK85549.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075]
          Length = 946

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/402 (13%), Positives = 109/402 (27%), Gaps = 75/402 (18%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL-----------KKAQTLQQA 56
           +++     +     P          +   L    G+ + L           +  Q L   
Sbjct: 472 AMDYDGGHLIVRAGPGAGKTRLLTARAARLVAGGGDASRLLLVTFTRKAAEELGQRLATL 531

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                    F  L    LT     +  I+  +  ++      K        +        
Sbjct: 532 GLEAARTHTFHGLGLEILTDHLGRRPAIVADQRREEILSQAAKAVDLPPGQVDWAISRLK 591

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            ++ +    +L  A      YE+A     +LD +DL       L +      +  +   +
Sbjct: 592 QRLDQRPEPTLAPA---WLAYEQALAAEGLLDLDDLPRQAALALAQDGA---LAGRWSGK 645

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            +HIL+DE QD + +Q  ++R             +    + A+GD  Q+IY F GAE   
Sbjct: 646 FDHILVDEYQDANPVQVALLRR----------LAAGGALVAAIGDPDQAIYGFRGAERAL 695

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                R                +L  ++RS+  I+     + +     +  +  +     
Sbjct: 696 FADFGRDF--------AGARSFDLRRNYRSSGRIVAAATALMAAEAGREAYAPQAVNPAG 747

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                                                    + +     A  +A  +  +
Sbjct: 748 -----------------------------------PLVECFEAADPQAEAIWLAQRVVEL 772

Query: 357 I-----GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           +           +  + +   A DI VL R       I    
Sbjct: 773 LGGLDSRQVEAGAGARSQGFSAGDIAVLYRLHAQAEPIAQAL 814



 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 36/131 (27%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                            V+++++H AKGLE PVVF+V     +  ++   K         
Sbjct: 825 ATAHLAELDPLDLRAQRVKLLSMHAAKGLEFPVVFVVGLEEGLLPYQPPGK--------- 875

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII--CKHSNTSN 672
                                      +  +E  RLLYV MTRA  +L +  C       
Sbjct: 876 -------------------------DAADPDEERRLLYVAMTRARQRLFLSRCCWRMLFG 910

Query: 673 EKKSNQRTWYD 683
           E +   R+ + 
Sbjct: 911 ESRRPGRSPFW 921


>gi|54308421|ref|YP_129441.1| DNA helicase IV [Photobacterium profundum SS9]
 gi|46912849|emb|CAG19639.1| hypothetical helicase IV [Photobacterium profundum SS9]
          Length = 694

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 23/249 (9%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKI 110
           + A+  +  ++  +           + +   KN        +  +L  +   S+ + + I
Sbjct: 315 ESAASAKRWQKHLTQWRIPGFKADNSMEQQAKNEQLASWVWRHIELIGQSGLSKSDLVAI 374

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            D+ N     +   + L L       YE+  K N  +DF  +I    + +          
Sbjct: 375 IDKSNNPATKQRMKSELGLLWPCFRAYEQHLKSNKQIDFNTMIQKAVEYVND-------- 426

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            K   E   I++DE QD S  +  +I +L       +       TLFAVGD+ Q+IY F 
Sbjct: 427 GKFVPEWRFIMVDEYQDISPQRLSLIEALCR----SEEETKPRPTLFAVGDDWQAIYRFA 482

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+                       I EL  ++R  + I  V +               
Sbjct: 483 GADVNLTTGFADRF--------GSSHITELDTTYRFNSMIGEVANTFIQQNPQQLRKDLT 534

Query: 291 STTTIRHRS 299
           S    + ++
Sbjct: 535 SHKKQKRKA 543



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                I E+ +     +P      +   KK +++ ++    ++++   E +    +NE+ 
Sbjct: 509 RFNSMIGEVANTFIQQNPQQLRKDLTSHKKQKRKAVTLLCQDLLE--QELVQLASQNEKP 566

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L    ++ ++               +  MT H +KG E+  VF++D    VF    
Sbjct: 567 VTVLLLGRNNK-QRPEKLKAWQTQWPQLNMTFMTCHGSKGREADFVFILDVNRGVFPAPE 625

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                       + + L    +     E  RL YV +TRA   +
Sbjct: 626 R------------------------ETGLAACLQSKNEGYADAEERRLFYVALTRAKKHV 661

Query: 663 IICKHSNTSNE 673
            +C     ++ 
Sbjct: 662 WVCADPEKTSS 672


>gi|323491803|ref|ZP_08096978.1| DNA helicase IV [Vibrio brasiliensis LMG 20546]
 gi|323313938|gb|EGA67027.1| DNA helicase IV [Vibrio brasiliensis LMG 20546]
          Length = 688

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 22/238 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  S     +L        ++   ++         +L   +    +++     +  + 
Sbjct: 329 WQKHLSKWPIAYLAGDDELGSHVENPKLIAWLEQQLSQLAAMECNKKELQQLLVEHPEYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L+L       + +  K+   +DF  +I      + K         K       I+
Sbjct: 389 RLNSELSLVWPCLQAWNQQLKEQGHIDFNLMISRATQYVTK--------GKFRSPWRFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  +  +I +L +          +   LFAVGD+ QSIY F G++        
Sbjct: 441 IDEYQDISPQRLALIEALCQQET------QTNCVLFAVGDDWQSIYQFAGSDVDLTTGFA 494

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                         +I  L  ++R    +  V ++           + +S    + ++
Sbjct: 495 ERFPHS--------TIHHLDTTYRFNDKLGQVANRFVQQNPMQLPKTLNSHKQQKSKA 544



 Score = 53.8 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 62/206 (30%), Gaps = 27/206 (13%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
             E         +         + ++ +     +P      +   K+ + + ++   +  
Sbjct: 493 FAERFPHSTIHHLDTTYRFNDKLGQVANRFVQQNPMQLPKTLNSHKQQKSKAVTMLPSN- 551

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              +++ L+   R  +++ + L    +   +         +     +  MT H +KG E+
Sbjct: 552 --NIEKVLDQLNRKAKSTQTVLLLGRNHYHKPELLNDWQKNFGLLSIEFMTCHASKGKEA 609

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             VF+V      F                               +I   L +        
Sbjct: 610 DFVFVVGVDEGQFP------------------------ARVKALHINGALTQSNDTFPYA 645

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTS 671
           E  RL YV +TRA  ++ +    + S
Sbjct: 646 EERRLFYVALTRAKKRVWVTYSGSGS 671


>gi|298368402|ref|ZP_06979720.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282405|gb|EFI23892.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 1739

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/492 (12%), Positives = 139/492 (28%), Gaps = 106/492 (21%)

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                +IL+DE QD +   +E++ +L       ++      T+ AVGD+ Q+IY+F+G   
Sbjct: 1232 AGFRYILVDEYQDITEEHYELVSALAGRKREDED---EKLTIIAVGDDDQNIYAFNGTSN 1288

Query: 235  KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
            + + R  +    +  +         L  ++RST +I++  +++             +   
Sbjct: 1289 EYIHRFLQDYGVKQPDF--------LTFNYRSTQNIISAANRLIQDMGGR----LKTLHP 1336

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
            I     R  Q         + S+ D +   +            ++   +I A+ +A  I 
Sbjct: 1337 IVINPERQHQPNG-----GIWSERDGERQGRVRVVKLPS-QGSRQQKNNIQAQAVAAEIR 1390

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
             +              I+ + I VL R   +   +    +       I            
Sbjct: 1391 RLQA---------LADIEYRSIAVLSRNNGELKSM----QAWCEQNNIPYFLA------- 1430

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                             +D    + +  +  F    + +     Q  + E  +       
Sbjct: 1431 -----------------KDRKHGIRLRHTREFVRLVEQLVPDKQQEGQKEKTFTGN---E 1470

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
               + + Q       +        +  DF             F+  +  E +        
Sbjct: 1471 FAELIRSQDAGGMWQDYFRQ----TAQDFLRENTADTGYPAAFLKNWLYEYVGN------ 1520

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                                            +  + + + T H+ KGLE   VF++D G
Sbjct: 1521 -----------------------------ESESRSDGIFLGTAHSVKGLEFKHVFVLDGG 1551

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK------STQEEYN 648
                     +  ++  +   +    I           + +  + +++          EY 
Sbjct: 1552 WNSADESEQRLYYVAMTRAIETLTLIQNTPQHLWIGRLPEETECVERGYTVLPELDTEYR 1611

Query: 649  RLLYVGMTRASD 660
             L      +   
Sbjct: 1612 TLSLYSDKKEKR 1623


>gi|153002469|ref|YP_001368150.1| UvrD/REP helicase [Shewanella baltica OS185]
 gi|151367087|gb|ABS10087.1| UvrD/REP helicase [Shewanella baltica OS185]
          Length = 996

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 19/237 (8%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           E+ K    L    K +  +   +   F      + T  +  L + +   YE+    N  +
Sbjct: 512 ELAKMFSQLIGLYKAACLDEHGLDGVFARAADAQQTRKAFELLEPIITRYEQHLAINGDI 571

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DFED+I      L+        R +       I++DE QD S  +  ++R+L +      
Sbjct: 572 DFEDMIGKALTYLQ--------RGQFISPWRFIMVDEFQDISEPRARLVRALRDSCAPHS 623

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                  +LF VGD+ Q+IY F GA+     +                +  +L L+FR  
Sbjct: 624 KAQ---ASLFCVGDDWQAIYRFSGADVSLTTQFTHYF--------GPTAQSDLDLTFRFN 672

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           + I  V  +  +           S   +   +  I + G  +   +     ++    
Sbjct: 673 SSIGQVATQFVTQNPTQLSKDIRSLKQVTSPAVSILRRGENEPPSKDEPSPNALEQA 729



 Score = 44.5 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 22/96 (22%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++   + H +KG E+  V ++   +                           P  K    
Sbjct: 777 KIECQSFHASKGKEADYVVIMGMKTG----------------------MHGFPSMKITPP 814

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           I+   +   +     E  RL YV +TRA  +  +  
Sbjct: 815 ILDAFLPKTEAFEFAEERRLFYVALTRAKHRAYVIA 850


>gi|71908176|ref|YP_285763.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
 gi|71847797|gb|AAZ47293.1| UvrD/REP helicase [Dechloromonas aromatica RCB]
          Length = 553

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 86/596 (14%), Positives = 171/596 (28%), Gaps = 117/596 (19%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-----LTL 129
           T+    + + + +    + P     +    D    ++DR      F+             
Sbjct: 41  TEMLAQRADFLLRTGICRYPQRILAISFKVDASRNLKDRVRRRCGFELAARLDSHTFHAF 100

Query: 130 AKYLNAHYEEAKKKNCVLD----------------FEDLIINTNDLLKKRDVSAWIRYKI 173
           AK L   +         LD                FED++     +L+  +V+   R  +
Sbjct: 101 AKRLIDRFRPVLTGRNALDPDYSIGSPRVQGRQIDFEDMVPLAVQILQSSEVA---RNAV 157

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            Q  +H+ +DE QD +  Q+++IR              +   L AVGD KQ I  + GA 
Sbjct: 158 RQTYSHVFLDEFQDCTDPQYQLIR---------IAFLGTGIPLTAVGDTKQRIMGWAGAL 208

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                      Q            + L  +FRS   +  + + +  I +    + +    
Sbjct: 209 EGVFQAFAEDFQAL---------PLNLYQNFRSQPRLRRMQNAMVKIMDPKAAVPDSEL- 258

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                    G+ G+V +     SQ +                          A  +A  I
Sbjct: 259 --------AGKGGSVDVLAFADSQTE--------------------------AEALADLI 284

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-L 412
              I  + +            +I VLV K  D  L             +          L
Sbjct: 285 QAWIADEGM---------PPSEIAVLVSKLPD--LYADRLMAELASRHLPFRNEQNLQDL 333

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-FNFSEDDIFKICTQRHETETVYEYIQ 471
           +   A + ++     +  + +  ++  ++   L     ED  +++  + +          
Sbjct: 334 SVEPAARLIVDFLSVVAGEREPDAYGRLMDVLLATGVDEDTAYELRARWNRHIDGARNQV 393

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
           +           ++K     + +    +                      GN + +V+ +
Sbjct: 394 REEGPVAHNAAALLKLADSFLALLGREALAALSAD------------YERGNRLDEVIAQ 441

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
            LN           +   L                +  + VRIMT+H +KGLE   V ++
Sbjct: 442 TLNRITDLLALDTDTAGALSRF-------------SEDSAVRIMTIHKSKGLEFDSVIML 488

Query: 592 DTGSQVFSHKHI--KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
               Q F  K    +    +        + + +   + R           +    E
Sbjct: 489 GIEEQTFFGKRADERSAFFVGISRAKRRLYLTVANHRERPEGYRRRWDEARSPLVE 544


>gi|300814891|ref|ZP_07095122.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300510981|gb|EFK38250.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 330

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 106/329 (32%), Gaps = 38/329 (11%)

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
              S+  N     +    K    EE  R+LYV MTRA D+LIIC       EKK +  ++
Sbjct: 22  AIDSQRSNGKFDLINNEQKDINFEEERRVLYVAMTRARDRLIICS------EKKQSPASY 75

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             ++       + V   +    +  +E      + +         E    +      I  
Sbjct: 76  MSILNAPDKFFKEVNIDEEEYQVKINEDTRKLINLN---------EAFKYRYRQNYSITD 126

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
            L      D                   L+          RG ++H   +          
Sbjct: 127 FLNYDYDEDAYLMKFFFNRDAKK-----LQGNTYYIDPKVRGNMLHFFAEHYNDEKIDDY 181

Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
             F+     ++       E + L+++   + +  ++        Y E+      N     
Sbjct: 182 IEFLFKIFKEDINGNKFNEIRELIVNYLNMRDKEIL--------YKELEFFYDFN----G 229

Query: 862 IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
            I+ G IDQ+   +  I+I + KT        E +   +  QL  Y K+ K+ Y  K + 
Sbjct: 230 HIVRGFIDQVVYDEG-IYIVDLKTS---DLSEEELVKNYKWQLVFYSKVFKNIY-KKEVK 284

Query: 922 CLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
              IY S      +P    +K   E+  K
Sbjct: 285 GAYIY-SLKHCKKVPVEINDKIINELDEK 312


>gi|183598401|ref|ZP_02959894.1| hypothetical protein PROSTU_01795 [Providencia stuartii ATCC 25827]
 gi|188020579|gb|EDU58619.1| hypothetical protein PROSTU_01795 [Providencia stuartii ATCC 25827]
          Length = 684

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 94/247 (38%), Gaps = 33/247 (13%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK----KSQDEFIKIRD 112
           +Q +   E  +    + + +    +   I+++I  +       ++      ++      +
Sbjct: 320 AQAKGWREWLTEELQWDVPEGEFWKDEKISKKIVSRLERWLSLMRMHGGSQKEMIESADE 379

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +F      +     L L   L   ++ A K    +DF  LI    +LL+K         +
Sbjct: 380 QFRDLFQKR-----LRLMSPLLKAWKSALKDEGAIDFSGLIHQAVNLLEK--------GR 426

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QD S ++ +++++L +         +   +LFAVGD+ Q+IY F GA
Sbjct: 427 FISPWKHILVDEFQDISPLRAKLLQALRQ--------QNKQTSLFAVGDDWQAIYRFSGA 478

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E       ++           + ++  L +++R    I  + ++             +S 
Sbjct: 479 ELDLTTSFEQNF--------GEGALCALDITYRFNQRIGEIANRFILQNPTQLDKPLNSL 530

Query: 293 TTIRHRS 299
                +S
Sbjct: 531 VKGNKKS 537



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 113/355 (31%), Gaps = 42/355 (11%)

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD----ILVLVRKRKDTPLITF 391
             +      ++++I   +   +    +    +K +I++ D     L   R R  +PL+  
Sbjct: 339 EGEFWKDEKISKKIVSRLERWLSLMRMHGGSQKEMIESADEQFRDLFQKRLRLMSPLLKA 398

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML---------- 441
               LK++  I   G     +      + +      ++ +  D+S +             
Sbjct: 399 WKSALKDEGAIDFSGLIHQAVNLLEKGRFISPWKHILVDEFQDISPLRAKLLQALRQQNK 458

Query: 442 KSPLFNFSEDDIFKICTQRHETE---TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
           ++ LF   +D          E +   +  +   + A C +       + I E+ +     
Sbjct: 459 QTSLFAVGDDWQAIYRFSGAELDLTTSFEQNFGEGALCALDITYRFNQRIGEIANRFILQ 518

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
           +P      +    KG ++ +          L+   +        + + L        +  
Sbjct: 519 NPTQLDKPLNSLVKGNKKSVVLLYENA---LERLFDKMSGYVTENETILCLARYHYLRPE 575

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              K        ++  MT+H +KG ++  V +    S                       
Sbjct: 576 ILNKAQTRWPKLKIEFMTIHASKGKQADHVIICGLNSGK--------------------- 614

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
               P +   + +   L+   ++    E  RLLYV MTRA  Q+ +  + +  +E
Sbjct: 615 -DGFPAAARESIMEQVLLPKHEEFEHAEERRLLYVAMTRAKQQVWLLYNPDEPSE 668


>gi|313107801|ref|ZP_07793975.1| hypothetical protein PA39016_001140002 [Pseudomonas aeruginosa
           39016]
 gi|310880477|gb|EFQ39071.1| hypothetical protein PA39016_001140002 [Pseudomonas aeruginosa
           39016]
          Length = 558

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 94/634 (14%), Positives = 200/634 (31%), Gaps = 108/634 (17%)

Query: 28  VSDINKYVSLSMETGNPTILK-KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ--KNI 84
           V        L++E       K +  +L   +     +       + FL +    +  K I
Sbjct: 4   VDAWKPADGLTLEPNALRAAKEQMHSLALTAGPGAGKTEMLAQRADFLLRTGACRYPKRI 63

Query: 85  ITQEIN-KKSPDLKEKLK-----KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
           +        S +LKE++K     +    F          ++       LT    L+A Y+
Sbjct: 64  LAISFKVDASSNLKERVKRRCGSELASRFDSYTFHAFAKRIIDRFRPVLTGEYALDAGYK 123

Query: 139 EAKKK----NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
            A +K      +++F DL+     +L+K +++   R  I Q  + + +DE QD + +Q+E
Sbjct: 124 IADRKPGPSRSLIEFADLVPLAIQILQKSEMA---RNAIRQTYSDVFLDEFQDCTNLQYE 180

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++   +D         +   L AVGD KQ I  + GA                      
Sbjct: 181 LLKLAFQD---------TSIRLTAVGDTKQKIMGWAGALDGIFQTFSADF---------A 222

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
            + + +  +FRS   +L + +++  + + A  + ++           +G  G V  W   
Sbjct: 223 ATPLNMYRNFRSKPRLLRLQNEIIRVLDPASVMPDEQL---------VGDEGEVFAWRFE 273

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
            S+ +                          A  +A  I   I T+          +   
Sbjct: 274 DSRKE--------------------------AEYLADLIDGWIKTEQ---------LPPA 298

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQED 433
           +I +L+   K   L             I      +   +T   A + ++     +  Q +
Sbjct: 299 EIAILIS--KQLDLYADHLMVALEARGIPFRNEQQMQDITVEPAARLIVDYLSCLYGQRE 356

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
             +++ ++              +     + ++              K   +   + E   
Sbjct: 357 PKAWIRLMN-----------QLVPFADEDIQSNARKDLDRLIKQQRKEAAIADLVAE--- 402

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                   +F  + L               E  + L E +  T    +       +L   
Sbjct: 403 --PSSGWWEFVRVFLKQISLETLVALSPDYESHERLKEVVRNTRTRIEELLKLEPDLPKA 460

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM--HIMPS 611
           LE++              VRI+T+H +KGLE   V ++   +++F     +    + +  
Sbjct: 461 LERFSDDQ---------AVRILTIHKSKGLEFDSVIIMAVENEIFFGNQAENRCAYFVGV 511

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
                 + +     + R    +      + +  E
Sbjct: 512 SRAKRRLVLTHADQRERPAGYTKRWDTHRSAQTE 545


>gi|227554837|ref|ZP_03984884.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis
           HH22]
 gi|227176006|gb|EEI56978.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis
           HH22]
          Length = 374

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/218 (19%), Positives = 80/218 (36%), Gaps = 22/218 (10%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-TQRHETE 464
                   D   IKD++A    I + +D +SF  ++  P     +  I K+         
Sbjct: 1   MVGGHKFYDRKEIKDILAYLSLIANPDDSISFERIVNEPKRGIGKSSIEKLRLFADTHGW 60

Query: 465 TVYEYIQ-----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
            + E  Q       +     +  +    I +L     + +  +     L     R+  ++
Sbjct: 61  ALLEAAQNVDLANISGKAGKELGNFGMMIQDLTKTVPYLTITELVKETLQRSGYREALMA 120

Query: 520 RFGNE---VIDVLDEFLNFTLRNEQN-----------SYSSLQELISELEQYPPTIKRAH 565
           +   E    ++ LDEFL+ T   ++              + L + +++L           
Sbjct: 121 QNNLESQARLENLDEFLSVTQEFDKRFEAQNNDDPNGEETKLADFLTDLALVSDLDN--L 178

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             + ++V +MT+H AKGLE PVVFL+     VF     
Sbjct: 179 EESSSQVTLMTLHAAKGLEFPVVFLMGLEEGVFPLSRA 216


>gi|241662649|ref|YP_002981009.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240864676|gb|ACS62337.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 587

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 78/646 (12%), Positives = 164/646 (25%), Gaps = 167/646 (25%)

Query: 61  CIEERFSLLSSFFLTQKFTPQ-------KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            +  R  L S    T   T          ++ T+   K+  +  ++   S D   ++   
Sbjct: 101 PLARRAELFSGALCTYPKTCSLVRRRTGVSLNTKGERKRLLEFFDRCNGSDDVAARLVQD 160

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                 F      L   + +   Y++  ++   +DF  ++     L     +        
Sbjct: 161 --AGSGFACYAGMLAELRKIRRAYDKRMERAGAIDFSTMLTRAIPLCDTASLP------- 211

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
                H+L+DE QD +  Q  ++  L                +   GD +Q+IY F G  
Sbjct: 212 ---FKHLLVDEAQDMTDDQMRLLAGLAR----------RIPNVMVFGDPRQAIYGFLGGH 258

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
              +    R               + L  SFR TA    + + +        G     T 
Sbjct: 259 AGNLRDALRD-----------AVTMPLSRSFRLTAQNAALANAILGGDNPVVGTRHGVTP 307

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
           ++   +                                         SA +    +   +
Sbjct: 308 SLHRCA-----------------------------------------SAIVQEDAVVDLV 326

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +              +    I VL R +  T L+        ++    V       L 
Sbjct: 327 RKLKSQG----------VTGNQIAVLARTKAQTRLVEKALLAAGHEIH-PVH------LP 369

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
                 D   L   +      ++       P   +    + +I  +              
Sbjct: 370 REPEHAD--RLLDMLTLALTCIATAKAGNKPNRKWRARRLAEIVGK-------------- 413

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                ++    +  + +   +  F   +     I        + +   G  V ++  E  
Sbjct: 414 -PIPANRLAPCLLMLKKAAPVPSFQGCYTVAMRI------YLRLMREPGKPVTNIAAELG 466

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            +  +   + + ++Q L S +E                V + ++H AKG E   V ++  
Sbjct: 467 RW--QPIASKFKTVQALRSHIETLRAQAP---------VVLSSIHAAKGGEWDHVIVLGV 515

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                                                      +    +   E  RL YV
Sbjct: 516 TDGSIP-----------------------------------FYRATDSNQIAEERRLFYV 540

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +TRA  +L +          +        ++  +     +  +  
Sbjct: 541 AVTRARKRLHLFHAPFHHAPSRQAFTERSRLLTPAVMASLQQAEQP 586


>gi|71280181|ref|YP_269170.1| helicase IV [Colwellia psychrerythraea 34H]
 gi|71145921|gb|AAZ26394.1| helicase IV [Colwellia psychrerythraea 34H]
          Length = 1042

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 24/211 (11%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
           T  +L L K + + YE+   ++  +DFED+I      ++          +      +I++
Sbjct: 597 TEKALALLKPILSAYEQHLAQHHEIDFEDMINKALTYVQ--------AGQFKSPWRYIMV 648

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD S  +  ++++L +        ++   ++FAVGD+ Q+IY F GA+     +   
Sbjct: 649 DEFQDISEPRARLVKALRD--------NNKECSVFAVGDDWQAIYRFSGADVTLTTQFSN 700

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                        +  EL  +FR    I  V     S           S   +   +  +
Sbjct: 701 YF--------GSTTQSELDQTFRFNNQIGKVATDFISKNPAQITKKITSLKQVNAPAVSL 752

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            +    Q   +     D   N   +   +  
Sbjct: 753 LKRDNSQFRSRKTGLIDEMANGAIDDVLAAI 783



 Score = 46.5 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 22/101 (21%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +   + HT+KG E+  V +V                               P  K    +
Sbjct: 821 IDAQSFHTSKGKEADYVIIVGLKKGA----------------------HGFPSEKVTPAL 858

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
              L+   +K    E  RLLYV +TRA D++ I      SN
Sbjct: 859 NEALLAKKEKFPYAEERRLLYVALTRAKDRVYIIADMTESN 899


>gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
 gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM
           17241]
          Length = 866

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/447 (12%), Positives = 122/447 (27%), Gaps = 77/447 (17%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +       +        +D+ +  ++             + ++ A +     E     + 
Sbjct: 102 TVHSFCARMLRETPAARTDLGRDFTVCDAA------DALEIVRLAVERTLGREIDGRSAQ 155

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L      +  ++ +     +          +++  +I          K          
Sbjct: 156 ILLDFIGLVKDAMLEEPARSHAEAAAAVFVSRREQVERICVDEQRRYDEKFFRFLAKYGA 215

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++   +N  LDF DL+I    LL+ R  +               +DE QD SL 
Sbjct: 216 SVARLYDQTLLENNTLDFSDLLIRAAALLRDRQTAQL----WTGRFRFAHVDEAQDVSLA 271

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           ++ ++  L                    GD  Q+IY + G++P          +      
Sbjct: 272 EYSLLSRLCSGAVT-----------LFCGDFNQTIYGWRGSDPAA---LAARFEADFHPV 317

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
             +F+I     ++RS++ +L V   +        G S  S ++ R               
Sbjct: 318 RVEFTI-----NYRSSSQLLAVGQNILKAAFGRGGGSRFSVSSPR--------------- 357

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                                   +    +    A  I  +I ++             + 
Sbjct: 358 -------------------CTDIVVRAFDTPEAEAAWILESIESL------------GIT 386

Query: 372 QAKDILVLVRKRKDTPLITFLT--RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 V+ R       +  L           +  +  D   L     +KD +A    + 
Sbjct: 387 DYTRAAVIARSNWACSELCELLCQGAHAARSPVRFMLADELRLFSRAEVKDALACIALLA 446

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI 456
           +  D  + + +L+       E     +
Sbjct: 447 NPRDGAAMLRLLRRHTAGVGEATARAL 473



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 59/219 (26%), Gaps = 39/219 (17%)

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
             +      + + +   + + ++       +  +   L        + F +      +  
Sbjct: 684 ARRAAYEKLLPRLEPFARLLADVRAKTAALAAPEAARLACRMFGLEEAFTAE--PARLAN 741

Query: 529 LDEFLNFTLRNEQ--NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           L+ F              +     + EL    P          N+V ++T H +KG E  
Sbjct: 742 LELFYGAADDYTDCTQPPARQLAALLELAALSPGALDRMRKTANKVAVITAHQSKGCEFD 801

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            VFL      VF                                      + L+    +E
Sbjct: 802 YVFLPMMQEGVFP-----------------------------------TWQALRSGALDE 826

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             R+ YV +TRA  +L +           +    +  M+
Sbjct: 827 EARVFYVSVTRAKKKLFVSWARGRRGRGPAGPSRFLTML 865


>gi|89074565|ref|ZP_01161037.1| hypothetical helicase IV [Photobacterium sp. SKA34]
 gi|89049669|gb|EAR55228.1| hypothetical helicase IV [Photobacterium sp. SKA34]
          Length = 693

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 23/284 (8%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
            +      +  ++      +            +   ++S     +   +       +++ 
Sbjct: 280 QIIAEVEKEKPNVAGVAIDARVRSAWIARMLIEQWNKSSSASKWQRHLTQWRVPGFSKEN 339

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF---NTYKMFKSTLASLTLAKYLNA 135
           T ++    +++        E L +S      + +         M     + L L      
Sbjct: 340 TMEQQAENEQLQAWVWRHIELLGQSILSKEALIEEIQNNKNPAMRPRMKSELELLWPCYQ 399

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++  K    +DF  +I      +K+         K       I++DE QD S  +  +
Sbjct: 400 AYQQYLKLKKQIDFNSMIDVATQYVKE--------GKFLSPWRFIMVDEYQDISPQRLAL 451

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I +L       K+T     TLFAVGD+ Q+IY F GA+       +              
Sbjct: 452 IEALCGQKIEAKST----PTLFAVGDDWQAIYRFAGADVNLTTDFEGRF--------GSS 499

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            I EL  ++R  + I  V +       +       S T    ++
Sbjct: 500 HITELSTTYRFNSMIGEVANLFIQQNPSQIKKQLTSFTKQSKKA 543



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 26/191 (13%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                I E+ ++    +P      +    K  ++ ++   ++++  L +        +  
Sbjct: 509 RFNSMIGEVANLFIQQNPSQIKKQLTSFTKQSKKAVTLLDSDLM--LQDLTRLAKLYDNK 566

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
             S +    +  ++               +  MT H +KG E+  VF+VD    +F    
Sbjct: 567 ETSVMILGRNNKQKPAKFEDWKAQWPQLNLVYMTCHASKGREADYVFIVDVNKGIFPSPD 626

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                       + + +    +  T  E  RL YV +TRA   +
Sbjct: 627 R------------------------ETGLAAVMQPRTENYTDAEERRLFYVALTRARKHV 662

Query: 663 IICKHSNTSNE 673
            +C  S+ ++ 
Sbjct: 663 WVCAGSHNTSS 673


>gi|291437395|ref|ZP_06576785.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
 gi|291340290|gb|EFE67246.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 648

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/294 (9%), Positives = 60/294 (20%), Gaps = 35/294 (11%)

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +         + +                    +        +              +  
Sbjct: 359 LAGPGAPEGTRPAGAPHPAPAEEAGRPGGTPRPRSAEETGAPRLTPEEARTVASWDRDLD 418

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
               E +       ++P     P     +E   L         +              RG
Sbjct: 419 ALAGELLHTRASVTEVP----LPASLTASELMRLAADPDGFARELARPMPRPPQPAARRG 474

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
              H  ++                +      +    E       I    +   +  A   
Sbjct: 475 TRFHAWVE--------------ARFEELTLPMLEPDELPGSTAEIADERDLQALKDAFER 520

Query: 844 D---SYSEVSVSGKINCPKKDIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHI 896
                 +   V           ++ GRID +            I ++KT      +    
Sbjct: 521 TEYAHRTPYRVEAPFQLSIAGRVVRGRIDAVYKEGDGDGATYEIVDWKTGRARTADP--- 577

Query: 897 PYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
                 QL++Y     +    P +S+    +YV   +V          A   + 
Sbjct: 578 -----LQLAVYRLAWAEQQGVPPESVGAAFLYVRTGEVERPDPLPDRAALERLL 626



 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 91/317 (28%), Gaps = 16/317 (5%)

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFT 536
           +F  +   + +L          D    +L       +  +          + L  FL+  
Sbjct: 2   RFARLAAELRDLRRCL-ADPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVA 60

Query: 537 LRNEQNS-YSSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                    ++L   +  L            A     N V+++T H +KGLE  VV +  
Sbjct: 61  ASFAAGDNEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPG 120

Query: 593 TGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
                F     ++       ++P         +    S     +     + +K+    E 
Sbjct: 121 LVRGTFPSGQGREKWTAQGKVLPHALRGDADTLPDITSWDSRGL-KAFHEAMKEHQHTEE 179

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY--DMVYDSFHNDERVKKIKLTNSIN 705
            RL YV  TR    L+   H    ++KK    + +   +          ++      + +
Sbjct: 180 LRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSAFLQALHEHCAAGYGEIEAWADEPAED 239

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
           ++    +  +       PL+ +   ++    + +   L     +  + P  ++       
Sbjct: 240 EENPALHRATDDRVWPLPLDDDALARRRAAAETVLAHLDHLAAHPDDHPTAVHDPDTYDD 299

Query: 766 GKTNLESLLSDNQTFNR 782
                     D    + 
Sbjct: 300 PDWPPPPDDEDAFPADF 316


>gi|304412485|ref|ZP_07394091.1| UvrD/REP helicase [Shewanella baltica OS183]
 gi|307307144|ref|ZP_07586882.1| UvrD/REP helicase [Shewanella baltica BA175]
 gi|304349127|gb|EFM13539.1| UvrD/REP helicase [Shewanella baltica OS183]
 gi|306910383|gb|EFN40814.1| UvrD/REP helicase [Shewanella baltica BA175]
          Length = 1004

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 83/237 (35%), Gaps = 19/237 (8%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           E+ K    L    K +  +   +   F      + T  +  L + +   YE+    N  +
Sbjct: 512 ELAKMFSQLIGLYKAACLDEHGLEGIFARAADTQQTRKAFELLEPILTRYEQHLTINGDI 571

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DFED+I      L+        R +       I++DE QD S  +  ++R+L +      
Sbjct: 572 DFEDMIGKALTYLQ--------RGQFISPWRFIMVDEFQDISEPRARLVRALRDSCAPQS 623

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                  +LF VGD+ Q+IY F GA+     +                +  +L L+FR  
Sbjct: 624 KAQ---ASLFCVGDDWQAIYRFSGADVSLTTQFTHYF--------GPTARNDLDLTFRFN 672

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           + I  V  +  +           S   +   +  I + G  +   +     ++    
Sbjct: 673 SSIGQVATQFVTQNPTQLRKDIRSLKQVASPAVSILRRGENEPPSKDEPSPNALEQA 729



 Score = 46.5 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 24/116 (20%)

Query: 553 ELEQYPPTIKRAHSANHNEVRI--MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
             +    T      A +  V+I   + H +KG E+  V ++   +               
Sbjct: 757 WFQLPDKTQVNQLKAKYPNVKIECQSFHASKGKEADYVVIMGMKTG-------------- 802

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                       P  K    I+   +   +     E  RL YV +TRA  +  +  
Sbjct: 803 --------MHGFPSMKITPPILDAFLPKTEAFEFAEERRLFYVALTRAKHRAYVIA 850


>gi|45187986|ref|NP_984209.1| ADR113Wp [Ashbya gossypii ATCC 10895]
 gi|44982803|gb|AAS52033.1| ADR113Wp [Ashbya gossypii ATCC 10895]
          Length = 708

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 91/581 (15%), Positives = 164/581 (28%), Gaps = 165/581 (28%)

Query: 151 DLIINTNDLLKK--RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           DLI      L       ++ I  ++  +   I++DEVQD   + + ++  +         
Sbjct: 184 DLIHFCAKFLADADPQTASGITGQLLNDYKVIIVDEVQDLYPLLFPMLELIAA------- 236

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS--IIELPLSFRS 266
                + L   GDE QSIY F G+         ++  K+ ++          EL  +FRS
Sbjct: 237 ----KKQLILFGDEHQSIYGFLGSN--------KLFMKQISSMRPAEKMFTYELYDNFRS 284

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           T +I+ +   V         L +                    L   +     +  +P +
Sbjct: 285 TPEIIDLAQSVMGRKMPPANLDQYGLHKK--------------LQCGIKPISFTLEDPLE 330

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           E                     +   I  ++              +  DI +L R  +  
Sbjct: 331 EL------------------CFLTDQICQLV----------CSSAKLSDIAILTRTNEHM 362

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIK---------DLMALGRFILSQE--DDL 435
             I            + + G     LT               D+M L   +  +E   D 
Sbjct: 363 DRIA---------RGLKIFGLPVEKLTAQPQWMNDPRILFLIDIMKLLAAVCQEEGATDE 413

Query: 436 SFVCMLKSPL---------FNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQH-- 483
           S    +K+                  I  I    R +  + +E I           +   
Sbjct: 414 SHNLKMKTDFSVVVTLGEGRRVGPSLINSIYNGARAKGTSCWELINSIEYRKSLPLRRQK 473

Query: 484 -VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG------------NEVIDVLD 530
            V  Y++ L  +       +   + L       Q I R               E  D L 
Sbjct: 474 IVATYLNALSPLLVRSKFQEL-NVPLDLMNELSQLIERMDIPLFQVQNEEQLQEFRDNLL 532

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-------ANHNEVRIMTVHTAKGL 583
           EF         +  + +  LI+   +                 +  N +++ T+H++KGL
Sbjct: 533 EFYQILKLCSYSRPADVP-LIAWFVKTFLEQTVQLQKNVVNKLSGRNTIKLSTIHSSKGL 591

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P+VFL+    +     +                                         
Sbjct: 592 EFPIVFLLGRLDKPVWSDN----------------------------------------- 610

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                  LYVGMTRA + L +   ++   +  +N    Y +
Sbjct: 611 -----NTLYVGMTRARNLLYMTNINHPKTKAITNNEHPYMI 646


>gi|239929058|ref|ZP_04686011.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 666

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/294 (9%), Positives = 60/294 (20%), Gaps = 35/294 (11%)

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +         + +                    +        +              +  
Sbjct: 377 LAGPGAPEGTRPAGAPHPAPAEEAGRPGGTPRPRSAEETGAPRLTPEEARTVASWDRDLD 436

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
               E +       ++P     P     +E   L         +              RG
Sbjct: 437 ALAGELLHTRASVTEVP----LPASLTASELMRLAADPDGFARELARPMPRPPQPAARRG 492

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
              H  ++                +      +    E       I    +   +  A   
Sbjct: 493 TRFHAWVE--------------ARFEELTLPMLEPDELPGSTAEIADERDLQALKDAFER 538

Query: 844 D---SYSEVSVSGKINCPKKDIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHI 896
                 +   V           ++ GRID +            I ++KT      +    
Sbjct: 539 TEYAHRTPYRVEAPFQLSIAGRVVRGRIDAVYKEGDGDGATYEIVDWKTGRARTADP--- 595

Query: 897 PYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
                 QL++Y     +    P +S+    +YV   +V          A   + 
Sbjct: 596 -----LQLAVYRLAWAEQQGVPPESVGAAFLYVRTGEVERPDPLPDRAALERLL 644



 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 91/317 (28%), Gaps = 16/317 (5%)

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFT 536
           +F  +   + +L          D    +L       +  +          + L  FL+  
Sbjct: 20  RFARLAAELRDLRRCL-ADPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDVA 78

Query: 537 LRNEQNS-YSSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                    ++L   +  L            A     N V+++T H +KGLE  VV +  
Sbjct: 79  ASFAAGDNEATLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPG 138

Query: 593 TGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
                F     ++       ++P         +    S     +     + +K+    E 
Sbjct: 139 LVRGTFPSGQGREKWTAQGKVLPHALRGDADTLPDITSWDSRGL-KAFHEAMKEHQHTEE 197

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY--DMVYDSFHNDERVKKIKLTNSIN 705
            RL YV  TR    L+   H    ++KK    + +   +          ++      + +
Sbjct: 198 LRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSAFLQALHEHCAAGYGEIEAWADEPAED 257

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
           ++    +  +       PL+ +   ++    + +   L     +  + P  ++       
Sbjct: 258 EENPALHRATDDRVWPLPLDDDALARRRAAAETVLAHLDHLAAHPDDHPTAVHDPDTYDD 317

Query: 766 GKTNLESLLSDNQTFNR 782
                     D    + 
Sbjct: 318 PDWPPPPDDEDAFPADF 334


>gi|153002775|ref|YP_001368456.1| UvrD/REP helicase [Shewanella baltica OS185]
 gi|151367393|gb|ABS10393.1| UvrD/REP helicase [Shewanella baltica OS185]
          Length = 556

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 83/586 (14%), Positives = 168/586 (28%), Gaps = 116/586 (19%)

Query: 29  SDINKYVSLSMETGNPTILKKAQT-LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
            +      L++E      +K+ +  L   +     +       + FL +  T +     +
Sbjct: 5   DNWKPADGLTLEPNAERAVKECEKNLALTAGPGAGKTEMLAQRADFLLRTGTCR---YPK 61

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            I   S  + +     +D     R   +       +      AK +   +         L
Sbjct: 62  RILAISFKV-DASSNLKDRVT--RRSGDELSSRFDSYTFHAFAKRIIDRFRPILTGIYTL 118

Query: 148 D----------------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           D                F DL+     +L+   V+   R  I Q    + +DE QD + I
Sbjct: 119 DSEYTIGSPRTPQKQIEFADLVPLATRILQSSAVA---RNAIRQTYTDVFLDEFQDCTDI 175

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E ++             S+   L AVGD KQ I  + GA     +   +  Q      
Sbjct: 176 QYEFLK---------IAFQSTTIRLTAVGDTKQKIMGWAGALDGIFVTYAQDFQAL---- 222

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + +  +FRS   +L + +++    + A  +                        
Sbjct: 223 -----PLNMYRNFRSKPQLLRLQNEIIRTLDPASVMPN---------------------- 255

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +            Q  ++   A  +A  I N I             I
Sbjct: 256 -------------ELIVGNEGEIRAFQFETSQREAEYLAEQIQNWI---------IVDNI 293

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILS 430
              +I +L+R      L          + +I          +T   A + ++        
Sbjct: 294 PPNEIAILIRN--QPHLYAQHLIPALRNRQIPFRNEQELQDITVEPAARLIVDFLLCTFG 351

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
           + +  +++ ++           +        E +   +    F      + +     I  
Sbjct: 352 KREPAAWLRLMN---------QLIPFTDDEEEQDKYQQIWLNFIQRQRKRIRENPITID- 401

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
             + +++ S   F  L+               + + +VL    N       +  + L+ L
Sbjct: 402 --NQSRWQSVQSFIELVGIETMTALSHDYETASRLNEVLRATFNKLDETLASGLTLLEAL 459

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                            +   VRI+T H +KGLE   V L+   ++
Sbjct: 460 CQF-------------TDDQSVRILTSHKSKGLEFDTVVLLGIENE 492


>gi|88602639|ref|YP_502817.1| DNA helicase II [Methanospirillum hungatei JF-1]
 gi|88188101|gb|ABD41098.1| DNA helicase II [Methanospirillum hungatei JF-1]
          Length = 387

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 122/407 (29%), Gaps = 72/407 (17%)

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L                A  N V +MT+H +KGLE PVVF+    +  F           
Sbjct: 12  LNHYANGAYDEQMDDDLAGLNAVNLMTMHQSKGLEWPVVFIPALVNGRFPS--------- 62

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                       +P+     +          +   E   +L+YV MTRA + L++   + 
Sbjct: 63  --AKTGREQRWLLPRDMFNVSRY--------EGDVEGERKLMYVAMTRAKELLVLSYFTT 112

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
            +  KK       D+             I++ +       ++        E       E 
Sbjct: 113 LNGRKKGVSEFIEDLADC--------PDIEVLSPFTHLPDLSLSQRGEDDEIQTFAAGEL 164

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
           I               P +  IN  +   P                 N     G  +H  
Sbjct: 165 I----------HYSKCPYRYRINTIWGFQP---------------GINPYLGYGNALHHC 199

Query: 790 LQVIFTLPEH--KRKNFITSYCTKN--AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
           ++    L +        + +   +N           + +   +   L +     A   D 
Sbjct: 200 MREAAELMKEGYDPVTAVATSVEENFFMPFADPGRAEGMRDVVMEKLIH--FAEARKDDM 257

Query: 846 YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT-HHHVPQEIEHIPYTHIAQL 904
                V  +I  P     ++G++D I    + I I +YKT    V +    +      Q+
Sbjct: 258 LRIREVETRIEYPLMQATVAGKVDVILHDNEGIEIRDYKTSDTVVTENDASM------QI 311

Query: 905 SIYEKILKDSYPNKSL-VCLLIYVSEPKVFIIP--QNKLNKA--FAE 946
            +Y + L      + +    + ++ +  V  +P  +  L KA   AE
Sbjct: 312 RLYARGLTAI--GEQVCSGSIAFLEDATVVPVPVSEEMLTKAEHLAE 356


>gi|309806223|ref|ZP_07700237.1| ATP-dependent deoxyribonuclease subunit A domain protein
           [Lactobacillus iners LactinV 03V1-b]
 gi|308167370|gb|EFO69535.1| ATP-dependent deoxyribonuclease subunit A domain protein
           [Lactobacillus iners LactinV 03V1-b]
          Length = 236

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 93/244 (38%), Gaps = 25/244 (10%)

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD KQSIY F  A+P   L++             +   I L  +FRS+ ++  +V+ +
Sbjct: 1   MVGDVKQSIYGFRQAQPHLFLQKYHQFSN-----EVQSERIILSDNFRSSKNVTQIVNNI 55

Query: 278 FSIP--ENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           F     EN  G++      +++ +      +GT   +    S  D      +E   +  D
Sbjct: 56  FDALLTENFGGINYQKEGRLQYGATYYPDDLGTSTEFIFSTSNDDKPSIADEEEEVNDLD 115

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSN---GKKRVIQAKDILVLVRKRKDTPLITF 391
            +            +   I  +   D    +     KR I+  DI +L R + +      
Sbjct: 116 EIN----------LVITRIKKLFKDDYQVYDVHSKLKRSIKFSDIAILTRTKSE----NL 161

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                  + K+ +  +D         +  +    + I + + D+  V +++SPL+ F+E 
Sbjct: 162 KLFQAFANAKLPLFVSDIQNYFKAFELVIITNYLKIIDNPQQDIPLVSVMRSPLYGFTEP 221

Query: 452 DIFK 455
           +  K
Sbjct: 222 EFAK 225


>gi|15128573|dbj|BAB62752.1| putative ATP-dependent exonuclease subunit A [Streptococcus
           criceti]
          Length = 495

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 83/255 (32%), Gaps = 29/255 (11%)

Query: 7   LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGN--PTILKKAQTLQQASQTQCIEE 64
           L+     +   K L     F    ++       ++      +    + L   +    +++
Sbjct: 241 LAPFLQEQDFGKILDQAQGFFRDHLSAVRGQFKKSYKYLANVENLLEALANVNLQAPLDQ 300

Query: 65  RFSLLSSFF--------LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
               L +          LT      K+   +         +        +  +       
Sbjct: 301 LQEQLQAVKAITSISRGLTMSIGSCKDESLKAFATDYNQERPNYLAPILDLERALSTVEA 360

Query: 117 YKMFK-----STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
            ++++                 +A Y E KK+    +F D+     ++L+  +    IR 
Sbjct: 361 LRIYQPQALPLLKVLQAFVLDFSAQYLERKKQENAFEFSDIAHLAIEILETDE---PIRQ 417

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
               + + +++DE QD + +Q  ++  L           S+    F VGD KQSIY F  
Sbjct: 418 LYQDKYHEVMVDEYQDNNHMQERLLDLL-----------SNGHNRFMVGDIKQSIYRFRQ 466

Query: 232 AEPKRVLREKRINQK 246
           A+P     + ++  +
Sbjct: 467 ADPMIFQAKFQVYDR 481


>gi|305665029|ref|YP_003861316.1| helicase IV [Maribacter sp. HTCC2170]
 gi|88709781|gb|EAR02013.1| helicase IV [Maribacter sp. HTCC2170]
          Length = 1024

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 106/333 (31%), Gaps = 27/333 (8%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +  +  L L + +   YE   K+   +DF D+I            ++ +  +      +I
Sbjct: 502 ERAILFLELYEPIFKSYESYLKELNEIDFSDMINLA--------TNSILNNQFTSPYKYI 553

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           +IDE QD S  ++++I+SL +              LF VGD+ QSIY F G++       
Sbjct: 554 IIDEFQDISQARYKLIKSLLD--------QKPDTKLFCVGDDWQSIYRFAGSDIGVFTGF 605

Query: 241 KRINQ-KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +  +        +  S   +  ++R    ++ +         N    +  S     +  
Sbjct: 606 SKYFKSSSIKGFKRTTSRSNIEYTYRFENKLIDLSSSFILKNPNQIKKTLKSHKKSNYSP 665

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCN-PQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                   V + +   ++ + +       +     +   + ++ S+L          ++ 
Sbjct: 666 --------VTIHKYRDAERNGKSAYQALNNALEIINEKEKSNNISVLLLGRYDFERRIVE 717

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                +      +   D +    +   T     +      +    V+ N         + 
Sbjct: 718 DSQNIAKKYNEQLNRYDYVFKGNQN-HTINFLTIHASKGLEADYVVILNGNSGTYGFPSE 776

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                L  F+LS+ D        +S     +  
Sbjct: 777 ISDDPLLNFLLSKADQFPNGEERRSFYVALTRA 809



 Score = 46.5 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 23/151 (15%)

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQEL-ISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
           E  + +   L      E+      Q +     EQ            ++ +  +T+H +KG
Sbjct: 696 EKSNNISVLLLGRYDFERRIVEDSQNIAKKYNEQLNRYDYVFKGNQNHTINFLTIHASKG 755

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE+  V +++  S                           P   S + +++ L+    + 
Sbjct: 756 LEADYVVILNGNSGT----------------------YGFPSEISDDPLLNFLLSKADQF 793

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              E  R  YV +TRA  Q+ I       ++
Sbjct: 794 PNGEERRSFYVALTRAKKQVHILSSHEYPSK 824


>gi|89092788|ref|ZP_01165740.1| helicase IV [Oceanospirillum sp. MED92]
 gi|89082813|gb|EAR62033.1| helicase IV [Oceanospirillum sp. MED92]
          Length = 952

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 24/203 (11%)

Query: 93  SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
              L   L K         +     K     +A+  L + +   YE+    N  +DFED+
Sbjct: 495 FSSLLSALLKQFKSAGSCLEALKNKKESPQLVAAAELLEPIIRRYEDHLAGNREIDFEDM 554

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           I      ++          +       IL+DE QD S  + E+++ L +           
Sbjct: 555 IHKAISYVED--------GRFKSHWKFILVDEFQDISFPRAELVKKLRDS--------RK 598

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
             ++F VGD+ Q+IY F G++        ++              I L  +FR    I  
Sbjct: 599 NTSIFCVGDDWQAIYRFTGSDVGLTTGFDQMFGA--------TKTISLDKTFRFNNKIGD 650

Query: 273 VVDKVFSIPENAQGLSEDSTTTI 295
           V  +      +       S   +
Sbjct: 651 VASRFVMKNPSQVKKEMHSHLHV 673



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 22/102 (21%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +  ++ H +KG E+  V +V   +                           P  K  + +
Sbjct: 739 ISQLSFHASKGKEADFVIIVGLDNGK----------------------HGFPSKKLTHPL 776

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           + +L+   ++  + E  RL YV +TRA  +  +      ++ 
Sbjct: 777 IEELLPKAEEYPEAEERRLFYVAITRAKHRCYLIADMTKASS 818


>gi|307719090|ref|YP_003874622.1| hypothetical protein STHERM_c14090 [Spirochaeta thermophila DSM
           6192]
 gi|306532815|gb|ADN02349.1| hypothetical protein STHERM_c14090 [Spirochaeta thermophila DSM
           6192]
          Length = 1008

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/388 (12%), Positives = 114/388 (29%), Gaps = 73/388 (18%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCI----EERFSLLSSFFLTQKFTPQKNIITQEINKK 92
             +        +  + L+  +  + +       ++        ++       +  E +++
Sbjct: 510 TVLAFTRKAAEEIRERLRGVAGGEGVWVGTFHAWAYECLVRFHREAGYGAPPVVLEGDER 569

Query: 93  SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
               +E  ++     + +       +  +       +   +   YE    +    D +DL
Sbjct: 570 RVVWEEACRRVGAGRVGLGRVERLKREGRRPEEVEGVVGEVWRVYEGLLAERGACDVDDL 629

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           ++    L+   +    +R  +  +   +L+DE QD +  Q+ ++  +           + 
Sbjct: 630 LLQAARLI---EGVEGVREWVRGQCRWVLVDEAQDLNAAQYGLLVRMA---------PTG 677

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
              +  +GD  Q+IY F GA    + R       R         ++ L  SFR  A++L 
Sbjct: 678 EGVVCMIGDPAQAIYGFRGASAGWMGRFVEEYGAR---------VVRLEESFRCPAEVLE 728

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
           V + V       +  +      +                                     
Sbjct: 729 VAEGVLGEGVGRRMRARGGGGRVS------------------------------------ 752

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR-----VIQAKDILVLVRKRKDTP 387
                + +S    A  IA  I   +G  T FS   +       +  ++I VL R      
Sbjct: 753 ---AWECASPESEAEFIARQIEQRLGGTTFFSFDSEVVEDEGGVAPEEIGVLCRTH---- 805

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDH 415
           L+  +      ++ I        +    
Sbjct: 806 LVMDVLEEAFRNHGIPYRRVGEGVRLSR 833



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 66/252 (26%), Gaps = 43/252 (17%)

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
              + ++I  +C      + + E  +          + V         +A+       + 
Sbjct: 791 GGVAPEEIGVLCRTHLVMDVLEEAFRNHGIPYRRVGEGVRLSRGARERLARVMGEGGVWE 850

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
              G   G          E + V +E +    R        L                  
Sbjct: 851 QAAGEVGGGVAREWGLEGEDLRVWEELVG---RFPHLPVRELVADCL------AGGMEGV 901

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                EV ++++H AKGLE  VVF+    + +                            
Sbjct: 902 EGRKGEVSLLSMHAAKGLEFDVVFIPACEAGLVPFSLFPTEGS----------------- 944

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                             +EE  RLLYV +TRA  ++++      + + +S        +
Sbjct: 945 -----------------DEEEERRLLYVALTRAKREVVLTMARRRTLKGRSLSGVPSPFL 987

Query: 686 YDSFHNDERVKK 697
                    +  
Sbjct: 988 AHLPWRPAPLPD 999


>gi|109898585|ref|YP_661840.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c]
 gi|109700866|gb|ABG40786.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c]
          Length = 957

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 109/370 (29%), Gaps = 63/370 (17%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
           K   TLQ+++    +   F  L   +   K         + +        + +   Q   
Sbjct: 530 KMLNTLQKSNYLSELAILFCQLIGLY---KSAISSKFSVKAVLADITSKGKAIDSQQARI 586

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
                               TL + +  HY++   ++  +DFED+I      ++K   +A
Sbjct: 587 A------------------FTLLRPIFQHYQKHLSQHAYIDFEDMISKAITYVEKGHFTA 628

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN-----------------TH 210
                      +I++DE QD S  +  ++RSL +                          
Sbjct: 629 P--------WRYIMVDEFQDISEPRARLVRSLRDSTRSVSALPRKNESVPSSREVLPRKQ 680

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
           S   ++F VGD+ Q+IY F GA+     +  +       N         L  +FR    I
Sbjct: 681 SQSASIFCVGDDWQAIYRFSGADVSLTTQFTQYFGHSIEN--------VLDQTFRFNNRI 732

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
             V  +  S        +  S   +     R+    T    E   S  +   +    +  
Sbjct: 733 GDVATQFISRNPAQITKNIRSLVKVADPRIRVLYSDTRLNSETQSSNTEKLLHQALATLA 792

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
              D + ++ +      +I  T                R      + +L R     P   
Sbjct: 793 GKVDEISEQHNKRGKTEKIRPT--------QSSKKDTLRQCSKPTVYILARFWFQLPDRE 844

Query: 391 FLTRFLKNDY 400
                L   Y
Sbjct: 845 G-LEALNKQY 853



 Score = 43.0 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 22/102 (21%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           ++ ++ H AKG E+    +    +                           P  K  + +
Sbjct: 858 IKCLSFHAAKGKEADYAIITGMTAGK----------------------HGFPADKVTSPV 895

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           V  L+   +  T  E  RL YV +TRA   + +      ++ 
Sbjct: 896 VEALLPKQETFTYAEERRLFYVALTRAKHHVYVLADMTQASA 937


>gi|183981387|ref|YP_001849678.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium marinum M]
 gi|183174713|gb|ACC39823.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium marinum M]
          Length = 709

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/503 (12%), Positives = 135/503 (26%), Gaps = 73/503 (14%)

Query: 6   GLSLNESYE-LIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL----KKAQTLQQASQTQ 60
            ++  +       +        ++  ++     S   G    L       + L+      
Sbjct: 63  HVAAGQVLAVTFTQRAAGEMRARLRGLDAAAQTSSGVGAVQALTFHAAAHRQLRYFWPRV 122

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             +  + LL S F        +  +         DL  +++ ++   I            
Sbjct: 123 VGDIGWQLLDSKFAVVARAAGRARLNASS-DNVRDLAGEIEWAKASLITPEQYPAAVAAA 181

Query: 121 KSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                        + A YE  K ++  L   D            +  A +  +       
Sbjct: 182 SRDTPLDAAQIAAVYAEYESLKVRDESLTLLDFDDLLLHTAAAIENDAAVAQEFRDRYRC 241

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++DE QD + +Q  V+ +   D             L  VGD  Q+IYSF GA P+ +L 
Sbjct: 242 FVVDEYQDVTPLQQRVLLAWLGD----------RDDLTVVGDANQTIYSFTGASPRFLLD 291

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             R             +++ L   +RST  ++++ ++V +                    
Sbjct: 292 FSRRFP--------DATLVRLERDYRSTPQVVSLANRVIAAARGRV-------------- 329

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                   +QL  Q         +   +                         I+ +I +
Sbjct: 330 ----AGSRLQLTGQREPGPAPSFDEYPDEVAEATAVAAS--------------IARLIQS 371

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T           A +I +L R    + +             I+          +   +K
Sbjct: 372 GTP----------ASEIAILYRVNAQSEVYEEALTE----AGIAYQVRGGEGFFNRQEVK 417

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPL--FNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
             M   +    ++ + +   ++++ L     + ++      +                  
Sbjct: 418 QAMVALQRAAERDIEAALPDVVRTVLEPLGLTAEEPAGTRARERWEALSALAQLVDDEVA 477

Query: 478 ISKFQHVIKYIHELIHIAQFCSP 500
                 +   + EL   A    P
Sbjct: 478 QRPHLQLAGLLAELRARADARHP 500



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 66/266 (24%), Gaps = 38/266 (14%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               E    Y+           + +  +  +          +  D    +L       + 
Sbjct: 393 EALTEAGIAYQVRGGEGFFNRQEVKQAMVALQRAAERDIEAALPDVVRTVLEPLGLTAEE 452

Query: 518 -ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                  E  + L            Q  +  L  L++EL                 V + 
Sbjct: 453 PAGTRARERWEALSALAQLVDDEVAQRPHLQLAGLLAELRARADARHPPVVQG---VTLA 509

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H AKGLE   VFLV          H                                L
Sbjct: 510 SLHAAKGLEWDAVFLVGLADGTLPISH-------------------------------AL 538

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDE 693
               +    EE  RLLYVG+TRA   L +      +    +      + + +      D 
Sbjct: 539 AHGPESEQVEEERRLLYVGVTRARVHLALTWALARSPGGRQGRKPSRFLNGIAPQTRADP 598

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHP 719
              K +      +      E +T   
Sbjct: 599 GPAKNRRNRGPVRCRICNKELTTPAA 624


>gi|160877520|ref|YP_001556836.1| UvrD/REP helicase [Shewanella baltica OS195]
 gi|160863042|gb|ABX51576.1| UvrD/REP helicase [Shewanella baltica OS195]
 gi|315269717|gb|ADT96570.1| UvrD/REP helicase [Shewanella baltica OS678]
          Length = 556

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 83/586 (14%), Positives = 168/586 (28%), Gaps = 116/586 (19%)

Query: 29  SDINKYVSLSMETGNPTILKKAQT-LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
            +      L++E      +K+ +  L   +     +       + FL +  T +     +
Sbjct: 5   DNWKPADGLTLEPNAERAVKECEKNLALTAGPGAGKTEMLAQRADFLLRTGTCR---YPK 61

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            I   S  + +     +D     R   +       +      AK +   +         L
Sbjct: 62  RILAISFKV-DASSNLKDRVT--RRSGDELSSRFDSYTFHAFAKRIIDRFRPILTGIYTL 118

Query: 148 D----------------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           D                F DL+     +L+   V+   R  I Q    + +DE QD + I
Sbjct: 119 DSEYTIGSPRTPQKQIEFADLVPLATRILQSSAVA---RNAIRQTYTDVFLDEFQDCTDI 175

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+E ++             S+   L AVGD KQ I  + GA     +   +  Q      
Sbjct: 176 QYEFLK---------IAFQSTTIRLTAVGDTKQIIMGWAGALDGIFVTYAQDFQAL---- 222

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + +  +FRS   +L + +++    + A  +                        
Sbjct: 223 -----PLNMYRNFRSKPQLLRLQNEIIRTLDPASVMPN---------------------- 255

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                        +            Q  ++   A  +A  I N I             I
Sbjct: 256 -------------ELIVGNEGEIRAFQFETSQREAEYLAEQIQNWI---------IVDNI 293

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILS 430
              +I +L+R      L          + +I          +T   A + ++        
Sbjct: 294 PPNEIAILIRN--QPHLYAQHLIPALRNRQIPFRNEQELQDITVEPAARLIVDFLLCTFG 351

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
           + +  +++ ++           +        E +   +    F      + +     I  
Sbjct: 352 KREPAAWLRLMN---------QLIPFTDDEEEQDKYQQIWLNFIQRQRKRIRENPITID- 401

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
             + +++ S   F  L+               + + +VL    N       +  + L+ L
Sbjct: 402 --NQSRWQSVQSFIELVGIETMTALSHDYETASRLNEVLRATFNKLDETLASGLTLLEAL 459

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                            +   VRI+T H +KGLE   V L+   ++
Sbjct: 460 CQF-------------TDDQSVRILTSHKSKGLEFDTVVLLGIENE 492


>gi|294140890|ref|YP_003556868.1| UvrD/REP helicase family protein [Shewanella violacea DSS12]
 gi|293327359|dbj|BAJ02090.1| UvrD/REP helicase family protein [Shewanella violacea DSS12]
          Length = 1018

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 18/168 (10%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              A L L +++   YE   +    LDF D+I    ++ +K D     + +      +I+
Sbjct: 559 RWKAFLHLFRWVITQYEAHLRSLKTLDFSDMISQGIEMTQKSDFHQRTQGRF--RYKYIM 616

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  + +++  L +         S    LF VGD+ Q+IY F G++ K      
Sbjct: 617 VDEFQDISAERAKLVTQLRDS--------SPGCALFCVGDDWQAIYRFTGSDLKLTTEFD 668

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
           R+             I+ L  +FR    I  V              + 
Sbjct: 669 RVFGAS--------RIVTLDKTFRFNDRIEKVASSFIQANPAQLKKTL 708



 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 22/97 (22%)

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           + H +KG ++  V ++D                              P   + + I+  L
Sbjct: 808 SAHGSKGKQADFVIVLDVNDDK----------------------YGFPSKIASDPILEAL 845

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
           +  L K    E  RL YV ++RA   + +       +
Sbjct: 846 LPKLDKYAYTEERRLFYVALSRAKQTVFVQAELGKES 882


>gi|330995858|ref|ZP_08319754.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
 gi|329574389|gb|EGG55960.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841]
          Length = 871

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 83/247 (33%), Gaps = 33/247 (13%)

Query: 48  KKAQTLQQASQTQCI---EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
                L++      +   E+    L    L     P+ +   +   +        +K S 
Sbjct: 438 DIRDKLRKLLAEAGVPIQEKTDEELYDLVL-----PKGSKQEKAFIRLVVTFVTLVKSSC 492

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
               ++  +       +S      + + +   Y  A   +  +DF D I+   ++ +   
Sbjct: 493 KSVKEVLKQAKNADDERSVFIIKNIFQPVYERYINALSDSNQIDFTDAILQATEICRTSH 552

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                        ++I++DE QD S+ ++  ++ L E         + P  L+ VGD+ Q
Sbjct: 553 PVE---------YDYIIVDEFQDISVDRYNFLKVLREG--------NPPAKLYCVGDDWQ 595

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY F G++     +                 I ++  ++R    ++++        +  
Sbjct: 596 SIYRFSGSDMALFNQFPEYFGA--------TEINKIETTYRFGEPLVSLSSNFIQRNKAQ 647

Query: 285 QGLSEDS 291
              +  S
Sbjct: 648 IQKNIHS 654


>gi|110679728|ref|YP_682735.1| helicase IV [Roseobacter denitrificans OCh 114]
 gi|109455844|gb|ABG32049.1| helicase IV [Roseobacter denitrificans OCh 114]
          Length = 916

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 108/334 (32%), Gaps = 31/334 (9%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
           FG+    + +     L   P+    +    +    +          +T     +   + +
Sbjct: 366 FGVRKRRTSDGTE-QLTTAPFVDRDEYLASMDWKRKVHTEHETVLIETYSWEREEGRLLD 424

Query: 65  RFSLLSSFFLTQKFTPQKNIITQ----EINKKSPDLKEKLKKSQD----EFIKIRDRFNT 116
             +   +  +T +  P   I  Q     +      L     +       +     D+ +T
Sbjct: 425 ALAEKLAPHVTLRPIPDIEIYDQVTQVGVVDGFSSLIGTFLRHFKNGGYQIDDCSDKAST 484

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            KM K   A L +   +   Y+        +DFED++I           +   R + +  
Sbjct: 485 LKMGKRADAFLKIFGAVFREYQNRLGDR--IDFEDMVIRA--------TAHVERGRYNSP 534

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             HIL+DE QD S  +  +I++L E     K        +FAVGD+ QSIY F G++   
Sbjct: 535 FRHILVDEFQDISTGRARLIKALKEQHADAK--------VFAVGDDWQSIYRFVGSDIHI 586

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS----EDST 292
           +         +          ++L  +FRS   I     +           +     ++ 
Sbjct: 587 MRNFGAEFGGQFAGITGIHRTVDLGRTFRSVDKIALASRRFVLRNPAQITKTVRAAGETD 646

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
                 +          L E + S  ++  +  Q
Sbjct: 647 QPAIQVAWTRRDNAENVLHETLASLTEASADGVQ 680


>gi|163733653|ref|ZP_02141095.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter
           litoralis Och 149]
 gi|161392764|gb|EDQ17091.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter
           litoralis Och 149]
          Length = 908

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 148 DFEDLIINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           DF+++I      L         +   R  + +    IL+DE QD    ++ +I ++    
Sbjct: 234 DFDNIITEAVGQLNGNGLSRSEAEAQRDSLIEGYRWILVDEYQDIGPEEYALISAVAGRS 293

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                      +LFAVGD+ Q+IY+F+GA    +   +   + R            L  +
Sbjct: 294 LE---DADLKLSLFAVGDDDQNIYAFNGASIDFIRMFEEDYKARPA---------FLIEN 341

Query: 264 FRSTADILTVVDKVFSIPENA----QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           +RSTA+I+   + V S   +       +  +   ++     R+     V      +    
Sbjct: 342 YRSTANIIEAANAVISKAPDRMKVDHEIRINEARSLGVPGGRLADADPVAQGRVQLLDVP 401

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                Q  +       L         AR  A    +      + +  + + +  +     
Sbjct: 402 GGDTHQAIAAVDEMIRLSHLDPNWNWART-AIISRDWKRLGPVRTYAETKGLNVEMANED 460

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
           +           L   L+N     +   D   + +       + L 
Sbjct: 461 LPNIWRLRETQTLITGLRNTRGALLGVQDILGILNEQDRNKWVDLL 506


>gi|86136250|ref|ZP_01054829.1| helicase IV [Roseobacter sp. MED193]
 gi|85827124|gb|EAQ47320.1| helicase IV [Roseobacter sp. MED193]
          Length = 951

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/368 (14%), Positives = 105/368 (28%), Gaps = 46/368 (12%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
           FG+   +S     + L   P+    +    +    +       +  +T    S  +    
Sbjct: 374 FGVRKEKSPIGFGEMLVTAPFVDRKEYLASMEWKRKIHASLETQLIET---YSYERQEGR 430

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFN------- 115
               L+      K  P   +  + I      + E   +            +F        
Sbjct: 431 LLEALAE-----KLGPHVTLRPRAIETIYDRVVEMGHIDSFTQLLGTFLLQFKGGSYTRA 485

Query: 116 -------TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
                     M +   A L + + +   Y+    +   +DFED+++     ++       
Sbjct: 486 GCQSKADRLNMGERGKAFLAVFEPVLRQYQIELGER--IDFEDMVLRAAGYVES------ 537

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                     HIL+DE QD S  +  ++ +L         T      +FAVGD+ QSIY 
Sbjct: 538 --GAYQSPFRHILVDEFQDISQDRARLVGAL--------KTQHGDARIFAVGDDWQSIYR 587

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F GA+   +                   +++L  +FRS   I     +           +
Sbjct: 588 FAGADIHIMRSFGSRFGGEFGPQKDIHQVVDLGRTFRSVDKIALAARRFVLQNPAQIEKT 647

Query: 289 EDSTTTIRHRSSR----IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                     + R           +L E + +  + +   +     +    L +      
Sbjct: 648 IIPAAEAEGPALRVVWTKRAKQENELLETLANLTEVRTEDRGSGKVASVLLLARYRHERP 707

Query: 345 LARRIAYT 352
               I   
Sbjct: 708 DMAAIGRK 715



 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 22/93 (23%)

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           T+H +KGLE+  V ++   +                           P   + + I+S +
Sbjct: 725 TIHGSKGLEADHVVILGCNNGK----------------------YGFPSEITDDPILSLV 762

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
               +     E  R++YV MTRA   + +    
Sbjct: 763 SPEGEPFQHAEERRIMYVAMTRARTTVTLLASE 795


>gi|161789260|ref|YP_001595635.1| UvrD-like helicase IV [Vibrio sp. 23023]
 gi|161761385|gb|ABX77031.1| UvrD-like helicase IV [Vibrio sp. 23023]
          Length = 861

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/235 (20%), Positives = 91/235 (38%), Gaps = 31/235 (13%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           E+ K    L +  K +  +   +          K T  +L L   L  +YE   K N V+
Sbjct: 397 ELAKLLGMLVDMYKAACLDENGVDTIIKESIDSKQTAKALELLMPLYTNYERYLKDNQVI 456

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKI-DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           DF D+I    +         +++  +      ++L+DE QD S  +  ++++L +     
Sbjct: 457 DFNDMIGKALN---------YVQTGLFQSPWKYLLVDEFQDISEPRARLVKALRDSNL-- 505

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                   +LF VGD+ Q+IY F GA+ +      +             S   L ++FR 
Sbjct: 506 ------GSSLFCVGDDWQAIYRFSGADVRLTTEFSKYF--------GPTSETTLDMTFRF 551

Query: 267 TADILTVVDKVFSIPENA-----QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            + I  +  +  +          + L++ S  T+     R  ++G   L + + S
Sbjct: 552 NSSIGDIATRFVTQNPIQLKKEIKSLTQVSNATVSLIRQRSDELGMTSLEKALTS 606



 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 22/89 (24%)

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KG E+  V ++   +                           P  K    ++  L+ 
Sbjct: 656 HASKGKEAEYVIVMGLNTGK----------------------HGFPSEKEIPPLLDALLP 693

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICK 666
              +    E  RL YV +TRA  ++ +  
Sbjct: 694 QGDRFKHAEERRLFYVALTRAKHRVYLLA 722


>gi|90407538|ref|ZP_01215720.1| superfamily I DNA and RNA helicase [Psychromonas sp. CNPT3]
 gi|90311348|gb|EAS39451.1| superfamily I DNA and RNA helicase [Psychromonas sp. CNPT3]
          Length = 969

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 24/221 (10%)

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
           + +K+     + +    L    K +  +     +   T +  K    + TL K L   Y+
Sbjct: 483 SLKKSGRISALAEIFTKLVSLYKSACLDAELEENIIKTAQDKKQMAKAFTLLKPLFKAYQ 542

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
                   +DFED+I      ++                 +I++DE QD S  +  ++++
Sbjct: 543 AHLLSRDEIDFEDMISKALMYIQSGQFKPS--------WRYIMVDEFQDISEPRARLVKA 594

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L ++            ++FAVGD+ Q+IY F+GA+                      +  
Sbjct: 595 LRDNC--------QGSSIFAVGDDWQAIYRFNGADVSLTTSFSHYFGH--------TTQT 638

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
           EL  +FR    I  V     S   +    +  +   +   +
Sbjct: 639 ELDRTFRFNNKIAQVATDFISKNPSQIYKTIIANDQVSLPA 679



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/394 (11%), Positives = 101/394 (25%), Gaps = 55/394 (13%)

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL-ARRIAYTIS 354
           +       +    +L          + + +  +    F  L     ++ L A      I 
Sbjct: 460 KLAKHLKNKHLECELLPPEAMLASLKKSGRISALAEIFTKLVSLYKSACLDAELEENIIK 519

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL------KNDYKISVVGND 408
                  +           K     +  R +      +++ L      +       +  D
Sbjct: 520 TAQDKKQMAKAFTLLKPLFKAYQAHLLSRDEIDFEDMISKALMYIQSGQFKPSWRYIMVD 579

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            F             L + +       S   +            I++         T + 
Sbjct: 580 EFQDISEPRA----RLVKALRDNCQGSSIFAV------GDDWQAIYRFNGADVSLTTSFS 629

Query: 469 YIQKFANCGI-SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG---------RQQFI 518
           +           +       I ++       +P   +  I+   +          ++   
Sbjct: 630 HYFGHTTQTELDRTFRFNNKIAQVATDFISKNPSQIYKTIIANDQVSLPAISLLCKRTLT 689

Query: 519 SRFGNEVIDV----LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN--EV 572
               N + ++    LDE L+   R      S                    +  +   ++
Sbjct: 690 LSTPNNIDEITNGALDEVLSAIARKANKPTSVYLLARFWFLLPDKLTLTRLNQRYPILKI 749

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           +  + HTAKG E+  V ++   +                           P SK+   I+
Sbjct: 750 QTQSFHTAKGKEADQVVIIGMKTGK----------------------HGFPSSKATPAIL 787

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
             L+   +     E  RL YV +TRA +++ I  
Sbjct: 788 DALLAKEETFEHSEERRLFYVALTRAKNRVYIIA 821


>gi|294010392|ref|YP_003543852.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
 gi|292673722|dbj|BAI95240.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S]
          Length = 605

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 79/569 (13%), Positives = 157/569 (27%), Gaps = 137/569 (24%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                  YE   ++  ++DF+DL++    L+ + D   W+   +  +   + +DE QD  
Sbjct: 174 LAAWAEGYEAELRRTGLIDFDDLVVFGQRLVSEHD---WVLPLLQAKFPVLAVDEYQDLG 230

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           +    +++ +  D             LFAVGD  QSIY F GA+   +            
Sbjct: 231 VALHRIVKRVAFD---------GGVRLFAVGDPDQSIYGFTGADGALLQDLAER------ 275

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                   ++L L++RS A I++  +         +    D    I       G  G   
Sbjct: 276 ---DDVERVQLRLNYRSAARIVSASEMALGEARGYRSNDPDRQAVIEFTQCADGLEG--- 329

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                               A  I   I   +      + G   
Sbjct: 330 ----------------------------------QAAHAIEEIIPAALAGKPGRALG--- 352

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                DI +L R  +   ++         D+           +     I+D  A      
Sbjct: 353 -----DIAILYRDYRAGDVVAEAVAAAGLDFVRVDTAAPYRKVALTSWIEDCAAWC---- 403

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                       +  L    +  +     +  E E   E  +        + +  I    
Sbjct: 404 -----AGGWREARPQLRGLLDRWLGFHRARIPEAEARDEAQRLTQLLWSLRVEEGIAR-- 456

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
                            +L A    +  ++  G +V                 +  ++  
Sbjct: 457 --------DFVAALRAGMLDALMAGEPSLADQGEQVNR-------------MTAALAVGG 495

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
            +++L+      +     +   + ++T+H+AKG E  VV +V         ++       
Sbjct: 496 ALADLDLASLGGR---DGSPLHLNLLTLHSAKGCEYDVVIMVGLDLGSLPWRNELP---- 548

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                           + + E  RL YVG+TRA D++ +     
Sbjct: 549 --------------------------------AARRESRRLFYVGLTRARDEIHMLYSGY 576

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
               +   +      + +     E  +  
Sbjct: 577 VDTARGRMRWGRSPFLDELEARMEEAEDE 605


>gi|301308960|ref|ZP_07214905.1| UvrD/REP helicase family protein [Bacteroides sp. 20_3]
 gi|300832986|gb|EFK63611.1| UvrD/REP helicase family protein [Bacteroides sp. 20_3]
          Length = 871

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 83/250 (33%), Gaps = 27/250 (10%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
              + L+   +   +       +   L     P  +   +   +        +K S    
Sbjct: 435 DIREKLKTLLEKADV--SIQEKTDAELYDMVLPPNSKHEKAFIRLVVTFVTLIKSSCKSV 492

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            ++  +       +ST     + + +   Y E       +DF D I+   D+ +      
Sbjct: 493 DEVLRQTKNAGDERSTFIIKNIFQPVYKRYIEELANINQIDFTDAILQATDICRSSHPV- 551

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
                   + ++I++DE QD S+ ++  ++ L E         + P  L+ VGD+ QSIY
Sbjct: 552 --------KYDYIIVDEFQDISVDRYNFLKVLREG--------NPPAKLYCVGDDWQSIY 595

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F G++     +      +          I ++  ++R    ++++  +     E     
Sbjct: 596 RFSGSDMALFNQFSDYFGQ--------TEINKIETTYRFGEPLVSLSSQFIQRNEAQIKK 647

Query: 288 SEDSTTTIRH 297
           +         
Sbjct: 648 NIHPFNPQVK 657



 Score = 42.2 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 22/102 (21%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              ++  +TVH +KGLE+  V ++                               P   S
Sbjct: 718 GDRKIEFLTVHKSKGLEADYVIILQCNKDT----------------------YGFPSLVS 755

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
            + +++ ++    +    E  RL YV +TRA  +  I     
Sbjct: 756 DDPVLNYVLTKSDQYPYGEERRLFYVAITRAKVKTYILYDRR 797


>gi|229185446|ref|ZP_04312628.1| Excision endonuclease subunit UvrD [Bacillus cereus BGSC 6E1]
 gi|228598034|gb|EEK55672.1| Excision endonuclease subunit UvrD [Bacillus cereus BGSC 6E1]
          Length = 637

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 65/453 (14%), Positives = 142/453 (31%), Gaps = 88/453 (19%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           L F  + I    LLK+  +   I   +    +H+ +DE QDT+  Q+ +++++  +    
Sbjct: 197 LTFSMISILVEYLLKENPL---IVKALQATYSHVFLDEFQDTTYNQYSLLKTIFLNSDTV 253

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    + AVGD KQ I  + GA        +              +   L  +FRS
Sbjct: 254 ---------ITAVGDNKQRIMGWAGALHNAFGIFESDF---------NATQHTLFNNFRS 295

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             +++++          A+ L++     +          G  ++W       +       
Sbjct: 296 APNLVSI------QNIFAKSLNDTPIEVLPVGEWNEND-GVCEVWNFKNHNTE------- 341

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A  +A  IS  + T+          ++ +D  +LV  ++  
Sbjct: 342 -------------------AILLASYISEWMKTE---------NLKPRDFCILV--KQQE 371

Query: 387 PLITFLTRFLKNDYKISVVGN-DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
            +         +   I      D   L     +  ++ + +    ++    ++ ++    
Sbjct: 372 HIYAAEIMKELSKINIKSRIEKDYQDLLSEEIVLLIIRILQLSYEEKSPELWMSVI---- 427

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
                D+I  I  +  + E +     +           ++K + E+ +        +F +
Sbjct: 428 -----DEIIDIKYRDVDPEKIKYLSIEN---------ELVKMLDEVRNRYSDIDVTNFNS 473

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
                 +  Q+ +   G + I       N      +     L +L     +         
Sbjct: 474 QF---TEILQEIVVFLGEDRIKATYPKYNQASYFNEVIQKMLDKLK-YQNRISMKELLQE 529

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 + IMT+H +KGLE   V  +      F
Sbjct: 530 FCGEFSIPIMTIHKSKGLEYHTVIFIGVEDAAF 562


>gi|302671265|ref|YP_003831225.1| UvrD/REP family ATP-dependent DNA helicase [Butyrivibrio
           proteoclasticus B316]
 gi|302395738|gb|ADL34643.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio
           proteoclasticus B316]
          Length = 603

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 84/543 (15%), Positives = 144/543 (26%), Gaps = 143/543 (26%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  V+ +   I  T  LL+K      +     +    ++IDE QDT+ + W  +++L   
Sbjct: 193 EKKVITYNGYISLTMYLLEKN---KELLNFYQKLFPVVVIDEFQDTNYLSWCFVKNLI-- 247

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   +    LF VGD  Q IY F GA PK +                    ++L  
Sbjct: 248 --------NDKTKLFFVGDPLQRIYGFIGAVPKLMDMA---------AYELNMVQMKLEK 290

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++R            F    +   L       IR  +                       
Sbjct: 291 NYR------------FKDNLSMLSL----DKNIRSNALNCKAP----------------- 317

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                 +     +L    S       IA  +++++  D+                +LV++
Sbjct: 318 ----IIYNDSIVNLHISDSHEKECEWIADNVASLLKNDSDQKTS-----------ILVQQ 362

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
           R        +     +   IS      F   D   +            Q D   +  + K
Sbjct: 363 RGAGI---DMIMEEFDQRNISYFYA-LFTDDDETYVSYHFDALEVFRKQIDRSRYHRVSK 418

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           S                      +   + +  +  I     VI  + +L           
Sbjct: 419 S---------------------VLDRTLSEIGSYYIGSSSKVIASLIDLTQ--------A 449

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
           FF  I+G                      FL+   +           +    E       
Sbjct: 450 FFEKIIGEY-------------------AFLSDDEKY--------TFICDTFENRALKQN 482

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                    V + TVH AKGLE   V + D     F +                G   + 
Sbjct: 483 MDAIDA--RVFVSTVHGAKGLEWENVIIPDMEPYCFPN-----------YYSLCGNCDFN 529

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
               S  N     I +       E   + YV +TRA   L+     +  N   + + +  
Sbjct: 530 TGRFSSGNYCKININNHDIDEFLEELSVFYVAVTRARKNLLFSASKSRYNNDGARKSSKV 589

Query: 683 DMV 685
             +
Sbjct: 590 SCL 592


>gi|294679145|ref|YP_003579755.1| ATP-dependent DNA helicase PcrA [Rhodobacter capsulatus SB 1003]
 gi|294477961|gb|ADE87348.1| ATP-dependent DNA helicase PcrA [Rhodobacter capsulatus SB 1003]
          Length = 605

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 84/568 (14%), Positives = 151/568 (26%), Gaps = 147/568 (25%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           R R +                     YE   ++  ++DF+DL+I    L+ + D   W+ 
Sbjct: 155 RHRRSILDRTSEAWTDEEELAAWAEGYEAELRRTGLVDFDDLVIFGQRLVSEHD---WVL 211

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +  +   + +DE QD  +    +++ +  D             LFAVGD  QSIY F 
Sbjct: 212 PLLQAKFPVLAVDEYQDLGVALHRIVKRVAFD---------GGVRLFAVGDPDQSIYGFT 262

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+   +                    ++L L++RS   I++  +         +    D
Sbjct: 263 GADGALLEELAER---------DDVERVQLQLNYRSATRIVSASEMALGEDRGYRSNDPD 313

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
               I       G VG                                       A  +A
Sbjct: 314 RQAVIAFLECDDGLVG-------------------------------------QAAHAVA 336

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I   +      + G        DI +L R  +   ++         D+          
Sbjct: 337 EIIPAALAAKPGRALG--------DIAILYRDYRAGDVVAEAVASAGLDFVRVDTAAPYR 388

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
            +     I+D  A                  +  L    +  I                 
Sbjct: 389 KVALTSWIEDCAAWC---------SGGWRKAQPQLRGLLDRWIGFH-------------- 425

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                            I +    A+  S       +   +   + F++     +   LD
Sbjct: 426 --------------RARISDAQASAELQSLTRLLWSLRVEEGLARNFVAALRAGM---LD 468

Query: 531 EFL----NFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             +    +   + EQ    S    +   L             +   + ++T+H+AKG E 
Sbjct: 469 ALMVDEPSLADQREQVERMSAAVAVGGPLADLDLASLAGRDGSPLHLNLLTLHSAKGCEY 528

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            VV +V         ++                                       + Q 
Sbjct: 529 DVVIMVGLDLGSLPWRN------------------------------------EAPAAQR 552

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNE 673
           E  RL YVG+TRA D++ +         
Sbjct: 553 ESRRLFYVGLTRARDEIHMLYSGFVDTR 580


>gi|118617994|ref|YP_906326.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium ulcerans Agy99]
 gi|118570104|gb|ABL04855.1| ATP-dependent DNA helicase II UvrD2 [Mycobacterium ulcerans Agy99]
          Length = 699

 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 62/506 (12%), Positives = 136/506 (26%), Gaps = 73/506 (14%)

Query: 6   GLSLNESYE-LIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL----KKAQTLQQASQTQ 60
            ++  +       +        ++  ++     S   G    L       + L+      
Sbjct: 53  HVAAGQVLAVTFTQRAAGEMRARLRGLDAAAQTSSGVGAVQALTFHAAAHRQLRYFWPRV 112

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             +  + LL S F        +  +         DL  +++ ++   I            
Sbjct: 113 VGDIGWQLLDSKFAVVARAAGRARLNASS-DNVRDLAGEIEWAKASLITPEQYPAAVVAA 171

Query: 121 KSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                        + A YE  K ++  L   D            +  A +  +       
Sbjct: 172 SRDTPLDAAQIAAVYAEYESLKVRDESLTLLDFDDLLLHTAAAIENDAAVAQEFRDRYRC 231

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++DE QD + +Q  V+ +   D             L  VGD  Q+IYSF GA P+ +L 
Sbjct: 232 FVVDEYQDVTPLQQRVLLAWLGD----------RDDLTVVGDANQTIYSFTGASPRFLLD 281

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             R             +++ L   +RST  ++++ ++V +                    
Sbjct: 282 FSRRFP--------DATLVRLERDYRSTPQVVSLANRVIAAARGRV-------------- 319

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                   +QL  Q         +   +                         I+ +I +
Sbjct: 320 ----AGSRLQLTGQREPGPAPSFDEYPDEVAEATAVAAS--------------IARLIQS 361

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T           A +I +L R    + +             I+          +   +K
Sbjct: 362 GTP----------ASEIAILYRVNAQSEVYEEALTE----AGIAYQVRGGEGFFNRQEVK 407

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPL--FNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
             M   +    ++ + +   ++++ L     + ++      +                  
Sbjct: 408 QAMVALQRAAERDIEAALPDVVRTVLEPLGLTAEEPAGTRARERWEALSALAQLVDDEVA 467

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDF 503
                 +   + EL   A    P + 
Sbjct: 468 QRPHLQLAGLLAELRARADARHPPEV 493



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 77/331 (23%), Gaps = 38/331 (11%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               E    Y+           + +  +  +          +  D    +L       + 
Sbjct: 383 EALTEAGIAYQVRGGEGFFNRQEVKQAMVALQRAAERDIEAALPDVVRTVLEPLGLTAEE 442

Query: 518 -ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
                  E  + L            Q  +  L  L++EL                 V + 
Sbjct: 443 PAGTRARERWEALSALAQLVDDEVAQRPHLQLAGLLAELRARADARHPPEVQG---VTLA 499

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H AKGLE   VFLV          H                                L
Sbjct: 500 SLHAAKGLEWHAVFLVGLADGTLPISH-------------------------------AL 528

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDE 693
               +    EE  RLLYVG+TRA   L +      +    +      + + +      D 
Sbjct: 529 AHGPESEQVEEERRLLYVGVTRARVHLALTWALARSPGGRQGRKPSRFLNGIAPQTRADP 588

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
              K +      +      E +T                  +     K        + N 
Sbjct: 589 GPAKNRRNRGPVRCRICNKELTTPAAVMLRRCETCAGDVNEELLLQLKSWRLNTAKEQNV 648

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
           P  +  +         L      +     G+
Sbjct: 649 PAYVVFTDNTLIAIAELRPADDASLIAIPGI 679


>gi|118469673|ref|YP_886318.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118170960|gb|ABK71856.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 716

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 67/467 (14%), Positives = 127/467 (27%), Gaps = 89/467 (19%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
              + LQ        +  + LL S F             Q       DL  +++ ++   
Sbjct: 109 AARRQLQYFWPRLVGDTGWELLDSKFSVVA-QAANRAGLQPSTDDVRDLAGEIEWAKASL 167

Query: 108 IKIRDRFNTYKMFKSTLAS-LTLAKYLNAHYEEAKKKNCVLDFED---------LIINTN 157
           I               +         + + YE  K +       D         L+++T 
Sbjct: 168 ITPEAYGAAVAKVGRDIPLDAQKVAAVYSGYEALKARR------DGSALLDFDDLLLHTA 221

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
             ++     A +  +        ++DE QD + +Q  V+ +   D             L 
Sbjct: 222 AAIEND---AAVAQEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGD----------RDDLT 268

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            VGD  Q+IYSF GA P+ +L   R             +++ L   +RST  ++++ ++V
Sbjct: 269 VVGDANQTIYSFTGATPRYLLDFSRRFP--------DAAVVRLERDYRSTPQVVSLANRV 320

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            +           + + +     R                                    
Sbjct: 321 IAGARGRM-----AGSKLHLVGQRDPGPKPT---------------------------FN 348

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +       A+ +A  I  +I   T             +I VL R    + +         
Sbjct: 349 EYPDEVAEAKGVAKAIQKLIEKGTA----------PAEIAVLYRINAQSEVYEEALTE-- 396

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE----DDLSFVCMLKSPLFNFSEDDI 453
               I+              I+  +   +    +E    D   FV  L  PL   + +  
Sbjct: 397 --AGIAFQVRGGEGFFSRQEIRQALVALQRAAEREVEITDLPVFVRELLEPL-GLTAEAP 453

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                +      V           +     +   + EL   A    P
Sbjct: 454 AGTRARERWEALVALAELVEEEVALRPELDLRALVGELRQRADARHP 500



 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 78/305 (25%), Gaps = 42/305 (13%)

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           Q ++          +      F   +L       +  +  G    +  +  +      E+
Sbjct: 417 QALVALQRAAEREVEITDLPVFVRELLEPLGLTAE--APAGTRARERWEALVALAELVEE 474

Query: 542 N----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                    L+ L+ EL Q               V + ++H AKGLE   VFLV      
Sbjct: 475 EVALRPELDLRALVGELRQRADARHPPVVQG---VTLASLHAAKGLEWDAVFLVGLADGT 531

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
               H                                          EE  RLLYVG+TR
Sbjct: 532 LPISHALSHGP-------------------------------DSEPVEEERRLLYVGVTR 560

Query: 658 ASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           A   L +           +      + + +     N                       +
Sbjct: 561 ARVHLALSWALARTPGGRQGRRPSRFLNGIAPQTENSSSGPDRPRRQRGPAPRCRICNAA 620

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
              P+   L R ET    +DE  + +     ++              DT      E+L +
Sbjct: 621 LSTPQAIMLRRCETCPSNLDEDLLAELKEWRLRVSKEMKVPAYVVFTDTTLMAIAETLPT 680

Query: 776 DNQTF 780
           D+   
Sbjct: 681 DDAAL 685


>gi|268590116|ref|ZP_06124337.1| helicase IV [Providencia rettgeri DSM 1131]
 gi|291314385|gb|EFE54838.1| helicase IV [Providencia rettgeri DSM 1131]
          Length = 683

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 24/185 (12%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI    ++L+K         +      HIL+DE Q
Sbjct: 388 IRLMAPLLKVWKSALKDEGAIDFSGLIHQAINILEK--------GRFISPWKHILVDEFQ 439

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S ++ +++++L +         +   TLFAVGD+ Q+IY F GAE       +     
Sbjct: 440 DISPLRAKLLQALRQ--------QNKQTTLFAVGDDWQAIYRFSGAELDLTTSFEHNF-- 489

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                     +  L  ++R    I  V ++             +S T    +S  +   G
Sbjct: 490 ------GIGELCALDTTYRFNQRIGEVANQFILQNPMQLDKPLNSLTKGNKKSVILLYEG 543

Query: 307 TVQLW 311
            ++  
Sbjct: 544 ALERL 548



 Score = 44.5 bits (103), Expect = 0.097,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 66/229 (28%), Gaps = 26/229 (11%)

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-HVIKYIHELIHIAQFCSPHDFF 504
                  I++      +  T +E+                 + I E+ +     +P    
Sbjct: 464 VGDDWQAIYRFSGAELDLTTSFEHNFGIGELCALDTTYRFNQRIGEVANQFILQNPMQLD 523

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +    KG ++ +          L+  L+       +  + L        +     K  
Sbjct: 524 KPLNSLTKGNKKSVILLYEGA---LERLLDKMSGYVLDDETILVLARYHYLKPNILDKAK 580

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  ++ MT+H +KG ++  V +    S                           P 
Sbjct: 581 TRWPKLNIQFMTIHASKGQQADHVIICGLNSGK----------------------DGFPA 618

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
               + I   L+   +     E  RLLYV +TRA  Q+ +  H    +E
Sbjct: 619 PARESVIEQALLPKPEDFDHAEERRLLYVALTRAKQQVWLLYHPEKPSE 667


>gi|293368534|ref|ZP_06615142.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f]
 gi|292636331|gb|EFF54815.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f]
          Length = 872

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 83/240 (34%), Gaps = 33/240 (13%)

Query: 48  KKAQTLQQASQTQCI---EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
                L++      +   E+    L    L     P+ +   +   + +      +K S 
Sbjct: 439 DIRGKLRKLLDDAGVPIQEKTDEELYDLVL-----PKGSKQEKAFIRLAVTFVTLVKSSC 493

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
               ++  +       +S      + + +   Y  A   +  +DF D I+   ++ +   
Sbjct: 494 KSVKEVLKQAKNADDERSVFIIKNIFQPVYERYISALSDSNQIDFTDAILQATEICRTSH 553

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
           +            ++I++DE QD S+ ++  ++ L +         + P  L+ VGD+ Q
Sbjct: 554 LVE---------YDYIIVDEFQDISVDRYNFLKVLRDG--------NPPAKLYCVGDDWQ 596

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY F G++     +                 I ++  ++R    ++++        +  
Sbjct: 597 SIYRFSGSDMALFNQFPEYFGA--------TEINKIETTYRFGEPLVSLSSHFIQRNKAQ 648



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 23/105 (21%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              ++  +TVH +KGLE+  V L+                               P   S
Sbjct: 722 GERKIEFLTVHKSKGLEADYVILLQCNKDT----------------------YGFPSLVS 759

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS-DQLIICKHSNTS 671
            + ++  ++    +    E  RL YV +TRA    L++      S
Sbjct: 760 DDPVLKYVLTKSDQFPYGEERRLFYVAITRAKMKTLVLYDKRFPS 804


>gi|145641650|ref|ZP_01797227.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021]
 gi|145273697|gb|EDK13566.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.4-21]
          Length = 310

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 54/312 (17%), Positives = 111/312 (35%), Gaps = 35/312 (11%)

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            +GD KQ+IY F GA+    L+     Q R            L  ++RS  +++  V+ +
Sbjct: 1   MIGDPKQAIYRFRGADIFTYLKASDEAQSRFE----------LTKNYRSEKNLVDGVNAL 50

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
           F  P++       + T +  R             + +    + +  P    + +  D + 
Sbjct: 51  FDFPQSPFIYQNINFTAVDSR------------DDHLRFYLNGKAEPAYRFYLTESDKVN 98

Query: 338 QESSASILARRIAYTISNMIGTDTIF-SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           +   A I A  I + + + +    +F +    + +QA +I VLVR + +  L+    + L
Sbjct: 99  KTEMAKICAISIQHWLKSAVENQAVFQNEDTCKTLQAANIAVLVRDKNEAALVKNELQKL 158

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                 SV  +D+  + D    K+L  + +  L+   +   +  + + LF  +  DI +I
Sbjct: 159 GIA---SVYLSDQNSVFDSNVAKELAWVLKACLNVA-ERPILNAIATALFGLNAADIHQI 214

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                      E   +      +++Q   +    L  + Q          +L    G + 
Sbjct: 215 QQN--------EADWQRWADSFAQYQQTWQRQGILAMLHQILLEQGISERLLSQATGERD 266

Query: 517 FISRFGNEVIDV 528
                       
Sbjct: 267 LTDFLHLGRNVN 278


>gi|154253843|ref|YP_001414667.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
 gi|154157793|gb|ABS65010.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1]
          Length = 604

 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 71/533 (13%), Positives = 141/533 (26%), Gaps = 137/533 (25%)

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +   ++D++D+++    L+ + D   W+   +  +   + +DE QD  +    +++ L 
Sbjct: 185 LRDEGLIDYDDMVVFGQRLIAEHD---WVLPLVQAKFPVLAVDEYQDLGVALHRIVKRLA 241

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            D             LFAVGD  QSIY F GA+   ++                   + L
Sbjct: 242 FD---------GGVRLFAVGDADQSIYGFTGADGALLMELAAR---------GDIEPVRL 283

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            L++RS   I+T  +         Q        TI       G                 
Sbjct: 284 QLNYRSGTGIVTASEMALGEVRGYQASDPARQATIEFVLRPGGM---------------- 327

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                A   A  +A  I   + +               DI +L 
Sbjct: 328 ---------------------ADQAAHVVAQIIPAALASKPGR--------TLGDIAILY 358

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           +  +   +++        DY           ++    ++D  A                +
Sbjct: 359 KDYRAGDIVSEAVTAGGLDYIRVDTAAPYRKVSLTSWVEDCAAWC---------AGGWRV 409

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            +  L    +  +           ++ +   +     ++               +     
Sbjct: 410 GRPQLRGLIDRYLAF------HRASLDDAQARREGQELTALL--------WALRSDQQPA 455

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            DF   +      R         +  + LD            +   +  L          
Sbjct: 456 RDFVASLRSGIVDRLLAAELALADQKEQLDRMTAALAEGGALATLDMTSLGGR------- 508

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  + + + ++T+H+AKG E  VV +V         ++                  
Sbjct: 509 -----DGSPDHLNLLTLHSAKGCEYDVVIMVGLDLGNLPWRN------------------ 545

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    E  RL YVG+TRA D++ +         
Sbjct: 546 ------------------ESPEKLRESRRLFYVGLTRARDEVHMLYSGFVEGR 580


>gi|325279852|ref|YP_004252394.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
 gi|324311661|gb|ADY32214.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712]
          Length = 872

 Score =  105 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 83/240 (34%), Gaps = 33/240 (13%)

Query: 48  KKAQTLQQASQTQCI---EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
                L++      +   E+    L    L     P+ +   +   + +      +K S 
Sbjct: 439 DIRGKLRKLLDDAGVPIQEKTDEELYDLVL-----PKGSKQEKAFIRLAVTFVTLVKSSC 493

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
               ++  +       +S      + + +   Y  A   +  +DF D I+   ++ +   
Sbjct: 494 KSVKEVLKQAKNADDERSVFIIKNIFQPVYERYISALSDSNQIDFTDAILQATEICRTSH 553

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
           +            ++I++DE QD S+ ++  ++ L +         + P  L+ VGD+ Q
Sbjct: 554 LVE---------YDYIIVDEFQDISVDRYNFLKVLRDG--------NPPAKLYCVGDDWQ 596

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY F G++     +                 I ++  ++R    ++++        +  
Sbjct: 597 SIYRFSGSDMALFNQFPEYFGA--------TEINKIETTYRFGEPLVSLSSHFIQRNKAQ 648



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 23/105 (21%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              ++  +TVH +KGLE+  V L+                               P   S
Sbjct: 722 GERKIEFLTVHKSKGLEADYVILLQCNKDT----------------------YGFPSLVS 759

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS-DQLIICKHSNTS 671
            + ++  ++    +    E  RL YV +TRA    L++      S
Sbjct: 760 DDPVLKYVLTKSDQFPYGEERRLFYVAITRAKMKTLVLYDKRFPS 804


>gi|228923836|ref|ZP_04087114.1| DNA helicase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228835965|gb|EEM81328.1| DNA helicase [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 641

 Score =  105 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 68/455 (14%), Positives = 132/455 (29%), Gaps = 89/455 (19%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           L F  +      LL+   V+ +I   +    +H+ +DE QDT+  Q+++++         
Sbjct: 201 LTFPMISRLAEYLLR---VNPYILSALQCTYSHVFLDEFQDTTNTQYDLLK--------- 248

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               +S   L AVGD KQ I  +  A         +             +  +L ++ RS
Sbjct: 249 TAFLNSDTILTAVGDNKQRIMGWANALNDATSDFIKDF---------NGTQNQLIMNHRS 299

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              ++ + + +         L++ S              G  ++W               
Sbjct: 300 APKLVEIQNVLAQRITENCSLAKVSNK-------WGELEGLCEIWAF------------- 339

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                              A  +A  IS  I T           +Q +DI +LV  ++  
Sbjct: 340 -------------EHYQKEADYLAEKISTWINT---------NGLQPRDICILV--KQQE 375

Query: 387 PLITFLTRFLKNDYKISVVGN-DRFILTDHLAIKDLMALGRFILSQEDDLSFVCM--LKS 443
            +         +   I      +   L     +   + +   +   E   +++ +  L S
Sbjct: 376 LIYGKSLISALSKKNIQARIEKEYQELLSEDCVHLFLNIFSILADAESSKAWLNIVSLLS 435

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            +    ++   ++     E +   E +Q+  N                       +    
Sbjct: 436 TIRGIQDNQNNEVFNLEIELQVFIEQLQRDINTF------------NFEKDTLCLNIEKV 483

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              I+               +    L   L            SL+  I+ +E        
Sbjct: 484 LRRIIDFIGDSNFKCYFPYYQKDKYLTAILQK---------FSLKLAIAYIETKDWYKAI 534

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                   + IMT+H +KGLE   V  V      F
Sbjct: 535 KEFLGDYSIPIMTIHKSKGLEYDTVIFVGLEDDAF 569


>gi|163748985|ref|ZP_02156236.1| superfamily I DNA and RNA helicase [Shewanella benthica KT99]
 gi|161331361|gb|EDQ02249.1| superfamily I DNA and RNA helicase [Shewanella benthica KT99]
          Length = 494

 Score =  105 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 18/178 (10%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           D+ +         A L L +++   YE        LDF D+I    ++ +  D     + 
Sbjct: 32  DKTSALYNQVRWKAFLHLFRWVITQYEAHLSSLKTLDFSDMISQGIEMTQASDFHQQTQG 91

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +      +I++DE QD S  + +++  L +         S    LF VGD+ Q+IY F G
Sbjct: 92  RF--RFKYIMVDEFQDISAERAKLVTQLRDS--------SPGCALFCVGDDWQAIYRFTG 141

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
           ++ +     KR+          +  ++ L  +FR    I  V              + 
Sbjct: 142 SDLRLTTEFKRVF--------GETRVVTLDKTFRFNDRIEKVASSFIQANPAQLKKTL 191



 Score = 43.0 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 22/97 (22%)

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           + H +KG ++  V ++D                              P   + + I+  L
Sbjct: 284 SAHGSKGKQADFVIVLDVNDDK----------------------YGFPSKIASDPILEAL 321

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
           +  L      E  RL YV ++RA   + +       +
Sbjct: 322 LPKLDDYAYTEERRLFYVALSRAKQTVFVQAELGKES 358


>gi|312898122|ref|ZP_07757514.1| putative ATP-dependent nuclease subunit B [Megasphaera
           micronuciformis F0359]
 gi|310620790|gb|EFQ04358.1| putative ATP-dependent nuclease subunit B [Megasphaera
           micronuciformis F0359]
          Length = 1152

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 121/1016 (11%), Positives = 259/1016 (25%), Gaps = 193/1016 (18%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSME--TGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            E  Y +      F  + I+ +  L+ +   G            +    + + + ++   
Sbjct: 62  AERRYAESLQGRGFMGTRISGFSRLARQVTQGGSGDTVVLNDFDKRLVLRRLADAWAPSF 121

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
           +        P           +        +  ++    +       K+   +L      
Sbjct: 122 TVLQQAMGQPGFAATASAFITECRSFGIDAETLKNAGKALETGVLKQKISDISL------ 175

Query: 131 KYLNAHYEEAKKKNCVLDFE---DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             L   Y+E  +      F    DL+      L +                +I ID  Q 
Sbjct: 176 --LYEKYDEYLQTR----FGSTRDLLT----ALAEDACRDEFLQG-----AYIWIDGFQW 220

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            +  Q +VI++L         T +         D +Q   + H    +      R+    
Sbjct: 221 FTPQQMQVIQALARCAEETVITLTMNPDAL---DGQQRETALHRRAYEAYESLCRLFPAV 277

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
              A    +   L   FR         D  FS     Q  S +    ++  +        
Sbjct: 278 HVRAVGDSAYSTLRA-FR---------DDFFSTVPKFQDASVEGIRAVQCNTRHE----- 322

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                                  R +A  I +++       +  
Sbjct: 323 -------------------------------------EVRYVAGQICHLLRQGRRLKDIT 345

Query: 368 ---KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
              +       I   V      P  T   R +     +  V   R IL  HL    L  L
Sbjct: 346 VITRTSDPYNRICKQVFAEYGLPCFTDYRRPMTTHPYVEAVTAVREILFSHLNNDALFRL 405

Query: 425 GRFILSQE-----DDLSFVCMLKS--PLFNFSEDDI----FKICTQRHETETVYEYIQKF 473
            +  L        DDL    +     PL    ++D      ++  +  +   + +  ++ 
Sbjct: 406 LKTDLLPFSRREVDDLENYSLAAGIRPLRWLKDEDFTYMPERLRNRCGDLSYINDIRRRI 465

Query: 474 ANCGISKFQHVIKY--IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV--- 528
            +     F    +   ++E   I    +       +L + +   +   R   E  +    
Sbjct: 466 FHIMEPLFPFRGEKKSLYEWAGILWQWTYDTQMQSLLASWQEEAEAEGR-QEEAREHEQV 524

Query: 529 ---LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
              +   L   +    N   S +E    LE+     +        + + + ++     + 
Sbjct: 525 SKKVTALLTRMVELCGNDEISGKEFCDLLEEGLAESEFTLIPPTLDRITVTSIDRGYTMR 584

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
           SP+VF+      VF             ++      +   +     N    L    +  T 
Sbjct: 585 SPIVFVCGVNDGVFP------------VHYGEDGLLNDKERNFLKNCGLPLGPDSRFKTF 632

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           +E     Y+ +TRA + L I         +      W  ++ +  +         +T   
Sbjct: 633 QE-RFFFYLALTRADEYLHITWSLADEGGEALMPSPWVGLLVNRGYVKAESDTGTITVKN 691

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP---------- 754
             D  +    + H   +     ++  +       +         +D              
Sbjct: 692 RADYLVNARAALHFLPSALRSAKDGKRIDDIWWALYDWALLNGYDDSVHTIGAGLFYNSR 751

Query: 755 ----------------YILNPST--IDTKGKTNLESLLS-----------DNQTFNRGLI 785
                             L  S   ++   K                   D    + G +
Sbjct: 752 AQDLSKGLIESLFLKNKTLRGSVTLLEAYRKCPFAFFAKYGLKLKERQEYDFAAPDLGTL 811

Query: 786 IHKLL----QVIFTLPEHKRKNFITSYCT-------------KNAKLWPAKEYKNLLLSI 828
           +H +L    + +       R+       +              N  L     ++ +   +
Sbjct: 812 VHAVLRCIGERLLEEGRPWRELKDDEILSLCTVETERAAAEAANNILMSDAYFRQIKNRV 871

Query: 829 TRLL-----ENPMMTTAMSCDSYS-EVSV-------SGKINCPKK-DIIISGRIDQI--S 872
              L     +    +        + E              N P    + + G+ID++   
Sbjct: 872 VATLVRTVRQLRDFSEGSEFSVRALEQPFGTKGAWKGLSFNLPDGVKVELVGQIDRVDTL 931

Query: 873 ISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
                  I I +YK+        E +      QL +Y  + + +  +K++    +Y
Sbjct: 932 ELDGRTFILIVDYKSGKKSITLPE-VYSGLELQLFLYMAVARRNLGSKAVPAGAVY 986


>gi|260773900|ref|ZP_05882815.1| DNA helicase IV [Vibrio metschnikovii CIP 69.14]
 gi|260610861|gb|EEX36065.1| DNA helicase IV [Vibrio metschnikovii CIP 69.14]
          Length = 687

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 99/295 (33%), Gaps = 25/295 (8%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++  +     +L        ++   ++        ++L +       I+     +  + 
Sbjct: 329 WQKHLAQWPIAYLVGDDELGSHVENPKLIAWLEKQLDQLAQLGTTKKAIQQYIIDHVDYP 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              + L L       +++  K    +DF  +I    D ++K         K       I+
Sbjct: 389 RLNSELALCWPCYQAWQQMLKDEQQIDFNIMISQATDYVRK--------GKFSVPWKFIM 440

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  +  +I++L E          +   LFAVGD+ QSIY F G++        
Sbjct: 441 IDEYQDISPARLALIQALCEQG-------PNHPNLFAVGDDWQSIYQFAGSDVHLTTEFA 493

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
               +         +I  L  ++R    I  V ++      +    + +S  + + R+  
Sbjct: 494 ARFPQS--------TIHHLDTTYRFNDQIGLVANQFVQKNPHQLPKTLNSFKSQKQRAVV 545

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
           +     ++  + +   +     P+Q            E  A    R  +  I  M
Sbjct: 546 LCASNQIE--KILDKLNRQAKVPKQVLLLGRNHYHQPEHLAEWQRRYASLQIEFM 598



 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 91/362 (25%), Gaps = 44/362 (12%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK- 384
             ++    D L        L   +   +  +    T     ++ +I   D   L  +   
Sbjct: 337 PIAYLVGDDELGSHVENPKLIAWLEKQLDQLAQLGTTKKAIQQYIIDHVDYPRLNSELAL 396

Query: 385 DTPLITFLTRFLKNDYKIS----------VVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
             P      + LK++ +I            V   +F +     + D              
Sbjct: 397 CWPCYQAWQQMLKDEQQIDFNIMISQATDYVRKGKFSVPWKFIMIDEYQDISPARLALIQ 456

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETV----YEYIQKFANCGISKFQHVIKYIHE 490
                    P      DD   I         +         +     +         I  
Sbjct: 457 ALCEQGPNHPNLFAVGDDWQSIYQFAGSDVHLTTEFAARFPQSTIHHLDTTYRFNDQIGL 516

Query: 491 LIHIAQFCSPHDFFTLILG-AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           + +     +PH     +     + ++  +    N++  +LD+               L  
Sbjct: 517 VANQFVQKNPHQLPKTLNSFKSQKQRAVVLCASNQIEKILDKLNRQAK----VPKQVLLL 572

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
             +   Q     +        ++  MT H +KG E+  V ++      F  +   +    
Sbjct: 573 GRNHYHQPEHLAEWQRRYASLQIEFMTCHASKGKEADFVIILAVNEGQFPARVKARHLDS 632

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                    P                          E  RL YV MTRA +++ I    N
Sbjct: 633 ALTQSKVDFPF------------------------AEERRLFYVAMTRAKEKVWITYSGN 668

Query: 670 TS 671
            S
Sbjct: 669 GS 670


>gi|126443338|ref|YP_001061045.1| UvrD/REP helicase [Burkholderia pseudomallei 668]
 gi|126222829|gb|ABN86334.1| UvrD/REP helicase [Burkholderia pseudomallei 668]
          Length = 599

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 73/545 (13%), Positives = 147/545 (26%), Gaps = 144/545 (26%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  ++DF+DL+I    L+ + D   W+   +      + +DE QD  L    +++ L  D
Sbjct: 187 REGLVDFDDLVIYGERLVSQHD---WVLPLVRARFPVLAVDEYQDLGLGLHRIVKRLAFD 243

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        LFAVGD  QS+Y F+GA+ + +                   ++ L +
Sbjct: 244 ---------GGVRLFAVGDADQSVYGFNGADSRLLHELANR---------GDVELVRLEM 285

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++R   +I+                                                 + 
Sbjct: 286 NYRCADEIIQA---------------------------------------------SERA 300

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             +   + ++                +A      +      +   K   Q  DI +L R 
Sbjct: 301 LGEARGYRAWDRDRAARVEMVECPEGLAEQAHRAVTEIIPAALEAKVGRQLGDIAILYRT 360

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                L+                                     FI          C L 
Sbjct: 361 ADIGDLVAEAVIAAG---------------------------LDFIRVDNAAPYRKCALT 393

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           S +     +D    C          E                 + + +    A+     +
Sbjct: 394 SWI-----EDCAAWCA-----GGWMEAKPLLRGLLERWLAFRYRRLSDAESRAERRRVTE 443

Query: 503 FFTLILGAKKG---RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
           F         G        +   ++V+       +  ++ +  S +     +  L+    
Sbjct: 444 FLWAHRQNGGGGNFVAALRATLLDDVMAAEPSLADQAVQVQSMSTALRSGGV--LQDLDM 501

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                   + N++ ++T+H+AKG E  VV ++      F   +++               
Sbjct: 502 ARLGGRDGSPNQLNLLTLHSAKGCEYDVVIMLGLDEGSFHWSNVQG-------------- 547

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                                     E  RL YVG+TRA D++ +       N++   + 
Sbjct: 548 ----------------------DALRESQRLFYVGLTRARDEVYMLYSGWNENKRTGRRY 585

Query: 680 TWYDM 684
               +
Sbjct: 586 YSGRL 590


>gi|325104297|ref|YP_004273951.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
 gi|324973145|gb|ADY52129.1| UvrD/REP helicase [Pedobacter saltans DSM 12145]
          Length = 606

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 19/194 (9%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K +   Y    K+N  LDFE ++    +LLK + +   I  K+      ILIDE QDT  
Sbjct: 163 KAILQEYFGILKENSQLDFEQILFYAYELLKSKPIICTILCKL---FPFILIDEYQDTKE 219

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           IQ+ +I  +        + ++       VGD  QSIY   G  P      +++       
Sbjct: 220 IQYHIISKI-------LSANNGCSKTLIVGDPNQSIYHSLGGYPMPKDDLEKLL------ 266

Query: 251 AGQKFSIIELPLSFRSTADILTVVD--KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
            G     + L  ++RS+  I+   D  K F+ P  A G  +D  + I +  S        
Sbjct: 267 -GFNLIQLSLDKNYRSSETIINYFDYYKTFATPIIAFGNEKDYNSLITYNLSVSLDNLIE 325

Query: 309 QLWEQVVSQHDSQC 322
           ++ + ++       
Sbjct: 326 EIAKLILFNVREAG 339


>gi|294664140|ref|ZP_06729529.1| UvrD/REP helicase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292606085|gb|EFF49347.1| UvrD/REP helicase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 547

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 82/601 (13%), Positives = 175/601 (29%), Gaps = 123/601 (20%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-----LTL 129
           T+    + + + +    + P     +    D    +R R      F              
Sbjct: 41  TELLAQRADFLFRTGTSRYPKKILAISFKTDAAHTLRRRVRDRSGFNHAHRLNSMTFDAF 100

Query: 130 AKYLNAHYEEAKKKNCVLD----------------FEDLIINTNDLLKKRDVSAWIRYKI 173
           A+ + A Y    K    LD                F++L+     L+++  +   I+  I
Sbjct: 101 ARRIIAIYRPLLKPKDRLDHGFKVGVTRVNAIQVAFKELVPLAQQLIEQHPM---IKRSI 157

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
           +   +H+ +DE QD +  Q+++I +L +D         +  ++ AVGD KQ I  + GA 
Sbjct: 158 NMAYSHVFLDEFQDCTSAQYKLIHTLFKD---------TSTSITAVGDAKQKIMGWAGAL 208

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
              + +                  ++L  ++RS   I  V +++    E           
Sbjct: 209 DGVMGKFADEF---------AAVPLKLVQNWRSAPAIRRVQNRMIIQME----------- 248

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                                    +     +   + ++F      +   + A RIA  I
Sbjct: 249 ------------------PVSAVAENDIVGDEGRVYLAHF------ADEQVEAARIAEKI 284

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-L 412
              I             I   +I +L  +   + +         +   I          L
Sbjct: 285 EEWIAEG----------IAPHEIAILHIR--QSAMFNQAIDGELDRRSIPRRNEQALQDL 332

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
                 + ++ L R +              S L+  +  D  +            + +  
Sbjct: 333 VSEPVTEFVVNLLRVLG----RKPAPSAYASVLYALTAQDDDEQGDWIRLLSVARDRVAG 388

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
             +   ++     + + E++ +    +       +L + +     ++    +V +VL  F
Sbjct: 389 GLSADHAEL--AFEQLQEVMALIPIATL------LLLSSEYDSGRVAEILGQVYEVLGNF 440

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           ++     +Q     L                    +   VR+MT+H  KG+E   V L  
Sbjct: 441 IHQHHDLDQALARFL--------------------DEGSVRVMTIHKCKGMEFECVVLPC 480

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
           T  + +                     + +     R   +    +       +E   L Y
Sbjct: 481 TERETWWGDQNDNRSAYFVGVSRAKQNLVVTYVDRRGAPIGASAQWDVIRHPQEEF-LGY 539

Query: 653 V 653
           V
Sbjct: 540 V 540


>gi|256821294|ref|YP_003145257.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
 gi|256794833|gb|ACV25489.1| UvrD/REP helicase [Kangiella koreensis DSM 16069]
          Length = 610

 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 84/510 (16%), Positives = 169/510 (33%), Gaps = 123/510 (24%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           + +RY I     ++ +DE QDT+  Q+  I+++            S   + AVGD  Q I
Sbjct: 197 SQVRYLILSTYKYLFLDEFQDTTDEQFAFIQTVF---------KGSNTIISAVGDTNQMI 247

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
            ++ GA P+   +  +               + L ++ RS   I+ +++ V       Q 
Sbjct: 248 MAWAGANPQNFEKLAKDF---------NSKTVHLMVNHRSNTKIINLINHVI------QD 292

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
           L+    T + +  +R G      +  +     +S+                        A
Sbjct: 293 LTTSMETPVVYVGTRKGAPPYNCIGAKAFDSPESE------------------------A 328

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             I+  I+  +  +          +   D  +++R+R        +  FL     +S+  
Sbjct: 329 AYISKHINLTLSENPT--------LAPSDFALILRQRAQDYYKNAIGEFL--SNDLSLRN 378

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
            D  ++++ + I+DLM         E    F  +L             K   +  +  + 
Sbjct: 379 EDALVVSNGVKIQDLMV--------EPLSIFWMLLIRYKAGLINYSQEK---KLDKIASF 427

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK------GRQQFISR 520
           +            K +  I  +   I+        +  T I              Q+ S+
Sbjct: 428 FTGYNLGQERERKKLKAYIARLMSCIN--FSEPVENTITKIFDIVGSAKIKLVYPQYRSQ 485

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
           + N+V +         L    N+   L++ I++ E              N+V++MT+H +
Sbjct: 486 YFNKVKESFCILFQDAL---NNNPKDLKQAINDYE------------GTNQVKLMTIHKS 530

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE   VF VD     +                                 +   ++   
Sbjct: 531 KGLEFDTVFFVDFHDDSWWG-------------------------------LRRAVQEKN 559

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           + +Q E     +VG++RA ++L   K+   
Sbjct: 560 EKSQREEKNTFFVGLSRAEERLYFTKNRGN 589


>gi|260577888|ref|ZP_05845819.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734]
 gi|258603982|gb|EEW17228.1| ATP-dependent DNA helicase [Corynebacterium jeikeium ATCC 43734]
          Length = 696

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 75/270 (27%), Gaps = 64/270 (23%)

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           + +  I  +        ++DE QD + +Q  V+ +   D             L  VGD  
Sbjct: 203 ESNTGIADEFRSRYRTFVVDEYQDVTPLQQRVLDAWVGD----------RDDLTVVGDAN 252

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IYSF+GA P+ +L       +         + + L   +RST  ++ + + V    + 
Sbjct: 253 QTIYSFNGATPEYLLDFTTKYPES--------TTVRLYRDYRSTPQVVDLANNVIGKAKG 304

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                  + T ++    R                                    +     
Sbjct: 305 R-----VAGTRLKLEGQRPAGPLP---------------------------QFHEYPDEP 332

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A  +   I  +I             ++  +I +L R    +    +          I 
Sbjct: 333 AEAVAVVKEIQALISKG----------VEPANIAILYRINSQSANYEYELE----QAGIG 378

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQED 433
                         I++ M        + D
Sbjct: 379 YQVKGGEGFFKRTEIREGMNAIIAAAKKYD 408



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 44/153 (28%), Gaps = 32/153 (20%)

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
               L    +       ++   L  +   +      +   +      V + ++H AKGLE
Sbjct: 440 RWQSLQALFDLVKEITSSAAEPL-SMPGVVALLKERMSAKNPPKFQGVTLASIHAAKGLE 498

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              VFLV         +H                                L     +   
Sbjct: 499 WDAVFLVGLNEGTLPIRH-------------------------------ALKGAGSEEAI 527

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
           EE  RL YVG+TRA + L +          K+N
Sbjct: 528 EEERRLFYVGITRAREHLHLSWSLARQEGSKAN 560


>gi|308198337|ref|XP_001386999.2| ATP-dependent DNA helicase HMI1, mitochondrial precursor
           [Scheffersomyces stipitis CBS 6054]
 gi|149388979|gb|EAZ62976.2| ATP-dependent DNA helicase HMI1, mitochondrial precursor [Pichia
           stipitis CBS 6054]
          Length = 864

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 80/572 (13%), Positives = 167/572 (29%), Gaps = 62/572 (10%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ--EIN 178
           +       ++K          ++N ++ F+D + +   ++     S+     I Q     
Sbjct: 239 EQASNKFKVSKDYIHELLVYLEQNGMMRFQDFVADAISIMDSSISSSDEESWIPQLANYK 298

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +++DE+QD       VI+ +T             + L   GD  Q IY F G+ P  + 
Sbjct: 299 VVIVDEIQDMHHSLLSVIKKVT----SYPTYDQKAKHLTLAGDPNQCIYEFLGSSPDLLE 354

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             ++             +   +  ++R T +IL  V          + +S  S      +
Sbjct: 355 NIEKEFPTF------DVNHYYMRETYRLTPEILDAVTAFSIRHHGLKDVSLTSVKPESFK 408

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
                +    +  + +V +                  +   ++  I A  I   + +  G
Sbjct: 409 PVAFSRRSASEECDFMVGEITRLIFESGGLLRPSDFLILTRTNKEIQA--IEDQLRDSYG 466

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +   +       +K  ++L                L    ++      R  L+    I
Sbjct: 467 MKSNKFSQNATWASSKVHVLLDILNVLKKGPGSDFALLCVLLRLDKRPGGRLRLSKLFNI 526

Query: 419 KDLMAL---GRFILSQEDD-LSFVCMLKSPLFNFSEDDIFKICTQRHETETV-----YEY 469
            D   +        + ED   S +           +  IF I        T+     +  
Sbjct: 527 YDQWRIRNSLTSNSNLEDFVRSDLEQSNKTSKGVVQSKIFSIYKLGDNRTTLDLLSTFLS 586

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
             +     ++  Q  +  +  L++I +  +  ++           +        ++    
Sbjct: 587 SVREMRQNLAVHQTPMAILESLLNIMEKSTLLEYLNSP-ETSGTGKAQKLSIEEQIEAHR 645

Query: 530 DEFLNFTLRNEQNSYSSLQE------LISELEQYPPTIKRAHSA--NHNEVRIMTVHTAK 581
               +       +  SS               ++       H    N + + + T+H AK
Sbjct: 646 IRLESSLSTFYNSLRSSYTRYVDTNSFNETFLEFFLKTYNDHVTILNEDMINLSTIHMAK 705

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE PVVF+    S   + ++   +                      + IV+   K    
Sbjct: 706 GLEFPVVFVPGNSSAFGTSQNWSSLFT--------------------DGIVAQDSKA--- 742

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                  RL YV  TRA   L I      ++ 
Sbjct: 743 -------RLFYVACTRAKSLLYIGTPEEDTST 767


>gi|466973|gb|AAA17159.1| uvrD [Mycobacterium leprae]
          Length = 457

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/425 (14%), Positives = 125/425 (29%), Gaps = 79/425 (18%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL----KKAQTLQQASQTQCIEERFSL 68
                +        ++  +   V    + G   +L       + L+        +  + L
Sbjct: 74  AVTFTQRAAAEMRSRLRALGAAVQAVSDFGVVRVLTFHAAAHRQLRYFWPRVIGDTGWQL 133

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L S F T         +    +    DL  +++ ++   I   +                
Sbjct: 134 LDSKFATVARAASSVRLHAGTDDVC-DLAGEIEWAKASLIGPEEYVAAVAAIGRDTPLDA 192

Query: 129 L-AKYLNAHYEEAKKKNCVL------DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                + A YE  K +   +      DF+DL+++T   ++     A +  +        +
Sbjct: 193 AQIASVYAAYEALKARGNGVPGVTLLDFDDLLLHTAAAIEND---AAVAEEFRDRYRCFV 249

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD + +Q  V+ +   D             L  VGD  Q+IYSF GA P  +L   
Sbjct: 250 VDEYQDVTPLQQRVLSAWLGD----------RDDLTVVGDANQTIYSFTGASPCFLLDFP 299

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R             +++ L   +RST  ++++ ++V +                      
Sbjct: 300 RRFP--------DATVVRLERDYRSTPQVVSLANQVIAAAHGR----------------- 334

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                   + +        +      S+  Y D   + ++ +          + +I   T
Sbjct: 335 --------VADSKFQLSGQREPGPAASFHEYSDEPAEAAAVAASI-------ARLIEFGT 379

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                        +I VL R    +         +     I+          +   IK  
Sbjct: 380 ----------SPSEIAVLYRVNAQSEAYEEALTEV----GIAYQVRGGEGFFNRQEIKQA 425

Query: 422 MALGR 426
           +   +
Sbjct: 426 LLALQ 430


>gi|188991830|ref|YP_001903840.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733590|emb|CAP51795.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris]
          Length = 604

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 72/536 (13%), Positives = 147/536 (27%), Gaps = 143/536 (26%)

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +   ++D++D+++    L+   D   W+   +  +   +++DE QD  +    +++ L 
Sbjct: 185 LRDEGLIDYDDMVVFGQRLIADND---WVLPLVQAKFPVLVVDEYQDLGVALHRIVKRLA 241

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            D             LFAVGD  QSIY F GA+   ++                   ++L
Sbjct: 242 FD---------GGVRLFAVGDADQSIYGFTGADGALLIELAAR---------SDIEPVQL 283

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            L++RS                                       G V   E  + +   
Sbjct: 284 QLNYRS-------------------------------------GAGIVTASEMALGEARG 306

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                    T+    L     A   A  +A  I   + +               DI +L 
Sbjct: 307 YQASDPARQTTIEFLLRPGGMADQAAHAVAQIIPAALASKPGR--------TLGDIAILY 358

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           +  +   ++         DY           +     ++D  A                +
Sbjct: 359 KDYRAGDIVAEAVATGGLDYIRVDTAAPYRKVALTSWVEDCAAWC---------GGGWRV 409

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV-IKYIHELIHIAQFCS 499
            +  L                                + +++      + +     +  +
Sbjct: 410 GRPQLRGL-----------------------------LDRYRAFHRASLDDAQARREEQA 440

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF-LNFTLRNEQNSYSSLQELISELE-QY 557
                  +   ++  ++F++   + V+D L    L    + EQ    +            
Sbjct: 441 LTALLWELRADQQPAREFVASLRDGVVDHLLAVELALADQEEQLDRMTAALAEGGALASL 500

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
             T       + + + ++T+H+AKG E  VV +V         ++               
Sbjct: 501 DITSLGGRDGSPDHLNLLTLHSAKGCEYDVVIMVGLDLGNLPWRN--------------- 545

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                       E  RL YVG+TRA D++ +         
Sbjct: 546 ---------------------ESPKKLRESRRLFYVGLTRARDEVHMLYSGFVDGR 580


>gi|68536696|ref|YP_251401.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
 gi|68264295|emb|CAI37783.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium
           K411]
          Length = 696

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 75/270 (27%), Gaps = 64/270 (23%)

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           + +  I  +        ++DE QD + +Q  V+ +   D             L  VGD  
Sbjct: 203 ESNTGIADEFRSRYRTFVVDEYQDVTPLQQRVLDAWVGD----------RDDLTVVGDAN 252

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IYSF+GA P+ +L       +         + + L   +RST  ++ + + V    + 
Sbjct: 253 QTIYSFNGATPEYLLDFTTKYPES--------TTVRLYRDYRSTPQVVDLANNVIGKAKG 304

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                  + T ++    R                                    +     
Sbjct: 305 R-----VAGTRLKLEGQRPAGPLP---------------------------QFHEYPDEP 332

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A  +   I  +I             ++  +I +L R    +    +          I 
Sbjct: 333 AEAVAVVKEIQALISKG----------VEPANIAILYRINSQSANYEYELE----QAGIG 378

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQED 433
                         I++ M        + D
Sbjct: 379 YQVKGGEGFFKRTEIREGMNAIIAAAKKYD 408



 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 44/153 (28%), Gaps = 32/153 (20%)

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
               L    +       ++   L  +   +      +   +      V + ++H AKGLE
Sbjct: 440 RWQSLQALFDLVKEITSSAAEPL-SMPGVVALLKERMSAKNPPKFQGVTLASIHAAKGLE 498

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              VFLV         +H                                L     +   
Sbjct: 499 WDAVFLVGLNEGTLPIRH-------------------------------ALKGAGSEEAI 527

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
           EE  RL YVG+TRA + L +          K+N
Sbjct: 528 EEERRLFYVGITRAREHLHLSWSLARQEGSKAN 560


>gi|254821701|ref|ZP_05226702.1| hypothetical protein MintA_17327 [Mycobacterium intracellulare ATCC
           13950]
          Length = 699

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/503 (11%), Positives = 132/503 (26%), Gaps = 73/503 (14%)

Query: 6   GLSLNESYE-LIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL----KKAQTLQQASQTQ 60
            ++  +       +        ++  I+         G  + L       + L+      
Sbjct: 53  HVAAGQVLAVTFTQRAAGEMRSRLRAIDAAAGTGPAVGAVSALTFHAAAHRQLRYFWPRV 112

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             +  + LL S F        +  +    +    DL  +++ ++   I   +        
Sbjct: 113 VGDTGWQLLDSKFAVVARAASRTRLNASTDD-VRDLAGEIEWAKASLIGPEEYPAAVAAA 171

Query: 121 KSTLASLTL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
              +         + A YE  K +   +   D            +    +  +       
Sbjct: 172 GRDIPLDAAQIAGVYAAYEALKARGEHVTLLDFDDLLLHTAAAIENDPAVAEEFRDRYRC 231

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++DE QD + +Q  V+ +   D             L  VGD  Q+IYSF GA P+ +L 
Sbjct: 232 FVVDEYQDVTPLQQRVLTAWLGD----------RDDLTVVGDANQTIYSFTGASPRFLLD 281

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             R             +++ L   +RST  ++++ ++V +           + + +    
Sbjct: 282 FSRRFP--------DATVVRLERDYRSTPQVVSLANQVIAAARGR-----VAGSKLHLVG 328

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            R                  +                                   +I +
Sbjct: 329 QRPPGPAPTFHEHPDEPAEAAAVAASIA---------------------------RLIES 361

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            T             +I VL R    + +             I+          +   IK
Sbjct: 362 GTP----------PSEIAVLYRVNAQSEIYEEALTE----AGIAYQVRGGEGFFNRQEIK 407

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI 478
             +        +  +     ++++ L          +    R   E +    +   +   
Sbjct: 408 QALLALHRAAERGAEGPLPDVVRAVLEPLGLTAQEPVGTRARERWEALSALAELVDDEVA 467

Query: 479 SKFQ-HVIKYIHELIHIAQFCSP 500
            + Q      + EL   A    P
Sbjct: 468 QRPQLDFPGLLAELRMRADARHP 490



 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 59/242 (24%), Gaps = 36/242 (14%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               E    Y+           + +  +  +H            D    +L       Q 
Sbjct: 383 EALTEAGIAYQVRGGEGFFNRQEIKQALLALHRAAERGAEGPLPDVVRAVLEPLGLTAQE 442

Query: 518 -ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            +     E  + L            Q        L++EL                 V + 
Sbjct: 443 PVGTRARERWEALSALAELVDDEVAQRPQLDFPGLLAELRMRADARHPPVVQG---VALA 499

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H AKGLE   VFLV          H                                L
Sbjct: 500 SLHAAKGLEWDAVFLVGLADGTLPISH-------------------------------AL 528

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
               +    EE  RLLYVG+TRA   L +      S   +  ++    +   +       
Sbjct: 529 AHGAESEAVEEERRLLYVGITRARTHLALTWALARSPGGRQGRKPSRFLNGIAPQARAEP 588

Query: 696 KK 697
             
Sbjct: 589 GP 590


>gi|282599796|ref|ZP_05971895.2| helicase IV [Providencia rustigianii DSM 4541]
 gi|282567853|gb|EFB73388.1| helicase IV [Providencia rustigianii DSM 4541]
          Length = 692

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 24/184 (13%)

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
              + +     + L   L   ++ A K    +DF  LI    +L++K         +   
Sbjct: 386 AEDIRELFQKRIRLMAPLLKAWKSALKDEGAIDFSGLIHQAVNLIEK--------GRFIS 437

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
              HIL+DE QD S ++ +++++L +         +    LFAVGD+ Q+IY F GAE  
Sbjct: 438 PWKHILVDEFQDISPLRAKLLQALRQ--------QNKRTALFAVGDDWQAIYRFSGAELN 489

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                +            +  I  L  ++R    I  + +       +      +S T  
Sbjct: 490 LTTSFQNNF--------GEGEICALDTTYRFNERIGDIANHFVLQNPSQLDKPLNSLTKG 541

Query: 296 RHRS 299
             +S
Sbjct: 542 NKKS 545



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 106/346 (30%), Gaps = 42/346 (12%)

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITF 391
             +      ++R++   I   +    +    +K +I+  A+DI  L +KR     PL+  
Sbjct: 347 DGEFWHDEKISRKVLPRIERWLSLMRMHGGSQKEMIENTAEDIRELFQKRIRLMAPLLKA 406

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML---------- 441
               LK++  I   G     +      + +      ++ +  D+S +             
Sbjct: 407 WKSALKDEGAIDFSGLIHQAVNLIEKGRFISPWKHILVDEFQDISPLRAKLLQALRQQNK 466

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFC 498
           ++ LF   +D          E      +   F    I          + I ++ +     
Sbjct: 467 RTALFAVGDDWQAIYRFSGAELNLTTSFQNNFGEGEICALDTTYRFNERIGDIANHFVLQ 526

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
           +P      +    KG ++ +     E    L+  L+          + L        +  
Sbjct: 527 NPSQLDKPLNSLTKGNKKSVVLLYEEA---LERLLDKMSGYVLEDENILILARYHYLKPE 583

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              K A       ++ MT+H +KG ++  V +    S                     G 
Sbjct: 584 VLNKAATRWPKLNIQFMTMHASKGQQADYVIICGLNSGK------------------DGF 625

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           P    +S     ++             E  RLLYV +TRA  Q  +
Sbjct: 626 PAPARESIIEEALLPKPENFAHA----EERRLLYVALTRAKQQAWL 667


>gi|257084590|ref|ZP_05578951.1| DNA helicase [Enterococcus faecalis Fly1]
 gi|256992620|gb|EEU79922.1| DNA helicase [Enterococcus faecalis Fly1]
          Length = 610

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 133/458 (29%), Gaps = 90/458 (19%)

Query: 152 LIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           +I      LLK       I   I +    + +DE QDT+++Q+E+               
Sbjct: 188 MITRLVIFLLKNNPA---IVESIRKTYKFVFLDEFQDTTVLQYELFSLCF---------K 235

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
           +S   + AVGD++Q I  + GA P   L  K              +   L ++ RS   I
Sbjct: 236 TSENFITAVGDDRQKIMRWAGALPDAFLSFKHDFL---------ANQHALYINRRSDVKI 286

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
             ++ ++    E A+G     T  +                           +       
Sbjct: 287 QKLLQEL---NEYAKGDFLGKTELV----------------------TTGIDSEAIIQVK 321

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
           ++  S  +        + I   I  +             V Q  DI V            
Sbjct: 322 TFSSSEEET-------QDIVDMIEKLCAEGKNIEEFCILVKQFPDIYV------------ 362

Query: 391 FLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                L N+  I +     F  L        ++   R  L   D  +++ +L        
Sbjct: 363 AQLSPLFNEKGIDIRNEAEFQDLLKENITILILDSLRAALVPNDSDAWISVLN------- 415

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               F       +     +  +          +H+ K +    ++  F    D F  I+ 
Sbjct: 416 ----FLHDFSDSKNYFDLKREEDIVLKTKKLLKHIAKKLS---NVVSFEELFDVFQYIIN 468

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
              G     S+F       L            + YS  ++    +E              
Sbjct: 469 -FYGIDNIRSQFPE--YTNLGFLETKVRELCDSLYSYYEKTSDWVESILC------FKGK 519

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           N + +MT+H +KGLE   VFL+    Q F         
Sbjct: 520 NCIPVMTIHKSKGLEFDTVFLLGMDDQSFWSFRDNPEE 557


>gi|289807982|ref|ZP_06538611.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 178

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 25  IKLMAPLLKAWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQ 76

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+        +    
Sbjct: 77  DISPQRAALLEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF-- 126

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +     L  ++R  + I  + ++      +      +S T    ++
Sbjct: 127 ------GEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 173


>gi|59712072|ref|YP_204848.1| superfamily I DNA/RNA helicase [Vibrio fischeri ES114]
 gi|59480173|gb|AAW85960.1| superfamily I DNA and RNA helicase [Vibrio fischeri ES114]
          Length = 467

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 24/166 (14%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
           T  +L L   L   Y +    N V+DF D+I    + ++          +       +L+
Sbjct: 25  TTKALELLMPLYQRYAKYLNDNQVIDFNDMIGKALEYVQN--------RQFHSPWKFLLV 76

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD S  +  ++++L +        ++   +LF VGD+ Q+IY F GA+ +       
Sbjct: 77  DEFQDISEPRARLVKALRD--------NTVKSSLFCVGDDWQAIYRFSGADVRLTTEFSN 128

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
                +           L ++FR  + I  V  +  +         
Sbjct: 129 YFGATSET--------TLDMTFRFNSSIGDVATRFVTQNPVQLKKD 166



 Score = 46.1 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 22/94 (23%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++ + + H +KG E+  V ++   +                           P  K    
Sbjct: 242 DIELQSFHASKGKEAEYVVVMGLATGK----------------------HGFPSEKQTPP 279

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           +V  L+    K    E  RL YV +TRA  ++ +
Sbjct: 280 LVDALLPQGDKFEYAEERRLFYVALTRAKHRVYL 313


>gi|254507658|ref|ZP_05119790.1| helicase IV [Vibrio parahaemolyticus 16]
 gi|219549355|gb|EED26348.1| helicase IV [Vibrio parahaemolyticus 16]
          Length = 688

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 82/249 (32%), Gaps = 24/249 (9%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            ++        +L        ++   ++         +L        +I+     +  + 
Sbjct: 329 WQKHLQKWPIAYLAGDEELGSHVENPKLIAWLEKQLSQLSAMGTTKKEIQQSLIEHPEYT 388

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY-KIDQEINHI 180
              + L L       ++E  K    +DF  +I              W+   K      +I
Sbjct: 389 RLNSELALVWPCYTAWQEMLKSEGHVDFNIMITQATK---------WVEKGKFVSPWKYI 439

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           +IDE QD S  +  ++ +L +     +        LFAVGD+ QSIY F G++       
Sbjct: 440 MIDEYQDISPQRLALVEALCKQSEHQE------CVLFAVGDDWQSIYQFAGSDVDLTTGF 493

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           K              +I  L  ++R    +  V ++      +    + +S    + +S 
Sbjct: 494 KDRFPHS--------TIHHLNTTYRFNNRLGEVANQFVQQNPSQLNKALNSHKEQKAKSV 545

Query: 301 RIGQVGTVQ 309
            +     V+
Sbjct: 546 VLAPSANVE 554



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 60/207 (28%), Gaps = 27/207 (13%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
             +         ++        + E+ +     +P       L + K ++          
Sbjct: 493 FKDRFPHSTIHHLNTTYRFNNRLGEVANQFVQQNPSQL-NKALNSHKEQKAKSVVLAPSA 551

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              +++ L+   R  + + + L    +   +               +  MT H +KG E+
Sbjct: 552 --NVEKILDDLNRKAKATQTVLLLGRNHYHKPELLSDWQKRFAMLSIDFMTCHASKGKEA 609

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV      F  +                            ++   L + +      
Sbjct: 610 DFVILVSVDEGQFPARVKTL------------------------HLDGALTQSIDTYPYA 645

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSN 672
           E  RL YV +TRA  ++ +    + S+
Sbjct: 646 EERRLFYVALTRAKKKVWVTYKGDGSS 672


>gi|123441896|ref|YP_001005879.1| DNA helicase IV [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122088857|emb|CAL11663.1| putative helicase IV [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 684

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 33/247 (13%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK----KSQDEFIKIRD 112
           +Q +   E  +    + +      + + +   +  +       ++       +   +  +
Sbjct: 320 AQAKGWREWLTDELEWDIDDGEFWRDSRLAARLAGRLERWLGLMRMHGGSQAEMIEQADE 379

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   +     + L   L   ++ A K+   +DF  LI    +LL+K         +
Sbjct: 380 EVRALFQKR-----IRLMAPLLKAWKTALKEEGAVDFSGLIHQAVNLLEK--------GR 426

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QD S  +  ++ +L +         +    LFAVGD+ Q+IY F GA
Sbjct: 427 FVSPWKHILVDEFQDISPQRAMLLSALRK--------QNKQTCLFAVGDDWQAIYRFSGA 478

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E        +   + A           L  ++R    I  + ++             +S 
Sbjct: 479 ELSLTTAFSQNFGESAE--------CALDTTYRFNDRIGEIANRFIQQNPYQLKKPLNSL 530

Query: 293 TTIRHRS 299
           +    +S
Sbjct: 531 SQGNKKS 537



 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 114/374 (30%), Gaps = 45/374 (12%)

Query: 311 WEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           W+Q  S+  +Q    +E  T   +      +    S LA R+A  +   +G   +    +
Sbjct: 311 WQQQCSEKKAQAKGWREWLTDELEWDIDDGEFWRDSRLAARLAGRLERWLGLMRMHGGSQ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKDLMA 423
             +I+  D  V    +K   L+  L +     LK +  +   G     +      + +  
Sbjct: 371 AEMIEQADEEVRALFQKRIRLMAPLLKAWKTALKEEGAVDFSGLIHQAVNLLEKGRFVSP 430

Query: 424 LGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
               ++ +  D+S    +          ++ LF   +D          E      + Q F
Sbjct: 431 WKHILVDEFQDISPQRAMLLSALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSQNF 490

Query: 474 ANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                            I E+ +     +P+     +    +G ++ +    +E    L+
Sbjct: 491 GESAECALDTTYRFNDRIGEIANRFIQQNPYQLKKPLNSLSQGNKKSVVILPSEQ---LE 547

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             L+      ++    L        +     K         +  MT+H +KG ++  V +
Sbjct: 548 SLLDKLSGFVKDDERILILARYHHLRPEILQKATTRWPKLTIDFMTIHASKGQQADYVII 607

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                       + +  I+  +   P                             E  RL
Sbjct: 608 AGLHEGNDGFPAVVRESILEDVLLPPPEDFPD----------------------AEERRL 645

Query: 651 LYVGMTRASDQLII 664
           LYV MTRA  Q+ +
Sbjct: 646 LYVAMTRAKHQVWL 659


>gi|237808232|ref|YP_002892672.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
 gi|237500493|gb|ACQ93086.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
          Length = 698

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 27/221 (12%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDE---FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
                +     S  + + L   +     F          +        L+L + + A YE
Sbjct: 337 DRAYPKSAADFSLLIADFLLLFKQSHLTFPAFATDIKKQRSSVRFSLFLSLFQPVLAAYE 396

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           +   +   +DF D+I    + ++          +      HIL+DE QD S  +  ++++
Sbjct: 397 QHLTERNEIDFADMIGKAIEYVES--------GRYCSPYQHILVDEFQDISQERARLLKA 448

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L                LFAVGD+ QSIY F G++     + + I    AT A       
Sbjct: 449 LL--------AQRDDTVLFAVGDDWQSIYRFTGSDINITRQFESIFGATATTALDTT--- 497

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                FR    I  V              + +S + + H +
Sbjct: 498 -----FRFNNKIGEVASGFVLKNPEQINKTINSASIVAHPA 533



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 22/97 (22%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           ++  M+VH +KG E+  V  +   +                           P  K  + 
Sbjct: 597 DIEFMSVHASKGKEADYVIALGMNNGK----------------------YGFPSLKETDP 634

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           I+  L+   +  +  E  RL YV +TRA  ++ +  H
Sbjct: 635 ILEFLLPEKETFSYAEERRLFYVALTRARHRVYLVYH 671


>gi|309806219|ref|ZP_07700233.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167366|gb|EFO69531.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
          Length = 416

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/412 (13%), Positives = 114/412 (27%), Gaps = 64/412 (15%)

Query: 460 RHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
              + + Y+ I  +      +      + I  +    + +      +    I       +
Sbjct: 7   ASRSTSFYDAIINYIQTSDDELSIKCNNFINELSHFRNFSIDHRISELICDIFQNTHIIE 66

Query: 516 QFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANH 569
                  G +    L+         E + +  L + I+ +++        +   +     
Sbjct: 67  LVSGMVNGPQRRVNLESLYERAQAFETSGFKGLYQFINFIKRMQKNKYDFSQPLSSKDAQ 126

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + +++MT+H +KGLE P+VFL+    +           I        G+ I     +  +
Sbjct: 127 DAIKLMTIHGSKGLEFPIVFLIGLNHKYQQADTTNNYVITTKS--GLGLTITTADYRIDS 184

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--TWYDMVYD 687
            + S      K    EE  R+LYVG+TRA  +LI+       N     Q     ++ +  
Sbjct: 185 LVKSYCNFEKKLQNLEEEIRILYVGLTRAKQKLIMVSTMANENIIPDFQNKLDAHNQLPF 244

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT------------------------- 722
              ++       L   +   +      S    E                           
Sbjct: 245 IDKSNAISPMSFLGPELFAHQVNTLCLSDIDRELDKEDKVHYIQVMQLKSQASVQISNQS 304

Query: 723 --------------------PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                               P +   T        +I K    P   + +   ++N +  
Sbjct: 305 RSDLSDKLLATVKTLYNFNYPFQAATTTTSYQAVSEIKKAFEYPNDKESDNSKLINSANK 364

Query: 763 DTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYC 809
                ++  + L          G  +H LLQ              + I +  
Sbjct: 365 YLMPISDQPAFLKKANFTGAEIGTAMHLLLQYYDYTIEYSPTNVDDLIENLV 416


>gi|260890361|ref|ZP_05901624.1| hypothetical protein GCWU000323_01525 [Leptotrichia hofstadii
           F0254]
 gi|260859981|gb|EEX74481.1| hypothetical protein GCWU000323_01525 [Leptotrichia hofstadii
           F0254]
          Length = 387

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 136/406 (33%), Gaps = 60/406 (14%)

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            +  F N   +      S+L E I+  E+    +K+  S + N + ++T+H +KGLE   
Sbjct: 32  NIFIFFNILKKY-----SNLYEFITFAEEEKENLKQVSSKDINAINLLTIHASKGLEFDT 86

Query: 588 VFL--VDTGSQVFSHKHIKKMHIMPSLND---DPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           VF    +T        + K         +      +       K   N +S++  +  + 
Sbjct: 87  VFYYKRETNKGRTDKDNFKSYLDFDEKFNIVKKFIVLFTDYNKKMFENELSEMRDNNSQK 146

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E     YV +TRA   LI+   +  + +K+        +V                 
Sbjct: 147 EMMEEINNDYVALTRAKKNLILLFDAEITKDKRYADSLVKRVVDVY-------------- 192

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                     + + +                  + K+   LF    +D       +  T+
Sbjct: 193 ---------EDENRYEIGEIIESEIPEEITDTSDVKVSNNLFETYFDDDKFVVKKSSITL 243

Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
           + + K              +GL +H   + I    E+ +    ++  ++   +   K  +
Sbjct: 244 EKEFK------------RKKGLAMHYYFEHISNNLENDKLIAKSALLSRYGNMLGKKIVE 291

Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ--NIFI 880
            L++ + + +     +   +      V    +I   +    I   ID+I+I +    I+I
Sbjct: 292 ELIVRMEKFI--EKNSDIYNEKYK--VYTEFEIYDSEGKKRI---IDRINIDENNKKIYI 344

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL-KDSYPNKSLVCLLI 925
           ++YKT              +  Q++ Y+ IL K    +  +   L+
Sbjct: 345 YDYKTGFEPETN-----EKYQEQINEYKDILSKKVSEDYEIDVQLL 385


>gi|289769235|ref|ZP_06528613.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
 gi|289699434|gb|EFD66863.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
          Length = 770

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/422 (10%), Positives = 96/422 (22%), Gaps = 36/422 (8%)

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +     L  L          I+        +     +H A   E   + L D        
Sbjct: 361 RGPSDFLTALYEHCAAGHGEIEVWADEPAEDEENPALHRATADEVWPLPLDDAALARRRS 420

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                +  +  L      P   P +    +             + E +R        A  
Sbjct: 421 AAETVLAHLDGLAVREDGPPSAPATYEDPDWPPPPEDDEGLPEEAEPDR----AGDPAHW 476

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY-EWSTHHP 719
                +    + E  +   +            +     +   +                 
Sbjct: 477 DSWTTERPAAAREAATAPESPAAPQAGPTVPHQAPPPEQPPGTAPVPAPARLTPEEARTV 536

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
            +   + +    +L+  ++   ++  P     ++   L         +            
Sbjct: 537 ASWDRDLDALTGELLRARESVTEVPLPASLTASQLLSLAADPDGFAQELARPMPRPPQPA 596

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
             RG   H  ++                +      L   +E       I    +   +  
Sbjct: 597 ARRGTRFHAWVE--------------ARFEPLTLPLLEPEELPGGDAEIADDHDLEFLKD 642

Query: 840 AMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISISQQN----IFIFEYKTHHHVPQE 892
           A     Y+      V           ++ GRID +            I ++KT+     +
Sbjct: 643 AFERTEYARRTPFRVEAPFQLSLAGRVVRGRIDAVYKEGDGDTATYEIVDWKTNRAATAD 702

Query: 893 IEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
                     QL++Y     +    P  S+    +YV   +V          A  ++   
Sbjct: 703 P--------LQLALYRIAWAEQQHVPPASVTAAFLYVRTGEVVRPEGLPDRAALEKLLLA 754

Query: 951 IP 952
            P
Sbjct: 755 EP 756



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/465 (12%), Positives = 123/465 (26%), Gaps = 64/465 (13%)

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +I VL R   D   I            + V       L     + DL+A+   +    
Sbjct: 7   PGEIAVLCRTATDFAEIQGALVA----RDVPVEVVGLSGLLHLPEVADLVAVCEVLQDPG 62

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRH----------------------------ETE 464
            + S V +L  P +     D+  +  +                              E  
Sbjct: 63  ANASLVRLLSGPRWRIGPRDLALLGRRARLLVSHARVEGDDDPDRRLAEAVEGVDPSEVI 122

Query: 465 TVYEYIQKFANCGIS----------------KFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           ++ + +  F    +                 +F  +   + EL   A      D    +L
Sbjct: 123 SLADALDTFLETPLDGTGDDDGLPFSADARVRFARLATELRELR-RALSDPLMDVLHRVL 181

Query: 509 GAKKGRQQFISR---FGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTI--- 561
                  +  +          + L  FL+           ++L   +  L          
Sbjct: 182 AVTGLEVELSASPHALAARRRETLSNFLDVAASFAAGDGEATLLAFLGFLRTAAQYEKGL 241

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH-----IMPSLNDDP 616
             A     N V+++T H +KGLE  VV +    +  F     ++       ++P      
Sbjct: 242 DNALPGGENTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSGQGREKWTAQGKVLPHGLRGD 301

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
              +    S     +     + +K     E  RL YV  TR    L+   H    ++KK 
Sbjct: 302 AETLPDVASWDARGL-KAFHEAMKDHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKP 360

Query: 677 NQRTWY--DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              + +   +          ++      + +++    +  +       PL+     ++  
Sbjct: 361 RGPSDFLTALYEHCAAGHGEIEVWADEPAEDEENPALHRATADEVWPLPLDDAALARRRS 420

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
             + +   L      +   P                +      + 
Sbjct: 421 AAETVLAHLDGLAVREDGPPSAPATYEDPDWPPPPEDDEGLPEEA 465


>gi|90413294|ref|ZP_01221288.1| hypothetical helicase IV [Photobacterium profundum 3TCK]
 gi|90325695|gb|EAS42158.1| hypothetical helicase IV [Photobacterium profundum 3TCK]
          Length = 694

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 97/306 (31%), Gaps = 28/306 (9%)

Query: 2   KNRFGLSLNESY-ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           + R  L +N+      +  L       V D    VS                L++   + 
Sbjct: 258 RERLALKVNDRIKVATFHALGTQIIQSVEDERPNVSPLALDDKAKAQWITSILKEQWGSA 317

Query: 61  CIEERFS----LLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
              +R+                + +   KN        +  +L  +   S+ + + I D+
Sbjct: 318 ASAKRWQKHLTQWRIPGFKADNSMEQQAKNEQLANWVWRHIELIGQSGLSKSDLLAIIDK 377

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
            N     +   + L L       Y +  K N  +DF  +I    + +           K 
Sbjct: 378 SNNPAAKQRMKSELGLLWPCFRAYGQHLKSNKQIDFNTMIQKAVEYVND--------GKF 429

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             E   I++DE QD S  +  +I +L       +       TLFAVGD+ Q+IY F GA+
Sbjct: 430 VPEWRFIMVDEYQDISPQRLTLIEALC----HSEEETKPRPTLFAVGDDWQAIYRFAGAD 485

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                                  I EL +++R  + I  V +               S  
Sbjct: 486 VNLTTGFAERF--------GSSHITELDITYRFNSMIGEVANTFIQQNPQQLRKDLTSHK 537

Query: 294 TIRHRS 299
             + ++
Sbjct: 538 KQKRKA 543



 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                I E+ +     +P      +   KK +++ ++    ++++   E +    +NE+ 
Sbjct: 509 RFNSMIGEVANTFIQQNPQQLRKDLTSHKKQKRKAVTLLCQDLLE--QELVQLASQNEKP 566

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L    ++ ++               +  MT H +KG E+  VF++D    VF    
Sbjct: 567 VTVLLLGRNNK-QRPEKLKAWQTQWPQLNMTFMTCHGSKGREADFVFILDVNRGVFPAPE 625

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                       + + L    +     E  RL YV +TRA   +
Sbjct: 626 R------------------------ETGLAACLQSKNEGYADAEERRLFYVALTRAKKHV 661

Query: 663 IICKHSNTSNE 673
            +C     ++ 
Sbjct: 662 WVCADPEKTSS 672


>gi|121582857|ref|YP_973299.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
 gi|120596119|gb|ABM39557.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2]
          Length = 554

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 90/576 (15%), Positives = 161/576 (27%), Gaps = 114/576 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
              +  ++L   +     +       + FL +  T +       I+ K    +    + +
Sbjct: 22  AAQEVLRSLALTAGPGAGKTEMLAQRADFLLRTGTSRYPQRILAISFKVDASRNLKDRVR 81

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL----------------D 148
                          F         AK +   +         L                D
Sbjct: 82  KRCGAELAARLDSHTF------HAFAKRIIDRFRPILTGRDALNPDYTIGVGRVQGQQLD 135

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F +L+     +LK   ++      + Q  +H+ +DE QD +  Q+++I+           
Sbjct: 136 FGNLVPLAVQILKACPIAC---NAVRQTYSHVFLDEFQDCTDEQYQLIK---------VA 183

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
              S   L AVGD KQ I  + GA     L      Q            + L  +FRS  
Sbjct: 184 FLGSSARLTAVGDTKQRIMGWAGALEGVFLTFATDFQ---------AVPLNLYQNFRSKP 234

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            +  + + +  + + A  + +D            G  G+V +     S  +         
Sbjct: 235 RLRRMQNAMVRVMDPAAAVPDDMLM---------GPGGSVDVLHFSDSAEE--------- 276

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                            AR IA  + + IG            I   +I VL+ +     L
Sbjct: 277 -----------------AREIADLVQHWIG---------IESIPPSEIAVLLSR--QPDL 308

Query: 389 ITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
              L         I+         L+   A + ++     +  +    +F  ++   +  
Sbjct: 309 YAELLMNEFKRRGIAFRNEQLLQDLSVEPAARLIVDFLTVVAGERQSAAFGRLMDVLI-- 366

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            +  D      QR       E  ++    G ++  + I     L   A            
Sbjct: 367 ATGIDEETAYEQRSRWLRFLEQSRRAMRGGQAQPLNAIS----LRANAMT---------F 413

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
           L               E  D L E +  T            + +  L  +          
Sbjct: 414 LKMLGREAVVALSSDYERGDRLTEVVAQTFDRLTELLGGEADPVRALSHFSEDS------ 467

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               VRIMT+H  KGLE   V ++    Q F     
Sbjct: 468 ---AVRIMTIHKCKGLEFDTVVILGVEQQTFWGDRD 500


>gi|262067986|ref|ZP_06027598.1| helicase IV [Fusobacterium periodonticum ATCC 33693]
 gi|291378387|gb|EFE85905.1| helicase IV [Fusobacterium periodonticum ATCC 33693]
          Length = 1017

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 92/226 (40%), Gaps = 22/226 (9%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            E  K  ++  +Y  F      L   + K +   Y  +  KN  +DF D+I    D L K
Sbjct: 588 QELTKFINKAYSYSPFTRDKHLLFFKMFKPILEFYNNSLNKNKEIDFSDMINKAIDHLNK 647

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
           +       +++     +I+IDE QDTS+ ++++++++ +              + AVGD+
Sbjct: 648 KTKKE--VFELGLRYKYIIIDEFQDTSVARFKLVKAIRDKI--------DDCKVLAVGDD 697

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV-DKVFSI- 280
            QSIY F G++       ++   K          I  +  ++R++ +++ +  + V S  
Sbjct: 698 WQSIYRFAGSDISIFTEFEKYFGK--------TEINFIEKTYRNSQELVNIAQNFVMSNP 749

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            +  + L+ D    I     +        +   ++     +   ++
Sbjct: 750 NQIKKNLNSDKRLEIPIIYEKTNSDNKNFIIYNIIKSLSEEYGEKE 795



 Score = 41.8 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 22/91 (24%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
             TVHT+KGLE+  V L+D    +                      +  P     ++++ 
Sbjct: 841 CKTVHTSKGLEADEVILIDVNDNI----------------------VGFPNKILDDSVLF 878

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            ++         E  RL YV +TR  ++  I
Sbjct: 879 YVLSKSDSYLYGEERRLFYVALTRTRNRTFI 909


>gi|325298300|ref|YP_004258217.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
 gi|324317853|gb|ADY35744.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170]
          Length = 871

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 82/247 (33%), Gaps = 33/247 (13%)

Query: 48  KKAQTLQQASQTQCI---EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
                L++      +   E+    L    L     P+ +   +   +        +K S 
Sbjct: 438 DIRDKLRKLLAEAGVPIQEKTDEELYDLVL-----PKGSKQEKAFIRLVVTFVTLVKSSC 492

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
               ++  +       +S      + + +   Y  A   +  +DF D I+   ++     
Sbjct: 493 KSVKEVLKQAKNADDERSVFIIKNIFQLVYERYINALSDSNQIDFTDAILQATEICCTSH 552

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                        ++I++DE QD S+ ++  ++ L E         + P  L+ VGD+ Q
Sbjct: 553 PVE---------YDYIIVDEFQDISVDRYNFLKVLREG--------NPPAKLYCVGDDWQ 595

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY F G++     +                 I ++  ++R    ++++        +  
Sbjct: 596 SIYRFSGSDMALFNQFPEYFGA--------TEINKIETTYRFGEPLVSLSSNFIQRNKAQ 647

Query: 285 QGLSEDS 291
              +  S
Sbjct: 648 IQKNIHS 654


>gi|317508125|ref|ZP_07965808.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
 gi|316253536|gb|EFV12923.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974]
          Length = 548

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 83/276 (30%), Gaps = 73/276 (26%)

Query: 128 TLAKYLNAHYEEAKK--KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                +   YE AK      +LDF+D+++    + +    +A    ++   +   L+DE 
Sbjct: 249 EAIAEVYQRYESAKAKGAERLLDFDDVLLAMIGVARSSADAAG---QLRSWLRCFLVDEF 305

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +Q+E++ +             +   + AVGD  Q+IYSF GA         R   
Sbjct: 306 QDITPLQYELLMTWLG----------ARDNVTAVGDPNQTIYSFAGACSTFFTEFDRRFP 355

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
             A+          L   +RSTA +  + + +       QG   D               
Sbjct: 356 ATAS--------FRLDRDYRSTAQVTGLANLLLGDAGKLQGQVPDGPAP----------- 396

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
                                           + +     A  +A  ++ +I   T    
Sbjct: 397 -----------------------------RFAEYADELGEAAGVAREVAELIRGGT---- 423

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  A++I VL R            R       
Sbjct: 424 ------SAREIAVLFRVNTHAARFERALRAKGIPTG 453



 Score = 40.7 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 33/113 (29%), Gaps = 33/113 (29%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + V + ++H AKGLE   VFLV     V                +             
Sbjct: 453 GEDGVSLCSLHAAKGLEWEAVFLVGLVEGVLPVAWAAAAGPEAVAEE------------- 499

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                RLLYVG+TRA  +L++     +        R 
Sbjct: 500 --------------------RRLLYVGITRARTRLMLSWCRESGGRAARASRF 532


>gi|317132411|ref|YP_004091725.1| hypothetical protein Ethha_1457 [Ethanoligenens harbinense YUAN-3]
 gi|315470390|gb|ADU26994.1| hypothetical protein Ethha_1457 [Ethanoligenens harbinense YUAN-3]
          Length = 1128

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 182/688 (26%), Gaps = 132/688 (19%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +      +  +    +    +     + +A  I+ ++ T            +  +++V+ 
Sbjct: 287 RPEAAPFNGEASALRIVSAGNLYEEVQFVAREIARLVQTGE---------ARYDEMVVIS 337

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R     PL   +   + N Y I +  + R  ++ H  +  +      +       + +  
Sbjct: 338 R---GLPLYNGILDPVCNKYGIPLFLDARRDVSAHPLMAFVSGALELLAGNFRQEAVLRY 394

Query: 441 LKSPLFNFSEDDIFKIC--------TQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           LK+ L   S  +I ++           R   +T +                 ++ ++ L 
Sbjct: 395 LKTGLAGLSTVEIAQLENYLYTWNLQGRTAWQTEWTDHPDGFGSTAQPDDARLRTLNALR 454

Query: 493 HIAQFCSPHDFFTLILGAKKGR------------------------------QQFISRFG 522
                  P +     L    G                               +Q +    
Sbjct: 455 LRVME--PVETLAAALEQADGAGQAQALYAFLTGMQVERQMAEACARFAQNGEQELEDEY 512

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAK 581
            +V D L   L            ++ EL+  L      T         ++V        +
Sbjct: 513 RQVWDKLIGMLEQMAAVLGERAVTVPELLRMLRLAIGATELAHIPPTLDQVTAGDAERIR 572

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
             ++  VF++     VF       +       D     +     +              +
Sbjct: 573 AGDAAYVFVIGLADGVFPKTGSGGILT-----DSEREQLIRLGLELSPPA---------E 618

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
               E   + Y     AS  L +C   + +  K      +   V   F +  R       
Sbjct: 619 ERLVEERFIAYQAFACASRALYLCCPRSDTKGKVIQSSPYLAQVQALFPHAMRCDASCGP 678

Query: 702 NSI----------------NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                               +D + A   +          R   +++  +++       +
Sbjct: 679 LDAIWSGQSAFEQLASRFRERDGFSAALRACFESRPEDAIRLRALERAAEKRPARLTDHA 738

Query: 746 PIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIF 794
             +    E   ++PS ++  G+                  ++      G ++H +L+ + 
Sbjct: 739 AARALFGERMHISPSRLEAYGQCRFLYFCRYGMKALPRRRAELAAPEVGTLVHFVLEHLL 798

Query: 795 TL-PEHKRKNFITSYCTKNAKLWPAKEYK------------------NLLLSITRLLENP 835
              P  +      +   +   L                          L  ++ RL++  
Sbjct: 799 QAHPGGQLAELSRAQLEEETGLLLTDFADGYLGGLENKPERFKHLFLRLRETVLRLID-- 856

Query: 836 MMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQISI--SQQNIF-- 879
            +    S   +  V     I    +             I + G++D++ I  +    +  
Sbjct: 857 RLAAEFSQSRFVPVDFELPIGIDGEVPPTVLPLQDGGAIAVEGKVDRVDILKNGDRAYLR 916

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           + +YKT      +   + Y    Q+ IY
Sbjct: 917 VVDYKTGSKSF-QFADVLYGLNLQMFIY 943


>gi|254566359|ref|XP_002490290.1| Mitochondrial inner membrane localized ATP-dependent DNA helicase
           [Pichia pastoris GS115]
 gi|238030086|emb|CAY68009.1| Mitochondrial inner membrane localized ATP-dependent DNA helicase
           [Pichia pastoris GS115]
 gi|328350684|emb|CCA37084.1| hypothetical protein PP7435_Chr1-0950 [Pichia pastoris CBS 7435]
          Length = 701

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 81/534 (15%), Positives = 151/534 (28%), Gaps = 127/534 (23%)

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           +      VL    +I     LL++         K++  +  +++DE QD      +++  
Sbjct: 172 KFLHNTNVLTSSSIISQCTLLLRENS------QKLNHRV--LIVDEFQDMYPELVQLVAV 223

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L  D             L   GD  QSIYSF G+ P  +        K   +   K   I
Sbjct: 224 LASDC-----------HLTVAGDPDQSIYSFLGSTPYVLNGL----DKILPHNYSKIETI 268

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L  +FR +  I+    ++FS+ +                           L        
Sbjct: 269 NLTATFRMSLPIIESS-QLFSMFKKP-------------------------LTPVESPAP 302

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
           +    P ++ +T            +     I   IS ++            V++  D  +
Sbjct: 303 NYLPKPTKKYFTDI----------AQEVDFILEEISRLVHQ-------CGGVLKPSDFAI 345

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L  K  D      +         I            +  +   +   R I     D   +
Sbjct: 346 LSFKNDDINYAQSVFE----KQGIKTQKLGSSPEWTNNELYHFINFLRVINDPGADYPLI 401

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
             L S +       +  +  +   + +   ++ K     I  F   +  + +      F 
Sbjct: 402 SCL-SIIPGVGHVSLSSLVLKAMSSGSPIFHLLKGVRPVIDSFVEDLNTVRD-RFFQYFD 459

Query: 499 SPHDFFTLILG---AKKGRQQFI-SRFGNEVID--VLDEFLNFTLRN---EQNSYSSLQE 549
            P + F + L         Q    +   ++  D     +  +  +      +    +   
Sbjct: 460 DPDEIFKITLEFASKYGLLQAIKSNPNWSQKPDSFYFKQLESIRVGFHMASKLRSPNETL 519

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           +   +  +   I +      + +   T+H AKGLE PVVFL+                  
Sbjct: 520 VQYFIAHFADEIVQPTE---DAINFSTIHGAKGLEFPVVFLLGAT--------------- 561

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                        +     EE  RL+YV +TRA   L 
Sbjct: 562 ----------------------------QVSTFRSEETKRLIYVALTRAKQLLY 587


>gi|238762127|ref|ZP_04623099.1| Helicase IV (75 kDa helicase) [Yersinia kristensenii ATCC 33638]
 gi|238699474|gb|EEP92219.1| Helicase IV (75 kDa helicase) [Yersinia kristensenii ATCC 33638]
          Length = 684

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 83/247 (33%), Gaps = 33/247 (13%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK----KSQDEFIKIRD 112
           +Q +   E  +    + +      + + +   +  +       ++       +   +  +
Sbjct: 320 AQAKGWREWLTDELEWDVDDGEFWRDSRLAARLAGRLERWLGLMRMHGGSQAEMIEQADE 379

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                   +     + L   L   ++ A K+   +DF  LI    +LL+K         +
Sbjct: 380 EVRDLFQKR-----IRLMAPLLKAWKTALKEEGAVDFSGLIHQAVNLLEK--------GR 426

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QD S  +  ++ +L +         +    LFAVGD+ Q+IY F GA
Sbjct: 427 FVSPWKHILVDEFQDISPQRAMLLTALRK--------QNKQTCLFAVGDDWQAIYRFSGA 478

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E        +     A           L  ++R    I  V ++             +S 
Sbjct: 479 ELSLTTAFSQNFGAGAE--------CALDTTYRFNDRIGEVANRFIQQNPYQLKKPLNSL 530

Query: 293 TTIRHRS 299
           +    +S
Sbjct: 531 SKGNKKS 537



 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 118/374 (31%), Gaps = 45/374 (12%)

Query: 311 WEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           W+Q  S+  +Q    +E  T   +      +    S LA R+A  +   +G   +    +
Sbjct: 311 WQQQCSEKKAQAKGWREWLTDELEWDVDDGEFWRDSRLAARLAGRLERWLGLMRMHGGSQ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKDLMA 423
             +I+  D  V    +K   L+  L +     LK +  +   G     +      + +  
Sbjct: 371 AEMIEQADEEVRDLFQKRIRLMAPLLKAWKTALKEEGAVDFSGLIHQAVNLLEKGRFVSP 430

Query: 424 LGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
               ++ +  D+S    +          ++ LF   +D          E      + Q F
Sbjct: 431 WKHILVDEFQDISPQRAMLLTALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSQNF 490

Query: 474 ANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                            I E+ +     +P+     +    KG ++ ++   NE    L+
Sbjct: 491 GAGAECALDTTYRFNDRIGEVANRFIQQNPYQLKKPLNSLSKGNKKSVTILPNEQ---LE 547

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             L+      ++    L        +     K A       +  MT+H +KG ++  V +
Sbjct: 548 SLLDKLSGFVKDDERILILARYHHLRPAILQKVATRWPKLTIDFMTIHASKGQQADYVII 607

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V                         G P    +S   N ++             E  RL
Sbjct: 608 VGLHDGS------------------DGFPAAARESILENVLLPAPEDFPDA----EERRL 645

Query: 651 LYVGMTRASDQLII 664
           LYV MTRA  Q+ +
Sbjct: 646 LYVAMTRAKHQVWL 659


>gi|290473827|ref|YP_003466701.1| DNA helicase IV [Xenorhabdus bovienii SS-2004]
 gi|289173134|emb|CBJ79907.1| DNA helicase IV [Xenorhabdus bovienii SS-2004]
          Length = 687

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 98/302 (32%), Gaps = 25/302 (8%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           ++ R G +     +  +     +         K   L  +          +  +Q S+ +
Sbjct: 261 IQERLG-AKEIQAKTFHALALHIIQQGSHTAPKMSELETDAQKRRDFLINEWQKQCSEKK 319

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              + +    +  L  +    +    +++  +  D  E+  +        +         
Sbjct: 320 AQAKGWREWLNQELDWQLPEGEYWHDKQLTIRLSDRLERWLELMRMHGGSQKEMIEQASP 379

Query: 121 KSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
                    + L   L   ++ A K    +DF  LI    ++L+K         +     
Sbjct: 380 AYADTFQKRIRLMAPLLKAWKSALKSEGAVDFSGLIHQAVNILEK--------GRFISPW 431

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            HIL+DE QD S ++ +++ +L           +    LFAVGD+ Q+IY F GAE    
Sbjct: 432 KHILVDEFQDLSPLRAKLLAALR--------VQNKQSHLFAVGDDWQAIYRFSGAELMLT 483

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                         G + +   L  ++R    I  + ++      N       S T    
Sbjct: 484 TAFSTYF-----GEGAESAECTLDTTYRFNDRIGEIANRFIRQNPNQLNKPLHSLTKGTK 538

Query: 298 RS 299
           +S
Sbjct: 539 KS 540



 Score = 42.6 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 110/378 (29%), Gaps = 50/378 (13%)

Query: 311 WEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           W++  S+  +Q    +E      D      +      L  R++  +   +    +    +
Sbjct: 311 WQKQCSEKKAQAKGWREWLNQELDWQLPEGEYWHDKQLTIRLSDRLERWLELMRMHGGSQ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKDLMA 423
           K +I+          +K   L+  L +     LK++  +   G     +      + +  
Sbjct: 371 KEMIEQASPAYADTFQKRIRLMAPLLKAWKSALKSEGAVDFSGLIHQAVNILEKGRFISP 430

Query: 424 LGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
               ++ +  DLS +             +S LF    DD   I         +      +
Sbjct: 431 WKHILVDEFQDLSPLRAKLLAALRVQNKQSHLFAVG-DDWQAIYRFSGAELMLTTAFSTY 489

Query: 474 ANCGISKFQ-------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
              G    +            I E+ +     +P+     +    KG ++ +     E  
Sbjct: 490 FGEGAESAECTLDTTYRFNDRIGEIANRFIRQNPNQLNKPLHSLTKGTKKSVVILSQEQ- 548

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             L+  LN          + L        +     K +    +  +  MT+H +KG +S 
Sbjct: 549 --LEALLNKMSGYVTKQETILLLGRYHHFKPEFLKKASTRWPNLNIEFMTIHASKGQQSD 606

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V ++                  P+        +        +                E
Sbjct: 607 YVIILGLQQGQ-------DGFPAPARESVLEQVLLPQPENFPD---------------AE 644

Query: 647 YNRLLYVGMTRASDQLII 664
             RLLYV +TRA  Q+ +
Sbjct: 645 ERRLLYVALTRAKKQVWL 662


>gi|227550046|ref|ZP_03980095.1| superfamily I ATP-dependent helicase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227077892|gb|EEI15855.1| superfamily I ATP-dependent helicase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 682

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 70/519 (13%), Positives = 139/519 (26%), Gaps = 113/519 (21%)

Query: 2   KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
                ++  +      +D   +          + S ++             L+       
Sbjct: 53  HKVLAVTFTQRAAGEMRDRLRVLGIGGVQARTFHSAALR-----------QLRYFWPQIA 101

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMF 120
            +  + LL + F       +   +         DL  +++ ++   I   D         
Sbjct: 102 GDLPWRLLDNKFPLVGRAARAAGLDSG-KDMVRDLLGEIEWAKASVIGAEDYAEKVAATK 160

Query: 121 KSTLASLTLAKYLNAHYEEAKKK---------------NCVLDFEDLIINTNDLLKKRDV 165
           ++  A       +   YEEAK                    L                + 
Sbjct: 161 RTLPADPAKVAQVYRLYEEAKTSPEGMLLDFDDLLLHVAGAL----------------EN 204

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
           +  +  +   +    ++DE QD + +Q  V+          +        L  VGD  Q+
Sbjct: 205 APAVAEEFRTQYQTFVVDEYQDVTPLQQRVL----------EGWLGQRDDLTVVGDANQT 254

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IYSF GA P  +L   R  +          ++++L   +RST  +  + + V S      
Sbjct: 255 IYSFTGATPDYLLNFSRTYRH--------ATVVKLQRDYRSTPQVTDLANTVISRATGR- 305

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                + T +     R                           + SY D   +       
Sbjct: 306 ----AAGTRLELEGMRPPGPAPT--------------------YASYDDEPTE------- 334

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
           AR +A  I +++             + A++I VL R    +            D  I   
Sbjct: 335 AREVARAIRSLLDAG----------VPAREIAVLYRINAQSAAFEAA----LADAGIVYQ 380

Query: 406 GNDRFILTDHLAIKD----LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
                       I++    L+A  R     +D ++      +PL   S  +      +  
Sbjct: 381 VRGGEGFFHRAEIREAINTLVAAARRDDLPDDPVAIARAAFAPL-GLSAQEPEGAQARER 439

Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                             +   +   +  L   A+   P
Sbjct: 440 WQTLNALVDLIEEIVNTHEASTLTDVLRSLRQRAEAKQP 478



 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 66/256 (25%), Gaps = 38/256 (14%)

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            E    L+  ++          +S L +++  L Q     +       + V + ++H AK
Sbjct: 437 RERWQTLNALVDLIEEIVNTHEASTLTDVLRSLRQRAEAKQPPSV---DGVTLASLHAAK 493

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VFLV          H  K                                    
Sbjct: 494 GLEWDAVFLVGLVENTLPISHAIK---------------------------------AGD 520

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           +  EE  RL YVG+TRA + L +          + ++     +   +   D      +L 
Sbjct: 521 AQVEEERRLFYVGITRAREHLSMSWSLARQEGGRKSRSRTRFLDGIAPELDVEKSPDRLR 580

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                         T   +      +   +   D     K     +  D  +P  +  S 
Sbjct: 581 -RSRACRVCGNPLDTPAEKALGRHADCEPEYNEDAFLALKAWRLDVARDAGQPAYMVFSD 639

Query: 762 IDTKGKTNLESLLSDN 777
                           
Sbjct: 640 ATLLAIAETMPSTEAE 655


>gi|255729194|ref|XP_002549522.1| hypothetical protein CTRG_03819 [Candida tropicalis MYA-3404]
 gi|240132591|gb|EER32148.1| hypothetical protein CTRG_03819 [Candida tropicalis MYA-3404]
          Length = 638

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 87/567 (15%), Positives = 163/567 (28%), Gaps = 149/567 (26%)

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
               +N +L + D I +  +L+         + +I ++++  ++DE QD      + I  
Sbjct: 165 RRFHENGILTYHDFISSAIELI------DVSQGEIVKDVSVFIVDEFQDMQPELVKFIEK 218

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L E            + +   GD  Q IY F G+ P+      +  + +          I
Sbjct: 219 LIE---------FDGKHITLAGDRNQCIYGFLGSYPEITRNFIKRLKWKYDE-------I 262

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            L  SFR T + + + + + S   +   + E S   +                       
Sbjct: 263 FLKESFRLTPENMVIANSLMSEDTHLISMKESSAEPL----------------------- 299

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                            +    S       IA  I  +I             ++  D +V
Sbjct: 300 -----------------IVDIESPQTEYNFIAREIYRLILQSGGL-------LKFSDFIV 335

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSF 437
           L R  K+   I        ++Y  +V          +  +   + +   +  S+  D++F
Sbjct: 336 LARSNKEVETIANFV---TSEYGYNVNRFTSGNDWINSKVHIFLDILDVLRKSKGSDMAF 392

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
           + +L++     S+  + K+  +      V++  ++       K   V    +    +   
Sbjct: 393 LFILQN--LGISKIFLRKLYEKYE----VWDSHKQIRFEDFLKLPKVKDLFNTDRRLKSK 446

Query: 498 CSPHDFF--------------------TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
               +F                     + I+               +  +      +   
Sbjct: 447 SIIDNFIGIIAEERQIFTNPVEVMISLSRIINETSLINYLNKTDDTKDKESSFGLADNLE 506

Query: 538 RNEQNSYSSL---QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              ++  +S      L   L  Y     R      N + I T+H AKGLE PVVFL    
Sbjct: 507 GFHRSLKASYLKNPSLEYFLRNYQDEEPRLDD---NAINISTIHKAKGLEFPVVFLT--- 560

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                                                       L+ +  EE  RLLYV 
Sbjct: 561 -----------------------------------------KSRLQFAKTEEEKRLLYVA 579

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTW 681
           MTRA + L                 +W
Sbjct: 580 MTRAKNLLYCNLSKQERGVPVVVNPSW 606


>gi|237809167|ref|YP_002893607.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
 gi|237501428|gb|ACQ94021.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
          Length = 604

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/538 (12%), Positives = 143/538 (26%), Gaps = 147/538 (27%)

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            ++  ++D++D+++    L+ + D   W+   +  +   + +DE QD  +    +++ L 
Sbjct: 185 LRQGGLIDYDDMVVYGQRLIAEHD---WVLPLVQAKFPVLAVDEYQDLGVALHRIVKRLA 241

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            D             LFAVGD  QSIY F GA+   ++              +    + L
Sbjct: 242 FD---------GGVRLFAVGDADQSIYGFTGADGALLMELAER---------EDIEPVRL 283

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            L++RS A I++                                                
Sbjct: 284 QLNYRSGAGIVSA---------------------------------------------SE 298

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
               +   + +   +        +    +A   ++ +      +   K      DI +L 
Sbjct: 299 MALGEDRGYRANDPTRQATIEFVLCPDGLADQAAHAVAQIIPVALDSKPGRTLGDIAILY 358

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
              +   ++         DY           +     ++D  A                +
Sbjct: 359 TDYRAGDIVAKAVAAGGFDYIRVDTAAPYRKVALTSWVEDCAAWC---------AGGWRI 409

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            +  L    +  +                                  + +     +    
Sbjct: 410 ARPQLRGLIDRYLAFH----------------------------RANLDDAQARREGQEL 441

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL----NFTLRNEQNSYSS-LQELISELE 555
                 +   ++  + F++        +LD  L    +   + EQ    +        L 
Sbjct: 442 TALLWALRADQQSARDFVASL---RNGILDRLLVAESSLADQKEQLDRMTAALAEGGALA 498

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                       + + + ++T+H+AKG E  VV +V         + +            
Sbjct: 499 TLDIASLGGRDGSPDHLNLLTLHSAKGCEYDVVIMVGLDYGSLPWRKLSP---------- 548

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                         E  RL YVG+TRA D++ +         
Sbjct: 549 --------------------------EKLRESRRLFYVGLTRARDEVHMLYSGFVEGR 580


>gi|29348408|ref|NP_811911.1| helicase IV [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340312|gb|AAO78105.1| helicase IV [Bacteroides thetaiotaomicron VPI-5482]
          Length = 870

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 76/212 (35%), Gaps = 25/212 (11%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           P+ +   +   +        +K S     ++  +       +S      + + +   Y+ 
Sbjct: 467 PKGSKQEKAFIRLVVTFVTLVKSSCKSVKEVLKQAKNAGDERSVFIIKNIFQPVYERYKS 526

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           A   +  +DF D I+   ++ +   +            ++I++DE QD S+ ++  ++ L
Sbjct: 527 ALSDSNQIDFTDAILQATEICRTTHLVE---------YDYIIVDEFQDISVDRYNFLKVL 577

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
            E         + P  L+ VGD+ QSIY F G++     +                 I +
Sbjct: 578 REG--------NPPAKLYCVGDDWQSIYRFSGSDMALFNQFPEYFGT--------TEINK 621

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           +  ++R    ++++  +              S
Sbjct: 622 IETTYRFGEPLVSLSSRFIQRNNAQIKKDIHS 653


>gi|150014905|ref|YP_001307159.1| ATP-dependent nuclease subunit AddB [Clostridium beijerinckii NCIMB
            8052]
 gi|251764545|sp|A6LPC3|ADDB_CLOB8 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|149901370|gb|ABR32203.1| ATP-dependent nuclease subunit AddB [Clostridium beijerinckii NCIMB
            8052]
          Length = 1159

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 127/992 (12%), Positives = 278/992 (28%), Gaps = 216/992 (21%)

Query: 91   KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE--AKKKNCVLD 148
            +   ++  ++     ++    D         +        K L   YE    K     +D
Sbjct: 117  QGFNEIISEVISEFKKYNISIDSIRAIDEKINDAELYQKVKELMIIYEAFNLKMHENYID 176

Query: 149  FED-LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
             +D L +    LL+                + + IDE    +  Q ++I+ L +      
Sbjct: 177  GDDELTLLDKKLLESSAYVD----------SEVWIDEFTSFTPQQLDIIKVLAKRC---- 222

Query: 208  NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                  R +                         +     + +    F+II+   +    
Sbjct: 223  ------RRVNITFCID-----------------NKSLNNNSEDITDVFNIIKSTEN---- 255

Query: 268  ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
              IL    K+      A     +    I +R     ++  ++ +      ++   NP+  
Sbjct: 256  -KIL----KIMKENNIAYDKPVNLNNAIPYRFKGNLELDHIEKYFFSYPFNEYDKNPESI 310

Query: 328  SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
            +     +   +         R++ +I++++              + +DI V+ R   D  
Sbjct: 311  TLYKASNIYDEI-------ERVSKSITSLVRE---------NGYRYRDISVVCRNIDD-- 352

Query: 388  LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
                +   +  DY I    + +  L  +  I  + +    +L      S    LKS L  
Sbjct: 353  -YEKIISVIFKDYNIPYFLDKKIQLLSNPLIVLISSAFEILLKNWSYESVFKYLKSGLTG 411

Query: 448  FSEDDIFKI-------------CTQRHETETVYEYIQKFANCGISKFQHVIKYIH----- 489
                 I ++              T +      +                +++ I      
Sbjct: 412  IDNSYIDRLENFILEYGVKGYKWTSKEIVNEKWFRGNGELTDDKVLIAEIMEEIRYPLMT 471

Query: 490  ----------------ELIHIAQFCSPHDFFTLIL---GAKKGRQQFISRFGNE--VIDV 528
                             +          D     +          +       E  VID+
Sbjct: 472  FHNKVNGKHKVKDICSAIYEFLVDVKVFDRINEWIKNFEELGLEDKVKEYSQVESIVIDI 531

Query: 529  LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            +D+ ++     E+  YS    ++S    +            ++V I  +   KG +  V+
Sbjct: 532  IDQAVDVIGE-ERLEYSEFFRILS--SGFANEEIGIIPVALDQVNIGDIARIKGRDVKVL 588

Query: 589  FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            ++V     V      ++  +        G       S +RN +              E  
Sbjct: 589  YIVGINDGVLPASKKEEGLLSDRDRTTLGEVGINLSSTTRNKVF-------------EEQ 635

Query: 649  RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI---------- 698
             LLY+ +T +S+ L++         K          +   F N      I          
Sbjct: 636  YLLYMALTISSEYLMLSYPMADFEGKSLRPSIVISRIKKIFPNLIEESAIYDLKILENKF 695

Query: 699  -----KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF--------- 744
                  +         +  ++   + E    E  E  K   + +   K +F         
Sbjct: 696  GKIIAPIPTFNELIISMRKDFDKEYIEPYWSEVYEWFKNNDEFRDKVKNIFKGLSYSNIG 755

Query: 745  --------SPIKNDINEPYILNPSTIDTKGKTNLESLLS-----------DNQTFNRGLI 785
                      +  +  E  + + S ++   +      +            +    + G  
Sbjct: 756  DKVSKNKLRKLYQNDLEKLVFSVSKLEKYAECPFSYFVQYGLKAKNRKVYEFTPPDLGSF 815

Query: 786  IHKLLQ-----------VIFTLPEHKRKNFITSYCTK------NAKLWPAKEYKNLLLSI 828
            +H++L            +   L   K K  I++   K      N+ L   K++K L    
Sbjct: 816  VHEMLDSFTNKVREDGVLWSDLSNEKCKEIISNLIDKKLMDESNSILNSTKKFKYLAQRF 875

Query: 829  TRLLEN--------------PMMTTAMSCDSYS--EVSVSGKINCPKKDIIISGRIDQ-- 870
             R++                 +  T     SYS  E +++  +N   + + + GRID+  
Sbjct: 876  KRVISKSVSVIASQIGKGEFEVFKTEFDFGSYSSGE-AITLDLN-DNEKVYLQGRIDRID 933

Query: 871  -ISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLV-CLL 924
             + +  +    I +YKT      ++  I Y    QL +Y   L        +K +    +
Sbjct: 934  KLDLDGETYIRIIDYKTGAKKF-DLNEIYYGLQVQLLVYLDALIKNSKYILDKQVKPGAI 992

Query: 925  IYVSEPKVF-----IIPQNKLN-KAFAEISTK 950
            +Y             +   ++  +  + +  K
Sbjct: 993  LYFKIDDPIIKSKKEMTDEEVEKEVLSALKMK 1024


>gi|332162162|ref|YP_004298739.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|318606214|emb|CBY27712.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666392|gb|ADZ43036.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 684

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 36/203 (17%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            E ++++ +E   +  +             + L   L   ++ A K+   +DF  LI   
Sbjct: 371 AEMIEQADEEVRDLFQKR------------IRLMAPLLKAWKAALKEEGAVDFSGLIHQA 418

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +LL+K         +      HIL+DE QD S  +  ++R L +         +    L
Sbjct: 419 VNLLEK--------GRFVSPWKHILVDEFQDISPQRAMLLRVLRK--------QNKQTCL 462

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           FAVGD+ Q+IY F GAE        +   + A           L  ++R    I  V ++
Sbjct: 463 FAVGDDWQAIYRFSGAELSLTTAFSQNFGESAE--------CALDTTYRFNDRIGEVANR 514

Query: 277 VFSIPENAQGLSEDSTTTIRHRS 299
                        +S +    +S
Sbjct: 515 FIQQNPYQLKKPLNSLSQGNKKS 537



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 115/374 (30%), Gaps = 45/374 (12%)

Query: 311 WEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           W+Q  S+  +Q    +E  T   +      +    S LA R+A  +   +G   +    +
Sbjct: 311 WQQQCSEKKAQAKGWREWLTDELEWDIDDGEFWHDSRLAARLAGRLERWLGLMRMHGGSQ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKDLMA 423
             +I+  D  V    +K   L+  L +     LK +  +   G     +      + +  
Sbjct: 371 AEMIEQADEEVRDLFQKRIRLMAPLLKAWKAALKEEGAVDFSGLIHQAVNLLEKGRFVSP 430

Query: 424 LGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
               ++ +  D+S    +          ++ LF   +D          E      + Q F
Sbjct: 431 WKHILVDEFQDISPQRAMLLRVLRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSQNF 490

Query: 474 ANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                            I E+ +     +P+     +    +G ++ +    +E    L+
Sbjct: 491 GESAECALDTTYRFNDRIGEVANRFIQQNPYQLKKPLNSLSQGNKKSVVILPSEQ---LE 547

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             L+      ++    L        +     K         +  MT+H +KG ++  V +
Sbjct: 548 SLLDKLSGFVKDDERILILARYHHLRPEILQKATTRWPKLTIDFMTIHASKGQQADYVII 607

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                   S   + +  I+  +   P                             E  RL
Sbjct: 608 AGLHEGNDSFPAVVRESILEDVLLPPPEDFPD----------------------AEERRL 645

Query: 651 LYVGMTRASDQLII 664
           LYV MTRA  Q+ +
Sbjct: 646 LYVAMTRAKHQVWL 659


>gi|110680702|ref|YP_683709.1| ATP-dependent DNA helicase [Roseobacter denitrificans OCh 114]
 gi|109456818|gb|ABG33023.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter
            denitrificans OCh 114]
          Length = 1770

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/386 (15%), Positives = 125/386 (32%), Gaps = 39/386 (10%)

Query: 33   KYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK 92
            K   L  +T + +  K  + L   +Q   + +  +  +   L    + +  ++   +++ 
Sbjct: 1138 KARELRRQTTSASWKKIVEDLGNKTQESIVADDRASTNVLVLAGPGSGKTRVL---VHRV 1194

Query: 93   SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-------------LTLAKYLNAHYEE 139
            +  L+ K +  +   +   +R    ++     A                LA  L      
Sbjct: 1195 AYLLRIKREDPRGILVLAYNRHAASEIRTRLAALVGEDARGVTICTCHALAMRLVGASFS 1254

Query: 140  AKKKNCVLDFEDLIINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
                    DF+ ++ +   LL         +   R  +      IL+DE QD    ++ +
Sbjct: 1255 GFDAQNA-DFDRIVTDAAGLLNGDGLSKSEAEAQRDSLLDGYRWILVDEYQDIGPEEYAL 1313

Query: 196  IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
            I ++               +LFAVGD+ Q+IY+F GA    + + +     R +      
Sbjct: 1314 ISAVAGRSLE---DADLKLSLFAVGDDDQNIYAFTGASVDFIRQFEADYHARPS------ 1364

Query: 256  SIIELPLSFRSTADILTVVDKVFSIPENA----QGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                L  ++RSTA I+   + V           Q +  ++  ++ +   R+     V   
Sbjct: 1365 ---FLIENYRSTAHIIAASNSVIEPAPGRMKAEQAIRINAARSVGNPGGRMADADPVAQG 1421

Query: 312  EQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL--ARRIAYTISNMIGTDTIFSNGKKR 369
               +        PQ  +       L           A  I+    ++    +        
Sbjct: 1422 RVQLLDVPPGPKPQAIAAIDELLRLCALDPQWDWRKAAVISRDWKSLDAVRSYAEAKGIS 1481

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRF 395
            V  A + L  + + ++T       R 
Sbjct: 1482 VDMANEDLPTIWRLRETQAFVAALRA 1507


>gi|189467293|ref|ZP_03016078.1| hypothetical protein BACINT_03679 [Bacteroides intestinalis DSM
           17393]
 gi|189435557|gb|EDV04542.1| hypothetical protein BACINT_03679 [Bacteroides intestinalis DSM
           17393]
          Length = 871

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 82/240 (34%), Gaps = 33/240 (13%)

Query: 48  KKAQTLQQASQTQCI---EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
                L++      +   E+    L    L     P+ +   +   +        +K S 
Sbjct: 438 DIRGKLRKLLDDAGVPIQEKTDEELYDLVL-----PKGSKQEKAFIRLVVTFVTLVKSSC 492

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
               +I  +       +S      + + +   Y  A   +  +DF D I+   ++ +   
Sbjct: 493 KSVKEILKQAKNVDDERSVFIIKNIFQPVYERYISALSDSNQIDFTDAILQATEICRTSH 552

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                        ++I++DE QD S+ ++  ++ L           + P  L+ VGD+ Q
Sbjct: 553 PVE---------YDYIIVDEFQDISVDRYNFLKVLR--------VGNPPAKLYCVGDDWQ 595

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY F G++     +  +              I ++  ++R    ++++        ++ 
Sbjct: 596 SIYRFSGSDMALFNQFPKYFGA--------TEINKIETTYRFGEPLVSLSSHFIQRNKSQ 647



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 23/105 (21%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              ++  +TVH +KGLE+  V L+                               P   S
Sbjct: 721 GERKIEFLTVHKSKGLEADYVILLQCNKDT----------------------YGFPSLVS 758

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS-DQLIICKHSNTS 671
            + +++ ++    +    E  RL YV +TRA    L++      S
Sbjct: 759 DDPVLNYVLTKSDQYPYGEERRLFYVAITRAKVKTLVLYDKRFPS 803


>gi|118595078|ref|ZP_01552425.1| helicase IV [Methylophilales bacterium HTCC2181]
 gi|118440856|gb|EAV47483.1| helicase IV [Methylophilales bacterium HTCC2181]
          Length = 955

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 98/306 (32%), Gaps = 35/306 (11%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL--TLAKYLNAHYEEAKKKNC 145
           E  K         K   +    +R+RFN      +    L   L + L   YEE  K+  
Sbjct: 503 EFAKICGPFLNLFKGKNESIDALRNRFNEDNAQDNKRILLFLDLFQELFQLYEEELKRLN 562

Query: 146 VLDFEDLIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            +DF D+I   N+ +L                  +IL+DE QD S  + ++I +L +++ 
Sbjct: 563 EIDFHDMINEANEVILNTN---------CYTNFKYILVDEFQDISFGRAKLITNLQKNY- 612

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      L +VGD+ QSIY F GA+   +   K+             + + L  +F
Sbjct: 613 -------PRIKLLSVGDDWQSIYRFTGADIDLMTNFKKYFGY--------TNQLFLTKTF 657

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTT---IRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
           R  + I  V  +              +         +     +     L   V     + 
Sbjct: 658 RFNSSIEKVASQFIRKNSKQIDKEIKAHNISNSPNVKLFYPNKKSGKFLENIVREISLNC 717

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
               +  +    +   +      L + IA     +I         K        IL L R
Sbjct: 718 SKHSKVLFLGRNNHNEEGVDYRAL-KAIAPK---LIFEFRTVHRAKGYEADYVVILDLKR 773

Query: 382 KRKDTP 387
            R   P
Sbjct: 774 ARNGFP 779



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 22/92 (23%)

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH AKG E+  V ++D                              P     + I++ +
Sbjct: 754 TVHRAKGYEADYVVILDLKRARNGF----------------------PNEMVDDPIINIM 791

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           +   +     E  RL YV +TRA   + +  H
Sbjct: 792 LSENEAYNHAEERRLFYVALTRAKHLVYVIAH 823


>gi|325001476|ref|ZP_08122588.1| UvrD/REP helicase [Pseudonocardia sp. P1]
          Length = 836

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 78/734 (10%), Positives = 176/734 (23%), Gaps = 148/734 (20%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV-------- 146
           +L+E L ++ +  +   +                 A      YEE               
Sbjct: 151 ELRELLLRAAERGLGPAELAGLGTAHGRDE--WVAAARFFRTYEEVTLLRGAAGRSAPQA 208

Query: 147 ----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
               LD  +L+    D          +R +  + + H+L+D+ QD    Q E++ +L  D
Sbjct: 209 TAPALDSAELVAAALD---ALAADPGLRDQERERVRHLLVDDAQDLDPQQMELVATLAAD 265

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                            GD  Q++ +F GA+P+ +                      L +
Sbjct: 266 AES----------TLLAGDPDQAVLTFRGADPQGMNAI-------------DAPTEVLTV 302

Query: 263 SFRSTADI----LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT----------- 307
             R    +    L + +K+             +       +    +              
Sbjct: 303 DHRRQPGVRAAGLRLAEKLPGAGPARNRPGHAAGDQRPDGARTDDRPDEQADGAPADGSR 362

Query: 308 -------VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI---------AY 351
                             D                    +  +  A ++         A 
Sbjct: 363 AGAGGAADGTGAGAGRPVDGDGAGAGRPVGGGGMEARPRAEDAGDAVQVRVFGSPSAEAG 422

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG-NDRF 410
            I++ +    +        +   ++ VL R            R       + +    D  
Sbjct: 423 WIADRLRRAHLVD-----GVPWSEMAVLSRS---ARRTLPALRRALAAAGVPIAAPPDEV 474

Query: 411 ILTDHLAIKDLMALGRFILSQE--DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
            L    A+  L+ + R        D      +L SPL       + ++            
Sbjct: 475 PLPRQPAVVPLLLVLRAASRPSAIDADLATSLLTSPLGGGDPLRMRRLRRGLLRMHAAAG 534

Query: 469 YIQK-----------------------------------------FANCGISKFQHVIKY 487
           +  +                                          +    +  + V + 
Sbjct: 535 HDVRVVPDDDHPDPGEVDPAVASSDPLLVAMLREAVGGRPDPLVMLSPAEAAPMRDVGRL 594

Query: 488 IH-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---------DVLDEFLNFTL 537
           +      IA   S  D   L+       +++                  D +    +   
Sbjct: 595 LDTAARSIASGDSVEDTLWLVWRRTGLAKRWSDASARGGPGGAAADRDLDAVLALFDAAA 654

Query: 538 RN-EQNSYSSLQELISELEQYPP--TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
           R  ++   + +   +  L             +     V +++ H ++G E  VV +    
Sbjct: 655 RYTDRLPGADVGGFLEYLADQQLPGETLAPQAPRGGAVELLSAHGSRGREWTVVAVPGVQ 714

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             ++    ++   +      D    +  P S                    E  RL +V 
Sbjct: 715 EGLWPDLRLRGSLLGHEQLVDLVAGVAEPGSAV----------SRSAPLLAEERRLFHVA 764

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            TRA   L++        +             D+       +  +  + +  +       
Sbjct: 765 CTRARSALLVSAVQGEDEQPSRFLDELDPRPADATEARPVHRPER--SLVMAELVGELRR 822

Query: 715 STHHPENTPLEREE 728
           +   P++    +  
Sbjct: 823 AVTAPDHGDPAQAA 836


>gi|296169034|ref|ZP_06850696.1| excision endonuclease subunit UvrD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295896293|gb|EFG75952.1| excision endonuclease subunit UvrD [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 728

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 61/495 (12%), Positives = 132/495 (26%), Gaps = 72/495 (14%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTIL----KKAQTLQQASQTQCIEERFSL 68
                +        ++  ++         G    L       + L+        +  + L
Sbjct: 90  AVTFTQRAAGEMRSRLRTLDAAAGTDTGVGGVQALTFHAAAHRQLRYFWPRVVGDTGWQL 149

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
           L + F        ++ I    +    DL  +++ ++   I   +           +    
Sbjct: 150 LDTKFAVVARAASRSRINASTDD-VRDLAGEIEWAKASLIGPEEYPAAVAAAGRDIPLDA 208

Query: 129 L-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                + A YE  K ++  +   D            +  A +  +        ++DE QD
Sbjct: 209 ARVATVYAAYEALKVRDESVTLLDFDDLLLHTAAAIENDAAVADEFRGRYRCFVVDEYQD 268

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +Q  V+++   D             L  VGD  Q+IYSF GA P+ +L   R     
Sbjct: 269 VTPLQQRVLQAWLGD----------RDDLTVVGDANQTIYSFTGASPRFLLDFSRRYP-- 316

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   +++ L   +RST  ++++ ++V +           + + +     R      
Sbjct: 317 ------DATVVRLERDYRSTPQVVSLANQVIAAARGR-----VAGSKLHLVGQRPPGPAP 365

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                                      S  +       A  +A +I+ +I   T      
Sbjct: 366 ---------------------------SFRENPDEPAEAAAVAASIARLIEAGTP----- 393

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
                  +I VL R    +               I               IK  +   + 
Sbjct: 394 -----PSEIAVLYRVNAQSEAYEEALTE----AGIPYQVRGGEGFFTRQEIKQALLALQR 444

Query: 428 ILSQEDDLSFVCMLKSPL--FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
              +  +     ++++ L     + +       +                        + 
Sbjct: 445 AAERGAEGPLPAVVRAVLEPLGLTAEPPVGTRVRERWEALTALAELVDDEVAQRPQLDLA 504

Query: 486 KYIHELIHIAQFCSP 500
             + EL   A    P
Sbjct: 505 GLLAELRLRADARHP 519



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 76/336 (22%), Gaps = 39/336 (11%)

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
                   E    Y+           + +  +  +                  +L     
Sbjct: 408 EAYEEALTEAGIPYQVRGGEGFFTRQEIKQALLALQRAAERGAEGPLPAVVRAVLEPLGL 467

Query: 514 RQQF-ISRFGNEVIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
             +  +     E  + L            Q     L  L++EL                 
Sbjct: 468 TAEPPVGTRVRERWEALTALAELVDDEVAQRPQLDLAGLLAELRLRADARHPPVVQG--- 524

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + ++H AKGLE   VFLV          H                             
Sbjct: 525 VTLASLHAAKGLEWDAVFLVGLADGTLPISH----------------------------- 555

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---SNTSNEKKSNQRTWYDMVYDS 688
              L    +    EE  RLLYVG+TRA   L +      S    + +   R    +   +
Sbjct: 556 --ALAHGPESEAVEEERRLLYVGITRARTHLALSWALARSPGGRQGRKPSRFLNGIAPQA 613

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
             +    K  +      +      + +T                  +     K     + 
Sbjct: 614 RADAGPTKSRRNRGPAARCRVCNKDLATAAAVMLRRCETCAGDVDEELLLRLKAWRLDVA 673

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
            +   P  +  +         L     D      G+
Sbjct: 674 KEQKVPAYVVFTDNTLIAIAELRPGDEDALIAIPGI 709


>gi|160895395|ref|ZP_02076165.1| hypothetical protein CLOL250_02953 [Clostridium sp. L2-50]
 gi|156862966|gb|EDO56397.1| hypothetical protein CLOL250_02953 [Clostridium sp. L2-50]
          Length = 1128

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 90/733 (12%), Positives = 213/733 (29%), Gaps = 134/733 (18%)

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +           +   ++   T+  D+  +          +A TI  ++           
Sbjct: 292 ERNLFRSPYQKWKQPLERIHLTATGDAQDEIV-------FVASTIRRLVRE--------- 335

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + KDI ++    +    I        ++Y+I V  +    L  +   + + ++   +
Sbjct: 336 KGYRYKDIAIVAGDLEQASHIYERVM---DEYEIPVFIDANACLKANPCAETIRSVLAVL 392

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKF------ 481
                  S    LK+ + + S +DI  +           Y    +  +    K       
Sbjct: 393 ADDFSYDSVFRFLKAGMTDLSFEDIELLENYALKRGVRGYSRWNRAVSENYEKTSPVNIE 452

Query: 482 ---QHVIKYIHELIH-----IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV-LDE- 531
              Q  +K   ++        A      +     L      ++  +R      +  ++E 
Sbjct: 453 EIRQAFMKMFGDIRKVFADKKAVTKDYVEALYDFLLQIHMYEKLEARKNELYEENRINEG 512

Query: 532 ------------FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVH 578
                         +       ++  S++E    ++     I+        + V I  + 
Sbjct: 513 DAYGQIFEKTVRLFDKIAELLGDTKMSVKEFYEIVDTGLSDIEVGVVPPTVDRVLIGDIT 572

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-IWIPQSKSRNNIVSDLIK 637
            ++     V+F       +      K   +     D      + +  S  +N+ +     
Sbjct: 573 RSRLNHIKVLFFTSVNDGIVPKAPKKGRILSDRDRDILSDCGLELAPSDKQNSYIEQFY- 631

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                        +Y  +T+ SD L I  H  +++ +          +   F + +  + 
Sbjct: 632 -------------IYTILTKPSDYLYISYHKLSASLESMRPSYLLGRISSIFPSLQAEEY 678

Query: 698 -----IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                +  T + +    +  E S                   +   I K        +  
Sbjct: 679 DAASCMPDTVNRSLRRILRAEDSEDAESRILTRILTEKGFAGELTAIYKGRTYRNVAEQL 738

Query: 753 EPYIL----------NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ 791
            P  +          + S ++   +              E  +      N G+I+H +++
Sbjct: 739 PPETIALLYGRYLHASVSKLELYARCGFAYFLKYGLRLKEREMYQVDVRNVGVILHSVME 798

Query: 792 VIF------------TLPEHKRK----NFITSYCTKNAKLWPAKEYKN--LLLSITRLLE 833
            +F              PE +R       +     ++A  +     +N  +L  I R+ +
Sbjct: 799 GLFKQVRDTRNNDWENFPEDERMLMVTELVNRAAEESAGDFFEDNARNAYMLQMIERMAQ 858

Query: 834 NPM--MTTAMSCDSYSEVSVSGKINCPKKDI-------------IISGRIDQ--ISISQQ 876
                +   +   S     +    +  K ++              I+G+ID+  +     
Sbjct: 859 TSAGMLQKHIRLGSMKPGMLEKTFDSAKDEVGSYLFELPNQIQMSINGKIDRVDVEEEDG 918

Query: 877 NIFI--FEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCL--LIYVS 928
            ++I   +YK+       +E I      QL  Y  I     K  YP+K++     L Y  
Sbjct: 919 TVYIKVIDYKSSARK-LSLEEILNGEQLQLVTYSAIAYEIEKMIYPDKNIQIAGLLYYSF 977

Query: 929 EPKVFIIPQNKLN 941
           +  V  I  ++++
Sbjct: 978 DDPVIEIESSEID 990


>gi|317497576|ref|ZP_07955894.1| hypothetical protein HMPREF0996_00875 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895135|gb|EFV17299.1| hypothetical protein HMPREF0996_00875 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 332

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 99/320 (30%), Gaps = 42/320 (13%)

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIK-----RAHSANHNEVRIMTVHTAKGLESP 586
            +      E +    L   +  +EQ              S + + VRI ++H +KGLE P
Sbjct: 2   LVEHAKAFESSQIKGLFHFVRFIEQCREYDMDYGEANTMSEDQDLVRISSIHKSKGLEYP 61

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           +VF+     +         M               + +++ +  + + +   + + +  E
Sbjct: 62  IVFVSKIHQKFNLRDGNGSMIFHGDYFIGADHVDPVYRTRKKTILKNLIKNQMTRESLGE 121

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNE----------KKSNQRTWYDMVYDSFHNDERVK 696
             R+LYV MTRA ++LI+        +           + + R+++D +  +     +  
Sbjct: 122 ELRVLYVAMTRAKEKLILTGIKKDDIDWNAKGEVTAIDRLSGRSYFDWIKKALPMIPKQD 181

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPL--EREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                 ++    W        H  N  +  ER        + + + +      +N+    
Sbjct: 182 YRLKLYTLEDLLWQQEGNELLHEMNRQIFYERLNDQIPKENVKVLKESFAYHYRNEAETK 241

Query: 755 YILNPSTID----------------------TKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
             L  S  +                       K   +           ++G IIHK+ ++
Sbjct: 242 GRLKYSVSEIKRMSQAADTEEVMYSSVSMEKEKRIPSFVKKTEKISAASKGTIIHKVFEL 301

Query: 793 IF---TLPEHKRKNFITSYC 809
           +              I  + 
Sbjct: 302 LDFSKDYTMKSLNEDIERWI 321


>gi|238786418|ref|ZP_04630341.1| Helicase IV (75 kDa helicase) [Yersinia bercovieri ATCC 43970]
 gi|238712678|gb|EEQ04767.1| Helicase IV (75 kDa helicase) [Yersinia bercovieri ATCC 43970]
          Length = 684

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 95/303 (31%), Gaps = 30/303 (9%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           +K R  +  +   +  +     +             L  ++     L      QQ S+ +
Sbjct: 261 IKQRLAVD-DIQAKTFHALALQIIQQGSRKTPAISKLESDSKARRSLLIQHWQQQCSEKK 319

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              + +    +  L  + +       + +  +     E+                  +  
Sbjct: 320 AQAKGWREWLTHELAWEVSEGDFWQDKRLAARLAGRLERWLGLM-RMHGGSQAEMIEQAD 378

Query: 121 KSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
           +           L   L   ++ A K+   +DF  LI    +LL+K         +    
Sbjct: 379 EEVRDLFQKRIRLMAPLLKAWKTALKEEGAVDFSGLIHQAVNLLEK--------GRFVSP 430

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             HIL+DE QD S  +  ++ +L +         +    LFAVGD+ Q+IY F GAE   
Sbjct: 431 WKHILVDEFQDVSPQRAMLLTALRK--------QNKQTCLFAVGDDWQAIYRFSGAELSL 482

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                +   + A           L  ++R    I  + ++             +S +   
Sbjct: 483 TTAFSQHFGEGAE--------CALDTTYRFNDRIGEIANRFIQQNPYQLKKPLNSLSKGN 534

Query: 297 HRS 299
            +S
Sbjct: 535 KKS 537



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 102/340 (30%), Gaps = 42/340 (12%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF----LK 397
              LA R+A  +   +G   +    +  +I+  D  V    +K   L+  L +     LK
Sbjct: 345 DKRLAARLAGRLERWLGLMRMHGGSQAEMIEQADEEVRDLFQKRIRLMAPLLKAWKTALK 404

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPLFN 447
            +  +   G     +      + +      ++ +  D+S    +          ++ LF 
Sbjct: 405 EEGAVDFSGLIHQAVNLLEKGRFVSPWKHILVDEFQDVSPQRAMLLTALRKQNKQTCLFA 464

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFF 504
             +D          E      + Q F                 I E+ +     +P+   
Sbjct: 465 VGDDWQAIYRFSGAELSLTTAFSQHFGEGAECALDTTYRFNDRIGEIANRFIQQNPYQLK 524

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +    KG ++ +    +E    L+  L+      +     L        +     K A
Sbjct: 525 KPLNSLSKGNKKSVMILPSEQ---LETLLDKLSGFVKGDERILILARYHHLRPDILSKAA 581

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  +  MT+H +KG ++  V +                          G P    +
Sbjct: 582 TRWPKLIIDFMTIHASKGQQADYVIIAGLHQGS------------------DGFPAVARE 623

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           S   + ++             E  RLLYV MTRA  Q+ +
Sbjct: 624 SILEDVLLPAPEDFPDA----EERRLLYVAMTRAKHQVWL 659


>gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
 gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319]
          Length = 896

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 129/397 (32%), Gaps = 75/397 (18%)

Query: 71  SFFLTQKFTPQKNIITQEINKKSP-DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
             F        K I   +  + +   + +    +Q    +        K        L  
Sbjct: 166 ESFTDDDREAIKQICKSQKREYNEQAVIDTYHHAQQYMDEANVPGLDAKTADRIRVLL-W 224

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
             Y  A Y + K++N +LDFEDL++ T D+    D          +    I +DEVQD +
Sbjct: 225 KMYYAACYAQYKEENHLLDFEDLLLKTYDIYSTDDTC--------KRYKWIQVDEVQDLN 276

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  +I  LT               +  +GDE+Q+I+SF GA+ + +   K        
Sbjct: 277 GMQLAIIDLLTAK---------DNPMVMYLGDEQQAIFSFMGAKVETLTLLK-------- 319

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               K +I  L  + RS   +L V +                        +        +
Sbjct: 320 -MRCKGNIHHLQRNHRSPKYLLDVFN----------------------DYAEKQLKIDRE 356

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L     +   ++ +  +   +S  D   +    + +AR +                    
Sbjct: 357 LLPASDNDVKAKPDDLRIIHSSTID--SERQEVTDVARNLYEQNKE-------------- 400

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +   V+V    D   I+       +   ++        L D   +K L++    + 
Sbjct: 401 ----ERTAVIVSSNSDADHISETM----DKVGLTHFKVSGRDLFDTPDVKLLLSHLSVLA 452

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
           ++ + +++  ++K  +  F    + +    + +   +
Sbjct: 453 NEHNSIAWTRIMKG-VRAFPSHALARRFNWKLKQLAL 488



 Score = 46.8 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 44/182 (24%), Gaps = 47/182 (25%)

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             + EL               I        +++         + +  +    +       
Sbjct: 735 ALVQELSSAYNTLYADGLINEI-PRLDYVLRYLRIDMLTDNTIENALVQQLSQY------ 787

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
                I ++            +    V + TVH AKGLE   V + D     + +   K 
Sbjct: 788 -----IMDINTLKEADFCNSKSIRERVYVTTVHKAKGLEFDNVIVFDAADGRYPNAFNKN 842

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                              K   EE  R  YV M+RA  +L I 
Sbjct: 843 -----------------------------------KKQDEEDARKFYVAMSRAKRRLYIA 867

Query: 666 KH 667
             
Sbjct: 868 YS 869


>gi|50290297|ref|XP_447580.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526890|emb|CAG60517.1| unnamed protein product [Candida glabrata]
          Length = 711

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 148/498 (29%), Gaps = 113/498 (22%)

Query: 151 DLIINTNDLLKKR--DVSAWIRYK-IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DLII  + +L +   D + +   + ++Q    ILIDE QD                    
Sbjct: 184 DLIIRASKILTEPTFDSAEFSFIRDLNQRYKVILIDEFQDL-----------YPQLLPLL 232

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
            T S  + L   GD  QSIY F GA    V        +   +       + L  +FR +
Sbjct: 233 QTISKNKQLIIFGDVHQSIYEFLGANSTVV--------EALDHLHSNTITVHLNDNFRCS 284

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +I+    KV +    A  L   S   ++       +   V    + +   D+Q      
Sbjct: 285 PEIMKAARKVINKEHVAVELETISDIIVK-------EPSKVDPIIESIDNVDAQL----- 332

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                              R I   IS ++              +  DI +L R   +  
Sbjct: 333 -------------------RYIETEISKLV----------CSSAKLSDIAILTRSNAEID 363

Query: 388 LITFLTRFLKNDYKISVVGNDRFILT-DHLAIKDLMALGRFIL----------------- 429
            I    +    +  I              + I+ ++   R IL                 
Sbjct: 364 TIIDYFK----NSAIPFEKLTSQPEWMSDVRIQYIIDFMRTILLTSDDNNSNNNNYRPNE 419

Query: 430 ---SQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETE--------TVYEYIQKFANCG 477
              +      F  ++  S +       I ++       E        ++       A   
Sbjct: 420 RNCTPNWKSDFNTIVTLSGVKGIGYATIQQLYQSALSNEQPLWEYLKSLDAGDIPIAGHI 479

Query: 478 ISKFQHVIKYIHELIHIAQFCS---PHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
             + Q  +  + EL   +   S   P +   +++      +         +  + V+  L
Sbjct: 480 KQQIQRYVGLLRELHRSSFVSSCNEPIELLEMLVNIISDIEYQPLINISKKDLDIVMKHL 539

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA--------NHNEVRIMTVHTAK 581
            + L      + +  S    L   L  Y   +  AH          +   +++ T+H AK
Sbjct: 540 QDLLLALNEAKDSKPSDCSLLEWFLTHYIEQVTSAHHEKLLAGNKDDIGTIKLSTIHAAK 599

Query: 582 GLESPVVFLVDTGSQVFS 599
           GLE P+V + +     + 
Sbjct: 600 GLEFPIVLISNLSQNQYP 617


>gi|323439377|gb|EGA97100.1| hypothetical protein SAO11_1801 [Staphylococcus aureus O11]
          Length = 641

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 70/452 (15%), Positives = 149/452 (32%), Gaps = 86/452 (19%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           L F  + I    LLK+  +   +   +    +H+ +DE QDT+ IQ+ +++++       
Sbjct: 201 LTFSMISILVEYLLKENPL---LVKALQATYSHVFLDEFQDTTHIQYNLLKTIFLK---- 253

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                S   + AVGD KQ I  + GA        K              +   L  +FRS
Sbjct: 254 -----SNTVITAVGDNKQRIMGWAGALQNAFGIFKTDF---------NATQYTLLNNFRS 299

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
                   + V+     ++ L++ S   +        + G  ++W               
Sbjct: 300 AP------NLVYIQNIFSKTLNDASIEVLPAGEWNKNE-GVCEIWNF------------- 339

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                         + +I A  +A  IS  +         K   ++ +D  ++V++ +  
Sbjct: 340 -------------KNHNIEAILLASYISKWM---------KVENLKPRDFCIIVKQHEHI 377

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                + + L      S +  D   L     +  ++   +    ++    ++ ++     
Sbjct: 378 -YAAEIMKELSKINIKSRIEKDYQDLLSEELVLLIIRFLKLSYEEKSPELWLNVI----- 431

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
               D+I  +     ++E++   I +       +   ++  + +L       + +  F  
Sbjct: 432 ----DEIIDMKYSDADSESINYLIIE------KELVKMLDEVRKLYSNINDTNFNTQFAE 481

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           IL      Q+ +   G ++I       N      +     + +L                
Sbjct: 482 IL------QEIVVFLGEDIIKATYPKYNQANYFNEVMQKMIDKL-QYQNCISMRGLVQEF 534

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                + IMT+H +KGLE   VF +      F
Sbjct: 535 CGEYSIPIMTIHKSKGLEYHTVFFIGVEDDAF 566


>gi|296394545|ref|YP_003659429.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
 gi|296181692|gb|ADG98598.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985]
          Length = 473

 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/393 (13%), Positives = 106/393 (26%), Gaps = 79/393 (20%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
            +   +   L  L      ++      +      T    A                 L  
Sbjct: 63  RAAGELRARLDALDELAGGELGLAAVRA-----STFHAAAARQLGHFWPAESRPWQILDR 117

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
              L  +      +  +  + K    + +  K+     +   +    +    T +   +A
Sbjct: 118 KAPLISRAAAAAGLSDRGFDCKEAQGEIEWAKASLIGPEQYPQAARARRRAVTSSLEAIA 177

Query: 131 KYLNAHYEEAKKKN--CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
             +   YE  K       LDF+D+++    + K    +A    ++   +   L+DE QD 
Sbjct: 178 -DVYGRYEALKAAAAPRQLDFDDVLLAMIGVAKSSAAAA---NQLRSWLRCFLVDEFQDV 233

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q E++ +             +   +  VGD  Q+IYSF GA         R      
Sbjct: 234 TPLQHELLMTWLG----------ARDNVTVVGDPNQTIYSFAGARGAFFAEFARRFPH-- 281

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                  ++  L   +RSTA +  + +++     + +G   D                  
Sbjct: 282 ------AALFRLDRDYRSTAQVTDLANRLLGAAGDLRGQVPDGPAP-------------- 321

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
                                          +  +  A   A  I  +I           
Sbjct: 322 --------------------------RFVGHADEAREATATADEIVGLIRDG-------- 347

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             + A++I VL R            R       
Sbjct: 348 --VPAREIAVLFRANTHAARFERALRARGVPTG 378



 Score = 45.7 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 57/233 (24%), Gaps = 47/233 (20%)

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI------ 518
           +       F      +F H                  D    +LGA    +  +      
Sbjct: 263 SFAGARGAFFAEFARRFPHA-ALFRLDRDYRSTAQVTDLANRLLGAAGDLRGQVPDGPAP 321

Query: 519 -----SRFGNEVIDVLDEFLNFTLR-NEQNSYSSLQELISELEQYPPTIKRA-HSANHNE 571
                +    E     DE +            + L    +   ++   ++          
Sbjct: 322 RFVGHADEAREATATADEIVGLIRDGVPAREIAVLFRANTHAARFERALRARGVPTGEGG 381

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + ++H AKGLE   VFLV     V                                  
Sbjct: 382 VSLCSLHAAKGLEWEAVFLVGLVEGVLPLGWA---------------------------- 413

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                         E  RLLYVG+TRA  +L++  +           R    +
Sbjct: 414 -----SAAGADAVAEERRLLYVGITRARTRLVLSWYCERDGRAARPSRFLAPL 461


>gi|261820936|ref|YP_003259042.1| UvrD/REP helicase [Pectobacterium wasabiae WPP163]
 gi|261604949|gb|ACX87435.1| UvrD/REP helicase [Pectobacterium wasabiae WPP163]
          Length = 606

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 73/539 (13%), Positives = 146/539 (27%), Gaps = 147/539 (27%)

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           A +++ ++D++D+++    L+ + D   W+   +  +   + +DE QD  +    ++  L
Sbjct: 184 ALRQDGLIDYDDMVVFGQRLIVEHD---WVLPLVQAKFPVLAVDEYQDLGVALHRMVTRL 240

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
             +             LFAVGD  QSIY F GA    ++              +    + 
Sbjct: 241 VFE---------GGVRLFAVGDSDQSIYGFTGANGALLMEL---------AGSEGVETVR 282

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L L++RS A I++                         R  R          E V+    
Sbjct: 283 LQLNYRSGAGIVSAS----------------EMALGEARGYRANDPNRQTTIEFVLCPDG 326

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                                    +A +  + I+ +I        G+       DI +L
Sbjct: 327 -------------------------MADQATHAIAQIIPAALAAKPGR----TLGDIAIL 357

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R  +   ++         DY           +     ++D  A                
Sbjct: 358 YRDYRAGDIVADAVTAGGFDYIRVDNAAPYRKVALTSWVEDCAAWC---------AGGWR 408

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           + +  L    +  +                                  + +     +   
Sbjct: 409 VGRPQLRGLIDRYLAFH----------------------------RTRLDDAQARREGQR 440

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN----FTLRNEQNSYSS-LQELISEL 554
                  +   ++  + F++        ++D  L        + EQ +  S        L
Sbjct: 441 LTALLWALRADQQPARDFVTLL---RNGIVDSLLGTEPVLADQAEQLNRMSAALAEGGAL 497

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                        + + + ++T+H+AKG E  VV +V                       
Sbjct: 498 AALDIVSLGGRDGSPDHLNLLTLHSAKGCEYDVVIMVGLDLGNLP--------------- 542

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                 +        E  RL YVG+TRA D++ +         
Sbjct: 543 ---------------------WRGETPEKLRESRRLFYVGLTRARDEVHMLYSGFVDGR 580


>gi|238749724|ref|ZP_04611229.1| Helicase IV (75 kDa helicase) [Yersinia rohdei ATCC 43380]
 gi|238712379|gb|EEQ04592.1| Helicase IV (75 kDa helicase) [Yersinia rohdei ATCC 43380]
          Length = 684

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/278 (19%), Positives = 93/278 (33%), Gaps = 31/278 (11%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
           P+     SD     SL +        +K    +   +    E  + +    F   K   +
Sbjct: 291 PVISKLESDSQARRSLLINNWQQQCSEKKAQAKGWREWLTDELEWEVAEGAFWQDK---R 347

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
                    ++   L      SQ E I+  D        K     + L   L   ++ A 
Sbjct: 348 LAARLAGRLERWLGLMRMHGGSQAEMIEQADEEVRDLFQKR----IRLMAPLLKAWKAAL 403

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K+   +DF  LI    +LL K         +      HIL+DE QD S  +  ++ +L +
Sbjct: 404 KEEGAVDFSGLIHQAVNLLDK--------GRFVSPWKHILVDEFQDISPQRAMLLTALRK 455

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +    LFAVGD+ Q+IY F GAE        +   + A           L 
Sbjct: 456 --------QNKQTCLFAVGDDWQAIYRFSGAELSLTTAFNQHFGEGAE--------CALD 499

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            ++R  + I  + ++             +S +    +S
Sbjct: 500 TTYRFNSSIGDIANRFIQQNPYQLKKPLNSLSKGNKKS 537



 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 117/374 (31%), Gaps = 45/374 (12%)

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESS---ASILARRIAYTISNMIGTDTIFSNGK 367
           W+Q  S+  +Q    +E  T   +    E +      LA R+A  +   +G   +    +
Sbjct: 311 WQQQCSEKKAQAKGWREWLTDELEWEVAEGAFWQDKRLAARLAGRLERWLGLMRMHGGSQ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKDLMA 423
             +I+  D  V    +K   L+  L +     LK +  +   G     +      + +  
Sbjct: 371 AEMIEQADEEVRDLFQKRIRLMAPLLKAWKAALKEEGAVDFSGLIHQAVNLLDKGRFVSP 430

Query: 424 LGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
               ++ +  D+S    +          ++ LF   +D          E      + Q F
Sbjct: 431 WKHILVDEFQDISPQRAMLLTALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFNQHF 490

Query: 474 ANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                            I ++ +     +P+     +    KG ++ +    NE    L+
Sbjct: 491 GEGAECALDTTYRFNSSIGDIANRFIQQNPYQLKKPLNSLSKGNKKSVIILPNEQ---LE 547

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             L+      ++    L        +     K A       +  MT+H +KG ++  V +
Sbjct: 548 ALLDKLSGFVKDDEHILILARYHHLRPELLQKAATRWPKLHIDFMTIHASKGQQADYVII 607

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V                         G P    +S   + ++             E  RL
Sbjct: 608 VGLHEGN------------------DGFPAVARESILEDVLLPAPEDFPDA----EERRL 645

Query: 651 LYVGMTRASDQLII 664
           LYV MTRA  Q+ +
Sbjct: 646 LYVAMTRAKHQVWL 659


>gi|298528352|ref|ZP_07015756.1| ATP-dependent DNA helicase, RecQ family [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512004|gb|EFI35906.1| ATP-dependent DNA helicase, RecQ family [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1702

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 67/492 (13%), Positives = 146/492 (29%), Gaps = 132/492 (26%)

Query: 149  FEDLIINTNDLL-----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
            F+ ++    D L     ++   +   R ++   I HIL+DE QD + +++++I  L    
Sbjct: 1193 FQGILQEAVDYLDGTSTQEDGSALHWRDRLL-GIQHILVDEYQDINDLEYQLISLLAGRN 1251

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
               ++  S   ++ AVGD  Q+IYSF GA  + + R  +  Q           I+ +  +
Sbjct: 1252 ---EDEQSPRPSMLAVGDADQNIYSFQGANVRFIQRFAQEYQ---------AEIVHMVHN 1299

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            +RS   +    + +    ++          T    + R  +                   
Sbjct: 1300 YRSLPPVTLAANALIRHNQDRM-------NTPPVEAVRKDK------------------- 1333

Query: 324  PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
             +               +A   ARR+                     +  +DI +L R  
Sbjct: 1334 AEPVGMIMAGSREAMLKAALDQARRLMVQ----------------DGLSPEDICILCRTN 1377

Query: 384  KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            ++   +  L R    +  +    N    L     + ++M L                ++ 
Sbjct: 1378 QEVFALANLARHAGMELSLMRRRNISLPLVRE--VHEIMDLL---------------MRC 1420

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            P    +  +++ +        +     + +        +        +         ++F
Sbjct: 1421 PGSLCTGSEVYDLVMHLMVESS--ARSRLWLYHLEIMARDYRDECGSMRR-----PVYEF 1473

Query: 504  FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
               +  + +  ++  SR                                           
Sbjct: 1474 CEHVWDSSRDLRRMESR------------------------------------------- 1490

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDT-GSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                +   +R  T+H AKGLE P V L  T G +    +  +  ++  +   D  +    
Sbjct: 1491 ----SPGALRAGTMHGAKGLEFPAVILAGTPGDRESPEEERRLYYVGMTRARDRLVLCCG 1546

Query: 623  PQSKSRNNIVSD 634
            P       I++ 
Sbjct: 1547 PDHPFAPEILAA 1558



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 64/216 (29%), Gaps = 55/216 (25%)

Query: 452  DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLILGA 510
             +  +        ++    +  +   + +   ++  +          S  +D    ++  
Sbjct: 1382 ALANLARHAGMELSLM-RRRNISLPLVREVHEIMDLLMRCPGSLCTGSEVYDLVMHLMVE 1440

Query: 511  KKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
               R +  +        D  DE          +    + E    +      ++R  S + 
Sbjct: 1441 SSARSRLWLYHLEIMARDYRDE--------CGSMRRPVYEFCEHVWDSSRDLRRMESRSP 1492

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
              +R  T+H AKGLE P V L  T                                    
Sbjct: 1493 GALRAGTMHGAKGLEFPAVILAGTPG---------------------------------- 1518

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                       + + EE  RL YVGMTRA D+L++C
Sbjct: 1519 ----------DRESPEEERRLYYVGMTRARDRLVLC 1544


>gi|116050720|ref|YP_790459.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585941|gb|ABJ11956.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1707

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 85/249 (34%), Gaps = 28/249 (11%)

Query: 153  IINTNDLL---KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            + +  +LL   +  +    +R ++ +   +IL+DE QD   +Q+ ++ +L          
Sbjct: 1206 LSDAVELLEGKRNIEGEDDLREQLLRGYRYILVDEYQDIDDLQYRLVSALAGR----HAE 1261

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  + AVGD+ Q+IY++     + + R +   +          S   L  ++RS+  
Sbjct: 1262 EDGRLCIMAVGDDDQNIYAWRDTNNRYIERFREDYE---------ASTSFLVDNYRSSLR 1312

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            I+   +++                 IR   +R        LWE+   Q   Q        
Sbjct: 1313 IIEAANQLIGQNLAR----LKEANPIRIDRARQELP-AGGLWEERDEQRKGQVMRLLID- 1366

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                         ++ A+     +  ++  +    NG   + +    L  ++   +   I
Sbjct: 1367 ------PSDREQGNLQAQAAMVELGRLLALEQGSWNGCAVLARTHRYLWPIQAWCEQHDI 1420

Query: 390  TFLTRFLKN 398
             +     K 
Sbjct: 1421 PYFLAADKE 1429



 Score = 41.4 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 91/322 (28%), Gaps = 56/322 (17%)

Query: 421  LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
            ++ LGR +  ++   +   +L                         +    K     I++
Sbjct: 1381 MVELGRLLALEQGSWNGCAVLARTHRYLWPIQ----AWCEQHDIPYFLAADKETALPITR 1436

Query: 481  FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
             +  +  I  +  I       D +  + G+ +  +     F     + +   L       
Sbjct: 1437 QRSFVAAIDYMREIKGALCAADAWQRLSGSNQLVEAEWKSFFQTAFEQMRGELGDCQLGS 1496

Query: 541  QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                  L +   EL Q             + + + TVH+AKGLE   V L+D G      
Sbjct: 1497 GALIDWLYDYARELRQQS----------KDGLYLGTVHSAKGLEFRHVVLLDGGWST--- 1543

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                   +  T  +  RL YVG+TRA  
Sbjct: 1544 ---------------------------------------QVDTLADERRLYYVGVTRAEQ 1564

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L +C+ ++ +   +S  R      +          + +       D   A   S H   
Sbjct: 1565 TLTLCEFADGNPFSRSLMRDVQQHEFQGQPLPGLEVRFQQLTLKEIDIGFAGRQSPHAQI 1624

Query: 721  NTPLEREETIKQLMDEQKIPKK 742
            +  +E       L  +++  + 
Sbjct: 1625 HKAIEALREGDPLTLKEEAGRY 1646


>gi|229817515|ref|ZP_04447797.1| hypothetical protein BIFANG_02778 [Bifidobacterium angulatum DSM
           20098]
 gi|229785304|gb|EEP21418.1| hypothetical protein BIFANG_02778 [Bifidobacterium angulatum DSM
           20098]
          Length = 716

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 22/200 (11%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +R    K        L L + L   Y E  + N  +DF  +I++    +K        
Sbjct: 343 ALNRRYGGKHTGRNAEMLDLIEPLYRAYAECFRANNGIDFPGMIVDAIQCVKT------- 395

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             K   E  ++LIDE QD S  ++ +IR+L               +LF VGD+ QSIY F
Sbjct: 396 -GKYRHEYRYVLIDEYQDMSRPRYALIRAL---------REQRDFSLFCVGDDWQSIYRF 445

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            G++   +L   ++ ++       +  + ++  + R    ++           +      
Sbjct: 446 AGSDIGLILDFDKLWEQ-----WGETRMFQITTTRRFRTSLIEASGDFVMADPSLYVKHL 500

Query: 290 DSTTTIRHRSSRIGQVGTVQ 309
            ST   +  S +     T +
Sbjct: 501 HSTNEKKDYSLKALGGKTPE 520



 Score = 40.7 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 53/446 (11%), Positives = 113/446 (25%), Gaps = 72/446 (16%)

Query: 255 FSIIELPLSFRST---ADILT--VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           F  + L +   ST     I+   V +K      +    +      +  +           
Sbjct: 237 FHSLGLEICRSSTIANRPIIDENVANKAIKAAFDQLLTTSIPYRLLAFKLMPKHLGEKYA 296

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI----AYTISNMIGTDTIFSN 365
              ++ +      +     +  +     +     + +  I       ++   G      N
Sbjct: 297 AAARLENFRLPVKDYDFSQYAQHLVDTAKTIIQQMRSNNINVDGMRALNRRYGGKHTGRN 356

Query: 366 GKKRVI---QAKDILVLVRKRKDTPLITFLTRFL------KNDYKISVVGNDRFILTDHL 416
            +   +     +      R          +   +      K  ++   V  D +      
Sbjct: 357 AEMLDLIEPLYRAYAECFRANNGIDFPGMIVDAIQCVKTGKYRHEYRYVLIDEYQDMSRP 416

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----ETETVYEYIQK 472
                 AL R +  Q D   F               I++          + + ++E   +
Sbjct: 417 R----YALIRALREQRDFSLFC-------VGDDWQSIYRFAGSDIGLILDFDKLWEQWGE 465

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG----NEVIDV 528
                I+  +     + E         P  +   +    + +   +   G     E   V
Sbjct: 466 TRMFQITTTRRFRTSLIEASGDFVMADPSLYVKHLHSTNEKKDYSLKALGGKTPEERFTV 525

Query: 529 LDEFLN--------FTLRNEQNSYSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVHT 579
           + E L           L   ++  + +     E L +               +  MT H 
Sbjct: 526 IVEQLRKLPKKASVLLLGRYRSDLNLITGQDREGLFRCDGNSITFLEKPEMTIEFMTAHK 585

Query: 580 AKGLESPVVFLVDTGSQV--FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           +KGL+   VFL+     +  F     ++  +   L +    P                  
Sbjct: 586 SKGLQRDFVFLLCCSGGLKGFPSTIPEEPLLGLLLPEVERYPH----------------- 628

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLI 663
                   E  RL YV MTR   ++ 
Sbjct: 629 -------AEERRLFYVAMTRCKKKIF 647


>gi|167718947|ref|ZP_02402183.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           DM98]
          Length = 161

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 23/166 (13%)

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           A   + K+   V+ F+DL+ N    L       W+R  +       LIDE QDT  +Q+ 
Sbjct: 18  AELAQRKRTRRVVSFDDLLANLYRALDAHP---WLRETLRARYPAALIDEFQDTDPLQFA 74

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +  ++                LF VGD KQ+IYSF  A+                   + 
Sbjct: 75  IFDTIFA----------PAGPLFLVGDPKQAIYSFRAAD----------LHTYLAARARA 114

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +   L ++ RST  I+   ++VF     A  L       +R  S 
Sbjct: 115 SARYTLAVNQRSTPAIVDACNRVFGANPRAFVLDGLDYEPVRAGSR 160


>gi|269102296|ref|ZP_06154993.1| DNA helicase IV [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162194|gb|EEZ40690.1| DNA helicase IV [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 701

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 71/205 (34%), Gaps = 19/205 (9%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLII 154
           +L  +   ++++ +      +   M     + L L       Y++  K    +DF  +I 
Sbjct: 365 ELLGQRGATKEQLLNDIQDSSNPAMRPRMKSELELLWPCYEAYQQHLKVKKQIDFNSMIK 424

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
                +K+         K       +++DE QD S ++  +I +L +             
Sbjct: 425 VATQYVKE--------GKFISPWRFVMVDEYQDISPLRLSLIEALCQPQPNSDKA---AP 473

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           TLFAVGD+ Q+IY F G++       +               I +L  ++R    I  V 
Sbjct: 474 TLFAVGDDWQAIYRFAGSDVNLTTDFEERFGA--------THITQLSTTYRFNNMIGDVA 525

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRS 299
           +               S    + ++
Sbjct: 526 NVFVQQNPMQVKKELTSFKKQKKKA 550



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 109/363 (30%), Gaps = 48/363 (13%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
           +    S  +S+ Q++        I   I  +             +  + +  +  R + +
Sbjct: 337 RIPGFSKENSMEQQAENEQTINWIWRHIELLGQRGATKEQLLNDIQDSSNPAMRPRMKSE 396

Query: 386 ----TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM- 440
                P      + LK   +I      +         K +      ++ +  D+S + + 
Sbjct: 397 LELLWPCYEAYQQHLKVKKQIDFNSMIKVATQYVKEGKFISPWRFVMVDEYQDISPLRLS 456

Query: 441 ----LKSP----------LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---H 483
               L  P          LF   +D          +     ++ ++F    I++      
Sbjct: 457 LIEALCQPQPNSDKAAPTLFAVGDDWQAIYRFAGSDVNLTTDFEERFGATHITQLSTTYR 516

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
               I ++ ++    +P      +   KK +++ ++    +   +L E      R E   
Sbjct: 517 FNNMIGDVANVFVQQNPMQVKKELTSFKKQKKKAVTLLAQDF--ILQELGQLAKRYEGKQ 574

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + L    +  ++               ++ MT H +KG E+  VF+VD    +F     
Sbjct: 575 TNVLILGRNNKQRPAKLEAWQEQWPQLNLQYMTCHASKGQEAQYVFIVDVNKGIFPTLDR 634

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                      + S L    +     E  RL YV +TRA   + 
Sbjct: 635 ------------------------ETGLASILQSRAETYADAEERRLFYVALTRAKKHVY 670

Query: 664 ICK 666
           +C 
Sbjct: 671 VCA 673


>gi|328541560|ref|YP_004301670.1| UvrD-like helicase IV [Polymorphum gilvum SL003B-26A1]
 gi|326415760|gb|ADZ72822.1| UvrD-like helicase IV [Polymorphum gilvum SL003B-26A1]
          Length = 913

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 24/202 (11%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           ++ S      + +R               +   +   Y    +K   +DF+ +I N   L
Sbjct: 525 IRASHLTLDMLLERAKALHDRTRAKEFAQVVWKITETYSRKLEKANRIDFDSMIANATRL 584

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           ++          +     + IL+DE QD S  +  +I++L            +   +FAV
Sbjct: 585 VE--------AGQYQSPYSLILVDEFQDISEPRANLIKAL--------KHQKAFTKIFAV 628

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD+ QSIY F G++     + +                  L  ++R    I         
Sbjct: 629 GDDWQSIYRFAGSDITIFTQFEANFGASWQG--------RLEQTYRCNQLIAETAASFVQ 680

Query: 280 IPENAQGLSEDSTTTIRHRSSR 301
                   S  ST     RS R
Sbjct: 681 RNAAQLKKSVRSTRPAIARSIR 702



 Score = 38.7 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 22/102 (21%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V  ++ H AKGLE+    L+D                             +P     + +
Sbjct: 771 VSGLSFHRAKGLEADYTILLDVSEGD----------------------YGVPSRIEDDEL 808

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            + ++   +     E  RL YV +TRAS  + +  +S   + 
Sbjct: 809 FNLVMPRPETFEFAEERRLFYVALTRASRGVFLLTNSREPSR 850


>gi|160881548|ref|YP_001560516.1| ATP-dependent nuclease subunit B [Clostridium phytofermentans ISDg]
 gi|160430214|gb|ABX43777.1| ATP-dependent nuclease subunit B [Clostridium phytofermentans ISDg]
          Length = 1171

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 190/687 (27%), Gaps = 135/687 (19%)

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              AR     I+ ++  +           + KDI ++        +   + +       I 
Sbjct: 346  AEARHAVIEITRLLREEE---------YRYKDIAIV---SGAMEVYGDIVKRELELAGIP 393

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI---------- 453
               + +  +  +  ++ L +    +    D  +    LK  L +F+ D+I          
Sbjct: 394  CFVDHKKNILTNPVVEFLRSALDVVTHNFDYEAIFRFLKCGLTDFTMDEIDLFENYVIAF 453

Query: 454  -------FKICTQRHETETVYEYIQKFANCGISKFQHV--------------IKYIHELI 492
                   ++   +R         ++K         +                 + ++ L 
Sbjct: 454  GIRGKYRYEHEWERKYKTNYEVDLEKINYVRECILKEFTPLYETLTSKKSSVRECVNALY 513

Query: 493  HIAQFCSPHD----FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            ++       +    F        +   +  ++   ++  ++ E  +  +         L+
Sbjct: 514  NLLCTYHIEEKIHIFVEKFKAQGEKEDKLRAKEYEQIYRMVLEIFDRMVELLGEDVLPLK 573

Query: 549  ELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            E    L+      K        +++ +  +   +  +   +F +     +    +     
Sbjct: 574  EFRDILDTGFREAKVGLIPPSIDQILVGDIERTRLKDIKALFFLGVNDGIVPKANP---- 629

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                     GI     +    ++ +       + +   E+   LY+ +T+  ++L +   
Sbjct: 630  -------GGGILSDAERQLFADHEIELSPTKRQTAYLTEFY--LYLNLTKPQNKLYLYYS 680

Query: 668  SNTSNEKKSNQRT----------------------WYDMVYDSFHNDERVKKIKLTNSIN 705
                + K                              +++         +  ++      
Sbjct: 681  KLDVSGKSIRASYLLGKISKIFPKLKIYDADRKSREDELLGTDQGLSYLISVLRDYEGEQ 740

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-NPSTIDT 764
               W          +       + + Q +  Q   + L   +   +    +L + + ++ 
Sbjct: 741  PKLWREVYHLYVSGQIKGRISLDKVLQGVFYQNYEQGLTKEVARKLYGETLLGSVTRMEK 800

Query: 765  KGKTNLESLLSDNQTFN-----------RGLIIHKLLQV-----------IFTLPEHKRK 802
                     L    +              G + H+ L+               LPE  R 
Sbjct: 801  YAACAFAHFLQYGLSLEERQEYKISMPDIGSLFHEALERFSKALKELDISWHELPEDVRI 860

Query: 803  NFITSYCTKNAKLWP-------------AKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
            +       +  + +              A   + +L   T+ L + +        SY E 
Sbjct: 861  SLGERCVREAVENFGNGILESSKRSAYLATRVERILQRTTKTLTHQLQQGVFEPGSY-EQ 919

Query: 850  SVSGKINCPKKDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLS 905
              S           + GRID++        ++  + +YK+      ++ ++ Y    QL 
Sbjct: 920  YFSHADRYLN----LRGRIDRVDLYEQDGKLYVKVIDYKSGSTSF-DLMNLYYGLQLQLG 974

Query: 906  IY----EKILKDSYPNKSLV--CLLIY 926
            +Y     +++K+ YPN  +    +  Y
Sbjct: 975  VYLSAAMELMKEQYPNHEIHPAGVFYY 1001


>gi|26990390|ref|NP_745815.1| helicase, putative [Pseudomonas putida KT2440]
 gi|24985353|gb|AAN69279.1|AE016563_2 helicase, putative [Pseudomonas putida KT2440]
          Length = 552

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 88/540 (16%), Positives = 173/540 (32%), Gaps = 141/540 (26%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           + F+ L+     ++++ +V+   R  I +   H+ +DE QD +  Q+E+I+ L       
Sbjct: 133 ITFKQLLPLAIKIIQRSEVA---RNAIRKTYAHVFLDEFQDCTADQYELIKLLFL----- 184

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                +   L AVGD KQ I  + GA                         + L  +FRS
Sbjct: 185 ----GTGIHLTAVGDRKQMIMGWAGALEGIFKTYATDF---------DALPLHLYANFRS 231

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
            +++L V +++                               ++    V+  +     + 
Sbjct: 232 KSNLLRVQNEIIR-----------------------------EIDPSAVTPAELISGDEG 262

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           E    +F        +S  A  +A +I + I             +  ++I VL+ +    
Sbjct: 263 EVLAVHF------QHSSQEATVLADSIFHWIEAG----------VPPREIAVLMPR--QV 304

Query: 387 PLITFLTRFLKNDYKISVV-GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM--LKS 443
                       +  I+    +D   L    A + ++     +  +    ++  +  L +
Sbjct: 305 DDYGSALMAELGNRGIASRNDSDLQDLLKEPAARLVIDYLTCLYGKGQSDAWARLMDLFT 364

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
           P    S D + ++      T   +    K A+   S ++   K     I    +      
Sbjct: 365 PYEEASRDHLHRLF---ETTYRAHVRQVKVASKTPSPYEDWWKLTSSFIRDVGYP----- 416

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              IL A  G  +   R    V +V D  +   L +E+    +L  L             
Sbjct: 417 ---ILTALSGDYESKLRLHEVVREVRDR-VGALLSSEKTIPGALARL------------- 459

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
              ++   VR +T+H +KGLE   V ++   +Q F  K                      
Sbjct: 460 ---SDDQAVRFLTIHKSKGLEFHTVIILGVETQAFWGK---------------------- 494

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                                 E   + +VG++RA ++L+I         K + + T + 
Sbjct: 495 --------------------LAEERCVYFVGVSRAKERLLITTAEYRPKPKNAGRWTEHR 534


>gi|222529588|ref|YP_002573470.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|312127363|ref|YP_003992237.1| uvrd/rep helicase [Caldicellulosiruptor hydrothermalis 108]
 gi|222456435|gb|ACM60697.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725]
 gi|311777382|gb|ADQ06868.1| UvrD/REP helicase [Caldicellulosiruptor hydrothermalis 108]
          Length = 641

 Score =  101 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 63/454 (13%), Positives = 146/454 (32%), Gaps = 84/454 (18%)

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            L F  +      +L++     ++   +    +H+ +DE QD + +Q++++++       
Sbjct: 206 ALTFPMISRLAEYILRENP---FVLKALRATYSHVFLDEFQDITGVQYDLLKTCFL---- 258

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                 S   + AVGD KQ I  + GA        ++               I L ++ R
Sbjct: 259 -----GSNAVITAVGDNKQRIMEWAGALRNSFELFEKDF---------NAQRINLLMNHR 304

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           S   ++ +        E      + S   I +        G  ++W       +      
Sbjct: 305 SAPRLVELQKVFIK--EAFGEKIDLSDLKIENSKKWSKDDGICEVWIFNDYIKE------ 356

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                               A+ ++  I   + ++          +  +DI VLV++R  
Sbjct: 357 --------------------AQILSENIKKWLNSE---------DLSHRDICVLVKQRP- 386

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
           +     L + L  +   +    +   L +   I+ ++ L    L+   + S+  +     
Sbjct: 387 SKYTNMLIKTLAENSMNARDEGEVSDLLNEEIIQFIINLFSLALNINGNNSYTFVYDFIK 446

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
                DD           +T   ++ K  +      +   + + ++ +  Q    +    
Sbjct: 447 ILNGYDD-----------DTPERFLIKLESEITELLRFANEKLLKIDNQKQIVELYKIII 495

Query: 506 LILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             L   +    F   R      D++++ +       + + +  + + + +          
Sbjct: 496 RYLKMDRLISYFPQYRNTAWFNDLMNKSIKLLWNEFEITNNWSKAITNFI---------- 545

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                N + IMT+H +KGLE   V  +      F
Sbjct: 546 ---GINSIPIMTIHKSKGLEYDTVVFIGLEDSAF 576


>gi|270289295|ref|ZP_06195597.1| UvrD/REP helicase family protein [Chlamydia muridarum Weiss]
          Length = 670

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 80/238 (33%), Gaps = 30/238 (12%)

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
             I    + L + +     E++   L +  L     P+K++  + + K        +K +
Sbjct: 382 ENIWDTLRKLLERAGIPIQEKKEEDLYNALL-----PKKSVQEKALIKLIVRFISLMKSN 436

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                K+       K   S+     + K +   Y +   K   +DF D I+   ++ +  
Sbjct: 437 HKSIKKVLYCAKIAKDIPSSWLIEKVFKPVYERYVDTLAKRGQIDFTDAILQATEICRHS 496

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                       + ++I++DE QD S+            F       + P  ++ VGD+ 
Sbjct: 497 S---------SGKYDYIIVDEFQDISID--------CCRFLQELRKGNPPAKMYCVGDDW 539

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           QSIY F G+      +                 I  L  ++R    ++++        
Sbjct: 540 QSIYRFAGSNITVFNQFSDYF--------GPQEIHRLETTYRLGEPLVSLSSSFVQRN 589


>gi|270285279|ref|ZP_06194673.1| UvrD/REP helicase family protein [Chlamydia muridarum Nigg]
 gi|301336675|ref|ZP_07224877.1| UvrD/REP helicase family protein [Chlamydia muridarum MopnTet14]
          Length = 852

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 80/238 (33%), Gaps = 30/238 (12%)

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
             I    + L + +     E++   L +  L     P+K++  + + K        +K +
Sbjct: 382 ENIWDTLRKLLERAGIPIQEKKEEDLYNALL-----PKKSVQEKALIKLIVRFISLMKSN 436

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                K+       K   S+     + K +   Y +   K   +DF D I+   ++ +  
Sbjct: 437 HKSIKKVLYCAKIAKDIPSSWLIEKVFKPVYERYVDTLAKRGQIDFTDAILQATEICRHS 496

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                       + ++I++DE QD S+            F       + P  ++ VGD+ 
Sbjct: 497 S---------SGKYDYIIVDEFQDISID--------CCRFLQELRKGNPPAKMYCVGDDW 539

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           QSIY F G+      +                 I  L  ++R    ++++        
Sbjct: 540 QSIYRFAGSNITVFNQFSDYF--------GPQEIHRLETTYRLGEPLVSLSSSFVQRN 589


>gi|15835108|ref|NP_296867.1| UvrD/REP helicase family protein [Chlamydia muridarum Nigg]
 gi|8163234|gb|AAF73563.1| UvrD/REP helicase family protein [Chlamydia muridarum Nigg]
          Length = 890

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 80/238 (33%), Gaps = 30/238 (12%)

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
             I    + L + +     E++   L +  L     P+K++  + + K        +K +
Sbjct: 420 ENIWDTLRKLLERAGIPIQEKKEEDLYNALL-----PKKSVQEKALIKLIVRFISLMKSN 474

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                K+       K   S+     + K +   Y +   K   +DF D I+   ++ +  
Sbjct: 475 HKSIKKVLYCAKIAKDIPSSWLIEKVFKPVYERYVDTLAKRGQIDFTDAILQATEICRHS 534

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                       + ++I++DE QD S+            F       + P  ++ VGD+ 
Sbjct: 535 S---------SGKYDYIIVDEFQDISID--------CCRFLQELRKGNPPAKMYCVGDDW 577

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
           QSIY F G+      +                 I  L  ++R    ++++        
Sbjct: 578 QSIYRFAGSNITVFNQFSDYF--------GPQEIHRLETTYRLGEPLVSLSSSFVQRN 627


>gi|116515208|ref|YP_802837.1| hypothetical protein BCc_282 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116257062|gb|ABJ90744.1| exodeoxyribonuclease V, b chain [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 1167

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 86/531 (16%), Positives = 184/531 (34%), Gaps = 81/531 (15%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++    +IDE QD    Q+ +                  ++L  +GD KQSIYSF  +  
Sbjct: 366 KKYTISMIDECQDIDNYQFNIFYK--------IYKKKKKKSLILIGDPKQSIYSFRNSNI 417

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
              L+ K+  QK             L  +FRS+ ++   ++ +FS  +N     + +   
Sbjct: 418 FLYLKYKKKIQKCF----------FLKKNFRSSINMTKSINTLFSKTKNPFIFKKINFQP 467

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                         +   +     ++   P  +       ++ +    + +++  AY+I+
Sbjct: 468 SL----------ANKKNNKNKLVINNITQPALKFIFKNKKTINKNEYFTWISKMCAYSIN 517

Query: 355 NMIGTD------TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS-VVGN 407
           N++          IF N KKR I+  DI +LV+ + +      + +     Y I  +  +
Sbjct: 518 NLLSNKSTKKSFIIFKNKKKRSIKNTDIAILVKNKYEAN----IIKKEFKKYGIKTIYTS 573

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
           ++  +      K+++ +   +    + L    +L + +F+ +  DI+ I  ++    ++ 
Sbjct: 574 EKKNIFQTKEAKEILFIIESLSDLSNILKLQKLLMTKIFSKNIYDIYSINNKKKTYSSL- 632

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
                            IK + +   I +  +    F  I+     +++ I    N +  
Sbjct: 633 -----------------IKKLKKYYLIWKKKNIFFMFKKIIFDFCFQKKNIKLKINNINI 675

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-----------VRIMT 576
                L   L  +  S  +   L   L +         + + N            ++I+T
Sbjct: 676 YNIIQLCEILEEKNKSIKNKFLLTIWLRKKILKKNIEKNKSKNLIQNKNINDKKFIKIIT 735

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           ++ +KGLE P++++    S       I                    +           I
Sbjct: 736 IYKSKGLEYPIIWIPFFSSFQKKKNQI-------------IYCKKTLKKIVNLKNEKKNI 782

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
             L+K    E  RLLYV +TR+     I      + + +       + +  
Sbjct: 783 ISLEKERLSEDIRLLYVAITRSIIHCCIGLAVIKNKKNEKYTNFHKNCLGY 833



 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 9/59 (15%)

Query: 863  IISGRIDQISISQQNIFIFEYKTHHHVPQE---------IEHIPYTHIAQLSIYEKILK 912
            I++G ID I + ++  +I EYK++   P            E I Y +  Q  IY  +L 
Sbjct: 1054 ILNGSIDLIFLWKKKYYIIEYKSNWLGPDSSYYNSKNIKKEIIKYRYDIQYQIYSLVLH 1112


>gi|43295|emb|CAA25043.1| unnamed protein product [Escherichia coli K-12]
          Length = 258

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+ 
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNN 227

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           IQ+  IR L  D             +  VGD+ QSIY + G
Sbjct: 228 IQYAWIRLLAGD----------TGKVMIVGDDDQSIYGWRG 258


>gi|221064759|ref|ZP_03540864.1| putative DNA helicase II [Comamonas testosteroni KF-1]
 gi|220709782|gb|EED65150.1| putative DNA helicase II [Comamonas testosteroni KF-1]
          Length = 497

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 78/544 (14%), Positives = 149/544 (27%), Gaps = 137/544 (25%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                  YE A +   ++D++D+++    L+ + D   W+   +  +   + +DE QD  
Sbjct: 67  LAAWAETYEAALRDEGLIDYDDMVVFGQRLIAEHD---WVLPLVQAKFPVLAVDEYQDLG 123

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           +    +++ L  D             LFAVGD  QSIY F GA+   ++           
Sbjct: 124 VALHRIVKRLAFD---------GGVRLFAVGDADQSIYGFTGADGALLMELAAR------ 168

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
              +    ++L L++RS A I+T  +         Q       TTI       G      
Sbjct: 169 ---RDIEPVQLQLNYRSGAGIVTASEMALGEARGYQASDPARQTTIEFVLRPGG------ 219

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                          +A   A  +A  I   + +          
Sbjct: 220 -------------------------------TADQAAHAVAQIIPAALASKPGR------ 242

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                DI +L +  +   ++         DY           +     ++D  A      
Sbjct: 243 --TLGDIAILYKDYRAGDIVAKAVATGGLDYIRVDTAAPYRKVALTSWVEDCAAWC---- 296

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                     + +  L       + +       +    +  ++         Q +   + 
Sbjct: 297 -----AGGWRVGRPQLRGL----LDRYRAFHRASLDDSQAKREE--------QELTALLW 339

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           EL   A      +F   +                +  + LD            +   +  
Sbjct: 340 ELR--ADQQPAREFVASLRNGVVDHLLAAELALADQKEQLDRMTAALAEGGALASLDITS 397

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L                 + + + ++T+H+AKG E  VV +V         ++       
Sbjct: 398 LGGR------------DGSPDHLNLLTLHSAKGCEYDVVIMVGLDLGNLPWRN------- 438

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                               E  RL YVG+TRA D++ +     
Sbjct: 439 -----------------------------ETPEKLRESRRLFYVGLTRARDEVHMLYSGF 469

Query: 670 TSNE 673
               
Sbjct: 470 VDGR 473


>gi|329737717|gb|EGG73960.1| hypothetical protein SEVCU028_0942 [Staphylococcus epidermidis
           VCU028]
          Length = 168

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 62/170 (36%), Gaps = 20/170 (11%)

Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTK--NAKLWPAKEYKNL-LLSITRLLENPMMTTA-M 841
           +H ++Q +    +   K+ +  Y  +  + +L      +++ +  I   ++ P+      
Sbjct: 1   MHTVMQHLPFREQRLTKDELFQYIDRLIDKQLIDEDAKEDIRIDEIMHFIDGPLYMEIAQ 60

Query: 842 SCDSYSEVSVSGK------INCPKKDI-IISGRIDQISISQQNIFIFEYKTH----HHVP 890
           + + Y+E+           +    +D+ II G ID I  S    +  +YKT         
Sbjct: 61  ADNVYTELPFVVNQIKVDGLTSEDEDVSIIQGMIDLIYESDGQFYFVDYKTDAFNRRKGM 120

Query: 891 QEIE---HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
            + E    +   +  Q++ Y   L+     + +   L +     +  I  
Sbjct: 121 SDEEIGNQLKEKYQIQMTYYRNTLETIL-KRPVKGYLYFFKFGTL-EIDD 168


>gi|307292810|ref|ZP_07572656.1| double-strand break repair protein AddB [Sphingobium
           chlorophenolicum L-1]
 gi|306880876|gb|EFN12092.1| double-strand break repair protein AddB [Sphingobium
           chlorophenolicum L-1]
          Length = 991

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 97/918 (10%), Positives = 234/918 (25%), Gaps = 97/918 (10%)

Query: 9   LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTL---QQASQTQCIEER 65
            N        D +         + + V+L        +      L   +          R
Sbjct: 45  PNNRAIRSVSDAFVRKSGGGLLLPRLVALGDPDLGEQVGGALDPLGEDEAVPPAIAPMRR 104

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
             +L+         P       ++ +    + ++++  +     + D   + ++ +    
Sbjct: 105 QMILARMVQQASAHPVDAGQALKLAQALGAVLDQIQVERVSVAALADLTLSDELSQHWQT 164

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFED-----LIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           SL L   L A + +   +   +D  D     L        K       I   +       
Sbjct: 165 SLRLFGILLAQWPQELARLGYIDLADRRNRLLDRVAARWAKAPPEGFVIAAGMSA----- 219

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF-----HGAEPK 235
                  T+     ++R +              + +   GD  ++I  F      G  P 
Sbjct: 220 -------TAPAIAGLLRRIALLPKGAVVFAGLDQEM--DGDAWEAIGPFDADPLTGRAPA 270

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                 +   KR  +             + S  D       V     +   L    T+  
Sbjct: 271 GHETHPQYALKRLLDRMSATRDDVALWRWGSEHD----ARAVRGRNISNAMLPPRLTSRW 326

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI-S 354
           R   +    +  V+  E      ++Q      +     ++  + ++     R++A  + +
Sbjct: 327 RDLKTADRSLAGVEALEVATPGEEAQAIA--IALREAVETPGRTAALVTPDRQLATRVSA 384

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           ++        +   + +       L+    +     F    L    K  +V      L  
Sbjct: 385 HLRRWGIDADDSAGQPLSRLPPGTLLIAMAEALAERFAPVALLTLLKHPLVMRGEERLGW 444

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
              ++ L  L R                 P       D+     +  + + V     +  
Sbjct: 445 LEGVRGLDLLLRG--------------PRPQAGIVGLDLLLAEREGEDRQRVLRARTRLW 490

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                     ++     +      +         G       +    G+   D+  E   
Sbjct: 491 WAEARALLEPLE--QAFLAAPDLAAQLAAIREHAGRLSHDAVWAGHQGHAAADLFAEMEE 548

Query: 535 FTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                  Q    +L  L   L        R     H  + I+ +  A+ +++ ++ L   
Sbjct: 549 AASEGPRQADIRALPALFDHL--LGGVSVRPPQGGHPRIAILGLIEARLVQTDLMILGGL 606

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               +         + P +  + G+P    +     +  +  +   +            +
Sbjct: 607 NEGTWPGLPAPDPWLAPRIRREIGLPGLESRIGLAAHDFASALGAPQ------------I 654

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +TRA                     + + +   +    +     +        +  A  
Sbjct: 655 LITRARR-----------GSGGPAVASRFWLRLKAMAGPQWKSADRHAALAQAIDHAAEH 703

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                P   P+       +++    + +    P          L            L+ +
Sbjct: 704 RPASRP--APVPPLSVRPKVIPVTDVDRLKADPYAFYAKRILRLA----------RLDPV 751

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL----SIT 829
            +D     RG  +H++LQ           +          +       K L         
Sbjct: 752 DADAGPAWRGTAVHEILQQWAEAGSSDLTDLEARARAMFDRPDVHPLLKALWQPRLIEAI 811

Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHH 888
           R +   + +   +      V + G+       + ++G+ D+I +     + I +YKT   
Sbjct: 812 RWIAAEVASDLAAGRKILSVEIEGR--ADIAGVTLTGKADRIDLLPDGKLGIVDYKTGKP 869

Query: 889 VPQEIEHIPYTHIAQLSI 906
                  +   +  QL +
Sbjct: 870 PSAR--QVKAGYALQLGL 885


>gi|134095190|ref|YP_001100265.1| putative DNA helicase II [Herminiimonas arsenicoxydans]
 gi|133739093|emb|CAL62142.1| putative DNA helicase II [Herminiimonas arsenicoxydans]
          Length = 588

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 74/533 (13%), Positives = 145/533 (27%), Gaps = 137/533 (25%)

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +   ++D++D+++    L+ + D   W+   +  +   + +DE QD  +    +++ L 
Sbjct: 169 LRDEGLIDYDDMVVFGQRLIAEHD---WVLPLVQAKFPVLAVDEYQDLGVALHRIVKRLA 225

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            D             LFAVGD  QSIY F GA+   ++              +    ++L
Sbjct: 226 FD---------GGVRLFAVGDADQSIYGFTGADGALLMELAAR---------RDIEPVQL 267

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            L++RS A I+T  +         Q       TTI       G                 
Sbjct: 268 QLNYRSGAGIVTASEMALGEARGYQASDPARQTTIEFVLRPGGM---------------- 311

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                                A   A  +A  I   + +               DI +L 
Sbjct: 312 ---------------------ADQAAHAVAQIIPAALASKPGR--------TLGDIAILY 342

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           +  +   ++         D+           +     ++D  A                +
Sbjct: 343 KDYRAGDIVAEAVATGGLDHIRVDTAAPYRKVALTSWVEDCAAWC---------AGGWRV 393

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            +  L       + +       +    +  ++         Q +   + EL   A     
Sbjct: 394 GRPQLRGL----LDRYRAFHRASLDDSQAKREE--------QELTALLWELR--ADQQPA 439

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            +F   +                +  + LD            +   +  L          
Sbjct: 440 REFVASLRNGVVDHLLAAELALADQKEQLDRMTAALAEGGALASLDITSLGGR------- 492

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  + + + ++T+H+AKG E  VV +V         ++                  
Sbjct: 493 -----DGSPDHLNLLTLHSAKGCEYDVVIMVGLDLGNLPWRN------------------ 529

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                    E  RL YVG+TRA D++ +         
Sbjct: 530 ------------------ETPEKLRESRRLFYVGLTRARDEVHMLYSGFVDGR 564


>gi|227356887|ref|ZP_03841266.1| helicase IV [Proteus mirabilis ATCC 29906]
 gi|227162957|gb|EEI47902.1| helicase IV [Proteus mirabilis ATCC 29906]
          Length = 683

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 24/160 (15%)

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           A K+   +DF  L+    +L++K         +      HIL+DE QD S ++  ++ +L
Sbjct: 401 ALKEENAIDFSGLLHQAINLIEK--------GRFVSPWKHILVDEFQDISPLRAALLNAL 452

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
            +         ++  +LFAVGD+ Q+IY F GAE        +             +   
Sbjct: 453 KQ--------QNTQTSLFAVGDDWQAIYRFSGAELLLTTAFHQSF--------GDGAECA 496

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
           L  ++R  + I  V +       N      +S T    ++
Sbjct: 497 LDTTYRFNSTIGDVANTFIQQNPNQLAKPLNSLTKGNKKA 536



 Score = 42.2 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 22/139 (15%)

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            D L+  LN       +  + L        Q     K        +++ MT H +KG ++
Sbjct: 542 DDQLESLLNKMSGYVSDDETILLLARYHYLQPDLLKKAKTRWPKLKLQFMTFHASKGQQA 601

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V ++   S        K     P+        +  P     +                
Sbjct: 602 DYVIILGLQSG-------KDGFPAPARESIIETALLPPVEDYPD---------------A 639

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RL+YV +TRA  Q+ +
Sbjct: 640 EERRLMYVALTRAKKQVWL 658


>gi|251764598|sp|A9KTE7|ADDB_CLOPH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
          Length = 1147

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 190/687 (27%), Gaps = 135/687 (19%)

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             AR     I+ ++  +           + KDI ++        +   + +       I 
Sbjct: 322 AEARHAVIEITRLLREEE---------YRYKDIAIV---SGAMEVYGDIVKRELELAGIP 369

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI---------- 453
              + +  +  +  ++ L +    +    D  +    LK  L +F+ D+I          
Sbjct: 370 CFVDHKKNILTNPVVEFLRSALDVVTHNFDYEAIFRFLKCGLTDFTMDEIDLFENYVIAF 429

Query: 454 -------FKICTQRHETETVYEYIQKFANCGISKFQHV--------------IKYIHELI 492
                  ++   +R         ++K         +                 + ++ L 
Sbjct: 430 GIRGKYRYEHEWERKYKTNYEVDLEKINYVRECILKEFTPLYETLTSKKSSVRECVNALY 489

Query: 493 HIAQFCSPHD----FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
           ++       +    F        +   +  ++   ++  ++ E  +  +         L+
Sbjct: 490 NLLCTYHIEEKIHIFVEKFKAQGEKEDKLRAKEYEQIYRMVLEIFDRMVELLGEDVLPLK 549

Query: 549 ELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           E    L+      K        +++ +  +   +  +   +F +     +    +     
Sbjct: 550 EFRDILDTGFREAKVGLIPPSIDQILVGDIERTRLKDIKALFFLGVNDGIVPKANP---- 605

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                    GI     +    ++ +       + +   E+   LY+ +T+  ++L +   
Sbjct: 606 -------GGGILSDAERQLFADHEIELSPTKRQTAYLTEFY--LYLNLTKPQNKLYLYYS 656

Query: 668 SNTSNEKKSNQRT----------------------WYDMVYDSFHNDERVKKIKLTNSIN 705
               + K                              +++         +  ++      
Sbjct: 657 KLDVSGKSIRASYLLGKISKIFPKLKIYDADRKSREDELLGTDQGLSYLISVLRDYEGEQ 716

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-NPSTIDT 764
              W          +       + + Q +  Q   + L   +   +    +L + + ++ 
Sbjct: 717 PKLWREVYHLYVSGQIKGRISLDKVLQGVFYQNYEQGLTKEVARKLYGETLLGSVTRMEK 776

Query: 765 KGKTNLESLLSDNQTFN-----------RGLIIHKLLQV-----------IFTLPEHKRK 802
                    L    +              G + H+ L+               LPE  R 
Sbjct: 777 YAACAFAHFLQYGLSLEERQEYKISMPDIGSLFHEALERFSKALKELDISWHELPEDVRI 836

Query: 803 NFITSYCTKNAKLWP-------------AKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
           +       +  + +              A   + +L   T+ L + +        SY E 
Sbjct: 837 SLGERCVREAVENFGNGILESSKRSAYLATRVERILQRTTKTLTHQLQQGVFEPGSY-EQ 895

Query: 850 SVSGKINCPKKDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLS 905
             S           + GRID++        ++  + +YK+      ++ ++ Y    QL 
Sbjct: 896 YFSHADRYLN----LRGRIDRVDLYEQDGKLYVKVIDYKSGSTSF-DLMNLYYGLQLQLG 950

Query: 906 IY----EKILKDSYPNKSLV--CLLIY 926
           +Y     +++K+ YPN  +    +  Y
Sbjct: 951 VYLSAAMELMKEQYPNHEIHPAGVFYY 977


>gi|160934432|ref|ZP_02081819.1| hypothetical protein CLOLEP_03305 [Clostridium leptum DSM 753]
 gi|156867105|gb|EDO60477.1| hypothetical protein CLOLEP_03305 [Clostridium leptum DSM 753]
          Length = 1125

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 75/665 (11%), Positives = 177/665 (26%), Gaps = 130/665 (19%)

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A  +A  I  ++  +           + ++I V+ R   +T     +       Y I 
Sbjct: 311 EEADFVARRIQKLVQEE---------GYRYREITVIAR---ETESYRGVLDAALESYGIP 358

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ---- 459
              +    L +   +  +++    + S         +LK+ L     ++I  +       
Sbjct: 359 YFMDQPEPLEEKPLMTLVLSALECVQSGYRSDELFRLLKTGLTELQTEEIAALENYALLW 418

Query: 460 ----RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF------------------ 497
               R   E    + + F+     + Q  ++ ++ L                        
Sbjct: 419 NLSGRRWLEPFTMHPRGFSPEMTEEDQKKLEGLNRLRETVMEPLAQFEESLRSGTGKGIA 478

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVL-----------DEFLNFTLRNEQNSYSS 546
              +      L A +  ++      N     L            E L+      +  + S
Sbjct: 479 YGVYQLLER-LNAAQNIRRMADELENMGEWNLAQEQIRLWDMLMEILDQMALVLKEQHLS 537

Query: 547 LQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            +      +               +EV +     ++      VFL+      F     + 
Sbjct: 538 PRRWSELFQLVVQSEEIAFIPQGVDEVSVGGADRSRPAAPRAVFLIGAEEGEFP----RT 593

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                  +D     +        +++         +    E   L Y+     S++L + 
Sbjct: 594 PVSAGVFSDAERRLMISMGLPLYDSL---------EKLAVEERYLAYMAAVSPSERLFVS 644

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI-KLTNSINKDEWIAYEWSTHHPENTPL 724
             S+  +    +  +    V   F       +  +  + +      A+E +         
Sbjct: 645 YASSDLSGGARSPSSLVREVRKIFPECPVADRSQEAFSDLLWSPEPAFELAASLWREPSE 704

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEP----------------YILNPSTIDTKGKT 768
             E   +      +   +L +  +    EP                  ++ S I+     
Sbjct: 705 REETLKRYFGGLPEYQDRLEAVGRAASEEPIAFQNPENAQKLFGSNLRVSASQIEKYYLC 764

Query: 769 NL-----------ESLLSDNQTFNRGLIIHKLLQV---------IFTLPEHKRKNFITSY 808
                        E   +       G ++H LL+          + ++ + +    I   
Sbjct: 765 RFQYFCRYGLGAKERKPAVFDALEYGSVMHYLLENMLRAFSGETLASMKKQELLAEIRRL 824

Query: 809 C----TKNAKLWPAK------EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK---- 854
                  N   W  K          L  +   LL +  +   ++   +            
Sbjct: 825 LDSYVETNLGGWEEKSPRFRYLLARLADTAQMLLSH--LGKELAQSDFVPADFELSIGKG 882

Query: 855 -------INCPKKDII-ISGRIDQISI----SQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
                  +  P    I + G+ID++ +    S + I + +YKT     + +  + Y    
Sbjct: 883 KELEPLVLEIPGGGQISVEGKIDRVDVMEKPSGKYIRVVDYKTGSKDFK-LSDVLYGLNM 941

Query: 903 QLSIY 907
           Q+ +Y
Sbjct: 942 QMLLY 946


>gi|13476750|ref|NP_108319.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
 gi|14027511|dbj|BAB53780.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099]
          Length = 589

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 20/147 (13%)

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            + +  + +   DF  ++ ++  L++       I   +    +HILIDE QDT+ +Q  +
Sbjct: 168 RFWQRLRNDGRADFSLILYHSLSLMRDHPE---IVEFVASRFSHILIDEFQDTTELQIAI 224

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           +  + E               F VGD  QSI+ F GA P            R        
Sbjct: 225 LGLIAER---------GRTNFFMVGDPNQSIFGFAGARPDLADIFADEVGAR-------- 267

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPE 282
           + + L  +FRS+  I+   +++ +   
Sbjct: 268 TDLVLTGNFRSSEPIIEHAERIIARNP 294


>gi|229916829|ref|YP_002885475.1| UvrD/REP helicase [Exiguobacterium sp. AT1b]
 gi|229468258|gb|ACQ70030.1| UvrD/REP helicase [Exiguobacterium sp. AT1b]
          Length = 964

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 71/176 (40%), Gaps = 25/176 (14%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
           ++  L    L K +   YE+  ++   +DF D+I     ++    V             +
Sbjct: 539 YQRALLFFRLVKPMYRMYEDHLRRTNKIDFNDMINEATSIVSSDAVHLS--------YKY 590

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           I+IDE QD S+ ++ +I ++            +  T+  VGD+ QSIY F G++      
Sbjct: 591 IIIDEYQDISVSRYRLIEAI---------RQKTGSTVMCVGDDWQSIYRFAGSDLSLFTD 641

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +    K A        ++++  ++R++  ++ +  +     +     +  S   +
Sbjct: 642 FEHYFGKSA--------LLKIENTYRNSQQLIDIAGRFVMKNKRQIRKNLSSGKRL 689



 Score = 42.6 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 67/224 (29%), Gaps = 27/224 (12%)

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
            F +  + KI      ++ + +   +F      + +  +     LI   +          
Sbjct: 645 YFGKSALLKIENTYRNSQQLIDIAGRFVMKNKRQIRKNLSSGKRLITPVRVMGIKGKNDF 704

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
            +  ++   Q +   G E     D  L      +  S         +            +
Sbjct: 705 EIALRRALDQIVQSHGPES----DVLLVGRNNFDIKSIEGSASFRVK-HLKDEVQVTDRT 759

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
             +  +  +T H +KGLE+  V L++T +                           P   
Sbjct: 760 HPNLRISFLTAHRSKGLEAENVILINTANSKNGF----------------------PNKI 797

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             + ++S +++  ++    E  RL YV +TR      +    + 
Sbjct: 798 MDDPLLSFVLEKQEELEFGEERRLFYVALTRTKHTTYVLTPDDR 841


>gi|197284679|ref|YP_002150551.1| DNA helicase IV [Proteus mirabilis HI4320]
 gi|194682166|emb|CAR41809.1| putative helicase IV [Proteus mirabilis HI4320]
          Length = 683

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 24/160 (15%)

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           A K+   +DF  L+    +L++K         +      HIL+DE QD S ++  ++ +L
Sbjct: 401 ALKEENAIDFSGLLHQAINLIEK--------GRFVSPWKHILVDEFQDISPLRAALLNAL 452

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
            +         ++  +LFAVGD+ Q+IY F GAE        +             +   
Sbjct: 453 KQ--------QNTQTSLFAVGDDWQAIYRFSGAELLLTTAFHQSF--------GDGAECA 496

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
           L  ++R  + I  V +       N      +S T    ++
Sbjct: 497 LDTTYRFNSTIGDVANTFIQQNPNQLAKPLNSLTKGNKKA 536



 Score = 42.2 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 22/139 (15%)

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            D L+  LN       +  + L        Q     K        +++ MT H +KG ++
Sbjct: 542 DDQLESLLNKMSGYVSDDETILLLARYHYLQPDLLKKAKTRWPKLKLQFMTFHASKGQQA 601

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V ++   S        K     P+        +  P     +                
Sbjct: 602 DYVIILGLQSG-------KDGFPAPARESIIETALLPPVEDYPD---------------A 639

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RL+YV +TRA  Q+ +
Sbjct: 640 EERRLMYVALTRAKKQVWL 658


>gi|294794376|ref|ZP_06759512.1| putative ATP-dependent deoxyribonuclease subunit B [Veillonella sp.
           3_1_44]
 gi|294454706|gb|EFG23079.1| putative ATP-dependent deoxyribonuclease subunit B [Veillonella sp.
           3_1_44]
          Length = 1164

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 110/969 (11%), Positives = 241/969 (24%), Gaps = 224/969 (23%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIR------DRFNTYKMFKSTLASLTLAKYL 133
            QK +   E   K P+    L++   EF   R      +R             L      
Sbjct: 104 KQKELGLLEQATKRPEFSSVLQQLFSEFRAFRVGPADLERGAETVKNNVLQKKLRELAIC 163

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            + YEE   ++   D  D I+   + L +  +            +H+ ID     +   +
Sbjct: 164 MSAYEEELSRHGERD-IDPIMEIVEALPQSPLMEN---------SHVFIDGFHWFTPTHY 213

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR---INQKRATN 250
           E+I +L +                        I       PK +   +R   +  +    
Sbjct: 214 ELIYTLFDLAKEAV------------------ITIDLPMAPKALNLARRGEHLFSRPLEI 255

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +     +++                                  ++          
Sbjct: 256 YDTLVARYGFNINW------------------VGFDGKRGPQIVQELEANYFASPS---- 293

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                        P    +                A  +A  I   I +           
Sbjct: 294 ----KKNTTDATIPLIRGYN-----------REREADAVARRILAYIES--------SEE 330

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + +D+ +++R   ++         +   Y I    + +  + +H   + L AL   +  
Sbjct: 331 ARYRDVCIMLR---ESETYGDTLEKVFARYGIPHFIDRQRPMKNHPLGELLTALFDIVRH 387

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH------- 483
                S   +LK+ L   + + + ++     E    +   ++ +   +  F         
Sbjct: 388 NYSRDSMFLLLKTDLMPLTREAVDELENYVLEFGIDHYKWERESWPYLRGFHEGQDEESH 447

Query: 484 ---------------VIKYIHELIHIAQFCSPHDFFTL------ILGAKKGRQQFISR-- 520
                          ++  +      A     H           +L   +  ++      
Sbjct: 448 VDAPRRARVNKAREIIMDILSPWFDFAANAEGHTGAEWGTQLYGLLEILQVPERLYEWAK 507

Query: 521 -----FGNEVIDVLDEFLNFTLRN-------EQNSYSSLQELISELEQYPPTIKRAHSAN 568
                   E     ++  N  L          ++   +L E++  LE+    +  +    
Sbjct: 508 DAETIGDQESKASHEQMYNAVLSFIDEISMVMKDEILTLDEMMLLLEEGLSDVNYSMIPP 567

Query: 569 H-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + V I T+        P VF++     VF                     I   + + 
Sbjct: 568 SLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSM------------GDEGLIKDKERQE 615

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
             +    L +        E   LLY+ MTRASD L +    +  +            +  
Sbjct: 616 LADAGITLAEGALPKAFNENF-LLYLAMTRASDSLTLSYAGSGEDGTGLEPSLVAKRLES 674

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
             + D+    + +  SI  D    Y W      +   ER   +    +   +   L++  
Sbjct: 675 LGYIDQ---VVDIPLSIAPDTEADYVWRPLQSLSLLSERWGALFSGYEVNPLWWGLYNWA 731

Query: 748 KNDINEPYIL---------------------------------NPSTIDTKGKTNL---- 770
           +        L                                 + + ++   +       
Sbjct: 732 RESETYRPRLAEVSRGIRDNNDVPVITQDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYA 791

Query: 771 -------ESLLSDNQTFNRGLIIHKLLQVIF-----------TLPEHKRK----NFITSY 808
                     +        G  +H  L+ +             L E +++          
Sbjct: 792 QYGLKLEPRPVRSFGAPEIGTFLHANLERLGNYLLENNKQWRDLDEEEQENLCRTVADEI 851

Query: 809 CTKN--AKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCP------ 858
             +N   +       K +   + R L      +        +    +             
Sbjct: 852 LQENQLGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKRSDFDTKYLEQDFGRQGGWDPI 911

Query: 859 ----KKDIIIS--GRIDQISIS--QQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                +D  +   G+ID+I         +  + +YK+        + + Y    QL  Y 
Sbjct: 912 RVSLGEDRYLRLIGQIDRIDEYTRDDQTYGMVIDYKSG-GAHVTAQDVYYGLKLQLMTYL 970

Query: 909 KILKDSYPN 917
             L+ +Y  
Sbjct: 971 LALESAYGK 979


>gi|99034576|ref|ZP_01314542.1| hypothetical protein Wendoof_01000641 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 233

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 73/240 (30%), Gaps = 49/240 (20%)

Query: 441 LKSPLFNFSEDDIFKICT-QRHETETVYEYIQ------KFANCGISKFQHVIKYIHELIH 493
           +  P  +     + KI T  +    + +E  +      +            +  I     
Sbjct: 2   VNRPKRSIGATTLKKIYTTAQDNKISFFEAAKILVNSNQVTERIKLSLNDFLNKIKAWEE 61

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRF--GNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
           I      H+F  ++       +   +    G   I+ + E ++     +           
Sbjct: 62  IVSVKPLHEFVKIVANQSGYIEMLENEEVTGLARIENVKELISSLKNFDNA--------T 113

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           + LE     ++  +  N + V +MT+H AKGLE   VFL      +F H+          
Sbjct: 114 TFLEHISLVMEVDNMNNDDTVYVMTLHAAKGLEFQCVFLPGWEEGLFPHQRSFDDKSG-- 171

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                            EE  RL YVG+TRA ++LII       
Sbjct: 172 ------------------------------KALEEERRLAYVGITRAKERLIISCADRRE 201


>gi|91790895|ref|YP_551846.1| UvrD/REP helicase [Polaromonas sp. JS666]
 gi|91700775|gb|ABE46948.1| UvrD/REP helicase [Polaromonas sp. JS666]
          Length = 600

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 73/578 (12%), Positives = 149/578 (25%), Gaps = 139/578 (24%)

Query: 100 LKKSQDEFIKIRDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL--IIN 155
                +    IR  F +Y   + +        A  + + Y E  + +      DL  ++ 
Sbjct: 131 FSSDMELVKDIRKEFESYMYAIDREAHELSGPAARVVSRYMERLRASRA---TDLYTVMR 187

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              L         +          +L+DE QDT  +Q   I +             +   
Sbjct: 188 DCALFADNGTIPPM------RYTDMLVDEGQDTDELQKVWIFAHAR----------AGIN 231

Query: 216 LFAVGDEKQSIYSFHGAE-PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           +  VGD+ QSIY +  A     +                    IEL  +FR   +ILT  
Sbjct: 232 VTIVGDDDQSIYEWRHALGYSGMKSFMDTFG---------AKRIELGDNFRCREEILTHA 282

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             +    +N       +      + +       V                          
Sbjct: 283 VLLVQNNQNRLAKHLVAQRGPGGKIASYHTASPVSQ------------------------ 318

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                             ++++I                 ++ VL RK K    +     
Sbjct: 319 ---------------CKELADLISR---------TPNAHSNVAVLARKNKSLNDLELSLT 354

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
             +                D+  +   + L + ++       F C+    L +  + ++ 
Sbjct: 355 ERQV-----AYVRLGKSFWDNPWVATYLGLLQSLVDASPVGVFGCLGTLGLDDAVKTELL 409

Query: 455 KICTQRHETETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           +    R E     +     +         +   K+        +  +      ++L   K
Sbjct: 410 QSMRGRAEDFLEAQVPDLDSATSTDAALIKEFAKFCKYWRDQLRSQAGGSVDEVVLDVGK 469

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
                      +    + E +       +    ++   +S + +        +S     V
Sbjct: 470 WLA------SKQRSKGIKEVIEGAAATLKMLKGTISSRLSFIARNK------NSTETGPV 517

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +MT+H +KG+E   V ++D G                                      
Sbjct: 518 TLMTMHASKGMEFETVHVIDAGKP------------------------------------ 541

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                       E   RL+YV +TRA ++  +      
Sbjct: 542 ---EDGSDLVNTEAERRLMYVALTRAKNRCFVWYSGEP 576


>gi|117623172|ref|YP_852085.1| DNA helicase IV [Escherichia coli APEC O1]
 gi|237707053|ref|ZP_04537534.1| HelD [Escherichia sp. 3_2_53FAA]
 gi|91071632|gb|ABE06513.1| DNA helicase IV [Escherichia coli UTI89]
 gi|115512296|gb|ABJ00371.1| HelD [Escherichia coli APEC O1]
 gi|226898263|gb|EEH84522.1| HelD [Escherichia sp. 3_2_53FAA]
 gi|315287593|gb|EFU46999.1| UvrD/REP helicase [Escherichia coli MS 110-3]
          Length = 715

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 584

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 585 SGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|331087019|ref|ZP_08336094.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409469|gb|EGG88912.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 1136

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/739 (9%), Positives = 202/739 (27%), Gaps = 110/739 (14%)

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
           A+  + +    ++   +R       +    +     +     +  + +  D L   +  +
Sbjct: 261 AEEENIEVEPPVQLYGNRGEVPVRFRENLPLAFLEQNLFRYTKRVYDNKQDMLSLHAVKN 320

Query: 344 ILAR--RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  I   I  ++ T         +  + +D+ V+V    D                
Sbjct: 321 PKEESVFIVSEILRLVRT---------KGYRYRDMAVIV---SDMETYAEYMERAFRICG 368

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI----- 456
           +    + +  +  +  ++ L +L   I       S    L++ L  F+ +++  +     
Sbjct: 369 VPFFMDHKRSVLLNSFVEYLRSLLAMIDENFSYESTFRFLRTNLTGFTREEVDDVENYVV 428

Query: 457 ------------------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
                                  E    +   ++     + +   V+K   + +      
Sbjct: 429 ALGIRGYKKWKEMWVRQSPHADAEDMLRWNAFRQKFIEKLERLTEVLKCRKKTVREVTEA 488

Query: 499 SPHDFFTLILGAKKGRQQF---------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
                    +  K G  +          +++   ++  ++ E  +           SL E
Sbjct: 489 IYAFLVQEEMQQKIGIYEVQFQERGQLVLAKEYAQIYRIVLELFDKFTELLGEEQISLGE 548

Query: 550 LISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI-KKMH 607
               L+      K        ++V +  +   +  +  V+FL          K     + 
Sbjct: 549 YRELLDAGLQEAKVGVIPPGIDQVVVGDIERTRLQDVKVLFLAGVNDTWLPGKQGAGGLL 608

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                       + +         +     +L  +   EY  L +  ++     L    +
Sbjct: 609 SEYDRERFQEQKVALAPGAKEQAYIQKFYLYLHLTKPSEYLYLTFSKISSEGKSLR-PAY 667

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                ++   +    +     F   E   +  L   +   +  +  +     E     R+
Sbjct: 668 LIADLKRMYPELLVEEEEDRPFWEKELTPETALPYLVEGLQVRSETFGGAWKELYTWYRK 727

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYIL---------NPSTIDTKGKTN--------- 769
                   EQ +         + ++E             + + ++               
Sbjct: 728 HPKWHAQMEQLLAANHLKRPHDQLSEEVARKLYGTILENSVTRLEKFSACAYAHFLTYGM 787

Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
              E  +   +  + G I H  ++      E  +  + T       +L        +   
Sbjct: 788 KLEERTVYGFKPVDLGNIFHSAMEQFSKKLEEHQVTWTTVSEELREQLIEESVEAGVTNY 847

Query: 828 ITRLLENP--------MMTTAMSCDSYS---------------EVSV-------SGKINC 857
              +L +          M   +    ++               E+S        S  ++ 
Sbjct: 848 GNAVLYSSSRNEYVITRMKRLLRRTVWALTKQLEKGDFVPAGYEISFGNLAHLESVNLSL 907

Query: 858 PKKDII-ISGRIDQI--SISQQNIFI--FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            +   + + G+ID++     ++++++   +YKT      ++  + +    QL +Y   + 
Sbjct: 908 SEHARMRLRGKIDRVDLYEDEEHVYVKVIDYKTGAKAF-QLGEMYHGLQLQLIVYLNAVM 966

Query: 913 DS----YPNKSLV-CLLIY 926
           +     +P K +V   + Y
Sbjct: 967 EMEEQKHPEKEIVPAGIFY 985


>gi|315296259|gb|EFU55566.1| UvrD/REP helicase [Escherichia coli MS 16-3]
          Length = 715

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 584

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 585 SGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|302387816|ref|YP_003823638.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
 gi|302198444|gb|ADL06015.1| UvrD/REP helicase [Clostridium saccharolyticum WM1]
          Length = 619

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/530 (13%), Positives = 155/530 (29%), Gaps = 150/530 (28%)

Query: 149 FED--------LI-INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           F+D        +I + T  +        ++   +    +H+ +DE QDT+ +Q+++++  
Sbjct: 184 FDDNPSCLTFKMISMLTIYIFSTNP---YVLRGLQATYSHVFLDEFQDTTSLQYDLVKM- 239

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                      +S   + AVGD KQ I  + GA        ++               I 
Sbjct: 240 --------GFQNSNSKITAVGDNKQRIMVWAGARKTIFEDFQQDF---------NAMKIP 282

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L ++ RS   ++ +           Q L   S                V L +   S+  
Sbjct: 283 LLMNHRSAPRLVDL-----------QKLMYTSLQ--------------VDLIDLQTSKKW 317

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
            + +   + +           +  + A+ +   I+  I             +  KDI +L
Sbjct: 318 EKNDGDIKLYI--------SENEDLEAKYLVADITEKISNG----------VSLKDICIL 359

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVG-NDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           V  ++           + + + I      +   +     +  ++   +  +++     + 
Sbjct: 360 V--KQLPGNYIDTLVTVLSSFGIKARIETEYQDILKEFIVVLVLNTLKVSINRRSPTEWE 417

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC-----GISKFQHVIKYIHELIH 493
            +  +       D   +      E   +   +   +         ++F  VI  I +   
Sbjct: 418 YVNNAMEGLKGFDSTERSDAYDQEHINLINLLNATSEKLALDITETEFHEVINNIIQFFD 477

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT-LRNEQNSYSSLQELIS 552
           I +  + +  +                 GN   D++++ ++      E+ +  +L     
Sbjct: 478 IEKIKALYPTYAQ---------------GNFFEDIVNKMIDLLWKEFEECNNWNLS---- 518

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                       +      + IMT+H +KGLE   V+ V      F              
Sbjct: 519 ----------FENFQGLYSIPIMTIHKSKGLEYTAVYFVGLEDGAFWSFRN--------- 559

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                           EE     +V ++RA + L
Sbjct: 560 ------------------------------QPEEDRCAFFVALSRAKEFL 579


>gi|325927577|ref|ZP_08188809.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Xanthomonas perforans 91-118]
 gi|325542042|gb|EGD13552.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Xanthomonas perforans 91-118]
          Length = 574

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 91/305 (29%), Gaps = 14/305 (4%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
               F  + +       +   +      A                +   +  L       
Sbjct: 284 HGTAFFDAIMAAIEGGILSKVSYKPEWLASLWHWFETFAAAPALNTAPHAKLLKLTAAEL 343

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
                ++   ++P     +    D ++    R   ++  +       L     A     K
Sbjct: 344 AAGTNKKFVDRTPS--SPMSHQIDGYLTALARAEEWRSRRRIALLHALRDDAIARLALLK 401

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           ++  V  ++DL+      L+     A +  ++  +    L+DE QDT   QW +  ++  
Sbjct: 402 RQRRVQTYDDLVDGVAHALQGAQADALV-KRLRTQYAIALVDEFQDTDDRQWSIFSNVFG 460

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +  + +        LF +GD KQ+IY F G + +  L            A        L 
Sbjct: 461 EGRLARAA-GLEPALFLIGDPKQAIYGFRGGDVRTYL----------AAAVTAELAPPLS 509

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            +FRS   +L  +D +++    A     D       R+        +Q            
Sbjct: 510 HNFRSRPGVLAAIDALYAQAGYADAFLTDGIAFHPVRAGTKRVDEDLQRNGVTAPALTLW 569

Query: 322 CNPQQ 326
             P+ 
Sbjct: 570 RAPEP 574


>gi|117165365|emb|CAL64823.1| putative helicase [Pseudomonas extremaustralis]
          Length = 597

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 73/480 (15%), Positives = 139/480 (28%), Gaps = 103/480 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +   + A Y     +N  +DFE ++ + + L+      + +  K+      IL+DE Q
Sbjct: 158 HAIIHRVLAEYFRILAENRQIDFELILWHASQLIDLNPAISVLLSKL---FALILVDEYQ 214

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT  IQ+ ++ S+           +    LF VGD  Q+IY   G  P  +   +R+ + 
Sbjct: 215 DTKQIQYSILGSILR-------AGAGATRLFMVGDPNQAIYGSLGGYPIEIGELRRLTEV 267

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           R           +L  ++RS++ I+                       +   +      G
Sbjct: 268 RIAEQ-------QLSQNYRSSSRIID----------------YFGNFNVYSTAIAAAGDG 304

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V  +  +VS                                + + I  +I  +      
Sbjct: 305 RV--YPSLVSYDSGVTRDD-----------------------LVHEIVRLIRHNV----- 334

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
           +   I   ++ VL         +  +TR L  +           +            L R
Sbjct: 335 ETLGIPPSEVCVLAP---QWLHLASMTRQLVVNMPDYQFDGPGMVPFARDIENFWYKLSR 391

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             L++     +V  L+      SE     I T R   ++             +   ++ +
Sbjct: 392 LALTEPSPSLYVRRLRWAGEVISEMKDAGIETSRLSRKSFLRECNAIPIDEDNGLAYLRR 451

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
           +   L                            R G ++ D           + Q  + S
Sbjct: 452 FFATLFE--------------------------RLGIQISD-----FAQLQEHHQAFFES 480

Query: 547 LQELISELEQYPPTIKRAHS------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +  I++LE          +       N   + + T H   G E  VV        +  H
Sbjct: 481 SESRIAKLEAEGVDAIGDIAFFRKVFQNRTGITVFTFHGVNGAECDVVIAYALLEGMVPH 540


>gi|325182777|emb|CCA17232.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 977

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 94/845 (11%), Positives = 242/845 (28%), Gaps = 146/845 (17%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y +  +   +  +  +I++   LL+ ++  +          + I+IDE+++ +    
Sbjct: 201 YKLYRQILESKNLSSWSGIILDGLSLLRSQNNVSSFL----SGYSDIVIDELEEMNPASI 256

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           +++ +L +   +                  QS  +F         R   +  +   N+  
Sbjct: 257 KILAALIQQPNI------------------QSTMAFCHGSLDHRHRNDLLLDRLVANSEV 298

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             +   L  + RS               E ++ ++ ++   +  + S+ G          
Sbjct: 299 FINQHILEKNVRS---------------EFSRCIASETACLLSKKISKSGHKPL------ 337

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                      ++       +          +A+ I + +                  + 
Sbjct: 338 -----------EKLENFKCLEFDSIGEEELYVAQSIKHKL---------------TFCEP 371

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR-FILTDHLAIKDLMALGRFILSQE 432
            DI+V      D   I  +   +      S + +D+   L     +  + ++ + + +  
Sbjct: 372 ADIVVACSTIADIARIELICEDMSLPIIRSTLRSDKNGYLLHQPGVSQVFSMLQVLAAPS 431

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI-------SKFQHV 484
           D  S   +L+S  F+ S +   ++        +++   I++  +               +
Sbjct: 432 DTHSLYDVLRSNSFDVSPELFSQLLTNAHKMHKSLLTVIREHVSDPETGNLTTAQPLVKL 491

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS- 543
           ++ +  L  ++           I+      +  ++    E  ++   F NF    E    
Sbjct: 492 VRMLDTLQPLSHQEPTTKVVHQIVRELGLYEALVTPTCPEDEEMAFTFANFLRAIELAEN 551

Query: 544 ---YSSLQELISELEQYPPTIKRAHSANHNE-----VRIMTVHTAKGLESPVVFLVDTGS 595
                 L  ++  L     T +     +        V  +   +   L+S  ++ V    
Sbjct: 552 CVESPFLSFVVPYLRHLGETRQSDIDGSETNDQYLRVLHLPKASVSELQSKHLYFVAMSD 611

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
           + +  +  +     P+   +  +                     +    EE    +Y  +
Sbjct: 612 RKYPGRIRRLGIAPPADLLEDVMH-----------------SQTRSKFLEERQYTMYNAL 654

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
             A+D + I    N SN  +  + +                  +L      +       +
Sbjct: 655 CMAADSITISFAQNVSNSPEREKPSR------ILEPIWPSSSSQLPTKPPANSDPETFET 708

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
           T  P+    +    +   +   +I +    P +  ++    L+                 
Sbjct: 709 TTPPKPLDFKPSYQL-DHLSFSQIAEYQRCPHRYFLHRVLKLS---------------TD 752

Query: 776 DNQTFNRGLIIH----KLLQVI---FTLPEHKRKNFITSYCTK------NAKLWPAKEYK 822
           DN     G  +H         +    +  +  RK    S                A +  
Sbjct: 753 DNPALIYGRALHESIAAFANHLRENPSTTDSARKEAEQSAVAALTRSWVEGSFASATQAT 812

Query: 823 NLLLSITRLLENPMMTTAMSCDS--YSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIF 879
            LL      L+  +     +     + E          + D+   G  D+I  ++   I 
Sbjct: 813 LLLQQANSDLDQFIGHHYNNPTEILHVEAPF--TFQVEEVDVNFRGIWDRIDRNEKNEIV 870

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFIIPQ 937
           I EYK++         +      QL +Y    +  Y +    +   +I   +  +  + +
Sbjct: 871 IKEYKSNVSRRSRNVALMAKKSLQLQLYVFAYQRFYKSLPDSVELSIIGTKDRALLAVTK 930

Query: 938 NKLNK 942
           +  N+
Sbjct: 931 DDENE 935


>gi|324009894|gb|EGB79113.1| UvrD/REP helicase [Escherichia coli MS 57-2]
          Length = 715

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 584

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 585 SGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 46.5 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|269977490|ref|ZP_06184462.1| putative UvrD/REP helicase family protein [Mobiluncus mulieris 28-1]
 gi|269934406|gb|EEZ90968.1| putative UvrD/REP helicase family protein [Mobiluncus mulieris 28-1]
          Length = 1180

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 109/1111 (9%), Positives = 283/1111 (25%), Gaps = 250/1111 (22%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  F L L+ +     +      +   +++ +      E    +  +    +    ++  
Sbjct: 81   RRAFDLRLDNAVVGDSRSFASAVWGFFNEMRRAAD-CSEVRLLSDAEVLAWMDPWLESNV 139

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                 + + +    Q       +      +K   L       +    K+R +  T +   
Sbjct: 140  PGGFAAAVGTQGFRQN--LLDGLYRVRCVEKQRTLGALHPWVRGILGKLRQQVKTSQSQG 197

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                    A  L   Y +A +                             K   + + +L
Sbjct: 198  GKNPWELDAGSLYEEYLQALEA---------------------------GKHVAQPSLVL 230

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +D+ Q+ + +  E++               +   + AVG    S   + G EP+ + +  
Sbjct: 231  LDDWQNANGLMQEIVCQWAA----------TGTQVVAVGLADLSCNEYRGGEPQALQQLA 280

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            +  Q   +  G+K     L  ++                      +++   +  R   + 
Sbjct: 281  QRLQANLS--GRKVRQKMLTETY----------------------VNDRLESFWRDTVNT 316

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             G   T+ LW+ +   H                 L + ++ +   R I   +        
Sbjct: 317  FGVSTTLDLWKPLGEAHPVPQEKPSAEDGLSGVHLIEAANDARQYRFIGRFLQE------ 370

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK-D 420
                     +    + VLV  +     +    + L     +    ++     +       
Sbjct: 371  -VHLFSDPSVPYSQMAVLVNSKAVGHSVCQQLKSL----GVPASLSEATSQINEGRFSAW 425

Query: 421  LMALGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC- 476
            L+ L +   ++  D +   +   L+S  F +    + ++     +          F+   
Sbjct: 426  LLRLLKLACAKTWDFTDFLITDFLQSEFFGWGSARLRQLDDALKDLAYPMPRQSDFSQAA 485

Query: 477  -----------------GISKFQHVIKYIHELI-----------HIAQFCSPHDFFT--- 505
                              +   +   + +                +       + +    
Sbjct: 486  DFESAISAWEMNTNKLGILPWVKEFWEDLLASRPFHNQDLETVFALGDAKRLAELYEVLV 545

Query: 506  -----------------LILGAKKGRQQFISRFGNEVI-------------DVLDEFLNF 535
                              +L    GR + +                     D++ +    
Sbjct: 546  KVQDLWQKDSGNVQMMLWVLWDGLGRGEELRELTFTSELDSIVRDQLNLELDLVMDLFKA 605

Query: 536  TLRNEQNSYSSLQELIS---ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                EQ        + +        P      H  + + V I T   A      VV +  
Sbjct: 606  ADWYEQRYPGGDAAVFAKKMFDRSLPTVSVAPHHQSTDAVTITTPIGAASRHWKVVAVAG 665

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                 +  +      +  S+ D     +    + +    +  +    + S   +  R   
Sbjct: 666  LNDGAWPSRSWPGDLLGTSMFD-----LSRDDTGTDCANLEVIKAGFQWSFHADLRR-FL 719

Query: 653  VGMTRASDQLII--------------------------------CKHSNTSNEKKSNQRT 680
              +TRA++ L++                                      +    +   +
Sbjct: 720  AAITRATETLVLGTTTGDFESPSPLVLRLADNPAIVVHKDVGEFTSKPEGTENSGAGTAS 779

Query: 681  WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP--LEREETIKQLMDEQK 738
            +  +     +  + V ++++   ++  +       +         L              
Sbjct: 780  FALLDNPPSNLRDMVARLRILTMLSDAQVQMLGVGSAEQSEAASLLAWLGNAPGSAARAA 839

Query: 739  IPKKLFSPIKNDINEPY--------------ILNPSTIDTKGKTNLESLLSDNQ------ 778
             P+     ++  + EP                +  S +++      ++ +S         
Sbjct: 840  NPENWMGILRPTVVEPAVSAGETTVENKPVFRIRASGMESLLNNPFDTEMSRLGYEDERE 899

Query: 779  ----TFNRGLIIHKLLQVI-----------FTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                    G +IHK+ + +             + + KR+           KL      +N
Sbjct: 900  EEYNAAIIGTLIHKVAEEMGRRHWYGSSCDDKVDKLKREEICEETAGLMEKLLEGSRAEN 959

Query: 824  ------------LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
                        LL  +   L +  + +   C     +  S  +      I  + RID++
Sbjct: 960  WMFINFERRLNYLLKRMNEFLYDHQVPSLFECGYRMTIPDSNNL----GQISYTARIDRV 1015

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV---------- 921
              ++  I + +YKT          +      QL +Y+K   +    + +           
Sbjct: 1016 LFTESGIVLADYKTGSLTNYTKPKVANN--LQLLLYQKAFNE---GRPIGGAPQGLVADA 1070

Query: 922  CLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
              ++ +   K  ++ Q  L      +    P
Sbjct: 1071 AWIVGLRGDKTTVVAQGSLADELTVVKIAKP 1101


>gi|325663488|ref|ZP_08151898.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470387|gb|EGC73618.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 1136

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/739 (9%), Positives = 201/739 (27%), Gaps = 110/739 (14%)

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
           A   + +    ++   +R       +    +     +     +  + +  D L   +  +
Sbjct: 261 AAEENIEVEPPVQLYGNRGEVPVRFRENLPLAFLEQNLFRYTKRVYDNKQDMLSLHAVKN 320

Query: 344 ILAR--RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  I   I  ++ T         +  + +D+ V+V    D                
Sbjct: 321 PKEESVFIVSEILRLVRT---------KGYRYRDMAVIV---SDMETYAEYMERAFRICG 368

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI----- 456
           +    + +  +  +  ++ L +L   I       S    L++ L  F+ +++  +     
Sbjct: 369 VPFFMDHKRSVLLNSFVEYLRSLLAMIDENFSYESTFRFLRTNLTGFTREEVDDVENYVV 428

Query: 457 ------------------CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
                                  E    +   ++     + +   V+K   + +      
Sbjct: 429 ALGIRGYKKWKEMWVRQSPHADAEDMLRWNAFRQKFIEKLERITEVLKRRKKTVREVTEA 488

Query: 499 SPHDFFTLILGAKKGRQQF---------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
                    +  K G  +          +++   ++  ++ E  +           SL E
Sbjct: 489 IYAFLVQEEMQQKIGIYEVQFQERGQLVLAKEYAQIYRIVLELFDKFTELLGEEQISLGE 548

Query: 550 LISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI-KKMH 607
               L+      K        ++V +  +   +  +  V+FL          K     + 
Sbjct: 549 YRELLDAGLQEAKVGVIPPGIDQVVVGDIERTRLQDVKVLFLAGVNDTWLPGKQGAGGLL 608

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                       + +         +     +L  +   EY  L +  ++     L    +
Sbjct: 609 SEYDRERFQEQKVALAPGAKEQAYIQKFYLYLHLTKPSEYLYLTFSKISSEGKSLR-PAY 667

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                ++   +    +     F   E   +  L   +   +  +  +     E     R+
Sbjct: 668 LIADLKRMYPELLVEEEEDKPFWEKELTPETALPYLVEGLQVRSETFGGAWKELYTWYRK 727

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYIL---------NPSTIDTKGKTN--------- 769
                   EQ +         + ++E             + + ++               
Sbjct: 728 HPKWHAQMEQLLAANHLKRPHDQLSEEVARKLYGTILENSVTRLEKFSACAYAHFLTYGL 787

Query: 770 --LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
              E  +   +  + G I H  ++      E  +  + T       +L        +   
Sbjct: 788 KLEERAVYGFKPVDLGNIFHSAMEQFSKKLEEHQVTWTTVSEELREQLIEESVEAGVTNY 847

Query: 828 ITRLLENP--------MMTTAMSCDSYS---------------EVSV-------SGKINC 857
              +L +          M   +    ++               E+S        S  ++ 
Sbjct: 848 GNAVLYSSSRNEYVITRMKRLLRRTVWALTKQLEKGDFVPAGYEISFGNLAHLESVNLSL 907

Query: 858 PKKDII-ISGRIDQI--SISQQNIFI--FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            +   + + G+ID++     ++++++   +YKT      ++  + +    QL +Y   + 
Sbjct: 908 SEHARMRLRGKIDRVDLYEDEEHVYVKVIDYKTGAKAF-QLGEMYHGLQLQLIVYLNAVM 966

Query: 913 DS----YPNKSLV-CLLIY 926
           +     +P K +V   + Y
Sbjct: 967 EMEEQKHPEKEIVPAGIFY 985


>gi|296103028|ref|YP_003613174.1| DNA helicase IV [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057487|gb|ADF62225.1| DNA helicase IV [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 677

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 90/294 (30%), Gaps = 29/294 (9%)

Query: 10  NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
           + +    +     +       +     L  +T     L      QQ S+ +   + +   
Sbjct: 262 DITARTFHALALHIIQQGSKKVPSISKLENDTQARQALFIKAWRQQCSEKKAQAKGWRQW 321

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL-- 127
               L            +++ ++     ++                     +   A    
Sbjct: 322 LENELNWDVPEGSFWQDEKLARRLGSRLDRWVSLM-RMHGGTQAEMIESAPEDIRALFSK 380

Query: 128 --TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              L   L   ++ A K+   +DF  LI     +L+K         +      HIL+DE 
Sbjct: 381 RVKLMAPLLKAWKTALKEENAVDFSGLIHQAIIILEK--------GRFVSPWKHILVDEF 432

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD S  +  ++ +L           +   +LFAVGD+ Q+IY F GA+            
Sbjct: 433 QDISPQRAALLSALR--------AQNKHTSLFAVGDDWQAIYRFSGAQLSLTTAFHHYF- 483

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                   +    +L  ++R  + I  + ++      +      +S      ++
Sbjct: 484 -------GEGDRSDLDTTYRFNSRIGEIANRFIQQNPHQLAKPLNSLRAGDKKA 530



 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 101/340 (29%), Gaps = 42/340 (12%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLK 397
              LARR+   +   +    +    +  +I+   +DI  L  KR     PL+      LK
Sbjct: 338 DEKLARRLGSRLDRWVSLMRMHGGTQAEMIESAPEDIRALFSKRVKLMAPLLKAWKTALK 397

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPLFN 447
            +  +   G     +      + +      ++ +  D+S                + LF 
Sbjct: 398 EENAVDFSGLIHQAIIILEKGRFVSPWKHILVDEFQDISPQRAALLSALRAQNKHTSLFA 457

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFF 504
             +D          +      +   F     S           I E+ +     +PH   
Sbjct: 458 VGDDWQAIYRFSGAQLSLTTAFHHYFGEGDRSDLDTTYRFNSRIGEIANRFIQQNPHQLA 517

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +   + G ++ ++       D L+  L+      +     L        +     K A
Sbjct: 518 KPLNSLRAGDKKAVTLL---ADDQLEPLLDKLSGYAKPDERILVLARYHHLKPAALEKAA 574

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 ++  MT+H +KG ++  V +V                         G P    +
Sbjct: 575 TRWPKLQLDFMTIHASKGQQADYVIVVGLKEGS------------------DGFPAPARE 616

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           S     ++             E  RLLYV +TRA  ++ +
Sbjct: 617 SVMEEALLPVPEDFPDA----EERRLLYVAITRARHRVWL 652


>gi|331646223|ref|ZP_08347326.1| helicase IV (75 kDa helicase) [Escherichia coli M605]
 gi|331044975|gb|EGI17102.1| helicase IV (75 kDa helicase) [Escherichia coli M605]
          Length = 715

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 584

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 585 SGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 46.5 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|291616951|ref|YP_003519693.1| HelD [Pantoea ananatis LMG 20103]
 gi|291151981|gb|ADD76565.1| HelD [Pantoea ananatis LMG 20103]
          Length = 684

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 81/284 (28%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +         N         L                    L 
Sbjct: 296 LESDAAARRALLIDIWRQQCHEKKAQANGWRQWLRDELAWEVGEGPF------WQDDRLA 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+       +          +    +   ++  +             + L   L  
Sbjct: 350 ERLAPRLERWLSLMRMHGGAQAAMIDGVPEALRELFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K+   +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKEEGAVDFSGLIHQAVAILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +   TLFAVGD+ Q+IY F GAE                    + 
Sbjct: 450 LSALRQ--------QNKRTTLFAVGDDWQAIYRFSGAEMSLTTAFHHYF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R    I  V ++      +      +S      +S
Sbjct: 494 DRCVLDTTYRFNDRIGEVANRFIQQNPHQLRKPLNSLVKGNKKS 537



 Score = 43.0 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 57/377 (15%), Positives = 110/377 (29%), Gaps = 45/377 (11%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS---ASILARRIAYTISNMIG----TD 360
           + +W Q   +  +Q N  ++           E        LA R+A  +   +       
Sbjct: 308 IDIWRQQCHEKKAQANGWRQWLRDELAWEVGEGPFWQDDRLAERLAPRLERWLSLMRMHG 367

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
              +     V +A   L   R +   PL+      LK +  +   G     +      + 
Sbjct: 368 GAQAAMIDGVPEALRELFSKRIKLMAPLLKAWKSALKEEGAVDFSGLIHQAVAILEKGRF 427

Query: 421 LMALGRFILSQEDDLSFVCM-LKSPLF-----------NFSEDDIFKICTQRHETETVYE 468
           +      ++ +  D+S     L S L                  I++         T + 
Sbjct: 428 ISPWKHILVDEFQDISPQRAALLSALRQQNKRTTLFAVGDDWQAIYRFSGAEMSLTTAFH 487

Query: 469 YIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +   +   C +         I E+ +     +PH     +    KG ++ I+       D
Sbjct: 488 HYFGEGDRCVLDTTYRFNDRIGEVANRFIQQNPHQLRKPLNSLVKGNKKSIALLP---QD 544

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L+  LN      +     L        +     K         +  +T+H +KG ++  
Sbjct: 545 QLEPLLNKLSGYAKPHERVLILARYHYLRPDVLDKAKTRWPKLNIDFLTIHASKGQQADY 604

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V L+                               P ++  + I   L+   +     E 
Sbjct: 605 VILLGLQQGK----------------------EGFPAAQRESIIEEGLLPQPEAFPDAEE 642

Query: 648 NRLLYVGMTRASDQLII 664
            RL YV +TRA  Q+ +
Sbjct: 643 RRLAYVALTRARQQVWL 659


>gi|227111642|ref|ZP_03825298.1| DNA helicase IV [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 685

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   +++A K    +DF  LI    +LL K         +      HIL+DE Q
Sbjct: 389 VRLMAPLLKAWKKALKDENAVDFSGLIHQAVNLLDK--------GRFVSPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L           +S   LFAVGD+ Q+IY F GAE       ++    
Sbjct: 441 DISPQRASLLAALRR--------QNSRTCLFAVGDDWQAIYRFSGAELALTTAFEQHF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                        L  ++R    I  + +              +S +    ++
Sbjct: 491 ------GVGEQCALDTTYRFNERIGEIANTFIQQNPYQLKKPLNSLSKGDKKA 537



 Score = 46.1 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 110/387 (28%), Gaps = 49/387 (12%)

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS-------ILARRIAYTIS 354
                  +L      Q  ++   Q   W  +     +             LA R+A  + 
Sbjct: 298 SDAKQRRELLISHWQQQCAEKKTQANGWRRWLTEELEWDVPEGDFWNDPKLAGRLAGRLE 357

Query: 355 NMIGTDTIFSNGKKRVIQAKDILV----LVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +G        +  +++     +      R R   PL+    + LK++  +   G    
Sbjct: 358 RWLGLMRTHGGSQSDMVELAPESIRTEFQQRVRLMAPLLKAWKKALKDENAVDFSGLIHQ 417

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQR 460
            +      + +      ++ +  D+S               ++ LF   +D         
Sbjct: 418 AVNLLDKGRFVSPWKHILVDEFQDISPQRASLLAALRRQNSRTCLFAVGDDWQAIYRFSG 477

Query: 461 HETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
            E      + Q F               + I E+ +     +P+     +    KG ++ 
Sbjct: 478 AELALTTAFEQHFGVGEQCALDTTYRFNERIGEIANTFIQQNPYQLKKPLNSLSKGDKKA 537

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
           ++    E ++     L+      +     L        +     K A    +  +  MTV
Sbjct: 538 VTILPQEQLEP---LLDKLSGFVKADERILVLARYHHLRPAILEKAATKWPNLHIDFMTV 594

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KG ++  V +V             +  ++ ++                         
Sbjct: 595 HASKGQQAEYVIIVGMHEGKDGFPAPARESVIETVLLPEPEDFPD--------------- 639

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLII 664
                   E  RLLYV +TRA  ++ +
Sbjct: 640 -------AEERRLLYVALTRAKHRVWL 659


>gi|226320834|ref|ZP_03796387.1| ATP-dependent DNA helicase [Borrelia burgdorferi 29805]
 gi|226233776|gb|EEH32504.1| ATP-dependent DNA helicase [Borrelia burgdorferi 29805]
          Length = 242

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YEE  +     DF+DLI+   +LL      + IR K  +   ++LIDE QDTSLIQ
Sbjct: 166 IYRLYEERLRLYNSFDFDDLILKPKELLSNN---SDIRNKYSKRYKYVLIDEFQDTSLIQ 222

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           +  IR L            +   L  VGD+ 
Sbjct: 223 YNFIRLLI-----------NHSNLCCVGDDD 242


>gi|221640075|ref|YP_002526337.1| DNA helicase [Rhodobacter sphaeroides KD131]
 gi|221160856|gb|ACM01836.1| DNA helicase [Rhodobacter sphaeroides KD131]
          Length = 1695

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 127/373 (34%), Gaps = 52/373 (13%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +    + L+E Y  + ++ +   +     +     L  +T      +  + L    Q + 
Sbjct: 1030 RIEEAVRLSEDYFALDQESFLRRWMPGRGVE----LRRQTTGKAWKQIVEDLGNPVQQEI 1085

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            + +     +   L    + +  ++   +++ +  L+ K +  +   +   +R    ++  
Sbjct: 1086 VADDREETNVLVLAGPGSGKTRVL---VHRIAYLLRVKREDPRGILVLSYNRHAAAEIRA 1142

Query: 122  STLAS-------------LTLAKYLN-AHYEEAKKKNCVLDFEDLIINTNDLLKKRD--- 164
                                LA  L  A +     +    DF+D++      +       
Sbjct: 1143 RLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQR--DFQDVLREAVRQINGEGLSR 1200

Query: 165  -VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              +   R  + Q    IL+DE QD    ++++I ++        +      +LFAVGD+ 
Sbjct: 1201 TEAEAQREALIQGYRWILVDEYQDIGREEYDLIAAVAGRSLEDPDQR---LSLFAVGDDD 1257

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q+IY+F+GA    + R +   + R            L  ++RST  I+   ++V      
Sbjct: 1258 QNIYAFNGASVSYIRRFEEDYRARPK---------FLTENYRSTRHIVEAANQVIEPARG 1308

Query: 284  AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                   +   I     R    G             ++ +P  +    + D    +++ +
Sbjct: 1309 RM----KARHPITVDKMRSLDPG---------GGAMARHDPVGQGRVQFLDVAADDTAQA 1355

Query: 344  ILARRIAYTISNM 356
            + A      I+ +
Sbjct: 1356 MAAVEELVRIARL 1368



 Score = 38.7 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 37/314 (11%), Positives = 81/314 (25%), Gaps = 62/314 (19%)

Query: 429  LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            L  +   +   ++                    E   +   +       + + + + +++
Sbjct: 1368 LDPDFSWARCAIISRDWRRLGP------VRAYAEKLGLPVEMANEKLPSLWRLREMQRFV 1421

Query: 489  HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              L               +L      +    +  N  ID++ E +    R        + 
Sbjct: 1422 ASLNRRP---------AAMLTIPDMLELLNEQRSNRWIDLIAEGIADLARELGRKTMPVP 1472

Query: 549  ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            + I  L        +   +    + ++T H +KGLE   V +++ G +  S     +   
Sbjct: 1473 DTIEWLA----EWAQDIRSAQRGLLLLTAHRSKGLEFDHVVILNGGWKTLSQGEDGEAP- 1527

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                                    RL YV MTRA   L +  H 
Sbjct: 1528 ---------------------------------------RRLFYVAMTRARRSLAVVTHG 1548

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                       +  +M+                  +     +   ++   PE +P     
Sbjct: 1549 L---HPFVEADSDCEMLRRVEMPRRLDLPQPDHYQVPDMGVVDLSYAGRLPETSPKLAAI 1605

Query: 729  TIKQLMDEQKIPKK 742
               Q+ D   I ++
Sbjct: 1606 AAAQVEDPVTIERR 1619


>gi|327393379|dbj|BAK10801.1| helicase IV HelD [Pantoea ananatis AJ13355]
          Length = 677

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 81/284 (28%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +         N         L                    L 
Sbjct: 289 LESDAAARRALLIDIWRQQCHEKKAQANGWRQWLRDELAWEVGEGPF------WQDDRLA 342

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+       +          +    +   ++  +             + L   L  
Sbjct: 343 ERLAPRLERWLSLMRMHGGAQAAMIDGVPEALRELFSKR------------IKLMAPLLK 390

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K+   +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 391 AWKSALKEEGAVDFSGLIHQAVAILEK--------GRFISPWKHILVDEFQDISPQRAAL 442

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +   TLFAVGD+ Q+IY F GAE                    + 
Sbjct: 443 LSALRQ--------QNKRTTLFAVGDDWQAIYRFSGAEMSLTTAFHHYF--------GEG 486

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R    I  V ++      +      +S      +S
Sbjct: 487 DRCVLDTTYRFNDRIGEVANRFIQQNPHQLRKPLNSLVKGNKKS 530



 Score = 43.0 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 57/377 (15%), Positives = 110/377 (29%), Gaps = 45/377 (11%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS---ASILARRIAYTISNMIG----TD 360
           + +W Q   +  +Q N  ++           E        LA R+A  +   +       
Sbjct: 301 IDIWRQQCHEKKAQANGWRQWLRDELAWEVGEGPFWQDDRLAERLAPRLERWLSLMRMHG 360

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
              +     V +A   L   R +   PL+      LK +  +   G     +      + 
Sbjct: 361 GAQAAMIDGVPEALRELFSKRIKLMAPLLKAWKSALKEEGAVDFSGLIHQAVAILEKGRF 420

Query: 421 LMALGRFILSQEDDLSFVCM-LKSPLF-----------NFSEDDIFKICTQRHETETVYE 468
           +      ++ +  D+S     L S L                  I++         T + 
Sbjct: 421 ISPWKHILVDEFQDISPQRAALLSALRQQNKRTTLFAVGDDWQAIYRFSGAEMSLTTAFH 480

Query: 469 YIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +   +   C +         I E+ +     +PH     +    KG ++ I+       D
Sbjct: 481 HYFGEGDRCVLDTTYRFNDRIGEVANRFIQQNPHQLRKPLNSLVKGNKKSIALLP---QD 537

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L+  LN      +     L        +     K         +  +T+H +KG ++  
Sbjct: 538 QLEPLLNKLSGYAKPHERVLILARYHYLRPDVLDKAKTRWPKLNIDFLTIHASKGQQADY 597

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V L+                               P ++  + I   L+   +     E 
Sbjct: 598 VILLGLQQGK----------------------EGFPAAQRESIIEEGLLPQPEAFPDAEE 635

Query: 648 NRLLYVGMTRASDQLII 664
            RL YV +TRA  Q+ +
Sbjct: 636 RRLAYVALTRARQQVWL 652


>gi|238795895|ref|ZP_04639408.1| Helicase IV (75 kDa helicase) [Yersinia mollaretii ATCC 43969]
 gi|238720358|gb|EEQ12161.1| Helicase IV (75 kDa helicase) [Yersinia mollaretii ATCC 43969]
          Length = 684

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 36/203 (17%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            E ++++ +E   +  +             + L   L   ++ A K+   +DF  LI   
Sbjct: 371 AEMIEQADEEVRDLFQKR------------IRLMAPLLKAWKTALKEEGAVDFAGLIHQA 418

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +LL+K         +      HIL+DE QD S  +  ++ +L +         +    L
Sbjct: 419 VNLLEK--------GRFVSPWKHILVDEFQDISPQRAMLLSALRK--------QNKQTCL 462

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           FAVGD+ Q+IY F GAE        +   + A           L  ++R    I  + ++
Sbjct: 463 FAVGDDWQAIYRFSGAELSLTTAFSQNFGQGAE--------CALDTTYRFNDRIGEIANQ 514

Query: 277 VFSIPENAQGLSEDSTTTIRHRS 299
                        +S +    +S
Sbjct: 515 FIQQNPYQLKKPLNSLSKGNKKS 537



 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 115/377 (30%), Gaps = 45/377 (11%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTISNMIGTDTIFS 364
           +Q W+Q  S+  +Q    +E  T   +    +        L  R+A  +   +G   +  
Sbjct: 308 IQHWQQQCSEKKTQAKGWREWLTDELEWEVDDGDFWQDKRLVARLAGRLERWLGLMRMHG 367

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKD 420
             +  +I+  D  V    +K   L+  L +     LK +  +   G     +      + 
Sbjct: 368 GSQAEMIEQADEEVRDLFQKRIRLMAPLLKAWKTALKEEGAVDFAGLIHQAVNLLEKGRF 427

Query: 421 LMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETETVYEYI 470
           +      ++ +  D+S    +          ++ LF   +D          E      + 
Sbjct: 428 VSPWKHILVDEFQDISPQRAMLLSALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFS 487

Query: 471 QKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           Q F                 I E+ +     +P+     +    KG ++ +    NE   
Sbjct: 488 QNFGQGAECALDTTYRFNDRIGEIANQFIQQNPYQLKKPLNSLSKGNKKSVMILPNEQ-- 545

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L+  L+      +     L        +     K A       +  MT+H +KG ++  
Sbjct: 546 -LEALLDKLSSFVKGDERILILARYHHLRPDILQKAATRWPKLTIDFMTIHASKGQQADY 604

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V +                          G P    +S   + ++             E 
Sbjct: 605 VIIAGLHEGS------------------DGFPAVARESILEDVLLPAPEDFPDA----EE 642

Query: 648 NRLLYVGMTRASDQLII 664
            RLLYV MTRA  Q+ +
Sbjct: 643 RRLLYVAMTRAKHQVWL 659


>gi|331651986|ref|ZP_08353005.1| helicase IV (75 kDa helicase) [Escherichia coli M718]
 gi|331050264|gb|EGI22322.1| helicase IV (75 kDa helicase) [Escherichia coli M718]
          Length = 715

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 105/325 (32%), Gaps = 32/325 (9%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
           P+     +D      L +        +K    +   Q    E ++S+    F   +   +
Sbjct: 322 PIVSKLENDTAARHELFIAEWGKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQR 381

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           +         +   L      +Q E I            K     + L   L   ++ A 
Sbjct: 382 R---LASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR----IKLMAPLLKAWKGAL 434

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    +DF  LI     +L+K         +      HIL+DE QD S  +  ++ +L +
Sbjct: 435 KAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAALLAALRK 486

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +S  TLFAVGD+ Q+IY F GA+                    +    +L 
Sbjct: 487 --------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEGERCDLD 530

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQVVSQHDS 320
            ++R  + I  V ++             +S T    ++  +     +  L +++      
Sbjct: 531 TTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKLSGYAKP 590

Query: 321 QCNPQQESWTSYFDSLPQESSASIL 345
           +      +   +      E +A+  
Sbjct: 591 EERILILARYHHMRPASLEKAATRW 615



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWGKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|325288281|ref|YP_004264462.1| UvrD/REP helicase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963682|gb|ADY54461.1| UvrD/REP helicase [Syntrophobotulus glycolicus DSM 8271]
          Length = 595

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/545 (13%), Positives = 155/545 (28%), Gaps = 129/545 (23%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +   +N  +DF+ ++  +  +L+   +++     I   I  + +DE QDT+ +
Sbjct: 163 QVVKGYHDLLIQNKEIDFDLILSLSYQILRNHPIASV---NIAGIIRSVCVDEYQDTNEL 219

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++I  LT+         ++   +  VGD  Q+IY+  G   K +   + I   R    
Sbjct: 220 QYQIIGILTKT--------NNRIKVMFVGDTDQAIYTSLGGIAKSIKEIEEITALRF--- 268

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
               +   L   +RST  ++                 +  +  I   ++     G + L 
Sbjct: 269 ----TRETLNGCYRSTQRVID-----------YYSYFQKESYKIISLATHAELKGIIYLN 313

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +                                  I   I+ +I           + +
Sbjct: 314 TSIHKDD------------------------------IYDCIAELIRH------KIDQNV 337

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             ++I V+  +      ++   R L  D              D   I  + A        
Sbjct: 338 LPEEICVIAPQWFLLYPLSRKLRELLPDIS-----------FDAPDISPIKA-------- 378

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
           +D   F  + +       +    +        + + E      N  I  F  +++ I+ +
Sbjct: 379 DDMNVFYKLARLIFTEPGKKVPRRKRIATEIIKVLSEEYNILLNEHIDCFW-ILQKINSI 437

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
              A      D++  ++          S  G    D      +     +     + + + 
Sbjct: 438 HPNAGNG--VDYYKHVIEE------LFSSCGINREDN-SSLYSL---YDNFIGKTEERIK 485

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
                   +           V I T H  KG E   V        +  H       ++  
Sbjct: 486 RHSLSDDLSAFYKMFREKTGVVITTCHKIKGEEYNTVIAFGIFYGMIPHWDSIFSPVISE 545

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           +N                                E  ++LYV  +RA + L +      +
Sbjct: 546 VN--------------------------------EAKKMLYVIASRAKESLYLFAEQGRT 573

Query: 672 NEKKS 676
               +
Sbjct: 574 TSNGA 578


>gi|281424647|ref|ZP_06255560.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
 gi|281401235|gb|EFB32066.1| putative ATP-dependent DNA helicase [Prevotella oris F0302]
          Length = 906

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/377 (13%), Positives = 111/377 (29%), Gaps = 73/377 (19%)

Query: 90  NKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF 149
            +  P     +          RD  +     +   A L   + L   YE  K  N ++DF
Sbjct: 179 AQNEPFTAAMMIDIYKHADTYRDACSDLGEQQLIYALLKKMQ-LAHQYERYKSDNRLMDF 237

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           ED+++ +                       I +DEVQD + +Q  +I +LT +    +  
Sbjct: 238 EDILLLSYA-----------HRDELPRYRWIQVDEVQDLNPLQLALIDALTANDEGQEG- 285

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 +  +GD +QSI+SF GA+   +   +               I  L  + RS   
Sbjct: 286 -----CVVYLGDPQQSIFSFMGAKYSTLEFLRNR---------CAGHIHSLAQNHRSPKY 331

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           +L + +   +                             +L         +  N  Q   
Sbjct: 332 LLDLFNTYAAQ----------------------ELGIAAELLPSTSYYPTTIGNELQLFQ 369

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
           +   D+   +++   +                      +R        ++V   +D   +
Sbjct: 370 SDTIDTEYLDAAQQAV--------------------RLQRDFPNDTTAIIVNSNRDADGV 409

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
           +   + L+  +           L     IK L A    + +  + +++  +L+      +
Sbjct: 410 SDALKQLRTSH----FKVSGEDLFTSPQIKLLFAHLTVMNNPHNFIAWARILQGMQVFRT 465

Query: 450 EDDIFKICTQRHETETV 466
                +      +   +
Sbjct: 466 PTAARRFVRACSDRALL 482



 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 54/389 (13%), Positives = 109/389 (28%), Gaps = 61/389 (15%)

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTV--QLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +  +   G     +    H  S       +   +   +  + +    P++E+   + D 
Sbjct: 527 IAAVKVRNGAVVPGSALSLHLESDREIPEMLGDIVNPIIEERRNQTLLPRREALQRFVDY 586

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                     A    + ++N +  +   +     +    D L L+R      L+    R 
Sbjct: 587 ARGTVLLGHNADYDIHILANNLRREMPETALPNELSDYFDSLHLIR------LLRPGLRQ 640

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            K  Y + V+  +      HLA  D+ A    +    D    V   +            +
Sbjct: 641 YKLKYLLEVLHLEGEN--SHLADADVNATQSLVAFCYDKAKEVVGEQQAFIGHKRVQ-ER 697

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           I T R+     Y +  +       K   +++ +  L          +     L       
Sbjct: 698 IITLRNNYLPHYRHTVERLWKEDEKSGVLVEEMRHL----YATWVEENLIQPLPTVDYIF 753

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           +++        D+L E               +   I E+           +   +++ + 
Sbjct: 754 RYV------ASDLLRE------DESTALVMQIGRHILEMNTLKEADLCGSTTIDDKIFVT 801

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH AKGLE   V + D     + +                                   
Sbjct: 802 TVHKAKGLEFDNVIVFDVIEGRYPN----------------------------------Y 827

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                 +   E  R  YV MTR+  +L++
Sbjct: 828 YSQQNPAQVAEDARKFYVAMTRSKKRLMV 856


>gi|145225238|ref|YP_001135916.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK]
 gi|145217724|gb|ABP47128.1| ATP-dependent DNA helicase, Rep family [Mycobacterium gilvum
           PYR-GCK]
          Length = 707

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 93/343 (27%), Gaps = 71/343 (20%)

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           +    +  +        ++DE QD + +Q  V+ +   +             L  VGD  
Sbjct: 218 ENDPAVAQEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGN----------RDDLTVVGDAN 267

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IYSF GA P+ +L   R   +         +++ L   +RST  ++++ ++V +    
Sbjct: 268 QTIYSFTGASPRYLLDFSRRFPE--------VTLVRLERDYRSTPQVVSLANRVIAGARG 319

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                   + L  Q     +       +                
Sbjct: 320 RM------------------AGSRLHLVGQRPPGPEPVFKEYPDEVAEAAAVA------- 354

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                   +I  +I + T           A +I VL R    + +             ++
Sbjct: 355 -------KSIRTLIESGTA----------ASEIAVLYRINAQSEVYEEALTE----AGVA 393

Query: 404 VVGNDRFILTDHLAIKD-LMALGRFILSQEDD-----LSFVCMLKSPLFNFSEDDIFKIC 457
                         I+  L+AL R       D        V  +  PL   + +      
Sbjct: 394 FQVRGGEGFFSRQEIRQALLALQRVAERGAGDTGGSLPEIVRAILEPL-GLTAEPPAGTR 452

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            +      V                 +   + EL   A    P
Sbjct: 453 ARDRWEALVALAELVDDEVAQRPHLDLRALLTELRQRADSRHP 495



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 65/232 (28%), Gaps = 48/232 (20%)

Query: 482 QHVIKYIHELIHIAQFC------SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
           Q + + +  L  +A+        S  +    IL       +  +  G    D  +  +  
Sbjct: 406 QEIRQALLALQRVAERGAGDTGGSLPEIVRAILEPLGLTAEPPA--GTRARDRWEALVAL 463

Query: 536 TL----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                    Q  +  L+ L++EL Q   +           V + ++H AKGLE   V+LV
Sbjct: 464 AELVDDEVAQRPHLDLRALLTELRQRADSRHPPVVQG---VTLASLHAAKGLEWDAVYLV 520

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                     H                                          EE  RLL
Sbjct: 521 GLADGTLPISHALSHGP-------------------------------DSEPVEEERRLL 549

Query: 652 YVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           YVG+TRA   L +           +      +   +      D+   + +  
Sbjct: 550 YVGVTRARVHLTLSWALARKPGGRQGRRPSRFLTGIAPQSQRDDGPSRSRKP 601


>gi|50120689|ref|YP_049856.1| DNA helicase IV [Pectobacterium atrosepticum SCRI1043]
 gi|49611215|emb|CAG74661.1| helicase IV [Pectobacterium atrosepticum SCRI1043]
          Length = 685

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   +++A K    +DF  LI    +LL K         +      HIL+DE Q
Sbjct: 389 IRLMAPLLKAWKKALKDENAVDFSGLIHQAVNLLDK--------GRFVSPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L           +S   LFAVGD+ Q+IY F GAE       ++    
Sbjct: 441 DISPQRASLLAALRR--------QNSRTCLFAVGDDWQAIYRFSGAELALTTAFEQHF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                        L  ++R    I  + +              +S +    ++
Sbjct: 491 ------GVGEQCALDTTYRFNERIGEIANTFIQQNPYQLKKPLNSLSKGDKKA 537



 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 115/387 (29%), Gaps = 49/387 (12%)

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS-------ILARRIAYTIS 354
                  +L      Q  ++   Q   W  +     +             LA R+A  + 
Sbjct: 298 SDAKQRRELLISHWQQQCAEKKTQANGWRRWLTEELEWDVPEGDFWNDPKLASRLAGRLE 357

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLV----RKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +G   +    +  +++     +      R R   PL+    + LK++  +   G    
Sbjct: 358 RWLGLMRMHGGSQSEMVEQAPESIQTEFQQRIRLMAPLLKAWKKALKDENAVDFSGLIHQ 417

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQR 460
            +      + +      ++ +  D+S               ++ LF   +D         
Sbjct: 418 AVNLLDKGRFVSPWKHILVDEFQDISPQRASLLAALRRQNSRTCLFAVGDDWQAIYRFSG 477

Query: 461 HETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
            E      + Q F               + I E+ +     +P+     +    KG ++ 
Sbjct: 478 AELALTTAFEQHFGVGEQCALDTTYRFNERIGEIANTFIQQNPYQLKKPLNSLSKGDKKA 537

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
           ++       D L+  L+      ++    L        +     K A    + ++  MTV
Sbjct: 538 VTILP---QDQLEPLLDKLSGFVKDDERILVLARYHHLRPAILEKAATKWPNLQIDFMTV 594

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KG ++  V +V                               P     + I + L+ 
Sbjct: 595 HASKGQQAEYVIIVGMHEGK----------------------DGFPAPARESVIEAVLLP 632

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLII 664
             +     E  RLLYV +TRA  ++ +
Sbjct: 633 EPEDFPDAEERRLLYVALTRAKHRVWL 659


>gi|183221749|ref|YP_001839745.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911824|ref|YP_001963379.1| DNA helicase-like protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167776500|gb|ABZ94801.1| DNA helicase-related protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780171|gb|ABZ98469.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 427

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 69/190 (36%), Gaps = 29/190 (15%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
             + +   K+KN   +F+DLI N  + L     S      I ++   ++IDE QDT  IQ
Sbjct: 150 FRSSFHHWKEKNHYFEFDDLIQNFLEFLHSNHSSL-----IKKKWKSLIIDEFQDTDEIQ 204

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            E+I+ +  D             +  VGD+ Q+IY F GA PK  L              
Sbjct: 205 LEIIKQMEFD------------RITVVGDDWQAIYGFRGATPKPFLEFPIHFPNAVQ--- 249

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR----HRSSRIGQVGTV 308
                 +L  ++RST  I+          +        S    +       S   +    
Sbjct: 250 -----FKLSTNYRSTHKIIQKSLLPIHQNKEKIPKQTISHRHEKGFFHLERSFKKEPQLK 304

Query: 309 QLWEQVVSQH 318
            LW+Q  S  
Sbjct: 305 SLWKQFQSLD 314


>gi|167035149|ref|YP_001670380.1| UvrD/REP helicase [Pseudomonas putida GB-1]
 gi|166861637|gb|ABZ00045.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 545

 Score =   99 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 90/546 (16%), Positives = 157/546 (28%), Gaps = 156/546 (28%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              YE   K++    F  L   T    K  + S   R  I      + IDE QDTS  Q 
Sbjct: 139 YDLYESEFKEHYQKGFILLEAATIIACKIIEKSEACRRYIKARYRSVYIDEYQDTSEPQH 198

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +  +L                  AVGD +QSI++F G++P  +L               
Sbjct: 199 TLFCALYSLGLKA----------VAVGDTQQSIFAFRGSDPTYLLALTAD--------AS 240

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
            F    + ++ RS   I+   +++F+                                + 
Sbjct: 241 NFEHHVININHRSHPSIINYANRLFAPQ-----------------------------CQL 271

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           +  + +      +    +  D     +     A R+   I ++                 
Sbjct: 272 LPVEENDVQVYHRRFNGTQEDVASTLNEWIEKAARV-LKIEDL----------------- 313

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            ++ +LVR       I  L R L            RF                     +D
Sbjct: 314 SEVAILVRWNNS---IERLQRNLTLPA--------RFY--------------------KD 342

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D     +  SPL  F    ++    +R   E + E          +K + + K IH+L +
Sbjct: 343 DPLSQTV--SPLGRFFSALLYFYFDKRKLVEKILE-DFPLLRTTPAKLRALRKSIHDLRN 399

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
           +     P  F                             +  + R   ++ + L  L   
Sbjct: 400 LQPASLPPAFLE---------------------------IAHSFRFPTDNQAELGALEKT 432

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +      +    SA   E++IMT+H +KGLE  +V  +D    VF  +            
Sbjct: 433 ISSPEEILHYE-SARPGEIQIMTLHKSKGLEFDLVVHLDLYDWVFPTRKYTGNFDEKVFP 491

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           D                                   L +VG+TRA    ++   +   N 
Sbjct: 492 DWDQ-----------------------------DLNLHFVGITRARKWCVLVTSTQRINS 522

Query: 674 KKSNQR 679
           + + + 
Sbjct: 523 ENNTKN 528


>gi|254821918|ref|ZP_05226919.1| hypothetical protein MintA_18442 [Mycobacterium intracellulare ATCC
           13950]
          Length = 400

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 90/303 (29%), Gaps = 30/303 (9%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           +++R           +           V       + S+      +L      +  S+T+
Sbjct: 102 VRSRLARLAGVGLGPVGDAAAEPEGAPVISTYHAFAGSLLRDYGLLLPVEPDTRLLSETE 161

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK---------SQDEFIKIR 111
             +  F +++ +            +T  + +    L E L             +  +   
Sbjct: 162 LWQLAFDVVNGYRGELHTDKTPAAVTSMVLRLWGQLAEHLVDTGQLRDTHVELERLVHGL 221

Query: 112 DRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                 +    +   L L            L    +E  +   V+DF   + +   L   
Sbjct: 222 PAGPYQRERGPSQWLLRLLGTQTERAELVPLLDALDERMRAEKVMDFGMQMASAARLAAG 281

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +   +      +L+DE QDT   Q   + +L                L AVGD 
Sbjct: 282 FP---QVGEDLRARYRVVLLDEYQDTGHAQRIALSALFG------GGVDDGLALTAVGDP 332

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + GA    + R      +   + G    ++EL  S+R+    L V + V +   
Sbjct: 333 IQSIYGWRGASATNLPRFTTDFPR---SDGTPAPVLELRTSWRNPPRTLRVANAVSAEAR 389

Query: 283 NAQ 285
              
Sbjct: 390 RRS 392


>gi|197302902|ref|ZP_03167953.1| hypothetical protein RUMLAC_01630 [Ruminococcus lactaris ATCC
           29176]
 gi|197297983|gb|EDY32532.1| hypothetical protein RUMLAC_01630 [Ruminococcus lactaris ATCC
           29176]
          Length = 1125

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 74/675 (10%), Positives = 193/675 (28%), Gaps = 112/675 (16%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +    AR +A +I  ++           +  + +DI V+     D  L         
Sbjct: 321 ETKNPREEARYVAESIRKLVRE---------KDYRYRDIAVIA---ADLNLYADALEKAC 368

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
             ++I V  + +  +  +  ++ L +L           S    L++ L  F++++I ++ 
Sbjct: 369 ELFEIPVFMDHKKSILLNSFVEYLRSLLAMAEQNFTYESVFRHLRTGLCGFTDEEIDRLE 428

Query: 458 TQR-----HETETVYEYIQKFANCGISKFQHVIKYIHELI-------------------- 492
                      +   +   +       K    + ++  +                     
Sbjct: 429 NYCLALDIKGYKKWQQAWVRRTPSTGEKELEELNHLRVIFVEKTMGLIQVLKQKKKTVRD 488

Query: 493 ------HIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
                             T +    + R +  +++   +V  ++ E  +  +        
Sbjct: 489 VTQAVYEYLVQEKLQQKITQLEKKFQDRGELALAKEYAQVYRIVMELFDKFVSLLGEEEI 548

Query: 546 SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +L++    L+      K        ++V I  V   +      +F V     +       
Sbjct: 549 ALKDYCELLDAGLEEAKVGVIPPSLDQVMIGDVERTRIKNIKALFFVGANDTLLPGNTGV 608

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
              +     +         +          +               LY+ +T+ +  L +
Sbjct: 609 GGLLS----ECDREQFQKKEISLSPGAKEKIYIQKFY---------LYLNLTKPTKFLFL 655

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK-----------------LTNSINKD 707
                +   K          +   F + + V + +                       K+
Sbjct: 656 SWAKASGEGKSLRPSYLIQELMRLFPDLKPVDEEEKSWQQCEMTRRTGILRLAEGLREKE 715

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
           + +  +W   +      E+  ++ + +      KK    + + + E   L+P  +     
Sbjct: 716 QGLDAQWKELYTWFAGDEKSRSVVEKLLRAGFYKKEAGMLGSQMAEKLYLDPERVSVTRL 775

Query: 768 TNL----------------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
                              +      +  + G I H+ L+      E ++ +++T    +
Sbjct: 776 EKFASCAYAHFLSYGLRLSDRETYGFEAMDLGNIAHQALERFARKAEEEKLDWVTMPEER 835

Query: 812 NAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEVSVSGKINCPKKDII 863
             +L       ++L     +L +          +   +    ++      + +       
Sbjct: 836 RTELIDESVESSVLDYGNTVLFSSARNEYMIYRIKRLIRRSVWALTRQMEQGDFKPAGYE 895

Query: 864 I---SGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYE-KILK--- 912
               SG+ID+I     +  ++  + +YKT   V  +I    +    QL +Y    L+   
Sbjct: 896 FKFGSGKIDRIDTCEDENRVYVKVTDYKTGRKVF-DITSFYHGLQLQLPVYLNAALEAEG 954

Query: 913 DSYPNKSLV-CLLIY 926
             YP K +V   + Y
Sbjct: 955 KRYPGKEIVPAGIFY 969


>gi|77464192|ref|YP_353696.1| DNA helicase [Rhodobacter sphaeroides 2.4.1]
 gi|77388610|gb|ABA79795.1| Possible DNA helicase [Rhodobacter sphaeroides 2.4.1]
          Length = 1715

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/446 (13%), Positives = 140/446 (31%), Gaps = 44/446 (9%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +    + L+E Y  + ++ +   +     +     L  +T      +  + L    Q + 
Sbjct: 1050 RIEEAVRLSEDYFALDQESFLRRWMPGRGVE----LRRQTTGKAWKQIVEDLGNPVQQEI 1105

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            + +     +   L    + +  ++   +++ +  L+ K +  +   +   +R    ++  
Sbjct: 1106 VADDREETNVLVLAGPGSGKTRVL---VHRIAYLLRVKREDPRGILVLSYNRHAAAEIRA 1162

Query: 122  STLAS-------------LTLAKYLN-AHYEEAKKKNCVLDFEDLIINTNDLLKKRD--- 164
                                LA  L  A +     +    DF+D++      +       
Sbjct: 1163 RLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQH--DFQDVLREAVRQINGEGLSR 1220

Query: 165  -VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              +   R  + Q    IL+DE QD    ++++I ++        +      +LFAVGD+ 
Sbjct: 1221 TEAEAQREALIQGYRWILVDEYQDIGREEYDLIAAVAGRSLEDPDQR---LSLFAVGDDD 1277

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS---- 279
            Q+IY+F+GA    + R +   + R            L  ++RST  I+   ++V      
Sbjct: 1278 QNIYAFNGASVSYIRRFEEDYRARPK---------FLTENYRSTRHIVEAANQVIEPARG 1328

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
              +    ++ D   ++      + +   V           +    Q  +       + + 
Sbjct: 1329 RMKARHPITVDKMRSLYPGGGAMARHDPVGQGRVQFLDVAADDTAQAMAAVEELVRIARL 1388

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                  AR  A    +      + +  +K  +  +     +        +      L   
Sbjct: 1389 DPDFSWAR-CAIISRDWRRLGPVRAYAEKLGLPVEMANEKLPSLWRLREMQRFVASLNRR 1447

Query: 400  YKISVVGNDRFILTDHLAIKDLMALG 425
                +   D   L +       + L 
Sbjct: 1448 PAAMLTIPDMLELLNEQRSNRWIDLI 1473


>gi|315445535|ref|YP_004078414.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
 gi|315263838|gb|ADU00580.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1]
          Length = 707

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 93/343 (27%), Gaps = 71/343 (20%)

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           +    +  +        ++DE QD + +Q  V+ +   +             L  VGD  
Sbjct: 218 ENDPAVAQEFRDRYRCFVVDEYQDVTPLQQRVLDAWLGN----------RDDLTVVGDAN 267

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IYSF GA P+ +L   R   +         +++ L   +RST  ++++ ++V +    
Sbjct: 268 QTIYSFTGASPRYLLDFSRRFPE--------VTLVRLERDYRSTPQVVSLANRVIAGARG 319

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                   + L  Q     +       +                
Sbjct: 320 RM------------------AGSRLHLVGQRPPGPEPVFKEYPDEVAEAAAVA------- 354

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                   +I  +I + T           A +I VL R    + +             ++
Sbjct: 355 -------KSIRTLIESGTA----------ASEIAVLYRINAQSEVYEEALTE----AGVA 393

Query: 404 VVGNDRFILTDHLAIKD-LMALGRFILSQEDD-----LSFVCMLKSPLFNFSEDDIFKIC 457
                         I+  L+AL R       D        V  +  PL   + +      
Sbjct: 394 FQVRGGEGFFSRQEIRQALLALQRVAERGAGDTGGSLPEIVRAILEPL-GLTAEPPAGTR 452

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            +      V                 +   + EL   A    P
Sbjct: 453 ARDRWEALVALAELVDDEVAQRPHLDLRALLTELRQRADSRHP 495



 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 65/232 (28%), Gaps = 48/232 (20%)

Query: 482 QHVIKYIHELIHIAQFC------SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
           Q + + +  L  +A+        S  +    IL       +  +  G    D  +  +  
Sbjct: 406 QEIRQALLALQRVAERGAGDTGGSLPEIVRAILEPLGLTAEPPA--GTRARDRWEALVAL 463

Query: 536 TL----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                    Q  +  L+ L++EL Q   +           V + ++H AKGLE   V+LV
Sbjct: 464 AELVDDEVAQRPHLDLRALLTELRQRADSRHPPVVQG---VTLASLHAAKGLEWDAVYLV 520

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                     H                                          EE  RLL
Sbjct: 521 GLADGTLPISHALSHGP-------------------------------DSEPVEEERRLL 549

Query: 652 YVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
           YVG+TRA   L +           +      +   +      D+   + +  
Sbjct: 550 YVGVTRARVHLTLSWALARKPGGRQGRRPSRFLTGIAPQSQRDDGPSRSRKP 601


>gi|289628785|ref|ZP_06461739.1| UvrD/REP helicase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330870252|gb|EGH04961.1| UvrD/REP helicase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 599

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 74/553 (13%), Positives = 142/553 (25%), Gaps = 140/553 (25%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  +    +DFE ++     L++     + +   I      +L+DE Q
Sbjct: 158 HEAIGGVLQAYWKELRAERQVDFELILFYAYQLIENYPSISMLLGSI---FECVLLDEFQ 214

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT  IQ+ ++ S+ +    G +        F VGD  Q+IY   G               
Sbjct: 215 DTREIQYAILASILKASKDGTSA-------FVVGDPNQAIYGSLGGYAITAADF------ 261

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
             T  G  F  +EL  ++RS++ I++     F                            
Sbjct: 262 -GTQCGIAFKEMELSDNYRSSSRIVSY----FGN-------------------------- 290

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS-ASILARRIAYTISNMIGTDTIFSN 365
               +  + S+ +S    +  +    FD      +    L R I + +  +         
Sbjct: 291 ----YNVLPSKIESVGKDKDYASVVSFDHQTHRDALEEELVRLIKFNVETL--------- 337

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL--TDHLAIKDLMA 423
                I   ++ ++         +T                 D   +             
Sbjct: 338 ----GIAQHEVCIVAPWWVHLASMTRRLVAAL-----PAYSFDGPGMVPFARDVDNFWYK 388

Query: 424 LGRFI---LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           L R I    S +  +  +      + + S+  +      R         I      G++ 
Sbjct: 389 LARIILTEASPQLYVRRMRWAGEVIADLSDAGVEFPGLDRKTLLRACNAITITETDGLAF 448

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +     +          +            +  Q+ I +   E  + + E         
Sbjct: 449 LRTFFDQLCSTFG-IDRHTYAALQEHHDAFFECSQKRIDKLIKEGAEAIAEL-------- 499

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                               + R   A+   V + T+H  KG E   V        +  H
Sbjct: 500 -------------------GMFRKVFADRTGVTVSTIHGVKGAEYDAVIAYGLLEGMVPH 540

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                       E  N+L+YV  +RA  
Sbjct: 541 FSDPN-------------------------------------QAETANKLMYVVSSRARK 563

Query: 661 QLIICKHSNTSNE 673
            L +      S  
Sbjct: 564 NLHLISERGRSRG 576


>gi|282849709|ref|ZP_06259093.1| putative ATP-dependent nuclease subunit B [Veillonella parvula ATCC
           17745]
 gi|282580646|gb|EFB86045.1| putative ATP-dependent nuclease subunit B [Veillonella parvula ATCC
           17745]
          Length = 1164

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 111/966 (11%), Positives = 241/966 (24%), Gaps = 218/966 (22%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIR------DRFNTYKMFKSTLASLTLAKYL 133
            QK +   E   K P+    L++   EF   R      +R             L      
Sbjct: 104 KQKELGLLEQATKRPEFSSVLQQLFSEFRAFRVGPADLERGAETVKNNVLQKKLRELAIC 163

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            + YEE   ++   D  D I+   + L +  +            +H+ ID     +   +
Sbjct: 164 MSAYEEELSRHGERD-IDPIMEIVEALPQSPLMEN---------SHVFIDGFHWFTPTHY 213

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+I +L +       T   P         K               R + +  +       
Sbjct: 214 ELIYTLFDLAKEAVITIDLPMA------PKA---------LNLAHRGEHLFSRPLEIYDT 258

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
             +     +++                                  ++             
Sbjct: 259 LVARYGSSINW------------------VGFDGKRGPQIVQELEANYFASPS------- 293

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                     P    +                A  +A  I   I +         +  + 
Sbjct: 294 -KKNTTDATIPLIRGYN-----------REREADAVARRILAYIES--------SKEARY 333

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           +D+ +++R   ++         +   Y I    + +  + +H   + L AL   +     
Sbjct: 334 RDVCIMLR---ESETYGDTLEKVFARYGIPHFIDRQRPMKNHPLGELLSALFDIVRHNYS 390

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH---------- 483
             S   +LK+ L   S + + ++     E    +   ++ +   +  F            
Sbjct: 391 RDSMFLLLKTDLMPLSREAVDELENYVLEFGIDHYKWERESWPYLRGFHEGQDEESHVDA 450

Query: 484 ------------VIKYIHELIHIAQFCSPHDFFTL------ILGAKKGRQQFISR----- 520
                       ++  +      A     H           +L   +  ++         
Sbjct: 451 PRRARVNKARQTIMDILSPWFDFAANAEGHTGAEWGTQLYGLLEILQVPERLYEWAKDAE 510

Query: 521 --FGNEVIDVLDEFLNFTLRN-------EQNSYSSLQELISELEQYPPTIKRAHSANH-N 570
                E     ++  N  L          ++   +L E++  LE+    +  +      +
Sbjct: 511 TIGDQESKASHEQMYNAVLSFIDEISMVMKDEILTLDEMMLLLEEGLSDVNYSMIPPSLD 570

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V I T+        P VF++     VF                     I   + +   +
Sbjct: 571 HVVITTIERGYSQWWPKVFVMGLNQGVFPQSM------------GDEGLIKDKERQELAD 618

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
               L +        E   LLY+ MTRASD L +    +  +            +    +
Sbjct: 619 AGITLAEGALPKAFNENF-LLYLAMTRASDSLTLSYAGSGEDGTGLEPSLVAKRLESLGY 677

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
            D+    + +  SI  D    Y W      +   ER   +    +   +   L++  +  
Sbjct: 678 IDQ---VVDIPLSIAPDTEADYVWRPLQSLSLLSERWGALFSGYEVNPLWWGLYNWARES 734

Query: 751 INEPYIL---------------------------------NPSTIDTKGKTNL------- 770
                 L                                 + + ++   +          
Sbjct: 735 ETYRPRLAEVSRGIRDNNDVPVITQDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYAQYG 794

Query: 771 ----ESLLSDNQTFNRGLIIHKLLQVIF-----------TLPEHKRK----NFITSYCTK 811
                  +        G  +H  L+ +             L E +++            +
Sbjct: 795 LKLEPRPVRSFGAPEIGTFLHANLERLGNYLLENNKQWRDLDEEEQENLCRTVADEILQE 854

Query: 812 N--AKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCP--------- 858
           N   +       K +   + R L      +        +    +                
Sbjct: 855 NQLGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKRSDFDTKYLEQDFGRQGGWDPIRVS 914

Query: 859 -KKDIIIS--GRIDQISIS--QQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
             +D  +   G+ID+I         +  + +YK+        + + Y    QL  Y   L
Sbjct: 915 LGEDRYLRLIGQIDRIDEYTRDDQTYGMVIDYKSG-GAHVTAQDVYYGLKLQLMTYLLAL 973

Query: 912 KDSYPN 917
           + +Y  
Sbjct: 974 ESAYGK 979


>gi|261866840|ref|YP_003254762.1| helicase IV [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412172|gb|ACX81543.1| helicase IV [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 955

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 98/309 (31%), Gaps = 39/309 (12%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSP----DLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
               +         ++ +    I K+S        + ++  + ++ ++  R     +  +
Sbjct: 476 QQFIAIRPKTDKEIREALENSGIFKESKNRYLKCLQAIRTERLDYTQVLKRLQKANVAHA 535

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
              +      ++  Y +   +   +DF+D+I+    L+K    +         +  HIL+
Sbjct: 536 RQYT-DFLMCIHDAYVKKLNEAQEIDFDDMILQATMLIKNGSFTP--------KWKHILV 586

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD S+ + E+++ +                   VGD+ QSIY F G + +   +  +
Sbjct: 587 DEFQDISMARLELLKEIYS--------KGPRPIWTVVGDDWQSIYRFSGGKLEVTTQFGK 638

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           +            ++ +L  ++R    I                    + T +       
Sbjct: 639 MIGSH--------TLSKLEKTYRYNNSIADTAGHFIMQNPEQYKKDVVTHTQVN------ 684

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                V L++  V +   + +         +  + ++   + +A  I      +I     
Sbjct: 685 --DSCVHLYDSYVMKEGKRESNISLKALEIYKQIRKQHPDASIA--ILARYRYLIKEAKD 740

Query: 363 FSNGKKRVI 371
                    
Sbjct: 741 VIKDTNVKF 749



 Score = 45.7 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 29/163 (17%)

Query: 513 GRQQFISRFGNEVIDVLDEF--LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                +     E    L          +   ++  ++      L +    + +       
Sbjct: 691 YDSYVMKEGKRESNISLKALEIYKQIRKQHPDASIAILARYRYLIKEAKDVIKDT----- 745

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V+  T H +KGLE+    L+                               P +   + 
Sbjct: 746 NVKFWTFHGSKGLEADYCILLGFFQGK----------------------TGFPNNNKEDA 783

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           +V  L+  L      E  RL YV +TRA  +  +   +   +E
Sbjct: 784 VVEALLPTLDDYPHSEERRLFYVALTRAKKESYLIADATAPSE 826


>gi|225871677|ref|YP_002753035.1| DNA helicase [Bacillus cereus 03BB102]
 gi|225785475|gb|ACO25693.1| DNA helicase [Bacillus cereus 03BB102]
          Length = 571

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 23/144 (15%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+E   +  +L  +D++  +  L+K+      IR  I  +  + LIDE QDTS +Q 
Sbjct: 182 YMLYKELCWEQGLLSHDDVLYFSYLLIKRN---KKIREIIRAKFPYFLIDEFQDTSPLQV 238

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +I+ L +              +  +GD  QSI+SF GA      +             +
Sbjct: 239 AIIKLLAK----------KEMVVGVIGDPCQSIFSFQGANVSTFSQFY----------LE 278

Query: 254 KFSIIELPLSFRSTADILTVVDKV 277
             S+  L  + RST  I++V++ V
Sbjct: 279 NMSLYVLENNHRSTEQIISVLNYV 302


>gi|297202231|ref|ZP_06919628.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
 gi|297148067|gb|EDY54286.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
          Length = 625

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 26/279 (9%), Positives = 63/279 (22%), Gaps = 31/279 (11%)

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
           D                       +             +   + +    +L+  ++    
Sbjct: 345 DRPAVPHQATAPEPPTTRARPHPAERATLSPEEARAIASWDRDLDALTGELLRAREAVTD 404

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
           +  P     ++   L         +              +G   H  ++           
Sbjct: 405 VPLPASLTASQVLRLAADPDGLAQELARPMPRPPQPAARQGTRFHAWVE----------- 453

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPK 859
                +      +   ++       I    +   +  A         +   +        
Sbjct: 454 ---ARFEALTLPMLEPEDLPGSDAEIADERDLEALKDAFERTEYAHRTPYCLETPFQLAI 510

Query: 860 KDIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS- 914
              ++ GRID +            I ++KT      +          QL++Y     +  
Sbjct: 511 AGRVVRGRIDAVYRQSDGDTTTYEIVDWKTGRTRTADP--------LQLAVYRLAWAERQ 562

Query: 915 -YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
             P +S+    +YV    V          A   + T+ P
Sbjct: 563 GVPVESVTATFLYVRTGDVVRPTNLPDRTALERLLTQEP 601



 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 75/258 (29%), Gaps = 14/258 (5%)

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFT 536
           +F  +   + +L   +      D    +L       +  +          + L  FL+  
Sbjct: 2   RFARLAAELRDLR-RSLADPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDIA 60

Query: 537 LRNEQNS-YSSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                    +SL   +  L            A     N V+++T H +KGLE  VV +  
Sbjct: 61  ASFAAGDNEASLLAFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDVVAVPG 120

Query: 593 TGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
             +  F     ++       ++P         +    S      +    + +K     E 
Sbjct: 121 LVTGTFPSSQGREKWTAQGKVLPHALRGDTETLPDITSWDARG-MKAFHEAMKDHQHTEE 179

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            RL YV  TR    L+   H     +KK    + +             +     +   +D
Sbjct: 180 LRLGYVTFTRPRSLLLGSGHWWGPTQKKPRGPSDFLQALHDHCAAGHGEIEAWADEPAED 239

Query: 708 EWIAYEWSTHHPENTPLE 725
           E      S    +  PL 
Sbjct: 240 EENPALHSRTEDQIWPLP 257


>gi|149366585|ref|ZP_01888619.1| putative helicase IV [Yersinia pestis CA88-4125]
 gi|165924415|ref|ZP_02220247.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165940131|ref|ZP_02228664.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167419681|ref|ZP_02311434.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167467236|ref|ZP_02331940.1| DNA helicase IV [Yersinia pestis FV-1]
 gi|218928586|ref|YP_002346461.1| DNA helicase IV [Yersinia pestis CO92]
 gi|229841415|ref|ZP_04461574.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843525|ref|ZP_04463668.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. India 195]
 gi|115347197|emb|CAL20091.1| putative helicase IV [Yersinia pestis CO92]
 gi|149290959|gb|EDM41034.1| putative helicase IV [Yersinia pestis CA88-4125]
 gi|165911954|gb|EDR30598.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923475|gb|EDR40607.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|166962422|gb|EDR58443.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229689133|gb|EEO81196.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. India 195]
 gi|229697781|gb|EEO87828.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 661

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 98/299 (32%), Gaps = 45/299 (15%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           +K R G+   ++    +     +             L  ++      ++A  +Q   Q  
Sbjct: 261 IKQRLGVDSIQAK-TFHALALHIIQQGSRKTPVISKLESDSQA----RRALLIQHWQQQC 315

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
             ++      +  L  +      +    +        E ++++ DE   +  +       
Sbjct: 316 SEKKAQDKRLAARLASRLERWVGL----MRMYGGSQAEMIEQANDEVRDLFQKR------ 365

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                 + L   L   ++ A K    +DF  LI    +LL+K         +      H+
Sbjct: 366 ------IRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEK--------GRFVSPWKHV 411

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QD S  +  ++ +L +         +    LFAVGD+ Q+IY F GAE       
Sbjct: 412 LVDEFQDISPQRAMLLAALRK--------QNKQTCLFAVGDDWQAIYRFSGAELSLTTAF 463

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                + A           L  ++R    I  + ++             +S +    +S
Sbjct: 464 SEHFGEGAE--------CALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGNKKS 514



 Score = 56.9 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/410 (14%), Positives = 128/410 (31%), Gaps = 42/410 (10%)

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              D++ S  +   G+      T    +  I Q G+ +       + DSQ          
Sbjct: 252 QAADEMNSRIKQRLGVDSIQAKTFHALALHIIQQGSRKTPVISKLESDSQARRALLIQHW 311

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                 +++    LA R+A  +   +G   ++   +  +I+  +  V    +K   L+  
Sbjct: 312 QQQCSEKKAQDKRLAARLASRLERWVGLMRMYGGSQAEMIEQANDEVRDLFQKRIRLMAP 371

Query: 392 LTRF----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML------ 441
           L +     LK++  +   G     +      + +      ++ +  D+S    +      
Sbjct: 372 LLKAWKTALKDEGAVDFSGLIHQAVNLLEKGRFVSPWKHVLVDEFQDISPQRAMLLAALR 431

Query: 442 ----KSPLFNFSEDDIFKICTQRHETE---TVYEYIQKFANCGISKFQHVIKYIHELIHI 494
               ++ LF   +D          E        E+  + A C +         I ++ + 
Sbjct: 432 KQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFSEHFGEGAECALDTTYRFNDRIGDIANR 491

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
               +P+     +    KG ++ +    +E    L+  L+      ++    L       
Sbjct: 492 FIQQNPYQLKKPLNSLSKGNKKSVMILPDEQ---LEALLDKLSGFVKDGERILILARYHH 548

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            +     K A       +  MT+H +KG ++  V +V             +  ++  +  
Sbjct: 549 LRPEVLQKAATRWPKLTIDFMTIHASKGQQADYVIIVGLHEGNDGFPAAARESVLEDVLL 608

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            P                             E  RLLYV +TRA  Q+ +
Sbjct: 609 PPPEDFPD----------------------AEERRLLYVAITRAKHQVWL 636


>gi|41410190|ref|NP_963026.1| hypothetical protein MAP4092c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41399024|gb|AAS06642.1| hypothetical protein MAP_4092c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 619

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/563 (10%), Positives = 135/563 (23%), Gaps = 114/563 (20%)

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           +      T    E  +  A  G +    + + + E    ++       F          +
Sbjct: 1   MVRAAAATMFFGETAETLAAGGDALTDRIAQTLREWAGHSRERGVAAIFEAAQLLGMSNR 60

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY------PPTIKRAHSANH 569
               + G   +  L              + +L  L   L +        P   R   ++ 
Sbjct: 61  VLGWQGGARHMTDLAHLTQLLGEVAHREHHNLPALRDWLRRQRDERSGAPERNRRLDSDA 120

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             V+IMTV  +KGL+ P+V+L           H         L  D      +      +
Sbjct: 121 AAVQIMTVFVSKGLQYPIVYLPFAF-------HRNTTDSDVVLFHDEDGTRCLHVGGKDS 173

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH----------SNTSNEKKSNQR 679
                + +  +K    + +RL YV +TRA  Q++              S     ++  + 
Sbjct: 174 PDFKTVERLGRKEDASDDSRLTYVALTRAQAQVVAWWSPAYHEPNGGLSRLLRGRRPGEP 233

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
              D    +  +D                 I        P  + +     ++     + I
Sbjct: 234 VVPDRCEPAKISDADALARLREWEAAGGPVIEESVPAPAPPLSGVPVPARLENRHFHRGI 293

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTN--------------------LESLLSDNQT 779
                    +         PS + ++ +                         +      
Sbjct: 294 DTGWRR--TSYSGLIRQAQPSGVGSEPEAAGLDDEVGDILLAPATSVGDVASPMADLPAG 351

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--- 836
              G ++H +LQ                    +     A   +++  ++  + + P+   
Sbjct: 352 ATFGTLVHAVLQTADPFAPDLAAELTARIREHSVWWPVAATPEDMAAAMVPMHDTPLGPL 411

Query: 837 -----MTTAMSCDSYSEVSVSGKINCPKK------------------------------- 860
                +      D   E+     +    +                               
Sbjct: 412 AGGLTLRRIGLSDRLCELDFELPLAGGDRRSAPPEVRLADLSPLLRAHLPADDVLACYAD 471

Query: 861 ------------DIIISGRIDQISISQQ----NIFIFEYKTHHHVPQE------------ 892
                          ++G ID +            + +YKT+     +            
Sbjct: 472 RLTDRSLGAEPLRGYLTGSIDAVLRIPDGAGHRYLVVDYKTNRLGDAQHPLTAADYDRPR 531

Query: 893 --IEHIPYTHIAQLSIYEKILKD 913
                +   +  Q  +Y  +L  
Sbjct: 532 MVEAMLHSDYPLQALLYSAVLHR 554


>gi|238754346|ref|ZP_04615702.1| Helicase IV (75 kDa helicase) [Yersinia ruckeri ATCC 29473]
 gi|238707379|gb|EEP99740.1| Helicase IV (75 kDa helicase) [Yersinia ruckeri ATCC 29473]
          Length = 686

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 36/203 (17%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            E ++++ DE   +  +             + L   L   ++ A K+   +DF  LI   
Sbjct: 373 AEMIEQADDEVRDLFQKR------------VRLMAPLLKVWKNALKEEGAVDFSGLIHQA 420

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +LL K         +      HIL+DE QD S  + +++ +L +         ++   L
Sbjct: 421 VNLLAK--------GRFVSPWKHILVDEFQDISPQRAQLLSALRQ--------QNTQTAL 464

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           FAVGD+ Q+IY F GAE            + A           L  ++R    I  + ++
Sbjct: 465 FAVGDDWQAIYRFSGAELSLTTAFSHNFGEGAE--------CALDTTYRFNDRIGEIANQ 516

Query: 277 VFSIPENAQGLSEDSTTTIRHRS 299
                        +S T    +S
Sbjct: 517 FIQQNPYQLKKPLNSLTKGNKKS 539



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 114/387 (29%), Gaps = 49/387 (12%)

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTIS 354
                   L  +   Q  S+   Q + W  +     +             LA R+A  + 
Sbjct: 300 SDSEARRTLLIKSWQQQCSEKKAQAKGWRQWLTEELEWDVGDGNFWQDKRLAARLAGRLE 359

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR----FLKNDYKISVVGNDRF 410
             +G   +    +  +I+  D  V    +K   L+  L +     LK +  +   G    
Sbjct: 360 RWLGLMRMHGGSQAEMIEQADDEVRDLFQKRVRLMAPLLKVWKNALKEEGAVDFSGLIHQ 419

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCM-LKSPLF-----------NFSEDDIFKICT 458
            +      + +      ++ +  D+S     L S L                  I++   
Sbjct: 420 AVNLLAKGRFVSPWKHILVDEFQDISPQRAQLLSALRQQNTQTALFAVGDDWQAIYRFSG 479

Query: 459 QRHETETVYEYIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                 T + +   + A C +         I E+ +     +P+     +    KG ++ 
Sbjct: 480 AELSLTTAFSHNFGEGAECALDTTYRFNDRIGEIANQFIQQNPYQLKKPLNSLTKGNKKS 539

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
           ++    E ++     L+      +++   +        +     K         +  MT+
Sbjct: 540 VTILPQEQLEP---LLDKLSGYAKDNERIMILARYHHLRPDILQKAKTRWPKLNIDFMTI 596

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KG ++  V +                                P     + +   L+ 
Sbjct: 597 HASKGQQADYVIIAGLHQGN----------------------DGFPAQARESVLEEVLLP 634

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLII 664
             +     E  RLLYV MTRA  Q+ +
Sbjct: 635 QPEDFPDAEERRLLYVAMTRAKHQVWL 661


>gi|290978611|ref|XP_002672029.1| predicted protein [Naegleria gruberi]
 gi|284085602|gb|EFC39285.1| predicted protein [Naegleria gruberi]
          Length = 874

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 68/185 (36%), Gaps = 18/185 (9%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             I  +I ++  +++IDE QD    Q E+           +  H     + AVGD+ Q+I
Sbjct: 214 PEIADEICKKKKYLIIDEYQDIDNFQAEIF----------EEFHKRGCKIIAVGDDSQNI 263

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           YS+ G+  + +L                  ++ L  ++RST +IL V + +     +   
Sbjct: 264 YSWRGSSVEHILNFHSKYPNS--------KLLTLTRNYRSTPEILQVANAILRNNPDNIP 315

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               +T     +   +     + + +++          ++ +  S  +    +    +  
Sbjct: 316 KEMTTTRESNLKPIIVNDNQGLYVAKKISEYLKRGVPRERIAILSPTNYGLYKVEEQLSK 375

Query: 347 RRIAY 351
             I +
Sbjct: 376 FFIPH 380


>gi|34764245|ref|ZP_00145096.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27885979|gb|EAA23304.1| ATP-dependent nuclease subunit A [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 401

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 29/209 (13%)

Query: 83  NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK 142
           N + +  + +  +     +    E   +        +         L+  +   Y+  K 
Sbjct: 186 NKLKKASDAEHKEYINSRQDELKEI--LSKEIFNEVLIPYEEKVFELSSEIYNLYDSFKI 243

Query: 143 KNCVLDFEDLIINTN-------DLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWE 194
           ++    F D+ I T        + L+  +    I ++ +D  I  I IDE QDTS++QW+
Sbjct: 244 RDKKFTFSDIAIYTYMAIFNKNNALRDENGLTDIFFETLDMNIEAIFIDEFQDTSILQWK 303

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++   T+            +++  VGDEKQSIY +   E +     + I           
Sbjct: 304 ILYEFTK----------RAKSVICVGDEKQSIYGWRDGEKRLFENLETIL---------D 344

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPEN 283
                L  S+RS  +I++  ++ F   E 
Sbjct: 345 AKKDNLDKSYRSDRNIVSYCNQFFKAIEK 373


>gi|93007184|ref|YP_581621.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
 gi|92394862|gb|ABE76137.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5]
          Length = 955

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 95/299 (31%), Gaps = 35/299 (11%)

Query: 5   FGLS-LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGN---PTILKKAQTLQQASQTQ 60
           FG+     +   I K  +         ++K +   +        T       L++     
Sbjct: 415 FGIDRHGNTRPDIDKQAYDDSIDSKRKLHKELETVLVETFHYDWTEDALEARLEERLAAV 474

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ-DEFIK--IRDRFNTY 117
            +    + +       K    K     +I   S  L + L+ ++ +   +  I DR    
Sbjct: 475 GVIPDKNSVEEA---SKELLSKLKEGNQIATWSKMLIKALQATRFERLNENSILDRLEKA 531

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
            + ++   +  +   L+  Y E       +DF+D+II    ++           +   + 
Sbjct: 532 GISQAKKKT-RILTDLHNAYVEELVATDSIDFDDMIIRAIAVVDN--------GQYKPQW 582

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            +IL+DE QD S  + E + S+ E             +L  VGD+ QSIY F G + +  
Sbjct: 583 RYILVDEFQDISASRMEFVNSIIEK--------GPDPSLTVVGDDWQSIYRFSGGKLELT 634

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            R                ++  L  +FR    I                    +   I 
Sbjct: 635 TRF--------NELVGPHTLTMLQKTFRYNNSIADTAGTFIMENPEQYQKHIKTHDVIN 685



 Score = 39.5 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 24/145 (16%)

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           + E ++    N+     ++    + L +           N   +   + H +KGLE+   
Sbjct: 706 VAEVVSKIRANDPEGSIAIIARYNYLLKDSRD--FLGKENSKGIHFWSFHKSKGLEADYC 763

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            L+                               P     + I   L+  L      E  
Sbjct: 764 ILIGFFQGKSGF----------------------PNGNREDAIPEALLPTLDSFPHSEER 801

Query: 649 RLLYVGMTRASDQLIICKHSNTSNE 673
           RLLYVG+TR   +  I       +E
Sbjct: 802 RLLYVGITRCKKKSYIIASPTAPSE 826


>gi|108798380|ref|YP_638577.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|108768799|gb|ABG07521.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. MCS]
          Length = 714

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/464 (12%), Positives = 124/464 (26%), Gaps = 84/464 (18%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
              + L+        +  + LL S F        +  +    +       E         
Sbjct: 114 AARRQLRYFWPRVVGDTSWQLLDSKFSVVAQAANRARVQAATDDVRDLAGEIEWAKASLI 173

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED---------LIINTND 158
                     +  +           + A YE  K ++      D         L+++T  
Sbjct: 174 SPEAYPGAVAQAGRDIPMDAAKVAAVYAGYEALKARH------DGTALLDFDDLLLHTAA 227

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            ++     A +  +        ++DE QD + +Q  V+ +                 L  
Sbjct: 228 AIEND---AAVAAEFRDRYRCFVVDEYQDVTPLQQRVLDAWLG----------PRDDLTV 274

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  Q+IYSF GA P+ +L   R             ++I L   +RST  ++++ ++V 
Sbjct: 275 VGDANQTIYSFTGATPRYLLDFSRRFP--------DAAVIRLERDYRSTPQVVSLANRVI 326

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +           + + +     R                                 +  +
Sbjct: 327 AAARGRM-----AGSKLHLVGQRPAGPTP---------------------------AFAE 354

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            +     A  +A  I  ++   T           A +I VL R    + +          
Sbjct: 355 HTDEVAEAAAVAKDIRRLLDAGTP----------AAEIAVLYRINAQSEVYEEALTE--- 401

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--FNFSEDDIFKI 456
              I+              I+  +   +    ++ D     ++++ L     + +     
Sbjct: 402 -AGIAFQVRGGEGFFSRQEIRQALVALQRAAERDVDGEVADVVRAVLEPLGLTAEPPAGT 460

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
             +                  +     +   + EL   A    P
Sbjct: 461 RARERWEALSALAELVDEEVVLRPGLDLRGLVTELRQRADARHP 504



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 80/327 (24%), Gaps = 39/327 (11%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               E    ++           + +  +  +             D    +L       + 
Sbjct: 397 EALTEAGIAFQVRGGEGFFSRQEIRQALVALQRAAERDVDGEVADVVRAVLEPLGLTAEP 456

Query: 518 -ISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIM 575
                  E  + L                  L+ L++EL Q               V + 
Sbjct: 457 PAGTRARERWEALSALAELVDEEVVLRPGLDLRGLVTELRQRADARHPPVVQG---VTLA 513

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H AKGLE   V+LV          H                                 
Sbjct: 514 SLHAAKGLEWDAVYLVGLADGTLPISHALTHGP--------------------------- 546

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                    EE  RLLYVG+TRA   L +           +      + + V      + 
Sbjct: 547 ----DSEPVEEERRLLYVGITRARVHLTLSWALARAPGGRQGRRPSRFLNGVAPHSAPEA 602

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
            V K +          +  +  T  P    L R ET    +DEQ +       ++     
Sbjct: 603 SVNKPRRARGATPRCRVCNQVLTT-PAAIMLRRCETCSSDIDEQLLAALKEWRLRTSKEL 661

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTF 780
                    D       ESL +D    
Sbjct: 662 GVPAFVVFTDNTLIAIAESLPTDEAAL 688


>gi|22126608|ref|NP_670031.1| DNA helicase IV [Yersinia pestis KIM 10]
 gi|45441158|ref|NP_992697.1| DNA helicase IV [Yersinia pestis biovar Microtus str. 91001]
 gi|108806729|ref|YP_650645.1| DNA helicase IV [Yersinia pestis Antiqua]
 gi|108812700|ref|YP_648467.1| DNA helicase IV [Yersinia pestis Nepal516]
 gi|145598818|ref|YP_001162894.1| DNA helicase IV [Yersinia pestis Pestoides F]
 gi|162421603|ref|YP_001607560.1| DNA helicase IV [Yersinia pestis Angola]
 gi|166011987|ref|ZP_02232885.1| helicase IV [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211746|ref|ZP_02237781.1| helicase IV [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167402312|ref|ZP_02307780.1| helicase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167423870|ref|ZP_02315623.1| helicase IV [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229894374|ref|ZP_04509557.1| DNA helicase IV [Yersinia pestis Pestoides A]
 gi|229903096|ref|ZP_04518211.1| DNA helicase IV [Yersinia pestis Nepal516]
 gi|270486898|ref|ZP_06203972.1| UvrD/REP helicase [Yersinia pestis KIM D27]
 gi|294503424|ref|YP_003567486.1| DNA helicase IV [Yersinia pestis Z176003]
 gi|21959616|gb|AAM86282.1|AE013875_11 DNA helicase IV [Yersinia pestis KIM 10]
 gi|45436018|gb|AAS61574.1| DNA helicase IV [Yersinia pestis biovar Microtus str. 91001]
 gi|108776348|gb|ABG18867.1| helicase IV [Yersinia pestis Nepal516]
 gi|108778642|gb|ABG12700.1| putative helicase IV [Yersinia pestis Antiqua]
 gi|145210514|gb|ABP39921.1| helicase IV [Yersinia pestis Pestoides F]
 gi|162354418|gb|ABX88366.1| helicase IV [Yersinia pestis Angola]
 gi|165989154|gb|EDR41455.1| helicase IV [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207517|gb|EDR51997.1| helicase IV [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167048278|gb|EDR59686.1| helicase IV [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056719|gb|EDR66482.1| helicase IV [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229679876|gb|EEO75977.1| DNA helicase IV [Yersinia pestis Nepal516]
 gi|229703772|gb|EEO90788.1| DNA helicase IV [Yersinia pestis Pestoides A]
 gi|262361467|gb|ACY58188.1| DNA helicase IV [Yersinia pestis D106004]
 gi|262365394|gb|ACY61951.1| DNA helicase IV [Yersinia pestis D182038]
 gi|270335402|gb|EFA46179.1| UvrD/REP helicase [Yersinia pestis KIM D27]
 gi|294353883|gb|ADE64224.1| DNA helicase IV [Yersinia pestis Z176003]
 gi|320015694|gb|ADV99265.1| DNA helicase IV [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 684

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 91/303 (30%), Gaps = 30/303 (9%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           +K R G+   ++    +     +             L  ++     L      QQ S+ +
Sbjct: 261 IKQRLGVDSIQAK-TFHALALHIIQQGSRKTPVISKLESDSQARRALLIQHWQQQCSEKK 319

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              + +    +  L            + +  +     E+                  +  
Sbjct: 320 AQAKGWREWLTDELEWDVADGDFWQDKRLAARLASRLERWVGLM-RMYGGSQAEMIEQAN 378

Query: 121 KSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                       L   L   ++ A K    +DF  LI    +LL+K         +    
Sbjct: 379 DEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEK--------GRFVSP 430

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             H+L+DE QD S  +  ++ +L +         +    LFAVGD+ Q+IY F GAE   
Sbjct: 431 WKHVLVDEFQDISPQRAMLLAALRK--------QNKQTCLFAVGDDWQAIYRFSGAELSL 482

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                    + A           L  ++R    I  + ++             +S +   
Sbjct: 483 TTAFSEHFGEGAE--------CALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGN 534

Query: 297 HRS 299
            +S
Sbjct: 535 KKS 537



 Score = 53.8 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/377 (15%), Positives = 121/377 (32%), Gaps = 45/377 (11%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTISNMIGTDTIFS 364
           +Q W+Q  S+  +Q    +E  T   +    +        LA R+A  +   +G   ++ 
Sbjct: 308 IQHWQQQCSEKKAQAKGWREWLTDELEWDVADGDFWQDKRLAARLASRLERWVGLMRMYG 367

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKD 420
             +  +I+  +  V    +K   L+  L +     LK++  +   G     +      + 
Sbjct: 368 GSQAEMIEQANDEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEKGRF 427

Query: 421 LMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETE---TVY 467
           +      ++ +  D+S    +          ++ LF   +D          E        
Sbjct: 428 VSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFS 487

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           E+  + A C +         I ++ +     +P+     +    KG ++ +    +E   
Sbjct: 488 EHFGEGAECALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGNKKSVMILPDEQ-- 545

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L+  L+      ++    L        +     K A       +  MT+H +KG ++  
Sbjct: 546 -LEALLDKLSGFVKDGERILILARYHHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADY 604

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V +V             +  ++  +   P                             E 
Sbjct: 605 VIIVGLHEGNDGFPAAARESVLEDVLLPPPEDFPD----------------------AEE 642

Query: 648 NRLLYVGMTRASDQLII 664
            RLLYV +TRA  Q+ +
Sbjct: 643 RRLLYVAITRAKHQVWL 659


>gi|290893618|ref|ZP_06556600.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071]
 gi|290556820|gb|EFD90352.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071]
          Length = 174

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 55/165 (33%), Gaps = 18/165 (10%)

Query: 786 IHKLLQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
           +H L+Q   +   P  +    +     +   L  A+     +  I    E+P+  T +  
Sbjct: 1   MHTLMQAVSLDYKPTKEDLEQLLRTMQEKDILTDAQIKAINIKQILDFFESPLGETMLQK 60

Query: 844 DSY--SEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHHHVP--- 890
                 EV  S  +            + ++I G +D +   ++ I + +YKT        
Sbjct: 61  KDLVKREVPFSYLLPVSELYENVDIDERVLIQGVVDSMIEEEETITLIDYKTDKIEGRYA 120

Query: 891 ---QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
                 + +   +  Q+ +Y + ++     K     L +     +
Sbjct: 121 NWNAAEKVMKERYHIQIKLYAEAIQAISGKKVAAAYLYFFDGQHI 165


>gi|238789275|ref|ZP_04633062.1| Helicase IV (75 kDa helicase) [Yersinia frederiksenii ATCC 33641]
 gi|238722607|gb|EEQ14260.1| Helicase IV (75 kDa helicase) [Yersinia frederiksenii ATCC 33641]
          Length = 684

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 93/303 (30%), Gaps = 30/303 (9%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           +K R  +  +   +  +     +             L  ++     L      QQ S+ +
Sbjct: 261 IKQRLAVD-DIQAKTFHALALQIIQQGSRKTPVISKLESDSKARRSLLIQHWQQQCSEKK 319

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              + +    +  L       +    + +  +     E+                  +  
Sbjct: 320 AQAKGWREWLTDELEWDVAEGEFWQDKRLAARLAGRLERWLGLM-RMHGGSQAEMIEQAD 378

Query: 121 KSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
           +           L   L   ++ A K+   +DF  LI    +LL K         +    
Sbjct: 379 EEVRDLFQKRVRLMAPLLKTWKAALKEEGAVDFSGLIHQAVNLLDK--------GRFVSP 430

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             HIL+DE QD S  +  ++ +L +         +    LFAVGD+ Q+IY F GAE   
Sbjct: 431 WKHILVDEFQDISPQRAMLLTALRK--------QNKQTCLFAVGDDWQAIYRFSGAELSL 482

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                +   + A           L  ++R    I  + ++             +S +   
Sbjct: 483 TTAFHQSFGEGAE--------CALDTTYRFNDRIGEIANRFIQQNPYQLKKPLNSLSKGN 534

Query: 297 HRS 299
            +S
Sbjct: 535 KKS 537



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 119/377 (31%), Gaps = 45/377 (11%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGTDTIFS 364
           +Q W+Q  S+  +Q    +E  T   +   +  +      LA R+A  +   +G   +  
Sbjct: 308 IQHWQQQCSEKKAQAKGWREWLTDELEWDVAEGEFWQDKRLAARLAGRLERWLGLMRMHG 367

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTR----FLKNDYKISVVGNDRFILTDHLAIKD 420
             +  +I+  D  V    +K   L+  L +     LK +  +   G     +      + 
Sbjct: 368 GSQAEMIEQADEEVRDLFQKRVRLMAPLLKTWKAALKEEGAVDFSGLIHQAVNLLDKGRF 427

Query: 421 LMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETETVYEYI 470
           +      ++ +  D+S    +          ++ LF   +D          E      + 
Sbjct: 428 VSPWKHILVDEFQDISPQRAMLLTALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFH 487

Query: 471 QKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           Q F                 I E+ +     +P+     +    KG ++ +    +E   
Sbjct: 488 QSFGEGAECALDTTYRFNDRIGEIANRFIQQNPYQLKKPLNSLSKGNKKSVVILPSEQ-- 545

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L+  L+      ++    L        +     K A       +  MT+H +KG ++  
Sbjct: 546 -LETLLDKCSGFVKDDERILVLARYHHLRPDILQKAATRWPKLAIDFMTIHASKGQQADY 604

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V +V                         G P    +S   + ++             E 
Sbjct: 605 VIIVGLHEGN------------------DGFPAVARESLLEDVLLPAPEDFPDA----EE 642

Query: 648 NRLLYVGMTRASDQLII 664
            RLLYV MTRA  Q+ +
Sbjct: 643 RRLLYVAMTRAKHQVWL 659


>gi|257138170|ref|ZP_05586432.1| superfamily I DNA/RNA helicase [Burkholderia thailandensis E264]
          Length = 520

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 62/426 (14%), Positives = 118/426 (27%), Gaps = 75/426 (17%)

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS--------YSSLQELISE 553
            F   +  ++   ++     G  V   L +F       E           Y S    +  
Sbjct: 75  QFIAFMEKSELREERVPGGRGEIVFYNLGKFSQAISDFESIHFHSDPVEKYKSFAGFLRF 134

Query: 554 LEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             +         +   + + VRIMTVH AKGL+ PVVF+       F  K     +    
Sbjct: 135 HAENAYPEGWQDNGFVSPDAVRIMTVHQAKGLQWPVVFIPQLVKNRFPAKGGGGRNAWHL 194

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           L  +        +  + +                   RL YV +TRA   L +    +  
Sbjct: 195 LPSEAFSNAARYRGGADD-----------------ERRLFYVAVTRAQKYLHMTWAPHEG 237

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
           N        +Y+ V                   +K      +      + TP  +     
Sbjct: 238 NRTAQVASDFYNEV-----------------LASKYVKRRVQNYATRQQLTPAPKASVAN 280

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
             +    +      P +  +   Y  N                  ++    G  +H  L 
Sbjct: 281 VTLSFSDVKYFFECPYQFKLRILYGFN---------------APLDEALGYGKSLHDALA 325

Query: 792 VIFTLP---EHKRKNFITSYCTKN--AKLWPAKEYKNLLLSITRLLEN--PMMTTAMSCD 844
            +       E            ++  A          L  +  +++           +  
Sbjct: 326 EVHARALRGETIDSREAEELIERHLRAPYAYPDLKDKLKSAAVKVVAAYIRKNAAEFNNL 385

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            +SE ++   +      + ++GRID +       + I + K++     + E +      Q
Sbjct: 386 EFSEKAIEIAL---GDGVSVAGRIDLVRRMDTDEVTIVDLKSN--DRAQAEAVTE---TQ 437

Query: 904 LSIYEK 909
           L IY  
Sbjct: 438 LHIYAL 443


>gi|169837502|ref|ZP_02870690.1| helicase, UvrD/REP family protein [candidate division TM7
           single-cell isolate TM7a]
          Length = 692

 Score = 99.2 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 25/177 (14%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           +       L     +   Y  A      +DF D+I     L++++ V            +
Sbjct: 292 LSARQNLFLDFTLPILEKYNSALSSRSEIDFNDIINWAAKLVQQKGVIQD--------YD 343

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           +I+IDE QD S  ++++I  +            S   L  VGD+ QSIY F G++     
Sbjct: 344 YIIIDEYQDISAARFKLITEI---------RQQSGARLVCVGDDWQSIYRFTGSDISLFS 394

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
              +           +   + +  ++R++  ++ +  K           +  ST  +
Sbjct: 395 DFGK--------FVGEHETLFIERTYRNSQQLIDISAKFIQQNPKQLAKNPKSTKEL 443



 Score = 45.7 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +  +T H +KGLE+  V +++  +                           P   + + 
Sbjct: 529 NITFITAHKSKGLEADNVIVLNLKND----------------------LYGFPNKLTDDP 566

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           I+S L+   +     E  RL YV +TR  +++ +    N S
Sbjct: 567 IISLLLSAPEACRFAEERRLFYVALTRTKNKVYLMVSENES 607


>gi|300929663|ref|ZP_07145123.1| UvrD/REP helicase [Escherichia coli MS 187-1]
 gi|300949666|ref|ZP_07163649.1| UvrD/REP helicase [Escherichia coli MS 116-1]
 gi|300955382|ref|ZP_07167759.1| UvrD/REP helicase [Escherichia coli MS 175-1]
 gi|331641491|ref|ZP_08342626.1| helicase IV (75 kDa helicase) [Escherichia coli H736]
 gi|300317717|gb|EFJ67501.1| UvrD/REP helicase [Escherichia coli MS 175-1]
 gi|300450935|gb|EFK14555.1| UvrD/REP helicase [Escherichia coli MS 116-1]
 gi|300462401|gb|EFK25894.1| UvrD/REP helicase [Escherichia coli MS 187-1]
 gi|331038289|gb|EGI10509.1| helicase IV (75 kDa helicase) [Escherichia coli H736]
          Length = 715

 Score = 98.8 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +     +  L +++
Sbjct: 525 ERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKL 584

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 585 SGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|114797384|ref|YP_761226.1| ATP-dependent DNA helicase domain-containing protein [Hyphomonas
            neptunium ATCC 15444]
 gi|114737558|gb|ABI75683.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Hyphomonas neptunium ATCC 15444]
          Length = 1715

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 16/161 (9%)

Query: 148  DFEDLIINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
            DF+  I     LL         +   R  + Q    IL+DE QD    +  ++ ++    
Sbjct: 1207 DFDRAIEAATQLLNGDGLTTVEAEAQRDTLVQGYRWILVDEYQDIGPNEHGLVAAIAGRS 1266

Query: 204  FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                +      +LFAVGD+ Q+IY+F GA  + + + +     +            L  +
Sbjct: 1267 L---DDPDQRLSLFAVGDDDQNIYAFGGASVEYIRKFEADYSAKPA---------FLVQN 1314

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +RST  I+   ++V +  +    ++         R++  G 
Sbjct: 1315 YRSTRHIIEAANQVIAPAKERMKIAHAIEIDQGRRTAPKGG 1355


>gi|170769313|ref|ZP_02903766.1| helicase IV [Escherichia albertii TW07627]
 gi|170121965|gb|EDS90896.1| helicase IV [Escherichia albertii TW07627]
          Length = 714

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 93/288 (32%), Gaps = 42/288 (14%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +   +  D        +++  K  S              + +Q +               
Sbjct: 322 TVSKLENDTAARHELFINEWRKQCSEKKTQAKGWRQWLTEEMQWSVPEGNF------WDD 375

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L ++   + +     +        E +  + +E   +  +             + L  
Sbjct: 376 EKLQRRLASRLDRWVALMRMHGGAQAEMIASAPEEIRDVFSKR------------IKLMA 423

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   ++ A K +  +DF  LI     +L+K         +      +IL+DE QD S  
Sbjct: 424 PLLKAWKSALKADNAVDFSGLIHQAIVILEK--------GRFISPWKYILVDEFQDISPQ 475

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+                  
Sbjct: 476 RAALLAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF------- 520

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +    +L  ++R  + I  V ++      N      +S T    ++
Sbjct: 521 -GEGDRCDLDTTYRFNSRIGEVANRFIQQNPNQLKKPLNSLTHGDKKA 567



 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 26/219 (11%)

Query: 446 FNFSEDDIFKICTQRHETET-VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                  I++    +    T  +E   +   C +         I E+ +     +P+   
Sbjct: 495 VGDDWQAIYRFSGAQMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPNQLK 554

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +     G ++ ++         LD  L+      +     L        +     K  
Sbjct: 555 KPLNSLTHGDKKAVTLLEESQ---LDALLDKLSGYAKPDERILVLARYHHLKPASLEKAV 611

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 ++  MT+H +KG ++  V +V                               P 
Sbjct: 612 TRWPKLQIDFMTIHASKGQQADYVIIVGLQEGS----------------------DGFPT 649

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           +   + I   L+  ++     E  RL+YV +TRA  ++ 
Sbjct: 650 AARESIIEEALLPQVEDFPDAEERRLMYVALTRARHRVW 688


>gi|253688921|ref|YP_003018111.1| UvrD/REP helicase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755499|gb|ACT13575.1| UvrD/REP helicase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 685

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 28/221 (12%)

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            P+         ++   L      SQ + +++       +  +     + L   L   ++
Sbjct: 345 DPKLAGRLAGRLERWLGLMRMHGGSQSDMVELAPESLRTEFQQR----VRLMAPLLKAWK 400

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           +A K    +DF  LI    +LL K         +      HIL+DE QD S  +  ++ +
Sbjct: 401 KALKDENAVDFSGLIHQAVNLLDK--------GRFVSPWKHILVDEFQDISPQRASLLAA 452

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L           +S   LFAVGD+ Q+IY F GAE       ++                
Sbjct: 453 LRR--------QNSRTCLFAVGDDWQAIYRFSGAELTLTTAFEQHF--------GVGEQC 496

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            L  ++R    I  + +              +S +    ++
Sbjct: 497 ALDTTYRFNERIGEIANTFIQQNPYQLKKPLNSLSKGDKKA 537



 Score = 45.7 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 54/387 (13%), Positives = 110/387 (28%), Gaps = 49/387 (12%)

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS-------ILARRIAYTIS 354
                  +L      Q  ++   Q   W  +     +             LA R+A  + 
Sbjct: 298 SDAKQRRELLISHWQQQCAEKKTQANGWRRWLTEELEWDIPEGDFWNDPKLAGRLAGRLE 357

Query: 355 NMIG----TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +G         S+  +   ++       R R   PL+    + LK++  +   G    
Sbjct: 358 RWLGLMRMHGGSQSDMVELAPESLRTEFQQRVRLMAPLLKAWKKALKDENAVDFSGLIHQ 417

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQR 460
            +      + +      ++ +  D+S               ++ LF   +D         
Sbjct: 418 AVNLLDKGRFVSPWKHILVDEFQDISPQRASLLAALRRQNSRTCLFAVGDDWQAIYRFSG 477

Query: 461 HETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
            E      + Q F               + I E+ +     +P+     +    KG ++ 
Sbjct: 478 AELTLTTAFEQHFGVGEQCALDTTYRFNERIGEIANTFIQQNPYQLKKPLNSLSKGDKKA 537

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
           ++       D L+  L+      +     L        +     K A    +  +  MTV
Sbjct: 538 VTILP---QDQLEPLLDKLSSFVKADERILVLARYHHLRPAILDKAATKWPNLHIDFMTV 594

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KG ++  V +V            +     P+        +        +        
Sbjct: 595 HASKGQQAEYVIIVGMHEG-------RDGFPAPARESVIEAVLLPEPEDFPD-------- 639

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLII 664
                   E  RLLYV +TRA  ++ +
Sbjct: 640 -------AEERRLLYVALTRAKHRVWL 659


>gi|68006458|ref|XP_670372.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56485563|emb|CAI02837.1| hypothetical protein PB300937.00.0 [Plasmodium berghei]
          Length = 248

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 50/189 (26%)

Query: 131 KYLNAHYEEAKKKNCVL--DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +    +Y++  +K   +  DF+DL+I T  L+K       IR KI +E NHI  DE QD 
Sbjct: 38  RKFYENYKKIFEKEKFIYYDFDDLLIETYKLMKDNI---PIRNKILEEWNHIFCDEFQDI 94

Query: 189 SLIQWEVIRSLT------------------------------------EDFFVGKNTHSS 212
           +  Q+ +++                                                + +
Sbjct: 95  NTTQFNILQFFANMQYDVKPTMDNECIDEDMDIFVENDPSKFIKKHSKNSKIQNNKRNKT 154

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
             ++  +GD+ QSIY+F GA            +K            +L  +FRST +I+ 
Sbjct: 155 KTSITVIGDDDQSIYAFRGAHASV-------FKKIIKECNCLL--FKLSTNFRSTKEIVR 205

Query: 273 VVDKVFSIP 281
           + + +    
Sbjct: 206 ISNNLILNN 214


>gi|51595798|ref|YP_069989.1| DNA helicase IV [Yersinia pseudotuberculosis IP 32953]
 gi|153948937|ref|YP_001401501.1| DNA helicase IV [Yersinia pseudotuberculosis IP 31758]
 gi|170024850|ref|YP_001721355.1| DNA helicase IV [Yersinia pseudotuberculosis YPIII]
 gi|186894881|ref|YP_001871993.1| DNA helicase IV [Yersinia pseudotuberculosis PB1/+]
 gi|51589080|emb|CAH20698.1| putative DNA helicase IV [Yersinia pseudotuberculosis IP 32953]
 gi|152960432|gb|ABS47893.1| helicase IV [Yersinia pseudotuberculosis IP 31758]
 gi|169751384|gb|ACA68902.1| UvrD/REP helicase [Yersinia pseudotuberculosis YPIII]
 gi|186697907|gb|ACC88536.1| UvrD/REP helicase [Yersinia pseudotuberculosis PB1/+]
          Length = 684

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 91/303 (30%), Gaps = 30/303 (9%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           +K R G+   ++    +     +             L  ++     L      QQ S+ +
Sbjct: 261 IKQRLGVDSIQAK-TFHALALHIIQQGSRKTPVISKLESDSQARRALLIQHWQQQCSEKK 319

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              + +    +  L            + +  +     E+                  +  
Sbjct: 320 AQAKGWREWLTDELEWDVADGDFWQDKRLAARLASRLERWVGLM-RMHGGSQAEMIEQAN 378

Query: 121 KSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                       L   L   ++ A K    +DF  LI    +LL+K         +    
Sbjct: 379 DEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEK--------GRFVSP 430

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             H+L+DE QD S  +  ++ +L +         +    LFAVGD+ Q+IY F GAE   
Sbjct: 431 WKHVLVDEFQDISPQRAMLLAALRK--------QNKQTCLFAVGDDWQAIYRFSGAELSL 482

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                    + A           L  ++R    I  + ++             +S +   
Sbjct: 483 TTAFSEHFGEGAE--------CALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGN 534

Query: 297 HRS 299
            +S
Sbjct: 535 KKS 537



 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/377 (15%), Positives = 120/377 (31%), Gaps = 45/377 (11%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTISNMIGTDTIFS 364
           +Q W+Q  S+  +Q    +E  T   +    +        LA R+A  +   +G   +  
Sbjct: 308 IQHWQQQCSEKKAQAKGWREWLTDELEWDVADGDFWQDKRLAARLASRLERWVGLMRMHG 367

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKD 420
             +  +I+  +  V    +K   L+  L +     LK++  +   G     +      + 
Sbjct: 368 GSQAEMIEQANDEVRDLFQKRIRLMAPLLKAWKTALKDEGAVDFSGLIHQAVNLLEKGRF 427

Query: 421 LMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETE---TVY 467
           +      ++ +  D+S    +          ++ LF   +D          E        
Sbjct: 428 VSPWKHVLVDEFQDISPQRAMLLAALRKQNKQTCLFAVGDDWQAIYRFSGAELSLTTAFS 487

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           E+  + A C +         I ++ +     +P+     +    KG ++ +    +E   
Sbjct: 488 EHFGEGAECALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGNKKSVMILPDEQ-- 545

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L+  L+      ++    L        +     K A       +  MT+H +KG ++  
Sbjct: 546 -LEALLDKLSGFVKDGERILILARYHHLRPEVLQKAATRWPKLTIDFMTIHASKGQQADY 604

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V +V             +  ++  +   P                             E 
Sbjct: 605 VIIVGLHEGNDGFPAAARESVLEDVLLPPPEDFPD----------------------AEE 642

Query: 648 NRLLYVGMTRASDQLII 664
            RLLYV +TRA  Q+ +
Sbjct: 643 RRLLYVAITRAKHQVWL 659


>gi|332174077|gb|AEE23331.1| UvrD/REP helicase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 947

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 33/185 (17%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           +      +L + +   Y++  ++   +DFED++    + ++        + K      +I
Sbjct: 600 QQIRLVFSLLRPIYQQYQKYLRQQAKIDFEDMVGKAINYVE--------QKKFVAPWRYI 651

Query: 181 LIDEVQDTSLIQWEVIRSLTE-----------------DFFVGKNTHSSPRTLFAVGDEK 223
           ++DE QD S  +  ++R+L +                      +   + P +LF VGD+ 
Sbjct: 652 MVDEFQDISEPRARLVRALRDSTWPKIARPESAQRENAKPERAQPEKAQPASLFCVGDDW 711

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IY F GA+       ++             S   L  +FR    I     +  S    
Sbjct: 712 QAIYRFSGADVSLTTGFRQYF--------GPSSQNVLDQTFRFNDRIGNTATQFVSQNPE 763

Query: 284 AQGLS 288
                
Sbjct: 764 QISKE 768



 Score = 44.9 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 22/101 (21%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +R +++H AKG E+    L                                P SK  + +
Sbjct: 850 IRSLSIHAAKGKEADYAILTGMTQGQ----------------------HGFPASKVTSPL 887

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
           +  L+   +     E  RL YV +TRA  ++ I    N  +
Sbjct: 888 LEALLPVEETYPNAEERRLFYVALTRAKHKVYILADKNQPS 928


>gi|119867477|ref|YP_937429.1| UvrD/REP helicase [Mycobacterium sp. KMS]
 gi|119693566|gb|ABL90639.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. KMS]
          Length = 707

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/464 (12%), Positives = 124/464 (26%), Gaps = 84/464 (18%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
              + L+        +  + LL S F        +  +    +       E         
Sbjct: 107 AARRQLRYFWPRVVGDTSWQLLDSKFSVVAQAANRARVQAATDDVRDLAGEIEWAKASLI 166

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED---------LIINTND 158
                     +  +           + A YE  K ++      D         L+++T  
Sbjct: 167 SPEAYPGAVAQAGRDIPMDAAKVAAVYAGYEALKARH------DGTALLDFDDLLLHTAA 220

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            ++     A +  +        ++DE QD + +Q  V+ +                 L  
Sbjct: 221 AIEND---AAVAAEFRDRYRCFVVDEYQDVTPLQQRVLDAWLG----------PRDDLTV 267

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  Q+IYSF GA P+ +L   R             ++I L   +RST  ++++ ++V 
Sbjct: 268 VGDANQTIYSFTGATPRYLLDFSRRFP--------DAAVIRLERDYRSTPQVVSLANRVI 319

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +           + + +     R                                 +  +
Sbjct: 320 AAARGRM-----AGSKLHLVGQRPAGPTP---------------------------AFAE 347

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            +     A  +A  I  ++   T           A +I VL R    + +          
Sbjct: 348 HTDEVAEAAAVAKDIRRLLDAGTP----------AAEIAVLYRINAQSEVYEEALTE--- 394

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--FNFSEDDIFKI 456
              I+              I+  +   +    ++ D     ++++ L     + +     
Sbjct: 395 -AGIAFQVRGGEGFFSRQEIRQALVALQRAAERDVDGEVADVVRAVLEPLGLTAEPPAGT 453

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
             +                  +     +   + EL   A    P
Sbjct: 454 RARERWEALSALAELVDEEVVLRPGLDLRGLVTELRQRADARHP 497



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 80/327 (24%), Gaps = 39/327 (11%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               E    ++           + +  +  +             D    +L       + 
Sbjct: 390 EALTEAGIAFQVRGGEGFFSRQEIRQALVALQRAAERDVDGEVADVVRAVLEPLGLTAEP 449

Query: 518 -ISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIM 575
                  E  + L                  L+ L++EL Q               V + 
Sbjct: 450 PAGTRARERWEALSALAELVDEEVVLRPGLDLRGLVTELRQRADARHPPVVQG---VTLA 506

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H AKGLE   V+LV          H                                 
Sbjct: 507 SLHAAKGLEWDAVYLVGLADGTLPISHALTHGP--------------------------- 539

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                    EE  RLLYVG+TRA   L +           +      + + V      + 
Sbjct: 540 ----DSEPVEEERRLLYVGITRARVHLTLSWALARAPGGRQGRRPSRFLNGVAPHSAPEA 595

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
            V K +          +  +  T  P    L R ET    +DEQ +       ++     
Sbjct: 596 SVNKPRRARGATPRCRVCNQVLTT-PAAIMLRRCETCSSDIDEQLLAALKEWRLRTSKEL 654

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTF 780
                    D       ESL +D    
Sbjct: 655 GVPAFVVFTDNTLIAIAESLPTDEAAL 681


>gi|283833754|ref|ZP_06353495.1| helicase IV [Citrobacter youngae ATCC 29220]
 gi|291070413|gb|EFE08522.1| helicase IV [Citrobacter youngae ATCC 29220]
          Length = 684

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 96/300 (32%), Gaps = 42/300 (14%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +   +  D        V+   +  S              + +Q +               
Sbjct: 292 TVSKLENDAVARNKLFVTTWRQQCSEKKAQAKGWRQWLEEEMQWSVPEGNF------WDD 345

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L ++   + +     +        E +  + +E   +  +             + L  
Sbjct: 346 EKLQRRLASRLDRWVSLMRMHGGAQAEMIANAPEEIRDLFSKR------------IKLMA 393

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  
Sbjct: 394 PLLKAWKSALKDENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQ 445

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+       ++         
Sbjct: 446 RAALLAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFQQNF------- 490

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
             +     L  ++R  + I  V ++      +      +S TT   ++  +     + L 
Sbjct: 491 -GEGDRCHLDTTYRFNSRIGEVANQFIQQNPHQLTKPLNSLTTGDKKAVTLLDENQLDLL 549



 Score = 45.7 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 99/341 (29%), Gaps = 42/341 (12%)

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFL 396
               L RR+A  +   +    +    +  +I    ++I  L  KR     PL+      L
Sbjct: 344 DDEKLQRRLASRLDRWVSLMRMHGGAQAEMIANAPEEIRDLFSKRIKLMAPLLKAWKSAL 403

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIF 454
           K++  +   G     +      + +      ++ +  D+S      L +     S+  +F
Sbjct: 404 KDENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLF 463

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDF 503
            +                        F                 I E+ +     +PH  
Sbjct: 464 AVGDDWQAIYRFSGAQLSLTTAFQQNFGEGDRCHLDTTYRFNSRIGEVANQFIQQNPHQL 523

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              +     G ++ ++         LD  L+      +     L        +     K 
Sbjct: 524 TKPLNSLTTGDKKAVTLLDENQ---LDLLLDKLSGFVKAEERILVLARYHHLKPASLEKA 580

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
           A      ++  MT+H +KG ++  V +V                         G P    
Sbjct: 581 ATRWPKLQLDFMTIHASKGQQADYVIVVGLHEGN------------------DGFPAPAR 622

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           +S     ++  +          E  RLLYV +TRA  ++ +
Sbjct: 623 ESIMEEALLPAVEDFPDA----EERRLLYVALTRARHRVWL 659


>gi|300937687|ref|ZP_07152490.1| UvrD/REP helicase [Escherichia coli MS 21-1]
 gi|300457288|gb|EFK20781.1| UvrD/REP helicase [Escherichia coli MS 21-1]
          Length = 715

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPAGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 568



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPAGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|295107845|emb|CBL21798.1| Superfamily I DNA and RNA helicases [Ruminococcus obeum A2-162]
          Length = 1125

 Score = 98.8 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 76/175 (43%), Gaps = 22/175 (12%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
            T   L +++     Y++   +N  +DFED+I  +  +L        ++ K+D    +++
Sbjct: 493 RTKLFLEISQACYLEYKKWLIENHAVDFEDMINESARILNN---VKEMKQKLD--FKYLI 547

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  +++++++ +E              + AVGD+ QSIY+F G++        
Sbjct: 548 VDEYQDISRQRFDLVKAFSEVTSA---------KVMAVGDDWQSIYAFSGSDITLF---- 594

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                +         ++++  ++R++ +++ +         +    +  S   I 
Sbjct: 595 ----TKFEEKMGYARLMKIVHTYRNSQEVIDIAGNFIQKNTSQIRKALISPKHIE 645



 Score = 49.2 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 34/103 (33%), Gaps = 22/103 (21%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +  MT H +KGL    V +++                              P     + 
Sbjct: 736 NITFMTAHASKGLGYDEVIVIN----------------------GRNETYGFPSKIEDDP 773

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           ++S ++K  +     E  RL YV MTR  +++         +E
Sbjct: 774 VLSLVVKEDRSMQYAEERRLFYVAMTRTKNRVYFIAPEQNPSE 816


>gi|261822106|ref|YP_003260212.1| DNA helicase IV [Pectobacterium wasabiae WPP163]
 gi|261606119|gb|ACX88605.1| UvrD/REP helicase [Pectobacterium wasabiae WPP163]
          Length = 685

 Score = 98.5 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   +++A K    +DF  LI    +LL           +      HIL+DE Q
Sbjct: 389 IRLMAPLLKVWKKALKDENAVDFSGLIHQAVNLLDN--------GRFVSPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L           +S   LFAVGD+ Q+IY F GAE       ++    
Sbjct: 441 DISPQRASLLAALRR--------QNSRTCLFAVGDDWQAIYRFSGAELALTTAFEQHF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                        L  ++R    I  + +              +S +    ++
Sbjct: 491 ------GVGEQCALDTTYRFNERIGEIANTFIQQNPYQLKKPLNSLSKGDKKA 537



 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 111/387 (28%), Gaps = 49/387 (12%)

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS-------ILARRIAYTIS 354
                  +L      Q  ++   Q   W  +     +            +LA R+A  + 
Sbjct: 298 SDAKQRRELLISHWQQQCAEKKTQANGWRRWLTEELEWDVPEGDFWNDSMLAGRLAGRLE 357

Query: 355 NMIGTDTIFSNGKKRVIQAKDILV----LVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +G   +    +  +++     +      R R   PL+    + LK++  +   G    
Sbjct: 358 RWLGLMRMHGGSQSEMVEQAPESIRAEFQQRIRLMAPLLKVWKKALKDENAVDFSGLIHQ 417

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQR 460
            +      + +      ++ +  D+S               ++ LF   +D         
Sbjct: 418 AVNLLDNGRFVSPWKHILVDEFQDISPQRASLLAALRRQNSRTCLFAVGDDWQAIYRFSG 477

Query: 461 HETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
            E      + Q F               + I E+ +     +P+     +    KG ++ 
Sbjct: 478 AELALTTAFEQHFGVGEQCALDTTYRFNERIGEIANTFIQQNPYQLKKPLNSLSKGDKKA 537

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
           ++    +  +     L+      +     L        +     K A    +  +  MTV
Sbjct: 538 VTILPQDQFEP---LLDKLSGFAKADERILVLARYHHLRPAVLEKAATKWPNLHIDFMTV 594

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KG ++  V +V             +  ++ ++                         
Sbjct: 595 HASKGQQAEYVIIVGLHEGKDGFPAPARESVIEAVLLPDPENFPD--------------- 639

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLII 664
                   E  RLLYV +TRA  ++ +
Sbjct: 640 -------AEERRLLYVALTRAKHRVWL 659


>gi|329946359|ref|ZP_08293926.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527335|gb|EGF54333.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 1207

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/450 (11%), Positives = 120/450 (26%), Gaps = 84/450 (18%)

Query: 540  EQNSYSSLQELISELEQY--PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            E++        ++EL+    P             V +MT     G E  +V +       
Sbjct: 652  ERHPGQDASSFLAELDAEVLPSDSVAPRGRRPEGVAVMTPARCAGQEWELVVVTGLERDR 711

Query: 598  FSHKHIKKMHIMPSLNDDP--GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +    ++       L  D                +  S  I   +   + +  R+L + +
Sbjct: 712  WPDLRLRDSLTRTGLLVDAVTDRLPAGANGPEAASEGSGAIAAARAQVRADERRMLIMAL 771

Query: 656  TRASDQLIICKHSNTSNEKKSN---------------------QRTWYDMVYDSFHNDER 694
            +RA+ +L++   ++  +                               D++      + R
Sbjct: 772  SRATRRLLLTATADAEHAPSPFLTEIAQAIGIHLTDSDGAPILAPDTGDLILRGLVGELR 831

Query: 695  VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               +                +          ++                 +       E 
Sbjct: 832  HAAVAGNLETATPTERQRGRAAVELLADLARQDVPGADPAAWIGATGPTSTTPLVAKGER 891

Query: 755  YILNPSTIDTKGKTNLESLLSDN-------QTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
              ++PS ++      L+  L+ N            G +IH++ +      EH R   + +
Sbjct: 892  IRVSPSDVEGLAACPLKWFLNRNGGSAPASDAQALGSLIHEIAERAE--SEHLRGAALRA 949

Query: 808  YCTKNAKLW---PAKEYKNLLLSITRLLE--NPMMTTAMSCDSYS--EVSVSGKINCPKK 860
               +                      ++E  +  +T   +    +  E  V   ++ P +
Sbjct: 950  AFEERLGDLGYPDTWLGGLAAERARAMIERLDAYLTECDALGVRADVEHPVRADVDIPLQ 1009

Query: 861  ----------------------DIIISGRIDQISISQQN----------------IFIFE 882
                                   + ISGRID++     +                  + +
Sbjct: 1010 VLSPEVRGRVGVRMSVGGLDAVPVRISGRIDRLEHLGDHAGQDLDDPAAPAGNSSARVID 1069

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
             KT   VP++++  P     QL+ Y   L 
Sbjct: 1070 LKTGQRVPKDVQRHP-----QLATYRLALA 1094



 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 56/469 (11%), Positives = 132/469 (28%), Gaps = 63/469 (13%)

Query: 2   KNRFGLSLNESYELIYK--DLWPLPYFQVS---DINKYVSLSMETGNPTILKKAQTLQQ- 55
           ++   L+   +     +      L          +    +L++     ++ K+   L   
Sbjct: 63  RDALLLAPTRARADWLRGRAALLLREGYGDGVVRVRTPAALALTILTTSLTKRPAPLPAP 122

Query: 56  -ASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112
                   +   + + S   +    P +   ++    +  +L  +  +      ++ D  
Sbjct: 123 VLLAGAEEDSVLASMISVI-SWPGLPAETTGSRAFRSELRNLLARAGELGITADELADLG 181

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R     ++      L           + + +   +D   L     + L+  D  A     
Sbjct: 182 RRLNVPIWGPAAELLRTWDAQGRPSADRRAQTRKMDTARLQDRAVEALRSWDSDAVTDPP 241

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                + +++D+ QD +     ++ +L      G         +  +GD   ++ +F G 
Sbjct: 242 PVP--DLVIVDDYQDCTAATARLLTALATPDPDGHRAQ-----IAVLGDPDVAVETFRGG 294

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P  ++  +         +G   S ++L   +R   +  +VV    +        S   T
Sbjct: 295 TPSLLVAAEDH-------SGLGASRLQLTTCYRGNPETASVVADQSARVPVTGTASHRQT 347

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                RSS                  + +             +       + +AR +   
Sbjct: 348 ALAPPRSSS-------------RLSEEPEREGTAPVGVEAILASSVWQERAHVARALRLE 394

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFI 411
                           R      + V+VR   D   +    R       + +       +
Sbjct: 395 -------------HVHRGTAWSQMAVIVRSSADAESLARDLR----RRGVPLASRTPAVL 437

Query: 412 LTDHLAIKDLMALGRFILSQE--------DDLSFVCMLKSPLFNFSEDD 452
           L    A   L+ + R  +S +           + V +L SPL   +  D
Sbjct: 438 LRAEPASAALLDIVRAAVSDQLGGGGELPQREASVNLLTSPLVGLTTMD 486


>gi|330446369|ref|ZP_08310021.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490560|dbj|GAA04518.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 693

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 70/195 (35%), Gaps = 20/195 (10%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
           +  I+     N   M     + L L       Y +  K    +DF  +I      +K+  
Sbjct: 369 EALIEEIQNNNNPAMRPRMKSELELLWPCYQAYLQHLKVKKQIDFNSMIDVATKYVKE-- 426

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                  K       I++DE QD S  +  +I ++ E    G++T     TLFAVGD+ Q
Sbjct: 427 ------GKFTSPWRFIMVDEYQDISPQRLALIEAICEQQPEGQST----PTLFAVGDDWQ 476

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           +IY F GA+       +               I EL  ++R  + I  V +       + 
Sbjct: 477 AIYRFAGADVNLTTDFEGRF--------GSSHITELSTTYRFNSMIGEVANLFIQQNPSQ 528

Query: 285 QGLSEDSTTTIRHRS 299
                 S T    ++
Sbjct: 529 IKKDLTSFTKQSKKA 543



 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/417 (13%), Positives = 113/417 (27%), Gaps = 62/417 (14%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           +V S       + + + T    +  R      V  + +  S      N Q ++W      
Sbjct: 300 RVRSAWIARMLIEQWNKTESAKKWQRHLTQWRVPGFSKENSMEQQAENEQLQAWIWRHIE 359

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           L  +SS    A         +I      +N   R     ++ +L       P      + 
Sbjct: 360 LLGQSSLGKEA---------LIEEIQNNNNPAMRPRMKSELELL------WPCYQAYLQH 404

Query: 396 LKNDYKISVVG--------NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           LK   +I                  T       +        S +       + +     
Sbjct: 405 LKVKKQIDFNSMIDVATKYVKEGKFTSPWRFIMVDEYQDI--SPQRLALIEAICEQQPEG 462

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-----------HVIKYIHELIHIAQ 496
            S   +F +                       +F                 I E+ ++  
Sbjct: 463 QSTPTLFAVGDDWQAIYRFAGADVNLTTDFEGRFGSSHITELSTTYRFNSMIGEVANLFI 522

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
             +P      +    K  ++ ++   ++++  L +        E    + L    +  ++
Sbjct: 523 QQNPSQIKKDLTSFTKQSKKAVTLLDSDLM--LQDLTRLAKLYENKETTVLILGRNNKQR 580

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                          +  MT H +KG E+  VF+VD    +F                  
Sbjct: 581 PAKLDDWKAQWPQLNLEYMTCHASKGREADYVFIVDVNKGIFPSPDR------------- 627

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                         + + +    +  T  E  RL YV +TRA   + +C +S+ ++ 
Sbjct: 628 -----------ETGLAAVMQPRTENYTDAEERRLFYVALTRARKHVWVCANSHNTSS 673


>gi|294792590|ref|ZP_06757737.1| putative ATP-dependent nuclease, subunit B [Veillonella sp. 6_1_27]
 gi|294456489|gb|EFG24852.1| putative ATP-dependent nuclease, subunit B [Veillonella sp. 6_1_27]
          Length = 1164

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 110/973 (11%), Positives = 245/973 (25%), Gaps = 232/973 (23%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIR------DRFNTYKMFKSTLASLTLAKYL 133
            QK +   E   K P+    L++   EF   R      +R       K     L      
Sbjct: 104 KQKELGLLEQATKRPEFSSVLQQLFSEFRAFRVGPVDLERGAESVKNKVLQKKLRELAIC 163

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            + YEE   ++   D  D I+   + L +  +            +H+ ID     +   +
Sbjct: 164 MSAYEEELSRHGERD-IDPIMEIVEALPQSPLMEN---------SHVFIDGFHWFTPTHY 213

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR---INQKRATN 250
           E+I +L +                        I       PK +   +R   +  +    
Sbjct: 214 ELIYTLFDLAKEAV------------------ITIDLPMAPKALNLARRGEHLFSRPLEI 255

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                +     +++                          +  +    S           
Sbjct: 256 YDTLVARYGSSINW-------------IGFDGKRGPQIVQALESNYFASPSK-------- 294

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                        P    +                A  +A  I   + +           
Sbjct: 295 -----KNSTDATIPLIRGYN-----------REREADAVARRILAYVES--------SEE 330

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + +D+ +++R   ++         +   Y I    + +  + +H   + L AL   +  
Sbjct: 331 ARYRDVCIMLR---ESETYGDTLEKVFARYGIPHFIDRQRPMKNHPLGELLTALFDIVRH 387

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH------- 483
                S   +LK+ L   + + + ++     E    +   ++ +   +  F         
Sbjct: 388 NYSRDSMFLLLKTDLMPLTREAVDELENYVLEFGIDHYKWERESWPYLRGFHEGQDEESH 447

Query: 484 ---------------VIKYIHELIHIAQFCSPHDFFTL------ILGAKKGRQQFISR-- 520
                          ++  +      A     H           +L   +  ++      
Sbjct: 448 VDAPRRARVNKARETIMDILSPWFDFAANAEGHTGAEWGTQLYGLLEILQVPERLYEWAK 507

Query: 521 -----FGNEVIDVLDEFLNFTLRN-------EQNSYSSLQELISELEQYPPTIKRAHSAN 568
                   E     ++  N  L          ++   +L E++  LE+    +  +    
Sbjct: 508 DAETIGDQESKASHEQMYNAVLSFIDEISMVMKDEILTLDEMMLLLEEGLSDVNYSMIPP 567

Query: 569 H-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + V I T+        P VF++     VF                     I   + + 
Sbjct: 568 SLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSM------------GDEGLIKDKERQE 615

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
             +    L +        E   LLY+ MTRASD L +    +  +            +  
Sbjct: 616 LADAGITLAEGALPKAFNENF-LLYLAMTRASDSLTLSYTGSGEDGTGLEPSLVVKRLES 674

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
             + D+    + +  SI  D    Y W      +   ER   +    +   +   L++  
Sbjct: 675 LGYIDQA---VDIPLSIAPDTEADYVWRPLQSLSLLSERWGALFSGYEVNPLWWGLYNWA 731

Query: 748 KNDINEPYIL---------------------------------NPSTIDTKGKTNL---- 770
           +        L                                 + + ++   +       
Sbjct: 732 RESETYRPRLAEVLRGIRDNNDVPVITQDLVNGLFLSKGYMSGSVTRLERYQQCPFKFYA 791

Query: 771 -------ESLLSDNQTFNRGLIIHKLLQVIF-----------TLPEHKRK----NFITSY 808
                     +        G  +H  L+ +             L E +++          
Sbjct: 792 QYGLKLEPRPVRSFGAPEIGTFLHANLERLGNYLLENNKQWRDLDEEEQENLCRTVADEI 851

Query: 809 CTKN--AKLWPAKEYKNLLLSITRLL----------------ENPMMTTAMSCDSYSEVS 850
             +N   +       K +   + R L                +   +          +  
Sbjct: 852 LQENQLGEETSDAYQKAIEQRVQRTLHVTVDRLIEWSKRSDFDTKYLEQDFGRQGGWD-P 910

Query: 851 VSGKINCPKKDIIIS--GRIDQISI--SQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQL 904
           +   +    ++  +   G+ID+I         +  + +YK+        + + Y    QL
Sbjct: 911 IRVPL---GENRYLRLIGQIDRIDEYTKNDQTYGMVIDYKSG-GAHVTAQDVYYGLKLQL 966

Query: 905 SIYEKILKDSYPN 917
             Y   L+ +Y  
Sbjct: 967 MTYLLALESAYGK 979


>gi|219556816|ref|ZP_03535892.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
          Length = 343

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 86/316 (27%), Gaps = 61/316 (19%)

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFAN--------CGISKFQH 483
           D +S   +L +P     +     +     +      + +   A                 
Sbjct: 1   DAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAG 60

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN- 539
            ++   EL          +    +L     R++  +    +    +D L+E ++      
Sbjct: 61  FVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHEFS 119

Query: 540 -----------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESP 586
                      +         L   LE+            H    V +MT+HTAKGLE P
Sbjct: 120 TDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGLEFP 179

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VVF+      +F H                                             E
Sbjct: 180 VVFVTGWEDGMFPHMRALDNPT----------------------------------ELSE 205

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
             RL YVG+TRA  +L + +    S+  +         + +        ++     S + 
Sbjct: 206 ERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSA 265

Query: 707 DEWIAYEWSTHHPENT 722
               A  + +  P  T
Sbjct: 266 PVSGAGRFGSARPSPT 281


>gi|301023091|ref|ZP_07186898.1| UvrD/REP helicase [Escherichia coli MS 69-1]
 gi|300397212|gb|EFJ80750.1| UvrD/REP helicase [Escherichia coli MS 69-1]
          Length = 715

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLIAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 568



 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLIAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|225574651|ref|ZP_03783261.1| hypothetical protein RUMHYD_02728 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038119|gb|EEG48365.1| hypothetical protein RUMHYD_02728 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1111

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 69/677 (10%), Positives = 184/677 (27%), Gaps = 140/677 (20%)

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I  ++           +  +  +I V+     D P      R + +  +I    +++
Sbjct: 324 AAEILRLVRE---------KGYRYGEIAVIT---GDLPSYGTYARQVFSQAQIPYFIDEK 371

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT----------- 458
             +  +  ++ L A    I+ +    S    L+  + + S ++I ++             
Sbjct: 372 HSILMNPFVEFLRAAVEMIVDRFSYESCFRYLRCGMSSLSLEEIDELDNYVTALGIRGYS 431

Query: 459 -------------QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH---- 501
                               +  Y ++F        Q     +  +   +          
Sbjct: 432 KWKETWVRLYPGLDEERILELNRYREQFLKEISWLVQGFRGGVKTVRERSCALYQFISDN 491

Query: 502 DFFTLI----LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
           +    +    L     + + + +   ++  ++   L+  +    +   S +E    LE  
Sbjct: 492 EMQEKLKIQELEFAGRKDKAMEKEYAQIYGIVMRLLDKMVEILGDEKVSAREYQQLLEAG 551

Query: 558 PPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               K A    + ++V +  +   +  E  V+F +            +            
Sbjct: 552 LTEAKVALIPPSSDQVLVGDMERTRLKEIKVLFFLGVNEGNIPKDSSR-----------G 600

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
           G+   + +   +   +        +    +    LY+ +T+  D L +      +  +  
Sbjct: 601 GLLTQMDREFFQEEKIELAPDA--RELLGQSRFYLYLNLTKPQDFLYLSYSQANAKGEGL 658

Query: 677 NQRTWYDMVYDSFHNDER----------------------VKKIKLTNSINKDEWIAYEW 714
           +       +   F                               +         W     
Sbjct: 659 SAAYLVGTIQKLFPALRLRCGQGSSLEGLQRPSGSLDYFLEGLQEYEYGQETKVWRELYR 718

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL---- 770
                E+   +    ++    E    +   +  K    E      + ++           
Sbjct: 719 WYQKDESYRPQVNRLVEAFFSENPQDRISKAVAKALYGEVSPYGATRLEQYAACAFAHFL 778

Query: 771 -------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY-- 821
                  E +  +    + G ++HK L++       +R ++         +L        
Sbjct: 779 RYGLQVTERVQYEFSGMDLGNVMHKALEIFARKVRDQRLSWGELSREDRERLVSESLQEV 838

Query: 822 ---------------KNLLLSITRLLENPMMTTAMSCDSYS--------EVSVSGKINCP 858
                          + L+    R+L       A+              EV+  G     
Sbjct: 839 TEDYGNTILHSCARNEYLIRRTQRVLN--RTAWALQEQLRRGDFQPEGFEVAFEG----- 891

Query: 859 KKDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIY---EKIL 911
                  GRID++     +  ++  + +YKT +     +  + +    QL +Y     ++
Sbjct: 892 -------GRIDRVDICEDENKVYVKVMDYKTGNVSFDLVA-LYHGLQLQLMVYLDAALLV 943

Query: 912 KD-SYPNKSLV-CLLIY 926
           +   YP++ ++   + Y
Sbjct: 944 EQKKYPDREVIPAAIFY 960


>gi|329928677|ref|ZP_08282528.1| UvrD/REP helicase [Paenibacillus sp. HGF5]
 gi|328937573|gb|EGG33989.1| UvrD/REP helicase [Paenibacillus sp. HGF5]
          Length = 628

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 70/537 (13%), Positives = 148/537 (27%), Gaps = 135/537 (25%)

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
                +++       +R  +     H+ +DE QDT    +++I+S               
Sbjct: 198 RLAEYIVRNNPS---VRSSLQLTFGHVFLDEFQDTPEHHYDLIKS---------AFRDQG 245

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             L AVGD+KQ +  + GA      R                    L ++ RS   ++++
Sbjct: 246 NILTAVGDKKQRVMVWAGAADNIFERFTSEFNAVNE---------TLLVNHRSAPKLVSI 296

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
              +         +   +            + G  ++W     + +S             
Sbjct: 297 QQPIIKSMTGQDIIITPNDR-------WSAEDGISEVWGFENEKEESLV----------- 338

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                          ++  I  +I             +   DI +L   RK   + T   
Sbjct: 339 ---------------VSQKIKELIE---------YESLSPNDICIL--TRKLPAIYTKEI 372

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
             +     I     +++       +  ++     +            +   L        
Sbjct: 373 MDMLERNHIHARVEEKYQTLLKEDVIQIIQSIILLALPIKAPDEWAFIIKVLR------- 425

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKK 512
            ++      T  + +   +          + I Y+  L + +A   +  + + L+L    
Sbjct: 426 -QLHGYNSRTSNIVQQTLE---------SNFISYLKTLELKMASITNEGELYLLVLDILN 475

Query: 513 G--RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
              R++    +       LD  +         +Y +L   I                  +
Sbjct: 476 YLDRERLRGLYRQYNNAYLDTLI--------KNYVNLL-WIEYETCTDWVYSIERFKGMH 526

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + +M++H +KGLE  VVFL+      F   +                            
Sbjct: 527 SIPVMSIHKSKGLEYKVVFLIGLEDDAFFGDN---------------------------- 558

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                         +E     +V ++RA +QL I K      EKK+  +     +  
Sbjct: 559 -------------IDEELCTFFVAISRAIEQLFITKCDKRGVEKKTTNKVKPFFILW 602


>gi|238757661|ref|ZP_04618845.1| Helicase IV (75 kDa helicase) [Yersinia aldovae ATCC 35236]
 gi|238704166|gb|EEP96699.1| Helicase IV (75 kDa helicase) [Yersinia aldovae ATCC 35236]
          Length = 684

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 74/203 (36%), Gaps = 36/203 (17%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
            E ++++ DE   +  +             + L   L   ++ A K+   +DF  LI   
Sbjct: 371 AEMIEQADDEVRDLFQKR------------IRLMAPLLKAWKAALKEEGAVDFSGLIHQA 418

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +LL+K         +      HIL+DE QD S  +  ++ +L +         +   +L
Sbjct: 419 VNLLEK--------GRFVSPWKHILVDEFQDISPQRAMLLAALRK--------QNKQTSL 462

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           F VGD+ Q+IY F GAE            + A           L  ++R    I  + ++
Sbjct: 463 FVVGDDWQAIYRFSGAELSLTTSFSENFGESAE--------CALDTTYRFNDRIGDIANR 514

Query: 277 VFSIPENAQGLSEDSTTTIRHRS 299
                        +S +    +S
Sbjct: 515 FIQQNPYQLKKPLNSLSKGSKKS 537



 Score = 51.8 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 118/377 (31%), Gaps = 45/377 (11%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTISNMIGTDTIFS 364
           +  W+Q  S+  +Q    +E  T   +    E        LA R+A  +   +G   +  
Sbjct: 308 ITHWQQQCSEKKAQAKGWREWLTDELEWEIDEGNFWQDKRLAARLAGRLERWLGLMRMHG 367

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKD 420
             +  +I+  D  V    +K   L+  L +     LK +  +   G     +      + 
Sbjct: 368 GSQAEMIEQADDEVRDLFQKRIRLMAPLLKAWKAALKEEGAVDFSGLIHQAVNLLEKGRF 427

Query: 421 LMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETE---TVY 467
           +      ++ +  D+S    +          ++ LF   +D          E     +  
Sbjct: 428 VSPWKHILVDEFQDISPQRAMLLAALRKQNKQTSLFVVGDDWQAIYRFSGAELSLTTSFS 487

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           E   + A C +         I ++ +     +P+     +    KG ++ +    +E   
Sbjct: 488 ENFGESAECALDTTYRFNDRIGDIANRFIQQNPYQLKKPLNSLSKGSKKSVVVLPHEQ-- 545

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L+  L+      ++    L        +     K A       +  MT+H +KG ++  
Sbjct: 546 -LEALLDKLSGFVKDDERILILARYHHLRPEILQKAATRWPKLAIDFMTIHASKGQQADY 604

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V +                                P     + +   L+   +     E 
Sbjct: 605 VIIAGLHEGS----------------------DGFPAVARESVLEEVLLPAPEDFPDAEE 642

Query: 648 NRLLYVGMTRASDQLII 664
            RLLYV +TRA  Q+ +
Sbjct: 643 RRLLYVAITRARHQVWL 659


>gi|300902873|ref|ZP_07120819.1| UvrD/REP helicase [Escherichia coli MS 84-1]
 gi|301302421|ref|ZP_07208552.1| UvrD/REP helicase [Escherichia coli MS 124-1]
 gi|300405086|gb|EFJ88624.1| UvrD/REP helicase [Escherichia coli MS 84-1]
 gi|300842260|gb|EFK70020.1| UvrD/REP helicase [Escherichia coli MS 124-1]
 gi|315258011|gb|EFU37979.1| UvrD/REP helicase [Escherichia coli MS 85-1]
          Length = 715

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +     +  L +++
Sbjct: 525 ERCDLDTTYRFNSRIGKVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKL 584

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 585 SGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I ++ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGKVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|297616710|ref|YP_003701869.1| ATP-dependent nuclease subunit B [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144547|gb|ADI01304.1| ATP-dependent nuclease subunit B [Syntrophothermus lipocalidus DSM
           12680]
          Length = 1147

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 80/711 (11%), Positives = 201/711 (28%), Gaps = 151/711 (21%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                      +A  I  +            R  + +DI VLVR   D  +   L   + 
Sbjct: 314 AAEDRRAEVEAVAREILALCRE---------REYRFRDIAVLVR---DLSIYGELVPQVF 361

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
             Y +    + R  +T +  I+ + +    +LS     +    LK+ L   S +++ ++ 
Sbjct: 362 QVYGLPCFVDSRRPVTSYPLIELVRSALEVVLSGWSYEAVFRFLKTDLVPVSREEVDELE 421

Query: 458 T---------QRHETETVYEYIQKFANCGISKFQHV-IKYIHELIHIA------------ 495
                      R     ++ Y ++++       +   +  I+ +   A            
Sbjct: 422 NYVLAHGIKGSRWADGKLWAYRRRYSLGEEDPEETADLARINRIREKAVAALAWFEEQVK 481

Query: 496 ---QFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDE-------------FLNFTLR 538
                 S      L+L     R++  +     E    L+E              L+  + 
Sbjct: 482 NSPTAGSVTRALYLLLEQLGVRKELEAWSRAAEAEGRLEEAAEHAEVYNQFLGLLDEMVD 541

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             ++   SL+E +  L+     +         ++V + ++  ++  E    F++     V
Sbjct: 542 ALEDYPVSLEEYLRVLDAGLGGLTLGLIPPGLDQVFVGSLERSRPSEVKAAFILGVNDGV 601

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                 +   +               + ++   I    +   ++    E   L+Y G+TR
Sbjct: 602 LPQPPRRDGLLSE-------------KERAELAIFGVELAPGRQERLFEEQFLVYTGLTR 648

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE-RVKKIKLTNSINKDEWIAYEWST 716
           AS+ L +         +  N     D + + F + E     ++         ++A     
Sbjct: 649 ASEYLWVSYPRADEEGRAMNASPVIDRLREVFPSIEVATVSLEPPGGAGDLAYVAVPGRA 708

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSP--------------------------IKND 750
                  L    ++  L        K                               +  
Sbjct: 709 LSFLAARLREAGSLGALDPVWAGAYKWLKKNHTQALHRVLEGFFYRNEEQPLGGDLAQRL 768

Query: 751 INEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
              P  L+ S ++                  E   +  +  + G   H  L+      + 
Sbjct: 769 YGYPLHLSVSQLEQFASCPFAYFIRYGLRAKEKETAKIRPADLGTFFHDALKRFVEEVKI 828

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------------------------ 835
           +R  +         +    +    ++  +   +E+                         
Sbjct: 829 RRLAW-----ETVGRDECRELADEIVSEMVTAMESEMQTLSERRRYLVSKLKEIVEVSAW 883

Query: 836 MMTTAMSCDSYSEVSVSGKI----------NCPKKDIIISGRIDQISISQQN----IFIF 881
            +   ++C  +  V +  +I          +     + + G++D++  +       + + 
Sbjct: 884 AVAEHLACGDFRPVGLELEIGRNGIPPLVVDDGDVKLKLVGKVDRVDAAPNGEGVYLRVI 943

Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
           +YK+     + ++ + Y    QL  Y   +       +  +++   + Y  
Sbjct: 944 DYKSGSTGFK-LDEVYYGLRLQLIAYLDAVVENAAVLWGKEAVPAGVFYFE 993


>gi|159468518|ref|XP_001692421.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158278134|gb|EDP03899.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 815

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 84/715 (11%), Positives = 165/715 (23%), Gaps = 181/715 (25%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           +++R   +  +   LI        Y  +   ++    +            + +  A +  
Sbjct: 192 VRDRLDRAGVDLAGLIAATFHSWAYGLLRTYHRAAGFAQCPTVWKDADLLRAVALAIRLS 251

Query: 61  CIEERFSLLSSFFLTQKF------------TPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            +E     ++++                    +K+ +   +    P    +    Q   +
Sbjct: 252 SLERGRGDMAAWLGLDGGAEPATWAQHVLMKERKSGLPTALRVPFPGRHLRSCAEQARQL 311

Query: 109 KIRDRFNTYKMFKSTLA---------------------SLTLAKY--------------L 133
           + + +  + K  ++  A                      +   K               L
Sbjct: 312 EAKQQKRSKKKKRAIHAPTATEKLGAKPKPATVKEELGWIDFFKRQTVDNISQYPGKQML 371

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y    +    +DF D+++    L++                   L+ E         
Sbjct: 372 FETYTRILRDANAIDFNDMMLLLVQLIRVGRGGGAAGGAATAAGPVALVSE--------- 422

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
                             +   + AVGD+ QSIY F GA P                   
Sbjct: 423 ---------------VAGTHGHVTAVGDDAQSIYRFRGAAPGVFG--------------- 452

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + L L++RST  IL+V   V      A   +  +    +  +              
Sbjct: 453 ----VVLELNYRSTPRILSVGQFVLQAEGGAPAATAKTLRATKPDTGNKE---------- 498

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                           A  IA  +  +                 
Sbjct: 499 -------------------------------EAEWIAAEVERL----------------- 510

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
                               R       I         + +   ++DL+A  R  L+  D
Sbjct: 511 --------------NKEEALR----HRGIPFRLVRDTSVFERREVQDLLAYLRLALNPAD 552

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D +F+ +  +P     +     I                +               +    
Sbjct: 553 DGAFLRVYNTPPRRLGDAKAAFITRLTELQVVESLRRDIWQLGPAGALVRGSDLEYTDDD 612

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                             +    F       +     E +   L       SS + +   
Sbjct: 613 EEDEVQESGDGGGEGEGLQVPDLFRIATRALLNSYTGEEVQAALGCVCPHTSSPRVMPFV 672

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           LEQ      R   A  + +  + +    GLE P VF+                       
Sbjct: 673 LEQVFGEHGRGPLALRDFLAHVALSDKWGLEFPAVFVARWSQGYLPT------------- 719

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                P             +   +   +   EE  RL +V +TRA ++L I    
Sbjct: 720 --LYRPDKKRGKNMSEADRAAFEEQDAQEHTEEERRLAHVAVTRAMERLYITSIR 772


>gi|212709835|ref|ZP_03317963.1| hypothetical protein PROVALCAL_00883 [Providencia alcalifaciens DSM
           30120]
 gi|212687646|gb|EEB47174.1| hypothetical protein PROVALCAL_00883 [Providencia alcalifaciens DSM
           30120]
          Length = 692

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 67/181 (37%), Gaps = 24/181 (13%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           +       + L   L   ++ A K    +DF  LI    ++++K         +      
Sbjct: 389 IRDRFQKRIRLMAPLLKVWKNALKDEGAIDFSGLIHQAVNIIEK--------GRFISPWK 440

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HIL+DE QD S ++  ++++L +         +    LFAVGD+ Q+IY F GAE     
Sbjct: 441 HILVDEFQDISPLRARLLQALRQ--------QNKQTCLFAVGDDWQAIYRFSGAELGLTT 492

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             K               +  L  ++R    I  + ++      +      +S      +
Sbjct: 493 AFKTHF--------GDGDLCALDTTYRFNERIGDIANRFVLQNPSQLDKPLNSLIKGNKK 544

Query: 299 S 299
           S
Sbjct: 545 S 545



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 105/346 (30%), Gaps = 42/346 (12%)

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR- 394
             +  +   ++R++   +   +         +K +++     +  R +K   L+  L + 
Sbjct: 347 DGEYWNDEKISRKVVIRLERWLSLIRSHGGSQKEMVENTPEEIRDRFQKRIRLMAPLLKV 406

Query: 395 ---FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML---------- 441
               LK++  I   G     +      + +      ++ +  D+S +             
Sbjct: 407 WKNALKDEGAIDFSGLIHQAVNIIEKGRFISPWKHILVDEFQDISPLRARLLQALRQQNK 466

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFC 498
           ++ LF   +D          E      +   F +  +          + I ++ +     
Sbjct: 467 QTCLFAVGDDWQAIYRFSGAELGLTTAFKTHFGDGDLCALDTTYRFNERIGDIANRFVLQ 526

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
           +P      +    KG ++ +        D L+  L+          + L        +  
Sbjct: 527 NPSQLDKPLNSLIKGNKKSVVLLY---EDALERLLDKMSGYVLEDENILILARYHYLKPE 583

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              K A       ++ MT+H +KG ++  V +                          G 
Sbjct: 584 ILNKAATRWPKLNIQFMTMHASKGQQADHVIICGLNGGK------------------EGF 625

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           P    +S   + ++    +        E  RL YV +TRA  Q+ +
Sbjct: 626 PAPARESIIEDALLPQPEQFEHA----EERRLFYVALTRAKQQVWL 667


>gi|147864602|emb|CAN81554.1| hypothetical protein VITISV_028620 [Vitis vinifera]
          Length = 267

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 76/287 (26%), Gaps = 87/287 (30%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +  +Y +  +    LD+ DLI  +  LL        +  +  +    ++IDE QD
Sbjct: 49  EIGASILGNYSKILRTCNALDYHDLISCSVKLLSDFPE---VFRECQESWKAVVIDEFQD 105

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           TS +Q+ ++R L                +  VGDE Q                       
Sbjct: 106 TSAMQYCLLRILAS-----------HNRITIVGDEDQ----------------------- 131

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     I L  ++RST  IL     +                  +   +       
Sbjct: 132 ----------IRLNKNYRSTRCILEAASSLIQNNMKRC--------QSKKVLTDNSTGSR 173

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V +                           +  S       +   I        I S+  
Sbjct: 174 VTI--------------------------KECHSEEAQCAFVVDKILE------ITSDDS 201

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                   + +L R++    +     R  K  + I  V   R  + +
Sbjct: 202 VAKYSFGSVAILYRRQVSGKVFQTAFRDRKIPFNIHGVAFYRKKVIN 248


>gi|309799179|ref|ZP_07693429.1| DNA-dependent ATPase I and helicase II [Streptococcus infantis
           SK1302]
 gi|308117196|gb|EFO54622.1| DNA-dependent ATPase I and helicase II [Streptococcus infantis
           SK1302]
          Length = 338

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 11/111 (9%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +    +   DF+D+I+ T + L++ D     +  + + I ++ +DE QDTS++
Sbjct: 230 EIVEKYRDDISNHNYFDFDDMILWTIEKLEEDDA---FQRSVSESIKYLFVDEFQDTSVL 286

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           Q E++  L +              +F VGD+ QSIY F G     +    +
Sbjct: 287 QNELVDLLVKG--------KKNPNIFVVGDDDQSIYRFQGVSADNIRDFDK 329


>gi|224418268|ref|ZP_03656274.1| putative recombination protein RecB [Helicobacter canadensis MIT
           98-5491]
          Length = 499

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 66/550 (12%), Positives = 167/550 (30%), Gaps = 75/550 (13%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-FNFSEDDIFKICTQRHE 462
           V  N         A        R ++++ D       L+  L     E++I  +      
Sbjct: 4   VFSNKIDGFVSQEANSHYEGFVRVVINEADKQEISKCLRELLELGAKEEEIAILLFDNDW 63

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD-----FFTLILGAKKGRQQF 517
              + E+++      +      + + +E+  + +F    D     F           ++ 
Sbjct: 64  VVELAEFLETDGFKVVMDTSAKLVFHNEVRALIEFLKYLDSKNPQFCEEFFMLLGLEKES 123

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE----------LEQYPPTIKRAHSA 567
           + R+   + +     L   ++  + S  S ++ +            LE+         S+
Sbjct: 124 LDRYFEILENPPAVILLQVMQFFKISSLSAKKFLEYALGFASVGELLEKVESLQADIVSS 183

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             + +R+MT+H +KGLE   V ++D       + ++        +             KS
Sbjct: 184 ECSGIRLMTIHKSKGLEFNHVLVIDDNKARSRYNNVFFEFKENGVEIQRVFQKSNDLRKS 243

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
            +      I   +   +++    LYV +TRA + + I   S           +       
Sbjct: 244 LDKTYQKAILKEEILKEKDLKNQLYVALTRAKNTMHIMLLSEKGRFDSLGLES------- 296

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                           + + +  +         N P + E    +    ++  + L +  
Sbjct: 297 ----------------LQRGDLKSALEEIKDAINLPKKEERVFFEEASYKRSLEALGTQ- 339

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                                  E      Q    G+ +H +++             +  
Sbjct: 340 ---------------KKMQVIQKEVQEGKIQGIYYGVALHFVMEQKIKNNLDDLV-LLEI 383

Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISG 866
            C K   L   +  +N++    ++L+N      ++      E+     ++  ++  +   
Sbjct: 384 LCNKMGFLMERESLENVIKHCKKILKNSHFIEILTKGKVKCEIPF---LSNGRQKRL--- 437

Query: 867 RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             D + I +   F+ +YK+             +++ Q+  Y + +++    K     + Y
Sbjct: 438 --DLLVIGENEAFVIDYKSG--------MQRESYMTQVLEYMQSVEEIL-QKPTRGFVFY 486

Query: 927 VSE-PKVFII 935
                ++  +
Sbjct: 487 TEGEGRLVEV 496


>gi|126434064|ref|YP_001069755.1| UvrD/REP helicase [Mycobacterium sp. JLS]
 gi|126233864|gb|ABN97264.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. JLS]
          Length = 707

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/467 (12%), Positives = 118/467 (25%), Gaps = 90/467 (19%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
              + L+        +  + LL S F        +  +    +       E         
Sbjct: 107 AARRQLRYFWPRVVGDTSWQLLDSKFSVVAQAANRARVQAATDDVRDLAGEIEWAKASLI 166

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED---------LIINTND 158
                     +  +           + A YE  K ++      D         L+++T  
Sbjct: 167 SPEAYPGAVAQAGRDIPMDAAKVAAVYAGYEALKARH------DGTALLDFDDLLLHTAA 220

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            ++     A +  +        ++DE QD + +Q  V+ +                 L  
Sbjct: 221 AIEND---AAVAAEFRDRYRCFVVDEYQDVTPLQQRVLDAWLG----------PRDDLTV 267

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  Q+IYSF GA P+ +L   R             ++I L   +RST  ++++ ++V 
Sbjct: 268 VGDANQTIYSFTGATPRYLLDFSRRFP--------DAAVIRLERDYRSTPQVVSLANRVI 319

Query: 279 SIPENA---QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           +          L            +       V     V                     
Sbjct: 320 AAARGRMAGSKLHLVGQRPPGPTPAFAEHPDEVAEAAAVAKD------------------ 361

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                            I  ++   T           A +I VL R    + +       
Sbjct: 362 -----------------IRRLLDAGTP----------AAEIAVLYRINAQSEVYEEALTE 394

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--FNFSEDDI 453
                 I+              I+  +   +    ++ D     ++++ L     + +  
Sbjct: 395 ----AGIAFQVRGGEGFFSRQEIRQALVALQRAAERDVDGEVADVVRAVLEPLGLTAEPP 450

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                +                  +     +   + EL   A    P
Sbjct: 451 AGTRARERWEALSALAELVDEEVVLRPGLDLRGLVTELRQRADARHP 497



 Score = 56.1 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 80/327 (24%), Gaps = 39/327 (11%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               E    ++           + +  +  +             D    +L       + 
Sbjct: 390 EALTEAGIAFQVRGGEGFFSRQEIRQALVALQRAAERDVDGEVADVVRAVLEPLGLTAEP 449

Query: 518 -ISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIM 575
                  E  + L                  L+ L++EL Q               V + 
Sbjct: 450 PAGTRARERWEALSALAELVDEEVVLRPGLDLRGLVTELRQRADARHPPVVQG---VTLA 506

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           ++H AKGLE   V+LV          H                                 
Sbjct: 507 SLHAAKGLEWDAVYLVGLADGTLPISHALTHGP--------------------------- 539

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                    EE  RLLYVG+TRA   L +           +      + + V      + 
Sbjct: 540 ----DSEPVEEERRLLYVGITRARVHLTLSWALARAPGGRQGRRPSRFLNGVAPHSAPEA 595

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
            V K +          +  +  T  P    L R ET    +DEQ +       ++     
Sbjct: 596 SVNKPRRARGATPRCRVCNQVLTT-PAAIMLRRCETCSSDIDEQLLAALKEWRLRTSKEL 654

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTF 780
                    D       ESL +D    
Sbjct: 655 GVPAFVVFTDNTLIAIAESLPTDEAAL 681


>gi|301643487|ref|ZP_07243534.1| UvrD/REP helicase [Escherichia coli MS 146-1]
 gi|301078126|gb|EFK92932.1| UvrD/REP helicase [Escherichia coli MS 146-1]
          Length = 715

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 102/331 (30%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S      ++  +     +  L +++
Sbjct: 525 ERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLINGDKKAVTLLDESQLDALLDKL 584

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 585 SGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 46.5 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLINGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|227875855|ref|ZP_03993981.1| hypothetical protein HMPREF0577_1282 [Mobiluncus mulieris ATCC 35243]
 gi|227843603|gb|EEJ53786.1| hypothetical protein HMPREF0577_1282 [Mobiluncus mulieris ATCC 35243]
          Length = 1177

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 113/1111 (10%), Positives = 280/1111 (25%), Gaps = 250/1111 (22%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  F L L+ +     +      +   +++ +      E    +  +    +    ++  
Sbjct: 78   RRAFDLRLDNAVVGDSRSFASAVWGFFNEMRRAAD-CSEVRLLSDAEVLAWMDPWLESNV 136

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                 + + +    Q       +      +K   L       +    K+R +  T +   
Sbjct: 137  PGGFAAAVGTQGFRQN--LLDGLYRVRCVEKQRTLGALHPWVRGILGKLRQQVKTSQSQG 194

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                    A  L   Y +A +                             K   + + +L
Sbjct: 195  GKNPWELDAGSLYEEYLQALEA---------------------------GKHVAQPSLVL 227

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +D+ Q+ + +  E++               +   + AVG    S   + G EP+ + +  
Sbjct: 228  LDDWQNANGLMQEIVCQWAA----------TGTQVVAVGLADLSCNEYRGGEPQALQQLA 277

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            +  Q   +  G+K     L  ++                 +  +    D+  T       
Sbjct: 278  QRLQANLS--GRKVRQKMLTETY---------------ANDRLESFWRDTVNTF------ 314

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             G   T+ LW+ +   H                 L + ++ +   R I   +        
Sbjct: 315  -GVSTTLDLWKPLGEAHPVSQEKPSAEDGLSGVHLIEAANDARQYRFIGRFLQE------ 367

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK-D 420
                     +    + VLV  +     +    + L     +    ++     +       
Sbjct: 368  -VHLFSDPSVPYSQMAVLVNSKAVGHSVCQQLKSL----GVPASLSEATSQINEGRFSAW 422

Query: 421  LMALGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC- 476
            L+ L +   ++  D +   +   L+S  F +    + ++     +          F+   
Sbjct: 423  LLRLLKLACAKTWDFTDFLITDFLQSEFFGWGSARLRQLDDALKDLAYPMPRQSDFSQAA 482

Query: 477  -----------------GISKFQHVIKYIHELI-----------HIAQFCSPHDFFT--- 505
                              +   +   + +                +       + +    
Sbjct: 483  DFESAISAWEMNTNKLGILPWVKEFWEDLLASRPFHNQDLETVFALGDAKRLAELYEVLI 542

Query: 506  -----------------LILGAKKGRQQFISRFGNEVI-------------DVLDEFLNF 535
                              +L    GR + +                     D++ +    
Sbjct: 543  KVQDLWQKDSGNVQMMLWVLWDGLGRGEELRELTFTSELDSIVRDQLNLELDLVMDLFKA 602

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANH---NEVRIMTVHTAKGLESPVVFLVD 592
                EQ        + ++          + + +H   + V I T   A      VV +  
Sbjct: 603  ADWYEQRYPGGDAAVFAKKMLDRSLPTVSVAPHHQSTDAVTITTPIGAASRHWKVVAVAG 662

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                 +  +      +  S+ D     +    + +    +  +    + S   +  R   
Sbjct: 663  LNDGAWPSRSWPGDLLGTSMFD-----LSRDDTGTDCANLEVIKAGFQWSFHADLRR-FL 716

Query: 653  VGMTRASDQLII---------------------------------------------CKH 667
              +TRA++ L++                                                
Sbjct: 717  AAITRATETLVLGTTTGDFESPSPLVLRLADNPAIVVHKDVVGFTPKPEGTENSGAGTAS 776

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI---AYEWSTHHPENTPL 724
                +   SN R     +       +   ++    S  + E     A+  +         
Sbjct: 777  FALLDNPPSNLRDMVARLRILTMLSDAQVQMLGVGSAEQSEAASLLAWLGNAPGSAARAA 836

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ------ 778
              E  +  L      P         +    + +  S +++      ++ +S         
Sbjct: 837  NPENWMGILRPTVVEPAVSAGETTVENKPVFRIRASGMESLLNNPFDTEMSRLGYEDERE 896

Query: 779  ----TFNRGLIIHKLLQVI-----------FTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                    G +IHK+ + +             + + KR+           KL      +N
Sbjct: 897  EEYNAAIIGTLIHKVAEEMGRRHWYGSSCDDKVDKLKREEICEETAGLMEKLLEGSRAEN 956

Query: 824  ------------LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
                        LL  +   L +  + +   C     +  S  +      I  + RID++
Sbjct: 957  WMFINFERRLNYLLKRMNEFLYDHQVPSLFECGYRMTIPDSNNL----GQISYTARIDRV 1012

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV---------- 921
              ++  I + +YKT          +      QL +Y+K   +    + +           
Sbjct: 1013 LFTESGIVLADYKTGSLGNYTKPKVANN--LQLLLYQKAFNE---GRPIGGAPQGLVADA 1067

Query: 922  CLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
              ++ +   K  ++ Q  L      +    P
Sbjct: 1068 AWIVGLRGDKTTVVAQGSLADELTVVKIAKP 1098


>gi|24371068|dbj|BAC22108.1| RecB [Bacteroides thetaiotaomicron]
          Length = 257

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 84/285 (29%), Gaps = 33/285 (11%)

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           LYV  TRA   LII                   +V      D      +       +   
Sbjct: 5   LYVAFTRAGKNLIIWSKKGQKGTMSELLANTLPVVALKEGLDWEEDCYEQGELCPSE--- 61

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                           EE  K   ++              +        S         +
Sbjct: 62  ----------------EEKAKTSTNKLTQKPDKLPVHMESMRHEIEFRQSNRSADFIQGI 105

Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
           E   SD++  +RG ++H L   I T         I         +  +++ + +     +
Sbjct: 106 EEEESDDRFIHRGRMLHTLFSAIET--AEDIDPAIERLI-FEGVIASSEKAEEIREVARK 162

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
              +P +    S   ++ +     I   +K ++ + R D++ +    + + ++K      
Sbjct: 163 AFSSPEIQNWYS-GEWT-LFNECAIIYKEKGVLQTRRPDRVMMKDGQVVVVDFKFGKENL 220

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
           Q        +  Q+  Y ++L      K++   L YV E  +  +
Sbjct: 221 Q--------YNKQVKGYMQLLTKM-GYKNITGYLWYVDEELIVKV 256


>gi|312945475|gb|ADR26302.1| DNA helicase IV [Escherichia coli O83:H1 str. NRG 857C]
          Length = 684

 Score = 98.5 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 45.3 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|162138455|ref|YP_540044.2| DNA helicase IV [Escherichia coli UTI89]
 gi|306812591|ref|ZP_07446784.1| DNA helicase IV [Escherichia coli NC101]
 gi|294493600|gb|ADE92356.1| helicase IV [Escherichia coli IHE3034]
 gi|305853354|gb|EFM53793.1| DNA helicase IV [Escherichia coli NC101]
 gi|307627618|gb|ADN71922.1| DNA helicase IV [Escherichia coli UM146]
 gi|323953335|gb|EGB49201.1| UvrD/REP helicase [Escherichia coli H252]
 gi|323958262|gb|EGB53971.1| UvrD/REP helicase [Escherichia coli H263]
          Length = 684

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 45.3 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|300920996|ref|ZP_07137384.1| UvrD/REP helicase [Escherichia coli MS 115-1]
 gi|300412042|gb|EFJ95352.1| UvrD/REP helicase [Escherichia coli MS 115-1]
 gi|324019098|gb|EGB88317.1| UvrD/REP helicase [Escherichia coli MS 117-3]
          Length = 715

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +     +  L +++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKL 584

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 585 SGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|288929578|ref|ZP_06423422.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329083|gb|EFC67670.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 900

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 102/302 (33%), Gaps = 36/302 (11%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               YE+ K++N ++DFEDL++ T D L       +      +    + +DEVQD + +Q
Sbjct: 229 FAKQYEDYKRENKLVDFEDLLLLTYDALVADVTGVY------RRYAWLQVDEVQDLNPLQ 282

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ +LT              T+  +GDE+Q+I+SF GA+   + + +R          
Sbjct: 283 LAIVDALTAK---------ENPTVMFLGDEQQAIFSFMGAKLDTLNQLRRR--------- 324

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               +  L ++ RS   +L V +        A+ +       +    +     G      
Sbjct: 325 CGAHVHHLSVNHRSPKYLLNVFNT------YAKAMLNIDERLLPEADNSDMGTGNELQVV 378

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI-SNMIGTDTIFSNGKKRVI 371
                     +  + +      S  + ++  + A R A  +   +            + +
Sbjct: 379 SSNVLDTEYKDVARLAGNLQTQSPNETTAIIVNANRDADDLSRALHAQGLSHFKVSGQDL 438

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A   + L+    +               K       R    +  A   + AL R  +  
Sbjct: 439 FASPEVKLLFAHLNILANAHNFIAWARLLK-----GLRVFEGNAAARNFVQALLRCAMLP 493

Query: 432 ED 433
            D
Sbjct: 494 TD 495



 Score = 44.9 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 34/137 (24%), Gaps = 34/137 (24%)

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                 Q     LQ  I EL                 + + T+H AKGLE   V + D  
Sbjct: 773 LAGDEAQALVQQLQAHIMELNTLKEADLCGSGFIAERIYVTTIHKAKGLEFDNVLIFDAV 832

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              + +                                        +    E  R  YV 
Sbjct: 833 DGRYPN----------------------------------FYTRTDERQTSEDARKFYVA 858

Query: 655 MTRASDQLIICKHSNTS 671
           MTRA  +L +    +  
Sbjct: 859 MTRAKRRLFVSWALSRE 875


>gi|284043265|ref|YP_003393605.1| ATP-dependent nuclease subunit B-like protein [Conexibacter woesei
           DSM 14684]
 gi|283947486|gb|ADB50230.1| ATP-dependent nuclease subunit B-like protein [Conexibacter woesei
           DSM 14684]
          Length = 986

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 77/693 (11%), Positives = 174/693 (25%), Gaps = 87/693 (12%)

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +               +        + G   L        +       E+  +    +  
Sbjct: 233 ARTFAELSQIATEVQELPALDDWYDEAGRAPLHALERGLFEPAAARDAEAGDAVRLLVAG 292

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
              A I    +A T+  ++G                +I V++R    +  +         
Sbjct: 293 GERAEI--ELVAATVLELLGDGVPGE----------EIAVVLRTPARSASLVEQV---FG 337

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV--CMLKSPLF--NFSEDDIF 454
            Y I    + R  L      + L+AL R  L   D         L++P         D  
Sbjct: 338 AYAIPHTLDWRVPLAHTALGRGLLALARCALLPADARPADLLAYLRTPGRLQRLELADRL 397

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI----LGA 510
           ++  +R    ++ E  + +           +  +                       +  
Sbjct: 398 ELTVRRRALLSMEEARRAWEEARGGWPLRELDRLRGAAADGPAALLGALAREARTLFVAP 457

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-------QYPPTIKR 563
            +G+ + +          L   L       + + +  +     LE            +  
Sbjct: 458 HRGQARVLDAAEEADARALSALLRALEELGELAAAEPRRAAELLEPEALLAALGELEVSL 517

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             +A    V +      +      V +       F      +  +   +           
Sbjct: 518 GATAREGAVLVADPLAIRARRFDTVIVCGLQEGEFPRPAHPEPFLSDDV----------- 566

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
             +   N V+ L   L++    +   L Y   +R   +LI+       +   +    + D
Sbjct: 567 --RRELNAVAGLRLPLREDALADERYLFYATASRPRRRLILSCRDADEDGNPALPSFFVD 624

Query: 684 MVYDS-FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            V        ER + +              E         P E    I  L +      +
Sbjct: 625 DVRALLRELPERHRPLSAVTWPLDAAPTDAERERAEALAAPRELPHPIGSLSEAATALLR 684

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV---------- 792
               +     E Y   P     + +   E    D +   RG  IH +L+           
Sbjct: 685 QREVLSAGALERYARCPVRWFVESELQPERFEPDPEAMARGSCIHSVLERTLARVSWPIA 744

Query: 793 ---IFTLPEHKRKNFIT---SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY 846
              +  + +  R+       ++         A     +   + RLL +     A +  ++
Sbjct: 745 VAELPAIEQVVREVVAEEASAFTLGRGAAAQAAAAHEIAADVLRLLAHE--AEAEAGGAF 802

Query: 847 SEVSVSGKINCPK-----------------------KDIIISGRIDQISISQ-QNIFIFE 882
               +  +                            + + + G ID++ +       + +
Sbjct: 803 RPAELELRFGMGDESALPALELTSAEPGDAAGGAPAEPLRLRGVIDRVDLDGAGRALVRD 862

Query: 883 YKTHHHVPQEI-EHIPYTHIAQLSIYEKILKDS 914
           YK+    P             Q+++Y   +++ 
Sbjct: 863 YKSGRRQPSWPVAKWASEDQLQVALYMVAVREL 895


>gi|262039976|ref|ZP_06013243.1| helicase IV [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259042681|gb|EEW43685.1| helicase IV [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 426

 Score = 98.5 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 86/282 (30%), Gaps = 39/282 (13%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
           P      SD     +L +++      +K    +        E  + L    F        
Sbjct: 33  PTISKLESDTAARHALLLKSWQKQCQEKKAQAKGWRLWLEEEMGWQLPEGDF-------- 84

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL----TLAKYLNAHY 137
                +++ ++     ++                     ++          L   L   +
Sbjct: 85  --WQDKKVQRRMASRLDRWVSLM-RMHGGSQAEMIAGAPEAVRDLFSKRVKLMSPLMKDW 141

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           + A K    +DF  LI    ++L K         +      HIL+DE QD S  +  ++ 
Sbjct: 142 KAALKAENAVDFSGLIHQAVNILDK--------GRFVSPWKHILVDEFQDISPQRASLLA 193

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
           +L           +S  TLFAVGD+ Q+IY F GA+                    +   
Sbjct: 194 ALRR--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFNHYF--------GEGDC 237

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             L  ++R    I  + +       +      +S T    ++
Sbjct: 238 CALDTTYRFNGRIGEIANGFIQQNPHQLSKPLNSLTAGDKKA 279



 Score = 39.1 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 22/91 (24%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MT+H +KG ++  V ++       +     +  IM                        
Sbjct: 333 FMTIHASKGQQADFVIVLGLQEGEDAFPAPARESIME----------------------Q 370

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            L+   +     E  RLLYV +TRA  ++ +
Sbjct: 371 ALLPQPEDFPDAEERRLLYVALTRARHRVWL 401


>gi|307150933|ref|YP_003886317.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
 gi|306981161|gb|ADN13042.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
          Length = 602

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 77/541 (14%), Positives = 149/541 (27%), Gaps = 150/541 (27%)

Query: 134 NAHYEEAKKK----NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              Y    K+       + F  +I+   +L +K      I          +++DE QDT+
Sbjct: 181 FETYVREVKEKILNRQYIPFNAIILLILELFRKYP---NILEFYKNYFPTVIVDEFQDTN 237

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           ++ W +++ +  +             +  +GD  Q IY F GA PK +   +        
Sbjct: 238 ILSWTLLKKIISNDS----------RVIFIGDSLQRIYGFIGAIPKLMREAEVKY----- 282

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                  II L  ++R            F                +R  +  I       
Sbjct: 283 ----NMEIITLTKNYR------------FKDNPE----MLQLDKNLRLNAENIQNP---- 318

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                        N +   +          ++    A++I   I ++       S     
Sbjct: 319 ---------TIDKNAEIIFFNL--------TNQLEEAKKIIDIIKDLQNNHLADSCK--- 358

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 I +LV+ R     I  + + L+ +      G       D+L      +L     
Sbjct: 359 ------IALLVKNR--GKNIDKILKVLQENKIAYFYGLFSDEEYDYLKFHKECSLLFIEH 410

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
            ++  +             S+  + K+     E+  + E  +K         Q ++K + 
Sbjct: 411 LKKVHV------------ISQKTLSKLYDTISESIFLKENKEKLT------LQSLMKLLK 452

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
              +       ++F +        R  F +    + ++ LDE                  
Sbjct: 453 VFFYRINTE--YNFLSFEDKIIFIRDTFENNALKQNMEYLDE------------------ 492

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
                                 V + T+H AKGLE   V + D              +  
Sbjct: 493 ---------------------NVIVATIHGAKGLEWDYVIMPDMEQYSNPSFQGLCKNCN 531

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
              N+                          ++   E   + YVG+TRA  Q+     + 
Sbjct: 532 YRNNNCNIQIDP-----------------NNETKFLEELSVFYVGVTRARRQIFFSASNT 574

Query: 670 T 670
            
Sbjct: 575 R 575


>gi|307108879|gb|EFN57118.1| hypothetical protein CHLNCDRAFT_51440 [Chlorella variabilis]
          Length = 418

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 19/136 (13%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
              +   W+   +     H+L+DE QDT+  Q+E++R LT               LF VG
Sbjct: 158 NSEEERRWVEDLVCWFERHMLVDEFQDTNTPQYELVRLLTL----------PQGNLFVVG 207

Query: 221 DEKQSIYSFHGAEPKRV-LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           D  QSIY + GA+   +  + K                  L  ++RS+  I+     + S
Sbjct: 208 DPDQSIYEWRGADMDNMTCQLKIDYP--------DIQTFILKNNYRSSERIVQTASALIS 259

Query: 280 IPENAQGLSEDSTTTI 295
             ++       +   +
Sbjct: 260 ANKDWGRARMQAQRPL 275


>gi|306819136|ref|ZP_07452850.1| possible ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
 gi|304648112|gb|EFM45423.1| possible ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239]
          Length = 1177

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 112/1111 (10%), Positives = 281/1111 (25%), Gaps = 250/1111 (22%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  F L L+ +     +      +   +++ +      E    +  +    +    ++  
Sbjct: 78   RRAFDLRLDNAVVGDSRSFASAVWGFFNEMRRAAD-CSEVRLLSDAEVLAWMDPWLESNV 136

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                 + + +    Q       +      +K   L       +    K+R +  T +   
Sbjct: 137  PGGFAAAVGTQGFRQN--LLDGLYRVRCVEKQRTLGALHPWVRGILGKLRQQVKTSQSQG 194

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                    A  L   Y +A +                             K   + + +L
Sbjct: 195  GKNPWELDAGSLYEEYLQALEA---------------------------GKHVAQPSLVL 227

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +D+ Q+ + +  E++               +   + AVG    S   + G EP+ + +  
Sbjct: 228  LDDWQNANGLMQEIVCQWAA----------TGTQVVAVGLADLSCNEYRGGEPQALQQLA 277

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            +  Q   +  G+K     L  ++                      +++   +  R   + 
Sbjct: 278  QRLQANLS--GRKVRQKMLTETY----------------------VNDRLESFWRDTVNT 313

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             G   T+ LW+ +   H                 L + ++ +   R I   +        
Sbjct: 314  FGVSTTLDLWKPLGEAHPVPQEKPSAEDGLSGVHLIEAANDARQYRFIGRFLQE------ 367

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK-D 420
                     +    + VLV  +     +    + L     +    ++     +       
Sbjct: 368  -VHLFSDPSVPYSQMAVLVNSKAVGHSVCQQLKSL----GVPASLSEATSQINEGRFSAW 422

Query: 421  LMALGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC- 476
            L+ L +   ++  D +   +   L+S  F +    + ++     +          F+   
Sbjct: 423  LLRLLKLACAKTWDFTDFLITDFLQSEFFGWGSARLRQLDDALKDLAYPMPRQSDFSQAA 482

Query: 477  -----------------GISKFQHVIKYIHELI-----------HIAQFCSPHDFFT--- 505
                              +   +   + +                +       + +    
Sbjct: 483  DFESAISAWEMNTNKLGILPWVKEFWEDLLASRPFHNQDLETVFALGDAKRLAELYEVLI 542

Query: 506  -----------------LILGAKKGRQQFISRFGNEVI-------------DVLDEFLNF 535
                              +L    GR + +                     D++ +    
Sbjct: 543  KVQDLWQKDSGNVQMMLWVLWDGLGRGEELRELTFTSELDSIVRDQLNLELDLVMDLFKA 602

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANH---NEVRIMTVHTAKGLESPVVFLVD 592
                EQ        + ++          + + +H   + V I T   A      VV +  
Sbjct: 603  ADWYEQRYPGGDAAVFAKKMLDRSLPTVSVAPHHQSTDAVTITTPIGAASRHWKVVAVAG 662

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                 +  +      +  S+ D     +    + +    +  +    + S   +  R   
Sbjct: 663  LNDGAWPSRSWPGDLLGTSMFD-----LSRDDTGTDCANLEVIKAGFQWSFHADLRR-FL 716

Query: 653  VGMTRASDQLII---------------------------------------------CKH 667
              +TRA++ L++                                                
Sbjct: 717  AAITRATETLVLGTTTGDFESPSPLVLRLADNPAIVVHKDVVGFTPKPEGTENSGAGTAS 776

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI---AYEWSTHHPENTPL 724
                +   SN R     +       +   ++    S  + E     A+  +         
Sbjct: 777  FALLDNPPSNLRDMVARLRILTMLSDAQVQMLGVGSAEQSEAASLLAWLGNAPGSAARAA 836

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ------ 778
              E  +  L      P         +    + +  S +++      ++ +S         
Sbjct: 837  NPENWMGILRPTVVEPAVSAGETTVENKPVFRIRASGMESLLNNPFDTEMSRLGYEDERE 896

Query: 779  ----TFNRGLIIHKLLQVI-----------FTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                    G +IHK+ + +             + + KR+           KL      +N
Sbjct: 897  EEYNAAIIGTLIHKVAEEMGRRHWYGSSCDDKVDKLKREEICEETAGLMEKLLEGSRAEN 956

Query: 824  ------------LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
                        LL  +   L +  + +   C     +  S  +      I  + RID++
Sbjct: 957  WMFINFERRLNYLLKRMNEFLYDHQVPSLFECGYRMTIPDSNNL----GQISYTARIDRV 1012

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV---------- 921
              ++  I + +YKT          +      QL +Y+K   +    + +           
Sbjct: 1013 LFTESGIVLADYKTGSLGNYTKPKVANN--LQLLLYQKAFNE---GRPIGGAPQGLVADA 1067

Query: 922  CLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
              ++ +   K  ++ Q  L      +    P
Sbjct: 1068 AWIVGLRGDKTTVVAQGSLADELTVVKIAKP 1098


>gi|300896343|ref|ZP_07114885.1| UvrD/REP helicase [Escherichia coli MS 198-1]
 gi|300359754|gb|EFJ75624.1| UvrD/REP helicase [Escherichia coli MS 198-1]
          Length = 715

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 568



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|254234505|ref|ZP_04927828.1| hypothetical protein PACG_00364 [Pseudomonas aeruginosa C3719]
 gi|126166436|gb|EAZ51947.1| hypothetical protein PACG_00364 [Pseudomonas aeruginosa C3719]
          Length = 530

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 107/340 (31%), Gaps = 35/340 (10%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                +       A ++   ++  ++ F+         L +R     +         H+L
Sbjct: 215 REKIFVEAMALFWARFQALLREEGLMTFD----AAFQQLGERMAGGALAETALAPFTHLL 270

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S      +++L            +  +L A+GD+ QSIY + G+ P+  +   
Sbjct: 271 IDEFQDVSPQIVLWLQALHRRLAT----QGTAPSLMAIGDDWQSIYGWRGSSPELFIDFD 326

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R    R    G+K +++ L  ++RS   I+   +KV +     Q  +         R+ R
Sbjct: 327 RHFPSR--GRGRKSALLVLETNYRSVEPIIRDGEKVLAGVRFKQDKT--------CRAFR 376

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             Q G   +         +Q         +  +      S+   A  +    +  +    
Sbjct: 377 PIQPGDHGVKLVQRFDLRAQLPKLLAEIRAQCEHAAARESSERTAVLLLSRRNEPLQAIQ 436

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +   R +  K + +               R      ++++V +D      H     L
Sbjct: 437 AELD---RALPVKGMTIH--------------RAKGLQAEVAIVVDDCLPGEKHPLRNAL 479

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            A   F  +  D       L+      +      +   R 
Sbjct: 480 YAASGFFRNSYDQAMEDESLRLAYVAITRGVSRVLWYTRK 519


>gi|254478564|ref|ZP_05091938.1| UvrD/REP helicase subfamily protein [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035493|gb|EEB76193.1| UvrD/REP helicase subfamily protein [Carboxydibrachium pacificum
           DSM 12653]
          Length = 596

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 77/527 (14%), Positives = 142/527 (26%), Gaps = 146/527 (27%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N  + F  +++ T +L KK      I          +++DE QDT+++ W +++ L  + 
Sbjct: 190 NGYITFNAILLLTIELFKKYPA---ILKFYRTLFPIVIVDEFQDTNILSWTLLQLLIGED 246

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                       +  +GD  Q IY F GA P  +                    IEL  +
Sbjct: 247 AE----------VIFIGDPLQRIYDFIGAIPDLMTEATTKY---------DLHKIELKTN 287

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +R            F   +    L       IR  +         ++      Q   Q  
Sbjct: 288 YR------------FKNNQQLLLL----DKNIRENAKNPSSPSIQEIANIKTFQFSDQTE 331

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                                 A+ +      ++G D            A  I +LV++R
Sbjct: 332 E---------------------AKGVLSLCQEILGNDP-----------ASKIAILVKQR 359

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                I  + +  K+          +F     L   +      F                
Sbjct: 360 --GRNIDEILKAFKD---------TKFPFFYALYGDEEKEYIEF---------------- 392

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                          Q+   E +               Q   K +  +   +     +  
Sbjct: 393 --------------HQKSLKEFLDVVSNSGNKINKRIIQRFFKKVKNIFKNSDDEIYNSL 438

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              IL      + FI      + + + E +   L        SL++ +  +E        
Sbjct: 439 L--ILLETFLNRIFIEFSFLSMEEKI-ELIKDVLE-----SRSLKQYLGYVES------- 483

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  ++ I TVH  KGLE   + L D     F +     +  +    +D  I   + 
Sbjct: 484 -------KIIISTVHGGKGLEWDYIILPDMEQYSFPN--YPGLCGICQFKNDCKINWNLA 534

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                            +        + YV +TRA  ++     +  
Sbjct: 535 SRIPD-----------FERRFYSELSVFYVAVTRAKKEVFFTYSNKR 570


>gi|227884078|ref|ZP_04001883.1| helicase IV [Escherichia coli 83972]
 gi|300978349|ref|ZP_07174222.1| UvrD/REP helicase [Escherichia coli MS 45-1]
 gi|301047779|ref|ZP_07194833.1| UvrD/REP helicase [Escherichia coli MS 185-1]
 gi|26107384|gb|AAN79567.1|AE016758_171 Helicase IV [Escherichia coli CFT073]
 gi|227838830|gb|EEJ49296.1| helicase IV [Escherichia coli 83972]
 gi|300300342|gb|EFJ56727.1| UvrD/REP helicase [Escherichia coli MS 185-1]
 gi|300409694|gb|EFJ93232.1| UvrD/REP helicase [Escherichia coli MS 45-1]
 gi|307552794|gb|ADN45569.1| DNA helicase IV [Escherichia coli ABU 83972]
 gi|315291182|gb|EFU50542.1| UvrD/REP helicase [Escherichia coli MS 153-1]
          Length = 715

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 568



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|15596602|ref|NP_250096.1| helicase [Pseudomonas aeruginosa PAO1]
 gi|9947352|gb|AAG04794.1|AE004570_2 probable helicase [Pseudomonas aeruginosa PAO1]
          Length = 530

 Score = 98.1 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 107/340 (31%), Gaps = 35/340 (10%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                +       A ++   ++  ++ F+         L +R     +         H+L
Sbjct: 215 REKIFVEAMALFWARFQALLREEGLMTFD----AAFQQLGERMAGGALAETALAPFTHLL 270

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S      +++L            +  +L A+GD+ QSIY + G+ P+  +   
Sbjct: 271 IDEFQDVSPQIVLWLQALHRRLAT----QGTAPSLMAIGDDWQSIYGWRGSSPELFIDFD 326

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R    R    G+K +++ L  ++RS   I+   +KV +     Q  +         R+ R
Sbjct: 327 RHFPSR--GRGRKSALLVLETNYRSVEPIIRDGEKVLAGVRFKQDKT--------CRAFR 376

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             Q G   +         +Q         +  +      S+   A  +    +  +    
Sbjct: 377 PIQPGDHGVKLVQRFDLRAQLPKLLAEIRAQCEHAAARESSERTAVLLLSRRNEPLQAIQ 436

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +   R +  K + +               R      ++++V +D      H     L
Sbjct: 437 AELD---RALPVKGMTIH--------------RAKGLQAEVAIVVDDCLPGEKHPLRNAL 479

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            A   F  +  D       L+      +      +   R 
Sbjct: 480 YAASGFFRNSYDQAMEDESLRLAYVAITRGVSRVLWYTRK 519


>gi|331657029|ref|ZP_08357991.1| helicase IV (75 kDa helicase) [Escherichia coli TA206]
 gi|222032686|emb|CAP75425.1| Helicase IV [Escherichia coli LF82]
 gi|331055277|gb|EGI27286.1| helicase IV (75 kDa helicase) [Escherichia coli TA206]
          Length = 684

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 45.3 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|85059009|ref|YP_454711.1| DNA helicase IV [Sodalis glossinidius str. 'morsitans']
 gi|84779529|dbj|BAE74306.1| DNA helicase IV [Sodalis glossinidius str. 'morsitans']
          Length = 684

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 71/181 (39%), Gaps = 24/181 (13%)

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           + +     + L   L   +++A K+   +DF+ LI    D+L+K         +      
Sbjct: 381 LREHFQKRIRLLAPLLKAWKQALKEEGSVDFDGLIHQAVDILQK--------GRFVSPWK 432

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HIL+DE QD S  +  +I +L +         +S  +LFAVGD+ Q+IY F GAE   + 
Sbjct: 433 HILVDEFQDISPQRARLITALCQ--------QNSATSLFAVGDDWQAIYRFSGAELTLIT 484

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                              + L  ++R    I  V ++             +S T    +
Sbjct: 485 AFGANF--------GGGEPLALDTTYRFNQRIGKVANRFVQQNPFQLAKPLNSLTRGGKK 536

Query: 299 S 299
           +
Sbjct: 537 A 537



 Score = 43.4 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 99/354 (27%), Gaps = 38/354 (10%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            + +      D    +  A  LA R+   +  +       ++               R R
Sbjct: 331 EELDWEVPEGDFWQNDKLAHRLAGRLERWVGLIRSHGGSQADMVDAAPDELREHFQKRIR 390

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML-- 441
              PL+    + LK +  +   G     +      + +      ++ +  D+S       
Sbjct: 391 LLAPLLKAWKQALKEEGSVDFDGLIHQAVDILQKGRFVSPWKHILVDEFQDISPQRARLI 450

Query: 442 --------KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHE 490
                    + LF   +D          E   +  +   F               + I +
Sbjct: 451 TALCQQNSATSLFAVGDDWQAIYRFSGAELTLITAFGANFGGGEPLALDTTYRFNQRIGK 510

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           + +     +P      +    +G ++ +        D LD  L+        +   L   
Sbjct: 511 VANRFVQQNPFQLAKPLNSLTRGGKKAVQILP---EDQLDALLDKLSGFVTPTQRILVLA 567

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                +     K A    H  +  MT+H +KG ++  V +V                   
Sbjct: 568 RYHHLRPALLAKAATRWPHLHIDFMTIHASKGQQAEYVIIVGVNDGR------------- 614

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                       P     + I   L+   +     E  RLLYV +TRA +Q+ +
Sbjct: 615 ---------DGFPAPARESIIEQVLLPRPEDYPDAEERRLLYVALTRAKEQVWL 659


>gi|215486080|ref|YP_002328511.1| DNA helicase IV [Escherichia coli O127:H6 str. E2348/69]
 gi|312968979|ref|ZP_07783186.1| helicase IV [Escherichia coli 2362-75]
 gi|215264152|emb|CAS08496.1| DNA helicase IV [Escherichia coli O127:H6 str. E2348/69]
 gi|312286381|gb|EFR14294.1| helicase IV [Escherichia coli 2362-75]
          Length = 684

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 44.9 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|254239757|ref|ZP_04933079.1| hypothetical protein PA2G_00382 [Pseudomonas aeruginosa 2192]
 gi|126193135|gb|EAZ57198.1| hypothetical protein PA2G_00382 [Pseudomonas aeruginosa 2192]
          Length = 530

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 107/340 (31%), Gaps = 35/340 (10%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                +       A ++   ++  ++ F+         L +R     +         H+L
Sbjct: 215 REKIFVEAMALFWARFQALLREEGLMTFD----AAFQQLGERMAGGALAETALAPFTHLL 270

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S      +++L            +  +L A+GD+ QSIY + G+ P+  +   
Sbjct: 271 IDEFQDVSPQIVLWLQALHRRL----ANQGTAPSLMAIGDDWQSIYGWRGSSPELFIDFD 326

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R    R    G+K +++ L  ++RS   I+   +KV +     Q  +         R+ R
Sbjct: 327 RHFPSR--GRGRKSALLVLETNYRSVEPIIRDGEKVLAGVRFKQDKT--------CRAFR 376

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             Q G   +         +Q         +  +      S+   A  +    +  +    
Sbjct: 377 PIQPGDHGVKLVQRFDLRAQLPKLLAEIRAQCEHAAARESSERTAVLLLSRRNEPLQAIQ 436

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +   R +  K + +               R      ++++V +D      H     L
Sbjct: 437 AELD---RALPVKGMTIH--------------RAKGLQAEVAIVVDDCLPGEKHPLRNAL 479

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            A   F  +  D       L+      +      +   R 
Sbjct: 480 YAASGFFRNSYDQAMEDESLRLAYVAITRGVSRVLWYTRK 519


>gi|309799181|ref|ZP_07693431.1| DNA-dependent ATPase I and helicase II, putative [Streptococcus
           infantis SK1302]
 gi|308117198|gb|EFO54624.1| DNA-dependent ATPase I and helicase II, putative [Streptococcus
           infantis SK1302]
          Length = 786

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 66/446 (14%), Positives = 140/446 (31%), Gaps = 87/446 (19%)

Query: 529 LDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSAN-----HNEVRIMTVHTAKG 582
           L+E     L         +++  +++L             +      N V++MT H +KG
Sbjct: 13  LNELYKLMLTECLIHPKLTVKGFLNQLSALQEMRISLPIEDISGSPSNCVQLMTAHGSKG 72

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   VF++         +                         +    ++   ++  + 
Sbjct: 73  LEFEHVFIMKCNDGKKKSESWPGGE-------------NNSGRFAYPPSLNGKDENESQL 119

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            +EE  RL YV MTRA   L +    +++          + +       DE        +
Sbjct: 120 KEEENRRLFYVAMTRAKKVLHLSYSDDSTKT--------HFINEFEEFIDEVDVTESFED 171

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
             + DE +  +++         E   ++  L    K P                     +
Sbjct: 172 CQSVDEVVIPKFTNDVLNEIFDELSLSVSTLNAFLKCP---------------------L 210

Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---------------FTLPEHKRKNFITS 807
                  L+     N+    G IIH++L+ I                 L   +      S
Sbjct: 211 SFYLNKGLKLPSETNEAMVFGSIIHEVLEKIYISADGSQISELTSKTVLSLEEALALFES 270

Query: 808 YCTKNAKLWPAKEY-KNLLLSITRLLENPMMTT-AMSCDSYS-EVSVSG---------KI 855
              + +    +    K+      R++EN       ++    + E+ + G          +
Sbjct: 271 IFEEKSYQLSSDRIKKDDYDRGIRIIENLYKKAGYLNDGVIAVEIPIQGIRLGDILNTTV 330

Query: 856 NCPK-KDIIISGRIDQISISQQNIFIFEYKTHH--------HVPQEIEHIPYTHIAQLSI 906
           +     DI ++G+ID+I      + + +YKT +          P E   +   +  Q   
Sbjct: 331 DLSGISDIELNGKIDKIEYDGNIVRLIDYKTGNAENGKKKLVPPSEKAPLGGDYWRQAVF 390

Query: 907 YEKILKDS---YPNKSLVCLLIYVSE 929
           Y  + K++     +K ++   ++V +
Sbjct: 391 YYILFKNAGINISDKEILVKYVFVED 416



 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 77/261 (29%), Gaps = 30/261 (11%)

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
             P+    E  E                S +   ++ P  +    +    +    S  + 
Sbjct: 481 TAPKFDNTEALEIATFQQTRGNYKSLSVSKLNRFLSCPKSVYFDDVLQLSQPAGLSAGTK 540

Query: 777 NQTFN-----------RGLIIHKLLQVI---FTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
            +               G  IH+ ++ I       E   + +  S  +   ++      +
Sbjct: 541 EKAAKVTTKHAPTGPVFGTAIHETMEQIYKEDLQLEEAIEYYDNSLHSHQEEIIDTMSVE 600

Query: 823 NLLLSITRLLENPMMTTAMSCDSYSE-VSVSGKINCPKKD-IIISGRIDQISISQQNIFI 880
            L     RLL N +    +      E V +  ++     D  +I+G ID++      I +
Sbjct: 601 ELKEYGHRLLTN-LFKHYIPISLKGEHVYLEKELRVKLGDKHLINGIIDKLEFDNDFIRV 659

Query: 881 FEYKTHHHVPQEIEHIPYT-HIAQLSIYEKILK---DSY-PNKSLVCLLIYVSEP----- 930
            +YKT        E      +  Q   Y  +L+   +     K +    I++ +      
Sbjct: 660 VDYKTGSTQRGVEELAVGRDYWRQAVFYNILLENSSEIDTTGKRIETQYIFLDDDDAKVG 719

Query: 931 ---KVFIIPQNKLNKAFAEIS 948
                  + +  ++    +I 
Sbjct: 720 YSIHTVNVTKEDIDLVLTKIQ 740


>gi|281178086|dbj|BAI54416.1| DNA helicase IV [Escherichia coli SE15]
          Length = 684

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 44.9 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|330910735|gb|EGH39245.1| DNA helicase 4 [Escherichia coli AA86]
          Length = 684

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 44.9 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|327312374|ref|YP_004327811.1| UvrD/REP helicase [Prevotella denticola F0289]
 gi|326945342|gb|AEA21227.1| UvrD/REP helicase [Prevotella denticola F0289]
          Length = 896

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 63/401 (15%), Positives = 121/401 (30%), Gaps = 78/401 (19%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPD--LKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           L     T         I +   KK  +  + +    +Q+   +        K+       
Sbjct: 163 LHPESFTDDDREAIRHICKSQKKKYDEQAVVDIYHHAQEYMDEADVPGLDGKLADRIRVL 222

Query: 127 LTLAKYLNAH-YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             L K   A  Y   K  N +LDFEDL++ T D+ +             +    I +DEV
Sbjct: 223 --LWKMYYARCYARYKADNHLLDFEDLLLRTYDIYRSDPAC--------RRYPWIQVDEV 272

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +Q  +I  LT D         +  T+  +GDE+Q+I+SF GA+ + +   K    
Sbjct: 273 QDLNAMQLAIIDLLTAD---------NDPTVMYLGDEQQAIFSFMGAKVETLTLLK---- 319

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                   K  I  L  + RS   +L     VF+     Q   +     +    +     
Sbjct: 320 -----MRCKGHIHHLQRNHRSPKYLLN----VFNDYAEKQLKIDRELLPVSDNDTPAAPG 370

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               +    +     +   +        +                               
Sbjct: 371 DLRIIHSTTIEAERQEVTEEARRLYEQDNDERT--------------------------- 403

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                       V+V    D   I+           ++        L D   +K L+A  
Sbjct: 404 -----------AVIVSANSDADRISETM----TQAGLTHFKVSGRDLFDTPDVKLLLAHL 448

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             + ++ + +++  ++K  +  F    + +    +     +
Sbjct: 449 SVLANEHNSIAWTRIMKG-VRAFPSHALARRFNWKLRQLAL 488



 Score = 42.6 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 60/220 (27%), Gaps = 54/220 (24%)

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVID 527
           Q+ A     K Q     +          +    +  +L         ++  + +     D
Sbjct: 693 QQLAFIRHPKVQPFANVLCSNYGSLYQEAVRRLY--VLTEDDEPALVRELSAAYDTLRAD 750

Query: 528 VL-DEF--LNFTLRNEQNSY-----------SSLQELISELEQYPPTIKRAHSANHNEVR 573
            L  E   L++ LR  +                L   + ++            +    V 
Sbjct: 751 NLVGEIPRLDYILRYLRMDLLTEETVTNALAPQLSRYMMDVNTLKEADFCNSRSIRERVY 810

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           + TVH AKGLE   V + D     + + + K                             
Sbjct: 811 VTTVHKAKGLEFDNVIIYDAADGRYPNVYNKT---------------------------- 842

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                  +   EE  R  YV M+RA  +L I      ++ 
Sbjct: 843 -------RQQDEEDARKFYVAMSRAKRRLYIAYAMQMTDR 875


>gi|320196549|gb|EFW71172.1| DNA helicase IV [Escherichia coli WV_060327]
          Length = 684

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 44.9 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
 gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 62/401 (15%), Positives = 121/401 (30%), Gaps = 78/401 (19%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPD--LKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           L     T         I +   K+  +  + +    +Q+   +        K+       
Sbjct: 163 LHPESFTDDDREAIRHICKSQKKEYDEQAVVDIYYHAQEYMDEADVPGLDGKLADRIRVL 222

Query: 127 LTLAKYLNAH-YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
             L K   A  Y   K  N +LDFEDL++ T D+ +             +    I +DEV
Sbjct: 223 --LWKMYYARCYARYKADNHLLDFEDLLLRTYDIYRSDPAC--------RRYPWIQVDEV 272

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +Q  +I  LT D         +  T+  +GDE+Q+I+SF GA+ + +   K    
Sbjct: 273 QDLNSMQLAIIDLLTAD---------NDPTVMYLGDEQQAIFSFMGAKVETLTLLK---- 319

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                   K  I  L  + RS   +L     VF+     Q   +     +    +     
Sbjct: 320 -----MRCKGHIHHLQRNHRSPKYLLD----VFNDYAAKQLKIDRELLPVSDNDTPAAPG 370

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
               +    +     +   +        +                               
Sbjct: 371 DLRIIHSTTIEAERQEVTEEARRLYEQDNDERT--------------------------- 403

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
                       V+V    D   I+           ++        L D   +K L+A  
Sbjct: 404 -----------AVIVSANSDADRISETM----TQAGLTHFKVSGRDLFDTPDVKLLLAHL 448

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
             + ++ + +++  ++K  +  F    + +    +     +
Sbjct: 449 SVLANEHNSIAWTRIMKG-VRAFPSHALARRFNWKLRQLAL 488



 Score = 42.6 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 60/220 (27%), Gaps = 54/220 (24%)

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK---GRQQFISRFGNEVID 527
           Q+ A     K Q     +          +    +  +L         ++  + +     D
Sbjct: 693 QQLAFIRHPKVQPFANVLCSNYGSLYREAVRRLY--VLTEDDEPALVRELSAAYDTLRAD 750

Query: 528 VL-DEF--LNFTLRNEQNSY-----------SSLQELISELEQYPPTIKRAHSANHNEVR 573
            L  E   L++ LR  +                L   + ++            +    V 
Sbjct: 751 NLVGEIPRLDYILRYLRMDLLTEETVTNALAPQLSRYMMDVNTLKEADFCNSRSIRERVY 810

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           + TVH AKGLE   V + D     + + + K                             
Sbjct: 811 VTTVHKAKGLEFDNVIIYDAADGRYPNVYNKT---------------------------- 842

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                  +   EE  R  YV M+RA  +L I      ++ 
Sbjct: 843 -------RQQDEEDARKFYVAMSRAKRRLYIAYAMQMTDR 875


>gi|116049351|ref|YP_791846.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584572|gb|ABJ10587.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 530

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 108/349 (30%), Gaps = 35/349 (10%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                +        +       A ++   ++  ++ F+         L +R     +   
Sbjct: 206 DRGKLECGLREKIFVEAMALFWARFQALLREEGLMTFD----AAFQQLGERMAGGALAET 261

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 H+LIDE QD S      +++L            +  +L A+GD+ QSIY + G+
Sbjct: 262 ALAPFTHLLIDEFQDVSPQIVLWLQALHRRLAT----QGTAPSLMAIGDDWQSIYGWRGS 317

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P+  +   R    R    G+K +++ L  ++RS   I+   +KV +     Q  +    
Sbjct: 318 SPELFIDFDRHFPSR--GRGRKSALLVLETNYRSVEPIIRDGEKVLAGVRFKQDKT---- 371

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                R+ R  Q G   +         +Q         +  +      S+   A  +   
Sbjct: 372 ----CRAFRPIQPGDHGVKLVQRFDLRAQLPKLLAEIRAQCEHAAARESSERTAVLLLSR 427

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
            +  +       +   R +  K + +               R      ++++V +D    
Sbjct: 428 RNEPLQAIQAELD---RALPVKGMTIH--------------RAKGLQAEVAIVVDDCLPG 470

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             H     L A   F  +  D       L+      +      +   R 
Sbjct: 471 EKHPLRNALYAASGFFRNSYDQAMEDESLRLAYVAITRGVSRVLWYTRK 519


>gi|238894018|ref|YP_002918752.1| DNA helicase IV [Klebsiella pneumoniae NTUH-K2044]
 gi|238546334|dbj|BAH62685.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 684

 Score = 98.1 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 86/282 (30%), Gaps = 39/282 (13%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
           P      SD     +L +++      +K    +        E  + L    F        
Sbjct: 291 PTISKLESDTAARHALLLKSWQKQCQEKKAQAKGWRLWLEEEMGWQLPEGDF-------- 342

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL----TLAKYLNAHY 137
                +++ ++     ++                     ++          L   L   +
Sbjct: 343 --WQDKKVQRRMASRLDRWVSLM-RMHGGSQAEMIAGAPEAVRDLFSKRVKLMSPLMKDW 399

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           + A K    +DF  LI    ++L K         +      HIL+DE QD S  +  ++ 
Sbjct: 400 KAALKAENAVDFSGLIHQAVNILDK--------GRFVSPWKHILVDEFQDISPQRASLLA 451

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
           +L           +S  TLFAVGD+ Q+IY F GA+                    +   
Sbjct: 452 ALRR--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFNHYF--------GEGDC 495

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             L  ++R    I  + +       +      +S T    ++
Sbjct: 496 CALDTTYRFNGRIGEIANGFIQQNPHQLSKPLNSLTAGDKKA 537



 Score = 39.1 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 22/91 (24%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MT+H +KG ++  V ++       +     +  IM                        
Sbjct: 591 FMTIHASKGQQADFVIVLGLQDGEDAFPAPARESIME----------------------Q 628

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            L+   +     E  RLLYV +TRA  ++ +
Sbjct: 629 ALLPQPEDFPDAEERRLLYVALTRARHRVWL 659


>gi|328480151|gb|EGF49105.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus MTCC
           5462]
          Length = 300

 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 71/231 (30%), Gaps = 6/231 (2%)

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-----PPTIKRAHSANHNEVRIMT 576
           G++    L   ++     E   +  L   I  +                  +++ V++MT
Sbjct: 7   GSQRQANLLALVDRARTYESGGFKGLFAFIHFITLMQKQDQDLATPAQVDPDNDAVKLMT 66

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +H +KGLE PVVF++ T    F+ +      I+              + +          
Sbjct: 67  IHKSKGLEFPVVFVLQTNKH-FNRRDQSGPAILTKNGIGIKWLDPQTRVEYELPQYQAAK 125

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +  T  E  R     +TRA  +L +   + +  +  S  +T       +      + 
Sbjct: 126 AARQNQTLAEEMRFCIEALTRAQQRLYVVGATMSGQQLTSADKTVAKWAKAAEGEQLTLA 185

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                 + N  +WI      H       E       + D  +    + +  
Sbjct: 186 PQIRGAATNYLDWIGPALIRHPQVKGLTETTVKPALIADPTEFSIAIETHP 236


>gi|238792356|ref|ZP_04635990.1| Helicase IV (75 kDa helicase) [Yersinia intermedia ATCC 29909]
 gi|238728282|gb|EEQ19802.1| Helicase IV (75 kDa helicase) [Yersinia intermedia ATCC 29909]
          Length = 684

 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 94/303 (31%), Gaps = 30/303 (9%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           +K R  +  +   +  +     +             L  ++     L      QQ S+ +
Sbjct: 261 IKQRLAVD-DIQAKTFHALALQIIQQGSRKTPIISKLESDSQARRSLLIKNWQQQCSEKK 319

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
              + +    +  L       +    + +  +     E+                  +  
Sbjct: 320 AQAKGWREWLTDELEWAVDEGEFWQDKRLAARLAGRLERWLGLM-RMHGGSQAEMIEQAD 378

Query: 121 KSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
           +           L   L   ++ A K+   +DF  LI    +LL K         +    
Sbjct: 379 EEVRDLFQKRIRLMAPLLKVWKTALKEEGAVDFSGLIHQAVNLLDK--------GRFVSP 430

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             HIL+DE QD S  +  ++ +L +         +    LFAVGD+ Q+IY F GA+   
Sbjct: 431 WKHILVDEFQDISPQRAMLLAALRK--------QNKQTCLFAVGDDWQAIYRFSGAQLSL 482

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                +   + A           L  ++R    I  + ++      +      +S +   
Sbjct: 483 TTAFSQHFGEGAE--------CALDTTYRFNDRIGEIANRFIQQNPHQLKKPLNSLSKGN 534

Query: 297 HRS 299
            +S
Sbjct: 535 KKS 537



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 115/374 (30%), Gaps = 45/374 (12%)

Query: 311 WEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           W+Q  S+  +Q    +E  T   +      +      LA R+A  +   +G   +    +
Sbjct: 311 WQQQCSEKKAQAKGWREWLTDELEWAVDEGEFWQDKRLAARLAGRLERWLGLMRMHGGSQ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTR----FLKNDYKISVVGNDRFILTDHLAIKDLMA 423
             +I+  D  V    +K   L+  L +     LK +  +   G     +      + +  
Sbjct: 371 AEMIEQADEEVRDLFQKRIRLMAPLLKVWKTALKEEGAVDFSGLIHQAVNLLDKGRFVSP 430

Query: 424 LGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
               ++ +  D+S    +          ++ LF   +D          +      + Q F
Sbjct: 431 WKHILVDEFQDISPQRAMLLAALRKQNKQTCLFAVGDDWQAIYRFSGAQLSLTTAFSQHF 490

Query: 474 ANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                            I E+ +     +PH     +    KG ++ +    ++    L+
Sbjct: 491 GEGAECALDTTYRFNDRIGEIANRFIQQNPHQLKKPLNSLSKGNKKSVIILPDQQ---LE 547

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
             L+      ++    L        +     K A       +  MT+H +KG ++  V +
Sbjct: 548 TLLDKLSGFVKDDERILILARYHHLRPEILQKAATRWPKLTIDFMTIHASKGQQADYVIV 607

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                                     G P    +S   + ++             E  RL
Sbjct: 608 AGLHEGN------------------DGFPAVARESILEDVLLPAPEDFPDA----EERRL 645

Query: 651 LYVGMTRASDQLII 664
           LYV +TRA  Q+ +
Sbjct: 646 LYVAITRAKHQVWL 659


>gi|304397117|ref|ZP_07378996.1| UvrD/REP helicase [Pantoea sp. aB]
 gi|304355266|gb|EFM19634.1| UvrD/REP helicase [Pantoea sp. aB]
          Length = 677

 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 81/284 (28%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        + +  +         N         LQ                   L 
Sbjct: 289 LESDADARRALLIREWQQQCHEKKAMANGWRQWLRDELQWELPEGPF------WEDDRLA 342

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   +       +          +    +E   +  +             + L   L  
Sbjct: 343 KRLASRLERWLGLMRMHGGAQAAMIADVPEEVRDLFSKR------------IKLMAPLLK 390

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K+   +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 391 AWKSALKEEGAVDFSGLIHQAIAVLEK--------GRFISPWKHILVDEFQDISPQRAAL 442

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +    LFAVGD+ Q+IY F GAE                    + 
Sbjct: 443 LSALRQ--------QNKRTALFAVGDDWQAIYRFSGAEMTLTTAFHHYF--------GEG 486

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R    I  + ++             +S T    +S
Sbjct: 487 DRCVLDTTYRFNDRIGDIANRFIQQNPQQLAKPLNSVTKGNKKS 530



 Score = 53.0 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 96/343 (27%), Gaps = 46/343 (13%)

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD------TPLITFLTR 394
               LA+R+A  +   +    +  +G  +     D+   VR           PL+     
Sbjct: 337 EDDRLAKRLASRLERWL--GLMRMHGGAQAAMIADVPEEVRDLFSKRIKLMAPLLKAWKS 394

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM-LKSPLF------- 446
            LK +  +   G     +      + +      ++ +  D+S     L S L        
Sbjct: 395 ALKEEGAVDFSGLIHQAIAVLEKGRFISPWKHILVDEFQDISPQRAALLSALRQQNKRTA 454

Query: 447 ----NFSEDDIFKICTQRHETETVYEYIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPH 501
                     I++         T + +   +   C +         I ++ +     +P 
Sbjct: 455 LFAVGDDWQAIYRFSGAEMTLTTAFHHYFGEGDRCVLDTTYRFNDRIGDIANRFIQQNPQ 514

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
                +    KG ++ I+       D LD  LN      Q     L        +     
Sbjct: 515 QLAKPLNSVTKGNKKSIALL---AEDQLDALLNKLSGYAQPDERILLLARYHYLRPDILD 571

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           K         +  MT+H +KG ++  V L+             +  ++         P  
Sbjct: 572 KARTRWPKLNLDFMTIHASKGQQADYVILLGLQQGKEGFPAEVRESVIEQGLLPQPEPFP 631

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                   E  RL YV +TRA  Q+ +
Sbjct: 632 H----------------------AEERRLAYVALTRARQQVFL 652


>gi|294011635|ref|YP_003545095.1| putative helicase [Sphingobium japonicum UT26S]
 gi|292674965|dbj|BAI96483.1| putative helicase [Sphingobium japonicum UT26S]
          Length = 992

 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 90/922 (9%), Positives = 227/922 (24%), Gaps = 104/922 (11%)

Query: 9   LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE----E 64
            N        D +         + + V+L        +      L +             
Sbjct: 45  PNNRAIRSVSDAFVRKSGGGLLLPRLVALGDPDLGEQVGGALDPLGEDDDPIPPAIAPMR 104

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
           R  +L+         P       ++ +    + ++++  +     + D   + ++ +   
Sbjct: 105 RQMILARMVQQASAHPVDAGQALKLAQALGAVLDQIQVERLSVAALADLTLSDELSRHWQ 164

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFED-----LIINTNDLLKKRDVSAWIRYKIDQEINH 179
            SL L   L A + +   +   +D  D     L        K       I   +      
Sbjct: 165 TSLKLFGILLAQWPQELSRLGCIDLADRRNRLLERVAARWAKAPPEGFVIVAGMST---- 220

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
                   T+     ++R +                +FA  D++    ++    P     
Sbjct: 221 --------TAPAIAGLLRRIALM--------PKGAVVFAGLDQEMDRDAWDAIGPFDADP 264

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                        Q      L    R +A    V    +    +A+ +   + +      
Sbjct: 265 LTGRAPAGHETHPQYALKRLLD---RMSATRDDVALWRWGSEHDARAVRGRNISNAMLPP 321

Query: 300 S--------RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                    +        +    V+    +      +     ++  + ++     R++A 
Sbjct: 322 RLTSRWRDLKTADRSLAGVEALEVATPGEEAQAIAIALREAVETPGRTAALVTPDRQLAT 381

Query: 352 TI-SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            + +++        +     +       L+    +     F    L    K  +V     
Sbjct: 382 RVSAHLRRWGIEADDSAGLPLSRLPPGTLLIAMAEALAERFAPVALLTLLKHPLVMRGEE 441

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
            L     ++ L  L R                 P       D+        + + V    
Sbjct: 442 RLGWLEGVRGLDLLLRG--------------PRPQAGIVGLDLLLAERDGEDRQCVLRGR 487

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
            +            ++     +      +         G       +    G+   D+  
Sbjct: 488 TRLWWAEARALLEPLE--QAFLAAPDLAAQLAAIREHAGRLSHDAVWAGHQGHAAADLFA 545

Query: 531 EFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           E          Q    +L  L   L        R     H  + I+ +  A+ +++ ++ 
Sbjct: 546 EMEEAASEGPRQADIRALPALFDHL--LGGVSVRPPQGGHPRIAILGLIEARLVQTDLII 603

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L       +         + P +  + G+P    +     +  +  +   +         
Sbjct: 604 LGGLNEGTWPGLPAPDPWLAPRIRREIGLPGLESRIGLAAHDFASALGAPQ--------- 654

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
              + +TRA                     + + +   +    +     +        + 
Sbjct: 655 ---ILITRARR-----------GSGGPAVASRFWLRLKAMAGPQWKSAGRYAALAQAIDH 700

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
            A       P   P+       +++    + +    P          L            
Sbjct: 701 AAEHRPAGRP--APVPPLSVRPKVIPVTDVDRLKADPYAFYARRILRLA----------R 748

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--- 826
           L+ + +D     RG  +H++LQ           +          +       K L     
Sbjct: 749 LDPVDADAGPAWRGTAVHEILQQWAEAGSGDLADLEARARAMFDRPDVHPLLKALWQPRL 808

Query: 827 -SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYK 884
               R +   + +          ++V  +       + ++G+ D+I +     + I +YK
Sbjct: 809 IEAIRWIAAEVASDL--AAGRKILAVEIEGRAEIAGVTLTGKADRIDLLPDGKLGIVDYK 866

Query: 885 THHHVPQEIEHIPYTHIAQLSI 906
           T          +   +  QL +
Sbjct: 867 TGKPPSAR--QVKAGYALQLGL 886


>gi|330010295|ref|ZP_08306722.1| helicase IV [Klebsiella sp. MS 92-3]
 gi|328534585|gb|EGF61165.1| helicase IV [Klebsiella sp. MS 92-3]
          Length = 684

 Score = 97.7 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 85/282 (30%), Gaps = 39/282 (13%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
           P      SD     +L +++      +K    +        E  + L    F        
Sbjct: 291 PTISKLESDTAARHALLLKSWQKQCQEKKAQAKGWRLWLEEEMGWQLPEGDF-------- 342

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL----TLAKYLNAHY 137
                +++ ++     ++                     ++          L   L   +
Sbjct: 343 --WQDKKVQRRMASRLDRWVSLM-RMHGGSQAEMIAGAPEAVRDLFSKRVKLMSPLMKDW 399

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           + A K    +DF  LI    ++L K         +      HIL+DE QD S  +  ++ 
Sbjct: 400 KAALKAENAVDFSGLIHQAVNILDK--------GRFVSPWKHILVDEFQDISPQRASLLA 451

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
           +L           +S  TLFAVGD+ Q+IY F GA+                    +   
Sbjct: 452 ALRR--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFNHYF--------GEGDC 495

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             L  ++R    I  + +       +      +S      ++
Sbjct: 496 CALDTTYRFNGRIGEIANGFIQQNPHQLSKPLNSLMAGDKKA 537



 Score = 39.1 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 22/91 (24%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MT+H +KG ++  V ++       +     +  IM                        
Sbjct: 591 FMTIHASKGQQADFVIVLGLQEGEDAFPAPARESIME----------------------Q 628

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            L+   +     E  RLLYV +TRA  ++ +
Sbjct: 629 ALLPQPEDFPDAEERRLLYVALTRARHRVWL 659


>gi|331672492|ref|ZP_08373282.1| helicase IV (75 kDa helicase) [Escherichia coli TA280]
 gi|331070398|gb|EGI41763.1| helicase IV (75 kDa helicase) [Escherichia coli TA280]
          Length = 715

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 112/353 (31%), Gaps = 37/353 (10%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           ++ R     + +    +     +       +     L  +T     L  A+  +Q S+ +
Sbjct: 292 IRERLHTE-DITARTFHALALHIIQQGSKKVPIVSKLENDTAARHELFIAEWCKQCSEKK 350

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKS-PDLKEKLKKSQD--EFIKIRDRFNTY 117
              + +       LT++            ++K    L  +L +                 
Sbjct: 351 AQAKGWRQW----LTEEMQWSVPEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIA 406

Query: 118 KMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
            + +           L   L   ++ A K    +DF  LI     +L+K         + 
Sbjct: 407 SVPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQAIVILEK--------GRF 458

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
                HIL+DE QD S  +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+
Sbjct: 459 ISPWKHILVDEFQDISPQRAALLAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQ 510

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                               +    +L  ++R  + I  V ++             +S T
Sbjct: 511 MSLTTAFHENF--------GEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLT 562

Query: 294 TIRHRSSRIGQVGTVQ-LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
               ++  +     +  L +++      +      +   +      E +A+  
Sbjct: 563 NGDKKAVTLLDESQLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWCKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASVPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|281600327|gb|ADA73311.1| DNA helicase IV [Shigella flexneri 2002017]
          Length = 707

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 319 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 372

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 373 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 420

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 421 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 472

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 473 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 516

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +     +  L +++
Sbjct: 517 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKL 576

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 577 SGYAKPEERILILARYHHMRPASLEKAATRW 607



 Score = 47.2 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 322 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 381

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 382 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 441

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 442 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 501

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 502 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 561

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 562 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 618

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 619 ASKGQQADYVIIVGLQEGSGGFPAAARESIMEEALLPPVEDFPD---------------- 662

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 663 ------AEERRLMYVALTRARHRVW 681


>gi|110641152|ref|YP_668882.1| DNA helicase IV [Escherichia coli 536]
 gi|300982944|ref|ZP_07176378.1| UvrD/REP helicase [Escherichia coli MS 200-1]
 gi|110342744|gb|ABG68981.1| helicase IV [Escherichia coli 536]
 gi|300307033|gb|EFJ61553.1| UvrD/REP helicase [Escherichia coli MS 200-1]
 gi|324012915|gb|EGB82134.1| UvrD/REP helicase [Escherichia coli MS 60-1]
          Length = 715

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 92/278 (33%), Gaps = 31/278 (11%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
           P+     +D      L +        +K    +   Q    E ++S+    F   +   +
Sbjct: 322 PIVSKLENDTAARHELFIAEWCKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQR 381

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           +         +   L      +Q E I            K     + L   L   ++ A 
Sbjct: 382 R---LASRLDRWVSLMRMHGGAQAEMIASAPEVIRDLFSKR----IKLMAPLLKAWKGAL 434

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    +DF  LI     +L+K         +      HIL+DE QD S  +  ++ +L +
Sbjct: 435 KAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAALLAALRK 486

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +S  TLFAVGD+ Q+IY F GA+                    +    +L 
Sbjct: 487 --------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEGDRCDLD 530

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            ++R  + I  V ++             +S T    ++
Sbjct: 531 TTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 568



 Score = 48.8 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWCKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFI 411
            +    +    +  +I +   ++     K   L+  L +     LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEVIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|30248124|ref|NP_840194.1| recQ; ATP-dependent DNA helicase [Nitrosomonas europaea ATCC 19718]
 gi|30180009|emb|CAD84004.1| recQ; ATP-dependent DNA helicase [Nitrosomonas europaea ATCC 19718]
          Length = 1457

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 75/258 (29%), Gaps = 41/258 (15%)

Query: 153  IINTNDLL---KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            + +  +LL   +  +    +R ++ +   +IL+DE QD   +Q+ ++ +L          
Sbjct: 956  LSDAVELLEGKRNVEGEDNLREQLLRGYRYILVDEYQDIDDLQYRLVSALAGR----HAE 1011

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  + AVGD+ Q+IY++     + + R +   +   +          L  ++RS+  
Sbjct: 1012 EDGRLCIMAVGDDDQNIYAWRDTNNRYIERFREDYEASIS---------FLVDNYRSSLR 1062

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            I+   +++                 IR   +R        LWE    Q   +        
Sbjct: 1063 IIEAANQLIGQNSAR----LKEANPIRIDRARQELP-AGGLWE---EQDKQRKGRVLRLL 1114

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                D       A                   +               VL R  +     
Sbjct: 1115 IDPSDRERGNLQAQA-------------AMLELERLLVLEQGSWNGCAVLARTHRYLWP- 1160

Query: 390  TFLTRFLKNDYKISVVGN 407
                +     + I     
Sbjct: 1161 ---IQAWCEQHDIPYFLA 1175


>gi|170020637|ref|YP_001725591.1| DNA helicase IV [Escherichia coli ATCC 8739]
 gi|169755565|gb|ACA78264.1| UvrD/REP helicase [Escherichia coli ATCC 8739]
          Length = 684

 Score = 97.7 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAQNAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 45.7 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 104/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK    +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAQNAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|261880650|ref|ZP_06007077.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332603|gb|EFA43389.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 907

 Score = 97.7 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 112/314 (35%), Gaps = 65/314 (20%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                YE  K +N +LDFEDL+  T   L++            +    I +DEVQD +++
Sbjct: 229 RYAHAYEAYKLQNNLLDFEDLLQKTYIALREDASY--------KRYPWIQVDEVQDLNMM 280

Query: 192 QWEVIRSLTEDFFV--GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           Q  +I +L+   F   G N  ++   +  +GDE Q+I+SF GA+ + +   K        
Sbjct: 281 QLAIIDALSTFKFDDRGGNAAANKGAVMYLGDEMQAIFSFMGAKLQILELLKHR------ 334

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               K S+  L ++ RS   ++ +++         + L  D                  +
Sbjct: 335 ---CKGSLHHLGINHRSPKYLVDLLNT-----YAVRELHFDP-----------------E 369

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L  +    + +  N  +   +                      I          ++G   
Sbjct: 370 LLPEAKKDNTAVGNELRIVASDN--------------------IEAEFDDVVRMASGFFD 409

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +   V+V    D  +I+      +      V G D   L     +K +MA    + 
Sbjct: 410 NYPNETTAVIVNANNDADMISKKL-AERAQTHFKVSGTD---LFATPEVKLIMAHLSVLA 465

Query: 430 SQEDDLSFVCMLKS 443
           ++ + L++  +LK 
Sbjct: 466 NEHNFLAWSRLLKG 479



 Score = 43.4 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 45/368 (12%), Positives = 92/368 (25%), Gaps = 78/368 (21%)

Query: 363 FSNGKKRVIQAKDIL---VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
              G++      DI    +  R+ +         +   +     V+          +   
Sbjct: 565 IETGREIPKMLGDIPNPIIGEREHQTIRPHEEGLQMFLDFVGSDVLIGHNAEYDYRIMDY 624

Query: 420 DLMALGRFILSQE------DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE----Y 469
           +L      +  Q+      D L  + +L+  L  F    + +          + +     
Sbjct: 625 NLRRYLPHVDWQKEHPVCLDSLKIIRLLRPELKAFKLKLLLQELHLEGTNSHLADDDVNA 684

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK--GRQQFISRFGNEVI- 526
                    ++ Q ++    E +                      GR++  SR  N    
Sbjct: 685 TVSLLRYCNTRAQELLNSQKEFLGRKTTRERIRLLRQNYHELYATGRERLYSREQNTEEP 744

Query: 527 -------------------------DVLDEFLNFTLRNEQNSY---SSLQELISELEQYP 558
                                    + +  FL   + +E+        L   I E+  + 
Sbjct: 745 AVVTEAKRFYAQMRSNGWMREIPKIEYIFRFLTDDVIDERRDPSLKEQLNRHIMEINTFK 804

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                  S   + + + T+H AKGLE   V + D       +                  
Sbjct: 805 EADLCGSSTIDDRIFVTTIHKAKGLEFDNVIVFDVVDGRIPN------------------ 846

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                                      E  R LYV M+RA  +L+I    +    + +  
Sbjct: 847 ----------------YYNENNPKGLAEDARKLYVAMSRAKKRLVITYSKSRLVGRDTKP 890

Query: 679 RTWYDMVY 686
           +     + 
Sbjct: 891 QHLSRFLS 898


>gi|218688798|ref|YP_002397010.1| DNA helicase IV [Escherichia coli ED1a]
 gi|218426362|emb|CAR07187.1| DNA helicase IV [Escherichia coli ED1a]
          Length = 684

 Score = 97.7 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 45.7 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 109/385 (28%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V                               P +   + +   L+  
Sbjct: 596 ASKGQQADYVIIVGLQEGS----------------------DGFPAAARESIMEEALLPA 633

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
           ++     E  RL+YV +TRA  ++ 
Sbjct: 634 VEDFPDAEERRLMYVALTRARHRVW 658


>gi|218892722|ref|YP_002441591.1| putative helicase [Pseudomonas aeruginosa LESB58]
 gi|218772950|emb|CAW28762.1| probable helicase [Pseudomonas aeruginosa LESB58]
          Length = 530

 Score = 97.7 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 107/340 (31%), Gaps = 35/340 (10%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                +       A ++   ++  ++ F+         L +R     +         H+L
Sbjct: 215 REKIFVEAMALFWARFQALLREEGLMTFD----AAFQQLGERMAGGALAETALAPFTHLL 270

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S      +++L            +  +L A+GD+ QSIY + G+ P+  +   
Sbjct: 271 IDEFQDVSPQIVLWLQALHRRLAT----QGTAPSLMAIGDDWQSIYGWRGSSPELFIDFD 326

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R    R    G+K +++ L  ++RS   I+   +KV +     Q  +         R+ R
Sbjct: 327 RHFPSR--GRGRKSALLVLETNYRSVEPIIRDGEKVLAGVRFKQDKT--------CRAFR 376

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             Q G   +         +Q         +  +      S+   A  +    +  +    
Sbjct: 377 PIQPGDHGVKLVQRFDLRAQLPKLLAEIRAQCEHAAARESSERTAVLLLSRRNEPLQAIQ 436

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +   R +  K + +               R      ++++V +D      H     L
Sbjct: 437 AELD---RALPVKGMTIH--------------RAKGLQAEVAIVVDDCLPGEKHPLRNAL 479

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            A   F  +  D       L+      +      +   R 
Sbjct: 480 YAASGFFRNSYDQAMEDESLRLAYVAITRGVSRVLWYTRK 519


>gi|328480155|gb|EGF49107.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus MTCC
           5462]
          Length = 168

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 52/161 (32%), Gaps = 16/161 (9%)

Query: 789 LLQVIFTLPEHKR--KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--D 844
           LLQ++             +  +      +      +  L ++ R     +     +    
Sbjct: 3   LLQLVDLTKPITLNSLEALRHHLITTGVMPAEVAKRIDLTALVRFFATDLGQLLQAKPQQ 62

Query: 845 SYSEVSVSGKINC----------PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
              EV  S  +            P +D+++ G +D        + +F+YKT H    +  
Sbjct: 63  VQREVPFSMLLPANQLFEILQNDPGEDVLVHGIMDGYVTEADGVTLFDYKTDHEP--DPA 120

Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII 935
            +   +  QL++Y + L    P       L+ +    +  +
Sbjct: 121 KLVARYRGQLNLYAQALAQLQPKPVTHRYLVLLRTGTIVDL 161


>gi|300819206|ref|ZP_07099407.1| UvrD/REP helicase [Escherichia coli MS 107-1]
 gi|300925355|ref|ZP_07141242.1| UvrD/REP helicase [Escherichia coli MS 182-1]
 gi|301327207|ref|ZP_07220469.1| UvrD/REP helicase [Escherichia coli MS 78-1]
 gi|300418522|gb|EFK01833.1| UvrD/REP helicase [Escherichia coli MS 182-1]
 gi|300528225|gb|EFK49287.1| UvrD/REP helicase [Escherichia coli MS 107-1]
 gi|300846188|gb|EFK73948.1| UvrD/REP helicase [Escherichia coli MS 78-1]
          Length = 715

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +     +  L +++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKAVTLLDESQLDALLDKL 584

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 585 SGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 47.6 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|271501509|ref|YP_003334535.1| UvrD/REP helicase [Dickeya dadantii Ech586]
 gi|270345064|gb|ACZ77829.1| UvrD/REP helicase [Dickeya dadantii Ech586]
          Length = 685

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 95/275 (34%), Gaps = 33/275 (12%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
           +S +    +   E  +    ++    ++ +Q +   +  +    + L +    Q   +  
Sbjct: 293 ISRLETDGAYRREFLSRHWQQQCD--EKKTQAKGWRQWLTEELEWTLPEGNFWQDTALAS 350

Query: 88  EINKKSPDLKEKLK---KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
            +  +       ++    +Q E + + D        +     L L   L   +++A K  
Sbjct: 351 RLAGRLERWLGLMRMQGGTQSEMLALADDETRPVFQQR----LRLMAPLLKAWKKALKDE 406

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             +DF  LI    + L K         +      HIL+DE QD S  +  ++ +L     
Sbjct: 407 GAVDFSGLIHQAVNYLDK--------GRFVSPWRHILVDEFQDISPQRARLLEALRR--- 455

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                 S   +LFAVGD+ Q+IY F GAE       +R           + +   L  ++
Sbjct: 456 -----QSPDSSLFAVGDDWQAIYRFSGAELTLTTAFERHF--------GEGAQCVLDTTY 502

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
           R    I  +  +           + +S      +S
Sbjct: 503 RFNHRIGEIASRFIQQNPAQLKKTLNSLRDGDKKS 537



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/394 (13%), Positives = 113/394 (28%), Gaps = 49/394 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +   +   Q   +   Q + W  +     + +         + LA R+A  +  
Sbjct: 299 DGAYRREFLSRHWQQQCDEKKTQAKGWRQWLTEELEWTLPEGNFWQDTALASRLAGRLER 358

Query: 356 MIGTDTIFSNGKKRVIQAKD----ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            +G   +    +  ++   D     +   R R   PL+    + LK++  +   G     
Sbjct: 359 WLGLMRMQGGTQSEMLALADDETRPVFQQRLRLMAPLLKAWKKALKDEGAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCML-------KSP-----LFNFSEDDIFKICTQ 459
           +      + +      ++ +  D+S            +SP             I++    
Sbjct: 419 VNYLDKGRFVSPWRHILVDEFQDISPQRARLLEALRRQSPDSSLFAVGDDWQAIYRFSGA 478

Query: 460 RHETETVYEYIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                T +E    + A C +         I E+       +P      +   + G ++ +
Sbjct: 479 ELTLTTAFERHFGEGAQCVLDTTYRFNHRIGEIASRFIQQNPAQLKKTLNSLRDGDKKSV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
                E    LD  L+            L        +     K      +  +  MT+H
Sbjct: 539 VLLEQEQ---LDALLDKMSGYVTPEARILILARYHHLRPDVLDKAQTRWPNLHLDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V L+             +  ++ ++      P                   
Sbjct: 596 ASKGQQADYVILLGLHEGRDGFPAPVRESVLEAVLLPHPEPFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                  E  RLLYV +TRA  Q+ +    +  +
Sbjct: 640 ------AEERRLLYVALTRAKHQVWLLYSRDEPS 667


>gi|322832278|ref|YP_004212305.1| UvrD/REP helicase [Rahnella sp. Y9602]
 gi|321167479|gb|ADW73178.1| UvrD/REP helicase [Rahnella sp. Y9602]
          Length = 684

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 65/172 (37%), Gaps = 24/172 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K+   +DF  LI    ++L+K         +      HIL+DE Q
Sbjct: 389 IRLMAPLMKAWKTALKEEGAVDFSGLIHQAVNILEK--------GRFVSPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +   +LFAVGD+ Q+IY F GAE             
Sbjct: 441 DISPQRALLLSALRKL--------NKHTSLFAVGDDWQAIYRFSGAELSLTTAFADNF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                  + +   L  ++R    I  + +K             +S T    +
Sbjct: 491 ------GEGAQCALDTTYRFNDRIGEIANKFVQQNPYQLKKPLNSLTKGNKK 536



 Score = 46.1 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 100/337 (29%), Gaps = 42/337 (12%)

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLV--RKRKDTPLITFLTRFLKNDY 400
           LA R+   +   +    +    +  +I+   +D+  L   R R   PL+      LK + 
Sbjct: 348 LAERLGSRLERWLSLMRMHGGSQAEMIESAPEDVKDLFTKRIRLMAPLMKAWKTALKEEG 407

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPLFNFSE 450
            +   G     +      + +      ++ +  D+S    L           + LF   +
Sbjct: 408 AVDFSGLIHQAVNILEKGRFVSPWKHILVDEFQDISPQRALLLSALRKLNKHTSLFAVGD 467

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLI 507
           D          E      +   F                 I E+ +     +P+     +
Sbjct: 468 DWQAIYRFSGAELSLTTAFADNFGEGAQCALDTTYRFNDRIGEIANKFVQQNPYQLKKPL 527

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
               KG ++ +        D +++ L+            L        +     K A   
Sbjct: 528 NSLTKGNKKNVVILP---EDQMEKLLDKLSGYVTVDEHILVLARYHHLRPQILEKAATRW 584

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               +  MT+H +KG ++  V +V             +  ++        + +  P++  
Sbjct: 585 PKLNLDFMTIHASKGQQAEYVIIVGLHDGNDGFPAPARESLL------EEVLLPEPENFL 638

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                             E  RLLYV MTRA  Q+ +
Sbjct: 639 D----------------AEERRLLYVAMTRAKHQVWL 659


>gi|331676752|ref|ZP_08377448.1| helicase IV (75 kDa helicase) [Escherichia coli H591]
 gi|331075441|gb|EGI46739.1| helicase IV (75 kDa helicase) [Escherichia coli H591]
 gi|332102207|gb|EGJ05553.1| DNA helicase IV [Shigella sp. D9]
          Length = 715

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +     +  L +++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKAVTLLDESQLDALLDKL 584

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 585 SGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|325496892|gb|EGC94751.1| DNA helicase IV [Escherichia fergusonii ECD227]
          Length = 684

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 26/230 (11%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 389 IKLLAPLLKAWKSALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +S  +LFAVGD+ Q+IY F GA+        +    
Sbjct: 441 DISPQRAALLAALRK--------QNSQTSLFAVGDDWQAIYRFSGAQLSLTTAFHQTF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                  +    +L  ++R  + I  V ++      +      +S  +   +S  + + G
Sbjct: 491 ------GEGDRCDLDTTYRFNSRIGEVANRFIQQNPHQLKKPLNSLMSGDKKSVTLLEEG 544

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             QL   +          ++    + +  L   S      R     I  M
Sbjct: 545 --QLDALLDKLSGYAKPEERILVLARYHHLKPASLEKAQTRWPKLQIDFM 592



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 98/334 (29%), Gaps = 42/334 (12%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLVRKRKD--TPLITFLTRFLKNDYKI 402
           RR+A  +   +G   +    +  +I    +DI  L  KR     PL+      LK +  +
Sbjct: 350 RRLASRLDRWVGLMRMHGGAQAEMIAGAPEDIRDLFSKRIKLLAPLLKAWKSALKAENAV 409

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPLFNFSEDD 452
              G     +      + +      ++ +  D+S               ++ LF   +D 
Sbjct: 410 DFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTSLFAVGDDW 469

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILG 509
                    +      + Q F                 I E+ +     +PH     +  
Sbjct: 470 QAIYRFSGAQLSLTTAFHQTFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPHQLKKPLNS 529

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
              G ++ ++         LD  L+      +     L        +     K       
Sbjct: 530 LMSGDKKSVTLLEEGQ---LDALLDKLSGYAKPEERILVLARYHHLKPASLEKAQTRWPK 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++  MT+H +KG ++  V +V                         G P    +S    
Sbjct: 587 LQIDFMTIHASKGQQADYVIIVGLHEGN------------------DGFPAPARESIIEE 628

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            ++  +          E  RLLYV +TRA  ++ 
Sbjct: 629 ALLPPVEDFADA----EERRLLYVALTRARQRVW 658


>gi|323190776|gb|EFZ76045.1| helicase IV [Escherichia coli RN587/1]
          Length = 684

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 106/325 (32%), Gaps = 32/325 (9%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
           P+     +D      L +        +K    +   Q    E ++S+    F   +   +
Sbjct: 291 PIVSKLENDTAARHELFIAEWCKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQR 350

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           +         +   L      +Q E I            K     + L   L   ++ A 
Sbjct: 351 R---LASRLDRWVSLMRMHGGAQAEMIASAPEVIRDLFSKR----IKLMAPLLKAWKGAL 403

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    +DF  LI     +L+K         +      HIL+DE QD S  +  ++ +L +
Sbjct: 404 KAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAALLAALRK 455

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +S  TLFAVGD+ Q+IY F GA+                    +    +L 
Sbjct: 456 --------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEGDRCDLD 499

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQVVSQHDS 320
            ++R  + I  V ++             +S T    ++  +   G +  L +++      
Sbjct: 500 TTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKLSGYAKP 559

Query: 321 QCNPQQESWTSYFDSLPQESSASIL 345
           +      +   +      E +A+  
Sbjct: 560 EERILILARYHHMRPASLEKAATRW 584



 Score = 45.3 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWCKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFI 411
            +    +    +  +I +   ++     K   L+  L +     LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEVIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|324113714|gb|EGC07689.1| UvrD/REP helicase [Escherichia fergusonii B253]
          Length = 684

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 26/230 (11%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 389 IKLLAPLLKAWKSALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +S  +LFAVGD+ Q+IY F GA+        +    
Sbjct: 441 DISPQRAALLAALRK--------QNSQTSLFAVGDDWQAIYRFSGAQLSLTTAFHQTF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                  +    +L  ++R  + I  V ++      +      +S  +   +S  + + G
Sbjct: 491 ------GEGDRCDLDTTYRFNSRIGEVANRFIQQNPHQLKKPLNSLMSGDKKSVTLLEEG 544

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             QL   +          ++    + +  L   S      R     I  M
Sbjct: 545 --QLDALLDKLSGYAKPEERILVLARYHHLKPASLEKAQTRWPKLQIDFM 592



 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 42/334 (12%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLVRKRKD--TPLITFLTRFLKNDYKI 402
           RR+A  +   +    +    +  +I    +DI  L  KR     PL+      LK +  +
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIAGAPEDIRDLFSKRIKLLAPLLKAWKSALKAENAV 409

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPLFNFSEDD 452
              G     +      + +      ++ +  D+S               ++ LF   +D 
Sbjct: 410 DFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTSLFAVGDDW 469

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILG 509
                    +      + Q F                 I E+ +     +PH     +  
Sbjct: 470 QAIYRFSGAQLSLTTAFHQTFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPHQLKKPLNS 529

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
              G ++ ++         LD  L+      +     L        +     K       
Sbjct: 530 LMSGDKKSVTLLEEGQ---LDALLDKLSGYAKPEERILVLARYHHLKPASLEKAQTRWPK 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++  MT+H +KG ++  V +V                         G P    +S    
Sbjct: 587 LQIDFMTIHASKGQQADYVIIVGLHEGN------------------DGFPAPARESIIEE 628

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            ++  +          E  RLLYV +TRA  ++ 
Sbjct: 629 ALLPPVEDFADA----EERRLLYVALTRARQRVW 658


>gi|309795048|ref|ZP_07689468.1| UvrD/REP helicase [Escherichia coli MS 145-7]
 gi|308121352|gb|EFO58614.1| UvrD/REP helicase [Escherichia coli MS 145-7]
          Length = 715

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 327 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 380

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 381 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 428

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 429 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 480

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 481 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 524

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +     +  L +++
Sbjct: 525 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKAVTLLDESQLDALLDKL 584

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 585 SGYAKPEERILILARYHHMRPASLEKAATRW 615



 Score = 47.6 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 330 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 389

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 390 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 449

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 450 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 509

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 510 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKAV 569

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 570 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 626

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 627 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 670

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 671 ------AEERRLMYVALTRARHRVW 689


>gi|296390230|ref|ZP_06879705.1| putative helicase [Pseudomonas aeruginosa PAb1]
          Length = 651

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 107/340 (31%), Gaps = 35/340 (10%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                +       A ++   ++  ++ F+         L +R     +         H+L
Sbjct: 336 REKIFVEAMALFWARFQALLREEGLMTFD----AAFQQLGERMAGGALAETALAPFTHLL 391

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S      +++L            +  +L A+GD+ QSIY + G+ P+  +   
Sbjct: 392 IDEFQDVSPQIVLWLQALHRRLAT----QGTAPSLMAIGDDWQSIYGWRGSSPELFIDFD 447

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R    R    G+K +++ L  ++RS   I+   +KV +     Q  +         R+ R
Sbjct: 448 RHFPSR--GRGRKSALLVLETNYRSVEPIIRDGEKVLAGVRFKQDKT--------CRAFR 497

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             Q G   +         +Q         +  +      S+   A  +    +  +    
Sbjct: 498 PIQPGDHGVKLVQRFDLRAQLPKLLAEIRAQCEHAAARESSERTAVLLLSRRNEPLQAIQ 557

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +   R +  K + +               R      ++++V +D      H     L
Sbjct: 558 AELD---RALPVKGMTIH--------------RAKGLQAEVAIVVDDCLPGEKHPLRNAL 600

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            A   F  +  D       L+      +      +   R 
Sbjct: 601 YAASGFFRNSYDQAMEDESLRLAYVAITRGVSRVLWYTRK 640


>gi|218557861|ref|YP_002390774.1| DNA helicase IV [Escherichia coli S88]
 gi|218364630|emb|CAR02316.1| DNA helicase IV [Escherichia coli S88]
          Length = 684

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 104/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENTVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +   G +  L +++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDEGQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 44.9 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENTVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDEGQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|218548471|ref|YP_002382262.1| DNA helicase IV [Escherichia fergusonii ATCC 35469]
 gi|218356012|emb|CAQ88628.1| DNA helicase IV [Escherichia fergusonii ATCC 35469]
          Length = 684

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 26/230 (11%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 389 IKLLAPLLKAWKSALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +S  +LFAVGD+ Q+IY F GA+        +    
Sbjct: 441 DISPQRAALLAALRK--------QNSQTSLFAVGDDWQAIYRFSGAQLSLTTAFHQTF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                  +    +L  ++R  + I  V ++      +      +S  +   +S  + + G
Sbjct: 491 ------GEGDRCDLDTTYRFNSRIGEVANRFIQQNPHQLKKPLNSLMSGDKKSVTLLEEG 544

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             QL   +          ++    + +  L   S      R     I  M
Sbjct: 545 --QLDALLDKLSGYAKPEERILVLARYHHLKPASLEKAQTRWPKLQIDFM 592



 Score = 46.8 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 42/334 (12%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLVRKRKD--TPLITFLTRFLKNDYKI 402
           RR+A  +   +    +    +  +I    +DI  L  KR     PL+      LK +  +
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIAGAPEDIRDLFSKRIKLLAPLLKAWKSALKAENAV 409

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPLFNFSEDD 452
              G     +      + +      ++ +  D+S               ++ LF   +D 
Sbjct: 410 DFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTSLFAVGDDW 469

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILG 509
                    +      + Q F                 I E+ +     +PH     +  
Sbjct: 470 QAIYRFSGAQLSLTTAFHQTFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPHQLKKPLNS 529

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
              G ++ ++         LD  L+      +     L        +     K       
Sbjct: 530 LMSGDKKSVTLLEEGQ---LDALLDKLSGYAKPEERILVLARYHHLKPASLEKAQTRWPK 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++  MT+H +KG ++  V +V                               P     +
Sbjct: 587 LQIDFMTIHASKGQQADYVIIVGLHEGN----------------------DGFPAPARES 624

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            I   L+  ++     E  RLLYV +TRA  ++ 
Sbjct: 625 IIEEALLPPVEDFADAEERRLLYVALTRARQRVW 658


>gi|317505660|ref|ZP_07963563.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606]
 gi|315663245|gb|EFV03009.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606]
          Length = 901

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/391 (14%), Positives = 121/391 (30%), Gaps = 74/391 (18%)

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
              +          RD  +     +     L   + L   YE  K  N ++DFED+++ +
Sbjct: 186 AAMMVDIYKHIDTYRDVCSGLDAQQLIYRLLRKMQ-LAHQYERYKDDNRLMDFEDILLLS 244

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +             +     + I +DEVQD + +Q  +I ++T               +
Sbjct: 245 YE-----------HREQLPRFSWIQVDEVQDLNPLQLALIDAMTAR------EEGQTPCV 287

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             +GD +QSI+SF GA+   +   +              +I  L  + RS   +L + + 
Sbjct: 288 IYLGDPQQSIFSFMGAKCSTLDFLRNR---------CAGNIHSLSKNHRSPKYLLDIFNT 338

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
                  A      S   +   S +   +G    W Q  +      +  Q++     D  
Sbjct: 339 ------YAVKQMGISPDLLPSTSFQPTTMGNELQWFQSDTIETEYLDAAQQAVRMLHDFP 392

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
              +                                     ++V   +D   ++   + L
Sbjct: 393 EDTT------------------------------------AIIVNSNRDADGVSDGLKQL 416

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
           K              L     IK L A    + +  + +++  +L+      + +   + 
Sbjct: 417 KA----PHFKVSGEDLFSSPQIKLLFAHLTIMNNPHNFIAWARILEGMQVFRTSNAARRF 472

Query: 457 CTQRHETETV-YEYIQKFANCGISKFQHVIK 486
                +   +  ++++      IS+F +  +
Sbjct: 473 VRACSDRALLPSDFLRDDGQTYISRFVNAYE 503



 Score = 41.4 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 49/427 (11%), Positives = 118/427 (27%), Gaps = 66/427 (15%)

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           ++V +I +      +  +  I   ++   + G V L   +    +S     +        
Sbjct: 504 NEVITIFDTETTGLDVFSDDILQIAAVQLKNGAVVLGSAMSIYLESDKEIPEMLGDIVNP 563

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            + +     +++R+ A      +     ++ G   +    D  + +        +     
Sbjct: 564 IIEERRHHQLISRQDA------LQRFVDYAQGTVLLGHNADFDIHILTNNLLRELPECPL 617

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
               +           +L   L    L  L   +  + ++        +     +   IF
Sbjct: 618 PENLN-NYLDSLLLIRLLRPGLRQYKLKYLLEVLHLEGENSHLADADVNATRALT---IF 673

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                R          ++ +     + Q  +  +        + +    +T         
Sbjct: 674 CYDHARE------MVAEQQSFITHKRVQERVVTLRNNYLSHFYHTADCLWTNDDNKDLLV 727

Query: 515 QQFISRFGNEVIDVLDE---FLNFTLRN------EQNSYSSLQ----ELISELEQYPPTI 561
           ++    +   V + L E    + +  R       +++   +L       I EL       
Sbjct: 728 EEMRYLYSIWVEEHLIEPLPMVEYIFRYVASDLLQRDEPPALALQIGRHILELNTLKEAD 787

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
               +   +++ + TVH AKGLE   V + D     + +                     
Sbjct: 788 LCGSATIDDKIFVTTVHKAKGLEFDNVIIFDVIEGRYPN--------------------- 826

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII---CKHSNTSNEKKSNQ 678
                               S   E  R LYV MTRA  +L++       +   +++   
Sbjct: 827 -------------YYSRENPSQVAEDARKLYVAMTRAKKRLMVMQSSSRIDYRGQRRPIA 873

Query: 679 RTWYDMV 685
            + +   
Sbjct: 874 LSRFMEC 880


>gi|307700023|ref|ZP_07637072.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614784|gb|EFN94004.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 1177

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 112/1111 (10%), Positives = 280/1111 (25%), Gaps = 250/1111 (22%)

Query: 2    KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
            +  F L L+ +     +      +   +++ +      E    +  +    +    ++  
Sbjct: 78   RRAFDLRLDNAVVGDSRSFASAVWGFFNEMRRAAD-CSEVRLLSDAEVLAWMDPWLESNV 136

Query: 62   IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                 + + +    Q       +      +K   L       +    K+R +  T +   
Sbjct: 137  PGGFAAAVGTQGFRQN--LLDGLYRVRCVEKQRTLGALHPWVRGILGKLRQQVKTSQSQG 194

Query: 122  STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                    A  L   Y +A +                             K   + + +L
Sbjct: 195  GKNPWELDAGSLYEEYLQALEA---------------------------GKHVAQPSLVL 227

Query: 182  IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
            +D+ Q+ + +  E++               +   + AVG    S   + G EP+ + +  
Sbjct: 228  LDDWQNANGLMQEIVCQWAA----------TGTQVVAVGLADLSCNEYRGGEPQALQQLA 277

Query: 242  RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            +  Q   +  G+K     L  ++                 +  +    D+  T       
Sbjct: 278  QRLQANLS--GRKVRQKMLTETY---------------ANDRLESFWRDTVNTF------ 314

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             G   T+ LW+ +   H                 L + ++ +   R I   +        
Sbjct: 315  -GVSTTLDLWKPLGEAHPVSQEKPSAEDGLSGVHLIEAANDARQYRFIGRFLQE------ 367

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK-D 420
                     +    + VLV  +     +    + L     +    ++     +       
Sbjct: 368  -VHLFSDPSVPYSQMAVLVNSKAVGHSVCQQLKSL----GVPASLSEATSQINEGRFSAW 422

Query: 421  LMALGRFILSQEDDLSFVCM---LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC- 476
            L+ L +   ++  D +   +   L+S  F +    + ++     +          F+   
Sbjct: 423  LLRLLKLACAKTWDFTDFLITDFLQSEFFGWGSARLRQLDDALKDLAYPMPRQSDFSQAA 482

Query: 477  -----------------GISKFQHVIKYIHELI-----------HIAQFCSPHDFFT--- 505
                              +   +   + +                +       + +    
Sbjct: 483  DFESAISAWEMNTNKLGILPWVKEFWEDLLASRPFHNQDLETVFALGDAKRLAELYEVLI 542

Query: 506  -----------------LILGAKKGRQQFISRFGNEVI-------------DVLDEFLNF 535
                              +L    GR + +                     D++ +    
Sbjct: 543  KVQDLWQKDSGNVQMMLWVLWDGLGRGEELRELTFTSELDSIVRDQLNLELDLVMDLFKA 602

Query: 536  TLRNEQNSYSSLQELISELEQYPPTIKRAHSANH---NEVRIMTVHTAKGLESPVVFLVD 592
                EQ        + ++          + + +H   + V I T   A      VV +  
Sbjct: 603  ADWYEQRYPGGDAAVFAKKMLDRSLPTVSVAPHHQSTDAVTITTPIGAASRHWKVVAVAG 662

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                 +  +      +  S+ D     +    + +    +  +    + S   +  R   
Sbjct: 663  LNDGAWPSRSWPGDLLGTSMFD-----LSRDDTGTDCANLEVIKAGFQWSFHADLRR-FL 716

Query: 653  VGMTRASDQLII---------------------------------------------CKH 667
              ++RA++ L++                                                
Sbjct: 717  AAISRATETLVLGTTTGDFESPSPLVLRLADNPAIVVHKDVVGFTPKPEGTENSGAGTAS 776

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI---AYEWSTHHPENTPL 724
                +   SN R     +       +   ++    S  + E     A+  +         
Sbjct: 777  FALLDNPPSNLRDMVARLRILTMLSDAQVQMLGVGSAEQSEAASLLAWLGNAPGSAARAA 836

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ------ 778
              E  +  L      P         +    + +  S +++      ++ +S         
Sbjct: 837  NPENWMGILRPTVVEPAVSAGETTVENKPVFRIRASGMESLLNNPFDTEMSRLGYEDERE 896

Query: 779  ----TFNRGLIIHKLLQVI-----------FTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                    G +IHK+ + +             + + KR+           KL      +N
Sbjct: 897  EEYNAAIIGTLIHKVAEEMGRRHWYGSSCDDKVDKLKREEICEETAGLMEKLLEGSRAEN 956

Query: 824  ------------LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
                        LL  +   L +  + +   C     +  S  +      I  + RID++
Sbjct: 957  WMFINFERRLNYLLKRMNEFLYDHQVPSLFECGYRMTIPDSNNL----GQISYTARIDRV 1012

Query: 872  SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV---------- 921
              ++  I + +YKT          +      QL +Y+K   +    + +           
Sbjct: 1013 LFTESGIVLADYKTGSLGNYTKPKVANN--LQLLLYQKAFNE---GRPIGGAPQGLVADA 1067

Query: 922  CLLIYVSEPKVFIIPQNKLNKAFAEISTKIP 952
              ++ +   K  ++ Q  L      +    P
Sbjct: 1068 AWIVGLRGDKTTVVAQGSLADELTVVKIAKP 1098


>gi|146328|gb|AAA23952.1| helicase IV [Escherichia coli]
          Length = 684

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRIDGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 45.3 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    I    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRIDGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|288921657|ref|ZP_06415926.1| UvrD/REP helicase [Frankia sp. EUN1f]
 gi|288346926|gb|EFC81234.1| UvrD/REP helicase [Frankia sp. EUN1f]
          Length = 293

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 67/229 (29%), Gaps = 40/229 (17%)

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFT 536
             +  +  + +L  +            +L       + ++    E     + L E +   
Sbjct: 4   SVRDFVALLGDLRDLLPSGPL-AVIEAVLERTGYLSELVAEDTIEAQGRVENLRELVGVV 62

Query: 537 LRN-EQNSYSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E+    SL E + ++              +   V +MT+H+AKGLE PVVFL    
Sbjct: 63  QEFTERRPDGSLAEFLEQVSLVADADQIPDDDGSDGVVTLMTLHSAKGLEFPVVFLTGLE 122

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             VF H                                            EE  RL YVG
Sbjct: 123 DGVFPHLRTLGDPT----------------------------------ELEEERRLAYVG 148

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           +TRA  +L + +    S   +         + +        +++     
Sbjct: 149 VTRARARLYLTRAQVRSAWGQPAYNPPSRFLGEVPDALVEWRRLPEPAP 197


>gi|107100841|ref|ZP_01364759.1| hypothetical protein PaerPA_01001870 [Pseudomonas aeruginosa PACS2]
          Length = 651

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 106/340 (31%), Gaps = 35/340 (10%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                +       A ++   ++  ++ F+         L +R     +         H+L
Sbjct: 336 REKIFVEAMALFWARFQALLREEGLMTFD----AAFQQLGERMAGGALAETALAPFTHLL 391

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S      +++L            +  +L A+GD+ QSIY + G+ P+  +   
Sbjct: 392 IDEFQDVSPQIVLWLQALHRRL----ANQGTAPSLMAIGDDWQSIYGWRGSSPELFIDFD 447

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R    R    G+K +++ L  ++RS   I+   +KV +     Q  +         R+ R
Sbjct: 448 RHFPSR--GRGRKSALLVLETNYRSVEPIIRDGEKVLAGVRFKQDKT--------CRAFR 497

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             Q G   +         +Q         +  +       +   A  +    +  +    
Sbjct: 498 PIQPGDHGVKLVQRFDLRAQLPKLLAEIRAQCEHAAARERSERTAVLLLSRRNEPLQAIQ 557

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +   R +  K + +               R      ++++V +D      H     L
Sbjct: 558 AELD---RALPVKGMTIH--------------RAKGLQAEVAIVVDDCLPGEKHPLRNAL 600

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            A   F  +  D       L+      +      +   R 
Sbjct: 601 YAASGFFRNSYDQAMEDESLRLAYVAITRGVSRVLWYTRK 640


>gi|261339289|ref|ZP_05967147.1| hypothetical protein ENTCAN_05527 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319148|gb|EFC58086.1| helicase IV [Enterobacter cancerogenus ATCC 35316]
          Length = 684

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   +   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 389 IKLMGPMLKAWKTALKAENAVDFSGLIHQAIIILEK--------GRFVSPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L           +   +LFAVGD+ Q+IY F GA+             
Sbjct: 441 DISPQRAALLSALR--------AQNKHTSLFAVGDDWQAIYRFSGAQLALTTAFHHYF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +    +L  ++R  + I  + ++      +      +S TT   ++
Sbjct: 491 ------GEGDRSDLDTTYRFNSRIGEIANRFIQQNPHQLAKPLNSLTTGDKKA 537



 Score = 45.7 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 51/377 (13%), Positives = 110/377 (29%), Gaps = 45/377 (11%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGTDTIFS 364
           V+ W+Q  S+  +Q    ++      +             LARR+   +   +    +  
Sbjct: 308 VKTWQQQCSEKKAQAKGWRQWLEDELNWEVPEGSFWQDDKLARRLGSRLDRWVSLMRMHG 367

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKD 420
             +  +I++    +     K   L+  + +     LK +  +   G     +      + 
Sbjct: 368 GSQAEMIESAPEAIRAVFSKRIKLMGPMLKAWKTALKAENAVDFSGLIHQAIIILEKGRF 427

Query: 421 LMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETETVYEYI 470
           +      ++ +  D+S                + LF   +D          +      + 
Sbjct: 428 VSPWKHILVDEFQDISPQRAALLSALRAQNKHTSLFAVGDDWQAIYRFSGAQLALTTAFH 487

Query: 471 QKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
             F     S           I E+ +     +PH     +     G ++ ++       +
Sbjct: 488 HYFGEGDRSDLDTTYRFNSRIGEIANRFIQQNPHQLAKPLNSLTTGDKKAVTLL---ADE 544

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L+  L+      +     L        +     K A      ++  MT+H +KG ++  
Sbjct: 545 QLEPLLDKLSGYAKPEECILVLARYHHLKPAALEKAATRWPKLQLEFMTIHASKGQQADY 604

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V +V                               P     + I   L+   +     E 
Sbjct: 605 VIVVGLKEGS----------------------DGFPAPARESVIEQALLPVPEDFPDAEE 642

Query: 648 NRLLYVGMTRASDQLII 664
            RLLYV +TRA  ++ +
Sbjct: 643 RRLLYVALTRARHRVWL 659


>gi|315504945|ref|YP_004083832.1| uvrd/rep helicase [Micromonospora sp. L5]
 gi|315411564|gb|ADU09681.1| UvrD/REP helicase [Micromonospora sp. L5]
          Length = 553

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 70/502 (13%), Positives = 143/502 (28%), Gaps = 98/502 (19%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE---EAKKKNCVLDFEDLIINTND 158
           +    F          ++  +   +LT    LN  Y    + +     + F DL+    +
Sbjct: 87  QLAARFDSFTFHAFAKRLIDNFRPALTGQNALNPDYRIDPDTRIAREQITFADLVPLALE 146

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           +++     A+ R  I Q   H+ +DE QD +  Q+ +I++                 L A
Sbjct: 147 IVEAN---AYARGGIRQTYRHVFLDEFQDCTTQQYRLIKAAFGQSPA---------LLTA 194

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD KQ I  + GA    +         R          + L  +FRS   +  + +++ 
Sbjct: 195 VGDTKQRIMVWAGALDGVLQTFAEDFSAR---------PLPLYQNFRSAPRLRRMQNRMI 245

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           +  +            +       G  G +++        +                   
Sbjct: 246 AQMD---------PEAVSPAQDLAGDDGIIEVLHFDTEHDE------------------- 277

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A+ +A  I   +             +   +I +LVR  +   L+         
Sbjct: 278 -------AQAVADLIEGWLKE----------SVAPSEIAILVR--QQPHLVAAALGSELR 318

Query: 399 DYKISVV-GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF-NFSEDDIFKI 456
              I      +   L    A   +    R +       ++  +++     + SE++  + 
Sbjct: 319 GRGIPFRNEQESQDLAAEPAAALVFNFIRVVADDRQPDAYAELMRIANRLSASEEEASRF 378

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
            +Q            +       K       +HE + +                      
Sbjct: 379 DSQLKRMLGTARAAVRDPAFEAEKPGAWSPLVHEFLQLVSRPVLTALL------------ 426

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                G +    LD+ +   L             +  L +               +R +T
Sbjct: 427 ----PGYQQGKRLDDVIEQALEAFGRELVVDGNAVQALRRLSEV---------EAIRFLT 473

Query: 577 VHTAKGLESPVVFLVDTGSQVF 598
           +H  KGLE   V ++    Q+F
Sbjct: 474 IHKCKGLEFEKVVVLGVEEQLF 495


>gi|251788839|ref|YP_003003560.1| DNA helicase IV [Dickeya zeae Ech1591]
 gi|247537460|gb|ACT06081.1| UvrD/REP helicase [Dickeya zeae Ech1591]
          Length = 685

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 32/186 (17%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L L   L   +++A K    +DF  LI    + L K         +      HIL+DE Q
Sbjct: 389 LRLMAPLLKAWKKALKDEGAVDFSGLIHQAVNYLDK--------GRFVSPWRHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L           S   +LFAVGD+ Q+IY F GAE       +     
Sbjct: 441 DISPQRARLLEALRR--------QSPESSLFAVGDDWQAIYRFSGAELTLTTAFEPHF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                  + +   L  ++R    I  + ++                      S R G   
Sbjct: 491 ------GEGAQCVLDTTYRFNHRIGEIANRFIQQNPAQLKKV--------LNSLRDGDRK 536

Query: 307 TVQLWE 312
           +V L  
Sbjct: 537 SVVLLP 542



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 57/421 (13%), Positives = 125/421 (29%), Gaps = 50/421 (11%)

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
            +   +         +     T   HR +       +Q W+Q   +  +Q    ++  T 
Sbjct: 277 ALALHIIQQCSRRAPVVSRLETDGAHRRTF-----LIQHWQQQCDEKKTQAKGWRQWLTE 331

Query: 332 YFD---SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD----ILVLVRKRK 384
             +           + +A R+   +   +G   +    +  ++   D     L   R R 
Sbjct: 332 ELEWTLPEGNFWQDATIASRLVGRLERWLGVMRMQGGTQSEMLALADDETRPLFQQRLRL 391

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML--- 441
             PL+    + LK++  +   G     +      + +      ++ +  D+S        
Sbjct: 392 MAPLLKAWKKALKDEGAVDFSGLIHQAVNYLDKGRFVSPWRHILVDEFQDISPQRARLLE 451

Query: 442 ----KSP-----LFNFSEDDIFKICTQRHETETVYE-YIQKFANCGISKFQHVIKYIHEL 491
               +SP             I++         T +E +  + A C +         I E+
Sbjct: 452 ALRRQSPESSLFAVGDDWQAIYRFSGAELTLTTAFEPHFGEGAQCVLDTTYRFNHRIGEI 511

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
            +     +P     ++   + G ++ +     E    LD  L+            L    
Sbjct: 512 ANRFIQQNPAQLKKVLNSLRDGDRKSVVLLPQEQ---LDALLDKMSGYVAAQARILVLAR 568

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
               +     K      H  +  MT+H +KG ++  V ++            ++  ++ +
Sbjct: 569 YHHLRPDVLDKAQTRWPHLNLHFMTIHASKGQQADYVIVLGLHEGRDGFPAPQRESVLEA 628

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           +      P                          E  RLLYV +TRA  Q+ +    +  
Sbjct: 629 VLLPRPEPFPD----------------------AEERRLLYVALTRARHQVWLMYDRDEP 666

Query: 672 N 672
           +
Sbjct: 667 S 667


>gi|291281962|ref|YP_003498780.1| DNA helicase IV [Escherichia coli O55:H7 str. CB9615]
 gi|209774394|gb|ACI85509.1| DNA helicase IV [Escherichia coli]
 gi|290761835|gb|ADD55796.1| DNA helicase IV [Escherichia coli O55:H7 str. CB9615]
          Length = 684

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 44.5 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVLIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|152969548|ref|YP_001334657.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954397|gb|ABR76427.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 684

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 87/276 (31%), Gaps = 35/276 (12%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
           +S +    +        +  K+ Q  ++ +Q +           + L +    Q     +
Sbjct: 293 ISKLESDTAARRALLLKSWQKQCQ--EKKAQAKGWRLWLEEEMGWQLPEGDFWQD----K 346

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL----TLAKYLNAHYEEAKKK 143
           ++ ++     ++                     ++          L   L   ++ A K 
Sbjct: 347 KVQRRMAGRLDRWVSLM-RMHGGSQAEMIAGAPEAVRDLFSKRVKLMSPLMKDWKAALKA 405

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              +DF  LI    ++L K         +      HIL+DE QD S  +  ++ +L    
Sbjct: 406 ENAVDFSGLIHQAVNILDK--------GRFVSPWKHILVDEFQDISPQRASLLAALRR-- 455

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                  +S  TLFAVGD+ Q+IY F GA+                    +     L  +
Sbjct: 456 ------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFNHYF--------GEGDCCALDTT 501

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
           +R    I  + +       +      +S      ++
Sbjct: 502 YRFNGRIGEIANGFIQQNPHQLSKPLNSLMAGDKKA 537



 Score = 38.7 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 22/91 (24%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MT+H +KG ++  V ++       +     +  IM                        
Sbjct: 591 FMTIHASKGQQADFVIVLGLQEGEDAFPAPARESIME----------------------Q 628

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            L+   +     E  RLLYV +TRA  ++ +
Sbjct: 629 ALLPQPEDFPDAEERRLLYVALTRARHRVWL 659


>gi|120609372|ref|YP_969050.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120587836|gb|ABM31276.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
          Length = 599

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 83/567 (14%), Positives = 154/567 (27%), Gaps = 128/567 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y E  +++  +DFE ++     L+  R   + +  ++    + +LIDE QDT 
Sbjct: 161 LHAILGKYFEKLQESRQIDFELILYYAYQLIASRPAISVLLGQL---FSFVLIDEYQDTK 217

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ+ ++ ++      G+    +    F VGD  Q+IY   G  P      K       T
Sbjct: 218 RIQYSIVTAI---LKAGQGATKA----FIVGDPNQAIYQSLGGYPIAFEDFK-------T 263

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
            AG     +EL  ++RS+  I+              G      T I   S        V 
Sbjct: 264 MAGIDLKKLELSKNYRSSERIID-----------YFGNYNVHDTCIEAASDEKSYPSLV- 311

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                S+  ++ +    + L R I + I                
Sbjct: 312 ---------------------SFDATVNKTGLEAELIRLIRFNIE-------------TV 337

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I   ++ VL         +  +TR L              +            L +  L
Sbjct: 338 GIAPHEVCVLAP---QWTHLASMTRRLCASMPEYSFDGPGMVPFARDTENFWYRLSKIAL 394

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +Q     +V  L+      ++ +       +   +++                       
Sbjct: 395 TQASPGMYVRRLRWAGEILTDLEAAGASVSKLTRKSLLRECNAIKIDETDGL-------- 446

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
                        FF  +  +     +  +       +    F +      Q   + L+ 
Sbjct: 447 --------TYLSTFFERLFSSLAIDFRLFTTL----REHHTAFFDS----SQARVARLKS 490

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
             SE         R    +   + I T+H  KG E  VV        +  H +       
Sbjct: 491 EGSEFI-GDIGTFRKVFQSRTGITISTIHGVKGAEFDVVIAYALLEDMVPHFNDPNG--- 546

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                             QE   +LLYV  +RA   L +     
Sbjct: 547 ----------------------------------QESAMKLLYVIGSRARKNLHLISERG 572

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +   ++      +       ++V 
Sbjct: 573 RIRQYSGDEYQVTRKLAACSFGYDQVP 599


>gi|194398690|ref|YP_002037962.1| ATP-dependent DNA helicase [Streptococcus pneumoniae G54]
 gi|194358357|gb|ACF56805.1| ATP-dependent DNA helicase [Streptococcus pneumoniae G54]
 gi|319412009|emb|CBY91942.1| ATP-dependent DNA helicase (UvrD) [Streptococcus pneumoniae]
          Length = 605

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/517 (14%), Positives = 152/517 (29%), Gaps = 124/517 (23%)

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           D + +IR  +    + + +DE QDT+  Q++++++             S   L AVGD+K
Sbjct: 194 DTNEYIRKALQMTYDFVFLDEFQDTTYAQYDLLKTCFL---------GSSCKLTAVGDDK 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+I  + GA+P       R             +  +L ++ RS   ++            
Sbjct: 245 QAIMRWAGAKPDIFPDYIRDF---------NPNEYQLLMNHRSVPKLVEF---------- 285

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                    ++ + + S H S        +     +L +  + S
Sbjct: 286 -----------------------QKEVHQILNSNHSSIQTNNYPEFQEGEITLFEFENES 322

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
           + A+ IA  I + I             I+  +I +L +++            + N   I 
Sbjct: 323 LEAKLIANDIESKIQGG----------IRPSEICILAKQKVGIYSFE--LISILNSKGIK 370

Query: 404 VVGN-DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                +   +        L+ L      + D L +  +          D++         
Sbjct: 371 ARIENEYQDILKDPTCNLLLDLISCSQGKRDPLIWENISNFYGNINGIDELTDELILAKS 430

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +   +        +   +    +             D     +  K+    F +  G
Sbjct: 431 YKEIDNIVSDITYLISNFIPNEESMLK----------LIDCIIEKIDEKRIISNFSTYNG 480

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              +D++ +  +  L  E +           L+              N + IMT+H +KG
Sbjct: 481 KSDLDIIVKNFSKLLYIEYSQTQG-----EWLDTVS------SFKGENSIPIMTIHKSKG 529

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE  VV+ +      F   +                                        
Sbjct: 530 LEYEVVYFLGLEDSAFWSFNN--------------------------------------- 550

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
             EE     +V ++RA   LI       +N  ++N+ 
Sbjct: 551 QPEEDKSAFFVALSRAKSHLIFTYCKLRNNSPQNNRN 587


>gi|218700518|ref|YP_002408147.1| DNA helicase IV [Escherichia coli IAI39]
 gi|218370504|emb|CAR18311.1| DNA helicase IV [Escherichia coli IAI39]
          Length = 684

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPAGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPAGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|16128929|ref|NP_415482.1| DNA helicase IV [Escherichia coli str. K-12 substr. MG1655]
 gi|89107812|ref|AP_001592.1| DNA helicase IV [Escherichia coli str. K-12 substr. W3110]
 gi|157160483|ref|YP_001457801.1| DNA helicase IV [Escherichia coli HS]
 gi|170080620|ref|YP_001729940.1| DNA helicase IV [Escherichia coli str. K-12 substr. DH10B]
 gi|188495557|ref|ZP_03002827.1| helicase IV [Escherichia coli 53638]
 gi|194440051|ref|ZP_03072107.1| helicase IV [Escherichia coli 101-1]
 gi|238900220|ref|YP_002926016.1| DNA helicase IV [Escherichia coli BW2952]
 gi|253774008|ref|YP_003036839.1| DNA helicase IV [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161076|ref|YP_003044184.1| DNA helicase IV [Escherichia coli B str. REL606]
 gi|256023336|ref|ZP_05437201.1| DNA helicase IV [Escherichia sp. 4_1_40B]
 gi|293414242|ref|ZP_06656891.1| helicase IV [Escherichia coli B185]
 gi|301022514|ref|ZP_07186389.1| UvrD/REP helicase [Escherichia coli MS 196-1]
 gi|307137592|ref|ZP_07496948.1| DNA helicase IV [Escherichia coli H736]
 gi|2506500|sp|P15038|HELD_ECOLI RecName: Full=Helicase IV; AltName: Full=75 kDa helicase
 gi|1651471|dbj|BAA35727.1| DNA helicase IV [Escherichia coli str. K12 substr. W3110]
 gi|1787196|gb|AAC74048.1| DNA helicase IV [Escherichia coli str. K-12 substr. MG1655]
 gi|157066163|gb|ABV05418.1| helicase IV [Escherichia coli HS]
 gi|169888455|gb|ACB02162.1| DNA helicase IV [Escherichia coli str. K-12 substr. DH10B]
 gi|188490756|gb|EDU65859.1| helicase IV [Escherichia coli 53638]
 gi|194421015|gb|EDX37046.1| helicase IV [Escherichia coli 101-1]
 gi|238860821|gb|ACR62819.1| DNA helicase IV [Escherichia coli BW2952]
 gi|242376777|emb|CAQ31490.1| DNA helicase IV [Escherichia coli BL21(DE3)]
 gi|253325052|gb|ACT29654.1| UvrD/REP helicase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972977|gb|ACT38648.1| DNA helicase IV [Escherichia coli B str. REL606]
 gi|253977191|gb|ACT42861.1| DNA helicase IV [Escherichia coli BL21(DE3)]
 gi|260449892|gb|ACX40314.1| UvrD/REP helicase [Escherichia coli DH1]
 gi|291434300|gb|EFF07273.1| helicase IV [Escherichia coli B185]
 gi|299881211|gb|EFI89422.1| UvrD/REP helicase [Escherichia coli MS 196-1]
 gi|309701241|emb|CBJ00541.1| helicase IV [Escherichia coli ETEC H10407]
 gi|315135611|dbj|BAJ42770.1| DNA helicase IV [Escherichia coli DH1]
 gi|315619158|gb|EFU99738.1| helicase IV [Escherichia coli 3431]
 gi|323938067|gb|EGB34329.1| UvrD/REP helicase [Escherichia coli E1520]
 gi|323942877|gb|EGB39042.1| UvrD/REP helicase [Escherichia coli E482]
 gi|323962848|gb|EGB58423.1| UvrD/REP helicase [Escherichia coli H489]
          Length = 684

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 45.3 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|188534225|ref|YP_001908022.1| DNA helicase IV [Erwinia tasmaniensis Et1/99]
 gi|188029267|emb|CAO97144.1| Helicase IV [Erwinia tasmaniensis Et1/99]
          Length = 684

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 82/264 (31%), Gaps = 31/264 (11%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKK-SPDLKEKLK 101
             + +++A  ++   Q    ++  +     +LT +        T   + + +  L  +L+
Sbjct: 298 TDSDMRQALLIEVWRQQCSEKKAQANGWRQWLTDELKWDLPDGTFWQDDRLARQLASRLE 357

Query: 102 KSQD--EFIKIRDRFNTYKMFKSTLASLT----LAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           +                    ++     T    L   L   ++ A K+   +DF  LI  
Sbjct: 358 RWLGLMRMHGGTQAEMIESAPEAVRLLFTKRVKLMAPLMKAWKGALKEEGAIDFAGLIHQ 417

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
             +LL K         +      HIL+DE QD S                     ++  +
Sbjct: 418 AVNLLDK--------GRFISPWKHILVDEFQDISPQ--------RAALLAALRRQNTQSS 461

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           LFAVGD+ Q+IY F GA+                          L  ++R    I  V +
Sbjct: 462 LFAVGDDWQAIYRFSGADMALTTAFHHYFGA--------GDHCVLDTTYRFNQRIGEVAN 513

Query: 276 KVFSIPENAQGLSEDSTTTIRHRS 299
                         +  +    +S
Sbjct: 514 AFVQANPAQLKKPLNGLSKGNKKS 537



 Score = 45.3 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 57/377 (15%), Positives = 114/377 (30%), Gaps = 45/377 (11%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGTDTIFS 364
           +++W Q  S+  +Q N  ++  T                 LAR++A  +   +G   +  
Sbjct: 308 IEVWRQQCSEKKAQANGWRQWLTDELKWDLPDGTFWQDDRLARQLASRLERWLGLMRMHG 367

Query: 365 NGKKRVIQAKDILVLV----RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             +  +I++    V +    R +   PL+      LK +  I   G     +      + 
Sbjct: 368 GTQAEMIESAPEAVRLLFTKRVKLMAPLMKAWKGALKEEGAIDFAGLIHQAVNLLDKGRF 427

Query: 421 LMALGRFILSQEDDLSFVCMLKSPL------------FNFSEDDIFKICTQRHETETVYE 468
           +      ++ +  D+S                            I++         T + 
Sbjct: 428 ISPWKHILVDEFQDISPQRAALLAALRRQNTQSSLFAVGDDWQAIYRFSGADMALTTAFH 487

Query: 469 YIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +      +C +       + I E+ +     +P      + G  KG ++ IS    E ++
Sbjct: 488 HYFGAGDHCVLDTTYRFNQRIGEVANAFVQANPAQLKKPLNGLSKGNKKSISLLPEEQLE 547

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
                LN      +     L        +     K A       +   T+H +KG ++  
Sbjct: 548 P---LLNKISGYAKPDERILLLSRYHHLRPEVLNKAATRWPKLNIEFSTIHASKGQQADY 604

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V ++                         G P    +S   + ++             E 
Sbjct: 605 VIVLGLSEGK------------------EGFPAAARESVMEDALLPVPEDFPHA----EE 642

Query: 648 NRLLYVGMTRASDQLII 664
            RL YV MTRA  Q+ +
Sbjct: 643 RRLAYVAMTRARQQVWL 659


>gi|294635655|ref|ZP_06714129.1| helicase IV [Edwardsiella tarda ATCC 23685]
 gi|291090985|gb|EFE23546.1| helicase IV [Edwardsiella tarda ATCC 23685]
          Length = 694

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 76/281 (27%), Gaps = 27/281 (9%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           + +  +     +         +   L  +         A+  QQ +  +   + +    +
Sbjct: 281 AAKTFHALALQIVEQAGRKPVRLSRLESDRQARHDFLLAEWCQQCATKKSQAKGWRQWLA 340

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEK---LKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
               +    +     + +  +          L + Q              +       L 
Sbjct: 341 SLFDETPLEEAFWQDKALQARLAPRLAYWVGLLREQGASQAAMTALAPEALRVPFQQQLR 400

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L   L   ++   K+   LDF  LI     LL+K         +      HIL+DE QD 
Sbjct: 401 LLAPLLKAWKAELKREAALDFPALIQQVLALLEK--------GRFISPWKHILVDEFQDI 452

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           S                     +S   LFAVGD+ Q+IY F GA                
Sbjct: 453 SPQ--------RARLLAALRRQNSHSALFAVGDDWQAIYRFSGAALTLTTAFHHHF---- 500

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
                      L  ++R    I  + +       +    S 
Sbjct: 501 ----GDGECCPLDTTYRFNRRIGEIANGFVQQNPHQLKKSL 537



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            + +      C +       + I E+ +     +PH     +     G +Q ++      
Sbjct: 496 FHHHFGDGECCPLDTTYRFNRRIGEIANGFVQQNPHQLKKSLTSLCAGERQAVTLLP--- 552

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            D L+  L+          S L        +     + A      ++R MT+H +KG E+
Sbjct: 553 QDQLEALLDKLSSYVHAEESILILARYHHLRPALLARAATRWPGLDLRFMTIHASKGCEA 612

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V ++                               P +   + I   L+   +     
Sbjct: 613 DYVIVLGLHEGD----------------------DGFPAATRESVIEQVLLPDSEAFPDA 650

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 651 EERRLLYVALTRARRRVWL 669


>gi|238764001|ref|ZP_04624957.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia kristensenii ATCC 33638]
 gi|238697818|gb|EEP90579.1| DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit,
           ssDNA endonuclease [Yersinia kristensenii ATCC 33638]
          Length = 154

 Score = 96.9 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 19/122 (15%)

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
             L++      +   I       +IDE QDT   Q+ +  +L                L 
Sbjct: 3   AALQQPG-GELLAQSIRIRYPVAMIDEFQDTDPQQYRIFHTLYGG--------QGECGLL 53

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            +GD KQ+IY+F GA+    +R +       T          L  ++RS+  ++  V+++
Sbjct: 54  LIGDPKQAIYAFRGADIFTYIRARSEVSAHYT----------LETNWRSSFPMVQSVNRL 103

Query: 278 FS 279
           FS
Sbjct: 104 FS 105


>gi|218677632|ref|ZP_03525529.1| UvrD/REP helicase [Rhizobium etli CIAT 894]
          Length = 213

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 87/233 (37%), Gaps = 23/233 (9%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT--LQQASQTQCIE 63
              +    E I +D+       ++D   +       G   +   AQ   L         E
Sbjct: 2   AAEMARRVERICRDVLGANAGVMADALHWSGTFHGIGARLLRDYAQQIGLDADFTIHDRE 61

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           +   L++       F+  ++    +    +      +         +RD F     ++  
Sbjct: 62  DSADLMNLIRHDLGFSKTESRFPAKGTCLAI-YSRAVNSETALDEVLRDAFPWCATWEKQ 120

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                  + L A Y EAK+   VLD++DL++    ++ +  ++  I        +H+L+D
Sbjct: 121 ------LRELFACYVEAKQAQNVLDYDDLLLYWAQMVGESVIAEDI----GSRFDHVLVD 170

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QDT+ +Q  ++ +L              + L  VGD+ QSIYSF  A  + 
Sbjct: 171 EYQDTNRLQASILMAL----------KPQGQGLTVVGDDAQSIYSFRAATVRN 213


>gi|283457706|ref|YP_003362292.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
 gi|283133707|dbj|BAI64472.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18]
          Length = 1279

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/623 (9%), Positives = 158/623 (25%), Gaps = 150/623 (24%)

Query: 436  SFVCMLKSPLFNFSEDDIFKICT-----------QRHETETVYEYIQKFANCGISKFQHV 484
            S + +L S L   S  D+ ++              R   + +   +              
Sbjct: 543  SAITLLTSRLGGASSMDVRRLRQQLRSIELQSGGHRPSDDLLLGALLHPETLPEEGVGRA 602

Query: 485  IKYIHELIHI------AQFCSPHDFFTLILGAKKGRQQFISR------FGNEVIDVLDE- 531
            +  I  ++            +  +    +  A    + ++++        +     LD  
Sbjct: 603  VHRIAAVLSAGRKALARPESTSTEVLWALWEASGLEKTWVTQSRGAGPDADAAHRNLDAM 662

Query: 532  --FLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKGLESP 586
                    R  EQ   +  ++ +  ++     +    +     + V I+T   A G    
Sbjct: 663  IGLFEAADRFDEQMRGAGAEQFLDFIDAQDLPMDTLAARGVRQDAVEILTPALAAGQSWR 722

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDD-----------PGIPIWIPQSKSRNNIVSDL 635
             V++       + +  ++   +      D                     +         
Sbjct: 723  TVYVCGLQEGTWPNTTVRGSLLSTGDLTDLCDARLRQRAQQAEQQAGESEQPVPPARIRS 782

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                 + T+ +  R+  V  TRAS +L++    N                 ++   +  +
Sbjct: 783  YPERVRDTRHDELRMFAVAATRASTRLVLTAVRNDDQAPGEFFDFVLPTDAENESPEVPI 842

Query: 696  KKIKLTNSI---------------------------------NKDEWIAYEWSTHHPENT 722
             +++   ++                                  ++E +  E ST+  +  
Sbjct: 843  TRVRRPATLRSLVAELRRTLVEESLNAMRAEDAQDGAPAGSMPEEEALTPEASTYRLDAA 902

Query: 723  PLEREETIKQLMDEQKIPKKL--------------------------FSPIKNDINEPYI 756
                                                             P +    +P  
Sbjct: 903  SRTLARLANAQAPGAAPDDWWGLLPLSSTELLFAHRPADHAEDENHSEEPAEEQAEKPSR 962

Query: 757  ----LNPSTIDTKGKTNLESLLSDNQT-------FNRGLIIHKLLQVIFTLPEHKRKNFI 805
                L+PS ++T   + L+ L+S  +         + G +IH + +   T    + +  +
Sbjct: 963  RTIALSPSRLETIHSSPLDWLVSAARAEAQTDLSRSLGTLIHAIAEEYPTGTLEELQTAL 1022

Query: 806  TSYC------TKNAKLWPAKEYKN-------LLLSITRLLENPMMTTAMSCD-------- 844
                       +       +  +        L     R++    ++              
Sbjct: 1023 DERISSLGVPARKEDETDEEYRERVPWESYALYERAKRMI--LRLSYYYRQHMGDAGWQN 1080

Query: 845  --------SYSEVSVSGKINCPKKDIIISGRIDQI-----SISQQNIF-IFEYKTHHHVP 890
                        V         + D +++GR+D++     +      + I + KT    P
Sbjct: 1081 LGVEGSFAVRVPVPFDPAGEVGELDALLTGRVDRLEGTAPAEDGTRRYAIVDLKTGKSKP 1140

Query: 891  QEIEHIPYTHIAQLSIYEKILKD 913
               E        QL+ Y+  ++ 
Sbjct: 1141 TGSEMET---HPQLAAYQIAVEA 1160



 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 54/457 (11%), Positives = 128/457 (28%), Gaps = 65/457 (14%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
               ++   ++     DL      +        +L + +G    +   + L   ++    
Sbjct: 58  RSLSVAPTRAWAAYAFDLLKRAQTRGLLSGVEGNLKLLSGPEQDVIIGELLANHAEGIAP 117

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
              +              +  + T+    +  D  +++ +       +          + 
Sbjct: 118 GPAW----------PDVLRDALATRGFRHEIRDFFDRMAE-----YDLTAEDVHALATEH 162

Query: 123 TLASLTLAKYLNAHYE--EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
              +      L+  Y    A +     D   LI +   LL +   +     +  +  + I
Sbjct: 163 NQPAWHALAQLHTEYRAVRALRAKNAYDPAVLINDACRLLLR---APEFLAEERRRYDLI 219

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTH--SSPRTLFAVG-------DEKQSIYSFHG 231
           LID+VQ+ S   + ++R +  +       H   +   LFA G        ++  +  F G
Sbjct: 220 LIDDVQELSPSIYRLLRLIAAEVAPADAAHLTETHPDLFAEGPRVVMTYSDEAVVQGFRG 279

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           A P  V   +                  L  S+R  A ++ +V  +             +
Sbjct: 280 ARPDLVTTLQASFP--------SMRTRTLTTSYRLPALMMPLVADIRRRLPRYTRFVPLT 331

Query: 292 TTTIRHRSSRIGQV--------GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                 ++              G +       +      +       +    L      +
Sbjct: 332 AEQEGTKNGAQEGSKNGAPATFGRINTTPADEALTWGAADEPLLHLGADGKILDPAHYRT 391

Query: 344 ILA----------RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
             A          +  A  I+ M+  + I+ N   R     +  ++VR   D        
Sbjct: 392 APAGVYKYALSSSQDEANLIAQMLLEERIYGNHPYR-----ESAIIVRSSADVAR----I 442

Query: 394 RFLKNDYKISVVGNDRF-ILTDHLAIKDLMALGRFIL 429
           R + +   I    +     + D  A++  +     ++
Sbjct: 443 RRVLSSNGIPSRTSAALVPVRDEPAVRPFLDALSLLV 479


>gi|15800821|ref|NP_286837.1| DNA helicase IV [Escherichia coli O157:H7 EDL933]
 gi|15830300|ref|NP_309073.1| DNA helicase IV [Escherichia coli O157:H7 str. Sakai]
 gi|168751278|ref|ZP_02776300.1| helicase IV [Escherichia coli O157:H7 str. EC4113]
 gi|168758918|ref|ZP_02783925.1| helicase IV [Escherichia coli O157:H7 str. EC4401]
 gi|168765223|ref|ZP_02790230.1| helicase IV [Escherichia coli O157:H7 str. EC4501]
 gi|168777449|ref|ZP_02802456.1| helicase IV [Escherichia coli O157:H7 str. EC4196]
 gi|168780909|ref|ZP_02805916.1| helicase IV [Escherichia coli O157:H7 str. EC4076]
 gi|168787395|ref|ZP_02812402.1| helicase IV [Escherichia coli O157:H7 str. EC869]
 gi|168801336|ref|ZP_02826343.1| helicase IV [Escherichia coli O157:H7 str. EC508]
 gi|195935149|ref|ZP_03080531.1| DNA helicase IV [Escherichia coli O157:H7 str. EC4024]
 gi|208805656|ref|ZP_03247993.1| helicase IV [Escherichia coli O157:H7 str. EC4206]
 gi|208815646|ref|ZP_03256825.1| helicase IV [Escherichia coli O157:H7 str. EC4045]
 gi|209400242|ref|YP_002269630.1| helicase IV [Escherichia coli O157:H7 str. EC4115]
 gi|217324124|ref|ZP_03440208.1| helicase IV [Escherichia coli O157:H7 str. TW14588]
 gi|254792162|ref|YP_003076999.1| DNA helicase IV [Escherichia coli O157:H7 str. TW14359]
 gi|261227465|ref|ZP_05941746.1| DNA helicase IV [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256112|ref|ZP_05948645.1| DNA helicase IV [Escherichia coli O157:H7 str. FRIK966]
 gi|12514147|gb|AAG55448.1|AE005286_7 DNA helicase IV [Escherichia coli O157:H7 str. EDL933]
 gi|13360506|dbj|BAB34469.1| DNA helicase IV [Escherichia coli O157:H7 str. Sakai]
 gi|187767340|gb|EDU31184.1| helicase IV [Escherichia coli O157:H7 str. EC4196]
 gi|188014697|gb|EDU52819.1| helicase IV [Escherichia coli O157:H7 str. EC4113]
 gi|189001300|gb|EDU70286.1| helicase IV [Escherichia coli O157:H7 str. EC4076]
 gi|189354358|gb|EDU72777.1| helicase IV [Escherichia coli O157:H7 str. EC4401]
 gi|189364952|gb|EDU83368.1| helicase IV [Escherichia coli O157:H7 str. EC4501]
 gi|189372675|gb|EDU91091.1| helicase IV [Escherichia coli O157:H7 str. EC869]
 gi|189376521|gb|EDU94937.1| helicase IV [Escherichia coli O157:H7 str. EC508]
 gi|208725457|gb|EDZ75058.1| helicase IV [Escherichia coli O157:H7 str. EC4206]
 gi|208732294|gb|EDZ80982.1| helicase IV [Escherichia coli O157:H7 str. EC4045]
 gi|209161642|gb|ACI39075.1| helicase IV [Escherichia coli O157:H7 str. EC4115]
 gi|209774388|gb|ACI85506.1| DNA helicase IV [Escherichia coli]
 gi|209774390|gb|ACI85507.1| DNA helicase IV [Escherichia coli]
 gi|209774392|gb|ACI85508.1| DNA helicase IV [Escherichia coli]
 gi|209774396|gb|ACI85510.1| DNA helicase IV [Escherichia coli]
 gi|217320345|gb|EEC28769.1| helicase IV [Escherichia coli O157:H7 str. TW14588]
 gi|254591562|gb|ACT70923.1| DNA helicase IV [Escherichia coli O157:H7 str. TW14359]
 gi|320188698|gb|EFW63358.1| DNA helicase IV [Escherichia coli O157:H7 str. EC1212]
 gi|320637830|gb|EFX07622.1| DNA helicase IV [Escherichia coli O157:H7 str. G5101]
 gi|320642955|gb|EFX12156.1| DNA helicase IV [Escherichia coli O157:H- str. 493-89]
 gi|320648412|gb|EFX17067.1| DNA helicase IV [Escherichia coli O157:H- str. H 2687]
 gi|320653728|gb|EFX21802.1| DNA helicase IV [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320659571|gb|EFX27134.1| DNA helicase IV [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664342|gb|EFX31493.1| DNA helicase IV [Escherichia coli O157:H7 str. LSU-61]
 gi|326338892|gb|EGD62708.1| DNA helicase IV [Escherichia coli O157:H7 str. 1125]
 gi|326341711|gb|EGD65499.1| DNA helicase IV [Escherichia coli O157:H7 str. 1044]
          Length = 684

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 44.1 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVLIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|312971094|ref|ZP_07785273.1| helicase IV [Escherichia coli 1827-70]
 gi|310336855|gb|EFQ02022.1| helicase IV [Escherichia coli 1827-70]
          Length = 684

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 45.3 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|323976658|gb|EGB71746.1| UvrD/REP helicase [Escherichia coli TW10509]
          Length = 684

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 91/288 (31%), Gaps = 42/288 (14%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +   +  D        +++  K  S              + +Q +               
Sbjct: 292 TVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDD 345

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L ++   + +     +        E +  + +E   +  +             + L  
Sbjct: 346 EKLQRRLASRLDRWVSLMRMHGGAQAEMIANAPEEIRDLFSKR------------IKLMA 393

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  
Sbjct: 394 PLLKAWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQ 445

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+                  
Sbjct: 446 RAALLAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF------- 490

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +    +L  ++R  + I  V ++             +S T    ++
Sbjct: 491 -GEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 45.3 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIANAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|313894261|ref|ZP_07827826.1| putative ATP-dependent nuclease subunit B [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441085|gb|EFR59512.1| putative ATP-dependent nuclease subunit B [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 1176

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 82/715 (11%), Positives = 186/715 (26%), Gaps = 162/715 (22%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               A  +A  I   + +            + +D+ +++R   ++         +   Y 
Sbjct: 310 REREADAVARRILAYVESSP--------EARYRDVCIMLR---ESETYGDTLEKVFGRYG 358

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I    + +  + +H   + L A+   +       S   +LK+ L   S + + ++     
Sbjct: 359 IPHFIDRQRPMKNHPLGELLTAIFDIVRHNYSRDSMFLLLKTDLMPLSREAVDELENYVL 418

Query: 462 ETETVYEYIQKFANCGISKFQH----------------------VIKYIHELIHIAQFCS 499
           E    +   ++ +   +  F                        +++ +      A    
Sbjct: 419 EFGIDHYKWERESWPYLRGFHEGQDEEGHGDAPRRARVNQARQTIMEILSPWFDFAAHSE 478

Query: 500 PHDFFTLILGAKKGRQQFI--SRFGNEVIDV------------------LDEFLNFTLRN 539
            H             +      R      D                   +  F++     
Sbjct: 479 GHTGAEWGEQLYGLLETLQVPQRLYEWAQDAETVGDQESKASHEQMYNAVISFIDEISMV 538

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++   +L E++  LE+    +  +      + V I T+        P VF++     VF
Sbjct: 539 MKDEVLTLDEMMLLLEEGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVF 598

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                I   + +        L +        E   LLY+ MTRA
Sbjct: 599 PQSM------------GDEGLIKDKERQELAEAGITLAEGALPKAFNENF-LLYLAMTRA 645

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
           SD L +   S+  +            +    + D+    +++  SI  D    Y W    
Sbjct: 646 SDSLTLSYASSGEDGTGLEPSLVVKRLESLGYVDKA---VEIPLSIAPDTESDYVWRPLQ 702

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--------------------- 757
             +   ER   +    +   +   L++  +        L                     
Sbjct: 703 SLSLLSERWGALFSGHEVNPLWWGLYNWARESDTYRPRLGEVSRGIRDNNDVPVITKDLV 762

Query: 758 ------------NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIF 794
                       + + ++   +                 +        G  +H  L+ + 
Sbjct: 763 NGLFLSKGYMSGSVTRLERYQQCPFKFYAQYGLKLEPRRVRSFGAPEIGTFLHANLERLG 822

Query: 795 -----------TLPEHKR----KNFITSYCTKNAKLWPAKEY--KNLLLSITRLL----- 832
                       L E  +    +        +N       +   K +   + R L     
Sbjct: 823 NYLLDNNKQWRDLNEEDQQNLCRTVAEEILQENQGGEETSDAYQKAIEQRVQRTLHVTVD 882

Query: 833 -----------ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS--GRIDQISIS--QQN 877
                      +   +          +  +   +    +D  +   G+ID+I        
Sbjct: 883 RLVEWSKRSDFDTKYLEQDFGRQGGWD-PIRVPL---GEDRYLRLIGQIDRIDEYTRDGQ 938

Query: 878 IF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS----LVCLLIY 926
            +  + +YK+        + + Y    QL  Y   L+ SY        +   ++Y
Sbjct: 939 TYGMVIDYKSG-GAHVTAQDVYYGLKLQLMTYLLALESSYGKTQGESIVPAAVVY 992


>gi|291549062|emb|CBL25324.1| ATP-dependent nuclease subunit B [Ruminococcus torques L2-14]
          Length = 1146

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/676 (10%), Positives = 181/676 (26%), Gaps = 114/676 (16%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +    A+ +A  I  ++  +           + ++I V+     D            
Sbjct: 338 EVHTPQEEAQYVAEEIRRLVREE---------GYRYREIAVIA---SDLSTYADALEKAC 385

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
           + Y+I V  + +  +  +  ++ L +L   +       S    L++ L  F+ D++ ++ 
Sbjct: 386 DRYEIPVFMDHKKSILLNSFVEYLRSLLVMVEQNYTYESVFRYLRTSLCGFTRDEVDRLE 445

Query: 458 TQRHETETVYEYIQKFANCGISKF--QHVIKYIHELIHIAQF--CSPHDFFTLI-----L 508
                 +              +    +  ++ ++ L           H            
Sbjct: 446 NYCLALDLKGFKKWDQVWVRKTPMTTKEELEELNHLRMRFVEKLTPLHTVLKKRKKTVKE 505

Query: 509 GAKKGRQQFISRFGNEVIDVLDEF------LNFTLRNEQNSYSSLQELISELEQYPPTIK 562
                 +  +     E +  L++       L       Q     L+     +E       
Sbjct: 506 ITLAVYEYLVQEKIQEQLAELEQKFQEDGELALAKEYAQIYRIVLELFDKFVELLGEEEI 565

Query: 563 RAHS------------------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI- 603
                                  + ++V I  +   +      +F V     +       
Sbjct: 566 PLKEYCELLDAGLEEAKVGVIPPSLDQVVIGDMERTRIKNIRALFFVGANDTLLPGNAGA 625

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           + +             + +         +                  LY+ +T+ S+ L 
Sbjct: 626 RGLLSERDRKQFQEKKMNLSPGPKEKLYIQKFY--------------LYMNLTKPSELLY 671

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHND----------------------ERVKKIKLT 701
           +     +   K          +   F                         +  + ++  
Sbjct: 672 LSWAKVSGEGKALRPAYLIQDLMRLFPVLVPVEEDRKGLLDHEMMRKSGLLQIAEGLRER 731

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                D W          E +    ++ I+     +  P       K    +P  ++ + 
Sbjct: 732 EHGLDDSWKELYRWFVKDEQSQETLKQMIEAGFYRKDEPSLGSRVAKELFLDPKRVSVTR 791

Query: 762 IDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
           ++                  E      +  + G I H+ L+      E +  +++T    
Sbjct: 792 LERFASCAYAHFLNYGLRLSEREKYGFEAMDLGNIAHQALERFAHKVEEEGLDWVTMPEE 851

Query: 811 KNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYS--EVSVSGKINCPKK 860
           K  +L      +++L     +L +          +   ++   ++  +   +G       
Sbjct: 852 KRERLIDESVEESILDYGNTVLFSSARNEYMIHRIKQLINRSVWALTQQMAAGDFVPSGC 911

Query: 861 DIII-SGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
           +    SG+ID+I     +  ++  + +YKT      +I    +    QL +Y     +  
Sbjct: 912 EFKFGSGKIDRIDTCEDENAVYVKVTDYKTGRKAF-DITAFYHGLQMQLPVYLNAALEIE 970

Query: 916 ----PNKSLV-CLLIY 926
               P K ++   + Y
Sbjct: 971 RQKNPEKEVLPAGIFY 986


>gi|323973162|gb|EGB68354.1| UvrD/REP helicase [Escherichia coli TA007]
          Length = 673

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 45.3 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|300694593|ref|YP_003750566.1| DNA helicase, DNA helicase uvrd/rep type domain [Ralstonia
           solanacearum PSI07]
 gi|299076630|emb|CBJ35968.1| putative DNA helicase, DNA helicase UvrD/REP type domain [Ralstonia
           solanacearum PSI07]
          Length = 600

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 72/569 (12%), Positives = 142/569 (24%), Gaps = 129/569 (22%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + A Y      N  +DFE ++   + L++ +   A +   I    + ILIDE Q
Sbjct: 157 HERLHAVFAQYFRYLADNRQIDFEQILFYASRLIQGQPQIAKVLASI---FSWILIDEYQ 213

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT  IQ+ ++ ++T          +    LF VGD  Q+I+   G     +   +++   
Sbjct: 214 DTKRIQYSIVAAITR-------AGAERTKLFVVGDPNQAIFGSLGGFAMPLAEFRQL--- 263

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT--IRHRSSRIGQ 304
               +G +     L  ++RST  ++             +G + D      + +  +    
Sbjct: 264 ----SGIRLEERALTENYRSTDRLIRYFSNFTVQATGIRGAASDRAFPSNVSYNITVERD 319

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
               +L   +          +Q    +                   + I  ++   T   
Sbjct: 320 QLETELVRLIRLSTAQGFAAEQICILAP------------------WWI--LLAGVTRRL 359

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
            G     Q     ++   R        L+R    +                         
Sbjct: 360 AGALPEYQFDGPGMVPFSRDQENFWYRLSRIALTEA------------------------ 395

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
                S    +  +      + +   + I                IQ     G+   +  
Sbjct: 396 -----SPTQYVRRLRWAAEVIRDLGNEGINTPGLSAKWLLRESNSIQLNQPDGLLYLREF 450

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
              + E + I     P                 I R   E  + +D              
Sbjct: 451 FASLMERLGIDWQSHPL-LLEHHQAFFDSSAAKIDRLRREGAEFID-------------- 495

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
                             R    + + + + T+H  KG E  VV        +  H    
Sbjct: 496 -------------GIDFFRKVFQHRSGITVNTIHGVKGAEFDVVIAFGLLQGMVPHFS-- 540

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                           +       +   +LLYV  +RA   L +
Sbjct: 541 -------------------------------EEAGADRGTDSAKKLLYVVGSRARKHLHL 569

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                             + +     + +
Sbjct: 570 ISERQRMRGGGRGPYAATNALAACVFDYD 598


>gi|302542686|ref|ZP_07295028.1| putative ATP-dependent DNA helicase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460304|gb|EFL23397.1| putative ATP-dependent DNA helicase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 620

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 62/249 (24%), Gaps = 31/249 (12%)

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                  ++   + +    +L   +    ++  P     ++   L         +     
Sbjct: 369 PEEARLADSWDRDLDALAGELRRARATVHEVPVPHTLTASQLMRLAADPDGFARELARPM 428

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                    RG   H  ++        + +     +   +       +   +        
Sbjct: 429 PRPPQPAARRGTRFHAWVE-------SRFEALPLPFLGPDELPGGEDDEPEIADE----R 477

Query: 833 ENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRIDQISI-------SQQNIFIFE 882
           E   +  A +       +   V            + GRID +           Q   I +
Sbjct: 478 ELTALKEAFARTPYARRTPYRVEVPFQLTLAGRTVRGRIDAVYREPAAGAGDGQGYEIID 537

Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEPKVFIIPQNKL 940
           +KT      +          QL+IY     + +  P  ++    +YV   +V    +   
Sbjct: 538 WKTGRSQDADP--------LQLAIYRLAWAEQHGLPLSAVSAAFLYVRSGEVVRPAELPG 589

Query: 941 NKAFAEIST 949
                 I T
Sbjct: 590 RAELERILT 598



 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 87/315 (27%), Gaps = 19/315 (6%)

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVLDEFLNFT 536
           +F  +   + EL   +      D    +L       +  +          + L  FL+  
Sbjct: 2   RFARLAAELRELR-RSLADPLMDVLHRVLATTGLEVELSASPHALAARRRETLGNFLDVA 60

Query: 537 LRNEQ------NSYSSLQELISELEQYPPTI---KRAHSANHNEVRIMTVHTAKGLESPV 587
                      +  ++LQ  +  L            A     N V+++T H +KGLE  V
Sbjct: 61  ASFAAQAGGPVDGEATLQSFLGFLRTAAQYEKGLDNALPGGENTVKVLTAHKSKGLEWDV 120

Query: 588 VFLVDTGSQVFSHKHIKKMH-----IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           V +    ++ F  +  ++       ++P         +    +     + +     +K+ 
Sbjct: 121 VAVPGLVAKQFPSEQSRESWTANAKVLPHALRGDAATLPEVTAWDAKGL-NAFKDAMKEH 179

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            + E  RL YV  TR    L+   H    ++K+    + +     +       +     +
Sbjct: 180 QRTEELRLGYVTFTRPRSLLLGSGHWWGPSQKRHRGPSSFLEALRTHCEAGYGEVEAWAD 239

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
              +         T      PL  +                        + P   +P   
Sbjct: 240 EPEEGAENPALRETAADRAWPLPLDPEALARRRRAADAVLAHLTRLEAADGPPAADPHGP 299

Query: 763 DTKGKTNLESLLSDN 777
             +          + 
Sbjct: 300 VAEDDPAWPEFTDEP 314


>gi|295096303|emb|CBK85393.1| Superfamily I DNA and RNA helicases [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 692

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 67/173 (38%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   +   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 397 VKLMAPMLKAWKTALKDENAVDFSGLIHQAIIILEK--------GRFVSPWKHILVDEFQ 448

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L         T +   +LFAVGD+ Q+IY F GA+             
Sbjct: 449 DISPQRAALLSALR--------TQNKHTSLFAVGDDWQAIYRFSGAQLSLTTAFHHYF-- 498

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +    +L  ++R  + I  + ++      +      +S T+   ++
Sbjct: 499 ------GEGDRSDLDTTYRFNSRIGEIANRFIQQNPHQLSKPLNSLTSGDKKA 545



 Score = 44.5 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 106/358 (29%), Gaps = 45/358 (12%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            ++ SW     S  Q+     LARR+   +   +    +    +  +I++    +     
Sbjct: 338 EEELSWEVPEGSFWQD---EKLARRLGSRLDRWVSLMRMHGGSQAEMIESAPESIRAVFS 394

Query: 384 KDTPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           K   L+  + +     LK++  +   G     +      + +      ++ +  D+S   
Sbjct: 395 KRVKLMAPMLKAWKTALKDENAVDFSGLIHQAIIILEKGRFVSPWKHILVDEFQDISPQR 454

Query: 440 ML----------KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVIK 486
                        + LF   +D          +      +   F     S          
Sbjct: 455 AALLSALRTQNKHTSLFAVGDDWQAIYRFSGAQLSLTTAFHHYFGEGDRSDLDTTYRFNS 514

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            I E+ +     +PH     +     G ++ ++       D L+  L+      +     
Sbjct: 515 RIGEIANRFIQQNPHQLSKPLNSLTSGDKKAVTLL---ADDQLEPLLDKLSGYAKPDERI 571

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L        +     K A      ++  MT+H +KG ++  V +V               
Sbjct: 572 LVLARYHHLKPTALEKAATRWPKLQLDFMTIHASKGQQADYVIVVGLKEGS--------- 622

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                     G P    +S     ++             E  RLLYV +TRA  ++ +
Sbjct: 623 ---------DGFPAPARESVMEEALLPVPEDFPDA----EERRLLYVAITRARHRVWL 667


>gi|110804978|ref|YP_688498.1| DNA helicase IV [Shigella flexneri 5 str. 8401]
 gi|110614526|gb|ABF03193.1| DNA helicase IV [Shigella flexneri 5 str. 8401]
          Length = 707

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 87/276 (31%), Gaps = 42/276 (15%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 319 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 372

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 373 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 420

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 421 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 472

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 473 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 516

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +L  ++R  + I  V ++             +S
Sbjct: 517 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNS 552



 Score = 45.7 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 322 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 381

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 382 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 441

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 442 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 501

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 502 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKTV 561

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 562 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 618

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 619 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 662

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 663 ------AEERRLMYVALTRARHRVW 681


>gi|323967209|gb|EGB62633.1| UvrD/REP helicase [Escherichia coli M863]
 gi|327253754|gb|EGE65383.1| helicase IV [Escherichia coli STEC_7v]
          Length = 684

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 91/288 (31%), Gaps = 42/288 (14%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +   +  D        +++  K  S              + +Q +               
Sbjct: 292 TVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDD 345

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L ++   + +     +        E +  + +E   +  +             + L  
Sbjct: 346 EKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMA 393

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  
Sbjct: 394 PLLKAWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQ 445

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+                  
Sbjct: 446 RAALLAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF------- 490

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +    +L  ++R  + I  V ++             +S T    ++
Sbjct: 491 -GEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 44.9 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|204930808|ref|ZP_03221681.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320267|gb|EDZ05471.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 684

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q A                 L 
Sbjct: 296 LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWAVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +   +         
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTFGED-------- 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEDEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|194366252|ref|YP_002028862.1| UvrD/REP helicase [Stenotrophomonas maltophilia R551-3]
 gi|194349056|gb|ACF52179.1| UvrD/REP helicase [Stenotrophomonas maltophilia R551-3]
          Length = 917

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 36/257 (14%)

Query: 41  TGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKL 100
                +L  A+ L +            L             K +   ++           
Sbjct: 480 RSGHALLDLAEKLGECDIELDPNPDREL--------PDQGAKPMPDADLIGLMRTFIAHA 531

Query: 101 KKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           K +      +  R       +  +     L +A  +   ++ A      +DFED++    
Sbjct: 532 KSNCLTLDDMAARLRQMPEDQFKERHRRFLEIAGPVFQAWDNALADERGIDFEDMLNMAA 591

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            LL+        + + +   + ++ DE QD S  +  + R+L              R LF
Sbjct: 592 GLLE--------QGRYESPYDLVMADEFQDASRARARLCRALVS---------QPGRHLF 634

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           AVGD+ QSI  F GA+   +   +               +++L  +FR    +  V  + 
Sbjct: 635 AVGDDWQSINRFAGADVSVMTGFRE--------WMGHGQVLKLEQTFRCPQALCDVSGRF 686

Query: 278 FSIPENAQGLSEDSTTT 294
            S           S   
Sbjct: 687 ISRNPAQITKEVRSAAP 703



 Score = 42.6 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 24/91 (26%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V  +T H +KG E+  V L    ++ F         +  ++ D    P            
Sbjct: 777 VEFLTAHRSKGREADYVILPGMINRSFPSLRADDPALSLAMPDGDTYP------------ 824

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                         E  RL YV +TRA   +
Sbjct: 825 ------------LSEERRLFYVALTRARRSV 843


>gi|117928978|ref|YP_873529.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B]
 gi|117649441|gb|ABK53543.1| ATP-dependent DNA helicase, Rep family [Acidothermus cellulolyticus
           11B]
          Length = 508

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 21/163 (12%)

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
              +  + +         L   YE  K     LDFED+++    LL+    +  +   + 
Sbjct: 161 LARRHGRVSAKPADETAALYDRYEALKSAAHCLDFEDVLLLLVALLETEPEAVRM---VR 217

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                 ++DE QD + ++  ++ +             S   +  VGD +Q+IY F GA  
Sbjct: 218 GRYQCFVVDEYQDVNALEQRLLDAWLG----------SRTEVCVVGDPRQAIYGFAGATD 267

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           + ++       +         +++ L  ++RST +IL    ++
Sbjct: 268 RYLVEFAERYPQ--------ATMVSLTRNYRSTQEILAAAHRL 302



 Score = 46.5 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 35/139 (25%), Gaps = 35/139 (25%)

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V I ++H AKGLE  VVFL      +        +                      
Sbjct: 389 AGAVTIASLHAAKGLEWEVVFLPGWADGILPDARALSV---------------------- 426

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                            E  RL YVG+TRA   L++    +     +  +      +   
Sbjct: 427 -------------DAVAEEQRLAYVGVTRARRMLVVSYPRSVQRAGERVECEPSRFLAAF 473

Query: 689 FHNDERVKKIKLTNSINKD 707
             +              K 
Sbjct: 474 AASARPAVGEPSVEPAEKP 492


>gi|331662375|ref|ZP_08363298.1| helicase IV (75 kDa helicase) [Escherichia coli TA143]
 gi|331060797|gb|EGI32761.1| helicase IV (75 kDa helicase) [Escherichia coli TA143]
          Length = 684

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|284048670|ref|YP_003399009.1| ATP-dependent nuclease subunit B-like protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952891|gb|ADB47694.1| ATP-dependent nuclease subunit B-like protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 1003

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 78/674 (11%), Positives = 162/674 (24%), Gaps = 106/674 (15%)

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           + +         +    +    L + +S     R    +I   +             +Q 
Sbjct: 257 LAALAREWKPGAKCGLAADHIHLGEGASQEQEIRLALTSIKERLQDG----------VQP 306

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           ++ILVLVRK +D              Y I         L        L  L      + D
Sbjct: 307 EEILVLVRKLQDYQG----LVRSFAQYGIPCRLPLPADLKSQPLPDFLTKLLAAAGEKWD 362

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF--QHVIKYIHEL 491
              +  + + PL         +     +            A+    +         +  L
Sbjct: 363 LSLWQALFRCPLMELLFQTDRENLDFLYTQAYFSSAGAFLAHVRRKELVSAGFWDLVDFL 422

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE--FLNFTLRNEQNSYSSLQE 549
                  +  D  T  L   +   +   +   E    LD+   L  T    + +  SL +
Sbjct: 423 QQDHTPEAWRDGLTEWLDRWQ-LARTWGQLHKEGKVDLDQVKLLAGTEDFVRKTLDSLVK 481

Query: 550 LIS-----------------ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                                 +                + +      +G   P V+++ 
Sbjct: 482 TWEQCGEEKSALGLDKIRTFWKDSLAQASLPLTPGEPRGIPVREAGEIQGAAFPYVYILG 541

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +F     +          +                   L   L     +       
Sbjct: 542 VREGMFPAVKRESWLYSDQERAELNAL--------------GLELSLTARALDTDRYFFG 587

Query: 653 VGMTRASDQLIICKHSNTSNEKKS---NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
                AS +L +  +S+              +Y          E       + ++  +  
Sbjct: 588 SAAALASRELHLSWYSDEEGGASPYITGLDHFYAPDSLPVTVYEADPDRCASPALLTNCL 647

Query: 710 IAYEWSTHHPENTPLER------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
              EW     + T L        + T       ++        +   + +P  L+ S++D
Sbjct: 648 AEQEWLGPREKETLLAAVGTDFSDRTQSARRRWEEPDSPWNGTVPGVVKKPLHLSASSLD 707

Query: 764 TKGKTNL-----------ESLLSDNQTFN--RGLIIHKLLQ-----VIFTLPEHKRKNFI 805
              +                   +        G ++H+ L       + T  E K +  +
Sbjct: 708 AFLQCPFAALVSRVWKLVPWEEQEPWPAPDVVGNLLHQTLAAFLGNHLQTGLEAKDREIL 767

Query: 806 TSYCTK-----------NAKLWPAKEYKNLLL----SITRLLENPMMTTAMSCDSYSEVS 850
                +             K+  +    ++       +   L   +   A          
Sbjct: 768 EQELEQVYQGIFDRFHQEGKIPDSPLLDHIRERYGKELRTWLRGELDYEARDQLGLKPWK 827

Query: 851 VSGKI------------NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
           V                    K +  SG+ID+I  + +   + +YKT        + I  
Sbjct: 828 VEWSFGREHSPWPALTRTVDGKKVWFSGQIDRIDSNGKTWSLLDYKTGQPP--TGQDILQ 885

Query: 899 THIAQLSIYEKILK 912
               QL +Y + L 
Sbjct: 886 GRAVQLPLYLEALA 899


>gi|219666707|ref|YP_002457142.1| UvrD/REP helicase [Desulfitobacterium hafniense DCB-2]
 gi|219536967|gb|ACL18706.1| UvrD/REP helicase [Desulfitobacterium hafniense DCB-2]
          Length = 602

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 88/647 (13%), Positives = 165/647 (25%), Gaps = 161/647 (24%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSF-----FLTQKFTPQKNIITQEINKKSPDLKEKLK 101
            + A+ L     TQ      S   +      F          +I   + K     +    
Sbjct: 82  REVAEKLPALLGTQNSPIAISEKVTVTNYHGFCKGVIKKYGFLIADALRKDVNLFRTVSD 141

Query: 102 KSQDEFIKIRDRFNT----------YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFED 151
              +    ++   +             + ++ +      +  N    +       +    
Sbjct: 142 SEIERQATLKTALSADEYEELKSVEIAVKEAHVPDSQTIQGYNEIVIKKLLPLGYITHNA 201

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +I+   ++  +    A ++         I++DE QDT+ I W ++ ++  +         
Sbjct: 202 VILFVLEMFDR---FAEVKKFYQSYYPLIVVDEFQDTNCIAWNLLEAIISERTQ------ 252

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               L  +GD  Q IY F GA P  +                  + + L  ++R      
Sbjct: 253 ----LIFLGDPLQRIYGFIGALPDIMTTVADKYG---------MTKVALSKNYR------ 293

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
                 F        L       IR  ++   +           +  D         W  
Sbjct: 294 ------FRNNSEMLKL----DRNIRANAATCFEP----------NIQDDDVARVPAFW-- 331

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                   S+    AR++   +  ++G  T              I +L R R        
Sbjct: 332 -------GSTQQEEARQVVAKVQGLMGDGTDK------------ITILFRGRGRNA---E 369

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
           +      D K+                                             F+++
Sbjct: 370 IVETELADKKVPYFYGM---------------------------------------FTDE 390

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
           D   +       E   +   K  N            +      A   +       +L A 
Sbjct: 391 DADYVDFHNKCQEMFIKRFGKSKNINKKALTAFSDRVKTAYASATGKTVDSLL-RLLDAL 449

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
              +  I        D  +  L+     E      L++ +  ++                
Sbjct: 450 -VEKVSIDYSDLLADDKYNLLLDI---FENRQ---LKQAMEYVDSQ-------------- 488

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + TVH AKGLE   V L D    VF           PSL                + +
Sbjct: 489 VILSTVHGAKGLEWDYVVLCDVEQWVF----TFLCRDCPSLRASGNSTACRLPQSIPDQM 544

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
           ++ L+         +   + YVG+TRA  Q  I       N +    
Sbjct: 545 LNPLL---------DDLCVFYVGLTRARKQAFISASGERFNARGQRF 582


>gi|170681833|ref|YP_001744207.1| DNA helicase IV [Escherichia coli SMS-3-5]
 gi|170519551|gb|ACB17729.1| helicase IV [Escherichia coli SMS-3-5]
          Length = 684

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +     +  L +++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 45.7 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|30062501|ref|NP_836672.1| DNA helicase IV [Shigella flexneri 2a str. 2457T]
 gi|56479783|ref|NP_706885.2| DNA helicase IV [Shigella flexneri 2a str. 301]
 gi|30040747|gb|AAP16478.1| DNA helicase IV [Shigella flexneri 2a str. 2457T]
 gi|56383334|gb|AAN42592.2| DNA helicase IV [Shigella flexneri 2a str. 301]
 gi|313650788|gb|EFS15189.1| helicase IV [Shigella flexneri 2a str. 2457T]
          Length = 684

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +     +  L +++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 46.1 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSGGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|82544714|ref|YP_408661.1| DNA helicase IV [Shigella boydii Sb227]
 gi|81246125|gb|ABB66833.1| DNA helicase IV [Shigella boydii Sb227]
 gi|332093340|gb|EGI98398.1| helicase IV [Shigella boydii 3594-74]
          Length = 684

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R  + I  V ++             +S T    ++  +     +  L +++
Sbjct: 494 ERCDLDTTYRFNSRIGKVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 45.3 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I ++ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGKVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|320175155|gb|EFW50265.1| DNA helicase IV [Shigella dysenteriae CDC 74-1112]
          Length = 684

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWQQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYRFNSRIGKVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 44.9 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 93/340 (27%), Gaps = 42/340 (12%)

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFL 396
               L RR+A  +   +    +    +  +I    ++I  L  KR     PL+      L
Sbjct: 344 DDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGAL 403

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIF 454
           K +  +   G     +      + +      ++ +  D+S      L +     S+  +F
Sbjct: 404 KAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLF 463

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDF 503
            +                        F                 I ++ +     +P   
Sbjct: 464 AVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRIGKVANRFIQQNPGQL 523

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              +     G ++ ++         LD  L+      +     L        +     K 
Sbjct: 524 KKPLNSLTNGDKKAVTLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKA 580

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
           A      ++  MT+H +KG ++  V +V             +  IM      P       
Sbjct: 581 ATRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD- 639

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                 E  RL+YV +TRA  ++ 
Sbjct: 640 ---------------------AEERRLMYVALTRARHRVW 658


>gi|300779090|ref|ZP_07088948.1| UvrD/REP helicase [Chryseobacterium gleum ATCC 35910]
 gi|300504600|gb|EFK35740.1| UvrD/REP helicase [Chryseobacterium gleum ATCC 35910]
          Length = 591

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 75/204 (36%), Gaps = 18/204 (8%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           K L   Y    K+  ++DFE ++  +  +L+       I  K+      I IDE QDT  
Sbjct: 153 KRLLEDYHSILKRKKLIDFELILFYSYKILQDLPRIPQILSKL---FKIICIDEYQDTQD 209

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           + + +I ++           +   + F VGD  Q+IYS  G   K + + K         
Sbjct: 210 LLYAIISTIVR-------AGNGETSAFFVGDTDQAIYSSLGGVAKNIEQIKEEL------ 256

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ--GLSEDSTTTIRHRSSRIGQVGTV 308
                  + L  ++RS+  I+    +  +   + +  G++  +   I   ++        
Sbjct: 257 NDLPIEPLTLKGNYRSSQRIIDFYRQFQTQSIDIKAVGINAKTKGLITLNNTIDKAGIVE 316

Query: 309 QLWEQVVSQHDSQCNPQQESWTSY 332
           ++ + ++   D      +      
Sbjct: 317 EISKLILLSLDKGIPEDEICVLVP 340


>gi|284920807|emb|CBG33870.1| helicase IV [Escherichia coli 042]
          Length = 684

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|260909505|ref|ZP_05916208.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636353|gb|EEX54340.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 900

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 103/302 (34%), Gaps = 36/302 (11%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               YE+ K++N ++DFEDL++ T D L       +      +    + +DEVQD + +Q
Sbjct: 229 FAKQYEDYKRENKLVDFEDLLLLTYDALVADVAGIY------RRYAWLQVDEVQDLNPLQ 282

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ +LT              T+  +GDE+Q+I+SF GA+   + + ++          
Sbjct: 283 LAIVDALTAK---------ENPTVMFLGDEQQAIFSFMGAKLDTLNQLRQR--------- 324

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
              ++  L ++ RS   +L V +        A+ +       +    +     G      
Sbjct: 325 CGTNVHHLSVNHRSPKYLLNVFNT------YAKAMLNIDERLLPEADNSDMGTGNELQVV 378

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI-SNMIGTDTIFSNGKKRVI 371
                     +  Q +      +  + ++  + A R A  +   +            + +
Sbjct: 379 SSNVLDTEYKDVAQLAGNLQTQNPNETTAIIVNANRDADDLSRALHAQGLSHFKVSGQDL 438

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
            A   + L+    +               K       R    +  A   + AL R  +  
Sbjct: 439 FASPEVKLLFAHLNILANAHNFIAWARLLK-----GLRVFEGNAAARNFVQALLRCAMLP 493

Query: 432 ED 433
            D
Sbjct: 494 TD 495



 Score = 45.3 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 33/137 (24%), Gaps = 34/137 (24%)

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                 Q     LQ  I EL                 + + T+H AKGLE   V + D  
Sbjct: 773 LVGDEAQALVQQLQAHIMELNTLKEADLCGSDFIAERIYVTTIHKAKGLEFDNVLIFDAV 832

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              + +                                        +    E  R  YV 
Sbjct: 833 DGRYPN----------------------------------FYTRTDERQTSEDARKFYVA 858

Query: 655 MTRASDQLIICKHSNTS 671
           MTRA  +L I       
Sbjct: 859 MTRAKRRLFISWALTRE 875


>gi|82776253|ref|YP_402602.1| DNA helicase IV [Shigella dysenteriae Sd197]
 gi|81240401|gb|ABB61111.1| DNA helicase IV [Shigella dysenteriae Sd197]
          Length = 684

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q++                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQRSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 46.5 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQRSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|297520068|ref|ZP_06938454.1| DNA helicase IV [Escherichia coli OP50]
          Length = 590

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 202 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 255

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 256 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 303

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 304 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 355

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 356 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 399

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 400 ERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 443



 Score = 45.3 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 205 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 264

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 265 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 324

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 325 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 384

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 385 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 444

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 445 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 501

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 502 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 545

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 546 ------AEERRLMYVALTRARHRVW 564


>gi|74311519|ref|YP_309938.1| DNA helicase IV [Shigella sonnei Ss046]
 gi|187731377|ref|YP_001880839.1| DNA helicase IV [Shigella boydii CDC 3083-94]
 gi|73854996|gb|AAZ87703.1| DNA helicase IV [Shigella sonnei Ss046]
 gi|187428369|gb|ACD07643.1| helicase IV [Shigella boydii CDC 3083-94]
 gi|320187172|gb|EFW61873.1| DNA helicase IV [Shigella flexneri CDC 796-83]
 gi|323165442|gb|EFZ51229.1| helicase IV [Shigella sonnei 53G]
 gi|323174930|gb|EFZ60545.1| helicase IV [Escherichia coli LT-68]
          Length = 684

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYRFNSRIGKVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 45.3 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I ++ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGERCDLDTTYRFNSRIGKVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|218704386|ref|YP_002411905.1| DNA helicase IV [Escherichia coli UMN026]
 gi|293404262|ref|ZP_06648256.1| helicase IV [Escherichia coli FVEC1412]
 gi|298380046|ref|ZP_06989651.1| helicase IV [Escherichia coli FVEC1302]
 gi|218431483|emb|CAR12361.1| DNA helicase IV [Escherichia coli UMN026]
 gi|291428848|gb|EFF01873.1| helicase IV [Escherichia coli FVEC1412]
 gi|298279744|gb|EFI21252.1| helicase IV [Escherichia coli FVEC1302]
          Length = 684

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|193070024|ref|ZP_03050971.1| helicase IV [Escherichia coli E110019]
 gi|209918215|ref|YP_002292299.1| DNA helicase IV [Escherichia coli SE11]
 gi|218553549|ref|YP_002386462.1| DNA helicase IV [Escherichia coli IAI1]
 gi|218694437|ref|YP_002402104.1| DNA helicase IV [Escherichia coli 55989]
 gi|192956621|gb|EDV87077.1| helicase IV [Escherichia coli E110019]
 gi|209911474|dbj|BAG76548.1| DNA helicase IV [Escherichia coli SE11]
 gi|218351169|emb|CAU96873.1| DNA helicase IV [Escherichia coli 55989]
 gi|218360317|emb|CAQ97867.1| DNA helicase IV [Escherichia coli IAI1]
 gi|324117174|gb|EGC11082.1| UvrD/REP helicase [Escherichia coli E1167]
          Length = 684

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 45.7 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|292487874|ref|YP_003530749.1| DNA helicase IV [Erwinia amylovora CFBP1430]
 gi|292899099|ref|YP_003538468.1| helicase IV [Erwinia amylovora ATCC 49946]
 gi|291198947|emb|CBJ46057.1| putative helicase IV [Erwinia amylovora ATCC 49946]
 gi|291553296|emb|CBA20341.1| DNA helicase IV [Erwinia amylovora CFBP1430]
          Length = 684

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 90/307 (29%), Gaps = 38/307 (12%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA---- 56
           ++ R G + +      +     +     +       L  +T     L      QQ     
Sbjct: 261 IRARLG-AEDLQARTFHALALHIIRQGSNKSPTISRLETDTDKRQSLLINAWRQQCDEKK 319

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK----KSQDEFIKIRD 112
           +Q     +  +    + L+     Q   + + +  +       ++              +
Sbjct: 320 AQANGWRQWLTDELKWDLSDGRFWQDERLARRLAVRLESWLGLMRMHGGAQAAMIETAPE 379

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                 + +     + L   L   ++ A K+   +DF  LI    +LL K         +
Sbjct: 380 EVRLLFIKR-----VKLMAPLIKAWKGALKEEGAVDFAGLIHQAVNLLDK--------GR 426

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QD S                     ++  +LFAVGD+ Q+IY F GA
Sbjct: 427 FISPWKHILVDEFQDISPQ--------RAALLAALRRQNTQTSLFAVGDDWQAIYRFSGA 478

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E                          L  ++R    I  V +K             +S 
Sbjct: 479 EMTLTTAFHHYFGA--------GDRCVLDTTYRFNQRIGEVANKFVQSNPFQLKKPLNSL 530

Query: 293 TTIRHRS 299
           +    ++
Sbjct: 531 SKGNKKA 537



 Score = 45.3 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 108/348 (31%), Gaps = 42/348 (12%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLK 397
              LARR+A  + + +G   +    +  +I+   +++ +L  KR     PLI      LK
Sbjct: 345 DERLARRLAVRLESWLGLMRMHGGAQAAMIETAPEEVRLLFIKRVKLMAPLIKAWKGALK 404

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL------------ 445
            +  +   G     +      + +      ++ +  D+S                     
Sbjct: 405 EEGAVDFAGLIHQAVNLLDKGRFISPWKHILVDEFQDISPQRAALLAALRRQNTQTSLFA 464

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCG-ISKFQHVIKYIHELIHIAQFCSPHDFF 504
                  I++         T + +     +   +       + I E+ +     +P    
Sbjct: 465 VGDDWQAIYRFSGAEMTLTTAFHHYFGAGDRCVLDTTYRFNQRIGEVANKFVQSNPFQLK 524

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +    KG ++ IS    E ++     LN      + +   L        +     K A
Sbjct: 525 KPLNSLSKGNKKAISLLPEEQLEP---LLNKISGYAKPTERILLLARYHHLRPDVLDKAA 581

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
               +  +  MT+H +KG ++  V ++                               P 
Sbjct: 582 TRWPNLHIDFMTIHASKGQQADYVVVLGLSEGK----------------------DGFPA 619

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
           +   + + + L+   +     E  RL YV MTRA  Q+ +    N  +
Sbjct: 620 AARESVMEAALLPVPEDFPHAEERRLAYVAMTRARQQVWLLYQRNAPS 667


>gi|313141801|ref|ZP_07803994.1| helicase [Helicobacter canadensis MIT 98-5491]
 gi|313130832|gb|EFR48449.1| helicase [Helicobacter canadensis MIT 98-5491]
          Length = 455

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/406 (12%), Positives = 122/406 (30%), Gaps = 67/406 (16%)

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           FL + L                LE+         S+  + +R+MT+H +KGLE   V ++
Sbjct: 112 FLEYALGFASVG--------ELLEKVESLQADIVSSECSGIRLMTIHKSKGLEFNHVLVI 163

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
           D       + ++        +             KS +      I   +   +++    L
Sbjct: 164 DDNKARSRYNNVFFEFKENGVEIQRVFQKSNDLRKSLDKTYQKAILKEEILKEKDLKNQL 223

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YV +TRA + + I   S           +                       + + +  +
Sbjct: 224 YVALTRAKNTMHIMLLSEKGRFDSLGLES-----------------------LQRGDLKS 260

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
                    N P + E    +    ++  + L +                         E
Sbjct: 261 ALEEIKDAINLPKKEERVFFEEASYKRSLEALGTQ----------------KKMQVIQKE 304

Query: 772 SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
                 Q    G+ +H +++             +   C K   L   +  +N++    ++
Sbjct: 305 VQEGKIQGIYYGVALHFVMEQKIKNNLDDLV-LLEILCNKMGFLMERESLENVIKHCKKI 363

Query: 832 LENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
           L+N      ++      E+     ++  ++  +     D + I +   F+ +YK+     
Sbjct: 364 LKNSHFIEILTKGKVKCEIPF---LSNGRQKRL-----DLLVIGENEAFVIDYKSG---- 411

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE-PKVFII 935
                   +++ Q+  Y + +++    K     + Y     ++  +
Sbjct: 412 ----MQRESYMTQVLEYMQSVEEIL-QKPTRGFVFYTEGEGRLVEV 452


>gi|237730918|ref|ZP_04561399.1| DNA helicase IV [Citrobacter sp. 30_2]
 gi|226906457|gb|EEH92375.1| DNA helicase IV [Citrobacter sp. 30_2]
          Length = 691

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 97/300 (32%), Gaps = 42/300 (14%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +   +  D        ++   +  S              + ++ +               
Sbjct: 299 TVSKLENDAIARNKLFITTWRQQCSEKKAQAKGWRQWLEEEMRWSVPEGNF------WDD 352

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L ++   + +     +        E +  + +E   +  +             + L  
Sbjct: 353 EKLQRRLASRLDRWVSLMRMHGGAQAEMIANAPEEIRDLFGKR------------IKLMA 400

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  
Sbjct: 401 PLLKAWKSALKDENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQ 452

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+       ++         
Sbjct: 453 RAALLAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFQQNF------- 497

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
             +     L +++R  + I  V ++      +      +S TT   ++  +     + L 
Sbjct: 498 -GEGDRCNLDMTYRFNSRIGEVANQFIQQNPHQLTKPLNSLTTGDKKAVTLLDESQLDLL 556



 Score = 44.9 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 25/182 (13%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                I E+ +     +PH     +     G ++ ++         LD  L+      + 
Sbjct: 510 RFNSRIGEVANQFIQQNPHQLTKPLNSLTTGDKKAVTLLDESQ---LDLLLDKLSGFVKA 566

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L        +     K A      ++  MT+H +KG ++  V ++           
Sbjct: 567 EERILVLARYHHLKPASLDKAATRWPKLQLDFMTIHASKGQQADYVIVMGLHEGN----- 621

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                         G P    +S     ++  +          E  RLLYV +TRA  ++
Sbjct: 622 -------------DGFPAPARESIMEEALLPAVEDFPDA----EERRLLYVALTRARHRV 664

Query: 663 II 664
            +
Sbjct: 665 WL 666


>gi|149909084|ref|ZP_01897742.1| hypothetical helicase IV [Moritella sp. PE36]
 gi|149807835|gb|EDM67780.1| hypothetical helicase IV [Moritella sp. PE36]
          Length = 730

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
             + N          +  + + L  HY+    ++  +DF+++II  +D ++         
Sbjct: 393 EQKLNALPDTDFAALTHEIVEILLTHYQHELDESNEIDFDEMIIKASDYVRN-------- 444

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            +      HIL+DE QD S  +  ++R L         T      LF VGD+ Q+IY F 
Sbjct: 445 GQFSSPWLHILVDEFQDISQARATLVRHL--------QTQHDDSKLFCVGDDWQAIYQFA 496

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           G++     R                S + L  +FR    I  V  K              
Sbjct: 497 GSDIAVTTRFSDYF--------GITSTLPLNTTFRFNDQISAVASKFVMANSEQMHKQIT 548

Query: 291 STTTIRH 297
           + T  + 
Sbjct: 549 THTKAKK 555



 Score = 41.8 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 26/105 (24%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDT--GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
           +++ MTVH++KG E+  V ++    G   F     +    +    +  G+P         
Sbjct: 634 DIKSMTVHSSKGQEADNVIVLAMEAGEHGFPCHKRRHPFSLILQPEPTGVPD-------- 685

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                            E  RL YV +TRA  Q+ +  + +  + 
Sbjct: 686 ----------------AEERRLFYVALTRARQQVYLLCNKDKPSA 714


>gi|27817688|emb|CAD61115.1| hypothetical protein [Cupriavidus oxalaticus]
          Length = 599

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 80/567 (14%), Positives = 149/567 (26%), Gaps = 128/567 (22%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   Y E   ++  +DFE ++     L+  R   + +  ++    + +LIDE QDT 
Sbjct: 161 LHAILGQYFEKLAESRQIDFELILYYAYQLIASRPAISALLGQL---FSFVLIDEYQDTK 217

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            IQ+ +I ++      G+    +    F VGD  Q+IY   G  P      K       T
Sbjct: 218 RIQYSIITAI---LKSGQGATKA----FIVGDPNQAIYQSLGGYPIAFEDFK-------T 263

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
            AG     +EL  ++RS+  I+              G      T I   S        V 
Sbjct: 264 MAGIDLKKLELSKNYRSSERIID-----------YFGNYNVHDTCIEAASEDKAYPSLV- 311

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                S+  ++ +    + L R I + I                
Sbjct: 312 ---------------------SFDATVNKTGLEAELIRLIRFNIE-------------TV 337

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I   ++ VL         +  +TR L              +            L +  L
Sbjct: 338 GIAPHEVCVLAP---QWTHLASMTRRLCASMPEYSFDGPGMVPFARDTENFWYRLSKIAL 394

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +Q     +V  L+      S+ +       +   +++                ++ K+  
Sbjct: 395 TQASPGMYVRRLRWASEILSDLEAAGASVSKLTRKSLLRECNAIKIDETDGLTYLSKFFD 454

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L            F  +           + F +     +D   +               
Sbjct: 455 RLFSSLAID--FRLFATLREHH-------AAFFDSSQARVDRLKSEGSEF---------- 495

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
                        +    +   + I T+H  KG E   V        +  H +       
Sbjct: 496 ------IGDIGTFKKVFQSRTGITISTIHGVKGAEFDAVIAYALLEDMVPHFNDPNG--- 546

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                                             QE   +LLYV  +RA   L +     
Sbjct: 547 ----------------------------------QESAMKLLYVIGSRARKNLHLISERG 572

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +    +      +       +++ 
Sbjct: 573 RVRQYSGEEYQVTRKLAACDFGYDQIP 599


>gi|70950300|ref|XP_744485.1| helicase  [Plasmodium chabaudi chabaudi]
 gi|56524458|emb|CAH80791.1| helicase, belonging to UvrD family, putative [Plasmodium chabaudi
           chabaudi]
          Length = 658

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 50/189 (26%)

Query: 131 KYLNAHYEEAKKKNCVL--DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           K    +Y++  +    +  DF+DL+I T  L+K       IR KI +E N++  DE QD 
Sbjct: 321 KKFYENYKKIFEAEKYIYYDFDDLLIETYKLMKDNI---PIRNKILEEWNYMFCDEFQDI 377

Query: 189 SLIQWEVIRSLT------------------------------------EDFFVGKNTHSS 212
           +  Q+ +++                                                + +
Sbjct: 378 NTTQFNILQFFANIQYDVKPTMDNEFGDDDMNIFVENDPSKFIKKRSKNSKLQNNKRNKT 437

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
             ++  +GD+ QSIY+F GA            +K            +L  +FRST +I+ 
Sbjct: 438 KTSITVIGDDDQSIYAFRGAHASV-------FKKIIKECNCLL--FKLSTNFRSTKEIVR 488

Query: 273 VVDKVFSIP 281
           + + +    
Sbjct: 489 ISNNLILNN 497


>gi|321223691|gb|EFX48754.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 348

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 53  IKLMAPLLKAWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQ 104

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+        +    
Sbjct: 105 DISPQRAALLEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF-- 154

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +     L  ++R  + I  + ++      +      +S T    ++
Sbjct: 155 ------GEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 201



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 150 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 209

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 210 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 266

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 267 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 304

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 305 EERRLLYVALTRARARVWL 323


>gi|213622020|ref|ZP_03374803.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-2068]
          Length = 513

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 125 LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 178

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 179 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 226

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 227 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 278

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 279 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 322

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 323 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 366



 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 315 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 374

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 375 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 431

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + +   +          
Sbjct: 432 DYVILVGLQEGN------------------DGFPAPARESIMESALFPQVEDFPDA---- 469

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 470 EERRLLYVALTRARARVWL 488


>gi|206577834|ref|YP_002239397.1| helicase IV [Klebsiella pneumoniae 342]
 gi|206566892|gb|ACI08668.1| helicase IV [Klebsiella pneumoniae 342]
          Length = 684

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 33/275 (12%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
           +S +    +        +  ++ Q  ++ +Q +           + L +    Q     +
Sbjct: 293 ISKLESDSAARQALLVKSWQQQCQ--EKKAQAKGWRLWLEEEMGWQLPEGDFWQD----K 346

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKKKN 144
           ++ ++     ++           +          +       + L   L   ++ A K  
Sbjct: 347 KVQRRMASRLDRWVSLMRMHGGSQAEMIAGAPEAVRDQFSKRVKLMSPLMKEWKAALKAE 406

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             +DF  LI    ++L K         +      HIL+DE QD S  +  ++ +L     
Sbjct: 407 NAVDFSGLIHQAVNILDK--------GRFVSPWKHILVDEFQDISPQRASLLAALRR--- 455

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                 +S  TLFAVGD+ Q+IY F GA+                    +     L  ++
Sbjct: 456 -----QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFNHYF--------GEGDSCALDTTY 502

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
           R    I  + +       +      +S T    ++
Sbjct: 503 RFNGRIGEIANGFIQQNPHQLSKPLNSVTAGDKKA 537



 Score = 39.1 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 22/91 (24%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MT+H +KG ++  V ++       +     +  IM                        
Sbjct: 591 FMTIHASKGQQADYVIVLGLQEGEDAFPAPARESIME----------------------Q 628

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            L+   +     E  RLLYV +TRA  ++ +
Sbjct: 629 ALLPQPEDFPDAEERRLLYVAITRARHRVWL 659


>gi|68637930|emb|CAI36135.1| ATP-dependent DNA helicase [Pseudomonas syringae pv. phaseolicola]
          Length = 598

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 76/573 (13%), Positives = 150/573 (26%), Gaps = 140/573 (24%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
               + +   Y +A +    +DFE ++     L++K    + +   I      +L+DE Q
Sbjct: 158 HEAIRGVLQAYWKALRAERHVDFELILFYAYQLIEKNPSISVLLGSI---FECVLLDEFQ 214

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT  IQ+ ++ S+ +    G +        F VGD  Q+IY   G               
Sbjct: 215 DTREIQYAILASILKASKGGASA-------FVVGDPNQAIYGSLGGYAITAADF------ 261

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
             T  G  F  +EL  ++RS++ I++     F                            
Sbjct: 262 -GTQCGIAFKEMELSDNYRSSSRIVSY----FGN-------------------------- 290

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS-ASILARRIAYTISNMIGTDTIFSN 365
               +  + S+ ++    +  +    FD      +    L R I + +  +         
Sbjct: 291 ----YNVLPSKIEAVGTGKDYASVVSFDHQTHRDALEEELVRLIKFNVETL--------- 337

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL--TDHLAIKDLMA 423
                I   ++ ++         +T                 D   +             
Sbjct: 338 ----GIAQHEVCIVAPWWVHLASMTRRLVAAL-----PAYSFDGPGMVPFARDVDNFWYK 388

Query: 424 LGRFI---LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           L R I    S +  +  +      + + S   +      R     V   I      G+  
Sbjct: 389 LARIILTEASPQLYVRRMRWAGEVIADLSVAGVEVQGLDRKTLLRVCNSITVTETDGLVF 448

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
            +     +   +      +            +  Q+ I +   E  + + E         
Sbjct: 449 LRVFFDQVCSTLG-VDRHTYAALQEHHDAFFECSQKRIDKLIKEGAEAIAEL-------- 499

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                               + R   A    + + T+H  KG E   V        +  H
Sbjct: 500 -------------------EMFRKVFAGRTGITVSTIHGVKGAEYDAVIAYGLLEGMVPH 540

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                                       E   +L+YV  +RA  
Sbjct: 541 FSDPN-------------------------------------QAETAKKLMYVVSSRARK 563

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            L +      S     + +    +   +F  D+
Sbjct: 564 NLHLISERARSRGWSGDYQPTDVLAGCAFGYDQ 596


>gi|309786700|ref|ZP_07681320.1| helicase IV [Shigella dysenteriae 1617]
 gi|308925393|gb|EFP70880.1| helicase IV [Shigella dysenteriae 1617]
          Length = 684

 Score = 96.1 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 103/331 (31%), Gaps = 43/331 (12%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q++                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQRSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-LWEQV 314
              +L  ++R    I  V ++             +S T    ++  +     +  L +++
Sbjct: 494 DRCDLDTTYRFNNRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKL 553

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                 +      +   +      E +A+  
Sbjct: 554 SGYAKPEERILILARYHHMRPASLEKAATRW 584



 Score = 46.8 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQRSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNNRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|307311651|ref|ZP_07591291.1| UvrD/REP helicase [Escherichia coli W]
 gi|306908206|gb|EFN38705.1| UvrD/REP helicase [Escherichia coli W]
 gi|315060247|gb|ADT74574.1| DNA helicase IV [Escherichia coli W]
 gi|323379193|gb|ADX51461.1| UvrD/REP helicase [Escherichia coli KO11]
          Length = 684

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 45.3 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|312171996|emb|CBX80253.1| DNA helicase IV [Erwinia amylovora ATCC BAA-2158]
          Length = 684

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 86/306 (28%), Gaps = 36/306 (11%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           ++ R G + +      +     +     +       L  +T     L      QQ  + +
Sbjct: 261 IRARLG-AEDLQARTFHALALHIICQGSNKSPTISRLETDTDKRQSLLINAWRQQCDEKK 319

Query: 61  CIEERFSLLSSFFLTQKF-------TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
                +    +  L             +         +    L      +Q   I+    
Sbjct: 320 AQANGWRQWLTDELKWDLSDGRFWQDERLARRLAGRLESWLGLMRMHGGAQAAMIETAPE 379

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                  K     + L   L   ++ A K+   +DF  LI    +LL K         + 
Sbjct: 380 EVRLLFTKR----VKLMAPLMKAWKGALKEEGAVDFAGLIHQAVNLLDK--------GRF 427

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
                HIL+DE QD S                     ++  +LFAVGD+ Q+IY F GAE
Sbjct: 428 ISPWKHILVDEFQDISPQ--------RAALLAALRRQNTQTSLFAVGDDWQAIYRFSGAE 479

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                                     L  ++R    I  V +K             +S +
Sbjct: 480 MTLTTAFHHYFGA--------GGRCVLDTTYRFNQRIGEVANKFVQSNPFQLKKPLNSLS 531

Query: 294 TIRHRS 299
               ++
Sbjct: 532 KGNKKA 537



 Score = 46.1 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 107/348 (30%), Gaps = 42/348 (12%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLK 397
              LARR+A  + + +G   +    +  +I+   +++ +L  KR     PL+      LK
Sbjct: 345 DERLARRLAGRLESWLGLMRMHGGAQAAMIETAPEEVRLLFTKRVKLMAPLMKAWKGALK 404

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL------------ 445
            +  +   G     +      + +      ++ +  D+S                     
Sbjct: 405 EEGAVDFAGLIHQAVNLLDKGRFISPWKHILVDEFQDISPQRAALLAALRRQNTQTSLFA 464

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCG-ISKFQHVIKYIHELIHIAQFCSPHDFF 504
                  I++         T + +         +       + I E+ +     +P    
Sbjct: 465 VGDDWQAIYRFSGAEMTLTTAFHHYFGAGGRCVLDTTYRFNQRIGEVANKFVQSNPFQLK 524

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +    KG ++ IS    E ++     LN      + +   L        +     K A
Sbjct: 525 KPLNSLSKGNKKAISLLPEEQLEP---LLNKISGYAKPTERILLLARYHHLRPDVLDKAA 581

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
               +  +  MT+H +KG ++  V ++                               P 
Sbjct: 582 TRWPNLHIDFMTIHASKGQQADYVVVLGLSEGK----------------------DGFPA 619

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
           +   + + + L+   +     E  RL YV MTRA  Q+ +    N  +
Sbjct: 620 AARESVMEAALLPVPEDFPHAEERRLAYVAMTRARQQVWLLYQRNAPS 667


>gi|161486258|ref|NP_753024.2| DNA helicase IV [Escherichia coli CFT073]
          Length = 684

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 46.8 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|85703698|ref|ZP_01034802.1| UvrD/REP helicase family protein [Roseovarius sp. 217]
 gi|85672626|gb|EAQ27483.1| UvrD/REP helicase family protein [Roseovarius sp. 217]
          Length = 445

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 141/423 (33%), Gaps = 77/423 (18%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            +H+ +DE QDT+L Q+ +++ +            S   L AVGD KQ I +F GA  +R
Sbjct: 44  YSHVFLDEFQDTTLPQYALLKEIFG---------GSNAVLTAVGDNKQLIMTFAGATNER 94

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
             +                  + L  +FRS   I+ +V+ +    E              
Sbjct: 95  FRQFSIDFG---------AQDVALASNFRSNQRIVDIVNSMAKAIEPNS----------- 134

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                            +  +     +P   +          +     LA  I+  I N 
Sbjct: 135 -----------------ITVKCSKAADPIPIASDGVIHFSSDDEERKGLAEFISREIQN- 176

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                         + A D +VLVR++ D        R    +  +++    R +    +
Sbjct: 177 ------------GSLNANDFIVLVRQKADEHE-DNGLRAALEEKGLTLRNEARTVGESGI 223

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
           +I+DL +        E  + F+ +        +  D+ ++ +  H + + +   Q     
Sbjct: 224 SIQDLSSEPLA----EAVILFIQVATGDRRRRAYPDLIQLMSTSHGSMSEHSAEQFGLEQ 279

Query: 477 GISKFQHVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
            + K         +  + +  + +  +  T  LG  K R+          +D +   +  
Sbjct: 280 TLRKATKAFDEFVKSSNKSFSWEALVNLITSQLGEDKLRRLAQEYKNPARLDKVKAGIAA 339

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            L        + QEL+   +              ++VR+MTVH +KGLE+  +       
Sbjct: 340 FLDECSQGAKNWQELVDRYQ------------GVDQVRLMTVHKSKGLEAHTIIFFSLKD 387

Query: 596 QVF 598
             F
Sbjct: 388 SSF 390


>gi|313106395|ref|ZP_07792629.1| putative helicase [Pseudomonas aeruginosa 39016]
 gi|310879131|gb|EFQ37725.1| putative helicase [Pseudomonas aeruginosa 39016]
          Length = 646

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 107/340 (31%), Gaps = 35/340 (10%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                +       A ++   ++  ++ F+         L +R     +         H+L
Sbjct: 331 REKIFVEAMALFWARFQALLREEGLMTFD----AAFQQLGERMAGGALAETALAPFTHLL 386

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S      +++L            +  +L A+GD+ QSIY + G+ P+  +   
Sbjct: 387 IDEFQDVSPQIVLWLQALHRRLAT----QGTAPSLMAIGDDWQSIYGWRGSSPELFIDFD 442

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           R    R    G+K +++ L  ++RS   I+   +KV +     Q  +         R+ R
Sbjct: 443 RHFPSR--GRGRKSALLVLETNYRSVEPIIRDGEKVLAGVRFKQDKT--------CRAFR 492

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             Q G   +         +Q         +  +      S+   A  +    +  +    
Sbjct: 493 PIQPGDHGVKLVQRFDLRAQLPKLLAEIRAQCEHAAARESSERTAVLLLSRRNEPLQAIQ 552

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
              +   R +  K + +               R      ++++V +D      H     L
Sbjct: 553 AELD---RALPVKGMTIH--------------RAKGLQAEVAIVVDDCLPGEKHPLRNAL 595

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            A   F  +  D       L+      +      +   R 
Sbjct: 596 YAASGFFRNSYDQAMEDESLRLAYVAITRGVSRVLWYTRK 635


>gi|168233449|ref|ZP_02658507.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194469887|ref|ZP_03075871.1| helicase IV [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194456251|gb|EDX45090.1| helicase IV [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205332486|gb|EDZ19250.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 684

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 91/284 (32%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q A                 L 
Sbjct: 296 LESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQWAVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|313898399|ref|ZP_07831936.1| UvrD/REP helicase [Clostridium sp. HGF2]
 gi|312956781|gb|EFR38412.1| UvrD/REP helicase [Clostridium sp. HGF2]
          Length = 677

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/577 (12%), Positives = 154/577 (26%), Gaps = 124/577 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                Y++ K +  + D +D++     +L        +         ++ ID+ Q+ S +
Sbjct: 173 AFLKAYDKFKNERNIYDQDDILCECARILMSTPA---VLQTFSSRYQYVHIDDAQELSFV 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
              +I+ L           SS   +  + D  Q +     A P+ +        +     
Sbjct: 230 AHVIIKLLF----------SSNCQMMMLADCDQCLDFDKAAYPQALDSFSEAYAQ----- 274

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I +L  ++R+   I  + ++ +   E A   S + T  ++ ++    +       
Sbjct: 275 ---ARIEQLEGNWRNNQTINALANEFYYKNETAMSCSSEETCEVKFKAFAQLERMYEYAM 331

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             VV                 F       +  ++   + + +   +         +  V 
Sbjct: 332 RMVVEDESD----------IAFLYRDGAMAMPLVELFMQHQVPFHLHGSVKKFLQEPVVK 381

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              +I+ L+   KD      +   L  D    V                   L       
Sbjct: 382 DLCNIIELLIDPKDMRAFYEVYEKLGFDISKKV-------------------LLEVAQRL 422

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
            DD                           E   VY+ + + +     K + +   +  +
Sbjct: 423 RDD---------------------------EHVDVYQAMMESSYRAAGK-KKLAASMENI 454

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
              A     H     IL     R + +          L        R      S   + +
Sbjct: 455 RT-ASTLETHTMIPFILDKLGYRARLLKANILMNDSNLLALRVIAARY-----SDPAQFL 508

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           + L +    +    S     ++I +V +A+G+E   V L+D     F             
Sbjct: 509 NRLREMGEFLCEPIS----RIQIRSVASARGMEFSRVALLDCLGSTFP------------ 552

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                      L++   +   RL + G+TRA  QL         
Sbjct: 553 ------------------------KAGLQEEELQLERRLFFTGITRAKHQLEFFTSKRCD 588

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
             +       Y++        +   +  +       E
Sbjct: 589 VTRLEISPFIYELHAPKEEEAKVAGERPVAQPKKLRE 625


>gi|330885758|gb|EGH19907.1| UvrD/REP helicase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 557

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/484 (13%), Positives = 129/484 (26%), Gaps = 95/484 (19%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  +    +DFE ++     L++     + +   I      +L+DE Q
Sbjct: 158 HEAIGGVLQAYWKELRAERQVDFELILFYAYQLIENYPSISMLLGSI---FECVLLDEFQ 214

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT  IQ+ ++ S+ +    G +        F VGD  Q+IY   G               
Sbjct: 215 DTREIQYAILASILKASKDGTSA-------FVVGDPNQAIYGSLGGYAITAADF------ 261

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
             T  G  F  +EL  ++RS++ I++     F                            
Sbjct: 262 -GTQCGIAFKEMELSDNYRSSSRIVSY----FGN-------------------------- 290

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS-ASILARRIAYTISNMIGTDTIFSN 365
               +  + S+ +S    +  +    FD      +    L R I + +  +         
Sbjct: 291 ----YNVLPSKIESVGKDKDYASVVSFDHQTHRDALEEELVRLIKFNVETL--------- 337

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL--TDHLAIKDLMA 423
                I   ++ ++         +T                 D   +             
Sbjct: 338 ----GIAQHEVCIVAPWWVHLASMTRRLVAAL-----PAYSFDGPGMVPFARDVDNFWYK 388

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           L R IL++     +V  ++      ++     +     + +T+                 
Sbjct: 389 LARIILTEASPQLYVRRMRWAGEVIADLRDAGVEVPSLDRKTLLRACNAITITITITITE 448

Query: 484 V--IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              + ++                   +                    L E  +      Q
Sbjct: 449 TDGLAFLRTFFDQLCSTFG-------IDRHTY-------------AALQEHHDAFFECSQ 488

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                L +  +E       + R   A+   V + T+H  KG E   V        +  H 
Sbjct: 489 KRIDKLIKEGAE-AIAELGMFRKVFADRTGVTVSTIHGVKGAEYDAVIAYGLLEGIVPHF 547

Query: 602 HIKK 605
               
Sbjct: 548 SDPN 551


>gi|331682467|ref|ZP_08383086.1| helicase IV (75 kDa helicase) [Escherichia coli H299]
 gi|331080098|gb|EGI51277.1| helicase IV (75 kDa helicase) [Escherichia coli H299]
          Length = 684

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 92/278 (33%), Gaps = 31/278 (11%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
           P+     +D      L +        +K    +   Q    E ++S+    F   +   +
Sbjct: 291 PIVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQR 350

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           +         +   L      +Q E I            K     + L   L   ++ A 
Sbjct: 351 R---LASRLDRWVSLMRMHGGAQAEMIASAPEVIRDLFSKR----IKLMAPLLKAWKGAL 403

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K    +DF  LI     +L+K         +      HIL+DE QD S  +  ++ +L +
Sbjct: 404 KAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAALLAALRK 455

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +S  TLFAVGD+ Q+IY F GA+                    +    +L 
Sbjct: 456 --------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEGDRCDLD 499

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            ++R  + I  V ++             +S T    ++
Sbjct: 500 TTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 108/385 (28%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF----LKNDYKISVVGNDRFI 411
            +    +    +  +I +   ++     K   L+  L +     LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEVIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V                               P +   + +   L+  
Sbjct: 596 ASKGQQADYVIIVGLQEGS----------------------DGFPAAARESIMEEALLPS 633

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
           ++     E  RL+YV +TRA  ++ 
Sbjct: 634 VEDFPDAEERRLMYVALTRARHRVW 658


>gi|288936247|ref|YP_003440306.1| UvrD/REP helicase [Klebsiella variicola At-22]
 gi|288890956|gb|ADC59274.1| UvrD/REP helicase [Klebsiella variicola At-22]
          Length = 684

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 33/275 (12%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
           +S +    +        +  ++ Q  ++ +Q +           + L +    Q     +
Sbjct: 293 ISKLESDSAARQALLVKSWQQQCQ--EKKAQAKGWRLWLEEEMGWQLPEGDFWQD----K 346

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKKKN 144
           ++ ++     ++           +          +       + L   L   ++ A K  
Sbjct: 347 KVQRRMASRLDRWVSLMRMHGGSQAEMIAGAPEAVRDQFSKRVKLMSPLMKEWKAALKAE 406

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             +DF  LI    ++L K         +      HIL+DE QD S  +  ++ +L     
Sbjct: 407 NAVDFSGLIHQAVNILDK--------GRFVSPWKHILVDEFQDISPQRASLLAALRR--- 455

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                 +S  TLFAVGD+ Q+IY F GA+                    +     L  ++
Sbjct: 456 -----QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFNHYF--------GEGDSCALDTTY 502

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
           R    I  + +       +      +S T    ++
Sbjct: 503 RFNGRIGEIANGFIQQNPHQLSKPLNSLTAGDKKA 537



 Score = 38.7 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 22/91 (24%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MT+H +KG ++  V ++       +     +  IM                        
Sbjct: 591 FMTIHASKGQQADYVIVLGLQEGEDAFPAPARESIME----------------------Q 628

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            L+   +     E  RLLYV +TRA  ++ +
Sbjct: 629 ALLPQPEDFPDAEERRLLYVAITRARHRVWL 659


>gi|109897059|ref|YP_660314.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c]
 gi|109699340|gb|ABG39260.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c]
          Length = 929

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 23/148 (15%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           A+ +   Y++ K+K+ + DF+D++      + KR        K+     H+++DE+QD++
Sbjct: 636 ARTVYVAYKKLKEKHSLWDFDDVLTF----MNKRMKVPKFSNKVSDGCEHLILDEMQDSN 691

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L+QW+++  L+           +   LF VGD  QSI+ F GA P          +  A 
Sbjct: 692 LVQWQILEKLSA----------AGIKLFCVGDTAQSIFGFRGARPA-------RFENYAE 734

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKV 277
           N   +        S+RST+ IL + + V
Sbjct: 735 N--TEVKRFTSRHSYRSTSRILRLTNFV 760


>gi|282858205|ref|ZP_06267396.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
           [Pyramidobacter piscolens W5455]
 gi|282583957|gb|EFB89334.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA)
           [Pyramidobacter piscolens W5455]
          Length = 558

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 97/284 (34%), Gaps = 29/284 (10%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR--DRFNTYKMFKSTL 124
                 F+       KN   +  +  +  +  KL   + +   +R  +R       +  L
Sbjct: 294 EADCREFVFDAADTVKNARGKLADALAGAMGVKLADWRRDAEALRAFERLLADGWSEEEL 353

Query: 125 ASLTLAKYL----NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
               L   L       ++  K     + F D+I      L++ +             + +
Sbjct: 354 KLRALLIRLGWLCWRKWQAYKASRGGITFADMIALAAQALERDES-------YAARFSEV 406

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DE QDT+  Q         D  +     ++   LF VGD KQSIY F  AEP      
Sbjct: 407 LVDEFQDTNDQQ---------DALLRVVRRAARARLFVVGDLKQSIYRFRRAEPAI---- 453

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                +  + A +    + L +SFRS   +L  V+  F      +  +E +      RS 
Sbjct: 454 ---FGRYVSAARRGGRYVSLSVSFRSGEKVLDAVNDRFEKIWKERLGAELNQPYEALRSP 510

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
           R  +     + E+  ++        +E          + ++A+ 
Sbjct: 511 RGLERAAAWIDERQRTELPVCERLLEEFQRDEEGKARESAAAAR 554


>gi|307127255|ref|YP_003879286.1| UvrD/REP helicase family protein [Streptococcus pneumoniae 670-6B]
 gi|295980931|emb|CBJ57179.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae]
 gi|306484317|gb|ADM91186.1| UvrD/REP helicase family protein [Streptococcus pneumoniae 670-6B]
          Length = 605

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 74/517 (14%), Positives = 151/517 (29%), Gaps = 124/517 (23%)

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           D + +IR  +    + + +DE QDT+  Q++++++             S   L AVGD+K
Sbjct: 194 DTNEYIRKALQMTYDFVFLDEFQDTTYAQYDLLKTCFL---------GSSCKLTAVGDDK 244

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+I  + GA+P       R             +  +L ++ RS   ++            
Sbjct: 245 QAIMRWAGAKPDIFPDYIRDF---------NPNEYQLLMNHRSVPKLVEF---------- 285

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                                    ++ + + S H S        +     +L +  + S
Sbjct: 286 -----------------------QKEVHQILNSNHSSIQTNNYPEFQEGEITLFEFENES 322

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
           + A+ IA  I   I             I+  +I +L +++            + N   I 
Sbjct: 323 LEAKLIANDIELKIQGG----------IRPSEICILAKQKVGIYSFE--LISILNSKGIK 370

Query: 404 VVGN-DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                +   +        L+ L      + D L +  +          D++         
Sbjct: 371 ARIENEYQDILKDPTCNLLLDLISCSQGKRDPLIWENISNFYGNINGIDELTDELILAKS 430

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +   +        +   +    +             D     +  K+    F +  G
Sbjct: 431 YKEIDNIVSDITYLISNFIPNEESMLK----------LIDCIIEKIDEKRIISNFSTYNG 480

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              +D++ +  +  L  E +           L+              N + IMT+H +KG
Sbjct: 481 KSDLDIIVKNFSKLLYIEYSQTQG-----EWLDTVS------SFKGENSIPIMTIHKSKG 529

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE  VV+ +      F   +                                        
Sbjct: 530 LEYEVVYFLGLEDSAFWSFNN--------------------------------------- 550

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
             EE     +V ++RA   LI       +N  ++N+ 
Sbjct: 551 QPEEDKSAFFVALSRAKSHLIFTYCKLRNNSPQNNRN 587


>gi|283784782|ref|YP_003364647.1| helicase IV [Citrobacter rodentium ICC168]
 gi|282948236|emb|CBG87803.1| helicase IV [Citrobacter rodentium ICC168]
          Length = 684

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 89/288 (30%), Gaps = 42/288 (14%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +   +  D        +S   +  S              + +Q                 
Sbjct: 292 TVSKLENDSAARHKLFISAWRQQCSEKKAHAKGWRQWLEEEMQWTVAEGNF------WDD 345

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L ++  P+ +     +        E +  + +    +  +             + L  
Sbjct: 346 EKLQRRLAPRLDRWVSLMRMHGGAQAEMIAGAPEAIRDLFSKR------------IKLMA 393

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  
Sbjct: 394 PLLKAWKSALKAENAVDFSGLIHQAIVILEK--------GRFVSPWKHILVDEFQDISPQ 445

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+        +         
Sbjct: 446 RAALLAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF------- 490

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +L  ++R    I  V ++      +      +S T    ++
Sbjct: 491 -GDGDRCDLDTTYRFNNRIGEVANRFIQQNPHQLKKPLNSLTAGDKKA 537



 Score = 46.5 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 25/182 (13%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                I E+ +     +PH     +     G ++ ++         LD  L+      + 
Sbjct: 503 RFNNRIGEVANRFIQQNPHQLKKPLNSLTAGDKKAVTLLDETQ---LDALLDKLSGYAKA 559

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L        +     K A      ++  MT+H +KG ++  V +V           
Sbjct: 560 DERILVLARYHYLKPESLEKAATRWPKLQLDFMTIHASKGQQADYVIIVGLQEGN----- 614

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                         G P    +S     ++  +          E  RLLYV +TRA  ++
Sbjct: 615 -------------DGFPAPARESIMEEALLPPVEDFADA----EERRLLYVALTRARHRV 657

Query: 663 II 664
            +
Sbjct: 658 WL 659


>gi|153812829|ref|ZP_01965497.1| hypothetical protein RUMOBE_03236 [Ruminococcus obeum ATCC 29174]
 gi|149831041|gb|EDM86130.1| hypothetical protein RUMOBE_03236 [Ruminococcus obeum ATCC 29174]
          Length = 1109

 Score = 95.8 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 106/1001 (10%), Positives = 268/1001 (26%), Gaps = 191/1001 (19%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
           +     ++  +          L      +    +  +       +   L  +  + +   
Sbjct: 77  EVGGDTRKVLEETGKNMILQKLVQVSQKKLVYLKNQMKKPGYLDEVKSLISEFMQYEVRK 136

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            ++                L     L   + E    +    F    +   ++L+   ++ 
Sbjct: 137 EELDKMIQDASDKPLLQMKLKDVAVLYEAFREYLSDH----F----MTAEEVLE--VLAK 186

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE--DFFVGKNTHSSPRTLFAVGDEKQS 225
            I +    + + +++D     + +Q  VIR L +  +      T      L A G   + 
Sbjct: 187 EIPFSEKLKGSTVVLDGYTGFTPVQHTVIRELLQVCEHVTVTVTMDVREQLLAKGKPHEL 246

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            Y           +  R   +   +  +   +                 +  F+      
Sbjct: 247 FY--------MSHKMIRSLSEFTRDMKEPIWVK-------------AGAESRFAKAPALN 285

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            L ++      HR +   +   VQ+++    + + +                        
Sbjct: 286 FLEQNLFRY--HRGAYNEEQKEVQIFQAGNPEREMEET---------------------- 321

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
               A  IS ++              +   I V+     +      + R + +  +I   
Sbjct: 322 ----ARRISRLVRE---------HGYRYGQIAVIT---GNLEEYGSIARHVFDAAEIPFF 365

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------ 459
            +++  +  +  ++ L A     +      S    L+  + + S  ++  +         
Sbjct: 366 VDEKHSVLMNPFVEYLRAALEMTVQGFSYESVFRYLRCGMSDLSRREVDILENYVIALGI 425

Query: 460 ---RHETETVYEYIQKFANCGISKFQHVIKYI-HELIHIA------------QFCSPHDF 503
              R   ET     +      I     + ++   E+  +A                 +DF
Sbjct: 426 RGFRKWNETWVRIYRGMDPAVIMDLNEIREHFTEEVRELAEGFSGKKKTVGEYSRYLYDF 485

Query: 504 F--TLILGAKKGRQQFISRFGNEVID--------VLDEFLNFTLRNEQNSYSSLQELISE 553
                I    K ++    + G+   +        ++ + L+  +        S +E    
Sbjct: 486 IVKRQIQEKLKVQELHFKQQGDRAREKEYAQIYGIIMDLLDKMVSILGEEVVSPEEFRQL 545

Query: 554 LEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           LE      K A      ++V I  +   +  +   +F V                +    
Sbjct: 546 LETGMTQAKVALIPPGIDQVLIGDMERTRLKDIRALFFVGVNEGCIPKNTESGGILTEMD 605

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
            D  G             +     + +           LY+ +T+ S+ L +    +   
Sbjct: 606 RDFLG--------NQGIELAPGPKELMNMQRFY-----LYLNLTKPSESLCLSYSRSNGK 652

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER------ 726
            +          +   F      +  K    ++  E             T  E+      
Sbjct: 653 GEAVGPAFLIRTIQTLFPEIHIERAEKPEKELDLLETPNTSVGYLLENLTDEEKRKENQL 712

Query: 727 ------------------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                             ++  +     + + +   S  K    E      + ++     
Sbjct: 713 FAELYSWYLNSPDYCTMTKKLTEAAFLRKPVDQISKSVAKALYGEISPNGATRLERFSAC 772

Query: 769 NL-----------ESLLSDNQTFNRGLIIHKLLQVIF-----------TLPEHKRKNFIT 806
                        E    + +  + G IIH+ L+               L + +R     
Sbjct: 773 AFAHFLKYGLELTERAEYEFRAMDMGNIIHQALEEFAVELRQKQLNWRELSDEERDTIAD 832

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS--EVSVSGKINCPKKDIII 864
           +   K A  +     ++   S             +    ++  E   +G+      ++ I
Sbjct: 833 NCLDKIAADYGNTILQS---SARNYYMIERTRRILRRTVWALQEQLKNGRFEPEGFEVAI 889

Query: 865 -SGRIDQ--ISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKILKDS--- 914
             GRID+  +   +  ++  I +YKT        + +   +  Q+ +  Y      +   
Sbjct: 890 GGGRIDRLDVMQEEDRVYVKIIDYKTG---NTSFDLVSIYYGLQMQLVVYMDAAMQAEQR 946

Query: 915 -YPNKSLV-CLLIY--VSEPKVFIIPQNKLNKAFAEISTKI 951
            +P+  +    + Y  V +P +    Q ++ +   E+  +I
Sbjct: 947 KHPDCQVRPAGIFYYNVKDPML----QKEMEEDLDELDPEI 983


>gi|307692435|ref|ZP_07634672.1| ATP-dependent helicase/deoxyribonuclease subunit B [Ruminococcaceae
           bacterium D16]
          Length = 1117

 Score = 95.8 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 59/690 (8%), Positives = 171/690 (24%), Gaps = 105/690 (15%)

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQ----AKDILVLVRKRKDTPLITFLTRFLKNDY 400
                A  I  ++  + +     +   +     + ++  V  R   P+       +    
Sbjct: 307 EVEWAASRIRTLVREEGLRYRDIEVTARDFGTYQPLIESVFPRYQVPVFASAMTDILEKP 366

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRF----ILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
            +++V      +       D+    +     +  ++ DL    +LK  L           
Sbjct: 367 ILTLVTAALETVAGGYRYDDVFRYLKTGLTDLPEEDRDLLENYVLKWNLRGSRWTQTKPW 426

Query: 457 -CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS---------------- 499
               R     + E  +          + V + +  L                        
Sbjct: 427 TMHPRGYGFPMMEEDKVLLERLDRARRQVAEPLELLRKNTNKTGEGQAIALYSFLENIGL 486

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-P 558
           P      +   ++  Q  ++    ++ +++   L    +    +   L+E  +       
Sbjct: 487 PERLEERVAALRQREQPALAEEYRQLWEIVCGGLEQCAQLLGETPMELEEFAALFRLVLS 546

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                    + + V         G    V+FL+                +          
Sbjct: 547 QYDVGTIPVSLDRVTAGETTRQTGQHGKVLFLLGADDASIPQVSTPAGLLSDDDRSLLAS 606

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                   +R+ +                   +Y+   R + +LI+     +   ++   
Sbjct: 607 YGLELNQTARDLLYR-------------EMTTVYLTCARPTQKLIVSWPGQSGAGEERRP 653

Query: 679 RTWYDMVYDSFHN------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
               + +   F +      ++   + +L   +   E      S H       E    +++
Sbjct: 654 CFLVERLRLLFSDLTVEREEDLYGRFRLQAPLPALEQAGRSQSAHDALLALPEYAPLVER 713

Query: 733 LMDEQKIPKKLFSPIKND--INEPYILNPSTIDTKGKTNL-----------ESLLSDNQT 779
           L    +  +   S    +        ++ S +D     +                +    
Sbjct: 714 LDRAARWERGRLSRPAVERLYGHRVPMSASRMDKYKSCHFSYFMRYGLQAEPRKPAGFTA 773

Query: 780 FNRGLIIHKLLQVI---FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL---- 832
              G  +H +L+ +       +     +      +          + +   +   L    
Sbjct: 774 PEYGTFVHYVLEHVLKDDAFQQTTLPGWEDEQDQERRDRVAELTRQAVKQYVREELGGLE 833

Query: 833 -ENPMMTTAMSCDSY------------------SEVSVSG---------KINCPKKDII- 863
            ++                                +S             +     D+  
Sbjct: 834 QQSERFQYLFRRLLRSVQAVVDNVTQEIWASKFRPISFELGFGSGKDLPPVELTVGDVTL 893

Query: 864 -ISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK---DSY 915
            I+G +D++        ++  + +YKT      ++  +      Q+ +Y   L+   + +
Sbjct: 894 SITGFVDRVDGWEKDGRLYLRVVDYKTGRKSF-DLTEVWNGLGLQMLLYLFTLEDRGEKF 952

Query: 916 PNKSLVCL--LIYVSEPKVFIIPQNKLNKA 943
             K +     L   +   +    ++  + A
Sbjct: 953 YGKPVKGAGVLYLPARDAIIKGSRSMSDDA 982


>gi|325109168|ref|YP_004270236.1| hypothetical protein Plabr_2614 [Planctomyces brasiliensis DSM 5305]
 gi|324969436|gb|ADY60214.1| hypothetical protein Plabr_2614 [Planctomyces brasiliensis DSM 5305]
          Length = 1129

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 110/1017 (10%), Positives = 258/1017 (25%), Gaps = 197/1017 (19%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            ++E   + +        S +N      +     + +++   LQ  ++             
Sbjct: 69   TFEQFAERVLRGAGQPASLLNPAERRMLVKSTISDVRRDGELQYFNRVAE---------- 118

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                          T+    +      +LK+ +       ++                  
Sbjct: 119  --------------TRGFGNQLGRFIAELKREEAWPDLWLNQLTDRPDSPKDREL----G 160

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L   Y++        D E         L      A+   ++      +++D   D +  
Sbjct: 161  LLYDRYQQRMLAWDKYDPEGRFWLARRELTNGRWDAFPELQL------VVVDGFSDFTTT 214

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            Q E++  L +                   D  +      G         KR   + A   
Sbjct: 215  QQEMLLLLADHAREVLLALPGETG----SDRPELFSRSGGTAAALRATAKRRQIETAVWN 270

Query: 252  GQKFSIIELPLSFRSTADILT-VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            GQK     L     S    L  +   +F      + +  +    +   ++   Q  T ++
Sbjct: 271  GQKQEQTVLA----SRPIGLQTLARNLFKNV--RRIIPAEVAEGVHCVAALGHQAETREV 324

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
               V          ++ S T                       + ++ +    +    ++
Sbjct: 325  ARAVKQLLLDGVPAEEISVTCRQ----------------PEEYAALVDSVFSDAGLPYQI 368

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
             +   +  L   R  + ++  +          S     + +    L+  D     +   +
Sbjct: 369  DRTLPVSSLPLARAFSAILGTI------QEDWSYATLKKLLRHTPLSWADWDNAAQRCRN 422

Query: 431  QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                L  + +    L             +        E     +       + + K   +
Sbjct: 423  VLHVLRLLNLQGGRLEILRTLQSLASRAEVERDAEENETFNDRSALYREAHETLAKLDEQ 482

Query: 491  LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-----------------IDVLDEFL 533
            L  +A+  S  +    +L    GR+ F      E                   D+L   L
Sbjct: 483  LRPLAKSGSYSEQVGRLLAI--GRELFTDNQSKEKTEQETPTSASGRSWESQWDLLAGML 540

Query: 534  NFTLRNEQNSYS------SLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
              +   +           S  +    LE Q+   +     A    V I+    A+ L+ P
Sbjct: 541  RESAEFQDRLSKPPGRRVSWADFTEWLEDQFQSQMLPPEKARAGHVLILNAEQARHLDVP 600

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
             +F++      F  +  +                   +  ++      +   ++ +  +E
Sbjct: 601  YLFVMGLQEGSFPSRQGQPPFYSEQER----------RQWNQTG----INLIVEGARYQE 646

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK---------- 696
               L Y  +TRA  QL +      S         +Y  V + F  +   +          
Sbjct: 647  EMLLFYRLVTRAQRQLTLTYSRVNSTGGPLYASPFYQAVRELFTAESLGEQQVGSLSPVP 706

Query: 697  -----------KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                       +++    +   +     W    P+ +P          M+  +     F+
Sbjct: 707  EQNELLTASDCRLRSVVEMGGKDAALLSWWASQPDLSPSFHSLRAAARMNSHRFETPGFT 766

Query: 746  PIKNDINE-------------PYILNPSTIDTKGKTNLESLLSDNQT------------- 779
              +  +                Y  + S ++          L                  
Sbjct: 767  AYEGLLEAGDNRRWLQQRFPADYTFSASRLEGYASCPYRFHLDHILGLDPVQSPRLATDH 826

Query: 780  FNRGLIIHKLLQVIFTLPEH--KRKNFITSY----CTKNAKLWPAKEYKNLLLSITRLLE 833
              RG ++H LL  ++   +     +     +         +     E +  L  + + L 
Sbjct: 827  RRRGNVVHDLLAGLYDSADDSSTAEGLADRFQQMVVEAFERTLSRSELRQALDEVEQQLL 886

Query: 834  NPMMTTAMSCDS------------------YSEVSVSGK--------------INCPKKD 861
                       +                  Y E++   +                  +  
Sbjct: 887  TEW-ADLYDAQAESYYDQYAADWVSPPRPQYRELTFGREDATSEQNESFPPVAFGDGEDV 945

Query: 862  IIISGRIDQISISQ--QNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            +++ GRID+I + +  +     + +YKT      + E +      QL++Y   +   
Sbjct: 946  VLVEGRIDRIDVGELAEGPVFNLIDYKTGEPPRMKAEQLSRGTQLQLALYAVAITRL 1002


>gi|238911102|ref|ZP_04654939.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 684

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLR 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|325002914|ref|ZP_08124026.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1]
          Length = 301

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 64/259 (24%), Gaps = 16/259 (6%)

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
            ++L      +       +   PE    + +  + +    ++ P     P +  ++    
Sbjct: 54  ALELPEPGPAEPAPDVPDAEGDPEGWAADVDVLLAERAAAKERPTVAL-PGRLSVSRLIE 112

Query: 757 LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
           L         +      L  N    RG   H  L+        +  +        +  + 
Sbjct: 113 LADDPDALAVRLRRPVPLPPNPHARRGTAFHAWLEQ--RFGAERLLDIDELPGAADESVT 170

Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-Q 875
              +   L         +              V V          + + GR+D +     
Sbjct: 171 SESDAAELAELQAAFEASEW-------ADRKPVDVEVSFETVLAGVAVRGRMDAVFADPD 223

Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVF 933
               + ++KT      E EH       QL+ Y          P + +     YV +    
Sbjct: 224 GGWTVVDWKTGGPAAPEREHAV---AVQLAAYRLAWAALQEIPAERVRAAFHYVRDGVTL 280

Query: 934 IIPQNKLNKAFAEISTKIP 952
                        +   +P
Sbjct: 281 RPADLLDADGLRALVAGVP 299


>gi|269798727|ref|YP_003312627.1| ATP-dependent nuclease subunit B-like protein [Veillonella parvula
           DSM 2008]
 gi|269095356|gb|ACZ25347.1| ATP-dependent nuclease subunit B-like protein [Veillonella parvula
           DSM 2008]
          Length = 1185

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 78/694 (11%), Positives = 188/694 (27%), Gaps = 150/694 (21%)

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
               ++ +    +         + +D+ +++R   ++         +   Y I    + +
Sbjct: 310 REREADAVARGILAYVESSEEARYRDVCIMLR---ESETYGDTLEKVFTRYGIPHFIDRQ 366

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
             + +H   + L AL   +       S   +LK+ L   + + + ++     E    +  
Sbjct: 367 RPMKNHPLGELLTALFDIVRHNYSRDSMFLLLKTDLMPLTREAVDELENYVLEFGIDHYK 426

Query: 470 IQKFANCGISKF----------------------QHVIKYIHELIHIAQFCS-------- 499
            ++ +   +  F                      Q ++  +      A +          
Sbjct: 427 WERESWPYLRGFYEGQDEESHLDAPRRARVNKARQTIMDVLSPWFDFAAYSDGHTGAEWG 486

Query: 500 ------------PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
                       P   +  +  A+    Q       ++ + +  F++      ++   +L
Sbjct: 487 AQLYGLLETLQVPERLYEWVKDAETVGDQESKASHEQMYNAVLSFIDEISMVMKDEILTL 546

Query: 548 QELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            E++  LE+    +  +      + V I T+        P VF++     VF        
Sbjct: 547 DEMMLLLEEGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVFPQSM---- 602

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                        I   + +   N    L +        E   LLY+ MTRASD L +  
Sbjct: 603 --------GDEGLIKDKERQELANAGITLAEGALPKAFNENF-LLYLAMTRASDSLTLSY 653

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
             +  +            +    + D+    +++  SI  D    Y W      +   ER
Sbjct: 654 AGSGEDGTGLEPSLVVKRLESLGYVDQT---VEIPLSIAPDTEADYVWRPLQSLSLLSER 710

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYIL----------------------------- 757
              +    +   +   L++  +        L                             
Sbjct: 711 WGALFSGYEVNPLWWGLYNWARESETYRSRLAEVSRGIRDNNDVPVITQDLVNGLFLSKG 770

Query: 758 ----NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIF-------- 794
               + + ++   +                 +        G  +H  L+ +         
Sbjct: 771 YMSGSVTRLERYQQCPFKFYAQYGLKLEPRPVRSFGAPEIGTFLHANLERLGNYLLENNK 830

Query: 795 ---TLPEHKR----KNFITSYCTKN--AKLWPAKEYKNLLLSITRLL------------- 832
               L E ++    +        +N   +       K +   + R L             
Sbjct: 831 QWRDLDEEEQANLCRTVADEILQENQLGEETSDAYQKAIEQRVQRTLHVTVDRLVEWSKR 890

Query: 833 ---ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS--GRIDQISIS--QQNIF--IFEY 883
              +   +          +  +   +    +D  +   G+ID+I         +  + +Y
Sbjct: 891 SDFDTKYLEQDFGRQGGWD-PIRVPL---GEDRYLRLIGQIDRIDEYTRGGQTYGMVIDY 946

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           K+        + + Y    QL  Y  +L+ +Y  
Sbjct: 947 KSG-GAHVTAQDVYYGLKLQLMTYLLVLESAYGK 979


>gi|242240110|ref|YP_002988291.1| DNA helicase IV [Dickeya dadantii Ech703]
 gi|242132167|gb|ACS86469.1| UvrD/REP helicase [Dickeya dadantii Ech703]
          Length = 685

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 89/298 (29%), Gaps = 50/298 (16%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFL 74
            +  D      F +    +  +             +  ++                    
Sbjct: 295 RLETDAEARRSFLLQQWQQQCAEKKTQAKGWRQWLSDEMEWVLPEGDYWH---------- 344

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
                P  +       ++   L      +Q E +   D      + +     L L   L 
Sbjct: 345 ----DPVVSARMAGRLERWLGLMRMHGGTQSEMVAQADEEVRTAVQQR----LRLMAPLL 396

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             +++A K    +DF  LI    + L+K         +      HIL+DE QD S  + +
Sbjct: 397 KAWKKALKDEGAVDFSGLIHQAINYLEK--------GRFINPWKHILVDEFQDISPQRAQ 448

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++ +L           +S  +LFAVGD+ Q+IY F GAE       +             
Sbjct: 449 LLSALRR--------QNSGTSLFAVGDDWQAIYRFSGAELSLTTSFEHHF--------GI 492

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            +   L  ++R    I  + ++           S          S R G   +V L  
Sbjct: 493 GAQCVLDTTYRFNRRIGEIANQFIQQNPAQLKKS--------LNSLRDGDRRSVALLP 542



 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/375 (14%), Positives = 110/375 (29%), Gaps = 45/375 (12%)

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W Q +S       P+ + W            ++ +A R+   +  M       S    + 
Sbjct: 325 WRQWLSDEMEWVLPEGDYWHDPV-------VSARMAGRLERWLGLMRMHGGTQSEMVAQA 377

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            +     V  R R   PL+    + LK++  +   G     +      + +      ++ 
Sbjct: 378 DEEVRTAVQQRLRLMAPLLKAWKKALKDEGAVDFSGLIHQAINYLEKGRFINPWKHILVD 437

Query: 431 QEDDLSFVCM-LKSPLF-----------NFSEDDIFKICTQRHETETVYEYIQKF-ANCG 477
           +  D+S     L S L                  I++         T +E+     A C 
Sbjct: 438 EFQDISPQRAQLLSALRRQNSGTSLFAVGDDWQAIYRFSGAELSLTTSFEHHFGIGAQCV 497

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
           +       + I E+ +     +P      +   + G ++ ++   +E    L+  L+   
Sbjct: 498 LDTTYRFNRRIGEIANQFIQQNPAQLKKSLNSLRDGDRRSVALLPDEQ---LEALLDKMS 554

Query: 538 RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                    L        +     K      +  V  MT+H +KG ++  V +V      
Sbjct: 555 GYVTGQERILVLARYHHLRPDVLQKADTRWPNLNVDFMTIHASKGRQADYVIVVGLHEGS 614

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                  +  ++  +      P                          E  RLLYV +TR
Sbjct: 615 DGFPAPGRESLLEEILLPALEPFPD----------------------AEERRLLYVALTR 652

Query: 658 ASDQLIICKHSNTSN 672
           A  Q+ +       +
Sbjct: 653 ARHQVWLLYDREKPS 667


>gi|213580191|ref|ZP_03362017.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 441

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 53  LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 106

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 107 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 154

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 155 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 206

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 207 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 250

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 251 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 294



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 243 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 302

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 303 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 359

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + +   +          
Sbjct: 360 DYVILVGLQEGN------------------DGFPAPARESIMESALFPQVEDFPDA---- 397

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 398 EERRLLYVALTRARARVWL 416


>gi|194446484|ref|YP_002040278.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194405147|gb|ACF65369.1| helicase IV [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 684

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 92/284 (32%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +   ++  S              + +Q A                 L 
Sbjct: 296 LESDATARHQLFLHTWHQQCSEKKAQAKGWRQWLEEEMQWAVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|213160860|ref|ZP_03346570.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E00-7866]
          Length = 448

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 60  LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 113

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 114 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 161

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 162 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 213

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 214 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 257

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 258 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 301



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 250 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 309

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 310 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 366

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + +   +          
Sbjct: 367 DYVILVGLQEGN------------------DGFPAPARESIMESALFPQVEDFPDA---- 404

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 405 EERRLLYVALTRARARVWL 423


>gi|157155618|ref|YP_001462195.1| DNA helicase IV [Escherichia coli E24377A]
 gi|193066692|ref|ZP_03047722.1| helicase IV [Escherichia coli E22]
 gi|194430210|ref|ZP_03062709.1| helicase IV [Escherichia coli B171]
 gi|260843211|ref|YP_003220989.1| DNA helicase IV [Escherichia coli O103:H2 str. 12009]
 gi|293433259|ref|ZP_06661687.1| DNA helicase IV [Escherichia coli B088]
 gi|157077648|gb|ABV17356.1| helicase IV [Escherichia coli E24377A]
 gi|192925661|gb|EDV80325.1| helicase IV [Escherichia coli E22]
 gi|194411746|gb|EDX28069.1| helicase IV [Escherichia coli B171]
 gi|257758358|dbj|BAI29855.1| DNA helicase IV [Escherichia coli O103:H2 str. 12009]
 gi|291324078|gb|EFE63500.1| DNA helicase IV [Escherichia coli B088]
 gi|320200191|gb|EFW74779.1| DNA helicase IV [Escherichia coli EC4100B]
 gi|323159593|gb|EFZ45573.1| helicase IV [Escherichia coli E128010]
 gi|323185327|gb|EFZ70691.1| helicase IV [Escherichia coli 1357]
          Length = 684

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKA 537



 Score = 46.1 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|119026245|ref|YP_910090.1| putative helicase IV [Bifidobacterium adolescentis ATCC 15703]
 gi|118765829|dbj|BAF40008.1| putative helicase IV [Bifidobacterium adolescentis ATCC 15703]
          Length = 690

 Score = 95.4 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 22/199 (11%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +     K        L L + L   Y    +    +DF  +I +    ++        R
Sbjct: 316 LNERRGGKHIGRNREMLQLVEPLYNAYVGNFRATQGIDFPGMITDAIRCVR--------R 367

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   ++LIDE QD S  ++E+IR+L            S  TLF VGD+ QSIY F 
Sbjct: 368 GAYRHLYKYVLIDEYQDMSRPRYELIRAL---------REQSDFTLFCVGDDWQSIYRFA 418

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           G++   +L    I +           + ++  + R    ++          ++       
Sbjct: 419 GSDIHLILDFADIWRD-----WGPTRMFQITTTRRFRQSLIDASGAFVMQDKSLYAKQLR 473

Query: 291 STTTIRHRSSRIGQVGTVQ 309
           + +  +  S +     T +
Sbjct: 474 NPSDKKDYSLKALGGATQE 492



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 73/580 (12%), Positives = 147/580 (25%), Gaps = 109/580 (18%)

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ I   +   L       +       T  + GD  Q I +  G   +            
Sbjct: 158 TTTIIGYIAWLLATKRAAPEEILVLSFTKASAGDMSQRIMASTGKTIRACT--------- 208

Query: 248 ATNAGQKFSIIELPLSFRSTADILT--VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
             + G +        +      I+     + V     +           +  +       
Sbjct: 209 FHSLGLEICRAATIANR----PIIDGHASNAVVRDTFDRLLAQNIPYRLLAFKLMSKELF 264

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
           G                  ++E +    D          L    A TI   +  + I  +
Sbjct: 265 G------------KYGAAAKREDFQLPTDDYAFNQYRQSLVEN-AQTIIQHMRQNNIGID 311

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRF------LKNDYKISVVGNDRFILTDHLAIK 419
           G + + + +    + R R+   L+  L                  +  D        A +
Sbjct: 312 GMRELNERRGGKHIGRNREMLQLVEPLYNAYVGNFRATQGIDFPGMITDAIRCVRRGAYR 371

Query: 420 DLMALGRFILSQEDDLSFVCM-LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
            L      ++ +  D+S     L   L   S+  +F +          ++ I +FA   I
Sbjct: 372 HLYKY--VLIDEYQDMSRPRYELIRALREQSDFTLFCV-------GDDWQSIYRFAGSDI 422

Query: 479 SKFQHVIKYIHEL--IHIAQFCSPHDFFTLILGAKKGRQQ-------------------- 516
                      +     + Q  +   F   ++ A                          
Sbjct: 423 HLILDFADIWRDWGPTRMFQITTTRRFRQSLIDASGAFVMQDKSLYAKQLRNPSDKKDYS 482

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI----SELEQYPPTIKRAHSANHNEV 572
             +  G    +  D  +    +  + +   +        + L +           +   +
Sbjct: 483 LKALGGATQEERFDAIIEQLRKLPKTASVLMLGRYKSDLNLLSRNDRDGLFQIDEHTGGI 542

Query: 573 ----------RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                       MT H +KGL+   VFL+     +                         
Sbjct: 543 VFLEKPKMDIEFMTAHKSKGLQRDFVFLLCCSGGLKGF---------------------- 580

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
           P +     ++  L+  +++    E  RL YV MTR   +L          ++    R  Y
Sbjct: 581 PSAIPEEPLLGLLLPEVERMPHAEERRLFYVAMTRCKKKLFFVV------DQSRPSRFMY 634

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
           ++      N  R  K+      N  E +    +   P  T
Sbjct: 635 ELHDKICPNIFRGVKLP-PQCPNCGEALRLRHTGSDPSRT 673


>gi|225351572|ref|ZP_03742595.1| hypothetical protein BIFPSEUDO_03169 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157916|gb|EEG71199.1| hypothetical protein BIFPSEUDO_03169 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 580

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                L L + L   Y +  K N  +DF  +I++    +                  ++L
Sbjct: 217 RNREMLQLIEPLYHAYIQNFKTNNGIDFPGMIVDAISCVNN--------GSYRHPYKYVL 268

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S  ++E+IR+L               +LF VGD+ QSIY F G++   +L   
Sbjct: 269 IDEYQDMSRPRYELIRAL---------RLQHDFSLFCVGDDWQSIYRFAGSDIHLILDFD 319

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           RI +           + ++  + R    ++           N      ++  + +   S 
Sbjct: 320 RIWRA-----WGPTFMFQITTTRRFRQSLIDASGAFVMRDTNLYVKHLNN-PSDKKDYSL 373

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
               G  +     V     +  P+  S           +      +   ++I        
Sbjct: 374 KALGGHTEEERFNVIVEQLRKLPKTASVLLLGRYRSDINLMIRCDQEGLFSIDQ------ 427

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
             S G  R ++  D+ +       +  +     FL     
Sbjct: 428 --STGNIRFLEKPDMDIRFMTAHASKGLQRDFVFLLCCSG 465



 Score = 45.7 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 82/326 (25%), Gaps = 68/326 (20%)

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
            +    V  D +             L R +  Q D   F               I++   
Sbjct: 261 RHPYKYVLIDEYQDMSRPR----YELIRALRLQHDFSLFC-------VGDDWQSIYRFAG 309

Query: 459 QRHETE----TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                      ++          I+  +   + + +          + +   +      +
Sbjct: 310 SDIHLILDFDRIWRAWGPTFMFQITTTRRFRQSLIDASGAFVMRDTNLYVKHLNNPSDKK 369

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSY--SSLQELISELEQYPPTIKRAHS------ 566
              +   G    +   E  N  +   +     +S+  L          I+          
Sbjct: 370 DYSLKALGGHTEE---ERFNVIVEQLRKLPKTASVLLLGRYRSDINLMIRCDQEGLFSID 426

Query: 567 ---------ANHN-EVRIMTVHTAKGLESPVVFLVDTGSQV--FSHKHIKKMHIMPSLND 614
                       + ++R MT H +KGL+   VFL+     +  F     ++  +   L +
Sbjct: 427 QSTGNIRFLEKPDMDIRFMTAHASKGLQRDFVFLLCCSGGLKGFPSTIPEEPLLGLLLPE 486

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
               P                          E  RL YV MTR   +L          ++
Sbjct: 487 VERCPH------------------------AEERRLFYVAMTRCKKKLFFIV------DQ 516

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKL 700
               R  Y++      N  R  K+  
Sbjct: 517 TRPSRFMYELHSKICPNIFRGVKLPP 542


>gi|282880255|ref|ZP_06288971.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
 gi|281305850|gb|EFA97894.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1]
          Length = 905

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 101/307 (32%), Gaps = 70/307 (22%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y + K++N +LDFEDL++ T D L   D          +    I +DEVQD + +Q  +I
Sbjct: 238 YIQYKRENKLLDFEDLLMLTYDALNADDQLEL------KRYRWIQVDEVQDLNPLQLALI 291

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            S T   F          T+  +GDE+Q+I+SF GA+   +   K+           +  
Sbjct: 292 DSFTSKDF---------HTVMYLGDEQQAIFSFMGAKMSTLDALKQR---------CEGH 333

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           +  L ++ RS   +L V +                                + +   ++ 
Sbjct: 334 LHRLFVNHRSPGYLLQVFNTFAEK--------------------------MLDIDPALLP 367

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
             D       +          +   A      +A  +  +           +     +  
Sbjct: 368 TTDFDPPRLGDELQLMLSEQVESEYAD-----VADKVQRL-----------QVQYSQETT 411

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            V+V    D  L++           +         +     +K L+A    + ++   + 
Sbjct: 412 AVIVSSNADAELMSEAL----AQKNLPHFKVSGEDVFASSEVKLLLAHLNILCNEHQFIG 467

Query: 437 FVCMLKS 443
           +  +LK 
Sbjct: 468 WSRLLKG 474



 Score = 46.5 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 49/362 (13%), Positives = 96/362 (26%), Gaps = 59/362 (16%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +      Q     E    + + +         A    + ++  +         ++R  
Sbjct: 578 PLIEEIQHHQLYSPSEGLKMFLEYVGNSRLLGHNADYDYHILNFNLQRYLPDIQLEERCN 637

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D L L+R      L+    +  K  Y +SV+  +      HLA  D+ A    +   
Sbjct: 638 MYFDSLKLIR------LLEPNLKEYKLKYLLSVLHLEGQN--SHLADADVHATCSVVRHC 689

Query: 432 EDDLS-FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            +     +   +  + +        +  +R+     + +   +          +   I  
Sbjct: 690 YEKAKLHINSQREWIQHPRFQQRAAVFRKRYLEIYTHAHQLLYQRQHSEHLPVLASEIAY 749

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           L               +    K              D++DE          +    L   
Sbjct: 750 LYRTLCEQGLLQTIEKLPHVIKYLSA----------DMIDE------DAYPSLIEQLSVY 793

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           I+E+           ++    + + TVH AKGLE   V L D     + +   +      
Sbjct: 794 INEINTLKEADLCHGTSLDERIFVTTVHKAKGLEFDQVVLFDAVDGRYPNYFNRDNV--- 850

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                              E  R  YV MTRA  +L +    N 
Sbjct: 851 -------------------------------RLVAEDKRKFYVAMTRAKQRLYVSWSRNR 879

Query: 671 SN 672
           ++
Sbjct: 880 AD 881


>gi|16759956|ref|NP_455573.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29142272|ref|NP_805614.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213417511|ref|ZP_03350653.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
 gi|213851965|ref|ZP_03381497.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
 gi|289826785|ref|ZP_06545720.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25290789|pir||AF0627 helicase IV (75 kD helicase) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16502250|emb|CAD08201.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137902|gb|AAO69463.1| helicase IV [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 684

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + +   +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALFPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|308186304|ref|YP_003930435.1| DNA helicase IV [Pantoea vagans C9-1]
 gi|308056814|gb|ADO08986.1| putative DNA helicase IV [Pantoea vagans C9-1]
          Length = 684

 Score = 95.4 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K+   +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 389 IKLMAPLLKAWKSALKEEGAVDFSGLIHQAIAILEK--------GRFISPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +    LFAVGD+ Q+IY F GAE             
Sbjct: 441 DISPQRAALLSALRK--------QNKRTALFAVGDDWQAIYRFSGAEMTLTTAFHHYF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +     L  ++R    I  + ++             +S T    +S
Sbjct: 491 ------GEGDRCVLDTTYRFNDRIGDIANRFIQQNPQQLAKPLNSVTKGNKKS 537



 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 97/343 (28%), Gaps = 46/343 (13%)

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD------TPLITFLTR 394
               LA R+A  +   +    +  +G  +     D+   +R           PL+     
Sbjct: 344 EDERLANRLASRLERWL--GLMRMHGGAQAAMIADVPEEIRDHFSKRIKLMAPLLKAWKS 401

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM-LKSPLF------- 446
            LK +  +   G     +      + +      ++ +  D+S     L S L        
Sbjct: 402 ALKEEGAVDFSGLIHQAIAILEKGRFISPWKHILVDEFQDISPQRAALLSALRKQNKRTA 461

Query: 447 ----NFSEDDIFKICTQRHETETVYEYIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPH 501
                     I++         T + +   +   C +         I ++ +     +P 
Sbjct: 462 LFAVGDDWQAIYRFSGAEMTLTTAFHHYFGEGDRCVLDTTYRFNDRIGDIANRFIQQNPQ 521

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
                +    KG ++ IS       D L+  LN      +     L        +     
Sbjct: 522 QLAKPLNSVTKGNKKSISLL---AEDQLEALLNKLSGYAKPDERILLLARYHYLRPELLD 578

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           K         +  MT+H +KG ++  V LV                              
Sbjct: 579 KARTRWPKLNLEFMTIHASKGQQADYVILVGLQQGK----------------------EG 616

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            P     + I   L+   +     E  RL YV +TRA  Q+ +
Sbjct: 617 FPAEVRESIIEQGLLPQPEAFPDAEERRLAYVALTRARQQVFL 659


>gi|213647171|ref|ZP_03377224.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. J185]
          Length = 689

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 64/221 (28%), Gaps = 25/221 (11%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + +   +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALFPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           E  RLLYV +TRA  ++ +               +W     
Sbjct: 641 EERRLLYVALTRARARVWLLSIKIIPRALWRRLNSWMCRWR 681


>gi|259908878|ref|YP_002649234.1| DNA helicase IV [Erwinia pyrifoliae Ep1/96]
 gi|224964500|emb|CAX56010.1| Helicase IV [Erwinia pyrifoliae Ep1/96]
 gi|283478871|emb|CAY74787.1| DNA helicase IV [Erwinia pyrifoliae DSM 12163]
          Length = 684

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 91/306 (29%), Gaps = 36/306 (11%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           ++ R G   +      +     +     +       L       +  +++  +    Q  
Sbjct: 261 IRARLGTE-DLQARTFHALALHIIQQAGNKSPAISRLE----TDSDKRQSLLINVWRQQC 315

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKK-SPDLKEKLKKSQD--EFIKIRDRFNTY 117
             ++  +     +LT +     +  +   + + +  L  +L+          +       
Sbjct: 316 DEKKAQANGWRQWLTDELKWDVSDGSFWQDDRLARRLVGRLESWLGLMRMHGVAQAAMIE 375

Query: 118 KMFKSTLASLT----LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
              +      T    L   L   ++ A K+   +DF  LI    +LL K         + 
Sbjct: 376 TAPEEVRLLFTKRVKLMAPLMKAWKGALKEEGAVDFAGLIHQAVNLLDK--------GRF 427

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
                HIL+DE QD S                     ++  +LFAVGD+ Q+IY F GAE
Sbjct: 428 ISPWKHILVDEFQDISPQ--------RAALLAALRRQNTQTSLFAVGDDWQAIYRFSGAE 479

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                                     L  ++R    I  V +            + +S +
Sbjct: 480 MVLTTAFHHYFGA--------GDRCVLDTTYRFNQRIGEVANTFVQSNPFQLKKTLNSLS 531

Query: 294 TIRHRS 299
               ++
Sbjct: 532 KGNKKA 537



 Score = 44.5 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 25/190 (13%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
              + I E+ +     +P      +    KG ++ IS    E ++     LN        
Sbjct: 503 RFNQRIGEVANTFVQSNPFQLKKTLNSLSKGNKKAISLLPEEQLEP---LLNKISGYATP 559

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           +   L        +     K A    +  +  MT+H +KG ++  V ++           
Sbjct: 560 AERILLLARYHHLRPDVLDKAATRWPNLNIDFMTIHASKGQQADYVVVLGLSEGK----- 614

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                               P +   + + + L+   +     E  RL YV MTRA  Q+
Sbjct: 615 -----------------DGFPAAARESVMEAALLPVPEDFPHAEERRLAYVAMTRARQQV 657

Query: 663 IICKHSNTSN 672
            +    +  +
Sbjct: 658 WLLYDRDAPS 667


>gi|16764434|ref|NP_460049.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167994904|ref|ZP_02575994.1| helicase IV [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168243865|ref|ZP_02668797.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168467516|ref|ZP_02701353.1| helicase IV [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194451210|ref|YP_002045077.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|207856420|ref|YP_002243071.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|16419590|gb|AAL20008.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194409514|gb|ACF69733.1| helicase IV [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|195630104|gb|EDX48756.1| helicase IV [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|205327314|gb|EDZ14078.1| helicase IV [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205337241|gb|EDZ24005.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|206708223|emb|CAR32523.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261246292|emb|CBG24100.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992828|gb|ACY87713.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157619|emb|CBW17111.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912066|dbj|BAJ36040.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|323129343|gb|ADX16773.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 684

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|190574929|ref|YP_001972774.1| putative helicase IV [Stenotrophomonas maltophilia K279a]
 gi|190012851|emb|CAQ46480.1| putative helicase IV [Stenotrophomonas maltophilia K279a]
          Length = 919

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 78/257 (30%), Gaps = 36/257 (14%)

Query: 41  TGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKL 100
                +   A+ L ++           L             K +   ++           
Sbjct: 482 RSGHALQDLAERLGESGVELDPNPDREL--------PEQGAKPMPDADLIGLMRTFIAHA 533

Query: 101 KKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           K +      + +R       +  +     L +A  +   ++ A      +DFED++    
Sbjct: 534 KSNCLTLDDMAERLRQMPEDQFEERHRRFLEIASPVFQAWDNALADEHGIDFEDMLNMAA 593

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            LL+        +   +     ++ DE QD S  +  + R+L              R LF
Sbjct: 594 GLLE--------QGHYESPYELVMADEFQDASRARARLCRALVSR---------PGRYLF 636

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           AVGD+ QSI  F GA+   +   +               +++L  +FR    +     + 
Sbjct: 637 AVGDDWQSINRFAGADVSVMTGFRE--------WMGHGQVLKLEQTFRCPQALCDASSRF 688

Query: 278 FSIPENAQGLSEDSTTT 294
            S        +  S   
Sbjct: 689 VSRNPAQIAKAVRSAAP 705



 Score = 44.9 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 42/409 (10%), Positives = 110/409 (26%), Gaps = 56/409 (13%)

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS   +  + +++    E+   L  +    +  + ++      +    +    H      
Sbjct: 482 RSGHALQDLAERL---GESGVELDPNPDRELPEQGAKPMPDADLIGLMRTFIAHAKSNCL 538

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV------ 378
             +        +P++       R +   I++ +      +   +  I  +D+L       
Sbjct: 539 TLDDMAERLRQMPEDQFEERHRRFL--EIASPVFQAWDNALADEHGIDFEDMLNMAAGLL 596

Query: 379 ---LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
                    +  +        +   ++      R          D  ++ RF        
Sbjct: 597 EQGHYESPYELVMADEFQDASRARARLCRALVSRPGRYLFAVGDDWQSINRFA------G 650

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           + V ++           + K+       + + +   +F +   ++    ++       + 
Sbjct: 651 ADVSVMTGFREWMGHGQVLKLEQTFRCPQALCDASSRFVSRNPAQIAKAVR--SAAPAMG 708

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                             RQ               + L+  +   +    ++  L     
Sbjct: 709 PVLQAFQMNRREELQDGVRQYLAKLH--------QQLLSGAVPQGRKGRVTVFILGRYRA 760

Query: 556 --QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                P+  +    +  +V  +TVH +KG E+  V L    ++ F         +  ++ 
Sbjct: 761 DRSAMPSDWKTVFGSTMDVEFLTVHRSKGREADYVILPGMVNRSFPSLRSDDPVLSLAMP 820

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
           +    P                          E  RL YV +TRA   +
Sbjct: 821 EGDTYP------------------------LSEERRLFYVALTRARRSV 845


>gi|256018779|ref|ZP_05432644.1| DNA helicase IV [Shigella sp. D9]
 gi|300824148|ref|ZP_07104267.1| UvrD/REP helicase [Escherichia coli MS 119-7]
 gi|331667345|ref|ZP_08368210.1| helicase IV (75 kDa helicase) [Escherichia coli TA271]
 gi|300523324|gb|EFK44393.1| UvrD/REP helicase [Escherichia coli MS 119-7]
 gi|331065701|gb|EGI37594.1| helicase IV (75 kDa helicase) [Escherichia coli TA271]
          Length = 684

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKA 537



 Score = 46.1 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|256005815|ref|ZP_05430766.1| ATP-dependent nuclease subunit B [Clostridium thermocellum DSM
           2360]
 gi|255990216|gb|EEU00347.1| ATP-dependent nuclease subunit B [Clostridium thermocellum DSM
           2360]
 gi|316941648|gb|ADU75682.1| ATP-dependent nuclease subunit B [Clostridium thermocellum DSM
           1313]
          Length = 1146

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 65/684 (9%), Positives = 185/684 (27%), Gaps = 142/684 (20%)

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                 A  I  +            R ++ ++I V+     +      L   + ++Y I 
Sbjct: 317 AEVEACARDIVRLCRD---------RGMRYREIAVVT---GNLDGYEKLIEAVFSEYGIP 364

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---QR 460
              + +  + +H  ++ +M++    +      +    LK+ L     + I ++       
Sbjct: 365 CFIDRKVDIVNHPLVRLIMSMLDIFIENWSYEAVFRYLKTGLTGIDRESIDRLENYVLAC 424

Query: 461 HETETVYEYIQKFAN-----CGISKFQHVIKYIHE------------------------- 490
               + +   +++             +   + + +                         
Sbjct: 425 GIRGSCWTETEEWKMVPELIPNEKSLEEAKELLEDVNRIRAQVVAPLMEFRKKTKGRKKA 484

Query: 491 ------LIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNS 543
                 L          +     +   +      ++   ++V + + E  + T+    + 
Sbjct: 485 SDFCASLYDFLCTLGIPEKIEDAIEKFRESGNLNLANEYSQVWNAVMEVFDHTVEVMGDE 544

Query: 544 YSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              +++    LE      K        ++V + ++  ++  E   ++++     VF    
Sbjct: 545 TFGIEKFARILEIGFGECKIGLIPASLDQVLVGSLERSRSHEIKALYILGANDGVFPPAV 604

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
           +++  +                S +R                     L+Y  +T A + L
Sbjct: 605 MEEGILSDQDRAVLNNAGIELASDTRTQAFDGQY-------------LIYRALTTAGNYL 651

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD-------------EW 709
            I         +          +   F N      I  + S+ ++               
Sbjct: 652 RISWSIADHEGRTLRPSLVVFRLRKLFLNITETSNILPSGSLEEEMELLSGNSPAFKSMV 711

Query: 710 IAYEWSTHHPENTPLEREE--TIKQLMDEQKIPKKLFSP--------------IKNDINE 753
            A        E  P+ +E         + +   + L +               I     E
Sbjct: 712 SALRQKADGKEIKPVWQEAYRWFAVQDEWRGKCEALRAAFQYKNLAQPVSREKIAALYGE 771

Query: 754 PYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK-- 800
           P + + S ++                  E  +   +  + G  +H +++    +   +  
Sbjct: 772 PAVSSVSRLEKYTACPFAFYVQYGLGAKERQIYSLRPPDVGTFMHAVIEKFSRMVAKRNI 831

Query: 801 -RKNFITSYCTKNAKLWPAKEYKNLLL---SITRLLENPMMT---------TAMSCDSYS 847
             ++    +C++       +  + +     + +R      +            ++     
Sbjct: 832 SWRDLDRDWCSEKVSEIVDEMLEKMQGSGIAASRRYTALTLRLKRVVARAVWLIAEHIRR 891

Query: 848 ----EVSVSGKIN------------CPKKDIIISGRIDQI--SISQQNIF--IFEYKTHH 887
                V+                     + I ++GRID++    ++   +  I +YK+  
Sbjct: 892 SSFEPVAYEVGFGENGKYPPIVIELDSGEKIHLTGRIDRVDALKTEDGTYLRIVDYKSGG 951

Query: 888 HVPQEIEHIPYTHIAQLSIYEKIL 911
              + +  + Y    QL  Y   L
Sbjct: 952 KDFK-LSDVFYGLQIQLITYLDAL 974


>gi|311280136|ref|YP_003942367.1| UvrD/REP helicase [Enterobacter cloacae SCF1]
 gi|308749331|gb|ADO49083.1| UvrD/REP helicase [Enterobacter cloacae SCF1]
          Length = 684

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 102/309 (33%), Gaps = 42/309 (13%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYF------QVSDINKYVSLSMETGNPTILKKAQTLQ 54
           ++ R       S +  +     +          +S +    +        +  ++ Q  +
Sbjct: 261 IRERLNTDAI-SAQTFHALALHIIRQGSKKVPTISRLENDTAARQTLLIKSWQQQCQ--E 317

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK----KSQDEFIKI 110
           + +Q +   +       + + +    +   + + +  +       ++       +     
Sbjct: 318 KKAQAKGWRQWLEEEMGWQVPEGDYWRNETLQKRLAGRLDRWVGLMRMHGGSQAEMIAAA 377

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            D      + +     + L   L   ++ A K    +DF  LI    ++L+K        
Sbjct: 378 PDE-----VRERFGKRVKLMAPLLKAWKTALKDENAVDFSGLIHQAVNVLEK-------- 424

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            +      HIL+DE QD S  +  ++ +L +         +S  TLFAVGD+ Q+IY F 
Sbjct: 425 GRFVSPWKHILVDEFQDISPQRAALLAALRQ--------QNSQTTLFAVGDDWQAIYRFS 476

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+                    +  +  L  ++R    I  + ++      +      +
Sbjct: 477 GAQLSLTTAFNHYF--------GEGDLCALDTTYRFNGRIGEIANRFIQQNPHQLNKPLN 528

Query: 291 STTTIRHRS 299
           S T    ++
Sbjct: 529 SLTAGDKKA 537



 Score = 45.7 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 25/190 (13%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                I E+ +     +PH     +     G ++ ++   +     LD  L+      + 
Sbjct: 503 RFNGRIGEIANRFIQQNPHQLNKPLNSLTAGDKKAVTLLTDNQ---LDALLDKLSGYARP 559

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           +   L        +     K A    H  +  MT+H +KG ++  V ++       +   
Sbjct: 560 NERILILARYHHLKPAALEKAATRWPHLLIDFMTIHASKGQQADYVIVLGLQQGQDAFPA 619

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
             +  IM                         L+   +     E  RLLYV +TRA  ++
Sbjct: 620 PARESIME----------------------QALLPQEEDFPDAEERRLLYVALTRARQRV 657

Query: 663 IICKHSNTSN 672
            +  +    +
Sbjct: 658 WLLYNKEEPS 667


>gi|293409341|ref|ZP_06652917.1| helD [Escherichia coli B354]
 gi|291469809|gb|EFF12293.1| helD [Escherichia coli B354]
          Length = 684

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 389 IKLMAPLLKAWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+             
Sbjct: 441 DISPQRAALLAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +    +L  ++R  + I  V ++             +S T    ++
Sbjct: 491 ------GEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWCKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDES---HLDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|317010636|gb|ADU84383.1| hypothetical protein HPSA_01810 [Helicobacter pylori SouthAfrica7]
          Length = 778

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 55/494 (11%), Positives = 145/494 (29%), Gaps = 86/494 (17%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
           +++K + +L +     S        L  +      +    ++    L E  +  +     
Sbjct: 314 NLVKILEDLENNDGNLSASAL----LDLENLTLSLLEEQSSKEQASLKETHSQIMHQYHL 369

Query: 543 SYSSLQE------LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              +L+       L   L+++    +    ++  ++R+M     +G++   + + D    
Sbjct: 370 LEDTLKNYSFKDLLHLYLQEFEANFRLD-DSSGGKIRVMDTLETRGMQFDKIVIADFNES 428

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
              +     + +  +L     +P  + +   + +    L K+ K+               
Sbjct: 429 CVPNLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKE--------------- 473

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
                 ++  +  +   K SN     D+      +   +          +++  A     
Sbjct: 474 ------MVLSYIESETSKASNMLLELDLNLKPIKDAYTLFATSPLKDYQEEDIKA----- 522

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                 P     +   L       ++ +               S+ D    T        
Sbjct: 523 ----AIPKGFGFSASSLNTFLACKRRFYYHY------IKRFRESSKDESNST-------- 564

Query: 777 NQTFNRGLIIHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLL 832
                 G ++H+LL             K  +     K     P +    L+    I    
Sbjct: 565 -----VGSLLHELLKEAYEKNKSPDLLKERLIQLLEKKENTTPKERLDTLIAIEKIQAFY 619

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKT------ 885
           +        +  + + + +        + ++  GRID+I   +   I + +YK       
Sbjct: 620 KKE--QQRFNEKT-TILDLEKSFETTIEGVLFKGRIDRIDKSTDNEIILLDYKFKSELQL 676

Query: 886 --------HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
                    +  P EI  I   +  Q++IY   LK+    + +      + + ++    +
Sbjct: 677 DNMSKKQRGNLSPTEIAQISTDY--QMAIYAYALKNLGYKEPIKAFFYDLRKGELV--GE 732

Query: 938 NKLNKAFAEISTKI 951
           ++L+     +   +
Sbjct: 733 DELDLKMDYLVRSL 746


>gi|295696392|ref|YP_003589630.1| UvrD/REP helicase [Bacillus tusciae DSM 2912]
 gi|295411994|gb|ADG06486.1| UvrD/REP helicase [Bacillus tusciae DSM 2912]
          Length = 470

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 85/234 (36%), Gaps = 45/234 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            ++  L   YE   ++    DF+D++I  ++LL ++                +L+DE QD
Sbjct: 167 QVSTRLREIYEGELRRYGAWDFDDILIQVHELLFEQGRMPP--------WKAVLVDEAQD 218

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + IQ  ++  L  D             LF +GD+ QSIY F GA P       R     
Sbjct: 219 LNEIQSILVEGLARDGL-----------LFMIGDDDQSIYGFRGAVPAYFQGHLRR---- 263

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                   ++  L ++ RS   ++   +++     +A+G S         R+ R G    
Sbjct: 264 -----PDTAVFYLSVNHRSHQGLVEPCNRLIVNNGDARGKSI--------RALRQGPGPE 310

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
           V+L+             +Q+ W +   +       + +  R    +   +    
Sbjct: 311 VRLFP---------DEWEQDRWLNRVLAREALQGMAAVLARTHQQLQRALSRGA 355



 Score = 42.6 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 29/139 (20%)

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                 Q   + L     +L++    + R    +      +T H +KG E   V+++D  
Sbjct: 328 LAREALQGMAAVLARTHQQLQRA---LSRGAEGHRYGAIWLTFHGSKGREFDHVYILDAV 384

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                H                                    + L+ S  EE  RL YV 
Sbjct: 385 EGSAPH--------------------------YPGAPGKKRDQELEASLVEEERRLFYVA 418

Query: 655 MTRASDQLIICKHSNTSNE 673
           MTRA ++L+I         
Sbjct: 419 MTRARERLVILVPERIEGR 437


>gi|168264164|ref|ZP_02686137.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205347347|gb|EDZ33978.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 684

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|213425898|ref|ZP_03358648.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. E02-1180]
          Length = 662

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + +   +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALFPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|329939098|ref|ZP_08288472.1| RecB family exonuclease [Streptomyces griseoaurantiacus M045]
 gi|329301983|gb|EGG45876.1| RecB family exonuclease [Streptomyces griseoaurantiacus M045]
          Length = 354

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 70/285 (24%), Gaps = 29/285 (10%)

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                       +       +   S                 +  +   P    +  +  
Sbjct: 8   EGGAAAPAGTEPAETTTRADSVAESAVPAAGATTPGTTPAPVIPAQAPAPAVAPAASRRA 67

Query: 751 INEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
              P  L+PS      +  L              +    RG ++H +L+ +F  P  +R 
Sbjct: 68  PARPTSLSPSRAGDFMQCPLLYRFRVIDRLPEKPSPAATRGTLVHAVLERLFDAPAAERT 127

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT-TAMSCDSYSEVSVSGKINCPKKD 861
                           K    L        +   +           E   + +     + 
Sbjct: 128 APRARSLVPGQWDRLLKNRPELAELFADDEDGSRLAGWLEEAGQLVERWFALEDPTRLEP 187

Query: 862 I--------------IISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           +               + G ID++ ++    + I +YKT      E    P   + Q+  
Sbjct: 188 VEREMFVQTRLESGLTLRGIIDRVDVAPTGEVRIVDYKTGKAPRPEYAEGP---LFQMKF 244

Query: 907 YEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           Y  ++            L+Y+    V       + +    +  K+
Sbjct: 245 YALVIWRLKKVVPRRLQLVYLGSGDVVTYDP--VIEDLQGVERKL 287


>gi|197261861|ref|ZP_03161935.1| helicase IV [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197240116|gb|EDY22736.1| helicase IV [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
          Length = 684

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|317047604|ref|YP_004115252.1| UvrD/REP helicase [Pantoea sp. At-9b]
 gi|316949221|gb|ADU68696.1| UvrD/REP helicase [Pantoea sp. At-9b]
          Length = 684

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 80/243 (32%), Gaps = 25/243 (10%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
           +Q     +       + + +    Q + + Q +  +       L +              
Sbjct: 320 AQASGWRQWLQEELEWEIAEGPFWQDDKLAQRLASRLERWLG-LMRMHGGAQAAMIADVP 378

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
            +  +     + L   +   ++ A K    +DF  LI     +L+K         +    
Sbjct: 379 EEQREQFSKRIKLMAPILKAWKSALKAEGAVDFSGLIHQAIAILEK--------GRFISP 430

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             HIL+DE QD S  +  ++ +L +         +   +LFAVGD+ Q+IY F GAE   
Sbjct: 431 WKHILVDEFQDISPQRAALLTALRQ--------QNKRTSLFAVGDDWQAIYRFSGAEMSL 482

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                            +     L  ++R    I  + ++      +      +S T   
Sbjct: 483 TTAFHHYF--------GEGDRCVLDTTYRFNDRIGEIANRFVQQNPHQLRKPLNSLTKGN 534

Query: 297 HRS 299
            +S
Sbjct: 535 KKS 537



 Score = 44.1 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 49/379 (12%), Positives = 111/379 (29%), Gaps = 49/379 (12%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS---ASILARRIAYTISNMIGTDTIFS 364
           ++ W +  +   +Q +  ++      +    E        LA+R+A  +   +    +  
Sbjct: 308 IESWREQCNSKKAQASGWRQWLQEELEWEIAEGPFWQDDKLAQRLASRLERWL--GLMRM 365

Query: 365 NGKKRVIQAKDILVLVRKRKD------TPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
           +G  +     D+    R++         P++      LK +  +   G     +      
Sbjct: 366 HGGAQAAMIADVPEEQREQFSKRIKLMAPILKAWKSALKAEGAVDFSGLIHQAIAILEKG 425

Query: 419 KDLMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETETVYE 468
           + +      ++ +  D+S               ++ LF   +D          E      
Sbjct: 426 RFISPWKHILVDEFQDISPQRAALLTALRQQNKRTSLFAVGDDWQAIYRFSGAEMSLTTA 485

Query: 469 YIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
           +   F                 I E+ +     +PH     +    KG ++ ++    E 
Sbjct: 486 FHHYFGEGDRCVLDTTYRFNDRIGEIANRFVQQNPHQLRKPLNSLTKGNKKSVTLLTQEQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           ++     L+      +     L        +     K        ++  MT+H +KG ++
Sbjct: 546 LEP---LLDKMSGYVKPDERVLLLARYHHLRPALLDKAKTRWPKLQLDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V L+                               P +   + +   L+   +     
Sbjct: 603 DFVILLGLHDGR----------------------DGFPAAARESIMEQGLLPQPEAFPDA 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RL YV +TRA  Q+ +
Sbjct: 641 EERRLAYVALTRARQQVWL 659


>gi|125974532|ref|YP_001038442.1| DNA helicase/exodeoxyribonuclease V, subunit B [Clostridium
           thermocellum ATCC 27405]
 gi|281419056|ref|ZP_06250073.1| ATP-dependent nuclease subunit B [Clostridium thermocellum JW20]
 gi|251764585|sp|A3DH20|ADDB_CLOTH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|125714757|gb|ABN53249.1| DNA helicase/exodeoxyribonuclease V, subunit B [Clostridium
           thermocellum ATCC 27405]
 gi|281407205|gb|EFB37466.1| ATP-dependent nuclease subunit B [Clostridium thermocellum JW20]
          Length = 1146

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 65/684 (9%), Positives = 185/684 (27%), Gaps = 142/684 (20%)

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                 A  I  +            R ++ ++I V+     +      L   + ++Y I 
Sbjct: 317 AEVEACARDIVRLCRD---------RGMRYREIAVVT---GNLDGYEKLIEAVFSEYGIP 364

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---QR 460
              + +  + +H  ++ +M++    +      +    LK+ L     + I ++       
Sbjct: 365 CFIDRKVDIVNHPLVRLIMSMLDIFIENWSYEAVFRYLKTGLTGIDRESIDRLENYVLAC 424

Query: 461 HETETVYEYIQKFAN-----CGISKFQHVIKYIHE------------------------- 490
               + +   +++             +   + + +                         
Sbjct: 425 GIRGSCWTETEEWKMVPELIPNEKSLEEAKELLEDVNRIRAQVVAPLMEFRKKTKGRKKA 484

Query: 491 ------LIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNS 543
                 L          +     +   +      ++   ++V + + E  + T+    + 
Sbjct: 485 SDFCASLYDFLCTLGIPEKIEDAIEKFRESGNLNLANEYSQVWNAVMEVFDHTVEVMGDE 544

Query: 544 YSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
              +++    LE      K        ++V + ++  ++  E   ++++     VF    
Sbjct: 545 TFGIEKFARILEIGFGECKIGLIPASLDQVLVGSLERSRSHEIKALYILGANDGVFPPAV 604

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
           +++  +                S +R                     L+Y  +T A + L
Sbjct: 605 MEEGILSDQDRAVLNNAGIELASDTRTQAFDGQY-------------LIYRALTTAGNYL 651

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD-------------EW 709
            I         +          +   F N      I  + S+ ++               
Sbjct: 652 RISWSIADHEGRTLRPSLVVFRLRKLFLNITETSNILPSGSLEEEMELLSGNSPAFKSMV 711

Query: 710 IAYEWSTHHPENTPLEREE--TIKQLMDEQKIPKKLFSP--------------IKNDINE 753
            A        E  P+ +E         + +   + L +               I     E
Sbjct: 712 SALRQKADGKEIKPVWQEAYRWFAVQDEWRGKCEALRAAFQYKNLAQPVSREKIAALYGE 771

Query: 754 PYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK-- 800
           P + + S ++                  E  +   +  + G  +H +++    +   +  
Sbjct: 772 PAVSSVSRLEKYTACPFAFYVQYGLGAKERQIYSLRPPDVGTFMHAVIEKFSRMVAKRNI 831

Query: 801 -RKNFITSYCTKNAKLWPAKEYKNLLL---SITRLLENPMMT---------TAMSCDSYS 847
             ++    +C++       +  + +     + +R      +            ++     
Sbjct: 832 SWRDLDRDWCSEKVSEIVDEMLEKMQGSGIAASRRYTALTLRLKRVVARAVWLIAEHIRR 891

Query: 848 ----EVSVSGKIN------------CPKKDIIISGRIDQI--SISQQNIF--IFEYKTHH 887
                V+                     + I ++GRID++    ++   +  I +YK+  
Sbjct: 892 SSFEPVAYEVGFGENGKYPPIVIELDSGEKIHLTGRIDRVDALKTEDGTYLRIVDYKSGG 951

Query: 888 HVPQEIEHIPYTHIAQLSIYEKIL 911
              + +  + Y    QL  Y   L
Sbjct: 952 KDFK-LSDVFYGLQIQLITYLDAL 974


>gi|313156950|gb|EFR56383.1| UvrD/REP helicase [Alistipes sp. HGB5]
          Length = 634

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 27/213 (12%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK---KNCVLDFED 151
           D    + +++       +    ++ +++    LT  K +   + + K    +     FED
Sbjct: 174 DFVIIIDRAKVSLSDYLNSD-AFRAYRADKDWLT-NKKVYESFMKTKNAFNEKGFFTFED 231

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +      LL +      I  ++      I+IDE QD S +Q E++  L            
Sbjct: 232 VENCCFKLLMQ---RKEIATRLATRFPLIIIDECQDLSPVQIELLSIL----------RE 278

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
           +   L  VGD  QSIY F  A P+ +L+  R               + L  ++RS   I+
Sbjct: 279 NGTRLILVGDINQSIYGFRQANPEYLLKYVRR---------NDIVKLSLTDNYRSNQSIV 329

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                +       +G  +               
Sbjct: 330 NCFSHIIPSNPPIKGKRQALFDRSVLVWEYDDD 362


>gi|238018400|ref|ZP_04598826.1| hypothetical protein VEIDISOL_00226 [Veillonella dispar ATCC 17748]
 gi|237864871|gb|EEP66161.1| hypothetical protein VEIDISOL_00226 [Veillonella dispar ATCC 17748]
          Length = 1158

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 81/702 (11%), Positives = 183/702 (26%), Gaps = 158/702 (22%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
               A  +A  I   + +            + +D+ +++R   ++         +   Y 
Sbjct: 310 REREADAVARRILAYVESSP--------EARYRDVCIMLR---ESETYGDTLEKVFTRYG 358

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I    + +  + +H   + L AL   +       S   +LK+ L   + + + ++     
Sbjct: 359 IPHFIDRQRPMKNHPLGELLTALFDIVRHSYSRDSMFLLLKTDLMPLTREAVDELENYVL 418

Query: 462 ETETVYEYIQKFANCGISKFQH----------------------VIKYIHELIHIAQFCS 499
           E    +   ++ +   +  F                        ++  +      A    
Sbjct: 419 EFGIDHYKWERESWPYLRGFHEGQDEESHLDAPRRARINQARQTIMDILSPWFDFAAHSE 478

Query: 500 PHDFFTLILGAKKGRQQFI--SRFGNEVIDV------------------LDEFLNFTLRN 539
            H             +      R      D                   +  F++     
Sbjct: 479 GHTGAEWGEQLYGLLEILQVPQRLYEWAKDAETVGDQESKASHEQMYNAVISFIDEISMV 538

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            ++   +L E++  LE+    +  +      + V I T+        P VF++     VF
Sbjct: 539 MKDEVLTLDEMMLLLEEGLSDVNYSMIPPSLDHVVITTIERGYSQWWPKVFVMGLNQGVF 598

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                I   + +   +    L +        E   LLY+ MTRA
Sbjct: 599 PQSM------------GDEGLIKDKERQELADAGITLAEGALPKAFNENF-LLYLAMTRA 645

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
           SD L +   S+  +            +    +  +    + +  SI  D    Y W    
Sbjct: 646 SDSLTLSYASSGEDGTGLEPSLVVKRLESLGYVGKA---VDIPLSIEPDTEADYVWRPLQ 702

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--------------------- 757
             +   ER   +    +   +   L++  +        L                     
Sbjct: 703 SLSLLSERWGALFSGHEVNPLWWGLYNWARESDTYRPRLAEVSRGIRDNNDVPVITKDLV 762

Query: 758 ------------NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIF 794
                       + + ++   +                 +        G  +H  L+ + 
Sbjct: 763 NGLFLSKGYMSGSVTRLERYQQCPFKFYAQYGLKLEPRRVRSFGAPEIGTFLHANLERLG 822

Query: 795 -----------TLPEHKRKNFITSYCT------KNAKLWPAKEYKNLLLSITRLL----- 832
                       L E +++N   S         +  +       K +   + R L     
Sbjct: 823 NYLLENNKQWRDLNEEEQQNLCRSVADEILQENQAGEETSDAYQKAIEQRVQRTLHVTVD 882

Query: 833 -----------ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS--GRIDQISIS--QQN 877
                      +   +          +  +   +    +D  +   G+ID+I        
Sbjct: 883 RLVEWSKRSDFDTKYLEQDFGRQGGWD-PIRVPL---GEDRYLRLIGQIDRIDEYTRDGQ 938

Query: 878 IF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
            +  + +YK+        + + Y    QL  Y   L+ +Y N
Sbjct: 939 TYGMVIDYKSG-GAHVTAQDVYYGLKLQLMTYLLALESAYGN 979


>gi|198241992|ref|YP_002215008.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197936508|gb|ACH73841.1| helicase IV [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326622761|gb|EGE29106.1| helicase IV [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 684

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|20090983|ref|NP_617058.1| DNA helicase [Methanosarcina acetivorans C2A]
 gi|19916069|gb|AAM05538.1| DNA helicase [Methanosarcina acetivorans C2A]
          Length = 612

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 26/153 (16%)

Query: 127 LTLAKYLNAHYEEAKK---KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
             L K L   Y + KK   +   +  ED++  +  +L +  +   +   +  +  +I +D
Sbjct: 176 YRLPKKLKKSYFDYKKLYWQEGRIHHEDVLYFSYRILCENPI---LLIFLSAKFPYIFLD 232

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QDT+ IQ  +++ L +          S  T+  +GD  QSIYSF GA+ +  L     
Sbjct: 233 EFQDTNPIQTMIVKMLAK----------SGSTIGVIGDPAQSIYSFQGAKREDFLDFYI- 281

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
                    Q  +  E+  + RST+ I+ +++ 
Sbjct: 282 ---------QDIAYYEIQDNRRSTSKIIRLLNH 305


>gi|191166604|ref|ZP_03028433.1| helicase IV [Escherichia coli B7A]
 gi|260854254|ref|YP_003228145.1| DNA helicase IV [Escherichia coli O26:H11 str. 11368]
 gi|260867133|ref|YP_003233535.1| DNA helicase IV [Escherichia coli O111:H- str. 11128]
 gi|190903409|gb|EDV63129.1| helicase IV [Escherichia coli B7A]
 gi|257752903|dbj|BAI24405.1| DNA helicase IV [Escherichia coli O26:H11 str. 11368]
 gi|257763489|dbj|BAI34984.1| DNA helicase IV [Escherichia coli O111:H- str. 11128]
 gi|323175411|gb|EFZ61006.1| helicase IV [Escherichia coli 1180]
          Length = 684

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 DRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKA 537



 Score = 45.7 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 105/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S      L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|104781136|ref|YP_607634.1| ATP-dependent DNA helicase, RecQ-like [Pseudomonas entomophila L48]
 gi|95110123|emb|CAK14830.1| putative ATP-dependent DNA helicase, RecQ-like [Pseudomonas
            entomophila L48]
          Length = 1735

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 75/240 (31%), Gaps = 38/240 (15%)

Query: 169  IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
            +R  + +   HIL+DE QD   +Q+ ++ +L +     +        +  VGD+ Q+IY+
Sbjct: 1238 LRALLLRGYRHILVDEYQDIDELQYRLVSALADRGSSEEG----RPCIIGVGDDDQNIYA 1293

Query: 229  FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
            +     K +         R+T          L  ++RS+  I++  +++           
Sbjct: 1294 WRATNNKYIEEFLTDYGARST---------YLVENYRSSGCIISAANQLIGFNAQR---- 1340

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
               +  I   + R+G     + WE        Q                     +  A+ 
Sbjct: 1341 LKQSQPITIDARRMGDAPGGE-WEGRDPLRRGQVLRLAID-------RSDREVGNCQAQA 1392

Query: 349  IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
                +  ++  D     G           VL R       +    +    ++ I      
Sbjct: 1393 AMLELERLLALDEEGWEGC---------AVLSRTHHYLWPV----QAWCEEHDIPYHLAS 1439



 Score = 38.4 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 57/398 (14%), Positives = 107/398 (26%), Gaps = 79/398 (19%)

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF--ILTDH 415
              + +     +R+ Q++ I +  R+  D P   +  R      ++  +  DR    + + 
Sbjct: 1329 AANQLIGFNAQRLKQSQPITIDARRMGDAPGGEWEGRDPLRRGQVLRLAIDRSDREVGNC 1388

Query: 416  LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
             A   ++ L R +   E+      +L                          +       
Sbjct: 1389 QAQAAMLELERLLALDEEGWEGCAVLSRTHHYL-WPVQAWCEEHDIPYHLASDKDSGLPL 1447

Query: 476  CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK------GRQQFISRFGNEV---I 526
                 F  V+  +  L               +L            +Q     G +     
Sbjct: 1448 ARQRAFVAVVGLLGNLDLSLTAAQALARARAVLDETSSPFFETAFEQLEVDLGEDALQCE 1507

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
             ++D    +     Q +   L                          + TVH+AKGLE  
Sbjct: 1508 QIVDWLYEYAREMRQQTGKGLY-------------------------LGTVHSAKGLEFR 1542

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
             V L+D G                                             +  T ++
Sbjct: 1543 HVVLLDGGWNT------------------------------------------RAKTLDD 1560

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              RL YVGMTRA   L +C+ +  +        +    V+   H     K+ +  +  + 
Sbjct: 1561 ERRLYYVGMTRAEQTLTLCEFTADNPFSGCLAPSTRRAVFSGQHQPSLDKRYQQLSLKDI 1620

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            D       S  H  +  L +  +  +L  E    + L 
Sbjct: 1621 DIDHPGRKSESHEIHAALRKLRSGMRLRFEADGERYLL 1658


>gi|56413928|ref|YP_151003.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362851|ref|YP_002142488.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56128185|gb|AAV77691.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094328|emb|CAR59840.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 684

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|327480564|gb|AEA83874.1| helicase [Pseudomonas stutzeri DSM 4166]
          Length = 665

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/454 (11%), Positives = 127/454 (27%), Gaps = 39/454 (8%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  +  +    +    P  Q   + K          P   ++   L           +  
Sbjct: 239 AAGDEPDNPLANARLRPAQQR--LLKQAYQRCYAEQPDFREQVHRLLDLPGPAVEPAKGR 296

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             +     + F+         + +        ++       +++         +     +
Sbjct: 297 RAAPKAPEKPFSLAGEFAALPLYEAFHVQAGFIESIGLRIDRLQPSQLECTSRER--RFI 354

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                 +  ++   ++  +  F         L ++ + +  +         H+LIDE QD
Sbjct: 355 EALITFHGCFQAVLREQGLQTFN---AAFQQLGERLNAADSVPPASLAPFQHLLIDEFQD 411

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            S    + +++L            S  +L A+GD+ QSIY + G+ P+  +   R   +R
Sbjct: 412 ISPQIVQWLQALHRQL----ARQGSSPSLMAIGDDWQSIYGWRGSSPELFMEFDRHFPRR 467

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +    + L  ++RS   ++   + V +     Q  +         R +R  Q G 
Sbjct: 468 GA---KGSETLLLETNYRSIEPVIRDGEAVLAGVRFKQAKTS--------RPNRPMQPGD 516

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             +      + +           +    + +  S    A  +    ++ +       +  
Sbjct: 517 HGVRLVTGFELNGGLAQLVAEIKAQCAHVVERGSRERTAVLLLGRRNDTLRAIQAELDRT 576

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             V                     + R      ++++V +D      H     L A   F
Sbjct: 577 LPVKAY-----------------TIHRAKGLQAEVAIVVDDCLPPQAHPLRNALYAYCGF 619

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             +  D       L+      +      +   R 
Sbjct: 620 FRNSYDQAMADESLRLAYVAITRGVSRVLWYTRK 653


>gi|295109448|emb|CBL23401.1| ATP-dependent nuclease subunit B [Ruminococcus obeum A2-162]
          Length = 1112

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 70/710 (9%), Positives = 187/710 (26%), Gaps = 142/710 (20%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
               +  A  I  ++              +   I V+     +      + R +  +  I
Sbjct: 315 EREMQETARRIIRLVRDSQ---------YRYGQIAVIT---GNLEEYGSIARHVFEEAGI 362

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--- 459
               +++  +  +  ++ + A    +       S    L+  + + S  +  ++      
Sbjct: 363 PFFIDEKHSILMNPFVEYVRAALEMVSQGFSYESVFRYLRCGMSDISRSETDRLENYVLA 422

Query: 460 ------RHETETVYEYIQKFANCGISKFQHVIKYI-HELIHIA------------QFCSP 500
                 R   E      +      I +  ++ +    E+  +A                 
Sbjct: 423 LGIHGFRKWDEGWVRLSRDMDPESIMELNNIRERFVTEVRSLAEGFAGKKKTVAEYSRCL 482

Query: 501 HDFF--TLILGAKKGRQQFISRFGNEVID--------VLDEFLNFTLRNEQNSYSSLQEL 550
           ++F   + +      ++    + G+  ++        ++   L+  +        S +E 
Sbjct: 483 YEFIVQSRVQEKLAVQELLFKQHGDRAMEKEYAQIYGIVMNLLDKMVSILGEEKVSAEEY 542

Query: 551 ISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
              LE      K A      ++V +  +   +  +   +F                  + 
Sbjct: 543 RQLLETGMGQAKVALIPPGIDQVLVGDMERTRLKDIRALFFAGVNEGCIPKNTESGGILT 602

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
               D  G             +     + +           LY+  T+ S++L +    +
Sbjct: 603 EMDRDFLGG--------QGIELAPGPKELMNMQRFY-----LYLNFTKPSERLCLSYSMS 649

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
               + +        V   F   +  +  +  N +   E             T  E+ + 
Sbjct: 650 NGKGEATGPAFLIRTVQTLFPKLKTERAEEPQNELELIETPNTAVEYFLSGLTDEEKRKD 709

Query: 730 ------------------------IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                                   I+     + + +   S  K    E    + + ++  
Sbjct: 710 NLIFAELYSWYLNSPIYRTATKKLIEAAFIRKPVDQISKSVAKALYGEVSPNSATRLERF 769

Query: 766 GKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                           E    + +  + G +IH+ L+                    +  
Sbjct: 770 SACAFAHFLKYGLEVKERAEYEFKAMDMGNVIHQALEDF---------AAELHRRKLDWS 820

Query: 815 LWPAKEYKNLLLSITRLLEN-----------------PMMTTAMSCDSYS--EVSVSGKI 855
           +   +    +       +                         +    ++  E   +GK 
Sbjct: 821 VLSDEMRDAIADECLDRISADYGNTILQSSARNRYMIERTRRILRRTVWALQEQLRNGKF 880

Query: 856 NCPKKDIIISG-RIDQISI--SQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSI--YE 908
                ++ I G RID++ I  +   ++  I +YKT        + +   +  Q+ +  Y 
Sbjct: 881 QPEGFEVSIGGGRIDRLDIMKTDDKVYVKIIDYKTG---NTTFDLVSIYYGLQMQLVVYM 937

Query: 909 KIL----KDSYPNKSLV-CLLIY--VSEPKVFIIPQNKLNKAFAEISTKI 951
                  +  YP+  +    + Y  V +P +    Q ++      +  +I
Sbjct: 938 DAAVKAEQRKYPDAEVKPAGIFYYNVKDPML----QKEMEDDLDGLDPEI 983


>gi|241959616|ref|XP_002422527.1| ATP-dependent DNA helicase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
 gi|223645872|emb|CAX40535.1| ATP-dependent DNA helicase, mitochondrial precursor, putative
           [Candida dubliniensis CD36]
          Length = 637

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 87/564 (15%), Positives = 161/564 (28%), Gaps = 146/564 (25%)

Query: 131 KYLNAHYE----------EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
             +   YE          +    N ++ + D I N   LL         + +I ++I  +
Sbjct: 147 ADVAEKYEIVQSDLCDTIKFFNDNGMIRYSDFIRNAIGLL------DISKGEIVKDIQVL 200

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           ++DE QD        I  L E            + +   GD  Q IY F G+ P      
Sbjct: 201 MVDEFQDMQPQLVTFIEKLVE---------FGDKHITLAGDSNQCIYEFLGSSPDITENF 251

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
                   +  G +   I L  SFR +   L + + V    +                  
Sbjct: 252 -------ISKLGWETEEICLNESFRLSPQNLDISNVVIDQNK------------------ 286

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                        +VS  +    P   S  S +D              I   I+ +I   
Sbjct: 287 -------------LVSMKEPSAGPTVYSLVSKYDEYN----------YIGSEIARLICQS 323

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                     ++  D ++L         +  +++F+ + +  +V          +  +  
Sbjct: 324 GGL-------LKFSDFMILA---SQNREVDSISKFMTDHFGYNVNKYSSNSDWVNSNVHI 373

Query: 421 LMALGRFILSQEDDLSFVCMLKS-PLFNFSEDDIFKICTQRHETETV--------YEYIQ 471
           L+ +   +   +   S + +L +      S+  +  +      T++              
Sbjct: 374 LIDILSVLN--KGTGSDLALLCTLMKLGNSKSLVRDLYLSYRSTQSPGLEDYLKSESATC 431

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFC-----SPHDFFTLILGAKKGRQQF-ISRFGNEV 525
           KF      KF+  I     +I   +       S       I+       Q      G++ 
Sbjct: 432 KFNTKPRFKFKERIDLFLNVIQQERKNLDDPVSIMASLARIIKETGIIAQLNKPARGHKD 491

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            +   + LN      ++   S ++  S        ++       + + + TVH AKGLE 
Sbjct: 492 QENETKLLNNLSSFYESLSLSYKKTPSLDYFLNNYLEDEPVLEEHSINVSTVHKAKGLEF 551

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
           PVVF+ +                                          +          
Sbjct: 552 PVVFVTNF-----------------------------------PGYYRSVNA-------- 568

Query: 646 EYNRLLYVGMTRASDQLIICKHSN 669
              RLLYV +TRA + L      N
Sbjct: 569 ---RLLYVALTRAKNLLYTGYQGN 589


>gi|68473229|ref|XP_719420.1| hypothetical protein CaO19.7661 [Candida albicans SC5314]
 gi|46441236|gb|EAL00535.1| hypothetical protein CaO19.7661 [Candida albicans SC5314]
 gi|238880432|gb|EEQ44070.1| hypothetical protein CAWG_02329 [Candida albicans WO-1]
          Length = 637

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 82/581 (14%), Positives = 168/581 (28%), Gaps = 136/581 (23%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           Q    K        K   +      +++       +    N ++ + D I +  +LL   
Sbjct: 130 QLHLEKALSEVREGKDVANVAEKYGISQSDLHETIKFLNDNGMIRYSDFIRDAIELL--- 186

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                 + +I ++I  ++IDE QD        I  L E            + +   GD  
Sbjct: 187 ---DVSKGEIVKDIRVLIIDEFQDMQPQLVTFIEKLVE---------GGNKHITLAGDSN 234

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q IY F G+ P    +         ++ G +   I L  SFR T + L + + V    + 
Sbjct: 235 QCIYEFLGSSPDITQKF-------VSSLGWETEEICLNESFRLTPENLHISNMVIDQNKL 287

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                  +  T+    S+                                          
Sbjct: 288 VSKKEPSAEPTVYSLVSKYD---------------------------------------- 307

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                I   I+ +I             ++  D ++L  + ++   I+             
Sbjct: 308 -EYNYIGSEIARLICQSGGL-------LKFSDFMILASQNREVDSISEFMTNHFGFNVNK 359

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK---ICTQR 460
              N  ++ ++   + D++++       +   S + +L + +   S   + +   +  + 
Sbjct: 360 YSSNSEWVNSNTHVLIDILSIL-----NKGRGSDLALLCTLMKLGSLKQLIRELYLGYRL 414

Query: 461 HETETVYE------YIQKFANCGISKFQHVIKYI-----HELIHIAQFCSPHDFFTLILG 509
            ++ ++ +         KF +    KF+  I  +      E  ++    S       I+ 
Sbjct: 415 SQSTSLEDYLKSESASCKFNSKPRIKFKRQIDLLLNVIEEERKNLGDAVSIMSSLARIVR 474

Query: 510 AKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                        G++  +   + +N      ++   S ++  S         +      
Sbjct: 475 ETDIITYLNKPSRGHKDQENEIKLVNNLTSFYESLSLSYKKTPSLDYFLNNYPEDEPVLE 534

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              + + TVH AKGLE PVVF+ +                                    
Sbjct: 535 ERSINVSTVHKAKGLEFPVVFVTNF----------------------------------- 559

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                   +           RLLYV +TRA + L      N
Sbjct: 560 PGYFGSANE-----------RLLYVALTRAKNLLYTGYQGN 589


>gi|223936290|ref|ZP_03628203.1| ATP-dependentnuclease subunitB [bacterium Ellin514]
 gi|223895152|gb|EEF61600.1| ATP-dependentnuclease subunitB [bacterium Ellin514]
          Length = 1129

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 104/1023 (10%), Positives = 271/1023 (26%), Gaps = 193/1023 (18%)

Query: 7   LSLNESYELIYKDLWPLPYFQVSDINKYVSLSMET--GNPTILKKAQTLQQASQTQCIEE 64
           ++  ++   + + L   P        + +S          ++ K    +         E 
Sbjct: 38  IAPKQTTYQLERQLLAYPSVAGYTRLQILSFERLAFFVFNSLQKPPPQM------LDEEG 91

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDE---FIKIRDRFNTYKMFK 121
           R  +L S    ++   +    +  +   +  L   L++ Q        + +        +
Sbjct: 92  RLMVLRSLLARKRDELKLFRASARLAGFAQHLSRVLRELQHHQLTPESLHELAEQVHAVE 151

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                L     +   Y +  + + + D ++L+    ++L++                   
Sbjct: 152 GLSYKLHDLGTMLRDYLDWLQAHHLQDGDNLLTFATEVLREPHAPLNFGEMW-------- 203

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD--EKQSIYSFHGAEPKRVLR 239
           +D   D S  + +++  +          H    TL    D    + I S+  +      R
Sbjct: 204 VDGFTDLSPQELDLLAQII--------PHVPQATLTFCLDQVPTERI-SWL-SNWSVPRR 253

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                QKR                       + +  ++ +   N      +S   + H  
Sbjct: 254 TYDRCQKRFAGLPN-----------------VELSKELLARHMNRSRFLNNS--PLHHLE 294

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
               +         V +   ++    +ES      + P+       A   A  +   + +
Sbjct: 295 QHWAEPK-----PFVDAATAARPYSLRESLRVITCTNPE-----AEATLAAREVLRFVRS 344

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                       + +++ +LVRK                 Y I    + R  ++ H   +
Sbjct: 345 GG----------RFREVTILVRK---LDNYHEALANTFKRYDIPYFLDRREAVSHHPLAE 391

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---QRHETETVYEYIQKFANC 476
                 R +        +   LK+ L    + +I ++      R    + +++       
Sbjct: 392 LTRNALRTVAFSWSRDDWFAALKTGLVPAEDTEIDRLENEALARGWKGSTWQHP--ILIH 449

Query: 477 GISKFQHVIKYIHE----------------------------LIHIAQFCSPHDFFTLIL 508
              +     + +                              L    Q     +      
Sbjct: 450 DNPELTEWAENLRRKIVPPFKNLAVNMGQQSNRPSGRHLAAALRDFWQSLKVDETLQEWS 509

Query: 509 GAK--KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
            A+      Q        V + ++ +L             L+E +  LE     +     
Sbjct: 510 DAEIAGSDSQLAPPIHLTVWEQMNAWLENVELAFPTETLPLREWLPILEAGLANLNVGVI 569

Query: 567 ANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               ++V I  +  ++  +  +  ++     VF     + + +  +  ++          
Sbjct: 570 PPALDQVLIGAIDRSRNPDIRLALVLGMNEGVFPAPPEQSVLLTDADREELKKKDVELG- 628

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                          +          YV  TRA  ++++      +  K  N   +   +
Sbjct: 629 ------------ASTRQQIGHERYYGYVACTRARQRVVLTSAIFDAAGKPLNPSPFLSQL 676

Query: 686 YDSFHNDE--------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
              F + E          +K +  N +          S            +        +
Sbjct: 677 KQLFPSLETETFPKSLDWRKSEHANELIVPLLRNQVQSPISKVQGVSALNKFPALAALRE 736

Query: 738 KIPKKLFSPIKNDINEP---------YILNPSTIDTKGKTNLESLLSDNQTFN------- 781
           ++     +P +  ++              + S ++       +  +              
Sbjct: 737 RLKHFSTTPTEESLSPELAERLYGPALRTSVSRMEQFAACPFKFFVHSGLRAEERKKFEL 796

Query: 782 ----RGLIIHKLLQ-----------VIFTLPEHKRKNFITSYCT------KNAKLWPAKE 820
               +G   H++L                +   + +  I S         ++  L  ++E
Sbjct: 797 DIRDQGNFQHEVLASFHEQLKTENKRWRDISPQEARERIKSIALTMMVSYRDGLLQVSEE 856

Query: 821 ----YKNLLLSITRLLENPMM----TTAMSCDSYSEVSVSGKI-------NCPKKDIIIS 865
                + L  S+   +E  +       A    +  E+     +             +++ 
Sbjct: 857 TRFTARVLTESLQDFVETLVGWMGQQYAFDPKA-VELPFGEDLFPAWELELGKDHKLLLH 915

Query: 866 GRIDQIS-----ISQQNI--FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN- 917
           GRID+I         +     + +YK+      +   + +    QL+ Y  +L   +P+ 
Sbjct: 916 GRIDRIDICRESEDAEEALCVVVDYKSSQ-KQLDPLLMEHGLQLQLAAYLNVL-RHWPDP 973

Query: 918 KSL 920
           + +
Sbjct: 974 RPI 976


>gi|332092491|gb|EGI97564.1| helicase IV [Shigella boydii 5216-82]
          Length = 684

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMPPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYRFNSRIGKVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 44.9 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 26/219 (11%)

Query: 446 FNFSEDDIFKICTQRHETET-VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                  I++    +    T  +E   +   C +         I ++ +     +P    
Sbjct: 465 VGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRIGKVANRFIQQNPGQLK 524

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +     G ++ ++         LD  L+      +     L        +     K A
Sbjct: 525 KPLNSLTNGDKKAVTLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAA 581

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 ++  MT+H +KG ++  V +V             +  IM      P        
Sbjct: 582 TRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD-- 639

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                E  RL+YV +TRA  ++ 
Sbjct: 640 --------------------AEERRLMYVALTRARHRVW 658


>gi|200391065|ref|ZP_03217676.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603510|gb|EDZ02056.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 684

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|168237129|ref|ZP_02662187.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735557|ref|YP_002114075.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194711059|gb|ACF90280.1| helicase IV [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289865|gb|EDY29226.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 684

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 91/284 (32%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        ++          + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQMF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQMFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|168821818|ref|ZP_02833818.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205341743|gb|EDZ28507.1| UvrD/REP helicase domain protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320085289|emb|CBY95073.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 684

 Score = 95.0 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|320178594|gb|EFW53559.1| DNA helicase IV [Shigella boydii ATCC 9905]
          Length = 684

 Score = 94.6 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMPPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++R  + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYRFNSRIGKVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 44.9 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 26/219 (11%)

Query: 446 FNFSEDDIFKICTQRHETET-VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                  I++    +    T  +E   +   C +         I ++ +     +P    
Sbjct: 465 VGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRIGKVANRFIQQNPGQLK 524

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +     G ++ ++         LD  L+      +     L        +     K A
Sbjct: 525 KPLNSLTNGDKKAVTLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAA 581

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 ++  MT+H +KG ++  V +V             +  IM      P        
Sbjct: 582 TRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD-- 639

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                E  RL+YV +TRA  ++ 
Sbjct: 640 --------------------AEERRLMYVALTRARHRVW 658


>gi|146311131|ref|YP_001176205.1| DNA helicase IV [Enterobacter sp. 638]
 gi|145318007|gb|ABP60154.1| UvrD/REP helicase [Enterobacter sp. 638]
          Length = 684

 Score = 94.6 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 29/196 (14%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
            +      +        +     + L   L   ++ A K+   +DF  LI     +L+K 
Sbjct: 371 AEMIESAPEEVRALFTKR-----VKLMAPLLKAWKTALKEENAVDFSGLIHQAIIILEK- 424

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                   +      HIL+DE QD S                     +   +LFAVGD+ 
Sbjct: 425 -------GRFVSPWKHILVDEFQDISPQ--------RAALLAALRAQNKHTSLFAVGDDW 469

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q+IY F GA+                    +    +L  ++R  + I  + ++      +
Sbjct: 470 QAIYRFSGAQLSLTTAFHHYF--------GEGDRSDLDTTYRFNSRIGEIANRFIQQNPH 521

Query: 284 AQGLSEDSTTTIRHRS 299
                 +S ++   ++
Sbjct: 522 QLAKPLNSLSSGDKKA 537



 Score = 51.5 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 25/182 (13%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                I E+ +     +PH     +     G ++ ++       D L+  L+      + 
Sbjct: 503 RFNSRIGEIANRFIQQNPHQLAKPLNSLSSGDKKAVTLLP---DDQLEALLDKLSGFVKA 559

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L        +     K A      ++  MT+H +KG E+  V ++           
Sbjct: 560 DERILILARYHHLKPSLLEKAATRWPKLKLDFMTIHASKGQEADFVIVLGLQDGSDGFPA 619

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
             +  +M                         L+   +     E  RLLYV MTRA  ++
Sbjct: 620 PARESVME----------------------QALLPEAEDYPDAEERRLLYVAMTRARHRV 657

Query: 663 II 664
            +
Sbjct: 658 WL 659


>gi|167552668|ref|ZP_02346420.1| helicase IV [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322775|gb|EDZ10614.1| helicase IV [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 684

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|260943844|ref|XP_002616220.1| hypothetical protein CLUG_03461 [Clavispora lusitaniae ATCC 42720]
 gi|238849869|gb|EEQ39333.1| hypothetical protein CLUG_03461 [Clavispora lusitaniae ATCC 42720]
          Length = 915

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 91/760 (11%), Positives = 198/760 (26%), Gaps = 123/760 (16%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
            R  F+  +  +       ++           +   VL ++DL++    LL+ +     +
Sbjct: 185 ARGEFSVAEAAER----HKISAAYVEALLSYLEAQGVLRYDDLLLECARLLEGKMPFPRL 240

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                     + +DE QD   +   +I ++ +    G++       L   GD +Q IY F
Sbjct: 241 LTCTK-----VFVDEFQDIHPLLMRIIAAVVKYPTEGQDDVFKH--LTVAGDPRQCIYDF 293

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+   + +  +   +   +         L  SFR T  IL V   +      A+  + 
Sbjct: 294 LGAQRDNMEKLVQHVPRPVADK-------PLCESFRCTQQILDVA-ALIDFGNAAEDKAS 345

Query: 290 DSTTTIRHRSSR-----------------------IGQVGTVQLWEQVVSQHDSQCNPQQ 326
               + +  S +                          V TV       + +  +     
Sbjct: 346 AIVPSAQESSQKETEVQSMEASEKFPANKIVHVKVEADVQTVAATPNTAATNSGRSPGSS 405

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                    L    S        A    + +  + +       ++Q +D+ +L R   + 
Sbjct: 406 HLDKPALALLSNRESGPRPVLLPARNELDHVCKEIVRLLCCSALLQPRDMAILARTNAEA 465

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
              T     L     I  V            +     +   I    D             
Sbjct: 466 TRATAALTAL----GIPAVKVAPGNAWVDSNMHVYRDVLSVICGGSD------------- 508

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                 +  +              +         +      +   +         +   +
Sbjct: 509 -AGLSLLNVMALLDPHRGARARAARTLTKSFEQPYGDQPDALEIFL-------HAELVDM 560

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ-------------ELISE 553
             G   G    I R   + ++ +  FLN   + E+ +  +L              + ++ 
Sbjct: 561 EKGNTSGSLARIYRTCPDSLENIAAFLNQV-QIERETVRALHSQDPLAYTPLQLVQCLAR 619

Query: 554 LEQYPPTIKRAHSANHNEVR--------------IMTVHTAKGLESPV------------ 587
           + +         +A     R              + + + +      +            
Sbjct: 620 MARLAGIHDYVFAAESGSTRPKVGGGSTTSGADLLTSFNNSVHHSFDMYSGSAEAQTMPF 679

Query: 588 --VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
              FL    ++V                     P+    +         ++     S   
Sbjct: 680 IDYFLQTYDNEVPPPNTNSVRVSTIHSAKGLEFPVVFVLASGARTSWEKILAPESFSADY 739

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
               LL+V +TRA   L +   S       S            + + E+ + + L+  + 
Sbjct: 740 ASRHLLFVALTRARTLLYVGSASGHDELPSSV---------RRWFSHEKPQFLTLSTDLP 790

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
             E  A               E    Q   E K  +       +         P+++   
Sbjct: 791 HAESPAQNTELTAALANLSINERDQSQRKQEVKGQQWAEKSGTDRHTMSEYARPTSLLKN 850

Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
             ++L+  L   +   RG   H+L   +   P+  + + I
Sbjct: 851 LASDLKRELPSVEKLTRG---HELYARL--FPKENQPHAI 885


>gi|197251093|ref|YP_002145945.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197214796|gb|ACH52193.1| helicase IV [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 684

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 46.5 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 AYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|320331238|gb|EFW87187.1| UvrD/REP helicase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 436

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 17/146 (11%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 +   Y +  +    +DFE ++     L++     + +   I      +L+DE Q
Sbjct: 158 HEAIGGVLQAYWKELRAERQVDFELILFYAYQLIENYPSISMLLGSI---FECVLLDEFQ 214

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT  IQ+ ++ S+ +    G +        F VGD  Q+IY   G               
Sbjct: 215 DTREIQYAILASILKASKDGTSA-------FVVGDPNQAIYGSLGGYAITAADF------ 261

Query: 247 RATNAGQKFSIIELPLSFRSTADILT 272
             T  G  F  +EL  ++RS++ I++
Sbjct: 262 -GTQCGIAFKEMELSDNYRSSSRIVS 286


>gi|154489095|ref|ZP_02029944.1| hypothetical protein BIFADO_02407 [Bifidobacterium adolescentis
           L2-32]
 gi|154083232|gb|EDN82277.1| hypothetical protein BIFADO_02407 [Bifidobacterium adolescentis
           L2-32]
          Length = 666

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 22/199 (11%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +     K        L L + L   Y    +    +DF  +I +    ++        R
Sbjct: 292 LNERRGGKHIGRNREMLQLVEPLYNAYVGNFRATQGIDFPGMITDAIRCVR--------R 343

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   ++LIDE QD S  ++E+IR+L            S  TLF VGD+ QSIY F 
Sbjct: 344 GAYRHPYKYVLIDEYQDMSRPRYELIRAL---------REQSDFTLFCVGDDWQSIYRFA 394

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           G++   +L    I +           + ++  + R    ++          ++       
Sbjct: 395 GSDIHLILDFADIWRD-----WGPTRMFQITTTRRFRQSLIDASGAFVMQDKSLYAKQLR 449

Query: 291 STTTIRHRSSRIGQVGTVQ 309
           + +  +  S +     T +
Sbjct: 450 NPSDKKDYSLKALGGATQE 468



 Score = 46.1 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 49/432 (11%), Positives = 108/432 (25%), Gaps = 71/432 (16%)

Query: 268 ADILT--VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
             I+     + V     +           +  +       G                  +
Sbjct: 201 RPIIDGHASNAVVRDTFDRLLAQNIPYRLLAFKLMSKELFG------------KYGAAAK 248

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
           +E +    D          L    A TI   +  + I  +G + + + +    + R R+ 
Sbjct: 249 REDFQLPTDDYAFNQYRQSLVEN-AQTIIQHMRQNNIGIDGMRELNERRGGKHIGRNREM 307

Query: 386 TPLITFLTRF----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM- 440
             L+  L        +    I   G     +               ++ +  D+S     
Sbjct: 308 LQLVEPLYNAYVGNFRATQGIDFPGMITDAIRCVRRGAYRHPYKYVLIDEYQDMSRPRYE 367

Query: 441 LKSPLFNFSEDDIFKICTQRH--------------ETETVYEYIQKFANCGISKFQHVIK 486
           L   L   S+  +F +                   +   ++          I+  +   +
Sbjct: 368 LIRALREQSDFTLFCVGDDWQSIYRFAGSDIHLILDFADIWRDWGPTRMFQITTTRRFRQ 427

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG----NEVIDVLDE-FLNFTLRNEQ 541
            + +            +   +      +   +   G     E  D + E           
Sbjct: 428 SLIDASGAFVMQDKSLYAKQLRNPSDKKDYSLKALGGATQEERFDAIVEQLRKLPKAASV 487

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEV----------RIMTVHTAKGLESPVVFLV 591
                 +  ++ L +           +   +          + MT H +KGL+   VFL+
Sbjct: 488 LMLGRYRSDLNLLSRNDRDGLFQIDEHTGGIVFPEKPDMDIKFMTAHASKGLQRDFVFLL 547

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                +                         P +     ++  L+  +++    E  RL 
Sbjct: 548 CCSGGLKGF----------------------PSAIPEEPLLGLLLPEVERMPHAEERRLF 585

Query: 652 YVGMTRASDQLI 663
           YV MTR   +L 
Sbjct: 586 YVAMTRCKKKLF 597


>gi|322616449|gb|EFY13358.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619700|gb|EFY16575.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322622604|gb|EFY19449.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629753|gb|EFY26528.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322632525|gb|EFY29271.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322636980|gb|EFY33683.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322641480|gb|EFY38118.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646053|gb|EFY42569.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649645|gb|EFY46076.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654054|gb|EFY50377.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658586|gb|EFY54848.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322663443|gb|EFY59645.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322670179|gb|EFY66319.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322671415|gb|EFY67537.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676771|gb|EFY72838.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682695|gb|EFY78714.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322686375|gb|EFY82357.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195131|gb|EFZ80313.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199814|gb|EFZ84903.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202807|gb|EFZ87843.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209078|gb|EFZ94015.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323217962|gb|EGA02677.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222407|gb|EGA06784.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323226567|gb|EGA10772.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229763|gb|EGA13886.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323232988|gb|EGA17084.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240723|gb|EGA24765.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243039|gb|EGA27060.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249798|gb|EGA33700.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252730|gb|EGA36568.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323259967|gb|EGA43595.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268033|gb|EGA51512.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269881|gb|EGA53330.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 684

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|307132009|ref|YP_003884025.1| DNA helicase IV [Dickeya dadantii 3937]
 gi|306529538|gb|ADM99468.1| DNA helicase IV [Dickeya dadantii 3937]
          Length = 685

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L L   L   +++A K    +DF  LI    + L K         +      HIL+DE Q
Sbjct: 389 LRLMAPLLKAWKKALKDEGAVDFSGLIHQAINFLDK--------GRFVSPWRHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L               +LFAVGD+ Q+IY F GAE       ++    
Sbjct: 441 DISPQRARLLDALRRQA--------PDSSLFAVGDDWQAIYRFSGAELTLTTAFEQHF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  + +   L  ++R    I  +  +           + +S      +S
Sbjct: 491 ------GEGAQCVLDTTYRFNHRIGDIASRFIQQNPAQLKKTLNSLRDGNKKS 537



 Score = 48.0 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 104/348 (29%), Gaps = 42/348 (12%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD----ILVLVRKRKDTPLITFLTRFLK 397
            + +A R+A  +   +G   +    +  ++   D     L   R R   PL+    + LK
Sbjct: 345 DAAIASRLAGRLERWLGLMRMQGGTQSEMLALADDETRPLFQQRLRLMAPLLKAWKKALK 404

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM----------LKSPLFN 447
           ++  +   G     +      + +      ++ +  D+S                S LF 
Sbjct: 405 DEGAVDFSGLIHQAINFLDKGRFVSPWRHILVDEFQDISPQRARLLDALRRQAPDSSLFA 464

Query: 448 FSEDDIFKICTQRHE---TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
             +D          E   T    ++  + A C +         I ++       +P    
Sbjct: 465 VGDDWQAIYRFSGAELTLTTAFEQHFGEGAQCVLDTTYRFNHRIGDIASRFIQQNPAQLK 524

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +   + G ++ +     E    L+  L+            L        +     K  
Sbjct: 525 KTLNSLRDGNKKSVVLLPQEQ---LEALLDKMSGYVATEARILVLARYHHLRPDALEKAP 581

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
               H ++  MT+H +KG ++  V ++             +  ++ ++      P     
Sbjct: 582 TRWPHLQLDFMTIHASKGQQADYVIVLGLHEGRDGFPAPPRESVLEAVLLPRPEPFPD-- 639

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                E  RLLYV +TRA  Q+ +    +  +
Sbjct: 640 --------------------AEERRLLYVALTRAKHQVWLLYDRDEPS 667


>gi|332076308|gb|EGI86774.1| uvrD/REP helicase family protein [Streptococcus pneumoniae GA41301]
          Length = 605

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 68/519 (13%), Positives = 146/519 (28%), Gaps = 134/519 (25%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
            +IR  +    + + +DE QDT+  Q+ ++++             S   L AVGD+KQ+I
Sbjct: 197 EYIRKALQLTYDFVFLDEFQDTTYAQYSLLKTCFL---------GSSCKLTAVGDDKQAI 247

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
             + GA+P       R             +  +L ++ RS   ++               
Sbjct: 248 MRWAGAKPDIFPDYIRDF---------NSNEYQLLMNHRSVPKLVEF------------- 285

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                 ++ + + S H S        +     +L +  + S+ A
Sbjct: 286 --------------------QKEVHQILNSNHSSIQTNNYLEFQEGEITLFEFENESLEA 325

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + IA  I + I             I+  +I +L +++            + N   I    
Sbjct: 326 KLIANDIESKIQGG----------IRPSEICILAKQKVGIYSFE--LISILNGKGIKARI 373

Query: 407 N-DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             +   +        L+ L      + D L +  +          D++          + 
Sbjct: 374 ENEYQDILKDPTCNLLLDLISCSQGKRDPLIWENISNFYGNINGIDELTDELILAKSYKE 433

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
           +   +        +      + ++                 I+     ++   +      
Sbjct: 434 IDNIVSDITYLISNPIPDKDRMLN-------------LINCIIEKIGDKRIISNFPMYNG 480

Query: 526 IDVLDEFLN-----FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
            + L   +N           Q+  + +  + +                 N + IMT+H +
Sbjct: 481 KNDLLITINKFSKLLYEEYSQSQGAWIDIISNF-------------KGENSISIMTIHKS 527

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE   V+ +      F   +                                      
Sbjct: 528 KGLEYEAVYFLGLEDSAFWSFN-------------------------------------- 549

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
               EE     +V ++RA   LI       +N  ++N+ 
Sbjct: 550 -DQPEEDKSAFFVALSRAKSHLIFTYCKLRNNSPQNNRN 587


>gi|260576816|ref|ZP_05844800.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
 gi|259020959|gb|EEW24271.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2]
          Length = 1415

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 102/288 (35%), Gaps = 34/288 (11%)

Query: 3    NRFGLSLNESYELIYKD--LWPLPYFQVSDINKY-VSLSMETGNPTILKKAQTLQQASQT 59
               GL   +  + +  D  +     F    +      +  +T   +       L   +Q 
Sbjct: 994  AETGLEAMDQAQRLAGDYFVLDRDAFLRRWLPGRGTEIRRQTTGASWRTIVDALDNPAQA 1053

Query: 60   QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
            + + +     +   L    + +  ++   +++ +  ++ K +  +   +   +R    ++
Sbjct: 1054 EIVRDDREQTNVLVLAGPGSGKTRVL---VHRIAYLIRVKREDPRGILVLTYNRHAAAEI 1110

Query: 120  FKSTLASL-TLAKYLNAHYEEAKKKN-----------CVLDFEDLIINTNDLLKKR---- 163
             +     +   A ++      A                  DF+ +++    LL+      
Sbjct: 1111 RERLRLLIGEDAAWVTVSTCHALAMRLVGASFAGDGDGPRDFDGIVMQAVALLRGDGLSR 1170

Query: 164  DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
              +  +R  + Q    +L+DE QD    ++ +I ++       ++      +LFAVGD+ 
Sbjct: 1171 PEAEALRDTLIQGYRWLLVDEYQDIGPEEYALISAVAGR---SQDDPDLRISLFAVGDDD 1227

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
            Q+IY+F GA    + R +                I L  ++RST  I+
Sbjct: 1228 QNIYAFAGASIAFIRRFEADY---------AAKPIWLTENYRSTRHII 1266


>gi|328884883|emb|CCA58122.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 242

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 63/253 (24%), Gaps = 30/253 (11%)

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
           ++             +   +      +L   +   + +  P     ++   L        
Sbjct: 1   EEAHPLTPEDARTIASWDRDLTALTAELRRTRATTRDVVLPAYLSASQVLRLAADPDGFA 60

Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQV------IFTLPEHKRKNFITSYCTKNAKLWPAK 819
            +       +      RG   H  ++       +  L   +             ++   +
Sbjct: 61  QELARPMPKAPQPAARRGTRFHAWVESRFEELPLPFLGPEELPGGED--FAGEPEILDER 118

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-- 877
           +   L  +  R                +   V   ++      ++ GRID +     +  
Sbjct: 119 DLDELKEAFART----------PYAHRTPYRVEVPVHLSLGGRVVRGRIDAVYRDPDSGA 168

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS--LVCLLIYVSEPKVFII 935
             I ++KT      +          QL+IY     + +      +    +YV   +V   
Sbjct: 169 YEIVDWKTSRVRTADP--------LQLAIYRLAWAEQHGLAPEDVAAAFVYVRTGEVARP 220

Query: 936 PQNKLNKAFAEIS 948
            +         + 
Sbjct: 221 TRLPGRAELEALL 233


>gi|89068509|ref|ZP_01155906.1| Possible DNA helicase [Oceanicola granulosus HTCC2516]
 gi|89045928|gb|EAR51988.1| Possible DNA helicase [Oceanicola granulosus HTCC2516]
          Length = 493

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 88/265 (33%), Gaps = 43/265 (16%)

Query: 148 DFEDLIINTNDLLKKRD----VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           DF+ +++     L         +   R  + Q    IL+DE +D    ++ +I ++    
Sbjct: 19  DFDGIVMEAVRQLNGEGLSKAEAEAQRETLIQGYRWILVDEYRDIGPEEYALIAAVAGRT 78

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
              ++      +LFAVGD+ Q+IY+F GA  K + + ++  + +            L  +
Sbjct: 79  IDDEDM---KLSLFAVGDDDQNIYAFAGASVKFIRQFEQDYRAKPE---------FLIEN 126

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +RST  I+   + V +       L  D T     R  R    G   L           C+
Sbjct: 127 YRSTRHIIEASNTVIAGAVERMKLGHDITID---RKRRKNSPGGGVL---------EACD 174

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
           P            P +   ++ A      ++ +           +         ++ R  
Sbjct: 175 PVGHGRVQLLQCPPGDRMQAVAAVSELQRLAEL-----------QPGWNWSRTAIIARNW 223

Query: 384 KDTPLITFLTRFLKNDYKISVVGND 408
           +    +    R       I V   +
Sbjct: 224 RQLAPV----RAFAEAQGIPVEMAN 244



 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 61/261 (23%), Gaps = 48/261 (18%)

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL-ILGAKKGR 514
           I  +            +     +      +  +  L  + QF          +LG     
Sbjct: 218 IIARNWRQLAPVRAFAEAQGIPVEMANESLPSLWRLREMRQFIDRIRRDRTRVLGVTDLL 277

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
                   N   D++ E +    +       S+ +L+           R        + +
Sbjct: 278 DVVNDMQRNRWTDLIAEGIAALAQEIGTGQVSVPDLVEWF----GEWARDARGEQRGLLL 333

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT H AK LE   V +++ G +  S                                   
Sbjct: 334 MTAHRAKALEFDDVVILNGGWERPSRNEDFDAP--------------------------- 366

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                         RL YV MTRA   L                     +   +   D R
Sbjct: 367 -------------RRLFYVAMTRARRSL---AVMTQGPHAFVPANGDNILRRHATLPDAR 410

Query: 695 VKKIKLTNSINKDEWIAYEWS 715
                 T  +     +  +WS
Sbjct: 411 DLPPDRTYLMPDMSQVFIDWS 431


>gi|323157142|gb|EFZ43265.1| helicase IV domain protein [Escherichia coli EPECa14]
          Length = 348

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 53  IKLMAPLLKAWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQ 104

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+             
Sbjct: 105 DISPQRAALLAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF-- 154

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +    +L  ++R  + I  V ++             +S T    ++
Sbjct: 155 ------GEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKA 201



 Score = 46.1 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 94/340 (27%), Gaps = 42/340 (12%)

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFL 396
               L RR+A  +   +    +    +  +I    ++I  L  KR     PL+      L
Sbjct: 8   DDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGAL 67

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIF 454
           K +  +   G     +      + +      ++ +  D+S     +L +     S+  +F
Sbjct: 68  KAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLF 127

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDF 503
            +                        F                 I E+ +     +P   
Sbjct: 128 AVGDDWQAIYRFSGAQMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQL 187

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              +     G ++ ++         LD  L+      +     L        +     K 
Sbjct: 188 KKPLNSLTNGDEKAVTLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKA 244

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
           A      ++  MT+H +KG ++  V +V             +  IM      P       
Sbjct: 245 ATRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD- 303

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                                 E  RL+YV +TRA  ++ 
Sbjct: 304 ---------------------AEERRLMYVALTRARHRVW 322


>gi|224584418|ref|YP_002638216.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224468945|gb|ACN46775.1| helicase IV [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
          Length = 684

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|270261242|ref|ZP_06189515.1| hypothetical protein SOD_a04670 [Serratia odorifera 4Rx13]
 gi|270044726|gb|EFA17817.1| hypothetical protein SOD_a04670 [Serratia odorifera 4Rx13]
          Length = 684

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 66/173 (38%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI    ++L+K         +      HIL+DE Q
Sbjct: 389 IRLMAPLLKAWKSALKDEGAVDFSGLIHQAVNILEK--------GRFVSPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  + +++ +L +         +    LFAVGD+ Q+IY F GAE             
Sbjct: 441 DISPQRAQLLAALRK--------QNKQTCLFAVGDDWQAIYRFSGAELTLTTAFAENF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  + +   L  ++R    I  V ++      +      +S +    +S
Sbjct: 491 ------GEGAQCALDTTYRFNDRIGEVANRFVQQNPHQLKKPLNSLSKGNKKS 537



 Score = 46.8 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 116/402 (28%), Gaps = 49/402 (12%)

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES------ 340
           + + +                  L      Q  ++   Q + W  +     +        
Sbjct: 283 IQQGNRKVPAISKLETDSKARRTLLITHWQQQCAEKKAQAKGWRQWLMEELEWDVPEGDF 342

Query: 341 -SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF---- 395
                LA R+A  +   +G   +    +  +I+  D  +     K   L+  L +     
Sbjct: 343 WQDKRLAERLAGRLERWLGLMRMHGGSQAEMIEQADEEIRDLFSKRIRLMAPLLKAWKSA 402

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPL 445
           LK++  +   G     +      + +      ++ +  D+S               ++ L
Sbjct: 403 LKDEGAVDFSGLIHQAVNILEKGRFVSPWKHILVDEFQDISPQRAQLLAALRKQNKQTCL 462

Query: 446 FNFSEDDIFKICTQRHE---TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           F   +D          E   T    E   + A C +         I E+ +     +PH 
Sbjct: 463 FAVGDDWQAIYRFSGAELTLTTAFAENFGEGAQCALDTTYRFNDRIGEVANRFVQQNPHQ 522

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               +    KG ++ +    +E ++     L+      +     L        +     K
Sbjct: 523 LKKPLNSLSKGNKKSVVILPHEQLEN---LLDKLSGYAKPDERILVLARYHHLKPEVLSK 579

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
            A       +  MT+H +KG ++  V +                          G P   
Sbjct: 580 AATRWPKLTLEFMTIHASKGQQAEYVIIAGLHEGS------------------DGFPAVA 621

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            +S   + ++             E  RLLYV +TRA  Q+ +
Sbjct: 622 RESVLEDVLLPQPEDFPDA----EERRLLYVALTRAKHQVWL 659


>gi|255284295|ref|ZP_05348850.1| UvrD/REP helicase [Bryantella formatexigens DSM 14469]
 gi|255265142|gb|EET58347.1| UvrD/REP helicase [Bryantella formatexigens DSM 14469]
          Length = 588

 Score = 94.6 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 22/145 (15%)

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y++      ++   +  +    LLKK      +   I +    I+IDEVQDTS+ Q  
Sbjct: 169 QQYKKMLSDRGIVFQNETALFAYQLLKKYPE---VAAAIAERFPIIIIDEVQDTSISQMA 225

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           V   L+E         S  +++F VGD  QSIY +  A PK +L++              
Sbjct: 226 VFDLLSE---------SGMKSIFLVGDPDQSIYEWRNANPKCMLQKLED---------PN 267

Query: 255 FSIIELPLSFRSTADILTVVDKVFS 279
           +  IEL  +FRS+ +I   V  +FS
Sbjct: 268 WETIELTGNFRSSQNICN-VTSLFS 291


>gi|290961676|ref|YP_003492858.1| hypothetical protein SCAB_73381 [Streptomyces scabiei 87.22]
 gi|260651202|emb|CBG74323.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 307

 Score = 94.2 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 72/248 (29%), Gaps = 29/248 (11%)

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQT 779
           ET         +  +   P++     P  L+PS      +  L              ++ 
Sbjct: 2   ETSTDGTVPAPVGGEDARPVERAAAPPASLSPSRASDFMQCPLLYRFRVIDRLPEKPSEA 61

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
             RG ++H +L+ +F  P  +R                 +    +        E   +  
Sbjct: 62  ATRGTLVHAVLERLFDAPAAERTAPRARSLVPGQWDRLRETRPEVEELFADDEEGERLAR 121

Query: 840 AMS-CDSYSEVSVSGKINCPKK--------------DIIISGRIDQISISQ-QNIFIFEY 883
            ++  +   E   + +     +               + + G ID++ ++    + I +Y
Sbjct: 122 WLAEAEQLVERWFTLEDPTRLEPAERELFVEAELESGLRLRGIIDRVDVAPTGEVRIVDY 181

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
           KT               + Q+  Y  ++            L+Y+    V  +  + +   
Sbjct: 182 KTGKAPRP---EYAEGALFQMKFYALVVWRLKRVVPRRLQLVYLGSGDV--LTYDPVIAD 236

Query: 944 FAEISTKI 951
              +  K+
Sbjct: 237 LERVERKL 244


>gi|218194490|gb|EEC76917.1| hypothetical protein OsI_15164 [Oryza sativa Indica Group]
          Length = 684

 Score = 94.2 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 82/288 (28%), Gaps = 42/288 (14%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +   +  D        ++   +  +              + L+                 
Sbjct: 292 AISRLETDAKARKELLITHWRQQCAEKKAQAKGWRQWLTEELEWEVPEGDF------WQD 345

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L  +   +       +        E ++++ +E   +  +             + L  
Sbjct: 346 KRLADRLASRLERWLGLMRMHGGSQAEMIEQADEEIRDLFSKR------------IRLMA 393

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   ++ A K+   +DF  LI    ++L K         +      HIL+DE QD S  
Sbjct: 394 PLLKAWKSALKEEGAVDFSGLIHQAVNILDK--------GRFVSPWKHILVDEFQDISPQ 445

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
                              +    LFAVGD+ Q+IY F GAE                  
Sbjct: 446 --------RALLLAALRRQNKQTCLFAVGDDWQAIYRFSGAELTLTTAFATNF------- 490

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             + +   L  ++R    I  V ++      +      +S +    +S
Sbjct: 491 -GEGAQCALDTTYRFNERIGEVANRFVQQNPHQLKKPLNSLSKGNKKS 537



 Score = 42.6 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 55/386 (14%), Positives = 114/386 (29%), Gaps = 49/386 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L      Q  ++   Q + W  +     +             LA R+A  +  
Sbjct: 299 DAKARKELLITHWRQQCAEKKAQAKGWRQWLTEELEWEVPEGDFWQDKRLADRLASRLER 358

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
            +G   +    +  +I+  D  +     K   L+  L +  K+  K     +   ++   
Sbjct: 359 WLGLMRMHGGSQAEMIEQADEEIRDLFSKRIRLMAPLLKAWKSALKEEGAVDFSGLIHQA 418

Query: 416 LAIKD----LMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRH 461
           + I D    +      ++ +  D+S    L          ++ LF   +D          
Sbjct: 419 VNILDKGRFVSPWKHILVDEFQDISPQRALLLAALRRQNKQTCLFAVGDDWQAIYRFSGA 478

Query: 462 ETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
           E      +   F               + I E+ +     +PH     +    KG ++ +
Sbjct: 479 ELTLTTAFATNFGEGAQCALDTTYRFNERIGEVANRFVQQNPHQLKKPLNSLSKGNKKSV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +   +E ++     L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TILPHEQLEP---LLDKLSGYAKPDERILVLARYHHLKPEALAKAATRWPKLDLEFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +                                P     + +   L+  
Sbjct: 596 ASKGQQAEYVIIAGLHE----------------------ARDGFPAVARESVLEEVLLPQ 633

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLII 664
            +     E  RLLYV +TRA  Q+ +
Sbjct: 634 PEDFPDAEERRLLYVALTRAKHQVWL 659


>gi|29833214|ref|NP_827848.1| hypothetical protein SAV_6672 [Streptomyces avermitilis MA-4680]
 gi|29610336|dbj|BAC74383.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 286

 Score = 94.2 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 29/223 (13%)

Query: 753 EPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
            P  L+PS      +  L              ++   RG ++H +L+ +F  P  +R   
Sbjct: 6   PPRSLSPSRASDFMQCPLLYRFRVIDKLPEKPSEAATRGTLVHAVLERLFDAPAAERTAP 65

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-CDSYSEVSVSGKINCPKK--- 860
                         +    ++       E   +   +   +   E   S +     +   
Sbjct: 66  RARSLVPGQWDRLRESRPEVVELFADDPEGERLARWLGEAEQLVERWFSLEDPTRLEPAE 125

Query: 861 -----------DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       + + G ID++ ++    + I +YKT               + Q+  Y 
Sbjct: 126 RELFVEAELDSGLRLRGIIDRVDVAPSGEVRIVDYKTGKAPRP---EYAEGALFQMKFYA 182

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            ++            L+Y+    V  +  + +      +  K+
Sbjct: 183 LVVWRLKNVVPRRLQLVYLGSGDV--LTYDPVVADLERVERKL 223


>gi|300777523|ref|ZP_07087381.1| UvrD/REP helicase subfamily [Chryseobacterium gleum ATCC 35910]
 gi|300503033|gb|EFK34173.1| UvrD/REP helicase subfamily [Chryseobacterium gleum ATCC 35910]
          Length = 561

 Score = 94.2 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 27/144 (18%)

Query: 137 YEEAKK---KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
           Y + KK   +  +L  +D++     ++KK     ++   I+++  ++ IDE QD++ IQ 
Sbjct: 175 YFDYKKMTWQRGILHHDDVLFFAYQIIKKFP---FVIKIINKKFPYVFIDEFQDSNPIQV 231

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +I  L           S+  T+  +GD  QSIY+F GA P                   
Sbjct: 232 NIIEKL-----------STGSTIGIIGDVAQSIYAFQGATPALFDGF----------TLP 270

Query: 254 KFSIIELPLSFRSTADILTVVDKV 277
           +     L  + RST +I+  ++ +
Sbjct: 271 EMEHYFLKFNRRSTNEIIDFLNII 294


>gi|157146346|ref|YP_001453665.1| DNA helicase IV [Citrobacter koseri ATCC BAA-895]
 gi|157083551|gb|ABV13229.1| hypothetical protein CKO_02105 [Citrobacter koseri ATCC BAA-895]
          Length = 684

 Score = 94.2 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 79/247 (31%), Gaps = 33/247 (13%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
           +Q +   +       + L +        + + +  +       +                
Sbjct: 320 AQAKGWRQWLEEEMQWPLPEGNFWDDEKLQRRLASRLDRWVSLM-----RMHGGAQAEMI 374

Query: 117 YKMFKSTLASL----TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
               +           L   L   ++ A K+   +DF  LI     +L+K         +
Sbjct: 375 ASAPEEIRDLFGKRIKLMAPLLKAWKGALKEENAVDFSGLIHQAIVILEK--------GR 426

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                 HIL+DE QD S  +  ++ +L +         +S  TLFAVGD+ Q+IY F GA
Sbjct: 427 FISPWKHILVDEFQDISPQRAALLAALRK--------QNSHTTLFAVGDDWQAIYRFSGA 478

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +                    +    +L  ++R    I  + ++      +      +S 
Sbjct: 479 QLSLTTAFHHTF--------GEGDRCDLDTTYRFNGRIGEIANRFIQQNPHQLKKPLNSL 530

Query: 293 TTIRHRS 299
           T    ++
Sbjct: 531 TAGDKKA 537



 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 25/182 (13%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                I E+ +     +PH     +     G ++ ++         LD  L+      + 
Sbjct: 503 RFNGRIGEIANRFIQQNPHQLKKPLNSLTAGDKKAVTLLDENQ---LDALLDKLSGYAKE 559

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L        +     K A      ++  MT+H +KG ++  V +V           
Sbjct: 560 DERILVLARYHHLKPASLEKAATRWPKLQLNFMTIHASKGQQADYVIIVGLQEGSDGFPA 619

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
             +  IM                         L+  ++     E  RLLYV +TRA  ++
Sbjct: 620 PARESIME----------------------EALLPQVEDFPDAEERRLLYVALTRARHRV 657

Query: 663 II 664
            +
Sbjct: 658 WL 659


>gi|161614730|ref|YP_001588695.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161364094|gb|ABX67862.1| hypothetical protein SPAB_02482 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 684

 Score = 94.2 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|323947248|gb|EGB43256.1| UvrD/REP helicase [Escherichia coli H120]
          Length = 684

 Score = 94.2 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 389 IKLMAPLLKAWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+             
Sbjct: 441 DISPQRAALLAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +    +L  ++R  + I  V ++             +S T    ++
Sbjct: 491 ------GEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKA 537



 Score = 46.5 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWCKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I E+ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGDRCDLDTTYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDEKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|317491508|ref|ZP_07949944.1| UvrD/REP helicase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316921055|gb|EFV42378.1| UvrD/REP helicase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 684

 Score = 94.2 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 56/365 (15%), Positives = 109/365 (29%), Gaps = 41/365 (11%)

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLT 128
                L  +  P+       + +      + ++ + +E   +  +             + 
Sbjct: 343 WQDKKLAMRLAPKLERWVGLMREHGGSQSQMIEDAPEEIRDLFQKR------------IR 390

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L   L   ++ A K    +DF  LI     +L K         +      HIL+DE QD 
Sbjct: 391 LMSPLLKAWKSALKDEGAVDFPGLIQQAIAVLDK--------GRFISPWKHILVDEFQDI 442

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           S  +  ++ SL +         +S   LFAVGD+ Q+IY F GAE        +      
Sbjct: 443 SPQRARLLESLRK--------QNSRTNLFAVGDDWQAIYRFSGAELSLTTAFTQHF---- 490

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                     EL  ++R    I  + +       +    S +S +    ++  I     +
Sbjct: 491 ----GDSDRRELDTTYRFNRRIGEIANGFIQQNPHQLRKSLNSLSEGPKKAVTILPQERL 546

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +  + +          ++    + +  L  E       R    TI  M    +       
Sbjct: 547 E--DLLNKLSGYVKPEERILILARYRYLKPEILDKAATRWPKLTIDFMTIHGSKGQQADY 604

Query: 369 RVIQ-AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +I   +D            +I  +   L            R +       +  + L + 
Sbjct: 605 VIILGLQDGKDGFPATTGESVIEQVL--LPQSEDFPDAEERRLLYVALTRARHQVWLLQD 662

Query: 428 ILSQE 432
             +  
Sbjct: 663 TDNPS 667



 Score = 48.0 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 121/377 (32%), Gaps = 45/377 (11%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIG--TDTI 362
           V+ W+Q  S   +Q    ++  T   +             LA R+A  +   +G   +  
Sbjct: 308 VKAWQQECSAKKAQAKGWRQWLTEDLEWQVEEENYWQDKKLAMRLAPKLERWVGLMREHG 367

Query: 363 FSNGKKRVIQAKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            S  +      ++I  L +KR    +PL+      LK++  +   G  +  +      + 
Sbjct: 368 GSQSQMIEDAPEEIRDLFQKRIRLMSPLLKAWKSALKDEGAVDFPGLIQQAIAVLDKGRF 427

Query: 421 LMALGRFILSQEDDLSFVCML----------KSPLFNFSEDDIFKICTQRHETETVYEYI 470
           +      ++ +  D+S               ++ LF   +D          E      + 
Sbjct: 428 ISPWKHILVDEFQDISPQRARLLESLRKQNSRTNLFAVGDDWQAIYRFSGAELSLTTAFT 487

Query: 471 QKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           Q F +    +        + I E+ +     +PH     +    +G ++ ++    E   
Sbjct: 488 QHFGDSDRRELDTTYRFNRRIGEIANGFIQQNPHQLRKSLNSLSEGPKKAVTILPQER-- 545

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L++ LN      +     L        +     K A       +  MT+H +KG ++  
Sbjct: 546 -LEDLLNKLSGYVKPEERILILARYRYLKPEILDKAATRWPKLTIDFMTIHGSKGQQADY 604

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V ++                               P +   + I   L+   +     E 
Sbjct: 605 VIILGLQDGK----------------------DGFPATTGESVIEQVLLPQSEDFPDAEE 642

Query: 648 NRLLYVGMTRASDQLII 664
            RLLYV +TRA  Q+ +
Sbjct: 643 RRLLYVALTRARHQVWL 659


>gi|212715429|ref|ZP_03323557.1| hypothetical protein BIFCAT_00324 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661604|gb|EEB22179.1| hypothetical protein BIFCAT_00324 [Bifidobacterium catenulatum DSM
           16992]
          Length = 584

 Score = 94.2 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 22/199 (11%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
            +  +  K        L L + L   Y    +    +DF  +I +    ++        R
Sbjct: 210 LNERSGGKNVGRNREMLQLIEPLYNAYISNFRTTHGIDFPGMITDAIRCIQ--------R 261

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                   ++LIDE QD S  ++E+IR+L            S  TLF VGD+ QSIY F 
Sbjct: 262 GAYRHPYKYVLIDEYQDMSRPRYELIRAL---------REQSDFTLFCVGDDWQSIYRFA 312

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           G++   +L    I +           + ++  + R    ++          ++       
Sbjct: 313 GSDIHLILDFAEIWRT-----WGPTRMFQITTTRRFRQSLIDASGAFVMQDKSLYVKHLH 367

Query: 291 STTTIRHRSSRIGQVGTVQ 309
           + +  +  S +     T +
Sbjct: 368 NPSDKKDYSLKALGGATQE 386



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 139/574 (24%), Gaps = 99/574 (17%)

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ I   +   L       +       T  + GD  Q I +  G   +            
Sbjct: 52  TTTIIGYIAWLLATKRAAPEEILVLSFTKASAGDMSQRIMASTGKTIRACT--------- 102

Query: 248 ATNAGQKFSIIELPLSFRSTADILTV--VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
             + G +        +      I+     + V                 +  +      +
Sbjct: 103 FHSLGLEICRAATIANR----PIIDGHTSNTVVRNTFEQLLSKNIGYRLLAFKLMSKELL 158

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
           G                  + E +    D          L    A TI   +  ++I  +
Sbjct: 159 G------------KYGKAAKSEDFQLPTDDYGFNQYKQNLIEN-AQTIIQHMRQNSIGID 205

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND----YKISVVGNDRFILTDHLAIKDL 421
           G + + +      + R R+   LI  L     ++    + I   G     +         
Sbjct: 206 GMRELNERSGGKNVGRNREMLQLIEPLYNAYISNFRTTHGIDFPGMITDAIRCIQRGAYR 265

Query: 422 MALGRFILSQEDDLSFVCM-LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
                 ++ +  D+S     L   L   S+  +F +                        
Sbjct: 266 HPYKYVLIDEYQDMSRPRYELIRALREQSDFTLFCVGDDWQSIYRFAGSDIHLILDFAEI 325

Query: 481 FQ--------------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG-NEV 525
           ++                 + + +            +   +      +   +   G    
Sbjct: 326 WRTWGPTRMFQITTTRRFRQSLIDASGAFVMQDKSLYVKHLHNPSDKKDYSLKALGGATQ 385

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISE------LEQYPPTIKRAHSANHNEV------- 572
            +  D  +    +  +   +S+  L         L +           +   +       
Sbjct: 386 EERFDAIIEQLRKLPKT--ASVLMLGRYKSDLNLLSRNDRDGLFQIDEHTGGIVFLEKPK 443

Query: 573 ---RIMTVHTAKGLESPVVFLVDTGSQV--FSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
                MT H +KGL+   VFL+     +  F     ++  +   L +   +P        
Sbjct: 444 MDIEFMTAHKSKGLQRDFVFLLCCSGGLKGFPSAIPEEPLLGLLLPEVERMPH------- 496

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                             E  RL YV MTR   +L          ++    R  Y++   
Sbjct: 497 -----------------AEERRLFYVAMTRCRKKLFFVV------DQSRPSRFMYELHDR 533

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
              N  R  K+      N  E +    +   P  
Sbjct: 534 ICPNIFRGVKLP-PQCPNCGEALRLRHAGSDPSR 566


>gi|293396721|ref|ZP_06640997.1| helicase IV [Serratia odorifera DSM 4582]
 gi|291420985|gb|EFE94238.1| helicase IV [Serratia odorifera DSM 4582]
          Length = 684

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 98/335 (29%), Gaps = 43/335 (12%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +   +  D        V    +                   L                  
Sbjct: 292 AISKLETDSKARRELLVKTWQQQCGEKKAQAKGWRQWLIDELAWEVPDGDF------WQD 345

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L ++   +       +        E ++++ +E   +  +             + L  
Sbjct: 346 KRLAERLAGRLERWLGLMRMHGGSQAEMIEQANEEVRDLFSKR------------IRLMA 393

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   ++ A K    +DF  LI    ++L K         +      HIL+DE QD S  
Sbjct: 394 PLLKAWKSALKDEGAVDFSGLIHQAVNILAK--------GRFVSPWKHILVDEFQDISPQ 445

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           + +++ +L +         +    LFAVGD+ Q+IY F GAE                  
Sbjct: 446 RAQLLAALRK--------QNKQTCLFAVGDDWQAIYRFSGAEMALTTAFADNF------- 490

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ-L 310
             + +   L  ++R    I  + ++      +      +S +    +S  I     ++ L
Sbjct: 491 -GEGAQCALDTTYRFNERIGEIANRFVQQNPHQLKKPLNSLSKGNKKSVAILPQDQIESL 549

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            +++             +   +      + +A+  
Sbjct: 550 LDKLSGYAKPDERILLLARYHHLKPEALQKAATRW 584



 Score = 44.1 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 56/402 (13%), Positives = 114/402 (28%), Gaps = 49/402 (12%)

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES------ 340
           + + S                 +L  +   Q   +   Q + W  +              
Sbjct: 283 IQQGSRKAPAISKLETDSKARRELLVKTWQQQCGEKKAQAKGWRQWLIDELAWEVPDGDF 342

Query: 341 -SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF---- 395
                LA R+A  +   +G   +    +  +I+  +  V     K   L+  L +     
Sbjct: 343 WQDKRLAERLAGRLERWLGLMRMHGGSQAEMIEQANEEVRDLFSKRIRLMAPLLKAWKSA 402

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPL 445
           LK++  +   G     +      + +      ++ +  D+S               ++ L
Sbjct: 403 LKDEGAVDFSGLIHQAVNILAKGRFVSPWKHILVDEFQDISPQRAQLLAALRKQNKQTCL 462

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHD 502
           F   +D          E      +   F               + I E+ +     +PH 
Sbjct: 463 FAVGDDWQAIYRFSGAEMALTTAFADNFGEGAQCALDTTYRFNERIGEIANRFVQQNPHQ 522

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               +    KG ++ ++       D ++  L+      +     L        +     K
Sbjct: 523 LKKPLNSLSKGNKKSVAILP---QDQIESLLDKLSGYAKPDERILLLARYHHLKPEALQK 579

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
            A       +  MT+H +KG ++  V +V                         G P   
Sbjct: 580 AATRWPKLNLEFMTIHASKGQQAEYVIIVGLHQG------------------HDGFPALA 621

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            +S   + ++             E  RLLYV +TRA  Q+ +
Sbjct: 622 RESIVEDVLLPQPEDFPDA----EERRLLYVALTRAKHQVWL 659


>gi|167951329|ref|ZP_02538403.1| ATP-dependent DNA helicase Rep [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 114

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            L +    +          I H+L+DE QDT+L Q+E+++ L                  
Sbjct: 2   QLFRDHPEA---LEAWQNRIRHLLVDEYQDTNLAQYELVKQLVGLRAS----------FT 48

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
            VGD+ QSIY++ GA P+ ++R ++              +I+L  ++RS+  IL  
Sbjct: 49  VVGDDDQSIYAWRGARPENLVRLQQDFP--------GLRLIKLEQNYRSSGRILRA 96


>gi|146282314|ref|YP_001172467.1| helicase [Pseudomonas stutzeri A1501]
 gi|145570519|gb|ABP79625.1| probable helicase [Pseudomonas stutzeri A1501]
          Length = 665

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/454 (11%), Positives = 127/454 (27%), Gaps = 39/454 (8%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  +  +    +    P  Q   + K          P   ++   L           +  
Sbjct: 239 AAGDEPDNPLANARLRPAQQR--LLKQAYQRCYAEQPDFREQVHRLLDLPGPAVEPAKGR 296

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
             +     + F+         + +        ++       +++         +     +
Sbjct: 297 RAAPKAPEKPFSLAGEFAALPLYEAFHVQAGFIESIGLRIDRLQPSGLECTSRERQ--FI 354

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                 +  ++   ++  +  F         L ++   +  +         H+LIDE QD
Sbjct: 355 EALIAFHGCFQAVLREQGLQTFN---AAFQQLGERLTAADGVPPASLAPFQHLLIDEFQD 411

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            S    + +++L            S  +L A+GD+ QSIY + G+ P+  +   R   +R
Sbjct: 412 ISPQIVKWLQALHRQL----ARQGSSPSLMAIGDDWQSIYGWRGSSPELFMEFDRHFPRR 467

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +    + L  ++RS   ++   + V +     Q  +         R +R  Q G 
Sbjct: 468 GA---KGSETLLLETNYRSIEPVIRDGEAVLAGVRFKQAKTS--------RPNRPMQPGD 516

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             +      + +           +    + +  S    A  +    ++ +       + K
Sbjct: 517 HGVRLVTGFELNGGLAQLVAEIKAQCAHVVERGSRERTAVLLLGRRNDTLRAIQAELDRK 576

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
             V                     + R      ++++V +D      H     L A   F
Sbjct: 577 LPVKAY-----------------TIHRAKGLQAEVAIVVDDCLPPQPHPLRNALYAYCGF 619

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             +  D       L+      +      +   R 
Sbjct: 620 FRNSYDQAMADESLRLAYVAITRGVSRVLWYTRK 653


>gi|218289571|ref|ZP_03493791.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240221|gb|EED07404.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1]
          Length = 405

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/210 (21%), Positives = 73/210 (34%), Gaps = 21/210 (10%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
           E       ++     +         K +   Y   K+     D +D+++ +  LL+ R  
Sbjct: 70  ELQSYLTLYSRVVGRQKKDELDAKGKKILEDYVRRKRALNRWDHDDILLASLQLLQSRSA 129

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
           S    ++++    +IL+DE QDT+ +QW ++ SL E               F VGD+ QS
Sbjct: 130 SKIRLFQMN----YILVDEFQDTNELQWALLTSLVERNSALA---------FVVGDDDQS 176

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY+F GA P  + R      K             L L+FRS   IL    ++    +   
Sbjct: 177 IYAFRGASPVYLQRAVEALPK--------ARQYLLTLNFRSDQRILHHAAQLIRHVKVRV 228

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
                                    W  V 
Sbjct: 229 DKPLRGVHDAEGICLAYEVRDRAAQWVVVA 258


>gi|205352230|ref|YP_002226031.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205272011|emb|CAR36855.1| helicase IV (75 kD helicase) [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627275|gb|EGE33618.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 684

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 389 IKLMAPLLKAWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +S  TLFAVGD+ Q+IY F GA+        +    
Sbjct: 441 DISPQRAALLEALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +     L  ++R  + I  + ++      +      +S T    ++
Sbjct: 491 ------GEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 63/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++  +          
Sbjct: 603 DYVILVGLQEGN------------------DGFPAPARESIMESALLPQVEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735]
 gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735]
          Length = 906

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 102/335 (30%), Gaps = 72/335 (21%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   YE  K  N ++DFED+++ +                       I +DEVQD + +
Sbjct: 220 QLAHQYERYKSDNRLMDFEDILLLSYA-----------HRDQLPRYRWIQVDEVQDLNPL 268

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  +I +LT +    +        +  +GD +QSI+SF GA+   +   +          
Sbjct: 269 QLALIDALTANDEGQEG------CVVYLGDPQQSIFSFMGAKYSTLEFLRNR-------- 314

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I  L  + RS   +L + +                        +      + +L 
Sbjct: 315 -CAGHIHSLGQNHRSPKYLLDLFNT----------------------YAAKELSISAELL 351

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                   +  N  Q   +   D+   +++   +                      +R  
Sbjct: 352 PSTAYHPATIGNELQLFQSDTIDTEYLDAAQQAV--------------------RLQRDF 391

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
                 ++V   +D   ++   + L+  +           L     IK L A    + + 
Sbjct: 392 PGDTTAIIVNSNRDADGVSDALKQLRTSH----FKVSGEDLFTSPQIKLLFAHLTVMNNA 447

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
            + +++  +L+      +     +      +   +
Sbjct: 448 HNFIAWARVLQGMQVFRTPTAARRFVRACSDRALL 482



 Score = 43.8 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 55/389 (14%), Positives = 115/389 (29%), Gaps = 61/389 (15%)

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTV--QLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +  +   G     +    H  S       +   +   +  + +    P++E+   + D 
Sbjct: 527 IAAVKVRNGAVVPGSALSLHLESDHEIPEMLGDIVNPIIEERRNQTLLPRREALQRFVDY 586

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                     A    + ++N +  +   +     +    D L L+R      L+    R 
Sbjct: 587 ARGTVLLGHNADYDIHILANNLQREMPETALPNELSDYFDSLHLIR------LLRPGLRQ 640

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            K  Y + V+  +      HLA  D+ A    ++   D  +   + +   F   +    +
Sbjct: 641 YKLKYLLEVLHLEGEN--SHLADADVNATQSLVVFCYD-KAKEIVGEQQAFIRHKRVQER 697

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           I T R+     Y +  +       K   +++ +  L          +     L       
Sbjct: 698 IMTLRNNYLPHYRHTVEQLWKEDEKSGVLVEEMRHL----YATWVEENLIQPLPTVDYIF 753

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
           +++        D+L E  +  L         +   I E+           +   +++ + 
Sbjct: 754 RYV------ASDLLRENESTAL------VMQIGRHILEMNTLKEADLCGSTTIDDKIFVT 801

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
           TVH AKGLE   V + D     + +                                   
Sbjct: 802 TVHKAKGLEFDNVIVFDVIEGRYPN----------------------------------Y 827

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                 +   E  R  YV MTR+  +L++
Sbjct: 828 YSQQNPAQVAEDARKFYVAMTRSKKRLMV 856


>gi|90019844|ref|YP_525671.1| UvrD/REP helicase family protein [Saccharophagus degradans 2-40]
 gi|89949444|gb|ABD79459.1| UvrD/REP helicase [Saccharophagus degradans 2-40]
          Length = 614

 Score = 94.2 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 68/528 (12%), Positives = 147/528 (27%), Gaps = 135/528 (25%)

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            L F+ +I    + L + +    I++ +      + +DE QDT+  Q+E+++ +  +   
Sbjct: 185 ALSFQ-MINRLIEYLIRSN--PNIKHALRSTYPFVFLDEFQDTTSPQYELLKFIFLESNS 241

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                     + AVGD+KQ I  + GA P+      +                +L  ++R
Sbjct: 242 ---------LITAVGDDKQQIMGWAGALPEAFNVFNQDFG---------AKNFDLVSNWR 283

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           S  ++++                      ++H  +++   G  Q   +            
Sbjct: 284 SHPELVS----------------------MQHAIAQMITPGLTQPEAKNTKNMKGD-VAA 320

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
              ++   D +          + ++  IS  I + T          +A ++ +LVR   D
Sbjct: 321 IWGYSDRNDEI----------QGVSNWISEQINSGT----------KAHELAILVRTHAD 360

Query: 386 TPLITFLTRFLKNDYKISVVGNDR-------FILTDHLAIKDLMALGRFILSQEDDLSFV 438
              +         +  IS+    R         +        ++      + +    ++ 
Sbjct: 361 --KLEVEIAPHLLNKGISIRNVARIVDGIAIQDILTEKLTTIILPFLYLGVLERSPENWN 418

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
             L S L      D         + + +  + +       +         H+        
Sbjct: 419 RALIS-LCALEGVDFVDERAHSQQQDRLQYFSRLLRQDLSN------GNFHKGRINPTIS 471

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
           S   F T         +    R  N V++ +   L        +   +L           
Sbjct: 472 SILAFLTEDAIRSSISEYKQDRDYNRVLNGIVSLLEECADCSSSWLEALDRF-------- 523

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                      ++V +MT+H +KGLE   +      ++ +                    
Sbjct: 524 --------QGVDQVPLMTIHKSKGLEFQTIIFFGLDAKTWWSLTPDNP------------ 563

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                      E  R  +V  TRA        
Sbjct: 564 ---------------------------EELRSFFVAFTRAKQSTFFTS 584


>gi|152987976|ref|YP_001349289.1| putative helicase [Pseudomonas aeruginosa PA7]
 gi|150963134|gb|ABR85159.1| probable helicase [Pseudomonas aeruginosa PA7]
          Length = 649

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/364 (11%), Positives = 104/364 (28%), Gaps = 15/364 (4%)

Query: 10  NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL 69
           ++       D             + +  + +              +        E     
Sbjct: 221 DDRDPAAEPDNPLTAGRLRPAQQRLLKQAYQRCYADSPAFRAKTHKLLDLPPPAEVEEGA 280

Query: 70  SSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
                     P +         + +         +       ++        + +     
Sbjct: 281 RRRPPKAPLEPFRLAGEFQALPLYEAFHAQAGFAESLGLRIDRLDSGGLECGVREKI--F 338

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           +       A ++   ++  ++ F+         L +R  +  +         H+LIDE Q
Sbjct: 339 VEALALFWASFQALLREQGLMTFD----AAFQQLGERLAAGSLPDAALAPFGHLLIDEFQ 394

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S      +++L            +P +L A+GD+ QSIY + G+ P+  +   R    
Sbjct: 395 DVSPQIVLWLQALHRCLAT----RGTPPSLMAIGDDWQSIYGWRGSSPELFIDFDRHFPS 450

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           R    G+K +++ L  ++RS   I+   + V +     Q  +  +   I+     +  V 
Sbjct: 451 R--GRGRKSALLVLETNYRSVEPIIRDGEAVLAGVRFKQDKTCRAFRAIQPGDHGVKLVQ 508

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
              L  Q+           + + +   +        S     +   ++ +     +    
Sbjct: 509 RFDLRAQLPKLLAEVRGQCEYAASRNSNERTAVLLLSRRNEPLQAILAELDRALPVKGMT 568

Query: 367 KKRV 370
             R 
Sbjct: 569 IHRA 572


>gi|261403870|ref|YP_003248093.1| UvrD/REP helicase [Methanocaldococcus vulcanius M7]
 gi|261370863|gb|ACX73611.1| UvrD/REP helicase [Methanocaldococcus vulcanius M7]
          Length = 591

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 79/550 (14%), Positives = 158/550 (28%), Gaps = 155/550 (28%)

Query: 121 KSTLASLTLAKYLNA---HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
               A   LA  L      +EE KK   +LD+ D++I   + LK  ++            
Sbjct: 181 ARYEALKRLAPKLWKFPPLWEEYKKGKGILDYNDMLIRAYEGLKSGEIDPRNLPGHKYSP 240

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             +++DE QD S +Q+E+ R L                +   GD+ Q+I+S+ GA+P+ +
Sbjct: 241 KVLIVDEFQDLSPLQFEIFRLLANHMD----------LVIIAGDDDQTIFSYQGADPRLM 290

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                               + L  S R    +      V S   + +  +         
Sbjct: 291 NYV-------------PGLEVVLRKSHRLPIVVQAKALTVISKTRHRKEKT--------- 328

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM- 356
                           V  + D      +  W   F +     +    +  I    +   
Sbjct: 329 ----------------VAPRTDLGDFKYKLFWFPDFLNDLVREAQEGHSIFILVRTNRQV 372

Query: 357 --IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
             +G + I +      ++     +     K+      L + L    K            +
Sbjct: 373 LKLGKELILAGVHFEHLKVDYRSIWEAGSKEWGTFRDLVQALLKAKK-----------GE 421

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
            L + DL+ +  +                            I     E  +  E  +K A
Sbjct: 422 ELEVADLVTILYYS-------------------------ELIDWHLGERISEKERYKKIA 456

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                  + + K +     +    +P           +  +    R G   ++++ E + 
Sbjct: 457 EQMEKTIEAIEKGLMPFDILKVKENPFSVL-----DLEKIESLSPRHGKIAVELIKELMK 511

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E++   S+                        + + T+H +KG E+ VVFL++  
Sbjct: 512 -----EKSQVVSI-------------------PKDARIYLDTLHASKGREADVVFLINDL 547

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            + +S                                         +   +   R+ YVG
Sbjct: 548 PRKWSS------------------------------------ILKTREELDAERRVWYVG 571

Query: 655 MTRASDQLII 664
           +TRA  ++ +
Sbjct: 572 LTRARKKVYL 581


>gi|225075586|ref|ZP_03718785.1| hypothetical protein NEIFLAOT_00600 [Neisseria flavescens
           NRL30031/H210]
 gi|224953008|gb|EEG34217.1| hypothetical protein NEIFLAOT_00600 [Neisseria flavescens
           NRL30031/H210]
          Length = 172

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 19/120 (15%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
              +    +           LIDE QDT  +Q+E+ R +  +             LF VG
Sbjct: 2   TTNEHGNALAKAAAANWEIALIDEFQDTDPLQYEIFRQIFIE---------QGCPLFLVG 52

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D KQ+IYSF GA+    L+  +                 L +++RS A ++  +  +F  
Sbjct: 53  DPKQAIYSFRGADIYAYLQAAQD----------ADRHYTLAVNYRSHAKLINGISALFKQ 102


>gi|56750403|ref|YP_171104.1| hypothetical protein syc0394_c [Synechococcus elongatus PCC 6301]
 gi|56685362|dbj|BAD78584.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 865

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 68/648 (10%), Positives = 169/648 (26%), Gaps = 48/648 (7%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY---TISNMIGT 359
              G++ +              Q  +W      L + S    L + IA     I+  I  
Sbjct: 164 AGEGSILVLPYTELLQQQHQLEQLAAWGWQI-KLEERSPEPWLQQWIAPNPPKIAEPIAH 222

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDT---------PLITFLTRFLKNDYKISVVGNDRF 410
                  + R +      +L +    +              L + +  +Y +        
Sbjct: 223 SYRDREQEVRSVLGHVKQLLQQNVAQSDIALLAADDRAYGPLVQQIGWEYGLPTRMLYEI 282

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEY 469
            +++    + L  L   I +  D  S + +          +    ++   R +    ++ 
Sbjct: 283 AISETRLGRWLEDLLTAIAADFDYPSGIRVFSPSFCAALPDGRQRQLRRDRPQNLAAWQT 342

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                           +++ +L    Q                   +   +        L
Sbjct: 343 SLATEFSPWPLAATRTEWVGQLRQWLQQLGLRQGLRRWPQDLVALNRLQQQLK-----NL 397

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            E          +   + Q+   E EQ     +         V++       G +   VF
Sbjct: 398 AE--------PASETLTRQQWCQEFEQLIRISRTPVQPGRGGVQLDRPEQIVGAQIGHVF 449

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +     V+         I  S        + +P   + + +    ++ +      +  +
Sbjct: 450 YLGLNEGVWPAPLASSSLIDYSD-RRQLQRLGLPLPTAASLVQQAKVQWIGALAATQTAQ 508

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             +V      +QL    +      +               +    + +  L +  +    
Sbjct: 509 FSWVRQHDNREQL-PSAYLEQMGLRSQITPAADSPHSPEEYRRRLLAQSTLVDDGDPIAH 567

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
            A + S         E      QL D   IP +  S              +         
Sbjct: 568 SAQQRSQQVQARLQGE-AVWNGQLADSISIPTRPLSVTGIIQLGQCPYRWAASKLLNLQT 626

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR-----------KNFITSYCTKNAKLWPA 818
                 D      G ++HK L+++    + +            +        +  +    
Sbjct: 627 DSERSDDPDAAMTGTLLHKALELLTPQLKTETLPDREILLAIVETAAAHLAKQRPREGDL 686

Query: 819 KEYKNLLLSITRLLENPMMTTAMSCDSYSE----VSVSGKINCPKKDIIISGRIDQISIS 874
           +++          +  P      S +  S     ++V        + + + G ID+I  +
Sbjct: 687 RQHPRWTAFQLSYVNLPE-RLLRSPNFRSPDSEIIAVEQSFEGQWQGLPVRGTIDRIDRT 745

Query: 875 QQNIFIFEYKTHHHVPQEIE-HIPYTHIAQLSIYEKI-LKDSYPNKSL 920
              + + +YK      +  +         QL++Y+++      P++ +
Sbjct: 746 SAGLELIDYKLGSTTQKVWDTDQKLKLDLQLALYQEVGAAAIAPDQPV 793


>gi|78043948|ref|YP_361000.1| exonuclease RexB [Carboxydothermus hydrogenoformans Z-2901]
 gi|123575607|sp|Q3AA34|ADDB_CARHZ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|77996063|gb|ABB14962.1| exonuclease RexB [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1090

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 78/668 (11%), Positives = 178/668 (26%), Gaps = 103/668 (15%)

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               I    K +  +  DILVL+    +        + + N+Y + V  +          
Sbjct: 302 AARIIRYLAKFKGYKLSDILVLIP---EDGYYISNIKTVFNEYGLPVYVDKGLAF----D 354

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------RHETETVYEYIQ 471
              L  L + +L + +  + +  LKS L N + D++F +           E   + E  +
Sbjct: 355 HHGLYFLLKGVLGEFNREAAINCLKSGLLNLTADEVFALENYLLSRGLDGEKLVLKEAWE 414

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDF----FTLILGAKKGRQQFISRFGNEVID 527
              +     ++     I     I    + +         +L      ++     G     
Sbjct: 415 DPNSSYWESWEKGFGEIISFSQILPLINTYREFSQSLKQLLLKIGVPRRISDENGERFWQ 474

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESP 586
                L            +      EL  Y   +         ++VR          E+ 
Sbjct: 475 AFTNLLTEIEEVFGAERLNPTTFAEELLAYLAKLSLKTIPKGLDQVRAGGSKRYWTGEAR 534

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V ++      F       +                   K    +   + + LK+     
Sbjct: 535 AVIILGAVEGKFPSPPAAGLIFTEEE--------RAKLKKVGLELSPLIRQRLKEDNFH- 585

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK----IKLTN 702
               +++ +TRA +++ +     +   +        D +  +F N +  +          
Sbjct: 586 ----VFLALTRARERVYVSYPRVSLTGESFTPALLVDWLKKAFPNLKSEEGSYGNETTPQ 641

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN---------- 752
           ++ +           + E   + +      L+ + ++  K+      +            
Sbjct: 642 ALTRLLSREMVKVKKNGELPFIAQGAFNALLLSKPELITKIARAFATNPGKIKLNAGFKE 701

Query: 753 --EPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLL--------- 790
                 L+ S ++T     L           E  +   +    G ++H  +         
Sbjct: 702 FLPSKTLSVSRLETYYSCPLKYFLKYLIKAEEREIFTPEATEIGALLHGAVAEIIKTVRE 761

Query: 791 --QVIFTLPEHKRKNFI------------TSYCTKNAKLWPAKEYKNLLLSITRLLE--- 833
             Q + TL     K  +              +       +       +L      L    
Sbjct: 762 KGQKLSTLLAEDLKTLVYQAFTKAQQEYGEKFLATYRGRYFLNRLYLMLFKAIEALAYFE 821

Query: 834 -----NPMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN----IFIFEY 883
                 P             +  V        +   ++G+ID+I + + N    + I +Y
Sbjct: 822 GFTKFTPFGEEIAFGEKERLKSPV---FEVNGEKYTLAGKIDRIDVYENNGKTYLRIIDY 878

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCLLIYVS--EPKVFIIPQN 938
           KT       ++ +      QL  Y  +    K+ +    +     Y     P +    + 
Sbjct: 879 KTGSISI-SLDEVVGGINLQLLTYLLVASENKELFGENLVPAGAFYFRFQNPMLDEKAEG 937

Query: 939 KLNKAFAE 946
              +   E
Sbjct: 938 LSMEELKE 945


>gi|315655323|ref|ZP_07908223.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii ATCC
           51333]
 gi|315656764|ref|ZP_07909651.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315490263|gb|EFU79888.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii ATCC
           51333]
 gi|315492719|gb|EFU82323.1| exodeoxyribonuclease V beta subunit [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 285

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 67/213 (31%), Gaps = 33/213 (15%)

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIF 794
           +          P  L+ S+     +  L+             +    RG ++HK+L+ +F
Sbjct: 1   MSESSSAPAPRPPALSASSAKQFQQCPLKWRFKYVDKLPEPQSPAALRGSLVHKVLEDMF 60

Query: 795 TLPEHK------RKNFITSY---------CTKNAKLWPAKEYKNLLLS-ITRLLENPMMT 838
            LP  +      R+    ++          ++       +E K      I          
Sbjct: 61  DLPPAERQAPTVRETVDRAWEKVTDGAYKLSEVLAQTSEQELKAAARQLIDAYFSLEDPR 120

Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIP 897
                    E+ V   ++     + + G ID++  +    + I +YKT            
Sbjct: 121 RLHPSG--RELGVETVLSS---GLRLRGFIDRVEQAGNGDVRIIDYKTGKAPD---MRFT 172

Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
             ++ Q+ +Y  + ++ Y        L+++   
Sbjct: 173 GEYVFQMRLYALLYREQYRVTPKRTQLLFLGGN 205


>gi|224007759|ref|XP_002292839.1| hypothetical protein THAPSDRAFT_263669 [Thalassiosira pseudonana
           CCMP1335]
 gi|220971701|gb|EED90035.1| hypothetical protein THAPSDRAFT_263669 [Thalassiosira pseudonana
           CCMP1335]
          Length = 259

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 21/128 (16%)

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           D  DL      LL     +  +   +  ++ HI++DE QD S+ Q  ++R +        
Sbjct: 1   DPADLSSIAYRLLMTNPNALHV---LRSKMKHIIVDEYQDMSVSQHSLLRLIRSYSV--- 54

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRS 266
                   LF  GD  QSIY + GA P   +   +R   +          +  L  ++R 
Sbjct: 55  ------PNLFCAGDTSQSIYGWRGAAPSLTVDGFRRDYPQGI--------VAPLDTNYRL 100

Query: 267 TADILTVV 274
            +DIL   
Sbjct: 101 PSDILEAA 108


>gi|253990217|ref|YP_003041573.1| DNA helicase IV [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253781667|emb|CAQ84830.1| dna helicase iv [Photorhabdus asymbiotica]
          Length = 684

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++   K  C +D+  LI    ++L+K         +      HIL+DE Q
Sbjct: 389 IRLMGPLLKAWKSELKSECAVDYSGLIHQAINVLEK--------GRFISPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S ++ +++ +L         T +S   LFAVGD+ Q+IY F GAE            +
Sbjct: 441 DISPLKAKLLIALR--------TQNSQSCLFAVGDDWQAIYRFRGAESVLTAAFADYFGE 492

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
           RA           L  S+R    I  + +       N      +S T    +S
Sbjct: 493 RAE--------CVLDTSYRFNDRIGKIANTFVQQNPNQLNKPLNSLTKGNKKS 537



 Score = 38.7 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 29/218 (13%)

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPHDFFTL 506
           DD   I   R     +      +                  I ++ +     +P+     
Sbjct: 467 DDWQAIYRFRGAESVLTAAFADYFGERAECVLDTSYRFNDRIGKIANTFVQQNPNQLNKP 526

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           +    KG ++ +     E ++     LN          + L        +     K    
Sbjct: 527 LNSLTKGNKKSVVILPEEQLEP---LLNKMSGYVTEQETVLLLARYHHLKPELLKKAMTR 583

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
               ++  MT+H +KG ++  V +              +  +M                 
Sbjct: 584 WPKLKIEFMTIHASKGQQADYVIIFGLHQGNDGFPAPARESVME---------------- 627

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                   L+  L+     E  RLLYV +TRA  Q+ +
Sbjct: 628 ------RVLLPQLENFPDAEERRLLYVALTRAKKQVWL 659


>gi|239932266|ref|ZP_04689219.1| hypothetical protein SghaA1_28841 [Streptomyces ghanaensis ATCC
           14672]
          Length = 317

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 66/230 (28%), Gaps = 35/230 (15%)

Query: 749 NDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                P  L+PS      +  L              ++   RG ++H +L+ +F  P  +
Sbjct: 33  APAVPPASLSPSRASDFMQCPLLYRFRVIDRLPEKPSEAATRGTLVHSVLERLFDAPAAE 92

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-------------- 846
           R                 +    +        E   +   ++                  
Sbjct: 93  RTAPRAKALVPGQWERLRESRPEVAELFADDPEGERLARWLAEAERLVERWFTLEDPSRL 152

Query: 847 ----SEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI 901
                E+ V  +++     + + G ID++ ++    + I +YKT               +
Sbjct: 153 EPAERELFVEAELDS---GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP---EYAEGAL 206

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            Q+  Y  ++            L+Y+    V  +  + +      +  K+
Sbjct: 207 FQMKFYALVVWRLKKVVPRRLQLVYLGSGDV--LTYDPVPADLERVERKL 254


>gi|84496467|ref|ZP_00995321.1| hypothetical protein JNB_03070 [Janibacter sp. HTCC2649]
 gi|84383235|gb|EAP99116.1| hypothetical protein JNB_03070 [Janibacter sp. HTCC2649]
          Length = 281

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 65/208 (31%), Gaps = 25/208 (12%)

Query: 754 PYILNPSTIDTKGKTNLESLL--------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
              L+PS      +  L              +    RG ++H++L+ +F LP  +R    
Sbjct: 2   TPALSPSRAADFKQCPLLFRFRTIDKLDGPPSPAAARGTLVHEVLEHLFELPAAERTPEA 61

Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK----------- 854
                +       +E   L   I             +  +  E   + +           
Sbjct: 62  ALALLQPRWASLVEERPELATMIEDDETLTEDGWFTAAGALVERWFTLENPQWLEPAERE 121

Query: 855 --INCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
             +      + + G +D++ I+    + + +YKT     +  E      + Q+  Y  +L
Sbjct: 122 LYVETEVDGLTLRGYVDRLDIAPDGSMRVVDYKTGRSPREAFEGKA---LFQMKFYALVL 178

Query: 912 KDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
                    +  L+Y+   ++     ++
Sbjct: 179 WRQRGVIPKLLQLVYLGNGEIVRYEPDE 206


>gi|307267169|ref|ZP_07548677.1| ATP-dependent nuclease subunit B [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917820|gb|EFN48086.1| ATP-dependent nuclease subunit B [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 1153

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 78/754 (10%), Positives = 193/754 (25%), Gaps = 153/754 (20%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           ++      +          I  R     ++  ++               +  S     + 
Sbjct: 257 EICQRNNISYEKPVYLNGEIPERFRESEELSFIEKHLFSYPYKVYLKETEDISIFKAVNV 316

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +           A  I  ++  +           +  DI+V  R   D      L + 
Sbjct: 317 YSEVEET-------ARDIIRLVRDE---------GFRYSDIVVATR---DLNRYHKLIKA 357

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
           + + Y I    + +  + ++  I  + +L    L +    S    LK+   +  ++DI  
Sbjct: 358 IFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWSYESVFRYLKTGFTDLEKEDINL 417

Query: 456 ICTQRHETETVYEYIQKFANCGI-----------------------------SKFQHVIK 486
           I           +  ++                                   +  Q   K
Sbjct: 418 IENYVLANGIKGDKWKEEVWNYRLNYRFDRLSIEEDEKEIIERVNEIKRKIATSLQDFYK 477

Query: 487 YIHE----------LIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
              +          L               ++   K  +++  +    +V D++ + L+ 
Sbjct: 478 KFSKSKNIKEACGTLYDFLVEMKLPQKIEKLIEKFKEEKEYDTANQYAQVWDIVVDVLDQ 537

Query: 536 TLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +        ++++    L          +     +EV + +V   K   +  ++++   
Sbjct: 538 LVEVMGEEKVTVEQFAKILSIGFDEYQIGSIPPALDEVLVTSVDRMKSHNAKALYIIGVN 597

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F     ++  +     +            ++  I              E   L+Y  
Sbjct: 598 DGIFPAALFEEGILTDGDREILASHNVELDRDTKTKIF-------------EEQFLVYTA 644

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +T  S  L I         K          +   F   ++   +   ++  ++       
Sbjct: 645 LTSTSKFLRISYPIADHEGKSLRPSIIISRLKKIFPKIKQFSNVVEMDTAEENLNRVSTP 704

Query: 715 STHHPE--NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--------------- 757
           S    E  +   + + T K       + K               L               
Sbjct: 705 SPTFNEMVSAVKKWDITNKMHPLWLDVYKWYAKSESWKPKLTRALEGLYYTNQVEKVPAH 764

Query: 758 ------------NPSTIDTKGKTNLESLLS-DNQTFNR----------GLIIHKLLQVIF 794
                       + S ++          +    +   R          G  +H +L    
Sbjct: 765 KVKKLYGDEMYFSVSRLEKYAACPFAYFVQYGLKAKERKIFSFEPPDLGTFMHNVLDRFS 824

Query: 795 TLPEHK---RKNFITSYCTKNAKLWPAKEYKN--------------LLLSITRLLENPMM 837
              E +    ++    +C +   +      +               L   + R+L N + 
Sbjct: 825 KALEEEGLTWQDIDREWCDEAVAIIVDDMIQKIPGYILNSSPRYKYLAERLKRVLSNAV- 883

Query: 838 TTAMSCDSYS--------EVSV--------SGKINCPKKDIIISGRIDQI--SISQQNIF 879
              +S             EV+            +    ++I + GRID++     +   +
Sbjct: 884 -WVVSEHIKRSSFVPLDHEVAFGDNQKYPPIKIVLSNGEEINLIGRIDRVDIFEKEDEAY 942

Query: 880 I--FEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           I   +YK+  +   ++  + Y    QL IY   +
Sbjct: 943 IRIIDYKSG-NKTLDLSDVFYGLELQLLIYLDAI 975


>gi|304383117|ref|ZP_07365592.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
 gi|304335803|gb|EFM02058.1| possible DNA polymerase III, epsilon subunit [Prevotella marshii
           DSM 16973]
          Length = 889

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/379 (15%), Positives = 118/379 (31%), Gaps = 70/379 (18%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
                    L       K +       + P  +  +    +         + +   +   
Sbjct: 148 AADHPRDLLLHADSVDFKALRAVCTELRMPYSRSSILDIYEHIDDYYPSSDLHLTLEMQQ 207

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
               +      HYE+ K+ N +LDFEDL++ T D +K    +        +    I IDE
Sbjct: 208 LLQMMYAA--RHYEQYKRANSMLDFEDLLLFTYDAVKDELPADC------RTYTWIQIDE 259

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           VQD + +Q  +I   T          S   ++  +GDE+Q+I+SF GA+ + +   K   
Sbjct: 260 VQDLNPLQLAIIDRFT--------NRSGAFSVLYLGDEQQAIFSFMGAKKETLNLLKER- 310

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                   +  +I  L +++RS   +L V +   +               +   + R   
Sbjct: 311 -------CRPEAIHTLGVNYRSPKYLLDVFNDFGAQ-------VLGIDRRLLPVTDRDEP 356

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
                L          +                           +A  +  + G      
Sbjct: 357 HAPADLAILKAQTQADEYVE------------------------VAALVQTLFGQS---- 388

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                  + +   V+V   ++        R   ND  +         L D   +K L A 
Sbjct: 389 -------ECETTAVIVSSNREAD--EMSLR--LNDIGVPHFKVSGRDLFDLPEVKLLFAH 437

Query: 425 GRFILSQEDDLSFVCMLKS 443
              ++ + + +++  +LK 
Sbjct: 438 FTVLVDEHNLMAWSRILKG 456



 Score = 46.5 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 108/362 (29%), Gaps = 63/362 (17%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +      +C   +E++  + D +  ++          + +   +         + + +
Sbjct: 559 PIIEEMKHHECLSPEEAFAQFMDYVADDAVLGHNVEYDFHILLYNLLRHAPQWVERWKAV 618

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +  D L L+R        ++  + L                T+     D +   + +   
Sbjct: 619 ERFDSLKLIRLL-HPRQKSYKLKHLLERLG--------LEGTNSHLADDDIMATKSLADY 669

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
               +  C+ +   F  +   + +     +     + + + +       F   ++Y+++ 
Sbjct: 670 CYRHAVACVDEQQRFIDAHRPMVEKFRHVYADLFFHSFHRLYVRHERQAFTAELRYVYDT 729

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
           +   +  +P +    I+                  D LDE  N    +E      L   I
Sbjct: 730 LVETRHIAPVEKLHYIV------------------DYLDE--NVMGVDEDTLIQQLHNHI 769

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            ++  Y  T      +    V + TVH AKGLE   V ++      +             
Sbjct: 770 RDINSYRETDLCGSKSIQERVFVSTVHKAKGLEFDNVVVLGVTDDRYPRFSSTN------ 823

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                        + +  E    LYV ++RA  +L +  +++++
Sbjct: 824 ----------------------------HRESLFEDACRLYVALSRARRRLFVSTYASST 855

Query: 672 NE 673
           N 
Sbjct: 856 NR 857


>gi|226322869|ref|ZP_03798387.1| hypothetical protein COPCOM_00641 [Coprococcus comes ATCC 27758]
 gi|225208655|gb|EEG91009.1| hypothetical protein COPCOM_00641 [Coprococcus comes ATCC 27758]
          Length = 480

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 90/301 (29%), Gaps = 78/301 (25%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASL-TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
           Q+   K  +          T          +    E+AK++   + F DL+     + K+
Sbjct: 34  QNRLKKRMEEDYAAYRKGRTQGKYKDDLFRVFPLLEKAKRQQNKMSFADLLEEGTQVAKE 93

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
           ++    +          I++DEVQD+   Q + + +L            +    FAVGD 
Sbjct: 94  QEEVLDL--------KWIIVDEVQDSDEKQLKFLEAL----------KGTQTHFFAVGDP 135

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q IYS+ G  P      K                + LP+++RS   IL   ++      
Sbjct: 136 NQVIYSWRGTGPNMFFLIKHRFG---------AKELTLPVNYRSDEVILEAANRF----- 181

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                                        +       S    ++    +++D   +    
Sbjct: 182 ----------------------------LQFGGKIEGSGERGEKILVRNHYDPFIE---- 209

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  +   I  +              +  ++I V  R +K   ++  +    +  Y +
Sbjct: 210 ---AEYLTERIRELHEQG----------LPYREIAVFYRVQKQAEILEKVFERAELPYVL 256

Query: 403 S 403
            
Sbjct: 257 P 257



 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 65/222 (29%), Gaps = 42/222 (18%)

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF---ISRFGNEVIDVLDEFLNF 535
            + + + +       IA F         IL     R +    +     E  D + E  + 
Sbjct: 215 ERIRELHEQGLPYREIAVFYRVQKQAE-ILEKVFERAELPYVLPTKQKEDEDPVPERPHM 273

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
                     +       +E+   T     +   + V +MT+H +KGLE   VF++    
Sbjct: 274 IREYVAEGKLNAVSGEHTMEKAADTE--RQTEEEDAVHLMTLHASKGLEFDYVFIIGMNQ 331

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +                                      ++      +EE  RL +VG+
Sbjct: 332 GLIP------------------------------------LRCKSIEQEEEERRLFFVGL 355

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           TRA   L +  ++N +        + Y  +      D   K 
Sbjct: 356 TRARKNLELSYYTNPTIPGTYETPSNYLRMLPEELLDWEEKP 397


>gi|37525714|ref|NP_929058.1| DNA helicase IV [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785143|emb|CAE14072.1| DNA helicase IV [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 684

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 61/180 (33%), Gaps = 24/180 (13%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
                  + L + L   ++   K    +D+  LI    ++L K         +      H
Sbjct: 382 LDRFQKCIRLMEPLLKAWKSELKTEGAVDYSGLIHQAVNILDK--------GRFISPWKH 433

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           IL+DE QD S         L         T +S   LFAVGD+ Q+IY F GAE      
Sbjct: 434 ILVDEFQDISP--------LWAKLLTAMRTQNSQSCLFAVGDDWQAIYRFSGAERMLTSA 485

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                 K A           L +S+R    I  + +       N    S +  T    +S
Sbjct: 486 FANYFGKGAE--------CVLDISYRLNDRISKITNAFVQQNPNQLRKSLNGLTKGNKKS 537



 Score = 48.8 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/372 (15%), Positives = 113/372 (30%), Gaps = 41/372 (11%)

Query: 311 WEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           W+Q  S+  +Q    +E  T          +      LA R++  +   +G   +    +
Sbjct: 311 WQQQCSEKKAQAKGWREWLTDELKWEVPEGEFWHDEQLANRLSNRLECWLGLMRMHGGSQ 370

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD----LMA 423
           K +I+      L R +K   L+  L +  K++ K     +   ++   + I D    +  
Sbjct: 371 KAMIEQVQEEYLDRFQKCIRLMEPLLKAWKSELKTEGAVDYSGLIHQAVNILDKGRFISP 430

Query: 424 LGRFILSQEDDLSFVCM----------LKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
               ++ +  D+S +             +S LF    DD   I         +      +
Sbjct: 431 WKHILVDEFQDISPLWAKLLTAMRTQNSQSCLFAVG-DDWQAIYRFSGAERMLTSAFANY 489

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-FISRFGNEVIDVLDEF 532
              G      +   +++ I              +  +  G  +           D L+  
Sbjct: 490 FGKGAECVLDISYRLNDRISKITNAFVQQNPNQLRKSLNGLTKGNKKSIVILPEDQLEPL 549

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           LN          + L        +     K A      ++  MT+H +KG ++  V ++ 
Sbjct: 550 LNKMSGYVTEQETILLLARYHYLKPELLKKAATRWPKLKIEFMTIHASKGQQADYVIILG 609

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                                   G P    +S     ++             E  RLLY
Sbjct: 610 LHQGQ------------------DGFPAPARESVMEWVLLPQPEDFSDA----EERRLLY 647

Query: 653 VGMTRASDQLII 664
           V +TRA  Q+ +
Sbjct: 648 VALTRAKKQVWL 659


>gi|326389379|ref|ZP_08210947.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus JW
           200]
 gi|325994742|gb|EGD53166.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus JW
           200]
          Length = 1153

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/754 (10%), Positives = 193/754 (25%), Gaps = 153/754 (20%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           ++      +     +    I  R     ++  ++               +  S     + 
Sbjct: 257 EICQRNNISYEKPVNLNIGIPQRFKESEELSFIEKHLFSYPYKVYLKETEDISIFKAVNV 316

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +           A  I  ++  +           +  DI+V  R   D      L + 
Sbjct: 317 YSEVEET-------ARDIIRLVRDE---------GFRYSDIVVATR---DLNRYHKLIKA 357

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
           + + Y I    + +  + ++  I  + +L    L +    S    LK+   +  ++DI  
Sbjct: 358 IFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWSYESVFRYLKTGFTDLEKEDINL 417

Query: 456 ICTQRHETETVYEYIQKFANCGI-----------------------------SKFQHVIK 486
           I           +  ++                                   +  Q   K
Sbjct: 418 IENYVLANGIKGDKWKEEVWNYRLNYRFDRLSIEEDEKEIIERVNEIKRKIATPLQDFYK 477

Query: 487 YIHE----------LIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
              +          L               ++   K  +++  +    +V D++ + L+ 
Sbjct: 478 KFSKSKNIKEACGTLYDFLVEMKLPQKIEKLIEKFKEEKEYDTANQYAQVWDIVVDVLDQ 537

Query: 536 TLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +        + ++    L          +     +EV + +V   K   +  ++++   
Sbjct: 538 LVEVMGEEKVTAEQFAKILSIGFDEYQIGSIPPALDEVLVTSVDRMKSHNAKALYIIGVN 597

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F     ++  +     +            ++  I              E   L+Y  
Sbjct: 598 DGIFPASLFEEGILTDGDREILASHNVELDRDTKTKIF-------------EEQFLVYTA 644

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +T  S  L I         K          +   F   ++   +   ++  ++       
Sbjct: 645 LTSTSKFLKISYPIADHEGKSMRPSIIISRLKKIFPKIKQFSNVVEMDTAEENLNRVSTP 704

Query: 715 STHHPE--NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--------------- 757
           S    E  +   + + T K       + K               L               
Sbjct: 705 SPTFNEMVSAVKKWDITNKMHPLWLDVYKWYAKSESWKPKLTRALEGLYYTNQVKKVPAH 764

Query: 758 ------------NPSTIDTKGKTNLESLLS-DNQTFNR----------GLIIHKLLQVIF 794
                       + S ++          +    +   R          G  +H +L    
Sbjct: 765 KVKKLYGDEMYFSVSRLEKYAACPFAYFVQYGLKAKERKIFSFEPPDLGTFMHNVLDRFS 824

Query: 795 TLPEHK---RKNFITSYCTKNAKLWPAKEYKN--------------LLLSITRLLENPMM 837
              E +    ++    +C +   +      +               L   + R+L N + 
Sbjct: 825 KALEEEGLTWQDIDREWCDEAVAIIVDDMIQKIPGYILNSSPRYKYLAERLKRVLSNAV- 883

Query: 838 TTAMSCDSYS--------EVSV--------SGKINCPKKDIIISGRIDQI--SISQQNIF 879
              +S             EV+            +    ++I + GRID++     +   +
Sbjct: 884 -WVVSEHIKRSSFVPLDHEVAFGDNQKYPPIKIVLSNGEEINLIGRIDRVDIFEKEDEAY 942

Query: 880 I--FEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           I   +YK+  +   ++  + Y    QL IY   +
Sbjct: 943 IRIIDYKSG-NKTLDLSDVFYGLELQLLIYLDAI 975


>gi|255282637|ref|ZP_05347192.1| ATP-dependent nuclease subunit B [Bryantella formatexigens DSM 14469]
 gi|255266930|gb|EET60135.1| ATP-dependent nuclease subunit B [Bryantella formatexigens DSM 14469]
          Length = 1162

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 84/749 (11%), Positives = 202/749 (26%), Gaps = 128/749 (17%)

Query: 297  HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA--SILARRIAYTIS 354
                       V+      ++  ++    +    S   ++   ++A     A   A TI 
Sbjct: 300  KAQWTEPAEEPVRSANPHTAEETARSGEAEPECASSGCAISLHTAANPVQEAHFAARTIR 359

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
             ++              + +DI V+V    D P  +     +  +YKI+   +    +  
Sbjct: 360  ALLRQG----------YRYQDIAVIV---GDLPSYSSYIPQVFGEYKIAYFMDSTRTVFS 406

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
            +  ++ L A+   I       S    L++ L       +  +         V     +  
Sbjct: 407  NPLVEFLRAVLDMIQQDFTCASVFRYLRTGLCRIDAQKLDMLEN------YVLAAGVRGF 460

Query: 475  NCGISKFQHVIKYI--------HELIHIAQFCSP----------------HDFFTLILGA 510
            +     F   + ++         EL  +                       +    +L  
Sbjct: 461  SRWREPFTRAVDFLDEEQLALCEELRSLIMEPLLPLVSCMRQARTTAREKTEGLHTLLCH 520

Query: 511  KKGRQQFISRFGNEVIDVLDEF--------------LNFTLRNEQNSYSSLQELISELEQ 556
               +QQ          D   E                +      +    +LQE    LE 
Sbjct: 521  YNIQQQLADMEKQFRADGQAELEKEFAGIYAMVIGIFDKLAELLREEALTLQEYTELLEA 580

Query: 557  YPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP-SLND 614
                 +      + + V++  +  ++  +  V+  +                +       
Sbjct: 581  GFEEARVRLIPPSADRVQVGDLERSRLTDIKVLIFLGLNDGWVPATGAGGGLLSDMERET 640

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                 + +  +  +N+ +     +L  +   E   L     T     L       T    
Sbjct: 641  LMESRVELAPTTRQNSYIQRFYLYLNLTKPRERLYLSCSKATADGSLLRPSYVMRTIGRL 700

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSI----------NKDEWIAYEWSTHHPENTPL 724
                    + V +SF +     +  L   +             EW+         E+T  
Sbjct: 701  FPGLSVHDEDVCESFSSRVETPQNALAYLLEGFWSIRERQPSGEWLELYNWYRRKEDTKK 760

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESL 773
            + +  ++                +    E  + + S ++                  E  
Sbjct: 761  QVQRLVEAAFLTFDESGIGRKAARELYGEVLVNSVSRLEKFASCAFAHFLQYGLRLQERE 820

Query: 774  LSDNQTFNRGLIIHKLLQV-----------IFTLPEHKRKNFITSYCTKNAKLWPAKEY- 821
                +  + G + H  +++            F +PE  R  FI     + +  +  +   
Sbjct: 821  EYVFRPVDMGRVFHSAIELYSRKVEESGYDWFRIPEEVRDRFIEEAVNEVSAAYGQQILH 880

Query: 822  -----KNLLLSITRLLE---NPMMTTAMSCDSYS---EVSVSGKINCP--------KKDI 862
                 + ++  + R++      +     S   Y    EVS S              ++ +
Sbjct: 881  DSARNEAMIGRMKRIMRRTVWALHRQIQSGHFYPANFEVSFSQAEELEAVNIALSPEEKM 940

Query: 863  IISGRIDQ--ISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKILKDS-- 914
             + GRID+  +   ++ ++  + +YK+        + +   +  QL +  Y     +   
Sbjct: 941  RLQGRIDRIDVCEKEEQVYVKVIDYKSG---NTSFDLVALYYGLQLQLVVYLNAAMELEK 997

Query: 915  --YPNKSLVCL--LIYVSEPKVFIIPQNK 939
              +P K +V      Y  +  +    +  
Sbjct: 998  KVHPEKEIVPAGIFYYHMQDPLVETDEEL 1026


>gi|154498366|ref|ZP_02036744.1| hypothetical protein BACCAP_02355 [Bacteroides capillosus ATCC
           29799]
 gi|150272677|gb|EDM99855.1| hypothetical protein BACCAP_02355 [Bacteroides capillosus ATCC
           29799]
          Length = 1118

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 77/736 (10%), Positives = 182/736 (24%), Gaps = 135/736 (18%)

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS----------ILARR 348
           +   G     ++ E    +   +    +       ++   E  A                
Sbjct: 252 ARENGVPARTEIQENRAKEGPEELAFLEAHLFDAPETPWAEKPAHISLFKAGSPYAEVEY 311

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
            A  I  ++  +           + +DI V  R          L   +   Y + V    
Sbjct: 312 TAGEILRLVQEE---------GYRFRDIAVTARS---MEGYGELIETIFARYGVPVFLAK 359

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
              +     +  + +    +            LK+ L   SE+D   +     + +    
Sbjct: 360 MSDILQKPILALITSALAAVAGDYQYDDLFRYLKTGLTGVSEEDRDLLENYALKWDLRGS 419

Query: 469 YIQKFANCGISKF---------------------QHVIKYIHELIH------IAQFCSPH 501
              +  +  +                        + VI  + EL        +    + +
Sbjct: 420 RWTQKGDWTMHPKGYGLPVRPEDEALLARLNAVRRQVIAPLEELRKNPDHTGLGHTKALY 479

Query: 502 DFFTLIL--GAKKGRQQFISRFGNEV--------IDVLDEFLNFTLRNEQNSYSSLQELI 551
            F   I      + R   +   G            D+L   L    +   ++     E  
Sbjct: 480 AFLERIGLPERLEERTAALQERGEPALAQEYSQLWDILCNALEQCAQIVGDTPMEADEFA 539

Query: 552 SELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                        A   + + V    +          VFL+                +  
Sbjct: 540 RLFSLVLSQYDVGAIPVSLDRVTAGEMPRLAHKHCKAVFLLGADDGAIPQAAPSPGLL-- 597

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
             NDD    +     +    +                  ++Y     A ++L +   +  
Sbjct: 598 --NDDDRSLLASYGLELAPTL---------TEKLNRELTIVYETCALAGERLSVSWAAMG 646

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI-NKDEWIAYEWSTHHPENTPLEREET 729
           S  ++         +   F     V + +L  +        A E +  +PE     R   
Sbjct: 647 SGGEEQRPAFLIPRLRGLFPALRPVTEAELEGAFRLSAPRPALELAGRYPEAAQALRAMP 706

Query: 730 IKQL-------MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------E 771
                             K   + +         ++ S +D     +             
Sbjct: 707 EYAPLVERMEQAAGLTRGKLSRAAVDALYGSRVPMSASRMDKYKSCHFSYFMQYGLKAEP 766

Query: 772 SLLSDNQTFNRGLIIHKLLQVIFTLPE--------------HKRKNFITSYCTKNAKLWP 817
              +  Q    G  +H +L+ +F   E                    +  Y  +      
Sbjct: 767 RKKAGFQAPEYGTFVHYVLEHVFQSEEWRDENGGVDGDKLDALTDEIVERYIKEELGGLA 826

Query: 818 AK------EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS-----------GKINCPKK 860
            +       ++ LL  +  ++ N  +   +S   +  ++              ++     
Sbjct: 827 EETPRFRYLFQRLLKPVRAVVRN--VAEELSASDFKPIAFELGFGSGKDLPPVELEVDGV 884

Query: 861 DIIISGRIDQI--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD--- 913
            I ISG +D++   +      + + +YKT      ++  +      Q+ +Y   L+    
Sbjct: 885 TISISGFVDRVDGWVKDGRLNLRVVDYKTGRKSF-DLTDVWNGMGLQMLLYLFTLQKEGR 943

Query: 914 -SYPNKSLV-CLLIYV 927
             +    +    ++Y+
Sbjct: 944 DLFGGHEIDPAGVLYL 959


>gi|310767223|gb|ADP12173.1| DNA helicase IV [Erwinia sp. Ejp617]
          Length = 684

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 87/309 (28%), Gaps = 42/309 (13%)

Query: 1   LKNRFGLSLNESYELIYKDLWPL--------PYFQVSDINKYVSLSMETGNPTIL--KKA 50
           ++ R G   +      +     +        P     + +     S+          +K 
Sbjct: 261 IRARLGTE-DLQARTFHALALHIIQQGSNKSPAISRLETDSDKRQSLLINVWRQQCDEKK 319

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
                  Q    E ++ +    F       ++        +    L      +Q   I+ 
Sbjct: 320 AQANGWRQWLTDELKWDVSDGSFWQDDRLARR---LAGRLESWLGLMRMHGGAQAAMIET 376

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
                     K     + L   L   ++ A K+   +DF  LI    +LL K        
Sbjct: 377 APEEVRLLFTKR----VKLMAPLMKAWKGALKEEGAVDFAGLIHQAVNLLDK-------- 424

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            +      HIL+DE QD S                     ++  +LFAVGD+ Q+IY F 
Sbjct: 425 GRFISPWKHILVDEFQDISPQ--------RAALLAALRRQNTQTSLFAVGDDWQAIYRFS 476

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GAE                          L  ++R    I  V +            + +
Sbjct: 477 GAEMVLTTAFHHYFGA--------GDRCVLDTTYRFNQRIGEVANTFVQSNPFQLKKTLN 528

Query: 291 STTTIRHRS 299
           S +    ++
Sbjct: 529 SLSKGNKKA 537



 Score = 45.3 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 107/348 (30%), Gaps = 42/348 (12%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLK 397
              LARR+A  + + +G   +    +  +I+   +++ +L  KR     PL+      LK
Sbjct: 345 DDRLARRLAGRLESWLGLMRMHGGAQAAMIETAPEEVRLLFTKRVKLMAPLMKAWKGALK 404

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL------------ 445
            +  +   G     +      + +      ++ +  D+S                     
Sbjct: 405 EEGAVDFAGLIHQAVNLLDKGRFISPWKHILVDEFQDISPQRAALLAALRRQNTQTSLFA 464

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCG-ISKFQHVIKYIHELIHIAQFCSPHDFF 504
                  I++         T + +     +   +       + I E+ +     +P    
Sbjct: 465 VGDDWQAIYRFSGAEMVLTTAFHHYFGAGDRCVLDTTYRFNQRIGEVANTFVQSNPFQLK 524

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +    KG ++ IS    E ++     LN        +   L        +     K A
Sbjct: 525 KTLNSLSKGNKKAISLLPEEQLEP---LLNKISGYATPAERILLLARYHHLRPDVLDKAA 581

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
               +  +  MT+H +KG ++  V ++                               P 
Sbjct: 582 TRWPNLNIDFMTIHASKGQQADYVVVLGLSEGK----------------------DGFPA 619

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
           +   + + + L+   +     E  RL YV MTRA  Q+ +    +  +
Sbjct: 620 AARESVMEAALLPVPEDFPHAEERRLAYVAMTRARQQVWLLYDRDAPS 667


>gi|256962365|ref|ZP_05566536.1| DNA helicase [Enterococcus faecalis Merz96]
 gi|293385317|ref|ZP_06631130.1| putative DNA helicase [Enterococcus faecalis R712]
 gi|293386571|ref|ZP_06631154.1| putative DNA helicase [Enterococcus faecalis S613]
 gi|312908105|ref|ZP_07767085.1| UvrD/REP helicase [Enterococcus faecalis DAPTO 512]
 gi|312979002|ref|ZP_07790722.1| UvrD/REP helicase [Enterococcus faecalis DAPTO 516]
 gi|256952861|gb|EEU69493.1| DNA helicase [Enterococcus faecalis Merz96]
 gi|291077423|gb|EFE14787.1| putative DNA helicase [Enterococcus faecalis R712]
 gi|291083976|gb|EFE20939.1| putative DNA helicase [Enterococcus faecalis S613]
 gi|310625916|gb|EFQ09199.1| UvrD/REP helicase [Enterococcus faecalis DAPTO 512]
 gi|311288181|gb|EFQ66737.1| UvrD/REP helicase [Enterococcus faecalis DAPTO 516]
          Length = 573

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 36/232 (15%)

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y++      ++  +D+I  +  +L+K      I   I  +  +I+IDE QDTS IQ  +
Sbjct: 185 DYKKICWAKGMIHHDDVIFLSLKILEKN---CRIVDIIRAKFPYIMIDEFQDTSSIQNNI 241

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ + +              +  +GDE QSIY F GA  +  +                 
Sbjct: 242 MKQIAD----------KETIVGVIGDECQSIYEFAGANVEEFINF----------DINDL 281

Query: 256 SIIELPLSFRSTADILTVVDKV--------FSIPENAQGLS-----EDSTTTIRHRSSRI 302
              ++  + RST +I+ +++ V        FS  E              T   + +S  +
Sbjct: 282 RQYKMEENNRSTVEIINLLNHVSRDASLKQFSPKEKRGEKPTLFIGNMHTAYQQAKSVVL 341

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                V  + +             +S       L ++         +  +I 
Sbjct: 342 DSPLLVLTYRKDNPNQLKYGVEDVDSEELKLSLLFEDDDRGRKLYYVIQSIE 393


>gi|238027963|ref|YP_002912194.1| UvrD/REP helicase [Burkholderia glumae BGR1]
 gi|237877157|gb|ACR29490.1| UvrD/REP helicase [Burkholderia glumae BGR1]
          Length = 945

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 29/194 (14%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
              +     + D    Y+        L +A+ +   ++ A      +DFED++    + L
Sbjct: 538 AALRQRLDALPDDAFKYRY----RMFLDIAEPIIKAWDAALAAEDGIDFEDMLNLAAEHL 593

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +          + +     ++ DE QD S  +  + R+L +            R LFAVG
Sbjct: 594 ES--------GRYEAPYELVMADEFQDASRARARLCRALVQK---------PGRYLFAVG 636

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSI  F GA+   +   +               +++L  +FR    +  V  +  S 
Sbjct: 637 DDWQSINRFAGADVSVMTGFREWFGH--------GQVLKLEQTFRCPQALCDVSSRFVSK 688

Query: 281 PENAQGLSEDSTTT 294
                     S   
Sbjct: 689 NPTQISKRVTSVAP 702



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 20/103 (19%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
           +V  +TVH +KG E+  V L +  S +                         P +++ + 
Sbjct: 774 DVSFLTVHRSKGSEADYVILPEMLSVMRGRSF--------------------PNTRADDP 813

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           +++  +         E  RL YV +TRA   + +       + 
Sbjct: 814 VLALAMPAGDNYPDGEERRLFYVALTRARRSVAMFTARGQRSS 856


>gi|157370002|ref|YP_001477991.1| DNA helicase IV [Serratia proteamaculans 568]
 gi|157321766|gb|ABV40863.1| UvrD/REP helicase [Serratia proteamaculans 568]
          Length = 684

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 89/288 (30%), Gaps = 42/288 (14%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +   +  D        ++   +  +              + L+                 
Sbjct: 292 AISKLETDSKARRALLITHWQQQCAEKKAQAKGWRQWLLEELEWEVPEGDF------WQD 345

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L ++   +       +        E ++++ +E   +  +             + L  
Sbjct: 346 KRLAERLAGRLERWLGLMRMHGGSQAEMIEQADEEVRDLFSKR------------IRLMA 393

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   ++ A K    +DF  LI    ++L+K         +      HIL+DE QD S  
Sbjct: 394 PLLKAWKGALKDEGAVDFSGLIHQAVNILEK--------GRFVSPWKHILVDEFQDISPQ 445

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           + +++ +L +         +    LF VGD+ Q+IY F GAE                  
Sbjct: 446 RAQLLAALRK--------QNKQTCLFTVGDDWQAIYRFSGAELTLTTAFAENF------- 490

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             + +   L  ++R    I  V ++      +      +S +    +S
Sbjct: 491 -GEGAQCALDTTYRFNERIGEVANRFVQQNPHQLKKPLNSLSKGNKKS 537



 Score = 46.5 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 105/340 (30%), Gaps = 42/340 (12%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF----LK 397
              LA R+A  +   +G   +    +  +I+  D  V     K   L+  L +     LK
Sbjct: 345 DKRLAERLAGRLERWLGLMRMHGGSQAEMIEQADEEVRDLFSKRIRLMAPLLKAWKGALK 404

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML----------KSPLFN 447
           ++  +   G     +      + +      ++ +  D+S               ++ LF 
Sbjct: 405 DEGAVDFSGLIHQAVNILEKGRFVSPWKHILVDEFQDISPQRAQLLAALRKQNKQTCLFT 464

Query: 448 FSEDDIFKICTQRHE---TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
             +D          E   T    E   + A C +       + I E+ +     +PH   
Sbjct: 465 VGDDWQAIYRFSGAELTLTTAFAENFGEGAQCALDTTYRFNERIGEVANRFVQQNPHQLK 524

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +    KG ++ +    +E ++     L+      +     L        +     K A
Sbjct: 525 KPLNSLSKGNKKSVVLLPHEQLEN---LLDKLSGYAKPEERILVLARYHHLKPQALSKAA 581

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  +  MT+H +KG ++  V +                          G P    +
Sbjct: 582 TRWPKLTIEFMTIHASKGQQAEYVIIAGLHQGN------------------DGFPAVARE 623

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           S   + ++             E  RLLYV +TRA  Q+ +
Sbjct: 624 SILEDVLLPQPEDFPDA----EERRLLYVALTRAKHQVWL 659


>gi|62179597|ref|YP_216014.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62127230|gb|AAX64933.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322714066|gb|EFZ05637.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 684

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 89/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +    +  S              + +Q                   L 
Sbjct: 296 LESDATARHQLFLHTWRQQCSEKKAQAKGWRQWLEEEMQWVVPEGNF------WDDETLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++  P+ +     +        E +  + +E  ++  +             + L   L  
Sbjct: 350 RRLAPRLDRWVSLMRMHGGAQSEMIAGAPEECRELFGKR------------IKLMAPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S   LFAVGD+ Q+IY F GA+        +           + 
Sbjct: 450 LEALRK--------QNSQTMLFAVGDDWQAIYRFSGAQLSLTTAFHQTF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
               L  ++R  + I  + ++      +      +S T    ++
Sbjct: 494 EHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTPGDKKA 537



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 104/355 (29%), Gaps = 38/355 (10%)

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             + +      +    E+    LA R+   +S M       S       +    L   R 
Sbjct: 330 EEEMQWVVPEGNFWDDETLQRRLAPRLDRWVSLMRMHGGAQSEMIAGAPEECRELFGKRI 389

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML- 441
           +   PL+      LK +  +   G     +      + +      ++ +  D+S      
Sbjct: 390 KLMAPLLKAWKSALKAENAVDFSGLIHQAMVILEKGRFISPWKHILVDEFQDISPQRAAL 449

Query: 442 ---------KSPLFNFSEDDIFKICTQRHETE---TVYEYIQKFANCGISKFQHVIKYIH 489
                    ++ LF   +D          +       ++   +  +C +         I 
Sbjct: 450 LEALRKQNSQTMLFAVGDDWQAIYRFSGAQLSLTTAFHQTFGEGEHCHLDTTYRFNSRIG 509

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           ++ +     +PH     +     G ++ ++         LD  L+      +     L  
Sbjct: 510 DIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQ---LDALLDKLSGYAKEDERILVL 566

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
                 +     K A      ++  MT+H +KG ++  V LV                  
Sbjct: 567 ARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQADYVILVGLQEGN------------ 614

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                  G P    +S   + ++  +          E  RLLYV +TRA  ++ +
Sbjct: 615 ------DGFPAPARESIMESALLPQVEDFPDA----EERRLLYVALTRARARVWL 659


>gi|330859639|emb|CBX69978.1| hypothetical protein YEW_GY30510 [Yersinia enterocolitica W22703]
          Length = 121

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 18/110 (16%)

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              I       +IDE QDT   Q+ +  +L                L  +GD KQ+IY+F
Sbjct: 2   AQSIRTRYPVAMIDEFQDTDPQQYRIFHTLYGG--------QEECGLLLIGDPKQAIYAF 53

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            GA+    +R +       T          L  ++RS+  ++  V+++FS
Sbjct: 54  RGADIFTYIRARSEVSAHYT----------LDTNWRSSFPMVQSVNRLFS 93


>gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
 gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845]
          Length = 896

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 124/398 (31%), Gaps = 77/398 (19%)

Query: 71  SFFLTQKFTPQKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
             F        K+I  +Q+I      +      +Q+   +        K          L
Sbjct: 166 ESFTDDDREAVKHICASQKIEYDEQAVVNIYHHAQEYMDEANAPGLDGKTADRIRVL--L 223

Query: 130 AKYLNA-HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            K   A  Y   K++N + DFEDL++ T D+ +             +    I +DEVQD 
Sbjct: 224 WKMYYANCYARYKEENHLFDFEDLLLYTYDIYRSDPTC--------KRYPWIQVDEVQDL 275

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q  +I  LT +             +  +GDE+Q+I+SF GA+ + +   K       
Sbjct: 276 NGMQLAIIDLLTAE---------DNPMVMYLGDEQQAIFSFMGAKVETLTLLK------- 319

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                K +I  L  + RS   +L V +                        +        
Sbjct: 320 --MRCKGNIHHLQRNHRSPKYLLDVFN----------------------DYAEKQLKIDR 355

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L     +   +     +   +                     TI       T  +    
Sbjct: 356 ELLPLSDNDTKATSGDLRIIHS--------------------STIEAEHKDITTEALSLY 395

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              + +   V+V    D   I+           ++        L D   +K L+A    +
Sbjct: 396 EQNKEERTAVIVSANSDADRISEAMTE----AGLTHFKVSGRDLFDTPDVKLLLAHLSVL 451

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
            ++ + +++  ++K  +  F    + +    + +   +
Sbjct: 452 SNEHNSIAWTRIMKG-VRAFPSHALARRFNWKLKQLAL 488


>gi|329296503|ref|ZP_08253839.1| DNA helicase IV [Plautia stali symbiont]
          Length = 693

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 24/165 (14%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 382 VRLMAPLLKAWKSALKVEGAVDFSGLIHQAIAVLEK--------GRFISPWKHILVDEFQ 433

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++ +L +         +   +LFAVGD+ Q+IY F GAE             
Sbjct: 434 DISPQRAALLSALRQ--------QNKRTSLFAVGDDCQAIYRFSGAEMSLTTAFHHYF-- 483

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
                  +     L  ++R    I  + ++      +      +S
Sbjct: 484 ------GEGDRCVLDTTYRFNDRIGDIANRFVQQNPHQLRKPLNS 522



 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 104/357 (29%), Gaps = 45/357 (12%)

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           ++ +W        Q+     LA+R+A  +   +G   +    +  +I      +     K
Sbjct: 324 EELAWDVPEGPFWQDD---KLAQRLAVRLERWLGLMRMHGGAQAAMIADVPEPLCDNFTK 380

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR-----FILSQEDDLSFVC 439
              L+  L +  K+  K+    +   ++   +A+ +            +   +D      
Sbjct: 381 RVRLMAPLLKAWKSALKVEGAVDFSGLIHQAIAVLEKGRFISPWKHILVDEFQDISPQRA 440

Query: 440 MLKSPLF-----------NFSEDDIFKICTQRHETETVYEYIQ-KFANCGISKFQHVIKY 487
            L S L                  I++         T + +   +   C +         
Sbjct: 441 ALLSALRQQNKRTSLFAVGDDCQAIYRFSGAEMSLTTAFHHYFGEGDRCVLDTTYRFNDR 500

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I ++ +     +PH     +    KG  + I+    E    L+  L+      +     L
Sbjct: 501 IGDIANRFVQQNPHQLRKPLNSLSKGNNKSITLLPQEQ---LEALLDKLSGYAKPDERVL 557

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
                   +     K         +  MT+H +KG ++  V ++                
Sbjct: 558 LLARYHHLRPAMLDKAKTRWPKLRIDFMTIHASKGQQADFVIVLGLHEGR---------- 607

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                    G P    +S     ++             E  RL YV +TRA  Q+ +
Sbjct: 608 --------DGFPAQARESIMEEGLLPQPEDFPHA----EERRLAYVAITRARQQVWL 652


>gi|161503847|ref|YP_001570959.1| DNA helicase IV [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160865194|gb|ABX21817.1| hypothetical protein SARI_01935 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 684

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 24/173 (13%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L K         +      HIL+DE Q
Sbjct: 389 IKLMAPLLKAWKSALKAENAVDFSGLIHQAMAILDK--------GRFISPWKHILVDEFQ 440

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S  +  ++++L +         +S  TLFAVGD+ Q+IY F GA+        +    
Sbjct: 441 DISPQRAALLQALRK--------QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTF-- 490

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                  +     L  ++R  + I  + ++      +      +S T    ++
Sbjct: 491 ------GEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTAGDKKA 537



 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 25/199 (12%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            ++   +  +C +         I ++ +     +PH     +     G ++ ++      
Sbjct: 486 FHQTFGEGEHCHLDTTYRFNSRIGDIANRFVQQNPHQLKKPLNSLTAGDKKAVTLLDESQ 545

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  L+      +     L        +     K A      ++  MT+H +KG ++
Sbjct: 546 ---LDALLDKLSGYAKEDERILVLARYHHLKPTSLQKAAIRWPKLQIDFMTIHASKGQQA 602

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V LV                         G P    +S   + ++             
Sbjct: 603 DYVILVGLQEGS------------------DGFPAPARESIMEDALLPQAEDFPDA---- 640

Query: 646 EYNRLLYVGMTRASDQLII 664
           E  RLLYV +TRA  ++ +
Sbjct: 641 EERRLLYVALTRARARVWL 659


>gi|304558201|gb|ADM40865.1| ATP-dependent DNA helicase [Edwardsiella tarda FL6-60]
          Length = 563

 Score = 93.4 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 18/138 (13%)

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             YE  K ++ ++DF D++  + D L   +  +    K+   I +I +DE QDTS IQ +
Sbjct: 162 EEYERYKMESRIIDFNDILTLSRDFLANNEKVSEYLSKL---IGYIYLDESQDTSYIQLD 218

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            + S+T           +   +  VGD  Q+IY   G   K  +  K+I +         
Sbjct: 219 ALSSIT---------KYNRTIMLVVGDNDQAIYQDLGVSIKNDVSIKKILK------LND 263

Query: 255 FSIIELPLSFRSTADILT 272
            ++ +L   +RST  ++ 
Sbjct: 264 LAVRQLTGCYRSTKSLVE 281


>gi|149192557|ref|ZP_01870725.1| ATP-dependent DNA helicase Rep [Vibrio shilonii AK1]
 gi|148833607|gb|EDL50676.1| ATP-dependent DNA helicase Rep [Vibrio shilonii AK1]
          Length = 286

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 103/313 (32%), Gaps = 52/313 (16%)

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGI-- 478
           MA  R +++ +DD +F+ ++ +P        + K+        ++++E   +        
Sbjct: 1   MAYLRVLVNPDDDNAFLRIVNTPRREIGPATLEKLGSYANMRGKSLFEASFELGLEQHLS 60

Query: 479 ----SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVL 529
                  +   +++  +   A+  +  +    ++               ++     +  +
Sbjct: 61  GRGLENLRRFTQWVVTIADNAERGNTVEAVRSLVRDINYEDWLYETSSSAKAAEMRMKNV 120

Query: 530 DEFLNFTL-----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
            +  ++ +      N      SL+E++  L       +     + + V++MT+H +KGLE
Sbjct: 121 SDLYSWIVADLEGDNYDKEEKSLKEVVQRLTLRDMMERGEDEDDSDAVQLMTLHASKGLE 180

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
            P V+L+ +   +  H+                                       +   
Sbjct: 181 FPYVYLIGSEEGILPHQTSID-----------------------------------EDNV 205

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           EE  RL+YVG+TRA  +L            +  +      + +   +D   ++ K   S 
Sbjct: 206 EEERRLMYVGITRAQKELTFTICKERRQYGELIKPEHSRFLDELPFDDVEWEQAKKAVSA 265

Query: 705 NKDEWIAYEWSTH 717
            +          +
Sbjct: 266 EERMQKGQAHIAN 278


>gi|23957810|gb|AAN40823.1| unknown [Synechococcus elongatus PCC 7942]
          Length = 865

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 72/651 (11%), Positives = 173/651 (26%), Gaps = 54/651 (8%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY---TISNMIGT 359
              G++ +              Q  +W      L + S    L + IA     I+  I  
Sbjct: 164 AGEGSILVLPYTELLQQQHQLEQLAAWGWQI-KLEERSPEPWLQQWIAPNPPKIAEPIAH 222

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDT---------PLITFLTRFLKNDYKISVVGNDRF 410
                  + R +      +L +    +              L + +  +Y +        
Sbjct: 223 SYRDREQEVRSVLGHVKQLLQQNVAQSDIALLAADDRAYGPLVQQIGWEYGLPTRMLYEI 282

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEY 469
            +++    + L  L   I +  D  S + +          +    ++   R +    ++ 
Sbjct: 283 AISETRLGRWLEDLLTAIAADFDYPSGIRVFSPSFCAALPDGRQRQLRRDRPQNLVAWQT 342

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                           +++ +L    Q                   +   +        L
Sbjct: 343 SLAPEFSPWPLAASRTEWVGQLRQWLQQLGLRQGLRRWPQDLVALNRLQQQLK-----NL 397

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            E          +   + Q+   E EQ     +         V++       G +   VF
Sbjct: 398 AE--------PASETLTRQQWCQEFEQLIRISRTPVQPGRGGVQLDRPEQIVGAQIGHVF 449

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +     V+         I  S        + +P   + + +    ++ +      +  +
Sbjct: 450 YLGLNEGVWPAPLASSSLIDYSD-RRQLQRLGLPLPTAASLVQQAKVQWIGALAATQTAQ 508

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             +V      +QL    +      +               +    + +  L +  +    
Sbjct: 509 FSWVRQHDNREQL-PSAYLEQMGLRSQITPAADSPHSPEEYRRRLLAQSTLVDDGDPIAH 567

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
            A + S         E      QL D   IP +  S              +         
Sbjct: 568 SAQQRSQQVQARLQGE-AVWNGQLADSISIPTRPLSVTGIIQLGQCPYRWAASKLLNLQT 626

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR-----------KNFITSYCTKNAKLWPA 818
                 D      G ++HK L+++    + +            +        +  +    
Sbjct: 627 DSERSDDPDAAMTGTLLHKALELLTPQLKTETLPDREILLAIVETAAAHLAKQRPREGDL 686

Query: 819 KEYKNL-------LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
           +++          +  + RLL +P   +  S     E S  G+       + + G ID+I
Sbjct: 687 RQHPRWTAFQLSYVNLLERLLRSPNFRSPDSEIIAVEQSFEGQWQ----GLPVRGTIDRI 742

Query: 872 SISQQNIFIFEYKTHHHVPQEIE-HIPYTHIAQLSIYEKI-LKDSYPNKSL 920
             +   + + +YK      +  +         QL++Y+++      P++ +
Sbjct: 743 DRTSAGLELIDYKLGSTTQKVWDTDQKLKLDLQLALYQEVGAAAIAPDQPV 793


>gi|312874821|ref|ZP_07734840.1| UvrD/REP helicase [Lactobacillus iners LEAF 2053A-b]
 gi|311089566|gb|EFQ47991.1| UvrD/REP helicase [Lactobacillus iners LEAF 2053A-b]
          Length = 642

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 26/203 (12%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           L  ++++     +++   ++    Y +  +   I +DE QDT+ IQ E+I+ +       
Sbjct: 207 LTHDEILYFGYRIIQTNPIA---LYTLRVKFPFIFVDEFQDTNPIQTEIIKLI------- 256

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    +  VGD  QSIYSF GA+    L           N   +     +  + RS
Sbjct: 257 ---GSKSTKIIIVGDVAQSIYSFQGAKVSDFLEF---------NINNEVEEYSIDSNRRS 304

Query: 267 TADILTVVDKVFSIPENAQ----GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           T +I+   + +    +N         +D  T I   S +     + ++   + S  +   
Sbjct: 305 TENIVNFCNFIRCSDKNIFQSSIRKYKDDKTIIEKISIKFLLGRSDEVKRTLYSILNDNG 364

Query: 323 NPQQESWTSYFDSLPQESSASIL 345
                SW   F  +        +
Sbjct: 365 VILARSWVDAFKFIQNIEENQSV 387


>gi|309808403|ref|ZP_07702302.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
 gi|308168231|gb|EFO70350.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a]
          Length = 473

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 26/203 (12%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           L  ++++     +++   ++    Y +  +   I +DE QDT+ IQ E+I+ +       
Sbjct: 207 LTHDEILYFGYRIIQTNPIA---LYTLRVKFPFIFVDEFQDTNPIQTEIIKLI------- 256

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    +  VGD  QSIYSF GA+    L           N   +     +  + RS
Sbjct: 257 ---GSKSTKIIIVGDVAQSIYSFQGAKVSDFLEF---------NINNEVEEYSIDSNRRS 304

Query: 267 TADILTVVDKVFSIPENAQ----GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           T +I+   + +    +N         +D  T I   S +     + ++   + S  +   
Sbjct: 305 TENIVNFCNFIRCSDKNIFQSSIRKYKDDKTIIEKISIKFLLGRSDEVKRTLYSILNDNG 364

Query: 323 NPQQESWTSYFDSLPQESSASIL 345
                SW   F  +        +
Sbjct: 365 VILARSWVDAFKFIQNIEENQSV 387


>gi|297379579|gb|ADI34466.1| Hypothetical protein HPV225_0378 [Helicobacter pylori v225d]
          Length = 778

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/425 (12%), Positives = 115/425 (27%), Gaps = 73/425 (17%)

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           SL++L+    Q      R   ++  ++R+M     +G++   + +VD             
Sbjct: 378 SLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCD 437

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           + +  +L     +P  + +   + +    L K+ K         L Y+            
Sbjct: 438 LFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EMALSYI------------ 479

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                   +    +    ++    H +       L       ++   E     P++    
Sbjct: 480 --------ESETSKVSNMLLELDLHIEPIKDAYTLFAPTPLKDYQEEEIQATIPKDFSF- 530

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
                        +   L    +   +       S  D                   G +
Sbjct: 531 ---------SVSSLNAFLTCRRRFYYHYIKRFKESPKDENNS-------------AVGSL 568

Query: 786 IHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL--LLSITRLLENPMMTTAM 841
           +H+LL          +  +  +         + P +    L  L  I             
Sbjct: 569 LHELLKEAYEKDKNPYTLEERLIQLLETRGNITPKERLDTLVALKKIQAFYVKE--KERF 626

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT--------------H 886
           S      + +        + +   GRID+I  +    + + +YK                
Sbjct: 627 SAKIKI-LDLEKSFETTIQGVAFKGRIDRIDKTADNEVILLDYKFKSDLKLDNMSEKQRG 685

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              P EI  I   +  Q++IY   LK+    + +      + + K+    +  L      
Sbjct: 686 GLSPIEIAQISADY--QMAIYAFALKNLGYKEPIKAFFYDLRKGKLLEEEEPILQAKMDY 743

Query: 947 ISTKI 951
           +   +
Sbjct: 744 LKYSL 748


>gi|300716125|ref|YP_003740928.1| Helicase IV [Erwinia billingiae Eb661]
 gi|299061961|emb|CAX59077.1| Helicase IV [Erwinia billingiae Eb661]
          Length = 684

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 67/222 (30%), Gaps = 28/222 (12%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
              +         ++   L      +Q   I+           K     + L   L   +
Sbjct: 344 KEERLAKRLASRLERWLGLMRMHGGAQAAMIESAPEEVRDLFSKR----VKLMAPLMKAW 399

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           + A K+   +DF  LI    ++L K         +      HIL+DE QD S        
Sbjct: 400 KSALKEEGAVDFSGLIHQAVNILDK--------GRFISPWKHILVDEFQDISPQ------ 445

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        +    LFAVGD+ Q+IY F GAE                    +   
Sbjct: 446 --RAALLAALRRQNKQTALFAVGDDWQAIYRFSGAEMTLTTAFHHHF--------GEGDR 495

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             L  ++R    I  + +K      +      +S T    +S
Sbjct: 496 CVLDTTYRFNDRIGEIANKFVQSNPHQLKKPLNSLTKGNKKS 537



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 53/377 (14%), Positives = 110/377 (29%), Gaps = 45/377 (11%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFD---SLPQESSASILARRIAYTISNMIGTDTIFS 364
           + +W Q   +  +  N  ++      +             LA+R+A  +   +G   +  
Sbjct: 308 IDVWRQQCGEKKAHANGWRQWLQDELEWEIGEGDYWKEERLAKRLASRLERWLGLMRMHG 367

Query: 365 NGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
             +  +I+   +++  L  KR     PL+      LK +  +   G     +      + 
Sbjct: 368 GAQAAMIESAPEEVRDLFSKRVKLMAPLMKAWKSALKEEGAVDFSGLIHQAVNILDKGRF 427

Query: 421 LMALGRFILSQEDDLSFVCMLKSPL------------FNFSEDDIFKICTQRHETETVYE 468
           +      ++ +  D+S                            I++         T + 
Sbjct: 428 ISPWKHILVDEFQDISPQRAALLAALRRQNKQTALFAVGDDWQAIYRFSGAEMTLTTAFH 487

Query: 469 YIQ-KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +   +   C +         I E+ +     +PH     +    KG ++ IS       D
Sbjct: 488 HHFGEGDRCVLDTTYRFNDRIGEIANKFVQSNPHQLKKPLNSLTKGNKKSISLLP---ED 544

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
            L+  LN            L        +     K         +   T+H +KG ++  
Sbjct: 545 QLEALLNKISGYATADERILILARYHHIRPAVLEKAKTRWPKLRIDFTTIHASKGQQADY 604

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V L+   +                           P +   + +   L+   +     E 
Sbjct: 605 VILLGLQNGK----------------------DGFPAAARESVMEQALLPQPEDFPDAEE 642

Query: 648 NRLLYVGMTRASDQLII 664
            RL YV +TRA  Q+ +
Sbjct: 643 RRLAYVAITRAKQQVWL 659


>gi|254522432|ref|ZP_05134487.1| UvrD/REP helicase [Stenotrophomonas sp. SKA14]
 gi|219720023|gb|EED38548.1| UvrD/REP helicase [Stenotrophomonas sp. SKA14]
          Length = 924

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 78/257 (30%), Gaps = 36/257 (14%)

Query: 41  TGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKL 100
                +   A+TL  +           L             K +   ++           
Sbjct: 487 RSGHALHDLAKTLGASDIELDPNPDREL--------PDAGAKPMPDADLIGLMRTFIAHA 538

Query: 101 KKSQDEFIKIRDRFNTY---KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTN 157
           K +      +  R          +     L +A  +   +++A      +DFED++    
Sbjct: 539 KSNCLTLDDMAGRLRQMPEDHFKERYRRFLEIAGPVFQAWDDALADERGIDFEDMLNMAA 598

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            LL+        +       + +L DE QD S  +  + R+L              R LF
Sbjct: 599 GLLE--------QGHYASPYDLVLADEFQDASRARARLCRALVS---------QPGRHLF 641

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           AVGD+ QSI  F GA+   +   +               +++L  +FR    +  +  + 
Sbjct: 642 AVGDDWQSINRFAGADVSVMTGFRE--------WMGHGQVLKLEQTFRCPQALCDISSRF 693

Query: 278 FSIPENAQGLSEDSTTT 294
            S        +  S   
Sbjct: 694 ISRNPAQIAKAVRSAAP 710



 Score = 43.0 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 36/229 (15%)

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           + V ++           + K+       + + +   +F +   ++    ++       + 
Sbjct: 656 ADVSVMTGFREWMGHGQVLKLEQTFRCPQALCDISSRFISRNPAQIAKAVR--SAAPSMG 713

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                             RQ               + L+  +   +N   ++  L     
Sbjct: 714 PVLQAFQMTRREEVQDGVRQYLAKLH--------QQLLSGAVPQGRNGRVTVFILGRYQA 765

Query: 556 QYP--PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                P   R    +  +V  +T H +KG E+  V L    ++ F         +  ++ 
Sbjct: 766 DRSAVPAEWRTSFGSTMDVEFLTAHRSKGREADYVILPGMVNRGFPSLRSDDPVLSLAMP 825

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
           D    P                          E  RL YV +TRA   +
Sbjct: 826 DGDTYP------------------------LSEERRLFYVALTRARRSV 850


>gi|118580292|ref|YP_901542.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
 gi|118503002|gb|ABK99484.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379]
          Length = 591

 Score = 93.1 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 87/554 (15%), Positives = 151/554 (27%), Gaps = 125/554 (22%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + L A Y      N ++DFE ++  +  LL        I+  +      I +DE QDT  
Sbjct: 153 QKLIAEYHSILISNKLIDFELILYYSYKLLVTYP---NIQITLSNIFELICVDEYQDTQD 209

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           + + +I  + +         +   +LF VGD  Q+IY+  G   K +   K         
Sbjct: 210 LLYAIISVIIK-------AGNGKTSLFFVGDTDQAIYASLGGVAKSLQEIKAEIDN---- 258

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
                + + L  ++RS+  I+                                       
Sbjct: 259 --MPITHLTLTGNYRSSQRIIDF------------------------------------- 279

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                S   +Q         +  +      ++ I    I   I+ +I             
Sbjct: 280 ----YSNFQTQKYQIHAVGKNAKEEGLITFNSDIHHSNIVDEIAKLIQ------LSLDTG 329

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           I   +I VLV +     ++T   R           G              L  L     +
Sbjct: 330 IPENEICVLVPQWWLITIVTKKLRASLPGVSFDASGLAPMSKNRENIWYKLSRLLLTEPN 389

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            +   S        + +F  D   +          +     +  N   S     I Y+++
Sbjct: 390 PKIYSSRYRWATDLIDSFRVDTNTEFNELYKNERDL----LRLINSIKSSEMEGIDYLND 445

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                      D F  I+G  + +   +    N   D +D+ LN    +     S +Q  
Sbjct: 446 C---------FDQFLQIIGIDQLKYPQLVEHRNLFFDNIDKRLN---DDTFKVPSDIQSF 493

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            S   +               V I T    KG E   V      +    H          
Sbjct: 494 KSFYREMT------------GVIINTCVGVKGEEFDTVISYGLLNGYVPH---------- 531

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                             N+I S       K        LLYV  +RA   L +      
Sbjct: 532 -----------------WNDIFSGRASDAAKK-------LLYVICSRAKKNLHLISEIGR 567

Query: 671 SNEKKSNQRTWYDM 684
           + +  S+     ++
Sbjct: 568 TTKSGSDLGITPEL 581


>gi|81299965|ref|YP_400173.1| hypothetical protein Synpcc7942_1156 [Synechococcus elongatus PCC
           7942]
 gi|81168846|gb|ABB57186.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 865

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 72/651 (11%), Positives = 173/651 (26%), Gaps = 54/651 (8%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY---TISNMIGT 359
              G++ +              Q  +W      L + S    L + IA     I+  I  
Sbjct: 164 AGEGSILVLPYTELLQQQHQLEQLAAWGWQI-KLEERSPEPWLQQWIAPNPPKIAEPIAH 222

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDT---------PLITFLTRFLKNDYKISVVGNDRF 410
                  + R +      +L +    +              L + +  +Y +        
Sbjct: 223 SYRDREQEVRSVLGHVKQLLQQNVAQSDIALLAADDRAYGPLVQQIGWEYGLPTRMLYEI 282

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEY 469
            +++    + L  L   I +  D  S + +          +    ++   R +    ++ 
Sbjct: 283 AISETRLGRWLEDLLTAIAADFDYPSGIRVFSPSFCAALPDGRQRQLRRDRPQNLAAWQT 342

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                           +++ +L    Q                   +   +        L
Sbjct: 343 SLATEFSPWPLAATRTEWVGQLRQWLQQLGLRQGLRRWPQDLVALNRLQQQLK-----NL 397

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
            E          +   + Q+   E EQ     +         V++       G +   VF
Sbjct: 398 AE--------PASETLTRQQWCQEFEQLIRISRTPVQPGRGGVQLDRPEQIVGAQIGHVF 449

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +     V+         I  S        + +P   + + +    ++ +      +  +
Sbjct: 450 YLGLNEGVWPAPLASSSLIDYSD-RRQLQRLGLPLPTAASLVQQAKVQWIGALAATQTAQ 508

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             +V      +QL    +      +               +    + +  L +  +    
Sbjct: 509 FSWVRQHDNREQL-PSAYLEQMGLRSQITPAADSPHSPEEYRRRLLAQSTLVDDGDPIAH 567

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
            A + S         E      QL D   IP +  S              +         
Sbjct: 568 SAQQRSQQVQARLQGE-AVWNGQLADSISIPTRPLSVTGIIQLGQCPYRWAASKLLNLQT 626

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR-----------KNFITSYCTKNAKLWPA 818
                 D      G ++HK L+++    + +            +        +  +    
Sbjct: 627 DSERSDDPDAAMTGTLLHKALELLTPQLKTETLPDREILLAIVETAAAHLAKQRPREGDL 686

Query: 819 KEYKNL-------LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
           +++          +  + RLL +P   +  S     E S  G+       + + G ID+I
Sbjct: 687 RQHPRWTAFQLSYVNLLERLLRSPNFRSPDSEIIAVEQSFEGQWQ----GLPVRGTIDRI 742

Query: 872 SISQQNIFIFEYKTHHHVPQEIE-HIPYTHIAQLSIYEKI-LKDSYPNKSL 920
             +   + + +YK      +  +         QL++Y+++      P++ +
Sbjct: 743 DRTSAGLELIDYKLGSTTQKVWDTDQKLKLDLQLALYQEVGAAAIAPDQPV 793


>gi|260102296|ref|ZP_05752533.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083893|gb|EEW68013.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 408

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 94/233 (40%), Gaps = 30/233 (12%)

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+++  KN +++++D+++ +  +L+      ++   I      I IDE QDTS+IQ E+
Sbjct: 2   EYKQSCWKNGIINYDDVLLLSLIILENNP---FVAKLISNSFPFIFIDEFQDTSIIQAEI 58

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I  L ++             +  +GDE QSIY F  +  +   +           +  K 
Sbjct: 59  ISILADN----------GSKVGVIGDENQSIYGFAHSSLETFRKF----------SLPKL 98

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
           +   + ++ RS+  I+ +++ +         + ++        +  +G    V  W    
Sbjct: 99  NKYCININHRSSDPIIKLLNGITENSGKDPQILQNIPGPKP--TIVVGDPRLVVNWFLKN 156

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
              +S C+    S+++ +    + + ++      +  I + I        G+ 
Sbjct: 157 HPQNSACSKMIISYSNDYIEQIKPNYSAP-----SKKIKDNINKMRTDDRGRF 204


>gi|325923202|ref|ZP_08184885.1| hypothetical protein XGA_3919 [Xanthomonas gardneri ATCC 19865]
 gi|325546317|gb|EGD17488.1| hypothetical protein XGA_3919 [Xanthomonas gardneri ATCC 19865]
          Length = 496

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/347 (10%), Positives = 86/347 (24%), Gaps = 55/347 (15%)

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                  +   S      K+  + E  RLLYVG+TRA   L I       +E+ +     
Sbjct: 3   KWSRDKDDPTWSAAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGPFHQHERTALSGML 62

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             +        E    +  +        +        P     +R    +  +       
Sbjct: 63  RALDTLQGAAGEGAVVVDTSTPPATLPRLPPPIEAQVPPARTPQRHIAPEWWVYSFTQLA 122

Query: 742 KLFSPIKNDINEPYILNPS--------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
              +    D      +  S        +        +++          G+++H + +  
Sbjct: 123 NADAGAATDPMASATVVGSGGSDEPSGSEAIAVAAEVDTFDPRFAGNRFGVVMHDVFERC 182

Query: 794 FTLPEHKR--------KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--------- 836
                H                        +   E  + L  +T L+ + +         
Sbjct: 183 DFAAWHAWHPGQPAPEGQAAAILEALQRGGYTQDELDDGLAMLTALIGHTLTVALPEGTT 242

Query: 837 MTTAMSCDSYSEVSV---------SGKINCPKK----------------DIIISGRIDQI 871
           +         +E+              +    +                + +++G ID  
Sbjct: 243 LAAVPEPQRRNEMEFHFAMRPTRVEALLALLHRFGVVSDRQAFGARQRLEGLMTGLIDLT 302

Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
                  ++ +YK++     + + +        +  Q  IY   L  
Sbjct: 303 YTVDGRWYVLDYKSNRLPSYDADALARAMAHSEYELQALIYTVALHR 349


>gi|91783265|ref|YP_558471.1| putative ATP-dependent DNA helicase, Rep [Burkholderia xenovorans
           LB400]
 gi|91687219|gb|ABE30419.1| Putative ATP-dependent DNA helicase, Rep [Burkholderia xenovorans
           LB400]
          Length = 520

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 23/241 (9%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE    +N ++DF+ L++    L++K +   W+R+ I  +   ++IDE QD  +  
Sbjct: 163 VVEAYENLLLQNGLIDFDGLVLAGLQLVEKNE---WVRHAIRAKYPVVVIDEYQDLGVPL 219

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++ +L +          +   + AVGD  QSIY F GA+P  +               
Sbjct: 220 HRIVLALLQ----------AGVRIIAVGDPDQSIYGFTGAKPDLLTAL---------AGL 260

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS-RIGQVGTVQLW 311
           Q+   + L L++R    I+     +   P   +     S     HR    I +     L 
Sbjct: 261 QQMESVTLKLNYRCADRIIAASRALLPEPAEFRSHDGRSGEIHIHRLECSIREQADYALG 320

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             V +  ++  +         + +L + +  +  A  +      +     I        +
Sbjct: 321 TLVPALLEANPSWAPGDIAVLYRTLNEGAPIAEAADALGLQYFRLDNGSPIKRTRVTEWL 380

Query: 372 Q 372
            
Sbjct: 381 T 381


>gi|60680634|ref|YP_210778.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC
           9343]
 gi|60492068|emb|CAH06830.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC
           9343]
          Length = 592

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 78/550 (14%), Positives = 144/550 (26%), Gaps = 150/550 (27%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +  +Y+  K +   +D+  ++  +  LLK+      I   +     +ILIDE QDT  +Q
Sbjct: 168 IYDYYQNLK-EKHEIDYGLILYYSYCLLKEN---QSICKTLSNIFPYILIDEYQDTKELQ 223

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + ++ ++ +               F VGD  QSIY   G  P    + +          G
Sbjct: 224 YMILGAILKT--------GKENKAFIVGDPNQSIYGNLGGFPMNKTQLE-------NVTG 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKV--FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +  + L  ++RS++ +++  D    ++    A G ++D  + I +             
Sbjct: 269 LYYDELSLSNNYRSSSLLVSYFDYFKTYANKIEATGKTKDYQSVISYN------------ 316

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                                      +  S   L   I   I   I    IF       
Sbjct: 317 ---------------------------KTISIEDLENEIVRIIQTNIDEYHIF------- 342

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
               +I +L  +      +T         Y                       L R IL+
Sbjct: 343 --PNEICILAPQWIHLSGLTRNLMARLPQYS---FDGPGMAPFARDIDNFWYKLSRIILT 397

Query: 431 QEDDLSFVCMLKSP--------LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
                 ++  L+              +  D+            +              F 
Sbjct: 398 DSTPGLYIRRLRWASEIVTNLISIGVTNVDLSAKQILYICNNILINEQDGLEYLKKF-FN 456

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             +  ++  I+  ++   H  +     + K R + + + G E I  +D F     +    
Sbjct: 457 AFLDRVNIDINQNKYLKMH--YDAFFDSSKKRIERLKKEGAEFITNIDTFRKVFQQ---- 510

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
                                        + I T H  KG E   V           H  
Sbjct: 511 --------------------------KKGITISTNHGVKGAEFDTVIAFGLLDGYVPHFS 544

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                    +E   R+LYV  +RA   L
Sbjct: 545 ELN-------------------------------------KEESAKRILYVIASRARKNL 567

Query: 663 IICKHSNTSN 672
            +        
Sbjct: 568 YLISEQGRKK 577


>gi|325269993|ref|ZP_08136602.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
 gi|324987716|gb|EGC19690.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM
           16608]
          Length = 896

 Score = 92.7 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 115/374 (30%), Gaps = 74/374 (19%)

Query: 71  SFFLTQKFTPQKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
             F        K+I  +Q+I      +      +Q+   +        K+       L  
Sbjct: 166 ESFTDDDREAVKHICASQKIEYDKQAVVNIYHHAQEYMDEANAPGLDGKLADRIRVLL-W 224

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
             Y    Y   K++N + DFEDL++ T D+               +    I +DEVQD +
Sbjct: 225 KMYYAGCYARYKEENHLFDFEDLLLYTYDIYSSDPTC--------KRYPWIQVDEVQDLN 276

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q  +I  LT +             +  +GDE+Q+I+SF GA+ + +   K        
Sbjct: 277 SMQLAIIDLLTAE---------DHPMVMYLGDEQQAIFSFMGAKTETLTLLK-------- 319

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               K +I  L  + RS   +L V +   S  E    +  D      + +        + 
Sbjct: 320 -MRCKGNIHHLQRNHRSPKYLLDVFN---SYAERQLQIDRDLLPVSDNDAKASPGDLRII 375

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               + ++           +    D                                   
Sbjct: 376 HSSTMETERRDVTEEALRLYEQNKDERT-------------------------------- 403

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                   V+V    D   I+           ++        L D   IK L+A    + 
Sbjct: 404 -------AVIVSANSDADRISDTM----TQAGLTHFKVSGRDLFDTPDIKLLLAHLSVLA 452

Query: 430 SQEDDLSFVCMLKS 443
           ++ + +++  ++K 
Sbjct: 453 NEHNSIAWTRIMKG 466



 Score = 42.6 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 69/265 (26%), Gaps = 54/265 (20%)

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
            +  H AI D+ A    +       S     ++      +   F    +R+  E   E +
Sbjct: 663 GVNSHRAIDDVRATISLVHLCARKASEKQAKQTAFLRHPKVRPFADALRRNYGEWYQEAV 722

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ--QFISRFGNEVIDV 528
            +      +    + K +             +    +    +  +      R     +  
Sbjct: 723 GRLYRRSNNHEPALAKELSSTYDCFHSDGLINEIPRLSYILRYLRIDMLTDRNVPNALA- 781

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
                             L + I ++            +    V + TVH AKGLE   V
Sbjct: 782 ----------------PQLSQYIMDINTLKEADFCNSRSILERVYVTTVHKAKGLEFDNV 825

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            L D     + + + K                                    +   EE  
Sbjct: 826 ILFDAADGRYPNVYNKT-----------------------------------RQQDEEDA 850

Query: 649 RLLYVGMTRASDQLIICKHSNTSNE 673
           R  YV M+RA  +LII      ++ 
Sbjct: 851 RKFYVAMSRAKRRLIIAYAMQMTDR 875


>gi|77360828|ref|YP_340403.1| helicase IV [Pseudoalteromonas haloplanktis TAC125]
 gi|76875739|emb|CAI86960.1| putative helicase IV [Pseudoalteromonas haloplanktis TAC125]
          Length = 731

 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 57/164 (34%), Gaps = 24/164 (14%)

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            A+  L   ++  Y+        +DF+D+I+     + K+ V+            HIL+D
Sbjct: 420 SAAAQLLIAMHRAYKTQLIAQNCIDFDDMILQATQAVNKQQVNVP--------WQHILVD 471

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QD S  +  ++ SL +        H       AVGD+ QSIY F G       R    
Sbjct: 472 EFQDISAARMALLNSLIK--------HGHKVRFTAVGDDWQSIYRFSGGNLALTTRF--- 520

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
                       S+  L  +FR    I  V  +           
Sbjct: 521 -----NELVGSHSLTLLQKTFRYNNSISDVAGRFVMQNPEQYKK 559



 Score = 49.2 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 22/117 (18%)

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                   A       V  +T+H+AKGLE+    ++      F                 
Sbjct: 615 LNKVQQHLASQQKSANVAFLTLHSAKGLEADYCIIIGLEQGKFGF--------------- 659

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                  P S+  N ++  L+         E  RLLYVG+TRA  +  +   +   +
Sbjct: 660 -------PSSQQNNPLLEALLPSQDTFAYSEERRLLYVGLTRAKHKAYLIADAKQPS 709


>gi|323143387|ref|ZP_08078073.1| topoisomerase DNA-binding C4 zinc finger domain protein
           [Succinatimonas hippei YIT 12066]
 gi|322416835|gb|EFY07483.1| topoisomerase DNA-binding C4 zinc finger domain protein
           [Succinatimonas hippei YIT 12066]
          Length = 999

 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 105/355 (29%), Gaps = 58/355 (16%)

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIR-DRFNTYKMFKSTLASL--------TL 129
             + +    +  KK+    E+L+        IR DR +  ++                + 
Sbjct: 484 EAKSSEEIIKGLKKNDAFLEQLELFIKCLKAIRVDRISEEEVVNRYKNFHIPYPEYYGSF 543

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L   Y    ++   +DF+D+I+   D +K                 +ILIDE QD S
Sbjct: 544 FNRLVRDYCAELEQQHAIDFDDMILKATDKIKS--------GTFISPWKYILIDEFQDIS 595

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           L + E+I+ +           SS   L  VGD+ Q+IY F G + +   R          
Sbjct: 596 LARLELIKQII--------AKSSGCVLNCVGDDWQAIYHFSGGKLEVTTRFSDYIGTY-- 645

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
                 ++ +L  ++R  + I  +                 +                + 
Sbjct: 646 ------TLTKLEKTYRYNSSIALMAGTFIQENPEQFRKDVKAP--------------CID 685

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
               V        N  +     +     +  ++  +A +    I ++   D   S     
Sbjct: 686 NNPHVHLLDCRDGNTYKILAEHFVKENKKFHTSLAMASKAIELIKDIKNRDPKAS----- 740

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 + +L R       +    +   N +   +         +++ I      
Sbjct: 741 ------VAILARYNFLLTPLIKFLKNPLNSHFYDIKDYLSLQDKENIHIWTFHRA 789



 Score = 42.6 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 22/100 (22%)

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +   + I T H AKGLE+    L+      F                        P   
Sbjct: 776 QDKENIHIWTFHRAKGLEADYCILLGFSGGKFGF----------------------PSRI 813

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           + + ++  L+         E  RL YV +TRA     I  
Sbjct: 814 TNSVLLDALMPQTDPYPYSEERRLFYVALTRAKKDSYIVA 853


>gi|315653960|ref|ZP_07906876.1| UvrD/REP helicase subfamily [Lactobacillus iners ATCC 55195]
 gi|315488656|gb|EFU78302.1| UvrD/REP helicase subfamily [Lactobacillus iners ATCC 55195]
          Length = 642

 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 26/203 (12%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           L  ++++     +++   ++    Y +  +   I IDE QDT+ IQ E+I+ +       
Sbjct: 207 LTHDEILYFGYRIIQTNPIA---LYTLRVKFPFIFIDEFQDTNPIQTEIIKLI------- 256

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               S    +  VGD  QSIYSF GA+    L           N   +     +  + RS
Sbjct: 257 ---GSKSTKIIIVGDVAQSIYSFQGAKVSDFLEF---------NINNEVEEYSIDSNRRS 304

Query: 267 TADILTVVDKVFSIPENAQ----GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           T +I+   + +    +N         +D  T I   S +     + ++   + S  +   
Sbjct: 305 TENIVNFCNFIRCSDKNIFQSSIRKYKDDKTIIEKISIKFLLGRSDEVKRTLYSILNDNG 364

Query: 323 NPQQESWTSYFDSLPQESSASIL 345
                SW   F  +        +
Sbjct: 365 VILARSWVDAFKFIQNIEENQSV 387


>gi|220929197|ref|YP_002506106.1| ATP-dependent nuclease subunit B [Clostridium cellulolyticum H10]
 gi|251764557|sp|B8I2Y3|ADDB_CLOCE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|219999525|gb|ACL76126.1| ATP-dependent nuclease subunit B [Clostridium cellulolyticum H10]
          Length = 1149

 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 102/919 (11%), Positives = 242/919 (26%), Gaps = 179/919 (19%)

Query: 140 AKKKNCVL--DFEDLIINTNDLLKKRDVSAWIRYKID---QEINHILIDEVQDTSLIQWE 194
             K+  V    F++++      L   +  +    +I     E + +L+D  +DT      
Sbjct: 128 ELKRYNVRAESFDEVLQG----LADDNYLSHKLKEIKLIYSEFDSMLVDRYRDTDDELTL 183

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +   L       K+                 I  F G  P+ V    ++ Q+        
Sbjct: 184 LSSKLEGTEIYAKSEIW--------------IDGFAGFTPQEVEVISKLIQQAENVHITM 229

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
            + I          D+   +  VF+  + +         +   +      + T  L    
Sbjct: 230 CTDILFD-------DVQADLTDVFAAVKKSCKKFVSIAESYGVKILPPVCLNTPNLPRFK 282

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
            S+          S++     LP +      +  I   I        I    +   +Q K
Sbjct: 283 DSRELQSLETNYCSYSYRAYQLPTQDIELFESVNIYTEIEECARD--IIKQCRDNGMQFK 340

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           DI V  R          L   +   Y I    + +  +T+H  ++ ++++          
Sbjct: 341 DITVATRNLTG---YENLIGVIFEQYNIPCFIDSKTEITNHPLVRMVLSMLEIFTENWSY 397

Query: 435 LSFVCMLKSPLFNFSEDDIFKICT---------QRHETETVYEYIQKFANCGISKFQ--- 482
            S    LKS L       I  +            R   E  +    +F      K +   
Sbjct: 398 ESVFRYLKSGLTGIDNTKIDILENYVLACGIRGSRWTQEADWNTSIEFRPDDGQKPENDE 457

Query: 483 ----------HVIKYIHELIHIAQ-FCSPHDFFTLILG---AKKGRQQFIS--------- 519
                      + + +    +  +   +  DF   I          Q+  +         
Sbjct: 458 MLLNINKTRNEIREPLIRFRNRTKGRRTAGDFCAGIYEYLVEIGVEQRIRNYIEKFTQSG 517

Query: 520 --RFGNEVIDVLDEFLN---FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVR 573
             R   E   V +  ++     +    +    L++  +  +      K +      ++V 
Sbjct: 518 QLRLAGEYQQVWNILMDVFDQAVEVMADETFGLEKFANVFKIGLAEYKISSIPASLDQVL 577

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           + ++   +  E   ++++ T   VF    + +  +  +  +          S ++     
Sbjct: 578 VGSIEHIRSHEIKALYILGTNDGVFPSAGMSEGVLSDADREVLDKRGIELASDTKTRAFD 637

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
           +               L+Y  +T   + L +         +     T    +   F    
Sbjct: 638 EQY-------------LIYRTLTTPKNYLRLSWPIADHEGRTMRPSTIISRMRKIFPKVT 684

Query: 694 RVKKIKLTNS--------INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
               I   ++         +              +N  +E+ E  +++        +   
Sbjct: 685 EKSNIVKPSADKQHIDLIASPIPAFNQLVCALRQKNEGIEQGEIWREIFAWFSGQDEWKQ 744

Query: 746 --------------PIKNDINEPYILN-------PSTIDTKGKTNLESLLSDNQTFN--- 781
                             D ++   L         S ++          +          
Sbjct: 745 KCDAMINALKYRNIAAPVDKSKIRELYGKSPYFTVSRLEKYTSCPFAFYVQYGLGARERK 804

Query: 782 --------RGLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
                    G  +H +++    + +      + F   +C++       +   ++  +I  
Sbjct: 805 IYRMSPPDVGTFMHAVIERFSKMVDENNYSWREFDRQWCSEQVSKIVDELLDSMKNTILG 864

Query: 831 LLENPMMT--------------TAMSCDSYS--------EVSV--------SGKINCPKK 860
              +                    ++             EV                  +
Sbjct: 865 --GSKRFKALAVRLKRVVTRAVWLITEHIRRSSFEPVGYEVDFGDGGAYPPMVIELDSGE 922

Query: 861 DIIISGRIDQ---ISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKILKDS 914
            I + GRID+   +         I +YK+     ++ +     +  Q+ +  Y   L + 
Sbjct: 923 KIRLVGRIDRIDALRAENGTYLRIVDYKSG---EKDFKLSDVYYGLQMQLITYLDALWE- 978

Query: 915 YPNKS-----LVCLLIYVS 928
           Y +KS     +   ++Y  
Sbjct: 979 YSDKSNGEKIIPGGILYFR 997


>gi|237752642|ref|ZP_04583122.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376131|gb|EEO26222.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 662

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/622 (10%), Positives = 157/622 (25%), Gaps = 93/622 (14%)

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
           +I   I   +    +    +          + +               L+    I  +  
Sbjct: 72  KIQMQIDGFLSHFEVIIFKEISKNIPFCFSIKIDIFNQDYYQKLFVLNLEIGAYIVTLEQ 131

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            +F + D     D     + IL  +D ++ V                 +       +   
Sbjct: 132 GKFSILDFKKACDGAKNLQ-ILEFQDRIAEV-------GGIFSQIDIWLKQNVLPEQISV 183

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH-DFFTLILGAKKG-----RQQFISRF 521
               +     +  F     +   +       +   +    IL    G             
Sbjct: 184 ILPDESFVEYLKLFDKARNFNFAMGQKLNALNVFQEILDSILQKSFGNFSEFETHLKKCL 243

Query: 522 GNEV-------IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
             E         ++LDEF       E    +  ++++  LE                +R+
Sbjct: 244 EQESLGAVSLIQEILDEFRFSLPYLESLEVN--EQILVFLEILKEQSL--DDVGGGRIRV 299

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           M +   +G++   V + +  +        K + +   + +  G+P    +   + +  ++
Sbjct: 300 MGILETRGVDLEYVIIPEFNASNVPSLSDKDIFLNTKIRESVGLPTRKNRENLQKHYYAE 359

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
           L+   K++       L  V    +   L        + +K S   + Y +          
Sbjct: 360 LLGGAKEARI---LCLNNVVDKPSRFLLEDSIFGTQTPQKTSPAYSEYFL---------- 406

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                           A  +          +   +   L       +K +      +   
Sbjct: 407 -------------SGKALNYKEQQIIAPLNKDSFSATSLECFLTCKRKFYYRYVLGLK-- 451

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHKRKNFITSYCTKNA 813
                                + +  N G  IH+ L +V     E   +     +C +  
Sbjct: 452 -------------------AQEQERVNIGSKIHEALREVYAQAQEFDAEILYKEFCRRLN 492

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMS------CDSYSEVSVSGKINCPKKDIIISGR 867
               A+E           L                 + ++ V      +   +   + GR
Sbjct: 493 VSVSARER------FESELAKKYFKRVFDLEKERLKEGWNPVLFESDFSFMLEGFELKGR 546

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIA----QLSIYEKILKDSYPNKSLVCL 923
           ID+I      + + +YK   +          ++      QL +Y   +K   P  ++   
Sbjct: 547 IDRIDKKGNELLVLDYK---YKRSLKRDSVKSYDKSSDFQLPMYYLAVKMQNPKCNVDAR 603

Query: 924 LIYVSEPKVF-IIPQNKLNKAF 944
              + E  +   +       A 
Sbjct: 604 FYDLYEADIIQEVDLEAKANAL 625


>gi|213966994|ref|ZP_03395144.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301385178|ref|ZP_07233596.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059733|ref|ZP_07251274.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302134141|ref|ZP_07260131.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213928316|gb|EEB61861.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 830

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 92/334 (27%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +   + + ++H++IDE QD S      IR+   +           R     +
Sbjct: 521 TSPENLRQVSDPMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPALHVGRIAQRSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTKVMLSENFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G           ++   G    +   + +    D       E +      
Sbjct: 635 HIVRAAPAIAGK----------KARASGAPQELLAVKVLDRDEDELAERVAEHYNDGDSI 684

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           L      S  AR  A  +  +I +D       +R+             K           
Sbjct: 685 LLLYRKGSEKARF-AERLQALIDSDAARGAQGRRIRTLT-----YHSSKGLQADAVFLLG 738

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 739 DCQHLTVSPYKNQVYRLAGLGDANDL--------QPFDTAQKDEVLRLAYVAITRSARHC 790

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                             A+  +++ +   + + 
Sbjct: 791 YWYIDENAGAGESAHMPKASDRVARDKPFFEDLR 824



 Score = 39.9 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 88/308 (28%), Gaps = 41/308 (13%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   L    + +        DD   I   R  +  
Sbjct: 541 MIDEFQDVSPQIVSWIRASLREIRRRGPALHVGRIAQRSSLLCVGDDWQSIYGWRGSSPK 600

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL--------GAKKGRQQF 517
            +    +FA    S     +                +               A    Q+ 
Sbjct: 601 YF---MEFAKEFSSPATTKVMLSENFRSHQHIIDAAEHIVRAAPAIAGKKARASGAPQEL 657

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSAN 568
           ++    +  +  DE       +  +  S L               L+    +     +  
Sbjct: 658 LAVKVLDRDE--DELAERVAEHYNDGDSILLLYRKGSEKARFAERLQALIDSDAARGAQG 715

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +R +T H++KGL++  VFL+     +    +  +++ +  L D   +  +       
Sbjct: 716 R-RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGDANDLQPF------- 767

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                        + ++E  RL YV +TR++         N    + ++     D V   
Sbjct: 768 -----------DTAQKDEVLRLAYVAITRSARHCYWYIDENAGAGESAHMPKASDRVARD 816

Query: 689 FHNDERVK 696
               E ++
Sbjct: 817 KPFFEDLR 824


>gi|328881293|emb|CCA54532.1| RecB family exonuclease [Streptomyces venezuelae ATCC 10712]
          Length = 315

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 73/235 (31%), Gaps = 35/235 (14%)

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFT 795
              +  +   P  L+PS      +  L              ++   RG ++H +L+ +F 
Sbjct: 19  SEQVPAEPRAPMSLSPSRASDFMQCPLLYRFRVIDRLPEKPSEAATRGTLVHAVLERLFD 78

Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT----TAMSCDSYSEVSV 851
            P  +R     +      +     E K  L  +    E+P            +   E   
Sbjct: 79  DPAAER-TAPRARAMVPGQWERLLETKPELGQL--FAEDPEGQRLAGWLGEAERLVERWF 135

Query: 852 SGKINCPKK--------------DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHI 896
           S +     +               + + G ID+I ++   ++ I +YKT           
Sbjct: 136 SLEDPTRLEPAERELFVETELDSGLRLRGVIDRIDVAPSGDVRIVDYKTGKAPRP---EY 192

Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
               + Q++ Y  ++            L+Y+   +V  +  + +      +  K+
Sbjct: 193 RDGALFQMTFYALVVWRLRRVIPRRLQLVYLGSGEV--LTYDPVEADLRRVERKL 245


>gi|323344490|ref|ZP_08084715.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
 gi|323094617|gb|EFZ37193.1| DNA polymerase III, epsilon subunit [Prevotella oralis ATCC 33269]
          Length = 899

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 116/308 (37%), Gaps = 70/308 (22%)

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
           HY+  K+ N +LDFEDL++ + D L+    + +      +  + I +DEVQD + +Q  +
Sbjct: 233 HYKSYKQSNKLLDFEDLLMLSYDALRADLAAQY------KRYSWIQVDEVQDLNPLQLAI 286

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +LT          +   T   +GDE+Q+I+SF GA+   +   K              
Sbjct: 287 VDALTA---------TEGVTTVYLGDEQQAIFSFMGAKTDTLGVLKER---------CNG 328

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
           +I  L ++ RS A +L V +      E    + +       +   R+G     +L     
Sbjct: 329 NIHHLNVNHRSPAYLLEVFN---DYAEQVLRIDKALLPVTTYAPCRLGD----ELRLVDC 381

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           +  +++                             + +++++G   +  + +        
Sbjct: 382 NVVETEL----------------------------HEVADIVGRLFLNDDTETT------ 407

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             ++V    D   ++ + R      ++         L     +K L A    + ++ + +
Sbjct: 408 -AIIVNSNSDADAMSEVLR----KQRMPHFKVSGADLFSSSEVKQLFAHLNILANENNFI 462

Query: 436 SFVCMLKS 443
           ++  MLK 
Sbjct: 463 AWARMLKG 470



 Score = 44.1 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 48/162 (29%), Gaps = 40/162 (24%)

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFT------LRNEQNSYSSLQELISELEQYPPTIKRAH 565
              +  +S    E +D L+  +++       +    +    L     +L           
Sbjct: 744 GFYRYMLSERLMEPVDNLNRIVSYLCADMIDVSAAPSLAEQLSAYSMQLNTLKEADLCGS 803

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
           SA  + + + TVH AKGLE   V + D     + +   K   IM                
Sbjct: 804 SAIDDRIFVTTVHKAKGLEFDNVVIFDAVEGRYPNYFNKDNPIM---------------- 847

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                               E  R  YV M+RA  +L +   
Sbjct: 848 ------------------VAEDARKFYVAMSRAKKRLYVAYS 871


>gi|157375392|ref|YP_001473992.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3]
 gi|157317766|gb|ABV36864.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3]
          Length = 1020

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 81/234 (34%), Gaps = 43/234 (18%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           ++ K    +    + +  +   +    +     K T A+ TL K +   Y +    +  +
Sbjct: 615 KLVKLFSQVLTLYRGACLDDKSLAGLLSESAEQKQTQAAFTLLKPILKSYRDHLNNSGEI 674

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL-------- 199
           DFE++I      ++        + +       I++DE QD S  +  +IR+L        
Sbjct: 675 DFEEMIAKAIQYIE--------QGRFVSPWRFIMVDEFQDISEPRARLIRALRDSTCRVS 726

Query: 200 ----TEDFFVGKNTHSSPRT---------------LFAVGDEKQSIYSFHGAEPKRVLRE 240
                E+      +    +T               LF VGD+ Q+IY F GA+ K     
Sbjct: 727 KEKPAEEAKSAAGSKDKAKTRAKATSSVKSGRSASLFCVGDDWQAIYRFSGADVKLTTEF 786

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           +              +   L L+FR  + I  V  +  +        + +S T 
Sbjct: 787 EHYF--------GSVTKSHLDLTFRFNSRIGDVASRFVTQNPMQLKKTINSITK 832



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 22/100 (22%)

Query: 571  EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
             +   + H +KG E+  V ++   +                           P  K+   
Sbjct: 929  NIECHSFHASKGKEADYVIIMGLTTG----------------------VYGFPSLKTTPP 966

Query: 631  IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
            ++  L+   +     E  RL YV +TRA  ++ +      
Sbjct: 967  VLDALLPEAEDFNFAEERRLFYVALTRAQHKVYLLADRKG 1006


>gi|330965308|gb|EGH65568.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 830

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 92/334 (27%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +   + + ++H++IDE QD S      IR+   +           R     +
Sbjct: 521 TSPENLRQVSDPMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPAMHVGRIAQRSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTKVMLSENFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G           ++   G    +   + +    D       E +      
Sbjct: 635 HIVRAAPAIAGK----------KARASGAPQELLAVKVLDRDEDELAERVAEHYNDGDSI 684

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           L      S  AR  A  +  +I +D       +R+             K           
Sbjct: 685 LLLYRKGSEKARF-AQRLQALIDSDAARGAQGRRIRTLT-----YHSSKGLQADAVFLLG 738

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 739 DCQHLTVSPYKNQVYRLAGLGDANDL--------QPFDTAQKDEVLRLAYVAITRSARHC 790

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                             A+  +++ +   + + 
Sbjct: 791 YWYIDENAGAGESAHMPKASDRVARDKPFFEDLR 824



 Score = 39.9 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 88/308 (28%), Gaps = 41/308 (13%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   +    + +        DD   I   R  +  
Sbjct: 541 MIDEFQDVSPQIVSWIRASLREIRRRGPAMHVGRIAQRSSLLCVGDDWQSIYGWRGSSPK 600

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL--------GAKKGRQQF 517
            +    +FA    S     +                +               A    Q+ 
Sbjct: 601 YF---MEFAKEFSSPATTKVMLSENFRSHQHIIDAAEHIVRAAPAIAGKKARASGAPQEL 657

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSAN 568
           ++    +  +  DE       +  +  S L               L+    +     +  
Sbjct: 658 LAVKVLDRDE--DELAERVAEHYNDGDSILLLYRKGSEKARFAQRLQALIDSDAARGAQG 715

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +R +T H++KGL++  VFL+     +    +  +++ +  L D   +  +       
Sbjct: 716 R-RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGDANDLQPF------- 767

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                        + ++E  RL YV +TR++         N    + ++     D V   
Sbjct: 768 -----------DTAQKDEVLRLAYVAITRSARHCYWYIDENAGAGESAHMPKASDRVARD 816

Query: 689 FHNDERVK 696
               E ++
Sbjct: 817 KPFFEDLR 824


>gi|290510697|ref|ZP_06550067.1| DNA helicase IV [Klebsiella sp. 1_1_55]
 gi|289777413|gb|EFD85411.1| DNA helicase IV [Klebsiella sp. 1_1_55]
          Length = 684

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 88/275 (32%), Gaps = 33/275 (12%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQ 87
           +S +    +        +  ++ Q  ++ +Q +           + L +    Q     +
Sbjct: 293 ISKLESDSAARQALLVKSWQQQCQ--EKKAQAKGWRLWLEEEMGWQLPEGDFWQD----K 346

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKKKN 144
           ++ ++     ++           +          +       + L   L   ++ A K  
Sbjct: 347 KVQRRMASRLDRWVSLMRMHGGSQAEMIAGAPEAVRDQFSKRVKLMSPLMKEWKAALKAE 406

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             +DF  LI    ++L K         +      HIL+DE QD S  +  ++ +L     
Sbjct: 407 NAVDFSGLIHQAVNILDK--------GRFVSPWKHILVDEFQDISPQRASLLAALRR--- 455

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                 +S  TLFAVGD+ Q+IY F GA+                    +     L  ++
Sbjct: 456 -----QNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFNHYF--------GEGDSCALDTTY 502

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
           R    I  +         +      +S T    ++
Sbjct: 503 RFNGRIGEIAHGFIQQNPHQLSKPLNSLTAGDKKA 537



 Score = 38.7 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 22/91 (24%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            MT+H +KG ++  V ++       +     +  IM                        
Sbjct: 591 FMTIHASKGQQADYVIVLGLQEGEDAFPAPARESIME----------------------Q 628

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            L+   +     E  RLLYV +TRA  ++ +
Sbjct: 629 ALLPQPEDFPDAEERRLLYVAITRARHRVWL 659


>gi|330875041|gb|EGH09190.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 830

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 92/334 (27%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +   + + ++H++IDE QD S      IR+   +           R     +
Sbjct: 521 TSPENLRQVSDPMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPAMHVGRIAQRSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   R             + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFAREFS------SPATTKVMLSENFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G           ++   G    +   + +    D       E +      
Sbjct: 635 HIVRAAPAIAGK----------KARASGAPQELLAVKVLDRDEDELAERVAEHYNDGDSI 684

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           L      S  AR  A  +  +I +D       +R+             K           
Sbjct: 685 LLLYRKGSEKARF-AERLQALIDSDAARGAQGRRIRTLT-----YHSSKGLQADAVFLLG 738

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 739 DCQHLTVSPYKNQVYRLAGLGDASDL--------QPFDTAQKDEVLRLAYVAITRSARHC 790

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                             A+  +++ +   + + 
Sbjct: 791 YWYIDENAGAGESAHMPKASDRVARDKPFFEDLR 824



 Score = 40.3 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 89/308 (28%), Gaps = 41/308 (13%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   +    + +        DD   I   R  +  
Sbjct: 541 MIDEFQDVSPQIVSWIRASLREIRRRGPAMHVGRIAQRSSLLCVGDDWQSIYGWRGSSPK 600

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL--------GAKKGRQQF 517
            +    +FA    S     +                +               A    Q+ 
Sbjct: 601 YF---MEFAREFSSPATTKVMLSENFRSHQHIIDAAEHIVRAAPAIAGKKARASGAPQEL 657

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSAN 568
           ++    +  +  DE       +  +  S L               L+    +     +  
Sbjct: 658 LAVKVLDRDE--DELAERVAEHYNDGDSILLLYRKGSEKARFAERLQALIDSDAARGAQG 715

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +R +T H++KGL++  VFL+     +    +  +++ +  L D              
Sbjct: 716 R-RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGD-------------- 760

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
               +  ++    + ++E  RL YV +TR++         N    + ++     D V   
Sbjct: 761 ----ASDLQPFDTAQKDEVLRLAYVAITRSARHCYWYIDENAGAGESAHMPKASDRVARD 816

Query: 689 FHNDERVK 696
               E ++
Sbjct: 817 KPFFEDLR 824


>gi|21243000|ref|NP_642582.1| helicase IV [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108506|gb|AAM37118.1| helicase IV [Xanthomonas axonopodis pv. citri str. 306]
          Length = 939

 Score = 92.3 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 96/288 (33%), Gaps = 51/288 (17%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
              +  N         G     +     ++A  +    E    L   F+ +         
Sbjct: 491 RDGTLWNHLEHSLKAAGIAVGPRSQDVYRRAIASFGPIEGLEQLIMDFVLR--------- 541

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
                      K+      +   + + + N+++        L +A  +   Y++A +   
Sbjct: 542 ----------FKDSGLTEGEVLQEAKQQPNSWRALL----FLKVAFPVFHAYQQALRDAG 587

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            +D+ D++      L+          ++      +L+DE QD + ++ ++++        
Sbjct: 588 KIDYADMLREALAALRD--------GRVKTPYRFVLVDEFQDIARLRADLVK-------S 632

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
             +       +F VGD+ Q+I  F G++           +    + G+    + L  +FR
Sbjct: 633 VLDQAPYESIVFCVGDDWQTINRFSGSDVGI-------FKNIGNHFGRHERQLMLSRTFR 685

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
            ++ I T+  ++    +N           ++ R  R+     V L + 
Sbjct: 686 CSSGIATLARELVLKNDNQFDK------PVQARPDRLSHCVRVVLHKP 727



 Score = 42.2 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 23/130 (17%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +M++H +KGLE+  V LV   S        +                           
Sbjct: 792 VEVMSLHGSKGLEADFVVLVGFDSGFRGFPDER-----------------------APEP 828

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           + DL+        EE  RLLYVG+TRA  Q+I+  + +  +E         +        
Sbjct: 829 LLDLVLPKLSHENEEERRLLYVGLTRAKHQVIVLANGDAPSEYVLELSALSEHHAFIDWI 888

Query: 692 DERVKKIKLT 701
           +   ++    
Sbjct: 889 NLGAQRTDCP 898


>gi|238916497|ref|YP_002930014.1| hypothetical protein EUBELI_00554 [Eubacterium eligens ATCC 27750]
 gi|238871857|gb|ACR71567.1| Hypothetical protein EUBELI_00554 [Eubacterium eligens ATCC 27750]
          Length = 1109

 Score = 91.9 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 81/639 (12%), Positives = 186/639 (29%), Gaps = 102/639 (15%)

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               I    +    +  +I ++     D      L   +     I    + +  +TD+  
Sbjct: 339 AAGEIIRLTRLCGYRYNEIAIVT---ADMDGYGKLAANILKQNDIPYFLDYKRHVTDNPF 395

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------RHETETVYEYIQ 471
           I  +      I +     S +  L++ +     +DI  +         R   +    +I+
Sbjct: 396 IAAINGALGIIENNYSYDSILGFLRTGMSGMEREDIDLLDNYCVAVGIRGRGKWHEPWIR 455

Query: 472 KF----ANCGISKFQHVIKYIHELIH------IAQFCSPHDFFTL--------------- 506
           KF     N  + K   +   I +++        ++  +  D                   
Sbjct: 456 KFRGTVNNTDLEKLNSLRTMITDMLDPLEEVLKSKESNVADMVKALYEFLVREDMEQKVS 515

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH- 565
           +L   +       +   +VI+VLD+          +    ++E    L      IK    
Sbjct: 516 VLNDSEYTGDEYVQLYKKVIEVLDKMYALL----GSEKVGIKEFNKILASGFQEIKIGLI 571

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              ++ V I  +   +     V+F V         K   +  +  S  +       +  +
Sbjct: 572 PQTNDCVVIGDIERTRLDNIKVMFFVGINDGNVPKKADSRSVLSESDREYLEDKGIVMSA 631

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             R    +                 LY+ MT+++++L +      S             +
Sbjct: 632 SVREKAFTQ-------------RFYLYLIMTKSAEKLYMSYAVKNSEGAALMPSYIIRSM 678

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
              F +  ++         +         S  + E      E+ I  L   + +      
Sbjct: 679 RKMFSHCLKLSYKDTAQQNSYVTIPQAANSFDNTEIAANVDEDIIDSLTGGRLVGSVTSF 738

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT---------- 795
               +    Y L       + +    S +      N G+++H +++ +            
Sbjct: 739 ENFAECPLRYYLRYGVDLKEREEFTFSPV------NFGVVLHAVIREVCDEIKKNGESYY 792

Query: 796 -LPEHKRKNFITSYCTKNAKLWPAKEYKN------LLLSITRLLENPMMTTAMSCDSYS- 847
            + + KR+  +         ++     K+      ++  +  L +      AM       
Sbjct: 793 LISDEKRREMVKRSVAAITDIYQNSILKDSSRNSFMIKRMEDLAD--RTVWAMGEQLKCG 850

Query: 848 -------EVSVSGKINCPKKDIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHI 896
                  E   + ++    +  ++SG ID++ I +      + I +YKT          I
Sbjct: 851 DFVPFVFEHKFNMEVGDGDRKQLMSGTIDRVDICENGTDVYVRIIDYKTGKKDFN----I 906

Query: 897 PYTHIA---QLSIYEKI----LKDSYPNKSL--VCLLIY 926
             T+     QL +Y +     +    P K++    +  Y
Sbjct: 907 VKTYYGIDIQLMVYMEAAMKLVAKMRPGKNVIPAGVFYY 945


>gi|76664961|emb|CAJ17920.1| ATP-dependent DNA helicase [Candidatus Phytoplasma solani]
          Length = 142

 Score = 91.9 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 22/143 (15%)

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            + +K+     F++LI     LL++      +R       ++I IDE QD ++ Q  +I 
Sbjct: 4   RKEQKEKNAFTFDELIYLATKLLERD---FSLRDYFSSLYDYIFIDEFQDLTINQLNLIV 60

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L          +      F VGD  Q I SF G++        ++   +          
Sbjct: 61  YL----------NFKKNKGFFVGDFNQQINSFQGSDLNYSKDFLKLINAKYG-------- 102

Query: 258 IELPLSFRSTADILTVVDKVFSI 280
             L  ++R+   IL   + +   
Sbjct: 103 -CLKENYRNPKVILDSSNNLIEQ 124


>gi|28869969|ref|NP_792588.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28853214|gb|AAO56283.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 748

 Score = 91.9 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 93/334 (27%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRT 215
              +    +   + + ++H++IDE QD S      IR+   +       +     +   +
Sbjct: 439 TSPENLRQVSDPMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPAMHLGRIAQRSS 498

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 499 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTKVMLSENFRSHQHIIDAAE 552

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G           ++   G    +   + +    D       E +      
Sbjct: 553 HIVRAAPAIAGK----------KARASGAPQELLAVKVLDRDEDELAERVAEHYNDGDSI 602

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           L      S  AR  A  +  +I +D       +R+             K           
Sbjct: 603 LLLYRKGSEKARF-AERLQALIDSDAARGAQGRRIRTLT-----YHSSKGLQADAVFLLG 656

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 657 DCQHLTVSPYKNQVYRLAGLGDANDL--------QPFDTAQKDEVLRLAYVAITRSARHC 708

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                             A+  +++ +   + + 
Sbjct: 709 YWYIDENAGAGESAHMPKASDRVARDKPFFEDLR 742



 Score = 39.9 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 88/308 (28%), Gaps = 41/308 (13%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   +    + +        DD   I   R  +  
Sbjct: 459 MIDEFQDVSPQIVSWIRASLREIRRRGPAMHLGRIAQRSSLLCVGDDWQSIYGWRGSSPK 518

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL--------GAKKGRQQF 517
            +    +FA    S     +                +               A    Q+ 
Sbjct: 519 YF---MEFAKEFSSPATTKVMLSENFRSHQHIIDAAEHIVRAAPAIAGKKARASGAPQEL 575

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSAN 568
           ++    +  +  DE       +  +  S L               L+    +     +  
Sbjct: 576 LAVKVLDRDE--DELAERVAEHYNDGDSILLLYRKGSEKARFAERLQALIDSDAARGAQG 633

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +R +T H++KGL++  VFL+     +    +  +++ +  L D   +  +       
Sbjct: 634 R-RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGDANDLQPF------- 685

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                        + ++E  RL YV +TR++         N    + ++     D V   
Sbjct: 686 -----------DTAQKDEVLRLAYVAITRSARHCYWYIDENAGAGESAHMPKASDRVARD 734

Query: 689 FHNDERVK 696
               E ++
Sbjct: 735 KPFFEDLR 742


>gi|331014296|gb|EGH94352.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 830

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 93/334 (27%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRT 215
              +    +   + + ++H++IDE QD S      IR+   +       +     +   +
Sbjct: 521 TSPENLRQVSDPMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPAMHLGRIAQRSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTKVMLSENFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G           ++   G    +   + +    D       E +      
Sbjct: 635 HIVRAAPAIAGK----------KARASGAPQELLAVKVLDRDEDELAERVAEHYNDGDSI 684

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           L      S  AR  A  +  +I +D       +R+             K           
Sbjct: 685 LLLYRKGSEKARF-AERLQALIDSDAARGAQGRRIRTLT-----YHSSKGLQADAVFLLG 738

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 739 DCQHLTVSPYKNQVYRLAGLGDANDL--------QPFDTAQKDEVLRLAYVAITRSARHC 790

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                             A+  +++ +   + + 
Sbjct: 791 YWYIDENAGAGESAHMPKASDRVARDKPFFEDLR 824



 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 88/308 (28%), Gaps = 41/308 (13%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   +    + +        DD   I   R  +  
Sbjct: 541 MIDEFQDVSPQIVSWIRASLREIRRRGPAMHLGRIAQRSSLLCVGDDWQSIYGWRGSSPK 600

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL--------GAKKGRQQF 517
            +    +FA    S     +                +               A    Q+ 
Sbjct: 601 YF---MEFAKEFSSPATTKVMLSENFRSHQHIIDAAEHIVRAAPAIAGKKARASGAPQEL 657

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSAN 568
           ++    +  +  DE       +  +  S L               L+    +     +  
Sbjct: 658 LAVKVLDRDE--DELAERVAEHYNDGDSILLLYRKGSEKARFAERLQALIDSDAARGAQG 715

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +R +T H++KGL++  VFL+     +    +  +++ +  L D   +  +       
Sbjct: 716 R-RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGDANDLQPF------- 767

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                        + ++E  RL YV +TR++         N    + ++     D V   
Sbjct: 768 -----------DTAQKDEVLRLAYVAITRSARHCYWYIDENAGAGESAHMPKASDRVARD 816

Query: 689 FHNDERVK 696
               E ++
Sbjct: 817 KPFFEDLR 824


>gi|304389518|ref|ZP_07371481.1| RecB family exonuclease [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304327328|gb|EFL94563.1| RecB family exonuclease [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 285

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 67/213 (31%), Gaps = 33/213 (15%)

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIF 794
           +          P  L+ S+     +  L+             +    RG ++HK+L+ +F
Sbjct: 1   MSESSSAPAPRPPALSASSAKQFQQCPLKWRFKYVDKLPEPQSPAALRGSLVHKVLEDMF 60

Query: 795 TLPEHK------RKNFITSY---------CTKNAKLWPAKEYKNLLLS-ITRLLENPMMT 838
            LP  +      R+    ++          ++       +E K      I          
Sbjct: 61  DLPPAERQAPTVRETVDRAWEKVTDGAYKLSEVLAQTSEQELKAAARQLIDAYFSLEDPR 120

Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIP 897
                    E+ V   ++     + + G ID++  +    + I +YKT            
Sbjct: 121 RLHPSG--RELGVETVLSS---GLRLRGFIDRVEQAGNGDVRIIDYKTGKAPD---MRFT 172

Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
             ++ Q+ +Y  + ++ Y        L+++   
Sbjct: 173 GEYVFQMRMYALLYREQYRVTPKRTQLLFLGGN 205


>gi|309807272|ref|ZP_07701242.1| hypothetical protein HMPREF9212_1026 [Lactobacillus iners LactinV
           03V1-b]
 gi|308166332|gb|EFO68541.1| hypothetical protein HMPREF9212_1026 [Lactobacillus iners LactinV
           03V1-b]
          Length = 135

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 818 AKEYKNLLLSITRLLENPMMTTAM---SCDSYSEVSVS---------GKINCPKKDIIIS 865
                +L               A    S + Y E+  S            N     I++ 
Sbjct: 1   PDIIPHLSKHDINWFVTSNFAKAFWEKSDNLYREIEFSSLISANNLFHNFNDVNDKILVH 60

Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKILKDSYPNKSLV 921
           G ID   I    I +F+YKT       +E    ++   +  QLS+Y   L +   +K + 
Sbjct: 61  GTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYASALNNL-SDKKVK 119

Query: 922 C-LLIYVSEPKVFIIP 936
              LI +S  K+  + 
Sbjct: 120 AKYLILLSINKIVKVD 135


>gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
 gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18]
          Length = 896

 Score = 91.9 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 117/375 (31%), Gaps = 76/375 (20%)

Query: 71  SFFLTQKFTPQKNI-ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
             F        K+I  +Q+I      +      +Q+   +        K          L
Sbjct: 166 ESFTDDDREAVKHICASQKIEYDEQAVVNIYHHAQEYMDEANAPGLDGKTADRIRVL--L 223

Query: 130 AKYLNA-HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
            K   A  Y   K++N + DFEDL++ T D+ +             +    I +DEVQD 
Sbjct: 224 WKMYYAGCYARYKEENHLFDFEDLLLYTYDIYRSDPTC--------KRYLWIQVDEVQDL 275

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
           + +Q  +I  LT +             +  +GDE+Q+I+SF GA+ + +   K       
Sbjct: 276 NGMQLAIIDLLTAE---------DNPMVMYLGDEQQAIFSFMGAKVETLTLLK------- 319

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
                K +I  L  + RS   +L V +                        +        
Sbjct: 320 --MRCKGNIHHLQRNHRSPKYLLDVFN----------------------DYAEKQLKIDR 355

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L     +   +     +   +                     TI       T  +    
Sbjct: 356 ELLPLSDNDTKATSGDLRIIHS--------------------STIEAEHKDITTEALSLY 395

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              + +   V+V    D   I+           ++        L D   +K L+A    +
Sbjct: 396 EQNKEERTAVIVSANSDADRISEAMTE----AGLTHFKVSGRDLFDTPDVKLLLAHLSVL 451

Query: 429 LSQEDDLSFVCMLKS 443
            ++ + +++  ++K 
Sbjct: 452 SNEHNSIAWTRIMKG 466


>gi|282878339|ref|ZP_06287131.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
 gi|281299525|gb|EFA91902.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310]
          Length = 904

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 102/307 (33%), Gaps = 70/307 (22%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
             HY   KK+N +LDFEDL++ T D L+  D          +  + I +DEVQD + +Q 
Sbjct: 235 ARHYMAYKKENKLLDFEDLLMLTYDALRADDKHEL------KRYDWIQVDEVQDLNPLQL 288

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            ++   T   F          T+  +GDE+Q+I+SF GA+   +   +            
Sbjct: 289 ALVDGFTSSDF---------HTVMYLGDEQQAIFSFMGAKMSTLDALRER---------C 330

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
           +  +  L ++ RS   +L V +      E   G+ ++   T  +   R G    V     
Sbjct: 331 EGHVHRLFVNHRSPQYLLDVFN---VYAEQQLGIDKNVLPTTNYLPQRKGDELQV----- 382

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                    + +          L    +    A                           
Sbjct: 383 ---MDSVTIDSEYRDVADVVFRLQAADAKETTA--------------------------- 412

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
               V+V    D  +++     L   +           L     +K L+A    + ++ +
Sbjct: 413 ----VIVSANADAEMMSRALNDLSLSH----FKVSGDDLFASQGVKLLLAHLNVLANEHN 464

Query: 434 DLSFVCM 440
            + +  +
Sbjct: 465 FIGWSRL 471



 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 55/216 (25%), Gaps = 53/216 (24%)

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL---------ILGAKKGRQQFISRFG 522
           +       +F+   + + +        +    +           +   ++      S   
Sbjct: 700 QLEWIRHPRFKKRAEVLRKNYSDIYNAAKQRLYQREKPGDEPVLVREMQRFYAFLCSEKL 759

Query: 523 NEVIDVL--------DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
            E  D L        D+ ++  +    +    L   ++E+                 + +
Sbjct: 760 LEPQDKLHYVTQFLTDDIIDQAVA--PSLVEQLWAYVTEINTLKEADLCNSQTLQERIFV 817

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
            TVH AKGLE   V + D     + +                                  
Sbjct: 818 TTVHKAKGLEFDNVIIFDAVDGRYPN---------------------------------- 843

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                 +    E  R  YV MTRA  +L +   +  
Sbjct: 844 FYNQNNERLLAEDKRKFYVAMTRAKKRLYVAWSTTR 879


>gi|254682605|ref|ZP_05146466.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus
           anthracis str. CNEVA-9066]
          Length = 280

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 17/175 (9%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKS--QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           I K+   LK+              +++ N  K  K+        K +   +EE K++   
Sbjct: 165 ILKELR-LKDAYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNY 223

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +DF+D+++ T  +L+     A +  ++ Q  ++I +DE QDTS  Q+E+++ L  
Sbjct: 224 IDFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQDTSYAQYEIVKLLAS 275


>gi|187251692|ref|YP_001876174.1| ATP-dependent nuclease subunit B-like protein [Elusimicrobium
           minutum Pei191]
 gi|186971852|gb|ACC98837.1| ATP-dependent nuclease subunit B-like protein [Elusimicrobium
           minutum Pei191]
          Length = 994

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 81/715 (11%), Positives = 183/715 (25%), Gaps = 91/715 (12%)

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG---QVGTVQLWEQVVSQHDSQCNPQQE 327
           L + + V    +         T   +  S          + +  E   +           
Sbjct: 204 LEIFNAVRQNYKTIMFFPYRKTQAYKFTSKFFESNILGMSKETVELEPAPGVLGAAEDAL 263

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                      ++   I A  +   +       TI    +    +  +I +  R      
Sbjct: 264 FNHLISGEAENKNIRIISASGVNGELFA--AAKTILELTENNGYKFSEIALCAR---VLE 318

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
                   +    KI +  +  F L  H        L     +       + ++KS  F 
Sbjct: 319 PYKNNLINIFEQNKIPLNTSLEFGLLSHPLGIFCFNLLNLAHNGFYREDVLSVIKSQYFA 378

Query: 448 F--SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
              +   + +        E     I K      S F   +  +   +       P D  +
Sbjct: 379 VKNNWRALAQNSLVERGLEQWENLINKKDPAYDSSFLSFLTNLGTQLGFFNKPYPWDVLS 438

Query: 506 LI---LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISEL-EQYPPT 560
                +         ++     V + + + +    +       +  +E + EL E     
Sbjct: 439 KHAVKILEDFVDANILTEGEKTVFNTIVDTIIQINQFSLVRESAKEKEFLEELNEALKEQ 498

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                  +   V    V   +G    VV L+    +VF             +  +  +  
Sbjct: 499 SVGKVQNSELGVTAGDVMGLRGQHFKVVILLGVNEKVFPQ-----------IVREDPLLR 547

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
              +   R+  V       K    EE     Y  ++ A ++L +    +    K      
Sbjct: 548 DKFRRTLRD--VQGFWIGQKLDRFEEEKLFYYFTLSSAREKLFLSFQRSDEEGKAVVPSL 605

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE------NTPLEREETIKQLM 734
           +   V  +   +       ++    +  +   +   +  E      + P   E       
Sbjct: 606 YLTEVCRAAGIELEKNITNISRRELEKYFQTPQEFLNSKEMLTKIFSFPSVEENIKAAGF 665

Query: 735 DEQKIPKKLFSPIKNDINE--------------------PYILNPSTIDTKGKTNLESLL 774
           D   +     +                                + S +    +  +    
Sbjct: 666 DWDALASYYNAAKAMSARSSLGAYDGIVNYGDEIFSSLSKKGFSASALQNLAECPMRFFF 725

Query: 775 SDNQTFN---------------RGLIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLWPA 818
                 +               +G I HK+LQ +   +      +   +   K   L  +
Sbjct: 726 IKALGLDEEADILKRDAIASNIKGTIYHKILQRVYTEIDREISMDSALAALEKIMALEMS 785

Query: 819 KEY-----------KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI----NCPKKDII 863
            E            + +   +   L+  +     S + ++ V          +   ++I 
Sbjct: 786 FERYKEFGLYPVVWQVITEKMAAALQEFVKKDVESMEGFAPVMFEAAAAAKHDFAGEEIK 845

Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP--YTHIAQLSIY---EKILKD 913
           + G ID+I    +   I +YKT     ++++ +     ++ Q  IY      LK+
Sbjct: 846 LHGYIDRIDRRGKEYRIIDYKTSQRSVKDLKKVIFNKKYL-QPVIYWILASALKE 899


>gi|218662459|ref|ZP_03518389.1| DNA helicase IV [Rhizobium etli IE4771]
          Length = 247

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 32/204 (15%)

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            +++  +DF+ +I +   L++          +     + IL+DE QD S  +  +I++L 
Sbjct: 1   LEESQRIDFDSMIADAVRLVQT--------GRYQSPYSLILVDEFQDISEPRANLIKALK 52

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           +     K        +FAVGD+ QSIY F G++     + +                  L
Sbjct: 53  QQKAFSK--------MFAVGDDWQSIYRFAGSDITIFTQFEANFGASWQG--------RL 96

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++R    I     K           S  ST        R     ++++          
Sbjct: 97  EQTYRCNQLIAETAAKFVQRNPEQITKSVHST--------RAAVPRSIRVIPIDGKGGRP 148

Query: 321 QCNPQQESWTSYFDSLPQESSASI 344
                        D+  ++ ++  
Sbjct: 149 DFGLACHRILERLDAFLEDIASQW 172


>gi|294811705|ref|ZP_06770348.1| putative RecB family exonuclease [Streptomyces clavuligerus ATCC
           27064]
 gi|294324304|gb|EFG05947.1| putative RecB family exonuclease [Streptomyces clavuligerus ATCC
           27064]
          Length = 307

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 63/228 (27%), Gaps = 29/228 (12%)

Query: 748 KNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                 P  L+PS      +  L              +    RG ++H +L+ +F  P  
Sbjct: 26  AATGAPPVSLSPSRASDFMQCPLLYRFRVIDRLPERPSAAATRGTLVHAVLERLFDAPAA 85

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT-TAMSCDSYSEVSVSGKINCP 858
           +R                  +   L            +       ++  E   S +    
Sbjct: 86  ERTAGRARSLVPGQWDRLLADRPELGGLFEGDTGGERLAGWLAEAEALVERWFSLEDPTR 145

Query: 859 KK--------------DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            +               + + G ID++ ++    + I +YKT      E        + Q
Sbjct: 146 LEPAEREMFVEVGLDSGLRLRGVIDRVDVAPTGEVRIVDYKTGKAPRPEYSEGA---LFQ 202

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           +  Y  ++            L+Y+    V  +  + +      +  K+
Sbjct: 203 MHFYALVIWRLKKVVPRRLQLVYLGSGDV--LTYDPVPADLERVERKL 248


>gi|149235009|ref|XP_001523383.1| hypothetical protein LELG_05229 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452792|gb|EDK47048.1| hypothetical protein LELG_05229 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 607

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 91/616 (14%), Positives = 152/616 (24%), Gaps = 142/616 (23%)

Query: 66  FSLLSSFFLTQKFTPQ---KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           F   +S  L          K   +   +       +          +           ++
Sbjct: 85  FHSFASMLLEDNGAEYHAGKPPYSVLDDASWRSFADFFNAKPKILEQATLEVKDGASLEA 144

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                 +         +   +N ++ +  LI    +LL K D               ++I
Sbjct: 145 IAEKYAIPVKRFREIVDYMDQNGLVRYLGLISAAIELLDKSDGKLNTIANA----KVLII 200

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD        I  + +        H  P+ +   GD+ Q IY F G+ P       +
Sbjct: 201 DEFQDMQPSLLPFITKIAK--------HGIPKHITLAGDKNQYIYEFLGSRPSITEEFIK 252

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                    G     + L  SFR T +IL   D +   P   + +      T+   +   
Sbjct: 253 QL-------GFPVDRVFLNESFRLTPEILESADAII--PTEIRSMKNAGVKTVGQGNICT 303

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                V+L                    +  D                 TIS M+  +  
Sbjct: 304 DI---VELIALSGGILKFSDFMILVRSNAEVD-----------------TISEMLTKEYG 343

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
               K   +             D  L   +   L   Y                   D  
Sbjct: 344 IKCNKYNGLGW--------ANSDIHLFLDILHVLNKSYG-----------------SDFA 378

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC---GIS 479
            L                     F   + ++ KI T   +         +         +
Sbjct: 379 LLLML----------------KKFGMGKREVKKIFTNYKKWNKSSHNKLESFLKLTLEDA 422

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL-R 538
           +FQ  +  + +        +P      +    K    F      +    L +F +     
Sbjct: 423 RFQEFLNLLEQ--ERLGLDTPITIMGSLARITKKWNFFAQDKDLQ--QNLTDFYSSLKIA 478

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSA--NHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +      S     S   +Y            +H+ V + TVH AKGLE PVVF+ + G  
Sbjct: 479 HTNYLLDSRANSNSTFLEYFLRHYFDAEPILDHDAVNVSTVHKAKGLEFPVVFVPNNGRM 538

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                                                              +RL YV +T
Sbjct: 539 KLG-----------------------------------------------ESRLKYVALT 551

Query: 657 RASDQLIICKHSNTSN 672
           RA + L I       N
Sbjct: 552 RAKNFLYIGGERGEKN 567


>gi|291440630|ref|ZP_06580020.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291343525|gb|EFE70481.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 282

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 35/226 (15%)

Query: 753 EPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
            P  L+PS      +  L              ++   RG ++H +L+ +F  P  +R   
Sbjct: 2   PPASLSPSRASDFMQCPLLYRFRVIDRLPEKPSEAATRGTLVHSVLERLFDAPAAERTAP 61

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY------------------ 846
                         +    +        E   +   ++                      
Sbjct: 62  RAKALVPGQWERLRESRPEVAELFADDPEGERLARWLAEAERLVERWFTLEDPSRLEPAE 121

Query: 847 SEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
            E+ V  +++     + + G ID++ ++    + I +YKT               + Q+ 
Sbjct: 122 RELFVEAELDS---GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP---EYAEGALFQMK 175

Query: 906 IYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            Y  ++            L+Y+    V  +  + +      +  K+
Sbjct: 176 FYALVVWRLKKVVPRRLQLVYLGSGDV--LTYDPVPADLERVERKL 219


>gi|253751712|ref|YP_003024853.1| DNA helicase [Streptococcus suis SC84]
 gi|253755574|ref|YP_003028714.1| DNA helicase [Streptococcus suis BM407]
 gi|148925327|gb|ABR19651.1| putative helicase superfamily I [Streptococcus suis SC84]
 gi|251816001|emb|CAZ51618.1| DNA helicase [Streptococcus suis SC84]
 gi|251818038|emb|CAZ55827.1| DNA helicase [Streptococcus suis BM407]
          Length = 605

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 64/436 (14%), Positives = 129/436 (29%), Gaps = 91/436 (20%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
            +IR  +    + + +DE QDT+  Q+ ++++             S   L AVGD KQ+I
Sbjct: 197 EYIRKALQMTYDFVFLDEFQDTTYAQYNLLKTCFL---------GSSCKLTAVGDNKQAI 247

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
             + GA+P       R             +  +L ++ RS   ++               
Sbjct: 248 MRWAGAKPDIFPDYIRDF---------NSNEYQLLMNHRSVPKLVKF------------- 285

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                     H+               +   +  +    + +   + +   +       A
Sbjct: 286 ------QKEVHQILNSN-------HSSIQPNNYPEFQEGEITLFEFENESLE-------A 325

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             IA  I + I             I+  +I +L   ++     +       N   I    
Sbjct: 326 ELIANDIESKIQGG----------IRPSEICIL--AKQKVDDYSSKLITTLNSKGIKARI 373

Query: 407 N-DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP--LFNFS-EDDIFKICTQRHE 462
             +   L        L+ L      + D L +  +      +       D   +     E
Sbjct: 374 ENEYQELLKDPTCNLLLDLISCSQGKRDPLIWENISNFYGNINGIDEFTDELILAKSYKE 433

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +   I    +  I   + ++  I  +I               +  K+    F +  G
Sbjct: 434 IDNIVSDITYLISNFIPNEESMLNLIDCIIEK-------------IDEKRIISNFSTYNG 480

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              +D++ +  +  L  E +           L+              N + IMT+H +KG
Sbjct: 481 KSDLDIIVKNFSMLLYKEYSQTQG-----EWLDIVS------SFKGENSISIMTIHKSKG 529

Query: 583 LESPVVFLVDTGSQVF 598
           LE   V+ +      F
Sbjct: 530 LEYEAVYFLGLEDSAF 545


>gi|146320787|ref|YP_001200498.1| DNA helicase [Streptococcus suis 98HAH33]
 gi|145691593|gb|ABP92098.1| DNA helicase [Streptococcus suis 98HAH33]
          Length = 610

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 64/436 (14%), Positives = 129/436 (29%), Gaps = 91/436 (20%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
            +IR  +    + + +DE QDT+  Q+ ++++             S   L AVGD KQ+I
Sbjct: 202 EYIRKALQMTYDFVFLDEFQDTTYAQYNLLKTCFL---------GSSCKLTAVGDNKQAI 252

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
             + GA+P       R             +  +L ++ RS   ++               
Sbjct: 253 MRWAGAKPDIFPDYIRDF---------NSNEYQLLMNHRSVPKLVKF------------- 290

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                     H+               +   +  +    + +   + +   +       A
Sbjct: 291 ------QKEVHQILNSN-------HSSIQPNNYPEFQEGEITLFEFENESLE-------A 330

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             IA  I + I             I+  +I +L   ++     +       N   I    
Sbjct: 331 ELIANDIESKIQGG----------IRPSEICIL--AKQKVDDYSSKLITTLNSKGIKARI 378

Query: 407 N-DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP--LFNFS-EDDIFKICTQRHE 462
             +   L        L+ L      + D L +  +      +       D   +     E
Sbjct: 379 ENEYQELLKDPTCNLLLDLISCSQGKRDPLIWENISNFYGNINGIDEFTDELILAKSYKE 438

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +   I    +  I   + ++  I  +I               +  K+    F +  G
Sbjct: 439 IDNIVSDITYLISNFIPNEESMLNLIDCIIEK-------------IDEKRIISNFSTYNG 485

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              +D++ +  +  L  E +           L+              N + IMT+H +KG
Sbjct: 486 KSDLDIIVKNFSMLLYKEYSQTQG-----EWLDIVS------SFKGENSISIMTIHKSKG 534

Query: 583 LESPVVFLVDTGSQVF 598
           LE   V+ +      F
Sbjct: 535 LEYEAVYFLGLEDSAF 550


>gi|291613180|ref|YP_003523337.1| hypothetical protein Slit_0711 [Sideroxydans lithotrophicus ES-1]
 gi|291583292|gb|ADE10950.1| conserved hypothetical protein [Sideroxydans lithotrophicus ES-1]
          Length = 869

 Score = 91.5 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 65/594 (10%), Positives = 146/594 (24%), Gaps = 72/594 (12%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
             +S    AR  A  +   +                +DI ++        ++    R L 
Sbjct: 248 AATSLEQEARAAAMQVRLWLQAGK------------RDIAIV----AQDRVVARRMRALL 291

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
              +I V     +          L      + S       + +LKSP          +  
Sbjct: 292 ERAEIMVADETGWTFATLSVSTVLDRWLTALQSDFYHHDLLDLLKSPFIFADMTASERKS 351

Query: 458 T-------QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                    R +                +     +  + +   + +          +   
Sbjct: 352 AVYQLEQLLRKQGVVAGLEKFSALVEHETVLHQPLARLRQAAALLEQHKKRTLAEWLAAL 411

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAH 565
           ++  Q      G    D   + L      +Q   +        E    L Q   T     
Sbjct: 412 RESLQVLSIDSGLLQDDAGMQLLGALETWQQELTADEGRYRFPEWRRWLAQQLDTQTYRD 471

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
           ++  ++VR   +   +      V L+   +                   D G        
Sbjct: 472 NSIDSQVRFTHLAATRWRAFDAVLLLGCDADHLPS------------VADGGRWFNDAVR 519

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            S N     +    ++        L         D +++    + + E          + 
Sbjct: 520 SSLNLPTRAINAERQRDDLLSLLALN--------DCVLVTWQKDRNGEAGLLSPYLEILR 571

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                            +    E           +  P+ ++E I   +        +  
Sbjct: 572 DLHLLTWGDDLAESELPAYLAAEEARAVELPQSAQPAPVVQKEIIPTGVSISAYNSLVAC 631

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHKR 801
           P +        LN           L+ +    +  + G  +H +L    +    + EH R
Sbjct: 632 PYQFYARHILRLN----------ELDEVQEGIEKRDYGERVHAILQRFHERYPRVSEHSR 681

Query: 802 KNFITSYCTKNAKLW------PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
                +    + +++        +    L      L              +  V      
Sbjct: 682 DTMEVALRQISEEVFADLLQQDFEARAWLARWFKALPAYIEWQMVNEAQGWRYVESESAF 741

Query: 856 NCPKKDIIISGRIDQISISQQNIFIFEYKT--HHHVPQEIEHIPYTHIAQLSIY 907
           +   + + + GRID++ ++ Q   + +YKT     +  ++         QL+ Y
Sbjct: 742 DWELEGVRLRGRIDRLDMNGQQKRVLDYKTQSDQVLRNKLREPGED--VQLACY 793


>gi|315644606|ref|ZP_07897738.1| ATP-dependent DNA helicase UvrD [Paenibacillus vortex V453]
 gi|315280113|gb|EFU43410.1| ATP-dependent DNA helicase UvrD [Paenibacillus vortex V453]
          Length = 592

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 94/265 (35%), Gaps = 32/265 (12%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   K  ++  ED++     LL++  +   +   +  +  +I +DE QDTS IQ E+I
Sbjct: 185 YKQLFWKEGIIHHEDVLYFAYKLLEEYPM---LLDHLSSKYPYIFLDEFQDTSPIQTEII 241

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + ++           +   +  +GD  QSIY F GA  +  +            +     
Sbjct: 242 KKMS----------VTGTVIGVIGDPAQSIYKFQGASHQEFISF----------SLPNHI 281

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              +  + R  + I+  ++ + S  E  Q     +  T  H             ++ +++
Sbjct: 282 TYSIEKNRRCGSKIIEFLNHIRSGDELRQKPIAGAAETEVHFYEYNNN-----TYDHIIT 336

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
            H+ +      +                 A  +          D + S+ +K + +    
Sbjct: 337 FHELRSRLGLVNDYCILARNNDTVRQLRNAESMDI----WSAFDEVDSDREKFIKRILSA 392

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYK 401
             LVR  +    +  + + LK +  
Sbjct: 393 CKLVRDGRQELAVKEIIKALKTENG 417


>gi|293115646|ref|ZP_06604557.1| putative ATP-dependent nuclease subunit B [Butyrivibrio crossotus
           DSM 2876]
 gi|292809251|gb|EFF68456.1| putative ATP-dependent nuclease subunit B [Butyrivibrio crossotus
           DSM 2876]
          Length = 1105

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 74/651 (11%), Positives = 183/651 (28%), Gaps = 107/651 (16%)

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               I    +    +  DI V++    D       T  +  +  I    +++  L  +  
Sbjct: 333 AAAAILKEVRTHGYRFNDIGVIL---GDKDNFANETARIFKESGIPFFMDNKRSLIGNPM 389

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANC 476
           ++ +  +   I  +    +   +LK+ L  F  D +              ++   +    
Sbjct: 390 VEYIRGIIALIKERFSYEAVFRVLKNGLCGFERDKVNIFEDYILAFGINGFDRYCEKFVR 449

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE----- 531
                +  +  I+E+          +F++ +    K      + +     + L E     
Sbjct: 450 AYKSKEMGLDVINEVREDFCCL-ISEFYSDMTKGTKASDYVNAVYDFMEKENLYEEMKML 508

Query: 532 ----------------------FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
                                  L        +   +++E    ++     IK       
Sbjct: 509 ADNTEDEDKAEEFRKSYGHVVTLLERIYDMLGDEPMTVKEFAEIMDAGFEEIKVGIIPPS 568

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            + V +  +  ++     V+F++     +          +             +     +
Sbjct: 569 NDCVMVGDLERSRIDNIKVLFVLGANEGIIPKTGDNHGILSEDERMTLSDMQIVLSPTPK 628

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
             +                   LY+  TR  + L +       + K+        ++ D 
Sbjct: 629 EKVFMQNFY-------------LYLNFTRPENTLYLSYGRYNDDGKEIRPSRVIGIISDM 675

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL----- 743
           +        I        +   ++   + + +    + ++ +  ++              
Sbjct: 676 YDIKPYHPDIT---DFLTNRQNSFHLVSDYAKIKDYDADKNLAAVISYFVNDDVYGNIIK 732

Query: 744 ----------------FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT-------- 779
                               K   +E    + S I+T         L+            
Sbjct: 733 KIIDSFNENVMSDNLTKEAAKMLYSENLTASVSRIETYAGCAFSHFLTYGLGIGERQEHK 792

Query: 780 ---FNRGLIIHKLLQVI-----------FTLPEHKRKNFIT-SYCTKNAKLWPAKEYKNL 824
               + G I HK L+ +            +L + +RK+F+  ++    A    +   ++ 
Sbjct: 793 ITNIDIGDIFHKTLEYMGCTLMENGLNFGSLSDEERKDFVNVAFDKITADYKYSFFKESA 852

Query: 825 LLSITRL-LENPMMTTAMS------CDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQ 876
                ++ L + +  T  +        S+   +           + ++G+ID+I I S+ 
Sbjct: 853 ANEFLKMRLSDIVNRTVWAMGEQINAGSFIPAAFEHNFIRNINGMTVNGKIDRIDIASEN 912

Query: 877 N---IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE-KILKDSYPNKSLVCL 923
               I I +YK+  +     E I      QL IY  + LK+ Y   S+  +
Sbjct: 913 GSNYIKIIDYKSGENTI-SKEEILTGEKLQLLIYLDEALKE-YEKDSVKAV 961


>gi|225851300|ref|YP_002731534.1| hypothetical protein PERMA_1770 [Persephonella marina EX-H1]
 gi|225646576|gb|ACO04762.1| hypothetical protein PERMA_1770 [Persephonella marina EX-H1]
          Length = 921

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 81/600 (13%), Positives = 183/600 (30%), Gaps = 71/600 (11%)

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
            + +  +Y I    ++     D L  K +  L     +    +  +  +   + N  + D
Sbjct: 294 IKSVFQEYNIPYYLSEENRFIDQLPFKKMFLLFSLKENNFSKIDLLNSISKEILNIDDID 353

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           I        E      Y           +  +I  +  +  I +  S +D          
Sbjct: 354 ISSFEKDLIENSYEEGYESIIKLLSDKGYNGIIDLLRSIKKIPERGSLNDLIQ---NYTD 410

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-------YSSLQELISELEQYPPTIKRAH 565
             ++F  +      +  ++FLN     + N          +  E  S L  Y        
Sbjct: 411 IIERFFKKN-----EHTEKFLNILENIQLNHVLKKLYPEITYSEFNSILLHYLEEEDIDR 465

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               + V+I T + ++G+    +F VD     +             +  D  +     + 
Sbjct: 466 RLKGDIVQIRTPNISEGIIFDYLFFVDMNEGKYPS-----------IIKDDPVINNTLRV 514

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
           K     +  L     +          ++ +  +S  + I   +        +     + +
Sbjct: 515 KLEEKGLPKLNASYWQQII------TFISIFNSSKNIYISYKNRDDKGNDLSPSVLVEEL 568

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEW----STHHPENTPLEREETIKQLMDEQKIPK 741
               +     +        + +E    +     +  H  NT    ++ ++  +  +    
Sbjct: 569 LRLNYGRSYFENGDTLKLEDPEEITTLKEFRLKNAAHLINTDNLLKKVVEAHIKRESEYI 628

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD---NQTFNR-----------GLIIH 787
             +    N   +   L PS + T         LS      TF             G  IH
Sbjct: 629 TEYEGYVNVNPKYIKLTPSKLQTFSDCPYRFFLSSVINPDTFEIVDTERIPPDKEGTAIH 688

Query: 788 KLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEY--KNLLLSITRLLENPMMTTAMS 842
           ++L+ ++      + + +  I +   +  +    +      +      LL + ++T  + 
Sbjct: 689 EILEFVYRKRIKDKSRLRMIIPALVKEKFRPLLEELKPSARIFEEKRVLLLSDILTEFVI 748

Query: 843 CDSYS-------EVSVSGKINCPKKDIIISGRIDQISIS--QQNIFIFEYKTHHHVPQEI 893
            D          EV +  K +        +G+ID+           I++YKT      ++
Sbjct: 749 KDLERIRNIYIPEV-IEMKRSVNIYGFKFTGKIDRADRDLKNGKYIIYDYKTGKKRIDDL 807

Query: 894 -EHIPYTHIAQLSIYEKILKDSYPNKSLVC-LLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            + +      QL IY+K L+     K +    L+++ E     +   +L+K   E + K+
Sbjct: 808 RKALLKGEYLQLVIYKKFLES--SGKDVQKLGLLFIKENH-SEVS-TQLDKEIDEKTDKV 863


>gi|325680672|ref|ZP_08160210.1| putative ATP-dependent nuclease subunit B [Ruminococcus albus 8]
 gi|324107452|gb|EGC01730.1| putative ATP-dependent nuclease subunit B [Ruminococcus albus 8]
          Length = 1115

 Score = 91.1 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 94/795 (11%), Positives = 217/795 (27%), Gaps = 144/795 (18%)

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFR----STADILTVVDKV-------FSI 280
           A+   +   +++     T+         L +  R     T  +L   + V       F +
Sbjct: 186 ADINNLFDGRQVFVSAFTDFSYDERR-MLEICVRKAEKLTVSLLLDDNFVKRCRTHPFDV 244

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD--SLPQ 338
               Q    D                 V     ++   +   +  ++ + +  D   +  
Sbjct: 245 TVGTQQKLVDMAKDHNKEIRFTHAEDAVCESWDIMLLSERLYDLDRKEYHTANDSVQVMA 304

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                  A  I   I  ++ +         +     DI+V VR   D      +      
Sbjct: 305 ADDMYEEADYICAEICQLVSS---------KKYVYNDIVVAVR---DMSNFGSVIASALE 352

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGR-FILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            Y I    + R  +     +  +  + +  +  +    + + ++KSPLF     +I  + 
Sbjct: 353 KYDIPYFLDKRDSVDASAIVHYICNIFKTVLTRKFRTENILKLIKSPLFGLLNYEICDLE 412

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI----------AQFCSPHDFFTLI 507
                     +   +            ++ I++L             A   +  +  +L 
Sbjct: 413 DYCVRWGVDGDMWLEPFTAEPDGVG--LERINDLRAKVIEPLIKFKNACKDTTAEQISLA 470

Query: 508 LGAKKGRQQFI--------------SRFGNEVIDVLDEF----LNFTLRNEQNSYSSLQE 549
                G  +                +    E+   L +     L+               
Sbjct: 471 FYELLGELKISEQTYSLVKRVSTSDNESDLEMSRGLKQLWTMSLSAVKSIHNILGKEKIS 530

Query: 550 LISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           L S  + Y   + +   ++     + VR++    ++  E  VVF  +    +F       
Sbjct: 531 LRSYFDLYELMLSQMKVSSPPQKLDCVRVIDAGHSRIGEVRVVFAAEVNDGIFPSSVK-- 588

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                      G  +   +        + LI+    S         Y  +    D+L + 
Sbjct: 589 ----------NGGLMTEHEKNLLKLKENILIESNALSDLMHEKLAAYSVLCAPDDRLYVT 638

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                    +    +    V +     E+       +        AY     H  +    
Sbjct: 639 YSRADLLGNRKRPSSLVREVKEVLGVKEKSINTLPVDFFCTSMKTAYSKYIEHSRDNTAA 698

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILN-----------------PSTIDTKGKT 768
                  LM  ++  +KL +  + +  EP+ L+                 P+ +D   K 
Sbjct: 699 VSSIRDSLMVSREYYEKLSALKQANAKEPFRLSKESAKEAFFAGETAEVSPTKLDNYFKC 758

Query: 769 NL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP 817
                         S   D    N+GL+IH++L+   +      +     +   + +   
Sbjct: 759 PFMYFCNYGLHLSRSEKLDMDGLNKGLMIHEVLEKAISTENITPEESRRQFLEMDEEKIT 818

Query: 818 AK-------------------------EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS 852
                                       ++++      +++   +   ++  S++ V   
Sbjct: 819 ELVENSFNNYYSEVFCGDFGKTKTFVYRFESMKKQAFNIVK--YVQKELAAGSFAPVVTE 876

Query: 853 GKINCPKKD------------IIISGRIDQ---ISISQQNIF-IFEYKTHHHVPQEIEHI 896
            K+   + +            I++ G ID+   +    +    I +YK   H   ++  +
Sbjct: 877 YKLKNEEGEDHLDLTLKDGRHIVLIGTIDRADILEEDGKKYVRIIDYKFRKHAKFDLGEL 936

Query: 897 PYTHIAQLSIYEKIL 911
                 Q+ IY  IL
Sbjct: 937 YCGLNLQMLIYLSIL 951


>gi|317177172|dbj|BAJ54961.1| hypothetical protein HPF16_0364 [Helicobacter pylori F16]
          Length = 778

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 54/493 (10%), Positives = 134/493 (27%), Gaps = 82/493 (16%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L   +   S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKTLEDLETSSFDLSASPL----LDLENLTLALLEQQSSKEKAPLKETHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   + +VD     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L K+ K         L Y+    
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EMALSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++  + + +       L  S    ++   E    
Sbjct: 480 ----------------ESETSKVSNMLLELNLYIEPIKDAYTLFESTPLKDYQEEEIQAT 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++                 +   L    +   +       S  D              
Sbjct: 524 IPKDFSF----------SASSLNAFLTCKRRFYYHYIKRFKESPKDENNS---------- 563

Query: 778 QTFNRGLIIHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLE 833
                G ++H+ L          +  +  +         + P +    L+    I     
Sbjct: 564 ---AIGSLLHEFLKEAYEKDKNPYALEERLIQLLETKGNITPKERLDTLIALKKIQAFYV 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT------- 885
                          + +        + +   GRID+I  +    + + +YK        
Sbjct: 621 KE--KERFHAKIKI-LDLEKSFETTIQGVAFKGRIDRIDKTADNEVILLDYKFKSELKLD 677

Query: 886 -------HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                      P EI  I   +  Q++IY   LK+      +      + + K+    + 
Sbjct: 678 NMSEKQRGSLNPIEIAQISADY--QMAIYAFALKNLGYKGPIKAFFYDLRKGKLLEEEEP 735

Query: 939 KLNKAFAEISTKI 951
            L      + + +
Sbjct: 736 VLQAKMDYLKSSL 748


>gi|156934552|ref|YP_001438468.1| DNA helicase IV [Cronobacter sakazakii ATCC BAA-894]
 gi|156532806|gb|ABU77632.1| hypothetical protein ESA_02386 [Cronobacter sakazakii ATCC BAA-894]
          Length = 684

 Score = 91.1 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 80/288 (27%), Gaps = 42/288 (14%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
               +  D        ++   +                   L+   +             
Sbjct: 292 RVSELENDTAARHELLLNAWREQCREKKAQAKGWRQWLTDELEWDVEDGDF------WED 345

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L ++   + +     +        E +  + +E   +  +             + L  
Sbjct: 346 ETLGKRLASRLDRWLGLMRMHGGSQAEMIAAAPEEVRDLFQKR------------VKLMA 393

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   ++ A K    +DF  LI    ++L+K         +      HIL+DE QD S  
Sbjct: 394 PLLKAWKAALKAEEAVDFSGLIHQAINVLEK--------GRFVSPWKHILVDEFQDISPQ 445

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
                              +S  +LFAVGD+ Q+IY F GA+       +    +     
Sbjct: 446 --------RAALLAALRRQNSATSLFAVGDDWQAIYRFSGAQLSLTTGFEAHFGR----- 492

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                   L  ++R    I  + ++        +    +S       +
Sbjct: 493 ---GDQCALDTTYRFNGRIGDIANRFIQQNPYQREKPLNSLRAGDKNA 537



 Score = 43.0 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 22/140 (15%)

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             + L+  L+      +     L        +       A      ++  MT+H +KG +
Sbjct: 542 AQEQLEALLDKMSGYVRPDERILVLARYHHLRPAALEMAATRWPKLQLEFMTIHASKGQQ 601

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
           +  V ++            ++    P+        +  P     +               
Sbjct: 602 ADYVIILGLNEG-------REGFPAPARESIMEQALLPPPEDFPD--------------- 639

Query: 645 EEYNRLLYVGMTRASDQLII 664
            E  RLLYV +TRA  ++ +
Sbjct: 640 AEERRLLYVALTRARHRVWL 659


>gi|188586139|ref|YP_001917684.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350826|gb|ACB85096.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 575

 Score = 90.8 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 92/584 (15%), Positives = 179/584 (30%), Gaps = 78/584 (13%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT--------- 75
             Q  +  K     +  G P   K   +L +A      E   +     FL+         
Sbjct: 4   SKQQQEFLKAEGNCLVLGGPGSGKTTTSLIKAKNLIKNEHLKNEQKILFLSFARATIARV 63

Query: 76  --QKFTPQKNIITQEIN-KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
             Q    + ++I + I           + +S    +            ++     T+   
Sbjct: 64  EEQAGLYESDLINKSIEVNTYHGFAWNILRSHGYLLNSISPLKILPPQEACSRFSTIRDG 123

Query: 133 LNAHYEEAK--KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                E+ K  K+  V+DF+       +LL + D    +   I     +I++DE QDTS 
Sbjct: 124 KRRRKEKIKLFKEEGVVDFDLFAELCYELLSRSD---KLLNVISSSYPYIILDEFQDTSY 180

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            +W +I  L               TL A+ D  Q IY F GA+P R+    +  +     
Sbjct: 181 DEWRLINIL-----------GKRSTLVALADPDQRIYEFRGADPARISDYIKEFE----- 224

Query: 251 AGQKFSIIELPLSFRSTA-DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               F      ++ RS   D++   + + S     +  +  +   I++        G   
Sbjct: 225 ---PFQFDFASINNRSNGTDLIQFGNDLLS--GANKSKNYRNVKIIKYD--FKKGKGRHS 277

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
             +    +   +    +++W+           A          +SN +G+   F +G K 
Sbjct: 278 KLKYQTLKVRDKLRKHKKNWSLAILVPTNNLMAD---------VSNYLGSWQSFKSGNKL 328

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                 + V                  +    I +       + +   I DL+   R   
Sbjct: 329 PGLKHHVAV---------SKEGTLLAAELILGI-IENISLQSVNEDDIISDLVKYFRGRK 378

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
             +        L S L     ++  +    R +   +               +     I 
Sbjct: 379 GDKSPTQDELKLVSAL-----ENYLESEKIRGKNRKILIADISRIIKDSKNIELTGDPIS 433

Query: 490 ELIHIAQFCSPHD---FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
           +   + +     +   F  LI+ A   +  + +         L + +      E+NSY  
Sbjct: 434 DWHFVTEILKQSESKVFKDLIIDASNLKLLYRTSKM------LSKLVELWR--EKNSYVG 485

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            + +  +          A S   N + +MT+H +KG E   V +
Sbjct: 486 ARRVFQDFILQ--EHFIASSNEINGIHLMTIHKSKGKEFDEVII 527


>gi|218261884|ref|ZP_03476569.1| hypothetical protein PRABACTJOHN_02240 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223732|gb|EEC96382.1| hypothetical protein PRABACTJOHN_02240 [Parabacteroides johnsonii
           DSM 18315]
          Length = 261

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLT--------LAKYLNAHYEEAKKKNCVLDFE 150
           +L   Q      ++   TYK ++     +         L + +   Y+   ++   +DF+
Sbjct: 157 RLGMVQSRISNAKNALITYKAYEQNKELVQHDIDSKVPLLREIYKRYQNRCQQAGAMDFD 216

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           DL++ TN L +       +  K       +L+DE QDT+  Q  +++ 
Sbjct: 217 DLLLQTNILFRDHPD---VLEKYRSFFQFVLVDEYQDTNFAQHLIVQR 261


>gi|289568921|ref|ZP_06449148.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
 gi|289542675|gb|EFD46323.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis
           T17]
          Length = 320

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 73/262 (27%), Gaps = 52/262 (19%)

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
                  ++   EL          +    +L     R++  +    +    +D L+E ++
Sbjct: 32  EKAIAGFVEMFDELRGRL-DDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVS 90

Query: 535 FTLRN------------EQNSYSSLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTA 580
                            +         L   LE+            H    V +MT+HTA
Sbjct: 91  VAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTA 150

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE PVVF+      +F H                                        
Sbjct: 151 KGLEFPVVFVTGWEDGMFPHMRALDNPT-------------------------------- 178

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
                E  RL YVG+TRA  +L + +    S+  +         + +        ++   
Sbjct: 179 --ELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAP 236

Query: 701 TNSINKDEWIAYEWSTHHPENT 722
             S +     A  + +  P  T
Sbjct: 237 KPSFSAPVSGAGRFGSARPSPT 258


>gi|297198514|ref|ZP_06915911.1| RecB family exonuclease [Streptomyces sviceus ATCC 29083]
 gi|197716174|gb|EDY60208.1| RecB family exonuclease [Streptomyces sviceus ATCC 29083]
          Length = 283

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 35/230 (15%)

Query: 749 NDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                P  L+PS  +   +  L              +    RG ++H +L+ +F  P  +
Sbjct: 2   AAAVAPASLSPSRANDFMQCPLLYRFRVIDRLPEKPSAAATRGTLVHSVLERLFDAPAGE 61

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-------------- 846
           R   +             +    ++       +   +   +                   
Sbjct: 62  RTAPVAKSLIPGQWDRLRESRPEVVELFADDPDGERLAQWLGEAERLVERWFTLEDPTRL 121

Query: 847 ----SEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI 901
                E+ V  +++     + + G ID++ ++    + I +YKT               +
Sbjct: 122 EPAERELFVEAELDS---GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP---EYAEGAL 175

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            Q+  Y  ++            L+Y+    V  +  + +      +  K+
Sbjct: 176 FQMKFYALVVWRLKNVIPRRLQLVYLGSGDV--LTYDPVLADLERVERKL 223


>gi|254385059|ref|ZP_05000393.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194343938|gb|EDX24904.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 279

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 60/230 (26%), Gaps = 37/230 (16%)

Query: 750 DINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
               P  L+PS      +  L              +    RG ++H +L+ +F  P  +R
Sbjct: 2   SAARPSSLSPSRAGDFMRCPLLYRFRVIDKLPEKPSAAATRGTLVHAVLERLFDHPAEER 61

Query: 802 KNFITSYC----------------TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
                                       +          L     L++          D 
Sbjct: 62  TAPRAKALIPGQWDRLLEAKPELSELFPEGDEGAGLARWLTEAEALVD----RWFTLEDP 117

Query: 846 YSEVSVSGKINCPKK---DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI 901
                V  +     +    + + G ID++ ++    + I +YKT               +
Sbjct: 118 TRLEPVEREFFVETELESGLRLRGIIDRVDVAPSGEVRIVDYKTGKAPRP---EYAEGAL 174

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            Q+  Y  ++            L+Y+    V        +     +  K+
Sbjct: 175 FQMKFYALVVWRLKGVVPRRLQLVYLGSGDVVTYDPVVAD--LERVERKL 222


>gi|284007550|emb|CBA73069.1| DNA helicase IV [Arsenophonus nasoniae]
          Length = 684

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 76/234 (32%), Gaps = 31/234 (13%)

Query: 73  FLTQKFTPQKN----IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS-- 126
           FLT++             +++ ++     +            +   +             
Sbjct: 328 FLTRELAWDIANGEFWHDKQLAERVVVRLDNWLNLLRRHGGSQKTISELATPVENKQLQM 387

Query: 127 -LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            L L   +   ++   K    +D   LI    +LL K         K      +ILIDE 
Sbjct: 388 ELRLVAPIIKIWKSTLKAEGAVDSLGLIHQAINLLHK--------GKFISPWKYILIDEF 439

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD S ++ ++++ L           +    LFAVGD++Q+IY F  A+   +   +    
Sbjct: 440 QDLSPLEMQLLQLLR--------AQNRQTHLFAVGDDEQAIYRFPAAKLNLMASFEYYF- 490

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                     +   L  ++R    I  + ++      + Q     S      +S
Sbjct: 491 -------ASGAYYTLETTYRFNDYIAKIANQFIQKDRDQQIRPLKSVVKANKKS 537


>gi|291544541|emb|CBL17650.1| ATP-dependent nuclease, subunit B [Ruminococcus sp. 18P13]
          Length = 1115

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 102/971 (10%), Positives = 226/971 (23%), Gaps = 195/971 (20%)

Query: 31  INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEIN 90
                    +       + A  L +           S  SS F       +K        
Sbjct: 64  FTSLARALFQQYGGRSGEYADDLTKTILLYQSIRALSD-SSAFSHFDRQAKKPAFQDAAA 122

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF- 149
           K   +L+      +           T ++             L   Y+   ++    D  
Sbjct: 123 KAITELR------RGSISPEALLEQTARLEGRLRDKAADLAVLYGDYDRQLREKGYKDSL 176

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D I     L    +               + +DE +  +  Q E +  L         T
Sbjct: 177 TD-ITEAAALCAGNEHFKGAL---------LFLDEFESFTGDQMEFLDVLFAQAKELWIT 226

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +        D +   YS             R     A   G    ++     FR    
Sbjct: 227 LRTE-------DPEAPAYS----VFDATNATYRRLLALAQKHGTGHEVLLCKEPFR---- 271

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
                                    + H S  I +    QL                   
Sbjct: 272 --------------------FRYPDLAHISRSILRPVHTQLP------------------ 293

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
           T+    + +  +    A      I  ++             ++  DI ++          
Sbjct: 294 TAEHIHVFEAKNCYTEADCACAHIRKLVREQ---------GVRYADIAIVTH---QLEEY 341

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF-VCMLKSPLFNF 448
             +       Y I    + +        ++ +  +   I  +       +   K+ L   
Sbjct: 342 AGILESACIRYSIPFHLDRKISCMHTALLQLMSGVLELISEKRPRTETLLRYAKTRLLGI 401

Query: 449 SED---DIFKICTQRHETETVYEYIQKFANCGISKFQ----HVIKYIHELIHIAQFCSPH 501
           S +    +   C   +    ++           S  +     +++ I +L    +  +  
Sbjct: 402 SCERTARLESYCYTWNVDGMMWLEPFTAGLEENSDLEALRLELVEPIMQLREACRGQNVR 461

Query: 502 DFFTLILG---------AKKGRQQFISRFGNEVI------------DVLDEFLNFTLRN- 539
                +              G  Q     G                DVLD   N      
Sbjct: 462 TLCKNLYQFLCRMNVPKNISGIAQDYQEAGCTAEASALKALWGSLADVLDALCNVLGDAV 521

Query: 540 -EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              + +  L +                  + + V + +  TA+      VF++      F
Sbjct: 522 LPTSRFRDLMQ-----ALLSRISYSTPPQSLDAVLVASAETARLNAPKYVFVLGVSEGFF 576

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +         +                +       +    +    +   + Y  ++ A
Sbjct: 577 PSQVHSTGLFTDADK-------------QQLEARELFLSRSTEQLIGDERLIAYKTLSSA 623

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN-----------------DERVKKIKLT 701
           SD L +    + +     +       + D F                         + + 
Sbjct: 624 SDGLYLFYPLSDAAGSSRSPSALIQQIRDMFDAPMLRIAEQEDPCMYAATPRAAYDLTVQ 683

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                    A        +     R  ++  L    +        I+    +   L+ + 
Sbjct: 684 GFYRHTTEGASIREALKSDPVYGPRLASLDTLALTPEHRIAHTERIRELFGDRLYLSATR 743

Query: 762 IDTKGKTNLE-----------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKR------KNF 804
           ++T      +               +      G ++H  L+ + T    K       +  
Sbjct: 744 LETYNLCPFQYYMNYGLGIRADQKKEINPLETGNLVHYCLEQLLTGCPDKESFDALTEAE 803

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLEN------------PMMTTAMSCDSYSEVSVS 852
           +T+   + A  +  +          R   N              +   +S  ++  VS+ 
Sbjct: 804 VTARVEQYAAQYLEQAMGGSFGKDARFASNYRRITGSIPPLIRHLQQELSQSAFRPVSME 863

Query: 853 GKINCPKKDIIIS------------GRIDQI--SISQQNIFI--FEYKTHHHVPQEIEHI 896
            K++     I ++            G+ID++         +I   +YKT      ++  +
Sbjct: 864 LKLSRQDGSIPVTLTTPSGIQLILGGKIDRVDLYEENGTRYIRVIDYKTGK-KEFDLGKL 922

Query: 897 PYTHIAQLSIY 907
            Y    Q+ +Y
Sbjct: 923 LYGVDMQMLLY 933


>gi|207110199|ref|ZP_03244361.1| helicase [Helicobacter pylori HPKX_438_CA4C1]
          Length = 124

 Score = 90.8 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 2/102 (1%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV--SAWIRYKIDQEINHILIDEVQDTSL 190
               Y++A  K   LDF+ +    + LL   +   + +  +++D +I HILIDE QDTSL
Sbjct: 13  FIQLYDKATSKIQALDFDAIKDKVHVLLNGYEEMPAEFFYFRLDSKIAHILIDEFQDTSL 72

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             ++++    ++   G       R++F VGD KQSIY+F G+
Sbjct: 73  NDYKILAPFIDEIKAGIGQAKWHRSVFFVGDVKQSIYAFRGS 114


>gi|319950043|ref|ZP_08024011.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
 gi|319436293|gb|EFV91445.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
          Length = 445

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 96/361 (26%), Gaps = 43/361 (11%)

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V +      V+     +   +      D  + +            ++       +  
Sbjct: 1   WRAVAVCGVQDGVWPAPRRRSGLL----GVDELVDLTEIAGDGPVPSEAERAVSSAAARS 56

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            E  RL YV  +RAS+ L++    +      +  R   ++   +                
Sbjct: 57  AEERRLFYVACSRASEHLLVTAVESPEEGDVAPSRFIDEIADLATTATAVASPGTPVGPS 116

Query: 705 NKDE--------WIAYEWSTHHPENTPLEREETI------KQLMDEQKIPKKLFSPIKND 750
                        +    + H P   P +           +     +  P+  F   +  
Sbjct: 117 RHAPTVFSLPHLAVDLRAALHDPSTDPADARHAAGLLAGLRDAGVGEADPRTWFGATEPS 176

Query: 751 INEP----------YILNPSTIDTKGKTNLESLLS----------DNQTFNRGLIIHKLL 790
            + P           +L+PS      +  L   L                 RG  +H L 
Sbjct: 177 TDAPLTPDAPDRPIAVLSPSGFGALEECPLRWFLQSVGGDSSDAGSAAPLVRGSAVHALT 236

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
           Q +    +            +   L      +    ++  + E      + + D Y+  +
Sbjct: 237 QAVEGGIDEDTIRSAVRRRAEALTLSRGWFAERGAETMVEMAETFRRWRSSTRDEYTTAA 296

Query: 851 VSGKINCP-KKDIIISGRIDQISISQQNIFI-FEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           V           + + GRID++  +     +  + KT      + +        QL++Y+
Sbjct: 297 VEEPFEFDAGGGVRVRGRIDRLEATSAGQVVPVDVKTSAAAASKKDAAVN---PQLALYQ 353

Query: 909 K 909
            
Sbjct: 354 L 354


>gi|225570786|ref|ZP_03779809.1| hypothetical protein CLOHYLEM_06889 [Clostridium hylemonae DSM
           15053]
 gi|225160248|gb|EEG72867.1| hypothetical protein CLOHYLEM_06889 [Clostridium hylemonae DSM
           15053]
          Length = 1116

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 78/699 (11%), Positives = 198/699 (28%), Gaps = 120/699 (17%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  +A  + N++ T         +  + ++I V+     D            + Y I
Sbjct: 319 EEEALAVAGRVRNLVRT---------KGYRYREIGVIA---SDMNTYGDYLEQAFDMYGI 366

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--- 459
            V  + +  +  +  ++ + +L   +  +    S    L++ L  F+ +++ ++      
Sbjct: 367 PVFMDHKRSILLNSFVEYIRSLLHMVQQRFSYESVFRFLRTDLAGFTGEEVDELENYVLG 426

Query: 460 ------RHETETVYEYIQKFANCGISKFQH----VIKYIH----ELIHIA-----QFCSP 500
                 R   E     ++      + +  H     ++ +      L            + 
Sbjct: 427 LGIKGYRKWQEKWVRRLKGMKEEDLGRLNHYRTVFVEKVDGFNYVLRQRKKTVRDITMAV 486

Query: 501 HDFF------------TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
           +DF                          ++R   +V  ++ E  +  +    +   SL 
Sbjct: 487 YDFMVQEELQVKLKRQEEAFQRSGELA--LAREYAQVYRIVLELFDKFVALLGDEPVSLD 544

Query: 549 ELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           E I  L+      +      + ++V    V   +  +   +F V                
Sbjct: 545 EYIKLLDAGLEEARVGVIPPSPDQVVAGDVERTRLKDIKALFFVGANDSFLPG------- 597

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                    G  +     +  +     L    K+    +   L Y+ +T+ SD L +   
Sbjct: 598 -----ALGQGGLLSEHDRQQFSKEKLALSPGSKEKAYIQKFYL-YMNLTKPSDLLEVYYS 651

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE-WIAYEWSTHHPENTPLER 726
             +S+ + S        +   F +     + +    + +     A         +  ++ 
Sbjct: 652 KVSSDGRSSRPSYLIQELRRLFPHLSVEDEEEKELHLQEMTKETAVSRLIDGLGSADIQA 711

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINE---PYILNPSTIDTKGKTNLESLLSDNQTFNR- 782
           +   K+L    +   +    ++  I      Y ++  T     +   ++         R 
Sbjct: 712 DAGWKELFSWYRRSPEFKDRLERLIEAGYYTYTMDGLTRSAAKRLYGDTFEDSITRMERY 771

Query: 783 ----------------------------GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                                       G + H  L+      E   +++      +  +
Sbjct: 772 STCAFAHFLTYGLGLTERQEYEFQAVDLGNVCHSALEKYSKRVEEAGRDWTDISDGQQRE 831

Query: 815 LWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYS--EVSVSGKINCPKKDIII 864
                  + +      +L +          M   +S   ++  E   +G       ++  
Sbjct: 832 WVEQSVEEAVTDYGNSVLYSSARNEYMIGRMKRMLSRTIWALTEQLSAGDFKPAGYELRF 891

Query: 865 -SGRIDQI--SISQQNIFI--FEYKTHHHVPQEIEHIPYTHIAQLSIYEKI---LKDSY- 915
            +G+ID++        I++   +YKT      +I  +      QL +Y      L+    
Sbjct: 892 ANGKIDRVDTCEDGGKIYVKVLDYKTG-MKAFDIVSLYEGLQLQLMVYMDAAVKLEQRRN 950

Query: 916 PNKSLV--CLLIYVSEPKVFIIP---QNKLNKAFAEIST 949
           P K +V   +  Y  +  +       + +      E+  
Sbjct: 951 PGKEVVPAGVFYYRIQDPLVEKSEGEEERREAVLKELKP 989


>gi|118399025|ref|XP_001031839.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89286173|gb|EAR84176.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1961

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 64/539 (11%), Positives = 127/539 (23%), Gaps = 89/539 (16%)

Query: 157  NDLLKKRDVSAWIRYKIDQ------EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
              L  +R+        I +      +  +   DE QD S +Q+E++              
Sbjct: 797  VLLFSQREYCDIWLAHIKKYKFQYLQYKYFFFDEFQDVSELQYEILMEF----------K 846

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                 L  +GD+ Q+IY F   +   +   +           +      L  ++RST  I
Sbjct: 847  KLNCILTVIGDDAQNIYGFRDTKIDII---QNRINDDLKKKKKDLLEFRLTANYRSTHLI 903

Query: 271  LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
                +K+    EN    +  S   I          G  +  +           P    + 
Sbjct: 904  TKFANKIIEKNENLIKKTMQSAQEI---------HGETEEEKMKSKYDKEGDYPYLHIF- 953

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                      S       I   I +++         K +  Q KDI ++           
Sbjct: 954  ---------DSEKQQNESIIKRILSLV---------KNKGFQFKDIAIIGPMNDQLKKFE 995

Query: 391  FLTRFLKNDYK----ISVVGNDRFILTDHLAI--------------------KDLMALGR 426
             +             I           D   I                    K L     
Sbjct: 996  EVVEKHNQKSIQSDQIPYQAFITLKFEDFKLIEFNAAPQKQNKLTISTIHRSKGLEWDIV 1055

Query: 427  FILSQEDDLSFVCMLKSPLFNF-----SEDDIFKICTQRHETETVYEYIQKFANCGIS-- 479
            + L   DD   +  ++            +  +F +   R   E  +  I K         
Sbjct: 1056 YFLGCNDDQFPMAFVQKNKNQACTILEEQRRLFYVGATRAIKELNFCCIVKEPEKMKEKD 1115

Query: 480  ------KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                  K       I       +     DF   I+   K  +   S+ G E      +  
Sbjct: 1116 KMQGKFKVTRFFADIP--REYYRADIILDFQDHIIKDYKWIEFDESQNGEE-EQNCIKIR 1172

Query: 534  NFTLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                +        +      +  E+   ++         +V+   + +  G+      + 
Sbjct: 1173 EVISKMNSKQLEDINTFTQNIVQEKVVKSLYMEKHEISQQVKDNQLFSEMGMFFDRCIVR 1232

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
              G +  +            +                    S        +  ++   +
Sbjct: 1233 MIGEKYKAKNSFYNQVAAQVILPQIYELHLPENLFRLFLRYSKFFTTFDSAQLDDQRNV 1291


>gi|254457248|ref|ZP_05070676.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
 gi|207086040|gb|EDZ63324.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
          Length = 783

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/521 (11%), Positives = 152/521 (29%), Gaps = 66/521 (12%)

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
               FNF+  + +       +  +  + I++ +    ++ + V   I++ ++   +    
Sbjct: 286 NKSNFNFAMGEPYSKTNIYEKLNSSCKAIEQLSQENSARLERVGDEIYKELYSIYYKKVE 345

Query: 502 DF-FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
           +      L +   + +          + +    N  L  ++ S  SL  L          
Sbjct: 346 EVDIIKYLYSFLEKSEVTKVEKKIFNEQVYTLKNILLSMKEMSVKSLISLF----LQRLA 401

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                     +V +M V   + ++   V +VD        +  K M +  ++ +   +P 
Sbjct: 402 SATIDDVRGGKVTVMGVLETRAIDFDAVVIVDFNDGNVPRRSDKDMFLNTNIREMANLPT 461

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
              +   + +    LI                     +S ++ I    +  +      + 
Sbjct: 462 MSDRENLQKHYYEMLIN--------------------SSKEVAISFVESQQSSASRFLKH 501

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
                 +     +    +                     ++ P  +EE    +    K  
Sbjct: 502 LGIKAKNEHEELDYAGVLF-------------------DKSAPALKEEKKIAMEYSFKDV 542

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEH 799
           K   + +K  +          I+      +   +        G  +H+ L ++      +
Sbjct: 543 KLSATKLKTFLTCKRKYYHKYIEHINSHEIPKDMPAEY--EVGTAVHEALKELYTKRNSY 600

Query: 800 KRKNFITSYCTKNAKLW--PAKEYKNLLLSITRLLEN------PMMTTAMSCDSYSEVSV 851
              + +              ++  K L+    R L+                    E S+
Sbjct: 601 LSVDDLKRDLNNELDDVCGASELDKYLIEMQKRRLDTFCEKEVERFADGWQVKE-CEKSL 659

Query: 852 SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           S         + +SG ID++ +   ++F+ +YKT  +     +  P     QL  Y  + 
Sbjct: 660 SCDFA----GMQLSGVIDRVDVKDGDMFVLDYKTGSYPLYTAKTFPDATDFQLEFYYLLA 715

Query: 912 KDSYPNKSLVCLLIY-VSEPKVFIIPQNKLNKAFAEISTKI 951
                   +     Y + + K+   P++ L +    + + I
Sbjct: 716 STLG---KVSACGYYDLKDSKIV--PESFLEEKLEILQSNI 751


>gi|315656387|ref|ZP_07909276.1| putative UvrD/REP helicase [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
 gi|315492946|gb|EFU82548.1| putative UvrD/REP helicase [Mobiluncus curtisii subsp. holmesii ATCC
            35242]
          Length = 1164

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 97/954 (10%), Positives = 240/954 (25%), Gaps = 151/954 (15%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            + A+  + + +    L+   L  +   +  + TQ   +   DL + + + +     +   
Sbjct: 131  RLATDAEVMVQIQDFLAGMPL--EEELRAALETQGFRR---DLVDGIFRVRAFAGDVSSD 185

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV-LDFEDLIINTNDLLKKRDVSAWIRYK 172
                 +       +   +          +++   LD       T  L ++  ++      
Sbjct: 186  SAASPVHPLVTRLIQAMQADREAKRSQARQSAWPLD-------TASLFEEYLLAVKAGAP 238

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            + +    + ID++Q+ + +  +++                  TL A    +  + +F GA
Sbjct: 239  VPE---LVGIDDLQNFNGLMIDILSLWATH----------GTTLVACTLPETCVNTFRGA 285

Query: 233  EPKRVLREKRINQKRATNAG------QKFSIIELPLSFRSTADILTVVDKVFSIPENAQ- 285
             P    R  +  +             Q+     L  ++R        V+++     +A+ 
Sbjct: 286  SPHLSERLWQQLETIPGKGAIEILLTQEHVPAPLRQAWR------IAVNRLGVHGISARL 339

Query: 286  -GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP---QQESWTSYFDSLPQESS 341
                ++S+       S     G  ++     S   +Q        +    + D   + S 
Sbjct: 340  WNSIQESSPASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQ 399

Query: 342  AS------ILARRIAYTISNM-------IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
             +        AR++A  + NM         T  +      R +      V V       L
Sbjct: 400  MAVLTRSSREARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKL 459

Query: 389  ITFLTRFLKNDY--KISVVGNDRFI-----LTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                   L +       V    R       L          A G   +    D +     
Sbjct: 460  SDLDLAGLLSSALVGWDVWRMRRMDSSLYDLRLQPPADSENAAGSTGVMDSADTADDEEG 519

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH-----IAQ 496
               +          +                     I     ++     L        A 
Sbjct: 520  GIQIVGNLPYIQQFLRQVISGQNDFSGRSVAEIISAIPDAAQLVDLAQALRSGWQQWKAD 579

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVI------------DVLDEFLNFTLRNEQNSY 544
              S       +       +   +R     +            D++ +        E  + 
Sbjct: 580  SGSVQLLLWKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNP 639

Query: 545  -SSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              +  +    +             +   + V +++         P+V +V      +   
Sbjct: 640  GKTAADFAQGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWPLVAVVGLTDGNWPAM 699

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                  +  S+ +          S +                 +   R  +  +TR + +
Sbjct: 700  RWPGSILGSSMFELENYGDPTNSSSAGYLW-----------NWQNEYRHFFTALTRCTQR 748

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK---KIKLTNSINKDEWIAYEWSTHH 718
            LI+   +     + +   +    +        R+    +  +             W T  
Sbjct: 749  LILGTTAQDGVGRSTFLTSLVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPT 808

Query: 719  PENTPLEREETIKQLMD-EQKIPKKLFSPIKNDINEPYI----LNPSTIDTKGKTNLE-- 771
             +              D     P+     +    +E       +  S ++   +  L+  
Sbjct: 809  IDAPTAAGLLAKLAAGDCPSAHPENWMGALPVSGDETESAEIHIYASGLERALENPLDYV 868

Query: 772  --------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP---AKE 820
                               G I+H+  +++              +   +         + 
Sbjct: 869  LSWSGYSNDEDDPYAANKVGNIVHEAAEILGR----------RYWWEGHGPRDDLEFEQV 918

Query: 821  YKNLLLSITRLLE----NPMMTTAMSCD------------------SYSEVSVSGKINCP 858
               L   + RLL     +  + +                       S  EV    ++   
Sbjct: 919  LTELRQEVRRLLGPLSGDTWVESNFRRHIETCLVPLATFLVNHQYPSRFEVRYPCRLEAS 978

Query: 859  KKDIII--SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
                 +  + RID++  +   + I +YKT +        +      QL++Y+  
Sbjct: 979  SGKGALVYNARIDRVMFAHGRVIIMDYKTGNPSNFSAAKVAAN--LQLALYQAA 1030


>gi|291548282|emb|CBL21390.1| ATP-dependent nuclease, subunit B [Ruminococcus sp. SR1/5]
          Length = 809

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/683 (9%), Positives = 182/683 (26%), Gaps = 134/683 (19%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                  A  I+ ++           +  +  +I V+     +      L + +     I
Sbjct: 8   QKEMEEAARRIARLVRE---------KGCRYGEIAVIT---GNLEEYGNLAKQVFTAAGI 55

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--- 459
               +++  +  +  ++   A     +      S    L+  +   + ++   +      
Sbjct: 56  PYFIDEKHTVLMNPFVEYFRAALEMAVQDFSYESVFRYLRCGMSCVTREEADLLENYVLA 115

Query: 460 ------RHETETVYEYIQKFANCGISKFQHVIKYIHE---------------LIHIAQFC 498
                 +   E      +      I +   + +   +               +     F 
Sbjct: 116 LGIRGFKKWDEVWVRIYRGMPPESIQRLNEIRQRFADETRELALSFKGGKKTVREYCTFL 175

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVID--------VLDEFLNFTLRNEQNSYSSLQEL 550
                 + +    K ++      G++ ++        ++ E L+  +        + Q+ 
Sbjct: 176 YEFAVRSQVQQKLKHQELKFKEQGDKAMEKEYAQIYGIVMELLDNMVEILGEETVNRQDF 235

Query: 551 ISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
              LE      K A      ++V +  +   +  +   +F V                  
Sbjct: 236 RQLLETGLNQAKVALIPPSMDQVLVGDMERTRLKDIRALFFVGVNEGNIPKNTS------ 289

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                  G+   I +   ++  +       +    +     LY+ MT+  + L +    +
Sbjct: 290 -----GGGMLTEIDREFFKDQGIQLAPGPKELMNMQ--RFYLYLNMTKPRELLCLSFCQS 342

Query: 670 TSNEKKSNQRT---------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            S  K  +                +       E ++ ++L                +   
Sbjct: 343 DSQGKALSPAFLVSNIREMFPEMEIRQCGDMQEPMELLELPGISLDYFLRGLAGEAYQDN 402

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDIN--------------EPYILNPSTIDTKG 766
               E      Q  + + + KKL     ++                E    + + ++   
Sbjct: 403 AVFQELYSWYLQSPEYRILVKKLTEASFSERPSDKIGKTVAKILYGEISPYSATRLERFA 462

Query: 767 KTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
                          E    + +  + G ++H  L+        +  ++           
Sbjct: 463 ACAFAHFLQYGLKVTERAEYEFRAMDMGNVMHMALEKFAAEVRKEGLDWAE--------- 513

Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS-------------------GKIN 856
              +E   ++ S    +      T +   + +E  +                    G   
Sbjct: 514 LTEEERNRIIDSCLDQVSADYGNTILKSSARNEYMIERTRRILRRTVWALQEQLKHGAFR 573

Query: 857 CPKKDIIIS-GRIDQISI----SQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
               ++    GRID++ I        ++  + +YKT  +   ++  + +    QL +Y  
Sbjct: 574 PEGFEVRFQGGRIDRVDIMEEPENNRVYVKVIDYKTG-NTSFDLLALYHGLQLQLMVYLD 632

Query: 910 -ILK---DSYPNKSLV--CLLIY 926
             L+     YP++ +V   +  Y
Sbjct: 633 GALQVEKRKYPDREIVPAGVFYY 655


>gi|289648672|ref|ZP_06480015.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 813

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 97/334 (29%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +  ++ + ++H++IDE QD S      IR+   +         + R     +
Sbjct: 504 TSPENLKHVSDQMLRPLSHLMIDEFQDVSPQIVSWIRASLGEIRRRGPALHTGRIAQHSS 563

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   R             + + L  +FRS   I+   +
Sbjct: 564 LLCVGDDWQSIYGWRGSSPKYFMEFAREFS------SPATTRVMLSDNFRSHQHIIDAAE 617

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G              R   +    L  +V+ + + +   +     +  DS
Sbjct: 618 HIVRAAPAIAGKKA-----------RASGMPQELLPVKVLDRDEDELAERVAEHYNDGDS 666

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +           R +  +  +I  D       +R+             K           
Sbjct: 667 ILLLYRKGSEKSRFSERLKALIDADAAMGAQGRRIRTLT-----YHSSKGLQADAVFLLG 721

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L     + DL           D      +L+      +      
Sbjct: 722 DCQHLTVSPYKNQVYRLAGLGDVSDL--------QPFDTAQKDEVLRLAYVAITRAARHC 773

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                  T          A+  I++ +   + + 
Sbjct: 774 YWYIDQGTGGGENAQMPKASDRIAQDKPFFEDLR 807


>gi|300858460|ref|YP_003783443.1| hypothetical protein cpfrc_01043 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685914|gb|ADK28836.1| hypothetical protein cpfrc_01043 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206173|gb|ADL10515.1| RecB family exonuclease [Corynebacterium pseudotuberculosis C231]
 gi|302330730|gb|ADL20924.1| RecB family exonuclease [Corynebacterium pseudotuberculosis 1002]
 gi|308276413|gb|ADO26312.1| RecB family exonuclease [Corynebacterium pseudotuberculosis I19]
          Length = 303

 Score = 90.4 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 71/236 (30%), Gaps = 34/236 (14%)

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFT 795
             P K    +   L+PS  +   +  L                   +G ++H +L+ +  
Sbjct: 30  SQPPKEAAPKRLALSPSRANDYQQCPLLYRFRAIDKLPEPKTVAQVKGTLVHAVLEEMHE 89

Query: 796 LPEHKR--KNFITSYCTKNAKLWPAK-EYKNLL--LSITRLLEN--PMMTTAMS------ 842
            P  +R     +     + AK+     E + L+        L     ++           
Sbjct: 90  WPREQRLYPAAVKRLKPQWAKMCSEDSELEELVPEDKTYDFLVECRSLLRGYFEMENPQG 149

Query: 843 -CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900
                 E+ +S ++      + + G ID++ I+    + + +YKT               
Sbjct: 150 FDAHECEMYISAELP---NGVPVRGFIDRVDIAPTGEVRVVDYKTGKKPIPRFSQQA--- 203

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIY---VSEPKVFIIPQNK--LNKAFAEISTKI 951
           I Q+  Y  +    Y        L+Y        +    +      +   E+  KI
Sbjct: 204 IFQMRFYALVYWRLYGKIPDQLRLMYLKVTDSMFLMPSKEELEYFERDLGELWQKI 259


>gi|260597363|ref|YP_003209934.1| DNA helicase IV [Cronobacter turicensis z3032]
 gi|260216540|emb|CBA29752.1| Helicase IV [Cronobacter turicensis z3032]
          Length = 684

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 83/288 (28%), Gaps = 42/288 (14%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
               +  D        ++   +                   L+                 
Sbjct: 292 RVSDLENDTTARHELLLNAWREQCREKKAQAKGWRQWLNDELEWDVDDGDF------WED 345

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             L ++   + +     +        E +  + +E  ++  +             + L  
Sbjct: 346 EALGKRLASRLDRWLGLMRMHGGSQAEMIAAAPEEVRELFQKR------------VKLMA 393

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   ++ A K    +DF  LI    ++L+K         +      HIL+DE QD S  
Sbjct: 394 PLLKAWKAALKAEEAVDFSGLIHQAINVLEK--------GRFVSPWKHILVDEFQDISPQ 445

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
                              +S  +LFAVGD+ Q+IY F GA+       +          
Sbjct: 446 --------RAALLAALRRQNSATSLFAVGDDWQAIYRFSGAQLSLTTAFEAHF------- 490

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             +     L  ++R    I  + ++      + +    +S     +++
Sbjct: 491 -GEGDQCALDTTYRFNGRIGDIANRFIQQNPHQREKPLNSLRAGDNKA 537



 Score = 44.5 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 22/140 (15%)

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             + L+  L+      +     L        +       A      ++  MT+H +KG +
Sbjct: 542 AQEHLEALLDKMSGYVRPDERILVLARYHHLRPAALEMAATRWPKLQLEFMTIHASKGQQ 601

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
           +  V ++             +  IM                         L+   +    
Sbjct: 602 ADYVIILGLNEGREGFPAPARESIME----------------------QALLPQPEDFPD 639

Query: 645 EEYNRLLYVGMTRASDQLII 664
            E  RLLYV +TRA  ++ +
Sbjct: 640 AEERRLLYVALTRARHRVWL 659


>gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 896

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 106/312 (33%), Gaps = 70/312 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +  +Y   K +N + DFEDL++ T +       + +  Y        + IDEVQD + +
Sbjct: 225 DIANYYASYKNENQLYDFEDLLMLTYNAYTSPSANEYRHYSW------VQIDEVQDLNAL 278

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  +I ++T             R++  +GDE+Q+I+SF GA+   +   K          
Sbjct: 279 QLAIIDAITTK---------EQRSVVYLGDEQQAIFSFMGAKLSTLSVLKER-------- 321

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
             K  I  L  + R+ + ++ V++                                 +L 
Sbjct: 322 -CKGHIYHLHTNHRAPSYLVKVLNTFAQH----------------------QLHIAPELL 358

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              + +     +  +   +   +   ++++              ++    +  +      
Sbjct: 359 PSTLKETQQIGDELKIITSGTLEEELRDTA--------------LLAQKLLNDH------ 398

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +   ++V    D   I+   +       I         L     +K L+A    I ++
Sbjct: 399 PNETTSIIVSSNADADKISEELKT----QHIPHFKVSGQDLFSTPLVKLLIAHLGVIANE 454

Query: 432 EDDLSFVCMLKS 443
            + +++  +LK 
Sbjct: 455 HNFIAWSRILKG 466


>gi|256832430|ref|YP_003161157.1| RecB family exonuclease-like protein [Jonesia denitrificans DSM
           20603]
 gi|256685961|gb|ACV08854.1| RecB family exonuclease-like protein [Jonesia denitrificans DSM
           20603]
          Length = 298

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 67/199 (33%), Gaps = 22/199 (11%)

Query: 755 YILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRK---- 802
             L+PS      +  L             ++    RG ++H +L+ +F +   +R     
Sbjct: 12  RALSPSRALDFRQCPLLFRLRTIDRLPERESVAAVRGTVVHSVLERLFDVAPDERDVGFA 71

Query: 803 -NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM--MTTAMS---CDSYSEVSVSGKIN 856
            + +     +  +  PA + +  + +I  ++ +    +               +    ++
Sbjct: 72  TSLVDGVVQELVESRPAVKAEFDVATIEGVVTDARALVARYFELENPQMLHPAAREVTLS 131

Query: 857 CPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
                  ++G +D++ ++      + +YK+      +          Q+  Y  ++    
Sbjct: 132 SYVGRRSVTGVVDRVDVAPDGAIRLVDYKSGRAPAPQYSGNA---AFQMRFYALLVARVK 188

Query: 916 PNKSLVCLLIYVSEPKVFI 934
                +  L+Y+ + K+  
Sbjct: 189 GRLPAMLRLVYLGDGKIME 207


>gi|188527166|ref|YP_001909853.1| hypothetical protein HPSH_01865 [Helicobacter pylori Shi470]
 gi|188143406|gb|ACD47823.1| hypothetical protein HPSH_01865 [Helicobacter pylori Shi470]
          Length = 778

 Score = 90.4 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/469 (11%), Positives = 127/469 (27%), Gaps = 78/469 (16%)

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTI 561
           +L  +      + +  ++    L E  +  +       +     SL++L+    Q     
Sbjct: 334 LLDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLKNYSLKDLLHLYLQEFEAN 393

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            R   ++  ++R+M     +G++   + +VD             + +  +L     +P  
Sbjct: 394 FRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLFLNSALRKSLNLPTL 453

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           + +   + +    L K+ K         L Y+                    +    +  
Sbjct: 454 LDKKNLQKHYYYQLFKNSK------EMALSYI--------------------ESETSKVS 487

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             ++    H +       L       ++   E     P++                 +  
Sbjct: 488 NMLLELDLHIEPIKDAYTLFAPTPLKDYQEEEIQATIPKDFSF----------SASSLNA 537

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL--QVIFTLPEH 799
            L    +   +       S  D                   G ++H+LL          +
Sbjct: 538 FLTCKRRFYYHYIKRFKESPKDENNS-------------AIGSLLHELLKEAYEKDKNPY 584

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
             +  +         + P +    L+    I             +      + +      
Sbjct: 585 ALEERLIQLLETRGNITPKERLDTLIALKKIQAFYIKE--KERFNAKIKI-LDLEKSFET 641

Query: 858 PKKDIIISGRIDQISIS-QQNIFIFEYKT--------------HHHVPQEIEHIPYTHIA 902
             + I   GRID+I  +    I + +YK                   P EI  I   +  
Sbjct: 642 TIQGIAFKGRIDRIDKTADNEIILLDYKFKSGLKLDNMSEKQRGSLSPIEIAQISADY-- 699

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           Q++IY   LK+      +      + + K+    +  L      + + +
Sbjct: 700 QMAIYAFALKNLGYKGPIKAFFYDLRKGKLLEEEEPILQAKMDYLKSSL 748


>gi|238019009|ref|ZP_04599435.1| hypothetical protein VEIDISOL_00871 [Veillonella dispar ATCC 17748]
 gi|237864493|gb|EEP65783.1| hypothetical protein VEIDISOL_00871 [Veillonella dispar ATCC 17748]
          Length = 585

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 75/552 (13%), Positives = 153/552 (27%), Gaps = 152/552 (27%)

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
           ++ +  ++I    LL   ++  +         + I+IDE QDT+++ +  I+SL ++   
Sbjct: 183 IITYNGILIAAKKLLSNDNIKKF----YTNYYSMIIIDEFQDTNILSYYFIKSLIDN--- 235

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                     +  +GD  Q IY F GA      R +               II    ++R
Sbjct: 236 --------NKVVFLGDGIQRIYGFLGALDDVFQRVETDYS---------PQIISFKNNYR 278

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
                    +                                 +L   + +  D   +P+
Sbjct: 279 -------YNNTSIK-----------------------------ELDHLIRAYVDQYIDPK 302

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
            ES       + +  S +     I+  I N+I ++              ++ +L+R    
Sbjct: 303 LES----SILIKKLQSDTEEVNFISEGIKNIIESN-------------CNVAILLRAGWQ 345

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
             +I    +     +           L      + +      I    +++S   +  S  
Sbjct: 346 GGIIAEKLKDESIHF--------FNGLYSEDDCEFIDFYNVAIEEFYNNVSGNAVQSS-- 395

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
                  + K        E       +                        F S +    
Sbjct: 396 -------LKKCLQAIKNREHEIYTNDQKKY--------------------IFDSLYKLLE 428

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +    K  +        E    ++            + + L+ +I  L+          
Sbjct: 429 KLFEVSKNWE----GTTKERYKNIE---------FSLNNNGLKHMIEYLD---------- 465

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V + T+H+AKGLE   V L      VF                       +   
Sbjct: 466 ----EKVVLTTIHSAKGLEWDYVILPQMNKSVFPS-----------WKHMCKKCHNLNSF 510

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
           K  N+  + L+    K+   E   +LYV +TRA   +    ++  +      +   +  +
Sbjct: 511 KLDNDSCTSLLLPEMKTLFREELSVLYVALTRAKKNVFFTVNTGINTHGYPKKENCFINL 570

Query: 686 YDSFHNDERVKK 697
                 D     
Sbjct: 571 PGINQLDFAWND 582


>gi|258653148|ref|YP_003202304.1| RecB family exonuclease-like protein [Nakamurella multipartita DSM
           44233]
 gi|258556373|gb|ACV79315.1| RecB family exonuclease-like protein [Nakamurella multipartita DSM
           44233]
          Length = 323

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 37/210 (17%)

Query: 748 KNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                 P  L+PS         L              +    RG ++H +L+ +F  P  
Sbjct: 25  AARPRRPLALSPSRASDFKSCPLLYRLRAVDRLPEPPSPAAVRGTLVHTVLEEMFGRPGP 84

Query: 800 KR---------KNFITSYCTK---NAKLWPAKEYKNLLLSITRL------LENPMMTTAM 841
           +R                  +      + P +     L S   L      LE+P      
Sbjct: 85  ERTPRRTAEAVGPAWERMAEQCPELVGMLPDEAMAGWLDSARDLVRSYFRLEDPR---RF 141

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900
              +  E +V          + + G ID++ ++    + I +YKT      + E      
Sbjct: 142 EPQA-CEYAVEI---DTVDGVPLRGFIDRLDLAPTGELRIVDYKTGRSPGPDFEGRA--- 194

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
           + QL  Y  ++            LIY+++ 
Sbjct: 195 LYQLKFYALMIYRLRGVVPAQLKLIYLADG 224


>gi|187921118|ref|YP_001890150.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
 gi|187719556|gb|ACD20779.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN]
          Length = 872

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 86/256 (33%), Gaps = 16/256 (6%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS---- 103
              + LQ+ +     ++ F          ++    ++  + + +   +L + ++      
Sbjct: 461 DTVEDLQRLASVLQWQKDFQEKRVSVPMFEWIAPSDLKRKPVFETFYELAQFVENLGLPV 520

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
                +  D  +   +  +              +EE   +  +  F +L  + ++     
Sbjct: 521 AKTLSEAVDGSDEAGLTGAERVFARAVSSFWPVFEELLAEEEIWTFNELFAHFSE--DYP 578

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                +   I   + H+LIDE QD S    + IR    +            +L  VGD+ 
Sbjct: 579 ANFKDVPPYILDGMRHLLIDEFQDISPQIVKWIRGCQRELV----KRGRAGSLTCVGDDW 634

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + G+ P   +R K      +         ++L  +FRS+  IL   + V      
Sbjct: 635 QSIYGWRGSSPDFFVRFKHFFPASSHGY------VKLEENFRSSDHILRCAESVLVDVPG 688

Query: 284 AQGLSEDSTTTIRHRS 299
               +  + +     S
Sbjct: 689 MGWKTCVAQSKWAKES 704


>gi|315497131|ref|YP_004085935.1| double-strand break repair protein addb [Asticcacaulis excentricus
           CB 48]
 gi|315415143|gb|ADU11784.1| double-strand break repair protein AddB [Asticcacaulis excentricus
           CB 48]
          Length = 1006

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 86/769 (11%), Positives = 211/769 (27%), Gaps = 117/769 (15%)

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
           P   L        +  ++  + ++  L    R + +++                      
Sbjct: 253 PGLDLSLAEDVWAQVGDSHPQGAMKALLDRHRVSREVVNTWPVSIEADRARHARRRVLNE 312

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
            +R   +          W   ++   +      +   S    +   +   + A      +
Sbjct: 313 ALRPAEATKD-------WRTQIAALKAGSEAAIKDGLSGLTHIEGRNDEEVAA------V 359

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             ++  + + + GK   +   DI +  R                + + +    +    L 
Sbjct: 360 IALLMREALETPGKTAALVTPDITLSRR-----------VTARLSRWGVRPDSSAGDALI 408

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--------QRHETET 465
             L  + L +L   IL   D +  + +LK PL  F++D    I           R+  E 
Sbjct: 409 HSLVGRFLHSLLDLILEPFDAVKLLALLKHPLSRFADDRHVNILEIIGLRGAKPRNAEEV 468

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH----DFFTLILGAKKGRQQFISRF 521
           +    QK A      +Q  +             S +      +   + A+ G+  +    
Sbjct: 469 LSRLTQKEAFEAADLWQDYMDTCLIWQRQKTDLSDYVRTLTVWAESVAARDGQALWSGAA 528

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
           G     +L + +               +++           R     H  + I+    A+
Sbjct: 529 GATASALLADLIAEGRDFLVEDDQVFVDILR--RALRTATVRTGGHTHPRLTILGAIEAR 586

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
              +  + L      V+         +   +    G+P    ++    +           
Sbjct: 587 MFSADRLILAGLEEGVWPQAAEIDPFLSRPMRKVLGLPSPERRTGLSAHDF--------- 637

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                           +  ++ +        E +   R  + +   +    E +      
Sbjct: 638 ------------VQGASQPEVWMVTRQRREGEPQVQSRWLWRLQTLTTGAGEHLP----- 680

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN--EPYILNP 759
               K +W+ +      P +   +  +   +      +  +        I   E      
Sbjct: 681 ---TKAQWLDWARRMDGPLSVVPDALKPASRPQPAPPVEARPLQLPVTQIETLERDPYAV 737

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-----------------KRK 802
                 G   L+      +   RG  IH + +                         + +
Sbjct: 738 YGRYVLGLKPLDRPNEPFEALRRGTAIHAVAEKFAADDMPMGEAGVRVFCDMLEAQLRAE 797

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
           N   +       L+P    + +     R  ++P +          E S    I+ P+   
Sbjct: 798 NLSEAQLALQRPLFPLLAREYVAFEAERRADHPRL--------LIEQSGKLTIDLPRGTF 849

Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL--------KDS 914
            ++ + D++ I ++ + + ++KT        + +      QL++   IL        +D 
Sbjct: 850 TVTAKADRVEIHERGVDVIDFKTGQPP--SPKAVIAGFYPQLTLTAAILKYGSFNGFEDF 907

Query: 915 YPNKSLVCLLIYVSEPKVFIIP------------QNKLNKAFAEISTKI 951
           +  K L   L+YV   +  + P                ++A + + T++
Sbjct: 908 HRAKGLHE-LVYVRLGQDVVKPRVVYDKKNPLSADEMADRALSRLKTRL 955


>gi|331082718|ref|ZP_08331841.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400337|gb|EGG79979.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 1144

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 78/698 (11%), Positives = 187/698 (26%), Gaps = 131/698 (18%)

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            + +  + +      A  I  ++ T         +  + +D  V+     D  +      
Sbjct: 313 QIYEAQNPASEMEMTAGQIRRLVRT---------KGYRYRDFAVIT---GDMQVYAPAAS 360

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--------- 445
                Y+I    +++  +  +  ++ L A    I+      S   ML+  L         
Sbjct: 361 RAFKRYEIPCFIDEKHSVFLNPFVEYLRAAVDMIVENFSYESVFRMLRCGLNDISTEEAD 420

Query: 446 -----------FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                        FS      + + R E       I +     + K+Q   K +      
Sbjct: 421 RLENYVIAMGIRGFSRWQQEWVRSYRGENPEECVQIDRIRASLVEKWQPFYKKMKT-PDA 479

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL-------------DEFLNFTLRNEQ 541
           +        +  I   K  ++        E    L                L+  +    
Sbjct: 480 SVRTYTEALYEYITANKIQKKLKEFTKNFEAEGNLSLVKEYSQIYEIVMNLLDKLVEILG 539

Query: 542 NSYSSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    ++E    LE      K        ++V +  +   +  +  +VF V         
Sbjct: 540 DKKVRIREFKEILEAGLSEAKVGIIPPTSDQVLVGDMERTRLKDIKIVFFVGVNEGKIPK 599

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +      +     ++    +             +L               LY+ +T+ S+
Sbjct: 600 EQQAGKLLSDLNREELKGSLKERGLSLAPTAKENLYTQKFY---------LYLNLTKPSE 650

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           ++ +     +SN +  +       +   F +  R   + L                   +
Sbjct: 651 RIYLSYSRLSSNGEPLSPSFLVSQIQKLFPDAIREWDVPLFAESKYGALDKLSEEIRKQD 710

Query: 721 NTPLEREET-----------------IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
            T    EE                  I                 +         + S ++
Sbjct: 711 RTSPVFEELMSWFTSQKDYAELINGLIDAAYYVNPQESISKGVAEALYGTELSNSASRLE 770

Query: 764 TKGKTN-----------LESLLSDNQTFNRGLIIH---KLLQV--------IFTLPEHKR 801
              K              E +  +    + G  +H    L              L + +R
Sbjct: 771 QFAKCACSHFLSYGLMLRERVRYEFNMADMGTFLHNSLDLFARKVREQGKSWIDLEDAER 830

Query: 802 KNFITSYCTKNAK------LWPAKEYKNLLLSITRLLENP--MMTTAMSCD----SYSEV 849
                +  T+  +      L  +     ++  + R+++     +   +       + +E 
Sbjct: 831 DALAENCVTEVVEKSGETILLSSARNAYIINRVKRMVKRSVWALQNQLKQGEFYPALTEW 890

Query: 850 SV-------SGKINCPKKDII-ISGRIDQISI---SQQNIFI--FEYKTHHHVPQEIEHI 896
           +        S   +      + + GRID+I +    + ++++   +YK+      +++ I
Sbjct: 891 AFGEKDNIDSLNFDLATGQKLHLKGRIDRIDVCQDKENHLYVKVIDYKSGTT---QLDLI 947

Query: 897 PYTH--IAQLSIYEKIL----KDSYPNKSLVCL--LIY 926
              +    QL++Y        K  +P+K +       Y
Sbjct: 948 KLYYGLQIQLALYLNAALELEKKRFPDKIVQPAGVFYY 985


>gi|302550304|ref|ZP_07302646.1| RecB family exonuclease [Streptomyces viridochromogenes DSM 40736]
 gi|302467922|gb|EFL31015.1| RecB family exonuclease [Streptomyces viridochromogenes DSM 40736]
          Length = 281

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 35/222 (15%)

Query: 757 LNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
           ++PS      +  L              ++   RG ++H +L+ +F  P  +R       
Sbjct: 1   MSPSRASDFMQCPLLYRFRVIDRLPEKPSEAATRGTLVHAVLERLFDAPAAERTAPRAKS 60

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY------------------SEVS 850
                     +    ++       +   +   +                        E+ 
Sbjct: 61  LIPGQWDRLRETRPEVVELFADDPQGERLARWLGEAERLVERWFTLEDPSRLEPAERELF 120

Query: 851 VSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
           V  ++      + + G ID++ ++    + I +YKT      E        + Q+  Y  
Sbjct: 121 VEAELES---GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRPEYSEGA---LFQMKFYAL 174

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           ++            L+Y+   +V  +  + +      +  K+
Sbjct: 175 VVWRLKNVVPRRLQLVYLGSGEV--LTYDPVLADLERVERKL 214


>gi|254779052|ref|YP_003057157.1| hypothetical protein HELPY_0364 [Helicobacter pylori B38]
 gi|254000963|emb|CAX28907.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 776

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/487 (11%), Positives = 133/487 (27%), Gaps = 80/487 (16%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLQTSGFDLSASPL----LDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   + +VD     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L K+ K         L Y+    
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EITLSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++  + H +       L       ++   E    
Sbjct: 480 ----------------ESETSKVSNMLLELNLHIEPIKDAYTLFAPTPLKDYQEEEIKAA 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++                 +   L    +   +       S  D              
Sbjct: 524 IPKDF----------NFSASSLNAFLTCKRRFYYHYMKRFKESPKDENNS---------- 563

Query: 778 QTFNRGLIIHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL--LLSITRLLE 833
                G ++H+LL          H  +  +         + P +    L  L  I     
Sbjct: 564 ---AVGSLLHELLKEAYEKDKNPHALEERLIWLLETRENITPKERLDTLVALKKIQAFYL 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT------H 886
                          + +        + +I  GRID+I  +    I + +YK        
Sbjct: 621 KE--KERFKAKIKI-LDLEKSFETIIQGVIFKGRIDRIDKTADNEIILLDYKFKNDLKLD 677

Query: 887 ------HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
                     + IE I   +  Q++IY   LK+    + +      + + ++    +  L
Sbjct: 678 NMSEKQRKSLRPIEQISTDY--QMAIYAFALKNLGYKEPIKAFFYDLRKGELVEEDELVL 735

Query: 941 NKAFAEI 947
                 +
Sbjct: 736 QAKMDHL 742


>gi|326328708|ref|ZP_08195047.1| exodeoxyribonuclease V, beta subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325953518|gb|EGD45519.1| exodeoxyribonuclease V, beta subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 529

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/513 (10%), Positives = 121/513 (23%), Gaps = 126/513 (24%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   R   ++   V+I+TVH +KGL+ P+V+L               +        
Sbjct: 20  RSAATERPRRLDSDAAAVQIVTVHGSKGLQYPIVYLPFAYDFF--------VRDPEVARF 71

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                             +  +   +     E  R LYV +TRA  Q++       +   
Sbjct: 72  HDADGQRTIDVTRTGAQWAQHLARHQDEELGEELRDLYVALTRAQSQVVAWWAPTANTAT 131

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLT-------------NSINKDEWIAYEWSTHHPEN 721
               R  +             +                      +   +A   ++  PE 
Sbjct: 132 GGLHRLLFGRQPGVTEVPASQEVFDDAYAERVLGLIEKMGGPTAEPSVVATAVASVRPET 191

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIK------------------NDINEPYILNPSTID 763
           T +       + +D +         I+                    + +   L+PS ++
Sbjct: 192 TGVLAARAFTREVDAEWRRTSYSGLIRVDEGVAPTSEPEVEGTDDEPVADDADLSPSEVE 251

Query: 764 --TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                + +L  +    +    G ++H +L+          +  +     +          
Sbjct: 252 LVETPEEHLSPMAELPKGAGFGSLVHAVLEHTDPEAPDLGEELLAKTREQLRWWPVPASA 311

Query: 822 KNLLLSITRLLENPM--------MTTAMSCDSYSEVSVSGKINCPKK------------- 860
           ++L  +I  L   P+        +      D   E+     +                  
Sbjct: 312 EDLATAILPLNLTPLGPLADGLTLAQIPLRDRLRELDFEIPLAGGDARGPGAPDVRLSDL 371

Query: 861 -------------------------------DIIISGRIDQISISQ-QNIFIFEYKTHHH 888
                                             ++G +D +         + +YKT+  
Sbjct: 372 APLLRAHLPADDPMVTYAGRLEAPPLGEQSLRGYLNGSVDVVLRLPSGRFVVVDYKTNFL 431

Query: 889 ---------VPQEIEHIPYTHIAQLSIYEKILKD----SYPNKSLVCLL-----IYVS-- 928
                           +   +  Q  +Y  ++        P       L     +YV   
Sbjct: 432 GVEAMDYTQPKLAEAMLHSHYPLQALLYSAVVHRFLRWRLPGYDPETHLGGVLYLYVRGM 491

Query: 929 ------------EPKVFIIPQNKLNKAFAEIST 949
                              P   L  A +++  
Sbjct: 492 LGPDTPVVDGIPTGVFTWQPPASLAVALSDLLD 524


>gi|317179247|dbj|BAJ57035.1| hypothetical protein HPF30_0938 [Helicobacter pylori F30]
          Length = 778

 Score = 90.0 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/493 (11%), Positives = 135/493 (27%), Gaps = 82/493 (16%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       +        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLETSGFDLNASPL----LDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   + +VD     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L K+ K         L Y+    
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EMALSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++  + H +       L  S    ++   E    
Sbjct: 480 ----------------ESETSKVSNMLLELNLHIEPIKDAYTLFESTPLKDYQEEEIKAT 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++                 +   L    +   +       S  D    T         
Sbjct: 524 IPKDFSF----------SASSLNAFLTCKRRFYYHYIKRFKESPKDENNST--------- 564

Query: 778 QTFNRGLIIHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLE 833
                G ++H+ L          +  +  +         + P +    L+    I     
Sbjct: 565 ----IGSLLHEFLKEAYEKDKNPYALEERLIQLLETKGNITPKERLDTLIALKKIQAFYV 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT------- 885
                   +      + +        + +   GRID+I  +    I + +YK        
Sbjct: 621 KE--KERFNAKIKI-LDLEKSFETTIQGVAFKGRIDRIDKTADNGIILLDYKFKSELKLD 677

Query: 886 -------HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                      P EI  I   +  Q++IY   LK+      +      + + K+    + 
Sbjct: 678 NMSEKQRGSLSPIEIAQISADY--QMAIYAFALKNLGYKGPIKAFFYDLRKGKLLEEEEP 735

Query: 939 KLNKAFAEISTKI 951
            L      + + +
Sbjct: 736 VLQAKMDYLKSSL 748


>gi|308061709|gb|ADO03597.1| hypothetical protein HPCU_02120 [Helicobacter pylori Cuz20]
          Length = 778

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/469 (11%), Positives = 127/469 (27%), Gaps = 78/469 (16%)

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTI 561
           +L  +      + +  ++    L E  +  +       +     SL++L+    Q     
Sbjct: 334 LLDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLKNYSLKDLLHLYLQEFEAN 393

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            R   ++  ++R+M     +G++   + +VD             + +  +L     +P  
Sbjct: 394 FRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLFLNSALRKSLKLPTL 453

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           + +   + +    L K+ K         L Y+                    +    +  
Sbjct: 454 LDKKNLQKHYYYQLFKNSK------EMALSYI--------------------ESETSKVS 487

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             ++    H +       L       ++   E     P++                 +  
Sbjct: 488 NMLLELDLHIEPIKDAYTLFAPTPLKDYQEEEIQAAIPKDFSF----------SASSLNA 537

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL--QVIFTLPEH 799
            L    +   +       S  D                   G ++H+LL          +
Sbjct: 538 FLTCKRRFYYHYIKRFKESPKDESNS-------------AIGSLLHELLKEAYEKDKNPY 584

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
             +  +         + P +    L+    I             +      + +      
Sbjct: 585 ALEERLIQLLETKGNITPKERLDTLIALKKIQAFYVKE--KERFNAKIKI-LDLEKSFET 641

Query: 858 PKKDIIISGRIDQISIS-QQNIFIFEYKT--------------HHHVPQEIEHIPYTHIA 902
             + +   GRID+I  +    I + +YK                   P EI  I   +  
Sbjct: 642 TIQGVAFKGRIDRIDKTADNEIILLDYKFKSDLKLDNMSEKQRGSLSPIEIAQISADY-- 699

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           Q++IY   LK+      +      + + K+    +  L      + + +
Sbjct: 700 QMAIYAFALKNLGYKGPIKAFFYDLRKGKLLEEEEPILQAKMDYLKSSL 748


>gi|261837794|gb|ACX97560.1| hypothetical protein KHP_0349 [Helicobacter pylori 51]
          Length = 778

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/490 (11%), Positives = 133/490 (27%), Gaps = 82/490 (16%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       +        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLETSGFSLNASPL----LDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   + +VD     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P    +   + +    L K+ K         L Y+    
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLSDKKNLQKHYYYQLFKNSK------EIALSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++  + H +       L       ++   E    
Sbjct: 480 ----------------ESETSKVSNMLLELNLHIEPIKDAYTLFAPSPLKDYQEEEIKAT 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++                 +   L    +   +       S  D              
Sbjct: 524 IPKDFSF----------SASSLNAFLTCKRRFYYHYIKRFKESPKDESNS---------- 563

Query: 778 QTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLE 833
                G ++H+LL+ +       +  +  +         + P +    L+    I     
Sbjct: 564 ---AIGNLLHELLKEVYEKDKNPYALEERLIQLLETRGNITPKERLDTLIALKKIQAFYV 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKT------- 885
                   +      + +        + +   GRID+I   +   I + +YK        
Sbjct: 621 KE--KERFNAKIKI-LDLEKSFETTIQGVAFKGRIDRIDKMADNEIILLDYKFKSDLKLD 677

Query: 886 -------HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                      P EI  I   +  Q++IY   LK+      +      + + K+    + 
Sbjct: 678 NMSEKQRGSLSPIEIAQISADY--QMAIYAFALKNLGYKGPIKAFFYDLRKGKLLEEEEP 735

Query: 939 KLNKAFAEIS 948
            L      + 
Sbjct: 736 ILQAKMDYLK 745


>gi|289627194|ref|ZP_06460148.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 813

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 97/334 (29%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +  ++ + ++H++IDE QD S      IR+   +         + R     +
Sbjct: 504 TSPENLKHVSDQMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSS 563

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   R             + + L  +FRS   I+   +
Sbjct: 564 LLCVGDDWQSIYGWRGSSPKYFMEFAREFS------SPATTRVMLSDNFRSHQHIIDAAE 617

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G              R   +    L  +V+ + + +   +     +  DS
Sbjct: 618 HIVRAAPAIAGKKA-----------RASGMPQELLPVKVLDRDEDELAERVAEHYNDGDS 666

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +           R +  +  +I  D       +R+             K           
Sbjct: 667 ILLLYRKGSEKSRFSERLKALIDADAAMGAQGRRIRTLT-----YHSSKGLQADAVFLLG 721

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L     + DL           D      +L+      +      
Sbjct: 722 DCQHLTVSPYKNQVYRLAGLGDVSDL--------QPFDTAQKDEVLRLAYVAITRAARHC 773

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                  T          A+  I++ +   + + 
Sbjct: 774 YWYIDQGTGGGENAQMPKASDRIAQDKPFFEDLR 807



 Score = 39.1 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 87/306 (28%), Gaps = 37/306 (12%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   L    + +        DD   I   R  +  
Sbjct: 524 MIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 583

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +    +FA    S     +                +       A  G++   S    E+
Sbjct: 584 YF---MEFAREFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIAGKKARASGMPQEL 640

Query: 526 ------IDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSANHN 570
                     DE       +  +  S L               L+        A  A   
Sbjct: 641 LPVKVLDRDEDELAERVAEHYNDGDSILLLYRKGSEKSRFSERLKAL-IDADAAMGAQGR 699

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +R +T H++KGL++  VFL+     +    +  +++ +  L D   +  +         
Sbjct: 700 RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGDVSDLQPF--------- 750

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                      + ++E  RL YV +TRA+          T   + +      D +     
Sbjct: 751 ---------DTAQKDEVLRLAYVAITRAARHCYWYIDQGTGGGENAQMPKASDRIAQDKP 801

Query: 691 NDERVK 696
             E ++
Sbjct: 802 FFEDLR 807


>gi|118360832|ref|XP_001013647.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89295414|gb|EAR93402.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1093

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 77/256 (30%), Gaps = 61/256 (23%)

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               L+KK       R KI  + ++I  DE QD +  ++E+++    +  V         
Sbjct: 139 KVVQLMKKDKA---FRNKIVSQFDYIFFDEFQDINPDEYEMLKIFASENTV--------- 186

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKR-INQKRATNAGQKFSIIELPLSFRSTADILTV 273
            +  +GD+ Q+IY F  A+     +                     L  ++RST  I+  
Sbjct: 187 -ITFIGDDAQNIYGFREAKLHNSTQAVDSDFP--------DIKKYYLTCNYRSTEYIVQF 237

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            + V                     S++      +Q+     +   +   P+   + S  
Sbjct: 238 ANSV-------------------LESAKSDYGYKMQMTSFPPNNQGNNQPPEFTKYVSIN 278

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           +              I   I  ++ +   F            I VL R  K    +    
Sbjct: 279 EQN----------ESIISHILELVESGFTFDQ----------IAVLSRTNKPLQFLEESL 318

Query: 394 RFLKNDYKISVVGNDR 409
               N    + VG + 
Sbjct: 319 EIYNNQKGKTSVGKEG 334



 Score = 47.2 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 37/108 (34%)

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
           S++  +V + T+H +KGLE  VVFL+      F   + +K                    
Sbjct: 392 SSSEQKVTLTTIHKSKGLEWDVVFLIGLNDDYFPGTNKEKEEEEE--------------- 436

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                  R+ YV +TRA  +L++    + +N+
Sbjct: 437 ----------------------RRIFYVAVTRAKKKLLMSFVWSKNNQ 462


>gi|194432359|ref|ZP_03064646.1| helicase IV [Shigella dysenteriae 1012]
 gi|194419246|gb|EDX35328.1| helicase IV [Shigella dysenteriae 1012]
 gi|332095922|gb|EGJ00929.1| helicase IV [Shigella dysenteriae 155-74]
          Length = 684

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 89/284 (31%), Gaps = 42/284 (14%)

Query: 16  IYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLT 75
           +  D        +++  K  S              + +Q +                 L 
Sbjct: 296 LENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNF------WDDEKLQ 349

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           ++   + +     +        E +  + +E   +  +             + L   L  
Sbjct: 350 RRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKR------------IKLMPPLLK 397

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            ++ A K    +DF  LI     +L+K         +      HIL+DE QD S  +  +
Sbjct: 398 AWKGALKAENAVDFSGLIHQAIVILEK--------GRFISPWKHILVDEFQDISPQRAAL 449

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           + +L +         +S  TLFAVGD+ Q+IY F GA+                    + 
Sbjct: 450 LAALRK--------QNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENF--------GEG 493

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +L  ++   + I  V ++             +S T    ++
Sbjct: 494 ERCDLDTTYHFNSRIGKVANRFIQQNPGQLKKPLNSLTNGDKKA 537



 Score = 44.5 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 106/385 (27%), Gaps = 49/385 (12%)

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES-------SASILARRIAYTISN 355
                 +L+     +  S+   Q + W  +     Q S           L RR+A  +  
Sbjct: 299 DTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQRRLASRLDR 358

Query: 356 MIGTDTIFSNGKKRVIQ--AKDILVLVRKRK--DTPLITFLTRFLKNDYKISVVGNDRFI 411
            +    +    +  +I    ++I  L  KR     PL+      LK +  +   G     
Sbjct: 359 WVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMPPLLKAWKGALKAENAVDFSGLIHQA 418

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           +      + +      ++ +  D+S     +L +     S+  +F +             
Sbjct: 419 IVILEKGRFISPWKHILVDEFQDISPQRAALLAALRKQNSQTTLFAVGDDWQAIYRFSGA 478

Query: 470 IQKFANCGISKFQH-----------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                      F                 I ++ +     +P      +     G ++ +
Sbjct: 479 QMSLTTAFHENFGEGERCDLDTTYHFNSRIGKVANRFIQQNPGQLKKPLNSLTNGDKKAV 538

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +         LD  L+      +     L        +     K A      ++  MT+H
Sbjct: 539 TLLDESQ---LDALLDKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIH 595

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KG ++  V +V             +  IM      P                      
Sbjct: 596 ASKGQQADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPD---------------- 639

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLI 663
                  E  RL+YV +TRA  ++ 
Sbjct: 640 ------AEERRLMYVALTRARHRVW 658


>gi|217033350|ref|ZP_03438781.1| hypothetical protein HP9810_9g103 [Helicobacter pylori 98-10]
 gi|216944291|gb|EEC23716.1| hypothetical protein HP9810_9g103 [Helicobacter pylori 98-10]
          Length = 778

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 57/493 (11%), Positives = 134/493 (27%), Gaps = 82/493 (16%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLETSGFDLSASPL----LDLENLTLALLEQQSSKEKTPLKEVHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   + +VD     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L K+ K         L Y+    
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EMALSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++    H +       L  S    ++   E    
Sbjct: 480 ----------------ESETSKVSNMLLELDLHIEPIKDAYTLFESTPLKDYQEEEIKAT 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++                 +   L    +   +       S  D    T         
Sbjct: 524 IPKDFSF----------SASSLNAFLTCKRRFYYHYIKRFKESPKDENNST--------- 564

Query: 778 QTFNRGLIIHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLE 833
                G ++H+ L          +  +  +         + P +    L+    I     
Sbjct: 565 ----IGSLLHEFLKEAYEKDKNPYALEERLIQLLETKGNITPKERLDTLIALKKIQAFYV 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT------- 885
                   +      + +        + +   GRID+I  +    I + +YK        
Sbjct: 621 KE--KERFNAKIKI-LDLEKSFETTIQGVAFKGRIDRIDKTADNGIILLDYKFKSELKLD 677

Query: 886 -------HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                      P EI  I   +  Q++IY   LK+      +      + + K+    + 
Sbjct: 678 NMSEKQRGSLSPIEIAQISADY--QMAIYAFALKNLGYKGPIKAFFYDLRKGKLLEEEEP 735

Query: 939 KLNKAFAEISTKI 951
            L      + + +
Sbjct: 736 VLQAKMDYLKSSL 748


>gi|315655699|ref|ZP_07908597.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
 gi|315489763|gb|EFU79390.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333]
          Length = 1164

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 95/954 (9%), Positives = 238/954 (24%), Gaps = 151/954 (15%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            + A+  + + +    L+   L  +   +  + TQ   +   DL + + + +     +   
Sbjct: 131  RLATDAEVMVQIQDFLAEMPL--EEELRAALETQGFRR---DLVDGIFRVRAFAGDVSSD 185

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV-LDFEDLIINTNDLLKKRDVSAWIRYK 172
                 +       +   +          +++   LD       T  L ++  ++      
Sbjct: 186  SAASPVHPLVTRLIQAMQADREAKRSQARQSAWPLD-------TASLFEEYLLAVKAGAP 238

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            + +    + ID++Q+ + +  +++                  TL A    +  + +F GA
Sbjct: 239  VPE---LVGIDDLQNFNGLMIDILSLWATH----------GTTLVACTLPETCVNTFRGA 285

Query: 233  EPKRVLREKRINQKRATNAG------QKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
             P    R  +  +             Q+     L  ++R        V+++     +A+ 
Sbjct: 286  SPHLSERLWQQLETIPGKGAIEILLTQEHVPAPLRQAWR------IAVNRLGVHGISARL 339

Query: 287  LSEDSTTTIRHRSSRI--GQVGTVQLWEQVVSQHDSQCNP---QQESWTSYFDSLPQESS 341
             +     +     +       G  ++     S   +Q        +    + D   + S 
Sbjct: 340  WNSIQEPSPASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQ 399

Query: 342  AS------ILARRIAYTISNM-------IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
             +        AR++A  + NM         T  +      R +      V V       L
Sbjct: 400  MAVLTRSSREARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKL 459

Query: 389  ITFLTRFLKNDY--KISVVGNDRF--ILTD---HLAIKDLMALGRFILSQEDDLSFVCML 441
                   L +       V    R    L D           A G   +    D +     
Sbjct: 460  SDLDLAGLLSSALVGWDVWRMRRMDSSLYDLQLQPPADSENAAGSTGVMDSADTADDEGS 519

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH-----IAQ 496
               +          +                     I     ++     L        A 
Sbjct: 520  GIQIVGNLPYIQQFLRQVISGQNDFSVRSVDEIISAIPDAAQLVDLAQALRSGWQQWKAD 579

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVI------------DVLDEFLNFTLRNEQNSY 544
              S       +       +   +R     +            D++ +        E  + 
Sbjct: 580  SGSVQLLLWKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNP 639

Query: 545  -SSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              +  +    +             +   + V +++          +V +V      +   
Sbjct: 640  GKTAADFAQGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWSLVAVVGLTDGNWPAM 699

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                  +  S+ +          S +                 +   R  +  +TR + +
Sbjct: 700  RWPGSILGSSMFELENYGDPTNSSSAGYLW-----------NWQNEYRHFFTALTRCTQR 748

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK---KIKLTNSINKDEWIAYEWSTHH 718
            LI+   +     + +   +    +        R+    +  +             W T  
Sbjct: 749  LILGTTAQDGVGRSTFLTSLVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPT 808

Query: 719  PENTPLEREETIKQLMD-EQKIPKKLFSPIKNDINEPYI----LNPSTIDTKGKTNLE-- 771
             +              D     P+     +    +E       +  S ++   +  L+  
Sbjct: 809  IDAPTAAGLLAKLAAGDCPSAHPENWIGALPVSGDETESAEIHIYASGLERALENPLDYV 868

Query: 772  --------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP---AKE 820
                               G I+H+  +++              +   +         + 
Sbjct: 869  LSWSGYSNDEDDPYAANKVGNIVHEAAEILGR----------RYWWEGHGPRDDLEFEQV 918

Query: 821  YKNLLLSITRLLE----NPMMTTAMSCD------------------SYSEVSVSGKINCP 858
               L   + RLL     +  + +                       S  EV    ++   
Sbjct: 919  LTELRQEVRRLLGPLSGDTWVESNFRRHIETCLVPLATFLVNHQYPSRFEVRYPCRLETS 978

Query: 859  KKDIII--SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
                 +  + RID++  +   + I +YKT +        +      QL++Y+  
Sbjct: 979  SGKGALVYNARIDRVMFAHGRVIIMDYKTGNPSNFSAAKVAAN--LQLALYQAA 1030


>gi|330868031|gb|EGH02740.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 813

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 97/334 (29%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +  ++ + ++H++IDE QD S      IR+   +         + R     +
Sbjct: 504 TSPENLKHVSDQMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSS 563

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   R             + + L  +FRS   I+   +
Sbjct: 564 LLCVGDDWQSIYGWRGSSPKYFMEFAREFS------SPATTRVMLSDNFRSHQHIIDAAE 617

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G              R   +    L  +V+ + + +   +     +  DS
Sbjct: 618 HIVRAAPAIAGKKA-----------RASGMPQELLPVKVLDRDEDELAERVAEHYNDGDS 666

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +           R +  +  +I  D       +R+             K           
Sbjct: 667 ILLLYRKGSEKSRFSERLKALIDADAAMGAQGRRIRTLT-----YHSSKGLQADAVFLLG 721

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L     + DL           D      +L+      +      
Sbjct: 722 DCQHLTVSPYKNQVYRLAGLGDVSDL--------QPFDTAQKDEVLRLAYVAITRAARHC 773

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                  T          A+  I++ +   + + 
Sbjct: 774 YWYIDQGTGGGENAQMPKASDRIAQDKPFFEDLR 807



 Score = 39.1 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 87/306 (28%), Gaps = 37/306 (12%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   L    + +        DD   I   R  +  
Sbjct: 524 MIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 583

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +    +FA    S     +                +       A  G++   S    E+
Sbjct: 584 YF---MEFAREFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIAGKKARASGMPQEL 640

Query: 526 ------IDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSANHN 570
                     DE       +  +  S L               L+        A  A   
Sbjct: 641 LPVKVLDRDEDELAERVAEHYNDGDSILLLYRKGSEKSRFSERLKAL-IDADAAMGAQGR 699

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +R +T H++KGL++  VFL+     +    +  +++ +  L D   +  +         
Sbjct: 700 RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGDVSDLQPF--------- 750

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                      + ++E  RL YV +TRA+          T   + +      D +     
Sbjct: 751 ---------DTAQKDEVLRLAYVAITRAARHCYWYIDQGTGGGENAQMPKASDRIAQDKP 801

Query: 691 NDERVK 696
             E ++
Sbjct: 802 FFEDLR 807


>gi|302533531|ref|ZP_07285873.1| RecB family exonuclease [Streptomyces sp. C]
 gi|302442426|gb|EFL14242.1| RecB family exonuclease [Streptomyces sp. C]
          Length = 294

 Score = 89.6 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 72/236 (30%), Gaps = 37/236 (15%)

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFT 795
            +   +  + P  L+PS      +  L              +    RG ++H +L+ +F 
Sbjct: 9   SADASSGASRPTSLSPSRAGDFMQCPLLYRFRVIDRLPEKPSAAATRGTLVHAVLERLFD 68

Query: 796 LPEHKR---------KNFITSYCT---KNAKLWPAKE----YKNLLLSITRLLENPMMTT 839
            P H+R                     + A+L+P  +        L     L+E      
Sbjct: 69  HPAHERTVPRAKELLPGQWERLLEAKPELAELFPEGDGGAGLARWLSEAEALVE----RW 124

Query: 840 AMSCDSYSEVSVSGKINCPKK---DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEH 895
               D      V  +     +    + + G ID++ ++    + I +YKT          
Sbjct: 125 FTLEDPTRLEPVEREFFVEAELESGLRLRGIIDRVDVAATGEVRIVDYKTGKAPRP---E 181

Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                + Q+  Y  ++            L+Y+    V  +  + +      +  K+
Sbjct: 182 YAEGALFQMKFYALVVWRLRQVVPRRLQLVYLGSGDV--LTYDPVPADLERVERKL 235


>gi|89897382|ref|YP_520869.1| hypothetical protein DSY4636 [Desulfitobacterium hafniense Y51]
 gi|89336830|dbj|BAE86425.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 594

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 23/149 (15%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           +       Y+     +  +  ED++  ++++LK   +   IR  I  +  +ILIDE QDT
Sbjct: 181 VTAGFFNAYKAMFWDDGTIHHEDVLFFSHEILKNHPL---IREFIAAKYPYILIDEFQDT 237

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRA 248
             +Q ++++ ++E          +   +  +GD  QSI+ F GA     L  K       
Sbjct: 238 HPVQTKILKWISE----------AGAIIGVIGDPAQSIFKFQGASRADFLEFK------- 280

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKV 277
                      +  + RST +I+ +++ +
Sbjct: 281 ---LPGQKNYAIKYNRRSTRNIVNILNHI 306


>gi|170079560|ref|YP_001736193.1| hypothetical protein SYNPCC7002_F0007 [Synechococcus sp. PCC 7002]
 gi|169887229|gb|ACB00938.1| conserved hypothetical protein [Synechococcus sp. PCC 7002]
          Length = 889

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 77/633 (12%), Positives = 161/633 (25%), Gaps = 53/633 (8%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              AR     I  ++             + A+ I ++     +      L   +  +Y +
Sbjct: 247 EAEARGTLGQIKQLLQQG----------VAARKIAIVT---NEDNHWGPLLLHVAQEYDV 293

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            +   +   L        L  L   I +          L  PL +    +       R  
Sbjct: 294 PLSLPNPISLQKTRLGAWLEQLLTVIETNYSFEVTAQWLSHPLTHPLGRE--FWQAARTL 351

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
               +E  Q            V++          F    ++   IL   K R++ +    
Sbjct: 352 KPNHFEAWQALTQEHYQWDLAVLQP----PQQGSFLVWREYLKEILNVLKVRRRALPWVT 407

Query: 523 NEVI-----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             V      D LD               + +   +E+      +          V +   
Sbjct: 408 ETVAYKKLIDGLDSLGTSL-----TETMTWEMFQAEIRTSLQLLTTPAYPMRGGVGVHNP 462

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
               G +   +F +D    V     ++   ++              +             
Sbjct: 463 QNLIGAQYDYIFCIDGAEGVMPRP-LRDEPVLDFYTRKQLSDKLPIEGAIAKARREQFQF 521

Query: 638 HLKKSTQEEYNRLLYVGMT----RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
           +      ++     Y  +     R   Q+          + K         V ++     
Sbjct: 522 YSLLQVPQKQFTFSYSTLGQGEGRYRSQVASIYFKKLGLQPKKTSIAIAASVAEARQFYL 581

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
              +I         +                  +E    +       +  FS  +     
Sbjct: 582 TQSQIPTELQSETLDQAIAAHQIEQRRLQKSALDEYQGLIGVPFPWREHTFSASQLLQLG 641

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFIT 806
                           L+   +  +   RG++ HK+L++          L     +  + 
Sbjct: 642 QCPFKWFAGKVLKLAALDEPETTLEPSQRGILYHKVLELALNAYRENPDLDLTDFEQ-LK 700

Query: 807 SYCTKNAKLWPAKEYKNLLLSI---TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
           ++  +   +    E            + L+  +       +      +  KI    +D  
Sbjct: 701 AWFIEAEDVLKLPELSAWERQCTEHIQTLQRAIAAPEFLPEGRHVFRLEDKIQFTWQDFR 760

Query: 864 ISGRIDQISI--SQQNIFIFEYKTHHHVPQEIEHIPYTHI--AQLSIYEKILKDSYPNKS 919
           I+G ID+I        + I +YKT    P+ I+          QL IYE  ++  YP   
Sbjct: 761 ITGYIDRIDQISGTNELVIMDYKTSSSPPKGIQDESGLLKIDLQLPIYEASVQHQYPEFQ 820

Query: 920 LVCLLIY--VSEPKVFIIPQNK--LNKAFAEIS 948
           +   L Y      K+     ++  L  A   + 
Sbjct: 821 VKQNLYYSLTKGKKLSSKSPDEKDLQAAGDRLK 853


>gi|298345280|ref|YP_003717967.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
 gi|298235341|gb|ADI66473.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063]
          Length = 1164

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 97/954 (10%), Positives = 239/954 (25%), Gaps = 151/954 (15%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            + A+  + + +    L+   L  +   +  + TQ   +   DL + + + +     +   
Sbjct: 131  RLATDAEVMVQIQDFLAGMPL--EEELRAALETQGFRR---DLVDGIFRVRAFAGDVSSD 185

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV-LDFEDLIINTNDLLKKRDVSAWIRYK 172
                 +       +   +          +++   LD       T  L ++  ++      
Sbjct: 186  SAASPVHPLVTRLIQAMQADREAKRSQARQSAWPLD-------TASLFEEYLLAVKAGAP 238

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            + +    + ID++Q+ + +  +++                  TL A    +  + +F GA
Sbjct: 239  VPE---LVGIDDLQNFNGLMIDILSLWATH----------GTTLVACTLPETCVNTFRGA 285

Query: 233  EPKRVLREKRINQKRATNAG------QKFSIIELPLSFRSTADILTVVDKVFSIPENAQ- 285
             P    R  +  +             Q+     L  ++R        V+++     +A+ 
Sbjct: 286  SPHLSERLWQQLETIPGKGAIEILLTQEHVPAPLRQAWR------IAVNRLGVHGISARL 339

Query: 286  -GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP---QQESWTSYFDSLPQESS 341
                ++S+       S     G  ++     S   +Q        +    + D   + S 
Sbjct: 340  WNSIQESSPASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQ 399

Query: 342  AS------ILARRIAYTISNM-------IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
             +        AR++A  + NM         T  +      R +      V V       L
Sbjct: 400  MAVLTRSSREARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKL 459

Query: 389  ITFLTRFLKNDY--KISVVGNDRFI-----LTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                   L +       V    R       L          A G   +    D +     
Sbjct: 460  SDLDLAGLLSSALVGWDVWRMRRMDSSLYDLRLQPPADSENAAGSTGVMDSADTADDEEG 519

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH-----IAQ 496
               +          +                     I     ++     L        A 
Sbjct: 520  GIQIVGNLPYIQQFLRQVISGQNDFSGRSVAEIISAIPDAAQLVDLAQALRSGWQQWKAD 579

Query: 497  FCSPHDFFTLILGAKKGRQQFISRFGNEVI------------DVLDEFLNFTLRNEQNSY 544
              S       +       +   +R     +            D++ +        E  + 
Sbjct: 580  SGSVQLLLWKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNP 639

Query: 545  -SSLQELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              +  +    +             +   + V +++         P+V +V      +   
Sbjct: 640  GKTAADFAQGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWPLVAVVGLTDGNWPAM 699

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                  +  S+ +          S +                 +   R  +  +TR + +
Sbjct: 700  RWPGSILGSSMFELENYGDPTNSSSAGYLW-----------NWQNEYRHFFTALTRCTQR 748

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK---KIKLTNSINKDEWIAYEWSTHH 718
            LI+   +     + +   +    +        R+    +  +             W T  
Sbjct: 749  LILGTTAQDGVGRSTFLTSLVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPT 808

Query: 719  PENTPLEREETIKQLMD-EQKIPKKLFSPIKNDINEPYI----LNPSTIDTKGKTNLE-- 771
             +              D     P+     +    +E       +  S ++   +  L+  
Sbjct: 809  IDAPTAAGLLAKLAAGDCPSAHPENWMGALPVSGDETESAEIHIYASGLERALENPLDYV 868

Query: 772  --------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP---AKE 820
                               G I+H+  +++              +   +         + 
Sbjct: 869  LSWSGYSNDEDDPYAANKVGNIVHEAAEILGR----------RYWWEGHGPRDDLEFEQV 918

Query: 821  YKNLLLSITRLLE----NPMMTTAMSCD------------------SYSEVSVSGKINCP 858
               L   + RLL        + +                       S  EV    ++   
Sbjct: 919  LTELRQEVRRLLGPLSGETWVESNFRRHIETCLVPLATFLVNHQYPSRFEVRYPCRLEAS 978

Query: 859  KKDIII--SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
                 +  + RID++  +   + I +YKT +        +      QL++Y+  
Sbjct: 979  SGKGALVYNARIDRVMFAHGRVIIMDYKTGNPSNFSAAKVAAN--LQLALYQAA 1030


>gi|148380045|ref|YP_001254586.1| DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|153934057|ref|YP_001384341.1| ATP-dependent DNA helicase UvrD [Clostridium botulinum A str. ATCC
           19397]
 gi|153935329|ref|YP_001387878.1| ATP-dependent DNA helicase UvrD [Clostridium botulinum A str. Hall]
 gi|148289529|emb|CAL83629.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152930101|gb|ABS35601.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152931243|gb|ABS36742.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium botulinum
           A str. Hall]
          Length = 593

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 72/187 (38%), Gaps = 23/187 (12%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFE 150
           K    +K+ L                 K +   +    + +     Y++      ++  E
Sbjct: 140 KDDNKIKKCLMDLDWSLKDQELLLKVRKDYNRKVGRYYIKEECFPSYKQLFWDEGIIHHE 199

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           D++  + +LL++  +   I+  +  +  +I +DE QDT+ IQ ++I+ L           
Sbjct: 200 DVLYFSFNLLEQYPM---IKEFLSAKYPYIFLDEFQDTNPIQTQIIKWL----------G 246

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
            +      +GD  QSIY F GA        ++                ++  + RST +I
Sbjct: 247 EAGSLTGVIGDPAQSIYKFQGAS-------RKDF---LEFNLLNQKNYKIEKNRRSTENI 296

Query: 271 LTVVDKV 277
           + +++ +
Sbjct: 297 IKILNHL 303


>gi|225019256|ref|ZP_03708448.1| hypothetical protein CLOSTMETH_03209 [Clostridium methylpentosum
           DSM 5476]
 gi|224947887|gb|EEG29096.1| hypothetical protein CLOSTMETH_03209 [Clostridium methylpentosum
           DSM 5476]
          Length = 1119

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/656 (9%), Positives = 168/656 (25%), Gaps = 92/656 (14%)

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            ++   ++   + ++I ++ R   D      +       Y I    ++   +     I+ 
Sbjct: 312 EVWELVQRHGYRFREIALITR---DLESYQGVLESALRKYGIPYFMDETVSVEHDPLIRF 368

Query: 421 LMALGRFILSQEDDLSFVCMLKSPL-----------------FNFSEDDIFKICTQRHET 463
             +L       +D    + +LK  L                 +N ++D + +  T     
Sbjct: 369 ASSLLAAADGGKDISPVLALLKCGLTRFGLTQISYFENYLYTWNITKDQLNQPFTHNPRG 428

Query: 464 ETVYEYIQK-----FANCGISKFQHVIKYIH-----------ELIHIAQFCSPHDFFTLI 507
               E  Q       A+   +    VI  +             L          D     
Sbjct: 429 FVDRETEQDGQVTALADEVRAAVAEVISLLRGAEQTARGYGSALFEALHRLGVADVLNQR 488

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT----IKR 563
           +    G ++F      E   + D  ++       ++      L    E +  +       
Sbjct: 489 VERLNGEEKFPE--AEEQARLWDVLIDILEVLAHSTGEVRLTLRRYRELFDLSAKGYDLG 546

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
           +   + + V I +        S  VF+   G  +F            S  ++        
Sbjct: 547 SIPQSLDAVMIGSAERTIIGNSRAVFVFGAGEGIFPLSPQFDGVFTDSDREELKKLGVEL 606

Query: 624 QSKSRNNIVSDLIKHLK-----KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                + I+ +     K     +       RL  +  +      +I + +          
Sbjct: 607 SKPIGDRILEERFSAYKSLSSPREHLVVSARLADIAGSPLYPSEVITQITKMFGSGVVTY 666

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
                +       +    ++         +  A        E    +R   +        
Sbjct: 667 TADLGLADFCRTKESAFLQLAFHYRSRDGQAEALRRYFAQDEEY-GDRLRRLDAAAQTGG 725

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIH 787
                    +        ++P+ ++   K                  ++    + G + H
Sbjct: 726 FRLYDRKNAERLFGRQLAVSPTQVENYYKCGFLFFCANGMKAYPRGKANLNPLSLGKVTH 785

Query: 788 KLLQVIFTLPE------HKRKNFITSYCTKNAKLWPAKEYKNLLL-------SITRLLEN 834
            +L+ + + P        +    +          +   +             +   L+E 
Sbjct: 786 HVLEQLLSTPSFYQMEYEEIAQAVEQLLDGYIDQFMGGKQDKTARFLQLYRNTARSLVEL 845

Query: 835 PM-MTTAMSCDSYSEVSVSGKINCPKKDIIIS------------GRIDQI--SISQQN-- 877
              +    +   +   +   +I        I+            G ID++          
Sbjct: 846 ARNIQKEFAHCRFQPAAFELEIGDKGAVQPITLPLSDGCSVKLIGEIDRVDSYQKDGKTY 905

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE-KILKD--SYPNKSLVCLLIYVSEP 930
           I + +YK+      ++  I Y    Q+ +Y   + +   +   +++   ++Y+   
Sbjct: 906 IRVVDYKSGAGRTFDLSEIYYGLNLQMLLYLFSLWEQGKAKFGETVPAGVLYLPAG 961


>gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
 gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A]
          Length = 892

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 119/345 (34%), Gaps = 72/345 (20%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            + +  + F+   +  +  +     +  L    YL + YE  K +N ++DFEDL++ T D
Sbjct: 190 YIYEHAESFLDYINDLDLDRSLTYKIIMLLRKMYLASCYEHYKIENHLIDFEDLLLFTYD 249

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           + K          K ++    I +DEVQD + +Q  +I  LTE          +   +  
Sbjct: 250 VYKNN--------KENKHYKWIQVDEVQDLNGMQLAIIDLLTEK---------NNSIVMF 292

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           +GDE+Q+I+SF GA+   +   K            K +I  L  + RS   +L V +   
Sbjct: 293 LGDEQQAIFSFMGAKADTLNLLKSR---------CKGNIHHLMQNHRSPKYLLDVFNT-- 341

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                                +         L     ++  ++    +   +        
Sbjct: 342 --------------------YAEKQLKIDKDLLPITDNKSVAETGSLKIISS-------- 373

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                        TI + I    I +             ++V    D   I+     L  
Sbjct: 374 ------------NTIEDEIMDVIILAKNIFLKDPEATTAIIVNSNLDADKISCAMSKL-- 419

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
              I+        L D  ++K L++    + ++ + +++  ++K 
Sbjct: 420 --DITHFKVSGKDLFDKPSMKLLLSHLEILSNEHNFIAWARLMKG 462


>gi|167574987|ref|ZP_02367861.1| UvrD/REP helicase [Burkholderia oklahomensis C6786]
          Length = 598

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 96/311 (30%), Gaps = 26/311 (8%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L + + T  + +  +  +S     ++     I  + + +        ++    +      
Sbjct: 188 LTEPNATDGLLKWLADGASAPPGFEYQIAGEIRPESLLQCFFSAASFIENLGLDVPATVG 247

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVS--AW 168
           +   +                   +E         ++ F         L  +   +    
Sbjct: 248 QMK-FTSSDPDRLFFEALAIFWPAFESHLDAQKPKIMTFN----RMFALFGEHSRANLRL 302

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED-----FFVGKNTHSSPRTLFAVGDEK 223
           +   + + ++H+++DE QD S      +R++  +       +    ++   +L  VGD+ 
Sbjct: 303 VPDPVLRTMSHLMVDEFQDISPQIVSWVRAVLTEIRRRGAALHAGRNAMHSSLLCVGDDW 362

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIYS+ G+ PK  L  +   +          + + L  +FRS   ++   + +      
Sbjct: 363 QSIYSWRGSSPKYFLEFEDEFE------SPATTQVMLSENFRSHQYVIDAAEHIVRSAPA 416

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             G    S  T             V + ++  +    +   +     S      +     
Sbjct: 417 IPGKKARSAGTA------AADPVPVVVLDRDDAALAERVRERYAKGDSVMVLFRRGDDGE 470

Query: 344 ILARRIAYTIS 354
            +   +A  I 
Sbjct: 471 AMKELLADLIK 481


>gi|261415282|ref|YP_003248965.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
            subsp. succinogenes S85]
 gi|261371738|gb|ACX74483.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes
            subsp. succinogenes S85]
 gi|302327939|gb|ADL27140.1| ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain
            protein [Fibrobacter succinogenes subsp. succinogenes
            S85]
          Length = 1655

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 87/263 (33%), Gaps = 29/263 (11%)

Query: 89   INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA----SLTLAKYLNAHYEEAKKKN 144
            I +  PD    L  ++    +++ R        +         +LA  +       K   
Sbjct: 1101 IEEAKPDSILCLTYTRAACRELKKRLFDLAGPLAAKVNITTFHSLAFSILGVQGNKKALE 1160

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                 +D++    +LL+  + +      +      IL+DE QD S  ++ ++R+L +   
Sbjct: 1161 NA---DDVVSKAAELLESGEEAGVGAPTV------ILVDEFQDLSAGEYRLLRALYDLG- 1210

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                       +  VGD+ QSI++F G+  +   +                    L  ++
Sbjct: 1211 ------EKDPRVIVVGDDDQSIFAFRGSSSEYFQKFADEFPN--------TEKFYLTTNY 1256

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS A ++   +         +         ++H  + +                +     
Sbjct: 1257 RSVAGLVR-ANAKLLELMTERVKEGSQQLALKHSQAELAFYEEGDKATAAFGAAEILAQK 1315

Query: 325  QQESWTSYFDSLPQESSASILAR 347
             + + T  +  L +E++ + LA 
Sbjct: 1316 FKSNPTESYCILTRENAEAFLAA 1338


>gi|197286280|ref|YP_002152152.1| plasmid-related helicase [Proteus mirabilis HI4320]
 gi|194683767|emb|CAR44810.1| putative plasmid-related helicase [Proteus mirabilis HI4320]
          Length = 630

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/510 (14%), Positives = 150/510 (29%), Gaps = 93/510 (18%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           + F  L      +++  D    +R  I      + +DE QDT+  Q++ + S+       
Sbjct: 199 VSFPALNRLAEYIVRTNDH---VRRSIRASYPIVFVDEFQDTTFAQYDFLSSVF------ 249

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               SS   + AVGD KQ I  + GA+     + +                  L L+ RS
Sbjct: 250 ---KSSEAEVTAVGDYKQRIMGWAGAKGDVFHQFEADFS---------AERHSLLLNHRS 297

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           + +++  +  V +   + +                            V     S  N   
Sbjct: 298 SPELVR-IQHVIAQAIDHE----------------------------VREVQTSNINLIS 328

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                   S      A+ LA  IA    +++G          R +  ++  +LVR++ + 
Sbjct: 329 GDAAWICCSYNINQEAAHLAEWIAN---DLLG----------RSLNPRNYSILVRQKPE- 374

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                   +    + +S+          + ++K      + +L++E  + F  +L+  L 
Sbjct: 375 -DYEQQLSYYLAQHGLSLR---------NESVKIGQTTLQDLLAEELTILFSTLLRLGLV 424

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFT 505
             +     ++ +         +  +K       +    I  +  L+       +  D F 
Sbjct: 425 RRNAQAWNQLSSDIRILRNTNQEDEKALRQVERELTKFISTLRMLMQQPLTRENGRDVFE 484

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEF-LNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +          S F       L E  L        N   +       L          
Sbjct: 485 RTI-KFINSDDLRSSFSRYATGNLLEINLAALEEFFINCVDTQNSWAGLL---------D 534

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                N + +MT+H +KGLE      +      +               +          
Sbjct: 535 EFEGTNHIPLMTIHKSKGLEFDTTIFMGIDDNAW-------WSYKQGDKEGLSTFFVALS 587

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              +  I S   +  +++   ++  LL   
Sbjct: 588 RAKQRAIFSYCQQRGQRTNVADFYELLTAA 617


>gi|153855192|ref|ZP_01996376.1| hypothetical protein DORLON_02390 [Dorea longicatena DSM 13814]
 gi|149752361|gb|EDM62292.1| hypothetical protein DORLON_02390 [Dorea longicatena DSM 13814]
          Length = 1112

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 64/665 (9%), Positives = 173/665 (26%), Gaps = 106/665 (15%)

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A  +A  I  +I  +           + ++I V+V    D  +           Y I 
Sbjct: 320 EEAMAVAEEIRKLIRKER---------YRYREIGVIV---SDMNVYGDYLEQAFETYGIP 367

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF--------- 454
           V  + +  +  +  ++ L +L           S    L++ L  FS +++          
Sbjct: 368 VFMDHKRSILLNSFVEYLRSLLNMAEKNFSYESVFRFLRTNLAGFSYEEVDELENYVIGL 427

Query: 455 -----------KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH-------IAQ 496
                       I   +   E   E +  +    + K  +++  + +             
Sbjct: 428 GIRGYKDWQNRWIRRMKGMEEEELERLNHYRVQMVEKVDNLMFVLKQKRKTVKDITLAVY 487

Query: 497 FCSPHDFFTLILGAKKGRQQFISRF-----GNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                +     L   +               +++  ++ E  +  +         L E  
Sbjct: 488 EFMVQENIQERLKKTEEEFHEAGELALAKEYSQIYRIIIELFDKFVALLGEEPVGLSEYC 547

Query: 552 SELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
             L+      +        ++V    +   +  +   +F V           ++   +  
Sbjct: 548 KLLDAGLEEARVGVIPPSVDQVVAGDMQRTRLKDIRALFFVGANDCFLPGALLRTGLLSE 607

Query: 611 SLNDDPGIPIWIPQSKSRNNIV-SDLIKHLKKSTQEEYNRLLY---VGMTRA-------S 659
              +          +  +          ++  +   E  ++ Y       +A        
Sbjct: 608 RDREKFRQADHALSAGGKEKAYVQKFYLYMNLTKPSEKLKVYYSKVSADGKALRPSYLIQ 667

Query: 660 DQLIICKHSNTSN--------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           + L +       +        ++ + +     ++      +  V   +L     KD    
Sbjct: 668 ELLRLYPDVKVRDEDEKELVQKELTEKTGVKYLIRGLQEKNLDVTWQELYTWYQKDPKWK 727

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
            +             E+ + + + +Q   +     I              +    +    
Sbjct: 728 EKVDELLTAWYYRRPEDPLSESVAKQLYGENFEGSITRMERYASCACAHFLAYGLRLKER 787

Query: 772 SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
           S+    +  + G + H  L++                      +   ++ K L+      
Sbjct: 788 SVYEF-KAVDLGNVCHSALELFSKKASE----------AGGWTILTEEQRKELIDECVEA 836

Query: 832 LENPMMTTAMSCDSYSEVSVSGK--------------------INCPKKDIIISGRIDQ- 870
                  + +   + +E  +                       +    +     G+ID+ 
Sbjct: 837 AITDYGNSVLYSSARNEQLIVRMKQMLERTVWALTNQLKAGDFVPEAYELRFFGGKIDRV 896

Query: 871 -ISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCL 923
            +  +++ ++  + +YKT       I  + +    QL IY        K  +P K +V  
Sbjct: 897 DVCETEEQVYVKVMDYKTGSKAFDIIA-LYHGLQLQLMIYMDAAIEFQKKRHPEKEVVPA 955

Query: 924 --LIY 926
               Y
Sbjct: 956 GVFYY 960


>gi|218134062|ref|ZP_03462866.1| hypothetical protein BACPEC_01952 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991437|gb|EEC57443.1| hypothetical protein BACPEC_01952 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1091

 Score = 89.2 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 79/679 (11%), Positives = 171/679 (25%), Gaps = 156/679 (22%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + IA  I  +              I+ +DI V+     D      L   +     I    
Sbjct: 321 QFIAAEILRLTREQ---------GIRYRDIAVV---SADIETYGMLAANIFEQNDIPAFV 368

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR----HE 462
           + +  + ++  I+ + +    I S     S    L+S +   + ++   +          
Sbjct: 369 DYKRNIMNNPMIEFMRSGIAVIESGYSYESMFRFLRSGITAITPNETDLLENYCLALGIR 428

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIA----------------QFCSPHDFFTL 506
               +           ++ +  +  ++EL +                     S  +    
Sbjct: 429 GRKRWYSQWDRNYIKKNREKADLTQLNELRYRTVKILEPLDRAYTAASGTTVSVGELLEA 488

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           +                     L+E      +  Q     +               +   
Sbjct: 489 LYEFVAASDIEHKMNELADRLELNEENALASQYRQIYPKVMSLFDEIYSLLGEEKIKRKE 548

Query: 567 ------------------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                                + V I  +   +     V+F       +   K   K   
Sbjct: 549 FARLLDSGLEEIKVGLIPPTADCVLIGDMQRTRLDNIKVLFFAGVNDGIVPKKSENK--- 605

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                   GI   + +    N  V+      KK+        LY+ +T+ S +L +   +
Sbjct: 606 --------GILSELDRYILENASVTLSPDARKKAFI--ERFYLYMNLTKPSWKLYLTYAA 655

Query: 669 NTSNEKKSNQR-------------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
              + ++                 +       +      + K     +I   +    + +
Sbjct: 656 RGIDARERRPSYFVRTMYKLYPKLSMRTCDDMNNDMWLTIPKADKEWNIKDSQINLVQAA 715

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                 T +    T  +     +    L   +  D  + Y ++ S               
Sbjct: 716 ADALYGTDVRESVTRLEQFASCEFAHFLRYGLGLDERDVYTISASDT------------- 762

Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
                  G I+HK ++ I +         I S    +      ++   ++  +   +   
Sbjct: 763 -------GSILHKSMECISS-------EVIRS--GMSFADMKDEQRHEIVGRVVDTVAAE 806

Query: 836 MMTTAMSCDSYSEV----------------------------SVSGKINCP------KKD 861
                    S +E                             S   + + P      K+ 
Sbjct: 807 YGNAVFKDSSRNEYMIEKVKELTQRTVWAIGRQLEQEQFVPESFEVRFSLPMNESVSKRK 866

Query: 862 IIISGRIDQ--ISISQQNIFI--FEYKTHHHVPQEIEHIPYTH---IAQLSIYEKIL--- 911
           + + G ID+  +     NI+I   +YKT      E   +  T+     QL  Y       
Sbjct: 867 VELVGSIDRIDVCEDGDNIYIKIIDYKTG----NEKFSLYKTYYGLRIQLMTYMIAAMEH 922

Query: 912 -KDSYPNKSLV--CLLIYV 927
            K  +P K++V      YV
Sbjct: 923 EKKLHPGKNIVPAGAFYYV 941


>gi|290968023|ref|ZP_06559572.1| putative ATP-dependent nuclease subunit B [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781929|gb|EFD94508.1| putative ATP-dependent nuclease subunit B [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 1124

 Score = 88.8 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 78/714 (10%), Positives = 197/714 (27%), Gaps = 136/714 (19%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P   S  +    + + +S       +A  I  +               + KD L++V
Sbjct: 281 RPVPAVRSRATAGIHIWECTSKEAEIEGVAKKIIQLCRQG----------YRYKDFLLVV 330

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R  ++   +        + Y+I +  + +  +  H  ++ +++L +   +     +   +
Sbjct: 331 RTSEEYNQLAERI---FSMYRIPLFSDYQRPMASHPIVETVVSLLQVFRTSWTYEALFQL 387

Query: 441 LKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANCGISKF---------QHVIKYI 488
           LKS LF  S DD   +   C         +   + + + G             + V   +
Sbjct: 388 LKSDLFPISRDDADALENYCLAYGIQGGQWLADKAWYDDGTDARTASGINRIRRQVRDLL 447

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV------------------LD 530
                 ++       +  +L     R Q  +       +                   L 
Sbjct: 448 LPCWQESRSSHTLQTWCTLLYTWLKRLQVPATLRRWRQEDADAGCPGEAKEHEQVWKELL 507

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVF 589
            FL   +         L++    LE    T+K +      + V + +V     L+   VF
Sbjct: 508 AFLQEIVTLCGEEEMGLEDFAVILEDGLKTLKFSLIPPTLDHVTLTSVERGYTLQGKTVF 567

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +      +F  ++ ++        D     +               ++            
Sbjct: 568 ICGMNDGIFPKRNREEGLFH----DGERQQLEKAGLYLAPGSRFRSLQ---------EKY 614

Query: 650 LLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           L Y+ +TR+  ++ +    ++ S   +        ++   + +  R     ++       
Sbjct: 615 LFYLAVTRSLQEVYLTYALADESGAAREPSLWIRQLLERGYVDGVRTVSDGISPGEEAAA 674

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS-------------------PIKN 749
             + E +            +  +       +  +L                         
Sbjct: 675 ITSAEAAVRLLPGQLQPAVDGGEVAPVWWALYDQLLRTSQKQAVRQAVRGLFHTNVAAPL 734

Query: 750 DINEPYIL---------NPSTIDTKGKTNLESLLS---DNQTFNR--------GLIIHKL 789
             +    L         + +  +  G              +   R        GL++H  
Sbjct: 735 TASVVRRLFAPQGILHGSVTKFEQYGTCPFAFFARYGLQLEARQRYRFVAPDLGLLVHGA 794

Query: 790 LQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT---RLLEN--PMMTTAM 841
           L+ +         + ++       +  +        ++   I        +    +   +
Sbjct: 795 LKYMGDALLREGKQWRDLEMRQIPEYCRQATEVTAPSVRQDILMSNAYFRHIKERLIQTL 854

Query: 842 SCDSYS---------------EVSVSGK--------INCP-KKDIIISGRIDQISISQQN 877
                                E++  GK           P    + ISG+ID++ + Q+ 
Sbjct: 855 IRTVRRLREFSEVSNFQMKGLEIAFGGKNGVWEPLQFTLPSGGKVSISGQIDRLDMLQEG 914

Query: 878 ----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE-KILKDSYPNKSLVCLLIY 926
               + + +YK+    P  ++ +      QL  Y    L+     K++   ++Y
Sbjct: 915 EISYVAVIDYKSGRKEPA-LQPVFLGLDLQLLTYMIVALRQL-GEKAVPAAVLY 966


>gi|296165191|ref|ZP_06847738.1| RecB family exonuclease [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295899380|gb|EFG78839.1| RecB family exonuclease [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 313

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 34/236 (14%)

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFN 781
              + D+ +   +  +   +       L+PS      +  L            + +    
Sbjct: 11  AADMTDQPQTLARPAARPASKPASKPALSPSRAADFKQCPLLYRFRAIDRLPEAPSAAQL 70

Query: 782 RGLIIHKLLQVIFTLPEHKR-KNFITSYCT-----------KNAKLWPAKEYKNLLLSIT 829
           RG ++H  LQ ++ LP  +R  +   +              + A  +   +   LL    
Sbjct: 71  RGSVVHAALQQLYALPAAQRGPDTALALLEPAWDQVVAAAPELAGEFEPAQRGQLLAEAR 130

Query: 830 RLL------ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFE 882
            LL      E+P       C+   EV ++          ++ G ID+I ++    + + +
Sbjct: 131 ALLSGYYRLEDPTRFDPQCCEERVEVELA-------DGTLLRGFIDRIDVAATGELRVVD 183

Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
           YKT    P       +  + Q+  Y   L  +         LIY+++ +V     +
Sbjct: 184 YKTGKAPPAARALAEFKAMFQMKFYAVALLRTRGVPPTRLRLIYLADGQVLDYSPD 239


>gi|210134553|ref|YP_002300992.1| hypothetical protein HPP12_0355 [Helicobacter pylori P12]
 gi|210132521|gb|ACJ07512.1| hypothetical protein HPP12_0355 [Helicobacter pylori P12]
          Length = 778

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/487 (11%), Positives = 133/487 (27%), Gaps = 82/487 (16%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLQTSGFDLSASPL----LDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   + +VD     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L K+ K         L Y+    
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EIALSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++  + H +       L       ++   E    
Sbjct: 480 ----------------ESETSKASNMLLELNLHIEPIKDAYTLFAPSPLKDYQEEEIKAA 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++                 +   L    +   +       S  D              
Sbjct: 524 IPKDFSF----------SASSLNAFLTCKRRFYYHYMKRFKESPKDENNS---------- 563

Query: 778 QTFNRGLIIHKLL-QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN---LLLSITRLLE 833
                G ++H+LL +                +  +  K    KE  +   +L  I     
Sbjct: 564 ---AVGSLLHELLKEAYEKDKNPYALEERLIWLLETRKNITPKERLDTLIVLKKIQAFYL 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT------- 885
                   +      + +        + ++  GRID+I  +    I + +YK        
Sbjct: 621 KE--KERFNTKIKI-LDLEKSFETIIQGVVFKGRIDRIDKTADNEIILLDYKFKNDLKLD 677

Query: 886 -------HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                      P EI  I   H  Q++IY   LK+      +      + + ++    + 
Sbjct: 678 NMSKTQRGSLNPIEIAQISTDH--QMAIYAFALKNLGYKDPIKAFFYDLRKGELVEEDEL 735

Query: 939 KLNKAFA 945
            L     
Sbjct: 736 ILQAKMD 742


>gi|330900322|gb|EGH31741.1| UvrD/REP helicase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 830

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 94/335 (28%), Gaps = 35/335 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +   + + + H++IDE QD S      +R+   +         + R     +
Sbjct: 521 TSPENLKHVSDPMLRPLAHLMIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTRVMLSDNFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G              R        L  +V+ + + +   +        DS
Sbjct: 635 HIVRAAPAIPGKKA-----------RASGPLQELLPVKVLDRDEDELAERVAEHYHDGDS 683

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +      S    R +  +  +I  D+      +R+             K           
Sbjct: 684 ILLLYRKSSEKARFSARLQALIDADSANDAQNRRIRTLT-----YHSSKGLQADAVFLLG 738

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 739 DCQHLTVSPYKNQVYRLAGLGDASDL--------QPFDTAQKDEVLRLAYVAITRSARHC 790

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                    +        A+  I++ +   + +  
Sbjct: 791 YWYIDESASSGDAVQMPKASDRIARDKPFFEDLRN 825



 Score = 38.7 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 88/314 (28%), Gaps = 41/314 (13%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  L A  R I  +   L    + +        DD   I   R  +  
Sbjct: 541 MIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 600

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL--------GAKKGRQQF 517
            +    +FA    S     +                +               A    Q+ 
Sbjct: 601 YF---MEFAKEFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIPGKKARASGPLQEL 657

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSAN 568
           +     +  +  DE       +  +  S L             + L+          + N
Sbjct: 658 LPVKVLDRDE--DELAERVAEHYHDGDSILLLYRKSSEKARFSARLQALIDADSANDAQN 715

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +R +T H++KGL++  VFL+     +    +  +++ +  L D              
Sbjct: 716 R-RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGD-------------- 760

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
               +  ++    + ++E  RL YV +TR++         + S+          D +   
Sbjct: 761 ----ASDLQPFDTAQKDEVLRLAYVAITRSARHCYWYIDESASSGDAVQMPKASDRIARD 816

Query: 689 FHNDERVKKIKLTN 702
               E ++      
Sbjct: 817 KPFFEDLRNKARVG 830


>gi|49257017|dbj|BAD24803.1| putative helicase [Vibrio cholerae]
          Length = 535

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 72/510 (14%), Positives = 147/510 (28%), Gaps = 93/510 (18%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           + F  L      +++  D    +R  I      +L+DE QDT+  Q++ + S+ +     
Sbjct: 104 VSFPALNRLAEYIVRTNDH---VRRSIRASYPIVLVDEFQDTTFAQYDFLSSVFKLSEA- 159

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                    + AVGD KQ I  + GA+     + +                  L L+ RS
Sbjct: 160 --------EVTAVGDYKQRIMGWAGAKGDVFHQFEADFS---------VERHSLLLNHRS 202

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           + +++  +  V +   + +                            V     S  N   
Sbjct: 203 SPELVR-IQHVIAQAIDHE----------------------------VREVQTSNINLIS 233

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                   S      A+ LA  IA    +++G          R +  ++  +LVR     
Sbjct: 234 GDAAWICCSYNINQEAAHLAEWIAN---DLLG----------RSLNPRNYSILVR--HKP 278

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                   +    + +S+          + ++K      + +L++E  + F  +L+  L 
Sbjct: 279 EDYEQQLSYYLAQHGLSLR---------NESVKIGQTTLQDLLAEELTILFSTLLRLGLV 329

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFT 505
             +     ++ +         +  +K       +    I  +  L+       +  D F 
Sbjct: 330 RRNAQAWNQLSSDIRILRNTNQEDEKALRQVERELTKFISTLRMLMQQPLTRENGRDVFE 389

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEF-LNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
             +          S F       L E  L        N   +       L          
Sbjct: 390 RTI-KFINSDDLRSSFSRYATGNLLEINLAALEEFFINCVDTQNSWAGLL---------D 439

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                N + +MT+H +KGLE      +      +               +          
Sbjct: 440 EFEGTNHIPLMTIHKSKGLEFDTTIFMGIDDNAW-------WSYKQGDKEGLSTFFVALS 492

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              +  I S   +  +++   ++  LL   
Sbjct: 493 RAKQRAIFSYCQQRGQRTNVADFYELLTAA 522


>gi|261839208|gb|ACX98973.1| hypothetical protein HPKB_0364 [Helicobacter pylori 52]
          Length = 778

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/493 (10%), Positives = 139/493 (28%), Gaps = 82/493 (16%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLETSGFDWSASPL----LDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +  +  SL++L+    Q      R   ++  ++R+M     +G++   + +VD     
Sbjct: 370 LKDTLTNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L                     +
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLF--------------------K 469

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            S ++++    + +++  +       ++    H +       L  S    ++   E    
Sbjct: 470 NSKEMVLSYIESETSKVSN------MLLELDLHIEPIKDAYTLFESTPLKDYQEEEIKAT 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++       +   L       ++ +                          +    D 
Sbjct: 524 IPKDFSF----SASSLNAFLTCKRRFYYHY-------------------IKRFKENPKDE 560

Query: 778 QTFNRGLIIHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLE 833
                G ++H+LL          +  +  +         + P +    L+    I     
Sbjct: 561 SNSAVGSLLHELLKEAYEKDKNPYALEERLIQLLETRENITPKERLDTLIALKKIQAFYV 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT------- 885
                   +      + +        + +   GRID+I  +    + + +YK        
Sbjct: 621 KE--KERFNAKIKI-LDLEKSFETTIQGVAFKGRIDRIDKTADNEVILLDYKFKSELKLD 677

Query: 886 -------HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                      P EI  I   +  Q++IY   LK+      +      + + K+    + 
Sbjct: 678 NMSEKQRGSLSPIEIAQISADY--QMAIYAFALKNLGYKGPIKAFFYDLRKGKLLEEEEP 735

Query: 939 KLNKAFAEISTKI 951
            L      + + +
Sbjct: 736 ILQTKMDYLKSSL 748


>gi|308063219|gb|ADO05106.1| hypothetical protein HPSAT_01795 [Helicobacter pylori Sat464]
          Length = 778

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/425 (12%), Positives = 116/425 (27%), Gaps = 73/425 (17%)

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           SL++L+    Q      R   ++  ++R+M     +G++   + +VD             
Sbjct: 378 SLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCD 437

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           + +  +L     +P  + +   + +    L K+ K         L Y+            
Sbjct: 438 LFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EMALSYI------------ 479

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                   +    +    ++    H +       L       ++   E     P++    
Sbjct: 480 --------ESETSKVSNMLLELDLHIEPIKDAYTLFAPTPLKDYQEEEIQAAIPKDFSF- 530

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
                        +   L    +   +       S  D                   G +
Sbjct: 531 ---------SASSLNAFLTCKRRFYYHYIKRFKESPKDESNS-------------AVGSL 568

Query: 786 IHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAM 841
           +H+LL          +  +  +         + P +    L+    I             
Sbjct: 569 LHELLKEAYEKDKNPYALEERLIQLLETKGNITPKERLDTLIALKKIQAFYVKE--KERF 626

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT--------------H 886
           +      + +        + +   GRID+I  +    I + +YK                
Sbjct: 627 NAKIKI-LDLEKSFETTIQGVAFKGRIDRIDKTADNKIILLDYKFKSDLKLDNMSERQRG 685

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              P EI  I   +  Q++IY   LK+    +S+      + + K+    +  L      
Sbjct: 686 GLSPIEIAQISTDY--QMAIYAFALKNLGYKESIKAFFYDLRKGKLLEEEEPILQAKMDY 743

Query: 947 ISTKI 951
           +   +
Sbjct: 744 LKYSL 748


>gi|21220149|ref|NP_625928.1| hypothetical protein SCO1653 [Streptomyces coelicolor A3(2)]
 gi|6119695|emb|CAB59506.1| conserved hypothetical protein SCI41.36 [Streptomyces coelicolor
           A3(2)]
          Length = 284

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 67/228 (29%), Gaps = 35/228 (15%)

Query: 751 INEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
              P  L+PS      +  L              ++   RG ++H +L+ +F  P  +R 
Sbjct: 2   ATAPASLSPSRAGDFMQCPLLYRFRVIDRLPEKPSEAATRGTLVHAVLERLFDAPAAERT 61

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY---------------- 846
                           +    +        E   +   ++                    
Sbjct: 62  APTARALVPGQWDRLRESRPEVGELFADDPEGERLAQWLAEAERLVERWFSLEDPSRLEP 121

Query: 847 --SEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
              E+ V  +++     + + G ID++ ++    + I +YKT      +        + Q
Sbjct: 122 AERELFVEAELDS---GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRPQYAEGA---LFQ 175

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           +  Y  ++            L+Y+    V  +  + +      +  K+
Sbjct: 176 MKFYALVVWRLKKVVPRRLQLVYLGSGDV--LTYDPVLADLERVERKL 221


>gi|261866494|gb|ACY02011.1| UvrD/REP helicase [Pseudomonas sp. J465]
          Length = 646

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 77/223 (34%), Gaps = 14/223 (6%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
             F  Q       + +        ++    +   ++ +           +          
Sbjct: 283 DAFKLQGEFSAAPLYEALYAQTGFIESIGIDIATLQPQ--ALSCPAQARSFSEALVLFWP 340

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKK--RDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
           ++E    +  ++ F          L +        I  ++    +H+LIDE QD S    
Sbjct: 341 YFERCLHEQGLMTFN----GAFQQLTRRLNAGEQGIAAQVLAPFSHLLIDEFQDISPQIV 396

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           + ++++       +   SS  +L A+GD+ QSIY + G+ P+  +   R    +      
Sbjct: 397 QWLQAVQR----AQTQQSSVVSLMAIGDDWQSIYGWRGSSPELFIDFDRHFPSKGRAKCS 452

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
              ++ L  ++RS   I+   + +    ++ Q  +  +    +
Sbjct: 453 A--VLTLANNYRSIEPIIRDAEALLGGVQHKQAKTSQAIKVTQ 493


>gi|330960996|gb|EGH61256.1| UvrD/REP helicase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 775

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 22/214 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRT 215
                   +  ++ + ++H++IDE QD S      IR+   +       +     +   +
Sbjct: 462 TSPQNLRQVSDEVLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPAMHTGRIAQHSS 521

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 522 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTKVMLSENFRSHQHIIDAAE 575

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G           ++   G    +     +    D       E +      
Sbjct: 576 HIVRAAPAIPGK----------KARASGAPQELLPVNVLDRNEDELAERVVEHYNDGDSI 625

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L      S  AR  A  +  +I  D       +R
Sbjct: 626 LLLYRKGSEKARF-AERLQALIDADAAMGAQGRR 658



 Score = 38.4 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 84/296 (28%), Gaps = 37/296 (12%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   +    + +        DD   I   R  +  
Sbjct: 482 MIDEFQDVSPQIVSWIRASLREIRRRGPAMHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 541

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +    +FA    S     +                +       A  G++   S    E+
Sbjct: 542 YF---MEFAKEFSSPATTKVMLSENFRSHQHIIDAAEHIVRAAPAIPGKKARASGAPQEL 598

Query: 526 ------IDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSANHN 570
                     DE     + +  +  S L               L+        A  A   
Sbjct: 599 LPVNVLDRNEDELAERVVEHYNDGDSILLLYRKGSEKARFAERLQAL-IDADAAMGAQGR 657

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +R +T H++KGL++  VFL+     +    +  +++ +  L D   +  +         
Sbjct: 658 RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGDANDLQPF--------- 708

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                      + ++E  RL YV +TR++         N  +          D V 
Sbjct: 709 ---------DTAQKDEVLRLAYVAITRSARHCYWYIDENAGSADSPQMPKASDRVA 755


>gi|229493655|ref|ZP_04387440.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229319616|gb|EEN85452.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 353

 Score = 88.8 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 84/265 (31%), Gaps = 42/265 (15%)

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES-- 772
           S   P     +          E   P    +           L+PS      +  L    
Sbjct: 41  SPPAPTELSDQPHSLPGVSSVELPTPTPTGATSHERPRSRPALSPSRAGDYKQCPLLYRF 100

Query: 773 ------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR-KNFITSYCT-----------KNAK 814
                   +  +   RG ++H  L+ +F LP   R  +                  + A 
Sbjct: 101 RAVDRIPETPTRAQVRGTVVHAALEALFALPTGHRVPDRAAELVRPAWERVSAESPEAAD 160

Query: 815 LWPAKEYKNLLLSITRL------LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI 868
           L P  E  + L  + +L      LE+P        ++  EV V  ++      + + G +
Sbjct: 161 LVPEGELDSFLDEVGKLVATYYTLEDPT---RFDAEA-CEVYVETELE---NGVRLRGFV 213

Query: 869 DQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           D+I ++    + + +YKT     +  E      + Q+  Y  +L  +         LIY+
Sbjct: 214 DRIDVAPTGEVRVVDYKTGKAPREFTESKA---LFQMKFYALVLLRTRGIVPAQLRLIYL 270

Query: 928 SEPKVF--IIPQNKL---NKAFAEI 947
           +   +       ++L    +  + I
Sbjct: 271 ASGSILTYAPDHDELIRFERTLSAI 295


>gi|120404435|ref|YP_954264.1| RecB family exonuclease [Mycobacterium vanbaalenii PYR-1]
 gi|119957253|gb|ABM14258.1| putative RecB family exonuclease [Mycobacterium vanbaalenii PYR-1]
          Length = 304

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 70/231 (30%), Gaps = 36/231 (15%)

Query: 748 KNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                    L+PS      +  L              +    RG ++H  L+ ++ LP  
Sbjct: 14  PTRPVRRPALSPSRASDFKQCPLLYRFRAIDRLPEPSSAAQVRGTVVHAALEQLYRLPAV 73

Query: 800 KRKNF---------ITSYCTKN---AKLWPAKEYKNLLLSITRLL------ENPMMTTAM 841
           +R                  +    A       +  LL     LL      E+P      
Sbjct: 74  ERGPATAAALVAPVWERLLAEQPSLAVDIEPALHGELLEQARALLSGYYRLEDPT---RF 130

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900
              S  E  V  ++       ++ G +D+I ++    + + +YKT    P+      +  
Sbjct: 131 DPQS-CEQRVEVEL---VDGTLLRGYVDRIDVAPTGEVRVVDYKTGKAPPEARALAEFKA 186

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           + Q+  Y   L  S         L+Y+++ +V     +   +        +
Sbjct: 187 MFQMKFYAVALLRSRGVLPSRLRLLYLADGQVLDYSPDL--EELERFEKTL 235


>gi|298345333|ref|YP_003718020.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 43063]
 gi|298235394|gb|ADI66526.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 43063]
          Length = 568

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 63/173 (36%), Gaps = 29/173 (16%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
            +   + D      +   +     LA  +   Y    ++  ++ ++D I     +L+   
Sbjct: 145 AKLTCLSDDGVMEALQAESGQIGRLATSI--EYSR--RERKIVTYDDQIRTALWILQDE- 199

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +    +      L+DE QD +  Q +++++L  +             +   GD  Q
Sbjct: 200 ---RVARLYENHFFAALVDEFQDLTPQQLKLVKALCGN------------NISYAGDLAQ 244

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           SI+SF GA+     R           +      ++L  SFRS   +L  V+ +
Sbjct: 245 SIFSFAGADASFTYR---------EISKSCGKQVKLIKSFRSAPAVLDAVNSL 288


>gi|326773434|ref|ZP_08232717.1| RecB family exonuclease [Actinomyces viscosus C505]
 gi|326636664|gb|EGE37567.1| RecB family exonuclease [Actinomyces viscosus C505]
          Length = 309

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 70/252 (27%), Gaps = 26/252 (10%)

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES-------- 772
                   + +  +                      L+PS      +  L          
Sbjct: 4   EPLTASSSSPQTGVRPTGPGASGRQGAGAGGGRRAALSPSRAKDFMQCPLMFRLRTVDRL 63

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT------SYCTKNAKLWPAKEYKNLLL 826
               +   ++G ++H +L+ ++ LP  +R            + +   K     +      
Sbjct: 64  PEPGSLATHKGTVVHGVLERLYDLPASERLPQAALELLPGQWASHREKNPEVMDLFEDAD 123

Query: 827 SITRLLENPMM--TTAMS-CDSYSEVSVSGKI---NCPKKDIIISGRIDQISISQQNI-F 879
            +   LE       T  +  +         ++         +++ G +D++ ++      
Sbjct: 124 QVETWLEEARGLIRTYFTLENPQRLEPAERELFVQTETGDGLLLRGFVDRLDVAPDGAMR 183

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
           + +YKT               + Q+  Y  +L            L+Y+ + +V  +  + 
Sbjct: 184 VVDYKTGRSPGTRFMEEA---LFQMRFYALVLWRLRGRAPARLQLVYLKDGRV--LTHDP 238

Query: 940 LNKAFAEISTKI 951
                    T++
Sbjct: 239 RLAELERTETRL 250


>gi|167836129|ref|ZP_02463012.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           MSMB43]
          Length = 384

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/381 (13%), Positives = 120/381 (31%), Gaps = 29/381 (7%)

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           M G     +      + A DI VLV+  +   L+  +       + I  V   +  +   
Sbjct: 3   MRGAREHAATLGGAPLAASDIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFAT 58

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
           L  + L  +   I +  D       L S  F      ++++     +   + +       
Sbjct: 59  LDAEQLERVLAAIDAPGDLRRLRSALASDWFGLDAAALWRLEQGDADPAGIEDASGDAGG 118

Query: 476 CG----------------ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                              +     ++       + +       +  ++   +  ++ ++
Sbjct: 119 NDGRVRAASASATALPGADADAMGWVERFSRYRLLWRERGFAVMWRTLVNELRIAERLMA 178

Query: 520 RFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRI 574
               E      + L E        +     +L+ L +  LE      +    ++ N V+I
Sbjct: 179 GPDGERRVTDVNHLAELTQARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQI 238

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           +TVH +KGLE  +VF                +      +D+ G  +              
Sbjct: 239 VTVHKSKGLEYAIVFCPFLNDGGLREPAGSGLPDAREYHDESGGAVLHYGC--DEEAAER 296

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHND 692
             +   +    E  RL+YV +TRA  +  +    + ++ + K++ +     +V  +  + 
Sbjct: 297 ASREAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDF 356

Query: 693 ERVKKIKLTNSINKDEWIAYE 713
           +   K    ++   + W A  
Sbjct: 357 DAWLKEPPEDAELAERWQALA 377


>gi|38637831|ref|NP_942805.1| helicase superfamily protein I [Ralstonia eutropha H16]
 gi|32527169|gb|AAP85919.1| putative helicase, superfamily I [Ralstonia eutropha H16]
          Length = 633

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 73/568 (12%), Positives = 156/568 (27%), Gaps = 92/568 (16%)

Query: 38  SMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLK 97
           +    + T    A++L                    L  K     + + +          
Sbjct: 94  ASRFDSLTFDAFAKSLVDRFGQALPNRWRPTADYGILFPKRAHWADFLQRASLALDNPFG 153

Query: 98  EKLKKS-----QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
           +   +       +    + +R                 +      +        L F  +
Sbjct: 154 QAAVQGLSVNYFERRHVLAERLPEAGWTSGNAGLWA-GQRFWDE-QLRGATRSHLTFP-M 210

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           +    +LL +  V+A +R  +    +H+ +DE QDT+  Q+++++++             
Sbjct: 211 LSRLAELLVR--VNASVRNALALTYSHVFMDEFQDTTEAQFDLVQTIFL---------GM 259

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
           P  L AVGD KQ I  F  A        ++               I L  ++RS+ +++ 
Sbjct: 260 PTILTAVGDNKQQIMRFALAMDDPFGAFEQTFG---------AQRIPLLSNYRSSPELV- 309

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSY 332
                                       RI  V    L                ++  + 
Sbjct: 310 ----------------------------RIQHVLAQALDTSAAHPQSKAAASISDACCAI 341

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
           +D     + A  LAR +A  +                 +Q  D ++LVR++ +      +
Sbjct: 342 WDFSSVNTEAQALARYVASQMRE-------------HQLQPNDFVLLVRQKAE--DYARV 386

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS--FVCMLKSPLFNFSE 450
                    I         L +  A      L   +     +L    + +  +P    + 
Sbjct: 387 LAPAFATAGIP--------LRNEAAYVGAQMLQELLTEPLSELVLLILRLACAPRGGLTW 438

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +               +  ++     +  F    ++I +     +  +        + A
Sbjct: 439 IEAQHALANLRGIAPTDDRARRVLAQDLDAFAR--RFIQQHPQPPETEAMARAVIQEVEA 496

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
             GR   I+                    E  +  +L    S ++               
Sbjct: 497 FLGRDALIAAHTPYGQGGWLA--------EVENSLALHLQSSAVQATDWAATLDAYEGTK 548

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            + +MT+H +KGLE   V  +      +
Sbjct: 549 ALPLMTLHKSKGLEYHTVIFIGLDDSAW 576


>gi|317497578|ref|ZP_07955896.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895137|gb|EFV17301.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 1126

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 82/674 (12%), Positives = 186/674 (27%), Gaps = 125/674 (18%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              +R +A  I   +  +           + KDI+VL     D            +D  I
Sbjct: 321 RQESRTVANEIERFVREE---------GYRYKDIVVLT---ADLDSYQNELEKSFDDLHI 368

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---- 458
               +    L ++  I+ L+++ + I            LKS   NF+ ++   +      
Sbjct: 369 PYFVDVNRKLLNNPCIETLLSVLKMIQKDFSYDMVFRYLKSGFSNFTMEEADFLENYVLA 428

Query: 459 ------QRHETETVYEYIQKFANCGISKFQ-HVIKYIHEL------IHIAQFCSPHDFFT 505
                  R       +             +   I+ +  L                  + 
Sbjct: 429 CGIRGFARWNRPFASKLFSDEDVGRAEALRIRFIEEVGTLKTGLKRRGSTVKRKLIYLYE 488

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDE-------------FLNFTLRNEQNSYSSLQELIS 552
            +       +    +   E    L                L            S  + +S
Sbjct: 489 FLETLDVEGKMVKKQEMFEASGDLIAAATYAKVYEQVIDLLEQMAEILGEEKFSYDDFLS 548

Query: 553 ELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            LE     ++        ++V I  +   +  E  ++F +     V              
Sbjct: 549 VLESGLEEMQIGVIPPSLDQVMIGDMKRTRTEEVKILFFLGINEGVIP------------ 596

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             +  G  +   Q +       +L   +K+S   E   L Y+ +++ +D+L +      +
Sbjct: 597 AANGGGGVVNDHQREVLETYGINLAPGIKQSAYMEQFYL-YLTVSKPTDRLYLSYRMMDA 655

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
               +    + + +   F   +   + +   +    E    +      E    ER++  +
Sbjct: 656 AGNNNRPSYFIERIQRIFPKLKVTMQEEEVQTGYTREEALDQMILCLQEMEFDERDDDPE 715

Query: 732 QLMDEQKIPKKLFS--------PIKNDINEPYILN------------------------- 758
           ++   Q +   L            +   N+   L+                         
Sbjct: 716 KMKWMQTLYHALKELEPVGDYVDARFYTNQALPLSKELIHDLYGDTISGSVTRMEKFAGC 775

Query: 759 -PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF------TLPEHKRKNFITSYCTK 811
             S     G    + L+ +    + G + HK ++++          +  R  F+     +
Sbjct: 776 AFSHFMQYGLRLRKRLVHEILPTDMGKVFHKTMELVGKRSDWKFADDASRDEFVELMVEQ 835

Query: 812 NAKLWPAKEYKN------LLLSITRLLENPMMTTAMSCDSYS--------EVSV------ 851
                  + +++      +L  + R+  +     AM              E++       
Sbjct: 836 AVTDIQKELFESSHRNEYVLERMKRI--SKRAVWAMEQHIKRGDFTPEEYEIAFGEENHL 893

Query: 852 -SGKINCPKKDIII-SGRIDQ---ISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLS 905
            S        + +  SG +D+   I   +     I +YK+      +   I +    QL 
Sbjct: 894 DSMTFALEDGEKMFFSGVVDRMDSIEDDENKYLKIIDYKSGKQKF-DFAKIFHGLQMQLI 952

Query: 906 IYEKILKDSYPNKS 919
           IY   + + Y  K+
Sbjct: 953 IYMNAMMELYEKKT 966


>gi|289577483|ref|YP_003476110.1| ATP-dependent nuclease subunit B [Thermoanaerobacter italicus Ab9]
 gi|289527196|gb|ADD01548.1| ATP-dependent nuclease subunit B [Thermoanaerobacter italicus Ab9]
          Length = 1153

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 79/753 (10%), Positives = 194/753 (25%), Gaps = 151/753 (20%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           ++      +     D       R     ++  ++               +  S     + 
Sbjct: 257 EICQRNNISYEKPVDLNGGTPKRFRESEELSFLEKHFFSYPYKVYPSETKDISLFKAVNV 316

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +       AR I   + +             + ++  +I+V  R   D      L + 
Sbjct: 317 YSEVEET---ARDIIRLVRD-------------KGLRYSEIVVAAR---DLNRYHKLVKA 357

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
           + + Y I    + +  + ++  I  + +L    L +    S    LK+   N   +DI  
Sbjct: 358 IFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWSYESVFRYLKTGFANLEIEDISL 417

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQ--------------------------------- 482
           I           +  ++ A      ++                                 
Sbjct: 418 IENYVLANGIKGDKWKEEAWNYRLDYRFDRLTMEEEEKEIIEKVNEIKEKITIPLQGFYK 477

Query: 483 ------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
                 +V +    L               ++   K  +++  +    +V D++ + L+ 
Sbjct: 478 KFSKSKNVREACGTLYDFLVEMGLPQKIQKLIEKFKEEKEYDTANQYAQVWDIVVDVLDQ 537

Query: 536 TLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +        ++++    L                +EV + +V   K   +  ++++   
Sbjct: 538 LVEVIGGEKVTVEQFAKILSIGFDEYQIGTIPPALDEVLVTSVDRMKSHNAKALYIIGVN 597

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F   H  +  +     +          + ++  +              E   L+Y  
Sbjct: 598 DGIFPASHFDERILTDEDREILTSHDVELDNDTKTKVF-------------EEQFLVYTA 644

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +T  S  L I         K          +   F   ++   +   ++  ++       
Sbjct: 645 LTSTSKFLRISYPIADHEGKSMRPSIIISRLKKIFPKIKQFSNVVEMDTAEENLNRVSTP 704

Query: 715 STHHPE--NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--------------- 757
           S    E      + + T K       + K      +        L               
Sbjct: 705 SPTFNEMITAIKKWDVTDKIHPLWLDVYKWYAKNDRWKPRLTRALEGIYYTNQVEKVPAH 764

Query: 758 ------------NPSTIDTKGKTNLESLLS-DNQTFNR----------GLIIHKLLQVIF 794
                       + S ++          +    +   R          G+ +H +L    
Sbjct: 765 KMKKLYGDKLRFSVSRLEKYAACPFAYFVQYGLKARERKIYSFEPPDLGIFMHNILDRFS 824

Query: 795 TLPEHK---RKNFITSYCTKNAKLWPAKEYKNLLLSITR------LLENPMMTTAMSCDS 845
              E +    +     +C +   +      + +   I         L    +   +S   
Sbjct: 825 KALEEEELTWQEVDKEWCDEAVSIIVDDMIQKIPGYILNSSPRYKFLA-ERLKRILSNAV 883

Query: 846 Y---------------SEVSV-----SGKINCP---KKDIIISGRIDQI--SISQQNIFI 880
           +                EV+         I       ++I + GRID+I     +   +I
Sbjct: 884 WIVSEHIKRSSFKPVDHEVAFGDNQKYPPIKIELSNGEEINLIGRIDRIDIFKKEDEAYI 943

Query: 881 --FEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
              +YK+  +   ++  + Y    QL IY   +
Sbjct: 944 RIIDYKSG-NKTLDLSDVFYGLELQLLIYLDAI 975


>gi|167562259|ref|ZP_02355175.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           oklahomensis EO147]
          Length = 414

 Score = 88.4 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/408 (12%), Positives = 122/408 (29%), Gaps = 27/408 (6%)

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
             + A  I VLV+  +   L+  +       + I  V   +  +   +  + L  +   I
Sbjct: 13  EPLAASGIAVLVQTHRQGSLVKRVLAA----WGIGSVELAQASVFATIDAEQLERVLAAI 68

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV---- 484
            +  D       L S  F      ++++              +  ++ G ++        
Sbjct: 69  DAPGDLRRLRSALASDWFGLDAAALWRLEQGDAAQGDAEGAARDASDDGRARASASATAS 128

Query: 485 ----------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLD 530
                     ++       + +       +       +  ++ ++    E      + L 
Sbjct: 129 PSADADAMGWVERFSRYRLLWRERGFAVMWRTFANELRIAERLMAGQDGERRVTDVNHLA 188

Query: 531 EFLNFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           E        +     +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF
Sbjct: 189 ELTQARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVF 248

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                           +      +D+ G  +        +       +   +    E  R
Sbjct: 249 CPFLNDGGLREPSGSGLPDAREYHDEAGSAVLHYGC--DDEAAERASREAMREQAAERAR 306

Query: 650 LLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           L+YV +TRA  +  +    + ++ + K++ +     +V     + +   K    ++   +
Sbjct: 307 LVYVALTRAVYRCYLVAGTYVSSRSTKEARRSVLNWLVAGEGRDFDAWLKEPPEDAELAE 366

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
            W A           P+           E    +      +   +   
Sbjct: 367 RWQALAGGPVTLGALPVPAHREPLAAGHETGATQAARRATRGLRDAWR 414


>gi|304390837|ref|ZP_07372789.1| possible UvrD/REP helicase [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
 gi|304325720|gb|EFL92966.1| possible UvrD/REP helicase [Mobiluncus curtisii subsp. curtisii ATCC
            35241]
          Length = 1164

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 95/949 (10%), Positives = 244/949 (25%), Gaps = 141/949 (14%)

Query: 54   QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
            + A+  + + +    L+   L  +   +  + TQ   +   DL + + + +         
Sbjct: 131  RLATDAEVMVQIQDFLAEMPL--EEELRAALETQGFRR---DLVDGIFRVRAFAGDALSD 185

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV-LDFEDLIINTNDLLKKRDVSAWIRYK 172
                 +       +   +          +++   LD       T  L ++  ++      
Sbjct: 186  SAASPVHPLVTRLIKAMQSDREAKRSQARQSAWPLD-------TASLFEEYLLAVKAGAP 238

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
            + +    + ID++Q+ + +  +++                  TL A    +  + +F GA
Sbjct: 239  VPE---LVGIDDLQNFNGLMIDILSLWATH----------GTTLVACTLPETCVNTFRGA 285

Query: 233  EPKRVLREKRINQKRATNAG------QKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
             P    R  +  +             ++     L  ++R   + L  V  + +   N+  
Sbjct: 286  TPHLSERLWQQLETIPGKGAIEILLTKEHVPAPLRQAWRIAVNRL-GVHGISARLWNSAQ 344

Query: 287  LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS--- 343
             S  ++T         G+   + + +   +    +     +    + D   + S  +   
Sbjct: 345  ESSPASTETDSLCDADGRDRIILVEKSTDTAQYQEIGTLLQDAHIFSDRPLKYSQMAVLT 404

Query: 344  ---ILARRIAYTISNM-------IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                 AR++A  + NM         T  +      R +      V V       L     
Sbjct: 405  RSSREARQVAEVLENMDIPVVVPGATGQLNEGRLTRYLLKMMQAVCVEDCDQVKLSDLDL 464

Query: 394  RFLKNDY--KISVVGNDRF--ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
              L +       V    R    L D        +      +   D +     +       
Sbjct: 465  AGLLSSALVGWDVWRMRRMDSSLYDLRLQPPADSENAAGSTGVMDSADTADDEEGGIQIV 524

Query: 450  EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI--------AQFCSPH 501
             +  +     R       ++  +     IS      + +     +        A   S  
Sbjct: 525  GNLPYIQQFLRQVISGQNDFSGRSVPEIISALPDAAQLVDLAQALQSGWQQWKADSGSVQ 584

Query: 502  DFFTLILGAKKGRQQFISRFGNEVI------------DVLDEFLNFTLRNEQNSY-SSLQ 548
                 +       +   +R     +            D++ +        E  +   +  
Sbjct: 585  LLLWKLWDGLGRGEILQARALQPGLVPAVRSTLQIDLDLVMDLFKAADWFEARNPGKTAA 644

Query: 549  ELISELEQYPPTIKRAHSAN--HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            +    +             +   + V +++         P+V +V      +        
Sbjct: 645  DFAQGMLARDLPTGTVAPHHLVKDAVTVVSAAATVSQHWPLVAVVGLTDGNWPAMRWPGS 704

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
             +  S+ +          S +                 +   R  +  +TR + +LI+  
Sbjct: 705  ILGSSMFELENYGDPTNSSSAGYLW-----------NWQNEYRHFFTALTRCTQRLILGT 753

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVK---KIKLTNSINKDEWIAYEWSTHHPENTP 723
             +     + +   +    +        R+    +  +             W T   +   
Sbjct: 754  TAQDGVGRSTFLTSLVQTLQLEPKQHRRLPTNLRDFVAYLRAACLGGETSWGTPTIDAPI 813

Query: 724  LEREETIKQLMD-EQKIPKKLFSPIKNDINEPY----ILNPSTIDTKGKTNLE------- 771
                       D     P+     +    +E       +  S ++   +  L+       
Sbjct: 814  AAGLLAKLAAGDCPSAHPENWIGALPVSGDETESAEIRIYASGLERALENPLDYVLSWSG 873

Query: 772  ---SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP---AKEYKNLL 825
                          G I+H+  +++              +   +         +    L 
Sbjct: 874  YSNDEDDPYAANKVGNIVHEAAEILGR----------RYWWEGHGPRDDLEFEQVLTELR 923

Query: 826  LSITRLLE----NPMMTTAMSCD------------------SYSEVSVSGKINCPKKDII 863
              + RLL        + +                       S  EV    ++        
Sbjct: 924  QEVRRLLGPLSGETWVESNFRRHIETCLVPLATFLVNHQYPSRFEVRYPCRLEASSGKGA 983

Query: 864  I--SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
            +  + RID++  +   + I +YKT +        +      QL++Y+  
Sbjct: 984  LVYNARIDRVMFAHGRVIIMDYKTGNPSNFSAAKVAAN--LQLALYQAA 1030


>gi|322411788|gb|EFY02696.1| ATP-dependent DNA helicase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 605

 Score = 88.4 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 66/436 (15%), Positives = 125/436 (28%), Gaps = 91/436 (20%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
            +IR  +    + + +DE QDT+  Q+ ++++             S   L AVGD KQ+I
Sbjct: 197 EYIRKALQMTYDFVFLDEFQDTTYAQYNLLKTCFL---------GSSCKLTAVGDNKQAI 247

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
             + GA+P       R             +  +  ++ RS   ++               
Sbjct: 248 MRWAGAKPDIFPDYIRDF---------NSNEYQFLMNHRSVPKLVEF------------- 285

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                 ++ + + S H S        +     +L +  + S+ A
Sbjct: 286 --------------------QKEVHQILNSNHSSIQTNNYPEFQEGEITLFEFENESLEA 325

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             IA  I + I             I+  +I +L   ++     +       +   I    
Sbjct: 326 ELIANDIESKIQGG----------IRPSEICIL--AKQKVDDYSSKLITTLSSKGIKARI 373

Query: 407 N-DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP--LFNFS-EDDIFKICTQRHE 462
             +   L   L    L+ L      + D L +  +      +       D   +     E
Sbjct: 374 ENEYQELLKDLTCNLLLDLISCSQGKRDPLIWENISNFYGNINGIDEFTDELILAKSYKE 433

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +   I    +  I   + ++  I  +I           F+   G             
Sbjct: 434 IDNIVSDITYLISNFIPNEESMLNLIECIIEKIDEKRIISNFSTYNGKSDLYIIVK---- 489

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
                   + L       Q     L  + S                 N + IMT+H +KG
Sbjct: 490 -----NFSKLL--YKEYSQTQGEWLDIVSSF-------------KGENSIPIMTIHKSKG 529

Query: 583 LESPVVFLVDTGSQVF 598
           LE   V+ +      F
Sbjct: 530 LEYEAVYFLGLEDSAF 545


>gi|295402809|ref|ZP_06812745.1| UvrD/REP helicase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975155|gb|EFG50797.1| UvrD/REP helicase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 602

 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 23/144 (15%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   K  ++  ED++  +  +LK+  +   I   +  +   I +DE QDT+ IQ E+I
Sbjct: 189 YKKLCWKRGIIHHEDVLYFSYKILKEFPI---ILDCLSAKYPFIFLDEFQDTNPIQTEII 245

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + L                +  +GD  QSI+ F GA        +      +      F 
Sbjct: 246 KWLA----------YKGSVVGIIGDPAQSIFKFQGAS-------RNDFIAFSLPNQLNFK 288

Query: 257 IIELPLSFRSTADILTVVDKVFSI 280
           I     + RS+  I+ +++ +   
Sbjct: 289 I---TQNRRSSPSIVKILNFIRKH 309


>gi|258406097|ref|YP_003198839.1| putative DNA repair protein [Desulfohalobium retbaense DSM 5692]
 gi|257798324|gb|ACV69261.1| putative DNA repair protein [Desulfohalobium retbaense DSM 5692]
          Length = 913

 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/468 (10%), Positives = 119/468 (25%), Gaps = 54/468 (11%)

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGN 523
            +  + +                + +L     +    + F  +L +              
Sbjct: 372 FLARHGETDCPETARALHRFWARLDDLPRKQSWSQWAETFGEVLRSVGWPGASGQPSASY 431

Query: 524 EVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
           + ++   E L    + +Q    +   E +  LEQ          + H+ V+++ +  A G
Sbjct: 432 QAVEAWQECLEGLEQFDQVLEPAGYGEALQRLEQLARETLFQPESGHHPVQVLGLLEAAG 491

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
                ++++    +V+         +  +L     +P    Q + R              
Sbjct: 492 SRFDALWVMGLTDEVWPPAARPHPLLPHALQIHSDMPHCAAQRELRFA------------ 539

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                 R +   ++ A+ +++        + +        D    +           L  
Sbjct: 540 ------RQVTHRLSTAAPEVVFSLPQRDGDRELQPSPLLADHPRIARDELLPTTVPSLWE 593

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
            + +     +E     P      R       +  Q +                       
Sbjct: 594 QLGQAAEPHWELDEGAPALVEGTRLRGGTGTLKAQALC---------------PFQAFGR 638

Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQ--VIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
                  +           RG ++HK L+          + +          A+    K 
Sbjct: 639 FRLQAAAVRPPEPGITALERGNLVHKALETFWAEMQTRERLQGASAETIAATARKGAQKG 698

Query: 821 YKNLLLS-------ITRLLENPMMTTAMSCDSYSE--------VSVSGKINCPKKDIIIS 865
            + L            R LE   +T  +   +  E        V    ++        + 
Sbjct: 699 VEQLAERRPMTLTGRHRELEEDRLTRLLEQWAARELERTPFAVVEREHRVEASFAGARLR 758

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
              D++       + + +YKT      +    P     QL +Y  + +
Sbjct: 759 IVCDRVDRLDDGRLAVVDYKTGEIRVSDWFA-PRLLEPQLPLYALLAE 805


>gi|289678015|ref|ZP_06498905.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 425

 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 137/453 (30%), Gaps = 92/453 (20%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +I    +LL +  V+   R  +    +H+ +DE QDT+ +Q++++ ++            
Sbjct: 1   MIGRLAELLLR--VNPMARDALRLTYSHLFMDEFQDTTRVQYDLVSTIF---------RG 49

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
           +   + AVGD KQ I  +  A                           L  ++RS+ D++
Sbjct: 50  TETIVTAVGDNKQQIMRWAMAMDAPFSAFDADFG---------GVRTSLFNNYRSSPDLV 100

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
                                  I+H  ++   V  VQ   Q     D +         S
Sbjct: 101 R----------------------IQHVLAQALDVQAVQPVSQTDGTIDGES-------CS 131

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
             D    ++ A  LA+ +A  I+++              +  +D ++LVR++        
Sbjct: 132 ILDFPSPKTEARQLAQSVASYIADL-------------KLTPRDFVILVRQKAG--EYAE 176

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
           L      +  +++      +    L       + + +++      F+C+  +P       
Sbjct: 177 LLEPAFANENLALRNEAGMVGKVMLQELMTEEISKLVVN------FLCLSMTPRAGSYWS 230

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP------HDFFT 505
                             I    +   S+   V+      +       P           
Sbjct: 231 TCQNWLASMR-------GIDADDSIRQSRLARVLDTYATELAARYSLPPRSKVASRALVD 283

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            IL                    L++ L+ T  +          L S L     +     
Sbjct: 284 DILNFVGVEHVIRFNAAYGQGSWLEKVLDATAEH---------LLSSSLHSKDWSHTLDM 334

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
               + + +MT+H +KGLE   V  V      +
Sbjct: 335 YEGVHAIPLMTIHKSKGLEYHTVIFVGLDDGAW 367


>gi|312197574|ref|YP_004017635.1| hypothetical protein FraEuI1c_3758 [Frankia sp. EuI1c]
 gi|311228910|gb|ADP81765.1| hypothetical protein FraEuI1c_3758 [Frankia sp. EuI1c]
          Length = 347

 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 71/272 (26%), Gaps = 27/272 (9%)

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
               +   +    D   A   +            E           P             
Sbjct: 5   ATGAVPRADGQPADGQPASPDAVEDAALGASPTGEGASGEGAVGSGPAAPGDASVPGQRF 64

Query: 754 PYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR--KN 803
              L+PS         L              +    RG ++H +L+ +F LP   R  + 
Sbjct: 65  VGSLSPSRAADFVSCPLKYRFRVVDRLPEPPSPAATRGTMVHSVLERLFDLPPAGRTPEA 124

Query: 804 FITSYCTKNAKLWP-AKEYKNLL---LSITRLLENPM--MTTAMS-CDSYSEVSVSGKIN 856
            +       A L     E   +     ++   L +    +    +  D       + ++ 
Sbjct: 125 AVELLPAAWADLLAREPELAAMFPDGEALEAWLASARELLAGYFALEDPRRLAPAARELY 184

Query: 857 CP---KKDIIISGRIDQISI--SQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                   + + G +D++    +     + + +YKT        E      + Q+  Y  
Sbjct: 185 VEHVLGSGLRLRGYVDRLDEATTPDGLALRVVDYKTGRSPGPAFEGTA---LFQMRFYAL 241

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
           +L            L Y+ +     +  ++ +
Sbjct: 242 LLWRIRGVVPRELRLYYLGDRTWLRVTPDESD 273


>gi|168185693|ref|ZP_02620328.1| ATP-dependent nuclease subunit B [Clostridium botulinum C str.
           Eklund]
 gi|169296371|gb|EDS78504.1| ATP-dependent nuclease subunit B [Clostridium botulinum C str.
           Eklund]
          Length = 1135

 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 99/946 (10%), Positives = 251/946 (26%), Gaps = 196/946 (20%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI----KIRDRFNTYKMFKSTLASLTLAK 131
           +     K   T    +   +    +      +     ++R   N  +  +     +    
Sbjct: 101 KLKDELKIFATAANQEGFVNNISDIITELKRYDVTPSELRVSLNLIEEDEFLKDKINDIS 160

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           Y+   ++E+  K   +D ED +      +    +              + +DE    +  
Sbjct: 161 YIFEQFQESLHK-NYIDSEDELTLLYKKMDTSKMFDDA---------EVWVDEFSSFTPQ 210

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+++   LT+             +L    D  ++I    G +     ++    QK     
Sbjct: 211 QYKIFEKLTKKA--------KQVSLTLCMDYYKAI---DGTDVFAPTKKTE--QKLIKIL 257

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +    I           I+ + +   +  +++  L        ++              
Sbjct: 258 EENGITI--------DKPII-LNNNHINRFKDSSELKYLEENYFKY-------------- 294

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  +S  + +     + +  +            IA  I+ +           K  I
Sbjct: 295 -PYKPYSESTEDIKIIRALNPYSEV----------ENIAKEIAKI---------SMKNSI 334

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + +DI V+ R   D      + + + ++Y+I    + +  + D+  I  + ++       
Sbjct: 335 RYRDIAVITR---DLEGYEKIVKTIFDEYEIPYFIDKKKEIDDNPLIVLITSVIEIFNKS 391

Query: 432 EDDLSFVCMLKSPLFNFSEDD--------IFKICTQRHETETVYEYIQKFANCGISKFQ- 482
               +    LK+ L N S+++        +      R + +  +EY  +     +++ + 
Sbjct: 392 WSYEAMFRYLKTGLSNISKEEVDLLENYVLAYGIRGRKKWQYAWEYGNENILEQVNEIRI 451

Query: 483 -------HVIKYIH----------ELIHIAQFCSPHDFFTLILGAK--KGRQQFISRFGN 523
                       +            + +       ++     +     +G Q     +  
Sbjct: 452 KVSEPLIKFASKLKGKSKADEICSAVYNFLCSIGVNETIEKWVHKFKNEGNQALAKEYSQ 511

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKG 582
               V+ E L+  +   +     L++ +  L       K        ++V +  V   + 
Sbjct: 512 IWNMVI-ELLDQVVEVFKEEELQLKDFVKILSLGFKDYKMGLIPPSLDQVLVSDVERVRT 570

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            +  +++++     +F                D GI     +   +   +        K+
Sbjct: 571 HDIKLLYIIGVNDGIFPAVSK-----------DEGILSDSDRGSLKKMGIEIAEDTKSKA 619

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E   L+Y  +T     L IC        K              F            +
Sbjct: 620 --FEEQYLIYRTLTTTQKYLRICYSIADYEGKALRPSIIVTRFKSLFPKIAEESDNITMD 677

Query: 703 SINKDEWIAYEWSTHHPENTPLEREET--IKQLMDEQKIPKKLFSPIKNDINEPYILNP- 759
           S  ++  +             + R E   +K       + K      K       + +  
Sbjct: 678 SEEENIELISREIPTFNNLVSVLRREDNKVKVSPFWSDVYKWYSENPKWKETVDTVFSAI 737

Query: 760 --------------------------STIDTKGKTNL-----------ESLLSDNQTFNR 782
                                     S ++   +              E  +      + 
Sbjct: 738 SYTNAVDDISEEKIRKMYGNKLYLTVSRLEKYAQCPFGYYIKYGLKAKERKIFALTPPDL 797

Query: 783 GLIIHKL---LQVIFTLPEHKRKNFITSYCT----------------------KNAKLWP 817
           G  +H +             K       +C                          K + 
Sbjct: 798 GTFMHNVIDEFSETVDKSGIKWYEIEDKWCKDTVSEIVDRKAEESAGGIFTSSARYKYFT 857

Query: 818 AKEYKNLLLSITRLLEN---PMMTTA-----MSCDSYSEVSVSGKINCPKKDIIISGRID 869
            +  + L+ +I  ++E+                 D      +  +++   + + + GRID
Sbjct: 858 ERLKRVLIKTILVIIEHLKRSGFQPIGHEVGFGNDEKYP-PIEIQLS-SGEKVKLIGRID 915

Query: 870 QI----SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           ++       +    I +YK+  +    +  + Y    QL  Y   +
Sbjct: 916 RVDKLDMEKKDYYRIIDYKSG-NKDFSLSDVYYGLQLQLLTYLDAI 960


>gi|17545908|ref|NP_519310.1| hypothetical protein RSc1189 [Ralstonia solanacearum GMI1000]
 gi|17428203|emb|CAD14891.1| probable homologous recombinational repair protein [Ralstonia
           solanacearum GMI1000]
          Length = 962

 Score = 88.1 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 66/662 (9%), Positives = 159/662 (24%), Gaps = 110/662 (16%)

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                 A+    ++     H + R      +  W +  +          E+         
Sbjct: 241 IGYDWQAREPVPEAAAPATHGAFRTLL---LHAWPECGTVAPQAVEASAEAERPPPGLRI 297

Query: 338 QESSA-SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
             ++     A   A+T+ + +                              ++    R L
Sbjct: 298 ASAARFEDEAAFAAHTLVDWLNAGRRSLALV----------------AQDRIVARRVRAL 341

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF---------- 446
                + V     + L+   A   LM     +    D  + + +LKSP            
Sbjct: 342 LARVNVPVRDETGWKLSTTRAAAALMRWIDVVQGDGDTAALLDLLKSPFCLRDAEAPSSV 401

Query: 447 -----------------NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                            +     + ++   R     V E           +    +  + 
Sbjct: 402 APAWVAELERRVRRHNVSGGWGRLRRLVALRGTDTDVAEAADTGDGPPAGRLAERLGLLA 461

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR--------NEQ 541
           +     +          +        +   R G +  D   + L++  R         + 
Sbjct: 462 DEAAQWRRAGHATLEAWVTLLAGTLDRLRMRAGLQNDDAGRQLLDWLDRLRVSVHGSADA 521

Query: 542 NSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +  SLQE  + L                   V I+ ++ A+      V +V        
Sbjct: 522 GARFSLQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVGCDDAQLP 581

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
               + +     +  + G+P                    +     E             
Sbjct: 582 SAQPEWLFFSNDVRRELGLPD------------RAQRFAQQARDLAEVLL--------NQ 621

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            ++++    +    + +    W + +            + +          A + +    
Sbjct: 622 PEVVLTWQRHGGRGEPNRLSGWLERLQRRLAAAGMRIDVPVVL-------PALQTARQPT 674

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
           +         +   +           P +  +     L            LE +  + + 
Sbjct: 675 DMPAPAAPVLVPSTLSAAAYNSLRRCPYQFFVGRMLRL----------GELEEVSDELEK 724

Query: 780 FNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPAKE--YKNLLLSITR 830
            + G ++H +L                 R   + +   +      A++            
Sbjct: 725 RDIGEVLHAILHRFHRQLLDTPMADPADRLALLQALTDERFAPLLAEDGHALRFYRRWQG 784

Query: 831 LLEN-PMMTTAMSCDSYS----EVSVSGKINCPKKDII-ISGRIDQISISQQ-NIFIFEY 883
           ++ +      A   D +     EV     I  P    + + GRID+I    +  + + +Y
Sbjct: 785 VMASYLAWQAAREADGWRFEAGEVDADASIALPGAQALRLRGRIDRIDTHPEHGVAVLDY 844

Query: 884 KT 885
           KT
Sbjct: 845 KT 846


>gi|256005662|ref|ZP_05430619.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|255990350|gb|EEU00475.1| UvrD/REP helicase [Clostridium thermocellum DSM 2360]
 gi|316941015|gb|ADU75049.1| UvrD/REP helicase [Clostridium thermocellum DSM 1313]
          Length = 579

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 60/160 (37%), Gaps = 23/160 (14%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++D  D++  +  L++K     +I   +  +  +  IDE QDT+ IQ  +IR +     
Sbjct: 205 GIVDHNDILYFSYKLIEKYP---FIIQILRAKFPYFFIDEFQDTNPIQLSLIRKI----- 256

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +  +GD+ QSIYSF GA   +  +                    +  + 
Sbjct: 257 -----GQKETIVGVIGDKAQSIYSFQGASMTQFEKFY----------LPNLIDYVMVDNR 301

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
           RST  I+ V++ +    +  +    +    +     R   
Sbjct: 302 RSTNQIVDVLNLIRKDIQQNKFRKVEGDLPVILVGDRNKG 341


>gi|313904429|ref|ZP_07837806.1| ATP-dependent nuclease subunit B [Eubacterium cellulosolvens 6]
 gi|313470765|gb|EFR66090.1| ATP-dependent nuclease subunit B [Eubacterium cellulosolvens 6]
          Length = 1155

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 80/739 (10%), Positives = 202/739 (27%), Gaps = 141/739 (19%)

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
            +  +      ++ Q        R IA  I  M+  +           + +D  V+     
Sbjct: 304  EAYAGEQKEITVTQAKDPEQEIRMIAEQILRMVRRE---------GYRYRDFAVV---SG 351

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            D      L   + ++  I    + +  +  +  ++ + +    ++      S    L++ 
Sbjct: 352  DLSTYGRLAENVFSECGIPFFVDQKKAVMTNPMVEFIRSAIDMVVQNYSYDSVFRFLRTG 411

Query: 445  LFNFSEDDIFKI--------CTQRHETETVYEYIQKFA--------NCGISKFQHVIKYI 488
            L + S ++  ++           R + +  +    ++         N    KF    +  
Sbjct: 412  LGDLSREETDRMENYCRALGIRGRKKYDESWTRCPRYMDKDELLLYNEIREKFADETREF 471

Query: 489  HELIHIAQFC--SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE--------------- 531
            HE +H       S  +    +L     +++  +       +  D                
Sbjct: 472  HEAMHRRNTTVKSKAEAVYRLLAGHGIQRKM-AEMKLCFQENGDAVSAGEYGQIYGAVID 530

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFL 590
             L+  +         L +  S L+     I         ++V    +   +  +  V+F 
Sbjct: 531  LLDKIVEVLGEEKMKLADFQSILDAGFEEINIGLVPPGEDQVMTGDIERTRLRKIRVLFF 590

Query: 591  VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  +       K  +                  S             K    +    
Sbjct: 591  AGVNEGIVPKPVAAKGILSEHDRQILAGDSVELSPTS-------------KEQMYQQRFY 637

Query: 651  LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL---------- 700
            LY+ MT+ SD+L +    +              +V   +   E     ++          
Sbjct: 638  LYLSMTKPSDRLCLSYSRSGVEGGALLPSYLIGVVKRLYSRLEIRSAEEIYRKDPTLLLE 697

Query: 701  ----------------TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                             + +   ++     +    E    E +  +  +  +        
Sbjct: 698  TPKGRMSLLLQGLQKIPDELPGADFNELLRTLWQSEEGREEAQRLLSAVSTKNPAKGIGM 757

Query: 745  SPIKNDINEPYILNPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQ-- 791
               +    +   ++ + ++   + +    L            +    + G I+HK L+  
Sbjct: 758  QLARMLYGDKLQVSITRLEDFAECSFRHFLDYGLRLREREEYEFNAADYGSILHKALERY 817

Query: 792  ---------VIFTLPEHKRKNFITSYCTKNAKLW------PAKEYKNLLLSITRLLENPM 836
                        TL + +R         + A  +       ++  +++L  I  +L    
Sbjct: 818  AKILGKREIRWGTLGDGERNRVADEALDEVAFDYGNTIMQSSQRNRHMLERIREILH--R 875

Query: 837  MTTAMSCDSY--------SEVSV-------SGKINCPKKDII-ISGRIDQI--SISQQNI 878
               A+              E          S   +      + ++G +D+I    ++   
Sbjct: 876  TVWALDEQIRMGSFEPTDFEFRFRTNEEVKSLHFSLEDGTEMKLTGTVDRIDDCRTEGGH 935

Query: 879  F--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVSEPKV 932
            +  I +YKT      ++  + Y    QL++Y   +    + + P   ++   I+      
Sbjct: 936  YVKIIDYKTGKTT-LDLGQLYYGLQLQLTVYLNAVMECRQKAEPGAEVLPAGIFYYHIDD 994

Query: 933  FIIPQNKLNKAFAEISTKI 951
              I     ++   EI  K+
Sbjct: 995  PWIEPTAEDQRLEEILKKL 1013


>gi|34556981|ref|NP_906796.1| hypothetical protein WS0562 [Wolinella succinogenes DSM 1740]
 gi|34482696|emb|CAE09696.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 732

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 60/504 (11%), Positives = 142/504 (28%), Gaps = 67/504 (13%)

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETV--YEYIQKFANCGISKFQH---VIKYIHELIH 493
            +          + I  I       + +  ++  + F      +F      +    E+  
Sbjct: 224 RIHTWVNEGIEPERIAIILPDERFADYLRLFDKERNFNYAMGERFSDSSLFLSLQKEIER 283

Query: 494 IAQFCSPHDFFTLILGAKKGRQ------QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +     P       L             +  S+   E   +L E +      E+   +  
Sbjct: 284 LESLPPPASLLE--LSPLGLEALRAFTLELESQGEIEASRLLQEGITLLAPLERILENRP 341

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              I  L       +R        +R+M +   +GL    V +VD    +      K + 
Sbjct: 342 PSEILRLLLKEFATRRIDDVGGGRIRVMGILETRGLNFDRVVVVDFNEGLIPKPSDKDLF 401

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           +  S+     +P  + +   + +    L++  K+S                         
Sbjct: 402 LNSSIRAKCHLPTRLERENLQKHYYLSLLRRAKESVLA---------------------- 439

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
                                F ++E+ +  ++   +    +   E         P E +
Sbjct: 440 ---------------------FVSNEQNEPSRMLLELQTPIFSGKELYERTLFGAPREHK 478

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
             +++++D     ++ FS  +        L       +          +N++   G  +H
Sbjct: 479 GFVEEIIDSIPWERERFSHSRLQSFL---LCKRQYYYRYIRGYSQREEENESAWLGKTVH 535

Query: 788 KLL--QVIFTLPEHKRKNFITSYC--TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
           + L      ++ + KR+    S     +      A E +     + R  E          
Sbjct: 536 RWLKESFDPSISQKKRREHFLSLLQKERFPSAKLAFEARATAKKMERFFEREKERAKEGA 595

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI-A 902
                + +  ++    + I   G ID++    +  +I +YK    +  + E         
Sbjct: 596 Q---PLWLEERVEFEVEGIDFVGFIDRVDRVGEEYWILDYKLKKALKVDKERDLEKTSDF 652

Query: 903 QLSIYEKILKDSYPNKSLVCLLIY 926
           Q ++Y + L+        +    Y
Sbjct: 653 QFALYAQALRQRVGGAVAIRAFYY 676


>gi|254478457|ref|ZP_05091834.1| ATP-dependent nuclease subunit B [Carboxydibrachium pacificum DSM
            12653]
 gi|214035628|gb|EEB76325.1| ATP-dependent nuclease subunit B [Carboxydibrachium pacificum DSM
            12653]
          Length = 1200

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 91/776 (11%), Positives = 227/776 (29%), Gaps = 156/776 (20%)

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP--QESSASILARRIAYTISNMIGT 359
             G     +  +++     +  +   E +     ++   + ++       +A  I+ +I  
Sbjct: 313  KGIPKRFEHNKELAFLEKNFFSHPYEIYNEETKNISIFKATNMYSEVEEVARDIARLIRD 372

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            + +         +  DI+V     KD      L + + + Y I    + +  +T++  I 
Sbjct: 373  EHM---------RYSDIVV---ATKDLKRYYKLVKAIFSHYGIPHFIDLKINITNNPIIV 420

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-----------------CTQRHE 462
             ++++    L      S    LK+      +++I  +                    R +
Sbjct: 421  YVISIFEIYLKNWSYESVFRYLKTGFTGIDKEEINLLENYVLANGIKGNKWKERWEYRID 480

Query: 463  TETVYEYIQKFANCGISKFQHVIKY---------------------IHELIHIAQFCSPH 501
             +T    +++     I+K   V +                         L          
Sbjct: 481  YKTDSLLMEEREKQIINKVNEVRERVYLPLEKFYTRFSHSKNVKEACEVLYDFLVENKLP 540

Query: 502  DFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            +     +   K R +F  +    ++ D++ + L+  +        SL++    +      
Sbjct: 541  EKIEKFIEEFKNRGEFDTANQYAQIWDIVVDVLDQMVEVLGEEKISLEQFARLISIGFDE 600

Query: 561  IKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             + A      +EV + +V   K   S V++L+     VF     ++        +     
Sbjct: 601  YQIASIPPALDEVLVTSVDRMKSHNSKVLYLLGANDGVFPASSFEEGIFSDEERNLLSSL 660

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                   ++  +              E   L+Y  +T AS+ L I         +     
Sbjct: 661  DLELDRDTKAKVF-------------EEQFLVYTALTSASEFLKISYPIADHEGRSLRPS 707

Query: 680  TWYDMVYDSFH-------------NDERVKKIKLTNSI----------------NKDEWI 710
                 +   F              ++E + ++ +                        W+
Sbjct: 708  IIISRLRRIFPKIKVSTNIVEMDTDEENLNRVTVPLPTFNEMIKSFKKWNITGKIHPIWL 767

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                     +    + E+T++  + + +I +     IK    E    + S ++       
Sbjct: 768  EVYKWYRTKDEWKKKLEDTLEGFVYDNQIKRIPPLKIKKLYGEEMEFSVSRLEKYAACPF 827

Query: 771  ESLLS-DNQTFNR----------GLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLW 816
               +    +   R          G+ +H +L  I       E   +     +C     + 
Sbjct: 828  AYFVQYGLKAKERKIYGFEPPDLGIFMHNVLNEIAKALEKEELTWQEIDKEWCNDAVDII 887

Query: 817  PAKEYKN--------------LLLSITRLLENPMMTTAMSCDSYS--------EVSV--- 851
              +                  L   + R+L   +    +S             EV+    
Sbjct: 888  VEEMVDKIPGYILKSSSRYRYLANRLKRVLSKAV--WIISEHMKRSSFVPLGHEVAFGEN 945

Query: 852  -----SGKINCPKKDIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIA 902
                    +    ++I + GRID++ + ++     + I +YK+      ++  + Y    
Sbjct: 946  QKYPPIKIVLSNGEEIKLIGRIDRVDVLEKEGETYVRIIDYKSG-DKTLDLSDVLYGLEL 1004

Query: 903  QLSIYEKI-LKDSYPNK----SLVCLLIYVS-EPKVFIIPQNKLNKAF-AEISTKI 951
            QL +Y    L+ ++  K         + Y   +  +    ++  ++    EI  ++
Sbjct: 1005 QLLVYLDAILESAFEGKANLSP--AGIFYFKIDDPIVRADKDISDEELYKEIMKRL 1058


>gi|156841561|ref|XP_001644153.1| hypothetical protein Kpol_1053p32 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114789|gb|EDO16295.1| hypothetical protein Kpol_1053p32 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 614

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 94/660 (14%), Positives = 192/660 (29%), Gaps = 135/660 (20%)

Query: 9   LNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL 68
             E    +     P     ++ +++   L              +L   +    +++   L
Sbjct: 14  PYEPESTLKIIAGPGSGKTITLLHRVKKLIDSGIAKPDEILILSLTNKAVDNILDKLLDL 73

Query: 69  LS------SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR-----FNTY 117
                   S    ++  P   I++Q        L  ++    +  ++I +          
Sbjct: 74  FEQKNGNPSIEFAEENDPITRIVSQIGVYTIHGLANRIVIENEGLLEIIEENGWKVLMKL 133

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNC----------------VLDFEDLIINT----- 156
              +    S   A+     Y + K                    V+   +LII       
Sbjct: 134 VSSEFWKNSKPTAREFERLYNQYKNSPNGKDVVEKISKLMIVSKVVTNNELIIRASEHLL 193

Query: 157 -NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
             D              I  ++  ++IDE QD                     + S  + 
Sbjct: 194 SLDSFDDSKKGIEFTSTIKNDVKIVMIDEFQDL-----------YPTLLPLLTSISKGKR 242

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L   GD  QSIY F G          +   +       K   ++L  +FRST +I  + +
Sbjct: 243 LEIYGDTNQSIYQFLG----NNKEVIKAIDEIHPQD--KLVTLKLDDNFRSTPEITNLAN 296

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +         +++  T +   ++        VQ           + +            
Sbjct: 297 TI---------VNKYGTDSNYLKTGYSKSPSGVQPLVIQTQNSIEELD------------ 335

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                        I   I  +              ++  DI +L R      +I      
Sbjct: 336 ------------YIIERIVEL----------SCSSVKLSDIAILARTNAKLDMINNFI-- 371

Query: 396 LKNDYKISVVGNDRFILT-DHLAIKDLMALGRFI-------------LSQEDDLSFVCML 441
             +DY I       +    ++ +I+ L+ + + I              ++  D + + +L
Sbjct: 372 --SDYGIPTQKLSAYPEWVENPSIRFLIDILKIISVTSKQNNGEISYTNRTSDFNILSLL 429

Query: 442 KSPLFNFSEDDIFKICTQR-HETETVYEYIQKFANCGISKFQHVIKYIHELIH------- 493
            S +    +D + K+ ++      ++++ I   ++   S      K I E+         
Sbjct: 430 -SDINGIGQDSLQKLHSECLLRNISLWKQITSVSSSNWSVNPSSKKRISEVAKILLPQVE 488

Query: 494 ---IAQFCSPHDFFTLI--LGAKKGRQQFISRFGNEV---IDVLDEFLNFTLRNEQNSYS 545
              ++    P  F   +  L  +   +Q I     E+    + L+EFL      + N   
Sbjct: 489 SCTLSTIEEPLAFLETLCALANQLNSKQLIFNSEREMIKFQNNLEEFLKVLKLCKFNLPE 548

Query: 546 SLQELISELEQYPPT-------IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +  L   LE Y                    ++ + T+H++KGLE P V L+      F
Sbjct: 549 GVTLLDWFLETYLDQSLVLHNRSSHMDDKEQGKINLSTIHSSKGLEFPDVMLIGDLQNKF 608


>gi|291450479|ref|ZP_06589869.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291353428|gb|EFE80330.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 281

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 49/231 (21%)

Query: 757 LNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPE---------- 798
           ++PS      +  L              +    RG ++H +L+ +F  P           
Sbjct: 1   MSPSRASDFMQCPLLYRFRVIDRLPEKPSPAATRGTLVHAVLERLFDAPAAERTAPRATG 60

Query: 799 ----------HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS------ 842
                      +R      +  +  +  P +  +  L    RL+E        +      
Sbjct: 61  LLPGEWERLLAERPELAELFSGEEGESTPGERLERWLGEAERLVE-----RWFTLEDPTR 115

Query: 843 -CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900
              +  E+ V  ++      + + G ID++ ++    + I +YKT      +        
Sbjct: 116 LEPAERELFVEAELES---GLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRPQYAEGA--- 169

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           + Q++ Y  ++            L+Y+   +V     + +      +  K+
Sbjct: 170 LFQMTFYALVVWRLKGVLPRRLQLVYLGSGEVR--SYDPVMADLERVERKL 218


>gi|320329018|gb|EFW85017.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 813

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 95/334 (28%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +  ++ + ++H++IDE QD S      IR+   +         + R     +
Sbjct: 504 TSPENLKHVSDQMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSS 563

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   R             + + L  +FRS   I+   +
Sbjct: 564 LLCVGDDWQSIYGWRGSSPKYFMEFAREFS------SPATTRVMLSDNFRSHQHIIDAAE 617

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G              R   +    L   V+ + + +   +     +  DS
Sbjct: 618 HIVRAAPAIAGKKA-----------RASGMPQELLPVTVLDRDEDELAERVAEHYNDGDS 666

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +           R +  +  +I  D       +R+             K           
Sbjct: 667 ILLLYRKGSEKSRFSERLQALIDADAAMGAQGRRIRTLT-----YHSSKGLQADAVFLLG 721

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 722 DCQHLTVSPYKNQVYRLAGLGDASDL--------QPFDTAQKDEVLRLAYVAITRAARHC 773

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                  T          A+  I++ +   + + 
Sbjct: 774 YWYIDQGTGGGENAQMPKASDRIAQDKPFFEDLR 807



 Score = 40.7 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 88/306 (28%), Gaps = 37/306 (12%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   L    + +        DD   I   R  +  
Sbjct: 524 MIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 583

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +    +FA    S     +                +       A  G++   S    E+
Sbjct: 584 YF---MEFAREFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIAGKKARASGMPQEL 640

Query: 526 ------IDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSANHN 570
                     DE       +  +  S L               L+        A  A   
Sbjct: 641 LPVTVLDRDEDELAERVAEHYNDGDSILLLYRKGSEKSRFSERLQAL-IDADAAMGAQGR 699

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +R +T H++KGL++  VFL+     +    +  +++ +  L D                
Sbjct: 700 RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGD---------------- 743

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
             +  ++    + ++E  RL YV +TRA+          T   + +      D +     
Sbjct: 744 --ASDLQPFDTAQKDEVLRLAYVAITRAARHCYWYIDQGTGGGENAQMPKASDRIAQDKP 801

Query: 691 NDERVK 696
             E ++
Sbjct: 802 FFEDLR 807


>gi|166032802|ref|ZP_02235631.1| hypothetical protein DORFOR_02517 [Dorea formicigenerans ATCC
           27755]
 gi|166027159|gb|EDR45916.1| hypothetical protein DORFOR_02517 [Dorea formicigenerans ATCC
           27755]
          Length = 1134

 Score = 88.1 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 69/698 (9%), Positives = 186/698 (26%), Gaps = 123/698 (17%)

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           ++  +    +   ++  A  +          M     + +  + +  + +DI V+V    
Sbjct: 292 ERNIFRYSKECYKEKQGAVRIHVARNPREEAMKAAGRVRNLVRTKGYRYRDIGVIV---S 348

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
           +  +         + Y+I V  + +  +  +  ++ + +L   +       S    L++ 
Sbjct: 349 NMEVYGDDLGQAFDIYEIPVFMDHKRSILLNSFVEYIRSLLNMVKDNFSYESVFRFLRTN 408

Query: 445 LFNFSEDDIFKICT----------------QRHETETVYEYIQKFANCGISKFQHVIKYI 488
           L  F+  ++ ++                       + + E   +  N    +    +  +
Sbjct: 409 LSGFTYGEVDELENYVIALGIRGYKKWQESWIRRPKYLEEENLEILNHNRVRLVEKVDTL 468

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE-FLNFTLRNEQNSYSSL 547
             ++            T+ L     R++   +   +     +   L       Q     +
Sbjct: 469 VYVLRQRSKT--VKDVTMALYEFMVREELQLKLQRQSEAFQEAGELALAKEYSQVYRILI 526

Query: 548 QELISELEQYPPTIKRAHS------------------ANHNEVRIMTVHTAKGLESPVVF 589
           +     +E                                ++V +  +   +  +   + 
Sbjct: 527 ELFDKFVELLGDENVTMDEYLKLLDAGLEEARVGVIPPGIDQVVVGDMQRTRLKDIKALI 586

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            V           I+   +     D         +                     E   
Sbjct: 587 FVGANDTFLPGALIRSGLLTERDRDK----FATGKIHLSPGGKEKAY---------EQKF 633

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
            LY+ +T+ S+ L I     +++ K          +   F   E   + K   S  +   
Sbjct: 634 YLYMNLTKPSETLDIYYSKVSADGKSIRPSYLIQEMQRLFSGLEIEDEEKQAFSAQEWTP 693

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST---IDTKG 766
                            ++  ++L    K   +    ++  +   +   P+     +   
Sbjct: 694 KLGMQKVIRGFQDGNAMDQEWQELYSWYKRQPQWQYRVEELMKSGFYTRPADGLTKEVAK 753

Query: 767 KTNLESLLSDNQTFNR-----------------------------GLIIHKLLQV----- 792
           +   E          R                             G + H  L+      
Sbjct: 754 QLYGEHFQDSITRIERFSACAFAHFLTYGLRLRERQTYEFQPLDLGNVCHSALEYYSRKL 813

Query: 793 ------IFTLPEHKRKNFITSYCTK------NAKLWPAKEYKNLLLSITRLLENP--MMT 838
                    + E KR+ +I            N+ L+ +   + ++  + RLL      +T
Sbjct: 814 KEEHLSWTEIEEEKRQEYIDDSVEHAISDYGNSVLYSSARNEYMIERMKRLLTRTIWALT 873

Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI--SISQQNIFI--FEYKTHHHVPQEIE 894
             +    +  V+   +          +G+ID++     +  +++   +YKT       + 
Sbjct: 874 KQLEAGDFVPVAYEMRFE--------NGKIDRVDLCKDKDKVYVKVLDYKTGSKAFDVVA 925

Query: 895 HIPYTHIAQLSIYEKIL----KDSYPNKSL--VCLLIY 926
            + +    QL +Y        +  YP+  +    +  Y
Sbjct: 926 -LYHGLQLQLMVYMDAAVKMTQKHYPDSEVIPAGVFYY 962


>gi|163867330|ref|YP_001608524.1| hypothetical protein Btr_0025 [Bartonella tribocorum CIP 105476]
 gi|161016971|emb|CAK00529.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 1041

 Score = 88.1 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 76/626 (12%), Positives = 179/626 (28%), Gaps = 59/626 (9%)

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
           T  +  + ++   S+ A        N        +   ++ I+       +        +
Sbjct: 342 TDKWIQIVRDDYESLCADWSFIEAINEREEALAIAVALRKAIEEPQKTTALITND--RNL 399

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                     + I    +    L   L +  L  +   +   +D ++F+ +LK PL    
Sbjct: 400 ARRVAAELQRFGIEANDSGGIPLAQTLPVTLLRLILENVFQSDDPIAFLSLLKHPL---- 455

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
              + +   +  E    +E      N G        +++ + I              +  
Sbjct: 456 -TTLQQNRHRLREMAENFELFVLRGNTGRINLCECDQFLEKWIETYSHDHNFSEINALDQ 514

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLR----------------NEQNSYSSLQELISE 553
            K    + +     + ++ L   +                       ++  +SL  L   
Sbjct: 515 QKFEEARLLCHLLKKAVEPLASLMKQEKECTINEAAIATVEVFENFGRSEDNSLAHLYQH 574

Query: 554 LEQYPPTIK-RAHSANHNEVRIMTVHTAKGLESPVVF--LVDTGSQVFSHKHIKKMHIMP 610
                 +   R   ++ + +           E P VF  L+ T S   S     ++ I  
Sbjct: 575 EAGQALSNFLRELVSDQSGLTFH------LCEWPAVFSALIATRSVTPSPGGHPRLFIWG 628

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH--S 668
           +L         +              ++    ++     L    +     ++ +  H   
Sbjct: 629 TLESRLQTVDTVVIGGLNEGSWPISTRNDAFLSRPMKMML---TLEPPEQRIGLSAHDFQ 685

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                 K        + +        +++I+        + I             L+   
Sbjct: 686 WAMGMDKVVMSRALRVNHTPSIPSRWLQRIETVVGKQAWKQIRARGEILRHWTKMLDHTN 745

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPS-----TIDTKGKTNLESLLSDNQTFNRG 783
            I  +     +P     P    + E   L                 L+ L+ D     RG
Sbjct: 746 MISDVERPCPVPPLDGRPRHFSVTEIETLRYDPYAIYAKKILRLRPLKPLIHDPSAIERG 805

Query: 784 LIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR---------LLE 833
           ++ H +L      +      N +    T   K +    +   +  I           L++
Sbjct: 806 ILYHAILAAFCAQIKNPNAANALDVLLTLGRKEFDKFNFPPDIEVIWWNSFENLAPHLIQ 865

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQE 892
                +    + Y+EV VS KI+     + +SGR+D++ +     + I ++KT       
Sbjct: 866 WE--QSLGPRERYAEV-VSEKISIGTTGVTLSGRVDRLDVLPDKTVEILDFKTGTPPSS- 921

Query: 893 IEHIPYTHIAQLSI-YEKILKDSYPN 917
            + +      QL++    +++ ++P+
Sbjct: 922 -KQVRKLLFPQLALETALLMEGAFPD 946


>gi|167765656|ref|ZP_02437709.1| hypothetical protein CLOSS21_00144 [Clostridium sp. SS2/1]
 gi|167712631|gb|EDS23210.1| hypothetical protein CLOSS21_00144 [Clostridium sp. SS2/1]
 gi|291559892|emb|CBL38692.1| ATP-dependent nuclease, subunit B [butyrate-producing bacterium
           SSC/2]
          Length = 1126

 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 82/674 (12%), Positives = 186/674 (27%), Gaps = 125/674 (18%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              +R +A  I   +  +           + KDI+VL     D            +D  I
Sbjct: 321 RQESRTVANEIERFVREE---------GYRYKDIVVLT---ADLDSYQNELEKSFDDLHI 368

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---- 458
               +    L ++  I+ L+++ + I            LKS   NF+ ++   +      
Sbjct: 369 PYFVDVNRKLLNNPCIETLLSVLKMIQKDFSYDMVFRYLKSGFSNFTMEEADFLENYVLA 428

Query: 459 ------QRHETETVYEYIQKFANCGISKFQ-HVIKYIHEL------IHIAQFCSPHDFFT 505
                  R       +             +   I+ +  L                  + 
Sbjct: 429 CGIRGFARWNRPFASKLFSDEDVGRAEALRIRFIEEVGTLKTGLKRRGSTVKRKLIYLYE 488

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDE-------------FLNFTLRNEQNSYSSLQELIS 552
            +       +    +   E    L                L            S  + +S
Sbjct: 489 FLETLDVEGKMVKKQEMFEASGDLIAAATYAKVYEQVIDLLEQMAEILGEEKLSYDDFLS 548

Query: 553 ELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            LE     ++        ++V I  +   +  E  ++F +     V              
Sbjct: 549 VLESGLEEMQIGVIPPSLDQVMIGDMKRTRTEEVKILFFLGINEGVIP------------ 596

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             +  G  +   Q +       +L   +K+S   E   L Y+ +++ +D+L +      +
Sbjct: 597 AANGGGGVVNDHQREVLETYGINLAPGIKQSAYMEQFYL-YLTVSKPTDRLYLSYRMMDA 655

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
               +    + + +   F   +   + +   +    E    +      E    ER++  +
Sbjct: 656 AGNNNRPSYFIERIQRIFPKLKVTMQEEEVQTGYTKEEALDQMILCLQEMEFDERDDDPE 715

Query: 732 QLMDEQKIPKKLFS--------PIKNDINEPYILN------------------------- 758
           ++   Q +   L            +   N+   L+                         
Sbjct: 716 KMKWMQTLYHALKELEPVGDYVDARFYTNQALPLSKELIHDLYGDTISGSVTRMEKFAGC 775

Query: 759 -PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF------TLPEHKRKNFITSYCTK 811
             S     G    + L+ +    + G + HK ++++          +  R  F+     +
Sbjct: 776 AFSHFMQYGLRLRKRLVHEILPTDMGKVFHKTMELVGKRSDWKFADDASRDEFVELMVEQ 835

Query: 812 NAKLWPAKEYKN------LLLSITRLLENPMMTTAMSCDSYS--------EVSV------ 851
                  + +++      +L  + R+  +     AM              E++       
Sbjct: 836 AVTDIQKELFESSHRNEYVLERMKRI--SKRAVWAMEQHIKRGDFTPEEYEIAFGEENHL 893

Query: 852 -SGKINCPKKDIII-SGRIDQ---ISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLS 905
            S        + +  SG +D+   I   +     I +YK+      +   I +    QL 
Sbjct: 894 DSMTFALEDGEKMFFSGVVDRMDSIEDDENKYLKIIDYKSGKQKF-DFAKIFHGLQMQLI 952

Query: 906 IYEKILKDSYPNKS 919
           IY   + + Y  K+
Sbjct: 953 IYMNAMMELYEKKT 966


>gi|289422622|ref|ZP_06424464.1| ATP-dependent nuclease subunit B [Peptostreptococcus anaerobius
           653-L]
 gi|289156973|gb|EFD05596.1| ATP-dependent nuclease subunit B [Peptostreptococcus anaerobius
           653-L]
          Length = 1140

 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 110/907 (12%), Positives = 252/907 (27%), Gaps = 179/907 (19%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           ++  + L     +   YE+  +    +D ED  +  + L+   +               I
Sbjct: 151 RALASKLDDISRIYGAYEDLMQDK-YMDSEDGTVLFSRLIGSYEPLDGAS---------I 200

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG--AEPKRVL 238
            IDE    + +Q+ VI  L         +  +         + ++I S+ G  A+    +
Sbjct: 201 FIDEFTGFTPVQYLVIEKLILLSKKIYISLMT---------DMRNINSYRGVFAKTNSTI 251

Query: 239 REKRINQKRATNAGQKFSIIELPLSF-----RSTADILTVVDKVFSIPENAQGLSEDSTT 293
            +             +   ++    +     R     +   +      +  +  +++ + 
Sbjct: 252 MKINKFCIDNKVKRLEDIRVDDEEYYKKDELRFLESEIRFFNPKIYTGDTIKSSNDELSI 311

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                                   +    N  + S   +   +    +       IA  I
Sbjct: 312 EE----------------FGNNKLNIDNSNDDELSIDKFGIKISSFENRHREVEYIASVI 355

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            +++         K +  +   I+V  R   D      +T+ + +DYKI+   +D+    
Sbjct: 356 LDLV---------KNKGYRFGQIMVATR---DIDSYAHITKSIFDDYKINYFLDDKISAQ 403

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI--------CTQRHETET 465
            +  +  ++++     +     S    LKS + +   DDI  +           +   E 
Sbjct: 404 SNPVLVFILSILDMKNTNYSYKSMFTYLKSGILDLDGDDIALLENYVLANGIRGKKWFED 463

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQF------------CSPHDFFTLILG---- 509
            ++     +         V   I+++  +                +  D  + +      
Sbjct: 464 RWDLPVVHSVEDNPVDIEVQDRINKIKDLVMEPIIRLNEKLKGKNTLRDISSYLYEFTLD 523

Query: 510 -----------------AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
                                R +  S+  N  +DVLDE +        +    ++  I 
Sbjct: 524 IGLDKKIVDLVETFERKEDNYRAREYSQAWNIFVDVLDEMV----EFMGDEVIGIERYIK 579

Query: 553 ELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            L+             + ++V I  V   K  ++ V+ L+ T   VF         I   
Sbjct: 580 FLDLQFQGHELGIIPPSRDQVFITGVDRMKNPDTRVLILIGTNEGVFPKMVSDTSLITEM 639

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
              +         S   + +              +   L+Y  M+ A ++L I       
Sbjct: 640 DKSNLLEKGVKFDSDIVSKMY-------------DEEFLVYRAMSTARERLYITYPKGDV 686

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN---KDEWIAYEWSTHHPENTPLEREE 728
                   +  + +   F              I     D  I +        +  +    
Sbjct: 687 EGNSMMASSLVNKIRKIFPQISEEDLSDQVYDIGFKLGDREIDFSQDKTPKISIDIADLI 746

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
               +    K+ K    P             S     G       + +    + G   HK
Sbjct: 747 YGTPIFSVSKLEKFSSCPY------------SYFARYGLRARPRDVYEFSPMDAGNYYHK 794

Query: 789 LLQVIFTL---PEHKRKNFITSYCTKNAKLWPAKEYKN--------------LLLSITRL 831
           +L++        +    +   SY  +  ++  A+                  ++  + R 
Sbjct: 795 VLELFLRRIRSNDISWADVDLSYINREVEVLGARILDARSSYILNTSEKYRYMVRRLNRT 854

Query: 832 LE---NPMMTTAMSCDSYS---EV---------SVSGKINCPKKDIIISGRIDQIS---- 872
           L    + +              EV          +   I+  ++  +++G+ID++     
Sbjct: 855 LVDSIDAIGKQVRGGKLRPKGLEVTFGIKSELEPIRLNIDGAREG-LVNGKIDRVDSYID 913

Query: 873 -ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS------LV--- 921
             +      I +YK   H   ++E +      QL +Y   +   Y  +S      +    
Sbjct: 914 QETNTEYISIVDYKLSSH-DIDLEMVEAGLQLQLFMYMNAI--LYSKRSEFTRPGIKLKP 970

Query: 922 CLLIYVS 928
             L+Y  
Sbjct: 971 AALLYSR 977


>gi|320095789|ref|ZP_08027433.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977273|gb|EFW08972.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 267

 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 78/227 (34%), Gaps = 15/227 (6%)

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-------DNQTF 780
           E ++    ++ +           +    +L+PS  ++  +  L   L+            
Sbjct: 2   EGVRAAHPDRWMGAGGTPTTGAALTGEVVLSPSQFESALQCPLRWFLTTIGADGPGTAAQ 61

Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
           + G ++H + +        + +  +     +          +        +++N  + + 
Sbjct: 62  SLGTLVHDIAERHPNGTREQLRAALDERIGELGYDLGTWAGRRDHAHAYAVIDN--LASY 119

Query: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
           M+    + V V G +    + + I GR+D++      + + + KT  +     + +P   
Sbjct: 120 MAGVPGA-VDVEGTVAANVEGVTIRGRMDRVEHVDGGVRVTDIKTGRY-GYTAKSVPDN- 176

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN-KAFAE 946
             QL+ Y+  L        +   +  V   K  +  Q  L+ +A  E
Sbjct: 177 -PQLAAYQMALIAL-EQPVVGGRIALVGGDKERVFDQPALHGEALDE 221


>gi|163784742|ref|ZP_02179549.1| ATP-dependent exonuclease (exonuclease V) synthesis protein AddA
           (helicase and exonuclease domains) [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159879990|gb|EDP73687.1| ATP-dependent exonuclease (exonuclease V) synthesis protein AddA
           (helicase and exonuclease domains) [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 177

 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 10/150 (6%)

Query: 783 GLIIHKLLQVIFT--LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
           G+++H +L+ +    +   +    I        +L      +N    + + + +P+    
Sbjct: 27  GIVVHNVLEEVDFTNISLKQLNTLIKKQEKIIPELIKNVVMENSRKILRKFINSPLHKEL 86

Query: 841 MSCDS-YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH-VPQEIEHIPY 898
              +  + E+  +      + +  I GRID I      I + +YKT+ +   +E + +  
Sbjct: 87  KESNIIFRELPFT----LYENEKYIEGRIDIIYEKDGKIIVMDYKTNRYETEEEKQKVIK 142

Query: 899 THIAQLSIYEKILKDSYPNKSL--VCLLIY 926
            +  Q   Y K +K  +P K++     L++
Sbjct: 143 AYEKQKEYYLKAVKKIFPEKNIEFKLGLLW 172


>gi|315604158|ref|ZP_07879224.1| RecB family exonuclease [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313864|gb|EFU61915.1| RecB family exonuclease [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 294

 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 72/225 (32%), Gaps = 29/225 (12%)

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLL--------SDNQTFNRGLIIHKLLQVI 793
           +L +P   +      L+ S      +  L+  L         +++    G ++H +L+ +
Sbjct: 13  ELIAPSPAERTWDPALSASRAKEYERCPLQYRLHVVDGYREPESRAKALGTLVHAVLEDL 72

Query: 794 FTLPEHKR-KNFITSYC------------TKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
           F+LP   R ++   +                 A      + +  L     +++       
Sbjct: 73  FSLPPRSRTRDAARAQLAPAFEALTQKNPEVAALFGDEADREAWLEDARSVVD--GYFAI 130

Query: 841 MSCDSYSEVSVSGKINC-PKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPY 898
                 +  +   ++    K  + + G ID++  +    + + +YKT             
Sbjct: 131 EQPQWIAPAAREARVTATTKGGVRLLGFIDRVDRAPDGRLRVVDYKTGKAPSP---RYVD 187

Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
             + Q+  Y  +L            L+Y+   +V     +  + A
Sbjct: 188 EALFQMRFYALLLAR-TQVLPSRMQLVYLRAGQVITFDPDPTDVA 231


>gi|167771643|ref|ZP_02443696.1| hypothetical protein ANACOL_03015 [Anaerotruncus colihominis DSM
           17241]
 gi|167666283|gb|EDS10413.1| hypothetical protein ANACOL_03015 [Anaerotruncus colihominis DSM
           17241]
          Length = 1106

 Score = 87.7 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 75/684 (10%), Positives = 171/684 (25%), Gaps = 124/684 (18%)

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
            Q  P           +            IA  I  ++           +  + +DI ++
Sbjct: 284 PQETPAPYDGAPDGVQIAACEDVYDEIEYIAGEICALVRE---------KGYRYRDIALI 334

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R              +   Y I    + R  +  H  +  +      +  + D  + + 
Sbjct: 335 GRA---LEPYLVPLETVFARYDIPYFADRRVDIQVHPLVNGIFCALDAVRGRFDSEAVLA 391

Query: 440 MLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANCGIS----------------- 479
           + K+ +      +   +   C     + TV+         G+                  
Sbjct: 392 LAKTCISGIDAVEAGLLENYCFTWGVSGTVWAAPFVNHPDGMEGAFSDEQRERLSRINAA 451

Query: 480 ------KFQHVIKYIHELIHIAQFCSPHDFFTLI----------LGAKKGRQQFISRFGN 523
                   + +   +          + + +   +           G ++G  +       
Sbjct: 452 RAALIGPLERLADSLRGCDGRGFARAIYSYLEQVDAACRLRDYAEGMEEGDARRFLDLSA 511

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKG 582
           +V D +   L+            L  L   L          +     ++V   T    + 
Sbjct: 512 QVWDAVIGLLDVFGGALAGISLPLARLTDLLRLGVSTVDIGSLPQTIDQVIAGTADRIRP 571

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
                VF++     VF                  GI     + + R   V  L    + +
Sbjct: 572 NAPRAVFVIGLNEGVFPLWSSPS-----------GIFSAAERERLRTQGVDLLRTPEQTA 620

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                   +Y  +T+AS+ L +      +        +  D V        R        
Sbjct: 621 LF--ERYYVYFALTQASEALWLTYPLRDAAGAARTASSAVDEVRALVGAPARGSAGGALA 678

Query: 703 SINKDEWIAYEWSTHHPENTP-------------LEREETIKQLMDEQKIPKKLFSPIKN 749
               +         H  ++TP               R  T++ L   +    +     + 
Sbjct: 679 RAAGERSAFDAMMRHWRDDTPETAVLRSYFTEQDPARIRTLEALGAPRAFSLEGRGAARA 738

Query: 750 DINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVI----- 793
                  ++PS  +   +                  ++      G +IH +L+ I     
Sbjct: 739 LFGTRMRISPSRAELYYECPFSYFCRVGLRLRPRRRAEFNPIESGSLIHLVLEKIVKKYG 798

Query: 794 --------FTLPEHKRKNFITSYCTKNAKLWPAK------EYKNLLLSITRLLENPMMTT 839
                     L   +    I +        +          ++ L+ +I RL+    +  
Sbjct: 799 GRGLAQLNGELLRSEITAIIDADLKARIANYDEMPARFKYLFRRLVGTIQRLI--ERLAL 856

Query: 840 AMSCDSYSEVSVSGKI------------NCPKKDIIISGRIDQISI---SQQNIF-IFEY 883
                ++   +    I                  +I+ G +D++ +     +    + +Y
Sbjct: 857 EFGQSAFEPAAFELPIGLDAPVQPLDLRAPDGTRVIVEGIVDRVDVLEQDGKKYVRVVDY 916

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIY 907
           K+       +  I Y    Q+ IY
Sbjct: 917 KSGAKTF-SLSDICYGLNMQMLIY 939


>gi|288929746|ref|ZP_06423589.1| DNA helicase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328847|gb|EFC67435.1| DNA helicase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 558

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 99/285 (34%), Gaps = 39/285 (13%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             + F+D++  ++ LL +      I   I     +I +DE QDT     +++  L     
Sbjct: 190 GYMSFDDILYFSHILLSRYP---NIYTLIKARYPYIFVDEFQDTIPFVIDLLAKL----- 241

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                 +    +  VGD+ QSIY F GA  ++                 +    E+  + 
Sbjct: 242 -----GNEGVIVGVVGDKAQSIYDFLGATVQQFDSF----------TVPEMQEYEIRGNR 286

Query: 265 RSTADILTVVDKV---FSI--PENAQGLSEDSTTTIRHRSSRI--GQVGTVQLWEQVVSQ 317
           RST  I+ +++ V   FS      ++G+  +          +    + GT ++       
Sbjct: 287 RSTKQIIDLLNIVRTDFSQDWLNGSEGMMPELLVGDMLNCYQQCIEKSGTDEIQSLAFQN 346

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
             +    ++       + L  +  ++   +++   I  +I           R      + 
Sbjct: 347 ILANSMRKKNGVREVENILGMDFDSNAERQKV---IKALIKAVEYTRMNDLRNA-WHQLD 402

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
           ++ R R  T ++    R+L +        +   +   +  + DL 
Sbjct: 403 IIDRDRTQTIVV---LRYLLD--GYKDYKDGSLMDFYNFLVNDLH 442


>gi|330985349|gb|EGH83452.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 813

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 95/334 (28%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +  ++ + ++H++IDE QD S      IR+   +         + R     +
Sbjct: 504 TSPENLKHVSDQMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSS 563

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   R             + + L  +FRS   I+   +
Sbjct: 564 LLCVGDDWQSIYGWRGSSPKYFMEFAREFS------SPATTRVMLSDNFRSHQHIIDAAE 617

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G              R   +    L   V+ + + +   +     +  DS
Sbjct: 618 HIVRAAPAIAGKKA-----------RASGMPQELLPVTVLDRDEDELAERVAEHYNDGDS 666

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +           R +  +  +I  D       +R+             K           
Sbjct: 667 ILLLYRKGSEKSRFSERLQALIDADAAMGAQGRRIRTLT-----YHSSKGLQADAVFLLG 721

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 722 DCQHLTVSPYKNQVYRLAGLGDASDL--------QPFDTAQKDEVLRLAYVAITRAARHC 773

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                  T          A+  I++ +   + + 
Sbjct: 774 YWYIDQGTGGGESAQMPKASDRIAQDKPFFEDLR 807



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 88/306 (28%), Gaps = 37/306 (12%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   L    + +        DD   I   R  +  
Sbjct: 524 MIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 583

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +    +FA    S     +                +       A  G++   S    E+
Sbjct: 584 YF---MEFAREFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIAGKKARASGMPQEL 640

Query: 526 ------IDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSANHN 570
                     DE       +  +  S L               L+        A  A   
Sbjct: 641 LPVTVLDRDEDELAERVAEHYNDGDSILLLYRKGSEKSRFSERLQAL-IDADAAMGAQGR 699

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +R +T H++KGL++  VFL+     +    +  +++ +  L D                
Sbjct: 700 RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGD---------------- 743

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
             +  ++    + ++E  RL YV +TRA+          T   + +      D +     
Sbjct: 744 --ASDLQPFDTAQKDEVLRLAYVAITRAARHCYWYIDQGTGGGESAQMPKASDRIAQDKP 801

Query: 691 NDERVK 696
             E ++
Sbjct: 802 FFEDLR 807


>gi|298487234|ref|ZP_07005283.1| UvrD/REP helicase family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158258|gb|EFH99329.1| UvrD/REP helicase family protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 830

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 95/334 (28%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +  ++ + ++H++IDE QD S      IR+   +         + R     +
Sbjct: 521 TSPENLKHVSDQMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   R             + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFAREFS------SPATTRVMLSDNFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G              R   +    L   V+ + + +   +     +  DS
Sbjct: 635 HIVRAAPAIAGKKA-----------RASGMPQELLPVTVLDRDEDELAERVAEHYNDGDS 683

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +           R +  +  +I  D       +R+             K           
Sbjct: 684 ILLLYRKGSEKSRFSERLQALIDADAAMGAQGRRIRTLT-----YHSSKGLQADAVFLLG 738

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 739 DCQHLTVSPYKNQVYRLAGLGDASDL--------QPFDTAQKDEVLRLAYVAITRAARHC 790

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                  T          A+  I++ +   + + 
Sbjct: 791 YWYIDQGTGGGESAQMPKASDRIAQDKPFFEDLR 824



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 88/306 (28%), Gaps = 37/306 (12%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   L    + +        DD   I   R  +  
Sbjct: 541 MIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 600

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +    +FA    S     +                +       A  G++   S    E+
Sbjct: 601 YF---MEFAREFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIAGKKARASGMPQEL 657

Query: 526 ------IDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSANHN 570
                     DE       +  +  S L               L+        A  A   
Sbjct: 658 LPVTVLDRDEDELAERVAEHYNDGDSILLLYRKGSEKSRFSERLQAL-IDADAAMGAQGR 716

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +R +T H++KGL++  VFL+     +    +  +++ +  L D                
Sbjct: 717 RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGD---------------- 760

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
             +  ++    + ++E  RL YV +TRA+          T   + +      D +     
Sbjct: 761 --ASDLQPFDTAQKDEVLRLAYVAITRAARHCYWYIDQGTGGGESAQMPKASDRIAQDKP 818

Query: 691 NDERVK 696
             E ++
Sbjct: 819 FFEDLR 824


>gi|226358111|ref|YP_002787850.1| ATP-dependent nuclease, subunit B (AddB); UvrD-like DNA helicase
           C-terminal domain protein [Deinococcus deserti VCD115]
 gi|226319754|gb|ACO47748.1| putative ATP-dependent nuclease, subunit B (AddB); putative
           UvrD-like DNA helicase C-terminal domain protein
           [Deinococcus deserti VCD115]
          Length = 897

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 68/630 (10%), Positives = 156/630 (24%), Gaps = 77/630 (12%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           + + S  +        S         +        R     + + +             +
Sbjct: 228 KAIRSGDEVVAAYVHRSAAERAFRNEEFPDIESEVRSCLRQVRSWLDDG----------V 277

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +A  + V+VR              +  +Y + +V   +  L        L A       +
Sbjct: 278 RADHLAVIVR---HEATYLAALADVAREYAVPLVSGGQLPLLHTPLGSLLQAWIDAHARE 334

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT-QRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
               +   +L  PL   S D + +    Q      +  +        + +    ++ +  
Sbjct: 335 WRYSATRRVLTHPLLRLSVDALARARALQPGCPSGLGVWNADLDWLDVPEDTTWLEGLGV 394

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           L  +       D                 R   E                +    S ++L
Sbjct: 395 LQRLLVDLGVRDQCQHDPALNVAVSLLGDRLSAEAR--------------RTDACSREQL 440

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           +  +     T           VR+     A G     V+++     +F  +         
Sbjct: 441 LGLVRHVLQTTTMPVLLGRGGVRVANPLAALGRRFDHVWVLGVSDTLFPARSA------D 494

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
               D        +S      VS L    +         L    +  A  +L+I +    
Sbjct: 495 HPLIDSATRRRWSRSGVHVPDVSALASVEEA--------LFLGAVAGAGHELVISRPRRG 546

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            + ++     ++  +            + L + + +   +A    T         + E  
Sbjct: 547 PDGRELRPSPFWSRLG---EGKAEAAPLALGSEMERLLTLALAGQTLPGSIQGKVQVERE 603

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD-------------N 777
           +          +L SPI+ +       +PS +   G                        
Sbjct: 604 RDAGHFGPHSGQLDSPIRVEE---RRWSPSQLHAAGACRYRWFTQKLLRLDEPLDPDLVE 660

Query: 778 QTFNRGLIIHKLL-----QVIFTLPEHKRKNFITSYCTK-----------NAKLWPAKEY 821
                G ++H  L               R         +                   + 
Sbjct: 661 DRRVTGTLLHAALEAALQDRAAGDTTEDRVRRAEEALKRKERQLWASGELRGGPLWPVDR 720

Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881
           + +  +  R + +P          + E      +        + G +D++  +   + + 
Sbjct: 721 EEIRRTAVRAVRSPAFVPPGWVPVHLEERREFTVRAGDATFALVGIVDRLDQTPDGLTVT 780

Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           +YKT  +V + +         QL +Y + L
Sbjct: 781 DYKTGSYVSKVVFEGVMNLEVQLPLYMEAL 810


>gi|289624157|ref|ZP_06457111.1| UvrD/REP helicase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 952

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 29/194 (14%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  +     +     T++              +   +  A K    LDFED+++   + +
Sbjct: 549 EDLRARVGGLSSGLFTHRYNMFLDILW----PVMDAWNVALKGAGGLDFEDMLVQAAEHV 604

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +        + +   +   ++ DE QD S  +  + R+L  D           R  FAVG
Sbjct: 605 E--------QGRCKPKFRLVMADEFQDASRARARLCRALVGD---------PGRHFFAVG 647

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSI  F G++   +   KR              +++L  +FR   D+  V  +  S 
Sbjct: 648 DDWQSINRFAGSDVSMMTDFKRFF--------GSGQLLKLQQTFRCPQDLCDVSSRFVSK 699

Query: 281 PENAQGLSEDSTTT 294
                  +  S T 
Sbjct: 700 NPVQLTKTVVSATP 713



 Score = 41.1 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            ++VH +KG E+  V L    S                           P + + + ++S
Sbjct: 789 FLSVHRSKGTEADYVILPAMVSMKRGRSF--------------------PSTMTDDPVLS 828

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
            ++         E  RL YV +TRA   +++      
Sbjct: 829 LVMPAGDSYLFAEERRLFYVALTRARRTVVMYTVDKQ 865


>gi|293192899|ref|ZP_06609743.1| RecB family exonuclease [Actinomyces odontolyticus F0309]
 gi|292819955|gb|EFF78954.1| RecB family exonuclease [Actinomyces odontolyticus F0309]
          Length = 294

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 67/224 (29%), Gaps = 29/224 (12%)

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLL--------SDNQTFNRGLIIHKLLQVIF 794
           L +P   +      L+ S      +  L+  L         + +    G I+H +L+ +F
Sbjct: 14  LITPSTAERTWEPALSASRAKEYERCPLQYRLHVLDGYREPETRAKALGTIVHAVLEKLF 73

Query: 795 TLPEHKR-------------KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            LP  +R             +   +      A      +    L     +++        
Sbjct: 74  ALPAQQRTPEAARGQVWPQYEALASKNPEVPALFSDDADRDAWLDEARAVVD--GYFAIE 131

Query: 842 SCDSYSEVSVSGKI-NCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYT 899
                +  ++  ++       + + G ID++  +    + + +YKT              
Sbjct: 132 QPQWIAPAALEQRVTTTTSGGVRLLGFIDRVDRAPDGRLRVVDYKTGKAPGP---RYVDE 188

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            + QL  Y  +L            L+Y+   +V        + A
Sbjct: 189 ALYQLRFYALLLAR-TQVLPSRMQLVYLKAGQVITFDPEAGDIA 231


>gi|320324037|gb|EFW80120.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|330880653|gb|EGH14802.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 830

 Score = 87.7 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 95/334 (28%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +  ++ + ++H++IDE QD S      IR+   +         + R     +
Sbjct: 521 TSPENLKHVSDQMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   R             + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFAREFS------SPATTRVMLSDNFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G              R   +    L   V+ + + +   +     +  DS
Sbjct: 635 HIVRAAPAIAGKKA-----------RASGMPQELLPVTVLDRDEDELAERVAEHYNDGDS 683

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +           R +  +  +I  D       +R+             K           
Sbjct: 684 ILLLYRKGSEKSRFSERLQALIDADAAMGAQGRRIRTLT-----YHSSKGLQADAVFLLG 738

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 739 DCQHLTVSPYKNQVYRLAGLGDASDL--------QPFDTAQKDEVLRLAYVAITRAARHC 790

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                  T          A+  I++ +   + + 
Sbjct: 791 YWYIDQGTGGGENAQMPKASDRIAQDKPFFEDLR 824



 Score = 40.7 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 88/306 (28%), Gaps = 37/306 (12%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   L    + +        DD   I   R  +  
Sbjct: 541 MIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 600

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +    +FA    S     +                +       A  G++   S    E+
Sbjct: 601 YF---MEFAREFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIAGKKARASGMPQEL 657

Query: 526 ------IDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSANHN 570
                     DE       +  +  S L               L+        A  A   
Sbjct: 658 LPVTVLDRDEDELAERVAEHYNDGDSILLLYRKGSEKSRFSERLQAL-IDADAAMGAQGR 716

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +R +T H++KGL++  VFL+     +    +  +++ +  L D                
Sbjct: 717 RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGD---------------- 760

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
             +  ++    + ++E  RL YV +TRA+          T   + +      D +     
Sbjct: 761 --ASDLQPFDTAQKDEVLRLAYVAITRAARHCYWYIDQGTGGGENAQMPKASDRIAQDKP 818

Query: 691 NDERVK 696
             E ++
Sbjct: 819 FFEDLR 824


>gi|20806784|ref|NP_621955.1| ATP-dependent nuclease [Thermoanaerobacter tengcongensis MB4]
 gi|81482923|sp|Q8RCZ1|ADDB_THETN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|20515246|gb|AAM23559.1| ATP-dependent nuclease [Thermoanaerobacter tengcongensis MB4]
          Length = 1159

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 91/776 (11%), Positives = 227/776 (29%), Gaps = 156/776 (20%)

Query: 302  IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP--QESSASILARRIAYTISNMIGT 359
             G     +  +++     +  +   E +     ++   + ++       +A  I+ +I  
Sbjct: 272  KGIPKRFEHNKELAFLEKNFFSHPYEIYNEETKNISIFKATNMYSEVEEVARDIARLIRD 331

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
            + +         +  DI+V     KD      L + + + Y I    + +  +T++  I 
Sbjct: 332  EHM---------RYSDIVV---ATKDLKRYYKLVKAIFSHYGIPHFIDLKINITNNPIIV 379

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-----------------CTQRHE 462
             ++++    L      S    LK+      +++I  +                    R +
Sbjct: 380  YVISIFEIYLKNWSYESVFRYLKTGFTGIDKEEINLLENYVLANGIKGNKWKERWEYRID 439

Query: 463  TETVYEYIQKFANCGISKFQHVIKY---------------------IHELIHIAQFCSPH 501
             +T    +++     I+K   V +                         L          
Sbjct: 440  YKTDSLLMEEREKQIINKVNEVRERVYLPLEKFYTRFSHSKNVKEACEVLYDFLVENKLP 499

Query: 502  DFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            +     +   K R +F  +    ++ D++ + L+  +        SL++    +      
Sbjct: 500  EKIEKFIEEFKNRGEFDTANQYAQIWDIVVDVLDQMVEVLGEEKISLEQFARLISIGFDE 559

Query: 561  IKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             + A      +EV + +V   K   S V++L+     VF     ++        +     
Sbjct: 560  YQIASIPPALDEVLVTSVDRMKSHNSKVLYLLGANDGVFPASSFEEGIFSDEERNLLSSL 619

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                   ++  +              E   L+Y  +T AS+ L I         +     
Sbjct: 620  DLELDRDTKAKVF-------------EEQFLVYTALTSASEFLKISYPIADHEGRSLRPS 666

Query: 680  TWYDMVYDSFH-------------NDERVKKIKLTNSI----------------NKDEWI 710
                 +   F              ++E + ++ +                        W+
Sbjct: 667  IIISRLRRIFPKIKVSTNIVEMDTDEENLNRVTVPLPTFNEMIKSFKKWNITGKIHPIWL 726

Query: 711  AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                     +    + E+T++  + + +I +     IK    E    + S ++       
Sbjct: 727  EVYKWYRTKDEWKKKLEDTLEGFVYDNQIKRIPPLKIKKLYGEEMEFSVSRLEKYAACPF 786

Query: 771  ESLLS-DNQTFNR----------GLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLW 816
               +    +   R          G+ +H +L  I       E   +     +C     + 
Sbjct: 787  AYFVQYGLKAKERKIYGFEPPDLGIFMHNVLNEIAKALEKEELTWQEIDKEWCNDAVDII 846

Query: 817  PAKEYKN--------------LLLSITRLLENPMMTTAMSCDSYS--------EVSV--- 851
              +                  L   + R+L   +    +S             EV+    
Sbjct: 847  VEEMVDKIPGYILKSSSRYRYLANRLKRVLSKAV--WIISEHMKRSSFVPLGHEVAFGEN 904

Query: 852  -----SGKINCPKKDIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIA 902
                    +    ++I + GRID++ + ++     + I +YK+      ++  + Y    
Sbjct: 905  QKYPPIKIVLSNGEEIKLIGRIDRVDVLEKEGETYVRIIDYKSG-DKTLDLSDVLYGLEL 963

Query: 903  QLSIYEKI-LKDSYPNK----SLVCLLIYVS-EPKVFIIPQNKLNKAF-AEISTKI 951
            QL +Y    L+ ++  K         + Y   +  +    ++  ++    EI  ++
Sbjct: 964  QLLVYLDAILESAFEGKANLSP--AGIFYFKIDDPIVRADKDISDEELYKEIMKRL 1017


>gi|330891571|gb|EGH24232.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 340

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 95/334 (28%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +  ++ + ++H++IDE QD S      IR+   +         + R     +
Sbjct: 31  TSPENLKHVSDQMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSS 90

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   R             + + L  +FRS   I+   +
Sbjct: 91  LLCVGDDWQSIYGWRGSSPKYFMEFAREFS------SPATTRVMLSDNFRSHQHIIDAAE 144

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G              R   +    L   V+ + + +   +     +  DS
Sbjct: 145 HIVRAAPAIAGKKA-----------RASGMPQELLPVTVLDRDEDELAERVAEHYNDGDS 193

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +           R +  +  +I  D       +RV             K           
Sbjct: 194 ILLLYRKGSEKSRFSERLQALIDADAAMGAQGRRVRTLT-----YHSSKGLQADAVFLLG 248

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 249 DCQHLTVSPYKNQVYRLAGLGDASDL--------QPFDTAQKDEVLRLAYVAITRAARHC 300

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                  T          A+  I++ +   + + 
Sbjct: 301 YWYIDQGTGGGENAQMPKASDRIAQDKPFFEDLR 334



 Score = 41.8 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 47/306 (15%), Positives = 88/306 (28%), Gaps = 37/306 (12%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   L    + +        DD   I   R  +  
Sbjct: 51  MIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 110

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +    +FA    S     +                +       A  G++   S    E+
Sbjct: 111 YF---MEFAREFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIAGKKARASGMPQEL 167

Query: 526 ------IDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSANHN 570
                     DE       +  +  S L               L+        A  A   
Sbjct: 168 LPVTVLDRDEDELAERVAEHYNDGDSILLLYRKGSEKSRFSERLQAL-IDADAAMGAQGR 226

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            VR +T H++KGL++  VFL+     +    +  +++ +  L D                
Sbjct: 227 RVRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGD---------------- 270

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
             +  ++    + ++E  RL YV +TRA+          T   + +      D +     
Sbjct: 271 --ASDLQPFDTAQKDEVLRLAYVAITRAARHCYWYIDQGTGGGENAQMPKASDRIAQDKP 328

Query: 691 NDERVK 696
             E ++
Sbjct: 329 FFEDLR 334


>gi|3790598|gb|AAC68687.1| unknown [Rhodococcus erythropolis]
          Length = 323

 Score = 87.7 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 84/265 (31%), Gaps = 42/265 (15%)

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES-- 772
           S   P     +          E   P    +  +        L+PS      +  L    
Sbjct: 11  SPPAPTELSDQPHSLPGVSSVELPTPTPTGATSQERPRSRPALSPSRAGDYKQCPLLYRF 70

Query: 773 ------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR-KNFITSYCT-----------KNAK 814
                   +  +   RG ++H  L+ +F LP   R  +                  + A+
Sbjct: 71  RAVDRIPETPTRAQVRGTVVHAALEALFALPTGHRVPDRAAELVRPAWERVSAESPEAAE 130

Query: 815 LWPAKEYKNLLLSITRL------LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI 868
           L P  E    L  + +L      LE+P        ++  EV V  ++      + + G +
Sbjct: 131 LIPEDELDAFLGEVGKLVATYYTLEDPT---RFDAEA-CEVYVETELE---NGVRLRGFV 183

Query: 869 DQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           D+I ++    + + +YKT     +  E      + Q+  Y  +L  +         LIY+
Sbjct: 184 DRIDVAPTGEVRVVDYKTGKAPREFTESKA---LFQMKFYALVLLRTRGIVPAQLRLIYL 240

Query: 928 SEPKVF--IIPQNKL---NKAFAEI 947
               +       ++L    +  + I
Sbjct: 241 PSGSILTYAPDHDELIRFERTLSAI 265


>gi|307330766|ref|ZP_07609902.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
 gi|306883569|gb|EFN14619.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
          Length = 316

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 65/231 (28%), Gaps = 32/231 (13%)

Query: 748 KNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                    L+PS      +  L              +    RG ++H +L+ +F  P  
Sbjct: 33  PPKSGRAASLSPSRAADFMRCPLLYRFRVIDKLPEKPSAAATRGTVVHAVLERLFDAPAA 92

Query: 800 KRKNFITSYC---TKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-SCDSYSEVSVSGKI 855
           +R +           +  L    E   L            +   +    +  +   S + 
Sbjct: 93  ERTSPRARAMVPGEWDRLLAAKPELAELFQEEDGAPAPDRLAEWLTGAQALVDQWFSLED 152

Query: 856 NCPKK--------------DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900
               +               + + G ID+I I+   ++ I +YKT      +        
Sbjct: 153 PTRLEPAERELFVETELESGLRLRGIIDRIDIAPTGDVRIVDYKTGKAPAPQYAGEA--- 209

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           + Q+  Y  +L            L+Y+    V     +   +    +  K+
Sbjct: 210 LFQMKFYALVLWRLRGVIPRRLQLVYLGSGDVLTYDPD--ERELRAVERKV 258


>gi|167900179|ref|ZP_02487580.1| superfamily I DNA and RNA helicases [Burkholderia pseudomallei
           7894]
          Length = 447

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 65/564 (11%), Positives = 142/564 (25%), Gaps = 167/564 (29%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
           ++         F+ Y      L  + +A      YE+  ++   +D+  ++         
Sbjct: 2   ARSLVDDAESDFSDYADVLMELHLIRIA------YEKRIERAGGIDYPAMLRRAC----- 50

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 +   +     H+ +DE QD    Q +++  L +            R L   GD 
Sbjct: 51  -----SVIDSVALPYEHVFVDEAQDMDAAQMQLLVGLAK----------RVRNLMVFGDP 95

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q+++ F G +   +    R               + L  SFR T +   + + + S  +
Sbjct: 96  NQAVFGFIGGQASDLREVIRD-----------VVTLPLSRSFRLTHENAALANAILSNGK 144

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
           +    +    T                                         SL Q  S 
Sbjct: 145 DRTVGNRHGVTP----------------------------------------SLTQCGSV 164

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +   IS +       ++          I +L R +     +        ++   
Sbjct: 165 IEQEDEVVELISRLKEDGVPGNH----------IAILSRTKAPLRAVEQALLAAGHETN- 213

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                                           +    + +          + + C    +
Sbjct: 214 -------------------------------SMYSPRLHEYVDRALDMLSLIQACVATAK 242

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHE--LIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                + + +           V + + +  L  +A+      F    + A +   +    
Sbjct: 243 GGRRPQRLWRTRRLREIFGSDVREAVIDDCLRMLAKASRIPSFEGRYVMATRIYLRLARA 302

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
            G    ++  E   +  +     + +++     +                 V   ++H A
Sbjct: 303 SGGMPKNLASELGRW--QATSRRFRTVRAFREHVATLRMQEP---------VVASSIHGA 351

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KG E   V ++                                             + +K
Sbjct: 352 KGGEWDYVIVLGVTDGSIP-----------------------------------FYREIK 376

Query: 641 KSTQEEYNRLLYVGMTRASDQLII 664
           +   EE  RL YV +TRA  QL +
Sbjct: 377 RGEIEEERRLFYVAVTRACKQLHL 400


>gi|330869936|gb|EGH04645.1| UvrD/REP helicase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 914

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 29/194 (14%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +  +     +     T++              +   +  A K    LDFED+++   + +
Sbjct: 517 EDLRARVGGLSSGLFTHRYNMFLDILW----PVMDAWNVALKGAGGLDFEDMLVQAAEHV 572

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +        + +   +   ++ DE QD S  +  + R+L  D           R  FAVG
Sbjct: 573 E--------QGRCKPKFRLVMADEFQDASRARARLCRALVGD---------PGRHFFAVG 615

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSI  F G++   +   KR              +++L  +FR   D+  V  +  S 
Sbjct: 616 DDWQSINRFAGSDVSMMTDFKRFF--------GSGQLLKLQQTFRCPQDLCDVSSRFVSK 667

Query: 281 PENAQGLSEDSTTT 294
                  +  S T 
Sbjct: 668 NPVQLTKTVVSATP 681



 Score = 41.1 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            ++VH +KG E+  V L    S                           P + + + ++S
Sbjct: 757 FLSVHRSKGTEADYVILPAMVSMKRGRSF--------------------PSTMTDDPVLS 796

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
            ++         E  RL YV +TRA   +++      
Sbjct: 797 LVMPAGDSYLFAEERRLFYVALTRARRTVVMYTVDKQ 833


>gi|282864346|ref|ZP_06273402.1| RecB family exonuclease-like protein [Streptomyces sp. ACTE]
 gi|282560833|gb|EFB66379.1| RecB family exonuclease-like protein [Streptomyces sp. ACTE]
          Length = 281

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 56/195 (28%), Gaps = 21/195 (10%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
               ++   RG ++H +L+ +F  P  +R                 +    L        
Sbjct: 16  PEKPSEAATRGTLVHAVLERLFDAPAAERTAPRAKALIPGQWDRLLESKPELTELFAGDP 75

Query: 833 ENPMMT-TAMSCDSYSEVSVSGKINCPKK--------------DIIISGRIDQISISQ-Q 876
           E   +       +   E   S +     +               + + G ID++ ++   
Sbjct: 76  EGERLAGWLGEAERLVERWFSLEDPTRLEPAEREMFVETELDSGLRLRGVIDRVDVAPTG 135

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            + I +YKT               + Q+  Y  ++            L+Y+    V  + 
Sbjct: 136 EVRIVDYKTGKAPRP---EYAEGALFQMKFYALVIMRLRKVVPRRLQLVYLGSGDV--LT 190

Query: 937 QNKLNKAFAEISTKI 951
            + +      +  K+
Sbjct: 191 YDPVPADLERVERKL 205


>gi|297543795|ref|YP_003676097.1| ATP-dependent nuclease subunit B [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841570|gb|ADH60086.1| ATP-dependent nuclease subunit B [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1153

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 76/753 (10%), Positives = 193/753 (25%), Gaps = 151/753 (20%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           ++      +     D       R     ++  ++               +  S     + 
Sbjct: 257 EICQRNNISYEKPVDLNGGTPKRFRESEELSFLEKHFFSYPYKVYPSETKDISLFKAVNV 316

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             +       AR I   + +             + ++  +I+V  R   D      L + 
Sbjct: 317 YSEVEET---ARDIIRLVRD-------------KGLRYSEIVVAAR---DLNRYHKLVKA 357

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
           + + Y I    + +  + ++  I  + +L    L +    S    LK+   N   +DI  
Sbjct: 358 IFSQYGIPYFIDLKIEIKNNPIIVFITSLFDIHLKRWSYESVFRYLKTGFANLEIEDISL 417

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQ--------------------------------- 482
           I           +  ++ A      ++                                 
Sbjct: 418 IENYVLANGIKGDKWKEEAWNYRLDYRFDRLTMEEEEKEIIEKVNEIKEKITIPLQGFYK 477

Query: 483 ------HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
                 +V +    L               ++   K  +++  +    +V D++ + L+ 
Sbjct: 478 KFSKSKNVREACGTLYDFLVEMGLPQKIQKLIEKFKEEKEYDTANQYAQVWDIVVDVLDQ 537

Query: 536 TLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +        ++++    L                +EV + +V   K   +  ++++   
Sbjct: 538 LVEVIGGEKVTVEQFAKILSIGFDEYQIGTIPPALDEVLVTSVDRMKSHNAKALYIIGVN 597

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             +F   H  +  +     +          + ++  +              E   L+Y  
Sbjct: 598 DGIFPASHFDERILTDEDREILTSHDVELDNDTKTKVF-------------EEQFLVYTA 644

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK-------- 706
           +T  S  L I         K          +   F   ++   +   ++  +        
Sbjct: 645 LTSTSKFLRISYPIADHEGKSMRPSIIISRLKKIFPKIKQFNNVVEMDTAEENLNRVSTP 704

Query: 707 -DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK--------------------LFS 745
              +     +    + T       +       K  +                        
Sbjct: 705 SPTFNEMITAIKKWDVTDKIHPLWLDVYKWYAKNDRWKPGLTRALEGIYYTNQVEKVPAH 764

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLS-DNQTFNR----------GLIIHKLLQVIF 794
            +K    +    + S ++          +    +   R          G+ +H +L    
Sbjct: 765 KMKKLYGDKLRFSVSRLEKYAACPFAYFVQYGLKARERKIYSFEPPDLGIFMHNILDRFS 824

Query: 795 TLPEHK---RKNFITSYCTKNAKLWPAKEYKNLLLSITR------LLENPMMTTAMSCDS 845
              E +    +     +C +   +      + +   I         L    +   +S   
Sbjct: 825 KALEEEELTWQEVDKEWCDEAVSIIVDDMIQKIPGYILNSSPRYKFLA-ERLKRILSNAV 883

Query: 846 Y---------------SEVSV-----SGKINCP---KKDIIISGRIDQI--SISQQNIFI 880
           +                EV+         I       ++I + GRID+I     +   +I
Sbjct: 884 WIVSEHIKRSSFKPVDHEVAFGDNQKYPPIKIGLSNGEEINLIGRIDRIDIFKKEDEAYI 943

Query: 881 --FEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
              +YK+  +   ++  + Y    QL IY   +
Sbjct: 944 RIIDYKSG-NKTLDLSDVFYGLELQLLIYLDAI 975


>gi|227810115|ref|ZP_03989028.1| predicted protein [Acidaminococcus sp. D21]
 gi|226904695|gb|EEH90613.1| predicted protein [Acidaminococcus sp. D21]
          Length = 1037

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 87/724 (12%), Positives = 184/724 (25%), Gaps = 108/724 (14%)

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI------GQVGTVQLWEQVVSQHDSQCNP 324
           + +V  +      + GL  D +      ++R       G      +  + VS+ +     
Sbjct: 234 MALVKALGKRVSISFGLFYDESRPDLSEATRKLEEDLLGDGYEKIIAPKKVSRPEDLAYF 293

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
            +    +  D++  +      A  +   I  ++   T      K  +   +IL+LVR   
Sbjct: 294 AETFPKATGDAVAAQHIYLGEASSVDSEIKMVL---TDVKKKLKSGVAPHEILLLVRNLN 350

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
           D   +          Y +     D   L        L  L    L+++D +  + ++K+ 
Sbjct: 351 DYQGLGRYMEE----YGLLSTLADVTDLAGQPLPLFLTKLWEAALTKDDTMPLLALMKTT 406

Query: 445 LFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
           L       D   +     E+              +S    +      L          D+
Sbjct: 407 LMQELFHVDRIAVGHLVEESYIETPGFLLERISHLSGVSDLKPLFEALQTPKTCTQWRDY 466

Query: 504 FTLILGAKKGRQQFISRFGN------------EVIDVLDEFLNFTLR-NEQNSYSSL--- 547
               L      + F                  +  D +  F +      E      L   
Sbjct: 467 LDERLTEWDLVRTFGRLHQEGKVTLSEVKIMAQSEDFVRAFFDRLEALFEAVGSKDLSVG 526

Query: 548 --QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
                    E    T      ++   +R+M     +G+  P V+++     +F     + 
Sbjct: 527 LGDIFSYWKEALIGTTITLTPSHEEGIRVMEASDIQGVPYPYVYILGVRDGLFPAISRES 586

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                    +         +                             ++ A  ++ + 
Sbjct: 587 WLYSDEERTELAALDIPLGTS--------------ARRLARDRFFFASAVSLAEKEVHLS 632

Query: 666 KHSNTSNEKK-----------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
             ++                  +   +     D        + ++              +
Sbjct: 633 WFADDEGGASYYIERLRHFFTPHALPFVTYHSDVHDCYSEPQMVRYLMEAENLGEKEATY 692

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL---- 770
              H +   L R +  K     + +      P      E   L+ S +D           
Sbjct: 693 LADHVDAKILLRAQDEKNRFAPKSLYNGYLGP----QEETLHLSASQLDGFLTCPFMYLF 748

Query: 771 ---------ESLLSDNQTFNRGLIIHKLL---------QVIFTLPEH-KRKNFITSYCTK 811
                    E+  +       G +IH  L         + +FT       +    +Y   
Sbjct: 749 THVWKLDVKEAKTAFPTPDVVGNLIHLTLSRFMGRHLGEALFTKELEMLWQELSEAYQAA 808

Query: 812 N----------AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS--------- 852
                         +     K+    + R L   +     S    +  +V          
Sbjct: 809 YTEMERNGDIPRSRYSDHIRKSYEEWLKRWLRMEVDYEEKSPTGVTVCAVEKAFGRKGAA 868

Query: 853 ---GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                +    K + +SG+ID+I  S+    I +YKT          +      QL +Y K
Sbjct: 869 WPPYDLTVDGKKVYLSGQIDRIDRSESGYLIMDYKTGGRP--TTARMDEGKAVQLPLYIK 926

Query: 910 ILKD 913
           +L+ 
Sbjct: 927 VLER 930


>gi|229002237|dbj|BAH57703.1| hypothetical protein [Staphylococcus aureus]
 gi|238768523|dbj|BAH66835.1| DNA helicase [Staphylococcus aureus]
          Length = 591

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 23/135 (17%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  ++D +D++  +  L++      +I   +  +  +  IDE QDTS +Q  +I  +   
Sbjct: 218 EKGIIDHDDVLFFSYVLIRDYP---FILTILCAKYPYFFIDEFQDTSQLQDFIIDKI--- 271

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +  +GD+ Q+IYSF GA      + K       T             
Sbjct: 272 -------RQKGCIVGVIGDKAQAIYSFQGARVSLFEKFKVDLINSHTIL----------E 314

Query: 263 SFRSTADILTVVDKV 277
           + RS+  I+T ++ +
Sbjct: 315 NHRSSYQIVTFLNSI 329


>gi|309807502|ref|ZP_07701461.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
 gi|308169252|gb|EFO71311.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
          Length = 96

 Score = 87.3 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 855 INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----HIPYTHIAQLSIYEKI 910
            N     I++ G ID   I    I +F+YKT       +E    ++   +  QLS+Y   
Sbjct: 11  FNDVNDKILVHGTIDGYFIDDDGIILFDYKTDFVDRSNLELAINNLKKKYAGQLSLYASA 70

Query: 911 LKDSYPNKSLVC-LLIYVSEPKVFIIP 936
           L +   +K +    LI +S  K+  + 
Sbjct: 71  LNNL-SDKKVKAKYLILLSINKIVKVD 96


>gi|85708410|ref|ZP_01039476.1| helicase [Erythrobacter sp. NAP1]
 gi|85689944|gb|EAQ29947.1| helicase [Erythrobacter sp. NAP1]
          Length = 1012

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/448 (10%), Positives = 120/448 (26%), Gaps = 49/448 (10%)

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
             +   +    + + ++  + +L          D              + +  G  +  +
Sbjct: 490 AREAGVSEWFEEVEEILSPLVDLPETITLAQSLDMLASSAERLAAEAVWAAEDGRALSRL 549

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           L++              S    I   ++      R     H  V I+ +  ++   + +V
Sbjct: 550 LEDLRLHAREIATTVSPSDIASILR-DRMDEVAVRPPYGGHPRVAILGLLESRMARADLV 608

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                    +         + P +    G+P    +     + ++  +   +        
Sbjct: 609 ICGGLNEGSWPQAPGSDALLAPGVLRALGVPGAEFRIGLAAHDLAGAMGAPE-------- 660

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
               V ++R+              E  +    +   V           + K T ++    
Sbjct: 661 ----VVLSRSQR----------DAEGPTLPSRFVLRVEALLGELAGRHREKRTPAMLPLL 706

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
               E +  +P   P    +  K  +    + + L  P +    E   L         + 
Sbjct: 707 DREPEPAPAYPRPQPTPTADQRKVRISATALDRLLGDPYQFYAQEILGLR--------RL 758

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK---------NAKLWPAK 819
           +  +         RG ++H +L       E      I  +  +           K     
Sbjct: 759 DPLAADPFGDPALRGTLVHDILDAWHKAREAHPTLEIAPFAERMFAEAKVHPLFKGLWQP 818

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNI 878
                +    + +++       + D  + +    +       I +SGR D+I       +
Sbjct: 819 RLVAAMERFEQWVDDA------AKDGRTVLVTETRGEMSVDGIPVSGRADRIDRLGDGRL 872

Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            + +YKT    P     +   +  Q+ I
Sbjct: 873 VVVDYKTG--GPASASQVEAGYALQMGI 898


>gi|302536762|ref|ZP_07289104.1| ATP-dependent DNA helicase [Streptomyces sp. C]
 gi|302445657|gb|EFL17473.1| ATP-dependent DNA helicase [Streptomyces sp. C]
          Length = 233

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 58/230 (25%), Gaps = 17/230 (7%)

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
             + +    +L   +   + +  P     ++   L                        +
Sbjct: 5   DRDLDALEGELRRARAAVRDVELPSALSASQLLRLAADEQAFVRDLARPMPKPPQPAARQ 64

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
           G   H  ++  F        + +    T           +  L ++    E         
Sbjct: 65  GTRFHAWVESRFDELPLPLLDDLLDPATDLPGSDQEVADEADLAALKAAFERSEYAE--- 121

Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHI 901
               +   +   +       +I GRID +  +      + ++KT      +         
Sbjct: 122 ---RTPHRMEAPVQLTLAGRVIRGRIDAVYRNPDGSYEVVDWKTGRTTQADP-------- 170

Query: 902 AQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
            QL++Y     ++   P   +    ++V   +V         +    I  
Sbjct: 171 LQLAVYRLAWAEATGTPLDRVTAAFLHVRSGRVIRPRDLPGRERLERILQ 220


>gi|289751890|ref|ZP_06511268.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92]
 gi|289692477|gb|EFD59906.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92]
          Length = 324

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 93/332 (28%), Gaps = 48/332 (14%)

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
           ++   +A   +V +++ H A G E  +V +      ++ +   +   +      D    +
Sbjct: 6   VRPEPAAPTEQVMVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGV 65

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----S 676
               S              +     E  RLL   M RA  +L++    + +         
Sbjct: 66  TKDASM-------------RAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVL 112

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNS--------------INKDEWIAYEWSTHHPENT 722
               ++++   +  + E V    ++                +      A + +      T
Sbjct: 113 PSAFFFEIAQWADGDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDDADRDCAAT 172

Query: 723 PLEREETI----KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            L R            +   +     S    D ++   L PST+       L  L   + 
Sbjct: 173 QLARLAKAGVPGADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHG 232

Query: 779 TF-------NRGLIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSIT 829
                      G ++H L                  +      A+ + A E       I 
Sbjct: 233 GTNTRELPSAVGSVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQ 292

Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
             ++      A S    +EV V   I+   +D
Sbjct: 293 AFVQ----WRAQSRSELTEVGVGVDIDGALED 320


>gi|257487782|ref|ZP_05641823.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 301

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 72/214 (33%), Gaps = 22/214 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +  ++ + ++H++IDE QD S      IR+   +         + R     +
Sbjct: 96  TSPENLKHVSDQMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSS 155

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   R             + + L  +FRS   I+   +
Sbjct: 156 LLCVGDDWQSIYGWRGSSPKYFMEFAREFS------SPATTRVMLSDNFRSHQHIIDAAE 209

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G              R   +    L   V+ + + +   +     +  DS
Sbjct: 210 HIVRAAPAIAGKKA-----------RASGMPQELLPVTVLDRDEDELAERVAEHYNDGDS 258

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +           R +  +  +I  D       +R
Sbjct: 259 ILLLYRKGSEKSRFSERLQTLIDADAAMGAQGRR 292


>gi|302561541|ref|ZP_07313883.1| RecB family exonuclease [Streptomyces griseoflavus Tu4000]
 gi|302479159|gb|EFL42252.1| RecB family exonuclease [Streptomyces griseoflavus Tu4000]
          Length = 277

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 66/219 (30%), Gaps = 29/219 (13%)

Query: 757 LNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
           ++PS      +  L              ++   RG ++H +L+ +F  P  +R       
Sbjct: 1   MSPSRASDFMQCPLLYRFRVIDRLPEKPSEAATRGTLVHAVLERLFDAPAAERTAPRAKS 60

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-CDSYSEVSVSGKINCPKK------- 860
                     +    ++       E   +   ++  ++  E   + +     +       
Sbjct: 61  LVPGQWDRLRESRPEVVELFADDPEGERLARWLAEAEALVERWFTLEDPSRLEPAERELF 120

Query: 861 -------DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                   + + G ID++ ++    + I +YKT               + Q+  Y  ++ 
Sbjct: 121 VEAELDSGLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRP---EYAEGALFQMKFYALVVW 177

Query: 913 DSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                      L+Y+    V  +  + +      +  K+
Sbjct: 178 RLKNVVPRRLQLVYLGSGDV--LTYDPVLADLERVERKL 214


>gi|126179445|ref|YP_001047410.1| ATP-dependent nuclease subunit B-like protein [Methanoculleus
           marisnigri JR1]
 gi|125862239|gb|ABN57428.1| ATP-dependent nuclease subunit B-like protein [Methanoculleus
           marisnigri JR1]
          Length = 1049

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 76/699 (10%), Positives = 176/699 (25%), Gaps = 116/699 (16%)

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            L +        R IA  I +++             ++  +I V      D         
Sbjct: 285 RLAERRDREGEVRAIAQEIRDLVAAG----------VRPDEIAVAFP---DFASALPYVE 331

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            +  D+ +    +D   L+    ++ L+ +             V +  SP   F+     
Sbjct: 332 EVFPDFGVPYAASDGRALSASPLVRALLDVAMVPARGYRREDVVALATSPYLPFTGGCEL 391

Query: 455 KIC--TQRHETETVYEYIQKFANCGIS-------------KFQHVIKYIHELIHIAQFCS 499
            I     R       E +   A                  +    +  I       +   
Sbjct: 392 DIFSREARITAGNWDERLAALARAAGEERGRPDTPESAKSRLAEKVAAIESARKTVRELF 451

Query: 500 PH--------DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                          I   +   +++ +    E  D  D   +         +S +   +
Sbjct: 452 ADLSALEATKTLAGHIAAYRSVLERWQAPAMPEDGDP-DLLEDEARNL--GGFSGILAAL 508

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
             L +  P  K + +   + +  +   T  G       +   G +  +H  +  + +   
Sbjct: 509 ERLARLLPDEKMSLAEFSSLLAQVAAGTRTGRRRSNGGVRVVGVREVAHLAVPYLFV-GG 567

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           L +     +      + +     L    ++    E        +  A  ++ +   +   
Sbjct: 568 LVEGTMPRLTTRLPFTTDAETRRLGTRSREDILREERYYFTAALLSARTRVYLSYPAAEG 627

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP---LEREE 728
                +      +                +         A       P   P     RE 
Sbjct: 628 ATPLVHSGFVDAVREAFSPETWGSNDFPDSGLAAARRAGALLARGEFPVGMPCPIPVREA 687

Query: 729 TIKQLMDEQKIPKKLFSPI--------------KNDINEPYILNPSTIDTKGKTNL---- 770
             +  ++         SP                    E  + +P+ ++T          
Sbjct: 688 VRRLNIENYHRKAGYDSPYDGMLDDDPAILAALAERFGEGAVFSPTALETYADCPFRFYL 747

Query: 771 ---------ESLLSDNQTFNRGLIIHKLLQVI---------FTLPEHKRKNFITSYCTKN 812
                         D     RG ++H++               +      + +       
Sbjct: 748 ERVLGLAPLPEADPDLTAQERGSLVHRIAYRFYSGWTCDGNGPVTGACYADALRRILDAG 807

Query: 813 AKLWP---------AKEYKNLLLS-------ITRLLENPM--MTTAMSCDSYSEVSV--- 851
            +            A + ++LL S       + R L +      +     ++ EVS    
Sbjct: 808 REEADRFTFETPAWAADKEHLLGSPAAGKGVLERFLRHEAEVAASRFVPHAF-EVSFGLP 866

Query: 852 -------------SGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIP 897
                        +  I   ++ I + GR+D++  ++     I +YKT    P  +  I 
Sbjct: 867 LVPGEVDAVSIPDAVAIPLGEETIRLRGRVDRVDVLTDGRFMITDYKTGSSHP-RLRDIE 925

Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
                QL +Y + ++     + +      +   +V   P
Sbjct: 926 AGKALQLPLYLRAVETLTGREGVAGTYYILRRGEVTNKP 964


>gi|227873398|ref|ZP_03991655.1| UvrD Rep family helicase [Oribacterium sinus F0268]
 gi|227840759|gb|EEJ51132.1| UvrD Rep family helicase [Oribacterium sinus F0268]
          Length = 443

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 74/192 (38%), Gaps = 13/192 (6%)

Query: 93  SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
             D    +   ++ F K   R       +       + K +     E K       F  L
Sbjct: 105 FRDFCLYVIHVKEHFQKAWKREQYIGEVEKNACLQEIRKAVQKS-TELKSTESEYSFMPL 163

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
                 +LK+      +   + ++   I  DE+QD +  Q +++  L+ D    K     
Sbjct: 164 EEQCYRILKENP---KLLQILRRDFTKIYADELQDLNQTQLDILLLLSTD----KKGKMR 216

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
              LF VGD +Q+IY    AE +   + KR  +K+     +   ++ L  ++RS A+++ 
Sbjct: 217 HNCLFMVGDPRQTIYQEEEAERQVFFQMKRRMEKK-----RNVKVLYLNENYRSNAELVE 271

Query: 273 VVDKVFSIPENA 284
            +++ F     A
Sbjct: 272 WINRHFRKRMPA 283


>gi|330809864|ref|YP_004354326.1| putative UvrD/REP helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377972|gb|AEA69322.1| putative UvrD/REP helicase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 823

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 76/248 (30%), Gaps = 20/248 (8%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+    ++ +    +  +S      +  +  + +  +          ++    +      
Sbjct: 410 LESYEASKRVLASMAGDASAGPGFDYKVKGELGSAPLLDCFVAAAGFIENLGLDVPDAVG 469

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKK--RDVSAW 168
           R +  +                  +E+        V+ +         L  +   +    
Sbjct: 470 RMSFAQDDPD-RYFFEALSRYWRAFEDHLLDQSPPVMTYN----RMFALFSEHSPENFKL 524

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV-----GKNTHSSPRTLFAVGDEK 223
           +   + + ++H+++DE QD S      +R+   +             +   +L  VGD+ 
Sbjct: 525 LGEALLRPLSHLMVDEFQDVSPQIVSWLRASLREIRSRGPAMHVGRGAQRSSLLCVGDDW 584

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + G+ P   +   +             + + L  ++RS   I+   + +      
Sbjct: 585 QSIYGWRGSSPSYFMAFNKQFP------SPTTTRVMLTDNYRSHQHIIDAAEHIVRAAAA 638

Query: 284 AQGLSEDS 291
             G    +
Sbjct: 639 IPGKKAKA 646


>gi|295086862|emb|CBK68385.1| Superfamily I DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 546

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 22/159 (13%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D I  T  +L K      I   + +    ++IDE QDT+ +Q  +I  L++        
Sbjct: 210 ADAIYFTFRILDKYPS---ITQNLVRRFPILIIDEAQDTTELQMAIIDKLSQ-------- 258

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                ++  +GD  Q+I+ ++ A P   + +              +  ++L  + RS+  
Sbjct: 259 -YGAESIMLIGDPDQAIFEWNTASPHLFMEKYN---------NPDWHSLDLSENRRSSEK 308

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
           I  + ++ FS  E     S+   T        +    +V
Sbjct: 309 ICQLANR-FSGNEMCSIASDKDYTDEPCIKGHLDTPESV 346


>gi|253572840|ref|ZP_04850239.1| UvrD/REP helicase [Bacteroides sp. 1_1_6]
 gi|251837572|gb|EES65664.1| UvrD/REP helicase [Bacteroides sp. 1_1_6]
          Length = 593

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 22/159 (13%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D I  T  +L K      I   + +    ++IDE QDT+ +Q  +I  L++        
Sbjct: 210 ADAIYFTFRILDKYPS---ITQNLVRRFPILIIDEAQDTTELQMAIIDKLSQ-------- 258

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                ++  +GD  Q+I+ ++ A P   + +              +  ++L  + RS+  
Sbjct: 259 -YGAESIMLIGDPDQAIFEWNTASPHLFMEKYN---------NPDWHSLDLSENRRSSEK 308

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
           I  + ++ FS  E     S+   T        +    +V
Sbjct: 309 ICQLANR-FSGNEMCSIASDKDYTDEPCIKGHLDTPESV 346


>gi|152965821|ref|YP_001361605.1| RecB family exonuclease [Kineococcus radiotolerans SRS30216]
 gi|151360338|gb|ABS03341.1| putative RecB family exonuclease [Kineococcus radiotolerans
           SRS30216]
          Length = 294

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 65/226 (28%), Gaps = 36/226 (15%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
                     L+PS      +  L            + +    RG ++H +L+ ++ LP 
Sbjct: 5   AHPGDAPRRALSPSRAADFMQCPLLYRFRTIDRLPETPSAAAARGTLVHAVLERLYDLPA 64

Query: 799 HKRKNF---------ITSYCTKNAKL------------WPAKEYKNLLLSITRLLENPMM 837
            +R                  +  +L                     L     LL+    
Sbjct: 65  AERTAARAGAMVEPQWRELLEREPRLQALFGAQPKPGTPTGDALARWLAGARALLQ--KY 122

Query: 838 TTAMSCDSYSEVSVSGKINCPKKDI-IISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEH 895
                       +    +    +D  ++ G +D++ ++    + + +YKT     +  E 
Sbjct: 123 FALEDPTRLEPEAREMHVEVDLEDGPVLRGIVDRLDVTPAGRMRVVDYKTGRAPSETAEA 182

Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
                + Q+  Y  +L        L   L+Y+    V     ++ +
Sbjct: 183 RA---LFQMRFYALVLWRLRGEVPLSLQLVYLGSGDVLRHTPDEGD 225


>gi|331088207|ref|ZP_08337126.1| hypothetical protein HMPREF1025_00709 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330408451|gb|EGG87917.1| hypothetical protein HMPREF1025_00709 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 1131

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 87/696 (12%), Positives = 204/696 (29%), Gaps = 129/696 (18%)

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A+ +A +I  ++ T         +  + +DI V+     D  +   +       + I V
Sbjct: 321 EAKYVAESIRRLVRT---------KGYRYRDIAVIA---SDMNVYADVLEKACASFDIPV 368

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ----- 459
             + +  +  +  ++ + +L   I       S    L+S    F+ED+I ++        
Sbjct: 369 FMDHKKSILLNSFVEYVRSLLGMIQENFTYESVFRYLRSGYCEFTEDEIDRLENYCLALG 428

Query: 460 ----RHETETVYEYIQKFANCGISKFQH----VIKYIHELIHIAQ---------FCSPHD 502
               +   +      ++     + K  H     ++ I+ L+ +++           + ++
Sbjct: 429 IKGYKKWQQAWARKTKEADEEEVEKLNHLRVKFVEKINPLMFVSRQKKKTVLDITLAVYE 488

Query: 503 FF--TLILGAKKGRQQFISRFGN--------EVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
           F     +    + +Q+F +  G         ++  ++ E  +       +   +L+E   
Sbjct: 489 FIAGEHLQEKLEQQQKFFAEQGELTLAKEYEQIYRIVMELFDKFSELLGDEPITLKEYCE 548

Query: 553 ELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            L+      K        ++V I  V   +  +   +F V     +          +   
Sbjct: 549 LLDAGFEEAKVGVIPPSIDQVVIGDVERTRMKDIRALFFVGANDVLLPGNAGTGGILSER 608

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             +             +  I                   LY  +T+ ++ L +     + 
Sbjct: 609 DREKFKEKDISLSPGPKEKIYIQKFY-------------LYTALTKPTELLSLSWSKVSG 655

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS----------------------INKDEW 709
             K          +   F N   V +     S                         +EW
Sbjct: 656 EGKSLRPAYLIQELRRLFPNLSVVDEENRKLSDREITRRGGIEKVAKGICSRRLGLDNEW 715

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                          E E  +      +   +      K   ++   ++ + ++      
Sbjct: 716 KELYTWFQKDGRNKKEIESILNAGFLHKTDTRLAPELTKELYSDRNRVSVTRLEKFASCA 775

Query: 770 LESLLS-----------DNQTFNRGLIIHKLLQ-----------VIFTLPEHKRKNFITS 807
               LS             +  + G I HK L+               +PE  R   I  
Sbjct: 776 YAHFLSYGLRLSDREEYGFEALDLGNIAHKSLETFSKKADAQKMKWQEIPEALRDEMIDE 835

Query: 808 YCTK------NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK--INCPK 859
              +      N  L+ +   + ++  I RL+   +   A++        +     +    
Sbjct: 836 SVEESVIDYGNTVLFSSARNEYMITRIKRLIRTSV--WALTKQ------IEKGDFLPSGY 887

Query: 860 KDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---- 911
           +    SG+ID+I        ++  + +YKT      +I  + +    QL +Y        
Sbjct: 888 EMQFGSGKIDRIDTCFDNDCVYVKVTDYKTG-MKSFDITALYHGLQMQLPVYLNAALDVE 946

Query: 912 KDSYPNKSLV-CLLIYVSEPKVFIIPQNKLNKAFAE 946
           +  +P+K++V   + Y        + + K   A   
Sbjct: 947 QRKHPHKTIVPAGIFYYRIQDPI-VSEEKTQDAVER 981


>gi|291447589|ref|ZP_06586979.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
 gi|291350536|gb|EFE77440.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
          Length = 371

 Score = 86.9 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/268 (9%), Positives = 74/268 (27%), Gaps = 20/268 (7%)

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
            + +      +     R    +                ++++ +             ++ 
Sbjct: 14  FLTELGVEPRDVTGRPRRPLAVAALVAELRATTVDPAASDALREAAAHRLARLAALTDDE 73

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK---------TNLESL 773
                                 +    D ++   L+PS +D               +++ 
Sbjct: 74  GQPLVPAAHPYRWWGLEEPTRSAVPLRDRDQALSLSPSALDQLANTCTLQWFLGREVKAD 133

Query: 774 LSDNQTFNRGLIIHKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLL 826
                    G ++H L  +V            +            +A     +E      
Sbjct: 134 APATAAQGFGNVVHVLADEVASGRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQARA 193

Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT 885
           ++ R L   ++       + SE      +   +  + I G +D++    +   ++ ++KT
Sbjct: 194 ALERFLHWHVLDRGGRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEEDAEGRAYVVDFKT 253

Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKD 913
               P + E        QL++Y+  +++
Sbjct: 254 GKGAPTKDEVAA---HPQLAVYQLAVRE 278


>gi|42518981|ref|NP_964911.1| hypothetical protein LJ1056 [Lactobacillus johnsonii NCC 533]
 gi|41583268|gb|AAS08877.1| hypothetical protein LJ_1056 [Lactobacillus johnsonii NCC 533]
          Length = 531

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 81/628 (12%), Positives = 164/628 (26%), Gaps = 182/628 (28%)

Query: 75  TQKFTPQKNIITQEIN-------KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                 +K  I + +                ++       +  R++    K  +      
Sbjct: 56  KASEELRKRCIDKGLALNKSFFGTIDKFCFSEIIVPFCSHLSGRNQELKIKSLEENTRLR 115

Query: 128 TL-------AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
            L          +   Y   K+    L+F  L+     +LK+   +      +      I
Sbjct: 116 NLDKKNCKHVGKIIEEY--LKQDTVFLEF--LVETALYILKRVPDAT---KYLRARYREI 168

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
            IDE QD  L + ++   L +    G           AVGD  Q+IY+F G +   +   
Sbjct: 169 FIDEYQDCGLNENKMFLYLVKQGITG----------MAVGDIHQAIYAFSGKKSVYLENL 218

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
            +            F   +L  +FR    I      ++                      
Sbjct: 219 IK---------NPNFHYYKLSENFRCHPSIYQYALSLYGN-------------------- 249

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                             +      +  +    D   +              I+  I  +
Sbjct: 250 -----------------SEEAAEDDKRVFRVKIDGNEKN-------------IAQKIEEN 279

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                 +  +       +L R      ++            I      +  L D     D
Sbjct: 280 IPNIKRRYNLKSTSGFAILCRNNSTVDILNKSLT-------IPHKVYTKTKLDDDQ--SD 330

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           +  L   ++    D +         F+ + +  F    + ++  ++    QK   C I+K
Sbjct: 331 VAHLFVQLIRGYFDENIYA------FDIT-EQYFSERNKNNKYRSLLNATQKLFACPINK 383

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                             +       I+    G +       +E +  L + LN     E
Sbjct: 384 LAE-------------NITLFSHIAQIIYPDIGIEDM-----SEALSRLKDVLNDKHDYE 425

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                                        +E+ +MT+H +KGLE  V+F +D    +F  
Sbjct: 426 NYIPP----------------------KEDEISVMTIHKSKGLEFNVIFQMDMYDYIFPK 463

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +                                   +     + ++   L YV +TRA  
Sbjct: 464 ESW--------------------------------QQGGSAESWKQDLNLHYVAITRAKV 491

Query: 661 QLIICK----HSNTSNEKKSNQRTWYDM 684
              + +    ++    +K +    +YD+
Sbjct: 492 ACYLMEGSQRYNRKGIQKSAKPSPFYDL 519


>gi|317013801|gb|ADU81237.1| hypothetical protein HPGAM_01955 [Helicobacter pylori Gambia94/24]
          Length = 778

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/472 (12%), Positives = 131/472 (27%), Gaps = 82/472 (17%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLQTSDCDLSGSAL----LDLENITLALLEQQSSKEKAPLKEAHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   + + D     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVVADFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L K+ K+        L Y+    
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEVA------LSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++    H +       L  +    E+   E    
Sbjct: 480 ----------------ESETSKASNMLLELDLHTEPIKDAYTLFETSPIKEYQEEEIKAA 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++       +   L       ++ +                          +    D 
Sbjct: 524 IPKDFSF----SASSLNAFLTCKRRFYYHY-------------------IKRFKETPKDE 560

Query: 778 QTFNRGLIIHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL--LLSITRLLE 833
                G +IH+LL          H  +  +         + P +    L  L  I     
Sbjct: 561 SNSAVGSLIHELLKEAYEKDKTPHALEERLIWLLETRENITPKERLDTLVALKKIQAFYI 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT------- 885
                   +      + +        + +I  GRID+I  +    I + +YK        
Sbjct: 621 KE--KERFNAKIKI-LDLEKSFETAIQGVIFKGRIDRIDKTADNEIVLLDYKFKSDLKLD 677

Query: 886 -------HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                      P EI  I   +  Q++IY + LK+    + +      + + 
Sbjct: 678 NMSKTQRGGLSPIEIAQISTDY--QMAIYARALKNLGYKEPIKAFFYDLRKG 727


>gi|104782073|ref|YP_608571.1| UvrD/Rep family helicase [Pseudomonas entomophila L48]
 gi|95111060|emb|CAK15780.1| putative helicase; UvrD/REP family [Pseudomonas entomophila L48]
          Length = 834

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/311 (12%), Positives = 86/311 (27%), Gaps = 35/311 (11%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
            G   +ES +              + +      +++     +                 +
Sbjct: 381 LGFDPSESPQY---------QRPGAKLTVRAEWAVKR--TLLQAFCDKPLIWLDNYASAK 429

Query: 65  RFSL-LSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
           R +  L+   +       K    +    +          ++    +         ++   
Sbjct: 430 RLAASLAGDAMAGPGFEYKVKGELAPAPLLDAFVTAASFIENLGLDVNVAVTAM-SFPAG 488

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLL--KKRDVSAWIRYKIDQE 176
            S  A            E         V+ +         L      +  A +   + + 
Sbjct: 489 DSDAAFFEALALYWKALEAHLMAQSPPVMTYN----RMFALFGENNPENLALLPDPLLRP 544

Query: 177 INHILIDEVQDTSLIQWEVIRS-LTEDFFVGKNTHSS----PRTLFAVGDEKQSIYSFHG 231
           + H++IDE QD S      +R+ L E    G + H        +L  VGD+ QSIY + G
Sbjct: 545 LAHLMIDEFQDVSPQIVSWLRASLAEIRRRGPDRHVGRAAQHSSLMCVGDDWQSIYGWRG 604

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           + PK  +   +             + + L  ++RS   I+   + +        G    +
Sbjct: 605 SSPKYFMEFTKAFP------SPSNTRVMLVENYRSQQHIIDAAEHLVKGAPAIAGKKARA 658

Query: 292 TTTIRHRSSRI 302
           +          
Sbjct: 659 SGLAATLPLSP 669


>gi|317181701|dbj|BAJ59485.1| hypothetical protein HPF57_0411 [Helicobacter pylori F57]
          Length = 778

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/486 (12%), Positives = 127/486 (26%), Gaps = 74/486 (15%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFT-LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            ++K + +L       S         L      QQ                  + L  + 
Sbjct: 314 ELVKILEDLETSGFDLSASPLLDLENLTIPLLEQQSSKEKAPLKEAHSQIMHQYHLLKDA 373

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               SL++L+    Q      R   ++  ++R+M     +G++   + +VD         
Sbjct: 374 LKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSL 433

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
               + +  +L     +P  + +   + +    L K+ K         L Y+        
Sbjct: 434 KDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EMALSYI-------- 479

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
                       +    +    ++    H +       L  S    ++   E  T  P++
Sbjct: 480 ------------ESETSKVSNMLLELDLHIEPIKDAYTLFESTPLKDYQEEEIKTAIPKD 527

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
                            +   L    +   +       S  D                  
Sbjct: 528 FSF----------SASSLNAFLTCKRRFYYHYIQRFKESPKDESNS-------------A 564

Query: 782 RGLIIHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMM 837
            G +IH+LL          +  +  +         + P +    L+    I         
Sbjct: 565 VGSLIHELLKEAYEKDKNPYALEERLIQLLETRENITPKERLDTLIALKKIQAFYVKE-- 622

Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT----------- 885
                      + +        + +   GRID+I  +    + + +YK            
Sbjct: 623 KERFHAKIKI-LDLEKSFETTIQGVAFKGRIDRIDKTADNEMILLDYKFKSDLKLDNMSE 681

Query: 886 ---HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
                  P EI  I   +  Q++IY   LK+      +      + + K+    +  L  
Sbjct: 682 KQRGSLNPIEIAQISADY--QMAIYAFALKNLGYKGPIKAFFYDLRKGKLLEEEEPVLQA 739

Query: 943 AFAEIS 948
               + 
Sbjct: 740 KMDYLK 745


>gi|228470651|ref|ZP_04055507.1| ATP-dependent DNA helicase, UvrD/REP family [Porphyromonas uenonis
           60-3]
 gi|228307659|gb|EEK16638.1| ATP-dependent DNA helicase, UvrD/REP family [Porphyromonas uenonis
           60-3]
          Length = 550

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 26/146 (17%)

Query: 135 AHYEEAKK---KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             Y   K+       + F+D++  +  LL +      I   I     +I +DE QDT   
Sbjct: 173 DCYMGFKRWLWSRGYMSFDDILYFSYILLSRYPH---IYKLIKARYPYIFVDEFQDTIPF 229

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
             + +  L           +    +  VGD+ QSIY F GA  ++               
Sbjct: 230 VVDFLTQL----------GNKGVIVGVVGDKAQSIYDFLGATVQQFDSF----------T 269

Query: 252 GQKFSIIELPLSFRSTADILTVVDKV 277
             +    E+  + RST  I+ +++ V
Sbjct: 270 VPEMQEYEIRGNRRSTKQIIDLLNIV 295


>gi|302385433|ref|YP_003821255.1| ATP-dependent nuclease subunit B [Clostridium saccharolyticum WM1]
 gi|302196061|gb|ADL03632.1| ATP-dependent nuclease subunit B [Clostridium saccharolyticum WM1]
          Length = 1148

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 80/674 (11%), Positives = 179/674 (26%), Gaps = 129/674 (19%)

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
           I    + + ++ +D+ V+     D    +           I    +D+  +  +  ++ +
Sbjct: 340 IEEEIRYQGLRYRDMAVIT---GDIGGYSNEIIHQFQLNGIPYFLDDKKSILKNSMVELI 396

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDD----------IFKICTQRHETETVYEYIQ 471
            A    I       S    L++ L    ED+          I        + ++ +E   
Sbjct: 397 RAAMEIIQKDFTYESVFRYLRTGLITAKEDEEKADRLENYVIAMGIRGFKKWDSQWEGWY 456

Query: 472 --------KFANCGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFISRF 521
                   +  N    +    ++ +            S     T +L     +++ ++  
Sbjct: 457 RGGKELNLEELNRYREEIMAPLRRLKAAFGETDSTVASMTRAVTALLMETGIQEKMLA-- 514

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH------------ 569
             E    + EF    +   Q     +                                  
Sbjct: 515 YEEKFRAMGEF-TLAMEYSQVYGLVMDLFDRLAGLLGEEHVSRREYGEILDAGFSEIQVG 573

Query: 570 ------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + V +  +   +     V+F V     +   K  K         +  G      
Sbjct: 574 LIPATLDRVVVGDITRTRLDHIKVLFFVGVNDGIVPVKKEKSSLFTDREREFLGDHQMEL 633

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
              +R                      LY+ +T+   +L++   +   + K     T   
Sbjct: 634 APTAREEGFRQ-------------RFYLYLALTKPEKRLVLSYAAMNGSGKSLRPSTLIG 680

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAY------EWSTHHPENTPLEREETIKQLMDEQ 737
            +   F         +L+  +   E          ++     E   LE      +  + +
Sbjct: 681 ELKKLFPGLSEASPSRLSVPLTMREAKDRLADGLRDYGKRGEERRFLELLRAFLKSGEHR 740

Query: 738 KIPKKLFSPIKNDINEP-------YILNPSTIDTK------------------GKTNLES 772
           +  K+L     +   E          L  S I                     G   +E 
Sbjct: 741 EEGKRLTEAAFHAYEEKGIGKLAAKALYGSVISGSVTRMEQYASCAYAHFLSYGLELMER 800

Query: 773 LLSDNQTFNRGLIIH----KLLQVIFT-------LPEHKRKNFITSYCTK------NAKL 815
              +    + G + H       Q +         L E +RK+ +    TK      N  L
Sbjct: 801 QEYELAAMDIGNLFHDAIGLWFQRMKEEGRDFKTLTEEERKSLVHECVTKVTEEYGNTIL 860

Query: 816 WPAKEYKNLLLSITRLLENP--MMTTAMSCDSYSEVSVSGKINCPK------------KD 861
             +     L   + R+ +     ++  +    +  V      +               + 
Sbjct: 861 KSSARNAYLAGKVERITDRTVWALSEQLKKGDFVPVGFEVSFSAADQLKAMRIPLSKEEA 920

Query: 862 IIISGRIDQ--ISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KD 913
           I + GRID+  +   ++ ++  I +YK+      ++  + Y    QL +Y        + 
Sbjct: 921 IHLRGRIDRLDLCEDEEAVYVKIIDYKSGSTSF-DLSSLYYGLQLQLVVYMDAALEMEER 979

Query: 914 SYPNKSLV-CLLIY 926
              +K +V   + Y
Sbjct: 980 RVEDKPVVPAGIFY 993


>gi|145641649|ref|ZP_01797226.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021]
 gi|145273696|gb|EDK13565.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.4-21]
          Length = 477

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/436 (12%), Positives = 122/436 (27%), Gaps = 80/436 (18%)

Query: 547 LQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           L     +++ +     +    +     +I+++H +KGLE  +V+L               
Sbjct: 2   LSWFEKQIQGEGRQEAQIRLESERQLAKIVSIHKSKGLEYDLVWLPFLA----------- 50

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--- 662
           +        D  I     + ++  +I +  +  L + T  E  RLLYV +TRA  Q+   
Sbjct: 51  VPSKDPSKKDINIYYSKERDETLWDIENRNLNALCEETFAEELRLLYVALTRAKYQMAFA 110

Query: 663 -------------IICKHSNTSNEKKSNQRTWYDMVYDSF-------------HNDERVK 696
                         +        E   +     + +  +F              N E   
Sbjct: 111 LPTQFDKKWNALHYVLSQGEIGKEINLSDSKDTETLLQAFKEKMRDNVEICTKPNLEAFP 170

Query: 697 KIKLTNSINKDEWIAYEWS-THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
            + +    +  +   +  +       T     E   +  +           + +D  +  
Sbjct: 171 ALSINTKNDDLKAAEFTGNIEQDWRITSFTSIEQAHRRQNYFTESAGKKHAVFDDAKDYD 230

Query: 756 ILNPSTIDTKGKTNLESL-LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
             N   + T      ES  L   +    G  +H+  +  +       +       +    
Sbjct: 231 SQNAIEMSTALLNENESNILDLPRGKQVGTALHRHFENCYFSDLANTEEIDKLRQSLQLD 290

Query: 815 LWPAKEYKNLLLSITRL-LENP---MMTTAMSCDSYSEVSV------------------- 851
               +  +N L  I+   L +     +    + D   E+                     
Sbjct: 291 ETFTEPLQNWLQQISHTPLSHEIGIALADLANKDCIKEMPFYLAIREHFDVEAFNHALKA 350

Query: 852 -----SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIP 897
                S  +   +   ++ G ID +       ++ +YK++              + E + 
Sbjct: 351 HHHLSSEPLQFEQIQGMVRGSIDLVFRHNGKYYLVDYKSNFLGSTLADYNQEALKKEMLH 410

Query: 898 YTHIAQLSIYEKILKD 913
             +  Q  IY   +  
Sbjct: 411 SHYDWQYLIYTLAVHR 426


>gi|315930993|gb|EFV09968.1| ATP-dependent DNA helicase, UvrD/REP family domain protein
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 216

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 23/173 (13%)

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
             ++P  + ++ K + +           G   H  +Q +        +       +K   
Sbjct: 55  EKISPQEVQSEEKLDSKE-------LYFGNAFHFFMQNLKLPKGENFQMLTQRCKSKFRH 107

Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRIDQISI 873
                +++ L   I  LL+N      +       E ++S   N   K +      D +++
Sbjct: 108 FLDESDFEKLFKRIEILLKNTQFQNLIGDGKLLKEQALS--FNGEIKQL------DLLAL 159

Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             +  FI +YKT          +   H  Q+  Y+  + +      +   ++Y
Sbjct: 160 KDEEAFIIDYKTG-------LAMQDKHKEQVRTYKIAISEILKKDKVRAFIVY 205


>gi|153813841|ref|ZP_01966509.1| hypothetical protein RUMTOR_00047 [Ruminococcus torques ATCC 27756]
 gi|317501977|ref|ZP_07960161.1| hypothetical protein HMPREF1026_02105 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145848237|gb|EDK25155.1| hypothetical protein RUMTOR_00047 [Ruminococcus torques ATCC 27756]
 gi|316896657|gb|EFV18744.1| hypothetical protein HMPREF1026_02105 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 1131

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 87/696 (12%), Positives = 203/696 (29%), Gaps = 129/696 (18%)

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A+ +A +I  ++ T         +  + +DI V+     D  +   +       + I V
Sbjct: 321 EAKYVAESIRRLVRT---------KGYRYRDIAVIA---SDMNVYADVLEKACASFDIPV 368

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ----- 459
             + +  +  +  ++ + +L   I       S    L+S    F+ED+I ++        
Sbjct: 369 FMDHKKSILLNSFVEYVRSLLGMIQENFTYESVFRYLRSGYCEFTEDEIDRLENYCLALG 428

Query: 460 ----RHETETVYEYIQKFANCGISKFQH----VIKYIHELIHIAQ---------FCSPHD 502
               +   +      ++     + K  H     ++ I  L+ +++           + ++
Sbjct: 429 IKGYKKWQQAWARKTKEADEEEVEKLNHLRVKFVEKIDPLMFVSRQKKKTVLDITLAVYE 488

Query: 503 FF--TLILGAKKGRQQFISRFGN--------EVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
           F     +    + +Q+F +  G         ++  ++ E  +       +   +L+E   
Sbjct: 489 FIAGEHLQEKLEQQQKFFAEQGELTLAKEYEQIYRIVMELFDKFSELLGDEPITLKEYCE 548

Query: 553 ELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            L+      K        ++V I  V   +  +   +F V     +          +   
Sbjct: 549 LLDAGFEEAKVGVIPPSIDQVVIGDVERTRMKDIRALFFVGANDVLLPGNAGTGGILSER 608

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             +             +  I                   LY  +T+ ++ L +     + 
Sbjct: 609 DREKFKEKDISLSPGPKEKIYIQKFY-------------LYTALTKPTELLSLSWSKVSG 655

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS----------------------INKDEW 709
             K          +   F N   V +     S                         +EW
Sbjct: 656 EGKSLRPAYLIQELRRLFPNLSVVDEENRKLSDREITRRGGIEKVAKGICSRRLGLDNEW 715

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                          E E  +      +   +      K   ++   ++ + ++      
Sbjct: 716 KELYTWFQKDGRNKKEIESILNAGFLHKTDTRLAPELTKELYSDRNRVSVTRLEKFASCA 775

Query: 770 LESLLS-----------DNQTFNRGLIIHKLLQ-----------VIFTLPEHKRKNFITS 807
               LS             +  + G I HK L+               +PE  R   I  
Sbjct: 776 YAHFLSYGLRLSDREEYGFEALDLGNIAHKSLETFSKKADAQKMKWQEIPEALRDEMIDE 835

Query: 808 YCTK------NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK--INCPK 859
              +      N  L+ +   + ++  I RL+   +   A++        +     +    
Sbjct: 836 SVEESVIDYGNTVLFSSARNEYMITRIKRLIRTSV--WALTKQ------IEKGDFLPSGY 887

Query: 860 KDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---- 911
           +    SG+ID+I        ++  + +YKT      +I  + +    QL +Y        
Sbjct: 888 EMQFGSGKIDRIDTCFDNDCVYVKVTDYKTG-MKSFDITALYHGLQMQLPVYLNAALDVE 946

Query: 912 KDSYPNKSLV-CLLIYVSEPKVFIIPQNKLNKAFAE 946
           +  +P+K++V   + Y        + + K   A   
Sbjct: 947 QRKHPHKTIVPAGIFYYRIQDPI-VSEEKTQDAVER 981


>gi|312965416|ref|ZP_07779648.1| uvrD/REP helicase family protein [Escherichia coli 2362-75]
 gi|312289836|gb|EFR17724.1| uvrD/REP helicase family protein [Escherichia coli 2362-75]
 gi|323159373|gb|EFZ45358.1| uvrD/REP helicase family protein [Escherichia coli E128010]
          Length = 621

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/451 (13%), Positives = 132/451 (29%), Gaps = 88/451 (19%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +I     LL + +  ++IR  +      + +DE QDT+  Q++++               
Sbjct: 194 MINRLVKLLLQEN--SYIRRALQATYPIVFLDEYQDTTYAQYDML---------LTAFDG 242

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
           S     AVGD+KQ I  + GA      + +     R          I L  ++RS  D++
Sbjct: 243 SDAVFTAVGDDKQRIMGWAGAMNDAFDQFENDFAAR---------RITLLSNWRSHVDLV 293

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
                        +   +D+   ++ + +R  +     +W+   +  ++    +  S   
Sbjct: 294 R-----IQHEIARR--IDDNVEEVQAQGTREIEGEVSAIWQFRSADDENNYLAEWVSREV 346

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
             + +     A      I   +        I  +   R ++ ++    V        I  
Sbjct: 347 QSERVAPHDVA------ILIRMRADQVEGEIAPSFAARGLRIRNAARSV----GEIQIQD 396

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF-ILSQEDDLSFVCMLKSPLFNFSE 450
           L         + ++       +     +             ++DL+   +L         
Sbjct: 397 LLGEELTGIFVPLLRLGATERSPENWEQTQQNYLFLEAADPDNDLTQERLLV-------- 448

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH-ELIHIAQFCSPHDFFTLILG 509
                                        K +  ++ +  EL H        +    +L 
Sbjct: 449 -----------------------------KLEAFVRKLRTELAHRQPSPDSAEEIAEMLL 479

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ--NSYSSLQELISELEQYPPTIKRAHSA 567
              G  +    F                  E+  + + +L +  +E              
Sbjct: 480 EFVGTPRLRQSFPA---------YQRARDFERVWSGFVTLLKECAEHSSSWTEA-LDEFE 529

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              +V +MTVH +KGLE   +      +Q +
Sbjct: 530 GIGQVALMTVHKSKGLEFHTMIFYGLDNQTW 560


>gi|291443539|ref|ZP_06582929.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291346486|gb|EFE73390.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 290

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 65/222 (29%), Gaps = 35/222 (15%)

Query: 757 LNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
           ++PS      +  L              ++   RG ++H +L+ +F +P   R       
Sbjct: 1   MSPSRASDFMQCPLLYRFRVIDKLPEKPSEAATRGTLVHAVLERLFDVPAADRTAPRARA 60

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY------------------SEVS 850
                     +    L        E   +T  +                        E+ 
Sbjct: 61  LIPGQWDRLLESKPELSDLFAGDSEGERLTRWLGEAERLVDRWFSLEDPTRLEPAEREMF 120

Query: 851 VSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
           V  ++      + + G ID++ I+    + I +YKT      E    P   + Q++ Y  
Sbjct: 121 VETELES---GLRLRGVIDRVDIAPSGEVRIVDYKTGKAPRPEYSDGP---LFQMTFYAL 174

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           ++            L+Y+    V        +     +  K+
Sbjct: 175 VIWRLKGVVPRRLQLVYLGSGDVMTYDPVVAD--LERVERKL 214


>gi|291458761|ref|ZP_06598151.1| putative ATP-dependent nuclease subunit B [Oribacterium sp. oral
            taxon 078 str. F0262]
 gi|291418678|gb|EFE92397.1| putative ATP-dependent nuclease subunit B [Oribacterium sp. oral
            taxon 078 str. F0262]
          Length = 1159

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 85/738 (11%), Positives = 188/738 (25%), Gaps = 107/738 (14%)

Query: 283  NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
            N             H   R      +   E+ + ++ +     +         + + +  
Sbjct: 279  NRFDALTGRARNPSHPLPRFQNAPALDYLERSLYRYSAAGTEGRNFALDGSIEIWEAADQ 338

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
             +   R+A  I   +  +          ++ +DI VL+    +      L         I
Sbjct: 339  RMEIERLASEIERAVREE---------GLRYQDIAVLI---SEPEQYRDLIYRCFLAAGI 386

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD--IFKICTQR 460
                +D   L D    K L A    +       S +  L++      E++  I       
Sbjct: 387  PYFLDDPGSLLDSPPAKLLRAAIEVLERAFSFDSVIRCLRALPGRTPEEENEIDLFENWL 446

Query: 461  HETETVYEYIQKFANCGISKFQH-------------------VIKYIHELIHIAQFCSPH 501
             E         +         +                      + I  L          
Sbjct: 447  RERGIRGAAAYQREWEHFDSLRRKLAGPLLRLLSEGNERGASASRRISALRGFLTELRAR 506

Query: 502  DFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            ++ +      +   +Q  +      +D ++E L         +  S +E    L+     
Sbjct: 507  EYISKEAERLREIGEQNRAEELLRGMDAVEELLLRFSELLGETRISRREFSELLDAGLSE 566

Query: 561  IKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                      ++V I  +  ++       FLV   +            +           
Sbjct: 567  ASIRIIPATLDQVVIGDLTRSRFSSPKRFFLVGVSAGALPGSGKGTGILGDRERALLRSL 626

Query: 620  -IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA----SDQLIICKHSNTSNEK 674
             I +   ++ + ++     +       E   L Y    R         +I          
Sbjct: 627  SIELAPDQAEDALLQRFYIYRALLNPSEKLLLSYPLRGRNGKSRKPSPLIEALRGIFPGL 686

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                         +     R     L   + + E            +   E  E   +  
Sbjct: 687  SIRSLRHEPEEIYTREELLRSLSRTLPLYLEERERKEAREDKGESASEGREAVEAPSEGR 746

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------------------- 775
                    L  P   D     +    T    GK + E                       
Sbjct: 747  LLSGFSALLRDPSYRDRASKLLDAAFTSYQSGKLDREIAEEIYGEILYGSITRLEQYNRC 806

Query: 776  ------------------DNQTFNRGLIIHKLLQVIFT--------LPEHKRKNF----- 804
                              + +  + G + H  ++ +F         LPE  R+       
Sbjct: 807  AYAHFLRYGLQLSERKSNEVRALDLGNLYHLAMEELFRELSKRGQSLPELSREEACALSD 866

Query: 805  ---ITSYCTKNAKLWPAKEYKN-LLLSITRLLENP--MMTTAMSCDSYSEVSVSGKINCP 858
               + +    N ++         LL  I+ +       ++  +    +    +    +  
Sbjct: 867  ACVLRASEQYNERMMQDSARNRYLLRRISEICRTTVWALSEQLRRGDFRPAFLEKDFHLT 926

Query: 859  KKDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIY-EKILKD 913
            +    +SGRID++    ++++I+  + +YK+   V  ++  I      QL+ Y +  L++
Sbjct: 927  RPGFRLSGRIDRVDLCETEKSIYVKVLDYKSGRTVF-DLNRIYEGLQLQLATYLKVALEE 985

Query: 914  S---YPNKSL--VCLLIY 926
                YP K +    +  Y
Sbjct: 986  LQRDYPGKEVLPAAMFYY 1003


>gi|269138628|ref|YP_003295328.1| DNA helicase IV [Edwardsiella tarda EIB202]
 gi|267984288|gb|ACY84117.1| DNA helicase IV [Edwardsiella tarda EIB202]
 gi|304558640|gb|ADM41304.1| DNA helicase IV [Edwardsiella tarda FL6-60]
          Length = 700

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 84/262 (32%), Gaps = 33/262 (12%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
           SQ     +  +LL      ++   Q   +   +  +       L++       + ++ + 
Sbjct: 336 SQANGWRQWLTLLFDALPEREDFWQDTALQARLAPRLAYWIGLLREHGGSQAAMVEQASE 395

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                       L   L   ++ A K+   LDF          L ++  +   + +    
Sbjct: 396 ALRAPFQQRL-RLLAPLLKAWKAALKQEGALDFP--------ALLQQAQAQLEKGRFISP 446

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             HIL+DE QD S  +  ++ +L           +S   LFAVGD+ Q+IY F GA+   
Sbjct: 447 WRHILVDEFQDISPQRARLLAALRS--------QNSHSALFAVGDDWQAIYRFSGAQLTL 498

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                            +     L  S+R    I  + +       +    +        
Sbjct: 499 TTAFHHYF--------GEGECCRLDTSYRFNRRIGEIANGFVQQNPHQAKKT-------- 542

Query: 297 HRSSRIGQVGTVQLWEQVVSQH 318
             + R G   +V L  Q   + 
Sbjct: 543 LNALRDGDRQSVTLLPQDQLEA 564



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 103/351 (29%), Gaps = 38/351 (10%)

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           ++     D     +  + LA R+AY I  +       +   ++  +A       R R   
Sbjct: 350 DALPEREDFWQDTALQARLAPRLAYWIGLLREHGGSQAAMVEQASEALRAPFQQRLRLLA 409

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML----- 441
           PL+      LK +  +      +         + +      ++ +  D+S          
Sbjct: 410 PLLKAWKAALKQEGALDFPALLQQAQAQLEKGRFISPWRHILVDEFQDISPQRARLLAAL 469

Query: 442 -----KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIH 493
                 S LF   +D          +      +   F      +        + I E+ +
Sbjct: 470 RSQNSHSALFAVGDDWQAIYRFSGAQLTLTTAFHHYFGEGECCRLDTSYRFNRRIGEIAN 529

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                +PH     +   + G +Q ++       D L+  L+      +   S L      
Sbjct: 530 GFVQQNPHQAKKTLNALRDGDRQSVTLLP---QDQLEALLDKLSGYVRADESILILARYH 586

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
             +     + A      ++  MT+H +KG ++  V ++            +   ++  + 
Sbjct: 587 HLRPALLDRAATRWPGLDLHFMTLHGSKGCQADYVIVLGLHEGRDGFPAPEAPSVIEEVL 646

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                P                          E  RLLYV +TRA  ++ +
Sbjct: 647 LPAAEPFPD----------------------AEERRLLYVALTRARHRVWL 675


>gi|238892774|ref|YP_002917508.1| putative helicase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545090|dbj|BAH61441.1| putative helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 557

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 136/452 (30%), Gaps = 102/452 (22%)

Query: 151 DLII-NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           DLI     D+L    +   I        +H+ IDE QDT   Q+E+I+ L +D       
Sbjct: 136 DLIRSLALDILT---IRTDIVDLFSLTYSHVFIDEFQDTRSDQYEMIKLLFKD------- 185

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 L AVGD  QSI  + GA+       ++             +   L  +FR++ +
Sbjct: 186 --KGTQLLAVGDINQSIMLWAGAKKTVFEDCEKEF---------NTTKKLLVHNFRASEE 234

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I                                      ++    +    +  N      
Sbjct: 235 I-------------------------------------QEVLRCFIHFVQNDANFTPIIK 257

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
           +    ++    +    A  IA  I+  I +           I+ K+I VLV  ++ +   
Sbjct: 258 SIDNCTIHYYDNELSEADDIADKIARFITSG----------IEEKEICVLV--KQQSEQY 305

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
           T   R       I  +            +  + A    + +     S+  +         
Sbjct: 306 TEKLRDKLTTKGIRNLDLSELQDVLKEPLGQIFAALFKVYTSRSSSSYTEL--------- 356

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
             D++    +    +   + + K  +       ++ +    L       S       I+ 
Sbjct: 357 -CDLYLELHRVSRGDEKEDALIKVLSD------NIAENKKNLGDEPSPDSLITCIKDIIT 409

Query: 510 AKKGRQ---QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
               ++   ++      +  D +   L   LR   ++  SL E     +           
Sbjct: 410 LFGVKRMVGRWNQYKSADYWDKIWRNLEQHLRYTIDATHSLNEAALMFQA---------- 459

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              N V++M VH  KGLE  VV  +    Q F
Sbjct: 460 --ENSVQVMNVHKCKGLEYKVVIFLGLEDQAF 489


>gi|111017871|ref|YP_700843.1| hypothetical protein RHA1_ro00852 [Rhodococcus jostii RHA1]
 gi|110817401|gb|ABG92685.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 301

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 72/218 (33%), Gaps = 37/218 (16%)

Query: 749 NDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
           +       L+PS      +  L            + ++   +G ++H  L+ +F LP  +
Sbjct: 22  SATRRRPALSPSRAGDFKQCPLLYRFRAVDRLPEAPSRAQVKGTVVHAALETLFGLPAAE 81

Query: 801 RKNF---------ITSYCTKNAKLWP---AKEYKNLLLSITRL------LENPMMTTAMS 842
           R                  +   L      +E    L     L      LE+P       
Sbjct: 82  RVPQKAVDLILPSWERILAEAPDLIDLVPDEERDAFLDEARSLVTTYYELEDPT---RFE 138

Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI 901
            +S  E  V  ++      +++ G +D+I ++    + + +YKT     +  E      +
Sbjct: 139 AES-CEQRVETELA---DGVLLRGFVDRIDVAPTGEVRVVDYKTGRAPREMSESKA---L 191

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            Q+  Y  +L  +         L+Y++   V     ++
Sbjct: 192 FQMKFYALVLLRTRGIVPAQLRLLYLASGTVLTYAPDE 229


>gi|330889434|gb|EGH22095.1| UvrD/REP helicase [Pseudomonas syringae pv. mori str. 301020]
          Length = 925

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 29/202 (14%)

Query: 101 KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
           +        +     T++          +    N   E  K     LDFED++I   + +
Sbjct: 524 EDLLRRIDDLPSGLFTHRYSMFLDILWPVMDAWNEELERVKG----LDFEDMLIKAAEHV 579

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +        + +   +   ++ DE QD S  +  + R+L              R  FAVG
Sbjct: 580 E--------QGRCMPKFKLVMADEFQDASRARARLCRALVS---------VPGRHFFAVG 622

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSI  F GA+   +   KR              +++L  +FR    +  V  +  S 
Sbjct: 623 DDWQSINRFAGADVSVMTDFKRFY--------GSGQLLKLEQTFRCPQALCDVSSRFVSK 674

Query: 281 PENAQGLSEDSTTTIRHRSSRI 302
                     S T     + R 
Sbjct: 675 NPVQLTKRVYSKTPAVGPTLRA 696



 Score = 43.4 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 20/99 (20%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V  ++VH +KG E+  V L    S                           P + + + +
Sbjct: 762 VSFLSVHRSKGTEADYVILPAMVSVRRGRSF--------------------PSTMTDDPV 801

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           +  ++         E  RL YV +TRA   +++      
Sbjct: 802 LRLVMPEGDSYLFAEERRLFYVALTRARRTVMMYTVQKQ 840


>gi|71736159|ref|YP_274858.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556712|gb|AAZ35923.1| UvrD/REP helicase family protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 830

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 94/334 (28%), Gaps = 35/334 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +  ++ + ++H++IDE QD S      IR+   +         + R     +
Sbjct: 521 TSPENLKHVSDQMLRPLSHLMIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +                 + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFASEFS------SPATTRVMLSDNFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +        G              R   +    L   V+ + + +   +     +  DS
Sbjct: 635 HIVRAAPAIAGKKA-----------RASGMPQELLPVTVLDRDEDELAERVAEHYNDGDS 683

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           +           R +  +  +I  D       +R+             K           
Sbjct: 684 ILLLYRKGSEKSRFSERLQALIDADAAMGAQGRRIRTLT-----YHSSKGLQADAVFLLG 738

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
                 +S   N  + L       DL           D      +L+      +      
Sbjct: 739 DCQHLTVSPYKNQVYRLAGLGDASDL--------QPFDTAQKDEVLRLAYVAITRAARHC 790

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                  T          A+  I++ +   + + 
Sbjct: 791 YWYIDQGTGGGENAQMPKASDRIAQDKPFFEDLR 824



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 89/306 (29%), Gaps = 37/306 (12%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  + A  R I  +   L    + +        DD   I   R  +  
Sbjct: 541 MIDEFQDVSPQIVSWIRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 600

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +    +FA+   S     +                +       A  G++   S    E+
Sbjct: 601 YF---MEFASEFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIAGKKARASGMPQEL 657

Query: 526 ------IDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSANHN 570
                     DE       +  +  S L               L+        A  A   
Sbjct: 658 LPVTVLDRDEDELAERVAEHYNDGDSILLLYRKGSEKSRFSERLQAL-IDADAAMGAQGR 716

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +R +T H++KGL++  VFL+     +    +  +++ +  L D                
Sbjct: 717 RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGD---------------- 760

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
             +  ++    + ++E  RL YV +TRA+          T   + +      D +     
Sbjct: 761 --ASDLQPFDTAQKDEVLRLAYVAITRAARHCYWYIDQGTGGGENAQMPKASDRIAQDKP 818

Query: 691 NDERVK 696
             E ++
Sbjct: 819 FFEDLR 824


>gi|312976769|ref|ZP_07788518.1| putative helicase [Lactobacillus crispatus CTV-05]
 gi|310896097|gb|EFQ45162.1| putative helicase [Lactobacillus crispatus CTV-05]
          Length = 620

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 68/463 (14%), Positives = 151/463 (32%), Gaps = 90/463 (19%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           ++   L FE +      +++      ++R+ I      + +DE QDT+++Q+++ R    
Sbjct: 174 EEKTYLTFEMISRLALYIIQHN---KYVRHIIRSAFPFVFLDEFQDTTVLQYDIFRECFL 230

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +             + AVGD KQ I  + GA+ +   +  R  +          + + L 
Sbjct: 231 NSES---------KITAVGDNKQQIMLWAGADKEIFGKYTREFR---------ATKVFLK 272

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            + RS  +I+ +           + + +D    I    ++    G V L E      +++
Sbjct: 273 ENHRSALNIVKL------QKLMYEKIDKDINPDIIINKNKDE--GKVFLIETNEPSKEAE 324

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              +                       I   I                 ++  +I +LV+
Sbjct: 325 IVGEN----------------------IIKEIR--------------MGVKPSEIAILVK 348

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
           +R +        +       ++V    ++  T    I  L  + + IL      + + ++
Sbjct: 349 QRPE--DYIRNIKEYLKTKNVTVRVESKYTETFSEPIVKL--ILKMIL------ASINVI 398

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI-HELIHIAQFCSP 500
                     +  ++  +  E   +     +     I K    +  +   L+        
Sbjct: 399 NG-------QEWQELVDETSEIFLINLADAEIEQKYIKKLNVFLDKLFKNLLVQVHENRS 451

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL--ISELEQYP 558
              +   +         I+R      + L+  ++   R +      L+E   I+EL    
Sbjct: 452 KSNYYCKIVESIIDFFTINRLQVYYPEYLE--IDQLNRTKTQFIEQLKECGSINELNTDI 509

Query: 559 PTIKRAHSAN---HNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             I +    N    N +  +T+H +KGLE   V+ +      F
Sbjct: 510 KEIWKEIIDNYLGKNSIATLTIHKSKGLEYNSVYFIGLEDSAF 552


>gi|227876814|ref|ZP_03994923.1| possible ATP-dependent DNA helicase [Mobiluncus mulieris ATCC
           35243]
 gi|227842711|gb|EEJ52911.1| possible ATP-dependent DNA helicase [Mobiluncus mulieris ATCC
           35243]
          Length = 421

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 79/291 (27%), Gaps = 42/291 (14%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            EE    L+   L     P  +   + + K    L  +            + F +     
Sbjct: 89  HEEAIDELAGDCLVDAGVPNSSSNRKILVKGLDFLLAR--------EFSLEGFASSSSTL 140

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
           +      L + L +        N +  F   +     LL+             Q    ++
Sbjct: 141 AAAKLPRLTESLYS----QMVANGLATFNMWVYLAVLLLENNPD---FLKAQSQRWQTVI 193

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD + +   +IR L                L  VGD  Q I+ + GA  +      
Sbjct: 194 VDEAQDLTPLLAHLIRLLAG-----------GSRLVIVGDPCQEIFGYSGAGIRWFTD-- 240

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                        +    L   FRS  +IL VV++      +   +S  +          
Sbjct: 241 -----------PGWEEYHLTTCFRSAPEILEVVNR---ARTDGLTVSAANPRLAGSVERH 286

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
               G             S       +  +   +  + +   + A  I Y 
Sbjct: 287 SYDPGNKDWDRLFADNIRSSREAGTVAVLAPTHAELRRAGKILDAAGILYR 337


>gi|317497575|ref|ZP_07955893.1| type-2 restriction enzyme MjaII [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895134|gb|EFV17298.1| type-2 restriction enzyme MjaII [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 110

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 30/77 (38%)

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
              +++ G ID     +  I + +YKT      E + +   + AQ+  Y++ L+      
Sbjct: 32  DDFVVVQGIIDVYFEEEDKIILVDYKTDRVREGEEDILIRRYRAQMESYQQALEKITGKC 91

Query: 919 SLVCLLIYVSEPKVFII 935
                +  V+  K   +
Sbjct: 92  VKEIYIYSVTLQKTIPV 108


>gi|330982508|gb|EGH80611.1| UvrD/REP helicase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 392

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 24/215 (11%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +   + + + H++IDE QD S      +R+   +         + R     +
Sbjct: 31  TSPENLKHVSDPMLRPLAHLMIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSS 90

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 91  LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTRVMLSDNFRSHQHIIDAAE 144

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ-VVSQHDSQCNPQQESWTSYFD 334
            +        G    ++  ++            +L    V+ + + +   +        D
Sbjct: 145 HIVRAAPAIPGKKARASGLLQ------------ELLPVKVLDRDEDELAERVAEHYHDGD 192

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           S+      S    R +  +  +I  D+      +R
Sbjct: 193 SILLLYRKSSEKARFSARLQALIDADSANGAQNRR 227



 Score = 39.1 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 86/311 (27%), Gaps = 41/311 (13%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  L A  R I  +   L    + +        DD   I   R  +  
Sbjct: 51  MIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 110

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL--------GAKKGRQQF 517
            +    +FA    S     +                +               A    Q+ 
Sbjct: 111 YF---MEFAKEFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIPGKKARASGLLQEL 167

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSAN 568
           +     +  +  DE       +  +  S L             + L+          + N
Sbjct: 168 LPVKVLDRDE--DELAERVAEHYHDGDSILLLYRKSSEKARFSARLQALIDADSANGAQN 225

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +R +T H++KGL++  VFL+     +    +  +++ +  L D   +  +       
Sbjct: 226 R-RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGDTNDLQPF------- 277

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                        + ++E  RL YV +TR++         + ++          D +   
Sbjct: 278 -----------DTAQKDEVLRLAYVAITRSARHCYWYIDESATSGDAVQMPKASDRIARV 326

Query: 689 FHNDERVKKIK 699
                +   I 
Sbjct: 327 IDQHVQGSDIF 337


>gi|239978583|ref|ZP_04701107.1| hypothetical protein SalbJ_04062 [Streptomyces albus J1074]
          Length = 272

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 66/207 (31%), Gaps = 41/207 (19%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPE--------------------HKRKNFITSYCTKN 812
               +    RG ++H +L+ +F  P                      +R      +  + 
Sbjct: 16  PEKPSPAATRGTLVHAVLERLFDAPAAERTAPRATGLLPGEWERLLAERPELAELFSGEE 75

Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMS-------CDSYSEVSVSGKINCPKKDIIIS 865
            +  P +  +  L    RL+E        +         +  E+ V  ++      + + 
Sbjct: 76  GESTPGERLERWLGEAERLVE-----RWFTLEDPTRLEPAERELFVEAELES---GLRLR 127

Query: 866 GRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924
           G ID++ ++    + I +YKT      +        + Q++ Y  ++            L
Sbjct: 128 GIIDRVDVAPTGEVRIVDYKTGKAPRPQYAEGA---LFQMTFYALVVWRLKGVLPRRLQL 184

Query: 925 IYVSEPKVFIIPQNKLNKAFAEISTKI 951
           +Y+   +V     + +      +  K+
Sbjct: 185 VYLGSGEVR--SYDPVMADLERVERKL 209


>gi|312960989|ref|ZP_07775494.1| UvrD/REP helicase [Pseudomonas fluorescens WH6]
 gi|311284647|gb|EFQ63223.1| UvrD/REP helicase [Pseudomonas fluorescens WH6]
          Length = 815

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 76/254 (29%), Gaps = 19/254 (7%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKF---TPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           L      +  +   S L+             +  + +  +          ++    +   
Sbjct: 403 LIWLDSYESSKRLLSSLAGDATAGPGFDYKVKGELASAPLLDSFVMAAGFIENLGLDVPA 462

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSA 167
              + +  K                   E+   +    ++ +  +     +     +   
Sbjct: 463 AVGQMSFAKDDPD-RFFFEALSIFWRALEDHLLEQSPPIMTYNRMFSLFGE--NTPENLK 519

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV-----GKNTHSSPRTLFAVGDE 222
            +   + + ++H++IDE QD S      IR+   +             +   +L  VGD+
Sbjct: 520 LLSDPLLRPLSHLMIDEFQDVSPQIVSWIRASLREIRSRGPAMHVGRGAQRSSLLCVGDD 579

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            QSIY + G+ PK  +   +             + + L  ++RS   I+   + +     
Sbjct: 580 WQSIYGWRGSSPKYFMAFNKEFP------SPSTTRVMLGENYRSHQHIIDAAEHIVRAAP 633

Query: 283 NAQGLSEDSTTTIR 296
              G    ++   +
Sbjct: 634 AIPGKKAKASGAPK 647


>gi|330943472|gb|EGH45816.1| UvrD/REP helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 476

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 54/150 (36%), Gaps = 24/150 (16%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              +DF+D+I      + +    A           +I++DE QD +  + +++++L    
Sbjct: 59  KGEVDFDDMINRAIAYVDEPGFIAP--------WKYIVVDEFQDIAKSRAQLVQALRHKC 110

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                      +LF VGD+ QSIY F G++       K              ++ +L  +
Sbjct: 111 --------GASSLFCVGDDWQSIYRFAGSDITFTSDFKARF--------GSTAVSDLDKT 154

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTT 293
           +R  + I  V  +              S  
Sbjct: 155 YRFNSKIGEVASRFVMRNPRQLVKHIQSHA 184



 Score = 48.8 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 26/186 (13%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ--QFISRFGNEVIDVLDEFLNFTLRNE 540
                I E+       +P      I       Q    + R       ++DE +    +  
Sbjct: 156 RFNSKIGEVASRFVMRNPRQLVKHIQSHAIATQPTISLLRSSKSSAGIIDEVVERISQVA 215

Query: 541 Q--NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +  +S   L     +L         A        +  T+H +KG E+  V L+      F
Sbjct: 216 EPGSSIYFLARFGFDLPGQDALHALARRYPLLTFKGDTIHRSKGKEADYVVLLGLKKGQF 275

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                  +P  K  + +V  L+  +++ +  E  RL YV +TRA
Sbjct: 276 ----------------------GLPSEKVTHPLVDALLPKVEEFSHAEERRLFYVALTRA 313

Query: 659 SDQLII 664
             ++ +
Sbjct: 314 RHRVYL 319


>gi|302186226|ref|ZP_07262899.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae 642]
          Length = 830

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 96/336 (28%), Gaps = 37/336 (11%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +   + + + H++IDE QD S      +R+   +         + R     +
Sbjct: 521 TSPENLKHVSDPMLRPLAHLMIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTRVMLSDNFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ-VVSQHDSQCNPQQESWTSYFD 334
            +        G    ++  ++            +L    V+ + + +   +        D
Sbjct: 635 HIVRAAPAIPGKKARASGLLQ------------ELLPVKVLDRDEDELAERVAEHYHDGD 682

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           S+           R +  +  +I  D+      +R+             K          
Sbjct: 683 SILLLYRKGSEKARFSARLQALIDADSANGTQNRRIRTLT-----YHSSKGLQADAVFLL 737

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  +S   N  + L       DL           D      +L+      +     
Sbjct: 738 GDCQHLTVSPYKNQVYRLAGLGDASDL--------QPFDTAQKDEVLRLAYVAITRSARH 789

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                     +        A+  I++ +   + +  
Sbjct: 790 CYWYIDESASSADAVQMPKASDRIARDKPFFEDLRN 825



 Score = 38.0 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 88/308 (28%), Gaps = 41/308 (13%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  L A  R I  +   L    + +        DD   I   R  +  
Sbjct: 541 MIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 600

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL--------GAKKGRQQF 517
            +    +FA    S     +                +               A    Q+ 
Sbjct: 601 YF---MEFAKEFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIPGKKARASGLLQEL 657

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSAN 568
           +     +  +  DE       +  +  S L             + L+          + N
Sbjct: 658 LPVKVLDRDE--DELAERVAEHYHDGDSILLLYRKGSEKARFSARLQALIDADSANGTQN 715

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +R +T H++KGL++  VFL+     +    +  +++ +  L D              
Sbjct: 716 R-RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGD-------------- 760

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
               +  ++    + ++E  RL YV +TR++         + S+          D +   
Sbjct: 761 ----ASDLQPFDTAQKDEVLRLAYVAITRSARHCYWYIDESASSADAVQMPKASDRIARD 816

Query: 689 FHNDERVK 696
               E ++
Sbjct: 817 KPFFEDLR 824


>gi|299067241|emb|CBJ38438.1| putative helicase, C_term RecB family exonuclease [Ralstonia
           solanacearum CMR15]
          Length = 966

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/555 (10%), Positives = 137/555 (24%), Gaps = 90/555 (16%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
               ++    R L     + V     + L+   A   LM     +    D  + + +LKS
Sbjct: 329 AQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWIDVVQGDGDTAALLDLLKS 388

Query: 444 PLF---------------------------NFSEDDIFKICTQRHETETVYEYIQKFANC 476
           P                             +     + ++   R     V E        
Sbjct: 389 PFCLRDAEAPSSVAPAWVAELERRVRRRNVSGGWGRLRRLVAPRGTDTEVAEAADTGDGP 448

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
              +    +  + +   + +          +        +   R G +  D   + L++ 
Sbjct: 449 PAGRLAERLGLLADEAALWRRAGHATLEAWVTLLAGTLDRLRMRAGLQNDDAGRQLLDWL 508

Query: 537 LR--------NEQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            R         +  +  SLQE  + L                   V I+ ++ A+     
Sbjct: 509 DRLRVSVHGSADAGARFSLQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFD 568

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V +V            + +     +  + G+P                    +     E
Sbjct: 569 GVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPD------------RAQRFAQQARDLAE 616

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                         ++++    +    + +    W + +            + +      
Sbjct: 617 VLL--------NQPEVVLTWQRHGGRGEPNRLSGWLERLQRRLAAAGMRIDVPVVL---- 664

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
               A + +    +         +   +           P +  +     L         
Sbjct: 665 ---PALQTARQPTDMPAPAAPVLVPSTLSAAAYNSLRRCPYQFFVGRMLRL--------- 712

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPAK 819
              LE +  + +  + G ++H +L                 R   + +   +      A+
Sbjct: 713 -GELEEVSDELEKRDIGEVLHAILHRFHRQLLDTPMADPVDRFALLQTLTDERFAPLLAE 771

Query: 820 E--YKNLLLSITRLLEN-PMMTTAMSCDSYS----EVSVSGKINCPKKDII-ISGRIDQI 871
           +            ++ +      A   D +     EV     I       + + GRID+I
Sbjct: 772 DGHVLRFYRRWQGVMPSYLAWQAAREADGWRFEAGEVDAEASIALTGAPALHLRGRIDRI 831

Query: 872 SISQQ-NIFIFEYKT 885
               +  + + +YKT
Sbjct: 832 DTHPEHGVAVLDYKT 846


>gi|298385206|ref|ZP_06994765.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298262350|gb|EFI05215.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 472

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 74/533 (13%), Positives = 138/533 (25%), Gaps = 152/533 (28%)

Query: 152 LIINTNDLLKKR--DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           ++I    +L     D S   R  +     ++ +DE QDT + Q  +   L          
Sbjct: 49  ILIECIGILANYIFDNSKACRSYLKSRYKYLYVDEYQDTGIDQHYLFIKL---------- 98

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
            +    + AVGD  QSI+ F G +   + R ++          + F    L  + RS   
Sbjct: 99  KNMGIIMTAVGDVNQSIFEFSGKKSYYLKRIRQD---------KTFRSFILSQNHRSHQS 149

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+   +++         + E         S                              
Sbjct: 150 IVNYSNRLIDSTCTITDIPEKDRRVFYFISL----------------------------- 180

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                          +A  I   I++++            + +   I +L R  K+   I
Sbjct: 181 ----------GDEKHIASFIDEKIASIMNA--------YNIDKFNKIAILFRNSKNAQYI 222

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
           +   + L   +KI  V   +  +   +      ++ RFI +  +    +    S   +  
Sbjct: 223 S---QELNTPHKI--VSPTKLDMQISIWASIFASILRFIFNPTNRFIDIVETYSSFDSLR 277

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHV-IKYIHELIHIAQFCSPHDFFTLIL 508
                 +         +   +     C    F    I     L+  A   +  +    ++
Sbjct: 278 NTQKRSLQ---KSNIVLNGIVDHGEICNKDLFIETSINIATILMPEAHNINDINLLKEVV 334

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
              K    + S   NE                                            
Sbjct: 335 FDSKQLDSYRSEDSNE-------------------------------------------- 350

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              + +MT+H +KGLE   V   D        K ++  +    L                
Sbjct: 351 ---INLMTLHKSKGLEFDAVIHADLYEWGLPSKKVENNNFKEPLYP-------------- 393

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                           E+   L YVG+TRA    I+ +               
Sbjct: 394 --------------NWEQDLNLHYVGITRAKKVCILIRSEKRHKSNGELTNAQ 432


>gi|296283898|ref|ZP_06861896.1| helicase [Citromicrobium bathyomarinum JL354]
          Length = 977

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 76/662 (11%), Positives = 175/662 (26%), Gaps = 79/662 (11%)

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP--QQES 328
           LT  +   +   +A  L   ++ +     S   ++  VQL E    + ++Q      +  
Sbjct: 290 LTAANPDRTHAVSALFLPPQASKSWVELPSEKRRLAAVQLLETGNPEEEAQAVALAVRRK 349

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                  +   +    LARRI + +      D    +     +        +        
Sbjct: 350 LEEPQKRVAVVTPDRSLARRIVHHLRRW---DIQADDSAGAPLCDTAAGRALLLLAQVIA 406

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF 448
                  L        VG      +       L AL RF             L+ P    
Sbjct: 407 ERAAPVPLIAFLGHPFVGVAGAEDSGGARADWLDALRRFEDR----------LRGPRPAP 456

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF---T 505
               +  I  +                     +  V   +  L+   +     +      
Sbjct: 457 GLAPLRAIAAKADVDAW---------------WGTVADRLAPLMERDEDAPLAELLGTLA 501

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L    G   +    G  +   +D+                +      +       R  
Sbjct: 502 QVLEEFCGEAVWGREDGRALGSFVDDLRQQASA-AGTMIDPREVHDVLTDAMERVAVRPA 560

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              H  V +  +  ++   + ++         +         + P +    G+P    + 
Sbjct: 561 YGGHPRVAVYGLLESRMARADLIICAGLNEGTWPGGASPDPLLAPPVLRALGVPGGEFRI 620

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
               + ++  +   +            V +TRA             +       + + + 
Sbjct: 621 GLAAHDLAGALGAPQ------------VLLTRA-----------ALDANGPAIPSRFFLR 657

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             +   D   +  +       D     + +  +P   P    E  +  +    + +    
Sbjct: 658 IKALLGDLAKRHEESELPALVDALRDADPAPLYPVPQPCPPAEVRRVTISATALDRLRSD 717

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
           P +   N    L             + L S+     +G + H +L+              
Sbjct: 718 PYQFYANAILRLK----------ERDPLDSEPSPAWQGTLAHAILEEWHKQGGALVDLAT 767

Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
                 +A       ++  L++    +EN       S      V+V  K       + I+
Sbjct: 768 KHLGAMDAHPLTRALWEPRLMAALEWIENE----VSSDPDRRIVAVEQKGRHLFSGVEIT 823

Query: 866 G---RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD-SYPNKSLV 921
           G   RID+++    +  I +YKT     + +         QL     ++++ +Y ++ + 
Sbjct: 824 GTADRIDRLA--DGSYAIVDYKTGGPPSKRMVE--EGFALQLGTLGLLVEEGAYADRGIE 879

Query: 922 CL 923
            +
Sbjct: 880 GV 881


>gi|319440412|ref|ZP_07989568.1| RecB family exonuclease [Corynebacterium variabile DSM 44702]
          Length = 278

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 65/216 (30%), Gaps = 31/216 (14%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
                  P  L+PS +    +  L                   +G ++H +L+ +  LP 
Sbjct: 8   PAPAKRRPLALSPSRVGDYNQCPLLYRFRAIDRLPEPSTVAQVKGTLVHAVLEELHGLPR 67

Query: 799 HKR--KNFIT----SYCTKNAKLWPAKEYKNLLLSITRLLENPMMT---------TAMSC 843
            +R     +      +    AK     E       +  L+ +  +           A   
Sbjct: 68  EERTYPTAVKMLKPHWAAMTAKDPQLNELVPESDFMDFLIASRDLVKGYFLMENPEAFDA 127

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIA 902
           DS  E  V   +      + + G ID++ ++    + + +YKT               + 
Sbjct: 128 DSM-EKFVDLTLP---NGVPVRGFIDRVDVAPTGEVRVVDYKTGKKPIPRFAGQA---MF 180

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
           Q+  Y  +    Y +      L+Y+      ++   
Sbjct: 181 QMRFYALVWWRLYDHIPEQLRLMYLKVRDDMVLSPT 216


>gi|70730593|ref|YP_260334.1| ATP-dependent DNA helicase UvrD [Pseudomonas fluorescens Pf-5]
 gi|68344892|gb|AAY92498.1| ATP-dependent DNA helicase, UvrD/Rep family [Pseudomonas
           fluorescens Pf-5]
          Length = 744

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 80/277 (28%), Gaps = 28/277 (10%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L     ++     FS   +      +  +  + +  +          ++    E      
Sbjct: 333 LDSYEASKRSAGAFSAQVNGGPGFDYKVKGELASAPLLDCFVAAAGFIENLGLEVGDAVA 392

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVSAWIR 170
             +  +                   E+        ++ +  +    ++  +  +    + 
Sbjct: 393 GMSFAQDDPD-RFFFEALSLFWRALEDHLLDQSPPIMSYNRMFALFSE--RSPENFKLLS 449

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRS-LTEDFFVGK----NTHSSPRTLFAVGDEKQS 225
               + ++H++IDE QD S      IR+ L      G        +   +L  VGD+ QS
Sbjct: 450 DACLRPMSHLMIDEFQDVSPQIVSWIRASLAAIRSRGAALHIGRAAQHSSLLCVGDDWQS 509

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY + G+ PK  +   +             + + L  ++RS   ++   + +        
Sbjct: 510 IYGWRGSSPKYFIEFNKEFP------SPGTTRVMLSENYRSHQHVIDAAEHIVRAAPAIA 563

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           G                      +LW   V   D Q 
Sbjct: 564 GKKA------------KASGEATELWPVQVLDRDDQG 588


>gi|116621024|ref|YP_823180.1| ATP-dependent nuclease subunit B-like protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116224186|gb|ABJ82895.1| ATP-dependent nuclease subunit B-like protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 897

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 74/637 (11%), Positives = 173/637 (27%), Gaps = 73/637 (11%)

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                ++       +  +     + +    + + LA   A  I   +         +   
Sbjct: 209 LTLDEAELGEATLARLGALDFSEEQVRGTRTRNALALIKAPGIEREVEEIARRILRQVEG 268

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
              ++I V+VR      +   + R   + + I         L  H  I+ L      +L 
Sbjct: 269 RPFREIGVIVRA---PEIYAPILRATLDRFGIPARFYFDEKLERHPVIRFLAGAMDAMLG 325

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE---------TVYEYIQKFANCGISKF 481
             +  + + +L+          + +      E           ++             + 
Sbjct: 326 GWEHGATLAVLRLAPRFADFGVMDRFDFDVRERIPRSGLGELRSLLIDEDGQPRPYAERL 385

Query: 482 QHVIKYIHELIH-IAQFCSPHDFFTLIL------------GAKKGRQQFISRFGNEVIDV 528
            H I  +  L    A   +P D+                            R    V+D+
Sbjct: 386 LHKIDSLAALEEWRALELAPRDWAARFATLREIFKPARPADEITHELALQYRSQAAVLDL 445

Query: 529 LDEFLNFTLRNEQ--NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            DE L+   +               +          R      N V +M+ H A+    P
Sbjct: 446 FDEALDEAAQALHGIRHLPLEDYWRAVKSILRLKPLRLEDGRRNVVHVMSAHEARQWVLP 505

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           VVF+     + F   H +      +                     S +        + E
Sbjct: 506 VVFVCGMVEKQFPKFHQQDPFFGDAARCRLNG--------------SGIRVRTAAEFERE 551

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              L    +TRA+    +         +++    + + +                  +  
Sbjct: 552 ERMLFDAAITRATMLATLSYPEFDGRGERNLPSIYLEDL-----------------DLPA 594

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-NPSTIDTK 765
           ++ +A   +           E    QL++  +      SP   +          +    +
Sbjct: 595 EDAVAVRPAPRARTGDSAPVEIRNAQLLEYMRHRTAQLSPTALETFLQCPFQYFTQRFLR 654

Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK--LWPAKEYKN 823
            KT  +          +G ++H +L   +  P+     F   +  +  +  + P    + 
Sbjct: 655 LKTAPDRPEQRLDFLTQGNVVHAVLAEWWLEPQDLAALFERVFAAQLKEKCIPPGYHTER 714

Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP-----KKDIIISGRIDQISISQQNI 878
           L  ++        +    S D + +++   +I           + I+GRID++  +    
Sbjct: 715 LRNAMLD-----DLRRFTSEDPWPKIAFRSQIETKFCFPLDDTVEINGRIDRLDTAPDGR 769

Query: 879 F-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
             + +YK      +  + +    + Q  +Y    +  
Sbjct: 770 TFVIDYKYSA-AQRVKDKLKDASLLQAPLYMLAAQHL 805


>gi|319952836|ref|YP_004164103.1| hypothetical protein Celal_1290 [Cellulophaga algicola DSM 14237]
 gi|319421496|gb|ADV48605.1| hypothetical protein Celal_1290 [Cellulophaga algicola DSM 14237]
          Length = 918

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 80/665 (12%), Positives = 181/665 (27%), Gaps = 101/665 (15%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A+ +   +  +  +           I   D  +L         I      +      
Sbjct: 287 VSQAKYVGNLLEKIHDSQPALLKQT--AIVLGDENLL---NPILNAIPEKIERINITMGY 341

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            +      +L +      L        +       + +L  P                  
Sbjct: 342 PIHKTPLAVLFNLYFELWLTKE----SNGWFYQHLLNLLAHPYIQIYLQTDKTNNASAIA 397

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-QQFISRF 521
            +             +++    +K +  ++      +P +F    L       Q+F    
Sbjct: 398 NKIKTRNWIFVKTKQLAQAAPELKELTTILFNDTALTPKNFIRRSLAIIAVLKQKFQDSG 457

Query: 522 GNEVIDVLDEFLNFTLRNEQ--------NSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            +  ++ L  F     + E             SLQ L  EL                  +
Sbjct: 458 SHLELEYLYRFHTLFNQLELMVNEHSFITDIKSLQSLYKEL--IGTETLDFQGEPLQGTQ 515

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           IM +  ++ L+   V +      +          I   L    G+P +      ++ + +
Sbjct: 516 IMGMLESRNLDFETVIITSVNEGILPSGKSNNSFIPFDLKKIYGLPTYK----EKDAVYT 571

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                             Y  + RA +  I+                    V +      
Sbjct: 572 YH---------------FYRLLQRAKNVYIV--------------YNTEPHVLEGNEKSR 602

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK-IPKKLFSPIKNDIN 752
            +K++   ++++++       +     N PLER E    L+++ K + +K FSP      
Sbjct: 603 LIKQLLTDDNLSENIKEITGSAAVVSANIPLERIEKSADLIEQLKVLSEKGFSPTSLSNY 662

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYC- 809
               ++          ++  +         G I+H  L+ +    +  +  K  + +   
Sbjct: 663 VRNPIDFYKKSILRINDINEVEESLAANTFGTIVHDTLEDLYQPFVGAYLVKESLENLLP 722

Query: 810 -------TKNAKLWPAKEYKN---------LLLSITRLLENPMMTTAMSCDSYS---EV- 849
                     AK +   +            +L  I   ++   +             E  
Sbjct: 723 KIEGTVQHNFAKTYADGDITRGKNLIAYTVILRYIENFIKLE-LKEIQQHKIKIISLEQM 781

Query: 850 -SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE-----IEHIPYTH--- 900
            +V  +I      I + G++D++        I +YKT     +         +   +   
Sbjct: 782 LNVELEIPGISHKIRLRGKLDRVDEIDGATRIIDYKTGKVESRNVKITAWNDLIENYDKS 841

Query: 901 -IAQLSIYEKILKDSYPNKSLVCLLI----------YVSEPKVFIIPQNKLNK---AFAE 946
              QL  Y  ++    P +++   +I          Y SE +   I ++ L +       
Sbjct: 842 KAFQLLCYAIMIDKVKPIETIKAGIISFKNLNSGTLYFSEKRTEEINKSTLLEFKNVLDT 901

Query: 947 ISTKI 951
           +  +I
Sbjct: 902 LIQEI 906


>gi|256844123|ref|ZP_05549610.1| excision endonuclease subunit UvrD [Lactobacillus crispatus
           125-2-CHN]
 gi|256614028|gb|EEU19230.1| excision endonuclease subunit UvrD [Lactobacillus crispatus
           125-2-CHN]
          Length = 620

 Score = 86.1 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 68/463 (14%), Positives = 152/463 (32%), Gaps = 90/463 (19%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           ++   L FE +      +++      ++R+ I      + +DE QDT+++Q+++ R    
Sbjct: 174 EEKTYLTFEMISRLALYIIQHN---KYVRHIIRSAFPFVFLDEFQDTTVLQYDIFRECFL 230

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +             + AVGD KQ I  + GA+ + + +  R  +          + + L 
Sbjct: 231 NSES---------KITAVGDNKQQIMLWAGADKEILGKYTREFR---------ATKVFLK 272

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            + RS  +I+ +           + + +D    I    ++    G V L E      +++
Sbjct: 273 ENHRSALNIVKL------QKLMYEKIDKDINPDIIINKNKDE--GKVFLIETNEPSKEAE 324

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              +                       I   I                 ++  +I +LV+
Sbjct: 325 IVGEN----------------------IIKEIR--------------MGVKPSEIAILVK 348

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
           +R +        +       ++V    ++  T    I  L  + + IL      + + ++
Sbjct: 349 QRPE--DYIRNIKEYLKTKNVTVRVESKYTETFSEPIVKL--ILKMIL------ASINVI 398

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI-HELIHIAQFCSP 500
                     +  ++  +  E   +     +     I K    +  +   L+        
Sbjct: 399 NG-------QEWQELVDETSEIFLINLADAEIEQKYIKKLNVFLDKLFKNLLVQVHENRS 451

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL--ISELEQYP 558
              +   +         I+R      + L+  ++   R +      L+E   I+EL    
Sbjct: 452 KSNYYCKIVESIIDFFTINRLQVYYPEYLE--IDQLNRTKTQFIEQLKECGSINELNTDI 509

Query: 559 PTIKRAHSAN---HNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             I +    N    N +  +T+H +KGLE   V+ +      F
Sbjct: 510 KEIWKEIIDNYLGKNSIATLTIHKSKGLEYNSVYFIGLEDSAF 552


>gi|332185717|ref|ZP_08387464.1| double-strand break repair protein AddB [Sphingomonas sp. S17]
 gi|332014075|gb|EGI56133.1| double-strand break repair protein AddB [Sphingomonas sp. S17]
          Length = 984

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/475 (11%), Positives = 116/475 (24%), Gaps = 48/475 (10%)

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
            S    L+ P      D I      R      +  +          F    + +  L+  
Sbjct: 452 RSLDRGLRGPRPAPGLDGIAAHIADRPTAAGFWAKVAPMLQPVGRTFGDGAQTLRGLLAC 511

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
            + C        +     GR       G E                +   + L  L+  L
Sbjct: 512 LRECGQALCGDALWTGPAGRAAAEFLSGYEEQAD--------HGPVRIDPADLPGLMRSL 563

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                         H  + I     A+   + ++        V+  +      + P +  
Sbjct: 564 LDEIAVRAIPREGQHPRLAIYGPIEARLQTADLMIAAGLNEGVWPGRPAPDPWLAPRIRA 623

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G+     +     + ++  +   +              +TRA             +  
Sbjct: 624 QLGLVGLEQRIGIAAHDLAQAMGAPRA------------ILTRARR-----------DAS 660

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                + + +   +   +       L     + +          P   P  R      ++
Sbjct: 661 GPTLASRFWLRLQAMAGERFEGHPTLAAWAERLDRPDAYTPVDRPAPKPPARLR--PTVI 718

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
              ++ +    P          L P          L+ + +D     RG  +H +L+  +
Sbjct: 719 SVTEVDRLKADPYAFYARRVLRLTP----------LDPVDADPSAAWRGTAVHDILEAWW 768

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL-SITRLLENPMMTTAMSCDSYSEV-SVS 852
                  +                   + L    +   ++      A        V S  
Sbjct: 769 KEDACAVEALRPRALAMLRDQRTHPMMRALWQPRLIEAIDWIAAEVAAKAAEGRHVLSAE 828

Query: 853 GKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           GK       + ++GR D+I  +    + + +YKT          +      QL +
Sbjct: 829 GKGEAKLAGVTLTGRFDRIDRTPDGGLVVIDYKTGKPP--SAVAVREGFSLQLGL 881


>gi|188585468|ref|YP_001917013.1| ATP-dependent nuclease subunit B-like protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350155|gb|ACB84425.1| ATP-dependent nuclease subunit B-like protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 1048

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 79/759 (10%), Positives = 199/759 (26%), Gaps = 151/759 (19%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG----TDTIFSNGK 367
           + V S  D   +   E   +  D+   +       R+I +     I     +       +
Sbjct: 199 QLVDSLPDDSLHIIDELTDALNDAHEGDDQIDTWKRKITFNTKEQIDLFSASGESVEVKQ 258

Query: 368 KRVIQAKDILVLVRK---RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                    L   R       +   + L   L   Y+I V   +  ++ +    K L  L
Sbjct: 259 VFSWIRDGCLPFDRTIILYSSSSPYSELIYKLSEKYQIPVTFGEGIMIQNTKPGKLLFLL 318

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             +I S         +L   L    E  +     ++   E    + +      + K    
Sbjct: 319 LEWINSGYRVTDLNKILDENLLYIGEGTLSGYKIRKLLREASIGWSRNRYFHRLEKVISE 378

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF---------------------ISRFGN 523
           ++ + EL   A   + H     +LG  +   +                      ++    
Sbjct: 379 LENLEELDDNAIDDNDHSRHQRLLGEYRALYRIINDIFTCLDYQTDEQDPEIISLASLSG 438

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-------------TIKRAHSANHN 570
            +   +DEF   T + ++ +   +++ +  + Q                           
Sbjct: 439 CIARFIDEFGQVTSQFDKEAQQRIRDELELISQISKSYLEIDQAIERLKESIENIRVGQE 498

Query: 571 EVRIMTVHTAKGLE-----SPVVFLVDTGSQVFSHKHIKKMHIMPSL------------- 612
             +   +H              V+L+   +  F     +   ++                
Sbjct: 499 LPQAGHIHVDHYQNGWWMLRDNVYLIGFDADRFPGNRQEDPILLDEERKQISDWLPLGQD 558

Query: 613 --NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
              ++  + + + +  +      +      +  +  +   ++         +I     +T
Sbjct: 559 RPKENYQLVLDMLKGIADMTGHMENGHTENRHRENGHRENVHNVHKEKGQMVISYSSFDT 618

Query: 671 SNEKKSNQRT---------------WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           +  K+    +                Y  + +     E +   + +  +++ +W    + 
Sbjct: 619 TEHKEKFPSSLLLQVYRQISGDSDADYTTLQNYLMPPEGMIPKRQSEVMDEIDWWLANYV 678

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI-----------------NEPYILN 758
            +      L+    +    D QK  +   + +  +                       ++
Sbjct: 679 EYVENGQHLQLNHIVYCYPDLQKGVEAFQNRLSPEFTVYDGNVSADRTAIDPRERAKPIS 738

Query: 759 PSTIDTKGKTN------------LESLLSDNQT-----FNRGLIIHKLLQVI-------- 793
           P+ ++  G+                  +  +         RG ++H + +          
Sbjct: 739 PTRLELLGRCPYGYFLNQVLGIEPPEDIEFDPGKWLDSLTRGSLLHTIFEQFYRELTLNQ 798

Query: 794 ----FTLPEHKRKNFITSYCTKNAKLWPAK-------EYKNLLLSITRLLENPMMTTAMS 842
                                +  +  P         E  +LL S    L +        
Sbjct: 799 EKPQEHKHSEYLTEMAEELIDQQLEELPPPSDLVYQYEKDDLLNSALVFLRSE--QEYFE 856

Query: 843 CDS--YSEVSV-----------SGKINCPKKDII-ISGRIDQISISQQN-IFIFEYKTHH 887
                Y E+                +  P    + +SG+ID++ + Q      ++YKT  
Sbjct: 857 SSRPIYFELYFGRSGDEQEHQDMVPVELPSGKRLYLSGKIDRVDLDQDGNYLAYDYKTGS 916

Query: 888 HVP-QEIEHIPYTHIAQLSIYEKILKDS----YPNKSLV 921
                E E+       Q ++Y   L+      YP+ ++ 
Sbjct: 917 TYGYSESEYYKGGRQLQHALYALALEQILQENYPHNNIK 955


>gi|330504444|ref|YP_004381313.1| UvrD/REP helicase [Pseudomonas mendocina NK-01]
 gi|328918730|gb|AEB59561.1| UvrD/REP helicase [Pseudomonas mendocina NK-01]
          Length = 637

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 93/313 (29%), Gaps = 18/313 (5%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
             ++  +         P  Q   + K    +    +         L +    +   +  +
Sbjct: 208 DPSDEPDNPLAGTRLRPAQQR--LLKQAYQNAYADDARFRALTHRLLKLPAPEEPPQGKA 265

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                           +   E+     D  E L    D                     +
Sbjct: 266 KAPLDACKLPGEF-AALPLFELLHGQIDFAESLGIRLDRLD-----MKALGCAPRERDFI 319

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
              +  + H+        ++ F       ++ L      +         ++H+LIDE QD
Sbjct: 320 EAMQRFHQHFNALLHNQGLISFNGAFAQLSERLSSDGGKSGPALL---ALSHLLIDEFQD 376

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            S      ++++           S   +L A+GD+ QSIY + G+ P+  +   R    R
Sbjct: 377 ISPQIVLWLQAVHRRLHAA----SERISLMAIGDDWQSIYGWRGSSPELFIDFDRHFPSR 432

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 K + + L  ++RS   ++   ++V +   N Q  +  +   ++     +  +  
Sbjct: 433 GRG---KSTTLLLGTNYRSIEPVIRDGERVLAEVHNKQAKTCIAAKAMQPGDHGVRLIQR 489

Query: 308 VQLWEQVVSQHDS 320
             L   + +    
Sbjct: 490 FDLASGLPALLKE 502


>gi|296129851|ref|YP_003637101.1| RecB family exonuclease-like protein [Cellulomonas flavigena DSM
           20109]
 gi|296021666|gb|ADG74902.1| RecB family exonuclease-like protein [Cellulomonas flavigena DSM
           20109]
          Length = 284

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 65/225 (28%), Gaps = 30/225 (13%)

Query: 750 DINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHK- 800
                  L+PS  +   +  L              +    RG ++H +L+ +F LP  + 
Sbjct: 9   PAPRMPGLSPSRANDFLQCPLLFRYRVVDRLPEPASPAAARGTLVHAVLEHLFDLPAPER 68

Query: 801 -----RKNFITSYCTKNAKLW-------PAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
                R      +     +            E    L    RLL      T         
Sbjct: 69  TLDAARAALPERWAQVQQEDPRCLDLHADDAERAAFLAEAERLLTT--WFTLEDPTRLEP 126

Query: 849 VSVSGKINCPKKDI-IISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            +   ++    +D   + G +D++ ++      + +YKT        E      + Q+  
Sbjct: 127 RARELRVEHDLEDGPRLRGVVDRVDVAPNGWVRVVDYKTGRSPRAGFESSA---LFQMRF 183

Query: 907 YEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           Y  ++  +         L Y+ +    ++           +  ++
Sbjct: 184 YAYVVWRTRGVLPKRLQLTYLGDG--VVVSHEPTEAEMHTLEARV 226


>gi|240849706|ref|YP_002971094.1| double-strand break repair protein AddB [Bartonella grahamii
           as4aup]
 gi|240266829|gb|ACS50417.1| double-strand break repair protein AddB [Bartonella grahamii
           as4aup]
          Length = 1039

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 80/686 (11%), Positives = 173/686 (25%), Gaps = 92/686 (13%)

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              + VFS P+             RH    IGQ    +     +     +     + W  
Sbjct: 288 DPAENVFSHPQYHLKKLLTLMECQRHHVCEIGQQSITKKRRMAILSEALRPASTTDKWIQ 347

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
                 ++   ++ A      I  +   +   +         ++         +   +  
Sbjct: 348 IV----RDDYENLCADW--SFIEAINEREEALAIAVTLRKAIEEPQKTAALITNDRNLAR 401

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF----- 446
                   + I    +    L   L +  L  +   +L  +D ++F+ +LK PL      
Sbjct: 402 RVAVELQRFGIEANDSSGIPLAQTLPVTLLRLILENVLQPDDPIAFLSLLKHPLTTLQQN 461

Query: 447 -----------------------------NFSEDDIFKICTQRHETETVYEYIQKFANCG 477
                                         F E  I        E   + +   + A   
Sbjct: 462 RHRLREMAENFELFILRGNTGRINLCECDQFLEKWIETHFHNSSEINALDQQKCEEARFL 521

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFF---TLILGAKKGRQQ--FISRFGNEVIDVLDEF 532
               +  ++ +  L+   + C+  +       +       +       + +E    L +F
Sbjct: 522 CHLLRKAVEPLTSLMKKEKECTITEAAIATVEVFENFGRNEDNSLAHLYQHEAGQALSKF 581

Query: 533 LNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           L   + ++      L E  +                 H  + I     ++      V + 
Sbjct: 582 LRELVSDQSGLTFHLCEWPAMFSAIIATRSVTPSPGGHPRLFIWGTLESRLQTVDTVVIG 641

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                 +         +              P          +    L     +    + 
Sbjct: 642 GLNEGSWPISTRNDAFLS------------RPMKMMLTLEPPEQRIGLSAHDFQWAMGMD 689

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            V M+RA                          +   +         K      ++    
Sbjct: 690 KVVMSRALRV------------------NHTPSIPSRWLQRMETAVGKQVWKKIRERGEI 731

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
                   ++T +  E           I  + FS  + +                   L+
Sbjct: 732 LRHWAKMLDHTSITSEVERPCPAPPLDIRPRHFSVTEIETLRYDPYAIYAKKILRLKPLK 791

Query: 772 SLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT- 829
            L+ D     RG + H +L      +      N +    +   K +    +   +  I  
Sbjct: 792 ELIHDPSASERGTLYHAILAAFCTQIKNPNAANALNVLLSIGRKEFDKFNFPPDIEVIWW 851

Query: 830 --------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFI 880
                   RL++     +    + YSEV VS KI      + +SGR D++ +     + I
Sbjct: 852 NSFENLAPRLIQWE--QSLGLRERYSEV-VSQKIPIGTTGVTLSGRADRLDVLPDKTVEI 908

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSI 906
            ++KT        + +      QL++
Sbjct: 909 LDFKTGTPPSS--KQVRELLFPQLAL 932


>gi|154508756|ref|ZP_02044398.1| hypothetical protein ACTODO_01265 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798390|gb|EDN80810.1| hypothetical protein ACTODO_01265 [Actinomyces odontolyticus ATCC
           17982]
          Length = 284

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 29/218 (13%)

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLL--------SDNQTFNRGLIIHKLLQVIF 794
           L +P   +      L+ S      +  L+  L         + +    G I+H +L+ +F
Sbjct: 4   LITPSTAERTWEPALSASRAKEYERCPLQYRLHVLDGYREPETRAKALGTIVHAVLEKLF 63

Query: 795 TLPEHKR-------------KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            LP  +R             +   +      A      +    L     ++         
Sbjct: 64  ALPAQQRTPEAARGQVWPQYEALASKNPEVPALFSDDADRDAWLDEARAVVN--GYFAIE 121

Query: 842 SCDSYSEVSVSGKI-NCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYT 899
                +  ++  ++       + + G ID++  +    + + +YKT              
Sbjct: 122 QPQWIAPAALEQRVTTMTSGGVRLLGFIDRVDRAPDGRLRVVDYKTGKAPGP---RYVDE 178

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
            + QL  Y  +L            L+Y+   +V     
Sbjct: 179 ALYQLRFYALLLAR-TQVLPSRMQLVYLKAGQVITFDP 215


>gi|118387235|ref|XP_001026729.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89308496|gb|EAS06484.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1021

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/510 (10%), Positives = 132/510 (25%), Gaps = 73/510 (14%)

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
              +L K       I+Y +D    +   DE QD + +Q++++    +             
Sbjct: 136 YCYELFKFLQTRDGIKYVLD-RYKYFFFDEFQDVNQLQYDILMLFKKH----------GC 184

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            L  +GD+ Q+IY +  +    +      + K+    G       L  ++R +  I    
Sbjct: 185 FLVVIGDDAQNIYGWRDSRIDIIQTRIDEDIKKF--QGAHIKTYMLSTNYRCSKPITLFS 242

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + + +  +N    S             + + G ++L   +          ++        
Sbjct: 243 NSIIATSKNLIQKSMRYL---------VKEEGVIELKPYLQCFKGLYNQNEEIISQIKTI 293

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                                    +       ++     + + ++              
Sbjct: 294 LCSTNQPLKFF--------------EEALEKHNEKSSLKLNYMSMIGNNSSIYGGKTNQS 339

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS----E 450
            L    +I++    R    +   +  +           D+      L+ P  + +     
Sbjct: 340 ELLKQDRITLSTIHRAKGLEWKVVFFIGV--------NDEFFPNNFLRDPSNSLTRLEEC 391

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             +F +   R   E  +  ++      + +F   I                + +   +  
Sbjct: 392 RRLFYVGATRAINELYFAMVKNNKCHKVCRFFSGIN--------------AELYERDIDI 437

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                        +  +     +  T   EQ  +  L E    L+       R      N
Sbjct: 438 TDNDMIVEEENIKKDFERD---VQVTKIIEQMDHKDLSEADQFLQNVEELEIRQIHPKSN 494

Query: 571 ----EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK----KMHIMPSLNDDPGIPIWI 622
               E+R   +    GL   ++       Q+ +         ++ +              
Sbjct: 495 LNESEIRNNNLFVDLGLYIDLLIQRTLAEQLNAENGYSYEYAQIVLFSIFWRSDKAEFIS 554

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
             S   NN + D      +    E   L Y
Sbjct: 555 KYSTFFNNKMLDFSDIEDEEDFIEAFNLFY 584


>gi|325926378|ref|ZP_08187705.1| hypothetical protein XPE_1676 [Xanthomonas perforans 91-118]
 gi|325543232|gb|EGD14668.1| hypothetical protein XPE_1676 [Xanthomonas perforans 91-118]
          Length = 510

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/349 (10%), Positives = 85/349 (24%), Gaps = 57/349 (16%)

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
             ++   +   S      K+  + E  RLLYVG+TRA   L I       +E+ +     
Sbjct: 11  HWKTDKDDPSWSAAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGPFHQHERTALSAML 70

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             +        E    +  +        +        P    ++R    +  +       
Sbjct: 71  RALDALQGAAGEGTVVVDTSTPPAHLPRLPAPSEAQVPPARSVQRHIAPEWWVYSFTQLA 130

Query: 742 KLFSPIKNDINEPYILNPS----------TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
              +    D      +  S           +     ++ E           G+++H + +
Sbjct: 131 NADAGAATDPMASATVVGSGGSDEPSGSEAVAVAVASDAEPFDPRFAGNRFGVVMHDVFE 190

Query: 792 VIFTLP--------EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-------- 835
                                           +   +  + L  +T L+ +         
Sbjct: 191 RCDFAAWQAWRPGQPAPDGQAAPILQALQRGGYAQDDLDDGLRMLTALIGHTLTVALPEG 250

Query: 836 -MMTTAMSCDSYSEVSVS---------------GKINCPKKDI----------IISGRID 869
             +         +E+                   +                  +++G ID
Sbjct: 251 TRLADVPEPQRRNEMEFHFAMRPTRVDALLALLHRFGVVGDRQAFGARQRLEGLMTGLID 310

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYT-----HIAQLSIYEKILKD 913
                    ++ +YK++     + + +        +  Q  IY   L  
Sbjct: 311 LTYSVDGRWYVLDYKSNRLPSYDADALARAMAHSEYELQALIYTVALHR 359


>gi|227495237|ref|ZP_03925553.1| RecB family exonuclease [Actinomyces coleocanis DSM 15436]
 gi|226831689|gb|EEH64072.1| RecB family exonuclease [Actinomyces coleocanis DSM 15436]
          Length = 281

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 63/214 (29%), Gaps = 28/214 (13%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN--------RGLIIHKLLQVIFT--- 795
            ++       L+ ++  T  +  L+  L     F         RG ++H +L+ I+    
Sbjct: 2   SESQATRRKALSATSTSTWKQCQLKFRLIYLDGFREPPNPVTTRGTLVHAVLEHIYDYQA 61

Query: 796 ----------LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
                     L   + +          A           L  +  L+E+       +   
Sbjct: 62  GMRNLETAKSLTAAQYQEMFAKDPEFQAMFTEESALNQWLAEVNSLVES--YFQMENPQR 119

Query: 846 YSEVSVSGKINCP-KKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQ 903
               +    ++      I I G ID+I  +      I +YKT      +          Q
Sbjct: 120 LEPYARELLVDAETSSGIAIRGFIDRIDKAPNGAIRIVDYKTGKSPRPQYMEDKLH---Q 176

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
           +  Y  +++ +         L+++ + K      
Sbjct: 177 MRFYSLLMRQAGRGVPARTQLVFLGDGKTLTFDP 210


>gi|251764594|sp|Q897P5|ADDB_CLOTE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
          Length = 1150

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 91/785 (11%), Positives = 206/785 (26%), Gaps = 172/785 (21%)

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           IL  V                      +R     ++  ++           +   +    
Sbjct: 258 ILEFV----KRNNIKYEKPIKLNCDPCYRFKNSKELSHMEKNLFAFPYKIHEKYTEDICV 313

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
               +   +       AR I   + +                + KDI V+     D    
Sbjct: 314 FQALNEYSEIEYT---ARDIIKLVRD-------------NGFRYKDIAVIT---GDLEGY 354

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
             L + +  +Y I    + +    ++  +  +++    +    +  S    LK+ L +  
Sbjct: 355 QSLIKAVFTEYGIPYFIDKKVEGDNNPLVIFILSSLEVLNKNWNYESVFRYLKAGLVDIK 414

Query: 450 EDDIFKICTQ---------RHETETVYEY----------------------IQKFANCGI 478
            ++I  I            R   E  ++Y                      I +      
Sbjct: 415 REEIDIIENYVLANGIRGKRWIEEKDWDYKILYGFNLTEEKEEEEEEKLKKINEIRRKIT 474

Query: 479 SKFQHVIKYIH-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE------ 531
                    I  E+         ++F   +  + K             +D ++E      
Sbjct: 475 EPLIEFHNNIKGEITPKKMCLELYNFLEKMNISSKIESWIKYFKERNRLDKINEYKQIWD 534

Query: 532 --------FLNFTLRNEQNSYSSLQE-LISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
                    +      E+ +  +L+    S  EQY   I      + ++V + +    + 
Sbjct: 535 VAIGLMEQLVEVMKE-EKLNSRTLENIFKSGFEQYELGIIPP---SLDQVLVSSTKRLRS 590

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            E   +++V T   VF             + D+ GI   + +   R   +         +
Sbjct: 591 HEIKALYIVGTNDGVFPS-----------VLDENGILSDLERENLRETGLEVAKDTKSTA 639

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
              E   L+YV +T  SD L I         K          +   F N      +    
Sbjct: 640 --FEEQFLMYVTLTTMSDYLRISYPIANEEGKTLRPSIVISRLRKIFPNLCEKSNVIKE- 696

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------------------- 743
             + ++  + + + +   +    +EE ++       +                       
Sbjct: 697 EGDIEKISSPKPTFNEFISQLRVKEEGLELSSIWLSVYDWFMNNKEWKEKFINISQGFNH 756

Query: 744 --------FSPIKNDINEPYILNPSTIDTKGKTNLESLLS-DNQTFNR----------GL 784
                      ++        ++ S ++   +      +        R          G 
Sbjct: 757 TNYAEIVDTRRVRKLYGSKLNMSVSRLEKFSQCPFAYFIRYGMNAKERKIYKVSTPDIGT 816

Query: 785 IIHKLLQVIFTLPE---HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA- 840
           ++H +++      E      +      C         ++ K++  SI     +P      
Sbjct: 817 LMHDVVESFSRHIEGKNISWEEIDRELCESFVSTMVDEKIKDMKGSILN--SSPRYKHMT 874

Query: 841 ----------------------MSCDSYSEVS--VSGKINC------PKKDIIISGRIDQ 870
                                     +Y E++   +G            + + + GRID+
Sbjct: 875 NRIKDILSKSMEVISQQISRGDFKPSAY-ELAFGFNGDFPPISIELSSGEKVNLIGRIDR 933

Query: 871 ISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI-LKDS--YPNKSLV-C 922
           +   +      I I +YK+       +  I Y    QL +Y    L++      K +   
Sbjct: 934 VDKLENEDGTFIRIIDYKSGKQ-DFNLSDIYYGLQIQLLVYLDALLQEIEDSAKKEVNPA 992

Query: 923 LLIYV 927
            ++Y 
Sbjct: 993 GILYF 997


>gi|28210410|ref|NP_781354.1| ATP-dependent nuclease subunit B [Clostridium tetani E88]
 gi|28202847|gb|AAO35291.1| ATP-dependent nuclease subunit B [Clostridium tetani E88]
          Length = 1157

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 91/785 (11%), Positives = 206/785 (26%), Gaps = 172/785 (21%)

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            IL  V                      +R     ++  ++           +   +    
Sbjct: 265  ILEFV----KRNNIKYEKPIKLNCDPCYRFKNSKELSHMEKNLFAFPYKIHEKYTEDICV 320

Query: 330  TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                +   +       AR I   + +                + KDI V+     D    
Sbjct: 321  FQALNEYSEIEYT---ARDIIKLVRD-------------NGFRYKDIAVIT---GDLEGY 361

Query: 390  TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
              L + +  +Y I    + +    ++  +  +++    +    +  S    LK+ L +  
Sbjct: 362  QSLIKAVFTEYGIPYFIDKKVEGDNNPLVIFILSSLEVLNKNWNYESVFRYLKAGLVDIK 421

Query: 450  EDDIFKICTQ---------RHETETVYEY----------------------IQKFANCGI 478
             ++I  I            R   E  ++Y                      I +      
Sbjct: 422  REEIDIIENYVLANGIRGKRWIEEKDWDYKILYGFNLTEEKEEEEEEKLKKINEIRRKIT 481

Query: 479  SKFQHVIKYIH-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE------ 531
                     I  E+         ++F   +  + K             +D ++E      
Sbjct: 482  EPLIEFHNNIKGEITPKKMCLELYNFLEKMNISSKIESWIKYFKERNRLDKINEYKQIWD 541

Query: 532  --------FLNFTLRNEQNSYSSLQE-LISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
                     +      E+ +  +L+    S  EQY   I      + ++V + +    + 
Sbjct: 542  VAIGLMEQLVEVMKE-EKLNSRTLENIFKSGFEQYELGIIPP---SLDQVLVSSTKRLRS 597

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
             E   +++V T   VF             + D+ GI   + +   R   +         +
Sbjct: 598  HEIKALYIVGTNDGVFPS-----------VLDENGILSDLERENLRETGLEVAKDTKSTA 646

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
               E   L+YV +T  SD L I         K          +   F N      +    
Sbjct: 647  --FEEQFLMYVTLTTMSDYLRISYPIANEEGKTLRPSIVISRLRKIFPNLCEKSNVIKE- 703

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------------------- 743
              + ++  + + + +   +    +EE ++       +                       
Sbjct: 704  EGDIEKISSPKPTFNEFISQLRVKEEGLELSSIWLSVYDWFMNNKEWKEKFINISQGFNH 763

Query: 744  --------FSPIKNDINEPYILNPSTIDTKGKTNLESLLS-DNQTFNR----------GL 784
                       ++        ++ S ++   +      +        R          G 
Sbjct: 764  TNYAEIVDTRRVRKLYGSKLNMSVSRLEKFSQCPFAYFIRYGMNAKERKIYKVSTPDIGT 823

Query: 785  IIHKLLQVIFTLPE---HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA- 840
            ++H +++      E      +      C         ++ K++  SI     +P      
Sbjct: 824  LMHDVVESFSRHIEGKNISWEEIDRELCESFVSTMVDEKIKDMKGSILN--SSPRYKHMT 881

Query: 841  ----------------------MSCDSYSEVS--VSGKINC------PKKDIIISGRIDQ 870
                                      +Y E++   +G            + + + GRID+
Sbjct: 882  NRIKDILSKSMEVISQQISRGDFKPSAY-ELAFGFNGDFPPISIELSSGEKVNLIGRIDR 940

Query: 871  ISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI-LKDS--YPNKSLV-C 922
            +   +      I I +YK+       +  I Y    QL +Y    L++      K +   
Sbjct: 941  VDKLENEDGTFIRIIDYKSGKQ-DFNLSDIYYGLQIQLLVYLDALLQEIEDSAKKEVNPA 999

Query: 923  LLIYV 927
             ++Y 
Sbjct: 1000 GILYF 1004


>gi|313683464|ref|YP_004061202.1| hypothetical protein Sulku_2342 [Sulfuricurvum kujiense DSM 16994]
 gi|313156324|gb|ADR35002.1| hypothetical protein Sulku_2342 [Sulfuricurvum kujiense DSM 16994]
          Length = 780

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/398 (12%), Positives = 111/398 (27%), Gaps = 60/398 (15%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 ++ +M +   +G+    V +VD       HK  K + +     +  G+P    +
Sbjct: 400 DDVRGGKITVMGLLETRGVAFEGVVIVDFNEGYVPHKSEKDLFLNTKTREYAGLPSAHDR 459

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
              + +  S L    K+        +       +   L +         K       Y+ 
Sbjct: 460 ESLQKHYYSILFNRAKRVAIG---CVQNAESVPSRFLLQL-------GIKSIPAAYRYEE 509

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
           V                       +   +  +   E        +   +       ++ +
Sbjct: 510 VLF-----------------PPPAFNVRQVKSFECEYDFTAHPLSASGIKSFLSCKRQFY 552

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH----- 799
                            I+      L   LS     + G  +H  L+ +F          
Sbjct: 553 YRY--------------IEHIRDHELPRDLSQE--RDIGNALHSALEKLFIDAAEYSSAV 596

Query: 800 -KRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
             ++     +    A     +  K L L  +    E        +  +   +    +   
Sbjct: 597 KIKEALRNQWENTAADDPLERHMKRLWLDKLDPFYEQE--AARFASGAKV-LYTEKEARA 653

Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
             + I +SGRID+I        + +YK+      + E        QLS+Y  +  +    
Sbjct: 654 VVEGITLSGRIDRIDEVVGRFEVIDYKSGKFPDTDKEPKESDVDYQLSVYALLAGEF--G 711

Query: 918 KSLVCLLIYVSEPKV-----FIIPQNKLNKAFAEISTK 950
               C    +++ ++           KL +  +E+++K
Sbjct: 712 DVARCGYYDLNKGELKVEQFLEAKTEKLREILSEMASK 749


>gi|229590611|ref|YP_002872730.1| putative helicase [Pseudomonas fluorescens SBW25]
 gi|229362477|emb|CAY49383.1| putative helicase [Pseudomonas fluorescens SBW25]
          Length = 815

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 20/145 (13%)

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV-----GKNTHS 211
             LL            + + ++H++IDE QD S      +R+   +             +
Sbjct: 518 LKLLSDP---------LLRPLSHLMIDEFQDVSPQIVSWLRASLREIRSRGPAMHVGRGA 568

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
              +L  VGD+ QSIY + G+ PK  +   +             + + L  ++RS   I+
Sbjct: 569 QRSSLLCVGDDWQSIYGWRGSSPKYFMAFNQEFP------SPATTRVMLGENYRSHQHII 622

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIR 296
              + +        G    ++   +
Sbjct: 623 DAAEHIVRAAPAIPGKKAKASGAPK 647


>gi|118366249|ref|XP_001016343.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89298110|gb|EAR96098.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1536

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 89/335 (26%), Gaps = 71/335 (21%)

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
                L+  +    +      +  +   DE QD + +Q++++                  
Sbjct: 136 KLYQFLQTPEGEQQVL----SKYKYFFFDEFQDVNQLQYDILILF----------KKKGS 181

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            +  +GD+ Q+IY F   + K  L +K+I+Q       +K    +L L++R +  I    
Sbjct: 182 NITVIGDDAQNIYGFR--DSKLELIQKQIDQDVLKITNKKIHEYQLSLNYRCSKPITEFS 239

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +++ +  +          T   ++ S+  Q+   + W                       
Sbjct: 240 NQIIAKSKYLIQKEMKYNTQKNYQKSQQPQIKLYKNW----------------------- 276

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                         I   I  +  T               +I +L               
Sbjct: 277 --------EHQVNSIIDQIKYLQET-----------YSLNEIAILSPTNLPLRFFEEKLE 317

Query: 395 ---FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSE 450
                  + +I         + +  +I D            D    + +           
Sbjct: 318 KNNKELINGQIPF-IYRSQSIKEFYSIND--------DDPNDTEPKLTLSTLHQAKGLEW 368

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
             +F I          +   + F    + + + + 
Sbjct: 369 KIVFFIGINDQHFPGEFMNQRTFKLQKLEECRRLF 403


>gi|238919307|ref|YP_002932822.1| DNA helicase IV [Edwardsiella ictaluri 93-146]
 gi|238868876|gb|ACR68587.1| helicase IV [Edwardsiella ictaluri 93-146]
          Length = 700

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 83/256 (32%), Gaps = 33/256 (12%)

Query: 57  SQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
           SQ +   +  +LL      ++   Q   +   +  +       L++       + ++ + 
Sbjct: 336 SQAKGWRQWLALLFDDIPEREDFWQDAALQARLAPRLAYWVGLLREHGGSQAAMVEQASE 395

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
                       L   L   ++ A K+   LDF          L ++  +   + +    
Sbjct: 396 GLRAPFQQRL-RLLTPLLKAWKAALKQEGALDFP--------ALLQQAQAQLEQGRFISP 446

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             HIL+DE QD S  +  ++ +L           +S   LFAVGD+ Q+IY F GA+   
Sbjct: 447 WRHILVDEFQDISPPRARLLAALR--------NQNSHSALFAVGDDWQAIYRFSGAQLTL 498

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                            +     L  S+R    I  + +       +    +        
Sbjct: 499 TTAFHHYF--------GEGECCRLDTSYRFNRRIGEIANGFVQQNPHQAKKT-------- 542

Query: 297 HRSSRIGQVGTVQLWE 312
             + R G   +V L  
Sbjct: 543 LNALRDGDRQSVTLLP 558



 Score = 44.9 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 104/351 (29%), Gaps = 38/351 (10%)

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
           +      D     +  + LA R+AY +  +       +   ++  +        R R  T
Sbjct: 350 DDIPEREDFWQDAALQARLAPRLAYWVGLLREHGGSQAAMVEQASEGLRAPFQQRLRLLT 409

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML----- 441
           PL+      LK +  +      +         + +      ++ +  D+S          
Sbjct: 410 PLLKAWKAALKQEGALDFPALLQQAQAQLEQGRFISPWRHILVDEFQDISPPRARLLAAL 469

Query: 442 -----KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVIKYIHELIH 493
                 S LF   +D          +      +   F      +        + I E+ +
Sbjct: 470 RNQNSHSALFAVGDDWQAIYRFSGAQLTLTTAFHHYFGEGECCRLDTSYRFNRRIGEIAN 529

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                +PH     +   + G +Q ++         L+  L+      +   S L      
Sbjct: 530 GFVQQNPHQAKKTLNALRDGDRQSVTLLPQGQ---LEALLDKLSGYVRADESILLLARYH 586

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
             +     + A      ++R MT+H +KG ++  V ++            +   ++  + 
Sbjct: 587 HLRPALLDRAATRWPGLDLRFMTLHGSKGCQADYVIVLGLHEGRDGFPAPEAPSVIEEV- 645

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                L+   +     E  RLLYV +TRA  ++ +
Sbjct: 646 ---------------------LLPVAEAFPDAEERRLLYVALTRARHRVWL 675


>gi|26989285|ref|NP_744710.1| UvrD/REP helicase [Pseudomonas putida KT2440]
 gi|24984135|gb|AAN68174.1|AE016450_4 helicase, putative [Pseudomonas putida KT2440]
          Length = 714

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 71/269 (26%), Gaps = 24/269 (8%)

Query: 47  LKKAQTLQQASQTQCIEERFSL-LSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKK 102
                          +  R +  L+   +       K    +    +          ++ 
Sbjct: 292 QAFCDRPLIWLDNYAMARRLAASLAGDAVAGPGFEYKVKGELAPAPLLDAFVSAANFIEN 351

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLL 160
              E         ++    S               E         V+ +         L 
Sbjct: 352 LGLEVNNAVAAM-SFPSGDSDALFFEALALYWKALEAHLLDQSPPVMSYN----RMFALF 406

Query: 161 --KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSP 213
                +    +   + + + H++IDE QD S      +R+   +       +    H+  
Sbjct: 407 GENNPENLHLLPDPLLRPLAHLMIDEFQDVSPQIVSWLRACLAEIRRRGPAMHTGRHAQH 466

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
            +L  VGD+ QSIY + G+ PK  +   +             + + L  ++R    ++  
Sbjct: 467 SSLLCVGDDWQSIYGWRGSSPKYFMEFTKAFP------SPANTRVMLVDNYRCQQQVIDA 520

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
            + +        G    ++          
Sbjct: 521 AEHLVKGTPAIAGKKARASGPAAELPGSP 549


>gi|331268545|ref|YP_004395037.1| ATP-dependent deoxyribonuclease subunit B [Clostridium botulinum
           BKT015925]
 gi|329125095|gb|AEB75040.1| ATP-dependent deoxyribonuclease subunit B [Clostridium botulinum
           BKT015925]
          Length = 1146

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 107/946 (11%), Positives = 258/946 (27%), Gaps = 187/946 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFI----KIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
           K   T    +   +    +      +     ++R   N  +  +     +     +   +
Sbjct: 118 KIFGTAANQEGFTNNISDIITELKRYDITPSELRASLNLIEEDEFLKDKIIDISNIFEEF 177

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           EE   K   +D ED +      L + ++              I IDE    +  Q+++  
Sbjct: 178 EENLHK-NYIDNEDELTLLCKKLDESEMYNGA---------EIWIDEFSSFTPQQYKIFE 227

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDE-KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            L +              +    D  KQ   +   A  K     ++   K   + G    
Sbjct: 228 KLIKKV--------KRINVTLCMDYYKQIDSTDVFAPTKNT---EQKLIKTLEDNGIPID 276

Query: 257 IIELPLSFRSTADILTVVD-KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
                        IL   +   F   E  + + E+                         
Sbjct: 277 K----------PIILNNTNLDRFKDNEEMRFVEENYFKYPYK------------------ 308

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
              D   N +     + +  +            IA  I  +          K   I+ ++
Sbjct: 309 PYTDKTENIKIIRAVNPYSEI----------ENIAKEIVKI---------TKDTDIRYRE 349

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           I V+ R   +      + + + N+Y+I    + +  + D+  I  + ++           
Sbjct: 350 IAVISR---ELDGYEKIVKTIFNEYEIPHFIDKKKEVDDNPLIVLITSVIEIFNKSWSYE 406

Query: 436 SFVCMLKSPLFNFSEDDIFKI--------CTQRHETETVYEY--------IQKFANCGIS 479
           S    LK+ L N  ++DI  +           +++  +++EY        I         
Sbjct: 407 SMFRYLKTGLANIEKEDIDLLENYVLAYGIRGKNKWSSIWEYGNEEILEKINDIRIKVSE 466

Query: 480 KFQHVIKYIH----------ELIHIAQFCSPHDFFTLILGA--KKGRQQFISRFGNEVID 527
                   I            + +       ++     +    + G QQ +  +  ++ +
Sbjct: 467 PLIKFYSKIKGKTNAEEICTAVYNFLCSIGVNEAIEKWVYKFKEDGNQQLVKEYS-QIWN 525

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESP 586
           ++ E L+  +   +     L++ +  L       K        ++V +  V   +  +  
Sbjct: 526 IVIELLDQVVEVFKEEKLELKDFVKILSLGFKDHKMGLIPPSLDQVLVSAVERVRTHQIK 585

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           +++++     +F      +  +  S               +++    +     +  T  E
Sbjct: 586 LLYIIGVNDGIFPAISKNEGILSDSDRGYLKKVGIEIAEDTKSKAFEEQYLIYRTLTTTE 645

Query: 647 -YNRLLY-------------VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
            Y RL Y             + +TR    L       + N  + + +   +++       
Sbjct: 646 KYLRLCYSIADYEGKALRPSIIITRFK-ALFPSITEESDNILEEDNKQDIELISREIPTF 704

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE---TIKQLMDEQKIPKKLFSPIKN 749
             +  +             +          P  +E+       +     +       ++ 
Sbjct: 705 NSLVSVIRREDEKIKVHPFWSDVYKWYSENPNWKEKVSTVFSAVSYTNAVNDISEEKVRK 764

Query: 750 DINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
                  L+ S ++   +              E  L      + G  +H +   I    E
Sbjct: 765 LYGNRLYLSVSRLEKYAQCPFGYYIKYGLKAKERKLFALTPPDLGTFMHNV---IDEFSE 821

Query: 799 H------KRKNFITSYCTK----------------------NAKLWPAKEYKNLLLSITR 830
                  K       +C K                        K +  +  + L+ +I  
Sbjct: 822 TVDKNCLKWYEIHKEWCEKTVSEIVDRKSIEVSGGIFNSSPRYKYFTERLKRVLIKTILV 881

Query: 831 LLEN---PMMTTA-----MS-CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ----QN 877
           ++E+                  +SY  + +        + + + GRID++          
Sbjct: 882 IIEHLKRSGFQPIGHEIGFGNEESYPPIEIELS---NGEKVKLIGRIDRVDKLDMDNKDY 938

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSL 920
             I +YK+  +    +  + Y    QL  Y   +   ++    + +
Sbjct: 939 YRIIDYKSG-NKDFSLSDVYYGLQLQLLTYLDAILTNEEIKEKEPV 983


>gi|183600188|ref|ZP_02961681.1| hypothetical protein PROSTU_03732 [Providencia stuartii ATCC 25827]
 gi|188022485|gb|EDU60525.1| hypothetical protein PROSTU_03732 [Providencia stuartii ATCC 25827]
          Length = 630

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/433 (15%), Positives = 131/433 (30%), Gaps = 81/433 (18%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R  I      + +DE QDT+  Q++ + S+           SS   + AVGD KQ I
Sbjct: 216 EHVRRSIRASYPIVFVDEFQDTTFAQYDFLSSVF---------KSSEAEVTAVGDYKQRI 266

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
             + GA+     + +                  L L+ RS+ +++  +  V +   + + 
Sbjct: 267 MGWAGAKGDVFHQFEADFS---------AHRHSLLLNHRSSPELVR-IQHVIAQAIDHE- 315

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                      V     S  N           S      A+ LA
Sbjct: 316 ---------------------------VREVQTSNINLISGDAAWICCSYNINQEAAHLA 348

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           + IA    +++           R +  ++  +LVR++ +         +    + +S+  
Sbjct: 349 QWIAN---DLLD----------RSLNPRNYSILVRQKPE--DYEQQLSYYLAQHGLSLR- 392

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                   + ++K      + +L++E  + F  +LK  L   +     ++ +        
Sbjct: 393 --------NESVKIGQTTLQDLLAEELTILFSTLLKLGLGRRNAQAWNQLSSDIQILRNT 444

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
            +  +K       +    I  +  L+       +  D F   +          S      
Sbjct: 445 NQEDEKALRQVERELTKFISTLRVLMQQPLTRENGRDVFERTIKFINSDDLRSSFSRYAT 504

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            D+L   L        N   +       L               N + +MT+H +KGLE 
Sbjct: 505 GDLLGINLAALEEFFTNCVDTQISWAGLL---------DEFEGTNHIPLMTIHKSKGLEF 555

Query: 586 PVVFLVDTGSQVF 598
                +      +
Sbjct: 556 DTTIFMGIDDNAW 568


>gi|85858291|ref|YP_460492.1| superfamily I DNA/RNA helicase [Syntrophus aciditrophicus SB]
 gi|85721382|gb|ABC76325.1| superfamily I DNA and RNA helicase [Syntrophus aciditrophicus SB]
          Length = 287

 Score = 85.7 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 98/259 (37%), Gaps = 35/259 (13%)

Query: 32  NKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK 91
            +   L+ +T   +     ++L    Q   + +     +   L    + +  ++   +++
Sbjct: 37  ERQKELARQTTPESWRNIVESLNNPVQQHIVTDDREKTNVLVLAGPGSGKTRVL---VHR 93

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY---LNAHYEEAKKKNCV-- 146
            +  ++ K + ++       +R    ++ +     +        +   +  A +   V  
Sbjct: 94  IAYLVRVKRENARGILALAYNRHAAVEIRRRLADLIGDDARGVTVLTCHALAMRLAGVSF 153

Query: 147 ------LDFED----LIINTNDLLKK----RDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                 LD +D    ++     LLK+     + +   R ++      IL+DE QD    Q
Sbjct: 154 AGHTEMLD-DDAFKKVLQQAVALLKREGLPPEEADEQRDRLLAGFRWILVDEYQDIGPEQ 212

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E+I +L       ++      +LFAVGD+ Q+IY+F GA  + + R +           
Sbjct: 213 YELISALAGRTSQDEDGR---LSLFAVGDDDQNIYAFDGASVEFIRRFESDY-------- 261

Query: 253 QKFSIIELPLSFRSTADIL 271
                  L  ++RSTA  L
Sbjct: 262 -DAKPAYLIDNYRSTAHTL 279


>gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
 gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN]
          Length = 893

 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 57/390 (14%), Positives = 130/390 (33%), Gaps = 74/390 (18%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           LQQ    Q  E         F        K+I   +      +   ++  + + +    +
Sbjct: 149 LQQMEDQQPWEVFVHP--ECFTEDDREALKHICKVQKMDYKRNTVLEIYHNAENYADEAN 206

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
            FN     K  L  L    +   ++   K ++ +LDFEDL+I T ++ +           
Sbjct: 207 AFNIDYALKRKLNKLISKMFYAKNFNRYKAEHNMLDFEDLLIFTYNIYRNNPDV------ 260

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
             +    + +DEVQD + +Q  ++  L                +  +GDE+Q+I+SF GA
Sbjct: 261 --RHYAWVQVDEVQDLNPLQLAIVDLLVAK---------DNPMVMYLGDEQQAIFSFMGA 309

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           + + +   K            K +I  L  + RS   +L V +                 
Sbjct: 310 KVEILSLLK---------VRCKGNIHHLLRNHRSPKYLLDVFN----------------- 343

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                  +        +L     ++  +                  + +     + +A  
Sbjct: 344 -----DYAADQLKIDRELLPTTDNKTQATAGDLLII---------ADENMEAQTQHVASV 389

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
              ++ T    +             ++V    D   ++      + ++ + + G+D   +
Sbjct: 390 THRLLTTHKDETT-----------AIIVNSNADADKVSQALENEQVEH-LKISGSD---M 434

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
            +   +K L+A    + ++ + L++  +++
Sbjct: 435 FNSKDMKLLLAHLMVLANEHNLLAWTEIMR 464


>gi|66045747|ref|YP_235588.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae B728a]
 gi|63256454|gb|AAY37550.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae B728a]
          Length = 797

 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 96/336 (28%), Gaps = 37/336 (11%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +   + + + H++IDE QD S      +R+   +         + R     +
Sbjct: 488 TSPENLKHVSDPMLRPLAHLMIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSS 547

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 548 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTRVMLSDNFRSHQHIIDAAE 601

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ-VVSQHDSQCNPQQESWTSYFD 334
            +        G    ++  ++            +L    V+ + + +   +        D
Sbjct: 602 HIVRAAPAIPGKKARASGLLQ------------ELLPVKVLDRDEDELAERVAEHYHDGD 649

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           S+           R +  +  +I  D+      +R+             K          
Sbjct: 650 SILLLYRKGSEKARFSARLQALIDADSANGAQNRRIRTLT-----YHSSKGLQADAVFLL 704

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  +S   N  + L       DL           D      +L+      +     
Sbjct: 705 GDCQHLTVSPYKNQVYRLAGLGDTNDL--------QPFDTAQKDEVLRLAYVAITRSARH 756

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                     +        A+  I++ +   + +  
Sbjct: 757 CYWYIDESATSGDAVQMPKASDRIARDKPFFEDLRN 792



 Score = 37.6 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 87/308 (28%), Gaps = 41/308 (13%)

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
             D F       +  L A  R I  +   L    + +        DD   I   R  +  
Sbjct: 508 MIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSSLLCVGDDWQSIYGWRGSSPK 567

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL--------GAKKGRQQF 517
            +    +FA    S     +                +               A    Q+ 
Sbjct: 568 YF---MEFAKEFSSPATTRVMLSDNFRSHQHIIDAAEHIVRAAPAIPGKKARASGLLQEL 624

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSL---------QELISELEQYPPTIKRAHSAN 568
           +     +  +  DE       +  +  S L             + L+          + N
Sbjct: 625 LPVKVLDRDE--DELAERVAEHYHDGDSILLLYRKGSEKARFSARLQALIDADSANGAQN 682

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +R +T H++KGL++  VFL+     +    +  +++ +  L D   +  +       
Sbjct: 683 R-RIRTLTYHSSKGLQADAVFLLGDCQHLTVSPYKNQVYRLAGLGDTNDLQPF------- 734

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                        + ++E  RL YV +TR++         + ++          D +   
Sbjct: 735 -----------DTAQKDEVLRLAYVAITRSARHCYWYIDESATSGDAVQMPKASDRIARD 783

Query: 689 FHNDERVK 696
               E ++
Sbjct: 784 KPFFEDLR 791


>gi|226951282|ref|ZP_03821746.1| UvrD/REP family helicase [Acinetobacter sp. ATCC 27244]
 gi|226837974|gb|EEH70357.1| UvrD/REP family helicase [Acinetobacter sp. ATCC 27244]
          Length = 587

 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 21/158 (13%)

Query: 137 YEEAK--KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           Y   K  +    L  +D+       L  R  +     K+ +    I++DE QD S  Q  
Sbjct: 177 YRAKKKCRDAGFLTHKDIEYLAESALTTRTATQDYAKKLAKRFQLIIVDECQDLSFEQLN 236

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++++  +             L  VGD  QSIY F   +P  ++                
Sbjct: 237 ILKAMMLN----------GTKLHFVGDLNQSIYEFRDVDPNDIINFITD---------NG 277

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           F  I+L  +FRS   I+ +   +          +    
Sbjct: 278 FREIQLTKNFRSCQKIVNIATNIMKSGSIEADFTSPEQ 315


>gi|226360004|ref|YP_002777782.1| hypothetical protein ROP_05900 [Rhodococcus opacus B4]
 gi|226238489|dbj|BAH48837.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 301

 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 73/218 (33%), Gaps = 37/218 (16%)

Query: 749 NDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
           +       L+PS      +  L            + ++   +G ++H  L+ +F LP  +
Sbjct: 22  SATRRRPALSPSRAGDFKQCPLLYRFRAVDRLPEAPSRAQVKGTVVHAALETLFGLPAAE 81

Query: 801 RKNF---------ITSYCTKNAKLWPA---KEYKNLLLSITRL------LENPMMTTAMS 842
           R                  +   L       + ++ L     L      LE+P       
Sbjct: 82  RVPARAVDLVRPSWERLLDEAPDLIDLVPVDQRESFLDEARSLVTAYYQLEDPT---RFE 138

Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI 901
            +S  E  V  ++      +++ G +D+I ++    + + +YKT     +  E      +
Sbjct: 139 AES-CEQRVETELA---DGVLLRGFVDRIDVAPTGEVRVVDYKTGRAPREMSESKA---L 191

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            Q+  Y  +L  +         L+Y++   V     ++
Sbjct: 192 FQMKFYALVLLRTRGIVPAQLRLLYLASGTVLTYAPDE 229


>gi|307701589|ref|ZP_07638606.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
 gi|307613268|gb|EFN92520.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16]
          Length = 421

 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 78/291 (26%), Gaps = 42/291 (14%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
            EE    L+   L     P  +   + + K    L  +            + F +     
Sbjct: 89  HEEAIDELAGDCLVDAGVPNSSSNRKILVKGLDFLLAR--------EFSLEGFASSSSTL 140

Query: 122 STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
           +      L + L +        N +  F   +     LL+             Q    ++
Sbjct: 141 AAAKLPRLTESLYS----QMVANGLATFNMWVYLAVLLLENNPD---FLKAQSQRWQTVI 193

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD + +   +IR L                L  VGD  Q I+ + GA         
Sbjct: 194 VDEAQDLTPLLAHLIRLLAG-----------GSRLVIVGDPCQEIFGYSGAGIPWFTD-- 240

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                        +    L   FRS  +IL VV++      +   +S  +          
Sbjct: 241 -----------PGWEEYHLTTCFRSAPEILEVVNR---ARTDGLTVSAANPRLAGRVGRH 286

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
               G             S       +  +   +  + +   + A  I Y 
Sbjct: 287 SYDPGNKDWDRLFADNICSSREAGTVAVLAPTHAELRRAGKILDAAGILYR 337


>gi|134098811|ref|YP_001104472.1| RecB family exonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|291005834|ref|ZP_06563807.1| RecB family exonuclease [Saccharopolyspora erythraea NRRL 2338]
 gi|133911434|emb|CAM01547.1| putative RecB family exonuclease [Saccharopolyspora erythraea NRRL
           2338]
          Length = 293

 Score = 85.4 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 32/236 (13%)

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQV 792
            +  +  +        L+PS      +  L            +  +   RG ++H +L+ 
Sbjct: 4   SQAETAPQPAGVRRPALSPSRAGDFKQCPLLYRFRAVDRLPETPTRAQVRGTVVHSVLER 63

Query: 793 IFTLPEHKRKNFITSYCTKNA---------------KLWPAKEYKNLLLSITRLLENPMM 837
           +F+LP  +R           A                     E    L S   LL++   
Sbjct: 64  LFSLPTAERGPERARALLAPAWEDLLAAEPGLGELFDGAGDPELARWLDSANALLDS--Y 121

Query: 838 TTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEH 895
                       +   ++    +  +++ G ID++ ++    I + +YKT     +  E 
Sbjct: 122 FELEDPRRLEPEACELRVETELESGVLLRGFIDRVDVAPTGEIRLVDYKTGAAPREIGEA 181

Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                + Q+  Y  +L  +        LL+Y+S+ +      +            +
Sbjct: 182 KA---MFQMKFYALVLWRTRGEIPRQLLLMYLSDKQSLAYTPD--EAELRRFERTL 232


>gi|330981310|gb|EGH79413.1| UvrD/REP helicase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 813

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 24/215 (11%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +   + + + H++IDE QD S      +R+   +         + R     +
Sbjct: 521 TSPENLKHVSDPMLRPLAHLMIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTRVMLSDNFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ-VVSQHDSQCNPQQESWTSYFD 334
            +        G    ++  ++            +L    V+ + + +   +        D
Sbjct: 635 HIVRAAPAIPGKKARASGLLQ------------ELLPVKVLDRDEDELAERVAEHYHDGD 682

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           S+      S    R +  +  +I  D+      +R
Sbjct: 683 SILLLYRKSSEKARFSARLQALIDADSANGAQNRR 717


>gi|302546670|ref|ZP_07299012.1| RecB family exonuclease [Streptomyces hygroscopicus ATCC 53653]
 gi|302464288|gb|EFL27381.1| RecB family exonuclease [Streptomyces himastatinicus ATCC 53653]
          Length = 306

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 65/236 (27%), Gaps = 42/236 (17%)

Query: 748 KNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                    L+PS      +  L              +    RG ++H +L+ +F  P  
Sbjct: 14  APQSGRAASLSPSRAADFMRCPLLYRFRVIDKLPEKPSAAATRGTVVHAVLERLFDAPAA 73

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLL-SITRLLENPMMT--------TAMSCDSYSEVS 850
           +R           A +    E        +  L +                      E  
Sbjct: 74  ERTAPRAR-----AMVPGEWERLVAAKPELAELFQGEDGAESPERLSEWLAGAQKLVEGW 128

Query: 851 VSGKINCPKK--------------DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEH 895
            S +     +               + + G ID++ I+   ++ I +YKT      +   
Sbjct: 129 FSLEDPTRLEPAERELFVETALESGLTLRGIIDRVDIAPTGDVRIVDYKTGKAPAPQYAG 188

Query: 896 IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                + Q+  Y  +L            L+Y+    V  +  + + +    +  K+
Sbjct: 189 EA---LFQMKFYALVLWRLRGAVPRRLQLVYLGSGDV--LTYDPVERDLLGVERKV 239


>gi|126734387|ref|ZP_01750134.1| hypothetical protein RCCS2_09509 [Roseobacter sp. CCS2]
 gi|126717253|gb|EBA14117.1| hypothetical protein RCCS2_09509 [Roseobacter sp. CCS2]
          Length = 975

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 73/649 (11%), Positives = 170/649 (26%), Gaps = 66/649 (10%)

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
               + E ST +  H +       +++             +       +   +L + +S 
Sbjct: 269 QRHDVREWSTQSPAHPARNALVSLSLRPAPVTDQWLSEGPDLGDLYEATKGLTLVEAASP 328

Query: 343 SILARRIAYTISN---------MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF-- 391
              A  IA  +           +I  D + +      +   DI           L     
Sbjct: 329 RAEAETIALRLRQAAEDGITAALISPDRMLTRQVTAALDRWDIKPDDSAGTPLALSPPGR 388

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
             R + + +   + G     L  H               + + L     L+  L  F   
Sbjct: 389 FLRHVADLFGKPLTGEALLTLLKHPLCH------SARDDRGEHLRHTRDLELHLRRFGP- 441

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL--IHIAQFCSPHDFFTLIL- 508
                   + E    +                +I  + +L    +A     H      L 
Sbjct: 442 -----PFPKPEDLLTWAKKGSAREDWAMWLAGLIAGLEDLASRPLAHHLDQHIILAEQLC 496

Query: 509 ---GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
               A      +    G E     D  +         +      L   +        R  
Sbjct: 497 AGPTASGSGGLWDEAAGREARKTCDNLIQAAAAGGTMTPHDYTALFGSV--IAEGTVRDR 554

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            A H  + I     A+     +  L      V+         +   +    G+ +   + 
Sbjct: 555 DAGHPGILIWGTLEARVQGVDLTILGGMNDGVWPEAPPPDPWLNRVMRAKAGLLLPERRI 614

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
               +     +    +       R        +     +         K    +   D +
Sbjct: 615 GLSAHDYQQAV-AGHEVWITRAKRSADAETVPSRWVNRLTNLL-----KGLPDQNGPDAL 668

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                  ++   +    S  +    +    +  P      ++ ++ Q+    + P  +++
Sbjct: 669 AAMCAKGDQWSAMAAVLSTPQARVPSAPRPSPCPPVAARPKKLSVTQIKTLIRDPFTIYA 728

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNF 804
                ++    L P+                     RG I+H++L+  I        ++ 
Sbjct: 729 RKTLHLSPLDPLVPTA----------------DAPLRGTIMHRILERFIRAGHGPNDRDA 772

Query: 805 ITSYCTKNA------KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
           +    ++            A+    +  S  + L +     A++ D   EV   G+I   
Sbjct: 773 LMQLASEEFTAHCPWPTIRAQWMARMERSADQFLADEADRQALATDHKIEVY--GEIVVA 830

Query: 859 KKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
              ++++ + D+I +++     I++YKT     +  +        QL +
Sbjct: 831 PSGVLLTCKADRIDLTKTGAALIYDYKTGAVPTKNQQLTFDK---QLLL 876


>gi|283953894|ref|ZP_06371424.1| hypothetical protein C414_000020075 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794673|gb|EFC33412.1| hypothetical protein C414_000020075 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 788

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 69/564 (12%), Positives = 164/564 (29%), Gaps = 67/564 (11%)

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             ++  ++  +   K  ++A ++  L         I+   R       I+V+  D     
Sbjct: 221 QEILKEESFEARNSKIKLKAFELRALQCA-FVMDEISHFVRKGLKPENITVITPD-ESFC 278

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
           + L + D   +     +  + +S    L    F    +    +       E  +E  Q  
Sbjct: 279 EFLRLFDKENML----NFANGISIKESLFYQKFQALYESASSVSFVYKNQEDYFEDTQMV 334

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
            +   +    +     E           ++F  +L      +         +   L    
Sbjct: 335 FDYHNTLLHSLKLDFIEFKKHFDEKCDFEYFEKLLALF--LENEKQELIYLIEKELYFIK 392

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           N            +     ++ Q              +V +M +  ++GL    V LVD 
Sbjct: 393 NLLKNQSLTLKELIHLFFMQISQLSL-----SDVGGGKVTVMGLLESRGLCFDGVILVDF 447

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             +    + I ++ +   +    G+  +  +   +                    R  Y 
Sbjct: 448 NEEFIPKRSINELFLNNEVRKKAGLISYDRRENLQ--------------------RFYYE 487

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            + + + ++ IC   N    K           +   H  ++     L       +     
Sbjct: 488 SLMKNALEVSICFVENEEKSKSRFLDELDFEFFYETHTHQQAYLNALKLDYEGIKPNLTP 547

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                 ++ P E   +  +    +   +  +     ++ EP  L+               
Sbjct: 548 IKAPVLKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRFLS--------------- 592

Query: 774 LSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCTKNAKL--WPAKEYKNLLLSIT 829
             +++  N+G  IHK+L++               T+   K  +       + +   L   
Sbjct: 593 -DESKAKNQGNFIHKMLEIYYKNYANNDFDIKVFTNLLEKEYQKYNIGELDLEVFKLKFI 651

Query: 830 RLLENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
           +  +N       S     +++E+ ++  +      I + G ID+I  S++   I +YK+ 
Sbjct: 652 QFAKNE--KEHFSQGFYVAHTELELNNILKLGTDKIKLKGTIDRIDSSKEGNLIIDYKSG 709

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKI 910
                           QL+ Y+ +
Sbjct: 710 KVPSNSY---------QLAFYQAL 724


>gi|256838546|ref|ZP_05544056.1| ATP-dependent DNA helicase UvrD [Parabacteroides sp. D13]
 gi|256739465|gb|EEU52789.1| ATP-dependent DNA helicase UvrD [Parabacteroides sp. D13]
          Length = 553

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 107/330 (32%), Gaps = 44/330 (13%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             + F+D++  ++ LL +      I   I     +I +DE QDT     + +  L     
Sbjct: 190 GYMSFDDILYFSHILLSRYP---NIYKLIKARYPYIFVDEFQDTIPFVVDFLTLL----- 241

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                 +    +  VGD+ QSIY F GA  ++                 +    E+  + 
Sbjct: 242 -----GNDGVIIGVVGDKAQSIYDFLGATVQQFDNFA----------LPEMQEFEIRGNR 286

Query: 265 RSTADILTVVDKV---FSI--PENAQGLSEDSTTTIRHRSSRI--GQVGTVQLWEQVVSQ 317
           RST  I+ +++ V   FS      A+G+  +          +    + GT ++       
Sbjct: 287 RSTKQIIELLNIVRTDFSQDWLNGAEGMVPELLVGDMLNCYQQSIEKSGTDEIQSLAFQN 346

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
             +     +         L  +  +++  + +   I  +I           R      + 
Sbjct: 347 VLANSMRNKNGMRKAEKILEMDFDSNVERQMV---IKALIKAVEYTRMNDLRNA-WHQLD 402

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG-----RFILSQE 432
           ++ R+R  T +   L R L N        +   +   +  + DL         + I    
Sbjct: 403 IIDRERSLTIV---LLRHLLN--GYKDYKDGSMMDFYNFLVNDLHVKMPKIKKKTIKDFY 457

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            D ++        +  S D    I   + E
Sbjct: 458 MDHTYADAALGVKYGDSNDKHKTIHKSKGE 487


>gi|229496489|ref|ZP_04390203.1| UvrD/REP helicase domain protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316386|gb|EEN82305.1| UvrD/REP helicase domain protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 536

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 21/174 (12%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK---KRDVSAWIR 170
           + T    + TL  L     +NA   +  +++  L    L+ +T   ++       + +I 
Sbjct: 324 YRTALCTRKTLNVLGTLGDINAMMMQQGRESNTL----LLASTQQFIQRIIDNADAPFIY 379

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            ++   ++H+++DE QDT+ IQ+E IR L E+     N +        VGD KQSIY F 
Sbjct: 380 ERLGSVLHHLMLDEFQDTARIQYENIRPLLENTLSSGNDN------LIVGDVKQSIYKFR 433

Query: 231 GAEPK-RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
             +         +      ++         L  ++RST +++   + +F    +
Sbjct: 434 HCDRHILGSTLHKEFADYYSHH-------PLRYNWRSTPEVVLFNNAIFKQLPS 480


>gi|77458897|ref|YP_348403.1| UvrD/REP helicase [Pseudomonas fluorescens Pf0-1]
 gi|77382900|gb|ABA74413.1| putative helicase [Pseudomonas fluorescens Pf0-1]
          Length = 824

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 74/256 (28%), Gaps = 23/256 (8%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKF---TPQKNIITQEINKKSPDLKEKLKKSQDEFIK 109
           L      +  +   + L              +  + +  +          ++    +   
Sbjct: 407 LIWLDSYESSKRLLATLVGDVSAGPGFDYKVKGELASSPLLDCFVAAAGFIENLGLDVPD 466

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKK--RDV 165
              R +  K                   E+        V+ +         L  +   + 
Sbjct: 467 AVGRMSFAKDDPD-RFFFEALSLFWRALEDHLLDQKPPVMTYN----RMFALFSEHSPEN 521

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV-----GKNTHSSPRTLFAVG 220
              +  ++ + ++H++IDE QD S      IR+   +             +   +L  VG
Sbjct: 522 FKLLSDELLRPMSHLMIDEFQDVSPQIVSWIRASLSEIRSRGPAMHVGRGAQRSSLLCVG 581

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D+ QSIY + G+ P   +   +             + + L  ++RS   I+   + +   
Sbjct: 582 DDWQSIYGWRGSSPSYFMEFNKEFP------SPSTTRVMLSDNYRSHQHIIDAAEHIVRA 635

Query: 281 PENAQGLSEDSTTTIR 296
                G    ++   R
Sbjct: 636 APAIPGKKAKASGEER 651


>gi|89056556|ref|YP_512007.1| hypothetical protein Jann_4065 [Jannaschia sp. CCS1]
 gi|88866105|gb|ABD56982.1| hypothetical protein Jann_4065 [Jannaschia sp. CCS1]
          Length = 986

 Score = 85.4 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 80/697 (11%), Positives = 176/697 (25%), Gaps = 71/697 (10%)

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           R+T  +    + V S+      ++    T     +   G +  V L E    Q ++    
Sbjct: 281 RATPAV-PARNAVVSLALRPAPVTNQWRTEGPKLTDVSGAMAGVTLLEAPSPQMEATAIA 339

Query: 325 QQ-ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            +     +    +   +    LAR++   +          +            L  V + 
Sbjct: 340 LRMRKGVADGQRVALVTPDRRLARKVTAQLDRWRILPDDSAGQVLAQTAPGRFLRQVAEM 399

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
              P+       L     +   G DR          +L  L + +               
Sbjct: 400 LCGPVTAEAMVALL-KNPLCNSGPDRGNHLRRTVDLELQLLRKGLTFP------------ 446

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                +   +      R +      ++   A+  +   +     + E   +A   S  D 
Sbjct: 447 -----TRAALMDWAAARKDDVDTTAWVTWLADHLLEPVETAALPLAE--RVALHKSRADA 499

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
               +      + +    G +   +L E           S     +  + L         
Sbjct: 500 LAAGVDQTTTHELYKQEPGEKAETLLRELQAVADTGGAMSARDYADFFTALAHDREVRF- 558

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                H +V I     A+   + V  L       +         +   L  D G+ +   
Sbjct: 559 -ALRPHADVLIWGTQEARVQGADVTILAGLNEGTWPQAASADPWLNRPLRADAGLRLPDR 617

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                 +     I                     A  ++ + +            R    
Sbjct: 618 VIGLSAHDFQQGI---------------------AGGEVWLSRAKRDDETDTVPARWLNR 656

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
           +V       +   +          EW+    +   P+              +  ++    
Sbjct: 657 LVNLLGGASDASSQALTDMQARGAEWLTLADTLSTPDARETPAPRPAPAPQNITRLTALS 716

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRK 802
            + I+  I +PY +  + +       L+ L +      RG + H++++  I   P    +
Sbjct: 717 VTDIERLIRDPYAIYAARM--LNLRALDPLRASPDARLRGTVFHRIMEQFITATPTDLPE 774

Query: 803 NFITSYCTKNAKLW-----PAKEYKNLLLSITRLL-----ENPMMTTAMSCDSYSEVSVS 852
           +    +      +                 +  +L     +              E    
Sbjct: 775 DAGQVFMGLAGDILAQDAPWPAARHLWRHRLQTILPWYLAQEASFRALAEPWVLEER--- 831

Query: 853 GKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
              + P   + +SG  D+I         I++YKT +     +E     +  QL +    L
Sbjct: 832 KDWHVPGLGMTLSGIADRIDSLPDGRVAIYDYKTGNLPTDRME---IAYNKQLLL--LAL 886

Query: 912 KDS---YPNKSLV-CLLIYVSEPKVFIIPQNKLNKAF 944
                 + ++ L    L YV       I     +   
Sbjct: 887 MGRGGAFADRPLDVARLAYVGLGTKPEIRAQDFDDGL 923


>gi|317180744|dbj|BAJ58530.1| hypothetical protein HPF32_0948 [Helicobacter pylori F32]
          Length = 777

 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 52/466 (11%), Positives = 133/466 (28%), Gaps = 79/466 (16%)

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTI 561
           +L  +      + +  ++    L E  +  +       +  +  SL++L+    Q     
Sbjct: 334 LLDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLTNYSLKDLLHLYLQEFEAN 393

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            R   ++  ++R+M     +G++   + +VD             + +  +L     +P  
Sbjct: 394 FRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLFLNSALRKSLNLPTL 453

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           + +   + +    L                     + S ++++    + +++  +     
Sbjct: 454 LDKKNLQKHYYYQLF--------------------KNSKEMVLSYIESETSKVSN----- 488

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             ++  + H +       L       ++   E     P++                 +  
Sbjct: 489 -MLLELNLHIEPIKDAYTLFEQTPLKDYQEEEIKATIPKDFSF----------SASSLNA 537

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEH 799
            L    +   +       S  D    T              G ++H+LL+ +       +
Sbjct: 538 FLTCKRRFYYHYIKRFKESPKDENNST-------------VGSLLHELLKEVYEKDKNPY 584

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
             +  +         + P +    L+    I                    + +      
Sbjct: 585 ALEERLIQLLETRGNITPKERLDTLIALKKIQAFYVKE--KERFKAKIKI-LDLEKSFET 641

Query: 858 PKKDIIISGRIDQISIS-QQNIFIFEYKT--------------HHHVPQEIEHIPYTHIA 902
             + +   GRID+I  +    I + +YK                   P EI  I   +  
Sbjct: 642 TIQGVAFKGRIDRIDKTADNGIILLDYKFKSELKLDNMSEKQRGSLSPIEIAQISADY-- 699

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
           Q++IY   LK+     S+      + + K+    +  L      + 
Sbjct: 700 QMAIYAFALKNLGYKGSIKAFFYDLRKGKLLE-EEPVLQAKMDYLK 744


>gi|228924943|ref|ZP_04088091.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228834721|gb|EEM80212.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 596

 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 108/306 (35%), Gaps = 32/306 (10%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            ++  +   +++   K   +D +D+I  +  +L K      I   +       L+DE QD
Sbjct: 160 AISHDVAKEWKKLLHKKHYIDQQDIIYLSYLILNK---FKHISKALSIRFPQFLVDEYQD 216

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            +  Q ++   L               + F VGD  QSI+ F GA  +   ++K      
Sbjct: 217 VTWHQDQIFSIL------------ESSSFFCVGDFNQSIFGFTGANSEVFQKKKD----- 259

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                 K    EL  +FRST  I+   +    I +   G +  S   +   +    +VG 
Sbjct: 260 ------KQQFYELNNNFRSTNHIIGFSNYKTDISQIGAGTNASSIQKVFMFTGLEKEVGA 313

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           ++L+ +V      +   +Q           +     + A +I    +  +G+       +
Sbjct: 314 IELFHRVRESVGCENAYKQFMILGRKTKYLRNLHDIVKAEKIQP--NTFLGSLKEKDYRR 371

Query: 368 KRVIQAKDILVLVRK----RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
             ++    + +L ++     K   ++      L  +   + +  +       +  K  +A
Sbjct: 372 FEILNNILLAILYKREGELDKGLEMMDMAFSRLFFNKLPNYIQLESIKYERLMWKKLQIA 431

Query: 424 LGRFIL 429
           L  +I 
Sbjct: 432 LLYYID 437


>gi|108800103|ref|YP_640300.1| RecB family exonuclease [Mycobacterium sp. MCS]
 gi|119869231|ref|YP_939183.1| RecB family exonuclease [Mycobacterium sp. KMS]
 gi|126435728|ref|YP_001071419.1| RecB family exonuclease [Mycobacterium sp. JLS]
 gi|108770522|gb|ABG09244.1| putative RecB family exonuclease [Mycobacterium sp. MCS]
 gi|119695320|gb|ABL92393.1| putative RecB family exonuclease [Mycobacterium sp. KMS]
 gi|126235528|gb|ABN98928.1| putative RecB family exonuclease [Mycobacterium sp. JLS]
          Length = 277

 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 64/214 (29%), Gaps = 26/214 (12%)

Query: 749 NDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                   L+PS      +  L              +    RG ++H  L+ ++ LP   
Sbjct: 5   AAPVRRPALSPSRAADFKQCPLLYRFRAIDRLPEPQSTAQLRGSVVHAALEQLYALPAAD 64

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM--TTAMSCDSYS----------- 847
           R           A      E       I   +   ++    A+    Y            
Sbjct: 65  RGPDTALTLVAPAWDRVIAERPEAAEDIEPAVREALLGEARALLAGYYRLEDPTRFDPQC 124

Query: 848 -EVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
            E  V  ++       ++ G +D+I ++    + + +YKT    P+         + Q+ 
Sbjct: 125 CEQHVEVEL---DDGTLLRGFVDRIDVAPTGELRVVDYKTGKAPPEARALAEAKALFQMK 181

Query: 906 IYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            Y   L  S         L+Y+++ +V     + 
Sbjct: 182 FYAVALLRSRGVLPTRLRLLYLADSQVLDYSPDL 215


>gi|126658789|ref|ZP_01729933.1| helicase/exonuclease [Cyanothece sp. CCY0110]
 gi|126619887|gb|EAZ90612.1| helicase/exonuclease [Cyanothece sp. CCY0110]
          Length = 231

 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 79/246 (32%), Gaps = 37/246 (15%)

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +   +  +     + +   +  Q+  +     F+ + + I    +      P D    IL
Sbjct: 22  TNTTVELLDLLIPKIKQHSQKRQEVVSKYGQNFEALAQQIEMWKNDIYRLRPADLLGKIL 81

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA- 567
              +  + +    G    + L + +      +  + +S   L + LE    +    H + 
Sbjct: 82  VESELYRYYEKD-GENRTENLQKLVKMFKNKDDKTLNSYVSLRNILEYTALSKNIDHISK 140

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           ++N+V ++T+H +KGLE   VF+       F +                           
Sbjct: 141 DNNQVLLITIHQSKGLEFDTVFVAGLSQGEFPN--------------------------- 173

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                      +K    EE  RL YV MTRA   L +  +             + D + +
Sbjct: 174 --------YYSIKDGKIEEEKRLFYVAMTRAKKSLYLSSYLKDKKGYTKEISQFIDDIPE 225

Query: 688 SFHNDE 693
            +   E
Sbjct: 226 EYIELE 231


>gi|330953431|gb|EGH53691.1| UvrD/REP helicase [Pseudomonas syringae Cit 7]
          Length = 830

 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 11/141 (7%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRT 215
              +    +   + + + H++IDE QD S      +R+   +             +   +
Sbjct: 521 TSPENLKHVSDPMLRPLAHLMIDEFQDVSPQIVSWLRASLREIRRRGPASHTGRIAQHSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTRVMLSDNFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIR 296
            +        G    ++ T++
Sbjct: 635 HIVRAAPAIPGKKARASGTLQ 655


>gi|301311844|ref|ZP_07217766.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300829946|gb|EFK60594.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 567

 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 74/533 (13%), Positives = 138/533 (25%), Gaps = 152/533 (28%)

Query: 152 LIINTNDLLKKR--DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           ++I    +L     D S   R  +     ++ +DE QDT + Q  +   L          
Sbjct: 144 ILIECIGILANYIFDNSKACRSYLKSRYKYLYVDEYQDTGIDQHYLFIKL---------- 193

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
            +    + AVGD  QSI+ F G +   + R ++          + F    L  + RS   
Sbjct: 194 KNMGIIMAAVGDVNQSIFEFSGKKSYYLKRIRQD---------KTFRSFILSQNHRSHQS 244

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+   +++         + E         S                              
Sbjct: 245 IVNYSNRLIDSTCTITDIPEKDRRVFYFISL----------------------------- 275

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                          +A  I   I++++            + +   I +L R  K+   I
Sbjct: 276 ----------GDEKHIASFIDEKIASIMNA--------YNIDKFNKIAILFRNSKNAQYI 317

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
           +   + L   +KI  V   +  +   +      ++ RFI +  +    +    S   +  
Sbjct: 318 S---QELNTPHKI--VSPTKLDMQISIWASIFASILRFIFNPTNRFIDIVETYSSFDSLR 372

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHV-IKYIHELIHIAQFCSPHDFFTLIL 508
                 +         +   +     C    F    I     L+  A   +  +    ++
Sbjct: 373 NTQKRSLQ---KSNIVLNGIVDHGEICNKDLFIETSINIATILMPEAHNINDINLLKEVV 429

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
              K    + S   NE                                            
Sbjct: 430 FDSKQLDSYRSEDSNE-------------------------------------------- 445

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              + +MT+H +KGLE   V   D        K ++  +    L                
Sbjct: 446 ---INLMTLHKSKGLEFDAVIHADLYEWGLPSKKVENNNFKEPLYP-------------- 488

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                           E+   L YVG+TRA    I+ +               
Sbjct: 489 --------------NWEQDLNLHYVGITRAKKVCILIRSEKRHKSNGELTNAQ 527


>gi|257056217|ref|YP_003134049.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017]
 gi|256586089|gb|ACU97222.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017]
          Length = 333

 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 68/221 (30%), Gaps = 31/221 (14%)

Query: 749 NDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                   L+PS      +  L               +   RG ++H +L+ +F LP   
Sbjct: 51  QQTARRPALSPSRASDFKQCPLLYRFRAVDRLPEPPTKAQVRGTLVHSVLERLFGLPRAD 110

Query: 801 RKNFITS----------------YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
           R                      +    ++    KE    L S  +LL++          
Sbjct: 111 RTPERARELLRPTWSQLSEECPEWMELFSEENFDKELNQWLTSAEKLLDS--YFKLEDPR 168

Query: 845 SYSEVSVSGKINCPK-KDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIA 902
                +    +       +++ G ID++ ++    I + +YKT     +  E      + 
Sbjct: 169 RLDPEACELHVETELSSGVLLRGYIDRVDVAPTGEIRVVDYKTGAAPREIGEAKA---MF 225

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
           Q+  Y  +L            L+Y+S+ +      ++   A
Sbjct: 226 QMKFYAVVLWRLRGIVPRQLKLMYLSDGQALAYTPDEPELA 266


>gi|260205407|ref|ZP_05772898.1| hypothetical protein MtubK8_13997 [Mycobacterium tuberculosis K85]
 gi|289574798|ref|ZP_06455025.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289539229|gb|EFD43807.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
          Length = 278

 Score = 85.0 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 34/219 (15%)

Query: 748 KNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            +       L+PS      +  L            + +    RG ++H  L+ ++ LP  
Sbjct: 5   PDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAG 64

Query: 800 KR-KNFITSYCTKN-----------AKLWPAKEYKNLLLSITRL------LENPMMTTAM 841
            R  +   S   +            A      +   LL     L      LE+P      
Sbjct: 65  LRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPT---RF 121

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900
                 E  V  ++       ++ G ID+I ++    + + +YKT    P       +  
Sbjct: 122 DPQC-CEQRVEVELA---DGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALTEFKA 177

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
           + Q+  Y   L  S         LIY+++ ++     ++
Sbjct: 178 MFQMKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDR 216


>gi|332036319|gb|EGI72790.1| DNA helicase IV [Pseudoalteromonas haloplanktis ANT/505]
          Length = 730

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 74/246 (30%), Gaps = 33/246 (13%)

Query: 43  NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKK 102
                  A+ L+Q +          +  +  L      Q+ I       K     + ++ 
Sbjct: 239 GKLEQTLAKQLKQHNVELTPLSSDEIFHT--LNNSGQLQQGI------DKYIKCLQAIRV 290

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            Q    +I  R     +      +  L   ++  Y         +DF+D+II        
Sbjct: 291 EQLSNKQIAQRIKQSGIKNYQQYA-NLLVQIHDAYINELSTQNAIDFDDMIIQATK---- 345

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               A +    +   +HIL+DE QD S  +   + ++ +          +     AVGD+
Sbjct: 346 ----AIVSGDFNIPWSHILVDEFQDISSARMGFLNAILKY--------GNGIRFTAVGDD 393

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q+IY F G       R                S+  L  +FR    I  V  +      
Sbjct: 394 WQAIYRFSGGNLALTTRF--------NELVGSHSLTMLQKTFRYNNSISDVAGRFVMQNP 445

Query: 283 NAQGLS 288
                 
Sbjct: 446 EQYKKQ 451



 Score = 42.6 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 68/542 (12%), Positives = 150/542 (27%), Gaps = 75/542 (13%)

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL---IDEVQDTSLIQWEVIRSLTE---- 201
           F DL+    D+   +D + + RY  D E   +    +   Q+  +  W  +  +      
Sbjct: 104 FVDLLHEPIDIFSFKDNAQYERYVRDNEYRSLAGHKVKSYQEVLISNWLHLNCMAHSYEV 163

Query: 202 --DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
              F  G       +  F +   +  IY  H     R    +    K+  N    F    
Sbjct: 164 NYHFNQGTELSGQYQPDFYI--PQYDIYLEHFG-IDRQGNTRADIDKKHYNEQIAFKRKL 220

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ-- 317
              +      +L      F        L +     ++           V+L      +  
Sbjct: 221 HKKN---GTTLLET----FHYNWVEGKLEQTLAKQLKQH--------NVELTPLSSDEIF 265

Query: 318 -HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              +     Q+    Y   L       +  ++IA  I         +      ++Q  D 
Sbjct: 266 HTLNNSGQLQQGIDKYIKCLQAIRVEQLSNKQIAQRIKQ--SGIKNYQQYANLLVQIHDA 323

Query: 377 LVLVRKRKDTPLITFLTRFLKNDY-----KISV--VGNDRFILTDHLAIKDLMALGRF-- 427
            +     ++      +              I    +  D F       +  L A+ ++  
Sbjct: 324 YINELSTQNAIDFDDMIIQATKAIVSGDFNIPWSHILVDEFQDISSARMGFLNAILKYGN 383

Query: 428 -ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
            I        +  + +    N +    F      H    + +  +   +      + V++
Sbjct: 384 GIRFTAVGDDWQAIYRFSGGNLALTTRFNELVGSHSLTMLQKTFRYNNSISDVAGRFVMQ 443

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
              +        +      +IL           +    +   + + ++   +N+ ++  +
Sbjct: 444 NPEQYKKQISTHTQVTTPQVILLDDLY------QGTKSIEIKVQQSISTIQKNDASASIA 497

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV--FSHKHIK 604
           +      +             + N +   T+H+AKGLE+    ++        F   +  
Sbjct: 498 ILSRYRYM-LNSVQQHLKDKKHTNPLYFWTLHSAKGLEADYCIIIGFEQGKLGFPSDNQN 556

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            + +                          L+    + T  E  RLLYVG+TRA  +  +
Sbjct: 557 NVLV------------------------ESLLPEQDEFTHSEERRLLYVGITRAKHKAYL 592

Query: 665 CK 666
             
Sbjct: 593 IA 594


>gi|85373840|ref|YP_457902.1| helicase [Erythrobacter litoralis HTCC2594]
 gi|84786923|gb|ABC63105.1| helicase [Erythrobacter litoralis HTCC2594]
          Length = 994

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 57/642 (8%), Positives = 157/642 (24%), Gaps = 68/642 (10%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
           K+                     ++R  +   V              +   E        
Sbjct: 296 KLLLNRMGVSRDEIQPWHRKGSGAARSERSHAVSAVFLPPEASKVWVDLPSEKRHLSGIR 355

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
           L +  +    A+ +A  +   +                + + V+   R     +    R 
Sbjct: 356 LMELPNPEAEAQAVALAVRQALAE------------PERRVAVITPDRNLARRVVHHLR- 402

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
               + I    +    L    A +  + L   + +    +  + +L  PL    E+    
Sbjct: 403 ---RWNIEADDSAGRPLAQTTAGRLFLLLAEVMGTNAAPVPLMALLGHPLVRQGEERRQW 459

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
           +   R     +           I       + I     +     P       L       
Sbjct: 460 LRDLRALERKLRGSRPAPGLAAIRPVAREAQVIDWWEEVEALLGPLAGTDDPLSLADCLD 519

Query: 516 QFIS---------RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---EQYPPTIKR 563
              +          +  E    L   +    ++ +   + ++   +     +       R
Sbjct: 520 TLAAVGEALCGEALWAQEDGRALSATVEDLRQHARAVGTQIRRADAHAILTDAMDQVAVR 579

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                H  V I  +  A+   + +V         +  +      + P +    G+P    
Sbjct: 580 PPYGGHPRVAIYGLLEARMSRADLVICAGLNEGSWPGRPSVDPLLAPPVLRALGVPGADF 639

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
           +     + ++  +   +            V ++R+             + +     + + 
Sbjct: 640 RIGLSAHDLAGALGAPE------------VLLSRSER-----------DAEGPAIPSRFL 676

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
           +   +   +   +  +       +          +    P+   E  ++ +    + +  
Sbjct: 677 LRVKALLGELLERYEERDLPRLAERIDDAPLEPRYQRPEPMPSAEERRERISVTALDRLR 736

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
             P +   +    L            L+ L ++     +G + H +L+            
Sbjct: 737 SDPYQFYASAILRLK----------ELDGLDAEPTPAWQGQLAHDILEHWHEHGGSLPDI 786

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   +        ++  L+     + +            + V          + + 
Sbjct: 787 AKAKLTEMDHHPLTRALWEPRLMKALEWVASE----IEGDMDRTPVLWEKWGEIEHRGVT 842

Query: 864 ISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           I GRID++   +     + +YKT          +   +  QL
Sbjct: 843 IFGRIDRLDRLADGTFAVVDYKTGSPPSGS--QVEAGYALQL 882


>gi|225026994|ref|ZP_03716186.1| hypothetical protein EUBHAL_01250 [Eubacterium hallii DSM 3353]
 gi|224955679|gb|EEG36888.1| hypothetical protein EUBHAL_01250 [Eubacterium hallii DSM 3353]
          Length = 1134

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 81/698 (11%), Positives = 185/698 (26%), Gaps = 145/698 (20%)

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            A  + + I  ++           +  + +D  VL     D        +       I V
Sbjct: 320 EADYVMHKIEQLVRQ---------KGYRYRDFAVL---SGDVADYASAFKRKAAILNIPV 367

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ----- 459
             + +  ++ H  ++ + +L      +    S    LKS + N  ++D   +        
Sbjct: 368 FEDTKKKVSYHSGVEAVRSLFHLAQMEYSYESVFRYLKSGMSNLIDEDADYLENYVLYAG 427

Query: 460 -RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA---------QFCSPHDFFTLILG 509
            R  +     + ++  N   +  + ++    + +            +  S  D    +L 
Sbjct: 428 VRGYSMWKKPFYRRLKNKDEAAIKALLLLQEKFMEETENFCSVMRDKEASVRDKIE-VLY 486

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSA- 567
               +  F  +  N+     +E  +F    E +  Y  L  L+ ++       K A    
Sbjct: 487 HTMVKLSFEEKLKNQAQKA-EENSDFVKAAEYRQLYDLLLSLMDKIVMIFGEEKMAVKEL 545

Query: 568 ------------------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
                               ++V +  +   +  E  V+F+                   
Sbjct: 546 AEIVDAGLDALGLGVVPLTMDQVVLGDLKRTRLHEVKVLFITGMNDGKIPPN-------- 597

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                +    +   + +   N    L + L + + E+   + Y+   + +D+L       
Sbjct: 598 ----IEDRGLLSDEEKEVLKNCGISLSQSLLEQSMEDEFYM-YMAFAKPTDELYFSYSVT 652

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
            S+            +   F   +R +  +       +   + E+          E E+ 
Sbjct: 653 DSDGSALRPSLLQKNISQLFPKLKRKQYPEEERRYYFNLEDSREFLIESFLQAKTEPEKV 712

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEP------------------------YILNPS--TID 763
            K           L         E                           L+ S   ++
Sbjct: 713 RKNRAFVMLAKYWLEQSEGRKELEKYGHWIENAYQEPELSEELLEQLYGKELSGSVTRLE 772

Query: 764 TKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIFTLPEH-------KRKNFI 805
                             E      +  + G + HK L+      +              
Sbjct: 773 RFAACPYQYFCIYGLELREREEYKIRPIDLGNLFHKALECFSRKVKESEYSWKNIPDEVQ 832

Query: 806 TSYCTKNAKLWPAKEY-----------------KNLLLSITRLLENPMMTTAMSCDSYSE 848
             Y ++       +                   + ++    ++L   +  +    D   E
Sbjct: 833 EQYISEALHTAMDENLSDVFQSSSRNQYKIKTVERIMKRTIQVLRVHLKNSQFEPD-RFE 891

Query: 849 VSV-------SGKINCPKKDII-ISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHI 896
           +S          ++       + + G ID++        I   + +YK+      E+E  
Sbjct: 892 LSFGKNKKLKEAEVPLEDGRKMFLQGVIDRVDTCEDDDEILMKVIDYKSG-MKKFELEDF 950

Query: 897 PYTHIAQLSIYEKILKDSYP-------NKSLV-CLLIY 926
            Y    QL IY    ++ Y        NK +V   + Y
Sbjct: 951 YYGLEMQLVIYMNAAEEIYKENEQNPDNKPVVPAGIFY 988


>gi|298251766|ref|ZP_06975569.1| ATP-dependent DNA helicase, RecQ family [Ktedonobacter racemifer DSM
            44963]
 gi|297546358|gb|EFH80226.1| ATP-dependent DNA helicase, RecQ family [Ktedonobacter racemifer DSM
            44963]
          Length = 3126

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 73/491 (14%), Positives = 146/491 (29%), Gaps = 65/491 (13%)

Query: 113  RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
            R    +  K T A      Y+   Y           + D  +    +L+       + + 
Sbjct: 2659 RRCFDRNMKPTDALHVYCAYVL--YLITLLDEGKYTYSDQTLCALQILRSNPE---VAHH 2713

Query: 173  IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                  HI+IDE QD +  +  +I  L++            + +F VGD+ Q+I      
Sbjct: 2714 YQSRFEHIIIDEAQDFTQAERTLISILSKH----------HQNIFMVGDDYQNI------ 2757

Query: 233  EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               R     R       +  Q  ++  L +++RS  +I        +       L+    
Sbjct: 2758 ---RPNNMGRYTPLERWSLIQDLTLHSLMINYRSAQEI-----LDLANLLLDDLLNPFLF 2809

Query: 293  TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
            T  +  + R  +   VQ           +     +   +  D+  Q      +A  +A +
Sbjct: 2810 TETKQIAHRGYRGERVQALYF----STGKIPAMIDQVLTIIDNELQLRDKKSIAIMLAKS 2865

Query: 353  ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
               M+   T       R     +I    +                    +++     F L
Sbjct: 2866 ERVMLDEITKRLTDLHRPFILMNIQHKYQT------------------PLALQVRTYFQL 2907

Query: 413  TDHLAIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRHETETVYEYIQ 471
                   + M    F+    DD +++ + + +    + E  +  I   R           
Sbjct: 2908 IVEPRENEAMKKL-FLYCCSDDTAWMTIHQLTEKAAYEERALLDILLDRKTINRYG---- 2962

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
                   +     ++ I     +     P+  F  +L       +      +E    LDE
Sbjct: 2963 -VNFEQYNILTKHMELIKRYSKL--HEDPYYCFGDLLKDIY---ELPESPFSEKNTPLDE 3016

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                    E     ++Q+ I E+ ++        +  ++ V + T+  AK      VFLV
Sbjct: 3017 LQELRDAFEPLQGLTIQQAIDEINRH--VSFIDENQLNDHVIVTTIDNAKSQAFDTVFLV 3074

Query: 592  DTGSQVFSHKH 602
                    H+ 
Sbjct: 3075 GAHKLGEKHRW 3085


>gi|15615543|ref|NP_243847.1| hypothetical protein BH2981 [Bacillus halodurans C-125]
 gi|10175603|dbj|BAB06700.1| BH2981 [Bacillus halodurans C-125]
          Length = 955

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 64/596 (10%), Positives = 151/596 (25%), Gaps = 88/596 (14%)

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
             +   +     + +  + R    D   +  L  + R         +    L  PL    
Sbjct: 279 EAVLFRVAKFLGVPLQRSKRRSARDSAILHWLDYVLRM---PSRAATSWEQL--PLLELI 333

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
               FK        +  +      A+ GI +   +++  +       F +       +L 
Sbjct: 334 MKLTFKSGASFALAKKSFLATGDVADEGIERLIELVRG-NVWRKRDTFLAYLHQLERLLD 392

Query: 510 AKKGRQQFISRFGN-----EVIDVLDEF------LNFTLR-NEQNSYSSLQELISELEQY 557
             +    +  R           ++  E        +      ++     L      L+ +
Sbjct: 393 DSELSSLYEQRMRESHETWRAQEIAFELHVMTYLKSLVQEKRQELEEKGLMAFTIRLDLF 452

Query: 558 PPTIKRAHS--------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
              +                  V I T       +   +++       F   H  + ++ 
Sbjct: 453 REWLHYQLERKKFTIEKGRERGVSIHTWRDVPLFQGDKLYVTSMNEGTFPAPHSLQGYVQ 512

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                   IP   P                          L Y+      + +       
Sbjct: 513 ERDLYSLPIPYGAPTQHVFKMKQEAYFDQ-----------LFYIA----PEIVFSYIKGM 557

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
             NE           V    +     K+++   ++   E                     
Sbjct: 558 NPNEPFLPSPFLDRYVATETYEWTFEKRMEAPFALTVGEQQEKAAHFLGKGYVINGLSPE 617

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT---------- 779
           I+++    +  K     +   ++  + L+ + ++   +      +               
Sbjct: 618 IERIHQHVERLKTGEEALSEPLSAQHTLSVTALEQYARCPFRFGMERIFAVKEPMKKDVR 677

Query: 780 ---FNRGLIIHKLLQVI-----------FTLPEHKRKNFITSYCTKNAKLWPAKE----- 820
               + G +IH+++Q I             L E  +        +    LW   E     
Sbjct: 678 VSPLDLGHLIHQVIQHIYEEEDLIGQPFHRLSETDKGRIGQKVESVFLTLWEEVEQRYLS 737

Query: 821 ---------YKNLLLSITRLLENPMMTTAMSCDSYSEVSV---SGKINCPKK-----DII 863
                     +  L  + +  E          +   E+++      ++ P +      I 
Sbjct: 738 LSRLELELIKREWLKRLRKWWEAER-KHFWDHEPVKEMAIYSLERSVSLPIRLPSGTTIT 796

Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
           ++G++D+I +  +   I++YKT     +  E +P     QL +Y          K 
Sbjct: 797 LTGKVDRIDVDHEGFTIYDYKTGQAHLKMEEDVPSGLKLQLPLYMIAAGQQLKEKK 852


>gi|297161878|gb|ADI11590.1| RecB family exonuclease [Streptomyces bingchenggensis BCW-1]
          Length = 266

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN---------FITSYCTKNA---KLWPAKE 820
               +    RG ++H +L+ +F  P  +R                        +L+  ++
Sbjct: 16  PEKPSAAATRGTVVHAVLERLFDAPAAERTAPRARSMVPGEWERLLKARPELTELFRTED 75

Query: 821 YKNLLLSITRLLENPM--MTTAMS-------CDSYSEVSVSGKINCPKKDIIISGRIDQI 871
                  + + L +    +    S         +  E+ V  K+      + + G ID++
Sbjct: 76  GAEEPERLEQWLADAERLVEQWFSLEDPTRLEPAERELYVETKLE---GGLTLRGYIDRV 132

Query: 872 SISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            ++    + I +YKT      +        + Q+  Y  +L            L+Y+   
Sbjct: 133 DVAPSGEVRIVDYKTGKAPAPQYAAGA---LFQMKFYALVLWRLRGAVPRRLQLVYLGSG 189

Query: 931 KVFIIPQNKLN 941
            V     ++ +
Sbjct: 190 DVLTYDPDESD 200


>gi|239990573|ref|ZP_04711237.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
           11379]
          Length = 287

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 62/197 (31%), Gaps = 20/197 (10%)

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK---------TNLESLLSDNQTFNRGL 784
                      +    D ++   L+PS +D               +++          G 
Sbjct: 1   RWWGLEEPTRSAVPLRDRDQALSLSPSALDQLANTCTLQWFLGREVKADAPATAAQGFGN 60

Query: 785 IIHKLL-QVIFTLPEHKRKNFITSY------CTKNAKLWPAKEYKNLLLSITRLLENPMM 837
           ++H L  +V            +            +A     +E      ++ R L   ++
Sbjct: 61  VVHVLADEVASGRTPADLDVLMERLDSVWNGLAFDAPWKSEQEKDQARAALERFLHWHVL 120

Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHI 896
                  + SE      +   +  + I G +D++    +   ++ ++KT    P + E  
Sbjct: 121 DRGGRTPTASEHDFDVTLEAGEYAVRIRGSMDRVEEDAEGRAYVVDFKTGKGAPTKDEVA 180

Query: 897 PYTHIAQLSIYEKILKD 913
                 QL++Y+  +++
Sbjct: 181 A---HPQLAVYQLAVRE 194


>gi|300691832|ref|YP_003752827.1| helicase, C_term RecB family exonuclease [Ralstonia solanacearum
           PSI07]
 gi|299078892|emb|CBJ51553.1| putative helicase, C_term RecB family exonuclease [Ralstonia
           solanacearum PSI07]
          Length = 961

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 54/555 (9%), Positives = 137/555 (24%), Gaps = 91/555 (16%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
               ++    R L     + V     + L+   A   LM     +    D  + + +LKS
Sbjct: 329 AQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWIDVVQGDGDTAALLDLLKS 388

Query: 444 PLF---------------------------NFSEDDIFKICTQRHETETVYEYIQKFANC 476
           P                             +     + ++  +R                
Sbjct: 389 PFCLRDADAPSSVAPAWVAELERRVRRHNVSGGWGRLRRLVAERGMNADA-ADADAGDGP 447

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
              +    +  + +   + +          +        +   R G +  D   + L++ 
Sbjct: 448 PTGRLAERLGLLADEAALWRRAGHATLDAWVTLLAGTLDRLRMRTGLQNDDAGRQLLDWL 507

Query: 537 LR--------NEQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            R         +  +  SLQE  + L                   V I+ ++ A+     
Sbjct: 508 DRLRVSVHGSADAGARFSLQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFD 567

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V +V            + +     +  + G+P                    +     E
Sbjct: 568 GVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPD------------RAQRFAQQARDLAE 615

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                         ++++    +    + +    W + +            + +      
Sbjct: 616 VLL--------NQPEVVLTWQRHGGRGEPNRLSGWLERLQRRLAVAGTRVDVPVVL---- 663

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
               A + +    +         +   +           P +  +     L         
Sbjct: 664 ---PALQTARQPTDMPAPAAPALVPSTLSAAAYNSLRRCPYQFFVGRMLRL--------- 711

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPAK 819
              LE +  + +  + G ++H +L                 R   + +   +      A+
Sbjct: 712 -GELEEVSDELEKRDIGELLHAILHRFHRQLLDTPMADPADRLALLQTLTDERFGPLLAE 770

Query: 820 E--YKNLLLSITRLLEN-PMMTTAMSCDSYS----EVSVSGKINCPKKDII-ISGRIDQI 871
           +            ++ +      A   + +     EV     I  P    + + GRID++
Sbjct: 771 DGHALRFYRRWQGVMTSYLAWQAAREAEGWRFEAGEVDAETSIALPGAQALRLRGRIDRV 830

Query: 872 SISQQ-NIFIFEYKT 885
               +  + + +YKT
Sbjct: 831 DTHPEHGVAVLDYKT 845


>gi|239986596|ref|ZP_04707260.1| hypothetical protein SrosN1_04740 [Streptomyces roseosporus NRRL
           11379]
          Length = 281

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 27/198 (13%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
               ++   RG ++H +L+ +F +P   R                 +    L        
Sbjct: 16  PEKPSEAATRGTLVHAVLERLFDVPAADRTAPRARALIPGQWDRLLESKPELSDLFAGDS 75

Query: 833 ENPMMTTAMSCDSY------------------SEVSVSGKINCPKKDIIISGRIDQISIS 874
           E   +T  +                        E+ V  ++      + + G ID++ I+
Sbjct: 76  EGERLTRWLGEAERLVDRWFSLEDPTRLEPAEREMFVETELES---GLRLRGVIDRVDIA 132

Query: 875 Q-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
               + I +YKT      E    P   + Q++ Y  ++            L+Y+    V 
Sbjct: 133 PSGEVRIVDYKTGKAPRPEYSDGP---LFQMTFYALVIWRLKGVVPRRLQLVYLGSGDVM 189

Query: 934 IIPQNKLNKAFAEISTKI 951
                  +     +  K+
Sbjct: 190 TYDPVVAD--LERVERKL 205


>gi|330971230|gb|EGH71296.1| UvrD/REP helicase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 830

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 96/336 (28%), Gaps = 37/336 (11%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +   + + + H++IDE QD S      +R+   +         + R     +
Sbjct: 521 TSPENLKHVSDPMLRPLAHLMIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSS 580

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS   I+   +
Sbjct: 581 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTRVMLSDNFRSHQHIIDAAE 634

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ-VVSQHDSQCNPQQESWTSYFD 334
            +        G    ++  ++            +L    V+ + + +   +        D
Sbjct: 635 HIVRAAPAIPGKKARASGLLQ------------ELLPVKVLDRDEDELAERVAEHYHDGD 682

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           S+           R +  +  +I  D+      +R+             K          
Sbjct: 683 SILLLYRKGSEKARFSARLQALIDADSANGAQNRRIRTLT-----YHSSKGLQADAVFLL 737

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  +S   N  + L       DL           D      +L+      +     
Sbjct: 738 GDCQHLTVSPYKNQVYRLAGLGDASDL--------QPFDTAQKDEVLRPAYVAITRSARH 789

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                     +        A+  I++ +   + +  
Sbjct: 790 CYWYIDEGATSGDAVQMPKASDRIARDKPFFEDLRN 825


>gi|225629586|ref|ZP_03787608.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591560|gb|EEH12578.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 355

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 16/166 (9%)

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            SLQ  +  +++  P IK    +  N VRIMT+H +KGL++P+VFLVDT +   + + I 
Sbjct: 2   PSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRNSESI- 60

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                  + D   +P W  ++   N     + +  K     EY RLLYV +TRA D+L I
Sbjct: 61  -------IFDGTEVPFWCGKNN--NAYCDQVKREKKLEDYNEYLRLLYVALTRAEDELYI 111

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
                   ++   + +WYD++       E+ ++        K E +
Sbjct: 112 LS------KEPVQKGSWYDLITKYGEPYEKKQRDLRPIFKEKVEVL 151


>gi|320011732|gb|ADW06582.1| hypothetical protein Sfla_5183 [Streptomyces flavogriseus ATCC
           33331]
          Length = 279

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 21/195 (10%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
               ++   RG ++H +L+ +F  P   R                 +    L        
Sbjct: 16  PEKPSEAATRGTLVHAVLERLFDAPAADRTVPGAKALIPGQWDRLLESKPELTELFDGDP 75

Query: 833 ENPMMT-TAMSCDSYSEVSVSGKINCPKK--------------DIIISGRIDQISISQ-Q 876
           E   +       +   E   S +     +               + + G ID++ ++   
Sbjct: 76  EGERLAGWLGEAERLVERWFSLEDPTRLEPAERELFVETELDSGLRLRGVIDRVDVAPTG 135

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            + I +YKT               + Q+  Y  ++            L+Y+    V  + 
Sbjct: 136 EVRIVDYKTGKAPRP---EYAEGALFQMKFYALVVWRLKNVVPRRLQLVYLGSGDV--LT 190

Query: 937 QNKLNKAFAEISTKI 951
            + +      +  K+
Sbjct: 191 YDPVPADLERVERKL 205


>gi|84685774|ref|ZP_01013670.1| putative Helicase/Exonuclease [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665867|gb|EAQ12341.1| putative Helicase/Exonuclease [Rhodobacterales bacterium HTCC2654]
          Length = 985

 Score = 85.0 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/470 (8%), Positives = 112/470 (23%), Gaps = 46/470 (9%)

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
            +      +  ++   +      +     ++  + E    +         +L      G 
Sbjct: 443 DMPFPDKASLALWAGEKPDRVEWVEWLAPLVADLSETGTQSLTAHVEQVVSLAERLSAGP 502

Query: 515 QQ------FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                   +    G E   ++DE L       + + S   +L + +              
Sbjct: 503 DDGKSGELWDREAGREARRLVDELLREAPFGGEMTPSDFHDLFAAVLNRGSVRNPDTPYP 562

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              ++I     A+   + +V L       +  +      +   +    G+ +   +    
Sbjct: 563 G--IKIWGTLEARVGGADLVILAGLNEGTWPERPAPDPWMNRDMRQKAGLLLPERRIGLS 620

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            +     +                        ++++ +       +    R    ++   
Sbjct: 621 AHDFQQGLGA---------------------PEVVLTRSLRDDEAETVPSRWINRLMNLM 659

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
               +             D W+        P                  +   K  S  +
Sbjct: 660 NGMSDAGADALKAMRSRGDAWLTLARELDRPGRDHKTDPAPRPSPRPPVEHRPKRLSFTQ 719

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITS 807
                                ++ L        RG  +H   +  I   P+ + ++   +
Sbjct: 720 IGTLIRDPYAIYADKILRLRGIDPLHQSPDAPLRGTAVHAAFERFIRERPKDEARSDARA 779

Query: 808 YCTKNAKLWPAKE----------YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
                A+     +             L       L +       + ++ +E+        
Sbjct: 780 RLLSVAREVFEAQAPWPATRLLWLAKLERIADDFLNDEDERQRDATNALTEIRGEATFGT 839

Query: 858 PKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           P     + G  D+I +     + I++YKT        E     +  QL +
Sbjct: 840 P--PFTVHGTADRIDVLNFGQVAIYDYKTGQPPS---EKQQKAYDKQLLL 884


>gi|110798865|ref|YP_694493.1| ATP-dependent nuclease, subunit B [Clostridium perfringens ATCC
            13124]
 gi|122959148|sp|Q0TV47|ADDB_CLOP1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|110673512|gb|ABG82499.1| ATP-dependent nuclease, subunit B [Clostridium perfringens ATCC
            13124]
          Length = 1158

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 80/708 (11%), Positives = 192/708 (27%), Gaps = 152/708 (21%)

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A  I  ++           +  + KDI V+ R   D      +   +  +Y+I    
Sbjct: 319  EFVAKDILRLVRE---------KQYRFKDISVICR---DVDNYEKVVSAIFAEYEIPYYI 366

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL----FNFSEDDIFK-----IC 457
            + +  +  +  I  + +    I       S    LK+ L          ++       + 
Sbjct: 367  DKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGIEGAELIDELENYVL 426

Query: 458  TQRHETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIA---------------- 495
                + +   E    +            + +  ++ ++++                    
Sbjct: 427  AYGIKGKKWMEEWVNYSSSILKEEEISEEDKQRLERLNDIRENIVTPLDEFNKQCKGKKT 486

Query: 496  ---QFCSPHDFFTLILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQ 541
                    ++F    L       +++  F             EV D+  + L   +    
Sbjct: 487  LKEFATILYEFLDSKLDVMDTIDKYVDYFKENDMAIEAKEYYEVRDIFIDVLEQAVDVLG 546

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            N    L E +  L       +        ++V I  +   K   +  ++++     V   
Sbjct: 547  NEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVNDGVLPS 606

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               ++  +  +  +          S +R  I              E   L+Y   T A +
Sbjct: 607  ASKEEGILSDNDREILLEKGISLASDTRTKIF-------------EEQFLVYTAFTIAEE 653

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L++         K          +     N +   +         ++  A   + +   
Sbjct: 654  YLVVTYPLADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVDDKYEKISAKLPTLNELM 713

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------------------ 756
                +  +  +     + +        K      Y+                        
Sbjct: 714  IAIRKNYDGAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYED 773

Query: 757  ------LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ-------- 791
                  L+ S ++   +              +  + +    + G  +H++L         
Sbjct: 774  NKNKISLSVSRLERYAQCPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFTNEIKE 833

Query: 792  ---VIFTLPEHKRKNFITSYCTKNAK------LWPAKEYKNLLLSITRLLE------NPM 836
                   L +   +N I S      K      L  +K Y        R+L       +  
Sbjct: 834  KDLKWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQ 893

Query: 837  MTTAMSCDSYSEVSV-------SGKINCP-KKDIIISGRIDQIS---ISQQNIF-IFEYK 884
            M  +      +E++        S K++ P  +   ++GRID++    +  +    I +YK
Sbjct: 894  MKRSDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYK 953

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
            T      ++         QL +Y   L    ++   N+++   ++Y  
Sbjct: 954  TGSKKF-DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFR 1000


>gi|163745130|ref|ZP_02152490.1| hypothetical protein OIHEL45_06065 [Oceanibulbus indolifex HEL-45]
 gi|161381948|gb|EDQ06357.1| hypothetical protein OIHEL45_06065 [Oceanibulbus indolifex HEL-45]
          Length = 985

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 63/571 (11%), Positives = 140/571 (24%), Gaps = 52/571 (9%)

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
           + +   + +  +     +Q       +R      L       L    K  +  +      
Sbjct: 364 AALDRWNILPDDSAGMPLQLSPPGRFLRHVAALFLRKLDAEALLTLLKHPLTHSGAGRNF 423

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
             L  + L A  R       D   +    + +   +   +      R     V E     
Sbjct: 424 HQLYTQRLEAEIRRHGLPYPDAEGL----TEIAERTAKRMEDPSGFRDWIAWVGETFPGH 479

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
              G       +     L +      P D   L+     G           V++ L E  
Sbjct: 480 DAPGERPLPDCVAAHLALANRIAAGQPADPDHLLWQHGAGIAA------QGVMENLTEHA 533

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                     Y+ L               R     H ++ I     A+   + +V L   
Sbjct: 534 VHGGAMNAADYADLLG-----ALLSQEEVREADTPHPDIMIWGTMEARVQGADLVILGGL 588

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               +         +   + +  G+ +   +     +     I                 
Sbjct: 589 NEGTWPEAPPPDPWLNRQMREKAGLLLPERRVGLSAHDYQQAI----------------- 631

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
               AS ++ I +   +   +    R    +        E            +  +   +
Sbjct: 632 ----ASPEVWITRAIRSDEAEMVPSRWLNRLGNLLGGLGETGGPEAWKAMQQRGSYWLDQ 687

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                             +     +  K   + IK  I +PY +      +     +  L
Sbjct: 688 VRALEAVERTAPAPRPSPRPPRAARPRKLSVTEIKTLIRDPYAVYAKH--SLKLRAINPL 745

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           +       RG+++H++++    L              + A     +E          L  
Sbjct: 746 VQSPDAPVRGIVLHRIMEDFVKLVARDPARLTHEALLEVAAQVLEEEAPWPAARAMWLAR 805

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKK----------DIIISGRIDQISISQQN-IFIFE 882
              +         +    S  +   +              +SG  D+I  +    + I++
Sbjct: 806 IDRIADWFIARERTRAEFSSPVAFEQGARGSHTFADLGFTLSGFADRIDQTDDGDVLIYD 865

Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           YKT     ++ + +      QL I   +++ 
Sbjct: 866 YKTGTPPGKKEQRLFDK---QLLIEAAMVER 893


>gi|145223651|ref|YP_001134329.1| RecB family exonuclease [Mycobacterium gilvum PYR-GCK]
 gi|315443977|ref|YP_004076856.1| RecB family exonuclease [Mycobacterium sp. Spyr1]
 gi|145216137|gb|ABP45541.1| putative RecB family exonuclease [Mycobacterium gilvum PYR-GCK]
 gi|315262280|gb|ADT99021.1| RecB family exonuclease [Mycobacterium sp. Spyr1]
          Length = 291

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 68/216 (31%), Gaps = 34/216 (15%)

Query: 751 INEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
                 L+PS      +  L              +    RG ++H  L+ ++ LP  +R+
Sbjct: 8   PVRRPALSPSRAGDFKQCPLLYRFRAIDRLPEPSSTAQVRGSVVHAALEQLYALPAAERR 67

Query: 803 N---------FITSYCTKN---AKLWPAKEYKNLLLSITRLL------ENPMMTTAMSCD 844
                            +    A          +L     LL      E+P         
Sbjct: 68  PETALSLVAPAWERVVAEQPSLATDIDPALRAEMLEQARTLLSGYYRLEDPT---RFDPQ 124

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
           S  E  V  ++       ++ G ID+I ++    + + +YKT    P+      +  + Q
Sbjct: 125 S-CEQRVEVELA---DGTLLRGFIDRIDVAPTGEMRVVDYKTGKAPPEARALAEFKAMFQ 180

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
           +  Y   L  S  +      L+Y+++ ++       
Sbjct: 181 MKFYAVALLRSRGSLPARLRLVYLADHQILDYTPTL 216


>gi|283795556|ref|ZP_06344709.1| putative ATP-dependent nuclease [Clostridium sp. M62/1]
 gi|291077225|gb|EFE14589.1| putative ATP-dependent nuclease [Clostridium sp. M62/1]
          Length = 1184

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 84/782 (10%), Positives = 199/782 (25%), Gaps = 158/782 (20%)

Query: 280  IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                +  LS+      R+      + G  +  ++   + +          +       + 
Sbjct: 279  RFRESPELSKIERELFRYGRRGEQKEGKQEEGKRKEEKQNQTGCGAPHRKSGLILHQAEN 338

Query: 340  SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                I  + +   I  ++  +           + +DI V+     D    +        +
Sbjct: 339  PIREI--QFVCAQIERLVKKE---------GYRYRDIAVVTGALSD---YSGELTRQFQE 384

Query: 400  YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
             KI    + +  +  +  ++ L A    +       S    LK+     + +D+ K+   
Sbjct: 385  NKIPCFLDSKKNILGNPMVELLRASMETLTEDFSYESVFRYLKT---GMAVEDVEKLSRL 441

Query: 460  RHETETVYEYIQKFANCGISKFQHV-----IKYIHELIHI--AQFCSPHDFFT------- 505
             +  + +     K  N    +         +  ++E      A F    + F+       
Sbjct: 442  ENYVKALGIRGYKRWNSRWERVYRDGELLNLDELNEFREQIVAPFRPLREVFSDRSSSVR 501

Query: 506  -------LILGAKKGRQQF---ISRFGNEVIDVLD-----------EFLNFTLRNEQNSY 544
                     L      ++      RF       L+           E  +       +  
Sbjct: 502  EMTAALVHFLEEIHAEEKLGEWEKRFSEMGEAELEKEYSQIYGLVMELFDRVAALLGDEV 561

Query: 545  SSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S +E    L+     IK        + V    +   +      +F V     +      
Sbjct: 562  VSRREYAQILDAGFEEIKVGLIPAVVDRVVAGDLTRTRLSHIKALFFVGVNDGIVPSAVR 621

Query: 604  KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            +            GI     +   +   V       ++         LY+ MT+ SD L 
Sbjct: 622  R-----------GGILTEAERRLLKEKGVELAPTAREEGFL--ERLYLYLVMTKPSDTLF 668

Query: 664  ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY-------EWST 716
            +     ++  K     +    V   F      +  +   +                E S 
Sbjct: 669  LTWSQTSAAGKGLRPSSLIGQVKSLFPELTETRSDEFEEAAWSLPAGRRALIGGLRERSA 728

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKL--------------FSPIKNDINEPYILNPSTI 762
               +   LE           +++ ++L               +      +     + + +
Sbjct: 729  SSSQPKFLELYRRFYTDSGYREMTRRLVEASFCSYEDRGIGRTAAGRLYSPILRGSVTRM 788

Query: 763  DTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
            +                  E    +    + G + H  + + F   + +          +
Sbjct: 789  ERYAACAYAHFLNFGLELRERREYELAAADIGNMFHSSIDLFFKTMKEE---------GR 839

Query: 812  NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV---------------------- 849
            + +    ++ K L+      +      T +S  S +E                       
Sbjct: 840  SFRTLSPEDRKELVGRCVSAVTAEYGNTVVSASSRNEYLGRRVERITDRTVWALTEQLKK 899

Query: 850  ------SVSGKINCPK------------KDIIISGRIDQ--ISISQQNIF--IFEYKTHH 887
                                        + + + GRID+  +   +  I+  I +YKT  
Sbjct: 900  GDFEPAGFELTFTPADNLKAMKIPVSRTEAVHLQGRIDRMDLCEDEDKIYVKIIDYKTGQ 959

Query: 888  HVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCL--LIYVSEPKVFIIPQNKLN 941
                E+  + Y    QL +Y        +  +P+K +V      Y     +    ++   
Sbjct: 960  TKF-ELTELFYGLQMQLVVYLDAAMEKEQRKHPDKQVVPAGIFYYNIADPMVEKSEDMDE 1018

Query: 942  KA 943
            + 
Sbjct: 1019 EE 1020


>gi|163757507|ref|ZP_02164596.1| hypothetical protein HPDFL43_18892 [Hoeflea phototrophica DFL-43]
 gi|162285009|gb|EDQ35291.1| hypothetical protein HPDFL43_18892 [Hoeflea phototrophica DFL-43]
          Length = 1068

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 63/582 (10%), Positives = 138/582 (23%), Gaps = 87/582 (14%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL- 445
             +          Y I    +    L        +    +   +  D ++   ++K PL 
Sbjct: 412 RNLARRVVVELQRYGIEANDSGGIPLMSSPQGGLVRLAVQVAFAPGDAVAITALIKHPLA 471

Query: 446 -FNFSEDDIFKI----------------------------------CTQRHETETVYEYI 470
            F   +    ++                                           + +  
Sbjct: 472 RFGLDQQSAQQLAGIVERIALRGGSGEADVDQLETLVAERSEARKKPHAARWLTRISDQD 531

Query: 471 QKFANCGISKFQHVIKYI---------HELIHIAQFCSPHDFFTLILGA--KKGRQQFIS 519
            + A    ++    +  +             +              L             
Sbjct: 532 AEAARDFAARVADALSPLTSILVEAPGQRFSNAVDIGGLAGLTAETLEKICSDETGSLEP 591

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVH 578
            +G+E  +VL   L  T  +      +  E I  L+      + +  +  H    I    
Sbjct: 592 LWGDEAGEVLSNILLETRDSGSTLTITGHEWIGALDALISGRMVKPRTGGHPRAFIWGAL 651

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            A+      + L      V+     +   +  S+    G+     +     +     +  
Sbjct: 652 EARLQHVDTILLGALNEGVWPQAGQEDPFLSRSMKAAMGLEPPERRIGQAAHDFQMAMGA 711

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
            +            V ++RA          N S +  +    W   +     +D      
Sbjct: 712 PQ------------VVLSRA----------NRSGKAPTVASRWLQRLLAVAGSDTATALR 749

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
              +++        + +   P   P  +     Q                  I    +L 
Sbjct: 750 HRGDALLDHVRSLDQATPVSPAIRPEPKPPAQMQPQSYSFSEVATLRRDPYAIYARRVLR 809

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCTKNAKLW 816
                      LE  L+D     RG + H +L+       P  +    +      +    
Sbjct: 810 --------LDPLEPFLTDPGPRERGTLYHAILEQFIASRAPGDRTLEALREIAAAHFLDA 861

Query: 817 PAKEYKNLL--LSITRLLENPMMTT--AMSCDSYSEVSVSGKINCPKKDIIISGRIDQI- 871
              +   L+      +             S    S V     +  P   I ++G  D+I 
Sbjct: 862 ELPDATALIWQSRFDKAAAAIAGWEAGIASGHGRSVVEARASLEMPLAGIRLTGMADRID 921

Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             +    +I +YKT     ++          QL++    L+ 
Sbjct: 922 LRADGTAWIIDYKTGGTPSRKQART--LLDPQLALEAHALRQ 961


>gi|28867288|ref|NP_789907.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850522|gb|AAO53602.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 634

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 63/459 (13%), Positives = 134/459 (29%), Gaps = 87/459 (18%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  VL F  +I    +LL +  V++  R  +    +H+ +DE QDT+ +Q++++ ++   
Sbjct: 203 EKSVLSFP-MIGRLAELLLR--VNSMARDALRLTYSHLFMDEFQDTTQVQYDLVSTIF-- 257

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    +   L AVGD KQ I  +  A                           L  
Sbjct: 258 -------RGTDTVLTAVGDNKQQIMRWAMAMDDPFSEFDADFS---------AKRTSLYN 301

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS+ D++                       I+H  ++   +  V+   Q     + + 
Sbjct: 302 NYRSSPDLVR----------------------IQHILAQALDIAAVEPISQTAGTINEES 339

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                   + FD     + A  LA  +A  I++               +  +D ++LVR+
Sbjct: 340 -------CTVFDFPSPHAEAHNLAVSVASNIAS-------------GKLTPRDFVLLVRQ 379

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
           +        +                   L +   +   + L   ++ +   L    +  
Sbjct: 380 KAG--EYAEVLE--------PAFTAQGLSLRNEAGLVGAIMLQELLVEEVSVLLVSLLRL 429

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC--SP 500
           S                       ++     +            ++            + 
Sbjct: 430 SMTLRAGRYWSECQKWMASLRGVEFDDEIGHSKLTRE-LDACAIWLGANRSSLPTTLKAA 488

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                 ++G   G     SR       + L++ L+    +              ++    
Sbjct: 489 RSLVDEVMG-FVGLGHLKSRHPAYAQGEWLEKVLDAAATH---------LFNCAIKCADW 538

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                     N + +MT+H +KGLE   V  V      +
Sbjct: 539 PSALDTYEGVNAIPLMTIHKSKGLEYHTVIFVGLDDGAW 577


>gi|160915673|ref|ZP_02077881.1| hypothetical protein EUBDOL_01680 [Eubacterium dolichum DSM 3991]
 gi|158432149|gb|EDP10438.1| hypothetical protein EUBDOL_01680 [Eubacterium dolichum DSM 3991]
          Length = 668

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 65/636 (10%), Positives = 158/636 (24%), Gaps = 130/636 (20%)

Query: 83  NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
               + +  +   +    ++++   +  + + R    K                  YE+ 
Sbjct: 122 KAADKILRTQFKLICSNVEIERLLQKVYQCKLRLLNEKRIAEIKMDNIDFAAFYNAYEKF 181

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           KK+  + D  D++     +L        +     Q   +I ID+ Q+ S     +IR L 
Sbjct: 182 KKQKKIYDKADVLQEALHILMYD---KEMLELYQQRFAYITIDDAQELSYAAQMLIRILQ 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                          L A  + + S    + A+       K   +         +  + L
Sbjct: 239 AH----------QAKLCAFVNPQVSCDLTYDADATIFDAWKDDYE--------DYKEVVL 280

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             + R  + +  + ++            E           +                   
Sbjct: 281 TTTHRLNSTLCELTNRFIPSTMTTASTEECEIKYKGFSEWKK------------------ 322

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                   +      + ++   + L R  A  I                      ++  +
Sbjct: 323 -------MYDYALKRVEEKEEVAFLYREDAIAI---------------------PLIEHL 354

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
              +      +  +   ND                  +KD++      ++  +  +F  +
Sbjct: 355 VSNQIAVNFQWNIKSFLNDSI----------------VKDMVNFLSLFINPRNMRAFFEV 398

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
            K    + S   + +I     +   +  Y    A+   +  + ++    E I      + 
Sbjct: 399 HKYMGLDMSNRMLLEIDGIMSDQPQMDIYQSIIASSYKASGKRLLSSYMEDIREVSGGTT 458

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            D    +L                   V         +          +    LE     
Sbjct: 459 FDMLQFVLEKFAYDANMRKERRTIQDPVWIALQILAAKY--------PDPREFLEVLRGL 510

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
           I  + S + + V ++ +  A G +   V ++D  + ++                      
Sbjct: 511 INISSSEHAD-VYVLPLRAAYGRQYSCVCMIDCFAHIYP--------------------- 548

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                  +    RL Y+GM+RA   L +    N    +      
Sbjct: 549 ---------------KFKGNAYEEAFERRLFYMGMSRAVHHLELFTGKNCFGTRLEMSPY 593

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            Y++        +           +    +  E ++
Sbjct: 594 IYELHGKRKEASKPKATSSRLREQDFKRGVRIEHAS 629


>gi|226306669|ref|YP_002766629.1| hypothetical protein RER_31820 [Rhodococcus erythropolis PR4]
 gi|226185786|dbj|BAH33890.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 291

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 77/229 (33%), Gaps = 42/229 (18%)

Query: 751 INEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR- 801
                 L+PS      +  L            +  +   RG ++H  L+ +F LP   R 
Sbjct: 15  PRSRPALSPSRAGDYKQCPLLYRFRAVDRIPETPTRAQVRGTVVHAALEALFALPTGHRV 74

Query: 802 KNFITSYCT-----------KNAKLWPAKEYKNLLLSITRL------LENPMMTTAMSCD 844
            +                  + A L P  E    L  + +L      LE+P        +
Sbjct: 75  PDRAAELVRPAWERVSAESPEAADLIPEDELDAFLGEVGKLVATYYTLEDPT---RFDAE 131

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
           +  EV V  ++      + + G +D+I ++    + + +YKT     +  E      + Q
Sbjct: 132 A-CEVYVETELE---NGVRLRGFVDRIDVAPTGEVRVVDYKTGKAPREFTESKA---LFQ 184

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVF--IIPQNKL---NKAFAEI 947
           +  Y  +L  +         LIY++   +       ++L    +  + I
Sbjct: 185 MKFYALVLLRTRGIVPAQLRLIYLASGSILTYAPDHDELIRFERTLSAI 233


>gi|183983094|ref|YP_001851385.1| hypothetical protein MMAR_3095 [Mycobacterium marinum M]
 gi|183176420|gb|ACC41530.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 293

 Score = 84.6 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 34/218 (15%)

Query: 749 NDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
             +     L+PS      +  L              +    RG ++H  L+ ++ LP  +
Sbjct: 9   ASVYIRPALSPSRAADFKQCPLLYRFRAIDRLPEKPSTAQLRGSVVHAALEQLYALPAVQ 68

Query: 801 R-KNFITSYCT-----------KNAKLWPAKEYKNLLLSITRLL------ENPMMTTAMS 842
           R  +   S                A    A +   LL     LL      E+P       
Sbjct: 69  RGPDTARSLVESAWEQVIAGELDLAGELAADQQAQLLEDARALLSGYYRLEDPR---RFD 125

Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI 901
             S  E  V  ++       ++ G ID+I ++    + + +YKT    P       +  +
Sbjct: 126 PQS-CEQRVEVELA---DGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAM 181

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            Q+  Y   L  S         LIY+++ +V     ++
Sbjct: 182 FQMKFYGVALFRSRGVLPSRLRLIYLADGQVLDYSPDR 219


>gi|15645703|ref|NP_207880.1| hypothetical protein HP1089 [Helicobacter pylori 26695]
 gi|2314241|gb|AAD08136.1| predicted coding region HP1089 [Helicobacter pylori 26695]
          Length = 778

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 58/489 (11%), Positives = 137/489 (28%), Gaps = 82/489 (16%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLETSDLDLSGSAL----LDLENITLALLEQQSSKEKAPLKEAHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   + +VD     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L K+ K         L Y+    
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EITLSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++  + H +       L       ++   E    
Sbjct: 480 ----------------ESETSKASNMLLELNLHIEPIKDAYTLFAPSPLKDYQEEEIKAA 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++                 +   L    +   +       S  D              
Sbjct: 524 IPKDFSF----------SASSLNAFLTCKRRFYYHYIKRFKESPKDENNS---------- 563

Query: 778 QTFNRGLIIHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL--LLSITRLLE 833
                G ++H+LL          H  +  +         + P +    L  L  I    +
Sbjct: 564 ---AVGSLLHELLKEAYEKDKTPHALEERLIWLLETRENITPKERLDTLVVLKKIQAFYK 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT------- 885
                   + +  + + +        + +I  GRID+I  +    I + +YK        
Sbjct: 621 KER--ERFNAEI-TILDLEKSFETIIQGVIFKGRIDRIDKTADNEIILLDYKFKSDLKLD 677

Query: 886 -------HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                      P EI  I   +  Q++IY   LK+    + +      + + ++    + 
Sbjct: 678 SMSKTQRGGLSPIEIAQISTDY--QMAIYAFALKNLGYKEPIKAFFYDLRKGELLEEEEL 735

Query: 939 KLNKAFAEI 947
            L      +
Sbjct: 736 ILQAKMDHL 744


>gi|167748813|ref|ZP_02420940.1| hypothetical protein ANACAC_03587 [Anaerostipes caccae DSM 14662]
 gi|167651783|gb|EDR95912.1| hypothetical protein ANACAC_03587 [Anaerostipes caccae DSM 14662]
          Length = 1117

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 72/682 (10%), Positives = 179/682 (26%), Gaps = 123/682 (18%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              +R I   I +++  +           + KD++VL     D             D+ I
Sbjct: 314 KEESRYILGCIEHLVRKE---------GYRYKDLVVLT---GDMETYQPELEKCFEDFGI 361

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC----- 457
               +    L ++  ++ +++  + I            LKS       ++   +      
Sbjct: 362 PCFIDGNRALRNNPCVETILSALKMIQMDFSYEMVFRYLKSGFSALEPEETDLLENFVIA 421

Query: 458 -----TQRHETETVYEYIQKFANCGISKFQH-------------------VIKYIHELIH 493
                  R           K     I++ +                    V++ +  L  
Sbjct: 422 SGIRGYARWNRPFKSRAFTKEEMKQINQSRETFMKETGPFKEGIRKRGITVLERLTHLHG 481

Query: 494 IAQFCSPHDFFTLILGAKK--GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                             +  G       +     +VL+  ++           S  E  
Sbjct: 482 FFLTLDIQGQMERKKEEFEAAGDLAMAKTYDQIYGEVLN-IMDQMAEILGEEELSFDEFC 540

Query: 552 SELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + LE     +         ++V +  +   +     V+F       V          +  
Sbjct: 541 AVLETGLSEMTVGVIPPGLDQVIVGDIERTRVEGVKVLFFAGINEGVVPKPSKGGGLVTD 600

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           S  ++           + N    +                LY+ M++  ++L +   S  
Sbjct: 601 SQREELLKAGISLAPGAANQAYMEQYY-------------LYLAMSKPDEKLYLTYASMD 647

Query: 671 SNEKKSNQRTWYDMVYDSFHND--ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
           S+ +          +   F     +   +     S+++      E      E  P +   
Sbjct: 648 SSGESKAPSYLIGRIEKLFPGLKKDLDLQETPVYSVSEARERFVEKLQELGEEKPDQEMA 707

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINE--------------PYILNPSTIDTKGKTNL---- 770
            + ++++E+K+             E                  + + ++           
Sbjct: 708 ALYEVLNERKLVSPYLDAYFYSNEEKNLDRHLTTLLYGKELENSVTRVEKFSGCAFAHFL 767

Query: 771 -------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS--YCT---KNAKLWPA 818
                  E L+ +    + G + H+ LQ +        ++      +     + A     
Sbjct: 768 QYGLRLRERLVHEILPMDMGQVFHRTLQFVGQEGSWDWEDDRERDRFVDSMVERALDEDP 827

Query: 819 KEYKNLLLSITRLLENPMMTTAMSCDSYS-EV--------SVSGKINCPKKDII------ 863
            + +    S         +        ++ E             ++     D +      
Sbjct: 828 DKKEIFESSSRNQYTKERIRRMAKRAVWAVEQQIKRGEFTPYEYELGFSADDGLSCANLS 887

Query: 864 --------ISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
                    +G ID++     ++N++  I +YK+  ++  +   I      QL +Y   +
Sbjct: 888 LKDGTKMKFTGVIDRVDCYEDEENLYLKIIDYKSG-NMQFDFTKILNGLQVQLVVYMNAI 946

Query: 912 KDS----YPNKS-LVCLLIYVS 928
            +     YP K  +   + Y  
Sbjct: 947 LELEGKKYPEKRMVPAGMFYFH 968


>gi|304317473|ref|YP_003852618.1| ATP-dependent nuclease subunit B-like protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778975|gb|ADL69534.1| ATP-dependent nuclease subunit B-like protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 1053

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 97/878 (11%), Positives = 229/878 (26%), Gaps = 174/878 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
             Y    YEE K K  ++D +D+ I   +L +               +  I++D   +  
Sbjct: 153 LAYFYESYEEYKIKRKLIDVDDISIKAVELFQN--------TNYFNNVGLIIVDGFINID 204

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +  ++I         G+   S+   ++                    +  K    +   
Sbjct: 205 YVNMKLI---------GEMAKSNRYDIYI------------------NIPFKNEFNESFI 237

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
             G    + EL  +         V + ++ + E    + + +T      +   G+  +++
Sbjct: 238 RNGIIKDLCELGFN---------VNNDIYEMIEVNHDVKKVATYIYSGETVLNGEDLSIK 288

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           +                       +S   E      AR I   I                
Sbjct: 289 I----------------------MNSPSIEHEVRETARLIKRKIV-------------FD 313

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I    I V ++   D          + ++  I V  N    L+      D+  L  + L
Sbjct: 314 KINPDRIAVFIKNIDDYRT---QIIDIFDEMNIPVKINRGIKLSTMPITNDIYNLISYKL 370

Query: 430 SQEDDLSFVCMLKSPL---FNFSED--DIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
           +  D  SFV ++ S     +  S+   +I  + +     +  +E     A          
Sbjct: 371 N-HDYESFVNIMTSKFLVPYEISKRSREIIDLLSGIDRDKDNFEDEFVTAMKDDKSLNAT 429

Query: 485 IKYIHEL------IHIAQFCSPHDFFTLILGAKKGRQ------QFISRFGNEVID---VL 529
            +++              +    +F   +L      +                 D    +
Sbjct: 430 FEFLKRYVDVFINFREVPYKDTKEFVESVLKVIDLLEIDFNIKALFDMGIIRSSDFISNV 489

Query: 530 DEF----------LNFTLRNEQNSYSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVH 578
                        L    +  + S   ++   ++ L+          + +   VRI++  
Sbjct: 490 KALETIKQILNKELEIKKQYGEPSIDDIENFQNDILDMLSNFDVSIRNLDFEGVRIISPD 549

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHI--KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            A+G    VVF++     V            +      +      + +            
Sbjct: 550 LARGQMYDVVFILGVNEGVLPSTKSINPIFDLSDEEYLEKHGIYMLSRKWEFEREKVRFN 609

Query: 637 KHLKKSTQE---------EYNR----------LLYVGMTRASDQLIICKHSNTSNEKKSN 677
             +  + +E         E             L  +   ++ ++LI              
Sbjct: 610 ACIASALKEVYVSYRTTDEDGCNMIKSPFIDDLQNLFDEKSKERLIAPIVYMKDRFAFEC 669

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM--D 735
                D       + +  K+    N+I  +      + T              K+    +
Sbjct: 670 DAASKDEALLFMIDSKWNKRQGDANTIYSNILENDLYLTKSYSYINFSASIEKKRRANCE 729

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD-----------NQTFNRGL 784
                  +             L+ S++++      +  +                 + G 
Sbjct: 730 VDNHMGIISKDANLKELSDIHLSASSLNSYVVCPFKFFIETLLNLHVSDEFIESKKSIGS 789

Query: 785 IIHKLL-------QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL----- 832
           + H++L         ++ + E +    I     K   +     +  +      ++     
Sbjct: 790 LYHEVLMKYYKDNLDLYDVNEDRLGEIIDESFEKITGIENDIIFDKIKQEFYNVVFQLVK 849

Query: 833 ENPMMTTAMSCDSYSEVS---VSGKINCPK--KDIIISGRIDQISISQ-------QNIFI 880
           ++          + +E+       K          I  G+ID+I + +           I
Sbjct: 850 DDISNRLYYYNKTGAELIPSIFEKKFEMKDHYGGNIFHGKIDRIDLERNIDGKFTGKYVI 909

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
           ++YK+       I         QL  Y   +++    +
Sbjct: 910 YDYKSGGI--DGIRQCIEGLDFQLPTYYMAVENILKEE 945


>gi|15609256|ref|NP_216635.1| hypothetical protein Rv2119 [Mycobacterium tuberculosis H37Rv]
 gi|15841611|ref|NP_336648.1| hypothetical protein MT2179 [Mycobacterium tuberculosis CDC1551]
 gi|31793299|ref|NP_855792.1| hypothetical protein Mb2143 [Mycobacterium bovis AF2122/97]
 gi|121638001|ref|YP_978225.1| hypothetical protein BCG_2136 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148661934|ref|YP_001283457.1| hypothetical protein MRA_2134 [Mycobacterium tuberculosis H37Ra]
 gi|148823330|ref|YP_001288084.1| hypothetical protein TBFG_12151 [Mycobacterium tuberculosis F11]
 gi|167967471|ref|ZP_02549748.1| hypothetical protein MtubH3_05317 [Mycobacterium tuberculosis
           H37Ra]
 gi|215403503|ref|ZP_03415684.1| hypothetical protein Mtub0_07428 [Mycobacterium tuberculosis
           02_1987]
 gi|215411823|ref|ZP_03420615.1| hypothetical protein Mtub9_10924 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215431043|ref|ZP_03428962.1| hypothetical protein MtubE_10285 [Mycobacterium tuberculosis
           EAS054]
 gi|215446344|ref|ZP_03433096.1| hypothetical protein MtubT_10528 [Mycobacterium tuberculosis T85]
 gi|218753841|ref|ZP_03532637.1| hypothetical protein MtubG1_10544 [Mycobacterium tuberculosis GM
           1503]
 gi|219558092|ref|ZP_03537168.1| hypothetical protein MtubT1_12642 [Mycobacterium tuberculosis T17]
 gi|224990495|ref|YP_002645182.1| hypothetical protein JTY_2130 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798819|ref|YP_003031820.1| hypothetical protein TBMG_01861 [Mycobacterium tuberculosis KZN
           1435]
 gi|254232279|ref|ZP_04925606.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254364926|ref|ZP_04980972.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254551151|ref|ZP_05141598.1| hypothetical protein Mtube_11916 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187107|ref|ZP_05764581.1| hypothetical protein MtubCP_13883 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201228|ref|ZP_05768719.1| hypothetical protein MtubT4_14214 [Mycobacterium tuberculosis T46]
 gi|289443622|ref|ZP_06433366.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289447739|ref|ZP_06437483.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289554095|ref|ZP_06443305.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289570232|ref|ZP_06450459.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289745392|ref|ZP_06504770.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289754227|ref|ZP_06513605.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289758237|ref|ZP_06517615.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289762281|ref|ZP_06521659.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294993528|ref|ZP_06799219.1| RecB family exonuclease [Mycobacterium tuberculosis 210]
 gi|297634704|ref|ZP_06952484.1| RecB family exonuclease [Mycobacterium tuberculosis KZN 4207]
 gi|297731692|ref|ZP_06960810.1| RecB family exonuclease [Mycobacterium tuberculosis KZN R506]
 gi|298525615|ref|ZP_07013024.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776366|ref|ZP_07414703.1| hypothetical protein TMAG_00304 [Mycobacterium tuberculosis
           SUMu001]
 gi|306780145|ref|ZP_07418482.1| hypothetical protein TMBG_00665 [Mycobacterium tuberculosis
           SUMu002]
 gi|306784889|ref|ZP_07423211.1| hypothetical protein TMCG_00212 [Mycobacterium tuberculosis
           SUMu003]
 gi|306789256|ref|ZP_07427578.1| hypothetical protein TMDG_00596 [Mycobacterium tuberculosis
           SUMu004]
 gi|306793585|ref|ZP_07431887.1| hypothetical protein TMEG_02484 [Mycobacterium tuberculosis
           SUMu005]
 gi|306797974|ref|ZP_07436276.1| hypothetical protein TMFG_01078 [Mycobacterium tuberculosis
           SUMu006]
 gi|306803854|ref|ZP_07440522.1| hypothetical protein TMHG_01306 [Mycobacterium tuberculosis
           SUMu008]
 gi|306808426|ref|ZP_07445094.1| hypothetical protein TMGG_00674 [Mycobacterium tuberculosis
           SUMu007]
 gi|306968249|ref|ZP_07480910.1| hypothetical protein TMIG_00784 [Mycobacterium tuberculosis
           SUMu009]
 gi|306972477|ref|ZP_07485138.1| hypothetical protein TMJG_00379 [Mycobacterium tuberculosis
           SUMu010]
 gi|307080187|ref|ZP_07489357.1| hypothetical protein TMKG_00379 [Mycobacterium tuberculosis
           SUMu011]
 gi|307084767|ref|ZP_07493880.1| hypothetical protein TMLG_03740 [Mycobacterium tuberculosis
           SUMu012]
 gi|313659027|ref|ZP_07815907.1| RecB family exonuclease [Mycobacterium tuberculosis KZN V2475]
 gi|2253059|emb|CAB10709.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13881861|gb|AAK46462.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31618891|emb|CAD96996.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121493649|emb|CAL72124.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124601338|gb|EAY60348.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134150440|gb|EBA42485.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148506086|gb|ABQ73895.1| hypothetical protein MRA_2134 [Mycobacterium tuberculosis H37Ra]
 gi|148721857|gb|ABR06482.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224773608|dbj|BAH26414.1| hypothetical protein JTY_2130 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253320322|gb|ACT24925.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289416541|gb|EFD13781.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420697|gb|EFD17898.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289438727|gb|EFD21220.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289543986|gb|EFD47634.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289685920|gb|EFD53408.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289694814|gb|EFD62243.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289709787|gb|EFD73803.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713801|gb|EFD77813.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495409|gb|EFI30703.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308215212|gb|EFO74611.1| hypothetical protein TMAG_00304 [Mycobacterium tuberculosis
           SUMu001]
 gi|308326972|gb|EFP15823.1| hypothetical protein TMBG_00665 [Mycobacterium tuberculosis
           SUMu002]
 gi|308330406|gb|EFP19257.1| hypothetical protein TMCG_00212 [Mycobacterium tuberculosis
           SUMu003]
 gi|308334241|gb|EFP23092.1| hypothetical protein TMDG_00596 [Mycobacterium tuberculosis
           SUMu004]
 gi|308338042|gb|EFP26893.1| hypothetical protein TMEG_02484 [Mycobacterium tuberculosis
           SUMu005]
 gi|308341727|gb|EFP30578.1| hypothetical protein TMFG_01078 [Mycobacterium tuberculosis
           SUMu006]
 gi|308345217|gb|EFP34068.1| hypothetical protein TMGG_00674 [Mycobacterium tuberculosis
           SUMu007]
 gi|308349520|gb|EFP38371.1| hypothetical protein TMHG_01306 [Mycobacterium tuberculosis
           SUMu008]
 gi|308354150|gb|EFP43001.1| hypothetical protein TMIG_00784 [Mycobacterium tuberculosis
           SUMu009]
 gi|308358088|gb|EFP46939.1| hypothetical protein TMJG_00379 [Mycobacterium tuberculosis
           SUMu010]
 gi|308362022|gb|EFP50873.1| hypothetical protein TMKG_00379 [Mycobacterium tuberculosis
           SUMu011]
 gi|308365670|gb|EFP54521.1| hypothetical protein TMLG_03740 [Mycobacterium tuberculosis
           SUMu012]
 gi|323719332|gb|EGB28473.1| hypothetical protein TMMG_01396 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326903734|gb|EGE50667.1| hypothetical protein TBPG_01616 [Mycobacterium tuberculosis W-148]
 gi|328458580|gb|AEB04003.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 278

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 34/219 (15%)

Query: 748 KNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            +       L+PS      +  L            + +    RG ++H  L+ ++ LP  
Sbjct: 5   PDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAG 64

Query: 800 KR-KNFITSYCTKN-----------AKLWPAKEYKNLLLSITRL------LENPMMTTAM 841
            R  +   S   +            A      +   LL     L      LE+P      
Sbjct: 65  LRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPT---RF 121

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900
                 E  V  ++       ++ G ID+I ++    + + +YKT    P       +  
Sbjct: 122 DPQC-CEQRVEVELA---DGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKA 177

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
           + Q+  Y   L  S         LIY+++ ++     ++
Sbjct: 178 MFQMKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDR 216


>gi|153008154|ref|YP_001369369.1| double-strand break repair protein AddB [Ochrobactrum anthropi ATCC
           49188]
 gi|151560042|gb|ABS13540.1| Double-strand break repair protein AddB [Ochrobactrum anthropi ATCC
           49188]
          Length = 1052

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 73/688 (10%), Positives = 160/688 (23%), Gaps = 87/688 (12%)

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
           F  P+       D+  T+R     +  +   +   + V     +     ++W        
Sbjct: 292 FGHPQFGLRKLLDAMQTLRADVEHLDDMPASKRLRERVVSEALRPAETTDAWGQLARDPD 351

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            + +A   A +    I      +   +          D             +        
Sbjct: 352 MQPTALRQAAQTIDLIETANEREEALTVALVLRDAINDEGKTAALVTADRNLARRVVGEL 411

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
             + I    +    L D      L  L   + +  D ++ + ++K PL       I +  
Sbjct: 412 ARFGIDADDSGGRHLRDVETTTLLRLLVETVFNPGDPVALLALVKHPLLRLEAPRIERRL 471

Query: 458 TQRHETETVYE------------------YIQKFANCGISKFQHVI--KYIHELIHIAQF 497
                    +                     +         +   +    I    ++ + 
Sbjct: 472 AAETLELIAFRGGTGRASVLDLPAFFDRRLEESAGQPWQPAWHDTVTPDMIAAARNLCES 531

Query: 498 CS--PHDFFTLILGAKKGRQQFISRFGNEVIDVL--DEFLNFTLRNEQNSYSSLQELISE 553
            S         ++  ++     I+R   E ++ L  +E  +            L   +  
Sbjct: 532 LSNAMAPLVPFVIAGRRTEIGEIARATVEALENLARNEKASIAPFYSGERGEQLATFLRG 591

Query: 554 L-------------------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
           L                           + H   H  + I     A+      V +    
Sbjct: 592 LVSSEAGLDFEASEWPAVLDALMAGETVKPHPGGHPRLFIWGALEARLQTMDTVVIGGLN 651

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              +  +                  +  P          +    L     +    + +V 
Sbjct: 652 EGSWPARTRNDPF------------MSRPMKSMIALDPPERRTGLAAHDFQMALGMDHVV 699

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +TR+            S+   +    W   +      D   +  K      +      + 
Sbjct: 700 LTRSQR----------SDNAPTVPSRWLQRLETVLGADVTAEMRKRGVRFIQWSREIDQA 749

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                   P      + +         +        I    IL            LE L+
Sbjct: 750 PDVPFVKRPQPAPPVLARPKHFSVTEIETLRRDPYAIFAKKIL--------KLRPLEPLI 801

Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLSIT---- 829
            D     RG + H +L             +           L+   +    + ++     
Sbjct: 802 RDPAAAERGTLFHDILGHFTQEAIDPLAPDAAERLMELGRVLFADMDLPTEIEAVWWPRF 861

Query: 830 -----RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEY 883
                + L             ++E+S   +       I +SGR D+I  +      I +Y
Sbjct: 862 TALIPQFLAWERERAYNVQTRFAEISSDKR-EVEGLGITLSGRADRIDLMRDGTAEIIDY 920

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           KT        +        QL++   +L
Sbjct: 921 KTGSTP--SPKQAHVLLSPQLALEAALL 946


>gi|330901567|gb|EGH32986.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 466

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/467 (11%), Positives = 115/467 (24%), Gaps = 104/467 (22%)

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            AKGL+ P+VFL    S          +    +            +S+        LI+ 
Sbjct: 1   KAKGLQYPLVFLPFICSSKPVDGSRLPLQFHDADG----------KSQISLQPTEALIQQ 50

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
                  E  RLLYV +TR+     +   ++      +        +         + + 
Sbjct: 51  ADDERLAEDLRLLYVALTRSEHACWL-GVADLKRGNANTSMLHRSALGYLLGGGAVLAES 109

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD---------EQKIPKKLFSPIKN 749
              N   +      E     P   P +   +  +             +       +    
Sbjct: 110 AELNVWLRHLAQGCEAIALQPVPEPTDERFSAPRNEAALVKLLVPKRRAAENWWIASYSA 169

Query: 750 --------DINEPYILNPSTIDTKGKTNLESLLSD------------NQTFNRGLIIHKL 789
                      +    +P          L+                  +  N G  +H L
Sbjct: 170 LRIGDTVTAGADESPDSPQAQKLFDDERLDPEAPRDILTSGGDIHRFPRGPNPGTFLHGL 229

Query: 790 LQV-------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-LENP------ 835
           L+        I      K ++ +   C +           + L  +  + L         
Sbjct: 230 LEWAGNEGFAITAHAPEKLQDAVARRCNRRGWAGWINTLSDWLQHMLNMPLRLSPDAAPV 289

Query: 836 MMTTAMSCDSYS-EVSV---SGKINCPKKDIIIS----------------------GRID 869
            +      + Y  E+     S  +N  + D ++                       G ID
Sbjct: 290 ALGELDQPNQYRVEMEFWFASNNVNVAQMDALVRRFTHDNAPRAATETVSLNGMFKGFID 349

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEH---------IPYTHIAQLSIYEKILKDS------ 914
                +   ++ +YK++     +  +         +   +  Q  +Y   L         
Sbjct: 350 LTFEHEGRYYVADYKSNWLGSDDSAYTQLAMETAILDNRYDLQYVLYLLALHRQLKTRMA 409

Query: 915 ---YPNKSLVCLLIYVSE------PKVFIIPQNKLNKAFAEISTKIP 952
              Y       L +++           F  P  +L ++   +    P
Sbjct: 410 DYDYDQHMGGALYLFLRGSRSASQGAYFTRPPRELIESLDLLFQGKP 456


>gi|325066922|ref|ZP_08125595.1| DNA/RNA helicase [Actinomyces oris K20]
          Length = 440

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 53/387 (13%), Positives = 89/387 (22%), Gaps = 79/387 (20%)

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           R     ++ VL R R     +            +         +     + D+ AL    
Sbjct: 25  RWSPGAEMAVLCRTRAQMEPVAAELEA----AGLPYTIIGLGGMLYVPEVADVRALLTTA 80

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICT--------QRHETETVYEYIQKFANCGISK 480
              E     V +L    F     D+  +               +         A      
Sbjct: 81  SDPERGDRVVRLLTG--FGIGARDLRVLAALARELTRTATESGKEGPGAHGDRAEADSPL 138

Query: 481 FQHVIKYIHELIH-----------------------------------IAQFCSPHDFFT 505
               +  +                                         A      D   
Sbjct: 139 LSEALDALLRWHEDGVQEEQEESAAARDLTEAGRAVALRTARAIRRIREAVSLPLPDLVA 198

Query: 506 LILGAKKGRQQFISRFG-NEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIK- 562
           L         +  +R G       LD F              +L   +  L+        
Sbjct: 199 LAEQVLDLDIEIAARVGHPMGHRALDSFHETARAFAADTDAPTLTGFLEWLDAAEEHEDA 258

Query: 563 ---RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH----------------KHI 603
                   +   V+++TVH AKGLE  VV +     QVF                     
Sbjct: 259 MSAPEVEPSPGAVQLLTVHAAKGLEWDVVAVPGMDEQVFPSYTSAVKDDLRVAETGWMGS 318

Query: 604 KKMHIMPSLNDDPGIPIWI--------PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
                 P   D   +P +                  +S   + L + +  E  RL YV  
Sbjct: 319 TSTFPFPLRADAGDLPPFTVGDLDPAVTDKPLLTETMSAYKEALGRQSLREERRLAYVAF 378

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWY 682
           TRA  +L++     +    K  + + +
Sbjct: 379 TRARHELLLTGSHLSKTASKPRRPSRF 405


>gi|227488933|ref|ZP_03919249.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091117|gb|EEI26429.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 280

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 70/224 (31%), Gaps = 39/224 (17%)

Query: 755 YILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR----- 801
             L+PS +    K  L                   +G ++H +L+ +  LP  +R     
Sbjct: 19  VALSPSRVSQYKKCPLSFRFGAIDKIPTETKDYQLKGTLVHAVLEHLMGLPPEERTYPTA 78

Query: 802 -----KNFITSYCTKNAKLWPAKEYKNLLLSITR--------LLENPMMTTAMSCDSYSE 848
                  +               E+K +   +          ++ENP            E
Sbjct: 79  VKLIVPTWEKMKAEDPGNAEVVPEHKEMDFFVQARGLIKGYFMMENPQGL----ETDRME 134

Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
             VS  +   + D+ + G ID++ ++   +  I +YKT               +AQ+  Y
Sbjct: 135 EFVSTTL---RDDVPLRGFIDRVDVNADGMVRIVDYKTGKKPSPRFADDA---MAQMKFY 188

Query: 908 EKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
             +    Y        L+Y++      +  +       E + ++
Sbjct: 189 ALVWWCLYGVIPAQLRLMYLAVGDDLTLSPD--EATLEEFAAEL 230


>gi|239940108|ref|ZP_04692045.1| hypothetical protein SrosN15_03853 [Streptomyces roseosporus NRRL
           15998]
          Length = 277

 Score = 84.6 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 27/198 (13%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
               ++   RG ++H +L+ +F +P   R                 +    L        
Sbjct: 12  PEKPSEAATRGTLVHAVLERLFDVPAADRTAPRARALIPGQWDRLLESKPELSDLFAGDS 71

Query: 833 ENPMMTTAMSCDSY------------------SEVSVSGKINCPKKDIIISGRIDQISIS 874
           E   +T  +                        E+ V  ++      + + G ID++ I+
Sbjct: 72  EGERLTRWLGEAERLVDRWFSLEDPTRLEPAEREMFVETELES---GLRLRGVIDRVDIA 128

Query: 875 Q-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
               + I +YKT      E    P   + Q++ Y  ++            L+Y+    V 
Sbjct: 129 PSGEVRIVDYKTGKAPRPEYSDGP---LFQMTFYALVIWRLKGVVPRRLQLVYLGSGDVM 185

Query: 934 IIPQNKLNKAFAEISTKI 951
                  +     +  K+
Sbjct: 186 TYDPVVAD--LERVERKL 201


>gi|169343384|ref|ZP_02864388.1| ATP-dependent nuclease, subunit B [Clostridium perfringens C str.
            JGS1495]
 gi|169298470|gb|EDS80556.1| ATP-dependent nuclease, subunit B [Clostridium perfringens C str.
            JGS1495]
          Length = 1158

 Score = 84.6 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 82/708 (11%), Positives = 188/708 (26%), Gaps = 152/708 (21%)

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A  I  ++           +  + KDI V+ R   D      +   +  +Y+I    
Sbjct: 319  EFVAKDILRLVRE---------KQYRFKDISVICR---DVDNYEKVVSAIFAEYEIPYYI 366

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF-------------------- 446
            + +  +  +  I  + +    I       S    LK+ L                     
Sbjct: 367  DKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGIEGAELIDELENYVL 426

Query: 447  --NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS----- 499
                      +       +    E I +     + +   + + I   +            
Sbjct: 427  AYGIKGKKWMEEWVNYSSSILKEEEISEEDKQRLERLNDIRETIVAPLDEFNKQCKGKKT 486

Query: 500  -------PHDFFTLILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQ 541
                    ++F    L       +++  F             EV D+  + L   +    
Sbjct: 487  LKEFATILYEFLDSKLDVMDTIDKYVEYFKENDMAIEAKEYSEVRDIFIDVLEQAVDVLG 546

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            N    L E +  L       +        ++V I  +   K   +  ++++     V   
Sbjct: 547  NEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVNDGVLPS 606

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               ++  +  +  +          S +R  I              E   L+Y   T A +
Sbjct: 607  ASKEEGILSDNDREILLEKGISLASDTRTKIF-------------EEQFLVYTAFTIAEE 653

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L++         K          +     N +   +         ++  A   + +   
Sbjct: 654  YLVVTYPLADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVDDKYEKISAKLPTLNELM 713

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------------------ 756
                +  +  +     + +        K      Y+                        
Sbjct: 714  IAIRKNYDGAEIEDYWKYVYDWYLREPKWKERIEYVKKGLEYTNLENNISKEKAKKLYED 773

Query: 757  ------LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ-------- 791
                  L+ S ++   +              +  + +    + G  +H++L         
Sbjct: 774  NKNKISLSVSRLERYAQCPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFTNEIKE 833

Query: 792  ---VIFTLPEHKRKNFITSYCTKNAK------LWPAKEYKNLLLSITRLLE------NPM 836
                   L +   +N I S      K      L  +K Y        R+L       +  
Sbjct: 834  KDLKWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQ 893

Query: 837  MTTAMSCDSYSEVSV-------SGKINCP-KKDIIISGRIDQIS---ISQQNIF-IFEYK 884
            M  +      +E++        S K++ P  +   ++GRID++    +  +    I +YK
Sbjct: 894  MKRSDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYK 953

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
            T      ++         QL +Y   L    ++   N+++   ++Y  
Sbjct: 954  TGSKKF-DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFR 1000


>gi|109947353|ref|YP_664581.1| hypothetical protein Hac_0793 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714574|emb|CAJ99582.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 778

 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/483 (9%), Positives = 131/483 (27%), Gaps = 76/483 (15%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            ++K + +L +     S        L  +      +    ++    L E  +  +     
Sbjct: 314 ELVKILEDLENNDLNLSASAL----LDLENLTLSLLEEQNSKDKASLKEVHSQIMHQYHL 369

Query: 543 SYSSLQELIS----ELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              +L+         L             ++  ++R+M     +G++   + + D     
Sbjct: 370 LKDTLKNYSFKDLLYLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIADFNESC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             +     + +  +L     +P  + +   + +    L                     +
Sbjct: 430 VPNLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLF--------------------K 469

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            S ++++    + +++  +       ++    + +       L  +    ++   +    
Sbjct: 470 NSKEMVLSCIESETSKVSN------MLLELDLNLEPIKDAYTLFATSPLKDYQEEDIKAT 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P+        +   L       ++ +                          +    D 
Sbjct: 524 IPKGFCF----SASSLNTFLACKRRFYYHY-------------------IKCFKESSKDE 560

Query: 778 QTFNRGLIIHKLL-QVIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNL--LLSITRLLE 833
            +   G ++H+LL +        +  K  +           P +    L  +  I     
Sbjct: 561 SSSTVGSLLHELLKEAYEKNKSPNLLKERLIQLLETRENTTPKERLDTLVAIEKIQAFYR 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYK--TH---- 886
                   +    + + +      P + I+  GRID+I  +      + +YK  +     
Sbjct: 621 KE--QQRFNEKI-TILDLERSFEEPIEGIVFKGRIDRIDKTADNETILLDYKFKSDLKLD 677

Query: 887 ----HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
                      E    +   Q++IY   LK+    + +      + + ++    +  L  
Sbjct: 678 NMSKRKNLTPTEIAKESTDYQMAIYVYALKNLGYEEPIKAFFYDLKKGELVEEDELILQA 737

Query: 943 AFA 945
              
Sbjct: 738 KMD 740


>gi|149178400|ref|ZP_01856990.1| ATP-dependent deoxyribonuclease subunit B [Planctomyces maris DSM
            8797]
 gi|148842717|gb|EDL57090.1| ATP-dependent deoxyribonuclease subunit B [Planctomyces maris DSM
            8797]
          Length = 1125

 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 77/717 (10%), Positives = 172/717 (23%), Gaps = 177/717 (24%)

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A  I  ++             +  ++I ++ R    T     L     +   I    
Sbjct: 318  EVLAVEIKQLLLQG----------VPPEEISLVFRS---TLEYGDLIHETLSAAGIPYFL 364

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD-------------- 452
                  +    I+ +    +  L      S + +L S  F+    +              
Sbjct: 365  GQEQEFSRFPVIRAIFTFLQIELDNWSFDSLMSILDSNYFSPDWPEYKSGTAVRCLSRIL 424

Query: 453  ------------IFKICTQRHETETVYEYIQKFANCGISKFQ-----HVIKYI----HEL 491
                        +  +  +  +   +               +     H+ K +     +L
Sbjct: 425  RELKIDSGKTDILNALEKEYRKANELCTRYPDQPKRQAILLEMESAYHLAKRLSSETQKL 484

Query: 492  IHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFL---------------NF 535
                 F +  +    +       + +     G E +D  D+ +               + 
Sbjct: 485  RGKELFVTWIEILISLANEFGLPKAWSSEEPGTEALDQRDQLVWERFQKLLFHAVAEVDQ 544

Query: 536  TLRNEQNSYSSLQELISE---LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
              +  Q   + L  L      L+          +     V+++     + L  P + +  
Sbjct: 545  IEQFHQREAAPLDLLTFRSLLLDLLEQQTLALQTEETGRVQVLDASQLRNLSVPYLLVGG 604

Query: 593  TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                 F   H +          +        +                 + Q+E   L Y
Sbjct: 605  LSEASFPRSHREDCLYSEKDRGELNEYGLSLKRH--------------ANQQQEEMLLFY 650

Query: 653  VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
              MTR S +LI+   + +S  +      +   + D F       +     +       A 
Sbjct: 651  EVMTRFSKRLILSYPAISSTGQPLFASPYLTALMDLFEPGALSVRQVGELNPLPRREQAM 710

Query: 713  EWSTHH------------------------------------------PENTPLEREETI 730
                                                             +    E E  +
Sbjct: 711  SARDLRILAIDELKRDQPGLFLQILEEPGFQATARNILSAVEMAVARFEQEGFTEYEGIM 770

Query: 731  KQLMDEQKIPKKLFSPIKNDINEPY-----ILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
                  Q I ++     +    +              +  G    E          RG+ 
Sbjct: 771  VSAATRQAIHERFPQDYEFSTTQLELYLACPFQFFVQNVLGIEVPEPPELRTNFLQRGIH 830

Query: 786  IHKLL----QVIFTLPEHKRKNFITS----YCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
            +H +L    + + +  ++ +          +     K     + ++ L  +   +E  ++
Sbjct: 831  VHSILTRLYEQLGSEGDNTQLYEADQVEPLFLELLEKRVSDSDVESKLQQVLLSIEKQIL 890

Query: 838  TTA---MSCDSY------------------SEVSV---------------SGKINCPKKD 861
                   +  S                    EV                    +    ++
Sbjct: 891  KDWGGLFAEQSVTYGQLFEELWDTVPAIVGREVPFGKVPGEPDPSQRQYQHLTLGTGTRE 950

Query: 862  IIISGRIDQISIS---QQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
              + G+ID+I +     Q  F I +YKT   VP   E I      QL++Y    +  
Sbjct: 951  TRVRGQIDRIDVGTINGQKYFNIIDYKTGRSVPSSTE-IRTGKKLQLALYLIAARRL 1006


>gi|206580765|ref|YP_002237037.1| helicase, UvrD/REP family [Klebsiella pneumoniae 342]
 gi|206569823|gb|ACI11599.1| helicase, UvrD/REP family [Klebsiella pneumoniae 342]
          Length = 591

 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 18/173 (10%)

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             +  +   +   D    T  L++   +   +   +      +++DE QD + +  +++ 
Sbjct: 175 RRSLLQAGYMSAGDARAQTLRLIRDNVIGESLARALVARFQEVMVDEGQDCNPLDLQILT 234

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L           +    +  V D  Q+IY F    P+ +   K      A         
Sbjct: 235 WL----------RAHGVNVTFVCDPDQAIYEFRNGNPQGIQVFKDTYPIAAQK------- 277

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             L  +FRS+  I  +   +    +  + L E +           G  G   +
Sbjct: 278 -GLTGNFRSSPAICQLAATLRREGQIDRSLGESADVDYPVLLLTYGGRGPTAI 329


>gi|300856183|ref|YP_003781167.1| putative ATP-dependent DNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300436298|gb|ADK16065.1| predicted ATP-dependent DNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 623

 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 66/460 (14%), Positives = 137/460 (29%), Gaps = 101/460 (21%)

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            L F+ +      +++      +I+  +    +++ +DE QDT+ IQ+ ++++   +   
Sbjct: 194 CLTFQMISRLAEYMIRTN---KYIKNALRCTYSYVFLDEFQDTTEIQYCLVKTCFMN--- 247

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                 S   + AVGD KQ I  + GA                           L ++ R
Sbjct: 248 ------SNCNMTAVGDNKQRIMLWAGALKNIFNDFCSDFS---------AVEKLLLMNHR 292

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           S   ++ +           + L +D+   I                              
Sbjct: 293 SAPKLVQL------QKMMYESLRDDTKEIICSEKWNKNDG-------------------- 326

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
           +     + D   +       A+ +A +I     +  +            D  +L  K+K 
Sbjct: 327 EIYLYEFNDYHDE-------AKVVAMSIEKKYKSGFML----------NDTCILT-KQKP 368

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                 L   LK     + + ND   L      K ++ +   I   +   S+  ++    
Sbjct: 369 EKYTKDLIEELKKRGIRARIENDYQDLIKEPVTKLIINVLSLIFDNKRPDSWKYLVD--- 425

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
                   +     + + ++ Y+++ +  +      +   + +     I  F    D   
Sbjct: 426 --------YLSIAYKEQIDSDYDFLIEKESKLSHILKGYREDLSSCDDIKLFE---DVVN 474

Query: 506 LILG-------AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
            IL             Q          ++ L   L      E+   +  + L S      
Sbjct: 475 GILNFCDIGTLKSIYPQYMQEDCFKYTVEKLITLL--WNEYEEVGKNWSKTLESF----- 527

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                      + V IMT+H +KGLE   V+ +      F
Sbjct: 528 --------KGLHSVPIMTIHKSKGLEYDSVYFIGLEDSAF 559


>gi|227542073|ref|ZP_03972122.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182124|gb|EEI63096.1| RecB family exonuclease [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 280

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 70/224 (31%), Gaps = 39/224 (17%)

Query: 755 YILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR----- 801
             L+PS +    K  L                   +G ++H +L+ +  LP  +R     
Sbjct: 19  VALSPSRVSQYKKCPLSFRFGAIDKIPTETKDYQLKGTLVHAVLEHLMGLPPEERTYPTA 78

Query: 802 -----KNFITSYCTKNAKLWPAKEYKNLLLSITR--------LLENPMMTTAMSCDSYSE 848
                  +               E+K +   +          ++ENP            E
Sbjct: 79  VKLIVPTWEKMKAEDPGNAEVVPEHKEMDFFVQARGLIKGYFMMENPQGL----ETDRME 134

Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
             VS  +   + D+ + G ID++ ++   +  I +YKT               +AQ+  Y
Sbjct: 135 EFVSTTL---RDDVPLRGFIDRVDVNADGMVRIVDYKTGKKPSPRFADDA---MAQMKFY 188

Query: 908 EKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
             +    Y        L+Y++      +  +       E + ++
Sbjct: 189 ALVWWCLYGVIPAQLRLMYLAVGDDLTLSPD--EATLEEFAGEL 230


>gi|154502321|ref|ZP_02039381.1| hypothetical protein RUMGNA_00134 [Ruminococcus gnavus ATCC 29149]
 gi|153796946|gb|EDN79366.1| hypothetical protein RUMGNA_00134 [Ruminococcus gnavus ATCC 29149]
          Length = 1116

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/709 (9%), Positives = 191/709 (26%), Gaps = 88/709 (12%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLP--QESSASILARRIAYTISNMIGTDTIFSNGKKR 369
            ++           ++ +    D L      S  + A+  A  I  ++           +
Sbjct: 285 PELGFLESELFRYSRKQYPDETDHLSVYAAGSPDMEAKLTAQKIRRLVRE---------K 335

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
               +DI V+     D             +Y+I V  + +  +  +  ++ + ++   + 
Sbjct: 336 GYHYRDIAVIC---SDMGTYADHLERACTEYQIPVFMDYKKSILLNAFVEYVRSVLSMVE 392

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------RHETETVYEYIQKFANCGISKFQ- 482
                 S    L++    F+ D+I ++         R   +    + +K ++    +   
Sbjct: 393 QDFSYESVFRFLRTGFTEFTRDEIDRLENYVVAVGLRGYKKWQAVWARKTSSADEEELAV 452

Query: 483 ------HVIKYIHEL-----IHIAQFCSPHDFFTLILGAKKGRQQF-------------- 517
                   ++    L               +         + +Q+               
Sbjct: 453 LNGLRVRFVEMTQSLVFVLKQRKKTVRDICEAVYRFFVENQIQQKLKVMENCFAEKKELA 512

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMT 576
           +++   ++  ++ E  +       +   SL+E    L+      K        ++V I  
Sbjct: 513 LAKEYAQIYRIVLELFDKFAELLGDEGISLKEYCELLDAGLEEAKVGVIPPGMDQVVIGD 572

Query: 577 VHTAKGLE-SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ-SKSRNNIVSD 634
           V   +       +F V     +      +   +     +                  +  
Sbjct: 573 VQRTRLKSNLKALFFVGANDTLLPGNMGQGGLLTERDREWFQKEKQALSPGAKEKTYIQK 632

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQL---IICKHSNT--------------SNEKKSN 677
              ++  +  EE+  + Y  ++     L    +                      +++  
Sbjct: 633 FYLYMNLTKPEEFLHISYSKVSSDGKTLRPAYLVWDLKKLFPKLVVTEEEALLMTQRELT 692

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                + V     +                     +      +    +++       +  
Sbjct: 693 LGEGLEFVIRGVRDRYLGVDESWKELYTWYRQNEGQKVDRILDAGFFKKKPDALTGEEAA 752

Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
           ++  +        +        +   T G    +    + +  + G I H+ ++      
Sbjct: 753 ELYGEKKQFSVTRMERFSACAYAHFLTYGLHLSDRERYEFEAMDLGNIAHQSMERFARKA 812

Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSYSEV 849
           + KR  +      +   +      +++      +L +          +   +    ++  
Sbjct: 813 QEKRMPWPKLEEVQRDAMIEESVEESIKDYGNTVLYSTARNEYMIVRIKQLIRRSVWALT 872

Query: 850 SVSGKINCPKKDIIIS---GRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIA 902
               K +       ++   G+ID+I     +  ++  + +YKT      +I  + +    
Sbjct: 873 RQMEKGDFEPSGYEMNFGSGKIDRIDTCEDEDVVYVKVTDYKTG-MKSFDIVALYHGLQM 931

Query: 903 QLSIYEKIL----KDSYPNKSLV-CLLIYVSEPKVFIIPQNKLNKAFAE 946
           QL +Y        +   P K++    + Y        + + K + A  E
Sbjct: 932 QLPVYLNAALELEERRAPGKTVEPAGIFYYRIKDPI-VDREKDDHALEE 979


>gi|256371554|ref|YP_003109378.1| hypothetical protein Afer_0757 [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008138|gb|ACU53705.1| conserved hypothetical protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 259

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 65/225 (28%), Gaps = 30/225 (13%)

Query: 750 DINEPYILNPSTIDTKGKTNLESLLS--------DNQTFNRGLIIHKLLQVIFTLPEHKR 801
            +  P  L P+              S          +    G ++H  L+  +     +R
Sbjct: 2   PLAPPATLTPTKATAFSDCPFAFRRSVIDGVRTPPTRPLAVGTLVHAALEDFYRREPDRR 61

Query: 802 KNFI--------------TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
                                          +E   L  SIT L  +  +          
Sbjct: 62  SEAALNEAVDTAVRAAACDDELGAYVAELDDRERAALYRSITTL--SRTILDLEDPARVR 119

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            +    ++    + + + G ID++ +  +  + + +YKT    P   +      +     
Sbjct: 120 AIGTELRLEATIEGVHVRGVIDRLDLDDEGDLVVVDYKTGRTPPPSHQDARLGGVL---T 176

Query: 907 YEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           Y  ++   +     +  L+Y+ +  V    +    +    ++T++
Sbjct: 177 YALLVSVLFGRVPRLVRLVYLGDGSVIE--RAPSAQMLRGVATRL 219


>gi|163744556|ref|ZP_02151916.1| UvrD/REP helicase family protein [Oceanibulbus indolifex HEL-45]
 gi|161381374|gb|EDQ05783.1| UvrD/REP helicase family protein [Oceanibulbus indolifex HEL-45]
          Length = 634

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 71/465 (15%), Positives = 138/465 (29%), Gaps = 99/465 (21%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           K  VL F  +I    +LL +  V+   R  +    +H+ +DE QDT+ IQ++++R++   
Sbjct: 203 KRSVLSFP-MIGRLAELLLR--VNPMARDALRLTYSHLFMDEFQDTTQIQYDLLRTIF-- 257

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    +  T+ AVGD KQ I  +  A     +                     L  
Sbjct: 258 -------FGTETTITAVGDNKQQIMRWAMAMDDPFVAFDADF---------AGKRTPLYN 301

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS+ +++                       I+H  ++      V+   +         
Sbjct: 302 NYRSSPELVR----------------------IQHILAQAIDARAVEPISKTAVTIAGDS 339

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
                   + +D    E  A+ LA  +A  +                 +  +D ++LVR+
Sbjct: 340 -------CAIWDFSTPEVEAARLAAFVASEMK-------------THALGPRDFVMLVRQ 379

Query: 383 RKDTPLITFLTRFLKNDYKISVV---GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           +        +     N   I +    G    ++   L  +++  L   IL          
Sbjct: 380 K--AADYAAVLEPAFNAAGIPLRNEAGAVGAVVLQELLAEEVSELAVVILRLAMTKRAGR 437

Query: 440 MLKSP------LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
                      L   + DD        HE +     + K               I +++ 
Sbjct: 438 YWTECQEALATLHGITPDDEAAESRLAHELDAYTLKLCKAHPSPPKSKAAARIIIDDIMA 497

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                          G     ++                L+    +  +   S  +    
Sbjct: 498 FVGKDRLIA-VHPAYGQGGWLEKV---------------LDAAAVHLSSCSDSGGDWSMA 541

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           L+ Y            + + +MT+H +KGLE   V  V      +
Sbjct: 542 LDAY---------EGVHAIPLMTIHKSKGLEYHSVIFVGLDDGAW 577


>gi|296501839|ref|YP_003663539.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis BMB171]
 gi|296322891|gb|ADH05819.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis BMB171]
          Length = 1171

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 71/719 (9%), Positives = 199/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADE---------KYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  +++H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSNHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLIANIDHSRLSDVRATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKDSFITNDVNDLSRSEQISYVATPKVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|18309002|ref|NP_560936.1| ATP-dependent deoxyribonuclease chain B [Clostridium perfringens str.
            13]
 gi|81768349|sp|Q8XPE3|ADDB_CLOPE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|18143677|dbj|BAB79726.1| ATP-dependent deoxyribonuclease chain B [Clostridium perfringens str.
            13]
          Length = 1158

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 80/708 (11%), Positives = 193/708 (27%), Gaps = 152/708 (21%)

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A  I  ++           +  + KDI V+ R   D      +   + ++Y+I    
Sbjct: 319  EFVAKDILRLVRE---------KQYRFKDISVICR---DVDNYEKVVSAIFSEYEIPYYI 366

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL----FNFSEDDIFK-----IC 457
            + +  +  +  I  + +    I       S    LK+ L          ++       + 
Sbjct: 367  DKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGIEGAELIDELENYVL 426

Query: 458  TQRHETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIA---------------- 495
                + +   E    +            + +  ++ ++++                    
Sbjct: 427  AYGIKGKKWMEEWVNYSSSILKEEEISEENKQRLERLNDIRETIVTPLDEFNKQCKGKKT 486

Query: 496  ---QFCSPHDFFTLILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQ 541
                    ++F    L       +++  F             EV D+  + L   +    
Sbjct: 487  LKEFATILYEFLDSKLDIMDTLDKYVDYFKENDMAIEAKEYSEVRDIFIDVLEQAVDVLG 546

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            N    L E +  L       +        ++V I  +   K   +  ++++     V   
Sbjct: 547  NEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVNDGVLPS 606

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               ++  +  +  +          S +R  I              E   L+Y   T A +
Sbjct: 607  ASKEEGILSDNDREILLEKGISLASDTRTKIF-------------EEQFLVYTAFTIAEE 653

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L++         K          +     N +   +         ++  A   + +   
Sbjct: 654  YLVVTYPLADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVDDKYEKISAKIPTLNELM 713

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------------------ 756
                +  +  +     + +        K      Y+                        
Sbjct: 714  IAIRKNYDGAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYED 773

Query: 757  ------LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ-------- 791
                  L+ S ++   +              +  + +    + G  +H++L         
Sbjct: 774  NKNKISLSVSRLERYAQCPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFTNEIKE 833

Query: 792  ---VIFTLPEHKRKNFITSYCTKNAK------LWPAKEYKNLLLSITRLLE------NPM 836
                   L +   +N I S      K      L  +K Y        R+L       +  
Sbjct: 834  KDLKWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQ 893

Query: 837  MTTAMSCDSYSEVSV-------SGKINCP-KKDIIISGRIDQIS---ISQQNIF-IFEYK 884
            M  +      +E++        S K++ P  +   ++GRID++    +  +    I +YK
Sbjct: 894  MKRSDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYK 953

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
            T      ++         QL +Y   L    ++   N+++   ++Y  
Sbjct: 954  TGSKKF-DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFR 1000


>gi|326440246|ref|ZP_08214980.1| RecB family exonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 264

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 56/195 (28%), Gaps = 21/195 (10%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
               +    RG ++H +L+ +F  P  +R                  +   L        
Sbjct: 16  PERPSAAATRGTLVHAVLERLFDAPAAERTAGRARSLVPGQWDRLLADRPELGGLFEGDT 75

Query: 833 ENPMMT-TAMSCDSYSEVSVSGKINCPKK--------------DIIISGRIDQISISQ-Q 876
               +       ++  E   S +     +               + + G ID++ ++   
Sbjct: 76  GGERLAGWLAEAEALVERWFSLEDPTRLEPAEREMFVEVGLDSGLRLRGVIDRVDVAPTG 135

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            + I +YKT      E        + Q+  Y  ++            L+Y+    V  + 
Sbjct: 136 EVRIVDYKTGKAPRPEYSEGA---LFQMHFYALVIWRLKKVVPRRLQLVYLGSGDV--LT 190

Query: 937 QNKLNKAFAEISTKI 951
            + +      +  K+
Sbjct: 191 YDPVPADLERVERKL 205


>gi|182439644|ref|YP_001827363.1| hypothetical protein SGR_5851 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178468160|dbj|BAG22680.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 303

 Score = 84.2 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 27/198 (13%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
               ++   RG ++H +L+ +F  P   R                 +    L        
Sbjct: 38  PEKPSEAATRGTLVHAVLERLFDAPAADRTAPRARALIPGQWDRLLESKPELSDLFAGDT 97

Query: 833 ENPMMTTAMSCDSY------------------SEVSVSGKINCPKKDIIISGRIDQISIS 874
           E   +T  +                        E+ V  ++      + + G ID++ ++
Sbjct: 98  EGERLTRWLGEAERLVDRWFSLEDPTRLEPAERELFVETELES---GLRLRGVIDRVDVA 154

Query: 875 Q-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
               + I +YKT      E    P   + Q++ Y  ++            L+Y+    V 
Sbjct: 155 PSGEVRIVDYKTGKAPRPEYSDGP---LFQMTFYALVIWRLKGVVPRRLQLVYLGSGDV- 210

Query: 934 IIPQNKLNKAFAEISTKI 951
            +  + +      +  K+
Sbjct: 211 -LTYDPVVADLERVERKL 227


>gi|297195363|ref|ZP_06912761.1| RecB family exonuclease [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719267|gb|EDY63175.1| RecB family exonuclease [Streptomyces pristinaespiralis ATCC 25486]
          Length = 277

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 66/224 (29%), Gaps = 39/224 (17%)

Query: 757 LNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHK-------- 800
           ++PS      +  L              ++   RG ++H +L+ +F  P  +        
Sbjct: 1   MSPSRASDFMQCPLLYRFRVIDKLPEKPSEAATRGTLVHAVLERLFDDPAAERTAPRAKA 60

Query: 801 ------------RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
                       R      +         ++        + R       T     +   E
Sbjct: 61  MVPGQWSRLLQTRPELGELFAEDPGGERLSRWLGEAEQLVERWFTLEDPTRLEPRE--RE 118

Query: 849 VSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           + V  ++      + + G ID++ I+    + I +YKT      E        + Q+  Y
Sbjct: 119 MFVETELES---GLRLRGVIDRVDIAPTGEVRIVDYKTGKAPRPEYSEGA---LFQMKFY 172

Query: 908 EKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
             ++            L+Y+    V  +  + +      +  K+
Sbjct: 173 ALVIWRLKQVVPRRLQLVYLGSGDV--LTYDPVTADLERMERKL 214


>gi|229143846|ref|ZP_04272265.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST24]
 gi|228639607|gb|EEK96018.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST24]
          Length = 1171

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 199/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADE---------KYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  +++H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSNHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLIANIDHSRLSDVRATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|317470348|ref|ZP_07929739.1| ATP-dependent nuclease subunit B protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316902152|gb|EFV24075.1| ATP-dependent nuclease subunit B protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 1117

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 72/682 (10%), Positives = 178/682 (26%), Gaps = 123/682 (18%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              +R I   I +++  +           + KD++VL     D             D  I
Sbjct: 314 KEESRYILGCIEHLVRKE---------GYRYKDLVVLT---GDMETYQPELEKCFEDSGI 361

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC----- 457
               +    L ++  ++ +++  + I            LKS       ++   +      
Sbjct: 362 PCFIDGNRALRNNPCVETILSALKMIQMDFSYEMVFRYLKSGFSALEPEETDLLENFVIA 421

Query: 458 -----TQRHETETVYEYIQKFANCGISKFQH-------------------VIKYIHELIH 493
                  R           K     I++ +                    V++ +  L  
Sbjct: 422 SGIRGYARWNRPFKSRAFTKEEMKQINQSRETFMKETGPFKEGIRKRGITVLERLTHLHG 481

Query: 494 IAQFCSPHDFFTLILGAKK--GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                             +  G       +     +VL+  ++           S  E  
Sbjct: 482 FFLTLDIQGQMERKKEEFEAAGDLAMAKTYDQIYGEVLN-IMDQMAEILGEEELSFDEFC 540

Query: 552 SELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + LE     +         ++V +  +   +     V+F       V          +  
Sbjct: 541 AVLETGLSEMTVGVIPPGLDQVIVGDIERTRVEGVKVLFFAGINEGVVPKPSKGGGLVTD 600

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           S  ++           + N    +                LY+ M++  ++L +   S  
Sbjct: 601 SQREELLKAGISLAPGAANQAYMEQYY-------------LYLAMSKPDEKLYLTYASMD 647

Query: 671 SNEKKSNQRTWYDMVYDSFHND--ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
           S+ +          +   F     +   +     S+++      E      E  P +   
Sbjct: 648 SSGESKAPSYLIGRIEKLFPGLKKDLDLQETPVYSVSEARERFVEKLQEFGEEKPDQEMA 707

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINE--------------PYILNPSTIDTKGKTNL---- 770
            + ++++E+K+             E                  + + ++           
Sbjct: 708 ALYEVLNERKLVSPYLDAYFYSNEEKNLDRHLTTLLYGKELENSVTRVEKFSGCAFAHFL 767

Query: 771 -------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS--YCT---KNAKLWPA 818
                  E L+ +    + G + H+ LQ +        ++      +     + A     
Sbjct: 768 QYGLRLRERLVHEILPMDMGQVFHRTLQFVGQEGSWDWEDDRERDRFVDSMVERALDEDP 827

Query: 819 KEYKNLLLSITRLLENPMMTTAMSCDSYS-EV--------SVSGKINCPKKDII------ 863
            + +    S         +        ++ E             ++     D +      
Sbjct: 828 DKKEIFESSSRNQYTKERIRRMAKRAVWAVEQQIKRGEFTPYEYELGFSADDGLSCANLS 887

Query: 864 --------ISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
                    +G ID++     ++N++  I +YK+  ++  +   I      QL +Y   +
Sbjct: 888 LKDGTKMKFTGVIDRVDCYEDEENLYLKIIDYKSG-NMQFDFTKILNGLQVQLVVYMNAI 946

Query: 912 KDS----YPNKS-LVCLLIYVS 928
            +     YP K  +   + Y  
Sbjct: 947 LELEGKKYPEKRMVPAGMFYFH 968


>gi|229016489|ref|ZP_04173430.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1273]
 gi|228744756|gb|EEL94817.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1273]
          Length = 1171

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 71/719 (9%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFHGEASVTISTAANLRAEVEGVAREIRRLVADE---------DYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDASEMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRVRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKMSLSMFTEVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V +  +  ++  +    F++     V              L+D+    +     +   
Sbjct: 587 DQVLVANIDHSRLSDIKATFIIGVNEGVIPA----APMDEGMLSDEERNVLTAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDTIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|229022698|ref|ZP_04179222.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1272]
 gi|228738510|gb|EEL88982.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1272]
          Length = 1166

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 71/719 (9%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFHGEASVTISTAANLRAEVEGVAREIRRLVADE---------DYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDASEMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRVRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKMSLSMFTEVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V +  +  ++  +    F++     V              L+D+    +     +   
Sbjct: 582 DQVLVANIDHSRLSDIKATFIIGVNEGVIPA----APMDEGMLSDEERNVLTAAGIELAP 637

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 638 TT---------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDTIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|258612263|ref|ZP_05711815.1| DNA helicase [Listeria monocytogenes F6900]
 gi|258610289|gb|EEW22897.1| DNA helicase [Listeria monocytogenes F6900]
          Length = 474

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 96/259 (37%), Gaps = 33/259 (12%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE---INKKSPDLKEKLKKSQDEFIK 109
           + + +  +     +  L  +     F   K+  T++    N+++  L+  L   +    +
Sbjct: 114 ISELNGHEDPFISYKHLKEWLADDSFDKLKHPSTKKQLLYNEQNYALRNWLLSMKCTLTE 173

Query: 110 IRDRFNTYKM-------FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
              +F               + A+L +      +Y++    +   D ED++  ++ L++ 
Sbjct: 174 SSAQFQCENSKAFYEGKRLISNANLNILNAELINYKKLYWASGYFDHEDILFFSHILIEH 233

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                +I   +  +  ++ IDE QDT+ IQ   +               S   +  +GD+
Sbjct: 234 NP---FILKVLCAKFPYLFIDEFQDTNPIQSFFVTKF----------RESGGIVGVIGDK 280

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q+IY F G++  +                ++    ++  + RS+ DI+  +  + +  E
Sbjct: 281 AQAIYGFQGSDSSQFENFPI----------KEHCSYKILDNHRSSTDIVNFLKVIRTDLE 330

Query: 283 NAQGLSEDSTTTIRHRSSR 301
               +   S   I H  SR
Sbjct: 331 QINCVKTQSDKVIIHVGSR 349


>gi|254900454|ref|ZP_05260378.1| DNA helicase [Listeria monocytogenes J0161]
          Length = 577

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 96/259 (37%), Gaps = 33/259 (12%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE---INKKSPDLKEKLKKSQDEFIK 109
           + + +  +     +  L  +     F   K+  T++    N+++  L+  L   +    +
Sbjct: 103 ISELNGHEDPFISYKHLKEWLADDSFDKLKHPSTKKQLLYNEQNYALRNWLLSMKCTLTE 162

Query: 110 IRDRFNTYKM-------FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
              +F               + A+L +      +Y++    +   D ED++  ++ L++ 
Sbjct: 163 SSAQFQCENSKAFYEGKRLISNANLNILNAELINYKKLYWASGYFDHEDILFFSHILIEH 222

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                +I   +  +  ++ IDE QDT+ IQ   +               S   +  +GD+
Sbjct: 223 NP---FILKVLCAKFPYLFIDEFQDTNPIQSFFVTKF----------RESGGIVGVIGDK 269

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q+IY F G++  +                ++    ++  + RS+ DI+  +  + +  E
Sbjct: 270 AQAIYGFQGSDSSQFENFPI----------KEHCSYKILDNHRSSTDIVNFLKVIRTDLE 319

Query: 283 NAQGLSEDSTTTIRHRSSR 301
               +   S   I H  SR
Sbjct: 320 QINCVKTQSDKVIIHVGSR 338


>gi|47095888|ref|ZP_00233492.1| DNA helicase II, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|293596662|ref|ZP_05263320.2| DNA helicase [Listeria monocytogenes J2818]
 gi|47015765|gb|EAL06694.1| DNA helicase II, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|293591309|gb|EFF99643.1| DNA helicase [Listeria monocytogenes J2818]
          Length = 588

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 96/259 (37%), Gaps = 33/259 (12%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE---INKKSPDLKEKLKKSQDEFIK 109
           + + +  +     +  L  +     F   K+  T++    N+++  L+  L   +    +
Sbjct: 114 ISELNGHEDPFISYKHLKEWLADDSFDKLKHPSTKKQLLYNEQNYALRNWLLSMKCTLTE 173

Query: 110 IRDRFNTYKM-------FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
              +F               + A+L +      +Y++    +   D ED++  ++ L++ 
Sbjct: 174 SSAQFQCENSKAFYEGKRLISNANLNILNAELINYKKLYWASGYFDHEDILFFSHILIEH 233

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                +I   +  +  ++ IDE QDT+ IQ   +               S   +  +GD+
Sbjct: 234 NP---FILKVLCAKFPYLFIDEFQDTNPIQSFFVTKF----------RESGGIVGVIGDK 280

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q+IY F G++  +                ++    ++  + RS+ DI+  +  + +  E
Sbjct: 281 AQAIYGFQGSDSSQFENFPI----------KEHCSYKILDNHRSSTDIVNFLKVIRTDLE 330

Query: 283 NAQGLSEDSTTTIRHRSSR 301
               +   S   I H  SR
Sbjct: 331 QINCVKTQSDKVIIHVGSR 349


>gi|326334226|ref|ZP_08200449.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1]
 gi|325948017|gb|EGD40134.1| helicase, UvrD/Rep family [Nocardioidaceae bacterium Broad-1]
          Length = 293

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/206 (9%), Positives = 59/206 (28%), Gaps = 30/206 (14%)

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN------- 781
                           S      + P  L+ S ++       +  L+             
Sbjct: 9   AADPSTWWGLRAPTYASAAVRPEDRPITLSASALEAILTCPAQWFLAREAGGAVTDSSSQ 68

Query: 782 -RGLIIHKLLQVIFTLPEHKR--------KNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
             G ++H + + +                 + +            A+E + +   + R L
Sbjct: 69  GFGKVVHAIAEQLARGDLDAATVEDLMPFVDEVWGRLEFRTPWSAAREREAVREVLARFL 128

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCP-----KKDIIISGRIDQISISQ-QNIFIFEYKTH 886
                       + + +    ++         + + ++G  D++ + +   I + + KT 
Sbjct: 129 TWHR-----RPGARTVIGFEEQLTAKVSLPSGETVRLNGYADRLELDESGRIVVVDLKTG 183

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILK 912
            + P   + +      QL +Y+  ++
Sbjct: 184 KYPP-TAQEVKEH--GQLGLYQLAVE 206


>gi|302527193|ref|ZP_07279535.1| RecB family exonuclease [Streptomyces sp. AA4]
 gi|302436088|gb|EFL07904.1| RecB family exonuclease [Streptomyces sp. AA4]
          Length = 296

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 67/231 (29%), Gaps = 35/231 (15%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
                     L+PS      +  L               +   RG ++H +L+ +F LP 
Sbjct: 13  ADAPARRRPALSPSRASDFKQCPLLYRFRAVDRLPEVPTRAQLRGTLVHAVLERLFALPA 72

Query: 799 HKRKNFITSYCT---------------KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
            +R                        +        E    L S  +LL++         
Sbjct: 73  AERVAPRAKELLAPTWTELSAESPEWTELFADGEPGETDKWLASAEKLLDS--YFELEDP 130

Query: 844 DSYSEVSVSGKINCPKK-DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI 901
                 +    +       +++ G ID++ ++    I + +YKT     +  E      +
Sbjct: 131 RRLEPEACELHVEIELGSGVLLRGYIDRVDVAPTGEIRVVDYKTGAAPREIGEAKA---L 187

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK-----LNKAFAEI 947
            Q+  Y  +L            L+Y+++ +      ++       +    I
Sbjct: 188 FQMKFYALVLWRLRGVVPRQLKLMYLTDGQSLAYTPDEAELVRFERTLEAI 238


>gi|302879643|ref|YP_003848207.1| hypothetical protein Galf_2444 [Gallionella capsiferriformans ES-2]
 gi|302582432|gb|ADL56443.1| hypothetical protein Galf_2444 [Gallionella capsiferriformans ES-2]
          Length = 902

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/610 (10%), Positives = 167/610 (27%), Gaps = 79/610 (12%)

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
              ++    R L    ++ V     +          LM     +         + +LKSP
Sbjct: 265 QDRMVARRLRALLERARVMVQDETGWTFATLSVSTVLMRWLEAVQGDFYYQDVLDLLKSP 324

Query: 445 LFNFSEDDI--------FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-A 495
                   +         ++  +      + E+I             +++       + A
Sbjct: 325 FLFAENQVLRKQAAYQFEQLVRRHGVVLHLNEHIAAAEREAPELVPALVRLRQAARLLTA 384

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS--LQELISE 553
           +  S   + + +  +            +     L + L       Q   +S    E    
Sbjct: 385 RHASLSGWLSALHQSLDLLGVIHGWRQDAAGQQLMQLLALWQEELQADTTSCSFSEWRRW 444

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           L Q          +  + V    +   +      V L+   +          +    ++ 
Sbjct: 445 LSQQLDLNTYRDLSVDSPVLFTHLAATRWRCFDAVLLLGCDAGHLPAPVNAGLWFNDAVR 504

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              G+P+                   +   +++   LL +  T      ++       N 
Sbjct: 505 TTLGLPLSCV---------------QQDQVRDDLLSLLAMNGT------VLATWQANCNG 543

Query: 674 KKSNQRTWYDMVYDSF--HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
           + +    +++M+           +  ++L   +   +    +        T         
Sbjct: 544 EPNLLSPYFEMLRAMHLLAFGHDLMNVELGGLLPLAQVRIQDSDRKGLPRTTKVLHTKFL 603

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-------------LESLLSDNQ 778
           +     + P K+  P+      P  ++PS  ++                  L+ +  D  
Sbjct: 604 REGCRIQDPAKMPRPVVPPELIPQKISPSGYNSLVACPYQYFARHVLHLNELDDVREDLD 663

Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
             + G  +H++LQ  F     +  +       +  +    + + N L      L    + 
Sbjct: 664 KRDYGTWVHEVLQR-FHAEIPQLGSRDKGEAERVLRRISDEVFANAL--AHDYLAQAWLL 720

Query: 839 TA-------------MSCDSYS----EVSVSGKINCPKKDIIISGRIDQI---SISQQNI 878
                          +  D +     EV     ++    ++++ GR+D++     +    
Sbjct: 721 RWQGLIPAYLHWQLEIEADGWRYHAAEVPFEVAVS---GNLLLRGRLDRVDVSVENADAF 777

Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
            + +YKT      + +        QL+ Y  +        +     + + +  V  +  +
Sbjct: 778 AVIDYKTQSIQGLKNKLKSPGEDVQLACYAHV------QAAKTAAFVSLDDDTVQAVSPD 831

Query: 939 KLNKAFAEIS 948
           +     A+++
Sbjct: 832 EEIDELAQLT 841


>gi|317506021|ref|ZP_07963851.1| hypothetical protein HMPREF9336_00220 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316255679|gb|EFV14919.1| hypothetical protein HMPREF9336_00220 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 288

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 64/221 (28%), Gaps = 30/221 (13%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPE 798
           +++  +    L+PS      +  L                   RG ++H  L+ +  LP 
Sbjct: 6   VESSPSRRLALSPSRASDFRQCPLLYRLRAIDRIPQPPTLAMVRGTLVHAALEDLLALPA 65

Query: 799 HKR-KNFITSYC------------TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
             R  +                    N      +  + L      LL            S
Sbjct: 66  ESRTLDAAHGLVAPSWERVSGEMAEDNRLDLDEQGLEQLFEQSKTLL--AGYFALEDPAS 123

Query: 846 YSEVSVSGKINCPKK-DIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            +  +   ++    + D+ + G +D++   +   + + +YKT        E      + Q
Sbjct: 124 VTPHACELRVEVELEPDVPLRGFVDRVDELAGGELRVVDYKTGRAPGGLYEAKA---LFQ 180

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVF--IIPQNKLNK 942
           +  Y   L            L+Y+            ++L++
Sbjct: 181 MKFYALALWKLRGVVPNELRLMYLGSGDTLTYEPEPDELDR 221


>gi|215410174|ref|ZP_03418982.1| exonuclease V beta subunit recB [Mycobacterium tuberculosis
           94_M4241A]
 gi|298524119|ref|ZP_07011528.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298493913|gb|EFI29207.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 499

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/442 (11%), Positives = 110/442 (24%), Gaps = 101/442 (22%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             ++   V+IMTV  AKGL+ P+V+L    ++      I        L  D G       
Sbjct: 1   MDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDIL-------LYHDDGTRCLYIG 53

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS----------NEK 674
            K        +    +     +  RL YV +TRA  Q++                    +
Sbjct: 54  GKDGGAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGR 113

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           +  Q    D       +++         +                   P+       +  
Sbjct: 114 RPGQSQVPDRCTPRVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHF 173

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE-----------------SLLSDN 777
             +       +   + +     +  ++    G    E                  L +  
Sbjct: 174 HRRIDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEVEIAVVAAPGSGADLTSPLAALP 233

Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP-----AKEYKNLLLSITRLL 832
              + G ++H +L+             + +   ++A  W      A+    L  ++  + 
Sbjct: 234 SGASFGSLVHAVLETADPAAPDLAAE-LEAQVRRHAPWWTVDVDHAQLAPELARALLPMH 292

Query: 833 ENPM--------MTTAMSCDSYSEVSVSGKINCPKKDII--------------------- 863
           + P+        +      D   E+     +                             
Sbjct: 293 DTPLGPAAAALTLRQIGVRDRLRELDFEMPLAGGDLRGRSPDVSLADVGELLASHLPGDD 352

Query: 864 ----------------------ISGRIDQISISQQ-NIFIFEYKTHHHVPQEIEHIPYT- 899
                                 ++G ID +         + +YKT+H      ++     
Sbjct: 353 PLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRLPGQRYLVVDYKTNHLGDTAADYGFERL 412

Query: 900 --------HIAQLSIYEKILKD 913
                   +  Q  +Y  +L  
Sbjct: 413 TEAMLHSDYPLQALLYVVVLHR 434


>gi|256788739|ref|ZP_05527170.1| hypothetical protein SlivT_29982 [Streptomyces lividans TK24]
 gi|289772633|ref|ZP_06532011.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289702832|gb|EFD70261.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 268

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 60/198 (30%), Gaps = 27/198 (13%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
               ++   RG ++H +L+ +F  P  +R                 +    +        
Sbjct: 16  PEKPSEAATRGTLVHAVLERLFDAPAAERTAPTARALVPGQWDRLRESRPEVGELFADDP 75

Query: 833 ENPMMTTAMSCDSY------------------SEVSVSGKINCPKKDIIISGRIDQISIS 874
           E   +   ++                       E+ V  +++     + + G ID++ ++
Sbjct: 76  EGERLAQWLAEAERLVERWFSLEDPSRLEPAERELFVEAELDS---GLRLRGIIDRVDVA 132

Query: 875 Q-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
               + I +YKT      +        + Q+  Y  ++            L+Y+    V 
Sbjct: 133 PTGEVRIVDYKTGKAPRPQYAEGA---LFQMKFYALVVWRLKKVVPRRLQLVYLGSGDV- 188

Query: 934 IIPQNKLNKAFAEISTKI 951
            +  + +      +  K+
Sbjct: 189 -LTYDPVLADLERVERKL 205


>gi|152974672|ref|YP_001374189.1| ATP-dependent nuclease subunit AddB [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|251764583|sp|A7GM36|ADDB_BACCN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|152023424|gb|ABS21194.1| ATP-dependent nuclease subunit AddB [Bacillus cytotoxicus NVH
           391-98]
          Length = 1170

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/719 (10%), Positives = 200/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++ +     ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 ESRPNEKFYGETSIAIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVLRTLFADYDIPHFIDEKRSMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +   + +                 
Sbjct: 407 VKTELLYPLDVKKEVMREEMDEFENYCLAYGVQGKKWTADEPWTYRRYRSLDEGNEVITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + ++ L                     +    + + F   +     L   + R 
Sbjct: 467 RERQMEEKMNRLREIVRTPIIRLQKRLKRASTVMQMCEAVYLFLEELDVPKKLEQLRVRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +   ++V + +   L+  +        SL   I  +      ++ A+     
Sbjct: 527 EESGDFLFATDHDQVWEEVMNLLDTFVEMLGEESMSLSVFIDVMTTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V       +  +     D               
Sbjct: 587 DQVLIANIDRSRLSNIRATFVIGANEGVMPATPTDEGMLSDEERDVL------------- 633

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                 +    + T  E   +LY  +TRAS++L I         K     ++   +   F
Sbjct: 634 AAAGVELAPTTRQTLLEEQFVLYQMVTRASEKLYISCPLADEEGKTLLASSFMKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++   I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKETFVTNDVNDLSRAAQISYVTTPEVTLSYVMQQLQTWKRYGFEGDLDFWWDVYNFY 753

Query: 744 -------------------FSPIKNDINEPYIL--------NPSTIDTKGKTN------- 769
                               +  K        +        + S ++   +         
Sbjct: 754 VTSDEWKQKSNRVLSSLFYRNRAKKLSTAVSRILYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      +++ +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLREKRTWADLSIKECEHLSILVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +        KD +   
Sbjct: 874 LLQRQILLSSNRHAYLKQKLQQIIFRTSLVLREHAKASGFVPVDLEVPFGMGGKDSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFTLSNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|326202080|ref|ZP_08191950.1| ATP-dependent nuclease subunit B [Clostridium papyrosolvens DSM
           2782]
 gi|325987875|gb|EGD48701.1| ATP-dependent nuclease subunit B [Clostridium papyrosolvens DSM
           2782]
          Length = 1148

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 80/762 (10%), Positives = 190/762 (24%), Gaps = 155/762 (20%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            VF+  + +             +      + +  L     S+          ++      
Sbjct: 244 DVFAAVKKSCKKFVSIAEASDVKILPPVGLNSANLPRFKESRELQSQEANYFAYPYRVYQ 303

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
            P        +  I   I        I    +   +Q KDI V  R          L   
Sbjct: 304 QPTTDIELFESVNIYAEIEECARD--IIRQCRDNDMQFKDITVATRNLTG---YENLIEV 358

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
           +   Y I    + +  +T+H  ++ ++++           +    LKS L    +  I  
Sbjct: 359 IFEQYNIPCFIDSKTEITNHPLVRMVLSMLEIFTENWSYEAVFRYLKSGLTGIEDTRIDL 418

Query: 456 ICTQ-RHETETVYEYIQKFANCGISKFQ---------------------HVIKYIHELIH 493
           +             + Q+       +F+                      V + +    +
Sbjct: 419 LENYVLACGIRGSRWTQEAEWNTSIEFRPDDKQSPENDEMLLQVNVTRNEVREPLLRFRN 478

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEF-----LNFTLRNEQNSYSSL 547
             +     + F          +  +     E   D +D F     L      +Q     +
Sbjct: 479 RTKGRRTAEDFC-----TGIYEYLVEIGVEERIRDYIDSFTQNGQLRLAGEYQQVWNILM 533

Query: 548 QELISELEQYPPTIK------------------RAHSANHNEVRIMTVHTAKGLESPVVF 589
                 +E                          +  A+ ++V I ++   +  E   ++
Sbjct: 534 DVFDQVVEVMGDETFGIEKFANVFKIGLAEYKISSIPASLDQVLIGSIEHLRSHEIKALY 593

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           ++ T   VF    I +  +     D          S +++                +   
Sbjct: 594 ILGTNDGVFPSAGISEGVLSDKDRDVLNKKGIELASDTKSKAF-------------DELY 640

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK--D 707
           L+Y  +T   + L I         +     T    +   F N      I     +N   D
Sbjct: 641 LIYRTLTMPKNFLRISWPIADHEGRTMRPSTIISRMRKIFPNITEKNNILKPAGVNNNID 700

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--------------------PI 747
              +   S +   +   ++ E I+     +++     +                     +
Sbjct: 701 LIASPVPSFNQLVSILRQKNEGIEPGHMWKELFAWFSAQEEWKQKCDAMINALKYRNIAV 760

Query: 748 KNDINEPYILN-------PSTIDTKGKTNLESLLSDNQTFN-----------RGLIIHKL 789
             D  +   L         S ++          +                   G  +H +
Sbjct: 761 PVDKAKIRELYGKNPYFTVSRLEKYTSCPFAFYVQYGLGARERKIYRLSPPDVGTFMHAV 820

Query: 790 LQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT-------- 838
           ++    + +      +     +C+        +   ++  +I     +            
Sbjct: 821 IERFSKMVDENNYSWREIDRQWCSDEVSKIVDELLASMKNTILG--GSKRFKALAVRLKR 878

Query: 839 ------TAMSCDSYS--------EV---------SVSGKINCPKKDIIISGRIDQIS--- 872
                   ++             EV          +  +++   + I + GRID+I    
Sbjct: 879 VVTRAVWLIAEHIRRSSFEPVGYEVEFGEGGAYPPIVIELD-SGEKIKLVGRIDRIDTLS 937

Query: 873 ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL 911
                   I +YK+     ++ +     +  Q+ +  Y   L
Sbjct: 938 TDNGKYLRIVDYKSG---DKDFKLSDVYYGLQMQLITYLDAL 976


>gi|212640055|ref|YP_002316575.1| ATP-dependent nuclease, subunit B [Anoxybacillus flavithermus WK1]
 gi|212561535|gb|ACJ34590.1| ATP-dependent nuclease, subunit B [Anoxybacillus flavithermus WK1]
          Length = 1167

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 76/761 (9%), Positives = 216/761 (28%), Gaps = 157/761 (20%)

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +   +  +      ++     +    R       +    + + +D +   + E  T    
Sbjct: 265 NTWRTYAQLRDIALQNGVPIEKVEQLRHNVRHKHEELRHLEAHYDDRPVCKWEKQTEAI- 323

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            + + ++       IA  I  ++  +           + +DI +L+R   D   +    +
Sbjct: 324 IIGEATTRRAEIEGIAREIIRLVRDE---------GYRYRDIALLIRNVGDYRNV---LK 371

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            +  DY+I    +++  + DH  I+ L A    + +     +    +K+  F   +  + 
Sbjct: 372 TVFADYRIPYFIDEKEPMLDHPFIEWLRASMEAVRTNFRYEAVFRAVKTDFFFHLDQPVH 431

Query: 455 KICTQRHETETVYEYIQKFANCGISKF-------------------QHVIKYIHELIHI- 494
            +     + E          +     +                   +   + ++E   + 
Sbjct: 432 DMRMAMDQLENYVLAFGIQGDKWTEHWTYRKYKGLEGVHAPQTDEEKRYEQQLNEWRKLV 491

Query: 495 ---------------------------AQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVI 526
                                      A+          +    + R    ++R   +V 
Sbjct: 492 ISPLLVLQKRLKQAKTGREQCEALYAYAEHLQIPQKLERLRDEAEERGDLSVARHHEQVW 551

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLES 585
               + L+  +    +   SL+  ++ +E    +++ +      ++V I     ++    
Sbjct: 552 QAFIDLLDQYVEILGDETLSLETFLTIIETGFESLQFSLVPPATDQVLIAHFDRSRLSNI 611

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
              FLV     V   +                  +     +   +    +    ++   +
Sbjct: 612 RCTFLVGVNEGVIPMRKN------------DDGMLSETDRELLYHYSLHVAPASRERMLD 659

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E   LLY+ +  +S++L +    +   EK      +   + D F N  +++       + 
Sbjct: 660 EPF-LLYLALVSSSERLYVTYALSNEQEKTLLPSMFIKRLTDMFPNVTKMQWGTDPFLLP 718

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-------- 757
             + +AY  +        +++ E  K+    + +   +++           +        
Sbjct: 719 LQQQLAYVTNDVATLGPLVQQLEAWKRQYAIEPMWWDVYNAYVQHEQWKERIAVVVRALF 778

Query: 758 -----------------------NPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
                                  + S ++T  +              E  +   +  + G
Sbjct: 779 YENRAKRLNKQLAKELYGKKVKASISRMETFNRCPFAHFAAHGLKLKERTVFQLKAPDMG 838

Query: 784 LIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT- 839
            + H+ L+VI      +           C + +     +    +   +   L        
Sbjct: 839 QLFHQALKVIADRLRQEQLPWSQLSKQQCEQLSYEAVEQIAPYIQQEVL--LSTHRYRYM 896

Query: 840 -------------AMSCDSYSE--VSVSGKINCPKK------------DIIIS--GRIDQ 870
                         +S  +     V +  ++                   ++   GRID+
Sbjct: 897 KKKLQTIMTKATTVLSEHAKRSGFVPIGVELGFGDGEPLPPLTFTLSDGTVLQFVGRIDR 956

Query: 871 I--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           +  ++S+Q +   + +YK+      ++  + Y    Q+  Y
Sbjct: 957 VDQAMSEQGVLLRVIDYKS-KQKTLDLTEVYYGLALQMLAY 996


>gi|134093953|ref|YP_001099028.1| hypothetical protein HEAR0707 [Herminiimonas arsenicoxydans]
 gi|133737856|emb|CAL60901.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 854

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 70/618 (11%), Positives = 166/618 (26%), Gaps = 83/618 (13%)

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
           D   +      T     L    +    AR  A T+ + +                  I +
Sbjct: 219 DEMDSAALSLATPPGLKLHAAQNMEAEARAGAQTVIDWLQQGKTN------------IAI 266

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           +        ++    R L    +I V     + L+   A   + A    + ++ + +  +
Sbjct: 267 V----AQDRVVARRIRALLERAQIVVADETGWKLSTTRAASAIAAWLELVAARAETVGLL 322

Query: 439 CMLKSPLFNFSEDDIFKICT------QRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
             LKSP       D  ++        QR +  + +E +           Q ++  + +  
Sbjct: 323 DFLKSPFVFADMADKAELVMVSEIALQRAKVLSGWEAVSDALTA-APAAQKMMTLLAQ-- 379

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN-----SYSSL 547
             A F         I   ++       R   +      + L       Q+        S 
Sbjct: 380 QAAGFTGRKTLCEWIAATQQMLVTLGMRDALQADAAGAQLLQLLQDVAQDCVQVGHTFSF 439

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
            E  + L                 V ++ ++ A+      V LV   ++    + ++ + 
Sbjct: 440 AEWRAFLNLQLEAKAFVQVNQDKRVVMLPLNGARLRSFDAVLLVGADAEHLPSQPMETLF 499

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
               +  + G+                  +  ++    +   LL      A+D +++   
Sbjct: 500 FANVVRRELGL---------------ATRESRQRQQLRDVTELL-----SANDCVVLSWQ 539

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
           ++ + E  +    W + +             K    I              P        
Sbjct: 540 AHKNGE-PNPVSPWIERLELCLARACLAPLAKHEVQIAPRHLQPTPVLMPAP-----AAP 593

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
           + + Q +        +  P +        L+           ++ +    +  + G  +H
Sbjct: 594 QLLPQKLSASGYNSLVACPYQFFATRMLGLS----------GIDDVSDMPEKRDYGDWLH 643

Query: 788 KLLQVIFTLPEHKRKNFITS--YCTKNAKLWPAKEYKNLLLS----ITRLLENPMMTTAM 841
           K+L       +              + +    A E      +           P     +
Sbjct: 644 KILAQFHQTLQEAPVPLAERAPLLQQISDRIFAHELDKSAAALGYYARWQKAMPAYLEWI 703

Query: 842 SCD-------SYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYK-THHHVPQE 892
           +            E      +     +I++ GR+D++  +      + +YK T+    ++
Sbjct: 704 AERESQGWHFVLGEEKFEKLLRWEDGEIVLHGRVDRMDENASGERAVLDYKSTNQGALRD 763

Query: 893 IEHIPYTHIAQLSIYEKI 910
                  H  QL  Y  +
Sbjct: 764 KLRQGEDH--QLPFYGLL 779


>gi|319407900|emb|CBI81554.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 1050

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 74/634 (11%), Positives = 178/634 (28%), Gaps = 65/634 (10%)

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQ-ESWTSYFDSLPQESSASILARRIAYTI-SNMIG 358
           R         W  + + ++ +       +  +  +   + ++     R +A  + + +  
Sbjct: 359 RDDYENVCADWSLIEASNEREEALAISIALRNAIEEPQKIAALITNDRNLARRVVAELQR 418

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS--VVGNDRFILTDHL 416
                ++     +       L+R   +            +  K    ++G +R  L + +
Sbjct: 419 FGIEANDSGGIPLAHTSPATLLRLLLENVFKPGDPIAFLSLLKHPLTILGQNRQRLREIV 478

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
              +L  + R   +  +       L++         +        +   +     + A  
Sbjct: 479 ENFELF-VLRGNPNHINLCECDQFLETW--------VQTYSYNMSDNCPLDLQKTEEARS 529

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVLDE 531
                   ++ +  LI   + C+ ++     + A +   +     F+  + NE    L  
Sbjct: 530 LCHLLVKAVEPLASLIKQDKECTINEVARATVEAFENFGRDDNNSFVHLYQNEAGKALSI 589

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVFL 590
           FL+  + ++      L E  +       T   + S   +  + I     ++      V L
Sbjct: 590 FLHELVNDQSGLKFHLYEWPAMFSALIATRCVSPSPGGHPRLFIWGTLESRLQTVDTVVL 649

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  +         +              P   +      +    L     +    +
Sbjct: 650 GSLNEGFWPSTTRNDAFLS------------RPMKMTLTLEPPEKRIGLAAHDFQWAMGM 697

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
             V M+RA+    I           S      + V       +   + +      K    
Sbjct: 698 NKVVMSRATRVNHIPSV-------PSRWLQRLETVVGKQVWKKICSRGETFLHWAKMLDK 750

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
             +     P   P+   +   +     +I    ++P      +   L P          L
Sbjct: 751 -TDTIGFTPRPCPVPPLDMRPRHFSVTEIETLRYNPYAIYAKKILRLKP----------L 799

Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
           ++L+      +RG++ H +L       + K  N   +  T  A      +  NL   I  
Sbjct: 800 KALIYSPYAADRGILYHAILA--AFCTQIKDPNVAHALATFLAIGRKEFDKLNLPPDIKA 857

Query: 831 LLEN--PMMTTAM--------SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IF 879
           +  +                     + EV+           + +SGR D+I I     + 
Sbjct: 858 IWWSIFENFAPFFIKWEQNLGPRKRHVEVAAQKT-PIGTTGVTLSGRADRIDILPDKMVE 916

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           I ++KT+       + +      QL++   +L  
Sbjct: 917 ILDFKTNTPPSS--KQVRALLHPQLALEAALLMQ 948


>gi|331092165|ref|ZP_08340995.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401937|gb|EGG81511.1| ATP-dependent nuclease subunit B [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 1110

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 76/742 (10%), Positives = 201/742 (27%), Gaps = 139/742 (18%)

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E    + E                    L + +        + +QES + +   +P++ +
Sbjct: 263 EERVEIVEPVCLPQNPAYRFRENPPLAFLEKHLFRYTTDSFSGEQESLSLHCAKMPKDET 322

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
           A      +   I +++           +  + +DI ++     +          +   Y 
Sbjct: 323 A-----FVMQEIRHLVR---------IKGYRYRDIAIIA---GNIATYADYMEKMAEVYT 365

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-- 459
           I +  + +  +  +  ++ + +L           S    L++ L  FS +DI  +     
Sbjct: 366 IPIFMDYKRSVLLNSFVEYIRSLLAMAEQNLTYESVFRFLRTGLTGFSREDIDILENYVI 425

Query: 460 -------RHETETVYEYIQKFANCGISKF----QHVIKYIHELIH--IAQFCSPHDF--- 503
                  +   E         +   + K        +K I +++     +  +  +    
Sbjct: 426 AMGIKGYKKWNEKWVRTYTGLSEEELEKVNEIRSEFVKMIQDVMSVLKKRRKTVTEITLT 485

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
                  +K +++ +        +             Q     ++     +E        
Sbjct: 486 LHSFFMQEKLQEKLVKYEETFQENNEPAL---AKEYAQIYRIVIEIFDKFIELLGDEYLP 542

Query: 564 AHS------------------ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
                                   +EV +  +   +  E  V+F V              
Sbjct: 543 LKEYCALLDAGFEEAKVGVIPPGIDEVIVGDMERTRLKEVKVLFFVGANDVFIPGNQAGN 602

Query: 606 -MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            +             I +  +      +                  LY+ +T+ S+++ +
Sbjct: 603 GLLSEQDRKIFEARKIPLAPNGKEKIYIQKFY--------------LYMNLTKPSEKVYV 648

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK----------------------LTN 702
                + + K      +   +   +      ++ +                         
Sbjct: 649 SYSKVSGDGKGIRPAYFLQDLKRLYPMLHVNEEEEKKFTELELTKKAGITYIISGLQRRR 708

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
               DEW+    S    E+     +  I+    +    +      +    E    + + +
Sbjct: 709 EEITDEWLELYTSYRKDEDWEGIIDNLIEAGFYKMPEDRLSKQMAEKLYGEKIEGSVTRL 768

Query: 763 DTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVIFT-----------LPEHK 800
           +          LS             +  + G I H+ +++              LP+  
Sbjct: 769 ERFAACAFAHFLSYGLRLKERKEYRFEAVDLGNIFHRAIEIFSRNLVKSGYTWTTLPKEV 828

Query: 801 RKNFITSYCTK------NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
            +  I            N  L+ +   + ++  I R+++      A++          G 
Sbjct: 829 AEELIEESVETSITDYGNTVLYSSARNEYMITRIKRMMK--RTVWALAKQLEK-----GD 881

Query: 855 INCPKKDIII-SGRIDQI--SISQQNIFI--FEYKTHHHVPQEIEHIPYTHIAQLSIYE- 908
                 ++    G+ID+I    ++  +++   +YKT       +  + +    QL++Y  
Sbjct: 882 FVPSGYEVSFGKGKIDRIDIYETEDRVYVKVIDYKTGTKTF-SLASLYHGLQLQLAMYMN 940

Query: 909 KILK---DSYPNKSLV-CLLIY 926
             ++      P K +V   L Y
Sbjct: 941 MAVELERRKQPEKKVVPAGLFY 962


>gi|326780309|ref|ZP_08239574.1| hypothetical protein SACT1_6184 [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660642|gb|EGE45488.1| hypothetical protein SACT1_6184 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 281

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 27/198 (13%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
               ++   RG ++H +L+ +F  P   R                 +    L        
Sbjct: 16  PEKPSEAATRGTLVHAVLERLFDAPAADRTAPRARALIPGQWDRLLESKPELSDLFAGDT 75

Query: 833 ENPMMTTAMSCDSY------------------SEVSVSGKINCPKKDIIISGRIDQISIS 874
           E   +T  +                        E+ V  ++      + + G ID++ ++
Sbjct: 76  EGERLTRWLGEAERLVDRWFSLEDPTRLEPAERELFVETELES---GLRLRGVIDRVDVA 132

Query: 875 Q-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
               + I +YKT      E    P   + Q++ Y  ++            L+Y+    V 
Sbjct: 133 PSGEVRIVDYKTGKAPRPEYSDGP---LFQMTFYALVIWRLKGVVPRRLQLVYLGSGDV- 188

Query: 934 IIPQNKLNKAFAEISTKI 951
            +  + +      +  K+
Sbjct: 189 -LTYDPVVADLERVERKL 205


>gi|311900006|dbj|BAJ32414.1| hypothetical protein KSE_66550 [Kitasatospora setae KM-6054]
          Length = 288

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 64/208 (30%), Gaps = 26/208 (12%)

Query: 757 LNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
           L+PS         L              +Q   RG ++H +L+ +F  P  +R       
Sbjct: 19  LSPSRAGDFMTCPLLYRLRVIDRLPEPPSQAATRGTLVHAVLERLFDHPPAERTPERARG 78

Query: 809 CTKNAKLWPAKEYKNLLL-------SITRLLENP--MMTTAMS-CDSYSEVSVSGKINCP 858
             +        E   L          +   L +   ++       D      V  ++   
Sbjct: 79  LLEPQWERLLGERPELAELFPGEPGELAGWLADAGKLVDRWFRLEDPTRLHPVERELYVE 138

Query: 859 KK---DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 + + G ID++ ++    + + +YKT     ++ E      + Q+  Y  ++   
Sbjct: 139 TALASGLPLRGYIDRVDVAPSGEVRLVDYKTGRAPSRDFEGKA---MFQMKFYALVVWRW 195

Query: 915 YPNKSLVCLLIYV-SEPKVFIIPQNKLN 941
                    L+Y+     V     ++ +
Sbjct: 196 KGVVPKRLQLVYLGGGGDVVTYDPDEAD 223


>gi|309782348|ref|ZP_07677074.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
 gi|308918884|gb|EFP64555.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
          Length = 947

 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/547 (10%), Positives = 141/547 (25%), Gaps = 82/547 (14%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
               ++    R L     + V     + L+   A   LM     +    D  + + ++KS
Sbjct: 326 AQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWVDVVQGDGDTAALLDLIKS 385

Query: 444 PL-------------------FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
           P                          ++     +     T            +S+    
Sbjct: 386 PFCLRDADAGTATPAWVAELERRVRRHNVSGGWGRLRRLVTDRPASDAEGEAKVSRLADR 445

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN----- 539
           +  + +   + +          +        +   R G +  D   + L++  R      
Sbjct: 446 LGVLADEAALWRRAGSATLDAWVTLLAGTLDRLHMRTGLQNDDAGRQLLDWIDRLRTSIH 505

Query: 540 ---EQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
              +  +  SL E  + L                   V I+ ++ A+      V +V   
Sbjct: 506 GSTDAGARFSLTEWRALLSMLLESAVFSEPSPPADRRVVILPLNGARMRRFDGVVVVGCD 565

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                    + +     +  + G+P                    +     E        
Sbjct: 566 DAQLPSAQPEWLFFSNDVRRELGLPD------------RAQRFAQQARDLAEVLL----- 608

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                 ++++    +    +      W + +              +T         + + 
Sbjct: 609 ---NQPEVVLTWQRHGGRGEPHRLSGWLERLQRRLAVSGVRIDTSVTL-------PSLQT 658

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
           ++   +         +   +           P +  +     L            LE + 
Sbjct: 659 TSQPTDMPAPAAPTLVPSTLSAAAYNSLRRCPYQFFVGRMLRL----------GELEEVS 708

Query: 775 SDNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNL--L 825
            + +  + G I+H +L                 R + + +   +      A++   L   
Sbjct: 709 DELEKRDIGEILHAILHRFHRQLLETPMHDPADRLSLLQTITDEQFGPLLAEDGNALRFY 768

Query: 826 LSITRLLEN-PMMTTAMSCDSYS----EVSVSGKINCPKKDII-ISGRIDQISISQQ-NI 878
                ++ +      A   D +     EV V   I  P +  + + GRID+I +  +  +
Sbjct: 769 RRWLGVMPSYLAWQAAREADGWRFEAGEVDVDTSITLPDERALRLRGRIDRIDVHDEHGV 828

Query: 879 FIFEYKT 885
            + +YKT
Sbjct: 829 AVLDYKT 835


>gi|256391609|ref|YP_003113173.1| RecB family exonuclease-like protein [Catenulispora acidiphila DSM
           44928]
 gi|256357835|gb|ACU71332.1| RecB family exonuclease-like protein [Catenulispora acidiphila DSM
           44928]
          Length = 351

 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 71/246 (28%), Gaps = 25/246 (10%)

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES----- 772
            P+            +     +   +  P    +N P  L+PS         L       
Sbjct: 19  APDPVVGAAATVGVPVAATTAVTAPVPVPATTTVNLPMALSPSRAADFMTCPLLFRFRVI 78

Query: 773 ---LLSDNQTFNRGLIIHKLLQVIFTLPEHKR-KNFITSYC--TKNAKLWPAKEYKNLLL 826
                  +    RG +IH +L+ +F LP  +R     +          +    E K L  
Sbjct: 79  DKLPERKSAAATRGTLIHAVLEHLFDLPTGQRTPTSASGMLSPEWERMVQADPELKALAE 138

Query: 827 SI---TRLLE-----NPMMTTAMSCDSYSEVSVSGKINCPK-KDIIISGRIDQISISQQN 877
                   L+               +          ++      +++ G +D++ ++   
Sbjct: 139 EAGGDEAWLKGAVDLLERYFRLEDPNRLEPAERELFVHARIADGLLLRGFVDRLDVAPNG 198

Query: 878 IF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE-PKVFII 935
              + +YKT        E      + Q+  Y  +L  +         L+Y+    ++   
Sbjct: 199 ALRVVDYKTGRAPGPAFEGKA---LFQMKFYALVLWKTRGVVPRRLQLMYLGGESQIVTY 255

Query: 936 PQNKLN 941
             ++ +
Sbjct: 256 DPDESD 261


>gi|315924913|ref|ZP_07921130.1| ATP-dependent deoxyribonuclease subunit B [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621812|gb|EFV01776.1| ATP-dependent deoxyribonuclease subunit B [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 1130

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 77/717 (10%), Positives = 187/717 (26%), Gaps = 105/717 (14%)

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL---WEQVVSQHDSQCNPQQESWT 330
           V + F+        +      +              L   W  +  Q   +  P+     
Sbjct: 259 VRQTFADLSERTKAAGSELKMMAVDPESPLDPELTWLEYEWFSLTPQP-WEKVPEHIDLH 317

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
              D   +       A   A TI  +   +           + +D ++LV        + 
Sbjct: 318 VCSDLWDE-------AECAARTIIRLTRDE---------GYRYEDFMILVGS---PETMG 358

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                    Y I    +    + +H  +  L A    +       S +   K+     + 
Sbjct: 359 SEIARALAMYNIPSFVDRLEPVMNHPLVAFLFAALDAVRIHLGGDSVMAYAKTAFSGLTP 418

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           + +  +              QK      ++F+       +  ++    S +     +L  
Sbjct: 419 EQVMALDNYAQTFGIKGWRWQKPFQK--NRFRDGRNGQKDKRYLWDLDSLNQVKDRLLSP 476

Query: 511 KKGRQQFISRFG--NEVIDVLDEFLN-----------FTLRNEQNSYSS----------L 547
               ++ +   G   E I+ L  FL                 +   Y            L
Sbjct: 477 LMSLKKEMQEAGCHRERIETLVHFLEMTNIPVQLDTMAAEAMDNGDYQRAAVNNQIWNIL 536

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIM---TVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             +  ++            A  + +R             +   V + D          I 
Sbjct: 537 MGVFDQINIALGEADDDFPAFIDILRSGIETYHIGVLPKQRDTVAITDALRSRSDGTKIL 596

Query: 605 KMHIMPSL---NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            +          +    P+     ++R       +++ +   Q     +LY+ ++R +++
Sbjct: 597 MILGANEGILPAEQNQFPVLTDWERTRIKDAGLALQNNRAYLQNRELTVLYMQVSRVTER 656

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFH----------NDERVKKIKLTNSINKDEWIA 711
           L      N ++ K   + +    +   F           ++  +  I  T +      + 
Sbjct: 657 LYCSYSMNDADGKAIRRSSLVRTLMKVFPNLEVRSSVRQDEWDLDWITGTPATINTLCLR 716

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
            + +           + ++      +       +       +P  L+ S ++        
Sbjct: 717 SKDNDPVSAAVASVLDPSLSTPGFFETDASLSPATATTLYEKPLHLSVSRVEKFNACPFA 776

Query: 772 SLLSDN-----------QTFNRGLIIHKLLQV-----------IFTLPEHKRKNFITSYC 809
             ++                + G I+H L++            + TL   +R   I ++ 
Sbjct: 777 QFVAFGLRPQLVIPYEVTAPDMGNIMHTLIERIFKWTETYDQTLDTLSAEERGALIQTFL 836

Query: 810 -----TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY-------SEVSVSGKINC 857
                  +  ++ +           R +    +    +  +        SE      +  
Sbjct: 837 NDLIQNTHDAVFDSSGQFRYRGRQLRRIGETTLAALSAQLAKGTFVYRDSEHFFKEPLTI 896

Query: 858 PKKD--IIISGRIDQIS---ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                   + G +D+I      +     + +YK+  H   +   I Y    QL IY 
Sbjct: 897 GGDGKAAELRGFVDRIDSFSDGEDTFVKVIDYKSSAH-DLDAAEIYYGLSLQLLIYM 952


>gi|228971237|ref|ZP_04131866.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228788472|gb|EEM36422.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 1166

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADE---------KYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKEVMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 582 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 639

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 640 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|228938358|ref|ZP_04100969.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228977846|ref|ZP_04138228.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis Bt407]
 gi|228781864|gb|EEM30060.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis Bt407]
 gi|228821304|gb|EEM67318.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938867|gb|AEA14763.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 1171

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADE---------KYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKEVMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|228906865|ref|ZP_04070734.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 200]
 gi|228852869|gb|EEM97654.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 200]
          Length = 1171

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADE---------KYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|118469031|ref|YP_888197.1| RecB family protein exonuclease [Mycobacterium smegmatis str. MC2
           155]
 gi|118170318|gb|ABK71214.1| RecB family protein exonuclease [Mycobacterium smegmatis str. MC2
           155]
          Length = 291

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 67/214 (31%), Gaps = 31/214 (14%)

Query: 749 NDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                   L+PS      +  L              +    RG ++H  L+ ++ LP  +
Sbjct: 9   AAGRRRPALSPSRASDFKQCPLLYRFRAIDRLPEPRSTAQLRGTLVHAALEDLYGLPAQE 68

Query: 801 R---------KNFITSYCTKNAKLWPAKEYKNLLLSITRLL------ENPMMTTAMSCDS 845
           R         +         + +L    E   LL     LL      E+P          
Sbjct: 69  RVPDTALSLVEPAWDRVVAADPELASLAERDVLLREARALLTGYYRLEDPT---RFDPQC 125

Query: 846 YSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
             E  +  ++       ++ G +D+I ++    + + +YKT        E   +  + Q+
Sbjct: 126 -CEQLIEVELA---DGTLLRGYVDRIDVAPTGEVRVVDYKTGKAPAAARELAEFKALFQM 181

Query: 905 SIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
             Y   L  S         L+Y+++ +V      
Sbjct: 182 KFYAVALLRSREVMPSRLRLLYLADKQVLDYSPA 215


>gi|182625393|ref|ZP_02953166.1| ATP-dependent nuclease subunit B [Clostridium perfringens D str.
            JGS1721]
 gi|177909390|gb|EDT71842.1| ATP-dependent nuclease subunit B [Clostridium perfringens D str.
            JGS1721]
          Length = 1158

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 81/708 (11%), Positives = 192/708 (27%), Gaps = 152/708 (21%)

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A  I  ++           +  + KDI V+ R   D      +   +  +Y+I    
Sbjct: 319  EFVAKDILRLVRE---------KQYRFKDISVICR---DVDNYEKVVSAIFAEYEIPYYI 366

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL----FNFSEDDIFK-----IC 457
            + +  +  +  I  + +    I       S    LK+ L          ++       + 
Sbjct: 367  DKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGIEGAELIDELENYVL 426

Query: 458  TQRHETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIA---------------- 495
                + +   E    +            + +  ++ ++++                    
Sbjct: 427  AYGIKGKKWMEEWVNYSSSILKEEEISEENKQRLERLNDIRESIVTPLDEFNKQCKGKKT 486

Query: 496  ---QFCSPHDFFTLILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQ 541
                    ++F    L       +++  F             EV D+  + L   +    
Sbjct: 487  LKEFATILYEFLDSKLDIMDTIDKYVEYFKENDMAIEAKEYSEVRDIFIDVLEQAVDVLG 546

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            N    L E +  L       +        ++V I  +   K   +  ++++     V   
Sbjct: 547  NEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVNDGVLPS 606

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               ++  +  +  +          S +R  I              E   L+Y   T A +
Sbjct: 607  ASKEEGILSDNDREILLEKGISLASDTRTKIF-------------EEQFLVYTAFTIAEE 653

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L++         K          +     N +   +     +   D+  A   + +   
Sbjct: 654  YLVVTYPLADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVNDKYDKISAKLPTLNELM 713

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------------------ 756
                +  +        + +        K      Y+                        
Sbjct: 714  IAIRKNYDGADIEEYWKYVYDWYLREPKWKERIEYVKKGLEYTNLENNISKEKAKKLYED 773

Query: 757  ------LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ-------- 791
                  L+ S ++   +              +  + +    + G  +H++L         
Sbjct: 774  NKNKISLSVSRLERYAQCPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFTNEIKE 833

Query: 792  ---VIFTLPEHKRKNFITSYCTKNAK------LWPAKEYKNLLLSITRLLE------NPM 836
                   L +   +N I S      K      L  +K Y        R+L       +  
Sbjct: 834  KDLKWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQ 893

Query: 837  MTTAMSCDSYSEVSV-------SGKINCP-KKDIIISGRIDQIS---ISQQNIF-IFEYK 884
            M  +      +E++        S K++ P  +   ++GRID++    +  +    I +YK
Sbjct: 894  MKRSDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYK 953

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
            T      ++         QL +Y   L    ++   N+++   ++Y  
Sbjct: 954  TGSKKF-DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFR 1000


>gi|168214038|ref|ZP_02639663.1| ATP-dependent nuclease, subunit B [Clostridium perfringens CPE str.
            F4969]
 gi|170714493|gb|EDT26675.1| ATP-dependent nuclease, subunit B [Clostridium perfringens CPE str.
            F4969]
          Length = 1158

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 82/708 (11%), Positives = 190/708 (26%), Gaps = 152/708 (21%)

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A  I  ++           +  + KDI V+ R   D      +   +  +Y+I    
Sbjct: 319  EFVAKDILRLVRE---------KQYRFKDISVICR---DVDNYEKVVSAIFAEYEIPYYI 366

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF-------------------- 446
            + +  +  +  I  + +    I       S    LK+ L                     
Sbjct: 367  DKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGVEGAELIDELENYVL 426

Query: 447  --NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS----- 499
                      +       +    E I +     + +   + + I   +            
Sbjct: 427  AYGIKGKKWMEEWVNYSSSILKEEEISEENKQRLERLNDIRETIVAPLDEFNKQCKGKKT 486

Query: 500  -------PHDFFTLILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQ 541
                    ++F    L       +++  F             EV D+  + L   +    
Sbjct: 487  LKEFATILYEFLDSKLDVMDTIDKYVDYFKENDMAIEAKEYSEVRDIFIDVLEQAVDVLG 546

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            N    L E +  L       +        ++V I  +   K   +  ++++     V   
Sbjct: 547  NEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVNDGVLPS 606

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               ++  +  +  +          S +R  I              E   L+Y   T A +
Sbjct: 607  ASKEEGILSDNDREILLEKGISLASDTRTKIF-------------EEQFLVYTAFTIAEE 653

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L++         K          +     N +   +     +   ++  A   + +   
Sbjct: 654  YLVVTYPLADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVNDKYEKISAKIPTLNELM 713

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------------------ 756
                ++ +  +     + +        K      Y+                        
Sbjct: 714  IAIRKKYDGAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYED 773

Query: 757  ------LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ-------- 791
                  L+ S ++   +              +  + +    + G  +H++L         
Sbjct: 774  NKNKISLSVSRLERYAQCPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFTNEIKE 833

Query: 792  ---VIFTLPEHKRKNFITSYCTKNAK------LWPAKEYKNLLLSITRLLE------NPM 836
                   L +   +N I S      K      L  +K Y        R+L       +  
Sbjct: 834  KDLKWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQ 893

Query: 837  MTTAMSCDSYSEVSV-------SGKINCP-KKDIIISGRIDQIS---ISQQNIF-IFEYK 884
            M  +      +E++        S K++ P  +   ++GRID++    +  +    I +YK
Sbjct: 894  MKRSDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYK 953

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
            T      ++         QL +Y   L    ++   N+++   ++Y  
Sbjct: 954  TGSKKF-DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFR 1000


>gi|19552714|ref|NP_600716.1| endonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|62390382|ref|YP_225784.1| endonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|21324268|dbj|BAB98893.1| RecB family exonuclease [Corynebacterium glutamicum ATCC 13032]
 gi|41325719|emb|CAF21508.1| RecB family exonuclease [Corynebacterium glutamicum ATCC 13032]
          Length = 278

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 70/228 (30%), Gaps = 34/228 (14%)

Query: 752 NEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK- 802
             P  L+PS      +  L                   +G ++H +L+ +  LP  +R+ 
Sbjct: 12  PRPLALSPSRAGDYQQCPLLYRFRAIDRLPEPKTVAQVKGTLVHAVLEYMHKLPREEREY 71

Query: 803 -NFITSYCTKNAKL-WPAKEYKNLL--LSITRLLENPM--MTTAMS-------CDSYSEV 849
              +       A++     E K L+    +   L +    +              +  E+
Sbjct: 72  PAMVKQLKPTWAQMCEEDAELKELVPEDELYDFLVDSRTLLRGYFEMENPQGFDATECEM 131

Query: 850 SVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            V   +      + + G ID++  +    + + +YKT      +          Q+  Y 
Sbjct: 132 YVDTVLP---NGVPVRGFIDRVDTAPTGQVRVIDYKTGKKPKPQWSQQA---QFQMLFYA 185

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFIIPQNK-----LNKAFAEISTKI 951
            +    +        L+Y+       +  ++       +   ++  KI
Sbjct: 186 LVYWRMFNEIPAQLRLMYLKVNDSMFLNPSREQLEFFERDLGDLWAKI 233


>gi|229010529|ref|ZP_04167731.1| ATP-dependent nuclease, subunit B [Bacillus mycoides DSM 2048]
 gi|228750727|gb|EEM00551.1| ATP-dependent nuclease, subunit B [Bacillus mycoides DSM 2048]
          Length = 1171

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 78/719 (10%), Positives = 197/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKYHGEASVTISTAANLRAEVEGVAREIRRLVADE---------DYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDASEMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRVRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKMSLSMFTEVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V +  +  ++  +    F++     V              L+D+    +     +   
Sbjct: 587 DQVLVANIDHSRLSDIKATFIIGVNEGVIPA----APMDEGMLSDEERNVLTAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 --------------------FSPIKNDINEPYIL-------NPSTIDTKGKTN------- 769
                                   K   +    L       + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT---SYCTKNAKLWPAKEYK 822
                E  +      + G + H  L+ I      + + +       C   + L   +   
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADKLLRENRTWADLSIKECEHLSALVIEEIAP 873

Query: 823 NLLLSIT----------RLLENPMMTT--AMSCDSYS----EVSVSGKINCPKKDII--- 863
            L   I           + L+  +  T   +   + S     V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|89891075|ref|ZP_01202583.1| putative ATP-dependent DNA helicase [Flavobacteria bacterium BBFL7]
 gi|89516719|gb|EAS19378.1| putative ATP-dependent DNA  helicase [Flavobacteria bacterium BBFL7]
          Length = 1605

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++ DE QD +  +W++I  + +              + AVGD+ Q+IYSF G+    + +
Sbjct: 1160 LMFDEFQDINKDEWDLIDLIIQKA--------ENPRVIAVGDDDQNIYSFRGSSNAFMSK 1211

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
             ++             ++  LP ++RS  +I+   +KV    +N 
Sbjct: 1212 FRKHYG---------ATLYTLPKNYRSFPEIVDFNNKVLFYLKNR 1247


>gi|228899818|ref|ZP_04064064.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 4222]
 gi|228859837|gb|EEN04251.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis IBL 4222]
          Length = 1166

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANE---------KYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 582 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 639

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 640 -----------RQTLLEEQFVMYQMVTRASERLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|229132030|ref|ZP_04260893.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST196]
 gi|228651430|gb|EEL07402.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST196]
          Length = 1166

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 78/719 (10%), Positives = 197/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKYHGEASVTISTAANLRAEVEGVAREIRRLVADE---------DYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDASEMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRVRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKMSLSMFTEVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V +  +  ++  +    F++     V              L+D+    +     +   
Sbjct: 582 DQVLVANIDHSRLSDIKATFIIGVNEGVIPA----APMDEGMLSDEERNVLTAAGIELAP 637

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 638 TT---------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 --------------------FSPIKNDINEPYIL-------NPSTIDTKGKTN------- 769
                                   K   +    L       + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT---SYCTKNAKLWPAKEYK 822
                E  +      + G + H  L+ I      + + +       C   + L   +   
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADKLLRENRTWADLSIKECEHLSALVIEEIAP 868

Query: 823 NLLLSIT----------RLLENPMMTT--AMSCDSYS----EVSVSGKINCPKKDII--- 863
            L   I           + L+  +  T   +   + S     V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|75760178|ref|ZP_00740236.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492342|gb|EAO55500.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 1171

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANE---------KYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRASERLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|218896176|ref|YP_002444587.1| ATP-dependent nuclease, subunit B [Bacillus cereus G9842]
 gi|251764580|sp|B7IL83|ADDB_BACC2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|218542167|gb|ACK94561.1| ATP-dependent nuclease, subunit B [Bacillus cereus G9842]
          Length = 1171

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 79/765 (10%), Positives = 203/765 (26%), Gaps = 167/765 (21%)

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299  EARPNEKFNGQASVTISTAANLRAEVEGVAREIRKLVANE---------KYRYRDIAVLL 349

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350  RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441  LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
            +K+ L               D     C         +     +                 
Sbjct: 407  VKTELLYPLDVRKETMREEMDKFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482  --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
              + + + I+ L                     +      + F   +     L   + R 
Sbjct: 467  SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEVVYLFLEELDVPKKLEELRIRA 526

Query: 516  Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
            +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527  EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587  DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                       + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645  -----------RQTLLEEQFVMYQMVTRASERLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
             N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694  PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744  ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                        +  ++   +    + S ++   +         
Sbjct: 754  VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770  ----LESLLSDNQTFNRGLIIHKLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYK 822
                 E  +      + G + H  L+ I            +     C   + L   +   
Sbjct: 814  GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWSDLSIKECEHLSVLVIEEIAP 873

Query: 823  NLLLSIT----------RLLENPMMTT--AMSCDSYS----EVSVSGKINCPKKDII--- 863
             L   I           + L+  +  T   +   + S     V +           +   
Sbjct: 874  LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864  -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       + GRID++  ++      + I +YK+      ++  + Y    Q+  Y 
Sbjct: 934  EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTYL 992

Query: 909  KIL---KDSYPNKSLVCL-----LIYVSEPKVFIIPQNKLNKAFA 945
             ++      +  K          L +     +  +  +       
Sbjct: 993  DVVTSNAQMW-MKKGQAASPAGVLYFHIHNPIVEMKGDASEAEIE 1036


>gi|52549659|gb|AAU83508.1| DNA helicase II [uncultured archaeon GZfos29E12]
          Length = 329

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 36/204 (17%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
            + YE A  +       ++I    DL KK   S  I      ++ +IL+DE QD + ++ 
Sbjct: 50  LSEYEAAMME-------EIIYFAVDLAKKLPSSQLI-----DKVEYILVDEYQDFNKLEQ 97

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E I  L +D           + L  VGD  QSIYSF  A P  +L               
Sbjct: 98  EFINILAKD----------SKLLLVVGDPNQSIYSFKFAYPSGILDFANR---------N 138

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENA-----QGLSEDSTTTIRHRSSRIGQVGTV 308
                 LP S RS   ++ V +++      +     + L        + +S    Q    
Sbjct: 139 DVEKYSLPFSGRSPKKVINVANQLLLQNNPSQTNLIKSLPNKEEGKRKFKSFENQQEEFY 198

Query: 309 QLWEQVVSQHDSQCNPQQESWTSY 332
            +   ++        P+       
Sbjct: 199 FVLSSIIQCLKKDIEPKNIIILVP 222


>gi|301162346|emb|CBW21891.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
          Length = 594

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 25/140 (17%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              + +  +I  T  L K+      I          IL+DE QDT+L+ + ++  L  D 
Sbjct: 194 KNAIPYNAIITLTIKLFKE---QIGILEFYRNYYTSILVDEFQDTNLLSYWLLNFLITDK 250

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                       +  +GD  Q IY F GA P  +   +               +I L  +
Sbjct: 251 T----------NILLLGDSLQRIYGFIGAVPNLLSHAQNTF---------NLQLISLEKN 291

Query: 264 FR--STADILTVVDKVFSIP 281
           +R  S  ++L + DK+    
Sbjct: 292 YRFASNENMLQL-DKIIRQN 310



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 33/201 (16%)

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLDEFLNFTLRNEQNSYSSLQELI 551
                ++F  L+    K  ++   +  +++ +         +   L   +  +  L    
Sbjct: 397 NRKCLYEFIELLKSNSKITKKIGKKHIDKIREIYINNDSVLVKALLELLEIFWVQLFVDY 456

Query: 552 SELEQYPPTIKRAHSANHNEVR-----------IMTVHTAKGLESPVVFLVDTGSQVFSH 600
           S L           +  HN ++           I TVH AKGLE   V L D     F +
Sbjct: 457 SFLSNEDKINLIKDTFEHNGIKQYMEFLNTSIIISTVHAAKGLEWDYVILPDMEKDSFPN 516

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                                +       N  + ++    + +  E   + YV +TRA  
Sbjct: 517 ------------------WYGLCGRCKNGNDCNFVMTKDIEKSFFEELSVFYVAVTRAKK 558

Query: 661 QLIICKHSNTSNEKKSNQRTW 681
           Q+           +   ++ +
Sbjct: 559 QVFFTASHKQLTNRGIFEKNY 579


>gi|294787985|ref|ZP_06753229.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella
            muelleri ATCC 29453]
 gi|294484278|gb|EFG31961.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella
            muelleri ATCC 29453]
          Length = 1602

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 22/206 (10%)

Query: 150  EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            +D+I      ++  +V      K+      +++DE QD + IQ+E+I++L          
Sbjct: 1149 DDIIEQAVAKIRSGEVENNRIAKL-----VLVLDEAQDINAIQFELIKTLM--------A 1195

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +    + AVGD+ Q+IYSF GA PK +                  +  EL  ++RS  +
Sbjct: 1196 QNEEMRVIAVGDDDQTIYSFAGATPKYMQTLLTEFG---------ATTYELLENYRSKRN 1246

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
            I+   ++   +                    R        L   +     +    Q  + 
Sbjct: 1247 IVQFCNRFADLLTERLKNHPVIAVQPEAGEVRYVAFSGGILPNLLAKIQAAYKTGQSVAL 1306

Query: 330  TSYFDSLPQESSASILARRIAYTISN 355
             +  +      S  +    I   +  
Sbjct: 1307 LTQTNEEAIWLSGQLRQAFIPCKLVQ 1332


>gi|260170439|ref|ZP_05756851.1| pathogenesis-related protein [Bacteroides sp. D2]
 gi|315918794|ref|ZP_07915034.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692669|gb|EFS29504.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 617

 Score = 83.4 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 83/536 (15%), Positives = 156/536 (29%), Gaps = 102/536 (19%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           ++  L   D+I     ++   ++   I   I Q+    +IDE QDT        + L   
Sbjct: 167 EHNALSHADVIKIGAKMIVDNELLQKI---IAQQYPFFMIDESQDTK-------KELIAA 216

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
           FF  +       TL   GD+KQ IY+                ++      Q++      +
Sbjct: 217 FFEIERNVDDNFTLGLFGDQKQRIYTDGE-------------ERIVEIIPQEWEKPIKEM 263

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++R    I+ + +K+    +               +S R            + ++ D   
Sbjct: 264 NYRCAKRIVELANKIGCQIDVY-----------AKQSPRDNAPEGTVRLFLIKNKDDLNK 312

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
              +         +  +   +  A  +   I        + +  +    +  D++  V K
Sbjct: 313 IELESKVIQMMADITGDQMWNRDATNVKVLILE-----HMMAARRLGFAEFFDVMHEVDK 367

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
            K T     L + L +D  I       F L +++   D ++    +            L 
Sbjct: 368 YKQT-----LLQGLVSDMDIFTKLI--FPLVENVLKNDNLSALNLLK-----------LH 409

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           SPL                    + E  Q  A   + K + VI  +  +       +  +
Sbjct: 410 SPL--------------------LRELPQNKAFQILDKCKKVIDILANM--DFNVVTIRE 447

Query: 503 FFTLILGAK-KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
             T +         + + R    V       LN    +++     +   I  ++     I
Sbjct: 448 LITYVCTTHIFVVPEILKRASKMV-------LNDLTEDDKEDMDIVCSWIKVMDLPVNQI 500

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           KR     +      T    KGLE   V +V            +                 
Sbjct: 501 KRFDDYVNRRTMFDTHQGVKGLEFERVLVV------IDDNESRGFLFSYDKLLGVKPLSD 554

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                             K+++ E   RL YV  TRA + L I  ++N     K  
Sbjct: 555 GDIKNKETG---------KETSMERTTRLFYVTCTRARNSLAIVMYTNAPETAKET 601


>gi|315036417|gb|EFT48349.1| UvrD/REP helicase [Enterococcus faecalis TX0027]
          Length = 597

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            ++  Y    +KN  +DF+ +++    +L    V++ +   I   I  I +DE QDT  +
Sbjct: 162 QVSEMYHTMLEKNKEIDFDMILLVAYKILT---VNSNVARNIASNIRAIYVDEFQDTREL 218

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ VI  L ++    ++          VGD  Q+IY       K V   + +        
Sbjct: 219 QYNVIAKLLQNNPQIQS--------MFVGDIDQAIYGSLDGIAKSVEELEMLTSHTF--- 267

Query: 252 GQKFSIIELPLSFRSTADILTV 273
                   L   +RS   ++  
Sbjct: 268 ----QSKTLHGCYRSNQRLVDF 285


>gi|282926721|ref|ZP_06334349.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus
           aureus A9765]
 gi|282592148|gb|EFB97170.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus
           aureus A9765]
          Length = 575

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            ++  Y    +KN  +DF+ +++    +L    V++ +   I   I  I +DE QDT  +
Sbjct: 140 QVSEMYHTMLEKNKEIDFDMILLVAYKILT---VNSNVARNIASNIRAIYVDEFQDTREL 196

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ VI  L ++    ++          VGD  Q+IY       K V   + +        
Sbjct: 197 QYNVIAKLLQNNPQIQS--------MFVGDIDQAIYGSLDGIAKSVEELEMLTSHTF--- 245

Query: 252 GQKFSIIELPLSFRSTADILTV 273
                   L   +RS   ++  
Sbjct: 246 ----QSKTLHGCYRSNQRLVDF 263


>gi|261206947|ref|ZP_05921636.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566766|ref|ZP_06447179.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|260078575|gb|EEW66277.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161443|gb|EFD09330.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 328

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            ++  Y    +KN  +DF+ +++    +L    V++ +   I   I  I +DE QDT  +
Sbjct: 162 QVSEMYHTMLEKNKEIDFDMILLVAYKILT---VNSNVARNIASNIRAIYVDEFQDTREL 218

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ VI  L ++    ++          VGD  Q+IY       K V   + +        
Sbjct: 219 QYNVIAKLLQNNPQIQS--------MFVGDIDQAIYGSLDGIAKSVEELEMLTSHTF--- 267

Query: 252 GQKFSIIELPLSFRSTADILTV 273
                   L   +RS   ++  
Sbjct: 268 ----QSKTLHGCYRSNQRLVDF 285


>gi|291301936|ref|YP_003513214.1| RecB family exonuclease-like protein [Stackebrandtia nassauensis
           DSM 44728]
 gi|290571156|gb|ADD44121.1| RecB family exonuclease-like protein [Stackebrandtia nassauensis
           DSM 44728]
          Length = 267

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 66/228 (28%), Gaps = 33/228 (14%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPE 798
           + ++   P  L+PS  +      L+             +    +G ++H +L+ ++ L  
Sbjct: 1   MSSEFRAPVTLSPSRANDFKSCPLKYRYRVIDKLPEPTSSAQVKGTLVHSVLERLYDLGA 60

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
            +R +            W  K  ++       ++++             E   + +    
Sbjct: 61  AERTSG--RALELVEPEW--KRLRDADAEAAGVVDDES-AWIAEVRKLVEAYFAVEDPRR 115

Query: 859 K--------------KDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
                            + + G ID++ ++    I + +YKT        E      + Q
Sbjct: 116 LQPAERECLVEATTADGVRLKGYIDRLDVAPTGEIRVVDYKTGGVPR---EAFRAEALFQ 172

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           L  Y   L         V  LIY+ + +                   I
Sbjct: 173 LKFYAVALWHVRGVVPTVLRLIYLKDGQAIDYSPT--EAELRATERNI 218


>gi|210617938|ref|ZP_03291824.1| hypothetical protein CLONEX_04056 [Clostridium nexile DSM 1787]
 gi|210149077|gb|EEA80086.1| hypothetical protein CLONEX_04056 [Clostridium nexile DSM 1787]
          Length = 1134

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/653 (10%), Positives = 178/653 (27%), Gaps = 123/653 (18%)

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               I +  + R  + ++I ++     D          +  +Y+I +  + +  +  +  
Sbjct: 325 AAQKIRNLARTRGYRYREIAIIA---SDLNTYGNQIEKIFGEYQIPIFMDHKRSILLNSF 381

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF--------------------KIC 457
           ++ + +L   +       S    L++ L  FS+++I                      I 
Sbjct: 382 VEYVRSLLAMVEQNFSYESVFRYLRTGLTGFSDEEIDIVENYVIALGIRGYKKWQEKWIR 441

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK------ 511
             R   ET  E I       + + + V   + +  +          +  ++  +      
Sbjct: 442 RARGMEETELERINDIKERFLIQVEDVTMVLTK-RNKTVSEVTKALYDFLVKEELQKKVK 500

Query: 512 --------KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
                    G       +G +V  ++ E  +  +        +L+E    L+      K 
Sbjct: 501 EYEIRFGNDGELALEKEYG-QVYRIVIELFDKFVELLGEEQIALKEYCELLDAGLEEAKV 559

Query: 564 AHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK-HIKKMHIMPSLNDDPGIPIW 621
                  ++V    +   +  +   VFL+         K +   +             + 
Sbjct: 560 GVIPPSLDQVVAGDIERTRIKDIKAVFLLGANDMYIPGKENAGGILSEHDRELFQKGGVV 619

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           +         +                  LY+ MT+ S+QL +     +++ K       
Sbjct: 620 LAPGAKEKAFIQKFY--------------LYLLMTKPSEQLYVTYSKVSADGKTLRPAYL 665

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
              +   +   E        +         + +     +          ++L    +   
Sbjct: 666 IQDLRRMYKKMEIQDADCQPDKKELTPKSGFAYLIEKLQKKHEGLGTEWQELYTWYRQNP 725

Query: 742 KLFSPIKNDINE---------------------PYILNPSTIDTKGKTN----------- 769
           K    I+  +                           + + ++                 
Sbjct: 726 KWRKKIEQIVEACFYEKPKDGLTTRTAQRLYGTILENSVTRLEKFSACAYAHFLSYGLNL 785

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
            E      Q  + G I H  ++      E +   + T    +  +L      ++++    
Sbjct: 786 REREEYTFQAIDLGNIFHSAIEHFAKKLEAEGYTWTTLPEVRREELIEESVEESIVDYGN 845

Query: 830 RLLENP--------MMTTAMSCDSYS---------------EVSV-------SGKINCPK 859
            +L +          +   M    ++               E+S        +  I    
Sbjct: 846 TILYSSARNEYIIKRLKRMMRRTVWALTKQLEKGDFMPGGYEISFGGASGLSTSDIALDG 905

Query: 860 KDII-ISGRIDQI--SISQQNIFI--FEYKTHHHVPQEIEHIPYTHIAQLSIY 907
              + + G+ID++     + N+++   +YKT      ++  + Y    QL +Y
Sbjct: 906 HGRMRLRGKIDRVDICEDEDNVYVKVIDYKTGAKAF-DLGELYYGLQLQLVLY 957


>gi|15923403|ref|NP_370937.1| hypothetical protein SAV0413 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156978741|ref|YP_001441000.1| hypothetical protein SAHV_0410 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|221141393|ref|ZP_03565886.1| hypothetical protein SauraJ_07103 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|255005210|ref|ZP_05143811.2| hypothetical protein SauraM_02045 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257878681|ref|ZP_05658334.1| UvrD/REP helicase [Enterococcus faecium 1,230,933]
 gi|289168158|ref|YP_003446427.1| hypothetical protein smi_1319 [Streptococcus mitis B6]
 gi|294615439|ref|ZP_06695311.1| UvrD/REP helicase subfamily [Enterococcus faecium E1636]
 gi|304380425|ref|ZP_07363104.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|14246181|dbj|BAB56575.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720876|dbj|BAF77293.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257812909|gb|EEV41667.1| UvrD/REP helicase [Enterococcus faecium 1,230,933]
 gi|269939991|emb|CBI48366.1| putative helicase [Staphylococcus aureus subsp. aureus TW20]
 gi|288907725|emb|CBJ22562.1| conserved hypothetical protein [Streptococcus mitis B6]
 gi|291591721|gb|EFF23358.1| UvrD/REP helicase subfamily [Enterococcus faecium E1636]
 gi|302750303|gb|ADL64480.1| UvrD/REP helicase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304341032|gb|EFM06953.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|323465474|gb|ADX77627.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
 gi|329313130|gb|AEB87543.1| UvrD/REP helicase [Staphylococcus aureus subsp. aureus T0131]
          Length = 597

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            ++  Y    +KN  +DF+ +++    +L    V++ +   I   I  I +DE QDT  +
Sbjct: 162 QVSEMYHTMLEKNKEIDFDMILLVAYKILT---VNSNVARNIASNIRAIYVDEFQDTREL 218

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ VI  L ++    ++          VGD  Q+IY       K V   + +        
Sbjct: 219 QYNVIAKLLQNNPQIQS--------MFVGDIDQAIYGSLDGIAKSVEELEMLTSHTF--- 267

Query: 252 GQKFSIIELPLSFRSTADILTV 273
                   L   +RS   ++  
Sbjct: 268 ----QSKTLHGCYRSNQRLVDF 285


>gi|228944849|ref|ZP_04107212.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|228814877|gb|EEM61135.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
          Length = 1171

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 74/765 (9%), Positives = 208/765 (27%), Gaps = 167/765 (21%)

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299  EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350  RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441  LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
            +K+ L               D+    C         +     +                 
Sbjct: 407  VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482  --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
              + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467  SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516  Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
            +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527  EESGDFLFATDHEQVWEEVMSLLDMFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587  DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                       + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643  TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
             + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694  PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744  ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                        +  ++   +    + S ++   +         
Sbjct: 754  VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770  ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                 E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814  GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 873

Query: 809  CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
              +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874  LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864  -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       + GRID++  ++      + I +YK+      ++  + Y    Q+  Y 
Sbjct: 934  EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-SKSLDLTEVYYGLALQMLTYL 992

Query: 909  KIL---KDSYPNKSLVCL-----LIYVSEPKVFIIPQNKLNKAFA 945
             ++     ++  K          L +     +  +  +       
Sbjct: 993  DVVTSNAQTW-MKKGHAASPAGVLYFHIHNPIVEVKGDASEAEIE 1036


>gi|294628485|ref|ZP_06707045.1| RecB family exonuclease [Streptomyces sp. e14]
 gi|292831818|gb|EFF90167.1| RecB family exonuclease [Streptomyces sp. e14]
          Length = 262

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 57/195 (29%), Gaps = 21/195 (10%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
               ++   RG ++H +L+ +F  P  +R                      L+       
Sbjct: 12  PEKPSEAATRGTLVHAVLERLFDAPAAERTPPRAKALIPGQWDRLRASRPELVELFADDA 71

Query: 833 ENPMMTTAMSCDSY-SEVSVSGKINCPKK--------------DIIISGRIDQISISQ-Q 876
           +   +   +S      E   + +     +               + + G ID++ ++   
Sbjct: 72  DGERLARWLSEAERLVERWFTLEDPSRLEPAERELFVEAELASGLRLRGIIDRVDVAPTG 131

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
            + I +YKT               + Q+  Y  ++            L+Y+    V  + 
Sbjct: 132 EVRIVDYKTGKAPRP---EYAEGALFQMKFYALVVWRLKKVVPRRLQLVYLGSGDV--LT 186

Query: 937 QNKLNKAFAEISTKI 951
            + +      I  K+
Sbjct: 187 YDPVPADLERIERKL 201


>gi|215428675|ref|ZP_03426594.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis
           T92]
          Length = 307

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 87/320 (27%), Gaps = 48/320 (15%)

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            +++ H A G E  +V +      ++ +   +   +      D    +    S       
Sbjct: 1   MVLSAHAALGHEWDLVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTKDASM------ 54

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK----SNQRTWYDMVYDS 688
                  +     E  RLL   M RA  +L++    + +             ++++   +
Sbjct: 55  -------RAPLLAEERRLLVTAMGRARRRLLVTAVDSDAGGGGHEAVLPSAFFFEIAQWA 107

Query: 689 FHNDERVKKIKLTNS--------------INKDEWIAYEWSTHHPENTPLEREETI---- 730
             + E V    ++                +      A + +      T L R        
Sbjct: 108 DGDGEPVAMQPVSAPRVLSAAAVVGRLRAVVCAPACAVDDADRDCAATQLARLAKAGVPG 167

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF-------NRG 783
               +   +     S    D ++   L PST+       L  L   +            G
Sbjct: 168 ADPSEWHGLAPVSTSDPLCDSDDLVTLTPSTLQALNDCPLRWLAERHGGTNTRELPSAVG 227

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSY--CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
            ++H L                  +      A+ + A E       I   ++      A 
Sbjct: 228 SVLHALFAEPGRSESQLLAELDRVWGHLPFGAQWYSANELARHRAMIQAFVQ----WRAQ 283

Query: 842 SCDSYSEVSVSGKINCPKKD 861
           S    +EV V   I+   +D
Sbjct: 284 SRSELTEVGVGVDIDGALED 303


>gi|196037563|ref|ZP_03104874.1| ATP-dependent nuclease, subunit B [Bacillus cereus NVH0597-99]
 gi|196031805|gb|EDX70401.1| ATP-dependent nuclease, subunit B [Bacillus cereus NVH0597-99]
          Length = 1171

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 199/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H +L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAVLKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|228957510|ref|ZP_04119262.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802102|gb|EEM48967.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 1171

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADE---------KYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|221485205|gb|EEE23495.1| hypothetical protein TGGT1_105110 [Toxoplasma gondii GT1]
          Length = 2892

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 93/339 (27%), Gaps = 71/339 (20%)

Query: 8    SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
            +++   + +   L      +    +   S     G  T  +  +       ++       
Sbjct: 1098 AVDSDPDDLLDFLTDEEEEESGGFHSQHSGLPAAGRTTRREPGEACGGRQSSRGPM-APH 1156

Query: 68   LLSSFFLTQKFTPQKN----IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
            + S    T+  T  K     +      K S    + LK    +   +  ++    + + T
Sbjct: 1157 MGSRVGSTKSRTTWKEVDMFLRLVRKCKFSEAFLDTLKTENAQLYALTRQYAAL-LRQQT 1215

Query: 124  LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
               L  A  +                          L   +    IR  +      +++D
Sbjct: 1216 PPLLDCADLILLT-----------------------LALLESQPNIRRDLATAYPIVVVD 1252

Query: 184  EVQDTSLIQWEVIRSL----------------------------------TEDFFVGKNT 209
            E QDTSL Q++V+++L                                    +    + T
Sbjct: 1253 EFQDTSLPQFKVVKALALGRQEQEREQARERAWMHETMERERGEGRAGFCAGNPGRQEAT 1312

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                  +  VGD+ QSIY F G + K  L   R    R            L  ++RS A 
Sbjct: 1313 RQRRGGVTVVGDDDQSIYGFRGIDAKNFLIFDRAFPDRLE--------FHLSCNYRSVAP 1364

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
            I++    + +   + +                      V
Sbjct: 1365 IVSASLALINHNRHRRLKRLYPAARPFSSFLSSFLFQAV 1403



 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 58/249 (23%), Gaps = 30/249 (12%)

Query: 527  DVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKG 582
            +     L             +    L   L+                N + + T+H AKG
Sbjct: 2111 EDAWTLLRLAEGYTPNALQPTGWDCLSRFLKDLTNDRCGEAETLQRRNSIFLSTIHQAKG 2170

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PVV L        S        ++               S +        +     +
Sbjct: 2171 LEWPVVILAKANEGASSSASSSSSFVLVPPLSSSSSAAASAVSSASAVSSVSAVSASLTA 2230

Query: 643  TQEEYNR--------------------------LLYVGMTRASDQLIICKHSNTSNEKKS 676
               +  R                          L YV +TRA   L++       + +  
Sbjct: 2231 EAWQKRRAQEERVWAMWTEKKKLEEQELEEERRLCYVALTRAKSMLLVTCSKTEKSGQSL 2290

Query: 677  NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                +         +           S           ++     +  E  ET +    E
Sbjct: 2291 RVSRFVSEAKLFHFHPLSAASGVHPKSEKDPCRCRSAGTSTDARGSREEETETDRDAHAE 2350

Query: 737  QKIPKKLFS 745
            ++  ++  S
Sbjct: 2351 RRKREERNS 2359


>gi|237842345|ref|XP_002370470.1| uvrD/REP helicase domain-containing protein [Toxoplasma gondii ME49]
 gi|211968134|gb|EEB03330.1| uvrD/REP helicase domain-containing protein [Toxoplasma gondii ME49]
 gi|221502602|gb|EEE28322.1| uvrD/REP helicase domain-containing protein, putative [Toxoplasma
            gondii VEG]
          Length = 2851

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 64/213 (30%), Gaps = 47/213 (22%)

Query: 132  YLNAHYEEAKKKN--CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
             L   Y    ++    +LD  D        L   +    IR  +      +++DE QDTS
Sbjct: 1168 ALTRQYAALLRQQTPPLLDCSD---LILLTLALLESQPNIRRDLATAYPIVVVDEFQDTS 1224

Query: 190  LIQWEVIRSL----------------------------------TEDFFVGKNTHSSPRT 215
            L Q++V+++L                                    +    + T      
Sbjct: 1225 LPQFKVVKALALGRQEQEREQARERAWMHETMERERGEGRAGFCAGNPGRQEATRQRRGG 1284

Query: 216  LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
            +  VGD+ QSIY F G + K  L   R    R            L  ++RS A I++   
Sbjct: 1285 VTVVGDDDQSIYGFRGIDAKNFLIFDRAFPDRLE--------FHLSCNYRSVAPIVSASL 1336

Query: 276  KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
             + +   + +                      V
Sbjct: 1337 ALINHNRHRRLKRLYPAARPFSSFLSSFLFQAV 1369



 Score = 46.1 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 60/243 (24%), Gaps = 24/243 (9%)

Query: 527  DVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRAHS--ANHNEVRIMTVHTAKG 582
            +     L             +    L   L+                N + + T+H AKG
Sbjct: 2077 EDAWTLLRLAEGYTPNALQPTGWDCLSRFLKDLTNDRCGEAETLQRRNSIFLSTIHQAKG 2136

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            LE PVV L        S        ++               S       S   +  +K 
Sbjct: 2137 LEWPVVILAKANEGASSSASSSSSFVLVPPLSSSSSAAASAVSSVSAVSASLTAEAWQKR 2196

Query: 643  TQEEYN--------------------RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
              +E                      RL YV +TRA   L++       + +      + 
Sbjct: 2197 RTQEERVWAMWTEKKKLEEQELEEERRLCYVALTRAKSMLLVTCSKTEKSGQSLRVSRFV 2256

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                    +           S           ++     +  E  ET +    E++  ++
Sbjct: 2257 SEAKLFHFHPLSAASGVHPKSEKDPCRCRSAGTSTDARGSREEETETDRDAHAERRKREE 2316

Query: 743  LFS 745
              S
Sbjct: 2317 RNS 2319


>gi|168006903|ref|XP_001756148.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692658|gb|EDQ79014.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 699

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +  HYE        +D+ D I     LL+K      +  +  +    +L+DE QD
Sbjct: 151 AVGASVLRHYEATLAACDAMDYHDFISFAVFLLEKYPE---VLDECQKTWTCVLVDEFQD 207

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
           TS +Q+  +R L                +  VGD+ Q
Sbjct: 208 TSRMQYRFLRLLAS-----------HNRVTIVGDDDQ 233



 Score = 56.5 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 96/367 (26%), Gaps = 35/367 (9%)

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
               I VL R++    +     R  K  + +               IK ++++ R +L  
Sbjct: 266 TFGGIAVLYRRQVTGRMFQSAFRSRKIPFNVH-----GVAFYRKKIIKSVISMLRTVLPG 320

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICT----QRHETETVYEYIQKFANCGISKFQHVIKY 487
             D+ +  +LK+       +    I       +    + ++  Q      +S      + 
Sbjct: 321 NTDIYWRRVLKALYSGDKSECKKIIEYVDKVAKSSNTSFHQAAQTIFTAKVSGTFSRKQL 380

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE----VIDVLDE----FLN----- 534
                 +      H                ++            V+DE     LN     
Sbjct: 381 ALGRRVLTSVNMVHCLAHKERSLSGLVTAVVNLLPQRPVFNSRAVVDEDGGKLLNEDDDP 440

Query: 535 --FTLRNEQNSYSSLQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLV 591
                    +    L    S   Q               E   +++  A           
Sbjct: 441 RTVLEYFLDDVSEFLSNFCSSFSQCDEDDSIVCGQVPQEEGGCLSILKAFLDHLSSREAE 500

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
           +   +   +K+   +  M   ND     +   + +  ++  S           EE  RL 
Sbjct: 501 NFQQRKQDNKNSVTLTTMHQANDTETPLLNEGKGQVADDSCS----------IEEERRLF 550

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YV MTRA  +L IC     S  +         +                 +++ +D    
Sbjct: 551 YVAMTRARKKLYICYVVTDSLRQVRYIEIKMCLYDHCATPSTASGNNATESTVLQDSAGR 610

Query: 712 YEWSTHH 718
            + +  H
Sbjct: 611 VDLNDVH 617


>gi|118617851|ref|YP_906183.1| hypothetical protein MUL_2341 [Mycobacterium ulcerans Agy99]
 gi|118569961|gb|ABL04712.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 293

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 34/218 (15%)

Query: 749 NDINEPYILNPSTIDTKGKTNLESL--------LSDNQTFNRGLIIHKLLQVIFTLPEHK 800
             +     L+PS      +  L              +    RG ++H  L+ ++ LP  +
Sbjct: 9   ASVYIRPALSPSRAADFKQCPLLYRFRAIDRLSEKPSTAQLRGSVVHAALEQLYALPAVQ 68

Query: 801 R-KNFITSYCT-----------KNAKLWPAKEYKNLLLSITRLL------ENPMMTTAMS 842
           R  +   S                A    A +   LL     LL      E+P       
Sbjct: 69  RGPDTARSLVESAWEQVIAGELDLAGELAADQQAQLLEDARALLSGYYRLEDPR---RFD 125

Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI 901
             S  E  V  ++       ++ G ID+I ++    + + +YKT    P       +  +
Sbjct: 126 PQS-CEQRVEVELA---DGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAM 181

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
            Q+  Y   L  S         LIY+++ +V     ++
Sbjct: 182 FQMKFYGVALFRSRGVLPSRLRLIYLADGQVLDYSPDR 219


>gi|218563083|ref|YP_002344862.1| hypothetical protein Cj1482c [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|112360789|emb|CAL35589.1| hypothetical protein Cj1482c [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
          Length = 788

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/532 (12%), Positives = 156/532 (29%), Gaps = 66/532 (12%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              I+   R       I+V+  D     + L + D   +     +    +S    L    
Sbjct: 252 MDEISHFVRKGLKPENIAVITPD-ESFCEFLRLFDKDNML----NFASGISIKESLFYQK 306

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F    +            E  +E  Q   +   +    +     E           ++F 
Sbjct: 307 FQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 366

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L          +     +  +  E   F     +N   +L+ELI  L     +     
Sbjct: 367 KLLALF-----LENEKQELMYLIRKELY-FIKDLLKNQSLTLKELI-HLFFMQISQLSLS 419

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V +M +  ++GL    V LVD   +    + + ++ +   +    G+  +  + 
Sbjct: 420 DVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRE 479

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             +                    R  Y  + + + ++ IC   N    K           
Sbjct: 480 NLQ--------------------RFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDF 519

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +   H  ++     L       +           ++ P E   +  +    +   +  + 
Sbjct: 520 FYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSRFNLLENQKRTYYY 579

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKN 803
               ++ EP +L+                 +++  N+G  IHK+L++             
Sbjct: 580 RYILNLAEPRVLS----------------EESKAKNQGNFIHKMLEIYYKNYANNDFDIK 623

Query: 804 FITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCP 858
              +   K  +       + +   L   +  +N       S      ++E+ ++  +   
Sbjct: 624 VFANLLDKEYQKYNISELDLEVFKLKFMQFAKNE--KEHFSKGFYVVHTELELNNILKLG 681

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              I + G ID+I  S++   I +YK+                 QL+ Y+ +
Sbjct: 682 TDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSY---------QLAFYQAL 724


>gi|260425185|ref|ZP_05779178.1| putative ATP-dependent nuclease subunit B [Dialister invisus DSM
           15470]
 gi|260404426|gb|EEW97973.1| putative ATP-dependent nuclease subunit B [Dialister invisus DSM
           15470]
          Length = 1028

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 83/757 (10%), Positives = 189/757 (24%), Gaps = 142/757 (18%)

Query: 273 VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN------PQQ 326
           + +++F+ P N   L  +        +    +         + + +            + 
Sbjct: 128 LSNEIFARPANLYALLSEKEPHFDSVTLPEMKRFRCPRLRCLAADYFQNVPSPCPLPKET 187

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                    +     +   A  I+  I +++           + ++ +DILVL+R     
Sbjct: 188 SPVPEKGIHIVSAPDSHAEADFISRRILSLVRD---------KNLRWRDILVLLRS---A 235

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI-------LSQEDDLSFVC 439
              T       + Y I V  +++  + +H  +  L  L  FI                  
Sbjct: 236 DTYTDPLERSFSRYGIPVFTDEKQPMNNHPLVMLLDGLLHFIKAESRGKNRGFTREHIFR 295

Query: 440 MLKSPLF------------------NFSEDDIFKICTQRHETETVYE---------YIQK 472
           +LK+ +F                  +       K    R       E           Q 
Sbjct: 296 ILKTEIFPSFPTDMIDKLENYVLKYHIRFSTWQKPWAFRDYRSIDQEPAPLSDKEITKQN 355

Query: 473 FANCGISKFQHVIK-YIHELIHIAQFCSPHDFFTLILGAKKGRQQF-----------ISR 520
            AN    K   ++  ++              F    L  ++  +               R
Sbjct: 356 TANTWREKVLSLLNPFLAGWKEALSAEDKCAFLYRWLTEQQIPETLSVWDELEFEKTKKR 415

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHT 579
              +V   +   L+  +          +EL   L      +  +      + V + ++  
Sbjct: 416 PHLQVWKKVLSLLDEIVHVTGKDILPEEELCGILTDGLSALTFSMIPPTLDHVTVTSMDR 475

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
               E+ VVF+       F  K             D        + +         + + 
Sbjct: 476 GYAAEAKVVFIPGALEGSFPKK------------IDDSGFFTETEKQVLLKSARINLGNN 523

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                +E     Y+ +TRASD L +   +  ++   +      + +    +  E ++ + 
Sbjct: 524 LMELVQEEQFYTYLALTRASDALYLSYPAAAADGSAAEPSFLLERLKALGYYTENMEILP 583

Query: 700 L------------TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF--- 744
                         N                P       ++  +     + +  KL    
Sbjct: 584 PSPYHDDPSFFANPNQALSLLPEILRNGRPSPTGNWAALKDWAEGNEYRELMESKLAGLR 643

Query: 745 ---SPIKNDINEPYIL---------NPSTIDTKGKTN-----------LESLLSDNQTFN 781
              +  +        L         + + +                   E    +    +
Sbjct: 644 YQNTAARLPKMLARKLFMKGGRFYGSVTKLQNYRSCPYQYFLRYGIGIEERNTGEADYLD 703

Query: 782 RGLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSIT--------- 829
            G  +H  +     + +    + +        K ++    K    +              
Sbjct: 704 YGNYLHAGIHQFGEILKSQNRQWRQATDEEIEKISEDITEKITPRIKADALSSDQSAKYT 763

Query: 830 -RLLENPMMTTAMSCDSYS----------EVSVSGKINCPK-KDIIISGRIDQISISQQN 877
            R+L+            +S          E     +I+        ++G+ID++  +   
Sbjct: 764 RRVLDQTFRRALQRFRQWSRQSGFDTLDMEKEFYLRISASPTDSFTLTGKIDRVD-TDGR 822

Query: 878 IFIF-EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                +YKT       +  I      QL  Y   L  
Sbjct: 823 YAAVCDYKTG-SPKLSLNEIMEGLSLQLITYLLALSK 858


>gi|253580236|ref|ZP_04857502.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848329|gb|EES76293.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1124

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 71/686 (10%), Positives = 190/686 (27%), Gaps = 119/686 (17%)

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
              +  +I V+    ++   +         +  I    +++  +  +  ++ L A     +
Sbjct: 333  GYRYGEIAVITGNLEEYARLAAQV---FEEADIPYFIDEKHSVMMNPFVEYLRAAMEMAV 389

Query: 430  SQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------RHETETVYEYIQKFANCGISKFQH 483
                  S    L+  +   + +   K+         R   +   ++++ +   G  K Q 
Sbjct: 390  QGFPYESVFRYLRCGMSEVTREQADKLENYVLALGIRGYKKWSEKWVRVYRGMGAEKIQE 449

Query: 484  VIKYIHELIHIAQFCS----------------PHDFFTL--ILGAKKGRQQFISRFGNEV 525
            + +         +  +                 ++F     +    K +++     G++ 
Sbjct: 450  LNEIREIFAEEVRELAQGFGSGKKTVEEYCRILYEFIQKSDVWQKLKRQERKFKESGDKA 509

Query: 526  ID--------VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMT 576
            ++        ++ + L+  +        + QE    LE      K A      ++V +  
Sbjct: 510  MEKEYNQIYGIVMDLLDKMVEILGEETVNRQEFRQLLESGLSQAKVALIPPSIDQVMVGD 569

Query: 577  VHTAKGLESPVVFLVDTGSQVFS-HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            +  ++  E   +F V               +      +      + +         +   
Sbjct: 570  MERSRLKEIKALFFVGVNEGNIPKSTQTGGILSELDRDFFQEQGVELAPGPKELMNMQRF 629

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQ-------------LIICKHSNTSNEKKSNQRTWY 682
              +L  +   E   L Y   T A  +             L +          + ++ +  
Sbjct: 630  YLYLNMTKPGEKLILSY-SDTNAKGEGISPAYLIGSICSLYLKLEIEGGAGVRPHKNSIN 688

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP----------------LER 726
            +       N E    + L   + + E    +      E                      
Sbjct: 689  NY--CYPENPEAGIDLFLEKLVQETEKEHEDIREQADETDAMFGELYSWYLRNPEYRSRV 746

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS----------- 775
            ++ ++     +       S  K    E    + + ++          L            
Sbjct: 747  QKLVQSAFAGKPEDIISQSVAKALYGEVSPYSATRLERFAACAFAHFLQYGMKLTERVEY 806

Query: 776  DNQTFNRGLIIHKLLQ-----------VIFTLPEHKRKNFITSYCTK------NAKLWPA 818
            + +  + G ++H+ L+               L E +R                N  L  +
Sbjct: 807  EFKPMDMGNVMHEALESFAEEVRKRGMKWTELTEQERNEIADRCLDNIVADYGNTVLKSS 866

Query: 819  KEYKNLLLSITRLLENP--MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI--SIS 874
               + ++    R+L      +   +    +                   GRID++     
Sbjct: 867  ARNEYMIERTRRILRRTVWALQKQLEQGEFQPEGFEVTFGG--------GRIDRVDIMED 918

Query: 875  QQNIFI--FEYKTHHHVPQEIEHIPYTHIAQLSIYEK-ILK---DSYPNKSL--VCLLIY 926
            Q  +++   +YKT  +   ++ ++ +    QL IY    L+     YP+K +    +  Y
Sbjct: 919  QNKVYVKVIDYKTG-NTSFDLVYLYHGLQLQLMIYLDGALRVEQKKYPDKEIIPAGVFYY 977

Query: 927  -VSEPKVFIIPQNKLNKAFAEISTKI 951
             + +P +       +    A +  ++
Sbjct: 978  NIKDPMIQEKIDADVEAVSAGLMKEL 1003


>gi|229166074|ref|ZP_04293836.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH621]
 gi|228617383|gb|EEK74446.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH621]
          Length = 1166

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 78/719 (10%), Positives = 197/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKYHGEASVTISTAANLRAEVEGVAREIRRLVADE---------DYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDARKEAMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDASEMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRVRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EENGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKMSLSMFTEVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V +  +  ++  +    F++     V              L+D+    +     +   
Sbjct: 582 DQVLVANIDHSRLSDIKATFIIGVNEGVIPA----APMDEGMLSDEERNVLTAAGIELAP 637

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 638 TT---------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PDVKESFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 --------------------FSPIKNDINEPYIL-------NPSTIDTKGKTN------- 769
                                   K   +    L       + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT---SYCTKNAKLWPAKEYK 822
                E  +      + G + H  L+ I      + + +       C   + L   +   
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADKLLRENRTWADLSIKECEHLSALVIEEIAP 868

Query: 823 NLLLSIT----------RLLENPMMTT--AMSCDSYS----EVSVSGKINCPKKDII--- 863
            L   I           + L+  +  T   +   + S     V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|57238505|ref|YP_179636.1| hypothetical protein CJE1655 [Campylobacter jejuni RM1221]
 gi|57167309|gb|AAW36088.1| conserved hypothetical protein [Campylobacter jejuni RM1221]
 gi|315058936|gb|ADT73265.1| hypothetical protein CJS3_1562 [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 788

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/532 (12%), Positives = 156/532 (29%), Gaps = 66/532 (12%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              I+   R       I+V+  D     + L + D   +     +    +S    L    
Sbjct: 252 MDEISHFVRKGLKPENIAVITPD-ESFCEFLRLFDKDNML----NFASGISIKESLFYQK 306

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F    +            E  +E  Q   +   +    +     E           ++F 
Sbjct: 307 FQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 366

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L          +     +  +  E   F     +N   +L+ELI  L     +     
Sbjct: 367 KLLALF-----LENEKQELMYLIRKELY-FIKDLLKNQSLTLKELI-HLFFMQISQLSLS 419

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V +M +  ++GL    V LVD   +    + + ++ +   +    G+  +  + 
Sbjct: 420 DVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRE 479

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             +                    R  Y  + + + ++ IC   N    K           
Sbjct: 480 NLQ--------------------RFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDF 519

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +   H  ++     L       +           ++ P E   +  +    +   +  + 
Sbjct: 520 FYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSRFNLLENQKRTYYY 579

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKN 803
               ++ EP +L+                 +++  N+G  IHK+L++             
Sbjct: 580 RYILNLAEPRVLS----------------EESKAKNQGNFIHKMLEIYYKNYANNDFDIK 623

Query: 804 FITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCP 858
              +   K  +       + +   L   +  +N       S      ++E+ ++  +   
Sbjct: 624 VFANLLDKEYQKYNISELDLEVFKLKFIQFAKNE--KEHFSKGFYVVHTELELNNILKLG 681

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              I + G ID+I  S++   I +YK+                 QL+ Y+ +
Sbjct: 682 TDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSY---------QLAFYQAL 724


>gi|270623532|ref|ZP_06221902.1| ATP-dependent DNA helicase rep [Haemophilus influenzae HK1212]
 gi|270317694|gb|EFA29103.1| ATP-dependent DNA helicase rep [Haemophilus influenzae HK1212]
          Length = 68

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 18/86 (20%)

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            ++L+DE QDT+  Q+E+I+ L  D                VGD+ QSIYS+ GA P+ +
Sbjct: 1   RYLLVDEYQDTNTSQYELIKLLVGD----------RICFTVVGDDDQSIYSWRGARPENM 50

Query: 238 LREKRINQKRATNAGQKFSIIELPLS 263
           +R +    +         ++I+L  +
Sbjct: 51  VRLRDDFPR--------LNVIKLEQN 68


>gi|148555592|ref|YP_001263174.1| double-strand break repair protein AddB [Sphingomonas wittichii
           RW1]
 gi|148500782|gb|ABQ69036.1| Double-strand break repair protein AddB [Sphingomonas wittichii
           RW1]
          Length = 991

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/464 (9%), Positives = 122/464 (26%), Gaps = 56/464 (12%)

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           +  I     + +      +  A     + + +++ + +                 +    
Sbjct: 467 LDGIARYLRDGDGHARRARAPAIDWWDEVRPLLEPLEKAFSARTLAELLAALRETISTLA 526

Query: 513 GRQQFISRFGNEVIDVLDEFLNFT-LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
               +    G    D++ E   +  +       + L   +  L        R     H  
Sbjct: 527 DDAGWSGPDGRAAADLVAELEAWAPIGPAAFDPAGLAPTLRLL--MDAVAVRPPQGGHPR 584

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           + I  +  A+   + ++ L      V+         + P +  + G+P    +     + 
Sbjct: 585 LSIWGLLEARLQHADLMVLGGLNEGVWPALPSPDPWLAPRIRAELGLPGLETRIGLSAHD 644

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            +  +   +            + +TRA              + ++        +      
Sbjct: 645 FAMALGAPE------------LIVTRARR------------DARAPTIASRFWLRLEAMT 680

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
               ++ +L N     +  A       PE  P   +     ++   ++ +    P     
Sbjct: 681 GGITREHRLPNWAAAIDRPADRRFIARPEPAPPVADR--PNVIAVTRLDRLQADPFAFYA 738

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---FTLPEHKRKNFITSY 808
           +    L P          L+++ +D     RG  +H + +           +      + 
Sbjct: 739 DAMLRLRP----------LDAVDADPTPAWRGTAVHAVFEAWMKQDDCDPDRLLPRAEAM 788

Query: 809 CTKNA-----KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
               A     +          L  +   +                ++           I 
Sbjct: 789 LRDMAAHPVMQALWEPRLIEALRWVADRMREER------AQGRRPIAAELDGRVEVAGIT 842

Query: 864 ISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           ++G++D+I   +   + I +YKT          +   +  QL +
Sbjct: 843 LTGKVDRIDRLADGTLAIVDYKTGKPP--SAAQVEAGYAMQLGL 884


>gi|15611404|ref|NP_223055.1| hypothetical protein jhp0336 [Helicobacter pylori J99]
 gi|4154868|gb|AAD05920.1| putative [Helicobacter pylori J99]
          Length = 778

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 57/472 (12%), Positives = 137/472 (29%), Gaps = 82/472 (17%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLQTSDCNLSGSAL----LDLENITLALLEQQSSKEKAPLKEAHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   V + D     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKVVIADFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             +     + +  +L     +P  + +   + +    L K+ K+        L Y+    
Sbjct: 430 VPNLKDCDLFLNSALRQSLNLPTLLDKKNLQKHYYYQLFKNSKEVA------LSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++    H +       L  +    E+   E    
Sbjct: 480 ----------------ESETLKASNMLLELDLHTEPIKDAYTLFETSPIKEYQEEEIKAA 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++       +   L       ++ +                          +    D 
Sbjct: 524 IPKDFSF----SASSLNAFLTCKRRFYYHY-------------------IKRFKETPKDE 560

Query: 778 QTFNRGLIIHKLL-QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN---LLLSITRLLE 833
                G +IH+LL +                + ++  +    KE  +    L  I    +
Sbjct: 561 SNSAVGSLIHELLKEAYEKDKNPHALEERLIWLSETRENVTPKERLDTLVALKKIQAFYK 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYK--TH---- 886
                   + +  + + +        + +I  GRID+I  +    I + +YK  +     
Sbjct: 621 KER--ERFNAEI-TILDLEKSFETIIQGVIFKGRIDRIDKTADNEIILLDYKFKSDLKLD 677

Query: 887 --------HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                      P EI  I   +  Q++IY + LK+    + +      + + 
Sbjct: 678 SMSEKQRKGLSPIEIAQISTDY--QMAIYVRALKNLGYKEPIKAFFYDLRKG 727


>gi|254294693|ref|YP_003060716.1| hypothetical protein Hbal_2339 [Hirschia baltica ATCC 49814]
 gi|254043224|gb|ACT60019.1| conserved hypothetical protein [Hirschia baltica ATCC 49814]
          Length = 1026

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/550 (10%), Positives = 141/550 (25%), Gaps = 69/550 (12%)

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD-- 452
            L   + + +  +                + +++  + D +  + +LK PL     D+  
Sbjct: 400 ALMTRWGVDIPPSSGTPFMQTHHGSLFALMFQWLRDEGDPVQLLSLLKHPLVRVGWDEDN 459

Query: 453 ----IFKICTQRHETETVYEYIQKFANCGISKFQHVI---------KYIHELIHIA--QF 497
               + ++ + ++E               +      +         + I +L   A    
Sbjct: 460 YHSALVELESHKNEFREDGTVRGPRRYDTLDALADRLGMQKRAQSAQLIRDLATAARQCE 519

Query: 498 CSPHDFFTLILGAKKGRQ--QFISRF-----------------GNEVIDVLDEFLNFTLR 538
             P      I G    R   +   R                  G +    L+        
Sbjct: 520 IRPSTMAQDIDGNVFARACARLAERLVSTENEAGSTRLWRGVEGAQTARYLETLAEIAAE 579

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                     E    +     +        H  + I     A+     V+ L       +
Sbjct: 580 LGPVPPDLWTEFAEAIA--SESAIPPKGGEHPRLAIWGPLEARQQMRDVIILASLNENSW 637

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                    +   L  D G+P    +     +  + L                 V + R+
Sbjct: 638 PAAAAADSFLPKRLRKDLGLPDPEERLGLSAHDFAQLACAPD------------VKLVRS 685

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH- 717
                        ++K S    W   +           +        + +     W+   
Sbjct: 686 KRV----------DDKPSVASRWLWRLNTLAAGGLGSPEAVQKALEPEPKNNPLIWARSM 735

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                    +    +   + +  K   S +   I +PY +  S +       + ++ +++
Sbjct: 736 RKARDYTPIQAPTPRPPVDARPTKFSVSRVARLIRDPYAVYASDV--LKLNPMPAVGAES 793

Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN--LLLSITRLLENP 835
               RG  IH  ++    L   +  + +T    K  +   A E        +    +   
Sbjct: 794 GPAERGTAIHAAVERY-ELEGGQVIDLVTKELKKAGETDTAIELNRPLWSRAADAYIAWR 852

Query: 836 MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQEIE 894
                   + + E+          +   ++ + D+I  +      I ++KT    P+  +
Sbjct: 853 NERETNIREKHLEIEGELTFEISGRKYRLTAKADRIDLLKDNTFAIIDFKTG--TPKTKK 910

Query: 895 HIPYTHIAQL 904
            +      QL
Sbjct: 911 QLQSGLEPQL 920


>gi|94496378|ref|ZP_01302955.1| helicase [Sphingomonas sp. SKA58]
 gi|94424124|gb|EAT09148.1| helicase [Sphingomonas sp. SKA58]
          Length = 989

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/553 (11%), Positives = 138/553 (24%), Gaps = 77/553 (13%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +          + I    +    L+       L+A+ + +  +   +  + +LK PL 
Sbjct: 375 RQLATRVSAHLRRWGIDADDSAGQPLSRLPPGTLLIAMAQAVAERFAPVPLLTLLKHPLV 434

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK--YIHELIHIAQFCSPH--- 501
              +  I  +   R     +     +    GI              L    +   P    
Sbjct: 435 MRGDARIAWLDGVRGLDLLLRGPRPQAGLHGIDLVLRARDDDRQRTLRDQVRAWWPTARA 494

Query: 502 --DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             +          G    ++             L+       +   +  +L +++E   P
Sbjct: 495 LLEPLETAFATTTGLAGQLAALREAAS-----LLSAEAIWAGHHGHAAADLFADMESAAP 549

Query: 560 TIKRAHSA---------------------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              R   A                      H  + I+ +  A+  ++ V+ L      V+
Sbjct: 550 EGPRQADARALPALLDDMLSGLSVRPPQGGHPRLSILGLIEARLTQADVMILGGLNEGVW 609

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                    + P +  D G+P    +     +  +  +   +            V +TRA
Sbjct: 610 PGLPAPDPWLAPRIRRDLGLPGLETRIGLAAHDFAGALGAPR------------VLITRA 657

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                       S       R W  +   +    +   +            +        
Sbjct: 658 RR---------GSGGPAVASRLWLRLKAMAGPQWKTADRYAAMARAIDAPLVYGPTRRPA 708

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
           P      R   I  + D  ++    F+     I     L+P   D               
Sbjct: 709 PSPPIAVRPHVIP-VTDVDRLKADPFAFYARRILRLARLDPVDADA-------------G 754

Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL----SITRLLEN 834
              RG  +H++LQ           +          +       K L         R +  
Sbjct: 755 PAWRGTAVHEVLQRWAEAGTLDPTDLEVRARAMFDQPEVHPLLKALWQPRLIESIRWIAA 814

Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEI 893
            +       +  + +SV  +       + + G+ D++         I +YKT        
Sbjct: 815 EVARD--KSEGRTIISVEQEGRADVAGVTLMGKADRLDRLADGRIGIIDYKTGKPPSAR- 871

Query: 894 EHIPYTHIAQLSI 906
             +      QL +
Sbjct: 872 -QVKAGFSLQLGL 883


>gi|315927430|gb|EFV06768.1| hypothetical protein CSQ_1123 [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 694

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 69/532 (12%), Positives = 156/532 (29%), Gaps = 66/532 (12%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              I+   R       I+V+  D     + L + D   +     +    +S    L    
Sbjct: 158 MDEISHFVRKGLKPENIAVITPD-ESFCEFLRLFDKDNML----NFASGISIKESLFYQK 212

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F    +            E  +E  Q   +   +    +     E           ++F 
Sbjct: 213 FQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 272

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L          +     +  +  E   F     +N   +L+ELI  L     +     
Sbjct: 273 KLLALF-----LENEKQELMYLIRKELY-FIKDLLKNQSLTLKELI-HLFFMQISQLSLS 325

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V +M +  ++GL    V LVD   +    + + ++ +   +    G+  +  + 
Sbjct: 326 DVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRE 385

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             +                    R  Y  + + + ++ IC   N    K           
Sbjct: 386 NLQ--------------------RFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDF 425

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +   H  ++     L       +           ++ P E   +  +    +   +  + 
Sbjct: 426 FYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSRFNLLENQKRTYYY 485

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKN 803
               ++ EP +L+                 +++  N+G  IHK+L++             
Sbjct: 486 RYILNLAEPRVLS----------------EESKAKNQGNFIHKMLEIYYKNYANNDFDIK 529

Query: 804 FITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCP 858
              +   K  +       + +   L   +  +N       S      ++E+ ++  +   
Sbjct: 530 VFANLLDKEYQKYNISELDLEVFKLKFMQFAKNE--KEHFSKGFYVVHTELELNNILKLG 587

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              I + G ID+I  S++   I +YK+                 QL+ Y+ +
Sbjct: 588 TDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSY---------QLAFYQAL 630


>gi|213400871|gb|ACJ47084.1| hypothetical protein [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 157

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 11/165 (6%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++    +    G+ +   +L  SFRST ++L +VD++F+     +     + 
Sbjct: 1   NPHLFNYMQQYFHTKTG--GRDWVSCQLEKSFRSTPEVLMLVDRIFNN---FREEISFND 55

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             I+H   R    G +++W  +    + +    Q   T   D + ++    +LA+ IA  
Sbjct: 56  NKIKHIPYRENDQGYIEIWPLLPGYEEEEQQALQIHLTQRKDYVVKD---RLLAQAIAQR 112

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           I N +    I    K R I+ +DI++LVR+R    L+ ++   LK
Sbjct: 113 IHNWLNEGRIL-VAKDRHIEPRDIMILVRQRN--ALVDYIISELK 154


>gi|226330640|ref|ZP_03806158.1| hypothetical protein PROPEN_04560 [Proteus penneri ATCC 35198]
 gi|225201435|gb|EEG83789.1| hypothetical protein PROPEN_04560 [Proteus penneri ATCC 35198]
          Length = 263

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +      HIL+DE QD S ++  ++ +L +         +   +LFAVGD+ Q+IY F G
Sbjct: 5   RFISPWKHILVDEFQDISPLRASLLTALKQ--------QNKQTSLFAVGDDWQAIYRFSG 56

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           AE            + A           L  ++R    I  V +              +S
Sbjct: 57  AELLLTTSFHHAFGEGAE--------CALDTTYRFNDTIGNVANTFIQQNPVQLSKPLNS 108

Query: 292 TTTIRHRS 299
                 +S
Sbjct: 109 LVKGNKKS 116



 Score = 41.4 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 24/140 (17%)

Query: 526 IDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
            D L+  LN      E+N    L      L +     K         +  MT H +KG +
Sbjct: 122 DDQLENLLNKMSGYVEENETILLLARYHYL-KPELLKKAKTRWPKLNLEFMTFHASKGQQ 180

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
           +  V ++                         G P    +S     ++  +  +      
Sbjct: 181 ADYVIILGLQEGK------------------DGFPAPARESIIELALLPKVEDYPNA--- 219

Query: 645 EEYNRLLYVGMTRASDQLII 664
            E  RL+YV +TRA  Q+ +
Sbjct: 220 -EERRLMYVALTRAKTQVWL 238


>gi|38233839|ref|NP_939606.1| hypothetical protein DIP1251 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200100|emb|CAE49780.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 288

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 37/217 (17%)

Query: 750 DINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
               P  L+PS  +   +  L                   +G ++H +L+ +   P ++R
Sbjct: 6   PSASPLALSPSRANDYQQCPLLYRFRAIDKLPEPKTVAQVKGTLVHAVLEEMHGWPRNER 65

Query: 802 --KNFITSY----------CTKNAKLWPAKEYKNLLLSITRLL------ENPMMTTAMSC 843
                +              T+   L P ++  + L+    LL      ENP    A++ 
Sbjct: 66  LFPAAVKRLKPHWSLMCSKDTELVSLVPEEDTYDFLVECRSLLRGYFEMENPQGFDALA- 124

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIA 902
               E+ V+  +      + I G ID++  +    I + +YKT                 
Sbjct: 125 ---CEMYVNATLP---NGVPIRGFIDRVDKAPTGEIRVVDYKTGKKPIPRFSQQA---QF 175

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
           Q+  Y  +    Y        L+Y+       +  ++
Sbjct: 176 QMRFYALVYWRIYGRIPDQLRLMYLKVADSMFLTPSR 212


>gi|302670099|ref|YP_003830059.1| ATP-dependent nuclease subunit B AddB [Butyrivibrio proteoclasticus
            B316]
 gi|302394572|gb|ADL33477.1| ATP-dependent nuclease subunit B AddB [Butyrivibrio proteoclasticus
            B316]
          Length = 1179

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 92/905 (10%), Positives = 238/905 (26%), Gaps = 181/905 (20%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            I+ D     + IQ+ VI+ L +          +   +    D  + +Y+    E +  + 
Sbjct: 198  IIFDGFTGFTPIQYRVIKQLLKSA--------TEVIVTVTIDAGEDVYANSYEEQELFML 249

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
             K+   +       + S  E+     S   +       +    +  G    +++ +R   
Sbjct: 250  SKKTI-RDLEKLEYELSQEEMK----SVGTLPDFA--TWRNMRDRSGDIRINSSPVRRLQ 302

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                     +   +  ++       + E +        + S+     R+    I++ + +
Sbjct: 303  DNKALSFLEENLFRYNAKKYEGVPQELEIF--------EASTPEAEVRQTMLKITDAVRS 354

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                          +DI ++     +    + L       + I V  +    L  +  I+
Sbjct: 355  G---------KYAYRDIAIVCGSLDE---YSELIAQTAGRFGIPVYIDQNTSLMLNPFIE 402

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----ETETVYEYIQKFAN 475
             L +     +S          ++S +  FS +D   +           ++ ++       
Sbjct: 403  YLTSAIGIAISGYKYEDVFHYMRSGMTAFSREDTDILDNYVRALGIRGKSQWDDRFARRM 462

Query: 476  ------------CGISKFQHVIKYIHELI-------------HIAQFCSPHDFFTLILGA 510
                            +   +++ +  +                A      D    ++  
Sbjct: 463  PKKFMSGNKKTDDMTERELSIMEKLENMRVTITDELSPLFRVQKATAKEISDAILEVIDR 522

Query: 511  KKGRQQF--------------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
               + +                ++   ++ D +   L            +LQE    L  
Sbjct: 523  NNSKARLDEYRDFFIQKGNLRKAKEFEQIYDKVIALLTQIGELIGTDVLTLQEYRDILSV 582

Query: 557  Y-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                        + + + +  +   +  E  ++F + T                      
Sbjct: 583  GFGDIEVGTIPQDVDRIIVGDMERTRLKEIKILFFLGTVDGAIPSNAGT----------- 631

Query: 616  PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
             GI   + +    +      +    +         LY+ +T+ +D+L +         K 
Sbjct: 632  GGIISDVDRQFLVDLGTGVELAPTPRQQMYIQRLYLYMNLTKPTDKLYLSYAELDGEGKS 691

Query: 676  SNQRTWYDMVYDSFHNDERVKK---------------------------IKLTNSINKDE 708
                     +   F      +                            I + +   K  
Sbjct: 692  RRPAYLVPKLKQMFPELIVQRPEDGSFDSQNAAYMDSLMNAAELIRKYAIDVISDEEKSS 751

Query: 709  WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
              A        ENT    E+         +          +        + S ++T    
Sbjct: 752  LYALLKVLGENENTKSTLEKIEAAAFRHYENKPLAKMLALSLYGASLENSVSRLETFASC 811

Query: 769  ----------NLESLLS-DNQTFNRGLIIHKLLQVI---------------FTLPEHKRK 802
                       LE     D  T + G + H++L+                     E    
Sbjct: 812  CYAHFIKYGLQLEERQEYDFDTSDLGNVFHEVLEKYTSEIMTRKIDWRELSDEESEQILG 871

Query: 803  NFITSYCTKNAKLW--PAKEYKNLLLSITRLLENPM--MTTAMSCDSYSEVSVSGKINCP 858
              +T    +            ++++  I R+L   +  +   +S   ++   +       
Sbjct: 872  RALTECVDRYGDTILRSTSRNQHMIDRIHRILTRTVGILKYQISKGVFNPAFLEMDFREA 931

Query: 859  K------------------KDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHI 896
                               + + + GRID++       +I+  + ++K+       +  +
Sbjct: 932  GNLDEINITLSEDEKTRIIEKMRLRGRIDRVDLCEDDDHIYVKVMDFKSGKKKF-NLAFL 990

Query: 897  PYTHIAQLSIY---EKILK-DSYPNKSLV-CLLIY------VSEPKVFIIPQNKLNKAFA 945
             +    QL +Y      ++      K +V   L+Y      +++ K  + P++       
Sbjct: 991  YHGLQLQLVMYMNVAAAVEKKISGGKEVVPAALLYYHVDDPMADGKGDMQPEDINEAIKK 1050

Query: 946  EISTK 950
            E+ T 
Sbjct: 1051 ELRTT 1055


>gi|229108698|ref|ZP_04238308.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-15]
 gi|228674728|gb|EEL29962.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-15]
          Length = 1166

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 197/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++        +   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFNGEASVMISTAANLRAEVEGVAREIRKLVANE---------KYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 582 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 639

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 640 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|256751133|ref|ZP_05492015.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus
            CCSD1]
 gi|256750039|gb|EEU63061.1| ATP-dependent nuclease subunit B [Thermoanaerobacter ethanolicus
            CCSD1]
          Length = 1149

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 93/793 (11%), Positives = 222/793 (27%), Gaps = 157/793 (19%)

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
               +     D    +  R  +  ++  ++             + +  S     +   +  
Sbjct: 260  NNISYEKPVDLNEGVPKRFEKNEEMAFLEKHLFSYPYKIYSKDTKNISLFKAVNVYSEVE 319

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                     A  I  ++  +          ++  DI+V  R   D      L + + + Y
Sbjct: 320  ET-------AREIIRLVRDE---------NLRYSDIVVTAR---DLKRYHKLIKTIFSHY 360

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ- 459
             I    + +  + ++  I  + +L    L      S    LK+   N  ++DI  +    
Sbjct: 361  GIPHFIDLKLDIKNNPIIVYITSLFEIYLKNWSYESVFRHLKTGFTNLDKEDISFLENYV 420

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK------- 512
                    ++ +++     ++   +     E   + +  +  +  +  L           
Sbjct: 421  LANGIKGGKWKEEWKYSFRNRLDKLFDDQDEKEALEKVNTIKNGISEPLNKFYKDFSNAN 480

Query: 513  --------GRQQFISRFGNEVIDVL-DEF-----LNFTLRNEQNSYSSLQELISELEQYP 558
                         + R   + I+ L  EF          +  Q     +  L   +E   
Sbjct: 481  TVREACEILYNFLVERDIPQRIENLIREFKENKEFEIANQYSQIWDIVVDVLDQMVEVMG 540

Query: 559  PTIKRAH------------------SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                                         +EV + +V   K   +  +F++     +F  
Sbjct: 541  EEKINIDLFSKILDIGFEAYQIGSIPPALDEVLVTSVDRMKSHNAKALFVIGANDGIFPA 600

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               ++  +                 +         +    K+   E   L+Y  +T  S 
Sbjct: 601  SSFEEGILTDED-------------RQILTSYEVELDRDTKAKVFEEQFLVYTALTSTSK 647

Query: 661  QLIICKHSNTSNEKKSNQR-------------TWYDMVYDSFHNDERVKKIKLTNSINKD 707
             L I         +                  T +  V +   ++E + ++   +    +
Sbjct: 648  FLRISYPIADHEGRSLRPSIIISRFKRIFPQITQFSNVIEMDTDEENLHRVSSPDPTFNE 707

Query: 708  EWIAYEWSTHHPENTPLE---------REETIKQLMDEQKIPKKLFSPIKNDINEPYIL- 757
               +++      +   L          +E   K++    +              +   L 
Sbjct: 708  MIKSFKEWDIKDKINSLWLDVYNWYSNKEVWRKRIEKVLEGFNYSNQVRVIPSAKIKRLY 767

Query: 758  ------NPSTIDTKGKTNLESLLS-DNQTFNR----------GLIIHKLL-QVIFTLPEH 799
                  + S ++          +    +   R          G+ +H +L +V   L + 
Sbjct: 768  KDEINFSVSRLEKYAACPFAYFVQYGLKAKERKIYSFDPPDLGIFMHNVLNEVSKALEKE 827

Query: 800  K--RKNFITSYCTK--------------NAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
                ++    YC +                 L  +  Y+ L   +TR+L N +    +S 
Sbjct: 828  DKTWEDLDREYCDEVVNIVVDNMLKGVSEHILKSSPRYEYLSKRLTRVLSNAV--WVISE 885

Query: 844  DSYS--------EVSV--------SGKINCPKKDIIISGRIDQI--SISQQN--IFIFEY 883
                        EV+            I    ++I + GRID++      +   I I +Y
Sbjct: 886  HIKRSSFIPSGHEVAFGENQMYPPIKIILSNGEEINLIGRIDRVDVFEKGEESYIRIIDY 945

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV---CLLIYVS-EPKVFIIPQNK 939
            K+  +   ++E + Y    QL IY   + +S   ++       + Y   +  +    ++ 
Sbjct: 946  KSG-NKELKLEDVFYGLELQLLIYLDAILESADKENTDIKPAGIFYFRIDDPIVKADKDI 1004

Query: 940  LNKAFA-EISTKI 951
             ++    EI  K+
Sbjct: 1005 TDEELQKEILKKL 1017


>gi|320324250|gb|EFW80329.1| UvrD/REP helicase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 846

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 77/259 (29%), Gaps = 20/259 (7%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L   ++     +      +      +  +  +    I +        L+    +  +   
Sbjct: 432 LDDYAEAATTLDVLQGYVTRCPKLDYQVEGELGEAPIMQAFHSAASFLENLGLDVTEAVG 491

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLLKKRDVS--AW 168
                +     L    L       + +    +   +L F        ++  +R  +    
Sbjct: 492 HMAFPRGSSDALFFHAL-GIFWPAFNDYLASHSPPILTFN----KMFEMFGERGAANLEQ 546

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV-----GKNTHSSPRTLFAVGDEK 223
           +   +   + H+L+DE QD        +R++  +          +T   P +L AVGD+ 
Sbjct: 547 LPDDVFMPMLHLLVDEFQDCGANTISWLRAVFREARHRGLNVTTSTAVYPTSLMAVGDDW 606

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           QSIY + G+ PK     +              + + +  ++RS   ++   + +      
Sbjct: 607 QSIYGWRGSSPKFFTDFEGYFP------SPSTTRVLMKENYRSQQMVIDAAESLVRSISK 660

Query: 284 AQGLSEDSTTTIRHRSSRI 302
                  +        +  
Sbjct: 661 DDDKHGIAAHPKVKDLAYP 679



 Score = 38.4 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 22/140 (15%)

Query: 528 VLDEFLNFTLRNEQN----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            L E +      E         +  +     +  P   K         ++++T H +KGL
Sbjct: 689 HLAELVEQHFDQEHTVLVLYRKNATKREVREKLRPVLDKARRMKRAGSIKLLTYHGSKGL 748

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E+  VFLV   +Q+ +  +    +    L        +                    + 
Sbjct: 749 EADAVFLVGDCAQLSTSPYRNMAYEQAQLGRAGDPAPY------------------DTAQ 790

Query: 644 QEEYNRLLYVGMTRASDQLI 663
            EE  RL YV +TRA     
Sbjct: 791 GEETLRLAYVAITRAKRHCY 810


>gi|309813116|ref|ZP_07706840.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
 gi|308432920|gb|EFP56828.1| conserved hypothetical protein [Dermacoccus sp. Ellin185]
          Length = 281

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 29/217 (13%)

Query: 754 PYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
           P  L+PS      +  L            S +   +RG ++H +L+ IF +   KR   +
Sbjct: 2   PASLSPSRASDFMQCPLLYRFRVIDKLPESPSAAASRGTLVHSVLERIFDVDAPKR--TL 59

Query: 806 TSYCTKNAKLW-----PAKEYKNLLLS----ITRLLENPM--MTTAMS---CDSYSEVSV 851
                     W        E   L  S    +   L +    +    +            
Sbjct: 60  ERALDLVPHAWEDMLTDEPELAELAGSTPHDLATWLRDAEKLVEKWFAMENPQFLEPAER 119

Query: 852 SGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              +      + + G ID++ ++    I + +YKT     +  E+     + Q+  Y  +
Sbjct: 120 ELYVEADLDGLTLRGYIDRLDVAPGGQIRVVDYKTGRAPSELFENKA---LFQMKFYALV 176

Query: 911 LKDSYPNKSLVCLLIYVSEPKVFII-PQNKLNKAFAE 946
           +  +     L+  L+Y+   +     P      A   
Sbjct: 177 IWRTRGVMPLMLQLVYLGNSQFLRYQPDEADLLALER 213


>gi|168206215|ref|ZP_02632220.1| ATP-dependent nuclease, subunit B [Clostridium perfringens E str.
            JGS1987]
 gi|170662334|gb|EDT15017.1| ATP-dependent nuclease, subunit B [Clostridium perfringens E str.
            JGS1987]
          Length = 1158

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 83/708 (11%), Positives = 189/708 (26%), Gaps = 152/708 (21%)

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A  I  ++           +  + KDI V+ R   D      +   +  +Y+I    
Sbjct: 319  EFVAKDILRLVRE---------KQYRFKDISVICR---DVDNYEKVVSAIFAEYEIPYYI 366

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF-------------------- 446
            + +  +  +  I  + +    I       S    LK+ L                     
Sbjct: 367  DKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGVEGAELIDELENYVL 426

Query: 447  --NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS----- 499
                      +       +    E I +     + +   + + I   +            
Sbjct: 427  AYGIKGKKWMEEWVNYSSSILKEEEISEENKQRLERLNDIRETIVTPLDEFNKQCKGKKT 486

Query: 500  -------PHDFFTLILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQ 541
                    ++F    L       +++  F             EV D+  + L   +    
Sbjct: 487  LNEFATILYEFLDSKLDIMDTIDKYVDYFKENDMAIEAKEYSEVRDIFIDVLEQAVDVLG 546

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            N    L E +  L       +        ++V I  +   K   +  ++++     V   
Sbjct: 547  NEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVNDGVLPS 606

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               ++  +  +  +          S +R  I              E   L+Y   T A +
Sbjct: 607  ASKEEGILSDNDREILLEKGISLASDTRTKIF-------------EEQFLVYTAFTIAEE 653

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L++         K          +     N +   +     +   D+  A   + +   
Sbjct: 654  YLVVTYPLADFEGKSQRPSIIVHRLKKIIPNVKEESEGFKLVNDKYDKISAKIPTLNELM 713

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------------------ 756
                +  +  +     + +        K      Y+                        
Sbjct: 714  IAIRKNYDGAEIEDYWKYVYDWYLREPKWKERIEYVKKGLEYTNLENNISKEKAKKLYED 773

Query: 757  ------LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ-------- 791
                  L+ S ++   +              +  + +    + G  +H++L         
Sbjct: 774  NKNKISLSVSRLERYAQCPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFTNEIKE 833

Query: 792  ---VIFTLPEHKRKNFITSYCTKNAK------LWPAKEYKNLLLSITRLLE------NPM 836
                   L +   +N I S      K      L  +K Y        R+L       +  
Sbjct: 834  KDLKWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQ 893

Query: 837  MTTAMSCDSYSEVSV-------SGKINCP-KKDIIISGRIDQIS---ISQQNIF-IFEYK 884
            M  +      +E++        S K++ P  +   ++GRID++    +  +    I +YK
Sbjct: 894  MKRSDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYK 953

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
            T      ++         QL +Y   L    ++   N+++   ++Y  
Sbjct: 954  TGSKKF-DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFR 1000


>gi|218232937|ref|YP_002365925.1| ATP-dependent nuclease, subunit B [Bacillus cereus B4264]
 gi|251764581|sp|B7HGP8|ADDB_BACC4 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|218160894|gb|ACK60886.1| ATP-dependent nuclease, subunit B [Bacillus cereus B4264]
          Length = 1171

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 73/719 (10%), Positives = 199/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADE---------KYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+   V  ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKV-LDLTEVYYGLALQMLTY 991


>gi|228919961|ref|ZP_04083315.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228964185|ref|ZP_04125308.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795535|gb|EEM43019.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228839674|gb|EEM84961.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 1171

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 199/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNDEASVTISTAANLRAEVEGVAREIRKLVADE---------KYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +    +   SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGDEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|289435608|ref|YP_003465480.1| hypothetical protein lse_2247 [Listeria seeligeri serovar 1/2b str.
            SLCC3954]
 gi|289171852|emb|CBH28398.1| addB [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 1157

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 86/745 (11%), Positives = 195/745 (26%), Gaps = 167/745 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       IA  I  +               + KDI +L R   D  ++        
Sbjct: 307  QANNKRAEIEGIAREIRELTSNG----------YRYKDIAILTRNLGDYDVLCETVME-- 354

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
             DY I +  + +  +  H  I+ + +    I            +K+  F    D      
Sbjct: 355  -DYNIPIFIDKKRAMAKHPFIEFIRSSLDAIQFNWKYEPIFQAVKTEFF---FDSAENAA 410

Query: 458  TQRHETETVYEYIQKFANCGISKFQH----VIKYIHELIHIAQFCSPHDF---------- 503
              R +++ +  Y+ +       K++     + + I  L       +  +           
Sbjct: 411  DMRRKSDILENYVLENGIQNKWKWEKEGDWIYRKIRGLSINVLPQTDEELNIQNMINEMK 470

Query: 504  --------------------FTLILGAKKGRQQFISRFGNEVIDVLDE---FLNFTLRNE 540
                                  L L      +Q  +    E      E   +L     +E
Sbjct: 471  NRIVTPLSTLEINLAKAKTGIELALALYHYLEQVQAAEHLEAWRRTAEENGYLELAREHE 530

Query: 541  QNSYSSLQELISELEQYPPT------------------IKRAHSANHNEVRIMTVHTAKG 582
            Q   S    L   +E                              + ++V +  +  AK 
Sbjct: 531  QAWTSITALLDEFVEVLGEESLELSSFMEIIITGLDALEFSLLPPSLDQVILSDMENAKL 590

Query: 583  LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            L+  V+F +     V   +   K  +     +                  +  +K   K+
Sbjct: 591  LDMKVIFAIGMNDGVMPLRQKDKGILSDQDRESLR-------------EQNSSLKPSAKN 637

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
               E + L Y  ++  SD+L +         K  ++  +   +   F N      +   +
Sbjct: 638  NIGEEDLLAYKIVSLPSDKLFLSYPVADEEGKVLSESNYLRKIKGQFKNLNEEIYLTDPS 697

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY------- 755
             ++ +E   Y  S          + +  K+      +    ++   +D  E         
Sbjct: 698  LLSDEEQSRYIRSKRAALGLLTSQLQMYKRGYPLSNVWWDAYNSYFDDKKESKNAKQVLS 757

Query: 756  ------------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTF 780
                                      + S ++                  E      Q  
Sbjct: 758  SLYYENKTEALQEATAKGLFGEDIHASVSRMEKFFSCEFQHFAQYGLKLEERAHFQLQAV 817

Query: 781  NRGLIIHKLLQVIFTLPE--------------HKRKNFITSYCT---KNAKLWPAKEYKN 823
            + G I H  ++ I    +               +       +     ++  L  +K  + 
Sbjct: 818  DMGEIFHAAMEWISEELKRNNLDWGNLTVEECKELAKLAMKFLAPKIQHEILLSSKRMEY 877

Query: 824  LLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRID 869
            +   + +++     ++       ++  V +                     ++++ GRID
Sbjct: 878  IQYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSNRELLLQGRID 937

Query: 870  Q--ISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVC 922
            +  ++       + I +YK+  H    +  + Y    Q+  Y  I+         KS   
Sbjct: 938  RIDVAEEDNRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKSAEP 996

Query: 923  L--LIYVSEPKVFIIPQNKLNKAFA 945
               L +    +     +    +  A
Sbjct: 997  AGVLYFHMHNQFVQAEKELTEEELA 1021


>gi|229056866|ref|ZP_04196262.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH603]
 gi|228720394|gb|EEL71967.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH603]
          Length = 1171

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 77/757 (10%), Positives = 203/757 (26%), Gaps = 164/757 (21%)

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +   E   T       R      V L      +   +  P ++       ++   ++ 
Sbjct: 267 AREEKIEIEKTIPLMEQPRFHSPALVHL------ETHYEARPNEKYHGEASVTISTAANL 320

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +A  I  ++  +           + +DI VL+R          + R L  DY I
Sbjct: 321 RAEVEGVAREIRRLVADE---------DYRYRDIAVLLRN---GESYYDVMRTLFTDYNI 368

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF----------SEDD 452
               +++  ++ H  ++ + +    I       +    +K+ L               D+
Sbjct: 369 PHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKEAMREEMDE 428

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKF-----------QHVIKYIHELIH-------- 493
               C         +     +                   + + + I+ L          
Sbjct: 429 FENYCLAYGVQGKRWTSEDPWMYRRYRSLDDASEMITDSEREMEEKINRLRDVVRTPVIR 488

Query: 494 -----------IAQFCSPHDFFTLI-----LGAKKGRQQ-----FISRFGNEVIDVLDEF 532
                      +    + + F   +     L   +   +       +    +V + +   
Sbjct: 489 MQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRVHAEENGDFLFATDHEQVWEEVMNL 548

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
           L+  +        SL      +      ++ A+     ++V +  +  ++  +    F++
Sbjct: 549 LDTFVEMLGEEKMSLSMFTEVMSTGLEALQFANIPPSLDQVLVANIDHSRLSDIKATFII 608

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                V              L+D+    +     +              + T  E   ++
Sbjct: 609 GVNEGVIPA----APMDEGMLSDEERNVLTAAGIELAPTT---------RQTLLEEQFVM 655

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           Y  +TRAS++L I         K     ++   +   F + +        N +++ E I+
Sbjct: 656 YQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKESFITNDVNDLSRSEQIS 715

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKL--------------------------FS 745
           Y  +     +  +++ +T K+   E  +                                
Sbjct: 716 YVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNR 775

Query: 746 PIKNDINEPYIL-------NPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIH 787
             K   +    L       + S ++   +              E  +      + G + H
Sbjct: 776 AQKLSTDVSRDLYGDTIKGSVSRMELFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFH 835

Query: 788 KLLQVIFTLPEHKRKNFIT-----------------SYCTKNAKLWPAKEYKNLLLSITR 830
             L+ I      + + +                   +   +   L  +  +  L   + +
Sbjct: 836 AALKRIADKLLRENRTWADLSIKECEHLSTLVIEEIAPLLQRQILLSSNRHFYLKQKLQQ 895

Query: 831 LL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--------------ISGRIDQISIS 874
           ++   + ++        +  V +           +              + GRID++  +
Sbjct: 896 IIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFALANGVKMEVVGRIDRVDKA 955

Query: 875 QQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           +      + I +YK+      ++  + Y    Q+  Y
Sbjct: 956 EDESGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|229126549|ref|ZP_04255563.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-Cer4]
 gi|228656938|gb|EEL12762.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-Cer4]
          Length = 1171

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 73/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADE---------KYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V              L+D+    +     +   
Sbjct: 587 DQVLIANIDHSRLSDVRATFIIGVNEGVIP----VAPMDEGMLSDEEREVLGAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|300786788|ref|YP_003767079.1| RecB family exonuclease [Amycolatopsis mediterranei U32]
 gi|299796302|gb|ADJ46677.1| putative RecB family exonuclease [Amycolatopsis mediterranei U32]
          Length = 299

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 30/234 (12%)

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGL 784
              +        S +  ++     L+PS      +  L               +   RG 
Sbjct: 2   PDADTVTTDTPASAVATEVRRRPALSPSRASDFKQCPLLYRFRAVDRLPEVPTKAQLRGT 61

Query: 785 IIHKLLQVIFTLPEHKRKNFITSYCTKNA---------------KLWPAKEYKNLLLSIT 829
           ++H +L+ +F LP  +R           A                     ++ + L S  
Sbjct: 62  LVHSVLERLFALPAAERVPAQARELLGPAWTDLSADRPEWTELFDGEKPDDHADWLRSAE 121

Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQ-QNIFIFEYKTHH 887
           +LL+                +    +       +++ G ID++ ++    I + +YKT  
Sbjct: 122 KLLD--AYFELEDPRRLEPEACELHVEIELGSGVLLRGYIDRLDVAPTGEIRVVDYKTGA 179

Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
              +  E      + Q+  Y  +L            L+Y+++ +      ++  
Sbjct: 180 APREIGEAKA---MFQMKFYAVVLWRLRGIVPRQLKLMYLTDGQSLAYTPDEAE 230


>gi|229189330|ref|ZP_04316350.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10876]
 gi|228594124|gb|EEK51923.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10876]
          Length = 1171

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 199/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANE---------KYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDSWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N + +      N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKDLFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|251764597|sp|B7GM52|ADDB_ANOFW RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
          Length = 1154

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 76/761 (9%), Positives = 216/761 (28%), Gaps = 157/761 (20%)

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +   +  +      ++     +    R       +    + + +D +   + E  T    
Sbjct: 252 NTWRTYAQLRDIALQNGVPIEKVEQLRHNVRHKHEELRHLEAHYDDRPVCKWEKQTEAI- 310

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            + + ++       IA  I  ++  +           + +DI +L+R   D   +    +
Sbjct: 311 IIGEATTRRAEIEGIAREIIRLVRDE---------GYRYRDIALLIRNVGDYRNV---LK 358

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            +  DY+I    +++  + DH  I+ L A    + +     +    +K+  F   +  + 
Sbjct: 359 TVFADYRIPYFIDEKEPMLDHPFIEWLRASMEAVRTNFRYEAVFRAVKTDFFFHLDQPVH 418

Query: 455 KICTQRHETETVYEYIQKFANCGISKF-------------------QHVIKYIHELIHI- 494
            +     + E          +     +                   +   + ++E   + 
Sbjct: 419 DMRMAMDQLENYVLAFGIQGDKWTEHWTYRKYKGLEGVHAPQTDEEKRYEQQLNEWRKLV 478

Query: 495 ---------------------------AQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVI 526
                                      A+          +    + R    ++R   +V 
Sbjct: 479 ISPLLVLQKRLKQAKTGREQCEALYAYAEHLQIPQKLERLRDEAEERGDLSVARHHEQVW 538

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLES 585
               + L+  +    +   SL+  ++ +E    +++ +      ++V I     ++    
Sbjct: 539 QAFIDLLDQYVEILGDETLSLETFLTIIETGFESLQFSLVPPATDQVLIAHFDRSRLSNI 598

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
              FLV     V   +                  +     +   +    +    ++   +
Sbjct: 599 RCTFLVGVNEGVIPMRKN------------DDGMLSETDRELLYHYSLHVAPASRERMLD 646

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E   LLY+ +  +S++L +    +   EK      +   + D F N  +++       + 
Sbjct: 647 EPF-LLYLALVSSSERLYVTYALSNEQEKTLLPSMFIKRLTDMFPNVTKMQWGTDPFLLP 705

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-------- 757
             + +AY  +        +++ E  K+    + +   +++           +        
Sbjct: 706 LQQQLAYVTNDVATLGPLVQQLEAWKRQYAIEPMWWDVYNAYVQHEQWKERIAVVVRALF 765

Query: 758 -----------------------NPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
                                  + S ++T  +              E  +   +  + G
Sbjct: 766 YENRAKRLNKQLAKELYGKKVKASISRMETFNRCPFAHFAAHGLKLKERTVFQLKAPDMG 825

Query: 784 LIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT- 839
            + H+ L+VI      +           C + +     +    +   +   L        
Sbjct: 826 QLFHQALKVIADRLRQEQLPWSQLSKQQCEQLSYEAVEQIAPYIQQEVL--LSTHRYRYM 883

Query: 840 -------------AMSCDSYSE--VSVSGKINCPKK------------DIIIS--GRIDQ 870
                         +S  +     V +  ++                   ++   GRID+
Sbjct: 884 KKKLQTIMTKATTVLSEHAKRSGFVPIGVELGFGDGEPLPPLTFTLSDGTVLQFVGRIDR 943

Query: 871 I--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           +  ++S+Q +   + +YK+      ++  + Y    Q+  Y
Sbjct: 944 VDQAMSEQGVLLRVIDYKS-KQKTLDLTEVYYGLALQMLAY 983


>gi|229078428|ref|ZP_04210989.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock4-2]
 gi|228704850|gb|EEL57275.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock4-2]
          Length = 1166

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANE---------KYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 582 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 639

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 640 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|229068795|ref|ZP_04202091.1| ATP-dependent nuclease, subunit B [Bacillus cereus F65185]
 gi|228714303|gb|EEL66182.1| ATP-dependent nuclease, subunit B [Bacillus cereus F65185]
          Length = 1166

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANE---------KYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 582 DQVLIANIDHSRLSDVKATFVIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 639

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 640 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|229114674|ref|ZP_04244088.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-3]
 gi|228668739|gb|EEL24167.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock1-3]
          Length = 1166

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 74/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++ +     ++   ++       +A  I  ++  +T          + +DI VL+
Sbjct: 294 EARPNEKYYDEASVTISTAANLRAEVEGVAREIRRLVADET---------YRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLNVRKEMMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 IEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V +  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 582 DQVLVANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 639

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 640 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 --------------------FSPIKNDINEPYIL-------NPSTIDTKGKTN------- 769
                                   K        L       + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVIGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|207723137|ref|YP_002253536.1| homologous recombinational repair protein (partial sequence c
           terminus) [Ralstonia solanacearum MolK2]
 gi|206588330|emb|CAQ35293.1| probable homologous recombinational repair protein (partial
           sequence c terminus) [Ralstonia solanacearum MolK2]
          Length = 755

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/549 (10%), Positives = 140/549 (25%), Gaps = 84/549 (15%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
               ++    R L     + V     + L+   A   LM     +    D  + + +LKS
Sbjct: 128 AQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWLDVVQGDGDTAALLDLLKS 187

Query: 444 PLF-----------NFSEDDIFKICTQRHETETVYEYIQKFANCGIS----------KFQ 482
           P                  ++ +   +R+ +       +  A  G               
Sbjct: 188 PFCLREADAPSSVAPAWVAELERRVRRRNVSGGWGRLRRLAAQRGTDTDAADVTDAGPLA 247

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR---- 538
             +  + +   + +          +        +   R G +  D   + L++  R    
Sbjct: 248 ERLGLLADEAALWRRAGHATLEAWVTLLAGTLDRLRMRTGLQNDDAGRQLLDWLDRLRVS 307

Query: 539 ----NEQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                +  +  SLQE  + L                   V I+ ++ A+      V +V 
Sbjct: 308 VHGSADAGARFSLQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVVVVG 367

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                      + +     +  + G+P                    +     E      
Sbjct: 368 CDDAQLPSAQPEWLFFSNDVRRELGLPD------------RAQRFAQQARDLAEVLL--- 412

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
                   ++++    +    + +    W + +              +          A 
Sbjct: 413 -----NQPEVVLTWQRHGGRGEPNRLSGWLERLQRRLAVAGMRIDAPVVL-------PAL 460

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
           + ++   +         +   +           P +  +     L            L  
Sbjct: 461 QTASRPTDMPAPAAPALVPATLSAAAYNSLRRCPYQFFVGRMLRL----------GELGE 510

Query: 773 LLSDNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPAKE--YKN 823
           +  + +  + G ++H +L                 R   + S   +      A++     
Sbjct: 511 VSDELEKRDVGELLHAILHRFHRQLLDTPMADPADRLALLQSLTDERFGSLLAEDGHALR 570

Query: 824 LLLSITRLLEN-PMMTTAMSCDSYS----EVSVSGKINCPKKDII-ISGRIDQISISQQ- 876
                  ++ +      A   + +     EV V   I  P    + + GRID+I    + 
Sbjct: 571 FYRRWQDVMPSYLDWQAAREAEGWRFEAGEVDVDTSIALPGGQALRLRGRIDRIDTHPEH 630

Query: 877 NIFIFEYKT 885
            + + +YKT
Sbjct: 631 GVAVLDYKT 639


>gi|118476725|ref|YP_893876.1| DNA helicase/exodeoxyribonuclease V, subunit B [Bacillus
            thuringiensis str. Al Hakam]
 gi|251764578|sp|A0RAX6|ADDB_BACAH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|118415950|gb|ABK84369.1| DNA helicase/exodeoxyribonuclease V, subunit B [Bacillus
            thuringiensis str. Al Hakam]
          Length = 1171

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 75/765 (9%), Positives = 208/765 (27%), Gaps = 167/765 (21%)

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299  EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350  RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441  LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
            +K+ L               D+    C         +     +                 
Sbjct: 407  VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482  --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
              + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467  SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516  Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
            +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527  EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587  DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                       + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643  TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
             N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694  PNVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744  ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                        +  ++   +    + S ++   +         
Sbjct: 754  VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770  ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                 E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814  GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 873

Query: 809  CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
              +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874  LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864  -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       + GRID++  ++      + I +YK+      ++  + Y    Q+  Y 
Sbjct: 934  EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-SKSLDLTEVYYGLALQMLTYL 992

Query: 909  KIL---KDSYPNKSLVCL-----LIYVSEPKVFIIPQNKLNKAFA 945
             ++     ++  K          L +     +  +  +       
Sbjct: 993  DVVTSNAQTW-MKKGHAASPAGVLYFHIHNPIVEVKGDASEAEIE 1036


>gi|228951605|ref|ZP_04113709.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808066|gb|EEM54581.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 1166

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEE---------NYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 582 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 639

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 640 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|295698785|ref|YP_003603439.1| p12-1p [Pyrococcus sp. 12/1]
 gi|295126580|gb|ADF80208.1| p12-1p [Pyrococcus sp. 12/1]
          Length = 569

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 85/287 (29%), Gaps = 41/287 (14%)

Query: 4   RFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIE 63
           R G+ ++E            P   +        +         +   + + +    +  E
Sbjct: 80  RLGMDMDEDR---------RPKAPLRYFRTIHGICQALLYDFDVWNPE-ISRRMGGKSPE 129

Query: 64  ERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF-IKIRDRFNTYKMFKS 122
             F L ++       + + +     +           +        +           K 
Sbjct: 130 RWFQLFANQRRRIDPSFRFDPEAMGMANPFEKANVLWQTVSQVVNKEYHKVGREGITQKI 189

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             A           +E  K++  ++D+ D++++  D LK   +              +++
Sbjct: 190 LEALPPALHEHYFAWEAFKEEKGIVDYNDMLMDGYDYLKSGVIHLPT--------KVLIV 241

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD S +Q+E+ + L +D             +   GD+ Q+I+++ GA+P    R   
Sbjct: 242 DEFQDLSPLQFEIFKLLAKD----------KELVVIAGDDWQTIFTWMGADP----RFLI 287

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
                          I L  ++R    IL                 +
Sbjct: 288 KYPADLE--------IVLRKTYRLPEKILREALSYAKANLRRSVFKD 326


>gi|315304459|ref|ZP_07874742.1| ATP-dependent nuclease subunit B [Listeria ivanovii FSL F6-596]
 gi|313627173|gb|EFR96023.1| ATP-dependent nuclease subunit B [Listeria ivanovii FSL F6-596]
          Length = 1157

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 75/731 (10%), Positives = 182/731 (24%), Gaps = 139/731 (19%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       IA  I  +      + +         D  VL     +   I       +
Sbjct: 307  QANNRRAEIEGIAREIRKLTLNGYSYKDIAILTRNLGDYDVLAETVMEAYDIPIFIDKKR 366

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRF------------------------------ 427
               K   V   R  L           + +                               
Sbjct: 367  EMAKHPFVEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDIMEEAADMRRKSDILENYVLEN 426

Query: 428  -ILSQEDDLSFVCMLKSPLFNFSEDDI---------FKICTQRHETETVYEYIQKFANCG 477
             I ++         +   +   S + +           +  +      +     +     
Sbjct: 427  GIQNKWKWQKEGDWIYRKIRGLSTNVLPQTDEELSTQNVINEMRNRIVIPLSTLEMNLSK 486

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             S  Q     ++  I   Q     + +  +       +  ++R   +  + +   L+  +
Sbjct: 487  ASTGQEFALALYHYIEQVQAVEHLESWRRVAEDNGYLE--LAREHEQAWNSISALLDEFV 544

Query: 538  RNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                     L   I  +                ++V +  +  AK LE  V+F +     
Sbjct: 545  EVLGEESLDLTSFIEIVVTGLDALEFSLLPPALDQVVLSDMENAKLLEMKVIFAIGMNDG 604

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            V   +   K  +     D                  +  +K   K+   E + L Y  ++
Sbjct: 605  VMPLRQKDKGILSDQDRDFLR-------------EQNSNLKASAKNNIGEEDLLAYKIVS 651

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
              SD+L +   +     K   +  +   +   F N      +   + +N++E  +Y  S 
Sbjct: 652  LPSDKLFLSYPAADEEGKVLTESNYLRKIKGQFKNLSEAVYLTDPSLLNEEEQSSYIRSR 711

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL------------------- 757
                     + +  K+      +    ++   +D  E                       
Sbjct: 712  QAVLGILTSQLQMYKRGYPVSNVWWDAYNSYFDDKEESRTAKQVFSSLYYENKTAPLQET 771

Query: 758  ------------NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIF 794
                        + S ++                  E      Q  + G I H  ++ I 
Sbjct: 772  TAKGLFGENIHASVSRMEKFFSCEFQHFAQYGLKLEERAHFQLQAVDMGEIFHAAMEWIS 831

Query: 795  TLPE--------------HKRKNFITSYCT---KNAKLWPAKEYKNLLLSITRLL--ENP 835
               +                      ++     ++  L  +K  + +   + +++     
Sbjct: 832  AELKRNNMDWGSLNIEECKHLAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATT 891

Query: 836  MMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQ--ISISQQN--IF 879
            ++       ++  V +                     ++++ GRID+  ++       + 
Sbjct: 892  VLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDVAEQDNRTFLR 951

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL--LIYVSEPKVFI 934
            I +YK+  H    +  + Y    Q+  Y  I+         K+      L +    +   
Sbjct: 952  IIDYKSSAHDLA-LTEVYYGLALQMLTYLDIVVMNAQKMLGKNAEPAGVLYFHMHNQFVQ 1010

Query: 935  IPQNKLNKAFA 945
              +       A
Sbjct: 1011 SDKELTEDQLA 1021


>gi|229183443|ref|ZP_04310668.1| ATP-dependent nuclease, subunit B [Bacillus cereus BGSC 6E1]
 gi|228600027|gb|EEK57622.1| ATP-dependent nuclease, subunit B [Bacillus cereus BGSC 6E1]
          Length = 1171

 Score = 82.7 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 75/765 (9%), Positives = 208/765 (27%), Gaps = 167/765 (21%)

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299  EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350  RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441  LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
            +K+ L               D+    C         +     +                 
Sbjct: 407  VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482  --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
              + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467  SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516  Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
            +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527  EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587  DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                       + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643  TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
             N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694  PNVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744  ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                        +  ++   +    + S ++   +         
Sbjct: 754  VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770  ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                 E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814  GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 873

Query: 809  CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
              +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874  LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864  -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       + GRID++  ++      + I +YK+      ++  + Y    Q+  Y 
Sbjct: 934  EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-SKSLDLTEVYYGLALQMLTYL 992

Query: 909  KIL---KDSYPNKSLVCL-----LIYVSEPKVFIIPQNKLNKAFA 945
             ++     ++  K          L +     +  +  +       
Sbjct: 993  DVVTSNAQTW-MKKGHAASPAGVLYFHIHNPIVEVKGDASEAEIE 1036


>gi|167038395|ref|YP_001665973.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|167038871|ref|YP_001661856.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter sp.
            X514]
 gi|300913541|ref|ZP_07130858.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X561]
 gi|307723444|ref|YP_003903195.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X513]
 gi|320116799|ref|YP_004186958.1| ATP-dependent nuclease subunit B [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
 gi|251764631|sp|B0KDB8|ADDB_THEP3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764632|sp|B0K212|ADDB_THEPX RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|166853111|gb|ABY91520.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter sp.
            X514]
 gi|166857229|gb|ABY95637.1| ATP-dependent nuclease subunit B-like protein [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|300890226|gb|EFK85371.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X561]
 gi|307580505|gb|ADN53904.1| ATP-dependent nuclease subunit B [Thermoanaerobacter sp. X513]
 gi|319929890|gb|ADV80575.1| ATP-dependent nuclease subunit B [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
          Length = 1149

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 93/793 (11%), Positives = 223/793 (28%), Gaps = 157/793 (19%)

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
               +     D    +  R  +  ++  ++             + +  S     +   +  
Sbjct: 260  NNISYEKPVDLNEGVPKRFEKNEEMAFLEKHLFSYPYKIYSKDTKNISLFKAVNVYSEVE 319

Query: 341  SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                     A  I  ++  +          ++  DI+V  R   D      L + + + Y
Sbjct: 320  ET-------AREIIRLVRDE---------NLRYSDIVVTAR---DLKRYHKLIKTIFSHY 360

Query: 401  KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ- 459
             I    + +  + ++  I  + +L    L      S    LK+   N +++DI  +    
Sbjct: 361  GIPHFIDLKLDIKNNPIIVYITSLFEIYLKNWSYESVFRHLKTGFTNLNKEDISFLENYV 420

Query: 460  RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK------- 512
                    ++ +++     ++   +     E   + +  +  +  +  L           
Sbjct: 421  LANGIKGGKWKEEWKYSFRNRLDKLFDDQDEKEALEKVNTIKNGISEPLNKFYKDFSNAN 480

Query: 513  --------GRQQFISRFGNEVIDVL-DEF-----LNFTLRNEQNSYSSLQELISELEQYP 558
                         + R   + I+ L  EF          +  Q     +  L   +E   
Sbjct: 481  TVREACEILYNFLVERDIPQRIENLIREFKENKEFEIANQYSQIWDIVVDVLDQMVEVMG 540

Query: 559  PTIKRAH------------------SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                                         +EV + +V   K   +  +F++     +F  
Sbjct: 541  EEKINIDLFSKILDIGFEAYQIGSIPPALDEVLVTSVDRMKSHNAKALFVIGANDGIFPA 600

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               ++  +                 +         +    K+   E   L+Y  +T  S 
Sbjct: 601  SSFEEGILTDED-------------RQILTSYEVELDRDTKAKVFEEQFLVYTALTSTSK 647

Query: 661  QLIICKHSNTSNEKKSNQR-------------TWYDMVYDSFHNDERVKKIKLTNSINKD 707
             L I         +                  T +  V +   ++E + ++   +    +
Sbjct: 648  FLRISYPIADHEGRSLRPSIIISRFKRIFPQITQFSNVIEMDTDEENLHRVSSPDPTFNE 707

Query: 708  EWIAYEWSTHHPENTPLE---------REETIKQLMDEQKIPKKLFSPIKNDINEPYIL- 757
               +++      +   L          +E   K++    +              +   L 
Sbjct: 708  MIKSFKEWDIKDKINSLWLDVYNWYSNKEVWRKRIEKVLEGFNYSNQVRVIPSAKIKRLY 767

Query: 758  ------NPSTIDTKGKTNLESLLS-DNQTFNR----------GLIIHKLL-QVIFTLPEH 799
                  + S ++          +    +   R          G+ +H +L +V   L + 
Sbjct: 768  KDEINFSVSRLEKYAACPFAYFVQYGLKAKERKIYSFDPPDLGIFMHNVLNEVSKALEKE 827

Query: 800  K--RKNFITSYCTK--------------NAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
                ++    YC +                 L  +  Y+ L   +TR+L N +    +S 
Sbjct: 828  DKTWEDLDREYCDEVVNIVVDNMLKGVSEHILKSSPRYEYLSKRLTRVLSNAV--WVISE 885

Query: 844  DSYS--------EVSV--------SGKINCPKKDIIISGRIDQI--SISQQN--IFIFEY 883
                        EV+            I    ++I + GRID++      +   I I +Y
Sbjct: 886  HIKRSSFIPSGHEVAFGENQMYPPIKIILSNGEEINLIGRIDRVDVFEKGEESYIRIIDY 945

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV---CLLIYVS-EPKVFIIPQNK 939
            K+  +   ++E + Y    QL IY   + +S   ++       + Y   +  +    ++ 
Sbjct: 946  KSG-NKELKLEDVFYGLELQLLIYLDAILESADKENTDIKPAGIFYFRIDDPIVKADKDI 1004

Query: 940  LNKAFA-EISTKI 951
             ++    EI  K+
Sbjct: 1005 TDEELQKEILKKL 1017


>gi|308182529|ref|YP_003926656.1| hypothetical protein HPPC_01815 [Helicobacter pylori PeCan4]
 gi|308064714|gb|ADO06606.1| hypothetical protein HPPC_01815 [Helicobacter pylori PeCan4]
          Length = 778

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/472 (12%), Positives = 133/472 (28%), Gaps = 82/472 (17%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLETSGFDLSASPL----LDLESLTLALLEQQSSKEKAPLKEVHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   V +VD     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKVVIVDFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L K+ K         L Y+    
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EITLSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++  + H +       L       ++   E    
Sbjct: 480 ----------------ESETSKASNMLLELNLHTEPIKDAYTLFAPSPLKDYQEEEIKAA 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++       +   L       ++ +                      K   ES   +N
Sbjct: 524 IPKDFSF----SASSLNAFLTCKRRFYYHY------------------MKCFKESPKDEN 561

Query: 778 QTFNRGLIIHKLL-QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN---LLLSITRLLE 833
            +   G ++H+LL +                +  +  +    KE  +    L  I     
Sbjct: 562 NSA-VGSLLHELLKEAYEKDKNPYALEERLIWLLETRENITPKERLDTLVALKKIQAFYL 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT------H 886
                          + +        + ++  GRID+I  +    I + +YK        
Sbjct: 621 KE--KERFKAKIKI-LDLEKSFETIIQGVVFKGRIDRIDKTADNEIILLDYKFKNDLKLD 677

Query: 887 --------HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                      P EI  I   +  Q++IY   LK+    + +      + + 
Sbjct: 678 NMSEKQRKSLSPIEISQISTDY--QMAIYACALKNLGYKEPIKAFFYDLRKG 727


>gi|254458617|ref|ZP_05072042.1| ATP-dependent DNA helicase, RecQ family, putative [Campylobacterales
            bacterium GD 1]
 gi|207084925|gb|EDZ62212.1| ATP-dependent DNA helicase, RecQ family, putative [Campylobacterales
            bacterium GD 1]
          Length = 1596

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 14/142 (9%)

Query: 150  EDLIINTNDLLKKRDVSAWIRYKIDQEINHILI-DEVQDTSLIQWEVIRSLTEDFFVGKN 208
            +DL+ N   L            KI+     +L+ DE QD +   +E+I++L+        
Sbjct: 1137 DDLLKNVVAL----AAKQINDGKIEVPFKTVLVLDEYQDINADGFELIKALS-------T 1185

Query: 209  THSSPRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
             H + + L AVGD+ Q I S  +GA+ K +   +        +        EL  +FRS 
Sbjct: 1186 AHENKKRLIAVGDDDQCILSNVNGADIKYIKLFEDEFGINDEDIKSYAQ-YELLTNFRSL 1244

Query: 268  ADILTVVDKVFSIPENAQGLSE 289
              I+   +   +          
Sbjct: 1245 QSIVEYSNNFINNINMRYKKHP 1266


>gi|229095724|ref|ZP_04226703.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-29]
 gi|228687557|gb|EEL41456.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-29]
          Length = 1166

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 74/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++ +     ++   ++       +A  I  ++  +T          + +DI VL+
Sbjct: 294 EARPNEKYYDEASVTISTAANLRAEVEGVAREIRRLVADET---------YRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKEMMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 IEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V +  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 582 DQVLVANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 639

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 640 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 --------------------FSPIKNDINEPYIL-------NPSTIDTKGKTN------- 769
                                   K        L       + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVIGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|229149443|ref|ZP_04277679.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1550]
 gi|228634085|gb|EEK90678.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1550]
          Length = 1171

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEE---------NYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|110802216|ref|YP_697369.1| ATP-dependent nuclease subunit B [Clostridium perfringens SM101]
 gi|123047632|sp|Q0SWW7|ADDB_CLOPS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|110682717|gb|ABG86087.1| ATP-dependent nuclease subunit B [Clostridium perfringens SM101]
          Length = 1158

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 82/708 (11%), Positives = 193/708 (27%), Gaps = 152/708 (21%)

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A  I  ++           +  + KDI V+ R   +      +   +  +Y+I    
Sbjct: 319  EFVAKDILRLVRE---------KQYRFKDISVICR---EVDNYEKVISAIFAEYEIPYYI 366

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL----FNFSEDDIFK-----IC 457
            + +  +  +  I  + +    I       S    LK+ L          ++       + 
Sbjct: 367  DKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGIEGAELIDELENYVL 426

Query: 458  TQRHETETVYEYIQKF------ANCGISKFQHVIKYIHELIHIA---------------- 495
                + +   E    +            + +  ++ ++++                    
Sbjct: 427  AYGIKGKKWMEEWVNYSSSILKEEEISEENKQRLERLNDIRETIVTPLDEFNKECKGKKT 486

Query: 496  ---QFCSPHDFFTLILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQ 541
                    ++F    L       +++  F             EV D+  + L   +    
Sbjct: 487  LKEFAIILYEFLDSKLNIMDTIDKYVEYFKENDMAIEAKEYSEVRDIFIDVLEQAVDVLG 546

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            N    L E +  L       +        ++V I  +   K   +  ++++     V   
Sbjct: 547  NEVMDLDEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVNDGVLPS 606

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               ++  +  +  +          S +R  I              E   L+Y   T A +
Sbjct: 607  ASKEEGILSDNDREILLEKGISLASDTRTKIF-------------EEQFLVYTAFTIAEE 653

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L++         K          +     N +   +     +   D+  A   + +   
Sbjct: 654  YLVVTYPLADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVNDKYDKISAKIPTLNELM 713

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------------------ 756
                +  +  +     + +        K      Y+                        
Sbjct: 714  IAIRKNYDGAEIDDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYED 773

Query: 757  ------LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ-------- 791
                  L+ S ++   +              +  + +    + G  +H++L         
Sbjct: 774  NKNKISLSVSRLERYAQCPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFTNEIKE 833

Query: 792  ---VIFTLPEHKRKNFITSYCTKNAK------LWPAKEYKNLLLSITRLLE------NPM 836
                   L +   KN I S      K      L  +K Y        R+L       +  
Sbjct: 834  KDLKWSDLSKENCKNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQ 893

Query: 837  MTTAMSCDSYSEVSV-------SGKINCP-KKDIIISGRIDQIS---ISQQNIF-IFEYK 884
            M  +      +E++        S K++ P  +   ++GRID+I    +  +    I +YK
Sbjct: 894  MKRSDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRIDKLNLDGETYLRIIDYK 953

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
            T      ++         QL +Y   L    ++   N+++   ++Y  
Sbjct: 954  TGSKKF-DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFR 1000


>gi|91791292|ref|YP_552242.1| UvrD/REP helicase [Polaromonas sp. JS666]
 gi|91701173|gb|ABE47344.1| UvrD/REP helicase [Polaromonas sp. JS666]
          Length = 587

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 62/500 (12%), Positives = 125/500 (25%), Gaps = 114/500 (22%)

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA--EPKR 236
           H++IDE QD   +Q+ +                +  T   +GD+ Q+IY +  A   P  
Sbjct: 183 HLVIDESQDNDELQFALATLHAL----------TGVTTTLIGDDDQTIYEWRRAMGYPGL 232

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            L                 ++I L  ++RS   I+   D++       +          +
Sbjct: 233 -LSFATTF---------NATVITLGDNYRSLRSIVESADQLIRHNNGHR--------IEK 274

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
              ++ G  G+V                             + ++   +       +   
Sbjct: 275 VFVAKRGPGGSV--------------------------MAEKTATEWGMVELSTQIVLEH 308

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +      +   KR +Q     +L R       +                      +    
Sbjct: 309 VEECQDPNGRFKRQVQTGQFGLLSRNNFILDDVEAELLREGVR-----YVRQGTSILQKE 363

Query: 417 AIKDLMALGRFILSQEDDLSFVCM-LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
           A K +  L   +   +       + +     + + +   +I     +         +   
Sbjct: 364 AAKYIYELLGAVYGYDIKGISFLLQIHGVSASMTNNVCREISGHERDFVNGKLGNFERFG 423

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
            G       + ++           P +    +       ++ +   G      +      
Sbjct: 424 AGSDAIDKTVAWLVAQRAEVDKQKPREVIGNVCA---VVREVLHPAGPWDRKNIQNRKCI 480

Query: 536 T---LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                  E+     L  +           +    A  N V +MT H +KGLE   V ++ 
Sbjct: 481 AAVQRCLERMHQPVLTRV------AMLQNREFKGAERNAVNLMTFHGSKGLEFNKVIILG 534

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               V   K                                           +   RL Y
Sbjct: 535 ADENVCPGKG----------------------------------------EFQSERRLFY 554

Query: 653 VGMTRASDQLIICKHSNTSN 672
           V +TRA D L+       S 
Sbjct: 555 VAVTRAKDSLLALYSGTPSR 574


>gi|253681891|ref|ZP_04862688.1| ATP-dependent nuclease subunit B [Clostridium botulinum D str.
           1873]
 gi|253561603|gb|EES91055.1| ATP-dependent nuclease subunit B [Clostridium botulinum D str.
           1873]
          Length = 1149

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 106/938 (11%), Positives = 266/938 (28%), Gaps = 175/938 (18%)

Query: 84  IITQEINKKSPDLKEKLKKSQDEFI----KIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
             T    +   +    +      +     ++R   N  +  +     +T    +   +EE
Sbjct: 123 FATAANQEGFTNNISDIITELKRYDITPSELRASLNLIEEDEFLKDKITDISNIFQEFEE 182

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           +  K   +D ED +      L + +       + +     I IDE    +  Q+++   L
Sbjct: 183 SLHK-NYIDNEDELTLLCKKLDESE-------RYNG--AEIWIDEFSSFTPQQYKIFEKL 232

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
            +              +    D  + I S            ++   K   + G       
Sbjct: 233 IKKA--------KRINVTLCMDYYKEIDSTD--VFAPTKNTEQKLIKILEDNGIAIDK-- 280

Query: 260 LPLSFRSTADILTVVD-KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
                     IL   +   F   E  + L E+             +   V++   V    
Sbjct: 281 --------PIILNNNNLDRFKDNEEMRFLEENYFKYPYK--PYKDKTENVKIIRAVNPYS 330

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
           + +                           IA  I  +          K   I+ ++I V
Sbjct: 331 EIEN--------------------------IAKEIVKI---------TKDTDIRYREIAV 355

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           + R   +      + + + N+Y+I    + +  + D+  I  + ++      +    S  
Sbjct: 356 ISR---ELDGYEKIVKTIFNEYEIPHFIDKKKEIDDNPLIVLITSVIEISNKRWSYESMF 412

Query: 439 CMLKSPLFNFSEDDIFKI--------CTQRHETETVYEYIQKFANCGISKFQ-HVIKYIH 489
             LK+ L N  ++DI  +           +++  +++EY  +     I+  +  V + + 
Sbjct: 413 RYLKTGLANIEKEDIDLLENYVLAYGIRGKNKWASIWEYGNEENLEKINDIRVRVSEPLI 472

Query: 490 ELIHIAQFCSPHDFFTLI-------LGAKKGRQQFISRFGNEVIDVL-----------DE 531
           +     +  +  +            +   +  ++++ RF  E    L            E
Sbjct: 473 KFYSKIKGKTNAEEICTAVYNFLCSIEVNETIEKWVCRFKEEGNQQLVKEYSQIWNIVIE 532

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFL 590
            L+  +   +     L++ +  L       K        ++V +  V   +  +  ++++
Sbjct: 533 LLDQVVEVFKEEKLELKDFVKILSLGFKDHKMGLIPPSLDQVLVSAVERVRTHKIKLLYI 592

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE-YNR 649
           +     +F      +  +  S               +++    +     +  T  E Y R
Sbjct: 593 IGVNDGIFPAISKNEGILSDSDRGYLKKVGVEIAEDTKSKAFEEQYLIYRTLTITEKYLR 652

Query: 650 LLY-------------VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
           L Y             + +TR           + +  ++  +     +  +    +  V 
Sbjct: 653 LCYSIADYEGKALRPSIIITRFKALFPSITEESDNILEEEEKEDIELITREIPTFNTLVS 712

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETI--KQLMDEQKIPKKLFSPIKNDINEP 754
            I+  +   K      +    + EN   + + +     +     +       I+      
Sbjct: 713 VIRREDEKIKVNPFWSDVYKWYSENPNWKEKVSTVFSAVSYTNAVNDISEEKIRKLYGNR 772

Query: 755 YILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKL---LQVIFTLPEHK 800
              + S ++   +              E  L      + G  +H +             K
Sbjct: 773 LYFSVSRLEKYAQCPFGYYIKYGLKAKERKLFALTPPDLGTFMHSVIDEFSEAVDKNSLK 832

Query: 801 RKNFITSYCTK----------------------NAKLWPAKEYKNLLLSITRLLEN---P 835
             +    +C K                        K +  +  + L+ +I  ++E+    
Sbjct: 833 WYDIEKEWCKKTVSEIVDKKAEESSRGIFSSSPRYKYFTERLKRVLIKTILVIIEHLKRS 892

Query: 836 MMTTA-----MS-CDSYSEVSVSGKINCPKKDIIISGRIDQI----SISQQNIFIFEYKT 885
                         +SY  + +        + + + GRID++      ++    I +YK+
Sbjct: 893 GFQPIGHEIGFGYEESYPPIEIELS---NGEKVKLIGRIDRVDKLDMENKDYYRIIDYKS 949

Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSL 920
             +    +  + Y    QL  Y   +   ++      +
Sbjct: 950 G-NKDFSLSDVYYGLQLQLLTYLDAILTNEEIKKKYPV 986


>gi|196036226|ref|ZP_03103625.1| ATP-dependent nuclease, subunit B [Bacillus cereus W]
 gi|228926279|ref|ZP_04089353.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|195991201|gb|EDX55170.1| ATP-dependent nuclease, subunit B [Bacillus cereus W]
 gi|228833376|gb|EEM78939.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
          Length = 1171

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 74/765 (9%), Positives = 208/765 (27%), Gaps = 167/765 (21%)

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299  EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350  RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441  LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
            +K+ L               D+    C         +     +                 
Sbjct: 407  VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482  --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
              + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467  SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516  Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
            +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527  EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587  DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                       + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643  TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
             + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694  PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744  ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                        +  ++   +    + S ++   +         
Sbjct: 754  VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770  ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                 E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814  GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 873

Query: 809  CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
              +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874  LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864  -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       + GRID++  ++      + I +YK+      ++  + Y    Q+  Y 
Sbjct: 934  EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-SKSLDLTEVYYGLALQMLTYL 992

Query: 909  KIL---KDSYPNKSLVCL-----LIYVSEPKVFIIPQNKLNKAFA 945
             ++     ++  K          L +     +  +  +       
Sbjct: 993  DVVTSNAQTW-MKKGHAASPAGVLYFHIHNPIVEVKGDASEAEIE 1036


>gi|289643896|ref|ZP_06476000.1| RecB family exonuclease-like protein [Frankia symbiont of Datisca
           glomerata]
 gi|289506282|gb|EFD27277.1| RecB family exonuclease-like protein [Frankia symbiont of Datisca
           glomerata]
          Length = 332

 Score = 82.3 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 66/213 (30%), Gaps = 35/213 (16%)

Query: 757 LNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR------- 801
           L+PS         L              +    RG ++H +L+ +F  P   R       
Sbjct: 24  LSPSRAGDFMNCPLRYRFRVIDRLPEPPSSAAVRGTVVHTVLERLFDHPPPGRTIAAAEA 83

Query: 802 --KNFITSYCTKNAKL----WPAKEYKNLLLSITRLLE---NPMMTTAMSCDSYSEVSVS 852
             +        +  +L        E    L S   LL    +      ++  +  E+ V 
Sbjct: 84  LLEPAWHDLLAREPELATLFADEAERAAWLESARSLLTGYFSLENPAGLTPAAR-ELYVE 142

Query: 853 GKINCPKKDIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
             ++     + + G ID++  +       + + +YKT        E      + Q+  Y 
Sbjct: 143 HVLDS---GVRLRGYIDRLDEAATRDGPALRVVDYKTGRSPGPAFEGQA---LFQMKFYA 196

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
            +L            L Y+++     +  ++ +
Sbjct: 197 YLLWRIRGVIPRELRLYYLADRTWIRVQPDESD 229


>gi|210623664|ref|ZP_03293973.1| hypothetical protein CLOHIR_01923 [Clostridium hiranonis DSM 13275]
 gi|210153429|gb|EEA84435.1| hypothetical protein CLOHIR_01923 [Clostridium hiranonis DSM 13275]
          Length = 1158

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 103/980 (10%), Positives = 252/980 (25%), Gaps = 222/980 (22%)

Query: 82   KNIITQEINKKSPDLKEKLKKSQ---DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
            K+           D+  +LK+     D   +I             +    +AK +   +E
Sbjct: 115  KSYAQPGFTTAISDMISELKQFMITPDRLDEIIGESGDTLPENLIMKLKDIAK-IYREFE 173

Query: 139  EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
            +   +    D+ D+  +   +L ++         +D     + ID     +  Q+E+++ 
Sbjct: 174  KKLHE----DYVDM-HDRVVMLTEKIAECSFLDDMD-----LYIDGYTSFTPNQYELLKE 223

Query: 199  LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            L +              LF +         F           +    +      ++   +
Sbjct: 224  LMKKAKSTT-------FLFTMDSP------FKTGYADYFASTRNTYNRIKDICEKEGIKV 270

Query: 259  ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            E  ++         + ++        + L         +                     
Sbjct: 271  EKDVN---------LCNENIKRFIGNEELQHLERYYNSY---------------PYSIYQ 306

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
                  +   +++ ++ + +          +A  I+N I              + KDI +
Sbjct: 307  KKTEKIRIREYSNLYNEVEE----------VAKEIANDIIDGR---------YRYKDITI 347

Query: 379  LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
              R          L + + ++YKI    N +    ++  I  ++++      +    +  
Sbjct: 348  AARN---IDSYESLVKSIFSEYKIPFYINKKSEAKNNPIITMIISVLEMKKRRYGYETMF 404

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-------------------- 478
              LKS L +F+ED+I  +               +                          
Sbjct: 405  RYLKSGLLDFTEDEISLLENYVIANGISGNKWFEDVWEYRLPNSFYEYEESEEELETKKR 464

Query: 479  ---------SKFQHVIKYI------------HELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                     +  +   + +              L    +  +  +     +   + +   
Sbjct: 465  INDIKNRVIAPIKRFDEKLSSKNRKTVEDICRYLYEFLEDINIFEKIENTIDILREKGML 524

Query: 518  I-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIM 575
              +   ++V + + + L+  +    +   SL+  I  +         +    + ++V + 
Sbjct: 525  ESAARYSQVWNTVSDLLDQLVEIMGDEKISLERFIRIVNIALDEYELKTIPPSIDQVTVT 584

Query: 576  TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
             V       +  ++L+ T   VF     +   +  S               SR  +    
Sbjct: 585  EVDRMNNPNTKHLYLIGTVDGVFPMPSKENGLLSDSDRGKLSDMNVELDKDSRKRVF--- 641

Query: 636  IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                      E   L+Y  +T  SD+L +      S  K          +   F   +  
Sbjct: 642  ----------EEQFLVYKAITATSDKLTVSYPIADSEGKTQRASIIISRIKKLFKYVDIK 691

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                    + ++E +    S     NT +++ +       E  I        +  +N+  
Sbjct: 692  SY--FLEGVYEEEDLKEVNSKIPTFNTMVDKIKEAADKDFENGISDIWKDTYEYYLNDDR 749

Query: 756  ---------------------------------ILNPSTIDTKGKTNLESLLSDN----- 777
                                              ++ S ++          +        
Sbjct: 750  YNDITKRIVEGIDFTNQFEYVDEDKIKELYNSKTISVSRLEKYASCPFAYFIEYGMKAKD 809

Query: 778  ------QTFNRGLIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLWPAKEYKNLLLSI 828
                     + G  +HK+++                   Y          +    +   I
Sbjct: 810  RKEYLFTAPDVGSFVHKVIENYSKTMHKDGITWHEVDDKYIELRVSEMVDELIAKIPGFI 869

Query: 829  TRLLENPMMTTA-----------------------MSCDSYSEVSV-------SGKINCP 858
                 +P                               D Y EV         S ++   
Sbjct: 870  LE--SSPKYKYLAHRLKVLITVSIKIIADQIKQGRFEPDDY-EVEFGKKRKYPSIQVEYK 926

Query: 859  KKDII-ISGRIDQIS----ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL- 911
            + +I+ + G+ID+I        +    I +YK        +  + Y    QL +Y   + 
Sbjct: 927  ENEIVELIGKIDRIDKYINEENKEFVRIVDYKWGK-NDINLNDVYYGLQLQLLVYMDAIL 985

Query: 912  --KDSYPNKSLV-CLLIYVS 928
               +   N  +    ++Y  
Sbjct: 986  EGGEIPDNIPIKPAAMLYSR 1005


>gi|296272006|ref|YP_003654637.1| hypothetical protein Arnit_0466 [Arcobacter nitrofigilis DSM 7299]
 gi|296096181|gb|ADG92131.1| conserved hypothetical protein [Arcobacter nitrofigilis DSM 7299]
          Length = 786

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 61/485 (12%), Positives = 126/485 (25%), Gaps = 60/485 (12%)

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            +   ++K+    +      E   K +         +I  I ++ +     +  D     
Sbjct: 301 INNSKLYKVINSIYSYLNENERKTKESIEFYKINTEMIDSIKKIWNKKLDKNNFDILIEY 360

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
           L + +  ++   +F  E+   LD            S + L +   ++             
Sbjct: 361 LKSIEHNKELTEKFD-ELTYKLDHL------FFNTSQNILFKEAVKILIQKIQKITLDDI 413

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           N   + +M +   + +E   V + D          IK   +   +     +P    +   
Sbjct: 414 NSGLITVMGLLETRAVEFEAVIICDFNENYIPKSSIKDKFLSSIIKKRVKLPTQKDRENL 473

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
           +                    RL+          L I    N +             V  
Sbjct: 474 QKYYY---------------YRLMNKA-----KNLYISYTQNET-----------MQVSR 502

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                 + +    T      + +    S  H   T     +  KQ      + K L    
Sbjct: 503 FADELFKDEINPSTKDKQYKQILYKNKSIEHFNETIEYEIDLSKQEWSATSLKKYLECKR 562

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ------VIFTLPEHKR 801
           K  +     +    I               + F  G ++HK L+       +  +     
Sbjct: 563 KYYLEYICKIKEHNISL-----------KPKGFELGSMVHKTLESAYKSFQVQNINYELI 611

Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
           K+       +N  L   KE   + L    +             + S + +          
Sbjct: 612 KSLFEKQMNENPFLLLDKE---IFLRKLNIFVEFENKR-FEDKNLSVLEIEKDFKFDYNG 667

Query: 862 IIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
           I++ G ID+I        + +YKT        I+    +   QL  Y     + +    +
Sbjct: 668 IVLKGSIDRIDKQDDKYLLIDYKTSASLKIDSIKTYENSVDFQLEFYYLACLELFGYDKI 727

Query: 921 VCLLI 925
                
Sbjct: 728 KAYYY 732


>gi|229177655|ref|ZP_04305032.1| ATP-dependent nuclease, subunit B [Bacillus cereus 172560W]
 gi|228605845|gb|EEK63289.1| ATP-dependent nuclease, subunit B [Bacillus cereus 172560W]
          Length = 1166

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEE---------NYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 582 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 639

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 640 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-SKGLDLTEVYYGLALQMLTY 986


>gi|145295633|ref|YP_001138454.1| RecB family exonuclease [Corynebacterium glutamicum R]
 gi|140845553|dbj|BAF54552.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 278

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 70/228 (30%), Gaps = 34/228 (14%)

Query: 752 NEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK- 802
             P  L+PS      +  L                   +G ++H +L+ +  LP  +R+ 
Sbjct: 12  PRPLALSPSRAGDYQQCPLLYRFRAIDRLPEPKTVAQVKGTLVHAVLEYMHKLPREEREY 71

Query: 803 -NFITSYCTKNAKL-WPAKEYKNLL--LSITRLLENPM--MTTAMS-------CDSYSEV 849
              +       A++     E K L+    +   L +    +              +  E+
Sbjct: 72  PAMVKQLKPTWAQMCEEDAELKELVPEDELYDFLVDSRTLLRGYFEMENPQGFDATECEM 131

Query: 850 SVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            +   +      + + G ID++  +    + + +YKT      +          Q+  Y 
Sbjct: 132 YLDTVLP---NGVPVRGFIDRVDTAPTGQVRVIDYKTGKKPKPQWSQQA---QFQMLFYA 185

Query: 909 KILKDSYPNKSLVCLLIYVSEPKVFIIPQNK-----LNKAFAEISTKI 951
            +    +        L+Y+       +  ++       +   ++  KI
Sbjct: 186 LVYWRMFNEIPAQLRLMYLKVNDSMFLNPSREQLEFFERDLGDLWAKI 233


>gi|330822270|ref|YP_004362491.1| ATP-dependent DNA helicase [Burkholderia gladioli BSR3]
 gi|327374107|gb|AEA65461.1| ATP-dependent DNA helicase [Burkholderia gladioli BSR3]
          Length = 608

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 66/227 (29%), Gaps = 28/227 (12%)

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               LK+      +   I +   HILIDE QD   +   ++  L            +   
Sbjct: 188 AYRTLKEHPE---LLAAIARRYPHILIDEAQDIGTMHEAILELLIG----------AGSR 234

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +  +GD  Q IY F GA  K          +R          + L  +FRS   I+ + +
Sbjct: 235 VTLIGDPNQGIYDFAGANGK----FLTEYHQR-----DGVKPLYLHRNFRSAPSIVDLAN 285

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIG--QVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            +         ++E +     H +   G  +    +L         +       S     
Sbjct: 286 SLC----GRSDVAERAVPMKPHGAFFTGYKRSQQQELITAFQGALPAAGADITRSAVLCR 341

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                ++     A      +        +    K  +   K + V V
Sbjct: 342 GRGLADTLRGEEAPAGQGQVKAFAAAAVLRDRRKDFLKAFKRVAVAV 388


>gi|299822107|ref|ZP_07053993.1| ATP-dependent nuclease subunit B [Listeria grayi DSM 20601]
 gi|299815636|gb|EFI82874.1| ATP-dependent nuclease subunit B [Listeria grayi DSM 20601]
          Length = 1161

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 82/718 (11%), Positives = 193/718 (26%), Gaps = 157/718 (21%)

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
            +  P++    +    + Q ++    A  IA  I  ++ +         R    KDI VL
Sbjct: 292 EESAPKRYVGENTSLHIHQANNRRAEAEGIARKIRELVAS---------RQFDYKDIAVL 342

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           VR          L        ++    + +  + DH  I+ + +    +       +   
Sbjct: 343 VRGVD---KYETLVSRAFQGNEVPYFLDKKRTMADHPFIEFIRSTLEAVQQNWRYENIFQ 399

Query: 440 MLKSPLF---------NFSEDDIFKICTQRHETETVYEYIQKFANCGIS----------- 479
            +++  F         N  + D+ +     +  +  + + +K                  
Sbjct: 400 AIRTEFFFDLETPNPLNRKQADLLENYCIENGIKAKWRWQKKGDWIYQKVKGLTIELAPQ 459

Query: 480 -----KFQHVIKYIHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
                  Q  I  +   I     A   +  D  + I       +   +    E +++  E
Sbjct: 460 TDEELAMQETINTLRYRIQKPLEALETAFEDAVSGIDYGTALYRYLENVQAAERLEMWRE 519

Query: 532 ------FLNFTLRNEQNSYSSLQELISELEQYPPT------------------IKRAHSA 567
                  L     +EQ   + +  L   +E                              
Sbjct: 520 QAEANDLLELAREHEQAWTAVMGMLDEFVEILGDDPLDFDTFLEVVTTGLDALEFSLLPP 579

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             ++V +  +  A+ L   V+F+      V   +      +               +S  
Sbjct: 580 TLDQVIVSDMDVARLLRVKVLFIAGANDGVLPLRKKDGGILSDDDRVAISEQGVPIRSGL 639

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
            ++++             E   L Y   T AS QL +   +     K   +  +   +  
Sbjct: 640 TSHLI-------------EEEHLAYRLFTTASSQLYLSYPAADDEGKLLTESNYLRKIKA 686

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF--- 744
            F        +   + +   E   Y  +     +    + +  K+      +    +   
Sbjct: 687 HFEMLTEEIYLNDPSLLPIREQSDYVRAKEATLSQLTAQLQLYKRGYPVASVWWDAYNYF 746

Query: 745 -----------------------SPIKNDIN-----EPYILNPSTIDTKGKTNL------ 770
                                   PI+++       E    + S ++             
Sbjct: 747 IRKSDWSAVVKHVLGSLFYGNRTQPIRSETAANLFGENIFASVSRMEKFFSCEFQHFAQY 806

Query: 771 -----ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF--------------ITSYCT- 810
                E      Q  + G + H  ++ I    + +++ +                 Y   
Sbjct: 807 GLKLEERAEFKLQAVDMGEVFHGAMEWISNEIKRRQQEWGSLTDLECQEIARDAIRYLAP 866

Query: 811 --KNAKLWPAKE-------YKNLLLSITRLLENPMMTTAMSCDSYSEVSV--------SG 853
             ++  L   K         + ++   T +L      +A       EV            
Sbjct: 867 KIQHEILLSTKRMAYIQYKLEQIIARATHVLNKQAKVSAFRPLGL-EVDFGIKGQLPPMQ 925

Query: 854 KINCPKKDIIISGRIDQ--ISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                ++++++ GR+D+  ++  +    + I +YK+  H    +  + Y    Q+  Y
Sbjct: 926 IKLDKQRELLLQGRVDRIDVAKEEDRSFLRIIDYKSSSH-DLRLTEVYYGLALQMLTY 982


>gi|196044124|ref|ZP_03111360.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB108]
 gi|301052777|ref|YP_003790988.1| ATP-dependent nuclease subunit B [Bacillus anthracis CI]
 gi|196024763|gb|EDX63434.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB108]
 gi|300374946|gb|ADK03850.1| ATP-dependent nuclease, subunit B [Bacillus cereus biovar anthracis
            str. CI]
          Length = 1171

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 74/765 (9%), Positives = 208/765 (27%), Gaps = 167/765 (21%)

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299  EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350  RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441  LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
            +K+ L               D+    C         +     +                 
Sbjct: 407  VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482  --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
              + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467  SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516  Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
            +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527  EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587  DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                       + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643  TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
             + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694  PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744  ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                        +  ++   +    + S ++   +         
Sbjct: 754  VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770  ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                 E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814  GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 873

Query: 809  CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
              +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874  LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864  -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       + GRID++  ++      + I +YK+      ++  + Y    Q+  Y 
Sbjct: 934  EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-SKSLDLTEVYYGLALQMLTYL 992

Query: 909  KIL---KDSYPNKSLVCL-----LIYVSEPKVFIIPQNKLNKAFA 945
             ++     ++  K          L +     +  +  +       
Sbjct: 993  DVVTSNAQTW-MKKGHAASPAGVLYFHIHNPIVEVKGDASEAEIE 1036


>gi|229042982|ref|ZP_04190713.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH676]
 gi|228726322|gb|EEL77548.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH676]
          Length = 1166

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVANE---------KYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 582 DQVLIANIDHSRLSDVRATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 639

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 640 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|317488288|ref|ZP_07946854.1| ATP-dependent nuclease subunit A [Eggerthella sp. 1_3_56FAA]
 gi|316912628|gb|EFV34171.1| ATP-dependent nuclease subunit A [Eggerthella sp. 1_3_56FAA]
          Length = 601

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 56/208 (26%), Gaps = 12/208 (5%)

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                +    E  P  R   +  + D  +         ++D      + P+ +       
Sbjct: 351 PPEPRAEEGVEPAPEPRLFFVPVVDDASRSTLFAGGSARDDAFSYSSIAPNPVPAPAGEG 410

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
                  ++  + G   H+  Q+   +   +  +         A      +   L  +  
Sbjct: 411 APFAADADKATDLGSAFHRAAQL--AVETGRVPDAARLGVLSEAYALSTGQRARLADACE 468

Query: 830 RLLENPMMTTAMSCDSYS-EVSVSGKINCPKKDIIISGRIDQISISQQ-----NIFIFEY 883
           R   +      +       EV     I+    D  + G ID +             + +Y
Sbjct: 469 RWFSSATYAETLQWGLRRAEVPFFVPIS----DAFVEGEIDLLCTDDAQLAGARALVVDY 524

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           KT     +  E +   H+ Q   Y   L
Sbjct: 525 KTGGSDGEAPEALCSKHLLQAQCYAYAL 552


>gi|283956858|ref|ZP_06374331.1| hypothetical protein C1336_000320020 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791584|gb|EFC30380.1| hypothetical protein C1336_000320020 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 788

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 69/532 (12%), Positives = 156/532 (29%), Gaps = 66/532 (12%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              I+   R       I V+  D     + L + D   +     +    +S    L    
Sbjct: 252 MDEISHFVRKGLKSENIVVITPD-ESFCEFLRLFDKDNML----NFASGISIKESLFYQK 306

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F    +            E  +E  Q   +   +    +     E           ++F 
Sbjct: 307 FQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 366

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L          +     +  +  E   F     +N   +L+ELI  L     +     
Sbjct: 367 KLLALF-----LENEKQELIYLIRKELY-FIKDLLKNQSLTLKELI-HLFFMQISQLSLS 419

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V +M +  ++GL    V LVD   +    + + ++ +   +    G+  +  + 
Sbjct: 420 DVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRE 479

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             +                    R  Y  + + + ++ IC   N    K           
Sbjct: 480 NLQ--------------------RFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDF 519

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +   H  ++     L       +           ++ P E   +  +    +   +  + 
Sbjct: 520 FYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSRFNLLENQKRTYYY 579

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKN 803
               ++ EP +L+                 +++  N+G  IHK+L++             
Sbjct: 580 RYILNLAEPRVLS----------------EESKAKNQGNFIHKMLEIYYKNYANNDFDIK 623

Query: 804 FITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCP 858
              +   K  +       + +   L   +  +N       S     +++E+ ++  +   
Sbjct: 624 AFANLLNKEYQKYNISELDLEVFKLKFIQFAKNE--KEHFSKGFYVAHTELELNNILKLG 681

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              I + G ID+I  S++   I +YK+                 QL+ Y+ +
Sbjct: 682 ADSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSY---------QLAFYQAL 724


>gi|225863092|ref|YP_002748470.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB102]
 gi|225789875|gb|ACO30092.1| ATP-dependent nuclease, subunit B [Bacillus cereus 03BB102]
          Length = 1171

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|112789955|gb|ABI21622.1| Smu21A [uncultured organism]
          Length = 452

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 74/552 (13%), Positives = 134/552 (24%), Gaps = 152/552 (27%)

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  Q+IYSF GA P  ++  KR   +          ++ L   +RST  ++ + + + + 
Sbjct: 1   DPSQTIYSFAGASPDHLVGFKRWFPQ--------AQVLRLERDYRSTDQVVELANGLLAA 52

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                          R R       G   ++ +   +                       
Sbjct: 53  ARG-------PIARARLRLRSEVGPGPAPVFAEYPDEPAEADGVA--------------- 90

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
                                + +       +  +I VL R    + +            
Sbjct: 91  --------------------AVVAALVAAGTKPSEIAVLFRINAQSEVYEQAL----TSA 126

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            +  V        D   +K    L R     E D +        L              +
Sbjct: 127 AVPYVVRGLERFFDRAEVKQGTTLLRGAARAERDGADPAATAGEL------------PAQ 174

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
                           G    +   + +  L+ +A                         
Sbjct: 175 VRAVLASAGWSSDPPSGSGAVRARWESLAALVSLADDL---------------------- 212

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
                               +   + L +L++ELE          +   + V + T+H A
Sbjct: 213 ------------------AAREPSAGLPDLVAELESRASAQH---APAADGVTLATLHAA 251

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           KGLE   VFLV                                           L+    
Sbjct: 252 KGLEWEAVFLVGLADGTVP-----------------------------------LVHAEG 276

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
               EE  RLLYVG TRA   L +    + S + ++ +R    +        + ++    
Sbjct: 277 DDQIEEERRLLYVGATRAKRVLSLTWARSRSPQGRNTRRPSRFL--------DGLRPSAS 328

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
           +         A   +    +           Q   E+KI +    P   D +    L   
Sbjct: 329 SERDGDTPGRATRRARGPAKVAQCRVCGRGLQGGAERKIGRCSTCPATYDEDLLERLRTW 388

Query: 761 TIDTKGKTNLES 772
                 +  L +
Sbjct: 389 RSARAKEQALPA 400


>gi|262202382|ref|YP_003273590.1| RecB family exonuclease-like protein [Gordonia bronchialis DSM
           43247]
 gi|262085729|gb|ACY21697.1| RecB family exonuclease-like protein [Gordonia bronchialis DSM
           43247]
          Length = 295

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 73/213 (34%), Gaps = 24/213 (11%)

Query: 751 INEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
              P  L+PS      +  L            +      RG ++H  L+ +F +P   R 
Sbjct: 28  PGRPLALSPSRAADFKQCPLLYRYRAIDRFAETPTPAQTRGTVVHAALENLFDMPAELRT 87

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS----------CDSYSEVSVS 852
                   + A     +   +L   +  + E+  +  A              ++   +V 
Sbjct: 88  QESADLLVEGAWGALCEADPDLARVVADVGESQFLADAHKLIATYYTMENPTAFEADAVE 147

Query: 853 GKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
             +    + + + G ID+I ++    + + +YKT     +  E      + Q+  Y   +
Sbjct: 148 HHVELESEQVRLRGFIDRIDVAPTGELRVVDYKTGRAPGEAFESRA---LFQMKFYALAI 204

Query: 912 KDSYPNKSLVCLLIYVSEPK--VFIIPQNKLNK 942
             +         L+Y+++ +   +   +++L +
Sbjct: 205 LRTRGVVPHRLQLMYLADGQQLTYTPDRDELER 237


>gi|229090183|ref|ZP_04221431.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-42]
 gi|228693119|gb|EEL46832.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-42]
          Length = 1171

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 74/765 (9%), Positives = 208/765 (27%), Gaps = 167/765 (21%)

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299  EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350  RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441  LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
            +K+ L               D+    C         +     +                 
Sbjct: 407  VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482  --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
              + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467  SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516  Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
            +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527  EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587  DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                       + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643  TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
             + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694  PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744  ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                        +  ++   +    + S ++   +         
Sbjct: 754  VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770  ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                 E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814  GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 873

Query: 809  CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
              +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874  LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864  -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       + GRID++  ++      + I +YK+      ++  + Y    Q+  Y 
Sbjct: 934  EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-SKSLDLTEVYYGLALQMLTYL 992

Query: 909  KIL---KDSYPNKSLVCL-----LIYVSEPKVFIIPQNKLNKAFA 945
             ++     ++  K          L +     +  +  +       
Sbjct: 993  DVVTSNAQTW-MKKGHAASPAGVLYFHIHNPIVEVKGDASEAEIE 1036


>gi|86153163|ref|ZP_01071368.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121613506|ref|YP_001001131.1| hypothetical protein CJJ81176_1475 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167006024|ref|ZP_02271782.1| hypothetical protein Cjejjejuni_07785 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85844048|gb|EAQ61258.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249581|gb|EAQ72540.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 788

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 69/532 (12%), Positives = 157/532 (29%), Gaps = 66/532 (12%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              I+   R       I+V+  D     + L + D   +     +    +S    L    
Sbjct: 252 MDEISHFVRKGLKPENIAVITPD-ESFCEFLRLFDKDNML----NFASGISIKESLFYQK 306

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F    +            E  +E  Q   +   +    +     E           ++F 
Sbjct: 307 FQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 366

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L          +     +  +  E   F     +N   +L+ELI  L     +     
Sbjct: 367 KLLALF-----LENEKQELIYLIRKELY-FIKDLLKNQSLTLKELI-HLFFMQISQLSLS 419

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V +M +  ++GL    V LVD   +    + + ++ +   +    G+  +  + 
Sbjct: 420 DVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRE 479

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             +                    R  Y  + + + ++ IC   N    K           
Sbjct: 480 NLQ--------------------RFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDF 519

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +   H  ++     L       +           ++ P E   +  +    +   +  + 
Sbjct: 520 FYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSRFNLLENQKRTYYY 579

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKN 803
               ++ EP +L+                 +++  N+G  IHK+L++             
Sbjct: 580 RYILNLAEPRVLS----------------EESKAKNQGNFIHKMLEIYYKNYANNDFDIK 623

Query: 804 FITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCP 858
              +   K  +       + +   L   +  +N       S     +++E+ ++  +   
Sbjct: 624 VFANLLDKEYQKYNISELDLEVFKLKFIQFAKNE--KEHFSKGFYVAHTELELNNILKLG 681

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              I + G ID+I  S++   I +YK+                 QL+ Y+ +
Sbjct: 682 TDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSY---------QLAFYQAL 724


>gi|47567600|ref|ZP_00238311.1| exonuclease RexB, putative [Bacillus cereus G9241]
 gi|47555795|gb|EAL14135.1| exonuclease RexB, putative [Bacillus cereus G9241]
          Length = 1171

 Score = 82.3 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFHGEASVAIRTAANLRAEVEGVAREIRRLVADE---------NYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|228932516|ref|ZP_04095397.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228827206|gb|EEM72959.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
          Length = 1166

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 73/765 (9%), Positives = 205/765 (26%), Gaps = 167/765 (21%)

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294  EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 344

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345  RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRY 401

Query: 441  LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
            +K+ L               D+    C         +     +                 
Sbjct: 402  VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482  --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
              + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 462  SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 521

Query: 516  Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANH 569
            +       +    +V + +   L+  +        SL      +              + 
Sbjct: 522  EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLDALQFANIPPSL 581

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 582  DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 637

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                       + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 638  TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
             + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689  PDVKDTFITNDVNDLSRLEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744  ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                        +  ++   +    + S ++   +         
Sbjct: 749  VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 808

Query: 770  ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                 E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809  GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 868

Query: 809  CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
              +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869  LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864  -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       + GRID++  ++      + I +YK+      ++  + Y    Q+  Y 
Sbjct: 929  EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-SKSLDLTEVYYGLALQMLTYL 987

Query: 909  KIL---KDSYPNKSLVCL-----LIYVSEPKVFIIPQNKLNKAFA 945
             ++     ++  K          L +     +  +  +       
Sbjct: 988  DVVTSNAQTW-MKKGHAASPAGVLYFHIHNPIVEVKGDASEAEIE 1031


>gi|148559179|ref|YP_001259903.1| double-strand break repair protein AddB [Brucella ovis ATCC 25840]
 gi|148370436|gb|ABQ60415.1| double-strand break repair protein AddB [Brucella ovis ATCC 25840]
          Length = 1052

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 79/672 (11%), Positives = 170/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +      ++ +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVVAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+     V+
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDVI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|237708925|ref|ZP_04539406.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456987|gb|EEO62708.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 555

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 88/286 (30%), Gaps = 39/286 (13%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              + F+D++  +  L  +      I   I     +I +DE QDT     + +  L    
Sbjct: 189 EGYMSFDDILYFSYILFSRFP---NIYKLIKARYPYIFVDEFQDTIPFVVDFLTQL---- 241

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                  +    +  VGD+ QSIY F GA  ++                      E+  +
Sbjct: 242 ------GNEGVIVGVVGDKAQSIYDFLGATVQQFDNF----------TVPGMQEYEIRGN 285

Query: 264 FRSTADILTVVDKV-------FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            RST  I+ +++ V       +                +      I + GT ++      
Sbjct: 286 KRSTKQIIDLLNIVRTDFSQDWLNGSERMIPELLVGDMLNCYQQSIEKCGTDEIQSLAFQ 345

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
              +    ++       + L  +  ++   + +   I  +I           R      +
Sbjct: 346 NILANSMRKKNGAREVENILEMDFDSNAGRQMV---IKALIKAVEYTRMNDLRNA-WHQL 401

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
            ++ R R  T +   L R L +        +   +   +  + DL 
Sbjct: 402 DIIDRDRSITIV---LLRRLLD--GYKDYKDGSLMDFYNFLVNDLH 442


>gi|229101823|ref|ZP_04232538.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-28]
 gi|228681616|gb|EEL35778.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-28]
          Length = 1166

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 74/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++ +     ++   ++       +A  I  ++  +T          + +DI VL+
Sbjct: 294 EARPNEKYYDEASVTISTAANLRAEVEGVAREIRRLVADET---------YRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKEMMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 462 IEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V +  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 582 DQVLVANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 639

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 640 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 --------------------FSPIKNDINEPYIL-------NPSTIDTKGKTN------- 769
                                   K        L       + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVIGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|168210475|ref|ZP_02636100.1| ATP-dependent nuclease, subunit B [Clostridium perfringens B str.
            ATCC 3626]
 gi|170711424|gb|EDT23606.1| ATP-dependent nuclease, subunit B [Clostridium perfringens B str.
            ATCC 3626]
          Length = 1158

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 82/708 (11%), Positives = 190/708 (26%), Gaps = 152/708 (21%)

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A  I  ++           +  + KDI V+ R   D      +   +  +Y+I    
Sbjct: 319  EFVAKDILRLVRE---------KQYRFKDISVICR---DVDNYEKVVSAIFAEYEIPYYI 366

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF-------------------- 446
            + +  +  +  I  + +    I       S    LK+ L                     
Sbjct: 367  DKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGVEGAELIDELENYVL 426

Query: 447  --NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS----- 499
                      +       +    E + +     + +   + + I   +            
Sbjct: 427  AYGIKGKKWMEEWVNYSSSILKEEEVSEENKQRLERLNDIRETIVTPLDEFNKQCKGKKT 486

Query: 500  -------PHDFFTLILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQ 541
                    ++F    L       +++  F             EV D+  + L   +    
Sbjct: 487  LKEFATILYEFLDSKLDIMDTIDKYVEYFKENDMAIEAKEYSEVRDIFIDVLEQAVDVLG 546

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            N   +L E +  L       +        ++V I  +   K   +  ++++     V   
Sbjct: 547  NEVMNLDEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVNDGVLPS 606

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               ++  +  +  +          S +R  I              E   L+Y   T A +
Sbjct: 607  ASKEEGILSDNDREILLEKGISLASDTRTKIF-------------EEQFLVYTAFTIAEE 653

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L++         K          +     N +   +     +   D+  A   + +   
Sbjct: 654  YLVVTYPLADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVNDKYDKISAKIPTLNELM 713

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------------------ 756
                +  +  +     + +        K      Y+                        
Sbjct: 714  IAIRKNYDGAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYED 773

Query: 757  ------LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ-------- 791
                  L+ S ++   +              +  + +    + G  +H++L         
Sbjct: 774  NKNKISLSVSRLERYAQCPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFTNEIKE 833

Query: 792  ---VIFTLPEHKRKNFITSYCTKNAK------LWPAKEYKNLLLSITRLLE------NPM 836
                   L +   +N I S      K      L  +K Y        R+L       +  
Sbjct: 834  KDLKWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQ 893

Query: 837  MTTAMSCDSYSEVSV-------SGKINCP-KKDIIISGRIDQIS---ISQQNIF-IFEYK 884
            M  +      +E++        S K++ P  +   ++GRID++    +  +    I +YK
Sbjct: 894  MKRSDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYK 953

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
            T      ++         QL +Y   L    ++   N+++   ++Y  
Sbjct: 954  TGSKKF-DLNKFYNGLQMQLLVYLDALINNSENIVENQAMPGAILYFR 1000


>gi|306843519|ref|ZP_07476120.1| double-strand break repair protein AddB [Brucella sp. BO1]
 gi|306276210|gb|EFM57910.1| double-strand break repair protein AddB [Brucella sp. BO1]
          Length = 1052

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVEVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGAR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|315652080|ref|ZP_07905081.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485727|gb|EFU76108.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 1128

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 109/898 (12%), Positives = 249/898 (27%), Gaps = 185/898 (20%)

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            D+L +  V++ +        + IL D     + IQ  ++ +L +     +         
Sbjct: 179 LDILNENIVNSELL-----RNSIILFDGYTGFTPIQNRIVSNLMKVADEVRF-------- 225

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
                   SI    G +P   L E  +                    F S+  IL  +++
Sbjct: 226 --------SITLGRGVDPDSRLSESDLF-------------------FVSSKMILQ-INE 257

Query: 277 VFS--IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +      +    ++ ++ +  R ++S                +     + +     +  D
Sbjct: 258 MAKKVNIKRLPDINLNTGSVYRFKNSNDLAFFEEHFLRYDGKKSKEVSDIEINYCMNPLD 317

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +             A  I +++         K +  + +DI ++     D   ++    
Sbjct: 318 EID----------FTANKILSLV---------KDKGYRYRDIAIIY---GDLEDVSDALI 355

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
              +  +I    +++  + ++  ++ + A    I       +    L+  L  F +  + 
Sbjct: 356 NRFHQLEIPYYLDEKMEVDNNELVEFINAFIAVISENFSYDALNRFLRLGLLRFDKRLVS 415

Query: 455 KICTQ------------RHETETVYEYIQKFANCGISKFQHVI----------------- 485
            +                 E   +     +     I++F+                    
Sbjct: 416 LLDNYLLETGIKGYKRLHSEFTYLPRSFGEDELKDINEFKDFALSKLDTLYSAISKSKIN 475

Query: 486 --KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV--IDVLDEF--LNFTLRN 539
               +  L  I +  +  +    I    + R  F      E    +V+  F  L   L  
Sbjct: 476 IKDALSALREIFEKENIEEKLQNIKPELEARNDFKRAREYEGIFDEVISLFDRLELVLEG 535

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E  +   L +L   L      IK     +  + V I  +   +      +F+        
Sbjct: 536 ESLTKKELSDL---LYTGFEEIKLGMIPDRVDRVVIGDLKRTRLGSIKALFVCGANDGSL 592

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                    I            +      R ++ +                 LY  +T+ 
Sbjct: 593 PTVKESGGLINDREKRKLKSLGFNLSDTVREDLYTG-------------RFYLYQVLTKP 639

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK------LTNSINKDEWIAY 712
           SD+L I         K   Q    +M+   F N E   + +              E +  
Sbjct: 640 SDKLFISFTGMDFEGKSLRQSILINMIKSIFVNIEIKNRKEANIYSKFEAKEYLSENLRK 699

Query: 713 EWSTHHPENTPLEREET----------IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
             +    +   +    T          I   M   K  K   S  +    +   ++ + +
Sbjct: 700 LRAKEVIDEEFIRYIATFFDKEFIKRLISAAMYVYKDSKIGESAARELFGDELRVSVTRL 759

Query: 763 DTKGKTNLESLL-----------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
           +       E  +              +  + G ++H +L+  F   + + K       + 
Sbjct: 760 ENYNACPFEHFIRYGLGVEERQIHSFKASDIGTLVHDMLEKCFRYAKSRDKKIAEMDESA 819

Query: 812 NAKLWPAKEYKNL-----------------LLSITRL--LENPMMTTAMSCDSYSEVSVS 852
              L      +N+                 L  I R+  L   +++  ++  ++      
Sbjct: 820 LFALVDEAVSENMASEKNSIFKESNKSKYQLEKIVRMTKLTMLVLSKQLAAGNFEPKYFE 879

Query: 853 GKINCPK------------KDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHI 896
                                + + G+ID++   + +      I +YKT  ++  E++  
Sbjct: 880 KSFGESDNLEALNIELKNNAKMYLRGKIDRVDTYVDEDATLVKIIDYKTG-NMKWELDMP 938

Query: 897 PYTHIAQLSIYEKILKDSY--PNKSL--VCLLIY-VSEPKVFIIPQNKLNKAFAEIST 949
            Y    QL IY   + +      K +       Y + EP +      K N   +++  
Sbjct: 939 FYGRALQLVIYLDAVMEQLTKEGKEVLPAAFFYYHIDEPFLTRDEAKKENAFLSKLKP 996


>gi|284036574|ref|YP_003386504.1| hypothetical protein Slin_1658 [Spirosoma linguale DSM 74]
 gi|283815867|gb|ADB37705.1| hypothetical protein Slin_1658 [Spirosoma linguale DSM 74]
          Length = 1039

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 57/533 (10%), Positives = 139/533 (26%), Gaps = 79/533 (14%)

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
            ++K+     +E D+ ++         ++              +     I  L  + +  
Sbjct: 434 EIVKNQRVYLTERDMLELGQDDPLVRVLFRRWPNEEPM--KAIRTFYDLIELLRDVYRTS 491

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVI----------------------DVLD--EFLN 534
                   +       +Q  +    +                         +LD    + 
Sbjct: 492 QDAIEIEYLYLFFTLLKQLEATLDRQGEGAQGAGRGVPVPKARNRGQGGTAILDTGAPVP 551

Query: 535 FTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               +E ++  +++ L   L E    T     S   ++++IM +   + L+   V ++  
Sbjct: 552 MLHVHEPSAAVTVRSLKQFLYELIRQTSIPFTSEGKSQLQIMGMLETRALDFDRVIILSV 611

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +          I   +  D  I +     +             + S           
Sbjct: 612 NEGILPQSRKLNSLIPFDIAADENIKLPTYSEQEAVMAYHFYRLLQRASEVV-------- 663

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                   L         N K    R    + ++       + +I              E
Sbjct: 664 -------LLYTTSTDAYGNSKGEPSRFIRQLEHELVPRSNGLVRISYPTV---RFGRTSE 713

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND-INEPYILNPSTIDTKGKTNLES 772
                     + + E+++  +    I K L+    N  ++       S I     +  E 
Sbjct: 714 KKETSLTELSVPKTESVRDGLINLLITKGLYPSYLNQFVSCSMRFYFSRIV--NISEEED 771

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTL----PEHKRKNFITSYCTKNAKLWPAKEYKN----- 823
           +         G  +HK+++ +            ++ I     +                 
Sbjct: 772 IEEKMGAAEFGSWLHKVMERLDLEYRLKALPIDESIIKMLLEEEFASTNKGRVIESGMNL 831

Query: 824 -LLLSITRLLENPMMTTAMSCDS---YSEVSVSGKINCPKKD-----IIISGRIDQISIS 874
            L     +L+ +               +E ++   +    +      + I+G++D+I   
Sbjct: 832 LLYDLAQKLMLDFQRQQNALPGLTVIGTEQTLETYLTVSIEGRGAVRVRIAGKVDRIERL 891

Query: 875 QQNIFIFEYKTHHH--VPQEIEHIPYTHI----------AQLSIYE-KILKDS 914
              I I +YKT       +  + +    +           QL +Y    LK+ 
Sbjct: 892 GDQIRIVDYKTGKVDLSEKTPKDLSDRLLNDGGDDAGKMRQLWLYRYLALKNI 944


>gi|315930995|gb|EFV09970.1| hypothetical protein CSU_1749 [Campylobacter jejuni subsp. jejuni
           327]
          Length = 788

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 69/532 (12%), Positives = 155/532 (29%), Gaps = 66/532 (12%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              I+   R       I V+  D     + L + D   +     +    +S    L    
Sbjct: 252 MDEISHFVRKGLKPENIVVITPD-ESFCEFLRLFDKDNML----NFASGISIKESLFYQK 306

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F    +            E  +E  Q   +   +    +     E           ++F 
Sbjct: 307 FQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 366

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L          +     V  +  E   F     +N   +L+EL   L     +     
Sbjct: 367 KLLALF-----LENEKQELVYLIRKELY-FIKDLLKNQSLTLKELT-HLFFMQISQLSLS 419

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V +M +  ++GL    V LVD   +    + + ++ +   +    G+  +  + 
Sbjct: 420 DVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRE 479

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             +                    R  Y  + + + ++ IC   N    K           
Sbjct: 480 NLQ--------------------RFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDF 519

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +   H  ++     L       +           ++ P E   +  +    +   +  + 
Sbjct: 520 FYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFALSFSRFNLLENQKRTYYY 579

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKN 803
               ++ EP +L+                 +++  N+G  IHK+L++             
Sbjct: 580 RYILNLAEPRVLS----------------EESKAKNQGNFIHKMLEIYYKNYANNDFDIK 623

Query: 804 FITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCP 858
              +   K  +       + +   L   +  +N       S     +++E+ ++  +   
Sbjct: 624 VFANLLDKEYQKYNISELDLEVFKLKFIQFAKNE--KEHFSKGFYVAHTELELNNILKLG 681

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              I + G ID+I  S++   I +YK+                 QL+ Y+ +
Sbjct: 682 TDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSY---------QLAFYQAL 724


>gi|296394679|ref|YP_003659563.1| RecB family exonuclease [Segniliparus rotundus DSM 44985]
 gi|296181826|gb|ADG98732.1| RecB family exonuclease [Segniliparus rotundus DSM 44985]
          Length = 294

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 57/215 (26%), Gaps = 30/215 (13%)

Query: 753 EPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
               L+PS      +  L                   RG ++H  L+ +  LP   R   
Sbjct: 12  RRLALSPSRASDFRQCPLLYRLRAIDRIPQPPTLAMVRGTLVHAALEELLALPAESRTLD 71

Query: 805 ITSYC-------------TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851
             +                 +           L      LL   M          +  + 
Sbjct: 72  AAAELIAPSWQRVSGEMPEDHRLDLDEHGLSQLFEQSKTLL--AMYFALEDPARVTPSAC 129

Query: 852 SGKINCPKK-DIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
             ++    + D+ + G +D++   +   + + +YKT        E      + Q+  Y  
Sbjct: 130 ELRVEVDLEPDVPLRGFVDRVDELADGELRVVDYKTGRAPGGPYEAKA---LFQMKFYAL 186

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVF--IIPQNKLNK 942
            L            L+Y+             +L++
Sbjct: 187 ALWKLRGVVPQELRLMYLGSGDTLTYEPDPGELDR 221


>gi|229154808|ref|ZP_04282923.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 4342]
 gi|228628756|gb|EEK85468.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 4342]
          Length = 1166

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFHGEASVTIRTAANLRAEVEGVAREIRRLVADE---------NYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 582 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 637

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 638 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|118380928|ref|XP_001023626.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89305393|gb|EAS03381.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1203

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 76/224 (33%), Gaps = 55/224 (24%)

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            KI  + +H   DE QD + IQ+ ++    ++             + A+GDE Q+IYSF 
Sbjct: 137 RKILNQYSHFFFDEFQDINDIQYNILMQFCKN----------NCKIIAIGDEAQNIYSFR 186

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            +  + + ++   + ++  N  QK  I  L ++FRS + I+   +++    +        
Sbjct: 187 NSRLEFIQKKIDDDVEKYQN--QKIHIYNLSINFRSQSKIIEFCNQILINIKK------- 237

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                 H+     Q    +    V      Q   +                       I 
Sbjct: 238 -----SHQMQSAKQSYQEEEKPIVKIYQSKQEQYET----------------------II 270

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
             I +++              Q  DI +L  + ++   I  +  
Sbjct: 271 EEIYDLVQK---------HKYQLSDIAILSPRNEEIKHIQAILE 305


>gi|229160193|ref|ZP_04288192.1| ATP-dependent nuclease, subunit B [Bacillus cereus R309803]
 gi|228623154|gb|EEK79981.1| ATP-dependent nuclease, subunit B [Bacillus cereus R309803]
          Length = 1171

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 69/719 (9%), Positives = 197/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFHGEASVTISTAANLRAEVEGVAREIRKLVANEQ---------YRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTSGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V +  +  ++       F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLVANIDHSRLSNVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDTIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSAKA-LDLTEVYYGLALQMLTY 991


>gi|157415706|ref|YP_001482962.1| hypothetical protein C8J_1387 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386670|gb|ABV52985.1| hypothetical protein C8J_1387 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307748347|gb|ADN91617.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 788

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 70/532 (13%), Positives = 156/532 (29%), Gaps = 66/532 (12%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              I+   R       I V+  D     + L + D   +     +    +S    L    
Sbjct: 252 MDEISHFVRKGLKPENIVVITPD-ESFCEFLRLFDKDNML----NFASGISIKESLFYQK 306

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F    +            E  +E  Q   +   +    +     E           ++F 
Sbjct: 307 FQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 366

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L          +     V  +  E   F     +N   +L+ELI  L     +     
Sbjct: 367 KLLALF-----LENEKQELVYLIRKELY-FIKDLLKNQSLTLKELI-HLFFMQISQLSLS 419

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V +M +  ++GL    V LVD   +    + + ++ +   +    G+  +  + 
Sbjct: 420 DVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRE 479

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             +                    R  Y  + + + ++ IC   N    K           
Sbjct: 480 NLQ--------------------RFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDF 519

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +   H  ++     L       +           ++ P E   +  +    +   +  + 
Sbjct: 520 FYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFALSFSRFNLLENQKRTYYY 579

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKN 803
               ++ EP +L+                 +++  N+G  IHK+L++             
Sbjct: 580 RYILNLAEPRVLS----------------EESKAKNQGNFIHKMLEIYYKNYANNDFDIK 623

Query: 804 FITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCP 858
              +   K  +       + +   L   +  +N       S     +++E+ ++  +   
Sbjct: 624 VFANLLDKEYQKYNISELDLEVFKLKFIQFAKNE--KEHFSKGFYVAHTELELNNILKLG 681

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              I + G ID+I  S++   I +YK+                 QL+ Y+ +
Sbjct: 682 TDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSY---------QLAFYQAL 724


>gi|306842787|ref|ZP_07475428.1| double-strand break repair protein AddB [Brucella sp. BO2]
 gi|306287060|gb|EFM58568.1| double-strand break repair protein AddB [Brucella sp. BO2]
          Length = 1052

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGAR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|260169509|ref|ZP_05756320.1| double-strand break repair protein AddB [Brucella sp. F5/99]
 gi|261759037|ref|ZP_06002746.1| double-strand break repair protein AddB [Brucella sp. F5/99]
 gi|261739021|gb|EEY27017.1| double-strand break repair protein AddB [Brucella sp. F5/99]
          Length = 1052

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 77/672 (11%), Positives = 167/672 (24%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDANDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     +   +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEVLENMARDETGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|20090714|ref|NP_616789.1| helicase [Methanosarcina acetivorans C2A]
 gi|19915768|gb|AAM05269.1| helicase [Methanosarcina acetivorans C2A]
          Length = 418

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 67/438 (15%), Positives = 122/438 (27%), Gaps = 103/438 (23%)

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            LL+K      I   I       LIDE QDTS +Q ++   L E+             L 
Sbjct: 3   KLLEKYPD---IAKAIVYRFPIFLIDEAQDTSDVQMKIFELLLENGLE---------RLM 50

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            +GD  Q+IY +  A P+   R++   +            + L  ++RS+ +I    DK+
Sbjct: 51  LIGDPNQAIYEWRTANPEVFTRKEIEWE-----------TLNLYENWRSSKEICAFTDKI 99

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            S                                    ++     N + E W    +   
Sbjct: 100 VS----------------------------TDYVSTACNEEIKDFNFKPEIWGYDVNKSL 131

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
              +  ++   I   I   I   +I       +++ KDIL  +R + D            
Sbjct: 132 NLETNRLIEEFIRICI---IKGISISKEKVAILVRGKDILTEIRNQGDFVRKE------- 181

Query: 398 NDYKISVVGNDRFILTDHLAIKDLM----ALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
                      R      + +  +     +  +++  ++D      +L+  +F       
Sbjct: 182 -----PWKEQIRNNGKQEMDVNRIHYRNISKSKYLFDKKDYKESFRLLEKTIFAI----- 231

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
                                     + +  I+ I             D    +      
Sbjct: 232 ----------------KNGKEYVSNDELKEFIEQIDF---KKWRIGLFDLLARLPSTDVS 272

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            ++++    NEVI     F       E        E+          I            
Sbjct: 273 LKEWV-DLANEVIRGDCFF--GISDFEIKIKKGTNEIKF------GQIFVDKEVETENYT 323

Query: 574 IMTVHTAKGLESPVVFLV 591
           + TVH+ KG     V L+
Sbjct: 324 LGTVHSVKGRTFEAVLLI 341


>gi|241761922|ref|ZP_04760007.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241373602|gb|EER63174.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 993

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/637 (9%), Positives = 166/637 (26%), Gaps = 68/637 (10%)

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             +++         P+N +          R+           + +  +     +    + 
Sbjct: 295 RKEVIEWDPPKNYHPDNREQAIRHVMAPARYTDRWRSLPEKERAFPNLSVIETAHPEEEA 354

Query: 327 E----SWTSYFDSLPQESSASILARRIAYTISNMIGT-DTIFSNGKKRVIQ--AKDILVL 379
           +    +     +   Q ++     R +A  +S ++        +   R +      +L+L
Sbjct: 355 QVIALALREAVEEKGQTAALVTPDRALAIRVSALLKRFGIDADDSAGRPLSLTPPGLLLL 414

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
                     + ++      + +   G DR +  DH+   D+                  
Sbjct: 415 DLVSLAADHFSAVSFLAIAKHPLVAFGEDRDLWRDHIRSLDM------------------ 456

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +L+ PL       +  I  +  E         +                 +   +     
Sbjct: 457 ILRGPLLRNG---LAGITAKIKEAVDHQTADPELLEWWEKTKIPFQALDQQFQTVLPLTK 513

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                        G + +    G+   D++ E  +    + ++   S    +   +    
Sbjct: 514 IVKILRETANQIAGEKIWAEAAGHLAADLIAEIESLAADHNEDMRFSDFAHVLR-QLMDK 572

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              R  +  H  + I  +  A+   + ++        V+         + P +  + G+P
Sbjct: 573 QAVRPMTGGHPRIFIWGLIEARLQHADLMIAASLNETVWPPIKEADPWLAPRIRSELGLP 632

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
               +     +  S ++   K            + +TRA                 +   
Sbjct: 633 GLELRIGIAAHDFSSVLGAKK------------ILLTRARR----------DARAPTMPS 670

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
            ++  +     N      +        +       +   P    L+R + I     +   
Sbjct: 671 RFWLRLEAMASNLHHADNLPYWARQLDEPQGFRPVTRPAPNPPVLDRPKRIAVTRFDSLQ 730

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                             +    +  G   L+ + ++     RG +IH +L+        
Sbjct: 731 SD--------------PYSYYASNILGLRKLDPVDAEPTAAWRGSLIHSILENWVKEDNS 776

Query: 800 KRKNFITSYCTKNAKLWPA-KEYKNLLLSITRLLENPMMT-TAMSCDSYSEVSVSGKINC 857
           +              +     +    L  + + ++         + +  + + V  +   
Sbjct: 777 RIGKLKPRALAFLESINAHIIQKTLWLPRLLQAIDWIEGEVQKNAAEGRTILDVEREGRS 836

Query: 858 PKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEI 893
               I + G +D+I      ++ I +YKT        
Sbjct: 837 QINGIELFGFVDRIDRMGDGSLAIVDYKTGTPPSAAA 873


>gi|182417614|ref|ZP_02948935.1| ATP-dependent nuclease subunit B [Clostridium butyricum 5521]
 gi|237669573|ref|ZP_04529553.1| ATP-dependent nuclease subunit B [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378533|gb|EDT76063.1| ATP-dependent nuclease subunit B [Clostridium butyricum 5521]
 gi|237655017|gb|EEP52577.1| ATP-dependent nuclease subunit B [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 1155

 Score = 81.9 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 106/969 (10%), Positives = 245/969 (25%), Gaps = 219/969 (22%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVL 147
           +   ++   +     ++    D     +                 +   + E   +   +
Sbjct: 116 QGFYEIVSDVISEFKKYNVEVDSLRNIEESIQESDLYNKIRELSIIYEAFNEEMNE-GYI 174

Query: 148 DFED-LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           D +D L +    LL+    +           + + IDE    +  Q E+IR L       
Sbjct: 175 DGDDELTLLGKKLLENDIYTN----------SEVWIDEFSTFTPQQLEIIRLLARRCK-- 222

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                              +      + +      +             + I        
Sbjct: 223 ------------------RVNITLCMDNRDNSNGNQDITDVFNTIKNTENKIL------- 257

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+   +  +  P N   ++ +        +  +     ++ +      +      + 
Sbjct: 258 --KIMKENNISYDKPINLNMINVNEGYNRFKNAPELEH---IEKYFFTYPFNSFNGKCEN 312

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                  +   +         R+A +I+ +I +            + KDI V+ R   D 
Sbjct: 313 VKLYKANNIYDEI-------ERVAKSITALIRSG---------KYRYKDISVVCRNIDDY 356

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             IT +      DY+I    + +  L ++  I  + +    +       S    LK+ L 
Sbjct: 357 EKITSVI---FKDYEIPYFLDKKLELLNNPLIILITSAFEILFKDWSYESVFKYLKTGLT 413

Query: 447 NFSEDDIFKICTQ------RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
               + I  +         +    TV E I +       +      +I E++   +    
Sbjct: 414 GIENNYIDVLENFVLEYGVKGYKWTVKEIISEIWFNNNEELSEEKIFISEIMDEVRR-PL 472

Query: 501 HDFFTLILGAKKG----RQQFISRFGNEVIDVLDE---------FLNFTLRNEQNSYSSL 547
             F   I G  K     +  +         + ++E           +      Q   S +
Sbjct: 473 LVFHNKIKGKHKVSHICKAIYEFLIDIHAFERINEWIEKFDEVGLEDKVKEYSQVEESVI 532

Query: 548 QELISELEQYPP------------------TIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
             L   ++                                ++V I  V   KG +   ++
Sbjct: 533 DILDQAVDVMGDKDLDSYDFFKILNSGFNNEEIGVIPVALDQVNIGDVARIKGRDVKALY 592

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +V     +      ++  +  +  +          S +RN +              E   
Sbjct: 593 IVGVNDGILPASKKEEGILSDNDRNILSEIGIELASNTRNKVF-------------EEQF 639

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           LLY  +T +SD L+I         K          +            ++ ++  +   +
Sbjct: 640 LLYTVLTISSDYLMISYPMADFEGKSLRPSIVISRIKKILPQL-----VEESDLYDLSSY 694

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------- 756
                    P  T  E    +++  DE+ + +      K   + P               
Sbjct: 695 KDKLNKVISPIPTFNELILAMRKNCDEENVEEYWREVYKWYKDSPEYENKVNNIFKGLDY 754

Query: 757 ------------------------LNPSTIDTKGKTNLESLLS-----------DNQTFN 781
                                    + S ++   +      +            +    +
Sbjct: 755 SNLKNHVNKNNLRELYANEDGKLMFSVSRLEKYAECPFSYFVQYGLKAKNRKIYEFTPPD 814

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------ 835
            G  +H +L +     + +   +      +   +        L      +L +       
Sbjct: 815 LGSFVHDILDLFTNRVKKEGILWSELNNERCKDIVSNLIDIRLSEQTNSILNSSKRFKYL 874

Query: 836 --MMTTAMSCDS--YSEV----SVSG---KINC--------------PKKDIIISGRIDQ 870
                  +S      +E            + +                 + + + GRID+
Sbjct: 875 SQRFKRVISKSVTVMAEQIGKGEFEVFKTEFDFGNYKTGEAVMLNLQDDEKVYLQGRIDR 934

Query: 871 I--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---------KDSYPN 917
           I        I+  I +YKT      ++  + Y    QL +Y   +         K   P 
Sbjct: 935 IDTLDLDGQIYIRIIDYKTGAKKF-DLNELYYGLQMQLLVYLDAIIKNSKYILEKQVIPG 993

Query: 918 KSLVCLLIY 926
                +L +
Sbjct: 994 ----AVLYF 998


>gi|229120764|ref|ZP_04250007.1| ATP-dependent nuclease, subunit B [Bacillus cereus 95/8201]
 gi|228662769|gb|EEL18366.1| ATP-dependent nuclease, subunit B [Bacillus cereus 95/8201]
          Length = 1166

 Score = 81.9 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 582 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 637

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 638 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|317012198|gb|ADU82806.1| hypothetical protein HPLT_01840 [Helicobacter pylori Lithuania75]
          Length = 785

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 56/512 (10%), Positives = 136/512 (26%), Gaps = 85/512 (16%)

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            + +  F    +         +           +  ++K + +L       S        
Sbjct: 279 ITPNADFLPFLKLLNQNNNLNFAMGLGAKNSPYYTELVKILEDLQTSDFNLSESAL---- 334

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIK 562
           L  +      + +  ++    L E  +  +       +     SL++L+    Q      
Sbjct: 335 LDLENITLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLKNYSLKDLLHLYLQEFEANF 394

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           R   ++  ++R+M     +G++   + +VD             + +  +L     +P  +
Sbjct: 395 RLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLFLNSALRKSLNLPTLL 454

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
            +   + +    L K+ K         L Y+                    +    +   
Sbjct: 455 DKKNLQKHYYYQLFKNSK------EITLSYI--------------------ESETSKASN 488

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            ++  + H +       L       ++   E     P++                 +   
Sbjct: 489 MLLELNLHTEPIKDAYTLFAPSPLKDYQEEEIKAAIPKDFSF----------SASSLNAF 538

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHKR 801
           L    +   +       S  D                   G ++H+LL +          
Sbjct: 539 LTCKRRFYYHYMKRFKESPKDESNS-------------AVGSLLHELLKEAYEKDKNPYA 585

Query: 802 KNFITSYCTKNAKLWPAKEYKN---LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
                 +  +  +    KE  +    L  I                  + + +       
Sbjct: 586 LEERLIWLLETRENITPKERLDTLVALKKIQAFYLKE--KERFKAKI-TILDLEKSFETI 642

Query: 859 KKDIIISGRIDQISIS-QQNIFIFEYK--TH------------HHVPQEIEHIPYTHIA- 902
            + ++  GRID+I  +    I + +YK  +                P EI  I   +   
Sbjct: 643 IQGVVFKGRIDRIDKTADNEIILLDYKFKSDLKLDNMSKTQREGLSPIEIAQISTDYQQI 702

Query: 903 ----QLSIYEKILKDSYPNKSLVCLLIYVSEP 930
               Q++IY   LK+    + +      + + 
Sbjct: 703 STDYQMAIYAFALKNLGYKEPIKAFFYDLRKG 734


>gi|206559582|ref|YP_002230343.1| putative helicase [Burkholderia cenocepacia J2315]
 gi|198035620|emb|CAR51507.1| putative helicase [Burkholderia cenocepacia J2315]
          Length = 934

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 20/188 (10%)

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
            + +R             L +   +     E  K +  +D++++I      L  R     
Sbjct: 544 TLVERLAEQSEPARARLFLQVVWPVAMAVNELLKADKCIDYDEMIRRALGYLHDRPDLLP 603

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                      IL DE QDT+  + ++IR +                 FAVGD+ Q+I  
Sbjct: 604 --------YRFILADEFQDTAPGRGDMIRKML--------HAREDSLFFAVGDDWQAINR 647

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
           F G++    LR  R                 L  +FRS   I  V         +    +
Sbjct: 648 FAGSD----LRFFREFGSMFNRRAAADKQCALTQTFRSNQGIADVGRTFVLRNGSQMPKT 703

Query: 289 EDSTTTIR 296
            ++    R
Sbjct: 704 VEAYDRTR 711


>gi|168217732|ref|ZP_02643357.1| ATP-dependent nuclease, subunit B [Clostridium perfringens NCTC 8239]
 gi|182380211|gb|EDT77690.1| ATP-dependent nuclease, subunit B [Clostridium perfringens NCTC 8239]
          Length = 1158

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 79/708 (11%), Positives = 194/708 (27%), Gaps = 152/708 (21%)

Query: 347  RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              +A  I  ++           +  + KDI V+ R   D      +   +  +Y+I    
Sbjct: 319  EFVAKDILRLVRE---------KQYRFKDISVICR---DVDNYEKVVSAIFAEYEIPYYI 366

Query: 407  NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL----FNFSEDDIFK-----IC 457
            + +  +  +  I  + +    I       S    LK+ L          ++       + 
Sbjct: 367  DKKIDIASNPLIVFINSAVDIISKNWTYESMFKYLKTGLIKEFRGIEGAELIDELENYVL 426

Query: 458  TQRHETETVYEYIQKFA------NCGISKFQHVIKYIHELIHIA---------------- 495
                + +   E    ++         + + +  ++ ++++                    
Sbjct: 427  AYGIKGKKWMEEWINYSSSILKEEEILEENKQRLERLNDIRETIVTPLDELNKQCKGKKT 486

Query: 496  ---QFCSPHDFFTLILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQ 541
                    ++F    L       +++  F             EV D+  + L   +    
Sbjct: 487  LKEFATILYEFLDSKLDVMDTIDKYVDYFKENDMAIEAKEYSEVRDIFIDVLEQAVDVLG 546

Query: 542  NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            N    L E +  L       +        ++V I  +   K   +  ++++     V   
Sbjct: 547  NEVMDLNEFMKVLNIGLSQYEMGLIPVALDQVNIGDITRIKSRGTKALYIIGVNDGVLPS 606

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               ++  +  +  +          S +R  I              E   L+Y   T A +
Sbjct: 607  ASKEEGILSDNDREILLEKGISLASDTRTKIF-------------EEQFLVYTAFTIAEE 653

Query: 661  QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             L++         K          +     N +   +         ++  A   + +   
Sbjct: 654  YLVVTYPLADFEGKSQRPSIIVHRLKKILPNVKEESEGFKLVDDKYEKISAKLPTLNELM 713

Query: 721  NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------------------ 756
                +  +  +     + +        K      Y+                        
Sbjct: 714  IAIRKNYDGAEIEDYWKYVYDWYLREPKWKERIEYVRKGLEYTNLENNISKEKAKKLYED 773

Query: 757  ------LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ-------- 791
                  L+ S ++   +              +  + +    + G  +H++L         
Sbjct: 774  NKNKISLSVSRLERYAQCPFAYYIQYGLKAKDRKIYEFTAPDLGSFMHEILDEFTNEIKE 833

Query: 792  ---VIFTLPEHKRKNFITSYCTKNAK------LWPAKEYKNLLLSITRLLE------NPM 836
                   L +   +N I S      K      L  +K Y        R+L       +  
Sbjct: 834  KDLKWSDLSKENCRNIINSLVDNQVKNNKSSILNSSKRYSYFTDRFKRILTKSVMVISEQ 893

Query: 837  MTTAMSCDSYSEVSV-------SGKINCP-KKDIIISGRIDQIS---ISQQNIF-IFEYK 884
            M  +      +E++        S K++ P  +   ++GRID++    +  +    I +YK
Sbjct: 894  MKRSDFEIYKNELAFGFSKDVNSIKLDLPSGESFYLNGRIDRVDKLNLDGETYLRIIDYK 953

Query: 885  THHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
            T      ++         QL +Y   +    ++   N+++   ++Y  
Sbjct: 954  TGSKKF-DLNKFYNGLQMQLLVYLDAIINNSENIIENQAMPGAILYFR 1000


>gi|228984310|ref|ZP_04144491.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775427|gb|EEM23812.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 1166

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFHGEASVTIRTAANLRAEVEGVAREIRRLVADE---------NYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWISEDPWMYRRYRSLDDTNGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 582 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 637

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 638 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|152981969|ref|YP_001352314.1| hypothetical protein mma_0624 [Janthinobacterium sp. Marseille]
 gi|151282046|gb|ABR90456.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 892

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 72/613 (11%), Positives = 163/613 (26%), Gaps = 75/613 (12%)

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
           D          T    SL    +    A+  A TI + +                  I +
Sbjct: 259 DDVVPADLPLATPPGLSLYAAHNLEAEAKAGAQTIMDWLQQGKTN------------IAI 306

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           +        ++    R L    ++ V     + L+   A   L +    + ++ + ++ +
Sbjct: 307 V----AQDRVVARRIRALLERAQVIVADETGWKLSTTRAAAALASWLELVAARAETIALL 362

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEY--IQKFANCGISKFQHVIKYIHELIHIAQ 496
             LKSP    + D+   +                 +     ++        +  L   A 
Sbjct: 363 DFLKSPFVFANTDNKADLVMASELALRRANVLGGWELVGDALTVIPAAQNMVKLLAQQAT 422

Query: 497 -FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN-----SYSSLQEL 550
            F         I  +++       R   +      + L      EQ+        S  E 
Sbjct: 423 GFSKGKTLCDWITASQQTLDALGMRGALQADGAGAQVLQLLQDIEQDCTAVGHVFSFAEW 482

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
            + L                 V ++ ++ A+      V LV   ++    +  + +    
Sbjct: 483 RAFLNLQLEATAYVQLNRDRRVVMLPLNGARLRSFDAVLLVGADAEHLPSQPTETLFFAN 542

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
            +  + G+                  +  ++    +   LL      A+++ ++      
Sbjct: 543 VVRRELGL---------------ATRESRQRQQLRDVTELL------AANEQVLMSWQAH 581

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            N + +    W + +  S       K  +    I          +   P    L   +  
Sbjct: 582 KNGEPNPVSPWIERLELSLARAGLPKIARHHVGIAPRHLTPVPLTMPAPHAAALRPHKLS 641

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                       +  P +        L+           L+ L    +  + G  +H++L
Sbjct: 642 ASG-----YNSLVACPYQFFATRMLGLS----------GLDELSDMPEKRDYGDWLHQIL 686

Query: 791 Q----VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-- 844
                 +  +    R   +     +   L   K    L          P     ++    
Sbjct: 687 AIFHTRLHEVTLAGRATLLREISDQVFGLALDKSAAALGYYARWQKAMPAYLEWLAEREA 746

Query: 845 -----SYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYK-THHHVPQEIEHIP 897
                   E      +     +II+ GR+D++  +      + +YK T+    ++     
Sbjct: 747 QGWHFVLGEEKFEKILRWDDGEIILHGRVDRMDENATGERAVLDYKSTNQSALRDKLKQG 806

Query: 898 YTHIAQLSIYEKI 910
             H  QL  Y  +
Sbjct: 807 EDH--QLPFYGLL 817


>gi|152991781|ref|YP_001357502.1| hypothetical protein SUN_0185 [Sulfurovum sp. NBC37-1]
 gi|151423642|dbj|BAF71145.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 776

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/467 (11%), Positives = 124/467 (26%), Gaps = 64/467 (13%)

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
           +I          ++   + +   I ++  + + I  +   AQ            G  +  
Sbjct: 300 RIYRSLDALYRYWQRHDRESVSLIERYGLLKEKIDSVSKTAQTG-----VENFFGFLEEI 354

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
               +     V +    FL             L   +  L +              +V +
Sbjct: 355 DLLDAEKQERVEEKYRHFLTLFRDETLTYKEWLFLWLKTLSKITLD-----DVRGGKVTV 409

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           + V   +G+    V +VD           K M +  ++    G+P    +   +    + 
Sbjct: 410 LGVLETRGVSFKGVVIVDFNEGTVPASSSKDMFLNSTVRTFAGLPTRQDREALQKQYYNR 469

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
           L++  +                              S+ + +    +   +        +
Sbjct: 470 LLQQAE------------------------SAAIIYSSSESNLPSKFLYELGLGKAERPK 505

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
           V    L           +       E   +E  +   Q     ++   L    K      
Sbjct: 506 VPLSLLYG---------HPSQLKAEEAPVVEAFDATAQTWSASRLKTWLECKRKYYYRYI 556

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCTKN 812
             +     D   +               G  +H LL+ +          K          
Sbjct: 557 KNIKAKEEDELNE---------------GAFLHTLLEQLYKEQDSYASEKELTKRLHALM 601

Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV---SGKINCPKKDIIISGRID 869
            +L   ++ KN    +    +             +E  V     ++      +   GRID
Sbjct: 602 DELLLEEDAKNRYRKLLWREKLKGFVKKEIDHFKAEWRVVERELEVVGEIGGLKFKGRID 661

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHI-AQLSIYEKILKDSY 915
           +I  +  +  + +YK+     +  +  P      Q+SIY ++L++ Y
Sbjct: 662 RIDQNATDTLVLDYKSGRVEKEPKKLNPEKISDFQMSIYRQLLQNRY 708


>gi|148548360|ref|YP_001268462.1| UvrD/REP helicase [Pseudomonas putida F1]
 gi|148512418|gb|ABQ79278.1| UvrD/REP helicase [Pseudomonas putida F1]
          Length = 834

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 73/269 (27%), Gaps = 24/269 (8%)

Query: 47  LKKAQTLQQASQTQCIEERFSL-LSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKK 102
                          +  R +  L+   +       K    +    +          ++ 
Sbjct: 412 QAFCDRPLIWLDNYAMARRLAASLAGDAVAGPGFEYKVKGELAPAPLLDAFVSAANFIEN 471

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLL 160
              E  K      ++    S               E         V+ +         L 
Sbjct: 472 LGLEVNKAVAAM-SFPSGDSDALFFEALALYWKALEAHLLDQSPPVMSYN----RMFALF 526

Query: 161 --KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS-LTE----DFFVGKNTHSSP 213
                +    +   + + + H++IDE QD S      +R+ L E       +    H+  
Sbjct: 527 GENNPENLHLLPDPLLRPLAHLMIDEFQDVSPQIVSWLRASLAEIRRRGPAMHTGRHAQH 586

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
            +L  VGD+ QSIY + G+ PK  +   +             + + L  ++R    ++  
Sbjct: 587 SSLLCVGDDWQSIYGWRGSSPKYFMEFTKAFP------SPANTRVMLIDNYRCQQQVIDA 640

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
            + +        G    ++          
Sbjct: 641 AEHLVKGTPAIAGKKARASGPAAELPGSP 669


>gi|167010689|ref|ZP_02275620.1| UvrD/REP helicase [Francisella tularensis subsp. holarctica FSC200]
 gi|254367768|ref|ZP_04983789.1| DNA and RNA helicases Superfamily I protein [Francisella tularensis
           subsp. holarctica 257]
 gi|134253579|gb|EBA52673.1| DNA and RNA helicases Superfamily I protein [Francisella tularensis
           subsp. holarctica 257]
          Length = 215

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 22/136 (16%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +I     L +K         ++    +HI+IDE QD + +Q  ++R L            
Sbjct: 1   MIYLPAKLFEKD---KNSVTQVSSLYSHIIIDEYQDINQVQQFLLRCLVG---------- 47

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLR-EKRINQKRATNAGQKFSIIELPLSFRSTADI 270
               + AVGD  Q+IY +  + P  +L   K+          +      L  +FR    I
Sbjct: 48  RTTYVMAVGDVDQTIYQWRSSTPYYMLEGFKKDF--------KGVEQYTLSYTFRYGDLI 99

Query: 271 LTVVDKVFSIPENAQG 286
             + + +    +    
Sbjct: 100 SLMANNIIVNNKKRHN 115


>gi|17988307|ref|NP_540941.1| putative cytoplasmic protein [Brucella melitensis bv. 1 str. 16M]
 gi|256045705|ref|ZP_05448583.1| putative cytoplasmic protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112425|ref|ZP_05453346.1| putative cytoplasmic protein [Brucella melitensis bv. 3 str. Ether]
 gi|260563007|ref|ZP_05833493.1| double-strand break repair protein AddB [Brucella melitensis bv. 1
           str. 16M]
 gi|265992126|ref|ZP_06104683.1| double-strand break repair protein AddB [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993863|ref|ZP_06106420.1| double-strand break repair protein AddB [Brucella melitensis bv. 3
           str. Ether]
 gi|17984080|gb|AAL53205.1| hypothetical cytosolic protein [Brucella melitensis bv. 1 str. 16M]
 gi|260153023|gb|EEW88115.1| double-strand break repair protein AddB [Brucella melitensis bv. 1
           str. 16M]
 gi|262764844|gb|EEZ10765.1| double-strand break repair protein AddB [Brucella melitensis bv. 3
           str. Ether]
 gi|263003192|gb|EEZ15485.1| double-strand break repair protein AddB [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 1052

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|62290944|ref|YP_222737.1| hypothetical protein BruAb1_2077 [Brucella abortus bv. 1 str.
           9-941]
 gi|82700855|ref|YP_415429.1| hypothetical protein BAB1_2104 [Brucella melitensis biovar Abortus
           2308]
 gi|189025156|ref|YP_001935924.1| hypothetical protein BAbS19_I19680 [Brucella abortus S19]
 gi|254690235|ref|ZP_05153489.1| hypothetical protein Babob68_08702 [Brucella abortus bv. 6 str.
           870]
 gi|254696351|ref|ZP_05158179.1| hypothetical protein Babob28_01193 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731266|ref|ZP_05189844.1| hypothetical protein Babob42_08720 [Brucella abortus bv. 4 str.
           292]
 gi|256258488|ref|ZP_05464024.1| hypothetical protein Babob9C_14307 [Brucella abortus bv. 9 str.
           C68]
 gi|260546207|ref|ZP_05821947.1| double-strand break repair protein AddB [Brucella abortus NCTC
           8038]
 gi|260755776|ref|ZP_05868124.1| double-strand break repair protein AddB [Brucella abortus bv. 6
           str. 870]
 gi|260758999|ref|ZP_05871347.1| double-strand break repair protein AddB [Brucella abortus bv. 4
           str. 292]
 gi|260760723|ref|ZP_05873066.1| double-strand break repair protein AddB [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884800|ref|ZP_05896414.1| double-strand break repair protein AddB [Brucella abortus bv. 9
           str. C68]
 gi|297247329|ref|ZP_06931047.1| double-strand break repair protein AddB [Brucella abortus bv. 5
           str. B3196]
 gi|62197076|gb|AAX75376.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616956|emb|CAJ12060.1| conserved hypothetical protein [Brucella melitensis biovar Abortus
           2308]
 gi|189020728|gb|ACD73450.1| hypothetical protein BAbS19_I19680 [Brucella abortus S19]
 gi|260096314|gb|EEW80190.1| double-strand break repair protein AddB [Brucella abortus NCTC
           8038]
 gi|260669317|gb|EEX56257.1| double-strand break repair protein AddB [Brucella abortus bv. 4
           str. 292]
 gi|260671155|gb|EEX57976.1| double-strand break repair protein AddB [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675884|gb|EEX62705.1| double-strand break repair protein AddB [Brucella abortus bv. 6
           str. 870]
 gi|260874328|gb|EEX81397.1| double-strand break repair protein AddB [Brucella abortus bv. 9
           str. C68]
 gi|297174498|gb|EFH33845.1| double-strand break repair protein AddB [Brucella abortus bv. 5
           str. B3196]
          Length = 1052

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|240171393|ref|ZP_04750052.1| hypothetical protein MkanA1_18921 [Mycobacterium kansasii ATCC
           12478]
          Length = 289

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 72/217 (33%), Gaps = 31/217 (14%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
            + D+     L+PS      +  L            + +    RG ++H  L+ ++ LP 
Sbjct: 7   PEADLRIRPALSPSRATDFKQCPLLYRFRAIDRLPEAPSAPQLRGSVVHAALEQLYALPA 66

Query: 799 HKR---------KNFITSYCTKNAKLWPAKEYKNLLLSITRLL------ENPMMTTAMSC 843
            +R         +            L    + + LL     LL      E+P        
Sbjct: 67  VQRGPETARSLVEAAWEQVIAGEPALADELQPQALLDEARALLSGYYRLEDPT---RFDP 123

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIA 902
               E  V  ++       ++ G ID+I ++    + + +YKT    P       +  + 
Sbjct: 124 QC-CEHRVEVELA---DGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKALF 179

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
           Q+  Y   L  S         LIY+++ +V     ++
Sbjct: 180 QMKFYGVALFRSRGVLPTRLRLIYLADSQVLDYSPDR 216


>gi|325676838|ref|ZP_08156511.1| RecB family exonuclease [Rhodococcus equi ATCC 33707]
 gi|325552386|gb|EGD22075.1| RecB family exonuclease [Rhodococcus equi ATCC 33707]
          Length = 301

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 81/251 (32%), Gaps = 42/251 (16%)

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTF 780
           T    M             ++       L+PS      +  L            + ++  
Sbjct: 2   TTSVPMHPAPATDGAGRADESGRPRRLALSPSRAGDFKQCPLLYRFRAIDRLPETPSKAQ 61

Query: 781 NRGLIIHKLLQVIFTLPEHKR---------KNFITSYCT---KNAKLWPAKEYKNLLLSI 828
            +G ++H  L+ +F LP  +R         +           + A+L    +    L   
Sbjct: 62  VKGTVVHAALEALFALPAGERVADRAKELVEPAWDRVLADSPELAELIGPADRGQFLTDA 121

Query: 829 TRL------LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IF 881
            RL      LE+P        ++  E+ V  ++      +++ G +D++ +S   +  + 
Sbjct: 122 RRLIANYYRLEDPT---RFDPEA-CELRVETEL---DDGVLLRGFVDRVDVSPTGLVRVV 174

Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF---IIPQN 938
           +YKT        E      + Q+  Y  +L  +         L+Y+ + +      +   
Sbjct: 175 DYKTGRAP---WELSESKALFQMKFYALVLLRTRGVVPARLQLLYLGDGQTLTYDPVEDE 231

Query: 939 KL--NKAFAEI 947
            L   +  + I
Sbjct: 232 LLRFERTLSAI 242


>gi|254758684|ref|ZP_05210711.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Australia
            94]
          Length = 1171

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 74/764 (9%), Positives = 209/764 (27%), Gaps = 165/764 (21%)

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299  EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350  RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441  LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
            +K+ L               D+    C         +     +                 
Sbjct: 407  VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482  --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
              + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467  SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516  Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
            +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527  EENGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587  DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                       + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643  TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
             + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694  PDVKDTFITNDVNDLSRLEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744  ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                        +  ++   +    + S ++   +         
Sbjct: 754  VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770  ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                 E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814  GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 873

Query: 809  CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
              +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874  LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864  -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       + GRID++  ++      + I +YK+      ++  + Y    Q+  Y 
Sbjct: 934  EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTYL 992

Query: 909  KIL---KDSYPNKSLVC----LLIYVSEPKVFIIPQNKLNKAFA 945
             ++     ++  K        +L +     +  +  +       
Sbjct: 993  DVVTSNAQTWMKKGGTASPAGVLYFHIHNPIVEVKGDASEAEIE 1036


>gi|30261248|ref|NP_843625.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Ames]
 gi|47526410|ref|YP_017759.1| ATP-dependent nuclease subunit B [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49184080|ref|YP_027332.1| ATP-dependent nuclease subunit B [Bacillus anthracis str. Sterne]
 gi|65318519|ref|ZP_00391478.1| COG3857: ATP-dependent nuclease, subunit B [Bacillus anthracis str.
            A2012]
 gi|165873105|ref|ZP_02217723.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0488]
 gi|167635422|ref|ZP_02393736.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0442]
 gi|167640181|ref|ZP_02398447.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0193]
 gi|170688092|ref|ZP_02879304.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0465]
 gi|170707684|ref|ZP_02898136.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0389]
 gi|177655490|ref|ZP_02936933.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0174]
 gi|190566641|ref|ZP_03019558.1| ATP-dependent nuclease, subunit B [Bacillus anthracis Tsiankovskii-I]
 gi|227816014|ref|YP_002816023.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. CDC 684]
 gi|229600115|ref|YP_002865671.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0248]
 gi|254682691|ref|ZP_05146552.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str.
            CNEVA-9066]
 gi|254725484|ref|ZP_05187266.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A1055]
 gi|254734109|ref|ZP_05191822.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Western
            North America USA6153]
 gi|254740247|ref|ZP_05197939.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Kruger B]
 gi|254753587|ref|ZP_05205623.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Vollum]
 gi|81583097|sp|Q81TW2|ADDB_BACAN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|30254862|gb|AAP25111.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Ames]
 gi|47501558|gb|AAT30234.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49178007|gb|AAT53383.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. Sterne]
 gi|164711159|gb|EDR16718.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0488]
 gi|167511782|gb|EDR87162.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0193]
 gi|167529250|gb|EDR92003.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0442]
 gi|170127459|gb|EDS96334.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0389]
 gi|170667987|gb|EDT18738.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0465]
 gi|172080089|gb|EDT65185.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0174]
 gi|190562193|gb|EDV16161.1| ATP-dependent nuclease, subunit B [Bacillus anthracis Tsiankovskii-I]
 gi|227004849|gb|ACP14592.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. CDC 684]
 gi|229264523|gb|ACQ46160.1| ATP-dependent nuclease, subunit B [Bacillus anthracis str. A0248]
          Length = 1171

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 74/764 (9%), Positives = 209/764 (27%), Gaps = 165/764 (21%)

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299  EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350  RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441  LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
            +K+ L               D+    C         +     +                 
Sbjct: 407  VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482  --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
              + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467  SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516  Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
            +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527  EENGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570  NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587  DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630  NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                       + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643  TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690  HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
             + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694  PDVKDTFITNDVNDLSRLEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744  ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                        +  ++   +    + S ++   +         
Sbjct: 754  VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770  ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                 E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814  GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 873

Query: 809  CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
              +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874  LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864  -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
                       + GRID++  ++      + I +YK+      ++  + Y    Q+  Y 
Sbjct: 934  EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTYL 992

Query: 909  KIL---KDSYPNKSLVC----LLIYVSEPKVFIIPQNKLNKAFA 945
             ++     ++  K        +L +     +  +  +       
Sbjct: 993  DVVTSNAQTWMKKGGTASPAGVLYFHIHNPIVEVKGDASEAEIE 1036


>gi|88596293|ref|ZP_01099530.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88191134|gb|EAQ95106.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 788

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 69/532 (12%), Positives = 160/532 (30%), Gaps = 66/532 (12%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              I+   R       I+V+  D     + L + D   +     +    +S    L    
Sbjct: 252 MDEISHFVRKGLKPENIAVITPD-ESFCEFLRLFDKDNML----NFASGISIKESLFYQK 306

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F    +            E  +E  Q   +   +    +     E           ++F 
Sbjct: 307 FQALYESASSASFIYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 366

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L          +     +  +  E   F     +N   +L+ELI  L     +     
Sbjct: 367 KLLALF-----LENEKQELIYLIRKELY-FIKDLLKNQSLTLKELI-HLFFMQISQLSLS 419

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V +M +  ++GL    V LVD   +    + + ++ +   +    G+  +  + 
Sbjct: 420 DVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRE 479

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             +                    R  Y  + + + ++ IC   N    K           
Sbjct: 480 NLQ--------------------RFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDF 519

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +   H  ++     L       +           ++ P E   +  +    +   +  + 
Sbjct: 520 FYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSRFNLLENQKRTYYY 579

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN-- 803
               ++ EP +L+                 +++  N+G  IHK+L++ +    +   +  
Sbjct: 580 RYILNLAEPRVLS----------------EESKAKNQGNFIHKMLEIYYKNYANNNFDIK 623

Query: 804 FITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCP 858
              +   K  +       + +   L   +  +N       S     +++E+ ++  +   
Sbjct: 624 VFANLLDKEYQKYNISELDLEVFKLKFIQFAKNE--KEHFSKGFYVAHTELELNNILKLG 681

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              I + G ID+I  S++   I +YK+                 QL+ Y+ +
Sbjct: 682 TDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSY---------QLAFYQAL 724


>gi|323141944|ref|ZP_08076801.1| conserved domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413579|gb|EFY04441.1| conserved domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 1069

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 76/658 (11%), Positives = 151/658 (22%), Gaps = 99/658 (15%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
           +S     R +   I   +  +            A  I+V VR       +    R L ++
Sbjct: 323 ASDEQEMRWVLKRIKQQLAHE---------KCAANRIVVAVRDFS----LYSGLRQLADE 369

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
           Y + V       L        L  L        +  +    L S        D+      
Sbjct: 370 YGVPVSLPQTTALVAQPLAVMLRLLLTAAGRGREAAAAYLELLSCELLRLFFDVDVETAS 429

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ--- 516
              T+T ++  Q+             +   +L    +        +          Q   
Sbjct: 430 SLRTQTYFKTRQEAMQKAHELLGDATELWQQLDAFIETTKAEAAISEYAEQLTQLVQSLP 489

Query: 517 FISRFG----------------NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
              R G                     VL          E    S  +  +S+       
Sbjct: 490 LEERLGSLHKQGVPLDFMLACLRSKDAVLKAVQQLVRDYEVAKNSDYKLTLSQWNSLLQE 549

Query: 561 IKRAHS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL--- 612
                         + V    V   +GL    V+++      F     +      +    
Sbjct: 550 ALGQVQLTLRFGRRDGVLFTEVGNVQGLSFDSVYIMGLREGEFPQAKNENWIYNDTERKQ 609

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK-----H 667
             D G  +    S    +             +        VG + AS  L          
Sbjct: 610 LADAGYDLPTVGSSFDEDAYFFAQAVCAAQKELILTWHEDVGESLASSYLEEIWKLFLQP 669

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
            +       +      +      + E     K   + +  +               L  +
Sbjct: 670 GSEDKRLDKDYVKAQTLPDFGVASAEEAYSDKRFAAADLPKIAELSGQKAPSAEQQLAAK 729

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEP---YILNPSTIDTKGKTNLESLLSD-------- 776
             I +   + +    L + +   +         + S ++         L           
Sbjct: 730 ADILRKAQQPEYNGDLQNSLPTKLLRKQIGSRFSASRLEAYAACPFRFLAEKVWLAQAAE 789

Query: 777 -----NQTFNRGLIIHKLL--------------QVIFTLPEHKR---KNFITSYCTKNA- 813
                 Q  + G I+H+ L              + +  L E      ++  T+       
Sbjct: 790 EADDLLQPRDAGDILHQTLKSFVEPYLGSKIIGETMADLTEELEAVFEDVCTAALNDGGS 849

Query: 814 ------KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK------- 860
                 +     E + L   + R L             +   +V    +           
Sbjct: 850 TVASVNEDIWQVEKQRLWRMLVRWLR-FEYADQQRWGGFRPQAVEWNFSSKNGKPLYLTL 908

Query: 861 ----DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
               D+ + GR+D+I    ++ FI +YK+                 QL +Y   +   
Sbjct: 909 SDGSDVSLIGRVDRIDSDGEHAFITDYKSGTPPTGSAME--QGLDLQLPVYLLAVAAL 964


>gi|228913816|ref|ZP_04077441.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845755|gb|EEM90781.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 1171

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 71/697 (10%), Positives = 190/697 (27%), Gaps = 158/697 (22%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +A  I  ++  +           + +DI VL+R          + R L  DY I
Sbjct: 321 RAEVEGVAREIRRLVAEE---------NYRYRDIAVLLRN---GESYYDVMRTLFTDYNI 368

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF----------SEDD 452
               +++  ++ H  ++ + +    I       +    +K+ L               D+
Sbjct: 369 PHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRCVKTELLYPLDVRKETMREEMDE 428

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKF-----------QHVIKYIHELIH-------- 493
               C         +     +                   + + + I+ L          
Sbjct: 429 FENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITDSEREMEEKINRLRDVVRTPVIR 488

Query: 494 -----------IAQFCSPHDFFTLI-----LGAKKGRQQ-----FISRFGNEVIDVLDEF 532
                      +    + + F   +     L A + R +       +    +V + +   
Sbjct: 489 MQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSL 548

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
           L+  +        SL      +      ++ A+     ++V I  +  ++       F++
Sbjct: 549 LDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVI 608

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                V              L+D+    +     +              + T  E   ++
Sbjct: 609 GVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAPTT---------RQTLLEEQFVM 655

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           Y  +TRA+++L I         K     ++   +   F + +        N +++ E I+
Sbjct: 656 YQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQIS 715

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKL---------------------------- 743
           Y  +     +  +++ +T K+   E  +                                
Sbjct: 716 YVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNR 775

Query: 744 -----FSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIH 787
                 +  ++   +    + S ++   +              E  +      + G + H
Sbjct: 776 AQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFH 835

Query: 788 KLLQVIFTLPEHKRKNFIT-----------------SYCTKNAKLWPAKEYKNLLLSITR 830
             L+ I      + + +                   +   +   L  +  +  L   + +
Sbjct: 836 AALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAPLLQRQILLSSNRHFYLKQKLQQ 895

Query: 831 LL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--------------ISGRIDQISIS 874
           ++   + ++        +  V +           +              + GRID++  +
Sbjct: 896 IIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKA 955

Query: 875 QQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           +      + I +YK+      ++  + Y    Q+  Y
Sbjct: 956 EDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|86149363|ref|ZP_01067594.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85840145|gb|EAQ57403.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|284926689|gb|ADC29041.1| hypothetical protein CJSA_1405 [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 788

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 69/532 (12%), Positives = 160/532 (30%), Gaps = 66/532 (12%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              I+   R       I+V+  D     + L + D   +     +    +S    L    
Sbjct: 252 MDEISHFVRKGLKPENIAVITPD-ESFCEFLRLFDKDNML----NFASGISIKESLFYQK 306

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F    +            E  +E  Q   +   +    +     E           ++F 
Sbjct: 307 FQALYESASSASFIYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 366

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L          +     +  +  E   F     +N   +L+ELI  L     +     
Sbjct: 367 KLLALF-----LENEKQELIYLIRKELY-FIKDLLKNQSLTLKELI-HLFFMQISQLSLS 419

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V +M +  ++GL    V LVD   +    + + ++ +   +    G+  +  + 
Sbjct: 420 DVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRE 479

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             +                    R  Y  + + + ++ IC   N    K           
Sbjct: 480 NLQ--------------------RFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDF 519

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +   H  ++     L       +           ++ P E   +  +    +   +  + 
Sbjct: 520 FYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSRFNLLENQKRTYYY 579

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN-- 803
               ++ EP +L+                 +++  N+G  IHK+L++ +    +   +  
Sbjct: 580 RYILNLAEPRVLS----------------EESKAKNQGNFIHKMLEIYYKNYANNNFDIK 623

Query: 804 FITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCP 858
              +   K  +       + +   L   +  +N       S     +++E+ ++  +   
Sbjct: 624 VFANLLDKEYQKYNISELDLEVFKLKFIQFAKNE--KEHFSKGFYVAHTELELNNILKLG 681

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              I + G ID+I  S++   I +YK+                 QL+ Y+ +
Sbjct: 682 TDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSY---------QLAFYQAL 724


>gi|297571477|ref|YP_003697251.1| hypothetical protein Arch_0907 [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931824|gb|ADH92632.1| conserved hypothetical protein [Arcanobacterium haemolyticum DSM
           20595]
          Length = 283

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 71/212 (33%), Gaps = 33/212 (15%)

Query: 755 YILNPSTIDTKGKTNLESL--------LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
             L+PS +       L+             +    RG I+H +L+ ++ +P  +R   + 
Sbjct: 6   AALSPSRVSDFRSCPLKFRFRVIDRLTEPPSLEALRGTIVHSVLERLYDVPASERGEALA 65

Query: 807 S------YCTKNAKLWPAKEYKNLLLSITRLLEN--PMMTTAMS-------CDSYSEVSV 851
                  +     K     E      S T  LE+  P++++  +            E  V
Sbjct: 66  QESLENIWEQHAEKSPADAELFTDSESFTTWLESARPLISSYFTLENPQYLEPHGRERFV 125

Query: 852 SGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
           +  +      + I G ID++  +      I +YKT        +      I Q+  Y   
Sbjct: 126 NATLPS---GLAIRGIIDRLDKAPNGALRIVDYKTGKSPAPRFQDGA---IFQMRFYATA 179

Query: 911 LKDSYPNKSLVCLLIYVSEPKVF---IIPQNK 939
           L        L   L+Y+ + +V     +P + 
Sbjct: 180 LFYEEGTLPLRTQLLYLKDKRVLTYDPVPADV 211


>gi|255564990|ref|XP_002523488.1| conserved hypothetical protein [Ricinus communis]
 gi|223537316|gb|EEF38947.1| conserved hypothetical protein [Ricinus communis]
          Length = 1335

 Score = 81.5 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 58/398 (14%), Positives = 126/398 (31%), Gaps = 44/398 (11%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  KK+N   D  DL+I+ +  L+             ++++++ IDEVQD ++ 
Sbjct: 314 DIFLEYERTKKRNGEFDMFDLVIDLHHWLRDE-------TYEGEKMDYVYIDEVQDLTMR 366

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL---REKRINQKRA 248
           Q  + + + ++F  G             GD  Q+I    G + +                
Sbjct: 367 QISLFKYICKNFEEG---------FVVSGDTAQTI--VRGVDFRFEDIRALFYTEFLCER 415

Query: 249 TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
              G+   I  L  +FR+ A +L + + V  +  +    S D     +         G  
Sbjct: 416 KQKGKIADIFHLSQNFRTHAGVLKLANSVVELLYHFFPSSID-----QLIPQTNHVKGEQ 470

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN-GK 367
            +W   +   ++       S  S +     E +  +        I N++G   I     +
Sbjct: 471 PVW---IQTKENALGSLFRSSGSNYLEFGAEQAILVRDEIDKNKIFNLVGEKAIVLTVME 527

Query: 368 KRVIQAKDILV-----LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
            + ++ +D+L+              +I    +       +       F   D      L 
Sbjct: 528 CKGLEFQDVLLYNFFSSSPLNYQWDVIYGYMKE--QGLLVPPH-PKSFPTFDEGKHTALC 584

Query: 423 ALGR----FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN-CG 477
              +     I      L     + SP+FN+    +  +  +  + + + E     +    
Sbjct: 585 FELKQLYVAITRTRQRLWIFENVSSPVFNY-WLKLQLVHVRELDDKFLEEIQVTSSQEEW 643

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
            ++       ++       F    + +        G +
Sbjct: 644 KARGIKFFHQMNYDQARFCFERAGESYWEKWAVAAGHR 681


>gi|163939034|ref|YP_001643918.1| ATP-dependent nuclease subunit AddB [Bacillus weihenstephanensis
           KBAB4]
 gi|251764543|sp|A9VJ01|ADDB_BACWK RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|163861231|gb|ABY42290.1| ATP-dependent nuclease subunit AddB [Bacillus weihenstephanensis
           KBAB4]
          Length = 1171

 Score = 81.1 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 79/719 (10%), Positives = 199/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++ T+           + +DI VL+
Sbjct: 299 EARPNEKFHGEASVTISTAANLRAEVEGVAREIRRLVATE---------DYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDASEMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMTTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V +  +  ++  +    F++     V              L+D+    +     +   
Sbjct: 587 DQVLVANIDHSRLSDIKATFIIGVNEGVIPA----APMDEGMLSDEERNVLTAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E ++Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKESFITNDVNDLSRSEQLSYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 --------------------FSPIKNDINEPYIL-------NPSTIDTKGKTN------- 769
                                   K   +    L       + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTDVSRDLYGDTIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT---SYCTKNAKLWPAKEYK 822
                E  +      + G + H  L+ I      + + +       C   + L   +   
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADKLLRENRTWADLSIKECEHLSALVIEEIAP 873

Query: 823 NLLLSIT----------RLLENPMMTT--AMSCDSYS----EVSVSGKINCPKKDII--- 863
            L   I           + L+  +  T   +   + S     V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFALPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|229171885|ref|ZP_04299454.1| ATP-dependent nuclease, subunit B [Bacillus cereus MM3]
 gi|228611595|gb|EEK68848.1| ATP-dependent nuclease, subunit B [Bacillus cereus MM3]
          Length = 1171

 Score = 81.1 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 73/719 (10%), Positives = 197/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFHGEASVTISTAANLRAEVEGVAREIRRLVADE---------DYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTDEMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467 SEREMEERINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V     + +  +     D               
Sbjct: 587 DQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMDEGMLSDEERDVL------------- 633

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
           ++    +    + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 634 SVAGIELAPTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 --------------------FSPIKNDINEPYIL-------NPSTIDTKGKTN------- 769
                                   K        L       + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|325068693|ref|ZP_08127366.1| RecB family exonuclease [Actinomyces oris K20]
          Length = 255

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 61/192 (31%), Gaps = 18/192 (9%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT------SYCTKNAKLWPAKEYKNLLL 826
               +   ++G ++H +L+ ++ LP  +R            + +   K     +      
Sbjct: 10  PEPGSLATHKGTVVHGVLERLYDLPASERLPQAALELLPGQWASHREKNPEVMDLFEDAD 69

Query: 827 SITRLLENPMM--TTAMS-CDSYSEVSVSGKI---NCPKKDIIISGRIDQISISQQNI-F 879
            +   LE       T  +  +         ++         +++ G +D++ ++      
Sbjct: 70  QVETWLEEARGLIRTYFTLENPQRLEPAERELFVQTETGDGLLLRGFVDRLDVAPDGAMR 129

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
           + +YKT               + Q+  Y  +L            L+Y+ + +V  +  + 
Sbjct: 130 VVDYKTGRSPGTRFMEEA---LFQMRFYALVLWRLRGRAPARLQLVYLKDGRV--LTHDP 184

Query: 940 LNKAFAEISTKI 951
                    T++
Sbjct: 185 RLAELERTETRL 196


>gi|320093577|ref|ZP_08025467.1| RecB family exonuclease [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979475|gb|EFW10947.1| RecB family exonuclease [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 285

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 29/216 (13%)

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLL--------SDNQTFNRGLIIHKLLQVI--- 793
           +P     +    L+ S      +  L+  L           +    G +IH +L+ +   
Sbjct: 6   APRPGPRSWEPALSASRAKEYERCPLQYRLHVIDGYREPATRATAMGTLIHAVLEDLYGL 65

Query: 794 ------FTLPEHKRKNFITSYCTKN----AKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
                     +    +   +   ++    A      + +  L  +  +L           
Sbjct: 66  EAPGRTEEAAQEMVGDRFEALLRRDPTVGALFDDDGDRQRWLGEVRAVLG--QYFAIEDP 123

Query: 844 DSYSEVSVSGKINC-PKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHI 901
              +  +    +    +  + + G ID+I  +    + + +YKT               +
Sbjct: 124 KWIAPWAREKNVEASTRAGVRLRGFIDRIDRAPDGRLRVVDYKTGKAPSPRFTEEA---L 180

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
            Q+  Y  +L            L+Y+   +V  +  
Sbjct: 181 FQMRFYALLLMR-TAVLPARMQLVYLKSGRVLTLDP 215


>gi|237816449|ref|ZP_04595442.1| double-strand break repair protein AddB [Brucella abortus str. 2308
           A]
 gi|237788516|gb|EEP62731.1| double-strand break repair protein AddB [Brucella abortus str. 2308
           A]
          Length = 1058

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 296 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 355

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 356 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 411

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 412 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 471

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 472 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 531

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 532 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 591

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 592 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 651

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 652 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 699

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 700 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 744

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 745 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 801

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 802 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 861

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 862 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 920

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 921 AEIIDYKTGSTP 932


>gi|23502950|ref|NP_699077.1| hypothetical protein BR2102 [Brucella suis 1330]
 gi|254700732|ref|ZP_05162560.1| hypothetical protein Bsuib55_07727 [Brucella suis bv. 5 str. 513]
 gi|256370500|ref|YP_003108011.1| double-strand break repair protein AddB [Brucella microti CCM 4915]
 gi|261751244|ref|ZP_05994953.1| double-strand break repair protein AddB [Brucella suis bv. 5 str.
           513]
 gi|23348985|gb|AAN30992.1| conserved hypothetical protein [Brucella suis 1330]
 gi|256000663|gb|ACU49062.1| double-strand break repair protein AddB [Brucella microti CCM 4915]
 gi|261740997|gb|EEY28923.1| double-strand break repair protein AddB [Brucella suis bv. 5 str.
           513]
          Length = 1052

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|317124888|ref|YP_004099000.1| RecB family exonuclease-like protein [Intrasporangium calvum DSM
           43043]
 gi|315588976|gb|ADU48273.1| RecB family exonuclease-like protein [Intrasporangium calvum DSM
           43043]
          Length = 279

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 64/208 (30%), Gaps = 28/208 (13%)

Query: 755 YILNPSTIDTKGKTN--------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR-KNFI 805
             L+PS                  +          RG ++H +L+ +F LP  +R     
Sbjct: 3   SALSPSRASDFMTCPMLYRFRVIDKLPSPPTAATARGTLVHAVLERLFDLPTSERTLEAA 62

Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV-------------S 852
                +  +   A+E + L  S+    +           S  E                 
Sbjct: 63  VGLVPQEWERIAAEEPEML--SLLAEHDGRTDEWFSGAGSLLETWFGLEDPTRLEPAERE 120

Query: 853 GKINCPKKDIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
             +      +++ G +D++ ++      + +YKT     +  E      + Q+  Y  +L
Sbjct: 121 LYVETEIDGLVLRGYVDRLDVAPDGAMRVVDYKTGRSPSERFEGKA---LFQMKFYALVL 177

Query: 912 KDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
                    +  L+Y+   ++     ++
Sbjct: 178 WRLRGEVPRLLQLVYLGNGEIVRYRPDE 205


>gi|256821958|ref|YP_003145921.1| hypothetical protein Kkor_0733 [Kangiella koreensis DSM 16069]
 gi|256795497|gb|ACV26153.1| conserved hypothetical protein [Kangiella koreensis DSM 16069]
          Length = 913

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 61/553 (11%), Positives = 149/553 (26%), Gaps = 84/553 (15%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN------FSEDDIFKIC 457
              +    L     +   + L +F+    +      +L SP F          D +    
Sbjct: 290 YDISLGESLNRQPLVVTALNLLKFLNGSIEAQVLQQLLLSPYFGKPKASGTGHDQLLSDR 349

Query: 458 TQRHE----------TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF-CSPHDFFTL 506
            +  +            +    + + A    S F  +I+ +     + +   +  D+   
Sbjct: 350 ARLEKFLRKSHKQRFAISELSDLAQQAKITSSSFADLIESLSSAQQLVKTKLTLADWVKR 409

Query: 507 ILGAKKGRQ----QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP--PT 560
           +       +    + +     +V   L +  N   + +      +               
Sbjct: 410 LTSILDAAEWPGMRTLQSREYQVQQTLYDCFNQLRQFQVFYPEVISFSSLLELLSQLIAE 469

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
            +         +++M +    GLE   ++L     QV   +      I         +P 
Sbjct: 470 KQFHQELPKAPIQVMGLLETLGLEFDQLWLTGATYQVLPAQPNPNPFIDKQTLKQHQMPG 529

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                  + EY + L+  +  + D + +       + +      
Sbjct: 530 SS------------------AQREYEYAQQLFNSLLASGDDVTVSYPRFDGSSELLPSPF 571

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
             +    +   + R+    +   +          S       PL    T           
Sbjct: 572 IAEFPEQTIAANARLAPDFINQIVESSRREDSVESYQDTHGQPLA---TGVVKGGTGFFR 628

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-------- 792
            ++  P K  ++    +             E +        RG ++H +L+         
Sbjct: 629 DQINCPFKAYMSYRLKVK----------EFEEVEQGLNAMERGSLVHTVLEAFWKEHDSN 678

Query: 793 --IFTLPEHKRKNFITSYCTKNAKLWPAK----EYKNLLL-SITRLLENPMMTTAMSCDS 845
             +    E +  + I  Y       +  +    +  +       RLL+   +  A+  D+
Sbjct: 679 EILTDKSESQLSSLIEPYLASVLDEYSEQFYYLQLADFADNEFQRLLK--QLVEALQVDA 736

Query: 846 YSEVSV-----SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV-----PQEIEH 895
              +           +   + +  + ++D+I   +  + I +YKT         P+  E 
Sbjct: 737 KR-LPFTSLPPEQDQSITIEGLTFNLKVDRIDEVEDGLLIIDYKTGTPTRAKLYPKNKEL 795

Query: 896 IPYTHIAQLSIYE 908
            P     QL++Y 
Sbjct: 796 APEE--PQLALYA 806


>gi|54025152|ref|YP_119394.1| hypothetical protein nfa31830 [Nocardia farcinica IFM 10152]
 gi|54016660|dbj|BAD58030.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 302

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 75/224 (33%), Gaps = 36/224 (16%)

Query: 757 LNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
           L+PS      +  L+             ++   RG ++H +L+ ++ LP  +R     + 
Sbjct: 29  LSPSRAMDFKQCPLKYRLRAIDRIPEPPSRHAVRGTVVHAVLEDLYGLPAAERGRDRAAA 88

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTA---------------MSCDSYSEVSVSG 853
             + A      E   +   +        +                   S +S  E  V  
Sbjct: 89  LIEPAWARVLAERPEIAELVAEDGPAAFLAEVAALVDTYYRLEDPTRFSPESR-EARVEV 147

Query: 854 KINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           ++      +++ G +D+I ++    + + +YKT        E      + QL  Y  ++ 
Sbjct: 148 EL---GDGVLLRGFVDRIDVAPTGELRVVDYKTGRAPGPAQETKA---LFQLKFYALVVL 201

Query: 913 DSYPNKSLVCLLIYVSEPKVFIIPQNK-----LNKAFAEISTKI 951
            +         LIY+++ ++     +        +  A + T I
Sbjct: 202 RTRGILPAQLRLIYLADGQILTYAPDAEELDRFERTLAALWTAI 245


>gi|313499355|gb|ADR60721.1| UvrD/REP helicase [Pseudomonas putida BIRD-1]
          Length = 823

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 73/267 (27%), Gaps = 20/267 (7%)

Query: 47  LKKAQTLQQASQTQCIEERFSL-LSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKK 102
                          +  R +  L+   +       K    +    +          ++ 
Sbjct: 401 QAFCDRPLIWLDNYAMARRLAASLAGDAVAGPGFEYKVKGELAPAPLLDAFVSAANFIEN 460

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLL 160
              E         ++    S               E         V+ +  +     +  
Sbjct: 461 LGLEVNNAVAAM-SFPSGDSDALFFEALALYWKALEAHLLDQSPPVMSYNRMFALFGE-- 517

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS-LTE----DFFVGKNTHSSPRT 215
              +    +   + + + H+LIDE QD S      +R+ L E       +    H+   +
Sbjct: 518 NNPENLHLLPDPLLRPLAHLLIDEFQDVSPQIVSWLRASLAEIRRRGPAMHTGRHAQHSS 577

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ P+  +   +             + + L  ++R    ++   +
Sbjct: 578 LLCVGDDWQSIYGWRGSSPRYFMEFTKAFP------SPANTRVMLVDNYRCQQQVIDAAE 631

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRI 302
            +        G    ++          
Sbjct: 632 HLVKGTPAIAGKKARASGPAAELPGSP 658


>gi|254718139|ref|ZP_05179950.1| hypothetical protein Bru83_01086 [Brucella sp. 83/13]
 gi|265983092|ref|ZP_06095827.1| double-strand break repair protein AddB [Brucella sp. 83/13]
 gi|306837653|ref|ZP_07470522.1| double-strand break repair protein AddB [Brucella sp. NF 2653]
 gi|264661684|gb|EEZ31945.1| double-strand break repair protein AddB [Brucella sp. 83/13]
 gi|306407211|gb|EFM63421.1| double-strand break repair protein AddB [Brucella sp. NF 2653]
          Length = 1052

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGAR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLTELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|241662729|ref|YP_002981089.1| hypothetical protein Rpic12D_1125 [Ralstonia pickettii 12D]
 gi|240864756|gb|ACS62417.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 947

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 61/620 (9%), Positives = 155/620 (25%), Gaps = 98/620 (15%)

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W +  +   +  +       +    +   +     A   A+T+ + +             
Sbjct: 269 WPECATPAQAADDAAAAQLPAPILRIAGAARFEDEAAFAAHTLVDWLNAGRRSLALV--- 325

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                            ++    R L     + V     + L+   A   LM     +  
Sbjct: 326 -------------AQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWVDVVQG 372

Query: 431 QEDDLSFVCMLKSPL-------------------FNFSEDDIFKICTQRHETETVYEYIQ 471
             D  + + ++KSP                          ++     +     T      
Sbjct: 373 DGDTAALLDLIKSPFCLRDADAGTATPAWVAELERRVRRHNVSGGWGRLRRLVTDRPASD 432

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
                 +S+    +  + +   + +          +        +   R G +  D   +
Sbjct: 433 AEGEAKVSRLADRLGVLADEAALWRRAGSAKLDAWVALLAGTLDRLHMRTGLQNDDAGRQ 492

Query: 532 FLNFTLRN--------EQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAK 581
            L++  R         +  +  SL E  + L                   V I+ ++ A+
Sbjct: 493 LLDWIDRLRTSIHGSTDAGARYSLTEWRALLSMLLESAVFSEPSPPADRRVVILPLNGAR 552

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
                 V +V            + +     +  + G+P                    + 
Sbjct: 553 MRRFDGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPD------------RAQRFAQQA 600

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
               E              ++++    +    +      W + +              +T
Sbjct: 601 RDLAEVLL--------NQPEVVLTWQRHGGRGEPHRLSGWLERLQRRLAVSGVRIDTSVT 652

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                    + + ++   +         +   +           P +  +     L    
Sbjct: 653 L-------PSLQTTSQPTDMPAPAAPTLVPSTLSAAAYNSLRRCPYQFFVGRMLRL---- 701

Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKNAK 814
                   LE +  + +  + G I+H +L                 R + + +   +   
Sbjct: 702 ------GELEEVSDELEKRDIGGILHAILHRFHRQLLETPMHDPADRLSLLQTITDEQFG 755

Query: 815 LWPAKEYKNL--LLSITRLLEN-PMMTTAMSCDSYS----EVSVSGKINCPKKDII-ISG 866
              A++   L        ++ +      A   D +     EV V   I    +  + + G
Sbjct: 756 PLLAEDGNALRFYRRWLGVMPSYLAWQAAREADGWRFEAGEVDVDTSITLSDERALRLRG 815

Query: 867 RIDQISISQQ-NIFIFEYKT 885
           RID+I +  +  + + +YKT
Sbjct: 816 RIDRIDVHDEHGVAVLDYKT 835


>gi|229085590|ref|ZP_04217825.1| UvrD/Rep helicase [Bacillus cereus Rock3-44]
 gi|228697738|gb|EEL50488.1| UvrD/Rep helicase [Bacillus cereus Rock3-44]
          Length = 698

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 67/178 (37%), Gaps = 23/178 (12%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S +Q  +++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPLQIYILKEIT-----------MGNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   ++V    E   GL+   
Sbjct: 507 --IEDWNDFKEVFQETGY--------YELTRSYRSTKEIIEFANEVIKNAEVPVGLATPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
             +              ++ + +  +     N +  +     D   +     + A  I
Sbjct: 557 FRSGEKVKVISTDDQFTEIIKTL--EDMQNENVKTIAVIGRTDDECRNIYEKLTAAGI 612


>gi|206968209|ref|ZP_03229165.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1134]
 gi|206737129|gb|EDZ54276.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1134]
          Length = 1171

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 71/719 (9%), Positives = 197/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVAEE---------NYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   +   
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIHA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V     + +  +     +  G         +  
Sbjct: 587 DQVLIANIDHSRLSDVKATFIIGVNEGVIPAAPMDEGMLSDEEREVLGAAGIELAPTT-- 644

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 645 -----------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PNVKDSFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECKHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|295095006|emb|CBK84097.1| ATP-dependent nuclease, subunit B [Coprococcus sp. ART55/1]
          Length = 1234

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 108/936 (11%), Positives = 244/936 (26%), Gaps = 192/936 (20%)

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
           +D    + D+ +   +    +  + L   +   +EE  +    +  E LI    + + + 
Sbjct: 136 RDSIDAVMDKLDKDSLVYRKMHDIRL---IYERFEEYNRDGSYIVAEQLIELLAECVDRS 192

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           D+ A          +H+ +D     + +Q E+IR L                +  V    
Sbjct: 193 DMLA---------HSHLYLDGFTGFTPVQMELIRKLMTRVES----------MTFVFTID 233

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            S   F   +   + R  +   +          +  L              + V      
Sbjct: 234 ASQIGFTKPKEYELFRLTKETVQALVRMAGDEHVDILD-------------NVVMCQNRR 280

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                +         +      G V                   +       +     A+
Sbjct: 281 PYRFEKSMELAGLEANLFRYPHGRV-------------------AGDDGDIHVVAVDRAA 321

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A  IA  I  ++           +  + KDI V+     D   +    R   ++Y I 
Sbjct: 322 DEAEYIAGRIRELVRD---------KGYRYKDIAVVA---GDLQDVARYYRQAMDEYDIP 369

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ---- 459
           V  +    L        + A    +       S   +LKS +    +DDI ++       
Sbjct: 370 VFIDANVSLKGDPCSDTIRAFLGVMTDNFSFDSVFRLLKSGMTGVDQDDIERMENYVLLR 429

Query: 460 --RHETETVYEYIQKFANCGISKFQHVIKYIHELI------------------HIAQFCS 499
             R       E          +  + +   I EL                         S
Sbjct: 430 NLRGYRSWTKEITDDRNPDYAADMESIRAQIMELFPDKCIDVWKPTSPGSKNTVRTYTES 489

Query: 500 PHDFFTLI-----LGAKKGRQQFISRFGN-----EVIDVLDEFLNFTLRNEQNSYSSLQE 549
            ++F   +     L + K       R+        + D +            +   +++E
Sbjct: 490 LYNFLAQLDVCGKLESHKKVLYEQERWDEGDAYGRIFDKVVALFEKMEAIIGDEKLTVKE 549

Query: 550 LISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
               L+     ++        + V +  +  ++     V+F+      +      K   +
Sbjct: 550 YAGILDAGIADMEIGIVPPTIDRVVVGDMTRSRLNHIKVLFMAGVNEGIIPKPAKKGRIL 609

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             +                + N   +                 Y  +T+ASD + +    
Sbjct: 610 SGADRQSLENCGIELAPSDKTNAYIEQFYI-------------YTTLTKASDMIYVLYRK 656

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
              + K        D + + F +    +                    H  +    E  +
Sbjct: 657 IGEDLKSMKPSYLIDRIKNIFPDIRTEEYDVDGQMPETAAGALRYIIRHSDDVEAGETLD 716

Query: 729 TIKQLMDEQKIPKKLFS-----------------PIKNDINEPYILNPSTIDTKGKTNLE 771
            +++L+ +    ++L S                  ++    E  + + S ++   +   +
Sbjct: 717 AVRKLLSKMGYGRQLRSINFGQNYVNSSKNLSPDTVRLIYGENLVESVSKLERYAECQFK 776

Query: 772 SLLS-----------DNQTFNRGLIIHKLLQVIF------------TLPEHKRKNFITSY 808
             L+                N G I+H  ++ IF             L E + +     +
Sbjct: 777 YFLTYGLSLRERETYRIGAANVGNILHSTMEKIFSFVRMFRDNDWVHLDEAELEQKAVKF 836

Query: 809 C-----TKNAKLWPAKEYKNLLLSITRLLEN---PMMTTAMSCDSYSEVSVSGKINCPKK 860
                  +    +        +  +   + +     + T + C      +   + N  + 
Sbjct: 837 ANESAEDEAGPYFEDSSRAAYMKKLLADVASRTARTLRTFIRCGEMDPENFERRFNTSEN 896

Query: 861 ---------------DIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHI 901
                           + + G ID+I      ++ +  I +YK+      +I+ +     
Sbjct: 897 ADNIDRYIFNLPNGLTMSLKGVIDRIDEFTDDRDAYFKIIDYKSS-DKKLDIDKVLGGLQ 955

Query: 902 AQLSIYEKILKDSYP------NKS----LVCLLIYV 927
            QL  Y  I  +          +     +  LL Y 
Sbjct: 956 MQLVTYGAIACELEKRRMAQLGRPGGIHVGGLLYYT 991


>gi|146308253|ref|YP_001188718.1| UvrD/REP helicase [Pseudomonas mendocina ymp]
 gi|145576454|gb|ABP85986.1| UvrD/REP helicase [Pseudomonas mendocina ymp]
          Length = 628

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 90/296 (30%), Gaps = 13/296 (4%)

Query: 25  YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
                   + +  + +       +      +  +    EE     +   L          
Sbjct: 220 ARLRRAQQRLLRQAYQNAYAEDARFRVLTHRLLKLPAPEEPPQGKAKAPL-DACKLPGEF 278

Query: 85  ITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN 144
               + +      +  +       ++     T          +   +  + H+       
Sbjct: 279 AALPLFELLHGQIDFAESLGIRLDRL--DLKTLACGPRERDFIEAMQRFHQHFSALLHSQ 336

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++ F       ++ L+               ++H+LIDE QD S      ++++     
Sbjct: 337 GLISFNGAFAQLSERLQGAGDKPGPALL---ALSHLLIDEFQDISPQIVLWLQAVHRRLH 393

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                     +L A+GD+ QSIY + G+ P+  +   R    R      K + + L  ++
Sbjct: 394 ----QAGERISLMAIGDDWQSIYGWRGSSPELFIDFDRHFPSRGRG---KSTTLLLNTNY 446

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
           RS   ++   +KV +  +N Q  +  +   ++     +  +    L   +    + 
Sbjct: 447 RSIEPVIRDGEKVLAEVQNKQAKTCVAARAMQPGDHGVRLIQRFDLASGLPRLLEE 502


>gi|320107767|ref|YP_004183357.1| putative DNA repair protein [Terriglobus saanensis SP1PR4]
 gi|319926288|gb|ADV83363.1| putative DNA repair protein [Terriglobus saanensis SP1PR4]
          Length = 927

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 79/641 (12%), Positives = 180/641 (28%), Gaps = 68/641 (10%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG---TDTIFS 364
           V +              Q +   S   +   +    +LA   A  + +++    + TI  
Sbjct: 208 VVIEAMEERGASVDHAEQPKQAESLSLATCADDREELLA--CASWVKDLLACEGSGTIAV 265

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                    ++I  + R+R            + ++       +    L+    ++D + L
Sbjct: 266 VVPDLDETREEIDRVFRERIAPWSYE-----MGSESAPPFEFSLGDALSKTTMVRDALLL 320

Query: 425 GRFILSQEDDLSFVCMLKSPLFN----FSEDDIFKICTQRHETETVYEYIQKFANCG--- 477
            R++    +      +++SP        SE   F     R       E   + A      
Sbjct: 321 LRWLHGPIELEQVSQIVRSPFLGNEADVSERARFDAQVLRRRKRLSLELELREAAKMLIF 380

Query: 478 -------ISKFQHVIKYIHELIHIAQ--------FCSPHDFFTLILGAKKGRQ-QFISRF 521
                   +  Q +   + +   +AQ        +    D    +L        +     
Sbjct: 381 VKGDATPHTSLQSLSTALMQAQKLAQPRLKKAMGWSDWSDLVREVLETAGWPGPRSADSR 440

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
             ++    D+ L+     +      + +E++S L         A  +    ++IM    A
Sbjct: 441 EFQLRKRWDDLLDELAGMDALGERVTYEEMLSTLRSMAEETLFAPQSRGARIQIMGPMEA 500

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            G     V+ +      +  K      +  +L  + G+P   P   + +   +  +    
Sbjct: 501 AGSHFQGVWFLHADDMRWPRKSSTSPLLPWTLQKEAGMPGAAP---AMDFAFARSVTERL 557

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            S+  E   +    +TRA+  +             +  R   D V  +    E V+    
Sbjct: 558 ASSAAEV--VFSYAVTRAAGTMRPSPAVMALGGLNAWGRAVVDTVDTAVEVMEEVEDSTP 615

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
             ++  +                       +    +        S  +        L   
Sbjct: 616 LPALTGERLRGGAQIFELQAACSFRAFAEARLFSAQPDEVDPGMSAPERGNATHEALEKF 675

Query: 761 TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
              TK +  LE L ++                I  +    +++ +   C   A       
Sbjct: 676 WRRTKTQAELERLSTE----------------IDPVSGRTKRDVVLDTCIAEALEVSDSS 719

Query: 821 YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI------NCPKKDIIISGRIDQISIS 874
           ++   +SI     + +++  +  +    V    +            D+ +  R+D++   
Sbjct: 720 WERAYISIQHQRLHELLSRWLEIERKRPVPFEVRYTEHEVEETMIGDLHLRLRVDRVDEI 779

Query: 875 QQ----NIFIFEYKTHHHVPQE-IEHIPYTHIAQLSIYEKI 910
                    + +YKT    P E +   P     QL +Y   
Sbjct: 780 AGENGPEFVLIDYKTGRCSPSEWLGDRPDK--PQLPLYAIA 818


>gi|25028185|ref|NP_738239.1| hypothetical protein CE1629 [Corynebacterium efficiens YS-314]
 gi|23493469|dbj|BAC18439.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 291

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 34/236 (14%)

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFT 795
            +P  +    P  L+PS      +  L                   +G ++H +L+ +  
Sbjct: 15  TAPAPDRKPRPLALSPSRAGDYQQCPLLYRLRAIDRLPEPKTVAQVKGTLVHAVLEEMHR 74

Query: 796 LPEHKR--KNFITSYCTKNAKL-WPAKEYKNLL--LSITRLLEN--PMMTTAMS------ 842
           LP  +R     +       A++     +   L+    +   L     ++           
Sbjct: 75  LPRDQRDYPAMVKRLKPHWAQMCAEDPDLNELVPGDQLYDFLVECRTLLRGYFEMENPQG 134

Query: 843 -CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900
              S  E+ V   +      + + G ID++  +    I + +YKT      +        
Sbjct: 135 FDASDVEMYVDTVLP---NGVPVRGFIDRVDTAPTGEIRVVDYKTGKKPKPQWSQQA--- 188

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ-----NKLNKAFAEISTKI 951
             Q+  Y  +    +        L+Y+       +           +   ++  +I
Sbjct: 189 QFQMLFYALVYWRLFDQIPAQLRLMYLKVNDSMFLTPSREQLEYFERDLGDLWARI 244


>gi|313632208|gb|EFR99277.1| ATP-dependent nuclease subunit B [Listeria seeligeri FSL N1-067]
          Length = 1056

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 82/699 (11%), Positives = 182/699 (26%), Gaps = 156/699 (22%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           Q ++       IA  I  +               + KDI +L R   D  ++        
Sbjct: 206 QANNKRAEIEGIAREIRGLTSNG----------YRYKDIAILTRNLGDYDVLCETLME-- 253

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            DY I +  + +  +  H  I+ + +    I            +K+  F  S  D+  + 
Sbjct: 254 -DYNIPIFIDKKRAMAKHPFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSAADVADMR 312

Query: 458 TQRHETETV-YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF------------- 503
            +    E    E   +       K   + + I  L       +  +              
Sbjct: 313 RKSDILENYVLENGIQNKWKWEKKGDWIYRKIRGLSINVLPQTDEELNIQNMINEMKNRI 372

Query: 504 -----------------FTLILGAKKGRQQFISRFGNEVIDVLDE---FLNFTLRNEQNS 543
                              L L      +Q  +    E      E   +L     +EQ  
Sbjct: 373 VIPLSTLETNLAKAKTGIELALALYHYLEQVQAAEHLEAWRRTAEENGYLELAREHEQAW 432

Query: 544 YSSLQELISELEQYPPT------------------IKRAHSANHNEVRIMTVHTAKGLES 585
            S    L   +E                              + ++V +  +  AK L+ 
Sbjct: 433 TSITALLDEFVEVLGEESLELSSFMEIIITGLDALEFSLLPPSLDQVILSDMENAKLLDM 492

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            V+F +     V   +   K  +     +                  +  +K   K+   
Sbjct: 493 KVIFAIGMNDGVMPLRQKDKGILSDQDRESLR-------------EQNSSLKASAKNNIG 539

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E + L Y  ++  SD+L +         K  ++  +   +   F N      +   + ++
Sbjct: 540 EEDLLAYKIVSLPSDKLFLSYPVADEEGKVLSESNYLRKIKGQFKNLNEEIYLTDPSLLS 599

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY---------- 755
            +E   Y  S          + +  K+      +    ++   +D  E            
Sbjct: 600 DEEQSRYIRSKRAALGLLTSQLQMYKRGYPLSNVWWDAYNSYFDDKKESKNAKQVLSSLY 659

Query: 756 ---------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
                                  + S ++                  E      Q  + G
Sbjct: 660 YENKTEALQEATAKGLFGEDIHASVSRMEKFFSCEFQHFAQYGLKLEERAHFQLQAVDMG 719

Query: 784 LIIHKLLQVIFTLPE--------------HKRKNFITSYCT---KNAKLWPAKEYKNLLL 826
            I H  ++ I    +               +       +     ++  L  +K  + +  
Sbjct: 720 EIFHAAMEWISEELKRNNLDWGNLTVEECKELAKLAMKFLAPKIQHEILLSSKRMEYIQY 779

Query: 827 SITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQ-- 870
            + +++     ++       ++  V +                     ++++ GRID+  
Sbjct: 780 KLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSNRELLLQGRIDRID 839

Query: 871 ISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           ++       + I +YK+  H    +  + Y    Q+  Y
Sbjct: 840 VAEEDNRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTY 877


>gi|227833082|ref|YP_002834789.1| putative RecB family exonuclease [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182428|ref|ZP_06041849.1| putative RecB family exonuclease [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454098|gb|ACP32851.1| putative RecB family exonuclease [Corynebacterium aurimucosum ATCC
           700975]
          Length = 267

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 66/224 (29%), Gaps = 34/224 (15%)

Query: 756 ILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRK-NFIT 806
            L+PS      +  L               +   +G ++H +L+ +  LP  +R+     
Sbjct: 6   ALSPSRASDYKQCPLLYRFRAIDKLPEPKTKAQVKGTLVHAVLEKMHQLPREQREYPAAV 65

Query: 807 SYC--TKNAKLWPAKEYKNLL---LSITRLLENPMM-TTAMS-------CDSYSEVSVSG 853
                     L    E + L+     +   +E   +                  E+ V  
Sbjct: 66  KMIKPEWAVMLESDPELRELVPEPEELDFFVEARELIKGYFQMENPQGFDAHECEMYVDT 125

Query: 854 KINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            +      + + G ID++ ++    + + +YKT                 Q++ Y  +  
Sbjct: 126 VLP---NGVPVRGFIDRVDVAPTGEVRVVDYKTGKKPLPRYSQDA---QFQMNFYALVYW 179

Query: 913 DSYPNKSLVCLLIY---VSEPKVFIIPQNK--LNKAFAEISTKI 951
                      L+Y   +    +   P+      +   E+  KI
Sbjct: 180 RLLGTIPTQLRLMYLKVLDSMFLTPGPEELEYFERDLGELWAKI 223


>gi|167034300|ref|YP_001669531.1| UvrD/REP helicase [Pseudomonas putida GB-1]
 gi|166860788|gb|ABY99195.1| UvrD/REP helicase [Pseudomonas putida GB-1]
          Length = 814

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 11/147 (7%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS-LTE----DFFVGKNTHSSPRT 215
              +    +   + + + H++IDE QD S      +R+ L E       +    H+   +
Sbjct: 509 NNPENLQLLPDPLLRPLAHLMIDEFQDVSPQIVSWLRASLAEIRRRGPAMHTGRHAQHSS 568

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   +             + + L  ++R    ++   +
Sbjct: 569 LLCVGDDWQSIYGWRGSSPKYFMEFTKAFP------SPANTRVMLVDNYRCQQQVIDAAE 622

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRI 302
            +        G    ++          
Sbjct: 623 HLVKGTPAIAGKKARASGPAAELPGSP 649


>gi|229542654|ref|ZP_04431714.1| UvrD/REP helicase [Bacillus coagulans 36D1]
 gi|229327074|gb|EEN92749.1| UvrD/REP helicase [Bacillus coagulans 36D1]
          Length = 232

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
                   + +    +KN+  ++ + ++  +  K+  +++E I           F     
Sbjct: 116 LDATDQLSVIKNLLKEKNLDPKKFDPRA--ILGKISSAKNELIDFEQYAKQAGDFFD--- 170

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              +   +   Y++  KKN  LDF+DLI+ T  L K+      +     ++  +I +DE 
Sbjct: 171 --QIVSDVYEAYQQRLKKNQSLDFDDLIMMTIQLFKR---VPEVLEYYQRKFQYIHVDEY 225

Query: 186 QDT 188
           QD+
Sbjct: 226 QDS 228


>gi|260752462|ref|YP_003225355.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258551825|gb|ACV74771.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 993

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 59/633 (9%), Positives = 165/633 (26%), Gaps = 64/633 (10%)

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             +++         P+N +          R+           + +  +     +    + 
Sbjct: 295 RKEVIEWDPPKNYHPDNREQAIRHVMAPARYTDRWRSLPEKERAFPNLSVIETAHPEEEA 354

Query: 327 E----SWTSYFDSLPQESSASILARRIAYTISNMIGT-DTIFSNGKKRVIQAKDILVLVR 381
           +    +  +  +   Q ++     R +A  +S ++        +   R +      +L+ 
Sbjct: 355 QVIALALRAAVEEKGQTAALVTPDRALAIRVSALLKRFGIDADDSAGRPLSLTPPGLLLL 414

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                    F         K  +V            I+ L  + R             +L
Sbjct: 415 DLVSLAADHFSAVSFLAIAKHPLVAFGEDRDLWRDHIRSLDMILR-----------GPLL 463

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           ++ L   +      +  Q+ + E +  + +                  +   +       
Sbjct: 464 RNGLAGITAKIKEAVDNQKADPELLAWWEKTKIP--------FQALDQQYQSVLPLTKIV 515

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
                      G + +    G+   D++ E  +    + ++   S    +   +      
Sbjct: 516 KILRETANQIAGEKIWAEAAGHLAADLIAEIESLAADHNEDMRFSDFAHVLR-QLMDKQA 574

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            R  +  H  + I  +  A+   + ++        V+         + P +  + G+P  
Sbjct: 575 VRPMTGGHPRIFIWGLIEARLQHADLMIAASLNETVWPPIKEADPWLAPRIRSELGLPGL 634

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
             +     +  S ++   K            + +TRA                 +    +
Sbjct: 635 ELRIGIAAHDFSSVLGAKK------------ILLTRARR----------DARAPTMPSRF 672

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
           +  +     N      +        +       +   P    L+R + I     +     
Sbjct: 673 WLRLEAMAANLHHADNLPYWARQLDEPKGFRPVTRPAPNPPVLDRPKRIAVTRFDSLQSD 732

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                           +    +  G   L+ + ++     RG +IH +L+        + 
Sbjct: 733 --------------PYSYYASNILGLRKLDPVDAEPTAAWRGSLIHSILENWVKEDNSRI 778

Query: 802 KNFITSYCTKNAKLWPA-KEYKNLLLSITRLLENPMMT-TAMSCDSYSEVSVSGKINCPK 859
                        +     +    L  + + ++         + +  + + V  +     
Sbjct: 779 GRLKPRALAFLESINAHIIQKTLWLPRLLQAIDWIEGEVQKNAAEGRTILDVEREGRSQI 838

Query: 860 KDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQ 891
             I + G +D+I      ++ I +YKT      
Sbjct: 839 NGIELFGFVDRIDRMGDGSLAIVDYKTGTPPSA 871


>gi|284031137|ref|YP_003381068.1| RecB family exonuclease-like protein [Kribbella flavida DSM 17836]
 gi|283810430|gb|ADB32269.1| RecB family exonuclease-like protein [Kribbella flavida DSM 17836]
          Length = 295

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 73/225 (32%), Gaps = 34/225 (15%)

Query: 750 DINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
             +    L+PS         L              +    RG ++H +L+ ++ LP  +R
Sbjct: 10  PAHPRAALSPSRAADFMSCPLKYRFRVVDRLPEKPSAAAVRGTVVHAVLERLYDLPRGQR 69

Query: 802 KNFITSYCTK---NAKLWPAKEYKNLLL------SITRLL--ENPMMTTAMS-------C 843
                +   +      L    E   L         + + L   + ++    +        
Sbjct: 70  TLEQAALMLEPQWQRVLADEPEVAQLFEDDAEGTELAKWLAEAHQLLGKYFTLEDPNALE 129

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIA 902
            +  E+ V  ++      + + G +D++ ++    I + +YKT     +  E      + 
Sbjct: 130 PAERELYVETELES---GLTLRGYVDRLDVAPTGEIRVVDYKTGRSPSEFFEAKA---LF 183

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI-IPQNKLNKAFAE 946
           Q+  Y  +L         +  L+Y+   ++   +P     +A   
Sbjct: 184 QMKFYALVLWRLRGVVPSMLQLVYLGNGEIVRYVPDEADLRACER 228


>gi|289765879|ref|ZP_06525257.1| LOW QUALITY PROTEIN: DNA helicase [Fusobacterium sp. D11]
 gi|289717434|gb|EFD81446.1| LOW QUALITY PROTEIN: DNA helicase [Fusobacterium sp. D11]
          Length = 284

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 24/128 (18%)

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF  L+     +LK        +  I  +   + IDE QD + IQ++ I           
Sbjct: 88  DF--LLEYILKILKNNKSC---QEYIKSKFECMYIDEAQDNNEIQYKFIEIFL------- 135

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    +F VGD  QS+YSF GA  K  L  +           + F   +L  +FRS 
Sbjct: 136 ---TLGINIFMVGDPSQSLYSFRGANSKVFLDYENR---------EDFISKKLNQNFRSH 183

Query: 268 ADILTVVD 275
             I    +
Sbjct: 184 PFINEFAN 191


>gi|256027933|ref|ZP_05441767.1| ATP-dependent DNA helicase UvrD [Fusobacterium sp. D11]
          Length = 236

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 49/128 (38%), Gaps = 24/128 (18%)

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF  L+     +LK        +  I  +   + IDE QD + IQ++ I           
Sbjct: 40  DF--LLEYILKILKNNKSC---QEYIKSKFECMYIDEAQDNNEIQYKFIEIFL------- 87

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
              +    +F VGD  QS+YSF GA  K  L  +           + F   +L  +FRS 
Sbjct: 88  ---TLGINIFMVGDPSQSLYSFRGANSKVFLDYENR---------EDFISKKLNQNFRSH 135

Query: 268 ADILTVVD 275
             I    +
Sbjct: 136 PFINEFAN 143


>gi|218902337|ref|YP_002450171.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH820]
 gi|251764579|sp|B7JDU3|ADDB_BACC0 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|218538203|gb|ACK90601.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH820]
          Length = 1171

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 197/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            +          N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVIDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|49479136|ref|YP_035377.1| ATP-dependent nuclease subunit B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|81396897|sp|Q6HM44|ADDB_BACHK RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|49330692|gb|AAT61338.1| ATP-dependent nuclease, subunit B [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1171

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 70/719 (9%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +D+ VL+
Sbjct: 299 EARPNEKFNGEASVTIHTAANLRAEVEGVAREIRRLVAEE---------NYRYRDVAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMNLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I++  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKDTFITNDVNDLSRSEQISFVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|30019292|ref|NP_830923.1| ATP-dependent nuclease subunit B [Bacillus cereus ATCC 14579]
 gi|81435561|sp|Q81GQ0|ADDB_BACCR RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|29894835|gb|AAP08124.1| ATP-dependent nuclease subunit B [Bacillus cereus ATCC 14579]
          Length = 1171

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 73/719 (10%), Positives = 196/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTISTAANLRAEVEGVAREIRKLVADE---------KYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKEAMREEMDEFENYCLAYGVQGKRWTAEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L   + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEELRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++  +    F++     V              L+D+    +     +   
Sbjct: 587 DQVLIANIDHSRLSDVRATFIIGVNEGVIP----VAPMDEGMLSDEEREVLGAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRAS++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRASEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            N +        N +++ E I+Y  +     +  ++   T K+   E  +          
Sbjct: 694 PNVKDSFISNDVNDLSRSEQISYVATPEVTLSYVMQHLLTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAKKLSTAVSRDLYGDIIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSVLVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB [Clostridium
           acetobutylicum ATCC 824]
 gi|81529945|sp|Q97GV2|ADDB_CLOAB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|15025266|gb|AAK80220.1|AE007727_4 ATP-dependent exonuclease synthesis protein AddB (superfamily I
           helicase) [Clostridium acetobutylicum ATCC 824]
 gi|325509679|gb|ADZ21315.1| ATP-dependent exonuclease synthesis protein AddB (superfamily I
           helicase) [Clostridium acetobutylicum EA 2018]
          Length = 1153

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 58/533 (10%), Positives = 152/533 (28%), Gaps = 107/533 (20%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           +V +    L       +  +    ++   +   +Q ++   +++ +++ E ++  +    
Sbjct: 482 NVAEICRALFEFLYDINVPEAVEKMVNEFRESGRQILANEYSQIWNIIIELMDQLVEVMG 541

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           N   +L++    L       K     +  ++V + ++   K     +++++     VF  
Sbjct: 542 NEKVNLEQFSRILFIGIKEHKMGLIPSSLDQVLVGSIDRLKSHAIKILYIIGVNDGVFPS 601

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
             +           + GI     +    +  V        ++   E   L+Y  +T + +
Sbjct: 602 AAM-----------EEGILSDRDREILNSKGVELAKDTKTQA--MEQRFLVYTAITNSKE 648

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSF------------HNDERVKKIKLTNSINKDE 708
            L +         K        + V   F             NDE   K+        +E
Sbjct: 649 YLFLSYPIADYEGKTLRPSLIVNRVKTLFPKIVEKSDVIKIENDEESMKLISATVPTFNE 708

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIP---------KKLFSPIKNDINEPYIL-- 757
            I+        E         + +   +                ++   + I+E   L  
Sbjct: 709 MISSFRKEIDGEGEVSSIWHDVYRWYSKSDEWTGKCNNMFKAISYTNQVDYISEEKALKL 768

Query: 758 -------NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                  + S ++   +              +  +      + G  +HK++       + 
Sbjct: 769 YGGSLKMSVSRLEKYIECPFSYYVQYGLNIKDRKIFSLTPPDLGSFMHKVIDRFCETIKE 828

Query: 800 ---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP-------MMTTAMSCDSY--S 847
                       C +       +E +    SI     +P        +   +       +
Sbjct: 829 ENIDWNEVNDHICEEKIYKIVDQEIEGRGGSILN--SSPRYSYIALRLKRILKRTVRIVA 886

Query: 848 EV-------SVSGKINCPKKD--------------IIISGRIDQI--SISQQN--IFIFE 882
           E         V  +++                   ++++GRID+I       +  I I +
Sbjct: 887 EQFKRGSFKPVGYEVSFENGGSYPPITVGLNDGSEVVLTGRIDRIDMMEKDGSTYIRIVD 946

Query: 883 YKTHHHVPQEIEHIPYTHIA---QLSIYEKIL---KDSYPNKSL--VCLLIYV 927
           YK+      +I  +   +     QL +Y   +   ++      +    +L + 
Sbjct: 947 YKSG----NKIFKLSDVYYGFDIQLLLYLNAILENENLDEEDKVLPGAILYFT 995


>gi|261215052|ref|ZP_05929333.1| double-strand break repair protein AddB [Brucella abortus bv. 3
           str. Tulya]
 gi|260916659|gb|EEX83520.1| double-strand break repair protein AddB [Brucella abortus bv. 3
           str. Tulya]
          Length = 1052

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLAETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|254694723|ref|ZP_05156551.1| hypothetical protein Babob3T_08698 [Brucella abortus bv. 3 str.
           Tulya]
          Length = 1058

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 296 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 355

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 356 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 411

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 412 RVVGELARFGIDADDSGGRHLRDVETATLLRLLAETVFNPGDPVALLALVKHPLLRLGGA 471

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 472 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 531

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 532 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 591

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 592 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 651

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 652 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 699

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 700 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 744

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 745 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 801

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 802 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 861

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 862 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 920

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 921 AEIIDYKTGSTP 932


>gi|161620014|ref|YP_001593901.1| double-strand break repair protein AddB [Brucella canis ATCC 23365]
 gi|161336825|gb|ABX63130.1| double-strand break repair protein AddB [Brucella canis ATCC 23365]
          Length = 1052

 Score = 81.1 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 76/672 (11%), Positives = 169/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDDTGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K      +   +     +     ++    +     +            
Sbjct: 646 VIGGLNEGSWPTKTRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGID--------- 696

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
              +V +TR+            S+   +    W   +      D     +          
Sbjct: 697 ---HVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|254707380|ref|ZP_05169208.1| hypothetical protein BpinM_10505 [Brucella pinnipedialis
           M163/99/10]
 gi|254709078|ref|ZP_05170889.1| hypothetical protein BpinB_02192 [Brucella pinnipedialis B2/94]
 gi|254713495|ref|ZP_05175306.1| hypothetical protein BcetM6_09104 [Brucella ceti M644/93/1]
 gi|254716149|ref|ZP_05177960.1| hypothetical protein BcetM_06896 [Brucella ceti M13/05/1]
 gi|256030603|ref|ZP_05444217.1| hypothetical protein BpinM2_08117 [Brucella pinnipedialis
           M292/94/1]
 gi|256158599|ref|ZP_05456489.1| hypothetical protein BcetM4_07036 [Brucella ceti M490/95/1]
 gi|256254010|ref|ZP_05459546.1| hypothetical protein BcetB_06878 [Brucella ceti B1/94]
 gi|261217922|ref|ZP_05932203.1| double-strand break repair protein AddB [Brucella ceti M13/05/1]
 gi|261221151|ref|ZP_05935432.1| double-strand break repair protein AddB [Brucella ceti B1/94]
 gi|261314863|ref|ZP_05954060.1| double-strand break repair protein AddB [Brucella pinnipedialis
           M163/99/10]
 gi|261316579|ref|ZP_05955776.1| double-strand break repair protein AddB [Brucella pinnipedialis
           B2/94]
 gi|261321228|ref|ZP_05960425.1| double-strand break repair protein AddB [Brucella ceti M644/93/1]
 gi|265987651|ref|ZP_06100208.1| double-strand break repair protein AddB [Brucella pinnipedialis
           M292/94/1]
 gi|265997111|ref|ZP_06109668.1| double-strand break repair protein AddB [Brucella ceti M490/95/1]
 gi|260919735|gb|EEX86388.1| double-strand break repair protein AddB [Brucella ceti B1/94]
 gi|260923011|gb|EEX89579.1| double-strand break repair protein AddB [Brucella ceti M13/05/1]
 gi|261293918|gb|EEX97414.1| double-strand break repair protein AddB [Brucella ceti M644/93/1]
 gi|261295802|gb|EEX99298.1| double-strand break repair protein AddB [Brucella pinnipedialis
           B2/94]
 gi|261303889|gb|EEY07386.1| double-strand break repair protein AddB [Brucella pinnipedialis
           M163/99/10]
 gi|262551579|gb|EEZ07569.1| double-strand break repair protein AddB [Brucella ceti M490/95/1]
 gi|264659848|gb|EEZ30109.1| double-strand break repair protein AddB [Brucella pinnipedialis
           M292/94/1]
          Length = 1052

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 77/672 (11%), Positives = 167/672 (24%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     +   +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEVLENMARDETGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|241664248|ref|YP_002982608.1| UvrD/REP helicase [Ralstonia pickettii 12D]
 gi|240866275|gb|ACS63936.1| UvrD/REP helicase [Ralstonia pickettii 12D]
          Length = 573

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 46/149 (30%), Gaps = 22/149 (14%)

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               L ++D   W+   +     HIL+DE QD   +   ++ +L               T
Sbjct: 189 ALRALAEKD---WLLQALCYRFPHILVDEAQDVGPLHGALLDALAG----------GGST 235

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +  +GD  Q IY F GA+        R    +      K     L  + RS   I+ V +
Sbjct: 236 VSLIGDPNQGIYEFAGAD----GSFLREYGTK-----PKVVNFSLSQNRRSVNSIVNVAN 286

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +                   H      +
Sbjct: 287 HLAGAGCTPIREPGPRRHGAFHLPYDEDK 315


>gi|282852210|ref|ZP_06261562.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282556629|gb|EFB62239.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 300

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 49/192 (25%), Gaps = 15/192 (7%)

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST--IDTKGKTNLESLLSDNQTF 780
           P E            +I K    PI  ++    +++ S   +    +T            
Sbjct: 94  PFEDATKTTAYQSVSEIKKAFNDPIDTELENSRLISSSNRYLQPIDETPTFLEGQKFTGA 153

Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-NAKLWPAKEYKNLLLSITRLLENPMMTT 839
             G  +H +LQ         ++N               +    +L               
Sbjct: 154 EIGTAMHLVLQYYNYEGNKDQENLDQEIDQLVELGKLNSLMVPHLSKEALNWFVMSDFAK 213

Query: 840 AM---SCDSYSEVSVS---------GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
                    + E   S            + P   +++ G +D    ++  + +F+YKT  
Sbjct: 214 EFWKQPDKLHRESQFSSLVNASELFNDFSDPSAKVLVHGTVDGYFEAKDGLILFDYKTDF 273

Query: 888 HVPQEIEHIPYT 899
                 E     
Sbjct: 274 VDKTNEEQAIEK 285


>gi|260567426|ref|ZP_05837896.1| double-strand break repair protein AddB [Brucella suis bv. 4 str.
           40]
 gi|260156944|gb|EEW92024.1| double-strand break repair protein AddB [Brucella suis bv. 4 str.
           40]
          Length = 1052

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 76/672 (11%), Positives = 169/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDDTGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K      +   +     +     ++    +     +            
Sbjct: 646 VIGGLNEGSWPTKTRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGID--------- 696

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
              +V +TR+            S+   +    W   +      D     +          
Sbjct: 697 ---HVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|52144190|ref|YP_082639.1| ATP-dependent nuclease, subunit B [Bacillus cereus E33L]
 gi|81689029|sp|Q63EM3|ADDB_BACCZ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|51977659|gb|AAU19209.1| ATP-dependent nuclease, subunit B [Bacillus cereus E33L]
          Length = 1171

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 197/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFHGEASVTIRTAANLRAEVEGVAREIRRLVADE---------DYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKDTFITNDVNDLSRSEQILYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|134299274|ref|YP_001112770.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1]
 gi|251764588|sp|A4J4E2|ADDB_DESRM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|134051974|gb|ABO49945.1| UvrD-like DNA helicase, C terminal protein [Desulfotomaculum
           reducens MI-1]
          Length = 1155

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 80/684 (11%), Positives = 177/684 (25%), Gaps = 144/684 (21%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                   A  I  +   +          +  +DI+V++R   D    + L   + ND+ 
Sbjct: 319 RRAEVEAAAREIIRLCREEE---------LSWRDIVVVLR---DLTNYSDLINTIFNDHG 366

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI----- 456
           I V  +++  +  H  ++ + +    I            LK+ L     DD+ ++     
Sbjct: 367 IPVFIDEKRNVLHHPLVELIRSALEVITQHWAYDPVFRYLKTDLIPVQRDDVDRLENYVL 426

Query: 457 --------CTQRHETETVYEYIQKFANCGISKFQHVIKYIH------------------- 489
                        +     +Y               +  ++                   
Sbjct: 427 AHGIRGNRWNDNRDWTYRRQYTLGEDCDIDDNEAEQLAQLNVVRYAAIEHINNFSKKVAN 486

Query: 490 ---------ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRN 539
                     L  + +  S  +         +   + I    + ++ D +   L+  +  
Sbjct: 487 CGNVRQITTALFELLESLSVAERMEAWAKEAEVAGRLIEAKEHAQIWDNVILLLDEIVEA 546

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 +L+E +  LE    ++K        ++V + T+  ++        ++     V 
Sbjct: 547 MGEQELNLEEYLQVLEAGLESLKLGLIPPGLDQVVVGTLERSRNPNVKAALVLGISDGVL 606

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             + +++        D     +                    +    +   L+Y  +TRA
Sbjct: 607 PARPVEEGLFS----DYEREALREIGLNLAPGA---------RRKLFDEQYLIYTALTRA 653

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
           S +L +         K          V +     +          +  D       S   
Sbjct: 654 SSRLWLSYPQADDEGKALMPSPVIQRVKELLPLIQEEILPVEPPCLGGDLAFIANPSRSL 713

Query: 719 PENTPLEREETIKQLMD--EQKIPKKLFSPIKNDINEPYIL------------------- 757
                + RE    +L+D   Q +        +   +   +L                   
Sbjct: 714 SYLAAMLRETVAGRLVDPVWQDVYSWFVQQPQYQESCRRVLAGLYHVNQETSLPPSMGRR 773

Query: 758 --------NPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLL----QVIF 794
                   + S ++          LS                + G   H  L    + I 
Sbjct: 774 LYGSRLRASVSRLERFTTCPFSHFLSHGLKLKERSQFKLAAPDLGQFFHAALKLFAERIK 833

Query: 795 TLPEH-----------KRKNFITSYC--TKNAKLWPAKEYKNLLLSITRLLENP--MMTT 839
            L                   +       +N  L     ++ L+  + R LE     +  
Sbjct: 834 ALSLDWGQLSRGQIITITGEIVEELAPQLQNEILLSTARHRYLIKKLRRTLERAVVTLAE 893

Query: 840 AMSCDSYSEVSVSGKINCPKKDIIIS------------GRIDQI---SISQQNIF-IFEY 883
                S+  V+V        +   +             GRID+I       Q+ + + +Y
Sbjct: 894 HARRGSFRPVAVEIGFGDNAELPAVQLDLADHCQMEMAGRIDRIDSACEGGQHYYSLIDY 953

Query: 884 KTHHHVPQEIEHIPYTHIAQLSIY 907
           K+      ++  I +    QL  Y
Sbjct: 954 KSGQ-PDIKLADIVHGLKLQLLTY 976


>gi|164686809|ref|ZP_02210837.1| hypothetical protein CLOBAR_00405 [Clostridium bartlettii DSM
           16795]
 gi|164604199|gb|EDQ97664.1| hypothetical protein CLOBAR_00405 [Clostridium bartlettii DSM
           16795]
          Length = 502

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 19/123 (15%)

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               +L K  V+   +  I      + IDE QD      ++   +               
Sbjct: 139 LALSILSKSRVA---QQYIQARYFKLYIDEYQDCDQDMHKLFMYINTKL---------DI 186

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            LF VGD KQSIY + GA P+              N    F+  +L  +FR   DI    
Sbjct: 187 KLFIVGDPKQSIYQWRGAAPELFYEM-------FENNDNNFNKYQLVENFRCCKDIQNYS 239

Query: 275 DKV 277
           + +
Sbjct: 240 NLL 242


>gi|323483648|ref|ZP_08089032.1| ATP-dependent nuclease subunit B [Clostridium symbiosum WAL-14163]
 gi|323403075|gb|EGA95389.1| ATP-dependent nuclease subunit B [Clostridium symbiosum WAL-14163]
          Length = 1175

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 76/725 (10%), Positives = 192/725 (26%), Gaps = 135/725 (18%)

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +L          +    +ES  +    L Q  +     + IA  I  +I  +        
Sbjct: 291 ELQFIEKELFRFRGRKYEESSGAPGVVLFQSDTPLKEVQMIAGEIERLIKQE-------- 342

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              + +DI V+     D    +          +I    + +  +  +  ++ L A    +
Sbjct: 343 -KYRYRDIAVVTGALDD---YSREIVRQFETNRIPAFIDYKKNIMGNPMVELLRAALEVM 398

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY- 487
                  S    LK+ L    ++ + ++                 A   + +   +I   
Sbjct: 399 QKNFSYESMFRYLKTGLVTDKQEMLSRLENYALALGIRSFKRWDMAWEAVYRGAELINLE 458

Query: 488 -IHELIHI-------------AQFCSPHDFFTLI------LGAKKGRQQFISRFGNEVID 527
            ++                  ++  +  +    +      L  ++  Q + + F      
Sbjct: 459 ELNAFREEILTPLRPLKDVFGSRKSTVREKTEALVHFLEALHIEEKLQDYEAEFRETGEV 518

Query: 528 VLDE-----------FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIM 575
            L++             +       +     +E    L+     IK        + V + 
Sbjct: 519 SLEKEYSQVYGLVITLFDRITALLGDEAVGKKEYSDILDAGFEEIKVGLIPAVVDRVVVG 578

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            +   +     V+F       +      +            GI     +   ++  V   
Sbjct: 579 DITRTRLSHIKVLFFAGVNDGIVPSASGR-----------GGILTEAERRSLKSRQVELA 627

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
               ++   +     LY+ MT+ SD+L +   +++S+ K          V   F     +
Sbjct: 628 PTAREEGFLQ--RLYLYLVMTKPSDRLYLSYAASSSDGKSLRPSGLIGQVLKMFPEKRVM 685

Query: 696 KKIKLTNSI---------------------NKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           +  +   +                          ++         E    E  + ++   
Sbjct: 686 RADEKQMAAWSLPLGKRRVIEGLKDYGSSRQDSRFMELFGFFLRSELYRDELRQLVEASF 745

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRG 783
              +      +  K   +     + + ++                  E  + +    + G
Sbjct: 746 YTYEDRGIGRTAAKEIYSATLHGSVTRMEQYASCAYAHFLAYGLELSERPVYELAAADIG 805

Query: 784 LIIH----KLLQVIFT-------LPEHKRKNFITSYCTKNAKLW-----PAKEYKNLLLS 827
            + H       + +         + E  RK  ++   +   K +      +      L  
Sbjct: 806 NLFHGSIDLYFKRMKEENRSFREISEEDRKKLVSECVSDVTKDYGNTIMSSSARNQYLER 865

Query: 828 ITRLLENPMMTTA---MSCDSYSEVSVSGKINCPK------------KDIIISGRIDQ-- 870
             R + +  +      +    +         +               + I + GRID+  
Sbjct: 866 KVRRITDRTVWALTEQLKKGDFEPAGFEVTFSPADNLKAMKIPVSKEEAIHLKGRIDRID 925

Query: 871 ISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSLV- 921
           +      ++  I +YKT       +E     +  QL +  Y        +  +P+K +V 
Sbjct: 926 LCEDGDLLYLKIIDYKTGKTKFDLMEAY---YGLQLQLVVYMDAALEKEQRKHPDKKVVP 982

Query: 922 CLLIY 926
             + Y
Sbjct: 983 AGIFY 987


>gi|47094504|ref|ZP_00232176.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 4b
           H7858]
 gi|47017124|gb|EAL07985.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 4b
           H7858]
          Length = 118

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 14/102 (13%)

Query: 845 SYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTHHHV------P 890
              EV  S  +            + ++I G +D +   ++ I + +YKT           
Sbjct: 8   VKREVPFSYLLPVSELYEKVDIDERVLIQGVVDSMIEEEETITLIDYKTDKIEGRYSNWE 67

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
              + +   +  Q+ +Y K ++     K     L +     +
Sbjct: 68  AAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFFDGQHI 109


>gi|299138775|ref|ZP_07031953.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX8]
 gi|298599411|gb|EFI55571.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX8]
          Length = 898

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/648 (11%), Positives = 160/648 (24%), Gaps = 88/648 (13%)

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
               +L + + S              +    +  +     L   +A  I N +       
Sbjct: 190 PARTELLDAMRSVFVQHAMDVPLQLGAQRAIVQADDEQDEL-LALARWIRNFVEQRPSAR 248

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI-----SVVGNDRFILTDHLAIK 419
            G       KD   L        L   +         I         +    L+    I 
Sbjct: 249 VGVLLPDMEKDRAEL------ETLFREILAPELQQIGIDLSSTPYEFSSGKPLSSLPMIA 302

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFN----------FSEDDIFKICTQRHETETVYEY 469
             + L R+     +      +L SP             F   D+ +    R E +     
Sbjct: 303 AALDLARWTQGPLELGKVSALLLSPYLGTSGGQNQSAQFDAYDLRQAKLLRPEIDLPSLL 362

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN------ 523
                +   +     ++ ++      +       F       +G  +  +  G       
Sbjct: 363 YLAQQSSRGTAPLAWLQPLNAFFKRNENRGTPRGFADWAEFLRGLAKAANWPGERPLTGD 422

Query: 524 --EVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
             +     D  L+     +      S    +  LE+       A  +N   V++MT   A
Sbjct: 423 EFQATIAWDHLLDQMATLDFRGRRVSFSTALRTLERQANATLFAPPSNDAPVQVMTPANA 482

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
            G+    V         +         +   L    G+P       +     +       
Sbjct: 483 LGMTFDAVLFARATDANWPPVERSNPLLGWGLQASLGMPGTSQPRATERAQYALDRL--- 539

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
                         ++ +SD L      N   +++ +              D +    + 
Sbjct: 540 --------------LSSSSDVLFTYARENADGDQRLSPA--------IAELDWQQVAARD 577

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
            N  +       E       + P      ++      ++          +I         
Sbjct: 578 LNPASPAALQVTEEIVEDIASLPPLPSSNVRGGARVLQLQAACGFRAFAEIRL------- 630

Query: 761 TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR------KNFITSYCTKNAK 814
                G T LE+  +       G ++H  +   +   + +       ++       +   
Sbjct: 631 -----GATELEASDAGFDARENGSLLHGAMSRFWEEVQSQSALQAMSRDARAQLLGRCID 685

Query: 815 LWPAKEY--KNLLLSITRLLENPMMTTAMSCDSYSEVS--------VSGKINCPKKDIII 864
               K+   +         L+   +   +      E+         +          + +
Sbjct: 686 QALDKDLNIQGRWDEAYVALQKERLQRVLLQWLDKEMERGPFTVQYIEHDELIDIGPLDL 745

Query: 865 SGRIDQISISQQNIFIFEYKTHHH--VPQEIEHIPYTHIAQLSIYEKI 910
             RID++ I +  +F+ +YKT +       +   P     QL +Y  +
Sbjct: 746 KLRIDRLDIVEGGVFLVDYKTSYSSDPKNWLGERPDE--PQLPLYALL 791


>gi|229195441|ref|ZP_04322209.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1293]
 gi|228587981|gb|EEK46031.1| ATP-dependent nuclease, subunit B [Bacillus cereus m1293]
          Length = 1166

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFNGEASVTIHTAANLRAEVEGVAREIRRLVADE---------DYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTDGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 582 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 637

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 638 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSTVVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|187928126|ref|YP_001898613.1| hypothetical protein Rpic_1033 [Ralstonia pickettii 12J]
 gi|187725016|gb|ACD26181.1| conserved hypothetical protein [Ralstonia pickettii 12J]
          Length = 951

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 62/624 (9%), Positives = 153/624 (24%), Gaps = 102/624 (16%)

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
           W +  +   +  +       +    +   +     A   A+T+ + +             
Sbjct: 269 WPECATAAQAADDGADARMQAPILRIAGATRFEDEAAFAAHTLVDWLNAGRRSLALV--- 325

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
                            ++    R L     + V     + L+   A   LM     +  
Sbjct: 326 -------------AQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWVDVVQG 372

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ------------------- 471
             D  + + ++KSP      D          E E                          
Sbjct: 373 DGDTAALLDLVKSPFCLRDADAGTATPAWVAELERRVRRHNVSGGWGRLRRLVADRPAND 432

Query: 472 ----KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
                     +S+    +  + +   + +          +        +   R G +  D
Sbjct: 433 ADADADGEAKVSRLADRLGVLADEAALWRRVGSATLDAWVTLLAGTLDRLHMRTGLQNDD 492

Query: 528 VLDEFLNFTLRN--------EQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTV 577
              + L++  R         +  +  SL E  + L                   V I+ +
Sbjct: 493 AGRQLLDWIDRLRASIHGSTDAGARFSLTEWRALLSMLLESAVFSEPSPPADRRVVILPL 552

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           + A+      V +V            + +     +  + G+P                  
Sbjct: 553 NGARMRRFDGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPD------------RAQRF 600

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
             +     E              ++++    +    +      W + +            
Sbjct: 601 AQQARDLAEVLL--------NQPEVVLTWQRHGGRGEPHRLSGWLERLQRRLAVCGVRID 652

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
             +          + + ++             +   +           P +  +     L
Sbjct: 653 TSVVL-------PSLQTTSQPAGMPAPAAPVLVPSTLSAAAYNSLRRCPYQFFVGRMLRL 705

Query: 758 NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-------IFTLPEHKRKNFITSYCT 810
                       LE +  + +  + G I+H +L         +       R+  + +   
Sbjct: 706 ----------GELEEVSDELEKRDIGEILHAILHRFHRQLLEVPMHDPADRQALLQAITD 755

Query: 811 KNAKLWPAKEYKNL--LLSITRLLEN-PMMTTAMSCDSYS----EVSVSGKINCPKK-DI 862
           +      A++   L        ++ +      A   D +     EV V   I    +  +
Sbjct: 756 EQFGPLLAEDGNALRFYRRWLGVMPSYLAWQAAREADGWRFEAGEVDVDTSITLRDERPL 815

Query: 863 IISGRIDQISISQQ-NIFIFEYKT 885
            + GRID+I +  +  + + +YKT
Sbjct: 816 RLRGRIDRIDVHDEHGVAVLDYKT 839


>gi|42780318|ref|NP_977565.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10987]
 gi|81410612|sp|Q73C24|ADDB_BACC1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|42736237|gb|AAS40173.1| ATP-dependent nuclease, subunit B [Bacillus cereus ATCC 10987]
          Length = 1171

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTIHTAANLRAEVEGVAREIRRLVADE---------DYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|167462548|ref|ZP_02327637.1| DNA helicase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 120

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 13/104 (12%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y++   +  ++ +ED++    ++L        I   I  +  +  IDE QDT+ +Q E+I
Sbjct: 11  YKKMFWEKGIIHYEDVLAFAWEILNSS---KEILRIIRSKFPYFFIDEFQDTNPVQTEII 67

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           + + E   V          +  +GD+ QSIY F GA+ K+    
Sbjct: 68  KLIAEKETV----------MGVIGDKAQSIYEFQGADVKQFDNF 101


>gi|86151958|ref|ZP_01070171.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85841066|gb|EAQ58315.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 788

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 71/564 (12%), Positives = 168/564 (29%), Gaps = 67/564 (11%)

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             ++  +   +   K  +++ ++  L         I+   R       I V+  D     
Sbjct: 221 QEILKEEIFKTKNSKIKLKSFELRALQCT-FVMDEISHFVRKGLKPENIVVITPD-ESFC 278

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
           + L + D   +     +    +S    L    F    +            E  +E  Q  
Sbjct: 279 EFLRLFDKDNML----NFASGISIKESLFYQKFQALYESASSASFVYKNQEDYFEDTQMI 334

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
            +   +    +     E           ++F  +L          +     +  +  E  
Sbjct: 335 FDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLALF-----LENEKQELIYLIRKELY 389

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
            F     +N   +L+ELI  L     +          +V +M +  ++GL    V LVD 
Sbjct: 390 -FIKDLLKNQSLTLKELI-HLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDF 447

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
             +    + + ++ +   +    G+  +  +   +                    R  Y 
Sbjct: 448 NEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQ--------------------RFYYE 487

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            + + + ++ IC   N    K           +   H  ++     L       +     
Sbjct: 488 SLMKNALEVSICFVENEEKSKSRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTP 547

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                 ++ P E   +  +    +   +  +     ++ EP +L+               
Sbjct: 548 IKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLS--------------- 592

Query: 774 LSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCTKNAKL--WPAKEYKNLLLSIT 829
             +++  N+G  IHK+L++     +          +   K  +       + +   L   
Sbjct: 593 -EESKAKNQGNFIHKMLEIYYKNYVNNDFDIKVFANLLDKEYQKYNISELDLEVFKLKFI 651

Query: 830 RLLENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
           +  +N       S     +++E+ ++  +      I + G ID+I  S++   I +YK+ 
Sbjct: 652 QFAKNE--KEHFSKGFYVAHTELELNNILKLGADSIKLKGTIDRIDSSKEGNLIIDYKSG 709

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKI 910
                           QL+ Y+ +
Sbjct: 710 KVSSNSY---------QLAFYQAL 724


>gi|256372491|ref|YP_003110315.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256009075|gb|ACU54642.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 593

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 81/259 (31%), Gaps = 26/259 (10%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTY--KMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           K  P + E     +     +    +       +    +    +       E +++  V+D
Sbjct: 105 KALPPVVESETLVRAALPNLSPAEHAAVRAALRGQRPTSPAHEAHVRAVHELRRRRRVID 164

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            + ++      L+++     +       I  + +DE QD++  Q  + R+L      G  
Sbjct: 165 LDSIVGELARQLERQPERRGLI-----GIEALFVDEFQDSTPDQLRLFRALLGPDLAG-- 217

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                  L  VGD  QSIY ++GA+P  +   +                + L  ++RS  
Sbjct: 218 -------LTVVGDPNQSIYGWNGADPNVLTDLE----------PPGLRTVTLTTNYRSRD 260

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
           +++    ++     + +G             +   +     + E                
Sbjct: 261 ELVRHATRILDPQPHVRGARPGGRPPTLRGYATPEREARALVRELGGLHALGVAWRAMAV 320

Query: 329 WTSYFDSLPQESSASILAR 347
            +    +L   ++A   A 
Sbjct: 321 LSRTTRALEPVTAALEAAE 339



 Score = 43.0 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 35/121 (28%)

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           ++L  +   +++  +   + V I T H AKGLE   V ++  G +   H   +       
Sbjct: 406 ADLATFQEILEQRLARRLDAVTIATFHKAKGLEWYHVHVLGVGERALPHPRARTS----- 460

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                         + +EE  RLLYV MTRA+D L +  H    
Sbjct: 461 ------------------------------AQREEERRLLYVAMTRATDSLSVSWHGGGP 490

Query: 672 N 672
           +
Sbjct: 491 S 491


>gi|120611845|ref|YP_971523.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120590309|gb|ABM33749.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
          Length = 603

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 101/323 (31%), Gaps = 40/323 (12%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
              +     P          +     +           + ++     +     F  +   
Sbjct: 35  AAEVAVAARPGQEILFLSFARATISRVMEAIENEHDIPRHIRARITVETYHSFFWRILKT 94

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
                  P+K  I    N+        +++      K+ D   + K  + +   L LA  
Sbjct: 95  HGYLLGLPRKLSILTPANEAI--ALSTIRREYKPASKLTDEERSQKKGRESKERLRLAT- 151

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                     ++  + F+        LL + +    +R  +      I++DE QDT+  Q
Sbjct: 152 ----------EDGRVCFDLFASLVARLLSRSE---RLRKLVATRYPFIILDEFQDTNSDQ 198

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           W V++ L               TL A+ D +Q IY + GA+P+R+ +   +         
Sbjct: 199 WAVVQQL-----------GRTSTLLALADPEQRIYDWIGADPERLNQFLGVF-------- 239

Query: 253 QKFSIIELP-LSFRSTA-DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
            K   I L   + RS+  DIL   ++V +   + +           + ++       V L
Sbjct: 240 -KAQEIPLAGDNHRSSGTDILLFANEVLTGKFSRKAGGYTGIELKGYPANENEA--AVAL 296

Query: 311 WEQVVSQHDSQCNPQQESWTSYF 333
                +        ++  W+   
Sbjct: 297 ITTTYAARKRLVALKKADWSLAV 319


>gi|260431945|ref|ZP_05785916.1| double-strand break repair protein AddB [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415773|gb|EEX09032.1| double-strand break repair protein AddB [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 975

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 66/544 (12%), Positives = 141/544 (25%), Gaps = 58/544 (10%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            ++T       + + I    +    L      + L  +      + D  + + +LK PL 
Sbjct: 356 RMLTRQVSAALDRWNILPDDSAGLPLQLSPPGRFLRHVAGLFAHRLDAEALLTLLKHPLC 415

Query: 447 NFSEDDIFKICTQRH-------ETETVYEYIQKFANCGISKFQHVIKY--IHELIHIA-- 495
           + + D    +   R              +                     I         
Sbjct: 416 HSAGDRGAHLLHSRDLELHLRRNGPPFPDSASLSGFAVEKDVPDTWARWLIRNFCDRQIS 475

Query: 496 -------QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
                        D    I GA  G    +          L    +     E     +  
Sbjct: 476 GTLPLTDWVQRLRDLAEAIAGAGTGDAGELWDKNA-GQAALAVISDLADEAEHGGEMTAL 534

Query: 549 ELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           +    L         R   A H  + I     A+   + ++ L       +         
Sbjct: 535 DFADLLGALLAGQEVRDRDAPHPRIMIWGTLEARVQGADLLILGGLNEGSWPEAPAPDPW 594

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           +   + D  G+ +   +     +     I   +            V +TRA         
Sbjct: 595 LNRQMRDRAGLLLPERRIGLSAHDFQQAIGAPE------------VWLTRAVR------- 635

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
              S++ ++    W + + +                +         WS    +   +   
Sbjct: 636 ---SDDAETVPSRWLNRLTNLLQGLPDQGGRAALEQMRDRGKTWLRWSEMLEQAPRIAAA 692

Query: 728 ETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
                       P++L  + IK  I +PY +    I       L+ L+       RG++I
Sbjct: 693 PRPSPRPPVAARPRRLSVTEIKKLIRDPYAIYAKHI--LRLKPLDPLVQAPDALLRGIVI 750

Query: 787 HKLLQVI--------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
           H++L+            L          +   ++     A   K  L  + R+ ++ +  
Sbjct: 751 HEILEHFVKDSVLDGALLTRDNFLKRAEALLDQHVAWPTA--RKLWLARLERIADDFLRA 808

Query: 839 TAMSCDSYSEVSVS--GKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEH 895
                     ++     ++        ++GR D+I   S+  + I +YKT     +  + 
Sbjct: 809 EITRRSDGGPIAFEAKMRLTLEPLGFTLNGRADRIDRNSRGALTIIDYKTGAPPSESQQA 868

Query: 896 IPYT 899
               
Sbjct: 869 KFDK 872


>gi|324325257|gb|ADY20517.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 1171

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTIHTAANLRAEVEGVAREIRRLVADE---------DYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTNGMMTD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587 DQVLIANIDRSRLSNVKATFIIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|301321588|gb|ADK68978.1| Superfamily I DNA and RNA helicase [Gordonia sp. KTR9]
          Length = 1067

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 76/544 (13%), Positives = 150/544 (27%), Gaps = 126/544 (23%)

Query: 179  HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            +++IDEVQD S  Q+          +  +        L+ VGD  Q++Y F  A PK + 
Sbjct: 613  YLIIDEVQDNSAFQF---------VYAMRYAAKHQCALYMVGDASQTLYEFRAANPKALS 663

Query: 239  REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
              +             F++ +L  ++RS  +IL   +   S  E  +           + 
Sbjct: 664  ALEA---------SGVFTVCKLSTNYRSAQEILDFANIHLSDIEANRFTKIQLQANSVNA 714

Query: 299  SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
            S+      +V+L  +      +                                +     
Sbjct: 715  STADSFTKSVRLISKSCGTQRAFDQN----------------------------LKQYFR 746

Query: 359  TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             D +       +   +  +VL + R+   +   +   L  D  +  + +DR         
Sbjct: 747  GDELKKYFTDNLAARETTVVLCQTRRHAKMAQEVLVELFPDEAVHNLVSDR--------A 798

Query: 419  KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
              +     FI    D ++ V    +P   F+     ++     E        +   +  +
Sbjct: 799  YSMKTFSTFIARYWDQVTCVEPAVAP---FTFHQQIRLQIGSLEPRNTEVAERILDDALV 855

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
              ++         + +       D                        D         L 
Sbjct: 856  DWWRETNSVCQAWLQMVASGMMTD-----------------------ADFFLHLRKSILD 892

Query: 539  NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
             E  + +    L     Q     K   +A   ++ + TVH  KG+E   V +V       
Sbjct: 893  YEIRNNAIRNSLTG---QKNAVRKEEMAARDPKLMVSTVHGVKGMEFDHVVVV------- 942

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                                  +       E Y RLLYV +TRA
Sbjct: 943  -----------------------------------LQPETSSTRKDESYKRLLYVALTRA 967

Query: 659  S-DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
              D++I+   S      +++     + +      D      +  + +   E    +    
Sbjct: 968  KIDEVILAGVSTAKPRIETDYEAVVEALRRREIEDAAASDDQSIDIVEVPEGAVADTVDP 1027

Query: 718  HPEN 721
             P+ 
Sbjct: 1028 TPDA 1031


>gi|259507243|ref|ZP_05750143.1| RecB family exonuclease [Corynebacterium efficiens YS-314]
 gi|259165186|gb|EEW49740.1| RecB family exonuclease [Corynebacterium efficiens YS-314]
          Length = 287

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 34/236 (14%)

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFT 795
            +P  +    P  L+PS      +  L                   +G ++H +L+ +  
Sbjct: 11  TAPAPDRKPRPLALSPSRAGDYQQCPLLYRLRAIDRLPEPKTVAQVKGTLVHAVLEEMHR 70

Query: 796 LPEHKR--KNFITSYCTKNAKL-WPAKEYKNLL--LSITRLLEN--PMMTTAMS------ 842
           LP  +R     +       A++     +   L+    +   L     ++           
Sbjct: 71  LPRDQRDYPAMVKRLKPHWAQMCAEDPDLNELVPGDQLYDFLVECRTLLRGYFEMENPQG 130

Query: 843 -CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900
              S  E+ V   +      + + G ID++  +    I + +YKT      +        
Sbjct: 131 FDASDVEMYVDTVLP---NGVPVRGFIDRVDTAPTGEIRVVDYKTGKKPKPQWSQQA--- 184

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ-----NKLNKAFAEISTKI 951
             Q+  Y  +    +        L+Y+       +           +   ++  +I
Sbjct: 185 QFQMLFYALVYWRLFDQIPAQLRLMYLKVNDSMFLTPSREQLEYFERDLGDLWARI 240


>gi|256060065|ref|ZP_05450247.1| hypothetical protein Bneo5_06871 [Brucella neotomae 5K33]
 gi|261324042|ref|ZP_05963239.1| double-strand break repair protein AddB [Brucella neotomae 5K33]
 gi|261300022|gb|EEY03519.1| double-strand break repair protein AddB [Brucella neotomae 5K33]
          Length = 1052

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGRFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|206976601|ref|ZP_03237507.1| ATP-dependent nuclease, subunit B [Bacillus cereus H3081.97]
 gi|217958718|ref|YP_002337266.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH187]
 gi|222094862|ref|YP_002528922.1| ATP-dependent nuclease, subunit b [Bacillus cereus Q1]
 gi|251764582|sp|B7HZR4|ADDB_BACC7 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764584|sp|B9ITE8|ADDB_BACCQ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|206745284|gb|EDZ56685.1| ATP-dependent nuclease, subunit B [Bacillus cereus H3081.97]
 gi|217064274|gb|ACJ78524.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH187]
 gi|221238920|gb|ACM11630.1| ATP-dependent nuclease, subunit B [Bacillus cereus Q1]
          Length = 1171

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 299 EARPNEKFNGEASVTIHTAANLRAEVEGVAREIRRLVADE---------NYRYRDIAVLL 349

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 350 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 406

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 407 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTDGMITD 466

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 467 SEREMEEKINRLRGVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 526

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 527 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 586

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 587 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 642

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 643 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 693

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 694 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 753

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 754 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 813

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 814 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 873

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 874 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 933

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 934 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 991


>gi|229137927|ref|ZP_04266526.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST26]
 gi|228645584|gb|EEL01817.1| ATP-dependent nuclease, subunit B [Bacillus cereus BDRD-ST26]
          Length = 1166

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 72/719 (10%), Positives = 198/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFNGEASVTIHTAANLRAEVEGVAREIRRLVADE---------NYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTDGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 462 SEREMEEKINRLRGVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 582 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 637

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 638 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 ---------------------------FSPIKNDINEPYILNPSTIDTKGKTN------- 769
                                       +  ++   +    + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSTAVSRDLYGDKIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSAVVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|329946807|ref|ZP_08294219.1| hypothetical protein HMPREF9056_02122 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526618|gb|EGF53631.1| hypothetical protein HMPREF9056_02122 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 261

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 58/194 (29%), Gaps = 22/194 (11%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRK-NFITSYC------------TKNAKLWPAK 819
               +   ++G ++H +L+ ++ LP  +R+                              
Sbjct: 16  PEPGSLATHKGTVVHGVLERLYDLPVSERRVEVALELLPGQWESHREKSPEVMGLFEDPT 75

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP-KKDIIISGRIDQISISQQNI 878
           + +  L     L+      T  +            +       +++ G +D++ ++    
Sbjct: 76  QVETWLEEARGLIRT--YFTLENPQRLEPAERELFVQAETSDGLLLRGFVDRLDVAPDGA 133

Query: 879 -FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
             + +YKT               + Q+  Y  +L            L+Y+ + +V  +  
Sbjct: 134 MRVVDYKTGRSPGT---RFVEEALFQMRFYALVLWRLRGRAPTRLQLVYLKDGRV--LTH 188

Query: 938 NKLNKAFAEISTKI 951
           +          T++
Sbjct: 189 DPRLAELERTETRL 202


>gi|323448100|gb|EGB04003.1| hypothetical protein AURANDRAFT_67568 [Aureococcus anophagefferens]
          Length = 1534

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 31/219 (14%)

Query: 111 RDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIR 170
           R +     +      +  +A+ + A       +    DF+D+I     LL+      +  
Sbjct: 752 RVKREWPVLASRIAEARRMARRVFAE-SVRLCEAGRFDFDDMIFAPL-LLRGGGAGVF-- 807

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                    + +DE QD+S ++  + R L                L  VGD+ Q+I +F 
Sbjct: 808 ----GTFEFVFVDEAQDSSRLRRHLYRKLLA----------PGGRLLVVGDDNQAINAFA 853

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+   + R          N+       +L   +R    ++ + +       +     +D
Sbjct: 854 GADHGAIERFVE------ENSDLAAPRFKLTTCYRCAEAVIDLAN-------DHLRKVDD 900

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           +   I  R       G V+      S+   Q        
Sbjct: 901 AADPIMMRPRTDAPEGRVERDVTFSSRPLPQEAGDTVVL 939


>gi|300704440|ref|YP_003746043.1| helicase, c_term recb family exonuclease [Ralstonia solanacearum
           CFBP2957]
 gi|299072104|emb|CBJ43436.1| putative helicase, C_term RecB family exonuclease [Ralstonia
           solanacearum CFBP2957]
          Length = 963

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/556 (10%), Positives = 137/556 (24%), Gaps = 91/556 (16%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
               ++    R L     + V     + L+   A   LM     +    D  + + +LKS
Sbjct: 329 AQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWLDVVQGDGDTAALLDLLKS 388

Query: 444 PLF---------------------------NFSEDDIFKICTQRHETETVYEYIQK-FAN 475
           P                             +     + ++  QR       +      A 
Sbjct: 389 PFCLREADAPSSVAPDWVAELERRVRRRNVSGGWGRLRRLVAQRDTDAEGADASDATDAG 448

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
               +    +  + +   + +          +        +   R G +  D   + L++
Sbjct: 449 PLAGRLAERLGLLADEAALWRRAGHATLEAWVTLLAGTLDRLRMRAGLQSDDAGRQLLDW 508

Query: 536 TLR--------NEQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             R         +  +  SLQE  + L                   V I+ ++ A+    
Sbjct: 509 LDRLRVSVHGGADAGARFSLQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRF 568

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V +V            + +     +  + G+P                    +     
Sbjct: 569 DGVVVVGCDDAQLPSAQPEWLFFSNDVRRELGLPD------------RAQRFAQQARDLA 616

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E              ++++    +    + +    W + +              +     
Sbjct: 617 EVLL--------NQPEVVLTWQRHGGRGEPNRLSGWLERLQRRLAVAGMRIDAPVVL--- 665

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                A + ++   +         +   +           P +  +     L        
Sbjct: 666 ----PALQTASRPTDMPAPAAPALVPATLSAAAYNSLRRCPYQFFVGRMLRL-------- 713

Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPA 818
               L  +  + +  + G ++H +L                 R   + S   +      A
Sbjct: 714 --GELGEVSDELEKRDVGELLHAILHRFHRQLLDTPMADPADRLALLQSLTDERFGSLLA 771

Query: 819 KE--YKNLLLSITRLLEN-PMMTTAMSCDSYS----EVSVSGKINCPKKDII-ISGRIDQ 870
           ++            ++ +      A     +     EV     I  P    + + GRID+
Sbjct: 772 EDGHALRFYRRWQNVMPSYLAWQAAREAQGWRFEAGEVDADTSIALPGGQALRLRGRIDR 831

Query: 871 ISISQQ-NIFIFEYKT 885
           I    +  + + +YKT
Sbjct: 832 IDTHPEHGVAVLDYKT 847


>gi|308184160|ref|YP_003928293.1| hypothetical protein HPSJM_01900 [Helicobacter pylori SJM180]
 gi|308060080|gb|ADO01976.1| hypothetical protein HPSJM_01900 [Helicobacter pylori SJM180]
          Length = 778

 Score = 80.4 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/472 (12%), Positives = 128/472 (27%), Gaps = 82/472 (17%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLQKSGFDLSASPL----LDLESLTLALLEQQSSKEKAPLKEVHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   V +VD     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDEVVIVDFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L K+ K         L Y+    
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EITLSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++    H +       L       ++   E    
Sbjct: 480 ----------------ESETSKASSMLLELDLHTEPIKDAYTLFAPTPLKDYQEEEIKAA 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++                 +   L    +   +       S  D              
Sbjct: 524 IPKDFSF----------SASSLNAFLTCKRRFYYHYMKRFKESPKDENNS---------- 563

Query: 778 QTFNRGLIIHKLL-QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN---LLLSITRLLE 833
                G ++H+LL +                +  +  +    KE  +    L  I     
Sbjct: 564 ---AVGSLLHELLKEAYEKDKNPYVLEERLIWLLETRENITPKERLDTLIALKKIQAFYT 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYK-------- 884
                   +      + +        + +I  GRID+I  +    I + +YK        
Sbjct: 621 KE--KERFNTKIKI-LDLEKSFETIIQGVIFKGRIDRIDKTADNEIILLDYKFKNDLKLD 677

Query: 885 ----THH--HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
               T      P EI  I   +  Q++IY   LK+      +      + + 
Sbjct: 678 NMSKTQREGLSPIEIAQISTDY--QMTIYACALKNLGYKGPIKAFFYDLRKG 727


>gi|303327782|ref|ZP_07358222.1| DNA helicase [Desulfovibrio sp. 3_1_syn3]
 gi|302862143|gb|EFL85077.1| DNA helicase [Desulfovibrio sp. 3_1_syn3]
          Length = 633

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 81/553 (14%), Positives = 160/553 (28%), Gaps = 91/553 (16%)

Query: 136 HYEEAKK-KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
            Y+E  + +  ++  +++I+  N + +K      I   I  +   I +DE QDT   Q E
Sbjct: 119 QYKEVLRLQEGIISHDEVILLANLMFEKYSKLCDI---IKDKYRFIFVDEYQDT---QIE 172

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           VI  L        +       +   GD  Q+IY     +    L                
Sbjct: 173 VINILLRHA----SQSKKKNIIGFFGDSMQAIYDKRVGDLNDYLSA------------GT 216

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              ++L  + R+   ++ + +K+ +         +     +  ++    + GT       
Sbjct: 217 VHEVKLEQNRRNPQAVIELANKLRTDNIIQHPSDQIDAPNMDTKTG-AVKPGTATFLYSS 275

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY-TISNMIGTDTIFSNGKKRVIQA 373
            S  D   N  +  ++    +     + +++A +  + T+  +   D I    K+     
Sbjct: 276 SSSLDLVRNFLRWDFSDALKTKELNLTHNLIADKANFPTLMEIYDKDKILDYRKRVKDFL 335

Query: 374 KDILVLVRKRKDTPLITFLT----------RFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
           +D  +  R          +           + L     +    N+   L +     D + 
Sbjct: 336 RDNGIE-RDIYAGKTFGEVLDDLQTKFPKNKKLLPTAGMQEYINEHSDLFEAAKSYDFLE 394

Query: 424 LGRFILSQED--DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
             +  + ++   D              S D + K   +     ++YE         I+ F
Sbjct: 395 FFKIYIDKDHLIDDKKQTPEVEAKKGSSRDALIKHLFKIQNIISLYESRNFSQFLKITDF 454

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ-----QFISRFGNE-VIDVLDEFLNF 535
           +        +   +     HD    IL  + G+                  D L  F+  
Sbjct: 455 K--------IAKASDKKVLHDHIQKILNTESGKTIGEVIDLAHTLRLCLKGDALRRFVEK 506

Query: 536 TL----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
                 R  Q  Y+    L   LE               +    T H  KG E   V +V
Sbjct: 507 NRYIYDRVSQVPYAEFLSLYRYLE--------------GQTPFSTQHKTKGDEFDNVLVV 552

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
              +  +S  +  K+                                      E   ++ 
Sbjct: 553 -MDNGKWSQYNFDKLFSELGNPGSSPT--------------------NDAGILERTRKIF 591

Query: 652 YVGMTRASDQLII 664
           YV  TR+ + L I
Sbjct: 592 YVCCTRSRENLAI 604


>gi|222528077|ref|YP_002571959.1| LexA repressor [Caldicellulosiruptor bescii DSM 6725]
 gi|222454924|gb|ACM59186.1| LexA repressor [Caldicellulosiruptor bescii DSM 6725]
          Length = 819

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 121/410 (29%), Gaps = 71/410 (17%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y    K+N ++DF+D+ +   D LK  +           +  HI+IDE QD + +
Sbjct: 202 ELMQLYTSLLKENGLVDFKDMALIVLDYLKANEHKIT-------KYTHIIIDESQDLTKV 254

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E+++ L        +       +  + D  QSIY+             R     +   
Sbjct: 255 QLEILKLLYNSEKSYSS-------IMFIADTAQSIYT--------HSWLIRGRSFASIGF 299

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++R+T  I  +   +                                  
Sbjct: 300 DMTGKSYTLSKNYRTTVQIANLAYSLIEKTPE---------------------------- 331

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              + + ++   P           L    +    A  +   I N +  +           
Sbjct: 332 ---IIEDENFVKPALIDKQGPLPVLKIFQTEEQEAEFVYNEIVNNLAFE----------F 378

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           Q KDI V+ + RK                 I +  +      +       M   + +  +
Sbjct: 379 QLKDIAVICKNRKYLESFYNYVSSKGLKA-IFLNSDSGENFEEEGIRLITMHSIKGLEFK 437

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY---EYIQKFANCGISKFQHVIKYI 488
              +  +     P  +  ++++ K+     +           ++   C   K    +  +
Sbjct: 438 VVFIIGLNSNIIPYSSCEDNEVAKLQETTDKKLFYVGMTRANERLYLCCSRKPSKFLSEL 497

Query: 489 H-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
           + +L+ I   C+   F+ L +   +   +    +  E      +++E + 
Sbjct: 498 NTKLLRIDSKCNLRSFYKLRIDDYRYINKIRDIYCKEEEVRQWLINELIE 547


>gi|146279543|ref|YP_001169701.1| hypothetical protein Rsph17025_3526 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557784|gb|ABP72396.1| hypothetical protein Rsph17025_3526 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 617

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 82/686 (11%), Positives = 178/686 (25%), Gaps = 144/686 (20%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++  L  K  + L         + +++S +         A+ +++    +     
Sbjct: 37  GAGAGKTEFLAQKAAYLLQTGLCPAPKRILAISFKRDAAA--TLAERVKRRCAPEQARRF 94

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSP-----DLKEKLKKSQDEFIKIRDRFNTYKMF 120
            S+    F        +  +       +         + +        +       ++  
Sbjct: 95  ISVTFDAFSKGLIDQFRKALPDAYRPPANYRIGFPTTDSVNDFLRRHNRHGVNSTQFQNA 154

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLD----FED------LIINTNDLLKKRDVSAWIR 170
                 L   + +N    EA +     D    +++      +I    + L + +    +R
Sbjct: 155 LIRRRLLDGGQEVNDE-TEALRDAYWRDQYQYYDEPVLTFPMINRLAEYLIRTNHR--VR 211

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
             +      + +DE QDT   Q+E+++              +   L AVGD+KQ I  + 
Sbjct: 212 RAVRLSYPVVFLDEFQDTQASQFEILQR---------AFDGAATVLTAVGDDKQKIMGWA 262

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA P      +     RA         I L L++RS A+++  +  V +         + 
Sbjct: 263 GAMPNAFRVFRDQYNARA---------ISLLLNWRSHAELV-AIQHVIASN------IDP 306

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
               +  R  R  +     +WE    + +     +         +   + +  + A+   
Sbjct: 307 DVEPVVARGQRNVEGDVSAIWEFADEEAEITVISEWIEGQVANGTAAHDIAILVRAKADR 366

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I                + +   IL  + +      I  L         + V+     
Sbjct: 367 VEIE-----------LGPALAERGLILRNLARNVGEISIEDLLSEEFTKILVPVLRLATS 415

Query: 411 ILTDHLAIKDLMALGRF-ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
                     L    R   +S EDD     +                             
Sbjct: 416 KRHPEAWSTTLENFSRLYAVSPEDDDQLQRL----------------------------- 446

Query: 470 IQKFANCGISKFQHVIKYIHELIHI--AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
                     + Q +++ +   +        +P+    L++      +  I R       
Sbjct: 447 --------NDRVQSIVRRLRAFLSEHAVTATNPNQISDLLIEEID--EALIRRSTPAYQR 496

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
             D                L    S  E     +        N++ ++TVH +KG+E   
Sbjct: 497 DADYLR-------VKQGFDLLLAESMNEADDWCVVLDRFEGRNQIPLLTVHKSKGMEFHT 549

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           +      S+ +                                             ++E 
Sbjct: 550 MIFFGFDSRTWWSLTP---------------------------------------DKDEE 570

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNE 673
               +V  TRA  +            
Sbjct: 571 KNSFFVAFTRARQRAFFTSCLRRGGR 596


>gi|213400877|gb|ACJ47087.1| hypothetical protein [Wolbachia endosymbiont of Litomosoides
           sigmodontis]
          Length = 157

 Score = 80.4 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 9/149 (6%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++       N  + +   +L  SFRST +ILT+VD++F+     +       
Sbjct: 1   NPHLFNHMQQYF--HIKNGDRDWISYQLEKSFRSTPEILTLVDRLFNN---FREEISFVN 55

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
           + I+H   R    G +++W  +    + +    Q       D +  +    +LA+ IA+ 
Sbjct: 56  SEIKHVPYRENDQGYIEIWPLLPKCKEEEQQALQIHLMHKKDYIIID---RLLAQAIAHK 112

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
           I N +    I    K R I+ +DI++LVR
Sbjct: 113 IHNWLNEGRIL-VAKDRHIEPRDIMILVR 140


>gi|330506916|ref|YP_004383344.1| hypothetical protein MCON_0714 [Methanosaeta concilii GP-6]
 gi|328927724|gb|AEB67526.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 598

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 104/367 (28%), Gaps = 41/367 (11%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS-LIQWEVIRSLT 200
           +K   +   D    ++ +L   +    +   + +    IL+DE QDT+  +   +I  L 
Sbjct: 179 RKRGRITHSDCQYISSLILCHPEFGKKVSELVTRRFPMILVDEFQDTNWFLGLALIELLR 238

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
             F               VGD  Q+I+ F GA P      + +              + L
Sbjct: 239 SPFLESG---------LVVGDPDQAIFEFGGANPDLFKDIENL---------PGAKSLPL 280

Query: 261 PLSFRSTADILTVVDKVF---SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
             + R    I  +   +              + S   + H   +I +   V        +
Sbjct: 281 NQTHRCPKKIAAIATALSDTGKQVLPRDNADQGSAIILVHDMEKIDRNKKVIANISKFCE 340

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
            + Q         +    L +  S+          I N +       +     I  +++ 
Sbjct: 341 EEDQLAIISRRELTLRTFLGESISSFRGVSHSGKNIENAVQMLRSDQSKVASHIVERELA 400

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR-FILSQEDDLS 436
            ++ K     +     R L  D                   + +  + +   + ++D+  
Sbjct: 401 WILFKNDSPSMND--LRDLDVDLI--------------KWRRIIYQILKEASIDKKDETW 444

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
              +L+  +     D    +  +  +        Q      + K    ++    LI  A 
Sbjct: 445 NEWLLR--IRKLILDSALDLNCEFDKRRISDNLKQNLKGNVLRKMAEHLESSDSLIERAT 502

Query: 497 FCSPHDF 503
             + H  
Sbjct: 503 IKTIHQV 509


>gi|126662604|ref|ZP_01733603.1| hypothetical protein FBBAL38_04595 [Flavobacteria bacterium BAL38]
 gi|126625983|gb|EAZ96672.1| hypothetical protein FBBAL38_04595 [Flavobacteria bacterium BAL38]
          Length = 925

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/535 (11%), Positives = 143/535 (26%), Gaps = 86/535 (16%)

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +L  PL       +  +          +   QK  +    K+ +      +L+      +
Sbjct: 374 VLNHPLVE-PYCKVNDVVNVIQNNNFTFFSNQKLFSLYDEKYPNSENKFFQLLFTRWDDA 432

Query: 500 PHDFFTLI----------LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQ 548
             D    +          L      ++    F   V   +++  N+     Q  S  SLQ
Sbjct: 433 ISDILANLNAILLTIKSYLSNDDDEEKVTKAFVYSVFKTINKLTNYHETYNQIESLPSLQ 492

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            +  ++               + +++M V  ++ L+   V +       F     +   I
Sbjct: 493 AIYKQI--IDLAEVSFEGEPLSGLQVMGVLESRVLDFENVIITSVNEGKFPAGKSQNSFI 550

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
              +  + G+P +                         Y    Y  + RA + + +  ++
Sbjct: 551 PYDVKKELGLPTYK-------------------EKDAIYCYHFYHLLLRAKN-VWLLYNT 590

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
           +        +  +   +         +        + +  +            T L+   
Sbjct: 591 DNEGIDAGEKSRFITQLEIEKQPKHTITSTIYNAVLPEKAYEPVTIPKTDKILTRLQEIA 650

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
           +           +K FSP          L             E +  +      G IIH 
Sbjct: 651 S-----------EKGFSPSSLTNYIRNPLQFYMQRILRINEAEDVEENIAANTLGTIIHN 699

Query: 789 LLQVIFTLPEHKRKNFITSYCTKNAKLWPA---KEYKNLLLS------------------ 827
            L+ +     +  +     +             K +K +                     
Sbjct: 700 ALEEL--YTPYLNQFLALHHIEAMETKIDEVILKHFKEIYKEGEITKGKNLLAFEVAKRN 757

Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK------DIIISGRIDQISISQQNIFIF 881
           +   L+        +  +   + +   ++C  +       I I+G++D+I      I I 
Sbjct: 758 VYNFLQVEK-KDIEAGQAIKVLLLEASLSCEIEVKSFPFPIKIAGKVDRIEERNGAIRII 816

Query: 882 EYKTHHHVPQEI---------EHIPYTHIAQLSIYEKILK--DSYPNKSLVCLLI 925
           +YKT       +           I    I QL  Y  + +  +   NK +   ++
Sbjct: 817 DYKTGKVDGNSLKVIDFTDLTSDIKNEKIIQLLCYALMFENHELKKNKEVSAGIV 871


>gi|254705104|ref|ZP_05166932.1| hypothetical protein Bsuib36_14511 [Brucella suis bv. 3 str. 686]
 gi|261755809|ref|ZP_05999518.1| double-strand break repair protein AddB [Brucella suis bv. 3 str.
           686]
 gi|261745562|gb|EEY33488.1| double-strand break repair protein AddB [Brucella suis bv. 3 str.
           686]
          Length = 1052

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMVRDDTGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|291562494|emb|CBL41310.1| ATP-dependent nuclease subunit B [butyrate-producing bacterium
           SS3/4]
          Length = 1182

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 81/719 (11%), Positives = 194/719 (26%), Gaps = 135/719 (18%)

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           +               ++       D   +          I   I  ++  D        
Sbjct: 294 ERTFFRYPYTRYHGGEREIMLVQAKDPADEID-------FITNRIEELVKKD-------- 338

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
              + +DI ++     D P           + +I +  ++   ++ +  I+ + +    +
Sbjct: 339 -GYRYRDIALVC---GDLPGYGREITRSFEENRIPLFLDENRDVSGNPLIRLIQSALDIL 394

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH----ETETVYEYIQKFANCGISKF--- 481
               D  S    L++ L     + + ++              ++   +    G       
Sbjct: 395 QKGFDYESMFRYLRTGLVTEETEAVDRLEIYVRAMGIRGFAKWDAAWEKTFEGGENLNLV 454

Query: 482 ------QHVIKYIHELIHI-----AQFCSPHDFFTLILGAKKGRQQFI------------ 518
                 + +++ +  L               D    +L      ++              
Sbjct: 455 EMNAFREKIMEPLRVLRERCAGRGVPVAVVTDALKELLETLGAEEKLEQFSERFADSGMD 514

Query: 519 --SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIM 575
             +R   E+ D++ E          +   S +E    L             A  + V   
Sbjct: 515 REAREYEEIYDLVIELFEKFKSLLGDECVSRREYAEILSAGFSELSVGMIPAGADRVVCG 574

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            +   +  +  V+F +     V    H K            G      + +       +L
Sbjct: 575 DLKRTRLDKIKVLFFLGVSQGVVPADHSK------------GGLFTDNEREILKKNSMEL 622

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR--------TWYDMVYD 687
               ++    E   L Y+ MT+ SDQLI+   + T+  K++            + D+   
Sbjct: 623 APTAREEGFMERFYL-YLMMTKPSDQLILSYPTVTAEGKQTRPSGIIGEMKKRFPDLFIR 681

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER---------------EETIKQ 732
               ++R              W+        PEN                    E+  K 
Sbjct: 682 ETEAEKRPDVSVTAAGRAILSWLQEPDRLMDPENEKARELYSFLSSDEAKAKEMEDLAKA 741

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG--------- 783
           +    K      +  +         + + ++          L+       G         
Sbjct: 742 VAYSYKKGGIGRAAARELYGTLLRGSVTRMEGYAGCAYSHFLNHGLGLRAGREYELDLSD 801

Query: 784 --LIIHKLLQVIFT-----------LPEHKRKNFITSYCTKNAK-----LWPAKEYKNLL 825
              + H+ L   F            + + +R+  +     + +      +  +      L
Sbjct: 802 MGNLFHQSLDTFFRNVRDHGKDFRTITDAERRALVKRAVEEVSAKYRNTIMKSSARNAYL 861

Query: 826 LSITRLLENPMMTTA--------MSCDSYSEVSVSGKINCPKKDII-ISGRIDQI--SIS 874
                 + +  +              +++ EV VS +I     + + + GRID++     
Sbjct: 862 EKKVERITDRTVRALIYQIRKGDFEPEAF-EVDVSTRIPLKDGEAVNLRGRIDRMDVFED 920

Query: 875 QQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKS-LVCLLIY 926
           +  I+  I +YK+      ++  + +    QL +Y        +  +P K  +   + Y
Sbjct: 921 EDKIYVKIMDYKSGSTSF-DLALLYHGLQLQLVVYMDAALKLQESRHPGKQAVPAGIFY 978


>gi|225853530|ref|YP_002733763.1| double-strand break repair protein AddB [Brucella melitensis ATCC
           23457]
 gi|256262986|ref|ZP_05465518.1| double-strand break repair protein AddB [Brucella melitensis bv. 2
           str. 63/9]
 gi|225641895|gb|ACO01809.1| double-strand break repair protein AddB [Brucella melitensis ATCC
           23457]
 gi|263092859|gb|EEZ17034.1| double-strand break repair protein AddB [Brucella melitensis bv. 2
           str. 63/9]
 gi|326410099|gb|ADZ67164.1| double-strand break repair protein AddB [Brucella melitensis M28]
 gi|326539816|gb|ADZ88031.1| double-strand break repair protein AddB [Brucella melitensis M5-90]
          Length = 1052

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 168/672 (25%), Gaps = 93/672 (13%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DI-------------------------------------FKICTQRHETETVYEYIQKFA 474
            I                                          Q     TV + + + A
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVL 529
                     ++ +   +   +     +     + A +   +       + +  E  + L
Sbjct: 526 RGLCKSLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 585

Query: 530 DEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL   + +E        E  + L+        + H   H  + I     A+      +
Sbjct: 586 ASFLRGLISSEAELDFEAMEWPAILDALMAGETVKPHPGGHPRLFIWGALEARLQTVDAI 645

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +  K                  +  P          +    L     +   
Sbjct: 646 VIGGLNEGSWPTKTRNDPF------------MSRPMKAMIALDPPERRTGLAAHDFQMAL 693

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            + +V +TR+            S+   +    W   +      D     +          
Sbjct: 694 GMDHVVLTRSQR----------SDNAPTVPSRWLQRLETVLGAD-----VTNEMRGRGTR 738

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
           +I +       E+ P  R+    +         K FS  + +                  
Sbjct: 739 FIHWSREIDRAEDVPFVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLR 795

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            LE L+ D     RG + H +L             +           L+   +    + +
Sbjct: 796 PLEPLIRDPAAAERGTLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDPPLEIEA 855

Query: 828 IT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQN 877
           +          + L+          + ++E++ S K       I +SGR D+I  +    
Sbjct: 856 VWWPRFTALIPQFLQWERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGT 914

Query: 878 IFIFEYKTHHHV 889
             I +YKT    
Sbjct: 915 AEIIDYKTGSTP 926


>gi|118443563|ref|YP_877318.1| ATP-dependent deoxyribonuclease subunit B [Clostridium novyi NT]
 gi|251764559|sp|A0PY66|ADDB_CLONN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|118134019|gb|ABK61063.1| ATP-dependent deoxyribonuclease subunit B [Clostridium novyi NT]
          Length = 1134

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 93/943 (9%), Positives = 245/943 (25%), Gaps = 195/943 (20%)

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF---KSTLASLTLAKYLN 134
               K   T    +   +    +      +                +     +    Y+ 
Sbjct: 103 KDELKVFATAANQEGFVNNISDIITELKRYDVTATELRATLNLIEDEFLKDKINDISYIF 162

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             ++E+  K   +D ED +      +    +              + IDE    +  Q++
Sbjct: 163 EQFQESLHK-NYIDSEDELTLLYRKIDTSKMFDGA---------EVWIDEFSSFTPQQYK 212

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           ++  L E              +    D  + I    G +        +  +++     ++
Sbjct: 213 ILEKLMEKAS--------RVNITLCMDYYRVI---DGTDVFAPT---KRTEEKLREILKE 258

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              ++L         IL   +   +  +++  L        ++                 
Sbjct: 259 -KDVKLDK-----PIILN--NDDVNRFKDSSELKYLEENYFKY---------------PY 295

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                +  + +     + +  +            IA  I+ +           +  I+ +
Sbjct: 296 KPYDKTTDDIKIIRALNPYSEV----------ENIAKEIAKI---------SMESNIRYR 336

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           DI V+ R   D      + + + ++Y+I    + +  + D+  I  + ++          
Sbjct: 337 DIAVITR---DLEGYEKIVKTIFDEYEIPYFIDKKKEIDDNPLIVLITSVIEIFNKSWSY 393

Query: 435 LSFVCMLKSPLFNFSEDD--------IFKICTQRHETETVYEYIQKFANCGISKFQ---- 482
            +    LK+ L N S+++        +      + + ++ +EY  +     I++ +    
Sbjct: 394 EAMFRYLKTGLSNVSKEEVDLLENYVLAYGIRGKKKWQSPWEYGNENILEKINEIRIKVS 453

Query: 483 --------------HVIKYIHELIHIAQFCSPHDFFTLILGAK--KGRQQFISRFGNEVI 526
                            +    + +       ++     +     +G Q     +     
Sbjct: 454 EPLIKFSSKLKGKSKADEICSAVYNFLCSIGVNETIEKWVYKFKNEGNQALAKEYSQIWN 513

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLES 585
            V+ E L+  +   +     L++ +  L       K        ++V +  V   +  E 
Sbjct: 514 MVI-ELLDQVVEVFKEEELQLKDFVKILSLGFKDYKMGLIPPSLDQVLVSDVERVRTHEI 572

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            +++++     +F                D GI     +   +   +        K+   
Sbjct: 573 KLLYIIGVNDGIFPAVSK-----------DEGILSDSDRGSLKKIGIEIAEDTKSKA--F 619

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E   L+Y  +T     L IC        K              F            +   
Sbjct: 620 EEQYLIYRTLTTTQKYLRICYSIADYEGKALRPSIIVSRFKSLFPKIAEESDNIAMDYEE 679

Query: 706 KDEWIAYEWSTHHPENTPLEREET--IKQLMDEQKIPKKLFSPIKNDINEPYILNP---- 759
           ++  +             + R E   +K       + K      +       + +     
Sbjct: 680 ENIDLISREIPTFNNLVSVLRREDNKVKVSPFWSDVYKWYSENPRWKETLDTVFSAISYT 739

Query: 760 -----------------------STIDTKGKTNL-----------ESLLSDNQTFNRGLI 785
                                  S ++   +              E  +      + G  
Sbjct: 740 NAVDDISEEKIRKMYGNKLYLTVSRLEKYAQCPFGYYIKYGLKAKERKIFALTPPDLGTF 799

Query: 786 IHKL---LQVIFTLPEHKRKNFITSYCT----------------------KNAKLWPAKE 820
           +H +      +      K       +C                          K +  + 
Sbjct: 800 MHNVIDEFSEVVDKSGFKWYEIEDKWCKDTVSEIVDRKAEESAGGIFTSSARYKYFTERL 859

Query: 821 YKNLLLSITRLLEN---PMMTTA-----MSCDSYSEVSVSGKINCPKKDIIISGRIDQI- 871
            + L+ +I  ++E+                 D      +  +++   + + + GRID++ 
Sbjct: 860 KRVLIKTILVIIEHLKRSGFQPIGHEVGFGNDEKYP-PIEIELS-SGEKVKLIGRIDRVD 917

Query: 872 ---SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
                 +    I +YK+  +    +  + Y    QL  Y   +
Sbjct: 918 KLDMEKKDYYRIIDYKSG-NKDFSLSDVYYGLQLQLLTYLDAI 959


>gi|312877108|ref|ZP_07737079.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796082|gb|EFR12440.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 578

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 121/410 (29%), Gaps = 71/410 (17%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y    K+N ++DF+D+ +   D LK  +           +  HI+IDE QD + +
Sbjct: 202 ELMQLYTSLLKENGLVDFKDMALIVLDYLKANEHKIT-------KYTHIIIDESQDLTKV 254

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E+++ L        +       +  + D  QSIY+             R     +   
Sbjct: 255 QLEILKLLYNSEKSYSS-------IMFIADTAQSIYT--------HSWLVRGRSFASIGF 299

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++R+T  I  +   +                                  
Sbjct: 300 DMTGKSYTLSKNYRTTVQIANLAYSLIEKTPE---------------------------- 331

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              + + ++   P           L    +    A  +   I N +  +           
Sbjct: 332 ---IIEDENFVKPALIDKQGPLPVLKIFQTEEQEAEFVYNEIVNNLAFE----------F 378

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           Q KDI V+ + RK                 I +  +      +       M   + +  +
Sbjct: 379 QLKDIAVICKNRKYLESFYSYVSSKGLKA-IFLNSDSGENFEEEGIRLITMHSIKGLEFK 437

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY---EYIQKFANCGISKFQHVIKYI 488
              +  +     P  +  ++++ K+     +           ++   C   K    +  +
Sbjct: 438 VVFIIGLNSNIIPYSSCEDNEVAKLQETTDKKLFYVGMTRANERLYLCCSRKPSKFLSEL 497

Query: 489 H-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
           + +L+ I   C+   F+ L +   +   +    +  E      +++E + 
Sbjct: 498 NTKLLRIDSKCNLRSFYKLRIDDYRYINKIRDIYCKEEEVRQWLINELIE 547


>gi|222823416|ref|YP_002574990.1| hypothetical protein Cla_0381 [Campylobacter lari RM2100]
 gi|222538638|gb|ACM63739.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 794

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 74/551 (13%), Positives = 151/551 (27%), Gaps = 82/551 (14%)

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE-DDLSFVCMLKSPLFN 447
           I    +       I V+  D    ++ L + D              +  F   L S   +
Sbjct: 254 IDSFLKKGLQAKDIVVITPD-EKFSEILKLYDKHNFLNLAGGVNIKNTHFYHKLNSLYKS 312

Query: 448 FSEDDIFKICTQRHETETV-YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             +D+        +E   +              KFQ + K   E I    F +   F   
Sbjct: 313 IKDDEYELKDLNLNEDTKLNLHTCNLHFFNCADKFQEIKKNFDEKIEFEFFQN---FIEE 369

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           +L      ++ +     E +  + E +     +E +    L+    +++          S
Sbjct: 370 LLVDS---EEELVIKIKEELAFIKELV---RAHELSFCQILELFFMQIDGIKL-----SS 418

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
               EV +M +  ++GL    V +VD   +    +   ++ +   +    G+     +  
Sbjct: 419 VGGGEVTVMGLLESRGLRYDGVIIVDFNDEFIPKRVSSELFLNNEIRKKAGLITHTQREN 478

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
            + +                     Y  M +A    I    +    + +      + +V 
Sbjct: 479 LQRHYY-------------------YTLMAKAKFAGISYVENEEKIKSRFLDELEFFLVE 519

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
           D  ++D    K    N    +          H      ++  T  +           +  
Sbjct: 520 DKIYSDNAYIKYFQENECKFNLDPITHIKAEH---DYFKKALTFSRFHILINYGLDYYYK 576

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-------IFTLPEH 799
               + EP IL                 ++ +    G  IHK L+        +      
Sbjct: 577 YVLGLKEPKIL----------------DNNLKANELGSFIHKALEEYYNQNKSLNYFDYE 620

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT-AMSCDSYSEVSVSGKINCP 858
           K  N + +   K          + +     ++LEN       M      E          
Sbjct: 621 KFINIVKNLKDKQIDALNFALIQAMFKEF-QMLENERFKQGYMVEKCEFEQKKEF---IS 676

Query: 859 KKDIIIS--GRIDQISISQQNI--FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
              + I+  GRID++          I +YK+     +           QL+ Y  +L+  
Sbjct: 677 DNGVKITAFGRIDRL--DNNTYERLIIDYKSGKIDEKTY---------QLAFYVFLLESK 725

Query: 915 YPNKSLVCLLI 925
               +      
Sbjct: 726 DMLANTKACFY 736


>gi|192361853|ref|YP_001982656.1| hypothetical protein CJA_2193 [Cellvibrio japonicus Ueda107]
 gi|190688018|gb|ACE85696.1| conserved hypothetical protein [Cellvibrio japonicus Ueda107]
          Length = 972

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/566 (10%), Positives = 137/566 (24%), Gaps = 89/566 (15%)

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF--- 454
             + +    +    L     +   + L     +         +L SP +  ++ ++    
Sbjct: 345 MRFTLPFNFSAGIPLGSTPLVAASLELLGLYQNHWPMEDICQLLLSPFWGHADAELVLRS 404

Query: 455 -----------------KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
                             +     +  T                +  + Y+  L    + 
Sbjct: 405 QLVNQLRELGRFHISGSDLRYWAQKLATPKAGGNTAETANRLAEETFLNYLLHLEAQRRD 464

Query: 498 C-------SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ-- 548
                      + F  +L       +   R  ++    L ++        Q     LQ  
Sbjct: 465 SFGKHPASYWSELFNRLLQHLDWPGE--RRLDSQEHQQLAQWNQLLEDFAQLDACGLQLS 522

Query: 549 --ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
             E +  L Q             + ++I+      GL     +++    + +        
Sbjct: 523 YGEALQHLRQIAAKTPFQAQTPLSPIQILGALEGSGLVFSHCWVMGLHHRQWPAAASPNP 582

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            +                       ++   +        E   +    +T+   Q     
Sbjct: 583 LL----------------------PINLQRQQQMPHASAERELVFARSLTQHYRQC---- 616

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   +        +          ++ I LT             + +  +     +
Sbjct: 617 ------AGQVVFSCASSLDDQELSPSALIRDIPLTPLEQLVPDANSLLADYWQQLLQSRQ 670

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPY--ILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
            E I+          +      +   E      N       G    E+ ++      RG 
Sbjct: 671 LEAIEDNTGPAVGKDENIRGGASIFKEQAACPFNAFARLRLGARIPEAPVTGFSAIERGN 730

Query: 785 IIHKLLQVIFTLPEHK------RKNFITSYCTKN---AKLWPAKEYKNLLLSITRLLENP 835
           ++H  L  ++     +       +  +          A +  A+   + + +    LE  
Sbjct: 731 MLHNALADLWRWLRDQASLLALDEESLQKQLHTFVNTAVMDTARLRGSSVSAFYTQLEQE 790

Query: 836 MMTTAMSCDSYSE--------VSVSGKINCPKKDIIISGRIDQI--SISQQNIFIFEYKT 885
            +   +      E        V++   I      I +  RID+I   I    + + +YKT
Sbjct: 791 RLQALLREWLQRERERPAFTVVAIEHPIEVTYAGIPLRLRIDRIDQLIETNELLLIDYKT 850

Query: 886 HHHVPQEI-EHIPYTHIAQLSIYEKI 910
            H          P     QL +Y  +
Sbjct: 851 GHPSINSWFGERPDE--PQLPLYALV 874


>gi|56551995|ref|YP_162834.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543569|gb|AAV89723.1| double-strand break repair protein AddB [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 993

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/637 (9%), Positives = 166/637 (26%), Gaps = 68/637 (10%)

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             +++         P+N +          R+           + +  +     +    + 
Sbjct: 295 RKEVIEWDPPKNYHPDNREQAIRHVMAPARYTDRWRSLPEKERAFPNLSVIETAHPEEEA 354

Query: 327 E----SWTSYFDSLPQESSASILARRIAYTISNMIGT-DTIFSNGKKRVIQAKDILVLVR 381
           +    +     +   Q ++     R +A  +S ++        +   R +      +L+ 
Sbjct: 355 QVIALALREAVEEKGQTAALVTPDRALAIRVSALLKRFGIDADDSAGRPLSLTPPGLLLL 414

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                    F         K  +V            I+ L  + R             +L
Sbjct: 415 DLVSLAADHFSAVSFLAIAKHPLVAFGEERDLWRDHIRSLDMILR-----------GPLL 463

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           ++ L   +      +  Q+ + E +  + +                  +   +       
Sbjct: 464 RNGLAGITAKIKEAVDNQKADPELLAWWEKTKTP--------FQALDQQYQSVLPLTKIV 515

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
                      G + +    G+   D++ E  +    + ++   S    +   +      
Sbjct: 516 KILRETANQIAGEKIWAEAAGHLAADLIAEIESLAADHNEDMRFSDFAHVLR-QLMDKQA 574

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            R  +  H  + I  +  A+   + ++        V+         + P +  + G+P  
Sbjct: 575 VRPMTGGHPRIFIWGLIEARLQHADLMIAASLNETVWPPIKEADPWLAPRIRSELGLPGL 634

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
             +     +  S ++   K            + +TRA                 +    +
Sbjct: 635 ELRIGIAAHDFSSVLGAKK------------ILLTRARR----------DARAPTMPSRF 672

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
           +  +     N      +        +       +   P    L+R + I     +     
Sbjct: 673 WLRLEAMAANLHHADNLPYWARQLDEPQGFRPVTRPAPNPPVLDRPKRIAVTRFDSLQSD 732

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                           +    +  G   L+ + ++     RG +IH +L+        + 
Sbjct: 733 --------------PYSYYASNILGLRKLDPVDAEPTAAWRGSLIHSILENWVKEDNSRI 778

Query: 802 KNFITSYCTKNAKLWPAKEYKNL----LLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
                        +      K L    LL     +E+ +     + +  + + V  +   
Sbjct: 779 GKLKPRALAFLESINAHIIQKTLWLPRLLQAIDWIEDEVQKN--AAEGRTILDVEREGRS 836

Query: 858 PKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEI 893
               I + G +D+I      ++ I +YKT        
Sbjct: 837 QINGIELFGFVDRIDRMGDGSLAIVDYKTGTPPSAAA 873


>gi|294851329|ref|ZP_06792002.1| double-strand break repair protein AddB [Brucella sp. NVSL 07-0026]
 gi|294819918|gb|EFG36917.1| double-strand break repair protein AddB [Brucella sp. NVSL 07-0026]
          Length = 1052

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 75/657 (11%), Positives = 165/657 (25%), Gaps = 63/657 (9%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  D ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGDPVALLALVKHPLLRLGGA 465

Query: 452 DIFKICT--------------QRHETETVYEYIQKFANCGISKFQHVI------KYIHEL 491
            I +                 +    +    + ++        +Q           I   
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRADILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 492 IHIAQFCS--PHDFFTLILGAKKGRQQFISRFGNEVIDVL--DEFLNFTLRNEQNSYSSL 547
             + +  S         +   ++     I+R   E ++ +  DE  +            L
Sbjct: 526 RGLCESLSAAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 585

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  L      +               +  A      V        ++F    ++   
Sbjct: 586 ASFLRGLISSEAELDFEAMEWP------AILDALMAGETVKPHPGGHPRLFIWGALEARL 639

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG----MTRASDQLI 663
                    G+      +K+RN+           +      R         M    D ++
Sbjct: 640 QTVDAIVIGGLNEGSWPTKTRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVV 699

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           + +   + N      R    +             +          +I +       E+ P
Sbjct: 700 LTRSQRSDNAPTVPLRWLQRL------ETVLGADVTNEMRGRGTRFIHWSREIDRAEDVP 753

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
             R+    +         K FS  + +                   LE L+ D     RG
Sbjct: 754 FVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLRPLEPLIRDPAAAERG 810

Query: 784 LIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLSIT---------RLLE 833
            + H +L             +           L+   +    + ++          + L+
Sbjct: 811 TLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEAVWWPRFTALIPQFLQ 870

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHV 889
                     + ++E++ S K       I +SGR D+I  +      I +YKT    
Sbjct: 871 WERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGTAEIIDYKTGSTP 926


>gi|302771295|ref|XP_002969066.1| hypothetical protein SELMODRAFT_440582 [Selaginella moellendorffii]
 gi|300163571|gb|EFJ30182.1| hypothetical protein SELMODRAFT_440582 [Selaginella moellendorffii]
          Length = 941

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/500 (12%), Positives = 129/500 (25%), Gaps = 107/500 (21%)

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             +      ++L+DE QDTS++Q++++                   +  VG +   I SF
Sbjct: 111 LAECHNTWAYVLVDEFQDTSVMQYKLLSL--------------HGRVTVVGSD---IISF 153

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG--- 286
           +GA        +                +    ++RST  I+     V    ++      
Sbjct: 154 NGANSLGFSTFRNDVPNY--------KEVRPHQNYRSTGCIVEAARCVIQHNDSGCSAKV 205

Query: 287 --LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
             + +D          R  +     + ++++ +     + +            Q +    
Sbjct: 206 VRMDDDFGEKTVVMECRNEEAQCAFVVDEILEKASVASDIKPVFANFAILYRQQVTGKIF 265

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
            +   +  I   +    ++     + + A     L R              L        
Sbjct: 266 QSAFRSRKIPFNMHGVAVYCKKVVKDVIALLWTSLGRSGTVFERREQSLSSLVTAV---- 321

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-------FKIC 457
                           L  L + +    DD+S    +      +    I        +  
Sbjct: 322 ----------------LNILSQVLDYLLDDISQETKISCYTRGWKTSCIVRRREPKRRPK 365

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHE-----LIHIAQ---------------F 497
           + R       E   K A         ++  + E         AQ                
Sbjct: 366 SGRDNFREQAEAEAKKALEEAKDAAALVNELEEEGKELARQEAQAVANAQKAKDKAKAAA 425

Query: 498 CSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLR------------------ 538
            S       ++      Q   +S   ++ +  + +F                        
Sbjct: 426 ASLEALGAKMMLVGGVFQDIKLSDRSDQRVSNIVKFSEKIGELKVELCPPKKTSKSSKNL 485

Query: 539 --NEQNSYSS--------LQELISELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPV 587
              E+   +S        L+  +  +        R     NHN V + T+H +KGLE   
Sbjct: 486 GLQEEVKPNSRQLGCSVLLKAFLDHIIVGETENFRTCQEENHNSVTMTTMHQSKGLEWDR 545

Query: 588 VFLVDTGSQVFSHKHIKKMH 607
           VF+V          H     
Sbjct: 546 VFIVKANELETPLLHESSSL 565


>gi|89098017|ref|ZP_01170903.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. NRRL
           B-14911]
 gi|89087180|gb|EAR66295.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. NRRL
           B-14911]
          Length = 1163

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 86/711 (12%), Positives = 195/711 (27%), Gaps = 147/711 (20%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
           + +++S         +   +A+ +            I     +   + KDI +L+R    
Sbjct: 292 ERAFSSRPAEPFAGKANVHIAQAVNRRAEIEGAAREIKRLAAEEGYRFKDIALLMRNGS- 350

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
             +   +   + +DY I    + +  + +H  I+ + +    I            +K+ L
Sbjct: 351 --VYHDIIETIFDDYGIPFFIDQKRTMMNHPLIELIRSSLEVITGYWRYEPVFRAVKTEL 408

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL-------------- 491
              S  D+  I  +  + E               K +   + I  L              
Sbjct: 409 LFPSRADLGVIREKMDKLENYVLAYGVQGEKWTKKDRWNYRRIRGLEFEQIVQTDLEKER 468

Query: 492 -------------------IHIAQFCSPHDFFTLI------------LGAKKGRQQ---- 516
                                + +  S       +            L   K  ++    
Sbjct: 469 EEELNQMRDLIAAPILRLSRRLKKADSGRRLCEAVYLYLEELDIPTKLERWKLEEEDKGN 528

Query: 517 -FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRI 574
              +R  ++  + + E L+  +    +   S+++  S L+    +++ +      ++V  
Sbjct: 529 LVKAREHDQAWNAVMELLDQFVEMLGDEKISMKQFASILDSGMESLRFSLVPPAMDQVLA 588

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
             +  ++  +    F++     V   K  ++  +  +   D    +      +  + V  
Sbjct: 589 ADLDKSRLSDIKAAFVIGLNEGVLPGKFTEEGVLADA---DREKLLQSGLKIAHGSKVR- 644

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                      + + L Y   +  S  L I         K      +     + F    +
Sbjct: 645 ---------LLDEDFLAYRAFSTPSSHLYISYPLANEEGKALMPSPYISRANELFPEAGQ 695

Query: 695 VKKIKLTNSINKDE--------------------------------WIAYEWSTHHPENT 722
           +  +     + ++E                                W  Y +   HP   
Sbjct: 696 LMWMADPFELPEEEQLLFAMNEDTSLSYLASQLQMNKRGYKISGIWWDVYNYYHAHPRLG 755

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------- 775
              R+  +  L  E +  +      K    E    + S ++                   
Sbjct: 756 DTARK-VLSSLHYENRTARLSEEAAKELYGETIQASVSRMELFHSCPFSHFAQHGLKLRD 814

Query: 776 ----DNQTFNRGLIIHKLLQVIFTLPEHKR---KNFITSYCTKNAKLWPAKEYKNLLLSI 828
                 +  + G + H  L+ I      KR    +     C K AK         L   I
Sbjct: 815 RKVFRLEAPDIGDLFHAALKFIAETVMDKRMSWSDMTRQECEKLAKEAVEMLAPKLQNEI 874

Query: 829 T----------RLLEN--PMMTTAMSCDSYS----EVSVSGKINCPKK------------ 860
                      R LEN     +  +S  S +     V +        K            
Sbjct: 875 LLSSNRHFYIKRKLENIISRASYILSEHSRASGFSPVGLELGFGPKDKLPPLSFKLRNGT 934

Query: 861 DIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           ++ + GRID++  + ++  ++  + +YK+       I  + Y    Q+  Y
Sbjct: 935 NMELVGRIDRVDKAENENGVYLRVIDYKSSAR-DLNISEVYYGLALQMLTY 984


>gi|331002449|ref|ZP_08325967.1| hypothetical protein HMPREF0491_00829 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410265|gb|EGG89699.1| hypothetical protein HMPREF0491_00829 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 1121

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 89/706 (12%), Positives = 194/706 (27%), Gaps = 130/706 (18%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I  ++  +           + +DI ++     D   ++       +  +I    
Sbjct: 320 DFVANKILKLVKDE---------GYRYRDIAIIY---GDLEGVSDSLINRFSQLEIPYYL 367

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
           +++  + ++  ++ + A    I       +    L+  L  F    +  +     E+   
Sbjct: 368 DEKMDVNNNELVEFINACIALISENFSYDAVNRYLRLGLLGFECRKVSLLDNYLLESGIR 427

Query: 467 YEYIQKFANCGISK--FQHVIKYIHELIHIAQFC----------------SPHDFFTLIL 508
                      + K   +   + I+E   +A                      D F  I 
Sbjct: 428 GYKRLHSDFTYLPKSFTESEFEEINEFKKLAMEKVSVLYTAMSKSKINIKDVCDAFRKIF 487

Query: 509 GAKKGRQQFI-----------SRFGNEVIDVLDEFLNFTLRNE---QNSYSSLQELISEL 554
             +   ++              +   E   VLDE L+   R E   +  Y S +ELI  L
Sbjct: 488 TEQNIEEKLEIVRTELEEVKDLKRAREYEGVLDEVLSLFERLELILEGEYISKKELIDLL 547

Query: 555 EQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                 IK     +  + V I  +   +      +F+                    ++ 
Sbjct: 548 HTGFEEIKLGMIPDRVDRVVIGDLKRTRLSAIKALFVCGANDGKLP-----------TVK 596

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           D  G+     + K ++   +  +    +         LY  +T+ S++L I       + 
Sbjct: 597 DGGGLINDREKRKLKSIGFN--LSDTVREDLYTGRFYLYRMLTKPSNKLFISLTGMDFDG 654

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLT---NSINKDEWIAYEWSTHHPENTPLER---- 726
           K +      +M+   F N E   K  L        K+            EN   +     
Sbjct: 655 KTNRPSILINMIKSIFPNIEIKNKEDLEIYSKFEAKEYLTENLRRLRAKENIDEKLLKYI 714

Query: 727 ---------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-- 775
                    ++     M   K      S  +    E   ++ + ++       E  +S  
Sbjct: 715 STFFDKDFIKKITSAAMYIYKDSGIGESAARELFGEELRVSVTRLENYNACPFEHFISYG 774

Query: 776 ---------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-- 824
                         + G ++H +L+  F   +  +K        +   L      +++  
Sbjct: 775 LGVEERAIHSFNAADIGSLVHDMLEKCFKYAKFSKKKIAGMSEGELYALVDEAVKESMAY 834

Query: 825 ---------------LLSITRL--LENPMMTTAMSCDSYSEVSVSGKINCPK-------- 859
                          L  I R+  L   ++   +   ++                     
Sbjct: 835 DKNSILEESKKSKVQLEKIVRMTKLTMLVLAKQLEAGNFIPFDFERIFGEKDNLEALNID 894

Query: 860 ----KDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTH--IAQLSIYEK 909
                 + + G+ID++            I +YKT      + E     +    QL IY  
Sbjct: 895 LKNNAKMYLRGKIDRVDICEENDKTLVKIIDYKTG---NMKWEMDMPYYGRALQLVIYLD 951

Query: 910 ILKDSY--PNKSL--VCLLIY-VSEPKVFIIPQNKLNKAFAEISTK 950
            + +      + +       Y +  P +      K N    ++   
Sbjct: 952 AVMEQLAKEGREILPAAFFYYHIDAPFLTRDEAKKENAFLKKLKPS 997


>gi|229028910|ref|ZP_04185011.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1271]
 gi|228732481|gb|EEL83362.1| ATP-dependent nuclease, subunit B [Bacillus cereus AH1271]
          Length = 1166

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 74/719 (10%), Positives = 196/719 (27%), Gaps = 158/719 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +  P ++       ++   ++       +A  I  ++  +           + +DI VL+
Sbjct: 294 EARPNEKFHGEASVTIHTAANLRAEVEGVAREIRRLVADE---------DYRYRDIAVLL 344

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R          + R L  DY I    +++  ++ H  ++ + +    I       +    
Sbjct: 345 RN---GESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRYDAVFRC 401

Query: 441 LKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF--------- 481
           +K+ L               D+    C         +     +                 
Sbjct: 402 VKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTDGMITD 461

Query: 482 --QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKKGRQ 515
             + + + I+ L                     +    + + F   +     L A + R 
Sbjct: 462 SEREMEEKINRLRDVVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRVRA 521

Query: 516 Q-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
           +       +    +V + +   L+  +        SL      +      ++ A+     
Sbjct: 522 EESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEKMSLSMFTDVMSTGLEALQFANIPPSL 581

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++       F++     V              L+D+    +     +   
Sbjct: 582 DQVLIANIDRSRLSNVKATFVIGVNEGVIPA----APMDEGMLSDEERDVLSAAGIELAP 637

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                      + T  E   ++Y  +TRA+++L I         K     ++   +   F
Sbjct: 638 TT---------RQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMF 688

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL------ 743
            + +        N +++ E I+Y  +     +  +++ +T K+   E  +          
Sbjct: 689 PDVKDTFITNDVNDLSRSEQISYVATPEVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFY 748

Query: 744 --------------------FSPIKNDINEPYIL-------NPSTIDTKGKTN------- 769
                                   K        L       + S ++   +         
Sbjct: 749 VTSDEWKQKSSRVLSSLFYRNRAQKLSSVVSRDLYGDTIKGSVSRMELFNRCAYAHFAQH 808

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-----------------SY 808
                E  +      + G + H  L+ I      + + +                   + 
Sbjct: 809 GLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAP 868

Query: 809 CTKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKKDII--- 863
             +   L  +  +  L   + +++   + ++        +  V +           +   
Sbjct: 869 LLQRQILLSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPM 928

Query: 864 -----------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                      + GRID++  ++      + I +YK+      ++  + Y    Q+  Y
Sbjct: 929 EFSLPNGVKMEVVGRIDRVDKAEDESGTFLRIIDYKSSSKA-LDLTEVYYGLALQMLTY 986


>gi|291460344|ref|ZP_06599734.1| exonuclease RexA [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417099|gb|EFE90818.1| exonuclease RexA [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 433

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 75/202 (37%), Gaps = 23/202 (11%)

Query: 83  NIITQEINKKSPDLKEKLKKSQD---EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY-- 137
               + + +    +++ L +  +       +  +              +  +++   Y  
Sbjct: 59  AFTREAVREFRRKIRKHLYRELNGESRGNALLQKSRQKLSEIRIQTIYSFCRWVLETYTE 118

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           E+   +       +L     +LL++      +  ++ +    I  DE+QD   +Q  ++ 
Sbjct: 119 EDIPARR------ELPGRVLELLRE---RPELMERLRRRFRKIYADELQDLDRVQQRLLL 169

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
           +L  D            +LF VGD +Q I+             ++  +++     +  S+
Sbjct: 170 TLASDRR----GRLRKNSLFMVGDPRQMIFQSGEGGLSAFWEMRKRMERQ-----RNASV 220

Query: 258 IELPLSFRSTADILTVVDKVFS 279
           I L  ++R+  +I++ V++ F 
Sbjct: 221 IVLLDNYRANGEIVSWVNENFR 242


>gi|68536027|ref|YP_250732.1| RecB family exonuclease [Corynebacterium jeikeium K411]
 gi|260578719|ref|ZP_05846627.1| RecB family exonuclease [Corynebacterium jeikeium ATCC 43734]
 gi|68263626|emb|CAI37114.1| putative RecB family exonuclease [Corynebacterium jeikeium K411]
 gi|258603216|gb|EEW16485.1| RecB family exonuclease [Corynebacterium jeikeium ATCC 43734]
          Length = 266

 Score = 80.0 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 64/225 (28%), Gaps = 36/225 (16%)

Query: 756 ILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR--KNFI 805
            L+PS  +   +  L                   +G ++H +L+ +  LP   R     +
Sbjct: 6   ALSPSRANDYKQCPLLYRFRAIDKLEEPSTVAQVKGTLVHAVLENLHQLPRGSRTYPAAV 65

Query: 806 TSYCTKNAKLWP-AKEYKNLLLSITRLLENPMMTTA------------MSCDSYSEVSVS 852
                +  K+     E   L+   + +                            E  V+
Sbjct: 66  KMIRPEWEKMLAKDPELSELVPEQSTVEFWEECRALVKGYFQMENPDGFDAHE-CEQFVN 124

Query: 853 GKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
             +     D+ + G ID++ I++   + + +YKT                 Q+  Y  + 
Sbjct: 125 LTLP---NDVPVRGFIDRVDIAETGQVRVVDYKTGKKPAPRFADSA---RFQMMFYALVW 178

Query: 912 KDSYPNKSLVCLLIYVSEPKVFIIPQ-----NKLNKAFAEISTKI 951
                       L+Y+      ++           +   E+  +I
Sbjct: 179 WRMTGELPTQLRLMYLKVSDDMVLQPTATELAAFERELGELWGRI 223


>gi|83749758|ref|ZP_00946734.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
 gi|207743471|ref|YP_002259863.1| homologous recombinational repair protein [Ralstonia solanacearum
           IPO1609]
 gi|83723578|gb|EAP70780.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
 gi|206594868|emb|CAQ61795.1| homologous recombinational repair protein [Ralstonia solanacearum
           IPO1609]
          Length = 959

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/552 (10%), Positives = 135/552 (24%), Gaps = 87/552 (15%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
               ++    R L     + V     + L+   A   LM     +    D  + + +LKS
Sbjct: 329 AQDRIVARRVRALLARVNVPVRDETGWKLSTTRAAAALMRWLDVVQGDGDTAALLDLLKS 388

Query: 444 PLFNFSEDD------------------------IFKICTQRHETETVYEYIQKFANCGIS 479
           P      D                           ++     +  T  +           
Sbjct: 389 PFCLREADAPSSVAPAWVAELERRVRRRNVSGGWGRLRRLAAQRGTDTDAADVTDATDAG 448

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR- 538
                +  + +   + +          +        +   R G +  D   + L++  R 
Sbjct: 449 PLAERLGLLADEAALWRRAGHATLEAWVTLLAGTLDRLRMRTGLQNDDAGRQLLDWLDRL 508

Query: 539 -------NEQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                   +  +  SLQE  + L                   V I+ ++ A+      V 
Sbjct: 509 RVSVHGSADAGARFSLQEWRALLSMLLESAVFSEPAPPADRRVVILPLNGARMRRFDGVV 568

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +V            + +     +  + G+P                    +     E   
Sbjct: 569 VVGCDDAQLPSAQPEWLFFSNDVRRELGLPD------------RAQRFAQQARDLAEVLL 616

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
                      ++++    +    + +    W + +              +         
Sbjct: 617 --------NQPEVVLTWQRHGGRGEPNRLSGWLERLQRRLAVAGMRIDAPVVL------- 661

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
            A + ++   +         +   +           P +  +     L            
Sbjct: 662 PALQTASRPTDMPAPAAPALVPATLSAAAYNSLRRCPYQFFVGRMLRL----------GE 711

Query: 770 LESLLSDNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPAKE-- 820
           L  +  + +  + G ++H +L                 R   + S   +      A++  
Sbjct: 712 LGEVSDELEKRDVGELLHAILHRFHRQLLDTPMADPADRLALLQSLTDERFGSLLAEDGH 771

Query: 821 YKNLLLSITRLLEN-PMMTTAMSCDSYS----EVSVSGKINCPKKDII-ISGRIDQISIS 874
                     ++ +      A   + +     EV     I  P    + + GRID+I   
Sbjct: 772 ALRFYRRWQDVMPSYLAWQAAREAEGWRFEAGEVDADTSIALPGGQALRLRGRIDRIDTH 831

Query: 875 QQ-NIFIFEYKT 885
            +  + + +YKT
Sbjct: 832 PEHGVAVLDYKT 843


>gi|315636565|ref|ZP_07891801.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315479214|gb|EFU69911.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 522

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 60/495 (12%), Positives = 135/495 (27%), Gaps = 78/495 (15%)

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +    L+  S      +     +  +   Y++          +     +    +   F S
Sbjct: 39  IKNKELYQISNAIYLYLSEDEEKNISNISYLKIDKEFIDKSIKPFWNKVT---NKELFVS 95

Query: 500 PHDFF---TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
             DF       +   +   + + +        +  FLN            L + + ++  
Sbjct: 96  ITDFIKQKEKNIELIEKYDELLYKL------NITLFLN--------ENKILLKDVYKIFL 141

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
              +       N  ++ ++ +   + +    V + D          +K   +   L    
Sbjct: 142 QKLSSITLDDINSGKITVLGLLETRAVSFDTVIVCDFNESYIPKISVKDKFLSTRLKQLA 201

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
            +P    +   +      LI                     +S  + I   ++ +N+   
Sbjct: 202 NLPTQFDRESLQKYYYKRLIS--------------------SSKNVFISYVNSETNQISR 241

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                ++    +  ND   K I   N               + +   + + +  K +   
Sbjct: 242 FANELFEKNIATDTNDSFYKHILYDN-----------HKISYFDEDIISKIDLTKFIWSA 290

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
                 L    +  +     +N  TI               + +  G IIH +L+     
Sbjct: 291 TSFKNFLECKRRFYLQYILKINEHTISL-----------KPKGYELGDIIHSILE---DY 336

Query: 797 PEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSITRLLENPMMTTAMSCDSY--SEV-SV 851
                KN I     K     P    + +     +    E                E+  +
Sbjct: 337 YSKDNKNSIEELFLKYKSSNPFLTLDLEVWKKKLLNFYE-------FDKQRLKNREIIMI 389

Query: 852 SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI-AQLSIYEKI 910
             + NC   +I I G ID++   + N  + +YKT   +  +        +  QL  Y   
Sbjct: 390 EKEFNCSFNNINIKGIIDRVDKFEDNYEVIDYKTSSTLSVDTLKTYEKSVDFQLEFYHIA 449

Query: 911 LKDSYPNKSLVCLLI 925
           L+  + N ++     
Sbjct: 450 LQQLFKNSNIKAFYY 464


>gi|126460954|ref|YP_001042068.1| putative helicase/exonuclease [Rhodobacter sphaeroides ATCC 17029]
 gi|126102618|gb|ABN75296.1| putative helicase/exonuclease [Rhodobacter sphaeroides ATCC 17029]
          Length = 997

 Score = 79.6 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/391 (9%), Positives = 100/391 (25%), Gaps = 32/391 (8%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
           ++   G      ++E         + + +   +L   +        R       ++ I  
Sbjct: 503 WLKEAGEAARAAVEELRREAPHGGELTPADYTDLFDAILARGE--VREAVQARPDLMIWG 560

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
              A+   + +V L       +         +   +    G+ +   +     +  S  +
Sbjct: 561 TLEARVQGADLVILGGLNDGTWPQLPPPDPWLNRQMRLKAGLLLPERRIGLSAHDYSQAV 620

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +            V +TRA              E ++    W + + +     +   
Sbjct: 621 AAPE------------VVLTRA----------TRDAEAETVPSRWLNRLMNLMSGLKAGG 658

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             +    +        + +    +        T            +  +           
Sbjct: 659 GPEALAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVPARPERLAVTGIRTLIRDP 718

Query: 757 LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKL 815
                        L+ L        RG I+H++L+           +    +   + A+ 
Sbjct: 719 YAVYARHILRLYPLDPLHRAPDARLRGSILHRILEAFVKDRAPGGDRPAERARLMRIAEA 778

Query: 816 WPAKEYKNLLLSITRLLENPMMTTAM----SCDSYSEVSV--SGKINCPKKDIIISGRID 869
             A+E          L              +  + + V +   G+++       ++ + D
Sbjct: 779 VLAEEVPWPAARALWLARLDRAADFFLETEAAHAGTPVVLEEEGRVDLTPLRFTLTAKPD 838

Query: 870 QISIS-QQNIFIFEYKTHHHVPQEIEHIPYT 899
           +I +     + I +YKT     ++ +     
Sbjct: 839 RIDVLPDGRLHILDYKTGTPPTKKQQEQFDK 869


>gi|322382445|ref|ZP_08056342.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153589|gb|EFX45975.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 107

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 13/98 (13%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +  ++ +ED++    ++L        I   I  +  +  IDE QDT+ +Q E+I+ + E 
Sbjct: 4   EKGIIHYEDVLAFAWEILNSS---KEILRIIRSKFPYFFIDEFQDTNPVQTEIIKLIAEK 60

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
             V          +  +GD+ QSIY F GA+ K+    
Sbjct: 61  ETV----------MGVIGDKAQSIYEFQGADVKQFDNF 88


>gi|307314255|ref|ZP_07593863.1| UvrD/REP helicase [Escherichia coli W]
 gi|306906078|gb|EFN36597.1| UvrD/REP helicase [Escherichia coli W]
 gi|315062948|gb|ADT77275.1| hypothetical protein ECW_m3937 [Escherichia coli W]
 gi|323376459|gb|ADX48727.1| UvrD/REP helicase [Escherichia coli KO11]
          Length = 541

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 21/127 (16%)

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               +L +   +      I    +HI IDE QD+SL Q ++   +          +    
Sbjct: 157 LALKILNESPAAT---RYIKARYSHIFIDEYQDSSLSQHQLFLKI----------NELGL 203

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD  QSIY F G   + +L   R          Q F+  E+ L+ R    I+   
Sbjct: 204 CSIAVGDVWQSIYEFRGGNAELLLDLVRD--------KQVFAHFEINLNHRCHPSIINYA 255

Query: 275 DKVFSIP 281
            ++    
Sbjct: 256 SRLLDPN 262



 Score = 44.9 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 101/338 (29%), Gaps = 53/338 (15%)

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL-G 425
           + R   A+ +L LVR ++             +   I+            L  +++     
Sbjct: 217 EFRGGNAELLLDLVRDKQVFAHFEINLNHRCHPSIINYASRLLDPNFVLLPSENINVYRK 276

Query: 426 RFILSQED-----DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI-- 478
           R   + +D            L    +     +   I  ++ ++  +              
Sbjct: 277 RLSGNLKDVSMTISSWISKWLNEGKWGLEHANQIAIFARKEQSLLLLCSGLTSTFRVYID 336

Query: 479 -------SKFQHVIKYIHELIHIAQFCSPHDFFTLILG--------AKKGRQQFIS-RFG 522
                  ++   + K +    + A   +  +    +              R++  S R  
Sbjct: 337 TPLDKLGTECSDLYKDLLAYRYKAI-GTAQELIDKVFDGLIINDNQQFLLRKKIKSLRAK 395

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
               +++++              S    + ++      +K+   ++ NEV++MT+H +KG
Sbjct: 396 LTDEELINKLHEIAEMLNIQFSISNDNAVLDIISDDIYLKQFMPSDKNEVQVMTLHKSKG 455

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE  +V  +D     F ++ + ++                                    
Sbjct: 456 LEFKIVLHLDMDEWSFPYRTVNEV----------------------------DRNTALYP 487

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
           +  +   L YVG+TRA    ++       N   + +++
Sbjct: 488 SLPQETNLHYVGITRAEKCCVLINAELRQNSTGAFKKS 525


>gi|229046509|ref|ZP_04192164.1| UvrD/Rep helicase [Bacillus cereus AH676]
 gi|228724871|gb|EEL76173.1| UvrD/Rep helicase [Bacillus cereus AH676]
          Length = 460

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 107/322 (33%), Gaps = 57/322 (17%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           + W      V DI K++ +  E  +  + K+ + L    +           L  F  T +
Sbjct: 98  EAWDRAIIPVEDIKKWMQV--EYKHYPLQKRRERLVGRMK-----RWIEIELKKFGETNE 150

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K   T+ +N               +   +    +  K  +   A     + L    
Sbjct: 151 KKLLKKEATKRLNAYMK--------FWPKMSALSLYSSIVKSKEILEALP---EELVKET 199

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLIQ 192
           E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  Q
Sbjct: 200 EKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQ 247

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             V++ +T              +   +GD  Q+IY + G   +     K + Q+      
Sbjct: 248 VYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY--- 291

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 EL  S+RST +I+   +++    E   GL+     +         +    ++ +
Sbjct: 292 -----YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGEDVKVIHAENQFTEIVK 346

Query: 313 QVVSQHDSQCNPQQESWTSYFD 334
            V    ++          +  +
Sbjct: 347 TVKHLQNADVKTIAVIGRTEDE 368


>gi|266620645|ref|ZP_06113580.1| ATP-dependent nuclease subunit B [Clostridium hathewayi DSM 13479]
 gi|288867732|gb|EFD00031.1| ATP-dependent nuclease subunit B [Clostridium hathewayi DSM 13479]
          Length = 1159

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 84/795 (10%), Positives = 207/795 (26%), Gaps = 137/795 (17%)

Query: 269  DILTVVDKVFSIPENAQGLSEDSTTTIRHR-----SSRIGQVGTVQLWEQVVSQHDSQCN 323
            +++  ++ +       + L          R       R  Q   V+     VS   S  +
Sbjct: 251  EMIDKLNALARQNHVKRELDIVLDEHPAVRYRRGAKRRAEQEARVERKALTVSPASSALD 310

Query: 324  PQQESWTSYFDSLPQESSASI---LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              +++   Y   +    +  I    A   A  IS ++          +   + +D+ V+ 
Sbjct: 311  FLEQNLYRYSGRVYSGKAEEIRLVQAVNPAEEISCVVRE---IGKMLREGYRYRDMAVIT 367

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
                D            +  +I    +D+  +  +  ++ + A    I       +    
Sbjct: 368  ---GDIGSFAGELIHQFDASEIPYFLDDKKSILKNPMVELVRAALETIQKDFSYETMFRY 424

Query: 441  LKSPLF----------NFSEDDIFKICTQRHETETVYEYIQ---------KFANCGISKF 481
            L++ L                 I           T +E            +         
Sbjct: 425  LRTGLVVKPEDERKLDRLENYVIAMGIRGHKRWNTPWEGWYRGGRDLNLEELNQLREEIM 484

Query: 482  QHVIKYIHELIHIAQF-CSPHDFFTLILGAKKGRQQFISRFGNEVIDV------------ 528
              +  +I       +   +  +    +L A    ++ ++R                    
Sbjct: 485  APLTAFIEAFREEGRTVRTMSEAVVRLLEALSVEEKLLARESAFQEQGEFGLSKEYGQVY 544

Query: 529  --LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLES 585
              + + ++   R       S +E    L+     IK        + + +  +   +    
Sbjct: 545  GLVVDLMDRLARLLGEEKVSRREYAEILDAGFSEIKVGLIPAAVDRIVVGDITRTRLDHI 604

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             ++F +     +   K            +  G          R                 
Sbjct: 605  KILFFIGVNDGIVPQKKENSSLFTDKEREFLGSHHIELAPTVRVESFRQ----------- 653

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
                 LY+ +T+  ++L +   +  ++ K          +   F     V        I 
Sbjct: 654  --RFYLYLALTKPEERLYLSYSAMDASGKSLRPSILLGELKKLFPQLTAVAASDEVAGIP 711

Query: 706  KDEWIAYEWSTHHPENTPLEREETI------------KQLMDEQKIPKKLFSPI------ 747
                 A    T    N  + RE++             +Q    +K+    F         
Sbjct: 712  FSIREARGRLTRGLRNYGISREDSEFLELFRHFMMNEEQRESVEKLVDAAFYAYEERGIG 771

Query: 748  ----KNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIH----- 787
                K         + + ++                  E    +    + G + H     
Sbjct: 772  KMAAKALYGTVLGGSVTRLEQYASCAYAHFLNYGLELAERQQYELAAMDIGNLFHDSIDL 831

Query: 788  ---KLLQV---IFTLPEHKRKNFITSYCTKNAK-----LWPAKEYKNLLLSITRLLENPM 836
               ++ +      T+ E +RK  +    T+  +     +  +      L      + +  
Sbjct: 832  CFKRMKEQGGDWKTIGEEERKALVHGVVTEVTEEYGNTILKSSARNAWLARKVEKITDRT 891

Query: 837  MTTA---MSCDSYSEVSVSGKINCPK------------KDIIISGRIDQ--ISISQQNIF 879
            +      +    ++ V      +               + + + GRID+  +   +++I+
Sbjct: 892  IWALAEQLKKGDFTPVGFEVSFSAADNLKAMKIPLSEAEALHLKGRIDRMDLCEDEEHIY 951

Query: 880  --IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCL--LIYVSEPK 931
              I +YK+      ++  + Y    QL +Y        +   P+K+++      Y     
Sbjct: 952  VKIIDYKSGGTSF-DLTALYYGLQLQLVVYMDAALEMEERRNPDKTVIPAGIFYYNINDP 1010

Query: 932  VFIIPQNKLNKAFAE 946
            V     +   +A   
Sbjct: 1011 VIEREGDMSPEAIDR 1025


>gi|271967185|ref|YP_003341381.1| RecB family exonuclease-like protein [Streptosporangium roseum DSM
           43021]
 gi|270510360|gb|ACZ88638.1| RecB family exonuclease-like protein [Streptosporangium roseum DSM
           43021]
          Length = 295

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 62/207 (29%), Gaps = 34/207 (16%)

Query: 750 DINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
           +      L+PS         L              +    RG ++H +L+ ++ LP   R
Sbjct: 11  EPTIIGALSPSRAGDFMTCPLLYRFRVIDRLPEPPSPAAVRGTMVHSVLERLYDLPAPAR 70

Query: 802 KNFI---------TSYCTKN----AKLWPAKEYKNLLLSITRLLENPMMTTAMSCD---- 844
                             ++          +E    L     +L      T         
Sbjct: 71  TVAAAQELLEPQWHRLLAEDPAYGGMFADDREQAQWLAQAGSML--ERYFTLEDPTCLEP 128

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
           +  E+ V   +      +++ G ID++ ++    + + +YKT        E      + Q
Sbjct: 129 AERELYVEAVL---DNGLMLRGYIDRLDVAPTGEVRVVDYKTGSAPGPAFEAKA---LFQ 182

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEP 930
           +  Y   L   + +   +  L+Y+   
Sbjct: 183 MKFYALTLWRLHGSVPRLLQLMYLGGG 209


>gi|146318588|ref|YP_001198300.1| DNA helicase [Streptococcus suis 05ZYH33]
 gi|145689394|gb|ABP89900.1| DNA helicase [Streptococcus suis 05ZYH33]
          Length = 514

 Score = 79.6 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 72/232 (31%), Gaps = 48/232 (20%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
            +IR  +    + + +DE QDT+  Q+ ++++             S   L AVGD KQ+I
Sbjct: 207 EYIRKALQMTYDFVFLDEFQDTTYAQYNLLKTCFL---------GSSCKLTAVGDNKQAI 257

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
             + GA+P       R             +  +L ++ RS   ++               
Sbjct: 258 MRWAGAKPDIFPDYIRDF---------NSNEYQLLMNHRSVPKLVKF------------Q 296

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                     H S +                        QE   + F+   +   A ++A
Sbjct: 297 KEVHQILNSNHSSIQPN-----------------NYPEFQEGEITLFEFENESLEAELIA 339

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILV-LVRKRKDTPLITFLTRFLK 397
             I   I   I    I    K++V      L+  +  +     I    + L 
Sbjct: 340 NDIESKIQGGIRPSEICILAKQKVDDYSSKLITTLNSKGIKARIENEYQELL 391


>gi|313636694|gb|EFS02364.1| ATP-dependent nuclease subunit B [Listeria seeligeri FSL S4-171]
          Length = 1056

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 82/699 (11%), Positives = 181/699 (25%), Gaps = 156/699 (22%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           Q ++       IA  I  +               + KDI +L R   D  ++        
Sbjct: 206 QANNKRAEIEGIAREIRELTSNG----------YRYKDIAILTRNLGDYDVLCETVME-- 253

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            DY I +  + +  +  H  I+ + +    I            +K+  F  S  D   + 
Sbjct: 254 -DYNIPIFIDKKRAMAKHPFIEFIRSSLDAIQFNWKYEPIFQAVKTEFFFDSAADAADMR 312

Query: 458 TQRHETETV-YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF------------- 503
            +    E    E   +       K   + + I  L       +  +              
Sbjct: 313 RKSDILENYVLENGVQNKWKWEKKGDWIYRKIRGLSINVLPQTDEELNIQNMINEMKNRI 372

Query: 504 -----------------FTLILGAKKGRQQFISRFGNEVIDVLDE---FLNFTLRNEQNS 543
                              L L      +Q  +    E      E   +L     +EQ  
Sbjct: 373 VIPLSTLETNLAKAKTGIELALALYHYLEQVQAAEHLEAWRRTAEENGYLELAREHEQAW 432

Query: 544 YSSLQELISELEQYPPT------------------IKRAHSANHNEVRIMTVHTAKGLES 585
            S    L   +E                              + ++V +  +  AK L+ 
Sbjct: 433 TSITALLDEFVEVLGEESLELSSFMEIIITGLDALEFSLLPPSLDQVILSDMENAKLLDM 492

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            V+F +     V   +   K  +     +                  +  +K   K+   
Sbjct: 493 KVIFAIGMNDGVMPLRQKDKGILSDQDRESLR-------------EQNSSLKPSAKNNIG 539

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E + L Y  ++  SD+L +         K  ++  +   +   F N      +   + ++
Sbjct: 540 EEDLLAYKIVSLPSDKLFLSYPVADEEGKMLSESNYLRKIKGQFKNLNEEIYLTDPSLLS 599

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY---------- 755
            +E   Y  S          + +  K+      +    ++   +D  E            
Sbjct: 600 DEEQSRYIRSKRAALGLLTSQLQMYKRGYPLSNVWWDAYNSYFDDKKESKNAKQVLSSLY 659

Query: 756 ---------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
                                  + S ++                  E      Q  + G
Sbjct: 660 YENKTEALQEATAKGLFGEDIHASVSRMEKFFSCEFQHFAQYGLKLEERAHFQLQAVDMG 719

Query: 784 LIIHKLLQVIFTLPE--------------HKRKNFITSYCT---KNAKLWPAKEYKNLLL 826
            I H  ++ I    +               +       +     ++  L  +K  + +  
Sbjct: 720 EIFHAAMEWITEELKRNNLDWGILTVGECKELAKLAMKFLAPKIQHEILLSSKRMEYIQY 779

Query: 827 SITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQ-- 870
            + +++     ++       ++  V +                     ++++ GRID+  
Sbjct: 780 KLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSNRELLLQGRIDRID 839

Query: 871 ISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           ++       + I +YK+  H    +  + Y    Q+  Y
Sbjct: 840 VAEEDNRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTY 877


>gi|268680530|ref|YP_003304961.1| hypothetical protein Sdel_1911 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618561|gb|ACZ12926.1| conserved hypothetical protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 780

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 65/595 (10%), Positives = 147/595 (24%), Gaps = 93/595 (15%)

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS----VVGNDRFILT 413
               I        +         R R       + T     +  I+    V+        
Sbjct: 216 SRKEILHVRVNEPLSLGGSCYGFRSRISQVAYVYSTIAQFVEEGIAPHEIVIVLPDEGFA 275

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
            HL+  D      F          + + +S  F      +  +     + E       K 
Sbjct: 276 QHLSCFDRWNNLNFA-------MGISVKQSAFF----QTLSALEKAMRQGEIEDTLRVKR 324

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                 K    +             S  DF   +L      ++       E +   + FL
Sbjct: 325 LKIDEEKL---VTCKTVWHQKLAPQSAMDFIRSLLSE----KEAQKGVFKEALFAFEHFL 377

Query: 534 NFT--LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           N    LR EQ         + +L     ++         ++ +M V   +G+    V +V
Sbjct: 378 NHAPSLRFEQ---------VIKLLLNRLSVLSEDDVRGGKITVMGVLETRGVAYKGVIVV 428

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
           D   +    +  K + +   +    G+P    +   +      L     K          
Sbjct: 429 DFNDEFVPKRSSKDLFLSSDVRAHAGLPTKRDRENLQRYFYHQLFSRATKVAIA------ 482

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           YV    A     +                               +++    +     W  
Sbjct: 483 YVKNETAMPSRFL------------------------DEMGFDTQRMADEGNFAPLLWKI 518

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
               T + +       +     +   K+   L    +                      +
Sbjct: 519 NAPRTLYTQAFIDAPYDLKAAPLSATKLKTLLSCQRQFYFRYIAKFK----------EAK 568

Query: 772 SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
              +     + G+++HK+L+          +  + +   +  K     +       +   
Sbjct: 569 MPSNTIDEQSLGIVLHKVLEEAILTQNLLEEKHLFAKIEELLKKESHNDVWGYFADVW-- 626

Query: 832 LENPMMTTAMSCDSYSEVSVSGKI---------NCPKKDIIISGRIDQISISQQNIFIFE 882
                +   +  +                    +   +  ++ G+ID+I   +  +++ +
Sbjct: 627 --LEKLRPFICNEVKR---FEDGFLVYKKEFSHSVLYQGFVLEGQIDRIDRKEDRLYVID 681

Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVFIIP 936
           YK+        +++  T   QL  Y  I         +     Y + E  +   P
Sbjct: 682 YKSGKVPTTTEKNLENTVDFQLLFYSLIAGALG---EVHGAYYYDLKEGVLIEEP 733


>gi|307266290|ref|ZP_07547830.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918668|gb|EFN48902.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 241

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 66/198 (33%), Gaps = 40/198 (20%)

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVI---DVLDEFLNFTLRNEQN-SYSSLQELISE 553
            +  +    IL      ++       +     + L+EFLN     E++    SL+  +S 
Sbjct: 1   MTVSEVINYILEETGYIEELEKEESEQAEGRIENLNEFLNAAYEFEESSEDKSLEAFLSG 60

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +                 V +MT+H+AKGLE PVVF+V     VF               
Sbjct: 61  ITLVSDIDL--AGEIGESVVLMTLHSAKGLEFPVVFMVGMEEGVFPS------------- 105

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                      +   EE  RL YVG+TR+ ++L +      +  
Sbjct: 106 ---------------------FKSFTDEYELEEERRLCYVGITRSKEKLYLTYARRRNLY 144

Query: 674 KKSNQRTWYDMVYDSFHN 691
            KS   ++   + +    
Sbjct: 145 GKSQYSSYSRFISEIPER 162


>gi|146168499|ref|XP_001016833.2| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|146145189|gb|EAR96588.2| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 881

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 14/150 (9%)

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L +      +   I +    I+ DE QD + +Q+E++                   +  V
Sbjct: 146 LYQDLQDESLSKHIFESYKLIIFDEFQDINQLQYEILMLF---------KRIGKSIIVVV 196

Query: 220 GDEKQSIYSFHGAEPK-----RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           GD+ Q+IY F G++ K      +    + N+K   N         L  +FR ++ I    
Sbjct: 197 GDDLQNIYEFRGSDYKFLKSQIIEDINKENKKFYGNENFNMLEYNLTTNFRCSSKITAFA 256

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
           + +    +        S   I   +     
Sbjct: 257 NDIIRSFQYINQNPMQSFEEIELNNKYKDL 286


>gi|170722142|ref|YP_001749830.1| UvrD/REP helicase [Pseudomonas putida W619]
 gi|169760145|gb|ACA73461.1| UvrD/REP helicase [Pseudomonas putida W619]
          Length = 834

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 81/311 (26%), Gaps = 35/311 (11%)

Query: 5   FGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
            G   +ES +              + +      +++     +               +  
Sbjct: 381 LGFDPSESAQY---------QRPGAKLAVRAEWAVKR--TLLQAFCDRPLIWLDNYAMAR 429

Query: 65  RFSL-LSSFFLTQKFTPQK---NIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
           R +  L+   +       K    +    +          ++    E         ++   
Sbjct: 430 RLAASLAGDAVAGPGFEYKVKGELAPAPLLDAFVGAANFIENLGLEVNSAVAAM-SFPSG 488

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNC--VLDFEDLIINTNDLL--KKRDVSAWIRYKIDQE 176
            S               E         V+ +         L      +    +   + + 
Sbjct: 489 DSDALFFEALALYWKALEAHLLNQSPPVMSYN----RMFALFGENNPENLKLLPDPLLRP 544

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT-----LFAVGDEKQSIYSFHG 231
           + H++IDE QD S      +R+   +         + RT     L  VGD+ QSIY + G
Sbjct: 545 LAHLMIDEFQDVSPQIVSWLRASLAEIRRRGPAIHTGRTAQYSSLLCVGDDWQSIYGWRG 604

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           + PK  +   +             + + L  ++R    ++   + +     +  G    +
Sbjct: 605 SSPKYFMEFTKTFP------SPANTRVMLVDNYRCQQLVIDAAEHLVKGAPSITGKKARA 658

Query: 292 TTTIRHRSSRI 302
                      
Sbjct: 659 AGPAAELPVSA 669


>gi|170755767|ref|YP_001780080.1| ATP-dependent nuclease subunit B [Clostridium botulinum B1 str.
           Okra]
 gi|251764549|sp|B1IEL7|ADDB_CLOBK RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|169120979|gb|ACA44815.1| ATP-dependent nuclease subunit B [Clostridium botulinum B1 str.
           Okra]
          Length = 1150

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 71/680 (10%), Positives = 182/680 (26%), Gaps = 140/680 (20%)

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + KDI V+     D      +   +   Y I    + +  + ++  I  +++    +
Sbjct: 334 KGCRFKDIAVIT---GDLEGYENIISSVFLQYNIPFFIDKKREINNNPIIVLILSALEVL 390

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGI--------- 478
                  S    LK+ L + + +++  +           Y++                  
Sbjct: 391 SKNWTYESVFRYLKTGLLDINNEEMDILENYVLANGIKGYQWTNDKPWEHKSFSNYELED 450

Query: 479 SKFQHVIKYIHELIHIA----------------------------QFCSPHDFFTLILGA 510
              + ++  I+++ + A                               +  D    ++  
Sbjct: 451 QALKELLAKINDIRYKAMEPIVTLNKNFKSIDKAKEFCEVLYEFLCNINLPDKIQNMIED 510

Query: 511 KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
            K   +   +   N++ +++ E L+  +        SL+E    L+      +       
Sbjct: 511 FKVEGEIEKASEYNQIWNIVMEVLDQIVEVIGEEKISLKEFFKILQTGFSEYEIGLIPPT 570

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            ++V + ++   +      +++V     +F                + GI     +    
Sbjct: 571 LDQVMVGSITRLRSHNINTLYIVGVNDGIFPSP-----------LKEEGILSDDDREFLG 619

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           +  +         +   E   L+Y  +T  S  L +         K          +   
Sbjct: 620 DKGLEIAKDTKSIA--FEEQFLVYSTLTTPSKYLRLSYPIADGEGKTLRPSIIISRIKKI 677

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--EQKIPKKLFSP 746
           F N      I   N   ++                  R++     +D       K     
Sbjct: 678 FANICEENDIVKLNGEEEELKNISSAKPTFNYLISNLRKDVEGVKIDNIWGDTYKWYLEN 737

Query: 747 ---------------------------IKNDINEPYILNPSTIDTKGKTNLESLLS-DNQ 778
                                      I+N   +P  ++ S ++   +      +    +
Sbjct: 738 EFWIEKLNRLIKGFDYTNQSKYIETKKIRNLYGKPLKISVSRVEKFSQCPFAYFVQYGLK 797

Query: 779 TFNR----------GLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKN-- 823
             +R          G+ +H +L+      E    +      ++  +       +E  N  
Sbjct: 798 AKDRKIFNLSYPDLGIFMHSILEKFSHELEKKGLEWGTMDLNWAEEEIDKLINEELDNKS 857

Query: 824 ------------LLLSITRLLENPMMTTAMSCDSYS----EVSVSGKINCPKK------- 860
                       +  S+ ++L+  +    +                  +           
Sbjct: 858 LDILNSSKRYEYVTKSVKKILKRSI--WLIGEHIKRGNFKPSYYELSFDIDGDYPPIAME 915

Query: 861 ---DIIIS--GRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI- 910
                +I+  GR+D++         +  I +YK+      ++  + Y    QL IY    
Sbjct: 916 LHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSG-IKEFKLSDVYYGLQLQLLIYLDAI 974

Query: 911 LKDSYPNKSLV---CLLIYV 927
           L +      +      L+Y+
Sbjct: 975 LTELAERSGINGEPGALLYL 994


>gi|49473711|ref|YP_031753.1| hypothetical protein BQ00260 [Bartonella quintana str. Toulouse]
 gi|49239214|emb|CAF25533.1| hypothetical protein BQ00260 [Bartonella quintana str. Toulouse]
          Length = 1039

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/476 (12%), Positives = 137/476 (28%), Gaps = 58/476 (12%)

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG- 509
             I        E  T+ +   + A       +  ++ +  LI   + C+ ++     +  
Sbjct: 494 KWIKTYSHDTFENSTLDQQKCEEARLLCYLLKKAVEPLASLITQRKECTINEVAIATVEV 553

Query: 510 -AKKGRQQ---FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRA 564
               GR +    ++ + +E    L  FL   + ++      L+E  +             
Sbjct: 554 FENFGRDENNSLVNLYQHEAGQALSTFLCELVSDQSGLKFQLREWPAMFSALIATRSVTP 613

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
               H  + I     ++      V +       +         +   +     +     +
Sbjct: 614 SPGGHPRLFIWGTLESRLQTVDTVVIGGLNEGSWPITARNDAFLSRQMKMMLTLEPPERR 673

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                +     +   K            V M+RA     +            +  + +  
Sbjct: 674 IGLSAHDFQWAMGMNK------------VVMSRALRVNHV-----------PSLPSRWLQ 710

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYE---WSTHHPENTPLEREETIKQLMDEQKIPK 741
             ++    +  K+I+    I        +    +       P+   +   +     +IP 
Sbjct: 711 RLETVIGKQVWKQIRTRGEILLHWAKMIDNTNMTACATRPCPIPPLKMRPRHFSVTEIPT 770

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHK 800
             + P      +   L P          L++L+ D     RG + H +L      +    
Sbjct: 771 LRYDPYAIYAKKILRLKP----------LKALIHDPDAAERGTLYHAILAAFCTQVKNPN 820

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITR---------LLENPMMTTAMSCDSYSEVSV 851
             N +        K +        + +I           L++     +      Y+EV V
Sbjct: 821 TANALDVLLNIGRKEFDKLNLPADIEAIWWNSFENFAPFLIQWE--QSLEPRKRYAEV-V 877

Query: 852 SGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           S KI      + +SGR D+I +     + IF++KT        + +      QL++
Sbjct: 878 SQKIPIGTTGVTLSGRADRIDVLPGKMVEIFDFKTSTPPSS--KQVRDLLFPQLAL 931


>gi|4455255|emb|CAB36754.1| putative protein [Arabidopsis thaliana]
 gi|7269362|emb|CAB79421.1| putative protein [Arabidopsis thaliana]
          Length = 938

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 14/97 (14%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
            +   +  +Y +  K    LD+ DLI  +  LL        +  +       I++DE QD
Sbjct: 398 EIGAKILGNYNDILKACDALDYHDLISCSVTLLSDFPE---VFKECQDTWKAIIVDEFQD 454

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
           TS +Q++++R L            S   +  VGD+ Q
Sbjct: 455 TSTMQYKLLRML-----------GSHNHITIVGDDDQ 480



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/454 (12%), Positives = 125/454 (27%), Gaps = 47/454 (10%)

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                   ++ +  +       +   I  +    +             DI +L R++   
Sbjct: 474 IVGDDDQITVKECHNEEAQCAYVIDKIIEITNDGSTPC------CSHGDIAILYRRQVSG 527

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL- 445
            +     R  K  + +               ++ ++A+ +   S+ DD S+  + K+ L 
Sbjct: 528 KVFQNAFRQRKIPFNVH-----GVAFYRKKVVQVILAMLKTTFSECDDASYRRVFKALLP 582

Query: 446 -----FNFSEDDIFKICTQRH----------ETETVYEYIQKFANCGISKFQHVIKYIHE 490
                     + I KI T R               +    ++       K    +  + +
Sbjct: 583 FEKEEKKRIIEHIEKISTSRKCSFISAASDIFNAKISGTFKRSQLTQGRKVLQTLDMVAK 642

Query: 491 L--IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
           L     +          +I       Q+ +       +   D  L   L+        L 
Sbjct: 643 LVDREQSLSAVVTCVANMIPQKYLLEQRAVVDNDGGKLLNEDNDLRSVLQY-------LM 695

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           + ++E      T      A   +     +H+         ++ +  ++ F  +     + 
Sbjct: 696 DDVAEFISTHCTTTEEEDAIKEKKGCNQLHSFIN------YISERETENFRSRRRDNENS 749

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
           +            IP     N            ++ EE  RLLYV MTRA  +L     +
Sbjct: 750 VTLTTIHQANENEIPLLHESNGN-----ASESGTSLEEERRLLYVAMTRARKKLFFLYVT 804

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
             SN +          V+++  N            I  +E    +    +        E 
Sbjct: 805 VDSNWQGDMSVNDCRKVHENLPNKTEQSVSSFGTDIKHEESKLTDNDVMNIPEDYASEES 864

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                ++     K+  + I N  +       S +
Sbjct: 865 IAAYALNGNNFLKRCRTFIPNRFDVEVRSVVSHL 898


>gi|153951609|ref|YP_001398783.1| hypothetical protein JJD26997_1829 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939055|gb|ABS43796.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 788

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 69/532 (12%), Positives = 158/532 (29%), Gaps = 66/532 (12%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              I+   R       I V+  D     + L + D   +     +    +S    L    
Sbjct: 252 MDEISHFVRKGLKPENIVVITPD-ESFCEFLRLFDKDNML----NFASGISIKESLFYQK 306

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F    +            E  +E  Q   +   +    +     E           ++F 
Sbjct: 307 FQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 366

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L          +     +  +  E   F     +N   +L+ELI  L     +     
Sbjct: 367 KLLALF-----LENEKQELIYLIRKELY-FIKDLLKNQSLTLKELI-HLFFMQISQLSLS 419

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V +M +  ++GL    V LVD   +    + + ++ +   +    G+  +  + 
Sbjct: 420 DVGGGKVTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRE 479

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             +                    R  Y  +   + ++ IC   N    K           
Sbjct: 480 NLQ--------------------RFYYESLMNNALEVSICFVENEEKSKSRFLDELDFDF 519

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +   H  ++     L       +           ++ P E   +  +    +   +  + 
Sbjct: 520 FYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSRFNLLENQKRTYYY 579

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF- 804
               ++ EP +L+                 +++  N+G  IHK+L++ +    +   +  
Sbjct: 580 RYILNLAEPRVLS----------------EESKAKNQGNFIHKMLEIYYKNYANNDFDIR 623

Query: 805 -ITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCP 858
              +   K  +       + +   L   +  +N       S     +++E+ ++  +   
Sbjct: 624 NFANLLDKEYQKYNISELDLEVFKLKFIQFAKNE--KEHFSKGFYVAHTELELNNILKLG 681

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
              I + G ID+I  S++   I +YK+                 QL+ Y+ +
Sbjct: 682 TDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSY---------QLAFYQAL 724


>gi|322373658|ref|ZP_08048194.1| ATP-dependent nuclease subunit B [Streptococcus sp. C150]
 gi|321278700|gb|EFX55769.1| ATP-dependent nuclease subunit B [Streptococcus sp. C150]
          Length = 1106

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 75/657 (11%), Positives = 192/657 (29%), Gaps = 81/657 (12%)

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
           + Q          + +  +      ++A +I  ++              + KDILVL+  
Sbjct: 285 DEQLTDQDKEALQVWEVVNQREEVAQVAKSIRQLLADGK----------RYKDILVLL-- 332

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
             D          +   + I         ++ H  ++ + +L R           + ++K
Sbjct: 333 -GDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLVK 391

Query: 443 SPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           S L+  F+++D+       +  +    +         S+ ++ +  I+ L          
Sbjct: 392 SGLYGGFTQEDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDRINALRSQLVEPLDK 451

Query: 502 DFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
              +         ++ ++     +V   +          E+     + +  ++L +   T
Sbjct: 452 LLNSRKQKGSSLLKKLVAFLETVQVPSQMAALTAKASEAEKEQNEQVWKAFTQLLEQIET 511

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
           I    S + ++   +        +   V    T   V   K+              G+  
Sbjct: 512 IFGDESLSVDDFLSILRSGMLACDYRTV--PATVDVVNVKKYDLVQPHSAPYVFALGMTQ 569

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL------------YVGMT---RASDQLIIC 665
                  +N  +    +  + +   + +R L            +V M+    AS+QL++ 
Sbjct: 570 SHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNNQRGHFVAMSLFNAASEQLVLS 629

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
           +    +           +++       E+ +            +     +     ++ L+
Sbjct: 630 QPQILNETLDDMSVYLKELLDLGISLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSQLD 689

Query: 726 REETIKQLMDEQKIPKKLFSPI--------------------------KNDINEPYILNP 759
            +   +         + L   +                               EP  L+ 
Sbjct: 690 ADLDKETQTFWSVAVRYLRKRLDKDQVLIPNVIDDVTTTKVDDQVMQLVFPGEEPLKLSA 749

Query: 760 STIDTKGK----------TNLESLLS-DNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITS 807
           S + T               LE L S      + G  +H++ +  +         + +  
Sbjct: 750 SALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSLENFDDKLEK 809

Query: 808 YCTK------NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV-SGKINCPKK 860
              +         L+   +   L   I   +      + +  +++ +V     K +    
Sbjct: 810 AIAQTNQEQPFELLYTEDQESRLSRQILEDIARST-ASVLRDNAFVKVEREEAKFDLLLA 868

Query: 861 D-IIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
           + I I+G ID++         + +YK+  +V  +I+        QL  Y + L+ +Y
Sbjct: 869 NSIKITGIIDRVDRLTDGALGVVDYKSGKNVF-DIQKFYNGLSPQLVTYLEALRQTY 924


>gi|254477674|ref|ZP_05091060.1| double-strand break repair protein AddB [Ruegeria sp. R11]
 gi|214031917|gb|EEB72752.1| double-strand break repair protein AddB [Ruegeria sp. R11]
          Length = 977

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 70/557 (12%), Positives = 149/557 (26%), Gaps = 56/557 (10%)

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            +  +    L  H    D    G  +    D    +     P  +      F +      
Sbjct: 401 PLQTDALLTLLKHPLCHDGAGRGDHLRHTRDLELRLRRYGPPFPDHDSFAAFAVGRDLMP 460

Query: 463 TETVYEYIQKFANCGISK--FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
             T +            +      +  + +L       S       +   K GR+     
Sbjct: 461 GWTDWLASCFADKTTQGERHLSEWVSQLRDLAETISKGSQPAEAGGLWDKKAGREALK-- 518

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
               VI+ L     +        ++ L               R   A +  + I     A
Sbjct: 519 ----VIENLQAEAPYGGAMTARDFADLLR-----ALLSQGEVRDRDAPYGSILIWGTLEA 569

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           +   + +V L       +         +   L    G+ +   +     +     I   +
Sbjct: 570 RVQGADLVILGGLNEGTWPEAAAPDPWLNRQLRHKAGLLLPERRIGLSAHDFQQAIAAPE 629

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
                       V +TRA            ++E  +    W + + +             
Sbjct: 630 ------------VWLTRAER----------TDEADTVPSRWLNRMTNLLSGLPDQGGPGA 667

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEPYILNP 759
            +++     +    +       PL   +           PK+L  + I   I +PY +  
Sbjct: 668 LSAMKARGQMWLGRAEALEAPKPLAPAQRPAPRPPIAARPKRLTITEIPRLIRDPYAIYA 727

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
             +       L+ L+ +     RG+++HK+L+          K     +    A      
Sbjct: 728 KHV--LRLRPLDPLVQEPDALLRGIVLHKILEDFVKGTLEDPKTLTVDHFLTCAAEQLEA 785

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVS--------VSGKINCPKKDIIISGRIDQI 871
           +    +           +         +  +        VSGK+     D  I+G  D+I
Sbjct: 786 QVPWPVARALWQARLERIAEDFIAGERNRQARARPSGFEVSGKVRVTPHDFEIAGTADRI 845

Query: 872 SISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS-----YPNKSLVCLLI 925
            + +   + +F+YKT     +  +        QL I E  + +      Y    +   L 
Sbjct: 846 DVDERGGLHLFDYKTGDPPSENQQKAFEK---QLLI-EAAMAEHGAFETYGEGRVERALF 901

Query: 926 YVSEPKVFIIPQNKLNK 942
              +  +  +P    ++
Sbjct: 902 LGLKAPLKEVPAPLQDE 918


>gi|72162215|ref|YP_289872.1| hypothetical protein Tfu_1816 [Thermobifida fusca YX]
 gi|71915947|gb|AAZ55849.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 280

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 28/216 (12%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPE 798
                     L+PS      +  L              +    RG ++H +L+ +F LP 
Sbjct: 3   SAPSPVPLRALSPSRATDFMQCPLLFRFRVIDRIPEPPSPAARRGTLVHAVLEKLFELPA 62

Query: 799 HKR-KNFITSYCT------------KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
             R  +   +                 A    A+     L     L+         S   
Sbjct: 63  ESRTPDAALALLEPQWERMREQEPDVEAMFPDAEALAAWLEEARALVR--RYFDLESPQR 120

Query: 846 YSEVSVSGKINCPKKDI-IISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
                   ++  P +   ++ G +D++ ++    + I +YKT        E        Q
Sbjct: 121 LEPQQREVRLEVPLESGPLLLGYVDRVDVAPTGQVRIVDYKTGKSPAPRYEDKA---RFQ 177

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
           +  Y  ++            L+Y+ +  V      +
Sbjct: 178 IFFYGVMVWRETGRVPDRLQLLYLGDGAVRWYDPTE 213


>gi|255018267|ref|ZP_05290393.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL F2-515]
          Length = 241

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           KKN  LDF+DLI+ T  L ++      +     ++  +I +DE QDT+  Q+ +++ L  
Sbjct: 185 KKNQALDFDDLIMVTIQLFER---VPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLAS 241


>gi|254511546|ref|ZP_05123613.1| double-strand break repair protein AddB [Rhodobacteraceae bacterium
           KLH11]
 gi|221535257|gb|EEE38245.1| double-strand break repair protein AddB [Rhodobacteraceae bacterium
           KLH11]
          Length = 975

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 68/605 (11%), Positives = 157/605 (25%), Gaps = 77/605 (12%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            ++T       + + I    +    L      + L  +      + D  + + +LK PL 
Sbjct: 356 RMLTRQVSAALDRWNILPDDSAGLPLQLSPPGRFLRHVAGLFARRLDGEALLTLLKHPLC 415

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFAN-CGISKFQHVIKYIHELIHIAQ--------- 496
           +   D    +   R     +  +   F +   ++ F    +   + +             
Sbjct: 416 HDGGDRGAHLLHTRDLELDLRRHGPPFPDSASLTAFAIRTETPEDWVRWVVGTFCDQHKP 475

Query: 497 -FCSPHDFFTLI--------LGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSS 546
                 D+   +         GA     +   +  G + + V+             +   
Sbjct: 476 GEQPLTDWVEQLCTLAEAISAGASGDTGRLWDKNAGQKALAVITALQTEAKYGGGMTAHD 535

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
             +L+           R   A H  + I     A+   + ++ L       +        
Sbjct: 536 FADLLG--ALLAGEEVRDRDAPHPHLMIWGTLEARVQGADLLILGGLNEGSWPEAAAPDP 593

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            +   + D  G+ +   +     +     I                        ++ + +
Sbjct: 594 WLNRQMRDAAGLLLPERRIGLSAHDFQQAIGA---------------------PEVFVTR 632

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
              + + +                    ++ +      +    +             LE+
Sbjct: 633 AIRSDDAETVPS-------RWLNRITNLLQGLPAQGGTDALTAMRARGQLWLGRAEMLEQ 685

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT-----NLESLLSDNQTFN 781
              I   +     P     P +  + E   L     D   +       L+ L+       
Sbjct: 686 APRITAAIRPSPRPPVAARPRRLSVTEVKRLIRDPYDIYARHVLRLKPLDPLVQAPDALL 745

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW------PAKEYKNLLLSITRLLENP 835
           RG++IH++L+                   K A              K  L  + R+ ++ 
Sbjct: 746 RGIVIHEVLEHFIRDSVLDPALLTRENFLKRASTLLNEYVAWPTARKLWLARLERITDSF 805

Query: 836 MMTTAMSCDSYSEVSVS--GKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQE 892
           +       +    V+     K+     D  I+GR D+I  S      I +YKT     + 
Sbjct: 806 LSAELQRRNDGCPVAFEVAMKLALAPLDFTIAGRADRIDRSGHGALRIIDYKTGTPPTEN 865

Query: 893 IEHIPYTHIAQLSIYEKILKDS-----YPNKSLVCLLIYVSEPKVFIIPQ----NKLNKA 943
            +        QL I E  + +      +    +   +          +P        +K 
Sbjct: 866 QQAKFDK---QLLI-EAAIAEQGGVDGFDPLPVAQAIFIGMGGTYKEVPAPLQKEPADKV 921

Query: 944 FAEIS 948
            +E+ 
Sbjct: 922 LSELK 926


>gi|153940479|ref|YP_001389797.1| ATP-dependent nuclease subunit B [Clostridium botulinum F str.
           Langeland]
 gi|251764550|sp|A7GAI7|ADDB_CLOBL RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|152936375|gb|ABS41873.1| ATP-dependent nuclease subunit B [Clostridium botulinum F str.
           Langeland]
 gi|295317884|gb|ADF98261.1| ATP-dependent nuclease subunit B [Clostridium botulinum F str.
           230613]
          Length = 1150

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 71/680 (10%), Positives = 182/680 (26%), Gaps = 140/680 (20%)

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + KDI V+     D      +   +   Y I    + +  + ++  I  +++    +
Sbjct: 334 KGCRFKDIAVIT---GDLEGYENIISSVFLQYNIPFFIDKKREINNNPIIVLILSALEVL 390

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGI--------- 478
                  S    LK+ L + + +++  +           Y++                  
Sbjct: 391 SKNWTYESVFRYLKTGLLDINNEEMDILENYVLANGIKGYQWTNDKPWEHKSFSNYELED 450

Query: 479 SKFQHVIKYIHELIHIA----------------------------QFCSPHDFFTLILGA 510
              + ++  I+++ + A                               +  D    ++  
Sbjct: 451 QALKELLAKINDIRYKAMEPIVTLNKNFKSIDKAKEFCEVLYEFLCNINLPDKIQNMIED 510

Query: 511 KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
            K   +   +   N++ +++ E L+  +        SL+E    L+      +       
Sbjct: 511 FKVEGEIEKASEYNQIWNIVMEVLDQIVEVIGEEKISLKEFFKILQTGFSEYEIGLIPPT 570

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            ++V + ++   +      +++V     +F                + GI     +    
Sbjct: 571 LDQVMVGSITRLRSHNINTLYIVGVNDGIFPSP-----------LKEEGILSDDDREFLG 619

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           +  +         +   E   L+Y  +T  S  L +         K          +   
Sbjct: 620 DKGLEIAKDTKSIA--FEEQFLVYSTLTTPSKYLRLSYPIADGEGKTLRPSIIISRIKKI 677

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--EQKIPKKLFSP 746
           F N      I   N   ++                  R++     +D       K     
Sbjct: 678 FANICEENDIVKLNGEEEELKNISSAKPTFNYLISNLRKDVEGVKIDNIWGDTYKWYLEN 737

Query: 747 ---------------------------IKNDINEPYILNPSTIDTKGKTNLESLLS-DNQ 778
                                      I+N   +P  ++ S ++   +      +    +
Sbjct: 738 EFWIEKLNRLIKGFDYTNQSKYIETKKIRNLYGKPLKISVSRVEKFSQCPFAYFVQYGLK 797

Query: 779 TFNR----------GLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKN-- 823
             +R          G+ +H +L+      E    +      ++  +       +E  N  
Sbjct: 798 AKDRKIFNLSYPDLGIFMHSILEKFSHELEKKGLEWDTMDLNWAEEEIDKLINEELDNKS 857

Query: 824 ------------LLLSITRLLENPMMTTAMSCDSYS----EVSVSGKINCPKK------- 860
                       +  S+ ++L+  +    +                  +           
Sbjct: 858 LDILNSSKRYEYVTKSVKKILKRSI--WLIGEHIKRGNFKPSYYELSFDIDGDYPPIAME 915

Query: 861 ---DIIIS--GRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI- 910
                +I+  GR+D++         +  I +YK+      ++  + Y    QL IY    
Sbjct: 916 LHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSG-IKEFKLSDVYYGLQLQLLIYLDAI 974

Query: 911 LKDSYPNKSLV---CLLIYV 927
           L +      +      L+Y+
Sbjct: 975 LTELAERSGINGEPGALLYL 994


>gi|91976763|ref|YP_569422.1| superfamily I DNA/RNA helicase-like protein [Rhodopseudomonas
           palustris BisB5]
 gi|91683219|gb|ABE39521.1| Superfamily I DNA and RNA helicases-like [Rhodopseudomonas
           palustris BisB5]
          Length = 542

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 18/133 (13%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           + +  +DFED+ +   + L     +  +   +      I++DE QD +    +++  L  
Sbjct: 139 RSHGQIDFEDVRVCVRERLSDVAFAKRVGAALAARFREIIVDEAQDCNPADLQIVDWL-- 196

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    +S   +  + D  QSIY F G     + R                  + + 
Sbjct: 197 --------RASGIRVKVICDPHQSIYEFRGGVTDELQRFAATFDA--------TDRLPMS 240

Query: 262 LSFRSTADILTVV 274
            +FRS+  I   +
Sbjct: 241 GNFRSSPAICAAI 253


>gi|295698803|ref|YP_003603582.1| tn2-1p [Thermococcus nautilus]
 gi|295126567|gb|ADF80196.1| tn2-1p [Thermococcus nautilus]
          Length = 569

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 88/254 (34%), Gaps = 34/254 (13%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
             P   +        +         L   +++ +       E  F + ++    ++  P 
Sbjct: 90  RAPGGDLRYFRTIHGICQVLLRDAGLDAWKSVSRKMGGLSPERWFQIFAN-RRRKEVDPS 148

Query: 82  KNIITQEINKKSP-DLKEKLKKSQDEF--IKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
                  +   +P +    L + + +    +       +   +         +     + 
Sbjct: 149 FRFDPDSMGAANPFEKANYLWQVKSQVINREYPKVGREHITERVLEELPPSLQDHYLAWL 208

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           + K++  + D++D++I+  D LK   +S             +++DE QD S +Q+E+ + 
Sbjct: 209 DFKQEKGIKDYDDMLIDAYDALKAGVISLPT--------RVLIVDEFQDLSPLQFEIFKM 260

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L  D             +   GD+ Q+I+++ GA+P+ ++      Q            I
Sbjct: 261 LARD----------KELVVIAGDDWQTIFTWMGADPRFLVNYPADLQ------------I 298

Query: 259 ELPLSFRSTADILT 272
            L  ++R    IL 
Sbjct: 299 ILRKTWRLPEKILR 312


>gi|325277621|ref|ZP_08143202.1| UvrD/REP helicase [Pseudomonas sp. TJI-51]
 gi|324097241|gb|EGB95506.1| UvrD/REP helicase [Pseudomonas sp. TJI-51]
          Length = 823

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 11/147 (7%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF-----FVGKNTHSSPRT 215
              +    +   + + + H++IDE QD S      +R+   +       +    H+   +
Sbjct: 518 NNPENLRLLPDPLLRPLAHLMIDEFQDVSPQIVSWLRASLREIRRRGPAMHTGRHAQHSS 577

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  VGD+ QSIY + G+ PK  +   ++            + + L  ++R    ++   +
Sbjct: 578 LLCVGDDWQSIYGWRGSSPKYFMEFTKVFAA------PANTRVMLVDNYRCRQQVIDAAE 631

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRI 302
            +        G    ++          
Sbjct: 632 HLVKGTPAIAGKKARASGPAAQLPGSP 658


>gi|205372123|ref|ZP_03224939.1| UvrD/REP helicase [Bacillus coahuilensis m4-4]
          Length = 245

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             +   Y        VLDF+D++     +  +      I     +   +I +DE QD + 
Sbjct: 173 ARVFEAYNNMMLSQRVLDFDDILFYAYRIFSE---RPQIASSYTRLYKYIFVDEAQDLNA 229

Query: 191 IQWEVIRSLTEDFFV 205
            Q++VIR+L   F  
Sbjct: 230 AQYKVIRALCNGFPT 244


>gi|310820607|ref|YP_003952965.1| hypothetical protein STAUR_3346 [Stigmatella aurantiaca DW4/3-1]
 gi|309393679|gb|ADO71138.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1071

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/566 (8%), Positives = 127/566 (22%), Gaps = 96/566 (16%)

Query: 479  SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTL 537
                   + + +L  +             LG    + +       + +   + E      
Sbjct: 452  ELLGAWWQAVRQLGLMDSEGELEPLRDGALGLLGLKARARDDAARQALGLRVAELERGLR 511

Query: 538  RNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            R E     S +     L +            +   V ++ +    G     +FL      
Sbjct: 512  RVEGGPRLSRRTFGRWLVDAMRDVSLPPGGPSSGAVEVLDIRELAGRTFGHLFLAGMTEG 571

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
             F           P L D   + +     +    +     +        E   L    + 
Sbjct: 572  RFPGHEAPN----PLLGDADRVELNKHLERDVFRLTGGEFEERAPWRLTEDRLLFASVLV 627

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
             A +Q+ +         ++     + + V      +   + +     ++           
Sbjct: 628  AAEEQVSLSFAVAGVGGQEQVPSAFLEEVRRLTGRNWEARALMAVPPLDDVLTEPELRQR 687

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI------------------------- 751
               E     R    +  M E  + +                                   
Sbjct: 688  VALETMASARLRVTEPDMAEPLLRRHFAGEAWYAEARELARVELERLHFFSDPAHRVGPH 747

Query: 752  -------------------NEPYILNPSTIDTKGKTNL-------------ESLLSDNQT 779
                               +E   L+ S +   G                 E    +   
Sbjct: 748  TGHVVGPGLPEALRETFRFDETRPLSASALARFGNCGFQGFLTYGLKVAEPEQPGEEFDA 807

Query: 780  FNRGLIIHKLLQV--------------IFTLPEHKRKNF-------ITSYCTKNAKLWPA 818
              RG   H++++               +  +PE                           
Sbjct: 808  RGRGTFWHRVVEEVFRRLREKGLLGKGLEEIPEEVLTAAVAEAVRSFEQRHHVGHPELWK 867

Query: 819  KEYKNLLLSITRLLENPM------------MTTAMSCDSYSEVSVSGKINCPKKDIIISG 866
               +       R+L +                     ++  +      +   ++ I   G
Sbjct: 868  LAKERARAMARRILADERRGLPFERYMPEDFELKFGPEALRDTWKQVSLAAGQEAIHFEG 927

Query: 867  RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            +ID++     ++ + +YK+     +E++    +   QL +Y    + S   ++       
Sbjct: 928  KIDRLDQRAGDVGVIDYKSGRLDKRELKEKLLSSDFQLPLYLYAARASGHREARNAAWFS 987

Query: 927  VSEPKVFIIPQNKLNKAFAEISTKIP 952
            +       + +    +   ++    P
Sbjct: 988  LRTGTTLHLSELLSPEEIDDMLATEP 1013


>gi|288553537|ref|YP_003425472.1| hypothetical protein BpOF4_02565 [Bacillus pseudofirmus OF4]
 gi|288544697|gb|ADC48580.1| hypothetical protein BpOF4_02565 [Bacillus pseudofirmus OF4]
          Length = 958

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 80/675 (11%), Positives = 190/675 (28%), Gaps = 84/675 (12%)

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD--T 361
               V ++  +  +       Q+E     F    +   ++  A  +    ++    +   
Sbjct: 194 AGIPVTIYLPIDQEFAIIQQTQKELTALGFQMHAETDLSAEPAEDVDVIAASTKNEEIRA 253

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
           +    +   +  ++  ++V   KD      L R+    YKI +    +  L   ++ + +
Sbjct: 254 VLEEIRMSPLLYEETGIIVVDEKDGA---SLLRYYAEQYKIPLNVPIKKSLDCSISFQFI 310

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET-ETVYEYIQKFANCGISK 480
             L  +     D          PL     D IF +   +        E      +    +
Sbjct: 311 HKLLTW-----DYSKTNRFELLPLI----DQIFTLHGLKGIDYVKAKEAFLATGDIIHQE 361

Query: 481 FQHVIKYIHE--LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI------------ 526
            + + + I E      + F       +  +   +   ++  R G E              
Sbjct: 362 SRELYQRIKEFNWRKSSSFYHYLKQLSQAVIQLELDGKWRQRQGQETRTSELKDIVFELK 421

Query: 527 --DVLDEFL-NFTLRNEQNSYSSLQE----LISE-LEQYPPTIKRAHSANHNEVRIMTVH 578
             + L E + ++  + E    + L           LE    T       +   +++ T  
Sbjct: 422 TIERLTELVSDYAEKLEAKHLTDLHMTLDVFADWVLELAKRTELFTARGSKRGIQVHTWR 481

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND----DPGIPIWIPQSKSRNNIVSD 634
                E   ++++      F   H    ++          +  +P        +      
Sbjct: 482 DIGLFEGKKMYVIGMNEGAFPAVHQLGGYVHEKDLYNLPVEGALPTQEHFRHKQQAYFGQ 541

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQL---IICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
           L+   K             G+      L    I +       + + +      +  S  +
Sbjct: 542 LLLAAKSIV-----CTYTKGLDPNHPHLPSPFIEQWLQKDGRECTFEARMKHSISFSKED 596

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                   +   +   E  A             E EE +++   +  + K   S  + + 
Sbjct: 597 QIEKTAYHMGLGMKVLEPAAELVQLSQRHQYLSEGEEKLEEAHQD-SLMKNTVSITELES 655

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---------FTLP-EHKR 801
                             ++S+       + G +IH L++ I                + 
Sbjct: 656 YARCPFKHGLERVLQVGEVKSIQERISPIDIGQMIHTLIESIYKELDLIGVPFGECTEEI 715

Query: 802 KNFITSYCTKNAKLWPAK---------------EYKNLLLSITRLLENPMMTTAMSCDSY 846
           KN +     +  +    +               E +     I R  +             
Sbjct: 716 KNEVPVLLKEKFEELWEQIESTAFEISRLDLLLEKEKWWRKINRWWQAER-KHFWDNPHL 774

Query: 847 SEVSV-----SGKINCPKKDII---ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
           SE+ +     S ++     +     ++G++D++ + Q+   I++YKT     +  E +  
Sbjct: 775 SEMKIHSLETSLRLELELDEGTTLHLTGKVDRVDLDQEGFTIYDYKTGFAHVKLEEEVRS 834

Query: 899 THIAQLSIYEKILKD 913
               QL +Y + LK+
Sbjct: 835 GLKLQLPLYARALKE 849


>gi|260589314|ref|ZP_05855227.1| ATP-dependent nuclease subunit B [Blautia hansenii DSM 20583]
 gi|260540395|gb|EEX20964.1| ATP-dependent nuclease subunit B [Blautia hansenii DSM 20583]
          Length = 1144

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 76/734 (10%), Positives = 195/734 (26%), Gaps = 133/734 (18%)

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP--QESSASILARRIAYTISNMIG 358
           R    G  +    +     +    +++ +    D++   +  + +      A  I  ++ 
Sbjct: 277 RGEYQGRFKDNPPMAFLEKNVFRYRRKKYPKQQDAVQIYEAQNPASEMEMTAGEIRRLVR 336

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
           T         +  + +D  V+     D  +           Y+I    +++  +  +  +
Sbjct: 337 T---------KGYRYRDFAVIT---GDMQVYAPAAARAFARYEIPCFIDEKHSVFLNPFV 384

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPL--------------------FNFSEDDIFKICT 458
           + L A    I+      S   ML+  L                      FS      + +
Sbjct: 385 EYLRAAVDMIVENFSYESIFRMLRCGLNDISTEEADRLENYVIAMGIRGFSRWQQEWVRS 444

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYI-----------HELIHIAQFCSPHDFFTLI 507
            R E       I K     + K++   K +             L          +     
Sbjct: 445 YRGENPEECVQIDKIRASLVEKWEPFYKKMKTPDASVRTYTEALYQYITANKIQEKLKEF 504

Query: 508 LGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
               +      + +  +++ +++   L+  +    +    ++E    LE      K    
Sbjct: 505 TRNFEAEGNLSLVKEYSQIYEIVMNLLDKLVEILGDKKVRIREFKEILEAGLSEAKVGII 564

Query: 567 AN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               ++V +  +   +  +  +VF V         +      +     ++    +     
Sbjct: 565 PPTSDQVLVGDMERTRLKDIKIVFFVGVNEGKIPKEQQAGKLLSDLNREELKGSLKERGL 624

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                   +L               LY+ +T+ S+++ +     +S+ +  +       +
Sbjct: 625 SLAPTAKENLYTQKFY---------LYLNLTKPSERIYLSYSRLSSSGEAMSPSFLVAQI 675

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET---------------- 729
              F +  R   + L                   + T    EE                 
Sbjct: 676 QKLFPDAVREWDVPLFAESKYGALDRLSEEMRKQDRTSPVFEELMSWFTSQKEYGELVNR 735

Query: 730 -IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDN 777
            I                 +         + S ++   K              E +  + 
Sbjct: 736 LIDAAYYVNPQESISKGVAEALYGTELSNSASRLEQFAKCACSHFLSYGLMLRERVRYEF 795

Query: 778 QTFNRGLIIH---KLLQV--------IFTLPEHKRKNFITS-------------YCTKNA 813
              + G ++H    L              L + +R                     +   
Sbjct: 796 SMADMGTLLHNSLDLFARKVREQGKSWVDLEDEERDTLAEDCVTEVVEKSGETILLSSAR 855

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV-------SGKINCPKKDII-IS 865
             +     K ++      L+  +        + +E +        S   +      + + 
Sbjct: 856 NAYTINRVKRMVKRSVWALQKQLKQGEFYP-ALTEWAFGEKDNIDSLNFDLESGQKLHLK 914

Query: 866 GRIDQISI---SQQNIFI--FEYKTHHHVPQEIEHIPYTH--IAQLSIYEKIL----KDS 914
           GRID+I +    + ++++   +YK+      +++ I   +    QL++Y        K  
Sbjct: 915 GRIDRIDVCQDKENHLYVKVIDYKSGTT---QLDLIKLYYGLQIQLALYLNAALELEKKR 971

Query: 915 YPNKSLVCL--LIY 926
           +P+K +       Y
Sbjct: 972 FPDKFVQPAGVFYY 985


>gi|320532645|ref|ZP_08033442.1| hypothetical protein HMPREF9057_01317 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135139|gb|EFW27290.1| hypothetical protein HMPREF9057_01317 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 261

 Score = 79.2 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 59/192 (30%), Gaps = 18/192 (9%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI------TSYCTKNAKLWPAKEYKNLLL 826
               +   ++G ++H +L+ ++ LP   R+           + +   K     +      
Sbjct: 16  PEPGSLATHKGTVVHGVLERLYDLPASDRRPEAALDLLPEQWASHREKNPEVMDLFEDAS 75

Query: 827 SITRLLENPMMT-----TAMSCDSYSEVSVSGKINCP-KKDIIISGRIDQISISQQNI-F 879
            +   LE          T  +            +       +++ G +D++ ++      
Sbjct: 76  RVETWLEEARGLIRTYFTLENPQRLEPADRELFVQTETGDGLLLRGFVDRLDVAPDGAMR 135

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
           + +YKT               + Q+  Y  +L            L+Y+ + +V  +  + 
Sbjct: 136 VVDYKTGRSPGTRFMEDA---LFQMRFYALVLWRLRGRAPARLQLVYLKDGRV--LTHDP 190

Query: 940 LNKAFAEISTKI 951
                    T++
Sbjct: 191 RLPELERTETRL 202


>gi|326329757|ref|ZP_08196078.1| RecB family exonuclease [Nocardioidaceae bacterium Broad-1]
 gi|325952522|gb|EGD44541.1| RecB family exonuclease [Nocardioidaceae bacterium Broad-1]
          Length = 293

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 70/215 (32%), Gaps = 43/215 (20%)

Query: 757 LNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR-KNFITS 807
           L+PS         L              ++   RG ++HK+L+ +F LP  +R      S
Sbjct: 22  LSPSRASDFTSCPLLYRFRTIDQLPEPPSEAAARGTVVHKVLEDLFDLPAPERTPRQARS 81

Query: 808 YCTKNAKL--------------WPAKEYKNLLLSITRLLENPMMTTAMSCDSY----SEV 849
              +  +                  +E    L S  ++L                   E 
Sbjct: 82  MVEQAWEDVRSLDPALATLFTTAADEEEAAWLESCRQVLR--RYFDLEDPRRLEPAEREH 139

Query: 850 SVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
            V   ++     +++ G ID++ I +   I + +YKT     +  E      + QL  Y 
Sbjct: 140 YVEALLDS---KLLLRGFIDRVDIAADGRIRVVDYKTSRIPSETYEAKA---LFQLRFYA 193

Query: 909 KILKDSYPNKSLVCL---LIYVSEPKVFI-IPQNK 939
            +    +  + +V     LIY+    +   +P   
Sbjct: 194 LV---IWRTRGVVPAMLQLIYLGSGDILRYVPDEA 225


>gi|312794624|ref|YP_004027547.1| lexa repressor [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181764|gb|ADQ41934.1| LexA repressor [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 819

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 121/410 (29%), Gaps = 71/410 (17%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y    K+N ++DF+D+ +   D LK  +           +  HI+IDE QD + +
Sbjct: 202 ELMQLYTSLLKENGLVDFKDMALIVLDYLKANEHKIT-------KYTHIIIDESQDLTKV 254

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E+++ L        +       +  + D  QSIY+             R     +   
Sbjct: 255 QLEILKLLYNSEKSYSS-------IMFIADTAQSIYT--------HSWLIRGRSFASIGF 299

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++R+T  I  +   +                                  
Sbjct: 300 DMTGKSYTLSKNYRTTVQIANLAYSLIEKTPE---------------------------- 331

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              + + ++   P           L    +    A  +   I N +  +           
Sbjct: 332 ---IIEDENFVKPALIDKQGPLPVLKIFQTEEQEAEFVYNEIVNNLAFE----------F 378

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           Q KDI V+ + RK                 I +  +      +       M   + +  +
Sbjct: 379 QLKDITVICKNRKYLESFYSYVSSKGLKA-IFLNSDSGENFEEEGIRLITMHSIKGLEFK 437

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY---EYIQKFANCGISKFQHVIKYI 488
              +  +     P  +  ++++ K+     +           ++   C   K    +  +
Sbjct: 438 VVFIIGLNSNIIPYSSCEDNEVAKLQETTDKKLFYVGMTRANERLYLCCSRKPSKFLSEL 497

Query: 489 H-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
           + +L+ I   C+   F+ L +   +   +    +  E      +++E + 
Sbjct: 498 NTKLLRIDSKCNLRSFYKLRIDDYRYINKIRDIYCKEEEVRQWLINELIE 547


>gi|254819651|ref|ZP_05224652.1| RecB family protein exonuclease [Mycobacterium intracellulare ATCC
           13950]
          Length = 298

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 70/228 (30%), Gaps = 26/228 (11%)

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
             +       P +  S      +         +  + +       + +    RG ++H  
Sbjct: 4   QPEAPQSVTGPARQVSRPALSPSRAADFKQCPLLYRFRAIDRLPEAPSPAQLRGSLVHAA 63

Query: 790 LQVIFTLPEHKR-KNFITSYCT-----------KNAKLWPAKEYKNLLLSITR------L 831
           LQ ++ LP  +R  +   S              +        +   LL            
Sbjct: 64  LQQLYELPAAQRGPDTALSLVQPAWEQVMAATPEMTAGLDPAQRSQLLAEAQALLAGYYR 123

Query: 832 LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVP 890
           LE+P            E  V  ++       ++ G ID+I ++    + + +YKT    P
Sbjct: 124 LEDPT---RFDPQC-CEERVEVELA---DGTLLRGFIDRIDVAATGELRVVDYKTGKAPP 176

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
           +      +  + Q+  Y   L  S         LIY+++ +V     +
Sbjct: 177 EARALAEFKAMFQMKFYAVALLRSRGVPPTRLRLIYLADGQVLDYSPD 224


>gi|317009003|gb|ADU79583.1| hypothetical protein HPIN_01645 [Helicobacter pylori India7]
          Length = 778

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/463 (11%), Positives = 122/463 (26%), Gaps = 74/463 (15%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFT-LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            ++K + +L       SP        L      QQ                  + L  + 
Sbjct: 314 ELVKILEDLETGGFDLSPSPLLDLENLTLPLLEQQSSKEKAPLKEAHSQIMHQYHLLKDT 373

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               SL++L+    Q      R   ++  ++R+M     +G++   + +VD         
Sbjct: 374 LKNYSLKDLLHLYLQEFEASFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSL 433

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
               + +  +L     +P  + +   + +    L                     + S +
Sbjct: 434 KDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLF--------------------KNSKE 473

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +++    + +++          ++      +       L       ++   E  T  P++
Sbjct: 474 MVLSYIESETSKVSK------MLLELDLPIEPIKDAYTLFAPSPLKDYQEEEIKTTIPKD 527

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
                            +   L    +   +       S  D                  
Sbjct: 528 FSF----------SASSLNAFLTCKRRFYYHYIKRFKESPKDESNSI------------- 564

Query: 782 RGLIIHKLL--QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMM 837
            G ++H+LL          +  +  +         + P +    L+    I         
Sbjct: 565 VGSLLHELLKEAYEKDKNPYALEERLIQLLKTKENITPKERLDTLIALKKIQAFYVKE-- 622

Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT----------- 885
                      + +        + ++  GRID+I  +    + + +YK            
Sbjct: 623 KERFKAKIKI-LDLEKSFETTIQGVMFKGRIDRIDKTADNEMILLDYKFKSELKLDNMSK 681

Query: 886 ---HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
                  P EI  I   +  Q+++Y   LK+      +     
Sbjct: 682 TQRGDLSPIEIAQISTDY--QMAVYAFALKNLGYKGPIKAFFY 722


>gi|163742589|ref|ZP_02149975.1| hypothetical protein RG210_06869 [Phaeobacter gallaeciensis 2.10]
 gi|161384174|gb|EDQ08557.1| hypothetical protein RG210_06869 [Phaeobacter gallaeciensis 2.10]
          Length = 977

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 116/958 (12%), Positives = 264/958 (27%), Gaps = 100/958 (10%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
           F  + ++  V+ S  T +P  L K + +   S+               L  + +   ++ 
Sbjct: 20  FPRALVDGLVARSQNT-SPEELAKVELIVNTSRMARRVRDLFDQGPALLLPRISLLSDLD 78

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN- 144
            +   +  P     L++  +    I           +  +   L+  L A ++E + +  
Sbjct: 79  MRATLRGLPPALPPLRRRLELSQLIAKLLEAQPDLAARSSLYDLSDSLAALFDEMQGEGV 138

Query: 145 -----CVLDFEDL----------IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                  LD  D+          I   ++  +  + +   + +  +++   LI+E QD S
Sbjct: 139 SPEIIRSLDVSDMSGHWARAQQFIAIADEFAETHEHAMDAQAR-QRQVVLDLIEEWQD-S 196

Query: 190 LIQWEVI-------RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
             Q  VI       R  T               +    D++Q  + +   +   +     
Sbjct: 197 PPQHPVILAGSTGSRGTTLMLMEAIARLPQGAVILPGFDDQQPGHVWEHLDDPLMSE--- 253

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                         + +L ++      +   VD + +     + +S          +   
Sbjct: 254 ----DHPQYRFFKIMRDLDMT---PDQVRPWVDAIPASMARNRLVSLALRPAPVTDAWMR 306

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                  + +        +    +    +    L + +     A  I      M+     
Sbjct: 307 EGPELRDIDQATADVSLVEAPNPRAEALAIALRLRKAAEDGQTAALITP--DRMLTRQVA 364

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
            +  +   I   D      +             L       +  +    L  H    D +
Sbjct: 365 AALDRW-DILPDDSAGQPLQLSPPGRFLRHIAELFCK---PLACDTLLTLLKHPLCHDGV 420

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--EYIQKFANCGISK 480
             G  +    +    +     P  +      F+I  +     T +  +   +    G   
Sbjct: 421 GRGDHLRHTRELELRLRRYGPPFPDPDSFAAFEIGRELMPGWTAWLTQCFAEKPISGTQP 480

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
               I  +  L       S +     +   K GR+           ++++          
Sbjct: 481 LSQWIDALRNLAEAISRGSQNAADGGLWDKKAGRKAL---------EIINNLQAEAGYGG 531

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           Q +     +L+           R   A +  + I     A+   + +V L       +  
Sbjct: 532 QMTARDFADLLR--ALLSQGEVRDRDAPYGSILIWGTLEARVQGADLVILGGLNEGSWPE 589

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                  +   L    G+ +   +     +     +   +            V +TR+  
Sbjct: 590 AATPDPWLNRQLRHQAGLLLPERRIGLSAHDFQQAVAAPE------------VWLTRSER 637

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                     S+E  +    W + + +                +         W+     
Sbjct: 638 ----------SDEADTVPSRWLNRITNLLSGLPGQGGPAALADMRARGQEWLGWAEVLEA 687

Query: 721 NTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
            T L   +           P++L  + I   I +PY +    +       L+ L+ +   
Sbjct: 688 PTSLPPAKRPAPRPPVAARPRRLTITEIPRLIRDPYAIYAKHV--LKLRPLDPLVQEPDA 745

Query: 780 FNRGLIIHKLLQVIFTLPEHKRK--------NFITSYCTKNAKLWPAK--EYKNLLLSIT 829
             RG+++HK+L+          K           T++         A+      L     
Sbjct: 746 LLRGIVLHKILEDFIKASVTDPKRLTVPDFLTTATAHLEAKVPWPVARSLWLARLERIAE 805

Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHH 888
             +       A++  S  EV  SG +     D  I+G  D+I + +   + +F+YKT   
Sbjct: 806 DFITGEQQRQAIAQPSGFEV--SGAVRVAPLDFEIAGTADRIDVDERGGLHLFDYKTGDP 863

Query: 889 VPQEIEHIPYTHIAQLSIYEKILKD----SYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
             +  +        QL I   + +      Y    +   L    +  +  +    L++
Sbjct: 864 PTESQQKTFEK---QLLIEAAMAERGAFERYGEGRVERALFLGLKSPLKEVAAPLLDE 918


>gi|163844119|ref|YP_001628523.1| double-strand break repair protein AddB [Brucella suis ATCC 23445]
 gi|163674842|gb|ABY38953.1| double-strand break repair protein AddB [Brucella suis ATCC 23445]
          Length = 1052

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 74/657 (11%), Positives = 165/657 (25%), Gaps = 63/657 (9%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F  P+        +   +R     +  +   +   + +     +     ++W      
Sbjct: 290 SIFGHPQYGLHKLLQAIGALRQDVDVLEDMPRAKRLRERIVSEALRPAETTDAWGLLNRD 349

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              + SA   A   A  I +++             +  +D L   RK             
Sbjct: 350 PDMQPSALREA---AARI-DLVEASNEREEALAVALALRDALADERKTAALVTADRNLAR 405

Query: 396 ----LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED 451
                   + I    +    L D      L  L   + +  + ++ + ++K PL      
Sbjct: 406 RVVGELARFGIDADDSGGRHLRDVETATLLRLLVETVFNPGNPVALLALVKHPLLRLGGA 465

Query: 452 DIFKICT--------------QRHETETVYEYIQKFANCGISKFQHVI------KYIHEL 491
            I +                 +    +    + ++        +Q           I   
Sbjct: 466 RIDRRLAGETLELVAFRGGTGRAGILDLPAFFERRLKESADQPWQPAWHTTVTQDMIEAA 525

Query: 492 IHIAQFCSPH--DFFTLILGAKKGRQQFISRFGNEVIDVL--DEFLNFTLRNEQNSYSSL 547
             + +  S         +   ++     I+R   E ++ +  DE  +            L
Sbjct: 526 RGLCESLSVAVEPLAPFVTANRRTDIGEIARATVEALENMARDETGSVAAFYSGERGEKL 585

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +  L      +               +  A      V        ++F    ++   
Sbjct: 586 ASFLRGLISSEAELDFEAMEWP------AILDALMAGETVKPHPGGHPRLFIWGALEARL 639

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG----MTRASDQLI 663
                    G+      +K+RN+           +      R         M    D ++
Sbjct: 640 QTVDAIVIGGLNEGSWPTKTRNDPFMSRPMKAMIALDPPERRTGLAAHDFQMALGMDHVV 699

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           + +   + N      R    +             +          +I +       E+ P
Sbjct: 700 LTRSQRSDNAPTVPSRWLQRL------ETVLGADVTNEMRGRGTRFIHWSREIDRAEDVP 753

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
             R+    +         K FS  + +                   LE L+ D     RG
Sbjct: 754 FVRK---PEPAPPVAARPKHFSVTEIETLRRDPYAIFAKKILKLRPLEPLIRDPAAAERG 810

Query: 784 LIIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLSIT---------RLLE 833
            + H +L             +           L+   +    + ++          + L+
Sbjct: 811 TLFHDILGHFTQAAIDPLAPDAAEKLMELGRILFADMDLPLEIEAVWWPRFTALIPQFLQ 870

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHV 889
                     + ++E++ S K       I +SGR D+I  +      I +YKT    
Sbjct: 871 WERERAYKVQERFAEIA-SQKREVENLGITLSGRADRIDLMRDGTAEIIDYKTGSTP 926


>gi|312139712|ref|YP_004007048.1| recb family exonuclease [Rhodococcus equi 103S]
 gi|311889051|emb|CBH48364.1| RecB family exonuclease [Rhodococcus equi 103S]
          Length = 295

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 32/239 (13%)

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIH 787
                       ++       L+PS      +  L            + ++   +G ++H
Sbjct: 3   PAPATDGAGRADESGRPRRLALSPSRAGDFKQCPLLYRFRAIDRLPETPSKAQVKGTVVH 62

Query: 788 KLLQVIFTLPEHKR---------KNFITSYCT---KNAKLWPAKEYKNLLLSITRLLENP 835
             L+ +F LP  +R         +           + A+L    +    L    RL+ N 
Sbjct: 63  AALEALFALPAGERVADRAKELVEPAWDRVLADSPELAELIGPADRGQFLTDARRLIAN- 121

Query: 836 MMTTAMSCDSYSEVSVSGKINCP-KKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEI 893
                     +   +   ++       +++ G +D++ +S   +  + +YKT        
Sbjct: 122 -YYRLEDPTRFDPEACELRVETELDDGVLLRGFVDRVDVSPTGLVRVVDYKTGRAP---W 177

Query: 894 EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF---IIPQNKL--NKAFAEI 947
           E      + Q+  Y  +L  +         L+Y+ + +      +    L   +  + I
Sbjct: 178 ELSESKALFQMKFYALVLLRTRGVVPARLQLLYLGDGQTLTYDPVEDELLRFERTLSAI 236


>gi|295839794|ref|ZP_06826727.1| RecB family exonuclease [Streptomyces sp. SPB74]
 gi|197697732|gb|EDY44665.1| RecB family exonuclease [Streptomyces sp. SPB74]
          Length = 284

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 66/226 (29%), Gaps = 36/226 (15%)

Query: 757 LNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS- 807
           ++PS      +  L              ++   RG ++H +L+ +F  P  +R       
Sbjct: 1   MSPSRAGDFMRCPLLYRFRVIDRLPEKPSEAATRGTLVHAVLERLFDAPAGERTAERARA 60

Query: 808 -----YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-CDSYSEVSVSGKINCPKK- 860
                +    A      E                +   ++  +   E   + +     + 
Sbjct: 61  LLPGQWEKLRAARPELDELFAGTAGGDAAAAGERLAEWLASAERLIERWFTLEDPTRLEP 120

Query: 861 -------------DIIISGRIDQISISQ--QNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
                         + + G ID+I ++    ++ I +YKT      +        + Q+ 
Sbjct: 121 AERELFVETALDSGLRLRGIIDRIDVAPATGDVRIVDYKTGKAPRPQYAEEA---LFQMK 177

Query: 906 IYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            Y  ++            L+Y+    V  +  + +      +  K+
Sbjct: 178 FYALVVWRLKGVLPRRLQLVYLGSGDV--LTYDPVQGDLERVERKL 221


>gi|326790760|ref|YP_004308581.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326541524|gb|ADZ83383.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 1131

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 71/653 (10%), Positives = 161/653 (24%), Gaps = 124/653 (18%)

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           S +    ++A  I  ++  +           +  D+ V+V    D      L      +Y
Sbjct: 312 SRAEEVEQVAKQIVTLVMEE---------GYRYHDMAVIV---GDLADYKTLLEGAFKEY 359

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF----KI 456
           +I    + +  +  +  +  L  +   + S     S + +L++ +   S ++I      +
Sbjct: 360 EIPYFLDMKRNIHTNSLVAALEGVLEVLTSNYSYKSIMGLLRTQILPISIEEIDLLENYL 419

Query: 457 CTQRHETETVYEYIQKFANCGISKFQH-----------------------------VIKY 487
                + +  +     F      K                                V+  
Sbjct: 420 LAYGIKGKKKWAQPWGFDQKDEEKQARINITREAILGPIQKLEMTIQMTKSSGKNKVVDL 479

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQ-QFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
              L    +    +     I+   K    + +     ++   + E     +        S
Sbjct: 480 TKALYGFLEDIGAYSKLNEIIAKHKAEGNRLLEIENTQIWGKIMEVFERLVDILGEEELS 539

Query: 547 LQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           L      LE               ++V I +V   +       F++ T   V        
Sbjct: 540 LMTYRRILETSFSYVKMGVIPPAQDQVLIGSVDRTRLPRLKACFILGTNEGVIPKVDETT 599

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                                        L + +           +Y  +TRA+++L + 
Sbjct: 600 PIFSDMDKASLSQMCK-----EDKGPKGRLNELIIDQPLYGGQFSIYSMLTRATEKLFVS 654

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSF-HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                 N K       Y  +   F    + ++   L+          Y  +         
Sbjct: 655 AAMADENGKPLRTSLVYYKLKKLFGETPKPLQGDFLSQIYRPLPTFGYVGNLLREYVEGR 714

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINE---------------------PYILNPSTID 763
             EE  K L+       +    +K   +                          + S ++
Sbjct: 715 LEEEAWKDLVSWYATKDEWKDRLKGLTDYLFYTNQQHYLQEETTHLLYGNKLDTSISKLE 774

Query: 764 TKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIF--------TLPEHKRKNF 804
           T  +              E  L        G + H  L+           T  +  R+  
Sbjct: 775 TFRQCACCYFMRYGIKAEERRLFRFDRAKVGTLFHAALEQYPKELSLMNTTWTKATREEM 834

Query: 805 I---------------TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
                            +        + A + + +       L   +         Y E+
Sbjct: 835 QQGVKKATAYAVEQVNEAQRETGRFQFTAAKVEKMTSRAIHALTAHLKNGEFEPMGY-EI 893

Query: 850 ---------SVSGKINCPKKDIIISGRIDQI---SISQQNIF--IFEYKTHHH 888
                     +   I+   + I+++G+ID++          +  I +YK+   
Sbjct: 894 NFGEGKGFPPIEIAID-EVRTILVTGQIDRVDVYYKDDNQQYIKILDYKSGQK 945


>gi|269218415|ref|ZP_06162269.1| RecB family exonuclease [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211526|gb|EEZ77866.1| RecB family exonuclease [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 304

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 71/235 (30%), Gaps = 39/235 (16%)

Query: 750 DINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
           D++    L+PS      +  L              +    RG ++H +L+ ++  P   R
Sbjct: 5   DMSRHAALSPSRAKDFKQCPLMFRFRTVDRLPEPPSLEALRGTLVHSVLEHLYDGPAAAR 64

Query: 802 KNFIT------SYCTKNAKLWPAKEYKNLLLSITRLLENPMM---------TTAMSCDSY 846
                       +          ++       +   L +                   + 
Sbjct: 65  TEEAAQGLLLPRWNAHLESKPRDRDLFEGPAHLETWLGSARTLIGNYFRMENPTFIEPAA 124

Query: 847 SEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLS 905
            E  V+ ++      + + G +D+I  +      I +YKT        +      + Q+ 
Sbjct: 125 REQFVNARLAS---GLAVRGIVDRIDEAPNGALRIVDYKTGKSPGPRFQDEA---LFQMR 178

Query: 906 IYEKILKDSYPNKSLVCLLIYVSEPKVF---IIPQN------KLNKAFAEISTKI 951
            Y   +  S    +    +IY+ + +      +P +      +L+  +  I  ++
Sbjct: 179 FYTAAIALSRGKLARRTQIIYLKDGRTLTYDPVPDDVDAVVFELDSIWNAIEERL 233


>gi|221641018|ref|YP_002527280.1| RecB family exonuclease-like protein [Rhodobacter sphaeroides
           KD131]
 gi|221161799|gb|ACM02779.1| RecB family exonuclease-like protein [Rhodobacter sphaeroides
           KD131]
          Length = 982

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/391 (9%), Positives = 100/391 (25%), Gaps = 32/391 (8%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
           ++   G      ++E         + + +   +L   +        R       ++ I  
Sbjct: 488 WLKEAGEAARAAVEELRREAPHGGELTPADYADLFDAILARGE--VREAVQARPDLMIWG 545

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
              A+   + +V L       +         +   +    G+ +   +     +  S  +
Sbjct: 546 TLEARVQGADLVILGGLNDGTWPQLPPPDPWLNRQMRLKAGLLLPERRIGLSAHDYSQAV 605

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +            V +TRA              E ++    W + + +     +   
Sbjct: 606 AAPE------------VVLTRA----------TRDAEAETVPSRWLNRLMNLMSGLKAGG 643

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             +    +        + +    +        T            +  +           
Sbjct: 644 GPEALAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVPARPERLAVTGIRTLIRDP 703

Query: 757 LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKL 815
                        L+ L        RG I+H++L+           +    +   + A+ 
Sbjct: 704 YAVYARHILRLYPLDPLHRAPDARLRGSILHRILEAFVKDRAPGGDRPAERARLMRIAEA 763

Query: 816 WPAKEYKNLLLSITRLLENPMMTTAM----SCDSYSEVSV--SGKINCPKKDIIISGRID 869
             A+E          L              +  + + V +   G+++       ++ + D
Sbjct: 764 VLAEEVPWPAARALWLARLDRAADFFLETEAAHAGTPVVLEEEGRVDLTPLRFTLTAKPD 823

Query: 870 QISIS-QQNIFIFEYKTHHHVPQEIEHIPYT 899
           +I +     + I +YKT     ++ +     
Sbjct: 824 RIDVLPDGRLHILDYKTGTPPTKKQQEQFDK 854


>gi|213400869|gb|ACJ47083.1| hypothetical protein [Wolbachia endosymbiont of Armadillidium
           vulgare]
          Length = 157

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++    +    G+ +   +L  SFRST ++L +VD++F+     +     + 
Sbjct: 1   NPHLFNYMQQYFYTKTG--GRDWISCQLEKSFRSTPEVLMLVDRIFNN---FREEISFND 55

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             I+H   R    G +++W  +    + +    Q   T   D +  +    +LA+ IA  
Sbjct: 56  NEIKHVPHRENDQGYIEIWPLLPRYKEEEQQVLQIHLTQRKDYVVTD---RLLAQAIARR 112

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           I N +    I    K R I+ +DI++LVR+R 
Sbjct: 113 IHNWLNEGRIL-VAKDRHIEPRDIMILVRQRN 143


>gi|169629241|ref|YP_001702890.1| hypothetical protein MAB_2155c [Mycobacterium abscessus ATCC 19977]
 gi|169241208|emb|CAM62236.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 293

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 71/222 (31%), Gaps = 37/222 (16%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
            ++       L+PS      +  L              +    RG ++H  L+ ++T P 
Sbjct: 5   TRDRPVRRPALSPSRASDFKQCPLLYRLRAIDRLPEPPSAAQARGSLVHAALEDLYTRPA 64

Query: 799 HKR---------KNFITSYCT---KNAKLWPAKEYKNLLLSITRL------LENPMMTTA 840
            +R         +           + A++  A+           L      LE+P     
Sbjct: 65  AEREYATAAGLVEPAWERLVESNPELAEVVEAERLPRFFDEARDLLSGYYRLEDPT---R 121

Query: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPYT 899
              DS  E  V  ++       ++ G ID+I I+      + +YKT        E     
Sbjct: 122 FDPDS-CEERVEVELA---DGTMLRGFIDRIDIAPGGAMRLVDYKTGRAPRALFEAKA-- 175

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
            + Q+  Y   L  +         L+Y+S+ +V     ++  
Sbjct: 176 -LFQMKFYAVALYRTRGVVPRRLRLLYLSDGEVLDYAPDEAE 216


>gi|227496042|ref|ZP_03926353.1| RecB family exonuclease [Actinomyces urogenitalis DSM 15434]
 gi|226834435|gb|EEH66818.1| RecB family exonuclease [Actinomyces urogenitalis DSM 15434]
          Length = 271

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 69/218 (31%), Gaps = 30/218 (13%)

Query: 757 LNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-- 806
           ++PS      +  L              +   ++G ++H +L+ ++ LP  +R       
Sbjct: 1   MSPSRAKDFMQCPLMFRLRTVDRLPEPGSLATHKGTLVHAVLERLYDLPAPERTLEAAVG 60

Query: 807 ----SYCTKNAK-------LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
                +     K           ++    L     LL         +            +
Sbjct: 61  MLPGQWEAHREKNPVVMDLFDSPQDVAPWLEEARALLRT--YFQMENPTRLEPSERELFV 118

Query: 856 NCP-KKDIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
               +  +++ G +D++ ++      + +YKT        +H     + Q+  Y  +L  
Sbjct: 119 QTETRSGLLLRGFVDRLDVAADGAMRVVDYKTGKSPAPRFQHDA---LFQMRFYGLVLWR 175

Query: 914 SYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                     L+Y+ + ++  +  + +      + T++
Sbjct: 176 LRGQAPRRLQLVYLKDGRI--LTHDPVLAELEGMETRL 211


>gi|213400883|gb|ACJ47090.1| hypothetical protein [Wolbachia endosymbiont of Coptotermes
           acinaciformis]
          Length = 157

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 9/152 (5%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++    +    G+ +   +L  SFRST  ILT+VD++F+     +       
Sbjct: 1   NPHLFNYMQQYFHTKTG--GRDWISCQLEKSFRSTPHILTLVDRLFNN---FREEISFVD 55

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
           + I+H   R    G +++W  +    + +    Q   T   D +    +  +LA+ IA+ 
Sbjct: 56  SEIKHIPHRENDQGYIEIWPLLPRCKEEEQQALQIHLTQRKDYV---IAERLLAQAIAHK 112

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           + N +    I    K R I+ +DI++LVR+R 
Sbjct: 113 VHNWLNEGRIL-VAKDRHIEPRDIMILVRQRN 143


>gi|118466570|ref|YP_881596.1| RecB family protein exonuclease [Mycobacterium avium 104]
 gi|118167857|gb|ABK68754.1| RecB family protein exonuclease [Mycobacterium avium 104]
          Length = 301

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 64/228 (28%), Gaps = 26/228 (11%)

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
             +       P    S      +         +  + +       + +    RG ++H  
Sbjct: 4   QPEARQSAARPAGQVSRPALSPSRAADFKQCPLLYRFRAIDRLPEAPSPAQLRGSLVHAA 63

Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT------------------RL 831
           LQ ++ LP  +R           A          L   +                     
Sbjct: 64  LQQLYELPAAQRGPETALALVGPAWEQLLAATPELTADLDPTQHGQLLAEAQALLAGYYR 123

Query: 832 LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVP 890
           LE+P            E  V  ++       ++ G ID+I ++    + + +YKT    P
Sbjct: 124 LEDPT---RFDPQC-CEERVEVELA---DGTLLRGFIDRIDVAATGELRVVDYKTGKAPP 176

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                  +  + Q+  Y   L  S         LIY+++ +V      
Sbjct: 177 AARALAEFKAMFQMKFYAVALLRSRGVPPTRLRLIYLADGQVLDYSPE 224


>gi|229167363|ref|ZP_04295101.1| UvrD/Rep helicase [Bacillus cereus AH621]
 gi|228615925|gb|EEK73012.1| UvrD/Rep helicase [Bacillus cereus AH621]
          Length = 700

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 467 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 515

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 516 --IEDWNAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPV 565

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +                +  D           A     
Sbjct: 566 FRSGEDVKVIPAEDQFTEVLKTLQHLQTEDVKTIAVIGRT-DDECRDIYEKLTNAELTVN 624

Query: 352 TISN 355
            I  
Sbjct: 625 VIEA 628


>gi|167761629|ref|ZP_02433756.1| hypothetical protein CLOSCI_04041 [Clostridium scindens ATCC 35704]
 gi|167660772|gb|EDS04902.1| hypothetical protein CLOSCI_04041 [Clostridium scindens ATCC 35704]
          Length = 1141

 Score = 78.8 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 63/680 (9%), Positives = 187/680 (27%), Gaps = 94/680 (13%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  +A  I  ++  +           + ++I V+V    +  +           Y+I
Sbjct: 319 KEEAMAVAGAIRALVRKE---------GYRYREIGVIV---SNMDVYGDDLEQAFAMYEI 366

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--- 459
               + +  +  +  ++ + +L           S    L++ L  F+ D++ ++      
Sbjct: 367 PAFMDHKRSILLNSFVEYIRSLLDMAEQNFTYESVFRFLRTNLAGFNFDEVDRLENYVIG 426

Query: 460 --RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF---------FTLIL 508
                 +   E   +       +    + +   ++        +            T+ L
Sbjct: 427 LGIKGYKRWQEKWVRRLKGMEEEELEALNHCRIILVEKVDGLLYVLKQRSKTVRDITMAL 486

Query: 509 GAKKGRQQF------------------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
                R+                    +++   +V  ++ E  +  +    +   SL E 
Sbjct: 487 YEFMVREDLQVKLAALEERFQAEGKLALAKEYAQVYRIVIELFDKFVELLGDEKVSLNEY 546

Query: 551 ISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK-KMHI 608
              L+      +        ++V    V   +  +   +F V           ++  +  
Sbjct: 547 CKLLDAGLEEARVGVIPPSVDQVVAGDVQRTRLKDIKALFFVGANDTYLPGSLLRTGLLS 606

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV---GMTRASDQLIIC 665
                      + +         +     ++  +   E   + Y       ++     + 
Sbjct: 607 ERDREKFARERLSLSPGGKEQAYIQKFYLYMNLTKPSEQLNIYYSKVSADGKSIRPSYLI 666

Query: 666 KHSNT-----SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +         S + +  +      + +       ++  +         W           
Sbjct: 667 QELRRLFPLLSVQDEEGRALALREITEKMGIGYLIRGFQGNGEGMDAAWKELYTWYKKSP 726

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL---------- 770
               + E  IK     + +     +  K    E +  + + ++                 
Sbjct: 727 KWQSKVESLIKAGYYRRPMDGLTEAVAKRLYGEEFEDSITRMERFQTCAFAHFLTYGLNL 786

Query: 771 -ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT 829
            E    D Q  + G + H  L+      E +   ++     K A        + +     
Sbjct: 787 QERQEYDFQAVDMGNVCHNALERFSRKVEKEGCGWVGLKEEKRASFIDESVEEAITDYGN 846

Query: 830 RLLENP--------MMTTAMSCDSYSEVSVSGKINCPK------KDIIISGRIDQI--SI 873
            +L +          M   +    ++   ++ +++         +    +G+ID+I    
Sbjct: 847 SVLYSSARNEYMIVRMKRMLERTVWA---LTKQLSAGDFQPSAYEFRFANGKIDRIDTCE 903

Query: 874 SQQNIFI--FEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLV--CLLI 925
               +++   +YKT       +  + +    QL +Y +      +  +  + +V   +  
Sbjct: 904 DGDKVYVKVLDYKTGSKAFDVVA-LYHGLQLQLMVYMEAAVKAEQKKHKEQEVVPAGVFY 962

Query: 926 Y-VSEPKVFIIPQNKLNKAF 944
           Y + +P V    +  + +A 
Sbjct: 963 YRIQDPLVDKQEEAAVEEAL 982


>gi|147678000|ref|YP_001212215.1| ATP-dependentnuclease subunitB [Pelotomaculum thermopropionicum SI]
 gi|251764609|sp|A5D1P4|ADDB_PELTS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|146274097|dbj|BAF59846.1| ATP-dependentnuclease subunitB [Pelotomaculum thermopropionicum SI]
          Length = 1157

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 68/668 (10%), Positives = 156/668 (23%), Gaps = 122/668 (18%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I+ +            R  + +DI++L+R   D      L   +  D+ I V  
Sbjct: 324 EGVAREITALCRD---------RGYRYRDIVILLR---DVDSYAGLISSIFADHGIPVFI 371

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT-------- 458
           + +  +  H  ++ + +    +            LK+ L   S +++  +          
Sbjct: 372 DQKRPVMHHPMVELVRSALEAVTEDWAFDPVFRYLKTDLVPLSREEVDLLENYVLAHGIR 431

Query: 459 -QRHETETVYEYIQKFANCGIS----------------KFQHVIKYIHELIHIAQFCSPH 501
             R      +EY ++                       + Q     +       Q  +  
Sbjct: 432 GSRWTDGRPWEYRRELTLEEDPGLNGSESVELEKVNRIRHQATADLLEFCRSFMQAKNVR 491

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
           +  T +     G +              +  L     +          L   +E     +
Sbjct: 492 EMSTALFNLLTGLKVPEQLESWSRQAEKEGRLEAAREHSLVWSGFTALLDQVVEALGDEV 551

Query: 562 KRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                     +                 V +               +  +          
Sbjct: 552 LEPGEYAAVIDAGLESLRLGLIPPGLDQVLVASLERSRNPEMRAAFVMGVNDGVLPARTF 611

Query: 620 IWIPQSKSRNNIVSDLIKHLK---KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                S      +      L    +    E   L+Y+ +TR+S+++ +         +  
Sbjct: 612 DQGIFSDLERERLKAAGLELAPGGRRKFFEEQYLVYIALTRSSERIYLSYPLADGEGRAL 671

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                   V +   + E        N+   D+                +  E       +
Sbjct: 672 MPSPIVARVKELLPDVEERVWPVEPNAALLDDLEFVTGPRRTLSYLASQMREFKAGRRID 731

Query: 737 QKIPKKLFSPIKNDINE-----------------------------PYILNPSTIDTKGK 767
                        ++ E                             P   + S ++    
Sbjct: 732 PLWWDVYSWFAAGEMREHCKRVLSGLFHSNREDRLPPAVSMALYGRPLRASVSGLEKFRA 791

Query: 768 TNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH---KRKNFITSYCTKNA 813
                         E  +      + G   H  L++                   C + A
Sbjct: 792 CPFAHFLSYGLKLKERAIFKLDAPDLGRFFHAALKLFGDRVREQGLDWGQLDREQCQEMA 851

Query: 814 K--------------LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS----EVSVSGKI 855
                          L      + L   + R ++   +   ++  S       V +    
Sbjct: 852 GEVVDLLAPRLSSEILLSTARRRYLTGKLRRTVQRAAL--VLAEHSRRSKFRPVGLELSF 909

Query: 856 NCPKK------------DIIISGRIDQISI--SQQNIF--IFEYKTHHHVPQEIEHIPYT 899
                            ++ +SGRID+I    S + ++  I ++K+     + +  I + 
Sbjct: 910 GPDGDLPAPVFTLADGSEMAVSGRIDRIEAAPSDEGVYLRIIDFKSGKVTVK-LTDIYHG 968

Query: 900 HIAQLSIY 907
              QL  Y
Sbjct: 969 LKLQLLAY 976


>gi|146278984|ref|YP_001169143.1| exonuclease-like protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145557225|gb|ABP71838.1| RecB family exonuclease-like protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1000

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/392 (10%), Positives = 107/392 (27%), Gaps = 34/392 (8%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
           ++   G      ++E         + + +   +L   +        R     H  + I  
Sbjct: 509 WLKEAGEAARAAVEELRREAPHGGELTTADYTDLFDAILARGE--VREAVQAHPGLMIWG 566

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
              A+   + +V L       +         +   +    G+ +   +     +  S  +
Sbjct: 567 TLEARVQGADLVILGGLNDGTWPQLPPPDPWLNRQMRLRAGLLLPERRIGLSAHDYSQAV 626

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                                A+ ++++ + +  +  +    R    ++        +  
Sbjct: 627 ---------------------AAPEVVLTRATRNAEAETVPSRWLNRLMNLMSGLKAQGG 665

Query: 697 KIKLTN-SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
              L         W+A   +   PE           Q     +  +   + I+  I +PY
Sbjct: 666 PEALEAMRARGRGWLALASALEQPEAPVPLAARPAPQPPVSARPDRLAVTGIRTLIRDPY 725

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAK 814
            +    I       L+ L        RG I+H++L+           +    +   + A+
Sbjct: 726 AIYARHI--LRLYPLDPLHRAPDARLRGSILHRILEEFVKDRAPGTDRAAERARLMRIAE 783

Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAM----SCDSYSEVSV--SGKINCPKKDIIISGRI 868
                E          L              +    + V +   G+++       ++ + 
Sbjct: 784 TVLTDEVPWPAARALWLARLDRAADFFLETEAAHGGTPVVLEEEGRVDLAPLRFTLTAKP 843

Query: 869 DQISIS-QQNIFIFEYKTHHHVPQEIEHIPYT 899
           D+I       + I +YKT     ++ +     
Sbjct: 844 DRIDRLPDGRLHILDYKTGTPPTRKQQEQFDK 875


>gi|269126538|ref|YP_003299908.1| RecB family exonuclease-like protein [Thermomonospora curvata DSM
           43183]
 gi|268311496|gb|ACY97870.1| RecB family exonuclease-like protein [Thermomonospora curvata DSM
           43183]
          Length = 311

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 64/228 (28%), Gaps = 42/228 (18%)

Query: 756 ILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR------ 801
            L+PS         L              +    RG ++H +L+ ++ LP  +R      
Sbjct: 25  ALSPSRAGDFMTCPLLYRFRVIDQIPERPSPAAVRGTLVHAVLERLYDLPAAERTVEAAV 84

Query: 802 ---KNFITSYCTKNAKLWP--------------AKEYKNLLLSITRLLENPMMTTAMSCD 844
                       +   L                    +     + R              
Sbjct: 85  ALLGPQWERLLAEEPDLAAMFAPEAADDPDADQEAWMERARQMVERYFTLEDPRRL--EP 142

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
           +  E+ V   +    K   + G ID++ I+    I I +YKT      + E      + Q
Sbjct: 143 AERELYVETVLESGLK---LRGYIDRVDIAPTGEIRIVDYKTGTAPRADFEARA---LFQ 196

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           +  Y  ++   Y     +  L+Y+   +V     +           K+
Sbjct: 197 MKFYALVVWRLYGAVPRMLQLMYLGNGEVLRYVPD--EAELRATQRKV 242


>gi|255655058|ref|ZP_05400467.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-23m63]
 gi|296451045|ref|ZP_06892787.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP08]
 gi|296880602|ref|ZP_06904564.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP07]
 gi|296260052|gb|EFH06905.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP08]
 gi|296428556|gb|EFH14441.1| ATP-dependent nuclease subunit B [Clostridium difficile NAP07]
          Length = 1155

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 102/917 (11%), Positives = 248/917 (27%), Gaps = 204/917 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   +E    +   +D         D+L        +   +D     + IDE    +  Q
Sbjct: 164 IYNSFEGKLHE-NYVD-------AQDMLTSLASKIELSSYLDG--ACVYIDEFTGFTPNQ 213

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + VI+S+         + S   +L     +  +   +  A+     +      K      
Sbjct: 214 YNVIKSIL------NKSKSVNISLTV---DDVNYTGYSKADMFSRTKF--TYSKLTQLCN 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           ++   I   ++         +   V    E  + L                    ++ + 
Sbjct: 263 EEGIKILPQVN---------LNTGVIKRFEKVKELQH------------------LERFY 295

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +      + +   +          IA  I +++           + ++
Sbjct: 296 NAYPYKIYSKQTENIKIKEFNNLYSEVEE-------IAREIVHLVRE---------KNVR 339

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +  R   D     FL   + N+Y I    + +     +  +  +++       + 
Sbjct: 340 YRDITIATR---DLNRYDFLVHSIFNEYNIPNFIDKKREAKSNPIVILIISALEMKNRRY 396

Query: 433 DDLSFVCMLKSPLFNFSEDDI-----------------FKICTQRHETETVYEYIQKFAN 475
              +    LKS L     DDI                 F        T+++     +F  
Sbjct: 397 GYETMFRYLKSGLIGIDNDDINVLENYVLANGIKGKKWFDEKWDYRITQSLSGEESEFEL 456

Query: 476 CGISKFQHVIKY---------------------IHELIHIAQFCSPHDFFTLILGAKKGR 514
               K   +                           +       +  +    ++   K +
Sbjct: 457 ELKDKINEIKNRVLEPIVTLQEKLKGKNRVKEICRYIYEFLLDINMPETIESLIVNFKDK 516

Query: 515 QQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEV 572
            +  ++   ++V D++ + L+  +    +   SL++ I  +       +        ++V
Sbjct: 517 GELDVANQYSQVWDIVVDILDQMVELMGDEIISLEKFIKLITLGFDEYELGLVPPSIDQV 576

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            + +V   K  ++  ++LV T   VF         +  +  +  G         S+    
Sbjct: 577 LVSSVDRMKNPDTKYLYLVGTTDGVFPLITKDSGILSDNDRESLGNKGIEVDIDSQTRSF 636

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                        E   L+Y  +T  S  L I    +    K          +   F N 
Sbjct: 637 -------------EEQFLVYKALTSTSKNLTITYPISDHEGKTLRPSIIISRLKKIFPNI 683

Query: 693 ERVKKIKLTNSINKDEWIAYE----------------------------------WSTHH 718
           E    +   N    ++ +                                     +  + 
Sbjct: 684 ENKSYLVEENKSTDEDILKKITVKSPTFNELINVIKNYDSDGYNKEEINSIWLDIYRYYL 743

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-DN 777
            +       + + + +       ++       + +   L+ S ++   +      +    
Sbjct: 744 KDEIYSSITKKVIKGLSYTNQVHRIEEKKIRSLYKSNSLSISRLEKYAECPFAYFIQYGL 803

Query: 778 QTFNR----------GLIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLW-------- 816
           +   R          G  IH +L              +     Y      +         
Sbjct: 804 KARKRKEYSFTPPDLGTFIHNILDRFSKELLQDNLSWRGIDEKYIELKIGIIVDEIILKI 863

Query: 817 ------PAKEYKNLLLSITRLLENPM--MTTAMSCDSYSEVSVSGKINCPKK-------- 860
                  ++ YK L   +  +L   +  ++  +   S+  +    K     K        
Sbjct: 864 PGYILNSSERYKYLAYRLKNMLTTAITIISQQIKQGSFEPIDYEVKFGDNGKYPPIKIVL 923

Query: 861 ----DIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
               ++ + G+ID++   ++     I I +YK+  +    +  I Y    QL +Y   + 
Sbjct: 924 ENGQEVSLIGQIDRVDEFEEGENKYIRIVDYKSG-NKSISLTEIYYGLQLQLLVYLDAIL 982

Query: 913 DSYPNKSLV---CLLIY 926
           +S  +K +      ++Y
Sbjct: 983 ESAKDKDININPAAILY 999


>gi|77462065|ref|YP_351569.1| putative helicase/exonuclease [Rhodobacter sphaeroides 2.4.1]
 gi|77386483|gb|ABA77668.1| putative Helicase/Exonuclease [Rhodobacter sphaeroides 2.4.1]
          Length = 997

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/392 (9%), Positives = 100/392 (25%), Gaps = 34/392 (8%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
           ++   G      ++E         + + +   +L   +        R       ++ I  
Sbjct: 503 WLKEAGEAARAAVEELRREAPHGGELTPADYTDLFDAILARGE--VREAVQARPDLMIWG 560

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
              A+   + +V L       +         +   +    G+ +   +     +  S  +
Sbjct: 561 TLEARVQGADLVILGGLNDGTWPQLPPPDPWLNRQMRLKAGLLLPERRIGLSAHDYSQAV 620

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
              +            V +TRA              E ++    W + + +     +   
Sbjct: 621 AAPE------------VVLTRA----------TRDAEAETVPSRWLNRLMNLMSGLKAGG 658

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             +    +        + +    +        T               +           
Sbjct: 659 GPEALAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVPARPDRLAVTGIRKLIRDP 718

Query: 757 LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCTKNAK 814
                        L+ L        RG I+H++L+       P   R     +   + A+
Sbjct: 719 YAVYARHILRLYPLDPLHRAPDARLRGSILHRILEAFVKDRAPGSDRPTE-RARLMRIAE 777

Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAM----SCDSYSEVSV--SGKINCPKKDIIISGRI 868
              A+E          L              +  + + V +   G+++       ++ + 
Sbjct: 778 AVLAEEVPWPAARALWLARLDRAAAFFLETEAAHAGTPVVLEEEGRVDLTPLRFTLTAKP 837

Query: 869 DQISIS-QQNIFIFEYKTHHHVPQEIEHIPYT 899
           D+I +     + I +YKT     ++ +     
Sbjct: 838 DRIDVLPDGRLHILDYKTGTPPTKKQQEQFDK 869


>gi|320329788|gb|EFW85776.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 556

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 68/449 (15%), Positives = 140/449 (31%), Gaps = 84/449 (18%)

Query: 2   KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
           +    +S                                     + +  Q L +  + + 
Sbjct: 66  RRILAISFKRDAASNLAARVRKRCHSSHASRFDSMTFDAFAKGLLDRFGQALPEFWRPRP 125

Query: 62  IEE---RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
             E    +      FL     +P  +I T+   +          KS +    +       
Sbjct: 126 GYEITTYYERDYRNFLDLIAGSPPGDIGTKASLRAIGA------KSFERKHLLGAPLPVA 179

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              K  +A   +A+    HY   + K  VL F  +I    +LL +  ++  +R  +    
Sbjct: 180 AWPKPDVAQWAMAR--FWHYSLHEGKKSVLTFP-MIGRLVELLLR--INPMVRDALRLTY 234

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
           +H+ +DE QDT+ +Q++++ ++            +   + AVGD KQ I  +  A     
Sbjct: 235 SHLFMDEFQDTTQVQYDLVHTIF---------CGTDTVVTAVGDNKQQIMRWALAMDDPF 285

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                                 L  ++RS+ D++                       I+H
Sbjct: 286 SEFDADFGGL---------RTTLFNNYRSSPDLVR----------------------IQH 314

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             ++    G ++   Q     D +            D    ++ A  LA+ I+  I++  
Sbjct: 315 VLAQALDSGAMEPISQTEGTIDGES-------CVILDFPSPKTEARHLAKTISAAIAD-- 365

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV---GNDRFILTD 414
                      + +  +D +VLVR++        + R       +S+    G    I+  
Sbjct: 366 -----------KKLLPRDFVVLVRQKAG--DYADVLRPAFEAEGLSLRNEAGTAGQIMLQ 412

Query: 415 HLAIKD----LMALGRFILSQEDDLSFVC 439
            L  +D    L++L R  ++      +  
Sbjct: 413 ELMTEDLSKHLVSLLRLAMNPRAGRHWSN 441


>gi|310826444|ref|YP_003958801.1| ATP-dependent nuclease subunit AddB [Eubacterium limosum KIST612]
 gi|308738178|gb|ADO35838.1| ATP-dependent nuclease subunit AddB [Eubacterium limosum KIST612]
          Length = 1123

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 76/711 (10%), Positives = 183/711 (25%), Gaps = 140/711 (19%)

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
              + A  I  ++           R  + +DI+VL     D        +   ++Y I  
Sbjct: 315 EVEKGAQKIVELVRE---------RDFRYQDIVVLA---GDMETYGGAIKRAFSEYGIPF 362

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
             +D   +T++  ++ ++A      S          +K+     + ++  ++     E  
Sbjct: 363 FMDDVKKVTENNFLEAVLAALETNRSHYAYEDIFTFVKTGFAPITPEEAQELENYVIEYG 422

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-------- 516
                 +K  +   +     ++ ++         +P      IL   +            
Sbjct: 423 IRGNAWEKPFDRPSANEAVSLEALNASRERL--MAPFMTLRKILRKSRTYADKTRSLVRF 480

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS-----LQELISELEQYPPTIKRAHSA---- 567
                  E ID L E L      +     +     L E+  ++                 
Sbjct: 481 LEDIKAPETIDGLSEALRERGDFDSMGLYNQIWNILMEVFDQINSTMGGESTTLEEYISV 540

Query: 568 ---------------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                            + V I  +  ++  E   + +      V               
Sbjct: 541 LSGGFQSYTVGVIPNRQDVVNITDLMRSRHSEMKALLVFGMNEGVIPANS---------- 590

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
              P   +   + +S+       ++      + + + LLY      SD L +      + 
Sbjct: 591 ---PSFNLLSERERSQLRKQEMALQDNSDFRRAQEDFLLYSLFAAPSDYLYLSYSMADAE 647

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE------------WSTHHPE 720
                       +   F        ++ T S   +                         
Sbjct: 648 GSTIPVSPLIPRIQAVFPKLTVTSALENTLSKEWEAVATPRGTISSLIDHLRELRYGKGT 707

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIK---------------------NDINEPYILNP 759
             P E +   + +        +  +  +                          P   + 
Sbjct: 708 VMPEETKRLWQAVGKWYDEDARYHTAFRQIQEALDYDGVDDCLSQGQAIRLFEPPIQASV 767

Query: 760 STIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLL---------QVIF--TLP 797
           S ++   K                   + +  + G ++H L+         + +    L 
Sbjct: 768 SRLELYRKCPFSHYVAYGLRPVPRQEYEVEPPDIGTVLHHLIDAVYKEAEREQVSVKDLS 827

Query: 798 EHKRKNFITSYCTKNAKLWPAK-------------EYKNLLLSITRLLENPMMTTAMSCD 844
           + K    + +   +       +             + + +     R+L + M        
Sbjct: 828 QEKTDAMVDAILDETLPQVRHQVFNSTGQYQYLGRKLRRVSKRTVRVLVDHMRRGEFDFK 887

Query: 845 SYSEVSVSGKINCP--KKDIIISGRIDQISI---SQQNIF-IFEYKTHHHVPQEIEHIPY 898
            YSE   S  +  P  ++ + + G ID+I +          + +YK+  +    +  I Y
Sbjct: 888 -YSEQQFSQILELPSFEETVRVRGVIDRIDVYQREGDTFVKVIDYKSG-NKTLNLAEIYY 945

Query: 899 THIAQLSIYEKILKDSYPNK---SLVCLLIYVSEPKVFI--IPQNKLNKAF 944
               QL++Y +   +               +V +P + +  +    L  A 
Sbjct: 946 GLSLQLAVYMEAGIEILEGDNLIPGGTFYFHVDDPMLQVNKLDPETLTAAL 996


>gi|195940703|ref|ZP_03086085.1| exonuclease V subunit beta [Escherichia coli O157:H7 str. EC4024]
          Length = 308

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 68/248 (27%), Gaps = 44/248 (17%)

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             W   E          + R       +      ++    I  D+     ++ + +    
Sbjct: 4   SRWQMAEEPATDLNARQITRVLADDWRVTSYSGLQQHGQSIAQDLMPKLDIDAAGVGDVL 63

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                +     +  + G  +H L + +    +   + +++      +  + A     L  
Sbjct: 64  AEPTLTPHQFPRGASPGTFLHSLFEEL-DFTQPVSEEWVSKML--QSGGYDAHWQPVLTG 120

Query: 827 SITRLLENPM------MTTAMSCDSYSEV----SVSGKINCPKKDIIIS----------- 865
            I  +L+ P+      ++   + +   E+     V+G +     D +I            
Sbjct: 121 WINAILQAPLTEQGFSLSQLTAKNKQVEMEFYLPVAGPLKAEALDALIRQHDPLSAGCPP 180

Query: 866 -----------GRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIAQLS 905
                      G ID +       ++ +YK++                    + +  Q  
Sbjct: 181 LNFRQVQGMLKGFIDLVFRHDGRYYLLDYKSNWLGENSEAYTQQAMAAAMQMHRYDLQYQ 240

Query: 906 IYEKILKD 913
           +Y   L  
Sbjct: 241 LYTLALHR 248


>gi|270159331|ref|ZP_06187987.1| putative exonuclease [Legionella longbeachae D-4968]
 gi|289165849|ref|YP_003455987.1| hypothetical protein LLO_2529 [Legionella longbeachae NSW150]
 gi|269987670|gb|EEZ93925.1| putative exonuclease [Legionella longbeachae D-4968]
 gi|288859022|emb|CBJ12950.1| hypothetical protein LLO_2529 [Legionella longbeachae NSW150]
          Length = 861

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 59/551 (10%), Positives = 145/551 (26%), Gaps = 82/551 (14%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +    L+D   +   +                 +L+SP   +S+++         E 
Sbjct: 284 FNISLGQPLSDFPLVAHALCWLNLDDFTLSQHQASLLLQSPYLGYSKEEFIGRAEYLQEG 343

Query: 464 ETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
             +  +           +    K   ++  +     +A        F   L        +
Sbjct: 344 ILLERHVIPLKDFINELHYYTPKLSQLLSLLIAYPAMATPQEWVCLFQDRLRVMGFPGDY 403

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQ----NSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
                +E    L+ F+       Q    N+  +  E +                N+  ++
Sbjct: 404 --GLNSENYQCLNRFITLFDEFRQLAVFNTNLTKAEALEAFHHLTHHTIFQAQKNNAPIQ 461

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +  +  A G E   ++++    Q   +K      +          P ++ +  S  + + 
Sbjct: 462 VTGLLEASGCEFDSLWVMGLTDQCLPNKVRLSAFV----------PSYLQRELSMPHSLP 511

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
           +      +   +   RL     +      ++        +  +   +            E
Sbjct: 512 ERELQFARQILQ---RLQKSADS------VVFSFPQLQGDNPNLPCSLITTFPHFTLLPE 562

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
               I     I  +E  +           P ER      ++  Q                
Sbjct: 563 PNSSIYQPKYITVEEHFSLPV-------LPEERITGGTAILSNQAKC------------- 602

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTF---NRGLIIHKLLQVI--FTLPEHKRKNFITSY 808
                P     + +   ++ L          RG +IHK+++++      + K K      
Sbjct: 603 -----PFKAFAEHRLRAKAPLQTTDGLNHQERGKLIHKVMELLWQALESQEKLKLLAPHI 657

Query: 809 CTKNAKLWPAKEYKNLLLSITRL------LENPMMTTAMSCDSYSE--------VSVSGK 854
             +           +L   I  L      +E+  +   +      E         ++   
Sbjct: 658 VDRYIDEAIHTALSHLNQRINSLSASLQEVESARLKRLIYTYLEWEKQRAPFTIAALEHS 717

Query: 855 INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            +     + I  RID++       ++ +YK+     +           QL +Y  +    
Sbjct: 718 YSINLAGLDIQVRIDRLDQVADKKWVIDYKSTLPTSKPWHEERPK-EPQLLLYALL---- 772

Query: 915 YPNKSLVCLLI 925
             +  +   L+
Sbjct: 773 --DDQINTFLL 781


>gi|302874682|ref|YP_003843315.1| ATP-dependent nuclease subunit B [Clostridium cellulovorans 743B]
 gi|307690705|ref|ZP_07633151.1| ATP-dependent helicase/deoxyribonuclease subunit B [Clostridium
            cellulovorans 743B]
 gi|302577539|gb|ADL51551.1| ATP-dependent nuclease subunit B [Clostridium cellulovorans 743B]
          Length = 1152

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 113/1031 (10%), Positives = 256/1031 (24%), Gaps = 224/1031 (21%)

Query: 51   QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
              +   S+    +   S+L    L +     K   T    K    +   +      +   
Sbjct: 75   DQVGGVSKKHLDDAGRSMLLYKILEENKKELKYFSTISNQKGFVSILGDIVSELKNYDIT 134

Query: 111  RDRFNTYKM-FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
             +         +           ++  YE+ +          +     DL    D  + +
Sbjct: 135  TETLKELYSKIEDNKGLKDKLYDISLIYEKLRAA--------MEEKYLDL---EDELSIL 183

Query: 170  RYKIDQEIN----HILIDEVQDTSLIQWEVIR--SLTEDFFVGKNTHSSPRTLFAVGDEK 223
              K+D+  +    ++  DE    + +Q+ +I    L          HS            
Sbjct: 184  YGKLDEYRDINNAYVYFDEFSSFTTLQYNIIEKILLKAKVLSISLIHS-----------S 232

Query: 224  QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
            Q I S           +                 I                +K+  I   
Sbjct: 233  QYIKS-------NSDGKIESYSNEGDVFSVTSKTI----------------NKLIDIARK 269

Query: 284  -AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                L        + +     ++  ++         + +   ++ +     +S  +    
Sbjct: 270  INSPLEYKEIEYKKIKRFNNQELIHLEKNLYAYPHEEYEEKTKKINININVNSFNEIEE- 328

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                  +A  I   +           R  + +DI V+ R          + + + N+Y I
Sbjct: 329  ------VAKGILEAVRD---------RDFRYRDIAVVTRN---LDSYDEMIKAIFNEYNI 370

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRH 461
                + +  +  +  I  L +    I     + +    LKS L + S + +  +      
Sbjct: 371  PYFIDKKKEIESNKLIVFLKSALEIISKNWSEEAVFKYLKSDLTSLSREQVDLLENYALA 430

Query: 462  ETETVYEYIQKFANCG---------------------------------------ISKFQ 482
                      K                                             +K +
Sbjct: 431  NGIRGKRKWTKETWDYDFPKELSGGKEKEEILEEINELKAQVVNPLLKLYDISISKAKVK 490

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILG--AKKGRQQFISRFGNEVI---DVLDEFLNFTL 537
             + K I + +         +     +     +G+Q   + +        + LD  +    
Sbjct: 491  EISKIIFQFLQQV---GAFEKIENWIQGFRTEGKQLLANEYSQIWNLIIETLDMLVEVLG 547

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              E     SL+E    L       K        ++V + +V  +K     +++++     
Sbjct: 548  DAE----MSLEEYEKILSIGFEENKMGLIPATIDQVLVGSVERSKTNGVKILYIIGVNDG 603

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            VF     + +     LND+    +        +   +            E   L+Y   T
Sbjct: 604  VFP----RSVSDEGILNDEDRTVLMENGITLASTTRAAA---------FEEQFLVYETFT 650

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
             ASD++II         K          + + F        I    S+ K       ++ 
Sbjct: 651  AASDEIIISYPIADFEGKALRPSILVSRLKNIFKKITIKSDILDVVSMEKVTLPMPTFNQ 710

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI-------------------- 756
                         I +   E           K   +                        
Sbjct: 711  MISAIRAKMEGAEISEYWSEVYKWYHDQEEYKLLKDRIMRGFYYSNQGVIKNKEKIKKLY 770

Query: 757  ---LNPSTIDTKGKTNLESLLS-DNQTFNR----------GLIIHKLLQVIFTLPEHKRK 802
                + S  +T         ++   +   R          G  +H +++    +   K  
Sbjct: 771  GEDYSVSRFETYVNCPFSYFVNYGLKAKERKLYNLTTLDKGTFLHNVIENFC-ISVIKEH 829

Query: 803  NFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAM-----------SC 843
                +      + +  K  K  L     +L +          +   +           + 
Sbjct: 830  ASFENIDEDFCQQFSDKVLKETLKIDNSVLNSSNRYQYMANRLKKVLVRTLITITRQINN 889

Query: 844  DSYSEVSVSGKINC------------PKKDIIISGRIDQISI--SQQNIF--IFEYKTHH 887
              +  +S   + +                   I G+ID+I I      ++  I +YK+  
Sbjct: 890  SDFKPISFEAEFDDNREFRPIEISLKDGTKAKIKGKIDRIDILKKDDELYIRIIDYKSSS 949

Query: 888  HVPQEIEHIPYTH---IAQLSIYEKIL-----KDSYPNKSLVCLLIYVSEPKVF----II 935
                    +   +     QL +Y   +     ++ +       +  Y  E  +      +
Sbjct: 950  KTIN----LKDVYYGAQLQLLVYLDAILSYEEEEKHEKSMPGAIFYYKIENPIVSKKQKL 1005

Query: 936  PQNKLNKAFAE 946
               ++ +A  E
Sbjct: 1006 SDEEIEEAITE 1016


>gi|289432505|ref|YP_003462378.1| hypothetical protein DehalGT_0555 [Dehalococcoides sp. GT]
 gi|288946225|gb|ADC73922.1| conserved hypothetical protein [Dehalococcoides sp. GT]
          Length = 379

 Score = 78.4 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 66/203 (32%), Gaps = 31/203 (15%)

Query: 755 YILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFTL---PEHKRKN 803
             L+ S ID      L+     +          F+ G  +H   +  F +   P    + 
Sbjct: 2   RPLSYSQIDQYQSCPLKYRFLYSDGLKPLEKGYFSFGTTLHDCAEHFFRVKVPPPLSLEK 61

Query: 804 FITSYCTK-----NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
            +  Y +         +   + Y+ L   I               D +  ++V  +    
Sbjct: 62  LMEYYQSHWRSGGYESVEIEENYRQLGREILA-----EFHRIHRADFHMPLAVEHQYTVN 116

Query: 859 KKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI---AQLSIYEKILKDS 914
              + ++G+ID++       + I +YK++       +     ++    QLS+Y+  ++  
Sbjct: 117 LDGVKLTGKIDRVDKLPSGELCIVDYKSNK------DLFSAEYVQDNLQLSLYQLAVEQI 170

Query: 915 YPNKSLVCLLIYVSEPKVFIIPQ 937
           +        L ++    V   P 
Sbjct: 171 WYLPVGELCLYHLRSNTVMRCPA 193


>gi|320531922|ref|ZP_08032830.1| hypothetical protein HMPREF9057_00697 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135864|gb|EFW27904.1| hypothetical protein HMPREF9057_00697 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 447

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 95/354 (26%), Gaps = 77/354 (21%)

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK-------K 697
            +  R+L + ++RA+ +L++   ++  +               +  + +           
Sbjct: 1   ADERRMLIMALSRATRRLLLTATADAEHAPSPFLTEIAHRAGIALTDADGAPLLSPDTGD 60

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETI--------------KQLMDEQKIPKKL 743
           + L   + +    A   +     +T   R                               
Sbjct: 61  LTLRGLVGELRHAAICGNLETATDTERRRGRVAVDLLADLARQGVSGADPATWIGAAGPT 120

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-------QTFNRGLIIHKLLQVIFT- 795
                    E   ++PS ++      L+  L+ N            G ++H++ +   + 
Sbjct: 121 SHTPLVAQGERIRVSPSDVEGLAACPLKWFLTRNGGSAPASDAQALGSLVHEIAERAESE 180

Query: 796 --LPEHKRKNFITSYCTKNA-----KLWPAKEYKNLLLSITRLLENPMMT---------- 838
                  R+ F                  A   + ++  +   L +              
Sbjct: 181 HLRGPALREAFEERLTDLGYPATWQGGLAADRARAMIERLDAYLSDCDALGIRADVERPV 240

Query: 839 --------TAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQ------------- 876
                     +S +      +   +  P    + ISGRID++                  
Sbjct: 241 RSDVDIPLRVLSPEVRERAGLRMPMEGPDAVPVRISGRIDRLERLGGSPGDDPDDTAGIG 300

Query: 877 ---NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
               + I + KT   VPQ+++  P     QL+ Y   L        +   L+ +
Sbjct: 301 RNGTVRIIDLKTGQRVPQDVQRHP-----QLATYRLALSAQ-GLDVVGGALVLL 348


>gi|108762893|ref|YP_630835.1| hypothetical protein MXAN_2616 [Myxococcus xanthus DK 1622]
 gi|108466773|gb|ABF91958.1| hypothetical protein MXAN_2616 [Myxococcus xanthus DK 1622]
          Length = 1079

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/494 (8%), Positives = 115/494 (23%), Gaps = 95/494 (19%)

Query: 550  LISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                L +                V ++ V    G     +FL       F  +       
Sbjct: 532  FGRWLRDAMADAHLPPRGPRGAAVEVLDVAELPGRSFQDLFLAGLTEGRFPGRDAPS--- 588

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             P L D     +     +    +              E   L    +  A   + +    
Sbjct: 589  -PLLADAERAALNKHLGRDVFRLTGGEFDERAAWRLTEDRLLFASALAAAEANVSLSFAV 647

Query: 669  NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN------- 721
             ++  ++     + + V          + +     +++    +        E        
Sbjct: 648  ESAGGQEQVPSAFLEEVRRLTALKWEPRSLSPIPPLDEVLTESELRRCVALEALSQPKLR 707

Query: 722  --TPLEREETIKQLMDEQKIPKKLFSPIKNDINE-------------------------- 753
               P      +++    +          + ++                            
Sbjct: 708  VTEPDAAAAVLRRRFAPEAWYAGARELSEVEMERLFFFGDPKVQPGPYSGSVDLDTQRES 767

Query: 754  ---------PYILNPSTIDTKGKTNLES-------------LLSDNQTFNRGLIIHKLLQ 791
                        L+ S +   G    +                 +     RG   HK+++
Sbjct: 768  LRETFRFDITRPLSASALARFGNCGFQGFLSYGLKVAEPDVPGEEFDARGRGTFWHKVVE 827

Query: 792  ----------VIFTLPEHKRKNFITSYCTKNAKL-----------WPAKEYKNLLLSITR 830
                      ++   PE      + +      K                 ++       R
Sbjct: 828  EVFAALKEKQLLGKAPEEVPDEVLDAALKAAIKDFERVHHVGHPELWKLAHERARAMARR 887

Query: 831  LLENPM------------MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI 878
            +L +                      +  +   +  ++  ++ +   G ID++  S   +
Sbjct: 888  ILVDERRGLPFDTMTPENFEFRFGPAARDDKWSNVVLHAGEEPVYFEGTIDRLDKSGGEV 947

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
             + +YK+     + ++    T   QL +Y    ++S   ++       +       + + 
Sbjct: 948  GVIDYKSGRLDKRSLKERLLTSDFQLPLYLYAARESGHTEARQAAWFSLRTGMAIRLSEV 1007

Query: 939  KLNKAFAEISTKIP 952
              +    E+ +K P
Sbjct: 1008 ISDAELDELLSKDP 1021


>gi|41407941|ref|NP_960777.1| hypothetical protein MAP1843 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396295|gb|AAS04160.1| hypothetical protein MAP_1843 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 301

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 64/228 (28%), Gaps = 26/228 (11%)

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
             +       P    S      +         +  + +       + +    RG ++H  
Sbjct: 4   QPEARQSAARPAGQVSRPALSPSRAADFKQCPLLYRFRAIDRLPEAPSPAQLRGSLVHAA 63

Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT------------------RL 831
           LQ ++ LP  +R           A          L   +                     
Sbjct: 64  LQQLYELPAAQRGPETALALVDPAWEQLLAATPELTADLDPTQHGQLLAEAQALLAGYYR 123

Query: 832 LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVP 890
           LE+P            E  V  ++       ++ G ID+I ++    + + +YKT    P
Sbjct: 124 LEDPT---RFDPQC-CEERVEVELA---DGTLLRGFIDRIDVAATGELRVVDYKTGKAPP 176

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                  +  + Q+  Y   L  S         LIY+++ +V      
Sbjct: 177 AARALAEFKAMFQMKFYAVALLRSRGVPPTRLRLIYLADGQVLDYSPE 224


>gi|148378429|ref|YP_001252970.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC
           3502]
 gi|251764548|sp|A5HYX0|ADDB_CLOBH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|148287913|emb|CAL81979.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC
           3502]
          Length = 1150

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 70/680 (10%), Positives = 184/680 (27%), Gaps = 140/680 (20%)

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + KDI V+     D      +   +   Y I    + +  + ++  I  +++    +
Sbjct: 334 KGCRFKDIAVIT---GDLEGYENIISSVFLQYNIPFFIDKKREINNNPIIVLILSALEVL 390

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANCGISKF---- 481
                  S    LK+ L + + ++   +             +   + + +   S +    
Sbjct: 391 SKNWTYESVFRYLKTGLLDINNEEMDILENYVLANGIKGYQWTNDKPWEHKFFSNYELED 450

Query: 482 ---QHVIKYIHELIHIA----------------------------QFCSPHDFFTLILGA 510
              + ++  I+++ + A                               +  D    ++  
Sbjct: 451 QVEKELLAKINDIRYKAMEPIVTLNKNFKSIDKAKEFCEVLYEFLCNINLPDKIQNMIED 510

Query: 511 KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
            K   +   +   N++ +++ E L+  +        SL+E    L+      +       
Sbjct: 511 FKVEGEIEKASEYNQIWNIVMEVLDQIVEVIGEEKISLKEFFKILQTGLSEYEIGLIPPT 570

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            ++V + ++   +      +++V     +F                + GI     +    
Sbjct: 571 LDQVMVGSITRLRSHNINTLYIVGVNDGIFPSP-----------LKEEGILSDDDRKFLG 619

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           +  +         +   E   L+Y  +T  S  L +         K          +   
Sbjct: 620 DKGLEIAKDTKSIA--FEEQFLVYSTLTTPSKYLRLSYPIADGEGKTLRPSIIISRIKKI 677

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--EQKIPKKLFSP 746
           F N      I   N   ++                  R++     +D       K     
Sbjct: 678 FTNICEENDIVKLNGEEEELKNISSAKPTFNYLISNLRKDVEGAKIDNIWGDTYKWYLEN 737

Query: 747 ---------------------------IKNDINEPYILNPSTIDTKGKTNLESLLS-DNQ 778
                                      I+N   +P  ++ S ++   +      +    +
Sbjct: 738 EFWIEKLNRLIKGFDYTNQSKYIETKKIRNLYGKPLKISVSRVEKFSQCPFAYFVQYGLK 797

Query: 779 TFNR----------GLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKN-- 823
             +R          G+ +H +L+      E    +      ++  +       +E  N  
Sbjct: 798 AKDRKIFNLSYPDLGIFMHSILEKFSHELEKQGLEWDTMDLNWAEEEIDKLINEELDNKS 857

Query: 824 ------------LLLSITRLLENPMMTTAMSCDSYS----EVSVSGKINCPKK------- 860
                       +  S+ ++L+  +    +                  +           
Sbjct: 858 LDILNSSKRYEYVTKSVKKILKRSI--WLIGEHIKRGNFKPSYYELSFDIDGDYPPIAME 915

Query: 861 ---DIIIS--GRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI- 910
                +++  GR+D++         +  I +YK+      ++  + Y    QL IY    
Sbjct: 916 LHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGA-KEFKLSDVYYGLQLQLLIYLDAI 974

Query: 911 LKDSYPNKSLV---CLLIYV 927
           L +      +      L+Y+
Sbjct: 975 LTELAERSGINGEPGALLYL 994


>gi|160888200|ref|ZP_02069203.1| hypothetical protein BACUNI_00608 [Bacteroides uniformis ATCC 8492]
 gi|156862335|gb|EDO55766.1| hypothetical protein BACUNI_00608 [Bacteroides uniformis ATCC 8492]
          Length = 589

 Score = 78.4 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 76/546 (13%), Positives = 140/546 (25%), Gaps = 142/546 (26%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y +  K+N  +DFE ++  +  LL+       I   +      +L+DE QDT  +Q
Sbjct: 167 IIKSYFQNLKENKEIDFELILYYSYLLLRDN---KGICKTLSHIFPFVLVDEYQDTKELQ 223

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + ++ ++ +               F VGD  QSI+S  G  P   +  ++         G
Sbjct: 224 YMILGAILK--------IGKNNKAFIVGDPNQSIFSNLGGFPMTKVDLEKT-------TG 268

Query: 253 QKFSIIELPLSFRSTADILTVVDKV--FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             F+ + L  ++RS++ +++  D    +     A G  +D  + IR+             
Sbjct: 269 LHFNELSLTKNYRSSSLLVSYFDYFKTYDNTIEAVGKYKDYQSIIRYN------------ 316

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
                         +  S     D              I   I   I             
Sbjct: 317 --------------KIVSINDLEDE-------------IIRIIQFNIDE---------CG 340

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI-- 428
           I   +I VL         +T         Y                       L R I  
Sbjct: 341 ISPNEICVLAPWWIHLSGLTRNLMARLPQYS---FDGPGMAPFARDIDNFWYKLSRIILT 397

Query: 429 -LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
             +    +  +        +     I +  + +                     +   ++
Sbjct: 398 DATPSLYIRRLRWANEIKTDLISIGIDRNLSAKKILYICNSISVNEQEGLEYLRKFFFQF 457

Query: 488 IHELIHIAQFCSPHDF-FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
           + EL       +  +  +     +   R + + + G+E I  +D F     +        
Sbjct: 458 LRELDVDLHQYNYLELHYNAFFDSSAKRIEKLRKDGSEFISHVDTFRKVFRQ-------- 509

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                                    + I T H  KG E   V           H      
Sbjct: 510 ----------------------KEGITISTNHGVKGAEFDTVIAFGLLEDYVPHFSDVN- 546

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                                                 E   R+LYV  +RA   L +  
Sbjct: 547 ------------------------------------KIENAKRILYVIASRARKNLYLIS 570

Query: 667 HSNTSN 672
             +   
Sbjct: 571 EQDRGK 576


>gi|319779422|ref|YP_004130335.1| DNA helicase IV [Taylorella equigenitalis MCE9]
 gi|317109446|gb|ADU92192.1| DNA helicase IV [Taylorella equigenitalis MCE9]
          Length = 619

 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 24/165 (14%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           AK +   Y E       +D++ +I+ +   + +         K       IL+DE QD S
Sbjct: 313 AKEILHKYNEDLTYAQEIDYDRMIVKSTQYVAE--------KKFTHNWKCILVDEFQDIS 364

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             ++E+++ L +          +   LF VGD+ Q+IY F G+E K          +   
Sbjct: 365 KSRFELLQELVK--------QETDIGLFCVGDDWQTIYQFAGSELK--------YIRNLD 408

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
              Q   II L  +FR    + ++  K      N    S  S   
Sbjct: 409 QYVQDLEIIPLDRTFRFHNALASISSKFVQKNPNQYKKSIKSLRE 453



 Score = 41.1 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 25/124 (20%)

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L     +L           S N+ E++  T+H +KG E+  V +++  S        K+ 
Sbjct: 488 LSRFNYQLPLPTKIDYLNSSFNNLEIKASTIHKSKGREADFVIILNVESGEMGLPSEKES 547

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            I                         +L    +     +  R+ YV +TRA + + I  
Sbjct: 548 EI-------------------------ELYASEENFPHAQERRVFYVALTRAREHVFIYY 582

Query: 667 HSNT 670
               
Sbjct: 583 SKEK 586


>gi|292654592|ref|YP_003534489.1| repair helicase [Haloferax volcanii DS2]
 gi|291372778|gb|ADE05005.1| repair helicase [Haloferax volcanii DS2]
          Length = 616

 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 71/198 (35%), Gaps = 35/198 (17%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +   K ++ ++ F D++                   +   +++++IDE QD + +Q+
Sbjct: 191 IRAWRAYKGEHGLVGFADMLERVKQ------------RALVPNVDYLVIDEFQDITTLQY 238

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           +V                  R +   GD+ Q +Y++ GA+P  +L  +R N +       
Sbjct: 239 DVYEEW----------KPHMRGVLIAGDDDQVVYAWQGADPNLLLDAERDNDE------- 281

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                 LP S+R  +++L VV++     +  Q              + +     ++L   
Sbjct: 282 -----ILPNSYRLPSNVLNVVNREIRHIDKRQEKDLKPRKEGGAVEA-VESPSMLELARN 335

Query: 314 VVSQHDSQCNPQQESWTS 331
           V    +         + +
Sbjct: 336 VRYTVEKDEGTVMVLFRA 353



 Score = 39.1 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 16/144 (11%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLV-DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
              + + VR+ T+H+AKG E+  VF+  D   +V                          
Sbjct: 488 EEMDPSRVRVGTIHSAKGREADHVFMATDLTEKVVEQMAASVSDEELEARGIEEFTATTS 547

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                                +   R+ YVGM+RA ++LI+ ++  T           ++
Sbjct: 548 PVPLIT---------------DNERRVFYVGMSRARERLIVLENLVTGAPTLPISVLLHN 592

Query: 684 MVYDSFHNDERVKKIKLTNSINKD 707
            + +           +L     + 
Sbjct: 593 EIREEPAQGLVDDAQELPAPEPEA 616


>gi|213400867|gb|ACJ47082.1| hypothetical protein [Wolbachia endosymbiont of Nasonia
           vitripennis]
          Length = 157

 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 9/152 (5%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++    +    G+ +   +L  SFRST ++L +VD++F+             
Sbjct: 1   NPHLFNYMQQYFHTKTG--GRDWISCQLEKSFRSTPEVLMLVDRIFNNFRAEISFV---D 55

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             I+H   R    G +++W  +    + +    Q              +  +LA+ IA+ 
Sbjct: 56  NEIKHVPHRENDQGYIEIWPALPKCKEEEQQALQIPL---ICKEGYTIADRLLAQAIAHK 112

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           I N +    I    K R I+ +DI+VLVR+R 
Sbjct: 113 IHNWLNEGRIL-VAKDRHIEPRDIMVLVRQRN 143


>gi|110635906|ref|YP_676114.1| DNA helicase/exodeoxyribonuclease V, subunit B [Mesorhizobium sp.
           BNC1]
 gi|110286890|gb|ABG64949.1| DNA helicase/exodeoxyribonuclease V, subunit B [Chelativorans sp.
           BNC1]
          Length = 1042

 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 56/542 (10%), Positives = 127/542 (23%), Gaps = 52/542 (9%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +          + I    +   +L D +    L  +   I   ++ +  V +LK PL 
Sbjct: 394 RTLARRVAAELKRFGIRADDSGGSLLADSVPATLLRLMLEAICRPKEPVVIVGLLKHPLL 453

Query: 447 NFS--------EDDIFKICTQRHETE-------TVYEYIQKFANCGISKFQHVIKYIHEL 491
                        ++ ++   R  T        +     +  A     +    +  +   
Sbjct: 454 RLGLPRERVRRAAEVIELMALRGGTGRPDVATLSSLFAQRHDAMMRDPRKPFWLSRLSAS 513

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR--------NEQNS 543
                          I+     R+             ++ F                  +
Sbjct: 514 DIAEARQVLAALEQAIVPLSSLREAAAVGLSLLARASVEAFEALARDEDGTLNELYRGEA 573

Query: 544 YSSLQELISELEQYPPTIKRAHSANHN---EVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
             +L   + +L +     K   S   +    +    V          + +          
Sbjct: 574 GEALARFLRDLVECRTGTKAEISEWPDVFAALMAGEVVKPAMGADQRIAIWGALEARLQS 633

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                M ++  LN+                +  +L     +           +       
Sbjct: 634 ---VDMLVLGGLNEGTWPEAPRSDRFMSRLMKGELKLEPPERRIGLAAHDFMMAFGAPQ- 689

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             ++   S  S    +    W   +       E                           
Sbjct: 690 --VVLARSTRSESAPAVASRWLQRLAACAGPSETAAMRARGQRFIAWAHALEARDDVPFA 747

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             P  R     +         +        +    IL            L+ L+ D    
Sbjct: 748 PRPCPRPPLEARPKRFSVTEIETLRRDPYAVYARRIL--------KLMPLDPLIRDPGAA 799

Query: 781 NRGLIIHKLLQV-IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR--------- 830
            RG + H +LQ  I +  +    + +        KL+   +    + ++           
Sbjct: 800 ERGTLFHDILQAFIQSGADPSAPDALERLLDAGKKLFAETKLPVDVEAVWWPRFERTAYG 859

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHV 889
           ++             ++E+  S  I       ++SGR D+I   +  +  I +YKT    
Sbjct: 860 IIGWERGRAEAVAARHAEIRASA-IEVGATGKLLSGRADRIDIRADGSAEIIDYKTGSTP 918

Query: 890 PQ 891
            +
Sbjct: 919 SK 920


>gi|115378638|ref|ZP_01465789.1| hypothetical protein STIAU_4711 [Stigmatella aurantiaca DW4/3-1]
 gi|115364350|gb|EAU63434.1| hypothetical protein STIAU_4711 [Stigmatella aurantiaca DW4/3-1]
          Length = 760

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/566 (8%), Positives = 127/566 (22%), Gaps = 96/566 (16%)

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTL 537
                  + + +L  +             LG    + +       + +   + E      
Sbjct: 141 ELLGAWWQAVRQLGLMDSEGELEPLRDGALGLLGLKARARDDAARQALGLRVAELERGLR 200

Query: 538 RNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           R E     S +     L +            +   V ++ +    G     +FL      
Sbjct: 201 RVEGGPRLSRRTFGRWLVDAMRDVSLPPGGPSSGAVEVLDIRELAGRTFGHLFLAGMTEG 260

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F           P L D   + +     +    +     +        E   L    + 
Sbjct: 261 RFPGHEAPN----PLLGDADRVELNKHLERDVFRLTGGEFEERAPWRLTEDRLLFASVLV 316

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            A +Q+ +         ++     + + V      +   + +     ++           
Sbjct: 317 AAEEQVSLSFAVAGVGGQEQVPSAFLEEVRRLTGRNWEARALMAVPPLDDVLTEPELRQR 376

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI------------------------- 751
              E     R    +  M E  + +                                   
Sbjct: 377 VALETMASARLRVTEPDMAEPLLRRHFAGEAWYAEARELARVELERLHFFSDPAHRVGPH 436

Query: 752 -------------------NEPYILNPSTIDTKGKTNL-------------ESLLSDNQT 779
                              +E   L+ S +   G                 E    +   
Sbjct: 437 TGHVVGPGLPEALRETFRFDETRPLSASALARFGNCGFQGFLTYGLKVAEPEQPGEEFDA 496

Query: 780 FNRGLIIHKLLQV--------------IFTLPEHKRKNF-------ITSYCTKNAKLWPA 818
             RG   H++++               +  +PE                           
Sbjct: 497 RGRGTFWHRVVEEVFRRLREKGLLGKGLEEIPEEVLTAAVAEAVRSFEQRHHVGHPELWK 556

Query: 819 KEYKNLLLSITRLLENPM------------MTTAMSCDSYSEVSVSGKINCPKKDIIISG 866
              +       R+L +                     ++  +      +   ++ I   G
Sbjct: 557 LAKERARAMARRILADERRGLPFERYMPEDFELKFGPEALRDTWKQVSLAAGQEAIHFEG 616

Query: 867 RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
           +ID++     ++ + +YK+     +E++    +   QL +Y    + S   ++       
Sbjct: 617 KIDRLDQRAGDVGVIDYKSGRLDKRELKEKLLSSDFQLPLYLYAARASGHREARNAAWFS 676

Query: 927 VSEPKVFIIPQNKLNKAFAEISTKIP 952
           +       + +    +   ++    P
Sbjct: 677 LRTGTTLHLSELLSPEEIDDMLATEP 702


>gi|312621143|ref|YP_004022756.1| lexa repressor [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201610|gb|ADQ44937.1| LexA repressor [Caldicellulosiruptor kronotskyensis 2002]
          Length = 819

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 123/410 (30%), Gaps = 71/410 (17%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y    K+N ++DF+D+ +   D LK  +           +  HI+IDE QD + +
Sbjct: 202 ELMQLYTSLLKENKLVDFKDMALIVLDYLKTNEHKIT-------KYTHIIIDESQDLTKV 254

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q E+++ L        +       +  + D  QSIY+             R     +   
Sbjct: 255 QLEILKLLYNSEKSYSS-------IMFIADTAQSIYT--------HSWLVRGRSFASIGF 299

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  ++R+T  I  +   +                                  
Sbjct: 300 DMTGKSYTLSKNYRTTVQIANLAYSLIEKTPE---------------------------- 331

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
              + ++++   P           L    +    A  +   I+N +  +           
Sbjct: 332 ---IIENENFVKPALIDKQGPLPVLKIFQTEEQEAEFVCNEIANKLACE----------F 378

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           Q KDI V+ + R+                 I +  +      +       M   + +  +
Sbjct: 379 QLKDIAVICKNRRYLESFYNYASSKGIKA-IFLNSDSGENFEEEGIRLITMHSIKGLEFK 437

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY---EYIQKFANCGISKFQHVIKYI 488
              +  +     P  +  ++++ K+     +           ++   C   K    +  +
Sbjct: 438 VVFIIGLNSNIIPYSSCEDNEVAKLQETTDKKLFYVGMTRANERLYLCCSRKPSKFLSEL 497

Query: 489 H-ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLN 534
           + +L+ I   CS   F+ L +   +   +    +  E      +++E + 
Sbjct: 498 NTKLLRIDSKCSLRSFYKLRIDDYRYINKIRDIYCKEEEVRQWLINELIE 547


>gi|150398435|ref|YP_001328902.1| double-strand break repair protein AddB [Sinorhizobium medicae
           WSM419]
 gi|150029950|gb|ABR62067.1| Double-strand break repair protein AddB [Sinorhizobium medicae
           WSM419]
          Length = 1059

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/463 (9%), Positives = 111/463 (23%), Gaps = 53/463 (11%)

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
               +  + +   +R  T          A+  I + +  +  + +               
Sbjct: 517 IGLDDIALARALARRIATAVEPLASTLSADAEIGRHRSTVLSLSDWAERTGR----ALEA 572

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRA 564
           + +  +       +    E  + L   L   +  +    S   +    LE        + 
Sbjct: 573 VAVDERGSLGDLWAS---EAGETLSTLLRGIMETDGQMESDGAQWCDILEALAASEAVKP 629

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            S  H  V I     ++     +V L       +  +      +  ++    G+     +
Sbjct: 630 RSMRHPRVFIFGALESRLQSVDLVVLGGMNEGTWPRQTSNDPFLSRTMKAGIGLEPPERR 689

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                +         K        R        +     +         K+        +
Sbjct: 690 IGQLAHDFQMACGTRKL-IFSRSMRQGSAPTVASRWLQRLQALGGERLTKQLRANGANYL 748

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +    +                     E         P    E   +     +I +   
Sbjct: 749 HWMRILDYG-------------------ERQPLSERPEPKPPAELQPRKYSFSEITRLRR 789

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT--LPEHKRK 802
            P          L P          ++    D     RG + H++++           R+
Sbjct: 790 DPYAVYARRILRLEP----------IDPFNRDPGAAERGQLYHRIVERFVKGGFDPASRE 839

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITR---------LLENPMMTTAMSCDSYSEVSVSG 853
               +      + +  ++    + +I R          L            S++EV  + 
Sbjct: 840 GE-EAMIRLTDEAFDEEKLPAHIDTIWRPRFQAVGRAFLGWERERRRGVSRSFTEVPAAM 898

Query: 854 KINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEH 895
            +      I ++G  D++   +   I I +YKT      +   
Sbjct: 899 DLGTAD--IRLTGIADRLDRLTDGTIDIIDYKTGSSPSPKEAR 939


>gi|254486211|ref|ZP_05099416.1| double-strand break repair protein AddB [Roseobacter sp. GAI101]
 gi|214043080|gb|EEB83718.1| double-strand break repair protein AddB [Roseobacter sp. GAI101]
          Length = 987

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/370 (11%), Positives = 99/370 (26%), Gaps = 37/370 (10%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   R   A H +V I     A+   + ++ +       +         +   +  
Sbjct: 552 ALLQQGEIRDSDAPHPDVMIWGTMEARVQGADLIIMGGLNDSTWPEAPPPDPWLNRQMRL 611

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G+ +   +     +     I   +            V +TRA           +   +
Sbjct: 612 QAGLLLPERRIGLSAHDYQQSIAAPE------------VCLTRAIR---------SDEAE 650

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
               R    +        E+         I + +    +       +          +  
Sbjct: 651 TVPSRWLNRLGNLLNGLPEQGGDAAWQTMIKRGDHWLEQARALEAVSRVDPAIRPSPRPP 710

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
              +      + IK  I +PY +      +     L  L+       RG+I+H++++   
Sbjct: 711 RGARPHALSVTEIKRLIRDPYAVYAKH--SLKLRALNPLVQSPDAPVRGIIVHEIMERFI 768

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS------E 848
                  KN   S+  + A      E       I  L +   +      +          
Sbjct: 769 KSVTADPKNLTKSHLLETASTVLDAEAPWPAARIMWLTKIERIADWFIENEVRRQSYSSP 828

Query: 849 VSVSGKIN----CPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            +           P     ++G  D+I  +    I I++YKT     +  +        Q
Sbjct: 829 AAFEKAAKGSHIFPDLGFTLTGYADRIDRTDDGDILIYDYKTGTPPSKLEQKAFDK---Q 885

Query: 904 LSIYEKILKD 913
           L +   ++++
Sbjct: 886 LLLEAAMVEE 895


>gi|15827680|ref|NP_301943.1| hypothetical protein ML1312 [Mycobacterium leprae TN]
 gi|221230157|ref|YP_002503573.1| hypothetical protein MLBr_01312 [Mycobacterium leprae Br4923]
 gi|4200265|emb|CAA22922.1| hypothetical protein MLCB2533.08c [Mycobacterium leprae]
 gi|13093231|emb|CAC31693.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933264|emb|CAR71407.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 294

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 73/215 (33%), Gaps = 34/215 (15%)

Query: 752 NEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR-K 802
           +    L+PS      +  L            + +     G ++H  LQ ++ LP  +R  
Sbjct: 14  SPRLALSPSRAADFKQCPLLYRFRAIDRLPEAPSAAQLLGSVVHTTLQRLYGLPALRRCS 73

Query: 803 NFITSYCT-----------KNAKLWPAKEYKNLLLSITRLL------ENPMMTTAMSCDS 845
           +   S                     AK+   LL     LL      E+P      +  S
Sbjct: 74  DTARSLVESVWNQMIAAERDLDGELDAKQRTQLLDEARTLLSGYYRLEDPT---RFNPQS 130

Query: 846 YSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
             E  V  ++      +++ G ID+I ++    + + +YKT    P       +  + Q+
Sbjct: 131 -CEQRVEVELA---DGLLLRGFIDRIDVAATGELRVVDYKTGKAPPAAQALAEFKAMFQM 186

Query: 905 SIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
             Y   L  S         LIY+++ ++     ++
Sbjct: 187 KFYALTLLHSRGVLPARLRLIYLADSQLLDYAPDR 221


>gi|315586350|gb|ADU40731.1| conserved hypothetical protein [Helicobacter pylori 35A]
          Length = 778

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 47/422 (11%), Positives = 117/422 (27%), Gaps = 73/422 (17%)

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           SL++L+    Q      R   ++  ++R+M     +G++   + +VD             
Sbjct: 378 SLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCD 437

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           + +  +L     +P  + +   + +    L                     + S ++++ 
Sbjct: 438 LFLNSALRKSLNLPTLLDKKNLQKHYYYQLF--------------------KNSKEMVLS 477

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              + +++  +       ++    H +       L  S    ++   E     P++    
Sbjct: 478 YIESETSKVSN------MLLELDLHIEPIKDAYTLFESTPLKDYQEEEIQAAIPKDF--- 528

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
                        +   L    +           S  D                   G +
Sbjct: 529 -------SFSASSLSAFLTCKRRFYYRYIKRFKESPKDESNS-------------AIGSL 568

Query: 786 IHKLLQVIFTLPEH--KRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAM 841
           +H+LL+  +   ++    +  +         + P +    L+    I             
Sbjct: 569 LHELLKEAYEKDKNLYALEERLIQLLETKGNITPKERLDTLIALKKIQAFYVKE--KERF 626

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT--------------H 886
                  + +        + +   G ID+I  +    I + +YK                
Sbjct: 627 HAKIKI-LDLEKSFETTIQGVAFKGHIDRIDKTADNEIILLDYKFKSDLKLDNMSEKQRG 685

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAE 946
              P EI  I   +  Q++IY   LK+      +      + + K+    +  L      
Sbjct: 686 SLSPIEIAQISTDY--QMAIYAFALKNLGYKGPIKAFFYDLRKGKLLEEEEPILQTKMDY 743

Query: 947 IS 948
           + 
Sbjct: 744 LK 745


>gi|228997731|ref|ZP_04157337.1| UvrD/Rep helicase [Bacillus mycoides Rock3-17]
 gi|228762017|gb|EEM10957.1| UvrD/Rep helicase [Bacillus mycoides Rock3-17]
          Length = 698

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 98/272 (36%), Gaps = 49/272 (18%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
           + W      V +I K++ +  E  +  + K+ + L    +         +    F   + 
Sbjct: 329 EAWDKASIAVEEIRKWMQV--EYKHYPLRKRRERLVGRIK-----RWIEIELKKF---EG 378

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
           T +K    + + K++        K   +   +    +  K  +         + L    E
Sbjct: 379 TNEK----KALKKEATKRLNAYMKFWPKMSPLSFYSSMIKQKEILEVLP---EELVQETE 431

Query: 139 EAKKKNCVL--DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           +  +K  V   D   LI   + L            +I Q+ +H++IDE QD S  Q  ++
Sbjct: 432 KNCRKKEVYVEDLAPLIHIHHRLAG---------IEIGQKFHHVVIDEAQDFSPFQIYIL 482

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + +T              +   +GD  Q+IY + G   +     K + Q+          
Sbjct: 483 KEIT-----------MGNSFTILGDLSQAIYDYQG--IEDWNDFKEVFQETGY------- 522

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
             EL  S+RST +I+   ++V    E   GL+
Sbjct: 523 -YELTRSYRSTKEIIEFANEVIKNAEIPVGLA 553


>gi|294676836|ref|YP_003577451.1| hypothetical protein RCAP_rcc01289 [Rhodobacter capsulatus SB 1003]
 gi|294475656|gb|ADE85044.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003]
          Length = 871

 Score = 78.0 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 60/596 (10%), Positives = 148/596 (24%), Gaps = 79/596 (13%)

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A   A T+   +   TI    +  ++  +D                          + 
Sbjct: 215 EEADFAAATVQGWLDRGTIDHAAEVGLLVPEDPA-----------YACALAEAFERVGLP 263

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
           + G     +    A   + AL   +       +   ++ SP        +          
Sbjct: 264 LSGAPVGAILRDPAADLIAALLPVLRGPAPRTALASVVISP--------LMPWPAATGRA 315

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
                  + ++             ++ L        P      +          I+  G+
Sbjct: 316 IARDLIARGYSRLWRELDGAGAALLNALR-------PVASLPALFARLGEIDTLITPPGS 368

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
                    L   L   Q         +  L    P    A       V + T +     
Sbjct: 369 LR-------LQIALLRSQGGERPDWPALLALVAPLPLPGIAAPRTVEGVSVFTENDLPWR 421

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
               + ++    + +            +     G             +            
Sbjct: 422 SVRRLIVLGMQGRSWPRPQPANPFFTETEIALIGT---------ATGLHLPGRARETARR 472

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            E + R L      A   +++    + +  +         +       D     +     
Sbjct: 473 LELFRRQLCAATEAA---VLLAPARDMAGARLPPSTALALIARLLGQTDPAHLVVDPRQL 529

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
               +  A    T        +  E+      +  + + L +       +P   +PS ++
Sbjct: 530 SPSAQPFALTPRTPDAHAGRPDLPESG-----DVTLGRDLLALKGAAGADPPPQSPSQLE 584

Query: 764 TKGKTNLESLLSDNQTFNR------------GLIIHKLLQV-------------IFTLPE 798
           T   + L  LL++    +R            G ++H +L+              +  L E
Sbjct: 585 TLIVSPLAWLLAEIDARDRIWSPETLDVLVLGTVVHGVLERVFPPETPPPAPEDMPRLTE 644

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
                 I    +  A+   A E  +L     R+++       ++      ++    +   
Sbjct: 645 AALAEVIARKASWLAEPAWAAERASLAREALRVVQ--GWARFLTETGAMTLANEISLAGD 702

Query: 859 KKDIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
              ++++GR D +         + ++K      +    +      Q+++Y  +L+ 
Sbjct: 703 HGGLLMAGRADGLLRLPDGRHLVIDHKRG-TSGKRRRRMQLGWDLQVALYRAMLER 757


>gi|254451971|ref|ZP_05065408.1| double-strand break repair protein AddB [Octadecabacter antarcticus
           238]
 gi|198266377|gb|EDY90647.1| double-strand break repair protein AddB [Octadecabacter antarcticus
           238]
          Length = 981

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 69/599 (11%), Positives = 149/599 (24%), Gaps = 55/599 (9%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +    A  IA  +   +      +      +  + +   + +   TP  +       
Sbjct: 323 EAPTPRAQADAIAARLRQAVEDGQTAALISPDRMLTRQVTASLDRWDITPDDSAGLPLQL 382

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC-MLKSPLFNFSEDDIFKI 456
                  + +   +  + L  + L+ L R  LS  D        L++             
Sbjct: 383 TAPG-RFLRHIADLFCEPLDAERLLVLLRHPLSHSDRPDRGAHALRTNALELDLRRNGPP 441

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH-----IAQFCSPHDFFTLILGAK 511
                                      V   +  L       +    + H      L A 
Sbjct: 442 FPTAESLTKWAAATSDRHPEHTDWVAWVGSVLLGLCDTNDKPLIDHLTHHLGIAERLSAG 501

Query: 512 KGR----QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHS 566
                  + +    G E + V+ E    +   +     S +E    +         R   
Sbjct: 502 PYLGGSGELWKKPAGREALRVMSELRAHS---DAGGVMSAREYRRLIGSVLAGGEVRDRD 558

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
             H +V I     A+   + +V L       +         +   L    G+ +   +  
Sbjct: 559 DGHPQVLIWGTLEARVQSADLVILAGLNEGTWPEAPTPDPWLNRPLRMQAGLLLPERRIG 618

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV- 685
              +     +                      + ++++ +   +   +    R    +  
Sbjct: 619 LSAHDYQQAV---------------------CAREVVLSRAVRSDEAETVPSRWINRLTN 657

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                 D+               W+    +   P  T             + +  K   +
Sbjct: 658 LLGGLEDKGGPAYLKAMRERGQHWLTLAANIAAPTVTVDPAPRPSPCPPADARPDKLSVT 717

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
            IK  I +PY +        G   L+SL        RG I+HK+L+           +  
Sbjct: 718 QIKTLIRDPYAIY--ARKILGLNALDSLAHTPDAPLRGTIVHKVLERFVKDKIDPADSGA 775

Query: 806 TSYCTKNAKL------WPAKEYKNLLLSITR----LLENPMMTTAMSCDSYSEVSVSGKI 855
            +     A                    I       L         S +  +E+   G++
Sbjct: 776 RAALLSIASDVLIEHCPWPAVRALWFARIASFTPHFLIEEQKRRVFSANVDTEMR--GEL 833

Query: 856 NCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                   ++G  D+I +       I++YKT        +        QL +   +++ 
Sbjct: 834 KLAYLPFTLTGTADRIDMSDDGEALIYDYKTSKAPTSPQQKYFDK---QLLLEAAMVER 889


>gi|149184292|ref|ZP_01862610.1| helicase [Erythrobacter sp. SD-21]
 gi|148831612|gb|EDL50045.1| helicase [Erythrobacter sp. SD-21]
          Length = 1009

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 59/464 (12%), Positives = 141/464 (30%), Gaps = 57/464 (12%)

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
           + ++ ++  +R E    +   +      + + +   + + +LI         D       
Sbjct: 479 QAEVARLAEKRPEIAEWWALAEAQLAPLVERDRDTPESLADLI---------DTLAASAE 529

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLR--NEQNSYSSLQELISELEQYPPTIKRAHSA 567
           A  G + +    G  +   ++EF         E       + L   +E+           
Sbjct: 530 ALCGEKLWAQEDGRTLAAFVEEFRLHAREAGFETAPRDVAKVLSDAMEERAVRPPY---G 586

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            H  V+++ +  A+   + +V         +  +      + P +    G+P    +   
Sbjct: 587 GHARVQVLGLLEARLNRADLVICAGLNEGSWPARGSIDALLAPPVLRALGVPGGDFRIGL 646

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
             + ++  +   +            V ++R+                 S        +  
Sbjct: 647 SAHDLAGAMGAPE------------VVLSRS-------GRDEGGPAIPSRFLLRVQALLG 687

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                   +              A E+S   P+ +P +R+  I     ++ +        
Sbjct: 688 ELLPRHEERAAIELARAMTRAEPAPEYSRPMPKPSPQQRDVDISATALDRLLGD------ 741

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                             G ++L++L +D     +G I H +L+        +R +    
Sbjct: 742 --------PYQFFAQKIMGLSDLDALDADPNPLWQGNIAHTILERWH---IARRTDPDVR 790

Query: 808 YCTKNAKLWPAKEYKNLLLSIT--RLLE-NPMMTTAMSCDSYSEV-SVSGKINCPKKDII 863
                 ++   +    L+  +   RLL+    +   +   +  EV +V  K +   +D+ 
Sbjct: 791 IAPIMEEVLEEENADPLVRGLWQPRLLKGLEWIEETLGSYTEREVLAVEAKGSMHVEDVF 850

Query: 864 ISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           + GR D+I       + I +YKT          +   +  QL I
Sbjct: 851 VHGRADRIDRLEDGTLAIIDYKTGKPP--TAAQVEQGYALQLGI 892


>gi|86136734|ref|ZP_01055312.1| hypothetical protein MED193_13707 [Roseobacter sp. MED193]
 gi|85826058|gb|EAQ46255.1| hypothetical protein MED193_13707 [Roseobacter sp. MED193]
          Length = 985

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 54/417 (12%), Positives = 116/417 (27%), Gaps = 47/417 (11%)

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLES 585
           + L  F N     E     S ++    L         R     +  + I     A+   +
Sbjct: 523 EALKIFSNLEAEAEHGGEMSARDFADLLSAILSQGEVRDRDTPYGSIMIWGTLEARVQGA 582

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            +V L       +         +   L    G+ +   +     +     +   +     
Sbjct: 583 DLVILGGLNEGSWPEAAKPDPWLNRQLRHQAGLLLPERRIGLSAHDFQQAVAAPE----- 637

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
                  V +TRA+           S+E  +    W + + +              +++ 
Sbjct: 638 -------VWLTRAAR----------SDEADTVASRWLNRLTNLLSGLPDQGGKAALDAMR 680

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPSTIDT 764
                  +W+    + T L               P++L  + I   I +PY +    +  
Sbjct: 681 ARGQEWLDWAEALEQPTELPSAPRPSPRPPVASRPRRLTITEIPRLIRDPYAIYAKHV-- 738

Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQVI--------FTLPEHKRKNFITSYCTKNAKLW 816
                L  L+ +     RG ++H++ +            L          +   +   + 
Sbjct: 739 LRLRPLNPLVQEPDALLRGTVVHEIFEDFIRDSLEDPSRLTADHLIETARALLER--DVP 796

Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK--DIIISGRIDQISIS 874
                   L  I RL  + ++         + + +        +  D  I+ R D+I   
Sbjct: 797 WPVARLLWLSRIQRLAGDFILAEQSRQSRATPLKLEAMGEARLEPLDFTIACRADRIDQD 856

Query: 875 QQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK-----ILKDSYPNKSLVCLLI 925
           ++  + +++YKT        E        QL I          K+  P +      I
Sbjct: 857 ERGFLHLYDYKTGAPPS---EAQQKKFEKQLLIEAAMAEEGAFKEIGPAEVARAAFI 910


>gi|320529154|ref|ZP_08030246.1| putative ATP-dependent nuclease subunit B [Selenomonas artemidis
            F0399]
 gi|320138784|gb|EFW30674.1| putative ATP-dependent nuclease subunit B [Selenomonas artemidis
            F0399]
          Length = 1181

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 81/719 (11%), Positives = 172/719 (23%), Gaps = 148/719 (20%)

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
            +  + ++I V VR   D P    L      DY I    + +   T H   + L A  R  
Sbjct: 343  QGYRYREIAVFVR---DMPCYAELLTLTFADYGIPCYLDAKRPSTHHPLAELLRAAARTA 399

Query: 429  LSQEDDLSFVCMLKS---PLFNFSEDDIFKICTQRHETETV-----------------YE 468
                D  +    L++   P+   SE++   +       E V                 + 
Sbjct: 400  WRGWDYETMFRALRTGFFPVLGASEEETQVLAPSGDWQEAVDRLENYCLAYGIRTQRQWT 459

Query: 469  YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
              + +     +      +       IA+  +       I       ++ +SR        
Sbjct: 460  ATEDWDFARRAIAADAYESEDNAARIAEEEAIDAVRRRIAAPLALLKERLSRAQGTARTR 519

Query: 529  LDEFLNF-------------------------TLRNEQNSYSSLQELISELEQYPPTIKR 563
                                               + Q   S +      +E        
Sbjct: 520  TQALYELLMELDVPRVLETWRTAADAEGRLADAAAHRQIWTSCMNLFDQMVETGGDEEIS 579

Query: 564  AHSANH------------------NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            AH                      + V I +           V++V   +        ++
Sbjct: 580  AHDYEEILGDGLDALDIALIPPGLDHVTIASFDQNSLAGIRAVYIVGANAGTMPRAGAQQ 639

Query: 606  MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +  +                   I     +             LY G T A + L + 
Sbjct: 640  GVLSDAERLSMNEMFHALHEGVAPEIFGGGREQSFL-----ERYRLYRGFTAAREYLWVS 694

Query: 666  KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT------------------------ 701
                 S+    +       +     +   +    +                         
Sbjct: 695  YALAGSDGSALSPSPLIARLRRLEPSFLSIPLATVEREDALVLAAPRPALSALSSALLGQ 754

Query: 702  ---NSINKDEWIAYEWSTHHPENTPLERE------ETIKQLMDEQKIPKKLFSPIKNDIN 752
                 +    W  Y W     E  P  R         +++      +  +LF+P +    
Sbjct: 755  KERGDMRPLWWDVYNWMRDDEEMRPSLRLMVGGLFAHLRETEIPPAVAVRLFAPHRRIAG 814

Query: 753  EPYIL------NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHKRK 802
                L        S     G    E  + + Q  + G ++H +L    + +     +   
Sbjct: 815  STTRLEAFRACPFSHFAKYGLALREREVYEFQNNDFGTLLHGILRGYGEWVRATHRNDWS 874

Query: 803  NFITSYCTKNAKLWPA-----------------KEYKNLLLSITRLLENPMMTTAMSCDS 845
                    K  +L                       + +  +  +++    +T   +   
Sbjct: 875  AAAQEGEEKIDELLAQIVPQVRSAVLLSRASYRHRVERIRRTARQVIR--RLTAWAAASE 932

Query: 846  YSEVSVSGKINCPKKDII------------ISGRIDQISISQQN--IFIFEYKTHHHVPQ 891
            +                I            + G+ID+  +S+      + +YKT     +
Sbjct: 933  FRPQGFEVGFGGHDGVRIAEFPLAGRMTLSLRGQIDRYDVSEDGAYYIVLDYKTGTVSLE 992

Query: 892  EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
              E I +    QL +Y  ++     + +   +L   +   +        + A  + S K
Sbjct: 993  LPE-IRHGLKMQLLLYLYVVHCLLRDGAPAGMLYAPAANPLIEPDIRLDDAALQDASAK 1050


>gi|15963788|ref|NP_384141.1| hypothetical protein SMc02759 [Sinorhizobium meliloti 1021]
 gi|15072963|emb|CAC41422.1| Hypothetical protein SMc02759 [Sinorhizobium meliloti 1021]
          Length = 1059

 Score = 78.0 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 70/621 (11%), Positives = 151/621 (24%), Gaps = 77/621 (12%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES---SASILARRIAYTISNMIGTDTIFS 364
           V L E    + ++             D   Q +       LARR+   ++          
Sbjct: 363 VALIEAANEREEATAIAIALRLALEADEESQAALITPDRGLARRVGTELARF---GIEAD 419

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI------------- 411
           +     + A     L R   +  L       L    K  +    R               
Sbjct: 420 DSAGIPLSATPAGALARLLLEATLRPDDPVALVALLKHPLARFGRTADDARRAADVLELA 479

Query: 412 -LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-- 468
            L       D+ AL   +    D                 DDI           +     
Sbjct: 480 ALRGGTDAADVSALEAVLDKALDRQKTDRHPPPWRAGIGPDDIAMARALARRIASAVGPL 539

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
                A+    + +  +  + +                 +  +       +    E  ++
Sbjct: 540 SSNLSADPQTGRHRSTVLPLSDWAERTGR----ALEAAAIDEQGNLGALWAS---EAGEI 592

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           L   L   +  +    +   +    LE        +  S  H  V I     ++     +
Sbjct: 593 LATLLRGIIETDGQMEADGPQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDL 652

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V L       +  +      +  ++    G+     +     +                 
Sbjct: 653 VVLGGMNEGTWPGQTSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQ-------------- 698

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
                  M   + +LI+ +     +      R    +          + K    + ++  
Sbjct: 699 -------MACGTRRLILSRSMRQGSAPTVASRWLQRLQALGGERLTALLKANGADYLHWM 751

Query: 708 EWIAY-EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +   E         P    E   +     ++ +    P          L P       
Sbjct: 752 RILDQGERQPLSERPEPKPPAELQPRKYSFSEVTRLRRDPYAVYARRILRLEP------- 804

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
              ++    D     RGL+ H+++            R+    +      + +  ++    
Sbjct: 805 ---IQPFNRDPGAAERGLLYHRIVDRFVKGGFDPAAREGE-EAMIRLTDEAFDEEKLPAH 860

Query: 825 LLSITR---------LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-S 874
           + +I R          LE           S++EV  +  +     DI ++G  D++   +
Sbjct: 861 IDTIWRPRFQAVGRAFLEWERERRHGIVKSFTEVPAAMDL--GIGDIRLTGIADRLDRLA 918

Query: 875 QQNIFIFEYKTHHHVPQEIEH 895
              I I +YKT      +   
Sbjct: 919 DGTIDIIDYKTGSSPSPKEAR 939


>gi|213400885|gb|ACJ47091.1| hypothetical protein [Wolbachia endosymbiont of Zootermopsis
           nevadensis]
          Length = 157

 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 9/152 (5%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++    +    G+ +   +L  SFRST ++LT+VD++F+     +       
Sbjct: 1   NPHLFNYMQQYFHTKTG--GRDWISCQLEKSFRSTPEVLTLVDRLFNN---FREEISFVD 55

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             I+H   R    G +++W  +  + + +    Q   T   + +    +  +LA+ IA+ 
Sbjct: 56  NEIKHVPHRENDQGYIEIWPALPRRKEEEQQALQIPLTCRENYI---IADRLLAQTIAHK 112

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           I N +    I    K R I+ +DI++LVR+R 
Sbjct: 113 IHNWLNEGRIL-VAKDRHIEPRDIMILVRQRN 143


>gi|73748458|ref|YP_307697.1| hypothetical protein cbdb_A602 [Dehalococcoides sp. CBDB1]
 gi|73660174|emb|CAI82781.1| conserved domain protein [Dehalococcoides sp. CBDB1]
          Length = 379

 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 65/203 (32%), Gaps = 31/203 (15%)

Query: 755 YILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFTL---PEHKRKN 803
             L+ S ID      L+                F+ G  +H   +  F +   P    + 
Sbjct: 2   RPLSYSQIDQYQSCPLKYRFLYIDGLKPLEKGYFSFGTTLHDCAEHFFRVKVPPPLSLEK 61

Query: 804 FITSYCTK-----NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
            +  Y +         +   + Y+ L   I               D +  ++V  +    
Sbjct: 62  LMEYYQSHWRSGGYESVEIEENYRQLGREILA-----EFHRIHRADFHMPLAVEHQYTVN 116

Query: 859 KKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI---AQLSIYEKILKDS 914
              + ++G+ID++       + I +YK++       +     ++    QLS+Y+  ++  
Sbjct: 117 LDGVKLTGKIDRVDKLPSGELCIVDYKSNK------DLFSAEYVQDNLQLSLYQLAVEQI 170

Query: 915 YPNKSLVCLLIYVSEPKVFIIPQ 937
           +        L ++    V   P 
Sbjct: 171 WYLPVGELCLYHLRSNTVMRCPA 193


>gi|114566058|ref|YP_753212.1| UvrD/REP helicase family protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336993|gb|ABI67841.1| UvrD/REP helicase family protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 421

 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 68/529 (12%), Positives = 143/529 (27%), Gaps = 133/529 (25%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +I    +LL + +    I   +      + +DE QDT+  Q++++               
Sbjct: 1   MINRLVELLIREN--PSILKALHLTYPVVFLDEFQDTTFAQFQLLH---------TAFDG 49

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
           S     AVGD+KQ I  + GA P    + ++               I L  ++RS  D++
Sbjct: 50  SETIFTAVGDDKQRIMVWAGAMPDAFSQFEQQF---------DALRISLIFNWRSHEDLV 100

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
             +  V +                                 ++    +            
Sbjct: 101 Q-IQHVIA--------------------------------SRIDPNVEEPEARADRLVDG 127

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
               + + +S  + +  +A  I   +             I+  D+ +LVR R D  L+  
Sbjct: 128 DIAGIWEFASEDMQSDYLAKWIEGEVQAG---------CIEPHDVAILVRMRPD--LVES 176

Query: 392 LTRFLKNDYKISVVGNDRFI-------LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                     + +    R +       L      + L+ L R   ++    ++   L+  
Sbjct: 177 QLSPTFEANGLRLRNVARTVGDIAIQDLLGEELTQILLRLLRLGATKRSPENWNASLR-- 234

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                  D+  +       E     +QK       + +  ++++      A   +     
Sbjct: 235 -------DLQFLEAVEPNDEEGLRRLQKRLQVFTREIRRTMQHLEPEPDSATEITRAAL- 286

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              +G +  R+ F S       D +             +   L      +     +    
Sbjct: 287 -DFIGDQVLRRAFPSYQRQHDFDRVW------------NGFLLLLRECLVNTETWSGTLD 333

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 +  +MT+H +KGLE   +      +Q +                          
Sbjct: 334 EFEGIGQTALMTIHKSKGLEFHTMIFCGLDNQTWWSLTP--------------------- 372

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                              + E     +V  TRA  +       +    
Sbjct: 373 ------------------NRMEELNSFFVAFTRARQRAFFTLCKDQGRT 403


>gi|254775065|ref|ZP_05216581.1| RecB family protein exonuclease [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 301

 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 64/228 (28%), Gaps = 26/228 (11%)

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
             +       P    S      +         +  + +       + +    RG ++H  
Sbjct: 4   QPEARQSAARPTGQVSRPALSPSRAADFKQCPLLYRFRAIDRLPEAPSPAQLRGSLVHAA 63

Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT------------------RL 831
           LQ ++ LP  +R           A          L   +                     
Sbjct: 64  LQQLYELPAAQRGPETALALVGPAWEQLLAASPELTADLDPTQHGQLLAEAQALLAGYYR 123

Query: 832 LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVP 890
           LE+P            E  V  ++       ++ G ID+I ++    + + +YKT    P
Sbjct: 124 LEDPT---RFDPQC-CEERVEVELA---DGTLLRGFIDRIDVAATGELRVVDYKTGKAPP 176

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
                  +  + Q+  Y   L  S         LIY+++ +V      
Sbjct: 177 AARALAEFKAMFQMKFYAVALLRSRGVPPTRLRLIYLADGQVLDYSPE 224


>gi|300781190|ref|ZP_07091044.1| exodeoxyribonuclease V beta subunit [Corynebacterium genitalium
           ATCC 33030]
 gi|300532897|gb|EFK53958.1| exodeoxyribonuclease V beta subunit [Corynebacterium genitalium
           ATCC 33030]
          Length = 274

 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 57/195 (29%), Gaps = 27/195 (13%)

Query: 754 PYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR--KN 803
           P  L+PS  +   +  L+              +    G ++H +L+ +   P  +R    
Sbjct: 7   PLALSPSRANDYLQCPLKYRLRAIDRIPEPKTEAQVTGTLVHAVLEEMHAWPREERTYPA 66

Query: 804 FITSY--CTKNAKLWPAKEYKNLLLS-ITRLLENPMMTTAMS-------CDSYSEVSVSG 853
            +       +   +  +     +       +    ++                 E+ V  
Sbjct: 67  AVKRIKPAWQKMLIDDSSCADPIADEYALFVAARSLLRGYFEMENPHGFDSHAQEMYVDA 126

Query: 854 KINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            +      + + G ID++ I+    I + +YKT                 Q+  Y  +  
Sbjct: 127 VLP---NGVPVRGFIDRVDIAPTGEIRVVDYKTGKKPSPRFSDEA---KFQMRFYALVYW 180

Query: 913 DSYPNKSLVCLLIYV 927
             +        L+Y+
Sbjct: 181 RMFGTIPHQLRLMYL 195


>gi|254519901|ref|ZP_05131957.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
 gi|226913650|gb|EEH98851.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA]
          Length = 760

 Score = 77.7 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 29/134 (21%)

Query: 144 NCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
             ++D +DL  ++  N LL+  +          ++ +HI++DE QD +  Q  ++  LT 
Sbjct: 501 RGIIDEDDLAPLLYINILLEGVEEK--------EKYSHIVVDEAQDYNPFQIYLVNRLT- 551

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                        +L  VGD  Q IY + G     +     I +K       K + ++L 
Sbjct: 552 ----------KGNSLTLVGDIAQGIYYYKG-----IKNWSDIVEKVFEG---KATYMQLT 593

Query: 262 LSFRSTADILTVVD 275
            S+RST +I+   +
Sbjct: 594 QSYRSTVEIIDFAN 607


>gi|149201425|ref|ZP_01878400.1| hypothetical protein RTM1035_17407 [Roseovarius sp. TM1035]
 gi|149145758|gb|EDM33784.1| hypothetical protein RTM1035_17407 [Roseovarius sp. TM1035]
          Length = 979

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/409 (10%), Positives = 108/409 (26%), Gaps = 34/409 (8%)

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           A      +              ++   G E    + E           S S    L  ++
Sbjct: 487 ATHLDLAEKIAQGCHGTGSGTLWLKDAGQEAQKAVTELRAEAHHAGALSASDYSSLFHKI 546

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   R     H  + I     A+   + ++ L       +         +  +L  
Sbjct: 547 --LSAREVRNPVDPHPHILIWGTLEARVQGADLLILAGLNEGSWPESPKPDPWLNRALRH 604

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G+ +   +     +     I                     A+ ++ + +   +++ +
Sbjct: 605 QVGLLLPERRIGLSAHDFQQAI---------------------AAPEVWLTRSVRSADAE 643

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
               R    ++       ++  +  + +  N+        +                   
Sbjct: 644 TVVSRWLNRILNLLSGLPDQGGQAAIEDMRNRGRLWLDRATALEDPGEVPRATRPAPAPP 703

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
              +      + IK  I +PY +    I       L+ L+       RG ++H++L+   
Sbjct: 704 VAVRPDHLTVTEIKRLIRDPYAIYARHI--LKLRPLDPLMRAPDALLRGTVLHEILEGFI 761

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM------SCDSYSE 848
                  ++   +   ++A+   A+           L     +                 
Sbjct: 762 RETLDHPEHCDHATLMRHAETVLAENVPWAEARALWLARLDRVADWFIDTEARRRTLARP 821

Query: 849 VSVS--GKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIE 894
           V     G+   P     +S + D++ +     + I++YKT      + +
Sbjct: 822 VHFEAKGRATLPDLGFTLSAKADRLDLDDLGQLHIYDYKTGAPPSTKEQ 870


>gi|158321322|ref|YP_001513829.1| ATP-dependent nuclease subunit AddB [Alkaliphilus oremlandii
           OhILAs]
 gi|251764576|sp|A8MJ51|ADDB_ALKOO RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|158141521|gb|ABW19833.1| ATP-dependent nuclease subunit AddB [Alkaliphilus oremlandii
           OhILAs]
          Length = 1144

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 61/682 (8%), Positives = 181/682 (26%), Gaps = 144/682 (21%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I +++           +  + KDI ++          + + + +  +Y I    
Sbjct: 318 ENVAAQIIHLVRD---------KGYRWKDIALV---SAGLEEYSMILKRVFEEYSIPYFM 365

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------- 459
           +++  + ++  ++ +++    +            LK+   + ++D++ ++          
Sbjct: 366 DEKRSIMNNPIVELILSSIGILARGYQYEDVFRFLKTGFGDLNKDEVEELENYVLQYGIK 425

Query: 460 -------------RHETETVYEYIQKFANCGISKFQHVIKYI------------------ 488
                          + E + +      +    K+    +                    
Sbjct: 426 GKDYAVPFTKGFTNKKHEEIEQEESDEIHEEKIKYNEFRERFIAPFLKFEKKIYRKKKVG 485

Query: 489 ---HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV-LDEFLNFTLRNEQNSY 544
                L    +  +        +   + ++ F     N  I   + E L+          
Sbjct: 486 HITKALFEFMKDLNIEAKLDQWIEELREKKYFEYVNENTQIWNKVMEILDQLTEILAEES 545

Query: 545 SSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           ++L+E    LE      +        ++V + ++  +K  +   +F++     +      
Sbjct: 546 TTLKEYGRILEAGFLACEVGVIPTTIDQVLVGSIERSKSHDIKALFVIGVNDGILPSSRE 605

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
               ++    +          +   N ++             E    +Y  +++ ++ L 
Sbjct: 606 DGGILLDHERESLDKKGLSIGNTLENALL-------------EEQFTIYSALSKPTEYLW 652

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           I         K   Q    D +   F N      +  T +           +  +   + 
Sbjct: 653 ISYALADQEGKAQRQSILIDRIKKLFRNLNIQSDVVPTLNRQLHLITTPISTFKYMTESI 712

Query: 724 LEREETIKQLMDEQKIPKKL---------------------------FSPIKNDINEPYI 756
            +  +          + +                                 ++    P  
Sbjct: 713 RQNIDDKPMEDIWWDVYQWYSNESQWDERRNLMVKGLFHENQISYIGEQKARSLYEHPIK 772

Query: 757 LNPSTIDTKGKTNLESLLS-DNQTFNR----------GLIIHKLLQVIFTLPEHKRKNFI 805
            + S ++          ++   +   R          G + H  ++       +++  + 
Sbjct: 773 SSVSRLERFANCPFSHFVTYGLRPKERKEYQLSNPDIGRLFHDSMENFTKELVNEQIQW- 831

Query: 806 TSYCTKNAKLWPAKEYKNLLLSITR--LLENPMMTTAMSC---------DSYSE------ 848
                + +  +  K    ++       +L        ++           + +E      
Sbjct: 832 KDLTREQSDYFVEKVIDEMVPEFEHGIMLSTHRYQYLVTRLKRISKRAMWTLTEHIKKGQ 891

Query: 849 -VS--------VSGKINC------PKKDIIISGRIDQISI---SQQNIF-IFEYKTHHHV 889
            V         + G I          + I + GRID++ I      N   I +YK+    
Sbjct: 892 FVPMGHEIIFGLEGDIPPIVIELESGEKIYLEGRIDRVDILNDEDGNYVKIIDYKSG-SK 950

Query: 890 PQEIEHIPYTHIAQLSIYEKIL 911
              +  + Y    QL +Y   +
Sbjct: 951 EFSLSDVYYGFQIQLLVYLDAV 972


>gi|164687185|ref|ZP_02211213.1| hypothetical protein CLOBAR_00826 [Clostridium bartlettii DSM
           16795]
 gi|164603609|gb|EDQ97074.1| hypothetical protein CLOBAR_00826 [Clostridium bartlettii DSM
           16795]
          Length = 1151

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 114/935 (12%), Positives = 251/935 (26%), Gaps = 220/935 (23%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           ++    L     +   +E    +   +D +D++ +    L+                 ++
Sbjct: 152 ETLRLKLKDVSRIYEAFENELHE-NYVDSQDMLGSLAVKLENTSYFDGC---------YV 201

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP-KRVLR 239
            IDE    +  Q+ ++  L +         +     +          ++   +P  R   
Sbjct: 202 YIDEFTGFTPKQYSILAKLLKKAKEVTIALTVDNVNYL---------NYRKNDPFSRTKY 252

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                +K A + G K +              + +        EN + L            
Sbjct: 253 TYEKLRKLAMDNGVKINPY------------VDLNRGKIKRFENNKELLH---------- 290

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                   ++ +      HD +          + +   +          IA  I N++  
Sbjct: 291 --------LERYYHAYPYHDYEEEVNYIKIKEFNNLYEE-------VEHIAKEIVNLVRD 335

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      I+ KDI V  R   D     FL   + N+Y+I    + +  +  +  I 
Sbjct: 336 ---------NNIRYKDITVATR---DLNRYDFLVHSIFNEYEIPNFIDKKRDVKSNPIIV 383

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ----------RHETETVYEY 469
            + +       +         LKS L   S D++  I               E +  Y  
Sbjct: 384 LITSALEIKNKRYSYEVMFRYLKSGLIGLSVDEVSLIENYVILNGIKGKKWLEEKWEYRA 443

Query: 470 IQKFANCGISKFQHVIKYIHELIHIA-------------------QFCSPHDFF------ 504
           I  + +    +    I  I+E+ +                        + ++F       
Sbjct: 444 INNYNSEMSEEEAETINKINEIKNRVLGPVIKLQNKLKGKKSCREICKNIYEFLVDINME 503

Query: 505 TLILGAKKGRQQ----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
             I    +G ++     I+   ++V D++ + L+  +    +   S+   I  +      
Sbjct: 504 ETIYDLVEGFKEKGELEIASQYSQVWDIVIDILDQIVEIMGDDVVSMDRFIKIISLGFEE 563

Query: 561 IKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
            +        ++V + +V   K   +  ++L+     +F     +K           GI 
Sbjct: 564 YELGLVPPSVDQVLVSSVDRMKNPNTKYLYLIGVTDGIFPLISKEK-----------GIL 612

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
               ++   +  +   I    K+   E   L+Y  +   S+ LI+      S  +     
Sbjct: 613 TDKDRNTLMDRGIEVDIDSKTKT--FEEQFLVYKALISTSENLILTYPVADSEGRSLRPS 670

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                +   F   E    +       ++E +          N  + + ++     + + +
Sbjct: 671 IIISRLKKIFPKLEVESYLLENKRETEEEMMDDITVKSPTFNKMVNKIKSFDNGEEIENL 730

Query: 740 PKKLFSPIKND------------------------------INEPYILNPSTIDTKGKTN 769
              ++    ND                              + E + L+ S ++      
Sbjct: 731 WLDVYRYFANDKKYKEITTKIISGLTYTNMVHKVSEEKINQLYETHNLSVSRLEKYSSCP 790

Query: 770 LESLLS-DNQTFNR----------GLIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKL 815
               +    +   R          G  IH ++       E           +Y  K    
Sbjct: 791 FAYFIQYGLKAQERKEYTFAAPDLGTFIHNIMYEFSKSLEKDGLHWSQINDAYIEKKVVS 850

Query: 816 WPAKEYKNLLLSITRLLENPMMTTA-----------------------MSCDSYSEVSVS 852
                   +   I     +P                                 Y EV+  
Sbjct: 851 IVDAMISQIPGFILN--SSPRYKYLSYRLKKMLMAAINIIAIQIKSGEFEPIDY-EVNFG 907

Query: 853 GK-------INCPKKDII-ISGRIDQI---SISQQNIF-IFEYK-THHHVPQEIEHIPYT 899
                    I       I + G+ID+I     +      I +YK +  ++   +  + Y 
Sbjct: 908 QTGKYPPIRIVLEDGTQINLIGQIDRIDEFDENDDRYIRIIDYKSSDKNI--NLTEVYYG 965

Query: 900 HIAQLSIYEKIL--------KDSYPNKSLVCLLIY 926
              QL +Y   +           YP       ++Y
Sbjct: 966 LQLQLLVYLDAILESAMKKGNSIYP-----AAILY 995


>gi|203463426|ref|YP_002224009.1| gp68 [Mycobacterium phage Solon]
 gi|197312613|gb|ACH62967.1| gp68 [Mycobacterium phage Solon]
          Length = 274

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 56/234 (23%), Gaps = 69/234 (29%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVI----F 794
            +N   E    + S +    K      L+ ++           +G  +H + +       
Sbjct: 8   TRNYTYEKKPRSVSQLSQFDKCPFSWKLARHERVWKRPAAWLQQGTGVHAVAEKYMLSKL 67

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS------- 847
                 R+     +  + A        +            P +    S   Y        
Sbjct: 68  AGSPLTREECYEIFKAEYADGINEATEE-----------TPNLGWWFSSGPYRGADDIER 116

Query: 848 ----------------------EVS--------VSGKINCPKKDIIISGRIDQISISQQN 877
                                 EV         +   I      I I G ID + +    
Sbjct: 117 RWGIGLQQVDKTLDWIDNHQSLEVWHTPDGTPGIELAIEFELDGIEIRGYIDAVLVLDGE 176

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
           + + ++KT      +          QL++Y   LK  Y  +    +       K
Sbjct: 177 VLVVDWKTGLKPGDD---------FQLAVYALALKQLYGVEITRGVYFMAKTGK 221


>gi|153931888|ref|YP_001382810.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC
           19397]
 gi|153936482|ref|YP_001386377.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str.
           Hall]
 gi|251764544|sp|A7FR61|ADDB_CLOB1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|152927932|gb|ABS33432.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str. ATCC
           19397]
 gi|152932396|gb|ABS37895.1| ATP-dependent nuclease subunit B [Clostridium botulinum A str.
           Hall]
          Length = 1147

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 71/680 (10%), Positives = 186/680 (27%), Gaps = 140/680 (20%)

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + KDI V+     D      +   +   Y I    + +  + ++  I  +++    +
Sbjct: 334 KGCRFKDIAVIT---GDLEGYENIISSVFLQYNIPFFIDKKREINNNPIIVLILSALEVL 390

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ---------RHETETVYEYIQKFANCGIS 479
                  S    LK+ L + + +++  +            +   + ++EY          
Sbjct: 391 SKNWTYESVFRYLKTGLLDINNEEMDILENYVLANGIKGYQWTNDKLWEYKSFSNYELED 450

Query: 480 KF-QHVIKYIHELIHIA----------------------------QFCSPHDFFTLILGA 510
           +  + ++  I+++ + A                               +  D    ++  
Sbjct: 451 QVEKELLAKINDIRYKAMEPIVTLNKNFKSIDKAKEFCEVLYEFLCNINLPDKIQNMIED 510

Query: 511 KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
            K   +   +   N++ +++ E L+  +        SL+E    L+      +       
Sbjct: 511 FKVEGEIEKASEYNQIWNIVMEVLDQIVEVIGEEKISLKEFFKILQTGLSEYEIGLIPPT 570

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            ++V + ++   +      +++V     +F                + GI     +    
Sbjct: 571 LDQVMVGSITRLRSHNINTLYIVGVNDGIFPSP-----------LKEEGILSDDDRKFLG 619

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           +  +         +   E   L+Y  +T  S  L +         K          +   
Sbjct: 620 DKGLEIAKDTKSIA--FEEQFLVYSTLTTPSKYLRLSYPIADGEGKTLRPSIIISRIKKI 677

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--EQKIPKKLFSP 746
           F N      I   N   ++                  R++     +D       K     
Sbjct: 678 FTNICEENDIVKLNGEEEELKNISSAKPTFNYLISNLRKDVEGAKIDNIWGDTYKWYLEN 737

Query: 747 ---------------------------IKNDINEPYILNPSTIDTKGKTNLESLLS-DNQ 778
                                      I+N   +P  ++ S ++   +      +    +
Sbjct: 738 EFWIEKLNRLIKGFDYTNQSKYIETKKIRNLYGKPLKISVSRVEKFSQCPFAYFVQYGLK 797

Query: 779 TFNR----------GLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKN-- 823
             +R          G+ +H +L+      E    +      ++  +       +E  N  
Sbjct: 798 AKDRKIFNLSYPDLGIFMHSILEKFSHELEKQGLEWDTMDLNWAEEEIDKLINEELDNKS 857

Query: 824 ------------LLLSITRLLENPMMTTAMSCDSYS----EVSVSGKINCPKK------- 860
                       +  S+ ++L+  +    +                  +           
Sbjct: 858 LDILNSSKRYEYVTKSVKKILKRSI--WLIGEHIKRGNFKPSYYELSFDIDGDYPPIAME 915

Query: 861 ---DIIIS--GRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI- 910
                +++  GR+D++         +  I +YK+      ++  + Y    QL IY    
Sbjct: 916 LHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGA-KEFKLSDVYYGLQLQLLIYLDAI 974

Query: 911 LKDSYPNKSLV---CLLIYV 927
           L +      +      L+Y+
Sbjct: 975 LTELAERSGINGEPGALLYL 994


>gi|307310976|ref|ZP_07590621.1| double-strand break repair protein AddB [Sinorhizobium meliloti
           BL225C]
 gi|307322013|ref|ZP_07601392.1| double-strand break repair protein AddB [Sinorhizobium meliloti
           AK83]
 gi|306892351|gb|EFN23158.1| double-strand break repair protein AddB [Sinorhizobium meliloti
           AK83]
 gi|306899656|gb|EFN30283.1| double-strand break repair protein AddB [Sinorhizobium meliloti
           BL225C]
          Length = 1059

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 70/621 (11%), Positives = 151/621 (24%), Gaps = 77/621 (12%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES---SASILARRIAYTISNMIGTDTIFS 364
           V L E    + ++             D   Q +       LARR+   ++          
Sbjct: 363 VALIEAANEREEATAIAIALRLALEADEESQAALITPDRGLARRVGTELARF---GIEAD 419

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI------------- 411
           +     + A     L R   +  L       L    K  +    R               
Sbjct: 420 DSAGIPLSATPAGALARLLLEATLRPDDPVALVALLKHPLARFGRTADDARRAADVLELA 479

Query: 412 -LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE-- 468
            L       D+ AL   +    D                 DDI           +     
Sbjct: 480 ALRGGTDAADVSALEAVLDKALDRQKTDRHPPPWRAGIGPDDIAMARALARRIASAVGPL 539

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
                A+    + +  +  + +                 +  +       +    E  ++
Sbjct: 540 SSNLSADPQTGRHRSTVLPLSDWAERTGR----ALEAAAIDEQGNLGALWAS---EAGEI 592

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           L   L   +  +    +   +    LE        +  S  H  V I     ++     +
Sbjct: 593 LATLLRGIIETDGQMEADGPQWCDILEALAASEAVKPRSMRHPRVFIFGALESRLQSVDL 652

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V L       +  +      +  ++    G+     +     +                 
Sbjct: 653 VVLGGMNEGTWPGQTSNDPFLSRTMKAGIGLEPPERRIGQLAHDFQ-------------- 698

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
                  M   + +LI+ +     +      R    +          + K    + ++  
Sbjct: 699 -------MACGTRRLILSRSMRQGSAPTVASRWLQRLQALGGERLTALLKANGADYLHWM 751

Query: 708 EWIAY-EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
             +   E         P    E   +     ++ +    P          L P       
Sbjct: 752 RILDQGERQPLSERPEPKPPAELQPRKYSFSEVTRLRRDPYAVYARRILRLEP------- 804

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
              ++    D     RGL+ H+++            R+    +      + +  ++    
Sbjct: 805 ---IQPFNRDPGAAERGLLYHRIVDRFVKGGFDPAAREGE-EAMIRLTDEAFDEEKLPAH 860

Query: 825 LLSITR---------LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-S 874
           + +I R          LE           S++EV  +  +     DI ++G  D++   +
Sbjct: 861 IDTIWRPRFQAVGRAFLEWERERRHGIVKSFTEVPAAMDL--GIGDIRLTGIADRLDRLA 918

Query: 875 QQNIFIFEYKTHHHVPQEIEH 895
              I I +YKT      +   
Sbjct: 919 DGTIDIIDYKTGSSPSPKEAR 939


>gi|192823882|ref|YP_001994800.1| gp69 [Mycobacterium phage DD5]
 gi|192824154|ref|YP_001994709.1| gp68 [Mycobacterium phage Lockley]
 gi|190610384|gb|ACE79905.1| gp68 [Mycobacterium phage Lockley]
 gi|190610660|gb|ACE80178.1| gp69 [Mycobacterium phage DD5]
          Length = 272

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 56/234 (23%), Gaps = 69/234 (29%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVI----F 794
            +N   E    + S +    K      L+ ++           +G  +H + +       
Sbjct: 6   TRNYTYEKKPRSVSQLSQFDKCPFSWKLARHERVWKRPAAWLQQGTGVHAVAEKYMLSKL 65

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS------- 847
                 R+     +  + A        +            P +    S   Y        
Sbjct: 66  AGSPLTREECYEIFKAEYADGINEATEE-----------TPNLGWWFSSGPYRGADDIER 114

Query: 848 ----------------------EVS--------VSGKINCPKKDIIISGRIDQISISQQN 877
                                 EV         +   I      I I G ID + +    
Sbjct: 115 RWGIGLQQVDKTLDWIDNHQSLEVWHTPDGAPGIELAIEFELDGIEIRGYIDAVLVLDGE 174

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
           + + ++KT      +          QL++Y   LK  Y  +    +       K
Sbjct: 175 VLVVDWKTGLKPGDD---------FQLAVYALALKQLYGVEITRGVYFMAKTGK 219


>gi|163738015|ref|ZP_02145431.1| hypothetical protein RGBS107_06374 [Phaeobacter gallaeciensis
           BS107]
 gi|161388631|gb|EDQ12984.1| hypothetical protein RGBS107_06374 [Phaeobacter gallaeciensis
           BS107]
          Length = 977

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 113/964 (11%), Positives = 258/964 (26%), Gaps = 99/964 (10%)

Query: 20  LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
             P        +   +    E  +P  L K + +   S+               L  + +
Sbjct: 13  AVPCGVDFPRALVDGLVARSENTSPEELAKVEFIVNTSRMARRVRDLFDQGPALLLPRIS 72

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
              ++  +   +  P     L++  +    I           +  +   L+  L A ++E
Sbjct: 73  LLSDLDMRATLRGLPPALPPLRRRLELSQLIAKLLEAQPDLAARSSLYDLSDSLAALFDE 132

Query: 140 AKKKN------CVLDFEDL----------IINTNDLLKKRDVSAWIRYKIDQEINHILID 183
            + +         LD  D+          I   ++  +  + +   + +  +++   LI+
Sbjct: 133 MQGEGVSPETIRSLDVSDMSGHWARAQQFIAIADEFAETHEHAMDAQAR-QRQVVLDLIE 191

Query: 184 EVQDTSLIQWEVI-------RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           E QD S  Q  VI       R  T               +    D++Q  + +   +   
Sbjct: 192 EWQD-SPPQHPVILAGSTGSRGTTLMLMEAIARLPQGAVILPGFDDQQPGHVWEHLDDPL 250

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +                   + +L ++      +   VD + +     + +S        
Sbjct: 251 MSE-------DHPQYRFFKIMRDLDMT---PDQVRPWVDAIPASMARNRLVSLALRPAPV 300

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
             +          + +        +    +    +    L + +     A  I      M
Sbjct: 301 TDAWMREGPELRDIDQATADVSLVEAPNPRAEALAIALRLRKAAEDGQTAALITP--DRM 358

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           +      +  +   I   D      +             L       +  +    L  H 
Sbjct: 359 LTRQVAAALDRW-DILPDDSAGQPLQLSPPGRFLRHIAELFCK---PLACDTLLTLLKHP 414

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--EYIQKFA 474
              D    G  +    +    +     P  +      F+I  +     T +  +      
Sbjct: 415 LCHDGAGRGDHLRHTRELELRLRRYGPPFPDPDSFAAFEIGRELMPGWTAWLTQCFADKP 474

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
             G       +  +  L       S +     +   K GR+           ++++    
Sbjct: 475 ISGTQPLSQWVDALRNLAEAISRGSQNAADGGLWDKKAGRKAL---------EIVNNLQA 525

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                 Q +     +L+           R   A +  + I     A+   + +V L    
Sbjct: 526 EAGYGGQMTARDFADLLR--ALLSQGEVRDRDAPYGSILIWGTLEARVQGADLVILGGLN 583

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              +         +   L    G+ +   +     +     +   +            V 
Sbjct: 584 EGSWPEAATPDPWLNRQLRHQAGLLLPERRIGLSAHDFQQAVAAPE------------VW 631

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +TR+            S+E  +    W + + +                +         W
Sbjct: 632 LTRSER----------SDEADTVPSRWLNRMTNLLSGLPGQGGPAALADMRARGQEWLGW 681

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPSTIDTKGKTNLESL 773
           +      T L   +           P++L  + I   I +PY +    +       L+ L
Sbjct: 682 AEVLEAPTSLPPAKRPAPRPPVAARPRRLTITEIPRLIRDPYAIYAKHV--LKLRPLDPL 739

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRK--------NFITSYCTKNAKLWPAK--EYKN 823
           + +     RG+++HK+L+          K           T++         A+      
Sbjct: 740 VQEPDALLRGIVLHKILEDFIKASVTDPKRLTVPDFLTTATAHLEAKVPWPVARSLWLAR 799

Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFE 882
           L       +       A++  S  EV  SG +     D  I+G  D+I + +   + +F+
Sbjct: 800 LERIAEDFITGEQQRQAIAQPSGFEV--SGTVRVAPLDFEIAGTADRIDVDERGGLHLFD 857

Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKD----SYPNKSLVCLLIYVSEPKVFIIPQN 938
           YKT     +  +        QL I   + +      Y    +   L    +  +  +   
Sbjct: 858 YKTGDPPTESQQKTFEK---QLLIEAAMAERGAFERYGEGRVERALFLGLKSPLKEVAAP 914

Query: 939 KLNK 942
            L++
Sbjct: 915 LLDE 918


>gi|115526052|ref|YP_782963.1| superfamily I DNA/RNA helicase-like protein [Rhodopseudomonas
           palustris BisA53]
 gi|115519999|gb|ABJ07983.1| superfamily I DNA and RNA helicases-like protein [Rhodopseudomonas
           palustris BisA53]
          Length = 594

 Score = 77.7 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 18/155 (11%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           ++   L   D  +     L+    S  +   I    + +++DE QD + +  +++  L  
Sbjct: 176 RRKGYLSAADARVEALARLRDPQWSGSLGRAIAARFHEVIVDEAQDCNPLDLQLLTWL-- 233

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                         +  V D  Q+IY F   +P  +    +             S +   
Sbjct: 234 --------RQHGLRVTIVSDADQAIYGFRQGDPTALAMFAQAYGAD--------SRLGFS 277

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +FRS+  I      +    E  + L E+++ T+ 
Sbjct: 278 GNFRSSPAICRCAATLRGRAEPDEALGENASVTLP 312


>gi|288923768|ref|ZP_06417860.1| RecB family exonuclease-like protein [Frankia sp. EUN1f]
 gi|288344884|gb|EFC79321.1| RecB family exonuclease-like protein [Frankia sp. EUN1f]
          Length = 363

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 66/232 (28%), Gaps = 43/232 (18%)

Query: 751 INEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR- 801
                 L+PS         L              ++   RG ++H +L+ +F LP  +R 
Sbjct: 80  PRPVASLSPSRAADFVNCPLRYRFRVIDRIPEPPSEAATRGTVVHGVLERLFDLPPRERT 139

Query: 802 ------------KNFITSYCTKNAKLWPAKEYKNLLLSITRL------LENPMMTTAMSC 843
                        + +    +              L S   L      LE+P     ++ 
Sbjct: 140 QPAAAGLVEPVWADLLARDASLGGLFTDPTALAAWLDSARDLLTGYFTLEDPR---RLAP 196

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISIS----QQNIFIFEYKTHHHVPQEIEHIPYT 899
            +  E+ V   +      + + G +D++  +       + + +YKT        E     
Sbjct: 197 AAR-ELYVEHVL---GSGLRLRGYVDRLDEAQTPQGTALRVIDYKTGRSPGPAFEGAA-- 250

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            + Q+  Y  +L  S         L Y+       +              +I
Sbjct: 251 -MFQMRFYALVLWRSRGVLPRELRLYYL--GDRTWLRAAPDEAELRATERRI 299


>gi|302518122|ref|ZP_07270464.1| RecB family exonuclease [Streptomyces sp. SPB78]
 gi|318059110|ref|ZP_07977833.1| RecB family exonuclease [Streptomyces sp. SA3_actG]
 gi|318079114|ref|ZP_07986446.1| RecB family exonuclease [Streptomyces sp. SA3_actF]
 gi|302427017|gb|EFK98832.1| RecB family exonuclease [Streptomyces sp. SPB78]
          Length = 278

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 61/208 (29%), Gaps = 34/208 (16%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKR-KNFITSYCTKNAKLWPA--KEYKNLLLSI- 828
               ++   RG ++H +L+ +F  P  +R     T+      +   A   E   L  ++ 
Sbjct: 16  PEKPSEAATRGTLVHAVLERLFDAPAAERTAERATALLPGQWEKLRAARPELDALFTAVA 75

Query: 829 ---------TRLLENPMMTTAMSCDSYSEVSVSGKINCPKK--------------DIIIS 865
                           +     S +   E   + +     +               + + 
Sbjct: 76  AADGDGDGAEGTAGERLARWLASAERLVERWFTLEDPTRLEPAEREMFVETSLDSGLRLR 135

Query: 866 GRIDQISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
           G ID++ I+     + I +YKT      +        + Q+  Y  ++            
Sbjct: 136 GIIDRVDIAPGTGDVRIVDYKTGKAPRPQYAEGA---LFQMKFYALVVWRLKGVVPRRLQ 192

Query: 924 LIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           L+Y+    V        +     +  K+
Sbjct: 193 LVYLGSGDVLAYDPVPGD--LERVERKL 218


>gi|282721349|gb|ADA83798.1| gp76 [Mycobacterium phage SkiPole]
          Length = 267

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 55/234 (23%), Gaps = 69/234 (29%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVI----F 794
           +     E    + S +    K      L+ ++           +G  +H + +       
Sbjct: 1   MSEYRYEKKPRSVSQLSQFDKCPFSWKLARHERVWRRPAAWLQQGSAVHAVAEKYMLSKL 60

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS------- 847
                 R+     +  + A        +            P +    +   Y        
Sbjct: 61  AGSPLTREECYEIFKAEYADGINEATEE-----------TPNLGWWFASGPYRGADDIER 109

Query: 848 ----------------------EVS--------VSGKINCPKKDIIISGRIDQISISQQN 877
                                 EV         +   I      I I G ID + +    
Sbjct: 110 RWGIGLQQVDKTLDWIDNHQSLEVWHTPDGTPGIELAIEFELDGIEIRGYIDAVLVLDGE 169

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
           + + ++KT      +          QL++Y   LK  Y  +    +       K
Sbjct: 170 VLVVDWKTGLKPGDD---------FQLAVYALALKQLYGVEITRGVYFMAKTGK 214


>gi|118374210|ref|XP_001020295.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89302062|gb|EAS00050.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 745

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++   I+ DE QD + +Q+++                    L  VGD+ Q+IY F G+  
Sbjct: 153 EKYKIIIFDEFQDINQLQYDIFMLF---------KKIGESILVVVGDDAQNIYEFRGSNY 203

Query: 235 KR-----VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           +      +    R N++   +       I+L  +FR ++ I    + +  
Sbjct: 204 EFLRSKVIEDVNRENKRIYGSEDYTMLDIKLTTNFRCSSKITKFANDIIK 253


>gi|213400865|gb|ACJ47081.1| hypothetical protein [Wolbachia endosymbiont of Nasonia
           longicornis]
          Length = 157

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 9/152 (5%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++    +    G+ +   +L  SFRST ++L +VD++F+     +     + 
Sbjct: 1   NPHLFNYMQQYFHTKTG--GRDWISCQLEKSFRSTPEVLMLVDRIFNN---FRAEISFND 55

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             I+H   R    G +++W  +  + + +    Q   T   + +  +    +LA+ IA  
Sbjct: 56  NEIKHVPHRENDQGYIEIWPALPRRKEKEQQALQIPLTCRENYIIAD---RLLAQTIANR 112

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           I N +    I    K R I+ +DI++LVR+R 
Sbjct: 113 IHNWLNEGRIL-VAKDRHIEPRDIMILVRQRN 143


>gi|229005270|ref|ZP_04162986.1| UvrD/Rep helicase [Bacillus mycoides Rock1-4]
 gi|228755982|gb|EEM05311.1| UvrD/Rep helicase [Bacillus mycoides Rock1-4]
          Length = 698

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 98/272 (36%), Gaps = 49/272 (18%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKF 78
           + W      V +I K++ +  E  +  + K+ + L    +         +    F   + 
Sbjct: 329 EAWDKASIAVEEIRKWMQV--EYKHYPLRKRRERLVGRIK-----RWIEIELKKF---EG 378

Query: 79  TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
           T +K    + + K++        K   +   +    +  K  +         + L    E
Sbjct: 379 TNEK----KALKKEATKRLNAYMKFWPKMSPLSFYSSMMKQKEILEVLP---EELVQETE 431

Query: 139 EAKKKNCVL--DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           +  +K  V   D   LI   + L            +I Q+ +H++IDE QD S  Q  ++
Sbjct: 432 KNCRKKEVYVEDLAPLIHIHHRLAG---------IEIGQKFHHVVIDEAQDFSPFQIYIL 482

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
           + +T              +   +GD  Q+IY + G   +     K + Q+          
Sbjct: 483 KEIT-----------MGNSFTILGDLSQAIYDYQG--IEDWNDFKEVFQETGY------- 522

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
             EL  S+RST +I+   ++V    E   GL+
Sbjct: 523 -YELTRSYRSTKEIIEFANEVIKNAEIPVGLA 553


>gi|291165682|gb|EFE27730.1| ATP-dependent nuclease subunit B [Filifactor alocis ATCC 35896]
          Length = 1122

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 75/708 (10%), Positives = 196/708 (27%), Gaps = 133/708 (18%)

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS------ 341
           ++++   +R  + +      V+  +      + Q   +            + SS      
Sbjct: 241 TQETVKKLREFAQKSNIPVKVEFEDTNPVLEEFQLLGKNLFDYKNVVYPKETSSVSLTVA 300

Query: 342 --ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    I   I  ++  +           + ++I +LV    D        R +   
Sbjct: 301 KTTEEEVHWICNKICELVQEE---------GYRYREIGLLV---TDIREYGRFIRQIFPM 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC-- 457
           Y I V  +++  L    A+  + +L   + +          LK+   +FS+ +I ++   
Sbjct: 349 YHIPVFVDEKKDLIHSPAMHAIFSLWDIVSNGFRYEDVFSFLKAGFTSFSQSEIERLENF 408

Query: 458 --TQRHETETVYEYIQ----KFANCGISKFQHVIKYIHEL-----IHIAQFCSPHDFFTL 506
               +   E  ++       + +     +   + +   ++       I +     +F   
Sbjct: 409 VLAHKIRGEMYFQEKYFLKGEESEEERHQILDIRQRFEDMLLPFYRSIKKKGMVEEFAKQ 468

Query: 507 ---ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--EQYPPTI 561
               L  K   Q+            L+EF +   +      S L++++  L       T 
Sbjct: 469 SVSFLIEKNFPQKIEEYVEELKESGLEEFADENRQVWNIFVSILEQMVELLGSRMVKATE 528

Query: 562 KRA-------------HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            R                 + ++V + T+  ++   +  +F++     +F     +   +
Sbjct: 529 FRDILYAGIQGHKVGILPPSQDQVIVGTLDRSRTTPTEHLFVLGLHDGMFPKVQKEGSVL 588

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                       +   S              ++  Q E     Y  +T+    + +    
Sbjct: 589 EEEERTKLLQYGFHLSSV-------------REKLQAEERLSWYNHITQTKTAVYLSYAE 635

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS-----INKDEWIAYEWSTHHPENTP 723
            + ++K      + D +   F     +   +  +S         + +A        E+  
Sbjct: 636 MSYDKKVLYPSFYVDKIRRQFPKMNVIVPKRYDDSMLYSKQAFLQQLAQMTRPVLEESDS 695

Query: 724 LEREETI----------KQLMDEQKIPKKLFSPIKNDINEPYI---------LNPSTIDT 764
           LE+EE            +Q  +         +P    I + Y+          + S ++ 
Sbjct: 696 LEQEERAFCLQGWDYLKQQQEETLFQSAVSENPSVRYIPQKYVTSLYGNKVYFSASGLEQ 755

Query: 765 KGKTNL-----ESLLSDNQTF------NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
             +         +L    +        + G+++H  +       +         +  K  
Sbjct: 756 YARCPYKHFIHRALSPKERARYEMEETDIGILVHGCIDEFTDFLKKH-PELSEQWDEKRN 814

Query: 814 KLWPAKEYKNLLLSIT--RLLENPMMTTAMSCDSYS----------------------EV 849
           +      +      +      +N      +     +                      EV
Sbjct: 815 QEEINAIFSQYADKMLGVSFEDNARNQYLLRKIRKTTEETAKYVVRHLNLGTFKIWGQEV 874

Query: 850 SV-----SGKINCPKKDIIISGRIDQISI---SQQNIF-IFEYKTHHH 888
                     +   +    + GRID++ +     ++   + +YKT   
Sbjct: 875 GFGYGKDYPAVELIEDTAYLRGRIDRVDVCHKDDKDYIKVIDYKTGKK 922


>gi|196228889|ref|ZP_03127755.1| hypothetical protein CfE428DRAFT_0919 [Chthoniobacter flavus
           Ellin428]
 gi|196227170|gb|EDY21674.1| hypothetical protein CfE428DRAFT_0919 [Chthoniobacter flavus
           Ellin428]
          Length = 991

 Score = 77.7 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/509 (9%), Positives = 126/509 (24%), Gaps = 63/509 (12%)

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            +   + E++ +            +  +  L   A           I  A    ++  + 
Sbjct: 398 DDLGVLAEFLARHPREQSRALAAALHTLPLLPERATLGEFIQRTHEIFEASAWTER-AAA 456

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTA 580
             +   D      N +     +  + L+ L   L  +        S  ++ V ++    A
Sbjct: 457 LQHFARDW-----NQSRDLLISRRTWLRWLQETLVSWQARRAEKGSHPYSRVHLLPYAQA 511

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ-----------SKSRN 629
                  + +       +     +   +           +                    
Sbjct: 512 DSQAWTHLIVAGLNEGQWPPPFDEAGFLGEDEIAALNRQVRTLNTRASVQGSQGEGHVTV 571

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGM-TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                L     +       +       T  +    +  H   + E+  N   ++  ++  
Sbjct: 572 QAGRALCLGPVEKRTIVERQFFNTLESTTLAITATMQLHDEAAPERPLNPSEFFTRLHFC 631

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET---IKQLMDEQKIPKKLFS 745
                  ++           W         P + P   ++T               +   
Sbjct: 632 ARGRAVSQQTLTNLHGETVRWHGTAAVLLVPISEPAAAQQTRIAFDARRVASYPFGEYEF 691

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLE-------------SLLSDNQTFNRGLIIHKLLQV 792
            ++     P  L  ++ +T      +             +      T   G  +H+ L V
Sbjct: 692 ALRGAPPRPLRLAATSWETALAAPTQIFLSAVLGVSATNTEEETPWTLAHGSWVHRWLSV 751

Query: 793 I--------------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
           I                  + + +    S+  + A    A+    +        +    T
Sbjct: 752 ITGSIAPGTFAPLPPPAELQDRVRKAAESFHDRVAAALTARRRP-MPDWWQSAWQQAWST 810

Query: 839 TAMSC----------DSYSEVSV-SGKINCPKKDIIISGRIDQISISQQ---NIFIFEYK 884
                           + +E  +    +      + + GRID +  + +   ++++ +YK
Sbjct: 811 AMQLAVNISTVQGRTHAATEWKIGDTALPVEDDSLYVRGRIDLLLSTSEALQDVWLVDYK 870

Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           T H  P   + I      QL +Y   L+ 
Sbjct: 871 TGHRDPLTADDIAKGDGLQLGLYALALRA 899


>gi|313127496|ref|YP_004037766.1| ATP-dependent DNA helicase, rep family [Halogeometricum borinquense
           DSM 11551]
 gi|312293861|gb|ADQ68321.1| ATP-dependent DNA helicase, Rep family [Halogeometricum borinquense
           DSM 11551]
          Length = 616

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 68/195 (34%), Gaps = 35/195 (17%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   + + K  N ++ F D++                   +   +++++IDE QD + +Q
Sbjct: 190 VIRGWRKYKGDNGLVGFADMLERVRQ------------RSLVPNVDYLVIDEFQDITTLQ 237

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++V +                  +   GD+ Q +Y++ GA+P  +L  +R          
Sbjct: 238 YDVYQEWLPHLEG----------VLIAGDDDQVVYAWQGADPNLLLDAERD--------- 278

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                + LP S+R  + IL VV++     +  Q                +     + L  
Sbjct: 279 ---EDVVLPNSYRLPSRILDVVNEEIRHIDKRQEKDLHPRKEGGVVEG-VASPSMLDLAR 334

Query: 313 QVVSQHDSQCNPQQE 327
            V    +   + +  
Sbjct: 335 NVRYTIEEDEDDESI 349



 Score = 43.0 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 76/269 (28%), Gaps = 30/269 (11%)

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                 +              E I+K             +    L   A   +  D    
Sbjct: 370 GIPFSVLTDQRMWTDRLTEYVEAIEKLEREENINGLEARRLADMLQESAFGSNERD---- 425

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTI 561
                    +     G E +  L+  L+    +     +  +   +   ++  ++     
Sbjct: 426 --DLFDYIDELQEETGVEDLTDLEVELDVITDHAPFVPDGAAAGDMVRKVTSFQRKSVEA 483

Query: 562 KRAHSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
             A      + N VR+ T+H+AKG E+  VF+    ++    +    +        +   
Sbjct: 484 YFAGEYQGMDPNRVRVGTIHSAKGREADHVFVSTDLTEKVVEQMAASVDDEEVSGVEEFT 543

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
               P     +N                  R+ YVGM+RA ++L+I ++           
Sbjct: 544 TSTDPVPILTDN----------------ERRVFYVGMSRARERLVILENLIKGAPTLPVS 587

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKD 707
              ++ V D+   +   +         + 
Sbjct: 588 VLLHNEVRDTPVEELLEEAQTGDAPAPEP 616


>gi|39938801|ref|NP_950567.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39721910|dbj|BAD04400.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 1038

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 30/154 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           L   Y E      ++ F+ L+I T    + +++ +   + R         + IDE QD +
Sbjct: 185 LLNLYYEKLNYYNLITFDGLLIETSDFIEFVERNNGLIYNRP--------VFIDEFQDLN 236

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              + +I+ L           + P +L+  GD  Q+IYSF G+  + +    +       
Sbjct: 237 YFYYFIIKELL---------FNKPNSLYCFGDYTQNIYSFFGSSERILELFVKDF----- 282

Query: 250 NAGQKFSIIELPLSFRSTA-DILTVVDKVFSIPE 282
               K     L +++RS   +I+   +++    E
Sbjct: 283 ----KPEKHFLNVNYRSKGINIVKAANELIDNKE 312


>gi|39938841|ref|NP_950607.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39721950|dbj|BAD04440.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 1038

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 30/154 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           L   Y E      ++ F+ L+I T    + +++ +   + R         + IDE QD +
Sbjct: 185 LLNLYYEKLNYYNLITFDGLLIETSDFIEFVERNNGLIYNRP--------VFIDEFQDLN 236

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              + +I+ L           + P +L+  GD  Q+IYSF G+  + +    +       
Sbjct: 237 YFYYFIIKELL---------FNKPNSLYCFGDYTQNIYSFFGSSERILELFVKDF----- 282

Query: 250 NAGQKFSIIELPLSFRSTA-DILTVVDKVFSIPE 282
               K     L +++RS   +I+   +++    E
Sbjct: 283 ----KPEKHFLNVNYRSKGINIVKAANELIDNKE 312


>gi|39938537|ref|NP_950303.1| hypothetical protein PAM_051 [Onion yellows phytoplasma OY-M]
 gi|39721646|dbj|BAD04136.1| hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 425

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 30/154 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           L   Y E      ++ F+ L+I T    + +++ +   + R         + IDE QD +
Sbjct: 185 LLNLYYEKLNYYNLITFDGLLIETSDFIEFVERNNGLIYNRP--------VFIDEFQDLN 236

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              + +I+ L           + P +L+  GD  Q+IYSF G+  + +    +       
Sbjct: 237 YFYYFIIKELL---------FNKPNSLYCFGDYTQNIYSFFGSSERILELFVKDF----- 282

Query: 250 NAGQKFSIIELPLSFRSTA-DILTVVDKVFSIPE 282
               K     L +++RS   +I+   +++    E
Sbjct: 283 ----KPEKHFLNVNYRSKGINIVKAANELIDNKE 312


>gi|228473669|ref|ZP_04058419.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
 gi|228274883|gb|EEK13698.1| conserved hypothetical protein [Capnocytophaga gingivalis ATCC
           33624]
          Length = 911

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 64/559 (11%), Positives = 162/559 (28%), Gaps = 85/559 (15%)

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           + +     + L        + A  +  +S       +  L    F     ++     ++ 
Sbjct: 320 LPINITMGYPLQQTPVHDLISAYFKLYISGRWYHKEIKALLEQPF---LTNLLSENYKKD 376

Query: 462 ETETVYEYIQKFANCGISKF---QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
               + E+   +    I      +   + I+ L    +  S       ++      ++ +
Sbjct: 377 TITYINEHNFSYVYKKILDLYVKEEDRELINLLFDDEKDISVSKLIENVIKLLFFIKESL 436

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----------A 567
            +   E +  L+   NF     Q  Y  LQ+  + ++         +             
Sbjct: 437 EKSDKENVLNLEYIYNFYELFNQIHY--LQKKYNYIDSVKSLYYIYNDLLVKQKLSFRGE 494

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               ++IM V  A+ +    V +      +F   +     I   +  + G+P +      
Sbjct: 495 PLRGLQIMGVLEAQNIHFKNVLITSMNEGIFPKGNAVNSLIPFDVRANLGLPTYKESDYM 554

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
            +     +++H  ++                   L           ++S           
Sbjct: 555 YSYYFYRILQHTHRAIL-----------------LYNTDTDGLRGSERSRF--------- 588

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                + +   ++ + +   E    + +    E      E+ +          +K FSP 
Sbjct: 589 ---VLQLLSDYRIRSQVKFPEVKIIKQNQIEIEKDKNIIEKLVAIATKIDPKHRKGFSPS 645

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-------------- 793
                    ++          +   +    +  + G IIH++L+++              
Sbjct: 646 SLTTYVRNPIDFYQQQILDIRDEAEVEEIVEDRSLGTIIHRILELLYTPYVNSIISKKNI 705

Query: 794 FTLPEHKRKNFITSYCT-KNAKLWPAKEY---KNLLLSITRLLENPMMTTAMSCDSYSEV 849
             + +  R+     +   +       K     + +   + + L        +S +  + +
Sbjct: 706 DEIRKKVRETTEIVFKEYQQNDEISGKNIFVQQTIEEYVMKFLAIDE--KNVSENVVTLL 763

Query: 850 SVSGKINCPKK------DIIISGRIDQISISQQNIFIFEYKTH-------HHVPQEIEHI 896
           SV  KI    K       I  +G ID++     +I+I +YK+            +  E++
Sbjct: 764 SVEQKIQIDIKFDEFPFPICFNGTIDRVERRGNDIYIVDYKSGIVDREDVKLSDKGWENL 823

Query: 897 PYTHI----AQLSIYEKIL 911
              +      QL +Y  +L
Sbjct: 824 ILDYKYSKAFQLLMYAYLL 842


>gi|217031583|ref|ZP_03437088.1| hypothetical protein HPB128_21g141 [Helicobacter pylori B128]
 gi|298736699|ref|YP_003729229.1| hypothetical protein HPB8_1208 [Helicobacter pylori B8]
 gi|216946783|gb|EEC25379.1| hypothetical protein HPB128_21g141 [Helicobacter pylori B128]
 gi|298355893|emb|CBI66765.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 778

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/472 (11%), Positives = 128/472 (27%), Gaps = 82/472 (17%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
            ++K + +L       S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLETSGFDWSASPL----LDLENLTLALLEQQSSKEKAPLKEVHSQIMHQYHL 369

Query: 543 SYSSLQELIS----ELEQYPPTIKRA-HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              +LQ         L             ++  ++R+M     +G++   + +VD     
Sbjct: 370 LKDTLQNYNLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L K+ K+                
Sbjct: 430 VPSLKDCDLFLNSALRQSLNLPTLLDKKNLQKHYYYQLFKNSKE---------------- 473

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                I+  +  +   K SN      ++  + + +       L  +    ++   E    
Sbjct: 474 -----IVLSYIESETSKASN-----MLLELNLYIEPIKDAYTLFETSPLKDYQEEEIKAT 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P++                 +   L    +   +       S  D              
Sbjct: 524 IPKDFSF----------SASSLNAFLTCKRRFYYHYMKRFKESPKDENNS---------- 563

Query: 778 QTFNRGLIIHKLL-QVIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLE 833
                G ++H+LL +        +  +  +         + P +    L+    I     
Sbjct: 564 ---AVGSLLHELLKETYEKDKNPYALEERLIQLLETRENITPKERLDTLIALKKIQAFYI 620

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYK--TH---- 886
                          + +        + +   GRID+I  +    + + +YK  +     
Sbjct: 621 KE--KERFKAKIKI-LDLEKSFETTIQGVAFKGRIDRIDKTADNEVILLDYKFKSDLKLD 677

Query: 887 --------HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                      P EI  I   +  Q++IY   LK+    + +      + + 
Sbjct: 678 NMSKTQREGLSPIEIAQISTDY--QMTIYVFALKNLGYKEPIKAFFYDLRKG 727


>gi|291571373|dbj|BAI93645.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 879

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/600 (9%), Positives = 159/600 (26%), Gaps = 66/600 (11%)

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-FN 447
              L   +  +Y++ +    +  L +      +  L   I +     S   +L  PL   
Sbjct: 271 YAPLLLDMAWEYQLPLRLFYKIPLRNIRLGSWIALLIEVIENNFPFESTAKLLHHPLAQY 330

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            +     +   +R      ++ +    +            + +        +  D    +
Sbjct: 331 LTYQQWLEARQKRPHNLAEWQELGLNLS------------LLKFPESDTRQNWVDHIKQV 378

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL--QELISELEQYPPTIKRAH 565
                 R+         V     E     +   + +   L  QE   ++ +    +K   
Sbjct: 379 FKFFDIRKNSSQWSREIVAFN--ELEAAWVELSKPNGDRLNRQEFCQDILEIISKLKVPM 436

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                 + + T  + +G   P VFL+     +          +                 
Sbjct: 437 QPGKGGIEVHTPLSLQGASYPHVFLIGFQEGILPPAIENDPVL-------DFYESRRLSQ 489

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                  +  I    +    E  R+  + +T        C   +       +       +
Sbjct: 490 LGITLETAIDIAQRNELCFYELLRIPTISLT------FSCAEQHYKKPLIPSPYATRLGL 543

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             +      +  I+        +           +     + E  ++  +       +  
Sbjct: 544 EMTPPPLLNLASIEEARRYYLQQPEKLSNDVLVNDIIKNWQVEQRRESGESPDEYDGVIG 603

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLL-------------SDNQTFNRGLIIHKLLQV 792
              +  N   I + S +   G+   +                ++      G + H+ L++
Sbjct: 604 VGVDYEN--RIFSASQLLALGQCPFKWFATYLLGLKEPSEAEAEITGSLGGRLYHRCLEL 661

Query: 793 I-------FTLPEHKRKNFITSYCTKNAKLWPAKEY--------KNLLLSITRLLENPMM 837
           +         L   +R++   +     A L   +          +   L    +LE  + 
Sbjct: 662 LLTDIKNQTDLRRLERQDINEALSQAEAALKAEENVNFDKFMGWEARRLEGLNMLELNLQ 721

Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK-THHHVPQEIEHI 896
                  +   +S     N     + ++ R+D+I  +   + + +YK T        +  
Sbjct: 722 AEDFLRSNAEIISCENSFNAEWYGLKVTARVDRIDRTPTGLLVLDYKTTGSLPLGIKDDS 781

Query: 897 -PYTHIAQLSIYEKILKDSYPN-KSLVCLLIYVSEPKVFII---PQNKLNKAFAEISTKI 951
                  Q+ +Y++ +  ++   + +   L  + + +           L     E+  ++
Sbjct: 782 GQAKINIQMPLYQQAIAQNFKEVQQVDVKLYSLKKQRYLPAKVTDPAILEAFADEVKQRL 841


>gi|83953058|ref|ZP_00961780.1| hypothetical protein NAS141_12156 [Sulfitobacter sp. NAS-14.1]
 gi|83842026|gb|EAP81194.1| hypothetical protein NAS141_12156 [Sulfitobacter sp. NAS-14.1]
          Length = 987

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 74/715 (10%), Positives = 187/715 (26%), Gaps = 73/715 (10%)

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS-------TADIL 271
             D  Q++++  G +       +    +       +  + +L +S RS       T    
Sbjct: 234 CFDMPQAVWTDLGED-------QEKISQDHPQYRFRDLLRQLEMS-RSKIEAWTDTPPPS 285

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              + + S+      ++    T              + L +    + ++     +     
Sbjct: 286 AARNALVSLSLRPAPVTHVWLTEGPKLPDLHQATEGLTLIQAPTPRAEALAIALRLRQAV 345

Query: 332 YFDSLPQ-ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                    +   +L+R++   +      + +  +     +        +R   D  L  
Sbjct: 346 EDGKTAALITPDRMLSRQVTSALDRW---NILPDDSAGLPLHLSPPGRFLRHVGDLFLRK 402

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             +  L    K  +  +        L  + L    R       D                
Sbjct: 403 LDSEALLTLLKHPLTHSGGDRNFHQLNTQRLELQLRRDGLPYPDAE------------GV 450

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY-IHELIHIAQFCSPHDFFTLILG 509
             + +    R +     +    +    ++  +      + + + +    +  D       
Sbjct: 451 LKLARKTVSRSKDPAQMDVWADWVGTHLTDCELTGDRPLEDWVAL--HMALADAIADGAT 508

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
             +    +    G E   V+++         + S +   +L+  L Q      R   A H
Sbjct: 509 PSQPNGLWQHHAGEEAAKVMNDLAENAPYGGEMSAADYTDLVGALLQQGE--IRDRDAPH 566

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             V I     A+   + +V L       +         +   +    G+ +   +     
Sbjct: 567 PNVMIWGTLEARVQGADLVILGGLNDSTWPEAPPPDPWLNRQMRLKAGLLLPERRIGLSA 626

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
           +     I   +            V +TRA           +   +    R    +     
Sbjct: 627 HDYQQSIAAPE------------VCLTRAIR---------SDEAETVPSRWLNRLGNLLN 665

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
               +         I + +    +                  +     +      + IK 
Sbjct: 666 GLPAQGGDAAWKAMIKRGDHWLDQARALETVTRVPPAPRPSPRPPRAARPHALSVTEIKR 725

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
            I +PY +      +     L  L+       RG+I+H++++        +      S+ 
Sbjct: 726 LIRDPYAIYAKH--SLKLRALNPLVQSPDAPVRGIIVHEIMERFIKSVTAEPALLTKSHL 783

Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY------SEVSVS----GKINCPK 859
            + A+     E       +  L +   +      +        +  +      G    P 
Sbjct: 784 LETARTVLEAEAPWPAARVMWLTKIERIADWFIENELHRQSYSTPAAFEKAAKGSHEFPD 843

Query: 860 KDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
               + G  D+I  ++   I I++YKT        +        QL +   ++++
Sbjct: 844 LGFTLMGFADRIDRTEDGDILIYDYKTGTPPSVAEQKAFDK---QLLLEAAMVEE 895


>gi|171779649|ref|ZP_02920605.1| hypothetical protein STRINF_01486 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281751|gb|EDT47185.1| hypothetical protein STRINF_01486 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1080

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 85/774 (10%), Positives = 214/774 (27%), Gaps = 127/774 (16%)

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           ST ++                   +   + +       ++  +   +   +  D      
Sbjct: 232 STGNVYQASLDFLRSLAAKFQTQPEYVESSQKSQEAFAKLSKLFEAKHDFTTSDITLTHD 291

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
            +   + +D + Q+     +A+ I + +               +  + KDILVL+    D
Sbjct: 292 DKEHYAIWDVINQKEEVEHVAKAIRHKL--------------HQGYRYKDILVLL---GD 334

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                     + + Y+I         ++DH  +  + +L R    +      V +LK+ L
Sbjct: 335 VDSYRLQIGKIFDKYEIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRMEDVVNLLKTGL 394

Query: 446 FN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
           +  F++DD+          +   +           K +  + YI+ +           F 
Sbjct: 395 YGSFTQDDLDLFEQYLIYADIKGQSKFAKEFTIAYKGEEHLAYINGMREQIMAPLLTLFK 454

Query: 505 TLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYS------------------ 545
                     ++ ++      + + L+  +     NEQ  +                   
Sbjct: 455 AQKQLGSSLLEKLMTFLRAISLPENLERTVATFSENEQEKHEQVWRTFTGILEQFQTIFG 514

Query: 546 ----SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               SL E ++ L       +        + V + +    +   +  VF +      F  
Sbjct: 515 QEKLSLDEFLALLRSGMLAAQYRVVPASVDVVSVKSYDLVEPHTNKFVFALGMTQSHFPK 574

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
               +  I             + ++ + N     + +   K        L         +
Sbjct: 575 IAQNRSLISDEE------RAKVNETTADNQRFDVISRENIKKNHFAALSLFNSAT----E 624

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           +L++      +  +        ++         + +    T++ +   + A+        
Sbjct: 625 ELVLSLPQIANESEDKESSYLAELASFGVPVLVKGRNRLSTDAEDIGNYKAFLSRVIEVN 684

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSP----------------------------IKNDIN 752
              +E +  + +           +                                   +
Sbjct: 685 RLAIEEDRELSKEEQTFWSVAVRYLRKKLANEGVELPLIKDNMQTKPVSAEVIETHFPSD 744

Query: 753 EPYILNPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVI----FTLP 797
           EP  L+ S + T      +  L                 N G  +H++ +++        
Sbjct: 745 EPINLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDASDQA 804

Query: 798 EHKRKNFITS-----------YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY 846
              + N               Y       +     +++  S   +L           +  
Sbjct: 805 FDDKLNRAIQTTNAEDAFKFVYEEDEESRYSLTVLEDIARSTATILRQD--AQIQVENE- 861

Query: 847 SEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
            E      +      + I G ID++   S  ++ + +YK+ H+   +I+        QL 
Sbjct: 862 -EEPFELMLANA---VRIRGIIDRVDRLSDGSLGVVDYKSSHNTF-DIQKFYNGLNPQLV 916

Query: 906 IYEKILKDSYPNKSLV--------CLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            Y + L+    +K +          + +++ EPKV +       K    +S ++
Sbjct: 917 TYMQALR----DKKIKSESDKIFGAMYLHMQEPKVDLSSVATTEKILENLSKEL 966


>gi|110667327|ref|YP_657138.1| DNA helicase II [Haloquadratum walsbyi DSM 16790]
 gi|109625074|emb|CAJ51492.1| DNA helicase II [Haloquadratum walsbyi DSM 16790]
          Length = 618

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 34/164 (20%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   +   K  + ++ F D++                   +  ++++++IDE QD +
Sbjct: 187 VPEVIQAWRAYKGDHGLVGFADMLERVKQ------------RSLVPQVDYLVIDEFQDIT 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q++V               SS   +   GD+ Q +Y++ GA+P  +L   R       
Sbjct: 235 TLQYDVYEKW----------RSSVDRVLIAGDDDQVVYAWQGADPNLLLDANRD------ 278

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                   + LP S+R  + +L+VV++     +  Q        
Sbjct: 279 ------EDVVLPNSYRLPSKVLSVVNQEIRHIDKRQEKDLHPRK 316


>gi|322380356|ref|ZP_08054564.1| exonuclease [Helicobacter suis HS5]
 gi|321147226|gb|EFX41918.1| exonuclease [Helicobacter suis HS5]
          Length = 769

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/417 (12%), Positives = 117/417 (28%), Gaps = 75/417 (17%)

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           EL       +R    +  +VR++ V   +GL    V L+D    +        + +  + 
Sbjct: 383 ELYLQELKKQRIDDVSGGKVRVLDVLECRGLSFERVVLLDFTDHLVPCIPDHNLFLNSTT 442

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                IP        + +    ++++ K+          YV       ++++        
Sbjct: 443 RARLNIPTLKDHENLQKHYYYQILQNTKQVNIA-----YYVDDKTTHSKMLL-------E 490

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
              + Q +  +       N       +    + +                          
Sbjct: 491 LDLNTQISPANFALFPPENKHDYLDEECKGKVLEGF------------------------ 526

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-- 790
                K    L  P +  +     L P + D                   G  +HKLL  
Sbjct: 527 SFSATKFNDYLTCPRRFYLKYIKNLTPPSKDQFNM---------------GTFLHKLLKK 571

Query: 791 ---QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
              +        K  + +     +        E++  +  ++   E       +      
Sbjct: 572 HYEEH--KNTPVKASDLLELAQDEQLNALQRLEFEVAVDKMSAFFEKE--KEILQS---R 624

Query: 848 EVSV-SGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKT---HHHVPQEIEHIPYTHIA 902
           EV V   K          +G+ID+I      +  I +YK           +E++  +   
Sbjct: 625 EVLVCEKKFKTSIAGFTFNGKIDRIDRLEDGSYAILDYKYKSKDKLKVDTLENMEESQDY 684

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI-------IPQNKLNKAFAEISTKIP 952
           QLSIY   L  S  +  +      + + ++           Q +L     ++++ +P
Sbjct: 685 QLSIYHLALASSLQDARIRVYFYDLKKGELLEEYLQVVHFKQEQLQNQLKKLTSIMP 741


>gi|170760102|ref|YP_001785766.1| ATP-dependent nuclease subunit B [Clostridium botulinum A3 str.
           Loch Maree]
 gi|251764551|sp|B1KUY8|ADDB_CLOBM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|169407091|gb|ACA55502.1| ATP-dependent nuclease subunit B [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 1147

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 70/682 (10%), Positives = 184/682 (26%), Gaps = 140/682 (20%)

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
           + +  + KDI V+     D      +   +   Y I    + +  + ++  I  +++   
Sbjct: 332 RDKGCRFKDIAVIT---GDLEGYENIISSVFLQYNIPFFIDKKREINNNPIIVLILSALE 388

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANCGISKF-- 481
            +       S    LK+ L + + ++   +             +   + + +   S +  
Sbjct: 389 VLSKNWTYESVFRYLKTGLLDINNEEMDILENYVLANGIKGYQWTNDKPWEHKSFSNYEL 448

Query: 482 -----QHVIKYIHELIHIAQFCSPH---------------DFFTLILGAKKGRQQFISRF 521
                + ++  I+++ + A                     +     L +     +  +  
Sbjct: 449 EDQVEKELLAKINDIRYKAMEPIISLNKNLKNKERAKEFCEVLYEFLCSINLPDKIQNMI 508

Query: 522 GNEVID--------------VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
            +   +              ++ E L+  +        SL+E    L+      +     
Sbjct: 509 EDFRAEGEVEKASEYNQIWNIVMEVLDQIVEAIGGEKISLKEFFKILQTGFSEYEIGLIP 568

Query: 568 NH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
              ++V + ++   +     ++++V     +F            +   + GI     +  
Sbjct: 569 PTLDQVIVGSITRLRSHNINILYIVGVNDGIFP-----------APLKEEGILSDDDRQF 617

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
             +  +         +   E   L+Y  +T  S  L +         K          + 
Sbjct: 618 LGDKGLEIAKDTKSIA--FEEQFLVYSTLTTPSKYLRLSYPIADGEGKTLRPSIIISRIK 675

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--EQKIPKKLF 744
             F N      I   N   ++                  R++     +D     I K  F
Sbjct: 676 KIFTNICEENDIVKLNGEEEELKNISSAKPTFNYLISNLRKDIEGVKIDNIWGDIYKWYF 735

Query: 745 SP---------------------------IKNDINEPYILNPSTIDTKGKTNLESLLS-D 776
                                        I+N   +P  ++ S ++   +      +   
Sbjct: 736 ENEFWIEKLNRLVKGFDYTNQSKYIETKKIRNLYGKPLKISVSRVEKFSQCPFAYFVQYG 795

Query: 777 NQTFNR----------GLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKN 823
            +  +R          G+ +H +L+      E           ++  +       +E  N
Sbjct: 796 LKAKDRKIFNLSYPDLGIFMHSILEKFSHELEKKGIDWDTMDLNWAEEEIDKLINEELDN 855

Query: 824 --------------LLLSITRLLENPMMTTAMSCDSYS----EVSVSGKINCPKK----- 860
                         +  S+ ++L+  +    +                  +         
Sbjct: 856 KSLDILNSSKRYEYVTKSVKKILKRSI--WLIGEHIKRGNFKPSYYELSFDIDGDYPPIA 913

Query: 861 -----DIIIS--GRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                  +++  GR+D++         +  I +YK+      ++  + Y    QL IY  
Sbjct: 914 MELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSG-TKEFKLSDVYYGLQLQLLIYLD 972

Query: 910 I----LKDSYPNKSLVCLLIYV 927
                L + +        L+Y+
Sbjct: 973 AILTELAERFGIDGEPGALLYL 994


>gi|218550117|ref|YP_002383908.1| helicase [Escherichia fergusonii ATCC 35469]
 gi|218357658|emb|CAQ90299.1| putative helicase [Escherichia fergusonii ATCC 35469]
          Length = 594

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 22/172 (12%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
             +   +   Y+  K  + ++  +D +    ++        +    + +    I+IDE Q
Sbjct: 181 WQIKDLIETKYKLFK--SGLMTHDDSLFLAAEIFINEKYKNYALL-LSKRFPLIIIDECQ 237

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D S   +E +  L       +  H     L  VGD +QSIY F   +PK  ++       
Sbjct: 238 DLS---YEHLFIL-------QGLHDLGVKLHFVGDLEQSIYGFRAVDPKDTIKFITD--- 284

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                  +F  + L +++RS   I+ +  K+ +        S   +  I  +
Sbjct: 285 ------NEFERMPLKINYRSCQQIIDLCSKLTAHDGVNGQFSSIESPCIVLQ 330


>gi|57234561|ref|YP_181362.1| hypothetical protein DET0620 [Dehalococcoides ethenogenes 195]
 gi|57225009|gb|AAW40066.1| conserved domain protein [Dehalococcoides ethenogenes 195]
          Length = 379

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 70/200 (35%), Gaps = 25/200 (12%)

Query: 755 YILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFTL---PEHKRKN 803
             L+ S ID      L+                F+ G  +H   +  F +   P    +N
Sbjct: 2   RPLSYSQIDQYQSCPLKYRFLYIDGLKPPAKGYFSFGTTLHDCAEYFFRVKVPPPPSLEN 61

Query: 804 FITSYCT--KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
            +  YC   ++     A+  +N      ++L +       S D +  ++V  +       
Sbjct: 62  LMEYYCLHWRSEGYESAEAEENYRQLGGKILAD--FHRIHSADFHMPLAVEHQYTVNLDG 119

Query: 862 IIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI---AQLSIYEKILKDSYPN 917
           + ++G+ID++       + I +YK++       +     ++    QLS+Y+  ++  +  
Sbjct: 120 VKLTGKIDRVDKLPSGELCIIDYKSNK------DLFSAEYVQNNLQLSLYQLAVEQIWFL 173

Query: 918 KSLVCLLIYVSEPKVFIIPQ 937
                 L ++        P 
Sbjct: 174 PVGELCLYHLRSNTAMRCPA 193


>gi|307637050|gb|ADN79500.1| hypothetical protein hp908_0371 [Helicobacter pylori 908]
 gi|325995642|gb|ADZ51047.1| hypothetical protein hp2018_0364 [Helicobacter pylori 2018]
 gi|325997238|gb|ADZ49446.1| hypothetical protein hp2017_0362 [Helicobacter pylori 2017]
          Length = 778

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/474 (11%), Positives = 136/474 (28%), Gaps = 86/474 (18%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--- 539
            ++K + +L       S        L  +      + +  ++    L E  +  +     
Sbjct: 314 ELVKILEDLQTSDCDLSGSAL----LDLENITLALLEQQSSKEKAPLKEAHSQIMHQYHL 369

Query: 540 --EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
             +     SL++L+    Q      R   ++  ++R+M     +G++   + + D     
Sbjct: 370 LKDTLKNYSLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVVADFNETC 429

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
                   + +  +L     +P  + +   + +    L K+ K+        L Y+    
Sbjct: 430 VPSLKDCDLFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSKEVA------LSYI---- 479

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
                           +    +    ++    H +       L  +    ++   E    
Sbjct: 480 ----------------ESETLKASNMLLELDLHIEPIKDAYTLFETSPLKDYQEEEIKAA 523

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
            P+N       +   L       ++ +                          +    D 
Sbjct: 524 IPKNFSF----SASSLNAFLTCKRRFYYHY-------------------MKRFKETPKDE 560

Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
                G ++H+LL        +++     +   +  +L   +E   L   +  L+    +
Sbjct: 561 SNSAVGSLLHELL-----KEAYEKDKTPHALEERLIQLLETRENVTLKERLDTLVALKKI 615

Query: 838 TTA-MSCDSY--SEV---SVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT----- 885
               +       +E+    +        + +I  G ID+I  +    I + +YK      
Sbjct: 616 QAFYLKEKERFNAEITILDLEKSFETIIQGVIFKGHIDRIDKTTDNKIILLDYKFKSDLK 675

Query: 886 ---------HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                        P EI  I   +  Q++IY   LK+    + +      + + 
Sbjct: 676 LDNMSKTQRGGLSPIEIAQISTDY--QMAIYAFALKNLGYKEPIKAFFYDLRKG 727


>gi|322378445|ref|ZP_08052898.1| exonuclease [Helicobacter suis HS1]
 gi|321149136|gb|EFX43583.1| exonuclease [Helicobacter suis HS1]
          Length = 769

 Score = 77.3 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/417 (12%), Positives = 117/417 (28%), Gaps = 75/417 (17%)

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           EL       +R    +  +VR++ V   +GL    V L+D    +        + +  + 
Sbjct: 383 ELYLQELKKQRIDDVSGGKVRVLDVLECRGLSFERVVLLDFTDHLVPCIPDHNLFLNSTT 442

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                IP        + +    ++++ K+          YV       ++++        
Sbjct: 443 RARLNIPTLKDHENLQKHYYYQILQNTKQVDIA-----YYVDDKTTHSKMLL-------E 490

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
              + Q +  +       N       +    + +                          
Sbjct: 491 LDLNTQISPANFALFPPENKHDYLDEECKGKVLEGF------------------------ 526

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-- 790
                K    L  P +  +     L P + D                   G  +HKLL  
Sbjct: 527 SFSATKFNDYLTCPRRFYLKYIKNLTPPSKDQFNM---------------GTFLHKLLKK 571

Query: 791 ---QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
              +        K  + +     +        E++  +  ++   E       +      
Sbjct: 572 HYEEH--KNTPVKASDLLELAQDEQLNALQRLEFEVAVDKMSAFFEKE--KEILQS---R 624

Query: 848 EVSV-SGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKT---HHHVPQEIEHIPYTHIA 902
           EV V   K          +G+ID+I      +  I +YK           +E++  +   
Sbjct: 625 EVLVCEKKFKTSIAGFTFNGKIDRIDRLEDGSYAILDYKYKSKDKLKVDTLENMEESQDY 684

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI-------IPQNKLNKAFAEISTKIP 952
           QLSIY   L  S  +  +      + + ++           Q +L     ++++ +P
Sbjct: 685 QLSIYHLALASSLQDARIRVYFYDLKKGELLEEYLQVVHFKQEQLQNQLKKLTSIMP 741


>gi|307243598|ref|ZP_07525743.1| putative ATP-dependent nuclease subunit B [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493039|gb|EFM65047.1| putative ATP-dependent nuclease subunit B [Peptostreptococcus
           stomatis DSM 17678]
          Length = 1138

 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 111/919 (12%), Positives = 261/919 (28%), Gaps = 183/919 (19%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEF------IKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           K++ T ++ + S  L + +K +  E       ++  +         +  A L     + +
Sbjct: 106 KDLKTLKMPQDSTGLVDIVKDALIELKQNKIGLEELEEMALRTDDHALKAKLEDIGLIYS 165

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            YE+  ++   +D ED I     LL K      + +  +     I IDE    + +Q+++
Sbjct: 166 SYEKLMEE-DYIDTEDWI----QLLSK-----KLAFYEEIREATIFIDEFTGFTPVQYDL 215

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           I  L                         + Y     + K  L  K +  K         
Sbjct: 216 IEDLIALSK--------------------NTYISLLLDLKSRLEVKTVFSK--------T 247

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
            +  L               K+  I    +    +    +         +  ++    + 
Sbjct: 248 HVTYL---------------KLIEICNRHKLKRLEDIEVVSQGYYSSPDLAYLEKNINLY 292

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                Q   +      + +   +          +A  I  ++           +  + ++
Sbjct: 293 RAKPFQGEVENIDLIEFENIYKE-------VEYVAGKIVELVND---------KGYRYRE 336

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
           I V  R   D     +L R +  DYK++   + +     +  +  L ++           
Sbjct: 337 ITVATR---DLDSYAYLVRAIFRDYKLNYFLDQKLEAKTNPILVLLTSILNMKKENYSYN 393

Query: 436 SFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANCGI-------------- 478
           S    LKS L     +D   +           + +                         
Sbjct: 394 SVFNYLKSGLVGIDHEDVSLLENYVIANGIRGSEWFKDWDRPLIHNIEDDSEPDNTHIND 453

Query: 479 ---------SKFQHVIKYIHELIHIAQFCSPHDF-------FTLILGAKKGRQ-QFISRF 521
                     K    +K  + L  I+                  ++   KG++  + ++ 
Sbjct: 454 IRKRVVEPIEKLHDQLKGKNSLRDISAHLYQFALDIGLPERINDLIEEFKGQENHYKAKE 513

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTA 580
            ++V ++  + L+  +    +    L+  I  +E             ++++V + +V   
Sbjct: 514 YSQVWNIFVDVLDEMVEFLGDEKIGLERYIRLMEAELSGFELGIIPPSNDQVFVTSVDRM 573

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           K  ++ V+ L+     VF      +  I     +  G       S  ++           
Sbjct: 574 KNPDTKVLILMGVNEGVFPKTIGDQTLISDREKEKLGQMGISFDSDVKSKTY-------- 625

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
                +   L+Y  M  A  +LII    +          +    +   F        +K+
Sbjct: 626 -----DEVFLIYRAMGIARKRLIITHPVSNFKGDTMKMSSLIKKIMKIF------PGLKM 674

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
            N ++ D   ++ +          + +  I+  ++       L       +    + + S
Sbjct: 675 ENFLDSDLDTSHIYDQLVSLEEKKKVDNMIESSLNYDNRVSNLNVDQARILYGKGVFSVS 734

Query: 761 TIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLL-QVIFTLPEHK--RKNFIT 806
            ++                  E  +++    + G+  HK+L +   +L +     K+   
Sbjct: 735 KLEKYAACPFSYFMNYGLAAKERPINEFSPMDSGIYSHKILDEFSKSLAKIDLSWKDIDK 794

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS------------------- 847
            Y   +         K+    I     +       S  + S                   
Sbjct: 795 GYIGMSVDQISQDLVKSRTGYILD--SSEKYRYLYSRLNRSLVDSIDNMSKQVKKGDFQP 852

Query: 848 ---EVSV-----SGKINCPKKD---IIISGRIDQI--SISQQN--IFIFEYKTHHHVPQE 892
              E+S         +N        + I G+ID++   I  +   + + +YK+      +
Sbjct: 853 SGFELSFGFNSAYPPLNLDLDGSRKVNIIGKIDRLDTCIDGEREFVRVIDYKSS-GKEID 911

Query: 893 IEHIPYTHIAQLSIYEKIL 911
           +  +      QL +Y   +
Sbjct: 912 LTSLYGGLQLQLFMYMNAV 930


>gi|254384596|ref|ZP_04999935.1| hypothetical protein SSAG_04320 [Streptomyces sp. Mg1]
 gi|194343480|gb|EDX24446.1| hypothetical protein SSAG_04320 [Streptomyces sp. Mg1]
          Length = 262

 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/264 (9%), Positives = 64/264 (24%), Gaps = 19/264 (7%)

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
              + R +             +  E +         + +    +L   + + + +  P  
Sbjct: 2   CPAEPRFRDGTGPGRAPSPRGLTPEEARAVASWD-RDLDALEGELRRARAVVRDVPLPSA 60

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
              ++   L                        +G   H  ++  F        + +   
Sbjct: 61  LSASQLLRLAADEQAFARDLARPMPQPPQPAARQGTRFHAWVESRFDELPLPLLDVLDPE 120

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI 868
                      +  +L  S+    E             +   +   +       +I GRI
Sbjct: 121 TELPGGDQEIADEADL-DSLKAAFERSDYAE------RTPHRMEVPVQLTLAGRVIRGRI 173

Query: 869 DQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLI 925
           D +  +      I ++KT      +          QL++Y     ++   P   +    +
Sbjct: 174 DAVYANPDGTFEIVDWKTGRSTDADP--------LQLAVYRLAWSETTGTPLTHITAAFL 225

Query: 926 YVSEPKVFIIPQNKLNKAFAEIST 949
           +V   +V              I  
Sbjct: 226 HVRSGRVIRPRNLPGRARLERILQ 249


>gi|169347068|ref|ZP_02866010.1| DNA helicase II [Clostridium perfringens C str. JGS1495]
 gi|169296751|gb|EDS78880.1| DNA helicase II [Clostridium perfringens C str. JGS1495]
          Length = 495

 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 59/176 (33%), Gaps = 28/176 (15%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           + A YE+ KK               ++L   ++S   R  I  + + I IDE QD     
Sbjct: 126 ILASYEDNKKNFKF-------ELALNIL---ELSKVARQYIKAKYSRIFIDEYQDCDKDM 175

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +   +                LF VGD KQSIYS+ GA PK                 
Sbjct: 176 HNLFMYI----------KELGVKLFIVGDTKQSIYSWRGANPKLFEEIY--------IGD 217

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
             F   EL ++FR +  I    + +     +    + +    +   S+       V
Sbjct: 218 NDFKKYELFINFRCSKGIQNYSNIIQYRNIDKYQDNNEDIDDVILLSNNYDINDAV 273


>gi|323701382|ref|ZP_08113056.1| ATP-dependent nuclease subunit B [Desulfotomaculum nigrificans DSM
           574]
 gi|323533641|gb|EGB23506.1| ATP-dependent nuclease subunit B [Desulfotomaculum nigrificans DSM
           574]
          Length = 1161

 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 80/727 (11%), Positives = 197/727 (27%), Gaps = 136/727 (18%)

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           ++ +    +        + + +  + ++  +    +   Q     ++A            
Sbjct: 274 ATFLSMPESADRVPPRFAHNPAVAHLERNYFQRPGEVCQQADGIKLVACANRRAEVEAAA 333

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            + I        ++ +DI+V++R   D    + L   +  D+ I V  + +  +  H  +
Sbjct: 334 REIIGLCRDH-GLRWRDIVVMLR---DLDNYSHLISTVFQDHGIPVFIDQKRSVLHHPLV 389

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT---------QRHETETVYEY 469
             + +    ++ Q         LK+ L     DD+ K+            R      + Y
Sbjct: 390 DLMRSALEVVIQQWAYDPVFRYLKTDLVPVLRDDVDKLENYVLAHGIRGSRWTDGRDWTY 449

Query: 470 IQKFANCGISKF--------------------------------QHVIKYIHELIHIAQF 497
            + +      +                                 Q+V      L  +   
Sbjct: 450 RKHYTLEQEDRLYQQETGELNAINQVRYQAVSHLKSFADSVARAQNVRDITTALFELLAS 509

Query: 498 CSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
                         + R + I +R   ++ + +   L+  +    +   +L+E    LE 
Sbjct: 510 LDVPGRLERWAREAEERSRLIEAREHAQLWNNVLMLLDEIVEALGDEKLTLEEYAQVLEA 569

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              +++        ++V + T+  ++        ++     V   +  +         D 
Sbjct: 570 GLESLRLGIIPPGLDQVVVGTLERSRNPNVKAALVLGISDGVLPARPGEDGLFS----DF 625

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               +                    +    +   L+YV +TRASD L +         K 
Sbjct: 626 ERELLKQQGITLAPGA---------RRKLFDEQYLIYVALTRASDFLWLSYPQADDEGKA 676

Query: 676 SNQRTWYDMVYD--SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
                    V +      ++ ++          D   + + S  +      E +      
Sbjct: 677 LVTSQVIARVKELLPNLREQVIQVEPPDPGREIDFIASRDRSLSYLAAMLREVKAGRPVD 736

Query: 734 MDEQKIPKKLFSPIKNDINEPYIL---------------------------NPSTIDTKG 766
              Q +        +       +L                           + S ++   
Sbjct: 737 PMWQDVYTWFARQPELRGQCRRVLAGLEHVNQEAPLPSGIGRKLYGSKLRASVSRLEKFT 796

Query: 767 KTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI---------- 805
                          E         + G   H  L++     + + +++           
Sbjct: 797 SCPFAHFLSHGLRLQERDTFKLAAPDLGQFFHAALKLFTHRLQEQGRDWAALTRTEAVTM 856

Query: 806 -------TSYCTKNAKLWPAKEYKNLLLSITRLLENP--MMTTAMSCDSYSEVSVSGKIN 856
                   +   +N  L  +  ++ L+  + R++E     +T      S+  V++     
Sbjct: 857 AGEIVNELAPRLQNEILLSSARHRYLINKLRRIVERAVLTLTEHARRGSFRPVALEIGFG 916

Query: 857 CPKK------------DIIISGRIDQI---SISQQNIF-IFEYKTHHHVPQEIEHIPYTH 900
            P +             + + GRID+I       Q    I +YK+      ++  I +  
Sbjct: 917 VPGELPPVTFDLAGGGSMELVGRIDRIDAACEGGQQYLNIIDYKSG-ETELKLADIYHGL 975

Query: 901 IAQLSIY 907
             QL  Y
Sbjct: 976 RLQLLTY 982


>gi|209523273|ref|ZP_03271829.1| ATP-dependent nuclease subunit B-like protein [Arthrospira maxima
           CS-328]
 gi|209496424|gb|EDZ96723.1| ATP-dependent nuclease subunit B-like protein [Arthrospira maxima
           CS-328]
          Length = 883

 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 60/604 (9%), Positives = 163/604 (26%), Gaps = 85/604 (14%)

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-FN 447
              L   +  +Y++ +    +  L +      +  L   I +     S   +L  PL   
Sbjct: 275 YAPLLLDIAWEYQLPLRLFYKIPLRNIRLGYWIALLIEVIENNFPFESTAKLLHHPLARY 334

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            +     +   +R      +E +    +            + +        +  D    +
Sbjct: 335 LTYKQWLEARQKRPNNLAEWEELGLNLS------------LLKFPQSDTLPNWVDRIKQV 382

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL--QELISELEQYPPTIKRAH 565
           L     R+         V     +     L   +     L  QE   ++ +    +K   
Sbjct: 383 LKFFDIRKNSSQWSREIVAFN--QLETAWLELSKLDGDRLNRQEFFQDILEIITKLKVPM 440

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                 + + T  + +G   P VFL+     +          +                 
Sbjct: 441 QPGKGGIEVHTPLSLQGASYPHVFLIGFQEGILPAAIENDPVL-------DFYESRRLSQ 493

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            +     +  I    +    E  R+              C   +       +  +    +
Sbjct: 494 FNITLETAIDIAQRNELCFYELLRI------PTKSLTFSCAEQHHKKPLLPSPYSTRLGI 547

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             +      +  I+        +           +     + E  ++  +       +  
Sbjct: 548 ETTPPPLLNLASIEEARRYYLQQPYQLSNDVIVNDIIKNWQVEQRRESGESPDEYDGVIG 607

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLL-------------SDNQTFNRGLIIHKLLQV 792
              +  N   I + S +   G+   +                ++     RG + H+ L++
Sbjct: 608 IGVDYQN--RIFSASQLTALGQCPFKWFATYLLCLKEPSEAEAEITGSLRGRLYHRCLEI 665

Query: 793 IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYS-- 847
           +  L + K +  +             ++    L      L+          +  ++    
Sbjct: 666 L--LKDIKTQTDLRR--------LDIQDINQALSQAEAALQAEENVNFDKFIGWEARRLE 715

Query: 848 -----EVSVSGK---------------INCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
                E+++  +                +     + +  R+D+I  +   + + +YKT  
Sbjct: 716 GLNMLELNLQAEDFLLANAEIISRENYFDAEWYGLKVIARVDRIDRTPTGLLVLDYKTTS 775

Query: 888 HVPQEIEHI--PYTHIAQLSIYEKILKDSYPNKS-LVCLLIYVSEPKVF--IIPQNKLNK 942
             P  I+          Q+ +Y++ +  ++     +   L  +++ +     + +  + +
Sbjct: 776 SSPLGIKDDSGKAKINIQMPLYQQAIAQNFNEVPEVDVKLYSLNKQRYLKAKLTEPAILE 835

Query: 943 AFAE 946
           AFAE
Sbjct: 836 AFAE 839


>gi|320322832|gb|EFW78924.1| UvrD/REP helicase family protein [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 542

 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 68/449 (15%), Positives = 140/449 (31%), Gaps = 84/449 (18%)

Query: 2   KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
           +    +S                                     + +  Q L +  + + 
Sbjct: 66  RRILAISFKRDAASNLAARVRKRCHSSHASRFDSMTFDAFAKGLLDRFGQALPEFWRPRP 125

Query: 62  IEE---RFSLLSSFFLTQ-KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTY 117
             E    +      FL     +P  +I T+   +          KS +    +       
Sbjct: 126 GYEITTYYERDYRNFLDLIAGSPPGDIGTKASLRAIGA------KSFERKHLLGAPLPVA 179

Query: 118 KMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
              K  +A   +A+    HY   + K  VL F  +I    +LL +  ++  +R  +    
Sbjct: 180 AWPKPDVAQWAMAR--FWHYSLHEGKKSVLTFP-MIGRLVELLLR--INPMVRDALRLTY 234

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
           +H+ +DE QDT+ +Q++++ ++            +   + AVGD KQ I  +  A     
Sbjct: 235 SHLFMDEFQDTTQVQYDLVHTIF---------CGTDTVVTAVGDNKQQIMRWALAMDDPF 285

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
                                 L  ++RS+ D++                       I+H
Sbjct: 286 SEFDADFGGL---------RTTLFNNYRSSPDLVR----------------------IQH 314

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMI 357
             ++    G ++   Q     D +            D    ++ A  LA+ I+  I++  
Sbjct: 315 VLAQALDSGAMEPISQTEGTIDGES-------CVILDFPSPKTEARHLAKTISAAIAD-- 365

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV---GNDRFILTD 414
                      + +  +D +VLVR++        + R       +S+    G    I+  
Sbjct: 366 -----------KKLLPRDFVVLVRQKAG--DYADVLRPAFEAEGLSLRNEAGTAGQIMLQ 412

Query: 415 HLAIKD----LMALGRFILSQEDDLSFVC 439
            L  +D    L++L R  ++      +  
Sbjct: 413 ELMTEDLSKHLVSLLRLAMNPRAGRHWSN 441


>gi|47092375|ref|ZP_00230165.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 4b
            H7858]
 gi|226224876|ref|YP_002758983.1| ATP-dependent deoxyribonuclease (subunit B) [Listeria monocytogenes
            Clip81459]
 gi|47019152|gb|EAL09895.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 4b
            H7858]
 gi|225877338|emb|CAS06052.1| Putative ATP-dependent deoxyribonuclease (subunit B) [Listeria
            monocytogenes serotype 4b str. CLIP 80459]
 gi|328465846|gb|EGF37034.1| ATP-dependent helicase/deoxyribonuclease subunit B [Listeria
            monocytogenes 1816]
          Length = 1157

 Score = 76.9 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 78/748 (10%), Positives = 202/748 (27%), Gaps = 169/748 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       +A  I  +               + +D+ +L R   D  ++        
Sbjct: 307  QANNRRAEIEGVAREIRQLTLNG----------YRYQDMAILTRNLGDYDVLCETVME-- 354

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I +  + +  ++ H  I+ + +    IL + + +  F  +     F  +E      
Sbjct: 355  -SYNIPIFIDKKRAMSKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLR 413

Query: 453  --------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIK---YIHELIHIA 495
                          I        E + +Y  I+  +   + +    I+    I+E+  + 
Sbjct: 414  RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLI 473

Query: 496  -------------------QFCSPHDFFTLI------------LGAKKGRQQFISRFGNE 524
                                  + + F   +               +   +  ++R   +
Sbjct: 474  VNPLSTLELNLKKAKTGMEFALALYHFLEQVNAVERLESWRQRAEEQGYLE--LAREHEQ 531

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGL 583
                +   L+  +         L   +  +              + ++V +  +  AK L
Sbjct: 532  AWSAISALLDEFVEVLGEETLDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLL 591

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            +  V+F +     V   +      +     D     +   +  ++NNI            
Sbjct: 592  DMKVIFAIGMNDGVMPLRQKDNGILSDQDRDALRAEVSNLKPSAKNNIG----------- 640

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
              E + L Y  ++  SD+L +   +     K  ++  +   +   F        +     
Sbjct: 641  --EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFKKLSESVYLTDPGL 698

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY-------- 755
            ++  E  +Y  S          + +  K+      +    ++    +  E          
Sbjct: 699  LSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPLSSVWWDAYNSYFENGKESRMAKQVLSS 758

Query: 756  -----------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFN 781
                                     + S ++                  E      Q  +
Sbjct: 759  LYYENKTKPLQEKTAKNLFGETIHASVSRMEKFFSCEFQHFAQYGLKLEERGHFQLQAVD 818

Query: 782  RGLIIHKLLQVIFT------------LPEHKRKNFITS--YCT---KNAKLWPAKEYKNL 824
             G I H  ++ I                +  R+    +  +     ++  L  +K  + +
Sbjct: 819  MGEIFHGAMEWISAELKRNNLDWGSLTDQECRQMAKLAMTFLAPKIQHEILLSSKRMEYI 878

Query: 825  LLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
               + +++     ++       ++  V +                     ++++ GRID+
Sbjct: 879  QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKISLQANSELLLQGRIDR 938

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL 923
            I  +  +    + I +YK+  H    +  + Y    Q+  Y  I+         K+    
Sbjct: 939  IDMAEQEDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPA 997

Query: 924  --LIYVSEPKVF----IIPQNKLNKAFA 945
              L +    +       +    + K   
Sbjct: 998  GVLYFHMHNQYVQAEKELSDEAIAKELQ 1025


>gi|228991627|ref|ZP_04151569.1| UvrD/Rep helicase [Bacillus pseudomycoides DSM 12442]
 gi|228768106|gb|EEM16727.1| UvrD/Rep helicase [Bacillus pseudomycoides DSM 12442]
          Length = 698

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  +++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQIYILKEIT-----------MGNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   ++V    E   GL+
Sbjct: 507 --IEDWNDFKEVFQETGY--------YELTRSYRSTKEIIEFANEVIKNAEIPVGLA 553


>gi|229110262|ref|ZP_04239836.1| UvrD/Rep helicase [Bacillus cereus Rock1-15]
 gi|228673248|gb|EEL28518.1| UvrD/Rep helicase [Bacillus cereus Rock1-15]
          Length = 691

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 107/322 (33%), Gaps = 57/322 (17%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           + W      V DI K++ +  E  +  + K+ + L    +           L  F  T +
Sbjct: 329 EAWDRAIIPVEDIKKWMQV--EYKHYPLQKRRERLVGRMK-----RWIEIELKKFGETNE 381

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K   T+ +N               +   +    +  K  +   A     + L    
Sbjct: 382 KKLLKKEATKRLNAYMK--------FWPKMSALSLYSSIVKSKEILEALP---EELVKET 430

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLIQ 192
           E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  Q
Sbjct: 431 EKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQ 478

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             V++ +T              +   +GD  Q+IY + G   +     K + Q+      
Sbjct: 479 VYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY--- 522

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 EL  S+RST +I+   +++    E   GL+     +         +    ++ +
Sbjct: 523 -----YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGEDVKVIHAENQFTEIVK 577

Query: 313 QVVSQHDSQCNPQQESWTSYFD 334
            V    ++          +  +
Sbjct: 578 TVKHLQNADVKTIAVIGRTEDE 599


>gi|49474857|ref|YP_032898.1| hypothetical protein BH00280 [Bartonella henselae str. Houston-1]
 gi|49237662|emb|CAF26844.1| hypothetical protein BH00280 [Bartonella henselae str. Houston-1]
          Length = 1040

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 79/636 (12%), Positives = 180/636 (28%), Gaps = 69/636 (10%)

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA-----SILARRIAYTISN 355
           R       + W  + + ++ +               PQ+++A       LARR+A  +  
Sbjct: 350 RDDYENLCENWSFIEAINEREEALAIAVALRNAIEEPQKTAALITNDRNLARRVAAELQR 409

Query: 356 M-IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
             I  +        + + A  + +L+     +         LK  + ++ +G +R  L +
Sbjct: 410 FGIEANDSGGIPLAQTLPATLLRLLLENVFQSGDPIAFLSLLK--HPLTTLGQNRHRLRE 467

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
                +L  L         + S + + +   F  +  +I+    +  ET  + +   + A
Sbjct: 468 MAENFELFVL-------RGNTSCINLCECDKFFETWTEIY--SHKISETNVIDQQNCEEA 518

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG--AKKGRQQ---FISRFGNEVIDVL 529
                     ++ +  L+   + C+ ++     +      GR +       + +E    L
Sbjct: 519 RLLCHLLVKAVEPLASLMKQKKECTVNEAMVATVEVFENFGRDENNSLAHLYQHEAGQTL 578

Query: 530 DEFL-NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
             FL           +   + L                  H  + I     ++      V
Sbjct: 579 LTFLRELVSDQSGLKFQLCEWLAIFSALIATRSVTPSPGGHPRLFIWGTLESRLQTVDTV 638

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            +       +         +   +     +     +     +     +   K        
Sbjct: 639 VIGGLNEGSWPITTRNDAFLSRPMKIMLTLEPPEKRIGLSAHDFQWAMGMNK-------- 690

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
               V M+RA   L +    +  +       T                 +  T  ++   
Sbjct: 691 ----VVMSRA---LRVNHAPSLPSRWLQRLETVIGKQVWKQIRARGEIFLHWTKMLDHTN 743

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
            IA           P+   +   +     +I    + P      +   L P         
Sbjct: 744 IIAG-----AKRPYPVPPLDARPRHFSVTEIATLRYDPYAIYAKKILRLKP--------- 789

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS 827
            L++L+       RG++ H +       +      N +        + +        + +
Sbjct: 790 -LKALIHAPGASERGILYHAIFSAFCTKVKNPNSANVLDVLLNIGREEFNKFNLPLDIEA 848

Query: 828 ITR---------LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN- 877
           I            L+     +      Y+EV VS KI      + +SGR D+I +     
Sbjct: 849 IWWNNFENLAPFFLQWE--QSLGPRKRYAEV-VSQKIPIGTTGLTLSGRADRIDVLPGKM 905

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           + I ++KT        + +      QL++   +L  
Sbjct: 906 VEIIDFKTSTPPSS--KQVRDLLFPQLALEAALLMQ 939


>gi|325982039|ref|YP_004294441.1| putative DNA repair protein [Nitrosomonas sp. AL212]
 gi|325531558|gb|ADZ26279.1| putative DNA repair protein [Nitrosomonas sp. AL212]
          Length = 923

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 74/615 (12%), Positives = 168/615 (27%), Gaps = 70/615 (11%)

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
             F+    +      A      I  +  +      G       K    L+R  K+     
Sbjct: 228 QRFEYTNSQEEIYQAAIWARSKIETVSNSVNSVRVGIVVPALMKYRNTLIRIFKEVMHPD 287

Query: 391 FLTRFLKNDYKI-SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                      I     +    LT++  I         +  + +       L+SP    S
Sbjct: 288 IRLALPGAKQNIAPFNVSLGLALTNYPLIDIAFVGLALLDQKVEFNRISYWLRSPFLAGS 347

Query: 450 EDDI-------FKICTQRHETETVYEYIQKFANCGISK----FQHVIKYIHELIH-IAQF 497
           E+++        +I        ++       +     K      H +  +          
Sbjct: 348 ENEMSQRVLLDAQIRRFSEPEISLERLFILVSRASGGKECPILLHCLSVLRIFRQTRLPQ 407

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDV-----LDEFLNFTLRNEQNSYS-SLQELI 551
              H  F  I+        F    G +  +          +      +Q +   S  E +
Sbjct: 408 SDSHTVFARIIAEVLQILGFPGERGLDSSEFQTLKKWQMLVANFAALDQVNAKTSYPEAV 467

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           S L Q            +  V+I+ V  A G+E   ++++    + +  +      +   
Sbjct: 468 SRLRQMAANTLFQPETPNVPVQIIDVFEATGMEFDHLWVMGLSDEQWPLRSHPNPFLPLE 527

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           L     +P     S   ++                  RL    ++ A D  +I  +   S
Sbjct: 528 LQRKAKLPW---GSTLESSAYCQ--------------RLTRNWLSSAKD--VILSYPRYS 568

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
           N++  ++     ++      +  +  ++  +          E+      +   +      
Sbjct: 569 NDRDGHELKSSPLIRSIPLREAVILDMEQHHERIIQS-CEMEYIVDCESSPLGKEMAKQG 627

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL- 790
                  I      P +        +            L++  +      RGL++H++L 
Sbjct: 628 IKGGTSVIKDYAACPFRAWAKHRLSIT----------GLDAPHTGLNAAERGLLVHQVLA 677

Query: 791 ---------QVIFTLPEHKRKNFITSY-------CTKNAKLWPAKEYKNLLLSITRLLEN 834
                    + +  + +H  +  +            +   +  +  +  +       L  
Sbjct: 678 QLWQQLKTKEALDDISDHNLERMLEGITNSVILQMEQYRPIALSGRFAQIEQRRLFRLVL 737

Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQE- 892
             +       S+  ++   K      D+I++ R+D+I         + +YKT     Q  
Sbjct: 738 EWLVEEKKRSSFRMIAAEEKCLIQIGDLILNARLDRIDELEDGQWIVIDYKTSRKSIQSM 797

Query: 893 IEHIPYTHIAQLSIY 907
           I   P     QL +Y
Sbjct: 798 IGERPDE--PQLPLY 810


>gi|46580468|ref|YP_011276.1| hypothetical protein DVU2063 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449887|gb|AAS96536.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234210|gb|ADP87064.1| hypothetical protein Deval_1915 [Desulfovibrio vulgaris RCH1]
          Length = 984

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/430 (9%), Positives = 115/430 (26%), Gaps = 47/430 (10%)

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +      +   +  +    +      R   +        + L   +   +   + S  + 
Sbjct: 447 LSRWERASTPAALAEAVGFLCAVLLERGGDLWERFPIDAECLFRLMQRVIPALRESELAA 506

Query: 548 QELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                ++      E          +     ++++ +  ++ L    V ++D         
Sbjct: 507 TAFPQDVLFTILRETVRAERVPFEADPIGGLQVLGMLESRLLTFRRVIVLDATDDRLPGA 566

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                 +  SL    G+P    + +   +    L+         E   LL+      S  
Sbjct: 567 PPNDPLLPDSLRPQVGLPDARRRERITAHNFHRLLAG------AEEVNLLWQAGVERSGL 620

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L         ++KK+  R   +M+   +H +    ++                     E+
Sbjct: 621 L---------DDKKARSRFVEEML---WHEERAAGRLFRPGEGPLGTVTCTVR---PFES 665

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
           TP    +T        +  ++  SP + D                    + ++       
Sbjct: 666 TPRHILKTDAVRDALARFFERPVSPSRLDAYLTCPFRFYHEHLCRLAPPDEVIEGEDPAA 725

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITS------YCTKNAKLWPAK--EYKNLLLSITRLLE 833
            G ++H   + +       R   +T          ++ +    +             +LE
Sbjct: 726 VGTLLH---EALNRFYAPWRGIEVTRDRLDPEMLERHFRQSLHESGLADRFPADALAMLE 782

Query: 834 N---PMMTTAMSCDSYS------EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
                 +   ++           E + +  +    +   + GR+D++    +   + +YK
Sbjct: 783 TAGPERLRRFLARQPDRTVVLHLEEAFTADVEVDGRTRRLGGRLDRVDRRGEGAVVLDYK 842

Query: 885 THHHVPQEIE 894
           T        +
Sbjct: 843 TGSLRTVRPD 852


>gi|319403514|emb|CBI77093.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 1040

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 73/555 (13%), Positives = 158/555 (28%), Gaps = 54/555 (9%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +          + I    +    L   L    L  L   I    D ++F+ +LK PL 
Sbjct: 398 RNLARRVAAELQRFGIEANDSGEMPLAQTLPATLLRLLLENIFKPGDPVAFLSLLKHPLT 457

Query: 447 NFSEDDIFKICTQRHE----------TETVYEYIQKFANCGISKFQHV-------IKYIH 489
               +  +      +              + E  Q F     + F  V       ++ I 
Sbjct: 458 TLEYNHNYLREMAENFELLVLRGNACRINLCECDQFFKTWMQTHFHKVSKNYMPDLQKIE 517

Query: 490 ELIHIAQFC--SPHDFFTLILGAKKGRQQFISRFGNEVIDVL--DEFLNFTLRNEQNSYS 545
           E   +      +     TLI   ++      +    EV +    D   +     +  +  
Sbjct: 518 EAKFLCHLLVKAVDPLVTLIKQERECSINEAAIATVEVFENFGRDADNSLAHLYQNEAGK 577

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +L   + EL      +K              + +A      V       S++F    ++ 
Sbjct: 578 ALATFLRELVSDQSGLKFHLYEWP------ALFSALMATRSVSPSPGGHSRLFIWGTLES 631

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG----MTRASDQ 661
                +      +       K+ N+        +  + +    R+ +           DQ
Sbjct: 632 RLQTVNTVVIGSLNEGSWPIKTHNDAFLSRPMKMTLTLEPPEQRIGFSAHDFQWAMGMDQ 691

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           +I+ + +  ++      R    +         +    +    ++  + +    S    E 
Sbjct: 692 VIMSRATRVNHTPSVPSRWLQRLETVIGKQVWKQICTRGELFLHWAKMLDNTKSIIPAER 751

Query: 722 T-PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             P+   +   +     +I      P      +   L P          L+ L+ D  + 
Sbjct: 752 PCPVPPLDMRPRHFSVTEIETLRHDPYAIYAKKILRLKP----------LKPLIHDPCSA 801

Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
            RG + H +L    T  +++    +        +    K        I   L    +   
Sbjct: 802 ERGTLYHAILAAFCTQIKNQNSTNMLEILLTIGRKEFDKLNLPPDTEIIWWLNFENLAPF 861

Query: 841 M--------SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ 891
           +        S + Y+EV ++      +  + +SGR D++ I     I I ++KT      
Sbjct: 862 LIQWEQSLGSRERYAEV-IAQNTLIGETGVTLSGRADRLDILPDKTIEIIDFKTSTPPSS 920

Query: 892 EIEHIPYTHIAQLSI 906
               +      QL++
Sbjct: 921 T--QVINLFSPQLAL 933


>gi|111222283|ref|YP_713077.1| hypothetical protein FRAAL2865 [Frankia alni ACN14a]
 gi|111149815|emb|CAJ61509.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 328

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 68/233 (29%), Gaps = 35/233 (15%)

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLP 797
           P   +      L+PS         L              ++  +RG ++H +L+ +F LP
Sbjct: 40  PRGAERPLIGSLSPSRAADFVNCPLRYRFRVVDRLPEPPSEAASRGTVVHSVLENLFDLP 99

Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNL------LLSITRLLENPM--MTTAMS------- 842
              R         + A     +    +        ++   L++    +    +       
Sbjct: 100 PAGRTLEAARTLVEPAWQALREREPAVETLFDGPDALAAWLDSARDLLAGYFALEDPARL 159

Query: 843 CDSYSEVSVSGKINCPKKDIIISGRIDQISI--SQQN--IFIFEYKTHHHVPQEIEHIPY 898
             S  E+ V   ++     + + G +D++    + Q   + + +YKT        E    
Sbjct: 160 APSARELYVEHVLDS---GLRLRGYVDRLDEATTPQGLALRVVDYKTGRSPGPAFEASA- 215

Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
             + Q+  Y  +L            L Y+       +              +I
Sbjct: 216 --MFQMRFYALLLWRIRGVIPRELRLYYL--GDRTWLRAAPDEADLRATERRI 264


>gi|320532757|ref|ZP_08033542.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135029|gb|EFW27192.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 712

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 66/664 (9%), Positives = 172/664 (25%), Gaps = 68/664 (10%)

Query: 2   KNRFGLSLNESYELIYK-------DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ 54
           ++   L+   +     +                       ++L++ T + T+        
Sbjct: 63  RDAVLLAPTRARADWLRGRAAHLLREGHGDGVVRVRTPAALALTILTTSLTMRPDPLPPP 122

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD-- 112
                   +   + + S  +T    P +   ++    +  +L  +  +      ++ D  
Sbjct: 123 VLLAGAEEDSVLASMIST-VTWPGLPTEATGSRAFRSELRNLLARAGELGVNADELADLG 181

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           R     ++      L           E + +   +D   L     + L   D  + +   
Sbjct: 182 RRLEVPIWGPASQLLRTWDAQGRASAERRAQTRKMDTARLQDRAVEALSSWD--SDVVTV 239

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
                + +L+D+ QD +     ++ +L      G         +  +GD   ++ +F G 
Sbjct: 240 PRPVPDLVLVDDYQDCTAATARLLTALATPDPDGHRAQ-----IVVLGDPDVAVETFRGG 294

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P  ++  +         +G   + ++L   +R    I  VV    +        +   T
Sbjct: 295 TPSLLIAAEDH-------SGFGATRLQLTTCYRGNPGIAAVVADQSARVPVTGTTAHRQT 347

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
           T     S+R+   G+        +  +        S       + +      +   IA++
Sbjct: 348 TLAPQSSARLSSGGSDDERPAAAAGVE---VILASSTWQEHAHVARALRLEHVHHGIAWS 404

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV---GNDR 409
              +I      +    R ++ + + +  R              L +  + ++    G   
Sbjct: 405 QMAVIARSAADAETLARDLRRRGVPLASRTPAVLLRAEPAAAALLDIGRAAIRDQLGGHG 464

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP--------------LFNFSEDDIFK 455
                  AI  L +    + + +       + + P                      +  
Sbjct: 465 EPPQRDAAITLLTSPLVGLTTMDLRRLRRRLRQDPEATATRVSGTETWARIGADAALLAL 524

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS------PHDFFTLILG 509
           +      +        +  +    +     + I  L                        
Sbjct: 525 LADTEQASAFARSLDGEPLSTQADRLLTAARIIEALRAATGETPADAPRDVEALLWAAWN 584

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRN----------------EQNSYSSLQELISE 553
           A    + + +         +   L+    +                E++        ++E
Sbjct: 585 ASDRAEVWRATALLPSASPVRSLLSEAAEHDLDVVTALFKRAEVWAERHPGQDASCFLAE 644

Query: 554 LEQY--PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           L+    P             V +MT     G E  +V +       +    ++       
Sbjct: 645 LDAEVLPSDSVAPQGRRPEGVAVMTPARCAGQEWELVVVAGLERDRWPDLRLRDSLTRTG 704

Query: 612 LNDD 615
           L  D
Sbjct: 705 LLVD 708


>gi|323946455|gb|EGB42481.1| recB protein [Escherichia coli H120]
          Length = 250

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 52/188 (27%), Gaps = 44/188 (23%)

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
           +    +     +  + G  +H L + +         N++          + ++    L  
Sbjct: 6   EEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVD-PNWVQEKLELGG--FESQWEPVLTE 62

Query: 827 SITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK--------------------- 859
            IT +L+ P+      ++     D   E+     I+ P                      
Sbjct: 63  WITAVLQAPLNETGVSLSQLSDRDKQVEMEFYLPISEPLIASQLDALIRQFDPLSAGCPP 122

Query: 860 -----KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIAQLS 905
                   ++ G ID +   +   ++ +YK++                    + +  Q  
Sbjct: 123 LEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQ 182

Query: 906 IYEKILKD 913
           +Y   L  
Sbjct: 183 LYTLALHR 190


>gi|120602212|ref|YP_966612.1| hypothetical protein Dvul_1165 [Desulfovibrio vulgaris DP4]
 gi|120562441|gb|ABM28185.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
          Length = 984

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/430 (10%), Positives = 115/430 (26%), Gaps = 47/430 (10%)

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +      +   +  D    +      R   +        + L   +   +   + S  + 
Sbjct: 447 LSRWERASTPAALADAVGFLCAVLLERGGDLWERFPIDAECLFRLMQRVIPALRESELAA 506

Query: 548 QELISEL------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
                ++      E          +     ++++ +  ++ L    V ++D         
Sbjct: 507 TAFPQDVLFTILRETVRAERVPFEADPIGGLQVLGMLESRLLTFRRVIVLDATDDRLPGA 566

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                 +  SL    G+P    + +   +    L+         E   LL+      S  
Sbjct: 567 PPNDPLLPDSLRPQVGLPDARRRERITAHNFHRLLAG------AEEVNLLWQAGVERSGL 620

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L         ++KK+  R   +M+   +H +    ++                     E+
Sbjct: 621 L---------DDKKARSRFVEEML---WHEERAAGRLFRPGEGPLGTVTCTVR---PFES 665

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
           TP    +T        +  ++  SP + D                    + ++       
Sbjct: 666 TPRHILKTDAVRDALARFFERPVSPSRLDAYLTCPFRFYHEHLCRLAPPDEVIEGEDPAA 725

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITS------YCTKNAKLWPAK--EYKNLLLSITRLLE 833
            G ++H   + +       R   +T          ++ +    +             +LE
Sbjct: 726 VGTLLH---EALNRFYAPWRGIEVTRDRLDPEMLERHFRQSLHESGLADRFPADALAMLE 782

Query: 834 N---PMMTTAMSCDSYS------EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
                 +   ++           E + +  +    +   + GR+D++    +   + +YK
Sbjct: 783 TAGPERLRRFLARQPDRTVVLHLEEAFTADVEVDGRTRRLGGRLDRVDRRGEGAVVLDYK 842

Query: 885 THHHVPQEIE 894
           T        +
Sbjct: 843 TGSLRTVRPD 852


>gi|213400881|gb|ACJ47089.1| hypothetical protein [Wolbachia endosymbiont of Nasutitermes
           nigriceps]
          Length = 157

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++    +    G+ +   +L  SFRST  IL +VD++F+     +       
Sbjct: 1   NPHLFNYMQQYFHTKTG--GRDWISCQLEKSFRSTPHILALVDRLFNN---FREEISFVD 55

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
           + I+H   R    G +++W  +    + +    Q   T   D +  +    +LA+ IA+ 
Sbjct: 56  SEIKHIPHRETDQGYIEIWPLLPRCKEEEQQALQIHLTQRKDHVIAD---RLLAQAIAHK 112

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           + N +    I    K R I+ +DI++LVR+R 
Sbjct: 113 VHNWLNEGRIL-VAKDRHIEPRDIMILVRQRN 143


>gi|168177772|ref|ZP_02612436.1| ATP-dependent nuclease subunit B [Clostridium botulinum NCTC 2916]
 gi|182670447|gb|EDT82421.1| ATP-dependent nuclease subunit B [Clostridium botulinum NCTC 2916]
          Length = 1150

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 71/680 (10%), Positives = 184/680 (27%), Gaps = 140/680 (20%)

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + KDI V+     D      +   +   Y I    + +  + ++  I  +++    +
Sbjct: 334 KGCRFKDIAVIT---GDLEGYENIISSVFLQYNIPFFIDKKREINNNPIIVLILSALEVL 390

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANCGISKF---- 481
                  S    LK+ L + + ++   +             +   + + +   S +    
Sbjct: 391 SKNWTYESVFRYLKTGLLDINNEEMDILENYVLANGIKGYQWTNDKPWEHKSFSNYELED 450

Query: 482 ---QHVIKYIHELIHIA----------------------------QFCSPHDFFTLILGA 510
              + ++  I+++ + A                               +  D    ++  
Sbjct: 451 QVEKELLAKINDIRYKAMEPIVTLNKNFKSIDKAKEFCEVLYEFLCNINLPDKIQNMIED 510

Query: 511 KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
            K   +   +   N++ +++ E L+  +        SL+E    L+      +       
Sbjct: 511 FKVEGEIEKASEYNQIWNIVMEVLDQIVEVIGEEKISLKEFFKILQTGFSEYEIGLIPPT 570

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            ++V + ++   +      +++V     +F                + GI     +    
Sbjct: 571 LDQVMVGSITRLRSHNINTLYIVGVNDGIFPSP-----------LKEEGILSDDDRKFLG 619

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           +  +         +   E   L+Y  +T  S  L +         K          +   
Sbjct: 620 DKGLEIAKDTKSIA--FEEQFLVYSTLTTPSKYLRLSYPIADGEGKTLRPSIIISRIKKI 677

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--EQKIPKKLFSP 746
           F N      I   N   ++                  R++     +D       K     
Sbjct: 678 FTNICEENDIVKLNGEEEELKNISSAKPTFNYLISNLRKDVEGVKIDNIWGDTYKWYLEN 737

Query: 747 ---------------------------IKNDINEPYILNPSTIDTKGKTNLESLLS-DNQ 778
                                      I+N   +P  ++ S ++   +      +    +
Sbjct: 738 EFWIEKLNRLIKGFDYTNQSKYIETKKIRNLYGKPLKISVSRVEKFSQCPFAYFVQYGLK 797

Query: 779 TFNR----------GLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKN-- 823
             +R          G+ +H +L+      E    +      ++  +       +E  N  
Sbjct: 798 AKDRKIFNLSYPDLGIFMHSILEKFSHELEKKGLEWGTMDLNWAEEEIDKLINEELDNKS 857

Query: 824 ------------LLLSITRLLENPMMTTAMSCDSYS----EVSVSGKINCPKK------- 860
                       +  S+ ++L+  +    +                  +           
Sbjct: 858 LDILNSSKRYEYVTKSVKKILKRSI--WLIGEHIKRGNFKPSYYELSFDIDGDYPPIAME 915

Query: 861 ---DIIIS--GRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI- 910
                +I+  GR+D++         +  I +YK+      ++  + Y    QL IY    
Sbjct: 916 LHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSGA-KEFKLSDVYYGLQLQLLIYLDAI 974

Query: 911 LKDSYPNKSLV---CLLIYV 927
           L +      +      L+Y+
Sbjct: 975 LTELAERSGINGEPGALLYL 994


>gi|229003979|ref|ZP_04161784.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock1-4]
 gi|228757255|gb|EEM06495.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock1-4]
          Length = 1177

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 78/723 (10%), Positives = 200/723 (27%), Gaps = 158/723 (21%)

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
           + + +  P ++  +    +L   ++       +A  I  ++  +           + +DI
Sbjct: 301 EAEFESRPSKKFQSEPDITLYTAANLRAEVEGVAREIRRLVAEEE---------YRYRDI 351

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VL+R          + + L  DY I    +++  ++ H  I+ + +    I       +
Sbjct: 352 TVLLRN---GESYYDVMKTLFTDYDIPHFIDEKRPMSHHPLIECIRSALEVISGNWRYDA 408

Query: 437 FVCMLKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF----- 481
               +K+ L               D+    C         +   + +             
Sbjct: 409 IFRCIKTELLYPLDVRKESMREEMDEFENYCLAYGVQGKRWTADEPWTYRRYRSLDGVNG 468

Query: 482 ------QHVIKYIHELIHIA-------------------QFCSPHDFFTLI-----LGAK 511
                 + + + I+ L  +                       + + F   +     L   
Sbjct: 469 MQTDSEREMEEKINRLRDVVRTPIISLQKRLKRASSVVQMCEAVYLFLEELDVPKKLEDL 528

Query: 512 KGRQQ-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           + R +       +   ++V + +   L+  +        S    I  +      ++ A+ 
Sbjct: 529 RMRAEAEGNFLFASDHDQVWEEVMNLLDTFVEMLGEEKMSRSMFIDVMTTGLEALQFANI 588

Query: 567 ANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               ++V I  +  ++  +    F++     +                 D G+     + 
Sbjct: 589 PPSLDQVLIANIDRSRLSDIRAAFVIGANEGIIPAAPS-----------DEGMLSDEERE 637

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                 V   +    + T  E   ++Y  +TRAS++L I         K     ++   V
Sbjct: 638 FLVTAGVE--LAPTTRQTLLEEQFVIYQTVTRASEKLYISCPLADEEGKTLLSSSFIKKV 695

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ------LMDEQKI 739
              F   + V      N +++   I+Y  +     +   ++ +  K+      L     +
Sbjct: 696 KRMFPCVKEVFVTNDVNDLSRQVQISYVATPEVTLSYVTQQLQNWKRYGFEGNLDFWWDV 755

Query: 740 PKKLFSPIKNDINEPYIL---------------------------NPSTIDTKGKTN--- 769
                +  +       +L                           + S ++   +     
Sbjct: 756 YNFYVTSPEWKQKSSRVLSSLFYRNRAQKLSSVVSRDLYGDKIKGSVSRMELFNRCAYAH 815

Query: 770 --------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT---SYCTKNAKLWPA 818
                    E  +      + G + H  L+ I      + + +       C   + +   
Sbjct: 816 FAQHGLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSAVVIE 875

Query: 819 KEYKNLLLSIT----------RLLENPMMTT--AMSCDSYS----EVSVSGKINCPKKDI 862
           +    L   I           + L+  +  T   +   + S     V +           
Sbjct: 876 EIAPLLQRQILLSSNRNYYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGS 935

Query: 863 I--------------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           +              + GRID++  ++      + I +YK+      ++  + Y    Q+
Sbjct: 936 LPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-TKALDLTEVYYGLALQM 994

Query: 905 SIY 907
             Y
Sbjct: 995 LTY 997


>gi|306821434|ref|ZP_07455038.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
 gi|304550509|gb|EFM38496.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae
            ATCC 43715]
          Length = 1587

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            I+IDE QD     ++++ ++           +    + AVGD+ Q+IY F G+  K +  
Sbjct: 1156 IVIDEAQDMDEDSFKLLEAII--------AANDGIRVIAVGDDDQNIYGFRGSSSKYMQL 1207

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
                 +          +  EL  ++RS   I+   D+     +N 
Sbjct: 1208 LIDKYE---------ATKYELVTNYRSAKKIVEFSDEFLKNLKNR 1243



 Score = 44.9 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 68/225 (30%), Gaps = 53/225 (23%)

Query: 442  KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
             S +   + ++  +I       +   + +Q      +S    V  +  ++    +     
Sbjct: 1283 TSCILTSTNEEALQISAALKSMKINTKLLQTMERFKLSDLAEVRYFTKKINQEIEKNPSS 1342

Query: 502  DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
               +  +              +EV++     LN     E  + +   + +S+L+++    
Sbjct: 1343 LIISENIWKLAKESLISKYKDSEVLENC---LNMIEDFENTNKA---KFMSDLQEFIDES 1396

Query: 562  KRAHSANHN--EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                    +   V I T+H +KG E   V+L                             
Sbjct: 1397 VYEDFYRQDNKAVFISTIHKSKGREFDTVYL----------------------------- 1427

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                            +   K    +E  R +YVG+TRA ++L I
Sbjct: 1428 ----------------MLRGKLRDDDEEKRKIYVGLTRAKNKLHI 1456


>gi|237808366|ref|YP_002892806.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
 gi|237500627|gb|ACQ93220.1| UvrD/REP helicase [Tolumonas auensis DSM 9187]
          Length = 585

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 26/148 (17%)

Query: 136 HYEEAKKKNCVL------DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            Y+   +    +       + D+     D L +     ++   + +    I+IDE QD S
Sbjct: 175 EYQHLVETKNKMLKGGFATYRDIETLAVDALSQDKYQHFV-NLLVKRYPLIIIDECQDLS 233

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q  +++ L +              L  VGD  Q+IY F   EP +V +          
Sbjct: 234 EEQLTILQILAD----------KGTKLHFVGDLHQAIYGFRDVEPAKVKKFVND------ 277

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKV 277
                F+ ++L  +FRS  +I+ +  K+
Sbjct: 278 ---NYFNKLQLTRNFRSCQNIVNLCAKL 302


>gi|30250112|ref|NP_842182.1| hypothetical protein NE2178 [Nitrosomonas europaea ATCC 19718]
 gi|30139219|emb|CAD86089.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 909

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/605 (10%), Positives = 145/605 (23%), Gaps = 83/605 (13%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R+ A  I   +  +            A    ++ +   +  LI    +   +D   S   
Sbjct: 243 RQAARWIRQRLEENPAARIALVVPELAAQREMICQTLDEV-LIPQALQPEHHDRVRSYNL 301

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
           +    L  +  +   + +     +  +      +L+S      + ++             
Sbjct: 302 SLGKPLDRYPPVSLALDVLGLSETVIELPHVSRVLRSSFIAGGDREMNARALLDARLRES 361

Query: 467 YEYIQKFANCGISKFQH--------VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
            E+         +  +         + + +  L+   +                   + I
Sbjct: 362 GEWNLTLQKLLTNAARSGQPYSCPLLAECLSNLMKQVKVSLAPTSPGEWAQRFGQWLKAI 421

Query: 519 SRFGN-----EVIDVLDEFLNFTLRNEQNS----YSSLQELISELEQYPPTIKRAHSANH 569
              G      E   V+  +                 SL E + +L            +  
Sbjct: 422 GWPGERGLSSEEYQVIQAWQGVLREFSTLDWVIRSVSLTEALQQLRHMVAGTIFQPESAE 481

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             V+++ +    GL+   ++++     VF         +  +L  +   P    + + R 
Sbjct: 482 APVQVLGLFETSGLQFDYLWIMGLHDGVFPASSRPNPFLPLTLQREVDAPHSSARRELRV 541

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
                                    +T  + +++I       +E   +          S 
Sbjct: 542 AAALLQR------------------ITTNATEVVISYPQRKGDEILDSSPLIDAFPALSE 583

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
                  +    +S+              P           K    +   P + F+ ++ 
Sbjct: 584 EMLAMGTQSAWRDSVYHSRQQEVLSEDVAPTFVGTGIPGGSKLFKLQAACPFRAFAELRL 643

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----------IFTLPE- 798
                  +                        RG ++H+++++          +  L   
Sbjct: 644 VARPLGRIQI----------------GLNALVRGTLLHRVMEMVWAELDSLAALANLSPG 687

Query: 799 -----------HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
                               Y     +   A E K L   +   LE              
Sbjct: 688 ELNALVAGKVNEAIYEIAPRYPHTFGERLQALESKRLHALVLAWLEMEKQRPPFRVSGR- 746

Query: 848 EVSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEI-EHIPYTHIAQLS 905
                 +       + I+ RID+I  + +    + +YKT            P     QL 
Sbjct: 747 ----EMETELELNGLRINLRIDRIDTLEEGGELLIDYKTGEVKASAWFGDRPDE--PQLP 800

Query: 906 IYEKI 910
           +Y   
Sbjct: 801 LYSLA 805


>gi|196250344|ref|ZP_03149037.1| UvrD/REP helicase [Geobacillus sp. G11MC16]
 gi|196210233|gb|EDY04999.1| UvrD/REP helicase [Geobacillus sp. G11MC16]
          Length = 615

 Score = 76.9 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 22/136 (16%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            K+  + + D+      LL+K      I   I +    I+IDE QD S IQ E+   L  
Sbjct: 200 AKDGFVTYSDIEYWAFKLLQK---RGDILDLIAKRFPFIIIDECQDLSEIQLEIFELL-- 254

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                     +  ++  VGD  Q+IY F    P +V  + ++ +            +EL 
Sbjct: 255 --------KHAGVSIHLVGDLDQAIYEFRNVFPDKVRNKIKLWR---------LHQLELS 297

Query: 262 LSFRSTADILTVVDKV 277
           L++RS   I  V+ K+
Sbjct: 298 LNYRSVQQICNVITKL 313


>gi|83942009|ref|ZP_00954471.1| hypothetical protein EE36_07233 [Sulfitobacter sp. EE-36]
 gi|83847829|gb|EAP85704.1| hypothetical protein EE36_07233 [Sulfitobacter sp. EE-36]
          Length = 987

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 78/714 (10%), Positives = 184/714 (25%), Gaps = 71/714 (9%)

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS-------TADIL 271
             D  Q++++  G +       +    +       +  + +L +S RS       T    
Sbjct: 234 CFDMPQAVWTDLGED-------QEKISQDHPQYRFRDLLRQLEMS-RSKIEAWTDTPPPS 285

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
              + + S+      ++    T              + L +    + ++     +     
Sbjct: 286 AARNALVSLSLRPAPVTHVWLTEGPKLPDLHQATEGLTLIQAPTPRAEALAIALRLRQAV 345

Query: 332 YFDSLPQ-ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                    +   +L+R++   +      + +  +     +        +R   D  L  
Sbjct: 346 EDGKTAALITPDRMLSRQVTSALDRW---NILPDDSAGLPLHLSPPGRFLRHVGDLFLRK 402

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             +  L    K  +  +        L  + L    R       D   V  L     + S+
Sbjct: 403 LDSEALLTLLKHPLTHSGGDRNFHQLNTQRLELQLRRDGLPYPDAEGVLKLARKTVSRSK 462

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           D              + +                +     +   A    P+  +      
Sbjct: 463 DPAQMDVWADWVGTHLTDCELTGDRPLEEWVALHMALADAIADGATPSQPNGLWQH---- 518

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
                      G E   V+++         + S +   +L+  L Q      R   A H 
Sbjct: 519 ---------HAGEEAAKVMNDLAENAPYGGEMSAADYTDLVGALLQQGE--IRDRDAPHP 567

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V I     A+   + +V L       +         +   +    G+ +   +     +
Sbjct: 568 NVMIWGTLEARVQGADLVILGGLNDSTWPEAPPPDPWLNRQMRLKAGLLLPERRIGLSAH 627

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                I   +            V +TRA           +   +    R    +      
Sbjct: 628 DYQQSIAAPE------------VCLTRAIR---------SDEAETVPSRWLNRLGNLLNG 666

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
              +         I + +    +                  +     +      + IK  
Sbjct: 667 LPAQGGDAAWKAMIKRGDHWLDQARALETVTRVPPAPRPSPRPPRAARPHALSVTEIKRL 726

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
           I +PY +      +     L  L+       RG+I+H++++        +      S+  
Sbjct: 727 IRDPYAIYAKH--SLKLRALNPLVQSPDAPVRGIIVHEIMERFIKSVTAEPALLTKSHLL 784

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY------SEVSVS----GKINCPKK 860
           + A+     E       +  L +   +      +        +  +      G    P  
Sbjct: 785 ETARTVLEAEAPWPAARVMWLTKIERIADWFIENELHRQSYSTPAAFEKAAKGSHAFPDL 844

Query: 861 DIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
              + G  D+I  ++   I I++YKT        +        QL +   ++++
Sbjct: 845 GFTLMGFADRIDRTEDGDILIYDYKTGTPPSVAEQKAFDK---QLLLEAAMVEE 895


>gi|229018123|ref|ZP_04174998.1| UvrD/Rep helicase [Bacillus cereus AH1273]
 gi|229024305|ref|ZP_04180763.1| UvrD/Rep helicase [Bacillus cereus AH1272]
 gi|228736999|gb|EEL87536.1| UvrD/Rep helicase [Bacillus cereus AH1272]
 gi|228743214|gb|EEL93339.1| UvrD/Rep helicase [Bacillus cereus AH1273]
          Length = 698

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           ++ Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 467 EMGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 515

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 516 --IEDWNAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIRNAEIPVGLATPV 565

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + V    +           +  D           A     
Sbjct: 566 FRSGEDVKVIRAEDQFTEVLKTVQHLQNEDVKTIAVIGRT-DDECRDIYEKLTNAGLTVN 624

Query: 352 TISN 355
            I  
Sbjct: 625 FIEA 628


>gi|307153656|ref|YP_003889040.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
 gi|306983884|gb|ADN15765.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
          Length = 623

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 54/431 (12%), Positives = 113/431 (26%), Gaps = 52/431 (12%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
             + D+ D +                +    +    +LIDE QD +  Q E+   L    
Sbjct: 197 RKIFDYTDQVWLPVK-------WNVAQSSWFKPYKFVLIDECQDLNATQLELASMLAG-- 247

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                       +  VGD +Q+I  F GA+        R           K   + L L 
Sbjct: 248 --------KTGRMLFVGDPRQAIMGFAGADSDSYYNIVRR---------TKAIELPLSLC 290

Query: 264 FRSTADILTVVDKVFSIPE---NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
           +R     + +V+K++        A          I     +  +   + L  +      +
Sbjct: 291 YRCPKTHIRLVNKIYPDIPIKATANAKEGTIEQIIEDDLDKYLKPHDLILSRKTNPLVST 350

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                 +  ++                 IA     + G +    N    + +   I  L 
Sbjct: 351 CIRLLAKGVSAKIKGKDIGKIIQQELEAIAS----LGGFEYKRFNDFFEMYKQAKIARL- 405

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
              +       +   LK+            I T       + AL + I     D   + +
Sbjct: 406 ---EQMDNSEQIIENLKDRL-----SALHTIYTARPEANSIEALLKSIDDLFSDEEALVV 457

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           L +       +          +    +E   ++         +V      L         
Sbjct: 458 LSTCHRAKGLEAERVFILNPGDMPMTWENQLEWQEDQEHNLLYV-----ALTRSKDALFI 512

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                    ++   ++      +E  +   E L     +E +  +S      EL+    +
Sbjct: 513 IGEAEWFDASEDTSEELKLITSSETSEDTSEELKLITSSETSEDTS-----EELKLITSS 567

Query: 561 IKRAHSANHNE 571
                ++  + 
Sbjct: 568 ETSEDTSEEDC 578


>gi|226947662|ref|YP_002802753.1| ATP-dependent nuclease subunit B [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842314|gb|ACO84980.1| ATP-dependent nuclease subunit B [Clostridium botulinum A2 str.
           Kyoto]
          Length = 1147

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 71/680 (10%), Positives = 184/680 (27%), Gaps = 140/680 (20%)

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + KDI V+     D      +   +   Y I    + +  + ++  I  +++    +
Sbjct: 334 KGCRFKDIAVIT---GDLEGYENIISSVFLQYNIPFFIDKKREINNNPIIVLILSALEVL 390

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANCGISKF---- 481
                  S    LK+ L + + ++   +             +   + + +   S +    
Sbjct: 391 SKNWTYESVFRYLKTGLLDINNEEMDILENYVLANGIKGYQWTNDKPWEHKSFSNYELED 450

Query: 482 ---QHVIKYIHELIHIA----------------------------QFCSPHDFFTLILGA 510
              + ++  I+++ + A                               +  D    ++  
Sbjct: 451 QVEKELLAKINDIRYKAMEPIVTLNKNFKSIDKAKEFCEVLYEFLCNINLPDKIQNMIED 510

Query: 511 KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
            K   +   +   N++ +++ E L+  +        SL+E    L+      +       
Sbjct: 511 FKVEGEIEKASEYNQIWNIVMEVLDQIVEVIGEEKISLKEFFKILQTGFSEYEIGLIPPT 570

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            ++V + ++   +      +++V     +F                + GI     +    
Sbjct: 571 LDQVMVGSITRLRSHNINTLYIVGVNDGIFPSP-----------LKEEGILSDDDRKFLG 619

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           +  +         +   E   L+Y  +T  S  L +         K          +   
Sbjct: 620 DKGLEIAKDTKSIA--FEEQFLVYSTLTTPSKYLRLSYPIADGEGKTLRPSIIISRIKKI 677

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--EQKIPKKLFSP 746
           F N      I   N   ++                  R++     +D       K     
Sbjct: 678 FTNICEENDIVKLNGEEEELKNISSAKPTFNYLISNLRKDVEGVKIDNIWGDTYKWYLEN 737

Query: 747 ---------------------------IKNDINEPYILNPSTIDTKGKTNLESLLS-DNQ 778
                                      I+N   +P  ++ S ++   +      +    +
Sbjct: 738 EFWIEKLNRLIKGFDYTNQSKYIETKKIRNLYGKPLKISVSRVEKFSQCPFAYFVQYGLK 797

Query: 779 TFNR----------GLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKN-- 823
             +R          G+ +H +L+      E    +      ++  +       +E  N  
Sbjct: 798 AKDRKIFNLSYPDLGIFMHSILEKFSHELEKKGLEWDTMDLNWAEEEIDKLINEELDNKS 857

Query: 824 ------------LLLSITRLLENPMMTTAMSCDSYS----EVSVSGKINCPKK------- 860
                       +  S+ ++L+  +    +                  +           
Sbjct: 858 LDILNSSKRYEYVTKSVKKILKRSI--WLIGEHIKRGNFKPSYYELSFDIDGDYPPIAME 915

Query: 861 ---DIIIS--GRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI- 910
                +I+  GR+D++         +  I +YK+      ++  + Y    QL IY    
Sbjct: 916 LHSGEVINLIGRVDRVDLLQKDGATYLKIIDYKSGA-KEFKLSDVYYGLQLQLLIYLDAI 974

Query: 911 LKDSYPNKSLV---CLLIYV 927
           L +      +      L+Y+
Sbjct: 975 LTELAERSGINGEPGALLYL 994


>gi|222150841|ref|YP_002559994.1| ATP-dependent nuclease subunit B [Macrococcus caseolyticus
           JCSC5402]
 gi|222119963|dbj|BAH17298.1| ATP-dependent nuclease subunit B [Macrococcus caseolyticus
           JCSC5402]
          Length = 1118

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 87/678 (12%), Positives = 187/678 (27%), Gaps = 134/678 (19%)

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            L Q +S    A  IA+ I +++              + KDI+VL R             
Sbjct: 295 HLSQHASVPAEAAHIAHKIMDLVRKGE----------RFKDIVVLYR----DESYVKQLI 340

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN------- 447
            +   ++I    + + ++  H AI+ + +L     +          LK+ L         
Sbjct: 341 DVCRKHQIPYHTDYKELMIHHKAIELIRSLLDAFKTNMRMEHLFRALKTGLIAHEFKREE 400

Query: 448 -------FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                       I +             +  +       ++  +++YI  L+ +      
Sbjct: 401 DLLLIDMLENVMIERGMYYDDLIHKRKLFYDEKDVYEQDQWDALLQYIDYLLSV-----I 455

Query: 501 HDFFTLILGAKKGRQ---------------QFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             F   I+ A+ GR                +++ +  +   D  ++++  T        +
Sbjct: 456 EPFKERIVNAQSGRAFASAIYSFMLSISLPEYLMQHKDMAKDNGEQYIALTFDQILTGLN 515

Query: 546 S-LQELISELEQYPPT---------------IKRAHSANHNEVRIMTVHTAKGLESPVVF 589
             L + +  +++                      A     ++++I+ +  AK      VF
Sbjct: 516 QVLDDFVLIMDEVTLDYKVMCDIIDVGFLALEYNAPPQGLDQIQILNLDLAKVENKKYVF 575

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +      +      +   I                 +    I    +        ++   
Sbjct: 576 VCGVNDDILPRPMKEDALITDQE------------KRMMQEIGDIQLAPTTDVLIQDEWF 623

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD-----SFHNDERVKKIKLTNSI 704
           + Y  +T A   + I       N++      +   +              +       + 
Sbjct: 624 VFYNAVTHAQHSVYISYSLMNMNQEAMRPSRYLARLERQLHLEVQDMTLDMNPEDCITTY 683

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL------- 757
           +     A         +  +   ET  Q     K+            +E   L       
Sbjct: 684 HAGIKHAVSHIEDDTWSDVVAVYETDPQFEHVFKLRHYRNQSEMLAEHEVSRLYGDTIKA 743

Query: 758 NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFT--------LPE 798
           + S  +T  +              E L    Q+F  G I H  L+ +          +  
Sbjct: 744 SVSRFETFNQCAFKHFANHGLRLKERLPYQFQSFQLGNIFHDALRHLSEKFKDQVLQVDA 803

Query: 799 HKRKNFITSYCTK------NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE---V 849
               + I  Y            L+    Y+ ++  I  +L     T       YS     
Sbjct: 804 AVIASEIDDYLKASLPSVHYEVLYSKHYYQYIVKQIRTIL-LSTFTAIQRQTKYSNFKMA 862

Query: 850 SVSGKINCPK------------KDIIISGRIDQISI----SQQNIFIFEYKTHHHVPQEI 893
               K                 K I I+G+ID+I I     +  + I +YK+      ++
Sbjct: 863 RFETKFGKGGALDTQIYRFGKNKKIEITGQIDRIDILPSPEKDYVRIIDYKS-RQTDLDL 921

Query: 894 EHIPYTHIAQLSIYEKIL 911
           + + Y    Q+  Y  ++
Sbjct: 922 KQVYYGLQMQMLTYMDVV 939


>gi|154246977|ref|YP_001417935.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154161062|gb|ABS68278.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 608

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/503 (11%), Positives = 139/503 (27%), Gaps = 91/503 (18%)

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F D       LL   D    +R  +     +I +DE QDTS  QW V+++L         
Sbjct: 163 FAD---RVATLLHGSD---KVRALVSTMYPYITLDEFQDTSADQWRVVQAL--------- 207

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS-T 267
              +  TL A+ D +Q I+ F GA+P+R+   K        +            + RS  
Sbjct: 208 --GANSTLIALADPEQRIFDFIGADPERLNHFKADFAPTVHDLAGD--------NHRSKG 257

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
            +I    + + +     +                                          
Sbjct: 258 TEIALFGNDILTGNFRQKEYQGIGYAPFASNP---------------------------- 289

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                        + + L  ++      ++ +     +          + +LV  +K T 
Sbjct: 290 -----------NQAYASLVGQVLQARKRLVESGRRDWS----------LAILVPTKKMTR 328

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLA--IKDLMALGRFILSQEDDLSFVCMLKSPL 445
           +++ + R       +  + +   +  +      + +  L +          FV ++ S  
Sbjct: 329 MVSDILREPF--GNVPSISHSAAVDMEGPILAAEIIAFLLQKCGHDGSFDEFVELMCSYF 386

Query: 446 --FNFSEDDIFKICTQRHETETVYEYIQKFANCGISK----FQHVIKYIHELIHIAQFCS 499
                +      +       + + ++ +  A    +      Q           +     
Sbjct: 387 HGRGGTAPTKGDMDEAARFRKALSKWNECLAKGRTTPGNSVLQGTFAVHQATAALTFTGD 446

Query: 500 PHDFFTLILG--AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--- 554
           P   +  +         ++      +     L E      +     +  +    + L   
Sbjct: 447 PDADWVSVRDVLDTGACERLKDVAKDVRNVRLLERGTQLRQGLAQDWRDVGRYSNALAIT 506

Query: 555 -EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
            + +            + V +M +H AKG +   V + +   + F  + +     +   N
Sbjct: 507 RQSFVQEHFATAHKPESGVVVMNMHKAKGKQFDEVVIFEGWPKRFKGEIVANPDRIVFGN 566

Query: 614 DDPGIPIWIPQSKSRNNIVSDLI 636
              G+     Q+   +   +   
Sbjct: 567 VHDGVMTQARQNFRVSITRAKAR 589


>gi|254853389|ref|ZP_05242737.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503]
 gi|300763921|ref|ZP_07073917.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes FSL N1-017]
 gi|258606757|gb|EEW19365.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503]
 gi|300515262|gb|EFK42313.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes FSL N1-017]
          Length = 1157

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 78/748 (10%), Positives = 202/748 (27%), Gaps = 169/748 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       +A  I  +               + +D+ +L R   D  ++        
Sbjct: 307  QANNRRAEIEGVAREIRQLTLNG----------YRYQDMAILTRNLGDYDVLCETVME-- 354

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I +  + +  ++ H  I+ + +    IL + + +  F  +     F  +E      
Sbjct: 355  -SYNIPIFIDKKRAMSKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLR 413

Query: 453  --------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIK---YIHELIHIA 495
                          I        E + +Y  I+  +   + +    I+    I+E+  + 
Sbjct: 414  RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLI 473

Query: 496  -------------------QFCSPHDFFTLI------------LGAKKGRQQFISRFGNE 524
                                  + + F   +               +   +  ++R   +
Sbjct: 474  VNPLSTLELNLKKAKTGMEFALALYHFLEQVNAVERLESWRQRAEEQGYLE--LAREHEQ 531

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGL 583
                +   L+  +         L   +  +              + ++V +  +  AK L
Sbjct: 532  AWSAISALLDEFVEVLGEETLDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLL 591

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            +  V+F +     V   +      +     D     +   +  ++NNI            
Sbjct: 592  DMKVIFAIGMNDGVMPLRQKDNGILSDQDRDALRAEVSNLKPSAKNNIG----------- 640

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
              E + L Y  ++  SD+L +   +     K  ++  +   +   F        +     
Sbjct: 641  --EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFKKLSESVYLTDPGL 698

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY-------- 755
            ++  E  +Y  S          + +  K+      +    ++    +  E          
Sbjct: 699  LSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPLSSVWWDAYNSYFENGKESRMAKQVLSS 758

Query: 756  -----------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFN 781
                                     + S ++                  E      Q  +
Sbjct: 759  LYYENKTKPLQEKTAKNLFGETIHASVSRMEKFFSCEFQHFAQYGLKLEERGHFQLQAVD 818

Query: 782  RGLIIHKLLQVIFT------------LPEHKRKNFITS--YCT---KNAKLWPAKEYKNL 824
             G I H  ++ I                +  R+    +  +     ++  L  +K  + +
Sbjct: 819  MGEIFHGAMEWISAELKRNNLDWGSLTDQECRQMAKLAMTFLAPKIQHEILLSSKRMEYI 878

Query: 825  LLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
               + +++     ++       ++  V +                     ++++ GRID+
Sbjct: 879  QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKISLQANSELLLQGRIDR 938

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL 923
            I  +  +    + I +YK+  H    +  + Y    Q+  Y  I+         K+    
Sbjct: 939  IDMAEQEDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPA 997

Query: 924  --LIYVSEPKVF----IIPQNKLNKAFA 945
              L +    +       +    + K   
Sbjct: 998  GVLYFHMHNQYVQAEKELSDEAIAKELQ 1025


>gi|213613072|ref|ZP_03370898.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 238

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 39/201 (19%)

Query: 506 LILGAKKGRQQFISRFGN---EVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI 561
            ++     R  +    G      I+ L+E +  T +    +    L  L + L       
Sbjct: 1   RVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNDEDEDLMPLQAFLSHAALEA 60

Query: 562 KR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                    + V++MT+H+AKGLE P VF+V     +F  +                   
Sbjct: 61  GEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGW------------ 108

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                                   EE  RL YVG+TRA  +L +          K     
Sbjct: 109 ----------------------RLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKEVYHR 146

Query: 681 WYDMVYDSFHNDERVKKIKLT 701
               + +         +++ T
Sbjct: 147 PSRFIGELPEECVEEVRLRAT 167


>gi|213400887|gb|ACJ47092.1| hypothetical protein [Wolbachia endosymbiont of Cordylochernes
           scorpioides]
          Length = 154

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++    +       +   +L  SFRS  +ILT VD++F+     +       
Sbjct: 1   NPHLFNYMQQYFHTK-----TGWISCQLEKSFRSVPEILTFVDRLFNN---FREEISFVD 52

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
           + I+H   R    G +++W  +    + +    Q   T   D +    +  +LA+ IA+ 
Sbjct: 53  SEIKHVPHRENDQGYIEIWPLLPRSKEEEQQALQIHLTHRKDYV---IADRLLAQAIAHK 109

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           I N +    I    K R I+ +DI++LVR+R 
Sbjct: 110 IHNWLNEGRIL-VAKDRHIEPRDIMILVRQRN 140


>gi|150391867|ref|YP_001321916.1| ATP-dependent nuclease subunit AddB [Alkaliphilus metalliredigens
           QYMF]
 gi|251764575|sp|A6TVN9|ADDB_ALKMQ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|149951729|gb|ABR50257.1| ATP-dependent nuclease subunit AddB [Alkaliphilus metalliredigens
           QYMF]
          Length = 1149

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 66/697 (9%), Positives = 174/697 (24%), Gaps = 147/697 (21%)

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +   S+       +A  I +++           R  +  DI ++          + + +
Sbjct: 306 EIFAGSNLYSEMENVAAQIIHLVRN---------RGYRWNDIALVSGGLDQ---YSMILK 353

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            +  +Y I    +++  + ++  I+ +++    +            LK+   + ++D++ 
Sbjct: 354 RVFEEYHIPYFIDEKRSIMNNPMIELILSSIEILSRGYQYEDVFSFLKTGFSDLTKDEVE 413

Query: 455 KICTQ---------------------------------RHETETVYEYIQKFANCGISKF 481
           ++                                    +   E   E   +     I+ F
Sbjct: 414 QLENYVLQYGIRGKAYSEPFTKGFEKKQIQQKDKEEGEKQIDEEKKEKYNELRMRFIAPF 473

Query: 482 QHVIKYI----------HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV-LD 530
               K I            L    +  +  D     +   +  + F     N  I   + 
Sbjct: 474 AKFEKRIYRKKKIGEITKALFEFMKELNIEDKLNQWIEELREEKYFEYVNENTQIWNKIM 533

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVF 589
           E  +       +  ++L+E    LE      K     +  ++V + ++  +K  +   +F
Sbjct: 534 EIFDQLTEILADESATLKEYGRILEAGFLACKVGVIPSTIDQVLVGSIERSKSHDIKALF 593

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +V     V          ++    +          +   ++++             E   
Sbjct: 594 VVGVNDGVLPFGQEDGGILLDHERESLVKKGISIGTTLESSLL-------------EEQF 640

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           ++Y   ++ ++ L +         K   Q    D     F N      +           
Sbjct: 641 MIYSAFSKPTEYLWVSYALADQEGKAMRQSILIDRFKKLFKNLRIKSDVVNDVDRQLHLI 700

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE---------------- 753
                +  +      +  +          +          +                   
Sbjct: 701 TTPISTFKYMTENIRQNVDDKAMADMWWDVYDWYSKEPTWEDRRKLMVKGLFHQNQITYI 760

Query: 754 -----------PYILNPSTIDTKGKTNLESLLS-DNQTFNR----------GLIIHKLLQ 791
                      P   + S ++          ++   +   R          G + H  ++
Sbjct: 761 GENKAKSLYDNPIKSSVSRLERFANCPFSHFVTYGLRPKERKEYQLSNPDIGRLFHDSME 820

Query: 792 -----------VIFTLPEHKRKNFITSYCTKNAKLWPA-------------KEYKNLLLS 827
                          L + K    +     +    +                  K +   
Sbjct: 821 QFTKEMVNEEIQWKDLTKEKNDELVEKVIDEMVPDFEHGIMLSTHRYQYLVTRLKRISKR 880

Query: 828 ITRLLENPMMTTAMSCDSYSEVSV--SGKIN------CPKKDIIISGRIDQI----SISQ 875
               L + +         + E+     G +          + I + GRID++        
Sbjct: 881 AMWTLTDHVKKGEFVPMGH-EIIFGLEGDVPPIIIELANGEKIYLEGRIDRVDLLNDEED 939

Query: 876 QNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            N   I +YK+       +  + Y    QL +Y   +
Sbjct: 940 GNYVKIIDYKSG-SKEFSLSDVYYGLQIQLMVYLDAI 975


>gi|309805631|ref|ZP_07699673.1| conserved domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165069|gb|EFO67310.1| conserved domain protein [Lactobacillus iners LactinV 09V1-c]
          Length = 258

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 83  NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 135 SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 188

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           K+KN ++DF D+      +L     ++ + R     + + IL+DE QD + +Q ++I+ +
Sbjct: 189 KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 248

Query: 200 TE 201
            E
Sbjct: 249 KE 250


>gi|228990220|ref|ZP_04150189.1| ATP-dependent nuclease, subunit B [Bacillus pseudomycoides DSM
           12442]
 gi|228769503|gb|EEM18097.1| ATP-dependent nuclease, subunit B [Bacillus pseudomycoides DSM
           12442]
          Length = 1176

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 78/723 (10%), Positives = 201/723 (27%), Gaps = 158/723 (21%)

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
           + + +  P ++  +    +L   ++       +A  I  ++  +           + +DI
Sbjct: 301 EAEFESRPSKKFQSEPDITLYTAANLRAEVEGVAREIRRLVAEEE---------YRYRDI 351

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VL+R          + + L  DY I    +++  ++ H  I+ + +    I       +
Sbjct: 352 TVLLRN---GESYYDVMKTLFTDYDIPHFIDEKRPMSHHPLIECIRSALEVISGNWRYDA 408

Query: 437 FVCMLKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF----- 481
               +K+ L               D+    C         +   + +             
Sbjct: 409 IFRCIKTELLYPLDVRKESMHEEMDEFENYCLAYGVQGKRWTADEPWTYRRYRSLDGVNG 468

Query: 482 ------QHVIKYIHELIHIA-------------------QFCSPHDFFTLI-----LGAK 511
                 + + + I+ L  +                       + + F   +     L   
Sbjct: 469 MQTDSEREMEEKINRLRDVVRTPIIRLQKRLKRASSVVQMCEAVYLFLEELDVPKKLEDL 528

Query: 512 KGRQQ-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           + R +       +   ++V + +   L+  +        S    I  +      ++ A+ 
Sbjct: 529 RMRAEAEGNFLFASDHDQVWEEVMNLLDTFVEMLGEEKMSRSMFIDVMTTGLEALQFANI 588

Query: 567 ANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               ++V I  +  ++  +    F++     +                 D G+     + 
Sbjct: 589 PPSLDQVLIANIDRSRLSDIRAAFVIGANEGIIPAAPS-----------DEGMLSDEERE 637

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                 V   +    + T  E   ++Y  +TRAS++L I         K     ++   V
Sbjct: 638 FLVTAGVE--LAPTTRQTLLEEQFVIYQTVTRASEKLYISCPLADEEGKTLLSSSFIKKV 695

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ------LMDEQKI 739
              F + + V      N +++   I+Y  +     +   ++ +  K+      L     +
Sbjct: 696 KRMFPSVKEVFVTNDVNDLSRQVQISYVATPEVTLSYVTQQLQNWKRYGFEGNLDFWWDV 755

Query: 740 PKKLFSPIKNDINEPYIL---------------------------NPSTIDTKGKTN--- 769
                +  +       +L                           + S ++   +     
Sbjct: 756 YNFYVTSPEWKQKSSRVLSSLFYRNRAQKLSSVVSRDLYGDKIKGSVSRMELFNRCAYAH 815

Query: 770 --------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT---SYCTKNAKLWPA 818
                    E  +      + G + H  L+ I      + + +       C   + +   
Sbjct: 816 FAQHGLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSAVVIE 875

Query: 819 KEYKNLLLSIT----------RLLENPMMTT--AMSCDSYS----EVSVSGKINCPKKDI 862
           +    L   I           + L+  +  T   +   + S     V +           
Sbjct: 876 EIAPLLQRQILLSSNRNYYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGS 935

Query: 863 I--------------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           +              + GRID++  ++      + I +YK+      ++  + Y    Q+
Sbjct: 936 LPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-TKALDLTEVYYGLALQM 994

Query: 905 SIY 907
             Y
Sbjct: 995 LTY 997


>gi|260575781|ref|ZP_05843777.1| double-strand break repair protein AddB [Rhodobacter sp. SW2]
 gi|259021934|gb|EEW25234.1| double-strand break repair protein AddB [Rhodobacter sp. SW2]
          Length = 979

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/430 (9%), Positives = 109/430 (25%), Gaps = 56/430 (13%)

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           AQ  +  +            + ++ + G   +  + E           + +  ++L   +
Sbjct: 489 AQHLALTEALARGPAGLGTGELWLKKPGEAALAAVQELAREAPYGGDLTPADYRDLFEAI 548

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   R    +H ++ I     A+   + +V L      ++         +   +  
Sbjct: 549 LAKGE--VREDVQSHPQIMIWGTLEARVQGADLVILGGLNDGIWPQMPPPDPWLNRQMRQ 606

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
              + +   +     +     I                     A+ ++++   +  +  +
Sbjct: 607 KAALLLPERRIGLSAHDYQQAI---------------------AATEVVLTHATRNAEAE 645

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTN-SINKDEWIAYEWSTHHPENTPLEREETIKQL 733
               R    +         +     L         W+    +   P  T         + 
Sbjct: 646 TVPSRWLNRLQNLLRGLPGQGGPQALAAMQARGATWLRLAEALETPAATVPAANRPAPRP 705

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
             E +  +   + I+  I +PY +   TI       L+ L        RG ++H +LQ  
Sbjct: 706 PVEARPAQLAVTGIRTLIRDPYAIYARTI--LRLKKLDPLRQTPDARLRGSLLHAILQRF 763

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM------------ 841
                 + +        + +    A++                                 
Sbjct: 764 VQERPAETRAEARLRLLEISDQVMAEQAPWPAARALWRARLERAADFFLAADAAQGGTSV 823

Query: 842 -----SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
                   + + +  +              RID +      + I +YKT     ++ +  
Sbjct: 824 ILESGGAIALAPLPFNLTAKPD--------RIDAL--PDGRLHILDYKTGTPPTEKQQAQ 873

Query: 897 PYTHIAQLSI 906
                 QL +
Sbjct: 874 FEK---QLLL 880


>gi|254974591|ref|ZP_05271063.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-66c26]
 gi|255091982|ref|ZP_05321460.1| ATP-dependent nuclease subunit B [Clostridium difficile CIP 107932]
 gi|255313716|ref|ZP_05355299.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-76w55]
 gi|255516398|ref|ZP_05384074.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-97b34]
 gi|255649497|ref|ZP_05396399.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-37x79]
 gi|260682664|ref|YP_003213949.1| ATP-dependent nuclease subunit B [Clostridium difficile CD196]
 gi|260686263|ref|YP_003217396.1| ATP-dependent nuclease subunit B [Clostridium difficile R20291]
 gi|260208827|emb|CBA61745.1| ATP-dependent nuclease subunit B [Clostridium difficile CD196]
 gi|260212279|emb|CBE03028.1| ATP-dependent nuclease subunit B [Clostridium difficile R20291]
          Length = 1155

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 107/917 (11%), Positives = 247/917 (26%), Gaps = 204/917 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   +E    +   +D         D+L        +   +D     + IDE    +  Q
Sbjct: 164 IYNSFEGKLHE-NYVD-------AQDMLTSLASKIELSSYLDG--ACVYIDEFTGFTPNQ 213

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + VI+S+           S    +    D+   I     ++     R K    K      
Sbjct: 214 YNVIKSIL--------NKSKSVNISLTVDD---INYIGYSKSDMFSRTKFTYSKLTQLCN 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           ++   I   ++         +   V    E  + L                    ++ + 
Sbjct: 263 EEGIKILPQVN---------LNTGVIKRFEKVKELQH------------------LERFY 295

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +      + +   +          IA  I +++           + ++
Sbjct: 296 NAYPYKIYSNPTENIKIKEFNNLYSEVEE-------IAREIVHLVRD---------KNVR 339

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +  R   D     FL   + N+Y I    + +     +  +  +++       + 
Sbjct: 340 YRDITIATR---DLNRYDFLVHSIFNEYNIPNFIDKKREAKSNPIVILIISALEMKNRRY 396

Query: 433 DDLSFVCMLKSPLFNFSEDDI-----------------FKICTQRHETETVYEYIQKFAN 475
              +    LKS L     DDI                 F        T+++     +F  
Sbjct: 397 GYETMFRYLKSGLIGIDNDDINLLENYVLANGIKGKKWFDEKWDYRITQSLSGQESEFEL 456

Query: 476 CGISKFQHVIKY---------------------IHELIHIAQFCSPHDFFTLILGAKKGR 514
               K   +                           +       +  +    ++   K +
Sbjct: 457 ELKEKINEIKNRVLEPIVILQEKLRGKNRVKEICRYIYEFLLDINMPETIENLIVNFKDK 516

Query: 515 QQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEV 572
            +  ++   ++V D++ + L+  +    +   SL++ I  +       +        ++V
Sbjct: 517 GELDVANQYSQVWDIVVDILDQMVELMGDEIISLEKFIKLITLGFDEYELGLVPPSIDQV 576

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            + +V   K  ++  ++LV T   VF         +  +  +  G         S+    
Sbjct: 577 LVSSVDRMKNPDTKYLYLVGTTDGVFPLITKDSGILSDNDRESLGNKGIEVDIDSKTRSF 636

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                        E   L+Y  +T  S  L I    +    K          +   F N 
Sbjct: 637 -------------EEQFLVYKALTSTSKNLTITYPISDHEGKTLRPSIIISRLKKIFPNI 683

Query: 693 ERVKKIKLTN-SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
           E    +   N S +KD        +          +       + ++I        +  +
Sbjct: 684 ENKSYLVEENKSTDKDILKKITVKSPTFNELINVIKNYDSDDYNTEEINSIWLDIYRYYL 743

Query: 752 NEPYI---------------------------------LNPSTIDTKGKTNLESLLS-DN 777
            +                                    L+ S ++   +      +    
Sbjct: 744 KDEIYSSITKKVIKGLSYTNQVHKIEEKKIRSLYKSNSLSISRLEKYAECPFAYFIQYGL 803

Query: 778 QTFNR----------GLIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLW-------- 816
           +   R          G  IH +L              ++    Y      +         
Sbjct: 804 KAKKRKEYSFTPPDLGTFIHNILDRFSKELLQDNLTWRDIDEKYIELKIGIIVDEIILKI 863

Query: 817 ------PAKEYKNLLLSITRLLENPM--MTTAMSCDSYSEVSVSGKINCPKK-------- 860
                  ++ YK L   +  +L   +  ++  +   S+  +    K     K        
Sbjct: 864 PGYILNSSERYKYLAYRLKNMLTTAITIISQQIKQGSFEPIDYEVKFGDNGKYPPIKMVL 923

Query: 861 ----DIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
               ++ + G+ID++   ++     I I +YK+  +    +  I Y    QL +Y   + 
Sbjct: 924 ENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG-NKSISLTEIYYGLQLQLLVYLDAIL 982

Query: 913 DSYPNKSLV---CLLIY 926
           +S  ++ +      ++Y
Sbjct: 983 ESAKDEDININPAAILY 999


>gi|167762567|ref|ZP_02434694.1| hypothetical protein BACSTE_00923 [Bacteroides stercoris ATCC 43183]
 gi|167699673|gb|EDS16252.1| hypothetical protein BACSTE_00923 [Bacteroides stercoris ATCC 43183]
          Length = 1602

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 59/140 (42%), Gaps = 22/140 (15%)

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             + D +D++     ++ + +V      K       ++IDE QD    +++++ +L     
Sbjct: 1145 NLEDAKDIVSKAAKMINQGEVEPTKIGK-----TVLVIDEAQDMGKEEYDLVNALI---- 1195

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                 ++    + AVGD+ Q+IY F G+  + + R  +  + +          IE+  ++
Sbjct: 1196 ----ANNEEMRVIAVGDDDQNIYEFRGSNSQYMYRLTQNPESKF---------IEMTENY 1242

Query: 265  RSTADILTVVDKVFSIPENA 284
            RST  ++   ++        
Sbjct: 1243 RSTHHLVNFANEFAKNIGKR 1262


>gi|229133699|ref|ZP_04262525.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST196]
 gi|228649734|gb|EEL05743.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST196]
          Length = 700

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 467 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 515

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 516 --IEDWGAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPV 565

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +                +  D           A     
Sbjct: 566 FRSGEDVKVIPAEDQFTEVLKTLQHLQTEDVKTIAVIGRT-DDECRDIYEKLTNAGLTVN 624

Query: 352 TISN 355
            I  
Sbjct: 625 VIEA 628


>gi|254825169|ref|ZP_05230170.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194]
 gi|255519746|ref|ZP_05386983.1| ATP-dependent deoxyribonuclease (subunit B) [Listeria monocytogenes
            FSL J1-175]
 gi|293594412|gb|EFG02173.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194]
          Length = 1157

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 78/748 (10%), Positives = 202/748 (27%), Gaps = 169/748 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       +A  I  +               + +D+ +L R   D  ++        
Sbjct: 307  QANNRRAEIEGVAREIRQLTLNG----------YRYQDMAILTRNLGDYDVLCETVME-- 354

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I +  + +  ++ H  I+ + +    IL + + +  F  +     F  +E      
Sbjct: 355  -SYNIPIFIDKKRAMSKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLR 413

Query: 453  --------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIK---YIHELIHIA 495
                          I        E + +Y  I+  +   + +    I+    I+E+  + 
Sbjct: 414  RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLI 473

Query: 496  -------------------QFCSPHDFFTLI------------LGAKKGRQQFISRFGNE 524
                                  + + F   +               +   +  ++R   +
Sbjct: 474  VNPLSTLELNLKKAKTGMEFALALYHFLEQVNAVERLESWRQRAEEQGYLE--LAREHEQ 531

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGL 583
                +   L+  +         L   +  +              + ++V +  +  AK L
Sbjct: 532  AWSSISALLDEFVEVLGKETLDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLL 591

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            +  V+F +     V   +      +     D     +   +  ++NNI            
Sbjct: 592  DMKVIFAIGMNDGVMPLRQKDNGILSDQDRDALRAEVSNLKPSAKNNIG----------- 640

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
              E + L Y  ++  SD+L +   +     K  ++  +   +   F        +     
Sbjct: 641  --EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFKKLSESVYLTDPGL 698

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY-------- 755
            ++  E  +Y  S          + +  K+      +    ++    +  E          
Sbjct: 699  LSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPLSSVWWDAYNSYFENGKESRMAKQVLSS 758

Query: 756  -----------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFN 781
                                     + S ++                  E      Q  +
Sbjct: 759  LYYENKTKPLQEKTAKNLFGETIHASVSRMEKFFSCEFQHFAQYGLKLEERGHFQLQAVD 818

Query: 782  RGLIIHKLLQVIFT------------LPEHKRKNFITS--YCT---KNAKLWPAKEYKNL 824
             G I H  ++ I                +  R+    +  +     ++  L  +K  + +
Sbjct: 819  MGEIFHGAMEWISAELKRNNLDWGSLTDQECRQMAKLAMTFLAPKIQHEILLSSKRMEYI 878

Query: 825  LLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
               + +++     ++       ++  V +                     ++++ GRID+
Sbjct: 879  QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKISLQANSELLLQGRIDR 938

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL 923
            I  +  +    + I +YK+  H    +  + Y    Q+  Y  I+         K+    
Sbjct: 939  IDMAEQEDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPA 997

Query: 924  --LIYVSEPKVF----IIPQNKLNKAFA 945
              L +    +       +    + K   
Sbjct: 998  GVLYFHMHNQYVQAEKELSDEAIAKELQ 1025


>gi|86159691|ref|YP_466476.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776202|gb|ABC83039.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 607

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 20/138 (14%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            D       +L+       +   + +    +++DE QDTS +Q  ++  L          
Sbjct: 184 SDAAYWAVRVLESFPE---VAKALVRRFPEVVVDEAQDTSEMQMRILDLLVGAGL----- 235

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF-SIIELPLSFRSTA 268
               + +  VGD  QSIY +  A P+         +++A+     +    EL  S R++ 
Sbjct: 236 ----QEIVLVGDPDQSIYEWRAAHPEL-------FERKASGKELDWDHRSELTESRRNSQ 284

Query: 269 DILTVVDKVFSIPENAQG 286
            I        ++   A+G
Sbjct: 285 QICNAAQPFSTLASAARG 302


>gi|192823972|ref|YP_001994618.1| gp71 [Mycobacterium phage Jasper]
 gi|190610567|gb|ACE80086.1| gp71 [Mycobacterium phage Jasper]
          Length = 274

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 59/225 (26%), Gaps = 51/225 (22%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVI----- 793
            +N   E    + S +    K      L+ ++           +G  +H + +       
Sbjct: 8   TRNYTYEKKPRSVSQLSQFDKCPFSWKLARHERVWKRPAAWLQQGTGVHAVAEKYMLSKL 67

Query: 794 ---------------------FTLPEHKRKNFITSYCTKNAKLWPAKEYK-----NLLLS 827
                                      +  N    + +   +     E +       +  
Sbjct: 68  AGSPLTREECYEIFKAEYADGINEATEETPNLGWWFASGPYRGADDIERRWGIGLQQVDK 127

Query: 828 ITRLLE-NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
               ++ +P +    + D      +   I      I I G ID + +    + + ++K+ 
Sbjct: 128 TLDWIDNHPSLEVWHTPDGTP--GIELAIEFELDGIEIRGYIDAVLVLDGEVQVVDWKSG 185

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
                +          QL++Y   LK  Y  +    +       K
Sbjct: 186 AKPGDD---------FQLAVYALALKQLYGVEITRGVYFMAKTGK 221


>gi|172040717|ref|YP_001800431.1| RecB family exonuclease [Corynebacterium urealyticum DSM 7109]
 gi|171852021|emb|CAQ04997.1| putative RecB family exonuclease [Corynebacterium urealyticum DSM
           7109]
          Length = 275

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 68/234 (29%), Gaps = 42/234 (17%)

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLP 797
           P      +   L+PS      +  L                   +G ++H +L+ +  LP
Sbjct: 8   PQPKVSLDRLALSPSRAGDYQQCPLLYRFRSIDKLPEPKTIAQVKGTLVHAVLEELHALP 67

Query: 798 EHKR---------KNFITSYCTKNAKLWPAKEYKNLLLSITRL---------LENPMMTT 839
             +R         K        K+A L      + L   +            +ENP    
Sbjct: 68  REQRTYPVAVKMLKPAWAKMVDKDADLNELVPDEQLYDFLVEARLLVKGYFQMENPQG-- 125

Query: 840 AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPY 898
                   E  V   +      + + G ID++ + +   + + +YKT    P        
Sbjct: 126 -FDAHE-VEEFVEATLP---NGVPVRGFIDRVDVAANGQVRVVDYKTGKKPPPRFAAQA- 179

Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII---PQNK--LNKAFAEI 947
             + Q+  Y  +    Y        L+Y+      ++   P       +   E+
Sbjct: 180 --LFQMKFYALVYWRLYDLIPAQLRLMYLKVADDLVLQPTPAELQYFERDLREL 231


>gi|150401932|ref|YP_001329226.1| UvrD/REP helicase [Methanococcus maripaludis C7]
 gi|150032962|gb|ABR65075.1| UvrD/REP helicase [Methanococcus maripaludis C7]
          Length = 627

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 24/163 (14%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y + K  N ++  +++++  + L +K D+   I   +  +   I +DE QDT+    
Sbjct: 130 YKEYIQMK--NGIISHDEVLVLAHHLFEKHDLLCNI---LKDKFKFIFLDEYQDTN---- 180

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
              + + E         +  + +   GD  QSIY     + K  +               
Sbjct: 181 ---KLVIEILLKHLKKCNKEQIIGFFGDSMQSIYDDGIGDLKDYV------------NSG 225

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           +   + L  + R+   ++ + +K+ +     +  ++ +   ++
Sbjct: 226 EVKEVVLNQNRRNPKLVIDLANKLRTDNVIQEPSNDINAPNMK 268


>gi|254438249|ref|ZP_05051743.1| double-strand break repair protein AddB [Octadecabacter antarcticus
           307]
 gi|198253695|gb|EDY78009.1| double-strand break repair protein AddB [Octadecabacter antarcticus
           307]
          Length = 977

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/560 (11%), Positives = 149/560 (26%), Gaps = 61/560 (10%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            ++T       + + I+   +    L      + L  +        D    + +L+ PL 
Sbjct: 354 RMLTRQVTAALDRWDITPDDSAGLPLQLTAPGRFLRHIADLFCEPLDAERLLVLLRHPLC 413

Query: 447 -------NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC- 498
                      + +     +        E +  +A+    K    + ++H +        
Sbjct: 414 NSERGNHGLHTNALELEVRRNGPPFPTDESLTNWADGTKDKHPDRVAWVHWIGATLLNLK 473

Query: 499 --SPHDFFTLILGAKKGRQQFISRFGNEVIDVLD---------EFLNFTLRNEQNSYSSL 547
              PH+  T +    K  ++  +    +    L            ++    +        
Sbjct: 474 DPRPHELGTFLDEHVKISERLAAGPNTDGSGELWKKGAGREAFRLMSELRTHADAGGVMT 533

Query: 548 QELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
                +L          R     H +V I     A+   + +V L       +       
Sbjct: 534 ARDYRQLVGSTLADGEDRDRDQGHPQVLIWGTLEARVQSADLVILAGLNEGTWPETPTPD 593

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             +   L    G+ +   +     +     +                      + ++++ 
Sbjct: 594 PWLNRPLRMRAGLLLPERRIGLSAHDYQQAV---------------------CAREVVLS 632

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN-SINKDEWIAYEWSTHHPENTPL 724
           +   +   +    R    +       DE+     L         W+    S   P  T  
Sbjct: 633 RAVRSDEAETVPSRWINRLTNLLGGLDEKGGPAYLDAMRERGQHWLTLTASIAAPPFTVD 692

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
                      + +  +   + IK  I +PY +        G  +L+SL        RG 
Sbjct: 693 PAPRPSPCPPTDVRPDRLSVTQIKTLIRDPYAIY--ARKILGLNSLDSLAHTPDAPLRGT 750

Query: 785 IIHKLLQVI------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR----LLEN 834
           I+HK+L+         T           +      +             I       L  
Sbjct: 751 IVHKVLERFVKANIDPTNAGAAGALLAIATDVLEERCPWPAVRALWFARIASFTPHFLAE 810

Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEI 893
                A S +  +E+   G++        ++G  D+I +S      I++YKT        
Sbjct: 811 EQKRRAYSANVDTEIR--GELKLANLPFTLTGTADRIDMSNDGEALIYDYKTGKTPSPAQ 868

Query: 894 EHIPYTHIAQLSIYEKILKD 913
           +        QL +   +++ 
Sbjct: 869 QKYFDK---QLLLEAAMVER 885


>gi|312129740|ref|YP_003997080.1| hypothetical protein Lbys_0997 [Leadbetterella byssophila DSM
           17132]
 gi|311906286|gb|ADQ16727.1| hypothetical protein Lbys_0997 [Leadbetterella byssophila DSM
           17132]
          Length = 901

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/569 (10%), Positives = 144/569 (25%), Gaps = 74/569 (13%)

Query: 379 LVRKRKDTPLITFLTRFLKNDYKI--------SVVGNDRFILTDHLAIKDLMALGRFILS 430
           LVRK   +     +   +               +  +    L     +  +  L      
Sbjct: 288 LVRKSSSSSHAVVILDEMDLPSIYTLVPGLDMKINISGGMSLKSSELMAAINLLLDISDQ 347

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
           ++  L  + ML          ++ K   +  + E +     +                 E
Sbjct: 348 EKLRLEDLRMLMEQPL---IRELVKGEVEWTKLERLAYKSTRLFYEREDLKMSQGSLWDE 404

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           ++ + +  S       IL      +            VL E  +     + +  +     
Sbjct: 405 IVGMTEVGSFVRGVERILKT---VEALEWNEKPFAQLVLKELPSVKRHLDVSKPAFRLLF 461

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              L+      ++  +A   +V+IM++   + L+   V  +          +     +  
Sbjct: 462 QEFLKGLSLPFEKEPNA---KVQIMSMLETRCLDFDEVTFLSFVEGKLPTANKSNSFLPF 518

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
               +  +P +       +          +   + E   +LYV                 
Sbjct: 519 DAILEFKLPTYS------DQDAIMAYHFYRLLQRAEKVNILYVQQG---------GSGVG 563

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
             EK        + +      D ++K      ++               E     ++   
Sbjct: 564 RQEKSRFIYQIEEELCRDPKVDGKIKFSTTEINLGDLVKPKEITIPKTDEILEKAKDYFT 623

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
            + +    + +   SP+         +  + +D                   G +IH  L
Sbjct: 624 NRGLSATALSEYFTSPLAFYWKYLEGIRENNMDEATI----------GANVFGTLIHYAL 673

Query: 791 QVIF------TLPEHKRKNFITSYCTKNAKLW----PAKEYKNLLLSITRLLENPMMTTA 840
           +         ++ +   +           +L     P  ++   L ++ + +   ++   
Sbjct: 674 EKADLPYVGKSITKEDLEAQKLWVIKNFDQLIQECKPEFDFSYGLNAVLKKVALDLLIKY 733

Query: 841 MSCDSYS----------EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
                 +          E      ++     + + G ID++      + I +YKT     
Sbjct: 734 YHMRIRTYTEPFTIVALEKKFRKILDIGGIKLKVEGAIDKLEKHGDTLVIIDYKTGKVED 793

Query: 891 QEI---------EHIPYTHI---AQLSIY 907
                       E +         QL +Y
Sbjct: 794 VTYTHNPEVSFTEELKERKRDKFRQLLLY 822


>gi|229084225|ref|ZP_04216509.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-44]
 gi|228699103|gb|EEL51804.1| ATP-dependent nuclease, subunit B [Bacillus cereus Rock3-44]
          Length = 1165

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 80/722 (11%), Positives = 198/722 (27%), Gaps = 157/722 (21%)

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
           + + +  P ++  +    +L   ++    A  +A  I  ++  +           + +D+
Sbjct: 290 EAEFESRPSKKFQSEPDITLYTAANLRAEAEGVAREIRRLVAEE---------GYRYRDV 340

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VL+R          + + L  DY I    +++  ++ H  I+ + +    I       +
Sbjct: 341 AVLLRN---GESYYDVMKTLFTDYDIPHFVDEKRPMSHHPLIECIRSALEVISGNWRYDA 397

Query: 437 FVCMLKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF----- 481
               +K+ L               D+    C         +   + +             
Sbjct: 398 VFRCIKTELLYPLDVRKESMREEMDEFENYCLAYGVQGKRWTADEPWTYRRYRSLDGAGT 457

Query: 482 -----QHVIKYIHELIH-------------------IAQFCSPHDFFTLI-----LGAKK 512
                + + + I+ L                     +    + + F   +     L   +
Sbjct: 458 QTDSEREMEEKINRLRDVVRTPIIRLQKRFKRATSVMQMCEAMYLFLEELEVPKKLEDLR 517

Query: 513 GRQQ-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
            R +       +   ++V + +   L+  +        S    I  +      ++ A+  
Sbjct: 518 MRAEAEGNFLFASDHDQVWEEVMNLLDTFVEMLGEEKMSRAMFIDVITTGLEALQFANIP 577

Query: 568 NH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
              ++V I  +   +       F++     +                 D G+     +  
Sbjct: 578 PSLDQVLIANIDRTRISNVRAAFVIGANEGIIPAAPS-----------DEGMLSDEERES 626

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                V   +    + T  E   ++Y  +TR S++L I         K     ++   V 
Sbjct: 627 LATAGVE--LAPTTRQTLLEEQFVIYQTVTRVSEKLYISCPLADEEGKSLLSSSFIKKVK 684

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL--- 743
             F + + V      N +++   I+Y  +     +   ++ +  K+   E  +       
Sbjct: 685 RMFPSVKEVFITNDVNDLSRQAQISYVATPEVTLSYVTQQLQNWKRYGFEGNLDFWWDVY 744

Query: 744 ---------------FSPIKNDINEPYILNP---------------STIDTKGKTN---- 769
                                  N    L+P               S ++   +      
Sbjct: 745 NFYVTSPDWQQKSSRVLSSLFYRNRAQKLSPVVSRDLYGDKIKGSVSRMELFNRCAYAHF 804

Query: 770 -------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT---SYCTKNAKLWPAK 819
                   E  +      + G + H  L+ I      + + +       C   A +   +
Sbjct: 805 AQHGLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLAAVVIEE 864

Query: 820 EYKNLLLSIT----------RLLENPMMTT--AMSCDSYS----EVSVSGKINCPKKDII 863
               L   I           + L+  +  T   +   + S     V +           +
Sbjct: 865 IAPLLQRQILLSSNRNHYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGSL 924

Query: 864 --------------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
                         + GRID++  ++      + I +YK+      ++  + Y    Q+ 
Sbjct: 925 PPMEFTLANGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-TKALDLTEVYYGLALQML 983

Query: 906 IY 907
            Y
Sbjct: 984 TY 985


>gi|39938991|ref|NP_950757.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722100|dbj|BAD04590.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 873

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 24/151 (15%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y E      ++ F+ L+I T+D ++  + +  + Y        + IDE QD +   
Sbjct: 185 LLNLYYEKLNYYNLITFDGLLIETSDFIEFVERNNGLIYN-----RLVFIDEFQDLNYFY 239

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + +I+ L           + P +L+  GD  Q+IYS  G+  + +    +          
Sbjct: 240 YFIIKELL---------FNKPNSLYCFGDYTQNIYSSFGSSERILELFVKDF-------- 282

Query: 253 QKFSIIELPLSFRSTA-DILTVVDKVFSIPE 282
            K     L +++RS   +I+   +++    E
Sbjct: 283 -KPEKHFLNVNYRSKGINIVKAANELIDNKE 312


>gi|326387826|ref|ZP_08209432.1| helicase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207872|gb|EGD58683.1| helicase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 998

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/469 (10%), Positives = 122/469 (26%), Gaps = 44/469 (9%)

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            L+ P      D + +   +    E       + A   ++      + +     +A    
Sbjct: 464 ALRGPRPGPGLDGVGEALQRARYLERDLIAWWESATALLAPLLAHAEPLPLADALAH--- 520

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             +    + G     +         V D      +  L       + L  L+   +    
Sbjct: 521 LVEAAERLCGEAIWAEADGRALAAFVEDWSGAAGDARLAGVLVDPAELPALLR--DAIDQ 578

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
              R     H+ + I  +  A+   + +V         +         + P++    GIP
Sbjct: 579 VAVRPPYGGHSRLAIYGLLEARMNRADLVICAGLNEGTWPTAPSADPVLAPAVLRALGIP 638

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
               +     +  +  +                      S ++++      +       R
Sbjct: 639 GPDFRIGLAAHDFAAAL---------------------GSPEVVLSHALRDAAGPAVPSR 677

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                +        +  + +             +   H P   P+   E  +  +    +
Sbjct: 678 F----LLRIRAMLGQSIQTETAAIEWASALDQADPVPHSPRPRPMPSAEQRRVDIAATAL 733

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
            +    P +   +    L+          +L+ L +D     RG  +H +L+        
Sbjct: 734 DRLRGDPYQFYASAILRLS----------SLDPLDADPTPAWRGTAVHAILEAWHKAGAP 783

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-PMMTTAMSCDSYSEVSVSGKINCP 858
             +  + +    +A              +   LE        ++ +  +  +     +  
Sbjct: 784 PGQLIVLAREALDAMSAHPLMRALWTPRLIEALEWIEEEQARLAGEGRTVAAFEQWGDIT 843

Query: 859 KKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            + + I GR D+I         I +YKT          +      QL +
Sbjct: 844 VRGVKIKGRADRIDRLPDGTLAIVDYKTGSPP--SPTMVAEGFALQLGL 890


>gi|293402085|ref|ZP_06646224.1| hypothetical protein HMPREF0863_02365 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304477|gb|EFE45727.1| hypothetical protein HMPREF0863_02365 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 676

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 70/584 (11%), Positives = 155/584 (26%), Gaps = 131/584 (22%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y + K K  + D++D++    ++L K  V   +   + +  + + +D+ Q+ S +
Sbjct: 176 ALYKEYAKFKDKKDIYDYDDILAVATEILVKDTV---LLEDVKKHCHFVHVDDAQELSFL 232

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
              +++ ++          SS   LF   D   SI     A P+ +    +         
Sbjct: 233 AHMLLKMVS----------SSTHELFLCADMDVSIAQHRAAYPQALDAFTQTY------- 275

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                I+    ++R+ A I    ++ +   +         T  ++ +       G   L 
Sbjct: 276 -TNGEILTRNGNYRNNATITDACNRFYYKDKEGLQSISQETCELKFK-------GFADLS 327

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
           +          + ++ ++                                          
Sbjct: 328 KLYAYALKKVEDEEETAFL----------------------------------------- 346

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILS 430
              D  + V               L  +  IS               ++D+      ++ 
Sbjct: 347 -YHDFAMAVP-----------LIELFKEKGISFSYQGNMKHFLQDKFVRDMWNFIELLID 394

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
             D  +F  + ++   + S+  + ++  +    E V  Y     +      +  +  + E
Sbjct: 395 PRDMRAFYEVYEAMGLDISKRVLLEVSERLKADEAVDVYQALMESSYKQAGKKKLASLME 454

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
            I +A+  S  D    I       +            V+  F     R E        + 
Sbjct: 455 RIRMAENKSTLDMVIFIKEKMGYNETLRKEGIAMNAPVILAFEILAQRYE--------DP 506

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              L                 + I ++  AKG E   V ++D    +   K         
Sbjct: 507 DEFLYHLGALKDYQADPIS-RITICSLGDAKGYEYDRVCILDCIRGILPQK--------- 556

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                             ++   L Y GMTRA  +L        
Sbjct: 557 -------------------------------EDSQKERMLFYHGMTRAKHELEFLASKRC 585

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           +  +       Y++         +      T +  K    + + 
Sbjct: 586 TTHRLEISPYLYELHEKMEEEKRKETATVATPTAKKLRPTSLKR 629


>gi|157786545|ref|YP_001491721.1| gp69 [Mycobacterium phage Bethlehem]
 gi|40769484|gb|AAR89790.1| gp69 [Mycobacterium phage Bethlehem]
          Length = 266

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 54/224 (24%), Gaps = 61/224 (27%)

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFTLPEHKRKNF 804
           E    + S +    K      L+ ++           +G  +H + +             
Sbjct: 6   EKKPRSVSQLSQFDKCPFSWKLARHERVWKRPAAWLQQGTGVHAVAEKYILSKLAGSPLT 65

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS----------------- 847
                          EY + +   T   E P +    +   Y                  
Sbjct: 66  REECYEIF-----KSEYADGINEATE--ETPNLGWWFASGRYRGQEDIERRWDIGLQQVD 118

Query: 848 ------------EVS--------VSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
                       EV         +   I      I I G ID + +    + + ++KT  
Sbjct: 119 KTLDWIDNHPSLEVWHTPDGTPGIELAIEFELDGIEIRGYIDAVLVLDGEVLVVDWKTGL 178

Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
               +          QL++Y   LK  Y  +    +       K
Sbjct: 179 KPGDD---------FQLAVYALALKQLYGVEITRGVYFMAKTGK 213


>gi|163940561|ref|YP_001645445.1| UvrD/Rep helicase family protein [Bacillus weihenstephanensis
           KBAB4]
 gi|163862758|gb|ABY43817.1| UvrD/Rep helicase family protein [Bacillus weihenstephanensis
           KBAB4]
          Length = 691

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWGAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +                +  D           A     
Sbjct: 557 FRSGEDVKVIPAEDQFTEVLKTLQHLQTEDVKTIAVIGRT-DDECRDIYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|218885869|ref|YP_002435190.1| hypothetical protein DvMF_0765 [Desulfovibrio vulgaris str. 'Miyazaki
            F']
 gi|218756823|gb|ACL07722.1| conserved hypothetical protein [Desulfovibrio vulgaris str. 'Miyazaki
            F']
          Length = 1100

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/451 (10%), Positives = 120/451 (26%), Gaps = 78/451 (17%)

Query: 555  EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
            E          +     ++++ +   + L    V ++D               +  SL  
Sbjct: 638  ETLREERVPFEATPLAGLQVLGMLETRLLRFRRVIVLDATEDRLPGAPGHDPLLPDSLRA 697

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
              G+P    + +   +    L+   +++                    ++C  +      
Sbjct: 698  MAGLPDSRRRERVAAHNFHRLLAGAEQA--------------------VLCYQTGVDRSG 737

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              +++       +     E   +  L +        A   +     + P   E T     
Sbjct: 738  LLDEKKIRSRFVEELLWREERARGGLLSPGQPPLHAAAC-TVRPFRSAPRPIERTTAIND 796

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ--V 792
              +++     SP   D      +        G    + +   +     G ++HK+L    
Sbjct: 797  ALERLLDAPVSPSTLDAWLTCPVRFFHERLAGLAPPDEVNEGDDPIAVGDLLHKVLLDFH 856

Query: 793  IFTLPEHKRKNFI------TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY 846
            +       R++ +        +  +      + +     L +  +     +   +S    
Sbjct: 857  LPHKGREVRRDELSAEHLTRLFLQRLGASGLSAQLPPDALLMLEVAGPERLGRYLSRQPE 916

Query: 847  S------EVSVSGKINCPKKD----IIISGRIDQI----SISQQNIFIFEYKTHHH---- 888
                   E  V   I+ P         + GR+D++        Q   I +YKT       
Sbjct: 917  RFTVLELEEPVEATIDVPGSAGRRIRRLHGRVDRVDLRDFEDGQGAVILDYKTGKVEWKP 976

Query: 889  ----------------VPQEIEHIPY----THIAQLSIYEKILKDSYPNKSLV--CLLIY 926
                              ++ + +       H  QL  Y  +    +  + +     +I 
Sbjct: 977  SAWSDDALWERIEVWTPDRDPDLLADVAGALHGVQLPAYVHMYGQ-HSGRDVHDAAWVIL 1035

Query: 927  VSEPKVFII-----PQNKLNKAFAEISTKIP 952
                +   +          + A   I+T+IP
Sbjct: 1036 RDAGQELPLFGDGTDDETRDAA---ITTRIP 1063


>gi|251796230|ref|YP_003010961.1| ATP-dependent nuclease subunit B [Paenibacillus sp. JDR-2]
 gi|247543856|gb|ACT00875.1| ATP-dependent nuclease subunit B [Paenibacillus sp. JDR-2]
          Length = 1175

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/685 (9%), Positives = 173/685 (25%), Gaps = 152/685 (22%)

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
               +    ++  ++ +D+ V+VR        T   + + +DY+I    + +     H  
Sbjct: 334 AARDMVRRAREEGLRWRDMAVMVRN---AAEYTDYIQTIFDDYEIPYFLDQKNNTVHHPL 390

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKS----PLFNF-------------------SEDDIF 454
           ++ + +    +L      +    +K+    P+                          + 
Sbjct: 391 VEFIRSALETVLHGWHYEAVFRCIKTELLFPIDGSMSRELFDRLENYVLAAGVDGWKWLD 450

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYI--------------HELIHIAQFCSP 500
           +   +    +++ +     +       +     +                L   +     
Sbjct: 451 RSRWKPFMQQSLEDEPDTVSEPSAKAKREFQAIMAAREAIVPPLRRFEQSLKKASNVKDM 510

Query: 501 HDFFTLILGAKKGRQQFI--------------SRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +    +L       +                +R   ++ D + + L+  +    +    
Sbjct: 511 CEALYKLLDHADAADRLERWSREDSASGRTQRARSHRQLWDGVMQLLDQLVEMVGDEDMP 570

Query: 547 LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            +     +E     +K A      ++  I ++   +  +  + +++     V   +  + 
Sbjct: 571 PELFAGMVETGLENLKLAAVPPALDQALIGSMDRTRSGDVKICYVLGANDGVMPMRIQED 630

Query: 606 MHIMPSLND--DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
             +     +       +  P                 +    +   L+Y  +T AS  L 
Sbjct: 631 GVLTEQERERLAEEGLVMAPGV---------------RRRLLDERFLIYNALTTASQHLW 675

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----RVKKIKLTNSINKDEWIAYEWSTHHP 719
           I         K          V   F          +      + ++  +I +   T   
Sbjct: 676 ISWAQADEEGKTLLPSEVIRQVRQLFPGIPVYQKAGEPTPGMETGDQRSYIEHPQRTLAY 735

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN--------------------------- 752
             T L       ++          F+      +                           
Sbjct: 736 LITELRAWRQGSEIAPFWWDVYNWFAIRPEWQDKLQLMNASLSFSNQETVLTTTTAEQLY 795

Query: 753 -EPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                 + S ++                  E  +   +  + G + H  L  +      +
Sbjct: 796 GTKLKASVSRMERFVSCPFQHFAIHGLRLRERQMYRLEAPDVGQLFHAALSRLAGGVGQR 855

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT--------------AMSCDSY 846
             +   +   + A     +    L   I   L +                    +S  S 
Sbjct: 856 WGSMPEAQIREAAAKAVDELAPRLQSQIL--LSSGRFQYIARKLKEIVAQAAVILSEHSR 913

Query: 847 S--------EVSV-------SGKINCPKKDII-ISGRIDQI--SISQQNIF--IFEYKTH 886
                    EV         S  I       + I GRID++  + +++ +   + +YK+ 
Sbjct: 914 RAQFQPVGLEVDFGPDGTLPSLVIPLDNGGTMEIIGRIDRVDAAETEEGLLLRVLDYKSS 973

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKIL 911
               + +E + +    Q+  Y  +L
Sbjct: 974 ATQLK-LEEVAFGLSLQMLTYLDVL 997


>gi|215405209|ref|ZP_03417390.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis
           02_1987]
 gi|289747016|ref|ZP_06506394.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
 gi|289687544|gb|EFD55032.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987]
          Length = 522

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/456 (10%), Positives = 104/456 (22%), Gaps = 89/456 (19%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS--------FFL 74
               +   +    S +         +    L +   +   +     L +           
Sbjct: 83  RAAIREPVVRTVHSYAYAVLRKAAQRAGDALPRLLTSAEQDAIIRELLAGDAEDGPAATT 142

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T     +  + T     +  +L  +  +       +          +        A    
Sbjct: 143 TWPAHLRPALTTAGFATELRNLLARCAE-----RGLDPLELQQLGRRRGRPEWIAAGQFA 197

Query: 135 AHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             YE+                   L   +L+    +      V   +       +  +L+
Sbjct: 198 QRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFA---VDPELLAAERARVRTLLV 254

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           D+ Q        ++R L     +              GD  Q+++ F G EP  +L    
Sbjct: 255 DDAQQLDPQAARLVRMLAAGTELA----------LIAGDPNQAVFGFRGGEPTGLLA--- 301

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                    G     + L +S R    +   V  +               T     S  +
Sbjct: 302 --DDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRRIEGTGTEVGSVTV 359

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
              G+                                      A   A  I++ +    +
Sbjct: 360 RLAGS--------------------------------------AHAEAAMIADALRRAHL 381

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   +    + V+VR       +               VG     L+   A++ L+
Sbjct: 382 ID-----GVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGG---PLSAEPAVRALL 433

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
            +        D    + +L  P+       + ++  
Sbjct: 434 TVLEATADGLDGDQALLLLTGPIGGVDPVSLRQLRR 469


>gi|121605094|ref|YP_982423.1| exonuclease-like protein [Polaromonas naphthalenivorans CJ2]
 gi|120594063|gb|ABM37502.1| DNA helicase/exodeoxyribonuclease V, subunit B [Polaromonas
           naphthalenivorans CJ2]
          Length = 855

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 67/597 (11%), Positives = 162/597 (27%), Gaps = 80/597 (13%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                +T     +     I++     + L+   A   LM L R +       + +  LK+
Sbjct: 275 AQDRQLTRRVAAMLARRGIAMRDETGWKLSTSRAAASLMGLLRALPWDVSTDAVLDWLKN 334

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                S          R      +  +       ++  Q + + +++L        P   
Sbjct: 335 APAFASGTVTAAETEVRKFGVRAWRDLPAAPLEALAVAQPLARQVNQLRDSLSRPRPLAA 394

Query: 504 ----FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT-LRNEQNSYSSLQELISELEQYP 558
                   L +    +   S    + +  +        +  E      L+E  S + Q  
Sbjct: 395 WLRDLRAALQSAGQWELLASDEAGQRVLDVLRLHEGADIEFEDAPAMKLREFTSWVNQAL 454

Query: 559 PTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                +       +V I+ +    G     V L                   P   +  G
Sbjct: 455 EAQTFSPEHPAAEQVVILPLAQLLGRAMQAVVLPGCDEIRLPVSPEPPGQWTPGQRELLG 514

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
           +P              + +  + +   +   +L +V                        
Sbjct: 515 LP------------SREALARVARQAWDYTLQLPHV------------------------ 538

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                D+++ +    E +        I     +A + +        +    T++ L   +
Sbjct: 539 -----DLLWRTSEAGEHLMPSGFVQEILLSRSLAADRAGDPRRLRAVAACPTLRPLPTGE 593

Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVI 793
            +P +  S                +   G    + L S+    + G  +H LL    + +
Sbjct: 594 ALPVRRLSASSYGDLRACPYRFFALRQLGLHESDELESELGKRDFGNWLHNLLCRFHEAL 653

Query: 794 FTLPEHK---RKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS---- 845
              P H    R   I     + AK       + L   +    + +  +      ++    
Sbjct: 654 KEAPAHDLPARIAMINVAAEQAAKELGLSHSEFLPFAAAWTPVRDGYLAWLAGHEATGAR 713

Query: 846 --YSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIA 902
              +E  +   +     ++ + G+ID++       + + +YKT        E I      
Sbjct: 714 FDMAEQWLDMPL---GSELTLIGKIDRMDRLPGGELLLIDYKT-EPRATTAERIKNGLED 769

Query: 903 -QLSIYEKILK---------DSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIST 949
            QL+ Y  ++          +    +          +P +  +    ++   ++++ 
Sbjct: 770 SQLAFYAALVADDTLGAAYVNLGEKEPTRSY----DQPDIVALRDALIDGILSDMAR 822


>gi|94496823|ref|ZP_01303398.1| hypothetical protein SKA58_16828 [Sphingomonas sp. SKA58]
 gi|94423836|gb|EAT08862.1| hypothetical protein SKA58_16828 [Sphingomonas sp. SKA58]
          Length = 905

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 65/670 (9%), Positives = 161/670 (24%), Gaps = 66/670 (9%)

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           R    IL        + ++      D     R  S+R             + +       
Sbjct: 150 RLEQTILD------KLAQHHGIADADDPDFARLVSARREAAAPADRLVGHIQRGLLARTA 203

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           Q       F  L    S       +A  I   +      S  +  VI         +   
Sbjct: 204 QAMPLDDSFSVLSVRDSLGECEAAVA-IIQRWLRETPEISPAEIAVIVPDGSQHAAQLAG 262

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                  L   L        +G +   L          A+ R  L     + +   L + 
Sbjct: 263 VAQSAGLLLSGLPASASARNIGAETIYLFVQCMNAPAPAMARASLLASPIMPWPRNLGAS 322

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
           +          I +         + +Q     G    +     +  L  +     P    
Sbjct: 323 MARRVMQGRGAITSGVDLGVDGRDLVQLLTGGGAKTNKQFSARLRVLRKLLGPSRPD--- 379

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              +       + +       +   +E                  L +    Y    +  
Sbjct: 380 ---IERDMAEAKRLITLLLRTLATRNE----------EDTPDWGALHATAGTYRLERESR 426

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            +     V ++            + ++      +     +    + S  D+         
Sbjct: 427 GAFYSCGVSVLHSGETPRRRFEKLVVLGYNEGNYPVAAPRNAVFLDSELDEIERAC---- 482

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                 +     + + +     + R L      + + +++C   +   +      +   +
Sbjct: 483 -----GLALPTRRRMLEDGLGRFVRQLSAA---SDEIVLLCAERDGYGKALFPASSLALL 534

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                   +    +          W         PE  P  R     Q      + + L 
Sbjct: 535 ARLVAEVKDPEDLVTSLGRAGTSVWDRLLDWRVPPEFEPQVR----PQPPVHYDLGRNLL 590

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN------------RGLIIHKLLQV 792
               ++   P   +PS ++    + L  +L +    +            RG + H + + 
Sbjct: 591 HLRLDEEGRPRPQSPSRLEKLLVSPLAWILEELDAAHVPWVPEALDVKLRGTLTHGVFER 650

Query: 793 IFTLPEH---------KRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMS 842
           +F   E          +    +      +A       +     ++    +       A+ 
Sbjct: 651 LFKAGETVCNPASIASRVPELLDECIAIDAPFMTGPAWTMERDAMIGDTIRAAEGWAAIL 710

Query: 843 CDSYSE-VSVSGKINCPKKDIIISGRID-QISISQQNIFIFEY-KTHHHVPQEIEHIPYT 899
            +  +E V+    +        + G+ D  + +      I ++ K+     +  + +   
Sbjct: 711 KELDAEVVANEFWLEGEVLGHPVHGKADTLLRLGDGQPVIVDHKKSG--SGKRRQRMEAG 768

Query: 900 HIAQLSIYEK 909
              Q+ +Y +
Sbjct: 769 CDLQVELYRR 778


>gi|296269817|ref|YP_003652449.1| RecB family exonuclease-like protein [Thermobispora bispora DSM
           43833]
 gi|296092604|gb|ADG88556.1| RecB family exonuclease-like protein [Thermobispora bispora DSM
           43833]
          Length = 286

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 66/224 (29%), Gaps = 29/224 (12%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLP- 797
           +  +      L+PS         L              +    RG ++H +L+ ++ LP 
Sbjct: 3   LPEERTIIGALSPSRAGDFMTCPLLYRFRVIDQLPERPSPAAVRGTLVHAVLERLYDLPA 62

Query: 798 ------------EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
                       E + +  +             +E    L     ++      T      
Sbjct: 63  AARTVAAARDLLEPEWRRLLAEEPEYAGLFATDEERDAWLARAREMI--ERYFTLEDPRR 120

Query: 846 YSEVSVSGKINCPKK-DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
                    I       +++ G ID++ ++    + I +YKT      E E      + Q
Sbjct: 121 LEPAEREMYIEAVLDSGLLLRGYIDRLDVAPTGEVRIVDYKTGSAPGPEFEAKA---LFQ 177

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFI-IPQNKLNKAFAE 946
           +  Y   L  +      +  L+Y+   +V   +P     +A   
Sbjct: 178 MKFYGLALWRARGVVPRMLQLMYLGSGEVVRYVPDEADLRATER 221


>gi|330943700|gb|EGH45993.1| UvrD/REP helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 656

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 100/317 (31%), Gaps = 24/317 (7%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L+    +    E    L +      +  + +I  Q I +        ++    +  +   
Sbjct: 274 LKSYVDSASSIEAIKSLVNTCPKFTYKIEGDISPQYITEAFYSAASYMENLGLDVFEAIR 333

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN--CVLDFEDLIINTNDLLKKRDVSAWIR 170
                K                  +          V+ F  +    ++  +K      + 
Sbjct: 334 AMRLPKD-DVDRDFFHALAIYWNDFTRMLFNMTPPVMTFNTMFAIFSE--RKPHNLKALS 390

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTED-----FFVGKNTHSSPRTLFAVGDEKQS 225
             + + +  +L+DE QD        IR+   +       V  N   +  +L AVGD+ QS
Sbjct: 391 PGVLKPMTTLLVDEFQDVGANTVSWIRATFAEIERRNLTVPTNGSPAYASLMAVGDDWQS 450

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY + G+ P  ++   ++ +        + + + +  + RS   ++   +++        
Sbjct: 451 IYGWRGSSPHYLIDFDKVFE------SPEPNQVLMQENHRSHQMVIDAAEEIVKRTPG-- 502

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                +   +   +S +G    V++ E    Q  +    Q          L + +S    
Sbjct: 503 --GVPNKQGVAKNNSVMGHQVPVEVRELNWKQIAAD-VEQHYHAGDSILVLTRSNSVKDE 559

Query: 346 ARRIAYTISNMIGTDTI 362
           AR     +  ++    I
Sbjct: 560 AR---DELEELLDRARI 573


>gi|260907486|ref|ZP_05915808.1| plasmid-related helicase [Brevibacterium linens BL2]
          Length = 631

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 62/469 (13%), Positives = 124/469 (26%), Gaps = 95/469 (20%)

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
            +DF  ++    DLL +   S  I   +      + +DE QDT+  Q   + ++      
Sbjct: 203 AIDFT-MLNRLADLLVRS--SPPILRGLRATYPFVFVDEFQDTTAAQITFLNTVFGH--- 256

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                       AVGD KQ I  F GA    + R +                  L  +FR
Sbjct: 257 ------PGVVATAVGDSKQRIMRFAGALEDAISRYETDF---------AAKQFALTWNFR 301

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
           S+AD++ V           +  +      ++  S   G+   V L               
Sbjct: 302 SSADLVAV---------QHRIATSIDPAAVQTESRAKGEPDHVPLVIWTYPN-------- 344

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                           +   A  +A  I++ I +    S               +  R+ 
Sbjct: 345 ----------------SVKEAEHLAQWIADDIASSDRTSAEFA-----------LIARQK 377

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFI-------LTDHLAIKDLMALGRFILSQEDDLSFV 438
                           +S+  +D          L  H   + L+ L              
Sbjct: 378 VAEFEPTLTDAFKKRGLSIRNDDALFGKLKLQELLKHDVTRFLVGLLTLAAHPAGHAE-- 435

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
                     +  +   +  +   +E      ++ ++   S    +  ++    +     
Sbjct: 436 ----------TWMESLALLRRVRGSEGTESAERRLSDQLSSLTIELNAWLST--NEISTT 483

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
              D                   G    D L+  L       ++     ++         
Sbjct: 484 DAADIVEHTSSLIGTEALAGFVRGQNSGDNLELLLEALAVRIKSVKDDAEDWPE------ 537

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
                      + + +MT+H +KGLE   V ++      +    +  + 
Sbjct: 538 ---LAEAIEARDSIALMTIHRSKGLEYHTVVILGLDDDQWWSYRMDPLE 583


>gi|295135055|ref|YP_003585731.1| UvrD/REP helicase [Zunongwangia profunda SM-A87]
 gi|294983070|gb|ADF53535.1| UvrD/REP helicase [Zunongwangia profunda SM-A87]
          Length = 360

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 21/130 (16%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           K  ++   D       LLKK    A    K      HI++DE QD SL+Q +V   L E 
Sbjct: 200 KRGLITTNDSSFIALTLLKKFPKIAIWLSK---RFPHIIVDEAQDNSLLQHQVFDKLQEH 256

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                      + +  +GD  QS+Y F  A P+         Q         +  +EL  
Sbjct: 257 GL---------KNIEFIGDPYQSLYEFRDANPQL---FLSKFQND------SYQGLELTD 298

Query: 263 SFRSTADILT 272
           + RS   I+ 
Sbjct: 299 NRRSPQHIID 308


>gi|309806227|ref|ZP_07700241.1| UvrD/REP helicase [Lactobacillus iners LactinV 03V1-b]
 gi|308167374|gb|EFO69539.1| UvrD/REP helicase [Lactobacillus iners LactinV 03V1-b]
          Length = 428

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 83  NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 305 SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 358

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           K+KN ++DF D+      +L     ++ + R     + + IL+DE QD + +Q ++I+ +
Sbjct: 359 KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 418

Query: 200 TE 201
            E
Sbjct: 419 KE 420


>gi|116628402|ref|YP_821021.1| ATP-dependent exonuclease, subunit B [Streptococcus thermophilus
           LMD-9]
 gi|122267003|sp|Q03IZ7|ADDB_STRTD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|116101679|gb|ABJ66825.1| DNA helicase/exodeoxyribonuclease V, subunit B [Streptococcus
           thermophilus LMD-9]
          Length = 1106

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 76/646 (11%), Positives = 189/646 (29%), Gaps = 89/646 (13%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +      ++A +I  ++              + KDILVL+    D          + 
Sbjct: 300 EVVNQKEEVAQVAKSIRQLLADGK----------RYKDILVLL---GDEESYKLHVGQIF 346

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKI 456
             + I         ++ H  ++ + +L R           + ++KS L+  F+++D+   
Sbjct: 347 RKFDIPYYFGKEESMSSHPLVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLF 406

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
               +  +    +         S+ ++ +  I+ L             +         ++
Sbjct: 407 EYYVNFADIKGRHKFLSDFTANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKK 466

Query: 517 FISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            +      ++   + E        E+     + +  + + +   TI    S + ++   +
Sbjct: 467 LVVFLEAVQLPSQMFELSTKASEAEKEQNEQVWKAFTHILEQVETIFGDESLSVDDFLSI 526

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
                   +   V              + + H  P +          P+     +++SD 
Sbjct: 527 LRSGMLACDYRTV-PATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLLSDE 585

Query: 636 IKHLKKSTQEEYNRLL-----------YVGMT---RASDQLIICKH-------------- 667
            +       +E+ RL            +V M+    AS+QL++ +               
Sbjct: 586 ERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSVYL 645

Query: 668 --------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                          N    K      + D++      +     + L         +A  
Sbjct: 646 KELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVAVR 705

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK------ 767
           +     +   +   + I  +   +   + +      +  EP  L+ + + T         
Sbjct: 706 YLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEE--EPLKLSATALTTFYNNQYLYF 763

Query: 768 ----TNLESLLS-DNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTK------NAKL 815
                 LE L S      + G  +H++ +  +         + +     +         L
Sbjct: 764 LRYVLELEELESIHPDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFEIL 823

Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDS-----YSEVSVSGKINCPKKDIIISGRIDQ 870
           +   +       I   +      + +  ++       EV     +    K   I+G ID+
Sbjct: 824 YTEDQESRFSRQILEDIARST-ASVLRDNAAVKVEREEVKFDLLLANSIK---ITGIIDR 879

Query: 871 ISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
           +         + +YKT  +V  +I+        QL  Y + L+ +Y
Sbjct: 880 VDRLTDGALGVVDYKTGKNVF-DIQKFYNGLSPQLVTYLEALRQTY 924


>gi|117924279|ref|YP_864896.1| DNA helicase/exodeoxyribonuclease V, subunit B [Magnetococcus sp.
           MC-1]
 gi|117608035|gb|ABK43490.1| DNA helicase/exodeoxyribonuclease V, subunit B [Magnetococcus sp.
           MC-1]
          Length = 916

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 73/620 (11%), Positives = 173/620 (27%), Gaps = 74/620 (11%)

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
             P Q      +    QE     +AR +   +   +    + +          +I   + 
Sbjct: 228 PEPLQPHSMQRWGFADQEQELLAMARWVRQQLEAGVRNIGVVAP------NLPEIKSGLA 281

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
           +     L     R       + V  +    L     + D + L  F+       ++  +L
Sbjct: 282 RTLAAVLTPGFDRPHSPPQPLPVNISSGSALAHTPVVADALLLLHFLQEPLLPAAWAALL 341

Query: 442 KSPLFNFSED-------------DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           +SP F+  E               +        +   + E  ++  N    +   + +  
Sbjct: 342 RSPYFSGGEKGRDSRGALEAKLRALGCFSLNVTQMCRLLETHKRSENSWYERINRLAQL- 400

Query: 489 HELIHIAQFCSPHDFFTLILGAKK--GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS- 545
            EL             +  L      G  + +     + +    + L      E  + + 
Sbjct: 401 -ELDKALPLGRWAARVSRWLELMGWPGTDRALDSREYQAVSAWRDLLTQWAALEHTAPAL 459

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             +  +  L+                VR+M V  + G     ++L+D   + +    +  
Sbjct: 460 PWESALGLLQGMALRRDFQPDGGEAPVRVMGVLESAGERFDALWLLDMRDEQWPPAPMPN 519

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             +          P+ + +        ++  +        +  R       +A+  +++ 
Sbjct: 520 PFL----------PLALQRQWGMPRASAE-RELTFARQITQRLR-------QAAKTVVVS 561

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              +  +        W D+             +          W AY+ +   P   P +
Sbjct: 562 WCRSDGDRDFLISPLWSDLPLAPVTASPPDYPLDAQLIAAAGRWQAYDGAASIPLTCPPQ 621

Query: 726 --REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
                    + ++   P K F+  +       +  P   D                  RG
Sbjct: 622 SVLPGGAALVKNQASCPFKAFALHRLQAKGLEVTVPGADD----------------RRRG 665

Query: 784 LIIHKLLQVI---FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
            + H +L+          + R+  I       A+   A   K  +      LE   +   
Sbjct: 666 TLAHVMLEKFWKTVQSEANLRQARIAQRQQWVAQAVAAALQKWTVQGDFAGLEQQRLQQL 725

Query: 841 MSCDSYSEVS----VSGKINCPKKDIIISG-----RIDQISI-SQQNIFIFEYKTHHHVP 890
           M+     E++       ++    + + I+G     R+D++   +     + +YK+     
Sbjct: 726 MARWIDVELARAPGFVVEVAEDPQKLAIAGATLELRLDRLDRLADGRHLLIDYKSGQPTT 785

Query: 891 QEIEHIPYTHIAQLSIYEKI 910
           ++    P     QL +Y  +
Sbjct: 786 KDW-QGPRMSDPQLPLYTLL 804


>gi|322804706|emb|CBZ02258.1| ATP-dependent nuclease, subunit B [Clostridium botulinum H04402
           065]
          Length = 1153

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 72/680 (10%), Positives = 188/680 (27%), Gaps = 140/680 (20%)

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + KDI V+     D      +   +   Y I    + +  + ++  I  +++    +
Sbjct: 337 KGCRFKDIAVIT---GDLEGYENIISSVFLQYNIPFFIDKKREINNNPIIVLILSALEVL 393

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANCGISKF---- 481
                  S    LK+ L + + ++   +             +   + + +   S +    
Sbjct: 394 SKNWTYESVFRYLKTGLLDINNEEMDILENYVLANGIKGYQWTNDKPWEHKSFSNYELED 453

Query: 482 ---QHVIKYIHELIHIA----------------------------QFCSPHDFFTLILGA 510
              + ++  I+++ + A                               +  D    ++  
Sbjct: 454 QVEKELLAKINDIRYKAMEPIVTLNKNFKSIDKAKEFCEVLYEFLCNINLPDKIQNMIED 513

Query: 511 KKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
            K   +   +   N++ +++ E L+  +        SL+E    L+      +       
Sbjct: 514 FKAEGEIEKASEYNQIWNIVMEVLDQIVEVIGEEKISLKEFFKILQTGLSEYEIGLIPPT 573

Query: 570 -NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
            ++V + ++   +      +++V     +F                + GI     +    
Sbjct: 574 LDQVMVGSITRLRSHNINTLYIVGVNDSIFPSP-----------LKEEGILSDDDRKFLG 622

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
           +  +         +   E   L+Y  +T  S  L +         K          +   
Sbjct: 623 DKGLEIAKDTKSIA--FEEQFLVYSTLTTPSKYLRLSYPIADGEGKTLRPSIIISRIKKI 680

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--EQKIPKKLFSP 746
           F N      I   N   ++                  R++     +D       K     
Sbjct: 681 FTNICEENDIVKLNGEEEELKNISSAKPTFNYLISNLRKDVEGAKIDNIWGDTYKWYLEN 740

Query: 747 ---------------------------IKNDINEPYILNPSTIDTKGKTNLESLLS-DNQ 778
                                      I+N   +P  ++ S ++   +      +    +
Sbjct: 741 EFWIEKLNRLIKGFDYTNQSKYIETKKIRNLYGKPLKISVSRVEKFSQCPFAYFVQYGLK 800

Query: 779 TFNR----------GLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKN-- 823
             +R          G+ +H +L+      E    +      ++  +       +E  N  
Sbjct: 801 AKDRKIFNLSYPDLGIFMHSILEKFSHELEKQGLEWDTMDLNWAEEEIDKLINEELDNKS 860

Query: 824 ------------LLLSITRLLENPMMTTAMSCDSYS--------EVSVS-------GKIN 856
                       +  S+ ++L+  +    +              E+S           + 
Sbjct: 861 LDILNSSKRYEYVTKSVKKILKRSI--WLIGEHIKRGNFKPSYYELSFDINGDYPPIAME 918

Query: 857 CPKKDII-ISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI- 910
               +++ + GR+D++         +  I +YK+      ++  + Y    QL IY    
Sbjct: 919 LHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSGA-KEFKLSDVYYGLQLQLLIYLDAI 977

Query: 911 LKDSYPNKSLV---CLLIYV 927
           L +      +      L+Y+
Sbjct: 978 LTELAERSGINGEPGALLYL 997


>gi|55821689|ref|YP_140131.1| ATP-dependent exonuclease subunit B [Streptococcus thermophilus LMG
           18311]
 gi|81560166|sp|Q5M2T6|ADDB_STRT2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|55737674|gb|AAV61316.1| ATP-dependent exonuclease, subunit B [Streptococcus thermophilus
           LMG 18311]
          Length = 1106

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 76/643 (11%), Positives = 191/643 (29%), Gaps = 83/643 (12%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +      ++A +I  ++              + KDILVL+    D          + 
Sbjct: 300 EVVNQKEEVAQVAKSIRQLLADGK----------RYKDILVLL---GDEESYKLHVGQIF 346

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKI 456
             + I         ++ H  ++ + +L R           + ++KS L+  F+++D+   
Sbjct: 347 RKFDIPYYFGKEESMSSHPLVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLF 406

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
               +  +    +         S+ ++ +  I+ L             +         ++
Sbjct: 407 EYYVNFADIKGRHKFLSDFTANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKK 466

Query: 517 FISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            +      ++   + E        E+     + +  + + +   TI    S + ++   +
Sbjct: 467 LVVFLEAVQLPSQMFELSTKASEAEKEQNEQVWKAFTHILEQVETIFGDESLSVDDFLSI 526

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
                   +   V              + + H  P +          P+     +++SD 
Sbjct: 527 LRSGMLACDYRTV-PATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLLSDE 585

Query: 636 IKHLKKSTQEEYNRLL-----------YVGMT---RASDQLIICKH-------------- 667
            +       +E+ RL            +V M+    AS+QL++ +               
Sbjct: 586 ERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSVYL 645

Query: 668 --------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                          N    K      + D++      +     + L         +A  
Sbjct: 646 KELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVAVR 705

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK------ 767
           +     +   +   + I  +   +   + +      +  EP  L+ + + T         
Sbjct: 706 YLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEE--EPLKLSATALTTFYNNQYLYF 763

Query: 768 ----TNLESLLS-DNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTK------NAKL 815
                 LE L S      + G  +H++ +  +         + +     +         L
Sbjct: 764 LRYVLELEELESIHPDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFEIL 823

Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS-GKINCPKKD-IIISGRIDQISI 873
           +   +       I   +      + +  ++  +V     K +    + I I+G ID++  
Sbjct: 824 YTEDQESRFSRQILEDIARST-ASVLRDNAAVKVECEEVKFDLLLANSIKITGIIDRVDR 882

Query: 874 SQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
                  + +YKT  +V  +I+        QL  Y + L+ +Y
Sbjct: 883 LTDGALGVVDYKTGKNVF-DIQKFYNGLSPQLVTYLEALRQTY 924


>gi|78776289|ref|YP_392604.1| hypothetical protein Suden_0088 [Sulfurimonas denitrificans DSM
           1251]
 gi|78496829|gb|ABB43369.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 781

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/378 (10%), Positives = 113/378 (29%), Gaps = 51/378 (13%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 ++ +M V   + +    + +VD        K  K M +   + +   +P    +
Sbjct: 404 DDVRGGKITVMGVLETRSVTFEAIIIVDFDDSNVPKKSDKDMFLNTQVREMANLPTMSDR 463

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
              + +    LI   K+           V ++                + K +  + +  
Sbjct: 464 ENLQKHYYEMLINGSKE-----------VAIS--------------FVKSKESAGSRFLK 498

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
             +   N++  ++   +   ++      +      + +   +  +  +L       +K +
Sbjct: 499 QLNIKENNQHNEQEYASLLFSRAGVNKQQEREISFDYSFRGKTLSATKLKTFLTCKRKYY 558

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHKRKN 803
                            I       +   +        G  +HK L ++      ++   
Sbjct: 559 YRY--------------IMQLKNHEIPKDMPKEH--EIGSDVHKALKELYTKKSSYESLE 602

Query: 804 FITSYCTKNAK-LWPAKEYKNLLLSITR----LLENPMMTTAMSCDSYSEVSVSGKINCP 858
            +     K         E +  L+++      +     +      + Y  +     ++  
Sbjct: 603 ELRKDLHKEMSCASGESELEGYLMAVQERRMSVFVQNEIKRF--AEGYVVLECEKSLSVE 660

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
              ++++G+ID+I I +  +++ +YKT  +     ++       QL  Y  +       K
Sbjct: 661 FGGMVLNGQIDRIDIKENELYVLDYKTGSYPIYTQKNFTEATDFQLEFYYLLASTLGQVK 720

Query: 919 SLVCLLIYVSEPKVFIIP 936
              C    + E K+   P
Sbjct: 721 --ECGYYDLKESKIVTEP 736


>gi|254495648|ref|ZP_05108570.1| endonuclease [Legionella drancourtii LLAP12]
 gi|254355218|gb|EET13831.1| endonuclease [Legionella drancourtii LLAP12]
          Length = 842

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/537 (10%), Positives = 146/537 (27%), Gaps = 69/537 (12%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
              +    L++   +   +          +      +L+SP       + F   ++  + 
Sbjct: 266 FNISLGQTLSEFPLVAHALCWLNLDTQLLNHHQAALLLQSPYLG-GAQEEFLARSEYLQD 324

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
            T+ E         IS  +     +  L+               +   + R   +   G+
Sbjct: 325 GTLLENQHLPFTTFISDLEANTPKLAALLKHISPYPKEASVHEWIDYFQERLNSLGFPGD 384

Query: 524 EV--IDVLDEFLNFTLRNEQNSYSSL-------QELISELEQYPPTIKRAHSANHNEVRI 574
                +    F  FTL  ++    SL        E +  L+                V+I
Sbjct: 385 YGLNSENYQCFNRFTLLFDELRQLSLLSARLNKAEALEALQLLTQNTIFQAQKTTAIVQI 444

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
             +  A G E   ++++    Q    K      I P L  +  +P  +P           
Sbjct: 445 SGLLEASGCEFDSLWVMGLTDQCLPQKVHLSAFIPPQLQRELLMPHSLP----------- 493

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                 +  Q+   RL     +      ++  ++    +  +   +    +  +  + E 
Sbjct: 494 --ARELQFAQQTLKRLQSSAES------VVFSYAKLQADNPNLPCS----LITNHPHFEL 541

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
           +     T   ++   +   ++        +     I     +          ++      
Sbjct: 542 LPSSNQTPGCDELSALEEHYTVPIQSEEHITGGTAILANQAKCPFKAFAEHRLRAKAASQ 601

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR------KNFITSY 808
                                      RG IIHK++++++   E ++      ++ +  +
Sbjct: 602 TT------------------DGLDAKERGQIIHKVMELLWQTLESQQALFNLDEHQLEQH 643

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLEN---PMMTTAMSCDSYSE--------VSVSGKINC 857
             +  +   A   +    S +  ++      +   +      E         ++      
Sbjct: 644 IEQAIQSALAPLKEQHPESFSAFIQEVEYIRLKRLVCACLEWEKQRSPFTIAALEQSYTI 703

Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
               +    R+D++       ++ +YK+     +           QL +Y  + K  
Sbjct: 704 NLAGLDFRVRVDRLDQVADKKWVIDYKSSLPSSKPWNEERPK-EPQLLLYALLDKQI 759


>gi|330945678|gb|EGH47143.1| UvrD/REP helicase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 287

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR-----T 215
              +    +   + + + H++IDE QD S      +R+   +         + R     +
Sbjct: 183 TSPENLKHVSDPMLRPLAHLMIDEFQDVSPQIVSWLRASLREIRRRGPALHTGRIAQHSS 242

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
           L  VGD+ QSIY + G+ PK  +   +             + + L  +FRS
Sbjct: 243 LLCVGDDWQSIYGWRGSSPKYFMEFAKEFS------SPATTRVMLSDNFRS 287


>gi|208434307|ref|YP_002265973.1| hypothetical protein HPG27_341 [Helicobacter pylori G27]
 gi|208432236|gb|ACI27107.1| hypothetical protein HPG27_341 [Helicobacter pylori G27]
          Length = 773

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/399 (11%), Positives = 109/399 (27%), Gaps = 68/399 (17%)

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           SL++L+    Q      R   ++  ++R+M     +G++   + +VD             
Sbjct: 378 SLKDLLHLYLQEFEANFRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCD 437

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           + +  +L     +P  + +   + +    L K+ K         L Y+            
Sbjct: 438 LFLNSALRKSLNLPTLLDKKNLQKHYYYQLFKNSK------EITLSYI------------ 479

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                   +    +    ++  + H +       L  +    ++   E     P++    
Sbjct: 480 --------ESETSKASNMLLELNLHIEPIKDAYTLFATAPLKDYQEEEIKAAIPKDF--- 528

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
                        +   L    +   +       S  D                   G +
Sbjct: 529 -------NFSASSLNAFLTCKRRFYYHYIKRFKESPKDENNS-------------AVGSL 568

Query: 786 IHKLL-QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN---LLLSITRLLENPMMTTAM 841
           +H+LL +                +  +  +    KE  +    L  I             
Sbjct: 569 LHELLKEAYEKDKNPYALEERLIWLLETRENITPKERLDTLVALKKIQAFYLKE--KERF 626

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKT---------HHHVPQ 891
                  + +        + +I  GRID+I  +    I + +YK               +
Sbjct: 627 KAKIKI-LDLEKSFETIIQGVIFKGRIDRIDKTADNEIILLDYKFKSDLKLDNMSKTQRE 685

Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            +  I   +  Q++IY   LK+      +      + + 
Sbjct: 686 GLSPISTDY--QMAIYAFALKNLGYKGPIKAFFYDLRKG 722


>gi|145218886|ref|YP_001129595.1| hypothetical protein Cvib_0065 [Prosthecochloris vibrioformis DSM
           265]
 gi|145205050|gb|ABP36093.1| hypothetical protein Cvib_0065 [Chlorobium phaeovibrioides DSM 265]
          Length = 921

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 139/550 (25%), Gaps = 54/550 (9%)

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD- 452
           R +     I + G      T  L  + ++ L   +      +S   +L SPL  +S  + 
Sbjct: 282 REVFTAAGIPLSGLRDAYETRDLGGEAVLNLLYCLEDVPPAVSMASLLSSPLMPWSTVEG 341

Query: 453 --IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
             + +       T  + E   K A+  +            L          + F  +L  
Sbjct: 342 NRLAQDAIDMRNTLKLLEAQSKKAHRMLELVTGGPADADHLKARM------EEFAGLLDE 395

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
            +  +    R G     +  E                QEL   ++  P            
Sbjct: 396 AEELKSHRERAGQLCKAIAAELTASA------GPVKWQELRDIVQITPQAAPALPEPTRE 449

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            V +             ++     +  F       +       ++               
Sbjct: 450 GVAVFYEGQEPWRTVRQLYAAGCSAGHFPESASASIIFTDEELEELKA---------ATG 500

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           +  +      +  ++ + R L      A   + +    +   +  +   +          
Sbjct: 501 MDMERAAVRGERNRKRFRRQLTSATEAA---VFLVPGRDAQGKSLAPSSSITFAEALFET 557

Query: 691 NDERVKKIKLTNSIN---KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
            ++R   + L NS+                 P    +  +   K+    +   +K  +  
Sbjct: 558 GNDRGLVLTLENSLEYNMAGGLPEKPGKEGVPPRELVPEDLDFKKKNLLETGMQKDGTLK 617

Query: 748 KNDINEPYILNPSTIDTKGKT----NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
               +    L  S +    +       E           G + H + + +FT        
Sbjct: 618 PESPSRLDTLLVSPLAWLFERLDIKAREWAPEKLDPLKMGTVAHAVFEHLFTPEGIAGAE 677

Query: 804 FITSYCTKNAK------------LWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSEVS 850
            I +   +                    E +NL+  I    LE   +  AM       V 
Sbjct: 678 GIRNLLPELYDNAVKKTCPFLLRREWTVERENLMQGILKAALEWSEILEAMQARV---VE 734

Query: 851 VSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHI-AQLSIYE 908
               +      + I G  D +  +    + + +YK         E         Q  +Y 
Sbjct: 735 TEISLEGTLSGVPIHGNADLLLKLDDNRMLVVDYK--KSSSGSREKRMNAGWDLQAELYR 792

Query: 909 KILKDSYPNK 918
            +++   P K
Sbjct: 793 TMIETGGPEK 802


>gi|309809850|ref|ZP_07703700.1| UvrD/REP helicase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169802|gb|EFO71845.1| UvrD/REP helicase [Lactobacillus iners SPIN 2503V10-D]
          Length = 431

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 83  NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 305 SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 358

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           K+KN ++DF D+      +L     ++ + R     + + IL+DE QD + +Q ++I+ +
Sbjct: 359 KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 418

Query: 200 TE 201
            E
Sbjct: 419 KE 420


>gi|255305966|ref|ZP_05350138.1| ATP-dependent nuclease subunit B [Clostridium difficile ATCC 43255]
          Length = 1155

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 107/917 (11%), Positives = 247/917 (26%), Gaps = 204/917 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   +E    +   +D         D+L        +   +D     + IDE    +  Q
Sbjct: 164 IYNSFEGKLHE-NYVD-------AQDMLTSLASKIELSSYLDG--ACVYIDEFTGFTPNQ 213

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + VI+S+           S    +    D+   I     ++     R K    K      
Sbjct: 214 YNVIKSIL--------NKSKSVNISLTVDD---INYIGYSKSDMFSRTKFTYSKLTQLCN 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           ++   I   ++         +   V    E  + L                    ++ + 
Sbjct: 263 EEGIKILPQVN---------LNTGVIKRFEKVKELQH------------------LERFY 295

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +      + +   +          IA  I +++           + ++
Sbjct: 296 NAYPYKIYSNPTENIKIKEFNNLYSEVEE-------IAREIVHLVRD---------KNVR 339

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +  R   D     FL   + N+Y I    + +     +  +  +++       + 
Sbjct: 340 YRDITIATR---DLNRYDFLVHSIFNEYNIPNFIDKKREAKSNPIVILIISALEMKNRRY 396

Query: 433 DDLSFVCMLKSPLFNFSEDDI-----------------FKICTQRHETETVYEYIQKFAN 475
              +    LKS L     DDI                 F        T+++     +F  
Sbjct: 397 GYETMFRYLKSGLIGIDNDDINLLENYVLANGIKGKKWFDEKWDYRITQSLSGQESEFEL 456

Query: 476 CGISKFQHVIKY---------------------IHELIHIAQFCSPHDFFTLILGAKKGR 514
               K   +                           +       +  +    ++   K +
Sbjct: 457 ELKEKINEIKNRVLEPIVILQEKLRGKNRVKEICRYIYEFLLDINMPETIESLIINFKDK 516

Query: 515 QQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEV 572
            +  ++   ++V D++ + L+  +    +   SL++ I  +       +        ++V
Sbjct: 517 GELDVANQYSQVWDIVVDILDQMVELMGDEIISLEKFIKLITLGFDEYELGLVPPSIDQV 576

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            + +V   K  ++  ++LV T   VF         +  +  +  G         S+    
Sbjct: 577 LVSSVDRMKNPDTKYLYLVGTTDGVFPLITKDSGILSDNDRESLGNKGIEVDIDSKTRSF 636

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                        E   L+Y  +T  S  L I    +    K          +   F N 
Sbjct: 637 -------------EEQFLVYKALTSTSKNLTITYPISDHEGKTLRPSIIISRLKKIFPNI 683

Query: 693 ERVKKIKLTN-SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
           E    +   N S +KD        +          +       + ++I        +  +
Sbjct: 684 ENKSYLVEENKSTDKDILKKITVKSPTFNELINVIKNYDSDGYNTEEINSIWLDIYRYYL 743

Query: 752 NEPYI---------------------------------LNPSTIDTKGKTNLESLLS-DN 777
            +                                    L+ S ++   +      +    
Sbjct: 744 KDEIYSSITKKVIKGLSYTNQVHKIEEKKIRSLYKSNSLSISRLEKYAECPFAYFIQYGL 803

Query: 778 QTFNR----------GLIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLW-------- 816
           +   R          G  IH +L              ++    Y      +         
Sbjct: 804 KAKKRKEYSFTPPDLGTFIHNILDRFSKELLQDNLTWRDIDEKYIELKIGIIVDEIILKI 863

Query: 817 ------PAKEYKNLLLSITRLLENPM--MTTAMSCDSYSEVSVSGKINCPKK-------- 860
                  ++ YK L   +  +L   +  ++  +   S+  +    K     K        
Sbjct: 864 PGYILNSSERYKYLAYRLKNMLTTAITIISQQIKQGSFEPIDYEVKFGNNGKYPPIKMVL 923

Query: 861 ----DIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
               ++ + G+ID++   ++     I I +YK+  +    +  I Y    QL +Y   + 
Sbjct: 924 ENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG-NKSISLTEIYYGLQLQLLVYLDAIL 982

Query: 913 DSYPNKSLV---CLLIY 926
           +S  ++ +      ++Y
Sbjct: 983 ESAKDEDININPAAILY 999


>gi|228996314|ref|ZP_04155958.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock3-17]
 gi|228763418|gb|EEM12321.1| ATP-dependent nuclease, subunit B [Bacillus mycoides Rock3-17]
          Length = 1166

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 78/723 (10%), Positives = 200/723 (27%), Gaps = 158/723 (21%)

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
           + + +  P ++  +    +L   ++       +A  I  ++  +           + +DI
Sbjct: 290 EAEFESRPSKKFQSEPDITLYTAANLRAEVEGVAREIRRLVAEEE---------YRYRDI 340

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            VL+R          + + L  DY I    +++  ++ H  I+ + +    I       +
Sbjct: 341 TVLLRN---GESYYDVMKTLFTDYDIPHFIDEKRPMSHHPLIECIRSALEVISGNWRYDA 397

Query: 437 FVCMLKSPLFNF----------SEDDIFKICTQRHETETVYEYIQKFANCGISKF----- 481
               +K+ L               D+    C         +   + +             
Sbjct: 398 IFRCIKTELLYPLDVRKESMREEMDEFENYCLAYGVQGKRWTAGEPWTYRRYRSLDGVNG 457

Query: 482 ------QHVIKYIHELIHIA-------------------QFCSPHDFFTLI-----LGAK 511
                 + + + I+ L  +                       + + F   +     L   
Sbjct: 458 MQTDSEREMEEKINRLRDVVRTPIIRLQKRLKRASSVVQMCEAVYLFLEELDVPKKLEDL 517

Query: 512 KGRQQ-----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           + R +       +   ++V + +   L+  +        S    I  +      ++ A+ 
Sbjct: 518 RMRAEAEGNFLFASDHDQVWEEVMNLLDTFVEMLGEEKMSRSMFIDVMTTGLEALQFANI 577

Query: 567 ANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               ++V I  +  ++  +    F++     +                 D G+     + 
Sbjct: 578 PPSLDQVLIANIDRSRLSDIRAAFVIGANEGIIPAAPS-----------DEGMLSDEERE 626

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                 V   +    + T  E   ++Y  +TRAS++L I         K     ++   V
Sbjct: 627 FLVTAGVE--LAPTTRQTLLEEQFVIYQTVTRASEKLYISCPLADEEGKTLLSSSFIKKV 684

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ------LMDEQKI 739
              F   + V      N +++   I+Y  +     +   ++ +  K+      L     +
Sbjct: 685 KRMFPCVKEVFVTNDVNDLSRQVQISYVATPEVTLSYVTQQLQNWKRYGFEGNLDFWWDV 744

Query: 740 PKKLFSPIKNDINEPYIL---------------------------NPSTIDTKGKTN--- 769
                +  +       +L                           + S ++   +     
Sbjct: 745 YNFYVTSPEWKQKSSRVLSSLFYRNRAQKLSSVVSRDLYGDKIKGSVSRMELFNRCAYAH 804

Query: 770 --------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT---SYCTKNAKLWPA 818
                    E  +      + G + H  L+ I      + + +       C   + +   
Sbjct: 805 FAQHGLSLRERDIFKLDAPDIGELFHAALKKIADKLLRENRTWADLSIKECEHLSAVVIE 864

Query: 819 KEYKNLLLSIT----------RLLENPMMTT--AMSCDSYS----EVSVSGKINCPKKDI 862
           +    L   I           + L+  +  T   +   + S     V +           
Sbjct: 865 EIAPLLQRQILLSSNRNYYLKQKLQQIIFRTSLILREHAKSSGFVPVDLEVPFGMGGTGS 924

Query: 863 I--------------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           +              + GRID++  ++      + I +YK+      ++  + Y    Q+
Sbjct: 925 LPPMEFSLPNGVKMEVVGRIDRVDKAEDENGTFLRIIDYKSS-TKALDLTEVYYGLALQM 983

Query: 905 SIY 907
             Y
Sbjct: 984 LTY 986


>gi|329847171|ref|ZP_08262199.1| double-strand break repair protein AddB [Asticcacaulis biprosthecum
           C19]
 gi|328842234|gb|EGF91803.1| double-strand break repair protein AddB [Asticcacaulis biprosthecum
           C19]
          Length = 999

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 72/697 (10%), Positives = 186/697 (26%), Gaps = 68/697 (9%)

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             ++     +V+ +         ++   + + + R  +    + W   ++   ++ +   
Sbjct: 284 RHNVARATVRVWPVSLEDDRRKANARRRLLNEALRPAE--ATKDWRDQIAALRAESDTAI 341

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI--LVLVRKRK 384
           +        +             A T+  ++  +T+ + GK   +   D+     V  R 
Sbjct: 342 DDGLDGLTEINAARDEE------AATVIALLMRETLETPGKTVALVTPDLTLARRVSARL 395

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE----DDLSFVCM 440
               +   +   +             +LT      D +A+             D     +
Sbjct: 396 TRWGLQADSSAGEPLANSPTGRFLLDLLTLLQTPCDPVAILSLWGHPACLFATDPGRTHV 455

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
               L   + +D+  +     E     +   ++A   +   +  I  + E          
Sbjct: 456 EMYGLRGATPNDMDSVRAALIERNRATDLWDRYAAAILPVAEMPISDLGEAATRITR--- 512

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                  L    G+  +    G    ++L   +        ++   + +++ +L +    
Sbjct: 513 ---LAESLSLDDGQALWTGAAGASAAELLAGLIREGAGYTVDTLRDVADILGQLIRNGKV 569

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                   H  + I+    A+ + +  + L      V+         +   +    G+P 
Sbjct: 570 RTG--GNTHPRLLILGAIEARMVTADRLILAGLEEGVWPQAPDLDPFLSRPMRAALGLPS 627

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
              ++    +         +      + R                        +   Q  
Sbjct: 628 PERRTGLSAHDFVQAASAPECFLVTRHRR----------------------EGEPQVQSR 665

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
           W   +                +  +   W+ +  +     +      +   +   +  + 
Sbjct: 666 WLWRLQTLCKG-------AKVDIPSDGRWLDWARALDRGLSDKPAALKPAVRPNPKPPVE 718

Query: 741 KKLFSPIKNDIN--EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
            +       ++                    L+      +   RG  IHK L+   T   
Sbjct: 719 ARPKKLSVTEVEVFIRDPYAIYAKHVLALRPLDRPNEPVEGRQRGTAIHKSLERFVTEDT 778

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT---AMSCDSYSEVS---VS 852
              K  I   C    +   A       +++ + L  P M         D  +      + 
Sbjct: 779 PLGKAGIDRLCDLLHEELAATRLSPAQMALQKPL-LPGMAAEFIRFEADRRAHRPKLHIE 837

Query: 853 GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            +      D  +  + D+I +    + I ++KT        + +      QL++   ILK
Sbjct: 838 QRGELKIGDFTLVAKADRIELRDDGVDILDFKTG--AAPSAKAVAAGFYPQLTLTAAILK 895

Query: 913 D-----SYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
                    ++ L   L+YV        PQ+ + K  
Sbjct: 896 QGGFADIRADRPL-GDLLYVRVSPDVTKPQSAVQKGL 931


>gi|228949912|ref|ZP_04112107.1| DNA helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228809763|gb|EEM56189.1| DNA helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 470

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 44/217 (20%)

Query: 95  DLKEKLKKSQDEF-----IKIRDRFNTYKMFKSTLASLTLAKY--LNAHYEEA-KKKNCV 146
           D  + LK             + D     +  + T   +T+     +   +++  KKKN +
Sbjct: 134 DYFDFLKDEIQWIKGKNISTLHDYLKADRRGRGTNTRVTMNDREIIYQVFDQYNKKKNYL 193

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LDF+DL      L+K  D+          + +HI +DE QD   +Q + ++ +       
Sbjct: 194 LDFDDL---AVVLMKNPDIFPD-----SIKYDHIFVDEAQDLQQVQLQALKHIAR----- 240

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                  ++     D+ Q IY       +  L                     L  S+RS
Sbjct: 241 -------KSFIVAADKGQKIYKTSFTWKEIGLNV------------TGNRTKILKESYRS 281

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
           T  I+ +   +         +  D    I +   R G
Sbjct: 282 TKQIIQLAASLQQNDM----IIHDEEYVIPNLPEREG 314


>gi|126724546|ref|ZP_01740389.1| putative Helicase/Exonuclease [Rhodobacterales bacterium HTCC2150]
 gi|126705710|gb|EBA04800.1| putative Helicase/Exonuclease [Rhodobacterales bacterium HTCC2150]
          Length = 975

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/391 (14%), Positives = 110/391 (28%), Gaps = 36/391 (9%)

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
                Q +    G     +++   +   +  + +      L+  L       + +  A+ 
Sbjct: 496 DDSEHQLWAEDEGKAATKIMEGLQDEAHQGGKMAPFEYAALLHSL-LQDGEARSSVEAHP 554

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + V I     A+   + +V L      ++         +  SL    G+ +   +     
Sbjct: 555 D-VMIWGTLEARVQGADLVILGGLNEGIWPGDAAPDPWLNRSLRHQAGLLLPERRIGLAA 613

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
           +     I   K            V +TRA            +    S        + D  
Sbjct: 614 HDFQQAIAAPK------------VILTRAIRN-------AEAETVPSRWLYRLTSLLDGL 654

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
             D+               W +   +   P+   +           + +      + I+ 
Sbjct: 655 RGDQNGNAALAEMRFRGRAWQSLAQALDRPDAPVVPMTRPSPCPPIDVRPKLLSVTEIQT 714

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
            I +PY +    +   G T L+ L        RG IIH++        +           
Sbjct: 715 LIRDPYAIYAKHV--LGLTALDPLRPTPDPRLRGTIIHEIFHKFSKATKSGMPENAIDLL 772

Query: 810 TKNAKLWPAKE----------YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
                   AKE             L  +    +E  +    ++  +Y E    G I  P 
Sbjct: 773 LTTTDDVFAKEIPWPATRRIWRARLARNAHWFVETEIARRKLATPTYFE--TKGHIPIPN 830

Query: 860 KDIIISGRIDQISISQQN-IFIFEYKTHHHV 889
             + I G  D+I ++    + I++YKT    
Sbjct: 831 TPVAIKGTADRIDVAPDGQLIIYDYKTGSPP 861


>gi|116619174|ref|YP_821330.1| ATP-dependent nuclease subunit B-like protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116222336|gb|ABJ81045.1| ATP-dependent nuclease subunit B-like protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 987

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/425 (9%), Positives = 101/425 (23%), Gaps = 72/425 (16%)

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            +V +  +  A+G+    V++      +F     +   ++    +  GI +         
Sbjct: 485 GKVWVGGIEEARGMAFRAVYVPGVNEGLFPRPPAEDPLLLERQREALGIAL----RAEDT 540

Query: 630 NIVSDLIKHLKKSTQEEYNRL-LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            ++        +     Y+RL L  G  R         H      +             +
Sbjct: 541 ELLGIAAACATEHFALSYSRLDLLTGRVRVPSFYAFAAHRAAGGSEIDVHEFEKRARSAT 600

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                        ++I+  E+     +     +    +    + +   +    +  +P K
Sbjct: 601 GTRIGWPAPENAADAIDDAEFDLATLAPLTKGSGQYLKSLPGRAVESLRARWMRWHAPWK 660

Query: 749 NDINE----------------PYILNPSTIDTKGKTNLESLL---------------SDN 777
                                    +PST+    +      L                  
Sbjct: 661 AADGLVVDEIGDDALKRYRLGARAWSPSTLQQYARCPYRFALRGILGLRAVENPTGIQRM 720

Query: 778 QTFNRGLIIHKL-LQVIFTLPE----------------------HKRKNFITSYCTKNAK 814
               RG + H++  +++  L                                +       
Sbjct: 721 DPAQRGELFHRVQFELLRDLASRELLPVSPATLAGALDRLDAVLEDVAAKAEAELAPAIP 780

Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP------------KKDI 862
                E + +   +   L+   +  A     + E+S   K                +   
Sbjct: 781 QIWRGEVQAIRADLRGWLQEKALRDADWTPQFYELSFGLKDPAGRDPRSRKDAVEVEGGY 840

Query: 863 IISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
            + G ID +      +  + ++KT      + + +      Q  +Y    +         
Sbjct: 841 RLQGSIDLVERHPSGVLRVVDHKTGRVPEPKPDTVGGGEALQPLLYALAAEAIVGEPVSS 900

Query: 922 CLLIY 926
             L Y
Sbjct: 901 GRLYY 905


>gi|91209335|ref|YP_539321.1| hypothetical protein UTI89_C0288 [Escherichia coli UTI89]
 gi|91070909|gb|ABE05790.1| hypothetical protein UTI89_C0288 [Escherichia coli UTI89]
          Length = 612

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 79/596 (13%), Positives = 172/596 (28%), Gaps = 136/596 (22%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD---F-----ED 151
           ++    E   +RD     +  + + ASL   + + +   + K+   + D   F      D
Sbjct: 110 MENISAEIADLRD--KQSRTTRVSQASLERERKIVS---KEKRLQNLSDVYKFTYNPTGD 164

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEI--------NH--ILIDEVQDTSLIQWEVIRSLTE 201
               T D L   +V     Y +D++          H  +LIDE QDT+       + L  
Sbjct: 165 --NRTKDSLNHSEVIKLGSYFLDKKYTMQKILVNRHPILLIDESQDTN-------KLLMN 215

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                +  +    ++  +GD  Q IYS   ++ +  L           +  +    I   
Sbjct: 216 ALLEVEKNNRDTFSVGLLGDMMQRIYSDGKSDLEACLD---------EHWKKPEKSI--- 263

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS   ++ +++ + S  +N            + ++    + G V++   +   H   
Sbjct: 264 -NYRSPKRVVALINLIRSQVDNH-----------KQKAKEDAEEGYVRI--FIKECHSDN 309

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
            +  +         +  +         +   I               R+        L +
Sbjct: 310 KDRDESFVKQRMREITLDDDWENHDSLVNTLILE-------HHMAATRMGFIDMFTPLYQ 362

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                         LK        G     L +   I  +++       + D  +   +L
Sbjct: 363 -----------IERLKT-------GLLEGSLGNINFICGIVSPLISACIKNDTFTITNIL 404

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           ++       + + K                      +++ +  +  +   I         
Sbjct: 405 RTNAPLLKREHLLKNTNN---------------TSPLTQIRSSLDMLKSFISKNPELITI 449

Query: 502 DFFTLI-----LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
           +    I     L      Q+ +    N   D+++         +++  S L +       
Sbjct: 450 NLLHKINEIKLLDVPDSIQEILESNDNSQDDIIEA-------WQKSFSSPLCQFDKYYNY 502

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                         +  I T    KGLE P V +               +          
Sbjct: 503 V-----------KGKTNIDTHQGVKGLEFPRVLV---------------LIDDSEAKGFM 536

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                +   K +     D  K  K ++++   RL YV  +RA   L I  +++ + 
Sbjct: 537 FSYDKLFGIKEKTKTDLDNEKEGKDTSEDRTRRLFYVTCSRAQKSLAILAYTDNTE 592


>gi|84501213|ref|ZP_00999418.1| hypothetical protein OB2597_12648 [Oceanicola batsensis HTCC2597]
 gi|84390504|gb|EAQ02992.1| hypothetical protein OB2597_12648 [Oceanicola batsensis HTCC2597]
          Length = 976

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 61/494 (12%), Positives = 141/494 (28%), Gaps = 49/494 (9%)

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           F + D  +    + ++E    + +  A+      Q  +  + +   IA   +  +  +  
Sbjct: 441 FPDGDTIRRFAAKQDSEIADAWAEWVADQAFGPAQDALPRLSD--RIAALVARAEALSRG 498

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
            GA      +    G +V   LDE         +        L++ + +      R    
Sbjct: 499 CGAGGAGTLWAGNAGQDVRAKLDELAGAADAAGEIGAEDFTNLLTSILRGAEE--RDSKT 556

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            H  + I     A+   + +V L       +         +  ++  + G+ +   +   
Sbjct: 557 PHPHILIWGTRDARVQGADLVILGGLNEGTWPEVPAPDPWLNRAMRAEVGLLLPERRIGL 616

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
             +     I   +            V +TRA              E ++    W + + +
Sbjct: 617 SAHDFQQAIGAPE------------VWLTRALR----------GPEAETVASRWLNRLTN 654

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
             +      +  L  +  +        S     +              E +  +   + I
Sbjct: 655 LLNGLGPGGRSALEGARARGAHWLGMASQLEQVDPVDPAPRPAPAPPVEARPRRLSVTQI 714

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN---- 803
           K  I +PY +     +      L+ L+ +     RG ++H++++          +     
Sbjct: 715 KTLIRDPYAIY--AREVLRLRPLDPLMKEPDALQRGTVLHEVMEHFVRAATADPERLSAD 772

Query: 804 ---FITSYCTKNAKLWPAKEYKNLLLS---ITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
               +T     +   W       L         ++       A    +  EV   G+   
Sbjct: 773 ELLALTRRVLADNVPWAEARLLWLARMTRIAEAVVTGEAGRLAQGRPARFEVP--GRATL 830

Query: 858 PKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD--- 913
           P     ++ + D+I +    N  I++YKT        +        QL +   + +    
Sbjct: 831 PGPGFDLTAKADRIDLDPAGNALIYDYKTGQMSSARQQMSFD---LQLLLEAAMAERGGF 887

Query: 914 --SYPNKSLVCLLI 925
               P   L    +
Sbjct: 888 EGIRPRHVLRAAFV 901


>gi|55823611|ref|YP_142052.1| ATP-dependent exonuclease subunit B [Streptococcus thermophilus
           CNRZ1066]
 gi|81558976|sp|Q5LY79|ADDB_STRT1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|55739596|gb|AAV63237.1| ATP-dependent exonuclease, subunit B [Streptococcus thermophilus
           CNRZ1066]
          Length = 1106

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 76/643 (11%), Positives = 191/643 (29%), Gaps = 83/643 (12%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +      ++A +I  ++              + KDILVL+    D          + 
Sbjct: 300 EVVNQKEEVAQVAKSIRQLLADGK----------RYKDILVLL---GDEESYKLHVGQIF 346

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKI 456
             + I         ++ H  ++ + +L R           + ++KS L+  F+++D+   
Sbjct: 347 RKFDIPYYFGKEESMSSHPLVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLF 406

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
               +  +    +         S+ ++ +  I+ L             +         ++
Sbjct: 407 EYYVNFADIKGRHKFLSDFTANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKK 466

Query: 517 FISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            +      ++   + E        E+     + +  + + +   TI    S + ++   +
Sbjct: 467 LVVFLEAVQLPSQMFELSTKASEAEKEQNEQVWKAFTHILEQVETIFGDESLSVDDFLSI 526

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
                   +   V              + + H  P +          P+     +++SD 
Sbjct: 527 LRSGMLACDYRTV-PATVDVVNVKKYDLIQPHSAPYVFALGMTQSHFPKVGQNKSLLSDE 585

Query: 636 IKHLKKSTQEEYNRLL-----------YVGMT---RASDQLIICKH-------------- 667
            +       +E+ RL            +V M+    AS+QL++ +               
Sbjct: 586 ERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSVYL 645

Query: 668 --------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                          N    K      + D++      +     + L         +A  
Sbjct: 646 KELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVAVR 705

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK------ 767
           +     +   +   + I  +   +   + +      +  EP  L+ + + T         
Sbjct: 706 YLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEE--EPLKLSATALTTFYNNQYLYF 763

Query: 768 ----TNLESLLS-DNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTK------NAKL 815
                 LE L S      + G  +H++ +  +         + +     +         L
Sbjct: 764 LRYVLELEELESIHPDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFEIL 823

Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS-GKINCPKKD-IIISGRIDQISI 873
           +   +       I   +      + +  ++  +V     K +    + I I+G ID++  
Sbjct: 824 YTEDQESRFSRQILEDIARST-ASVLRDNAAVKVECEEVKFDLLLANSIKITGIIDRVDR 882

Query: 874 SQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
                  + +YKT  +V  +I+        QL  Y + L+ +Y
Sbjct: 883 LTDGALGVVDYKTGKNVF-DIQKFYNGLSPQLVTYLEALRQTY 924


>gi|229012072|ref|ZP_04169251.1| UvrD/Rep helicase [Bacillus mycoides DSM 2048]
 gi|228749160|gb|EEL99006.1| UvrD/Rep helicase [Bacillus mycoides DSM 2048]
          Length = 700

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 21/163 (12%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 467 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 515

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 516 --IEDWNAFKEVFQEAGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPV 565

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             +         +    ++ + +    +           +  +
Sbjct: 566 FRSGEDVKVIRAEDQFTEVLKTLQHLQNEDVKTIAVIGRTDDE 608


>gi|228959044|ref|ZP_04120745.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228800705|gb|EEM47621.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 691

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 106/322 (32%), Gaps = 57/322 (17%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           + W      V DI K++ +  E  +  + K+ + L    +           L  F  T +
Sbjct: 329 EAWDRAIIPVEDIKKWMQV--EYKHYPLQKRRERLVGRMK-----RWIEIELKKFGETNE 381

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K   T+ +N               +   +    +  K  +         + L    
Sbjct: 382 KKLLKKEATKRLNAYMK--------FWPKMSALSLYSSIVKSKEILEVLP---EELVKET 430

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLIQ 192
           E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  Q
Sbjct: 431 EKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQ 478

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             V++ +T              +   +GD  Q+IY + G   +     K + Q+      
Sbjct: 479 VYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY--- 522

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 EL  S+RST +I+   +++    E   GL+     +         +    ++ +
Sbjct: 523 -----YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGEDVKVIHEENQFTEIVK 577

Query: 313 QVVSQHDSQCNPQQESWTSYFD 334
            V    ++          +  +
Sbjct: 578 TVKHLQNADVKTIAVIGRTEDE 599


>gi|118380926|ref|XP_001023625.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89305392|gb|EAS03380.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 1027

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 83/220 (37%), Gaps = 55/220 (25%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            + +H   DE QD + IQ+ ++    ++             + A+GDE Q+IYSF  ++ 
Sbjct: 138 NQYSHFFFDEFQDINDIQYNILMEFCKN----------NCKIIAIGDEAQNIYSFRNSKL 187

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           + + ++  ++     N  QK +I +L ++FRS + I+   +++         + + +   
Sbjct: 188 EFIQKKIDVDVDNYQN--QKINIYQLSINFRSQSKIVEFCNQILV------SMKQSNQMK 239

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              +S +  +   V+++                             S      +I   I 
Sbjct: 240 SAKQSLQEEEKPIVKIY----------------------------QSEQEQYEKIIKEIY 271

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           +++  D           Q  DI +L  + ++   I  + +
Sbjct: 272 DLVKKD---------KYQLSDIAILSPRNEEIKHIQAILQ 302


>gi|332176243|gb|AEE25496.1| putative DNA repair protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 856

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 57/529 (10%), Positives = 150/529 (28%), Gaps = 65/529 (12%)

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF-----SEDDIFKIC 457
               +    ++    I     +     +  D  +   ++ SP          +  +F + 
Sbjct: 269 PYNVSAGTPMSSQPIIMLAKKILTLGAASTDVATLRSIVMSPFIGNSESESGKRALFDLT 328

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR--- 514
            Q   TE     +     C       V +++  +    +  +  ++      A       
Sbjct: 329 LQEVPTELSLSQMVSLERCPPKLMASVKQFLKIMNDAPERDTVGNWLKRFESALFAIGWP 388

Query: 515 -QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
            ++  +    + +   +E L+    +      +    I            A  +    ++
Sbjct: 389 GERLPNSKEYQALKQHNELLHRLCSHYNTDTVTRDTAIYYYHLALSNTLYAAESKDCPIQ 448

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           ++ V  A GL    ++++D    V+  K      +   L  + G+P              
Sbjct: 449 VLGVLEAAGLTFDYIYILDMNDTVWPAKATPTPFLPELLQIEHGMPH------------- 495

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                   S + E+ ++L     R+ + LI    +     K +               + 
Sbjct: 496 -----SDASRELEFAKVLDNRFKRSCNSLIYSYCNTEKERKLTPS--------IFAVGEH 542

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
               +   N +N  + +  +      ++  +  E  +                   +   
Sbjct: 543 LSGNVFKVNELNHIDLLYKQIPVKVLQDDMVPLETEVATGGV-----------SLLEDEA 591

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----------IFTLPEHKRKN 803
               +           +  +        RG+I+H++L+           +  L + +R  
Sbjct: 592 RCPFSAFVKHRLKVAEMPVVRMGFSPQQRGIILHEVLEYFWEDMKTHEALVQLTQEERAQ 651

Query: 804 FITSYCTKNAKLWPAKEY--KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN----C 857
            +     +    +  KE     L+    +LL + ++   +  +      +  ++      
Sbjct: 652 KVLQSIERAFSAFTTKEDISSTLIEMEVQLL-SKVIDKWLDIEVQRPAFIVEELEQKKIV 710

Query: 858 PKKDIIISGRIDQ--ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
               + I  RID+    I    +    YK+   +  +++H       QL
Sbjct: 711 TIGPLTIRIRIDRKDRLIDNDRVVFIGYKSGSAIANKLDHAAGLTDVQL 759


>gi|325291020|ref|YP_004267201.1| DNA helicase/exodeoxyribonuclease V, subunit B [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966421|gb|ADY57200.1| DNA helicase/exodeoxyribonuclease V, subunit B [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 1147

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 82/760 (10%), Positives = 201/760 (26%), Gaps = 140/760 (18%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +F+  + A           R    +   + T  L     S   +       ++      
Sbjct: 243 DIFAPTKEAYHKLVKVAQASRTEMEKPLLLETAHLPRFKNSSELAHLERYLNTYPYQTYD 302

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
              +  A   A  I   I        I    + + ++ +DI V+            +   
Sbjct: 303 SKTKDIALFSAANIFSEIEA--AARDIIRQCRDQNMRFRDITVVAGNLDKYQSFIEII-- 358

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
              +Y I    + +  +T+H  ++ L+A+           +    LK+ L    ++ I +
Sbjct: 359 -FAEYGIPYFLDRKVEITNHPLVRLLLAMLDIFGENWSYEAVFRYLKTGLSGIEQEKIDR 417

Query: 456 ICT---QRHETETVYEYIQKFANCGI--------SKFQHVIKYIHELI------------ 492
           +           + +   +++              +++  ++ I+ +             
Sbjct: 418 LENYVLACGIRGSRWTKQEEWTMSPDFLPDEKSSGQYREQLEEINRIRLEVAGPLQEFRG 477

Query: 493 ---HIAQFCSPHDFFTLILGAKKGRQQF--------------ISRFGNEVIDVLDEFLNF 535
                 Q           L       +               ++    +V ++L E  + 
Sbjct: 478 KTKGRRQTAEICTAVYDFLCRIGVPAKLEQSIAEFRQSGEVNLASEYAQVWNILMEVFDQ 537

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTG 594
            +    +   SL+     L+      K        ++V + +   +K  +   ++++   
Sbjct: 538 IVEIMGDEKLSLKRFADILKTGLAQFKVGLIPASLDQVLVGSPERSKSHKIKALYVLGVN 597

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             VF    IK+  +        G         +R     +               L+Y  
Sbjct: 598 DGVFPSAIIKENILSDPDRAVLGKTGIELAKDTRTQAFDEQY-------------LIYKV 644

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH-------------NDERVKKIKLT 701
           +T + + L +         K          +   F                E ++ I   
Sbjct: 645 LTTSGNYLRLSWPIADQEGKTLRPSIIISRIRKLFPMVAETGNVLTSTAGAEELELITGQ 704

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREE--TIKQLMDEQKIPKKLFSP------------- 746
            S       A        E + L R+         + +   + + +              
Sbjct: 705 ASAFSQMVQALRRKADGREISRLWRDTCIWFAGQEEWRDRCRAVRAAFLYKNIAPPISGD 764

Query: 747 -IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF-----------NRGLIIHKLLQVIF 794
            +     +P   + S ++          +                 + G  +H +++   
Sbjct: 765 KVAALYGQPAYASVSRLERYTACPFAFYVQYGLGAKERKIYRFSPPDVGTFMHGVIEAFS 824

Query: 795 TLPEHK---RKNFITSYCTKNAKLWPAK---------------------EYKNLLLSITR 830
                +    +     +C         +                       K +L+   R
Sbjct: 825 RQVAEQALSWRELDKEWCEIKVSQIVDEMLAKMQGTGLAASKRYTALTMRLKRVLVRAVR 884

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCP--------KKDIIISGRIDQIS---ISQQNIF 879
           L+   +  +      Y E+  S   + P         + I + GRID++     ++    
Sbjct: 885 LIAEHIRRSGFEPLGY-EMDFSESGDFPPIVIELESGEKIHLVGRIDRVDALKTAEGTYL 943

Query: 880 -IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            I +YK++ +   ++  + Y    QL  Y       + NK
Sbjct: 944 RIVDYKSN-NKEFKLADVYYGMQIQLMTYLDA---IWENK 979


>gi|256376349|ref|YP_003100009.1| RecB family exonuclease-like protein [Actinosynnema mirum DSM
           43827]
 gi|255920652|gb|ACU36163.1| RecB family exonuclease-like protein [Actinosynnema mirum DSM
           43827]
          Length = 297

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 70/234 (29%), Gaps = 32/234 (13%)

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIH 787
              + +       +       L+PS      +  L               +   RG ++H
Sbjct: 3   WPTVLRMAAPTTSDRPVRRPALSPSRAGDFKQCPLLYRFRAVDRLPEKPTKAQVRGTVVH 62

Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY- 846
            +L+ +F LP  +R         + A     +E            +        S     
Sbjct: 63  AVLEDLFALPAAERVPERARELVEPAWARVRQERPEFAELFGADQDEEQADWLTSARELL 122

Query: 847 ----------------SEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHV 889
                            E+ V  ++      +++ G +D++ ++    I + +YKT    
Sbjct: 123 EGYFGLEDPRRFDPESRELLVEWELPS---GVLLRGYVDRVDVAPTGEIRVVDYKTGAAP 179

Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
            + +E      + Q+  Y  +L            L+Y+++ +      ++   A
Sbjct: 180 REHVEGKA---LFQMKFYALVLWRQRGVVPRQLRLMYLADRQALAYSPDEGELA 230


>gi|228921481|ref|ZP_04084804.1| UvrD/Rep helicase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228838254|gb|EEM83572.1| UvrD/Rep helicase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 691

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 96/276 (34%), Gaps = 57/276 (20%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           + W      V DI K++ +  E  +  + K+ + L    +           L  F  T +
Sbjct: 329 EAWDRAIIPVEDIKKWMQV--EYKHYPLQKRRERLVGRMK-----RWIEIELKKFGETNE 381

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K   T+ +N               +   +    +  K  +         + L    
Sbjct: 382 KKLLKKEATKRLNAYMK--------FWPKMSALSLYSSIVKSKEILEVLP---EELVKET 430

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLIQ 192
           E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  Q
Sbjct: 431 EKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQ 478

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             V++ +T              +   +GD  Q+IY + G   +     K + Q+      
Sbjct: 479 VYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY--- 522

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
                 EL  S+RST +I+   +++    E   GL+
Sbjct: 523 -----YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|270307980|ref|YP_003330038.1| hypothetical protein DhcVS_558 [Dehalococcoides sp. VS]
 gi|270153872|gb|ACZ61710.1| hypothetical protein DhcVS_558 [Dehalococcoides sp. VS]
          Length = 379

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 64/197 (32%), Gaps = 25/197 (12%)

Query: 755 YILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFTL---PEHKRKN 803
             L+ S ID      L+                F+ G  +H   +  F +   P    + 
Sbjct: 2   RPLSYSQIDQYLSCPLKYRFLYIDGLKPLEKGYFSFGTTLHDCAEHFFRIKVPPPPSLEK 61

Query: 804 FIT--SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
            +       ++      +  +N       +L         S D +  ++V  +       
Sbjct: 62  MLEYYRLHWRSEGYESVEAEENYRQLGKEIL--AEFCRIHSADFHMPLAVEYQYTVNLDG 119

Query: 862 IIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHI---AQLSIYEKILKDSYPN 917
           + ++G+ID++  +    + I +YK++       +     ++    QLS+Y+  ++  +  
Sbjct: 120 VKLTGKIDRVDKLLSGELCIVDYKSNK------DLFSSEYVQNNLQLSLYQLAVEQIWFL 173

Query: 918 KSLVCLLIYVSEPKVFI 934
                 L ++       
Sbjct: 174 PVGELCLYHLRSNTAMR 190


>gi|261225551|ref|ZP_05939832.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia
           coli O157:H7 str. FRIK2000]
          Length = 237

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
            A  ++         ++ +LL    LT+       ++ Q++     + K  LK       
Sbjct: 97  AALGMKANFSLFDDTDQLALLKE--LTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAA 154

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAW 168
           + +   +             +  +    Y+   K   VLDF+DLI+    LL++ +    
Sbjct: 155 EAKGERD------------RIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEE--- 199

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +R +   +I ++L+DE QDT+  Q+E+++ L  
Sbjct: 200 VRERWQNKIRYLLVDEYQDTNTSQYELVKLLVG 232


>gi|3142726|gb|AAC16890.1| exodeoxyribonuclease V subunit [Photobacterium profundum SS9]
          Length = 260

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/185 (9%), Positives = 49/185 (26%), Gaps = 41/185 (22%)

Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT----KNAKLWPAKEYKNLLLSITR 830
           +  +    G  +H + + I           + +       +N  L      + L+  +  
Sbjct: 23  TFPRGARPGTFLHTVFEEIEFTAPVDSPETVATLTDLLQKENYDLVWLPVLQQLIKDVLN 82

Query: 831 LLENPMMTTAMSC---DSYSEVSV-------------------------SGKINCPKKDI 862
              +      +        +E+                           +G++       
Sbjct: 83  CSLDGQGMKLVDKNPSQRLTEMEFLLPITLLSSRMLNKVIAKHDTVSAKTGELGFATVSG 142

Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQE---------IEHIPYTHIAQLSIYEKILKD 913
           ++ G ID +       ++ ++K++H                   + +  Q  IY   L+ 
Sbjct: 143 MLKGFIDLVFEHDGKYYVLDWKSNHLGDDPSVYRGAQLVEAMRDHRYDLQYQIYALALQR 202

Query: 914 SYPNK 918
              ++
Sbjct: 203 FLRSR 207


>gi|311742505|ref|ZP_07716314.1| RecB family exonuclease [Aeromicrobium marinum DSM 15272]
 gi|311314133|gb|EFQ84041.1| RecB family exonuclease [Aeromicrobium marinum DSM 15272]
          Length = 298

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 61/227 (26%), Gaps = 30/227 (13%)

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQ 791
                +           L+PS         L                   RG ++H +L+
Sbjct: 1   MDDFVADDPTPAVFRARLSPSRAGDFQTCPLLFRFRTIDRLPEPASPVMARGTLVHAVLE 60

Query: 792 VIFTLPEHKR---------------KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
            ++  P   R                        +        +    L S   LL +  
Sbjct: 61  HLYDAPAEARTLEAATAMLPDAWQTLQAEDERLQELFDAGRPDDQAAWLASAAELLGS-- 118

Query: 837 MTTAMSCDSYSEVSVSGKIN-CPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIE 894
                        +   ++       + + G +D++ ++    I I +YKT        E
Sbjct: 119 YFALEDPTRLEPAARELRVEHVLDDAVTLGGIVDRLDVAPDGRIRIVDYKTGRSPDPRFE 178

Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
                 + Q+  Y  ++  S      +  L+Y+ + +V      + +
Sbjct: 179 ASA---LFQMKFYALVVWRSRGVLPTLLQLMYLGDRQVLQYTPTESD 222


>gi|206971777|ref|ZP_03232726.1| UvrD/Rep helicase family protein [Bacillus cereus AH1134]
 gi|206733162|gb|EDZ50335.1| UvrD/Rep helicase family protein [Bacillus cereus AH1134]
          Length = 691

 Score = 75.7 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 106/322 (32%), Gaps = 57/322 (17%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           + W      V DI K++ +  E  +  + K+ + L    +           L  F  T +
Sbjct: 329 EAWDRAIIPVEDIKKWMQV--EYKHYPLQKRRERLVGRMK-----RWIEIELKKFGETNE 381

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K   T+ +N               +   +    +  K  +         + L    
Sbjct: 382 KKLLKKEATKRLNAYMK--------FWPKMSALSLYSSIVKSKEILEVLP---EELVKET 430

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLIQ 192
           E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  Q
Sbjct: 431 EKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQ 478

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             V++ +T              +   +GD  Q+IY + G   +     K + Q+      
Sbjct: 479 VYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY--- 522

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 EL  S+RST +I+   +++    E   GL+     +         +    ++ +
Sbjct: 523 -----YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGEDVKVIHAENQFTEIVK 577

Query: 313 QVVSQHDSQCNPQQESWTSYFD 334
            V    ++          +  +
Sbjct: 578 TVKHLQNADVKTIAVIGRTEDE 599


>gi|227537680|ref|ZP_03967729.1| possible UvrD/REP helicase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242294|gb|EEI92309.1| possible UvrD/REP helicase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 395

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 20/122 (16%)

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              LL+       I   +      I+IDE QD SLIQ  +   L +            + 
Sbjct: 212 ALHLLRNNP---KICQWLSLRFPFIIIDEAQDNSLIQHAIFEELVKQGL---------KN 259

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +  +GD  QS+Y +  A+P       R  +       Q +   +L  + RS   I+ V  
Sbjct: 260 IELIGDPYQSLYEWRDAKPD---EFLRKYESD-----QTWQSYDLTDNRRSPQSIIDVFS 311

Query: 276 KV 277
           KV
Sbjct: 312 KV 313


>gi|315653554|ref|ZP_07906474.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC
           55195]
 gi|315488916|gb|EFU78558.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC
           55195]
          Length = 428

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 83  NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 305 SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 358

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWI-RYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           K+KN ++DF D+      +L     ++ + R     + + IL+DE QD + +Q ++I+ +
Sbjct: 359 KRKNNIIDFNDMEQFAYKILTSNSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 418

Query: 200 TE 201
            E
Sbjct: 419 KE 420


>gi|239617416|ref|YP_002940738.1| ATP-dependent nuclease subunit B-like protein [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506247|gb|ACR79734.1| ATP-dependent nuclease subunit B-like protein [Kosmotoga olearia
           TBF 19.5.1]
          Length = 1030

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 87/765 (11%), Positives = 195/765 (25%), Gaps = 141/765 (18%)

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
              +    E  +G  + +   I      + +     L + +     +  + Q+ + +   
Sbjct: 226 ARTIIDFVEEREGKIDSNGEIITSEKRFLSEQ---HLPKNLEPFLKTFFSEQKITQSCEN 282

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
             +   S        I+  I   I +            +  DI ++     D      L 
Sbjct: 283 VEVIVASDIFNEVEYISREIKRTIKSG----------YEPGDIAIVA---SDFSRYEKLF 329

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
               ++Y I         L +  A+K L+      ++         ++    F +    +
Sbjct: 330 SERLDEYGIPFRSEGDEPLLESRAVKMLLLPFETAVN---GFKPEKIVAMGDFGYGGSKL 386

Query: 454 FKIC------TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
                       R   +     +QK       + +   + +   I   +  S  +F    
Sbjct: 387 DTKFFESIAIQARLIYDYPTLTLQKRVESWEERLERYKELVQRKIRAVEEISDEEFIEQ- 445

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN----------------EQNSYSSLQELI 551
                G ++ I R   E+   ++                         E +    ++E  
Sbjct: 446 --EISGYREVILRVDEEIEPAIERIFQVLAPFRSLSRRDCRIYREYFYEWSELIRIEERY 503

Query: 552 SELEQYPPTIKRAHSANH------------------NEVRIMTVHTAKGLESPVVFLVDT 593
            +L +                                 +  +        +     ++  
Sbjct: 504 RKLVEESEEEPFRKLEGERELLALKRFFNDVLPALEELLLFLGKERISPADYHRYLMLIL 563

Query: 594 GSQVFSHKH-----------------IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            +  F                      KK+      ND     I +    S         
Sbjct: 564 RNTSFKSSRAIENRVEIQSLLNARFSRKKIKFFVGFNDGYYPMIRMNPLYSFTQYDEKAP 623

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV----------- 685
           K L    +++    LY+ +TR SD+L      +T + +      +   V           
Sbjct: 624 KDLLLVKEKQQKLNLYLAVTRTSDRLYFSYPESTIDGEPLLPSAYLQDVIKSAGVTPERV 683

Query: 686 --YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE--REETIKQLMDEQKIPK 741
              +    D   +   + +       +A  ++T H ++        +  K L    +   
Sbjct: 684 GQKEGRKVDIIPELETVMSEKELKIAVANYFNTGHWKSLKDRFGMGDLEKVLQGFNREFT 743

Query: 742 KLFSPIKNDINEP-YILNPSTIDTKGKTNL-------------ESLLSDNQTFNRGLIIH 787
            + S  K   +    + + S + +  K                E  L +      G + H
Sbjct: 744 WIISNRKKIEDHIGKVFSFSRLQSYHKCPFSFYLAYILKIQTPEEGLFELTPLEEGNVYH 803

Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
            +L+  F+      +  +     K  +      +K     + R++               
Sbjct: 804 NVLKDYFSKSALDWEKSLEENMRKYIRHDSELVFKFEYERLRRVI--AEYIQIKESKKLP 861

Query: 848 EVS-------VSGKINCPK-------KDIIISGRIDQISISQQN--IFIFEYKTHHHVPQ 891
           +V                        +D  I G+ID+I + +    ++I +YK       
Sbjct: 862 KVEGEFEPTYFELGFGMGNQKPVKVLEDAYIRGKIDRIDVDKDTGAMYIMDYK--RGNSG 919

Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
           E E        QL +Y     +    K       +V       + 
Sbjct: 920 EKE--------QLILYSIAANELLKEKG-----YFVVGGSFRPLS 951


>gi|323957243|gb|EGB52966.1| recB protein [Escherichia coli H263]
          Length = 321

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 58/208 (27%), Gaps = 44/208 (21%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
           I  D+     ++ + + +  +    +     +  + G  +H L + +         N++ 
Sbjct: 57  IAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPID-PNWVQ 115

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPK- 859
                    +  +    L   IT +L+ P+      +      D   E+     I+ P  
Sbjct: 116 EKLELGG--FEPQWELVLTEWITAVLQAPLNETGVSLNQLSDRDKQVEMEFYLPISEPLI 173

Query: 860 -------------------------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
                                       ++ G ID +   +   ++ +YK++        
Sbjct: 174 ASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSA 233

Query: 895 ---------HIPYTHIAQLSIYEKILKD 913
                       + +  Q  +Y   L  
Sbjct: 234 YTQQAMAAAMQAHRYDLQYQLYTLALHR 261


>gi|86741325|ref|YP_481725.1| RecB family exonuclease [Frankia sp. CcI3]
 gi|86568187|gb|ABD11996.1| putative RecB family exonuclease [Frankia sp. CcI3]
          Length = 303

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 64/230 (27%), Gaps = 29/230 (12%)

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLP 797
                      L+PS         L              ++   RG ++H +L+ +F LP
Sbjct: 15  ASAAPRPLIGSLSPSRAADFVNCPLRYRFRVVDRLPEPPSEAATRGTVVHAVLEKLFDLP 74

Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNL------LLSITRLLENPM--MTTAMS---CDSY 846
             +R         + A          +         +   LE+    +    +       
Sbjct: 75  ASRRTLQAARELVEPAWDTVRAREPAVEALFGGRDELAAWLESARELLAGYFALEDPSRL 134

Query: 847 SEVSVSGKIN-CPKKDIIISGRIDQISIS----QQNIFIFEYKTHHHVPQEIEHIPYTHI 901
           + V+    +       + + G +D++  +       + + +YKT        E      +
Sbjct: 135 APVARELYVEHVLDSGLRLRGYLDRLDEATTAQGPALRVVDYKTGRSPGPAFESSA---M 191

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
            Q+  Y  +L            L Y+ +        ++ +        +I
Sbjct: 192 FQMKFYALLLWRIRGVIPRELRLYYLGDRTWLRATPDEAD--LRAAERRI 239


>gi|117928387|ref|YP_872938.1| RecB family exonuclease [Acidothermus cellulolyticus 11B]
 gi|117648850|gb|ABK52952.1| putative RecB family exonuclease [Acidothermus cellulolyticus 11B]
          Length = 266

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 66/215 (30%), Gaps = 36/215 (16%)

Query: 756 ILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
            L+PS         L              +    RG ++H +L  +F LP  +R   +  
Sbjct: 2   ALSPSRAADFMTCPLLYRLRCIDRLPEPPDPVSVRGTLVHAVLDQLFDLPPAER--VLEK 59

Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPM----------------MTTAMS-CDSYSEVS 850
                ++ W  +E       +  L  +P                 +    +  +      
Sbjct: 60  ALALVSRSW--QELCAARPELADLFADPEMPPSSCDDWLASAADLLRRYFTIENPTRIQP 117

Query: 851 VSGKINCP---KKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
              ++         I + G +D++ ++    + I +YKT    P+  E      + QL  
Sbjct: 118 TERELLVETQLADGIRLRGFVDRLDVAPTGEVRIVDYKTGVAPPESFEEKA---LFQLKF 174

Query: 907 YEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLN 941
           Y             +  LIY+ + +V      + +
Sbjct: 175 YALAWWRVNGVVPALLQLIYLGDGQVLRYAPEEAD 209


>gi|317061678|ref|ZP_07926163.1| ATP-dependent helicase [Fusobacterium sp. D12]
 gi|313687354|gb|EFS24189.1| ATP-dependent helicase [Fusobacterium sp. D12]
          Length = 495

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/435 (12%), Positives = 135/435 (31%), Gaps = 64/435 (14%)

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
             +  L  S+RS   I+   ++ F    +   L ++     +   S+  +    ++    
Sbjct: 53  AEVEHLDTSYRSLESIVEFCNEFFK---SYPALYQEEAIEWKFLESKSHKQKRGEVLSYF 109

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
           +S+ DS                                +  ++       +G        
Sbjct: 110 LSEEDS--------------------------------LQALLSMIEEKYSG-----NYG 132

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
            + +L RK K    +       K    +    +      D   +   ++L R+  S  + 
Sbjct: 133 SLSILARKNKTLLQLADFLEEHK----LPYQLSIVKEQQDEEIVSSFLSLFRYFCS-NEY 187

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
           L  +   +SP+   S   +  + T +        + +++        + + +   E    
Sbjct: 188 LYLLEFFRSPVIKASNRILKNLLTHQENMIQYICFGKEWKEKPKGS-EEIFELYREFQE- 245

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
                  D +   +      ++F             E L++        Y +  E + +L
Sbjct: 246 -NEGKIGDLWLHCIEKFSLPERFSKDSHLLAYYSFQESLSY--------YDTWFEYLEDL 296

Query: 555 EQYPP-TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           ++     +      N N +++M++H +KGLE   V   +   +    K    +      +
Sbjct: 297 DRNRLPKLDIREEENKNAIQLMSIHKSKGLEFENVIYFEPKEKRKGRKEQNILFYFQMAD 356

Query: 614 DDPGIPIWIPQS-------KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
           D   +  +           +       + +K L++  +EE    LYV +TRA   L +  
Sbjct: 357 DYCSLEHYFLTKGKYRKYMEYLPKPFPNYLKDLERKEKEEEINTLYVALTRAKHNLYLFF 416

Query: 667 HSNTSNEKKSNQRTW 681
           +      +   + ++
Sbjct: 417 NETFQGRELLEKLSF 431


>gi|254464697|ref|ZP_05078108.1| double-strand break repair protein AddB [Rhodobacterales bacterium
           Y4I]
 gi|206685605|gb|EDZ46087.1| double-strand break repair protein AddB [Rhodobacterales bacterium
           Y4I]
          Length = 977

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/455 (10%), Positives = 119/455 (26%), Gaps = 56/455 (12%)

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
             +                  +  + +L       S  D    +   K G+         
Sbjct: 464 GWLSACFADQEIAETLPLTDWVNRLRDLAERIAAGSQADGSGTLWDKKAGQAALA----- 518

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKG 582
             I+ L+               + ++    L         R   A +  + I     A+ 
Sbjct: 519 -CIENLE------TEAPYGGGMTARDFADLLGALLSQGEVRDRDAPYGSIMIWGTLEARV 571

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
             + +V L       +         +   L +  G+ +   +     +     I      
Sbjct: 572 QGADLVILGGLNEGSWPEAASPDPWLNRQLRNQAGLLLPERRIGLSAHDFQQAI------ 625

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                          A+ ++ +     +          W + + +              +
Sbjct: 626 ---------------AAPEVWLTHAERSEEADTVP-SRWLNRLTNLLSGLPEQGGRAALD 669

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPST 761
           ++         W+    E TP+ +             P++L  + I   I +PY +    
Sbjct: 670 TMRSKGRRWLGWAEALEEPTPIPQYPRPSPCPPVAARPRRLTITEIPRLIRDPYAIYAKH 729

Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
           +       L  L+ +     RG+++H++ +      +         +     +       
Sbjct: 730 V--LRLKPLSPLVQEPDALLRGIVVHEVFEHFIKDAQTDPSLLTAGHLIGKTRELLETHV 787

Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSE---------VSVSGKINCPKK--DIIISGRIDQ 870
                 + R+L +  +         +E         V+   K +      D  I+ R D+
Sbjct: 788 PWP---VARILWHSRIRKIAGDFVLAEQERQARARPVAFEAKGSARLDPLDFTIACRADR 844

Query: 871 ISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           I +  +  + +++YKT        E        QL
Sbjct: 845 IDMDDRGFLHLYDYKTGTPPS---EAQQKKFEKQL 876


>gi|147669238|ref|YP_001214056.1| exonuclease-like protein [Dehalococcoides sp. BAV1]
 gi|146270186|gb|ABQ17178.1| RecB family exonuclease-like protein [Dehalococcoides sp. BAV1]
          Length = 379

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 63/203 (31%), Gaps = 31/203 (15%)

Query: 755 YILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFTL--PEHKRKNF 804
             L+ S ID      L+                F+ G  +H   +  F +  P       
Sbjct: 2   RPLSYSQIDQYQSCPLKYRFLYIDGLKPLEKGYFSFGTTLHDCAEHFFRVKVPPPLSLEK 61

Query: 805 ITSYCTKN------AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
           +  Y   +        +   + Y+ L   I               D +  ++V  +    
Sbjct: 62  LMEYYQSHWRSGGYESVEIEENYRQLGREILA-----EFHRIHRADFHMPLAVEHQYTVN 116

Query: 859 KKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI---AQLSIYEKILKDS 914
              + ++G+ID++       + I +YK++       +     ++    QLS+Y+  ++  
Sbjct: 117 LDGVKLTGKIDRVDKLPSGELCIVDYKSNK------DLFSAEYVQDNLQLSLYQLAVEQI 170

Query: 915 YPNKSLVCLLIYVSEPKVFIIPQ 937
           +        L ++        P 
Sbjct: 171 WYLPVGELCLYHLRSNTAMRCPA 193


>gi|312873037|ref|ZP_07733097.1| conserved domain protein [Lactobacillus iners LEAF 2062A-h1]
 gi|311091559|gb|EFQ49943.1| conserved domain protein [Lactobacillus iners LEAF 2062A-h1]
          Length = 222

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 83  NIITQEINKKSPDLKE--KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
           +    +   +   L     +   +++   +       K       +          + + 
Sbjct: 96  SEFKAKCQDQLKKLFASFFITDEKEQLELLAKAQKLVKTISKVELT------FINEFGKL 149

Query: 141 KKKNCVLDFEDLIINTNDLLK-KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           K+KN ++DF D+      +L    + S   R     + + IL+DE QD + +Q ++I+ +
Sbjct: 150 KRKNNIIDFNDMEQFAYKILTSDSNNSDLARSYYQNKFSEILVDEYQDVNELQEQIIQVI 209

Query: 200 TE 201
            E
Sbjct: 210 KE 211


>gi|229060485|ref|ZP_04197848.1| UvrD/Rep helicase [Bacillus cereus AH603]
 gi|228718868|gb|EEL70489.1| UvrD/Rep helicase [Bacillus cereus AH603]
          Length = 700

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 467 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 515

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 516 --IEDWNAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPV 565

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    +           +  D           A     
Sbjct: 566 FRSGEDVKVIRAEDQFTEVLKTLQHLQNEDVKTIAVIGRT-DDECRDIYEKLTDAGLTVN 624

Query: 352 TISN 355
            I  
Sbjct: 625 VIEA 628


>gi|327474834|gb|EGF20239.1| exonuclease RexB [Streptococcus sanguinis SK408]
          Length = 1093

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 65/669 (9%), Positives = 182/669 (27%), Gaps = 91/669 (13%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
             +  ++     + +   + +           +               + KDI +L+   
Sbjct: 275 ESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDGARYKDIRLLL--- 331

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            D        + + + Y+I         +  H  ++ + +L R           + +LK+
Sbjct: 332 GDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQLEDLLNLLKT 391

Query: 444 PLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            L+   +++++          +              S+ +  +  ++ +           
Sbjct: 392 GLYGGLTQEELDHFEQYLRFADIKGSAKLAKDFTANSQGKFDLDRLNHIRRRVMTPLQDF 451

Query: 503 FFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
           F +    A     +F   F      D L   L    + EQ  +  + +  S + +    +
Sbjct: 452 FKSRSQTASGLLAKFTEFFQAARLSDNLTALLQGESQQEQERHEEVWKAFSHVLEQFAQV 511

Query: 562 KRAH-----------------------SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                                       A  + V++ +    + L +P V+ +    + F
Sbjct: 512 FADSKVKLDDFLALVLSGMLLSNYRTVPATVDVVKVQSYDLIEPLAAPYVYAIGLTQERF 571

Query: 599 SHKHIKKMHIMPSL----------NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                 K  +                +  I       K+R   +S +    K+       
Sbjct: 572 PKIAQNKSLLSDEDRARLNDATDSQAELQIASSENLKKNRYTALSLMNSATKELVLSAPA 631

Query: 649 RLLYVGMTRASDQLIICKH-------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            +  V  + ++  L +                   +  ++  ++       +     + T
Sbjct: 632 LVNEVEDSMSTYLLELTAAPLSLPIIVKKPQASSDDIGSYRALLSQIIELHQEEIDREWT 691

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                   +A            +   +  K+L  E   P+ L +    +  +P  L+ S 
Sbjct: 692 AEEQTFWAVAVRVLRKKLAAEGISIPQISKELKTESLQPETLQALYPQE--QPLRLSASA 749

Query: 762 IDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSY 808
           ++   +              E         + G+ +H++ + +    L     +    + 
Sbjct: 750 LNEYFRHQYAYFLKYVLRLQEEWTIHPDARSHGIFLHRIFEKVLQDDLSADFDRRLARAM 809

Query: 809 CT-----KNAKLWPAKEYKNLLLSIT--------RLLENPMMTTAMSCDSY---SEVSVS 852
                  +   ++           +         R+L +P     +  ++    +     
Sbjct: 810 EETSREAEFESIYSESGQTRFARQLLLDTARATGRVLAHPTGIETIGEETGFGSASKPF- 868

Query: 853 GKINCPKKD-IIISGRIDQISISQQNIF------IFEYKTHHHVPQEIEHIPYTHIAQLS 905
             +       + +SG++D+I      +       + +YK+        E       +QL 
Sbjct: 869 --LTLENGRAVTVSGKVDRI----DRLTKTESLGVVDYKSGDIKF-SFEKFFNGLNSQLP 921

Query: 906 IYEKILKDS 914
            Y   +++ 
Sbjct: 922 TYLAAIEEL 930


>gi|39939045|ref|NP_950811.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722154|dbj|BAD04644.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 846

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 30/154 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           L   Y E      ++ F+ L+I T    + +++ +   + R         + IDE QD +
Sbjct: 185 LLNLYYEKLNYYNLITFDGLLIETSDFIEFVERNNGLIYNRP--------VFIDEFQDLN 236

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              + +I+ L           + P +L+  GD  Q+IYSF G+    +    +       
Sbjct: 237 YFYYFIIKELL---------FNKPNSLYCFGDYTQNIYSFFGSSELILELFVKDF----- 282

Query: 250 NAGQKFSIIELPLSFRSTA-DILTVVDKVFSIPE 282
               K     L +++RS   +I+   +++    E
Sbjct: 283 ----KPEKHFLNVNYRSKGINIVKAANELIDNKE 312


>gi|327470753|gb|EGF16209.1| exonuclease RexB [Streptococcus sanguinis SK330]
          Length = 1093

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 64/643 (9%), Positives = 178/643 (27%), Gaps = 95/643 (14%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A +I   +             ++ KDI +L+    D        + + + Y+I    
Sbjct: 308 EYVAKSIRQRVHDG----------VRYKDIRLLL---GDVEAYQLQLKTIFDQYQIPYYL 354

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETET 465
                +  H  ++ + +L R           + +LK+ L+   +++++          + 
Sbjct: 355 GRSESMAQHPLVQFVESLERLKRYNFQLEDLLNLLKTGLYGDLTQEELDHFEQYLRFADI 414

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
                        S+ +  +  ++ +           F +    A     +F        
Sbjct: 415 KGAAKLAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAAR 474

Query: 526 -IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH------------------- 565
             D L   L    + EQ  +  + +  S + +    +                       
Sbjct: 475 LSDNLTALLQGASQQEQERHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSN 534

Query: 566 ----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL--------- 612
                A  + V++ +    + L +P V+ +    + F      K  +             
Sbjct: 535 YRTVPATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATD 594

Query: 613 -NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---- 667
              +  I       K+R   +S +    K+        +  V  + ++  L +       
Sbjct: 595 SQAELQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSVSTYLLELTAAPLSL 654

Query: 668 ---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                       +  ++  ++       +     + T        +A            +
Sbjct: 655 PIIVKKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGI 714

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LESL 773
              +  K+L  E    + L +    +  +P  L+ S ++   +              E  
Sbjct: 715 SIPQISKELKTETLQSETLQALYPQE--QPLRLSASALNEYFRHQYAYFLKYVLRLQEEW 772

Query: 774 LSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCT-----KNAKLWPAKEYKNLLL 826
                  + G+ +H++ + +          +    +        +   ++          
Sbjct: 773 TIHPDARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFAR 832

Query: 827 SIT--------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKD-IIISGRIDQISISQQN 877
            +         R+L +P     +  ++    + +  +       + +SG++D+I      
Sbjct: 833 QLLLDTARATGRVLAHPSGIETIGEETGFGSASTPFLTLENGRAVTVSGKVDRI----DR 888

Query: 878 IF------IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
           +       + +YK+        E       +QL  Y   +++ 
Sbjct: 889 LTKTESLGVVDYKSGDIKF-SFEKFFNGLNSQLPTYLAAIEEL 930


>gi|322370163|ref|ZP_08044725.1| UvrD/REP helicase [Haladaptatus paucihalophilus DX253]
 gi|320550499|gb|EFW92151.1| UvrD/REP helicase [Haladaptatus paucihalophilus DX253]
          Length = 608

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 74/532 (13%), Positives = 147/532 (27%), Gaps = 151/532 (28%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              + + K    ++ F D++                   +   +++++IDE QD + +Q+
Sbjct: 191 IRAWRKYKGDEGLVGFADMLERVKQ------------RSLLPSVDYLVIDEFQDITQLQF 238

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           ++     +              +   GD+ Q +Y++ GA+PK +L             G+
Sbjct: 239 DIYEEWKDHME----------NVLIAGDDDQVVYAWQGADPKLLL-------------GE 275

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + L  S R  + +L VV +  +  +  Q  +               + GTV+    
Sbjct: 276 GGEDVILDTSHRLPSRVLKVVQQEVTHIDERQEKNLKPRK----------EGGTVE---- 321

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                                   +  S   L R + YTI                    
Sbjct: 322 ----------------------AVENPSMLDLVRNVRYTIEE----------------FD 343

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
             ++VL R R               D  I      R +    +    L      +    +
Sbjct: 344 GTVMVLFRARYQMFRFVDEF----IDEGIPF----RTLTDQRMWTDRLNQYVDAVEQIHE 395

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
           D         P+       +  + T+        +                 +    +  
Sbjct: 396 DE--------PIDGLQARRLADMLTESTFGTNERD-----------------EMFDAIDE 430

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
             +     D   L   A   R       G +    +   +      ++ S  +       
Sbjct: 431 RKEEEEVDDLTELEFDADFVRNFAPFMPGPKSASDM---VRKVTSYQKRSMKAYFS---- 483

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL-VDTGSQVFSHKHIKKMHIMPSL 612
                    R    + + VRI T+H+AKG E+  VF+  D   +V         +    +
Sbjct: 484 --------GRYQDMDRSRVRIGTIHSAKGREADHVFIGTDLTEKVVEQMAATVENEGIDV 535

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                           +   R+ YVGM+RA ++L++
Sbjct: 536 PSVDEFTAGTDPVPILT---------------DNERRVFYVGMSRARERLVV 572


>gi|213400879|gb|ACJ47088.1| hypothetical protein [Wolbachia endosymbiont of Folsomia candida]
          Length = 157

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 9/152 (5%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++         G+ +   +L  SFRST ++L +VD++F+     +     + 
Sbjct: 1   NPHLFNYMQQYF--DMKTGGRDWISCQLEKSFRSTPEVLMLVDRLFNN---FRAEISFND 55

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             I+H   R    G +++W  +    + +    Q         +  +    +LA+R+A+ 
Sbjct: 56  NEIKHVPHRENDQGYIEIWPLLPKCKEEERQALQVPLACREGHIIAD---RLLAKRVAHK 112

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           I N +    I    K R I+ KDI++LVR+R 
Sbjct: 113 IHNWLHEGRIL-VAKDRHIEPKDIMILVRQRN 143


>gi|329910856|ref|ZP_08275391.1| ATP-dependent DNA helicase PcrA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546061|gb|EGF31133.1| ATP-dependent DNA helicase PcrA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 662

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 82/683 (12%), Positives = 178/683 (26%), Gaps = 103/683 (15%)

Query: 9   LNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
             E       +        +  + ++     +   + + L        + Q +      +
Sbjct: 60  AKERLAQKCAEEGAPRGIVIQTVEEFARQQVLNMASASYLDMPVFYDSSEQIRPHIVAAA 119

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
                             + + N++  DL   L + +   + +       +       SL
Sbjct: 120 EAVWQRYADAGVRTDFDFSFDSNERVEDLIRLLVRLKAGLVTLEFE---ARDTDEIAGSL 176

Query: 128 TLAKYLNAHYEEAKKKNCVLD---------FE---DLIINTNDLLKKRDVSAWIRYKIDQ 175
             +  + A  +E +++    D         F+   DLI     L +++  +  +      
Sbjct: 177 DESPEIIAICQEIERQRGA-DTGECAWQSPFDHATDLI----ALFRRQPEAVEVLP---- 227

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
                ++DE  D +  ++ +++ L                L  VGD  Q I +  GA+P 
Sbjct: 228 RFRICVVDEWHDVNAAEFALVQLLA-----------RHARLVVVGDRDQIINAERGADPA 276

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                          A        +  +FR  + + T+   +      +Q       T +
Sbjct: 277 LS-------SNGFDFAFPGAIRQAITRTFRFGSSVSTLAATMMRRDCVSQPGLSTKVTHL 329

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            ++           +     ++                  L   +     A +     + 
Sbjct: 330 SYQPGPENDCAAGVIATITAARE------------RKVVKLSDFAIVVRDADQSIEIENQ 377

Query: 356 MIGTDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           +I     +  +G    +   +IL+L                 K   +  V     +    
Sbjct: 378 LIDAGMPYRCSGFDSYLVRPEILMLRGLLHIATGSYATLVGDKPTCEKLVRSLGLYASAR 437

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             +  D  +L  F      +L      +  L   + +              V        
Sbjct: 438 FDSDVDFASLLAFDERLSPELKNERRWQEALRMITAEPATLESFFSGILCRVSSVDSAST 497

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEF 532
                +F  V++ +  +                L       +     G  +     +D F
Sbjct: 498 GRWKIRFAGVVETLRTMARTDTVVQLLTTAARQLDLVSATSRVFVSRGRADSATRSIDAF 557

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM--TVHTAKGLESPVVFL 590
           + F          S  + ++EL     +I +  +      ++   TV  AKG E P V +
Sbjct: 558 IRFAG---NRPDQSAFDFLAELATRQASISKKLNYLKGRAQLDLTTVQYAKGKEWPQVLI 614

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  F                                         + +   E  RL
Sbjct: 615 PYLERGQFP----------------------------------------RTANLGEERRL 634

Query: 651 LYVGMTRASDQLIICKHSNTSNE 673
           LYV MTRA   L + + +   + 
Sbjct: 635 LYVAMTRAMTALTLFEPAGQPSS 657


>gi|229128152|ref|ZP_04257134.1| UvrD/Rep helicase [Bacillus cereus BDRD-Cer4]
 gi|228655427|gb|EEL11283.1| UvrD/Rep helicase [Bacillus cereus BDRD-Cer4]
          Length = 691

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 106/322 (32%), Gaps = 57/322 (17%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           + W      V DI K++ +  E  +  + K+ + L    +           L  F  T +
Sbjct: 329 EAWDRAIIPVEDIKKWMQV--EYKHYPLQKRRERLVGRMK-----RWIEIELKKFGETNE 381

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K   T+ +N               +   +    +  K  +         + L    
Sbjct: 382 KKLLKKEATKRLNAYMK--------FWPKMSALSLYSSIVKSKEILEVLP---EELVKET 430

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLIQ 192
           E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  Q
Sbjct: 431 EKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQ 478

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             V++ +T              +   +GD  Q+IY + G   +     K + Q+      
Sbjct: 479 VYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY--- 522

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 EL  S+RST +I+   +++    E   GL+     +         +    ++ +
Sbjct: 523 -----YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGEDVKVIHAENQFTEIVK 577

Query: 313 QVVSQHDSQCNPQQESWTSYFD 334
            V    ++          +  +
Sbjct: 578 TVKHLQNADVKTIAVIGRTEDE 599


>gi|309776646|ref|ZP_07671622.1| UvrD/REP helicase subfamily [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915606|gb|EFP61370.1| UvrD/REP helicase subfamily [Erysipelotrichaceae bacterium 3_1_53]
          Length = 680

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 96/331 (29%), Gaps = 50/331 (15%)

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQE 432
            DI  L         +      L   +++    +           +KDL  +   ++  +
Sbjct: 342 SDIAFLY----HDAALAMPLLELFMQHQVPFHFHGSVKKFLQEPLVKDLCNIIELLIDPK 397

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
           D  +F  + +   F+ S+  + ++  +  + E+V  Y     +   +  +  +    E I
Sbjct: 398 DMRAFYEVYEKLGFDISKKVLLEVAERLRDDESVDVYQAMMESSYRAAGKKKLAASMENI 457

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
            +A     H   T IL     R + +          L        R          + ++
Sbjct: 458 RMASTLETHTMITFILDKLGYRARLLKANILMSESSLLALRVIAARY-----HDPAQFLN 512

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            L +    +        + +++ +V +A+G+E   V L+D     F              
Sbjct: 513 RLREMGEFLC----EPVSRIQLRSVASARGMEFSRVALLDCLGSTFP------------- 555

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                     L++   +   RL + G+TRA  QL          
Sbjct: 556 -----------------------RAGLQEEELQLERRLFFTGITRAKHQLEFFTSKRCDL 592

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +       Y++        +   +  +   
Sbjct: 593 TRLEISPFLYELHAPKEEEAKSAGERPVPQP 623



 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 67/222 (30%), Gaps = 21/222 (9%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
           +L++ Q +    R    + +   +              Y + K    + D +D++     
Sbjct: 143 QLRRLQRQISTCRSMMMSEREIAAINFEGMDFPAFMKAYAKFKNDRNIYDQDDILCECAR 202

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           +L        +         ++ ID+ Q+ S +   +I+ L           SS   L  
Sbjct: 203 ILMSTPA---VLQTFAARYQYVHIDDAQELSFVAHVIIKLLF----------SSDAQLMM 249

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           + D  Q +     A P+ +                +  I  L  ++R+   I  + ++  
Sbjct: 250 LADRDQCLDLDKAAYPQALDSFADTY--------TEARIERLEGNWRNNQTITALANEFL 301

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
              E     S + T  ++ +     +         VV     
Sbjct: 302 YKQEAGMQCSSEETCEVKFKGFAQLERMYEYALRMVVEDESD 343


>gi|296503349|ref|YP_003665049.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis BMB171]
 gi|296324401|gb|ADH07329.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis BMB171]
          Length = 691

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 21/163 (12%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWNAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             +         +    ++ + V    ++          +  +
Sbjct: 557 FRSGEDVKVIHAENQFTEIVKTVKHLQNADVKTIAVIGRTEDE 599


>gi|313682830|ref|YP_004060568.1| hypothetical protein Sulku_1707 [Sulfuricurvum kujiense DSM 16994]
 gi|313155690|gb|ADR34368.1| hypothetical protein Sulku_1707 [Sulfuricurvum kujiense DSM 16994]
          Length = 817

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/497 (10%), Positives = 119/497 (23%), Gaps = 77/497 (15%)

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
           + K   E           D  + IL  +   ++   +F       L         N Q  
Sbjct: 271 LYKNFEEFNEFYAQKVQEDLTSGILTYEG-IEEVKQQFLQIKKLHLRA--TKLRENTQKL 327

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
           + +  +    +                 + +   +         +  + T   VF  K  
Sbjct: 328 FDTKIDFKEMILSLAEETYIPPLKEDYGIWVAEPNQMTQHVFKHIIFIGTDLSVFPPKSK 387

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                 P   +              N+ +       +     E   +    +     +L 
Sbjct: 388 GNFLSTPDQREHYLGV--------DNSYLLSQYYFDQLRRNCESLHIS-TALQEGKKKLF 438

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           I          +              H+    +  +    ++                  
Sbjct: 439 ISPIITDLPVIRLEGYEMESENEYLLHHRRFHQDERFEEYVSSMHANETGHYDGLLSEHR 498

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
            E        ++E       +        EP ++             E      +  + G
Sbjct: 499 FESGVLSASSLNEYAKCPLRYLLTYQYGAEPLMI-------------ERDDDALEASDIG 545

Query: 784 LIIHKLLQVI--------------FTLPEHKRKNFITSYCTK---NAKLWPAKEYKNLLL 826
            I H + +V                T+P  +R   I +   +      +    +  N+  
Sbjct: 546 TIFHSIAEVFSKEVKAGSIDLGDEATIPIKERLQAIATDVHQSYIQKHIVDEGKTPNIFH 605

Query: 827 SITRLLENPMMTTAMSCDSYS----------------------EVSVSGK----INCPKK 860
            I  +L++ ++                                E          I   K 
Sbjct: 606 EI--VLDD-LLKGLFEEHHERGLLIRFLDYVYTNGKLEHFEKSEQRFLLDDDFMITADKD 662

Query: 861 DIIISGRIDQISIS-QQNI-FIFEYKTHHHVPQEIEHIPYTH----IAQLSIYEKILKDS 914
             I+ G ID+I +  +  I  + +YKT  +   +   +          QL +Y      +
Sbjct: 663 KAIVKGFIDRIDLDKENKILTVIDYKTGKYSKDKENRLIEEMGSFKQFQLPLYLLYASQA 722

Query: 915 YPNKSLVCLLIYVSEPK 931
           Y + ++   L+ + + K
Sbjct: 723 YADHTIDSYLLAMRDGK 739


>gi|229145385|ref|ZP_04273774.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST24]
 gi|228638224|gb|EEK94665.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST24]
          Length = 691

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 21/163 (12%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWNAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             +         +    ++ + V    ++          +  +
Sbjct: 557 FRSGEDVKVIHAENQFTEIVKTVKHLQNADVKTIAVIGRTEDE 599


>gi|190565609|ref|ZP_03018529.1| uvrD/Rep helicase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|190563636|gb|EDV17601.1| uvrD/Rep helicase family protein [Bacillus anthracis
           Tsiankovskii-I]
          Length = 689

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMDEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|39939013|ref|NP_950779.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722122|dbj|BAD04612.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 1038

 Score = 75.3 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 30/154 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIIN---TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           L   Y E      ++ F+ L+I      + +++ +   + R         + IDE QD +
Sbjct: 185 LLNLYYEKLNYYNLITFDGLLIEISDFIEFVERNNGLIYNRP--------VFIDEFQDLN 236

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              + +I+ L           + P +L+  GD  Q+IYSF G+  + +    +       
Sbjct: 237 YFYYFIIKELL---------FNKPNSLYCFGDYTQNIYSFFGSSERILELFVKDF----- 282

Query: 250 NAGQKFSIIELPLSFRSTA-DILTVVDKVFSIPE 282
               K     L +++RS   +I+   +++    E
Sbjct: 283 ----KPEKHFLNVNYRSKGINIVKAANELIDNKE 312


>gi|229080001|ref|ZP_04212532.1| UvrD/Rep helicase [Bacillus cereus Rock4-2]
 gi|228703380|gb|EEL55835.1| UvrD/Rep helicase [Bacillus cereus Rock4-2]
          Length = 691

 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 108/343 (31%), Gaps = 58/343 (16%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           + W      V DI K++ +  E  +  + K+ + L    +           L  F  T +
Sbjct: 329 EAWDRAIIPVEDIKKWMQV--EYKHYPLQKRRERLVGRMK-----RWIEIELKKFGETNE 381

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K   T+ +N               +   +    +  K  +         + L    
Sbjct: 382 KKLLKKEATKRLNAYMK--------FWPKMSALSLYSSIVKSKEILEVLP---EELVKET 430

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLIQ 192
           E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  Q
Sbjct: 431 EKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQ 478

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             V++ +T              +   +GD  Q+IY + G   +     K + Q+      
Sbjct: 479 VYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY--- 522

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 EL  S+RST +I+   +++    E   GL+     +         +    ++ +
Sbjct: 523 -----YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGEDVKVIHAENQFTEIVK 577

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            V    ++          +  D           A      I  
Sbjct: 578 TVKHLQNADVKTIAVIGRTE-DECRDIYVELTNAGLTVNVIEA 619


>gi|163785183|ref|ZP_02179869.1| Superfamily I DNA and RNA helicase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879550|gb|EDP73368.1| Superfamily I DNA and RNA helicase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 226

 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           + +   Y+E       +DF+DL++N   L K+ +    IR K     ++IL+DE QDT+ 
Sbjct: 167 RTIYEKYQEGLIFANAMDFDDLLLNVVKLFKENEE---IRQKWQDMFDYILVDEYQDTNK 223

Query: 191 IQW 193
           IQ 
Sbjct: 224 IQH 226


>gi|254931620|ref|ZP_05264979.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262]
 gi|293583173|gb|EFF95205.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262]
          Length = 1157

 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 78/748 (10%), Positives = 202/748 (27%), Gaps = 169/748 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       +A  I  +               + +D+ +L R   D  ++        
Sbjct: 307  QANNRRAEIEGVAREIRQLTLNG----------YRYQDMAILTRNLGDYDVLCETVME-- 354

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I +  + +  ++ H  I+ + +    IL + + +  F  +     F  +E      
Sbjct: 355  -SYNIPIFIDKKRAMSKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLR 413

Query: 453  --------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIK---YIHELIHIA 495
                          I        E + +Y  I+  +   + +    I+    I+E+  + 
Sbjct: 414  RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEEIQTQSIINEMRSLI 473

Query: 496  -------------------QFCSPHDFFTLI------------LGAKKGRQQFISRFGNE 524
                                  + + F   +               +   +  ++R   +
Sbjct: 474  VNPLSTLELNLKKAKTGMEFALALYHFLEQVNAVERLESWRQRAEEQGYLE--LAREHEQ 531

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGL 583
                +   L+  +         L   +  +              + ++V +  +  AK L
Sbjct: 532  AWSAISALLDEFVEVLGEETLDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLL 591

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            +  V+F +     V   +      +     D     +   +  ++NNI            
Sbjct: 592  DMKVIFAIGMNDGVMPLRQKDNGILSDQDRDALRAEVSNLKPSAKNNIG----------- 640

Query: 644  QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
              E + L Y  ++  SD+L +   +     K  ++  +   +   F        +     
Sbjct: 641  --EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFKKLSESVYLTDPGL 698

Query: 704  INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY-------- 755
            ++  E  +Y  S          + +  K+      +    ++    +  E          
Sbjct: 699  LSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPLSSVWWDAYNSYFENGKESRMAKQVLSS 758

Query: 756  -----------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFN 781
                                     + S ++                  E      Q  +
Sbjct: 759  LYYENKTKPLQEKTAKNLFGETIHASVSRMEKFFSCEFQHFAQYGLKLEERGHFQLQAVD 818

Query: 782  RGLIIHKLLQVIFT------------LPEHKRKNFIT--SYCT---KNAKLWPAKEYKNL 824
             G I H  ++ I                +  R+      ++     ++  L  +K  + +
Sbjct: 819  MGEIFHGAMEWISAELKRNNLDWGSLTDQECRQMAKLTMTFLAPKIQHEILLSSKRMEYI 878

Query: 825  LLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
               + +++     ++       ++  V +                     ++++ GRID+
Sbjct: 879  QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKISLQANSELLLQGRIDR 938

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL 923
            I  +  +    + I +YK+  H    +  + Y    Q+  Y  I+         K+    
Sbjct: 939  IDMAEQEDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPA 997

Query: 924  --LIYVSEPKVF----IIPQNKLNKAFA 945
              L +    +       +    + K   
Sbjct: 998  GVLYFHMHNQYVQAEKELSDEAIAKELQ 1025


>gi|228953145|ref|ZP_04115204.1| UvrD/Rep helicase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228806560|gb|EEM53120.1| UvrD/Rep helicase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 691

 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 108/343 (31%), Gaps = 58/343 (16%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           + W      V DI K++ +  E  +  + K+ + L    +           L  F  T +
Sbjct: 329 EAWDRAIIPVEDIKKWMQV--EYKHYPLQKRRERLVGRMK-----RWIEIELKKFGETNE 381

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K   T+ +N               +   +    +  K  +         + L    
Sbjct: 382 KKLLKKEATKRLNAYMK--------FWPKMSALSLYSSIVKSKEILEVLP---EELVKET 430

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLIQ 192
           E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  Q
Sbjct: 431 EKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQ 478

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             V++ +T              +   +GD  Q+IY + G   +     K + Q+      
Sbjct: 479 VYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY--- 522

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 EL  S+RST +I+   +++    E   GL+     +         +    ++ +
Sbjct: 523 -----YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGEDVKVIHAENQFTEIVK 577

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            V    ++          +  D           A      I  
Sbjct: 578 TVKHLQNADVKTIAVIGRTE-DECRDIYVELTNAGLTVNVIEA 619


>gi|229070290|ref|ZP_04203540.1| UvrD/Rep helicase [Bacillus cereus F65185]
 gi|228712854|gb|EEL64779.1| UvrD/Rep helicase [Bacillus cereus F65185]
          Length = 691

 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 108/343 (31%), Gaps = 58/343 (16%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           + W      V DI K++ +  E  +  + K+ + L    +           L  F  T +
Sbjct: 329 EAWDRAIIPVEDIKKWMQV--EYKHYPLQKRRERLVGRMK-----RWIEIELKKFGETNE 381

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K   T+ +N               +   +    +  K  +         + L    
Sbjct: 382 KKLLKKEATKRLNAYMK--------FWPKMSALSLYSSIVKSKEILEVLP---EELVKET 430

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLIQ 192
           E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  Q
Sbjct: 431 EKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQ 478

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             V++ +T              +   +GD  Q+IY + G   +     K + Q+      
Sbjct: 479 VYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY--- 522

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 EL  S+RST +I+   +++    E   GL+     +         +    ++ +
Sbjct: 523 -----YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGEDVKVIHAENQFTEIVK 577

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
            V    ++          +  D           A      I  
Sbjct: 578 TVKHLQNADVKTIAVIGRTE-DECRDIYVELTNAGLTVNVIEA 619


>gi|163815443|ref|ZP_02206816.1| hypothetical protein COPEUT_01606 [Coprococcus eutactus ATCC 27759]
 gi|158449080|gb|EDP26075.1| hypothetical protein COPEUT_01606 [Coprococcus eutactus ATCC 27759]
          Length = 1258

 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 76/689 (11%), Positives = 176/689 (25%), Gaps = 134/689 (19%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
           + +  +    L +   A   A  +A  I  ++           +  + KDI V+     D
Sbjct: 314 KINGAADSIKLVRTDRARDEALYVASQIRKLVRE---------KGYRYKDIAVVA---GD 361

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              +    R   ++Y+I V  ++   L        + A    +       S   +LKS +
Sbjct: 362 LHDVAGYYRQAMDEYRIPVFIDENTALRGDPCSDTVRAFLAVMSDNFSFNSVFRLLKSGM 421

Query: 446 FNFSEDDIFKICTQ------RHETETVYEYIQKFANCGISKFQHVIKYI----------- 488
              +  D+ ++         R     + E   K  +    +   + + I           
Sbjct: 422 TEVAYMDVERMENYALKRNLRGYKSWLKEITDKNNSDYAQEMDSIRRQIVSIFGEDCIDV 481

Query: 489 ----------------HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN--EVIDVLD 530
                            EL +        +            ++         ++ D + 
Sbjct: 482 YKPSSPNSKDTVTNYTKELYNFLDELHVCEKLEERRKRL-YEEKLFDEGDAYGQIFDKIV 540

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
              +  +    +   +++E    LE               + V +  +  ++      +F
Sbjct: 541 ALFDKVVTILGDEKMTVKEYAGVLEAGISDMEIGIVPPTIDRVVVGDMTRSRLNHVKALF 600

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
                  +      K   +      +            + N   +               
Sbjct: 601 FTGVNEGIIPKPAKKGKILSNGDRQNLEKCGVTLAPSDKTNAYIEQFYI----------- 649

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK------IKLTNS 703
             Y  +T+ SD L I       +          D + + F + E           +  N 
Sbjct: 650 --YTSLTKPSDNLYIVFRKMGEDMNAVGPSYLVDRIRNIFPDIEIEDYDLDSQIPETVNG 707

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP---- 759
             +     Y+          ++R    +    E            + +NE   L+P    
Sbjct: 708 ALRYLVSRYDEVGSDGTLQAVKRLIEQQGGNTEYATWLGAMQSGYDYVNETKTLSPETVR 767

Query: 760 -----------STIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVIFTL- 796
                      S ++   +   +  L                 N G+I+H  +Q +F   
Sbjct: 768 LLYGTELTESVSKLEKYAECQFKYFLQYGLGLMDRETYQLNAANVGIILHSSMQKMFEYI 827

Query: 797 --------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-----ITRLLEN------PMM 837
                    +                    +  +    S     + + LE+        +
Sbjct: 828 KTKCGNNWADITETELADRAVEFVDASADDEAAEYFEDSSRAAYVKKFLEDIAVRTAKTL 887

Query: 838 TTAMSCDSYSEVSVSGKIN-----CPKKDII----------ISGRIDQI--SISQQNIF- 879
            T + C      +     +        ++ I          + G ID++   +S  +++ 
Sbjct: 888 RTFVLCGDMHPENFERYFDTSKLGDGIENYIFKLPNGMTMSLKGVIDRVDEYVSDGDVYF 947

Query: 880 -IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            I +YK+      + + +      QL  Y
Sbjct: 948 KIIDYKSS-DQKIDKDRVLAGLQMQLVTY 975


>gi|227549279|ref|ZP_03979328.1| RecB family exonuclease [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078598|gb|EEI16561.1| RecB family exonuclease [Corynebacterium lipophiloflavum DSM 44291]
          Length = 263

 Score = 75.0 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 72/226 (31%), Gaps = 32/226 (14%)

Query: 752 NEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR-- 801
           + P  L+PS      +  L               +   +G ++H +L+ + +    +R  
Sbjct: 3   SRPLALSPSRASDYKQCPLLYRFRAIDRLPEPKTEAQVKGTLVHAVLEEMHSWRREERTY 62

Query: 802 KNFITSYCTKNAKLWP-AKEYKNLLLSITRLLENPM--MTTAMS-------CDSYSEVSV 851
              + +      +L     E    +    +LL +    +              +  E+ V
Sbjct: 63  PAAVKAIVPAWERLIEQDPEVAEPISDRQQLLVDARTLIRGYFHMENPLGFDSTEQEMYV 122

Query: 852 SGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
            G +      + + G ID++ ++    + + +YKT                 Q+  Y  +
Sbjct: 123 DGVLP---NGVPVRGFIDRVDVAPTGEVRVVDYKTGKKPLPRYSADA---QFQMRFYALV 176

Query: 911 LKDSYPNKSLVCLLIYVS--EPKVFIIPQNKL---NKAFAEISTKI 951
               +        L+Y+   +  +    + +L    +   E+  KI
Sbjct: 177 YWRFFGAIPTQLRLMYLKVVDSMILTPSREELEYFERDLGELWAKI 222


>gi|298530046|ref|ZP_07017448.1| putative DNA repair protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509420|gb|EFI33324.1| putative DNA repair protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 904

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/365 (10%), Positives = 102/365 (27%), Gaps = 57/365 (15%)

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
            + +    L +               VRIM +  A+      ++++    Q +       
Sbjct: 449 GMSQATQTLSRILNETIFQPEPPEVRVRIMGMLEAESESFDELWIMGLTDQAWPQSPEPS 508

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             +  SL     +P   P                 +   +   R+++  + + + + I+ 
Sbjct: 509 PFLPVSLQKHLDMPRSSP-----------------QHELDYARRIMH-RLLQNTSRAILS 550

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                 + +        ++    F+    +        ++  E + Y  +   P  +   
Sbjct: 551 YPCREEDLELLPSPLLREISGLEFNEPGLLPDPDPWAGLSPGEQLKYFQNEQAPPLSQAS 610

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           R      ++  Q +                             +LE  +       RG+I
Sbjct: 611 RAPGGTGVLRSQALCPFQAFARHR---------------MHARSLEEPVVGLGPPERGII 655

Query: 786 IHKLLQV----------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
           +H  L+           +  L   +R   I     +  +   ++  + +       LE  
Sbjct: 656 MHAALEYFWQSCRDQAALLNLTGDRRLQMIDQAVDQAIREMHSQRPQTMTSRFQE-LERE 714

Query: 836 MMTTAMSCDSYSE---VSVSGKINCPKKDIIISG--------RIDQISISQQNIFIFEYK 884
            +   +      E        +    + +I I+G        R+D++      + + +YK
Sbjct: 715 RLQDLLQEWLALEEQRQPFQVQELEKRSNISINGLELNVVADRMDRL--EDGRLVVIDYK 772

Query: 885 THHHV 889
           +  H 
Sbjct: 773 SGRHA 777


>gi|240139359|ref|YP_002963834.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
 gi|240009331|gb|ACS40557.1| UvrD/REP helicase [Methylobacterium extorquens AM1]
          Length = 615

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 129/524 (24%), Gaps = 125/524 (23%)

Query: 152 LIINTND-LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           +I    + +L+       IR  +      + +DE QDT+  Q+ ++              
Sbjct: 194 MINRLVEYVLRTNP---RIREALRATYPFVFLDEFQDTTSAQFGLV---------TTAFD 241

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  VGD KQ I  F GA P      +R+              + L  ++RS  ++
Sbjct: 242 PIGTRVTTVGDVKQRIMGFAGAMPDGFATFRRLF---------DAREVTLLFNWRSHEEL 292

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           + V   V S  + A       T  +R R ++        +W                   
Sbjct: 293 VAVQRVVASQIDPA-------TEPVRARRAKSVDGAHCAIWSF----------------- 328

Query: 331 SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                  + +    +A  +A  ++                ++ + + +LVR       + 
Sbjct: 329 -----PDRTAEIDAIAGWVASELAE-------------GRLEPQRLAILVR--FYANQVE 368

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R     + I +    R +                I     +   + +L       S 
Sbjct: 369 GELRPAFEAHGIRLRNVARSVGG------------VAIQDLLTEELTILLLPLLRLGTSR 416

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            +             V               + V      L  +     P       L A
Sbjct: 417 HEPGAWTAALRTVGLVRAIRDDDERRLGHVMRDVEALAVALRRLMTDTPPDPALARDLVA 476

Query: 511 KKGRQQFISRFGNEVIDVLDE--FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                   +           E  FL             L +  S  +             
Sbjct: 477 MMLEGVGEASVRQATAAYHRETDFLRIRSGFTALLGECLAQASSWSDAL------DRFEG 530

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
             +V +MT+H +KG+E   +       + +   H                          
Sbjct: 531 KGQVPLMTIHKSKGMEFHTMIFFGLDDRSWKGLHRG------------------------ 566

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                          + E     +V +TRA  +      +    
Sbjct: 567 ---------------EAEELNSFFVALTRAEQRAFFTCCTQRGG 595


>gi|213400875|gb|ACJ47086.1| hypothetical protein [Wolbachia endosymbiont of Onchocerca
           volvulus]
          Length = 157

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 9/152 (5%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++    +  +  + +   +L  SFRS  +IL  VD++F+     +       
Sbjct: 1   NPHLFNYMQQYFHAKTGD--RDWISCQLKKSFRSAPEILVFVDRIFNN---FREEVSFIN 55

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
           + I+H   R    G +++W  +    + +    Q   T   D +    S  +LA+ IAY 
Sbjct: 56  SEIKHIPHRKNDQGYIEIWPLLPRCKEEEQQALQIHLTDKKDHV---ISDRLLAQTIAYK 112

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           I N +    I    K R I+ +DI++LVR+R 
Sbjct: 113 IHNWLSRRRIL-VAKDRHIEPRDIMILVRQRN 143


>gi|218233726|ref|YP_002367531.1| UvrD/Rep helicase family protein [Bacillus cereus B4264]
 gi|218161683|gb|ACK61675.1| UvrD/Rep helicase family protein [Bacillus cereus B4264]
          Length = 691

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 21/163 (12%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWNAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             +         +    ++ + V    ++          +  +
Sbjct: 557 FRSGEDVKVIHAENQFTEIVKTVKHLQNADVKTIAVIGRTEDE 599


>gi|307628251|gb|ADN72555.1| pathogenesis-related protein [Escherichia coli UM146]
          Length = 612

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 79/596 (13%), Positives = 172/596 (28%), Gaps = 136/596 (22%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD---F-----ED 151
           ++    E   +RD     +  + + ASL   + + +   + K+   + D   F      D
Sbjct: 110 MENIAAEIADLRD--KQSRTTRVSQASLERERKIVS---KEKRLQNLSDVYKFTYNPTGD 164

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEI--------NH--ILIDEVQDTSLIQWEVIRSLTE 201
               T D L   +V     Y +D++          H  +LIDE QDT+       + L  
Sbjct: 165 --NRTKDSLNHSEVIKLGSYFLDRKYTMQKILVNRHPILLIDESQDTN-------KLLMN 215

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                +  +    ++  +GD  Q IYS   ++ +  L           +  +    I   
Sbjct: 216 ALLEVEKNNRDTFSVGLLGDMMQRIYSDGKSDLEACLD---------EHWKKPEKSI--- 263

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            ++RS   ++ +++ + S  +N            + ++    + G V++   +   H   
Sbjct: 264 -NYRSPKRVVALINLIRSQVDNH-----------KQKAREDAEEGYVRI--FIKECHSDN 309

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
            +  +         +  +         +   I               R+        L +
Sbjct: 310 KDRDESFVKKRMREITLDDDWENHDSLVNTLILE-------HHMAATRMGFIDMFTPLYQ 362

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                         LK        G     L +   I  +++       + D  +   +L
Sbjct: 363 -----------IERLKT-------GLLEGSLGNINFICGIVSPLISACIKNDTFTITNIL 404

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           ++       + + K                      +++ ++ +  +   I         
Sbjct: 405 RTNAPLLKREHLLKNTNN---------------TSPLTQIRNSLDMLKSFISTNPELITI 449

Query: 502 DFFTLI-----LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
           +    I     L      Q+ +    N   D+++         ++   S L +       
Sbjct: 450 NLLHKINEIKLLDVPDSIQEILESNDNSQDDIIEA-------WQKAFSSPLCQFDKYYNY 502

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                         +  I T    KGLE P V +               +          
Sbjct: 503 V-----------KGKTNIDTHQGVKGLEFPRVLV---------------LIDDSEAKGFM 536

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                +   K +     D  K  K ++++   RL YV  +RA   L I  +++ + 
Sbjct: 537 FSYDKLFGVKEKTKTDLDNEKEGKDTSEDRTRRLFYVTCSRAQKSLAILAYTDNTE 592


>gi|229139447|ref|ZP_04268018.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST26]
 gi|228643994|gb|EEL00255.1| UvrD/Rep helicase [Bacillus cereus BDRD-ST26]
          Length = 325

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 94  EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 142

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 143 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 189


>gi|260061424|ref|YP_003194504.1| hypothetical protein RB2501_07485 [Robiginitalea biformata
           HTCC2501]
 gi|88785556|gb|EAR16725.1| hypothetical protein RB2501_07485 [Robiginitalea biformata
           HTCC2501]
          Length = 911

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 59/512 (11%), Positives = 133/512 (25%), Gaps = 73/512 (14%)

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
             +        +  L   I            L+S   +   +          E     + 
Sbjct: 348 MRIRKTAEGWRVPQLLVLIAHPY--------LQSWFRSLDFEPTRGRMYLIRENLYYADS 399

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
               A       + ++             +  D    +   K   Q+       E +   
Sbjct: 400 DALEAMGLPVTVRELLLPPPGAPPSDHAKNLEDITRAL---KPVYQKAGDPLQLEYLFHF 456

Query: 530 DEFLNFTLRNEQ-----NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
           ++  N  ++        +   SLQ L  +L               + +++M +  ++ L+
Sbjct: 457 NQLFNQLIQLTGAYPFVSDLKSLQLLYRQL--LADEKVDFEGQPLSGLQVMGMLESRNLD 514

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V +      +          I   +  + G+P +                       
Sbjct: 515 FDTVIITSVNEGILPSGKSNASFIPFDVKREFGMPTYK-------------------EKD 555

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             Y    Y  + RA  +++IC ++     +      + + +        + +        
Sbjct: 556 AVYTYHFYRLLQRAR-RVVICYNTEPEVIEGGEPSRFINQLRTDPVLGPQTELAFAVPET 614

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
             +                L+   +              FSP          L     + 
Sbjct: 615 GAERPGELRIHKGPELLERLQEMASSG------------FSPTSLSRFIADPLLFYQRNV 662

Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQVI-----------FTLPE--HKRKNFITSYCTK 811
            G    E L         G ++H  L+ +             L E  ++  + I     K
Sbjct: 663 LGLDETEELEETVAANTFGTVLHDALEELYRPLEGAFLNRDNLAELRNRSDSAIERAFRK 722

Query: 812 NAKLWPAKEYKNLLLS--ITRLLENPMMTTAMSCDSYS------EVSVSGKINCPK--KD 861
           N         KNL+    + + L++ + +     + +       E     ++  P     
Sbjct: 723 NYLRDGKARGKNLIALQVLRQHLDHFLGSEVTRAEKHRIRILGVEKKFRQELAVPGLQHP 782

Query: 862 IIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
           + + G +D+I      + I +YKT    P E+
Sbjct: 783 VTLKGTVDRIEEVDGQVRIVDYKTGKVTPAEL 814


>gi|304392406|ref|ZP_07374347.1| double-strand break repair protein AddB [Ahrensia sp. R2A130]
 gi|303295510|gb|EFL89869.1| double-strand break repair protein AddB [Ahrensia sp. R2A130]
          Length = 1070

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 72/672 (10%), Positives = 160/672 (23%), Gaps = 83/672 (12%)

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTV-QLWEQVVSQHDSQCNPQQESWTSYFDSL 336
                 +            H  S   +       W+   +++D     +  +  S  ++ 
Sbjct: 324 IEHITLSAEPDSGPLRVREHIVSEALRPSATTDKWQDFATKYDDAQKAEALAGVSIVEAR 383

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +   A  +A  +  TI          +        A+ + V +R R D  +     + L
Sbjct: 384 GERQEALAIALALRETIET---EGATAALVTPDRNLARRVAVEMR-RFDIVVDDSAGQPL 439

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
           +N          R  L       D +AL   +   +  L              E  I + 
Sbjct: 440 RNR---PAGTFARLALATAFGPIDPVALTGLLKHPDLRLGLPRAKARHGARLLELAILRG 496

Query: 457 CTQRHETETVYEYIQKFANC-----GISKFQHVIKYIHELIHIAQFC------SPHDFFT 505
                E     +  Q             K       I  +                +   
Sbjct: 497 AIMPPERGFFEDAAQTLRRTLLQVIADEKTPRAHSTIVRMSDDEWLLLIDFCQRLDEAVL 556

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFL-----NFTLRNEQNSYSSLQELISELEQYPPT 560
           LI       +Q + R+G      ++                   ++L   +++L      
Sbjct: 557 LIEDDVLNTKQPLDRWGQCTTAFIEALAIDEHGELAPFYNTTDGAALHGFLAQLLDSGEE 616

Query: 561 IKRAHSANHN-------------------EVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           +        +                    + I+    A+      V L       +   
Sbjct: 617 LDTTADHWPDVFDALMGQRTVRAQGGTDPRIAILGPLEARLQTFDRVVLGGLNEGTWPAA 676

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                 +   +    G+P    ++    +    ++                V +TRA   
Sbjct: 677 ARNDPFLSRPMKAQLGLPSPERRTGLAAHDFQMMMGMAD------------VVLTRA--- 721

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
                 ++ +    S       +V  S       ++ +             E        
Sbjct: 722 ----ARADNAPTVASRWVQRLMLVAGSHATTAMQERGRKFTDWVTAIDAPKETEKPAQRP 777

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
            P    +     +    +   +  P          L P          L+ L+ D     
Sbjct: 778 APKPPVDVRPNRLSVTAVATWIEDPYAIYAKHILGLQP----------LQPLIRDADARE 827

Query: 782 RGLIIHKLLQVIFTLPE-HKRKNFITSYCTKNAKLWPAKEYKN--LLLSITRL--LENPM 836
           RG + H++ +         +  + +         ++   E     +   + R   +    
Sbjct: 828 RGELYHQVFEEFVRSGINPEADHAMDQLLLSAKAVFGEAEIPQEFIAQWLPRFTEIAEEF 887

Query: 837 MTTA---MSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQE 892
           ++     ++      V  SG+         ++ R D++         I++YKT       
Sbjct: 888 LSWHARQIAGGHKVTVERSGRTEKGLNGFTLTARADRMDRDVDGRFIIYDYKTGASP--T 945

Query: 893 IEHIPYTHIAQL 904
                     QL
Sbjct: 946 AARARDMKAPQL 957


>gi|312196830|ref|YP_004016891.1| UvrD/REP helicase [Frankia sp. EuI1c]
 gi|311228166|gb|ADP81021.1| UvrD/REP helicase [Frankia sp. EuI1c]
          Length = 734

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/345 (12%), Positives = 97/345 (28%), Gaps = 38/345 (11%)

Query: 27  QVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK-NII 85
            ++ +    ++       T+ + A  + ++                   +    +     
Sbjct: 320 NLALLEAEAAIRDRVAVRTVDQVANQIWRSVHGAPPPLIQGDDERDLWKELIDERGLAFG 379

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
            + +  +   +   L    ++    +      +    T A  +        +E   ++  
Sbjct: 380 DRFVADEWRQVI--LGNGINDLAGYQAASRAGRGKPLTAAQRSRVWAAVEAFEARLREQG 437

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIR-----YKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           VL    +      LL +  V+  +          +   H+++DE QD S  QW ++R+  
Sbjct: 438 VLTHALVCAEATRLLDQGAVAPNLFGHHPDAAGRRPFRHVVVDEAQDLSPAQWRLLRA-- 495

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                      +   LF  GD  Q IY    +              R            L
Sbjct: 496 -------AVAPAENDLFLAGDAHQRIYGHRASL-------------RDHGIVVTGRASRL 535

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS-SRIGQVGTVQLWEQVVSQHD 319
            +++R+TA+IL       S+        +D    +   +  R    G   +     +  D
Sbjct: 536 TVNYRTTAEILAW-----SLGMLRDERIDDLDGGLDSIAGYRSELHGRRPVLAGAPTPSD 590

Query: 320 SQCN--PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                      W        +   A+     +  T++ ++     
Sbjct: 591 EAKGLIDVVRGWIDAGVEPAEIGVAARTNAVVDETLTALLDAGLP 635


>gi|160938157|ref|ZP_02085513.1| hypothetical protein CLOBOL_03051 [Clostridium bolteae ATCC BAA-613]
 gi|158438961|gb|EDP16717.1| hypothetical protein CLOBOL_03051 [Clostridium bolteae ATCC BAA-613]
          Length = 1196

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 59/602 (9%), Positives = 160/602 (26%), Gaps = 97/602 (16%)

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
            G +            L    R +  +     +    +       + ++ ++   R     
Sbjct: 449  GFNGSREHAEQMTDRLENYVRALGIRGWKR-WDSCWERQYRGGEKLNLKELNQYRMWILE 507

Query: 466  VYEYIQKFANCGISKFQHVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNE 524
                +++      +    V   + + +   +      ++    L  K+   + ++R   +
Sbjct: 508  PLRPLREAFKAEGATIASVTAALRQFLEHMELREKLEEYRDFFLERKEPGDENLAREYGQ 567

Query: 525  VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGL 583
            V D + E             + ++  I  L+     I+        ++V +  +  ++  
Sbjct: 568  VYDRVLELFERLEGLLGAEKADMKNYIQILDAGFQEIQVGVIPATVDQVMVGDITRSRLE 627

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP-IWIPQSKSRNNIVSDLIKHLKKS 642
               V+F V         +      +            I +  +   +  +          
Sbjct: 628  AVKVLFFVGVNEGTVPQRKNGGSLLSDRDRAALRKMDIELAPTVKEDGCIQKFY------ 681

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                    LY+ M++ S QL++     T + K          V   F   + + +  +  
Sbjct: 682  --------LYLMMSKPSRQLVLTYAGLTPDGKSQRPSNLMGEVGKLFPGMKTLDEHSVEW 733

Query: 703  SINKDEWIAYE-----WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
             +                         ERE+     + +     +        + +    
Sbjct: 734  PVRTGRDARELLIQGLRGMQEQGEDDREREDAAFMQLFQHFYTSQEHRDKVRQLVDAAFY 793

Query: 758  NPSTIDTKGKTNL---------------------------------ESLLSDNQTFNRGL 784
            +                                             E    + +  + G 
Sbjct: 794  SYEERGIGRAAARALYGRELQGSVTRLEQFASCAYAHFLRYGLELMERQEYELEAVDMGN 853

Query: 785  IIH----KLL-------QVIFTLPEHKRKNFITSYCTKNAKLW------PAKEYKNLLLS 827
            + H    +         Q    L E  RK+ +    T+  + +       +     L   
Sbjct: 854  LFHQSIDRCFASMKDRGQDWRELTEEGRKSLVKECVTQVTEEYGNTIMSSSARNAYLAGR 913

Query: 828  ITRLLENP--MMTTAMSCDSYSEVSVSGKINC------------PKKDIIISGRIDQ--I 871
            + R+ +     +   +    +  V      +               +++ + GRID+  +
Sbjct: 914  VERITDRTIWALAEQVKKGDFEPVGFEVSFSAIDNLKAMRIGLSEDEELQLRGRIDRMDL 973

Query: 872  SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLV-CLL 924
               + +++  I +YK+      ++  + Y    QL +Y        +  +P+K +V   +
Sbjct: 974  CRDEDHVYVKIIDYKSGTTSF-DLAALFYGLQLQLVVYMDAAVEMEERRHPDKEVVPAGI 1032

Query: 925  IY 926
             Y
Sbjct: 1033 FY 1034


>gi|229496673|ref|ZP_04390387.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316570|gb|EEN82489.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 1020

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 95/395 (24%), Gaps = 66/395 (16%)

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                           ++IM    ++ +    + + ++      HK       +P     
Sbjct: 549 LVEEETLPFEGEPLEGLQIMGFLESRLINFDYLIIPESNEGALPHKRPINRGYIPYNVRL 608

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                               Y  ++RA     I    + S ++ 
Sbjct: 609 GYNMPTYQSDDYTEAYY------------------FYRLISRARRVFFI--VDSRSEKEP 648

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
           S        ++     +  VK   L     K      E +            + IK+ + 
Sbjct: 649 SRFLAQLRYLFHLTPQEHTVKVSMLATQTPKIVIPKDEAAMTVLREYTTSNRDDIKKALS 708

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-- 793
              +      P++                     +E         + G +IH ++Q +  
Sbjct: 709 ASSLSTYALCPLQFYYKYIR----------QIPEIEERTDLLSPGDFGTVIHDVMQHLYE 758

Query: 794 -----------------FTLPEHKRKNFITSYCTKNAKLW--PAKEYKNLLLSITRLLEN 834
                                  +    + SY  +N        KE + +     R++  
Sbjct: 759 PYEGKLLSSQDYEWLIDPHTSLPRISTIVNSYYAQNVLHQNSTPKEIEGMHQMYIRMIME 818

Query: 835 PMMTTA-MSCD----------SYSEVSVSG--KINCPKKDIIISGRIDQISISQQNIFIF 881
            +                     SE  +     +     D+   G ID++      + I 
Sbjct: 819 EVYAVLKFDAQYIRRGHQLAYVASEQRIDMIEPLPELGIDVRFKGFIDRLDEVDGLLRIV 878

Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSI-YEKILKDSY 915
           +YKT     Q  +     + AQ    + K +   +
Sbjct: 879 DYKTG-SDSQTFKDWNQLYFAQEKSQHRKAIAQIF 912


>gi|205373502|ref|ZP_03226305.1| UvrD/REP helicase [Bacillus coahuilensis m4-4]
          Length = 273

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 89/270 (32%), Gaps = 32/270 (11%)

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
                 IK  +   R  L  ++  +   +L +   N  E     I   +      Y    
Sbjct: 21  FYQQSTIKIALDYLRLSLYPKNLEALRNILPTLYVN-REKAFSYISDSQRRNPIDYPLEH 79

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR--------FGN 523
                GI +FQ     + E I +    S +     I   ++   +++             
Sbjct: 80  LLNWEGIREFQRF--KLKERISLINSLSIYSPLNGIKKIREFYDRYLEADEVKVSTIHQE 137

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            + ++L E  +   R    + + L   +  L +   T+ +    N   V+++T+H +KGL
Sbjct: 138 TLKEMLAELESSAKRF--GTVAELLSFVDHLIEKHQTLIKN--QNGEGVQLLTIHKSKGL 193

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   VFL+    ++  H     ++    L  +                        +   
Sbjct: 194 EFKTVFLIGASEKILPHSSALDINNRTDLVIE-----------------KKKELKQQLLA 236

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            EE  RL YV +TRA D+L I        E
Sbjct: 237 IEEERRLAYVAVTRAIDELYISSPKVYRGE 266


>gi|90415965|ref|ZP_01223898.1| hypothetical protein GB2207_01992 [marine gamma proteobacterium
           HTCC2207]
 gi|90332339|gb|EAS47536.1| hypothetical protein GB2207_01992 [marine gamma proteobacterium
           HTCC2207]
          Length = 923

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 54/446 (12%), Positives = 111/446 (24%), Gaps = 59/446 (13%)

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGR-QQFISRFGNEVIDVLDEFLNFTLRNEQNSYS-S 546
            ++     F +  +FF   L       ++  +    +     +  L      +       
Sbjct: 399 RQINSQQSFAAWGEFFVGYLTDLGWPGKRTANSIEYQQRQHWNRLLEQFTGLDNLGIEVG 458

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L      L+Q               ++I+ +    GL    +++VD  SQ F        
Sbjct: 459 LSTAFKHLQQLAQDSVFHPQTADAPLQILGLLEGSGLRFDQLWIVDMHSQNFPASVAINQ 518

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            +         +P  +P                    + E    L       S +LI+  
Sbjct: 519 LLPAEFQRLHQMPHSLP------------------ERELEIANQLLQSYKNNSGRLIVSH 560

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                 E+        D+   S       K            +  Y+      +  P   
Sbjct: 561 PKIRGEEQLDPSPLISDIPLGSHKVLNSHKLFDSPQPHPPWLYQDYQCQLLADQAPPYSP 620

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
                +                         N           LE         +RG ++
Sbjct: 621 RLETIRGGSN-----------LLKNQSICPFNAFVTHRLKAEPLEEPSQGLSALDRGSLL 669

Query: 787 HKLLQVI------------------FTLPEHKRKNFITSYCTKN----AKLWPAKEYKNL 824
           H++L  +                          +  +T +  ++       +   E + L
Sbjct: 670 HEILFRLWGIWKTSATLQALSDQQLQQQLATTIEQTLTEWAPRHPILRGDRFRGLEQQRL 729

Query: 825 LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK 884
              +T+ LE   +           V +  K +    D+ I+ R+D++      + I +YK
Sbjct: 730 EKLLTQWLEEEKLRPPFEV-----VELESKNSVRFGDLEINLRLDRVDQIGDKLLIIDYK 784

Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKI 910
           +                 QL +Y   
Sbjct: 785 SGAVKESSWSGTRPV-DPQLPLYVLA 809


>gi|229103417|ref|ZP_04234099.1| UvrD/Rep helicase [Bacillus cereus Rock3-28]
 gi|228679913|gb|EEL34108.1| UvrD/Rep helicase [Bacillus cereus Rock3-28]
          Length = 691

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWNAFKEVFQETGY--------FELTRSYRSTKEIIEFANEIIKNAEIPVGLATPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +     ++            D           A     
Sbjct: 557 FRSGEDVKVIHAEDQFTEVLKTIKHLQ-NEGVKTIAVIGRTDDECRGMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|289581072|ref|YP_003479538.1| UvrD/REP helicase [Natrialba magadii ATCC 43099]
 gi|289530625|gb|ADD04976.1| UvrD/REP helicase [Natrialba magadii ATCC 43099]
          Length = 621

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 66/530 (12%), Positives = 138/530 (26%), Gaps = 152/530 (28%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           +   K +   + F D++                   +   +++++IDE QD + +Q++V 
Sbjct: 194 WRSYKGEQGKIGFADMLERVKQ------------RSLLPSVDYLVIDEFQDITTLQYDVY 241

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
                              +   GD+ Q +YS+ GA+P  +L              +   
Sbjct: 242 EEWKPHMEQ----------VLIAGDDDQVVYSWQGADPALLLD------------EEVDE 279

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I LP S+R  +++L  V++     E+ +                  + G V+       
Sbjct: 280 DIILPNSYRLPSNVLNAVNQEIRHIEHRKDKDLKPRK----------EGGAVEARRNASM 329

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                                           +   +   + +                I
Sbjct: 330 LD------------------------------VVRMVRRTLASGD------------GTI 347

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD-LMALGRFILSQEDDL 435
           ++L R R                  +         LTD     D L    R + + +   
Sbjct: 348 MILFRARYQMFQFIDEF----ITEGVPF-----TSLTDQRMWTDRLTQYVRAVEAID--- 395

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                            +          E+ +   ++                  +    
Sbjct: 396 ----------RGDDVTGLQARRLADMLQESAFGTNERD------------DLFDTIDERQ 433

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
           +     D   L++ A           G+E    +   +      ++ S  +   +     
Sbjct: 434 EEAGIDDLQELMIPASVIEDHVPFMPGSESAADM---VRKVTNFQKKSVRAYFAIGEY-- 488

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL-VDTGSQVFSHKHIKKMHIMPSLND 614
                       +   V   T+H+AKG E+  V +  D   +V                 
Sbjct: 489 -------TRMDTDRVRV--GTIHSAKGREADHVIVGTDLTEKVVEQMVATVDDPTNVPGV 539

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           +       P     +N                  R+ YVGM+RA ++L++
Sbjct: 540 EEFTKTTSPVPVLTDN----------------ERRVFYVGMSRARERLVM 573


>gi|325284301|ref|YP_004256841.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
 gi|324316365|gb|ADY27478.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
          Length = 546

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 20/193 (10%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +++  + +LIDE+QD S  Q +++RS+T +             +  VGD +QS+Y+F GA
Sbjct: 224 LNEPYDLLLIDELQDLSRGQLKLLRSVTHE----------GSRIIGVGDPRQSLYAFTGA 273

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +   +    ++                L +S+R    ++ V   +F + E A G  E S 
Sbjct: 274 DQAAMNLFAQLFG---------AQTYPLSISYRCPKRVIEVARSIFPVIEAAPGAREGSV 324

Query: 293 TTIRHRSS-RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +      R  Q G + +        +           +         +   +A+  A 
Sbjct: 325 ENVSGEEFLRCAQPGDLAIARTNAPLVEWCYQLIGAGVPALVRGKDVSRTLRAMAKDAAC 384

Query: 352 TISNMIGTDTIFS 364
            I   +       
Sbjct: 385 FIDGQVQRSEYRD 397


>gi|228939931|ref|ZP_04102508.1| UvrD/Rep helicase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228972823|ref|ZP_04133421.1| UvrD/Rep helicase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228979405|ref|ZP_04139740.1| UvrD/Rep helicase [Bacillus thuringiensis Bt407]
 gi|228780339|gb|EEM28571.1| UvrD/Rep helicase [Bacillus thuringiensis Bt407]
 gi|228786909|gb|EEM34890.1| UvrD/Rep helicase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228819862|gb|EEM65910.1| UvrD/Rep helicase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326940582|gb|AEA16478.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 691

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 21/163 (12%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K++ Q+            EL  S+RST +I+   +++        GL+   
Sbjct: 507 --IEDWNAFKQVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAGIPVGLATPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             +         +    ++ + V    ++          +  +
Sbjct: 557 FRSGEDVKVIRAENQFTEIVKTVKHLQNADVKTIAVIGRTEDE 599


>gi|152002521|dbj|BAF73545.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-W]
          Length = 1040

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 30/154 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           L   Y E      ++ F+ L+I T    + +++ +   + R         + IDE QD +
Sbjct: 185 LLNLYYEKLNYYNLITFDGLLIETSDFIEFVERNNGLIYNRP--------VFIDEFQDLN 236

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              + +I+ L           + P +L+  GD  Q+IYS  G+  + +    +       
Sbjct: 237 YFYYFIIKELL---------FNKPNSLYCFGDYTQNIYSSFGSSERILELFVKDF----- 282

Query: 250 NAGQKFSIIELPLSFRSTA-DILTVVDKVFSIPE 282
               K     L +++RS   +I+   +++    E
Sbjct: 283 ----KPEKHFLNVNYRSKGINIVKAANELIDNKE 312


>gi|305432275|ref|ZP_07401438.1| conserved hypothetical protein [Campylobacter coli JV20]
 gi|304444623|gb|EFM37273.1| conserved hypothetical protein [Campylobacter coli JV20]
          Length = 788

 Score = 75.0 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 76/593 (12%), Positives = 175/593 (29%), Gaps = 73/593 (12%)

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
            +    D L        +   +  +   ++  + + +      ++A ++  L        
Sbjct: 195 EYLLELDFLKDIHLELDMFYEVNLSQKKILKQEKLSNPNTLVKLKAFELRSLQCA-FVMD 253

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI--LSQEDDLSFVCMLKSPL 445
            I+   R   +  KI+V+  D     D L + D   +  F   +S ++ L +  +     
Sbjct: 254 EISNFVRAGIDPEKIAVITPD-ESFCDLLKLFDKNNMLNFASGVSIKESLFYQKIKALYN 312

Query: 446 FNFSEDDIFKICTQR-HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
              S+  I+KI      + + +++Y     +    +F+       ++  +  F +     
Sbjct: 313 GANSDAFIYKIDENYFEQEKMIFDYHNTLLHYLELQFEDFRTRFDQICDLQYFEN---LI 369

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              L  +           N V   L    +            +Q    +L+Q   +    
Sbjct: 370 HSFLKDES------QELMNLVQKELCFIKDLLKNKSLKLKELMQLFFMQLDQIKLSYV-- 421

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 +V +M +  ++GL    V ++D        + I ++ +   +    G+  +  +
Sbjct: 422 ---GGGKVTVMGLLESRGLSFDGVVILDFNEDFVPKRSINELFLNNEVRKKAGLISYERR 478

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
              +                    RL Y  + + + +L I    N    +          
Sbjct: 479 ENLQ--------------------RLYYENLMKNAKKLSISFVENEEQTRSRFLDELDFN 518

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            ++      +     L       E           ++   E+E +  +L       +  F
Sbjct: 519 FFEEKTTPSKAYLNALKLDYQGVELNLNPIKVPVLKHDIFEKELSFSRLNLFLYQKRTYF 578

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
                ++ E   L+                 +++  N+G  IHK+L++ +        N 
Sbjct: 579 YRYILELPEARALS----------------DESKAKNQGNFIHKMLELYYKNYSKNNFNL 622

Query: 805 --ITSYCTKNAK--LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EVSVSGK--INC 857
                   +          E +   L   +  EN              E        +N 
Sbjct: 623 KIFNDLLEQEYPKYSISELELEIFKLKFIQFAENE--KEHFKLGYKVIEQEEEHHKALNI 680

Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
               I + G +D+I   +   FI +YK+     +           QL+ Y+ +
Sbjct: 681 QNHTIRLKGIVDRIDKLEDKHFIIDYKSGKVPEKS---------FQLAFYKAL 724


>gi|313675648|ref|YP_004053644.1| hypothetical protein Ftrac_1546 [Marivirga tractuosa DSM 4126]
 gi|312942346|gb|ADR21536.1| hypothetical protein Ftrac_1546 [Marivirga tractuosa DSM 4126]
          Length = 941

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/473 (11%), Positives = 142/473 (30%), Gaps = 61/473 (12%)

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +LK P       D+ K      E+  +     +       +   +++ +        F  
Sbjct: 384 ILKHPFVGNLLGDVAKTKIHHIESNNIIRLELRDLYSENEEENTLLEILFNDGSDNYFLY 443

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                  +   +   +     F +E+   +++               +   I    +   
Sbjct: 444 LRTILQYVHQEQ--IESTEQEFISEIYKQINQLEQIISEF--KLVLDINAFIRLFNRIIQ 499

Query: 560 TIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
           +I+   S      ++IM V  ++ L+   ++ +      F      +  I  ++    G+
Sbjct: 500 SIRVPFSGEPLEGIQIMGVLESRNLDFENIYFLSMSEDNFPGGANNQSFIPYNIRKAYGL 559

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
           P    +    + I + L   L +                 S+QL +  +S+ S  K    
Sbjct: 560 PTLEQR----DAIYAYLFNRLLQR----------------SNQLHLMYNSDNSGGKGGEP 599

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
             +   +           ++ +     K + +  +     P +  +E+ E I Q++    
Sbjct: 600 SRYLLQLQY---------ELGIQTQKVKLQSLNQDPQAASPVSITVEKNEAIWQILKSY- 649

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
             K+  S           L        G    + +  D    + G I+H +++ ++    
Sbjct: 650 NEKRFLSASALKTYLNCRLQFYFRYIAGLKERDEVSEDLDAADFGNILHHVMEKLYGSVL 709

Query: 799 HKRKNF-ITSYCTKNAKLWPAKEYKNLL-----------------------LSITRLLE- 833
           ++  +        K+   +  +E+  L                          + ++L  
Sbjct: 710 NQLLDANKIILLKKDIDKFIKEEFAELYGKKEKVSEFEFEGRNIIIRDVVKRMVVQILNY 769

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
           +  +          E   +  +    + I + G ID++     +I + +YK+ 
Sbjct: 770 DAQIAPFTVKKVEGEYEFAIALE-DGQKIRLQGSIDRLDEQGTSIRVIDYKSG 821


>gi|229179097|ref|ZP_04306454.1| UvrD/Rep helicase [Bacillus cereus 172560W]
 gi|228604465|gb|EEK61929.1| UvrD/Rep helicase [Bacillus cereus 172560W]
          Length = 691

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 97/276 (35%), Gaps = 57/276 (20%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           + W      V DI K++ +  E  +  + K+ + L    +           L  F  T +
Sbjct: 329 EAWDRAIIPVEDIKKWMQV--EYKHYPLQKRRERLVGRMK-----RWIEIELKKFGETNE 381

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K   T+ +N       +    +   +  I       K+           + L    
Sbjct: 382 KKLLKKEATKRLNAYMKFWPK--MSALSLYSSIVKSKEILKVLP---------EELVKET 430

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLIQ 192
           E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  Q
Sbjct: 431 EKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQ 478

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             V++ +T              +   +GD  Q+IY + G   +     K + Q+      
Sbjct: 479 VYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY--- 522

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
                 EL  S+RST +I+   +++    E   GL+
Sbjct: 523 -----YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|229190910|ref|ZP_04317901.1| UvrD/Rep helicase [Bacillus cereus ATCC 10876]
 gi|228592578|gb|EEK50406.1| UvrD/Rep helicase [Bacillus cereus ATCC 10876]
          Length = 691

 Score = 75.0 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 105/322 (32%), Gaps = 57/322 (17%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           + W      V DI K++ +  E  +  + K+ + L    +           L  F  T +
Sbjct: 329 EAWDRAIIPVEDIKKWMQV--EYKHYPLQKRRERLVGRMK-----RWIEIELKKFGETNE 381

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               K   T+ +N               +   +    +  K  +         + L    
Sbjct: 382 KKLLKKEATKRLNAYMK--------FWPKMSALSLYSSIVKSKEILEVLP---EELVKET 430

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLIQ 192
           E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  Q
Sbjct: 431 EKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPFQ 478

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
              ++ +T              +   +GD  Q+IY + G   +     K + Q+      
Sbjct: 479 VYALKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY--- 522

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                 EL  S+RST +I+   +++    E   GL+     +         +    ++ +
Sbjct: 523 -----YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGEDVKVIHAENQFTEIVK 577

Query: 313 QVVSQHDSQCNPQQESWTSYFD 334
            V    ++          +  +
Sbjct: 578 TVKHLQNADVKTIAVIGRTEDE 599


>gi|295395902|ref|ZP_06806087.1| exodeoxyribonuclease V beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971175|gb|EFG47065.1| exodeoxyribonuclease V beta subunit [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 278

 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 65/214 (30%), Gaps = 34/214 (15%)

Query: 752 NEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR-- 801
            E   L+PS  +      L+             +    +G ++H +L+ +F +P  +R  
Sbjct: 2   AELIALSPSRANDFVSCPLKFRFRSVDKIPEPPSAAAFKGTLVHAVLEQLFDVPSRERTL 61

Query: 802 -----------KNFITSYCTKNAKLWPAKEYKNLLLSITRLLE---NPMMTTAMSCDSYS 847
                       +                +   L      L+       +   +  D+  
Sbjct: 62  DHATTLIKPTYASLAQENSDVPDLFPEQTDRDRLFSESQALVRAYFALELPQNLEPDAR- 120

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           E  V   +      + + G ID++  +    + + +YKT      +          Q+  
Sbjct: 121 EKFVQTVLP---GGLKLRGFIDRVDRAPGGEVRLVDYKTGKAPKPQYSGDAD---FQMRF 174

Query: 907 YEKILKDSYPNKSLVCL-LIYVSEPKVFIIPQNK 939
           Y  ++      +++  L L+Y+    V  +    
Sbjct: 175 YA-LVHYLLTGETVHTLQLMYLGSGNVKELQPTM 207


>gi|57169066|ref|ZP_00368193.1| conserved hypothetical protein [Campylobacter coli RM2228]
 gi|57019524|gb|EAL56215.1| conserved hypothetical protein [Campylobacter coli RM2228]
          Length = 788

 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 73/593 (12%), Positives = 175/593 (29%), Gaps = 73/593 (12%)

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
            +    D L        +   +  +   ++  + + +      ++A ++  L        
Sbjct: 195 EYLLELDFLKDIHLELDMFYEVNLSQKKILKQEKLSNPNTLVKLKAFELRSLQCA-FVMD 253

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI--LSQEDDLSFVCMLKSPL 445
            I+   R   +  KI+V+  D     + L + D   +  F   +S ++ L +  +     
Sbjct: 254 EISNFVRAGIDPEKIAVITPD-ESFCELLKLFDKNNMLNFASGVSIKESLFYQKIKALYN 312

Query: 446 FNFSEDDIFKICTQR-HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
              S+  I+KI      + + +++Y     +    +F+       ++  +  F +     
Sbjct: 313 GANSDAFIYKIDENYFEQEKMIFDYHNTLLHYLELQFEDFRTRFDQICDLQYFEN---LI 369

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              L  +           N V   L    +            +Q    +L+Q   +    
Sbjct: 370 HSFLKDES------QELMNLVQKELCFIKDLLKNKSLKLKELMQLFFMQLDQIKLSYV-- 421

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 +V +M +  ++GL    V ++D        + I ++ +   +    G+  +  +
Sbjct: 422 ---GGGKVTVMGLLESRGLSFDGVVILDFNEDFVPKRSINELFLNNEVRKKAGLISYERR 478

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
              +                    RL Y  + + + +L I    N    +          
Sbjct: 479 ENLQ--------------------RLYYENLMKNAKKLSISFVENEEQTRSRFLDELDFN 518

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            ++      +     L       E           ++   E+E +  +L       +  F
Sbjct: 519 FFEEKTTPSKAYLNALKLDYQGVELNLNPIKVPVLKHDIFEKELSFSRLNLFLYQKRTYF 578

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ-VIFTLPEHK-RK 802
                ++ E   L+                 +++  N+G  IHK+L+       ++    
Sbjct: 579 YRYILELPEARALS----------------DESKAKNQGNFIHKMLEFYYKNYSKNNFNL 622

Query: 803 NFITSYCTKNAK--LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-EVSVSG--KINC 857
                   +  +       E +   L   +  +N              E        +N 
Sbjct: 623 KIFNDLLEQEYQKYGISELELEIFKLKFIQFAKNEE--EHFKLGYKVIEQEEEHHKTLNI 680

Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
               I + G +D+I   +   FI +YK+     +           QL+ Y+ +
Sbjct: 681 QNHTIRLKGIVDRIDKLEDKHFIIDYKSGKVPEKS---------FQLAFYKAL 724


>gi|229116325|ref|ZP_04245715.1| UvrD/Rep helicase [Bacillus cereus Rock1-3]
 gi|228667157|gb|EEL22609.1| UvrD/Rep helicase [Bacillus cereus Rock1-3]
          Length = 691

 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 104/323 (32%), Gaps = 59/323 (18%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETG--NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
           + W      V DI K++ +  +         +    +++  + +        L  F  T 
Sbjct: 329 EAWDKAIIPVEDIKKWMQVEYKHYPLKKRRERLVGRMKRWIEIE--------LKKFGETN 380

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
           +    K   T+ +N               +   +    +  K  +         + L   
Sbjct: 381 EKKLLKKEATKRLNTYMK--------FWPKMSALSLYSSILKSKEILEVLP---EELVKE 429

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLI 191
            E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  
Sbjct: 430 TEKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPF 477

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  V++ +T              +   +GD  Q+IY + G   +     K + Q+     
Sbjct: 478 QVYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY-- 522

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                  EL  S+RST +I+   +++    E   GL+     +         +    ++ 
Sbjct: 523 ------FELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGEDVKVIHAEDQFTEVL 576

Query: 312 EQVVSQHDSQCNPQQESWTSYFD 334
           + +    +           +  +
Sbjct: 577 KTIKHLQNEDVKTIAVIGRTDDE 599


>gi|328946441|gb|EGG40581.1| exonuclease RexB [Streptococcus sanguinis SK1087]
          Length = 1093

 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 65/646 (10%), Positives = 177/646 (27%), Gaps = 101/646 (15%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A +I   +             ++ KDI +L+    D        + + + Y+I    
Sbjct: 308 EYVAKSIRQRVHDG----------VRYKDIRLLL---GDVEAYQLQLKTIFDQYQIPYYL 354

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETET 465
                +  H  ++ + +L R           + +LK+ L+   +++++          + 
Sbjct: 355 GRSESMAQHPLVQFVESLERLKRYNFQLEDLLNLLKTGLYGDLTQEELDHFEQYLRFADI 414

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR-FGNE 524
                        S+ +  +  ++ +           F +    A     +F        
Sbjct: 415 KGASKLAKDFTANSQGKFALDRLNHIRRRVMAPLQDFFKSRSQTASGLLAKFTEFVQAAS 474

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH------------------- 565
           + D L   L    + EQ  +  + +  S + +    +                       
Sbjct: 475 LSDNLTALLQGASQQEQERHEEVWKAFSHVLEQFAQVFVDSKVKLDDFLALILSGMLLSN 534

Query: 566 ----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL--------- 612
                A  + V++ +    + L +P V+ +    + F      K  +             
Sbjct: 535 YRTVPATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATD 594

Query: 613 -NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---- 667
              +  I       K+R   +S +    K+        +  V  + ++  L +       
Sbjct: 595 SQAELQIASSENLKKNRYTALSLINSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSL 654

Query: 668 ---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                       +  ++  ++       +     + T        +A            +
Sbjct: 655 PIIVKKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGI 714

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LESL 773
                 K L  E   P+ L +    +  +P  L+ S ++   +              E  
Sbjct: 715 SMPRISKVLETESLQPETLQALYPQE--QPLRLSASALNEYFRHQYAYFLKYVLRLQEEW 772

Query: 774 LSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCT-----KNAKLWPAKEYKNLLL 826
                  + G+ +H++ + +          +    +        +   ++          
Sbjct: 773 TIHPDARSHGIFLHRIFEKVLQDDSSADFDRRLARAMEETSRETEFESIYSESGQTRFAR 832

Query: 827 SIT--------RLLENPMMTTAMSCDSY---SEVSVSGKINCPKKD-IIISGRIDQISIS 874
            +         R+L +P     +  ++    +       +       + +SG++D+I   
Sbjct: 833 QLLLDTARATGRVLAHPSGIETIGEETGFGSASKPF---LTLENGRAVTVSGKVDRI--- 886

Query: 875 QQNIF------IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
              +       + +YK+        E       +QL  Y   +++ 
Sbjct: 887 -DRLTKTESLGVVDYKSGDIKF-SFEKFFNGLNSQLPTYLAAIEEL 930


>gi|312863156|ref|ZP_07723394.1| ATP-dependent nuclease subunit B [Streptococcus vestibularis F0396]
 gi|311100692|gb|EFQ58897.1| ATP-dependent nuclease subunit B [Streptococcus vestibularis F0396]
          Length = 1106

 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 74/661 (11%), Positives = 190/661 (28%), Gaps = 89/661 (13%)

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
           + +      +   + +  +      ++A +I  ++              + KDILVL+  
Sbjct: 285 DEKVTEQDKHALQVWEVVNQKEEVAQVAKSIRQLLADGK----------RYKDILVLL-- 332

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
             D          +   + I         ++ H  ++ + +L R           + ++K
Sbjct: 333 -GDEESYKLQVGQIFRKFDIPYYFGKEESMSSHPLVQFVDSLERIKRYNYRTEDLLNLVK 391

Query: 443 SPL-FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           S L   F+++++       +  +    +         S+ ++ +  ++ L          
Sbjct: 392 SGLHGGFAQEELDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDKLNALRSQLLEPLDK 451

Query: 502 DFFTLILGAKKGRQQFISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
              +         ++ +      +V   +          E+     + ++ ++L +   T
Sbjct: 452 LLNSRKQKGSSLLKKLVVFLEAVQVPSKMAALTAKASEAEKEQNEQVWKVFTQLLEQVET 511

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
           I    + + ++   +        +   V    T   V   K+              G+  
Sbjct: 512 IFGKETLSVDDFLSILRSGMSACDYRTV--PATVDVVNVKKYDLIQPYSAPYVFALGMTQ 569

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL------------YVGMT---RASDQLIIC 665
                  +N  +    +  + +   + +R L            +V M+    AS+QL++ 
Sbjct: 570 SHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLS 629

Query: 666 KH----------------------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
           +                              N    K      + D++      +     
Sbjct: 630 QPQILNETQDDMSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLD 689

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
           + L         +A  +     +   +     I  +   +    +    +     EP  L
Sbjct: 690 VDLDKDTQTFWSVAVRYLRKRLDKDQVLIPTVIDDVTTTK--VDEQVMQLVFPGEEPLKL 747

Query: 758 NPSTIDTKGK----------TNLESLLS-DNQTFNRGLIIHKLLQV-IFTLPEHKRKNFI 805
           + S + T               LE L S      + G  +H++ +  +         + +
Sbjct: 748 SASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSSENFDDKL 807

Query: 806 TSYCTK------NAKLWPAKEYKNLLLSITRLLE---NPMMTTAMSCDSYSEVSVSGKIN 856
                +         L+   +   L   I   +      ++    +     E     K +
Sbjct: 808 EKAIAQTNQEQPFEILYTEDQESRLSRQILEDIARSTASVLRDNAAVKVERE---EAKFD 864

Query: 857 CPKKD-IIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
               + I I+G ID++         + +YK+  +V  +I+        QL  Y + L+ +
Sbjct: 865 LLLANSIKITGIIDRVDRLTDGALGVVDYKSGKNVF-DIQKFYNGLSPQLVTYLEALRQT 923

Query: 915 Y 915
           Y
Sbjct: 924 Y 924


>gi|154244623|ref|YP_001415581.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
 gi|154158708|gb|ABS65924.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2]
          Length = 595

 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 60/437 (13%), Positives = 124/437 (28%), Gaps = 80/437 (18%)

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
           SA IR  I      I++DE QDT+  QW V+++L                L A+ D +Q 
Sbjct: 162 SARIRRLIASMYPVIILDEFQDTNEAQWRVVQAL-----------GEVCRLIALADPEQR 210

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY + GA+P R+   +           +   +     + RS    +     +F       
Sbjct: 211 IYDWIGADPARLDHFREAF--------KPTEVDLSTDNHRSAGTEI----ALFGNDVLTG 258

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
              +DS   I                                           + + + L
Sbjct: 259 KFRQDSYKGIDFDVFDPFP----------------------------------DPAMTKL 284

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              +      ++    +  +          + VLV  +K T L++   R       + V 
Sbjct: 285 VTTVYKARKRLVDAGVVNWS----------LAVLVPTKKMTRLVSDAFRQ-PPAGMVEVP 333

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI------FKICTQ 459
            +    L   +   +++AL            F+ ++ +       D             +
Sbjct: 334 HSAVIELEAAILGAEIIALLMQPADDRHFGQFIDLMCNYFQGKGGDGPTQGALKEAANIR 393

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI--LGAKKGRQQF 517
           +   E +       A    S   ++I    +         P + +  +  +    G  + 
Sbjct: 394 KAYDEWLACRAAGKAIRKNSMLVNMIAVYEQARTAVLTGDPDEDWRAVRRVLEDGGCARL 453

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL----EQYPPTIKRAHSANHNEVR 573
                      + E      +     +       + L    + +       ++   + V 
Sbjct: 454 KEIGQEVRNLRILERGTQLRQELSQDWRDSGGYRNALAITRQAFIQEHFSTNAKPESGVV 513

Query: 574 IMTVHTAKGLESPVVFL 590
           +M +H AKG +   V +
Sbjct: 514 VMNMHKAKGKQFDEVII 530


>gi|46908501|ref|YP_014890.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 4b
           F2365]
 gi|81565412|sp|Q71X98|ADDB_LISMF RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|46881773|gb|AAT05067.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes serotype
           4b str. F2365]
          Length = 1157

 Score = 74.6 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 75/701 (10%), Positives = 192/701 (27%), Gaps = 160/701 (22%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           Q ++       +A  I  +               + +D+ +L R   D  ++        
Sbjct: 307 QANNRRAEIEGVAREIRQLTLNG----------YRYQDMAILTRNLGDYDVLCETVME-- 354

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
             Y I +  + +  ++ H  I+ + +    IL + + +  F  +     F  +E      
Sbjct: 355 -SYNIPIFIDKKRAMSKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFGVAEKSSVLR 413

Query: 453 --------------IFKICTQRHETETVYEYIQKFANCGISKF------QHVIKYIHELI 492
                         I        E + +Y  I+  +   + +       Q +I  +  LI
Sbjct: 414 RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDGEIQTQSIINEMRSLI 473

Query: 493 ----------------HIAQFCSPHDFFTLI------------LGAKKGRQQFISRFGNE 524
                            +    + + F   +               +   +  ++R   +
Sbjct: 474 VNPLSTLELNLKKAKTGMEFALALYHFLEQVNAVERLESWRQRAEEQGYLE--LAREHEQ 531

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGL 583
               +   L+  +         L   +  +              + ++V +  +  AK L
Sbjct: 532 AWSAISALLDEFVEVLGKETLDLNSFVEIIATGLDALEFSLLPPSLDQVVLSDMENAKLL 591

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           +  V+F +     V   +      +     D     +   +  ++NNI            
Sbjct: 592 DMKVIFAIGMNDGVMPLRQKDNGILSDQDRDALRAEVSNLKPSAKNNIG----------- 640

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
             E + L Y  ++  SD+L +   +     K  ++  +   +   F        +     
Sbjct: 641 --EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFKKLSESVYLTDPGL 698

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY-------- 755
           ++  E  +Y  S          + +  K+      +    ++    +  E          
Sbjct: 699 LSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPLSSVWWDAYNSYFENGKESRMAKQVLSS 758

Query: 756 -----------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFN 781
                                    + S ++                  E      Q  +
Sbjct: 759 LYYENKTKPLQEKTAKNLFGETIHASVSRMEKFFSCEFQHFAQYGLKLEERGHFQLQAVD 818

Query: 782 RGLIIHKLLQVIFT------------LPEHKRKNFITS--YCT---KNAKLWPAKEYKNL 824
            G I H  ++ I                +  R+    +  +     ++  L  +K  + +
Sbjct: 819 MGEIFHGAMEWISAELKRNNLDWGSLTDQECRQMAKLAMTFLAPKIQHEILLSSKRMEYI 878

Query: 825 LLSITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
              + +++     ++       ++  V +                     ++++ GRID+
Sbjct: 879 QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKISLQANSELLLQGRIDR 938

Query: 871 I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           I  +  +    + I +YK+  H    +  + Y    Q+  Y
Sbjct: 939 IDMAEQEDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTY 978


>gi|229151022|ref|ZP_04279233.1| UvrD/Rep helicase [Bacillus cereus m1550]
 gi|228632582|gb|EEK89200.1| UvrD/Rep helicase [Bacillus cereus m1550]
          Length = 691

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWNAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLATPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + V    ++          +  D           A     
Sbjct: 557 FRSGEDVKVIHAENQFTEIVKTVKHLQNADVKTIAVIGRTE-DECRDIYVELTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|324993969|gb|EGC25888.1| exonuclease RexB [Streptococcus sanguinis SK405]
 gi|324994712|gb|EGC26625.1| exonuclease RexB [Streptococcus sanguinis SK678]
 gi|327463227|gb|EGF09548.1| exonuclease RexB [Streptococcus sanguinis SK1]
 gi|327489959|gb|EGF21748.1| exonuclease RexB [Streptococcus sanguinis SK1058]
          Length = 1093

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 66/646 (10%), Positives = 178/646 (27%), Gaps = 101/646 (15%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A +I   +              + KDI +L+    D        + + + Y+I    
Sbjct: 308 EYVAKSIRQRVHDG----------ARYKDIRLLL---GDVEAYQLQLKTIFDQYQIPYYL 354

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETET 465
                +  H  ++ + +L R           + +LK+ L+   +++++          + 
Sbjct: 355 GRSESMAQHPLVQFVESLERLKRYNFQLEDLLNLLKTGLYGGLTQEELDHFEQYLRFADI 414

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
                        S+ +  +  ++ +           F +    A     +F   F    
Sbjct: 415 KGSAKLAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFFQAAR 474

Query: 526 -IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH------------------- 565
             D L   L    + EQ  +  + +  S + +    +                       
Sbjct: 475 LSDNLTALLQGESQQEQERHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSN 534

Query: 566 ----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL--------- 612
                A  + V++ +    + L +P V+ +    + F      K  +             
Sbjct: 535 YRTVPATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATD 594

Query: 613 -NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH---- 667
              +  I       K+R   +S +    K+        +  V  + ++  L +       
Sbjct: 595 SQAELQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSL 654

Query: 668 ---SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                       +  ++  ++       +     + T        +A            +
Sbjct: 655 PIIVKKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGI 714

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LESL 773
              +  K+L  E   P+ L +    +  +P  L+ S ++   +              E  
Sbjct: 715 SIPQISKELKTESLQPETLQALYPQE--QPLRLSASALNEYFRHQYAYFLKYVLRLQEEW 772

Query: 774 LSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCT-----KNAKLWPAKEYKNLLL 826
                  + G+ +H++ + +          +    +        +   ++          
Sbjct: 773 TIHPDARSHGIFLHRIFEKVLQDDSSADFDRRLARAMEETSREAEFESIYSESGQTRFAR 832

Query: 827 SIT--------RLLENPMMTTAMSCDSY---SEVSVSGKINCPKKD-IIISGRIDQISIS 874
            +         R+L +P     +  ++    +       +       + +SG++D+I   
Sbjct: 833 QLLLDTARATGRVLAHPTGIETIGEETGFGSASKPF---LTLENGRAVTVSGKVDRI--- 886

Query: 875 QQNIF------IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
              +       + +YK+        E       +QL  Y   +++ 
Sbjct: 887 -DRLTKTESLGVVDYKSGDIKF-SFEKFFNGLNSQLPTYLAAIEEL 930


>gi|119716861|ref|YP_923826.1| hypothetical protein Noca_2636 [Nocardioides sp. JS614]
 gi|119537522|gb|ABL82139.1| conserved hypothetical protein [Nocardioides sp. JS614]
          Length = 299

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 73/233 (31%), Gaps = 33/233 (14%)

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIH 787
             + P    S   + ++    L+PS         L              +    RG ++H
Sbjct: 4   PSESPAIRVSTPVDGVDVLGALSPSRAGDFMSCPLLYRFRTVDRLPEPFSPDAVRGTVVH 63

Query: 788 KLLQVIFTLPEHKR---------KNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN--PM 836
           K+L+ +F LP   R         +           +L            +   L +   +
Sbjct: 64  KVLEDLFDLPAGDRTPDRAQAMLEPAWERLVEAAPELSELFPVDEDGAQVAAWLASCRAV 123

Query: 837 MTTAMS-CDSYSEVSVSGKINCP---KKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQ 891
           +    +  D         ++         +++ G +D+I ++      + +YK+     +
Sbjct: 124 LERYFTLEDPRRLEPAERELYVEALLDSRLLLRGFVDRIDVAPDGAIRVVDYKSGRSPSE 183

Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL---LIYVSEPKVFIIPQNKLN 941
             E      + Q+  Y  +    +  + +V     LIY+   ++     ++ +
Sbjct: 184 MFEAKA---LFQMKFYALV---IWRTRGVVPAMLQLIYLGNGELLRYVPDERD 230


>gi|255100076|ref|ZP_05329053.1| ATP-dependent nuclease subunit B [Clostridium difficile QCD-63q42]
          Length = 1155

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 107/917 (11%), Positives = 247/917 (26%), Gaps = 204/917 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   +E    +   +D         D+L        +   +D     + IDE    +  Q
Sbjct: 164 IYNSFEGKLHE-NYVD-------AQDMLTSLASKIELSSYLDG--ACVYIDEFTGFTPNQ 213

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + VI+S+           S    +    D+   I     ++     R K    K      
Sbjct: 214 YNVIKSIL--------NKSKSVNISLTVDD---INYIGYSKSDMFSRTKFTYSKLTQLCN 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           ++   I   ++         +   V    E  + L                    ++ + 
Sbjct: 263 EEGIKILPQVN---------LNTGVIKRFEKVKELQH------------------LERFY 295

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +      + +   +          IA  I +++           + ++
Sbjct: 296 NAYPYKIYSNPTENIKIKEFNNLYSEVEE-------IAREIVHLVRD---------KNVR 339

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +  R   D     FL   + N+Y I    + +     +  +  +++       + 
Sbjct: 340 YRDITIATR---DLNRYDFLVHSIFNEYNIPNFIDKKREAKSNPIVILIISTLEMKNRRY 396

Query: 433 DDLSFVCMLKSPLFNFSEDDI-----------------FKICTQRHETETVYEYIQKFAN 475
              +    LKS L     DDI                 F        T+++     +F  
Sbjct: 397 GYETMFRYLKSGLIGIDNDDINLLENYVLANGIKGKKWFDEKWDYRITQSLSGQESEFEL 456

Query: 476 CGISKFQHVIKY---------------------IHELIHIAQFCSPHDFFTLILGAKKGR 514
               K   +                           +       +  +    ++   K +
Sbjct: 457 ELKEKINEIKNRVLEPIVILQEKLRGKNRVKEICRYIYEFLLDINMPETIESLIVNFKDK 516

Query: 515 QQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEV 572
            +  ++   ++V D++ + L+  +    +   SL++ I  +       +        ++V
Sbjct: 517 GELDVANQYSQVWDIVVDILDQMVELMGDEIISLEKFIKLITLGFDEYELGLVPPSIDQV 576

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            + +V   K  ++  ++LV T   VF         +  +  +  G         S+    
Sbjct: 577 LVSSVDRMKNPDTKYLYLVGTTDGVFPLITKDSGILSDNDRESLGNKGIEVDIDSKTRSF 636

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                        E   L+Y  +T  S  L I    +    K          +   F N 
Sbjct: 637 -------------EEQFLVYKALTSTSKNLTITYPISDHEGKTLRPSIIISRLKKIFPNI 683

Query: 693 ERVKKIKLTN-SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
           E    +   N S +KD        +          +       + ++I        +  +
Sbjct: 684 ENKSYLVEENKSTDKDILKKITVKSPTFNELINIIKNYDSDGYNTEEINSIWLDIYRYYL 743

Query: 752 NEPYI---------------------------------LNPSTIDTKGKTNLESLLS-DN 777
            +                                    L+ S ++   +      +    
Sbjct: 744 KDEVYSSITKKVIKGLSYTNQVHKIEEKKIRSLYKSNSLSISRLEKYAECPFAYFIQYGL 803

Query: 778 QTFNR----------GLIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLW-------- 816
           +   R          G  IH +L              ++    Y      +         
Sbjct: 804 KAKKRKEYSFTPPDLGTFIHNILDRFSKELLQDNLTWRDIDEKYIELKIGIIVDEIILKI 863

Query: 817 ------PAKEYKNLLLSITRLLENPM--MTTAMSCDSYSEVSVSGKINCPKK-------- 860
                  ++ YK L   +  +L   +  ++  +   S+  +    K     K        
Sbjct: 864 PGYILNSSERYKYLAYRLKNMLTTAITIISQQIKQGSFEPIDYEVKFGNNGKYPPIKMVL 923

Query: 861 ----DIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
               ++ + G+ID++   ++     I I +YK+  +    +  I Y    QL +Y   + 
Sbjct: 924 ENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG-NKSISLTEIYYGLQLQLLVYLDAIL 982

Query: 913 DSYPNKSLV---CLLIY 926
           +S  ++ +      ++Y
Sbjct: 983 ESAKDEDININPAAILY 999


>gi|315283381|ref|ZP_07871589.1| ATP-dependent nuclease subunit B [Listeria marthii FSL S4-120]
 gi|313612971|gb|EFR86905.1| ATP-dependent nuclease subunit B [Listeria marthii FSL S4-120]
          Length = 1157

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 83/746 (11%), Positives = 199/746 (26%), Gaps = 165/746 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       IA  I  +  +            + +D+ +L R   D  ++        
Sbjct: 307  QANNRRAEIEGIAREIRQLTLSG----------YRYRDMAILTRNLGDYDILCETVME-- 354

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I +  + +  +  H  I+ + +    IL + + +  F  +     F+ +E+     
Sbjct: 355  -SYDIPIFIDKKRAMAKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITENSSALR 413

Query: 453  --------------IFKICTQRHETETVYE-----------------YIQKFANCGISKF 481
                          I        E + VY                  + Q   N   +  
Sbjct: 414  RKSDILENYVLENGIQNKWKWEKEGDWVYRKIRGLSTNVLPQTDEEIHTQSIINEMRNMI 473

Query: 482  QHVIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQF--------------ISRFGNEVI 526
               +  +   +  A             L   K  ++               ++R   +  
Sbjct: 474  LAPLSTLENNLRKANTGMEFALALYHYLEQVKAVERLESWRQRAEEQGYLELAREHEQAW 533

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLES 585
              +   L+  +         L      +              + ++V +  +  AK L+ 
Sbjct: 534  SSISALLDEFVEVLGKETLDLISFTEIIATGLDALEFSLLPPSLDQVVLADMENAKLLDM 593

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V+F +     V   +   K  +     D         +  ++NNI              
Sbjct: 594  KVIFAIGMNDGVMPLRQKDKGILSDQDRDALRAEDSNLKPSAKNNIG------------- 640

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E + L Y  ++  SD+L +   +     K  ++  +   +   F        +   + ++
Sbjct: 641  EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFKELNESVYLTDPSLLS 700

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY---------- 755
             +E   Y  S          + +  K+      +    ++    D  E            
Sbjct: 701  DEEQSNYIRSKQATLGLLTSQLQMYKRGYPLSNVWWDAYNSYFEDAKESRMAKQVLSSLY 760

Query: 756  ---------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
                                   + S ++                  E      Q  + G
Sbjct: 761  YENKTKPLQEITAKNLFGETIHASVSRMEKFFSCEFQHFAQYGLKLEERGHFQLQAVDMG 820

Query: 784  LIIHKLLQVIFT------------LPEHKRKNFITS--YCT---KNAKLWPAKEYKNLLL 826
             I H  ++ I                E  R+    +  +     ++  L  +K  + +  
Sbjct: 821  EIFHGAMEWISAELKRNNLDWGNLTEEECRQMAKQAMTFLAPKIQHEILLSSKRMEYIQY 880

Query: 827  SITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQI- 871
             + +++     ++       ++  V +                     ++++ GRID+I 
Sbjct: 881  KLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDRID 940

Query: 872  -SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLV--CL 923
             +       + I +YK+  H    +  + Y    Q+  Y  I+         K+     +
Sbjct: 941  MAEQDDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPAGV 999

Query: 924  LIYVSEPKVF----IIPQNKLNKAFA 945
            L +    +       +    ++K   
Sbjct: 1000 LYFHMHNQYVQAEKELSDEAISKELQ 1025


>gi|49477866|ref|YP_036897.1| UvrD/Rep helicase family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|301054335|ref|YP_003792546.1| UvrD/Rep helicase family protein [Bacillus anthracis CI]
 gi|49329422|gb|AAT60068.1| UvrD/Rep helicase family protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|300376504|gb|ADK05408.1| UvrD/Rep helicase family protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 689

 Score = 74.6 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|229097330|ref|ZP_04228292.1| UvrD/Rep helicase [Bacillus cereus Rock3-29]
 gi|228686141|gb|EEL40057.1| UvrD/Rep helicase [Bacillus cereus Rock3-29]
          Length = 691

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 105/323 (32%), Gaps = 59/323 (18%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETG--NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
           + W      V DI K++ +  +         +    +++  + +        L  F  T 
Sbjct: 329 EAWDKAIIPVEDIKKWMQVEYKHYPLKKRRERLVGRMKRWIEIE--------LKKFGETN 380

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
           +    K   T+ +N               +   +    +  K  +         + L   
Sbjct: 381 EKKLLKKEATKRLNTYLK--------FWPKMSALSLYSSILKSKEILEVLP---EELVKE 429

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLI 191
            E++ +K  V             ++      +I ++I      Q+ +H++IDE QD S  
Sbjct: 430 TEKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFSPF 477

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  V++ +T              +   +GD  Q+IY + G   +     K + Q+     
Sbjct: 478 QVYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWNAFKEVFQETGY-- 522

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                  EL  S+RST +I+   +++    E   GL+     +         +    ++ 
Sbjct: 523 ------FELTRSYRSTKEIIEFANEIIKNAEIPVGLATPVFRSGEDVKVIHAEDQFTEVL 576

Query: 312 EQVVSQHDSQCNPQQESWTSYFD 334
           + +    ++          +  +
Sbjct: 577 KTIKHLQNADVKTIAVIGRTDDE 599


>gi|317128675|ref|YP_004094957.1| ATP-dependent nuclease subunit B [Bacillus cellulosilyticus DSM
           2522]
 gi|315473623|gb|ADU30226.1| ATP-dependent nuclease subunit B [Bacillus cellulosilyticus DSM
           2522]
          Length = 1171

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 99/964 (10%), Positives = 247/964 (25%), Gaps = 224/964 (23%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH----Y 137
           K   T     +   +  +LK+       + +++   +  ++   S  + +         Y
Sbjct: 111 KASDTNGFIDQLEQMITELKRYDVSADTLTEQYEALEQRENKRPSEQILQEKLHDIGIVY 170

Query: 138 EEA----KKKN-CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
                  K +     D+         LL ++   +    +     +HI ID     + ++
Sbjct: 171 NNLGKHFKDEYVGAEDY-------LHLLSEKVAHSNYLKQ-----SHIFIDGFHSFTPLE 218

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             VI+ L         + +  R              +  AE    L       K      
Sbjct: 219 MLVIQELMLHCTHTTFSFTLDRH-------------YDTAEVLNELDLFFETAKSYQTIQ 265

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                  L ++      IL +  +  S        +                        
Sbjct: 266 NVCREHNLEVNR---PFILQMSLRFKSKAIAHLEKNY----------------------- 299

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                   +  P     T+    +            IA  I +++           +  +
Sbjct: 300 --------EIRPSPVYETNDGIRVISAVHRRSEVEGIAREILHLVRD---------KSYR 342

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            ++I++++R   D    T L + +  DY I +  + +  + +H  I+ + +    I    
Sbjct: 343 FQEIVLILRNITD---YTDLLQTVFEDYGIPLFMDQKRSMLNHPVIEFIRSSLEVIYGNW 399

Query: 433 DDLSFVCMLKSPL------------------------FNFSEDDIFKICTQRHETETVYE 468
              +    LK+ +                        +       +      +       
Sbjct: 400 RYEAVFRCLKTDMLFPLESHVSEMRERVDQLENYVLSYGIKGVRWYDKKPWSYRRVKTSA 459

Query: 469 YIQKFANCGISKFQHVIKYIHE-------LIHIAQFCS------------------PHDF 503
             ++       +F+  I  +          +      S                    + 
Sbjct: 460 DGERKRTTAEDEFEQEINQLRNELTKPLIWLQKQMKASKTVTEKCETIYHYLVMCQIPEK 519

Query: 504 FTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
              +       ++   ++  ++V   + E L+  +    +   S +     ++    ++K
Sbjct: 520 IERMRNDSVASEELQRAKEHDQVWSAIVELLDQMVEMAGDEDVSSELYKKMIDTGVESMK 579

Query: 563 RAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            A      ++V +  +  ++       F++     +   K  +   +     D     + 
Sbjct: 580 FAIIPPAIDQVIVADMEHSRLSNIRCAFILGVNDGIIPAKPDEGSIVTEEERD----TLA 635

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                   +    L+             L+Y+  + AS+ L           K       
Sbjct: 636 QAGINLAPSSTRQLLN---------ETFLMYLAQSTASELLYFTYPLADEEGKSLQPSIV 686

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDE-------------------------------WI 710
              + D F + E          +  +E                               W 
Sbjct: 687 LKRIKDFFPSLEEELWFHEPTDMTDEEQFFFINGSDKTLSYLTFVLQSWKKGYSIPSFWW 746

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                    EN   + ++ +  L  + K  +      K    +  + + S ++       
Sbjct: 747 DVYNWYVANENWNFKVKQVLHSLFYKNKAQQLSKHTSKELYGDHLVTSVSRMEQYQSCAF 806

Query: 771 -----------ESLLSDNQTFNRGLIIHKLLQVIFT-----------LPEHKRKNFITSY 808
                      E      +  + G + H  L+ +             L + +        
Sbjct: 807 AQFANYGLRLKERETYKLEAPDVGTLFHAALKEMADYLRRNGKDFSQLSKEECSTLAKKI 866

Query: 809 CTKNAKLWPAK-------------EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
             + A     +             + + ++   + +L     ++  S     EV+     
Sbjct: 867 VEELAPKIQREILLSSNKYHYIKQKLEEVVARASHVLAEQSRSSGFSPIGL-EVAFGENQ 925

Query: 856 NCPKKDIIIS--------GRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQ 903
           + P     +         GRID++ +++      + I +YK+      E+  + Y    Q
Sbjct: 926 DLPPLQFQLQNGTTMELVGRIDRVDMAEGRDGLYLRIIDYKSSAKNI-ELSEVYYGLSLQ 984

Query: 904 LSIY 907
           L IY
Sbjct: 985 LLIY 988


>gi|196032231|ref|ZP_03099645.1| uvrD/Rep helicase family protein [Bacillus cereus W]
 gi|228946425|ref|ZP_04108746.1| UvrD/Rep helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|195994982|gb|EDX58936.1| uvrD/Rep helicase family protein [Bacillus cereus W]
 gi|228813288|gb|EEM59588.1| UvrD/Rep helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 689

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|254722784|ref|ZP_05184572.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A1055]
          Length = 689

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|228915411|ref|ZP_04079004.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228844354|gb|EEM89412.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 689

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|86139559|ref|ZP_01058127.1| hypothetical protein MED193_00385 [Roseobacter sp. MED193]
 gi|85823742|gb|EAQ43949.1| hypothetical protein MED193_00385 [Roseobacter sp. MED193]
          Length = 863

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 53/595 (8%), Positives = 151/595 (25%), Gaps = 76/595 (12%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A   A  + +++    + S  +  ++   D                      +   +
Sbjct: 213 REEAEFAAARVQSLLDAGIVESPAQVGLLVPDD-----------ASYQRALEEAFDRVGL 261

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
            + G            + ++ L   +       +   +  SP   ++++    +   R +
Sbjct: 262 PLSGKPIEPALRDTVGELMILLLALLERPAPRTAIASLYISPTMPWAKET--GLRMAREQ 319

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            +  +       +    +    ++       +    +                +  +   
Sbjct: 320 MDYGWSRTAAGLDGPARELLDALRPCSTPEQLFGRLTA---IAKAAPEAGLWPKLQAIRT 376

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
             V  +    L        +  S     +  +  +  T                      
Sbjct: 377 AVVDQIDWPLLRSIALPRPSEPSGHNRFVEGVSLFAETALPWRPVRQ------------- 423

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
                + ++    + +            S                +  +     +     
Sbjct: 424 -----LIVLGLAGRTWPRPPASNPFFTESEIVLIR---------EKTGLYLAGRQQKMAR 469

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
             E + R L      A+  +     S T   +K    T   ++      +   K I+  +
Sbjct: 470 GVELFRRQLCAASEAATFLV----PSCTLGGEKLASSTGLSLITHMMGFESSEKAIRDIH 525

Query: 703 SINKDEWIAYEWSTHH------PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
           + ++  W     +         P    +        L+  ++  +   +P      E  I
Sbjct: 526 AEDQSLWPVAAEAPLPIASGGKPSVPAIGLLHLGSDLLRLREDDETGHAPQSPSRLETLI 585

Query: 757 LNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-------------IFTLPEHKR 801
           ++P    +D  G  +             G ++H +++V             I        
Sbjct: 586 VSPLAWLLDELGAKDRTWAPETLDVMALGTLLHHVMEVVFPEGTKMPDQTIIANAVPAAV 645

Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV-SVSGKINCPKK 860
            + I  Y    +      E ++LL     +  N         ++ +EV     ++     
Sbjct: 646 DDAIRRYAAWLSNDAWDTERQSLLREAYNVTSN---WVVFLHETQAEVLHNEIRLAGDHG 702

Query: 861 DIIISGRIDQISIS-QQNIFIFEYKTHHHVP-QEIEHIPYTHIAQLSIYEKILKD 913
            +++ G  D +       I I ++K          + +      Q+++Y+ +L+ 
Sbjct: 703 GLLLRGNADCLLKLPDGRILIIDHK--RSSSGGRRDRMAKGWDLQVALYQAMLER 755


>gi|258512912|ref|YP_003189169.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256634815|dbj|BAI00790.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01]
 gi|256637870|dbj|BAI03838.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03]
 gi|256640924|dbj|BAI06885.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07]
 gi|256643979|dbj|BAI09933.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22]
 gi|256647034|dbj|BAI12981.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26]
 gi|256650087|dbj|BAI16027.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32]
 gi|256653078|dbj|BAI19011.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656131|dbj|BAI22057.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12]
          Length = 112

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN-TNDLLK 161
                ++        +      A       L   Y+   ++    DF DL++  T  +L 
Sbjct: 1   MAGHHVEAMIARAHAQKRFMDDAGWRYVVELYGRYQSLLREQNAADFGDLLMWPTLAMLH 60

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                   RY+  +    ++ DE QD +  Q+  ++ ++E               FAVGD
Sbjct: 61  ND----AYRYRWSRRFTAVMADEFQDVNRAQFLWLKMISE----------VSAEFFAVGD 106

Query: 222 EKQSI 226
           + QSI
Sbjct: 107 DSQSI 111


>gi|46125013|ref|XP_387060.1| hypothetical protein FG06884.1 [Gibberella zeae PH-1]
          Length = 747

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 6/159 (3%)

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             LL+  D S  +        + I++DE QD +   + +         V K     P  +
Sbjct: 133 LKLLRAVDCSRKLPLWTSAPFDIIVLDEFQDCNPETFWLAVCFLRSNNVAKG--GQPARI 190

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             +GDE+Q+IY F GA+P+ +     +       +   F+ I+L  SFR     +  +++
Sbjct: 191 VVLGDERQAIYRFRGADPRYLTLAPEMLG---PISPYPFTEIQLGNSFRLPIPTVEFINQ 247

Query: 277 VFSIPENAQGLSEDSTTTIRHRSS-RIGQVGTVQLWEQV 314
           VF   E     S+     I  R + R  +    +L   +
Sbjct: 248 VFLGGEQYISSSKQGPKPIVLRCNIRDSRAMAKKLLPLI 286


>gi|292492976|ref|YP_003528415.1| hypothetical protein Nhal_2968 [Nitrosococcus halophilus Nc4]
 gi|291581571|gb|ADE16028.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4]
          Length = 912

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 67/538 (12%), Positives = 128/538 (23%), Gaps = 81/538 (15%)

Query: 420 DLMALGR--FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
           ++ AL R  F+   E + S   +L + L    E  +              E         
Sbjct: 324 EMGALLRSPFLGEAEREFSRRALLDAYLRKTREARVSLGRLGAAAVSEGAEGAAYCCPAL 383

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             + Q     + +L            F   L       +      +E    +  +     
Sbjct: 384 GERLQQFKAELAQLPARQSPSGWARSFARWLQLLGWPGE--RSLNSEEQQAVSAWRKGVQ 441

Query: 538 RNEQNSY--SSLQELIS--ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                     SL++  +  +  +          +    V++M    A G     V+++  
Sbjct: 442 SFASLDGVVPSLKQSAAIGKFRRLLADTLFQPESPPVPVQVMGTLEAAGERFDGVWILGL 501

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              V+         +   L     +P                              L Y 
Sbjct: 502 HDGVWPPAPRPNPLLPVELQRHHRLPHASA-----------------------ERELAYA 538

Query: 654 GMTRAS-----DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
            M  A        +I+       +          ++        E       T+ I    
Sbjct: 539 RMVTARLLASAPTVIVSHPCREGDSDLRPSPLIAELPPIPPEALELASIEPYTHQIQLTA 598

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
                     P      + E    L+  Q                            G  
Sbjct: 599 MGETLADRQGPPLAKGTQVEGGTALLKAQAAC---------------PFRAFAEYRLGAQ 643

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR------KNFITSYCTKNAKLWPAKEYK 822
            LE         ++G++IH  L  ++   E ++         + +   + AK   A +  
Sbjct: 644 GLEEPSVGLAALDQGILIHSALHYLWERLEDQQILLTHTAEELQTLVAEAAKQAIAGQMA 703

Query: 823 NLLLSITRLLEN--------PMMTTAMSCDSYSEVSV-----SGKINCPKKDIIISG-RI 868
               + T              ++            +V     S  +N     +I    RI
Sbjct: 704 VRPQTFTERFTAIEQERLELLLLEWLEQDKQRPPFTVLHQEKSQPLNLGGIGLITRADRI 763

Query: 869 DQISISQQNIFIFEYKTHHHVPQEI-EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
           D++        I +YKT    P       P     QL +Y          + +V +L 
Sbjct: 764 DRL--ENGERVIIDYKTGRPDPHHWFGERPEE--PQLPLYC-----IAHKEPVVAVLF 812


>gi|329942324|ref|ZP_08291134.1| exodeoxyribonuclease V, beta subunit domain protein [Chlamydophila
           psittaci Cal10]
 gi|328815234|gb|EGF85222.1| exodeoxyribonuclease V, beta subunit domain protein [Chlamydophila
           psittaci Cal10]
          Length = 318

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 96/304 (31%), Gaps = 40/304 (13%)

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           +YV  TRA  QL I        +   N R    +             + L  +++K+   
Sbjct: 1   MYVACTRAKKQLFIPF------QTSLNSRRNTALTNYVKQEGSYASILDLAQNLSKEHPS 54

Query: 711 AYEWSTHHPENTPLEREETIKQLM----DEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
            +  ST H ++   E    +              +         + +  +L  S I+   
Sbjct: 55  LFSLSTTHRQDPSTEPIYNLTPPSTFVLSPYPTKQIFSFSSVKTMLDNEVLVDSDIENPS 114

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVI---FTLPEHKRKNFITSYCTK-NAKLWPAKEYK 822
            ++        +    G+IIHK+L+ I   F +P  K    ++ +    + + +     +
Sbjct: 115 ISSAL-----PKGRKTGIIIHKILENISPNFKIPISKILTTVSHFVKNTHLEGYEEMIAQ 169

Query: 823 NLLLSITRLL----ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI 878
            L  +I+  L     +  +         SE +         K+ +  G ID         
Sbjct: 170 KLFSTISSPLSFTSASFALKDVCPDKILSEEAFL----FSNKEQLWQGAIDLFFEYNGKY 225

Query: 879 FIFEYKTHHHVPQEIEHIPY---THIA------QLSIYEKI----LKDSYPNKSLVCLLI 925
           +I ++KT        ++       +I       Q +IY       L+       +    +
Sbjct: 226 YIIDWKTSFLGETTSKYSQENLFAYIKEHNLDYQGAIYIHAAKRFLQQFDITSDVEMGFV 285

Query: 926 YVSE 929
           ++  
Sbjct: 286 FIRG 289


>gi|30262784|ref|NP_845161.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Ames]
 gi|47528107|ref|YP_019456.1| uvrD/Rep helicase family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185630|ref|YP_028882.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Sterne]
 gi|165868630|ref|ZP_02213290.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0488]
 gi|167632054|ref|ZP_02390381.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0442]
 gi|167637753|ref|ZP_02396032.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0193]
 gi|170685260|ref|ZP_02876484.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0465]
 gi|170704544|ref|ZP_02895010.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0389]
 gi|177649244|ref|ZP_02932246.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0174]
 gi|227814374|ref|YP_002814383.1| uvrD/Rep helicase family protein [Bacillus anthracis str. CDC 684]
 gi|229122362|ref|ZP_04251576.1| UvrD/Rep helicase [Bacillus cereus 95/8201]
 gi|229600984|ref|YP_002867089.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0248]
 gi|254685377|ref|ZP_05149237.1| uvrD/Rep helicase family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254737832|ref|ZP_05195535.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742994|ref|ZP_05200679.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Kruger B]
 gi|254752147|ref|ZP_05204184.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Vollum]
 gi|254760666|ref|ZP_05212690.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Australia
           94]
 gi|30257416|gb|AAP26647.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Ames]
 gi|47503255|gb|AAT31931.1| uvrD/Rep helicase family protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179557|gb|AAT54933.1| uvrD/Rep helicase family protein [Bacillus anthracis str. Sterne]
 gi|164715356|gb|EDR20873.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0488]
 gi|167514302|gb|EDR89669.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0193]
 gi|167532352|gb|EDR94988.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0442]
 gi|170130345|gb|EDS99206.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0389]
 gi|170670620|gb|EDT21359.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0465]
 gi|172084318|gb|EDT69376.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0174]
 gi|227003245|gb|ACP12988.1| uvrD/Rep helicase family protein [Bacillus anthracis str. CDC 684]
 gi|228661211|gb|EEL16837.1| UvrD/Rep helicase [Bacillus cereus 95/8201]
 gi|229265392|gb|ACQ47029.1| uvrD/Rep helicase family protein [Bacillus anthracis str. A0248]
          Length = 689

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|288959561|ref|YP_003449902.1| double-strand break repair protein [Azospirillum sp. B510]
 gi|288911869|dbj|BAI73358.1| double-strand break repair protein [Azospirillum sp. B510]
          Length = 988

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/580 (10%), Positives = 140/580 (24%), Gaps = 64/580 (11%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
           +    L RR+A  ++       + ++   + +    +   +R   +          L   
Sbjct: 356 TPDRNLGRRVAMALARW---GILVNDSGGQPLAHTAVGTYLRLTAELAASRVHPLALLAL 412

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
            K  +    R          D  A  R +               P   F           
Sbjct: 413 AKHPMAAGGRDS-------GDFRAAARALERIVLRGPR------PAEGFDGILAALERAD 459

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR----Q 515
           R + E   E ++ +      +    ++ +     +A     H  F   L A  G     +
Sbjct: 460 RFDHEEQQEVLRGWLVDLGQRAAPFLEALAGETPLADLVRAHVAFCESLAADDGLEGKDR 519

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            +    G E    + + L+               L+           R     H  + I+
Sbjct: 520 LWRQDDGEEAARFIHDLLDAAAGFPAIPAKDYPALLD--ALMSARAVRPRYGLHPRLFIL 577

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+     +  L       +         +   +  + G+P          +  +  
Sbjct: 578 GPMEARLQHLDLTILGGLNEGTWPPAAAADPWMSRPMRREFGLPSPERLVGMSAHDFAHA 637

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
               +            V +TRA            +    S      + V  +   D  +
Sbjct: 638 CGAPE------------VVLTRA-------ARVEGTPTVPSRWLLRLETVLKALDLDGVI 678

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
           ++               +         P        + +   +I   +  P         
Sbjct: 679 EERGACWLGWARGLDEPDRVRPVSAPEPRPPLSARPRKLSVTEIETWMRDPYAIYARHAL 738

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHKRKNFITSYCTKNAK 814
            L            L+ + +D    +RG IIH  L   +   P     + +        +
Sbjct: 739 RLRA----------LDPIAADPGASDRGQIIHDTLDAFVRDHPGPLPHDALDRLIALGRE 788

Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAM----------SCDSYSEVSVSGKINCPKKDIII 864
            +      +  +          +                   +EV    +++ P     +
Sbjct: 789 RFGPLLRSHPDVWAFWWPRFERVAGWFVDLERERRPRLRPLATEVPGRLELSGPGGPFAL 848

Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           + + D+I      + + +YKT          +      QL
Sbjct: 849 TAKADRIDRGPDGLVVIDYKTGTPPSAREIEL--GFAPQL 886


>gi|255523337|ref|ZP_05390307.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7]
 gi|296188270|ref|ZP_06856662.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7]
 gi|255512991|gb|EET89261.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7]
 gi|296047396|gb|EFG86838.1| ATP-dependent nuclease subunit B [Clostridium carboxidivorans P7]
          Length = 1148

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 80/684 (11%), Positives = 187/684 (27%), Gaps = 143/684 (20%)

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
           +    + KDI V+     D      L   +  +Y I    + +  + D+  I  +M++  
Sbjct: 332 RDNGFRFKDIAVI---SGDLDGYESLFSAIFKEYDIPYFIDKKRKINDNPIIMLIMSVVE 388

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF----- 481
            +       +    LK+ L   +++D+  I               K              
Sbjct: 389 ILSQNWSYEAVFRYLKTGLLELTKEDMDLIENYVLSNGIKGNAWIKEEPWDFGLSYSFEK 448

Query: 482 -------QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ------------------- 515
                  + ++  I+ +               I G KKGR                    
Sbjct: 449 KEISDYEKEILNKINLIRDKI-REPIIKLSKDIKGRKKGRAICEGLYNFLCNIKLDEKVA 507

Query: 516 ---QFISRFGNEVIDV--------LDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKR 563
              ++    G              + E L+  +        ++      L +        
Sbjct: 508 AWIEYFKENGELDKANEYSQIWNIVMEVLDQIVEVMGEETLAIGTFSQVLSKGFDEYEIG 567

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 ++V I +V   K  +  V+++V     VF            +     G+     
Sbjct: 568 VIPPALDQVLIGSVTRLKSHDVSVLYIVGVNDGVFP-----------AALAQEGVLTDSD 616

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
           +   +   +        ++   E   L+Y  +T  S  L +         K         
Sbjct: 617 REILKGRGIEIAKDTRSRA--FEEQFLVYTTLTTVSKYLRLSYSIADEGGKTKRPSIVIG 674

Query: 684 MVYDSFHNDERVKK-IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            +   F N E     I++ N   K +++    +T +   + ++++           + + 
Sbjct: 675 RIKKIFSNVEEQSNLIEIQNDEEKLKYVTGPRATFNKLISNIKKDSNGYITPMWLDVYRW 734

Query: 743 L---------------------------FSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                                        + ++        ++ S ++          + 
Sbjct: 735 YNKSDKWNKKLENIFNGFSYSNEAEIMDTNRVRKLYGRHLNISVSRLEKFVNCPFSYFIQ 794

Query: 776 -DNQTFNR----------GLIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLWPAKEY 821
                  R          G  +H +LQV  +  + +    K   + +C +       +  
Sbjct: 795 YGLNAKERKVYKLSSPDLGSFMHNVLQVFSSKLKEENLSWKEIDSEWCEREVSEIVDEIL 854

Query: 822 KNLLLSI--------------TRLLENPMMTTAMSCDSYS--------EVSV--SGKINC 857
           +++  S+               R+L   +    ++             E+S   SG    
Sbjct: 855 ESMPSSVFNSSKRYKHITNNAKRILNRSV--WLITEHMKRGGFEPSGYELSFGNSGDFPP 912

Query: 858 ------PKKDIIISGRIDQIS----ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                   + + + GR+D++          + I +YK+      ++  + Y    QL IY
Sbjct: 913 ISLQLHSGETVSLIGRVDRVDSMNSEENTYLRIVDYKSG-TKEFKLSDVYYGLQMQLLIY 971

Query: 908 EKI----LKDSYPNKSLVCLLIYV 927
                  L+      ++   ++Y 
Sbjct: 972 LDAMLTELEKEMNKDAIPGGILYF 995


>gi|304403944|ref|ZP_07385606.1| ATP-dependent nuclease subunit B [Paenibacillus curdlanolyticus YK9]
 gi|304346922|gb|EFM12754.1| ATP-dependent nuclease subunit B [Paenibacillus curdlanolyticus YK9]
          Length = 1207

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/674 (8%), Positives = 175/674 (25%), Gaps = 145/674 (21%)

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            +    ++   + +D+ ++VR   D    T     L  DY+I    + +   + H  ++ +
Sbjct: 347  MVRRAREEGYRWRDMAIMVRNATD---YTDYLTELMQDYQIPYFLDQKRTASHHPLVEFI 403

Query: 422  MALGRFILSQEDDLSFVCMLKSPLFNFSEDD-----------IFKICTQRHETETVYEYI 470
             +    +L      +    +K+ L    E++           +             +  I
Sbjct: 404  RSSLETVLHGWKYDAVFRCMKTELLFPGENEASRLTRESFDLLENYALAAGIDGWRWLEI 463

Query: 471  QKFANCGISKFQHV---------------------------IKYIHELIHIAQFCSPHDF 503
            + +        +                              +    L       +  + 
Sbjct: 464  KSWRPLVRESLEQAEAAEATRTELERFQVVLEAREAIVAPLRQLSDALQGARNVRTMCEA 523

Query: 504  FTLILGAKKGRQQF--------------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
              ++L       +                +R   ++ D +   L+  +    +   S + 
Sbjct: 524  LYVLLDQAGAADRLERWSRADAEAGRVRQARSHRQLWDSVMALLDQLVEMTGDEPLSPEL 583

Query: 550  LISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                +     ++K A      ++V I +V   +  E  V +++     V   +       
Sbjct: 584  FAGMITTGLDSLKLASVPPSLDQVLIGSVDRTRSGEVKVCYVLGANDGVLPMRMQ----- 638

Query: 609  MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH- 667
                  + G+     +    +  +       +     +   ++Y  ++  S  L +    
Sbjct: 639  ------EDGVLTEQERDMLADAGMQLAPSVRR--RLLDERFMIYNALSAPSRHLWVSYAM 690

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
            ++   +          +        ER        +++ +E +++    H      + + 
Sbjct: 691  ADEEGKSLHPSELIRHLRAMFPSLAERGIYSDPLAAMSTEEQLSFATRPHAALPHLIAKL 750

Query: 728  ETIKQLMDEQKIPKKLFSPI--KNDINEPYILNPSTIDTKGKTNLESLLS---------- 775
               +Q    Q +   +FS    + +  E      +++D + +       +          
Sbjct: 751  REWRQGAAIQPLWWDVFSWYAIRPEWQEALRRRTASLDYRNEEPPLPPETATMLYGERLR 810

Query: 776  ------------------------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
                                            +  + G + H  L  +      +     
Sbjct: 811  ASVSRMERFVSCPFQHFASYGLRLQERAVYRIEAPDIGQLFHAALSRVADKFGRRWGAVT 870

Query: 806  TSYCTKNAKLWPAKEYKNLLLSIT-----RLLENPMMTTA-------MSCDSYS------ 847
                   A     +    L   I             +          +   +        
Sbjct: 871  DEQAAAAASEVVDELAPRLQSEILLSSGRHRFMLGRLKAIISQAAIMLGDHARRASFHPV 930

Query: 848  --EVSV--SGKIN------CPKKDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEI 893
              E+     G +           ++ + GRID++  + ++  +   + +YK+       +
Sbjct: 931  GLEIDFGPEGTLPSLVVPLPDGGEVELVGRIDRVDAAETEDGLLLRVLDYKSSAT-SLRL 989

Query: 894  EHIPYTHIAQLSIY 907
            E + +    Q+  Y
Sbjct: 990  EEVAFGLSLQMLAY 1003


>gi|229545193|ref|ZP_04433918.1| DNA helicase II [Enterococcus faecalis TX1322]
 gi|229309738|gb|EEN75725.1| DNA helicase II [Enterococcus faecalis TX1322]
          Length = 515

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 59/195 (30%), Gaps = 23/195 (11%)

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               +L++   +   +     +   I +DE QD+      +   +     +         
Sbjct: 146 LAKKVLEQSTAA---QEYFKSKYTMIFLDEYQDSDTDMHNLFMYIKNVLLI--------- 193

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
            LF VGD KQ+IY + GA+     + +    +R            L  +FRS  +I+   
Sbjct: 194 DLFIVGDGKQAIYLWRGAQRNIFNQLENEGMQRFE----------LVTNFRSHFEIVNYA 243

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           + +       +       T + H  +        +L E  +   +              D
Sbjct: 244 N-LMHNASQFRDDYSKEVTHVVHCRTNDYVSSINELCESNIVDKNKNITIIANINNDAKD 302

Query: 335 SLPQESSASILARRI 349
                ++       I
Sbjct: 303 ISDNLNAQGFNFVFI 317


>gi|116873699|ref|YP_850480.1| ATP-dependent nuclease, subunit B [Listeria welshimeri serovar 6b
            str. SLCC5334]
 gi|123466556|sp|A0AL19|ADDB_LISW6 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|116742577|emb|CAK21701.1| ATP-dependent nuclease, subunit B [Listeria welshimeri serovar 6b
            str. SLCC5334]
          Length = 1157

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 75/732 (10%), Positives = 192/732 (26%), Gaps = 141/732 (19%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       IA  I  +      + +         D  VL     ++  I       +
Sbjct: 307  QANNRRAEIEGIAREIRQLTLKGYRYQDMAILTRNISDYDVLCETVMESFDIPIFIDKKR 366

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRF------------------------------ 427
               K   +   R  +   L       + +                               
Sbjct: 367  AMAKHPFIEFIRSSIDAILFNWKYEPIFQAVKTEFFFDVSENTSIMRRKADILENYVLEN 426

Query: 428  -ILSQEDDLSFVCMLKSPLFNFSEDDI------FKICTQRHETETVYEYIQKFANCGISK 480
             I ++         +   +   S + +       +     +E   +           ++K
Sbjct: 427  GIQNKWKWEKEGDWIYRKIRGLSTNLLPQTDEELETQAIINEMRNLIVEPLSILENNLAK 486

Query: 481  FQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             +        ++  +   +     + +          +  ++R   +    + E L+  +
Sbjct: 487  ARTGTEFAMALYHFLEQVKAVEHLESWRQTAEENGYLE--LAREHEQAWSSVSELLDEFV 544

Query: 538  RNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                     +      +              + +++ +  +  AK L+  V+F +     
Sbjct: 545  EVLGEESLDINSFAEIVATGLDALEFSLLPPSLDQIVLSDMENAKLLDMKVIFAIGMNDG 604

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +   +   K  +     D     +    S  + +  +            E + L Y  ++
Sbjct: 605  IMPLRQKDKGILSDQDRDS----LRAENSNLKPSAKN---------NIGEEDLLAYKIIS 651

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
              SD+L +   +     K  ++  +   +   F        +   + ++ +E  +Y  S 
Sbjct: 652  LPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFKKLNEEVYLTDPSLLSDEEQSSYIRSK 711

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI-------------------- 756
                     + +  K+      +    ++    D  E  +                    
Sbjct: 712  QATLGLLTSQLQMYKRGYPLSNVWWDAYNGYFEDTKESKVAKQVLSSLYYENKTKALHET 771

Query: 757  -----------LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIF 794
                        + S ++                  E      Q  + G I H  ++ I 
Sbjct: 772  TAKNLFGENIHASVSRMEKFFSCEFQHFAQYGLKLEERAHFKLQAVDMGEIFHGAMEWIS 831

Query: 795  T------------LPEHKRKNFITS--YCT---KNAKLWPAKEYK-------NLLLSITR 830
                           E  R+    +  +     ++  L  +K  +        ++   T 
Sbjct: 832  AELKRNNQDWGNLTEEECRQMAKLAMTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATT 891

Query: 831  LLENPMMTTAMSCDSYSEVSV-------SGKINCPKK-DIIISGRIDQ--ISISQQN--I 878
            +L     ++A       EV         S KI    + ++++ GRID+  ++       +
Sbjct: 892  VLNEQAKSSAFRPIGL-EVDFGLKGDIPSLKIPLKSESELLLQGRIDRIDVAEQDDRTFL 950

Query: 879  FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL--LIYVSEPKVF 933
             I +YK+  H    +  + Y    Q+  Y  I+         K+      L +    +  
Sbjct: 951  RIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQFV 1009

Query: 934  IIPQNKLNKAFA 945
               +   ++A A
Sbjct: 1010 QADKELSDEAIA 1021


>gi|296131196|ref|YP_003638446.1| NERD domain protein [Cellulomonas flavigena DSM 20109]
 gi|296023011|gb|ADG76247.1| NERD domain protein [Cellulomonas flavigena DSM 20109]
          Length = 734

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 60/198 (30%), Gaps = 30/198 (15%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
            + +        +  +  +    +   L   Y++  +   V DF D I      L++   
Sbjct: 429 RWEEYAALPRLGRRHRLGMQQRRVVWDLYEAYDKELRDRGVHDFADQIALAEAELRREP- 487

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
                  + +    +++DE QD + +   ++ +L  D   G            +GD +Q+
Sbjct: 488 -------LAERYTAVVVDEAQDLTCVMIRMLHALVGDAPDG---------FTLIGDGQQT 531

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY                                L +++R+T +IL     +    E A 
Sbjct: 532 IYPGG-------------FTLAEAGVSVAGRGTVLDVNYRNTREILQFASLLVKDDEYAD 578

Query: 286 GLSEDSTTTIRHRSSRIG 303
                +         R G
Sbjct: 579 IEGATARGDRPTEVPRRG 596


>gi|330468532|ref|YP_004406275.1| RecB family exonuclease [Verrucosispora maris AB-18-032]
 gi|328811503|gb|AEB45675.1| RecB family exonuclease [Verrucosispora maris AB-18-032]
          Length = 320

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 67/228 (29%), Gaps = 26/228 (11%)

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF--------NRGLII 786
            +  I ++  +           L+PS         L                   RG ++
Sbjct: 19  ADPVITQQAPTSTPLPPTVRASLSPSRAADFKTCPLLYRFRSIDRLPERPTVEQARGTLV 78

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL--------SITRLLENP--M 836
           H +L+ +F LP   R                  E   L               L +   +
Sbjct: 79  HAVLERLFDLPAAGRTPQAAGDLVAPQWDRLVTEQPELAGLFTDDGTVDAVEFLRSAATL 138

Query: 837 MTTAMS---CDSYSEVSVSGKINCP-KKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQ 891
           +    S               I+    ++++I G +D++ ++      + +YKT     +
Sbjct: 139 LEGYFSVEDPRRLEPAERESLISAVIDEELLIRGYLDRLDVAPDGALRVVDYKTGGAPRE 198

Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
             E      + QL  Y  +L  +      V  L+Y+ + +V     + 
Sbjct: 199 AFEARA---LFQLKFYALVLWRTRGVVPRVLRLLYLRDAEVCDYSPDA 243


>gi|325286151|ref|YP_004261941.1| hypothetical protein Celly_1242 [Cellulophaga lytica DSM 7489]
 gi|324321605|gb|ADY29070.1| hypothetical protein Celly_1242 [Cellulophaga lytica DSM 7489]
          Length = 910

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 61/416 (14%), Positives = 123/416 (29%), Gaps = 66/416 (15%)

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           N   SL  L  EL                 ++IM +  ++ L+   V L      +    
Sbjct: 477 NDLQSLFGLYKEL--LSSETLDFKGEPLKGLQIMGMLESRNLDFETVLLTSVNEGILPSG 534

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                 I   +    G+P +      ++ + +                  Y  + RA + 
Sbjct: 535 KSNNSFIPFDIKKMYGLPTYK----EKDAVYTYH---------------FYRLLQRAKNI 575

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            ++        E     R    ++ DS  ++   + I                    P+ 
Sbjct: 576 HLVYNTEPDVLEGGEVSRLIRQLLADSNISNYITETIAFPE-------------IKSPKK 622

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
             +  ++    +   + I    FSP          L+    +      LE +        
Sbjct: 623 KVVSIQKDAHLMELIKGIAAYGFSPTSLSNYIRNPLDFYKKNILKINELEEVEETVAANT 682

Query: 782 RGLIIHKLLQVI------FTLPEHKRKNFI-------TSYCTKNAKLWPAKEYKNLLLS- 827
            G I+H+ L  +        L   + K  +         +   + K    +E KNL+   
Sbjct: 683 FGTIVHETLDELYQPFVNTFLEAEQLKALLPKINSTVRKHFAIHYKNVSLEEGKNLIAFN 742

Query: 828 -ITRLLENPMMTTAMSCDSYS------EVSVSGKINCPKKDIIIS--GRIDQISISQQNI 878
            + + +EN +     S   +       E+S+   IN P  +  +   G++D+I      +
Sbjct: 743 VVLKYVENFIKLEIESAKKHKIKIIGLELSLKTAINVPGVNFPVHIKGKLDRIDEIDGVL 802

Query: 879 FIFEYKTHHHVPQEI-----EHIPYTH----IAQLSIYEKILKDSYPNKSLVCLLI 925
            + +YKT     + +     E I   +      QL  Y  +     P   +   + 
Sbjct: 803 RVIDYKTGKVEQRNLNLSNWEDIVEEYDKSKAFQLLCYAYMYNHLVPVDKVEAGIF 858


>gi|187777518|ref|ZP_02993991.1| hypothetical protein CLOSPO_01109 [Clostridium sporogenes ATCC 15579]
 gi|187774446|gb|EDU38248.1| hypothetical protein CLOSPO_01109 [Clostridium sporogenes ATCC 15579]
          Length = 1147

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 74/702 (10%), Positives = 193/702 (27%), Gaps = 145/702 (20%)

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
            + +  + KDI V+     D      +   +   Y I    + +  + ++  I  +++   
Sbjct: 332  RDKGCRFKDIAVIT---GDLEGYENIISSVFLQYNIPFFIDKKREINNNPIIVLILSALE 388

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANCGISKF-- 481
             +       S    LK+ L + + ++   +             +   + + +   S +  
Sbjct: 389  VLSKNWTYESVFRYLKTGLLDINNEEMDILENYVLANGIKGYQWTNDKPWEHKSFSNYEL 448

Query: 482  -----QHVIKYIHELIHIA----------------------------QFCSPHDFFTLIL 508
                 + ++  I+++ + A                               +  D    ++
Sbjct: 449  EEQVEKELLDKINDIRYEAMDPIVSLNKSFKSKDRAKEFCEVLYEFLCSINLPDKIQNMI 508

Query: 509  GAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
               K   +   +   N++ +++ E L+           SL+E    L+      +     
Sbjct: 509  ENFKVEGEVEKASEYNQIWNIVMEVLDQIAEVIGEEKISLKEFFKILQTGFSEYEIGLIP 568

Query: 568  NH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
               ++V + ++   +     ++++V     +F            +   + GI     +  
Sbjct: 569  PTLDQVIVGSITRLRSHNINILYIVGVNDGIFP-----------APLKEEGILSDEDRQF 617

Query: 627  SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                 +         +   E   L+Y  +T  S  L +         K          + 
Sbjct: 618  LGEKGLEIAKDTKSIA--FEEQFLVYSTLTTPSKYLRLSYPIADGEGKTLRPSIIISRIK 675

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--EQKIPKKLF 744
              F N      I   N   ++                  R++     +D       K   
Sbjct: 676  KIFTNICEENDIVRLNGEEEELKNISSAKPTFNYLISNLRKDVEGVKIDNIWGDTYKWYL 735

Query: 745  SP---------------------------IKNDINEPYILNPSTIDTKGKTNLESLLS-D 776
                                         I+N   +P  ++ S ++   +      +   
Sbjct: 736  ENEFWIEKLNRLIKGFDYTNQSKYIETKKIRNLYGKPLKISVSRVEKFSQCPFAYFVQYG 795

Query: 777  NQTFNR----------GLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKN 823
             +  +R          G+ +H +L+      E    +      ++  +       +E  N
Sbjct: 796  LKAKDRKIFNLSYPDLGIFMHSILEKFSHELEKEGLEWNTMDLNWAEEEIDKLINEELDN 855

Query: 824  --------------LLLSITRLLENPMMTTAMSCDSYS--------EVSVSGK------- 854
                          +  S+ ++L+  +    +              E+S           
Sbjct: 856  KSLDILNSSKRYEYVTKSVKKILKRSI--WLIGEHIKRGNFKPSYYELSFDVDGDYPPIA 913

Query: 855  INCPKKDII-ISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
            +     +++ + GR+D++         +  I +YK+      ++  + Y    QL IY  
Sbjct: 914  MELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSG-TKEFKLSDVYYGLQLQLLIYLD 972

Query: 910  I-LKDSYPNKSLV---CLLIYVSEPK-----VFIIPQNKLNK 942
              L +      +      L+Y+            I   ++ K
Sbjct: 973  AILTELAERSGVNGEPGALLYLKLDDPIVKNTVDISDEEIEK 1014


>gi|196041728|ref|ZP_03109019.1| uvrD/Rep helicase family protein [Bacillus cereus NVH0597-99]
 gi|196027497|gb|EDX66113.1| uvrD/Rep helicase family protein [Bacillus cereus NVH0597-99]
          Length = 689

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|157738276|ref|YP_001490960.1| hypothetical protein Abu_2073 [Arcobacter butzleri RM4018]
 gi|157700130|gb|ABV68290.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
          Length = 783

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/414 (12%), Positives = 116/414 (28%), Gaps = 57/414 (13%)

Query: 518 ISRFGNEVIDVLDEFLNFT-LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
                 E+I+  DE L    +    N    L + + ++     +       N   + ++ 
Sbjct: 363 QKEKNIELIEKYDELLYKLNITLFSNENKILLKDVYKIFLQKLSSITLDDINSGTITVLG 422

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +   + +    V + D          +K   +   L     +P    +   +      LI
Sbjct: 423 LLETRAVSFDTVIICDFNESYIPKISVKDKFLSTRLKQLANLPTQFDRESLQKYYYKRLI 482

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                                +S  + I   ++ +N+        ++    +  ND   K
Sbjct: 483 S--------------------SSKNVFISYVNSETNQISRFANELFEKNIVTDTNDSFYK 522

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
            I   N               + +   + + +  K +         L    +  +     
Sbjct: 523 HILYDN-----------HKISYFDEDIISKIDLTKFIWSATSFKNFLECKRRFYLQYILK 571

Query: 757 LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
           +N  TI               + +  G IIH +L+          KN I     K     
Sbjct: 572 INEHTISL-----------KPKGYELGDIIHSILE---DYYSKDNKNSIEELFLKYKSSN 617

Query: 817 P--AKEYKNLLLSITRL--LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
           P    + +     +      +   +           + +  + NC   +I I G ID++ 
Sbjct: 618 PFLTLDLEVWKKKLLNFYEFDKQRLKN------RKIIMIEKEFNCSFNNINIKGIIDRVD 671

Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHI-AQLSIYEKILKDSYPNKSLVCLLI 925
             + N  + +YKT   +  +        +  QL  Y   L+  +   ++     
Sbjct: 672 KFEDNYEVIDYKTSSTLNVDTLKTYEKSVDFQLEFYYIALQQLFKTPNIKAFYY 725


>gi|319406428|emb|CBI80068.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 1043

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 72/615 (11%), Positives = 165/615 (26%), Gaps = 62/615 (10%)

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
           T  +  + ++   +I A      I      +   +         +D         +   +
Sbjct: 346 TDLWAQITRDDYENICADW--SLIEAPNEREEALAISLALRNTIEDPKKTAALVTNDRNL 403

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                     + I    +    L   L    L  L   I    D ++F+ +LK PL    
Sbjct: 404 ARRVAAELQRFGIEANDSGEIPLAQTLPATLLRLLLENIFKPGDPVAFLSLLKHPLTTLE 463

Query: 450 EDDIFKICTQR-----------------HETETVYEYIQKFANCGISKFQHVIKYIHELI 492
            +  +                          +    ++Q   +     +   ++ I E  
Sbjct: 464 YNHNYLREMAENFELLVLRGNSCRINLCECDQFFKTWMQTHFHKISKSYMPDLQKIEEAK 523

Query: 493 HIAQFC--SPHDFFTLILGAKKGRQQFISRFGNEVIDVL--DEFLNFTLRNEQNSYSSLQ 548
            +      +     TLI   ++      +    EV +    D   +     +  +  +L 
Sbjct: 524 FLCHLLVRAVEPLVTLIKQERECSINEAAIATVEVFENFGRDADNSLAHLYQNEAGKALA 583

Query: 549 ELISELEQYPPTIKRAHSANH---NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             + EL      +K          + +      +      P +F+  T        +   
Sbjct: 584 TFLRELVSDQSGLKFHLYEWPALFSALMATRSVSPSLGGHPRLFIWGTLESRLQTVNTVV 643

Query: 606 MHIMPSL----NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           +  +              +  P   +      +    L     +    +  V M+RA+  
Sbjct: 644 IGSLNEGSWPIKTHNDAFLSRPMKMTLTLEPPEQRIGLSAHDFQWAMGMDQVIMSRATRV 703

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
                    ++      R    +         +    +    ++  + +    S    E 
Sbjct: 704 ---------NHTPSVPSRWLQRLETVIGKQVWKQICTRGELFLHWAKMLDNTKSIIPAER 754

Query: 722 T-PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             P+   +   +     +I      P      +   L P          L+ L+ D  + 
Sbjct: 755 PCPVPPLDMRPRHFSVTEIETLRHDPYAIYAKKILRLKP----------LKPLIHDPCSA 804

Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
            RG + H +L    T  +++    +        +    K      + I   L    +   
Sbjct: 805 ERGTLYHAILAAFCTQIKNQNATNMLEILLTIGRKEFDKLNLPPDIEIIWWLNFENLAPF 864

Query: 841 M--------SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ 891
           +        S   Y+EV ++      +  + +SGR D++ I     + I ++KT      
Sbjct: 865 LIQWEQSLGSRKRYAEV-IAQNTLIGETGVTLSGRADRLDILPDKTVEIIDFKTSTPPSS 923

Query: 892 EIEHIPYTHIAQLSI 906
               +      QL++
Sbjct: 924 T--QVINLFSPQLAL 936


>gi|228934086|ref|ZP_04096927.1| UvrD/Rep helicase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228825600|gb|EEM71392.1| UvrD/Rep helicase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 689

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|85057365|ref|YP_456281.1| UvrD helicase [Aster yellows witches'-broom phytoplasma AYWB]
 gi|84789470|gb|ABC65202.1| UvrD helicase [Aster yellows witches'-broom phytoplasma AYWB]
          Length = 1038

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 30/154 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINT---NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           L   Y E      ++ F+ L+I T    + +++ +   + R         + IDE QD +
Sbjct: 185 LLNLYYEKLNYYNLITFDGLLIETSDFIEFVERNNGLIYNRP--------VFIDEFQDLN 236

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              + +I+ L           + P +L+  GD  Q+IYS  G+  + +    +       
Sbjct: 237 YFYYFIIKELL---------FNKPNSLYCFGDYTQNIYSSFGSSERILELFVKDF----- 282

Query: 250 NAGQKFSIIELPLSFRSTA-DILTVVDKVFSIPE 282
                     L +++RS   +I+   +++    E
Sbjct: 283 ----MPQKHFLNVNYRSKGINIVKAANELIDNKE 312


>gi|228927864|ref|ZP_04090912.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228831927|gb|EEM77516.1| UvrD/Rep helicase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 689

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|91784004|ref|YP_559210.1| hypothetical protein Bxe_A1801 [Burkholderia xenovorans LB400]
 gi|91687958|gb|ABE31158.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 625

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 81/593 (13%), Positives = 157/593 (26%), Gaps = 125/593 (21%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK----------------NCVLD 148
           ++  + R+ ++  +  + T A   LA+ + A  E                       +L 
Sbjct: 117 EKIAERREHYDRPRTQERTKA--RLAQEI-ADLEAELDAIGGVGKFVYGNGSSYAEGILG 173

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            +D++      +    +   +  K      +I +DE QDT+    E +R +  D      
Sbjct: 174 HDDILKLAPACVASHPLLRLLVAK---RFPYIFVDESQDTNPEVVEALRQIAGD------ 224

Query: 209 THSSPRTLFA--VGDEKQSIY-SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                  L     GD  Q IY S  GA P      +                +  P +FR
Sbjct: 225 ----HPDLCVGFFGDPMQKIYMSGAGAVPLNDGWAE----------------VTKPENFR 264

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
               +L V++ +                          + G  +L +            Q
Sbjct: 265 CPTSVLGVINAI--------------------------RAGGDRLEQVRGRTVTVDGIQQ 298

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
             + +S    LP +   S     +   ++  + T         R    + +LVLV +   
Sbjct: 299 PVAGSSNLFVLPADGERSAHLAAVRRWLA--VETGDDLWLSDMREGDVR-LLVLVHRMAA 355

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL--GRFILSQEDDLSFVCMLKS 443
           T L         ND     +       T          +          D  + + +L+S
Sbjct: 356 TRLGFPNLYAALNDRAPMSLSEGLTDGTAWPLRPVAQHILPLVVAARAGDQFTVMSVLRS 415

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                  + +                  +     +   Q  +  +  L+      +  D 
Sbjct: 416 ESPKLEPERL----------------RGQATAPVLRALQQALDGLVALLAEGSQATVRDV 459

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
            TL+        +   RFG          ++       +  S  + + + L      +  
Sbjct: 460 LTLV--RDSELLRLDDRFG----------VHLVAEPVDDGSSGFENVQAYLACGVDELWA 507

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                  E    T H  KG +   V +V                                
Sbjct: 508 YRRYFTEESPFATHHGVKGAQFERVLVV---------------IDDDEAGFRQYSYGKYF 552

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                +      I   ++S  +   RL YV  +RA   L +   +      ++
Sbjct: 553 GYVPLSESDEARIASDEESVLDRTRRLFYVCCSRAVKDLAVVVFAPDVTAART 605


>gi|228477218|ref|ZP_04061856.1| ATP-dependent nuclease subunit B [Streptococcus salivarius SK126]
 gi|228251237|gb|EEK10408.1| ATP-dependent nuclease subunit B [Streptococcus salivarius SK126]
          Length = 1130

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 73/659 (11%), Positives = 174/659 (26%), Gaps = 85/659 (12%)

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
           + Q          + +  +      ++A +I  ++              + KDILVL+  
Sbjct: 309 DEQLTDQDKQALQVWEVVNQKEEVAQVAKSIRQLLADGK----------RYKDILVLL-- 356

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
             D          +   + I         ++ H  ++ + +L R           + ++K
Sbjct: 357 -GDEESYKLQVGQIFRKFDIPYYFGKEESMSSHPLVQFVDSLERIKRYNYRAEDLLNLVK 415

Query: 443 SPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           S L+  F+++D+       +  +    +         S+ ++ +  ++ L          
Sbjct: 416 SGLYGGFAQEDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNTLRSQLVEPLDK 475

Query: 502 DFFTLILGAKKGRQQFI-----------------------SRFGNEVIDVLDEFLNFTLR 538
              +         ++ +                            +V     + L     
Sbjct: 476 LLNSRKQKGSSLLKKLVVFLEAVQVPSQMASLTAKASEAEKEQNEQVWKAFTQLLEQVET 535

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                  S+ + +S L                + V +      +   +P VF +      
Sbjct: 536 IFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAPYVFALGMTQSH 595

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG--- 654
           F      K  +               +S       +    H    +         V    
Sbjct: 596 FPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQP 655

Query: 655 ---------MTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                    M+    +L+           N    K      + D++      +       
Sbjct: 656 QILNETQDDMSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDAD 715

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
           L         +A  +     +   +     I  +   +   + +   +     EP  L+ 
Sbjct: 716 LDKETQTFWSVAVRYLRKRLDKDQVLIPNVIDDVTTTKVDDQVMQ--LVFPGEEPLKLSA 773

Query: 760 STIDTKGK----------TNLESLLS-DNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITS 807
           S + T               LE L S      + G  +H++ +  +         + +  
Sbjct: 774 SALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSSENFDDKLEK 833

Query: 808 YCTK------NAKLWPAKEYKNLLLSITRLLE---NPMMTTAMSCDSYSEVSVSGKINCP 858
              +         L+   +   L   I   +      ++    +     E     K +  
Sbjct: 834 AIAQTNQEQPFELLYTEDQESRLSRQILEDIARSTASVLRDNAAVKVERE---EAKFDLL 890

Query: 859 KKD-IIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
             + I I+G ID++         + +YK+  +V  +I+        QL  Y + L+ +Y
Sbjct: 891 LANSIKITGIIDRVDRLTDGALGVVDYKSGKNVF-DIQKFYNGLSPQLVTYLEALRQTY 948


>gi|213400873|gb|ACJ47085.1| hypothetical protein [Wolbachia endosymbiont of Tribolium confusum]
          Length = 155

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 13/165 (7%)

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P      ++    +    G+ +   +L  SFRS  ++L +VD++F+     +     + 
Sbjct: 1   NPHLFNYMQQYFHTKTG--GRDWISCQLEKSFRSIPEVLMLVDRIFNN---FREEISFND 55

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             I+H   R    G +++W  + S  + +    Q   T   D +  +    +LA+ IA  
Sbjct: 56  NEIKHIPHRENDQGYIEIWPLLPSYKEEEHQALQ--LTQRKDYVVTD---RLLAQAIACR 110

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           I N +    I    K R I+ +DI++LVR+R    L+ ++   LK
Sbjct: 111 IHNWLNEGCIL-VAKDRHIEPRDIMILVRQRN--ALVDYIISELK 152


>gi|108562783|ref|YP_627099.1| hypothetical protein HPAG1_0358 [Helicobacter pylori HPAG1]
 gi|107836556|gb|ABF84425.1| hypothetical protein HPAG1_0358 [Helicobacter pylori HPAG1]
          Length = 777

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/448 (11%), Positives = 119/448 (26%), Gaps = 78/448 (17%)

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTI 561
           +L  +      + +  ++    L E  +  +       +     SL++L+    Q     
Sbjct: 333 LLDLENLTLALLEQQSSKEKAPLKEAHSQIMHQYHLLKDTLKNYSLKDLLHLYLQEFEAN 392

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            R   ++  ++R+M     +G++   + +VD             + +  +L     +P  
Sbjct: 393 FRLDDSSGGKIRVMDTLETRGMQFDKIVIVDFNETCVPSLKDCDLFLNSALRKSLNLPTL 452

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           + +   + +    L K+ K         L Y+                    +    +  
Sbjct: 453 LDKKNLQKHYYYQLFKNSK------EITLSYI--------------------ESETSKAS 486

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             ++    H +               ++   E     P++                 +  
Sbjct: 487 NMLLELDLHIEPIKDAYTFFAPSPLKDYQEEEIKAAIPKDFSF----------SASSLNA 536

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL--QVIFTLPEH 799
            L    +   +       S  D                   G ++H+LL          +
Sbjct: 537 FLTCKCRFYYHYMKRFKESPKDESNS-------------AVGSLLHELLKEAYEKDKNPY 583

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
             +  +         + P +    L+    I                    + +      
Sbjct: 584 ALEERLIWLLETRKNITPKERLDTLITLKKIQAFYLKE--KERFKAKIKI-LDLEKSFET 640

Query: 858 PKKDIIISGRIDQISIS-QQNIFIFEYKT------H--------HHVPQEIEHIPYTHIA 902
             + +   GRID+I  +    I + +YK                   P EI  I   +  
Sbjct: 641 TIQGVAFKGRIDRIDKTADNEIILLDYKFKNDLKLDNMSEKQRKSLSPIEIAQISTDY-- 698

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEP 930
           Q++IY   LK+     S+      + + 
Sbjct: 699 QMAIYAHALKNLGYKGSIKAFFYDLRKG 726


>gi|196043231|ref|ZP_03110469.1| uvrD/Rep helicase family protein [Bacillus cereus 03BB108]
 gi|196025540|gb|EDX64209.1| uvrD/Rep helicase family protein [Bacillus cereus 03BB108]
          Length = 689

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|52142701|ref|YP_084128.1| UvrD/Rep helicase family protein [Bacillus cereus E33L]
 gi|51976170|gb|AAU17720.1| UvrD/Rep helicase family protein [Bacillus cereus E33L]
          Length = 689

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|324998799|ref|ZP_08119911.1| RecB family exonuclease [Pseudonocardia sp. P1]
          Length = 251

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 68/206 (33%), Gaps = 36/206 (17%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRK-----NFITSYCTKNAKLWP---------- 817
               ++   RG ++H +L+ +                   +   +A L            
Sbjct: 1   PEPPSRAQVRGTLVHAVLERLSRCRRPSAPGGGTCPARPCWDELSAGLGDAVTGGPLFTG 60

Query: 818 --AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS-------VSGKINCPKKDIIISGRI 868
               E    L S   LL+        + +  +EV        V   ++     + + G +
Sbjct: 61  PGDPELAVWLDSAAGLLDT-----YFTLEDPAEVPAVAVEERVETSLDGADGVVPLRGIV 115

Query: 869 DQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           D++  S    + + +YKT     +  E      + QL  Y   +  +         L+Y+
Sbjct: 116 DRLDESPDGTLRVVDYKTGATPGEGFEGSV---LFQLKFYALTVLLTRGRVPDELRLLYL 172

Query: 928 SEPK--VFIIPQNKLNKAFAEISTKI 951
           S+     +   +++L++ FA +   +
Sbjct: 173 SDGTALTYRPDEDELHR-FARLLDAV 197


>gi|114762247|ref|ZP_01441715.1| hypothetical protein 1100011001331_R2601_14950 [Pelagibaca
           bermudensis HTCC2601]
 gi|114545271|gb|EAU48274.1| hypothetical protein R2601_14950 [Roseovarius sp. HTCC2601]
          Length = 976

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/591 (9%), Positives = 143/591 (24%), Gaps = 60/591 (10%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            ++T       + + I    +    L      + L  +           + + +LK PL 
Sbjct: 356 RMLTRQVTAALDRWNILPDDSAGTPLQLSPPGRFLRHVSTLFQHDLTAEALLTLLKHPLC 415

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA-------QFCS 499
           +   D    +   R     +      +    + +   V   +    +             
Sbjct: 416 HSGHDRGEHLRATRELELHIRNKSWPYPRPELIRAWGVAAEMESWANWVADSFCQPPRRG 475

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP- 558
                  I       +   +    E  ++  E      R             ++L+    
Sbjct: 476 KRALSDWIEDHIARAEAIAAGPQGEDSELWKEAAGRKARAVVEGLRDEAGFGTDLDARDY 535

Query: 559 ---------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
                        R   A H  + I     A+ + + ++ L       +         + 
Sbjct: 536 GDLFAAILQQHELRDRDAPHPRILIWGTLEARVMGADLLILGGLNEGSWPELPGADPWLN 595

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             +    G+ +   +     +     +                     A+ Q+ + +   
Sbjct: 596 RRMRHKAGLLVPERRIGLAAHDFQQAV---------------------AAPQVWLTRALK 634

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
           + + +    R    ++       +R     L  +  K     +       E        T
Sbjct: 635 SDDAETVPSRWLNRLMNLMNGLPDRSGPQAL--AAMKARGGHWLALARALERPQPSPPAT 692

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
                   +   +  S  +         +           L  L        RG++IH++
Sbjct: 693 RPSPAPPVEARPRSLSVTEIKHLIRDPFHIYAKRVLRLAPLNPLQRAPDALLRGILIHEV 752

Query: 790 LQVIFTLPEHKRKNFITSYCTKN--AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
           L+              T    +   A +   +                 +    +    +
Sbjct: 753 LEEFVKESLSDPSQLTTEALLRRTTALIGDPERVPYPTTRHLWQARLGRVAEWFAETERA 812

Query: 848 EVSVSGKINCPKKDI--------IISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPY 898
             +++   +               + G+ D+I I       +++YKT     +  +    
Sbjct: 813 RQAIARPAHFEIMGHAEIPALGFTLRGKADRIDIDDRGGAHLYDYKTGAAPTESQQRHFD 872

Query: 899 THIAQLSIYEKILKD-----SYPNKSLVCLLIYVS-EPKVFIIPQNKLNKA 943
               QL +   +++        P  +   + + V+  P+    P  ++   
Sbjct: 873 K---QLLLEAAMVERGAFKDLQPRHTEQAVFVSVANNPREVPAPLEEMPAQ 920


>gi|329960509|ref|ZP_08298897.1| hypothetical protein HMPREF9446_00456 [Bacteroides fluxus YIT
           12057]
 gi|328532739|gb|EGF59526.1| hypothetical protein HMPREF9446_00456 [Bacteroides fluxus YIT
           12057]
          Length = 970

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 108/857 (12%), Positives = 239/857 (27%), Gaps = 142/857 (16%)

Query: 148 DFEDL---IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
           DF+D+   +++ + L         I            +D+       Q E IR   ++F 
Sbjct: 105 DFDDVDKNLVDADKLFTNLQDLKNI------------MDDYDFLDKEQEEAIRQFFQNFS 152

Query: 205 VGKNTHSSPRTLFA---VGDEKQSIYS-----FHGAEPKRVLREKRINQKRATNAGQKFS 256
           + K T    + +     +GD    IY        G          R   ++       + 
Sbjct: 153 IEKRTELKNKFISLWDKLGD----IYRHYRKNLTGLGIAYEGMMYRNVMEQLATDKLHYE 208

Query: 257 IIELPLSFRSTADILTVVDKVF---SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                       ++L  V+  F              D                T +  E 
Sbjct: 209 RYIFV-----GFNVLNKVETEFFLRLQNAGKALFYWDYDVFYTRLPREQKPPYTHEAGEF 263

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQ-----ESSASILARRIAYTISNMIGTDTIFSNGKK 368
           ++   +   N   E+         Q       + +  AR +   I  M   +   +    
Sbjct: 264 ILRNLELFPNQLPETAFDVLRKPKQVRFISAPTENAQARYLPEWIKEMKEKNKNSTGKDG 323

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + ++ +VL  +    P++  +   +KN     V     F L        + +L    
Sbjct: 324 KWKEKENAVVLCNEALLLPVLHSIPSEVKN-----VNITMGFPLAQTPVYSFINSLVELQ 378

Query: 429 LSQEDDL-------SFVCMLKSPLF--------NFSEDDIFKICTQRHETETVYEYIQKF 473
            +   +        + + +LK P             +            +E   +   + 
Sbjct: 379 TTGYRNDTGRYTYEAVLAILKHPYTCQLSSSAEGLEKQLTKDNRFYPLPSELRQDAFLEQ 438

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                +    + +Y+ +L+         +     +  +  R+     +       ++  +
Sbjct: 439 VFTPQNGTHALCRYLTDLLREVAVIYRQEKDAEDIFNQLYRESLFKSYTL-----INRLV 493

Query: 534 NFTLRNE--QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
           N     E       +L+ L++ L                 +++M V   + L+   + ++
Sbjct: 494 NLIETGELSSLRTDTLKRLLNRLLTSANIPFH--GEPAIGMQVMGVLETRNLDFRNLIML 551

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                       +   I  +L    G+     ++              +   + E   LL
Sbjct: 552 SLNEGQLPKAGGESSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAENITLL 605

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           Y                NT+++  +       M+     +   +    L    +      
Sbjct: 606 Y----------------NTASDGLNRGEMSRFMLQFLVESPHDISYEYLEAGQSP----- 644

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
            + +     +   E  E + ++ +  + P+ LFSP   +      L        G    E
Sbjct: 645 -QQTRDIIIDKTPEILERMHRIYNIHRHPRALFSPSALNAYLDCRLKFYYRYVAGLKAPE 703

Query: 772 SLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKL------------ 815
            + ++  +   G I H   ++    +    +  RK  + +    + KL            
Sbjct: 704 EVSAEIDSALFGTIFHYSAELVYKDLTAHNKEIRKEDLEALLKNDVKLQAYVDNAFKEKF 763

Query: 816 ----------------WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
                             AK   + L  + +   +             EV    ++    
Sbjct: 764 FHVSQTEQPEYNGTQLIHAKVIASYLRQLLK--NDLQYAPFCMEAMEKEVDEVMEVETSA 821

Query: 860 KDIIIS--GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEK 909
             + +   G ID++      + I +YKT      P+ IE +         +I Q  +Y  
Sbjct: 822 GKLSLKIGGTIDRMDSKGDTLRIVDYKTGGTPKIPENIEQLFTPANNRPNYIFQTFLYAS 881

Query: 910 ILKDSYPNKSLVCLLIY 926
           IL    P K +   L+Y
Sbjct: 882 ILCRRQPLK-VAPSLLY 897


>gi|258514810|ref|YP_003191032.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778515|gb|ACV62409.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
          Length = 564

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 92/299 (30%), Gaps = 38/299 (12%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T+L +   +++   +     + S    FF TQ  T               + K+ L+   
Sbjct: 153 TLLNRVNVMREQFMSSDEYGQLSSQERFFSTQNGTFLLEEFLWMKANGYVNKKDYLE--- 209

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
                  +R       + T A       +   Y    ++    D  D+      LLK R+
Sbjct: 210 ------VERTGRSHNPRLTKAQRNTIYIVFEEYCRWMEERFHRDL-DMEDYALLLLKNRE 262

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                 Y      ++I +DEVQD   +Q   I++L +          + +++   GD KQ
Sbjct: 263 HIPRTMY-----YDYIFVDEVQDLQPMQ---IKALVQ---------YTNKSIVLSGDPKQ 305

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            IY      P          Q R            L  +FRST  I+T+ + +       
Sbjct: 306 RIYK---RTPHTYANLGLQLQGR--------RNRTLTKNFRSTKQIMTLANAINFDDVQN 354

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
             L          R          ++   +V +  ++ +       +      +E    
Sbjct: 355 DRLDAVDFVKEGDRPEIRFYSSDNEMHRYLVQEIKNRLSEDPGCSIAVIHRYEEELHRR 413


>gi|91776105|ref|YP_545861.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylobacillus
           flagellatus KT]
 gi|91710092|gb|ABE50020.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylobacillus
           flagellatus KT]
          Length = 940

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/459 (11%), Positives = 128/459 (27%), Gaps = 57/459 (12%)

Query: 481 FQHVIKYIHELIHIAQFCSPHDFFTLILG--AKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
               +  + E           D     L      GRQ+ +S F  + I   DE L     
Sbjct: 398 ISDALAILQEQHGQQLPSVWADVMQRTLDALEWPGRQRSLSSFEFQAIKAFDEVLQALAS 457

Query: 539 NE--QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
            +  Q +    Q L    E     I +  +     +++M +  +       ++++     
Sbjct: 458 LDVLQQALPFSQALARLRELVQEKIHQPEAEGEVRLQVMGMLESVSQPLHGLWVMGMNDY 517

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           V+         +  ++    G+P       + + + +   + + +       RLL+    
Sbjct: 518 VWPPPPRPNPLLPAAMQRQYGVP------NADSAVQAAFAQVVHQ-------RLLHSA-- 562

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
               Q +I   +    E++         +  +    E    +    +    + + +    
Sbjct: 563 ----QQVIFSSALKDGERELRPSPLLQAIPLADAMPELSLSLAQALAERDGKPLQWLDDH 618

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
             P     E       L+  Q +                              L++ ++ 
Sbjct: 619 QAPPVEEGEHISGGTGLLKAQAVCPAWAYFQYR---------------LHARALKAPVNG 663

Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
                RG ++H +L+  +          +     + A     ++  ++       + +  
Sbjct: 664 LDAAGRGTLVHLVLERFWRGRGLHDLQAMDEMQLEQALGEAVQDGLSIYADTCGEVLSEA 723

Query: 837 M------------TTAMSCDSYSEVSVSGKINCPKKDIIISG-----RIDQISI-SQQNI 878
                           ++ +   E   +   +  ++ ++I G      ID+I      + 
Sbjct: 724 FVALETLRLTRLLKGWLAFERMREQPFTVLASEQQQKVLIEGVEITLIIDRIDQLEDGSR 783

Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK-ILKDSYP 916
            + +YKT                 QL +Y   +L    P
Sbjct: 784 IVIDYKTGRKPDTRNWAQSRITEPQLPVYAAFVLSSLDP 822


>gi|317507956|ref|ZP_07965650.1| hypothetical protein HMPREF9336_02022 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253744|gb|EFV13120.1| hypothetical protein HMPREF9336_02022 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 273

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 64/213 (30%), Gaps = 34/213 (15%)

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSD------NQTFNRGLIIHKLLQVIFTLPEHKRKN 803
             +    L+PS ++      L  L          +    G  +H L  V     E +  +
Sbjct: 2   AEDGVVTLSPSRVEQLLVCPLRWLFERAVPSAPGEAAAVGTAVHLLASVSGRFSEEELAS 61

Query: 804 FITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCDSYS----EVSVSGKINC 857
            +    ++       P    +     + RLL       A S    +    EV V   +  
Sbjct: 62  ALDEAVSQADARSARPPWAAQRRREQLGRLLATFSGWLAASRGELTEVGVEVPVEMTLPA 121

Query: 858 PKK------------------DIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPY 898
                                ++ I GRID++  +    + I + KT             
Sbjct: 122 LGGRSGSLPRASRAPIADVELEVRIKGRIDRLEKTRDGELVIVDLKTAKTPRSVASVHED 181

Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
              AQL+ Y+ ++  +         L+++  P+
Sbjct: 182 ---AQLACYQLVVGAAREEPVAGGRLVFLGAPR 211


>gi|229541420|ref|ZP_04430480.1| ATP-dependent nuclease subunit B [Bacillus coagulans 36D1]
 gi|229325840|gb|EEN91515.1| ATP-dependent nuclease subunit B [Bacillus coagulans 36D1]
          Length = 1167

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 104/998 (10%), Positives = 280/998 (28%), Gaps = 180/998 (18%)

Query: 48   KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
            K  Q +   S+T       ++L    L  +                 D  E++      F
Sbjct: 74   KILQEVGGISRTHVSSSGLNMLIRKILEDQKEELSVFTRAADKTGFIDNVERILTEFKRF 133

Query: 108  ----IKIRDRFNTYKMFKSTLAS---LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
                 +++++  + +           L   + +   YE+ K +   +D ED +      +
Sbjct: 134  CVSPAQLQEKRASIEEADGERVLSDKLHDLECVYQAYEQ-KLEGKYIDSEDYLRLLASAI 192

Query: 161  KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
            +K                 I ID     +  ++ VI  L +         ++ R      
Sbjct: 193  EKSRYLDDA---------EIYIDGFHTFNPQEYLVIGELLKKCRRVTVALTTDR------ 237

Query: 221  DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
                   +F G +P  +   +               I EL  +F                
Sbjct: 238  -------AFRGMQPDDLYLFR-------MPGEAYAHIYELARAF---------------Q 268

Query: 281  PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
             E  + ++       RH S R  Q    +L         S    Q  +  +  + + +  
Sbjct: 269  IETEEDVALYEPVRFRHESLRFLQSRFEELPFPSFPGESSIEIWQANNRRAEIEGVARSI 328

Query: 341  SASILARRIAYT-ISNMIGTDTIFSN---------------GKKRVIQAKDILVLVRKR- 383
              +++     Y  I+ ++     + +                +KR +    ++ L+R   
Sbjct: 329  REAVMEGSCRYRDIALLVRNGEAYQDLIETVFYDYDVPYFIDRKRPMLNHPLIELIRSTL 388

Query: 384  ---KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
               +       + R +K +            +      +       + +  E   S    
Sbjct: 389  EIIRGNWRYEPVFRAIKTELLFP---PGDTRMLREKMDRLENYCLAYGIQGERWTSRKRW 445

Query: 441  LKSPLFNFSEDDIFKICTQRHETETVYE------YIQKFANCGISKFQHVIKYIHELIHI 494
                +     +++ +   +R   + + E            +  + + +        L   
Sbjct: 446  EYRRIRGLELENLPQTDEERKIEQELNELRLLVTAPILRLSRRLKRARTGKALCEALYLY 505

Query: 495  AQFCSPHDFFTLI-LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
             +     +    + L  ++      +R  ++  D +   L+  +    +  + + +  + 
Sbjct: 506  LEELEIPEKLEALRLEKEEAGDLVAAREHDQAWDEVMGVLDQYVEILGDEPADVGKFSAI 565

Query: 554  LEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            +E    ++K +      ++V +  +  ++  +  + F++     V   K  +   +    
Sbjct: 566  METGLESLKFSIVPPALDQVLVANLEQSRLSDVKLAFIIGVNDGVMPAKISEDGVLNDEE 625

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
             +   +               +++   K+   +E   + Y  +T  S++L++        
Sbjct: 626  REYLRL------------TGLEIMPGSKRRLLDEEF-IFYRALTTPSEKLVLSFPLADEE 672

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
             K      + + + D F        +     + + +  AY             + +  K+
Sbjct: 673  GKALLPSPFINRIEDMFPARGGALWVNDPAELEEKQQAAYISHPAAAIAFVTSQLQLKKR 732

Query: 733  LMDEQKIPKKLFSPIKNDINEPYIL-------------------------------NPST 761
                       ++                                           + S 
Sbjct: 733  GYPMADFWWDTYNFYMEHPEWKNRAAHAFSSLFYQNKARKLSEKTSRELYGDHILASVSR 792

Query: 762  IDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFT--------------- 795
            ++                  E  +      N G + H  L+ I                 
Sbjct: 793  MEQFFTCPFSHFSTYGLRLRERDVFRLDAPNIGDLFHGALKWISDTLQREGIPWSEITKQ 852

Query: 796  LPEHKRKNFITSYC--TKNAKLWPAKEYKNLLLSITRLL-ENPMMTTAMSCDSYSEVSVS 852
                  K  +       ++  L  +K Y+ +   + +++     + +  +  S  E  V+
Sbjct: 853  QSMELAKAAVDDLAPKLQHQILLSSKRYQYIKRKLEQVVGRASYILSVHAKRSGFE-PVA 911

Query: 853  GKINCPKKDII--------------ISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIE 894
             ++    K  +              + GRID++  + S+  ++  I +YK+  H   ++ 
Sbjct: 912  MELAFGPKKELPPLSFTLKNGAKMELQGRIDRVDKAESENGVYVRIIDYKSSAHK-LDLT 970

Query: 895  HIPYTHIAQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
            ++ Y    Q+  Y  ++    K     +++   ++Y  
Sbjct: 971  NVYYGLDLQMLTYLDLIMTYSKQLTGEETIPAGVLYFH 1008


>gi|168181295|ref|ZP_02615959.1| ATP-dependent nuclease subunit B [Clostridium botulinum Bf]
 gi|237793750|ref|YP_002861302.1| ATP-dependent nuclease subunit B [Clostridium botulinum Ba4 str.
           657]
 gi|182675234|gb|EDT87195.1| ATP-dependent nuclease subunit B [Clostridium botulinum Bf]
 gi|229261419|gb|ACQ52452.1| ATP-dependent nuclease subunit B [Clostridium botulinum Ba4 str.
           657]
          Length = 1147

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/682 (9%), Positives = 179/682 (26%), Gaps = 140/682 (20%)

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
           + +  + KDI V+     D      +   +   Y I    + +  + ++  I  +++   
Sbjct: 332 RDKGCRFKDIAVIT---GDLEGYENIISSVFLQYNIPFFIDKKREINNNPIIVLILSALE 388

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQKFANCGI------- 478
            +       S    LK+ L + + +++  +           Y++                
Sbjct: 389 VLSKNWTYESVFRYLKTGLLDINNEEMDILENYVLANGIKGYQWTNDRFWEHKSFSNYGL 448

Query: 479 ------------------------------SKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
                                                ++   L       +  D    ++
Sbjct: 449 EDQVEKELLAKINDIRYKAMEPIVSLNKNFKSIDRAKEFCEVLYEFLCSINLPDKIQSMI 508

Query: 509 GAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
              +   +   +   N++ +++ E L+  +        SL+E    L+      +     
Sbjct: 509 EDFRAEGEVEKASEYNQIWNIVMEVLDQIVEVIGEEKVSLKEFFKILQTGFSEYEIGLIP 568

Query: 568 NH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
              ++V + ++   +     ++++V     +F            +   + GI     +  
Sbjct: 569 PTLDQVIVGSITRLRSHNINILYIVGVNDGIFP-----------APLKEEGILSDADREF 617

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
             +  +         +   E   L+Y  +T  S  L +         K          + 
Sbjct: 618 LSDKGLEIAKDTKSIA--FEEQFLVYSTLTTPSKYLRLSYPIADGEGKTLRPSIIISRIK 675

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD--EQKIPKKLF 744
             F N      I   N   ++                  R++     +D       K   
Sbjct: 676 KIFTNICEENDIVKLNGEEEELKNISSAKPTFNYLISNLRKDVEGVKIDNIWGDTYKWYL 735

Query: 745 SP---------------------------IKNDINEPYILNPSTIDTKGKTNLESLLS-D 776
                                        I+N   +P  ++ S ++   +      +   
Sbjct: 736 ENEFWIEKLNRLIKGFDYTNQSKYIETKKIRNLYGKPLKMSVSRVEKFSQCPFAYFVQYG 795

Query: 777 NQTFNR----------GLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKN 823
            +  +R          G+++H +L+      E    +      ++  +       +E  N
Sbjct: 796 LKAKDRKIFNLSYPDLGILMHGVLEKFSQKLEKQGLEWDTMDLNWAEEEIDKLINEELDN 855

Query: 824 --------------LLLSITRLLENPMMTTAMSCDSYS----EVSVSGKINCPKK----- 860
                         +  S+ ++L   +    +                  +         
Sbjct: 856 KSLDILNSSKRYEYVTKSVKKILRRSI--WLIGEHIKRGNFKPSYYELSFDIDGDYPPIA 913

Query: 861 -----DIIIS--GRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                  +++  GR+D++         +  I +YK+      ++  + Y    QL IY  
Sbjct: 914 MELHSGEVVNLIGRVDRVDLLQKDGATYLKIIDYKSG-IKEFKLSDVYYGLQLQLLIYLD 972

Query: 910 I-LKDSYPNKSLV---CLLIYV 927
             L +      +      L+Y+
Sbjct: 973 AILTELAERSEINGEPGALLYL 994


>gi|242240369|ref|YP_002988550.1| UvrD/REP helicase [Dickeya dadantii Ech703]
 gi|242132426|gb|ACS86728.1| UvrD/REP helicase [Dickeya dadantii Ech703]
          Length = 615

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/427 (14%), Positives = 117/427 (27%), Gaps = 110/427 (25%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             +  IDE QDT+  Q+E+ +S+  D             + AVGD KQ I  + GA    
Sbjct: 223 YEYAFIDEFQDTTYQQYEIFKSIFLD---------KKIKITAVGDTKQRIMGWAGALHSA 273

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
               K        N        EL  + RS  ++++                      + 
Sbjct: 274 FEIFKNDFAIEHHN--------ELLSNRRSLKNLIS------------------YQRMME 307

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
              +       ++L E   S    Q +                         IA  I   
Sbjct: 308 AFMNHADNKPEMELIENEGSAKLIQFDESNIEG-----------------AYIALCIQKW 350

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDH 415
           I             +  ++I +L R    +   T        D  I     +    L + 
Sbjct: 351 IEKG----------VDEREICILFRNP--SKHYTDKIISSLQDLDIKCRIENTYQELLNE 398

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
             ++ ++ +  F   ++    +               +  +C  R   ++      +   
Sbjct: 399 AIVQLILKMLMFTCDKKSIEGWNS------------TMELLCNIRGVNKS------RDIT 440

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
               +    IK   ++       +  D+   ++                    +DE  ++
Sbjct: 441 RLEKELSRFIKSNKDI-----NGNVVDYIYGLISIFG----------------IDEIKSY 479

Query: 536 TLRNEQNSYSS--LQELISELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVF 589
             +    +     +  L   LE                 +  + +MT+H +KGLE   V 
Sbjct: 480 FPQYINGNGLDYTINSLSQHLETLGIKDNKLAAIDMLLGNKTIPLMTIHKSKGLEFKKVI 539

Query: 590 LVDTGSQ 596
           +V     
Sbjct: 540 VVGLEPG 546


>gi|213583749|ref|ZP_03365575.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 280

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/207 (8%), Positives = 54/207 (26%), Gaps = 38/207 (18%)

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
             +  D+     ++ + +    +    +     +  + G  +H L + +        +  
Sbjct: 19  HSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQPIDPQWV 78

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV----SVSGKINC 857
                    +          L ++  +  N     ++     +   E+     ++  +  
Sbjct: 79  QEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLPIAQPLTA 138

Query: 858 PKKDIIIS----------------------GRIDQISISQQNIFIFEYKTHHHVPQEIE- 894
            + D +I                       G ID +   +   ++ +YK++         
Sbjct: 139 GELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWLGEDSAAY 198

Query: 895 --------HIPYTHIAQLSIYEKILKD 913
                      + +  Q  +Y   L  
Sbjct: 199 TQTAMAAAMQAHRYDLQYQLYTLALHR 225


>gi|260429437|ref|ZP_05783414.1| double-strand break repair protein AddB [Citreicella sp. SE45]
 gi|260420060|gb|EEX13313.1| double-strand break repair protein AddB [Citreicella sp. SE45]
          Length = 977

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/501 (9%), Positives = 123/501 (24%), Gaps = 47/501 (9%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               E E    +    A        H    + + + +    +       +    +  ++ 
Sbjct: 449 RAWGEAEGFGPWADWVAASFCQPPVHGTHLLADWLDLHVARAEAIAAGPMADDSELWKEA 508

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             R     +D L +   +    +   Y+ L               R   A H  + I   
Sbjct: 509 AGRKTRATVDGLRDEAGYGTDLDARDYADLFN-----AVLSRGELRDRDAPHPRILIWGT 563

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
             A+   + ++ L       +         +   +    G+ +   +     +     + 
Sbjct: 564 LEARVNGADLLILGGLNEGSWPELPGADPWLNRRMRHKAGLLVPERRIGLAAHDFQQAV- 622

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                               A+ Q+ + +   + + +    R    ++        R   
Sbjct: 623 --------------------AAPQVWLTRALKSDDAETVPSRWLNRLMNLMNGLPARHGP 662

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
             L  +  K     +       E        T        +   +  S  +         
Sbjct: 663 EAL--AAMKQRGAHWLALARALETPRPSPPATRPSPAPPVEARPRALSVTEIKTLLRDPF 720

Query: 758 NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW- 816
           +           L  L        RG +IH++L+              T    + +    
Sbjct: 721 HIYARRVLKLQALNPLQRAPDALLRGTLIHEVLEQFVRQSVSDPAQLTTEALLRLSVQIV 780

Query: 817 -PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI--------IISGR 867
              +                 +    +    +   ++  ++  +            + G+
Sbjct: 781 GDPEVVPYPTTRHLWQARLAKVAEWFAETERARQQIARPVHFEQMGRGEIPALGFTLRGK 840

Query: 868 IDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK-----ILKDSYPNKSLV 921
            D+I + +  N  +++YKT     ++ +        QL +          K+  P  +  
Sbjct: 841 ADRIDMDERGNAHLYDYKTGAAPSEKEQLHFDK---QLLLEAAMVERGAFKELQPRHAER 897

Query: 922 CLLIYVSEPKVFIIPQNKLNK 942
            + + ++  K   +P      
Sbjct: 898 AVFVSLAPGKPREVPAPLAEA 918


>gi|218903937|ref|YP_002451771.1| uvrD/Rep helicase family protein [Bacillus cereus AH820]
 gi|218534956|gb|ACK87354.1| uvrD/Rep helicase family protein [Bacillus cereus AH820]
          Length = 689

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|150024265|ref|YP_001295091.1| hypothetical protein FP0155 [Flavobacterium psychrophilum JIP02/86]
 gi|149770806|emb|CAL42271.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 922

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 65/498 (13%), Positives = 140/498 (28%), Gaps = 79/498 (15%)

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI----------LGAKKGRQQFISRFG 522
             +  +  FQ     + EL+       P +   LI          L +     + +  F 
Sbjct: 404 ITHQKVVSFQENPNRLFELLFQKWNQKPIEILELICEILLIIKSNLESISEEDKVVKTFL 463

Query: 523 NEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
             +  V+++ + +  +NE   +  +L  +  ++               + ++IM V  ++
Sbjct: 464 YSIYKVINKLITYCSKNEYIENIDTLHTIYKQV--IDLAEVSFEGEPLSGLQIMGVLESR 521

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
            L+   V +       F         I   +  + G+P +  +          L++  K 
Sbjct: 522 VLDFETVIITSLNEGKFPAGKTVNSFIPYDVKRELGLPTYKEKDAIYTYHFYHLLQRAK- 580

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                               L   +       +KS   T  ++     HN        + 
Sbjct: 581 ----------------NIYLLYNTESDGLDGGEKSRFITQLEVEKQPKHNLTHEIIQPVV 624

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
            +I     +               +E    +      +   + +PI+        +  S 
Sbjct: 625 PNIASKTIVIP----KAKSAMIRLKEIATGKGFSPSALTTYIRNPIQFYFQRILSIRESE 680

Query: 762 IDTKGKTNLESLLSDNQTFN-RGLIIHKLLQVI------FTLPEHKRKNFITSYCTKNAK 814
                       + +N   N  G IIH+ L+ +        L        +     +  K
Sbjct: 681 -----------EVEENIALNTLGTIIHQTLEALYKPIINKFLTTDDLNKMLAVANDEVLK 729

Query: 815 LWPAKEYKNLLLSITRLLENPMMTT-----AMSCDSYSE-------VSVSGKINCPKKD- 861
            +     +  +     LL   +         +      E       +++   +    +D 
Sbjct: 730 QFKEIYKEGEVKKGKNLLAFEVAKRNVFNFLIEEKKQIENGDVVKILALETPLERILEDN 789

Query: 862 -----IIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIAQLSIY 907
                I I+G +D+I I    I I +YKT       ++          I    I QL  Y
Sbjct: 790 SLPFPIKIAGNVDRIEIRNNKIRIIDYKTGKVEKNSVQLKDWNGLTLDIKNDKIIQLLCY 849

Query: 908 EKILKDSYPNKSLVCLLI 925
             + +       +   +I
Sbjct: 850 AFMYEKQANGLEIEAGII 867


>gi|85705746|ref|ZP_01036843.1| hypothetical protein ROS217_10612 [Roseovarius sp. 217]
 gi|85669736|gb|EAQ24600.1| hypothetical protein ROS217_10612 [Roseovarius sp. 217]
          Length = 979

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 109/410 (26%), Gaps = 36/410 (8%)

Query: 495 AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
           A      +              ++   G E    + E           S S    L  ++
Sbjct: 487 AAHLELAEQIAHGCHGTGSGTLWLKDAGQEAQKAVTELQTEAHHAGTLSASDYSSLFHKV 546

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   R     H  + I     A+   + ++ L       +         +  +L  
Sbjct: 547 --LSAREVRNPVDPHPHILIWGTLEARVQGADLLILAGLNEGSWPVSPKADPWLNRALRH 604

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G+ +   +     +     I   +            V +TR+            S + 
Sbjct: 605 QVGLLLPERRIGLSAHDFQQAIAAPE------------VWLTRSVR----------SADA 642

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           ++    W + + +              +++     +  + +    E     R        
Sbjct: 643 ETVVSRWLNRILNLLSGLPDQGGQAAIDAMRARGHVWLDHAAALEEPGEAPRAARPAPAP 702

Query: 735 DEQKIPKKLF-SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                P  L  + IK  I +PY +    I       L+ L+       RG ++H++L+  
Sbjct: 703 PVAVRPDHLTVTEIKRLIRDPYAIYARHI--LKLRPLDPLMRAPDALLRGTVLHEILEGF 760

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---SCDSYS--- 847
                        +   ++A+   A+           L     +            +   
Sbjct: 761 IRETLEHPAQCTHATLMRHAETVLAQNVPWAEARALWLARLERVADWFIDTEAQRRALAH 820

Query: 848 EVSVS--GKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIE 894
            V     G+   P     +S + D++ +     + I++YKT      + +
Sbjct: 821 PVYFEAAGRATLPDLGFTLSAKADRLDLDDLGRLHIYDYKTGAPPSTKEQ 870


>gi|313622691|gb|EFR93053.1| ATP-dependent nuclease subunit B [Listeria innocua FSL J1-023]
          Length = 1157

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 72/737 (9%), Positives = 178/737 (24%), Gaps = 147/737 (19%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       +A  I  +      + +         D  +L     ++  I       +
Sbjct: 307  QANNRRAEMEGVAREIRQLTLNGYRYRDIAILTRNISDYDILCETVMESFDIPIFIDKKR 366

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRF------------------------------ 427
               K   +   R  +   L       + +                               
Sbjct: 367  AMAKHPFIEFIRSSIDAILFNWKYEPIFQAVKTEFFFDVAENTTIMRRKADILENYVLEN 426

Query: 428  -ILSQEDDLSFVCMLKSPLFNFSEDDI---------FKICTQRHETETVYEYIQKFANCG 477
             I ++         +   +   S + +           +  +  +         +     
Sbjct: 427  GIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEELATQSVINEMRKLIVEPLSTLENNITN 486

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                      ++  +   +     + +  +       +  ++R   +    + E L+  +
Sbjct: 487  AKTGIEFAMALYHYLEQVKAVEHLESWRQVAEENGYLE--LAREHEQAWSSISELLDEFV 544

Query: 538  RNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                     +      +              + ++V +  +  AK L   V+F +     
Sbjct: 545  EVLGEEELDINSFSEIITTGLDALEFSLLPPSLDQVVLADMENAKLLNMKVIFAIGMNDG 604

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            V   +   K  +     D   +     +  ++NNI              E + L Y  M+
Sbjct: 605  VMPLRQKDKGILSDQDRDSLRVENSNLKPSAKNNIG-------------EEDLLAYKIMS 651

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
              SD+L +   +     K  ++  +   +   F N      +   + +N  E  +Y  S 
Sbjct: 652  LPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFKNLNESVYLTDPSLLNDKEQSSYIRSK 711

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL------------------- 757
                     + +  K+      +    ++    +  E                       
Sbjct: 712  QATLGLLTSQLQMYKRGYPLSNVWWDAYNSYFENSEESEAAKQVLSSLYYENNTKPLQET 771

Query: 758  ------------NPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVIF 794
                        + S ++       +                 Q  + G I H  ++ I 
Sbjct: 772  TAKNLFGENIHASVSRMEKFFSCEFQHFAQYGLKLEERAHYKLQAVDMGEIFHGAMEWIS 831

Query: 795  ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---------S 842
                       N     C + AKL        +   I   L +  M             +
Sbjct: 832  AELKRTNRDWGNLTEEECRQMAKLAMTFLAPKIQHEIL--LSSKRMEYIQYKLLQIITRA 889

Query: 843  CDSYSEVS---------VSGKINCPKK------------DIIISGRIDQI--SISQQN-- 877
                +E +         +                     ++++ GRID+I  +       
Sbjct: 890  TTVLNEQAKSSAFRPIGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDAAEQDNRTF 949

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL--LIYVSEPKV 932
            + I +YK+  H    +  + Y    Q+  Y  I+         K+      L +    + 
Sbjct: 950  LRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQY 1008

Query: 933  F----IIPQNKLNKAFA 945
                  +    + +   
Sbjct: 1009 VQAEKELSDEAIARELQ 1025


>gi|225425986|ref|XP_002269567.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2554

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/390 (14%), Positives = 123/390 (31%), Gaps = 54/390 (13%)

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
             +  ++   T         +   YE+ K K    D  DL+++ +  L+        RY+ 
Sbjct: 1154 LSKARVSTLTREQRDRVYDIFLEYEKKKFKKGEYDLSDLVMDLHFRLRNE------RYEG 1207

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFH 230
            D  I+ + IDEVQD ++ Q  + + ++++   G             GD  Q+I     F 
Sbjct: 1208 DH-IDFVYIDEVQDLTMRQIALFKYVSKNIDEG---------FVFSGDTAQTIAKGVHFR 1257

Query: 231  GAEPKRVLRE------KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
              + + +  +      +          G+   I  L  +FR+ A +L +   +  +  + 
Sbjct: 1258 FQDIRHLFFKEFVLGSRTDATDEKKEKGKLSKIFHLSQNFRTHAGVLNLAQSIIDLLYHF 1317

Query: 285  QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
              L+ D                 ++      +      + +       F +       + 
Sbjct: 1318 FPLTIDVLNPET-SLINGEAPVLIECGNFRDALPTIFGDSENAQENVGFGAEQVILVRND 1376

Query: 345  LARRIAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
             A+     IS  +G   +     + + ++ +D  VL+     +       R L       
Sbjct: 1377 SAK---EEISKYVGKKALVLTILECKGLEFRD--VLLCNFFGSCPFKHHWRVLYQFMN-K 1430

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF------SEDDIFKIC 457
            +   D   L               I     D +   +L S L         +   ++   
Sbjct: 1431 INLVDSKSL---------------ISFPSFDEAKHNVLCSELKQLYVAITRTRQRLWICD 1475

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKY 487
                 ++ ++EY +K +   +     ++  
Sbjct: 1476 IIDEVSKPMFEYWEKLSLIQVRCLHDLVAQ 1505


>gi|225375923|ref|ZP_03753144.1| hypothetical protein ROSEINA2194_01559 [Roseburia inulinivorans DSM
           16841]
 gi|225212244|gb|EEG94598.1| hypothetical protein ROSEINA2194_01559 [Roseburia inulinivorans DSM
           16841]
          Length = 1143

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 71/726 (9%), Positives = 186/726 (25%), Gaps = 114/726 (15%)

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES--SASILARRIAYTISNMIGT 359
            G+    +    +     +   P    W    D L   S  +       +A  I+  +  
Sbjct: 276 DGKNHRYKNAPSLYFMEQNLFRPYYHKWRQKEDELRIVSLKNPREELHFVAREITKFVRE 335

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                    +    KDI V+     D  L       +   Y I    +    +  H  I+
Sbjct: 336 ---------KQYCYKDIAVVT---GDVSLYDNYVDEIFAAYDIPYFLDQTRTILFHPFIE 383

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD--------IFKICTQRHETETVYEYIQ 471
            + A+   +       S    L+  L + +E          + K    R + E  + ++ 
Sbjct: 384 FIRAVLEVVELDFSYESVFRFLRCGLTDITEQQIDLLENYVLAKGIRGRKKWEKQWTFVF 443

Query: 472 K--------FANCGISKFQHVIKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQ-- 516
                      N    K       + E     +         ++    +   +K +Q+  
Sbjct: 444 DDTEKENLTEMNEVREKIYGFFAPLSEAFTQGKTVRDETTVLYELIEKLEIEQKLKQKEL 503

Query: 517 --------FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSA 567
                     ++   ++  ++ +  +  +    +    ++E    L+             
Sbjct: 504 EFERQGNQVKAKEYAQIYKIVMDLFDKVVDFLGDEVLPVKEYADILDAGFEAARVGVIPP 563

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH-KHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +++V I  +   +     ++F +     V     +   +             + +    
Sbjct: 564 GNDKVTIGDIERTRLNHIKILFFIGVNDGVVPKAGNAGGIISQFEREKMVACHLELAPGA 623

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYV---GMTRASDQLIICKHSNTSNEKKSNQR---- 679
                +     +L  +   ++  + +       +A  +            +K+ +     
Sbjct: 624 REKVFIQRFYLYLNVTKPSDFLYVTFSKVNADGKALRRSYFVGTLLKMFPEKTVEEIEET 683

Query: 680 --------TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
                       M +      +  +    +    +  W A             E E+ +K
Sbjct: 684 TSADCIMTPKSSMAFFLEGLQDDDRASDFSQVEKRKLWNALSKFYLTDSEWKPETEKLLK 743

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTF 780
              +         +  +         + + ++                  E  L +  + 
Sbjct: 744 TAYEVHSDEPISHAVTQALYGTVLENSVTRLERFAACAYAHYLNYGLRLKERQLLEFASV 803

Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL--------LSITRLL 832
           + G I H  L+      E     +                   +          ++    
Sbjct: 804 DMGNIYHDALEHFSRRVEKSEYTWFNIPEDVQETFIEESMNDAIAGCKNAGAFENVRNRY 863

Query: 833 ENPMMTTAMSCDSYS---------------EVSVSG-------KINCPKKDII-ISGRID 869
               M   +    ++               EVS S        +     ++ + + GRID
Sbjct: 864 LTGRMRQTIKRTVWALTTQIQKGKFVPSDFEVSFSRADKLDAIRFQLSDEEKMNLLGRID 923

Query: 870 QI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLV 921
           ++    +   ++  I +YK+ +     +  + +    QL +Y        +  +P K   
Sbjct: 924 RVDTYETSDKVYVKIIDYKSGNTSFSLVN-LYHGLQLQLVVYMNAALELEEKRHPGKKAE 982

Query: 922 -CLLIY 926
              + Y
Sbjct: 983 PAGIFY 988


>gi|238923930|ref|YP_002937446.1| AddB [Eubacterium rectale ATCC 33656]
 gi|238875605|gb|ACR75312.1| AddB [Eubacterium rectale ATCC 33656]
          Length = 1156

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 83/849 (9%), Positives = 212/849 (24%), Gaps = 188/849 (22%)

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE-- 233
             + I  DE    + IQ ++I+ L           S    +    D ++ I+   G +  
Sbjct: 195 RNSVIAFDEFTGFTPIQNQLIKKLF--------VISKKIYVTLTIDCREDIFKSRGMQEL 246

Query: 234 PKRVLREKRINQKRATNAGQKFSI-IELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                R  +   + A   G +    I L  ++R              + EN +    +  
Sbjct: 247 FDMPKRTVKSLTEMAAFYGIEVEEPIILDKNYR--------------LAENEELSFMEQQ 292

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              + RSS       + +      + +                            +IA  
Sbjct: 293 LFRKRRSSFKKAPKHIHIDCLRDPKQEL--------------------------TKIARR 326

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I+ ++  +          ++ +DI ++     D  +     R + + Y I    +    +
Sbjct: 327 INELVRNE---------NLRYRDIAIVT---GDVNIYAGYVREIFDKYNIPYFIDATQEI 374

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
             H  I+ + ++           +    L+      S  +I  +           +    
Sbjct: 375 LFHPFIEFIRSIPDIAAQNFSADAVFRFLRCGFTELSASEIDVLENYVLACGVRGKSAWD 434

Query: 473 FANCGISKFQHV--IKYIHELIHIAQFC--SPHDFFTL----------ILGAKKGRQQFI 518
                + K +    I+ +++            +  F+            +          
Sbjct: 435 KKWVRLPKHKAGYDIELLNQSREYIMELLKPVYQVFSDKKSTVKDYVLAIYKLIVLLDIP 494

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA----------- 567
            +   +   +LD       +     Y  + +L  +                         
Sbjct: 495 DKLAKKEQALLDAGDQTASKEYGQIYKIVMQLFEKYVAVLGDECMDAEEFTQILDAGLDA 554

Query: 568 --------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                    ++ V I  +   +     V+F       +      +            GI 
Sbjct: 555 ADVAVIPPGYDTVTIGDIERTRLTNIKVMFFAGVNDGIVPKAAGR-----------GGII 603

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
               +   +   +       +++  +     LY+ MT+ S +L I      S +K +   
Sbjct: 604 SQYEREALKELDIELAPGAREQAFIQ--RFYLYLNMTKPSRELYISYTRLDSEKKAAQPS 661

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSIN----------------KDEWIAYEWSTHHPENTP 723
               ++   F      +   +   ++                 D W     +    + + 
Sbjct: 662 YLIGILKGMFPELVVTETEDVEQLLDISSRQSALDYLLSNEVDDRWCEIAAAVMFYDASV 721

Query: 724 LER-----------------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
            +                  E  I    +         +  ++        + +  +   
Sbjct: 722 SDAGDGNEVDDKAFTQKNSVERLINARFEHYSKDPISRNVARSIYGRHMEGSITRFEQFA 781

Query: 767 KTN-----------LESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKN 812
           +              E   S   + + G I H+ L+              +   +   + 
Sbjct: 782 RCAYAHFLNYGLRLTEREESGFTSLDMGNIYHEALERYSKKLDRESTDWFSVTDAKRDEL 841

Query: 813 AKLWPAKEYKN-----LLLSITRLLENPMMTTAMSCDSYS---------------EVSVS 852
           A     +         +  +         M        ++               E S  
Sbjct: 842 AMEAINEVIDEYAGFGIFDTAESQHSISHMKAVFKQTVWALTTQIRRGSFVPERFEFSFY 901

Query: 853 GKINCPKK-DIIISGRIDQI--SISQQNIFI--FEYKTHHHVPQEIEHIPYTH---IAQL 904
             ++      + I GR+D+      +  +F+   +YK+       +  +   +     QL
Sbjct: 902 ESLDMANDVTVDIKGRVDRTDTYTDEDRLFVKVLDYKSG----NTVFDLVKLYYGTQLQL 957

Query: 905 SIYEKILKD 913
           ++Y   + +
Sbjct: 958 AVYMDAVME 966


>gi|225468807|ref|XP_002263192.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2782

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 62/497 (12%), Positives = 143/497 (28%), Gaps = 57/497 (11%)

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
             +  ++   +     +   +   YE+ K +    D  DL+I+ +  L+       +    
Sbjct: 1313 LSEARVSTLSGQKREIIYDIFQDYEQMKMEKGEFDLADLVIDLHRRLRHERYMGDV---- 1368

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS---FH 230
               ++ + IDEVQD ++ Q  + + +  +   G             GD  Q+I     F 
Sbjct: 1369 ---MDFVYIDEVQDLTMRQIALFKYICRNVNEG---------FVFSGDTAQTIARGIDFR 1416

Query: 231  GAEPK--RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              + +          +       GQ   I  L  +FR+ A +L +   V    E      
Sbjct: 1417 FQDIRSLFHNEFVMESSDGRKEKGQVSEIFHLSQNFRTHAGVLKLSQSVI---ELLYRFF 1473

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
              S   +   +S I     V L                ++          E    +    
Sbjct: 1474 PQSVDILSPETSLIYGEAPVLLKPGKDENAIITMFGNSQNVGGNRFGFGAEQVILVRDDC 1533

Query: 349  IAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
                IS  IG   +     + + ++ +D  VL+     +  +    R             
Sbjct: 1534 ARKEISGYIGKQALVLTILECKGLEFQD--VLLYNFFGSSPLKNHWR------------- 1578

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF------SEDDIFKICTQRH 461
               ++ +++  +DL  L     S     +   +L S L         +   ++       
Sbjct: 1579 ---VIYEYMKEQDL--LDSTAPSPSFSQAKHNLLCSELKQLYVAITRTRQRLWICENTDE 1633

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
             ++ +++Y +K     +++    +   + ++  +           +L       +  +R 
Sbjct: 1634 LSKPMFDYWKKLCCVQVTQLDESLA--NAMLVASTPDEWKAMGMKLLREHHY--EMATRC 1689

Query: 522  GNEVIDVLDEFLNFT--LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                 D     L     L+        L    + ++              +         
Sbjct: 1690 FERAEDTYWARLAKAHGLKAAAEQKRDLNPDAAHVDLRKAAEIFEEIGQAHPAAKCYFEL 1749

Query: 580  AKGLESPVVFLVDTGSQ 596
             +   +  ++L   G  
Sbjct: 1750 NEYERAGRIYLEKCGES 1766


>gi|312794700|ref|YP_004027623.1| hypothetical protein Calkr_2586 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181840|gb|ADQ42010.1| hypothetical protein Calkr_2586 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 844

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 29/173 (16%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   YEE  K     D  DL      ++     +     K+  + + +LIDE+QD S IQ
Sbjct: 393 LYTKYEEWLKNKGFFDENDL----ARIVIDNIKNG----KLKAKYDFLLIDEIQDLSEIQ 444

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
              I +L ED           R +   GD  Q +       P      +   +       
Sbjct: 445 LYAIINLVED----------KRNIMVAGDVHQIV------NPTFFNFGR--FKNYFVCIN 486

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           + F+   L  ++RS   I+++ + +    E  +     ++  I  +S R G  
Sbjct: 487 KDFNEFSLSKNYRSQEKIVSLANTL---SEMRKKFIGGTSEDIIEKSIRDGGH 536


>gi|157150420|ref|YP_001450694.1| putative exonuclease RexB [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|251764616|sp|A8AY34|ADDB_STRGC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|157075214|gb|ABV09897.1| putative exonuclease RexB [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 1093

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 96/865 (11%), Positives = 237/865 (27%), Gaps = 125/865 (14%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           LI  T   L   ++  + R K D +    L+D   +    Q         +F        
Sbjct: 89  LIYRTLTELDDGELKVYGRIKKDPQFIQQLMDLYHELQTAQMSFADL---EFLEEPEKRE 145

Query: 212 SPRTLFAV-------GDEKQS--IYSFHG-----------AEPKRVLREKRINQKRATNA 251
               +F         GD   S  I +F             A+   V+             
Sbjct: 146 DLVKIFTAVATALNKGDFDSSSQIATFAQHILSGDTDEELADLALVIDGFTRFSAEEEYL 205

Query: 252 GQKFSIIELPL---SFRSTADILTVV---DKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                   + +   ++ S           +   +  +  + L+ED      +      + 
Sbjct: 206 VGLLHRKGVEIVIGTYASQKAYRAAFRDGNLYQASVDFLRKLAEDYQVKPDYIPYAEAED 265

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFD-SLPQESSASILARRIAYTISNMIGTDTIFS 364
              ++ + + S++D      + S T      +    +       +A +I   +       
Sbjct: 266 AFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG---- 321

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 ++ KDI +L     D        + + + Y+I         +  H  ++ + +L
Sbjct: 322 ------VRYKDIRLLF---GDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESL 372

Query: 425 GRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            R           + +LK+ ++   +++++          +              S+ + 
Sbjct: 373 ERLKRYNFQLEDLLNLLKTGIYGDLTQEELDHFEQYLRFADIKGAVKLAKDFTANSQGKF 432

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQN 542
            +  ++ +           F +    A     +F          D L   L      EQ 
Sbjct: 433 DLDRLNHIRRRVMAPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNLTALLQEESHQEQE 492

Query: 543 SYSSLQELISELEQYPPTIKRAH-----------------------SANHNEVRIMTVHT 579
            +  + +  S + +    +                            A  + V++ +   
Sbjct: 493 RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTVPATVDVVKVQSYDL 552

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL----------NDDPGIPIWIPQSKSRN 629
            + L +P V+ +    + F      K  +                +  I       K+R 
Sbjct: 553 IEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAELQIASSENLKKNRY 612

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-------SNTSNEKKSNQRTWY 682
             +S +    K+        +  V  + ++  L +                   +  ++ 
Sbjct: 613 TALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIVKKPQASSDDIGSYR 672

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            ++       +     + T        +A            +   +  K+L  E   P+ 
Sbjct: 673 ALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQISKELKTESLQPET 732

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQ 791
           L +      ++P  L+ S +    K              E         + G  +H++ +
Sbjct: 733 LHALYP--KDQPLRLSASALSEYFKNQYGYFIKYILGLQEEWTIHPDARSHGNFLHRIFE 790

Query: 792 VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM--------TTAMSC 843
            +  L E   ++F         +     E+++L    +  L    +           ++ 
Sbjct: 791 KV--LQEDTSRDFDQRLEVAIDETMRETEFESLYNESSESLFTRQLLLDTAKSTGQVLAQ 848

Query: 844 DSYSE------------VSVSGKINCPKKDIIISGRIDQISI--SQQNIFIFEYKTHHHV 889
            +  E                  I    + + + G++D+I    +  ++ + +YK+    
Sbjct: 849 SAGIETIGEETVFGNSKEPF--LILEDGRAVSVRGKVDRIDRLLADGSLGVVDYKSSETK 906

Query: 890 PQEIEHIPYTHIAQLSIYEKILKDS 914
               E       +QL  Y   +++ 
Sbjct: 907 F-SYEKFFNGLNSQLPTYLAAIQEL 930


>gi|226323115|ref|ZP_03798633.1| hypothetical protein COPCOM_00887 [Coprococcus comes ATCC 27758]
 gi|225208305|gb|EEG90659.1| hypothetical protein COPCOM_00887 [Coprococcus comes ATCC 27758]
          Length = 278

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 19/104 (18%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +R  +    +H+ IDE QD   IQ ++  +L E   +G           AVGD  Q+I
Sbjct: 159 PGVRKYMQSRYSHVFIDEYQDCGKIQHDIFLALCEMGIIG----------VAVGDVNQAI 208

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
           Y F    P+ +L                F   EL  + R    I
Sbjct: 209 YGFTNRFPRYLLELI---------GKDDFEHFELSKNHRCHPSI 243


>gi|322836796|ref|YP_004210710.1| helicase UvrD/REP [Acidobacterium sp. MP5ACTX9]
 gi|321165883|gb|ADW71583.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9]
          Length = 574

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 22/153 (14%)

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              +L++      I   + ++ + I+IDE QD       ++  L E          +   
Sbjct: 189 AYRVLREEP---RILKALARKFSQIVIDEAQDVGSSHIAIVELLAE----------AGSQ 235

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +  +GD  Q+IY F GA+            KR           EL ++ RS   I+ V +
Sbjct: 236 VTLIGDPNQAIYEFCGADGN--------YLKRYALRKGVLKK-ELTINRRSVPRIVAVAN 286

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
            +    ++A   +  S           G+   V
Sbjct: 287 SLSKRDDSAFRSTPASHNGAYFVRYDKGEESQV 319


>gi|229185029|ref|ZP_04312219.1| UvrD/Rep helicase [Bacillus cereus BGSC 6E1]
 gi|228598504|gb|EEK56134.1| UvrD/Rep helicase [Bacillus cereus BGSC 6E1]
          Length = 689

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEIVKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|291556730|emb|CBL33847.1| ATP-dependent nuclease, subunit B [Eubacterium siraeum V10Sc8a]
          Length = 1175

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 84/778 (10%), Positives = 198/778 (25%), Gaps = 140/778 (17%)

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI-IELPLSFRSTADILTVVDKVF 278
            DE  +IY             ++   +   + G  F + +    +    A++    D+  
Sbjct: 235 FDENTTIYIDG---FDSFSGAQQNFLRALADKGVNFVVALCTDEN---KAEVFATCDRT- 287

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                     +   T +  ++ R        L + + +              +Y  S+  
Sbjct: 288 ERLFERGNREDIKYTRLCGKAPRYKNGNLKALRDFLQTGVKDSKADSDGITMAYSSSVSG 347

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
           E      A  +   I  ++              +  DI V+                   
Sbjct: 348 E------ADFVCANIRKLVR---------CEGYRYSDIAVICAS---PAKYKDAVNSAAA 389

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS--------- 449
            Y + V  +    +++   ++   AL +   +     + +  ++S               
Sbjct: 390 RYDVPVFADLPVPISEKPMLRFFEALLKAADNPT-GTNILRYIRSGFVRLPSEKNNGKTV 448

Query: 450 ----EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
               ++          E    ++  +K  +  +    +  +   E I IA      +F  
Sbjct: 449 PMTLKERHLVEQHLMEEYAECWDLKRKKWDKPMPHITNASEQRVEEIRIATVTPLVEFAK 508

Query: 506 LILGAKKGRQ-------------------------------QFISRFGNEV---IDVLDE 531
            + G   GR+                               +++     E       + E
Sbjct: 509 SVCG-IGGRELVKKFTSFLFDKVDISAAIQGKCQDNSTRQLRYVKELTEEYNQLWRTVSE 567

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFL 590
            L        ++  +L E  + +      I  + + N  + V        +  E   VF+
Sbjct: 568 MLTSLYETLDDTPLTLAEFSALIHSCASRISISRTPNVLDSVLFGDPARTRSREVKAVFV 627

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +      F   + +   +  S +        I          S ++   K  T       
Sbjct: 628 MGAADGAFPDIYPEGNSVFTSDDVQRLAENDIELENDEARYSSAVLDAYKAMTLAGEK-- 685

Query: 651 LYVGMTRASDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           L++  T   +     I   +     +  N      +           + +  +  +   +
Sbjct: 686 LFITFTGEKENASEYIADIAKHFGAELINADNLDALYMTESVKSAEKQYVINSAQLTDGQ 745

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPSTIDTKGK 767
             A E      E  P   +     + +          S I   +     L+P+ I+    
Sbjct: 746 KKAVEAVLSENEKEPSSIDRIKAVMSNNSGNSDIHRISDIAPIVFPQTALSPTAIEKLNG 805

Query: 768 TNLE------SLLSDNQTFN-----RGLIIHKLL----QVI---------FTLPEHKRKN 803
                       LS +          G I+H ++    + +           + + + K+
Sbjct: 806 CKFAYFLRYGMNLSSSAGIAMNASNYGNIMHYIMKYCFEKLYDGARENGNPHVSDGRIKD 865

Query: 804 FITSYCTKNAK--LWPAKEYKNLLLSITRLLENPMM------TTAMSCDSYSEVSVSGKI 855
            I     +  +  L   +       ++   L              +    +       K+
Sbjct: 866 LIEQALAEYREKYLLTEENMSARFNTLYNALSVTAFYLIKYMAQELEKSRFVPSYFELKL 925

Query: 856 NCPKKD---------------------IIISGRIDQISI------SQQNIFIFEYKTH 886
              K +                     I + G +D++ I      S   I + +YKT 
Sbjct: 926 ESGKSENGFDISPYSFDIELADKSRQTITVGGTVDRVDIAYNDDKSGGQIRVIDYKTG 983


>gi|297738290|emb|CBI27491.3| unnamed protein product [Vitis vinifera]
          Length = 6100

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 62/497 (12%), Positives = 143/497 (28%), Gaps = 57/497 (11%)

Query: 114  FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
             +  ++   +     +   +   YE+ K +    D  DL+I+ +  L+       +    
Sbjct: 4725 LSEARVSTLSGQKREIIYDIFQDYEQMKMEKGEFDLADLVIDLHRRLRHERYMGDV---- 4780

Query: 174  DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS---FH 230
               ++ + IDEVQD ++ Q  + + +  +   G             GD  Q+I     F 
Sbjct: 4781 ---MDFVYIDEVQDLTMRQIALFKYICRNVNEG---------FVFSGDTAQTIARGIDFR 4828

Query: 231  GAEPK--RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              + +          +       GQ   I  L  +FR+ A +L +   V    E      
Sbjct: 4829 FQDIRSLFHNEFVMESSDGRKEKGQVSEIFHLSQNFRTHAGVLKLSQSVI---ELLYRFF 4885

Query: 289  EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
              S   +   +S I     V L                ++          E    +    
Sbjct: 4886 PQSVDILSPETSLIYGEAPVLLKPGKDENAIITMFGNSQNVGGNRFGFGAEQVILVRDDC 4945

Query: 349  IAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
                IS  IG   +     + + ++ +D  VL+     +  +    R             
Sbjct: 4946 ARKEISGYIGKQALVLTILECKGLEFQD--VLLYNFFGSSPLKNHWR------------- 4990

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF------SEDDIFKICTQRH 461
               ++ +++  +DL  L     S     +   +L S L         +   ++       
Sbjct: 4991 ---VIYEYMKEQDL--LDSTAPSPSFSQAKHNLLCSELKQLYVAITRTRQRLWICENTDE 5045

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
             ++ +++Y +K     +++    +   + ++  +           +L       +  +R 
Sbjct: 5046 LSKPMFDYWKKLCCVQVTQLDESLA--NAMLVASTPDEWKAMGMKLLREHHY--EMATRC 5101

Query: 522  GNEVIDVLDEFLNFT--LRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
                 D     L     L+        L    + ++              +         
Sbjct: 5102 FERAEDTYWARLAKAHGLKAAAEQKRDLNPDAAHVDLRKAAEIFEEIGQAHPAAKCYFEL 5161

Query: 580  AKGLESPVVFLVDTGSQ 596
             +   +  ++L   G  
Sbjct: 5162 NEYERAGRIYLEKCGES 5178



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/390 (14%), Positives = 123/390 (31%), Gaps = 54/390 (13%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
            +  ++   T         +   YE+ K K    D  DL+++ +  L+        RY+ 
Sbjct: 548 LSKARVSTLTREQRDRVYDIFLEYEKKKFKKGEYDLSDLVMDLHFRLRSE------RYEG 601

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFH 230
           D  I+ + IDEVQD ++ Q  + + ++++   G             GD  Q+I     F 
Sbjct: 602 DH-IDFVYIDEVQDLTMRQIALFKYVSKNIDEG---------FVFSGDTAQTIAKGVHFR 651

Query: 231 GAEPKRVLRE------KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
             + + +  +      +          G+   I  L  +FR+ A +L +   +  +  + 
Sbjct: 652 FQDIRHLFFKEFVLGSRTDATDEKKEKGKLSKIFHLSQNFRTHAGVLNLAQSIIDLLYHF 711

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
             L+ D                 ++      +      + +       F +       + 
Sbjct: 712 FPLTIDVLNPET-SLINGEAPVLIECGNFRDALPTIFGDSENAQENVGFGAEQVILVRND 770

Query: 345 LARRIAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
            A+     IS  +G   +     + + ++ +D  VL+     +       R L       
Sbjct: 771 SAK---EEISKYVGKKALVLTILECKGLEFRD--VLLCNFFGSCPFKHHWRVLYQFMN-K 824

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF------SEDDIFKIC 457
           +   D   L               I     D +   +L S L         +   ++   
Sbjct: 825 INLVDSKSL---------------ISFPSFDEAKHNVLCSELKQLYVAITRTRQRLWICD 869

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKY 487
                ++ ++EY +K +   +     ++  
Sbjct: 870 IIDEVSKPMFEYWEKLSLIQVRCLHDLVAQ 899



 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 89/272 (32%), Gaps = 28/272 (10%)

Query: 160  LKKRDVSAWIRYKIDQEI-----NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
            L + D       ++++       + + IDEVQD ++ Q  + + ++++   G        
Sbjct: 2231 LSREDYLLLSEARVNERYEGDHIDFVYIDEVQDLTMRQIALFKYVSKNIDEG-------- 2282

Query: 215  TLFAVGDEKQSIY---SFHGAEPKRVLRE------KRINQKRATNAGQKFSIIELPLSFR 265
                 GD  Q+I     F   + + +  +      +          G+   I  L  +FR
Sbjct: 2283 -FVFSGDTAQTIAKGVHFRFQDIRHLFFKEFVLGSRTDATDEKKEKGKLSKIFHLSQNFR 2341

Query: 266  STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
            + A +L +   +  +  +   L+ D                 ++      +      + +
Sbjct: 2342 THAGVLNLAQSIIDLLYHFFPLTIDELNPET-SLINGEAPVLIECGNFKDALSTIFGDSE 2400

Query: 326  QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN-GKKRVIQAKDILVLVRKRK 384
                 + F +       +  A+     IS  +G   +     + + ++ +D+L+      
Sbjct: 2401 NAKGNAGFGAEQVILVRNDSAK---EEISKYVGKKALVLTILECKGLEFRDVLLCNFFGF 2457

Query: 385  DTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
            D      L   LK  Y        R  + D++
Sbjct: 2458 DEAKHNVLCSELKQLYVAITRTRKRLWICDNI 2489


>gi|319778806|ref|YP_004129719.1| hypothetical protein TEQUI_0638 [Taylorella equigenitalis MCE9]
 gi|317108830|gb|ADU91576.1| hypothetical protein TEQUI_0638 [Taylorella equigenitalis MCE9]
          Length = 661

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 23/131 (17%)

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           D++ +  +LLK   +      ++      I IDE  DT+  Q+E +R L+          
Sbjct: 208 DIVHDLVELLKDNPI-----EELIDTYPLIAIDEYHDTNPKQFEFLRLLS---------- 252

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
           +      AVGD+ Q+I+ + G+  + +       +   T    + +   L  S+R   ++
Sbjct: 253 TRTNNFVAVGDKFQNIFEWRGSNTEVL------FESFLTEFKSECT--YLNHSYRYGQNL 304

Query: 271 LTVVDKVFSIP 281
                 V S P
Sbjct: 305 SAKAGNVISRP 315


>gi|153953621|ref|YP_001394386.1| hypothetical protein CKL_0996 [Clostridium kluyveri DSM 555]
 gi|219854243|ref|YP_002471365.1| hypothetical protein CKR_0900 [Clostridium kluyveri NBRC 12016]
 gi|251764558|sp|B9E0C6|ADDB_CLOK1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|146346502|gb|EDK33038.1| AddB [Clostridium kluyveri DSM 555]
 gi|219567967|dbj|BAH05951.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1150

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 69/684 (10%), Positives = 179/684 (26%), Gaps = 141/684 (20%)

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
           + + ++ KD+ V+     D      L + + N Y I    + +  +  +  +  +++   
Sbjct: 332 RDKNLRFKDMAVVT---GDLDEYENLIKAVFNQYDIPYFIDKKREIIHNQIVILIISAVE 388

Query: 427 FILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--------------------------R 460
            +       S    LK+ L +   DDI  +                             +
Sbjct: 389 ILAKNWSYESVFRYLKTGLLDLEFDDIDILENYVLANGIRGRQWLDTKPWSFKINYGNFK 448

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYI--------------HELIHIAQFCSPHDFFTL 506
            +     +      NC   K +  I  +               EL +        +    
Sbjct: 449 EDDSEEEQEYLNKINCIRDKVREPILKLSNDIKGKKKGRHICEELYNFLCELKIPEKVEE 508

Query: 507 ILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRA 564
           ++   +   +   +   +++ D++ + L+  +         ++     LE          
Sbjct: 509 LIIEFRNTDRLDKANEYSQIWDIVVDVLDQIVDVLGEQSFGMEIFNEALEIGFSQYEIGV 568

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                ++V +  +   K      +++      +F      +        D+         
Sbjct: 569 IPPALDQVLVSNITRIKSYNISALYIAGVNDGIFPVTISPEGIFTDQDRDELKQNGLEIA 628

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
             +R+                E   L+Y  +T     L +    +    K         M
Sbjct: 629 PNTRSRAF-------------EEQFLIYATLTIVDKYLTLTYSMSDEEGKAKRPSVVISM 675

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL---MDEQKIPK 741
           +   F   +    +   +                       R     +         + +
Sbjct: 676 IKKIFPKLQEKSNLLDASGYEGGIEAVNSPKVTFNMLISNIRRNLGHRENINSLWIDVYR 735

Query: 742 KLFSPIKNDINEPYIL---------------------------NPSTIDTKGKTNLESLL 774
                   +     +L                           + S ++   +      +
Sbjct: 736 WYREHEIWNKRLDTVLGAFYYNNEIKISDLVKIRRLYGKHLNMSVSRLEKFAQCPFGYFV 795

Query: 775 S-----------DNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKLW---- 816
                            + G  +H +L+             +N     C +N        
Sbjct: 796 QYGLKVKDRKMYSLSAPDLGSFMHGILERFSIGLKQKSLTWENVDERCCEENINDLVDNV 855

Query: 817 ----------PAKEYKNLLLSITRLLENPMM-------TTAMSCDSYSEV--------SV 851
                      +K+YK++   + + L   +               +Y  V         +
Sbjct: 856 LYDNPNSILNSSKKYKHVTDKLKKTLTRSVWLIAQHMKKGRFIPRAYELVFGEIGDFPPI 915

Query: 852 SGKINCPKKDIIISGRIDQISISQQNIF----IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           S +++   + + ++G++D++  ++++I     I +YK+      ++  + Y    QL IY
Sbjct: 916 SIELD-SGEKVSLTGKVDRVDTAKEDIITYIRIVDYKSG-TREFKLSDVYYGFQLQLLIY 973

Query: 908 EKILK----DSYPNKSLVCLLIYV 927
              +          KS+   L+Y 
Sbjct: 974 LDAILTEFDKMTKGKSIPAGLLYF 997


>gi|118478166|ref|YP_895317.1| UvrD/Rep helicase family protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417391|gb|ABK85810.1| UvrD/Rep helicase family protein [Bacillus thuringiensis str. Al
           Hakam]
          Length = 689

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEIVKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|87200014|ref|YP_497271.1| helicase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135695|gb|ABD26437.1| helicase [Novosphingobium aromaticivorans DSM 12444]
          Length = 993

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/598 (11%), Positives = 161/598 (26%), Gaps = 71/598 (11%)

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR-----------KDTPLI 389
                A  ++                     +A+ I VLVR+                 +
Sbjct: 324 PPEASAAWVSLEARERRLAGVRVMETAHPEEEAQAIAVLVREALKEPERRVAVITPDRSL 383

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                     + I         L    A + L+ L   +  +   +  + +L  PL    
Sbjct: 384 AARIVAHLGRWNIGADDTAGRPLPQTAAGRLLLQLAEVVAERAAPVPLLALLGHPLVQGG 443

Query: 450 EDDIFKICTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           E     +   R     +           I++  +    +F  +  +   +  +     P 
Sbjct: 444 EGRPVWLERVRQLDLVLRGPRPGPGLPAIRQAVDKTAKRFPALPDWWSGVEDLLFPLVPL 503

Query: 502 D-----FFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYS--SLQELISE 553
           +        L+   + G     +    +     L  F+        ++ +   + EL S 
Sbjct: 504 EGAVPLDMALVALVEAGEALCGTALWAQADGRSLAAFVERWRDAAGDAPAMVDVAELPSL 563

Query: 554 LEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           L      I        H  + I  +  A+   + +V         +         + P++
Sbjct: 564 LRDAMEEISVRPPWGGHPRLAIYGLLEARMSRADLVICGGLTEGTWPGSPAPDPLLAPAI 623

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
               GIP    +     + ++  +                        ++++      ++
Sbjct: 624 LRALGIPGAEFRIGLSAHDLAAALGA---------------------PEVVLSHARRDAS 662

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
                 R     +           +I+             +    HP+  P+   E  + 
Sbjct: 663 GPVIPSRF----LLRIHAMLGDQLRIEERAVELARALADADRIAPHPQPRPMPSAEQRRV 718

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
            +    + +    P +   +    L           +L+ + +D     +G  +H +L+ 
Sbjct: 719 PIAVTALDRLRGDPYQFYASAILGLR----------SLDPIDADPTPAWKGTAVHDVLKA 768

Query: 793 IFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
                 +P          +   +A  +    +K  L+     +E       ++ +    +
Sbjct: 769 WHESGGVPGQLVPLAERMFDEMSAHPFMRTMWKPRLVDALHWIEEET--DRLAGEGREVL 826

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           +V  K       I I GR D+I         + +YKT      ++  +      QL +
Sbjct: 827 AVERKGEIVVDGIRIHGRADRIDRLPDGTLAVVDYKTGKPPSGKM--VAEGFALQLGL 882


>gi|328545811|ref|YP_004305920.1| Double-strand break repair protein AddB [Polymorphum gilvum
           SL003B-26A1]
 gi|326415551|gb|ADZ72614.1| Double-strand break repair protein AddB [Polymorphum gilvum
           SL003B-26A1]
          Length = 1053

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/465 (9%), Positives = 107/465 (23%), Gaps = 51/465 (10%)

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
                  +Y+         + +  H ++ +  L                           
Sbjct: 515 HTPRWRKLYDADWVAVADLVDRLAHALEPLEALAEAKDALPVETLAAAHAEVLYRLAVDE 574

Query: 519 SRFGNE--VIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNE 571
           +    E    +  D    F     +   + L  + +E           T  R        
Sbjct: 575 AGTDAELYSGETGDALALFLAGLLEAGGAGLCIVPAEWPSVFAALMSGTAVRRRLPGDPR 634

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           ++I+    A+ L   +V L      V+  +      +   +  D G+     +  +  + 
Sbjct: 635 IQILGPMEARLLRPDLVVLGGLNEGVWPQRTRNDPWLNRPMKRDLGLDPPERRIGAAAHD 694

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            +  +                        ++++ +            R    +V      
Sbjct: 695 FAQGLGA---------------------RRVVLARAERADGAPTVASRWLQRLVTLVGPE 733

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            E     +    +     +        P + P  R     +         +        I
Sbjct: 734 IEAEMTARGRTYLRLAGLLDRPEGPVRPASRPEPRPALPARPKRLSVTEIERLVRDPYAI 793

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCT 810
               IL        G   ++ +       ++G +IH  L   +         + +     
Sbjct: 794 FARRIL--------GLEPVDPVGGVPGAADKGTLIHDALARFLTDWDGPYDDSAVRRLVE 845

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAM------SCDSYSEVSVS----GKINCPKK 860
               ++   +    +           +                E  +       +  P  
Sbjct: 846 IGETMFSPLDAFPAI-RALWWPRFERIARGFVAFEAARAAGLRERFLEIGGGVDLALPGI 904

Query: 861 DIIISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           +  ++GR D+I  +      + +YKT          +      QL
Sbjct: 905 EFRLTGRADRIDLLDDGTYAVIDYKTGQVPSGN--QVATLLAPQL 947


>gi|307571853|emb|CAR85032.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes L99]
          Length = 1163

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 92/748 (12%), Positives = 193/748 (25%), Gaps = 169/748 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       IA  I  ++              + +DI +L R   D  ++        
Sbjct: 313  QANNRRAEIEGIAREIRQLVLNG----------YRYRDIAILTRNLGDYDVLCETVMEA- 361

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I    + +  +  H  I+ + +    IL + + +  F  +     F+ +E      
Sbjct: 362  --YNIPTFIDKKRAMAKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNR 419

Query: 453  --------------IFKICTQRHETETVYE-----------------YIQKFANCGISKF 481
                          I        E + VY                  ++Q   N   S  
Sbjct: 420  RKADILENYVLENGIQNKWKWEKEGDWVYRKIRGLSTNVLPQTDEEIHMQSIINEMRSLI 479

Query: 482  QHVIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQF--------------ISRFGNEVI 526
             + +  +   +  A+            L      ++               ++R   +  
Sbjct: 480  VNPLATLELNLRKAKTGMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAW 539

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              +   L+  +         L      +              + ++V +  +  AK L+ 
Sbjct: 540  SSISALLDEFVEVLGEETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDM 599

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V+F +     V   +   K        D         +  ++NNI              
Sbjct: 600  KVIFAIGMNDGVMPLRQKDKGIFSDQDRDALRAEDSKLKPSAKNNIG------------- 646

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E + L Y  ++  SD+L +   +     K  ++  +   +   F+       +   + ++
Sbjct: 647  EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFNELNESVYLTDPSLLS 706

Query: 706  KDE-------------------------------WIAYEWSTHHPENTPLEREETIKQLM 734
              E                               W     S    E   +  ++ +  L 
Sbjct: 707  DAEQSSYIRSKQATLGLLTSQLQMYKRGYTLSSVWWDAYNSYFENEKESIMAKQVLSSLY 766

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
             E K      +  KN   E    + S ++                  E      Q  + G
Sbjct: 767  YENKTKPLQETTAKNLFGETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQLQAVDMG 826

Query: 784  LIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
             I H  ++ I    +       N     C + AKL        +   I   L +  M   
Sbjct: 827  EIFHGAMEWISAELKRNNLDWGNLTEEECKQMAKLAMTFLAPKIQHEIL--LSSKRMEYI 884

Query: 841  M------------------SCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
                                  ++  V +                     ++++ GRID+
Sbjct: 885  QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDR 944

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL 923
            I  +       + I +YK+  H    +  + Y    Q+  Y  I+         K+    
Sbjct: 945  IDMAEQDDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPA 1003

Query: 924  --LIYVSEPKVF----IIPQNKLNKAFA 945
              L +    +       +    + K   
Sbjct: 1004 GVLYFHMHNQYVQAEKELSDEAIAKELQ 1031


>gi|225864787|ref|YP_002750165.1| uvrD/Rep helicase family protein [Bacillus cereus 03BB102]
 gi|225789811|gb|ACO30028.1| uvrD/Rep helicase family protein [Bacillus cereus 03BB102]
          Length = 689

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEIVKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|254462109|ref|ZP_05075525.1| double-strand break repair protein AddB [Rhodobacterales bacterium
           HTCC2083]
 gi|206678698|gb|EDZ43185.1| double-strand break repair protein AddB [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 980

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/539 (9%), Positives = 136/539 (25%), Gaps = 64/539 (11%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            ++T       + + I    +    L      + L  +        D  + + +LK PL 
Sbjct: 360 RMLTRQVTAALDRWDIKPDDSAGLPLQLSPPGRFLRHVLELFTRPLDAEALLTLLKHPLT 419

Query: 447 NFSEDDIFKIC-------TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ--- 496
           +   +    +        + R             A    +K      +I  + +      
Sbjct: 420 HTGSERGTHLLLTRELELSIRKNGPAFPTKDSLLAWAKDNKLDGAKSWIDWVANTFCGHL 479

Query: 497 ----------FCSPHDFFTLI------LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
                               I      +G     ++   R        L   L+      
Sbjct: 480 CDGPQNAVELAERHIGLAERISQGAQDVGTGDLWKEGAGREAMSQWVALRSNLDALPDLS 539

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              Y+ L   +           R   A H  V I     A+   + ++ L       +  
Sbjct: 540 TRDYADLFGGV-----LSRGEVRNPDAGHPNVLIWGTLEARVQGADLLILAGLNEGSWPE 594

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                  +   +  D G+ +   +     +     I                     A+ 
Sbjct: 595 APSPDPWLNRRMRADAGLLLPERRIGLSAHDFQQAI---------------------AAP 633

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           ++ + +   + + +    R    +        ++   + +     +              
Sbjct: 634 EVWLTRAQRSDDAQTVPSRWLNRLTNLMNGLPDQDGPVTIEQMQTRGNDWLERAHQLETP 693

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
                 +    +   E +  +   + IK  + +PY +    +       L+SL+      
Sbjct: 694 IGANPAKRPSPKPAIEVRPNQLSVTEIKTLVRDPYEIYAKHV--LRLAPLDSLVKTADAR 751

Query: 781 NRGLIIHKLLQVIFTL-----PEHKRKNFITSYCTKNAKLWPAK--EYKNLLLSITRLLE 833
            RG+ +H++ +                         +     A+      +       + 
Sbjct: 752 LRGIAVHQVFEDFVRSWDKGETAADLMAHAKRIFDSDVDWPSARLMWAARIARLADDFVA 811

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQ 891
                  ++  S  EV     +   +    ++ + D+I + +    ++++YKT     +
Sbjct: 812 EERERQKIAMSSRLEVKGESTLP--ELGFTLTVKADRIDLDERGGAYLYDYKTGAIPSK 868


>gi|209551531|ref|YP_002283448.1| double-strand break repair protein AddB [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537287|gb|ACI57222.1| double-strand break repair protein AddB [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 1064

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/409 (10%), Positives = 93/409 (22%), Gaps = 48/409 (11%)

Query: 517 FISRFGNEVIDVLDEFL-NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               +  E  D L   L      N Q      Q +            +  + +H  + I 
Sbjct: 584 LADLWSGEAGDALAALLGEVIDTNGQMEADGPQWIDIMAALAAGHALKPRALSHPRLFIF 643

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+      + L       +  +      I   +  + G+     +     +     
Sbjct: 644 GTLEARLQSVDTMILGGLNEGTWPGQTANNPFIPRMMKTEIGLEPPERRIGQLAHDFE-- 701

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                              M   +  LI  +     +      R    ++  +    E  
Sbjct: 702 -------------------MANGTRHLIYSRALRQGSTPTVASRWLQRLLALAGETFEAE 742

Query: 696 KKIKLTNSIN-KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            K +    +         E        +P              ++ +    P        
Sbjct: 743 LKGRGNRFLQWAGLIDRGEAQAPAQRPSPKPPLTLQPTSYSFSEVGRLRRDPYAIYARRI 802

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP----EHKRKNFITSYC- 809
             L+P                D     RG + H ++                  +     
Sbjct: 803 LRLDPVDA----------FNRDPGAAERGTLYHTIIDRFIREAHVAGTPDAAAAMERILS 852

Query: 810 -----TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                 +      A             L+           + +EV   G +     +I +
Sbjct: 853 ELFDMEQLPPHIDAVWRPRFRAVAGAFLDWEAGRRPGIRKTLTEVR--GGVELEAINIRL 910

Query: 865 SGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           +G  D+I ++      I +YKT ++              QL++    L+
Sbjct: 911 NGVADRIDVTGPHAADIIDYKTGYNP--SPAQARVLLDPQLALEAAALR 957


>gi|65320107|ref|ZP_00393066.1| COG3973: Superfamily I DNA and RNA helicases [Bacillus anthracis
           str. A2012]
          Length = 251

 Score = 73.8 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 20  EIGQKFHHVVIDEAQDFSXFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 68

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 69  --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 118

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 119 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 177

Query: 352 TISN 355
            I  
Sbjct: 178 VIEA 181


>gi|218459114|ref|ZP_03499205.1| DNA helicase II protein [Rhizobium etli Kim 5]
          Length = 233

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 78/268 (29%), Gaps = 45/268 (16%)

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
            ++ L E +      E         +   LE     +    + N + V IMT+H+AKGLE
Sbjct: 4   RLENLKELIRSMESFES--------MRGFLEHVSLVMDAETNENLDAVSIMTLHSAKGLE 55

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              VFL      +F H+                                       ++  
Sbjct: 56  FDTVFLPGWEEGLFPHQRSLD--------------------------------ESGRAGL 83

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEK---KSNQRTWYDMVYDSFHNDERVKKIKLT 701
           EE  RL YVG+TRA  +  I   SN         +    + D + ++      +++    
Sbjct: 84  EEERRLAYVGITRAKRRCHIWFVSNRRIHGLWQSTLPSRFLDELPETHVEVAEMEQSYGG 143

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN-PS 760
                     ++ +     +      +  +    +                  Y  + P 
Sbjct: 144 YGRGGYGQSRFDKAEPFANSYSTPGWKRAQANKTDATRDNWGTRSGHAVERIGYGESGPK 203

Query: 761 TIDTKGKTNLESLLSDNQTFNRG-LIIH 787
                G+   +S  S+   F  G  + H
Sbjct: 204 GRTIDGELVAKSTSSEPSRFTLGDRVFH 231


>gi|47567625|ref|ZP_00238335.1| superfamily I DNA helicase [Bacillus cereus G9241]
 gi|47555602|gb|EAL13943.1| superfamily I DNA helicase [Bacillus cereus G9241]
          Length = 673

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|284166523|ref|YP_003404802.1| UvrD/REP helicase [Haloterrigena turkmenica DSM 5511]
 gi|284016178|gb|ADB62129.1| UvrD/REP helicase [Haloterrigena turkmenica DSM 5511]
          Length = 624

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 34/171 (19%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +   K +   + F D++                   +   ++ ++IDE QD + +Q+
Sbjct: 191 IRAWRSYKGEEGKIGFADMLERVAQ------------RSLLPSVDFLVIDEFQDITTLQY 238

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           +V                  R +   GD+ Q +YS+ GA+P  +L              Q
Sbjct: 239 DVYEEW----------KPHMRQVLIAGDDDQVVYSWQGADPALLLD------------EQ 276

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
               + LP S+R  +++L  V+K     E  Q              +R   
Sbjct: 277 VDEDVILPNSYRLPSNVLNAVNKEIRHIETRQDKDLKPRKEGGAVEARANA 327


>gi|229196983|ref|ZP_04323723.1| UvrD/Rep helicase [Bacillus cereus m1293]
 gi|228586540|gb|EEK44618.1| UvrD/Rep helicase [Bacillus cereus m1293]
          Length = 691

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|148988509|ref|ZP_01819956.1| hypothetical protein CGSSp6BS73_06765 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147926190|gb|EDK77264.1| hypothetical protein CGSSp6BS73_06765 [Streptococcus pneumoniae
           SP6-BS73]
          Length = 512

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 20/122 (16%)

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
             D+LK  D ++     I  + N + IDE QD      ++   L  +             
Sbjct: 150 ALDILKTIDSAS---EYIKYKFNTLYIDEFQDCDQSMNDLFLYLKNEL---------GIP 197

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           LF VGD+KQSIY + GA PK +    +            F       +FRS   I+    
Sbjct: 198 LFIVGDDKQSIYQWRGASPKYINNLWK--------NKNDFRKKRFIGNFRSLPRIVDFSL 249

Query: 276 KV 277
            +
Sbjct: 250 AL 251


>gi|221145759|gb|ACL99766.1| UvrD-like protein [Plasmodium falciparum]
          Length = 693

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 19/100 (19%)

Query: 133 LNAHYEEA-KKKNCVL-DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
               Y++  KK   +  DF+DL+I T  L+K     A IR KI +E N++  DE QDT+ 
Sbjct: 388 FYEEYKKIFKKAKNIYYDFDDLLIETYRLMKDN---ADIRNKILEEWNYVFCDEFQDTNT 444

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            Q+ +++            H+ P TL       QSIY+  
Sbjct: 445 TQFNILQFFV--------NHNVPSTL------DQSIYTSG 470



 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE+ D    Q     +  E     K  +   R+L  +GD+ QSIYSF GA      +  +
Sbjct: 618 DEILDIENEQTFFNNNCNEKNKTKKKCNLKDRSLTVIGDDDQSIYSFRGAHINVFYKFLK 677

Query: 243 INQKRATNAGQKFSIIELPLSFRST 267
                         + +L  +FRST
Sbjct: 678 D---------CNCLLFKLNNNFRST 693


>gi|124506203|ref|XP_001351699.1| helicase, belonging to UvrD family, putative [Plasmodium falciparum
           3D7]
 gi|23504627|emb|CAD51506.1| helicase, belonging to UvrD family, putative [Plasmodium falciparum
           3D7]
          Length = 1441

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 19/100 (19%)

Query: 133 LNAHYEEA-KKKNCVL-DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
               Y++  KK   +  DF+DL+I T  L+K     A IR KI +E N++  DE QDT+ 
Sbjct: 422 FYEEYKKIFKKAKNIYYDFDDLLIETYRLMKDN---ADIRNKILEEWNYVFCDEFQDTNT 478

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            Q+ +++            H+ P TL       QSIY+  
Sbjct: 479 TQFNILQFFV--------NHNVPSTL------DQSIYTSG 504



 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE+ D    Q     +  E     K  +   R+L  +GD+ QSIYSF GA      +  +
Sbjct: 652 DEILDIENEQTFFNNNCNEKNKTKKKCNLKDRSLTVIGDDDQSIYSFRGAHINVFYKFLK 711

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
                         + +L  +FRST +I+ V   +     
Sbjct: 712 D---------CNCLLFKLNNNFRSTREIVRVSQNLIINNR 742


>gi|311029444|ref|ZP_07707534.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus sp.
           m3-13]
          Length = 1171

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 81/695 (11%), Positives = 190/695 (27%), Gaps = 155/695 (22%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  IA  I +++           +  + KDI V+VR          L   +  DY 
Sbjct: 322 RRAEMEGIAREIVSLVRD---------KDNRYKDIAVIVRN---AESYIDLVNTVFKDYD 369

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I    + +  +  H  ++ L +    I       S    +K+  F   + DI ++  +  
Sbjct: 370 IPFFVDQKRTMLHHPLVELLRSSLEVISRNWRYESVFRCVKTDFFYSLDQDINEMREKTD 429

Query: 462 ETETVYEYIQKFANCG----ISKFQHVI------------------KYIHELIHI----- 494
           + E          +        K++                     K I+EL  +     
Sbjct: 430 KLENYCLSYGIQGHRWTATEPWKYRRFFSVDTEGPYVQTDEEVAYEKEINELRTMIVEPL 489

Query: 495 --------------AQFCSPHDFFTLILGAKKGRQQFI----------SRFGNEVIDVLD 530
                         A   + +++   +   +K   +            ++   +V   + 
Sbjct: 490 HMLEKRWKKAKTIDAYCKALYEYMEDLKIPQKLEARMKKAEEEGNLSSAKENEQVWKAII 549

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVF 589
           + L+  +        SL   +  +E    +++ +      ++V +     ++  +    F
Sbjct: 550 QMLDQMVELIGEHPISLSMFMKMVESGLESLRFSLVPPAIDQVIVANFDLSRLTDIKHSF 609

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           ++     V   K   +  I     +                     +         + + 
Sbjct: 610 VIGVNDGVIPAKIKDEGFISEEERELLSNYGME-------------LAPTSLERLLDEHF 656

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           L+Y      S  L I         K     ++   + + F + E    +     +  +E 
Sbjct: 657 LVYTSFLSPSHHLYISYALADEEGKTLLPSSYIKRIKEMFPSLEEKLLLNEPAELTSEEQ 716

Query: 710 IAYEW-STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------ 756
           + Y    +    N  ++ +  +K+   E        + ++++  +               
Sbjct: 717 LRYIHTPSTTLSNLAVQLQTWMKKYPVEPIWWDVYNTLLESEEWQDKTEQVLRSLFYKNE 776

Query: 757 ------------------LNPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIH 787
                              + S ++           S             +  + G + H
Sbjct: 777 AKKLKQKVSRELYGNFMEASVSRMEKFSACAFSHFASHGLKLKERKIYRLEAPDIGQLFH 836

Query: 788 KLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT----------RLLEN 834
             L+ I        +  KN     C   AK         L   I           R LE 
Sbjct: 837 AALKHISDKLRQSGNDWKNLTKQDCEVLAKEAVHILAPKLQGEILLSSNRFHYIKRKLET 896

Query: 835 --PMMTTAMSCDSYS----EVSVSGKINCPKK------------DIIISGRIDQISISQQ 876
                +  +S  S +     V +       ++             + + GRID++  ++ 
Sbjct: 897 IITRASQILSDHSKASKFTPVGLELGFGKQEELPPIQINLPNGVTMELVGRIDRVDKAEG 956

Query: 877 N----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           +    + I +YK+  +   ++  + Y    Q+  Y
Sbjct: 957 SRGLLLRIIDYKSS-NKALDLTEVYYGLALQMLTY 990


>gi|328951962|ref|YP_004369296.1| ATP-dependent nuclease subunit B [Desulfobacca acetoxidans DSM
           11109]
 gi|328452286|gb|AEB08115.1| ATP-dependent nuclease subunit B [Desulfobacca acetoxidans DSM
           11109]
          Length = 895

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 75/539 (13%), Positives = 160/539 (29%), Gaps = 69/539 (12%)

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDD----IFKICTQRHET 463
              L +       +   RF    E        L SP +  FS        + +  +R   
Sbjct: 293 GDCLAETQIFHAALLPLRFRTYGELREDLAAWLLSPYYQEFSPQQAAILQWDLIWRRSRI 352

Query: 464 ETVYEYIQKFANC--GISKFQHVIKYIHELIHIAQFCSPHDFFTL-----ILGAKKGRQQ 516
              +  +++ A+          ++  +  +I                   +        +
Sbjct: 353 AYDWPALRRAASEADRTGLEPALLSRLDRIISCLPLDPAPAGIWTKRLQAVWEQSGFPGR 412

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIM 575
             S         L E L      E +S  S   LI  L      I           V+I+
Sbjct: 413 L-SPLEERSYQHLQELLRDLTALEGSSELSGSTLIEWLNLGARQIDLPGEGTQEAGVQIL 471

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            +   +GL+   VF +     VF                 P  P+ +  +  R  ++   
Sbjct: 472 GLLELRGLDFDAVFCMGLNMGVF---------------PPPPRPLPLLTASERVLVLGGT 516

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
            +  ++  ++ Y  L  V       +LI  +      E+++       ++  ++  +   
Sbjct: 517 YQGQQQFAEQAYRNLQAVA-----PRLICTRPLVQQEEEQTPS----FLIDQTWRQETCS 567

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
              +   +  +   +   +         L +E T  +L  E  +   + +     +  P 
Sbjct: 568 PLSRPHPAWLRSPAVRVVFQAPASGGAILNKELTSVKLPSEISLSALMTA-----LACPC 622

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL-------PEHKRKNFITSY 808
               S +   G   L  + S      RG  +H++L+             +H  +    + 
Sbjct: 623 QFYFSVL--LGLQELPEIDSGLPPPERGSALHQVLERFTRRFSQAIQESDHWNEAAALNC 680

Query: 809 CTKNAKLW--PAKEYKNLLLSITRLLENP--MMTTAMS------CDSYS----EVSVSGK 854
                + +   AK   +    + R L     ++   +        + +     E   +G 
Sbjct: 681 LQIVMEEFQSWAKADPHWQAELERWLAPEGGVLREWLQQERQHYENGWRWLVMEAPFAG- 739

Query: 855 INCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           +  P     I GRID+I    +Q + +++YK+ +   Q           QL  Y   ++
Sbjct: 740 LRLPDWPGSIRGRIDRIDWHKEQGLMLWDYKSGNVPKQRDLEE-DRSQFQLPGYLLAVQ 797


>gi|297584274|ref|YP_003700054.1| ATP-dependent nuclease subunit B [Bacillus selenitireducens MLS10]
 gi|297142731|gb|ADH99488.1| ATP-dependent nuclease subunit B [Bacillus selenitireducens MLS10]
          Length = 1157

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 73/694 (10%), Positives = 173/694 (24%), Gaps = 157/694 (22%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R IA  I  ++  +           + KD  VL R   D      L   +  + +I V  
Sbjct: 319 RFIAREIRRLVRQE---------NYRYKDFAVLSRNPDDYR---DLIEHIFEEEQIPVFV 366

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--------------------- 445
           + +     H  I+ + +L   +         +  LK+ L                     
Sbjct: 367 DAKRSAIHHPLIEFVRSLLDIVSKNWRYDDVIRCLKTELTFPIDQSVTREHLDTFENITL 426

Query: 446 -FNFSEDDIFKICTQRHETETVYEY-----------IQKFANCGISKFQHVIKYI----- 488
               +    +         +                +       +         I     
Sbjct: 427 ALGLNGYQWYDYEQWNKRLQFYRAAKEGEEDHTITLMHDLHKIMVDPLIQFHDKITSQNT 486

Query: 489 -----HELIHIAQFCSPHDFFTLILGAKKGRQQFI-SRFGNEVIDVLDEFLNFTLRNEQN 542
                  L ++    S  +           + +   +R  +++   L    +        
Sbjct: 487 VNSIIEALFNLLVALSVPEKLASFRDQALDKGRLQEARDHDQIWKELISIFDQASEACGQ 546

Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              +     + L+    +I  +      ++V   ++ T++  +    FL+     V    
Sbjct: 547 DKMNPITFNNMLDTGLESISYSIIPPALDQVVAASMATSRLSDISCTFLIGANDGVIPMP 606

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
                                 + +         +    +        L+Y   T   D+
Sbjct: 607 -------------AEESAFMSDRERVTLLESGHELAPAAERQLLNEQYLVYQAQTSPKDR 653

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           LII    +    K        + V + F   +    ++    ++  +    ++    PE 
Sbjct: 654 LIISYLLSDDEGKAKQPSIILNHVKEMFPALKTEIAVESPADLDISD--EDDYFISSPEG 711

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY-------------------------- 755
           T     E +++      +P   +S     ++E                            
Sbjct: 712 TQSFLTERLQRWKRGYPLPDIWWSVYNWYMSERTYAPTVRTSLTSLFYDNNPGSLSKTAA 771

Query: 756 --------ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLL-QVIFT 795
                     + S ++                  E         + G++ H  L ++   
Sbjct: 772 RGLYGQKMTASVSRLEQYYSCAFKQFANYGLRLREREYFRLDAPDIGILFHDALKELTAN 831

Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI-TRLLENP-MMTTAMS----------- 842
           L +  R    T      A        +NL   I   +L++   +   +S           
Sbjct: 832 LKQEGR--SFTELSEPEAVRRSKNIVENLAPKINRNILKSSFRLRYILSKLEQVVIRAAM 889

Query: 843 ---CDSYS----EVSVSGKIN------------CPKKDIIISGRIDQI--SISQQNIFI- 880
                +        +V                      + ++GRID++  + + +  +I 
Sbjct: 890 ILMEQAKRTGFQPEAVELGFGTGSDLPPLSYTLDDGTTVELAGRIDRVDSANTPEGFYIR 949

Query: 881 -FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             +YK+       +  + Y    Q+ +Y   +  
Sbjct: 950 VIDYKSSKT-DLSLSDVYYGLAMQMLVYLDAIMK 982


>gi|222096311|ref|YP_002530368.1| uvrd/rep helicase family protein [Bacillus cereus Q1]
 gi|221240369|gb|ACM13079.1| UvrD/Rep helicase family protein [Bacillus cereus Q1]
          Length = 689

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|163858600|ref|YP_001632898.1| hypothetical protein Bpet4282 [Bordetella petrii DSM 12804]
 gi|163262328|emb|CAP44631.1| hypothetical protein predicted by Glimmer/Critica [Bordetella
           petrii]
          Length = 550

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 75/231 (32%), Gaps = 32/231 (13%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK-----KSPDLKEK 99
            ++K    ++ A         F   +   + +     K +IT +  +             
Sbjct: 12  ALVKARDEIRSAKLLSGQRILFLSFARPTVARVLEKAKELITADDLRLLDVNTYHGFAWS 71

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK---KNCVLDFEDLIINT 156
           + +S    +            + +      AK    H++E  +   +  +L F+     T
Sbjct: 72  VLRSHGYLLSNGKPLQLLPPPEGSARLAHFAKE--QHHQEKLRLFHEEGLLHFDLFAQLT 129

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +LL++    A I          +++DE QDT+  +W ++R L                +
Sbjct: 130 AELLRRSRRLAGI---YTATYPILVVDEFQDTNADEWAMVREL-----------GRGCRI 175

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
            A+ D  Q IY F GA+P+R+                         + RS 
Sbjct: 176 IALADPDQRIYEFRGADPQRLKEFVDQFDPLPVEFEG--------ENHRSA 218


>gi|95929584|ref|ZP_01312326.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
 gi|95134281|gb|EAT15938.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
          Length = 881

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 78/624 (12%), Positives = 176/624 (28%), Gaps = 77/624 (12%)

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT---ISNMIGTDTIFSNGKKRV 370
           + +   ++ NP      +  D   +  +A+  AR+       I  ++  +     G+ + 
Sbjct: 198 IENLAAARVNPVAFDAVAAADESEELLAAARWARQCLEQQVGIVAVVVPELERLQGEVQT 257

Query: 371 IQAKDI-LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF-I 428
           I ++++       R           +   D  +         L D L    L  L R   
Sbjct: 258 IFSRELSRSAYPDRVPMDTFNMSLGYPLADQGMVAAALTLLQLQDSLDFDQLSYLLRCPW 317

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            +   D      L         D++ ++      + +   Y  +          H+++ +
Sbjct: 318 FAGGIDEWQQRALFE--RQLRADNVLRL------SVSDLLYRLRHQPQAPRGMLHLVEQL 369

Query: 489 HELIHIAQFCSPHDFFTLI---LGAKKGR-QQFISRFGNEVIDVLDE--FLNFTLRNEQN 542
                     +P D+   +   L          +   G +V     +            +
Sbjct: 370 QRWQGEHDKIAPADWVEHLNSFLQQIGWPGDASLDSRGYQVFAAWQDKVLTPVARLGVVS 429

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           +  +  +L+S + +    I     A  + ++I+ +    GL    ++L   G QVF    
Sbjct: 430 ATMTPGQLVSWVCRLSREILFQPKAQDHRLQIIGLLETAGLTFDALWLCGAGEQVFPGGL 489

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                +  +L     +P                        + +Y RLL   +  A+ Q+
Sbjct: 490 SFNPFLPVALQKQSQMPHSDLF------------------HEADYARLLLERLQHAAQQM 531

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
           +I    N              + +      + V            +W             
Sbjct: 532 VISYAQNKEERPCRCSPYLSQLPWQQCQETDGV------------DWNGVSLEAIDDCRA 579

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
           P      +++ +       K  +         Y +        G   L+       +  R
Sbjct: 580 PSLSSAQLEEPLSGGTGLLKEQAQCPFKAFIHYRV--------GVRALDVPQPGLTSRRR 631

Query: 783 GLIIHKLLQV-----------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
           G ++H++LQ            +       R+               A   + LL    + 
Sbjct: 632 GDLLHRVLQQVWQCLGSHAGLLDYDDTALRELIAEQVVAVLDGTRFAGHERALLAVEKQR 691

Query: 832 LENPMMTTAMSCDSYSE---VSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHH 887
           LE+ ++               SV  +       + ++   D+I ++    + + +YKT  
Sbjct: 692 LESLVLEWLDVERQREPFNVQSVEERQQLQVGPLRLNTIPDRIDMTADGRMIVLDYKTGQ 751

Query: 888 HVPQEI--EHIPYTHIAQLSIYEK 909
               ++  E +      QL +Y  
Sbjct: 752 ISVGDLVGEVLLE---PQLPVYAL 772


>gi|326335404|ref|ZP_08201591.1| hypothetical protein HMPREF9071_1057 [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325692170|gb|EGD34122.1| hypothetical protein HMPREF9071_1057 [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 911

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 72/572 (12%), Positives = 166/572 (29%), Gaps = 103/572 (18%)

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF--NFSEDDIFKIC 457
           +K+ +     + L          +  +  +S +     V  L    F  N   +D  K  
Sbjct: 317 HKLPINITMGYPLQQTPLHDLFSSFFKLYISGKWYHKEVKALLMQPFLSNLFSEDYKKNT 376

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                   +    +K     +     ++  I  +    +  S       +L      ++ 
Sbjct: 377 ISFINEYNLIYIYKKHLEKYVKDADKIL--IDLIFDDTKNISVSRLIENVLRFLFIIRES 434

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQ-----------NSYSSLQELISELEQYPPTIKRAHS 566
           + +  +     L+   NF     Q            +  SL  L ++L        R   
Sbjct: 435 LEKDESSNKLNLEYLYNFYELFNQLDFLQRKYGFIENIKSLYYLYNDLLAKQKLNFR--G 492

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                ++IM +  A+ ++   V +      +F   + K   I   +  +  +P +  +  
Sbjct: 493 EPLQGLQIMGILEAQNIQFKNVLVTSLNEGIFPKGNSKNSLIPFDVRTNLELPTYKQEDY 552

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                   +++H  K+       L Y   T                +     R    +  
Sbjct: 553 VYTYYFYRILQHTNKAI------LFYNTDT-------------EGLKGSEKSRFILQLFS 593

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                                E +      +  ++    +++   +      +   + +P
Sbjct: 594 ALRIEPTIKSPEVKIVEHQPIEVLKNREIINKLKDIATGKDKKHGRGFSSSALTSYIMNP 653

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI------------- 793
           I     +        +D K +  +E ++ +    + G IIH++LQ++             
Sbjct: 654 IIFYQQQI-------LDVKDEKEVEEIVEN---RSFGDIIHRVLQILYTPYIGKILFKEN 703

Query: 794 --------------FTLPEHKRKNF------ITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
                           +   K ++       I     +    + + + KN+   I  LL 
Sbjct: 704 IKQMREKVSLVVRKIFIEYQKNEDITGKNVFILKTIEEYIHKFLSVDEKNVSEQIVELL- 762

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
                  +     +EV    + + P   I+ +G +D++      I+I +YKT     ++I
Sbjct: 763 ------FLEKKILTEVRYE-EFDFP---ILYNGTLDRVEKRNGAIYIVDYKTGRVEQRQI 812

Query: 894 EHIPYTH------------IAQLSIYEKILKD 913
             +   H              QL +Y  +L+ 
Sbjct: 813 -TLTEKHWEKLIIDFKYSKAFQLLMYAYLLRK 843


>gi|228985906|ref|ZP_04146054.1| UvrD/Rep helicase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228773835|gb|EEM22253.1| UvrD/Rep helicase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 689

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|21244660|ref|NP_644242.1| DNA helicase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110346|gb|AAM38778.1| DNA helicase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 609

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 54/151 (35%), Gaps = 23/151 (15%)

Query: 151 DLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +L     DL L+++     +  +      HILIDE QD  ++   +I  L++        
Sbjct: 203 ELARYWADLTLREQPEILRVLAR---RYPHILIDEAQDIGILHQLIIERLSQ-------- 251

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +   +  +GD  Q IY F GA    +            ++    +   L  ++RS   
Sbjct: 252 --AGSQISLIGDPNQGIYEFMGATGSFLSS---------YHSKPGVAPAALTRNYRSVPA 300

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           +L + + + +  +     +  +         
Sbjct: 301 VLDLANAISARTDEPDRHAPLTLHGAYFVPY 331


>gi|160899597|ref|YP_001565179.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
 gi|160365181|gb|ABX36794.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
          Length = 550

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 75/231 (32%), Gaps = 32/231 (13%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK-----KSPDLKEK 99
            ++K    ++ A         F   +   + +     K +IT +  +             
Sbjct: 12  ALVKARDEIRSAKLLSGQRILFLSFARPTVARVLEKAKELITADDLRLLDVNTYHGFAWS 71

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKK---KNCVLDFEDLIINT 156
           + +S    +            + +      AK    H++E  +   +  +L F+     T
Sbjct: 72  VLRSHGYLLSNGKPLQLLPPPEGSARLAHFAKE--QHHQEKLRLFHEEGLLHFDLFAQLT 129

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +LL++    A I          +++DE QDT+  +W ++R L                +
Sbjct: 130 AELLRRSRRLAGI---YTATYPILVVDEFQDTNADEWAMVREL-----------GRGCRI 175

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
            A+ D  Q IY F GA+P+R+                         + RS 
Sbjct: 176 IALADPDQRIYEFRGADPQRLKEFVDQFDPLPVEFEG--------ENHRSA 218


>gi|324326780|gb|ADY22040.1| UvrD/Rep helicase family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 691

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|315637851|ref|ZP_07893041.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
 gi|315482092|gb|EFU72706.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
          Length = 794

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/579 (12%), Positives = 173/579 (29%), Gaps = 71/579 (12%)

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           ++  +++        +Q  ++ +L         I+   R       I VV        D 
Sbjct: 223 LLKKESLKPKSAFVKVQQFELRILQVA-FVLDEISSFIRAGLKAEDI-VVITPNESFCDF 280

Query: 416 LAIKDLMALGRFILSQEDDLS-FVCMLKSPLFNFSEDDI-FKICTQRHETETVYEYIQKF 473
           L + D   +  +        S F   L+S   + + DD+ F            ++     
Sbjct: 281 LRLLDQNNMLNYASGVSIKESLFYQRLRSLYESANLDDLHFDDNKDYFNEAQNFDLHNSL 340

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
            +     F+   ++  +    + F +        L  +    +         I  L    
Sbjct: 341 LHYFELDFKEFKEHFTKECEFSYFET---LIKQFLANENSELRLFVEKELFFIKNL--LT 395

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           N  L  +Q     L+    ++        +        V  M +  ++GL    V +VD 
Sbjct: 396 NQKLNLKQI----LELFFIQISS-----FKQSYVGGGAVTAMGILESRGLSFDGVIVVDF 446

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              +   + + ++ +   +    G+  +  +   +                    R  Y 
Sbjct: 447 NEDLIPKRSVNELFLNNEVRTKAGLISYEKRENLQ--------------------RFYYE 486

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            + + + ++ IC   N    +          +  +    ++     L  +    +     
Sbjct: 487 QLFKNAKKISICYVENEEKSRSRLLEDLEFRLDLTKEFSQKAYLNALKLNYKAKQIKLEP 546

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
                 ++       +  +L    +  +  F      + EP  L     +   +  L++L
Sbjct: 547 PQAPKLKHNLFATPLSYSRLTLFLESKRTYFYKYIKHLKEPRELKMDIKEQNDRKRLKNL 606

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK--LWPAKEYKNLLLSITRL 831
                    G+ IH++L++ +   +   +   TS   K  +     A + + L +     
Sbjct: 607 ---------GIFIHRILELYYKHYDFFDEKLFTSLLEKEGQKEGLDALDLELLKIKFKEF 657

Query: 832 LENPMMTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISISQQNI--FIFEYKTH 886
            +            +    E+++   I    + I ++G+ID+I  S +     I +YK+ 
Sbjct: 658 AKKE--QERFKQGYHIKHLELNMDKSIILEGQRIELTGKIDRID-SNERFGELILDYKSG 714

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
               +           QL+ Y+ +      +++      
Sbjct: 715 KIPEKSY---------QLAFYKLLY-----DENAHAAFY 739


>gi|229161682|ref|ZP_04289662.1| UvrD/Rep helicase [Bacillus cereus R309803]
 gi|228621927|gb|EEK78773.1| UvrD/Rep helicase [Bacillus cereus R309803]
          Length = 689

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +     K + Q+            EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 --IEDWSAFKEVFQETGY--------FELTRSYRSTKEIIEFANEIIKNAEIPVGLATPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++   +    +           +  D   +       A     
Sbjct: 557 FRSGEDVKVIGTEDQFTEIVNTLQQLQNEDVKTIAVIGRT-DDECREMYEKLTNAGLKVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|192824065|ref|YP_001994527.1| gp69 [Mycobacterium phage KBG]
 gi|190610295|gb|ACE79817.1| gp69 [Mycobacterium phage KBG]
          Length = 304

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 64/219 (29%), Gaps = 55/219 (25%)

Query: 753 EPYILNPSTIDTKGKTNLESLLSD-------NQT-FNRGLIIHKLLQV-----IFTLP-- 797
           E    + S + +  K  +   L+              +G  +H + +      +   P  
Sbjct: 41  EKKPRSVSQLSSFEKCPMAYKLARIDKVWRRPAAWLQQGTAVHAVAEHYMLRRLGFEPGG 100

Query: 798 EHKRKNFITSYCTKNAKLWPA--------------------KEYKNL----LLSITRLLE 833
              R+     +     +                         + +      L  + ++++
Sbjct: 101 PMTREEAYEVFKDSYQEGISESTDVTPNLDWWFSSGPYRGPDDVERRWKIGLEQVDKVID 160

Query: 834 ----NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
               +P +    + D      +   ++    DI I G ID + I      + ++KT    
Sbjct: 161 WIENHPSLEVWSTPDGKP--GIELDLDFMLGDIQIRGFIDAVLILDGEPMVVDHKTGLKP 218

Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
             +          QL++Y   LK  Y    +   + +++
Sbjct: 219 GDD---------FQLAVYALALKKLY-GLDVQRGIYFMA 247


>gi|206973756|ref|ZP_03234674.1| uvrD/Rep helicase family protein [Bacillus cereus H3081.97]
 gi|206747912|gb|EDZ59301.1| uvrD/Rep helicase family protein [Bacillus cereus H3081.97]
          Length = 689

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|217963571|ref|YP_002349249.1| ATP-dependent nuclease subunit B [Listeria monocytogenes HCC23]
 gi|251764606|sp|B8DF43|ADDB_LISMH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|217332841|gb|ACK38635.1| ATP-dependent nuclease subunit B [Listeria monocytogenes HCC23]
          Length = 1157

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 92/748 (12%), Positives = 193/748 (25%), Gaps = 169/748 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       IA  I  ++              + +DI +L R   D  ++        
Sbjct: 307  QANNRRAEIEGIAREIRQLVLNG----------YRYRDIAILTRNLGDYDVLCETVMEA- 355

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I    + +  +  H  I+ + +    IL + + +  F  +     F+ +E      
Sbjct: 356  --YNIPTFIDKKRAMAKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNR 413

Query: 453  --------------IFKICTQRHETETVYE-----------------YIQKFANCGISKF 481
                          I        E + VY                  ++Q   N   S  
Sbjct: 414  RKADILENYVLENGIQNKWKWEKEGDWVYRKIRGLSTNVLPQTDEEIHMQSIINEMRSLI 473

Query: 482  QHVIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQF--------------ISRFGNEVI 526
             + +  +   +  A+            L      ++               ++R   +  
Sbjct: 474  VNPLATLELNLRKAKTGMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAW 533

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              +   L+  +         L      +              + ++V +  +  AK L+ 
Sbjct: 534  SSISALLDEFVEVLGEETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDM 593

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V+F +     V   +   K        D         +  ++NNI              
Sbjct: 594  KVIFAIGMNDGVMPLRQKDKGIFSDQDRDALRAEDSKLKPSAKNNIG------------- 640

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E + L Y  ++  SD+L +   +     K  ++  +   +   F+       +   + ++
Sbjct: 641  EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFNELNESVYLTDPSLLS 700

Query: 706  KDE-------------------------------WIAYEWSTHHPENTPLEREETIKQLM 734
              E                               W     S    E   +  ++ +  L 
Sbjct: 701  DAEQSSYIRSKQATLGLLTSQLQMYKRGYTLSSVWWDAYNSYFENEKESIMAKQVLSSLY 760

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
             E K      +  KN   E    + S ++                  E      Q  + G
Sbjct: 761  YENKTKPLQETTAKNLFGETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQLQAVDMG 820

Query: 784  LIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
             I H  ++ I    +       N     C + AKL        +   I   L +  M   
Sbjct: 821  EIFHGAMEWISAELKRNNLDWGNLTEEECKQMAKLAMTFLAPKIQHEIL--LSSKRMEYI 878

Query: 841  M------------------SCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
                                  ++  V +                     ++++ GRID+
Sbjct: 879  QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDR 938

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL 923
            I  +       + I +YK+  H    +  + Y    Q+  Y  I+         K+    
Sbjct: 939  IDMAEQDDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPA 997

Query: 924  --LIYVSEPKVF----IIPQNKLNKAFA 945
              L +    +       +    + K   
Sbjct: 998  GVLYFHMHNQYVQAEKELSDEAIAKELQ 1025


>gi|156095560|ref|XP_001613815.1| UvrD/REP helicase [Plasmodium vivax SaI-1]
 gi|148802689|gb|EDL44088.1| UvrD/REP helicase, putative [Plasmodium vivax]
          Length = 1048

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 106/360 (29%), Gaps = 69/360 (19%)

Query: 131 KYLNAHYEEAKKKNCVL--DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
               A Y+   +    +  DF+DL+I T  L+K+   +   R KI  E +++  DE QD 
Sbjct: 327 AKFYAEYKRILQTAKHVYYDFDDLLIETYRLMKEDLRA---RDKILGEWHYVFCDEFQDI 383

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSP---------------RTLFAVGDEKQSIYSFHGAE 233
           +  Q+ +++        G+   S                 R+         S+    GA 
Sbjct: 384 NTTQFNILQFFANGGGGGREEASPHSVNRSKGAAPPHSVNRSKGVA--PPHSVNRSKGAA 441

Query: 234 PKR---------VLREKRINQKRATNAGQKFSIIE-----------------------LP 261
           P             R  ++  +  T  G     I                        L 
Sbjct: 442 PPHSVNRSKGVAPQRGTQLTDRSLTVIGDDDQSIYSFRGAHINVFDKILKEHNCLLFKLG 501

Query: 262 LSFRSTADILTVVDKVFSIPENAQ-----GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            +FRST +I+ V   +     N +       +      +   + +  +     +  Q++ 
Sbjct: 502 TNFRSTKEIVRVSCNLILHNANCRIAKELRTNNVQGEKVNFHAFKTNKDQVSFILCQIIF 561

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                     +       S    +    L    +  +                 + A   
Sbjct: 562 LKKKYSYKFGDFV---ILSRTNRTLRETLKCMHSVEVRRRAAKFFREREASAAGVSAAAG 618

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGND-RFILTDHLAIKDLMALGRFILSQEDDL 435
            V      D   ++  T      +KI +   + +        I +L+ + RF+L+  DD+
Sbjct: 619 GVNAAVGVDAAGVSAET------FKIPIKELNKKKSFFGSREIVELITVLRFLLNVHDDI 672



 Score = 48.4 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 43/195 (22%)

Query: 493  HIAQFCSPHDFFTLILGAKKGRQQF---ISRFGNEVIDVLDEFLNFTLRNE--QNSYSSL 547
               +  +  D    +   +  ++QF           +  +   L  T+  +  Q + +  
Sbjct: 886  KRPRDETHPDLVNELKIKRDLQRQFGLSEEDLAENEMQNIFVLLEMTMEYQPNQINQNCS 945

Query: 548  QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              LIS L  +   I          V + T+H +KGLE  VVF+V+               
Sbjct: 946  DCLISFLNDFKNDIHDRMLVEK--VTLTTIHKSKGLEWKVVFIVNAIEGEIPQT------ 997

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                                                  E  ++ YVG+TRA   L +   
Sbjct: 998  ------------------------------AENNRDVIEERKIFYVGITRAKFFLYLLCF 1027

Query: 668  SNTSNEKKSNQRTWY 682
               S+  + N  + +
Sbjct: 1028 LQNSHTAEKNTVSRF 1042


>gi|229156391|ref|ZP_04284485.1| UvrD/Rep helicase [Bacillus cereus ATCC 4342]
 gi|228627068|gb|EEK83801.1| UvrD/Rep helicase [Bacillus cereus ATCC 4342]
          Length = 689

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|217960251|ref|YP_002338811.1| uvrD/Rep helicase family protein [Bacillus cereus AH187]
 gi|217062949|gb|ACJ77199.1| uvrD/Rep helicase family protein [Bacillus cereus AH187]
          Length = 689

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|288573980|ref|ZP_06392337.1| ATP-dependent nuclease subunit B-like protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569721|gb|EFC91278.1| ATP-dependent nuclease subunit B-like protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 958

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/605 (9%), Positives = 150/605 (24%), Gaps = 85/605 (14%)

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
           G   +   G         + V  R              +   Y +    ++   + + + 
Sbjct: 284 GEGPLADKGNFPGWGEVGMTVDFRSTSLAS-------EVLRRYAVPFRRSEGRTVAETIL 336

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSPLF--NFSEDDIFKICTQRHETETVYEYIQKFAN 475
              +                  +L  P F    SE  +     +  +        ++   
Sbjct: 337 WDTVRRAWDCYRDGWQPEPTAELLCLPWFFHGLSERWLVMASPRGLKGWRDLASSEESLA 396

Query: 476 CGISKFQHVIK----------YIHELIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNE 524
             + +     +           +  +  +        +  +  L  +    + +   G+ 
Sbjct: 397 EPLERVVAFAEAIGKGGTAEELLTAMKRLVTSSPDWREVLSSRLEDRPELDEVVLELGSA 456

Query: 525 VIDVLDEFLNFTLRNEQN----------SYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           V + LD  L+     + +             ++  L    E     +    ++    + +
Sbjct: 457 VQE-LDRKLDRIAELQADLGDPGKAVLKGGDAMAFLSVWAESA---VVWPGASRSGTMTL 512

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
                       +       ++ +     +   +     +             R ++   
Sbjct: 513 YGGTPPVLAHHRIWAFCGVTAKNWPGPMAESPLLGDCHKELLHDMDLRGSRLDRTHLPLM 572

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
             K  ++       R+L  G     D +I+   S     +   +  +          DE 
Sbjct: 573 SEKRAQREVLF--RRILACGD----DLVILSYPSLDGAGRPLPESPFIGGALRDRWIDEL 626

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            K+++   ++               E   L   E  +              P    + E 
Sbjct: 627 GKEVRSVGNVL-----------PRWEEPALLPSEVQEPPKGIVTARPDRRLPSDPIMAEI 675

Query: 755 YILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
             +  S+ID+                             G   H+L + ++   E  R  
Sbjct: 676 RSIRLSSIDSFAACPFMFRCSQIVGLEPPERPGYDGRLAGTAAHRLWRDVWKAYEVDRDA 735

Query: 804 FITSYC-TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS-CDSYSEVS----------- 850
            + S        +        L     +   + ++   +   D  SE+            
Sbjct: 736 DLASLACDIWPSVLEEVYRGLLYSPDLKRRGDALLKDILKTADYLSELEDIGLKNMRVAS 795

Query: 851 -VSGKINC-PKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            +  ++       +  +G  D+I  +    + I++YK+      +          QL+ Y
Sbjct: 796 FLEWELPVLELDGVPFTGIADRIDLLDDGTVLIWDYKSGGSSKYDRS-------LQLACY 848

Query: 908 EKILK 912
            + L+
Sbjct: 849 ARSLE 853


>gi|222081487|ref|YP_002540850.1| hypothetical protein Arad_7839 [Agrobacterium radiobacter K84]
 gi|221726166|gb|ACM29255.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 568

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 86/292 (29%), Gaps = 38/292 (13%)

Query: 26  FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
            Q   + +     +  G     K    L +A          +   + FL+        + 
Sbjct: 7   DQRRRLLETEGSILVRGGAGSGKTTIALAKACADLAAGRLGNTGKALFLSFARATVARVA 66

Query: 86  TQEINKKSPDLKEKLK------------KSQDEFIKIRDRFNTYKMFKSTLASLTL--AK 131
            Q       +   +++            KS    +  R   +     ++      L  A 
Sbjct: 67  EQATATIPREQLARIEINTYHGFAWTILKSHAYLLCARPGVSLLLPAQARGRLAGLDGAA 126

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L     E   +  ++ F+       +L     +   +     +    I++DE QDT+  
Sbjct: 127 RLARQ-RELFDQEGLIAFDLFPSLLTELFA---LVPLLAQAYARAYPLIIVDEFQDTNTA 182

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           +W+++  L                L A+GD KQ IY F GA+P+R        +    + 
Sbjct: 183 EWQMVARL-----------GQHSRLIALGDPKQRIYDFKGADPRRFDEFIEAFRPTLFDF 231

Query: 252 GQKFSIIELPLSFRSTA-DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                      + RS    +    D +      A   +  S      +S R 
Sbjct: 232 QG--------ENRRSPGTQMTDFADDMIDGVFKAVAYTGVSIARYGGQSLRP 275


>gi|307154371|ref|YP_003889755.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
 gi|306984599|gb|ADN16480.1| UvrD/REP helicase [Cyanothece sp. PCC 7822]
          Length = 622

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 99/338 (29%), Gaps = 36/338 (10%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N + DF D I          + S W      +    +L+DE QD +  Q ++   L    
Sbjct: 197 NSIFDFTDQIWLPVK--WNVEDSPWF-----KPYKFVLVDECQDLNAAQLKLALMLAG-- 247

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                  S+ R LF VGD +Q+I  F GA+            K       K   + L L 
Sbjct: 248 -------STGRMLF-VGDPRQAIMGFAGAD-------CDSYYKIVE--ETKAIELPLSLC 290

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +R     + +V+K+F  PE       ++ T     +        ++  + ++S+  +   
Sbjct: 291 YRCPKTHVALVNKIF--PEIPIEAHPNAKTGTILEARENDLAQYLEPDDLILSRKTNPLV 348

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                       L Q  SA I  R I   I N +           +  +  D   +    
Sbjct: 349 VLCIQL------LAQGMSAKIKGRDIGKIIKNELEEIARIPGFDYQ--EFNDFFNMYTDA 400

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
           K   L          +     +     I T       +  L   I     D +   +L +
Sbjct: 401 KIGRLKGMDNSEKLIEDTRDRLSALHTIYTSRPEANSINDLIISIDELFSDENSSIILST 460

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
                  +          +    +E    +        
Sbjct: 461 CHRAKGLEANRVFILNPGDMPMTWENQLDWQETQEHNL 498


>gi|320095655|ref|ZP_08027312.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178
           str. F0338]
 gi|319977412|gb|EFW09098.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178
           str. F0338]
          Length = 352

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 65/266 (24%), Gaps = 56/266 (21%)

Query: 484 VIKYIHELIH-IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN 539
               +  L        S  D     L       Q       +    ++ L E  +     
Sbjct: 41  FWGLVEALRRAERGGASVADILEEALDRTGYLAQLRRSEDPQDASRVENLAELHSVARAF 100

Query: 540 EQNSYSS-LQELISELEQYPPTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            Q +    L + +  +     + +     A   +V +MTVHTAKGLE PVVF+       
Sbjct: 101 AQEAPGGGLADFLERVALVADSDQVPSGGARSGQVTLMTVHTAKGLEFPVVFVTGMEDGT 160

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F H+                                                  YV +TR
Sbjct: 161 FPHQRSLGEARELEEERRLA----------------------------------YVAITR 186

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A ++L +                    V  ++   + +   +  + I  +       +T 
Sbjct: 187 ARERLYLT----------------RAAVRSAWGAPQEMPPSRFLDDIPAELLEVRRATTS 230

Query: 718 HPENTPLEREETIKQLMDEQKIPKKL 743
                  +           +      
Sbjct: 231 AERLRAFQGGSYGSDDGGSRDGRDPW 256


>gi|153941363|ref|YP_001392184.1| putative helicase [Clostridium botulinum F str. Langeland]
 gi|152937259|gb|ABS42757.1| putative helicase [Clostridium botulinum F str. Langeland]
          Length = 763

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 103/314 (32%), Gaps = 38/314 (12%)

Query: 46  ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105
                  +++       EE  + +   +       + N   +   +    L + +++   
Sbjct: 411 DKDYILKIREVRAKYEGEEERTNIIKLY-----EERDNKKEKIKLEAEEVLNKTIREWLI 465

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK----NCVLDFEDLIINTNDLLK 161
           + +    R           A+  +   +  +Y + K +    N  +D EDL       +K
Sbjct: 466 DDVVDVYRDMYIDEENLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIK 525

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
              V  +       +  H++IDE QD S ++  V++ L           S  R    VGD
Sbjct: 526 IDGVDNY-------KFAHMVIDEAQDYSPLELYVLKLL-----------SKARGYTIVGD 567

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             QSIY + G             +K      ++   I L  S+RST +I+   +KV    
Sbjct: 568 LGQSIYYYKG---------IENWEKLIKEVYEEGEYIPLKQSYRSTVEIVDFANKVLRKQ 618

Query: 282 ENAQGLSEDSTTTIRH--RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
           +N    ++      +H  +     +    +    V+   + + +         ++     
Sbjct: 619 KNNLEPAKAVLRHGKHPKKIQYKDEKDFYEKLNSVIETIEEKKDKTIAIICKDYEQCESL 678

Query: 340 SSASILARRIAYTI 353
             +  L     + I
Sbjct: 679 KESLHLKEEKQWEI 692


>gi|326798724|ref|YP_004316543.1| ATP-dependent nuclease subunit B [Sphingobacterium sp. 21]
 gi|326549488|gb|ADZ77873.1| ATP-dependent nuclease subunit B [Sphingobacterium sp. 21]
          Length = 970

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 89/717 (12%), Positives = 196/717 (27%), Gaps = 109/717 (15%)

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLS---FRS-------TADILTVVDKVFSIPENA 284
            R +   +      T+  Q      L  +   +RS       +   +    ++  +  NA
Sbjct: 165 DRFIELWKTLPLLYTDFHQALKERGLATNSQFYRSFAKGDETSPSYIYQFKQLVFVGFNA 224

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS--------QCNPQQESWTSYFDSL 336
              +E        +  R      V  +     Q ++          +    +  + F+ L
Sbjct: 225 LNKAEALLFKKWQKEKRALFYFDVDRYYLDDVQQEAGAFLRRNLNSHGLLHALGAPFNQL 284

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                   + +  +YT    +    +        I    I VL+    D  L+    +  
Sbjct: 285 ADRKQNIKIVQTTSYTAQAKLLDSFLVDKKSTDAISQGLIAVLL---ADERLLIPTLQS- 340

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGR----FILSQEDDLSFVCM---LKSPLFN-- 447
                I       F ++       +    R    ++  + D + +  +   L  PL +  
Sbjct: 341 -IPVSIETNITMGFPISQSPIYGIVDLWLRIQERYLQQKSDLIYYKDVEIFLSHPLIHTP 399

Query: 448 --FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
               E     I T  +    + E           K       I  L  I +         
Sbjct: 400 DPIKEQVQQLIYTNHYINVPLAELQAVSRTSFFDKRTDGRYLIKNLQEIIREIFQIRKEK 459

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRA 564
            +L          +    EV  +L++  +       ++  SL  E    L +       A
Sbjct: 460 ELLTYPD------AAIFTEVFKILNQLYDAL-----STLPSLSVEFTISLIRKSLQGITA 508

Query: 565 HSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                  + V++M +   + L+   ++++     +          I  S+    G+P+  
Sbjct: 509 AIEGDPLSGVQVMGLLETRNLDFKEIYILGVNEGILPKTSSSATFIPDSIRRAHGLPV-- 566

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                 N          +   + E   L+Y G    +    I +       K+    + +
Sbjct: 567 ----LENQEALSAYLFYRLMQRAEQITLVYNGHVDENSSGEISRFV-----KQLQFESHF 617

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
           + +        +  +      I K   I     ++   +  L    +        + P  
Sbjct: 618 NFIELKQQQIIKTNEAPPAMEIKKVNEIGKILQSYLNRDNSLRPGISATAFTTFLQSPLL 677

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--------F 794
            F      I EP +L                  D +    G IIH+++Q           
Sbjct: 678 FFLKYVAKIKEPQLL----------------TEDFEANRIGSIIHEIMQWFYEELKRVSP 721

Query: 795 TLPEHKRKNFITS------------------YCTKNAKLWPAKEYKNLLLSITRLLENPM 836
            +   + K+ ++                   Y   N+     K    ++    ++  +  
Sbjct: 722 HITAQRIKDQLSRLDHLCLKATAKDFYGNPAYFDINSPSSTEKIVLEIVKEYAQIFIHHD 781

Query: 837 MT-------TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
           +           +   Y  +     ++  +  + + G ID++      I I +YKT 
Sbjct: 782 LKNTPFTIIELENKQDYV-IDFPITVDGKESSVKLYGIIDRVDEKDGKIRIVDYKTG 837


>gi|16801432|ref|NP_471700.1| hypothetical protein lin2369 [Listeria innocua Clip11262]
 gi|81525574|sp|Q929A8|ADDB_LISIN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|16414892|emb|CAC97596.1| addB [Listeria innocua Clip11262]
          Length = 1157

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 73/737 (9%), Positives = 177/737 (24%), Gaps = 147/737 (19%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       +A  I  +      + +         D  +L     ++  I       +
Sbjct: 307  QANNRRAEMEGVAREIRQLALNGYRYRDIAILTRNIGDYDILCETVMESFDIPIFIDKKR 366

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRF------------------------------ 427
               K   +   R  +   L       + +                               
Sbjct: 367  AMAKHPFIEFIRSSIDAILFNWKYEPIFQAVKTEFFFDVAENATIMRRKADILENYVLEN 426

Query: 428  -ILSQEDDLSFVCMLKSPLFNFSEDDI---------FKICTQRHETETVYEYIQKFANCG 477
             I ++         +   +   S + +           +  +            +     
Sbjct: 427  GIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEELATQSVINEMRNLIVEPLSTLENNITK 486

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                      ++  +   +     + +  +       +  ++R   +    + E L+  +
Sbjct: 487  AKTGIEFAMALYHYLEQVKAVEHLESWRQVAEENGYLE--LAREHEQAWSSISELLDEFV 544

Query: 538  RNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                     +      +              + ++V +  +  AK L   V+F +     
Sbjct: 545  EVLGEEELDVNSFSEIITTGLDALEFSLLPPSLDQVVLADMENAKLLNMKVIFAIGMNDG 604

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            V   +   K  +     D   +     +  ++NNI              E + L Y  M+
Sbjct: 605  VMPLRQKDKGILSDQDRDSLRVENSNLKPSAKNNIG-------------EEDLLAYKIMS 651

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
              SD+L +   +     K  ++  +   +   F N      +   + +N  E  +Y  S 
Sbjct: 652  LPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFKNLNESVYLTDPSLLNDKEQSSYIRSK 711

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL------------------- 757
                     + +  K+      +    ++    D  E                       
Sbjct: 712  QATLGLLTSQLQMYKRGYPLSNVWWDAYNSYFEDSKESEAAKQVLSSLYYENKTKPLQET 771

Query: 758  ------------NPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVIF 794
                        + S ++       +                 Q  + G I H  ++ I 
Sbjct: 772  TAKNLFGENIHASVSRMEKFFSCEFQHFAQYGLKLEERAHYKLQAVDMGEIFHGAMEWIS 831

Query: 795  ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---------S 842
                       N     C + AKL        +   I   L +  M             +
Sbjct: 832  AELKRTNRDWGNLTEEECRQMAKLAMTFLAPKIQHEIL--LSSKRMEYIQYKLLQIITRA 889

Query: 843  CDSYSEVS---------VSGKINCPKK------------DIIISGRIDQI--SISQQN-- 877
                +E +         +                     ++++ GRID+I  +       
Sbjct: 890  TTVLNEQAKSSAFRPIGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDRIDAAEQDDRTF 949

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL--LIYVSEPKV 932
            + I +YK+  H    +  + Y    Q+  Y  I+         K+      L +    + 
Sbjct: 950  LRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQY 1008

Query: 933  F----IIPQNKLNKAFA 945
                  +    + +   
Sbjct: 1009 VQAEKELSDEAIARELQ 1025


>gi|330859641|emb|CBX69980.1| hypothetical protein YEW_GY30530 [Yersinia enterocolitica W22703]
          Length = 377

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/265 (9%), Positives = 71/265 (26%), Gaps = 47/265 (17%)

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           +  +  +      +DE  A        +     R  +   L             +   + 
Sbjct: 40  QAGQLDETPWQPQQDELPALAARQFSRQIHDFWRVTSYSGLQQHGSSKSVASQALSVPLQ 99

Query: 753 EPYILNPSTIDTKGKT---NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
           E      +    +         +  +  +    G  +H LL+ +    +   ++++T   
Sbjct: 100 ELLPRLDTDAVGEQTLMTEPQLTPHTFPRGAAPGTFLHDLLEPL-DFSQPIEQDWLTEQL 158

Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINCPKKDI- 862
            +    +  +    L   +T +++ P+      +         +E+     I+   +   
Sbjct: 159 QQQG--FGEQWSSMLYQWLTDIVQTPLNETGVTLAQLTPQSKQAELQFYLPIDTLLQARE 216

Query: 863 -------------------------IISGRIDQISISQQNIFIFEYKTHHHVPQE----- 892
                                    ++ G ID +   Q   ++ +YK++           
Sbjct: 217 LDTLIKRYDPLSRQCPVLDFQQVRGMLKGFIDLVFCWQGKYYLLDYKSNWLGEDSSAYTH 276

Query: 893 ---IEHIPY-THIAQLSIYEKILKD 913
               + +    +  Q  +Y   L  
Sbjct: 277 DAMAQAMAEHRYDLQYQLYTLALHR 301


>gi|320531267|ref|ZP_08032246.1| hypothetical protein HMPREF9057_00105 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136534|gb|EFW28503.1| hypothetical protein HMPREF9057_00105 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 271

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 54/238 (22%), Gaps = 28/238 (11%)

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
           LE    + +          +  P          L                         G
Sbjct: 39  LEAGLLLAERSRALSSGPAVRLPEHLAATRLDDLRADRRQFALDLRRPLPPEPRAAGRLG 98

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
            + H            +R +   +         P          I R L+       +  
Sbjct: 99  TVFH--------DAVAQRLSARGTLFGLGQAGVPDSLGPQDRDRIERWLDTAENLPLLED 150

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISI--SQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
              +E               +  R+D +          I ++KT               +
Sbjct: 151 YILAE--TETDREITIGATTLRCRMDAVFRRSDGAGWLIVDWKTGR---------RQVPV 199

Query: 902 AQLSIYEKILK--DSYPNKSLVCLLIYVS--EPKVFIIPQN---KLNKAFAEISTKIP 952
            QLS+Y          P  S+    +YV     +V  +       L++  + ++   P
Sbjct: 200 DQLSVYVHAWAASQGVPTGSVRAAYVYVDYPGGRVDELTAAGLLDLDQIESALTPGSP 257


>gi|4455689|emb|CAB36663.1| probable ATP-dependent DNA helicase [Mycobacterium leprae]
          Length = 250

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 63/216 (29%), Gaps = 53/216 (24%)

Query: 525 VIDVLDEFLNFTLRN-----------------EQNSYSSLQELISELEQYPPTIKRA--H 565
            +D L+E ++F                     E         L + LE+           
Sbjct: 6   RLDNLNELVSFAHEFSTEQANAAALAKSLHTPEDEDVPDTGALAAFLEKVSLMSDTDQIP 65

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
             N   V +MT+H AKGLE PVVF+      +  H                         
Sbjct: 66  ENNSGVVTLMTLHAAKGLEFPVVFVTGWEDGMLPHMRTLGDPT----------------- 108

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                               E  RL YVG+TRA  +L + +    S+  +         +
Sbjct: 109 -----------------ELSEERRLAYVGITRARQRLYLSRAITRSSWGQPILNPESRFL 151

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
            +        ++  LT+S +     A  +    P +
Sbjct: 152 REIPPELIDWRRSILTDSYSTPASGASRFGRVRPSS 187


>gi|227823894|ref|YP_002827867.1| double-strand break repair protein AddB [Sinorhizobium fredii
           NGR234]
 gi|227342896|gb|ACP27114.1| double-strand break repair protein AddB [Sinorhizobium fredii
           NGR234]
          Length = 1059

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/491 (9%), Positives = 113/491 (23%), Gaps = 55/491 (11%)

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE--YIQKFANCG 477
           D+  L   +             +       + DI +         T  E           
Sbjct: 489 DISGLEAVLDKALARQRTERHPRPWRRGIDQGDIARARALAGRISTAVEPLTSTNAGGSE 548

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
             +   ++  + +               + +  +    +    +G+E  + L   L   +
Sbjct: 549 GGRHHSMVLTLADWAERTGR----ALEAVAIDERGSLGEL---WGSEAGEALATLLRSII 601

Query: 538 RNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             + Q      Q     +        +  S  H  V I     ++     +V L      
Sbjct: 602 ETDGQMEADGRQWCDIVVALAASEAVKPRSMRHPRVFIFGALESRLQSVDLVVLGGLNEG 661

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            +  +      +  ++    G+     +     +                        M 
Sbjct: 662 TWPGQTSNDPFLSRTMKSGIGLEPPERRIGQLAHDFQ---------------------MA 700

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI-AYEWS 715
             + +LI+ +     +      R    +            K    + ++    +   E  
Sbjct: 701 CGTRRLILSRSMRQGSAPTVASRWVQRLQALGGKTLTEQLKANGASYLHWMRILDGGERQ 760

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
                  P    E   +     ++ K    P          L P          ++S   
Sbjct: 761 PLSERPQPKPPVELQPRKYSFSEVTKLRRDPYSIYARRILRLEP----------IDSFNR 810

Query: 776 DNQTFNRGLIIHKLLQVI----FTLPEHKRKNFITSYC------TKNAKLWPAKEYKNLL 825
           D     RGL+ H+++       F       +  +           +              
Sbjct: 811 DPGAAERGLLYHRIVDRFVKGGFDPASGDGEEAMVRLIREAFDEEQLPAHIDTIWRPRFE 870

Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYK 884
                 L            S++E      ++    DI ++G  D++         I +YK
Sbjct: 871 AVARAFLSWERERRHTIVRSFTEAP--AAMDVGVSDIRLTGIADRLDRLANGTVDIIDYK 928

Query: 885 THHHVPQEIEH 895
           T      +   
Sbjct: 929 TGSSPSAKEAR 939


>gi|75760176|ref|ZP_00740234.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492340|gb|EAO55498.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 218

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 7/170 (4%)

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                 RA     + VRIMT+H +KGLE PVVF+   G +  +   +K+  +   +    
Sbjct: 9   DDMGTARALGEQEDVVRIMTIHKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDVGFGS 68

Query: 617 GIPIWIPQSKSRNNIVSDLI-KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                  + K        +    +K     E  R+LYV +TRA ++LI+      +N++ 
Sbjct: 69  QFIDPRKRIKYTTLSQLAIKPXKMKMELIAEEMRVLYVALTRAKEKLILIGTVKDANKE- 127

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                    +    H++  +       +    +WIA     H      LE
Sbjct: 128 -----MEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYRHRDSEMLLE 172


>gi|163732945|ref|ZP_02140389.1| hypothetical protein RLO149_09805 [Roseobacter litoralis Och 149]
 gi|161393480|gb|EDQ17805.1| hypothetical protein RLO149_09805 [Roseobacter litoralis Och 149]
          Length = 985

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/472 (10%), Positives = 119/472 (25%), Gaps = 46/472 (9%)

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL- 554
              +       I     G             + L    N T         +  +  + + 
Sbjct: 490 WAQAHMALAEAISSGPFGHDTGEIWKQKAGQEALKVMTNLTDLAHHGGPMTASDYGNLVG 549

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   R   A H +V I     A+   + +V L       +         +  +L  
Sbjct: 550 ALLSEGEVRDRDAPHPDVMIWGTLEARVQGADLVILAGLNDGTWPEAPTPDPWLNRALRH 609

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G+ +   +     +     I                     A+ ++ + +   + + +
Sbjct: 610 QAGLLLPERRIGLAAHDYQQAI---------------------AAPEVWLTRSIRSDDAE 648

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
               R    +         +     L    N+  +   +                  +  
Sbjct: 649 TVASRWVNRLCNLLSGLKGQDGPALLEAMKNRGTFWLDQTVLLEKVEPAAPAARPAPRPP 708

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
            + +  +   + IK+ I +PY +    +       L  L+       RG + H++++   
Sbjct: 709 LDARPKRLAVTDIKHLIRDPYTVYAKHV--LRLRKLGPLVQSPDALLRGTVSHQVMEDFV 766

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
                             A     ++          L     ++     +  +   +   
Sbjct: 767 RRTLADPATLTAQDLVDVADEVLMRDVPWPAARALWLARLTRISEWFVVNERARQHIGMP 826

Query: 855 INCPKKDI----------IISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQ 903
           +   +  +           ++ R D+I  ++   + I++YKT      + + +      Q
Sbjct: 827 VAFEEDAVGKMVWPDIKFTLTARADRIDQTEDGDVLIYDYKTGSPPTVKQQTLFDK---Q 883

Query: 904 LSIYEK-----ILKDSYPNKSLVCLLIYV-SEPKVF--IIPQNKLNKAFAEI 947
           L I          +   P        I + S P      +      +  AE+
Sbjct: 884 LLIEAAMVEQGAFEKLGPQHVAQATFIGLGSNPSEVPAPLDSEPPAQILAEL 935


>gi|325066923|ref|ZP_08125596.1| putative ATP-dependent DNA helicase II [Actinomyces oris K20]
          Length = 174

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 44/180 (24%), Gaps = 25/180 (13%)

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
                           G + H            +R +   +         P         
Sbjct: 1   DLRRPLPPEPRAAGRLGTVFH--------DAVAQRLSARGTLFDLGQAGVPDSLGPQDRD 52

Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN--IFIFEYK 884
            I R LE       +     +E               +  R+D +   +      I ++K
Sbjct: 53  RIERWLETAENLPLLEDYVLAE--TETDREITIGATTLRCRMDAVFQRKDGPGWLIVDWK 110

Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILK--DSYPNKSLVCLLIYVS--EPKVFIIPQNKL 940
           T          +P   + QLS+Y          P  S+    +YV     +V  +    L
Sbjct: 111 TGRR------QVP---VDQLSVYVHAWAASQGVPTASVRAAYVYVDYPGGRVDELTAEGL 161


>gi|228908556|ref|ZP_04072396.1| UvrD/Rep helicase [Bacillus thuringiensis IBL 200]
 gi|228851109|gb|EEM95923.1| UvrD/Rep helicase [Bacillus thuringiensis IBL 200]
          Length = 327

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD    Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 94  EIGQKFHHVVIDEAQDFPPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 142

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +K+    E   GL+
Sbjct: 143 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANKIIKNAEIPVGLA 189


>gi|255325695|ref|ZP_05366792.1| RecB family exonuclease [Corynebacterium tuberculostearicum SK141]
 gi|311739434|ref|ZP_07713269.1| exodeoxyribonuclease V beta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297305|gb|EET76625.1| RecB family exonuclease [Corynebacterium tuberculostearicum SK141]
 gi|311305250|gb|EFQ81318.1| exodeoxyribonuclease V beta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 276

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 69/208 (33%), Gaps = 37/208 (17%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPE 798
             +    P  L+PS      +  L                   +G ++H +L+ +  LP 
Sbjct: 2   ATSSTPRPLALSPSRASDYKQCPLLYRFRAIDKLPEPKTIAQVKGTLVHAVLEEMHKLPR 61

Query: 799 HKR------------KNFITSYCTKNAKLWPAKEYKNLLLSITRLL------ENPMMTTA 840
            +R               +TS   +  +L P ++  +  ++  +LL      ENP     
Sbjct: 62  EERTYPAAVKMIKPSWAEMTSKDDELLELVPEEDTYDFFVAARQLLKGYFQMENPQG--- 118

Query: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYT 899
             C   +E+ V+  +      + + G ID++  +    + + +YKT         H    
Sbjct: 119 FDCQE-TEMYVNTVLP---NGVPVRGFIDRVDRAPTGEVRVVDYKTGKKPLPRYSHDA-- 172

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYV 927
              Q+  Y  +             L+Y+
Sbjct: 173 -QFQMRFYALVYWRILGTIPHQLRLMYL 199


>gi|325694959|gb|EGD36864.1| exonuclease RexB [Streptococcus sanguinis SK150]
          Length = 1093

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/669 (9%), Positives = 180/669 (26%), Gaps = 91/669 (13%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
             +  ++     + +   + +           +              ++ KDI +L+   
Sbjct: 275 ESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDGVRYKDIRLLL--- 331

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            D        + + + Y+I         +  H  ++ + +L R           + +LK+
Sbjct: 332 GDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVDSLERLKRYNFQLEDLLNLLKT 391

Query: 444 PLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            L+   +++++          +              S+ +  +  ++ +           
Sbjct: 392 GLYGDLTQEELDHFEQYLRFADIKGASKLAKDFTANSQGKFDLDRLNHIRRRVMTPLQDF 451

Query: 503 FFTLILGAKKGRQQFIS--------------------RFGNEVIDVLDEFLNFTLRNEQN 542
           F +    A     +F                      +      +V   F +   +  Q 
Sbjct: 452 FKSRSQTASGLLAKFTEFVQAARLSDNLTVLLQGESQQEQERHEEVWKAFSHVLEQFAQV 511

Query: 543 SYSSLQELISELEQ----YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
              S  +L   L         +  R   A  + V++ +    + L +P V+ +    + F
Sbjct: 512 FADSKVKLDDFLALVLSGMLLSNYRTVPATVDVVKVQSYDLIEPLAAPYVYAIGLTQERF 571

Query: 599 SHKHIKKMHIMPSL----------NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                 K  +                +  I       K+R   +S +    K+       
Sbjct: 572 PKIAQNKSLLSDEDRARLNDATDSQAELQIASSENLKKNRYTALSLMNSATKELVLSAPT 631

Query: 649 RLLYVGMTRASDQLIICKH-------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            +  V  + ++  L +                   +  ++  ++       +     + T
Sbjct: 632 LVNEVEDSMSTYLLELTAAPLSLPIIVKKPQASSDDIGSYRALLSQIIELHQEEIDREWT 691

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                   +A            +   +  K+L  E   P+ L +       +P  L+ S 
Sbjct: 692 TEEQTFWAVAVRVLRKKLAAEGISIPQISKELKTESLQPETLQALYP--HEQPLRLSASA 749

Query: 762 IDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSY 808
           ++   +              E         + G+ +H++ + +          +    + 
Sbjct: 750 LNEYFRHQYAYFLKYVLRLQEEWTIHPDARSHGIFLHRIFEKVLQDDSSADFDRRLAQAM 809

Query: 809 CT-----KNAKLWPAKEYKNLLLSIT--------RLLENPMMTTAMSCDSY---SEVSVS 852
                  +   ++           +         R+L +P     +  ++    +     
Sbjct: 810 EETSREAEFESIYSESGQTRFARQLLLDTARATGRVLAHPTGIETIGEETGFGSASKPF- 868

Query: 853 GKINCPKKD-IIISGRIDQISISQQNIF------IFEYKTHHHVPQEIEHIPYTHIAQLS 905
             +       + +SG++D+I      +       + +YK+        E       +QL 
Sbjct: 869 --LTLENGRAVTVSGKVDRI----DRLTKTESLGVVDYKSGDIKF-SFEKFFNGLNSQLP 921

Query: 906 IYEKILKDS 914
            Y   +++ 
Sbjct: 922 TYLAAIEEL 930


>gi|269795394|ref|YP_003314849.1| RecB family exonuclease [Sanguibacter keddieii DSM 10542]
 gi|269097579|gb|ACZ22015.1| RecB family exonuclease [Sanguibacter keddieii DSM 10542]
          Length = 297

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 51/223 (22%)

Query: 757 LNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
           L+PS  +   +  L              +    RG ++H +L+ ++  P  +R   +   
Sbjct: 29  LSPSRANDFTQCPLLFRFRVVDRLPEPPSSAAARGTLVHSVLERLYDAPLGERTVEL--- 85

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE---------VSVSGKINCP- 858
               A+     E+  L  +      +P      +  + +E         VS    +  P 
Sbjct: 86  ----AQSLIPGEWDRLREA------SPEYGELFADAAQTEGWLDGAGRLVSTYFTLEDPN 135

Query: 859 ---------------KKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIA 902
                              ++ G +D+I ++      + +YK+                 
Sbjct: 136 RLEPESRETFVESQLDGGPLMRGIVDRIDVAPNGAVRVVDYKSGKSPRPGYAGSAE---F 192

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
           Q+  Y  +L         +  L+Y+ + +V    +    +  A
Sbjct: 193 QMRFYGLVLWRERGEIPKMLQLVYLGDGQVLR-SEPTEAQLLA 234


>gi|229173462|ref|ZP_04301006.1| UvrD/Rep helicase [Bacillus cereus MM3]
 gi|228610156|gb|EEK67434.1| UvrD/Rep helicase [Bacillus cereus MM3]
          Length = 691

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|225375921|ref|ZP_03753142.1| hypothetical protein ROSEINA2194_01557 [Roseburia inulinivorans DSM
           16841]
 gi|225212242|gb|EEG94596.1| hypothetical protein ROSEINA2194_01557 [Roseburia inulinivorans DSM
           16841]
          Length = 107

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 858 PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
            +   +I G ID   I    I + +YKT        + +   +  QL +Y   L+  +  
Sbjct: 28  EEDLTLIQGIIDVFWIEDDGITVLDYKTDRV--DTAQELIDRYATQLKLYADALERVFAT 85

Query: 918 K--SLVCLLIY 926
           +   +  +LIY
Sbjct: 86  RKLKVKEILIY 96


>gi|300934454|ref|ZP_07149710.1| RecB family exonuclease [Corynebacterium resistens DSM 45100]
          Length = 234

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 779 TFNRGLIIHKLLQVIFTLPEHKRK-NFITSYCT-----------KNAKLWPAKEYKNLLL 826
              +G ++H +L+ +  LP  +R                     +  +L P  E    L+
Sbjct: 2   AQVKGTLVHAVLEDLHGLPRAERTYPAAVKMLKPKWAKMVEDDPELLELVPDSETHAYLV 61

Query: 827 SITRL------LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIF 879
               L      +ENP            E  ++  +      + + G ID++ I+    + 
Sbjct: 62  ECRSLVKGYFYMENPEG---FDAHE-CEKYINMMLP---NGVPVRGFIDRVDIAPTGEVR 114

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
           + +YKT                 Q+  Y  +             L+Y+      ++  +
Sbjct: 115 VVDYKTGKKPLPRYSESA---KFQMLFYALVWWRMTGEIPAQLRLMYLKVADDMVLNPS 170


>gi|229097014|ref|ZP_04227982.1| DNA helicase [Bacillus cereus Rock3-29]
 gi|228686410|gb|EEL40320.1| DNA helicase [Bacillus cereus Rock3-29]
          Length = 470

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 44/220 (20%)

Query: 92  KSPDLKEKLKKSQDEF-----IKIRDRFNTYKMFKSTLASLTLAKY--LNAHYEEA-KKK 143
           K+ D  + LK             + D     +  + T   +T+     +   +++  KKK
Sbjct: 131 KNDDYFDFLKDEIQWIKGKNISTLSDYLKADRRGRGTNTRVTMNDREIIYQVFDQYNKKK 190

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
           N +LDF+DL      L+K   +          + +HI IDE QD   +Q + ++ +    
Sbjct: 191 NYLLDFDDL---AVVLMKNPAIFPD-----SIKYDHIFIDEAQDLQQVQLQALKQIAR-- 240

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                     ++     D+ Q IY       +  L                     L  S
Sbjct: 241 ----------KSFIVAADKGQKIYKTSFTWKEIGLNV------------TGNRTKILKES 278

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
           +RST  I+ +   +         +  D    I +   R G
Sbjct: 279 YRSTKQIIQLAASLQQNDM----IIHDEEYVIPNLPEREG 314


>gi|319949274|ref|ZP_08023354.1| RecB family exonuclease [Dietzia cinnamea P4]
 gi|319437064|gb|EFV92104.1| RecB family exonuclease [Dietzia cinnamea P4]
          Length = 303

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 64/232 (27%), Gaps = 41/232 (17%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVI----- 793
           +     +P  L+ S      +  L               +    G ++H +L+ +     
Sbjct: 16  VPLPERKPLALSASRASDYRQCPLLYRLRAVDRVPEPKTRAQVLGTVVHSVLEELYGLEQ 75

Query: 794 ----FTLPEHKRKNFITSYCTKNAKL--WPAKEYKNLLLSITRL------LENPMMTTAM 841
                          +  +  +       P  +  +    +  L      +E+P      
Sbjct: 76  SERAPQRAADLVPAAVERFYAEEDGATVVPLSDRADFQAQVAALVAALYGVEDPQ---RF 132

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH 900
           S  S  E  +   +        + G +D++ ++    + + +YKT        +      
Sbjct: 133 SPAS-CEQYL---VTATAAGTPLHGFLDRVDVAPTGEVRVVDYKTGKPPHPRFQDQA--- 185

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN-----KLNKAFAEI 947
           + Q+  Y  + +  +        LIY+          +     +   +   +
Sbjct: 186 MFQMRFYALMYQRIHGVLPAQLKLIYLKNGSWLTFTPDHASLVETEASLDAL 237


>gi|300855373|ref|YP_003780357.1| putative helicase [Clostridium ljungdahlii DSM 13528]
 gi|300435488|gb|ADK15255.1| predicted helicase [Clostridium ljungdahlii DSM 13528]
          Length = 765

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 27/148 (18%)

Query: 138 EEAK--KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
           +E K  ++  V+D +DL        K   VS         +  HI++DE QD S  Q  +
Sbjct: 497 QEVKENREKKVIDSDDLAPLCYLKFKIEGVSKKF------KYKHIVVDEAQDYSAFQMII 550

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           ++ ++ +            ++  VGD  Q IY + G     +   K + +          
Sbjct: 551 LKEISIND-----------SMTIVGDLGQGIYYYKG-----ITSWKNLIEDVF---DSNA 591

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPEN 283
              +L  S+RST +I+   +KV  + +N
Sbjct: 592 KYTQLEHSYRSTMEIIKFANKVLKLQKN 619


>gi|327461178|gb|EGF07511.1| exonuclease RexB [Streptococcus sanguinis SK1057]
          Length = 1093

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 95/866 (10%), Positives = 236/866 (27%), Gaps = 127/866 (14%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           LI  T   L   ++  + R K D +    L+D   +    Q         +F        
Sbjct: 89  LIYRTLTELDDGELKVYGRIKKDPQFIQQLMDLYHELQTAQMSFADL---EFLEEPEKRE 145

Query: 212 SPRTLFAV-------GDEKQS--IYSFHG-----------AEPKRVLREKRINQKRATNA 251
               +F         GD   S  I +F             A+   V+             
Sbjct: 146 DLVKIFTAVTAALNKGDFDSSSQIAAFAQHILSGDTDEELADLALVIDGFTRFSAEEEYL 205

Query: 252 GQKFSIIELPL---SFRSTADILTVV---DKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                   + +   ++ S           +   +  +  + L+ED      H      + 
Sbjct: 206 VGLLHRKGVEIVIGTYASQKAYRAAFREGNLYQASVDFLRKLAEDYQVKPDHIPHAEAED 265

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTS-YFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              ++   + S++D      + S T      +    +       +A +I   +       
Sbjct: 266 AFGRISRILESRYDFSEPAVEVSETDRAQLQIWATMNQKEELEYVAKSIRQRVHDG---- 321

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 ++ KDI +L+    D        + +   Y+I         +  H  ++ + +L
Sbjct: 322 ------VRYKDIRLLL---GDVEAYQLQLKTIFGQYQIPYYLGRSESMAQHPLVQFIESL 372

Query: 425 GRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            R           + +LK+ L+   +++++ +        +              S+ + 
Sbjct: 373 ERLKRYNFQLEDLLNLLKTGLYGDLTQEELDQFEQYLRFADIKGAGKLAKDFTANSQGKF 432

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQN 542
            +  ++ +           F +    A     +F          D L   L    + EQ 
Sbjct: 433 DLDCLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNLTALLQGESQQEQE 492

Query: 543 SYSSLQELISELEQYPPTIKRAH-----------------------SANHNEVRIMTVHT 579
            +  + +  S + +    +                            A  + V++ +   
Sbjct: 493 RHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTVPATVDVVKVQSYDL 552

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL----------NDDPGIPIWIPQSKSRN 629
            + L +  V+ +    + F      K  +                +  I       K+R 
Sbjct: 553 IEPLAASYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAELQIASSENLKKNRY 612

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-------SNTSNEKKSNQRTWY 682
             +S +    K+        +  V  + ++  L +                   +  ++ 
Sbjct: 613 TALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIVKKPQASSDDIGSYR 672

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            ++       +     + T        +A            +   +  K+L  E    + 
Sbjct: 673 ALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQISKELKTETLQSET 732

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQ 791
           L +    +  +P  L+ S ++   +              E         + G+ +H++ +
Sbjct: 733 LQALYPQE--QPLRLSASALNEYFRHQYAYFLKYVLRLQEEWTIHPDARSHGIFLHRIFE 790

Query: 792 VIFTLPEHKRKNFITSYCTKNAKLWPAKE------------YKNLLLSIT---RLLENPM 836
            +         ++  +   +        E             + LL +     R+L +P 
Sbjct: 791 KVLQDDSSADFDWRLARAMEETSRETEFESIYSESGQTRFARQLLLDTARATGRVLAHPS 850

Query: 837 MTTAMSCDSYSEVSVSGKINCPKKD--IIISGRIDQISISQQNIF------IFEYKTHHH 888
               +  ++    + S           + +SG++D+I      +       + +YK+   
Sbjct: 851 GIETIGEETGFGSA-SKPFLTLGNGRAVTVSGKVDRI----DRLTKTESLGVVDYKSGDI 905

Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDS 914
                E       +QL  Y   +++ 
Sbjct: 906 KF-SFEKFFNGLNSQLPTYLAAIEEL 930


>gi|229031244|ref|ZP_04187250.1| UvrD/REP helicase [Bacillus cereus AH1271]
 gi|228730002|gb|EEL80976.1| UvrD/REP helicase [Bacillus cereus AH1271]
          Length = 544

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 77/546 (14%), Positives = 166/546 (30%), Gaps = 66/546 (12%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y + K  N ++  ++++   N + K   +   +   +  +   I IDE QDTS    
Sbjct: 39  YKEYNQIK--NGIISHDEVLELANYMFKTHPLLCDL---LKDKYQFIFIDEYQDTS---- 89

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLF-AVGDEKQSIY-SFHGAEPKRVLREKRINQKRATNA 251
               SL  + F+        + +    GD  QSIY    G+  + +L             
Sbjct: 90  ----SLVIEIFLKHIRQGKKKNVIGFFGDSMQSIYDEGIGSLEEYIL------------- 132

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 I    + R+   ++ + +++       +  S+     + +   + G +    L+
Sbjct: 133 SGDVQEIRKKQNRRNPKVVIELANRLRVDKLIQEPSSDKQAPNMYNGLVKEGSIKF--LY 190

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +      + +     W   F++  Q    ++    IA              +    + 
Sbjct: 191 SAINDLELVKSSEFFRDWD--FNNPKQTKELNLTHNLIAA--KAGFTELMEIYDKDPIIS 246

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              D+L      K           + ND  I+     +     +   +    L +   + 
Sbjct: 247 FKNDLL-----NKIKQDTNEKKENILNDTNITFEEVTKLYPIQNKKKELKKELIQ--ENP 299

Query: 432 EDDLSFVCMLKSPL-----FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
             ++ +  +   P         ++D +     Q    +      +      + K Q +I+
Sbjct: 300 NTNVLYEQLKDCPFSTVKKIYLNKDALIDDKKQDRNDDGKKGSKRDNLIKHLFKIQTLIQ 359

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
              E      F    +F    +  K+  +  I          +++ +NF   +E      
Sbjct: 360 LYKE-KKYNDFIRKTEFSITSISKKREIKTIIDTIEKMSNQTIEKVINFA--HESGLCRK 416

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
             +    +E              N+     V   K  E   +F    G   FS +H    
Sbjct: 417 DDDFTRFVE-------------KNKYLFNRVSKVKYQEFQNLFKYLEGFTPFSTQHK--- 460

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            I     D+  + +   +    N       +  K+   E   ++ YV  TRA + LI+  
Sbjct: 461 -IKGEEFDNVLVILDNGKWNKYNFEYLFCNRIDKRRVLERSQKIFYVCCTRAKENLIVFY 519

Query: 667 HSNTSN 672
           ++    
Sbjct: 520 NNPNDG 525


>gi|329936993|ref|ZP_08286622.1| DNA helicase II [Streptomyces griseoaurantiacus M045]
 gi|329303600|gb|EGG47485.1| DNA helicase II [Streptomyces griseoaurantiacus M045]
          Length = 716

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/378 (12%), Positives = 105/378 (27%), Gaps = 47/378 (12%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E + +D     +  ++ ++   S        + +  A  L+     +          + 
Sbjct: 317 LESLVEDPGLRSHVDITTVDGLASRV-----VSEVPGAVPLRPLMGGEEESRWAEAAKAT 371

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
             T             + ++   +   L +  +   +        +  + T A   L   
Sbjct: 372 GFTGSARF--------LAQEYRHVI--LAQGIESLAEYEVADRRGRGSRLTAAERPLVWE 421

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               +      + V             L     +A +  +      HI++DE QD    Q
Sbjct: 422 TVEKFTAGLATDGV----------RTWLGTCVDAARLLGEQGPRYRHIVVDEAQDLHPAQ 471

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           W ++R+            + P  LF  GD  Q IY                   R+    
Sbjct: 472 WRLLRA---------AAPARPDDLFVAGDPHQRIYDCR-------------VSLRSLGIK 509

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                ++L  ++RST +IL     +      AQ   E+   T+    S +   G      
Sbjct: 510 VTGRSVKLRKNYRSTQEILRWSTALLVGRPIAQLEDENRKDTLLGYRSALHGEGPSVHAA 569

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
           +           +  +W     +      ++   +  A  ++++       ++ +     
Sbjct: 570 ETEEDELDALVSRVRAWRDAGVAAGDIGVSTRFNKTCAKAVAHLKAAGIPAASLRAADPD 629

Query: 373 AKDILVLVRKRKDTPLIT 390
            +   V V        + 
Sbjct: 630 GETDAVRVGTMHSFKGLE 647



 Score = 46.1 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 58/252 (23%), Gaps = 32/252 (12%)

Query: 425 GRFILSQEDDLSFVCM-LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
                     +    + L+S     +   +      R   E +           I++ + 
Sbjct: 486 LFVAGDPHQRIYDCRVSLRSLGIKVTGRSVKLRKNYRSTQEILRWSTALLVGRPIAQLED 545

Query: 484 --VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE-FLNFTLRNE 540
                 +           P          +      +SR        +    +  + R  
Sbjct: 546 ENRKDTLLGYRSALHGEGPS--VHAAETEEDELDALVSRVRAWRDAGVAAGDIGVSTRFN 603

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           +    ++  L +                 + VR+ T+H+ KGLE   V ++         
Sbjct: 604 KTCAKAVAHLKAAGIPAASLRAADPDGETDAVRVGTMHSFKGLEFRCVAVIGVHEGALPF 663

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                   +                               ++       LL+V  TRA D
Sbjct: 664 PKAITPLEVDP--------------------------QQHEADLLAERCLLFVACTRARD 697

Query: 661 QLIICKHSNTSN 672
            L +      S 
Sbjct: 698 SLHVSWTGERSP 709


>gi|325687713|gb|EGD29734.1| exonuclease RexB [Streptococcus sanguinis SK72]
          Length = 1093

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 87/861 (10%), Positives = 220/861 (25%), Gaps = 117/861 (13%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           LI  T   L   ++  + R K D +    L+D   +    Q         +F        
Sbjct: 89  LIYRTLTELDDGELKVYGRIKKDAQFIQQLMDLYHELQTAQMSFADL---EFLEEPEKRE 145

Query: 212 SPRTLFAV-------GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
               +F         GD   S      A+           +  A      F+       +
Sbjct: 146 DLVKIFTAVTAALNKGDFDSSSQIAAFAQHILAGDTDEELENLALAIDG-FTRFSAEEEY 204

Query: 265 ------RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
                 R   +I+  +    S         E +         R          + +    
Sbjct: 205 LVGLLHRKGVEIV--IGTYASQKAYRAAFREGNLYQASVDFLRKLAEDYQVKPDYISHAG 262

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-------NGKKRVI 371
                 +            +++       R    I   +                    +
Sbjct: 263 AEDAFGRISKVLESRYDFSEQAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDGV 322

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + KDI +L+    D     F  + + + Y+I         +  H  ++ + +L R     
Sbjct: 323 RYKDIRLLL---GDVEAYQFQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYN 379

Query: 432 EDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                 + +LK+ L+   +++++          +              S+ +  +  ++ 
Sbjct: 380 FQLEDLLNLLKTGLYGDLTQEELDHFEQYLRFADIKGAAKLAKDFTANSQGKFDLDRLNH 439

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQE 549
           +           F +          +F          D L   L    + EQ  +  + +
Sbjct: 440 IRRRVMTPLQDFFKSRSQTTSGLLAKFTEFVQVARLSDNLTALLQGESQQEQERHEEVWK 499

Query: 550 LISELEQYPPTIKRAH-----------------------SANHNEVRIMTVHTAKGLESP 586
             S + +    +                            A  + V++ +    + L +P
Sbjct: 500 AFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTVPATVDVVKVQSYDLIEPLAAP 559

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSL----------NDDPGIPIWIPQSKSRNNIVSDLI 636
            V+ +    + F      K  +                +  I       K+R   +S + 
Sbjct: 560 YVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAELQIASSENLKKNRYTALSLMN 619

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKH-------SNTSNEKKSNQRTWYDMVYDSF 689
              K+        +  V  + ++  L +                   +  ++  ++    
Sbjct: 620 SATKELVLSAPALVNEVEDSMSTYLLELTAAPISLPIIVKKPQASSDDIGSYRALLSQII 679

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
              +     + T        +A            +   +  K+L  E    + L +    
Sbjct: 680 ELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQISKELKTESLQSETLQALYPQ 739

Query: 750 DINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVI--FTL 796
             ++P  L+ S ++   +              E         + G+ +H++ + +     
Sbjct: 740 --DQPLRLSASALNEYFRHQYAYFLKYVLRLQEEWTIHPDARSHGIFLHRIFEKVLQEDS 797

Query: 797 PEHKRKNFITSYCT-----KNAKLWPAKEYKNLLLSIT--------RLLENPMMTTAMSC 843
                +    +        +   ++           +         R+L +P     +  
Sbjct: 798 SADFDRRLAQAMEETSRETEFESIYSESGQTRFARQLLLDTARATGRVLAHPTGIETIGE 857

Query: 844 DSY---SEVSVSGKINCPKKD-IIISGRIDQISISQQNIF------IFEYKTHHHVPQEI 893
           ++    +       +       + +SG++D+I      +       + +YK+        
Sbjct: 858 ETGFGSASKPF---LTLENGRAVTVSGKVDRI----DRLTKTESLGVVDYKSGDIKF-SF 909

Query: 894 EHIPYTHIAQLSIYEKILKDS 914
           E       +QL  Y   +++ 
Sbjct: 910 EKFFNGLNSQLPTYLAAIEEL 930


>gi|13474240|ref|NP_105808.1| hypothetical protein mll5084 [Mesorhizobium loti MAFF303099]
 gi|14024992|dbj|BAB51594.1| mll5084 [Mesorhizobium loti MAFF303099]
          Length = 1044

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/615 (9%), Positives = 164/615 (26%), Gaps = 54/615 (8%)

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS-NMIGTDTIFSNGK 367
           ++     +    +      +     +   Q ++     R +A  ++  +     +  +  
Sbjct: 357 EVTLLEAASERDEAVAIAVALKQAVEQPGQRAALVTGDRALARRVAVELKRFGVVADDSG 416

Query: 368 KRVIQAKDILVLVRKRKDT--PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              +       L+R   +        +       + +  +G +R  +     + +L+A  
Sbjct: 417 GTPLANSPAASLLRLALEAVFRPGDPVGLLSLLKHPLLGLGLERAAVRHAAELVELVA-L 475

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN--CGISKFQH 483
           R    + D +S   + ++ L    +D        R    ++ +     A     ++    
Sbjct: 476 RGGTGRPDIVSLPELFENRLIGLGDDSRPPFWFSRLTVRSIEDARSLLARLTEALAPLSA 535

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
              + +  +      S      L   A  G  +  +    +  + L E L   +    + 
Sbjct: 536 FRGHANADLAALVQASVVALENLGRSADGGLAELYA---GDAGEKLAELLRGLVAASASL 592

Query: 544 YSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
             +  E    ++    P   +        + I     A+  +  ++ +      V+  K 
Sbjct: 593 SFAASEWPDVMDALIAPETVKPAQGTDRNIAIWGALEARLQDVDMLVIGGLNEGVWPRKP 652

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                +   +     +     +     +     +                          
Sbjct: 653 ESDRFMSRLMKTGIDLEPPERRIGLAAHDFQMAMGARH---------------------- 690

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
           ++   S  S +  +    W   +     ND+     +  + +          +       
Sbjct: 691 VVLARSARSGDAPAVPSRWLQRLLTFIGNDQAATLRRRGDELLAWARELDTGAKQDFAPR 750

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
           P  +     +         +        +    IL        G   L++L+ D     R
Sbjct: 751 PQPKPPLAVRPTHFSVTEIESLRRDPYAVYARRIL--------GLMPLDALIRDPGAAER 802

Query: 783 GLIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT---------RLL 832
           G + H +L +    + + +  + +          +        + ++           ++
Sbjct: 803 GTLFHAILHLFSSEVADPRAPDALAGLIAAGRACFVEAALPADVEAVWWPRFEKLAANIV 862

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQ 891
           E            ++E      +   +  + +SG  D++ +       I +YKT     +
Sbjct: 863 EWERTRADAVTRRHAEERAGKTL-VGQSGVTLSGYADRVDLLAGGMADILDYKTGSSPSK 921

Query: 892 EIEHIPYTHIAQLSI 906
              H       QL++
Sbjct: 922 AQAHT--LLAPQLAL 934


>gi|289426255|ref|ZP_06428001.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|289153420|gb|EFD02135.1| UvrD/REP helicase [Propionibacterium acnes SK187]
          Length = 562

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 28/199 (14%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           P+ + + +++ +++    ++    Q+   + + +  +    +       L        E 
Sbjct: 111 PENDWVGEQLRQRNTPWNDR-GAIQNALRETKQQPFSDAAVE--AELERLGNVTALELER 167

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            +K+   L ++DL      +L        +          +++DE QD +  Q  ++  +
Sbjct: 168 LRKEEGRLTYDDLPRLAELIL----GYESVADLYATHFGAVVVDEFQDLTPQQLRIVNRI 223

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                         +     GD  Q IY F GA+P  + R             +   +IE
Sbjct: 224 ------------GYKRTTYGGDLVQGIYGFAGAQPLAIDR---------DIRAECTCVIE 262

Query: 260 LPLSFRSTADILTVVDKVF 278
              S RS+  +L  V+ + 
Sbjct: 263 FSESHRSSPAVLRTVNALI 281


>gi|325291477|ref|YP_004277341.1| double-strand break repair protein AddB [Agrobacterium sp. H13-3]
 gi|325059330|gb|ADY63021.1| double-strand break repair protein AddB [Agrobacterium sp. H13-3]
          Length = 1061

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/479 (8%), Positives = 103/479 (21%), Gaps = 55/479 (11%)

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL---ILGA 510
           +++       +   +  ++ A          ++               D+      ++ A
Sbjct: 512 WRLALPEGSVDAARDLARRIAVSTEPLGSAFVRRDRSGRSFTDKLPLSDWAERTGRVIEA 571

Query: 511 KKGRQ--QFISRFGNEVIDVLDEFL-NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                     + +  E  D L           E       Q              +  S 
Sbjct: 572 ICADDNNDLATLWSGEAGDKLSGLFGELMESGEILDADGPQWADIFAALVAGESIKPRSM 631

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            H  + I     A+      V +      ++  +      +  ++    G+         
Sbjct: 632 RHPRIFIFGALEARLQSVDTVVIGGLNEGLWPGQTANNPFLSRNMKTAIGL--------- 682

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                                ++ Y                     +   Q +   +   
Sbjct: 683 EPPERRIGQLAHDFEMANGTRQIFY--------------------SRALRQGSTPAVASR 722

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                  +      + + K       W+     +   E  +          +  K +S  
Sbjct: 723 WLQRLLALGGEDFADQLKKRGETYRHWAALMDASIDQEAAKR-PAPKPPADLQPKSYSFS 781

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ------VIFTLPEHKR 801
           +         +           L+    D    +RG + H +++       I   P    
Sbjct: 782 EVGRLRRDPYSIYARRILKLNPLDGFNRDPNAADRGTLYHAIIERYSREGHIPGTPASL- 840

Query: 802 KNFITSYCTKNAKLWPAKE------YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
              +     ++                         ++           S+ E       
Sbjct: 841 -EAMQRILDESFDAEDLPAHVDVIWRPRFEAVARAFIDWEKERHPSIRRSFFEAR--AGQ 897

Query: 856 NCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             P+  I ++G  D+I   +     I +YKT       +         QL++    L  
Sbjct: 898 EIPEAGIRLTGIADRIDIKTGGQADIIDYKTGLAP--SVNQARALLDPQLALEAAALMR 954


>gi|188582300|ref|YP_001925745.1| UvrD/REP helicase [Methylobacterium populi BJ001]
 gi|179345798|gb|ACB81210.1| UvrD/REP helicase [Methylobacterium populi BJ001]
          Length = 608

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 63/547 (11%), Positives = 150/547 (27%), Gaps = 85/547 (15%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                  +R  +   +       +   AK +      A  +   + F+   +  + +   
Sbjct: 115 EAIALSAVRSGYKAARNLSDEEKAEKRAKEVAERVRLA-TEEGKVCFD---LFADRVATL 170

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
              S  +R  I     +I++DE QDTS  QW V+++L            +  TL A+ D 
Sbjct: 171 LHGSDKVRALISTMYPYIILDEFQDTSADQWRVVQAL-----------GANSTLIALADP 219

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
           +Q I+ F GA+P+R+            +            + RS    +     +F    
Sbjct: 220 EQRIFDFIGADPERLNHFTAAFAPTVHDLAGD--------NHRSKGTEI----ALFGNDI 267

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                 ++    I                                             + 
Sbjct: 268 LTGKFRQNDYKGI----------------------------------DCALFESNPNQAY 293

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
           + L  ++      +I T     +          + +LV  +K T +++ + R    +   
Sbjct: 294 ASLVGQVLQARKRLIETGRSDWS----------LAILVPTKKMTRMVSDILREPFGN-VP 342

Query: 403 SVVGNDRFILTDHLAIKDLMALG---RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
            +       +   +   +++A     R      D+   +          +      +   
Sbjct: 343 PISHMAAVDMEGPILAAEIIAFLLQQRGHDGCFDEFVELMCSYFHGRGGATPTKGDMDEA 402

Query: 460 RHETETVYEYIQKFANCGISK----FQHVIKYIHELIHIAQFCSPHDFFTLILG--AKKG 513
               + + ++ +  A    +      Q        +  +     P   +  + G      
Sbjct: 403 ARFRKALSKWNECLAKGRPTPGNSVLQGTYAVHRAIAALTFTGDPGADWVAVRGVLDAGA 462

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL----EQYPPTIKRAHSANH 569
            ++            L E      +     +  +    + L    + +            
Sbjct: 463 CERLKDVAKEVRNVRLLERGTQLRQGLAQDWRDVSGYSNALAITRQSFVQEHFATAHKPE 522

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + + +M +H AKG +   V + +   + F  + +     + S N   G      Q+   +
Sbjct: 523 SGIVVMNMHKAKGKQFDEVVIFEGWPKRFKGEIVANPDRIVSGNVHDGAMTQARQNFRVS 582

Query: 630 NIVSDLI 636
              +   
Sbjct: 583 VTRARAR 589


>gi|113477646|ref|YP_723707.1| UvrD/REP helicase [Trichodesmium erythraeum IMS101]
 gi|110168694|gb|ABG53234.1| UvrD/REP helicase [Trichodesmium erythraeum IMS101]
          Length = 769

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +DF D I     L   ++V   +  K   ++  I IDE QDT L+Q E I+ L       
Sbjct: 393 IDFLDQIWL---LWHDQNVYKNVFNKWSNKLKVISIDECQDTDLLQIEFIKLL------- 442

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               SS   + AVGD  Q+IYSF G     +    +               + L  ++R 
Sbjct: 443 --HKSSNDFIIAVGDRFQAIYSFRGCLTDGIDVIAKKF---------NCDKMPLTTNWRC 491

Query: 267 TADILTVVDKVFSIPE 282
               L +V  ++   +
Sbjct: 492 GKKHLKLVRDIYPHID 507


>gi|33322858|gb|AAQ07165.1|AF496474_1 ATP-dependent helicase PcrA [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 145

 Score = 73.0 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 6/141 (4%)

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD 452
                 +  +           D   IKD+MA  + + +  D +SF  ++  P     +  
Sbjct: 1   MEETLVEANVPYQIVGGHKFYDRKEIKDIMAYLKLVANPSDSMSFNRIINVPKRGIGQAT 60

Query: 453 IFKICT-QRHETETVYEYIQK-----FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
             K+          +YE I+       ++    K       +   I  AQ  +  +    
Sbjct: 61  TSKLAAFADEMGGGIYEAIRNVELAPISSAAAKKLLAFSDQLTAAIAYAQDHTVSELTDX 120

Query: 507 ILGAKKGRQQFISRFGNEVID 527
           IL      +          ++
Sbjct: 121 ILEDFGYIKALKEEEAQGSLE 141


>gi|86743179|ref|YP_483579.1| UvrD/REP helicase [Frankia sp. CcI3]
 gi|86570041|gb|ABD13850.1| UvrD/REP helicase [Frankia sp. CcI3]
          Length = 809

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 78/279 (27%), Gaps = 72/279 (25%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                L   YE+ + +  VLD +D+++   DL         +R   D   + +++DEVQD
Sbjct: 509 RAVWELYERYEQLRTERGVLDRDDVLLLARDL---------VRESSDTRYDAVIVDEVQD 559

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            + +  +++ +   D   G         L  VGD +QSIY                    
Sbjct: 560 LTCVGLQLLHAFVGDKPDG---------LLVVGDGQQSIYPGG-------------FTLA 597

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                       L  ++R+   IL     V +                            
Sbjct: 598 EAGVAVVGRSTVLGRNYRNREKILRYAQAVVA---------------------------- 629

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
                   S  D     ++       D    E     ++  +A    +    + +     
Sbjct: 630 ------DDSFDDLDGVQERGRREVDVDRPGGEIREVTVSGTVA---QDAALCEHLVEFHD 680

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            R ++  D+ VLV           +         I  V 
Sbjct: 681 NRNVRYGDMAVLVPTNAAAARWLRVLTE----RGIPAVS 715


>gi|255692788|ref|ZP_05416463.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Bacteroides finegoldii DSM 17565]
 gi|260621505|gb|EEX44376.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Bacteroides finegoldii DSM 17565]
          Length = 1624

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 47/105 (44%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD S  +++++++L         T++    + AVGD+ Q+IY F G+  + + R
Sbjct: 1197 LVIDEAQDMSTDEYKLVKALM--------TNNEEMRMIAVGDDDQNIYEFRGSNSEYMHR 1248

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
              +    +           E+  ++RS   ++   ++        
Sbjct: 1249 LTKEPGSKF---------FEMTENYRSAHHLVNFANEFVKSIGKR 1284


>gi|50842338|ref|YP_055565.1| putative ATP-dependent DNA helicase PcrA [Propionibacterium acnes
           KPA171202]
 gi|50839940|gb|AAT82607.1| putative ATP-dependent DNA helicase PcrA [Propionibacterium acnes
           KPA171202]
 gi|315106961|gb|EFT78937.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1]
          Length = 562

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 28/199 (14%)

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
           P+ + + +++ +++    ++    Q+   + + +  +    +       L        E 
Sbjct: 111 PENDWVGEQLRQRNTSWNDR-GAIQNALRETKQQPFSDAAVE--AELERLGNVTALELER 167

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
            +K+   L ++DL      +L        +          +++DE QD +  Q  ++  +
Sbjct: 168 LRKEEGRLTYDDLPRLAELIL----GYESVADLYATHFGAVVVDEFQDLTPQQLRIVNRI 223

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                         +     GD  Q IY F GA+P  + R             +   +IE
Sbjct: 224 ------------GYKRTTYGGDLVQGIYGFAGAQPLAIDR---------DIRAECTCVIE 262

Query: 260 LPLSFRSTADILTVVDKVF 278
              S RS+  +L  V+ + 
Sbjct: 263 FSESHRSSPAVLRTVNALI 281


>gi|83859062|ref|ZP_00952583.1| hypothetical protein OA2633_11695 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852509|gb|EAP90362.1| hypothetical protein OA2633_11695 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 1017

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/562 (10%), Positives = 140/562 (24%), Gaps = 75/562 (13%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             ++         + ++V  +    L+D  +   L+ + +  L     L+F  +  SPLF
Sbjct: 375 RNLSRRVITEMARFGVTVDDSAGQPLSDTPSGAFLIRVLQAALDPGSALAFSALATSPLF 434

Query: 447 NFSED-----------------------DIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           +  E+                       D   +     +     E  ++     I     
Sbjct: 435 SLGEERAPLRGVLGTMERRALRGRRPGHDWDALYEHVRDAAGDDEDRRRRWGGIIEAMAT 494

Query: 484 VIKYIHELIH---IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL-NFTLRN 539
            +  +  L     +A +          L            +  +  +   + +  F    
Sbjct: 495 ALSPLSALEGDQPLAVWTRALVESAEALARNDEMAGADRLWATDAGENAAQLMREFMEEA 554

Query: 540 EQNSYSSLQELISE-LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           +     SL +     LE     + R     H  ++I+    A+  E+  V L      V+
Sbjct: 555 DALPPVSLHDFTRAVLETARSRLIRPRYGAHPRLQILGPLEARLAEADRVILAGLNEGVW 614

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                    +   +    G+     +     +  + L                 V +TR+
Sbjct: 615 PAPPKSDPFLSRGMRIAAGLSAPEERFGLAAHDFAQLACARD------------VTLTRS 662

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
           +            +   +    W   +          +              A     + 
Sbjct: 663 AKV----------DGAPTVASRWLWRLQTLARGALGERAQAALAPAQDYLGFA-----NA 707

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            + T  +      +     +   +  S  + +       +           L+ L     
Sbjct: 708 LDETAEQTMIRPPEPAPPVEARPRKLSVTQIETWIRDPYSIFARKILKLDKLDPLDRPAG 767

Query: 779 TFNRGLIIHKLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYKN--------LLLS 827
              RG   H  L+         E   ++ +               +              
Sbjct: 768 APERGTAYHAALERWVRSLGDTEILPRDALQRLLAHGQTALSEAGFSENALGVEMKRFER 827

Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSG----KINCPKKDIIISGRIDQISISQQNIF-IFE 882
           + + +       A   D ++  ++        + P     ++GR D+I +       I +
Sbjct: 828 VAQFMV--AFEEARREDGFTPAALEALGDISFDAPGGLFTLTGRADRIDLRPSGALDILD 885

Query: 883 YKTHHHVPQEIEHIPYTHIAQL 904
           YKT        + +      QL
Sbjct: 886 YKTGMPP--SAKEVAAGFAPQL 905


>gi|284802714|ref|YP_003414579.1| hypothetical protein LM5578_2470 [Listeria monocytogenes 08-5578]
 gi|284995856|ref|YP_003417624.1| hypothetical protein LM5923_2421 [Listeria monocytogenes 08-5923]
 gi|284058276|gb|ADB69217.1| hypothetical protein LM5578_2470 [Listeria monocytogenes 08-5578]
 gi|284061323|gb|ADB72262.1| hypothetical protein LM5923_2421 [Listeria monocytogenes 08-5923]
          Length = 1163

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 93/748 (12%), Positives = 195/748 (26%), Gaps = 169/748 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       IA  I  +               + +DI +L R   D  ++        
Sbjct: 313  QANNRRAEIEGIAREIRQLALNG----------YRYRDIAILTRNLGDYDVLCETVMEA- 361

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I    + +  +  H  I+ + +    IL + + +  F  +     F+ +E      
Sbjct: 362  --YNIPTFIDKKRAMAKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNR 419

Query: 453  --------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIKY---IHELIHIA 495
                          I        E + +Y  I+  +   + +    I     I+E+ ++ 
Sbjct: 420  RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLI 479

Query: 496  QF-CSPHDF--------FTLILGAKKGRQQF--------------------ISRFGNEVI 526
                S  +             L      +Q                     ++R   +  
Sbjct: 480  VNPLSTLELNLRKAKTGMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAW 539

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              +   L+  +         L      +              + ++V +  +  AK L+ 
Sbjct: 540  SSISALLDEFVEVLGEETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDM 599

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V+F +     V   +   K        D         +  ++NNI              
Sbjct: 600  KVIFAIGMNDGVMPLRQKDKGIFSDQDRDALRAEDSKLKPSAKNNIG------------- 646

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E + L Y  ++  SD+L +   +     K  ++  +   +   F+       +   + ++
Sbjct: 647  EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFNELNESVYLTDPSLLS 706

Query: 706  KDE-------------------------------WIAYEWSTHHPENTPLEREETIKQLM 734
              E                               W     S    E   +  ++ +  L 
Sbjct: 707  DAEQSSYIRSKQATLGLLTSQLQMYKRGYTLSSVWWDAYNSYFENEKESIMAKQVLSSLY 766

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
             E K      +  KN   E    + S ++                  E      Q  + G
Sbjct: 767  YENKTKPLQETTAKNLFGETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQLQAVDMG 826

Query: 784  LIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
             I H  ++ I    +       N     C + AKL        +   I   L +  M   
Sbjct: 827  EIFHGAMEWISAELKRNNLDWGNLKEEECKQMAKLAMTFLAPKIQHEIL--LSSKRMEYI 884

Query: 841  M------------------SCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
                                  ++  V +                     ++++ GRID+
Sbjct: 885  QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDR 944

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL 923
            I  +       + I +YK+  H    +  + Y    Q+  Y  I+         K+    
Sbjct: 945  IDMAEQDDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPA 1003

Query: 924  --LIYVSEPKVF----IIPQNKLNKAFA 945
              L +    +       +    + K   
Sbjct: 1004 GVLYFHMHNQYVQAEKELSDEAIAKELQ 1031


>gi|300727000|ref|ZP_07060420.1| putative DNA helicase [Prevotella bryantii B14]
 gi|299775723|gb|EFI72313.1| putative DNA helicase [Prevotella bryantii B14]
          Length = 1563

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 59/134 (44%), Gaps = 22/134 (16%)

Query: 151  DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
            D++    +++++ +V A    K     + ++IDE QD     + ++RSL +         
Sbjct: 1143 DVVRLAAEMIERGEVEASKIAK-----SVLVIDEAQDMGEDDFRLVRSLMK--------Q 1189

Query: 211  SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
            +    + AVGD+ Q+IY+F G++ + +     +         +   + E+  ++RS   I
Sbjct: 1190 NEDMRVIAVGDDDQNIYAFRGSDSRYMQSLVEL---------EGTKLYEMTENYRSDKAI 1240

Query: 271  LTVVDKVFSIPENA 284
            +   ++      + 
Sbjct: 1241 VDCANRFVQRIPDR 1254


>gi|254420230|ref|ZP_05033954.1| hypothetical protein BBAL3_2540 [Brevundimonas sp. BAL3]
 gi|196186407|gb|EDX81383.1| hypothetical protein BBAL3_2540 [Brevundimonas sp. BAL3]
          Length = 1031

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/431 (11%), Positives = 121/431 (28%), Gaps = 39/431 (9%)

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
            + A   +    FT ++    G+  +    G     +L   +       +   + L EL 
Sbjct: 532 RNGADLNAAASAFTRLIETLAGQDAWAGPDGEAAAALLSGLIEGGASLGRIDQTDLAELT 591

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           + L     T+ R   A H  +RI+    A+ + +  + L      V+         +   
Sbjct: 592 TSL--VRETVVRTGGATHPSLRILGAIEARLVRADRMILAGLEEGVWPQAAPTDPFLSRP 649

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           +    G+P    +                                  +D++I+       
Sbjct: 650 MRKALGLPPPERRLGQTAQDFVQAA---------------------CADEVILVHSERRG 688

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
            +     R  + +   +         I+L       +W         P   P   +    
Sbjct: 689 GQPAVRSRWLWRLEMLTRGAHSAETPIELPRPRTVLDW--TRALDAPPPGPPRFAKRPEP 746

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
           +    ++      + I+  + +PY +    +   G   +E   +  +   RG  +H  ++
Sbjct: 747 RPPVHRRPRSLYVTRIERWVRDPYAIY--ALWVLGLEAMERPGASAEALARGNAVHAAIE 804

Query: 792 VIFTLPEHKR----KNFITSYCTKNAKLWPAKEYKNLLLS------ITRLLENPMMTTAM 841
            +            +  +  +  +       ++      +         L +      A 
Sbjct: 805 RLTLDWPDDLPDDCEAVLHDHLLRELGARGFEDAAMAREAPLARNCARWLTDFERRRRAR 864

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
             D   E   +   + P     +    D+I ++     + ++KT        + +     
Sbjct: 865 GIDILVEQQGTMTFDAPAGPFTVKAFADRIELASDGAAVMDFKTGAAP--SAKQVKSGFA 922

Query: 902 AQLSIYEKILK 912
            QL++   IL 
Sbjct: 923 PQLTLTAAILA 933


>gi|313617558|gb|EFR89884.1| ATP-dependent nuclease subunit B [Listeria innocua FSL S4-378]
          Length = 1157

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 73/737 (9%), Positives = 176/737 (23%), Gaps = 147/737 (19%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       +A  I  +      + +         D  +L     ++  I       +
Sbjct: 307  QANNRRAEMEGVAREIRQLALNGYRYRDIAILTRNIGDYDILCETVMESFDIPIFIDKKR 366

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRF------------------------------ 427
               K   +   R  +   L       + +                               
Sbjct: 367  AMAKHPFIEFIRSSIDAILFNWKYEPIFQAVKTEFFFDVAGNATIMRRKADILENYVLEN 426

Query: 428  -ILSQEDDLSFVCMLKSPLFNFSEDDI---------FKICTQRHETETVYEYIQKFANCG 477
             I ++         +   +   S + +           +  +            +     
Sbjct: 427  GIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEELATQSVINEMRNLIVEPLSTLENNITK 486

Query: 478  ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
                      ++  +   +     + +  +       +  ++R   +    + E L+  +
Sbjct: 487  AKTGIEFAMALYHYLEQVKAVEHLESWRQVAEENGYLE--LAREHEQAWSSISELLDEFV 544

Query: 538  RNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                     +      +              + ++V +  +  AK L   V+F +     
Sbjct: 545  EVLGEEELDVNSFSEIITTGLDALEFSLLPPSLDQVVLADMENAKLLNMKVIFAIGMNDG 604

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            V   +   K  +     D   +     +  ++NNI              E + L Y  M+
Sbjct: 605  VMPLRQKDKGILSDQDRDSLRVENSNLKPSAKNNIG-------------EEDLLAYKIMS 651

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
              SD+L +   +     K  +   +   +   F N      +   + +N  E  +Y  S 
Sbjct: 652  LPSDKLFLSYPAADEEGKVLSXXXYLRKIKGQFKNLNESVYLTDPSLLNDKEQSSYIRSK 711

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL------------------- 757
                     + +  K+      +    ++    D  E                       
Sbjct: 712  QATLGLLTSQLQMYKRGYPLSNVWWDAYNSYFEDSKESEAAKQVLSSLYYENKTKPLQET 771

Query: 758  ------------NPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVIF 794
                        + S ++       +                 Q  + G I H  ++ I 
Sbjct: 772  TAKNLFGENIHASVSRMEKFFSCEFQHFAQYGLKLEERAHYKLQAVDMGEIFHGAMEWIS 831

Query: 795  ---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM---------S 842
                       N     C + AKL        +   I   L +  M             +
Sbjct: 832  AELKRTNRDWGNLTEEECRQMAKLAMTFLAPKIQHEIL--LSSKRMEYIQYKLLQIITRA 889

Query: 843  CDSYSEVS---------VSGKINCPKK------------DIIISGRIDQI--SISQQN-- 877
                +E +         +                     ++++ GRID+I  +       
Sbjct: 890  TTVLNEQAKSSAFRPIGLEVDFGLKGDIPPLKIPLQSNSELLLQGRIDRIDAAEQDDRTF 949

Query: 878  IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL--LIYVSEPKV 932
            + I +YK+  H    +  + Y    Q+  Y  I+         K+      L +    + 
Sbjct: 950  LRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQY 1008

Query: 933  F----IIPQNKLNKAFA 945
                  +    + +   
Sbjct: 1009 VQAEKELSDEAIARELQ 1025


>gi|152983232|ref|YP_001352719.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille]
 gi|151283309|gb|ABR91719.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille]
          Length = 573

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 20/146 (13%)

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               I   + +   H+L+DE QD  L+   ++  L            +   +  +GD  Q
Sbjct: 193 DQPLILRALVRRYPHVLVDESQDIGLLHQAILELLMR----------AGVQVSLIGDPNQ 242

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           SIY F GA         R   +R     ++ +   L  ++RS   I  + + +    +  
Sbjct: 243 SIYEFAGAN----GMFLRDYHRR-----EEVTAFSLTRNYRSRPSIQAIANHISGRNDEP 293

Query: 285 QGLSEDSTTTIRHRSSR-IGQVGTVQ 309
               +  T  +           G + 
Sbjct: 294 HRPIDPGTHGVYFIGYSNPELPGLLD 319


>gi|126698624|ref|YP_001087521.1| ATP-dependent nuclease subunit B [Clostridium difficile 630]
 gi|122379796|sp|Q18AP0|ADDB_CLOD6 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|115250061|emb|CAJ67881.1| ATP-dependent nuclease subunit B (ATP-dependent helicase addB),
           Superfamily 1 UvrD-family [Clostridium difficile]
          Length = 1155

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 105/917 (11%), Positives = 245/917 (26%), Gaps = 204/917 (22%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   +E    +   +D         D+L        +   +D     + IDE    +  Q
Sbjct: 164 IYNSFEGKLHE-NYVD-------AQDMLTSLTSKIELSSYLDG--ACVYIDEFTGFTPNQ 213

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           + VI+S+           S    +    D+   I     ++     R K    K      
Sbjct: 214 YNVIKSIL--------NKSKSVNISLTVDD---INYIGYSKSDMFSRTKFTYSKLTQLCN 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           ++   I   ++         +   V    E  + L                    ++ + 
Sbjct: 263 EEGIKILPQVN---------LNTGVIKRFEKVKELQH------------------LERFY 295

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
                       +      + +   +          IA  I +++           + ++
Sbjct: 296 NAYPYKIYSNPTENIKIKEFNNLYSEVEE-------IAREIVHLVRD---------KNVR 339

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
            +DI +  R   D     FL   + N+Y I    + +     +  +  +++       + 
Sbjct: 340 YRDITIATR---DLNRYDFLVHSIFNEYNIPNFIDKKREAKSNPIVILIISALEMKNRRY 396

Query: 433 DDLSFVCMLKSPLFNFSEDDI-----------------FKICTQRHETETVYEYIQKFAN 475
              +    LKS L     DDI                 F        T+++     +F  
Sbjct: 397 GYETMFRYLKSGLIGIDNDDINLLENYVLANGIKGKKWFDEKWDYRITQSLSGQESEFEL 456

Query: 476 CGISKFQHVIKY---------------------IHELIHIAQFCSPHDFFTLILGAKKGR 514
               K   +                           +       +  +    ++   K +
Sbjct: 457 ELKEKINEIKNRVLEPIVILQEKLRGKNRVKEICRYIYEFLLDINMPETIESLIVNFKDK 516

Query: 515 QQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEV 572
            +  ++   ++V D++ + L+  +    +   SL++ I  +       +        ++V
Sbjct: 517 GELDVANQYSQVWDIVVDILDQMVELMGDEIISLEKFIKLITLGFDEYELGLVPPSIDQV 576

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            + +V   K  ++  ++LV T   VF         +  +  +  G         S+    
Sbjct: 577 LVSSVDRMKNPDTKYLYLVGTTDGVFPLITKDSGILSDNDRESLGNKGIEVDIDSKTRSF 636

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                        E   L+Y  +T  S  L I    +    K          +   F N 
Sbjct: 637 -------------EEQFLVYKALTSTSKNLTITYPISDHEGKTLRPSIIISRLKKIFPNI 683

Query: 693 ERVKKIKLTN-SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
           E    +   N + +KD        +          +       + ++I        +  +
Sbjct: 684 ENKSYLVEENKNTDKDILKKITVKSPTFNELINVIKNYDSDGYNTEEINSIWLDIYRYYL 743

Query: 752 NEPYI---------------------------------LNPSTIDTKGKTNLESLLS-DN 777
            +                                    L+ S ++   +      +    
Sbjct: 744 KDEIYSSITKKVIKGLSYTNQVHKIEEKKIRSLYKSNSLSISRLEKYAECPFAYFIQYGL 803

Query: 778 QTFNR----------GLIIHKLLQVIFTLPEHK---RKNFITSYCTKNAKLW-------- 816
           +   R          G  IH +L              ++    Y      +         
Sbjct: 804 KAKKRKEYSFTPPDLGTFIHNILDRFSKELLQDNLTWRDIDEKYIELKIGIIVDEIILKI 863

Query: 817 ------PAKEYKNLLLSITRLLENPM--MTTAMSCDSYSEVSVSGKINCPKK-------- 860
                  ++ YK L   +  +L   +  ++  +   S+  +    K     K        
Sbjct: 864 PGYILNSSERYKYLAYRLKNMLTTAITIISQQIKQGSFEPIDYEVKFGDNGKYPPIKMVL 923

Query: 861 ----DIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL- 911
               ++ + G+ID++   ++     I I +YK+  +    +  I Y    QL +Y   + 
Sbjct: 924 ENGQEVSLIGQIDRVDEFEEGENKYIRIIDYKSG-NKSISLTEIYYGLQLQLLVYLDAIL 982

Query: 912 -KDSYPNKSLV-CLLIY 926
                 + ++    ++Y
Sbjct: 983 ESAKDEDMNINPAAILY 999


>gi|229030493|ref|ZP_04186531.1| UvrD/Rep helicase [Bacillus cereus AH1271]
 gi|228730837|gb|EEL81779.1| UvrD/Rep helicase [Bacillus cereus AH1271]
          Length = 691

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    +   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAQIPVGLA 553


>gi|269125655|ref|YP_003299025.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
 gi|268310613|gb|ACY96987.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183]
          Length = 708

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 66/264 (25%), Gaps = 34/264 (12%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           L +      +        +      A         A +E     +       L +   +L
Sbjct: 388 LAQGITSLEEYLRASRAGRGVALRAAQREQVWRAVAEFERQLAADGRCTHLQLCLRAAEL 447

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L                  H+++DE QD    QW V+R                  LF  
Sbjct: 448 LAADGP----------RYRHVVVDEAQDLHPAQWRVLR---------NAVAEQSDDLFIA 488

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q IY                   R+           L L++RST +ILT    + +
Sbjct: 489 GDPHQRIYDTR-------------VSLRSLGINVSGRSARLRLNYRSTQEILTWAAGIMT 535

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                    ++   T+    SR+     V +      +       +   W          
Sbjct: 536 --GERVEALDEGIDTLADYRSRLRGSRPVLVSAGTQPEELDALVEKVRQWLEAGVEPSDI 593

Query: 340 SSASILARRIAYTISNMIGTDTIF 363
           + A+      +     +       
Sbjct: 594 AVAARFREFGSRAADRLKDAGIPV 617



 Score = 43.0 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 77/288 (26%), Gaps = 56/288 (19%)

Query: 414 DHLAIKDLMALGRFILSQEDDL--SFVCMLK------SPLFNFSEDDIFKICTQRHETET 465
             L   D       ++ +  DL  +   +L+      S     + D   +I   R    +
Sbjct: 445 AELLAADGPRYRHVVVDEAQDLHPAQWRVLRNAVAEQSDDLFIAGDPHQRIYDTRVSLRS 504

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF---- 521
           +   +   +      ++   + +     I            I      R +         
Sbjct: 505 LGINVSGRSARLRLNYRSTQEILTWAAGIMTGERVEALDEGIDTLADYRSRLRGSRPVLV 564

Query: 522 --GNEVIDVLDEFLNFTLRN-----EQNSYSSLQELISELEQYPPTIKRA---------- 564
             G +  + LD  +    +      E +  +          +    +K A          
Sbjct: 565 SAGTQPEE-LDALVEKVRQWLEAGVEPSDIAVAARFREFGSRAADRLKDAGIPVVLLKDG 623

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              +   VRI T+H  KGLE   V ++    +    +                       
Sbjct: 624 PDPSAEGVRIATMHAMKGLEFRCVAVIGVTERALPLQAAVTP------------------ 665

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                   +++ +   +        LL+V  TRA ++L +  H   S 
Sbjct: 666 --------AEIDRVQHEIDMLAERSLLFVACTRAREELYVSWHGTPSP 705


>gi|23098636|ref|NP_692102.1| ATP-dependent deoxyribonuclease subunit B [Oceanobacillus iheyensis
           HTE831]
 gi|81746700|sp|Q8ERW6|ADDB_OCEIH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|22776863|dbj|BAC13137.1| ATP-dependent deoxyribonuclease subunit B [Oceanobacillus iheyensis
           HTE831]
          Length = 1166

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 78/715 (10%), Positives = 196/715 (27%), Gaps = 156/715 (21%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
              P           + +          IA  +  +I              + +DI +L+
Sbjct: 301 DSRPAPAYEGEVPIEIFEAVHPRAEVEGIAQQVLELIRD---------NRYRYRDIALLI 351

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
           R      +   L   + NDY++ V  +++  +  H  I+ + ++   +     + +   +
Sbjct: 352 R---QPEVYHDLIETIFNDYELPVFIDEKRPMLHHPLIELIRSILEVVQGNWRNDAIFRV 408

Query: 441 LKSPL-------FNFSEDDIFKI------------CTQRHETETVYEYIQKFA-NCGISK 480
           LK+ L       F  + D I ++                 E +  Y+  + F  +    +
Sbjct: 409 LKTGLIPSADDEFPLTMDSIDQLENYVIEFGIRSRHQWIGENKWKYQRFRGFDSSAQTDR 468

Query: 481 FQHVIKYIHELIHIAQF------------CSPHDF---FTLILGAKKGRQQFI------- 518
            + + + ++                     +  D        L   K   Q         
Sbjct: 469 ERELQESMNRYRDQVISAIATVDEQLRAATTVKDLCIAMYQWLEELKIPDQLEVTRKYYD 528

Query: 519 -------SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-N 570
                   R   +V D + +  +  +         L      L+    T++ +H     +
Sbjct: 529 DQGLPEKGREQEQVWDAVIQLFDEMVEIAGEEKMDLSVFQVALDAGIETLQFSHVPPSMD 588

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            + + T+  ++       FL+     ++  K          +++   + +     K  + 
Sbjct: 589 HIIVGTIDRSRMSNIRCAFLLGVNEGIWPMKPTSD----GMIDEAERLLLEQNGLKLADT 644

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                     +    +    +Y+  T A D+L I    +    K          V + F 
Sbjct: 645 S---------ERQLLDDWFYMYLAFTVAKDRLKISYLLSDEEGKAKMPSQLIHRVEELFP 695

Query: 691 NDERVKKI-KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD-EQKIPKKLFSPIK 748
             +    +    +  N   +++ E  +       L + +    +     ++ +       
Sbjct: 696 ATKNHILLQDPEDESNTRRFVSTELKSRSALTAQLAKFKKGYPIDPIWWEVYQWYVEHHP 755

Query: 749 NDINEPYIL---------------------------NPSTIDTKGKTN-----------L 770
                  +L                           + S ++T  + +            
Sbjct: 756 QGGTTHRVLQGLHYENKPESLQKDTVEQLYPKRIQASVSRLETYYRCSYQHFAKYSLNLE 815

Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHK-----------------RKNFITSYCTKNA 813
           E         + G + H+ L+ I      +                 R     S   ++ 
Sbjct: 816 ERRTYKLDAPDIGQLFHEALKKITEWIHAEGNDFSALTKSQSSHYANRAVTELSPVLQHQ 875

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY----SEVSVSGKINCPKKDI------- 862
            L  +  Y  +   +  ++        +   +     S V +          I       
Sbjct: 876 ILHSSNRYAYIQKKLEEVIARATF--VLGEQARLSHFSPVGLELGFGDGNNQIPSLSMLL 933

Query: 863 ------IISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                 ++ GRID++  +  + N++  I +YK+      ++  + Y    Q+  Y
Sbjct: 934 ENGYELVLRGRIDRVDKAELENNLYLRIIDYKSS-SKGLDLTEVYYGIALQMLAY 987


>gi|118444500|ref|YP_877734.1| superfamily I DNA helicase [Clostridium novyi NT]
 gi|118134956|gb|ABK62000.1| superfamily I DNA helicase [Clostridium novyi NT]
          Length = 761

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 27/142 (19%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           KKN V+D +DL       LK +       Y I+++  HI+IDE QD S +Q EVIR    
Sbjct: 504 KKNSVIDSDDL--AAIMYLKSK------LYGINKKFKHIVIDEAQDYSFLQMEVIR---- 551

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                    S   ++  VGD  Q IY + G     +   +++ +    N   + S + L 
Sbjct: 552 -------EFSVNNSMTIVGDVGQGIYYYKG-----IEDWQKVIKDIFKN---EVSYVSLT 596

Query: 262 LSFRSTADILTVVDKVFSIPEN 283
            S+RST +I+ V +KV     N
Sbjct: 597 QSYRSTIEIIEVANKVLEKQNN 618


>gi|269956281|ref|YP_003326070.1| RecB family exonuclease-like protein [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304962|gb|ACZ30512.1| RecB family exonuclease-like protein [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 302

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 75/246 (30%), Gaps = 24/246 (9%)

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
                P+E  E  + +   + +     SP     +         +  + +         +
Sbjct: 6   PVRAQPVEPVEPAEAVRPVEPVAASPRSPA-LSPSRANDFMQCPLLFRFRMIDRLPEPPS 64

Query: 778 QTFNRGLIIHKLLQVIFTLPEHKR-KNFITSYC-TKNAKLWPAKEYKNLLLSITRLLENP 835
               RG ++H +L+ ++  P  +R  +        +  +L  ++     L +     E  
Sbjct: 65  PAAARGTLVHSVLERLYDAPLGERTPDAALRLVPDEWRRLLESEPRYQELTAGDGWTEED 124

Query: 836 MMT----------TAMSCDSY----SEVSVSGKINCPKKDIIISGRIDQISISQQNIF-I 880
                        T    +       E+ V  ++       ++ G +D++ ++      +
Sbjct: 125 WFGGAGRLLHTYFTLEDPNRLQPEARELRVEHRLADGP---LLRGIVDRLDVAPDGALRV 181

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKL 940
            +YKT        E      + Q+  Y  +L         +  L+Y+ + +V      + 
Sbjct: 182 VDYKTGKSPRPGYESNA---LFQMRFYGLVLWRERGVLPKMLQLVYLGDGQVLRAEPRER 238

Query: 941 NKAFAE 946
                E
Sbjct: 239 ELELTE 244


>gi|220934454|ref|YP_002513353.1| DNA helicase/exodeoxyribonuclease V, subunit B [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995764|gb|ACL72366.1| DNA helicase/exodeoxyribonuclease V, subunit B [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 958

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 61/560 (10%), Positives = 137/560 (24%), Gaps = 77/560 (13%)

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-FNFSEDDIFKICTQ 459
            I +     + L+   A   L      +    +    + +LKSP  F    ++      +
Sbjct: 351 GIDLDDPGGWALSTTRAAAALERWLEALEEDFEYQPLMDVLKSPFVFPERTEEHLFAVYR 410

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQF 517
             +   + E I +             + +      +     S  D         +G  + 
Sbjct: 411 LEQDVMLRENIPRNLARMREHLFKRARRLGPASERSTRAVASLLDALEEAAVPFRGLVRG 470

Query: 518 ISRFGNEVIDVLDE-------------------FLNFTLRNEQNSYS-----SLQELISE 553
            +R   + +  L E                    L        +  S       +E  + 
Sbjct: 471 AARPAGDWLAALQESLRRLGMQASLEADPAGRRLLEEVRAMAADLGSRPLSMDWREFRTW 530

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           L +   T           VR+M++          + +     +        +      + 
Sbjct: 531 LGRVLETRHFRPHPRPAPVRLMSLGETALARFDALIIAAADGEHLPGHEPVRALFNDGVR 590

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              G+  W  +   +      L++                    A+ +++I         
Sbjct: 591 HALGLEAWHDRVARQQGRFRRLLE--------------------AAPRVLITWQRERGGG 630

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            +         V              L +   +      +     P+  PL         
Sbjct: 631 PQRPAP----WVELIDAFHRLAWGAPLRDEALEAWLKTPDALVQSPDTAPLPATPQRPAP 686

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
           +          S   +                G    E L       + G  +H  LQ  
Sbjct: 687 LLPAAHVPAKLSASAHQDLIDCPYRFYAARGLGLAPPEELAEALSKADYGERVHLCLQAF 746

Query: 794 FTLPEHKR-----------KNFITSYCTKNAKLWPAKEYKN------LLLSITRLLENPM 836
                              +    +     +K    K+ ++       L     L+   +
Sbjct: 747 HGGTPELPGPWQGPLDEAHRAEAQTLLETISKAVFEKDLEDNFMHRGWLARWRALIPAYL 806

Query: 837 MTTAMSCDSY----SEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
                  +++    +EVS    +       ++ GR+D++   +    + +YKT     Q 
Sbjct: 807 DWAIERAEAWQVQDTEVSREVALAT---GTVLKGRLDRVDAGEAGQGVIDYKTGTPPAQ- 862

Query: 893 IEHIPYTHIAQLSIYEKILK 912
            + +      QL  Y  +L+
Sbjct: 863 -KEVDAGEAVQLPTYALLLE 881


>gi|255323064|ref|ZP_05364200.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255299926|gb|EET79207.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 860

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/563 (10%), Positives = 150/563 (26%), Gaps = 89/563 (15%)

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
           F  +LK  +   ++     +    ++    +E+     +     F+              
Sbjct: 308 FFQILKCMVTAINDKIRVNLSEDNYKNFNEFEFNLHEFSVSGELFEKFKNSFE---APCS 364

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL---NFTLRNEQNSYSSLQELISE 553
           F         IL         +           +E     +             +  + +
Sbjct: 365 FEDFRALMEEILA--------LESDHPAAQKTREELFYAQSLARYFSFTLRQICEIFLIK 416

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           L +              ++ +M V  ++GL+   V ++D    +   + + +M +   + 
Sbjct: 417 LARLRLDHV-----GGGKIGVMGVLESRGLKFEGVIVLDFNDDLVPKRSVNEMFLSSRVR 471

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ----EEYN-------RLLYVGMTRASDQL 662
              G+  ++ +   +      LI   KK+       E             V   R SD+ 
Sbjct: 472 QKAGLIGYVDRENLQRFYYESLIGGAKKAAICYAANEEKIASRFLGEFNAVEDARFSDES 531

Query: 663 IICKHSNTSNEKK------------SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
                +   + K             +      +          + + +        +  +
Sbjct: 532 YAALFNGEFDAKADFADEQNFEGEINPSLDEKNEAKPGQMKIAKERSLFEFGEAESELNL 591

Query: 711 AYEWSTHHPENTPLEREETIKQL----MDEQKIPKKLFSPIKNDINEPY-ILNPSTIDTK 765
           A ++     +N  L  ++    L          PK     I    +     L+ S ++T 
Sbjct: 592 ADKFDEKAAQNKTLSEKQQAVNLINFTRKMPAKPKIFEQDIIVKHDFFAIPLSFSRLNTY 651

Query: 766 GKTNL------------ESLLSDNQTFNRGLIIHK-LLQVIFTLPEHKRKNFITSYCTKN 812
            +                 +       + G  +H+ L +                   K 
Sbjct: 652 LQCPRRYYYRYILGVKPPVMPQTASAADFGNSLHRALFEYYSKFDRFD--------LAKF 703

Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRID 869
             +        L   I  +++               +    +  +++     + I+G+ID
Sbjct: 704 ETVLRELNTPPLEREI-TMIKMEKFKAVEDARYESGWRVKGLEKELDSVFAGVRITGKID 762

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
           +I +    + + +YK+     +           QL  YE ++      +        + +
Sbjct: 763 RIDVCGGELAVIDYKSGKFDAKS---------LQLPFYEALV-----GRPCEGYFYDLKD 808

Query: 930 PK-VF--IIPQNKLNKAFAEIST 949
              +       + L +A  ++ +
Sbjct: 809 NMNLVAGEASTDALAEAIEQLKS 831


>gi|256820664|ref|YP_003141943.1| hypothetical protein Coch_1837 [Capnocytophaga ochracea DSM 7271]
 gi|256582247|gb|ACU93382.1| conserved hypothetical protein [Capnocytophaga ochracea DSM 7271]
          Length = 909

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 58/460 (12%), Positives = 121/460 (26%), Gaps = 81/460 (17%)

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVL---------DEFLNFTLRNEQ-----NSYSSLQ 548
             TLI  A     +  ++   E    L          +  N   + ++     +S  +L 
Sbjct: 419 IITLIDNAITLIYRLKAQIDPESNTHLLTQEYAYRFFQLFNQLKQLQEQYGYIDSVKTLY 478

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                L+    +           +++M V  ++ L+   V +      V          I
Sbjct: 479 HF--YLDVLQKSSLNFRGEPLEGLQVMGVLESRSLDFERVIITSVNEGVLPLGKSDNSLI 536

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
              +  +  +P +                         Y+   Y  + RA    +     
Sbjct: 537 PYDVKYELELPTYK-------------------ERDAVYSYNFYRILQRAKQVHLFYDTE 577

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
             S + K   R    ++ +     + V +IK                       P+  ++
Sbjct: 578 MNSLKSKEKSRFILQLLAEKIPTHKVVHQIKAPEVYPAVL-------------RPINIKK 624

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
           T   +   + + +K  SP          L             + +    +    G I+H 
Sbjct: 625 TTSVIDALKALAEKGISPSALTTYIRNPLTFYEQQVLQVYEEKEVEETVEARTFGNIVHG 684

Query: 789 LLQVI--FTLPEHKRKN-----------FITSYCTKNAKLWP-----AKEYKNLLLSITR 830
           +L+ +    L E   +             I     +  +             N++    R
Sbjct: 685 ILEDLYTPFLNEILTEEHIKKMQLLVLPTIEKRFEEEYRSTDFRTGKNWLIFNVIEKYVR 744

Query: 831 LLENPMMTTAMSCDS----YSEVSVSGKINCPKKDIIIS--GRIDQISISQQNIFIFEYK 884
                 +    S       Y E  +           +++  G ID++      + I +YK
Sbjct: 745 SFLTLELNEIKSGIEIIPLYLEQKIKIPFQASHLPFLVNFKGIIDRVDRRNGVLHIIDYK 804

Query: 885 THHHVPQE---------IEHIPYTHIAQLSIYEKILKDSY 915
           T      +         I  I Y    QL  Y  ++   +
Sbjct: 805 TGIVEETDVRIKDWNNLITDIKYGKAFQLLTYAYMITQHF 844


>gi|222478641|ref|YP_002564878.1| UvrD/REP helicase [Halorubrum lacusprofundi ATCC 49239]
 gi|222451543|gb|ACM55808.1| UvrD/REP helicase [Halorubrum lacusprofundi ATCC 49239]
          Length = 614

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 63/190 (33%), Gaps = 35/190 (18%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +   K  N ++ F D++                   +   +++++IDE QD + +Q+
Sbjct: 189 IRAWRGYKGDNDLVGFADMLERVAQ------------RSLVPNVDYLIIDEFQDITTLQY 236

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            V                  R +   GD+ Q +Y++ GA+P  +L               
Sbjct: 237 NVFEEW----------EPHMRKVLIAGDDDQVVYAWQGADPDLLLD------------TD 274

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               + LP S+R  ++IL VV+      +  Q              + I     ++L   
Sbjct: 275 VDEDVVLPNSYRLPSEILNVVNAEIRHIDKRQEKDLHPRKEGGSVEA-IQSPSMLELVRN 333

Query: 314 VVSQHDSQCN 323
           V    D    
Sbjct: 334 VRYTVDDDEG 343



 Score = 38.7 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 17/101 (16%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLV-DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             A+   VR+ T+H+AKG E+  VF+  D   +V                 +       P
Sbjct: 486 EGADPTRVRVGTIHSAKGREADHVFVATDLTEKVVEQMAASIDDPTDVDGIEEFTKTTSP 545

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                +N                  R+ YVGM+RA ++L+I
Sbjct: 546 VPVLTDN----------------ERRVFYVGMSRARERLVI 570


>gi|85858661|ref|YP_460863.1| ATP-dependent DNA helicase [Syntrophus aciditrophicus SB]
 gi|85721752|gb|ABC76695.1| ATP-dependent DNA helicase [Syntrophus aciditrophicus SB]
          Length = 606

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 26/165 (15%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    + F+     T D+L+       IR  I      I++DE QDT++ QW V+++L  
Sbjct: 152 RIEGCVCFDLFAQYTGDILQGS---KRIRKLIATMYPVIILDEFQDTNVEQWRVVQAL-- 206

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                         L A+ D +Q IY + GA+PKR+   K               +    
Sbjct: 207 ---------GEHSILLALADPEQRIYDWIGADPKRLSHFKDAF--------APTEVDLST 249

Query: 262 LSFRSTA-DILTVVDKVFS---IPENAQGLSEDSTTTIRHRSSRI 302
            + RS   DI+   + + +     E  +G+  D  T   +++   
Sbjct: 250 DNHRSAGIDIVAFGNDILTGKFREEPYRGVQIDVYTPNFNQAFSA 294


>gi|296132524|ref|YP_003639771.1| ATP-dependent nuclease subunit B [Thermincola sp. JR]
 gi|296031102|gb|ADG81870.1| ATP-dependent nuclease subunit B [Thermincola potens JR]
          Length = 1154

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 86/767 (11%), Positives = 202/767 (26%), Gaps = 141/767 (18%)

Query: 267  TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
               +L     +    +N+  L+       RH +   G    ++L   V  + + +   ++
Sbjct: 271  PPVLLDAA--IPFRFQNSDSLAHLERCYFRHPTETAGAGEGIELAAAVNRRAEVEAVARK 328

Query: 327  ESWTSYFDSLPQESSASILARRIAYT--ISNMIGT-DTIFSNGKKRVIQAKDILVLVRKR 383
              +     +        +L     Y   I+++    D  F    KR +    ++ L+R  
Sbjct: 329  IVYLCREQNYRWRDIGILLRDLGPYRDLIADVFQDYDIPFFMDCKRNMLHHPLVELIRSA 388

Query: 384  KDT----PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
             +T         L R LK D  + V   D  +L +++    +    R+            
Sbjct: 389  VETVIKDWSYEPLFRCLKTDL-LPVSREDTDLLENYVLAHGIRGYARWAS---------- 437

Query: 440  MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA-QFC 498
                P     +  + +      E +     + +     +S      + + +  +IA    
Sbjct: 438  ---GPWHYLRQFTLGEDAEPAPEEKAELAAVNRGRLQVVSSLGLFTENLRQAGNIAEITA 494

Query: 499  SPHDFFT-----LILGAKKGRQQFISRFGNEVIDVLD------EFLNFTLRNEQNSYSSL 547
            + +          IL       +   R   +  + L          +  +        SL
Sbjct: 495  AVYTLLEDLHVPEILHKWAQEAESAGRL-EQAREHLQVWGGITSLFDEMVEAIGEESVSL 553

Query: 548  QELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            ++ ++ LE    +++        ++V + T+   +   +  +F++         +     
Sbjct: 554  EDYLAVLEAGLESLRLGLIPPGLDQVVVGTMDRTRSANTRALFILGANEGALPARQADDG 613

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                S              + R      ++    +    +   L+Y+ +TRAS++L +  
Sbjct: 614  IFNDSE-------------RERLAEAGVVLAAGGRRKAFDEQYLIYMALTRASEKLWLSF 660

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDER----VKKIKLTNSINKDEWIAYEWSTHHPENT 722
                   +          + + F         V K+    +   + +I  +         
Sbjct: 661  PLADEEGRALTPSPVIRRIKELFPGLNETFYQVDKLPDGTAGGLEYFIHPQRVLADLAVQ 720

Query: 723  PLEREETIKQLMDEQKIPKKLFSPI---------------------------KNDINEPY 755
              E +           +                                   +    +P 
Sbjct: 721  LRELKAGRAIDPVWWDVYNWFNGSADGRGRLAKVLRGVFHTNTEKRISPEVSRALYGQPL 780

Query: 756  ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
              + S I+                  E LL      + G   H  L  +F     +R   
Sbjct: 781  KASVSRIEKFKACPFAHFAGYGLRLKERLLFRLAAPDMGEFFHAAL-KLFNDRLAERGVD 839

Query: 805  ITSYCTKNAKLWPAKEYKNLLLSITR--LLENPMM--------------TTAMSCDSY-- 846
                  ++      +  + L   +    LL                      ++  +   
Sbjct: 840  WAQLSREDCGDLATQVVEELAPQLQSEILLSTARYRYLTGKLKRSVNRAAAVLAEHARRS 899

Query: 847  --SEVSVSGKINCPKK----------DIIIS--GRIDQIS----ISQQNIFIFEYKTHHH 888
                V V        +             +   GRID++          + + +YK+   
Sbjct: 900  IFRPVGVELSFGAGGELPPVTVELAGGGTLHLVGRIDRLDVARTEEADYLRVIDYKSS-D 958

Query: 889  VPQEIEHIPYTHIAQLSIY--------EKILKDSYPNKSLVCLLIYV 927
                +  I Y    QL  Y         +++    P      +L + 
Sbjct: 959  NRLSLAEIYYGLRLQLLTYLHVALTHSARLVGR--PGLP-GAVLYFT 1002


>gi|229195348|ref|ZP_04322119.1| UvrD/REP helicase [Bacillus cereus m1293]
 gi|228588122|gb|EEK46169.1| UvrD/REP helicase [Bacillus cereus m1293]
          Length = 776

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 87/265 (32%), Gaps = 42/265 (15%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
           K+   L++A   +                ++      + ++         +  +K     
Sbjct: 398 KQIDALEKAELKKPW---VEEEIELLSKDEYQKAYKYLQKKGEFDDNSFND-FEKEAKVL 453

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL------DFEDLIINTNDLLK 161
            ++  R     + K       +       Y++       +      D++D+   T ++L 
Sbjct: 454 GRMIVRKKLKPLRKGVQTLRFI--NFTGIYKQLFTDASWVTGEKPKDWDDICSLTVNMLD 511

Query: 162 K-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L          
Sbjct: 512 EGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF--------- 562

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 +  +GD  Q+I++ H +E         +     T+       I L  S+RST  
Sbjct: 563 --PAARMTVLGDFNQAIFA-HASETVNFNTLTSLYGPDETDG------INLTRSYRSTKP 613

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTT 294
           I+     +    +N      D    
Sbjct: 614 IIEFTRALVPEGKNIHAFERDGEKP 638


>gi|297560441|ref|YP_003679415.1| hypothetical protein Ndas_1478 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296844889|gb|ADH66909.1| conserved hypothetical protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 273

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 67/223 (30%), Gaps = 31/223 (13%)

Query: 753 EPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEH----- 799
            P  L+PS      +  L            + +    RG ++H  L+ ++ LP       
Sbjct: 6   LPSALSPSRASDFLQCPLLFRFRTIDRLPEAPSAAALRGTLVHACLERLYELPAESRNPR 65

Query: 800 --------KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSV 851
                   + K         +       E    L S   L+         +  +      
Sbjct: 66  NAVGLVEPQWKKLREKKPELDELFADDAERDTWLESARDLVR--RYFDLENPTALEPRDR 123

Query: 852 SGKINCPKK-DIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
             ++       + + G +D+I  +    I I +YKT        E        Q+  Y  
Sbjct: 124 EMRLEVSLPTGLRLRGYVDRIDATPSGQIRIVDYKTGKSPAPRFEDKA---RFQIFFYAV 180

Query: 910 ILKDSYPNKSLVCLLIYVSEP---KVFIIPQNKLNKAFAEIST 949
           ++            L+Y+      + +   +++L  A +EI+ 
Sbjct: 181 MIWRDLGVVPTRLQLVYLGGDGAVRWYDPTEDELRAAESEIAD 223


>gi|226950334|ref|YP_002805425.1| putative helicase [Clostridium botulinum A2 str. Kyoto]
 gi|226842263|gb|ACO84929.1| putative helicase [Clostridium botulinum A2 str. Kyoto]
          Length = 763

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 22/180 (12%)

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           +  H++IDE QD S ++  V++ L           S  R    VGD  QSIY + G    
Sbjct: 533 KFAHMVIDEAQDYSPLELYVLKLL-----------SKARGYTIVGDLGQSIYYYKG---- 577

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                    +K      ++   I+L  S+RST +I+   +KV    +N    ++      
Sbjct: 578 -----IENWEKLIKEVYEEGEYIQLKQSYRSTVEIVDFANKVLRKQKNNLEPAKAVLRHG 632

Query: 296 RH--RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
           +H  +     +    +     +   + + +         ++       +  L     + I
Sbjct: 633 KHPKKIQYKDEKDFYEKLNSAIETIEEKKDKTIAIICKDYEQCESLKESLHLKEEKQWEI 692


>gi|312221590|emb|CBY01530.1| predicted protein [Leptosphaeria maculans]
          Length = 1053

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 94/298 (31%), Gaps = 28/298 (9%)

Query: 2   KNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQC 61
           K R  +      +  ++            ++ +++        T  + +   ++A     
Sbjct: 22  KRRLSIVDGSHLKRFHQIPCARSSKLTYKLHPFLTQGAVRSITT--ESSAATKRAFIPSA 79

Query: 62  IEERFSLLSS---FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            ++    L       ++ +    K    + I    P+    +            R  +  
Sbjct: 80  EQQAIVELCRTQNVVVSARPGAGKTATAEAIVAADPNKPVVIITYSKRLQLDTARRLSAY 139

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLD-FEDLIINTNDLLKKRDVSAWIRYKIDQEI 177
               T     LA+   +            D F D ++ +  L  K ++ AW         
Sbjct: 140 PGSGTFTFHGLARKFFST-----------DVFNDALLRSLRL--KGNIPAWT----GDPY 182

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
             +++DE+QD +   + +I +                 +  +GDE+Q+IY F GA+ + +
Sbjct: 183 EIVILDELQDCTDDLFWLICAFISAVTQAAG--GKTPQIVVLGDERQAIYEFRGADARYL 240

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                     +      ++ + L  SFR +      V+ VF   E     S +    +
Sbjct: 241 SLSSAAMSSLSPY---PWTHLALSKSFRLSHQTCAFVNNVFLGGEQYIVGSHNGPKPL 295


>gi|168179338|ref|ZP_02614002.1| putative helicase [Clostridium botulinum NCTC 2916]
 gi|182669873|gb|EDT81849.1| putative helicase [Clostridium botulinum NCTC 2916]
          Length = 763

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 22/180 (12%)

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           +  H++IDE QD S ++  V++ L           S  R    VGD  QSIY + G    
Sbjct: 533 KFAHMVIDEAQDYSPLELYVLKLL-----------SKARGYTIVGDLGQSIYYYKG---- 577

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                    +K      ++   I+L  S+RST +I+   +KV    +N    ++      
Sbjct: 578 -----IENWEKLIKEVYEEGEYIQLKQSYRSTVEIVDFANKVLRKQKNNLEPAKAVLRHG 632

Query: 296 RH--RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
           +H  +     +    +     +   + + +         ++       +  L     + I
Sbjct: 633 KHPKKIQYKDEKDFYEKLNSAIETIEEKKDKTIAIICKDYEQCESLKESLHLKEEKQWEI 692


>gi|170757744|ref|YP_001782540.1| putative helicase [Clostridium botulinum B1 str. Okra]
 gi|169122956|gb|ACA46792.1| putative helicase [Clostridium botulinum B1 str. Okra]
          Length = 763

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 22/180 (12%)

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           +  H++IDE QD S ++  V++ L           S  R    VGD  QSIY + G    
Sbjct: 533 KFAHMVIDEAQDYSPLELYVLKLL-----------SKARGYTIVGDLGQSIYYYKG---- 577

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                    +K      ++   I L  S+RST +I+   +KV    +N    ++      
Sbjct: 578 -----IENWEKLIKEVYEEGEYIPLKQSYRSTVEIVDFANKVLRKQKNNLEPAKAVLRHG 632

Query: 296 RH--RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
           +H  +     +    +    V+   + + +         ++       +  L     + I
Sbjct: 633 KHPKKIQYKDEKDFYEKLNSVIETIEEKKDKTIAIICKDYEQCESLKESLHLKEEKQWEI 692


>gi|302845461|ref|XP_002954269.1| hypothetical protein VOLCADRAFT_118642 [Volvox carteri f.
           nagariensis]
 gi|300260474|gb|EFJ44693.1| hypothetical protein VOLCADRAFT_118642 [Volvox carteri f.
           nagariensis]
          Length = 1705

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 14/102 (13%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y+E  K +  +DF+DL+     LL +                H+L+DE QDT+L Q+
Sbjct: 622 LELYDERVKVSGCVDFDDLVGLAVALLLQGPARRAASRAFR----HVLVDEFQDTNLPQY 677

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
            +++ L           S    LF VGD  QSIY + GA P+
Sbjct: 678 RLVQLL----------RSEGSELFLVGDANQSIYMWRGALPE 709



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 56/223 (25%), Gaps = 38/223 (17%)

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            G   +            +       + + L  + RS   I+ V  ++ +          
Sbjct: 798 RGGTDRVATAPVAAEAATSGAGPGATASLVLRRNHRSLPHIVEVAQRIINQTHLTSPPPP 857

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
            S + +     +  Q    QL    V +      P          ++    +    A  +
Sbjct: 858 HSPSPLSTTKVQQQQQQQQQLHPLTVLEAVRTPRPGAAV------AVVTTGNGRQEAAWV 911

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I  ++        G  R ++ +D+ VL R  + +                       
Sbjct: 912 AAQIRKLVS-------GPGRSVRLQDVAVLYRLNRQSS---------------------- 942

Query: 410 FILTDHLAIKDLMALGRFILSQ--EDDLSFVCMLKSPLFNFSE 450
                   ++D+ A  R   +           +L  P      
Sbjct: 943 -PFWASEQVRDIAAFLRLAAAPLECSGGLLAQVLTRPRRGIDP 984


>gi|288905007|ref|YP_003430229.1| ATP-dependent deoxyribonuclease (subunit B) [Streptococcus
           gallolyticus UCN34]
 gi|288731733|emb|CBI13294.1| ATP-dependent deoxyribonuclease (subunit B) [Streptococcus
           gallolyticus UCN34]
          Length = 1080

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 82/732 (11%), Positives = 205/732 (28%), Gaps = 118/732 (16%)

Query: 264 FR---STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
           +R   ST ++                +      + +       ++  +   +   +  D 
Sbjct: 227 YRAAFSTGNVYQASLDFLRGLAAKFHVQPQYVESSQKSHEAFSKLSKLFEAKHDFTSSDV 286

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                 +   + +D + Q+     +A+ I + +               +  + KDILVL+
Sbjct: 287 TLTADDKKHYAIWDVINQKEEVEHVAKAIRHKL--------------YQGYRYKDILVLL 332

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
               D          + + Y I         ++DH  +  + +L R    +      V +
Sbjct: 333 ---GDVDSYRLQIGKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNL 389

Query: 441 LKSPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           LK+ L+  F ++D+          +   +         + K +  + +++ +        
Sbjct: 390 LKTGLYGNFKQEDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPL 449

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYS------------- 545
              F           ++ ++      + D L+  +     NEQ  +              
Sbjct: 450 LALFKAQKQRGSSLLEKLMTFLHAIHLPDNLEGMVATFSENEQEKHEQVWRTFTGILTQF 509

Query: 546 ---------SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGS 595
                    SL + +S +       +        + V + +    +   +  VF +    
Sbjct: 510 QTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNKFVFALGMTQ 569

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             F         I             I +S   N     + +   K        L     
Sbjct: 570 AHFPKIAQNSSLISDEE------RAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSAT 623

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
               ++L++      +  + +      ++         + +    T++ +   + A    
Sbjct: 624 ----EELVLSLPQIANEAEDTESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSR 679

Query: 716 THHPENTPLE--------------------REETIKQLMDEQKIPKKLFSP--------I 747
                   +E                    R++   + ++   I   + +          
Sbjct: 680 VIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAEGIELPLIKDNMQTKTVSADVIEA 739

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVI--- 793
           +   +EP  L+ S + T      +  L                 N G  +H++ +++   
Sbjct: 740 RFPSDEPISLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKD 799

Query: 794 -------FTLPEHKRKNFITS-----YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
                    L +  +   +       Y       +     +++  S   +L +       
Sbjct: 800 DSNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTATILRDDAQIQVE 859

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTH 900
           S     E +    I      + I G ID++   S  ++ I +YK+  +   +I+      
Sbjct: 860 SE----EETFELMIA---NSVRIRGIIDRVDRLSDGSLGIVDYKSSRNTF-DIQKFYNGL 911

Query: 901 IAQLSIYEKILK 912
             QL  Y + L+
Sbjct: 912 SPQLVTYVQALR 923


>gi|229173818|ref|ZP_04301358.1| hypothetical protein bcere0006_29160 [Bacillus cereus MM3]
 gi|228609668|gb|EEK66950.1| hypothetical protein bcere0006_29160 [Bacillus cereus MM3]
          Length = 519

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 75/554 (13%), Positives = 140/554 (25%), Gaps = 155/554 (27%)

Query: 134 NAHYEEAKK-KNCVLDFEDLIINTNDLLKKR-------------------DVSAWIRYKI 173
              YE+ KK K   +D          LLK+                    +        +
Sbjct: 96  YPKYEDLKKLKENRID-----KELFRLLKESLQEGLIFLEISGETALFILNEVPQCLIYL 150

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
                HI IDE QD   IQ E+   L     +G           AVGD  Q+IY+F    
Sbjct: 151 TARYTHIFIDEYQDCGEIQHEIFLRLVNKEIIG----------IAVGDLDQAIYAFSDRY 200

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            K +L                F+ +E+  + R    I     ++                
Sbjct: 201 SKYLLSLIGD---------DGFTHLEITRNHRCHKSISDYSLELMG-------------- 237

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                                           +  +        +         +I Y I
Sbjct: 238 -----------------------ITRDHIEEDKRVFKVNVRGTDE---------QIIYAI 265

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
            N +         K  + +  D  +L R        +                 D  +  
Sbjct: 266 ENNLNE----IKKKFNLSKNSDFAILCRGNGTARRASEFL------------TIDNKLFV 309

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
           D    K         ++      F  +L S     + +        ++  E +Y      
Sbjct: 310 DTPLDK---------INGNWASLFNDILNSYYLYKTNEITVLDFVSKYINEELY------ 354

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                 K   ++  I  L       +  +F +                       + + +
Sbjct: 355 -YKNFRKGLELVNKIFNLEDNQLEINLKEFIS-----------------------VAQLI 390

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
                  +     +  ++ ++ +    +     A  NE+ IMT+H +KGLE   VFL+D 
Sbjct: 391 -----YPEQEDVRITRMLKKILKNEEELYSFKPATENEINIMTLHKSKGLEFKCVFLMDL 445

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIP-----IWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
              +   +             +         I        N    +  +    + + ++ 
Sbjct: 446 YKWILPPEGNWVSEEDYIQALNLHYVGVTRAIEACYIMIGNKRYRERYQDSIIAHESDFL 505

Query: 649 RLLYVGMTRASDQL 662
            L      R+  +L
Sbjct: 506 YLNNTANLRSDIKL 519


>gi|323351322|ref|ZP_08086978.1| exonuclease RexB [Streptococcus sanguinis VMC66]
 gi|322122546|gb|EFX94257.1| exonuclease RexB [Streptococcus sanguinis VMC66]
          Length = 1093

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 63/667 (9%), Positives = 178/667 (26%), Gaps = 87/667 (13%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
             +  ++     + +   + +           +              +  KDI +L+   
Sbjct: 275 ESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDGVHYKDIRLLL--- 331

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            D        + + + Y+I         +  H  ++ + +L R           + +LK+
Sbjct: 332 GDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQLEDLLNLLKT 391

Query: 444 PLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            L+   +++++          +              S+ +  +  ++ +           
Sbjct: 392 GLYGDLTQEELDHFEQYLRFADIKGAAKLAKDFTANSQGKFDLDRLNHIRRRVMTPLQDF 451

Query: 503 FFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
           F +          +F          D L   L    + EQ  +  + +  S + +    +
Sbjct: 452 FKSRSQTTSGLLAKFTEFVQVARLSDNLTALLQGESQQEQERHEEVWKAFSHVLEQFAQV 511

Query: 562 KRAH-----------------------SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                                       A  + V++ +    + L +P V+ +    + F
Sbjct: 512 FADSKVKLDDFLALVLSGMLLSNYRTVPATVDVVKVQSYDLIEPLAAPYVYAIGLTQERF 571

Query: 599 SHKHIKKMHIMPSL----------NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
                 K  +                +  I       K+R   +S +    K+       
Sbjct: 572 PKIAQNKSLLSDEDRARLNDATDSQAELQIASSENLKKNRYTALSLMNSATKELVLSAPA 631

Query: 649 RLLYVGMTRASDQLIICKH-------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            +  V  + ++  L +                   +  ++  ++       +     + T
Sbjct: 632 LVNEVEDSMSTYLLELTAAPLSLPIIVKKPQASSDDIGSYRALLSQIIELHQEEIDREWT 691

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                   +A            +      K+L  E   P+ L +    +  +P  L+ S 
Sbjct: 692 AEEQTFWAVAVRVLRKKLAAEGISIPHISKELKTESLQPETLQALYPQE--QPLRLSASA 749

Query: 762 IDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSY 808
           ++   +              E         + G+ +H++ + +          +    + 
Sbjct: 750 LNEYFRHQYAYFLKYVLRLQEEWTIHPDARSHGIFLHRIFEKVLQDDSSADFDRRLAQAM 809

Query: 809 CT-----KNAKLWPAKEYKNLLLSIT--------RLLENPMMTTAMSCDSYSEVSVSGKI 855
                  +   ++           +         R+L +P     +  ++    + S   
Sbjct: 810 EETSREAEFESIYGESGQTRFARQLLLDTARATGRVLAHPSGIETIGEETGFGSA-SKPF 868

Query: 856 NCPKKD--IIISGRIDQISISQQNIF------IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                   + +SG++D+I      +       + +YK+        E       +QL  Y
Sbjct: 869 LTLGNGRAVTVSGKVDRI----DRLTKTESLGVVDYKSGDIKF-SFEKFFNGLNSQLPTY 923

Query: 908 EKILKDS 914
              +++ 
Sbjct: 924 LAAIEEL 930


>gi|240103687|ref|YP_002959996.1| ATP-dependent DNA helicase, putative, UvrD/REP family [Thermococcus
           gammatolerans EJ3]
 gi|239911241|gb|ACS34132.1| ATP-dependent DNA helicase, putative, UvrD/REP family [Thermococcus
           gammatolerans EJ3]
          Length = 551

 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 23/159 (14%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y   K++  + D+    ++          +     K   E   ++IDE QD S +QW
Sbjct: 165 IRDYVAWKEEKGIFDY----VSVLRYFLTTTPATLAPEKEGSEPRVMIIDEAQDFSPLQW 220

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            V++ L     +          + A GD  QSIYSF GA+P               N   
Sbjct: 221 AVVKRLRSIGLLDY--------VVAAGDPNQSIYSFQGADPS-----------EFENFMA 261

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
             +++ L  S+R    +    + +               
Sbjct: 262 SGTVVVLKRSYRLPKQVYNKAEMLTRWLRTHFEYEPREE 300


>gi|254414098|ref|ZP_05027866.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196179234|gb|EDX74230.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 568

 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             AK      EE       +D  D++       ++         ++   +  ILIDE QD
Sbjct: 190 QAAKDCLDRGEEEALFRNQIDTTDMVWIPWKC-QEIPFFKGAIARLKNRLKVILIDEAQD 248

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
              +Q  +++ L           SS   L AVGD  QS+Y F G     + +        
Sbjct: 249 VDNLQLSMLQLLIT---------SSQSFLIAVGDPNQSVYHFRGCLSDGLAKIMSRF--- 296

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
                    + E PL++R     L +V  +F    
Sbjct: 297 ------NCQVFESPLNYRCGQLHLQLVRDIFPHIP 325



 Score = 38.7 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 69/203 (33%), Gaps = 15/203 (7%)

Query: 418 IKDLMALGRFILSQEDDLSFVCMLKSP--LFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
           ++D+                + ++ S   L  F++  +  +   R  +  +   I+  A 
Sbjct: 317 VRDIFPHIPIQAHPNAPQGEIRIISSADLLKCFTDSTLTYLIVSRKNSTLIQSAIRIIAT 376

Query: 476 CGISKFQH--VIKYIHELIHIAQFCSPHDF-FTLILGAKKGRQQFISRFGNEVIDVLDEF 532
              +  +      Y+ + I        +   F   L     + +       +    L EF
Sbjct: 377 GKTATIKDEKAGDYLFKEIKRIAEKPYNPLTFEHKLDVYAAKTRHFLEQSPDAPTRLAEF 436

Query: 533 LNFTLR----NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            +F        +    ++LQ+  + + Q   + K         + ++++H+AKG E+ VV
Sbjct: 437 ADFIESIRTLYDTYKPATLQKWQTTINQIFNSRK------STSIHLLSIHSAKGAEAEVV 490

Query: 589 FLVDTGSQVFSHKHIKKMHIMPS 611
           FL+      F+H       +   
Sbjct: 491 FLLYPEEIPFTHSQQSLEELQQE 513


>gi|291527057|emb|CBK92643.1| ATP-dependent nuclease, subunit B [Eubacterium rectale M104/1]
          Length = 1156

 Score = 72.3 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 97/996 (9%), Positives = 251/996 (25%), Gaps = 216/996 (21%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
           K    +   S  +     F  L    LT      KN++ +++  +  D    + ++ +  
Sbjct: 57  KAIMNIDVLSFKRLAYRVFDELGITNLTVLEETGKNLVLRKLAAQEADKLGVIGRNLNRI 116

Query: 108 ------IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                   +      Y +    L     +  L+    +  K        D+++   +  +
Sbjct: 117 GYISEVKSLLSELVQYNISPEELGRYIASGRLSDTLSDKLK--------DVLVL-YEAFE 167

Query: 162 K-----RDVSAWIRYKIDQ--------EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           K        +  I   +            + I  DE    + IQ ++I+ L         
Sbjct: 168 KFMQDKYITAEEILNVLSNVAEESAILRNSVIAFDEFTGFTPIQNQLIKKLF-------- 219

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAE--PKRVLREKRINQKRATNAGQKFSI-IELPLSFR 265
             S    +    D ++ I+   G +       R  +   + A   G +    I L  ++R
Sbjct: 220 VISKKIYVTLTIDCREDIFKSRGMQELFDMPKRTVKSLTEMAAFYGIEVEEPIILDKNYR 279

Query: 266 STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQ 325
                         + EN +    +     + R S       + +      + +      
Sbjct: 280 --------------LAENEELSFMEQQFFRKRRCSFKKVPKHIHIDCLRDPKQEL----- 320

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
                                 +IA  I+ ++  +          ++ +DI ++     D
Sbjct: 321 ---------------------TKIARRINELVRNE---------NLRYRDIAIVT---GD 347

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
             +     R + + Y I    +    +  H  I+ + ++           +    L+   
Sbjct: 348 VNIYAGYVREIFDKYNIPYFIDATQEILFHPFIEFIRSIPDIAAQNFSADAVFRFLRCGF 407

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV--IKYIHELIHIAQFC--SPH 501
               + +I  +           +         + K +    I+ +++            +
Sbjct: 408 SELLDSEIDVLENYVLACGVRGKSAWDKKWVRLPKHKAGYDIELLNQSREYIMELLKPVY 467

Query: 502 DFFTL----------ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
             F+            +           +   +   +LD       +     Y  + +L 
Sbjct: 468 QVFSDKKSTVKDYVLAIYKLIVLLDIPDKLAKKEQALLDAGDQTASKEYGQIYKIVMQLF 527

Query: 552 SELEQYPPTIKRAHSA-------------------NHNEVRIMTVHTAKGLESPVVFLVD 592
            +                                  ++ V I  +   +     V+F   
Sbjct: 528 EKYVAVLGDECMDAEEFTQILDAGLDAADVAVIPPGYDTVTIGDIERTRLTNIKVMFFAG 587

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +      +            GI     +   +   +       +++  +     LY
Sbjct: 588 VNDGIVPKAAGR-----------GGIISQYEREALKELDIELAPGAREQAFIQ--RFYLY 634

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN------- 705
           + MT+ S +L I      S +K +       ++   F      +   +   ++       
Sbjct: 635 LNMTKPSRELYISYTRLDSEKKAAQPSYLIGILKGMFPELVVTETEDVEQLLDISSRQSA 694

Query: 706 ---------KDEWIAYEWSTHHPENTPLER-----------------EETIKQLMDEQKI 739
                     D W     +    + +  +                  E  I    +    
Sbjct: 695 LDYLLSNEVDDRWCEIAAAVMLYDASVSDAGDGNEVDDKEFTQKNSVERLINARFEHYSK 754

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHK 788
                +  ++        + +  +   +              E   S   + + G I H+
Sbjct: 755 DPISRNVARSIYGRHMEGSITRFEQFARCAYAHFLNYGLRLTEREESGFTSLDMGNIYHE 814

Query: 789 LLQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKN-----LLLSITRLLENPMMTTA 840
            L+              +   +   + A     +         +  +         M   
Sbjct: 815 ALERYSKKLDRESTDWFSVTDAKRDELAMEAINEVIDEYAGFGIFDTAESQHSISHMKAV 874

Query: 841 MSCDSYS---------------EVSVSGKINCPKK-DIIISGRIDQI--SISQQNIFI-- 880
                ++               E S    ++      + I GR+D+      +  +F+  
Sbjct: 875 FKQTVWALTTQIRRGSFVPERFEFSFYESLDMANDVTVDIKGRVDRTDTYTDEGRLFVKV 934

Query: 881 FEYKTHHHVPQEIEHIPYTH---IAQLSIYEKILKD 913
            +YK+       +  +   +     QL++Y   + +
Sbjct: 935 LDYKSG----NTVFDLVKLYYGTQLQLAVYMDAVME 966


>gi|293602041|ref|ZP_06684496.1| UvrD/REP helicase [Achromobacter piechaudii ATCC 43553]
 gi|292819571|gb|EFF78597.1| UvrD/REP helicase [Achromobacter piechaudii ATCC 43553]
          Length = 710

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 81/697 (11%), Positives = 173/697 (24%), Gaps = 146/697 (20%)

Query: 6   GLSLNESYE-LIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEE 64
           GL   +        +   +   +++D+    + +      T+ + AQ +    +    E 
Sbjct: 57  GLPPEDILALTFTDEARQVLQTRLTDVGIAYNTARRVNVQTVEEYAQRVLARIEDGKPES 116

Query: 65  R---FSLLSSFFLTQKFTPQKNIITQEINK------KSPDLKEKLKKSQDEFIKIRDRFN 115
                   +      +     N    E+              + L K +     +     
Sbjct: 117 LPSTREQQAYALYALENVATNNPQYAELLDIRTHNTAVSQFLDNLLKLKATMR-LAPDDE 175

Query: 116 TYKMFKSTLASLTLAKYLNA-HYE-EAKKKNCVLD---FEDLIINTNDLLKKRDVSAWIR 170
              +  +  A +T+  YL A  YE +       +D   F D   +   LL+       + 
Sbjct: 176 ADALTIAESAGVTITDYLWAVEYEKQRVDVFGYVDARGFFDATYDLARLLRSSSDPRDVL 235

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
                    +L DE+ D +   + +I +L          H        VGD+ Q IYS  
Sbjct: 236 T----PYKLVLCDELHDINEASFCIIEALL---------HVDVTYFVGVGDKDQVIYSHL 282

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA+       +   Q R   +    +   L +++R    +                    
Sbjct: 283 GAD-------ESFLQHRIRASFPDCANYPLTMTYRHGPHL------------------AY 317

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
           +    + +          ++ E   +     C  +                       +A
Sbjct: 318 AMEAFKQKPVDSNLPLRTEIHEATYADTPGACGAE-----------------------VA 354

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             +     +                  VL+R    +  I         +  ++       
Sbjct: 355 RALLQWKQSRKPLDQ----------CCVLLRDAHQSIEIENAL----MNAGVAYRTLTMK 400

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--RHETETVYE 468
                  I  L  +    L     ++     ++ +   +      +  Q  R    T+ +
Sbjct: 401 SYLLREEILFLRGMLAIALDDFHHVAAPATREAIVEALTTFAEVPLTPQELREAQSTLAK 460

Query: 469 YIQKFANCGISKFQHV---------IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                 +    + Q V          + +  L  +A     +     +       ++   
Sbjct: 461 EPSALKHFFSGQIQRVGSPAARTRISEAVSHLRELATDTPAYQALQTVCDLMD-MEKLAK 519

Query: 520 RFGNEVIDV--LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
           R      +   +   +   + + Q S  +L+E    +               N V+I  +
Sbjct: 520 RLYVHPYEASVVTRSVEGFIASAQASGKTLREFSEWI--GAAEAFVGARPGKNTVQIDCI 577

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
              KG E   V L    +  F                                       
Sbjct: 578 VNVKGKEFEHVILPFMDADAFPDP------------------------------------ 601

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                   E   L YV  TR   +L +    + +   
Sbjct: 602 ---LRHAREEENLFYVAATRTKSRLTLVSTEDAARRS 635


>gi|148380859|ref|YP_001255400.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
 gi|153931694|ref|YP_001385166.1| putative helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153937610|ref|YP_001388635.1| putative helicase [Clostridium botulinum A str. Hall]
 gi|148290343|emb|CAL84468.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152927738|gb|ABS33238.1| putative helicase [Clostridium botulinum A str. ATCC 19397]
 gi|152933524|gb|ABS39023.1| putative helicase [Clostridium botulinum A str. Hall]
          Length = 763

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 102/314 (32%), Gaps = 38/314 (12%)

Query: 46  ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105
                  +++       EE  + +   +       + N   +   +    L + +++   
Sbjct: 411 DKDYILKIREVRAKYEGEEERTNIIKLY-----EERDNKKEKIKLEAEEVLNKTIREWLI 465

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK----NCVLDFEDLIINTNDLLK 161
           + +    R           A+  +   +  +Y + K +    N  +D EDL       +K
Sbjct: 466 DDVVDVYRDMYIDEENLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIK 525

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
              V  +       +  H++IDE QD S ++  V++ L           S  R    VGD
Sbjct: 526 IDGVDNY-------KFAHMVIDEAQDYSPLELYVLKLL-----------SKARGYTIVGD 567

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             QSIY + G             +K      ++   I L  S+RST +I+   +KV    
Sbjct: 568 LGQSIYYYKG---------IENWEKLIKEVYEEGEYIPLKQSYRSTVEIVDFANKVLRKQ 618

Query: 282 ENAQGLSEDSTTTIRH--RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
           +N    ++      +H  +     +    +     +   + + +         ++     
Sbjct: 619 KNNLEPAKAVLRHGKHPKKIQYKDEKDFYEKLNSAIETIEEKKDKTIAIICKDYEQCESL 678

Query: 340 SSASILARRIAYTI 353
             +  L     + I
Sbjct: 679 KESLHLKEEKQWEI 692


>gi|303240431|ref|ZP_07326948.1| ATP-dependent DNA helicase, RecQ family [Acetivibrio cellulolyticus
            CD2]
 gi|302591996|gb|EFL61727.1| ATP-dependent DNA helicase, RecQ family [Acetivibrio cellulolyticus
            CD2]
          Length = 1602

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 25/142 (17%)

Query: 151  DLIINTNDLLKKRDVSAWIRYKIDQ------EIN--HILIDEVQDTSLIQWEVIRSLTED 202
            DL+     L K  +V      +I         I    ++IDE QD    ++ +I  L E 
Sbjct: 1136 DLLGRVGTLEKTDEVIKEAIRRIQSGEVEAGRITKMVLVIDEAQDMDADEFALINELVE- 1194

Query: 203  FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    +    + AVGD+ Q+IY F GA  K +    +          Q   + EL  
Sbjct: 1195 -------QNEDMRVIAVGDDDQNIYEFRGASSKYLEHMIK---------VQNAVMYELIE 1238

Query: 263  SFRSTADILTVVDKVFSIPENA 284
            ++RS ++++   ++      + 
Sbjct: 1239 NYRSKSNLVDFTNQFVKKISHR 1260


>gi|224499010|ref|ZP_03667359.1| hypothetical protein LmonF1_04633 [Listeria monocytogenes Finland
            1988]
          Length = 1157

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 93/748 (12%), Positives = 195/748 (26%), Gaps = 169/748 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       IA  I  +               + +DI +L R   D  ++        
Sbjct: 307  QANNRRAEIEGIAREIRQLALNG----------YRYRDIAILTRNLGDYDVLCETVMEA- 355

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I    + +  +  H  I+ + +    IL + + +  F  +     F+ +E      
Sbjct: 356  --YNIPTFIDKKRAMAKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNR 413

Query: 453  --------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIKY---IHELIHIA 495
                          I        E + +Y  I+  +   + +    I     I+E+ ++ 
Sbjct: 414  RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLI 473

Query: 496  QF-CSPHDF--------FTLILGAKKGRQQF--------------------ISRFGNEVI 526
                S  +             L      +Q                     ++R   +  
Sbjct: 474  VNPLSTLELNLRKAKTGMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAW 533

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              +   L+  +         L      +              + ++V +  +  AK L+ 
Sbjct: 534  SSISALLDEFVEVLGEETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDM 593

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V+F +     V   +   K        D         +  ++NNI              
Sbjct: 594  KVIFAIGMNDGVMPLRQKDKGIFSDQDRDALRAEDSKLKPSAKNNIG------------- 640

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E + L Y  ++  SD+L +   +     K  ++  +   +   F+       +   + ++
Sbjct: 641  EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFNELNESVYLTDPSLLS 700

Query: 706  KDE-------------------------------WIAYEWSTHHPENTPLEREETIKQLM 734
              E                               W     S    E   +  ++ +  L 
Sbjct: 701  DAEQSSYIRSKQATLGLLTSQLQMYKRGYTLSSVWWDAYNSYFENEKESIMAKQVLSSLY 760

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
             E K      +  KN   E    + S ++                  E      Q  + G
Sbjct: 761  YENKTKPLQETTAKNLFGETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQLQAVDMG 820

Query: 784  LIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
             I H  ++ I    +       N     C + AKL        +   I   L +  M   
Sbjct: 821  EIFHGAMEWISAELKRNNLDWGNLTEEECKQMAKLAMTFLAPKIQHEIL--LSSKRMEYI 878

Query: 841  M------------------SCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
                                  ++  V +                     ++++ GRID+
Sbjct: 879  QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDR 938

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL 923
            I  +       + I +YK+  H    +  + Y    Q+  Y  I+         K+    
Sbjct: 939  IDMAEQDDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPA 997

Query: 924  --LIYVSEPKVF----IIPQNKLNKAFA 945
              L +    +       +    + K   
Sbjct: 998  GVLYFHMHNQYVQAEKELSDEAIAKELQ 1025


>gi|118371574|ref|XP_001018986.1| hypothetical protein TTHERM_00583460 [Tetrahymena thermophila]
 gi|89300753|gb|EAR98741.1| hypothetical protein TTHERM_00583460 [Tetrahymena thermophila
           SB210]
          Length = 3006

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 26/190 (13%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE  K +    DF D++              +   K  Q +++I++DEVQD   +
Sbjct: 777 EIYQEYERWKDQEGSYDFMDIVNYVIR------SINYGFNKNIQYLHYIMVDEVQD---L 827

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR-----INQK 246
              ++  L +    G         +F  GD  Q+I    G     +              
Sbjct: 828 PMNILYLLKKMTTNG---------IFYSGDTAQTIAQGVGFRYGSLKSLFDNKSVGQYYT 878

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
            + +     +I +L ++FRS   IL + + V  + E       ++   ++   S I    
Sbjct: 879 DSKSITDDVTIQQLTVNFRSHNKILYLANSVIDLLE---FFFPETIDRLKKEKSSIDGPK 935

Query: 307 TVQLWEQVVS 316
            + L E    
Sbjct: 936 PIILGESDPD 945


>gi|237803333|ref|ZP_04590918.1| UvrD/REP helicase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025314|gb|EGI05370.1| UvrD/REP helicase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 511

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 114/355 (32%), Gaps = 41/355 (11%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
           +F +++D +  + +   + + + L+      YE    ++    F  L   T    K  + 
Sbjct: 78  QFSQLKDEYKAH-LPDLSKSDINLSTDDYDFYESEFMEHYRQGFVLLEAVTIIACKVLEK 136

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
           S   R  I  +   + IDE QDTS  Q  +  +L          HS      AVGD +QS
Sbjct: 137 SEACRRYIKSKYRSVYIDEYQDTSEPQHALFCTL----------HSLGLKAVAVGDTQQS 186

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           I++F G++P+ +L                F    + ++ R    I+    +++S      
Sbjct: 187 IFAFRGSDPRHLLALVAD--------AVNFEHHIIDINHRCHPSIINYSKRIYSSQCQLI 238

Query: 286 GLSEDSTTTIR------HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
            ++ +              +   G    ++   + +   D         W    D L  +
Sbjct: 239 PVAANDIRVYHRSFDGTQEAVASGLNNWIEKSVRALKMEDLSEVAVLVRWNGSIDRL--Q 296

Query: 340 SSASILARRIAY----TISNMIGT------DTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
              ++ AR         I++ +           F   K       D L+  R       +
Sbjct: 297 RHLTLPARFYRDDSLSKIASPLSRFFSVLLTFYFDERKLAQQILNDFLLTKRTPAGLRDL 356

Query: 390 TFLTRFL----KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
                 L     N      +   +          +  AL + I S ED L +  +
Sbjct: 357 RKSIHDLRNFELNRLPDEFIKIAKLFNFSAANKTEADALLQTISSSEDILHYKAV 411



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 82/318 (25%), Gaps = 76/318 (23%)

Query: 370 VIQAKDILVLVRKRKDTP---------LITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
            + A DI V  R    T           I    R LK +    V    R           
Sbjct: 239 PVAANDIRVYHRSFDGTQEAVASGLNNWIEKSVRALKMEDLSEVAVLVR-------WNGS 291

Query: 421 LMALGRFILSQEDDLSFVCM--LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           +  L R +           +  + SPL  F    +        +                
Sbjct: 292 IDRLQRHLTLPARFYRDDSLSKIASPLSRF-FSVLLTFYFDERKLAQQILNDFLLTKRTP 350

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
           +  + + K IH+L +      P +F            +  +       +  D  L     
Sbjct: 351 AGLRDLRKSIHDLRNFELNRLPDEFIK--------IAKLFNFSAANKTEA-DALLQTISS 401

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                                 I    +    E+++MT+H +KGLE  +V  +D    VF
Sbjct: 402 -------------------SEDILHYKAVQPGEIQVMTLHKSKGLEFDLVIHLDLYDWVF 442

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                                             +        +  ++   L +VG+TRA
Sbjct: 443 P-----------------------------TRTYTGNFNEEVFTDWDQDLNLHFVGITRA 473

Query: 659 SDQLIICKHSNTSNEKKS 676
               ++   +   N + +
Sbjct: 474 KKWCVLMTSTQRINSEDN 491


>gi|312194627|ref|YP_004014688.1| hypothetical protein FraEuI1c_0740 [Frankia sp. EuI1c]
 gi|311225963|gb|ADP78818.1| Protein of unknown function DUF2800 [Frankia sp. EuI1c]
          Length = 288

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/189 (10%), Positives = 58/189 (30%), Gaps = 12/189 (6%)

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA----KLWPAKEYK 822
                         + G   H  L++ +  P  +R     +   ++          ++  
Sbjct: 37  DRPAPPKGPPWAHTSLGTSAHNALRLWWDEPARRRTPERAAALVRSGWVAEGWRDDQQSA 96

Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
           +    +  +      T  +        +V  ++      + + GR+D++      + + +
Sbjct: 97  DARDRVAAM--CERYTAGLDPTDE-PRAVERQVATRTDLLALHGRVDRLDERDGELVVVD 153

Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
           YKT    PQ+ +         L++Y    +     +     L ++   ++        ++
Sbjct: 154 YKTGRRAPQDGDARTS---PALALYAFAAERMLRQRCRRVELHHLPSGRIVE--AEHTDE 208

Query: 943 AFAEISTKI 951
           + A    + 
Sbjct: 209 SLARHLRRA 217


>gi|237785507|ref|YP_002906212.1| putative RecB family exonuclease [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758419|gb|ACR17669.1| putative RecB family exonuclease [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 270

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 59/201 (29%), Gaps = 29/201 (14%)

Query: 750 DINEPYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                  L+PS      +  L                   +G ++H +L+ ++  P  +R
Sbjct: 2   SARRRMALSPSRAGDYRQCPLLYRYRAIDRLPEPKTIAQVKGTLVHAVLENMYGQPRPER 61

Query: 802 K-NFITSYCTKNAKLW--PAKEYKNLL--LSITRLLEN--PMMTTAMS-------CDSYS 847
                T        L      + + L+    +   L     ++    +            
Sbjct: 62  TYPKATKMLKPQWALMVEKDPDLRELVPEDKLLPFLVECRSLLKGYFAMENPENFDADEC 121

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           E+ V   +      + + G ID++ ++    I + +YKT               + Q+  
Sbjct: 122 EMLVDTTLP---NGVPVRGFIDRVDVAPTGEIRVVDYKTGKKPIPRFSQQA---VFQMRF 175

Query: 907 YEKILKDSYPNKSLVCLLIYV 927
           Y  +    +        L+Y+
Sbjct: 176 YALVYWRLFNIIPTQLRLMYL 196


>gi|24379892|ref|NP_721847.1| putative exonuclease RexB [Streptococcus mutans UA159]
 gi|81451162|sp|Q8DT75|ADDB_STRMU RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|24377869|gb|AAN59153.1|AE014982_2 putative exonuclease RexB [Streptococcus mutans UA159]
          Length = 1080

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 75/649 (11%), Positives = 172/649 (26%), Gaps = 109/649 (16%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  +A +I   +              + KDILVL+    D          + + Y+
Sbjct: 304 QKEEVEHVAKSIRRKLYEGH----------RYKDILVLL---GDADAYKLQIGKIFDKYE 350

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQ- 459
           I         ++ H  +  + +L R           + +LKS L+    ++ + K+    
Sbjct: 351 IPYYFGKAESMSSHPLVHFVDSLERVKRYNFRAEDVMNLLKSGLYGKIRQNQLDKLEQYV 410

Query: 460 -----------------RHETETVYEYIQKFANCGISKFQHVIKYIHE-----LIHIAQF 497
                             +  +   + + K     +S  Q +IK   +     L  +  F
Sbjct: 411 IYADIKGKTKFFKDFTLDNHGQFDLKALNKLRAEVMSPLQELIKIQAQKGDSILQKLTNF 470

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                         +G          +V       L             L + ++ L   
Sbjct: 471 LEAISLTNNFSKLIQGVSDTEQEKNEQVWKTFTVILEQFHTIFGQEKMKLADFLALLRSG 530

Query: 558 PPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V + +    +   +  VF +      F      K  I        
Sbjct: 531 MLAADYRTVPASVDVVTVKSYDLVEPHSNKFVFALGMTQSHFPKIVQNKSLISDEERAKI 590

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                  +          + K   K        L          +L++      +  + +
Sbjct: 591 NEATPDNRR------FDIVTKENLKKNHFTALSLFNAAT----QELVLTLPQILNEAEDN 640

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                 ++        E+       +  +   + A          + +++E + ++    
Sbjct: 641 TSSYLLELQDMGVPVVEKGGNRLAADPEDIGNYKALLSRVIELNRSAIDQELSKEEQTFW 700

Query: 737 QKIPKKLFS--------------------------PIKNDINEPYILNPSTIDTKGKTNL 770
               + L                              +  I++P  L+ S + T      
Sbjct: 701 SVAVRYLRQKLAKEGLTIPEVNDKMQTKQVAAEVMAARFPIDQPLNLSSSALTTFYNNQY 760

Query: 771 ESLLS-----------DNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKN 812
              L                 N G  +H++ +++           +  R   IT++    
Sbjct: 761 LYFLQYILGLQELETIHPDARNHGTYLHRVFELVMQDQSTDDFDSKLNRAIDITNHEDSF 820

Query: 813 AKLWPAKE--------YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
             ++   E         +++  S   +L+        +     E +    ++   K   I
Sbjct: 821 HLVYNEDEESRYALGILEDIARSTATVLKGDN--PVQAESE--EEAFELMLDQAVK---I 873

Query: 865 SGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
            G ID+I   S  ++ I +YK+  +   +++        QL  Y + L+
Sbjct: 874 RGVIDRIDRLSDGSLGIVDYKSSKNTF-DLQKFYNGLSPQLVTYIEALR 921


>gi|238796706|ref|ZP_04640212.1| Superfamily I DNA and RNA helicase [Yersinia mollaretii ATCC 43969]
 gi|238719437|gb|EEQ11247.1| Superfamily I DNA and RNA helicase [Yersinia mollaretii ATCC 43969]
          Length = 542

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 20/131 (15%)

Query: 154 INTNDLLKKRDVSAWI--RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           +    +L    V   +  +  +      + IDE QD+   Q ++ + L E          
Sbjct: 153 LEAVGMLAHYVVGRSLACQKYLVARYRAVYIDEYQDSGYFQHQLFQKLKELGLTA----- 207

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
                 AVGD  QSIY+F    PK +L          T  G  F    +  +FR    I 
Sbjct: 208 -----VAVGDNDQSIYAFAQKSPKHLLAL--------TAQGSGFEHFSITTNFRCHPSIN 254

Query: 272 TVVDKVFSIPE 282
               ++ +   
Sbjct: 255 DFALRLLNPNH 265


>gi|196047656|ref|ZP_03114862.1| ATP-dependent DNA helicase [Bacillus cereus 03BB108]
 gi|196021525|gb|EDX60226.1| ATP-dependent DNA helicase [Bacillus cereus 03BB108]
          Length = 263

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 15/159 (9%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ-----------KFTPQKNIITQE 88
           +     I  +   L   +             S FL                  K I+ ++
Sbjct: 105 QKAAEEIRNRVANLPGMNHAASSYVVAGTFHSVFLKLLRSQGYNQQILANEKHKQIMIKK 164

Query: 89  INKKSPDLKEKLKKSQDEFIKIRD-RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I K+     +   ++    I +   + N  K  K+        K +   +EE K++   +
Sbjct: 165 ILKELRLKDDYDAETMLAMISLEKNKLNRPKDVKAKTPVEQEFKEVYERFEEVKQRYNYI 224

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           DF+D+++ T  +L+     A +  ++ Q  ++I +DE Q
Sbjct: 225 DFDDILLETYYMLENN---APLLTQLQQRFHYIEVDEFQ 260


>gi|213965620|ref|ZP_03393814.1| RecB family exonuclease [Corynebacterium amycolatum SK46]
 gi|213951779|gb|EEB63167.1| RecB family exonuclease [Corynebacterium amycolatum SK46]
          Length = 292

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 74/228 (32%), Gaps = 41/228 (17%)

Query: 756 ILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPEHKR------ 801
            L+PS  +   +  L+                  +G ++H +L+ +   P  +R      
Sbjct: 2   ALSPSRANDYRQCPLKYRFRAIDKIPEPSTVAQVKGTLVHAVLEQMHAWPREERTYPAAV 61

Query: 802 ------KNFITSYCTKNAKLWPAKEYKNLLLSITRLL------ENPMMTTAMSCDSYSEV 849
                    + +   +  +L P  +Y + L+    LL      ENPM           E 
Sbjct: 62  KRLKPTWEDMRAKDEELIELVPEDDYYDFLVECRGLLKGYFMMENPMG---FDAAEM-EK 117

Query: 850 SVSGKINCPKKDII-----ISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            V   I+      +     + G ID++ I+    + I +YKT        +      + Q
Sbjct: 118 FVQLVIDPDADQTVPLSVPLRGFIDRVDIAPTGEVRIVDYKTGKKPSPRFQDEA---LFQ 174

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ--NKLNKAFAEIST 949
           +  Y  +             L+Y+      ++     +L    AEI+ 
Sbjct: 175 MRFYALVWWRLTGRIPEQLRLMYLKVADDLVLSPNATELEAFQAEIAD 222


>gi|163754617|ref|ZP_02161739.1| hypothetical protein KAOT1_17018 [Kordia algicida OT-1]
 gi|161325558|gb|EDP96885.1| hypothetical protein KAOT1_17018 [Kordia algicida OT-1]
          Length = 921

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/536 (10%), Positives = 137/536 (25%), Gaps = 92/536 (17%)

Query: 429 LSQEDDLSFVCMLK----SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
             + D   +  ++     + L    + +   +     E       I       +++F   
Sbjct: 352 HHRNDTFYYKNIINVLSDTNLRPLFQQEDKNLAADIIEYIQTNNIIYVSTEVIVARFPKH 411

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ--- 541
           ++ I E++       P       +      ++  ++   +    L     +  R  +   
Sbjct: 412 VQDIAEMLFTYWNDKPKLAIQNCVT---LIRRLKTKLIEDREQHLLAL-EYLYRFNEVFN 467

Query: 542 ------------NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                           SL  L  E+                 +++M +   + L+   V 
Sbjct: 468 QLQHLTKQHNYITDIKSLLALYKEI--ISTETLDFKGEPLQGLQLMGMLETRVLDFKTVI 525

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L      +          I   L     +P                 K         + R
Sbjct: 526 LSSVNEGILPSGKSNNSFIPFDLKKQFNLP---------------TYKEKDAIYTYHFYR 570

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           LL+       + + +  ++         +  +   +      +  + +  +  ++ K   
Sbjct: 571 LLHRA-----ENVYLLYNTEADGLNGGERSRFLMQLETYNMPNHTLTQNVVIPTVPKITH 625

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                          E ++        + I  K FSP          ++       G   
Sbjct: 626 QMQ------------EVQKEASMQKRMKDIANKGFSPSALTSYIRNPIDFYYQKILGINE 673

Query: 770 LESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCTKNAKLWPAKEYK----- 822
            E++         G ++H  L+++      +      I +       L      K     
Sbjct: 674 YEAVEETVAANTLGTVVHDTLELLYKPFEGKIIATEDIKAMFKNVEPLVVENFKKTYGEG 733

Query: 823 ------------NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK------DIII 864
                            +T  L+   + T  S  +   + +   +            + I
Sbjct: 734 NIHRGKNLIIFNVAKRYVTNFLQQE-LQTLKSGKTLRILQIEQTLKAKVDIPELDFPVYI 792

Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIE-----HIPYTHI----AQLSIYEKIL 911
            G++D++      + I +YKT      ++E      +   +      Q+  Y  ++
Sbjct: 793 GGKVDRVDELDGVMRIIDYKTGKVSQGDVEIVDWDLLTQDYKFSKSFQVLAYAYMI 848


>gi|308173039|ref|YP_003919744.1| ATP-dependent deoxyribonuclease subunit B [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605903|emb|CBI42274.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus
           amyloliquefaciens DSM 7]
          Length = 1166

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 74/752 (9%), Positives = 202/752 (26%), Gaps = 156/752 (20%)

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           + A+ L+ D +    H + R      V     + SQ+D +           F  +  ++ 
Sbjct: 264 QTAKELNADISCKELHGTKRHQH---VPELACIESQYDVRPAAVYTGGQEAFTVIQAQNR 320

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            + L   IA  I +++           R  + +D+ +L+R          L + +  DY 
Sbjct: 321 RAEL-EGIAREIQSLVRD---------RGYRYRDMAILIR---QPEDYKDLLKEVFADYG 367

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-FNFSE---------D 451
           +    + +  +  H  I+ + +    +       +     K+ L F   +         D
Sbjct: 368 LPYFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIREQVD 427

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQH-------------------------VIK 486
            +   C         +   ++F                                   +I+
Sbjct: 428 QLENYCIAYGIKGERWTNGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETREWMAEPLIR 487

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQF--------------ISRFGNEVIDVLDEF 532
             + L       S  +   L L       +                ++   +  D + + 
Sbjct: 488 LQNRLKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQQAEEAGNMVEAQQHGQAWDAVIQL 547

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
           L            SL      LE    ++  +      ++V +  +  ++   +   F++
Sbjct: 548 LEEFAGMMGEDEMSLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSCTFVI 607

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                V   +  +   +     +          S               +    + + L+
Sbjct: 608 GANDGVLPARPDENGVLSDDDREWLKAVGVELSS-------------AGRERLLDEHFLI 654

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           Y+ ++  SD+L +      +  K        + + + F + +          ++++E + 
Sbjct: 655 YMALSSPSDRLYVTYPIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEEEQLQ 714

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY---------------- 755
           Y  +    +     +     +  +   +    ++ +  + +                   
Sbjct: 715 YLVNKQVAQTYTASQLRLWTREYEISDVWWSAYNVLMKEPDHERAKKLFSSLFFRNEAKR 774

Query: 756 --------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLL 790
                           + S ++                  E      +  + G + H  L
Sbjct: 775 LDRPVSRQLYGEHIKGSVSRMEAFNACQFSHFASHGLQLKERQFFKLEAPDIGQLFHSSL 834

Query: 791 QVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSIT-----RLLENPMMTT--- 839
           ++I         + ++     C   +     +    L   I             +     
Sbjct: 835 KLISDRLREQKLEWRDLTKDQCRNFSYDAVERLAPRLQKEILLSSNRHFYVKEKLQKIVT 894

Query: 840 ----AMSCDSYSE--VSVSGKINCPKKDII--------------ISGRIDQISISQQN-- 877
                +S  + +   V +  ++       +              + GRID++  ++ +  
Sbjct: 895 RVSGILSEHAKASGFVPIGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKG 954

Query: 878 --IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
             + I +YK+      ++  + Y    Q+  Y
Sbjct: 955 LLLRIVDYKSS-DKGLDLAEVYYGLALQMLTY 985


>gi|254520363|ref|ZP_05132419.1| ATP-dependent nuclease subunit AddB [Clostridium sp. 7_2_43FAA]
 gi|226914112|gb|EEH99313.1| ATP-dependent nuclease subunit AddB [Clostridium sp. 7_2_43FAA]
          Length = 1145

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 97/903 (10%), Positives = 236/903 (26%), Gaps = 203/903 (22%)

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKID--QEIN--HILIDEVQDTSLIQWEVIRSLTEDFF 204
           F +++      +   D   ++  ++      +   I IDE    +  Q EVI+ L +   
Sbjct: 168 FNEILHK--RFIDSDDELTFLAKRLKDCNIYDDAEIWIDEFTTFTPQQLEVIKVLAKKA- 224

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +    D         G++                      + I      
Sbjct: 225 -------KVVNITLCSD-----SLSGGSDI--------DYTDIFDAIKNTENSIL----- 259

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
                      ++      +     D      +R      +  ++         + +   
Sbjct: 260 -----------RIMKEGNISYLEPIDLNKGQSYRFLNNEDLQHLERHFFTYPFKEYKGKA 308

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                    +S  +          +A  I  M+              + KDI V+ R   
Sbjct: 309 NNVRIYKANNSYDE-------VEVVAKDILRMVRD---------NGYRFKDIAVVCRNID 352

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
           +   I+ +     N+Y I    + +  + ++  +  +++    + S     S    LKS 
Sbjct: 353 EYEKISTVI---FNEYNIPFFIDKKREILNNPLVVVIISSLEILASNWSYESVFKYLKSG 409

Query: 445 LFNFSED---------------------DIFKICTQRHETETVYEYIQKF---------A 474
           L N   D                     D++       E  T+ E +++           
Sbjct: 410 LVNVERDYIDILENYILANGIKGYKWTKDLYDKENISEEENTIIEIMEEIRSPLMKLHNR 469

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
             G +K +     ++E ++        + +     +   + +       +V +++ E L+
Sbjct: 470 IKGKNKVRDFATNLYEFLNELNVFKTLEVWLEEFNSLGLQDKIKEYI--QVPEMVIEILD 527

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDT 593
             +    +    ++E    L       +        ++V I  +   KG E   ++L+  
Sbjct: 528 QVVEVLGDEVLDIKEFTKILISGFEEREIGVIPMSLDQVNIGDISRVKGREVKALYLIGV 587

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
              V    + ++  I     +          S ++                 E   ++Y 
Sbjct: 588 NDGVLPAANKEEGIISDRERELLRNIGIRLASDTKIRAF-------------EEQFIVYT 634

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI--------------- 698
            +T  S+ L++         K          +     N     +I               
Sbjct: 635 ALTIPSEYLMVTFPMADFEGKSLRPSIIIPRLKKVLPNVVEESEIYNIRDRRDKFNKITA 694

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE-----------------QKIPK 741
                      +  E+   + +    +  +  +   +                  +KIP+
Sbjct: 695 PTPTFNELISALRMEFEKENVDEYWAQAFKWFENNEEFKNKSNRMFKGLTYTNLVEKIPR 754

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLL 790
           +    +    N+  I N S I+   +              +  + +    + G  +H +L
Sbjct: 755 EKIKRLYQSENKKLIFNVSRIEKYAQCPFSYYVQYGLKAKDRKVYEFSAPDLGSFMHNVL 814

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS--- 847
                   +++  +      +   +      K L      +L +       +        
Sbjct: 815 DDFTNTVRNEKIAWSDLNRERCKVIVNELVDKRLESDSNSILNSTKKYKYFADRFKRTIT 874

Query: 848 ---------------EV--------------SVSGKINCPKKDIIISGRIDQ---ISISQ 875
                          EV               +   +    + + + GR+D+   + +  
Sbjct: 875 KSVMVISEQMRKGKFEVFKNEFAFGGFSDGEPIKIDLP-SNETVYLVGRVDRIDTLDLDG 933

Query: 876 QNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---------KDSYPNKSLVCLLI 925
                I +YK+       +  + Y    QL +Y   L         K + P       ++
Sbjct: 934 NTYIKIVDYKSGAKKF-NLTEVYYGLQIQLLVYLDALIKNSKYILQKQAMPG-----AIL 987

Query: 926 YVS 928
           Y  
Sbjct: 988 YFR 990


>gi|229091818|ref|ZP_04223016.1| UvrD/Rep helicase [Bacillus cereus Rock3-42]
 gi|228691546|gb|EEL45301.1| UvrD/Rep helicase [Bacillus cereus Rock3-42]
          Length = 689

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 61/184 (33%), Gaps = 22/184 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
                                Q+    EL  S+RST +I+   +++    E   GL+   
Sbjct: 507 ---------IEDWSA-FKEVLQETGYYELTRSYRSTKEIIEFANEIIKNAEIPVGLAMPV 556

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
             +         +    ++ + +    ++          +  D           A     
Sbjct: 557 FRSGEEVKVIHTEDQFTEILKTLKQLQNADVKTIAVIGRT-DDECRDMYEKLTNAGLTVN 615

Query: 352 TISN 355
            I  
Sbjct: 616 VIEA 619


>gi|330891796|gb|EGH24457.1| UvrD/REP helicase [Pseudomonas syringae pv. mori str. 301020]
          Length = 570

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/495 (13%), Positives = 142/495 (28%), Gaps = 83/495 (16%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK----NCVLDFEDLIINTNDLLKKRDV 165
           + +     ++     A+  LA    A +E  K++       L F+      ++LL + D 
Sbjct: 100 LLNGRPNLQLLPPPEAAAHLADIDKAQHENEKRRLFEQEGRLHFDLFASLASELLSRSDR 159

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            + I          I++DE QDT+  +W +I+ L                L A+ D +Q 
Sbjct: 160 LSAI---FSDTYPIIILDEFQDTNSDEWALIQQL-----------GKGSRLIALADPEQR 205

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA--------DILTVVDKV 277
           IY F GA+P+RV            +            + RS+         D+LT  +K 
Sbjct: 206 IYEFRGADPRRVGDFLENFGAAYFDFAG--------ENHRSSGTDITAYGNDLLTGANKG 257

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            +  +      +       H +++      +   ++V  +  +   P +     + D L 
Sbjct: 258 KAYQQVKITRYDFMYGKSLHFTAKAAVFSALDRLKKVPDKSIAILVPSRRLMLEFSDYLS 317

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
             +                     +  + +   + A  I  L+     + + + +   L 
Sbjct: 318 SAADGLPALNH------------DVAMDAEPPALAAGVIATLLAGGTASDVASRMLGALH 365

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
           +  +       R          DL       LS         +L                
Sbjct: 366 SHIR-----GRRGGRPTPQTELDLAGALSGFLSSGKIRGSKRLL---------------I 405

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
               +  +      +        + H+   +          S  +    +    +  +  
Sbjct: 406 VSEVQRISELRRQLQLTGDPAEDWLHLRGLLA--------SSTAEALKQVATDARYLRLL 457

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
               G+ +   L               +    L+            A   +   + +MT+
Sbjct: 458 --HRGSVLRTNLGALWRAQGEYMGAEEAVRSALMQ-------EHFAAAQKDWRGIHLMTI 508

Query: 578 HTAKGLESPVVFLVD 592
           H +KG E   V + D
Sbjct: 509 HKSKGKEFDEVIIYD 523


>gi|319788732|ref|YP_004090047.1| hypothetical protein Rumal_3724 [Ruminococcus albus 7]
 gi|315450599|gb|ADU24161.1| hypothetical protein Rumal_3724 [Ruminococcus albus 7]
          Length = 1113

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 88/745 (11%), Positives = 196/745 (26%), Gaps = 138/745 (18%)

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I     +                                +      ++ + +        
Sbjct: 244 ITLAARQCIRDMTKLHDQPLKEIRAEDINCCHPDIRQLSE-HLFDYNKPEYKAAGDSVKV 302

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
            +  D   +       A  I   I  ++  D              DI V VR   D    
Sbjct: 303 LAADDVYEE-------ADYICAEICRLVRED---------GYTFNDIAVTVR---DIESF 343

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR-FILSQEDDLSFVCMLKSPLFNF 448
             +   +   Y I    + R  +     +  +  + R  +  +    + + ++KSPL+  
Sbjct: 344 GAVISGVMERYDIPFFLDKRDSVDASAIVHYINTIFRTVLTRKFKTDNIIKLIKSPLYGI 403

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH------- 501
              +I  +           +   +            +  I+EL                 
Sbjct: 404 LNYEISDLEDYCVRWGVDGDMWNEDFTAAPDSGID-LGRINELRKRVITPLVSFKEACTG 462

Query: 502 --------DFFTLI--LGAKKGRQQFISRFGN-------EVIDVLDEF----LNFTLRNE 540
                    F+ L+  L         + R          E+   L +     L+      
Sbjct: 463 ASAAQISRAFYQLLDDLDLSGQTYSLVKRVSTSDNDTETEMSRGLKQLWTMSLSAVRSIY 522

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANH----NEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +        + S  + Y   + +   +      + VRI+    ++     V+F  +    
Sbjct: 523 ELLGDEKITMRSYYDLYSLMLSQMKVSEPPQKLDCVRIVDAAHSRFGGVKVLFAAEVNEG 582

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +F      +  +     +       + + K   +I  + +  LK+          Y  + 
Sbjct: 583 IFPAAVRSRGLLNEHEKE-------LLRLKEDIDITDNALNSLKREKLA-----AYTALC 630

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
             +D+L +    +     +         V      D         +        AY    
Sbjct: 631 TPTDKLYVLYSRSDLLGSEKRPSALVKEVRGILGIDVMNINTLPPDRFCTSYKSAYSVYI 690

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-----------------NP 759
            H  +  +        LM       KL +  +   ++P+ L                 +P
Sbjct: 691 EHSRDNTVSVSSIRDSLMGSAYYHDKLRALDEAGRDKPFRLSESCAKEVFFASETAEVSP 750

Query: 760 STIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVI----FTLPEHKRKNF 804
           + +D   K               S   D    N+GL+IH++L+         PE  R++F
Sbjct: 751 TKLDNYFKCPFMYFCNYGLRLSRSQKMDMDGLNKGLMIHEVLEKAIGSQDRTPEGNREHF 810

Query: 805 ITSYCTKNAKLWPAK---------------------EYKNLLLSITRLLENPMMTTAMSC 843
           +     +  +L                          ++N+      +++   +   +S 
Sbjct: 811 LNMTEEQITELIEGSFTKYYNDVFCGDFGKSKTFIYRFENMKQQAFNIVK--YVQRELSN 868

Query: 844 DSYSEVSVSGKINCPKK------------DIIISGRIDQ--ISISQQN---IFIFEYKTH 886
            S++      ++                  I++ G ID+  I   +     + I +YK  
Sbjct: 869 GSFAPAVTEYRLTKENGADHLDLTLKDGRHIVLIGTIDRADIYEDENGRRFVRIVDYKFR 928

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKIL 911
                ++  +      Q+ IY  +L
Sbjct: 929 RQANFDLGELYCGLNLQMLIYLSVL 953


>gi|213621192|ref|ZP_03373975.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 264

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/183 (8%), Positives = 46/183 (25%), Gaps = 38/183 (20%)

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
              +     +  + G  +H L + +        +           +          L ++
Sbjct: 21  PAMTPHHFPRGASPGTFLHSLFEELDFTQPIDPQWVQEKLELSGFETRWEPVLTRWLDTV 80

Query: 829 TRLLENPM---MTTAMSCDSYSEV----SVSGKINCPKKDIIIS---------------- 865
             +  N     ++     +   E+     ++  +   + D +I                 
Sbjct: 81  LHVPLNETGVSLSVLTEREKQVEMEFYLPIAQPLTAGELDALIRRYDPLSAGCPALDFMQ 140

Query: 866 ------GRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIAQLSIYEKI 910
                 G ID +   +   ++ +YK++                    + +  Q  +Y   
Sbjct: 141 VRGMLKGFIDLVFRYEGRYYLLDYKSNWLGEDSAAYTQTAMAAAMQAHRYDLQYQLYTLA 200

Query: 911 LKD 913
           L  
Sbjct: 201 LHR 203


>gi|168181588|ref|ZP_02616252.1| putative helicase [Clostridium botulinum Bf]
 gi|237796358|ref|YP_002863910.1| putative helicase [Clostridium botulinum Ba4 str. 657]
 gi|182675093|gb|EDT87054.1| putative helicase [Clostridium botulinum Bf]
 gi|229261408|gb|ACQ52441.1| putative helicase [Clostridium botulinum Ba4 str. 657]
          Length = 763

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 22/180 (12%)

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           +  H++IDE QD S ++  V++ +           S  R    VGD  QSIY + G    
Sbjct: 533 KFAHMVIDEAQDYSPLELYVLKLI-----------SKARGYTIVGDLGQSIYYYKG---- 577

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                    +K      ++   I L  S+RST +I+   +KV    +N    ++      
Sbjct: 578 -----IENWEKLIKEVYEEGEYIPLKQSYRSTVEIVDFANKVLRKQKNNLEPAKAVLRHG 632

Query: 296 RH--RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
           +H  +     +    +    V+   + + +         ++       +  L     + I
Sbjct: 633 KHPKKIQYKDEKDFYEKLNSVIETIEEKKDKTIAIICKDYEQCESLKESLHLKEEKQWEI 692


>gi|51893312|ref|YP_076003.1| ATP-dependent deoxyribonuclease subunit B [Symbiobacterium
           thermophilum IAM 14863]
 gi|81388507|sp|Q67MD4|ADDB_SYMTH RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|51857001|dbj|BAD41159.1| ATP-dependent deoxyribonuclease subunit B [Symbiobacterium
           thermophilum IAM 14863]
          Length = 1165

 Score = 72.3 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 81/754 (10%), Positives = 179/754 (23%), Gaps = 168/754 (22%)

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT--VQLWEQVVSQHDSQCNPQ 325
             +L+  D++        G++ D    +       G      V+ +    S       P+
Sbjct: 253 HPVLSTYDQLM-QLAAESGVAVDPPLYLNEPLRFRGAPELAHVERYLFRQSAPAWPGAPE 311

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
           + +     +   + ++A       A  I  ++  +          ++ ++I V+ R   D
Sbjct: 312 RIALVEAQNRREEVAAA-------AREILRLVREE---------GLRFREIAVVAR---D 352

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
                 L   L  ++ I    + R  +  H  ++ L A    ++           LK+ L
Sbjct: 353 LEGYGDLAATLFAEHGIPAFIDRRRTVAHHPLVELLRAALEVVVQDWAYGPVFRYLKTDL 412

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGI--------------SKFQHVIKYIHEL 491
              S  +I  +     E        Q+                       Q ++  IH +
Sbjct: 413 TGVSRAEIDLLENYVIEHGIRGRAWQQQEPWQYLRRYTLEEDAVPAGPAQQALLDEIHRI 472

Query: 492 IHIAQFC----------------SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
              A                   +  +  T +       +        +        L  
Sbjct: 473 RRRATAPLLAFQRRLQRRGRPGPTVREITTYLFQLLDDLKVARQLEAWKAEAEQRGDLET 532

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRA------------------HSANHNEVRIMTV 577
              +EQ     L+     +E     +                          ++V + TV
Sbjct: 533 AREHEQVWTRVLELFDQIVEGLGDQVLSPKVYLQVLSAGLDGLKLGLIPPGLDQVIVGTV 592

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
             ++        ++    + F  +  +                   + + R       + 
Sbjct: 593 ERSRHAGVRATLILGATEKDFPPQPAEDAIFTD-------------RERERLKQSGLDVG 639

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                   +   L YV +TR SD L I       + + +        +   F   +    
Sbjct: 640 PTSLERLFQEQFLTYVALTRGSDFLWISYPLADESGRAAAPSPVVGRMRRLFPELKPRPA 699

Query: 698 IKLTNSINKDEWIAYEWSTHHPENT-------------------------PLEREETIKQ 732
                                                               +       
Sbjct: 700 APPAPDAEAAVAQVATPRQLAAAVARALRRARSGYAVEPHWLDLYQCIVLDPDLHREGAA 759

Query: 733 LMDEQKIPKKLFSPIKNDINEPYIL--------NPSTIDTKGKTNLESLLSDN------- 777
           ++      + L         E   L        + S ++                     
Sbjct: 760 VLAAVGYEEWLRRRGTPVGRELARLLYGDRLVTSVSRLEAFLSCPFRHFAGYALRLQGRA 819

Query: 778 ----QTFNRGLIIHKLLQV-----------IFTLPEHKRKNFITSYCTKNAK------LW 816
                    GL  H  L +             TL   +    + S   + A       L 
Sbjct: 820 EFTVSAPEFGLFYHAALSLFVRELERDGLAWDTLTPDEAWRRMDSIIDRLAPRLQSEILL 879

Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSY----SEVSVSGKINCP-------------K 859
            + +++ LL  I R L++ +    +S          V+V                     
Sbjct: 880 SSPQHRYLLRVIRRTLQSSL--DYLSEHVLHGEFRPVAVEVPFGEEMDGLPPVEVDLPGG 937

Query: 860 KDIIISGRIDQISISQQN-----IFIFEYKTHHH 888
             +++ GRID++   +       + + +YK+   
Sbjct: 938 GRVLLRGRIDRVDALEGRDGRWYVRVIDYKSGRR 971


>gi|110677845|ref|YP_680852.1| hypothetical protein RD1_0453 [Roseobacter denitrificans OCh 114]
 gi|109453961|gb|ABG30166.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 985

 Score = 71.9 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 61/700 (8%), Positives = 164/700 (23%), Gaps = 68/700 (9%)

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
               ++          +       +++      +           +  +   +L +  S 
Sbjct: 269 GRSDITPWHDAPPPSPARNALVSLSLRPAPVTDAWLTEGPKLHDLNKATDQITLLEAPSP 328

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  IA  +   +          ++        +L R+         +         +
Sbjct: 329 RSEALAIALRLRKAVEEG-------QKAAVITPDRMLTRQITAALDQFDILPDDSAGAPL 381

Query: 403 SVVGNDRFILTDHLAIK---DLMALGRFILSQEDDLSFVCM----------LKSPLFNFS 449
            +    RF+           D  AL   +                      L+       
Sbjct: 382 HLSPPGRFLRHVAALFHRRLDAEALLTLLKHPLTHSGSNRAAHILNTQRLELRIRRDGLP 441

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLI 507
             D   I           ++ +     G    Q                  +       I
Sbjct: 442 YPDADSIGQALAGISPNADHQRGVDAWGAWVGQTFAAMYSTTEQPLSHWAQTHIALAEAI 501

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHS 566
                G+            + L    N           +  +  + +         R   
Sbjct: 502 SCGLDGQDTGELWKQKAGQEALKVMTNLAELAHHGGPMTASDYANLVGALLSEGEVRDRD 561

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A H ++ I     A+   + +V L       +         +  +L    G+ +   +  
Sbjct: 562 APHPDIMIWGTLEARVQGADLVILAGLNDGTWPEAPAPDPWLNRALRHQAGLLLPERRIG 621

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
              +     I                     A+ ++ + +   + + +    R    +  
Sbjct: 622 LAAHDYQQAI---------------------AAPEVWLTRSIRSDDAETVASRWVNRLCN 660

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                  +     L    ++ ++   +                  +     +  +   + 
Sbjct: 661 LLSGLKGQDGPALLEAMQDRGQYWLDQTVALEKVEPATPAARPAPRPPLAARPKRLAVTD 720

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
           IK+ I +PY +    +       L  L+ +     RG + H +++               
Sbjct: 721 IKHLIRDPYTIYAKHV--LRLRKLGPLVQNPDALLRGTVSHDVMEKFVRQTLRDPATLNA 778

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK------ 860
            +  + A+   +++          L     ++     +  +   +   +           
Sbjct: 779 DHLIEIARDVLSRDVPWPAARALWLARLTRISEWFVMNERARQHIGTPVVFEDDALGKMV 838

Query: 861 ----DIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK-----I 910
               +  ++ R D+I  ++     I++YKT      + + +      QL I         
Sbjct: 839 WPDIEFTLTARADRIDQTEDGDALIYDYKTGSPPTVKQQTLFDK---QLLIEAAMVEQGA 895

Query: 911 LKDSYPNKSLVCLLIYVSEPKVF---IIPQNKLNKAFAEI 947
            +   P+       I +    V     +      +  AE+
Sbjct: 896 FEKLGPHHVAQATFIGLGSNPVEVPAPLDSEPPAQILAEL 935


>gi|167918354|ref|ZP_02505445.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei BCC215]
          Length = 340

 Score = 71.9 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 97/292 (33%), Gaps = 9/292 (3%)

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNE 540
           ++       + +       +  + G  +  ++ ++    E      + L E        +
Sbjct: 12  VERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQ 71

Query: 541 QNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF          
Sbjct: 72  PGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLR 131

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      +D+ G  +        +       +   +    E  RL+YV +TRA 
Sbjct: 132 EPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVYVALTRAV 189

Query: 660 DQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            +  +    + ++ + K++ +     +V  +  + +   K    ++   + W A      
Sbjct: 190 YRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPV 249

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                P+           + +  +      +   +   I + S++ +    +
Sbjct: 250 TLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARD 301


>gi|322807223|emb|CBZ04797.1| uvrd/Rep helicase family protein [Clostridium botulinum H04402 065]
          Length = 763

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 102/314 (32%), Gaps = 38/314 (12%)

Query: 46  ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105
                  +++       EE  + +   +       + N   +   +    L + +++   
Sbjct: 411 DKDYILKIREVRAKYEGEEERTNIIKLY-----EERDNKKEKIKLEAEEVLNKTIREWLI 465

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK----NCVLDFEDLIINTNDLLK 161
           + +    R           A+  +   +  +Y + K +    N  +D EDL       +K
Sbjct: 466 DDVVDVYRDMYIDEENLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAALLYLKIK 525

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
              V  +       +  H++IDE QD S ++  V++ L           S  R    VGD
Sbjct: 526 IDGVDNY-------KFAHMVIDEAQDYSPLELYVLKLL-----------SKARGYTIVGD 567

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             QSIY + G             +K      ++   I L  S+RST +I+   +KV    
Sbjct: 568 LGQSIYYYKG---------IENWEKLIKEVYEEGEYIPLKQSYRSTVEIVDFANKVLRKQ 618

Query: 282 ENAQGLSEDSTTTIRH--RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
           +N    ++      +H  +     +    +    V+   + + +         ++     
Sbjct: 619 KNNLEPAKAVLRHGKHPKKIQYNDEKDFYEKLNSVIETIEEKKDKTIAIICKDYEQCESL 678

Query: 340 SSASILARRIAYTI 353
             +        + I
Sbjct: 679 KESLHSKEEKQWEI 692


>gi|159186465|ref|NP_395961.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
 gi|159141525|gb|AAK90402.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58]
          Length = 566

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 22/155 (14%)

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              LL +     ++   I +  +HIL+DE QD   I   ++  +++          +   
Sbjct: 175 AYRLLNE---VPFVLRAIARRYSHILVDEAQDIGTIHQALLEKISD----------AGAE 221

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L  +GD  Q I+ F GA              RA    ++     L  +FRS   I+ + +
Sbjct: 222 LSLIGDVNQGIFEFTGA----TGDFLGNYHSRAGVTAKE-----LNRNFRSVPSIVKIAN 272

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
           ++    +     + D  +   + +    +     L
Sbjct: 273 QLSGRKDEPDRAAPDELSGAFYIAVDHDKRDEALL 307


>gi|170760161|ref|YP_001788226.1| putative helicase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407150|gb|ACA55561.1| putative helicase [Clostridium botulinum A3 str. Loch Maree]
          Length = 763

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 100/314 (31%), Gaps = 38/314 (12%)

Query: 46  ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105
                  +++       EE  + +   +       + N   +   +    L + +K+   
Sbjct: 411 DKDYILKIREVRSKYEGEEERANIIKLY-----EERDNKKEKITLEAEEVLNKTIKEWLI 465

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK----NCVLDFEDLIINTNDLLK 161
           + +    R           A+  +   +  +Y + K +    N  +D EDL       +K
Sbjct: 466 DDVVDVYRDMYIDEENLNYATSGIIPEVLVNYIKNKIEKEIENEKIDEEDLAAILYLKIK 525

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
              V  +       +  H++IDE QD S ++  V++ L           S  R    VGD
Sbjct: 526 IDGVDNY-------KFAHMVIDEAQDYSPLELYVLKLL-----------SKARGYTIVGD 567

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             QSIY + G             +K      ++   I L  S+RST +I+   +KV    
Sbjct: 568 LGQSIYYYKG---------IENWEKLIKEVYEEGEYIPLKQSYRSTVEIVDFANKVLGKQ 618

Query: 282 ENAQG--LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
           +N      +         +     +    +    V+   + + +         ++     
Sbjct: 619 KNNLEPAKAVLRHGKYPKKIQYKDEKDFYEKLNSVIETIEEKKDKTIAIICKDYEQCESL 678

Query: 340 SSASILARRIAYTI 353
             +  L     + I
Sbjct: 679 KESLHLKEEKQWEI 692


>gi|114800509|ref|YP_760585.1| hypothetical protein HNE_1884 [Hyphomonas neptunium ATCC 15444]
 gi|114740683|gb|ABI78808.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 1017

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/494 (9%), Positives = 111/494 (22%), Gaps = 35/494 (7%)

Query: 441 LKSPLFNFSEDDIF---KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
           L+ P    S DD+     I  +           Q  A   + +   +++       I   
Sbjct: 458 LRGPRRWKSLDDLAHSIDIRHKLEPHSPFKREDQDEAILLVQRLSEIMEESGADFSILDG 517

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQ 556
            +       +        +    +  E        L             S +     ++ 
Sbjct: 518 VTADAAAKRVADLAGAISETPMPWAGEDGAGASNLLQRLAELGPFLGEMSPEAFADLVDA 577

Query: 557 YPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
               +        H  + I     A+   +  + L      V+  K      +       
Sbjct: 578 ESSNLPVQTGEPEHPRLSIWGPLEARLQSADRLILAGLNEDVWPEKPPADAFLPRRFRAP 637

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            G+     +     +  + L                      A+  +++   +   +   
Sbjct: 638 LGLNDPEERMGLSAHDFAQLA---------------------AAPHVVMLSAARRDDSPS 676

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
              R  + +   +           L               T      P +          
Sbjct: 677 VESRWVWRLRTLAEGAFGDRTAELLKGETGALLDWVSALQTRGVGTLPADFSAEPTPRKR 736

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
                    S  + D  +    +       G   ++ L +   +  RG  IH  L     
Sbjct: 737 TPAEWPTRLSVTRVDRLQRDPYSIWAESVLGLRQVDVLGAPLASNLRGTAIHAALDAFEK 796

Query: 796 LPEHKRKNFITSYCTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDSYSEVS 850
               K    +              E        +   +         +  +      EV 
Sbjct: 797 EGVAKDAGSLLELIRVELARTGEPESSWAGRLAIWQDVADWYLEWRASRDIGGKFVREVR 856

Query: 851 VSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
               +        +S   D+I  +    + I ++KT        + I   +  Q+ + + 
Sbjct: 857 GEISVEIAGHPFELSATADRIERTATGELVIVDFKTGQPP--TDKAIDAGYDQQMPL-QA 913

Query: 910 ILKDSYPNKSLVCL 923
           I+      K++   
Sbjct: 914 IIASKGGFKNVRAA 927


>gi|142439|gb|AAA22200.1| ATP-dependent nuclease [Bacillus subtilis]
 gi|2226191|emb|CAA74481.1| ATP-dependent nuclease [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1166

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 65/725 (8%), Positives = 190/725 (26%), Gaps = 156/725 (21%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR--IAYTISNMIGTDTIFSNGKKR 369
            ++              +    ++L    +A+  A    IA  I  ++           +
Sbjct: 288 PELAHLEAQYEARPAIPYAEKQEALTVMQAANRRAELEGIAREIHALVRE---------K 338

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + KD+ +L R          + + +  DY+I    + +  + +H  I+ + +    + 
Sbjct: 339 GYRYKDVAILAR---QPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSLDVLK 395

Query: 430 SQEDDLSFVCMLKSPLF---------------------------NFSEDDIFKICTQRHE 462
                 +    +K+ L                                    +   +R  
Sbjct: 396 GNWRYEAVFRCVKTELLFPLNEPKAKVREQVDQLENYCIAYGIKGDRWTKGDRFQYRRFV 455

Query: 463 TETVYEYIQKFANCGISKFQHVIKYI--------HELIHIAQFCSPHDFFTLILGAKKGR 514
           +               +       +I          +          +     L      
Sbjct: 456 SLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQLQKRMKKAKTVQEKAEALYRYLEETDVP 515

Query: 515 QQF--------------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            +                ++   +  D + + L   +    +   SL      +E    +
Sbjct: 516 LKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEISLDLFQQMIEAGAES 575

Query: 561 IKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
           +  +      ++V +  +  ++   +   F++     V   +  +   +     +     
Sbjct: 576 LTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTI 635

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                S               +    + + L+Y+  +  SD+L +      +  K     
Sbjct: 636 GVELSSGG-------------RERLLDEHFLIYMAFSSPSDRLYVSYPIADAEGKTLLPS 682

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                + + F + +          ++ +E + Y  +    ++    +     +  D   +
Sbjct: 683 MIVKRLEELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQSFTASQLRLWTREYDISDV 742

Query: 740 PKKL------------------------------FSPIKNDINEPYILNPSTIDTKGKTN 769
                                              S  +    E    + S ++T     
Sbjct: 743 WWSTYNVLMSEQDRLQSKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETFNACP 802

Query: 770 L-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
                       E      +  + G + H  L++I      ++ ++      +  +L+  
Sbjct: 803 FSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLRDEKLDW-RDLTKEQCELFSY 861

Query: 819 KEYKNLLLSITR--LLEN--------------PMMTTAMSCDSYSE--VSVSGKINCPKK 860
              + L   + +  LL +                ++  +S  + +   V +  ++    K
Sbjct: 862 DAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILSEHAKASGFVPIGLELGFGGK 921

Query: 861 DII--------------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIA 902
             +              + GRID++  ++ +    + I +YK+      ++  + Y    
Sbjct: 922 GPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS-DKGLDLAEVYYGLAL 980

Query: 903 QLSIY 907
           Q+  Y
Sbjct: 981 QMLTY 985


>gi|58039097|ref|YP_191061.1| hypothetical protein GOX0628 [Gluconobacter oxydans 621H]
 gi|58001511|gb|AAW60405.1| Hypothetical protein GOX0628 [Gluconobacter oxydans 621H]
          Length = 1016

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 90/356 (25%), Gaps = 54/356 (15%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            H  V I+ V  A+ L   VV L      V+         +   +    G+P    Q+  
Sbjct: 588 AHPRVSILGVLEARLLAFDVVVLGGLNEGVWPPATDPGPWLSRPMRVRVGLPSPERQTGV 647

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
             +     I   K++      R        A   + +         +        D    
Sbjct: 648 SAHDFVSTILASKEAVFASSARREGAPGVPARWMVRMDAFLG-GRSQSLPLHPALDWQRC 706

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                   + +                        P        + +   +I   +  P 
Sbjct: 707 LDQPLAGAEAVAPP--------------------EPRPPVALRPRGLSITEIETWMHDPY 746

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                    L            L+ L    +  + G+I+H  ++ + +    +     ++
Sbjct: 747 AIYAKHVLKLRA----------LKPLEEGAEHADFGMIVHDAMERVLSDFPERWPANASA 796

Query: 808 YCTKNAKL-------------WPAKEYKNLLLSITR-----LLENPMMTTAMSCDSYSEV 849
              +                 W       +   +        L+        +   + EV
Sbjct: 797 ILRRVFAEELAKANMRPALVNWWGPRLARIADWVAEKEAAYRLDMEESGP--AQGRFVEV 854

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPYTHIAQL 904
           + S ++        + GR D+I I    +  +F+YKT      +   +      QL
Sbjct: 855 TASFRLQAAFAPFELRGRADRIDIGADGLATVFDYKTGQPPSGKN--VAEGWSVQL 908


>gi|326315434|ref|YP_004233106.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372270|gb|ADX44539.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 665

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 80/672 (11%), Positives = 158/672 (23%), Gaps = 101/672 (15%)

Query: 1   LKNRFG--LSLNESYELI--YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
           L +R G  +  +     I   + L              ++  +E         A  LQ+ 
Sbjct: 74  LHDRLGRYMPADAREVRIMTVEQLCAGLLQAQGLPVNTLAEPLERQLLIRQAHAALLQEL 133

Query: 57  SQTQCIEER----FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
                 E        L    F   +   ++ ++ ++I ++        +    ++     
Sbjct: 134 RHEAPPEAADFLARELDVQAFTDFEALAKQRLLHRDIAREGIHAAAYCRDHALDYGLYLL 193

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                ++ +            +  YE A ++   LDF D                W    
Sbjct: 194 LGRYERLRRGPDDEPQFYAPGDCTYEIA-RQLGELDFGD-------------PCPW---- 235

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +    + +L DE+QD       V+R L           S        GD  Q I      
Sbjct: 236 LQGRYDAVLFDELQDLDEAAMLVLRHLVA---------SGNGVFVGAGDFNQHI------ 280

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P          Q+      +   ++ L  ++R    I   ++ +F +           T
Sbjct: 281 LPGAFSVFGNGLQRIRQELPEPPEVLTLNTTYRFGKAICEGLNPLFGVEFETH--YPTKT 338

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                 +    +    QL         +       +          E S  +  R     
Sbjct: 339 ARFERLAYDSDEDCARQLLAIHQFVQRTPPPASGAAPCLTVVLRSPEDSVLLEWRFAHEG 398

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I         F    +  +       L        L   +     +     +    R   
Sbjct: 399 IHYACKGLKRFYQRPEIALVLALFRALPGCGGQVRLTQGILSSALDGL---MRYVRRGSR 455

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            D   + + +   + +            + S L              R     +      
Sbjct: 456 PDADVLANGLFDLQALAQHSTAEVDTRAVASELI---------HQPDRMRDFLLRASFDP 506

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            A    +  +  +    E+   A     H                      E    LD  
Sbjct: 507 NAPVASAACEAWLALPAEVCADAGRLCNHPLLRRFFAE-------APISPQEHRQCLDSL 559

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
              +      S       ++ + +      R + A    ++++TV   KG E   V +  
Sbjct: 560 QALSRICAGLSVDEFLGQLALMVESGIRQHRQNEAPS--LQLLTVERCKGHEYEYVAVPL 617

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                F                                      +    +       +LY
Sbjct: 618 VERGRFP-------------------------------------RAAALNEAYRERNMLY 640

Query: 653 VGMTRASDQLII 664
           V +TRAS  L +
Sbjct: 641 VALTRASRHLWL 652


>gi|328911094|gb|AEB62690.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus
           amyloliquefaciens LL3]
          Length = 1166

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 74/752 (9%), Positives = 202/752 (26%), Gaps = 156/752 (20%)

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           + A+ L+ D +    H + R      V     + SQ+D +           F  +  ++ 
Sbjct: 264 QTAKELNADISCKELHGTKRHQH---VPELACIESQYDVRPAAVYTGGQEAFTVIQAQNR 320

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            + L   IA  I +++           R  + +D+ +L+R          L + +  DY 
Sbjct: 321 RAEL-EGIAREIQSLVRD---------RGYRYRDMAILIR---QPEDYKDLLKEVFADYG 367

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-FNFSE---------D 451
           +    + +  +  H  I+ + +    +       +     K+ L F   +         D
Sbjct: 368 LPYFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIREQVD 427

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQH-------------------------VIK 486
            +   C         +   ++F                                   +I+
Sbjct: 428 QLENYCIAYGIKGERWTNGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETREWMAEPLIR 487

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQF--------------ISRFGNEVIDVLDEF 532
             + L       S  +   L L       +                ++   +  D + + 
Sbjct: 488 LQNRLKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQQAEEAGNMIEAQQHGQAWDAVIQL 547

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
           L            SL      LE    ++  +      ++V +  +  ++   +   F++
Sbjct: 548 LEEFTGMMGEDEMSLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSCTFVI 607

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                V   +  +   +     +          S               +    + + L+
Sbjct: 608 GANDGVLPARPDENGVLSDDDREWLKAVGVELSS-------------AGRERLLDEHFLI 654

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           Y+ ++  SD+L +      +  K        + + + F + +          ++++E + 
Sbjct: 655 YMALSSPSDRLYVTYPIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEEEQLQ 714

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY---------------- 755
           Y  +    +     +     +  +   +    ++ +  + +                   
Sbjct: 715 YLVNKQVAQTYTASQLRLWTREYEISDVWWSAYNVLMKEPDHERAKKLFSSLFFRNEAKR 774

Query: 756 --------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLL 790
                           + S ++                  E      +  + G + H  L
Sbjct: 775 LDRPVSRQLYGEHIKGSVSRMEAFNACQFSHFASHGLQLKERQFFKLEAPDIGQLFHSSL 834

Query: 791 QVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSIT-----RLLENPMMTT--- 839
           ++I         + ++     C   +     +    L   I             +     
Sbjct: 835 KLISDRLREQKLEWRDLTKDQCRNFSYDAVERLAPRLQKEILLSSNRHFYVKEKLQKIVT 894

Query: 840 ----AMSCDSYSE--VSVSGKINCPKKDII--------------ISGRIDQISISQQN-- 877
                +S  + +   V +  ++       +              + GRID++  ++ +  
Sbjct: 895 RVSGILSEHAKASGFVPIGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKG 954

Query: 878 --IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
             + I +YK+      ++  + Y    Q+  Y
Sbjct: 955 LLLRIVDYKSS-DKGLDLAEVYYGLALQMLTY 985


>gi|291525356|emb|CBK90943.1| ATP-dependent nuclease, subunit B [Eubacterium rectale DSM 17629]
          Length = 1156

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 60/674 (8%), Positives = 167/674 (24%), Gaps = 137/674 (20%)

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGN 407
           +IA  I+ ++  +          ++ +DI ++     D  +     R + + Y I    +
Sbjct: 322 KIARRINELVRNE---------NLRYRDIAIVT---GDVNIYAGYVREIFDKYNIPYFID 369

Query: 408 DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
               +  H  I+ + ++           +    L+       + +I  +           
Sbjct: 370 ATQEILFHPFIEFIRSIPDIAAQNFSADAVFRFLRCGFSELLDSEIDVLENYVLACGVRG 429

Query: 468 EYIQKFANCGISKFQHV--IKYIHELIHIAQFC--SPHDFFTL----------ILGAKKG 513
           +         + K +    I+ +++            +  F+            +     
Sbjct: 430 KSAWDKKWVRLPKHKAGYDIELLNQSREYIMELLKPVYQVFSDKKSTVKDYVLAIYKLIV 489

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA------ 567
                 +   +   +LD       +     Y  + +L  +                    
Sbjct: 490 LLDIPDKLAKKEQALLDAGDQTASKEYGQIYKIVMQLFEKYVAVLGDECMDAEEFTQILD 549

Query: 568 -------------NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                         ++ V I  +   +     V+F       +      +          
Sbjct: 550 AGLDAADVAVIPPGYDTVTIGDIERTRLTNIKVMFFAGVNDGIVPKAAGR---------- 599

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             GI     +   +   +       +++  +     LY+ MT+ S +L I      S +K
Sbjct: 600 -GGIISQYEREALKELDIELAPGAREQAFIQ--RFYLYLNMTKPSRELYISYTRLDSEKK 656

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSIN----------------KDEWIAYEWSTHH 718
            +       ++   F      +   +   ++                 D W     +   
Sbjct: 657 AAQPSYLIGILKGMFPELVVTETEDVEQLLDISSRQSALDYLLSNEVDDRWCEIAAAVML 716

Query: 719 PENTPLER-----------------EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
            + +  +                  E  I    +         +  ++        + + 
Sbjct: 717 YDASVSDAGDGNEVDDKEFTQKNSVERLINARFEHYSKDPISRNVARSIYGRHMEGSITR 776

Query: 762 IDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITS 807
            +   +              E   S   + + G I H+ L+              +   +
Sbjct: 777 FEQFARCAYAHFLNYGLRLTEREESGFTSLDMGNIYHEALERYSKKLDRESTDWFSVTDA 836

Query: 808 YCTKNAKLWPAKEYKN-----LLLSITRLLENPMMTTAMSCDSYS--------------- 847
              + A     +         +  +         M        ++               
Sbjct: 837 KRDELAMEAINEVIDEYAGFGIFDTAESQHSISHMKAVFKQTVWALTTQIRRGSFVPERF 896

Query: 848 EVSVSGKINCPKK-DIIISGRIDQI--SISQQNIFI--FEYKTHHHVPQEIEHIPYTH-- 900
           E S    ++      + I GR+D+      +  +F+   +YK+       +  +   +  
Sbjct: 897 EFSFYESLDMANDVTVDIKGRVDRTDTYTDEGRLFVKVLDYKSG----NTVFDLVKLYYG 952

Query: 901 -IAQLSIYEKILKD 913
              QL++Y   + +
Sbjct: 953 TQLQLAVYMDAVME 966


>gi|222147061|ref|YP_002548018.1| double-strand break repair protein AddB [Agrobacterium vitis S4]
 gi|221734051|gb|ACM35014.1| double-strand break repair protein AddB [Agrobacterium vitis S4]
          Length = 1062

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/511 (10%), Positives = 120/511 (23%), Gaps = 59/511 (11%)

Query: 424 LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
               I  +    +      +PLF+      F          +  +  ++ A         
Sbjct: 479 ALEAIALRGGTGAIDIAALAPLFDEQVVAQFDDRHPPAWRRSFTDQTRQQARILAEAIAE 538

Query: 484 VIKYIHELIHIAQFCSPHDF---FTLILGAKKGRQQFISRFGN---------EVIDVLDE 531
            ++ +   +                          + ++R            E   VL  
Sbjct: 539 AVEPLAGHVVAKPDGHHFTTRLSLREWAERTGQVLEAVARTDEGDLGPLWANEAGAVLAR 598

Query: 532 FLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            L+  +  +    +   + I  +         +  S  H  V I     ++      + L
Sbjct: 599 LLSEIMETDGQLSADGPQWIEIVAALTASESVKPKSLRHPRVFIFGALESRLQSVDTMIL 658

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
                  +         +  S+  + G+     Q     +                    
Sbjct: 659 GGLNEGSWPGTTTNNPFLSRSMKTEMGLEPPERQIGQLAHDFE----------------- 701

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
               M   +  LI C+     +      R    ++     +              K    
Sbjct: 702 ----MANGTRHLIYCRALRQGSAPTVASRWLQRLLALGGKD---------FAETLKARGE 748

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
            Y       +    +      Q      +  K +S  +         +           +
Sbjct: 749 RYRHFADLLDKGADQAAAQRPQPKPPADLHPKTYSFSEVGRLRRDPYSIYARRILKLDPV 808

Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE---------- 820
           E   SD     RG + H +++        K         ++ A    A+E          
Sbjct: 809 EPFNSDPGASERGTLYHAIVEQFVARMPEKLGPDTEQLMSEIADTLFAEENLPPHIHVVW 868

Query: 821 YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI 880
            K         +E             +E      +   + DI ++G  D+I I   +  I
Sbjct: 869 RKRFSEVGLAFIEWQRQRD--PAKLVTEAR--AGVELGEIDIRLTGIADRIDIRAGHADI 924

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            +YKT  +    +         QL++    L
Sbjct: 925 IDYKTGLNP--SVSQARSLLDPQLALEAAAL 953


>gi|330824161|ref|YP_004387464.1| hypothetical protein Alide2_1552 [Alicycliphilus denitrificans
           K601]
 gi|329309533|gb|AEB83948.1| hypothetical protein Alide2_1552 [Alicycliphilus denitrificans
           K601]
          Length = 625

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 74/533 (13%), Positives = 142/533 (26%), Gaps = 108/533 (20%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              +L  +D++  T   +    +   +  K      +I +DE QDT+    E +R +  +
Sbjct: 168 AEGILGHDDILKLTPACVAAHPLLRQLVAK---RFPYIFVDESQDTNPEVVEALRHIAGE 224

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIY-SFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                        +   GD  Q IY S  G  P      +                I  P
Sbjct: 225 --------HPGLCVGFFGDPMQKIYMSGVGTVPLNDGWAE----------------ITKP 260

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            +FR    +L V++ +                       R    G   L +         
Sbjct: 261 ENFRCPTSVLGVINAI-----------------------RAPGDG---LEQVRGRTITVD 294

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              Q  + TS    LP ++  S     I   ++   G     S+ ++  ++    LVLV 
Sbjct: 295 GIEQPVAGTSNLFILPADAERSARLAAIRQWLAAETGDGLWLSDVREGDVRL---LVLVH 351

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL---GRFILSQEDDLSFV 438
           +     L         ND    +  ++         ++ L+             D  + +
Sbjct: 352 RMAANRLGFPNLYAALNDR-APMSLSEGLSDGTAWPLRPLVQHILPLVVAAQAGDRFTVI 410

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
             L+S         +                  +     ++  Q  +  +  L+      
Sbjct: 411 STLRSECPRLEPARL----------------RGQATAPVLTALQQALDGLVGLLAAGSQA 454

Query: 499 SPHDFFTLILGAKKGR--QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
           +  D  T +   +  R   +F      E +D                   L        +
Sbjct: 455 TIRDVLTHVRDNELLRLDDRFAMHLVAEPVDDGSSGFENVQAYLACGVDELWAYRRYFTE 514

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
             P                T H  KG +   V +V    +    ++    ++      D 
Sbjct: 515 ESP--------------FATHHGVKGAQFERVLVVIDDEEAGFRQYSYGKYLGYVPLSDK 560

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                              +   ++S  +   RL YV  +RA+  L +     
Sbjct: 561 D---------------EANLAAGEESVLDRTRRLFYVCCSRATKDLAVVAFVP 598


>gi|187778514|ref|ZP_02994987.1| hypothetical protein CLOSPO_02109 [Clostridium sporogenes ATCC
           15579]
 gi|187772139|gb|EDU35941.1| hypothetical protein CLOSPO_02109 [Clostridium sporogenes ATCC
           15579]
          Length = 766

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 22/180 (12%)

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           + +H++IDE QD S ++  V++ L           S  R    VGD  QSIY + G    
Sbjct: 536 KFSHMVIDEAQDYSPLELYVLKLL-----------SKARGYTIVGDLGQSIYYYKG---- 580

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS--IPENAQGLSEDSTT 293
                    +K      ++   I L  S+RST +I+   +KV            +     
Sbjct: 581 -----IDKWEKLIKEVYEEGEYIPLKQSYRSTVEIVDFANKVLRKQKNNLQPAKAVLRHG 635

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               +     +    +    V+   + + +         ++          L     + I
Sbjct: 636 KYPEKIQYQDEKDFYEKLNSVIETIEKKEDKTIAIICKDYEQCESLKEFLHLKEEKQWEI 695


>gi|321116569|dbj|BAJ72268.1| DNA helicase [Acidovorax sp. KKS102]
          Length = 625

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 71/532 (13%), Positives = 140/532 (26%), Gaps = 106/532 (19%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              +L  +D++  T   +    +   +  K      +I +DE QDT+    E +R +  +
Sbjct: 168 AEGILGHDDILKLTPACVAAHPLLRQLVAK---RFPYIFVDESQDTNPEVVEALRHIAGE 224

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        +   GD  Q IY                           ++ I  P 
Sbjct: 225 --------HPGLCVGFFGDPMQKIYMSGAGTVPLND---------------GWAEITKPE 261

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           +FR    +L V++ +                       R    G   L +          
Sbjct: 262 NFRCPTSVLGVINAI-----------------------RAPGDG---LEQVRGRTITVDG 295

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             Q  + TS    LP ++  S     I   ++   G     S+ ++  ++    LVLV +
Sbjct: 296 IEQPVAGTSNLFILPADAERSARLAAIRQWLAAETGDGLWLSDVREGDVRL---LVLVHR 352

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL---GRFILSQEDDLSFVC 439
                L         ND    +  ++         ++ L+             D  + + 
Sbjct: 353 MAANRLGFPNLYAALNDR-APMSLSEGLSDGTAWPLRPLVQHILPLVVAAQAGDRFTVIS 411

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
            L+S         +                  +     ++  Q  +  +  L+      +
Sbjct: 412 TLRSECPRLEPARL----------------RGQATAPVLTALQQALDGLVGLLAAGSQAT 455

Query: 500 PHDFFTLILGAKKGR--QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
             D  T +   +  R   +F      E +D                   L        + 
Sbjct: 456 IRDVLTHVRDNELLRLDDRFAMHLVAEPVDDGSSGFENVQAYLACGVDELWAYRRYFTEE 515

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
            P                T H  KG +   V +V    +    ++    ++      D  
Sbjct: 516 SP--------------FATHHGVKGAQFERVLVVIDDEEAGFRQYSYGKYLGYVPLSDKD 561

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                             +   ++S  +   RL YV  +RA+  L +     
Sbjct: 562 ---------------EANLAAGEESVLDRTRRLFYVCCSRATKDLAVVAFVP 598


>gi|119503959|ref|ZP_01626040.1| hypothetical protein MGP2080_09423 [marine gamma proteobacterium
           HTCC2080]
 gi|119459962|gb|EAW41056.1| hypothetical protein MGP2080_09423 [marine gamma proteobacterium
           HTCC2080]
          Length = 875

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 65/594 (10%), Positives = 153/594 (25%), Gaps = 90/594 (15%)

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK-----ISVVGNDRFILTDHLAIKDL 421
           + R       +VL+   +D P + +  R   +        + V  +    L+     +D 
Sbjct: 210 RHRDNAGSTAIVLLDFNRDRPELEYQLRQEFDCLGARYAALPVNFSSGMPLSKTPMFRDA 269

Query: 422 MALGRFILSQED----DLSFVCMLKSPLFN----FSEDDIFKICTQRHETETVYEYIQKF 473
           +   R   + +         + +L+SP  +         + ++     +  + +   +  
Sbjct: 270 LMALRVASAYDSVALLRSEVLALLRSPFLHGGEDLDGIALLQLRKACTDLTSEHIDKRDL 329

Query: 474 AN-----CGISKFQHVIKYIHELIHIAQFCSPHDFFTLI-----LGAKKGRQQFISRFGN 523
            +        +    V K +           P  +  +I     L    GR    S    
Sbjct: 330 NHLAETFAPEAHLTQVFKTLRTDRSTRGKRLPSRWLDVIRSVLRLWQWPGRAALDSLEYQ 389

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           +   +        +++      S Q++I   EQ               V++       GL
Sbjct: 390 QFERLEVALDELVMQDCITGELSFQQVILLWEQCLDDRVFQPKTEEGAVQVFGPQEVVGL 449

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
               +++    S +   +      +   L    G+                         
Sbjct: 450 RFDALWICGLQSGLLPQRPQLLPFLPNWLQRHLGLLNSDS-------------------- 489

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFHNDERVKKIKLTN 702
                    V +  ++  L+    +     + S       + +  S            T 
Sbjct: 490 ---------VALEASAVALLNSFRATHGEVRASYASEHEGLEILPSHLARPIASDDSPTQ 540

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                 W          E   +  +  I+       I  +   P +  ++    L P+ +
Sbjct: 541 QQAPKHWPEPSPLELLDEGNVVVGDADIQWGGGASLISNQSNCPFRAWVSH--RLGPADV 598

Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLL---------------------QVIFTLPEHKR 801
                      +       RG I+H  L                     + +      + 
Sbjct: 599 AA--------PVFGLTPAERGNIVHDALRFTWEILKDSHSLRAMNATQIESLTRESTERA 650

Query: 802 KNFITSYCTKN----AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
              +     +      K   +      +  +  LL + +   A    ++S +        
Sbjct: 651 VQALERRAERRHCNVRKRVGSACLDLEIQRVAALLNSWLELEAQREGNFSVIEQEDSHEL 710

Query: 858 PKKDIIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
               +I++ R D+I   +     + +YKT             +  AQL +Y  +
Sbjct: 711 TLGSLILNLRPDRIDQLEGGRQVVIDYKTGAVHRSSWLGDRPS-DAQLPLYALL 763


>gi|157786457|ref|YP_001491634.1| Putative RecB family exonuclease [Mycobacterium phage U2]
 gi|40769377|gb|AAR89703.1| gp63 [Mycobacterium phage U2]
          Length = 234

 Score = 71.9 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 39/140 (27%), Gaps = 15/140 (10%)

Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYK-----NLLLSITRLLENPMMTTAMSCDSYSEVSV 851
              +  N    + +   +     E +       +      ++N            +   +
Sbjct: 52  ATEETPNLGWWFASGPYRGADDIERRWGIGLQQVDKTLDWIDNHQSLEVWHAPDGTP-GI 110

Query: 852 SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
              I      I I G ID + +    + + ++KT      +          QL++Y   L
Sbjct: 111 ELAIEFELDGIEIRGYIDAVLVLDGEVLVVDWKTGLKPGDD---------FQLAVYALAL 161

Query: 912 KDSYPNKSLVCLLIYVSEPK 931
           K  Y  +    +       K
Sbjct: 162 KQLYGVEITRGVYFMAKTGK 181


>gi|167737950|ref|ZP_02410724.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei 14]
          Length = 323

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 97/292 (33%), Gaps = 9/292 (3%)

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNE 540
           ++       + +       +  + G  +  ++ ++    E      + L E        +
Sbjct: 14  VERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQ 73

Query: 541 QNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF          
Sbjct: 74  PGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLR 133

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      +D+ G  +        +       +   +    E  RL+YV +TRA 
Sbjct: 134 EPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVYVALTRAV 191

Query: 660 DQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            +  +    + ++ + K++ +     +V  +  + +   K    ++   + W A      
Sbjct: 192 YRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPV 251

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                P+           + +  +      +   +   I + S++ +    +
Sbjct: 252 TLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARD 303


>gi|298346778|ref|YP_003719465.1| RecB family exonuclease [Mobiluncus curtisii ATCC 43063]
 gi|298236839|gb|ADI67971.1| RecB family exonuclease [Mobiluncus curtisii ATCC 43063]
          Length = 234

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 25/162 (15%)

Query: 786 IHKLLQVIFTLPEHKR------KNFITSY---------CTKNAKLWPAKEYKNLLLS-IT 829
           +HK+L+ +F LP  +R      +    ++          ++       +E K      I 
Sbjct: 1   MHKVLEDMFDLPPAERQAPTVRETVDRAWEKVTDGAYKLSEVLAQTSEQELKAAARQLID 60

Query: 830 RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHH 888
                             E+ V   ++   K   + G ID++  +    + I +YKT   
Sbjct: 61  AYFSLEDPRRLHPSG--RELGVETVLSSGLK---LRGFIDRVEQAGNGDVRIIDYKTGKA 115

Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEP 930
                      ++ Q+ +Y  + ++ Y        L+++   
Sbjct: 116 PD---MRFTGEYVFQMRMYALLYREQYQVTPKRTQLLFLGGN 154


>gi|212702576|ref|ZP_03310704.1| hypothetical protein DESPIG_00600 [Desulfovibrio piger ATCC 29098]
 gi|212674017|gb|EEB34500.1| hypothetical protein DESPIG_00600 [Desulfovibrio piger ATCC 29098]
          Length = 993

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/392 (13%), Positives = 116/392 (29%), Gaps = 43/392 (10%)

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
           E  +  L  E+     L  L  +L Q         +     V+++ +  ++ L+   +F+
Sbjct: 512 ELQHNALSGEEMLPRLLHGLARQLLQQQRIPF--EADPLGGVQVLGMLESRLLQFDRIFI 569

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           VD    V      +   +  SL    G+P    + ++ ++ +  L    ++         
Sbjct: 570 VDATDDVLPGAPGQDPLLPDSLRRILGLPDARRRERAASHTLYRLCACAREVR------- 622

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
            Y   ++    L+          KK+  R    ++             + T +I K    
Sbjct: 623 FYWQESQGRSGLMDS--------KKARSRFVEQLI---------WAHEQRTGAILKPGTP 665

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
               +T      P       +    +  +   L +PI     + Y+  P +   K     
Sbjct: 666 PLAVATCAVAPMPPRELSLKRNQALQDAMRDFLAAPISPTALDTYLRCPLSFVWKHLCRF 725

Query: 771 ESLLS---DNQTFNRGLIIHKLLQVI-----FTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
             +      +     G ++H +LQ +              +          ++       
Sbjct: 726 RPVQEVNEKDDPAEVGSVLHDVLQQLYRPYRGKPVGAGTFDMAVMRAELQHQIEKHDLRT 785

Query: 823 NLLLSITRLLENP---MMTTAMSCDSYS-----EVSVSGKINCPKKDIIISGRIDQISIS 874
            L      +        +   +     +     E  ++  I C  ++    GR+D++   
Sbjct: 786 QLPPDSLMMFSMAAPRRLEEYLCNQPAATILELEYPLTQVIRCNGREYTFKGRLDRLDRR 845

Query: 875 QQNIFIFEYKTHHHV-PQEIEHIPYTHIAQLS 905
           +  + I +YKT     P            Q++
Sbjct: 846 EDGLCIVDYKTGIINSPAGALWDDEALFLQMA 877


>gi|227486419|ref|ZP_03916735.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235600|gb|EEI85615.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 1115

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 96/720 (13%), Positives = 201/720 (27%), Gaps = 134/720 (18%)

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQE--SWTSYFDSLPQESSASILARRIAYTISNMIGT 359
                TV L    ++    +  P ++       ++S+  +S  + +A  I   I      
Sbjct: 264 PSNPKTVDLDHLRINFETYRPAPFEKNPENIKIYESISTKSEVTNMALLINKIIK----- 318

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                      I+ KD+ V +    D            + Y+I +  + R  + D+  IK
Sbjct: 319 -------TNPDIRYKDMAVYL---TDPDQYENELIKTFSRYEIPIFLDKRRKMADNHIIK 368

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD---IFKICTQRHETETVYEYIQKFANC 476
             +AL R  ++         +L S L   S+ D   +    T R    +++E  + FA  
Sbjct: 369 TFLALLRLKVNNFRQEDLFYILNSKLIGISDKDANALINFLTYRKIKGSMFENDKYFAMD 428

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFF----TLILGAKKGRQQ------------FISR 520
                ++++    +   IA+    +D        IL   KG  +            F   
Sbjct: 429 EDFYEKNLVNDPKKDEKIAKKREEYDHVNLVRAKILHLTKGLDKKNMTVKDLATKIFKMI 488

Query: 521 FGNEVIDVLDEFLNFTLRNEQNSYSSLQE----LISELEQYPPTIKRAHSANHNEVRIMT 576
             +++   ++ F       E       +E        +      +      +    R++T
Sbjct: 489 ADSDIKKSINAF--QAKLLENADLDDYKENEQIWDEFVAILDQLVLLMGDRSLPLSRVVT 546

Query: 577 VHTAKGLES---------PVVFLVDTGSQVFSHKHIKKMHIMPSLND---DPGIPIWIPQ 624
           +  A   +            + + D      S+K I  +  M             +  P 
Sbjct: 547 IVEAVTRDIQIGLIPPSKDHLIVTDFARDRVSNKKINILLGMDDAYFPSQKAKDYLISPD 606

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                      +K   K         LY  ++R+ D+LI     +    K  N+      
Sbjct: 607 EMEELEKAKIDLKLYAKDRDRAELLSLYKIISRS-DKLIFSYALSDKEGKDLNESLVIRD 665

Query: 685 VYDSFHNDERVKKIKLTNS--------------------------INKDEWIAYEWSTHH 718
           +   F   ++   +                                +KD+ IA  +  + 
Sbjct: 666 IRKIFPKLKKNILLDPRAEDAIFARESLKKYTLAVLNKLANKEKITDKDKQIATAFMEYL 725

Query: 719 PENTPLEREETIKQ------------LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
            EN   +  +                L    ++ K L+      ++E    +        
Sbjct: 726 RENQEKDENKLTYDKVKKGLFYTNDKLALADELRKVLYKKHAYSVSEIETYSACPYKHFI 785

Query: 767 KTNLESLLSDN---QTFNRGLIIHKLLQVIFTLPEHKRKNF-----ITSYCTKNAKLWPA 818
              L   +         + G I+HK  + +  L +    +      I     +       
Sbjct: 786 AYGLRPDVEKEFDVDALDIGNIVHKSFEDLSRLIKDMDLDEVDFSEIDKLLDEKFNEGID 845

Query: 819 KEYK-------------------------NLLLSITR-LLENPMMTTAMSCDSYSEVSVS 852
           +                             ++  + R   +      A            
Sbjct: 846 ENLDSTRKDSPKNKYILKNINQAAKRNTRQIVDQLKRGDFKLEYFEQAFDKGG-----FF 900

Query: 853 GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
             +   +++  + GRID+I ++   + + +YKT       +  I      QL IY   + 
Sbjct: 901 DPVYVDEENY-LRGRIDRIDMAGNLVRVIDYKTGSKAF-NLAAILNGKDLQLIIYMIAVS 958


>gi|118367232|ref|XP_001016831.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89298598|gb|EAR96586.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 816

 Score = 71.9 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 48/227 (21%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           K  Q    ++ DE QD + + ++++                   L  +GDE Q+IY F G
Sbjct: 157 KYFQSKKLVVFDEFQDINQLHYDILMLF---------KKVGNSVLVVLGDEAQNIYEFRG 207

Query: 232 AEPKRVLREKRIN----QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
           +  K + +         +K  +N        +L  +FR ++ I    + +          
Sbjct: 208 SNFKYLNQIVEDVNRENKKIYSNEDYNMLEFKLTTNFRCSSKITDFANDIIR-------- 259

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                     ++ +   + + +              P   ++   F+ +          +
Sbjct: 260 --------YFKTIKSNNMISFEDLNSGKEIKKCDIKPSLIAYPKPFNLV----------Q 301

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            I   I  +I         K      KD  ++         +    +
Sbjct: 302 DIIIQIRELI---------KNNSFSYKDFAIISPTTFTLFQVELFLQ 339



 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 28/117 (23%)

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               +++ I+T H +KGL+  VVF V     +F     +K+       +           
Sbjct: 367 EYQADKIMILTGHKSKGLQWKVVFEVGMEDNLFPLSFTRKVEDGQDYLN----------- 415

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                              EE  RL YV  TRAS  L I   S+ + ++       +
Sbjct: 416 -----------------KVEESKRLFYVMSTRASQFLYISYISHNNKDQLQYYACRF 455


>gi|306815654|ref|ZP_07449803.1| UvrD/REP helicase [Escherichia coli NC101]
 gi|305851316|gb|EFM51771.1| UvrD/REP helicase [Escherichia coli NC101]
          Length = 541

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 23/184 (12%)

Query: 155 NTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
               +L +   +      I    +HI IDE QD+SL Q ++   +          +    
Sbjct: 157 LALKILNESSAAK---RYIKARYSHIFIDEYQDSSLSQHQLFLKI----------NELGL 203

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD  QSIY F G   K +L      +         F   E+  + R    I    
Sbjct: 204 YSIAVGDVWQSIYEFRGGNSKLLLELVSKTE--------VFKHFEINFNHRCHPSISNYA 255

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
            ++     +   L  D     R R S   +   V +   +    +S     +++      
Sbjct: 256 SRLL--NPSYNLLPTDDIRVFRRRLSGNLKDNAVTISSWISDWLESGEWELEKANQIAIL 313

Query: 335 SLPQ 338
           +  +
Sbjct: 314 ARKE 317


>gi|157311096|ref|YP_001469091.1| gp092 [Lactococcus phage KSY1]
 gi|108861436|gb|ABG21635.1| gp092 [Lactococcus phage KSY1]
          Length = 376

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 58/186 (31%), Gaps = 21/186 (11%)

Query: 755 YILNPSTIDTKGKTNLE--------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
              + S ++T      +             +Q   RG  +H LL+ +             
Sbjct: 2   KPFSVSEVNTYTANPFKHFITYVMGMWPEQSQAAARGTSVHALLEKVSQRFTEDSLEVFN 61

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMS---CDSYSEVSVSGKINCPKK 860
               +      A++Y  +L    +   +P         S    +   +V    K+  P  
Sbjct: 62  EIAEELELDKKAEDYVTVL-RYLKYYSHPDTSIFKNLYSLPWANDCVKVETELKVIVPMD 120

Query: 861 DIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
                G ID +   +   + +++YKT  + P  I++    +    ++Y   ++       
Sbjct: 121 GFTFKGFIDLVVHHEDGSVTLYDYKTLSNKPSRIDYEMD-YQG--NMYTIAMQKM--GYK 175

Query: 920 LVCLLI 925
           +   + 
Sbjct: 176 VREFIF 181


>gi|323704722|ref|ZP_08116300.1| hypothetical protein ThexyDRAFT_0591 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536184|gb|EGB25957.1| hypothetical protein ThexyDRAFT_0591 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1036

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 96/863 (11%), Positives = 239/863 (27%), Gaps = 167/863 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   YEE K KN ++D +D+ +         +            I  ++ID   +  
Sbjct: 152 LAEIYIDYEEYKNKNGLIDVDDISVKAFQYANSSN--------YFSRIGIVVIDGFINLD 203

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +  +++R +  +                 GD    IY          +  K    +   
Sbjct: 204 GVNMQLLRKMALN-----------------GDYD--IY--------VNIPFKNEYNEIFI 236

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
             G       L + FR              + E  +   + S      +    G+     
Sbjct: 237 KNG--IVKDLLEIGFR--------------LNEMMEESIDGSNAEKVSKYLYSGK----- 275

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                      +     +      +S   E      AR I   I                
Sbjct: 276 -----------EIIKSVDGTLMILNSPSIEHEVREAARIIKKKIV-------------FE 311

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            ++ ++I V V+   D          + ++  I +  ND   L   +   D+ +L  + +
Sbjct: 312 KVKPENIAVFVKNIDDYR---ESIIDIFDEMGIPLRFNDGKKLISMMIAGDIYSLITYKI 368

Query: 430 SQEDDLSFVCMLKS----PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           +  D  SF  ++KS    P       +          +    E++    +    + +  I
Sbjct: 369 N-HDFKSFDSIMKSKYLMPNEIIDVYNKASKLIDVSHSNYEEEFLSALNDDEFERLKKYI 427

Query: 486 KYIHELIHIAQFCSPHDFFTLILG------------------AKKGRQQFISRFGNEVI- 526
             + +        +  +F   IL                      GR    S    E + 
Sbjct: 428 NMLVDFKEKQYKDT-SEFLDSILNVIEMLKIDSNIMSLYESGIIDGRNFVYSLKALEAMK 486

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---SANHNEVRIMTVHTAKGL 583
            +L   +       + S   ++ +  +L      +       + +   V+++    A+G 
Sbjct: 487 QILKNVMELKRLYGETSSDDIETIQEDL--LDMMVNCDIMIKNLDIEGVKVVNPDLARGQ 544

Query: 584 ESPVVFLVDTGSQVFS--HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK- 640
           +   VF++      F           +               ++             +  
Sbjct: 545 KYDAVFILGANEGDFPTTSSINPIFDLQDEAYLGNSHLYVFSRNFEIEREKIRFNSCIAS 604

Query: 641 ---------KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
                    ++T EE N+++        + L                +  +    ++  +
Sbjct: 605 SLGDVYISYRTTDEEGNKMIKSPFVYEIESLFDEISLGKIVASIVYMKDRFTYNLNNLSS 664

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTP-LEREETIKQLMDEQKIPKKLFSPIKND 750
           ++ +      +  +  +        +  +    ++   ++++         +    I  +
Sbjct: 665 EDEIMYFLANSKCDDVDLNILSGRENLTKTYQHIKYLSSLERKRMTSNEINEYTGKIHRE 724

Query: 751 INE----PYILNPSTIDTKGKTNLESLLS-------DNQTFNR----GLIIHKLL----- 790
            N        L+ S++++         +         +++       G   H++L     
Sbjct: 725 ENLKILDEIHLSASSLNSYVACPFRFFVETLLDIKVSDESIEFKKNMGSTYHEILMKYYS 784

Query: 791 QV--IFTLPEHKRKNFITSYCTKNA----KLWPAKEYKNLLLSITRLLENPMMTTA-MSC 843
           +   ++ + E + K+ I   C         +   K  K +  +I +L+ + +        
Sbjct: 785 ENKDLYDVNEERLKDVIDKICENLDGIKNDIILEKFKKEMYDTIFKLIVDDISNRLNYYK 844

Query: 844 DSYSE-VSVSG----KINCPKKDIIISGRIDQISISQ-------QNIFIFEYKTHHHVPQ 891
            + +E + +      +I+         G+ID+I + +           I++YK       
Sbjct: 845 KTGAELIPLMLEKKFEIDSHYGGYRFYGKIDRIDLERSIDGNLTGKYLIYDYKLGAV--G 902

Query: 892 EIEHIPYTHIAQLSIYEKILKDS 914
            +         QL  Y    ++ 
Sbjct: 903 GLRQCIDGLDFQLPTYYMAAEEI 925


>gi|221308900|ref|ZP_03590747.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313224|ref|ZP_03595029.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318147|ref|ZP_03599441.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221322422|ref|ZP_03603716.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|255767242|ref|NP_388943.2| ATP-dependent deoxyribonuclease subunit B [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|239938591|sp|P23477|ADDB_BACSU RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|225184869|emb|CAB12902.2| ATP-dependent deoxyribonuclease (subunit B) [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 1166

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 65/726 (8%), Positives = 184/726 (25%), Gaps = 158/726 (21%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR--IAYTISNMIGTDTIFSNGKKR 369
            ++              +    ++L    +A+  A    IA  I  ++           +
Sbjct: 288 PELAHLEAQYEARPAIPYAEKQEALTVMQAANRRAELEGIAREIHALVRE---------K 338

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + KD+ +L R          + + +  DY+I    + +  + +H  I+ + +    + 
Sbjct: 339 GYRYKDVAILAR---QPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSLDVLK 395

Query: 430 SQEDDLSFVCMLKSPLF---------------------------NFSEDDIFKICTQRHE 462
                 +    +K+ L                                    +   +R  
Sbjct: 396 GNWRYEAVFRCVKTELLFPLNEPKAKVREQVDQLENYCIAYGIKGDRWTKGDRFQYRRFV 455

Query: 463 TETVYEYIQKFANCGISKFQHVIKYI--------HELIHIAQFCSPHDFFTLILGAKKGR 514
           +               +       +I          +          +     L      
Sbjct: 456 SLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQLQKRMKKAKTVQEKAEALYRYLEETDVP 515

Query: 515 QQF--------------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            +                ++   +  D + + L   +    +   SL      +E    +
Sbjct: 516 LKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEISLDLFQQMIEAGAES 575

Query: 561 IKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
           +  +      ++V +  +  ++   +   F++     V   +  +   +     +     
Sbjct: 576 LTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTI 635

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                S               +    + + L+Y+  +  SD+L +      +  K     
Sbjct: 636 GVELSSGG-------------RERLLDEHFLIYMAFSSPSDRLYVSYPIADAEGKTLLPS 682

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                + + F + +          ++ +E + Y  +    ++    +     +  D   +
Sbjct: 683 MIVKRLEELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQSFTASQLRLWTREYDISDV 742

Query: 740 PKKL------------------------------FSPIKNDINEPYILNPSTIDTKGKTN 769
                                              S  +    E    + S ++T     
Sbjct: 743 WWSTYNVLMSEQDRLQSKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETFNACP 802

Query: 770 L-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKL 815
                       E      +  + G + H  L++I           ++     C   +  
Sbjct: 803 FSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLREQKLDWRDLTKEQCELFSYD 862

Query: 816 WPAKEYKNLLLSITRLLEN--------------PMMTTAMSCDSYSE--VSVSGKINCPK 859
              +    L   I   L +                ++  +S  + +   V +  ++    
Sbjct: 863 AVERLAPKLQKEIL--LSSNRHYYVKEKLQKIVTRVSGILSEHAKASGFVPIGLELGFGG 920

Query: 860 KDII--------------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHI 901
           K  +              + GRID++  ++ +    + I +YK+      ++  + Y   
Sbjct: 921 KGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS-DKGLDLAEVYYGLA 979

Query: 902 AQLSIY 907
            Q+  Y
Sbjct: 980 LQMLTY 985


>gi|302384282|ref|YP_003820105.1| double-strand break repair protein AddB [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194910|gb|ADL02482.1| double-strand break repair protein AddB [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 1013

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 64/666 (9%), Positives = 168/666 (25%), Gaps = 94/666 (14%)

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
            A+GL+         R +        ++        ++  +    +      S+    + 
Sbjct: 296 EARGLARQRLIHEALRPAEATADWREEIRGLRGRAAEAGQSADPIALGLQGLSVVTTRTE 355

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  IA     ++  +++   G+   +   D+ +  R                  + +
Sbjct: 356 EEAAATIA-----LMMRESLEMPGRTCALVTPDLALGRR-----------VAARLERWGV 399

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL----------------- 445
               +    L        +    R++       + + ++K  L                 
Sbjct: 400 VADSSSGTGLGQMPVGVLVDLCVRWMADPLAPQTALALIKHELTTLPEATSDAVVELEKV 459

Query: 446 --FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS---- 499
                   D  ++  +  +        Q  ++  + +          L  ++   +    
Sbjct: 460 AFRGPRTRDWTRVEARLTQAGAPRRNGQPPSDWTLGRLAQATALAGRLQALSGTATAPFA 519

Query: 500 ---PHDFFTL----ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
              P D        ++ A  G   +    G     +L + +       + S     EL++
Sbjct: 520 PRAPLDAAARSLTTLIEALAGADVWAGSDGEAAAAMLSQLIEGGASLGEVSPGEFAELVA 579

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            L     T  R   A H  +RI+    A+ + +  + L      V+         +   +
Sbjct: 580 GL--VRDTTVRTGGATHPSLRILGAIEARLVRADRMILAGLEEGVWPRGAPVDPFLSRPM 637

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                +P    +               +        R                       
Sbjct: 638 RKALDLPPPERRVGQTAQDFVQGACAPEAILIHTERR----------------------G 675

Query: 673 EKKSNQRTWYDMVYDSFHND--ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
            + + +  W   +         +  +  ++  +    +   +          P       
Sbjct: 676 GQPAVRSRWLWRLEMLTRGAGVDLDRPTEMQATARALDAPGFGQGGLAKRPAPKPPVARR 735

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
            + +    + + +  P          L P                  +   RG  IHK +
Sbjct: 736 PRTLPVTGVERWVRDPYAVYARYVLNLRPMD----------RPGQSAEALLRGQAIHKAV 785

Query: 791 QVI----FTLPEHKRKNFITSYCTKNAKLWPAKEYKN-----LLLSITRLLEN-PMMTTA 840
           + +      +     ++ I     +  +    ++        L  +  R L        A
Sbjct: 786 ERLTLAWPDVLPEDCEDQIVHLLHEELRHHGFEDAAMAREGPLARNAARWLTAFETRRRA 845

Query: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
              +   E  V+   +       ++ + D+I +S     I ++KT        + +    
Sbjct: 846 QGIEIRVEEEVALTFDADAGPFTVTAKADRIELSSTGAAILDFKTGAAP--SAKQVKSGF 903

Query: 901 IAQLSI 906
             QL++
Sbjct: 904 APQLTL 909


>gi|227500429|ref|ZP_03930491.1| ATP-dependent deoxyribonuclease subunit B [Anaerococcus tetradius
           ATCC 35098]
 gi|227217492|gb|EEI82811.1| ATP-dependent deoxyribonuclease subunit B [Anaerococcus tetradius
           ATCC 35098]
          Length = 1120

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 84/655 (12%), Positives = 195/655 (29%), Gaps = 124/655 (18%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           + +S       IA  I+ ++           +  + +D+ + +    D          + 
Sbjct: 299 ENTSTKSEVINIAKLINYLVKA---------KNYRYRDLAIYI---SDEDEYKNEIIKVF 346

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED------ 451
           N Y + V  + R  L+D+  IK  +A+ R ++           L+S LF+FSED      
Sbjct: 347 NRYDLPVFMDQRRKLSDNHIIKTFLAILRLVIYNFQRQDMNYFLRSGLFSFSEDFEDKVI 406

Query: 452 --DIFKICTQRHETETVYEYIQKFANCGISKF-------------------------QHV 484
               F    +      + +   +F      K                            +
Sbjct: 407 ILQNFIKTRKIKGKTFLDDKYFEFDQEFYEKIYENDPQSEAKLSEKTREYEIVNELRTRI 466

Query: 485 IKYIHELIH----------IAQFCSPHDF--------FTLILGAKKGRQQFISRFGNEVI 526
           +K +  L+            A F   +D         +  IL A      +         
Sbjct: 467 LKLLAPLLEKRQGPSKDLCQAIFEVIYDEDIRRGIDKYQAILKASGRLDDYKENEQVWDK 526

Query: 527 --DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGL 583
             ++L+E +    + E     SL ++ S +E     I       + + + + +   A   
Sbjct: 527 FVEILEELVELMGQREN----SLGKIYSLIEATARDINVGIIPPSKDHIEVTSFARAAIA 582

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
              + F +      F  K  + + +  +  D         +    +    + +   K  T
Sbjct: 583 NRRINFALGLNDVFFPSKSGEDLIVGKNEKDKLRDLGIDLKVFDEDLEEREKLNLYKLIT 642

Query: 644 QEEYNRLLYVGMTRASDQL----IICKHSNTSNEKKSNQRTW------------YDMVYD 687
             +     Y    R S+ +    ++    N   +   N  +             Y +V  
Sbjct: 643 ISDKIFFSYSLANRKSEAINKSIVLSGIMNIFKDDSLNLSSMIYGSRLGLSIEKYSLVAL 702

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
             +  + ++K+     ++ D+    +    + ++      + IK+ ++     ++L   +
Sbjct: 703 ENYALKNLRKMIGKEKVSVDDKAISKAMISYLKDRDS--YDLIKKALNFTNDKERLRKDL 760

Query: 748 KNDINEPYILNPSTIDTKGKTNLE-----------SLLSDNQTFNRGLIIHKLLQVIFTL 796
              + +    N S I+   +   +               D      G I+HKL + +   
Sbjct: 761 TEKLYKKNHFNVSEIENYSRCPYKYFVNYGLRPKIEESYDVDHMEVGNIVHKLFEDLSHK 820

Query: 797 PEHKR-----KNFITSYCTKNAKLWPAKEYKNLLLS-------ITRLL-----ENPMMTT 839
            +++      +  +     +N      +               +  +L      +  +  
Sbjct: 821 LKNEDIKTISQEGLDELLVENFTKATEENLDKTRRKDAKNKFILNNVLTSTRRNSKKLLD 880

Query: 840 AMSCDSYSEVSVSGKINCP--------KKDIIISGRIDQISISQQNIFIFEYKTH 886
            +S   +   +V                 +  + GRID+I  +   + I +YKT 
Sbjct: 881 QLSQGDFEIYAVEEDFGYGKDIPQVFVDDENYLRGRIDRIDKAGNFVRIIDYKTG 935


>gi|198282435|ref|YP_002218756.1| hypothetical protein Lferr_0295 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198246956|gb|ACH82549.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 629

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 86/596 (14%), Positives = 180/596 (30%), Gaps = 102/596 (17%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD--EFIKIRDRFNTYKMFKSTLASLTLA 130
           F T   +     + Q+I     ++     ++Q+      + D     +     ++     
Sbjct: 103 FQTDIASWVDRRVDQKIADIEGEIAAFTNRTQEKTRVKAVADIERYREQKLKIVSVDRFT 162

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
             + + Y++      +L  +D+I  + +L++ + + A +   + Q    + +DE QDT+ 
Sbjct: 163 YGVGSDYQK-----GILGHDDVIRLSTELIRSQPLIATV---VGQRFPFVFVDESQDTAP 214

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
              E +++++E          S   L  +GD  Q IY+      +               
Sbjct: 215 DVVESLKAISE-------ALGSKFCLGFIGDPMQKIYTTGAGAIE--------------- 252

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
               +  IE P +FR    +L V++ +        GL++    T      R    GT +L
Sbjct: 253 PLPGWKRIEKPENFRCPVAVLNVINNI---RAGGDGLTQTGGKTEVVGEERKPVQGTAKL 309

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
              V     S+       W +   + P   S    A      I++ +    +        
Sbjct: 310 L-VVPKDDRSRRLAAARQWLADQHADPLWLSDEPEADVKVLVIAHRMAASRLGFGDLYGA 368

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
            + K    L     D    +         + + +V  +   + D   + +L  L RF  S
Sbjct: 369 FRDKTSEGLKDGFDDGSHWS---IQPFLKFLMPLVLANG--VGDQFEVMNL--LRRFAPS 421

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
            + + +    + + L +                + + E     +         V + +  
Sbjct: 422 LQREYARANAIPTILKDLD-----------ARVKALAEAYGATSTI------AVFEALKL 464

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
           L               IL A     Q +    +     L + L             L   
Sbjct: 465 LRDGMM----FRLDDRILTAMAEYNQAVPPTDSGDAAALQKLL-------HTPMKELWGY 513

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF-LVDTGSQVFSHKHIKKMHIM 609
            + +E+  P                     KG E   V  ++D      +     K+  +
Sbjct: 514 RTYIEEQSPFETHQ--------------GVKGAEFSRVLTVLDDEEGSHNQFSYGKLFGI 559

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              ++     +                +   ++T +   RLLYV  +RA   L + 
Sbjct: 560 TPPSNTDLTNL----------------REGNETTFDRTRRLLYVCCSRAGKDLAVV 599


>gi|218896098|ref|YP_002444509.1| helicase, UvrD/Rep family [Bacillus cereus G9842]
 gi|218546034|gb|ACK98428.1| helicase, UvrD/Rep family [Bacillus cereus G9842]
          Length = 778

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 36/217 (16%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  S+RST  I+      F+     +G +  +      + +        +L E + ++
Sbjct: 602 INLTRSYRSTKPIIE-----FTRALVPEGKNIHAFERDGEKPTVTKIADYSELHEHITTK 656

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              +   Q  +  +       ES+A+  A R    I 
Sbjct: 657 VT-ELQKQNHNTIAIICKSATESAAAYEALRHIENIK 692


>gi|328552684|gb|AEB23176.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
           amyloliquefaciens TA208]
          Length = 1166

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 74/752 (9%), Positives = 202/752 (26%), Gaps = 156/752 (20%)

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           + A+ L+ D +    H + R      V     + SQ+D +           F  +  ++ 
Sbjct: 264 QTAKELNADISCKELHGTKRHQH---VPELACIESQYDVRPAAVYTGGQEAFTVIQAQNR 320

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            + L   IA  I +++           R  + +D+ +L+R          L + +  DY 
Sbjct: 321 RAEL-EGIAREIQSLVRD---------RGYRYRDMAILIR---QPEDYKDLLKEVFADYG 367

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-FNFSE---------D 451
           +    + +  +  H  I+ + +    +       +     K+ L F   +         D
Sbjct: 368 LPYFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIREQVD 427

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQH-------------------------VIK 486
            +   C         +   ++F                                   +I+
Sbjct: 428 QLENYCIAYGIKGERWTNGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETREWMAEPLIR 487

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQF--------------ISRFGNEVIDVLDEF 532
             + L       S  +   L L       +                ++   +  D + + 
Sbjct: 488 LQNRLKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQQAEEAGNMIEAQQHGQAWDAVIQL 547

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
           L            SL      LE    ++  +      ++V +  +  ++   +   F++
Sbjct: 548 LEEFTGMMGEDEMSLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSCTFVI 607

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                V   +  +   +     +          S               +    + + L+
Sbjct: 608 GANDGVLPARPDENGVLSDDDREWLKAVGVELSS-------------AGRERLLDEHFLI 654

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           Y+ ++  SD+L +      +  K        + + + F + +          ++++E + 
Sbjct: 655 YMALSSPSDRLYVTYPIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEEEQLQ 714

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY---------------- 755
           Y  +    +     +     +  +   +    ++ +  + +                   
Sbjct: 715 YLVNKQVAQTYTASQLRLWTREYEISDVWWSAYNVLMKEPDHERAKKLFSSLFFRNEAKR 774

Query: 756 --------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLL 790
                           + S ++                  E      +  + G + H  L
Sbjct: 775 LERPVSRQLYGEHIKGSVSRMEAFNACQFSHFASHGLQLKERQFFKLEAPDIGQLFHSSL 834

Query: 791 QVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSIT-----RLLENPMMTT--- 839
           ++I         + ++     C   +     +    L   I             +     
Sbjct: 835 KLISDRLREQKLEWRDLTKDQCRNFSYDAVERLAPRLQKEILLSSNRHFYVKEKLQKIVT 894

Query: 840 ----AMSCDSYSE--VSVSGKINCPKKDII--------------ISGRIDQISISQQN-- 877
                +S  + +   V +  ++       +              + GRID++  ++ +  
Sbjct: 895 RVSGILSEHAKASGFVPIGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAESSKG 954

Query: 878 --IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
             + I +YK+      ++  + Y    Q+  Y
Sbjct: 955 LLLRIVDYKSS-DKGLDLAEVYYGLALQMLTY 985


>gi|306833180|ref|ZP_07466310.1| ATP-dependent nuclease subunit B [Streptococcus bovis ATCC 700338]
 gi|304424754|gb|EFM27890.1| ATP-dependent nuclease subunit B [Streptococcus bovis ATCC 700338]
          Length = 1080

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 83/732 (11%), Positives = 205/732 (28%), Gaps = 118/732 (16%)

Query: 264 FR---STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
           +R   ST +I                       + +       ++  +   +   +  D 
Sbjct: 227 YRAAFSTGNIYQASLDFLRGLAAKFHAQPQYVESSQKSHEAFSKLSKLFEAKHDFTSSDV 286

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                 +   + +D + Q+     +A+ I + +               +  + KDILVL+
Sbjct: 287 TLTADDKKHYAIWDVINQKEEVEHVAKAIRHKL--------------YQGYRYKDILVLL 332

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
               D          + + Y I         ++DH  +  + +L R    +      V +
Sbjct: 333 ---GDVDSYRLQIGKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNL 389

Query: 441 LKSPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           LK+ L+  F ++D+          +   +         + K +  + +++ +        
Sbjct: 390 LKTGLYGNFKQEDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPL 449

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYS------------- 545
              F           ++ ++      + D L+  +     NEQ  +              
Sbjct: 450 LALFKAQKQRGSSLLEKLMTFLHAIHLPDNLEGMVATFSENEQEKHEQVWRTFTGILTQF 509

Query: 546 ---------SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGS 595
                    SL + +S +       +        + V + +    +   +  VF +    
Sbjct: 510 QTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNKFVFALGMTQ 569

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             F         I             I +S   N     + +   K        L     
Sbjct: 570 AHFPKIAQNSSLISDEE------RAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSAT 623

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
               ++L++      +  + +      ++         + +    T++ +   + A    
Sbjct: 624 ----EELVLSLPQIANEAEDTESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSR 679

Query: 716 THHPENTPLE--------------------REETIKQLMDEQKIPKKLFSP--------I 747
                   +E                    R++   + ++   I   + +          
Sbjct: 680 VIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAEGIELPLIKDNMQTKTVSADVIEA 739

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVI--- 793
           +   +EP +L+ S + T      +  L                 N G  +H++ +++   
Sbjct: 740 RFPSDEPILLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKD 799

Query: 794 -------FTLPEHKRKNFITS-----YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
                    L +  +   +       Y       +     +++  S   +L +       
Sbjct: 800 DSNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTATILRDDAQIQVE 859

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTH 900
           S     E +    I      + I G ID++   S  ++ I +YK+  +   +I+      
Sbjct: 860 SE----EETFELMIA---NSVRIRGIIDRVDRLSDGSLGIVDYKSSRNTF-DIQKFYNGL 911

Query: 901 IAQLSIYEKILK 912
             QL  Y + L+
Sbjct: 912 SPQLVTYVQALR 923


>gi|319957660|ref|YP_004168923.1| hypothetical protein Nitsa_1931 [Nitratifractor salsuginis DSM
           16511]
 gi|319420064|gb|ADV47174.1| hypothetical protein Nitsa_1931 [Nitratifractor salsuginis DSM
           16511]
          Length = 787

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/400 (11%), Positives = 107/400 (26%), Gaps = 59/400 (14%)

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
            + L E  +   +       SL+E +  L        R       +V +M V   +G+  
Sbjct: 373 EEPLWELRHRFQKLNAGRTLSLKEWL-FLWLEEVGALRLDDVRGGKVTVMGVLETRGVAF 431

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V +VD    V      K   +   +    G+P    +   + +  + L++  K++   
Sbjct: 432 DGVVIVDFNEGVVPASSGKDRFLDSRVRHFAGLPDRRDREALQKHYYARLLEGAKEA--- 488

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
                                                 ++  +   +    +      + 
Sbjct: 489 --------------------------------------VILYATGENRLPTRFLYELGLE 510

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
           +   +A      +  +     +        +    +   S ++  +          I+  
Sbjct: 511 EGREVAAPRKLLYDHSPLPAADADPVVEAFDPTQMRWSASRLRTWLECKRRFYYRYIEGL 570

Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQ-------VIFTLPEHKRKNFITSYCTKNAKLWPA 818
            +   E L         GL +H++L+             +  R+  I +           
Sbjct: 571 EEKESEELNE-------GLFLHRVLEGLFRERDHYDDPEQMSREFAILAARELERHGSAG 623

Query: 819 KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNI 878
           +                      +     E S+   +      +   GRID+I    +  
Sbjct: 624 RYILAYWKRKLESYFREEAKR-FTQGWRVE-SIETAVEGEIDGLRFGGRIDRIDRLGEAR 681

Query: 879 FIFEYKTHHHVPQEIEHIPYTHI-AQLSIYEKILKDSYPN 917
              +YK+        +         Q+SIY+ +L+  +P 
Sbjct: 682 LALDYKSGSIKEANRKSNLDKLTDFQMSIYDLLLRSRFPE 721


>gi|304320183|ref|YP_003853826.1| hypothetical protein PB2503_03042 [Parvularcula bermudensis
           HTCC2503]
 gi|303299086|gb|ADM08685.1| hypothetical protein PB2503_03042 [Parvularcula bermudensis
           HTCC2503]
          Length = 1015

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/516 (9%), Positives = 136/516 (26%), Gaps = 59/516 (11%)

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                + I +  +    L        +     ++ + +D ++   ++   LF        
Sbjct: 402 AKLRQWDIRLDDSGGTPLYGAYRGTYIRQWAHWLGAPDDPVALAALVAHGLFLRGLTRSD 461

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQ---------HVIKYIHE-LIHIAQFCSPHDFF 504
           K    R     +     +       +            +++ +   L       + H+  
Sbjct: 462 KERLARRVDRRLRGMRPRDWQDTQRRLAGEGPSPLETELLQDLDAALRAFQAATTQHERL 521

Query: 505 TLILGAKKGRQQFISR----FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
             ++       +        + ++  + L   L+  ++             S  E    +
Sbjct: 522 RALIEIADRFARSADGDQLLWQDQDGEALAAQLSAMMQTAFLPDCPPAAFASLFEALLGS 581

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                   H  + ++ +  A+   +  V L       +         +  ++    G+P 
Sbjct: 582 AVIRTYGTHPRLTVLGLVEARLQSADRVILAGLTEGTWPKLTTADPFLPHNVRLALGLPT 641

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                   +  V             E                +I   S  S+   +    
Sbjct: 642 H-------DAEVGRSALDFVDHALGEE---------------VILIRSEKSDRGPALPSR 679

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI--KQLMDEQK 738
           W   +Y+     ++ +   +T  +          ++  P   P+ R         +    
Sbjct: 680 WLTRLYNLIEAAKQTEATDITGRLRGWVGALRHPASVDPALPPMPRPAAALLPARLSVSD 739

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
           I + +  P          L P          L+ L  +     RG + H + + +  +  
Sbjct: 740 IGQLIRDPYSVYARRLLRLFP----------LDPLAQEPAERERGTLFHAVYERLAKVAP 789

Query: 799 HK--RKNFITSYCTKNAKLWPAKEYKNLLLS-------ITRLLENPMMTTAMSCDSYSEV 849
            +  ++ F  +            E  +L             ++         +  +++E+
Sbjct: 790 DRVTQEVFAHALAETIDDCLYPSECHDLYAMMGQRAGKAFSVISQTQRRD-GATATFAEI 848

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYK 884
                +    + I + GR D+I +       I +YK
Sbjct: 849 EGELTVMAGGRSIDLYGRADRIDLYPDGTYTIIDYK 884


>gi|254228202|ref|ZP_04921631.1| Superfamily I DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262394061|ref|YP_003285915.1| DNA helicase [Vibrio sp. Ex25]
 gi|151939275|gb|EDN58104.1| Superfamily I DNA and RNA helicases [Vibrio sp. Ex25]
 gi|262337655|gb|ACY51450.1| DNA helicase [Vibrio sp. Ex25]
          Length = 634

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 66/557 (11%), Positives = 147/557 (26%), Gaps = 75/557 (13%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y   K  N ++  + +I+    + +K +    I   +      I +DE QDT  I  
Sbjct: 137 YKEY--VKIANGIISHDQVIVLAAKMFEKYERLCSI---VKDRYPFIFVDEYQDTDPIVV 191

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           +++                P  +   GD  QSIY     +     + +R           
Sbjct: 192 KIL-------LEYMEKSERPNVVGFFGDSMQSIYDGSVGDLDIYTKSER----------P 234

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
               +    + R+   ++ + +K+       +        +    +  + + G V     
Sbjct: 235 IVYEVFKTQNRRNPRKVICLANKI-------RTDGLKQQPSDDKYAPNMDEAGEV----- 282

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                      + +   S  +SL             A ++  +     +  N        
Sbjct: 283 --------KQGEIKFLYSTSNSLEAVRQHLGWDFNCAESVKEL----NLTHNLIANKANF 330

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +++ +  K K    +    R    + +     + +              +   + +   
Sbjct: 331 PELMRIYDKDKILEYLRTKVRKALVETEPEYDSSGKTF----------AQVLEHVGNPNP 380

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRH---ETETVYEYIQKFANCGISKFQHVIKYIHE 490
             +    + + L  F                + + + +  + +         +    I  
Sbjct: 381 TPTQQAYIDNNLKYFEIAKSLPYDHISKLYVDKDQLLDDKKNYVGDDSKPSSNRDDLIKH 440

Query: 491 LIHIAQFCSPHD--FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
           L  I      +D   F   + A       +          L+  +      E  S   + 
Sbjct: 441 LFKIENCIRLYDSKKFNQFIKATDYSIISVKDKVK-----LNAAIQDFKLGEDISIGKVI 495

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF--LVDTGSQVFSHKHIKKM 606
           EL   L       K     +        V   K  E   VF  L    +    HK     
Sbjct: 496 ELAHNLGLVIKDDKLDKFISDRHYVYTQVCDVKYQEFRNVFNYLEGFLTFSTQHKTKGSE 555

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                +  D G               +D ++   +        + YV  TRA ++L +  
Sbjct: 556 FSNVLVVLDNGQWNQYNFKYLFEKNGTDSVRQRSEK-------IFYVCCTRAKEKLAVFF 608

Query: 667 HSNTSNEKKSNQRTWYD 683
            + T    ++    + +
Sbjct: 609 PNPTPKTIETALEWFGE 625


>gi|15894313|ref|NP_347662.1| superfamily I DNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|15023937|gb|AAK79002.1|AE007618_5 Superfamily I DNA helicase [Clostridium acetobutylicum ATCC 824]
 gi|325508441|gb|ADZ20077.1| Superfamily I DNA helicase [Clostridium acetobutylicum EA 2018]
          Length = 763

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 33/185 (17%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           ++  V+D +DL               +          HI+IDE QD S+ Q+  +++L  
Sbjct: 504 REKKVIDSDDLAAMLYIKFNIEGNDKF-------NFKHIIIDEAQDYSIFQFSALKNLCS 556

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                        +   VGD  Q IY + G     +     IN+    +    F+ + L 
Sbjct: 557 -----------SNSFTIVGDLGQGIYYYKG-----INDWASINKNVFED---NFNYVALS 597

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            S+RST +I+   ++V           +      +       +   ++          + 
Sbjct: 598 QSYRSTVEIIEFANEVLK-------KQDIKLEPAKPVLRHGDKPEVIEFATNKEFVERAD 650

Query: 322 CNPQQ 326
              ++
Sbjct: 651 EIVER 655


>gi|295401124|ref|ZP_06811098.1| ATP-dependent nuclease subunit B [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|294976917|gb|EFG52521.1| ATP-dependent nuclease subunit B [Geobacillus thermoglucosidasius
            C56-YS93]
          Length = 1172

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 78/725 (10%), Positives = 194/725 (26%), Gaps = 162/725 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            + ++       IA  I  ++  +           + +DI ++VR  +D      L + + 
Sbjct: 320  EAANRRAEVEAIAREIVRLVRDE---------GYRYRDIALIVRNTEDYR---DLVKTIF 367

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            +D+ I    +++  +  H  I+ L A    I S+    S    +K+ L     +D   + 
Sbjct: 368  SDFHIPYFMDEKESMHHHPLIELLRASMEIITSRWRYESVFRAIKTDLLFPVGEDTATLR 427

Query: 458  TQRHETETVYEYI----------------------------QKFANCGISKFQHVIKYI- 488
                  E                                           K       I 
Sbjct: 428  EAMDRLENYVLAYGIKGEKWTNGERWTYRRYQALEGLSVPQTDEEKQYEEKLNQWRDMIA 487

Query: 489  -------HELIHIAQFCSPHDFFTLILGAKKGRQQFI--------------SRFGNEVID 527
                     +       S  +   L L   +  ++                +R   +V +
Sbjct: 488  APLSKLERRMRRAKDGRSLCEAIYLFLEELQIPRKLEKMSKEAEEQGRLMEARQHEQVWN 547

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESP 586
             + +  N  +    +    L E    +E     ++ +      ++V I  +  ++ ++  
Sbjct: 548  AVIDLFNQYVDMLGSEPVPLAEFAKIIETGLDRLEFSLVPPAIDQVIIAQLDRSRLIDVK 607

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
              F+V     V   K  +   +  +  +             R  +  +            
Sbjct: 608  CAFIVGVNEGVIPAKAKEDGLLAETEREILQQFGTRVAPGGREQLFYEPFFI-------- 659

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                 Y+ +T  S++L +         K  +       + D F N ++            
Sbjct: 660  -----YLALTCPSERLYVTYPLANEEGKALSPSLIIKQLADLFPNLQKHVCGNDPLDAEH 714

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY----------- 755
             E  A+           + + +  K+      +   +++   +D                
Sbjct: 715  AEQQAFITVPRATLTYLVAQLQAWKRHYSIAPLWWDVYNFYASDPQWRKQARKAIAGLFY 774

Query: 756  --------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGL 784
                                  + S ++   K              E  +      + G 
Sbjct: 775  TNAATPLKKEISKRLYGKKIQASVSRMEQFQKCPFSHFVSHGLRLKERDVFRLDAPDIGQ 834

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYC-TKNAKLWPAKEYKNLLLSITR--LLENPMMTTAM 841
            + H  L++I       + ++   Y   +  +   A+  + +   I +  LL +       
Sbjct: 835  LFHYALKIISDRLREAKIDW--RYLSKQQCEQLSAEAVEQIAPLIQQQVLLSSNRYHYMK 892

Query: 842  SC---------DSYSE-------VSVSGKINCPKKDII--------------ISGRIDQI 871
                       +  SE       V +  ++       +              + GRID++
Sbjct: 893  RKLQNVVARTTNVLSEHAKASGFVPIGLELEFGPNGALPPLTFRLPDGTVMELVGRIDRV 952

Query: 872  SISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCL 923
              ++ +    + + +YK+       +  + Y    Q+  Y  I+    +     ++    
Sbjct: 953  DKAESSRGVLLRVIDYKSSAKT-LNLAEVYYGLALQILTYLDIVLTYAEQLVGKEAFPAG 1011

Query: 924  LIYVS 928
            ++Y  
Sbjct: 1012 ILYFH 1016


>gi|218296132|ref|ZP_03496901.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
 gi|218243509|gb|EED10038.1| UvrD/REP helicase [Thermus aquaticus Y51MC23]
          Length = 542

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 83/288 (28%), Gaps = 44/288 (15%)

Query: 13  YELIYKDLWPLPY-----FQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER-F 66
            E + +   P        F  +   ++ S          L    +L   +  +       
Sbjct: 28  VERLLRSGVPGEEIAVCAFSRAAFREFASRLAGQVPEENLGTIHSLAYRAIGRPPLALTK 87

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF--IKIRDRFNTYKMFKSTL 124
             LS +      T +             D+ +  +         K+ DR    +   + +
Sbjct: 88  DALSDWNRRVPDTWRVTPRVDGRGADLLDVMDPYEDEDSRPPGDKLYDRVAYLRNTLAPM 147

Query: 125 ASLTLAKY-LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
           A+ +  +      ++       ++DF  ++      L K                 +L+D
Sbjct: 148 AAWSEEERAFFQAWKSWMNAKGLVDFPGMLEAA---LAKPGGLGA---------RFLLVD 195

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QD + +Q  ++    +              L  VGD+ Q+IY F GA+    L     
Sbjct: 196 EAQDLTPLQLLLVEKWAQ-----------GARLALVGDDDQAIYGFMGADGASFLGV--- 241

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
                         + L  S+R  A +  V + V    +N        
Sbjct: 242 ---------PVEDELVLGQSYRVPARVQRVAEAVIRRVQNRAPKRYAP 280


>gi|91974518|ref|YP_567177.1| hypothetical protein RPD_0036 [Rhodopseudomonas palustris BisB5]
 gi|91680974|gb|ABE37276.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 886

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/435 (9%), Positives = 107/435 (24%), Gaps = 55/435 (12%)

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                    V   +         P V+L+   +  +  + I +  ++P+          +
Sbjct: 404 PDALEPAASVIWCSAIDLASSPRPHVWLLGMNAGRWP-RRISEDRLIPNHVLPIEELDPL 462

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
           P +         ++    +       R     + R    LI        +  ++ +    
Sbjct: 463 PIADGDKRDFGTILATATEVAMSHSRRDAGGRL-RGRSPLIKSFAVTYLDRGRTPE---- 517

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
              + +   D  +        +         W                       K+ ++
Sbjct: 518 ---HAASEADRLLACPAEFAKLPVAVSGIGCWRDWFSGGLTAHDGLVAANHPRITKLFER 574

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN--QTFNRGLIIHKLLQVIFTLPEHK 800
             S     +     +          T  E             G ++H +LQ         
Sbjct: 575 SLSATSLKLLLRDPIRFVWRYGFRWTAPEDADEPLTLDGLAFGNLVHAVLQNAVDGLSEA 634

Query: 801 ------------------RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM--TTA 840
                                 + ++  +            +  + T             
Sbjct: 635 GGLAAADRAAIDARIAAAIGGTVAAWEAEFPVPPAVIWRSAVERASTTATAALTYPMAAL 694

Query: 841 MSCDSYSEVSV----------------SGKINCPKKDIIISGRIDQISISQQN--IFIFE 882
               S++E+                     +  P   ++I G+ID++ ++       + +
Sbjct: 695 PDQRSWTEIPFGKPDEAEGERDLPWPTEKTVEIPGTGLLIDGKIDRLDLAGDRSKARVLD 754

Query: 883 YKTHHHVPQEIEHIPYTHI-AQLSIYEKILKDSYP-NKSLVCLLIYVSEPK----VFIIP 936
           YKT     +  E +       Q  +Y   ++        +   L Y + P+    VF + 
Sbjct: 755 YKTGKLDRKMAEKVIDGGRELQRCLYAFAVRTLVEAGVGVEAALFYPNAPEGEQAVFPLT 814

Query: 937 QNKLNKAFAEISTKI 951
              L  A A+++  +
Sbjct: 815 DAALEAALAKVTQAV 829


>gi|237713878|ref|ZP_04544359.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409213|ref|ZP_06085757.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647413|ref|ZP_06725001.1| ATP-dependent DNA helicase, RecQ family [Bacteroides ovatus SD CC 2a]
 gi|294809804|ref|ZP_06768486.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens SD
            CC 1b]
 gi|229446034|gb|EEO51825.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352960|gb|EEZ02056.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637240|gb|EFF55670.1| ATP-dependent DNA helicase, RecQ family [Bacteroides ovatus SD CC 2a]
 gi|294442990|gb|EFG11775.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens SD
            CC 1b]
          Length = 1603

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 17/122 (13%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD +  ++ +I +L E         +    + AVGD+ Q+IY+F  ++ + +  
Sbjct: 1174 LVIDEAQDMTEDEFALIAALIEK--------NESLKVIAVGDDDQNIYAFRNSDSRHMQS 1225

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                 Q R           EL  +FRS ++++   +   ++  +    +      +   S
Sbjct: 1226 LITNYQARH---------YELCENFRSRSNLVAFANAFVNLIPHRMKHTPIQAHQLEKGS 1276

Query: 300  SR 301
             R
Sbjct: 1277 IR 1278


>gi|228938270|ref|ZP_04100884.1| UvrD/REP helicase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228971149|ref|ZP_04131781.1| UvrD/REP helicase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228977757|ref|ZP_04138142.1| UvrD/REP helicase [Bacillus thuringiensis Bt407]
 gi|228781965|gb|EEM30158.1| UvrD/REP helicase [Bacillus thuringiensis Bt407]
 gi|228788575|gb|EEM36522.1| UvrD/REP helicase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228821406|gb|EEM67417.1| UvrD/REP helicase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326938778|gb|AEA14674.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 778

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 36/217 (16%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAAKMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  S+RST  I+      F+     +G +  +      + +        +L E + ++
Sbjct: 602 INLTRSYRSTKPIIE-----FTRALVPEGKNIHAFERDGEKPTVTKVADYSELHEHITTK 656

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              +   Q  +  +       ES+A+  A R    I 
Sbjct: 657 VT-ELQKQNHNTIAIICKSATESAAAYEALRHIENIK 692


>gi|198277204|ref|ZP_03209735.1| hypothetical protein BACPLE_03413 [Bacteroides plebeius DSM 17135]
 gi|198269702|gb|EDY93972.1| hypothetical protein BACPLE_03413 [Bacteroides plebeius DSM 17135]
          Length = 960

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 69/487 (14%), Positives = 138/487 (28%), Gaps = 94/487 (19%)

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
           +    +    K   Q   +      D LD+     L     S++ +    + LE     +
Sbjct: 433 ELCKRLADILKQVAQLYRKQAASTSDALDQLYREAL---FKSFTMVNRFHALLESKDLEV 489

Query: 562 KRA-----------------HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           +                   H      +++M V   + L+   V L+             
Sbjct: 490 QPTTFHRLLVRVMSTASIPFHGEPAIGMQVMGVLETRNLDFRHVILLSVNEGQLPK---- 545

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                 +  D   IP  + ++     I               Y    Y  + RA    ++
Sbjct: 546 ------AGGDASFIPYNLRKAFGMTTI---------DHKIAVYAYYFYRLLQRAEKATLL 590

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               +    +    R    ++ +  +  +R +     + I        +           
Sbjct: 591 YNTVSDGMNRGEMSRFMLQLLIEWGYPVQRKQLEAEQSPIASSPICIPKSPDI------- 643

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
              + ++ + D +  PK L SP   +      L        G    E + ++  +   G 
Sbjct: 644 --MKRMQSVFDVRVNPKALLSPSALNCYLDCPLKFYYKYVAGLAAPEEVSAEIDSAKFGS 701

Query: 785 IIHKLLQV----IFTLPEHKRKNFITSYCTKNAKL--------------WPAKEYKN--- 823
           I H   +     +    +   K+ + +   +  KL               PA E      
Sbjct: 702 IFHYAAEHIYKELTAHGKVINKDTLEALLKEEVKLQNYVDNGFKELFFHLPADERPEYNG 761

Query: 824 --------LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS----GRIDQI 871
                   +L  I +LL N  +  A      SE  V   +        I     G ID++
Sbjct: 762 VQLINSAVILRYIQQLLRN-DLRHAPFTFVGSEQRVMEDVEIQTPKGAIRSRMGGIIDRM 820

Query: 872 SISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEKI----LKDSYPNKS 919
                 + I +YKT      P  +E +         ++ Q  +Y  I    L++   ++ 
Sbjct: 821 DSKDNVLRIVDYKTGGKADTPPSVESLFTPGPKRPNYVFQTFLYAAIVCRKLRERNDDRK 880

Query: 920 LVCLLIY 926
           +   L+Y
Sbjct: 881 VAPALLY 887


>gi|167902087|ref|ZP_02489292.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei NCTC 13177]
          Length = 331

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 97/292 (33%), Gaps = 9/292 (3%)

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNE 540
           ++       + +       +  + G  +  ++ ++    E      + L E        +
Sbjct: 9   VERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQ 68

Query: 541 QNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF          
Sbjct: 69  PGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLR 128

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      +D+ G  +        +       +   +    E  RL+YV +TRA 
Sbjct: 129 EPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVYVALTRAV 186

Query: 660 DQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            +  +    + ++ + K++ +     +V  +  + +   K    ++   + W A      
Sbjct: 187 YRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPV 246

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                P+           + +  +      +   +   I + S++ +    +
Sbjct: 247 TLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARD 298


>gi|56419920|ref|YP_147238.1| hypothetical protein GK1385 [Geobacillus kaustophilus HTA426]
 gi|56379762|dbj|BAD75670.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 556

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 85/269 (31%), Gaps = 30/269 (11%)

Query: 112 DRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY 171
           +R     + + T        YL   YE+  KK    D  DL      LLK  D    +  
Sbjct: 210 ERAGRGNIPRLTKEQRRTIFYLYKEYEKMLKKQ-FHDHLDLEDYALLLLKYFDDIPDLL- 267

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
               + ++I +DEVQD   +Q + +  L              +++   GD KQ IY    
Sbjct: 268 ----KYDYIFVDEVQDLQAMQLKALVGLA------------KKSIVVSGDPKQRIYK--- 308

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             P          + R            L  ++RST  I+ +   +  I      L +  
Sbjct: 309 RSPFSYRDLGLHIEGR--------KTRNLRTNYRSTKQIMKLASSLEFIDAENDRLDDQR 360

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                 + S      + +L   +V+Q         ++  +       ++ A      +  
Sbjct: 361 FVREGKKPSIYFFPSSKELSCHLVNQVKVIQKNDPDATIAVIHRHDGDTYAISQ-CSVLM 419

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +       T    G++  +  +   +L 
Sbjct: 420 ELKKHFDVITSSQYGRRFDLNKQKKPILF 448


>gi|47567525|ref|ZP_00238236.1| ATP-dependent DNA helicase rep [Bacillus cereus G9241]
 gi|47555720|gb|EAL14060.1| ATP-dependent DNA helicase rep [Bacillus cereus G9241]
          Length = 510

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 95/270 (35%), Gaps = 52/270 (19%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 131 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKEAKVLGRM 189

Query: 100 LKKSQDEFIKIRDRFNTYKMFKST---LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +   + +   +R    T +    T       T A ++        K       +D+   T
Sbjct: 190 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTDASWVTGE-----KPKNW---DDICSLT 239

Query: 157 NDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L     
Sbjct: 240 VNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF---- 295

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +  +GD  Q+I++ H +E         +     TN       I L  S+
Sbjct: 296 -------PAARMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------INLTRSY 341

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           RST  I+     +    +N      D    
Sbjct: 342 RSTKPIIEFTRALVPEGKNIHAFERDGEKP 371


>gi|282880687|ref|ZP_06289389.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305413|gb|EFA97471.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
          Length = 952

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 79/617 (12%), Positives = 171/617 (27%), Gaps = 69/617 (11%)

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  IS  +  +     G K  I   D  +L                        V     
Sbjct: 296 ARYISEWLQHNGRMEAGIKTAIVMCDESIL-----------QTVIHCIPPEVSKVNITTG 344

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
           + L        +  L +  LS          L       S   I  +     E     E 
Sbjct: 345 YPLAQSPVASLIHQLLKLQLSSYAHNGKYR-LTEVKRMLSHPYIKYLSENAPELMANLEE 403

Query: 470 IQKFANCGISKFQHVIKYI--HELIHIAQFCSPHDFFTLILGAKK-GRQQFISRFGNEVI 526
            + +              +   EL+  +      ++   IL       +     F  E +
Sbjct: 404 NKHYFPTRKELSVDAGLTLVFKELVDDSTNLYLTEWILEILQLIGKNGRDSEDAFFQESV 463

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISE---LEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
             +   +N       +    +Q    E   L+    T    H      ++IM V   + L
Sbjct: 464 FRMYTLMNRLHELIHSGDLRIQLTTYEKLILQLIQNTSIPFHGEPAEGIQIMGVLETRNL 523

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           +   + ++                I  S+ +  G+     +      +        +   
Sbjct: 524 DFDHILILSCNEGNMPKGVNDVSFIPYSIREAYGLTTVKHK------VAIYAYYFHRLLQ 577

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           +     L Y   T  S +  + +             + + +   +  + + +K  +    
Sbjct: 578 RASDITLTYNNSTEGSHKSEMSRFMLQM-----LVESGHPIQKIAMLSGQEIKHHEAHPI 632

Query: 704 INKDEWIAYEWSTHHPENTPLERE---------ETIKQLMDEQKIPKKLFSPIKNDINEP 754
             K+  +   ++ +    T + R           TI +L + +           N  +  
Sbjct: 633 EKKEMVMEVLYNMNQISPTAINRYMRCQLQFYYNTIAKLYEPEPDNDIDNRMFGNIFHRS 692

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP-EHKRKNFITSYCTKNA 813
             L  +++  + K    + L+  +T +      +LL+         +             
Sbjct: 693 AELIYTSLQHESKWIEPTELNKLRTKS------QLLERFVDQAFYEEIYKSKDKVRPIEY 746

Query: 814 KLWPAKEYKNLLLSITRLLE-NPMMT--TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
                   K ++  + RLL+ +  +     +S +     ++S +     K I + G ID+
Sbjct: 747 NGLQLINRKVIIDYLKRLLKIDEALAPFRILSLEERVNTTISFETAQGLKTITVGGIIDR 806

Query: 871 ISI--SQQ---NIFIFEYKTHHH---VPQEIEHIP---------YTHIAQLSIYEKILKD 913
           +           I + +YKT      VP ++E I            +  Q  +Y  I++ 
Sbjct: 807 LDEVTDPDGTHRIRVVDYKTGRPATSVPTDVEDIFSDDNLTEKHKDYYLQTFLYANIVRQ 866

Query: 914 ---SYP-NKSLVCLLIY 926
                P    +   L++
Sbjct: 867 HQELNPHGLPVSPALLF 883


>gi|295687599|ref|YP_003591292.1| double-strand break repair protein Addb [Caulobacter segnis ATCC
           21756]
 gi|295429502|gb|ADG08674.1| double-strand break repair protein AddB [Caulobacter segnis ATCC
           21756]
          Length = 995

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/428 (11%), Positives = 101/428 (23%), Gaps = 47/428 (10%)

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF-TLRNEQNSYSSLQELISELE 555
           F  P      ++ A +G       +     + L   +       E    +S Q     L+
Sbjct: 502 FARPCQAAKALVEALEGLIAPARLWAGGAGECLGALMAALIQDGEPLPDASPQAFADILD 561

Query: 556 -QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   R   A H  +RI+    A+ + +  + L      V+         +   +  
Sbjct: 562 RLVNEETVRVGGATHPRLRILGAIEARLVRADRLVLAGLEEGVWPQGAPIDPFLSRPMRS 621

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G+P    +     +  +               R                         
Sbjct: 622 RLGLPPPERRVGLTAHDFAQAASAPDVVLVHCERR----------------------GGA 659

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
            + +  W   +             +           A E  +      P    E   + M
Sbjct: 660 PAVESRWLWRLKTLAAGAGLALPRRDDVLDWVRALDAPEPYSPIKRPEPRPPVEDRPRKM 719

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI- 793
              +I      P      +   L P          LE      +   RG  IH   +   
Sbjct: 720 AVTRIEALTRDPYAVWARDILKLYP----------LERPDEPVEARARGTAIHAAFEKFA 769

Query: 794 ---FTLPEHKRKNFITSYCTKNAKLWPAK------EYKNLLLSITRLLENPMMTTAMSCD 844
                            +  +              E      +   + +      A +  
Sbjct: 770 ETYPDSVPADAAAVFERFYIEALVGAGMPPTALTRERALAREAAQWVADWERQRRAGARK 829

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
              E     +++   +   ++ + D+I  +      I +YKT     Q  + +      Q
Sbjct: 830 IVVEAEGKLELSINGRAFTLTAKADRIEPTQDGTAHILDYKTGAAPSQ--KQVDTGFSPQ 887

Query: 904 LSIYEKIL 911
           L++   IL
Sbjct: 888 LTLTAAIL 895


>gi|295131132|ref|YP_003581795.1| UvrD/REP helicase [Propionibacterium acnes SK137]
 gi|291375557|gb|ADD99411.1| UvrD/REP helicase [Propionibacterium acnes SK137]
          Length = 751

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 56/413 (13%), Positives = 115/413 (27%), Gaps = 42/413 (10%)

Query: 8   SLNESYELIY--KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           +  ES +           P   V  I+   +  +      + + A+ +  A +T      
Sbjct: 329 ASLESLDRALPRASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRT 388

Query: 66  FSLLSSFFLTQKF--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
              L    L       P++    + +  +   +   L ++     +        + F+  
Sbjct: 389 SQWLWRDVLDHAGPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLN 446

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                    L   Y +  + +  + F +        L +    A          +H+L+D
Sbjct: 447 RRDRDAVWTLVKKYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVD 496

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           E QD +   W +IRSL  +          P  +F   D  Q IY       +        
Sbjct: 497 EGQDLTPAHWRLIRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY------- 540

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
                     +     L L++R+TA IL     V    E    +  D     +    R  
Sbjct: 541 ------GIMTRGRSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSA 591

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTI 362
           + G   +     +  +      +       D   + ++  +  R     + + +      
Sbjct: 592 RRGPDVIAHPCTTITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQ 651

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                   I     +V+   R      + +  F  +   I +   D     D 
Sbjct: 652 TRAVGHGSIPPGAPVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|330943476|gb|EGH45819.1| UvrD/REP helicase, putative [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 584

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 22/158 (13%)

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F D+ +      K +   A+   ++ +    I++DE QD S  Q  ++  LTE       
Sbjct: 190 FGDIDMLALKAFKDKKFDAY-YSRVARRFPLIIVDECQDLSAEQLRIVEYLTEFGIKFHF 248

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                      GD  QSIY F  + P +V                KF   EL  ++RS  
Sbjct: 249 G----------GDLNQSIYGFRRSNPDKVTELMA---------KLKFEPYELKTNWRSGQ 289

Query: 269 DILTVVDKVF--SIPENAQGLSEDSTTTIRHRSSRIGQ 304
            I+ +   +           ++ +    + +++     
Sbjct: 290 GIVDLCTNLLGGERISGNPDIASEQPRILEYKACPSEL 327


>gi|167823548|ref|ZP_02455019.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 9]
          Length = 264

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 86/249 (34%), Gaps = 9/249 (3%)

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNE 540
           ++       + +       +  + G  +  ++ ++    E      + L E        +
Sbjct: 18  VERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQ 77

Query: 541 QNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF          
Sbjct: 78  PGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLR 137

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      +D+ G  +        +       +   +    E  RL+YV +TRA 
Sbjct: 138 EPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVYVALTRAV 195

Query: 660 DQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
            +  +    + ++ + K++ +     +V  +  + +   K    ++   + W A      
Sbjct: 196 YRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPV 255

Query: 718 HPENTPLER 726
                P+ R
Sbjct: 256 TLGALPVPR 264


>gi|145518866|ref|XP_001445305.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412749|emb|CAK77908.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2340

 Score = 71.5 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 92/306 (30%), Gaps = 40/306 (13%)

Query: 134 NAHYEEAKKKNCVLDFEDLI-INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              YE  K+     D  D++     +L +  DV   +         ++++DE+QD     
Sbjct: 668 FETYERLKQSYGYYDLLDIVNHINYELTQGNDVIECVH--------YLMLDELQDVPRAV 719

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++  + E              LF  GD  Q+I    G +   V       +       
Sbjct: 720 LVLLDRMAE------------FGLFCCGDNAQNIAKGIGFKFFEVQNCLSNYRGNQRKRK 767

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQG-----LSEDSTTTIRHRSSRIGQVGT 307
               + +L ++FRS   IL + + V  + E         L ++++     +   +     
Sbjct: 768 TNLKLFDLNINFRSHNQILQLANSVIRVLELYFPYKIDRLKKETSDLTGPKPIVLQTEDP 827

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
             L   +     ++    +           QES   +            +    + +  +
Sbjct: 828 QDLLSYIQEFFTNERKTVEFGCNQAIIVKDQESKDKLPQE---------LQNALVLTIYE 878

Query: 368 KRVIQAKDILVLVRKRKDTPLITFL--TRFLKNDYKISVVGNDRFILT---DHLAIKDLM 422
            + ++  D+++       T  I        L+           R   T     +   DL 
Sbjct: 879 AKGLEFDDVILFNFFNDCTTSIEDWKSLNELEVQSNYMTQEQFRNYQTIHQTEIIAADLN 938

Query: 423 ALGRFI 428
           A  + I
Sbjct: 939 AYNKLI 944


>gi|227872192|ref|ZP_03990559.1| ATP-dependent deoxyribonuclease subunit B [Oribacterium sinus F0268]
 gi|227841975|gb|EEJ52238.1| ATP-dependent deoxyribonuclease subunit B [Oribacterium sinus F0268]
          Length = 1162

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 76/667 (11%), Positives = 180/667 (26%), Gaps = 93/667 (13%)

Query: 343  SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
             I A  I+  +        I    ++R  + ++I V++    D  L           + I
Sbjct: 353  VIEAANISREVEE--ACSHIRYLVEERGYRYQEIGVVLP---DVELYRDAFFQQGRKFAI 407

Query: 403  SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK-SPLFNFSEDDIFKICTQRH 461
             +   +   L D    K L +    +       SF   L+  P     E+D         
Sbjct: 408  PLFLEEDIKLFDSPFSKVLRSALEVMEKGLLYDSFFRYLRAFPYRGMEEEDRIDALENEA 467

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI------LGAKKGRQ 515
              + +       +                L       S  +    +      L A    +
Sbjct: 468  RAKGLKGKSAFRSLFQEESLLEAEALFSLLEENEGSHSLKERIESLESFTEKLMALFQLE 527

Query: 516  QFISRFGNEVIDVLDE-----------FLNFTLRNEQNSYSSLQELISELE-QYPPTIKR 563
            +      NE +D L +            L+           + +E  +  +        R
Sbjct: 528  EEAIFLKNEGMDSLSQSLERSVSQIQLLLSKMKEGLGEIPVNKKEFSAFFDMALSLEKLR 587

Query: 564  AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               A +++V +  +  ++         +   + +      KK                  
Sbjct: 588  QIPATNDQVLVGDLTRSRFHNPKAFLFLGFNAGLIPLPPKKKSLFTEEEKSFLRQEHCTL 647

Query: 624  QSKS-RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA---------SDQLIICKHSNTSNE 673
               +   + + +   +    + +E   L Y                + L +         
Sbjct: 648  SPLAWEESYIQEFYLYHAFLSPKEELYLSYPLRIPKGRGGISPILQEALRLFPKLKIRKL 707

Query: 674  KKS---------NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
            ++           + +    +      +   +  +        E      S    E    
Sbjct: 708  EREIQEMQSFSQAKDSLSKELPKLCKKEVLFRSEEEVLPYFHLESFQLLHSLWQKEEYKK 767

Query: 725  EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESL 773
            + E+ ++ +  E +         K    E    + S ++   +              E  
Sbjct: 768  DLEKLLEAIFWENRHLPLSKELSKGLYGEKIRGSVSRLEGLNRCAFFHFLRYGLHLQERK 827

Query: 774  LSDNQTFNRGLIIHKLLQVI-----------------------FTLPEHKRKNFITSYCT 810
             ++ Q F+ G + HKL++                         F + E ++      +  
Sbjct: 828  EAEIQAFDLGNLYHKLVESFFKKLKEEKLKGEVLSEHFQEYLNFAIAESEQDPEFAPFLE 887

Query: 811  KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
                 +   ++K    +I  +LE          D   E ++    +     +   GR+D+
Sbjct: 888  GGRNQYFLHKFKENAKTILWVLE----RQLSGGDFQVE-ALERDFHYESDTLSFRGRVDR 942

Query: 871  I--SISQQNIF---IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLV 921
            +   + ++  +   + +YK+  +    ++ +      QL +Y  IL    +  +P+  L 
Sbjct: 943  VDSYLDEEKNYYLKVLDYKSG-NTDFSLDLLKAGLQIQLPLYLSILLEEERKRHPDYKLH 1001

Query: 922  -CLLIYV 927
               L Y 
Sbjct: 1002 PAGLFYF 1008


>gi|324325141|gb|ADY20401.1| helicase, UvrD/Rep family protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 777

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 95/270 (35%), Gaps = 52/270 (19%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKEAKVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKST---LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +   + +   +R    T +    T       T A ++        K       +D+   T
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTDASWVTGE-----KPKNW---DDICSLT 506

Query: 157 NDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L     
Sbjct: 507 VNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF---- 562

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +  +GD  Q+I++ H +E         +     TN       I L  S+
Sbjct: 563 -------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------INLTRSY 608

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           RST  I+     +    +N      D    
Sbjct: 609 RSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|312112100|ref|YP_003990416.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y4.1MC1]
 gi|311217201|gb|ADP75805.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y4.1MC1]
          Length = 1172

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 79/725 (10%), Positives = 195/725 (26%), Gaps = 162/725 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            + ++       IA  I  ++  +           + +DI ++VR  +D      L + + 
Sbjct: 320  EAANRRAEVEAIAREIVRLVRDE---------GYRYRDIALIVRNTEDYR---DLVKTIF 367

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            +D+ I    +++  +  H  I+ L A    I S+    S    +K+ L    E+D   + 
Sbjct: 368  SDFHIPYFMDEKESMHHHPLIELLRASMEIITSRWRYESVFRAIKTDLLFPVEEDTAALR 427

Query: 458  TQRHETETVYEYI----------------------------QKFANCGISKFQHVIKYI- 488
                  E                                           K       I 
Sbjct: 428  EAMDRLENYVLAYGIKGEKWTNGERWTYRRYQALEGLSVPQTDEEKQYEEKLNQWRDMIA 487

Query: 489  -------HELIHIAQFCSPHDFFTLILGAKKGRQQFI--------------SRFGNEVID 527
                     +       S  +   L L   +  ++                +R   +V +
Sbjct: 488  APLSKLERRMRRAKDGRSLCEAIYLFLEELQIPRKLEKMSKEAEEQGRLMEARQHEQVWN 547

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESP 586
             + +  N  +    +    L E    +E     ++ +      ++V I  +  ++ ++  
Sbjct: 548  AVIDLFNQYVDMLGSEPIPLAEFAKIIETGLDRLEFSLVPPAIDQVIIAQLDRSRLIDVK 607

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
              F+V     V   K  +   +  +  +             R  +  +            
Sbjct: 608  CAFIVGVNEGVIPAKAKEDGLLAETEREILQQFGTRVAPGGREQLFYEPFFI-------- 659

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                 Y+ +T  S++L +         K  +       + D F N ++            
Sbjct: 660  -----YLALTCPSERLYVTYPLANEEGKALSPSLIIKQLADLFPNLQKHVCGNDPLDAEH 714

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY----------- 755
             E  A+           + + +  K+      +   +++   +D                
Sbjct: 715  AEQQAFITVPRATLTYLVAQLQAWKRHYSIAPLWWDVYNFYASDPQWRKQARKAIAGLFY 774

Query: 756  --------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGL 784
                                  + S ++   K              E  +      + G 
Sbjct: 775  TNAATPLKKEISKRLYGKKIQASVSRMEQFQKCPFSHFVSHGLRLKERDVFRLDAPDIGQ 834

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYC-TKNAKLWPAKEYKNLLLSITR--LLENPMMTTAM 841
            + H  L++I       + ++   Y   +  +   A+  + +   I +  LL +       
Sbjct: 835  LFHYALKIISDRLREAKIDW--RYLSKQQCEQLSAEAVEQIAPLIQQQVLLSSNRYHYMK 892

Query: 842  SC---------DSYSE-------VSVSGKINCPKKDII--------------ISGRIDQI 871
                       +  SE       V +  ++       +              + GRID++
Sbjct: 893  RKLQNVVARTTNVLSEHAKASGFVPIGLELEFGPNGALPPLTFRLPDGTVMELVGRIDRV 952

Query: 872  SISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCL 923
              ++ +    + + +YK+       +  + Y    Q+  Y  I+    +     ++    
Sbjct: 953  DKAESSRGVLLRVIDYKSSAKT-LNLAEVYYGLALQILTYLDIVLTYAEQLVGKEAFPAG 1011

Query: 924  LIYVS 928
            ++Y  
Sbjct: 1012 ILYFH 1016


>gi|270284111|ref|ZP_05965559.2| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093]
 gi|270277114|gb|EFA22968.1| conserved hypothetical protein [Bifidobacterium gallicum DSM 20093]
          Length = 1525

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 70/683 (10%), Positives = 186/683 (27%), Gaps = 97/683 (14%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYV-SLSMETGNPTILKKAQTLQQASQT 59
           L+   G  + ++      +         +   +      +   +  +   A T  Q    
Sbjct: 147 LRRVLGRHIAQAQAG---ETCATCEQLRAYFEQDHWERVICNQSAPVDAAAPTAAQTLAQ 203

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIK---------- 109
           +  +   S  ++  LT +     ++  + I+    +   +++       +          
Sbjct: 204 ETPDMSGSNANANVLTLQPQTTASLFLEGID---GEFIAQMRDMLARMAEIGLTDVQESE 260

Query: 110 -IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN----CVLDFEDLIINTNDLLKKRD 164
            +    +T    +       LA  L   Y     +       LD  +L+     L++ + 
Sbjct: 261 YLDAVRDTGLTGERLRTQWHLAWALRREYASEVARAFPHEYRLDPSELLGAAARLVRDQA 320

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +R         +++D+VQD +L     +++L           S    L   G+  +
Sbjct: 321 EPPMLRE--------LIMDDVQDLTLAGLAFLQALA----------SRGVRLTLAGNPDE 362

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL-TVVDKVFSIPEN 283
           S+ +F G+ P+ V R  R          Q            S+  +  T++D V S    
Sbjct: 363 SVQTFRGSYPEYVFRVLRDQMHAQVTHLQPLRHD-------SSPSVTPTMLDTVASRVSL 415

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
           +    E + T + HR  ++           + +      +   +          +++   
Sbjct: 416 SIEAIEPTDTAMPHRLGKLPAHEGAWPIRTLDNTDARLLDGTFKGLVYRSAQEEEDN--- 472

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                + + I ++              +   +I V++        +    R       + 
Sbjct: 473 -----VVWRIKSLH---------LDHAVPWNNIAVIMHDNAAIRTLGARLR----RDGVP 514

Query: 404 VVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
           V  +     L +   ++ L AL      +   ++   M +     +    +  I      
Sbjct: 515 VRFSSVTRALIEEPFVQALFALIELAQMRNAGIARSGMGERQAVAWVASRVRSIAASALL 574

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
                          +   +  ++ I  L  + +                     ++   
Sbjct: 575 QPAGRAQDTADQPLHLETIETAMQAIDSLSSVVKHAPAAT-----------DSTLLTSLE 623

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
            +   +  +F+    ++  + + +L    S  ++         S   + + +M +H    
Sbjct: 624 EQWQALHADFVASARQH-HDDFPTLTIDNSNFDESARNE-EPLSFGSDAMTLMLMHDGAP 681

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP--------------QSKSR 628
                + L+   S+           +          P  +P              +    
Sbjct: 682 KLLDALQLIMGQSRTIMMYRRLWSLVHTIAQQFATQPRMMPADALACAWNATNVAKRWQT 741

Query: 629 NNIVSDLIKHLKKSTQEEYNRLL 651
               ++          +   RL 
Sbjct: 742 AAFTNNAAGRAANDRLDVAMRLF 764



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/413 (8%), Positives = 87/413 (21%), Gaps = 37/413 (8%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  +A  + ++  +  +   G  R     D  + +   +           +     
Sbjct: 554 ERQAVAWVASRVRSIAASALLQPAG--RAQDTADQPLHLETIETAMQAIDSLSSVVKHAP 611

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-----------FNFSE 450
            +        L +         +        DD   + +  S             F    
Sbjct: 612 AATDSTLLTSLEEQWQALHADFVASA-RQHHDDFPTLTIDNSNFDESARNEEPLSFGSDA 670

Query: 451 DDIFKICTQRHETETVYEYI--QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
             +  +     +     + I  Q        +   ++  I +         P D      
Sbjct: 671 MTLMLMHDGAPKLLDALQLIMGQSRTIMMYRRLWSLVHTIAQQFATQPRMMPADALACAW 730

Query: 509 GAKKGRQQFI------SRFGNEVIDVLD---EFLNFTLRNEQNSYSSLQELISELEQYPP 559
            A    +++       +  G    D LD       +      +  +++   I ++ Q   
Sbjct: 731 NATNVAKRWQTAAFTNNAAGRAANDRLDVAMRLFEYANG--ASEGTTITAFIDQVRQLQI 788

Query: 560 TIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                         V + T   A G     VF+       + +   +         DD  
Sbjct: 789 EADSLAKVAPIDQAVTLTTPAGAAGRHWTHVFMPAVQEGTWPNLVPRGTMF---GGDDLV 845

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ-----LIICKHSNTSN 672
                                  +       +   V +TR         + +   ++   
Sbjct: 846 QVALYGAPTFMRETQGGQHDLAVREVLANEQKSFLVALTRVDPTAQGGSVWLSAVASEDT 905

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                   +    ++   N       +L      D+            N    
Sbjct: 906 APSEFLFAYAPEWFNDRENPYWQPLQRLAAMGETDDTDHVAAQQLKDLNEDAR 958


>gi|170751474|ref|YP_001757734.1| double-strand break repair protein AddB [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657996|gb|ACB27051.1| double-strand break repair protein AddB [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1054

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/378 (11%), Positives = 91/378 (24%), Gaps = 45/378 (11%)

Query: 529 LDEFLNFTLRNEQNSYSSLQELISEL---EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           LD   +     E        +  +           +  +  A H  +RI+ +  A+ L  
Sbjct: 587 LDALFDDLEMAEPGLMPGRFDDYATFFTSLARERKVACSGEAPHPRLRILGLLEARLLSV 646

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V L      V+  + +    +   + +  G+     +     +     +         
Sbjct: 647 DRVVLGGLDEGVWPVRTLTDSFLNRPMRERVGLNPPERRIGQMAHDFVQALGCRDA---- 702

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
                    +TRA  +           E      +       +   D R   +       
Sbjct: 703 --------VITRALKR-----------EGAPTVPSRLIQRLRALSGDARWDDVLRAGRRI 743

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                  +         P E          +  +  +  S  + +       +       
Sbjct: 744 TGLAARLD-------AAPPEPRLKRPAPKPDPALFPRSLSVTEIETLVRDPYSIFARHVL 796

Query: 766 GKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK-- 822
           G   L+ L +      RG ++H +  +     P     +            +   E +  
Sbjct: 797 GLDPLDPLAAAPGVATRGSLVHDVFAEFAARHPADLPPDAAERLLNLAVNAFGEIEAEYP 856

Query: 823 --------NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS 874
                         +  L+            Y EVS    I   ++   +  R D+I + 
Sbjct: 857 NLYAEWWPRYERMASAYLDWEAQRRPGLTRVYPEVSGRWVIPMGRETFTLRARADRIELR 916

Query: 875 QQN-IFIFEYKTHHHVPQ 891
                 I +YKT      
Sbjct: 917 PDGTACIVDYKTGTPPSA 934


>gi|159037562|ref|YP_001536815.1| NERD domain-containing protein [Salinispora arenicola CNS-205]
 gi|157916397|gb|ABV97824.1| NERD domain protein [Salinispora arenicola CNS-205]
          Length = 700

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 77/266 (28%), Gaps = 38/266 (14%)

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +          R    T        A   L       Y+    +  V DF DL++     
Sbjct: 382 ISSLPKYLAASRPGRRTALRKAHKEAVWAL----YEEYQRLLNERGVQDFPDLLLTALAE 437

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L++           D     ++ DEVQD +L    ++ ++  D   G         L  +
Sbjct: 438 LRRHPT--------DGGYTTVIADEVQDLTLTGVRILHAIAGDSPNG---------LLLI 480

Query: 220 GDEKQSIY--SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           GD +Q++Y   F  A+    +R                    L +++R+ A I+     V
Sbjct: 481 GDAQQAVYPGGFRLADAGINIR--------------GGRAEVLHVNYRNAAAIMQAALNV 526

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
               E    +   + T              V         HD+          +  D+  
Sbjct: 527 LD-GEPFDDIDGMTITAPPAVEMTYHDGRVVHSPADSRPMHDAALRKALNDLAAQSDNAL 585

Query: 338 QESSASILARRIAYTISNMIGTDTIF 363
            +++     +R       M+    + 
Sbjct: 586 ADAAVLCATKRDVDHYLQMLRAQGLP 611


>gi|254881837|ref|ZP_05254547.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641142|ref|ZP_07995845.1| hypothetical protein HMPREF9011_01442 [Bacteroides sp. 3_1_40A]
 gi|254834630|gb|EET14939.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387273|gb|EFV68149.1| hypothetical protein HMPREF9011_01442 [Bacteroides sp. 3_1_40A]
          Length = 959

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 113/850 (13%), Positives = 232/850 (27%), Gaps = 139/850 (16%)

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D          K  V     +   Q++ +I+ D+       Q E IR   ++F + +
Sbjct: 105 DFDD--------ADKNKVDTDKLFSNLQDLRNIM-DDYTFIDDEQEEAIRQFFQNFSIER 155

Query: 208 NTHSSPRTLF---AVGDEKQSIY-SFHGA----EPKRVLREKRINQKRATNAGQKFSIIE 259
            T    R +     +G+    IY  F  +             R   +        +    
Sbjct: 156 RTALKERFISLWDVLGN----IYKGFRESLASQNIAYEGMMYRHVIEHLDVDKLPYEKYV 211

Query: 260 LPLSFRSTADILTVVDK-VFSIPENAQGL----SEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                    ++L  V+  +F+  ++A         D      +R +   + G        
Sbjct: 212 FV-----GFNVLNKVEHTLFTQLKDAGKAVFYWDYDEFYMKENRQAVTHEAGEFIRRNLR 266

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                      +             S+ +  AR +   I N + T              K
Sbjct: 267 DFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLPQWIRNNLTT------------PEK 314

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           +  V++        +            I       F L+       L+AL        + 
Sbjct: 315 ETAVVLCNEALLQPVLHSLPAEVKHVNI----TMGFPLSQTPVYSFLIALLELHTHGFNF 370

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-HVIKYIHELIH 493
            S     +S +         ++  Q    E       +F        +   +  +     
Sbjct: 371 KSGRYTFQSVVTLLKHPYTRQLTGQAELLEKELTRNNRFYPLPGELGKDEFLTRL--FTP 428

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
           ++   +     +  L    G  Q  +  G E  D  ++       +   +Y+++    + 
Sbjct: 429 LSGNLNLCIRLSETLQQVAGIYQ-ANTSGTEDTDAFNQLY---RESLFKAYTTINRFRTL 484

Query: 554 LEQYPPTIKRA-----------------HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +E+   T++                   H      +++M V   + L+   + L+     
Sbjct: 485 IEEDELTVQSETFRRLLVKVLSATNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEG 544

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                      I  +L    G+     +      I        +   + E   L+Y    
Sbjct: 545 QLPKSGGDSSFIPYNLRKAFGMTTIEHK------IAVYAYYFYRLLQRAERITLMY---- 594

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
                       NTS++  +       M+         + +  L    +          T
Sbjct: 595 ------------NTSSDGLNRGEWSRFMLQFLIEWPHPITRQFLEAGQSP---QGTSPIT 639

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                  + R   ++ L D +  PK  FSP   +      L        G +  + + ++
Sbjct: 640 VEKTPDVMRR---MQSLFDVRANPKAKFSPSALNYYLDCPLKFYYRYVAGLSAPDEVSAE 696

Query: 777 NQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNL------ 824
             +   G I H   +     + T  +   K  + +      KL       +K L      
Sbjct: 697 IDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKLQDYVDTAFKKLFFNVPQ 756

Query: 825 --------LLSITRLLENPMMTTAMSCDSY--------SEVSVSGKINCPKKDIIIS--- 865
                   +  I   +    +   +  D          SE+ V   I+      +I    
Sbjct: 757 NEKPEYNGIQLINSAVIARYLKQLLQNDLRYAPFTFIASEMEVDEPIDIQTPKGVIKSRI 816

Query: 866 -GRIDQISISQQNIFIFEYKT----HHHVPQE----IEHIPYTHIAQLSIYEKILKDSYP 916
            G ID++      + I +YKT          E     +     ++ Q  +Y  I+    P
Sbjct: 817 GGIIDRMDSKDGTLRIVDYKTGGDADTPPHVESLFIPDKKRSNYVFQTFLYAAIMCRKQP 876

Query: 917 NKSLVCLLIY 926
              +   L+Y
Sbjct: 877 TMKIAPALLY 886


>gi|114566669|ref|YP_753823.1| ATP-dependent nuclease subunit B [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337604|gb|ABI68452.1| DNA helicase/exodeoxyribonuclease V, subunit B [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 1124

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 75/682 (10%), Positives = 188/682 (27%), Gaps = 123/682 (18%)

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           +  + KD+ V+     D      L R    DY I    + +  +  H  I+ ++A    +
Sbjct: 329 QGYRWKDMAVVCH---DLDRYGSLIRRTFRDYGIPCFMDRKRDIMSHPIIELILAALEIL 385

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQH---- 483
                       LK+   + + D++  +            ++ + F+             
Sbjct: 386 SRGYRYEDVFTYLKTGFSDLTVDEVEILENYALEYGIKGNKWKEDFSYGDAESLIELNQK 445

Query: 484 ---VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD---------- 530
                K + +L  + +  +        L A   R+   S+      D+L           
Sbjct: 446 RLLFTKPLEDLGVMLKGNNTIREMAQALFAFLERENIYSKLEKWTNDLLARGFLEEASES 505

Query: 531 --------EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAK 581
                   E L   +        +L+E    LE    +++        ++V +  +  +K
Sbjct: 506 SQLWNAMIEILKQMVEIMGEQKVNLKEFKRILEAGFLSLEIKIIPTTVDQVLLGDIQRSK 565

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
             +   ++++     +              L  + GI     +   +   +    +  ++
Sbjct: 566 SHDIKCLYVIGVNDGILPS-----------LGREEGILSETEKEALQEKGLDLGYE--RE 612

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH----------- 690
              EE   L+Y  + + ++++           +        D +   F            
Sbjct: 613 MIWEEERFLIYSALAKPAERIYFSYALADEEGRALRPSLLIDQLRMIFPSLSLKTNLLED 672

Query: 691 ----------------NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                           +     ++ L     +D W          E+    R+  ++ L 
Sbjct: 673 RQWQLQMVATPESSFKHLVEKLRLGLDGKELEDFWWDVYRWYFEQESWQCSRKLLLQGLF 732

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS-DNQTFNR----------G 783
            + +         +     P   + S ++          +    Q   R          G
Sbjct: 733 HQNQPEPIEPQVSRRLFGTPLRSSVSRLEQFVSCPFAHFVRYGLQPQERKNYELNSPDLG 792

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWP------------------------AK 819
           L+ H  L           + ++     +   +                            
Sbjct: 793 LLFHDSLLHFSHKLRENNRQWLDLSKEECYAIIDTVVDEIVPSFGRGIFNSHPRYQYLLN 852

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSV-------SGKINCP-KKDIIISGRIDQI 871
             K +      +L   +         Y EV+        + +I+    + +I+ GRID++
Sbjct: 853 RLKRISRRAVWILTEHIQQGDFKPWDY-EVAFGRGGMLPAVEIDLENGEKLILEGRIDRV 911

Query: 872 --SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY----EKILKDSYPNKSLVCL 923
                +++  + I +YK+       +  + +    QL +Y        +     +++   
Sbjct: 912 DLLEFEESCYVRILDYKSGQQ-DFHLSEVFHGLSLQLMVYLKALMTAWEQMEKKQAVPAG 970

Query: 924 LIYVSEPKVFIIPQNKLNKAFA 945
           + Y       I  + K+ +   
Sbjct: 971 VFYFKIDDPMINSEEKIVEVVE 992


>gi|310819921|ref|YP_003952279.1| hypothetical protein STAUR_2648 [Stigmatella aurantiaca DW4/3-1]
 gi|309392993|gb|ADO70452.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 391

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 71/212 (33%), Gaps = 21/212 (9%)

Query: 755 YILNPSTIDTKGKTNLESLL--------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI- 805
             L+ S +       L   L              + G  +H +L+ +             
Sbjct: 7   EHLSYSRLSRFEACPLSYRLHYLDKHTAEPGVPLSFGKALHAVLERLLQEVIDTEYAGAL 66

Query: 806 --TSYCTKNAKLWPAKEYK--NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
                     + W A      +L      +L++ +       DS   ++V  +   P   
Sbjct: 67  SEERALQLYREAWAASGLSGLDLFQQGLGILQDFVRQQ-GRVDSRDILAVEKEFRLPVGP 125

Query: 862 IIISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP-NKS 919
             + G ID++  + ++ I + +YK++H +    E        QLS+Y    +  +P  K 
Sbjct: 126 FTVLGFIDRVDWVDEETIAVIDYKSNHQLFTREELDSS---LQLSLYALAARRMWPWAKK 182

Query: 920 LVCLLIYVSEP--KVFIIPQNKLNKAFAEIST 949
           +   +  +     +     + +L+ A A + T
Sbjct: 183 VRLSMWMLRHGVRQETTRTEEQLDAALAYVET 214


>gi|197335583|ref|YP_002155788.1| UvrD/REP helicase, putative [Vibrio fischeri MJ11]
 gi|197317073|gb|ACH66520.1| UvrD/REP helicase, putative [Vibrio fischeri MJ11]
          Length = 585

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           D+       + ++    ++   + +    I+IDE QD S  Q  +++ L +         
Sbjct: 196 DIEYLAIKAITEKKYEHFVHL-LVKRYPLIIIDECQDLSEEQLAILQVLAD--------- 245

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                L  VGD  Q+IY F   EP +V +               FS ++L  +FRS  +I
Sbjct: 246 -KGIKLHFVGDLHQAIYGFRDVEPAKVKQFVED---------NNFSTLQLTRNFRSCQNI 295

Query: 271 LTVVDKV 277
           +T+  K+
Sbjct: 296 VTLCAKL 302


>gi|219851418|ref|YP_002465850.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
 gi|219545677|gb|ACL16127.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
          Length = 669

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 25/168 (14%)

Query: 129 LAKYLNAHYEEAKKK---NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           L   L       K++   +  L  +D  I   +LLK+      I   I    NHI+IDE 
Sbjct: 222 LTPGLVEKLSRMKQEFWKSGYLTHQDTEIICYNLLKENIE---ICKLIVGRFNHIIIDEY 278

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD S I+ ++   L           +       VGD  QSI++++    ++  +  +   
Sbjct: 279 QDMSPIKIKIFNLL----------ENQGTVFHFVGDINQSIFNYNNVNFEKNSQLTQ--- 325

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                  ++  +  L  +FRS   I+    K+ +  E+ +G  +    
Sbjct: 326 ------KRESKVFLLTKNFRSVQRIVDTCSKIVNNTEDIKGEDDKPRQ 367


>gi|222094777|ref|YP_002528837.1| ATP-dependent DNA helicase replicase [Bacillus cereus Q1]
 gi|221238835|gb|ACM11545.1| ATP-dependent DNA helicase replicase [Bacillus cereus Q1]
          Length = 778

 Score = 71.1 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 95/270 (35%), Gaps = 52/270 (19%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKEAKVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKST---LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +   + +   +R    T +    T       T A ++        K       +D+   T
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTDASWVTGE-----KPKNW---DDICSLT 506

Query: 157 NDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L     
Sbjct: 507 VNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF---- 562

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +  +GD  Q+I++ H +E         +     TN       I L  S+
Sbjct: 563 -------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------INLTRSY 608

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           RST  I+     +    +N      D    
Sbjct: 609 RSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|322516093|ref|ZP_08069030.1| exonuclease RexB [Streptococcus vestibularis ATCC 49124]
 gi|322125508|gb|EFX96854.1| exonuclease RexB [Streptococcus vestibularis ATCC 49124]
          Length = 1121

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 71/659 (10%), Positives = 170/659 (25%), Gaps = 85/659 (12%)

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
           + Q  +       + +  +      ++A +I  ++              + KDILVL+  
Sbjct: 300 DEQLTAQDKQALQVWEVVNQKEEVAQVAKSIRQLLADGK----------RYKDILVLL-- 347

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
             D          +   + I         ++ H  ++ + +L R           + ++K
Sbjct: 348 -GDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLVK 406

Query: 443 SPLFNFSEDDIFKICT-------------------QRHETETVYEYIQKFANCGISKFQH 483
           S L+     +   +                          +   + +       +     
Sbjct: 407 SGLYGGFAQEDLDLFEYYINFADIKGRHKFLSDFTANSRDKYDLDLLNGLRLQMVEPLDK 466

Query: 484 VIKYIHE-----LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
           ++    +     L  +  F       + +        +       +V     + L     
Sbjct: 467 LLNSRKQKGSSLLKKLVVFLEAVQVPSKMASLTAKASEAEKEQNEQVWKAFTQLLEQVET 526

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQV 597
                  S+ + +S L                + V +      +   +P VF +      
Sbjct: 527 IFGEETLSVDDFLSILRSGMLACDYRTVPATIDVVNVKKYDLIQPHSAPYVFALGMTQSH 586

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG--- 654
           F      K  +               +S       +    H    +         V    
Sbjct: 587 FPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQP 646

Query: 655 ---------MTRASDQLIICKH------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                    M+    +L+           N    K      + D++      +       
Sbjct: 647 QILNETQDDMSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDAD 706

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
           L         +A  +     +   +     I  +   +   + +   +     EP  L+ 
Sbjct: 707 LDKETQTFWTVAVRYLRKRLDKDQVLIPNVIDDVTTTKVDDQVMQ--LVFPGEEPLKLSA 764

Query: 760 STIDTKGK----------TNLESLLS-DNQTFNRGLIIHKLLQ-VIFTLPEHKRKNFITS 807
           S + T               LE L S      + G  +H++ + V+         + +  
Sbjct: 765 SALMTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFECVMGDSSSENFDDKLEK 824

Query: 808 YCTK------NAKLWPAKEYKNLLLSITRLLE---NPMMTTAMSCDSYSEVSVSGKINCP 858
              +         L+   +   L   I   +      ++    +     E     K +  
Sbjct: 825 AIAQTNQEQPFELLYTEDQESRLSRQILEDIARSTASVLRDNAAVKVERE---EAKFDLL 881

Query: 859 KKD-IIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
             + I I+G ID++         + +YK+  ++  +I+        QL  Y + L+ +Y
Sbjct: 882 LANSIKITGIIDRVDRLTDGALGVVDYKSGKNIF-DIQKFYNGLSPQLVTYLEALRQTY 939


>gi|260171310|ref|ZP_05757722.1| hypothetical protein BacD2_05540 [Bacteroides sp. D2]
 gi|315919621|ref|ZP_07915861.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693496|gb|EFS30331.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1624

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 76/217 (35%), Gaps = 28/217 (12%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD  + ++ ++R+L          ++    + AVGD+ Q+IY F G++   + R
Sbjct: 1197 LVIDEAQDMGVEEYALLRALM--------ANNEEMRVIAVGDDDQNIYEFRGSDSDYMYR 1248

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              + N  +          +E+  ++RS    +   +      +           +    S
Sbjct: 1249 LTQENGSKF---------VEMTENYRSAHHPVNFANGFLRTIDKR-------IKSTPIIS 1292

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             R  + G V++              +         S     +       +A    + I +
Sbjct: 1293 MRKEE-GWVEVTRHQSKYMYQPLVEKLLQHKDKGTSCVLTQTNEEAVILMALLRKHGINS 1351

Query: 360  DTIFSNGKKRVIQAKDILVLVR---KRKDTPLITFLT 393
              I S    R     +I  L+R   KR  TPLI    
Sbjct: 1352 KLIQSMDGLRFWNMAEIRYLLRYIDKRAKTPLIPEEL 1388


>gi|125718262|ref|YP_001035395.1| second subunit of major exonuclease, putative [Streptococcus
           sanguinis SK36]
 gi|251764628|sp|A3CNU0|ADDB_STRSV RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|125498179|gb|ABN44845.1| Second subunit of major exonuclease, putative [Streptococcus
           sanguinis SK36]
          Length = 1093

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 88/867 (10%), Positives = 226/867 (26%), Gaps = 129/867 (14%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           LI  T   L   ++  + R K D +    L+D   +    Q         +F        
Sbjct: 89  LIYRTLTELDDGELKVYSRIKKDPQFIQQLMDLYHELQTAQMSFADL---EFLEEPEKRE 145

Query: 212 SPRTLFAV-------GDEKQS--IYSFHG-----------AEPKRVLREKRINQKRATNA 251
               +F         GD   S  I +F             A+   V+             
Sbjct: 146 DLVKIFTAVTAALNKGDFDSSSQIAAFAQHILAGDTDEELADLALVIDGFTRFSAEEEYL 205

Query: 252 GQKFSI---------IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                               ++R+      +               +     I H  +  
Sbjct: 206 VGLLHRKGVEIVIGTYASQKAYRAAFREGNLYQASVDFLRKLAEDYQVKPDYIPHAEAED 265

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                 ++ E      +S  +  +   +     +    +       +A +I   +     
Sbjct: 266 AFGRISKILESRYDFSESTVSLSESDRSQL--QIWATMNQKEELEYVAKSIRQRVHEG-- 321

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
                   ++ KDI +L+    D        + + + Y+I         +  H  ++ + 
Sbjct: 322 --------VRYKDIRLLL---GDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVE 370

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
           +L R           + +LK+ L+   +++++          +              S+ 
Sbjct: 371 SLERLKRYNFQLEDLLNLLKTGLYGDLTQEELDHFEQYLRFADIKGAGKLAKDFTANSQG 430

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNE 540
           +  +  ++ +           F +    A     +F          D L   L    + E
Sbjct: 431 KFDLDCLNHIRRRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNLTALLQGESQQE 490

Query: 541 QNSYSSLQELISELEQYPPTIKRAH-----------------------SANHNEVRIMTV 577
           Q  +  + +  S + +    +                            A  + V++ + 
Sbjct: 491 QERHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTVPATVDVVKVQSY 550

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL----------NDDPGIPIWIPQSKS 627
              + L +P V+ +    + F      K  +                +  I       K+
Sbjct: 551 DLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAELQIASSENLKKN 610

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-------SNTSNEKKSNQRT 680
           R   +S +    K+        +  V  + ++  L +                   +  +
Sbjct: 611 RYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIVKKPQASSDDIGS 670

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
           +  ++       +     + T        +A            +      K+L  E    
Sbjct: 671 YRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPHISKELKTETLQS 730

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKL 789
           + L +    +  +P  L+ S ++   +              E         + G+ +H++
Sbjct: 731 ETLQALYPQE--QPLRLSASALNEYFRHQYAYFLKYVLRLQEEWTIHPDARSHGIFLHRI 788

Query: 790 LQVI--FTLPEHKRKNFITSYCT-----KNAKLWPAKEYKNLLLSIT--------RLLEN 834
            + +          +    +        +   ++           +         R+L +
Sbjct: 789 FEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLLDTARATGRVLAH 848

Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKD-IIISGRIDQISISQQNIF------IFEYKTHH 887
           P     +  ++    + +  +       + +SG++D+I      +       + +YK+  
Sbjct: 849 PSGIETIGEETGFGSASTPFLTLENGRAVTVSGKVDRI----DRLTKTESLGVVDYKSGD 904

Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 E       +QL  Y   +++ 
Sbjct: 905 IKF-SFEKFFNGLNSQLPTYLAAIEEL 930


>gi|313500738|gb|ADR62104.1| Superfamily I DNA/RNA helicase-like protein [Pseudomonas putida
           BIRD-1]
          Length = 761

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 91/319 (28%), Gaps = 28/319 (8%)

Query: 77  KFTPQKNIITQEINKKSPDLKEKLK-----KSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
             TP  ++  QE+     +  + ++          ++         +      AS  L  
Sbjct: 386 AKTPMASMSDQELRSFLKEEFDYVRGRLCPTDFKAYLDSSVFHRRGRSIPLNKASRELMV 445

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                Y    + N ++D E ++      L   +           +   ILIDEVQD + +
Sbjct: 446 RAVETYVGGVEGNGLIDHELIVSQAIGALNNTNDRK-------GQFRCILIDEVQDLTEL 498

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
              ++  LT           +   LF  GD  QSIY             KR    +    
Sbjct: 499 DVVLLSKLTTPASARLADVENG--LFLAGDGAQSIY-------------KRGFALKRAGI 543

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 + L  ++R+T +ILT    + S  E      ED                   L 
Sbjct: 544 DVIGRSVSLKKNYRNTHEILTAAFNLVSQFE-FSDTDEDEVQKPSLPDFAKRHGERPLLL 602

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
               +  + +   +Q            +       + +   +   +    I S   K+ +
Sbjct: 603 RCANTHDEVEAVSRQVYALLAMGQTAGQICVIAPQKSLREEVRAALEAKGISSAELKQDV 662

Query: 372 QAKDILVLVRKRKDTPLIT 390
             +   V +   +      
Sbjct: 663 HYESDNVKISTIESAKGHE 681


>gi|312279029|gb|ADQ63686.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus
           thermophilus ND03]
          Length = 1106

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 77/646 (11%), Positives = 191/646 (29%), Gaps = 89/646 (13%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +      ++A +I  ++              + KDILVL+    D          + 
Sbjct: 300 EVVNQKEEVAQVAKSIRQLLADGK----------RYKDILVLL---GDEESYKLHVGQIF 346

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKI 456
             + I         ++ H  ++ + +L R           + ++KS L+  F+++D+   
Sbjct: 347 RKFDIPYYFGKEESMSSHPLVEFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQEDLDLF 406

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
               +  +    +         S+ ++ +  I+ L             +         ++
Sbjct: 407 EYYVNFADIKGRHKFLSDFTANSRDKYNLDQINALRSQLIEPLDKFLNSRKQKGSSLLKK 466

Query: 517 FISRFGN-EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            +      ++   + E        E+     + +  + + +   TI    S   ++   +
Sbjct: 467 LVVFLEAVQLPSQMFELSTKASEAEKEQNEQVWKAFTHILEQVETIFGDESLLVDDFLSI 526

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
                   +   V +      V  +  + + H  P +          P+     +++SD 
Sbjct: 527 LRSGMLACDYRTVPVTVDVVNVKKYD-LIQPHSAPYVFALGMTQSHFPKVGQNKSLLSDE 585

Query: 636 IKHLKKSTQEEYNRLL-----------YVGMT---RASDQLIICKH-------------- 667
            +       +E+ RL            +V M+    AS+QL++ +               
Sbjct: 586 ERSRINEATDEHRRLDIVTQINSKRGHFVAMSLFNAASEQLVLSQPQIINESQDDMSVYL 645

Query: 668 --------------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
                          N    K      + D++      +     + L         +A  
Sbjct: 646 KELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETQTFWSVAVR 705

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK------ 767
           +     +   +   + I  +   +   + +      +  EP  L+ + + T         
Sbjct: 706 YLRKRLDKDQVLIPKVIDDVTTTKVDDQVMQLVFPEE--EPLKLSATALTTFYNNQYLYF 763

Query: 768 ----TNLESLLS-DNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTK------NAKL 815
                 LE L S      + G  +H++ +  +         + +     +         L
Sbjct: 764 LRYVLELEELESIHPDARHHGTYLHRVFERVMGDSSSESFDDKLEKAIAQTNQDQPFEIL 823

Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSCDS-----YSEVSVSGKINCPKKDIIISGRIDQ 870
           +   +       I   +      + +  ++       EV     +    K   I+G ID+
Sbjct: 824 YTEDQESRFSRQILEDIARST-ASVLRDNAAVKVEREEVKFDLLLANSIK---ITGIIDR 879

Query: 871 ISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
           +         + +YKT  +V  +I+        QL  Y + L+ +Y
Sbjct: 880 VDRLTDGALGVVDYKTGKNVF-DIQKFYNGLSPQLVTYLEALRQTY 924


>gi|301063700|ref|ZP_07204212.1| UvrD/REP helicase [delta proteobacterium NaphS2]
 gi|300442237|gb|EFK06490.1| UvrD/REP helicase [delta proteobacterium NaphS2]
          Length = 614

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 68/526 (12%), Positives = 151/526 (28%), Gaps = 112/526 (21%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              L  +D+I     L+    +   I   + Q+  ++ +DE QDT       + +L    
Sbjct: 167 EGQLSHDDIIAIAGHLITNNAILQKI---MAQKYPYVFVDEAQDTFPEIVTALNTLCSG- 222

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                  S+   +   GD  Q IY                             +I+   +
Sbjct: 223 -------SNLPIVGYFGDPVQQIYDKRAGNFSGPEGF---------------KLIKKEEN 260

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           FR +  ++ +++           + + S   +          G+V++      Q +    
Sbjct: 261 FRCSKAVVNLLNAF------RTDIQQVSAGEVSK------LEGSVEIRLVAAEQPEG--- 305

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
           P++       D +  + + ++        I  +   +                L LVR+ 
Sbjct: 306 PRKRYTDEQIDRVSSKFNETL-------KIWGLHENEETKY------------LFLVRQM 346

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
               L     + L                 +      L    + I              S
Sbjct: 347 IAKRLGFETLQKLFTGL---YASTRAQEDYESGDHFLLKPFLKVI--------------S 389

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
           PL          I  + +  + V + ++  +     K ++  K + ++ ++A+       
Sbjct: 390 PLL---------IAHKANNQKEVLDILRNSSPTFNPKGKNATKSLRKMRNLARS-----L 435

Query: 504 FTLILGAKK---GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY--SSLQELISELEQYP 558
              +L        ++  +    NE+I+V +       R+ +N      L E+  E     
Sbjct: 436 IEELLEKWSNNTLQEILLYCQENEIIEVSERLSQHLERSPRNEEYNKDLHEIDKEEWLVD 495

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
              K         V  +  HT             +       +  K + ++    +    
Sbjct: 496 DFFKMRTGEIEPYVEFINEHT-----------PYSTQHGVKGEEYKNVVVVYDDIEAAWN 544

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                +      +V ++  +  +   +   RL YV  +RA + L I
Sbjct: 545 LYSFTKM-----LVPEIAGNPTEGQLDRSTRLAYVSFSRAVENLRI 585


>gi|168217990|ref|ZP_02643615.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens NCTC 8239]
 gi|182379978|gb|EDT77457.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens NCTC 8239]
          Length = 763

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 33/209 (15%)

Query: 134 NAHYEEAKKKNCV----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A Y      N +    +D +DL        +   +      K      HI+IDE QD S
Sbjct: 491 LAEYMRENLANNIDKKIIDSDDLAAMLYLKFRIEGIEESSLLK------HIVIDEAQDYS 544

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           ++Q  V+  +              ++L  VGD  Q IYSF G             ++   
Sbjct: 545 MLQLYVMSMMAS-----------GKSLTIVGDIGQGIYSFKG---------INDWKEAIK 584

Query: 250 -NAGQKFSIIELPLSFRSTADILTVVDKVF--SIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               +      L  S+RST +I+   +KV                   +           
Sbjct: 585 LVYDENAEYKHLSQSYRSTVEIINYANKVLVKQNTYEEPAKPVLRHGMVPEEIKFNNAKE 644

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +  + +V +   +            D 
Sbjct: 645 FCERLDNIVKKVKDEGKTSIAIVGKTLDE 673


>gi|257440574|ref|ZP_05616329.1| putative ATP-dependent deoxyribonuclease subunit B
           [Faecalibacterium prausnitzii A2-165]
 gi|257196897|gb|EEU95181.1| putative ATP-dependent deoxyribonuclease subunit B
           [Faecalibacterium prausnitzii A2-165]
          Length = 1117

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 94/967 (9%), Positives = 228/967 (23%), Gaps = 130/967 (13%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +   IY++L       V     + SL+ +  +       QTL  A +   +      L  
Sbjct: 43  TEGRIYRELGDALSGMVESF-SFTSLAEKILSTEGGAAVQTLSDAGRAVLVRRALEELQD 101

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                    +                + + + +   +  R          +    L+   
Sbjct: 102 NVHYYHRHRRSAAF-------CQMAAQTIDELKSAGLSGRQLAQLAGACGAESGKLSELA 154

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YE    ++  +D  D +      L++      +   +      + IDE    +  
Sbjct: 155 LIFQGYETLLARSG-MDPSDRLELAGARLEEALARHSLPEFLRDR--AVFIDEFDTFNAP 211

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           +  ++ ++                    GD    +  F GA  K+V  + R   ++    
Sbjct: 212 KKRLLGAMLAALPSVTVALCDDGAPLLPGD----LSLFSGA--KQVAAQLRQLARKNGAE 265

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                ++   L  R+   +  V                +   T    +        +   
Sbjct: 266 VAVPQLLRKDLRHRNAPGLAAVA---------------ELLETGSCTADAPAGEVRLFAA 310

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                +  +     +                  +A+  A         +      +    
Sbjct: 311 PSREEEARAAAGAVRRLMRQGVRCGKIAVVCRDIAKYRAAVRYEFRMAEIPLYCDEPTTP 370

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           +       VR   +      LT  L    K                +  L     +  + 
Sbjct: 371 EFSAPATAVRALLEIARGADLTENLTTLAK------TGLCALSEEQVCALENYA-YTWAP 423

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
                     +SP   F E ++ +   +  E       +   A          +    E 
Sbjct: 424 TAAAWREKFERSPK-GFGEQELTEEDLRNRERAEHARALLVGAVDAFRAKVRGVN--AEA 480

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE------FLNFTLRNEQNSYS 545
           I  A +            A + +     R      +   E       LN           
Sbjct: 481 ISRAAYFCLKTLGAEEQQAAQVKAIRADRGIPAAEEAAREWNVVMGLLNEMAHLLGEQTV 540

Query: 546 SLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
           ++ E           +         + V + +    +      VF++      F     +
Sbjct: 541 TVAEYEDLFGLLLRSSDLGHIPQTLDAVVLASAGKMRLDAPDYVFVLGLAEGEFPAAPGE 600

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
              +  +  D              N +V + +               Y  +T  +  L +
Sbjct: 601 VGLLTHADRDALMAQEIDLPDCFENRVVREQV-------------CFYKALTAPAKGLWL 647

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN----------SINKDEWIAYEW 714
                      +      + +  +    E                    + + E  +   
Sbjct: 648 SWPKGQGQTLCAALEPLVEALAPAAPELELTDLAATPADGLDCLGGGWPLTETERASLTE 707

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN----- 769
           + H+P  T  +    ++++ D           ++  +     ++PS ++           
Sbjct: 708 ALHNPGETEPQGLALLRRMADTAPRQVHDLPALEALLGRKLRISPSQLEKYYTCRYGYFL 767

Query: 770 ------LESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFI---------TSYCTKNA 813
                      ++      G ++H +LQ+ +   P                  +  +  A
Sbjct: 768 QYVLGLRPRRRAELSADQSGTLMHWVLQMALDPHPGPDNPMAALEPFMELDDEAMASLAA 827

Query: 814 KLWPAKEYKNLLLSITRL-----------------LENPMMTTAMSCDS------YSEVS 850
            L      + L     R                  L +    ++    +        E +
Sbjct: 828 LLVDEYAKRYLPEDTARFAYLLSRLKKSMTSLLLYLRDEQRQSSFKPVACELKIGRGEDA 887

Query: 851 VSGKINCPKKDIIIS--GRIDQ----ISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIA- 902
           V  ++        +   G +D+    +         + +YKT          +   +   
Sbjct: 888 VPAQVYHLSDGRTVQLVGTVDRADEWVEEDGTRWVRVVDYKTGTKKLD----LKEVYCGL 943

Query: 903 --QLSIY 907
             Q+ +Y
Sbjct: 944 DCQMLLY 950


>gi|182626100|ref|ZP_02953861.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens D str. JGS1721]
 gi|177908621|gb|EDT71142.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens D str. JGS1721]
          Length = 763

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 33/209 (15%)

Query: 134 NAHYEEAKKKNCV----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A Y      N +    +D +DL        +   +      K      HI+IDE QD S
Sbjct: 491 LAEYMRENLANNIDKKIIDSDDLAAMLYLKFRIEGIEESSLLK------HIVIDEAQDYS 544

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           ++Q  V+  +              ++L  VGD  Q IYSF G             ++   
Sbjct: 545 MLQLYVMSMMAS-----------GKSLTIVGDIGQGIYSFKG---------INDWKEAIK 584

Query: 250 -NAGQKFSIIELPLSFRSTADILTVVDKVF--SIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               +      L  S+RST +I+   +KV                   +           
Sbjct: 585 LVYDENAEYKHLSQSYRSTVEIINYANKVLVKQNTYEEPAKPVLRHGMVPEEIKFNNAKE 644

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +  + +V +   +            D 
Sbjct: 645 FCERLDNIVKKVKDEGKTSIAIVGKTLDE 673


>gi|154685513|ref|YP_001420674.1| hypothetical protein RBAM_010790 [Bacillus amyloliquefaciens FZB42]
 gi|251764577|sp|A7Z367|ADDB_BACA2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|154351364|gb|ABS73443.1| AddB [Bacillus amyloliquefaciens FZB42]
          Length = 1166

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 65/699 (9%), Positives = 180/699 (25%), Gaps = 158/699 (22%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           Q  +       IA  I +++              + KD+ +L+R          L + + 
Sbjct: 316 QAQNRRAELEGIAREIQSLVRDG---------GYRYKDMAILIR---QPEDYKDLLKEVF 363

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL-FNFSE------ 450
            DY +    + +  +  H  I+ + +    +       +     K+ L F   +      
Sbjct: 364 ADYGLPYFIDGKASMQHHPLIEFIRSSLDVVKGNWRYEAVFRCAKTELLFPLDQPEQKIR 423

Query: 451 ---DDIFKICTQRHETETVYEYIQKFANCGISKFQH------------------------ 483
              D +   C         +   ++F                                  
Sbjct: 424 EQVDQLENYCIAYGIKGERWTSGERFVYRRFVSLDEDFAQTDQEIEMEHMLNETKEWMAA 483

Query: 484 -VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF--------------ISRFGNEVIDV 528
            ++K  + +       S  +   L L       +                ++   +  D 
Sbjct: 484 PLVKLQNRMKKAKTVQSMAEALYLFLEDTDVPLKLDRKRQRAEEAGNMIEAQQHGQAWDA 543

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPV 587
           + + L            SL      LE    ++  +      ++V +  +  ++   +  
Sbjct: 544 VIQLLEEFAGMMGEDEISLALFQQMLETGTESLHFSLIPPALDQVFVGNMDLSRMYGTSC 603

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            F++     V   +  +   +     +          S               +    + 
Sbjct: 604 TFVIGANDGVLPARPDENGVLSDDDREWLKAVGVELSS-------------AGRERLLDE 650

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           + L+Y+ ++  SD+L +      +  K        + + + F + +          ++++
Sbjct: 651 HFLIYMALSSPSDRLYVSYPIADAEGKTLLPSIVVNRLGELFPDHQEKLSAADPEQVSEE 710

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY------------ 755
           E + Y  +    +     +     +  +   +    ++ +  + +               
Sbjct: 711 EQLQYLVNKQVAQTYTASQLRLWTREYEISDVWWSAYNVLMKEPDHRRAKKLFSSLFFRN 770

Query: 756 ------------------ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
                               + S ++                  E         + G + 
Sbjct: 771 EAKRLERPVSRQLYGEHIKGSVSRMEAFNACQFSHFASHGLQLKERQFFKLDAPDIGQLF 830

Query: 787 HKLLQVIFTLPEHKRKNFITSY--------CTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
           H  L++I      ++  +                 +L P  + + LL S         + 
Sbjct: 831 HSSLKLISDRLREQKLEWRDLTKDQCRNFSYEAVERLAPKLQKEILLSSNRHFYVKEKLQ 890

Query: 839 T-------AMSCDSYSE--VSVSGKINCPKKDII--------------ISGRIDQISISQ 875
                    +S  + +   V V  ++       +              + GRID++  ++
Sbjct: 891 KIVTRVSGILSEHAKASGFVPVGLELGFGGSGPLPPLTFTLKNGCTMELVGRIDRVDKAE 950

Query: 876 QN----IFIFEYKTHHHVPQEIEHIPYTH---IAQLSIY 907
            +    + I +YK+          +   +     Q+  Y
Sbjct: 951 SSKGLLLRIVDYKS----SDRGLDLAEVYYGLALQMLTY 985


>gi|291276799|ref|YP_003516571.1| hypothetical protein HMU05710 [Helicobacter mustelae 12198]
 gi|290963993|emb|CBG39832.1| putative hypothetical protein [Helicobacter mustelae 12198]
          Length = 730

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 60/568 (10%), Positives = 143/568 (25%), Gaps = 92/568 (16%)

Query: 412 LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
           + +      L       +    DL    +L S      ++        R    +    + 
Sbjct: 192 VFNRGFFDFLDLALESNMHYALDLGQKKILHSHSTKIPQNPRLYAFHSRIAQVSF---VL 248

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI-------LGAKKGRQQFISRFGNE 524
             A   + + +  +  I       ++    D            +      Q FI     E
Sbjct: 249 DKALEWLKQGRENVALITPSEDFVKYLRVLDVHRNFNFAMGIDIKQTSYYQAFIQEEIGE 308

Query: 525 VIDVLD-----------EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA--------- 564
            +  L            EF        +  ++ L E+   +E +                
Sbjct: 309 NVTALRSLCEALLKEHPEFQQEIHLFHEEFFAGLDEIKGLMESFCIEQIWEFYQMELESL 368

Query: 565 --HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                   ++ +  +   +G+    + +VD   +   +     M +   +    GIP  +
Sbjct: 369 KLSDKKGGKIPVYGMLETRGMSFDAIIIVDFNEEKIFNFDDSDMFLNTKIRKSLGIPTLM 428

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                + +    LIK+ K+          YV   +      +    +            +
Sbjct: 429 DHKNLQKHYYYQLIKNAKEVDI------TYVKDDKPQALHFLSSIVDV-------LPGEF 475

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
           D     F       +      I +D                     +   L       ++
Sbjct: 476 DKSIFYFDKKPSYVEDDFFGEIPQDFVF------------------SASSLRTFFACKRR 517

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
            F      + +    + S                        ++H+ L+  +    +   
Sbjct: 518 FFLRYIKGLRDVSQRDFSAQ---------------------NLLHESLEKAYNAHPNDVI 556

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
                +     +       +     +  + +++           Y   +           
Sbjct: 557 GAQKEFYHLVHQASLQDPMQKFASELMVKNMDSFWKQEREHYQKYRFYAAEYGFEAEILK 616

Query: 862 IIISGRIDQISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
              SG+ID++   +++    + +YK    + Q I         QL +Y   L+     KS
Sbjct: 617 HKFSGKIDRVDYDEESASYVVVDYKFGKKIHQSINENTSD--FQLILYAMALES--EGKS 672

Query: 920 LVCLLIY-VSEPKVFIIPQNKLNKAFAE 946
           +   L+Y +   K   +   +  +   E
Sbjct: 673 VEACLVYDIRGEKKISVNLEEGREILQE 700


>gi|254470632|ref|ZP_05084035.1| double-strand break repair protein AddB [Pseudovibrio sp. JE062]
 gi|211959774|gb|EEA94971.1| double-strand break repair protein AddB [Pseudovibrio sp. JE062]
          Length = 1040

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 65/587 (11%), Positives = 154/587 (26%), Gaps = 63/587 (10%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
           S    LARR+A  ++       I  +   R ++    +VL        L       L   
Sbjct: 388 SPDRTLARRVASELTRW---GIIVDDTAGRPLEQTPPMVLAILTAKLALQGLDPVNLLAL 444

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
            K  +       +          AL R +L        +  L+  +    +  + K    
Sbjct: 445 LKHPLAF---LGMKAKEVRSAARALERGVLRGPHPRPGLSGLREAVEAAHDQAMEKADRP 501

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
                 + E      N  + + +  +  +  L+         D     + A        +
Sbjct: 502 VARWRKLVEEDWDAINTLLDRLEQALGPLEALLQNPNEIPVEDIIKTHVDAVLLLGADEN 561

Query: 520 RFGNE--VIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEV 572
               E    +             +   + L    +E              R+ +     +
Sbjct: 562 GSTEELFSGENGKALAETLTSLLEADAAGLCVPANEWPGVFGALITGGAVRSRTPADPRI 621

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            ++    A+     +V L       +  +      +   +    G  +  P+ K   +  
Sbjct: 622 HLLGPMEARLQRYDLVVLGGLNEGTWPQRTRNDPWLNRPMKGQIG--LDPPERKIGTSAH 679

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
             L                         ++++ +            R    +V  +  + 
Sbjct: 680 DFLWNLGA-------------------PEVVLSRSERVDGSPTVASRWLQRIVTLAGQSV 720

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           E+  + K          +    +   P   P  +     + +       +        I 
Sbjct: 721 EQQMRAKGKRYTEMAHVLDRSETPVRPAKRPEPKPPVEARPVQLSVTAIENLIRDPYLIY 780

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTK 811
             ++L    +D  G         +    ++G IIH  L   +        +  + +  T+
Sbjct: 781 ARHVLKLDEVDPIG--------GEPGAADKGNIIHDALANFLEDWDGPFDEKAVRALLTE 832

Query: 812 NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS-------------GKINCP 858
             +L+   +    + ++      P            E  V+              ++  P
Sbjct: 833 GGRLFRPLDAFPAIRALW----WPRFERIAEEFVAYEGEVAPKIYDRFLEEYGKVEMPRP 888

Query: 859 KKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           +++  ++GR D+I       + + +YKT        + +      QL
Sbjct: 889 ERNFTLTGRADRIDQMKDNTLRVVDYKTGQPP--SAKQVEALLSPQL 933


>gi|254457568|ref|ZP_05070996.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacterales
            bacterium GD 1]
 gi|207086360|gb|EDZ63644.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacterales
            bacterium GD 1]
          Length = 1646

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 23/133 (17%)

Query: 153  IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
            I   +++LK  +++          I  +++DE QD     +E I+++           S+
Sbjct: 1167 IALASNMLKNDEINLPY-------IQMLVLDEYQDVGKDTYEFIQAIYSKM-------SN 1212

Query: 213  PRTLFAVGDEKQSIYSFHG--AEPKRVLREKRINQ-------KRATNAGQKFSIIELPLS 263
             + + AVGD+ Q I +F    A+   +   K   +          T     +S  EL  +
Sbjct: 1213 DKKIIAVGDDDQCINNFGKDKADIVYIKHFKNDFEVIQEETKDLVTTEESNYSQYELSTN 1272

Query: 264  FRSTADILTVVDK 276
            +RS  +I+   + 
Sbjct: 1273 YRSKKNIIEYANS 1285


>gi|108759273|ref|YP_630123.1| hypothetical protein MXAN_1877 [Myxococcus xanthus DK 1622]
 gi|108463153|gb|ABF88338.1| conserved domain protein [Myxococcus xanthus DK 1622]
          Length = 391

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 74/212 (34%), Gaps = 25/212 (11%)

Query: 757 LNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
           L+ S +       L        +         + G  +H +L+ +  L E     ++   
Sbjct: 9   LSYSRLSRFEACPLSYQLHYLDKRTAEPGVPLSFGKALHAVLERL--LQEVIDTEYVGRL 66

Query: 809 CTKNAKLWPAKEYKN-------LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
             + A     +E+         +     R+L++ +       D    ++V  +   P   
Sbjct: 67  SEERALQLYREEWAASGLSGLDVFQQGLRILQDFVRQQ-GRVDCRDILAVEKEFRLPVGP 125

Query: 862 IIISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP-NKS 919
             + G ID++  +  + + + +YK++H +    E        QLS+Y    +  +P  K 
Sbjct: 126 FTVLGFIDRVDWVDDETVHVMDYKSNHQLFTREELDSS---LQLSLYALAARRMWPWAKK 182

Query: 920 LVCLLIYVSEPKVFI--IPQNKLNKAFAEIST 949
           +   +  +    +      + +L  A A + T
Sbjct: 183 VRLSMWMLRHGVLQETTRTEEQLEAALAYVET 214


>gi|295110066|emb|CBL24019.1| Superfamily I DNA and RNA helicases [Ruminococcus obeum A2-162]
          Length = 585

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 29/184 (15%)

Query: 87  QEINKKSPDLKEKLKKS-QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
           + +++ SP L   +  +  D+  K+ D        +   A                  N 
Sbjct: 127 KIVDEDSPLLNTFITSADSDKLKKVNDAVKASNKEELIAAL----DDYWDILNRKLITNH 182

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
           V+ +  ++I+   LL++  +S++      Q    I+IDE QDT+L+ + +I+ L  +   
Sbjct: 183 VITYNGILISAIKLLRETQISSF----YKQYYQMIIIDEFQDTNLLGYLLIKKLIGN--- 235

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                     +  +GD+ Q IY F GA                         I+   ++R
Sbjct: 236 --------NMIIFLGDDVQKIYGFLGAVNGIFNLIIETYPVI---------EIKFCNNYR 278

Query: 266 STAD 269
              +
Sbjct: 279 FREN 282



 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 63/233 (27%), Gaps = 17/233 (7%)

Query: 469 YIQKFANCGISKFQHVIKY-IHELIHIAQFCSPHDFFTLILGAKKGRQQ--FISRFGNEV 525
           Y          ++       + E  +     +        L A   R+   +       +
Sbjct: 362 YFNALFKETDPEYISFYNIALEEFHNNVLGKAVQRNLKNCLLAVDARRNEIYQQESKKYI 421

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            + + + L       +    + ++    ++       +K        +V + T+H AKGL
Sbjct: 422 FESMYKLLEILFVESKKVSGTSRDKYDYIDFILGNKGLKHMMEFVDEQVVLTTIHAAKGL 481

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E   V +       F   H+                          +          K  
Sbjct: 482 EWEYVIIPRLNGFAFPSSHM------------CRSCKEANSCNEGFDYCKFTYAQSLKKA 529

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            +E   +LYVG+TRA   +    ++  +    S   +    +      D   +
Sbjct: 530 FKEELSILYVGITRAKKNVFFTVNTGANKWNHSKTTSCLLNLEGLILEDYEWE 582


>gi|316931472|ref|YP_004106454.1| double-strand break repair protein AddB [Rhodopseudomonas palustris
           DX-1]
 gi|315599186|gb|ADU41721.1| double-strand break repair protein AddB [Rhodopseudomonas palustris
           DX-1]
          Length = 1049

 Score = 71.1 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 58/523 (11%), Positives = 131/523 (25%), Gaps = 59/523 (11%)

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
           R    DH   + +  L   +L      +    L    F     ++ K+           E
Sbjct: 449 RLGRADHGWRRAIETLELALLRGPRPPAGCHGLAKE-FAIFRIELAKLKRGEASALHPSE 507

Query: 469 YIQKFANCGISKFQHVIKYIHELIH--IAQFCSPHDFFTLILGAKKGRQQFISRF----- 521
              + +   +   Q +I  +   +        SP D   +    +   +   +       
Sbjct: 508 PRTRLSEPSLDDAQALIAQLEAALAPLETFGPSPLDLCEIGARHRDVLKALTTDHEGIAE 567

Query: 522 ---GNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMT 576
              G +   +L  F +       +          E+    +   + R        +RI  
Sbjct: 568 AFEGPQGSALLRAFDDLAAVGPASGVLVAARDYGEVFETAFGDRVVRRPELAEAPIRIYG 627

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
              A+  +   V L      V+         +   +  + G+ +   +     +  +  +
Sbjct: 628 PLEARLTQQDRVVLGGLVEGVWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQAL 687

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                                  D++ I   +          R  + +   +  +  +  
Sbjct: 688 GA---------------------DEVFIAHAAKVGGAPAVASRFLHRLEAVAGEDRWKAM 726

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM-DEQKIPKKLFSPIKNDINEPY 755
           K +    ++    +    S               + L      I   L  P         
Sbjct: 727 KARGQIYLDYTHELDRPESVTPIAQPAPRPPRIARPLKLPVTAIEDWLRDPYTIYAKYIL 786

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
            L+P          L+ +       +RG  IH  L       +    +   +   +  + 
Sbjct: 787 RLSP----------LDPVDMPLSGADRGSAIHAALGEFTERYQDAMPDDPAAALRQIGQK 836

Query: 816 WPAKEYKNLLLSITRLLENPMMTTAMSC----------DSYSEVSVSGKINCPKK-DIII 864
             A    +             + T                 +E   +  I    + +  +
Sbjct: 837 HFAPLMDHAEARALWWPRFLRIATWFGAWEQQRRTGVVQVQAERRGTLMIPLGGERNFEL 896

Query: 865 SGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           S R D+I      +  I +YKT H      + +      QL++
Sbjct: 897 SARADRIERRDDGSYAILDYKTGHPP--TGKQVRMGLSPQLTL 937


>gi|329117385|ref|ZP_08246102.1| ATP-dependent nuclease subunit B [Streptococcus parauberis NCFD
           2020]
 gi|326907790|gb|EGE54704.1| ATP-dependent nuclease subunit B [Streptococcus parauberis NCFD
           2020]
          Length = 1088

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 87/642 (13%), Positives = 175/642 (27%), Gaps = 98/642 (15%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             IA  I   +              + KDILVL+    D          + + Y+I    
Sbjct: 309 EHIAKAIRQKLYQGH----------RYKDILVLL---GDVEAYQAQIGPVFDKYEIPYYL 355

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR------ 460
                +  H  ++ + +L R           V +LKS LF   E D              
Sbjct: 356 GRSEAILHHPLVQFVESLERCRSYNWRREDIVNLLKSGLFGHFEKDWVDQFEAYVEFADI 415

Query: 461 ----------HETETVYEYIQKFANCGISKFQHV-IKYIHELI--HIAQFCSPHDFFTLI 507
                         T      +F    +++ +      + +L      +  S  +    +
Sbjct: 416 NGYTKFSRPFEVNSTDGNNHFRFDLEIVNQIREFSFSNLAQLFKSQKQKGLSLLEKLMTL 475

Query: 508 LGAKKGRQQFISRFGNEVI-------DVLDEFLNFTLRNE---QNSYSSLQELISEL-EQ 556
           L A    + F      +         +V   F++     +    N   +L + +S L   
Sbjct: 476 LNAVDLPKNFQEMMTVQDENEQERDQEVWKTFVSILEDFQLVFANEKLTLDQTLSLLKMA 535

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL---- 612
                 RA  A  + V + +    +    P V  +      F  K      I        
Sbjct: 536 MQAANYRAVPATLDVVTVKSYDLVEPHSKPFVMALGLTQNNFPKKTKNTSLISDQERSQT 595

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY--------VGMTRASDQLII 664
           N+D         +   N   +        +   E   L Y          M+     +  
Sbjct: 596 NEDQDYFHRFDLASQDNAKKNHFTALSLFNAATEELLLSYPLMLNESSEDMSTYLKSVHQ 655

Query: 665 CKHSNTSNEKKSNQRTWYD------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                    K +  RT  D      ++      +    + +L         +   +    
Sbjct: 656 YGIPIEEKGKNNLSRTDLDIGNYKSLLSQLVEINRGAIEGELQEEDKNFWTVMLRYLKKR 715

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS--- 775
             N  L+  +    L  +    + +          P  L+ S +        +  L    
Sbjct: 716 LANENLQFPQAKNHLETKAISEEVMSLRYPEQK--PMSLSTSALTVFFDNQYKYFLQYVL 773

Query: 776 --------DNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITS-------------YCTKN 812
                          G  +HK+ + I     P    +    +             Y    
Sbjct: 774 GLQELQTIHPDARQHGTYLHKVFETIMGDHRPIDFDQKVEDALNVTRQNNQFKHFYLEDA 833

Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
              +  +  +++  S   +L+       +S +   E+ ++  +       ++ G+ID+I 
Sbjct: 834 QGRYSLQVLEDIAKSTAGILKLNQNLKVLSQEEAFELPITQSL-------LVKGKIDRID 886

Query: 873 IS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                +I I +YK+  +   +I        +QL  Y   L++
Sbjct: 887 QLVDDSIGIVDYKSSANKF-DIGCFYNGLNSQLVTYLAALRE 927


>gi|257054727|ref|YP_003132559.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017]
 gi|256584599|gb|ACU95732.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017]
          Length = 286

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 14/186 (7%)

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
           + + + K   + +    + P     + +D        S          G +IH  L+ +F
Sbjct: 11  EPRPLIKVTPARLSLYDDCPRRFRMTYLDQ----PAPSRTGPWAHTTLGAVIHNALRELF 66

Query: 795 TLPE----HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN---PMMTTAMSCDSYS 847
            LP      +R   + S   ++     A++      +  R   +        A       
Sbjct: 67  ALPASERTPERAEALVSRHWRSGGFADAEQVARYAEAARRWTADYVERHGADAEPVGVER 126

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            VS +   +     +I+ GR D+I      + + +YKT    P +           L++Y
Sbjct: 127 WVSATVGSDPASPSLIVEGRADRIDAHDGELVVIDYKTGRTPPSDEHARRSRA---LALY 183

Query: 908 EKILKD 913
                 
Sbjct: 184 AIAASR 189


>gi|229918201|ref|YP_002886847.1| ATP-dependent nuclease subunit B [Exiguobacterium sp. AT1b]
 gi|229469630|gb|ACQ71402.1| ATP-dependent nuclease subunit B [Exiguobacterium sp. AT1b]
          Length = 1145

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 81/758 (10%), Positives = 196/758 (25%), Gaps = 148/758 (19%)

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS-ASILARRIAYTISNMIGTDTIF 363
               +L++ V           + ++          S     L   +  T+        + 
Sbjct: 259 PSRDELYDTVYRYTHPSLRYLEATFDQLTAEPYTGSENRIDLHAAVDRTVEVEAAVREVI 318

Query: 364 SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
              ++   + +DI ++ R   +      L         +    ++R  + DH  ++ L A
Sbjct: 319 RLTREEGYRYRDIALVSRSLDE---YGDLESQALQKMGLPYFLDERQPMLDHPLVELLKA 375

Query: 424 LGRFILSQEDDLSFVCMLKSPL-------FNFSEDDIFKICTQRHETETVYEYIQKFANC 476
                L    + S    LK+ L          S D +     +R      +    +    
Sbjct: 376 TIEIALRGYREESVFRALKTELVVLDPVHRRTSVDRLEAFVIERGIKHYHWHDEWQLRRR 435

Query: 477 GISKFQ-----------------HVIKYIHELI--------HIAQFCSPHDFFTLI---- 507
              + +                  VI+    L+          A   + + F   +    
Sbjct: 436 SGEEARLTSEELDIEVELNRSRERVIETFDPLLSDLKQAKTMQAYTHAMYAFLERVGVSD 495

Query: 508 ------LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
                   A +  +   +R   +V D +   L            S    +  ++    ++
Sbjct: 496 CLTHWRDEAIEEAELLEAREHTQVWDAVLHLLEQLEAAAPEETLSTDLFLQMMDTGLDSL 555

Query: 562 KRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
           + A      +++ I      + ++  VVFL+            +   +     D      
Sbjct: 556 RYALIPPSLDQLTITDYVRGRLIDKKVVFLLGANEDQIPLVTTQSKLLTDQDLDFMHENG 615

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
                               +   ++    LY  +T  S++L I         K      
Sbjct: 616 LRAGK-------------ATEHLFDDETYYLYKAVTAPSERLYISYALVDRTGKAVQPAR 662

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
           +   +    H +               +  A+  + +          + + +    Q + 
Sbjct: 663 FIADLKARLHQNVIKTHFAEAGEHRPRDQFAFLTNVNQTAAVTALELQRLSRHYPIQDMW 722

Query: 741 KKLFSPIKNDINEPYIL-------------------------------NPSTIDTKGKTN 769
             +++ +    +    L                               + S ++T     
Sbjct: 723 FAVYNELLKHPDGRERLQLLTSALFYQNIPESLDDRVAKSLYTPSIRASVSRLETFQACP 782

Query: 770 L-----------ESLLSDNQTFNRGLIIHKLLQVIF-----------TLPEHKRKNFITS 807
                       E  L   +  + G + H+ ++ +             +   +  +    
Sbjct: 783 FKHFASYGLRLKERRLYRLEAPDIGNLYHRTIEHMSQTVKMDGKEWRDVTPDECSHLAEQ 842

Query: 808 YCT------KNAKLWPAKEYKNLLLSITRL----------------LENPMMTTAMSCDS 845
                    ++A L  +  Y  L   +T +                 +      A     
Sbjct: 843 AVELVTPEIQHAILMSSNRYAYLKKKLTDVVSKTAEVLIEQSKRDGFDPEAFELAFGSGQ 902

Query: 846 YSEVSVSGKINCPKKDIIISGRIDQI---SISQQNIF-IFEYKTHHHVPQEIEHIPYTHI 901
           +  VS +       +   + GRID++    +  Q    I +YK+      +   I Y   
Sbjct: 903 FPPVSFTLSNGATCE---LVGRIDRVDTAMVHDQLYVRIVDYKSSKR-EVDFAEIYYGLA 958

Query: 902 AQLSIYEKIL---KDSYPNKSL--VCLLIYVSEPKVFI 934
            Q+ IY K+L    + +  +++     L +     +  
Sbjct: 959 MQMLIYLKVLIEQAEVWTKENVAPAAALYFHVHRPLVP 996


>gi|325261822|ref|ZP_08128560.1| putative ATP-dependent nuclease subunit B [Clostridium sp. D5]
 gi|324033276|gb|EGB94553.1| putative ATP-dependent nuclease subunit B [Clostridium sp. D5]
          Length = 1120

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 67/655 (10%), Positives = 190/655 (29%), Gaps = 85/655 (12%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  +A  I +++           + ++ +DI V+     D            + Y I
Sbjct: 319 KQEAEYVASGIRHLVRE---------KGLRYRDIAVIA---SDMDAYAVCMEKACDTYGI 366

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--- 459
            +  + +  +  +  ++ + +L           S    L++ +  F+  +I ++      
Sbjct: 367 PIFMDHKKSILLNAFVEYVRSLLAMAEQNFSYESVFRYLRTGMAGFTRREIDQMENYVLA 426

Query: 460 ---RHETETVYEYIQKFANCGISKFQH-------VIKYIHELIHIAQFCS---------P 500
              +   +    ++++ +                 ++ +  L+++ +  S          
Sbjct: 427 LGLKGYKKWQAAWVRRTSGMEEEALSELNGLRVRFVEQLDALVYVLKQPSKTVKDVTAAV 486

Query: 501 HDFFT-----------LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           +DF              +   ++G       +  +V  +  E  +  +    +   SL+E
Sbjct: 487 YDFLAKQQAQVRLKEMEVRFQEQGELALAKEY-AQVYRITIELFDKFVELLGDERISLKE 545

Query: 550 LISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK-HIKKMH 607
               L+      K        ++V I  V   +  +   +F V     +         + 
Sbjct: 546 YCELLDAGMEEAKVGVIPPSLDQVVIGDVERTRLKDIKALFFVGANDTLLPGSLGQGGLL 605

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK- 666
                    G  I +         +     ++  +   +Y  + +  ++     L     
Sbjct: 606 SERDREQFAGQKISLSPGAKEKTYIQKFYLYMNLTKPTKYLSISFSRVSAEGKTLRPAYL 665

Query: 667 --------HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                         ++++      ++   +  N       +    +N++    Y W   H
Sbjct: 666 VQDLRRLFPLLKIRDEETKGLAQTELTEKTAMNYLVQGLRERALGVNEEWKELYTWYVKH 725

Query: 719 PENTPLEREET----IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL---E 771
              T    +        + + +           +  +                  L   +
Sbjct: 726 AAGTEKILDAAFFKKTPERLTKTAAEMMYGDASRFSVTRLERFASCAYAHFLTYGLRLSD 785

Query: 772 SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
                 +  + G I H+ ++      +  + ++I       A+L      ++++     +
Sbjct: 786 REAYQFEAMDLGNIAHQSMERFAKKADINQVSWIGMPEEMRAQLIEESVEESIVDYGNTV 845

Query: 832 LEN--------PMMTTAMSCDSYS--EVSVSGKINCPKKDIII-SGRIDQI--SISQQNI 878
           L +          +   +    ++  E    G       ++   SG+ID+I     ++ I
Sbjct: 846 LYSTARNEYMITRIKKLIHRSVWALTEQLRKGDFVPSGYEMKFGSGKIDRIDTCEDEEKI 905

Query: 879 F--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS----YPNKSLV-CLLIY 926
           +  + +YKT      +I    +    QL +Y     D     +P + +    + Y
Sbjct: 906 YVKVTDYKTGSRSF-DITAFYHGLQMQLPVYLNAAMDMEQKKHPGQEIQPAGIFY 959


>gi|218897837|ref|YP_002446248.1| UvrD/Rep helicase family protein [Bacillus cereus G9842]
 gi|218546033|gb|ACK98427.1| UvrD/Rep helicase family protein [Bacillus cereus G9842]
          Length = 691

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 59/277 (21%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETG--NPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQ 76
           + W      V DI K++ +  +         K    +++  + +        L  +  T 
Sbjct: 329 EAWDKAIIPVEDIKKWMQVEYKHYPLKKRREKLVGRMKRWIEIE--------LKKYGETN 380

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH 136
           +    K   T+ +N               +   +    +  K  +         + L   
Sbjct: 381 EKKLLKKEATKRLNTYMK--------FWPKMSPLSLYSSILKSKEILEVLP---EELVKE 429

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI-----DQEINHILIDEVQDTSLI 191
            E++ +K  V             ++      +I ++I      Q+ +H++IDE QD    
Sbjct: 430 TEKSCRKKEVY------------VEDLPALIYIHHRITGIEIGQKFHHVVIDEAQDFPPF 477

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q  V++ +T              +   +GD  Q+IY + G   +     K + Q+     
Sbjct: 478 QVYVLKEITL-----------GNSFTILGDLSQAIYDYQG--IEDWSAFKEVFQETGY-- 522

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
                  EL  S+RST +I+   +++    E   GL+
Sbjct: 523 ------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|254831296|ref|ZP_05235951.1| hypothetical protein Lmon1_08057 [Listeria monocytogenes 10403S]
          Length = 1157

 Score = 71.1 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 89/701 (12%), Positives = 184/701 (26%), Gaps = 160/701 (22%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           Q ++       IA  I  +               + +DI +L R   D  ++        
Sbjct: 307 QANNRRAEIEGIAREIRQLALNG----------YRYRDIAILTRNLGDYDVLCETVMEA- 355

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
             Y I    + +  +  H  I+ + +    IL + + +  F  +     F+ +E      
Sbjct: 356 --YNIPTFIDKKRAMAKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNR 413

Query: 453 --------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIKY---IHELIHIA 495
                         I        E + +Y  I+  +   + +    I     I+E+ ++ 
Sbjct: 414 RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLI 473

Query: 496 QF-CSPHDF--------FTLILGAKKGRQQF--------------------ISRFGNEVI 526
               S  +             L      +Q                     ++R   +  
Sbjct: 474 VNPLSTLELNLRKAKTGMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAW 533

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             +   L+  +         L      +              + ++V +  +  AK L+ 
Sbjct: 534 SSISALLDEFVEVLGEETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDM 593

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            V+F +     V   +   K        D         +  ++NNI              
Sbjct: 594 KVIFAIGMNDGVMPLRQKDKGIFSDQDRDALRAEDSKLKPSAKNNIG------------- 640

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E + L Y  ++  SD+L +   +     K  ++  +   +   F+       +   + ++
Sbjct: 641 EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFNELNESVYLTDPSLLS 700

Query: 706 KDE-------------------------------WIAYEWSTHHPENTPLEREETIKQLM 734
             E                               W     S    E      ++ +  L 
Sbjct: 701 DAEQSSYIRSKQATLGLLTSQLQMYKRGYTLSSVWWDAYNSYFENEKESTMAKQVLSSLY 760

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
            E K      +  KN   E    + S ++                  E      Q  + G
Sbjct: 761 YENKTKPLQETTAKNLFGETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQLQAVDMG 820

Query: 784 LIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
            I H  ++ I    +       N     C + AKL        +   I   L +  M   
Sbjct: 821 EIFHGAMEWISAELKRNNLDWGNLKEEECKQMAKLAMTFLAPKIQHEIL--LSSKRMEYI 878

Query: 841 M------------------SCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
                                 ++  V +                     ++++ GRID+
Sbjct: 879 QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDR 938

Query: 871 I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           I  +       + I +YK+  H    +  + Y    Q+  Y
Sbjct: 939 IDMAEQDDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTY 978


>gi|121582824|ref|YP_973266.1| superfamily I DNA/RNA helicase-like protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120596086|gb|ABM39524.1| superfamily I DNA and RNA helicases-like protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 555

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 26/108 (24%)

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             +      ++++DE QDT+ + W+++R                  L  VGD  QSIY F
Sbjct: 183 LSQPRLSYPYLMLDEAQDTNPVTWDIMRR-------------QSSPLVIVGDPYQSIYQF 229

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            GA                    Q      L  SFR    +  + + +
Sbjct: 230 RGACNAMTDA-------------QAVQTFPLTQSFRFGQYVAEIANAL 264


>gi|115375892|ref|ZP_01463141.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310819817|ref|YP_003952175.1| hypothetical protein STAUR_2544 [Stigmatella aurantiaca DW4/3-1]
 gi|115367070|gb|EAU66056.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392889|gb|ADO70348.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 391

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 70/210 (33%), Gaps = 21/210 (10%)

Query: 757 LNPSTIDTKGKTNLESLL--------SDNQTFNRGLIIHKLLQVIFTLPEHKRKN---FI 805
           L+ S +       L   L              + G  +H +L+ +               
Sbjct: 9   LSYSRLSRFEACPLSYRLHYLDKHTAEPGVPLSFGKALHAVLERLLQEVIDTEYAGPLSE 68

Query: 806 TSYCTKNAKLWPAKEYK--NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII 863
                   + W A      +L      +L++ +       DS   ++V  +   P     
Sbjct: 69  ERALQLYREEWAASGLSGLDLFQQGLGILQDFVRQQ-GRVDSRDILAVEKEFRLPVGPFT 127

Query: 864 ISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP-NKSLV 921
           + G ID++  +  + + + +YK++H +    E        QLS+Y    +  +P  K + 
Sbjct: 128 VLGFIDRVDWVDDETVHVMDYKSNHQLFTREELDSS---LQLSLYALAARRMWPWAKKVR 184

Query: 922 CLLIYVSEP--KVFIIPQNKLNKAFAEIST 949
             +  +     +     + +L+ A A + T
Sbjct: 185 LSMWMLRHGVRQETTRTEEQLDAALAYVET 214


>gi|169342887|ref|ZP_02863918.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens C str. JGS1495]
 gi|169299144|gb|EDS81216.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens C str. JGS1495]
          Length = 763

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 33/209 (15%)

Query: 134 NAHYEEAKKKNCV----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A Y      N +    +D +DL        +   +      K      HI+IDE QD S
Sbjct: 491 LAEYMRENLANNIDKKIIDSDDLAAMLYLKFRIEGIEESSLLK------HIVIDEAQDYS 544

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           ++Q  V+  +              ++L  VGD  Q IYSF G             ++   
Sbjct: 545 MLQLYVMSMMAS-----------GKSLTIVGDIGQGIYSFKG---------INDWKEAIK 584

Query: 250 -NAGQKFSIIELPLSFRSTADILTVVDKVF--SIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               +      L  S+RST +I+   +KV                   +           
Sbjct: 585 LVYDENAEYKHLSQSYRSTVEIINYANKVLVKQNTYEEPAKPVLRHGMVPEEIEFNNAKE 644

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +  + +V +   +            D 
Sbjct: 645 FCERLDCIVKKVKDEGKTSIAIVGKTLDE 673


>gi|321314787|ref|YP_004207074.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
           subtilis BSn5]
 gi|320021061|gb|ADV96047.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
           subtilis BSn5]
          Length = 1166

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/726 (8%), Positives = 186/726 (25%), Gaps = 158/726 (21%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR--IAYTISNMIGTDTIFSNGKKR 369
            ++              +    ++L    +A+  A    IA  I  ++           +
Sbjct: 288 PELAHLEAQYEARPAVPYAEKQEALTVMQAANRRAELEGIAREIHALVRE---------K 338

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + KD+ +L R          + + +  DY+I    + +  + +H  I+ + +    + 
Sbjct: 339 GYRYKDVAILAR---QPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSLDVLK 395

Query: 430 SQEDDLSFVCMLKSPLF---------------------------NFSEDDIFKICTQRHE 462
                 +    +K+ L                                    +   +R  
Sbjct: 396 GNWRYEAVFRCVKTELLFPLNEPKAKVREQVDQLENYCIAYGIKGDRWTKGDRFQYRRFV 455

Query: 463 TETVYEYIQKFANCGISKFQHVIKYI--------HELIHIAQFCSPHDFFTLILGAKKGR 514
           +               +       +I          +          +     L      
Sbjct: 456 SLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQLQKRMKKAKTVQEKAEALYRYLEETDVP 515

Query: 515 QQF--------------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            +                ++   +  D + + L   +    +   SL      +E    +
Sbjct: 516 LKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEISLDLFQQMIEAGAES 575

Query: 561 IKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
           +  +      ++V +  +  ++   +   F++     V   +  +   +     +     
Sbjct: 576 LTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTI 635

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                S               +    + + L+Y+  +  SD+L +      +  K     
Sbjct: 636 GVELSSGG-------------RERLLDEHFLIYMAFSSPSDRLYVSYPIADAEGKTLLPS 682

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                + + F   +          ++ +E + Y  +    ++    +     +  D   +
Sbjct: 683 MIVKRLEELFPYHKERLLTNEPEQVSDEEQLMYVVNQSVAQSFTASQLRLWTREYDISDV 742

Query: 740 PKKLFSPIKNDINEPYI------------------------------LNPSTIDTKGKTN 769
               ++ + ++ +                                   + S ++T     
Sbjct: 743 WWSTYNVLMSEPDRLQSKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETFNACP 802

Query: 770 L-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKL 815
                       E      +  + G + H  L++I           ++     C   +  
Sbjct: 803 FSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLREQKLDWRDLTKEQCELFSYD 862

Query: 816 WPAKEYKNLLLSITRLLEN--------------PMMTTAMSCDSYSE--VSVSGKINCPK 859
              +    L   I   L +                ++  +S  + +   V +  ++    
Sbjct: 863 AVERLAPKLQKEIL--LSSNRHYYVKEKLQKIVTRVSGILSEHAKASGFVPIGLELGFGG 920

Query: 860 KDII--------------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHI 901
           K  +              + GRID++  ++ +    + I +YK+      ++  + Y   
Sbjct: 921 KGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS-DKGLDLAEVYYGLA 979

Query: 902 AQLSIY 907
            Q+  Y
Sbjct: 980 LQMLTY 985


>gi|282600916|ref|ZP_05980119.2| putative ATP-dependent nuclease subunit B [Subdoligranulum
           variabile DSM 15176]
 gi|282570837|gb|EFB76372.1| putative ATP-dependent nuclease subunit B [Subdoligranulum
           variabile DSM 15176]
          Length = 1094

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 68/650 (10%), Positives = 160/650 (24%), Gaps = 127/650 (19%)

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            +    + V+ R   D        R+      I +  ++     +    + + A+     
Sbjct: 309 GMPYHRMAVICR---DAAQYLGPLRYEFRLQNIPLFCDEATTPENTAPARAVHAVLDLAR 365

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--------------------------RHET 463
           S     + + +LK+ L N  E     +                             R E 
Sbjct: 366 SGVSSRTVLRLLKTGLVNLPERQQTALENYAYTWSLKAADWRAPFTRSAAGYADVERAED 425

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG- 522
               E  +      + + Q  +  +      A     + F    LGA+            
Sbjct: 426 VRTREEAEAARVFLMERIQKFLPRVKNAGAAALTKQVYLFLQS-LGAEDTLNALAETLRG 484

Query: 523 ----NEVIDVLDE------FLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNE 571
                E  +VL E       LN   +          +           T       + + 
Sbjct: 485 QGRMPEADEVLREWNVVMGLLNQLAQLLGEEELPPADYAELFTLLLRTTDMGHIPQSLDS 544

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V + T    +  E+  VF+V      F                     +      +    
Sbjct: 545 VILTTAGRMRLPETDAVFVVGLLEGEFPKTP------------GDQGLLTHADRDAMIRQ 592

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
            ++L    +     E     Y  MT A   L +        E  +   +    V      
Sbjct: 593 GAELPDCFENKVLREGVC-FYKAMTAARSFLWLSWPGAAHAEDDTPASSALAPVRRLLQV 651

Query: 692 DERVKKIKLTNSIN----------------KDEWIAYEWSTHHPENTPLERE--ETIKQL 733
                      +                  + E  A   +    E TP      E +++ 
Sbjct: 652 PFAGPSTAELGASPAAALDILGVISQQPGREGEGEALRAALEDAEGTPQSAPGYEAVRRA 711

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD-NQTFNR---------- 782
            ++ +   +    ++  +     ++P+  +          +    +   R          
Sbjct: 712 REKAEPAVRDTGALEKLLGPGLRVSPTRFEKYQTCPFGYFMQFVLRAAPRQKAELAPNIS 771

Query: 783 GLIIHKLLQVIFTLP----EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-- 836
           G + H +L+          +      + +   +    +       + + +  L+E     
Sbjct: 772 GTLTHWVLENALRRQGAAFKDLTAEELQALVEELVAEYTQANLPGITVRMQYLIERIRRN 831

Query: 837 -------MTTAMSCDSYSEVSVSGKINCPKKD-------------------IIISGRIDQ 870
                  +   +    +  V+   +I+    +                   + I G +D+
Sbjct: 832 LVGLLGFIQRDLQQSGFQPVAFELRIDDRPGEDPEAPRIDPVELKDGAGHTVRIVGTVDR 891

Query: 871 ISI----SQQNIFIFEYKTHHHVPQEIEHIPYTHIA---QLSIYEKILKD 913
           +       +  + + +YKT      +   +   +     Q+ +Y   L+ 
Sbjct: 892 VDAMPLGERTYLRVVDYKTG----GKDFQLKEVYCGLDCQMLLYLFTLER 937


>gi|18310601|ref|NP_562535.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens str. 13]
 gi|168213588|ref|ZP_02639213.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens CPE str. F4969]
 gi|18145282|dbj|BAB81325.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170714875|gb|EDT27057.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens CPE str. F4969]
          Length = 763

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 33/209 (15%)

Query: 134 NAHYEEAKKKNCV----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A Y      N +    +D +DL        +   +      K      HI+IDE QD S
Sbjct: 491 LAEYMRENLANNIDKKIIDSDDLAAMLYLKFRIEGIEESSLLK------HIVIDEAQDYS 544

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           ++Q  V+  +              ++L  VGD  Q IYSF G             ++   
Sbjct: 545 MLQLYVMSMMAS-----------GKSLTIVGDIGQGIYSFKG---------INDWKEAIK 584

Query: 250 -NAGQKFSIIELPLSFRSTADILTVVDKVF--SIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               +      L  S+RST +I+   +KV                   +           
Sbjct: 585 LVYDENAEYKHLSQSYRSTVEIINYANKVLVKQNTYEEPAKPVLRHGMVPEEIEFNNAKE 644

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +  +++V +   +            D 
Sbjct: 645 FCERLDRIVKKVKDEGKTSIAIVGKTLDE 673


>gi|254454814|ref|ZP_05068251.1| hypothetical protein OA238_5446 [Octadecabacter antarcticus 238]
 gi|198269220|gb|EDY93490.1| hypothetical protein OA238_5446 [Octadecabacter antarcticus 238]
          Length = 886

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/573 (11%), Positives = 152/573 (26%), Gaps = 58/573 (10%)

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           + +  +DI +LV             R    +  I + G         +A + L+ L    
Sbjct: 228 QNVSPEDIGLLVPN---EVGYFAQLRRAFANVGIPLSGLPTQPSRRDIAGETLLQLLLCF 284

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
            +    ++   +  SPL  +  +   ++  +  +        +          Q   K +
Sbjct: 285 QAPAPAMALASLYISPLLPWPAETGLQLSREVMKGRFEPFAARSLTGRP----QRFYKLV 340

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
              I  +           +L A +   Q ++    E+ + +  F +           S  
Sbjct: 341 RSNIEQSPLG--------VLQALEQAAQLLTDVT-ELREDVAAFRSKLGTMRAQLAQSRS 391

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP---VVFLVDTGSQVFSHKHIKK 605
              + L +         S +   V  ++V T   +       +  +      +       
Sbjct: 392 LDWAALYRVATPTTPKPSPSEAFVEGVSVFTEATMPWRPARHLIAMGMSGNRWPRAVSAS 451

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
              +                  +  +  +          E+  R L       +    + 
Sbjct: 452 PLFLDGELQLL---------HEKTGLRVETRGDALARRLEKLRRQLLCASGSVTLLRPVF 502

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS---------- 715
             + +     +        V +     E  + +         +   +E            
Sbjct: 503 APNGSRQAPAAALSLVARTVGNGDKGTEGAEVLIHDLRALPRDRWPFEHRVVVASMDALT 562

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
           +  P++  L     + +         +  SP + +      L  S +   G   +     
Sbjct: 563 SAVPDDGVLRLGHDLLRRRLLDDGRMRPQSPSRLETLMVSPLAWS-LSVFGAEPVTWAPD 621

Query: 776 DNQTFNRGLIIHKLLQVIFTLP-------------EHKRKNFITSYCTKNAKLWPAKEYK 822
                  G I H +L+ +F                     + I  Y     +   A E +
Sbjct: 622 GLNVMVAGTIAHDVLEFLFPKDVALPDHDQIEAEVPELLASAIRKYAPFLQRSIWAVERE 681

Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIF 881
            LL  I     +    T    D+   +     +      I++ GR D +       + + 
Sbjct: 682 GLLRDIRTA-AHAWRNTLAGLDARV-IDNEIGLQGEALGILLRGRADCLLQLADGSLLVV 739

Query: 882 EY-KTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           ++ K+    P+    +      QL +Y ++LK 
Sbjct: 740 DHKKSG--TPKRRARLEAGWDLQLGLYREMLKR 770


>gi|313763497|gb|EFS34861.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1]
          Length = 751

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 111/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 663

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +V+   R      + +  F  +   I +   D     D 
Sbjct: 664 APVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|225174782|ref|ZP_03728780.1| ATP-dependent nuclease subunit B [Dethiobacter alkaliphilus AHT 1]
 gi|225169909|gb|EEG78705.1| ATP-dependent nuclease subunit B [Dethiobacter alkaliphilus AHT 1]
          Length = 1147

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 71/686 (10%), Positives = 173/686 (25%), Gaps = 143/686 (20%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +A  I +++           +  + +DI +++R   D      L   +  +Y+I
Sbjct: 318 RAEVEAVACDILHLVRE---------KGWRFRDIGMILR---DFSRYHDLVAAIFQEYQI 365

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI-CTQRH 461
               ++R   T H  ++ L +      +       + +LK+ L   S +   K+    R 
Sbjct: 366 PFFVDERRSATHHPLVEFLRSALDAAQANFALEPVLQLLKTDLLPISRETADKLENYARA 425

Query: 462 ETETVYEYIQKFANCGISKFQ------HVIKYIHELIHIAQFCSPH-------------- 501
                  ++         +           +    L  I +  +                
Sbjct: 426 HGIRGSRWLDGKPWSFRLRLSLDESRDTATETDAHLEEINEGKTVFGRIFTPFNRQVGGS 485

Query: 502 --------DFFTLILGAKKGRQQFISRFGNEV-----------IDVLDEFLNFTLRNEQN 542
                        +L +     Q  +    +               + E L   +     
Sbjct: 486 ARPAADFCRAIWALLESTDAELQLQNWSEEDANPATAAQHRQVWSGVVELLEQIVSTLGE 545

Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
              SLQE    L+     +         ++V + +V  ++       +++      F  +
Sbjct: 546 RQISLQEFSQILQAGLEALTLGLVPAGLDQVIVGSVERSRQPRLRAAYVLGLSEGDFPAR 605

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             ++  +     +                     +   K+        L Y+ +TR+S+ 
Sbjct: 606 LKEEGLLADEEREALQENGVD-------------LAVTKRQKLFHEQYLSYIALTRSSEY 652

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L +         K       ++ + ++F  ++        +S      +A    +     
Sbjct: 653 LWVSCPLADEEGKAKRPSALFNRLRETFPYNDVHFFGNTPDSKEDLHALAGAEKSAAALL 712

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESL-------- 773
                      + D           I    N   +L PS  +      L +         
Sbjct: 713 LQAGGVAAGGAMSDFWAAAYNEALSIPQVYNRMRMLWPSLTERNHIAPLPAETVLEILGT 772

Query: 774 -------------------------------LSDNQTFNRGLIIHKLLQVIFTLPEH--- 799
                                              +    G   H  L++     +    
Sbjct: 773 ELKSSVSRLEQFARCPFAHFARYVLRLQERHEFRVEAPEMGNFFHHALRLFAESLQAEGL 832

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA--------------MSCDS 845
                 T            +    L   I   L +  M                 ++  +
Sbjct: 833 DWAQLETEEAQARMNSIVEELIPRLQGEIL--LSSARMRYLAERLKETLAQAVAALTEHA 890

Query: 846 YSE----VSVSGKINCPKKDII----------ISGRIDQ--ISISQQNIF--IFEYKTHH 887
                  V+V       K              + G+ID+  ++ ++   +  + +YK+  
Sbjct: 891 RRSQFKTVAVEMSFGSGKTPAWQLRCGQTQLKLYGQIDRIDLAEAEGKAWLRVIDYKS-T 949

Query: 888 HVPQEIEHIPYTHIAQLSIYEKILKD 913
            +  ++  + +    QL  Y  ++K+
Sbjct: 950 PIELKLSDVWHGLSLQLLAYLAVVKE 975


>gi|110799377|ref|YP_696306.1| ATP-dependent DNA helicase UvrD [Clostridium perfringens ATCC
           13124]
 gi|110674024|gb|ABG83011.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens ATCC 13124]
          Length = 763

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 62/209 (29%), Gaps = 33/209 (15%)

Query: 134 NAHYEEAKKKNCV----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A Y      N +    +D +DL        +   +      K      HI+IDE QD S
Sbjct: 491 LAEYMRENLANNIDKKIIDSDDLAAMLYLKFRIEGIEESSLLK------HIVIDEAQDYS 544

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           ++Q  V+  +              ++L  VGD  Q IYSF G             ++   
Sbjct: 545 MLQLYVMSMMAS-----------GKSLTIVGDIGQGIYSFKG---------INDWKEAIK 584

Query: 250 -NAGQKFSIIELPLSFRSTADILTVVDKVF--SIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               +      L  S+RST +I+   +KV                   +           
Sbjct: 585 LVYDENAEYKHLSQSYRSTVEIINYANKVLVKQNTYEEPAKPVLRHGMVPEEIEFNNAKE 644

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +  + +V +   +            D 
Sbjct: 645 FCERLDNIVKKVKDEGKTSIAIVGKTLDE 673


>gi|294775535|ref|ZP_06741045.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294450585|gb|EFG19075.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 959

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/396 (14%), Positives = 112/396 (28%), Gaps = 68/396 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++M V   + L+   + L+                I  +L    G+     +      
Sbjct: 519 GMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHK------ 572

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I        +   + E   L+Y                NTS++  +       M+     
Sbjct: 573 IAVYAYYFYRLLQRAERITLMY----------------NTSSDGLNRGEWSRFMLQFLIE 616

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               + +  L    +          T       + R   ++ L D +  PK  FSP   +
Sbjct: 617 WPHPITRQFLEAGQSP---QGTSPITVEKTPDVMRR---MQSLFDVRANPKAKFSPSALN 670

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFIT 806
                 L        G +  + + ++  +   G I H   +     + T  +   K  + 
Sbjct: 671 YYLDCPLKFYYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALE 730

Query: 807 SYCTKNAKLWP--AKEYKNL--------------LLSITRLLENPMMTTAMSCDSY---- 846
           +      KL       +K L              +  I   +    +   +  D      
Sbjct: 731 TLLRNEVKLQDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDLRYAPF 790

Query: 847 ----SEVSVSGKINCPKKDIIIS----GRIDQISISQQNIFIFEYKT----HHHVPQE-- 892
               SE+ V   I+      +I     G ID++      + I +YKT          E  
Sbjct: 791 TFIASEMEVDEPIDIQTPKGVIKSRIGGIIDRMDSKDGTLRIVDYKTGGDADTPPHVESL 850

Query: 893 --IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
              +     ++ Q  +Y  I+    P   +   L+Y
Sbjct: 851 FIPDKKRSNYVFQTFLYAAIMCRKQPTMKIAPALLY 886


>gi|332169841|gb|AEE19096.1| hypothetical protein Krodi_1112 [Krokinobacter diaphorus 4H-3-7-5]
          Length = 898

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/566 (10%), Positives = 149/566 (26%), Gaps = 83/566 (14%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV----CMLKSPL-FNFSEDDIFKICT 458
           V       L+          L     +   +  +      +L++PL  +        +  
Sbjct: 321 VNITMGLPLSKTPTASFFDQLITLKKNPHKNGYYFKDVLNILRNPLSVSLLGSQTEYLEH 380

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI------AQFCSPHDFFTLILGAKK 512
           +      ++  + + A         V   + +  +              +    +     
Sbjct: 381 EIITNNLIFISVPRLAELSGDSANTVFNLLFKTWNENPKDAVINCIRIIEALRELFDTGN 440

Query: 513 GRQQFISRFGNEVIDV-LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN- 570
              Q    +G  V    L + ++      Q+    +   I    +   +       +   
Sbjct: 441 NTLQLEYIYGFYVAFNKLKQLMDA-----QDHIKDIPTFIHFYREILSSETIDLRGDPEQ 495

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            ++IM V  ++ L+   V +      +      +  +I   L         +P    ++ 
Sbjct: 496 GLQIMGVLESRVLDYKHVIITSVNEGILPSGKSQNSYIPYDLK----KLYNLPTYSEKDA 551

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           + +    H           LL+   T   D L     +   + +KS              
Sbjct: 552 VYAYHFYH-----------LLHRACT--VDLLYTTHSTGLGSSEKS---------RFIRQ 589

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
            +E        + +        E   H P++T +        +   + + KK  SP    
Sbjct: 590 IEEEGIHNIKKHVVTPSTIKIEERLPHIPKDTAI--------IDSLKNLFKKGISPSALT 641

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSY 808
                 +        G  +   +         G I+H  L+ +    + +      I   
Sbjct: 642 TYLRDPIVFYERYVLGINSSNEVEETVAANTMGTIVHNTLEELYKPHVEQQLTVTIIEEL 701

Query: 809 C------------TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
                                 +    ++ +I        +          ++ +   + 
Sbjct: 702 LTMIEVEVRNQFKLVYGLNHITEGKNKIVYAIVTRYVENYLKREKGLLKKGDIVIIKSVE 761

Query: 857 CPK------KDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----------HIPYTH 900
                    +DI + G++D +     N+ I +YKT     +++              +  
Sbjct: 762 DDLRNIQLTEDIFLRGKVDLVEQRNGNVNIVDYKTGKVAQKDLNLSAFNDLLLPEGKFEK 821

Query: 901 IAQLSIYEKILKDSYP-NKSLVCLLI 925
             Q+ +Y  +L    P +  +   +I
Sbjct: 822 AFQVLMYAYMLSKKKPLDFPVSVGII 847


>gi|239625644|ref|ZP_04668675.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519874|gb|EEQ59740.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1176

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 66/607 (10%), Positives = 160/607 (26%), Gaps = 104/607 (17%)

Query: 408  DRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY 467
            D       L    L    R +  +          + P     + ++ ++   R       
Sbjct: 425  DGSREHAGLMTDRLENYVRALGIRGWKRWESQ-WEKPCRGGEKLNLKELNAYRQWILKPL 483

Query: 468  EYIQKFANCGISKFQHVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
              +++      +    V   + E +          D+     G      + + R  ++V 
Sbjct: 484  RPLREAFKEEGATIGSVTAALREYLERMGLRGKLEDYSEFFRGRGNPGDENLVREYSQVY 543

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLES 585
            D + E             + ++     L+     IK        ++V +  +  ++  + 
Sbjct: 544  DRVLELFERLEGLLGAEKTDMKNYPQILDAGFGEIKVGVIPATIDQVMVGDITRSRLEDV 603

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDD-PGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
             V+F V         +      +            + +  +   +  +            
Sbjct: 604  KVLFFVGVNEGTVPQRKSGASLLTDRDRAVFKEFNMELAPTAREDGCIQKFY-------- 655

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN----DERVKKIKL 700
                  LY+ M + S +L++     +S  K     +    V   F      DE      +
Sbjct: 656  ------LYLMMAKPSRRLVLTYAGMSSEGKSQRPSSLIGEVEKLFPGIAVQDEESVDWPV 709

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                +  E +         E      +    +  +E    +       +D +   +    
Sbjct: 710  RTVRDGREMLIDGLRKLREEKEGEHAKAPEGRDAEENAFMELYRYFYCSDEHREKVRQLV 769

Query: 761  TIDTKGKTNLESLLSDNQTF----NRGLII-----------HKL---LQVIFTLPEH--- 799
                          +  +       +G +            H L   L+++         
Sbjct: 770  DAAFYSYEERGIGRAAARALYGQSLQGSVTRLEQFASCAYAHFLKYGLELMERQEYELEA 829

Query: 800  -KRKNFITSYCTK----------NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS- 847
                N       +          + +    +  K L+      +      T M+  + + 
Sbjct: 830  VDMGNLFHQSIDRCFAVMKERGQDWRGLTEEGRKQLVKECVARVTEEYGNTIMASSARNA 889

Query: 848  -------------------------------EVSVSGKINC--------PKKDIIISGRI 868
                                           EVS S   N           +++ + GRI
Sbjct: 890  YLAGRVERITDRTIWALAEQVKKGDFEPTGFEVSFSAIDNLKAMRISLSEDEELQLRGRI 949

Query: 869  DQ--ISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSL 920
            D+  +   +Q+++  I +YK+      ++  + Y    QL +Y        + ++P+K +
Sbjct: 950  DRLDLCEDEQHVYVKIIDYKSGTTSF-DLAALYYGLQLQLVVYMDAAVEMEERNHPDKEV 1008

Query: 921  V-CLLIY 926
            V   + Y
Sbjct: 1009 VPAGIFY 1015


>gi|89067400|ref|ZP_01154913.1| putative Helicase/Exonuclease [Oceanicola granulosus HTCC2516]
 gi|89046969|gb|EAR53023.1| putative Helicase/Exonuclease [Oceanicola granulosus HTCC2516]
          Length = 977

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/362 (10%), Positives = 91/362 (25%), Gaps = 34/362 (9%)

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
             R  +A H  V+I     ++   + +V L       +         +  ++    G+ +
Sbjct: 549 EVRNPTAGHPLVQIRGTLESRVQGADIVILGGLNEGTWPEVPAPDPWLNRTMRHRVGLLL 608

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
              +     +     I   +            V +TRA            S+E  +    
Sbjct: 609 PERRIGLSAHDYQQAIAGPE------------VWLTRARR----------SDEAGTVPSR 646

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
           W + + +           +   ++          +                         
Sbjct: 647 WLNRLTNLLEGLTTTHGPEALAAMRARGAAVVAQAAAIVRAPDRIEPAPRPSPAPPVAAR 706

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
            +  S  +         +           L+ L+       RG I+H  L+         
Sbjct: 707 PRQLSVTQIQRLIRNPFHIYARKVLRLQALDPLVPGPDALMRGNILHAALEAFVEADVDP 766

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--------SCDSYSEVSVS 852
              +         +   A                  +                 + + VS
Sbjct: 767 SLPWARRTLLAKTEEALADACPWPAHRRLWFARMERVADWFLETEAERRRRGRPAHLEVS 826

Query: 853 GKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           G+I     ++ + G+ D+I ++ +    +++YKT     Q  +        QL +   ++
Sbjct: 827 GEITLHDLELTLRGKADRIDLTPEGRAILYDYKTGTPPSQPQQEKFDK---QLLLEAAMI 883

Query: 912 KD 913
             
Sbjct: 884 AR 885


>gi|168209311|ref|ZP_02634936.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712511|gb|EDT24693.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 763

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 33/209 (15%)

Query: 134 NAHYEEAKKKNCV----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A Y      N +    +D +DL        +   +      K      HI+IDE QD S
Sbjct: 491 LAEYMRENLANNIDKKIIDSDDLAAMLYLKFRIEGIEESSLLK------HIVIDEAQDYS 544

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           ++Q  V+  +              ++L  VGD  Q IYSF G             ++   
Sbjct: 545 MLQLYVMSMMAS-----------GKSLTIVGDIGQGIYSFKG---------INDWKEAIK 584

Query: 250 -NAGQKFSIIELPLSFRSTADILTVVDKVF--SIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               +      L  S+RST +I+   +KV                   +           
Sbjct: 585 LVYDENAEYKHLSQSYRSTVEIINYANKVLVKQNTYEEPAKPVLRHGMVPEEIEFNNAKE 644

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +  +++V +   +            D 
Sbjct: 645 FCERLDRIVKKVKDEGKTSIAIVCKTLDE 673


>gi|313801278|gb|EFS42529.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2]
 gi|313829492|gb|EFS67206.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2]
 gi|314919388|gb|EFS83219.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1]
 gi|314920704|gb|EFS84535.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3]
 gi|314930583|gb|EFS94414.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1]
 gi|314954461|gb|EFS98867.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1]
 gi|314957548|gb|EFT01651.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1]
 gi|314963758|gb|EFT07858.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1]
 gi|315079606|gb|EFT51599.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2]
 gi|315099125|gb|EFT71101.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2]
 gi|315100392|gb|EFT72368.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1]
 gi|315109104|gb|EFT81080.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2]
 gi|327452086|gb|EGE98740.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1]
 gi|327454876|gb|EGF01531.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3]
 gi|327457840|gb|EGF04495.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2]
 gi|328758227|gb|EGF71843.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2]
          Length = 751

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 111/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 663

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +V+   R      + +  F  +   I +   D     D 
Sbjct: 664 APVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|163800600|ref|ZP_02194501.1| putative ATP-dependent DNA helicase [Vibrio sp. AND4]
 gi|159176043|gb|EDP60837.1| putative ATP-dependent DNA helicase [Vibrio sp. AND4]
          Length = 637

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 71/560 (12%), Positives = 155/560 (27%), Gaps = 81/560 (14%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y   K  N ++  +++++    + +K +    I   +  +  +I +DE QDT+    
Sbjct: 137 YKEY--VKIVNGIISHDEVVVLATKMFEKYERLCSI---VKDKYPYIFVDEYQDTNP--- 188

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
                + +         + P  +   GD  QSIY   G+     +  K           +
Sbjct: 189 ----MVVKVLLEYMERSNKPNVVGFFGDAMQSIYD--GSVGNLDIYTKSEPPTVYEVIKK 242

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                    + R+   ++ + + +    E  Q  S+D +             G V     
Sbjct: 243 --------QNRRNPLQVINLAN-LIRTDELVQEPSDDQSAPNM------DNNGKV----- 282

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
                      + +   S  D+L             + T+  +     +  N        
Sbjct: 283 --------KQGEIKFLYSTSDNLKTVRQHLGWDFNCSTTVKEL----NLTHNLIAVQANF 330

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
            +++ +  K K    I    R    + +       +           L  +   + +   
Sbjct: 331 PELMRIYDKDKILEYIRDKVRKPLAENEPEYDSTGKT----------LAQVLEHVGNPNP 380

Query: 434 DLSFVCMLKSPL------FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
             +    + +         +   D + K+   + +   + +  + +         +    
Sbjct: 381 TPAQNTYIDNHYECFELAKSLPFDQLSKLYVNKDQ---LLDDKKNYVGDDSKPNSNRDDL 437

Query: 488 IHELIHIAQFCSPHD--FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
           I+ L  I      ++       + A        S         L + +     +E  S  
Sbjct: 438 INHLFKIENCIRLYESKNHNRFIKATDY-----SILSVNDKVNLHKAIQAFQIDEGISIG 492

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF--LVDTGSQVFSHKHI 603
            + +L  EL       K    A         V   K  E   VF  L         HK  
Sbjct: 493 KVIDLAHELGLVVKDDKVEKFAADRYYVYKQVCDIKYQEFRNVFNYLEGFLPFSTQHKTK 552

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
                   +  D G            +  +D ++   +        + YV  TRA ++L 
Sbjct: 553 GSEFPNVLILLDNGKWNQYNFKYLFEHDGTDSVRQRTEK-------IFYVCCTRAKEKLA 605

Query: 664 ICKHSNTSNEKKSNQRTWYD 683
           +   + T    K+    + +
Sbjct: 606 VFFPNPTQKTVKTALEWFGE 625


>gi|150005967|ref|YP_001300711.1| hypothetical protein BVU_3465 [Bacteroides vulgatus ATCC 8482]
 gi|149934391|gb|ABR41089.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 959

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 113/850 (13%), Positives = 232/850 (27%), Gaps = 139/850 (16%)

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D          K  V     +   Q++ +I+ D+       Q E IR   ++F + +
Sbjct: 105 DFDD--------ADKNKVDTDKLFSNLQDLRNIM-DDYTFIDDEQEEAIRQFFQNFSIER 155

Query: 208 NTHSSPRTLF---AVGDEKQSIY-SFHGA----EPKRVLREKRINQKRATNAGQKFSIIE 259
            T    R +     +G+    IY  F  +             R   +        +    
Sbjct: 156 RTALKERFISLWDVLGN----IYKGFRESLASQNIAYEGMMYRHVIEHLDVDKLPYEKYV 211

Query: 260 LPLSFRSTADILTVVDK-VFSIPENAQGL----SEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                    ++L  V+  +F+  ++A         D      +R +   + G        
Sbjct: 212 FV-----GFNVLNKVEHTLFTQLKDAGKAVFYWDYDEFYMKENRQAVTHEAGEFIRRNLR 266

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                      +             S+ +  AR +   I N + T              K
Sbjct: 267 DFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLPQWIRNNLTT------------PEK 314

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
           +  V++        +            I       F L+       L+AL        + 
Sbjct: 315 ETAVVLCNEALLQPVLHSLPAEVKHVNI----TMGFPLSQTPVYSFLIALLELHTHGFNF 370

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ-HVIKYIHELIH 493
            S     +S +         ++  Q    E       +F        +   +  +     
Sbjct: 371 KSGRYTFQSVVTLLKHPYTRQLTGQAELLEKELTRNNRFYPLPGELGKDEFLTRL--FTP 428

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
           ++   +     +  L    G  Q  +  G E  D  ++       +   +Y+++    + 
Sbjct: 429 LSGNLNLCIRLSETLQQVAGIYQ-ANTSGTEDTDAFNQLY---RESLFKAYTTINRFRTL 484

Query: 554 LEQYPPTIKRA-----------------HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           +E+   T++                   H      +++M V   + L+   + L+     
Sbjct: 485 IEEDELTVQSETFRRLLVKVLSATNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEG 544

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                      I  +L    G+     +      I        +   + E   L+Y    
Sbjct: 545 QLPKSGGDSSFIPYNLRKAFGMTTIEHK------IAVYAYYFYRLLQRAERITLMY---- 594

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
                       NTS++  +       M+         + +  L    +          T
Sbjct: 595 ------------NTSSDGLNRGEWSRFMLQFLIEWPHPITRQFLEAGQSP---QGTSPIT 639

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                  + R   ++ L D +  PK  FSP   +      L        G +  + + ++
Sbjct: 640 VEKTPDVMRR---MQSLFDVRANPKAKFSPSALNYYLDCPLKFYYRYVAGLSAPDEVSAE 696

Query: 777 NQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNL------ 824
             +   G I H   +     + T  +   K  + +      KL       +K L      
Sbjct: 697 IDSATFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKLQDYVDTAFKKLFFNVPQ 756

Query: 825 --------LLSITRLLENPMMTTAMSCDSY--------SEVSVSGKINCPKKDIIIS--- 865
                   +  I   +    +   +  D          SE+ V   I+      +I    
Sbjct: 757 NEKPEYNGVQLINSAVIARYLKQLLQNDLRYAPFTFIASEMEVDEPIDIQTPKGVIKSRI 816

Query: 866 -GRIDQISISQQNIFIFEYKT----HHHVPQE----IEHIPYTHIAQLSIYEKILKDSYP 916
            G ID++      + I +YKT          E     +     ++ Q  +Y  I+    P
Sbjct: 817 GGIIDRMDSKDGTLRIVDYKTGGDADTPPHVESLFIPDKKRSNYVFQTFLYAAIMCRKQP 876

Query: 917 NKSLVCLLIY 926
              +   L+Y
Sbjct: 877 TMKIAPALLY 886


>gi|86747754|ref|YP_484250.1| hypothetical protein RPB_0628 [Rhodopseudomonas palustris HaA2]
 gi|86570782|gb|ABD05339.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas
           palustris HaA2]
          Length = 1048

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/467 (11%), Positives = 118/467 (25%), Gaps = 51/467 (10%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL---ILGAKKGR 514
            +      + +     A+  I   +  +  +  +                  I  +    
Sbjct: 504 HRAEPRARLGDEALDEAHALIVALRAALAPLESVGVEPIDLCAFGQRHRAVLIALSIDHD 563

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEV 572
              ++  G +   +L  F +       +          EL    +   I R        +
Sbjct: 564 DNAVAFEGPQGSALLKAFDDLAEVEPLSGVMVPPHDYPELFETAFSDRIVRRPELAGAAL 623

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           RI     A+  +   V L      V+         +   +  + G+ +   +     +  
Sbjct: 624 RIYGPLEARLTQHDRVVLGGLVEGVWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDF 683

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           + L+   +                     +I+   +          R  + +   +    
Sbjct: 684 AQLLGANE---------------------VILSHAAKVGGAPAVASRFLHRLEAVAGKAR 722

Query: 693 ERVKKIKLTNSINKDEWI-AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
               K +    ++    +   +  T   +  P    E     +    I   L  P     
Sbjct: 723 WSDIKARGATYLDYALALDRPDQVTPIAQPAPKPPREARPLKLSVTAIEDWLRDPYTIYA 782

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHKRKNFITS 807
                L+           L+ +       NRG  IH+ L    +             +  
Sbjct: 783 KFILGLSA----------LDPVDMPLSAANRGSAIHEALGDFTERFPDALPDDPAGLLRE 832

Query: 808 YCTKN-AKLWPAKEYKNLL----LSITRLL-ENPMMTTAMSCDSYSEVSVSGKINCPKK- 860
              K+ A L    E + L       I            A     ++E   S  I      
Sbjct: 833 IGEKHFAPLMDHPEARALWWPRFARIAAWFGNWEQGRRADGRRVFAERDGSLSIPLDGGR 892

Query: 861 DIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           + +++ R D+I         I +YKT +      + +      QL++
Sbjct: 893 NFVLTARADRIEHRPDGSYAILDYKTGNPPSS--KQVRLGLSPQLTL 937


>gi|319947957|ref|ZP_08022137.1| ATP-dependent nuclease subunit B-like protein [Dietzia cinnamea P4]
 gi|319438385|gb|EFV93325.1| ATP-dependent nuclease subunit B-like protein [Dietzia cinnamea P4]
          Length = 1005

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 71/654 (10%), Positives = 158/654 (24%), Gaps = 100/654 (15%)

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM-LKSPLFNFSE 450
           L      +  I+V G     L    A + L+ L R      D        L S +   S 
Sbjct: 289 LLHRAFAEAGIAVYGPSDSTLGRSPAGRSLVRLLRL-----DTSMMPRAELLSIIAEGSV 343

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH---------ELIHIAQFCSPH 501
             +                  +F   G   +  + +++          E++  +   +  
Sbjct: 344 TPLDDSGAAVSSRRVESLTRTRFPVIGGGDWDRLDEHLRTEPEASGESEVLGESDRAAAS 403

Query: 502 DFFTLI-LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ--ELISELEQYP 558
               LI L          +R   E  D +   +    R   +  + L     +++L+   
Sbjct: 404 ALLRLIRLIRSGLAAVDAARTWTEAADAVRGLVTAAFRQGPDRAAVLAVVGALADLDAIA 463

Query: 559 PTIKRA----------------HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           P I R                        V +  +  A G +   V +V     +    H
Sbjct: 464 PAITRDRVAGAVTARLDPVGDRVGEEGAGVALGPIDDAVGRDLDTVCVVGMAEGLLPVLH 523

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL------------ 650
                +     + P   +   + +     ++   +    S      R             
Sbjct: 524 APDPLLPEGSVEPPSAEVLDERYRVLQLALAAGSERRLCSFPRGSMRGGGDRIPSRWLLP 583

Query: 651 -------LYVGMTRASDQLI-------ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                    V  TR  + +        +    +          T      +    +    
Sbjct: 584 TLSRLVGSPVHATRWQEDVAGCAAVIGVSSFVDGVLAPPVALGTDPATRTELRLRNLAAG 643

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND--INEP 754
             +           A+E      +         +    D   + ++  SP + +     P
Sbjct: 644 GWRTRPDAPALLVAAHEMRRDRRQGRFTRFTGDVSSAADLLTVLEQPLSPTRLEDWAQSP 703

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL-------PEHKRKNFITS 807
           Y+   ST+      +  +   +    + G ++H +LQ   +        P+         
Sbjct: 704 YLFFLSTVLRVRTLDDPAADIEMDLRDYGDLVHAILQRYVSARIESGSGPDRDLLMAALR 763

Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA------MSCDSYS-------------- 847
           +  + A         +L      +L   +                               
Sbjct: 764 HECEAAIAASPGLVASLWRRREMMLAAELDRWFAEDSADFDAGWRPAATELGFGRSDGDG 823

Query: 848 ---EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY-----T 899
              E+      +     ++++G ID++ +      + +YKT      E            
Sbjct: 824 AVVEIPFEVSTSTGTATVLLAGSIDRLDVRAGTQRVTDYKTGKPPEAEARPTADDPTLRG 883

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIY--VSEPKVFIIPQNKLNKAFAEISTKI 951
              QL +Y      S     +     +      +   I  +        +   +
Sbjct: 884 TRFQLPLYAAA-AQSAGRAPVSGARYWYCTERGEFEQISLDITEDVMDRVREDV 936


>gi|302874540|ref|YP_003843173.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|307690849|ref|ZP_07633295.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|302577397|gb|ADL51409.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
          Length = 763

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 29/215 (13%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS-QDEFIKIRDRFNTYKMFKSTLASLT 128
               LT  +  + +   + I   +  L E       D+  K+       +     +A  +
Sbjct: 426 RRAELTSLYDERDSKRDRLIKGYNKTLDEYFNSWKHDDIKKLYRELLFDEEIFKEVAEDS 485

Query: 129 LAKYLNAHY-EEAKK--KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
           + + L  H  E+  K  +  ++D +DLI      LK   +   + +K      H++IDE 
Sbjct: 486 IPQELYNHIKEDTLKSSEKDLVDADDLIAMAYLKLKIYGIDKKLIHK------HVVIDEA 539

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD S   +EVI+    +F  G        +   VGD  Q IY + G     +   + +  
Sbjct: 540 QDYSYFAYEVIK----EFSSG-------NSYTIVGDLGQGIYYYKG-----IEDWQDLIS 583

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           K  +        I L  S+RST +I+   ++V   
Sbjct: 584 KVFSYNSS---YISLKQSYRSTVEIIDFANRVLKK 615


>gi|291483546|dbj|BAI84621.1| ATP-dependent deoxyribonuclease subunit B [Bacillus subtilis subsp.
           natto BEST195]
          Length = 1166

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/726 (8%), Positives = 186/726 (25%), Gaps = 158/726 (21%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR--IAYTISNMIGTDTIFSNGKKR 369
            ++              +    ++L    +A+  A    IA  I  ++           +
Sbjct: 288 PELAHLEAQYEARPAVPYAEKQEALTVMQAANRRAELEGIAREIHALVRE---------K 338

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + KD+ +L R          + + +  DY+I    + +  + +H  I+ + +    + 
Sbjct: 339 GYRYKDVAILAR---QPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSLDVLK 395

Query: 430 SQEDDLSFVCMLKSPLF---------------------------NFSEDDIFKICTQRHE 462
                 +    +K+ L                                    +   +R  
Sbjct: 396 GNWRYEAVFRCVKTELLFPLNEPKAKVREQVDQLENYCIAYGIKGDRWTKGDRFQYRRFV 455

Query: 463 TETVYEYIQKFANCGISKFQHVIKYI--------HELIHIAQFCSPHDFFTLILGAKKGR 514
           +               +       +I          +          +     L      
Sbjct: 456 SLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQLQKRMKKAKTVQEKAEALYRYLEETDVP 515

Query: 515 QQF--------------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            +                ++   +  D + + L   +    +   SL      +E    +
Sbjct: 516 LKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEISLDLFQQMIEAGAES 575

Query: 561 IKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
           +  +      ++V +  +  ++   +   F++     V   +  +   +     +     
Sbjct: 576 LTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTI 635

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                S               +    + + L+Y+  +  SD+L +      +  K     
Sbjct: 636 GVELSSGG-------------RERLLDEHFLIYMAFSSPSDRLYVSYPIADAEGKTLLPS 682

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                + + F + +          ++ +E + Y  +    ++    +     +  D   +
Sbjct: 683 MIVKRLGELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQSFTASQLRLWTREYDISDV 742

Query: 740 PKKLFSPIKNDINEPYI------------------------------LNPSTIDTKGKTN 769
               ++ + +  +                                   + S ++T     
Sbjct: 743 WWSTYNVLMSAPDRLQSKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETFNACP 802

Query: 770 L-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKL 815
                       E      +  + G + H  L++I           ++     C   +  
Sbjct: 803 FSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLREQKLDWRDLTKEQCELFSYD 862

Query: 816 WPAKEYKNLLLSITRLLEN--------------PMMTTAMSCDSYSE--VSVSGKINCPK 859
              +    L   I   L +                ++  +S  + +   V +  ++    
Sbjct: 863 AVERLAPKLQKEIL--LSSNRHYYVKEKLQKIVTRVSGILSEHAKASGFVPIGLELGFGG 920

Query: 860 KDII--------------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHI 901
           K  +              + GRID++  ++ +    + I +YK+      ++  + Y   
Sbjct: 921 KGPLPPLTFQLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS-DKGLDLAEVYYGLA 979

Query: 902 AQLSIY 907
            Q+  Y
Sbjct: 980 LQMLTY 985


>gi|228984227|ref|ZP_04144409.1| UvrD/REP helicase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228775514|gb|EEM23898.1| UvrD/REP helicase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 777

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 95/270 (35%), Gaps = 52/270 (19%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKEAKVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKST---LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +   + +   +R    T +    T       T A ++        K       +D+   T
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTDASWVTGE-----KPKNW---DDICSLT 506

Query: 157 NDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L     
Sbjct: 507 VNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF---- 562

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +  +GD  Q+I++ H +E         +     TN       I L  S+
Sbjct: 563 -------PAARMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------INLTRSY 608

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           RST  I+     +    +N      D    
Sbjct: 609 RSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|89893428|ref|YP_516915.1| hypothetical protein DSY0682 [Desulfitobacterium hafniense Y51]
 gi|89332876|dbj|BAE82471.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1600

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 150  EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
            +++I  T   +K  DV      K       ++IDE QD    ++ +I +L +        
Sbjct: 1146 DEIIQETIKRIKNGDVEPGRITK-----TVLVIDEAQDMDAHEFALINALMD-------- 1192

Query: 210  HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +    + AVGD+ Q+IY F GA  + ++              ++  + EL  ++RS ++
Sbjct: 1193 RNEEMRVIAVGDDDQNIYEFRGASSEYMVNLI---------LEKRAKLYELVENYRSKSN 1243

Query: 270  ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            ++   ++           +          + +
Sbjct: 1244 LVDFSNQFAERIPLRLKDTPIIAHQSDLGTIK 1275


>gi|254826844|ref|ZP_05231531.1| addB [Listeria monocytogenes FSL N3-165]
 gi|258599222|gb|EEW12547.1| addB [Listeria monocytogenes FSL N3-165]
          Length = 1157

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 89/701 (12%), Positives = 184/701 (26%), Gaps = 160/701 (22%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           Q ++       IA  I  +               + +DI +L R   D  ++        
Sbjct: 307 QANNRRAEIEGIAREIRQLALNG----------YRYRDIAILTRNLGDYDVLCETVMEA- 355

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
             Y I    + +  +  H  I+ + +    IL + + +  F  +     F+ +E      
Sbjct: 356 --YNIPTFIDKKRAMAKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNR 413

Query: 453 --------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIKY---IHELIHIA 495
                         I        E + +Y  I+  +   + +    I     I+E+ ++ 
Sbjct: 414 RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLI 473

Query: 496 QF-CSPHDF--------FTLILGAKKGRQQF--------------------ISRFGNEVI 526
               S  +             L      +Q                     ++R   +  
Sbjct: 474 VNPLSTLELNLRKAKTGMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAW 533

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
             +   L+  +         L      +              + ++V +  +  AK L+ 
Sbjct: 534 SSISALLDEFVEVLGEETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDM 593

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
            V+F +     V   +   K        D         +  ++NNI              
Sbjct: 594 KVIFAIGMNDGVMPLRQKDKGIFSDQDRDALRAEDSKLKPSAKNNIG------------- 640

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
           E + L Y  ++  SD+L +   +     K  ++  +   +   F+       +   + ++
Sbjct: 641 EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFNELNESVYLTDPSLLS 700

Query: 706 KDE-------------------------------WIAYEWSTHHPENTPLEREETIKQLM 734
             E                               W     S    E      ++ +  L 
Sbjct: 701 DAEQSSYIRSKQATLGLLTSQLQMYKRGYTLSSVWWDAYNSYFENEKESTMAKQVLSSLY 760

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
            E K      +  KN   E    + S ++                  E      Q  + G
Sbjct: 761 YENKTKPLQETTAKNLFGETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQLQAVDMG 820

Query: 784 LIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
            I H  ++ I    +       N     C + AKL        +   I   L +  M   
Sbjct: 821 EIFHGAMEWISAELKRNNLDWGNLKEEECKQMAKLAMTFLAPKIQHEIL--LSSKRMEYI 878

Query: 841 M------------------SCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
                                 ++  V +                     ++++ GRID+
Sbjct: 879 QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDR 938

Query: 871 I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           I  +       + I +YK+  H    +  + Y    Q+  Y
Sbjct: 939 IDMAEQDDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTY 978


>gi|307721873|ref|YP_003893013.1| hypothetical protein Saut_1958 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979966|gb|ADN10001.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 782

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 110/393 (27%), Gaps = 53/393 (13%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 +V +M V   + +    V ++D   +    +  K M +   +     +P    +
Sbjct: 404 DDVRGGKVTVMGVLETRSVHFDAVIIIDFDDKNVPKRSDKDMFLNTQIRKVASLPTMSDR 463

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
              + +    L+   ++           V ++       +    ++ +          + 
Sbjct: 464 ENLQKHYYEMLMARSQE-----------VAIS------YVSSEQSSGSRFLKQLGIQENN 506

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
           ++      E +                             +  +   +++ E        
Sbjct: 507 LHSELDYAEILF------------------------ARVKQEPKQESEIVQEYSFKNIEL 542

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL------QVIFTLPE 798
           S  +                K   N E      Q +  G ++H+ L      Q  +T  +
Sbjct: 543 SATRLKTFLTCKRKYYYKYIKYIKNHEIPKDMPQEYEIGNVVHRALKEVYEKQNYYTDTQ 602

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
             +++   +      +    K   ++         +  +        +   S       P
Sbjct: 603 KLKRDIDKALDEFCGESELDKYLVSMQKKRLEAFVDVEIQRF--EQGWHVASTEEYFKAP 660

Query: 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
              I I+G+ID+I   +  I + +YKT  +      +       QL  Y  +        
Sbjct: 661 YAGITIAGQIDRIDKKENLIEVLDYKTGSYTLNTKNNFTDATDFQLEFYYLLAGGL--GN 718

Query: 919 SLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
              C    + E ++   P++ L++    + + I
Sbjct: 719 VQSCGFYDLKESRIV--PESFLDEKLEILKSHI 749


>gi|327192795|gb|EGE59723.1| hypothetical protein RHECNPAF_192003 [Rhizobium etli CNPAF512]
          Length = 1064

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/400 (11%), Positives = 91/400 (22%), Gaps = 48/400 (12%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               + NE  D L   L   +  + Q      Q +            +  + +H  + I 
Sbjct: 584 LADLWSNEAGDALASLLGEVIDTDGQMEADGPQWIDITAALAAGHAVKPRALSHPRLFIF 643

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+      + L       +  +      I   +  + G+     +     +     
Sbjct: 644 GTLEARLQSVDTLILGGLNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFE-- 701

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                              M   +  LI  +     +      R    ++       E  
Sbjct: 702 -------------------MANGTRHLIYSRALRQGSTPTVASRWLQRLLALGGEAFEAE 742

Query: 696 KKIKLTNSIN-KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            K +    +         E        +P        Q     ++ +    P        
Sbjct: 743 LKGRGARFLQWAGLVDRGETQAPAQRPSPKPPLALQPQSYSFSEVGRLRRDPYTIYARRI 802

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP----EHKRKNFITSYC- 809
             L+P                D     RG + HK++             +    +     
Sbjct: 803 LRLDPVDA----------FNRDPGAAERGTLYHKIIDRFIRAAHVAGTPEAAAAMELILT 852

Query: 810 -----TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                 K      A             LE           + +EV   G +     +I +
Sbjct: 853 ELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVR--GGVELEAINIRL 910

Query: 865 SGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
           +G  D+I  I      I +YKT ++              Q
Sbjct: 911 NGVADRIDMIGPNAADIIDYKTGYNP--SPAQARALLDPQ 948


>gi|149182416|ref|ZP_01860892.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. SG-1]
 gi|148849879|gb|EDL64053.1| ATP-dependent deoxyribonuclease subunit B [Bacillus sp. SG-1]
          Length = 1163

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 66/698 (9%), Positives = 197/698 (28%), Gaps = 154/698 (22%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           + S+       +A  I  +  T+           + KD+ VLVR  ++      +   + 
Sbjct: 312 EASNRRAEIEGVAREIRRLARTE---------SYRYKDMAVLVRNGQE---YQDIIETVF 359

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
            DY+I    + +  + +H  I+ + +    + S          +K+ L    + +  ++ 
Sbjct: 360 YDYEIPYFIDQKRKMLNHPLIELIRSTLEIMNSNWRYEPVFRAVKTDLLFPYDRNPQQLR 419

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHEL-------------------------- 491
            +  + E          +    K + + +    L                          
Sbjct: 420 EKMDKLENYVLAYGIQGDKWTKKDRWIYRRFRGLEQADMPQTDKEREMEREINELRLFIS 479

Query: 492 -------IHIAQFCSPHDFFTLI---LGAKKGRQQFI--------------SRFGNEVID 527
                    + +  +  D   ++   L       +                +R  ++  +
Sbjct: 480 APILRFGRRLKKGKTGQDLCEILYLYLEELDIPAKLERLRLEAESRGDIISAREHDQAWN 539

Query: 528 VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESP 586
            + + L+  +    +   ++++  S ++    +++ +      ++V I  +  ++  +  
Sbjct: 540 AVMDLLDQFVEILGDEEVTVKKFASIIDAGIESMRFSLVPPAVDQVMIANLEQSRLSDLR 599

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
             F++     V   K  +         +                +    I    K+   +
Sbjct: 600 AAFVIGVNDGVLPAKITEDGIFSDEDREKL-------------AVSGLAIAPGSKTRLLD 646

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              + Y   T  S++L +         K      +   + +     E    +   + + K
Sbjct: 647 EEFIAYKAFTTPSERLYVSYPIANEEGKALLPSPYIKRLSELCPQSEISLLVNDPSELPK 706

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI--------------- 751
           DE ++Y    +   +      +  K+    +      ++   +D                
Sbjct: 707 DEQLSYVCHPNVTISYLTSGLQAKKRGYHIEDFWWDAYNYYVSDSVWKGRARHILSSLFY 766

Query: 752 ----------------NEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGL 784
                            E  + + S ++                  E  +   +  + G 
Sbjct: 767 QNKGKKLTEETSQELYGEEILASVSRMEMFHGCPFSHFANHGLKLRERDIYRLEAPDIGD 826

Query: 785 IIHKLLQVIFTLPE---------------HKRKNFITSYC--TKNAKLWPAKEYKNLLLS 827
           + H  L+ I    +                  +  + S     ++  L  +  +  +   
Sbjct: 827 MFHAALKWISEEIDRNGFSWKQLTKTQCLELAREAVLSLAPKLQHQILLSSNRHHYIKKK 886

Query: 828 ITRLL--ENPMMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQI-- 871
           +  ++   + +++       ++ V +        +             + + GRID++  
Sbjct: 887 LQDVIGRASLILSEHAKASGFAPVGLELGFGPKAELPPFAFTLKNGTKMALQGRIDRVDK 946

Query: 872 SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           + S + ++  I +YK+       +  + Y    Q+  Y
Sbjct: 947 AESDEGVYLRIIDYKSSAR-DLNLTEVYYGLSLQMLTY 983


>gi|228901353|ref|ZP_04065545.1| UvrD/Rep helicase [Bacillus thuringiensis IBL 4222]
 gi|228858277|gb|EEN02745.1| UvrD/Rep helicase [Bacillus thuringiensis IBL 4222]
          Length = 691

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD    Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFPPFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|296122608|ref|YP_003630386.1| ATP-dependent nuclease subunit B-like protein [Planctomyces
           limnophilus DSM 3776]
 gi|296014948|gb|ADG68187.1| ATP-dependent nuclease subunit B-like protein [Planctomyces
           limnophilus DSM 3776]
          Length = 1113

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 93/944 (9%), Positives = 229/944 (24%), Gaps = 181/944 (19%)

Query: 84  IITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK 143
           I T+ + K   D   +LK+ +    +        K   +          +   Y+     
Sbjct: 116 IETRGLTKIVSDWIAELKRDETWPEEFLKSCQQQKGGATGKDL--ALAAIYHEYQALLNA 173

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
               D E         + +   + +       ++  ++ D   D + IQ+E++       
Sbjct: 174 RGWYDQEGRSWLARAAVSQGARAPF------DQVRLVVCDGFVDFTWIQYELLEQFARW- 226

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                                            V+        +   +  +  +  +P  
Sbjct: 227 -----------------------------NADIVITLPDEFASQRNTSFDRSELFAIP-- 255

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            R T +IL             + L E    +I            ++  +   +   +   
Sbjct: 256 -RRTLEILK---------SRIKPLQEIRVHSISTNPDHGAVPTGIE--QLARNLFGNPRI 303

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
             + S  + FD++        L   +++ I     +  +            +I+V+VR  
Sbjct: 304 VSRCSTAAGFDAIAAGGPHREL-EAVSHQIKKWRSSGFLAE----------EIVVVVR-- 350

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                             I         L     ++ +  L +  L+         ++ S
Sbjct: 351 -GLASEASRWLDHFELAGIPAYAPQASSLESCPVVRWMAQLVKLELNDWTSHDLRLVVSS 409

Query: 444 PLFNFSE----------DDIFKICTQRHETETVYEYIQKFANC------------GISKF 481
             F  ++            + K      +  ++    +                      
Sbjct: 410 TFFRPAQFPSKAKRALLAWLAKSPASSRKILSLKARERAADPSALTTEKEINHTLVSQGL 469

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR--- 538
           + +++   +L     F    D +  I+              +       E L   LR   
Sbjct: 470 ETLLRVTEKLSTSHSFEGWIDLWAAIISQWTPF--LPDSSNDRADRADWELLQRILRRVS 527

Query: 539 ------NEQNSYSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGL-ESPVVFL 590
                  E +   SLQ   SE+E           + +   + ++    A+ L  +  V +
Sbjct: 528 RCRGTWQEPSERLSLQAWWSEVEACLSVERSLPPAPSPGMISLIDPAQARFLDSARCVVI 587

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V    Q +            +              +  ++    L+     S   E   +
Sbjct: 588 VGATEQAYPAADHTNCLYSHAERQSLIAAGLRLVREEDHSSEETLLFWQLVSMATENLLI 647

Query: 651 LYVGMTRASDQLI-----ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            Y  +     +L      +      + + +  +      V          + +++     
Sbjct: 648 TYPAINAKGQELFPSPFVLAACDLFTKDVQLPRHVGSIHVMPEREEIHTRRDLRIVAFEQ 707

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP---------------KKLFSPIKND 750
                A  W T   + T  +    + + +   +                   L       
Sbjct: 708 AMTGHAGWWKTGLLDTTEGQAYRNMARGLPMLQARYRTEGFTEYEGMLNEPALREEFARQ 767

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFN-------------RGLIIHKLLQVI---F 794
               +  + + ++          + +                  RG  +H  L  +    
Sbjct: 768 YGPEHQFSVTRLELYANCPFRFWIEEVLGLAPRETKQLSTNYLMRGTALHSALASLLGSG 827

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA---MSCDSY----- 846
            L           +    A     +   + L      L++ +++      +         
Sbjct: 828 RLALADEAELSRIFAEHVAVEMQRRAKGSPLAEAMARLDSQIVSAWSEQFAASQREYLET 887

Query: 847 -------------SEVSV--------------SGKINCPKKDIIIS--GRIDQISI---- 873
                         EV+                  +   +   ++   G+ID+I      
Sbjct: 888 MVSAWGGMPETTLPEVAFGQVYDDHGELIHGPYPALEISRGGHLVRLGGKIDRIDAHKLP 947

Query: 874 SQQNIF-IFEYKTHHHVPQEIEH--IPYTHIAQLSIYEKILKDS 914
           + +  F I +YK+        +   +      QL +Y   +K  
Sbjct: 948 TGEQFFSIIDYKSGGASQYRFDEKAVQQGLSLQLVVYLLAVKRL 991


>gi|229189237|ref|ZP_04316261.1| UvrD/REP helicase [Bacillus cereus ATCC 10876]
 gi|228594281|gb|EEK52076.1| UvrD/REP helicase [Bacillus cereus ATCC 10876]
          Length = 778

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 95/267 (35%), Gaps = 46/267 (17%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKETRVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +   + +   +R    T +    T     L     A +   KK       +D+   T ++
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTD--ASWVTEKKTKEW---DDICSLTVNM 509

Query: 160 LKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L        
Sbjct: 510 LDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF------- 562

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   +  +GD  Q+I++ H +E         +     TN       I L  S+RST
Sbjct: 563 ----PAARMTVLGDFNQAIFA-HASETVNFNTLTSLYGPDETNG------INLTRSYRST 611

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTT 294
             I+     +    +N      D    
Sbjct: 612 KPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|229154722|ref|ZP_04282837.1| UvrD/REP helicase [Bacillus cereus ATCC 4342]
 gi|228628670|gb|EEK85382.1| UvrD/REP helicase [Bacillus cereus ATCC 4342]
          Length = 777

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 95/270 (35%), Gaps = 52/270 (19%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKEAKVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKST---LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +   + +   +R    T +    T       T A ++        K       +D+   T
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTDASWVTGE-----KPKNW---DDICSLT 506

Query: 157 NDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L     
Sbjct: 507 VNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF---- 562

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +  +GD  Q+I++ H +E         +     TN       I L  S+
Sbjct: 563 -------PAARMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------INLTRSY 608

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           RST  I+     +    +N      D    
Sbjct: 609 RSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|255262129|ref|ZP_05341471.1| double-strand break repair protein AddB [Thalassiobium sp. R2A62]
 gi|255104464|gb|EET47138.1| double-strand break repair protein AddB [Thalassiobium sp. R2A62]
          Length = 978

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 105/352 (29%), Gaps = 36/352 (10%)

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           +RI+    A+  ++ +V L      V+  +      +  ++ D  G+ +   +     + 
Sbjct: 560 IRILGTLEARVNDADLVILGGLNDGVWPERPTPDPWLNRTMRDKAGLLLPERRIGLSAHD 619

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               I   +                     + + +   + + +    R    +V      
Sbjct: 620 YQQAIGASE---------------------VWLTRSVRSDDSETVPSRWVNRLVNLLGGL 658

Query: 692 DERVKKIKLTNSINKDE-WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
            ++     L   I + + WI Y  +   P       +          +  +   + IK  
Sbjct: 659 PDQYGLDALKAMIARGDTWINYARAMDQPNTVTKPAQRPSPCPPISARPVQLSVTRIKTL 718

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
           I +PY +    +   G   L  L        RG  +H + +        +      +   
Sbjct: 719 IRDPYAVYAEKV--LGLRPLNPLTPSPDAPLRGTTMHSIFERFIRERGPETLEEARTRLM 776

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK--------DI 862
             A+     +     +    +     +      D    VS++  +   K+          
Sbjct: 777 TIARTVMDADTPWPTIREMWMARLDRIADQFLADEAKRVSIATPVLFEKQGGTRIDHLGF 836

Query: 863 IISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            ++ R D++       I+I++YKT     +E +        QL +   +++ 
Sbjct: 837 TLTARADRMDQDDAQNIYIYDYKTGAAPTKEQQTYFDK---QLLLEAAMVER 885


>gi|126738528|ref|ZP_01754233.1| hypothetical protein RSK20926_08687 [Roseobacter sp. SK209-2-6]
 gi|126720327|gb|EBA17033.1| hypothetical protein RSK20926_08687 [Roseobacter sp. SK209-2-6]
          Length = 982

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/387 (12%), Positives = 110/387 (28%), Gaps = 38/387 (9%)

Query: 529 LDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           L  F +   +       S ++    L         R   A +  + I     A+   + +
Sbjct: 522 LALFEDLEAQALHGGEMSARDFADLLGAILSQGEVRDRDAPYGSIMIWGTLEARVQGADL 581

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V L       +         +   L    G+ +   +     +     I   +       
Sbjct: 582 VILGGLNEGSWPEAAKPDPWLNRQLRHQAGLLLPERRIGLAAHDFQQAIAAPE------- 634

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
                V +TRA+           ++E  +    W + + +                +   
Sbjct: 635 -----VWLTRAAR----------TDEADTVPSRWLNRLTNLLAGLPDQGGKAALTGMLDR 679

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPSTIDTKG 766
             +  +W+       P +  +           P++L  + I   I +PY +    +    
Sbjct: 680 GQVWLDWAEALEAPAPADPAKRPSPQPPVPSRPRRLTITEIPRLIRDPYAIYAKHV--LR 737

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
              L+ L+ +     RG+++H++ +      +   +    +  T  A     +     + 
Sbjct: 738 LRPLDPLVQEPDALLRGIVVHEVFEKFIKTCQDNPEGLTAANLTAMADELLQEHVPWPVA 797

Query: 827 SITRLLENPMMTTAM------SCDSYSEVSVSGKINCPKK--DIIISGRIDQISISQQN- 877
            +        +            +    V+   K     +  D  I+ R D+I   ++  
Sbjct: 798 RLLWHSRIEKLAEDFVTGEKERQNRARPVAFEAKGEARLEPLDFTIACRADRIDQDERGF 857

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           + +++YKT        E        QL
Sbjct: 858 LHLYDYKTGAPPS---EAQQKKFEKQL 881


>gi|320546488|ref|ZP_08040803.1| exonuclease RexB [Streptococcus equinus ATCC 9812]
 gi|320448873|gb|EFW89601.1| exonuclease RexB [Streptococcus equinus ATCC 9812]
          Length = 1081

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 84/712 (11%), Positives = 201/712 (28%), Gaps = 119/712 (16%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
              +   + +D + Q+     +A+ I + +                  + KDILVL+   
Sbjct: 290 DDDKKHYAIWDVINQKEEVEHVAKAIRHKL--------------YEGYRYKDILVLL--- 332

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            D          + + Y+I         ++DH  +  + +L R    +      + +LK+
Sbjct: 333 GDVDSYRLQIGKIFDKYEIPYYFGKSESMSDHPLVHFIDSLERVKRYRFRTEDVINLLKT 392

Query: 444 PLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            L+  F +DD+          +   +           K +  + +++++           
Sbjct: 393 GLYGQFKQDDLDLFEQYLIYADIKGQSKFAKEFTVNYKGKEHLAFMNQMREQIMVPLLML 452

Query: 503 FFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYS---------------- 545
           F           ++ ++      + D L+  +      EQ  +                 
Sbjct: 453 FKAQKQLGSSLLEKLMTFLRAISLPDNLEGMVATFPEIEQEKHEQVWRTFTGILNQFQTI 512

Query: 546 ------SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 SL E +S +       +        + V + +    +   +  VF +      F
Sbjct: 513 FGKEKLSLDECLSLVRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNKFVFALGMTQSHF 572

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                 +  I             + ++   N     + +   K        L        
Sbjct: 573 PKIAQNRSLISDEE------RAKVNENTDENQRFDVISRENIKKNHFAALSLFNAAT--- 623

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            +QL++      +  +        ++        ++ +     N  +   + A       
Sbjct: 624 -EQLVLSLPQIVNESEDKESSYLAELASFGVPVVKKGRNRLSANLEDIGNYKALLSRVIE 682

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSP----------------------------IKND 750
                +E E  + +           +                               +  
Sbjct: 683 VNRLAIEEERELSKEEQTFWSVAVRYLRKKLETQGIELPLIKDNMQTKPVASEVIETRFP 742

Query: 751 INEPYILNPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVI----FT 795
            ++P  L+ S + T      +  L                 N G  +H++ +++      
Sbjct: 743 SDKPINLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDESN 802

Query: 796 LPEHKRKNFITS-----------YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
            P   + N               Y       +     +++  S   +L+N         +
Sbjct: 803 QPFDTKLNQAIQKTNSEDEFKFVYEEDEESRYSLTVLEDIARSTASILKND--AQIQVEN 860

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
              E      I      + I G ID++   S  ++ + +YK+ H+   +I+        Q
Sbjct: 861 E--EEPFELMIANA---VRIRGIIDRVDRLSDGSLGVVDYKSSHNTF-DIQKFYNGLNPQ 914

Query: 904 LSIYEKILK----DSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           L  Y + L+     S  +K    + +++ EPKV +      +K    +S ++
Sbjct: 915 LVTYMQALRDKKGRSESDKIFGAMYLHMQEPKVDLSSVATTDKILENLSKEL 966


>gi|260887199|ref|ZP_05898462.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185]
 gi|260863261|gb|EEX77761.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185]
          Length = 1151

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 95/964 (9%), Positives = 241/964 (25%), Gaps = 134/964 (13%)

Query: 5   FGLSLNESYELIYKD--LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
                    E             F    +  +   +      T    A  +    +   +
Sbjct: 45  LPEHATYRAERRLAAMMAGAGEGFVRGLVFGFKRFARHVLQETGGAAAARITSVGKRLLL 104

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           +   +             ++   TQ + +   +++       D  ++ +       + + 
Sbjct: 105 KRILAEEGESLQAFARAAKQRGFTQTLERAMEEMRSYGID-GDALLQAQPALADDDLCRK 163

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                     + + Y E K      D  D++    D L ++  S+ +          + +
Sbjct: 164 LADL----ALIYSRYRE-KMAGRYNDTGDML----DALAEKIPSSRLLEG-----AEVWV 209

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE-KQSIYSFHGAEPKRVLREK 241
           D     +  + +++ +L +              +    D   ++     G+   R  +  
Sbjct: 210 DGFSFFNPQERKILAALFQKA--------KNVHITLTFDPTDEAAMQREGSLFYRQAQTL 261

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +  ++ A        +  L    R  +D L  +         A              +  
Sbjct: 262 QQLRRLAQEMQIPVRVRSLEERRRFQSDALAAI------ERTAFSFPLVPQAGAAGVALV 315

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                 +++                        +  + +   +LA         +     
Sbjct: 316 EAATRRLEMEAAAADIVRLCREKGLRWRDIAILTRDEAAYGDMLA-------LTLEDCGI 368

Query: 362 IFSNGKKRVIQAKDILVLVRKRKD---TPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +    KR      +  LVR   +         + R LK           +  L ++  +
Sbjct: 369 PYFRDNKREGVHHPLAELVRSAFEVLRGWRYDAMFRALKT--GFFKKTRGQIDLLENYVL 426

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           +  +    + + ++        L       ++ +  ++C        V E +Q+FA   +
Sbjct: 427 EFGIRGSSWTMEEDWHWHRRRSLDEEEEGATQKEAERLCQINSCRRAVAEPLQEFA-AQV 485

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTL 537
                V  Y   L  +                 +   +    R   ++ D +   L    
Sbjct: 486 KAASTVRGYAEALYRLLLALDVPQTLERWADEAEKAGRLAESREHRQIWDDVISLLEQMA 545

Query: 538 RNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               +    ++E    L +              + V +          +  ++++     
Sbjct: 546 ETSGDETIKVREFEDVLGDGLDALQISLIPPGLDYVTVADFDQNSVENARAIYILGANEG 605

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           V   +  +K  +  +               S     +                LLY G T
Sbjct: 606 VMPRRSQEKGLLSDADRLHLKEAGLELPQGSVEGSFN-------------ERFLLYKGFT 652

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            A D L +      +  K     +    +         ++ + L  +  +      +  T
Sbjct: 653 EARDYLWVSYALADTEGKALLPASLLGQIRTVLPAV-SLQTVPLEGAERRLFAGGRQAVT 711

Query: 717 HHPENTPLEREETIKQL----------------------------MDEQKIPKKLFSPIK 748
                    RE+                                     ++  K  +   
Sbjct: 712 ALAAALRSYREKGTLDPFWCDVYNWALGERKMSIVLQKVLQGIFSHAAAELLPKELAAAL 771

Query: 749 NDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ------ 791
              N     + +  ++                 E      +T + G+++H  L+      
Sbjct: 772 YTKNRRLRGSVTRFESFRACPFQHFARYGLHLAERPAHGFRTLDLGVLLHAALREFGERL 831

Query: 792 -----VIFTLPEHKRKNFITSYC------TKNAKLWPAKEYKNLLLSITRLLENP--MMT 838
                    + E +    +           +N  L  +K+Y+NLL+ I    +     + 
Sbjct: 832 KKDGRRWRDVGEEECGEILHEILGLLAPRLQNEILLSSKQYENLLVRIEETAKKALVRLI 891

Query: 839 TAMSCDSYSEVSVSGKIN-------------CPKKDIIISGRIDQISISQQNIF--IFEY 883
              +   +  V+                        + I+G+ID+I + +   +  I +Y
Sbjct: 892 ELDAASEFRPVAFERSFGRGAGSLPPLTYALADGSSLEITGQIDRIDMDEAGRYFLILDY 951

Query: 884 KTHH 887
           KT  
Sbjct: 952 KTGA 955


>gi|75758815|ref|ZP_00738929.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493719|gb|EAO56821.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 741

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 548 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 607

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 608 RLF-----------PAAKMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 649

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 650 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 686


>gi|50843084|ref|YP_056311.1| UvrD/Rep helicase [Propionibacterium acnes KPA171202]
 gi|289426503|ref|ZP_06428246.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|289428780|ref|ZP_06430463.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|50840686|gb|AAT83353.1| UvrD/Rep helicase [Propionibacterium acnes KPA171202]
 gi|289153231|gb|EFD01949.1| UvrD/REP helicase [Propionibacterium acnes SK187]
 gi|289158178|gb|EFD06398.1| UvrD/REP helicase [Propionibacterium acnes J165]
 gi|313808042|gb|EFS46523.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2]
 gi|313813490|gb|EFS51204.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1]
 gi|313819610|gb|EFS57324.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2]
 gi|313822065|gb|EFS59779.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1]
 gi|313823700|gb|EFS61414.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2]
 gi|313826023|gb|EFS63737.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1]
 gi|314924762|gb|EFS88593.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3]
 gi|314961951|gb|EFT06052.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2]
 gi|314978941|gb|EFT23035.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2]
 gi|315083626|gb|EFT55602.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2]
 gi|315087048|gb|EFT59024.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3]
 gi|315089223|gb|EFT61199.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1]
 gi|315106915|gb|EFT78891.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1]
 gi|327446327|gb|EGE92981.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2]
          Length = 751

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 111/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 663

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +V+   R      + +  F  +   I +   D     D 
Sbjct: 664 APVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|295116000|emb|CBL36847.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium
           SM4/1]
          Length = 284

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 77/301 (25%), Gaps = 64/301 (21%)

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
              DI VL R  +    I    R       I  +   R    +   +++     R +L  
Sbjct: 15  SFSDIAVLCRTHRQAEEIEECLR----KEGIPCIVTGRGEFLEAETVREATGFFRSLLYD 70

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL 491
             D                             E   +  ++         + V   + E 
Sbjct: 71  SSDT----------------------------EKAQQQSREIPFMKKRLGESVYGGLREK 102

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                   P +        +   +           + L++     L     +     + +
Sbjct: 103 YEPMMKKKPAELIRSYREDRGLLED----------EPLEKLTGMAL--FHRTMREFLDNL 150

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           +                 + V +MT+H AKGLE P V +          +          
Sbjct: 151 AFGADGDLRRCGEKRYTADAVSLMTLHAAKGLEFPAVIIAGVRKYSIPME---------- 200

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                       Q K              +  +EE  RL YVGMTRA ++LI+      S
Sbjct: 201 ----------PEQKKREEAGKITAESEEDRLKKEEERRLFYVGMTRAKEELILVTSGTES 250

Query: 672 N 672
            
Sbjct: 251 E 251


>gi|257459107|ref|ZP_05624226.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257443492|gb|EEV18616.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 970

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/437 (11%), Positives = 116/437 (26%), Gaps = 68/437 (15%)

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS 543
             ++  +      F       T +    K     +     E + ++   L        + 
Sbjct: 525 FGEFACDFAKQVSFEHFEALITKLACLPKISDALLQEKLKEPLYLIKILLRKFKDENLSL 584

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            + +   + E+ +              +V +M +  ++GL+   V + D    +   +  
Sbjct: 585 GNLIDLFLLEISRIKLD-----DVRGGKVTVMGLLESRGLQFDGVIIPDFNDDLVPKRSS 639

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
            +M +  +L    G+     +   +      L++  KKS                     
Sbjct: 640 GEMFLNSALRARAGLISHADRENLQRFYYDGLLRGAKKSAI-----------------CY 682

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +       +    +     D  +          + +   ++               +  P
Sbjct: 683 LQSVEKLPSRFLKSFEVQQDAEFSQEDYLRLFGREEFKPALCG-------------QEDP 729

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
           + R +   + +   ++   L    K      + L             E L         G
Sbjct: 730 VARHDFFAEELSFSRLDTFLECKRKYYYRYVFGLK------------EGLKFGEDNALLG 777

Query: 784 LIIHKLLQVIFTLP------EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
            I+H   Q ++         E  R  +           +  +     +  + RLLE    
Sbjct: 778 KILHTSFQRLYERAGMKFSMEKFRSIYSQLAREAGIARFDVELELKAVEKLARLLEGHEQ 837

Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHI 896
             + S            +      + +SGRID+I        FI +YK         +  
Sbjct: 838 IWSFSGS-------EVSLKGELDGVRLSGRIDRIDEDKAGRKFIIDYK-----RGSAKKH 885

Query: 897 PYTHIAQLSIYEKILKD 913
                 QL+ Y  +L  
Sbjct: 886 MEK--FQLTFYRALLAQ 900


>gi|74212626|dbj|BAE31051.1| unnamed protein product [Mus musculus]
 gi|74219614|dbj|BAE29576.1| unnamed protein product [Mus musculus]
          Length = 511

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 111/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 101 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 160

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 161 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 218

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 219 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 268

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 269 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 306

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 307 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 363

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 364 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 423

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +V+   R      + +  F  +   I +   D     D 
Sbjct: 424 APVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 464


>gi|47097166|ref|ZP_00234732.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 1/2a
            F6854]
 gi|254899031|ref|ZP_05258955.1| hypothetical protein LmonJ_04444 [Listeria monocytogenes J0161]
 gi|254937155|ref|ZP_05268852.1| ATP-dependent nuclease [Listeria monocytogenes F6900]
 gi|47014471|gb|EAL05438.1| ATP-dependent nuclease, subunit B [Listeria monocytogenes str. 1/2a
            F6854]
 gi|258609759|gb|EEW22367.1| ATP-dependent nuclease [Listeria monocytogenes F6900]
          Length = 1157

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 96/748 (12%), Positives = 195/748 (26%), Gaps = 169/748 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       IA  I  +               + +DI +L R   D  ++        
Sbjct: 307  QANNRRAEIEGIAREIRQLALNG----------YRYRDIAILTRNLGDYDVLCETVMEA- 355

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I    + +  +  H  I+ + +    IL + + +  F  +     F+ +E      
Sbjct: 356  --YNIPTFIDKKRAMAKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNR 413

Query: 453  --------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIKY---IHELIHIA 495
                          I        E + +Y  I+  +   + +    I     I+E+ ++ 
Sbjct: 414  RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLI 473

Query: 496  QF-CSPHDF--------FTLILGAKKGRQQFISRFGNEVIDVLDE---FLNFTLRNEQ-- 541
                S  +             L      +Q  +    E      E   +L     +EQ  
Sbjct: 474  VNPLSTLELNLRKAKTGMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAW 533

Query: 542  ---------------NSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
                                L      +              + ++V +  +  AK L+ 
Sbjct: 534  SSISVLLDEFVEVLGEETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDM 593

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V+F +     V   +   K        D         +  ++NNI              
Sbjct: 594  KVIFAIGMNDGVMPLRQKDKGIFSDQDRDALRAEDSKLKPSAKNNIG------------- 640

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E + L Y  ++  SD+L +   +     K  ++  +   +   F+       +   + ++
Sbjct: 641  EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFNELNESVYLTDPSLLS 700

Query: 706  KDE-------------------------------WIAYEWSTHHPENTPLEREETIKQLM 734
              E                               W     S    E   +  ++ +  L 
Sbjct: 701  DAEQSSYIRSKQATLGLLTSQLQMYKRGYTLSSVWWDAYNSYFENEKESIMAKQVLSSLY 760

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
             E K      +  KN   E    + S ++                  E      Q  + G
Sbjct: 761  YENKTKPLQETTAKNLFGETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQLQAVDMG 820

Query: 784  LIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
             I H  ++ I    +       N     C + AKL        +   I   L +  M   
Sbjct: 821  EIFHGAMEWISAELKRNNLDWGNLTEEECKQMAKLAMTFLAPKIQHEIL--LSSKRMEYI 878

Query: 841  M------------------SCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
                                  ++  V +                     ++++ GRID+
Sbjct: 879  QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDR 938

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCL 923
            I  +       + I +YK+  H    +  + Y    Q+  Y  I+         K+    
Sbjct: 939  IDMAEQDDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPA 997

Query: 924  --LIYVSEPKVF----IIPQNKLNKAFA 945
              L +    +       +    + K   
Sbjct: 998  GVLYFHMHNQYVQAEKELSDEAIAKELQ 1025


>gi|325696016|gb|EGD37907.1| exonuclease RexB [Streptococcus sanguinis SK160]
          Length = 1093

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 93/865 (10%), Positives = 233/865 (26%), Gaps = 125/865 (14%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           LI  T   L   ++  + R K D +    L+D   +    Q         +F        
Sbjct: 89  LIYRTLTELDDGELKVYGRIKKDPQFIQQLMDLYHELQTAQMSFADL---EFLEEPEKRE 145

Query: 212 SPRTLFAV-------GDEKQS--IYSFHG-----------AEPKRVLREKRINQKRATNA 251
               +F         GD   S  I  F             A+   V+             
Sbjct: 146 DLVKIFTAVTAALNEGDFDSSSQIADFAQHILAGDTDEELADLALVIDGFTRFSAEEEFL 205

Query: 252 GQKFSIIELPL---SFRSTADILTVV---DKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
                   + +   ++ S           +   +  +  + L+ED      +      + 
Sbjct: 206 VGLLHRKGVEIVIGTYASQKAYRAAFREGNLYQASVDFLRKLAEDYQVKPDYIPHAEAED 265

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFD-SLPQESSASILARRIAYTISNMIGTDTIFS 364
              ++ + + S++D      + S T      +    +       +A +I   +       
Sbjct: 266 AFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHDG---- 321

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                 ++ KDI +L+    D        + + + Y+I         +  H  ++ + +L
Sbjct: 322 ------VRYKDIRLLL---GDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESL 372

Query: 425 GRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            R           + +LK+ L+   +++++          +              S+ + 
Sbjct: 373 ERLKRYNFQLEDLLNLLKTGLYGDLTQEELDHFEQYLRFADIKGASKLAKDFTANSQGKF 432

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLN-------- 534
            +  ++ + H         F +    A     +F          D L   L         
Sbjct: 433 DLDRLNHIRHRVMTPLQDFFKSRSQTASGLLAKFTEFVQAARLSDNLTALLQGESQQEQE 492

Query: 535 -----------FTLRNEQNSYSSLQELISELEQ----YPPTIKRAHSANHNEVRIMTVHT 579
                         +  Q    S  +L   L         +  R   A  + V++ +   
Sbjct: 493 CHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTVPATVDVVKVQSYDL 552

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL----------NDDPGIPIWIPQSKSRN 629
            + L +P V+ +    + F      K  +                +  I       K+R 
Sbjct: 553 IEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRARLNEARDSQAELQIASSENLKKNRY 612

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-------SNTSNEKKSNQRTWY 682
             +S +    K+        +  V  + ++  L +                   +  ++ 
Sbjct: 613 TALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIVKKPQASSDDIGSYR 672

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            ++       +     +          +A            +   +  K+L  E    + 
Sbjct: 673 ALLSQIIELHQEEIDREWKAEEQTFWAVAVRVLRKKLAAEGISIPQISKELKTETLQSET 732

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQ 791
           L +    +  +P  L+ S ++   +              E         + G+ +H++ +
Sbjct: 733 LQALYPQE--QPLRLSASALNEYFRHQYAYFLKYVLRLQEEWTIHPDARSHGIFLHRIFE 790

Query: 792 VI--FTLPEHKRKNFITSYCT-----KNAKLWPAKEYKNLLLSIT--------RLLENPM 836
            +          +    +        +   ++           +         R+L +P 
Sbjct: 791 KVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTRFARQLLLDTARATGRVLAHPS 850

Query: 837 MTTAMSCDSYSEVSVSGKINCPKKD-IIISGRIDQISISQQNIF------IFEYKTHHHV 889
               +  ++    + +  +       + +SG++D+I      +       + +YK+    
Sbjct: 851 GIETIGEETGFGSASTPFLTLENGRAVTVSGKVDRI----DRLTKTESLGVVDYKSGDIK 906

Query: 890 PQEIEHIPYTHIAQLSIYEKILKDS 914
               E       +QL  Y   +++ 
Sbjct: 907 F-SFEKFFNGLNSQLPTYLAAIEEL 930


>gi|326406563|gb|ADZ63634.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis
           CV56]
          Length = 268

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 29/202 (14%)

Query: 752 NEPYILNPSTIDTKGKTNLESLL--------SDNQTFNRGLIIHKLLQ---VIFTLPEHK 800
            E    + S I T  +               S  +    G   H +L+         +  
Sbjct: 3   EEKPRFSFSDIRTFQECPFRLRERKAKRYAESPTEAMLVGSYAHAMLEGDKSTDDFIQEH 62

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
             + + +   KN  +   K +K++++++  + +     +  +  ++ E+     I     
Sbjct: 63  SVDMMGNIGKKNQGI--KKVFKDIVMAVNEVKKTETYQSFDTLHTHKELY----IRADYD 116

Query: 861 DIIISGRIDQI-SISQQNIF-IFEYKTHHHVPQEIEHIPY-------THIAQLSIYEKIL 911
           D +ISGRID +    +  I  I ++KT        +            +  QL++Y  ++
Sbjct: 117 DFVISGRIDVLRFDHENKIIEIIDWKTAASFEDIFDKNIRAYLEWYSHYREQLALYAWLV 176

Query: 912 KDSYPNKSLVCLLIYVSEPKVF 933
              + +      L Y    K+ 
Sbjct: 177 AQEFSDY---TKLDYTVVGKIV 195


>gi|42524525|ref|NP_969905.1| putative exonuclease [Bdellovibrio bacteriovorus HD100]
 gi|39576734|emb|CAE80898.1| putative exonuclease [Bdellovibrio bacteriovorus HD100]
          Length = 907

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 68/525 (12%), Positives = 142/525 (27%), Gaps = 89/525 (16%)

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
           ++ +L+S     S  D+     ++ E + +             +F+ + K ++    +A+
Sbjct: 325 WLALLRSKSGRLSTSDLEISFFEKEEAQQL----------RYEEFRSLFKSLYVNEDLAR 374

Query: 497 FCSPHDFFTLILGAKKGRQQ-------FISRFGNE---VIDVLDEFLNFTLRNEQNSYSS 546
               H  F   +      ++        +S   +E   V  VL E L   +     ++  
Sbjct: 375 NEIVHKVFFEQMDLGGFLKRDEFVAKALLSWNSDETDIVQVVLRELLQNAVAGTSLTWKE 434

Query: 547 LQELISELEQYPPTIKRAHSANHNEV-RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
               +  +                 V ++M+ H+ K      V L D   +  +   +  
Sbjct: 435 WLSYLESIVAAKEYTLEKGEPRGIMVTKLMSAHSEKARRRIFVGLTDEALKGRNKTQLSG 494

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                   D                          +S  E   RLL      + + L   
Sbjct: 495 QDYFELAKDIGFYLDNP-----------------DQSDLEFELRLLAEAD--SDEDLYCF 535

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
             ++ S    S    W  +            + +      +  W   + ST   E   L 
Sbjct: 536 GATDLSGSLCSPATFWMSL----------QGEHEKLTVPLETRWDELQHSTQRGERPLLA 585

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN-------- 777
             + + +    Q + K  F+ I +   E   ++ S +++  +                  
Sbjct: 586 GRKELVEQRILQDLGKVPFATITSP--ELPRISASAVESFLECPFIFAAQRYFKLKDLPD 643

Query: 778 -----QTFNRGLIIHKLLQVIFTLPE--HKRKNFITSYCT---------KNAKLWPAKEY 821
                    RG + H + + +   P     +   +                 +       
Sbjct: 644 IDLDVDHRTRGQLAHAIFEKLTIEPMRFDWKVEELDQLLETVRVEKKLVFADERLWTPLK 703

Query: 822 KNLLLSITRLLE-NPMMTTAMSCDS--YSEVSVSGKINCPKKDI---------IISGRID 869
           K  +    R L+                 E      ++    DI          ISG+ID
Sbjct: 704 KKHIQLGLRFLDFEKRWREEFKKTRTIGREKRFEFYLDPQSGDISTEARDNCFRISGQID 763

Query: 870 QISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           +I       + + +YK+              H  QL  Y  +L+ 
Sbjct: 764 RIDSDGGKQLVVVDYKSSSGGISAHGSWLKNHELQLLFYMWVLEK 808


>gi|158422337|ref|YP_001523629.1| hypothetical protein AZC_0713 [Azorhizobium caulinodans ORS 571]
 gi|158329226|dbj|BAF86711.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 1015

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/447 (10%), Positives = 107/447 (23%), Gaps = 43/447 (9%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
            +R     V E  Q  A   +++    ++ +  L    +          I   +      
Sbjct: 484 HERDPRRRVGEDRQALAADLVARLVPALEPLSALAEAGKVPLADLVAAHIATIESLTAPL 543

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISEL-EQYPPTIKRAHSANHNEVRIM 575
                +     L E L           + +L      +       + R        +RI+
Sbjct: 544 DPDANDPAWASLAEALIDIRDGAPAGPAMTLAAYADAISALLADRVVRPRQRGEERIRIL 603

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+ +    V L       +  +      +   +  + G+     +     +  +  
Sbjct: 604 GPLEARLVAVDRVVLGGLVEGSWPPETRTDPWLSRPMRAELGLDQPERRIGLAAHDFAQA 663

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                                    ++++         +    R    +   +  +  + 
Sbjct: 664 FGA---------------------REVVLTYPDKVGGTQSVPSRFLQRLSTVAGEDLWQA 702

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
              +           A+  +    ++ P             +++  K  S  + +     
Sbjct: 703 AIARGE---------AWRQAAARLDDGPRVPRAAQPAPKPPRELRPKKLSVTEVETFLRD 753

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKL 815
             +           LE+L +      RG  +H  L                +      + 
Sbjct: 754 PYSIFARHVLALQPLEALDAAPGGAERGSALHDALGAFAKDYPEDLPPDAHAQLLAYGRR 813

Query: 816 WPA------KEYKNLLLSITR----LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS 865
                     E+        R    ++E      A      +E      I     D  ++
Sbjct: 814 AFEKLEVFPAEHAIWWARFERVAAFVVEFERERRASLKRVVAETGGGLPIRLLHSDFQLT 873

Query: 866 GRIDQI-SISQQNIFIFEYKTHHHVPQ 891
           GR D+I   +   + I +YKT      
Sbjct: 874 GRADRIEIRTDGELNILDYKTGTAPSA 900


>gi|71906107|ref|YP_283694.1| hypothetical protein Daro_0467 [Dechloromonas aromatica RCB]
 gi|71845728|gb|AAZ45224.1| conserved hypothetical protein [Dechloromonas aromatica RCB]
          Length = 912

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/364 (10%), Positives = 93/364 (25%), Gaps = 55/364 (15%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               ++++ V  + GL    ++++      +         +   +    G          
Sbjct: 453 GRPAIQVLGVLESAGLGFDALWVMGMNDDQWPPPPRPNPLLPAEMLRAVGA--------- 503

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                     H     + ++ R ++V ++ ++  +         N           +   
Sbjct: 504 ---------AHASAEVELDFARRVHVRLSHSAPVVTFSYARAEGNRVLRPSPLIAGIPLA 554

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
              N E     +    +        + +   P     +       L  +   P   +   
Sbjct: 555 GEKNAELETLARQMAGVAVSSVDQIDDALAPPVAEGEKVSGGSWVLRAQAICPAWAYYQY 614

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ----------VIFTLP 797
           +                      E  +       RG ++H+ L+           +  L 
Sbjct: 615 RLGGEAM----------------EEPVEGLDPAARGTLVHEALEAFWTAIASFDALVALD 658

Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE--------- 848
           E  R+  I+    K  + +       L       LE   +   +      E         
Sbjct: 659 EAAREQAISEAVGKALQHFELDRRTTLPARFRE-LEAARLAKLLDLWLQVEARRGLPFEV 717

Query: 849 VSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           V+         + I +   +D+I   +     I +YKT   +  +          QL IY
Sbjct: 718 VACEQPAEVEIEGIKVKMVVDRIDRLADGRQIIIDYKTGAAIDTKNWAEQRITEPQLPIY 777

Query: 908 EKIL 911
             ++
Sbjct: 778 AALV 781


>gi|289751891|ref|ZP_06511269.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92]
 gi|289692478|gb|EFD59907.1| UvrD/Rep family helicase [Mycobacterium tuberculosis T92]
          Length = 364

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/401 (11%), Positives = 93/401 (23%), Gaps = 81/401 (20%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                    +   T     +  + T        +L+  L +  +  +   +     +   
Sbjct: 32  WPGDAEDGPAATTTWPAHLRPALTTAGFAT---ELRNLLARCAERGLDPLELQQLGRCRG 88

Query: 122 STLASLTLAKYLNAHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWI 169
                   A      YE+                   L   +L+    +      V   +
Sbjct: 89  RPE--WIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFA---VDPEL 143

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                  +  +L+D+ Q        ++R L     +              GD  Q+++ F
Sbjct: 144 LAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELA----------LIAGDPNQAVFGF 193

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            G EP  +L             G     + L +S R    +   V  +            
Sbjct: 194 RGGEPTGLLA-----DDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRR 248

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
              T     S  +   G+                                      A   
Sbjct: 249 IEGTGTEVGSVTVRLAGS--------------------------------------AHAE 270

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I++ +    +        +    + V+VR       +               VG   
Sbjct: 271 AAMIADALRRAHLID-----GVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGG-- 323

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             L+   A++ L+ +        D    + +L  P+     
Sbjct: 324 -PLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDP 363


>gi|237725570|ref|ZP_04556051.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436257|gb|EEO46334.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 959

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/396 (14%), Positives = 112/396 (28%), Gaps = 68/396 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++M V   + L+   + L+                I  +L    G+     +      
Sbjct: 519 GMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHK------ 572

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I        +   + E   L+Y                NTS++  +       M+     
Sbjct: 573 IAVYAYYFYRLLQRAERITLMY----------------NTSSDGLNRGEWSRFMLQFLIE 616

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               + +  L    +          T       + R   ++ L D +  PK  FSP   +
Sbjct: 617 WPHPITRQFLEAGQSP---QGTSPITVEKTPDVMRR---MQSLFDVRANPKAKFSPSALN 670

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFIT 806
                 L        G +  + + ++  +   G I H   +     + T  +   K  + 
Sbjct: 671 YYLDCPLKFYYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALE 730

Query: 807 SYCTKNAKLWP--AKEYKNL--------------LLSITRLLENPMMTTAMSCDSY---- 846
           +      KL       +K L              +  I   +    +   +  D      
Sbjct: 731 TLLRNEVKLQDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDLRYAPF 790

Query: 847 ----SEVSVSGKINCPKKDIIIS----GRIDQISISQQNIFIFEYKT----HHHVPQE-- 892
               SE+ V   I+      +I     G ID++      + I +YKT          E  
Sbjct: 791 TFIASEMEVDEPIDIQTPKGVIKSRIGGIIDRMDSKDGTLRIVDYKTGGDADTPPHVESL 850

Query: 893 --IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
              +     ++ Q  +Y  I+    P   +   L+Y
Sbjct: 851 FIPDKKRSNYVFQTFLYAAIMCRKQPTMKIAPALLY 886


>gi|168207165|ref|ZP_02633170.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens E str. JGS1987]
 gi|170661460|gb|EDT14143.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens E str. JGS1987]
          Length = 763

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 61/209 (29%), Gaps = 33/209 (15%)

Query: 134 NAHYEEAKKKNCV----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A Y      N +    +D +DL        +   +      K      HI+IDE QD S
Sbjct: 491 LAEYMRENLANNIDKKIIDSDDLAAMLYLKFRIEGMEESSLLK------HIVIDEAQDYS 544

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           ++Q  V+  +              ++L  VGD  Q IYSF G             +    
Sbjct: 545 MLQLYVMSMMAS-----------GKSLTIVGDIGQGIYSFKG---------INDWKDAIK 584

Query: 250 -NAGQKFSIIELPLSFRSTADILTVVDKVF--SIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               +      L  S+RST +I+   +KV                   +           
Sbjct: 585 LVYDENAEYKHLSQSYRSTVEIINYANKVLVKQNTYEEPAKPVLRHGMVPEEIEFNNAKE 644

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +  + +V +   +            D 
Sbjct: 645 FCERLDCIVKKVKDEGKTSIAIVGKTLDE 673


>gi|254912828|ref|ZP_05262840.1| ATP-dependent nuclease [Listeria monocytogenes J2818]
 gi|293590825|gb|EFF99159.1| ATP-dependent nuclease [Listeria monocytogenes J2818]
          Length = 1157

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 99/749 (13%), Positives = 202/749 (26%), Gaps = 171/749 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       IA  I  +               + +DI +L R   D  ++        
Sbjct: 307  QANNRRAEIEGIAREIRQLALNG----------YRYRDIAILTRNLGDYDVLCETVMEA- 355

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I    + +  +  H  I+ + +    IL + + +  F  +     F+ +E      
Sbjct: 356  --YNIPTFIDKKRAMAKHPFIEFIRSSLDAILFNCKYEPIFQAVKTEFFFDITEKSSLNR 413

Query: 453  --------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIKY---IHELIHIA 495
                          I        E + +Y  I+  +   + +    I     I+E+ ++ 
Sbjct: 414  RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLI 473

Query: 496  QF-CSPHDF--------FTLILGAKKGRQQFISRFGNEVIDVLDE---FLNFTLRNEQNS 543
                S  +             L      +Q  +    E      E   +L     +EQ  
Sbjct: 474  VNPLSTLELNLRKAKTGMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQA- 532

Query: 544  YSSLQELISELEQYPPTIKRAHSA-------------------NHNEVRIMTVHTAKGLE 584
            +SS+  L+ E  +          +                   + ++V +  +  AK L+
Sbjct: 533  WSSISVLLDEFVEVLGEETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLD 592

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V+F +     V   +   K        D         +  ++NNI             
Sbjct: 593  MKVIFAIGMNDGVMPLRQKDKGIFSDQDRDALRAEDSKLKPSAKNNIG------------ 640

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             E + L Y  ++  SD+L +   +     K  ++  +   +   F+       +   + +
Sbjct: 641  -EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFNELNESVYLTDPSLL 699

Query: 705  NKDE-------------------------------WIAYEWSTHHPENTPLEREETIKQL 733
            +  E                               W     S    E   +  ++ +  L
Sbjct: 700  SDAEQSSYIRSKQATLGLLTSQLQMYKRGYTLSSVWWDAYNSYFENEKESIMAKQVLSSL 759

Query: 734  MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNR 782
              E K      +  KN   E    + S ++                  E      Q  + 
Sbjct: 760  YYENKTKPLQETTAKNLFGETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQLQAVDM 819

Query: 783  GLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            G I H  ++ I    +       N     C + AKL        +   I   L +  M  
Sbjct: 820  GEIFHGAMEWISAELKRNNLDWGNLTEEECKQMAKLAMTFLAPKIQHEIL--LSSKRMEY 877

Query: 840  AM------------------SCDSYSEVSVSGKINCPKK------------DIIISGRID 869
                                   ++  V +                     ++++ GRID
Sbjct: 878  IQYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRID 937

Query: 870  QI--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVC 922
            +I  +       + I +YK+  H    +  + Y    Q+  Y  I+         K+   
Sbjct: 938  RIDMAEQDDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEP 996

Query: 923  L--LIYVSEPKVF----IIPQNKLNKAFA 945
               L +    +       +    + K   
Sbjct: 997  AGVLYFHMHNQYVQAEKELSDEAIAKELQ 1025


>gi|260903704|ref|ZP_05912026.1| hypothetical protein BlinB_00115 [Brevibacterium linens BL2]
          Length = 250

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 18/152 (11%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKR-KNFITSYC------------TKNAKLWPAK 819
               +Q   RG ++H +L+ +F LP  +R ++   S                        
Sbjct: 12  PEPPSQAAFRGTVVHSVLEKLFELPAARRTQDVAESLLRPSWDELVDKDPEVLEIFGDEG 71

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNI 878
           E +    +   LL     +         E +           + + G ID++ ++     
Sbjct: 72  EKETFFTTAANLLR-AYFSLEFPEHLEPEQTEKYVRTQLDNGLELRGFIDRVDVAPGGEK 130

Query: 879 FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
            + +YKT      +          Q+  Y  +
Sbjct: 131 RLVDYKTGKQPKPQYGREA---HFQMGFYALV 159


>gi|228965754|ref|ZP_04126833.1| UvrD/Rep helicase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228793955|gb|EEM41479.1| UvrD/Rep helicase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 691

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD    Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFPPFQVYVVKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   +++    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANEIIKNAEIPVGLA 553


>gi|42781896|ref|NP_979143.1| uvrD/Rep helicase family protein [Bacillus cereus ATCC 10987]
 gi|42737820|gb|AAS41751.1| uvrD/Rep helicase family protein [Bacillus cereus ATCC 10987]
          Length = 689

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 21/117 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I Q+ +H++IDE QD S  Q  V++ +T              +   +GD  Q+IY + G
Sbjct: 458 EIGQKFHHVVIDEAQDFSTFQVYVLKEITL-----------GNSFTILGDLSQAIYDYQG 506

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
              +     K + Q+            EL  S+RST +I+   + +    E   GL+
Sbjct: 507 --IEDWSAFKEVFQETGY--------YELTRSYRSTKEIIEFANGIIKNAEIPVGLA 553


>gi|330839035|ref|YP_004413615.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185]
 gi|329746799|gb|AEC00156.1| ATP-dependent nuclease subunit B [Selenomonas sputigena ATCC 35185]
          Length = 1144

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 94/964 (9%), Positives = 240/964 (24%), Gaps = 134/964 (13%)

Query: 5   FGLSLNESYELIYKD--LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
                    E             F    +  +   +      T    A  +    +   +
Sbjct: 38  LPEHATYRAERRLAAMMAGAGEGFVRGLVFGFKRFARHVLQETGGAAAARITSVGKRLLL 97

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
           +   +             ++   TQ + +   +++       D  ++ +       + + 
Sbjct: 98  KRILAEEGESLQAFARAAKQRGFTQTLERAMEEMRSYGID-GDALLQAQPALADDDLCRK 156

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                     + + Y E        D  D++    D L ++  S+ +          + +
Sbjct: 157 LADL----ALIYSRYREKMAGRYN-DTGDML----DALAEKIPSSRLLEG-----AEVWV 202

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE-KQSIYSFHGAEPKRVLREK 241
           D     +  + +++ +L +              +    D   ++     G+   R  +  
Sbjct: 203 DGFSFFNPQERKILAALFQKA--------KNVHITLTFDPTDEAAMQREGSLFYRQAQTL 254

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
           +  ++ A        +  L    R  +D L  +         A              +  
Sbjct: 255 QQLRRLAQEMQIPVRVRSLEERRRFQSDALAAI------ERTAFSFPLVPQAGAAGVALV 308

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                 +++                        +  + +   +LA         +     
Sbjct: 309 EAATRRLEMEAAAADIVRLCREKGLRWRDIAILTRDEAAYGDMLA-------LTLEDCGI 361

Query: 362 IFSNGKKRVIQAKDILVLVRKRKD---TPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
            +    KR      +  LVR   +         + R LK           +  L ++  +
Sbjct: 362 PYFRDNKREGVHHPLAELVRSAFEVLRGWRYDAMFRALKT--GFFKKTRGQIDLLENYVL 419

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI 478
           +  +    + + ++        L       ++ +  ++C        V E +Q+FA   +
Sbjct: 420 EFGIRGSSWTMEEDWHWHRRRSLDEEEEGATQKEAERLCQINSCRRAVAEPLQEFA-AQV 478

Query: 479 SKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-RFGNEVIDVLDEFLNFTL 537
                V  Y   L  +                 +   +    R   ++ D +   L    
Sbjct: 479 KAASTVRGYAEALYRLLLALDVPQTLERWADEAEKAGRLAESREHRQIWDDVISLLEQMA 538

Query: 538 RNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               +    ++E    L +              + V +          +  ++++     
Sbjct: 539 ETSGDETIKVREFEDVLGDGLDALQISLIPPGLDYVTVADFDQNSVENARAIYILGANEG 598

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           V   +  +K  +  +               S     +                LLY G T
Sbjct: 599 VMPRRSQEKGLLSDADRLHLKEAGLELPQGSVEGSFN-------------ERFLLYKGFT 645

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
            A D L +      +  K     +    +         ++ + L  +  +      +  T
Sbjct: 646 EARDYLWVSYALADTEGKALLPASLLGQIRTVLPAV-SLQTVPLEGAERRLFAGGRQAVT 704

Query: 717 HHPENTPLEREETIKQL----------------------------MDEQKIPKKLFSPIK 748
                    RE+                                     ++  K  +   
Sbjct: 705 ALAAALRSYREKGTLDPFWCDVYNWALGERKMSIVLQKVLQGIFSHAAAELLPKELAAAL 764

Query: 749 NDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQ------ 791
              N     + +  ++                 E      +T + G+++H  L+      
Sbjct: 765 YTKNRRLRGSVTRFESFRACPFQHFARYGLHLAERPAHGFRTLDLGVLLHAALREFGERL 824

Query: 792 -----VIFTLPEHKRKNFITSYC------TKNAKLWPAKEYKNLLLSITRLLENP--MMT 838
                    + E +    +           +N  L  +K+Y+NLL+ I    +     + 
Sbjct: 825 KKDGRRWRDVGEEECGEILHEILGLLAPRLQNEILLSSKQYENLLVRIEETAKKALVRLI 884

Query: 839 TAMSCDSYSEVSVSGKIN-------------CPKKDIIISGRIDQISISQQNIF--IFEY 883
              +   +  V+                        + I+G+ID+I + +   +  I +Y
Sbjct: 885 ELDAASEFRPVAFERSFGRGAGSLPPLTYALADGSSLEITGQIDRIDMDEAGRYFLILDY 944

Query: 884 KTHH 887
           KT  
Sbjct: 945 KTGA 948


>gi|283953895|ref|ZP_06371425.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794674|gb|EFC33413.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 392

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 6/104 (5%)

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK----KKNCVLDFEDLIINTNDLLKKRD 164
           ++ +  N Y +         L   L  HY EAK    K    L+F+D+     +L+   D
Sbjct: 261 ELINALNAYAIELENYKIANLMN-LLNHYNEAKNILHKDKNTLNFQDVSKKVYELIT-SD 318

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
               I +++D  I+H+LIDE QDTS+IQ++++R L  +   G+ 
Sbjct: 319 FKDMIYFRLDGFISHLLIDEFQDTSVIQYQILRPLIAELVSGEG 362


>gi|237709836|ref|ZP_04540317.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455929|gb|EEO61650.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 959

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/396 (13%), Positives = 111/396 (28%), Gaps = 68/396 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++M V   + L+   + L+                I  +L    G+     +      
Sbjct: 519 GMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHK------ 572

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I        +   + E   L+Y                NTS++  +       M+     
Sbjct: 573 IAVYAYYFYRLLQRAERITLIY----------------NTSSDGLNRGEWSRFMLQFLIE 616

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               + +  L    +     +             +    ++ L D +  PK  FSP   +
Sbjct: 617 WPHPITRQFLEAGQSPQGTSSITVEKTP------DVMRQMQSLFDVRANPKAKFSPSALN 670

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFIT 806
                 L        G +  + + ++  +   G I H   +     + T  +   K  + 
Sbjct: 671 YYLDCPLKFYYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALE 730

Query: 807 SYCTKNAKLWP--AKEYKNL--------------LLSITRLLENPMMTTAMSCDSY---- 846
           +      KL       +K L              +  I   +    +   +  D      
Sbjct: 731 TLLRNEVKLQDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDLRYAPF 790

Query: 847 ----SEVSVSGKINCPKKDIIIS----GRIDQISISQQNIFIFEYKT----HHHVPQE-- 892
               SE+ V   I+      +I     G ID++      + I +YKT          E  
Sbjct: 791 TFIASEMEVDEPIDIQTPKGVIKSRIGGIIDRMDSKDGTLRIVDYKTGGDADTPPHVESL 850

Query: 893 --IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
              +     ++ Q  +Y  I+    P   +   L+Y
Sbjct: 851 FIPDKKRSNYVFQTFLYAAIMCRKQPTMKIAPALLY 886


>gi|219854981|ref|YP_002472103.1| hypothetical protein CKR_1638 [Clostridium kluyveri NBRC 12016]
 gi|219568705|dbj|BAH06689.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 829

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 25/173 (14%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             ++    + +          +   L   Y +  +K+  +DF D+ +   +     +  +
Sbjct: 192 RTLKKSGESPQKLMKNSEIRRVIFELMTLYNKKLRKSGHIDFGDMALMALE-----EAKS 246

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +  K      HI++DE QD +  Q E +++L               +   V D  QSIY
Sbjct: 247 NVVKK----YTHIIVDESQDLTRTQLEFLKNLY--------LQKEYSSFMFVADTAQSIY 294

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           +         L + R                 L  S+R+T  I      +   
Sbjct: 295 THSW------LVKGRSFASI--GFDMTGKSNILSKSYRTTTQISQAAYSLIEK 339



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 35/130 (26%)

Query: 547 LQELISELEQYP----PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           L  +   LEQ         K   + + + ++++T+H+ KGLE  VV +V        H  
Sbjct: 403 LNNMKRNLEQNKIPNILVSKNDENFDSDNIKLITMHSIKGLEFKVVIIVGLNEGTIPHIS 462

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                +K  +    +LLYVGMTRA+++L
Sbjct: 463 YGG-------------------------------SEEQKIQESIERKLLYVGMTRATEKL 491

Query: 663 IICKHSNTSN 672
            +      S 
Sbjct: 492 YLTSSGKPSR 501


>gi|153954390|ref|YP_001395155.1| hypothetical protein CKL_1765 [Clostridium kluyveri DSM 555]
 gi|146347271|gb|EDK33807.1| Conserved hypothetical protein with LexA domain [Clostridium
           kluyveri DSM 555]
          Length = 815

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 25/173 (14%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
             ++    + +          +   L   Y +  +K+  +DF D+ +   +     +  +
Sbjct: 178 RTLKKSGESPQKLMKNSEIRRVIFELMTLYNKKLRKSGHIDFGDMALMALE-----EAKS 232

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +  K      HI++DE QD +  Q E +++L               +   V D  QSIY
Sbjct: 233 NVVKK----YTHIIVDESQDLTRTQLEFLKNLY--------LQKEYSSFMFVADTAQSIY 280

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           +         L + R                 L  S+R+T  I      +   
Sbjct: 281 THSW------LVKGRSFASI--GFDMTGKSNILSKSYRTTTQISQAAYSLIEK 325



 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 35/130 (26%)

Query: 547 LQELISELEQYP----PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           L  +   LEQ         K   + + + ++++T+H+ KGLE  VV +V        H  
Sbjct: 389 LNNMKRNLEQNKIPNILVSKNDENFDSDNIKLITMHSIKGLEFKVVIIVGLNEGTIPHIS 448

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                                                +K  +    +LLYVGMTRA+++L
Sbjct: 449 YGG-------------------------------SEEQKIQESIERKLLYVGMTRATEKL 477

Query: 663 IICKHSNTSN 672
            +      S 
Sbjct: 478 YLTSSGKPSR 487


>gi|39933155|ref|NP_945431.1| hypothetical protein RPA0075 [Rhodopseudomonas palustris CGA009]
 gi|39652780|emb|CAE25519.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 1049

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/364 (10%), Positives = 92/364 (25%), Gaps = 46/364 (12%)

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +   + R        +RI     A+  +   V L      V+         +   +  +
Sbjct: 607 AFGDRVVRRPELAEAPIRIYGPLEARLTQQDRVVLGGLVEGVWPPAPRIDPWLSRPMRHE 666

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            G+ +   +     +  +  +                       D++ I   +       
Sbjct: 667 LGLDLPERRIGLSAHDFAQALGA---------------------DEVFITHAAKVGGAPA 705

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM- 734
              R  + +   +  +  +  K +    ++    +    S               + L  
Sbjct: 706 VASRFLHRLEAVAGEDRWKAMKARGQTYLDYTHELDRPESVTPIAQPAPRPPRIARPLKL 765

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
               I   L  P          L+P          L+ +       +RG  IH  L    
Sbjct: 766 PVTAIEDWLRDPYTIYAKYILRLSP----------LDPVDMSLSGADRGSAIHAALGEFT 815

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----------D 844
              +    +   +   +  +   A    +             + T  +            
Sbjct: 816 ERYQDALPDDPVTALRQIGQKHFAPLMDHAEARALWWPRFLRIATWFAAWEQQRRTGVVQ 875

Query: 845 SYSEVSVSGKINCPKK-DIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
             +E   +  I    + +  +S R D+I      +  I +YKT H      + +      
Sbjct: 876 VQAERRGTLMIPLGGERNFELSARADRIERRDDGSYAILDYKTGHPP--TGKQVRMGLSP 933

Query: 903 QLSI 906
           QL++
Sbjct: 934 QLTL 937


>gi|322805639|emb|CBZ03204.1| ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog
           [Clostridium botulinum H04402 065]
          Length = 322

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 70/205 (34%), Gaps = 39/205 (19%)

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF 535
             I KF+ + + I  L  ++   +P D    I+   K ++ +  ++    I+ L EF   
Sbjct: 141 KYIKKFEPIYEEITNLKKLSYIKNPKDIIGEIVNKTKIKEIYKDQYIK--INNLREFFVI 198

Query: 536 TLRNEQNSYSSLQELISEL--EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
               E    SS   LI  L       +        +  V I+TVH AKG E   VFL   
Sbjct: 199 AKEIENKEISSRDNLIELLKITSLSNSELDRMLTKYPRVPIITVHQAKGAEFDYVFLAGL 258

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
            + +F +                                      +K+  + E  RL YV
Sbjct: 259 QNNIFPN-----------------------------------YMAVKEGNEIEEKRLFYV 283

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQ 678
            MTRA   L +       N +K+  
Sbjct: 284 AMTRAKKYLYLSFSEYEHNRRKAKS 308


>gi|45505283|gb|AAS67013.1| AddB [Rhizobium etli]
          Length = 1064

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/400 (11%), Positives = 91/400 (22%), Gaps = 48/400 (12%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               + +E  D L   L   +  + Q      Q +            +  + NH  + I 
Sbjct: 584 LADLWSHEAGDALASLLGEVIDTDGQIEADGPQWIDIMAALAAGHAVKPRALNHPRLFIF 643

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+      + L       +  +      I   +  + G+     +     +     
Sbjct: 644 GTLEARLQSVDTLILGGLNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFE-- 701

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                              M   +  LI  +     +      R    ++       E  
Sbjct: 702 -------------------MANGTRHLIYSRALRQGSTPTVASRWLQRLLALGGEAFEAA 742

Query: 696 KKIKLTNSIN-KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            + +    +         E        +P        +     ++ +    P        
Sbjct: 743 LRGRGNRYLQWAGLIDRGEAQAPAQRPSPKPPLALQPKSYSFSEVGRLRRDPYAIYARRI 802

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---FTLPEHKRKNFITSYC-- 809
             L+P                D     RG + H ++        +           +   
Sbjct: 803 LRLDPVDA----------FNRDPGAAERGTLYHTIIDRFIREAHVAGTPEAAAAMEWILT 852

Query: 810 -----TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                 K      A             LE           + +EV   G +     +I +
Sbjct: 853 ELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVR--GGVELEAINIRL 910

Query: 865 SGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
           +G  D+I I+      I +YKT ++              Q
Sbjct: 911 NGVADRIDITGPGAADIIDYKTGYNP--SPAQARALLDPQ 948


>gi|325690486|gb|EGD32489.1| exonuclease RexB [Streptococcus sanguinis SK115]
          Length = 1093

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 70/709 (9%), Positives = 198/709 (27%), Gaps = 102/709 (14%)

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD-SLPQESSAS 343
           + L+ED      + S    +    ++ + + S++D      + S T      +    +  
Sbjct: 245 RKLAEDYQVKPDYISHAGAEDAFGRISKVLESRYDFSEQAVEVSETDRSQLQIWATMNQK 304

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                +A +I   +             ++ KDI +L+    D        + + + Y+I 
Sbjct: 305 EELEYVAKSIRQRVHDG----------VRYKDIRLLL---GDVEAYQLQLKTIFDQYQIP 351

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHE 462
                   +  H  ++ + +L R           + +LK+ L+   +++++         
Sbjct: 352 YYLGRSESMAQHPLVQFVESLERLKRYNFQLEDLLNLLKTELYGDLAQEELDHFEQYLRF 411

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            +              S+ +  +  ++ +           F +          +F     
Sbjct: 412 ADIKGAGKLAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTTSGLLAKFTEFVQ 471

Query: 523 NEV-IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH---------------- 565
                D L   L    + EQ  +  + +  S + +    +                    
Sbjct: 472 AARLSDNLTALLQGESQQEQERHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALILSGML 531

Query: 566 -------SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH----------KHIKKMHI 608
                   A  + V++ +    + L +P V+ +    + F            +    ++ 
Sbjct: 532 LSNYRTVPATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRAWLND 591

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH- 667
                 +  I       K+R   +S +    K+        +  V  + ++  L +    
Sbjct: 592 ATDSQAELQIVSSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYLLELTAAP 651

Query: 668 ------SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
                          +  ++  ++       +     + T        +A          
Sbjct: 652 LSLPIIVKKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAA 711

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------L 770
             +   +  K+L  E    + L +    +  +P  L+ S ++   +              
Sbjct: 712 EGISIPQISKELKTESLQLETLQALYPQE--QPLRLSASALNEYFRHQYAYFLKYVLRLQ 769

Query: 771 ESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCT-----KNAKLWPAKEYKN 823
           E         + G+ +H++ + +          +    +        +   ++       
Sbjct: 770 EEWTIHPDARSHGIFLHRIFEKVLQDDSSADFDRRLAQAMEETSREAEFESIYSESGQTR 829

Query: 824 LLLSIT--------RLLENPMMTTAMSCDSY---SEVSVSGKINCPKKD-IIISGRIDQI 871
               +         R+L +P     +  ++    +       +       + +SG++D+I
Sbjct: 830 FARQLLLDTARATGRVLAHPTGIETIGEETGFGSASKPF---LTLENGRAVTVSGKVDRI 886

Query: 872 SISQQNIF------IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                 +       + +YK+        E       +QL  Y   +++ 
Sbjct: 887 ----DRLTKIESLGVVDYKSGDIKF-SFEKFFNGLNSQLPTYLAAIEEL 930


>gi|84503243|ref|ZP_01001328.1| hypothetical protein OB2597_16812 [Oceanicola batsensis HTCC2597]
 gi|84388484|gb|EAQ01433.1| hypothetical protein OB2597_16812 [Oceanicola batsensis HTCC2597]
          Length = 574

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 73/208 (35%), Gaps = 28/208 (13%)

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +    +LK + +   IR  + +   HIL+DE QD   +   ++ SL            + 
Sbjct: 185 LWALKVLKTQPL---IRRALARRYPHILVDEAQDIGNLHQSILMSL----------QDAG 231

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             +  +GD  Q IY F GA             ++  +  +      L  +FRS   I+ +
Sbjct: 232 TQVSLIGDVNQGIYEFSGATGA--------FIQQHADRDEVDER-RLETNFRSVPSIVAI 282

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG------TVQLWEQVVSQHDSQCNPQQE 327
            +++    + A   +  + +   + + +  +           L +  +   D+    +  
Sbjct: 283 ANELSGRTDTAARTAPATLSGAYYFAYKKEEKDNAIKSFAALLGQAGIGVDDAAVLCRSA 342

Query: 328 SWTSYFDSLPQESSASILARRIAYTISN 355
            W + +    +E    +L   +   I  
Sbjct: 343 EWAADWAGGEKEQGQGVLRHFVNAAIQR 370


>gi|120609346|ref|YP_969024.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
 gi|120587810|gb|ABM31250.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1]
          Length = 665

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 76/673 (11%), Positives = 155/673 (23%), Gaps = 103/673 (15%)

Query: 1   LKNRFG--LSLNESYELI--YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA 56
           L++R G  +  +     I   + L              ++  +E         A  LQ+ 
Sbjct: 74  LRDRLGRYMPADAREVRIMTVEQLCAGLLKAQGLPVNALTEPLERQLLIRQAHAALLQEL 133

Query: 57  SQTQCIEER----FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
                 E        L    F   +   ++ ++ ++I ++        +    ++     
Sbjct: 134 RHEAPPEAAGFLARELDVQAFTGFEALAKQRLLHRDIAREGTHAAAYCRDHALDYGLYLL 193

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
                ++ +            +  YE A ++   LDF D                     
Sbjct: 194 LGRYERLRRGPDDEPQFYAPGDCTYEIA-RQLGELDFGD-----------------PYPW 235

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           ++   + +L DE+QD       V+R L                    GD  Q I      
Sbjct: 236 LEGRYDAVLFDELQDLDEAAMLVLRHLVA---------GGNGVFVGAGDFNQHI------ 280

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P          Q+      +   ++ L  ++R    I   ++ +F +           T
Sbjct: 281 LPGAFSVFGNGLQRIRQELPEPPEVLTLNTTYRFGKAICEGLNPLFGVEFETH--YPTKT 338

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                 +    +    QL         +       +          E S  +  R     
Sbjct: 339 ARFERLAYDSDEDCARQLLAIHQRVQGAPPPANGAAPCLTVVLRSPEDSVLLEWRFAHEG 398

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           +         F       +       L        L   +     +     V    R   
Sbjct: 399 VHYACKGLKRFYQRPAIALVLALFRALPGCGDQVRLTQGILSSALDGLMRYVRRGSRPD- 457

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
              +    L  L         ++    +    +        F +         V     +
Sbjct: 458 -ADVLANGLFDLQALAQHSTAEVDTRAVAAELVHQPDRMRDFLLRASFDPNAPVASAACE 516

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                  +       + +                +L               + +D L   
Sbjct: 517 AWLALPPEVCADAGRLCD--------------HPLLHRFFAEAPISPHEHRQCLDSLRAL 562

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLV 591
                        S+ E + +L     +  R H       ++++TV   KG E   V + 
Sbjct: 563 SRICR------GLSVDEFLGQLALMVESGIRQHRQNEAPSLQLLTVERCKGHEYEYVAVP 616

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                 F                                      +   +        +L
Sbjct: 617 LVERGRFP-------------------------------------RAAARHEAYRERNML 639

Query: 652 YVGMTRASDQLII 664
           YV +TRAS  L +
Sbjct: 640 YVALTRASRHLWL 652


>gi|314990973|gb|EFT35064.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3]
          Length = 751

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 111/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 663

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +V+   R      + +  F  +   I +   D     D 
Sbjct: 664 APVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|167751207|ref|ZP_02423334.1| hypothetical protein EUBSIR_02193 [Eubacterium siraeum DSM 15702]
 gi|167655714|gb|EDR99843.1| hypothetical protein EUBSIR_02193 [Eubacterium siraeum DSM 15702]
          Length = 1132

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 83/778 (10%), Positives = 199/778 (25%), Gaps = 140/778 (17%)

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI-IELPLSFRSTADILTVVDKVF 278
            DE  +IY             ++   +   + G  F + +    +    A++    D+  
Sbjct: 192 FDENTTIYIDG---FDSFSGAQQNFLRALADKGVNFVVALCTDEN---KAEVFATCDRT- 244

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                     +   T +  ++ R        L + + +              +Y  S+  
Sbjct: 245 ERLFERGNREDIKYTRLCGKAPRYKNGNLKALRDFLQTGVKDSKADSDGITMAYSSSVSG 304

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
           E      A  +   I  ++ ++           +  DI V+                   
Sbjct: 305 E------ADFVCANIRKLVRSE---------GYRYSDIAVICAS---PAKYKDAVNSAAA 346

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS--------- 449
            Y + V  +    +++   ++   AL +   +     + +  ++S               
Sbjct: 347 RYDVPVFADLPVPISEKPMLRFFEALLKAADNPT-GTNILRYIRSGFVRLPSEKNNGKTV 405

Query: 450 ----EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
               ++          E    ++  +K  +  +    +  +   E I IA      +F  
Sbjct: 406 PMTLKERHLVEQHLMEEYAECWDLKRKKWDKPMPHITNASEQRVEEIRIATVTPLVEFAK 465

Query: 506 LILGAKKGRQ-------------------------------QFISRFGNEV---IDVLDE 531
            +     GR+                               +++     E       + E
Sbjct: 466 SV-RGIGGRELVKKFTAFLFDKVDISAAIQGKCQDNSTRQLRYVKELTEEYNQLWRTVSE 524

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFL 590
            L        ++  +L E  + +      I  + + N  + V        +  E   VF+
Sbjct: 525 MLTSLYETLDDTPLTLAEFSALIHSCASRISISRTPNVLDSVLFGDPARTRSREVKAVFV 584

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +      F   + +   +  S +        I          S ++   K  T       
Sbjct: 585 MGAADGAFPDIYPEGNSVFTSDDVQRLAENDIELENDEARYSSAVLDAYKAMTLAGEK-- 642

Query: 651 LYVGMTRASDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           L++  T   +     I   +     +  N      +           + +  +  +   +
Sbjct: 643 LFITFTGEKENASEYIADIAKRFGAELINVDNLDALYMTESVKSAEKQYVINSAQLTDGQ 702

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPSTIDTKGK 767
             A E      E  P   +     + +          S I   +     L+P+ I+    
Sbjct: 703 KKAVEAVLSENEKEPSSIDRIKAVMSNNSGNSDIHRISDIAPIVFPQTALSPTAIEKLNG 762

Query: 768 TNLE------SLLSDNQTFN-----RGLIIHKLL----QVI---------FTLPEHKRKN 803
                       LS +          G I+H ++    + +           + + + K+
Sbjct: 763 CKFAYFLRYGMNLSSSAGIAMNASNYGNIMHYIMKYCFENMYDGARENGNPHVSDGRIKD 822

Query: 804 FITSYCTKNAK--LWPAKEYKNLLLSITRLLENPMM------TTAMSCDSYSEVSVSGKI 855
            I     +  +  L   +       ++   L              +    +       K+
Sbjct: 823 LIEQALAEYREKYLLTEENMSARFNTLYNALSVTAFYLIKYMAQELEKSRFVPSYFELKL 882

Query: 856 NCPKKD---------------------IIISGRIDQISI------SQQNIFIFEYKTH 886
              K +                     I + G +D++ I      S   I + +YKT 
Sbjct: 883 ESGKSENGFDISPYSFDIELADKSRQTITVGGTVDRVDIAYDDDKSGGQIRVIDYKTG 940


>gi|328752469|gb|EGF66085.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1]
          Length = 751

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 111/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 663

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +V+   R      + +  F  +   I +   D     D 
Sbjct: 664 APVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|228951512|ref|ZP_04113618.1| UvrD/REP helicase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228808219|gb|EEM54732.1| UvrD/REP helicase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 778

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 95/267 (35%), Gaps = 46/267 (17%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKETRVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +   + +   +R    T +    T     L     A +   KK       +D+   T ++
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTD--ASWVTEKKPKEW---DDICSLTVNM 509

Query: 160 LKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L        
Sbjct: 510 LDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF------- 562

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   +  +GD  Q+I++ H +E         +     TN       I L  S+RST
Sbjct: 563 ----PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------INLTRSYRST 611

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTT 294
             I+     +    +N      D    
Sbjct: 612 KPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|167910326|ref|ZP_02497417.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           112]
          Length = 272

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 83/245 (33%), Gaps = 5/245 (2%)

Query: 528 VLDEFLNFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            L E        +     +L+ L +  LE      +    ++ N V+I+TVH +KGLE  
Sbjct: 6   HLAELTQARASAQPGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYA 65

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           +VF                +      +D+ G  +        +       +   +    E
Sbjct: 66  IVFCPFLNDGGLREPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAE 123

Query: 647 YNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             RL+YV +TRA  +  +    + ++ + K++ +     +V  +  + +   K    ++ 
Sbjct: 124 RARLVYVALTRAVYRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAE 183

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
             + W A           P+           + +  +      +   +   I + S++ +
Sbjct: 184 LAERWQALAGGPVTLGALPVPAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLAS 243

Query: 765 KGKTN 769
               +
Sbjct: 244 AIARD 248


>gi|310817178|ref|YP_003965142.1| exonuclease-like protein [Ketogulonicigenium vulgare Y25]
 gi|308755913|gb|ADO43842.1| exonuclease-like protein [Ketogulonicigenium vulgare Y25]
          Length = 972

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/576 (10%), Positives = 149/576 (25%), Gaps = 42/576 (7%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  S  + A+ IA  +   +      +      +  + +   +      P  +       
Sbjct: 322 EAPSPRLEAQTIALRLRAALDEGRTAALITPDRMLTRQVAAALDLWSVKPDDSAGQPLPL 381

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--FNFSEDDIFK 455
           +     +    R      L  + L++L +  L+  D      +L S        +  +  
Sbjct: 382 SPPGRLLRQVARL-FGQRLDAESLLSLLKHPLTHADANRGQHLLNSHDLERYIRDRGMPF 440

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                       E              H    +  +                    +G  
Sbjct: 441 PTATALLKWAGQENAPDHRRAWAEWVIHFTNDLDRISTRPLSAHLAHLIDTAEEISRGPA 500

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
            +    G +   V+ +         +        ++  + +            H  + I 
Sbjct: 501 LWEEAAGRKARAVIADLQLNAPHGGEMEPRDFTAILDGVLRGAEVRNPD--TGHPNLLIW 558

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+   + +V L      ++         +  +L    G+ +   +     +     
Sbjct: 559 GTLEARVQGADLVILAGLNEGIWPGASAADPWLNRALRARAGLLLPERRIGLAAHDYQQA 618

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           I                     A+ ++ + +   +S+ +    R    +        ++ 
Sbjct: 619 I---------------------AAPEVWLSRAIRSSDAETVAARWVNRLTNLLEGLPDQN 657

Query: 696 KKIKLTN-SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               L       D W+A   +   P+           +     +  K   + I+  + +P
Sbjct: 658 GPAALAAMRAKGDAWLARASAMSQPDTRLPAAARPAPRPPLAARPTKLSVTGIETLLRDP 717

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
           Y +    +       L  L        RG +IHK+ +               +   + A 
Sbjct: 718 YAIYARHV--LRLNALGPLNQSADARMRGTVIHKVYEDFINSGTAPDAAHALALLDQFAI 775

Query: 815 LWPAKE------YKNLLLSITR----LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
               ++       +  L  I R     L+      A    +  E    G+I   + D  +
Sbjct: 776 AALDEDCPWPVTARQWLSQIRRAAPYFLQTEGERQAKGTPTLLEKR--GEIALGRHDFTL 833

Query: 865 SGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYT 899
            G+ D+I +       I++YKT      + +     
Sbjct: 834 VGKADRIDLQPDGQALIYDYKTGAPPSAKSQRYFDK 869


>gi|238750414|ref|ZP_04611915.1| UvrD/REP helicase [Yersinia rohdei ATCC 43380]
 gi|238711345|gb|EEQ03562.1| UvrD/REP helicase [Yersinia rohdei ATCC 43380]
          Length = 664

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 28/144 (19%)

Query: 137 YEEAKKKNCVLD------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
           Y+   +    +       F+++ +  N+LL K   +A     + +    + IDE QD S 
Sbjct: 188 YQAILEARRTVSEQGYFCFDEMFVWANELLDKNPEAAM---DLRRRFPLVFIDEAQDNSE 244

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
            Q  ++  +   F  G +     R     GD  Q+IYS  G             +  +T+
Sbjct: 245 EQSALLHRI---FCAGDSPSRRQR----FGDSNQAIYSRAG------------LEGASTD 285

Query: 251 AGQKFSIIELPLSFRSTADILTVV 274
                 +  LP S+R + +I   V
Sbjct: 286 PFPGTVVHVLPRSYRFSQEIADKV 309


>gi|206968092|ref|ZP_03229048.1| ATP-dependent DNA helicase replicase [Bacillus cereus AH1134]
 gi|206737012|gb|EDZ54159.1| ATP-dependent DNA helicase replicase [Bacillus cereus AH1134]
          Length = 778

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 95/267 (35%), Gaps = 46/267 (17%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKETRVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +   + +   +R    T +    T     L     A +   KK       +D+   T ++
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTD--ASWVTEKKPKEW---DDICSLTVNM 509

Query: 160 LKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L        
Sbjct: 510 LDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF------- 562

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   +  +GD  Q+I++ H +E         +     TN       I L  S+RST
Sbjct: 563 ----PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------INLTRSYRST 611

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTT 294
             I+     +    +N      D    
Sbjct: 612 KPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|265753492|ref|ZP_06088847.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235206|gb|EEZ20730.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 959

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/396 (13%), Positives = 111/396 (28%), Gaps = 68/396 (17%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++M V   + L+   + L+                I  +L    G+     +      
Sbjct: 519 GMQVMGVLETRNLDFRHLVLLSVNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHK------ 572

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I        +   + E   L+Y                NTS++  +       M+     
Sbjct: 573 IAVYAYYFYRLLQRAERITLIY----------------NTSSDGLNRGEWSRFMLQFLIE 616

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
               + +  L    +     +             +    ++ L D +  PK  FSP   +
Sbjct: 617 WPHPITRQFLEAGQSPQGTSSITVEKTP------DVMRQMQSLFDVRANPKAKFSPSALN 670

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFIT 806
                 L        G +  + + ++  +   G I H   +     + T  +   K  + 
Sbjct: 671 YYLDCPLKFYYRYVAGLSAPDEVSAEIDSATFGSIFHYAAEHIYKDLTTHGKVINKEALE 730

Query: 807 SYCTKNAKLWP--AKEYKNL--------------LLSITRLLENPMMTTAMSCDSY---- 846
           +      KL       +K L              +  I   +    +   +  D      
Sbjct: 731 TLLRNEVKLQDYVDTAFKKLFFNVPQNEKPEYNGVQLINSAVIARYLKQLLQNDLRYAPF 790

Query: 847 ----SEVSVSGKINCPKKDIIIS----GRIDQISISQQNIFIFEYKT----HHHVPQE-- 892
               SE+ V   I+      +I     G ID++      + I +YKT          E  
Sbjct: 791 TFIASEMEVDEPIDIQTPKGVIKSRIGGIIDRMDSKDGTLRIVDYKTGGDADTPPHVESL 850

Query: 893 --IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
              +     ++ Q  +Y  I+    P   +   L+Y
Sbjct: 851 FIPDKKRSNYVFQTFLYAAIMCRKQPTMKIAPALLY 886


>gi|212693030|ref|ZP_03301158.1| hypothetical protein BACDOR_02537 [Bacteroides dorei DSM 17855]
 gi|212664397|gb|EEB24969.1| hypothetical protein BACDOR_02537 [Bacteroides dorei DSM 17855]
          Length = 959

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 110/846 (13%), Positives = 223/846 (26%), Gaps = 131/846 (15%)

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D          K  V     +   Q++ +I+ D+       Q E IR   ++F + +
Sbjct: 105 DFDD--------ADKNRVDTDKLFSNLQDLRNIM-DDYTFIDDEQEEAIRQFFQNFSIER 155

Query: 208 NTHSSPRTLF---AVGDEKQSIY-SFHGA----EPKRVLREKRINQKRATNAGQKFSIIE 259
            T    R +     +G+    IY  F  +             R   +        +    
Sbjct: 156 RTALKERFISLWNVLGN----IYKGFRESLASQNIAYEGMMYRHVIEHLDVDKLPYEKYI 211

Query: 260 LPLSFRSTADILTVVDK-VFSIPENAQGL----SEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                    ++L  V+  +F+  ++A         D      +R +   + G        
Sbjct: 212 FV-----GFNVLNKVEHTLFTQLKDAGKAVFYWDYDEFYMKENRQAVTHEAGEFIRRNLR 266

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
                      +             S+ +  AR +   I N + T              K
Sbjct: 267 DFPSPLSGELFKNLSKPKEVHYIASSTENAQARYLPQWIRNNLTT------------PEK 314

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS---- 430
           +  V++        +            I       F L+       L+AL          
Sbjct: 315 ETAVVLCNEALLQPVLHSLPAEVKHVNI----TMGFPLSQTPVYSFLIALLELHTHGFNF 370

Query: 431 ---QEDDLSFVCMLKSPL-FNF-SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
              +    S V +LK P       + ++ +    R+                   F  + 
Sbjct: 371 KSGRYTFQSVVTLLKHPYTRQLTGQAELLEKELTRNNRFYPLPGELGKDEFLTQLFTPLS 430

Query: 486 KYIHELIHIAQFCSPHDFFTLI----LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
             ++  I +++                       Q       +    ++ F      +E 
Sbjct: 431 GNLNLCIRLSETLQQVASIYQANTSGTEDTDAFNQLYRESLFKAYTTINRFRTLIEEDEL 490

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
              S  +     L +   T            +++M V   + L+   + L+         
Sbjct: 491 TVQS--ETFRRLLVKVLSTTNIPFHGEPAIGMQVMGVLETRNLDFRHLVLLSVNEGQLPK 548

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                  I  +L    G+     +      I        +   + E   L+Y        
Sbjct: 549 SGGDSSFIPYNLRKAFGMTTIEHK------IAVYAYYFYRLLQRAERITLIY-------- 594

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                   NTS++  +       M+         + +  L    +     +         
Sbjct: 595 --------NTSSDGLNRGEWSRFMLQFLIEWPHPITRQFLEAGQSPQGTSSITVEKTP-- 644

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
               +    ++ L D +  PK  FSP   +      L        G +  + + ++  + 
Sbjct: 645 ----DVMRRMQSLFDVRANPKAKFSPSALNYYLDCPLKFYYRYVAGLSAPDEVSAEIDSA 700

Query: 781 NRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNL---------- 824
             G I H   +     + T  +   K  + +      KL       +K L          
Sbjct: 701 TFGSIFHYAAEHIYKDLTTHGKVINKEALETLLRNEVKLQDYVDTAFKKLFFNVPQNEKP 760

Query: 825 ----LLSITRLLENPMMTTAMSCDSY--------SEVSVSGKINCPKKDIIIS----GRI 868
               +  I   +    +   +  D          SE+ V   I+      +I     G I
Sbjct: 761 EYNGVQLINSAVIARYLKQLLQNDLRYAPFTFIASEMEVDEPIDIQTPKGVIKSRIGGII 820

Query: 869 DQISISQQNIFIFEYKT----HHHVPQE----IEHIPYTHIAQLSIYEKILKDSYPNKSL 920
           D++      + I +YKT          E     +     ++ Q  +Y  I+    P   +
Sbjct: 821 DRMDSKDGTLRIVDYKTGGDADTPPHVESLFIPDKKRSNYVFQTFLYAAIMCRKQPTMKI 880

Query: 921 VCLLIY 926
              L+Y
Sbjct: 881 APALLY 886


>gi|217958628|ref|YP_002337176.1| helicase, UvrD/Rep family [Bacillus cereus AH187]
 gi|229137838|ref|ZP_04266437.1| UvrD/REP helicase [Bacillus cereus BDRD-ST26]
 gi|217067883|gb|ACJ82133.1| helicase, UvrD/Rep family [Bacillus cereus AH187]
 gi|228645495|gb|EEL01728.1| UvrD/REP helicase [Bacillus cereus BDRD-ST26]
          Length = 777

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 103/280 (36%), Gaps = 52/280 (18%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKEAKVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKST---LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +   + +   +R    T +    T       T A ++    E+ K+      ++D+   T
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTDASWVTG--EKPKE------WDDICSLT 506

Query: 157 NDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L     
Sbjct: 507 VNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF---- 562

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +  +GD  Q+I++ H +E         +     TN       I L  S+
Sbjct: 563 -------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------INLTRSY 608

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
           RST  I+     +    +N      D       ++S   Q
Sbjct: 609 RSTKPIIEFTRALVPEGKNIHAFERDGEKPTVMKASSDSQ 648


>gi|86355695|ref|YP_467587.1| hypothetical protein RHE_CH00027 [Rhizobium etli CFN 42]
 gi|86279797|gb|ABC88860.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 1064

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/400 (11%), Positives = 91/400 (22%), Gaps = 48/400 (12%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               + +E  D L   L   +  + Q      Q +            +  + NH  + I 
Sbjct: 584 LADLWSHEAGDALASLLGEVIDTDGQIEADGPQWIDIMAALAAGHAVKPRALNHPRLFIF 643

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+      + L       +  +      I   +  + G+     +     +     
Sbjct: 644 GTLEARLQSVDTLILGGLNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFE-- 701

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                              M   +  LI  +     +      R    ++       E  
Sbjct: 702 -------------------MANGTRHLIYSRALRQGSTPTVASRWLQRLLALGGEAFEAA 742

Query: 696 KKIKLTNSIN-KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            + +    +         E        +P        +     ++ +    P        
Sbjct: 743 LRGRGNRYLQWAGLIDRGEAQAPAQRPSPKPPLALQPKSYSFSEVGRLRRDPYAIYARRI 802

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---FTLPEHKRKNFITSYC-- 809
             L+P                D     RG + H ++        +           +   
Sbjct: 803 LRLDPVDA----------FNRDPGAAERGTLYHTIIDRFIREAHVAGTPEAAAAMEWILT 852

Query: 810 -----TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                 K      A             LE           + +EV   G +     +I +
Sbjct: 853 ELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVR--GGVELEAINIRL 910

Query: 865 SGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
           +G  D+I I+      I +YKT ++              Q
Sbjct: 911 NGVADRIDITGPGAADIIDYKTGYNP--SPAQARALLDPQ 948


>gi|320007416|gb|ADW02266.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331]
          Length = 711

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/296 (11%), Positives = 76/296 (25%), Gaps = 41/296 (13%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI-----RDRFNTYKMFKSTLASLTLA 130
           +    +                + L +     +        +++   +      A  T A
Sbjct: 352 RSGEEEARWERAARATGFTGTAQFLAQEYKHVVLAQNLRTLEQYEACERRGRGSALPTSA 411

Query: 131 KYLN----AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L       + +    + +  +          L     +A +         H+++DE Q
Sbjct: 412 RALVWRTVEEFTDRLGADGLRTY----------LGTCAEAADLLKTSGPPYRHVVVDEAQ 461

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D    QW ++R+            + P  LF  GD  Q IY                   
Sbjct: 462 DLHPAQWSLLRA---------AAPARPDDLFIAGDPHQRIYDTK-------------VSL 499

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           R           ++  ++RST +IL+    +       Q   +    T+    S +   G
Sbjct: 500 RTVGVRVTGRSTKMRKNYRSTHEILSWSTALLVGRPFEQLADDARNETLLGYRSALHGSG 559

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                             +   W     +  +   ++   +     +  +      
Sbjct: 560 PETFGGDSEDAELDALVTRVRGWLDSGIAPGEIGVSARFNKTCDRAMERLRAAGLP 615



 Score = 42.2 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 30/109 (27%), Gaps = 26/109 (23%)

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             S     V+I T+H  KGLE   V ++                 +  L  D  +     
Sbjct: 622 DSSTGLESVQIGTMHAFKGLEFRCVAVIGVSDGALPFPKAVTAADVDRLQHDADLLA--- 678

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                     LL+V  TRA D L +    + S 
Sbjct: 679 -----------------------ERCLLFVACTRARDGLYVSWSGDPSE 704


>gi|229108607|ref|ZP_04238219.1| UvrD/REP helicase [Bacillus cereus Rock1-15]
 gi|228674862|gb|EEL30094.1| UvrD/REP helicase [Bacillus cereus Rock1-15]
          Length = 778

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 80/217 (36%), Gaps = 36/217 (16%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I HIL+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRLIKHILVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  S+RST  I+     +    +N      D       + +        +L E + ++
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGAKPTVTKVANHN-----ELHEHITAK 656

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
             +    +Q +  +       ES+A+  A      I 
Sbjct: 657 V-AALQTEQHNTIAIICKSATESAAAYEALNHIENIK 692


>gi|189218844|ref|YP_001939485.1| Inactivated superfamily I helicase and RecB family exonuclease
           [Methylacidiphilum infernorum V4]
 gi|189185702|gb|ACD82887.1| Inactivated superfamily I helicase and RecB family exonuclease
           [Methylacidiphilum infernorum V4]
          Length = 923

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/521 (10%), Positives = 141/521 (27%), Gaps = 65/521 (12%)

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL------ 445
           L         I  +        +       + L   +             +SPL      
Sbjct: 300 LLACKLRSSGIDFLNYSGISYKETPFYDFFLQLRELLQDPSWTKFSSWA-RSPLSYEWIG 358

Query: 446 ---FNFSEDDIFKIC--TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                 SE+ +  +     R    ++ ++ +            +  +I +L         
Sbjct: 359 KKQKGKSEEFLSFLDRVATRSIAPSLSDFFESSQQSSFEVLGLIRSFIEDLRTPQWPKRL 418

Query: 501 HDFFTLILGAKKGRQ-QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
            +F  ++L        + + ++ + +   +D F +    N  +  S    L+  L++   
Sbjct: 419 LNFLAVVLEESSSFAGEMVEQWADFIGKRIDRFCSLASVNAFHGCSPFLSLM--LDEMNE 476

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                 +    ++ +         +S  + L     +           +   +    G+ 
Sbjct: 477 ESFFFETEGDPKLELKGWLELLWDDSMHLVLAGFQERDVPKAIEPDFILTDEIRKKVGLK 536

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
               +    + +++ L+  L K       RL            ++        +K     
Sbjct: 537 TAERRMARDSLLLAFLVNRLSKGA-----RLDVFLSKFDQQGELLLPSRLLFRQKAERLA 591

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
              D ++ S  +    K       +                          ++ +    +
Sbjct: 592 RRVDFLFRSLPSKTIPKPKTSPFKLKLPSVGWKS-----------------EESLSVSAL 634

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ-------- 791
              L  P    +       P  +             +    + G ++H++L         
Sbjct: 635 NDYLSCPFYFYLKHRLGWQPVVL----------PQGELLEADFGKVLHEVLAVFGENFKG 684

Query: 792 -------VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
                  +IF+  E + +  +T    K+  L    + K +   +             S +
Sbjct: 685 VELEDPSLIFSFLEDQLEKVLTKSYGKDRTLGLQFQQKAMWARLKSF---ASFQAQWSRE 741

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
            +   +V  K     +++ + GRID+I    +   I +YKT
Sbjct: 742 GWRIWAVEKKFELEIENVKVRGRIDRIDKKDEQFLIIDYKT 782


>gi|297200048|ref|ZP_06917445.1| helicase [Streptomyces sviceus ATCC 29083]
 gi|197710521|gb|EDY54555.1| helicase [Streptomyces sviceus ATCC 29083]
          Length = 815

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 93/295 (31%), Gaps = 47/295 (15%)

Query: 3   NRFGLSLNESYELIYKDLWPL--------PYFQVSDINKYVSLSMETGNPTILKKAQTLQ 54
            R  L  +E  E I ++            P  +   ++   + S   G  T  + A  L+
Sbjct: 413 RRLELEADE-LERIRRNALGGTAPVNLLRPRARKLLLDALWARSGAGGRHTDPELAAELR 471

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            +       E        F+         +  + +     D +   + ++        R 
Sbjct: 472 SSFDEDITSE------DSFIEFLDAWWPELTPKTVLDAMADERRLGRWARRILNPGEIRR 525

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAK------KKNCVLDFEDLIINTNDLL----KKRD 164
               + +  L    +A  +    +         +K   LD  D +    +L+    + + 
Sbjct: 526 VARSLRRDGLTVHDIA--MLDELQAVLGAPARPRKRRELDPLDQLTGLEELMPVREESQR 583

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             A    +   E  H+++DE QD + +QW ++                  T   VGD  Q
Sbjct: 584 ERAERLAQERVEYAHVIVDEAQDLTPMQWRMV-----------GRRGRHATWTVVGDPAQ 632

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           S      ++P      +           +     EL +++R+ ++I  +  KV +
Sbjct: 633 S----SWSDPDEAAEARDE-----ALGSRPRRRFELTVNYRNPSEIAELAAKVLA 678


>gi|188588883|ref|YP_001921959.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188499164|gb|ACD52300.1| putative helicase [Clostridium botulinum E3 str. Alaska E43]
          Length = 761

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 76/234 (32%), Gaps = 30/234 (12%)

Query: 143 KNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           +N ++D +DL  ++   +LL+  D          ++  HI++DE QD S  Q  +I S  
Sbjct: 498 ENKIIDEDDLAPLLYIRNLLEGIDEK--------EKFKHIVVDEAQDYSPFQIHLINSF- 548

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                     S   +L  VGD  Q IY + G      L+      K       K + ++L
Sbjct: 549 ----------SKGNSLTLVGDLAQGIYYYKG------LKCWEDITKDL--FQDKATYVQL 590

Query: 261 PLSFRSTADILTVVDKVF-SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
             S+RST +I+        +     +            +  +  +               
Sbjct: 591 TQSYRSTVEIIDFAKHTLKAQNLGLKDAKAVLRHGEEPKIIKFDESEKNIYKIIDKIIEK 650

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
            +   +        DS   +    IL    AY    + G +  F      +   
Sbjct: 651 IRELGKISIAIITKDSKQAQKVEKILKNNSAYKFQRIKGKEACFLEDNVIIPSY 704


>gi|167815129|ref|ZP_02446809.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei 91]
          Length = 326

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 93/285 (32%), Gaps = 10/285 (3%)

Query: 493 HIAQFCSPHDFFTLIL-GAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSL 547
            +             L G  +  ++ ++    E      + L E        +     +L
Sbjct: 6   RLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQPGIAPTL 65

Query: 548 QELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           + L +  LE      +    ++ N V+I+TVH +KGLE  +VF                +
Sbjct: 66  RWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPAGSGL 125

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                 +D+ G  +        +       +   +    E  RL+YV +TRA  +  +  
Sbjct: 126 PDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVYVALTRAVYRCYLVA 183

Query: 667 --HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
             + ++ + K++ +     +V  +  + +   K    ++   + W A           P+
Sbjct: 184 GTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPVTLGALPV 243

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                      + +  +      +   +   I + S++ +    +
Sbjct: 244 PAHREPLAAGHDAQATRAARRATRGLRDAWRIASFSSLASAIARD 288


>gi|82701855|ref|YP_411421.1| hypothetical protein Nmul_A0722 [Nitrosospira multiformis ATCC
           25196]
 gi|82409920|gb|ABB74029.1| DNA helicase/exodeoxyribonuclease V, subunit B [Nitrosospira
           multiformis ATCC 25196]
          Length = 930

 Score = 70.3 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/665 (10%), Positives = 161/665 (24%), Gaps = 64/665 (9%)

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
                   G    +       +        V    +          P   + T +     
Sbjct: 184 IPQRLICYGFDSVTPQWAALLAKLEEAGCEVDEMTRTDPAAHRFEVPYSPNRTVHRVECD 243

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
             +     A   A      I  D+    G      ++    LVR                
Sbjct: 244 VSNDEIYQA---AVWARARIEKDSTARVGIVVPPLSEYRSSLVRIFSSVMDPDVRQALPG 300

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF-NFSEDDI--- 453
               +    +    L+ +  +     +   I  + +      +L+SP       + +   
Sbjct: 301 VPRHMPFNISLGVALSSYPLVHTAFLVLELIQGEIEFERASLLLRSPFLAGAETEMLPRA 360

Query: 454 ---FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS--------PHD 502
               K+  +     T+   +        +    ++K + +     +  S           
Sbjct: 361 RLDAKLRKRAEPVITLERLLVLVKRENNANCPLLVKLLWDCEKFCKKMSTDVQRPSTLAR 420

Query: 503 FFTLILGAKK--GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
             + IL      G +   S     +    D      L +      S ++ IS L      
Sbjct: 421 AISDILQLVGFPGERAPDSSEYQTLKKWQDVLAGLALLDNVTIGMSYRQAISHLRGVAAD 480

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                      ++I+ V  A G+    ++++    + +  +      +   L     +P+
Sbjct: 481 TLFQPETPDVPIQILGVFEAGGMMFDHLWVMGLSDEAWPLQPRPNPFLPIELQRAERLPL 540

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
             P +                            G   AS ++I+    ++ +        
Sbjct: 541 GSPAATLELASR------------------FTEGWLAASKEVILSHARHSGSSDTRELAP 582

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
              + + +  +      +                     E  P        +      + 
Sbjct: 583 SPLIAHIATSDIRLFGLLPDYVKHRDLIHQGRRLERIKDEPAPGIVSGKGGEGRARGGVA 642

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-------- 792
                                +       L++         RG ++H++L          
Sbjct: 643 VIKDQAACP-------FRALALHRLHAEGLKTPHPGLDAGERGTLVHEMLAQVWERIKNK 695

Query: 793 --IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-------LENPMMTTAMSC 843
             +  L E + +  +TS   +      A+    L   + R+       L    +      
Sbjct: 696 SALDALAEDELRTLLTSAAGEVIARMSARHSHTLSERLARVEQRRLVRLAREWLEEERKR 755

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
             ++ VS   + +     + +  R+D++   +     + +YKT                 
Sbjct: 756 GDFTVVSTEARKSIEIGGLALDTRLDRVDELADGRRIVIDYKT-RAPSVNAMLGERPDEP 814

Query: 903 QLSIY 907
           QL +Y
Sbjct: 815 QLPLY 819


>gi|163797152|ref|ZP_02191107.1| Inactivated superfamily I helicase [alpha proteobacterium BAL199]
 gi|159177668|gb|EDP62221.1| Inactivated superfamily I helicase [alpha proteobacterium BAL199]
          Length = 1005

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/628 (10%), Positives = 139/628 (22%), Gaps = 61/628 (9%)

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ--ESWTSYFDSLPQESSASILARR 348
           +T      +   G    ++  E    + ++        E   +   +    +    LARR
Sbjct: 325 ATRPSEPDAPATGAFDGIRRLEAPSPREEAGAIAMLMREVLETPGRTAALVTPDRSLARR 384

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A  +      D    +   R +        +R   D          L    K  +    
Sbjct: 385 VASELERW---DLTVDDSAGRPLAESAPAAFLRLIGDLAAEQAAPVPLLAALKHPLAAGG 441

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
           +        ++ L  L           + +      L +   +    +            
Sbjct: 442 QAPDAFRRMVRRLERLVLRGPRPAPGFTGLRRAVEVLEDKHAEARAGLLVWVDGLAGRLG 501

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV 528
            +    N        +                      +     G    ++R  +E+ D 
Sbjct: 502 PLLDTLNRPAVAATEMADAHARAAEALAQSDQQSGADRLWRGDAGEA--LARLFDEMRDA 559

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
           LD                              + R     H  + I+    A+      V
Sbjct: 560 LDAL---------EPVPGRAWPGLFEALLESRVVRPRWGAHPRLHILGALEARLQRFDRV 610

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            L       +         +   +  D G+P    +     +                  
Sbjct: 611 ILGGLNEGTWPADPAPDPWMSRPMRRDFGLPAPERRIGLAAHD----------------- 653

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH-NDERVKKIKLTNSINKD 707
               V M   + ++++ + +          R    +   +     E   +          
Sbjct: 654 ----VSMAFGAPEVVLTRATRVEGTPTVPSRWLLRLETVARALGAEAEFRSDPAPVAWHG 709

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
           +              P        + +   +I   L  P     +               
Sbjct: 710 QLDRPASVEPGKAPLPCPPVHVRPRTLSVTRIDTWLRDPYSIYASRILD----------L 759

Query: 768 TNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHKRKNFITSYCT---------KNAKLWP 817
             L+ L SD     RG  IH  L   +   P     + +               +     
Sbjct: 760 RALDDLDSDPNAAERGNAIHNALDAFVAAYPRDLPPDPLQRLLEYGQASFADHLDRPGVW 819

Query: 818 AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQ 876
           A  +          +E           + +E      +  P  D  ++G  D+I      
Sbjct: 820 AFWWPRFERVAAWFVEVERDRRRGLSATVTEQKGRLAVPGPAGDFTLTGIADRIDRMGDG 879

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
              I +YKT  +  +    +      QL
Sbjct: 880 TYAIVDYKTGGYPSKN--DLKNGAAPQL 905


>gi|290580137|ref|YP_003484529.1| putative exonuclease [Streptococcus mutans NN2025]
 gi|254997036|dbj|BAH87637.1| putative exonuclease [Streptococcus mutans NN2025]
          Length = 1080

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 74/642 (11%), Positives = 169/642 (26%), Gaps = 95/642 (14%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  +A +I   +              + KDILVL+    D          + + Y+
Sbjct: 304 QKEEVEHVAKSIRRKLYEGH----------RYKDILVLL---GDVDAYKLQIGKIFDKYE 350

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQ- 459
           I         ++ H  +  + +L R           + +LKS L+    ++ + K+    
Sbjct: 351 IPYYFGKAESMSSHPLVHFVDSLERVKRYNFRAEDVMNLLKSGLYGKIRQNQLDKLEQYV 410

Query: 460 -----------------RHETETVYEYIQKFANCGISKFQHVIKYIHE-----LIHIAQF 497
                             +  +   + + K     +S  Q ++K   +     L  +  F
Sbjct: 411 IYADIKGKTKFFKDFTLDNHGQFDLKALNKLRAEVMSPLQELVKIQAQKGDSILQKLTNF 470

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                         +G          +V       L             L + ++ L   
Sbjct: 471 LEAISLTNNFSKLIQGVSDTEQEKNEQVWKTFTVILEQFHTIFGQEKMKLADFLALLRSG 530

Query: 558 PPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V + +    +   +  VF +      F      K  I        
Sbjct: 531 MLAADYRTVPASVDVVTVKSYDLVEPHSNKFVFALGMTQSHFPKIVQNKSLISDEERAKI 590

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                  +          + K   K        L          +L++      +  + +
Sbjct: 591 NEATPNNRR------FDIVTKENLKKNHFTALSLFNAAT----QELVLTLPQILNEAEDN 640

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                 ++        E+ +     +  +   + A          + +++E + ++    
Sbjct: 641 TSSYLLELQDMGVPVVEKGRNRLAADPEDIGNYKALLSRVIELNRSAIDQELSKEEQTFW 700

Query: 737 QKIPKKLFS--------------------------PIKNDINEPYILNPSTIDTKGKTNL 770
               + L                              +  I++P  L+ S + T      
Sbjct: 701 SVAVRYLRQKLAKEGLTIPEVNDKMQTKQVAAEVMAARFPIDQPLNLSSSALTTFYNNQY 760

Query: 771 ESLLS-----------DNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKN 812
              L                 N G  +H++ +++           +  R   IT++    
Sbjct: 761 LYFLQYVLGLQELETIHPDARNHGTYLHRVFELVMQDQSTDDFDSKLNRAIDITNHEDSF 820

Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRIDQI 871
             ++   E     L I   +     T     +   +E           + + I G ID+I
Sbjct: 821 HLVYNEDEESRYALGILEDIARSTATILKGDNPVQAESEEEAFELMLDQAVKIRGVIDRI 880

Query: 872 SI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
              S  ++ I +YK+  +   +++        QL  Y + L+
Sbjct: 881 DRLSDGSLGIVDYKSSKNTF-DLQKFYNGLSPQLVTYIEALR 921


>gi|215428676|ref|ZP_03426595.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T92]
          Length = 353

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/401 (11%), Positives = 93/401 (23%), Gaps = 81/401 (20%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFK 121
                    +   T     +  + T        +L+  L +  +  +   +     +   
Sbjct: 21  WPGDAEDGPAATTTWPAHLRPALTTAGFAT---ELRNLLARCAERGLDPLELQQLGRCRG 77

Query: 122 STLASLTLAKYLNAHYEEAKKKNCV------------LDFEDLIINTNDLLKKRDVSAWI 169
                   A      YE+                   L   +L+    +      V   +
Sbjct: 78  RPE--WIAAGQFAQRYEQVMLLRGAVGLAAPQATAPALSAAELVGAALEAFA---VDPEL 132

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                  +  +L+D+ Q        ++R L     +              GD  Q+++ F
Sbjct: 133 LAAERARVRTLLVDDAQQLDPQAARLVRMLAAGTELA----------LIAGDPNQAVFGF 182

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            G EP  +L             G     + L +S R    +   V  +            
Sbjct: 183 RGGEPTGLLA-----DDPPPAGGAPIPSVTLTVSHRCAPAVARAVTGIARRLPGRSVGRR 237

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
              T     S  +   G+                                      A   
Sbjct: 238 IEGTGTEVGSVTVRLAGS--------------------------------------AHAE 259

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  I++ +    +        +    + V+VR       +               VG   
Sbjct: 260 AAMIADALRRAHLID-----GVPWSQMAVIVRSVPRAVRLPRALAAAGVPVAPPAVGG-- 312

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
             L+   A++ L+ +        D    + +L  P+     
Sbjct: 313 -PLSAEPAVRALLTVLEATADGLDGDQALLLLTGPIGGVDP 352


>gi|327334155|gb|EGE75869.1| UvrD/Rep helicase [Propionibacterium acnes HL097PA1]
          Length = 700

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/391 (13%), Positives = 113/391 (28%), Gaps = 47/391 (12%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   S  +      + + A+ +  A +T         L    L   
Sbjct: 340 ASAPGQPGVYVIGIDALASAVVREAGTDVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 399

Query: 78  FT--PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +  P++    + +  +   +   L ++     +        + F+       +   L  
Sbjct: 400 GSEIPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDVVWALVK 457

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  +    + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 458 KYRDDSRIGGTISFPEAAAIAAQYLTRHTPLA----------DHVLVDEGQDLTPAHWRL 507

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 508 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLTLSRY-------------GIKTRG 545

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
              +L L++R+TA IL    +V           +D    + +RS+R G          VV
Sbjct: 546 RSRQLTLNYRTTAQILRWSTQVLEGGFYVDLDGDDDDRLLGYRSARRG--------PDVV 597

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           +   +    + +          ++      A  +   ++    +       + R      
Sbjct: 598 AHPCATITEEFDYLAEIVGQWAKDRQPEATAVLVRDKVAARASSG---CASRARSTNPSR 654

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
              L   R  +       +  +    + + G
Sbjct: 655 RSWLDTARGASGYDHAPRQGHRVQQSVPLRG 685


>gi|187932513|ref|YP_001887038.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium botulinum
           B str. Eklund 17B]
 gi|187720666|gb|ACD21887.1| putative helicase [Clostridium botulinum B str. Eklund 17B]
          Length = 761

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 29/134 (21%)

Query: 143 KNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           +N ++D +DL  ++   +LL+  +          ++  HI++DE QD S  Q  +I S  
Sbjct: 498 ENKIIDEDDLAPLLYIRNLLEGIEEK--------EKFKHIVVDEAQDYSPFQIHLINSF- 548

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                     S   +L  VGD  Q IY + G      L+      K       K + ++L
Sbjct: 549 ----------SKGNSLTLVGDLAQGIYYYKG------LKCWEDITKDL--FKDKATYVQL 590

Query: 261 PLSFRSTADILTVV 274
             S+RST +I+   
Sbjct: 591 TQSYRSTVEIIDFA 604


>gi|94970648|ref|YP_592696.1| DNA helicase/exodeoxyribonuclease V, subunit B [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552698|gb|ABF42622.1| DNA helicase/exodeoxyribonuclease V, subunit B [Candidatus
           Koribacter versatilis Ellin345]
          Length = 906

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 149/544 (27%), Gaps = 54/544 (9%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-------FKI 456
              +    L++H  ++  + + R   S  +   F  +L+S       ++        F++
Sbjct: 286 FEISLGRPLSEHPMVRAALRILRLATSSLNAEEFSALLRSRYIAGGTNEASARALVDFEL 345

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI------AQFCSPHDFFTLILGA 510
             +   T T+ + +   A   +     + K +                        IL  
Sbjct: 346 RRKLRATVTLAQVLSGKAEEKVVGAPKMAKMLRAFFAKPAKTGKLTHTEWAAEAQRILRI 405

Query: 511 KKGR----QQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAH 565
                   +  ++    +V    +E L      +Q     +  E++ ELE+       A 
Sbjct: 406 MGWPGDEGEFSLNSEEFQVSKKWEELLKDFCALDQALPLKTASEMLRELERAAAEATFAA 465

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                 V+I+    A G     ++      + +  K      I  +L    G P    + 
Sbjct: 466 ENEAAPVQIVGPLAASGETFDALWFCGLSDETWPQKGHPNPFIPFALQKSAGAPNTSAEW 525

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             R+                            ++++ ++       + +         + 
Sbjct: 526 NLRDGERRTARLLQ------------------SANECVLSWPQRNDDGELRPSPLLAGVP 567

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
             +      V+           E    E +          R  T+ Q            +
Sbjct: 568 PATDLEIADVRDWNSLQKGALLERYDDEKAPAIANEELKRRGTTVLQWQSGCPFRAFAQT 627

Query: 746 PIKNDINEPYILNPSTID----TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
            +  +  E   L  + I+                   +   G I    L+ +  +     
Sbjct: 628 RLAAEKLEESPLGANAIERGNIVDTALRFVWEELRESSNLNGGIPTMTLEFV--IAGAIE 685

Query: 802 KNFITSYCTKNAKLW---PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
           +  +  + +            E + L   +   L+             S+V+V+ K+   
Sbjct: 686 RALLEEFPSGEESWLVRHREIERERLSKLVHDWLDVERKRHPF-HSVRSQVNVTVKL--- 741

Query: 859 KKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIE-HIPYTHIAQLSIYEKILKDSYP 916
             ++ + GRID++  +      + +YKT           +P     QL IY   +     
Sbjct: 742 -GELELKGRIDRLDQTVDGEYVVIDYKTTRKDLATSLWEMPRPQEPQLPIY--AVGQQLE 798

Query: 917 NKSL 920
           +  +
Sbjct: 799 SHEV 802


>gi|89893464|ref|YP_516951.1| hypothetical protein DSY0718 [Desulfitobacterium hafniense Y51]
 gi|89332912|dbj|BAE82507.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1631

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD    ++ +I++L E        H+    + AVGD+ Q+IY F GA  + ++ 
Sbjct: 1202 LVIDEAQDMDAHEYALIQALME--------HNEEMRVIAVGDDDQNIYEFRGASSEYMVN 1253

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
                         ++ ++ EL  ++RS ++++   ++  +     
Sbjct: 1254 LI---------LEKQATLYELVENYRSKSNLVQFSNQFAARIPLR 1289


>gi|251777891|ref|ZP_04820811.1| putative helicase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082206|gb|EES48096.1| putative helicase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 761

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 76/234 (32%), Gaps = 30/234 (12%)

Query: 143 KNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           +N ++D +DL  ++   +LL+  D          ++  HI++DE QD S  Q  +I S  
Sbjct: 498 ENKIIDEDDLAPLLYIRNLLEGIDEK--------EKFKHIVVDEAQDYSPFQIHLINSF- 548

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                     S   +L  VGD  Q IY + G      L+      K       K + ++L
Sbjct: 549 ----------SKGNSLTLVGDLAQGIYYYKG------LKCWEDITKDL--FQDKATYVQL 590

Query: 261 PLSFRSTADILTVVDKVF-SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
             S+RST +I+        +     +            +  +  +               
Sbjct: 591 TQSYRSTVEIIDFAKHTLKAQNLGLKDAKAVLRHGEEPKIIKFDESEKNIYKIIDKIIEK 650

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
            +   +        DS   +    IL    AY    + G +  F      +   
Sbjct: 651 IRELGKISIAIITKDSKQAQKVEKILKNNSAYKFQRIKGKEACFLEDNVIIPSY 704


>gi|189459925|ref|ZP_03008710.1| hypothetical protein BACCOP_00558 [Bacteroides coprocola DSM 17136]
 gi|189433359|gb|EDV02344.1| hypothetical protein BACCOP_00558 [Bacteroides coprocola DSM 17136]
          Length = 1606

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 65/190 (34%), Gaps = 17/190 (8%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD    +  ++R+L          H+    + AVGD+ Q+IY F G++   + R
Sbjct: 1180 LVIDEAQDMGAEEHALVRALM--------HHNEEMRVIAVGDDDQNIYEFRGSDAGYMFR 1231

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              +    R          +E+  ++RS   ++   ++               +       
Sbjct: 1232 LTQEPGSRF---------VEMTENYRSARHVVAFANEFVKTIGRRMKTMPIISMRKEEGW 1282

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
              +    +  +++ +V +             +  +       A +  R I   +   +  
Sbjct: 1283 VGVTHHRSACMYQPLVEELLQHRGEGTTCVLTQTNEEAVIVVALLQKRGIRSKLIQSMEG 1342

Query: 360  DTIFSNGKKR 369
               ++  + R
Sbjct: 1343 LLFWNMAEMR 1352


>gi|229078349|ref|ZP_04210913.1| UvrD/REP helicase [Bacillus cereus Rock4-2]
 gi|228705024|gb|EEL57446.1| UvrD/REP helicase [Bacillus cereus Rock4-2]
          Length = 778

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 95/267 (35%), Gaps = 46/267 (17%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKETRVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +   + +   +R    T +    T     L     A +   KK       +D+   T ++
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTD--ASWVTEKKPKEW---DDICSLTVNM 509

Query: 160 LKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L        
Sbjct: 510 LDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF------- 562

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   +  +GD  Q+I++ H +E         +     TN       I L  S+RST
Sbjct: 563 ----PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------INLTRSYRST 611

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTT 294
             I+     +    +N      D    
Sbjct: 612 KPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|189501876|ref|YP_001957593.1| hypothetical protein Aasi_0454 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189501882|ref|YP_001957599.1| hypothetical protein Aasi_0460 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497317|gb|ACE05864.1| hypothetical protein Aasi_0454 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497323|gb|ACE05870.1| hypothetical protein Aasi_0460 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 969

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/615 (10%), Positives = 159/615 (25%), Gaps = 101/615 (16%)

Query: 338 QESSASILARRIAYTISNMIGT-DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           + ++A+     ++  +  +I      F   +  ++ A + L L         +    + +
Sbjct: 294 EANTAAEQVELVSSQLQQLINQEGNSFQPHQAVIVLANEDLFLP----MLHALPTNLQSV 349

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                  +     + L + +    +                  ++           I   
Sbjct: 350 NTTLGYPITYTASYQLIEQILALQITTQQPTC--PAGYFPTQAIIAL----LKHTPIKYC 403

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                            +           +    +   A   S  D    ++      + 
Sbjct: 404 NQALASETIQLLTNHYTSYTSQKILSEASELYQAIFRPA--SSTIDIAQYVIDVMTLVKA 461

Query: 517 FISRFGNEV----IDVLDEFLNFTLRNEQNSYS----SLQELISELEQ--YPPTIKRAHS 566
            +    +       + L E +      +         S++  I    Q      +     
Sbjct: 462 QLEAQEDSSLALEEEALGELIKQLSYIQVIITPLYKVSIERFIQLFRQLIRSLQLTFKEK 521

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
            +   ++I+ +     L+   VF+V            +   I  +L    G+P       
Sbjct: 522 TSAKGIQILRIWETANLDFKYVFIVGMNEGNLPASTAQGSFIPYNLRKGYGLPTMDIFQA 581

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQRTWYDM 684
           + +                      Y  + RA   + I     S+ +N K+ ++  W  +
Sbjct: 582 TLDAYY------------------FYRLLQRAQQ-VYITYNTPSSATNPKEVSRYLWQLL 622

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                  ++      +         I  +          + +    K+ +    +   L 
Sbjct: 623 YESKLPIEQHYINTAIYTPTICPIIIKKDDGVLLKLEEFVVKNGQEKRSLTPAALNTYLG 682

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
             ++                + +   + L+ D      G + HK+++ ++   +  RK  
Sbjct: 683 CSLRFYFRYI---------LQLQVPQQLLIEDTDAIRFGSLFHKVMEKLYAPLQIARKG- 732

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSI--TRLLENPMMTTAMSCDSYSEVSVSGK-------- 854
             S   KN       + + ++  +    L  N ++      +   E  V  K        
Sbjct: 733 --SMVQKNDLEKLKSQLQAIIAEVFSNALYSNHILQW--GGEHLIEQEVMQKVVNKILEI 788

Query: 855 -----------------------INCPKKDII-ISGRIDQISISQQNIFIFEYKTHHHVP 890
                                         ++ +SG ID+I   Q +I + +YKT     
Sbjct: 789 DKKHTPFTLVGIEVGKQQSLMIHFRLTSDKVVALSGIIDRIDQKQDSIRVIDYKTGG--- 845

Query: 891 QEIEHIPYTHIAQLS 905
                    ++ Q+S
Sbjct: 846 ------DEKYVEQIS 854


>gi|188585438|ref|YP_001916983.1| LexA repressor [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350125|gb|ACB84395.1| LexA repressor [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 815

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 121/387 (31%), Gaps = 44/387 (11%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y+E   K    DF+++      +LK  +       K      HIL+DE QD S +Q E+I
Sbjct: 204 YDELMDKEGYTDFKNM---ALQVLKGIEEGVITCDK----FTHILVDESQDLSRVQLEII 256

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY--SFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ ++         +  ++  + D  QSIY  S+            +  +    +   +
Sbjct: 257 KNMFKN-------DKNYSSVIFIADTAQSIYLQSWLS---------HQSFKSIGFDMSGR 300

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                L  ++R+TA+I      +    +    +  +          R G+    + ++  
Sbjct: 301 ART--LSKNYRTTAEIAEAAYSLIEDDQT---IVNNENYVEPAIIDRRGEHPVYKQFDSD 355

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
             + D  C+  + +   ++D       A    R++      ++          KR     
Sbjct: 356 GEELDYVCDMIKNNLYKHYDLKDIAIIAKTR-RQLENAKRYLLNNKVDCKILSKRENHFS 414

Query: 375 DILVLVRKRKDTPLITF--LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           D  V +        + +  +     N+  I    +    L           L    +++ 
Sbjct: 415 DDKVKLLTMHSIKGLEYKVVFIIGINENVIPYSPDGNIDLEQESME---RRLLYVGMTRA 471

Query: 433 DDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
            D  F+    +P    ++ +   +        + + +I   +     K   +  +   + 
Sbjct: 472 KDKLFLTSSGNPSKFINDINPKYLKLNNENGFSRFNHIGIDSYRFKEKIVDLYSHEEVVR 531

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFIS 519
                         ++       + I 
Sbjct: 532 QW--------VIEELINTLNYPLELID 550



 Score = 50.3 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 33/105 (31%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           + ++V+++T+H+ KGLE  VVF++     V  +     + +                   
Sbjct: 414 SDDKVKLLTMHSIKGLEYKVVFIIGINENVIPYSPDGNIDL------------------- 454

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                           +    RLLYVGMTRA D+L +    N S 
Sbjct: 455 --------------EQESMERRLLYVGMTRAKDKLFLTSSGNPSK 485


>gi|16804307|ref|NP_465792.1| hypothetical protein lmo2268 [Listeria monocytogenes EGD-e]
 gi|224500934|ref|ZP_03669241.1| hypothetical protein LmonFR_00185 [Listeria monocytogenes FSL R2-561]
 gi|81507825|sp|Q8Y510|ADDB_LISMO RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|16411738|emb|CAD00346.1| addB [Listeria monocytogenes EGD-e]
          Length = 1157

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 93/748 (12%), Positives = 195/748 (26%), Gaps = 169/748 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q ++       IA  I                  + +DI +L R   D  ++        
Sbjct: 307  QANNRRAEIEGIAREIRQQALNG----------YRYRDIAILTRNLGDYDVLCETVMEA- 355

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I    + +  +  H  I+ + +    IL + + +  F  +     F+ +E      
Sbjct: 356  --YNIPTFIDKKRAMAKHPFIEFIRSSLDAILFNWKYEPIFQAVKTEFFFDITEKSSLNR 413

Query: 453  --------------IFKICTQRHETETVYEYIQKFANCGISKFQHVIKY---IHELIHIA 495
                          I        E + +Y  I+  +   + +    I     I+E+ ++ 
Sbjct: 414  RKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLSTNVLPQTDEEIHMQSIINEMRNLI 473

Query: 496  QF-CSPHDF--------FTLILGAKKGRQQF--------------------ISRFGNEVI 526
                S  +             L      +Q                     ++R   +  
Sbjct: 474  VNPLSTLELNLRKAKTGMEFALALYHYLEQVNAVERLESWRQRAEEQGYLELAREHEQAW 533

Query: 527  DVLDEFLNFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              +   L+  +         L      +              + ++V +  +  AK L+ 
Sbjct: 534  SSISALLDEFVEVLGEETLDLDSFTEIIGTGLDALEFSLLPPSLDQVVLSDMENAKLLDM 593

Query: 586  PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V+F +     V   +   K        D         +  ++NNI              
Sbjct: 594  KVIFAIGMNDGVMPLRQKDKGIFSDQDRDALRAEDSKLKPSAKNNIG------------- 640

Query: 646  EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
            E + L Y  ++  SD+L +   +     K  ++  +   +   F+       +   + ++
Sbjct: 641  EEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKGQFNELNESVYLTDPSLLS 700

Query: 706  KDE-------------------------------WIAYEWSTHHPENTPLEREETIKQLM 734
              E                               W     S    E   +  ++ +  L 
Sbjct: 701  DAEQSSYIRSKQATLGLLTSQLQMYKRGYTLSSVWWDAYNSYFENEKESIMAKQVLSSLY 760

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
             E K      +  KN   E    + S ++                  E      Q  + G
Sbjct: 761  YENKTKPLQETTAKNLFGETIHASVSRMEKFFSCEFQHYAQYGLKLEERGHFQLQAVDMG 820

Query: 784  LIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
             I H  ++ I    +       N     C + AKL        +   I   L +  M   
Sbjct: 821  EIFHGAMEWISAELKRNNLDWGNLTEEECKQMAKLAMTFLAPKIQHEIL--LSSKRMEYI 878

Query: 841  M------------------SCDSYSEVSVSGKINCPKK------------DIIISGRIDQ 870
                                  ++  V +                     ++++ GRID+
Sbjct: 879  QYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLKGDIPPLKIPLQSDSELLLQGRIDR 938

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLV-- 921
            I  +       + I +YK+  H    +  + Y    Q+  Y  I+         K+    
Sbjct: 939  IDMAEQDDRTFLRIIDYKSSSHDLA-LTEVYYGLALQMLTYLDIVVTNAQKMIGKTAEPA 997

Query: 922  CLLIYVSEPKVF----IIPQNKLNKAFA 945
             +L +    +       +    + K   
Sbjct: 998  GVLYFHMHNQYVQAEKELSDEAIAKELQ 1025


>gi|317127868|ref|YP_004094150.1| helicase [Bacillus cellulosilyticus DSM 2522]
 gi|315472816|gb|ADU29419.1| putative helicase [Bacillus cellulosilyticus DSM 2522]
          Length = 772

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 28/221 (12%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           ID++ +HI++DE QD S I + + +++T             +T+  +GD++QSI+  +G 
Sbjct: 520 IDKKYSHIVVDEAQDLSFIHFAIFKTIT-------------KTMTILGDKEQSIFMDYG- 565

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                     I        G     + +  S+RST +I+   +KV +             
Sbjct: 566 ----QNNWSEILDSFFEKNGNDMY-LSMETSYRSTKEIIDTANKVLTNQFGKNHKGITPL 620

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                  S        +L + ++ Q +         W   +  +         A+R+   
Sbjct: 621 NRKGSEVSYTRVNSGRELVDGIILQVEE--------WMKQYKRIAIIHKDEAKAKRLTEH 672

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           +      + I+ N ++   Q + I VL            + 
Sbjct: 673 LKKEYSNEVIYINPEQEFTQTR-INVLSSYNSKGMEFDAVL 712


>gi|255525954|ref|ZP_05392880.1| superfamily I DNA helicase [Clostridium carboxidivorans P7]
 gi|296188676|ref|ZP_06857064.1| hypothetical protein CLCAR_4212 [Clostridium carboxidivorans P7]
 gi|255510373|gb|EET86687.1| superfamily I DNA helicase [Clostridium carboxidivorans P7]
 gi|296046940|gb|EFG86386.1| hypothetical protein CLCAR_4212 [Clostridium carboxidivorans P7]
          Length = 762

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 27/142 (19%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +N + D +DL        K   V          +  HI+IDE QD S+ Q  V+  +  +
Sbjct: 504 ENDIFDSDDLAAMMYLKFKIEGVPEKY------KYKHIVIDEAQDYSMFQIAVLNEMVLN 557

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN-AGQKFSIIELP 261
                       +L  VGD  Q IY + G             +    +    K + I+L 
Sbjct: 558 -----------NSLTIVGDIGQGIYYYKG---------IERWESLVDDVFRNKATYIQLT 597

Query: 262 LSFRSTADILTVVDKVFSIPEN 283
            S+RST +I+   +KV    +N
Sbjct: 598 QSYRSTVEIIEFANKVLKKQKN 619


>gi|229160111|ref|ZP_04288112.1| UvrD/REP helicase [Bacillus cereus R309803]
 gi|228623322|gb|EEK80147.1| UvrD/REP helicase [Bacillus cereus R309803]
          Length = 776

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 35/187 (18%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 499 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 558

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 559 RLF-----------PAAKMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 600

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  S+RST  I+      F+     +G   ++      + +        +L + + ++
Sbjct: 601 INLTRSYRSTKPIIE-----FTRNLVPEGKKINAFERDGEKPTVTKVADYSELHKHITAK 655

Query: 318 HDSQCNP 324
                  
Sbjct: 656 VAELQTE 662


>gi|311977964|ref|YP_003987084.1| putative ATP-dependent DNA helicase [Acanthamoeba polyphaga
           mimivirus]
 gi|308204914|gb|ADO18715.1| putative ATP-dependent DNA helicase [Acanthamoeba polyphaga
           mimivirus]
          Length = 1031

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 22/97 (22%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           I H+ IDE QD + IQ+++     + F           T+   GD  Q+IY F  +    
Sbjct: 218 IKHLFIDEAQDLNNIQFDIALMFKKHF---------GTTIHLCGDPNQNIYQFRRSSNSY 268

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           ++                    EL L+FRST +I+  
Sbjct: 269 LMEF-------------PAKKFELTLNFRSTQEIIDF 292


>gi|82000378|sp|Q5UR49|YR568_MIMIV RecName: Full=Putative ATP-dependent DNA helicase R568
 gi|55417181|gb|AAV50831.1| unknown [Acanthamoeba polyphaga mimivirus]
          Length = 695

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 22/97 (22%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           I H+ IDE QD + IQ+++     + F           T+   GD  Q+IY F  +    
Sbjct: 218 IKHLFIDEAQDLNNIQFDIALMFKKHF---------GTTIHLCGDPNQNIYQFRRSSNSY 268

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           ++                    EL L+FRST +I+  
Sbjct: 269 LMEF-------------PAKKFELTLNFRSTQEIIDF 292


>gi|126463962|ref|YP_001045075.1| superfamily I DNA/RNA helicase-like protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126105773|gb|ABN78303.1| Superfamily I DNA and RNA helicases-like protein [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 554

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/549 (12%), Positives = 144/549 (26%), Gaps = 146/549 (26%)

Query: 215 TLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
              AVGD+ Q+IY + GA  + +L  ++   +          + EL  ++RS+  I+   
Sbjct: 104 RFCAVGDDDQNIYDYGGASARHILEFEQFFPRH--------RLSELTQNYRSSGAIVEAA 155

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
             +    ++ +         I   ++R          +    +    C  +  S +    
Sbjct: 156 AVIVEKLQDRRK-----AAVISVDTARRADPLQGHYHDPQRPELGRVCLLEAASASIEDQ 210

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           +         LA  +                   +        VLVR R        + R
Sbjct: 211 ADAACLELLRLAAEVGE-----------------KKCNWSSTAVLVRTRAQAA----VLR 249

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                + I++  + R          D++   R                            
Sbjct: 250 TALAAHGINISYDLR----------DIVPFLRI--------------------------- 272

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                  ET    + + +         +  ++ + E + I    +        L      
Sbjct: 273 ------RETILARKALDRSLQDNRWLGRGDLQRLGENLDIRFGSTWSKAIRRHLEEIGSE 326

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
            +  ++   E   VL++F+ +  R +                           + + V +
Sbjct: 327 IEPGAQVSPE--QVLEDFVEWARRWQ--------------------------PDQDGVAV 358

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           MT H++KGLE   V ++D+G                                        
Sbjct: 359 MTAHSSKGLEFDNVLVLDSGW--------------------------------------- 379

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                ++  Q+   RLLYV  TRA   L     + T      +      +++       R
Sbjct: 380 --LGQRREAQDSDRRLLYVAATRARHSLTFVTSATTRGRVLEDLNDAPAILHRKPDESLR 437

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            K             +   +       +P   E  +  +     I            +  
Sbjct: 438 PKDPPGIWRPLTLHDVYLSFLAREAAASPGRMETALSTVPTGAPIAFTPVIHASPGGDFD 497

Query: 755 YILNPSTID 763
             +  + ++
Sbjct: 498 IRIAGTALE 506


>gi|258652891|ref|YP_003202047.1| hypothetical protein Namu_2712 [Nakamurella multipartita DSM 44233]
 gi|258556116|gb|ACV79058.1| hypothetical protein Namu_2712 [Nakamurella multipartita DSM 44233]
          Length = 543

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 49/184 (26%), Gaps = 23/184 (12%)

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC-------------TKNAKLWPAKE 820
                    G + H +++ +  L   KR                      K+    P + 
Sbjct: 66  EDPFAPAPVGTVAHTVMERLMQLARTKRTPLAARRIMYQLMVDLTSPNPDKHWPGLPVER 125

Query: 821 YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP-KKDIIISGRIDQI--SISQQN 877
               L  +        +   +            +++      +   G ID +  +     
Sbjct: 126 TPEWLALVDSAFM--GLFGIVDPRKIVVHKTELRLDDVFIGGVPFKGFIDMVSQAEDDDG 183

Query: 878 IF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD-SYPNKSLVCLLIYVSE--PKV 932
            +  I +YKT   +P         H  Q+ +Y   L      +K     + Y  +   K 
Sbjct: 184 RWLEIVDYKTGARLPYTPFGAVNDHHDQIRMYRIGLAQKLGSDKRFRGSVYYTRDKLAKS 243

Query: 933 FIIP 936
             +P
Sbjct: 244 VRVP 247


>gi|153953241|ref|YP_001394006.1| ATP-dependent DNA helicase [Clostridium kluyveri DSM 555]
 gi|219853876|ref|YP_002470998.1| hypothetical protein CKR_0533 [Clostridium kluyveri NBRC 12016]
 gi|146346122|gb|EDK32658.1| Predicted ATP-dependent DNA helicase [Clostridium kluyveri DSM 555]
 gi|219567600|dbj|BAH05584.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 709

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 74/234 (31%), Gaps = 23/234 (9%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           K ++ I HI+IDE QD S +Q+ VI+ LT+            ++   VGD  Q I     
Sbjct: 490 KYNKGIRHIVIDEAQDYSPLQFWVIKELTDC-----------KSFTIVGDVNQMI----- 533

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             P          +   T+         L  S+RST +I++  +K     +    + +  
Sbjct: 534 -IPSENKCAMMGLKDIFTDIE--VKNFSLDKSYRSTNEIISYANKYLKHNKIISLVRKGK 590

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
               +   +    V  + L + V  +     +                     +   +  
Sbjct: 591 EVIEKQIDNHKELVDKI-LHDVVELKERGYESIAVICRDLKNTEALGNLIKRRMHINLID 649

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRK---RKDTPLITFLTRFLKNDYKI 402
             + +  +  +            D +++V       DT      TR L   Y  
Sbjct: 650 RENMIYSSGEVILPSYFAKGLEFDAVIMVDTSQSNDDTLKYIMATRALHELYVY 703


>gi|192288511|ref|YP_001989116.1| double-strand break repair protein AddB [Rhodopseudomonas palustris
           TIE-1]
 gi|192282260|gb|ACE98640.1| double-strand break repair protein AddB [Rhodopseudomonas palustris
           TIE-1]
          Length = 1049

 Score = 70.0 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/364 (10%), Positives = 92/364 (25%), Gaps = 46/364 (12%)

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +   + R        +RI     A+  +   V L      V+         +   +  +
Sbjct: 607 AFGDRVVRRPELAEAPIRIYGPLEARLTQQDRVVLGGLVEGVWPPAPRIDPWLSRPMRHE 666

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            G+ +   +     +  +  +                       D++ I   +       
Sbjct: 667 LGLDLPERRIGLSAHDFAQALGA---------------------DEVFITHAAKVGGAPA 705

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM- 734
              R  + +   +  +  +  K +    ++    +    S               + L  
Sbjct: 706 VASRFLHRLEAVAGEDRWKAMKARGQIYLDYTHELDRPESVTPIAQPAPRPPRIARPLKL 765

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
               I   L  P          L+P          L+ +       +RG  IH  L    
Sbjct: 766 PVTAIEDWLRDPYTIYAKYILRLSP----------LDPVDMPLSGADRGSAIHAALGEFT 815

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----------D 844
              +    +   +   +  +   A    +             + T  +            
Sbjct: 816 ERYQDALPDDPVTALRQIGQKHFAPLMDHAEARALWWPRFLRIATWFAAWEQQRRTGVVQ 875

Query: 845 SYSEVSVSGKINCPKK-DIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
             +E   +  I    + +  +S R D+I      +  I +YKT H      + +      
Sbjct: 876 VQAERRGTLMIPLGGERNFELSARADRIERRDDGSYAILDYKTGHPP--TGKQVRMGLSP 933

Query: 903 QLSI 906
           QL++
Sbjct: 934 QLTL 937


>gi|299133348|ref|ZP_07026543.1| double-strand break repair protein AddB [Afipia sp. 1NLS2]
 gi|298593485|gb|EFI53685.1| double-strand break repair protein AddB [Afipia sp. 1NLS2]
          Length = 1055

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/432 (13%), Positives = 121/432 (28%), Gaps = 68/432 (15%)

Query: 553  ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                +   + R        +RI  +  A+  +   V L      V+         +   +
Sbjct: 610  FATAFASGMVRRPQNEDASLRIYGLLEARLTQCDRVILGGLVEGVWPPAPRIDPWLSRPM 669

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
              D G+ +   +     +  + L+                         +I+   +    
Sbjct: 670  RHDLGLDLPERRIGLTAHDFAQLLGAED---------------------VILTHAAKAGG 708

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
                  R  + M   +          +    I   E + +  S         +   T++ 
Sbjct: 709  APSVASRFLHRMKAIAKPEAWDAALERGARYIRYAEALDHPDSIQPIAQPAPKPPVTLRP 768

Query: 733  LM-DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL- 790
            L     +I   L  P          L P          L+ +       +RG  IH  L 
Sbjct: 769  LQMSVTEIEDWLRDPYTIFAKRILKLTP----------LDPIDLPLTAADRGSAIHNALG 818

Query: 791  ---QVIFTLPEHKRKNFITSYCTKNAKLWPA--KEYKNLLLSITRLLENPMMTTAMSCDS 845
               +             + S+  ++        +          R+ E          + 
Sbjct: 819  DFTEAHSKNLPGNIAAELRSFGERHFAALMEHPEARALWWPRFLRIAEWFAGWEIKRRED 878

Query: 846  YSEVSVSGKINCP-----KKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYT 899
             +E++   +   P      +  I+S R D+I   S +   I +YKT        + +   
Sbjct: 879  ITEIAAELRGEIPIPLANGRRFILSARADRIEYRSDRTFAIVDYKTGTPPSG--KQVRLG 936

Query: 900  HIAQLSIYEKILK----DSYPNKSLVCLLIYVSEP--------KVFI----------IPQ 937
               QL++   IL+      +P ++ V  L+YV           K+            +P 
Sbjct: 937  LAPQLTLEAAILRGGGFKPFPARASVSELVYVRLNGNNPAGEEKIVDLRIARGNEPQLPD 996

Query: 938  NKLNKAFAEIST 949
            +  ++A A+++ 
Sbjct: 997  DAADEALAKLTA 1008


>gi|305680768|ref|ZP_07403575.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
           14266]
 gi|305658973|gb|EFM48473.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
           14266]
          Length = 264

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 53/189 (28%), Gaps = 45/189 (23%)

Query: 756 ILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQ--VIFTLPEHKRKNFI 805
            L+PS  +   +  L                   RG ++H  L+   ++  PE      +
Sbjct: 7   ALSPSRANDYMQCPLLYRFRAIDKLPEPKTVAQVRGTLVHACLEDMHLWERPERTYPAVV 66

Query: 806 TSYCTKNAK--LWPAKEYKNLLL-SITRLL-------------ENPMMTTAMSCDSYSEV 849
                  A          + +    +   L             ENP    A++     E 
Sbjct: 67  KRLRPNWADMCGEDPSLLELVPEGEVYEFLVGCRSLLKGYFLMENPQGFDALA----CEK 122

Query: 850 SVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTH----IAQL 904
            V   +      + + G ID++ ++    + + +YKT              +      Q+
Sbjct: 123 FVDAVLP---NGVPVRGFIDRVDVAPTGEVRVVDYKTGKKP-------LPRYSGQAKFQM 172

Query: 905 SIYEKILKD 913
             Y  +   
Sbjct: 173 RFYALVWWR 181


>gi|327329642|gb|EGE71398.1| UvrD/Rep helicase [Propionibacterium acnes HL096PA3]
          Length = 751

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 110/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D          R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDMLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 663

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +V+   R      + +  F  +   I +   D     D 
Sbjct: 664 APVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|149278326|ref|ZP_01884464.1| hypothetical protein PBAL39_12232 [Pedobacter sp. BAL39]
 gi|149231092|gb|EDM36473.1| hypothetical protein PBAL39_12232 [Pedobacter sp. BAL39]
          Length = 970

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 79/828 (9%), Positives = 191/828 (23%), Gaps = 146/828 (17%)

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI 243
           + Q  S  Q   +      F  GK  +           ++Q I  +    PK        
Sbjct: 136 DFQHLSPEQQAFLEQFWSSFSAGKQLNH----------QEQFIRMWRRM-PKLYAGFHAA 184

Query: 244 NQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
            + +         +  L    ++       V           G +  S            
Sbjct: 185 LEAK--GLTTMAHVYRLLAEGKADRP--EFVADFARGKLVFAGFNALSNAEAEIFKRWQK 240

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL---PQESSASILARRIAYTISNMIGTD 360
           +   +  ++                     + L           L R I   +       
Sbjct: 241 EEKGLFYFDTDDYYMKDDTQEAGLFLRKNIERLGLPNALVEQKELIRSIQKEVKVYKTQG 300

Query: 361 TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKD 420
                   +    +D  +L   R +   I  +         +       +   + L   D
Sbjct: 301 QTAQAKILQQELLQDYPML-DSRDNAGKIALILADESLLLPVLQTIPTSYQTVEGLNSID 359

Query: 421 LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF---KICTQRHETETVYEYIQKFANCG 477
           L                  +L S +F  ++  +    ++   + +T    E     ++  
Sbjct: 360 LNV-----------TMGYPLLASSIFGLADLWLSIQSQLTEGKKDTVYYREVEAFLSHPL 408

Query: 478 ISKFQHVIKYIHE--LIHIAQFCSPHDFFTLILGA------KKGRQQFISRFGNEVIDVL 529
                     + +  L               +L          G     S        +L
Sbjct: 409 TGVAAEQRDVLQQEILAGQLVEVPLSRLQESLLWELFFSRVSGGLTAI-SSLQQVFKRIL 467

Query: 530 DE------FLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-----------------HS 566
           +                  +   L  L   LE Y   +                      
Sbjct: 468 ERQLEDKTLKQTEADLFAATIKELNRLHDTLELYASRLPLPFVLSLIQKAIQGIAVPLSG 527

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                +++M +  ++ L+   V+++     V    ++    I  S+    G+P+      
Sbjct: 528 EPLQGIQVMGLLESRSLDFEHVYVLGLNEGVVPQVNVSPSFIPDSIRRAYGLPV------ 581

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-- 684
                         ++       + Y  + R+    ++       N      R    +  
Sbjct: 582 -------------LENQDAISAYMFYRLLQRSRKVSLVYNGQADDNNTGEPSRFLRQLEF 628

Query: 685 -----VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                      +     +     SI K   +      +   +   +   +   +      
Sbjct: 629 ESGYTFKYYDQSQALAIETVSDFSIPKTGAVLERLHAYLEGHAAYQPRLSATAITTYLNC 688

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
           P + F      I EP  L                  + +  + G  +H +L+  +   + 
Sbjct: 689 PIQFFYKYIAKIEEPKELA----------------ENLEANSIGSTLHLVLERFYAGLKA 732

Query: 800 KRKNF------------------------ITSYCTKNAKLWPAKEYKNLLLSITRL-LEN 834
              +                               +       +    ++     + L++
Sbjct: 733 DDDHITKARISGARKALGELCKSAFATVMFDQEEARAEHSGMEQVMLAIVAEYANVILDH 792

Query: 835 PMMTTAMSCDSYS-----EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH-- 887
                  +          ++  + K+   ++ + + G ID++      + I +YKT    
Sbjct: 793 DEQQAPFTLIELENDEDYKIPFTIKVQGEERRVTLFGIIDRVDQRNGVVRIVDYKTGRDE 852

Query: 888 HVPQEIEHIPYTHIAQLS-------IYEKILKDSYPNKSLVCLLIYVS 928
                IE +      Q +        Y  + + +   + +   L  V 
Sbjct: 853 IGYSSIEELFERDSPQQNKALVQTLFYTYVYEQARGIRGVEPNLYIVR 900


>gi|262282992|ref|ZP_06060759.1| ATP-dependent exonuclease RexB [Streptococcus sp. 2_1_36FAA]
 gi|262261244|gb|EEY79943.1| ATP-dependent exonuclease RexB [Streptococcus sp. 2_1_36FAA]
          Length = 1093

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/653 (10%), Positives = 180/653 (27%), Gaps = 115/653 (17%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A +I   +             ++ KDI +L+    D        + + + Y+I    
Sbjct: 308 EYVAKSIRQRVHDG----------VRYKDIRLLL---GDVEAYQLQLKTIFDQYQIPYYL 354

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETET 465
                +  H  ++ + +L R           + +LK+ L+   +++++          + 
Sbjct: 355 GRSESMAQHPLVQFVESLERLKRYNFQLEDLLNLLKTGLYGNLTQEELDHFEQYLRFADI 414

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
                        S+ +  +  ++ +           F +    A     +F        
Sbjct: 415 KGAGKLAKDFTANSQGKFDLDSLNHIRRRVMTPLQDFFKSRSQTASWLLAKFTEFVQAAR 474

Query: 526 -IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH------------------- 565
             D L   L    + EQ  +  + +  S + +    +                       
Sbjct: 475 LSDNLTALLQGESQQEQERHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSN 534

Query: 566 ----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                A  + V++ +    + L +P V+ +    + F      K  +             
Sbjct: 535 YRTVPATVDVVKVQSYDLIEPLAAPYVYAIGLTQERFPKIAQNKSLLSDEDRA------- 587

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS------------- 668
                +        ++       ++        M  A+ +L++   +             
Sbjct: 588 ---RLNEETDSQAELQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSMSTYL 644

Query: 669 --------------NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                           S     +  ++  ++      ++     + T        +A   
Sbjct: 645 LELTAAPLSLPIIVKKSQASSDDIGSYRALLSQIIELNQEEIDREWTAEEKTFWAVAVRV 704

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN----- 769
                    +   +  K+L  E   P+ L +      ++P  L+ S ++   K       
Sbjct: 705 LRKKLAVEGISIPQISKELKTESLQPETLQALYP--KDQPLRLSASALNEYFKNQYGYFI 762

Query: 770 ------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                  E         + G  +H++ + +  L E   ++F         +     E+++
Sbjct: 763 KYILGLQEEWTIHPDARSHGNFLHRIFEKV--LQEDTSRDFDQRLEVAIDETMRETEFES 820

Query: 824 LLLSITRLLENPMM--------TTAMSCDSYSE------------VSVSGKINCPKKDII 863
           L    +  L    +           ++  +  E                  I    + + 
Sbjct: 821 LYNESSESLFTRQLLLDTAKSTGQVLAQSAGIETIGEETVFGNSKEPF--LILEDGRAVS 878

Query: 864 ISGRIDQISI--SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
           + G++D+I    +  ++ + +YK+        E       +QL  Y   +++ 
Sbjct: 879 VRGKVDRIDRLLADGSLGVVDYKSSETKF-SYEKFFNGLNSQLPTYLAAIQEL 930


>gi|254480462|ref|ZP_05093709.1| hypothetical protein GPB2148_3550 [marine gamma proteobacterium
           HTCC2148]
 gi|214039045|gb|EEB79705.1| hypothetical protein GPB2148_3550 [marine gamma proteobacterium
           HTCC2148]
          Length = 869

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 70/625 (11%), Positives = 154/625 (24%), Gaps = 90/625 (14%)

Query: 334 DSLPQESSASILARRIAYT------ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
           +       A+I AR  A        I+     +          I   D+        D  
Sbjct: 189 ELASAAGEATIQARSYADRQQELSAIARWAAQEYQDDPDCSLGILLADM------NGDRA 242

Query: 388 LITFLTRFLKNDYK-----ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
            + FL R   +        + V  +    L     I+D + +             + ++ 
Sbjct: 243 PLEFLMRREFDSLGDKYNSLPVNFSTGITLDRAPVIRDALRILSVCGETLPMTDLLGLVN 302

Query: 443 SPLFNFSEDD-------IFKICTQRHETETV-----YEYIQKFANCGISKFQHVIKYIHE 490
           S   + +E D       + ++     E   +          K            +    E
Sbjct: 303 SRFTDCNEADSDRVVRLLHQLFDDGEEQLNLGRLRFLSRSVKAGGEQGLAMGERLASCSE 362

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           L        P D+   I                +     ++ +         +   SL  
Sbjct: 363 LRLQRLTQRPSDWVKSICDVLGVWAWPGEGPLDSLEFQQVEAWYKALQEF--SGLDSLAG 420

Query: 550 LISELEQYPPTIKR------AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
            ++         +             + ++++    A GL    ++        +     
Sbjct: 421 RVNFHTALGMLKRCCQNRISQPQTADSGIQVLGPLEAAGLPFDSIWFCGLQGNRWPAPSR 480

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
               I          P+ + +     +  S+  +    ST  +  R        A D+ I
Sbjct: 481 PNPFI----------PMALQRKHDMPHSSSE-REWNYASTLTDQYRA-------ACDRFI 522

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
                      +           +                +  ++W+A   ++   +N  
Sbjct: 523 ASYSRQLDGAPEVPSPLLGAFPLEHMEA----------TVLIPEQWLAQASASSLEQNLN 572

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
            +     K  M   +    +     N                    L    +     +RG
Sbjct: 573 AQAPMVSKSEMSHIRGGSGILQQQANCP-----FRAFASKRLLLEPLGDYRAGLSAADRG 627

Query: 784 LIIHKLLQVI--FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-------LEN 834
            I+H  L V+                   +      A     +  S+  L       LE+
Sbjct: 628 SILHDALYVLWGEINDSAALHALGREALDEKIASASAAAINAVPESVRLLVGMHCLDLES 687

Query: 835 PMMTTAMSCDSYSE--------VSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKT 885
             +   M+     E        V+    I+    ++ +S R+D++      +  + +YK+
Sbjct: 688 QRLQKLMTQWVQLELARNPFKVVAREEPIDFKLGELSLSLRVDRVDELEDGSRIVIDYKS 747

Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKI 910
                 +      +   QL +Y   
Sbjct: 748 GRSSLADWLGERPS-QPQLPLYGLA 771


>gi|187934950|ref|YP_001886167.1| LexA repressor [Clostridium botulinum B str. Eklund 17B]
 gi|187723103|gb|ACD24324.1| LexA repressor [Clostridium botulinum B str. Eklund 17B]
          Length = 513

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 69/242 (28%), Gaps = 33/242 (13%)

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINH 179
            +           +   Y    +    +DF+D+ +   +  K+  +         ++  H
Sbjct: 190 LRKNSEKRRAIFEVLLKYNSNLQNINKVDFQDMALLALNQAKQYPI---------EKYTH 240

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           ILIDE QD + ++ E +++L +             ++  + D  QSIY            
Sbjct: 241 ILIDESQDLTRVELEFLKALYD--------KKPYSSITFISDAAQSIY--------HQAW 284

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS--------IPENAQGLSEDS 291
             +     +           L  ++R+TA I      +                 L +  
Sbjct: 285 LIKNRSFASLGYDMTGKSNLLSKNYRTTAQIAEAAFSLIDIHKDLLQNDNLVKPNLIDKQ 344

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                + +        + +   +          +     +      +E    + A  I  
Sbjct: 345 GDYPTYENFENKFEECIYIVNLINETLKEGYKLKDIVIIARLKKQLKEFRKCLQAYYIPC 404

Query: 352 TI 353
           +I
Sbjct: 405 SI 406



 Score = 44.5 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 59/188 (31%), Gaps = 41/188 (21%)

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-----VLDEFLNFTLRNEQNSY 544
            LI        ++ F             I+    E        ++               
Sbjct: 339 NLIDKQGDYPTYENFENKFEECIYIVNLINETLKEGYKLKDIVIIARLKKQLKEF----R 394

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
             LQ     +           + + +EV+++T+H+ KGLE  VV +    ++V       
Sbjct: 395 KCLQAY--YIPCSIFNDNDEINFSEDEVKLVTMHSVKGLEFKVVIIAGLNAKVMP----- 447

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                          +   +++  +  + +              +LLYVGMTRA+++L +
Sbjct: 448 ---------------LCPVKNEEEDMDMLEFR----------ERKLLYVGMTRATEKLFL 482

Query: 665 CKHSNTSN 672
             H   S 
Sbjct: 483 TSHGMPSK 490


>gi|218682570|ref|ZP_03530171.1| double-strand break repair protein AddB [Rhizobium etli CIAT 894]
          Length = 898

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/396 (10%), Positives = 90/396 (22%), Gaps = 46/396 (11%)

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
           R      +  E  D L   L   +  + Q      Q +            +  + +H  +
Sbjct: 415 RGNLADLWSGEAGDALAALLGEVIDTDGQIEADGPQWIDIMAALAAGHAVKPRALSHPRL 474

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            I     A+      + L       +  +      I   +  + G+     +     +  
Sbjct: 475 FIFGTLEARLQSVDTLILGGLNEGTWPGQTANNPFIPRMMKTEIGLEPPERRIGQLAHDF 534

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                                 M   +  LI  +     +      R    ++  +    
Sbjct: 535 E---------------------MANGTRHLIYSRSLRQGSTPTVASRWLQRLLALAGEAF 573

Query: 693 ERVKKIKLTNSIN-KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
           E   K +    +         E        +P              ++ +    P     
Sbjct: 574 ESELKGRGNRFLRWAALIDRDEAQAPAQRPSPKPPVALQPTSYSFSEVGRLRRDPYAIYA 633

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP----EHKRKNFITS 807
                L+P                D     RG + HK++                  +  
Sbjct: 634 RRILRLDPVDA----------FNRDPGAAERGTLYHKIIDRFIREAHVAGTPDAAAAMER 683

Query: 808 YC------TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
                           A             LE           + +EV   G +     +
Sbjct: 684 ILSELFDMEHLPPHIDAVWRPRFRAVARAFLEWEAERRPGIRKTLTEVR--GGVELEAIN 741

Query: 862 IIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHI 896
           I ++G  D+I ++      I +YKT ++       +
Sbjct: 742 IRLTGVADRIDVTGPNAADIIDYKTGYNPSPAQARV 777


>gi|306831078|ref|ZP_07464239.1| ATP-dependent nuclease subunit B [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426644|gb|EFM29755.1| ATP-dependent nuclease subunit B [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 1082

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 81/732 (11%), Positives = 203/732 (27%), Gaps = 118/732 (16%)

Query: 264 FR---STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
           +R   ST ++                       + +       ++  +   +   +  D 
Sbjct: 229 YRAAFSTGNVYQASLDFLRGLAAKFHAQPQYVESSQKSHEAFSKLSKLFEAKHDFTSSDV 288

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
                 +   + +D + Q+     +A+ I + +               +  + KDILVL+
Sbjct: 289 TLTADDKKHYAIWDVINQKEEVEHVAKAIRHKL--------------YQGYRYKDILVLL 334

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
               D          + + Y I         ++DH  +  + +L R    +      V +
Sbjct: 335 ---GDVDSYRLQIGKIFDKYDIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNL 391

Query: 441 LKSPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           LK+ L+  F ++D+          +   +         + K +  + +++ +        
Sbjct: 392 LKTGLYGNFKQEDLDLFEQYLIYADIKGQSKFAKEFTIVYKGKKHLAFVNRMREQIMTPL 451

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVI-DVLDEFLNFTLRNEQNSYS------------- 545
              F           ++ ++      + D L+  +     NEQ  +              
Sbjct: 452 LALFKAQKQRGSSLLEKLMTFLHAIHLPDNLEGMVATFSENEQEKHEQVWRTFTGILTQF 511

Query: 546 ---------SLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGS 595
                    SL + +S +       +        + V + +    +   +  VF +    
Sbjct: 512 QTIFGQEKLSLDDCLSLIRSGMLAAQYRVVPATVDVVSVKSYDLVEPHTNKFVFALGMTQ 571

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             F         I             I +S   N     + +   K        L     
Sbjct: 572 AHFPKIAQNSSLISDEE------RAQINESTDDNQRFDIVSRENIKKNHFAALSLFNSAT 625

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
               ++L++      +  + +      ++         + +    T++ +   + A    
Sbjct: 626 ----EELVLSLPQIANEAEDTESSYLTELASFGVPVLAKGRNRLSTDAEDIGNYKALLSR 681

Query: 716 THHPENTPLE--------------------REETIKQLMDEQKIPKKLFSP--------I 747
                   +E                    R++   + ++   I   + +          
Sbjct: 682 VIEVNRLAIEEERELSKEEQTFWSVAVRYLRKKLAAESIELPLIKDNMQTKTVSADVIEA 741

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVI--- 793
           +   +E   L+ S + T      +  L                 N G  +H++ +++   
Sbjct: 742 RFPSDELISLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKD 801

Query: 794 -------FTLPEHKRKNFITS-----YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
                    L +  +   +       Y       +     +++  S   +L +       
Sbjct: 802 DSNHSFDSKLDKAIQTTNLEDDFKFVYEEDEESRYSLTVLEDIARSTATILRDDAQIQVE 861

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTH 900
           S     E +    I      + I G ID++   S  ++ I +YK+  +   +I+      
Sbjct: 862 SE----EETFELMIA---NSVRIRGIIDRVDRLSDGSLGIVDYKSSRNTF-DIQKFYNGL 913

Query: 901 IAQLSIYEKILK 912
             QL  Y + L+
Sbjct: 914 SPQLVTYVQALR 925


>gi|115379646|ref|ZP_01466729.1| hypothetical protein STIAU_7080 [Stigmatella aurantiaca DW4/3-1]
 gi|115363356|gb|EAU62508.1| hypothetical protein STIAU_7080 [Stigmatella aurantiaca DW4/3-1]
          Length = 355

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 66/182 (36%), Gaps = 13/182 (7%)

Query: 777 NQTFNRGLIIHKLLQVIFTLPEHKRKNFI---TSYCTKNAKLWPAKEYK--NLLLSITRL 831
            +  + G  +H +L+ +                       + W A      +L      +
Sbjct: 1   RRPLSFGKALHAVLERLLQEVIDTEYAGALSEERALQLYREAWAASGLSGLDLFQQGLGI 60

Query: 832 LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVP 890
           L++ +       DS   ++V  +   P     + G ID++  + ++ I + +YK++H + 
Sbjct: 61  LQDFVRQQ-GRVDSRDILAVEKEFRLPVGPFTVLGFIDRVDWVDEETIAVIDYKSNHQLF 119

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYP-NKSLVCLLIYVSEP--KVFIIPQNKLNKAFAEI 947
              E        QLS+Y    +  +P  K +   +  +     +     + +L+ A A +
Sbjct: 120 TREELDSS---LQLSLYALAARRMWPWAKKVRLSMWMLRHGVRQETTRTEEQLDAALAYV 176

Query: 948 ST 949
            T
Sbjct: 177 ET 178


>gi|328755292|gb|EGF68908.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1]
          Length = 751

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 111/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  ++   D  Q IY       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIYIAEDSHQRIYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 663

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +V+   R      + +  F  +   I +   D     D 
Sbjct: 664 APVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|313891346|ref|ZP_07824962.1| putative ATP-dependent nuclease subunit B [Dialister
           microaerophilus UPII 345-E]
 gi|313120121|gb|EFR43297.1| putative ATP-dependent nuclease subunit B [Dialister
           microaerophilus UPII 345-E]
          Length = 1138

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 85/711 (11%), Positives = 193/711 (27%), Gaps = 128/711 (18%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
           ++  T         +  S+    IA  I  ++           + ++ +DI VL+R    
Sbjct: 291 EKEETDGGIYPSSAADRSVEIDFIARKILTLVRD---------KKLRYRDITVLLRN--- 338

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI---LSQEDDLSFVCML- 441
             L T L   +   Y++ V  N +  + +H  I  +  L  F+    ++++      +L 
Sbjct: 339 PELYTDLIERIFKKYELPVFINKKDTMNNHPLIVSVTGLLEFLTAQANRKNSGYSRHILF 398

Query: 442 ----KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
                  L NF  + + K+           +++ +++    +    +    + E I  ++
Sbjct: 399 PILKTGLLKNFPPEKVNKLENYIIKNGIRFFQWDKEWNYRTVKDIDNPENELSE-IEKSE 457

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDEFL------NFTLRNEQNSY---- 544
               ++    +L      ++  +      E   +L E+L            ++N +    
Sbjct: 458 NEEANNCRKKLLETLGNLEKEWNTNTSVKERCRILYEWLVSQNIPQILAERDKNEFEKTR 517

Query: 545 --SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               +Q     +      +  A      E   M +  +         + DT   + +   
Sbjct: 518 KKPHIQAWKKFISLLDELVNIAGEDRLPEEYFMNILKSGLFNLSFATIPDTLDHITATSI 577

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS-------------TQEEYNR 649
            +  H+  +    PG+          N       +    +                E   
Sbjct: 578 SRGYHMESTAVFIPGMANGEFPKDIENTNFITEAERKHLAKENTLTLGNDFVFNIYEEQF 637

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             Y+ +TRA   + I      S  K       Y  +    +  +     + T       +
Sbjct: 638 YTYLALTRAKKYMYISYPKTDSENKPLEPSFIYKKIISLNYAHKEEIADRPTYDTKDMTF 697

Query: 710 IAYEWSTHHPENTPLER------------EETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
            +            L +            +    Q  +E               +    L
Sbjct: 698 FSNPKQAITLLPEILRQGLPKKDSFWTYLKNWATQSHNEYAELFYDQQKSFKYNSTASTL 757

Query: 758 NP-----------------STIDTKGKTNLESLL-------SDNQTF----NRGLIIHK- 788
           +                  S ++       +  L                 + G  +H  
Sbjct: 758 SQDIVNKLFKPYGKFYGSISQLEEYRSCPYKYFLNRGLKLSDRQDGRIQNIDFGNYLHSG 817

Query: 789 ------LLQVIFTLPEHKRKNFITSYCTKNAKLWPA-KEYKNLLLSITRLLENPMMTTAM 841
                 LL  +    +    + I ++  + + +      +  L    T    + ++    
Sbjct: 818 LKRFGNLLSSMNKTWKDLSDDEIDAFSNQISSIITPLVAHGTLTSDATNAYTHRLLNMTF 877

Query: 842 SCDSYS---------------EVSVSGKINCPKKD-IIISGRIDQISISQQNIF------ 879
                                E      I    KD   + G+ID+I     +        
Sbjct: 878 KKSIKQFKNWSENSDFKTTDLEREFKINIKADDKDTFTLRGKIDRI----DSYTTETSQC 933

Query: 880 ---IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIY 926
              + +YKT      +++ I      QL  Y   +    P K+++   L+Y
Sbjct: 934 ALAVCDYKTG-IQSIDLQSIISGIKLQLVTYMLAMIKENPEKNIIPTALMY 983


>gi|227501811|ref|ZP_03931860.1| helicase [Corynebacterium accolens ATCC 49725]
 gi|227077836|gb|EEI15799.1| helicase [Corynebacterium accolens ATCC 49725]
          Length = 752

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/338 (13%), Positives = 97/338 (28%), Gaps = 57/338 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            L+++ES      D W  P    S++   +  S E          +  Q A         
Sbjct: 417 DLAVDESVVGCIDDFW--PELDPSEVLAALLSSREHIASAARGYDEETQSALYRADGYAW 474

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               S   L  +      +   E  K + D      + +++     D  +     +ST  
Sbjct: 475 TD--SDAALLDELAVLIGLPNPEEKKAAKDA-----EWREQIADAEDALDILSSSESTDN 527

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE------INH 179
              + +       E    + V+D          L ++++V                   H
Sbjct: 528 DDDMFEA------EILSAHDVID-------AETLAQRQEVRDTRTTAQRAREDHTWAFGH 574

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           I++DE Q+ + ++W ++                 R +  VGD  Q+        P  V  
Sbjct: 575 IIVDEAQELTPMEWRMLFR-----------RCPSRWMTLVGDTSQT------GSPAGVDD 617

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                +       Q+F    L +++R+   I  + + +         L+          +
Sbjct: 618 WGEALE---PFIAQRFRHHLLTVNYRTPEPITELANGL---------LASIDPDATPAIA 665

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            R G                ++ + +  +     ++  
Sbjct: 666 IRDGAPVRRLADADFTPGVTTEDDGRLTAVIDATNAES 703


>gi|30089870|ref|NP_839900.1| hypothetical protein P335p09 [Lactococcus phage P335 sensu lato]
 gi|21954659|gb|AAM83048.1|AF489521_9 hypothetical protein [Lactococcus phage 4268]
          Length = 268

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 61/189 (32%), Gaps = 30/189 (15%)

Query: 751 INEPYILNPSTIDTKGKTNLESLL--------SDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
             E    + S I T  +               S  +    G   H +L+      +    
Sbjct: 2   AEEKPRFSFSDIRTFQECPFRLRERKAKRYMESPTEAMLVGSYAHAMLE----GDKSTDD 57

Query: 803 NFITSYCTKNAKLWPAKE-----YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
                Y      +    +     +K++++++  + +     +  +  ++ E+ +      
Sbjct: 58  FIQEHYVDMMGNIGKKNQGIKKVFKDIVMAVNEVKKTETYQSFDTLHTHKELYI----RA 113

Query: 858 PKKDIIISGRIDQI-SISQQNIF-IFEYKTHHHVPQEIEHIPY-------THIAQLSIYE 908
              D +ISGRID +    +  I  I ++KT        +            +  QL++Y 
Sbjct: 114 DYDDFVISGRIDVLRFDHENKIIEIIDWKTAASFEDIFDKNIRAYLEWYSHYREQLALYA 173

Query: 909 KILKDSYPN 917
            ++   + +
Sbjct: 174 WLVAQEFSD 182


>gi|255073569|ref|XP_002500459.1| predicted protein [Micromonas sp. RCC299]
 gi|226515722|gb|ACO61717.1| predicted protein [Micromonas sp. RCC299]
          Length = 1519

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 80/558 (14%), Positives = 145/558 (25%), Gaps = 116/558 (20%)

Query: 172  KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
            ++D   + +++DE QD + +  ++I                      VGD  Q IYSF G
Sbjct: 908  RLDVNFDILMLDEAQDAAPVMADII------------LSQKECGKILVGDPHQEIYSFMG 955

Query: 232  AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
            A+              AT    K     L  SFR   +I  V + +              
Sbjct: 956  AKNAMATVA-------ATVDKSKIVERRLTRSFRFGYEIADVANTLLR----------LK 998

Query: 292  TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
              T     SR      V       S  D +            D+     +    A   A 
Sbjct: 999  GETTCLIGSRRDLPDPVW-----SSWSDQEEVSAVHCLPRPKDADGVTLTLQSYAPGYAA 1053

Query: 352  TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
            T+   +G   I   G       + ++VL R       +      L     I  +      
Sbjct: 1054 TLRTRLGDRPIREQG-------RQLVVLCRSNASVFDVASRILNL----GIKDLKLGFIG 1102

Query: 412  LTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
              +   +  LM + R  +  +D+                   + +     E     E   
Sbjct: 1103 GLEGQRLGQLMDIWRLAVQSDDE-------------LDAITDYFVSRFVKEYLKAKENGV 1149

Query: 472  KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
            K     +   +   K  ++L    +          I+   +G               L E
Sbjct: 1150 KDPEPPLQALKSSAKLSNDLEMQTKIS--------IVEKHRG--------------NLPE 1187

Query: 532  FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV 591
             +    + +  +  S  +  + L                   + T H AKGLE   V L 
Sbjct: 1188 LIEKLKKVDVGTNPSNLKCANYL-------------------LSTAHRAKGLEFDHVLL- 1227

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                  +              + +    ++   +   ++ +             +   L+
Sbjct: 1228 ------WEDFLAVDHCSPVEWDSNGHATLFQIGNMFGDSEIVGA----------DELNLV 1271

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            YV  TRA  +LI+                    + D   N       ++  + +      
Sbjct: 1272 YVAATRAKQRLIVSDALKHLITAPRCNFAATWYLRDRGTNLPLTGMTEVEAAEDWAANEV 1331

Query: 712  YEWSTHHPENTPLEREET 729
                   P +    R  T
Sbjct: 1332 LAQRRGGPAHFATLRCAT 1349


>gi|314986617|gb|EFT30709.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2]
          Length = 751

 Score = 69.6 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 109/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 663

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
               +   R      + +  F  +   I +   D     D 
Sbjct: 664 APGGMTMHRAQGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|118367230|ref|XP_001016830.1| UvrD/REP helicase family protein [Tetrahymena thermophila]
 gi|89298597|gb|EAR96585.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210]
          Length = 829

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           K  Q    ++ DE QD + + ++++                   L  +GDE Q+IY F G
Sbjct: 155 KYFQSKKLVVFDEFQDINQLHYDILMLF---------KKVGNSVLVVLGDEAQNIYEFRG 205

Query: 232 AEPKRVLREKRIN----QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           +  K + +         +K   N        +L  +FR ++ I    + +  
Sbjct: 206 SNFKYLNQIVEDVNRENKKIYGNEDYNMLEFKLTTNFRCSSKITDFANDIIR 257


>gi|227501774|ref|ZP_03931823.1| superfamily I DNA/RNA helicase family protein [Corynebacterium
           accolens ATCC 49725]
 gi|227077799|gb|EEI15762.1| superfamily I DNA/RNA helicase family protein [Corynebacterium
           accolens ATCC 49725]
          Length = 435

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 28/138 (20%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAW---IRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           ++  LD +     T  LL + ++      I   + +    +++DEVQD + +   V++SL
Sbjct: 44  RSGHLDAD-----TARLLARTEIEENKYGIVELLAKRFEEVIVDEVQDCNSVDLLVLKSL 98

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                       +   L +VGD  QSIY F G     V    +                 
Sbjct: 99  ----------RDAGIRLISVGDLDQSIYEFRGTSAPEVSNFLQ----------STDPQPR 138

Query: 260 LPLSFRSTADILTVVDKV 277
           +  +FRS+  I  VV+ +
Sbjct: 139 IDTNFRSSPAICKVVNSL 156


>gi|229177574|ref|ZP_04304952.1| UvrD/REP helicase [Bacillus cereus 172560W]
 gi|228605936|gb|EEK63379.1| UvrD/REP helicase [Bacillus cereus 172560W]
          Length = 776

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 95/267 (35%), Gaps = 46/267 (17%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKETRVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +   + +   +R    T +    T     L     A +   KK       +D+   T ++
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTD--ASWVTEKKPKEW---DDICSLTINM 509

Query: 160 LKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L        
Sbjct: 510 LDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF------- 562

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   +  +GD  Q+I++ H +E         +     TN       I L  S+RST
Sbjct: 563 ----PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------INLTRSYRST 611

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTT 294
             I+     +    +N      D    
Sbjct: 612 KPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|159037949|ref|YP_001537202.1| hypothetical protein Sare_2353 [Salinispora arenicola CNS-205]
 gi|157916784|gb|ABV98211.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
          Length = 303

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 68/222 (30%), Gaps = 29/222 (13%)

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF--------NRGLII 786
            +    ++L    +        L+PS         L                   RG ++
Sbjct: 3   ADPVTTQQLPPTAEVPATLRASLSPSRAADFKTCPLLYRFRSIDRLPEQPSVEQARGTLV 62

Query: 787 HKLLQVIFTLPEHKRKNFI---------TSYCTKNAKLWPAKEYKNLLLSITRLLENP-- 835
           H +L+ +F LP   R                  +  +L           +    L +   
Sbjct: 63  HAVLERLFDLPPAGRTPTAAGDLVAPQWERLVAEQPELAALFAADAEARA--EFLRSATG 120

Query: 836 MMTTAMS-CDSYSEVSVSGK---INCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVP 890
           ++    +  D         +        ++++I G +D++ ++      + +YKT     
Sbjct: 121 LLRGYFAVEDPRRLEPAERESLISAVVDEELLIRGYLDRLDVAPDGALRVVDYKTGGAPR 180

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
           +  E      + QL  Y  +L  +      V  L+Y+ + +V
Sbjct: 181 EAFEARA---LFQLKFYALVLWRTRGVVPRVLRLLYLKDAEV 219


>gi|159045977|ref|YP_001534771.1| double-strand break repair helicase AddB [Dinoroseobacter shibae
           DFL 12]
 gi|157913737|gb|ABV95170.1| double-strand break repair helicase AddB [Dinoroseobacter shibae
           DFL 12]
          Length = 988

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 103/393 (26%), Gaps = 37/393 (9%)

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN-EVRIMTVHTA 580
           G +   VLD      L        +  +  + L +     +       +  + I     A
Sbjct: 526 GEKAKAVLDAL---ALEAAHGGSFASGDFAALLARMLAQEEVRDPVRPDPRIMIWGTLEA 582

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           +   + VV L      ++  +      +   +  + G+ +   Q     +     +   +
Sbjct: 583 RVQGADVVILAGLNDGIWPKRPDPDPWMNRKMRHEAGLLVPERQVGLSAHDFQQAMGARE 642

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
                       V +TRA             +E ++    W + + +         +  L
Sbjct: 643 ------------VILTRA----------TRDSEAETVPSRWLNRITNLLEGLSDESRAAL 680

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
                +   I             +   +    +    + P ++ S  + +          
Sbjct: 681 AGMRTRGAAIVTRARGLDRPAAVMPLAKRPSPIPAPGQFPPRI-SASRVETLIRDPFEIY 739

Query: 761 TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA-- 818
                G   L+ L        RG ++HK+L+   +      +   T      A++     
Sbjct: 740 CGTVLGLRPLDPLDRPADAALRGTVLHKVLETALSQVMAGTEMTATLLRQIAARVLDEHV 799

Query: 819 ---KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISIS 874
              +                           +  ++  +        + ++   D+I I+
Sbjct: 800 PWPEVRTQWRARFESYATQLAEAEVARLRRATPAALERRGELTLASGVRLTCEADRIDIA 859

Query: 875 QQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
                 I++YKT        E        QL +
Sbjct: 860 PDGTAIIYDYKTGTVPG---EKEVEAFTKQLHL 889


>gi|145594767|ref|YP_001159064.1| hypothetical protein Strop_2236 [Salinispora tropica CNB-440]
 gi|145304104|gb|ABP54686.1| hypothetical protein Strop_2236 [Salinispora tropica CNB-440]
          Length = 322

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 64/215 (29%), Gaps = 25/215 (11%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF--------NRGLIIHKLLQVIFTLPE 798
            +        L+PS         L                   RG ++H +L+ +F L  
Sbjct: 34  AEVPATVRASLSPSRAADFKTCPLLYRFRSIDRLPEQPTVEQARGTLVHAVLERLFDLSP 93

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-------RLLENP--MMTTAMS-CDSYSE 848
             R     S            E   L    T         L +   ++    +  D    
Sbjct: 94  AGRTPRAASDLVAPQWERLVAEQPELAALFTDDGEARSAFLRSAAGLLQGYFTVEDPRRL 153

Query: 849 VSVSGK---INCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQL 904
                +        ++++I G +D++ ++      + +YKT     +  E      + QL
Sbjct: 154 EPAERESLISAVVDEELLIRGYLDRLDVAPDGALRVVDYKTGGAPREAFEARA---LFQL 210

Query: 905 SIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNK 939
             Y  +L  +      V  L+Y+ + +V     + 
Sbjct: 211 KFYALVLWRTRGVVPRVLRLLYLKDAEVCDYTPDA 245


>gi|229114598|ref|ZP_04244012.1| UvrD/REP helicase [Bacillus cereus Rock1-3]
 gi|228668663|gb|EEL24091.1| UvrD/REP helicase [Bacillus cereus Rock1-3]
          Length = 777

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 36/217 (16%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAAKMTVLGDFNQAIFA-HASETVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  S+RST  I+      F+     +G + ++      + +       ++L + + S+
Sbjct: 602 INLTRSYRSTKPIIE-----FTRALVPEGKNINAFERDGEKPTVTKVANDIELHDCISSK 656

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
             ++   QQ +  +       ES+A+  A      I 
Sbjct: 657 V-AELQKQQHNTIAIICKSAVESAAAYEALNHIENIK 692


>gi|257063576|ref|YP_003143248.1| RecB family exonuclease [Slackia heliotrinireducens DSM 20476]
 gi|256791229|gb|ACV21899.1| RecB family exonuclease [Slackia heliotrinireducens DSM 20476]
          Length = 889

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/584 (11%), Positives = 147/584 (25%), Gaps = 76/584 (13%)

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRF-ILSQEDDLSFVCMLKSPLFNFSEDDIF 454
           L     I+     R    D    + +++L  F    +         L SP         F
Sbjct: 239 LLAAQGITCGVRARKRFFDTAFGRAIVSLYEFKSADECRPALLTDFLTSPFSGVGRRTAF 298

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
            +   R     +    +  A       Q           I            ++G+ +GR
Sbjct: 299 DLD-ARMRGNRLITKEECLARVLGESEQA-----RYCDEIVSDLDASILIGSLIGSMQGR 352

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
             +      E I          +   +     L   +  LE     + +A +     +  
Sbjct: 353 SDWSDACRVEQIAAAFAL-RRVMETARACGLDLPCAMMFLEFMYVNVSQATAEPPQVLFA 411

Query: 575 MTVHTAKGL--ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD----PGIPIWIPQSKSR 628
                +        VV   +  S  ++ K+                       + ++   
Sbjct: 412 TQQEASNYRPGSFDVVVATELDSVSYAVKNRTDSVTTLFEKLGIDSKDDALARVRRNFVA 471

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
              ++ +    +++  +E     Y  +     + I C         + N     D+    
Sbjct: 472 TENLARVQFVCERAMNDEDANPTYPCI--PLQEFIDCY--------RENPSATDDVDETY 521

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
               E +  ++        E  A++     P+           Q+ D  +    L    +
Sbjct: 522 GLPQELLATVRSKGEEALYENAAHDLQPQQPQVVVDRP--VAGQVSDGSRHLVVLPRIDR 579

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDN----------QTFNRGLIIHKLL-------- 790
             + E   L+PS I++  +   +                     G   H +L        
Sbjct: 580 TCVVETPCLSPSQIESYLECPHKWFAHRRLRLEGIDEGFGAVEMGDFAHAVLNDFYTVFM 639

Query: 791 -QVIFTLPEHKRKNFITSYCTKNAKL----------------------WPAKEYKNLLLS 827
            +    +    R   +                                    +   L   
Sbjct: 640 EEGHARVTADNRDRAVEVLAACFDGRRAIQAEPAHGRQRRNRLVATTSVEELQIDALKDK 699

Query: 828 ITRL-LENPMMTTAMSCDSYS-EVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYK 884
           + R  L    M           E+ ++  ++     + + GR+D++ I +     + +YK
Sbjct: 700 LVRFVLREANMLPDFHPHLLEYEIPIAQAVDYA--GVKVFGRVDRVDIDEAGRAVVIDYK 757

Query: 885 ---THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
              +  +       +      Q  IY ++L+  +    +   L 
Sbjct: 758 GSVSERYAAFGEGGVLANGKVQALIYAQLLRR-HLGLDVRGALY 800


>gi|114568639|ref|YP_755319.1| hypothetical protein Mmar10_0085 [Maricaulis maris MCS10]
 gi|114339101|gb|ABI64381.1| conserved hypothetical protein [Maricaulis maris MCS10]
          Length = 1016

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/558 (10%), Positives = 128/558 (22%), Gaps = 68/558 (12%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
            ++          + + +  +    L + +A   L  L    L     ++   +  SPLF
Sbjct: 378 RMLARRVSAEMTRFGVRLDDSGGAALAETMAGAFLTRLLDVALDCGRVVALTALWGSPLF 437

Query: 447 NFSEDDIFKIC----------TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
                                        +     +     +  F      I+ ++    
Sbjct: 438 RAGHRRGQTHTVLAKFEAEALRGARPGRDLAAVRARLDGQYVRLFDEDRATINAILDQLD 497

Query: 497 F-----------------CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
                              +  +    +     G        G           +    +
Sbjct: 498 TSLAGLLTPGKRSASAWARAHAEAAEALASDDSGSGAQAVWVGEGGEAAAGLLRSLLEES 557

Query: 540 EQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
           E     SL E  +   E             H  ++++    A+ + +  V L      V+
Sbjct: 558 ESLPDMSLPEYAAAFGEMCRSRRVAPRLGVHPRLQVLGPLEARLITADRVILAGLNEGVW 617

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                    + P +    G+     +     +  + L                 V MTR+
Sbjct: 618 PPGPGADPWLSPGMRRTVGLGAPERRYGLAAHDFAQLAAAPD------------VIMTRS 665

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
                          + S       +          +          + ++ A       
Sbjct: 666 ------------GKSEGSPTVASRWLWRLKTLARGALGAAAEAAFAPETDYAALSRRLDD 713

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
           P   P              +  +   + I+  + +PY +    +   G   L+       
Sbjct: 714 PGAPPRAAPRPQPAPPVPVRPRQMSITEIRTWVRDPYSIYARHV--LGLRRLDPADMPPD 771

Query: 779 TFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTKNAKLWPAK---------EYKNLLLSI 828
              RG  +H  L+  +    +   ++ +                       E      + 
Sbjct: 772 ARERGSALHDALEAVVPAWSDGIPEDAVKQLVAHAELKLAEAGFGPEEMVLERARFERAA 831

Query: 829 TRLLENPMMTTAMSCD-SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTH 886
           + L+       A        E+  S     P     ++GR D+          I +YKT 
Sbjct: 832 SWLVGWEAERRARGIHLDKVEIFGSMPFEGPAGPWTLTGRSDRFDRHPDGRLDIIDYKTG 891

Query: 887 HHVPQEIEHIPYTHIAQL 904
                  + I      QL
Sbjct: 892 --GSASAKSIKAGFDPQL 907


>gi|20091192|ref|NP_617267.1| hypothetical protein MA2359 [Methanosarcina acetivorans C2A]
 gi|19916303|gb|AAM05747.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 487

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 1/133 (0%)

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           M++H AKGLE  VVF+ +     F      +  ++P    +    ++     S   +   
Sbjct: 1   MSIHAAKGLEFRVVFVTNMAKDKFPLLRGGQDFLIPLEMMEQYRDLFSA-KLSEAELEKA 59

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
           + +  K+   EE  RL YV  TRA + LI+ +      +++       ++ YD + + + 
Sbjct: 60  IKERKKEIRFEEERRLCYVAFTRAKEDLILTRSQEYGGKEREPSEFLMEIGYDHWRDLDI 119

Query: 695 VKKIKLTNSINKD 707
             +     S+ K+
Sbjct: 120 AAEGGTAGSVEKE 132



 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 23/165 (13%)

Query: 761 TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
            +    +              +G  +HK+L+                   K A    A+ 
Sbjct: 255 ELQEILRMPSRKNADSTGAMTKGSFVHKVLET----------AVKERVAEKRALYEIAET 304

Query: 821 YKNLLLSITRLLEN--PMMTTAMSCDSYS---EVSVSGKINCPKKDIIISGRIDQISISQ 875
                  +   LE+  P+       +       + V    +      +  G ID+I +  
Sbjct: 305 LHKKPEWMYADLESTLPLFEVFWLRNKDRISNNLMVEKWFSVIIDGFVFKGIIDRIDLLD 364

Query: 876 ---QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              + + I +YKT  +     +  P     QL +Y K  +  YP 
Sbjct: 365 PSKKEVEIIDYKTGKY-----DVNPEDRSRQLLLYAKGFEHMYPG 404


>gi|241206970|ref|YP_002978066.1| double-strand break repair protein AddB [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240860860|gb|ACS58527.1| double-strand break repair protein AddB [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 1064

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 96/393 (24%), Gaps = 46/393 (11%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
               + NE  D L   L   +  +    +   + I  +            A +H  + I 
Sbjct: 584 LADLWSNEAGDALAALLGEVIDTDGQMEADGPQWIDIMAALAAGHAVKPRALSHPRLFIF 643

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+      + L       +  +      I   +  + G+     +     +     
Sbjct: 644 GTLEARLQSVDTLILGGLNEGTWPGQTANNPFIPRMMKTEIGLEPPERRIGQLAHDFE-- 701

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                              M   +  LI  +     +      R    ++       E  
Sbjct: 702 -------------------MANGTRHLIYSRALRQGSTPTVASRWLQRLLALGGEAFEAE 742

Query: 696 KKIKLTNSIN-KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            K +    +         +        +P        +     ++ +    P        
Sbjct: 743 LKGRGNRFLQWAALIDRGDAQAPAQRPSPKPPLALQPKSYSFSEVGRLRRDPYAIYARRV 802

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP----EHKRKNFITSYCT 810
             L+P          +E    D     RG + HK++                  + +  +
Sbjct: 803 LRLDP----------VEPFNRDPGAAERGTLYHKIIDRFIREAHIAGTPDAAAAMEAILS 852

Query: 811 KNAKL------WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
           +   +        A             LE           + +EV   G +     +I +
Sbjct: 853 ELFDMEKLPPHIDAVWRPRFRAVARAFLEWEAGRRHGILKTLTEVR--GGMELEPINIRL 910

Query: 865 SGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHI 896
           +G  D+I ++   +  I +YKT  +       +
Sbjct: 911 TGVADRIDVTGPHSADIIDYKTGFNPSPAQARV 943


>gi|291531718|emb|CBK97303.1| ATP-dependent nuclease, subunit B [Eubacterium siraeum 70/3]
          Length = 1132

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 84/777 (10%), Positives = 197/777 (25%), Gaps = 138/777 (17%)

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            DE  +IY             ++   +   + G  F ++ L     + A++    D+   
Sbjct: 192 FDENTTIYIDG---FDSFSGAQQNFLRALADKGVNF-VVALCTDG-NKAEVFATCDRT-E 245

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                    +   T +  ++ R        L   + +              +Y  S+  E
Sbjct: 246 RLFERGNREDIKHTRLCGKAPRYKNGNLKALRNFLQTGVKDSTAGSDGITMAYSSSVSGE 305

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                 A  +   I  ++ ++           +  DI V+                    
Sbjct: 306 ------ADFVCANIRKLVRSE---------GYRYSDIAVICAS---PAKYKDAVNSAAAR 347

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS---------- 449
           Y + V  +    +++   ++   AL +   +     + +  ++S                
Sbjct: 348 YDVPVFADLPVPISEKPMLRFFEALLKAADNPT-GTNILRYIRSGFVRLPSEKNNGKTVP 406

Query: 450 ---EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
              ++          E    ++  +K  +  +    +  +   E I IA      +F   
Sbjct: 407 MTLKERHLVEQHLMEEYAECWDLKRKKWDKPMPHITNASEQRVEEIRIATVTPLVEFAKS 466

Query: 507 ILGAKKGRQ-------------------------------QFISRFGNEV---IDVLDEF 532
           +     GR+                               +++     E       + E 
Sbjct: 467 V-RGIGGRELVKKFTAFLFDKVDISAAIQGKCQDNSTRELRYVKELTEEYNQLWRTVSEM 525

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLV 591
           L        ++  +L E  + +      I  + + N  + V        +  E   VF++
Sbjct: 526 LTSLYETLDDTPLTLAEFSALIHSCASRISISRTPNVLDSVLFGDPARTRSREVKAVFVM 585

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                 F   + +   +  S +        I          S ++   K  T       L
Sbjct: 586 GAADGAFPDIYPEGNSVFTSDDVQRLAENDIELENDEARYSSAVLDAYKAMTLAGEK--L 643

Query: 652 YVGMTRASDQL--IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           ++  T   +     I   +     K  N      +           + +   + +   + 
Sbjct: 644 FITFTGEKENASEYIADIAKHFGAKLINVDNLDALYMTESVKSAEKQYVINNSRLTDGQK 703

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPSTIDTKGKT 768
            A E      E            + +          S I   +     L+P+ I+     
Sbjct: 704 KAVEAVLSENEKESSSIGRIKAVMSNNSGNSDIHRISDIAPIVFPQTALSPTAIEKLNGC 763

Query: 769 NLE------SLLSDNQTFN-----RGLIIHKLL----QVI---------FTLPEHKRKNF 804
                      LS +          G I+H ++    + +           + + + K+ 
Sbjct: 764 KFAYFLRYGMNLSSSAGIAMNASNYGNIMHYIMKYCFENMYDGARENGNPHVSDDRIKDL 823

Query: 805 ITSYCTKNAK--LWPAKEYKNLLLSITRLLENPMM------TTAMSCDSYSEVSVSGKIN 856
           I     +  +  L   +       ++   L              +    +       K+ 
Sbjct: 824 IEQALAEYREKYLLTEENMSARFNTLYNALSVTAFYLIKYMAQELEKSRFVPSYFELKLE 883

Query: 857 CPKKD---------------------IIISGRIDQISI------SQQNIFIFEYKTH 886
             K +                     I + G +D++ I      S   I + +YKT 
Sbjct: 884 SGKSENGFDISPYSFDIELADKSRQTITVGGTVDRVDIAYNDDKSGGQIRVIDYKTG 940


>gi|283768592|ref|ZP_06341504.1| hypothetical protein HMPREF9013_1064 [Bulleidia extructa W1219]
 gi|283104984|gb|EFC06356.1| hypothetical protein HMPREF9013_1064 [Bulleidia extructa W1219]
          Length = 858

 Score = 69.6 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 74/640 (11%), Positives = 168/640 (26%), Gaps = 93/640 (14%)

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
            +        +  S   +A  I   I  ++  +     G+         ++L       P
Sbjct: 156 DYFHPKIEFQESISDLRMALNIRQEI-EIMAQEICTFQGRVN-------IILSNYSSQFP 207

Query: 388 LITFLTRFLKNDYKISV----------VGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
               L + L   Y I            VG     L      ++  A    I +       
Sbjct: 208 ----LLKQLFQRYGIPFCAYSSKQNSLVGRIFKDLFLVSYEQNTEAFLDLIENNAFGDRL 263

Query: 438 VCMLKSPL-FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE-LIHIA 495
               +S L    S+ ++          ET++    +               I E L  + 
Sbjct: 264 PQETQSVLSKYLSKVEVKAPLLPLLTMETLWPKEAELYQQHQENIDTFYHTIQESLFLLL 323

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
           Q  S ++         +            +   L+ FLN             + +   LE
Sbjct: 324 QEGSLYEKIQRSYTVFRSLPFLKDPHEQTLAISLESFLNQI-----GDEIDRERIPFFLE 378

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                           + +  +     L++ V ++V      + +   K      S    
Sbjct: 379 LVSQFQSIQLPNQIGTIMVTDLRHPV-LQADVSYIVGLNGHTYPNVPSKSGIFNESYYAQ 437

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
              P +  +  +  + +S +    K+                    +           KK
Sbjct: 438 IPYPSYEERYHTYLSQLSWIFHSGKQ--------------------IHFSYSQKDYEGKK 477

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                    ++      ++ K++        ++ ++  +        P+ +         
Sbjct: 478 LEVSYDIQKLFSQKAQTKKAKELLPRKRNRHEDNLSSSFMESWFTQNPILK-------GS 530

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
              I +    P +  +N    L             E  + +  +   G I H LL+    
Sbjct: 531 VSSIEEWYRCPYQYFLNRLLKLK------------EQNVFEPNSLYIGTITHSLLEKALN 578

Query: 796 LPE----HKRKNFITSYCTKNAKLWP--AKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
             +          + S      +LW     +   ++  I   L + +           E 
Sbjct: 579 EKKKLYYELSLQDLQSQLDPYFQLWKVLDPDRLEMISLIKDKLASNLY---FCLQYLKEY 635

Query: 850 SVSGKINCPK-----------KDIIISGRIDQISIS--QQNIFIFEYKTHHHVPQEIEHI 896
             +     P              + + G+ID++      Q+ ++++YK+      +    
Sbjct: 636 EQNYDFLDPIASEQEFQIGLFDGLELVGKIDRLDQDQRNQDYYLYDYKSS-LHKMDKSKY 694

Query: 897 PYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIP 936
                 QL  Y+ +L+    +K +     +   P+   +P
Sbjct: 695 LSGQQIQLMTYKLVLEQ-SGDKKVRATYYFSLLPEKQHLP 733


>gi|124486139|ref|YP_001030755.1| methyltransferase type 11 [Methanocorpusculum labreanum Z]
 gi|124363680|gb|ABN07488.1| ATP-dependent nuclease subunit B-like protein [Methanocorpusculum
           labreanum Z]
          Length = 915

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/532 (10%), Positives = 139/532 (26%), Gaps = 64/532 (12%)

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +++SP F+  +D +     ++    T  E  +        +     K        A   S
Sbjct: 305 IIESPYFSLKKDWLTAGRLEKAGIITKTEKGRAAWRTVAERLAAARKKEIGEHDAAFQAS 364

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
                  +    +              D             Q          + L     
Sbjct: 365 LDRLLDRLDENLEHTGTLAGHCRALKAD----LSALGWTKIQMKPQDEAARHAFLRLLDK 420

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVF------LVDTGSQVFSHKHIKKMHIMPSLN 613
               + +     VR      ++  E                  + S    K+ ++  +  
Sbjct: 421 LALTSLAEVSYTVREFYAMLSRFCEKTTKISYPESKHAFFAGDLRSVAGTKRPYVFITGL 480

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL-LYVGMTRASDQLIICKHSNTSN 672
               IP         N   +  I+  +     + +R   +     A  QLI+    +   
Sbjct: 481 SADRIPRIEAAIPLLNAQETARIQPDRVQNLLDASRYYFHAAGLAAEKQLILSCAGHDGE 540

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
           +  +       +      +   +      N     E +A            +   ET  +
Sbjct: 541 KSLTPSPYLTRLAEPEPKSPGFLAHSMTANQTRAGELLAAGRENECEGLFGIPSLETAAE 600

Query: 733 LM--------------DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
           ++              D +     +         E     P+ ++   +   +  L+D+ 
Sbjct: 601 IIGIETVDRTGTPGIYDAEFAGDGIAEAFAAAYTEKTEFAPTVLERYRECPFKWYLADHL 660

Query: 779 TFN-----------RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN---- 823
                          G ++HK ++  F            S   +  K    +E+KN    
Sbjct: 661 RLENPADFSAERIIVGTVMHKAMERFFREYMSPLTEENESDAAEFLKKLVTEEFKNRHIK 720

Query: 824 ---LLLSITRLLENPMMTT-----------AMSCDSYS-----EVSVSGKINCPKKDIII 864
                  +   L N  + +             +    +     E  V+ +I        +
Sbjct: 721 TPSWQSMLNGYLGNGGLESSCDLIIRLETGFYAAGFRTLPEWLEQKVTAEIP-GGDPFTV 779

Query: 865 SGRIDQISISQ--QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
           +G +D++  ++  +   + +YKT +   +  + +      Q+ +Y + ++  
Sbjct: 780 TGWVDRVMFNEQTKEFAVVDYKTGNV--KTWKELEEGSALQIPLYTEAVRQM 829


>gi|238064528|ref|ZP_04609237.1| hypothetical protein MCAG_05494 [Micromonospora sp. ATCC 39149]
 gi|237886339|gb|EEP75167.1| hypothetical protein MCAG_05494 [Micromonospora sp. ATCC 39149]
          Length = 305

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 28/241 (11%)

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN--------RGLI 785
            +     ++  +  K        L+PS         L                   RG +
Sbjct: 3   AEPVIDQQQSRATAKVPATVRASLSPSRAADFKTCPLLYRFRSIDRLPERPSVEQVRGTL 62

Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR--------LLENP-- 835
           +H +L+ +F LP   R                  E   L               L +   
Sbjct: 63  VHAVLERLFDLPAAGRTPEAAGDLVAPQWDRLVAEQPELAALFDAGDPDGTAEFLRSAAG 122

Query: 836 MMTTAMS-CDSYSEVSVSGKI---NCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVP 890
           ++    +  D         +         +++I G +D++ ++      + +YKT     
Sbjct: 123 LLEGYFAVEDPRRLEPAEREALISAVVDDELLIRGYLDRLDVAPDGALRVVDYKTGGAPR 182

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
           +  E      + QL  Y  +L  +      V  L+Y+ + +V     +   +  A     
Sbjct: 183 EAFEARA---LFQLKFYALVLWRTRGVVPRVLRLLYLKDAEVCDYTPD--AEELARFERT 237

Query: 951 I 951
           +
Sbjct: 238 V 238


>gi|154149234|ref|YP_001406941.1| hypothetical protein CHAB381_1392 [Campylobacter hominis ATCC
           BAA-381]
 gi|153805243|gb|ABS52250.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 803

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 71/582 (12%), Positives = 184/582 (31%), Gaps = 83/582 (14%)

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRV--IQAKDILVLVRKRKDTPLITFL---TRFLKNDY 400
           A      I  +  +     N K     ++       +R  +   +   +    +   N  
Sbjct: 206 ADFDNEKIYELNLSKKKIENVKSAPQNLKVSLRAFSLRSLQCAFVFEKISSFIQAGINPK 265

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            I+V+      L D    + L+A  + + ++  + +      S  F      I +  T  
Sbjct: 266 NIAVI------LPDEDFAEILIAHDKALANRMLNFAMGEKFSSSAF----FQILEKFTNL 315

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYI------HELIHIAQFCSPHDFFTLILGAKKGR 514
            +     +   +             K +         +     C+  + F  I+      
Sbjct: 316 AKNGIFIDLKDQDNTQWSENTVFFQKNLIDADLYENFMKNFGMCANFEVFKEIILQ---- 371

Query: 515 QQFISRFGNEVIDVLDE-FLNFTLRNEQNSYSSL-QELISELEQYPPTIKRAHSANHNEV 572
              I+        +L E     ++  ++N  ++L    + E+     +  +    +  EV
Sbjct: 372 ---IAENTKNADKILAEPLFEISILMQKNKSANLTFGNLCEILLSLLSEIKIDDVSGGEV 428

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            ++ +  ++G++   V ++D    +   +   +M +   +    G+     +   +    
Sbjct: 429 SVLGILESRGMKFDGVIIIDFNDDLIPKRVSAEMFLSSKVRAKAGLIGHEDRENLQRFYY 488

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
             LIK+ KK                     +   +    ++        +D++ D+ ++D
Sbjct: 489 ESLIKNAKK---------------------VAISYQENEDKIVFRFAKKFDIIDDTDYSD 527

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           E    +          +   +      ++   +   +  +L       +K +     +I 
Sbjct: 528 EAYLHVFANRKNK--IFSFLQNDDPVCKSKLFDDALSFSKLDVFLSCKRKYYYAYLANIK 585

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
           EP  L                 +     ++G +IH++LQ I+       +       T+ 
Sbjct: 586 EPKKL----------------ETQLDFASKGSLIHEVLQKIYNDFGTFNEQKFAEVYTQI 629

Query: 813 AK--LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
           +K  +    E +     I ++  + + T  +      E +   ++      + I G+ID+
Sbjct: 630 SKKYIISDFERELSFYRIKKV-NDEIFTDFLKQGFNFEAA-EKQMETEFCGVKIKGKIDR 687

Query: 871 ISISQQNIFIF-EYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           I  ++    +  +YK+ +   +           QL+ Y+ +L
Sbjct: 688 IDKNKNGETLLNDYKSGNVNDKSY---------QLAFYKALL 720


>gi|190889667|ref|YP_001976209.1| hypothetical protein RHECIAT_CH0000028 [Rhizobium etli CIAT 652]
 gi|190694946|gb|ACE89031.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 1064

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/400 (11%), Positives = 94/400 (23%), Gaps = 48/400 (12%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
               + NE  D L   L   +  + Q      Q +            +  + +H  + I 
Sbjct: 584 LADLWSNEAGDALASLLGEVIDTDGQMEADGPQWIDITAALAAGHAVKPRALSHPRLFIF 643

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+      + L       +  +      I   +  + G+     +     +     
Sbjct: 644 GTLEARLQSVDTLILGGLNEGSWPGQSANNPFIPRMMKTEIGLEPPERRIGQLAHDFE-- 701

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                              M   +  LI  +     +      R    ++       E  
Sbjct: 702 -------------------MANGTRHLIYSRALRQGSTPTVASRWLQRLLALGGEAFEAE 742

Query: 696 KKIKLTNSIN-KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            K +    +                  +P        Q     ++ +    P        
Sbjct: 743 LKGRGARFLQWAGLVDRGGTQAPAQRPSPKPPLALQPQSYSFSEVGRLRRDPYAIYARRI 802

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP----EHKRKNFITSYC- 809
             L+P          +++   D     RG + HK++             +    +     
Sbjct: 803 LRLDP----------IDAFNRDPGAAERGTLYHKIIDRFIRAAHVAGTPEAAAAMELILT 852

Query: 810 -----TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                 K      A             LE           + +EV   G +     +I +
Sbjct: 853 ELFDMEKLPPHIDAVWRPRFREVARAFLEWEAGRRPAIRRTLTEVR--GGVELETINIRL 910

Query: 865 SGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
           +G  D+I I+      I +YKT ++              Q
Sbjct: 911 NGVADRIDITGPNAADIIDYKTGYNP--SPAQARALLDPQ 948


>gi|56698683|ref|YP_169060.1| hypothetical protein SPO3872 [Ruegeria pomeroyi DSS-3]
 gi|56680420|gb|AAV97086.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 975

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 74/663 (11%), Positives = 177/663 (26%), Gaps = 59/663 (8%)

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
                +  +      ++  S       +        ++      +        +     +
Sbjct: 258 RFARLMARLNLTPDQIAPWSDDVAPCPARNRLVSLALRPAPVTDAWMSEGPQLEGIDTAT 317

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK-RVIQAKDILVLVRKRK------ 384
              +L + +S    A  IA  +          +     R++  +    L R         
Sbjct: 318 RDITLIEAASPRDEALAIALRLRQAAEDGQSAALITPDRMLTRQVSAALDRWNILPDDSA 377

Query: 385 ----DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
                        R +   +   + G     +  H            +L   D    +  
Sbjct: 378 GLPLHLSPPGRFLRHVAALFSARLDGEALLSVLKHPLCHTGEGRNEHLLHTRDLELDLRR 437

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
              P     +   F    +  E  T +                +I ++  L  +A+  S 
Sbjct: 438 NGPPFPGVGDLAAFATRREVPEGWTNWVARCFCDQHVTGTLP-LIDWVDRLRQLAEALSA 496

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
                           +  + G E + ++    +      +       +L+  L      
Sbjct: 497 G-------TEGGTGSLWEQKAGQEALAIVTALADEAPHGGEMDARDFADLLGGL--LSTG 547

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
             R   A +  + I     A+ + + ++ L       +         +   +  D G+ +
Sbjct: 548 EVRDRDAPYPGIMIWGTLEARVMGAELLILGGLNEGSWPESPAPDPWLNRRMRHDAGLLL 607

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
              +     +     I   +            V +TRA            S++ ++    
Sbjct: 608 PERRIGLSAHDFQQAIGAPE------------VWLTRAKR----------SDDAETVPSR 645

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
           W + + +              + +          +    E                   P
Sbjct: 646 WLNRLTNLLQGLPDQGGAAALSEMRARGRRWLSMAEALEEAPRSAPAPRPSPRPPLAARP 705

Query: 741 KKLF-SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
           ++L  + IK  I +PY +    +       L+ L+       RG++IH++L+        
Sbjct: 706 RQLSVTEIKKLIRDPYAIYARHV--LRLKPLDPLVQAPDALLRGIVIHEILESFVRDSVL 763

Query: 800 K-----RKNFITSYCT-KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
                 R  F+    T     +         L  + R+ +  +++          ++   
Sbjct: 764 DMALLNRDTFLKRAATMLEELVAWPTARALWLARLDRVADAFLLSEEARRADAGPIAFEA 823

Query: 854 KI--NCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
           ++       D  ++GR D+I  ++  ++ +++YKT        E        QL I E  
Sbjct: 824 RMRKQLDGLDFTLTGRADRIDRTERGSLCLYDYKTGAPPS---EKQQAKFDRQLLI-EAA 879

Query: 911 LKD 913
           L +
Sbjct: 880 LAE 882


>gi|331005824|ref|ZP_08329180.1| hypothetical protein IMCC1989_2485 [gamma proteobacterium IMCC1989]
 gi|330420363|gb|EGG94673.1| hypothetical protein IMCC1989_2485 [gamma proteobacterium IMCC1989]
          Length = 586

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/534 (11%), Positives = 136/534 (25%), Gaps = 108/534 (20%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +D++     +L         +  +  +   +LIDE QDT         +L +        
Sbjct: 152 DDVVALMARMLSYP----KFQKLLKSKFPIVLIDEYQDTD-------SNLADSIVANLID 200

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
           ++S   +   GD  Q IY                     ++   K   I    +FRS  +
Sbjct: 201 NNSGVMVGLFGDHWQKIYGSSA-------------CGLISSKKGKIIEIGKKANFRSDRN 247

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+  ++++                 +    S     GT++++         +       W
Sbjct: 248 IVQCLNRM--------------RPDLPQAESDPSSDGTIKVFHSNNWSGVRRDGKSGGHW 293

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                                  +   I             +  +   +L          
Sbjct: 294 KDDLPESN---------------VKEYIEKTKGLMCVDGWDMSPEKTKILFLTNNLIAN- 337

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
               + L +         D ++  +   ++  + +        +   +  +L+       
Sbjct: 338 EQNFKNLAD----CFRYTDDYLKKNDKYVQFFLEVIEPTAFSYEQYQYGELLQIKKR--- 390

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
                       + +   +  +                I +++++          + I  
Sbjct: 391 ---------NHPQLKCQADKTEWLNILDRVMHARANSTIGDMLNLLMETKIPRMSSKIEE 441

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
           ++K   Q +S+  +E  +   +F+    R            +  LE              
Sbjct: 442 SEKRYNQLVSKPIDEQEEDEAKFVKKLSR---------LRFVEYLELVNLGEYID----- 487

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
            +    T H  KG +   V +V  G     +   + +  M                    
Sbjct: 488 EKTPFSTKHGVKGAQFDNVLVV-CGRGWNQYNWNQMLEWMDGS----------------- 529

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                     K+ T E    L YV  +RA   L +      S +  +     +D
Sbjct: 530 ------YPKDKQDTFERNRNLFYVSCSRAKHNLTLLFTQELSAKSITVLNRMFD 577


>gi|227503632|ref|ZP_03933681.1| RecB family exonuclease [Corynebacterium accolens ATCC 49725]
 gi|306836102|ref|ZP_07469089.1| exodeoxyribonuclease V beta subunit [Corynebacterium accolens ATCC
           49726]
 gi|227075668|gb|EEI13631.1| RecB family exonuclease [Corynebacterium accolens ATCC 49725]
 gi|304568020|gb|EFM43598.1| exodeoxyribonuclease V beta subunit [Corynebacterium accolens ATCC
           49726]
          Length = 273

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 58/204 (28%), Gaps = 29/204 (14%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLPE 798
             +    P  L+PS      +  L                   +G ++H +L+    LP 
Sbjct: 2   ATSSTPRPLALSPSRASDYQQCPLLYRFRAIDKIPEPKTIAQVKGTLVHAVLEETHKLPR 61

Query: 799 HKRK-NFITSYCTKNAKLWPAKEYKNLLLSITR------LLENPMMTTAMS-------CD 844
            +R           +      K+ + L L          +    ++              
Sbjct: 62  EERTYPAAVKMIKPSWAAMTEKDAELLELVPEEETYDFFVAARELLKGYFQMENPQGFDC 121

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
             +E+ V+  +      + + G ID++  +    + + +YKT         H       Q
Sbjct: 122 QETEMYVNTVLP---NGVPVRGFIDRVDRAPTGEVRVVDYKTGKKPAPRFSHSA---QFQ 175

Query: 904 LSIYEKILKDSYPNKSLVCLLIYV 927
           +  Y  +             L+Y+
Sbjct: 176 MRFYALVYWRLLGTIPHQLRLMYL 199


>gi|228899722|ref|ZP_04063970.1| UvrD/REP helicase [Bacillus thuringiensis IBL 4222]
 gi|228859904|gb|EEN04316.1| UvrD/REP helicase [Bacillus thuringiensis IBL 4222]
          Length = 778

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAAKMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|119508905|ref|ZP_01628057.1| putative DNA helicase [Nodularia spumigena CCY9414]
 gi|119466434|gb|EAW47319.1| putative DNA helicase [Nodularia spumigena CCY9414]
          Length = 711

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 28/174 (16%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                    T +  + +         +   Y    ++  + +  D + +   +++ + ++
Sbjct: 391 LKDYLRASRTGRGTRLSRQQRQAIWIVFEEYRNLLRERGLREPNDAMRDAIQIIRTKGIA 450

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
           A            +++DE QD S + +E++R++             P  LF VGD  Q I
Sbjct: 451 AL-------PYQAVIVDEAQDMSKVAFELLRAIAGTA--------KPNDLFIVGDAHQRI 495

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           Y              +           +    +L L++R+T +I      + + 
Sbjct: 496 YG-------------QTVTLSHCEIDIRGRSKKLRLNYRTTDEIRKWATAILAN 536


>gi|145522199|ref|XP_001446949.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414438|emb|CAK79552.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2623

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 21/166 (12%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ-EINHILIDEVQDTSLIQ 192
             HYE+ K +    DF D++           +   +  K     I++++IDE QD     
Sbjct: 747 YVHYEKWKIQQGYYDFMDVV--------NHILVQLVCGKCHLIPIHYLMIDECQDLPHAV 798

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++  +TE            + LF  GD  Q+I    G   + +    R  +       
Sbjct: 799 LLLLCKITE------------QGLFFSGDTAQNIAKGVGFRFQDLKSLFRKPEITYNAKQ 846

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
               I +L ++FRS  +IL + + + S+ E     + D     R  
Sbjct: 847 NDLKIHQLTINFRSHNNILQLANCLVSLLEIFFPNTIDKLKKERSN 892


>gi|223039063|ref|ZP_03609354.1| conserved hypothetical protein [Campylobacter rectus RM3267]
 gi|222879702|gb|EEF14792.1| conserved hypothetical protein [Campylobacter rectus RM3267]
          Length = 863

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/432 (11%), Positives = 122/432 (28%), Gaps = 73/432 (16%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              ++ +M V  ++GL+   V ++D    +   + + +M +   +    G+  ++ +   
Sbjct: 426 GGGKIGVMGVLESRGLKFEGVIVLDFNDDLVPKRSVNEMFLSSRVRQKAGLIGYVDRENL 485

Query: 628 RNNIVSDLIKHLKKSTQ----EEYN-------RLLYVGMTRASDQLIICKHSNTSNEKKS 676
           +      LI   KK+       E             V   R SD+      +   + K  
Sbjct: 486 QRFYYESLIGGAKKAAICYAANEEKIASRFLGEFNAVEDARFSDESYAALFNGEFDAKTG 545

Query: 677 NQRTWYDMVYDSFHNDERVKK------------IKLTNSINKDEWIAYEWSTHHPENTPL 724
                      + H DE+ +             +   +   + +  A          T  
Sbjct: 546 FADEQKFEAEMNPHLDEKNEAKSGQAKTAKERSLFEFDVQGELDSGANLVGKFDENATQN 605

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPY--------ILNPSTIDTKGKTNL------ 770
           +      + ++  K  +K  +  K    +           L+ S ++T  +         
Sbjct: 606 KTPSQNPRALNFIKFTRKTPAKPKIFEQDIIVKHDFFAIPLSFSRLNTYLQCPRRYYYRY 665

Query: 771 ------ESLLSDNQTFNRGLIIHK-LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                   +       + G  +H+ L +                   K   +        
Sbjct: 666 ILGVKPPVMPQTASAADFGNSLHRALFEYYSKFERFD--------LAKFETVLRELNMPP 717

Query: 824 LLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI 880
           L   I  ++E               +    +  +++     + I+G+ID+I      + +
Sbjct: 718 LEREI-TMIEMEKFKAVEDARYEAGWRVHGLEKELDSVFAGVRITGKIDRIDGRGGELAV 776

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK-VF--IIPQ 937
            +YK+     +           QL  YE ++      +        + +   +       
Sbjct: 777 IDYKSGKFDAKS---------LQLPFYEALV-----GRPCEGYFYDLKDNMNLVAGEAST 822

Query: 938 NKLNKAFAEIST 949
             L +A  ++ +
Sbjct: 823 EALAEAIEQLKS 834


>gi|118476652|ref|YP_893803.1| ATP-dependent DNA helicase UvrD [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415877|gb|ABK84296.1| ATP-dependent DNA helicase UvrD [Bacillus thuringiensis str. Al
           Hakam]
          Length = 776

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALLPEGKNIHAFERDGEKP 638


>gi|196044297|ref|ZP_03111533.1| helicase, UvrD/Rep family [Bacillus cereus 03BB108]
 gi|229183350|ref|ZP_04310578.1| UvrD/REP helicase [Bacillus cereus BGSC 6E1]
 gi|196024936|gb|EDX63607.1| helicase, UvrD/Rep family [Bacillus cereus 03BB108]
 gi|228600134|gb|EEK57726.1| UvrD/REP helicase [Bacillus cereus BGSC 6E1]
          Length = 776

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALLPEGKNIHAFERDGEKP 638


>gi|206976553|ref|ZP_03237459.1| helicase, UvrD/Rep family [Bacillus cereus H3081.97]
 gi|206745236|gb|EDZ56637.1| helicase, UvrD/Rep family [Bacillus cereus H3081.97]
          Length = 777

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|218235222|ref|YP_002365808.1| helicase, UvrD/Rep family [Bacillus cereus B4264]
 gi|218163179|gb|ACK63171.1| helicase, UvrD/Rep family [Bacillus cereus B4264]
          Length = 777

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 99/270 (36%), Gaps = 52/270 (19%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKEAKVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKST---LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +   + +   +R    T +    T       T A ++    E+ K+      ++D+   T
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTDASWVTG--EKPKE------WDDICSLT 506

Query: 157 NDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L     
Sbjct: 507 VNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF---- 562

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +  +GD  Q+I++ H +E         +     TN       I L  S+
Sbjct: 563 -------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------INLTRSY 608

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           RST  I+     +    +N      D    
Sbjct: 609 RSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|103485654|ref|YP_615215.1| helicase [Sphingopyxis alaskensis RB2256]
 gi|98975731|gb|ABF51882.1| helicase [Sphingopyxis alaskensis RB2256]
          Length = 991

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/353 (9%), Positives = 89/353 (25%), Gaps = 35/353 (9%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +       R     H  + I  +  A+   + ++ L       +         + P +  
Sbjct: 569 QLLGEASVRPPYGGHPRLFIWGLLEARLQRADLMILGGLDEGRWPAATQPDPWLAPGIRR 628

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G+P    Q     +  +  +   +                     +++ +   +  + 
Sbjct: 629 LIGLPATERQQGMAAHDFAGALGAGE---------------------IVVTRALRSGGDP 667

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
               R W  +   +    +          +     +  +      +  P    +   + +
Sbjct: 668 AVASRFWLRLAALAGDLPQPALDGVPLTDLAARIDLPADDIEPAGKPCPAPPADRRPRRI 727

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
               + +    P     N+   L+P          L  L +      RG  +H L +   
Sbjct: 728 SVTAVDRLARDPFAYYANQILGLSP----------LAPLSAAPDPRWRGTRVHALFERWV 777

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
               +           ++     A      L  I   L        +  +  + +     
Sbjct: 778 RAGANAAAFEAELAALRDDPALDAIARAFWLPRIEPALRWAA-RQLIEAEGRTALRAEAW 836

Query: 855 INCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
                  I ++G+ D++       + I +YKT      +          QL +
Sbjct: 837 GEIALDGITLTGKADRVDRLRDGRLAIVDYKTGGAPNAKAA--FDKLDNQLGL 887


>gi|89894432|ref|YP_517919.1| hypothetical protein DSY1686 [Desulfitobacterium hafniense Y51]
 gi|122483027|sp|Q24WW7|ADDB_DESHY RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|89333880|dbj|BAE83475.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1220

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 80/728 (10%), Positives = 192/728 (26%), Gaps = 143/728 (19%)

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR--RIAYTISN 355
            + R  + G   L     +          +S       +    +A+  A    +A  +  
Sbjct: 276 ETHRFEKAGLKHLERFYNAYPTQTFPGGDDSTAPDPLGIALFPAANKRAEVEGVARELRR 335

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           +   +             +D  V+ R   D P    +   + N ++I    + +  +  H
Sbjct: 336 LAREEGR---------TWRDCSVVTR---DLPGYQGIIEQVFNAHEIPYFLDHKRPVIHH 383

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI---CTQRHETETVYEYIQK 472
             ++ L++    +            LK+  F  S+D I ++   C       + ++  + 
Sbjct: 384 PLLELLLSAIETVQKDWAYEPLFRCLKTDFFPCSKDRIDRLENYCLAYGIHGSAWKGNRS 443

Query: 473 FANCGISKFQHVIKYIHELIHIAQFC----------------------SPHDFFTLILGA 510
           ++       +     ++E   I                             +    +L  
Sbjct: 444 WSYYPDPNHKEETAGLNETRQIIYDLFSPFDQAIRPHPEAGGPSVTVAQITEAIYELLIR 503

Query: 511 KKGRQQFI--------------SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
            K  +                 ++  N++ D + + L+  +         L +    L  
Sbjct: 504 LKVPEHLQEWAEAAHSRGDLAEAQLQNQIWDAVIQVLDELVAGLGEEVMDLSDFAMILTS 563

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
               ++        ++V + ++  ++  E+ V+FL+     +   K             D
Sbjct: 564 GLENLQLGLIPPGYDQVLVGSLDRSRNPETAVLFLLGANDGILPGKPS-----------D 612

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            G+   + + +  +  +  ++    K    E    +Y  +TRA +QL I         + 
Sbjct: 613 EGVFDELERLRLESKGI--MLAPKGKVQVYEEQYFIYTALTRAREQLYISYPLTDEEGRG 670

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                    +   F                           +      L +  ++  L  
Sbjct: 671 LTVSPVIHRLKMIFPGLPEKYLSLDEEEPGALPHPYALLPAYALHLQKLRQGSSLSPLWQ 730

Query: 736 EQKIPKKLFSPIKN--------------DINEPYIL-----------NPSTIDTKGKTNL 770
             ++     +                  +   P  L           + S ++   +   
Sbjct: 731 AIRLWFLSQTAAFPQVQLLEKGLRDQNEEGKLPQPLARQLYGKRLVTSVSRLELFARCPF 790

Query: 771 ESLLS-----------DNQTFNRGLIIHKLL-----------------------QVIFTL 796
                                + G   H +L                       Q++   
Sbjct: 791 AHFAQYGLKLKERSNYRLSPPDMGQFFHAVLHDYAIALRERGLDWGELSKEQSWQLVNET 850

Query: 797 PEHKRKNFITSYCTKNAKL-WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV------ 849
            E             NA+  +   + K  +    R+L               EV      
Sbjct: 851 AEPIALQLQNKILLSNARYRYLTHKLKRTVHHAVRVLGEHARQGVFLPMEL-EVKFGPQE 909

Query: 850 ---SVSGKINCPKKDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIA 902
               +   ++     +++ G+ID+I  ++    I+  IF+YK+       +  I +    
Sbjct: 910 ALPPLEVPLS-GGNSLLLRGQIDRIDGAVLGHEIYLRIFDYKS-REAHVSLNQIYHGLDL 967

Query: 903 QLSIYEKI 910
           QL  Y   
Sbjct: 968 QLLAYLDA 975


>gi|149912863|ref|ZP_01901397.1| hypothetical protein RAZWK3B_02705 [Roseobacter sp. AzwK-3b]
 gi|149813269|gb|EDM73095.1| hypothetical protein RAZWK3B_02705 [Roseobacter sp. AzwK-3b]
          Length = 978

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/469 (10%), Positives = 121/469 (25%), Gaps = 48/469 (10%)

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
            +  +  K  T       + +     A  G       ++   +L +              
Sbjct: 449 IAWGEAQKDTTAAPWARWISDCFCAKAVNGDLPLSEFVERHIDLANRIAQGPVDS----- 503

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
                  +    +   + +  L E  N         Y +L               R   A
Sbjct: 504 -SPHGLWRNDAGQEAWKCVSNLAEHANHGGEITAADYGTL-----FHAILSGGEVRNPDA 557

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
            H ++ I     A+   + ++ L       +         +  +L +  G+ +   +   
Sbjct: 558 PHPQILIWGTLEARVQGADLLILAGLNEGSWPEAPKPDPWLNRALRNQAGLLLPERRIGL 617

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
             +         +            V MTR+            S++ ++    W + + +
Sbjct: 618 SAHDFQQAASAPE------------VWMTRSIR----------SDDAETVPSRWLNRIRN 655

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-SP 746
                      +    +               E   +  E+           P++   + 
Sbjct: 656 LLAGLPDQGGAQALEDMKARGAHWLRLVASLEEPGYVPAEKRPSPCPPLAARPREFSVTE 715

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
           IK  I +PY +    +       L+ L+       RG ++H++L       +H       
Sbjct: 716 IKRLIRDPYAIYARHV--LRVRPLDPLMKVPDALLRGTVLHEVLDRFIKDSQHDETLCTR 773

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM--SCDSYSEVSVSGKIN------CP 858
            +     +   A+                 +            +++    +         
Sbjct: 774 DHLMAVTESVLAQNVPWAEARAIWRARMDRVADWFIDGEFDRRQIAQPCALEQSGIATLD 833

Query: 859 KKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
              + +  + D+I I    ++ I++YKT      + +        QL +
Sbjct: 834 DLGVTLKAKADRIDIDATGSLHIYDYKTGKPPSAKEQKYFDR---QLLL 879


>gi|228926186|ref|ZP_04089261.1| UvrD/REP helicase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228833439|gb|EEM79001.1| UvrD/REP helicase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 778

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 502 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 561

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 562 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 603

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 604 INLTRSYRSTKPIIEFTRALVPERKNIHAFERDGEKP 640


>gi|228919874|ref|ZP_04083230.1| UvrD/REP helicase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228839775|gb|EEM85060.1| UvrD/REP helicase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 778

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|229016341|ref|ZP_04173286.1| UvrD/REP helicase [Bacillus cereus AH1273]
 gi|229022582|ref|ZP_04179109.1| UvrD/REP helicase [Bacillus cereus AH1272]
 gi|228738709|gb|EEL89178.1| UvrD/REP helicase [Bacillus cereus AH1272]
 gi|228744933|gb|EEL94990.1| UvrD/REP helicase [Bacillus cereus AH1273]
          Length = 778

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I HIL+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHILVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNINAFERDGEKP 638


>gi|229171801|ref|ZP_04299373.1| UvrD/REP helicase [Bacillus cereus MM3]
 gi|228611698|gb|EEK68948.1| UvrD/REP helicase [Bacillus cereus MM3]
          Length = 776

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|329121402|ref|ZP_08250027.1| putative ATP-dependent deoxyribonuclease subunit B [Dialister
           micraerophilus DSM 19965]
 gi|327469692|gb|EGF15159.1| putative ATP-dependent deoxyribonuclease subunit B [Dialister
           micraerophilus DSM 19965]
          Length = 1138

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 85/711 (11%), Positives = 190/711 (26%), Gaps = 128/711 (18%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
           ++  T         +  S+    IA  I  ++           + ++ +DI VL+R    
Sbjct: 291 EKEETDGGIYPSSAADRSVEIDFIARKILTLVRD---------KKLRYRDITVLLRN--- 338

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI---LSQEDDLSFVCML- 441
             L T L   +   Y++ V  N +  + +H  I  +  L  F+    ++++      +L 
Sbjct: 339 PELYTDLIERIFKKYELPVFINKKDTMNNHPLIVSVTGLLEFLTAQANRKNSGYSRHILF 398

Query: 442 ----KSPLFNFSEDDIFKI-CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
                  L NF  + + K+           +++ +++    +    +    + E I  ++
Sbjct: 399 PILKTGLLKNFPPEKVNKLENYIIKNGIRFFQWDKEWNYRTVKDIDNPENELSE-IEKSE 457

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFG--NEVIDVLDE-FLNF----------TLRNEQNS 543
               +     +L      ++  +      E   +L E  ++            +  E+  
Sbjct: 458 NEEANSCRKKLLETLGNLEKEWNTNTSVKERCRILYEWLVSQNIPQILSERDKIEFEKTR 517

Query: 544 Y-SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               +Q     +      +  A      E   M V  +         + DT   + +   
Sbjct: 518 KKPHIQAWKKFISLLDELVNIAGEDTLPEEYFMNVLKSGLFNLSFATIPDTLDHITATSI 577

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS-------------TQEEYNR 649
            +  H+  +    PG+          N       +    +                E   
Sbjct: 578 SRGYHMESAAVFIPGMANGEFPKDIENTNFITEAERKHLAKENTLTLGNDFVFNIYEEQF 637

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             Y+ +TRA   + I      S  K       Y  +    +        + T       +
Sbjct: 638 YTYLALTRAKKYMYISYPKTDSENKPLEPSFIYKKIISLNYAHAEEIADRPTYDTKDMTF 697

Query: 710 IAYEWSTHHPENTPLER------------EETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
            +            L +            +    Q  +E               +    L
Sbjct: 698 FSNPKQAITLLPEILRQGIPEKNSCWTYLKNWATQSHNEYAELFYDQQKSFKYNSTASTL 757

Query: 758 NP-----------------STIDTKGKTNLESLL-------SDNQTF----NRGLIIHK- 788
           +                  S ++       +  L                 + G  +H  
Sbjct: 758 SQDIVNKLFKPYGKFYGSISQLEEYRSCPYKYFLNRGLKLSDRQDGRIQNIDFGNYLHSG 817

Query: 789 ------LLQVIFTLPEHKRKNFITSYCTKNAKLWPA-KEYKNLLLSITRLLENPMMTTAM 841
                 LL  +    +    + I ++  + + +      +  L    T    + ++    
Sbjct: 818 LKRFGNLLSSMNKTWKDLSDDEIDAFSNQISSIITPLVAHGTLTADATNAYTHRLLNMTF 877

Query: 842 SCDSYS---------------EVSVSGKINCPKKD-IIISGRIDQISISQQNIF------ 879
                                E      I    KD   + G+ID+I     +        
Sbjct: 878 KKSIKQFKNWSENSDFKTTDLEREFKINIKADDKDTFTLRGKIDRI----DSYTTETSQC 933

Query: 880 ---IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV-CLLIY 926
              + +YKT      +++ I      QL  Y   +    P K+++   L+Y
Sbjct: 934 ALAVCDYKTG-IQSIDLQSIISGIKLQLVTYMLAMIKENPEKNIIPTALMY 983


>gi|332045226|gb|EGI81419.1| hypothetical protein LacalDRAFT_0457 [Lacinutrix algicola 5H-3-7-4]
          Length = 917

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/433 (11%), Positives = 113/433 (26%), Gaps = 74/433 (17%)

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           +E           +  S        E                +++M +  ++ L+   V 
Sbjct: 464 NELYRLNGTYSHVNDIS-ALFSIYNELLSSETLDFQGEPLQGLQVMGMLESRVLDFENVI 522

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +      V          I   +  +  +P +  +          L++  K         
Sbjct: 523 ISSVNEGVLPSGKTNNSFIPFDVKLENNLPTYKEKDAVYTYHFYRLLQRAK--------- 573

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
                       L   +    +  +KS      ++          +              
Sbjct: 574 --------NIYILYNTEADILTGGEKSRFINQLELENIHQIKHNIIAP------------ 613

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                      +   E E+T   L   + +  + FSP          ++       G   
Sbjct: 614 -----KVPKINSKLKEIEKTQAVLNQIKTVANRGFSPSSLTNYIRNPIDFYYQSLLGVKE 668

Query: 770 LESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSY-----------CTKNAKLW 816
           LE +         G ++H  L+ +    L ++ +   I               ++     
Sbjct: 669 LEDVEETVAANTMGTVVHDTLETLYKPFLEKYIKVEDIERMKPLVDVTITHNFSRIYADG 728

Query: 817 PAKEYKNLL------LSITRLLENP--MMTT-----AMSCDSYSEVSVSGKINCPKKDII 863
              + KNL+        +   L      +        ++ ++ SE+++   I      + 
Sbjct: 729 DMTKGKNLIIFEIAKRYVENFLSLEIKDLKKGNTIKILALENRSEIAL--NIPELNFKVQ 786

Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQ-----EIEHIPYTHIA-----QLSIYEKILKD 913
           + G +D++        I +YKT           + E +   +       Q+  Y  ++  
Sbjct: 787 LRGTVDRVDEYNGLTRIIDYKTGKVESNQVAVIDWEDLTTDYKKYSKSFQILAYAYMMNK 846

Query: 914 SYP-NKSLVCLLI 925
             P N  +   +I
Sbjct: 847 EKPLNFPIEAGII 859


>gi|150017790|ref|YP_001310044.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
 gi|149904255|gb|ABR35088.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052]
          Length = 755

 Score = 69.2 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 29/134 (21%)

Query: 143 KNCVLDFEDLIINTND--LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           +  ++D +DL        LL+  D         +++  +I++DE QD S  Q  ++ S  
Sbjct: 497 EKNIIDEDDLPALAYIRILLEGIDE--------EEKFKYIIVDEAQDYSPFQVYLVNSFA 548

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                          L  VGD  Q IY + G      L+      K+        + I+L
Sbjct: 549 -----------KGNALTLVGDLAQGIYYYKG------LKTWEDITKQV--FEGNATYIQL 589

Query: 261 PLSFRSTADILTVV 274
             S+RST +I+   
Sbjct: 590 TQSYRSTVEIIDFA 603


>gi|256423224|ref|YP_003123877.1| hypothetical protein Cpin_4220 [Chitinophaga pinensis DSM 2588]
 gi|256038132|gb|ACU61676.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
          Length = 628

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 74/595 (12%), Positives = 163/595 (27%), Gaps = 110/595 (18%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA-HYEEA 140
           K+ + Q + +K   +++ +++      + + +      F        L   +N   YE  
Sbjct: 107 KDWVKQRVREKIAKIQQAIQEYGPRVQQ-KTKDKDQAEFLRLEEVSRLIDSVNNFRYETG 165

Query: 141 KK-KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
                 ++   D++    +L++ + +   I   + Q+   +LIDE QDT+        ++
Sbjct: 166 ADYTKGIIGHADILRMVPELIQGKTLLKKI---VIQKFPFLLIDESQDTAP-------NV 215

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIY-SFHGAEPKRVLREKRINQKRATNAGQKFSII 258
            E F        S   L   GD  Q IY +  G  P R                     I
Sbjct: 216 VECFLSVDAQKQSDFCLGFFGDPMQKIYLTGIGKIPDRDNW----------------KTI 259

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
             P +FR  + +L +++ +   P +    +      +    + +     + +      + 
Sbjct: 260 VKPENFRCASAVLELIN-LIRKPADQIEQTGGKMENVGGMLTPVVGSARLFILPANEERS 318

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV 378
            +                                + N I  +      +        ILV
Sbjct: 319 TN-----------------------------VEKVRNFIAREEQDPAWRDDSGSDLKILV 349

Query: 379 LVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           L  +     L          D          F   +  A+         ++  +      
Sbjct: 350 LEHRMAAKRLGFEQLHAAFKD-GTPESIGSGFSEGNSWALSLFQKYILPLIEAQSIGKQS 408

Query: 439 CMLK-----SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
            ++      SP+    ++ + K      + + + + I++           V + +     
Sbjct: 409 NVMTLLRAFSPI--LEKEYLQKHKISAEDLKVLDQTIKELVALFADPNISVAQIL----- 461

Query: 494 IAQFCSPHDFFT-LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
                   D      L     R     R    +I+  +       +  Q S + L     
Sbjct: 462 --------DLIETRRLAVLDERIAAKLRDEPLLIENAEAISRVLEKYFQCSVNQLLGYDK 513

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            + +      +              H  KG E   V ++    +       +        
Sbjct: 514 YIREESVYSTQ--------------HDVKGSEFKRVIVILDDEEGK-----RSTLYSYEK 554

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                           ++  ++ I    +S  +   RL YV  +RA   L +   
Sbjct: 555 LLGLKPL---------SDTDTENISEGTESVLDRTRRLFYVCCSRAQKDLAVIWF 600


>gi|74316052|ref|YP_313792.1| DNA helicase/exodeoxyribonuclease V subunit B [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055547|gb|AAZ95987.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
           25259]
          Length = 836

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/544 (9%), Positives = 133/544 (24%), Gaps = 59/544 (10%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                  R L     + V     + L+  +A   +      + S    +  + +LKSP  
Sbjct: 257 RETARRVRALLERLDVLVADETGWALSTTVAAAVVDRWLECVASDFPHVELLDLLKSPFV 316

Query: 447 NFSEDDIFK------ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCS 499
                          +  +R         I++ A          +  + +     A+  +
Sbjct: 317 LDDPAARQDQVLQLELALRRQRVAQGAADIERVARQEFGALPAWLASLFDARQRFARTSA 376

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVI--DVLDEFLNFTLRNEQNSYS-SLQELISELEQ 556
           P   +   L     +    +    +     VL+          Q+S      E    L  
Sbjct: 377 PLALWLQRLADSLDQLAARAPLEADAAGARVLETLAALGRDLAQDSEKYDFNEWRRWLGL 436

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
              +     +   + + + ++  A+G     + ++   ++         +    +     
Sbjct: 437 ALESASFVDAGVDSPIVLTSLPAARGRSFDAIAVIGADARHLPALPTPGLFSQATRRQLG 496

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                   + +  ++++ L +                          +      ++++ +
Sbjct: 497 LRTSADDAADAVTDLIALLGQGPA-----------------------LLSWRAWNDDEPN 533

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                   +             +                   P   P+     + +    
Sbjct: 534 PASPLVLRLQALHLAAWSSALPEQGIGEPPARASTLPGRCTRP--APVVPAARLPRRYSP 591

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
                 L  P                   G   L+         + G  +H++L+     
Sbjct: 592 TAYQTLLDCPYHFFARA----------VLGIRELDEADDALDKSDYGNALHRILKRFHDG 641

Query: 797 PEHKRKNFITSYCTKNAK------------LWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
                     +     A+             W +K        +   LE           
Sbjct: 642 DPPHDPAQALALLDACAEAEFAALPAYTAAAWRSKWSAIAPAYVDAWLEWA-GEGWRHAS 700

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           S SE +V+  +     ++ + GR+D++      + + +YKT      + +        QL
Sbjct: 701 SESEFAVAVAV-AGLGEVTLHGRVDRVDRRGDALAVIDYKTGSAQGLKKKLRMPDEAVQL 759

Query: 905 SIYE 908
             Y 
Sbjct: 760 PFYA 763


>gi|260590818|ref|ZP_05856276.1| UvrD/REP helicase family protein [Prevotella veroralis F0319]
 gi|260537304|gb|EEX19921.1| UvrD/REP helicase family protein [Prevotella veroralis F0319]
          Length = 502

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 65/213 (30%), Gaps = 38/213 (17%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY------LNAHYEEAKK 142
           +NK S    E++   + +    R  +   K     ++    A        +   Y E  K
Sbjct: 143 LNKSSEFFLEEISWIKGKLFNSRTEYLEAKRIGRGISDRVTASDKETIWSIYTMYSEELK 202

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
                DF+D  I +   ++            +    HI+IDE QD +  Q  VI  L   
Sbjct: 203 NRGKKDFDDYAIISLQKIENDSS-------WEPPFTHIIIDEAQDLNKAQILVISKLVSQ 255

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIY--SFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                +          + D  Q IY   F  +E    +R                  IE 
Sbjct: 256 ETESIS---------IIADAAQRIYKSGFTWSEVGLNVR--------------GGRTIEF 292

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
             ++R++  I      +    E+    +   T 
Sbjct: 293 KKNYRNSVHIARAALSLLENEEDKSEFTVVETA 325


>gi|229068701|ref|ZP_04201999.1| UvrD/REP helicase [Bacillus cereus F65185]
 gi|228714448|gb|EEL66325.1| UvrD/REP helicase [Bacillus cereus F65185]
          Length = 778

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 95/267 (35%), Gaps = 46/267 (17%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFH-DFEKETKVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +   + +   +R    T +    T     L     A +   KK       +D+   T ++
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTD--ASWVTEKKPKEW---DDICSLTVNM 509

Query: 160 LKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L        
Sbjct: 510 LDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF------- 562

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   +  +GD  Q+I++ H +E         +     TN       I L  S+RST
Sbjct: 563 ----PAARMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------INLTRSYRST 611

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTT 294
             I+     +    +N      D    
Sbjct: 612 KPIIEFTRTLVPEGKNIHAFERDGEKP 638


>gi|219668858|ref|YP_002459293.1| ATP-dependent nuclease subunit B [Desulfitobacterium hafniense
           DCB-2]
 gi|251764587|sp|B8FXD8|ADDB_DESHD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|219539118|gb|ACL20857.1| ATP-dependent nuclease subunit B [Desulfitobacterium hafniense
           DCB-2]
          Length = 1218

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 80/728 (10%), Positives = 192/728 (26%), Gaps = 143/728 (19%)

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR--RIAYTISN 355
            + R  + G   L     +          +S       +    +A+  A    +A  +  
Sbjct: 274 ETHRFEKAGLKHLERFYNAYPTQTFPGGDDSTAPDPLGIALFPAANKRAEVEGVARELRR 333

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
           +   +             +D  V+ R   D P    +   + N ++I    + +  +  H
Sbjct: 334 LAREEGR---------TWRDCSVVTR---DLPGYQGIIEQVFNAHEIPYFLDHKRPVIHH 381

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI---CTQRHETETVYEYIQK 472
             ++ L++    +            LK+  F  S+D I ++   C       + ++  + 
Sbjct: 382 PLLELLLSAIETVQKDWAYEPLFRCLKTDFFPCSKDRIDRLENYCLAYGIHGSAWKGNRS 441

Query: 473 FANCGISKFQHVIKYIHELIHIAQFC----------------------SPHDFFTLILGA 510
           ++       +     ++E   I                             +    +L  
Sbjct: 442 WSYYPDPNHKEETAGLNETRQIIYDLFSPFDQAIRPHPEAGGPSVTVAQITEAIYELLIR 501

Query: 511 KKGRQQFI--------------SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
            K  +                 ++  N++ D + + L+  +         L +    L  
Sbjct: 502 LKVPEHLQEWAEAAHSRGDLAEAQLQNQIWDAVIQVLDELVAGLGEEVMDLSDFAMILTS 561

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
               ++        ++V + ++  ++  E+ V+FL+     +   K             D
Sbjct: 562 GLENLQLGLIPPGYDQVLVGSLDRSRNPETAVLFLLGANDGILPGKPS-----------D 610

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            G+   + + +  +  +  ++    K    E    +Y  +TRA +QL I         + 
Sbjct: 611 EGVFDELERLRLESKGI--MLAPKGKVQVYEEQYFIYTALTRAREQLYISYPLTDEEGRG 668

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                    +   F                           +      L +  ++  L  
Sbjct: 669 LTVSPVIHRLKMIFPGLPEKYLSLDEEEPGALPHPYALLPAYALHLQKLRQGSSLSPLWQ 728

Query: 736 EQKIPKKLFSPIKN--------------DINEPYIL-----------NPSTIDTKGKTNL 770
             ++     +                  +   P  L           + S ++   +   
Sbjct: 729 AIRLWFLSQTAAFPQVQLLEKGLRDQNEEGKLPQPLARQLYGKRLVTSVSRLELFARCPF 788

Query: 771 ESLLS-----------DNQTFNRGLIIHKLL-----------------------QVIFTL 796
                                + G   H +L                       Q++   
Sbjct: 789 AHFAQYGLKLKERSNYRLSPPDMGQFFHAVLHDYAIALRERGLDWGELSKEQSWQLVNET 848

Query: 797 PEHKRKNFITSYCTKNAKL-WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV------ 849
            E             NA+  +   + K  +    R+L               EV      
Sbjct: 849 AEPIALQLQNKILLSNARYRYLTHKLKRTVHHAVRVLGEHARQGVFLPMEL-EVKFGPQE 907

Query: 850 ---SVSGKINCPKKDIIISGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIA 902
               +   ++     +++ G+ID+I  ++    I+  IF+YK+       +  I +    
Sbjct: 908 ALPPLEVPLS-GGNSLLLRGQIDRIDGAVLGHEIYLRIFDYKS-REAHVSLNQIYHGLDL 965

Query: 903 QLSIYEKI 910
           QL  Y   
Sbjct: 966 QLLAYLDA 973


>gi|84514937|ref|ZP_01002300.1| hypothetical protein SKA53_11973 [Loktanella vestfoldensis SKA53]
 gi|84511096|gb|EAQ07550.1| hypothetical protein SKA53_11973 [Loktanella vestfoldensis SKA53]
          Length = 974

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/395 (12%), Positives = 117/395 (29%), Gaps = 41/395 (10%)

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
           G E   +  +           S      L  ++      + R   A H ++ I     A+
Sbjct: 512 GREAQRICTDLRTHAGAGGVMSPRDYAALFGKI--LSAGVVRDRDAGHPQILIWGTLEAR 569

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
              + +  L      V+         +   +    G+ +   +     +     +   + 
Sbjct: 570 VQGADLTILGGMNDGVWPEAPAPDPWLNRMMRAQAGLLLPERRVGLSAHDYQQAVAGRE- 628

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
                      V +TRA            S++ ++    W + + +           +  
Sbjct: 629 -----------VWITRAKR----------SSDAETIPSRWLNRLTNLLGGLPDQNGPEAL 667

Query: 702 NSINK--DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
           + +      W+A       P     + +          +  +   + IK  I +PY +  
Sbjct: 668 DRMQARGAAWLAMAAKLSAPGADVAKVKRPAPCPPVAARPNRFSVTQIKTLIRDPYAIY- 726

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL-PEHKRKNFITSYCTKNA----- 813
                     L+ L        RG+IIH +L+            + + +  T++      
Sbjct: 727 -ARKVLRLDPLDPLTPSADAPLRGVIIHGILEEFVRQNHAPDDLDALLAIATRHFTEKCP 785

Query: 814 -KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
                A+      L+     +  +   A+S     E    GK+  P  ++ ++ + D+I 
Sbjct: 786 WPTHRAQWMARFALAADAFCKAEVGRHALSDTRLVEQ--EGKLLIPDVEVTLTCKADRID 843

Query: 873 ISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           ++      +++YKT     +  +        QL +
Sbjct: 844 LTPSGTAILYDYKTGTMPTKPQQEKFDK---QLLL 875


>gi|296332486|ref|ZP_06874947.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305673767|ref|YP_003865439.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296150404|gb|EFG91292.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412011|gb|ADM37130.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 1166

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 63/725 (8%), Positives = 191/725 (26%), Gaps = 156/725 (21%)

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR--IAYTISNMIGTDTIFSNGKKR 369
            ++              +    ++     +A+  A    IA  I  ++           +
Sbjct: 288 PELAHLEAQYEARPAIPYAEKQEAFTVMQAANRRAELEGIAREIHTLVRE---------K 338

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + KD+ +L R          + + +  DY+I    + +  + +H  I+ + +    + 
Sbjct: 339 GYRYKDVAILAR---QPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSIDVLK 395

Query: 430 SQEDDLSFVCMLKSPLF---------------------------NFSEDDIFKICTQRHE 462
                 +    +K+ L                                    +   +R  
Sbjct: 396 GNWRYEAVFRCVKTELLFPLNEPKTKVREQVDQLENYCIAYGIKGDRWTKGDRFHYRRFV 455

Query: 463 TETVYEYIQKFANCGISKFQHVIKYI--------HELIHIAQFCSPHDFFTLILGAKKGR 514
           +               +       +I          +          +     L      
Sbjct: 456 SLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQFQKRMKKAKTVQEKAEALYRYLEETDVP 515

Query: 515 QQF--------------ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
            +                ++   +  D + + L   +    +   SL      +E    +
Sbjct: 516 LKLDQERQRAEEDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDDEISLDLFQQMMEAGAES 575

Query: 561 IKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
           +  +      ++V +  +  ++   +   F++     V   +  +   +     +     
Sbjct: 576 LTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTI 635

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                S               +    + + L+Y+  +  SD+L +      +  K     
Sbjct: 636 GIELSSGG-------------RERLLDEHFLIYMAFSSPSDRLYVSYPIADAEGKTLLPS 682

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
                + + F   +          ++ +E + Y  +    ++    +     +  D   +
Sbjct: 683 IVIKRLEELFPQHKERLLTNEPEQVSDEEQLMYVVNKSVAQSFTASQLRLWTREYDISDV 742

Query: 740 PKKLFSPIKNDINEPYI------------------------------LNPSTIDTKGKTN 769
               ++ + ++ +                                   + S ++T     
Sbjct: 743 WWSTYNVLMSEPDRLQSKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETFNACP 802

Query: 770 L-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
                       E      +  + G + H  L++I      ++ N+      +  +L+  
Sbjct: 803 FSHFASHGLHLKERQFFKLEAPDIGQLFHSSLKLISDRLREQKMNW-RDLTKEQCELFSY 861

Query: 819 KEYKNLLLSITR--LLEN--------------PMMTTAMSCDSYSE--VSVSGKINCPKK 860
              + L   + +  LL +                ++  +S  + +   V +  ++    K
Sbjct: 862 DAVERLAPKLQKEILLSSNRHYYVKEKLQKIVTRVSGILSEHAKASGFVPIGLELGFGGK 921

Query: 861 DII--------------ISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIA 902
             +              + GRID++  ++ +    + I +YK+      ++  + Y    
Sbjct: 922 GPLPPLTFKLKNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS-DKGLDLAEVYYGLAL 980

Query: 903 QLSIY 907
           Q+  Y
Sbjct: 981 QMLTY 985


>gi|319898221|ref|YP_004158314.1| hypothetical protein BARCL_0035 [Bartonella clarridgeiae 73]
 gi|319402185|emb|CBI75716.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 1040

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/408 (12%), Positives = 112/408 (27%), Gaps = 45/408 (11%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIM 575
               + NE    L  FL   + ++      L E  +                 H  + I 
Sbjct: 567 LRHLYQNEAGTALATFLRELVSDQSGLKFRLHEWPALFSALIATRSVSPSPGGHPRLFIW 626

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               ++      V +       +             +       +  P   + N    + 
Sbjct: 627 GTLESRLQTVNTVVIGSLNEGSWP------------IKTHNDAFLSRPMKMTLNLEPPEH 674

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
              L     +    +  V M+RA+           ++      R    +         + 
Sbjct: 675 RIGLSAHDFQWAMGMDQVIMSRATR---------INHTPSVPSRWLQRLETVVGKQVWKQ 725

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENT-PLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            + +    ++  + +    S    E   P+   +   +     +I      P      + 
Sbjct: 726 IRTRGEILLHWAKMLDNTNSIVPAERPCPVPPLDIRPRHFSVTEIETLRHDPYAIYAKKI 785

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
             L P          L++L+ D  +  RG + H +L    T  +++    +        +
Sbjct: 786 LRLKP----------LKALIHDPCSTERGTLYHAILAAFCTQIKNQNATDMLDILMTIGR 835

Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAM--------SCDSYSEVSVSGKINCPKKDIIISG 866
               K      +     L        +        S + Y+EV ++      +  + +SG
Sbjct: 836 KEFDKLNLPPDIEAVWWLNFENFAPFLIQWEQSLGSRERYAEV-IAQHTLIGETGVTLSG 894

Query: 867 RIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           R D+I I     I I ++KT          +      QL++   +L  
Sbjct: 895 RADRIDILPNKTIEIIDFKTSIPPSST--QVINLFSPQLALEAALLMQ 940


>gi|85714149|ref|ZP_01045138.1| hypothetical protein NB311A_08333 [Nitrobacter sp. Nb-311A]
 gi|85699275|gb|EAQ37143.1| hypothetical protein NB311A_08333 [Nitrobacter sp. Nb-311A]
          Length = 1059

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 55/432 (12%), Positives = 107/432 (24%), Gaps = 69/432 (15%)

Query: 553  ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                +   + R        +RI     A+  +   V L      V+         +   +
Sbjct: 616  FEAAFGDRVVRRPQTTTASLRIYGPLEARLTQCDRVILGGLNEGVWPPAPPTDPWLSRPM 675

Query: 613  NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
              D G+ +   +     +  + L+                         +I+   +    
Sbjct: 676  RHDLGLDLPERRIGLSAHDFTQLLGAED---------------------VILSHAAKAGG 714

Query: 673  EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI-AYEWSTHHPENTPLEREETIK 731
                  R  + +   +               I   E +   +  T   +  P        
Sbjct: 715  SPAVASRFLHRLEAVAGATRWTAAIQAGARYIRYAEALDRPDQVTPVTKPEPKPPRAARP 774

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
              +    I   L  P          L            L+++       +RG  IH  L 
Sbjct: 775  AHLSVTAIEDWLRDPYTIYAKYILKL----------LPLDAVDMPLSAADRGSAIHDALG 824

Query: 792  VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS---- 847
                L      +          +   A   +              +    +    +    
Sbjct: 825  DFTKLYPANLPDDPEDVMRAIGERHFAPLMQRPEARALWWPRFQRIAAWFAEWERTRRAH 884

Query: 848  ----EVSVSGKINCPKKD---IIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYT 899
                +  VSGKI  P       ++S R D+I       F I +YKT        + +   
Sbjct: 885  LVRIDAEVSGKIEIPIDGDRKFMLSARADRIEHLGGGRFAILDYKTGRPPSS--KQVRIG 942

Query: 900  HIAQLSIYEKILKD-----SYPNKSLVCLLIYVS--------EPKVFII---------PQ 937
               QL++   IL+           S+   L+YV         E  +  +         P 
Sbjct: 943  LSPQLTLESAILRKGGFAGIPAGASVNE-LVYVRLSGNSQPGEACLVNLNNGKTDKQSPD 1001

Query: 938  NKLNKAFAEIST 949
               ++A  E++ 
Sbjct: 1002 EAADRALEELTA 1013


>gi|313839999|gb|EFS77713.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1]
          Length = 748

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/438 (12%), Positives = 118/438 (26%), Gaps = 58/438 (13%)

Query: 1   LKNRFGLS---LNESY--ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKK-AQTLQ 54
           L     L+              K+L       +  ++  +  +   G P +       L 
Sbjct: 299 LHRAVSLARENPGARIIITTFTKNLAHELSASLESLDPALPRASALGQPGVYVIGIDALA 358

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINK-KSPDLKEKL------KKSQDEF 107
            A   +   +    +     T         + +++     P++ E+L      +   ++ 
Sbjct: 359 NAVVREAGADVAEGVLGAPRTDLSRRTSQWLWRDVLDHAGPEVPERLAHHRLLETEYEQV 418

Query: 108 ---------IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
                     +        + F+           L   Y +  + +  + F +       
Sbjct: 419 ILPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVKKYRDDSRISGTISFPEAAAIAAQ 478

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
            L +    A          +H+L+DE QD +   W +IRSL  +          P  +F 
Sbjct: 479 YLTRHSPLA----------DHVLVDEGQDLTPAHWRLIRSLVPE---------GPNDIFI 519

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
             D  Q IY       +                  +     L L++R+TA IL     V 
Sbjct: 520 AEDSHQRIYGHRLVLSRY-------------GIMTRGRSRRLTLNYRTTAQILRWSTHV- 565

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
              E    +  D     +    R  + G   +     +  +      +       D   +
Sbjct: 566 --LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCTTITEEFDYLAKVVGQWAKDRQSE 623

Query: 339 ESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            ++  +  R     + + +              I     +V+   R      + +  F  
Sbjct: 624 TTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPGAPVVMTMHRAKGIEFSKVFLFGV 683

Query: 398 NDYKISVVGNDRFILTDH 415
           +   I +   D     D 
Sbjct: 684 SSRSIPMGIKDYDFDKDE 701


>gi|314968415|gb|EFT12513.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1]
          Length = 751

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 111/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q +Y       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIFIAEDSHQRVYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 663

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +V+   R      + +  F  +   I +   D     D 
Sbjct: 664 APVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|228964108|ref|ZP_04125233.1| UvrD/REP helicase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228795595|gb|EEM43077.1| UvrD/REP helicase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 778

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAAKMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|229028824|ref|ZP_04184925.1| UvrD/REP helicase [Bacillus cereus AH1271]
 gi|228732395|gb|EEL83276.1| UvrD/REP helicase [Bacillus cereus AH1271]
          Length = 776

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|167893641|ref|ZP_02481043.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           7894]
          Length = 255

 Score = 69.2 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 83/236 (35%), Gaps = 9/236 (3%)

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNE 540
           ++       + +       +  + G  +  ++ ++    E      + L E        +
Sbjct: 18  VERFSRYRLLWRERGFAVMWRTLAGELRIAERLMAGADGERRVTDVNHLAELTQARASAQ 77

Query: 541 QNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF          
Sbjct: 78  PGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLR 137

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      +D+ G  +        +       +   +    E  RL+YV +TRA 
Sbjct: 138 EPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVYVALTRAV 195

Query: 660 DQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
            +  +    + ++ + K++ +     +V  +  + +   K    ++   + W A  
Sbjct: 196 YRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAELAERWQALA 251


>gi|320327008|gb|EFW83024.1| hypothetical protein PsgRace4_26815 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 633

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 75/590 (12%), Positives = 163/590 (27%), Gaps = 124/590 (21%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           L  A+     Y     +  ++  ++++   + +L        I          IL+DE Q
Sbjct: 125 LRGAEVQYKEYTRV--REAIVSHDEILKLAHGMLSAYPKLCDIAK---DRYKFILVDEYQ 179

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DTS +  +++        V     S    +   GD  QSIY     +             
Sbjct: 180 DTSELVVDIL-------LVHFQKSSKTSIIGFFGDAMQSIYDEGVGDL-----------N 221

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           +    G    + +L  + R+   I  + +++        G++++++T     +   G+V 
Sbjct: 222 KYRKLGLVEEVKKL-QNRRNPKLIYELANRL-----RTDGITQEASTDENAPNMSEGKVI 275

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA---------------- 350
              +     +    + +  ++S    F  + +    ++    IA                
Sbjct: 276 CGNMKLVFTATDLDKLDEVKDSLGWDFKDVKENKELNLTHNLIAPKAGFAELMLIYDGDK 335

Query: 351 -----YTISNMIGTDTIFSN----------GKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                  I + I    I  +                    +  +   +   P I      
Sbjct: 336 IIAYRNRIKDFIKDGNIEEDFSGFTFGEVIDYLVERFPGKVKDVTPTKGMKPFIDSHQEL 395

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK 455
            +       V   R  +               I  ++DD S      +       D + K
Sbjct: 396 YQIALATPYVTFRRMYVAKES----------LIDDKKDDPS-----ATSKAGSKRDALIK 440

Query: 456 ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR- 514
              +      +YE  +       ++F+     I  +          D  + +     G  
Sbjct: 441 HLFKIQNIINLYETGRYNEFLKRTEFK-----IRSVEDKRLLKKIIDEISAMSDRSIGEV 495

Query: 515 QQFISRFG-NEVIDVLDEFLNFTLR-NEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
                  G  +  D L  F + +    E+       E  +           +        
Sbjct: 496 IDRADELGVCKKDDNLSIFFSRSRYLYERVISVKFNEFQNLFRYLEGYTPFSTQ------ 549

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
                H  KG +   V ++   +  +++ + K +                          
Sbjct: 550 -----HKIKGAQFDNVLVI-LDNGNWNNYNFKYIF------------------------- 578

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                   +S  E   +L YV  TR+   L++  + N S +  +  R W+
Sbjct: 579 ---EGAGNESVIERTRKLFYVCCTRSKRSLVVY-YRNPSEKALATARKWF 624


>gi|228957420|ref|ZP_04119175.1| UvrD/REP helicase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228802253|gb|EEM49115.1| UvrD/REP helicase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 778

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|119490340|ref|ZP_01622818.1| hypothetical protein L8106_13600 [Lyngbya sp. PCC 8106]
 gi|119453999|gb|EAW35153.1| hypothetical protein L8106_13600 [Lyngbya sp. PCC 8106]
          Length = 265

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 8/171 (4%)

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
           G ++H  L  I+    ++      S+     +    +    L      +LE        +
Sbjct: 40  GKVLHAALAKIYGDWSYESPIPNISWIRFCWERVSGELTPELSAQGLEILEGYYYQFIKT 99

Query: 843 -CDSYSEVSVSGKINCPKK----DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                  V+V GKI         D  ++GR D++    + + + +YKT   VP      P
Sbjct: 100 LPVLRKPVAVEGKIKAQLNFCNLDFKVTGRYDRLDYLDEGLELIDYKTSRKVPTFE---P 156

Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEIS 948
                QL +Y   L+  Y        LIY+   ++        +K  AE+ 
Sbjct: 157 DGIDLQLGLYYLALEQRYQKSLKQLSLIYIIPGELVTFQATPYHKQQAELI 207


>gi|49480066|ref|YP_035300.1| ATP-dependent DNA helicase replicase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49331622|gb|AAT62268.1| ATP-dependent DNA helicase replicase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 776

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|198277296|ref|ZP_03209827.1| hypothetical protein BACPLE_03508 [Bacteroides plebeius DSM 17135]
 gi|198269794|gb|EDY94064.1| hypothetical protein BACPLE_03508 [Bacteroides plebeius DSM 17135]
          Length = 1606

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD    +  ++R+L          H+    + AVGD+ Q+IY F G++   + +
Sbjct: 1180 LVIDEAQDMGAEEHALVRALM--------HHNEEMRVIAVGDDDQNIYEFRGSDSGYMWQ 1231

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
              +    R          +E+  ++RS   ++   +         
Sbjct: 1232 LTQETGSRF---------VEMTENYRSARHVVAAANDFVKGIGGR 1267


>gi|260909824|ref|ZP_05916516.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
            F0295]
 gi|260636055|gb|EEX54053.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
            F0295]
          Length = 1627

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 84/249 (33%), Gaps = 27/249 (10%)

Query: 145  CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             + D +D++     ++ + +V      K       ++IDE QD    ++ ++ +L     
Sbjct: 1168 NLEDAKDVVRKAAQMINEGEVEPNKIGK-----AVLVIDEAQDMGEAEFALVEALM---- 1218

Query: 205  VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                  +    + AVGD+ Q+IY F G+    + R             +   +IE+  ++
Sbjct: 1219 ----AQNEDMRVIAVGDDDQNIYEFRGSNSAYMQRLT---------HVEGSRLIEMTENY 1265

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS   ++   +            +  +     +    +    T  L++ V  +   + + 
Sbjct: 1266 RSDMHLVAFANDFVKAMPGRMKTAPITAICNENGWVEVVHHQTKYLYQPVAEELVQRKDG 1325

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                  +  +       A +  + I   +   +     ++  + R    K     + KR 
Sbjct: 1326 GTTCLLTQTNEEAVIMLALLRRKGINAKLIQSLDGFRFWNMAETRYFLRK-----LDKRG 1380

Query: 385  DTPLITFLT 393
             T +I    
Sbjct: 1381 QTAIIPDEI 1389


>gi|261364030|ref|ZP_05976913.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria mucosa ATCC 25996]
 gi|288568060|gb|EFC89620.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain
            protein [Neisseria mucosa ATCC 25996]
          Length = 1322

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 175  QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                +IL+DE QD +   +E++ +L       ++      T+ AVGD+ Q+IY+F+G   
Sbjct: 1232 AGFRYILVDEYQDITEEHYELVSALAGRKREDED---EKLTIIAVGDDDQNIYAFNGTSN 1288

Query: 235  KRVLREKRINQKRATNAGQKFSI 257
            + + R  +    +     + ++ 
Sbjct: 1289 EYIHRFLQDYGVKHELPPKSWTH 1311


>gi|228944770|ref|ZP_04107133.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228814798|gb|EEM61056.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 776

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|229149353|ref|ZP_04277589.1| UvrD/REP helicase [Bacillus cereus m1550]
 gi|228633995|gb|EEK90588.1| UvrD/REP helicase [Bacillus cereus m1550]
          Length = 778

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 99/270 (36%), Gaps = 52/270 (19%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKEAKVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKST---LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
           +   + +   +R    T +    T       T A ++    E+ K+      ++D+   T
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTDASWVTG--EKPKE------WDDICSLT 506

Query: 157 NDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
            ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L     
Sbjct: 507 VNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF---- 562

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                      +  +GD  Q+I++ H +E         +     TN       I L  S+
Sbjct: 563 -------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------INLTRSY 608

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           RST  I+     +    +N      D    
Sbjct: 609 RSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|52144276|ref|YP_082552.1| ATP-dependent DNA helicase replicase [Bacillus cereus E33L]
 gi|51977745|gb|AAU19295.1| ATP-dependent DNA helicase replicase [Bacillus cereus E33L]
          Length = 777

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|229120659|ref|ZP_04249902.1| UvrD/REP helicase [Bacillus cereus 95/8201]
 gi|228662664|gb|EEL18261.1| UvrD/REP helicase [Bacillus cereus 95/8201]
          Length = 776

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|260654705|ref|ZP_05860195.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]
 gi|260630721|gb|EEX48915.1| conserved hypothetical protein [Jonquetella anthropi E3_33 E1]
          Length = 943

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 65/571 (11%), Positives = 145/571 (25%), Gaps = 76/571 (13%)

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            +   Y +         +TD    +             D  S   ++  P          
Sbjct: 300 EVMRRYGVPCRRARTLKITDTPFWRLSQMARAAASQNWDAFSTSELMAHPAMASGPLPDK 359

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVI-----KYIHELIHIAQFCSPHDFFTLILG 509
               +    + + E  +   +   +  Q +      + +   +          FF+    
Sbjct: 360 SPSGRDAWRDALPEKSRDAFDDACAFAQEIQSGGTPETLLAALLRLGERRLLTFFSNASS 419

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
              G    +     E    LDE     L   +           +L+           A+ 
Sbjct: 420 GTAGTDGTLDGQIAEYNGALDELRRKLLAIRETLRDLKSAGSRKLDGGDAWEYLTAWADG 479

Query: 570 NEVRIMTVHTAKGLES----------PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
           + +R                      P +F+    + V+             L  D    
Sbjct: 480 SSIRPQQPLGDALELWSGSLPVFFSRPYLFVSGLNASVWPGS-----LAETPLLSDADRQ 534

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                  + N     L+   +   +  + RL+         +L I   + T  + +  + 
Sbjct: 535 TISGSPDAENAGHLPLLSERRSQQEVLFRRLIASAG-----RLTILSWTTTDEKSRPLEP 589

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
           T +  +  ++ +          +    +  +        P + PL     ++  ++    
Sbjct: 590 TPF--LPSAYSDGWIASDPPTVSRGLDELLV--------PRDQPLIGGVEVRSPLEFAPW 639

Query: 740 PKKLFSPIKND-INEPYILNPSTIDTKGKTN---------LESLLSDNQTFNR---GLII 786
           PK    P        P  L  S ID                 +       ++R   G   
Sbjct: 640 PKDRVFPSPLPGAKVPSALPMSAIDAFADCPYRFYVQNVLRLAPQETRPAYDRLLVGTAT 699

Query: 787 HKLLQVI----FTLPEHKRKNFITSYCTKNAKLWP----------AKEYKNLLLSITRLL 832
           HKL +++        +   +N    +  +                A+++  L   I R  
Sbjct: 700 HKLWEMVWSAKNAGEKESIQNLSARFLDEALLGPSGYPELGTPQLARQFALLKSQIRRCA 759

Query: 833 E-NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF-EYKTHHHVP 890
                +   ++     +V +   ++         GR D+I +     F+  +YK      
Sbjct: 760 ALQDKIDERLAPH-RVKVMIETPLSLQLDHAFFRGRADRIDVLDDGSFLVWDYKLGKS-- 816

Query: 891 QEIEHIPYTHIA--QLSIYEKILKDSYPNKS 919
                    +    QL +Y    + S   + 
Sbjct: 817 -------EKYAKSFQLPLYALACEKSTGKRP 840


>gi|254725569|ref|ZP_05187351.1| helicase, UvrD/Rep family protein [Bacillus anthracis str. A1055]
          Length = 776

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 91/264 (34%), Gaps = 40/264 (15%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSFFLTQKFT--PQKNIITQEINKKSPDLKEKLKKS- 103
           K+   +++A   +   EE   LLS     + +    +K        +        L +  
Sbjct: 398 KQIDAIEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFQDFEKETRVLGRMI 457

Query: 104 -QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            + +   +R    T +    T     L    +    E  K+      +D+   T ++L +
Sbjct: 458 VRKKLKPLRKGVQTLRFINFTGIYKQLFTDASWGTGEKLKEW-----DDICSLTVNMLNE 512

Query: 163 -----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
                 D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L           
Sbjct: 513 GKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF---------- 562

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  +GD  Q+I++ H +E         +     TN       I L  S+RST  I
Sbjct: 563 -PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------INLTRSYRSTKPI 614

Query: 271 LTVVDKVFSIPENAQGLSEDSTTT 294
           +     +    +N      D    
Sbjct: 615 IEFTRALVPEGKNIHAFERDGEKP 638


>gi|229095646|ref|ZP_04226627.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
 gi|228687778|gb|EEL41675.1| UvrD/REP helicase [Bacillus cereus Rock3-29]
          Length = 777

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAAKMTVLGDFNQAIFA-HASETVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPQGKNINAFERDGEKP 638


>gi|16127767|ref|NP_422331.1| hypothetical protein CC_3537 [Caulobacter crescentus CB15]
 gi|221236587|ref|YP_002519024.1| ATP-dependent nuclease subunit B [Caulobacter crescentus NA1000]
 gi|13425271|gb|AAK25499.1| hypothetical protein CC_3537 [Caulobacter crescentus CB15]
 gi|220965760|gb|ACL97116.1| ATP-dependent nuclease subunit B [Caulobacter crescentus NA1000]
          Length = 996

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/400 (11%), Positives = 90/400 (22%), Gaps = 47/400 (11%)

Query: 525 VIDVLDEFLNF-TLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKG 582
             + L   +       E    +S Q     L+        R   A H  +RI+    A+ 
Sbjct: 531 AGECLGALMAALIQDGEPLPDASPQAFGDILDRLVNEETVRVGGATHPRLRILGAIEARL 590

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           + +  + L      V+         +   +    G+P    +     +  +         
Sbjct: 591 VRADRLVLAGLEEGVWPQGAPIDPFLSRPMRQRLGLPPPERRIGLTAHDFAQAASAPDVV 650

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                 R                          + +  W   +             +   
Sbjct: 651 LVHCERR----------------------GGAPAVESRWLWRLKTLAAGAGLELPRRDDV 688

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
           +       A           P    E   + M   ++      P      +   L P   
Sbjct: 689 TDWVSALDAPGPYAPIGRPAPKPPVEDRPRKMAVTRVEALTRDPYAVWARDILKLYP--- 745

Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI---------TSYCTKNA 813
                  LE      +   RG  IH   +    L                   +  +   
Sbjct: 746 -------LERPDEPVEARARGTAIHAAFERFAELYPDAVPAEAASAFEKLYVDALVSAGM 798

Query: 814 KLWPAKEYKNLLLSITRLLEN-PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
                   K L       + +              E     ++    +   ++ + D+I 
Sbjct: 799 PPTALAREKALAREAAAWVADWERQRRTQVRRIVVEAEGKLELVINGRPFTLTAKADRIE 858

Query: 873 ISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            +      I +YKT     Q  + +      QL++   IL
Sbjct: 859 PTPDGTAHILDYKTGAAPSQ--KQVDTGFSPQLTLTAAIL 896


>gi|167587568|ref|ZP_02379956.1| exodeoxyribonuclease V, beta subunit [Burkholderia ubonensis Bu]
          Length = 304

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 71/284 (25%), Gaps = 48/284 (16%)

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                   + +      +E +   +L + + +D W    +S+        E         
Sbjct: 5   PLPVPARRERLAAGHDANEALAA-RLASRLLRDAWRMASFSSLTASMAREEAGVAAVPED 63

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
           D +     L +   +D       +P     +     + +L   +    G  +H+L ++  
Sbjct: 64  DLRPDHDALAALAPDD-------DPGDAWLEAAPPDDDILVFPRGAAAGECLHRLFELSD 116

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP---------MMTTAMSCDS 845
                                   +  + L   + RL+++           +        
Sbjct: 117 FTDPGSWHAAALGALHDRPVEAEPELGERLPAMMARLVDDVVRTELVPGMRLAGLDPARR 176

Query: 846 YSEVSV----------------------SGKINCPKKDIIISGRIDQISISQQNIFIFEY 883
            +E+                           +        I G ID I       +I ++
Sbjct: 177 LNEMGFLFAAPSLDLTALRRLLVAHGYPDVALEASVLAGYIKGFIDMIVEHDGRFWIVDW 236

Query: 884 KTHH---------HVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
           K++H             +     + +  Q  +Y   L      +
Sbjct: 237 KSNHLGNTPDAYGPRALDAAMADHAYHLQALLYTVALHRYLRGR 280


>gi|323697652|ref|ZP_08109564.1| hypothetical protein DND132_0232 [Desulfovibrio sp. ND132]
 gi|323457584|gb|EGB13449.1| hypothetical protein DND132_0232 [Desulfovibrio desulfuricans
           ND132]
          Length = 974

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/518 (10%), Positives = 128/518 (24%), Gaps = 67/518 (12%)

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
             DD       R E   +   +      G +    + +    L  +A           + 
Sbjct: 416 DWDDDALKDVDRAEAGPLLAEVLDRCLTGFASATTLAQLGEALAGLAAMLHARG--EKLW 473

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                  + + R  N V   + +     +  E    S+L  ++  +              
Sbjct: 474 HTYLLDAECLFRLTNSV---IPQLKGAEICFEPLDQSTLHAMLRRM--LDQERVSFEPDP 528

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              ++++ V   + L    +F++D   +     +     +   L    G+P    +    
Sbjct: 529 LTGLQVLGVLETRLLHFDKLFILDAVEERLPGTNPFDPLLPDPLRRLLGLPDAHERDNVS 588

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
                 L+   +++                              ++KS +  + + +   
Sbjct: 589 GYNFYRLLMGAREAVIY-----------------YQNGVQPGLLDQKSVRSRFVEQLLWE 631

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
                          +    + A       P            +      +  K  SP  
Sbjct: 632 RELSAGRLLTPEDGIVRTVTFPAGAL----PAGPEPVPATEGGRRALTAFLTAKGLSPSA 687

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-----------QVIFTLP 797
            D               G   ++S+  +      G ++H +L           + +  L 
Sbjct: 688 LDTYMNCPKRFFYQYLSGVRPVDSVDEEGDRSEFGSLVHDVLKKFLLPHVGTGEDLAGLD 747

Query: 798 EHKRKNFITSYCTKN--AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
                   +            P      L+ +    LE  +     +     E  + G +
Sbjct: 748 PAPLLTAFSETFRAGPLFARLPLDTRTALMEAGRYRLEQFVAAQQPATLLGLEQPLEGVL 807

Query: 856 NCPKKDIIISGRIDQISISQQNIFIFEYKTHH-------------------------HVP 890
                DI   GR+D++   +  +FI +YKT                             P
Sbjct: 808 AQDGLDIPFKGRMDRVERRENGVFILDYKTGGAQLPKARFWGDMELQDRMAGFLEGDVDP 867

Query: 891 QEIEHIPYTHI-AQLSIYEKILKDSYPNKSLVCLLIYV 927
                +       QL  Y  +  ++     +   L+ +
Sbjct: 868 DLAADLADAVRSVQLPAYLHLYAEATGESPVNAGLVLL 905


>gi|150025612|ref|YP_001296438.1| hypothetical protein FP1561 [Flavobacterium psychrophilum JIP02/86]
 gi|149772153|emb|CAL43629.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 633

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 69/560 (12%), Positives = 158/560 (28%), Gaps = 101/560 (18%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y   K+   ++  ++L+I  N + ++      I   +      I IDE QDT     
Sbjct: 136 YKEYLRLKE--GIISHDELLIVANSMFQRFPKLCDI---LKDRYQFIFIDEYQDT----- 185

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
              + + E F    N       +   GD  QSIY                  +   +  +
Sbjct: 186 --HKEVIEIFLTHLNQSKKKNIIGFFGDAMQSIYPDGIGNLD----------EYKGDEAE 233

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
           K   ++   + R+   +  + +++    +         T +  + +  +      +   +
Sbjct: 234 KVKEVKKDQNRRNPKLVYELANRLRVNADG-----LIQTHSDENNAPNMSVGIVKEGNIK 288

Query: 314 VVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA--------YTISNMIGTDTIFSN 365
               +D      ++     F +  +    ++    IA          I +         N
Sbjct: 289 FAYSNDGNLQTFRDYLGWDFSNSKETKELNLTHNLIAGKAGFRGLMEIYD-RDRIIELKN 347

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              + I+  +I +                 + +   + V  + +          DL    
Sbjct: 348 KITKKIKEDNIEI---------SEEATFGEVIDQVNLPVKSSTQVGQFITQN-NDLYTTA 397

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R             + +       +D +     Q  E E      +      + K Q+ I
Sbjct: 398 R--------NYPFTVFR--KIYLDKDQLLDDKKQDKEDENKKGSKRDHLIKHLFKIQNNI 447

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             +++     +F    DF          +++ + +   E+IDV D+ +   +        
Sbjct: 448 S-LYQNRKYNEFLRITDFRYNF--KNIEQKRLLQKNIIELIDVGDKTIEQIITEANEKGI 504

Query: 546 SL--QELISELEQYP-----------PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
            L    L+  + +                ++ +          T H  KG E   V ++ 
Sbjct: 505 CLVDDNLMRFITEKEYVYNRVKNIRFSEFQKLYDYLEGATPFSTQHKTKGDEFNNVLVI- 563

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
             +  ++  + + + +                                 S  E   ++ Y
Sbjct: 564 LDNGKWNDYNFEYLFLNIGSP----------------------------SVLERTQKIFY 595

Query: 653 VGMTRASDQLIICKHSNTSN 672
           V  TRA + L +  H+    
Sbjct: 596 VCCTRAKENLAVYYHNPKPT 615


>gi|329955597|ref|ZP_08296505.1| ATP-dependent DNA helicase, RecQ family [Bacteroides clarus YIT
            12056]
 gi|328526000|gb|EGF53024.1| ATP-dependent DNA helicase, RecQ family [Bacteroides clarus YIT
            12056]
          Length = 1624

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD    +  ++++L          ++    + AVGD+ Q+IY F G++   + R
Sbjct: 1197 LVIDEAQDMGTEEHALVKALM--------ANNEEMRVIAVGDDDQNIYEFRGSDSSYMYR 1248

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
              + N             +E+  ++RS    +   ++     +  
Sbjct: 1249 LAQENGSTF---------VEMTENYRSAHHPVNFANEFLKNIDKR 1284


>gi|57242576|ref|ZP_00370514.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57016861|gb|EAL53644.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 794

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 106/359 (29%), Gaps = 66/359 (18%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               V  M +  ++GL    V +VD    +   + + ++ +   +    G+  +  +   
Sbjct: 421 GGGAVTAMGILESRGLSFDGVIVVDFNEDLIPKRSVNELFLNNEVRTKAGLISYEKRENL 480

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
           +                    R  Y  + + + ++ IC   N    +          +  
Sbjct: 481 Q--------------------RFYYEQLFKNAKKISICYVENEEKSRSRLLEDLEFRLDL 520

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
           +    ++     L  +    +           ++       +  +L    K  +  F   
Sbjct: 521 TKEFSQKAYLNALKLNYKAKQINLEPPRAPKLKHNLFATPLSYSRLTLFLKSKRTYFYKY 580

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
              + EP  L     +   +  L++L         G+  H++L++ +       +   TS
Sbjct: 581 IKHLKEPRELKMDIKEQNDRKRLKNL---------GIFTHRILELYYKYYNFFDEKLFTS 631

Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS----------VSGKIN- 856
              K  +                 L+  ++       +  E            +   ++ 
Sbjct: 632 LLEKEGQ-----------KEGLDALDLELLKMKFKEFAKKEQERFKQGYHIKHLELNMDK 680

Query: 857 ---CPKKDIIISGRIDQISISQQNI--FIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
                 + I ++G+ID+I  S +     I +YK+     +           QL+ Y+ +
Sbjct: 681 SIILESQRIELTGKIDRID-SNERFGELILDYKSGKIPEKSY---------QLAFYKLL 729


>gi|290891566|ref|ZP_06554623.1| hypothetical protein AWRIB429_2013 [Oenococcus oeni AWRIB429]
 gi|290478819|gb|EFD87486.1| hypothetical protein AWRIB429_2013 [Oenococcus oeni AWRIB429]
          Length = 268

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 65/187 (34%), Gaps = 26/187 (13%)

Query: 751 INEPYILNPSTIDTKGKTNLESLL--------SDNQTFNRGLIIHKLLQ---VIFTLPEH 799
             E    + S I T  +               S  +    G   H +L+         + 
Sbjct: 2   AEEKPRFSFSDIRTFQECPFRLRERKAKRYMESPTEAMLVGSYAHAMLEGDKSTDDFIQE 61

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
              + + +   KN  +   K +K++++++  + +     +  +  ++ E+     I    
Sbjct: 62  HSVDMMGNIGKKNQGI--KKVFKDIVMAVNEVKKTETYQSFDTLHTHKELY----IRADY 115

Query: 860 KDIIISGRIDQI-SISQQNIF-IFEYKTHHHVPQEIEHIPY-------THIAQLSIYEKI 910
            D +ISGRID +    +  I  I ++KT        +            +  QL++Y  +
Sbjct: 116 DDFVISGRIDVLRFDHENKIIEIIDWKTAASFEDIFDKNIRAYLEWYSHYREQLALYAWL 175

Query: 911 LKDSYPN 917
           +   + +
Sbjct: 176 VAQEFSD 182


>gi|302380761|ref|ZP_07269226.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311704|gb|EFK93720.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
          Length = 892

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 77/674 (11%), Positives = 192/674 (28%), Gaps = 73/674 (10%)

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ---CNPQQESWTS 331
           +      ++           I     +  +   + ++  V   ++ +    N  Q+    
Sbjct: 169 NFNIQKNKDIYIHGFSEFRPIELEVIKQLENYDINVYVFVDYYNEYKSKLANQLQDIGFE 228

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLI 389
              +  + +    + +++    + ++  D +         +     + +L+ K       
Sbjct: 229 VVQNDEKSNPNKFIEKKVVKLTNEILEKDRLIDEIANDSYIYDYNKMAILLEKDSSKR-- 286

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
             +   LK  + I V G+D     D+    D++ L     ++        +L S    F 
Sbjct: 287 -EILNTLKL-HDIPVFGDDYISYRDYKIFSDIINLLD--KNRSFKQYIFSLLDSCFLEFD 342

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ------FCSPHDF 503
             D         + +       +        +   ++ + ++                + 
Sbjct: 343 LKDKINFRNILSDFDFDKWEDLEKIFKLNVNYGTNLEILEKIKSYYHSFIEKDNMILSNL 402

Query: 504 FTLILGAKKGRQ--QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
             L+   +      +  +     +++ LD+     ++  +N  S L +LI  L+      
Sbjct: 403 IELVQQKESEDVGFKLFAEKLLIILEDLDKTYAELVKKSKNINSYLIDLIKNLKVDSTDY 462

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                   + +RI ++   +     V+++V+    V   K                    
Sbjct: 463 LV------DGIRIYSLTDIRLSNYDVLYVVNMNDDVIPGKMNYDFFNNEDNIVFLQKNGI 516

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
              S + N   +        S  +    L Y   +    +LI+ K+   + +        
Sbjct: 517 DILSDADNRRRNIDRFIDAVSRADRKIYLSYNTESNVKSRLILDKNIKQNQKIAKINSQN 576

Query: 682 YDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
              V     +     +K  L   +N+ E           E      +  +K+ +   K+ 
Sbjct: 577 IKKVDTKKLHSISVYEKYSLKQHLNRIESRISSKDISDFEVDDKTTQYILKKELSSTKLE 636

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                P+K        L P                     + G I+H  L+  + +   +
Sbjct: 637 TYFECPMKFYFRYYLKLRPQIKSRL--------------LDIGTILHNTLEEFYGINISQ 682

Query: 801 RKNFITSYCTKNAKLWP-------------------AKEYKNLLLSITRLLENPMMTTAM 841
            K+ I   C  +                          +Y+  L  +   +   +     
Sbjct: 683 IKDAIDGKCELDISSLDGLLKNSFEKFGLNTDIKENEFDYEKYLNKLKDFVRTDIY---- 738

Query: 842 SCDSYSEVSVSGKINCPKKDII-------ISGRIDQISISQ-QNIFIFEYKTHHHVPQEI 893
             +  +E          +  II        +GRID++  +    I + +YK   +  ++ 
Sbjct: 739 --NMKNEREKFYPFKLEEDFIISLDESTKFTGRIDRVDKTDSGKIRLIDYKLSKNSFRKA 796

Query: 894 EHIPYTHIAQLSIY 907
           + +      Q +IY
Sbjct: 797 KDLDKNKGFQFAIY 810


>gi|30019196|ref|NP_830827.1| ATP-dependent DNA helicase rep [Bacillus cereus ATCC 14579]
 gi|229126452|ref|ZP_04255467.1| UvrD/REP helicase [Bacillus cereus BDRD-Cer4]
 gi|29894739|gb|AAP08028.1| ATP-dependent DNA helicase rep [Bacillus cereus ATCC 14579]
 gi|228657032|gb|EEL12855.1| UvrD/REP helicase [Bacillus cereus BDRD-Cer4]
          Length = 777

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGAKP 638


>gi|229042890|ref|ZP_04190624.1| UvrD/REP helicase [Bacillus cereus AH676]
 gi|229143753|ref|ZP_04272174.1| UvrD/REP helicase [Bacillus cereus BDRD-ST24]
 gi|296501756|ref|YP_003663456.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis BMB171]
 gi|228639706|gb|EEK96115.1| UvrD/REP helicase [Bacillus cereus BDRD-ST24]
 gi|228726437|gb|EEL77660.1| UvrD/REP helicase [Bacillus cereus AH676]
 gi|296322808|gb|ADH05736.1| ATP-dependent DNA helicase rep [Bacillus thuringiensis BMB171]
          Length = 777

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDKTNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGAKP 638


>gi|225862988|ref|YP_002748366.1| helicase, UvrD/Rep family [Bacillus cereus 03BB102]
 gi|225790764|gb|ACO30981.1| helicase, UvrD/Rep family [Bacillus cereus 03BB102]
          Length = 776

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|196036432|ref|ZP_03103828.1| helicase, UvrD/Rep family [Bacillus cereus W]
 gi|195990906|gb|EDX54878.1| helicase, UvrD/Rep family [Bacillus cereus W]
          Length = 776

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|284161244|ref|YP_003399867.1| UvrD/REP helicase [Archaeoglobus profundus DSM 5631]
 gi|284011241|gb|ADB57194.1| UvrD/REP helicase [Archaeoglobus profundus DSM 5631]
          Length = 541

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 35/161 (21%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   +   K+     D+ DL+I      +  +    I  KI        IDE QD + ++
Sbjct: 177 IIERWLNFKENAGFFDYVDLLI------ESFEEGIEIEAKIG------FIDEAQDFNRLE 224

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +E++ +  E              ++  GD+ Q+IY + GA+P   L  K           
Sbjct: 225 FEIVETTIEQLE----------RVYLAGDDDQAIYGWKGAKPDFYLDLK----------- 263

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                + L  + R  + +     ++ +  E  +    +   
Sbjct: 264 --GEEVILSKTHRLPSRVWNFAKQIITQVERRKEKEIEPRE 302


>gi|213961883|ref|ZP_03390149.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
 gi|213955672|gb|EEB66988.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
          Length = 909

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 61/453 (13%), Positives = 119/453 (26%), Gaps = 83/453 (18%)

Query: 507 ILGAKKGRQQFISRFGNEVIDVL---------DEFLNFTLRNEQ-----NSYSSLQELIS 552
           I  A     +  ++   E    L          +  N   + ++     +S  +L     
Sbjct: 423 IDNAITLIYRLKAQIDPESNTHLLTQEYAYRFFQLFNQLKQLQEQYGYIDSVKTLYHF-- 480

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            L+    +           +++M V  ++ L+   V +      V          I   +
Sbjct: 481 YLDVLQKSSLNFRGEPLEGLQVMGVLESRSLDFDRVIITSVNEGVLPLGKSGDSLIPYDV 540

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                +P +                         Y+   Y  + RA    +       S 
Sbjct: 541 KHVLELPTFK-------------------ERDAVYSYNFYRILQRAKQVHLFYDTEMDSL 581

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
           + K   R    ++ +     + + +IK                       PL  E+T   
Sbjct: 582 KSKEKSRFILQLLAEKIPTHKVIHQIKAPKVYP-------------AILRPLTIEKTTAV 628

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
           +   + + +K  SP          L             + +    +    G I+H  L+ 
Sbjct: 629 IDALKVLAEKGISPSALTTYIRNPLTFYEQQVLHIYEEKEVEETVEARTFGNIVHGTLED 688

Query: 793 I--FTLPEHKRKN-----------FITSYCTKNAKLWPAKEYKNLL------LSITRLLE 833
           +    L E   +             I     +  +    +  KN L        +   L 
Sbjct: 689 LYTPFLNEILTEEHIKKMQPLVLPTIEKRFEEEYRSTDFRTGKNWLIFNVIEKYVRSFLA 748

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKK------DIIISGRIDQISISQQNIFIFEYKTHH 887
              +    S      + +  KI  P +       I   G ID++      + I +YKT  
Sbjct: 749 LE-LNEIKSGTEIIPLYLEQKIKIPFQAPHLPFPIYFKGIIDRVDRRNGVLHIIDYKTGI 807

Query: 888 HVPQE---------IEHIPYTHIAQLSIYEKIL 911
               +         I  I Y    QL  Y  ++
Sbjct: 808 VEETDVRIKDWNNLITDIKYGKAFQLLTYAYMI 840


>gi|167635442|ref|ZP_02393756.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0442]
 gi|254740158|ref|ZP_05197850.1| helicase, UvrD/Rep family protein [Bacillus anthracis str. Kruger
           B]
 gi|167529270|gb|EDR92023.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0442]
          Length = 776

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|228932441|ref|ZP_04095322.1| UvrD/REP helicase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228827131|gb|EEM72884.1| UvrD/REP helicase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 776

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|160945991|ref|ZP_02093217.1| hypothetical protein FAEPRAM212_03524 [Faecalibacterium prausnitzii
            M21/2]
 gi|158443722|gb|EDP20727.1| hypothetical protein FAEPRAM212_03524 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1160

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 102/1021 (9%), Positives = 245/1021 (23%), Gaps = 156/1021 (15%)

Query: 12   SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
            +   IY++L       V     + SL+            QTL  A +   +      L  
Sbjct: 83   TEARIYRELGDALSGMVESY-SFTSLAEHILAIEGGAAVQTLTDAGRAVLVRRALEELQD 141

Query: 72   FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                     +                E + + +   +  +      +   +  A L    
Sbjct: 142  NVHYYYRHRRSAAF-------CQMAAETIDELKSAGLSGQQLQELARDCGTESAKLGELA 194

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT--- 188
             +   YE        +D  D +    D L+       +   + +    + IDE  DT   
Sbjct: 195  LIFQGYESLLAGTG-MDPADRLELAADRLEAALARDELPDFLRER--EVFIDEF-DTFNA 250

Query: 189  --SLIQWEVIRSL--TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH------GAEPKRVL 238
                +   ++ +L               P  L      KQ            GA+     
Sbjct: 251  PKKRLMGAMLAALPAVTVALCEDGAPMQPGDLELFSGAKQVAAQLRQLARKNGAQVAAPE 310

Query: 239  REKRINQKRATNAGQKFSIIELPLSF----RSTADILTVVDKVFSIPENAQGLSEDSTTT 294
              +R  + +    G       L         S  ++                 +      
Sbjct: 311  LLRRDLRHK-DAPGLAALTELLETGSCTPPESAPELRLFAAASREEEARCAAAAIRRLMR 369

Query: 295  IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
               R  +I  V       +   +++ +                   + ++ A       +
Sbjct: 370  QGVRCGKIAVVCRDISLYRAAVRYEFRMAEIPLYCDEPTTPEFSAPATAVRALLALLRGA 429

Query: 355  NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            +M    T+ +      +   ++  L              R            + R     
Sbjct: 430  DMTEQLTVLAKTGLCDLTEPEVCALENYAYTWSPNAAAWRAEFTK-------SPRGFGDA 482

Query: 415  HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
             L  +D   L R   +++  ++ V  L+  + + + + I +          +Y  +++  
Sbjct: 483  ELTEEDTQNLTRAENARKKLVTAVDTLRGKVRSANAEQISR---------ALYFCLKELG 533

Query: 475  NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
              G    Q  ++ I     I         + +++       + +   G  V +  D F  
Sbjct: 534  AEGQQAVQ--VEDIRTARGIPAAEEAAREWNVVMQLLDEMARLLGSQGITVPEYEDLFSL 591

Query: 535  FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                ++                             + V + +    +      VF++   
Sbjct: 592  LLRSSDLGHIP---------------------QTLDAVVLASAGKMRLDAPDYVFVLGLA 630

Query: 595  SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
               F     +   +  +  D              N +V + +               Y  
Sbjct: 631  EGEFPCTPAESGLLTHADRDLLMAKQIDLPDCFENRVVREQV-------------CFYKA 677

Query: 655  MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS---INKDEWIA 711
            +T  +  L +           +      + +  +    E +           +    W  
Sbjct: 678  LTAPAKGLWMSWPKGQGQTLCAALEPIVEALQPAAPQLELIDLAATPADGLDVLGGGWPL 737

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY---------ILNPSTI 762
             E              E ++       + +    P +   + P           ++PS +
Sbjct: 738  TELERASLTEALRAPGEGVQAPRGLALLQRMEQDPPRQVQDLPTLETLLGRRLHISPSQL 797

Query: 763  DTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITS-YC 809
            +                      ++      G ++H +LQ+ +   P           + 
Sbjct: 798  EKYYTCRYGYFLQYVLGLKPRRRAELSADQSGTLMHWVLQMALDPHPGADNPCAGLRPFL 857

Query: 810  TKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSC------------------------ 843
              +           +     R L  +       +S                         
Sbjct: 858  ELDDAAMADLAAALVDEYARRYLPEDTARFAYLLSRLKKSMTSLLCYLRDEQNQSQFKPV 917

Query: 844  -----DSYSEVSVSGKINCPKKDIIIS--GRIDQ---ISISQQNIFI--FEYKTHHHVPQ 891
                     E +V G++        +   G +D+           ++   +YKT      
Sbjct: 918  ACELKIGRGEDAVPGQVYRLSDGRTVQLVGTVDRADEWIEDDGTRWVRVVDYKTGSKKLD 977

Query: 892  EIEHIPYTHIA---QLSIYEKILKD----SYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
                +   +     Q+ +Y   L       +       +L  +++P    +P+ +  +A 
Sbjct: 978  ----LKEVYCGLDCQMLLYLFSLTRDAGGRFTGAQPAGVLYLLADPAPQTLPREQAARAV 1033

Query: 945  A 945
             
Sbjct: 1034 E 1034


>gi|30261163|ref|NP_843540.1| UvrD/Rep family helicase [Bacillus anthracis str. Ames]
 gi|47526318|ref|YP_017667.1| UvrD/Rep family helicase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183994|ref|YP_027246.1| UvrD/Rep family helicase [Bacillus anthracis str. Sterne]
 gi|165871839|ref|ZP_02216482.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0488]
 gi|167640174|ref|ZP_02398440.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0193]
 gi|170688102|ref|ZP_02879314.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0465]
 gi|170707676|ref|ZP_02898128.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0389]
 gi|177654160|ref|ZP_02936133.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0174]
 gi|190566742|ref|ZP_03019659.1| helicase, UvrD/Rep family [Bacillus anthracis Tsiankovskii-I]
 gi|227816106|ref|YP_002816115.1| helicase, UvrD/Rep family [Bacillus anthracis str. CDC 684]
 gi|229602378|ref|YP_002865592.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0248]
 gi|254682781|ref|ZP_05146642.1| helicase, UvrD/Rep family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254734196|ref|ZP_05191909.1| helicase, UvrD/Rep family protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254753499|ref|ZP_05205535.1| helicase, UvrD/Rep family protein [Bacillus anthracis str. Vollum]
 gi|254758596|ref|ZP_05210623.1| helicase, UvrD/Rep family protein [Bacillus anthracis str.
           Australia 94]
 gi|30254777|gb|AAP25026.1| helicase, UvrD/Rep family [Bacillus anthracis str. Ames]
 gi|47501466|gb|AAT30142.1| helicase, UvrD/Rep family [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177921|gb|AAT53297.1| helicase, UvrD/Rep family [Bacillus anthracis str. Sterne]
 gi|164712416|gb|EDR17950.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0488]
 gi|167511775|gb|EDR87155.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0193]
 gi|170127451|gb|EDS96326.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0389]
 gi|170667997|gb|EDT18748.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0465]
 gi|172080867|gb|EDT65947.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0174]
 gi|190562294|gb|EDV16262.1| helicase, UvrD/Rep family [Bacillus anthracis Tsiankovskii-I]
 gi|227007588|gb|ACP17331.1| helicase, UvrD/Rep family [Bacillus anthracis str. CDC 684]
 gi|229266786|gb|ACQ48423.1| helicase, UvrD/Rep family [Bacillus anthracis str. A0248]
          Length = 776

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|158316649|ref|YP_001509157.1| hypothetical protein Franean1_4886 [Frankia sp. EAN1pec]
 gi|158112054|gb|ABW14251.1| conserved hypothetical protein [Frankia sp. EAN1pec]
          Length = 334

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 33/221 (14%)

Query: 757 LNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFTLP----------- 797
           L+PS         L            + ++   RG ++H +L+ +F LP           
Sbjct: 57  LSPSRAADFVNCPLRYRFRVVDRLPEAPSEAATRGTVVHGVLERLFDLPARSRTQPAATE 116

Query: 798 --EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
             E    + +                ++ L S   LL      T       +  +    +
Sbjct: 117 LVEPVWADLLARDPALGGLFDDDGALRSWLDSARDLL--AGYFTLEDPTRLAPAARELYV 174

Query: 856 NCPKK-DIIISGRIDQI--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
                  + + G +D++  + + Q   + + +YKT        E      + Q+  Y  +
Sbjct: 175 EHVLASGLRLRGYVDRLDSAETPQGTALRVIDYKTGRSPGPAFEGAA---MFQMRFYALV 231

Query: 911 LKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           L  S         L Y+S+     +              +I
Sbjct: 232 LWRSRGVIPRELRLYYLSDRT--WLRATPEESELRATERRI 270


>gi|320102498|ref|YP_004178089.1| hypothetical protein Isop_0951 [Isosphaera pallida ATCC 43644]
 gi|319749780|gb|ADV61540.1| hypothetical protein Isop_0951 [Isosphaera pallida ATCC 43644]
          Length = 1245

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 57/587 (9%), Positives = 139/587 (23%), Gaps = 118/587 (20%)

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
             +      SP  N  ++D F                 + A   ++     +  ++     
Sbjct: 545  DASRAATASPPRNLDQNDRF--------GRVRKARHARIALRVLNWLAARLAPLNAPRTR 596

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS---SLQELI 551
                   +     L   +            +    DE +       +       S  +  
Sbjct: 597  PAHLDALEEVAEALDLTQHTDHLHDWSRFRLALEEDELIVRIDAEARGQSPPSESWSDFA 656

Query: 552  SELEQYPPTIKRAHSAN-------HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            +  EQ    ++    +         ++  +MT+  A+GL++ VV + + G   F      
Sbjct: 657  NRAEQIARDVRFEPGSETGWDSDHPDQATLMTLGQARGLKAKVVMMANLGRGAFPSHRAA 716

Query: 605  KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ---EEYNRLLYVGMTRASDQ 661
            +  +             +      N          +++               +  A+  
Sbjct: 717  EALLANPFGGSAAGESELDAIAIDNESSVTDWFPTQETDNLAFAHEMAAFLRVVGTATHH 776

Query: 662  LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK--------------- 706
            LI+       +        + + V   F  +     I   +++ +               
Sbjct: 777  LILIYPKADLSGHPLQAAAFVEEVCRRFEPNLFPDPISRLDAVKEPNLCLTRSDRLVAAV 836

Query: 707  -----DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI-------------- 747
                  E          P         +     ++ +     F P               
Sbjct: 837  GHALRGEVDDLRRLARDPGFLGALTGTSRALESNQARWHDHEFGPYDGMICSEPLRRWIA 896

Query: 748  KNDINEPYILNPSTIDTKGKTNLE--------------SLLSDNQTFNRGLIIHKLLQVI 793
                 E ++ +P+ +++      +              S   +      G  IH +L+ +
Sbjct: 897  HTFAPEHWVFSPTQLESYLLCPFQFFARYVLGLITVENSDELEPDYTESGRTIHAVLEHV 956

Query: 794  FTLPEH---------KRKNFITSYCTKNAKLWPAKE---------------YKNLLLSIT 829
              +              K  +     +  +    K                 + L+    
Sbjct: 957  HKIHPEPLQLATPTQSWKQALERELEREVRHRLEKHDPPIHPVEAGLRRIYAERLVRQCR 1016

Query: 830  RLLEN-PMMTTAMSCDSYSEVSVSGKINCPK---------------KDIIISGRIDQISI 873
            R L                E  V  K                    + +++ G ID+I +
Sbjct: 1017 RYLNQLEDYLARAGRGVRFE-KVEAKFGERNIDGTLINPLILGKASERVVLQGTIDRIDV 1075

Query: 874  --SQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                        + +YK+ H     ++ +      QL +Y   ++  
Sbjct: 1076 KREPDKPTLSFRVLDYKSGHVP--SLKEVRERGAVQLPLYALAVERL 1120


>gi|242309696|ref|ZP_04808851.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523697|gb|EEQ63563.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 670

 Score = 68.8 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 57/490 (11%), Positives = 127/490 (25%), Gaps = 66/490 (13%)

Query: 446 FNFSEDDIFKICTQRH--ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                ++I  +           +++  + F      K Q       ++    +       
Sbjct: 180 RGIQPEEICIVLPSEEFKNYLELFDGARNFNFAMGKKLQET-ALFVKIEEHIEQFKDFGE 238

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIK 562
           F   +   +   +        ++  L+ F       E       +      L++      
Sbjct: 239 FQNFIIESQEITREDKEAKKIILQNLEHFSYSLKYLEFLPIKDKIHTFFMMLKKLSIDDI 298

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                    + ++ +   +G+E   + + +         + K + +   + +  G+P   
Sbjct: 299 -----GGGRISVIGILETRGIEFSYIIVPEFNENNVPKVNQKDIFLNSLIREKVGLPTKK 353

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
            +   +    S L +H  +        L       +   L     S     K S +   Y
Sbjct: 354 DRENLQKYYYSRLFEHSLEVGV---MFLNNDEDKPSRFLLDDKIFSEARFYKASKKYGDY 410

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            +   +    ER     L   I                        +  +L       +K
Sbjct: 411 FLSGKALQYKEREIVAPLELGIM-----------------------SASKLECLLTCARK 447

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
            +        E                       N   N G+ +HK+LQ       ++  
Sbjct: 448 YYYRYVLGYKEEN--------------------SNMGANVGMKLHKVLQ--EAYSSYQTH 485

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS------CDSYSEVSVSGKIN 856
           +       +  +     E K     +   L    +            + +  V    K +
Sbjct: 486 HNFAQLQEEVYRGLQDYETKREFFELE--LAKRYLQKFFKTEQEHLQEGWIPVEFERKFS 543

Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHH-HVPQEIEHIPYTHIAQLSIYEKILKDSY 915
                I   GRID+I    Q+ F+ +YK            I  +   QL +Y   +++ +
Sbjct: 544 FGVCGIPFEGRIDRIDKKGQDFFVLDYKYKRNLKIGSKRSIENSKDFQLVLYAMAIQEIH 603

Query: 916 PNKSLVCLLI 925
            N  +     
Sbjct: 604 SNAEVKAGFY 613


>gi|288803267|ref|ZP_06408701.1| DNA helicase [Prevotella melaninogenica D18]
 gi|288334308|gb|EFC72749.1| DNA helicase [Prevotella melaninogenica D18]
          Length = 502

 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 65/213 (30%), Gaps = 38/213 (17%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY------LNAHYEEAKK 142
           +NK S    E++   + +    R  +   K     ++    A        +   Y E  K
Sbjct: 143 LNKSSDFFLEEISWIKGKLFNSRTEYLEAKRIGRGISDRVTASDKETIWSIYTMYSEELK 202

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
                DF+D  I +   ++            +    HI+IDE QD +  Q  VI  L   
Sbjct: 203 NRGKKDFDDYAIISLQKIENDSS-------WEPPFTHIIIDEAQDLNKAQILVISKLVSQ 255

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIY--SFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
                +          + D  Q IY   F  +E    +R                  IE 
Sbjct: 256 ETESIS---------IIADAAQRIYKSGFTWSEVGLNVR--------------GGRTIEF 292

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
             ++R++  I      +    E+    +   T 
Sbjct: 293 KKNYRNSVHIARAALSLLENEEDKSEFTVVETA 325


>gi|169335597|ref|ZP_02862790.1| hypothetical protein ANASTE_02012 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258335|gb|EDS72301.1| hypothetical protein ANASTE_02012 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1111

 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 87/746 (11%), Positives = 198/746 (26%), Gaps = 127/746 (17%)

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWT 330
           L   +        +  + +D+   ++  +    +    ++ ++   + D +         
Sbjct: 228 LFTTNTKEDTNNESYRIIDDTLYKLKKLAENNDEEVVTEIDKEDEKEKDIKFLADNIFSY 287

Query: 331 SYFDSLPQ-ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                  +  +     A  I   +   +    I    K+     KDI VL     D    
Sbjct: 288 DTKTFDDEINNIEIFKASTIYEEVE--MTALNILKLIKEENADFKDIQVLP---SDYDTY 342

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
             +       + IS   ++   + D   ++ ++ +   +         +  LK+ L + S
Sbjct: 343 KEIISETFKKHNISFFLDNTTSIMDTNILRGILKILNIVEGNFKTHDIISFLKTGLTDLS 402

Query: 450 EDDIF--------------KICTQRHETETVYEYIQKFANCGISKF-QHVIKYIHELIHI 494
           + DI                            EY   + N    +    +I   ++L   
Sbjct: 403 KTDIETFENYALEFGIKGTMWTADFKRNNPDNEYDLAYLNEKKDELMLPLITLRNDLKDK 462

Query: 495 AQFCSPHDFFTLILGAKKGRQQFI----SRFGNEVIDVLDEF----------LNFTLRNE 540
                  + F   L      ++ I         E  +  +++          L       
Sbjct: 463 TSVKEITNIFYDFLEEFGLYEKIITLVNKFKYKEDFENANKYAQIHNSIITALEQIYDFL 522

Query: 541 QNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            N   SL E    LE            +  + V I ++  ++  E   +F++     V  
Sbjct: 523 GNEELSLSEYTKVLESGFNALKIGIIPSTIDSVNIASLSRSRSSEIKYLFILGVNDGVLP 582

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                            GI     + K+ N  ++  ++  ++   +E    L   + +  
Sbjct: 583 SNFSNS----------GGIFSNKEKLKAINEGIN--LRTTEQYKIDEERYFLTSVILKTE 630

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            ++ +      SN  +    +    + D+    +     K     N      YE +  + 
Sbjct: 631 KKIFLSYPITGSNGDELLPSSIIFKIQDTMPKLKVKTLDKNNFEDNLSLISNYEATFKYL 690

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIK---------------------------NDIN 752
            N  L +  + K       +        K                               
Sbjct: 691 LNNKLHKNSSYKVNTLWDTLYDLYKEDDKGKYLIDIMNSALSFNNKAVIKNKKLIDEIYK 750

Query: 753 EPYILNPSTIDTKGKTNLESLLS-DNQTFNR----------GLIIHKLLQVIFTLPEHKR 801
              + + S ++T  K      +S   +   R          G I+H+++          +
Sbjct: 751 GEIVTSISRLETYAKCPFSYFVSYALKPKERKKNEINKPDIGNILHEIISEFSRK-IIDK 809

Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLS-----ITRLLENPMMT-TAMSCDSYS------EV 849
           +    +      +         ++          ++ +       +   SYS      E+
Sbjct: 810 EIKPENIEKAEVEKISFDITSEIIDKYSSGKFKNIINSAYFKNKLLRNASYSLNTIISEL 869

Query: 850 --------SVSGKINCPKKDII-----------ISGRIDQI--SISQQNIF--IFEYKTH 886
                   S   K +   +  I           I G ID++      +  +  + +YKT 
Sbjct: 870 NRSNFKITSTESKFSEENEGAIKIVTNKNHLMTIHGIIDRVDTYEDDKGRYVKVIDYKTG 929

Query: 887 HHVPQEIEHIPYTH--IAQLSIYEKI 910
                  + I   +    QL IY   
Sbjct: 930 ---NATFDFIKSYYGISMQLPIYLTA 952


>gi|146298459|ref|YP_001193050.1| hypothetical protein Fjoh_0696 [Flavobacterium johnsoniae UW101]
 gi|146152877|gb|ABQ03731.1| hypothetical protein Fjoh_0696 [Flavobacterium johnsoniae UW101]
          Length = 919

 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/457 (10%), Positives = 123/457 (26%), Gaps = 68/457 (14%)

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELISELEQYPPTI 561
                       ++    F   V  V+++ +N+  +++  ++  +L  +  ++       
Sbjct: 443 LIKQSFSNDNEEEKIAKTFVYAVFKVINKLINYYSQHKHIDNIDTLHAIYKQIIDVAEVS 502

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                     ++IM V  ++ L+   V +       F     +   I   +  + G+P +
Sbjct: 503 F--EGEPLRGLQIMGVLESRVLDFDTVIVTSMNEGKFPAGKSQNSFIPYDVKKELGLPTF 560

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
                 ++ I +                  Y  + RA +  +I    N   +     R  
Sbjct: 561 K----EKDAIYTYH---------------FYHLLQRAKNIYLIYNTENDGLDAGERSRFI 601

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             +         R        +                +      +E          +  
Sbjct: 602 TQL---EVEKKSRHNLTFDIYNPVLPTTAYLPMVIPKSDAVMERLKEIALSGFSPSALTS 658

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT------ 795
            + +P +    +   +       +                 G IIH+ L+ ++       
Sbjct: 659 YIRNPTEFYFQKILRIREVEEVEENIALN----------TLGTIIHETLKALYDPFVEKF 708

Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------------MMTTAMSC 843
           + E    N       +  K +     +  +     LL                + +  + 
Sbjct: 709 ISESDILNCFKLLDDEVLKQFKLVYKEGEIKKGRNLLAFEVAKRNVSNFLKIELESIKNG 768

Query: 844 DSYSEVSVSGKINCPKK------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEI---- 893
           D+   +++                ++I G +D+I +    I I +YKT       I    
Sbjct: 769 DTIKIIALEKTFERELVHSELPFPVLIKGNVDRIELRNGKIRIVDYKTGKVEKTNIVLKS 828

Query: 894 -----EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
                + +    I Q+  Y  + +       +   +I
Sbjct: 829 WNGLTQELKNDKIIQVLAYAFMYEQLAGETPIEVGII 865


>gi|325279041|ref|YP_004251583.1| ATP-dependent DNA helicase, RecQ family [Odoribacter splanchnicus DSM
            20712]
 gi|324310850|gb|ADY31403.1| ATP-dependent DNA helicase, RecQ family [Odoribacter splanchnicus DSM
            20712]
          Length = 1655

 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD  + +  ++++L          ++    + AVGD+ Q+IY F G++   + R
Sbjct: 1225 LVIDEAQDMGVAEHALVKALM--------ANNEEMRVIAVGDDDQNIYEFRGSDSGYMYR 1276

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
              +    +          IE+  ++RS   ++   +K   +    
Sbjct: 1277 LAQEPGSKF---------IEMTENYRSARHLVDFTNKFVKVLGKR 1312


>gi|160872018|ref|ZP_02062150.1| conserved hypothetical protein [Rickettsiella grylli]
 gi|159120817|gb|EDP46155.1| conserved hypothetical protein [Rickettsiella grylli]
          Length = 889

 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 70/578 (12%), Positives = 152/578 (26%), Gaps = 86/578 (14%)

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKI---SVVGNDRFILTDHLAIKDLMALGRFILSQE 432
           I  LV +R     I          + I            L +   I+  + +        
Sbjct: 246 IPHLVERRTHLLTIFTDIFTECAPHSIDPPPFNIAAGNPLLEFGLIQTALLILDLKA-IN 304

Query: 433 DDLSFVCMLKSPLFNFSEDD------IFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
              S   +L+SP     + +      +           ++ + I              +K
Sbjct: 305 TFSSLHSLLRSPYIGGFQREQSPRASLDIFLRGAENRLSLNQLITISEEQTCFILSRSLK 364

Query: 487 YIHELIHIAQFCSPHD-------FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT--L 537
            +  LI                 F   +        +   R   +++D   E L     L
Sbjct: 365 TLLGLIKKYTCHFLAKPSFWSAYFVKKLHAFSWPGDRPFIREEYQLLDCWSELLTAFAGL 424

Query: 538 RN---EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
                E +  ++L+ L   +      +K  H      ++++ +  A G+    ++++   
Sbjct: 425 DFILGEISHDTALRHLRCHIANTLFQMKTLHDDPP--IQVLGLLDAAGMYFDELWVMGFD 482

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
            + +         I  +L     IP    + +     +                      
Sbjct: 483 DKTWPAPAKPNPFIPYALQRGQPIPSSSSEREYYFAAMLTKNLTAHAKKL---------I 533

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
            + A   L          ++      +   + +   ND  +           +      +
Sbjct: 534 FSTAKQHL----------DETLRPSVFIQSLPEIKLNDLHLPPYSTMAKKIMESQEWEYY 583

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
           S      T        + L  +   P + F+  +                          
Sbjct: 584 SDECIALTEDNFISGTQLLQSQAACPFQAFARWRL--------------KARTHPFFPQN 629

Query: 775 SDNQTFNRGLIIHKLLQV----------IFTLPEHKRKNFITSYCTKNAKLWPAK----- 819
           +      RG++ H++L+           + +L +H     I        K+W  K     
Sbjct: 630 NGLDARERGILFHRVLEQFWNKIKNQETLLSLTQHALNQHIHDAINTCLKIWSKKRPIIF 689

Query: 820 -------EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
                  E + L   ++ L++        S   +       K +      I+S RID+I 
Sbjct: 690 KTYFATLERQRLSSLLSTLIDLEKQRPHFSETQH-----EKKQHLKLGPFILSLRIDRID 744

Query: 873 -ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
            +   +  I +YKT      +       +  QL +Y  
Sbjct: 745 KLDGNDAMIIDYKTSRPQKIDWLDERCDY-PQLPLYCL 781


>gi|73670049|ref|YP_306064.1| hypothetical protein Mbar_A2573 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397211|gb|AAZ71484.1| hypothetical protein Mbar_A2573 [Methanosarcina barkeri str.
           Fusaro]
          Length = 260

 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 133 LNAHYEEA----KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT 188
           L+  Y +A     +++  L   D       LL+K      I   I       LIDE QDT
Sbjct: 161 LSHRYCKASKIQLRQSGYLTQADANFFVMKLLEKYPD---IAKAIVYRFPVFLIDEAQDT 217

Query: 189 SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           S +Q ++   L E+             L  +GD  Q+IY +  A P+  +R+
Sbjct: 218 SDVQMKIFDLLLENGLE---------RLMLIGDPNQAIYEWRTANPEVFIRK 260


>gi|78212327|ref|YP_381106.1| hypothetical protein Syncc9605_0782 [Synechococcus sp. CC9605]
 gi|78196786|gb|ABB34551.1| hypothetical protein Syncc9605_0782 [Synechococcus sp. CC9605]
          Length = 280

 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 52/165 (31%), Gaps = 29/165 (17%)

Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
            + +++      ++  RG  +H  ++      +H        +             ++L+
Sbjct: 84  SEPDIDHDAVTRESAKRGTAVHLAMESWLQSEDHTPVEEHLQWIN---------PLQSLV 134

Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
              ++ L               EV +   IN         G  D + +   ++ + +YKT
Sbjct: 135 SRASKTLA-------------VEVPLHYSINGVGAYA---GSCDGVMLVNGDVVLIDYKT 178

Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK---SL-VCLLIY 926
             H     +        QL+ Y   +   Y ++    +    L++
Sbjct: 179 KRHGKSVHQKYCEKERLQLAAYSLAISHLYEDQLPAPVTRTSLLF 223


>gi|303233886|ref|ZP_07320535.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302494811|gb|EFL54568.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 892

 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 76/674 (11%), Positives = 191/674 (28%), Gaps = 73/674 (10%)

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ---CNPQQESWTS 331
           +      ++           I     +  +   + ++  V   ++ +    N  Q+    
Sbjct: 169 NFNIQNNKDIYIHGFSEFRPIELEIIKQLKNYDINVYVFVDYYNEYKSKLANQLQDIGFE 228

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLI 389
              +  + +    + +++    + ++  D +         +     + +L+ K       
Sbjct: 229 VVQNDEKSNPNKFIEKKVVKLTNEILEKDRLIDEIANDSYIYDYNKMAILLEKDSSKR-- 286

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
             +   LK  + I V G+D     D+    D++ L     ++        +L S    F 
Sbjct: 287 -EILNTLKL-HDIPVFGDDYISYRDYKIFSDIINLLD--KNRSFKQYIFSLLDSCFLEFD 342

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ------FCSPHDF 503
             D         + +       +        +   ++ + ++                + 
Sbjct: 343 LKDKINFRNILSDFDFDKWEDLEKILKLNVNYGTNLEILEKIKSYYHSFIEKDNMILSNL 402

Query: 504 FTLILGAKKGRQ--QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
             L+   +      +  +     +++ LD+     ++  +N  S L +LI  L+      
Sbjct: 403 IELVQQKESEDVGFKLFAEKLLIILEDLDKTYAELVKKSKNINSYLIDLIKNLKVDSTDY 462

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                   + +RI ++   +     V+++V+    V   K                    
Sbjct: 463 LV------DGIRIYSLTDIRLSNYDVLYVVNMNDDVIPGKMNYDFFNNEDNIVFLQNNGI 516

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
              S + N   +        S  +    L Y   +    +LI+ K+   + +        
Sbjct: 517 DILSDADNRRRNIDRFIDAVSRADRKIYLSYNTESNVKSRLILDKNIKQNQKIAKINSQN 576

Query: 682 YDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
              V     +     +K  L   +N+ E           E      +  + + +   K+ 
Sbjct: 577 IKKVDTKKLHSISVYEKYSLKQHLNRIESRISSKDISDFEVDDKTTQYILNKELSSTKLE 636

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                P+K        L P                     + G I+H  L+  + +   +
Sbjct: 637 TYFECPMKFYFRYYLKLRPQIKSRL--------------LDIGTILHNTLEEFYGINISQ 682

Query: 801 RKNFITSYCTKNAKLWP-------------------AKEYKNLLLSITRLLENPMMTTAM 841
            K+ I   C  +                          +Y+  L  +   +   +     
Sbjct: 683 IKDAIDGKCELDISSLDGLLKNSFEKFGLNTDIKENEFDYEKYLNKLKDFVRTDIY---- 738

Query: 842 SCDSYSEVSVSGKINCPKKDII-------ISGRIDQISISQ-QNIFIFEYKTHHHVPQEI 893
             +  +E          +  II        +GRID++  +    I + +YK   +  ++ 
Sbjct: 739 --NMKNEREKFYPFKLEEDFIISLDESTKFTGRIDRVDKTDSGKIRLIDYKLSKNSFRKA 796

Query: 894 EHIPYTHIAQLSIY 907
           + +      Q +IY
Sbjct: 797 KDLDKNKGFQFAIY 810


>gi|226314560|ref|YP_002774456.1| ATP-dependent nuclease subunit B [Brevibacillus brevis NBRC 100599]
 gi|226097510|dbj|BAH45952.1| ATP-dependent nuclease subunit B [Brevibacillus brevis NBRC 100599]
          Length = 1165

 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 65/659 (9%), Positives = 175/659 (26%), Gaps = 136/659 (20%)

Query: 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
           ++   + KD+ +L+R   +          +  +Y I    + +  +  H  ++ + +   
Sbjct: 332 REEGYRWKDMAILLR---EIGTYADEISAVFTEYGIPHFLDQKRSVMHHPLVELVRSALE 388

Query: 427 FILSQEDDLSFVCMLKSPL---------------------------FNFSEDDIFKICTQ 459
            I+++    +    LK+ L                           F +   +      +
Sbjct: 389 VIVTRWRYDAVFRCLKTDLLLLDITDEHTARKEIDRLENYVLAHGVFGYQWAEESPWHFR 448

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL-----GAKKGR 514
                     I +      +      K + +   +         + L++        +  
Sbjct: 449 GQAGAEEDAQIDELRRKYAAPLLSFEKEMKQATGLNVQEMTLALYNLLIALDVPNKLEHW 508

Query: 515 QQFISRFGN--------EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           Q+     G+        +V   L E ++  +    +   +L      L+    TI+    
Sbjct: 509 QRKAENDGDLDAAQVHGQVWTGLIELMDQVVEVMGDESMNLATFARVLDSGLETIELGLV 568

Query: 567 ANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               ++V I  +  ++  +   +FL+     +   +  ++  +  +  +           
Sbjct: 569 PPALDQVLIGAMERSRQPDVKALFLLGVNEGIIPLRPKEEGILDEAERERLAEMGMSLAP 628

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
            ++  ++++               LLY  MTR S++LI+         K     + +  +
Sbjct: 629 SAKQKLMAEPY-------------LLYQAMTRPSERLILSCALADEEGKALLPSSVFTRI 675

Query: 686 YDSFHNDERVKKIKLTNSINKDEW---IAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            +   +              + +            H        ++T +      ++   
Sbjct: 676 REVLPDIPHQVFYNEPTGQYETDAFLLGHPRRVFRHLLTLLRSMKKTGELPDFWWEVYDW 735

Query: 743 LFSPIKNDINEPYIL---------------------------NPSTIDTKGKTNLESLLS 775
                 +   E ++L                           + S ++           S
Sbjct: 736 YIRASPDVKREQWLLSGLRYFNRPQELDLETSTTLYGKQLKMSVSRLERFQSCPFSHFSS 795

Query: 776 -----------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT-------SYCTKNAKLWP 817
                        + F+ G + H  L+            +                +   
Sbjct: 796 HGLRLAERTMYKLERFDVGELFHASLKRAVEKMNEDNLEWSKLTEDNSMQLANVVVEELV 855

Query: 818 AKEYKNLLLSITRL------LENPMMTTA--MSCDSYS--------EVSV---------S 852
                ++L    R       L+  +      +   +          EVS          +
Sbjct: 856 PATRSSILTRTARYRYLSGKLKRAVGRAIYVLGEHAKRSRFAPVGLEVSFGPNSDLPGLA 915

Query: 853 GKINCPKKDIIISGRIDQISIS-QQNI---FIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
             +    +  +I GRID++  S    +    + +YK+       +  +      QL +Y
Sbjct: 916 LTLENGVELQLI-GRIDRVDQSLDSEVPYLRVIDYKSS-PKQLSLSDVWNGLNLQLLVY 972


>gi|188584139|ref|YP_001927584.1| double-strand break repair protein AddB [Methylobacterium populi
           BJ001]
 gi|179347637|gb|ACB83049.1| double-strand break repair protein AddB [Methylobacterium populi
           BJ001]
          Length = 1045

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/441 (9%), Positives = 100/441 (22%), Gaps = 45/441 (10%)

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
           ++  +   +            +   I                    G  +      +  +
Sbjct: 517 WDLSENILDRLEIALDRFRTDLQPAIGNLVA--LAALHREACERMMGGAETEEEIDDPSL 574

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISEL---EQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
           D LD   +     EQ +        +          T+  A    H  +RI+    A+ L
Sbjct: 575 DTLDGLFDDLESAEQEALPGRFSDYAAFFTALARDRTVACAQGNAHPRLRILGPLEARLL 634

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
               + L      V+  +      +   +    G+     +     +     +       
Sbjct: 635 SVDRIVLGGLDEAVWPVRQTTDAFLNRPMRGQVGLSPPERRIGQAAHDFVQGLGIHDA-- 692

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
                              ++ + +          R    +                  +
Sbjct: 693 -------------------VVTRAAKREGSPTVPSRFLQRLRAFGGDAVWA-------GA 726

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
           I + + +    +             T      +  +     S  + +       +     
Sbjct: 727 IARGQRLRGLAAILDRGREAPPPRLTRPAPKPDPALFPSRLSVTEIETLVRDPYSIFARH 786

Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHKRKNFITSY-------CTKN 812
             G   LE +        RG +IHK+L    Q          +  + +            
Sbjct: 787 ILGLEALEPMAVVPGAAERGSLIHKILGDFSQAHPGPLPADAETLLYAIALDAFGPLQDQ 846

Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI- 871
                A+ +          LE            ++E S    I   ++   +S R D+I 
Sbjct: 847 YPELYAEWFPRYERMAVAFLEWEASQRQGLRAIHAERSGKLTIPLGERTFTLSARADRIE 906

Query: 872 SISQQNIFIFEYKTHHHVPQE 892
             +     I ++KT       
Sbjct: 907 VRADGGYCIVDFKTGTPPSNR 927


>gi|291536958|emb|CBL10070.1| Superfamily I DNA and RNA helicases [Roseburia intestinalis M50/1]
          Length = 689

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 96/680 (14%), Positives = 196/680 (28%), Gaps = 118/680 (17%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQ------ 54
           +K++ G+S       I++ +W +   Q S +       +   +   L  +Q L       
Sbjct: 80  IKHQLGVSDVVEISTIHERIWSIICSQKSALLGLHIEKL--NSEVELLNSQLLSNSEYEK 137

Query: 55  -QASQTQCIEERFSLLSS------FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF 107
            +A      E  F L+             K T  K  + +EI  +  +L   + K +   
Sbjct: 138 YRALDASAQERFFQLMLENKKKYNMAYNLKATEFKAAMPEEIRLQYAELISNVSKFKGLV 197

Query: 108 IKIRDRFNTYKMF---KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
            K+  R          +S      +    +A Y   +     +  + L+    +L+++  
Sbjct: 198 DKLFKRKRYLDCLCKIESGEKDYRVVN-YDAMYNRDRLDKMRISHDTLLEYGYELIERYP 256

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               +R  I  +  +ILIDE QDT     +++  +                +   GD  Q
Sbjct: 257 ---RMRQLIIDKYPYILIDEYQDT----ADIVVKIMSLIEQYAKQIKHDVFIAYFGDSVQ 309

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           +IY                  +R T    +   +    + RS  +++ V ++V       
Sbjct: 310 NIYDAG-------------VGERLTRLHPELDFVLKEYNRRSYIEVIDVANRV------- 349

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
                 +   ++         G V+L+               E W+   ++      A+ 
Sbjct: 350 -----RNDEVVQKSIYSDCSGGDVKLYYGSGENVSEFIEKCAEKWSVQIENPLHCMFAT- 403

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
                               +G   V +A     + R      L + L           V
Sbjct: 404 -------------NQMVAEYSGFPNVYEAFKRAEIYRGIGYKQLNSELLSHDIIHLG-RV 449

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
                 ++  +  +++     R IL   D    +  L   L   S   I          E
Sbjct: 450 QAILYRLIKIYTEVREEKQPLRDIL-PSDKYRNMSFLDLKLLIASLRAID----GNTLDE 504

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            + +   +++      ++ V++ I ++     +      F   L               E
Sbjct: 505 LLGKIFNEYSMSNHQMYKLVMEKIFDVDEDLSYDKVLAIFVTSLYKSW-------DETLE 557

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             +++ + L+  L         L      + +              ++   T H+ KGLE
Sbjct: 558 SKEIIHDLLDIKLE-------ELLNWFHYIHRD----------EKKKICYHTFHSTKGLE 600

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V ++            K   +    N                       +       
Sbjct: 601 YENVAIILGKDFGQDKDLFKYYFMNYEGN-----------------------EEQDSDKY 637

Query: 645 EEYNRLLYVGMTRASDQLII 664
           E+   +LYV +TRA   L +
Sbjct: 638 EKGRNILYVAITRAIKNLRV 657


>gi|282598672|ref|YP_003358769.1| gp66 [Mycobacterium phage Peaches]
 gi|255928199|gb|ACU41817.1| gp66 [Mycobacterium phage Peaches]
          Length = 263

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/213 (8%), Positives = 56/213 (26%), Gaps = 49/213 (23%)

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
           ++   +  S +K     PY    S +D   +               G  +H+ ++     
Sbjct: 3   EERKHRSVSQLKQYEKCPYSYKLSRLDKAWQRPAAWTAQ-------GSAVHEAIEAWERS 55

Query: 797 PEHKRKNFITSYCT------------------------KNAKLWPAKEYKNL-LLSITRL 831
                     +                           +           ++ L  + + 
Sbjct: 56  GRTMSLEAAQAVFRESYQKYINAACAITPNFEYWFASGRYGGRLDIARRYDIGLEQVGKY 115

Query: 832 LE-----NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
           ++        +       +     +    +     +++ G ID +  + + + + ++KT 
Sbjct: 116 IDWATSHTEEVIWIAPDGTP---GIELGFDIDLDGVLVRGFIDAVIETDEGLIVRDHKTG 172

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
                +          QL++Y   L + Y  + 
Sbjct: 173 KQPGDD---------FQLAVYAVALAEEYGIEP 196


>gi|255534060|ref|YP_003094432.1| ATP-dependent nuclease subunit B [Pedobacter heparinus DSM 2366]
 gi|255347044|gb|ACU06370.1| ATP-dependent nuclease subunit B [Pedobacter heparinus DSM 2366]
          Length = 951

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 60/483 (12%), Positives = 129/483 (26%), Gaps = 75/483 (15%)

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
             L  PL    +    KI T     E   E            F+   K +  L       
Sbjct: 393 AFLTHPLTGLRQAMRDKINTAL-LAEKEIEVPYTRLVNQKGLFEVFFKKL--LHAGEVME 449

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQY 557
              +    +L                    + E         ++  +  +  +IS +++ 
Sbjct: 450 QLLEVMNFVLARLSHAGNLKKIDAELFAKAIQELNRLYDTFGKHVDHEEIPFIISLVQKA 509

Query: 558 PPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
              +    S +    +++M +   + L    V ++     +     +    I  S+    
Sbjct: 510 VMGLAVPLSGDPLKGIQVMGLLETRNLNFDKVVMLGFNEGIVPKSSVGNSFIPDSIRRVY 569

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
           G+P+                    ++       ++Y  + RASD   +            
Sbjct: 570 GLPV-------------------LENQDAISAYMVYRLIQRASDVSFVYNSLTDDATSGE 610

Query: 677 NQR-----TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
             R      +      ++H  +   + +    I   +                ++  +  
Sbjct: 611 PSRILKQLAYESGFEFNYHTLDLNVRTEPLKEITIKKEGNEAIQQGLQRYLNKQKTLSPS 670

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
            L      P   F      I EP  ++                   +    G I+HK+++
Sbjct: 671 ALTQYILNPIDFFFNYIAGIKEPKEISAVV----------------EANEVGSILHKVME 714

Query: 792 V-----------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL-------- 832
                       +  L E ++K    +     A ++   E +     + +++        
Sbjct: 715 YFYKDCIRQEITLPLLKEKRKKIPALTQKAFAAVIFNNPEKQAEFKGMQKVILAIVEAYV 774

Query: 833 -----ENPMMTTAMSCDSYSEVSVSGKINCPKKDI----IISGRIDQISISQQNIFIFEY 883
                ++   T  M      E  V   I+ P         I G ID++ +      I +Y
Sbjct: 775 NIIVSQDERQTPFMIESL--EQWVEADISFPLGGRAASIRIGGIIDRVDLKDGITRIIDY 832

Query: 884 KTH 886
           KT 
Sbjct: 833 KTG 835


>gi|324991606|gb|EGC23539.1| exonuclease RexB [Streptococcus sanguinis SK353]
          Length = 1093

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 90/861 (10%), Positives = 222/861 (25%), Gaps = 117/861 (13%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
           LI  T   L   ++  + R K D +    L+D   +    Q         +F        
Sbjct: 89  LIYRTLTELDDGELKVYGRIKKDAQFIQQLMDLYHELKTAQMSFADL---EFLEEPEKRE 145

Query: 212 SPRTLFAV-------GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
               +F         GD   S      A+           +  A      F+       +
Sbjct: 146 DLVKIFTAVTAALNKGDFDSSSQIAAFAQHILAGDTDEELENLALVIDG-FTRFSAEEEY 204

Query: 265 ------RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
                 R   +I+  +    S         E +         R          + +    
Sbjct: 205 LVGLLHRKGVEIV--IGTYASQKAYRAAFREGNLYQASVDFLRKLAESYQVKPDYIPHAE 262

Query: 319 DSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS-------NGKKRVI 371
                 +            + + A     R    I   +                    +
Sbjct: 263 AEDAFGRISKILESRYDFSEPAVAVSETDRSRLQIWATMNQKEELEYVAKSIRQRVHDGV 322

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           + KDI +L+    D        + + + Y+I         +  H  ++ + +L R     
Sbjct: 323 RYKDIRLLL---GDVEAYQLQLKTIFDHYQIPYYLGRSESMAQHPLVQFVESLERLKRYN 379

Query: 432 EDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
                 + +LK+ L+   +++++          +              S+ +  + +++ 
Sbjct: 380 FQLEDLLNLLKTGLYGDLTQEELDYFEQYLRFADIKGAGKLAKDFTANSQGKFDLDHLNH 439

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQE 549
           +           F +    A     +F          D L   L    + EQ  +  + +
Sbjct: 440 IRRRIMTPMQDFFKSRSQTASGLLAKFTEFVQIARLSDNLIALLQGDSQQEQERHEEVWK 499

Query: 550 LISELEQYPPTIKRAH-----------------------SANHNEVRIMTVHTAKGLESP 586
             S + +    +                            A  + V++ +    + L +P
Sbjct: 500 AFSHVLEQFAQVFADSKVKLDDFLALILSGMLLSNYRTVPATVDVVKVQSYDLIEPLAAP 559

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSL----------NDDPGIPIWIPQSKSRNNIVSDLI 636
            V+ +    + F      K  +                +  I       K+R   +S + 
Sbjct: 560 YVYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAELQIASSENLKKNRYTALSLIN 619

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKH-------SNTSNEKKSNQRTWYDMVYDSF 689
              K+        +  V  + ++  L +                   +  ++  ++    
Sbjct: 620 SSTKELVLSAPALVNEVEDSMSTYLLELTAAPLSLPIIVKKPQASSDDIGSYRALLSQII 679

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
              +     + T        +A            +   +  K+L  E   P+ L +    
Sbjct: 680 ELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPQISKELKTESLQPETLQALYPQ 739

Query: 750 DINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVI--FTL 796
           +  +P  L+ S ++                  E         + G+ +H++ + +     
Sbjct: 740 E--QPLRLSASALNEYFLHQYAYFLKYVLRLQEEWTIHPDARSHGIFLHRIFEKVLQDDS 797

Query: 797 PEHKRKNFITSYCTKNAKLWPAK----------EYKNLLLSITR---LLENPMMTTAMSC 843
                +    +    + +                 + LL +      +L +P     +  
Sbjct: 798 SADFDRRLARAMEETSRETEFESIYSESGQTRFARQLLLDTARATGHVLAHPSGIETIGE 857

Query: 844 DSY---SEVSVSGKINCPKKD-IIISGRIDQISISQQNIF------IFEYKTHHHVPQEI 893
           ++    +       +       + +SG++D+I      +       + +YK+        
Sbjct: 858 ETGFGSASKPF---LTLENGRAVTVSGKVDRI----DRLTKTESLGVVDYKSGDIKF-SF 909

Query: 894 EHIPYTHIAQLSIYEKILKDS 914
           E       +QL  Y   +++ 
Sbjct: 910 EKFFNGLNSQLPTYLAAIEEL 930


>gi|91200828|emb|CAJ73882.1| hypothetical protein kuste3125 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1099

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 90/818 (11%), Positives = 223/818 (27%), Gaps = 178/818 (21%)

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV----VDKVFSIPENAQGL 287
           A+ + + + K I      +             FR    IL +       VF+  ++    
Sbjct: 190 ADSEYLRKFKYILAYGFYDL-TGVEQDFFSEIFRYYPTILFLPYKKNHAVFTYVKHFYES 248

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                             G   L +       S          S  +      S      
Sbjct: 249 FLLGIARDIEDLPPDDLQGFSYLMDADSETKTSLHGESMPDAPSLDNLSIINVSGKHDEI 308

Query: 348 R-IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             IA  I  +I    +            DI ++ R+         + + +  +  I    
Sbjct: 309 WVIAKEILKLINKGYV----------FGDIGIVARELGQ---YLNIIQEVFQENAIPFTT 355

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI---------- 456
            D+  +  +     +  L             + +L+SP FN    ++  +          
Sbjct: 356 LDKEPIEKYPLFTMIKQLLLLDRENFYRPMVIDILESPYFNIPVPELKDVLSRQNLWDII 415

Query: 457 ----------------------CTQRHETETVYEYIQKFANCGISKFQHVIKYI-HELIH 493
                                        E +  +    +   I   +++++ + ++L+ 
Sbjct: 416 SRTNGIHSGIRCWLSKLEQLKNAMAEPAEEDILPHNINISCDQIESLKNIVQLLSNDLLS 475

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
           + +  +               + F+ ++ +   + +D+ +       +     L + +S 
Sbjct: 476 LQEKATWSQMCQK-------TKLFLDKYIHIPSEDIDQEIIKRDIFIKERIFCLFDTLSI 528

Query: 554 LEQYPPTIKRAHSAN-----------------HNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
           L++    I     A+                 +  VR+M   +A+G+   ++FLV    +
Sbjct: 529 LDRIDKEITYDQFADTFINACKQEGIQAGTANNKGVRVMNAMSARGIPFRILFLVGLNEK 588

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            F     ++  +               +      + + + +  K    EE   L Y  + 
Sbjct: 589 EFPRAIFEEPFLPDHT-----------RRILSEALGNHIPE--KLRGFEEERLLFYFLLN 635

Query: 657 RASDQLIICKHS-NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
            A +++ +     + + + K+      D++ +      R +  +  + +  +   + +  
Sbjct: 636 AAQERIYLLYERSDEAGKPKTPSHYIMDILQNIKGIHTRNEDKENKSPVKMNVPRSIKNK 695

Query: 716 THHPENTPLEREETIKQLMDEQKIPK-----------------------KLFSPIKNDIN 752
               + + L   E + +++ E   P                        + FSP  +  +
Sbjct: 696 LCKEDISLLTPNEAVIRMVLEHIDPSCCINAIGGNLAAYTRSKSALQAIECFSPYLSAYD 755

Query: 753 EPYI-------------LNPSTIDTKGKTNL----------ESLLSDNQT-----FNRGL 784
                             NP+ ++T G              E L    +         G 
Sbjct: 756 GIVSDGEHWYKNRVQKGFNPTMLETFGACPFQFFMREILQLEPLEEPEKGETISLPKLGT 815

Query: 785 IIHKLLQVI-----------FTLPEHKRKNFITSYCTK-----------NAKLWPAKEYK 822
           I H++L  +               +     ++     +              L    +  
Sbjct: 816 IYHEILDTLYCHLKEKGYFDGKAADTNPVEYLHKIANESFVKMGKQIPIPYPLLWELKKD 875

Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD--------IIISGRIDQISIS 874
            ++ ++   L    +        YS   +  ++              I   G+ID+I + 
Sbjct: 876 EIVAALIHFLSW-DIKQI-EHTGYSPAFLEARLQLALPKGKFEDYPAIFFKGKIDRIDVK 933

Query: 875 --QQNIF--IFEYKTHHHVPQEIEHIPY-THIAQLSIY 907
              Q I+  + +YK+     + +          QL  Y
Sbjct: 934 KSGQEIYFRLVDYKSGKAGTEHLLKAAVCGQKLQLPFY 971


>gi|171911303|ref|ZP_02926773.1| hypothetical protein VspiD_09015 [Verrucomicrobium spinosum DSM
           4136]
          Length = 558

 Score = 68.4 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 25/185 (13%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              +  +DL+   + + +   + + +   +      I +DE QDT     +VI  L +  
Sbjct: 143 EGRIFHDDLLGVAHFMFRDHFMLSKV---VAARFPFIFVDEYQDTDP---QVISILLDHL 196

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
               +    P  L   GD+ Q+IY+                 + + +       I+   +
Sbjct: 197 IKTDS----PPLLGFFGDKMQNIYTGG-------------VGELSPDHQSMLVQIKKEEN 239

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           +R +  ++ +++KV +        +  S   +       G    V L    V +   +  
Sbjct: 240 YRCSKAVINLLNKVRTDIRQEPAGNNLSGGAVYLN--FAGIDPAVDLTRMEVQKVREKFY 297

Query: 324 PQQES 328
            + E 
Sbjct: 298 WELEG 302


>gi|298290317|ref|YP_003692256.1| double-strand break repair protein AddB [Starkeya novella DSM 506]
 gi|296926828|gb|ADH87637.1| double-strand break repair protein AddB [Starkeya novella DSM 506]
          Length = 1013

 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/348 (11%), Positives = 90/348 (25%), Gaps = 47/348 (13%)

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +RI+    A+ +    + L       +         +   +    G+     +    
Sbjct: 599 GARLRILGPLEARLVSVDRMVLAGLVEGTWPSAVRTDPWLSRPMRAALGLEAPERRIGLS 658

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            +                            + +LI+              R    +   S
Sbjct: 659 AHDF---------------------AQGCGAPELILSHPRKLGGAPTVPSRFLQRLEAVS 697

Query: 689 FHNDERVKKIKLT-NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                ++ K++                ++      P    E   + +   +I   L  P 
Sbjct: 698 GEARWKMAKLRGDRFRRLAALIEEAPAASRIARPEPAPPVELRPKRLSVTEIETWLRDPY 757

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHKRKN 803
                    L P          L+ L        RG  IH  L    Q        + + 
Sbjct: 758 TIYARHVLRLRP----------LDMLDEAPGAAERGSAIHDALGAFAQAFPEALPAEPEA 807

Query: 804 FITSYCTKNAKLWPAKEYKNLL------LSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
            + ++  +  +   A   +  L        + R +       A +   ++E+   G++  
Sbjct: 808 GLLAFGREAFRELEAFPAEYALWWARFERLVPRYIGWERARRADTRRVFAELG--GRMAL 865

Query: 858 PKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
                 ++GR D+I    +  + I ++KT        +     +  QL
Sbjct: 866 AGGRFALTGRADRIEQLREGGLAIIDFKTGAVP--TAKQTAAHYSPQL 911


>gi|228906784|ref|ZP_04070653.1| UvrD/REP helicase [Bacillus thuringiensis IBL 200]
 gi|228852788|gb|EEM97573.1| UvrD/REP helicase [Bacillus thuringiensis IBL 200]
          Length = 778

 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 93/267 (34%), Gaps = 46/267 (17%)

Query: 48  KKAQTLQQASQTQCI-EERFSLLSSF-------FLTQKFTPQKNIITQEINKKSPDLKEK 99
           K+   L++A   +   EE   LLS         +L +K     N    +  K++  L   
Sbjct: 398 KQIDALEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFN-DFEKETKVLGRM 456

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL 159
           +   + +   +R    T +    T     L     A +   KK       +D+   T ++
Sbjct: 457 I--VRKKLKPLRKGVQTLRFINFTGIYKQLFTD--ASWVTGKKPKEW---DDICSLTVNM 509

Query: 160 LKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++ L        
Sbjct: 510 LDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKRLF------- 562

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   +  +GD  Q+I++ H +E         +     TN       I L  S+RST
Sbjct: 563 ----PAARMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------INLTRSYRST 611

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTT 294
             I+     +            D    
Sbjct: 612 KPIIEFTRALVPEGNKIHAFERDGEKP 638


>gi|65318432|ref|ZP_00391391.1| COG3973: Superfamily I DNA and RNA helicases [Bacillus anthracis
           str. A2012]
          Length = 776

 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFXQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|294084829|ref|YP_003551589.1| inactivated superfamily I helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664404|gb|ADE39505.1| Inactivated superfamily I helicase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 1002

 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 72/684 (10%), Positives = 167/684 (24%), Gaps = 67/684 (9%)

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
           L    I      N            + R       ++ +VF          + S      
Sbjct: 269 LHFMDITPLDVQNWVSNPESQPATSARR------DLMREVFRPAPTTATWRQLSEDRPDL 322

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ-ESSASILARRIAYTISNM 356
              R    G   +                 +   + D      +    LA  +   ++  
Sbjct: 323 G--RDALQGLQVIETHDRRAEAGLIAADLRATLEHEDQTAALITPDRHLAEAVIAELARW 380

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
               TI  +    ++  +    L    +           L    K               
Sbjct: 381 --KITIDDSAGTTLLTHRAGAFLQLLVEAMQENFAPL-ALLGVLKHPCAAGGMAQADFRA 437

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
            ++ +  L          L  + +      +  +     I          ++        
Sbjct: 438 KVRHIEKLVLRGQRPAPGLEGLAIAIGDDKDLRDFIAIHIAVPFTPLVDAWQAPAPTMAS 497

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
                    + +           P D  T +     G        G +        L   
Sbjct: 498 LARGLGQTAEMMAAQTMCIPSDGP-DTETRVADKNDGALHLWDNQGGKAAAD---LLKNL 553

Query: 537 LRNEQNSYSSLQELISELEQYPPTIK-RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
           + +  +   +  +    L Q    I   A   +H  + I+    ++   +  + +     
Sbjct: 554 VEHGHDQAVNATDFAQTLVQIMQDITVHAVQQSHPRLAILGAVESRMQTADHLIIAGFNE 613

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
             +  +      +   +    G+P    ++    + V   I + K            V +
Sbjct: 614 GNWPPQPQTDPWMNSDMRKAVGLPPHNWRTSLSAHDVYMAICNPK------------VTI 661

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA            ++                   D  +  + +  ++++ +      +
Sbjct: 662 TRAQR---------QNDAATIPS-------RWLQRMDVVLSALGIAKALDRGDEKFEWLA 705

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
             +P+  P   +    +     +  K   + I   IN+PY L    I       L+ +  
Sbjct: 706 ILNPKTIPNRIKRPAPKPPLSARPRKFSATEIDMWINDPYALYAKKI--LKLRQLDDIDR 763

Query: 776 DNQTFNRGLIIHKLLQ---------VIFTLPEHKRKNF-----ITSYCTKNAKLWPAKEY 821
                 RG + H +L           +                   + T + + +    +
Sbjct: 764 PPDAALRGTLFHNVLADFTRTFPSGSLPDTAYQDLLAIGKTHFADQWATPDIRYFWWPRF 823

Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFI 880
           + +   I   +E            ++E   S  +  P   + +S R D++  +      I
Sbjct: 824 EMVAGWI---IETEKQRRDDLAFIHAEKKGSTILTGPAGPVELSARADRLEKTKDGTWHI 880

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQL 904
            +YKT     +    +      QL
Sbjct: 881 IDYKTGIVPSKS--KVASGRATQL 902


>gi|227504336|ref|ZP_03934385.1| RecB family exonuclease [Corynebacterium striatum ATCC 6940]
 gi|227198984|gb|EEI79032.1| RecB family exonuclease [Corynebacterium striatum ATCC 6940]
          Length = 251

 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 21/170 (12%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKR--KNFITSYCTKNAKLWPAK-EYKNLL--LS 827
                    +G ++H +L+    LP  +R     +     +  K+  A  E K L+   +
Sbjct: 12  PEPKTLAQVKGTLVHAVLENTHKLPREQRDYPTAVKMIKPEWEKMVAADSELKELVPDDA 71

Query: 828 ITRLLENPM--MTTAMS-------CDSYSEVSVSGKINCPKKDIIISGRIDQISISQ-QN 877
                 +    +                 E+ V   +      + + G ID++ ++    
Sbjct: 72  TLDFFVSARDLVKGYFQMENPQGFDAQECEMYVDTVLP---NGVPVRGFIDRVDVAPTGE 128

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           + + +YKT         H       Q+  Y  +             L+Y+
Sbjct: 129 VRVVDYKTGKKPLPRYSHDA---QFQMRFYALVYWRILGTIPAQLRLMYL 175


>gi|99082685|ref|YP_614839.1| hypothetical protein TM1040_2845 [Ruegeria sp. TM1040]
 gi|99038965|gb|ABF65577.1| hypothetical protein TM1040_2845 [Ruegeria sp. TM1040]
          Length = 977

 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 71/592 (11%), Positives = 167/592 (28%), Gaps = 66/592 (11%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL- 445
            ++T       + + I    +    L      + L  +             + +LK PL 
Sbjct: 357 RMLTRQVSAALDRWDILPDDSAGLPLQLSPPGRFLRHVADLFCRPLQADMLLTLLKHPLT 416

Query: 446 -----FNFSEDDIFKICTQRHETETVYEYIQKFANCGISK-----FQHVIKYIHELIHIA 495
                          +          +   +  +  G ++     +   +          
Sbjct: 417 HSGAERGLHLLHTRDLELHMRRNGPPFPDCESLSAFGSTRDLQPGWSDWLAQSFAGRDRT 476

Query: 496 QFCSPHDFFTLILGAKKGRQQ----------FISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
              +  D+ + +    +G             +  + GN   DVL+E    +      +  
Sbjct: 477 GTRALSDWVSDLRETAEGIAAGSQVGGTGELWDKKAGNAARDVLEELQAQSPHGGDMTAR 536

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
              +L+           R   A +  + I     A+   + +V L       +       
Sbjct: 537 DFADLLG--ALLSQGEVRDRDAPYGSIMIWGTLEARVQGADLVILGGLNEGSWPEAARPD 594

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             +   L  + G+ +   +     +     +   +            V +TRA       
Sbjct: 595 PWLNRKLRHEAGLLLPERRIGLSAHDFQQAVAAPE------------VWLTRAVR----- 637

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                S E  +    W + + +              +++     +  +W++      P  
Sbjct: 638 -----SEEADTVPSRWLNRMTNLLGGLPDQGGQAALSAMRMRGQVWLDWASVLDAPVPTP 692

Query: 726 REETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
                         P++L  + I   I +PY +    +       ++ LL +     RG 
Sbjct: 693 LSPRPSPRPPVAARPRRLTVTEIPKLIRDPYAIYAKHV--LRLKPVDPLLQEPDALLRGT 750

Query: 785 IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
           IIHK+L+      + + +N    +   +A+     E    +     L     +       
Sbjct: 751 IIHKVLEDFIKSAQEQPENLSARHFIDHARRVLETEVPWPVARTLWLTRLKKVAEDFVTG 810

Query: 845 SYSEVSVSGKINCPKKDII--------ISGRIDQISISQQNIF-IFEYKTHHHVPQEIEH 895
                S +      K   +        I+ + D+I + ++ +  +++YKT     ++ + 
Sbjct: 811 ERQRQSRARPSGFEKSGQVRLDPLDFEIAAKADRIDVDERGLLHLYDYKTGDPPSEKQQK 870

Query: 896 IPYTHIAQLSIYEKILKDS-----YPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
                  QL I E  + +      Y    +   L    +P V  +    L++
Sbjct: 871 SFEK---QLLI-ETAMAEQGAFSDYGAARVERALYIGLKPPVKEVAAPILDE 918


>gi|226324829|ref|ZP_03800347.1| hypothetical protein COPCOM_02616 [Coprococcus comes ATCC 27758]
 gi|225207277|gb|EEG89631.1| hypothetical protein COPCOM_02616 [Coprococcus comes ATCC 27758]
          Length = 203

 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 72/223 (32%), Gaps = 45/223 (20%)

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE 531
           +   C       +I      + + +  +P+     I         F+  +  +      +
Sbjct: 12  RKFYCDKDWMLDIIDQFDVDVRMMKNMAPYAAIQYIRKKIGY-DDFLKEYAEKHQISWKQ 70

Query: 532 FLNFTLRNEQNS---------YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
            ++     E+ S            + +   ELE+     ++      N+V++MT+H+AKG
Sbjct: 71  LMDVMAELEERSKNFKSYDEWEIHIAKYTQELEEQQAKARKIKGERENKVQLMTIHSAKG 130

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   VF++        H+                                   K  KK 
Sbjct: 131 LEFEDVFVIHANEGEIPHQ-----------------------------------KAEKKD 155

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             EE  RL YV +TRA + L I   +  +       R   +++
Sbjct: 156 EIEEERRLFYVALTRAKNNLCISYITQKNGNSIKPSRFVEELL 198


>gi|225174552|ref|ZP_03728551.1| ATP-dependent DNA helicase, RecQ family [Dethiobacter alkaliphilus
            AHT 1]
 gi|225170337|gb|EEG79132.1| ATP-dependent DNA helicase, RecQ family [Dethiobacter alkaliphilus
            AHT 1]
          Length = 1609

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 22/141 (15%)

Query: 149  FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
            F+D++  T + ++  +V      K       +++DE QD     + ++++L         
Sbjct: 1145 FDDVVKATIEKIRNGEVEPGRITK-----TVLVLDEAQDMDQDVFNLVQTLM-------- 1191

Query: 209  THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
              +    + AVGD+ Q+IY F G+  K +                + +  EL  ++RS  
Sbjct: 1192 AQNEDMRVIAVGDDDQNIYEFRGSSSKYLREFM---------VENQAAHYELLENYRSKR 1242

Query: 269  DILTVVDKVFSIPENAQGLSE 289
            +++   ++   +       +E
Sbjct: 1243 NLVHFTNQFAPLIRGRLKKNE 1263


>gi|306835989|ref|ZP_07468981.1| DNA or RNA helicase [Corynebacterium accolens ATCC 49726]
 gi|304568155|gb|EFM43728.1| DNA or RNA helicase [Corynebacterium accolens ATCC 49726]
          Length = 752

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 98/338 (28%), Gaps = 57/338 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            L+++ES      D W  P    S++   +  S E          +  Q A         
Sbjct: 417 DLAIDESVVGCIDDFW--PELDPSEVLAALLSSRERIASAARGYDEETQAALYRPDGYTW 474

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               S   L  +      +   E  K + D      K +++     D  +     +ST  
Sbjct: 475 TD--SDAALLDELAVLIGLPNPEEKKAAKDA-----KWREQIADAEDALDILSSSESTDN 527

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE------INH 179
              + +       E    + V+D          L ++++V                   H
Sbjct: 528 DDDMFEA------EILSAHDVID-------AETLAQRQEVRDTRTTAQRAREDHTWAFGH 574

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           I++DE Q+ + ++W ++                 R +  VGD  Q+        P  V  
Sbjct: 575 IIVDEAQELTPMEWRMLFR-----------RCPSRWMTLVGDTSQT------GSPAGVDD 617

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                +       Q+F    L +++R+   I  + + +         L+          +
Sbjct: 618 WGEALE---PFIAQRFRHHLLTVNYRTPEPITELANGL---------LASIDPEATPAIA 665

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
            R G+               ++ + +  +     ++  
Sbjct: 666 IRDGEPVRRLADADFTPGVTTEDDGRLTAVIDATNAEA 703


>gi|291439331|ref|ZP_06578721.1| helicase protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342226|gb|EFE69182.1| helicase protein [Streptomyces ghanaensis ATCC 14672]
          Length = 774

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 89/295 (30%), Gaps = 47/295 (15%)

Query: 3   NRFGLSLNESYELIYKDLWPL--------PYFQVSDINKYVSLSMETGNPTILKKAQTLQ 54
            R  L   E    + +             P  +   ++     S   G  T  + A  L+
Sbjct: 372 RRLELEAGE-LADVRRAALGGTAPVNLLRPRARKLLLDALWERSGAAGRHTDPELAAELR 430

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            +       E        F+         +    +     D K   + ++        R 
Sbjct: 431 SSFDEDVTSE------DDFIAFLDAWWPELTPAAVLDAMADEKRLGRWARRVLNPGEVRR 484

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAK------KKNCVLDFEDLIINTNDLL----KKRD 164
               + ++  +   +A  L    +         ++   +D  D +    +L+    + + 
Sbjct: 485 VARSLQRAGYSVHDIA--LLDELQAVLGAPARPRRKREIDPLDQLTGLEELMPVREESQR 542

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             A    +   E  H+++DE QD + +QW ++                  T   VGD  Q
Sbjct: 543 ERAERLAQERVEYAHVIVDEAQDLTPMQWRMV-----------GRRGRHATWTVVGDPAQ 591

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           S      ++P    R +           +      L +++R+ A+I  +  KV +
Sbjct: 592 S----SWSDPDEAARARDE-----ALGTRPRRRFRLTVNYRNPAEIADLASKVLA 637


>gi|145512671|ref|XP_001442252.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409524|emb|CAK74855.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2643

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 24/185 (12%)

Query: 118 KMFKSTLASLTLAKYLNAHY---EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
           +++     +  L + +   Y   E  K +    DF D++           +   +  + +
Sbjct: 728 RVYLRLNKNDELFEDIFECYILYERWKIQQGYYDFMDVV--------NHILVQLVYGRCN 779

Query: 175 Q-EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
              I++++IDE QD       ++  +TE            + LF  GD  Q+I    G  
Sbjct: 780 LIPIHYLMIDECQDLPHAVLLLLCKITE------------QGLFFSGDTAQNIAKGVGFR 827

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            + +    +  +          +I +L ++FRS  +IL + + + S+ E     + D   
Sbjct: 828 FQDLKSLFKKPEISYNAKQNDLTIHQLTINFRSHNNILQLANCLVSLLEIFFPNTIDKLK 887

Query: 294 TIRHR 298
             R  
Sbjct: 888 KERSN 892


>gi|302858581|gb|ADL71327.1| gp67 [Mycobacterium phage Eagle]
          Length = 263

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/213 (8%), Positives = 56/213 (26%), Gaps = 49/213 (23%)

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
           ++   +  S +K     PY    S +D   +               G  +H+ ++     
Sbjct: 3   EERKHRSVSQLKQYEKCPYSYKLSRLDKAWQRPAAWTAQ-------GSAVHEAIEAWERS 55

Query: 797 PEHKRKNFITSYCT------------------------KNAKLWPAKEYKNL-LLSITRL 831
                     +                           +           ++ L  + + 
Sbjct: 56  GRTMSLEAAQAVFRESYQKYINAACAITPNFEYWFASGRYGGRLDIARRYDIGLEQVGKY 115

Query: 832 LE-----NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
           ++        +       +     +    +     +++ G ID +  + + + + ++KT 
Sbjct: 116 IDWATSHTEEVIWIAPDGTP---GIELGFDIDLDGVLVRGFIDAVIETDEGLIVRDHKTG 172

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKS 919
                +          QL++Y   L + Y  + 
Sbjct: 173 KQPGDD---------FQLAVYAVALAEEYGIEP 196


>gi|218902236|ref|YP_002450070.1| helicase, UvrD/Rep family [Bacillus cereus AH820]
 gi|218534800|gb|ACK87198.1| helicase, UvrD/Rep family [Bacillus cereus AH820]
          Length = 776

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +     N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGNNIHAFERDGEKP 638


>gi|320325383|gb|EFW81449.1| hypothetical protein PsgB076_07197 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 558

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 71/584 (12%), Positives = 155/584 (26%), Gaps = 94/584 (16%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK------YLNAHYEEAK 141
           +I ++  +L E+ K       +     N     +   +  T+A        + + Y    
Sbjct: 29  DIRRRITELDEEFKNYSSRVRQTTRDRNKADQERYARSLETIAGVKTFNCGVGSDY---- 84

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
               VL  ED++   + LL+ R +   +   +      + IDE QDT          + +
Sbjct: 85  -ARGVLGHEDILQLADFLLQNRPLFRRV---VALNFPFVFIDESQDTFPS-------VVK 133

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            F   +        L   GD  Q+I+     +       +                I  P
Sbjct: 134 SFKEVEAQMRRKFCLGFFGDPMQAIFMRGSGDIPLEDHWRA---------------ITKP 178

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            +FR    IL V + V +  +   G+ +      R         G+ +++    + +  +
Sbjct: 179 ENFRCAKQILDVANAVRAQGD---GMEQVRGLHERVDGELKPVEGSARMFVLPNTLNRIE 235

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              +  +W++  ++  +  +   +A +I   +  M   + +   G    +  K       
Sbjct: 236 ALARIRAWSAATNN-DEGWTTPDIALKILVIVHRM-AANRLGFGGIYSALNDK------- 286

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                     + + +++     V     F L                +   ++ + + +L
Sbjct: 287 ------TSEGMKQGMQDGTGWPVRPFLSFALP-----------IVAAVKAGNEFAAMNLL 329

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           +      +   +          E      +  A             I ++          
Sbjct: 330 RKFSPRLAPGALTGRRAAAVLRELHAAMSRLVAM-----LDEAGTTIGDIALHLCDTGLF 384

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
           +F    +      +                             SS   +    +     +
Sbjct: 385 EFDDRYVRVLGFVRDVADAAQEP---------EAADAVPAEGLSSDAAMAKFFKCSAQEL 435

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                         T H  KG +   V +V                     +        
Sbjct: 436 GPYERYVSEGSPYATQHGVKGAQFERVMVV---------------MDEEESDYRTYNYEH 480

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           +  S               ++T     RLLYV  TRA   L++ 
Sbjct: 481 VFASAEARAADRARALGGDENTWSRTLRLLYVCCTRAQRGLVLT 524


>gi|257066034|ref|YP_003152290.1| ATP-dependent nuclease subunit B-like protein [Anaerococcus
           prevotii DSM 20548]
 gi|256797914|gb|ACV28569.1| ATP-dependent nuclease subunit B-like protein [Anaerococcus
           prevotii DSM 20548]
          Length = 1121

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 80/671 (11%), Positives = 190/671 (28%), Gaps = 118/671 (17%)

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
            + NP +   +       +  S        A  I+ ++           +  + KD+ + 
Sbjct: 281 ERFNPLKFGGSPNNIRFLENPSTKTEVENTARIINYLVKE---------KGYRYKDLAIY 331

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           +    +          + N Y + +  +    L D+  +K  +A+ R ++   +      
Sbjct: 332 ISSEDE---YKNEIIKVFNRYDLPIFMDSDRKLIDNHIVKTFLAILRLVIYNFNSQDLSY 388

Query: 440 MLKSPLFNFSEDD------IFKICTQRHETETVY----------EYIQKFANCGISKFQH 483
            L+S LF+FS +       +      R     ++          ++ +        + + 
Sbjct: 389 FLRSGLFSFSVNFEEKTIILENYIKNRKIKGKMFLEDKYFVYDEDFYKNLCENDPKREEK 448

Query: 484 V------IKYIHELIHIAQFCSPHDF-----------------------------FTLIL 508
           +       + I+EL                                         F  IL
Sbjct: 449 LGAKTYEYQVINELRDRILDLLNPLLELKEEKTRDLCIGIFNIIDDKDIRRGIASFQKIL 508

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR-AHSA 567
                  ++     ++V D   E L   +       SSL+++ S +E     I       
Sbjct: 509 KESGRLDEYKEN--DQVWDKFVEILEEIVDLMGERSSSLRKVYSLIEATCKDINVGIIPP 566

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           + + + I +   A+  +  V F++      F   + + + +     D         +   
Sbjct: 567 SKDHIEITSFARARIADRGVNFILGLNDVFFPSTNREDLIVGKGEKDKLRALDLDLKVFD 626

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL--------IICKHSNTSNEKKSNQR 679
            +    + +   K  T  +   L Y    R S+ +        I+   S+   +      
Sbjct: 627 EDFEEREKLVFYKLITISDKLFLSYSLANRKSEAINKSIILNSIMNIFSDREGKTYGMVY 686

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT------PLEREETIKQL 733
                +     + + ++   L +          + +               +  E I++ 
Sbjct: 687 GNDLGLSIEKFSYKTMEVRALRSIRQMMRNENVDENDREIARAFIKYLKENDSYELIEKG 746

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------LESLLSDN---QTFNR 782
           ++     K L   +   + +    N S I++  +          L   + ++        
Sbjct: 747 LNFTNDKKNLREDLAGSLYKKNHFNVSEIESYSRCPYKYFVNYGLRPNIDESYEVDHMEV 806

Query: 783 GLIIHKLLQVIFT----------LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT--R 830
           G I+HKL + I                     I ++     +       +N         
Sbjct: 807 GNIVHKLFEDISRNLSEKNIEELKASDLEDILIENFKEATLRNLDKTRRENPRNKFILNN 866

Query: 831 LLEN-----PMMTTAMSCDSYSEVSVSGKINCPKKDII----------ISGRIDQISISQ 875
           +L +       +   +    +   +V        +D +          + GRID+I  + 
Sbjct: 867 VLNSAKRNSEKLIDQVKSGDFKIYAVEKDFGYENEDNLPKVYVDDKNYLRGRIDRIDKAG 926

Query: 876 QNIFIFEYKTH 886
             + I +YKT 
Sbjct: 927 NFVRIIDYKTG 937


>gi|150400667|ref|YP_001324433.1| hypothetical protein Maeo_0229 [Methanococcus aeolicus Nankai-3]
 gi|150013370|gb|ABR55821.1| hypothetical protein Maeo_0229 [Methanococcus aeolicus Nankai-3]
          Length = 306

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 25/171 (14%)

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN----- 834
              G +IH++L ++     H  K  I    T+   L    + + LL      L++     
Sbjct: 57  AWHGDLIHQVLSMLHRRYLHNIK-LIKGGLTEKDPLPTEADVEELLNKANETLKSRGIIP 115

Query: 835 ---------PMMTTAMSCDSYSE--------VSVSGKINCPKKDIIISGRIDQISI-SQQ 876
                      +   +   +  E        +    ++     D ++ G +D I+     
Sbjct: 116 ISKENNKLISQVKELLKKFNKIEGKHLYPKIIDTEVRLQADMGDYLLYGVMDVIAKNEDG 175

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
              I++YK     P + E     +  Q+ IY ++LK         C+L +V
Sbjct: 176 EFEIWDYK-GMLFPSKDEDKLKKYEYQMLIYGELLKQQTGRYPSKCILYFV 225


>gi|311067548|ref|YP_003972471.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
           atrophaeus 1942]
 gi|310868065|gb|ADP31540.1| ATP-dependent helicase/deoxyribonuclease subunit B [Bacillus
           atrophaeus 1942]
          Length = 1166

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 81/700 (11%), Positives = 204/700 (29%), Gaps = 160/700 (22%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           Q ++       IA  I  ++           + ++ KD+ +L R          + + + 
Sbjct: 316 QAANRRTELEGIAREIHALVRD---------KGLRYKDMAILAR---QPEDYKDMVKEIF 363

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS-------------- 443
            DY+I    + +  + +H  ++ + +    I       +    +K+              
Sbjct: 364 ADYEIPYFIDGKASMLNHPLVEFIRSSLDVIKGNWRYEAVFRCVKTELLFPLDRPKNIIR 423

Query: 444 ---------------------------PLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
                                           S DD F    Q  E E +    + +   
Sbjct: 424 EQVDQLENYCIAYGIKGDRWTRGDRFVYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVP 483

Query: 477 GISKFQHVIKYIHELIHIAQFCSPH-DFFTLILGAKKGRQQ-------FISRFGNEVIDV 528
            + + Q  +K    +  +A+    + +   + L   + RQ+         ++  N+  D 
Sbjct: 484 PLFRLQKRMKQAKTVQDMAEALYLYLEETDIPLKLDQERQRAEEDGRIIEAQQHNQAWDA 543

Query: 529 LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPV 587
           + + L   +        SL      +E    ++K A      ++V +  +  ++   +  
Sbjct: 544 VIQLLEEFVEMMGEDEISLSLFQQMMETGAESLKFALIPPALDQVFVGNMDLSRMYGTRC 603

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
            F++     V   +            +D G+     +   +   V   +    +    + 
Sbjct: 604 TFVIGANDGVLPARP-----------EDDGVLSDDDREWLKTIGVE--LSSGGRERLLDE 650

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
           + L+Y+ ++  SD+L +      +  K     T    + + F   +          ++  
Sbjct: 651 HFLIYMALSSPSDRLYVSYPIADAEGKTLLPSTVVKRLTELFPEHQERLLTNEPEQVSDC 710

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL---------- 757
           E + Y  +    ++         +  + E  I    +S     +NEP  L          
Sbjct: 711 EQLLYLVNKSVAQSYT---ASQFRLWLKEYDISDVWWSAYNVLMNEPDRLNSKKLFSSLF 767

Query: 758 -----------------------NPSTIDTKGKTNL-----------ESLLSDNQTFNRG 783
                                  + S ++T                 E      +  + G
Sbjct: 768 FRNEVKPLERAVSRQLYGEHIHGSVSRMETFNACPFSHFASHGLHLKERQFFKLEAPDIG 827

Query: 784 LIIHKLLQVIFTLPEHKRKNFITS------------------------YCTKNAKLWPAK 819
            + H  L++I      ++ ++                             + N   +  +
Sbjct: 828 QLFHSSLKLISDRLREQKLDWRDLTKDQCNKFSYEAVERLAPKLQKEILLSSNRHYYVKE 887

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIIS--------GRIDQI 871
           + + ++  ++ +L      +  +     E+   GK   P     +         GRID++
Sbjct: 888 KLQKIVARVSGILSEHAKASGFAPVGL-ELGFGGKGPLPPLTFTLKNGCTMELVGRIDRV 946

Query: 872 SISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
             ++ +    + I +YK+      ++  + Y    Q+  Y
Sbjct: 947 DKAESSKGLLLRIVDYKSS-DKGLDLSEVYYGLALQMLTY 985


>gi|254514375|ref|ZP_05126436.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
 gi|219676618|gb|EED32983.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
          Length = 885

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/488 (9%), Positives = 112/488 (22%), Gaps = 78/488 (15%)

Query: 450 EDDIFKICTQRHETETVYEYIQKFAN--CGISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
             D+      +      ++ + +         + +   +++     I             
Sbjct: 355 MRDVLDDLIDKGMGAAPWDAVLQLDTNGRWQRRARPPSQWLEPFRAILAAWGWSQGAA-- 412

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
           L + + +Q    +   +    LD F             +  E +  L +     +     
Sbjct: 413 LDSLEYQQALQWQEALDAFATLDLF---------TGALTFAEAVQSLRELLSEQQFQPRT 463

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
               V+++      GL    +++    +  +        ++  SL  + G+P        
Sbjct: 464 EDQAVQVLGPLETTGLRFDAIWITGMSADRWPAAAQPNPYLPHSLQREQGMPHADAGW-- 521

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
                                R       +A     +                 Y    D
Sbjct: 522 -------------------ERR-----WAKARWDQWVAGAGEIQTS--------YLSQRD 549

Query: 688 SFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                       +   +  ++W               +  +     + E +   +     
Sbjct: 550 GAEALPSPLIAVVPGCVESEDWAMDRRWLAQASTAAFDAVDLKPVPLTEDERAYQGVGAS 609

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----------QVIFTLP 797
             +                     +L +      RG ++H+ L            +  + 
Sbjct: 610 VLEQQSACPFQAFAATRLQAMQTPTLAAGLLPSERGTLLHRALYDLWGSLGDSAGLALIA 669

Query: 798 EHKRKNFITSYCTKNAKLWPAKEYK----NLLLSITRLLENPMMTTAMSCDSY------- 846
           +   +  I             +       +LL    + L+  +                 
Sbjct: 670 DEALRAAIERAVDYAQGGLLKERLDVVGGDLLSLERQRLDVVLRRWLALERERSDDFAVT 729

Query: 847 -SEVSVSGKINCPKKDIIISGRIDQISISQQNI-FIFEYKTHHHVPQEI--EHIPYTHIA 902
             E     ++     ++ +  RID+I         I +YK+          E  P     
Sbjct: 730 GREEPREHQL----GELRLRLRIDRIDQLHDGAKLIIDYKSGAIGSVNKWFEERPSR--P 783

Query: 903 QLSIYEKI 910
           QL +Y  +
Sbjct: 784 QLPLYALL 791


>gi|330721703|gb|EGG99704.1| RecB family exonuclease [gamma proteobacterium IMCC2047]
          Length = 464

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/383 (11%), Positives = 102/383 (26%), Gaps = 53/383 (13%)

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           L +   +           ++++ +    GL    V+LV     ++         I     
Sbjct: 4   LTRVLGSTDFQAQTPQTPIQVLGMLEGSGLNFDAVWLVGLNDHLWPAAANPNPFI----- 58

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                PI + Q  +  +   +      +    +Y          +S Q+I     N  +E
Sbjct: 59  -----PIPMQQQFAMPHASPERELQFSRELLRDYLH--------SSAQVIASYSLNNGDE 105

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH--PENTPLEREETIK 731
                    D V  +      V                   +      +  P    +T +
Sbjct: 106 PLRASSLIDDFVATTKDQLNLVTDTSHPFYRELANSSESFRALEPYNDDTGPTLNIDTER 165

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
            +     +  +   P +   N                +L           RG ++H  L+
Sbjct: 166 VVGGSALLKDQAACPFRAFANHR----------LSARDLPEPSYHLDAAQRGTVLHAALE 215

Query: 792 VI-----FTLPEHKRKNFITSY----CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
            +      +     R   +         + A      +  +L  ++    E   +   ++
Sbjct: 216 QLWLTLKDSSTLIARDATVLQQDMSDAVRKALKPLIAQRDDLFGAVYTDNEAQRLQRLLA 275

Query: 843 CDSYSE--------VSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHH--HVPQ 891
                E        V+    +     D+ +  R+D+I      ++ + +YKT        
Sbjct: 276 RWLQIEKSRSAFDVVATEKALVINIADMPLRVRVDRIDRLDDGSLMLIDYKTGFCSTSKW 335

Query: 892 EIEHIPYTHIAQLSIYEKILKDS 914
           + E +      QL +Y   +   
Sbjct: 336 QGERLEE---PQLPLYMVTMAGI 355


>gi|313816679|gb|EFS54393.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1]
          Length = 751

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 54/401 (13%), Positives = 111/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQSLPRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 663

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +V+   R      + +  F  +   I +   D     D 
Sbjct: 664 APVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|319934766|ref|ZP_08009211.1| hypothetical protein HMPREF9488_00042 [Coprobacillus sp. 29_1]
 gi|319810143|gb|EFW06505.1| hypothetical protein HMPREF9488_00042 [Coprobacillus sp. 29_1]
          Length = 895

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 71/672 (10%), Positives = 172/672 (25%), Gaps = 99/672 (14%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           + L++ +    D   +   E + +  D         I A      +   +          
Sbjct: 141 IHLYKALKEHCDEFTHITAEGFLNQQDLYSSYQHIYIEADHHIEAVKQTL---------I 191

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY---KISVVGNDRFILTDHLAIKDLMAL 424
            ++    DI +L   + D  L+      L  +          ++      +         
Sbjct: 192 HQLAIQNDITLLYTHQPDQRLMNLPFHELCKEALTLNEPTHISEYLFTQKNTVSSTNEHY 251

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDI----FKICTQRHETETV-----------YEY 469
             FI           ++ S      ++ +    F I         +           +  
Sbjct: 252 FTFIA-PTPHQEVKRVIYSIQQKIVDEGLHYQDFMIVYPNSSYIHLLVDTLTVLNIPHSL 310

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
               +      +Q +I  +  +   +     H      L                  + L
Sbjct: 311 SMTSSCVYDKSYQKIISALDCIPDSSISDIAHQLHQEELEKDYY-------------EYL 357

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           +         +     + QE             +  S   ++++I T+   K  +   +F
Sbjct: 358 ESL------FDYFDIITAQEFKEFFTATYIHNHQEKSNTLDQIKICTIDKVKTAQPKHIF 411

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
            +     +F         ++                 +   + +     LK         
Sbjct: 412 FLGLNETIFPALIKDTGLLLDEDIQLLRKFQITTPLNTTEQLGAHHNDILKA------LL 465

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
              + MT +  +  +                  + +  S    E    + L  +   +  
Sbjct: 466 QPAISMTFSYCKQTLSG----------------ETLLQSSLYKELENLLTLHPAFELNYL 509

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
              ++       T  E      Q            S    +      L+ S I+T  K  
Sbjct: 510 PLDDYYLSGGLITEKELLNKNIQDYIHSHNQPVQLSRETVEKLYSPTLSVSQIETYNKCP 569

Query: 770 LESLLSDNQTF-----------NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
            +  +                   G ++H +L  I    +      + +Y  ++  L   
Sbjct: 570 FQYFVQYGLGIYPTKESQLLPNELGSLVHYVLS-INIDQQVDIGTIVDNYILQDENLQTK 628

Query: 819 -----------KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGR 867
                      ++ K  L     +L+  +  +              K+    + +   G 
Sbjct: 629 ISNSHINQYFIEQLKKDLEMTLTVLKRQLKISQFQLHDK-----EKKVQHDIQGMHFKGF 683

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           +D+I   Q  + I +YK+      +I         Q+ +Y K++ + Y       +L + 
Sbjct: 684 VDRIDQYQNYVSIIDYKSSA-KDIDINLAIQGFHIQMLLYLKMVTELYQKDP-GAVLYFN 741

Query: 928 SEPKVFIIPQNK 939
           ++ ++  + QN 
Sbjct: 742 TKKRILSVNQNM 753


>gi|301052686|ref|YP_003790897.1| ATP-dependent DNA helicase replicase [Bacillus anthracis CI]
 gi|300374855|gb|ADK03759.1| ATP-dependent DNA helicase replicase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 776

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 89/263 (33%), Gaps = 42/263 (15%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLGEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  S+RST  I+     +    +N      D       + S        +L E++ ++
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKPTVTKVSNDS-----ELHERITAK 656

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS------NMIGTDTIFSNGKKRVI 371
             ++   Q  +  +       ES+ +  A      I              +         
Sbjct: 657 V-AELQKQNHNTIAIICKSAAESATAYEALSPIENIKLVKSNSAEYEQGIVVIPAYLAKG 715

Query: 372 QAKDILVLVRKRKDTPLITFLTR 394
              D +++    KD      + R
Sbjct: 716 IEFDAVIIYNASKDVYNDESVRR 738


>gi|291333832|gb|ADD93515.1| hypothetical protein GB2207_01992 [uncultured marine bacterium
           MedDCM-OCT-S04-C13]
          Length = 890

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 55/416 (13%), Positives = 123/416 (29%), Gaps = 63/416 (15%)

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMT 576
           ++ F  +  +     L    R +       L      L Q               ++I+ 
Sbjct: 416 LNTFEYQQREHWQRLLEQFCRLDNLGIEVGLTTARKHLVQMAQDAVFHPQTGDAPLQILG 475

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +    GL+   ++++   SQ F            ++N +P +P    +  +  + + +  
Sbjct: 476 LLEGAGLKFDQLWILGMHSQNFP----------AAVNINPLLPADFQRCHAMPHSLPERE 525

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            ++ K+   +Y           + +LI         E+ +      D+            
Sbjct: 526 LNIAKALWRDYR--------SNARRLIASYPLLRGEEQLTASPLVLDV------------ 565

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             ++                  P+ T L  E TI    + +KI       +         
Sbjct: 566 -TRVALDQLVGNIRRQPHWLERPDETELVAEATIAYNPEREKIKGGS---MLLKNQSSMP 621

Query: 757 LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----------QVIFTLPEHKRKNFIT 806
            N   I       L+  ++     +RG+++H +L            + +L E +  + + 
Sbjct: 622 FNAFAIHRLWAEPLQQPIAGLTAKDRGILLHDILYRLWGEWRNAAHLHSLNEQQISDALE 681

Query: 807 SYCTKNAKLWPAK------------EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
               ++      +            E+  L   I   L +     A       +V+    
Sbjct: 682 QVIEQSLTALGTQHPVLLGSRFRQLEHSRLQKLIIAWLTHEKSRPAFDVIGREQVA---- 737

Query: 855 INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
            +    D+ I+ R+D+I        + +YK+    P   +        QL +Y   
Sbjct: 738 -SVDFGDLQITLRLDRIDQIDGQSLVIDYKSGEVTPSHWQGDRPK-DPQLPLYIMA 791


>gi|227539354|ref|ZP_03969403.1| hypothetical protein HMPREF0765_3598 [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240667|gb|EEI90682.1| hypothetical protein HMPREF0765_3598 [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 359

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 31/189 (16%)

Query: 752 NEPYILNPSTIDTKGKTNLESLLSD----------NQTFNRGLIIHKLLQVIFTL---PE 798
            E   ++PS   +      +SLL++          +     G ++HK+L++I       E
Sbjct: 11  KEIKRISPSQFYSMKNCAYKSLLAEAFDKKPLLPLSPNAYFGTVLHKILELITKGIVKNE 70

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA-MSCDSYSE--------- 848
                          +      +   +  + + L N  +    +     +E         
Sbjct: 71  DNFNTEFDKQLKTVEEDLQENGFGFFVP-LQKKLRNFGLKKIQLKKHLRNEPKQQTNLGV 129

Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE-------HIPYTHI 901
           V+   +     +D +I G++D +  +   I I ++KT       ++        +   + 
Sbjct: 130 VNFYSEKWFESQDKVIGGKVDLVIENGNEIEILDFKTGAITQDCLDDEGELYSDVKEEYK 189

Query: 902 AQLSIYEKI 910
            QL +Y  +
Sbjct: 190 EQLKLYAYL 198


>gi|212224531|ref|YP_002307767.1| UvrD/REP helicase [Thermococcus onnurineus NA1]
 gi|212009488|gb|ACJ16870.1| UvrD/REP helicase [Thermococcus onnurineus NA1]
          Length = 533

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/396 (12%), Positives = 119/396 (30%), Gaps = 56/396 (14%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y   K+K  ++D+ED+++   D           R  I  ++ +++IDE QD SL+ 
Sbjct: 172 LLLDYIREKEKLGIVDYEDILMRAYD----------YRNDIVVDLEYMIIDEAQDNSLLD 221

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           +  +  +           ++   L   GD+ Q IY F GA         ++  K    + 
Sbjct: 222 YATLLPIA---------KNNATELVLAGDDAQLIYDFRGAN-------YKLFHKLIERSE 265

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
               I+ L  + R  ++I  +   +         ++      +   ++   +V  + L++
Sbjct: 266 I---ILNLTETRRFGSEIANLATAIID------DMNYIQKREVLSAATHSTKVAHIDLFQ 316

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            +    +           +  ++             +   ++ ++    I     +R+  
Sbjct: 317 MMSILQNMATTDLTVYILARTNA-------------VLNYVAKVLDEYKIQYKKNERITD 363

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF--ILTDHLAIKDLMALGRFILS 430
               L+ + +             + N  +  V   +     L  H        +   +L 
Sbjct: 364 FDRFLLSLNRLMRNEYTNDDIYTIYNYLRNKVAREEELKERLFQHKLHWTEKDVLGILLL 423

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK---- 486
             +  +   +L +      +  +  I + +     V   I    +    K     +    
Sbjct: 424 AYEQTTAKRILTTAKNTNFKIKLSTIHSAKGSEADVVFLINSVPHKTKMKILENYEGEKR 483

Query: 487 --YIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
             Y+                          + + SR
Sbjct: 484 VLYVAVTRARKFLFIVDQPVARRYEQLYYIRSYESR 519


>gi|255945935|ref|XP_002563735.1| Pc20g12500 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588470|emb|CAP86579.1| Pc20g12500 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2150

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 18/167 (10%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   YE+ KK    +D    +   + LLK       +  +I +    I +DE+QD     
Sbjct: 767 VFERYEKQKKLRKEID---ELDRVSALLKSLRDKRALAEQIQRCFEEIYVDEIQD----- 818

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH-GAEPKRVLREKRINQKRATNA 251
              +R L  D  +     S  R +   GD  Q I        P+         +  A   
Sbjct: 819 ---LRCL--DIVLLLGCLSDARGIHLAGDTAQCISKDSVFRFPEIKALFYDHYEVIANEQ 873

Query: 252 GQK----FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
            +          L  ++RS   IL+    V  +  +    + D    
Sbjct: 874 NRPTFAKPVQFSLARNYRSHQGILSFASWVMQLLWHGFPETVDKLDP 920


>gi|239930955|ref|ZP_04687908.1| ATP-dependent helicase [Streptomyces ghanaensis ATCC 14672]
          Length = 733

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 89/295 (30%), Gaps = 47/295 (15%)

Query: 3   NRFGLSLNESYELIYKDLWPL--------PYFQVSDINKYVSLSMETGNPTILKKAQTLQ 54
            R  L   E    + +             P  +   ++     S   G  T  + A  L+
Sbjct: 331 RRLELEAGE-LADVRRAALGGTAPVNLLRPRARKLLLDALWERSGAAGRHTDPELAAELR 389

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            +       E        F+         +    +     D K   + ++        R 
Sbjct: 390 SSFDEDVTSE------DDFIAFLDAWWPELTPAAVLDAMADEKRLGRWARRVLNPGEVRR 443

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAK------KKNCVLDFEDLIINTNDLL----KKRD 164
               + ++  +   +A  L    +         ++   +D  D +    +L+    + + 
Sbjct: 444 VARSLQRAGYSVHDIA--LLDELQAVLGAPARPRRKREIDPLDQLTGLEELMPVREESQR 501

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             A    +   E  H+++DE QD + +QW ++                  T   VGD  Q
Sbjct: 502 ERAERLAQERVEYAHVIVDEAQDLTPMQWRMV-----------GRRGRHATWTVVGDPAQ 550

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           S      ++P    R +           +      L +++R+ A+I  +  KV +
Sbjct: 551 S----SWSDPDEAARARDE-----ALGTRPRRRFRLTVNYRNPAEIADLASKVLA 596


>gi|228913727|ref|ZP_04077353.1| UvrD/REP helicase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228845919|gb|EEM90944.1| UvrD/REP helicase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 776

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLGEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|116179364|ref|XP_001219531.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88184607|gb|EAQ92075.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 742

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            +L + ++  W         + I++DE QD + + + +I              S+   L 
Sbjct: 148 RVLDRNELPRWD----SAPFDIIVLDEFQDCTKLLFWLINCFILANDQKAGGQSAR--LV 201

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            +GDE+Q+IY F GA+ + +     +    +      F+ I+L  SFR +   +  ++  
Sbjct: 202 VLGDERQAIYGFRGADDRYLTLAPEVLGIISPY---PFTKIQLDRSFRLSDQSVRFINNT 258

Query: 278 FSIPENAQGLSEDSTTTIRHRSS 300
           F   E+    S+     I  R  
Sbjct: 259 FLSGESYITSSKPGPKPIILRCH 281


>gi|84494621|ref|ZP_00993740.1| hypothetical protein JNB_07484 [Janibacter sp. HTCC2649]
 gi|84384114|gb|EAP99994.1| hypothetical protein JNB_07484 [Janibacter sp. HTCC2649]
          Length = 297

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 60/210 (28%), Gaps = 10/210 (4%)

Query: 726 REETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLI 785
           R    +      K+     S +   ++ P       +D                 + GL 
Sbjct: 8   RPVQSEFAGMPPKLYAASPSRLLAHVDCPRRYRMQYLDK----PRPEQRPQRAHTSFGLA 63

Query: 786 IHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS--C 843
           +H  L+  + LP  +R         +                + R      +   +    
Sbjct: 64  VHNALRDWWDLPRDRRTASAGRELVRT-SWIDVGFRDPEQSMVWRKRAQEHVVAYLGGVD 122

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
                  +   ++     + ++GRID++      + + +YKT      + +         
Sbjct: 123 PDDPPRGIERTVSFISGALRVTGRIDRLDDRDGELVVVDYKTSQKPLSDDDARTS---LP 179

Query: 904 LSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
           +++Y   +   +    L   L +V   +V 
Sbjct: 180 MALYAAAVWKMFRRPCLRVELHHVPSGEVI 209


>gi|323342308|ref|ZP_08082540.1| hypothetical protein HMPREF0357_10721 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463420|gb|EFY08614.1| hypothetical protein HMPREF0357_10721 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 810

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 64/551 (11%), Positives = 144/551 (26%), Gaps = 64/551 (11%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            +  +I  L   +   Y   +   DR      L      AL  F       L  +  ++S
Sbjct: 191 ANKSMIEPLIESIFERYGYPLKLQDRRF---ELMKSQYRALLDFAFDPN-ILQLIKAIES 246

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
             F                     E I  +      +   V            +      
Sbjct: 247 GAFGLKRR----------------EDIVTYLTHFEFELNDVFGAYDLCEETESYPDLFAL 290

Query: 504 FTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-ELEQYPPTI 561
              I       ++++      +  + L    N    +     +SL  L+   L +Y    
Sbjct: 291 QNRIQEDVVRLKEYLDEVMNLDFKETLIACYNVIKSHTHGDLTSLCSLLEKHLGEYQEET 350

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                 + + ++    + +         L               +     L         
Sbjct: 351 YLLMLEHLDSLQAHQQNISPLRIVDYCSLP--------------LIPQDHLYVVNLSAKN 396

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
            P  +SR  I+ +          E Y RL      R    L +  H    N+  +   + 
Sbjct: 397 FPSIRSRTGIIDEAYLRC----IEGYPRL----DERTQFTLRMQNHIFDHNKNMTLSYSS 448

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
                        V++    N+I+   WI  + +   P    L      +  +++ K+  
Sbjct: 449 ATYEGKGQEVSYPVEQFARENNIDLKSWILTQNTYRKPVKHHLSPTLAKELYLEDGKLIG 508

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
            + +      +            +G    E  +        G + H +++          
Sbjct: 509 SISAFQMFVNDPYQFFM-----ERGLKIREPEILKFDPRIIGTVNHAVMEYYHDNKNIDP 563

Query: 802 KNFITSY----CTKNAKLWPAKE--YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
              +         +   ++   +   +  +  +   + +           + E       
Sbjct: 564 WTDVRKVFPMTHPRYRMIYDRNQDLMEQNVDFVDASMADTTFQVVSKERWFRE------- 616

Query: 856 NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSY 915
                 I++ G ID+I  +   + + +YK+        E++      QL  Y  I + ++
Sbjct: 617 ETMFNGIVLRGIIDRIDENDHYVQVIDYKSSQLA-MTAENVKAGTQLQLLTYAMIAEKAF 675

Query: 916 PNKSLVCLLIY 926
             K  + +  Y
Sbjct: 676 -QKKCLAVYYY 685


>gi|317130551|ref|YP_004096833.1| hypothetical protein Bcell_3863 [Bacillus cellulosilyticus DSM
           2522]
 gi|315475499|gb|ADU32102.1| hypothetical protein Bcell_3863 [Bacillus cellulosilyticus DSM
           2522]
          Length = 820

 Score = 68.0 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 98/279 (35%), Gaps = 40/279 (14%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           ++    L  + S E IY        F V     ++    ++  P +  +    ++     
Sbjct: 185 IRKLL-LDADLSKETIYAT---KSAFMVEKATSFLPEHRKSELPVMTLEEMLCKELELEN 240

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF 120
                +     + L    +   N     + +   ++   +K +  E I+ RD +      
Sbjct: 241 PTIIEYDAFIQWALRDDISDIANGFP--LREIWVEINTVIKGASKERIQSRDAYLGSAAS 298

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
                +  +   + + Y+   K N   D+ DL     + L +          + ++ +H+
Sbjct: 299 AYPEKTKKMIYAVASKYDMWLKVNHYYDYNDL---AYEALSRP---------LARQYDHL 346

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI--YSFHGAEPKRVL 238
           + DEVQ+ +  Q   I            +  + +T+  +GD  QS   Y F  +  K   
Sbjct: 347 IFDEVQELTNKQLTYI----------LASTKNKQTVLLLGDVHQSTQNYQFDLSFIKN-- 394

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
                       AG     + +  ++RST++I+  ++KV
Sbjct: 395 --------DIYEAGYTLKEVFINKNYRSTSEIVQAINKV 425


>gi|260170421|ref|ZP_05756833.1| hypothetical protein BacD2_01003 [Bacteroides sp. D2]
 gi|315918777|ref|ZP_07915017.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692652|gb|EFS29487.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 959

 Score = 67.6 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 84/717 (11%), Positives = 193/717 (26%), Gaps = 105/717 (14%)

Query: 269 DILTVV-DKVFSIPENA-QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           ++L  V +  FS  ++A + L          +  +  + G           ++   N   
Sbjct: 216 NVLNKVENDFFSKLKDAGKALFYWDYDIFYTQQIKKHEAGEFLKRNLEEFPNELPENFFN 275

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                        S+ +  AR +   I  M    +  +  K++    ++ +VL  +    
Sbjct: 276 SFKEPKKIRYISASTENAQARFLPEWIKAMTDDHSQIAEEKEK----ENAVVLCNEALLL 331

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL-------SFVC 439
           P++  + + +KN     V     F L        + A      +            +   
Sbjct: 332 PVLHSIPQEVKN-----VNITMGFPLAQTPVYSFINAAMELQTNGYRSDTGRFTYEAVSA 386

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +LK P                     + +  + +      K    +  +    +  +   
Sbjct: 387 ILKHPY------TQQLSSHAGPLERELTQTNRFYPLPSELKQDDFLTTLFTPRNGIKELC 440

Query: 500 PHDF-----FTLILGAKKGRQQFISRFGNEV----IDVLDEFLNFTLRNE-QNSYSSLQE 549
            +        + I   +       ++   E        ++   +     E      +L+ 
Sbjct: 441 DYLIELIKYISTIYRKEGEYNDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKR 500

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           LI+++                 +++M V   + L+   + ++                I 
Sbjct: 501 LITKVLTSSNIPFH--GEPAIGMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIP 558

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
            +L    G+     ++              +   + E   LLY                N
Sbjct: 559 YNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAENITLLY----------------N 596

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
           TS++  +       M+         + +  L    +                   E    
Sbjct: 597 TSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEIRVEKTP------EVLRR 650

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
           + +  D       + SP   +      L        G    + + ++  +   G I H  
Sbjct: 651 LYRAYDSTHPNSVILSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEIDSALFGTIFHLS 710

Query: 790 LQV----IFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSI----------TRLLE 833
            Q     +    +  +K  +      + KL     + +K  L  +           +L+ 
Sbjct: 711 AQSAYTDLTAAGKTIQKEDLERLLRNDVKLQSYVDQAFKEELFKVSPEEKPEYNGIQLIN 770

Query: 834 N----PMMTTAMSCDSY----------SEVSVSGKINCPKKDIIIS--GRIDQISISQQN 877
           +      +   +  D             +VS    I   +    +   G ID++   +  
Sbjct: 771 SKVIVSYLKQLLRNDLQYTPFEMVAMEKKVSEEITIQTGQGPFTLRLGGTIDRMDAKEST 830

Query: 878 IFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
           + I +YKT      P  IE +         +I Q  +Y  I+        +   L+Y
Sbjct: 831 LRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQSLM-VAPALLY 886


>gi|291542613|emb|CBL15723.1| ATP-dependent nuclease, subunit B [Ruminococcus bromii L2-63]
          Length = 1112

 Score = 67.6 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 90/666 (13%), Positives = 183/666 (27%), Gaps = 123/666 (18%)

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
               +A  I +++          ++     DI V+     DT     +   +   Y+I  
Sbjct: 308 ECEYVAGKIKHLV---------IEKGYLYSDISVICH---DTEPYRGVLSEILEKYEIPY 355

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI----FKICTQR 460
             ++   +     I+ + ++ R ++   D    + +LKS L  FS ++I      +    
Sbjct: 356 FSDEHADIDVKPVIRLVNSIFRCLIYDFDREDVLALLKSGLTEFSVEEISFFENYLFVWN 415

Query: 461 HETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSP---------------- 500
                      +       +F    + V+  +  L                         
Sbjct: 416 VSGSAFKNKFVQNPKGYSDRFSDYDREVLAKVENLRESVIEPLLLFKENAKDKNGLEISK 475

Query: 501 --HDFFTLILGAKKGRQQFIS-------RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
             +     +      R+ +           G E I V + F+    +      +    + 
Sbjct: 476 LFYALLEELKVPDALRRMYAEFERSYDKSVGAEQIRVWNIFMAVLDKTAAVIGTKAMTVK 535

Query: 552 SELEQYPPTIK----RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              E     I            + V I T    +  +    FL+     +F         
Sbjct: 536 RYYELLSLQINAMQLSDIPRTIDCVTITTAQRVRISKQKASFLIGCVDGIFPA------- 588

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +P  +           + +   +  D   H    T      + Y  MT AS+ L +  +
Sbjct: 589 -IPHTSGIFSPFELKMLAMNEIELGDDFAAHNNLETF-----MAYSCMTSASEFLSVSFY 642

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP-----ENT 722
           S+                   F N     K            +   + T        +  
Sbjct: 643 SSDITGTTYQPSEIVLQCKKVFKNIIAYDKFDFDGKKESMYALRPAFDTVADMIGKGKKV 702

Query: 723 PLEREETIKQLMDEQKIPKKL-------------FSPIKNDINEPYILNPSTIDTKGKTN 769
           P    E   Q  +       L                 +    +   ++ S ++      
Sbjct: 703 PESLLEIFAQNPEYSAKLDSLINAKDKVPFKIFDKKNAEKLFGKNLNISASQLEKFNLCR 762

Query: 770 L-----------ESLLSDNQTFNRGLIIHKLLQVIF---------TLPEHKRKNFITSYC 809
                       E   ++      G I+H +L+  F         +L E K +  + +Y 
Sbjct: 763 FSYFCNYGLNVRERQRAEINPMQYGTIVHYILERFFGEYTKEEYLSLEEDKFQKIVCAYL 822

Query: 810 TKNA-KLWPAKEYK--NLLLSITRLLENP--MMTTAMSCDSYSEVSV---SGKINCPKKD 861
            + A K +  ++ +  +    +  +L+N   +M   M   S SE  V     KI      
Sbjct: 823 AEYAVKYFGEEQLESNSFTYRLKTILDNVMYLMKHIMEELSQSEFFVADCELKIGEDIPS 882

Query: 862 IIIS----------GRIDQISISQ----QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
             I           G +D++ I        + I +YKT     + +  I Y    Q+ +Y
Sbjct: 883 YTIVLPDGHKIAVCGSVDRVDIMPRADITYLRIIDYKTGTKQFK-LSDILYGINLQMLLY 941

Query: 908 EKILKD 913
              ++ 
Sbjct: 942 LHSIEA 947


>gi|182679137|ref|YP_001833283.1| double-strand break repair protein AddB [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635020|gb|ACB95794.1| double-strand break repair protein AddB [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 1076

 Score = 67.6 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/632 (8%), Positives = 158/632 (25%), Gaps = 83/632 (13%)

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS-NMIGTDTIFSNGKKRVI 371
                   +      +     ++  + ++     R +A  +   ++  +    +     +
Sbjct: 379 IEAQDERQEALALAIALREILETPGKTAALVTPDRELARRVRTELLRWNIEIDDSGGDPL 438

Query: 372 QAKDILVLVR---KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
                 +L R       + +       L  + ++S+ G  R  +       ++ A+ R  
Sbjct: 439 NTSPRGLLARLALACITSGMDAKDLAALLANEQVSL-GLGRDRIKALAPQFEI-AILR-- 494

Query: 429 LSQEDDLSFVCMLKSPLFNFSE-DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
                    +     P    +   D             +           + + + V+  
Sbjct: 495 -----SAPVMRFFDQPDIALTMARDAAFDTYAHPAKARIEAEDWDGLAQILERLRDVLSP 549

Query: 488 IHELIHIAQFCSPHDFFTLILG-----AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
           +  L              ++L      A +   Q       E  +               
Sbjct: 550 LRALRGTWPLARWIAAHRMVLDGLVRDADQTDGQDQQDRTLEAGEDAAALEALFDELSGT 609

Query: 543 SYSSLQELISELEQYPPTIKRA-----HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           +   L   ++    +   I            H  ++I+ +  A+ +++ V+ L      +
Sbjct: 610 TPQGLLFDVASYAAFFTDISGEVRLRGPRRAHPRLKILGLIEARLMQADVMLLGGLDETI 669

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           +         +   +    G+     +     +  +  +                V ++R
Sbjct: 670 WPPAAQMDAFLNRPMRAALGLTPPERRLGQATHDFTQAMGAES------------VILSR 717

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A  +              +       +   +    +  +              A + +  
Sbjct: 718 AKKR------------GGTPTVASRLIQRMAALAGDVWQSCLEQGERFLAFAEALDRTPI 765

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
           +P +   +R            +     S  + +               G   L++L +  
Sbjct: 766 NPADHRPQRPLGRPNPKPPVGLRPTHLSVTQIETLRRDPYAIFAEKILGLKALDALGAGA 825

Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
              + G+ +H +L+    L                      +    L  ++   L++P  
Sbjct: 826 DRRDDGMAVHAVLERCGKLHPTGPLPA----------DMDEQLLSWLREALAARLDDPDF 875

Query: 838 TTAMSCD-------------------SYSEVSVSGKINCPKKD---IIISGRIDQISISQ 875
           +                            EV   G++     D    +++ R D++   +
Sbjct: 876 SAFQWPRLQKAIDVYLAFEAERRDNLVRIEVETFGRLPIDLADGSRFLLTARADRLEFHR 935

Query: 876 QN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
              + + +YKT        + I      QL++
Sbjct: 936 DQSLVLVDYKTGAPPSS--KEIRTGLAPQLTL 965


>gi|229101745|ref|ZP_04232462.1| UvrD/REP helicase [Bacillus cereus Rock3-28]
 gi|228681693|gb|EEL35853.1| UvrD/REP helicase [Bacillus cereus Rock3-28]
          Length = 777

 Score = 67.6 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAAKMTVLGDFNQAIFA-HASETVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNINAFERDGEKP 638


>gi|294338118|emb|CBJ93956.1| hypothetical phage protein [Campylobacter phage CP220]
          Length = 237

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 58/184 (31%), Gaps = 32/184 (17%)

Query: 758 NPSTIDTKGKTNLE---------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
           + S IDT  K   +              N    +G  IH++L+   T             
Sbjct: 5   SFSKIDTYKKCPKQYYYRYIEKVPETQKNPALKKGSDIHEILEFHNT------------- 51

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK---KDIIIS 865
             +   +    +   +     R +++ +    +S  S  E  +    N         I  
Sbjct: 52  --EKYDIIFNSKDPEIQNIALRFIDSELGKEILSRKSLREFELFLDSNYEPCSKDTAIFV 109

Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
           G ID+I+ ++  + + +YKT  +     +        QL +Y   +        +    +
Sbjct: 110 GYIDRINTTENGLELIDYKTGKYKEPSYQDF-----TQLILYSLYMFKRLKLDEIKIRYV 164

Query: 926 YVSE 929
           YV  
Sbjct: 165 YVEH 168


>gi|73541803|ref|YP_296323.1| DNA helicase/exodeoxyribonuclease V, subunit B [Ralstonia eutropha
           JMP134]
 gi|72119216|gb|AAZ61479.1| DNA helicase/exodeoxyribonuclease V, subunit B [Ralstonia eutropha
           JMP134]
          Length = 957

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 54/561 (9%), Positives = 135/561 (24%), Gaps = 98/561 (17%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
               ++    R L       V     + L+   A   LM     ++   D  + + +LKS
Sbjct: 323 AHDRVVARRVRALLARAGAPVRDETGWKLSTTRAAAALMRWFDLLVRDGDTAALLDLLKS 382

Query: 444 PLF-----------------------NFSEDDIFKICTQRHETETVYEYIQKFANCGISK 480
           P                         +   D +  +           +          + 
Sbjct: 383 PFCLPDFPDRGAAIALIERQVRRDNVSGGWDRLRHLPRALPAALADADADDTEIKRAEAV 442

Query: 481 FQHVIKYIHELIHIAQFCS----PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFT 536
            +   + +  L   A         H     +            R      +   + L+  
Sbjct: 443 RRSAGELLTILADEAARWPRGLAQHPLSMWLGCLDGTLDALGMRAALAADEAGRQLLDAL 502

Query: 537 LRNEQNSYS--------SLQELISELEQYPPTIKRAHSANHNE--VRIMTVHTAKGLESP 586
            R +             S  E  + L     ++     +  +   + I+ ++ A+     
Sbjct: 503 ARLQDLPSDETSSHATLSQAEFRAMLSALLESVAYKEPSAASAARITILPLNGARMRRFD 562

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V +V            + M     +  +  +               +     +     E
Sbjct: 563 GVVVVGCDDAQLPSSAAELMFFSNQMRRELQLED------------RESRFAQQARDLAE 610

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                       +D +++         +  +   W + +           +  +   +  
Sbjct: 611 VLL--------NNDDVVLTWQRLGGRGEPKHVSGWIERLSACCARAGVAIEASMAPLV-- 660

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                ++              + +      Q        P +        L         
Sbjct: 661 -----HQTFAETQGMPAPAAPQLVPARWSAQAYNMLRRCPYQFFAGRMLGLA-------- 707

Query: 767 KTNLESLLSDNQTFNRGLIIHKLL-----------QVIFTLPEHKRKNFITSYCTKNAKL 815
              L+++  D +  + G ++H++L           +   T+PE +R + +          
Sbjct: 708 --GLDAVSDDLEKRDIGELLHRVLLRYHRELLARRERGETVPEAERLDRLREISDDVFGA 765

Query: 816 WPAKEYKNL--LLSITRLL-------ENPMMTTAMSCDSYSEVSVSGKINCPKKD-IIIS 865
             A++   +        +L                      E+     +  P    I ++
Sbjct: 766 LMAEDGNAIGYYRRWCEVLPSYVTWQTEREAQGWFWRGG--EIDAGVDLPMPDGKPIRLN 823

Query: 866 GRIDQISISQQNIF-IFEYKT 885
           GRID++         + +YKT
Sbjct: 824 GRIDRLDQGPGGAHAVLDYKT 844


>gi|313793887|gb|EFS41911.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1]
          Length = 751

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 52/401 (12%), Positives = 110/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              +   
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSLPPG 663

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             + +   R      + +  F  +   I +   D     D 
Sbjct: 664 APVGMTMHRAKGIEFSKMFLFGVSSRSIPMGIKDYDFDKDE 704


>gi|319780205|ref|YP_004139681.1| double-strand break repair protein AddB [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166093|gb|ADV09631.1| double-strand break repair protein AddB [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 1044

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 61/627 (9%), Positives = 160/627 (25%), Gaps = 58/627 (9%)

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS-NMI 357
            +        ++     +    +      +     +   Q ++     R +A  +S  + 
Sbjct: 347 PASDIAGAFAEVTLLEAASERDEAVAIAVALKRAVEQPGQRAALVTGDRALARRVSIELQ 406

Query: 358 GTDTIFSNGKKRVIQAKDILVLVRKRKDT--PLITFLTRFLKNDYKISVVGNDRFILTDH 415
               +  +     +       L+R   +        +       + +  +G +R  +   
Sbjct: 407 RFGVVADDSGGTPLANTPAASLLRLALEALFRPGDPVGLLSLLKHPLLGLGLERADVRHA 466

Query: 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ--KF 473
             + +L+A  R    + D +S   + ++ L              R    ++       + 
Sbjct: 467 AELIELVA-LRGGTGRPDIVSLPELFEARLTGLGGGSRQPFWFSRLTVRSIETARNLLER 525

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
               ++            +      S      L   A  G  +  +    +  + L E L
Sbjct: 526 LKQALAPLAAFRGRDDADLAALVRASVVTLENLGRIADGGLGELYA---GDAGEKLAELL 582

Query: 534 NFTLRNEQNSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
              +    +   +  E    +     P   +        + I     A+      + +  
Sbjct: 583 RGLVAASASLSFAATEWPDIMAALIAPETVKPAQGTDRNIAIWGALEARLQTVDTLVIGG 642

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               V+  K      +   +     +     +     +     +   K            
Sbjct: 643 LNEGVWPRKPESDRFMSRLMKTGIDLEPPERRIGLAAHDFQMAMGAGK------------ 690

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI-- 710
           V ++R++           + +  +    W   +     +D+  +  +  + +        
Sbjct: 691 VVLSRSAR----------AGDAPAVPSRWLQRLLTFIGSDQAAELRRRGDELLAWARALD 740

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
           A       P   P              +I      P          L P          L
Sbjct: 741 AGPRQDFAPRPQPKPPLSVRPTHFSVTEIETLRRDPYAVYARRILGLMP----------L 790

Query: 771 ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR-KNFITSYCTKNAKLWPAKEYKNLLLSIT 829
           + ++ D     RG + H +L +        R  + +          +        + ++ 
Sbjct: 791 DPVIRDPGAAERGTLFHAILHLFSGSVADPRAPDALAGLIAAGRACFAEAALPADVEAVW 850

Query: 830 ---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQN-IF 879
                     ++E            ++E   +GK    +  + +SG  D++ +       
Sbjct: 851 WPRFEKLAANIIEWERTRADAVTRRHAEER-AGKTVVGQSGVTLSGYADRVDLLAGGMAD 909

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           I +YKT     +   H       QL++
Sbjct: 910 ILDYKTGSSPSKAQAHT--LLAPQLAL 934


>gi|210629784|ref|ZP_03296128.1| hypothetical protein COLSTE_00011 [Collinsella stercoris DSM 13279]
 gi|210160811|gb|EEA91782.1| hypothetical protein COLSTE_00011 [Collinsella stercoris DSM 13279]
          Length = 303

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 48/171 (28%), Gaps = 34/171 (19%)

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            +L  L+  L         A + + + + +MTVH+AKGLE P VF+      +F H    
Sbjct: 27  KALPALLEWLALRSDLD--ALAGDTHAITMMTVHSAKGLEFPAVFVAGMEESIFPHVAGW 84

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                                                +  EE  RL YV +TRA  +L  
Sbjct: 85  TDDDP--------------------------------AKLEEERRLAYVAITRARKRLFF 112

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
              +       +        V +          I  +           +  
Sbjct: 113 TYAATRRTYGSTQANPRSRFVNEIPAEHIEFSGIGSSGFSGTGWEKRGDRR 163


>gi|163938952|ref|YP_001643836.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
 gi|163861149|gb|ABY42208.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4]
          Length = 778

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 30/163 (18%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +++   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DEICSLTVNMLDEGKLHYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAAKMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           I L  S+RST  I+     +    EN      D       ++S
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGENIHAFERDGEKPTVTKAS 644


>gi|229090091|ref|ZP_04221341.1| UvrD/REP helicase [Bacillus cereus Rock3-42]
 gi|228693168|gb|EEL46879.1| UvrD/REP helicase [Bacillus cereus Rock3-42]
          Length = 776

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLGEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGKNIHAFERDGEKP 638


>gi|21328715|gb|AAM48721.1| conserved hypothetical protein [uncultured marine proteobacterium]
          Length = 972

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 58/451 (12%), Positives = 138/451 (30%), Gaps = 45/451 (9%)

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
               +     +      ++         ++    + +   I   +  +      L+    
Sbjct: 443 TAQALLQWAEKENHYRPWVDWINANVFDQWPQGPQPLESWITHHRKLAEGLSAGLVGEDG 502

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE 571
           +  +Q   R     I+ L  +       E   Y+++   +           R  +  H+ 
Sbjct: 503 ELWEQAPGRDTKTEIENLTRYAPAAGDVELIDYTAILRGV-----LSAGQTRDQNHVHSN 557

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           + I     A+   + +V L       +         +  SL    G+ +   +     + 
Sbjct: 558 ILIWGTLEARVQSADLVILAGLNDGTWPEPPAPDPWLNRSLRLQAGLLLPERRIGLSAHD 617

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHN 691
               I                V +TR+            S++ ++    W + + +  + 
Sbjct: 618 FQQAIGAKT------------VWLTRSLR----------SDDAETVPSRWLNRIENLLNG 655

Query: 692 DERVKKIKLTN--SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
            E+       +      +EW+    +   P+  PL    ++   +  +   +   + IK+
Sbjct: 656 LEKPDDASWMDHMRARGNEWLGKVEALEEPQVAPLSIRPSVAPPVASRP-ERLAVTDIKH 714

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV------IFTLPEHKRKN 803
            I +PY +    +       L+ L        RG +IH LL+              K   
Sbjct: 715 LIRDPYAIYAKRV--LNLRRLDPLSKSPDAPLRGTLIHDLLEAFLKTGPWTNAEAAKATL 772

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITR----LLENPMMTTAMSCDSYSEVSVSGKINCPK 859
              +     + +      +  L  + R     + + M   A    + +E  + G +N P+
Sbjct: 773 LALAEERFQSTVPWPAARRMWLARVVRFAEWFVTHEMKRQARILSTKTE--IEGDVNLPE 830

Query: 860 KDIIISGRIDQI-SISQQNIFIFEYKTHHHV 889
            +  ++G  D+I  ++     I++YKT    
Sbjct: 831 LNFTLAGTADRIDLLNDGTAHIYDYKTGKPP 861


>gi|209965879|ref|YP_002298794.1| hypothetical protein RC1_2601 [Rhodospirillum centenum SW]
 gi|209959345|gb|ACI99981.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 1000

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 53/568 (9%), Positives = 129/568 (22%), Gaps = 47/568 (8%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
           +    LARR+A  +           +   R +    +   +R   D          L   
Sbjct: 363 TPDRALARRVAMALRRW---GVEVDDSAGRPLALTPVGSYLRLLADFAATPAPVGLLALL 419

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ 459
                 G      TD    + L       + +    +            +E   F    +
Sbjct: 420 KHPLAAGG-----TDPAEFRALARALERAVLRGPRPAEGFAGLRRALEAAEPRRFDGPEE 474

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R         +++      +      + + + + +       +            + +  
Sbjct: 475 RSRLAGFLLDLERRIGGLCAAMADGPRPLADWLEL--HGQAAELLAATAREPGALRVWAG 532

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
             G      L E             +    L+  L        R     H  + I+ +  
Sbjct: 533 DDGEAAARFLREAAEAARGFPDLGGADYAALVEVLMAGRAVRPR--YGLHPRLHILGLME 590

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           A+  +  +  L       +         +   +    G+P    +     +  +      
Sbjct: 591 ARLQQFDLTILGGLNEGTWPPAPPADPWMSRPMRTAFGLPAPERRIGQTAHDFAQAAGAA 650

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
           +                     L++ +            R    ++      +     + 
Sbjct: 651 E---------------------LVLTRSERVDGTPTVPSR---WLLRLDTVLEAAGLSLA 686

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
               +   +   +       +     R               +  S  + +         
Sbjct: 687 GPLRLPGRDAGHWLALQAALDWPERVRPCPPPAPAPPVAARPRRLSVTQVETWMRDPYAI 746

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHKRKNFITSYCTKNAKLWPA 818
                     LE + +D     RG  IHK L   + T P     + +        + +  
Sbjct: 747 YARHVLKLQALEPVDADPGAAERGQFIHKALDAFVRTYPRTLPPDALERLLDAGREAFGP 806

Query: 819 KEYKNLLLSIT---------RLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRID 869
              +  + +             L              +EV  + +++ P    ++S   D
Sbjct: 807 LLEQPAIRAFWWPRFERIAGWFLALEAERRGQVAVLATEVKGTLRLDGPAGPFVLSCVAD 866

Query: 870 QISISQQNIF-IFEYKTHHHVPQEIEHI 896
           +I         + +YKT          +
Sbjct: 867 RIDRLPDGALALVDYKTGTPPTARDIEL 894


>gi|302887514|ref|XP_003042645.1| hypothetical protein NECHADRAFT_81082 [Nectria haematococca mpVI
           77-13-4]
 gi|256723557|gb|EEU36932.1| hypothetical protein NECHADRAFT_81082 [Nectria haematococca mpVI
           77-13-4]
          Length = 696

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 158 DLLKKRDVSAWIRYKIDQ----EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            +L K+   A +  K+ +      + I++DE QD     + ++ S               
Sbjct: 147 AILSKQIERAVVCNKLPEWNPEPFDIIVLDEFQDCDESLFWLVNSFILANEKKLGDQ--A 204

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
             L  +GDE+QSI+ F GA+ + +    ++       + + F    L  SFR +   +  
Sbjct: 205 PCLVILGDERQSIFGFRGADERYLTLAPKLLG---PISPRPFIEAPLDQSFRLSKQTVHF 261

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
           ++K F   E      +     I  +          +   +++  + ++
Sbjct: 262 INKTFLGGEQYITSDKFGPNPIVLKCDPSDSNSLAEKLFKLIEHYGAE 309


>gi|196037388|ref|ZP_03104699.1| helicase, UvrD/Rep family [Bacillus cereus NVH0597-99]
 gi|196031630|gb|EDX70226.1| helicase, UvrD/Rep family [Bacillus cereus NVH0597-99]
          Length = 776

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +D+   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAARMTVLGDFNQAIFA-HASETVNFDTLTNLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +     N      +    
Sbjct: 602 INLTRSYRSTKPIIEFTRALVPEGNNIHAFEREGVKP 638


>gi|116249793|ref|YP_765631.1| hypothetical protein RL0027 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254441|emb|CAK05515.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 1063

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/393 (11%), Positives = 96/393 (24%), Gaps = 46/393 (11%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA-NHNEVRIM 575
               + NE  D L   L   +  +    +   + I  +            A +H  + I 
Sbjct: 584 LADLWSNEAGDALAALLGEVIDTDGQMEADGPQWIDIMAALAAGHAVKPRALSHPRLFIF 643

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+      + L       +  +      I   +  + G+     +     +     
Sbjct: 644 GTLEARLQSVDTLILGGLNEGTWPGQTANNPFIPRMMKTEIGLEPPERRIGQLAHDFE-- 701

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                              M   +  LI  +     +      R    ++       E  
Sbjct: 702 -------------------MANGTRHLIYSRALRQGSTPTVASRWLQRLLALGGEAFEAE 742

Query: 696 KKIKLTNSIN-KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
            K +    +         E        +P        +     ++ +    P        
Sbjct: 743 LKGRGNRFLQWAALIDRGEAQAPAQRPSPKPPLALQPKSYSFSEVGRLRRDPYAIYARRI 802

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP----EHKRKNFITSYCT 810
             L+P          ++    D     RG + HK++                  +    +
Sbjct: 803 LRLDP----------VDPFNRDPGAAERGTLYHKIIDRFIREAHIAGTPDAAAAMEHVLS 852

Query: 811 KNAKL------WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
           +   +        A             LE           + +EV   G +     +I +
Sbjct: 853 ELFDMEKLPPHIDAVWRPRFRAVARAFLEWEAGRRHGILKTLTEVR--GGMELEPINIRL 910

Query: 865 SGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHI 896
           +G  D+I I+   +  I +YKT ++       +
Sbjct: 911 TGVADRIDITGPHSADIIDYKTGYNPSPAQARV 943


>gi|62390644|ref|YP_226046.1| superfamily I DNA/RNA helicase [Corynebacterium glutamicum ATCC
           13032]
 gi|41325982|emb|CAF20145.1| Superfamily I DNA or RNA helicase [Corynebacterium glutamicum ATCC
           13032]
          Length = 1255

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 21/181 (11%)

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            +++IDEVQD S         + E  F  +       +L+ VGD  Q++Y F  A PK +
Sbjct: 661 KYLIIDEVQDNS---------VFEFVFALRFAAKHNTSLYLVGDSSQTLYEFRSANPKAL 711

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              +             F    L  ++RS  +IL   +   S  E  Q            
Sbjct: 712 NSLEA---------SGVFGTYRLTTNYRSNQEILDFANIHLSDIEANQFAGIQLYANSFD 762

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQ---ESWTSYFDSLPQESSASILARRIAYTIS 354
             +       V+L    VS+     +      ES  + FD+    +  +I+       I 
Sbjct: 763 APTADSFKEKVELDMHHVSKQSEFTDSIPYFMESNKARFDAAILNNEQTIVLAHSGREIR 822

Query: 355 N 355
            
Sbjct: 823 A 823


>gi|332034769|gb|EGI71309.1| hypothetical protein PH505_du00060 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 650

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/510 (14%), Positives = 151/510 (29%), Gaps = 70/510 (13%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +   K     +  +++II    + +K +    I          IL+DE QDT     
Sbjct: 138 YKEFVRIKD--GCISHDEVIILACKMYEKYEKLCTI---TKDSYPFILVDEYQDTDP--- 189

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR--INQKRATNA 251
            V++ L E+     N       +   GD  QSIY           + KR    +K     
Sbjct: 190 NVVKLLLENL----NQSPKRNIVGFFGDAMQSIYEGSVGNLNGNTQPKRITALKKEQNKQ 245

Query: 252 GQKFSIIE-------LP---------LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
           G  FS+I        L           + R+   ++ + +K+        GL ++ +  I
Sbjct: 246 GTYFSVINNLKEYTLLTPTVIEVKKVQNRRNPQLVIDLANKI-----RTDGLMQEPSEDI 300

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT--- 352
               +        Q     +  ++             FDS  +    ++    IA     
Sbjct: 301 N-APNMNADGTAKQGSALFLYSNNDDLGAVCHHLAWDFDSSIETKELNLTHNLIAGKAGF 359

Query: 353 --ISNMIGTDTIFSNGKKRV--IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
             +  +   D I  + K+    I+  DI +    R    +       L++     +    
Sbjct: 360 GDLMRIYDKDKILESIKRVKGYIKKNDIKIDTEGRTFKHVYEE-LGGLQDGTPNPLAPTK 418

Query: 409 RFILT--DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                   +  + +L      +    D++S             +D +        +  + 
Sbjct: 419 GQKEYIDANPDVYEL-----ALAQPYDEIS--------KLYIDKDMLVDDKKNTADDLSK 465

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
               +      + K +H I    E     +F    DF    +  KK  ++ +        
Sbjct: 466 PSSNRDDLIKHLFKIEHCIYLYKE-KRFNEFSRITDFSITSVADKKNLKKSMEELIKVDN 524

Query: 527 DVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSAN-----HNEVRIMTV 577
             +DE +    +     E +     +   + + Q    I                 + T 
Sbjct: 525 RSIDEVIALANQLNLVVEDDKLERFKVSRNYVYQQVCQIPYQQFRGLYQYLEGYTPLSTQ 584

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
           H  KG E P V +V   +  ++  + K + 
Sbjct: 585 HKTKGAEYPNVLVV-LDNGQWNSYNFKNLF 613


>gi|154250593|ref|YP_001411417.1| double-strand break repair protein AddB [Parvibaculum
           lavamentivorans DS-1]
 gi|154154543|gb|ABS61760.1| Double-strand break repair protein AddB [Parvibaculum
           lavamentivorans DS-1]
          Length = 1001

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/462 (11%), Positives = 116/462 (25%), Gaps = 64/462 (13%)

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
                 + +    G    D + E +  T                 L      + R     
Sbjct: 524 TETGAERLWKGEAGEAAADFIRELMEATPAFGDIDPRFYPHFFDVL--LSGRVLRPRWGR 581

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
           H+ + I     A+   +  + L       +  +      +   +    G+     +    
Sbjct: 582 HSRLFIWGPLEARLQHADRMILGGLNEGTWPAEANIDPWLNRPMRATMGLEPPERRIGLA 641

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            +  ++     +                       + +            R W  +    
Sbjct: 642 AHDFAEGASAGEA---------------------FLTRALKVEGAPTVASRWWLRLASLL 680

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
              ++              +              P+   E   Q     +I   +  P  
Sbjct: 681 QGLEQEEAVSAPQWWQWAHKLDEPAKVLTPLRPRPVPPLEARPQRFSVTEIETLIRDPYA 740

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITS 807
               +   L            L+ L +D     RG IIH+ L+  +   P    +N +  
Sbjct: 741 IYARKILGLKV----------LDPLDADIAAAERGTIIHEALEKFVEAYPRDLPENALQE 790

Query: 808 YC---------TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCP 858
                              A  +   L     +++      A     ++E      I   
Sbjct: 791 LINVGEEAFRQAIGRPGVAAFWWPRFLRIAKWIVDYEQEERAGLRHIHAETRGEILIAEL 850

Query: 859 KKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD---- 913
            + +++SG+ D+I   +  +  I +YKT       I+ +      QL +   ++      
Sbjct: 851 AQPVVLSGKADRIDEREDGMVNIVDYKTGTVP--SIKQVEIGLTPQLPLEAAMMARGGFR 908

Query: 914 ------SYPNKSLVCLLIYVS------EPKVFIIPQNKLNKA 943
                   P K+    LIY+         +V  IP    + A
Sbjct: 909 TKDGAPIPPAKA--ASLIYLRLTGGETAGEVRAIPDEGADLA 948


>gi|169824300|ref|YP_001691911.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328]
 gi|167831105|dbj|BAG08021.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328]
          Length = 893

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/666 (10%), Positives = 186/666 (27%), Gaps = 57/666 (8%)

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ---CNPQQESWTS 331
           +      ++           I     +  +   + ++  V   ++ +    N  Q+    
Sbjct: 170 NFNIQKNKDIYIHGFSEFRPIELEVIKQLENYDINVYVFVDYYNEYKSKLANQLQDIGFE 229

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKRKDTPLI 389
              +  + +    + +++    + ++  D +         +     + +L+ K       
Sbjct: 230 VVQNDEKSNPNKFIEKKVVKLTNEILEKDRLIDEIANDSYIYDYNKMAILLEKDSSKR-- 287

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
             +   LK  + I V G+D     D+    D++ L     ++        +L S    F 
Sbjct: 288 -EILNTLKL-HDIPVFGDDYISYRDYKIFSDIINLLD--KNRSFKQYIFSLLDSCFLEFD 343

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ------FCSPHDF 503
             D         + +       +        +   +K + ++                + 
Sbjct: 344 LKDKINFRNILSDFDFDKWEDLEKILKLNVNYGTNLKILEKIKSYYHSFIETDNMILSNL 403

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
             L+   +   +    +   E + ++ E L+ T         ++   +  ++        
Sbjct: 404 IELVQQKES--EDVGFKLFAEKLLIILEDLDKTHDELVKKSKNINSYL--IDLIKILKVD 459

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
           +     + +RI ++   +     V+++V+    V   K                      
Sbjct: 460 STDYLVDGIRIYSLTDIRLSNYDVLYVVNMNDDVIPGKMNYDFFNNEDNIVFLQKNGIDI 519

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
            S + N   +        S  +    L Y   +    +LI+ K+   + +          
Sbjct: 520 LSDADNRRRNIDRFIDAVSRADSKIYLSYNTESNVKSRLILDKNIKQNQKIAKINSQNIK 579

Query: 684 MVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            V     +     +K  L   +N+ E           E      +  + + +   K+   
Sbjct: 580 KVDTKKLHSISVYEKYSLKQHLNRIESRISSKDISDFEVDDKTTQYILSKELSSTKLETY 639

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
              P+K        L P                     + G I+H  L+  + +   + K
Sbjct: 640 FECPMKFYFRYYLKLRPQIKSRL--------------LDIGTILHNTLEEFYGINISQIK 685

Query: 803 NFITSYCTKNAKLWP-------------------AKEYKNLLLSITRLLENPMMTTAMSC 843
           + I   C  +                          +Y+  L  +   +   +       
Sbjct: 686 DAIDGKCELDISSLDGLLKNSFEKFGLNTDIKENEFDYEKYLNKLKDFVRTDIYNMKNEP 745

Query: 844 DSYSEVSVSGKINCP-KKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHI 901
           + +    +         +    +GRID++  +    I + +YK   +  ++ + +     
Sbjct: 746 EKFYPFKLEEDFIISLDESTKFTGRIDRVDKTDSGKIRLIDYKLSKNSFRKAKDLDKNKG 805

Query: 902 AQLSIY 907
            Q +IY
Sbjct: 806 FQFAIY 811


>gi|300712060|ref|YP_003737874.1| repair helicase [Halalkalicoccus jeotgali B3]
 gi|299125743|gb|ADJ16082.1| repair helicase [Halalkalicoccus jeotgali B3]
          Length = 612

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 35/191 (18%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +   K +  ++ F D++                +  +   ++ ++IDE QD + +Q+
Sbjct: 189 IRAWRAFKGEEGLVGFADMLERV------------EQRSLVPNVDFLVIDEFQDITTLQY 236

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            V                    +   GD+ Q +Y++ GA+P  +L  +  +         
Sbjct: 237 AVYEEWKPHMEG----------VLIAGDDDQVVYAWQGADPNLLLDAEVDDDN------- 279

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                 LP S+R  + IL VV++     E  Q    +         + +     + L   
Sbjct: 280 -----VLPNSYRLPSRILDVVNREVRHIEKRQEKDLNPRKEGGKVEA-VESPSMLDLVRN 333

Query: 314 VVSQHDSQCNP 324
           V +      + 
Sbjct: 334 VRATVAETPDE 344



 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 21/145 (14%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             A+   VR+ T+H+AKG E+  VF+    ++    +    +       ++       P 
Sbjct: 488 EGADPERVRVGTIHSAKGREADHVFVATDLTEKVVEQMAATIEQEAVPIEEEFTRTTSPV 547

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
               +N                  R+ YVGM+RA ++L++       N          D+
Sbjct: 548 PMLTDN----------------ERRVFYVGMSRARERLVLM-----ENLVNGAPTLPLDV 586

Query: 685 VYDSFHNDERVKKIKLTNSINKDEW 709
           +  +   +E ++++    +  + E 
Sbjct: 587 LLCNEPREEPIEELIAEANAPEAEV 611


>gi|294497407|ref|YP_003561107.1| ATP-dependent nuclease subunit B [Bacillus megaterium QM B1551]
 gi|294347344|gb|ADE67673.1| ATP-dependent nuclease, subunit B [Bacillus megaterium QM B1551]
          Length = 1166

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 79/755 (10%), Positives = 201/755 (26%), Gaps = 169/755 (22%)

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
           G+          +           L      +   +   + E+       L    S    
Sbjct: 267 GIEIQEPIVFNEQKRHQNSPELAYLERYYDERPTPEFQSEPENI-----QLLPAVSRRAE 321

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              IA  + +++           R  + +DI ++VR          L + +  DY+I   
Sbjct: 322 VEGIAREVLSLVRD---------RGYRYRDIALIVRN---AEDYHDLLQTIFRDYEIPYF 369

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
            + +  +  H  ++ + ++   +       +    +K+ L      D+ ++  +  E E 
Sbjct: 370 IDQKRAMFHHPLVEFVRSVLEVVSGSWRYETIFRAVKTDLLFPLSSDVHQLREEMDELEN 429

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHI---------AQFCSPHDFFTLILGAKKGRQQ 516
                    +   SK     +    L  +         A     ++   +I+      QQ
Sbjct: 430 YVLAYGIQGSKWTSKEPFTYRKYRSLEDMNLGKTDEELAFEQKINELKNMIVPPIYSLQQ 489

Query: 517 FISR--FGNEVIDVLDEFL----------------------NFTLRNEQNSYSSLQELIS 552
            + +   G E  + L  FL                           +EQ   + L     
Sbjct: 490 KLKQGKIGKEKAEALYRFLTNLDIPQKIEALRNRCEEEGKLQEAREHEQVWKAILHLFDQ 549

Query: 553 ELEQYPPT------------------IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +E                                ++V + +   ++  +    F++   
Sbjct: 550 FVEMMGEEKVSISLFADLFETGLDSMQFALVPPALDQVVVASFERSRLSDIKASFVLGVN 609

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V   K      +               + + +      L+    +    +   L+Y+ 
Sbjct: 610 DGVIPAKPKSDGLLSE-------------KEREQLLESGLLLAPTGRQKLFDEQFLIYLA 656

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           ++ +S++L +         K        + V + F   +    +     + +++ + Y  
Sbjct: 657 LSSSSEKLYVSYPLANEEGKTLLPSLVINRVKELFPLLQEKLLMTEPTDLEEEKQVDYIT 716

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN----------------EPYIL- 757
           +          + +  K+          +++    + +                E   L 
Sbjct: 717 NPLTSIAHLASQLQGWKRHYPMSSAWWDVYNFYVENPDWNSYSEKVLSSLFYQNEAKRLT 776

Query: 758 --------------NPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQV 792
                         + S ++                  E  +      + G + H  L++
Sbjct: 777 KKTSQRLYGKHIQASVSRMEKFEACPYAHFASHGLKLKERKVFKLAAPDIGELFHAALKM 836

Query: 793 IFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT------RLLENPMMTTAMSC 843
           I       + + KN     C + +     +    L   I         L +  +   +  
Sbjct: 837 ISDELRGGQKEWKNLTRKDCQQLSTAAVHELAPRLQNEILLSSNRHHYLTH-KLQQIIER 895

Query: 844 DSY-----------------------SEVSVSGKINCPKKDII-ISGRIDQISISQQN-- 877
            S                        +E+  S +   P    + + GRID++  ++ +  
Sbjct: 896 ASLVLSEHAKMSGFVPVGLELGFGPSAELP-SMQFTLPNGHTMELVGRIDRVDKAESSKG 954

Query: 878 --IFIFEYKTHHHVPQEIEHIPYTHI---AQLSIY 907
             + I +YK+      +  ++   +     Q+  Y
Sbjct: 955 LLLRIVDYKS----SDKALNLVEVYYGLSLQILAY 985


>gi|293376636|ref|ZP_06622864.1| hypothetical protein CUW_0136 [Turicibacter sanguinis PC909]
 gi|292644862|gb|EFF62944.1| hypothetical protein CUW_0136 [Turicibacter sanguinis PC909]
          Length = 845

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/488 (13%), Positives = 148/488 (30%), Gaps = 43/488 (8%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            ++ ++ + +++  Y+  +       L   L   Y+        +D  DL   +  LL+K
Sbjct: 381 EKEIYLSLDEQYCVYERKQR-----ELLYELAVRYQFFLDDEKKVDENDL---SRALLQK 432

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 I  K     ++++ DE+QD + IQ   +  L+ +             L   GD 
Sbjct: 433 ------IIKKEVNLFDYVIADEIQDLTEIQIYCLIRLSRN----------RNQLLFSGDI 476

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q+I       P      +  +  + +N    F   +L  ++RST +++ + +KV  +  
Sbjct: 477 NQTI------RPTYFHTGRVESIMKTSNTHLGFLKHQLVKNYRSTKEVVDLANKVVDLRI 530

Query: 283 NAQGLSEDSTTT------IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
              GL++ +         + H    +       + + + +   ++               
Sbjct: 531 KRLGLNKKNDYHEIAIRGLSHAVYYLQSTNPQNVIKLIETGL-NRHYVAIVVPDEAEKRN 589

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +  +    A      I   I  D I         ++    +L           +    L
Sbjct: 590 LERLTQVKGAVFTVEEIKG-IEKDYIICYNVMSKFKSLWETILNTDVMHQNQYRYYFNLL 648

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                            +      L       L    +     +  S +   S++  +K 
Sbjct: 649 YVAI---TRARQHLCFVEEDMPPSLFEYLSDELLIFSEFDESALKLSQIS--SDNQFYKE 703

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
            T     E   + I ++    +   +H IK    L+   +         L+   +  +  
Sbjct: 704 ATLYERRELYEQAITEYELSKLEVAKHDIKRCQALMKNREGQHIEAGIELLKLKEFEQAA 763

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
              R G +V+  L   +      E+     L   I ++  Y        S      ++  
Sbjct: 764 NCFRQGQDVLRYLQALVYQDCPFEKIQEELLTFGIEDVISYVYLQPTRVSWLRRFNKLYA 823

Query: 577 VHTAKGLE 584
           +H  K  +
Sbjct: 824 IHLTKRTQ 831


>gi|330952482|gb|EGH52742.1| hypothetical protein PSYCIT7_14129 [Pseudomonas syringae Cit 7]
          Length = 643

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/584 (11%), Positives = 158/584 (27%), Gaps = 94/584 (16%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK------YLNAHYEEAK 141
           ++ ++  +L+E+ K       +     N     +   +  T+A        + + Y    
Sbjct: 114 DLRRRITELEEEFKNYSSRVRQTTRDRNKADQQRYARSLETIAGVKTFNYGVGSDY---- 169

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
               VL  ED++   + LL+ R +   +   +      + IDE QDT          + +
Sbjct: 170 -AKGVLGHEDILQLADFLLQNRPLFRRV---VALNFPFVFIDESQDTFPS-------VVK 218

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            F   +        L   GD  Q+I+     +       +                I  P
Sbjct: 219 SFKEVEAQMRRKFCLGFFGDPMQAIFMRGSGDIPLEDHWRA---------------ITKP 263

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            +FR    IL V + V +  +   G+ +      R         G+ +++    + +  +
Sbjct: 264 ENFRCAKQILDVANAVRAQGD---GMEQVRGLHERVDGELKPVEGSARMFVLPNTLNRIE 320

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              +  +W++  ++  +  +   +A +I   +  M   + +   G    +  K       
Sbjct: 321 ALARIRAWSAATNN-DEGWTTPDIALKILVIVHRM-AANRLGFGGIYSALNDK------- 371

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                     + + +++     V     F L                +   ++ + + +L
Sbjct: 372 ------TSEGMKQGMQDGTGWPVRPLLSFALP-----------IVAAVKAGNEFAAMNLL 414

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           +      +   +          E      +  A             I ++          
Sbjct: 415 RKFSPRLAPVALTGRRAAAVLRELHAAMSRLVAM-----LDEAGTTIGDIALHLFDTGLF 469

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
           +F    +      +                             SS   +    +     +
Sbjct: 470 EFDDRYVRVLGFVRDVADAAQEP---------EAADAVPAEGLSSDAAMAKFFKCSAQEL 520

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                         T H  KG +   V +V    +   ++      +  S          
Sbjct: 521 WPYERYVSEGSPYATQHGVKGAQFERVMVV-MDEEESDYRTYNYERVFASAEARAADRAR 579

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                              ++T     RLLYV  TRA   L++ 
Sbjct: 580 ALGG--------------DENTWSRTLRLLYVCCTRAQRGLVLT 609


>gi|219559253|ref|ZP_03538329.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17]
          Length = 356

 Score = 67.6 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 18/135 (13%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
             +  +         +    +   L +            L     E      V+DF   +
Sbjct: 214 ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 273

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 274 ASAARLAATSP---QVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 324

Query: 214 RTLFAVGDEKQSIYS 228
             L AVGD  QSIY 
Sbjct: 325 LALTAVGDPIQSIYG 339


>gi|114769725|ref|ZP_01447335.1| hypothetical protein OM2255_09161 [alpha proteobacterium HTCC2255]
 gi|114549430|gb|EAU52312.1| hypothetical protein OM2255_09161 [alpha proteobacterium HTCC2255]
          Length = 985

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/455 (11%), Positives = 132/455 (29%), Gaps = 49/455 (10%)

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           + +    Q   +    +    +  + +          +D    +     G+    +    
Sbjct: 470 KWLTRIFQPLRDAKEMELSEWLNLLKKTAETLSSSPENDIDAKVWEKDSGKAALKT---- 525

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKG 582
                LD+ L+ ++    +   S  E  + L       ++    + +  + I     A+ 
Sbjct: 526 -----LDQILHQSV---SSGIMSNIEFNAFLRSILSQELRSETQSANPLISIWGTLEARV 577

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
               +V L       +  K    M +   +     + +   +     +     +      
Sbjct: 578 QSKDLVILGGLNEDTWPSKPNHDMWLNRDMRKQLSLLLPERRIGLSAHDFQQAVSAH--- 634

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                     V ++R+  +           +  S    W   + +     +      L  
Sbjct: 635 ---------NVVLSRSLRE----------GDTPSTPSRWLIRITNLMQGLKNEGPNALDE 675

Query: 703 -SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ--KIPKKLFSPIKNDINEPYILNP 759
              N ++W+ Y  S    + T     ET    +  +  ++ K   + IK+ + +PY +  
Sbjct: 676 MRNNGNQWLTYARSLDRVDETKKIPFETRPSPIPPENARLEKLSVTQIKDLVRDPYKIYA 735

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK------NA 813
           S I       L+ L        RG  IH +L+      +++     ++   K        
Sbjct: 736 SVI--LKLKKLDPLGKQADAIERGNTIHTILEEFIRQTQNELPENASNLFMKITNEVLKK 793

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS--GKINCPKKDIIISGRIDQI 871
            +      +  L  +  +  + +            +++   G+I+       ++ + D+I
Sbjct: 794 DVPWPAAQRLWLARMQAISSSFIEEEIKRRAVGINIALERYGEIDFQDLKFKLTAKADRI 853

Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
              +  + +++YK                  QL  
Sbjct: 854 DQGKNGLRLYDYKASKPPSLGDIQYFDK-QLQLEA 887


>gi|300787936|ref|YP_003768227.1| UvrD/REP helicase [Amycolatopsis mediterranei U32]
 gi|299797450|gb|ADJ47825.1| UvrD/REP helicase [Amycolatopsis mediterranei U32]
          Length = 657

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/324 (11%), Positives = 93/324 (28%), Gaps = 48/324 (14%)

Query: 28  VSDINKYVSLSMETGNPTILKKAQ--TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNII 85
           V  +      +     P    +A+   L    +         +       +    +    
Sbjct: 261 VRTLPPVHEAAFRRLAPEFGDRAEFVHLHAWVRRFLTARERPVDVDARGVRTAFGRAWSR 320

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIR----------DRFNTYKMFKSTLASLTLAKYLNA 135
            + + +      E  +   D  IK R                +  +              
Sbjct: 321 HRAVLEPIERHDEYWRTEIDRVIKGRGFTTLEQYRRPAVRRGRELRLGPEQKAAVWQFYE 380

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+E   +  + D+ D+I      L+++         ++     +++DEVQD +L    +
Sbjct: 381 TYQEMLAERGLHDYNDVIDIALAELRRQP--------LETRYAAVVVDEVQDITLNGLRL 432

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY--SFHGAEPKRVLREKRINQKRATNAGQ 253
           I+ L           + P  L  VGD +Q +Y   +  ++    +  +            
Sbjct: 433 IKELAG---------TGPNQLLLVGDGQQQVYPGGWRLSDAGIPVLGRGE---------- 473

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
                 L +++R+  ++L    +  +  E      + ++      +      GT   W  
Sbjct: 474 -----VLRVNYRNRTEVLAFAQRFDARNEV--DDLDGASGVALKNAEAGNTGGTAVSWRG 526

Query: 314 VVSQHDSQCNPQQESWTSYFDSLP 337
             +   ++   +    T+      
Sbjct: 527 TEADLAAELTRRIAGLTAPLGQTA 550


>gi|326792246|ref|YP_004310067.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
 gi|326543010|gb|ADZ84869.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427]
          Length = 761

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 18/199 (9%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           ++  HI++DE QD   ++  V+R             S+      VGD  Q IY + G   
Sbjct: 524 RQYAHIVVDEAQDLDEMKLLVLRK-----------ASTNDAFTLVGDLAQGIYGYKG--- 569

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +   +R+  +     G+ +   E+  S+RST +I+ + +KV    ++   L       
Sbjct: 570 --INNWQRVMDRVFE--GKSYHYFEMTTSYRSTIEIIELANKVLGANKDHPVLLAQPVFR 625

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
             HR   I  +  +    Q+ ++          S       L +        R+    I 
Sbjct: 626 HGHRPELIRCISEMDRVNQIYNKIKVYEEQGLASICVITKDLAEGEDLYRALRKKGLEIE 685

Query: 355 NMIGTDTIFSNGKKRVIQA 373
            +   +  ++     +   
Sbjct: 686 WLQDEEEQYNGQVAVMPSY 704


>gi|281490501|ref|YP_003352481.1| ATP-dependent nuclease subunit B [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374319|gb|ADA63852.1| ATP-dependent nuclease, subunit B [Lactococcus lactis subsp. lactis
           KF147]
          Length = 1099

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 85/739 (11%), Positives = 193/739 (26%), Gaps = 126/739 (17%)

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +         +   S         +L +       S  N +  S  + +  + +  + 
Sbjct: 244 RFRSKFPVELRKMAFSSVNEVYNKLTKLLDLDSRFAISDQNIEINSADAKYFRIWEAENQ 303

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            +    +A  I   I                KD  VLV    D        + +   Y+I
Sbjct: 304 KVEIEGVAKEIRQKISQGAF----------FKDFTVLV---GDPAAYEITLKEIFELYEI 350

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--------FSEDDIF 454
                    ++ H  +    +L     +       V +LKS ++             + +
Sbjct: 351 PFFYAQEESMSQHPLVIFFESLLSIKKNNYRTDDVVNLLKSKVYTDVNLDEEVIDYFEYY 410

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIK-----------YIHELIHIAQFCSPHDF 503
               +    +   E   +     I     + +           ++             D 
Sbjct: 411 VQKYKISGRKKFTEAFNESEFSKIELVNQLRENLLGNDSPLQAFLGTNRQKTGKKWVSDL 470

Query: 504 FTLILGAKK--------GRQQFISRFGNEVID-----------VLDEFLNFTLRNEQNSY 544
              +L               +  S   +++ D           +L+EFL           
Sbjct: 471 --QVLLENGNVMANMNTYFSEAESENKHQMADKHEQVWQMLISILNEFLAV---FSDEKL 525

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            S++ L   L        R   AN + V I      +   +  ++ +      F      
Sbjct: 526 KSVEFLDILLAGLKNAKYRQIPANVDVVNIKDYELVEPKTNKYIYAIGLSQTNFPRIKKN 585

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
              +           + I Q+   N  +  L     +  Q     L+        + L++
Sbjct: 586 STLLSDEE------RLEINQTTDENQFIEQLNVVNYQKNQFTVLSLVNSA----KETLVL 635

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                 +NE+      +   +  S     +  +        +    +    +   +    
Sbjct: 636 SMPQIMANEQGEFSPVFQLFLNHSDEKILQKIQEVNLFESLEHIGNSRSVISMIGKIERE 695

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--------------------------- 757
             E   K               +K++ +   IL                           
Sbjct: 696 LVETEEKNDDKRVFWSSIFRILVKSNPDFQKILLDLAKDIDTVNLSKETLDKIYGDKLYA 755

Query: 758 NPSTIDTKGKTNLESLLSDNQTFN-----------RGLIIHKLLQVIFTLPEHKRKNFIT 806
           + S+ +       +  L                   G   H++ + +        +NF  
Sbjct: 756 SVSSFERFYNCEYQYFLETTLGLETFENIDINSKIVGNFFHEVFEKVMQEEALSAENFDE 815

Query: 807 --------------SYCTKNA-KLWPAKEYKNLLLSITRLLE----NPMMTTAMSCDSYS 847
                          Y T++A   +     + ++     +L+       + T ++  S+ 
Sbjct: 816 KLTKVLHDVDSNYSRYFTQDATARFTWTNLEEIVRQTATVLKETVSTDELKTLLTESSFG 875

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            +  S   N    DI + GRID++     +     +YK+  H  + ++        Q   
Sbjct: 876 -LPKSELGNFSVDDIYLRGRIDRLDQLSSDYLGAIDYKSSAHSFK-LQDAYDGLSLQFMT 933

Query: 907 YEKILKDSYPNKSLVCLLI 925
           Y  ++K+++PN+ +   L 
Sbjct: 934 YLDVIKEAFPNQKIWGALY 952


>gi|110801600|ref|YP_698907.1| ATP-dependent DNA helicase UvrD [Clostridium perfringens SM101]
 gi|110682101|gb|ABG85471.1| ATP-dependent DNA helicase, UvrD/REP family [Clostridium
           perfringens SM101]
          Length = 763

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 62/209 (29%), Gaps = 33/209 (15%)

Query: 134 NAHYEEAKKKNCV----LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
            A Y      N +    +D ++L        +   +      K      HI+IDE QD S
Sbjct: 491 LAEYMRENLANNIDKKIIDSDNLAAMLYLKFRIEGIEESSLLK------HIVIDEAQDYS 544

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
           ++Q  V+  +              ++L  VGD  Q IYSF G             ++   
Sbjct: 545 MLQLYVMSMIAS-----------GKSLTIVGDIGQGIYSFKG---------INDWKEAIK 584

Query: 250 -NAGQKFSIIELPLSFRSTADILTVVDKVF--SIPENAQGLSEDSTTTIRHRSSRIGQVG 306
               +      L  S+RST +I+   +KV                   +           
Sbjct: 585 LVYDENAEYKHLSQSYRSTVEIINYANKVLVKQNTYEEPAKPVLRHGMVPEEIEFNNAKE 644

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             +  + +V +   +            D 
Sbjct: 645 FCERLDNIVKKVKDEGKTSIAIVGKTLDE 673


>gi|229822912|ref|ZP_04448982.1| hypothetical protein GCWU000282_00204 [Catonella morbi ATCC 51271]
 gi|229787725|gb|EEP23839.1| hypothetical protein GCWU000282_00204 [Catonella morbi ATCC 51271]
          Length = 1178

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 75/736 (10%), Positives = 184/736 (25%), Gaps = 148/736 (20%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            +  +     R  +  I  ++  +           + +DILVL R   D      L   L 
Sbjct: 316  EHDAIQTEVRHTSNKIHQLVSQE---------GYRYRDILVLTR---DMDRYRPLVTALF 363

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRF----------------------------IL 429
                I    +   I+  H  +  L +  +                               
Sbjct: 364  EQNDIPYFYDHAVIMGQHPLVLWLESGLKLYRYRYQLADIFGILKSGLWLPADLRAAMAE 423

Query: 430  SQED------------DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            + +D            DL    +L +    +    +                  +     
Sbjct: 424  NPQDGPVLEEEFKAQVDLLENVVLANGYVGYRFAQLSFEWRFDQADRPYVNAAGQVTGQT 483

Query: 478  ISKF-----QHVIKYIHELIHIAQFCS-----PHDFFTLILGAKKGRQQFISRFGNEVID 527
              +      +  +        +AQ  S       ++    L     + + I+R    +  
Sbjct: 484  YGQVVQALRESFLADFAPYQDLAQLTSFSGQKAAEWLYQWLEEVGVKDRLIARRDQAIEK 543

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISE---------------LEQYPPTIKRAHSANHNEV 572
                      +  Q   +SL E                   L               ++V
Sbjct: 544  GDLALSRQYEQVWQTLTASLDEFYQLYGEAELTFSEFQELLLTGLNEATFHIIPPALDQV 603

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
             + ++ + +     V F++          H +   +  +     G  +   Q   +++  
Sbjct: 604  MVTSMESPQVQAYKVCFVLGADELTLPKHHQEDSLLSVANRQSLGESLLPYQQLRQSSQH 663

Query: 633  SDLIKHLKKST----QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            +  ++ L          +   L YV M +    + +  +     ++       Y      
Sbjct: 664  NYSLELLMTQQVLLSASDRLYLSYVAM-KGQQTVKLSPYLQQLAKQFHLPIKTYTHTLIH 722

Query: 689  FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER-EETIKQLMDEQKIPKKLFSPI 747
             +  +  +       +     +         ++ P     + +  +  +      L + +
Sbjct: 723  QNQVKLSRLEFGRYPVQMSSLLQLVHHYSQQKDRPSAAFLDFLTLMASQNPHTWVLLAQL 782

Query: 748  KNDINEPYILNP---------------STIDTKGKTN-----------LESLLSDNQTFN 781
                  P  L P               S ++   +                   +     
Sbjct: 783  FQFNQLPQNLTPETALALFGQKMTASVSKLEQYYQDPYSHFLLYGLKIRPRQQLELNAAG 842

Query: 782  RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA---------KEYKNLLLSITRLL 832
             G   H  L   FT  +  R +F T++ +    +                 +   + + L
Sbjct: 843  AGDYYHDFLDK-FTQAQEARPDFETNFASIQTLMAEDLRFNIFGTNPRMHLIKRKLDQHL 901

Query: 833  ENPMMTTAMSCDSYSEVSVSGKI------------NCPKKDIIISGRIDQISISQ--QNI 878
               +  +     + +   V+ ++               K  + + G+ID+I         
Sbjct: 902  RQFLNVSLAQSQALTVQPVATELVFGSKQEAGLILPLDKGSLTLRGKIDRIDADPSQNYY 961

Query: 879  FIFEYKTHHHVPQEIEHIPYTHI---AQLSIYEKILKDSYPNKSLVCLLI------Y--V 927
             + +YK+          +   +     Q+  Y K+    YP+   V          +  V
Sbjct: 962  QVVDYKSGKKTFN----LVDFYYGLDLQVLTYLKVASQRYPHAQAVGAFYQSLAGGFVKV 1017

Query: 928  SEPKVFIIPQNKLNKA 943
               ++  + Q+ L+ A
Sbjct: 1018 DGKQMARLSQDGLDLA 1033


>gi|239826205|ref|YP_002948829.1| ATP-dependent nuclease subunit B [Geobacillus sp. WCH70]
 gi|239806498|gb|ACS23563.1| ATP-dependent nuclease subunit B [Geobacillus sp. WCH70]
          Length = 1171

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 72/724 (9%), Positives = 194/724 (26%), Gaps = 160/724 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            + ++       IA  I +++           +  + +DI ++VR  +D      L + + 
Sbjct: 322  EAANRRAEIEAIAREIVHLVRD---------KGYRYRDIALIVRNTEDYR---DLVKTIF 369

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
             D+ I    +++  +  H  I+ L A    I S+    S    +K+ L    E+DI  + 
Sbjct: 370  YDFHIPYFMDEKEPMHHHPLIELLRASMEIITSRWRYESVFRAIKTDLLFPVEEDIVALR 429

Query: 458  TQRHETETVYEYI----------------------------QKFANCGISKFQHVIKYI- 488
                + E                                           K       I 
Sbjct: 430  EAMDQLENYVLAYGIKGEKWTNGERWTYRRYQALEGLSIPQTDEEKQYEEKLNEWRDIIA 489

Query: 489  -------HELIHIAQFCSPHDFFTLILGAKKGRQQFI--------------SRFGNEVID 527
                     +       S  +   L L   +  ++                +R   +V +
Sbjct: 490  APLSKLERRMRRAKGGRSLCEAIYLFLEELQIPRKLEKMSKEAEEQGRLMEARQHEQVWN 549

Query: 528  VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESP 586
             + + LN  +    +    + E    +E     ++ +      ++V I  +  ++ ++  
Sbjct: 550  AVIDLLNQYVEMLGDESIPVTEFAKIIETGLDRLEFSLVPPAMDQVIIAQLDRSRLIDVK 609

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
              F++     +   K  +   +  +  +             R  +  +            
Sbjct: 610  CAFIIGVNEGIIPAKAKEDGLLAETERELLQQFGTRVAPGGREQLFYEPFFI-------- 661

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR----TWYDMVYDSFHNDERVKKIKLTN 702
                 Y+ +T  S++L +         K  +         D+  +          +    
Sbjct: 662  -----YLALTSPSERLYVTYPLANEEGKALSPSIIIKHLTDLFPNLQKRVCGNDPLDAPF 716

Query: 703  SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL----- 757
            +   +       +  +        +           +     S  +   +    +     
Sbjct: 717  AEQHEFVTVPRATLTYLVTQLQAWKRNYSIAPLWWDVYNFYVSDQQWRSHARKAIAGVFY 776

Query: 758  ----------------------NPSTIDTKGKTNL-----------ESLLSDNQTFNRGL 784
                                  + S ++   K              E  +      + G 
Sbjct: 777  TNEATPLKKEISKRLYGKKIQASVSRMEQFQKCPFSHFVSHGLRLKERAVFRLDAPDIGQ 836

Query: 785  IIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR--LLENPM------ 836
            + H  L++I       + ++      K  +    +  + +   I +  LL +        
Sbjct: 837  LFHSALKIISDRLREAKIDW-RHLSKKQCEQLSMEAVEQIAPLIQQQILLSSNRYYYMKR 895

Query: 837  -MTTAMSC--DSYSE-------VSVSGKINCPKKDII--------------ISGRIDQIS 872
             +   ++   +  SE       V +  ++      ++              + GRID++ 
Sbjct: 896  KLQNVIARTTNVLSEHAKASSFVPIGLELEFGPNGVLPPLTFRLPDGTVMELVGRIDRVD 955

Query: 873  ISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLVCLL 924
             ++ +    + + +YK+       +  + Y    Q+  Y  I+    +     ++    +
Sbjct: 956  KAESSRGVLLRVIDYKSSAKT-LNLTEVYYGLALQMLTYLDIVLTYAEQLVGKEAFPAGI 1014

Query: 925  IYVS 928
            +Y  
Sbjct: 1015 LYFH 1018


>gi|323692611|ref|ZP_08106843.1| hypothetical protein HMPREF9475_01706 [Clostridium symbiosum
           WAL-14673]
 gi|323503308|gb|EGB19138.1| hypothetical protein HMPREF9475_01706 [Clostridium symbiosum
           WAL-14673]
          Length = 793

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/621 (9%), Positives = 162/621 (26%), Gaps = 107/621 (17%)

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ----------EDDLSFVCM 440
            L R      + +      F       + D   +   + +             D+++  +
Sbjct: 7   ELLRAALEVMQKNFSYESMFRYLKTGLVTDKQEMLSRLENYALALGIRSFKRWDMAWEAV 66

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
                      ++ ++   R E  T    ++       S  +   + +   +        
Sbjct: 67  ----YRGAELINLEELNAFREEILTPLRPLKDVFGSRKSTVREKTEALVHFLEALHIEEK 122

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPT 560
              +          +  + +  ++V  ++    +       +     +E    L+     
Sbjct: 123 LQDYEAEFRETG--EVSLEKEYSQVYGLVITLFDRITALLGDEAVGKKEYSDILDAGFEE 180

Query: 561 IKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
           IK        + V +  +   +     V+F       +      +            GI 
Sbjct: 181 IKVGLIPAVVDRVVVGDITRTRLSHIKVLFFAGVNDGIVPSASGR-----------GGIL 229

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
               +   ++  V       ++   +     LY+ MT+ SD+L +   +++S+ K     
Sbjct: 230 TEAERRSLKSRQVELAPTAREEGFLQ--RLYLYLVMTKPSDRLYLSYAASSSDGKSLRPS 287

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSI---------------------NKDEWIAYEWSTHH 718
                V   F     ++  +   +                          ++        
Sbjct: 288 GLIGQVLKMFPEKRVMRADEKQMAAWSLPLGKRRVIEGLKDYGSSRQDSRFMELFGFFLR 347

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--------- 769
            E    E  + ++      +      +  K   +     + + ++               
Sbjct: 348 SELYRDELRQLVEASFYTYEDRGIGRTAAKEIYSATLHGSVTRMEQYASCAYAHFLAYGL 407

Query: 770 --LESLLSDNQTFNRGLIIH----KLLQVIFT-------LPEHKRKNFITSYCTKNAKLW 816
              E  + +    + G + H       + +         + E  RK  ++   +   K +
Sbjct: 408 ELSERPVYELAATDIGNLFHGSIDLYFKRMKEENRSFREISEEDRKKLVSECVSDVTKDY 467

Query: 817 -----PAKEYKNLLLSITRLLENPMMTTA---MSCDSYSEVSVSGKINCPK--------- 859
                 +      L    R + +  +      +    +         +            
Sbjct: 468 GNTIMSSSARNQYLERKVRRITDRTVWALTEQLKKGDFEPAGFEVTFSPADNLKAMKIPV 527

Query: 860 ---KDIIISGRIDQ--ISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKI 910
              + I + GRID+  +      ++  I +YKT       +E     +  QL +  Y   
Sbjct: 528 SKEEAIHLKGRIDRIDLCEDGDLLYLKIIDYKTGKTKFDLMEAY---YGLQLQLVVYMDA 584

Query: 911 L----KDSYPNKSLV-CLLIY 926
                +  +P+K +V   + Y
Sbjct: 585 ALEKEQRKHPDKKVVPAGIFY 605


>gi|167902088|ref|ZP_02489293.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           NCTC 13177]
          Length = 256

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 51/195 (26%), Gaps = 40/195 (20%)

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA 818
           P+      +   + +L+  +    G  +H+LL++                  +       
Sbjct: 1   PAPAAAPRELAEDDILAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAEL 60

Query: 819 KEYKNLLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII------ 863
              + L   +TRL+ +           +         +E+           + +      
Sbjct: 61  ALAERLPAMMTRLVADLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAA 120

Query: 864 ----------------ISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPY 898
                           + G ID I       +I ++K++H             +     +
Sbjct: 121 HGYPDVALEAGTLAGFVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHH 180

Query: 899 THIAQLSIYEKILKD 913
            +  Q  +Y   L  
Sbjct: 181 AYHLQALLYMVALHR 195


>gi|171912576|ref|ZP_02928046.1| hypothetical protein VspiD_15390 [Verrucomicrobium spinosum DSM
           4136]
          Length = 955

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 91/341 (26%), Gaps = 51/341 (14%)

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE 713
              RA D   +   +   +  ++          +          +  ++           
Sbjct: 558 ATRRARDAYFLKAMAEQRSGSRTLHIVLGRHTAEGDALRPSRLLLDASDDDLPLRVKHLF 617

Query: 714 WSTHHPENTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEPYILNPSTIDTKGKTNLES 772
            +    +  P        QL    +   +   SP                D  G  ++ +
Sbjct: 618 PAEDEVQAPPRPLRTQAFQLTPPLRKWTRSAISPTALRRYLQCPFRFYLTDVLGMESVST 677

Query: 773 LLSDNQTFNRGLIIHKLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAK---------- 819
            L +      G +IH++ +       + E +    I ++         A           
Sbjct: 678 GLRELSPATVGDLIHQVFKAFADETAVAESRDAGIIAAWLEAELDRRAALYFGAEPLFSV 737

Query: 820 --EYKNLLLSITRLLE-NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQ 876
             + ++L   +    E    +         +E  +          +I+SG+ID+I  + +
Sbjct: 738 TLQVESLRQRLAAFAEKQAELREQGWRILRAEEKIQADWGVDLGGVILSGKIDRIDRNDK 797

Query: 877 N--IFIFEYKTHHHVPQEIEHIPYTHI------------------------AQLSIYEKI 910
              + + +YKT    P+E  H                               QL +Y + 
Sbjct: 798 TGMLRVIDYKTSRKKPEEAHHRSARKELLADENQSWKCFDDARGKARCWTDLQLPLYARA 857

Query: 911 L-KDSYPNKSLVCLLIY----VSEPKVFI---IPQNKLNKA 943
           +         +          VSE K  +   +  + ++ A
Sbjct: 858 VSAKLADGAPVEAAYFLLPATVSEVKTHVWEGLDADLMDAA 898


>gi|158340761|ref|YP_001521929.1| hypothetical protein AM1_D0120 [Acaryochloris marina MBIC11017]
 gi|158311002|gb|ABW32615.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 23/184 (12%)

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF-----TLPEHKRKNFITSYCTKNA 813
           P   + + +  L S  +       G+ +HK L  I+       P      F   +     
Sbjct: 17  PKAYNFRYERGLSSPSAFGSPA-FGIALHKTLADIYKDWNYDYPLPSLDWFAMCWQHHTG 75

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK----DIIISGRID 869
           +L PA+ ++       +L     +           + V GKI    +    +  I+GR D
Sbjct: 76  ELKPAQIHEGW--MALQLYYEKYVAPL--PQIRKPIGVEGKIKASFQVNNIEFSITGRYD 131

Query: 870 QISISQQNIFIFEYKTHHH--VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           ++  +   + + +YKT         I+        QL +Y  IL+  YP       LIY+
Sbjct: 132 RLDYTDNGLELIDYKTSKTIGPSDGID-------LQLGLYFLILEQIYPEALDTLSLIYL 184

Query: 928 SEPK 931
            + +
Sbjct: 185 RQGQ 188


>gi|227540658|ref|ZP_03970707.1| hypothetical protein HMPREF0765_4902 [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227239482|gb|EEI89497.1| hypothetical protein HMPREF0765_4902 [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 359

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 58/189 (30%), Gaps = 31/189 (16%)

Query: 752 NEPYILNPSTIDTKGKTNLESLLSD----------NQTFNRGLIIHKLLQVIFTL---PE 798
            E   ++PS   +      +SLL++          +     G I+HK+L++I       E
Sbjct: 11  KEIKRISPSQFYSMKNCAYKSLLAEAFDKKPLLPLSPNAYFGTILHKILELITKGIVKNE 70

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS-------- 850
                                 +   +  + + L N  +                     
Sbjct: 71  DDFNTEFDKQLKIVEDDLQENGFGFFVP-LQKKLRNFGLKKIQLKKHLRNKPKQQTNLGV 129

Query: 851 --VSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE-------HIPYTHI 901
                +     +D +I G++D I  +  NI I ++KT       ++        +   + 
Sbjct: 130 VNFYSERWFESEDKLIGGKVDLIIENNDNIEIIDFKTGAITQDCLDDEGELYSDVKEEYK 189

Query: 902 AQLSIYEKI 910
            QL IY  +
Sbjct: 190 EQLKIYAYL 198


>gi|289763380|ref|ZP_06522758.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis GM
           1503]
 gi|289710886|gb|EFD74902.1| ATP-dependent DNA helicase II uvrD2 [Mycobacterium tuberculosis GM
           1503]
          Length = 296

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 68/229 (29%), Gaps = 20/229 (8%)

Query: 8   SLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS 67
           +  E    +            S +    +L+              L+        +  + 
Sbjct: 68  AAGEMRSRL--RALDAAARTGSGVGAVQALTFHAAAYR------QLRYFWSRVIADTGWQ 119

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL S F        +  +    +    DL  +++ ++   I   +        +      
Sbjct: 120 LLDSKFAVVARAASRTRLHASTDD-VRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLD 178

Query: 128 TL-AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
                 + + YE  K +   +   D            +  A +  +        ++DE Q
Sbjct: 179 AAQIAAVYSEYEALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQ 238

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           D + +Q  V+ +   D             L  VGD  Q+IYSF GA P+
Sbjct: 239 DVTPLQQRVLSAWLGD----------RDDLTVVGDANQTIYSFTGASPR 277


>gi|157164411|ref|YP_001466191.1| hypothetical protein CCC13826_0735 [Campylobacter concisus 13826]
 gi|112801476|gb|EAT98820.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 781

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/551 (12%), Positives = 153/551 (27%), Gaps = 87/551 (15%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL-SQEDDLSFVCMLKSP 444
               +   R       I+V+  D    ++ L + D   +  + +     +  F   L   
Sbjct: 255 MAKASEFVREGIKAENIAVILPD-EGFSEILRLHDSAKIFNYAMGESFKNTKFYEALYYI 313

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
               +E+        R E+     +I          F+       E+   ++F    D  
Sbjct: 314 TRAINEEASPVFDQSRCESYEELGFILSEFGVSEQLFEKFRASYFEVCEFSKFKELIDEL 373

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
            ++    +  ++         ++ L  + +F          SL++L SE+     +    
Sbjct: 374 LVLENEPRCEEKLALEL--FRMENLCRYFSF----------SLKQL-SEIFLLNISRLSI 420

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 ++ +M +  ++G++   V +VD        +   +M +   +    G+  ++ +
Sbjct: 421 DDVGGGKISVMGMLESRGMKFDGVIIVDFNDNFIPARSANEMFLNSKVRQKAGLISYVER 480

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
              +      LI + KK                     +            S     +  
Sbjct: 481 ENLQRFYYESLINNAKK---------------------VAISCCVNEESIPSRFLKNFKT 519

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
           + D   +DE   K+ L              S +  ++  +   +     +    +   L 
Sbjct: 520 IKDEKFSDEAYLKLFLKGEA----------SLNLSDDEIILEHDFFANPLSFSTLNLFLT 569

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH-KLLQVIF----TLPEH 799
            P K    +   +           +    ++      +G  +H  L +            
Sbjct: 570 CPRKYYYTKIAHI-----------DAPKAIASELGTKQGNSVHGALFEYYTSEFYKQNNT 618

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITR--LLENPMMTTAMSCDSYSEVSVSGKINC 857
                      K        E++          + EN  +           +    ++  
Sbjct: 619 FDLAVFKEMLAKQ--NLTPLEFEIWTHKFKEYEIYENERLRAGF-----RVLECEKEVQS 671

Query: 858 PKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
               + I G ID+I +     + I +YKT        E    +   QL+ Y    +  Y 
Sbjct: 672 EFCGVQIKGFIDRIDVGANGDVLILDYKTG-------EANVNS--LQLAFY----EALYG 718

Query: 917 NKSLVCLLIYV 927
            K +     Y 
Sbjct: 719 GK-VRSA-YYT 727


>gi|224538975|ref|ZP_03679514.1| hypothetical protein BACCELL_03872 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224519421|gb|EEF88526.1| hypothetical protein BACCELL_03872 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1624

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD    +  ++++L         T++    + AVGD+ Q+IY F G++   + R
Sbjct: 1197 LVIDEAQDMGTEEHSLVKALI--------TNNEEMRVIAVGDDDQNIYEFRGSDSGYMYR 1248

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
                            + +E+  ++RS    +   ++        
Sbjct: 1249 L---------AQESGSTFVEMTENYRSARQPVDFANEFLKTINKR 1284


>gi|83950793|ref|ZP_00959526.1| hypothetical protein ISM_06825 [Roseovarius nubinhibens ISM]
 gi|83838692|gb|EAP77988.1| hypothetical protein ISM_06825 [Roseovarius nubinhibens ISM]
          Length = 985

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/401 (11%), Positives = 116/401 (28%), Gaps = 41/401 (10%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-VRIM 575
            ++  G + + VLDE     L       +S  +  + L+    + +   +   +  +RI 
Sbjct: 512 LLTPAGPQSLAVLDEL---ALHGPHGGPASAVDFGNLLQNLLSSGEVRSAERADPLIRIW 568

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+   + ++ L       +         +  +L    G+ +   +     +     
Sbjct: 569 GTIEARVQGAELIILAGLNEGSWPETPGHDPWLNRALRKQAGLLLPERRIGLAAHDFQQA 628

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
               +            + +TRA            ++E ++    W + + +        
Sbjct: 629 ALGPE------------IWITRAVR----------NDEAETVVSRWLNRLQNLLSGLPDQ 666

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-SPIKNDINEP 754
             +   + +        +        TP   E            P +L  + IK  I +P
Sbjct: 667 GGVAALDGMRARGKAWLDRVDQLEAVTPTAPEPRPAPCPPRAARPSRLSVTAIKRLIRDP 726

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
           Y +    +   G + L  +        RG  +H +L+   T           +   + A 
Sbjct: 727 YAIYARHV--LGLSALNPVQRVPDALMRGNALHDVLERFITETRDDDSGVTVARLMRIAD 784

Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK--------DIIISG 866
              A +       +        +      D  +  +V+                   ++ 
Sbjct: 785 EELAAQVPWAQTRMQWRARLERVADGFVADELARRTVARPAALEIATRGTLPALGFTLTA 844

Query: 867 RIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           + D++ ++    + I++YKT      + +        QL +
Sbjct: 845 KADRLDVTPDGKVMIYDYKTGTPPSAKEQEFFDR---QLLL 882


>gi|330959490|gb|EGH59750.1| UvrD/Rep family helicase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 804

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/461 (13%), Positives = 120/461 (26%), Gaps = 69/461 (14%)

Query: 27  QVSDINKYVSLSMETGNPTILKK----------AQTLQQASQTQCIEERFSLLSSFFLTQ 76
           +   + +  S SME      +K+             L        + ER   L+    + 
Sbjct: 362 EGPSLRRDPSASMELYKEVAIKRTLFQAYFPEGVVHLDSYQDAAELSERLKHLAQAAPSF 421

Query: 77  KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN-A 135
            +  +       +          L     E   +  R N       + A    A  +   
Sbjct: 422 SYALKGEETPTPVLDSFNATSALLDSLGLEVGSVPGRMNFLPA--DSDALYFEALAIYWE 479

Query: 136 HYEEAKK--KNCVLDFEDLIINTNDLLK-----KRDVSAWIRYKIDQEINHILIDEVQDT 188
             E         V+ F         L       K     ++  K  ++  H+LID  +D 
Sbjct: 480 ALERHLLNLSRPVIPFG-------RLFASLGGGKIPAVRYVPLKTLEQCRHLLIDGAEDQ 532

Query: 189 SLIQWEVIRSLTEDFFVGKN----THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
           +L     +R++  +     +    T     +L   GD  Q +Y   GA PK +   + + 
Sbjct: 533 TLPVAAWVRAVLSEIRRRDSIQASTRGLSSSLTVAGDPNQWVYGSFGATPKLITDFEDLF 592

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                      + + L  SFRS   I+     +         LS       +   +  G+
Sbjct: 593 SS-----PVPATKVTLTESFRSPQTIIDAGYNLVQN------LSLGVNRGPKSIFTPKGE 641

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              V++      Q  S C             +      + +   +   I +   +     
Sbjct: 642 HQIVRIVGDDQEQLQSICQSAAADGYKILILIDSVVDKAWVDSAVGGRIRDDRASGV--- 698

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
               R I+ +                   +    +  I V+  D            L  L
Sbjct: 699 ----RSIRVRSFH----------------KAKSLEADIVVMIGDPSAGVSSWYRNQLFKL 738

Query: 425 GRF----ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
             F      +  D +     L+      +   +  I     
Sbjct: 739 AGFSSGGDSAPGDTVYHGEALRLAHVGITRARLACIWFPNR 779


>gi|319793173|ref|YP_004154813.1| exonuclease-like protein [Variovorax paradoxus EPS]
 gi|315595636|gb|ADU36702.1| exonuclease-like protein [Variovorax paradoxus EPS]
          Length = 851

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/563 (10%), Positives = 134/563 (23%), Gaps = 70/563 (12%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +T           I       + L+   A   LM+  R           +  LKS   
Sbjct: 267 RALTRRISAQLKAQGIVTHDETGWKLSTTRAAATLMSALRACAHDAASDQVLEWLKSGAD 326

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGIS----KFQHVIKYIHELIHIAQFCSPHD 502
             +          R E    +                      + I           P  
Sbjct: 327 GDALAVQALEVRLRREGLRDWSAWCSLVARSEKPNDVALLPYTEAIEARRASMMKSRPVA 386

Query: 503 ----FFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                   +L                       LD   +           +L E  + + 
Sbjct: 387 EWLRALRELLEGSGQWTPLADDMAGGKVIAALWLDADSHGDADEFPGGRHTLAEFTAWVR 446

Query: 556 --QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                 +           V ++ ++   G     V +     +          +   +  
Sbjct: 447 DVLEDASFVPPTGDQAPRVIVLPLYQLLGRAFGAVVIPGCDDRRLPASPEPPGNWSAAQR 506

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            + G+P                                      + + L       ++  
Sbjct: 507 LELGLP--------------------------------------SRETLE--AAQRSAWA 526

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
              +      +   S  + E V+   L  ++  D  +          +  ++        
Sbjct: 527 AALHNPWCELVWRQSDASGEPVRPSPLVQALQLDHVLQPTVDPRPARDVTVQPTAVPTPS 586

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
                +     S  ++    PY      +   G  + + L  +    + G  +H +L   
Sbjct: 587 GALLPLQNISTSVYEDLRRCPYRFF--ALRQLGLRSADELDVEVDKRDFGNWLHAVLGHF 644

Query: 794 -------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS 845
                   T   H+R  FI     +  + +   + + L   +    + +  +      + 
Sbjct: 645 HEALIETPTQDAHERVAFIEEAAQRATREYGLSDAEFLPFAAAWPAVRDGYLVWLAGHEV 704

Query: 846 YSEVSVSGK--INCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
              V V  +     P   + + GR+D++  +     F+ +YKT      +      T   
Sbjct: 705 GGAVFVESEPWKEQPLGGLRLVGRLDRVDRTSDGQAFVIDYKTESASVTKERVKDPTEDT 764

Query: 903 QLSIYEKILKDSYPNKSLVCLLI 925
           QL+ Y  ++     + +L    +
Sbjct: 765 QLAFYAALVA----DDTLRAAYV 783


>gi|270297068|ref|ZP_06203267.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273055|gb|EFA18918.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 963

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/491 (13%), Positives = 137/491 (27%), Gaps = 83/491 (16%)

Query: 468 EYIQKFANCGISKFQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
           +   +      +    +  Y+ EL   +A           I      R+     +     
Sbjct: 426 DAFLEQVFTPQNGIAALCSYLTELLREVAVLYRQEKDVEDIFNQL-YRESLFKSYTL--- 481

Query: 527 DVLDEFLNFTLRNEQNS--YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             ++  L+     E +     +L+ L++ L                 +++M V   + L+
Sbjct: 482 --VNRLLSLIETGELSGVRTDTLKRLLNRLLTSANIPFH--GEPAIGMQVMGVLETRNLD 537

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              + ++                I  +L    G+     ++              +   +
Sbjct: 538 FRNLIMLSLNEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQR 591

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            E   LLY                N S++  +       M+     +   +    L    
Sbjct: 592 AENVTLLY----------------NISSDGLNRGEMSRFMLQFLVESPHNISLEYLEAGQ 635

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
           +  + +  E           E  + +    D  + PK  FSP   +      L       
Sbjct: 636 SPQQALEIEIHKTP------EMLQQMFDAYDIHRRPKAFFSPSALNAYLDCRLKFYYRYV 689

Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKL----- 815
            G   L+ + ++  +   G I H+  ++    + T     RK  +      + +L     
Sbjct: 690 AGLKALDEVSAEIDSALFGTIFHRSAELVYNELTTNGREIRKEDLEQLLKDDVRLQAYVD 749

Query: 816 -----------------------WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS 852
                                    +K   + L  + R   +             +V   
Sbjct: 750 NAFKEKFFHVPLTEQPEYNGTQLIHSKVIASYLRQLLR--NDLQYAPFRMEGMEQDVREM 807

Query: 853 GKINCPKKDIIIS--GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIA 902
            +I+ P+  + +   G ID++      + I +YKT      P+ IE +         +I 
Sbjct: 808 MEIDTPQGKLALQIGGTIDRLDSKGDTLRIVDYKTGGTPKTPENIEQLFTPADNRPNYIF 867

Query: 903 QLSIYEKILKD 913
           Q  +Y  IL  
Sbjct: 868 QTFLYAAILCR 878


>gi|315647372|ref|ZP_07900485.1| hypothetical protein PVOR_18694 [Paenibacillus vortex V453]
 gi|315277574|gb|EFU40903.1| hypothetical protein PVOR_18694 [Paenibacillus vortex V453]
          Length = 543

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 19/111 (17%)

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           R  +     ++ IDE QD+   Q +V   L +   +            AVGD  QSI+ F
Sbjct: 172 RKYLKARYKYVFIDEYQDSGSDQHDVFIKLKDLGIIS----------VAVGDTNQSIFGF 221

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
                + ++R               F +  L  + R    I+    K+ S 
Sbjct: 222 SKKSSEFLVRL---------AQNADFKLFHLTKNRRCHPSIINYASKLISK 263


>gi|323943785|gb|EGB39880.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Escherichia coli
           H120]
          Length = 228

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
           + +   Y+EA  +  ++DF +L++  ++L   +     I     +   +IL+DE QDT+
Sbjct: 171 QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTN 226


>gi|291538109|emb|CBL11220.1| ATP-dependent nuclease subunit B [Roseburia intestinalis XB6B4]
          Length = 1179

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/553 (9%), Positives = 143/553 (25%), Gaps = 70/553 (12%)

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
               +   F   +  +  +       E VYE  +        K   V    +EL  + +  
Sbjct: 470  RWSRPWTFVMPDGTLEDMARLNEIREAVYENFKPLLEAFRGKDNTVSTQTYELYSLIRRL 529

Query: 499  SPHDFFTL---ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
            +             A   + +  ++  +++  ++ + L+       +   +++E    L+
Sbjct: 530  NMEQLLKERGNFFEAHGNQAR--AKEYDQIYKIVMDLLDKVTSLLGDETMTIREYSDILD 587

Query: 556  QY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH-KHIKKMHIMPSLN 613
                          ++ V +  +   +     ++F V     V     +   +       
Sbjct: 588  AGFEAAKVGIIPPGNDTVTVGDIERTRLNHVKILFFVGVNDGVVPKAGNQGGIISQFERE 647

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY---VGMTRASDQLIICKHSNT 670
                  + +         +     +L  +   E   + +       +A  +  +      
Sbjct: 648  KMAEYHLELAPGAREKVFIQKFYLYLNMTKPSERLYVTFCRVNSDGKALRRSYLIGTLLK 707

Query: 671  SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN----SINKDEWIAYEWSTHHPENTPLER 726
               + + +    +   +     E      +        +++ W A        E    + 
Sbjct: 708  LFPQLAVEEPSEEETLEGALTAESALPFLMEGLTKPVEDEEAWTALLAWYLSDEGEREKV 767

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLS 775
             +         K      +  K         + + ++                  E  L 
Sbjct: 768  MQLFDAAFGAHKDDAISKAVTKALYGNTLENSVTRLEQFAACAFAHYLSYGLRLKERELQ 827

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-ITRLLEN 834
               + + G I H +L+      E     +          L        +  S I  + E+
Sbjct: 828  QFASVDMGNIYHDVLERFAKGIELSDYTWFDIPEKAQEALLSQSMEDAIAGSGIGDVFED 887

Query: 835  PMMTTAMSC--------------DSYS--------EVSVSG--KINC------PKKDIII 864
               +  +                            EVS S   +++         + + +
Sbjct: 888  ARNSYLLKRMEATAKRTIWALMLQVRKGKFVPSGFEVSFSRAERLDAVQFQLGEDEKMRL 947

Query: 865  SGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKILKDS---- 914
             GRID++    +   ++  I +YK+          + + +  QL +  Y     +     
Sbjct: 948  RGRIDRVDTYETDDKVYVKIIDYKSG---NTTFSLLNFYYGLQLQLVVYMNAALELTKKK 1004

Query: 915  YPNKSLV-CLLIY 926
            Y  K      + Y
Sbjct: 1005 YKGKDTEPAGIFY 1017


>gi|323341190|ref|ZP_08081437.1| exonuclease RexB [Lactobacillus ruminis ATCC 25644]
 gi|323091384|gb|EFZ34009.1| exonuclease RexB [Lactobacillus ruminis ATCC 25644]
          Length = 1170

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 89/692 (12%), Positives = 179/692 (25%), Gaps = 144/692 (20%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            +   R  A  I  M+              + KD L+L R      L   +   +    K
Sbjct: 329 RTEEIRFAAAKIRQMVA---------VEGYRYKDFLILTR---HLDLYKNVLEPIFAKAK 376

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS------------PLFNFS 449
           + +  + +  ++DH  ++ L AL             + +LK+                  
Sbjct: 377 VPIFVDLQKKVSDHPLVELLNALFAVKRRHYRYNDMMRLLKTELLIPKDLKVETYRRMLD 436

Query: 450 EDDIFKIC------TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
           + +   +           E + +Y    +      +  +  I     +I          F
Sbjct: 437 QTENLILKFGYEGSAWLKEKDWIYYRFGESDFGTRTDAEDRITKEVNVIRRYVKEILPPF 496

Query: 504 FTLILGAKKGRQQFI-----------SRFGNEVIDVLDE----------------FLNFT 536
           F  I  A+ GR+  +            +   +    L E                F    
Sbjct: 497 FKQIDEAENGRKAAVCLVNFLVDNGVKKRLEDWRQNLMEQGLLQESERPEQVWNLFCQMM 556

Query: 537 LRNEQNSYSSLQELISELEQY----PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
               +N      E    L            R   A+ +EV I      +  +  VVF++ 
Sbjct: 557 DEFVENLGDLPFEEEDFLNLLQTGFDAGEYRRVPASLDEVSISETGMVQPTDRKVVFMIG 616

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
           +   V   +   K  +     D     +      S N     ++    + +      L Y
Sbjct: 617 STDLVMPDRIQNKSLLS----DGDRSLMLENALLSEN----QVLDETSEKSMLSEPFLNY 668

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----RVKKIKLTNSINKDE 708
           +     +++LI         +       + + +   F  +E       K+       +D 
Sbjct: 669 LAFLSPTEKLIFTYPHGNDADGGIKMSPYVERIKQHFLLEELEISEFDKLSTPKGTIEDL 728

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL----------- 757
                       + P   ++   ++        +         N P  L           
Sbjct: 729 ICEIRRHADEKNSVPAFWKQVYAKMKTVDAEMTEKVMSSLRYRNIPEQLTAQNARKLYGK 788

Query: 758 ----NPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIFTLP----- 797
               + S ++T  K             +E  + +    + G   H +L   F L      
Sbjct: 789 ELNTSISKLETFYKNPYEYFLRYGLGLMERDVFEMSAASTGSYFHAVLDAFFRLLFKNNL 848

Query: 798 --EHKRKNFITSYCTKNAKLWPAKEYKNLLLS------ITRLLENPMMTTAMS------- 842
             ++           +   L        +L S      I RLL + +  T  +       
Sbjct: 849 TLKNLSSEQFNEIFEETTSLVSKDPQFMILKSSNRMGFIERLLNDTLSQTLWAVRNQRNY 908

Query: 843 ---CDSYSE-----VSVSGKINC------PKKDIIISGRIDQISIS---QQNIF-IFEYK 884
                  +E     V V   +            + + G+ID+I  +         + +YK
Sbjct: 909 GHVRTLRTEALFGHVGVEEGLKGLLIKTPKGNQVNVRGKIDRIDETIGAGDKYLGVIDYK 968

Query: 885 THHHVPQEIEHIPYTH---IAQLSIYEKILKD 913
           +              +     QL  Y   L+ 
Sbjct: 969 SGARKFN----YAQAYYGIALQLLTYLDALEQ 996


>gi|187921120|ref|YP_001890152.1| hypothetical protein Bphyt_6475 [Burkholderia phytofirmans PsJN]
 gi|187719558|gb|ACD20781.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 628

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 89/607 (14%), Positives = 169/607 (27%), Gaps = 111/607 (18%)

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
           LL   F         + I ++I +K+     +  ++      IR+     ++  +     
Sbjct: 98  LLVRSFQADIKLWVVDRIREKIAEKAEHRDRRGTRAGTRERLIREIAELEEVRTTVARVE 157

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                  + Y E      VL  +D++     L+ +R +   I   I      I +DE QD
Sbjct: 158 RFTYGTGSDYAE-----GVLGHDDILKLGPALIVERPLLRQI---IAGRFPFIFVDESQD 209

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
           T+ +    +R +                +   GD  Q IY+  GA P             
Sbjct: 210 TNPVVVSALRCVA--------ADQPQLCVGFFGDPMQKIYTT-GAGP------------- 247

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                +++  I  P +FR    +L VV+ + +  +   GL +     +          G+
Sbjct: 248 -IAREREWREITKPENFRCPTSVLRVVNAIRATGD---GLEQTRGRALEVDGVLQPVTGS 303

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            Q++      + +        W     + P  SS +  A                     
Sbjct: 304 AQMFVLPADGNRTAGLQAVRLWLRNSTADPLWSSDNAEADV------------------- 344

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL--- 424
                   +LVLV +   + L         +D        D         ++ L+     
Sbjct: 345 -------RLLVLVHRMAASRLGFANIYAALHD-GAPASLKDGLDDGSAWPLRPLLQFVLP 396

Query: 425 GRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
               +   D    + +L+S       D I                 Q+     + + Q  
Sbjct: 397 LVIAVRSGDQFKVMSLLRSACPQLETDRIQ----------------QQEIQGVLRQLQEG 440

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGR--QQFISRFGNEVIDVLDEFLNFTLRNEQN 542
           +  +  L+      S  D   LI   +  R  ++F +    + +D         +     
Sbjct: 441 VDALAGLLEDGAHASILDVLRLIRDREMLRLDERFNTYLMPDPLDNGSSEFQHIVGFLAC 500

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
               L      +E+  P   +                 KG +   V +V    +   H H
Sbjct: 501 HAIELWGYRKYIEEESPFATQQ--------------GVKGAQFERVLVV-LDDEEGPHSH 545

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                    +                     + I    +S  +   RL YV  +RA   L
Sbjct: 546 FSYGKYFGFVPLSEND--------------EEKIASGAESVLDRTRRLFYVCCSRAVKDL 591

Query: 663 IICKHSN 669
            +     
Sbjct: 592 AVVMFVP 598


>gi|317483860|ref|ZP_07942799.1| hypothetical protein HMPREF0179_00148 [Bilophila wadsworthia 3_1_6]
 gi|316924877|gb|EFV46024.1| hypothetical protein HMPREF0179_00148 [Bilophila wadsworthia 3_1_6]
          Length = 267

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 61/192 (31%), Gaps = 23/192 (11%)

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVIFT------- 795
           I EP ++  S++    +        + +            G  +H    +  T       
Sbjct: 3   IKEPILIRASSLAGLFECPARWEAQNIRGLRTPSSGSARLGTAVHTSTALFDTSRMNGTG 62

Query: 796 -LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
             P+      + +    + ++            I   L     +T     +Y+  ++   
Sbjct: 63  ITPDEAAGAAVDAIHKPDEEVVWDDLQPTEAERIALSLHRLYCSTIAPRQTYA--AIEAT 120

Query: 855 ---INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP-YTHIAQLSIYEKI 910
              ++     I ++G +D++  ++    I + KT               H AQL++Y ++
Sbjct: 121 CERLDIADLGIALTGTVDRVRRTEDGYGIADIKTGKSAVGADGTCKTQGHAAQLAVY-EL 179

Query: 911 LKDSYPNKSLVC 922
           L +   +  +  
Sbjct: 180 LAEHSTDICIEA 191


>gi|288920291|ref|ZP_06414604.1| Superfamily I DNA and RNA helicase-like protein [Frankia sp. EUN1f]
 gi|288348315|gb|EFC82579.1| Superfamily I DNA and RNA helicase-like protein [Frankia sp. EUN1f]
          Length = 581

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/406 (11%), Positives = 102/406 (25%), Gaps = 57/406 (14%)

Query: 14  ELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFF 73
           + I +     P  +   +   +          + ++ Q   Q  +            + +
Sbjct: 36  QSIVERFIRRPGLEGDRLGVALISFTNAAITAVHERCQDYPQLLRAPNFVGTIDGFINRY 95

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKL--------KKSQDEFIKIRDRFNTYKMFKSTLA 125
           +       +                ++         + +  +           + +    
Sbjct: 96  IVGPIYTARRGHPPSFRDTWETTPGRVYTSTVKAGLRLRLAWFSFAADGEATLVRRRIPG 155

Query: 126 SLT-----LAKYLN------AHYE-EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
            L        K +       A Y+  +  +   +D          L+    V   +  ++
Sbjct: 156 ELRPQTMSAVKDVMDGITAEARYKWRSLTRAGFVD----CEYARHLMTGYLVDPVLAGRL 211

Query: 174 DQEINH----ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
            +   H    ++IDE QD++     +IR L           +S  ++  VGD  Q IY F
Sbjct: 212 QRRFAHRFGEVIIDEFQDSNDGDVALIRFL----------EASGISVVMVGDVDQEIYGF 261

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
               P        + +              L  ++RST  I  VVD +            
Sbjct: 262 RQTAPGETGALAGLVEAGEP----------LDGNYRSTPAICKVVDSLRYGDSADTPCGP 311

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                      +I            ++  +     Q    +       + + A       
Sbjct: 312 YKDEPRPVYVLKITGPAGAAKKITALAAREGFAAEQIVVLSHGGSDARRYAGAGKPLGSA 371

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             TI  +     I  +G  +            + +   L   + R 
Sbjct: 372 TTTIERLAQATAIIRDGNGKP---------QDRARAMALFESILRE 408


>gi|224550145|gb|ACN54157.1| helicase [Wolbachia endosymbiont of Nasonia longicornis]
 gi|224550147|gb|ACN54158.1| helicase [Wolbachia endosymbiont of Nasonia giraulti]
          Length = 115

 Score = 67.3 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
           G+ +   +L  SFRST ++L +VD++F+     +     +   I+H   R    G +++W
Sbjct: 7   GRDWVSCQLEKSFRSTPEVLMLVDRIFNN---FREEISFNDNKIKHIPYRENDQGYIEIW 63

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             +    + +    Q   T   D + ++    +LA+ IA  I N +    I    
Sbjct: 64  PLLPGYEEEEQQALQIHLTQRKDYVVKD---RLLAQAIAQRIHNWLNEGRILVAK 115


>gi|218263837|ref|ZP_03477813.1| hypothetical protein PRABACTJOHN_03503 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222510|gb|EEC95160.1| hypothetical protein PRABACTJOHN_03503 [Parabacteroides johnsonii
           DSM 18315]
          Length = 610

 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/531 (13%), Positives = 156/531 (29%), Gaps = 104/531 (19%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +   L   ++I     ++ +  +   I   I Q+   +LIDE QDT     +    L  +
Sbjct: 163 EYNALSHAEVIKIGAKMIVENKLLQKI---IAQQYPFLLIDESQDTKKELVQAFFELERN 219

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
           F           TL  +GD+KQ IY+                ++  T   +++     P+
Sbjct: 220 FG------GENFTLGFIGDQKQRIYTDGE-------------ERITTIIPKEWETPVKPM 260

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++R    I+ + +K+    E                     + G V L+    +   ++ 
Sbjct: 261 NYRCDKRIIKLSNKISESIE----------QNATQNPRENAEEGFVHLYLIRNNDEMNKF 310

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             +                       +  ++  + G D     G    I   + ++  R+
Sbjct: 311 EKE---------------------ANVVLSMKELTGDDKWSMEGNNVKILTLEHMMAARR 349

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                              I    +          + D+    +             ++ 
Sbjct: 350 ----LGFEDFF-------GIMRHVDKYSQTLLQGKVDDMDIFSKL---------SFPLID 389

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           S       D++  +   +  +  +       A   +SK Q ++  + ++       +  +
Sbjct: 390 SLKKG---DNLNALNLLKSYSPLLMNLPSDKAYETLSKCQEILDGLQKM--DLGRVTIKE 444

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
           F   I          ++   N    ++D         E+ +   L    S +      I 
Sbjct: 445 FLKNI---------VVTNLFNVPQLLIDALSVSLESLEEQNDEVLYAWCSVMNLPVIQIV 495

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVV-FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           + ++  +      T    KGLE   V  ++D         +  K+  +  L+        
Sbjct: 496 KFNNYINGNSMFGTHQGVKGLEFDRVLVIIDEKESNMPLFNYNKLFGVEPLSTTDINN-- 553

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                          K  K++T E   RL YV  TRA   L I  +++   
Sbjct: 554 --------------RKEGKETTIERTMRLFYVACTRARHSLAIAVYTDNPE 590


>gi|255036136|ref|YP_003086757.1| hypothetical protein Dfer_2374 [Dyadobacter fermentans DSM 18053]
 gi|254948892|gb|ACT93592.1| hypothetical protein Dfer_2374 [Dyadobacter fermentans DSM 18053]
          Length = 968

 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 66/598 (11%), Positives = 144/598 (24%), Gaps = 90/598 (15%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
           V    R      +      ++ + +            L       +              
Sbjct: 359 VELRSRSGKLIRIPKFGHKSVDKILNHPFIRHYEHVALTPLEDGQTIIQRTLREITEGNQ 418

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
             +              FQ +  +  +        S +    L+      R+ +      
Sbjct: 419 VFLSSEELVTLGDNHPLFQILFTHWQKNNAQQVIRSFYQLIELL------REVYKDYKNA 472

Query: 524 EVIDVLDEFLNFTLRNEQN-----SYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTV 577
              + L  F     + EQ         +L+ L S + E    T         + ++IM +
Sbjct: 473 LETEYLYLFYTLLKQFEQTIEERAELITLRTLKSFMFELIRQTRIPFSGEPVSNLQIMGM 532

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
              + L+   + ++     V      +   I        G+P    Q    +     L++
Sbjct: 533 LETRALDFERIIILSVNEGVIPQAKRQNSLIPFDAAQAVGLPTHQHQEAVMSYHFYRLLQ 592

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              +                    L    +      +KS      +           + +
Sbjct: 593 RASEVHI-----------------LYTSTNDAPGGGEKSRFVRQIEY---------ELAQ 626

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
                 I     +    +    E    + +  I  +           + +   I      
Sbjct: 627 YNPLIRIENKTVVFEAQARQELEEVVHKDDALIAAIRAYLDGKGIYPTHLNEFIRCSMQF 686

Query: 758 NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT----LPEHKRKNFITSYCTKNA 813
               I    +               G  +H  L+ +      L +   +  I     +  
Sbjct: 687 YLKHIAGVKEKEEVEEELGMD--KIGTWLHASLERLDLEFFLLDKDPSEEEIVQVLREEF 744

Query: 814 KLWPAKEYKNL----------LLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD-- 861
                    NL             I   L + M          +E  +  +I    +   
Sbjct: 745 DRLFKGYVTNLGLNRIYYQIGEQQILTFLRHHMAQKPRRQILAAEQPLHTRIQLVLQGAF 804

Query: 862 --IIISGRIDQISISQQNI-FIFEYKTHHH---------VPQEIEHIPYT-------HIA 902
             + + G+ID+I + +  I ++ +YKT             P   E +          ++ 
Sbjct: 805 TPVRLGGKIDRIELGEDGILYVMDYKTGSVELTGKQKLADPVAREEVIRADPDRKMGYVR 864

Query: 903 QLSIYEKIL-KDS--------------YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
           QL IYE ++ +                +   ++        +PK  I    +L    A
Sbjct: 865 QLWIYEYLMYRRMKEENGLKLRGNTYNFGEYAVKSGFYSFRDPKNLIANPLELTDQLA 922


>gi|119026324|ref|YP_910169.1| hypothetical protein BAD_1306 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765908|dbj|BAF40087.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 1065

 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/637 (10%), Positives = 148/637 (23%), Gaps = 171/637 (26%)

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE-LIHIAQFCSPHD 502
           P F  +   I  +             +    +     F  + K + + L   A+  S   
Sbjct: 282 PSFGMNALYILLLEGDTDRVLDAIASVLGRKDPQAQAFARLWKALDDTLRSEARLTSHEP 341

Query: 503 FF-----------TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
            +             I      R     R  N+ +D      ++    E N  ++   + 
Sbjct: 342 QYMLDCAWQAFGKAEIWQKTALRNNAEGRAANDRLDTAMRLFSYASGGESNGVTAAHTID 401

Query: 552 SELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           + +E               +     V + T   A G    +VF+       + +   +  
Sbjct: 402 AFIEQVRALAIEADSLAHTAPIDQAVTLTTPAGAAGKHWKLVFMPAFQQGQWPNLSPRNT 461

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                   D    +   +        +        +      + L V +TRA +++ +  
Sbjct: 462 LFGGEELAD---IMLHGRLSDDIVTSAGRENAQLAAVLASEQKSLLVALTRADERVTVSA 518

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI-----------KLTNSINKDEWIAYEWS 715
             N  +        +    +D   + +   ++            L          A    
Sbjct: 519 VLNEDHVPSDFLYGYLPEWFDRDRDADAETRVYTAVGEAGEYAGLEADPRGLVAAARSVL 578

Query: 716 THHPENTPLEREETIKQ--------LMDEQKIPKKLFSPIKNDI---------------- 751
            H P ++P  R+                       L      D                 
Sbjct: 579 AHAPADSPQARDAAQALALLASHGIAAANPDNWAFLTGHAGADDMTEIDGKMESDGKTEH 638

Query: 752 -------------------NEPYILNPSTIDTKGKTNLESLLS--------DNQTFNRGL 784
                              ++   L+PS +D+     +  +L          +   + G 
Sbjct: 639 ADKAKLIEQPESIEKTDGQSDVVTLSPSAVDSLWACPVCWMLENRFAGPRMGSAATSFGS 698

Query: 785 IIHKLLQVIFT-----------LPEHKRKNFITSYC---------TKNAKLWPAKEYKNL 824
           +IH + Q               + +    + IT +            NA   P + YK L
Sbjct: 699 LIHTVAQQATEAGLDLPQNHTAVSDEDNIDEITQWMIGRYKTLRGDLNAIDDPEERYKAL 758

Query: 825 LLSITRLLENPMMTTAM--------------------SCDSYSEVSVSGKINCPK----- 859
                  +    + T                         + +E   + + +        
Sbjct: 759 GKDAKASVALRNIATYFVKSNRTGYPSNNTENITVGTLDHAEAERQFAARFDFDDILDAY 818

Query: 860 ---------------------------------KDIIISGRIDQIS--ISQQN---IFIF 881
                                              + +SGRID++    +      + + 
Sbjct: 819 NAIDGNAPISRDELIAIMGALVGGWPETGMSDRLTVRLSGRIDRLEHRRTADGREQVRLI 878

Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
           +YKT                 QL  Y+  L   +P  
Sbjct: 879 DYKTGKVPNGRSLFSD----LQLVCYQLGLA--FPEH 909


>gi|302531109|ref|ZP_07283451.1| predicted protein [Streptomyces sp. AA4]
 gi|302440004|gb|EFL11820.1| predicted protein [Streptomyces sp. AA4]
          Length = 640

 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 103/343 (30%), Gaps = 50/343 (14%)

Query: 29  SDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQE 88
           +   + +    ET    +  +     Q          F       L   F    N+    
Sbjct: 256 TTFVRNLPPVSETAFRRLAPEMADRAQFVSLHSWASSFLASRDIHLNISFETSFNLAWGA 315

Query: 89  INKKSPD-LKEKLKKSQDE---------FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
                PD +                     + +      +  +           +   Y+
Sbjct: 316 HRGALPDDVPNYWADEVHRVIKGRGIKTLDEYQRVIRRGRRRRLDHRQRATVWQVYQDYQ 375

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           +   +    DF+DL+    + L++R         +++    +++DEVQD          +
Sbjct: 376 KNLAERNAHDFDDLLTRALEELEQRP--------LEEPYAAVVVDEVQD---------MT 418

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIY--SFHGAEPKRVLREKRINQKRATNAGQKFS 256
           LT    + +     P  L  VGD +Q +Y   +  ++    ++ +               
Sbjct: 419 LTGLRLLLRMAGDGPNQLLLVGDGQQQVYPGGWRLSDAGIPVQGRGE------------- 465

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
              L +++R+   IL    ++ ++ E      + +       ++ +   G  + W     
Sbjct: 466 --VLKVNYRNRTGILDFARRIAALNEV--DDLDGAAGVALRDAAAVNDGGIAKSW----E 517

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             +S+      +     D    ES+    + + A+    ++ +
Sbjct: 518 GTESELPEALTAAVRDLDVPHGESALIAFSNKDAFKCRKLLDS 560


>gi|167845098|ref|ZP_02470606.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei B7210]
          Length = 230

 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 45/179 (25%), Gaps = 40/179 (22%)

Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
           +  +    G  +H+LL++                  +          + L   +TRL+ +
Sbjct: 1   AFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVAD 60

Query: 835 P---------MMTTAMSCDSYSEVSVSGKINCPKKDII---------------------- 863
                      +         +E+           + +                      
Sbjct: 61  LAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGF 120

Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
           + G ID I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 121 VKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 179


>gi|15887383|ref|NP_353064.1| hypothetical protein Atu0024 [Agrobacterium tumefaciens str. C58]
 gi|15154886|gb|AAK85849.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 1061

 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/412 (9%), Positives = 82/412 (19%), Gaps = 50/412 (12%)

Query: 516 QFISRFGNEVIDVLDEFL-NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
              + +  E  D L           +       Q +            +  S  H  + I
Sbjct: 579 DLAALWSGEAGDKLSSLFAELMESGDILDADGPQWIDIFAALVAGESIKPRSMRHPRIFI 638

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
                A+      V +      ++  +      +  S+    G+                
Sbjct: 639 FGALEARLQSVDTVVIGGLNEGLWPGQTANNPFLSRSMKTAIGL---------EPPERRI 689

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                         ++ Y    R                + S        +         
Sbjct: 690 GQLAHDFEMANGTRQIFYTRALR----------------QGSTPAVASRWLQRLLALGGE 733

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               +L          A        + T           +  +         ++ D    
Sbjct: 734 NFAEQLRKRGETYRHWAGLMDESIDQETAKRPAPKPPADLQPKSYSFSEVGRLRRDPYAI 793

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ------VIFTLPEHKRKNFITSY 808
           Y              L+    D    +RG + H +++       I   P       +   
Sbjct: 794 YARR-----ILKLDPLDPFNRDPNAADRGTLYHGIIERYSREGHIPGTPASL--EAMQRI 846

Query: 809 C------TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
                                        ++           S+ E          +  I
Sbjct: 847 LDDCFDAENLPVHVDVIWRPRFAAVARAFIDWEKERHPSIRRSFFEAR--AGQEIAEAGI 904

Query: 863 IISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            ++G  D+I   +     I +YKT       +         QL++    L  
Sbjct: 905 RLTGVADRIDIKTSGQADIIDYKTGLAP--SVNQARALLDPQLALEAAALMR 954


>gi|298481371|ref|ZP_06999564.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|298272575|gb|EFI14143.1| conserved hypothetical protein [Bacteroides sp. D22]
          Length = 959

 Score = 66.9 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 81/704 (11%), Positives = 190/704 (26%), Gaps = 104/704 (14%)

Query: 269 DILTVV-DKVFSIPENA-QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
           ++L  V ++ F   ++A + L          +  R  + G           ++   +   
Sbjct: 216 NVLNKVENEFFRKLKDAGKALFYWDYDIFYTQQIRKHEAGEFLKRNLGEFPNELPESFFD 275

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                        S+ +  AR +   I  +    +  +  K++    ++ +VL  +    
Sbjct: 276 TFKEPKKIRYISASTENAQARFLPEWIKMITDNHSQIAEEKEK----ENAVVLCNEALLL 331

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL-------SFVC 439
           P++  + + +KN     V     F L        + A      +            +   
Sbjct: 332 PVLHSIPQEVKN-----VNITMGFPLAQTPVYSFINAAMELQTNGYRSDTGRFTYEAVSA 386

Query: 440 MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
           +LK P                     + +  + +      K    +  +    +  +   
Sbjct: 387 ILKHPY------TQQISSHAGPLERELTKTNRFYPLPSELKQDDFLTTLFTPRNGIKELC 440

Query: 500 PHDF-----FTLILGAKKGRQQFISRFGNEVIDV----LDEFLNFTLRNEQN-SYSSLQE 549
            +        + I   +       ++   E +      ++   +     E +    +L+ 
Sbjct: 441 DYLIELIKDISTIYRKEGEYNDIFNQLYRESLFRSHTKINRLYSLIESGELSIRTDTLKR 500

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           LI+++                 +++M V   + L+   + ++            +   I 
Sbjct: 501 LITKVLTASNIPFH--GEPAIGMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGESSFIP 558

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
            +L    G+     ++              +   + E   LLY                N
Sbjct: 559 YNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAENITLLY----------------N 596

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
           TS++  +       M+         + +  L    +       +           E    
Sbjct: 597 TSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSIQEIQIEKTP------EVLRR 650

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
           I +  D       + SP   +      L             + + ++  +   G I H  
Sbjct: 651 IYRTYDSTNPSSVILSPSALNAYLDCRLRFYYRYVARLKTPDEVSAEIDSALFGTIFHLS 710

Query: 790 LQV----IFTLPEHKRKNFITSYCTKNAKLWP-------AKEYKNLLLS-----ITRLLE 833
            Q+    +    +  +K  I        KL          + +K            +L+ 
Sbjct: 711 AQLAYTDLTANGKMIQKEDIERLLRNEVKLQSYVDQAFKEELFKVAPEEKPEYNGIQLIN 770

Query: 834 N----PMMTTAMSCDSY----------SEVSVSGKINCPKKDIIIS--GRIDQISISQQN 877
           +      +   +  D             EVS    I   +    +   G ID++   +  
Sbjct: 771 SKVIVSYLKQLLRNDLQYTPFEMVAMEKEVSEEITIQTGQGPFTLRLGGTIDRMDAKEST 830

Query: 878 IFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEKILKD 913
           + I +YKT      P  IE +         +I Q  +Y  I+  
Sbjct: 831 LRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSR 874


>gi|325529111|gb|EGD06100.1| putative exodeoxyribonuclease V beta chain [Burkholderia sp. TJI49]
          Length = 290

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 56/236 (23%), Gaps = 45/236 (19%)

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNR 782
             E         D+ +      + +  D +      P+ +        + +L   +    
Sbjct: 28  AREEAGVAAVPDDDLRPDHDALAALVPDGDFIVADTPAVV-----PPDDDILVFPRGAAA 82

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP------- 835
           G  +H+L ++         +                +    L   + RL ++        
Sbjct: 83  GECLHRLFELSRFTQPDTWREAALGALHDRPVEAEPELAARLPAMMVRLGDDVVHTELVP 142

Query: 836 --MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGRIDQI 871
              +          E+             +                      I G ID I
Sbjct: 143 GMRLADLDPAKRLDEMGFLFPAPSLDLGALRRLLVAHGYPDVALEAGTLAGFIKGFIDMI 202

Query: 872 SISQQNIFIFEYKTHH---------HVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
                  +I ++K++H             ++    + +  Q  +Y   L      +
Sbjct: 203 VEHDGRFWIVDWKSNHLGNTPDAYGPRALDVAMADHAYHLQALLYTVALHRYLRGR 258


>gi|149371104|ref|ZP_01890699.1| hypothetical protein SCB49_05445 [unidentified eubacterium SCB49]
 gi|149355890|gb|EDM44448.1| hypothetical protein SCB49_05445 [unidentified eubacterium SCB49]
          Length = 908

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/557 (10%), Positives = 147/557 (26%), Gaps = 95/557 (17%)

Query: 409 RFILTDHLAIKDLMALGRF----ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
           +F   DH+  +D++ +       IL +E       +    L   + + +  I   +++  
Sbjct: 348 KFKQGDHIYFRDIINILSHPFGKILFKEQTEIIKYLQDKNLAYCTSEQLQTI--AKNDKV 405

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
            +      + +      Q  ++YI          +       +       +Q        
Sbjct: 406 IMNSIFNDWDHKKTPAIQRCLEYILIAKEQEDISTTDQVV--LFQLHGLFKQL------- 456

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             + L E  +        + +        +       K       + ++IM V  ++ L+
Sbjct: 457 --ENLQEQYS----YLNTTKAVHNLYKQLIGTTTLDYKGDAY---DGLQIMGVLESRVLD 507

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V +                 I   L         +P+   ++ I +           
Sbjct: 508 FKNVIMTSVNEGTLPSGKSNASFITYDLK----QQYNLPKYTEKDAIYAYH--------- 554

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
                  Y  + RA +  ++    +         R    +           +   L    
Sbjct: 555 ------FYHAIQRAQNCTLLYNTHSDGINTGEKSRFIKQL-----------EVYNLPEHN 597

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                I +      P    +++ + +  ++ +        S +   I  P       I  
Sbjct: 598 LTKSVIGHTTDISAPVKKTVKKTDAVMDIIKKIGTRYYSPSALTAYIRNPIDFYFQRILK 657

Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNL 824
             +               G I+H  L+ ++T   +KR             L   +  +  
Sbjct: 658 LKELEEVEETV--AANTMGTIVHNTLENLYTPLINKRLTAEN--LKALLPLIENEVKRQF 713

Query: 825 LLS---------------------ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK--- 860
                                   +   ++   +    + +     S+  +     +   
Sbjct: 714 TDEYKEGDYTKGKNLIIFEVVKKFVQNFIQLE-LKDVAAGNEIVVQSLEEEFKETLEIPS 772

Query: 861 ---DIIISGRIDQISISQQNIFIFEYKTHHHVPQEI-----EHIPYTHI----AQLSIYE 908
               +II G++D+I      + I +YKT      ++     + I   +      Q+  Y 
Sbjct: 773 INSSVIIGGKVDRIDRYNGTLRIIDYKTGKVAASDLYVIDWDVIKEEYKYSKAFQVLTYA 832

Query: 909 KILKDSYPNKSLVCLLI 925
            I +  Y   +    +I
Sbjct: 833 FICQKKYGFTTAEAGII 849


>gi|295087178|emb|CBK68701.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens
            XB1A]
          Length = 1624

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD    +  ++++L  ++            + AVGD+ Q+IY F G++   + R
Sbjct: 1197 LVIDEAQDMGAEEHALVKALIANY--------EEMRVIAVGDDDQNIYEFRGSDSGYMYR 1248

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
                            + +E+  ++RS    +   +         
Sbjct: 1249 L---------AQESGSTFVEMTENYRSARQPVDFANGFLKNIHKR 1284


>gi|229818114|ref|ZP_04448396.1| hypothetical protein BIFANG_03406 [Bifidobacterium angulatum DSM
           20098]
 gi|229784718|gb|EEP20832.1| hypothetical protein BIFANG_03406 [Bifidobacterium angulatum DSM
           20098]
          Length = 1388

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 72/567 (12%), Positives = 154/567 (27%), Gaps = 78/567 (13%)

Query: 25  YFQVSDINKYVSLSMETGNPTIL-KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKN 83
             Q + + + +++ +       L      L+            +   +            
Sbjct: 112 AEQDALLRQVLAVHLRHAVSGDLCDTCHLLRYYFAQDDWANAVAPTLNAGTASNGGNIGA 171

Query: 84  IITQEI------------NKKSPDLKEKLKKSQDEFIKIRDRFN-----TYKMFKSTLAS 126
             T  I             +      ++L  + +    + +         ++  +     
Sbjct: 172 GSTAAIFENGISASFVSQLRDMLARMDELGVTPEREGDLLEAPRHFPQGDWRDEERLTVQ 231

Query: 127 LTLAKYLNAHYEEAKKK----NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             LA  L   Y  A          LD   L++    +L++ D S       D     +++
Sbjct: 232 WRLAFALRGEYAHALADTYSGEYRLDASKLLVEGAAVLERPDGSDDGLLA-DMVPRMLIV 290

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           D+ QDT+L     I +L          H+    +   G+  +S+ +F G+ P+ +     
Sbjct: 291 DDFQDTTLAGLRFIETL----------HNRGTAIVLAGNPDESVQTFRGSYPEYLFD--- 337

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
               RA +   +  +IEL    R         D        A  +S   T+  R+     
Sbjct: 338 ----RAQHGDLQSRLIELEKDRRDR----DAPDY---RTLVATRVSLSITSPERNAPPMA 386

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
            + G + +          +          Y  +  +          + + I         
Sbjct: 387 QRPGKMPVCPGAWPVSAVKHTDDSLQTAIYRSAREELDD-------VVWRIKR------- 432

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDL 421
             +   R  +  D+ V+              R       + V  +     L     ++ L
Sbjct: 433 --SHLDRGTEWNDMAVIAHDNATVRQFGERLR----RDGVPVRYSSVTRPLKSEPFVQGL 486

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
            AL      +E  L    M    +  F+   I  +        T      + A   I   
Sbjct: 487 FALIELAQLREQGLDGTDMSLKNIGAFARSRIAALMGSA--LVTTGGKPGEGAPARIEPI 544

Query: 482 QHVIKYIHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR 538
           +  +  +  L  +   A   + H           GR    S     V +           
Sbjct: 545 ESAMSSLESLAGLEGVADDPNGHAVADEPTDETAGRAVDGSELARIVREW-----EALKE 599

Query: 539 NEQNSYSSLQELISELEQYPPTIKRAH 565
           +E+ + + +   I+++       + A 
Sbjct: 600 SERRNGADMTIQIADVADGTGEERPAA 626



 Score = 54.2 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/591 (9%), Positives = 130/591 (21%), Gaps = 159/591 (26%)

Query: 476  CGISKFQHVIKYIHELIHIAQFCS------PHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
              +  FQ V + I  +    +                + G  +  Q+       E     
Sbjct: 660  PHLKAFQRVFRLIDRVAEGMRALPSKEPQFVLALAWDVTGVAEHWQRMALMNTPEGRAAN 719

Query: 530  DEFLNFTLRNEQNSYS----SLQELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGL 583
            D         +          +   I ++                   V + T   A G 
Sbjct: 720  DRLDAAMRLFQYAQGGMIGTDIDGFIDQVRSMEIEADSLAKTGPVEQAVTLTTPAGASGR 779

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
                V++      V+       +    +L     +   +    +     S       ++ 
Sbjct: 780  HWACVWIPALQQDVWP-----NLAERATLFGGEDLADVVLHGDAAAQPCSSGHDARLETV 834

Query: 644  QEEYNRLLYVGMTRASDQL-----------------------------IICKHSNTSNEK 674
                 +   V +TR +  +                             +       S + 
Sbjct: 835  LASEKKSFLVAITRGALVMVSAVLSDDTTPSDFMYGYLPEHCPRDIDAVTFATVGESGDN 894

Query: 675  KSNQRTWYD----------MVYDSFHNDERVKKIKLTNSINKD---EWIAYEWSTHHPEN 721
                    D          M+     +  +    + T ++  +   +    ++       
Sbjct: 895  GEFAGLDADPRGLVAQARVMLARYPEHSPQACDARKTLALLAEHGIDVADPDYWPFLDGA 954

Query: 722  TPLEREETIKQLMDEQKIPKKLFSPIKNDIN----EPYILNPSTIDTKGKTNLESLLS-- 775
               ER +  +   D  +        ++  ++        L+PS +D      +  LL   
Sbjct: 955  DSTERRDGAQNTADAARKAGITSRSVEETLDDNGSPVVTLSPSAVDNLWACPVCWLLENR 1014

Query: 776  ------DNQTFNRGLIIHKLLQVIFTLPEHKRK------------NFITSYCTKNAKLWP 817
                   +   + G +IH + Q                                   + P
Sbjct: 1015 FAGPRIGSAATSFGTLIHAVAQKGSAEGLDLPGAVAGSSVEGAVDAVAHRLVDIYDAIKP 1074

Query: 818  A-KEYKNLLLSITRLLENPM-------MTTAM--------------------SCDSYSEV 849
                        T +L++         + +                         +  E 
Sbjct: 1075 DFSSIAKAAERYTAMLKDEQAETTLHNLASYFVESNASSYLNKNEGKFDIGTLESASCEE 1134

Query: 850  SVSGKINCPK-----------------------------------KDIIIS--GRID--- 869
              S +                                        +D+ +   GRID   
Sbjct: 1135 EFSARFGLDDICMAYNALPGMSPVGRTALMQLMGILVGGWPEGMREDLTVRLSGRIDRKE 1194

Query: 870  --QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
              ++    Q I + +YKT     +++  I      QL  Y+  L   +P  
Sbjct: 1195 MRRLRDGSQTIRLIDYKTGRK--RQLAEIFND--LQLVCYQLGL--MFPEH 1239


>gi|224099651|ref|XP_002311566.1| predicted protein [Populus trichocarpa]
 gi|222851386|gb|EEE88933.1| predicted protein [Populus trichocarpa]
          Length = 1950

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 28/162 (17%)

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             L   +   YE+ K +N   DF+       D +    +           ++ + IDEVQD
Sbjct: 1190 DLIYDIFEDYEKMKAENG--DFD-----MADFVNDLHLRLKTYKYEGDAMDFVYIDEVQD 1242

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL---REKRIN 244
             ++ Q  + + +  +   G             GD  Q+I    G + +         +  
Sbjct: 1243 LTMRQIALFKYICRNVDEG---------FVFCGDTAQTI--ARGIDFRFEDIRSLFYKEF 1291

Query: 245  -------QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
                          GQ   I  L  +FR+ A +L +   V  
Sbjct: 1292 VLASRSAGNDRNEKGQISKIFHLNQNFRTHAGVLNLAQSVID 1333


>gi|222084228|ref|YP_002542754.1| double-strand break repair protein AddB [Agrobacterium radiobacter
           K84]
 gi|221721676|gb|ACM24832.1| double-strand break repair protein AddB [Agrobacterium radiobacter
           K84]
          Length = 1063

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/634 (11%), Positives = 152/634 (23%), Gaps = 76/634 (11%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
           P   S      +L + ++    A  IA  +   +          +  +   D        
Sbjct: 353 PDAISNAFADVALIEAANEREEATAIAIALRLALEKPGQDGGESQAALITPD-------- 404

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                +          + I+   +    LT       L  L    L   D ++ V +LK 
Sbjct: 405 ---RNLARRVTAELARFGITADDSAGTPLTATPQGALLQLLLEATLRPGDPVAIVSLLKH 461

Query: 444 PL--FNFSEDDIFKICTQRH--------------------ETETVYEYIQKFANCGISKF 481
           PL  F   +D +                            + +   +   +         
Sbjct: 462 PLARFGLPQDALQLGVDALEILALRGGIADVDIGALEPLLDRQLAEQAKNRHTPQWRKSL 521

Query: 482 Q-HVIKYIHELIHI---AQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFT 536
               +    EL      A                    ++  R G  +    +DE  +  
Sbjct: 522 APEAVDRARELARQVSGACEPLASALSQQSSDGLPTLSEWAERTGRALEAVAIDERGSLA 581

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAHSANHN---EVRIMTVHTAKGLESPVVFLVDT 593
                 +  +L  L+ E+      ++       +    +        + L  P +F+  T
Sbjct: 582 ALWSGEAGDTLASLLKEIIDTDGQLEADGPQWIDIMAALCAGQAVKPRALSHPRLFIFGT 641

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
                       +  +   +           S++    +       +         +   
Sbjct: 642 LEARLQSVDTLILGGLNEGSWPGQTANNPFISRTMKTEIGLEPPERRIGQLAHDFEMAN- 700

Query: 654 GMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK-LTNSINKDEWIAY 712
                +  LI  +     +      R    ++           K +              
Sbjct: 701 ----GTRDLIYSRALRQGSTPTVASRWLQRLIALGGKAFTSELKARGDQYRHWAGMIDQG 756

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
           E         P    E   +     ++ +    P          L+P          ++ 
Sbjct: 757 ENQAPAQRPAPRPPAELQPKSYSFSEVGRLRRDPYAIYARRVLRLDP----------IDP 806

Query: 773 LLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
              D     RG + HK++   I         +   +      +L+ A++    + S+ R 
Sbjct: 807 FNRDPGPAERGTLYHKIIDRFIREGHIAGTPDASLAMDHILTELFDAEQLPVHIDSVWR- 865

Query: 832 LENPMMTT------AMSCDSYSEV-----SVSGKINCPKKDIIISGRIDQISISQQNIF- 879
              P              +   E+      V   +      I ++G  D+I         
Sbjct: 866 ---PRFREVARAFIIWEAERRPEIRKTATEVPAGVQIEPIGIRLTGVADRIDFKGGKAAD 922

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           I +YKT ++              QL++    LK 
Sbjct: 923 IIDYKTGYNP--SPAQARTLLDPQLALEAYALKA 954


>gi|258512042|ref|YP_003185476.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478768|gb|ACV59087.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 1169

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 65/675 (9%), Positives = 161/675 (23%), Gaps = 127/675 (18%)

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            +      +     +A  I++++  +          ++ +DI V V        I     
Sbjct: 344 RVSAFGDRAEELCAVADEIAHLVQHER---------VRPRDIAVCVPTVDG---IGRDLA 391

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                  + V  +    L DH   + L      + +  D  +   +L+ PL      + F
Sbjct: 392 DELEVRGVPVSIDSFATLADHPVGQLLRGAIGAVRTGFDLDTIAALLRCPLVPVKRREAF 451

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK-- 512
            +  + H       ++        ++       + +           D    ++ A    
Sbjct: 452 DLYLREHGVSGFAAWLAPEPWAFAARAPRSASGLRDEEADEIRRQLGDALRPVIQAFAQP 511

Query: 513 ----GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE--------------- 553
                          +   V D      ++   +  + +    +                
Sbjct: 512 TLRLLEAARALWELLQAFRVKDALAQSVVQVGDDPMAGVIHEQAWSGVTALLDDLATLEP 571

Query: 554 -------------LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                        LE           ++ + V +     A     P VF+V         
Sbjct: 572 EIALPAYEVADLVLESMASLRLTRIPSDVDAVFVCDFARADNWSRPRVFVVAADDASLPP 631

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           +      +              P  ++  +    L              + Y  MTRAS+
Sbjct: 632 RVEPSGILRDDERLAFAEVFLRPLGRTSEDERRALE------------CMPYRVMTRASE 679

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI---------------------- 698
            L++   ++    ++        +V     + +  +                        
Sbjct: 680 ALVVTYAASEGGIERHLAPALASLVERGHLSIDAARGEGAVPVHPVQAMRLLADALSRVH 739

Query: 699 ---KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                                          +  +  L    +  +     I++   +P 
Sbjct: 740 TGAPFERVTQDPVVQDVLTYMWTGAGDVARFQRVLAGLCHRPRPWRLPAEWIRDLYGDPI 799

Query: 756 ILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK-- 802
            ++ S ++T  K +               L      N G  IH  +Q+         +  
Sbjct: 800 RVSVSRLETYAKCSYRHFAQYALRLEPLALQPEAERNAGTWIHAAVQLATQRLADDHRRL 859

Query: 803 -NFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTA------------------M 841
                            +  +       +   LE P +                     +
Sbjct: 860 SELGHEELETALLEIAHQALEQAAQDTKLQSTLERPDVAVYVEERRRHFEFVVRAIWMQL 919

Query: 842 SCDSYSEVSVSGKINCPKKD------IIISGRIDQISISQQN---IFIFEYKTHHHVPQE 892
           +      + +  +             +++ GRID++   +Q    + +++YK+       
Sbjct: 920 ARGQMRPLWLEKEFRDVDMGAWNGVRVVLDGRIDRVDRLEQGELALCVYDYKSS-ETSLH 978

Query: 893 IEHIPYTHIAQLSIY 907
              +      QL +Y
Sbjct: 979 PSKVHQGLQLQLLMY 993


>gi|257052519|ref|YP_003130352.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
 gi|256691282|gb|ACV11619.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940]
          Length = 613

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 73/239 (30%), Gaps = 46/239 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   +   K ++ ++ F D++                   +   ++++ IDE QD +
Sbjct: 187 VPEVIRAWRSYKGEHGLVGFADMLERVKQ------------RSLLPSVDYLAIDEFQDIT 234

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q++V                        GD+ Q +Y++ GA+P  +L           
Sbjct: 235 TLQYDVYEEWKAHVDHA----------LIAGDDDQVVYAWQGADPNLLLE---------- 274

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
              ++   + L  S R  ++IL VV +  +  +  Q  +        +  +       + 
Sbjct: 275 ---EEGEDVILDTSHRLPSEILEVVQREVTHIDQRQEKNLSPRKQGGNVEAVRN-PSMLD 330

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
           L   V    +         + +             + + I   I   I   T+      
Sbjct: 331 LVRNVRGTVEEDDGTIMVLFRA----------RYQMFQFIDEFIDEGIPFRTMTDQRMW 379


>gi|224477789|ref|YP_002635395.1| Superfamily I DNA and RNA helicases [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422396|emb|CAL29210.1| Superfamily I DNA and RNA helicases [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 510

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 73/231 (31%), Gaps = 32/231 (13%)

Query: 81  QKNIITQEINKKSPDLKEKLKKSQD-EFIKIRDRFNTYKMFKSTLASLTLAKY-LNAHYE 138
           +K        +      +++   Q      + D     ++ + +       +      YE
Sbjct: 142 KKYPDESSFKRPYQTFSDEISWLQQMAVSTLEDYEKIERIGRRSTRIDRSKRKYFYEVYE 201

Query: 139 EAKKKN----CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           +  +         DFED+     +LL+K +     R K+     +ILIDE QD +     
Sbjct: 202 KYLENREEDDRYYDFEDIGSLIRNLLEKIEDQDK-REKLLS-FKYILIDEFQDFTSDMLM 259

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
            + +L++              L  +GD  Q ++            ++   +    N    
Sbjct: 260 TVNALSDKNGA----------LVLLGDINQGVFG-----------KRISFKSLGINMNS- 297

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +   +L  ++R++  I  + +++          S +          +    
Sbjct: 298 YKKYKLIQNYRNSRPISELAEEI--SNSPYFDKSNEFYAEAELGIRKGQDP 346


>gi|158319739|ref|YP_001512246.1| UvrD/REP helicase [Alkaliphilus oremlandii OhILAs]
 gi|158139938|gb|ABW18250.1| UvrD/REP helicase [Alkaliphilus oremlandii OhILAs]
          Length = 769

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 18/126 (14%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +  HI++DE QD    +  V++ ++ +            +   VGD  Q IYS+ G   
Sbjct: 526 NKYTHIVVDEAQDFDEFKISVLKEISLND-----------SFTFVGDLSQGIYSYKG-IN 573

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                 K++ Q +  +         L  S+RST +I+ + ++V    ++ + +  +    
Sbjct: 574 SWSNVMKKVFQDKHYDFH------ILTTSYRSTVEIVDLANEVIKKCDHLEAILAEPVFR 627

Query: 295 IRHRSS 300
              + S
Sbjct: 628 HGDQPS 633


>gi|265762686|ref|ZP_06091254.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263255294|gb|EEZ26640.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 1624

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD    +  ++++L         T++    + AVGD+ Q+IY F G++   + R
Sbjct: 1197 LVIDEAQDMGAEEHALVKALM--------TNNEEMRVIAVGDDDQNIYEFRGSDSGYMYR 1248

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
                            + +E+  ++RS    +   +         
Sbjct: 1249 L---------AQESGSTFVEMTENYRSARQPVDFANGFLKNIHKR 1284


>gi|187932856|ref|YP_001884279.1| ATP-dependent nuclease subunit B [Clostridium botulinum B str.
           Eklund 17B]
 gi|251764547|sp|B2THC7|ADDB_CLOBB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|187721009|gb|ACD22230.1| ATP-dependent nuclease subunit B [Clostridium botulinum B str.
           Eklund 17B]
          Length = 1152

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 110/955 (11%), Positives = 269/955 (28%), Gaps = 231/955 (24%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
           D    + D+ +  ++ +       + +         K  +  +D +D            +
Sbjct: 137 DALRDLTDKIDDNELVEKIRELSLIYEEF-----NVKMHSSYIDTDD------------E 179

Query: 165 VSAWIRYKIDQEI---NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           ++   +  +   I   + I IDE    +  Q E+IR ++                     
Sbjct: 180 LTLLAKKLLANNIYANSEIWIDEFTTFTPQQLEIIRIIS--------------------- 218

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
            K S+           L   +I    A +    FS IE   +      IL    K+    
Sbjct: 219 -KTSV-------VNITLCMDKIENSDAEDITNVFSSIENTENR-----IL----KLMEEN 261

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                   +  + + +R     ++  ++ +         +   +        ++  +   
Sbjct: 262 NIGYLNPINLNSKLPYRFKNSEELAHIEKYCITYPFKSYKGKNKDVRLYKANNTYDEI-- 319

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                 ++A  I  ++           R  + +DI V+ R          +   + NDY+
Sbjct: 320 -----EKVAQDIIRLVRD---------RNYRFRDISVVCRN---IEDYNKIISVIFNDYE 362

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT--- 458
           I    + +  L ++  I  + +    +L      S    LKS L  F+  DI ++     
Sbjct: 363 IPFFMDKKIKLLNNPLIILITSAFEVLLKNWSYESVFKYLKSGLTGFNTYDIDRLENFVL 422

Query: 459 --------------QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS----- 499
                         ++ +  ++     +      +  + V   +     + +        
Sbjct: 423 EHGIKSYKWNEEEIKKLKNISIENGATEEELTIFNVMEEVRNSLISFHKLIEGKHNVRDI 482

Query: 500 ---PHDFF----------TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
               ++F             I+  ++ + +   +   +V  ++ + L+  +    +    
Sbjct: 483 CKALYEFLLSIKAFERIDEWIIKFEELKLEDKVKEYKQVESIVIDMLDQAVEVMGSDVVD 542

Query: 547 LQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             E    L                ++V +  +   KG E   +++V     +    H  +
Sbjct: 543 TFEFFKILNSGFENEEIGVIPVALDQVNVGDIARIKGREVKALYIVGINDGILPAAHKDE 602

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             +               + +        ++    +S   E   ++Y  +T AS+ L++ 
Sbjct: 603 GILSD-------------RDRIELKEFGVVLAADGRSKAFEEQFVVYTALTIASEYLMLS 649

Query: 666 KHSNTSNEKKSNQRTWYDM-------------VYDSFHNDERVKKIKLTNSINKDEWIAY 712
                   K                       +YD    ++   K+        +   A 
Sbjct: 650 YPMADFEGKSLRPSIIISRIKKILPNLVEESSLYDLSKGNDHFNKVISPIPTFNELIFAL 709

Query: 713 EWSTHHPENTPL---EREETIKQLMDEQKIPKKLFSPIKNDINEPYI------------- 756
                  E       E     K+  D +   + +F  ++       +             
Sbjct: 710 RRELEDEEIDEEYWGEVYNWFKENEDFKWKIENIFKGLRYSNTGEKVSRNKLLSLYKNDL 769

Query: 757 ----LNPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLL----------- 790
                + S ++   +      +            +    + G  +H +L           
Sbjct: 770 GKLSFSVSRLEKYAECPFSYFIQYGLKAKNRKVYEFTPPDLGSFVHDILDSFTNKVKKEK 829

Query: 791 ----------------QVIFTLPEHKRKNFIT-----SYCTKNAKLWPAKEYKNLLLSIT 829
                           ++I T  +    + +       Y +K  K   +K    +   + 
Sbjct: 830 IAWSDLDMIKCKNIVSELIDTKLKEDSGSILNSTNKYKYFSKRFKRVISKSVSVISEQMR 889

Query: 830 R----LLENPMMTTAMSCDSYSE-VSVSGKINCPKKDIIISGRIDQ---ISISQQNIF-I 880
           R    +  N       S  SY++  ++  ++    + + ++GRID+   + +       I
Sbjct: 890 RGEFEVFNNE-----FSFGSYNDGEAIVLELP-SNEKVYLNGRIDRIDTLDLEGSTYLRI 943

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---------KDSYPNKSLVCLLIY 926
            +YKT  +   ++    Y    QL +Y   L         K + P      +L +
Sbjct: 944 VDYKTG-NKHFDLNEFYYGLQMQLLVYLDALLKNSEYILKKQALPG----AVLYF 993


>gi|308069948|ref|YP_003871553.1| ATP-dependent nuclease subunit B [Paenibacillus polymyxa E681]
 gi|305859227|gb|ADM71015.1| ATP-dependent nuclease subunit B [Paenibacillus polymyxa E681]
          Length = 1189

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 69/710 (9%), Positives = 181/710 (25%), Gaps = 144/710 (20%)

Query: 321  QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
            +  P+     +  +   +   A    RR+A                     + +++ + V
Sbjct: 326  EEQPEGIKLYAAANRRAELEGAVREMRRLAR----------------DEGARYREMALFV 369

Query: 381  RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
            R              +   Y++ V  + R  +  H  ++ + A    +  +         
Sbjct: 370  R---HIEDYEPWVEPIFKQYEVPVFLDQRRSVLHHPLVELIRASLDIVQRRWRYEDVFRA 426

Query: 441  LKSPL-----FNFSEDDIFKICT---------QRHETETVYEYIQKFANCGISKFQHVIK 486
            +K+ L        S +++ ++            R      ++ +   +     + ++  +
Sbjct: 427  VKTDLLLPLDGRVSREEMDRLENYVLACGIQGSRWTDGRPWQAVPSLSLELEEQERNRRR 486

Query: 487  Y----IHELIHIAQFCSPHDFFTLILGAKKGRQQ----FISRFGNEVIDVLDEFLNFTLR 538
                 + EL           F   +  A+   ++    ++     E+   LD F++    
Sbjct: 487  DETLDLMELCRDVIVTPLRAFEKRVGKARTALEKCEAVYLLLEDAEIGHKLDAFIHQAEE 546

Query: 539  NEQNSYSSLQE--LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              +   +        + LE     ++       +      V      E  +  +     Q
Sbjct: 547  AGKPEQAKEHRQVWDAVLELLDQIVEMMGDERLDTSLFAGVLETGLAEFRMGLVPPALDQ 606

Query: 597  VFSHKHIK--------------KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
            V      +                 +MP++  + G+     ++      V       +  
Sbjct: 607  VLVGNTDRTRVSGIQHAFVLGMNEGVMPAVFHEDGVLNEQERTALNERGVELAPDMTR-- 664

Query: 643  TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK--KIKL 700
               +   L Y  +T A   L +         K          V   F + +        L
Sbjct: 665  RLLDERFLAYTALTSAGKSLWMSYAVTDEEGKSLLPSELVRHVRHLFPSLDERPLAGYPL 724

Query: 701  TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--- 757
                   +W      +        +     +         +           E   L   
Sbjct: 725  PGDAWTTQWEYASHPSEALPQLIAQLRHWRRGGDILSPWWEVYNWYASQQGREKDKLRQL 784

Query: 758  ---------------------------NPSTIDTKGKTNLESLLS-----------DNQT 779
                                       + S ++           S             + 
Sbjct: 785  LTSLFYENHAEMQKETSRRLYGSKLRTSVSRMERFVACPFSHFASHGLRLKERQMYRLKA 844

Query: 780  FNRGLIIHKLLQVIF-----------TLPEHKRKNFITSYCTKNAKLW------PAKEYK 822
             + G + H +L  +            +L   + +    S   + A          +K Y 
Sbjct: 845  PDIGQLFHAVLGEMAINLRNRNVSWGSLSTEECRQEAESTVERLAPRLQGEILMSSKRYG 904

Query: 823  NLLLSITRLLENPMMTTAMSCDSYS---EVSVSGKINCPKKDII--------------IS 865
             +L  +  ++    +   +   +     E  +  +++      +              I 
Sbjct: 905  YILRKLKDIVSRASL--ILGEHARRGSFE-PIGLELDFGPGQQLPPLSFRLDNGVVMEIV 961

Query: 866  GRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            GRID++ +++      + + +YK+     + +  + Y    Q+  Y  +L
Sbjct: 962  GRIDRVDVAEGEKGLLLRVIDYKSSQKDFK-LHEVYYGLSLQMLTYLDVL 1010


>gi|145551446|ref|XP_001461400.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124429234|emb|CAK94027.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2352

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 21/163 (12%)

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLI-INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                   YE+ K +    D  DL+     +L    DV   +         ++L+DE+QD
Sbjct: 655 FVYEAFQIYEQLKYQLGYYDLLDLVNHINQELAFGDDVIENVH--------YLLLDELQD 706

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
                  ++  LTE              LF  GD  Q+I    G +   V       +  
Sbjct: 707 VPRAVLILLDQLTELG------------LFCCGDNAQNIAKGIGYKFFEVQNCLLSYRNS 754

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
                +   I +L ++FRS  +IL + + V  + E       D
Sbjct: 755 KKKVHRNLKIFDLSVNFRSHNNILQLANSVIRMIEILFPYKID 797


>gi|294675595|ref|YP_003576210.1| double-strand break repair protein AddB [Rhodobacter capsulatus SB
           1003]
 gi|294474415|gb|ADE83803.1| double-strand break repair protein AddB [Rhodobacter capsulatus SB
           1003]
          Length = 977

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/469 (10%), Positives = 121/469 (25%), Gaps = 39/469 (8%)

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG-RQQ 516
               +     +  ++  +  ++     +         A   +             G    
Sbjct: 443 EALRDWGGTADPERQHWSDWLAALIDAVPAGGNHPVSAWLETLSALLDGFAAGPGGSVAA 502

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-ANHNEVRIM 575
                G           +   ++E     S       ++      +   + A H  V  +
Sbjct: 503 SELWLGEAGQAAFRTLSDLAAQDETGLTVSAANFADLIDTLLNEGQVRSTLAAHPLVTFL 562

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               A+   + +V L     + +         +   +  D G+ +   Q     +     
Sbjct: 563 GTLEARAHGAELVVLAGLNEKSWPEAPSPDPWLSRKMRLDAGLLLPERQIGLSAHDFQQA 622

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           I                     A+ ++++ +    S  +    R    ++  +       
Sbjct: 623 I---------------------AAPEVVLSRARRDSEAETVPSRWLNRLLNLAGGLTAAQ 661

Query: 696 KKIKLTN-SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
               L         ++        P+           +   E +  +   + IK  I +P
Sbjct: 662 GPEALAQMRARGARFLDLASQLDLPQERLAPAPRPAPRPPAEARPRQLPVTAIKTLIRDP 721

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-LPEHKRKNFITSYCTKNA 813
           Y +  + I       L+ L        RG  +H+++++  T        +    + ++ A
Sbjct: 722 YAIYAARI--LRLRPLDPLKPGPNPRLRGEALHRVVELFVTGFDPKNSLDSGQKHLSELA 779

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTT---AMSCDSYSE-----VSVSGKINCPKKDIIIS 865
           +    +           L     +     A      +E     +  S  I        ++
Sbjct: 780 ETVLQEMIPWPSTQRLWLHRLLRIAPQLVAQEAQRRAEATPAVIETSASIELGPTGFTLT 839

Query: 866 GRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
            R D+I         +++YK+        E        QL +   +++ 
Sbjct: 840 ARPDRIDLQHDGTALVYDYKSGTPPK---EAEVRHFDKQLLLEAAMIER 885


>gi|310643060|ref|YP_003947818.1| ATP-dependent nuclease subunit b [Paenibacillus polymyxa SC2]
 gi|309248010|gb|ADO57577.1| ATP-dependent nuclease subunit B [Paenibacillus polymyxa SC2]
          Length = 1188

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/711 (9%), Positives = 171/711 (24%), Gaps = 138/711 (19%)

Query: 317  QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
            +  +   P+     +  +   +   A    RR+A                     + +++
Sbjct: 321  EQWADTQPEGIKLYAAANRRAELEGAVREMRRLARE----------------EGARYREM 364

Query: 377  LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
             + VR              +   Y++ V  + R  +  H  ++ + A    +  +     
Sbjct: 365  ALFVR---HIEDYEPWVEPIFKQYQVPVFLDQRRSILHHPLVELIRASLDIVQRRWRYED 421

Query: 437  FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV------IKYIHE 490
                +K+ L    +  + +    R E   +   IQ         +Q V      ++    
Sbjct: 422  VFRAVKTDLLLPLDGRVSREQMDRLENYVLACGIQGSRWTDGRPWQAVPSLSLELEEQER 481

Query: 491  LIHIAQFCSPHDFFTLIL-------GAKKGRQQ---------FISRFGNEVIDVLDEFLN 534
                 +     +    ++         + G+ +         ++     E+   LD F++
Sbjct: 482  NRQRDETLDLMELCRDVIVTPLHAFEKRMGKARTALEKCEAVYLLLEDAEIGHKLDAFIH 541

Query: 535  FTLRNEQNSYSSLQE--LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                +     +        + LE     ++       +      V      E  +  +  
Sbjct: 542  QAEESGNPEQAKEHRQVWDAVLELLDQIVEMMGDERLDTALFAGVLETGLAEFRMGLVPP 601

Query: 593  TGSQVF--SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK--------- 641
               QV   +    +   I  +        +          +       L +         
Sbjct: 602  ALDQVLVGNTDRTRVSGIQHAFVLGMNEGVMPAVFHEDGVLNEQERTALNEQGVDLAPDM 661

Query: 642  -STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK--KI 698
                 +   L Y  +T A   L +         K          V       +       
Sbjct: 662  TRRLLDERFLAYTALTSAGKSLWMSYAVTDEEGKPLLPSELVRHVRQLLPGLDERPLAGY 721

Query: 699  KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL- 757
             L       +W      +        +     +         +           E   L 
Sbjct: 722  PLPGDAWTTQWEYASHPSEALPQLIAQLRHWRRGGDILSPWWEVYNWYASQQGREKDKLR 781

Query: 758  -----------------------------NPSTIDTKGKTNLESLLS-----------DN 777
                                         + S ++           S             
Sbjct: 782  QLLTSLFYENHAEMQKETSRRLYGSKLRTSVSRMERFVACPFSHFASHGLRLKERQMYRL 841

Query: 778  QTFNRGLIIHKLL--------QV---IFTLPEHKRKNFITSYCTKNAKLW------PAKE 820
            +  + G + H  L        +      +L   + +    S   + A          +K 
Sbjct: 842  KAPDIGQLFHAALGEMAINLRERNVSWGSLSTEECRQEAESTVERLAPRLQGEILMSSKR 901

Query: 821  YKNLLLSITRLLENPMMTTAMSCDSYS--------EVSV-----SGKINCPKKDII---I 864
            Y  +L  +  ++    +   +   +          E+          ++    + +   I
Sbjct: 902  YGYILRKLKDIVSRASL--ILGEHARRGSFEPIGLELDFGPGQLLPPLSFRLDNGVVMEI 959

Query: 865  SGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
             GRID++ +++      + + +YK+     + +  + Y    Q+  Y  +L
Sbjct: 960  VGRIDRVDVAEGEKGLLLRVIDYKSSQKDLK-LHEVYYGLSLQMLTYLDVL 1009


>gi|258507444|ref|YP_003170195.1| UvrD/REP helicase [Lactobacillus rhamnosus GG]
 gi|257147371|emb|CAR86344.1| UvrD/REP helicase [Lactobacillus rhamnosus GG]
 gi|259648798|dbj|BAI40960.1| hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 595

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 97/323 (30%), Gaps = 44/323 (13%)

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           E   ++  + + DL   +   L K      + ++  +  ++++IDE QDT  IQ+ +I  
Sbjct: 185 EWLLRDGYVSYSDLKSLSYWYLSKHRDELSVAFE--KRFSYLMIDEAQDTDWIQFAIING 242

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           L          +     +   GD  Q++Y+ +G+E +           R  N   +   I
Sbjct: 243 LA---------NGKQLNVQRFGDPYQALYTIYGSETE------DSWNPRPDNEFYQTKEI 287

Query: 259 ELPLSFRSTADILTVVDKV-------FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                 R  + I  VV  V       F   +      +   T       +      ++  
Sbjct: 288 SETT--RFGSLIAAVVKHVCVQEYEQFHSNQELNFFPKYFMTYETGDELKEKHTRLIEDA 345

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSL------PQESSASILARRIAYTISNMIGTDTIFSN 365
                       P       + D +       +E S      R    I  ++    I   
Sbjct: 346 ASSNPNFRILQKPDAIVGIMHSDIIKVEPKYSKEGSEQRAHERSVSEIYALV----IKLL 401

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS--------VVGNDRFILTDHLA 417
                +   +  VL+R   D+ L             IS                +++   
Sbjct: 402 ANANGVSFMEESVLIRNNHDSNLELADVIQKLAKQNISLNEVQYHLYSLIGSETISEAYL 461

Query: 418 IKDLMALGRFILSQEDDLSFVCM 440
            ++   L + + + E +   + +
Sbjct: 462 QRECKHLLQDVSNLEGEPERMNL 484


>gi|326405600|gb|ADZ62671.1| ATP-dependent nuclease, subunit B [Lactococcus lactis subsp. lactis
           CV56]
          Length = 1099

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 86/739 (11%), Positives = 194/739 (26%), Gaps = 126/739 (17%)

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +         +   S         +L +       S  N +  S  + +  + +  + 
Sbjct: 244 RFRSKFPVELRKMAFSSVNEVYNKLTKLLDLDSRFAISDQNIEINSADAKYFRIWEAENQ 303

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            +    +A  I   I                KD  VLV    D        + +   Y+I
Sbjct: 304 KVEIEGVAKEIRQKISQGAF----------FKDFTVLV---GDPAAYEITLKEIFELYEI 350

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--------FSEDDIF 454
                    ++ H  +    +L     +       V +LKS ++             + +
Sbjct: 351 PFFYAQEESMSQHPLVIFFESLLSIKKNNYRTDDVVNLLKSKVYTDVNLDEEVIDYFEYY 410

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIK-----------YIHELIHIAQFCSPHDF 503
               +    +   E   +     I     + +           ++             D 
Sbjct: 411 VQKYKISGRKKFTEAFNESEFSKIELVNQLRENLLGNDSPLQAFLGTNRQKTGKKWVSDL 470

Query: 504 FTLILGAKK--------GRQQFISRFGNEVID-----------VLDEFLNFTLRNEQNSY 544
              +L               +  S   +++ D           +L+EFL           
Sbjct: 471 --QVLLENGNVMANMNTYFSEAESENKHQMADKHEQVWQMLISILNEFLAV---FSDEKL 525

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            S++ L   L        R   AN + V I      +   +  ++ +      F      
Sbjct: 526 KSVEFLDILLAGLKNAKYRQIPANVDVVNIKDYELVEPKTNKYIYAIGLSQTNFPRIKKN 585

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
              +           + I Q+   N  +  L     +  Q     L+        + L++
Sbjct: 586 STLLSDEE------RLVINQTTDENQFIEQLNVVNYQKNQFTVLSLVNSA----KETLVL 635

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                 +NE+      +   +  S     +  +        +    +    +   +    
Sbjct: 636 SMPQIMANEQGEFSPVFQLFLNHSDEKILQKIQEVNLFESLEHIGNSRSVISMIGKIERE 695

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--------------------------- 757
             E   K           L   +K++ +   IL                           
Sbjct: 696 LVETEEKNDDKRVFWSSILRILVKSNPDFQKILLDLAKDIDTVNLSKETLDKIYGDKLYA 755

Query: 758 NPSTIDTKGKTNLESLLSDNQTFN-----------RGLIIHKLLQVIFTLPEHKRKNFIT 806
           + S+ +       +  L                   G   H++ + +        +NF  
Sbjct: 756 SVSSFERFYNCEYQYFLETTLGLETFENIDINSKIVGNFFHEVFEKVMQEEALSAENFDE 815

Query: 807 --------------SYCTKNA-KLWPAKEYKNLLLSITRLLE----NPMMTTAMSCDSYS 847
                          Y T++A   +     + ++     +L+       + T ++  S+ 
Sbjct: 816 KLTKVLHDVDSNYSRYFTQDATARFTWTNLEEIVRQTATVLKETVSTDELKTLLTESSFG 875

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSI 906
            +  S   N    DI + GRID++     +     +YK+  H  + ++        Q   
Sbjct: 876 -LPKSELGNFSVDDIYLRGRIDRLDQLSSDYLGAIDYKSSAHSFK-LQDAYDGLSLQFMT 933

Query: 907 YEKILKDSYPNKSLVCLLI 925
           Y  ++K+++PN+ +   L 
Sbjct: 934 YLDVIKEAFPNQKIWGALY 952


>gi|293369071|ref|ZP_06615668.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292635839|gb|EFF54334.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 984

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 101/850 (11%), Positives = 239/850 (28%), Gaps = 139/850 (16%)

Query: 148 DFEDL---IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
           DF+D+   +++ + L                     L+D+ +     Q E I+   ++F 
Sbjct: 130 DFDDVDKNMVDADKLFSNLQDLKN------------LMDDYEFLDKEQEEAIQQFFQNF- 176

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR------VLREKRINQKRATNAGQKFSII 258
             +          ++ D+  +IY  + A           +  + + ++  T+  +    I
Sbjct: 177 SIEKRTELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQLDTDQLKYDKYI 236

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            +  +         V++KV S        +  +     +      Q+   +  E +    
Sbjct: 237 FVGFN---------VLNKVESDFFRKLKDAGKALFYWDYDIFYTQQIKKHEAGEFLKRNL 287

Query: 319 DSQCNPQQESWTSYFDSLPQESS-----ASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           +   N   ES+ + F    +         +  AR +   I  +    +  +  K++    
Sbjct: 288 EEFPNELPESFFNTFKESKKIRYISASTENAQARFLPGWIKAITNDHSQITVEKEK---- 343

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           ++ +VL  +    P++  + + +KN     V     F L        + A+     +   
Sbjct: 344 ENAVVLCNEALLLPVLHSIPQEVKN-----VNITMGFPLAQTPVYSFINAVMELQTNGYR 398

Query: 434 DL-------SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                    +   +LK P                     + +  + +      K    + 
Sbjct: 399 SDTGRFTYEAVSAILKHPY------TQQLSSHAGPLERELTQTNRFYPLPSELKQDDFLT 452

Query: 487 YIHELIHIAQFCSPHDF-----FTLILGAKKGRQQFISRFGNEV----IDVLDEFLNFTL 537
            +    +  +    +        + I   +       ++   E        ++   +   
Sbjct: 453 TLFTPRNGIKELCDYLIELIKNISTIYRKEGEYNDIFNQLYRESLFQSHTKINRLYSLIE 512

Query: 538 RNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             E      +L+ LI+++                 +++M V   + L+   + ++     
Sbjct: 513 SGELNIRTDTLKRLITKVLTSSNIPFH--GEPAIGMQVMGVLETRNLDFRNLIILSLNEG 570

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                      I  +L    G+     ++              +   + E   LLY    
Sbjct: 571 QLPKSGGDSSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAENITLLY---- 620

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
                       NTS++  +       M+         + +  L    +           
Sbjct: 621 ------------NTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEIRVEK 668

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                   E    I +  D       + SP   +      L        G    + + ++
Sbjct: 669 TP------EVLRRIYRAYDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAE 722

Query: 777 NQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSI-- 828
             +   G I H   Q+    +    +  +K  +      + KL     + +K  L  +  
Sbjct: 723 IDSALFGTIFHLSAQLAYTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAFKKELFKVSP 782

Query: 829 --------TRLLEN----PMMTTAMSCDSY----------SEVSVSGKINCPKKDIIIS- 865
                    +L+ +      +   +  D             +VS    I   +    +  
Sbjct: 783 EEKPEYNGIQLINSKVIVSYLKQLLRNDLQYTPFEMVAMEKKVSEEITIQTGQGPFTLRL 842

Query: 866 -GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEKILKDSYP 916
            G ID++   +  + I +YKT      P  IE +         +I Q  +Y  I+     
Sbjct: 843 GGTIDRMDAKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 902

Query: 917 NKSLVCLLIY 926
              +   L+Y
Sbjct: 903 LM-VAPALLY 911


>gi|325839423|ref|ZP_08166862.1| conserved domain protein [Turicibacter sp. HGF1]
 gi|325490543|gb|EGC92859.1| conserved domain protein [Turicibacter sp. HGF1]
          Length = 845

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/451 (13%), Positives = 137/451 (30%), Gaps = 43/451 (9%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
            ++ ++ + +++  Y+  +       L   L   Y+        +D  DL   +  LL+K
Sbjct: 381 EKEIYLSLDEQYCVYERKQR-----ELLYELAVRYQFFLDDEKKVDENDL---SRALLQK 432

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
                 I  K     ++++ DE+QD + IQ   +  L+ +             L   GD 
Sbjct: 433 ------IIKKEVNLFDYVIADEIQDLTEIQIYCLIRLSRN----------RNQLLFSGDI 476

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q+I       P      +  +  + +N    F   +L  ++RST +++ + +KV  +  
Sbjct: 477 NQTI------RPTYFHTGRVESIMKTSNTHLGFLKHQLVKNYRSTKEVVDLANKVVDLRI 530

Query: 283 NAQGLSEDSTTT------IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
              GL++ +         + H    +       + + + +   ++               
Sbjct: 531 KRLGLNKKNDYHEIAIRGLSHAVYYLQSTNPQNVIKLIETGL-NRHYVAIVVPDEAEKRN 589

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +  +    A      I   I  D I         ++    +L           +    L
Sbjct: 590 LERLTQVKGAVFTVEEIKG-IEKDYIICYNVMSKFKSLWETILNTDVMHQNQYRYYFNLL 648

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
                            +      L       L    +     +  S +   S++  +K 
Sbjct: 649 YVAI---TRARQHLCFVEEDMPPSLFEYLSDELLIFSEFDESALKLSQIS--SDNQFYKE 703

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
            T     E   + I ++    +   +H IK    L+   +         L+   +  +  
Sbjct: 704 ATLYERRELYEQAITEYELSKLEVAKHDIKRCQALMKNREGQHIEAGIELLKLKEFEQAA 763

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
              R G +V+  L   +      E+     L
Sbjct: 764 NCFRQGQDVLRYLQALVYQDCPFEKIQEELL 794


>gi|15671985|ref|NP_266159.1| subunit B of ATP-dependent exonuclease [Lactococcus lactis subsp.
           lactis Il1403]
 gi|81538648|sp|Q9CJJ0|ADDB_LACLA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|12722838|gb|AAK04101.1|AE006239_3 subunit B of ATP-dependent exonuclease [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 1099

 Score = 66.9 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 83/740 (11%), Positives = 188/740 (25%), Gaps = 128/740 (17%)

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
             +         +   S         +L +       S  N +  S  + +  + +  + 
Sbjct: 244 RFRSKFPVELRKMAFSSVNEVYNKLTKLLDLDSRFAISDQNIEINSADAKYFRIWEAENQ 303

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            +    +A  I   I                KD  VLV    D        + +   Y+I
Sbjct: 304 KVEIEGVAKEIRQKISQGAF----------FKDFTVLV---GDPAAYEITLKEIFELYEI 350

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--------FSEDDIF 454
                    ++ H  +    +L     +       V +LKS ++             + +
Sbjct: 351 PFFYAQEESMSQHPLVIFFESLLSIKKNNYGTDDVVNLLKSKVYTDVNLDEEVIDYFEYY 410

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIK-----------YIHELIHIAQFCSPHDF 503
               +    +   E   +     I     + +           ++             D 
Sbjct: 411 VQKYKISGRKKFTEAFNESEFSKIELVNQLRENLLGNDSPLQVFLGTNRQKTGKKWVSDL 470

Query: 504 FTLILGAKK--------GRQQFISRFGNEVID-----------VLDEFLNFTLRNEQNSY 544
              +L               +  S   +++ D           +L+EFL           
Sbjct: 471 --QVLLENGNVMANMNTYFSEAESENKHQMADKHEQVWQMLISILNEFLAV---FSDEKL 525

Query: 545 SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIK 604
            S++ L   L        R   AN + V I      +   +  ++ +      F      
Sbjct: 526 KSVEFLDILLAGLKNAKYRQIPANVDVVNIKDYELVEPKTNKYIYAIGLSQTNFPRIKKN 585

Query: 605 KMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
              +           + I Q+   N  +  L     +  Q     L+        + L++
Sbjct: 586 STLLSDEE------RLEINQTTDENQFIEQLNVVNYQKNQFTVLSLVNSA----KETLVL 635

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                 +NE+      +   +  S     +  +        +    +    +   +    
Sbjct: 636 SMPQIMANEQGEFSPVFQLFLNHSDEKILQKIQEVNLFESLEHIGNSRSVISMIGKIERE 695

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--------------------------- 757
             E   K               +K++ +   IL                           
Sbjct: 696 LVETEEKNDDKRVFWSSIFRILVKSNPDFQKILLDLAKDIDTVNLSQETLDQIYGDKLYA 755

Query: 758 NPSTIDTKGKTNLESLLSDNQTFN-----------RGLIIHKLLQVIFTLPEHKRKNFIT 806
           + S+ +       +  L                   G   H++ + +    E        
Sbjct: 756 SVSSFERFYNCEYQYFLETTLGLETFENIDINSKIVGNFFHEVFEKV-MQEEALSAENFD 814

Query: 807 SYCTKNAKLWPAK----------------EYKNLLLSITRLLE----NPMMTTAMSCDSY 846
              TK      +                   + ++     +L+       + T ++  S+
Sbjct: 815 EKLTKVLHDVDSNYSRYFTHDATARFTWTNLEEIVRQTATVLKETVSTDELKTLLTESSF 874

Query: 847 SEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLS 905
             +  S   N    DI + GRID++     +     +YK+  H  + ++        Q  
Sbjct: 875 G-LPKSELGNFSVDDIYLRGRIDRLDQLSSDYLGAIDYKSSAHSFK-LQDAYDGLSLQFM 932

Query: 906 IYEKILKDSYPNKSLVCLLI 925
            Y  ++K+++PN+ +   L 
Sbjct: 933 TYLDVIKEAFPNQKIWGALY 952


>gi|255282149|ref|ZP_05346704.1| ATP-dependent DNA helicase PcrA [Bryantella formatexigens DSM
           14469]
 gi|255267097|gb|EET60302.1| ATP-dependent DNA helicase PcrA [Bryantella formatexigens DSM
           14469]
          Length = 238

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 50/184 (27%), Gaps = 36/184 (19%)

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E     SL   + E+         +   N + V +MT+H+AKGLE P V+L      +F 
Sbjct: 10  ESTGEPSLSGFLEEVALVADID--SLDENESRVVLMTLHSAKGLEFPNVYLTGMEEGLFP 67

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                                                        EE  RL YVG+TRA 
Sbjct: 68  SHVGFDEDP---------------------------------DALEEERRLCYVGITRAM 94

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMV-YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             L +          +++       +        E  KK     +          W    
Sbjct: 95  KHLTLTCARMRMTRGETHMSAMSRFLREIPQELLETKKKTAAEETAGGTNGTKSAWKKPE 154

Query: 719 PENT 722
           P   
Sbjct: 155 PPAD 158


>gi|167041227|gb|ABZ05984.1| hypothetical protein ALOHA_HF4000001N02ctg1g23 [uncultured marine
           microorganism HF4000_001N02]
          Length = 471

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 74/247 (29%), Gaps = 57/247 (23%)

Query: 757 LNPSTIDTKGKTNLESLLSDNQ-------TFNRGLIIHKLLQVIFTLPEHKRKNFITSYC 809
           L+PS+     +   +  LS              G  +H  ++ I  L    R++    + 
Sbjct: 70  LSPSSWSRFEECPRKYWLSRQGLPRKASMPAAMGNAVHNSVEDICNLDISDREDDEVGWL 129

Query: 810 TKNAKLWPAKEYKNLLLSITRLLENPMMTT----------------AMSCDS-----YSE 848
              AK    + ++    +      +P                      S  +      SE
Sbjct: 130 PPTAKEILDRHWQIEKDNFLGTPRHPRWKNELITKAHDGLVGALNILFSKSTVGVQKLSE 189

Query: 849 VSV-----SGKINCPKKDIIIS------GRIDQIS--ISQQ----NIFIFEYKTHHHVPQ 891
           V+V        I    +  ++S      GR+D +   I +        + + KT      
Sbjct: 190 VTVGTWREVQTIVLANEGTLVSECGRLMGRLDLLVADIDENGESQGWIVADLKTGRPPSP 249

Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKS-LVCLLIYVSEPKVF------IIPQNKLNKAF 944
            ++        QL  Y  +LK + PN   +     Y +   +       +IP   +  A+
Sbjct: 250 SLDEKVSR---QLRFYRDLLKQNNPNHPTVTAEGWYSANQTIHVADGPSVIPAALV--AW 304

Query: 945 AEISTKI 951
             +   +
Sbjct: 305 EGMRPSL 311


>gi|295103245|emb|CBL00789.1| ATP-dependent nuclease, subunit B [Faecalibacterium prausnitzii
           SL3/3]
          Length = 1120

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 101/1021 (9%), Positives = 239/1021 (23%), Gaps = 156/1021 (15%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
           +   IY++L       V     + SL+            QTL  A +   +      L  
Sbjct: 43  TEARIYRELGDALSGMVESY-SFTSLAEHILAVEGGAAVQTLTDAGRAVLVRRALEELQD 101

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131
                    +                E + + +   +  +      +   S  A L    
Sbjct: 102 NVHYYYRHRRSAAF-------CQMAAETIDELKSAGLSGQQLQELARDCGSESAKLGELA 154

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT--- 188
            +   YE        +D  D +    D L+       +   + +    + IDE  DT   
Sbjct: 155 LIFQGYESLLAGTG-MDPADRLELAADRLEAALARDELPDFLRER--EVFIDEF-DTFNV 210

Query: 189 --SLIQWEVIRSL--TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH------GAEPKRVL 238
               +   ++ +L               P  L      KQ            GA+     
Sbjct: 211 PKKRLMGAMLAALPAVTVALCEDGAPMQPGDLELFSGAKQVAAQLRQLARKNGAQVAAPE 270

Query: 239 REKRINQKRATNAGQKFSIIELPLSF----RSTADILTVVDKVFSIPENAQGLSEDSTTT 294
             +R  + +    G       L         S  ++                 +      
Sbjct: 271 LLRRDLRHK-DAPGLDALTELLETGSCTPPESAPELRLFAAASREEEARCAAAAIRRLMR 329

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              R  +I  V       +   +++ +                   + ++ A       +
Sbjct: 330 QGVRCGKIAVVCRDISLYRAAVRYEFRMAEIPLYCDEPTTPEFSAPATAVRALLALLRGA 389

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
           +M    T+ +      +   ++  L              R            + R     
Sbjct: 390 DMTEQLTVLAKTGLCDLTEPEVCALENYAYTWSPNAAAWRAEFTK-------SPRGFGDA 442

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFA 474
            L  +D + L R   +++  ++ V  L+  +            +   E  +   Y     
Sbjct: 443 ELTEEDTLNLTRAENARKKLVTAVDTLRGKVR-----------SANAEQISRALYFCLKE 491

Query: 475 NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN 534
                +    ++ I     I         + +++       + +   G  V +  D F  
Sbjct: 492 LGAEGQQAAQVEDIRTARGIPAAEEAAREWNVVMQLLDEMARLLGSQGITVPEYEDLFGL 551

Query: 535 FTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               ++                             + V + +    +      VF++   
Sbjct: 552 LLRSSDLGHIP---------------------QTLDAVVLASAGKMRLDAPDYVFVLGLA 590

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
              F     +   +  +  D              N +V + +               Y  
Sbjct: 591 EGEFPCTPAESGLLTHADRDLLMAKQIDLPDCFENRVVREQV-------------CFYKA 637

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS---INKDEWIA 711
           +T  +  L +           +      + +  +    E +           +    W  
Sbjct: 638 LTAPAKGLWMSWPKGQGQTLCAALEPIVEALQPAAPQLELIDLAATPADGLDVLGGGWPL 697

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY---------ILNPSTI 762
            E              E ++       + +    P +   + P           ++PS +
Sbjct: 698 TERERASLTEALRAPGEGVQTPRGLALLQRMEQDPPRQVQDLPTLEALLGRRLHISPSQL 757

Query: 763 DTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITS-YC 809
           +                      ++      G ++H +LQ+ +   P           + 
Sbjct: 758 EKYYTCRYGYFLQYVLGLKPRRRAELSADQSGTLMHWVLQMALDPHPGEDNPCAGLRPFL 817

Query: 810 TKNAKLWPAKEYKNLLLSITRLL--ENPMMTTAMSC------------------------ 843
             +           +     R L  +       +S                         
Sbjct: 818 ELDDAAMADLAAALVDEYARRYLPEDTARFAYLLSRLKKSMTSLLCYLRDEQNQSQFKPV 877

Query: 844 -----DSYSEVSVSGKINCPKKDIIIS--GRIDQ---ISISQQNIFI--FEYKTHHHVPQ 891
                    E +V G++        +   G +D+           ++   +YKT      
Sbjct: 878 ACELKIGRGEDAVPGQVYRLSDGRTVQLVGTVDRADEWIEDDGTRWVRVVDYKTGSKKLD 937

Query: 892 EIEHIPYTHIA---QLSIYEKILKD----SYPNKSLVCLLIYVSEPKVFIIPQNKLNKAF 944
               +   +     Q+ +Y   L       +       +L  +++P    +P+ +  +A 
Sbjct: 938 ----LKEVYCGLDCQMLLYLFSLTRDAGGRFTGAQPAGVLYLLADPAPQTLPRGQAARAV 993

Query: 945 A 945
            
Sbjct: 994 E 994


>gi|291535311|emb|CBL08423.1| ATP-dependent nuclease, subunit B [Roseburia intestinalis M50/1]
          Length = 1174

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/553 (9%), Positives = 143/553 (25%), Gaps = 70/553 (12%)

Query: 439  CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
               +   F   +  +  +       E VYE  +        K   V    +EL  + +  
Sbjct: 465  RWSRPWTFVMPDGTLEDMARLNEIREAVYENFKPLLEAFRGKDNTVSTQTYELYSLIRRL 524

Query: 499  SPHDFFTL---ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                          A   + +  ++  +++  ++ + L+       +   +++E    L+
Sbjct: 525  DMEQLLKERGNFFEAHGNQAR--AKEYDQIYKIVMDLLDKVTSLLGDETMTIREYSDILD 582

Query: 556  QY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH-KHIKKMHIMPSLN 613
                          ++ V +  +   +     ++F V     V     +   +       
Sbjct: 583  AGFEAAKVGIIPPGNDTVTVGDIERTRLNHVKILFFVGVNDGVVPKAGNQGGIISQFERE 642

Query: 614  DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY---VGMTRASDQLIICKHS-- 668
                  + +         +     +L  +   E   + +       +A  +  +      
Sbjct: 643  KMAEYHLELAPGAREKVFIQKFYLYLNMTKPSERLYVTFCRVNSDGKALRRSYLIGTLLK 702

Query: 669  --NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                   ++ ++    +    +      + +       +++ W A        E    + 
Sbjct: 703  LFPQLAVEEPSEEETLEGALTAESALPFLMEGLTKPVEDEEAWTALLAWYLSDEGEREKV 762

Query: 727  EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLS 775
             +         K      +  K         + + ++                  E  L 
Sbjct: 763  MQLFDAAFGAHKDDAISKAVTKALYGNTLENSVTRLEQFAACAFAHYLSYGLRLKERELQ 822

Query: 776  DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-ITRLLEN 834
               + + G I H +L+      E     +          L        +  S I  + E+
Sbjct: 823  QFASVDMGNIYHDVLERFAKGIELSDYTWFDIPEKAQEALLSQSMEDAIAGSGIGDVFED 882

Query: 835  PMMTTAMSC--------------DSYS--------EVSVSG--KINC------PKKDIII 864
               +  +                            EVS S   +++         + + +
Sbjct: 883  ARNSYLLKRMEATAKRTIWALMLQVRKGKFVPSGFEVSFSRAERLDAVQFQLGEDEKMRL 942

Query: 865  SGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKILKDS---- 914
             GRID++    +   ++  I +YK+          + + +  QL +  Y     +     
Sbjct: 943  RGRIDRVDTYETDDKVYVKIIDYKSG---NTTFSLLNFYYGLQLQLVVYMNAALELTKKK 999

Query: 915  YPNKSLV-CLLIY 926
            Y  K      + Y
Sbjct: 1000 YKGKDTEPAGIFY 1012


>gi|224550143|gb|ACN54156.1| helicase [Wolbachia endosymbiont of Nasonia longicornis]
          Length = 115

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
           G+ +   +L  SFRST ++L +VD++F+     +     +   I+H   R    G +++W
Sbjct: 7   GRDWVSCQLEKSFRSTPEVLMLVDRIFNN---FREEISFNDNKIKHIPYRENDQGYIEIW 63

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
             +    + +    Q   T   D + ++    +LA+ I   I N +    I    
Sbjct: 64  PLLPGYEEEEQQALQIHLTQRKDYVVKD---RLLAQAIVQRIHNWLNEGRILVAK 115


>gi|313203010|ref|YP_004041667.1| hypothetical protein Palpr_0523 [Paludibacter propionicigenes WB4]
 gi|312442326|gb|ADQ78682.1| hypothetical protein Palpr_0523 [Paludibacter propionicigenes WB4]
          Length = 972

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/363 (11%), Positives = 98/363 (26%), Gaps = 59/363 (16%)

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
              + +++M V   +GL+   + +      VF  K      I  +L     +P       
Sbjct: 535 EPLDGLQVMGVLETRGLDFENLIITSFNEGVFPAKSSNNSFIPYNLRRGFELPTT----- 589

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                         +          Y  + RA     +        +     R  + + Y
Sbjct: 590 --------------EHQDAITAYNFYRLIHRAKRIYFLYDSRTEGMQTGEVSRFMHQLHY 635

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                 ++          +       + +    +       E     +    I   +  P
Sbjct: 636 HYDVKVQKKTVSFDIGFGSPQAIQIDKTAAVMEKLLRFTSSEKYSPALSASSINTYIDCP 695

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ--VIFTLPE----HK 800
                     L       +     + +    +    G + HK+++   +    +      
Sbjct: 696 ----------LQFYLTKVENVEQTDEVAETVEANMFGTLFHKVMENLYLPYKGQLMQSDD 745

Query: 801 RKNFITSYCTKNAKLWPAKEYKN----------------LLLSITR--LLENPMMTTAMS 842
             + I +    + ++  A   +                 L+ S+ R  +L+   +    +
Sbjct: 746 FDSLIKNTLKIDLEINSAFSREYFKKKNNAVVQLEGNNLLIASVLRKYILQVLKIDQKYA 805

Query: 843 CDSY--SEVSVS--GKINCPKKDIIISGRIDQISISQQNIFIFEYKT--HHHVPQEIEHI 896
              Y  SE   +    I   K  + I G ID+I   +  + I +YKT       + ++ +
Sbjct: 806 PFKYIGSEEKFTIKYPIQNTKTGVNIKGFIDRIDEKEGRLRILDYKTGSGKLDFRNLDEV 865

Query: 897 PYT 899
              
Sbjct: 866 FEH 868


>gi|256825225|ref|YP_003149185.1| RecB family exonuclease [Kytococcus sedentarius DSM 20547]
 gi|256688618|gb|ACV06420.1| RecB family exonuclease [Kytococcus sedentarius DSM 20547]
          Length = 313

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 68/235 (28%), Gaps = 57/235 (24%)

Query: 754 PYILNPSTIDTKGKTNL--------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
              L+PS      +  L              +    RG  +H +L+ +F LP H+R+   
Sbjct: 3   TAALSPSRAGDFMQCPLLYRFRVVDRLPEPPSAAAVRGTFVHSVLENVFDLPAHRRRPDD 62

Query: 806 TSYCTKNAKLWPAKEYKNLLL---------------------------------SITRLL 832
                +        E   +L                                   +   +
Sbjct: 63  AVGLMEQTWADLVAERPEVLEVLRADGSGATALDAVDGDADRASTGAAVQPTPEELAAWM 122

Query: 833 ENPM--MTTAMS-------CDSYSEVSVSGKIN--CPKKDIIISGRIDQISIS--QQNIF 879
            +    +    +         +  E+ V   ++    + ++++ G +D++ ++     + 
Sbjct: 123 ADAEALVRRWFTLEDPSVLEPAERELYVEVPVDRGGERGELVLRGYVDRLDVAPADGALR 182

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFI 934
           + +YKT        E      + Q+  Y   +         +  L+Y+ +  V  
Sbjct: 183 VVDYKTGRAPS---ELFQAKALFQMKFYALAIWRLRGRVPALLQLVYLKDGTVLR 234


>gi|225021452|ref|ZP_03710644.1| hypothetical protein CORMATOL_01472 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945834|gb|EEG27043.1| hypothetical protein CORMATOL_01472 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 248

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 46/164 (28%), Gaps = 37/164 (22%)

Query: 773 LLSDNQTFNRGLIIHKLLQ--VIFTLPEHKRKNFITSYCTKNAK--LWPAKEYKNLLL-S 827
                    RG ++H  L+   ++  PE      +       A          + +    
Sbjct: 16  PEPKTVAQVRGTLVHACLEDMHLWERPERTYPAVVKRLRPNWADMCGEDPSLLELVPEGE 75

Query: 828 ITRLL-------------ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS 874
           +   L             ENP    A++     E  V   +      + + G ID++ ++
Sbjct: 76  VYEFLVGCRSLLKGYFLMENPQGFDALA----CEKFVDAVLP---NGVPVRGFIDRVDVA 128

Query: 875 Q-QNIFIFEYKTHHHVPQEIEHIPYTH----IAQLSIYEKILKD 913
               + + +YKT              +      Q+  Y  +   
Sbjct: 129 PTGEVRVVDYKTGKKP-------LPRYSGQAKFQMRFYALVWWR 165


>gi|169831438|ref|YP_001717420.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
           audaxviator MP104C]
 gi|251764586|sp|B1I494|ADDB_DESAP RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|169638282|gb|ACA59788.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 1165

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 87/903 (9%), Positives = 229/903 (25%), Gaps = 150/903 (16%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
           +   +            S  A L   + L   +E        +D +D +      L +  
Sbjct: 138 EALEQAVRMLPGTAETDSLQAKLEDLRLLYTDFERELAGK-YIDPDDYLTLLAARLGESP 196

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL--------TEDFFVGKNTHSSPRTL 216
                          + +D     +  ++ V+ +L               ++       L
Sbjct: 197 TL---------RAAEVWVDGFAGFTPQEYAVLEALLKAAARVNVALCLDPRSGRREDLEL 247

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           F      Q          +   +     ++    AG           FR+   +  +  +
Sbjct: 248 F------QVTRDTRARLAELARKNGVELERPVELAGPPAR-------FRANPALAHLERE 294

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
            F  P        ++   +   S R    G  +   ++  +   +         +  D  
Sbjct: 295 FFRRPTKKFAGPPENLRLVAAASRRAEVEGAAREILRLSRERGWRWRDVSLVVRNLADYH 354

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR----KRKDTPLITFL 392
                A++ A                    +KR ++   ++ L+R       +      +
Sbjct: 355 E--LVATVFADY-----------GIPCFIDRKRPVRHHPLVELIRSALETVTENWTYDPV 401

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS--- 449
            R+LK D  + V   D  +L +++    +                  + +          
Sbjct: 402 FRYLKTDL-VPVSRGDVDLLENYVLAHGIKGAKWADPEDWHYRRSDALNRPVPNGTGAPA 460

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI-HELIHIAQFCSPHDFFTLIL 508
             D  +   ++                   +    ++ +   L  +              
Sbjct: 461 PSDRDRYLREKVNRIRRRAARHLLDFQRRVQAAGTVRELTAALYDLLSDLDVPGRIEEWS 520

Query: 509 GAKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
              +   +   +R   ++ D + E L+  +    +   + +E    L+     ++ A   
Sbjct: 521 REAETEGRLEAAREHRQLWDGVVELLDQVVETLGDEALTPEEYGRILDSGMDGLQLALIP 580

Query: 568 NH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
              ++V + ++  ++  +    F++     V   +H              G  ++  + +
Sbjct: 581 PALDQVLVGSLERSRNPDIRAAFVLGVSEGVLPGRH-------------GGTGLFTDRER 627

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
                    +    +    E   L+Y+ +TRA   L +               +    + 
Sbjct: 628 EVLLAAGLEVAPDTRRKVYEEQYLVYIALTRAGHYLWVSYPLADEEGGALAPSSVIPRLR 687

Query: 687 DSFHN---------------DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE--ET 729
           + F                    +  +                        P+       
Sbjct: 688 ELFPGLREETLALEPEGTAPGADLPYVTAPGRTLGFLVTRLRDWKSGVTVDPVWWSVFNW 747

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPY--------------ILNPSTIDTKGKTNL----- 770
                  ++    + + +  +  EP               +++ S ++            
Sbjct: 748 FAAHAGWRERCAPVLAGLFYENREPRLDPELTPELYGSRLVVSVSRLEEFRGCPFAHFAR 807

Query: 771 ------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEY 821
                 E  +      + GL  H  L+           +     ++ CT+ A     +  
Sbjct: 808 YALRLKERDVCRLAAPDIGLFFHAALKTFEDRLREAGMEWDALESADCTRLASAVVEELA 867

Query: 822 KNLLLSITRLLENPMMTTA--------------MSCDSYS----EVSVSGKINCP----- 858
             L   +   L +P +                 M+  +       V+V            
Sbjct: 868 PQLQSEVL--LSSPRLRFLTGKLERVVERTAGVMAAHARHSRFQPVAVEVAFGPGRDVPG 925

Query: 859 -------KKDIIISGRIDQISI--SQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                     + ++GRID++ +  +    +  + +YK        ++ + Y    QL +Y
Sbjct: 926 PAYPLPGGGSVELAGRIDRVDVAHTDNAAYLRVIDYKAG-PRSLALDDVYYGLNLQLLVY 984

Query: 908 EKI 910
            + 
Sbjct: 985 LEA 987


>gi|314914795|gb|EFS78626.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
          Length = 667

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 99/360 (27%), Gaps = 40/360 (11%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 341 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 400

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 401 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 458

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 459 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 508

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 509 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 546

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 547 RSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 603

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +               +  
Sbjct: 604 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQPEPSVMARYRPG 663


>gi|294631285|ref|ZP_06709845.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
 gi|292834618|gb|EFF92967.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
          Length = 308

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 77/259 (29%), Gaps = 39/259 (15%)

Query: 523 NEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAK 581
            E  + L   +N            +L +L++EL++   +           V + ++H+AK
Sbjct: 26  RERWESLAALVNLAQDFAAARPRATLADLVAELDERASSQHAPTVQG---VTLASLHSAK 82

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           GLE   VFLV     +                                     +      
Sbjct: 83  GLEWDAVFLVGVAEGMMP-----------------------------------IAYARTD 107

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              EE  RLLYVG+TRA ++L +      S   + N+R    +      +  R  +    
Sbjct: 108 EQIEEERRLLYVGVTRARERLHVSWSLARSPGGRPNRRPSRFLDGLRPGSAARTGRAAPA 167

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
            S   +       ++     +    +  +++     ++  +  +             PS 
Sbjct: 168 GSGGVERGFGTSGASAGRTGSVAPVQRRMQRTPARCRVCGRTLTDAGEMKLMRCDDCPSD 227

Query: 762 IDTKGKTNLESLLSDNQTF 780
           +D      L     +    
Sbjct: 228 MDEGLYERLREWRQEQARR 246


>gi|146185233|ref|XP_001031366.2| hypothetical protein TTHERM_00827200 [Tetrahymena thermophila]
 gi|146143237|gb|EAR83703.2| hypothetical protein TTHERM_00827200 [Tetrahymena thermophila
           SB210]
          Length = 1956

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 22/168 (13%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y++ K      DF D+I          ++       ++   +++ +DEVQD +  
Sbjct: 411 QICKEYQQWKYSKKYFDFNDVINYIIK-----NIIGGNYDSVNGYFHYLFVDEVQDLNCA 465

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS---FHGAEPK--RVLREKRINQK 246
              ++  LTE            + ++  GD  Q+I     F  A+ K       K  + +
Sbjct: 466 SLYLLCLLTE------------QNVYLGGDTAQTISQENCFKFADLKAIFSENNKDDHYQ 513

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                  + +  +L  +FRS   I+ + + +  +       S D    
Sbjct: 514 ANQVLTSELNETQLIQNFRSHGQIIELNNAIVELLRIFFPTSLDILNP 561


>gi|314936815|ref|ZP_07844162.1| ATP-dependent nuclease subunit B [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655434|gb|EFS19179.1| ATP-dependent nuclease subunit B [Staphylococcus hominis subsp.
           hominis C80]
          Length = 1162

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 90/770 (11%), Positives = 202/770 (26%), Gaps = 153/770 (19%)

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               +   I             +  + +  +          + +  +  L + S+     
Sbjct: 253 KEIANELHIPLNEHYFTTPYRFKNKDLLQLEQQFDALQVNPTQSHGYIDLLESSNMREEV 312

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             IA  I           + + +  + +DI +L R      L   +       Y I    
Sbjct: 313 NEIARRI---------IKDTRDKHFRYQDIAILYRDETYAYLFESIL----PQYDIPYNI 359

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--------------------- 445
           + +  +T H  ++ + +L   I S       + + K+ +                     
Sbjct: 360 DTKKSMTHHPIMEMIRSLLEVIQSNMGLSPMMRLFKTNILSNQFKNSSYLIDLLENFVIE 419

Query: 446 FNF-SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY--------IHELIHIAQ 496
                +  +            +     +        F+ V++         +     +  
Sbjct: 420 RGIYGKKWLDDKLFNIDNFTKMGRKAHQLTEEEKEAFEDVVRLKDDVVNKILRFEKAMLH 479

Query: 497 FCSPHDFFTLILGAKK----------GRQQFISRFGNEVIDVLDEF-------LNFTLRN 539
             +  D+ T      +           R +   +  +E  + +D+        L+  +  
Sbjct: 480 SKNVRDYATAFYETMEAFDLPKYLMAHRDELDLKGDHEKAEEIDQLWNGLIQILDDLVTV 539

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +    SL   +   +     ++        ++V I T+  AK      V++V     V 
Sbjct: 540 FEEEEMSLNRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHVYMVGMNDGVM 599

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                    I      D    +   +     +  SD+++        +   + Y+ MTRA
Sbjct: 600 PQPLSSSSLI-----TDEEKRLLEERGSVELSPTSDILQM-------DEAFVCYIAMTRA 647

Query: 659 SDQLI----ICKHSNTSNEKKSNQR------------------TWYDMVYDSFHNDERVK 696
            +Q+     +        EK                         Y +      +  ++ 
Sbjct: 648 CEQMTFSYSLMGMQGDEKEKSPFLNQIQALFSNLDIKNIHYLHHAYPLTLMEHPHQTKIH 707

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             +   S  ++E +A  W   +   +  E        +            +   ++E   
Sbjct: 708 LFEALKSWLEEEAVADTWLDAYKVISENEELNDSINYLSTALTYDNETIQLTPQLSEALY 767

Query: 757 -----LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLL---------- 790
                 + S  +                  E      ++F+ G I H  L          
Sbjct: 768 GTSINASVSRFEGYNDCPFQHYATYGLRLNERTKYQLESFDLGNIFHNALKYISDKVNGE 827

Query: 791 ------QVIFTLPEHKRKNFIT-------------SYCTKNAKLWPAKEYKNLLLSITRL 831
                 Q I  L E   ++ +               Y +K   +      K L       
Sbjct: 828 FSQLDNQKIHALTEEALQHVLPQVQFNLMDSNAYYRYVSKRIGVIVESTLKALRYQNENT 887

Query: 832 -LENPMMTTAMSCDSYSEVSVSGK--INCPKKDIIISGRIDQI--SISQQN--IFIFEYK 884
                   TA      +E  +     +      I I G+ID+I          + I +YK
Sbjct: 888 KFRPKRFETAFRKKPRTEEELIAHPLMTTQGIPIHIRGQIDRIDAYTKNNTSFVNIIDYK 947

Query: 885 -THHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLV-CLLIYVS 928
            ++H     ++ + Y    Q+  Y  I+    +    +  +    L+Y  
Sbjct: 948 SSNHSANLNLKKVYYGKQMQMMTYMDIVLQNSERLGLSSEVKPGGLLYFH 997


>gi|294338317|emb|CBJ94356.1| hypothetical phage protein [Campylobacter phage CPt10]
          Length = 230

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 32/186 (17%)

Query: 756 ILNPSTIDTKGKTNLE---------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
             + S IDT  K   +           +  N    +G  IH++L+   T           
Sbjct: 3   RYSFSKIDTYKKCPKQYYYRYIEKVPEIQKNPALKKGSDIHEILEFHNT----------- 51

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK---KDII 863
               +   +    +   +     R +++ +    +S  S  E  +    N         I
Sbjct: 52  ----EKYDIIFNSKDPEIQNIALRFIDSELGKEILSRKSLREFELFLDSNYEPCGKDTAI 107

Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCL 923
             G ID+I+ ++  + + +YKT  +     +        QL +Y   +        +   
Sbjct: 108 FVGYIDRINTTENGLELIDYKTGKYKDPSYQDF-----TQLILYSLYMFKRLKLNEIKIR 162

Query: 924 LIYVSE 929
            +YV  
Sbjct: 163 YVYVEH 168


>gi|305665913|ref|YP_003862200.1| hypothetical protein FB2170_06515 [Maribacter sp. HTCC2170]
 gi|88710688|gb|EAR02920.1| hypothetical protein FB2170_06515 [Maribacter sp. HTCC2170]
          Length = 916

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/468 (11%), Positives = 135/468 (28%), Gaps = 75/468 (16%)

Query: 499 SPHDFFTLILGAKKGRQ-QFISRFGNEVIDVLDEFLNFTLRNEQ--------NSYSSLQE 549
           SP+ F    L      + +  +      ++ L  F +   + +Q        +   SLQ 
Sbjct: 425 SPNQFIEHCLQIISILKTKLQASENKLALEELFRFYSVFNQMQQLIKEHDFISDLKSLQA 484

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L   +E                +++M +  ++ L+   V +      +          + 
Sbjct: 485 L--FVELLSMENLDFKGDPLEGLQLMGMLESRNLDFETVIITSVNEGIIPSGKSNNSFVP 542

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             L    G+P +      ++ + +                  Y  + RA +  ++     
Sbjct: 543 LDLKRAFGLPTFK----EKDAVYTYH---------------FYRLLQRAKNVYLVYNTEP 583

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
              E     R    ++ D+   D   + I +                    N   +  + 
Sbjct: 584 DVLEGGERSRLITQLLTDTNIKDNITEFIAVPE-------------IKVEINKENQITKD 630

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
              +   +++  K FSP          ++    +  G  +L  +         G IIH  
Sbjct: 631 ASLVNLIKELATKGFSPSSLSNYIRNPMDFYKQNLLGINDLMEVEETVAANTFGTIIHDT 690

Query: 790 LQVI--FTLP-----------EHKRKNFITSYCTKNAKLWPAKEYKNLLLS------ITR 830
           L+ +    +            +      +  +  K        + KNL+        +  
Sbjct: 691 LEDLYKPFIGRYLNKEVLKGMKANITALVKKHFAKTYSNLNTIQGKNLIAYNVIIKYVEN 750

Query: 831 LLENP----MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
            ++        +         ++ ++  +      + + G++D+I      + I +YK+ 
Sbjct: 751 FIDLEIKQCQDSQIKILGLEEKMEITMNMPELGFPVKLKGKLDRIDEKDGVLRILDYKSG 810

Query: 887 HHVPQEI---------EHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
             +  ++         E   ++   QL  Y  +  D  P   L   ++
Sbjct: 811 KVMLNQVEIFDWSLITEDFKFSKAFQLLCYALMFNDKAPLNQLEAGIV 858


>gi|145477529|ref|XP_001424787.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124391853|emb|CAK57389.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1579

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 22/169 (13%)

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
           +   + L       YE+ K    V D  DL+  T   L K +            I+++ +
Sbjct: 680 SQDIINLIYDYFLEYEKWKLSCGVFDLMDLVNYTICELDKGEFKTV-------PIHYLFV 732

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DEVQD       +   L E  +            +  GD  Q+I    G    R    K 
Sbjct: 733 DEVQDLPHAVITLFTRLIEQGY------------YFCGDTAQNIVKGVG---FRFQDLKN 777

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
           + +             +L ++FRS   IL + + + ++ E     + D 
Sbjct: 778 MFKHIDNPLLTDLEQFQLTINFRSHNSILQLANSIVNLIELFFPKAIDR 826


>gi|164424611|ref|XP_963674.2| hypothetical protein NCU06833 [Neurospora crassa OR74A]
 gi|157070587|gb|EAA34438.2| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 722

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            +L + ++  W         + I++DE QD + + + +I              S+   L 
Sbjct: 148 RVLDRNELPRWD----SAPFDIIVLDEFQDCTKLLFWLINCFILANDQKAGGQSAR--LV 201

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            +GDE+Q+IY F GA+ + +     +    +     K     L  SFR +   +  ++K 
Sbjct: 202 VLGDERQAIYGFRGADDRYLTSAPDLLGIVSPYPFIKAQ---LNRSFRLSDQSVQFINKT 258

Query: 278 FSIPENAQGLSEDSTTTIRHRSS 300
           F   E+    S+     I  R  
Sbjct: 259 FLSGESYITSSKPGPKPIILRCH 281


>gi|329936092|ref|ZP_08285891.1| putative ATP-dependent DNA helicase [Streptomyces griseoaurantiacus
           M045]
 gi|329304410|gb|EGG48289.1| putative ATP-dependent DNA helicase [Streptomyces griseoaurantiacus
           M045]
          Length = 590

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 33/216 (15%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
              R    +  ++   +  +   L      + +   +L            L        +
Sbjct: 158 AVHRLLARRKHEAETKASHIFGRLLEAGTISCEAARLL--------AAFWLNSPKERVLL 209

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           +  +      I++DE QD    + +++R L                +  VGD  QSIY F
Sbjct: 210 KALLRARFAEIIVDETQDCGREELDILRFL----------RDCKVRVVMVGDLDQSIYEF 259

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD-----KVFSIPENA 284
             A P  V         +          ++L  ++RS+  I          ++       
Sbjct: 260 RNATPTAVQEFAADLPVQ----------LQLEDNWRSSPAICAFNSGLRSGQLVERARGE 309

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             + +     I   +        + + EQ     D 
Sbjct: 310 HSIVQTPVHLIEFSALDQIVPAALDVAEQYKLAADD 345


>gi|320535503|ref|ZP_08035606.1| conserved domain protein [Treponema phagedenis F0421]
 gi|320147642|gb|EFW39155.1| conserved domain protein [Treponema phagedenis F0421]
          Length = 923

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/626 (11%), Positives = 183/626 (29%), Gaps = 51/626 (8%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
            +S+ +  + L    +     R     I  ++      S     V   K+++  +++   
Sbjct: 215 IDSFDAAQNPLISFENTRAEIRNTVLRIEQLLNEGVSISEIVVSVPNIKEMMPYLKREFA 274

Query: 386 TPLITFLTRFLKNDYKISV---VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
              IT   R   +                +  H + + + AL         D      L 
Sbjct: 275 LRSITADFRTGFSLADNQAGFLFSQITDAVDQHYSFESMKALVFNKHIPWADECGARALM 334

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQ---KFANCGISKFQHVIKYIHELIHIAQFCS 499
           S  +    + +     ++      +E  +   +       + +    +I   + +A+  +
Sbjct: 335 S--YGIKNNCVVSWQDEKRYKNVWFESFKISKEENPAEEDEKEAAKNWIIPFMQMAEKLT 392

Query: 500 PHDFFTLILGAK-KGRQQFISRFGNEVIDV---------LDEFLNFTLRNEQNSYSSLQE 549
               FT I  A    R +FI        D          L +        +    SS   
Sbjct: 393 SAKTFTEIQTAYFTFRDRFIVEDKFSAEDDMVMSRCLACLRQLSELEEEFKDCLPSSPYR 452

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
               + Q    I    +     + I     A G      F+++       +        +
Sbjct: 453 F--FITQLQNEIYVPQNEGLG-IAIFPYRVAAGAPFTYHFVLNCNQ----NSTCVIYKKL 505

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
           P L  D    + +  + +     +   K+           +    +  ++    +   S 
Sbjct: 506 PFLRQDKRYLLNVANTDASQAFFAAYAKNGNCFFSFAEQTISSFVIANSNFTQTVSPPSI 565

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
              +    +   Y     +F     ++K        ++    + +  +  ++      E 
Sbjct: 566 DETDSFLEELMMYQG-GKAFTQAYSIQKNGFEVWSGRNTEKGFSYLQNSFKHQIAALTER 624

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
           I  +  +        + ++N    P     S + T      E+ L + +    G++IH++
Sbjct: 625 IHAVQFKGSAVLVNQTGLRNFFFCPSYWFLSRVLTINDEQYEAELFNPRY--VGILIHEV 682

Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWPA--KEYKNLLLSITRLLENPMMTTAMSCDSYS 847
           L+ ++   + K   F ++      +      ++   +       L  P + +  S    +
Sbjct: 683 LEKLYQKIKAKDTKFCSANTATYKEWAKDIIQKTAKMRSEYQGPLATPFIESLYSRIFEA 742

Query: 848 -EVS---------------VSGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVP 890
            E +               +  +I      I   G ID++   ++ +  + +YKT    P
Sbjct: 743 VEYALSFDCEKLDGWLLSKIEERIEFESGGIFYEGIIDRVSVSAEGSSVLLDYKTGRRPP 802

Query: 891 Q----EIEHIPYTHIAQLSIYEKILK 912
                + E        Q+ +Y  +L+
Sbjct: 803 ASSYTDYEKNGELLDFQMPMYVHLLE 828


>gi|86143637|ref|ZP_01062013.1| hypothetical protein MED217_00050 [Leeuwenhoekiella blandensis
           MED217]
 gi|85829680|gb|EAQ48142.1| hypothetical protein MED217_00050 [Leeuwenhoekiella blandensis
           MED217]
          Length = 900

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 69/563 (12%), Positives = 160/563 (28%), Gaps = 96/563 (17%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                     +   N         D   L D             +L  E ++    + + 
Sbjct: 337 AQAAFFESWFQLQINKQGQGYYYKDVLSLLDQ-------QYAILLLDGEREILKRTITEK 389

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            L       I          + ++   Q  ++  +      I+ I E++   +     +F
Sbjct: 390 NLIYLEPQFIID-SNASDNAKLLFSSWQNSSSSALEYILESIQAIKEILFPQKNWLQLEF 448

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
               L                 +  L++   +      N   +L++   EL        +
Sbjct: 449 LHAFLELFT------------RLKNLNDTYTYL-----NDLRTLKQFYKELLSQETLDFK 491

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                   ++IM V  ++ L+   + +       F     +   I   L  +  +P +  
Sbjct: 492 GDPYQG--LQIMGVLESRVLDFKNIIITSLNEGTFPSGKSQNSFIPFDLKIEAKLPTYR- 548

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
               ++ I +                  +  + RA    +I  ++N +    S +++ + 
Sbjct: 549 ---EKDAIYAYH---------------FFRILQRAQKVNLI--YNNEAGGLNSGEKSRF- 587

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
           ++  +   + R +  + + S                  T  + E+T + +   +K     
Sbjct: 588 LLQLATDPNARYQYQEQSASAPVSLEPV----------TLKQVEKTPEIIEAIKKHAASG 637

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKR 801
           FSP          ++       G   LE++         G ++H+ L+ +    L     
Sbjct: 638 FSPSALSTYIRNPIDFYYKYVLGVEELEAVEDVIAHNTLGTVVHESLENLYKPYLNTILT 697

Query: 802 KNFITSYC-----------TKNAKLWPAKEYKNLL------LSITRLLENPMMTTAMSCD 844
           +  +                 +      K  KNL+        +   L         S  
Sbjct: 698 EEILQQILKQVNAEVQHQFELHYNALNIKTGKNLIIFNVAKQFVLNFLNLE----LQSVK 753

Query: 845 SYSEV---SVSGKINCPK-KDIIISGRIDQISISQQNIFIFEYKTHHHVPQ-----EIEH 895
           S  E+   ++  K       +I + G +D++ +  +   I +YKT           + E 
Sbjct: 754 SGKEIIIKALEAKYTIQLTPEIKLKGTVDRLDLENKVTRILDYKTGKVDRGQLVIKDWET 813

Query: 896 IPYTHIA-----QLSIYEKILKD 913
           +   +       Q+  Y  +L  
Sbjct: 814 LISDYKKQSKAFQVLCYALMLSK 836


>gi|154492504|ref|ZP_02032130.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC 43184]
 gi|154087729|gb|EDN86774.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC 43184]
          Length = 1619

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD +  ++ ++ +L           +    + AVGD+ Q+IYSF  +  + + +
Sbjct: 1173 LVIDEAQDMTEDEFALVEALIRK--------NEDLKVVAVGDDDQNIYSFRRSNSRYMRK 1224

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
                   R           +L ++FRS   ++   ++ +      
Sbjct: 1225 LVDEYGAR---------THDLLVNFRSKKCLVEFANRFWETIPER 1260


>gi|111224714|ref|YP_715508.1| putative DNA helicase II-like protein [Frankia alni ACN14a]
 gi|111152246|emb|CAJ63975.1| hypothetical protein; putative DNA helicase II homolog [Frankia
           alni ACN14a]
          Length = 817

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 80/300 (26%), Gaps = 72/300 (24%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
           F +  +     +              L  HYE  +    VLD  D+++   DL ++    
Sbjct: 496 FEQYAELARVGRSMPLQPTHRRAVWELYEHYERLRTARGVLDRGDVLLLARDLAREHAGD 555

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                      + +++DEVQD + +  + + +L  D   G         L  VGD +QS+
Sbjct: 556 E---------FDAVIVDEVQDLTCVGLQFLHALVGDRQDG---------LLVVGDGQQSV 597

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y                                L  ++R+   IL    +V +       
Sbjct: 598 YPGG-------------FTLAEAGVSVVGRSTVLARNYRNREAILRYAQQVVAG------ 638

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                                        S  D     ++       D    E     + 
Sbjct: 639 ----------------------------DSFDDLDVAGERGRRHVEIDRPGGEVDEVAVT 670

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
            + A  +S +     +      R ++  D+ +L              + L     I  V 
Sbjct: 671 GQ-AEQVSALRAD--LVDAHDGRGVRYGDMALLTSTNDAVASW----QRLLTRAGIPAVS 723


>gi|109392528|ref|YP_655657.1| gp78 [Mycobacterium phage Che12]
 gi|91980678|gb|ABE67397.1| gp78 [Mycobacterium phage Che12]
          Length = 297

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
           ++    +     I + G ID + +    + + +YKT +    +          QL +Y  
Sbjct: 167 AIELSFSIELDGIKVRGFIDAVVVVDGELRVRDYKTGNKPGDD---------FQLGVYAL 217

Query: 910 ILKDSYPNKSLVCLLIYVSEPK 931
            +   +          Y++  K
Sbjct: 218 AISMLFGIDPPKTGDYYMAGKK 239


>gi|119385519|ref|YP_916575.1| putative helicase/exonuclease [Paracoccus denitrificans PD1222]
 gi|119375286|gb|ABL70879.1| putative helicase/exonuclease [Paracoccus denitrificans PD1222]
          Length = 980

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/636 (10%), Positives = 156/636 (24%), Gaps = 61/636 (9%)

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           +++ S+      +++                  + L E      +++             
Sbjct: 273 NRLISLALRPAPVTDQWIEEGPRLGPLAPATERLTLIEAEQPGEEAEAVALIIREAVERG 332

Query: 335 SLPQESSASIL-ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                 +A  +  RR+   +        I  +   + +      + +R   D      + 
Sbjct: 333 QPVTLIAADRMLTRRVQSALDRW---GIIPDDSAGQPLPLTAPGLFLRHVADLFGAEMML 389

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMAL-GRFILSQEDDLSFVCMLKSPLFNFSEDD 452
             L    K  V              +    L      +         + +      +   
Sbjct: 390 DALLVLLKHPVTATGLGSDYRREHNRHTRDLELHLRRNGPAFPDGAALREWADRGDASSK 449

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
            + +         V     +       + + +     +L       +             
Sbjct: 450 PWALWLAGLLDRIVPLAQDRAPRPLADRLRDLRALAEDLAAGPGGDAGASELW------- 502

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
                    G     VLD        +  +     +      ++      R   A H  V
Sbjct: 503 -----AKASGGLARSVLDHL--AAHAHLGHDLRPGEFCDLLYDELQGQAVRQDVAAHPLV 555

Query: 573 RIMTVHTAK----GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
           R      A+    G  + +V L       +         +   +    G+ +   +    
Sbjct: 556 RFRGPREARTEAVGKAAGLVILSGLNEGGWPQALPPDPWLSRPMRLAAGLTLPERRVGLA 615

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            +     +                V +TRA            +  +    R    +V   
Sbjct: 616 AHDFQQAVGAGA------------VVLTRARR---------DAEAETIPSRWLNRLVNLL 654

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
               ++     L     +  +              L        +     + +   + ++
Sbjct: 655 GGLPDQQGPQALAEMRRRGRYWLDLAELQARPRIRLAPAPRPSPIPPPPALRELSVTEVR 714

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEH----- 799
             I +PY +    +   G   L+ L  +     RG ++H ++      +  LPE      
Sbjct: 715 TLIRDPYAVYARRV--LGLRALDPLRPEPDAAERGNMLHHIMDRFLRGLPDLPETPQAMK 772

Query: 800 KRKNFITSYCTKNAKLWPAKE---YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
            R   IT    +    WP+        +     RL+ +      ++  + + V   G+  
Sbjct: 773 ARLLAITDEVLEAEVPWPSARLFWRARIAGIADRLMADE--AERLARGTPTVVEEYGEQG 830

Query: 857 CPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQ 891
            P  D  +  R D++       + +++YK+      
Sbjct: 831 IPGLDFRLIARPDRLDRLHDGQVHVYDYKSGKPPTD 866


>gi|92115689|ref|YP_575418.1| hypothetical protein Nham_0057 [Nitrobacter hamburgensis X14]
 gi|91798583|gb|ABE60958.1| DNA helicase/exodeoxyribonuclease V, subunit B [Nitrobacter
           hamburgensis X14]
          Length = 1049

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/467 (10%), Positives = 105/467 (22%), Gaps = 55/467 (11%)

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           + ++   R     + + +      G S+      +  +        S  D        + 
Sbjct: 514 LHRLDESRALIAALRDALAPLEGDGASRSADFTAFAAQHREAIDVLSRDD--------QG 565

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
               F  + G  +    D+           +             +   I R   A    +
Sbjct: 566 VAAAFEGQHGLALAAAFDDL-RKAGERSGLTVKIADYPEVFETAFGDRIVRRPQATAASL 624

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           RI     A+  +   V L      V+         +   +  + G+ +   +     +  
Sbjct: 625 RIYGPLEARLTQCDRVILGGLNESVWPPAPPSDPWLSRPMRHELGLDLPERRIGLSAHDF 684

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           + L+                         +I+   +          R  + +   +    
Sbjct: 685 AQLLGADD---------------------VILSHAAKAGGSPAVASRFLHRLKAVAGPER 723

Query: 693 ERVKKIKLTNSIN-KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
                   T  +   +     E  T   +  P          +    I   L  P     
Sbjct: 724 WATALQAGTRYVQYAEAIDRPEQVTPVAQPEPKPPRAARPTRLSVTAIEDWLRDPYTIYA 783

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK 811
                L            LE++       +RG  IH  L                     
Sbjct: 784 KHILKL----------LPLEAVDMPLSAADRGSAIHNSLGDFTKQYPAALPENPADVLRA 833

Query: 812 NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII-------- 863
             +   A   +              +    +    S       I+   +  I        
Sbjct: 834 IGESRFAPLMQRPEARALWWPRFQRIAAWFAEWEQSRRPQLETIDAEIRGEISIPVASDR 893

Query: 864 ---ISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
              +S R D+I  +      I +YKT        + +      QL++
Sbjct: 894 TFHLSARADRIEHLGDGRFTILDYKTGSPPSS--KQVRLGLSPQLTL 938


>gi|42780211|ref|NP_977458.1| hypothetical protein BCE_1135 [Bacillus cereus ATCC 10987]
 gi|42736129|gb|AAS40066.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 269

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
           ++ ++ I H+L+DE QD S  Q+E ++ L                +  +GD  Q+I++ H
Sbjct: 25  FQTNRSIKHVLVDEAQDYSPFQFEFLKRLF-----------PAARMTVLGDFNQAIFA-H 72

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            +E         +     TN       I L  S+RST  I+     +    +N      D
Sbjct: 73  ASETVNFDTLTNLYGPDETNG------INLTRSYRSTKPIIEFTRALVPEGKNIHAFERD 126

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                  + S        +L + + ++  +    +Q +  +       ES A+  A    
Sbjct: 127 GEKPTVTKVSNDS-----ELHKHITAKV-AALQKEQHNTIAIICKSAAESVAAYEALNHI 180

Query: 351 YTIS 354
             I 
Sbjct: 181 ENIK 184


>gi|327441540|dbj|BAK17905.1| superfamily I DNA and RNA helicase [Solibacillus silvestris
           StLB046]
          Length = 786

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 73/203 (35%), Gaps = 27/203 (13%)

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
           ++ ++ I HILIDE QD S  Q+E ++ L                +  +GD  Q+I++  
Sbjct: 537 FQTNRSIKHILIDEAQDYSPFQFEFLKRLF-----------PSAKMTVLGDFNQAIFAHA 585

Query: 231 GAEPKRVLREKRINQKRATNAG-QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
                         Q      G ++  ++ +  S+RST  I+    ++ +  E       
Sbjct: 586 SGVV--------DFQVLNHLYGEEETEVVNMNRSYRSTKPIIEFTRRLIANGEKIIPFER 637

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                + ++          +L ++++S+   +   +     +      +ES  +  A   
Sbjct: 638 AGGLPVLNQVENH-----TELHQRIMSKIS-ELQSEGYGSIAVICKSAEESKTAFEALNK 691

Query: 350 AYTISNMIGTDTIFSNGKKRVIQ 372
              I  +I + T        VI 
Sbjct: 692 IDGIK-LIKSGTAEFEQGIVVIP 713


>gi|18376100|emb|CAD21162.1| conserved hypothetical protein [Neurospora crassa]
          Length = 776

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            +L + ++  W         + I++DE QD + + + +I              S+   L 
Sbjct: 148 RVLDRNELPRWD----SAPFDIIVLDEFQDCTKLLFWLINCFILANDQKAGGQSAR--LV 201

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            +GDE+Q+IY F GA+ + +     +    +     K     L  SFR +   +  ++K 
Sbjct: 202 VLGDERQAIYGFRGADDRYLTSAPDLLGIVSPYPFIKAQ---LNRSFRLSDQSVQFINKT 258

Query: 278 FSIPENAQGLSEDSTTTIRHRSS 300
           F   E+    S+     I  R  
Sbjct: 259 FLSGESYITSSKPGPKPIILRCH 281


>gi|197336573|ref|YP_002157369.1| putative DNA helicase [Vibrio fischeri MJ11]
 gi|197315276|gb|ACH64724.1| putative DNA helicase [Vibrio fischeri MJ11]
          Length = 529

 Score = 66.5 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 25/116 (21%)

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
           V    + K+     ++++DE QDT+ I  +++  LT                 AVGD+ Q
Sbjct: 202 VLKMAQNKLSLPYEYVMLDEAQDTAPIAQQLMHLLT------------NSKKVAVGDKHQ 249

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           SIY + GA+                         +L   +R    I  + + + + 
Sbjct: 250 SIYEWRGADNAM-------------AHLNFSKEGKLTTCYRFGQSIADLANDLLNH 292


>gi|311278011|ref|YP_003940242.1| hypothetical protein Entcl_0683 [Enterobacter cloacae SCF1]
 gi|308747206|gb|ADO46958.1| hypothetical protein Entcl_0683 [Enterobacter cloacae SCF1]
          Length = 625

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 76/533 (14%), Positives = 151/533 (28%), Gaps = 108/533 (20%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
              +L  +D++      ++   +   I  K       + +DE QDT       +R++   
Sbjct: 168 AKGILGHDDILKLVPACVEAHPLLRRIVAK---RFPFVFVDESQDTDPDVISALRTIA-- 222

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIY-SFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                   +    +   GD  Q IY S  GA P      +                I  P
Sbjct: 223 ------NDNPDMCIGFFGDPMQKIYMSGAGAIPLSDGWAE----------------ITKP 260

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            +FR    +L V++ +                       R    G   L +    +    
Sbjct: 261 ENFRCPTSVLGVINSI-----------------------RASGDG---LQQIRGRKTIVD 294

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              Q    T     LP     S     +   ++N    +   S+ ++  ++    LVLV 
Sbjct: 295 GVEQTVLGTVNLFILPSNVERSAYLTSVRRYLANETSDEQWLSDTREGDVRL---LVLVH 351

Query: 382 KRKDTPL-ITFLTRFLKNDYKISVVGN--DRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           +     L    L   L +   +S+     D         ++ ++ +        D    +
Sbjct: 352 RMAANRLGFPNLFSALTDKAPMSLSEGVNDGSAWPLRPFVQHILPIF-AAAQANDQFQIM 410

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
            ++++         +                  +     +++ Q  I  +  L+      
Sbjct: 411 SIMRNECPKLEPSRL----------------HGQAMVAVLNELQQGINGLLALLEDGSQA 454

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVL-DEFLNFTLRNEQNSYSSLQELISELEQY 557
           +  D    +      R   + R  +   + L DE +N       +     + + + L   
Sbjct: 455 TVRDILRHV------RDCELLRLDDRFDNHLSDEPVN-------DGNDDFENVQNYLRCN 501

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVV-FLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
              +         E    T H  KG +   V  ++D     FS     K      L+D+ 
Sbjct: 502 AHELWAYRRYLSEESPFATHHGVKGAQFERVLVVIDDEEARFSQYSYGKYFQYIPLSDND 561

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
              +                +  ++S  +   RL YV  +RA   L +     
Sbjct: 562 LANL----------------EEGRESVLDRTRRLFYVCCSRALKDLAVVIFVP 598


>gi|295084360|emb|CBK65883.1| RecB family exonuclease [Bacteroides xylanisolvens XB1A]
          Length = 959

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 101/850 (11%), Positives = 239/850 (28%), Gaps = 139/850 (16%)

Query: 148 DFEDL---IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
           DF+D+   +++ + L                     L+D+ +     Q E I+   ++F 
Sbjct: 105 DFDDVDKNMVDADKLFSNLQDLKN------------LMDDYEFLDKEQEEAIQQFFQNF- 151

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR------VLREKRINQKRATNAGQKFSII 258
             +          ++ D+  +IY  + A           +  + + ++  T+  +    I
Sbjct: 152 SIEKRTELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQLDTDQLKYDKYI 211

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            +  +         V++KV S        +  +     +      Q+   +  E +    
Sbjct: 212 FVGFN---------VLNKVESDFFRKLKDAGKALFYWDYDIFYTQQIKKHEAGEFLKRNL 262

Query: 319 DSQCNPQQESWTSYFDSLPQESS-----ASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           +   N   ES+ + F    +         +  AR +   I  +    +  +  K++    
Sbjct: 263 EEFPNELPESFFNTFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQITVEKEK---- 318

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           ++ +VL  +    P++  + + +KN     V     F L        + A+     +   
Sbjct: 319 ENAVVLCNEALLLPVLHSIPQEVKN-----VNITMGFPLAQTPVYSFINAVMELQTNGYH 373

Query: 434 DL-------SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                    +   +LK P                     + +  + +      K    + 
Sbjct: 374 SDTGRFTYEAVSAILKHPY------TQQLSSHAGPLERELTQTNRFYPLPSELKQDDFLT 427

Query: 487 YIHELIHIAQFCSPHDF-----FTLILGAKKGRQQFISRFGNEV----IDVLDEFLNFTL 537
            +    +  +    +        + I   +       ++   E        ++   +   
Sbjct: 428 TLFTPRNGIKELCDYLIELIKNISTIYRKEGEYNDIFNQLYRESLFQSHTKINRLYSLIE 487

Query: 538 RNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             E      +L+ LI+++                 +++M V   + L+   + ++     
Sbjct: 488 SGELNIRTDTLKRLITKVLTSSNIPFH--GEPAIGMQVMGVLETRNLDFRNLIILSLNEG 545

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                      I  +L    G+     ++              +   + E   LLY    
Sbjct: 546 QLPKSGGDSSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAENITLLY---- 595

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
                       NTS++  +       M+         + +  L    +           
Sbjct: 596 ------------NTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEIRVEK 643

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                   E    I +  D       + SP   +      L        G    + + ++
Sbjct: 644 TP------EVLRRIYRAYDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAE 697

Query: 777 NQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSI-- 828
             +   G I H   Q+    +    +  +K  +      + KL     + +K  L  +  
Sbjct: 698 IDSALFGTIFHLSAQLAYTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAFKKELFKVSP 757

Query: 829 --------TRLLEN----PMMTTAMSCDSY----------SEVSVSGKINCPKKDIIIS- 865
                    +L+ +      +   +  D             +VS    I   +    +  
Sbjct: 758 EEKPEYNGIQLINSKVIVSYLKQLLRNDLQYTPFEMVAMEKKVSEEITIQTGQGPFTLRL 817

Query: 866 -GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEKILKDSYP 916
            G ID++   +  + I +YKT      P  IE +         +I Q  +Y  I+     
Sbjct: 818 GGTIDRMDAKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 877

Query: 917 NKSLVCLLIY 926
              +   L+Y
Sbjct: 878 LM-VAPALLY 886


>gi|90420585|ref|ZP_01228492.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335313|gb|EAS49066.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1043

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/671 (7%), Positives = 146/671 (21%), Gaps = 57/671 (8%)

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
           F+       +S         ++         +    +    +     ++           
Sbjct: 268 FAAISREGAISAPGHPQYGLKTILARFALPPEAVTHLAPNEEPALTAREAFVADALRPAE 327

Query: 338 QESSASILARRIAYT-------ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
                   AR            +      +   +          D             + 
Sbjct: 328 TTHRWRETARDHGAEALDGLALVEANDEREEALAIACAMRAALADPDATTALITPDRNLA 387

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
                    + I+   +    L        L  L    L   D ++ + +LK PL     
Sbjct: 388 RRVVSELARFGIAANDSGGRPLAATPPGTLLTTLAAVALQPGDPIALIALLKHPLTRLGM 447

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
                   +      +            ++   ++     ++  A          ++  A
Sbjct: 448 P--AAEARRAARAIEMLALRGSVGIPDGARLGAIVAARRRMLETATHMP--RPVRILPEA 503

Query: 511 KKGRQQFISRFGNEVIDVLDEFLN----FTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           ++   Q ++      ++ L    +                L+ + ++ ++    +    +
Sbjct: 504 ERELAQIMADRLEAALEPLSALRDGTEREIAAYATALTRCLEAVAADADEDASEVYAEEA 563

Query: 567 AN------HNEVRI-MTVHTAKGLESPVVFLV-----------DTGSQVFSHKHIKKMHI 608
                    + VR   T       E   V                 ++ F    ++    
Sbjct: 564 GRAMVEFLSDIVRAPDTGFGFASRELGDVIDALIAGVTVKPRGGLSARAFVWGTLEARLQ 623

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG----MTRASDQLII 664
              +    G+        +++      +   + +      R+        M   + +++I
Sbjct: 624 SVDMAILGGLNEGTWPGGTKSGAFLSRLMRREIALDPPERRIGLAAHDFWMAMGARKVVI 683

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
            +            R    +                  +  +            P +   
Sbjct: 684 TRSRRAGGAPAIASRWLQRL-----TTLAGEDGTARLRAAGQTYLDHARRLDDAPADAGQ 738

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
           +      +           +S    +                   L  L+ D     RG 
Sbjct: 739 DIRAARPEPRPPLDRRPTSYSITDVETLIRDPYAIHARKIMNLEPLPELMRDPHAAERGN 798

Query: 785 IIHKLLQVIFTLPEH-KRKNFITSYCTKNAKLWPAKEYKNLLLSIT---------RLLEN 834
           + H +L             +          + +  +     + ++            +  
Sbjct: 799 LFHDILGRFVQRGHDPDAGDAEAEILAIARERFDEEMLPPDIEAVWWPRAESLCANFIAW 858

Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQEI 893
                      ++E  + G  +       + GR D++  ++  +  I ++KT       +
Sbjct: 859 ERERGPRVATRHAE--IGGAYDFTDLATTLRGRADRVDVMADGSTEILDFKTGTTP--SV 914

Query: 894 EHIPYTHIAQL 904
                    QL
Sbjct: 915 SQARALLAPQL 925


>gi|119486317|ref|ZP_01620376.1| hypothetical protein L8106_16724 [Lyngbya sp. PCC 8106]
 gi|119456530|gb|EAW37660.1| hypothetical protein L8106_16724 [Lyngbya sp. PCC 8106]
          Length = 194

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 51/156 (32%), Gaps = 8/156 (5%)

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA-M 841
           G  +H  L  I+    +        +     +    +    L      +LE+       +
Sbjct: 40  GKALHAALARIYGDWNYTEPKPSLDWIRFCWQRVNHELTPELSTQGLEILESYYYQYIAI 99

Query: 842 SCDSYSEVSVSGKINCPKK----DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                  V+V GKI         +  ISGR D++      + + +YK+   +       P
Sbjct: 100 LPALRKPVAVEGKIQARLNLCNIEFKISGRYDRLDWRDDGLELIDYKSSRKIRDFE---P 156

Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
                QL +Y   L+  Y        LIY+   ++ 
Sbjct: 157 DEIDLQLGLYYLALEQRYKKSLQQMSLIYLQRARIH 192


>gi|167836130|ref|ZP_02463013.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           MSMB43]
          Length = 240

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/179 (10%), Positives = 46/179 (25%), Gaps = 40/179 (22%)

Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
           +  +    G  +H+LL++                  +          + L   +TRL+ +
Sbjct: 1   AFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVAD 60

Query: 835 P---------MMTTAMSCDSYSEVSVSGKINCPKKDII---------------------- 863
                      +         +E++          + +                      
Sbjct: 61  LAATELVPGMRLAALDPARRLTEMAFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGF 120

Query: 864 ISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
           + G ID I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 121 VKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGEQALDAAMAHHAYHLQALLYTVALHR 179


>gi|302867411|ref|YP_003836048.1| hypothetical protein Micau_2940 [Micromonospora aurantiaca ATCC
           27029]
 gi|302570270|gb|ADL46472.1| hypothetical protein Micau_2940 [Micromonospora aurantiaca ATCC
           27029]
          Length = 300

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 63/213 (29%), Gaps = 30/213 (14%)

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF--------NRGLIIHKLLQVIFTL 796
           +     +     L+PS         L                   RG ++H +L+ +F L
Sbjct: 9   TAAPAPVTVRASLSPSRAADFKTCPLLYRFRSIDRLPERPTVEQARGTLVHAVLERLFDL 68

Query: 797 PEH---------------KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
           P                  R                A   +  L S T LL+        
Sbjct: 69  PAAARTPESAGDLVVPQWDRLVTEEPELATLFADGDAVGPQEFLRSATALLD--GYFAVE 126

Query: 842 SCDSYSEVSVSGKIN-CPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYT 899
                        I+     +++I G +D++ ++      + +YKT     +  E     
Sbjct: 127 DPRRLEPAEREALISAVVDDELLIRGYLDRLDVAPDGALRVVDYKTGGAPREAFEARA-- 184

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            + QL  Y  +L  +      V  L+Y+ + +V
Sbjct: 185 -LFQLKFYALVLWRTRGVVPRVLRLLYLKDAEV 216


>gi|254563797|ref|YP_003070892.1| hypothetical protein METDI5474 [Methylobacterium extorquens DM4]
 gi|254271075|emb|CAX27082.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 1047

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/460 (11%), Positives = 117/460 (25%), Gaps = 54/460 (11%)

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-- 516
           QR+ TE V    ++         + ++  +   +   +     +   L+  A   R+   
Sbjct: 498 QRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDAFRTDLQPEIGNLVALAAGHREACE 557

Query: 517 ---------FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---EQYPPTIKRA 564
                          +  +D LD   +     EQ          +          T+  A
Sbjct: 558 RMMGGAEEGDADETDDPSLDTLDGLFDDLESAEQEELPGRFSDYAAFFTALARDRTVACA 617

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             + H  +RI+    A+ L    + L      V+  +      +   +  D G+     +
Sbjct: 618 QRSAHPRLRILGPLEARLLSVDRIVLGGLDETVWPVRQTTDAFLSRPMRGDVGLSPPERR 677

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                +     +                  +TRA+ +           E      + +  
Sbjct: 678 IGQAAHDFVQGLGTHDA------------VVTRAAKR-----------EGSPTVPSRFLQ 714

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
              +F  D             +      +     P                +  +  +  
Sbjct: 715 RLRAFGGDAVWADAIARGQRLRGLAARLDRGQEAPPPRLKR-----PAPKPDPALFPERL 769

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHK 800
           S  + +       +       G   LE +        RG +IHK+L    Q         
Sbjct: 770 SVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSQAHPGALPAD 829

Query: 801 RKNFITSY-------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
            +  + +                 A+ +          LE            ++E S   
Sbjct: 830 AETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLHTIHAERSGKV 889

Query: 854 KINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQE 892
            I   ++   +S R D+I   +  +  I ++KT       
Sbjct: 890 TIPLGERTFTLSARADRIEVRADGSYCIVDFKTGTPPSNR 929


>gi|168186664|ref|ZP_02621299.1| superfamily I DNA helicase [Clostridium botulinum C str. Eklund]
 gi|169295270|gb|EDS77403.1| superfamily I DNA helicase [Clostridium botulinum C str. Eklund]
          Length = 759

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 27/142 (19%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           KKN ++D  DL                  Y  +++  H +IDE QD S +Q EVI+  T 
Sbjct: 502 KKNNIIDSYDLAALMY--------LKIKLYGTNKKFKHTVIDEAQDYSFLQMEVIKEFTL 553

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +            ++  VGD  Q IY + G   K   +              + S + L 
Sbjct: 554 N-----------NSMTIVGDIGQGIYYYKG--IKNWEKVITDI------FKNEVSYVPLT 594

Query: 262 LSFRSTADILTVVDKVFSIPEN 283
            S+RST +I+ V +KV    +N
Sbjct: 595 QSYRSTIEIIEVANKVLEKQDN 616


>gi|308175724|ref|YP_003922429.1| DNA helicase II [Bacillus amyloliquefaciens DSM 7]
 gi|307608588|emb|CBI44959.1| DNA helicase II [Bacillus amyloliquefaciens DSM 7]
          Length = 517

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 66/179 (36%), Gaps = 31/179 (17%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              L  + L+I    + +K      I+ ++ Q+   I IDE QD++    ++        
Sbjct: 147 KGGLSHDSLLIFAEKVFEKFP---KIKKRLTQKYQLIFIDEYQDSAPSVLKMFYK----- 198

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                  ++   L+ +GD+ Q IY             ++  +            I+L  +
Sbjct: 199 ----AGLNTSSKLYFLGDKMQQIYK------NYDGSFEKELKTLNNE-------IKLDTN 241

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            RS  DI+++++ +               ++ ++R+++      V L + +  +   + 
Sbjct: 242 HRSIPDIVSILNNI------YNDKEFKQISSDKNRANKPDHPPRVVLCDNIQKRIKREQ 294


>gi|312880760|ref|ZP_07740560.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
 gi|310784051|gb|EFQ24449.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
          Length = 976

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/563 (8%), Positives = 137/563 (24%), Gaps = 65/563 (11%)

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKI 456
              Y I  V      + +    +          S       + +L  P    +     + 
Sbjct: 320 LERYGIPHVLRGGGSVGETDLGRLPRLCADAAGSGWPTERTLRLLSLPCLGGASFPAAQA 379

Query: 457 CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ 516
                  E  +    K     + +F+ +  +  +L               ++       +
Sbjct: 380 RGTAPSGEEEWTAFLKGFPPFLDRFRRLRGFARDLQGGGTPPKLLRLLRDLVSRDTPWTR 439

Query: 517 FISRF---GNEVIDVLDEFLNFTLRNEQN----------------SYSSLQELISELEQY 557
            ++     G E    +    + T   ++                 +  S  + ++ LE +
Sbjct: 440 ALADLAGEGAERDGAVHRLASATAELDRKILSLEEATPPLGEAAQNPLSGGDAVAFLETW 499

Query: 558 PPTIKRAHSAN-HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               + + +      + +         +     L    +  +     +   +        
Sbjct: 500 AEEARTSQAQPLRGALTVYPGSPPVLADHRWFVLTGATAPAWPGALKESALLADGDRHSL 559

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                      R ++   ++  ++   +  + RL+  G     +  ++ +     ++ + 
Sbjct: 560 NGLEAETLGLERTHL--PVLSEVRVQREALFRRLVLTG----REGCLLTRPL-QDDQGRP 612

Query: 677 NQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
              T ++       + E   + +  + +       +E +     +  L R        + 
Sbjct: 613 LPPTPFEAPLVDQLSQEEPPRRRPLSQLIPLAGPLFEDAEGPLPSRRLLRGVRGNAPQEG 672

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
           +  P+   +    D               G     +   D      G  +H+L Q  +  
Sbjct: 673 RGEPRTRGTFSGLDRFAGCPFAFWCEQELGLAPFPTGRFDP--ARVGNALHELWQRAWDP 730

Query: 797 PEHKR----KNFITSYCTKNAKLWPAKEYK------------NLLLSITRL-----LENP 835
              +R    +        +  +       +             L     RL      +  
Sbjct: 731 QSPQRAQGLEAAAVRLFEEVFRDPDRGYRELLCDPALARHALRLREQARRLGAVQDAQEE 790

Query: 836 MMTTAMSC-DSYSEVSVSGKINCPKKDIIISGRIDQ--ISISQQN--IFIFEYKTHHHVP 890
            +           E   + +       +   GR D+  +  +       + +YK      
Sbjct: 791 RLQALFPRGGVLRE---TLEPQAVLGSVSFRGRCDRADLWETPAGTVAVLLDYKLGSSKR 847

Query: 891 QEIEHIPYTHIAQLSIYEKILKD 913
            +          QL  Y   L +
Sbjct: 848 YQT-------HLQLPAYVAALTE 863


>gi|77410684|ref|ZP_00787043.1| exonuclease RexB [Streptococcus agalactiae CJB111]
 gi|77163220|gb|EAO74172.1| exonuclease RexB [Streptococcus agalactiae CJB111]
          Length = 808

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 69/661 (10%), Positives = 185/661 (27%), Gaps = 111/661 (16%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +       +A  I   +              + KDILVL+    D          + 
Sbjct: 31  ECINQKDEVEHVARAIRQKLYQG----------YRYKDILVLL---GDVDSYKLQLSKIF 77

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKI 456
             Y I         +  H  +  + +L R    +      + + K+ ++   S+DD+   
Sbjct: 78  EQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYF 137

Query: 457 CTQ------RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI--- 507
                    +   +   +++       + +   + + +   +         D    +   
Sbjct: 138 EAYISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDGIKTLNQF 197

Query: 508 --LGAKKGRQQFISRFGNEVIDVLDE--------FLNFTLRNEQNSYSSLQELISELEQY 557
                + G    +SR   ++ +   E        F +   + +         L   L   
Sbjct: 198 MFFLTQVGLSDNLSRLVGQMSENEQEKHQEVWKTFTDILEQFQTIFGQEKLNLDEFLSLL 257

Query: 558 PPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              + +A      A  + V + +    +   +  V+ +      F      K  I     
Sbjct: 258 NSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS---- 313

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                   I  +   +     + +   K        L          +L++      +  
Sbjct: 314 --DIERQLINDANDTDGHFDIMTQENLKKNHFAALSLFNAA----KQELVLTIPQLLNES 367

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           +        ++       + + ++     + N   + A          + +++E T ++ 
Sbjct: 368 EDQMSPYLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQ 427

Query: 734 MDEQKIPKKLFSPI--------------------------KNDINEPYILNPSTIDTKGK 767
                  + L   +                          +   ++P  L+ S + T   
Sbjct: 428 TFWSVAVRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYN 487

Query: 768 TNLESLLSDNQTFN-----------RGLIIHKLLQVI--------------FTLPEHKRK 802
              +  L                   G  +H++ +++                + +  ++
Sbjct: 488 NQYKYFLQYVLGLEEQDSIHPDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQE 547

Query: 803 NFITSYCTKNAK-LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
           +   S  +++A+  +  +  +++  +   +L      T  S +   E+ +   I      
Sbjct: 548 DVFKSLYSEDAESRYSLEILEDIARATATILRQDSQMTVESEEERFELMIDNTIK----- 602

Query: 862 IIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
             I+G ID+I   S  ++ + +YK+      +I+        QL  Y   +     +K +
Sbjct: 603 --INGIIDRIDRLSDGSLGVVDYKSSAQKF-DIQKFYNGLSPQLVTYIDAISR---DKEV 656

Query: 921 V 921
            
Sbjct: 657 E 657


>gi|317127867|ref|YP_004094149.1| LexA repressor [Bacillus cellulosilyticus DSM 2522]
 gi|315472815|gb|ADU29418.1| LexA repressor [Bacillus cellulosilyticus DSM 2522]
          Length = 808

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 25/176 (14%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
           D   +      T +              L   +    + N  + F+ + +          
Sbjct: 172 DRIGRATGGSGTPQKLTKNSELRAAIFELMEIFNALLENNGYITFKKMNLLALQ------ 225

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
                +     +  HI+IDE QD + +Q E ++ +  +            ++  V D  Q
Sbjct: 226 ---EAQQMNHGKYTHIIIDESQDLTKVQLEFLKCIYSE--------KRHSSIMFVADNTQ 274

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           SIYS             +                 L  ++R+T +I T    +   
Sbjct: 275 SIYS--------QSWLGKGRPYTTIGYDMSGKSRMLTKNYRTTTEISTAAYGLIEH 322



 Score = 51.1 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 31/108 (28%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
              + N+V+++T+H+ KGLE  V+FL+D    V  +  +  +                  
Sbjct: 408 PDFDSNKVKLVTMHSIKGLEFKVIFLIDLNEGVIPNDSLYDLDD---------------- 451

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                          + +   E  +LLYVGMTRA+D L +      S 
Sbjct: 452 ---------------EATLDSEERKLLYVGMTRANDLLYMSSVRKPSK 484


>gi|325066908|ref|ZP_08125581.1| UvrD/REP helicase [Actinomyces oris K20]
          Length = 366

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 75/276 (27%), Gaps = 41/276 (14%)

Query: 507 ILGAKKGRQQFISRFG--NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
           +L  +   ++  +  G   E  D L+  +       Q   + L    +EL +        
Sbjct: 110 VLAREGWSEEPPAPRGAVRERWDALNALVALADEMAQTRGADLDAFHTELRERADAQNAP 169

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  V + ++H AKGLE   V L      +                           
Sbjct: 170 TVEG---VTLSSLHAAKGLEWDAVILAGVCEGLLP------------------------- 201

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                     +     ++  EE  RLLYVG+TRA + L+I      +   ++ ++    +
Sbjct: 202 ----------ISLAEGQAAIEEERRLLYVGVTRAREHLVISYARARNAGGRAARKPSRFL 251

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
                  D      +     +  E      +     N P       ++L   +    K  
Sbjct: 252 DGLWPTGDGPKDASRRQGRQSAKERSRQSAADFEANNDP-RTIALFEELRAWRSQVAKER 310

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
                 +     L    +         SL+      
Sbjct: 311 GKPAFTVFADATLRDIAVVKPTSLPQLSLIRGVGAT 346


>gi|56964349|ref|YP_176080.1| hypothetical protein ABC2584 [Bacillus clausii KSM-K16]
 gi|56910592|dbj|BAD65119.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 900

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/584 (10%), Positives = 142/584 (24%), Gaps = 75/584 (12%)

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM-ALGRFILS 430
              +I VL   + D                + +  ++R  L D      +  AL   + S
Sbjct: 243 PLSNIAVLF-TKSDAR---AAFMAKAKQEGLPIAASNRSYLADTPFYLWVKEALLTPLPS 298

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQ--RHETETVYEYIQKFANCGISKFQHVIKYI 488
           +E  L  V  L + L   +     +              E        G S         
Sbjct: 299 KEARLGAVDSLFAVL-GITGRRCLRAKQALYAGYGIGDSEVDFFLNQIGKSPLAEGNTIA 357

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
            +   +    +  +  T I  A   +Q  ++  G                 E       Q
Sbjct: 358 EKAALLVDMLTKMEERTDIPYAPTVKQALLALDGIS--------YAKVETTEDGFRQWFQ 409

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                L      +          + +++       +   V++       F H +    + 
Sbjct: 410 TFAQTL------VIGEEPIPKEGISVLSWADVAAFQGSTVYVAGLALGTFPHPYSLLGYF 463

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             S   +         S++R+       + +           +Y           +C   
Sbjct: 464 QESDLTEINKRGVPLTSRTRSVQALQFQQLINSGMD------VYAS--------YVCGLD 509

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
             S    S     + +V    + +     I   +  +   +                 +E
Sbjct: 510 RDSPALPSPFLLDFQLVGFWNYQNRLNNGIGTYSRKDGTAYRGELDHFQKRLQHLQLGQE 569

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
            +      ++  K   +    +               G                G +IH+
Sbjct: 570 WLSDAQQAKEKAKPAVAVTAFEAYARCPFRYGLEWLLGIKPPAGQNEGLPANKIGTLIHQ 629

Query: 789 LLQVI--------------------FTLPEHKRKNFITSY---------------CTKNA 813
            ++ +                      +P      +   +                 +  
Sbjct: 630 CIETLYRHKLNVIGKPFSTLSEAEKDEVPYWLESEWRRRFNEDIVPFVPYMNRFELEQEE 689

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK-INCPKKDIIISGRIDQIS 872
             W  K          R  +   +  A       EV +  +        + ++G+ID++ 
Sbjct: 690 TWWANKLRLWWEAERARFWDRKELADAYIEGL--EVPIVLEDFPLGTTKLKVTGKIDRVD 747

Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
           ++     +++YKT      ++E   +    QL +Y  I+    P
Sbjct: 748 VANGEKVLYDYKTGK-AALKLEEASHGTKLQLPMYSYIIGKQSP 790


>gi|296117889|ref|ZP_06836472.1| RecB family exonuclease [Corynebacterium ammoniagenes DSM 20306]
 gi|295969120|gb|EFG82362.1| RecB family exonuclease [Corynebacterium ammoniagenes DSM 20306]
          Length = 249

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 49/167 (29%), Gaps = 15/167 (8%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRK-NFITSYCTKNAKL--WPAKEYKNLL--LS 827
                    +G ++H  L+    LP  +R       +     +       E   L+    
Sbjct: 12  PEPKTIAQVKGTLVHAALEKTHELPRAERTYPRAVKFLKPEWEKMCADDAELVELVPHDQ 71

Query: 828 ITRLLENPM--MTTAMS---CDSYSEVSVSGKINCPKKDII-ISGRIDQISISQ-QNIFI 880
               L      +           +   +V   ++    + + + G ID++  +    + +
Sbjct: 72  TLDFLIEARDLVKGYFQMENPQGFDAKAVEMYVDTVLPNQVPVRGFIDRVDEAPTGEVRV 131

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            +YKT      +  H       Q+  Y  +    +        L+Y+
Sbjct: 132 VDYKTGKKPRPQYAHDA---QFQMRFYALVYWRIHGVIPAQLRLMYL 175


>gi|67920669|ref|ZP_00514189.1| UvrD/REP helicase [Crocosphaera watsonii WH 8501]
 gi|67858153|gb|EAM53392.1| UvrD/REP helicase [Crocosphaera watsonii WH 8501]
          Length = 715

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 89/311 (28%), Gaps = 47/311 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y    +     + ED + +   LLK +                I++DE QD S  
Sbjct: 416 PVFEEYRSLLQHKGWKEIEDALRDVCSLLKNKPGITL-------PFRSIIVDEAQDMSEG 468

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            ++++R++         +++    LF VGD  Q IY                        
Sbjct: 469 VFQLLRTIVV-------SNNQGNDLFIVGDPHQRIYG-------------HKVVLSHCGI 508

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
             +    +L +++R+T  I      +           +           R    GTV   
Sbjct: 509 EIRGRSHKLRINYRTTEQIRKWATAMLKDIP----FDDLDGKLDNLNDYRSLLQGTV--- 561

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
             +      +       +     S  +  S + L  R    I + +          +  I
Sbjct: 562 PNIQGFSSFEDEINFLIYKLKTISESEPLSNTCLVLRTNQLIKHYL------HALNEHNI 615

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
           QA+ I       ++ P +   T          V G     +       DL+ L   +   
Sbjct: 616 QAQQIKPSEPDNEEKPGVRIATMH-------RVKGLQFNRIFICSFNYDLIPLKFALQDI 668

Query: 432 EDDLSFVCMLK 442
            DD +    L 
Sbjct: 669 SDDTARQNFLH 679


>gi|315506179|ref|YP_004085066.1| hypothetical protein ML5_5448 [Micromonospora sp. L5]
 gi|315412798|gb|ADU10915.1| hypothetical protein ML5_5448 [Micromonospora sp. L5]
          Length = 300

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 64/213 (30%), Gaps = 30/213 (14%)

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF--------NRGLIIHKLLQVIFTL 796
           +     +     L+PS         L                   RG ++H +L+ +F L
Sbjct: 9   TAAPAPVTVRASLSPSRAADFKTCPLLYRFRSIDRLPERPTVEQARGTLVHAVLERLFDL 68

Query: 797 PEHKR-KNFITSYCTKNAKLWPAKEYK--------------NLLLSITRLLENPMMTTAM 841
           P   R                  +E +                L S T LL+        
Sbjct: 69  PAAARTPESAGDLVAPQWDRLVTEEPELATLFADGDAVGPQEFLRSATALLD--GYFAVE 126

Query: 842 SCDSYSEVSVSGKIN-CPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYT 899
                        I+     +++I G +D++ ++      + +YKT     +  E     
Sbjct: 127 DPRRLEPAEREALISAVVDDELLIRGYLDRLDVAPDGALRVVDYKTGGAPREAFEARA-- 184

Query: 900 HIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV 932
            + QL  Y  +L  +      V  L+Y+ + +V
Sbjct: 185 -LFQLKFYALVLWRTRGVVPRVLRLLYLKDAEV 216


>gi|150017577|ref|YP_001309831.1| ATP-dependent DNA helicase replicase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904042|gb|ABR34875.1| ATP-dependent DNA helicase replicase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 745

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 27/260 (10%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y   K K   L++ED I     LL  +     +      EI +++IDE QD S +Q+
Sbjct: 484 IRRYTLEKIKVHRLNYEDQI----ALLYLKGAMGDLPKT--SEIKYVIIDEAQDYSPLQY 537

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+   L            +   +  +GD  QSI  F             I  +  T    
Sbjct: 538 EIFYQLF-----------NHANMTILGDLNQSINPFM--NVGDYKNISHIFAEDNT---- 580

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQ 313
              II L  S+RST +I     ++      AQ +       +         +    L + 
Sbjct: 581 --CIINLTKSYRSTMEITKFSRRLLDKGLEAQCVERSGEEPLLLGFLNEEAIKEKLLEDI 638

Query: 314 VVSQHDSQCNPQQESWTSYF-DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            + +  +  +    + T+   + +          R I       +    +      + ++
Sbjct: 639 KIYKEKNYKSIGIITKTAKEANEVYNFLKDKTNVRSIIKDDDEYVSGILVIPAYLAKGLE 698

Query: 373 AKDILVLVRKRKDTPLITFL 392
             D++++     +       
Sbjct: 699 F-DVVIIYNAGDENYSCEEE 717


>gi|269956688|ref|YP_003326477.1| Superfamily I DNA and RNA helicase-like protein [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305369|gb|ACZ30919.1| Superfamily I DNA and RNA helicase-like protein [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 724

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/382 (12%), Positives = 104/382 (27%), Gaps = 58/382 (15%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           L+ R G   +     + +            +   ++    T   T + +A+   QA+   
Sbjct: 285 LRRRLG---DARVAGMLERAVRGHQAPGGTLTVTIAGDRITLTETEIAEARATAQATGLA 341

Query: 61  --CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
                E F  L +  LT +   +  +    +++    L  +    +     +        
Sbjct: 342 HHPAREVFVELVTDALTDEVQERARVFLARMDEDMEVLAGRFDIEKAVAADLARLGFEAD 401

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
                     LA+       E+   + V+D   +       L   DV A +  +  +   
Sbjct: 402 EGGVAGHKAALAELDPEALRESLAHDPVID-AAVEGLWPR-LTAADVVAEVLGRRRRRWT 459

Query: 179 -----------------------HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
                                  H+++DE Q+ + +QW  +                 R+
Sbjct: 460 DAHLPLLDEAAALLDGPGGRTFGHVVVDEAQELTPMQWRAVLR-----------RCPGRS 508

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +  VGD  Q+                        +  ++  +  L + +R+T  +L   +
Sbjct: 509 MTIVGDLAQA----------GPATGAPTWDAALGDVARRAQVHTLTVCYRTTTQVLAAAE 558

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT-------VQLWEQVVSQHDSQCNPQQES 328
            + +     Q  S    T    R                V+  E               +
Sbjct: 559 PLLAEIAPHQPRSRAIRTGPAVRRITTPPPVANPAPLPVVEPVETTPPPVADPVPTTPAA 618

Query: 329 WTSYFDSLPQESSASILARRIA 350
            +  FD L        +A  +A
Sbjct: 619 ASGGFDRLNHRVVRDFVAAEVA 640


>gi|327398225|ref|YP_004339094.1| hypothetical protein Hipma_0052 [Hippea maritima DSM 10411]
 gi|327180854|gb|AEA33035.1| hypothetical protein Hipma_0052 [Hippea maritima DSM 10411]
          Length = 933

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 100/868 (11%), Positives = 221/868 (25%), Gaps = 176/868 (20%)

Query: 150 ED--LIINTNDL--LKKRDVSAWIRYKIDQEINHI-LIDEVQDTSLIQWEVIRSLTEDFF 204
           +D  L+     L  L        +  K+     +I  IDE Q        ++  L   + 
Sbjct: 108 DDAQLLGWAKRLSSLFDEIDRQLLDKKLAN-FQYIEAIDEAQ-------LILERLKSLYA 159

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGA-EPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                    ++    GD      SF  A +       K   +                  
Sbjct: 160 KY---REDLKSFTYSGD------SFRRAVKITEKDEFKEDFKDSLFVYSG---------- 200

Query: 264 FRSTADILTVVD---KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
                 I+ + +   ++         +   S T +  R    G++G          +   
Sbjct: 201 ------IVYLSNSDLEIIKNISTVADIVYLSQTDLSKREKTKGKIGFSTFKVIDELEAKL 254

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +     ++     ++  +                 +           K++ +   + V++
Sbjct: 255 KKAINIKTKQIKSNTNKETELFFYQFADTHTQAEAIFN----ILKKHKQIKEPSKLAVIL 310

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
                   +  L  F+  DY I++     F          + ++    L  ++       
Sbjct: 311 PN---QATLFPLLSFIDKDYNINITM--GFPFLSTSVGMFVDSVFEIALDVKNREQEAQT 365

Query: 441 LKSPLF----NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK-YIHELIHIA 495
           + S L     + S   +FK    +       E  +  +     K    I+  I   I+I 
Sbjct: 366 VNSKLLVKFLSSSIIGLFKDEITKKAELIKKEIFENGSGSYTFKNGSTIQSLISSFININ 425

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLN--FTLRNEQNSYSSLQELISE 553
              S  D F  ++      +       ++    L + L        +     S+    + 
Sbjct: 426 SLKSLKDAFIELINGIDEEKLQEFELESQ----LFQLLQTHIIDAIDNLPDRSIDLKFAY 481

Query: 554 LEQYPPTIKRAHSANH---NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                                ++IM +  A+ L    V + D    V          +  
Sbjct: 482 QLTKEILKDIQVPFEGYPLKGIQIMGMLEARSLSFDEVIVADVNEGVLPSIDKIDPLLPE 541

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
            +    G+  +               K  +   +  + RL+Y     +S +  I     +
Sbjct: 542 EIKVALGLTSF---------------KQKEALVKYNFFRLIY-----SSSKAHIMYKVGS 581

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
           +  +K  +  + + +        +                +  +     E       +  
Sbjct: 582 TGMEKFIKSRFAEQLILLEELKGKKLNFYTPKINLTVAGDSKNYIEKDEEAINYFNSKI- 640

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
                  +I   L  P  + +     + P            SL    +    G IIHKLL
Sbjct: 641 --SFAPTEIDAYLNCPYAHYLGYIKEIKP----------RISLEDKFEANVLGNIIHKLL 688

Query: 791 QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE------NPMMTTAMSCD 844
           +                +     K     + + +  +  R L+      +      +   
Sbjct: 689 E--------------EGFAEFKGKELGKDDLEKIRKNTLRRLDNIFKNHDKETKDFLDKL 734

Query: 845 SYSEV-------------------------SVS--------GKINCPKK---DIIISGRI 868
           S  E                                     G  +       ++ + G+I
Sbjct: 735 SEFEKLGLPIILKFRLSNYFAVITNSKDFKPFEVVETEYDRGTFDIELSPTVNVTLWGKI 794

Query: 869 DQISISQQNIFIFEYKTH----HHVPQEIEHIPYTHI------------------AQLSI 906
           D+I      + I +YKT         ++I  +                        QL+I
Sbjct: 795 DRIDKVGDVLRIVDYKTGMHSLKPKVKKIIQVSNHLKYDLFNDEELKKVRDTVVSFQLAI 854

Query: 907 YEKILKDSYPNKSLVCLLIYVSEPKVFI 934
           Y  I+ + + +K +     Y+ +  +  
Sbjct: 855 YMLIITNEWKDKEITTEFHYIGKSNIIE 882


>gi|289810407|ref|ZP_06541036.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 202

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/179 (7%), Positives = 48/179 (26%), Gaps = 29/179 (16%)

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
             +  D+     ++ + +    +    +     +  + G  +H L + +        +  
Sbjct: 15  HSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQPIDPQWV 74

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPM---MTTAMSCDSYSEV----SVSGKINC 857
                    +          L ++  +  N     ++     +   E+     ++  +  
Sbjct: 75  QEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLPIAQPLTA 134

Query: 858 PKKDIIIS----------------------GRIDQISISQQNIFIFEYKTHHHVPQEIE 894
            + D +I                       G ID +   +   ++ +YK++        
Sbjct: 135 GELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWLGEDSAA 193


>gi|255009002|ref|ZP_05281128.1| hypothetical protein Bfra3_07667 [Bacteroides fragilis 3_1_12]
 gi|313146742|ref|ZP_07808935.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135509|gb|EFR52869.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 957

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 78/706 (11%), Positives = 180/706 (25%), Gaps = 100/706 (14%)

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
             F   ++           + +           +  E +        N            
Sbjct: 224 HFFRQLQSTGKALFYWDYDVFYTQLPSQHKQRHEAGEFINRNLKLFPNELPAELFDELRK 283

Query: 336 LPQ-----ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
             +       + +  AR +   I   + ++      +  V+   + L+L         I 
Sbjct: 284 PKKVRFISSPTENAQARYLPEWIRENLSSE----EKENAVVLCNEALLLPVLHS----IP 335

Query: 391 FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
              R +       +     +   + +         R    +    +   +LK P      
Sbjct: 336 EEVRNVNITMGFPLAQTPVYSFINAILELQTSGY-RTESGRYTYEAVQTILKHPYTRRLS 394

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH--DFFTLIL 508
           D+   +  +  +T   Y +  +            +  +    +  +    +  +    + 
Sbjct: 395 DNAEPLQRELTKTNRFYPFPSELKKD------RFLDLLFTPRNGIRELCIYITELLKEVS 448

Query: 509 GAKKGRQQFISRFGNEVIDVL-------DEFLNFTLRNE-QNSYSSLQELISELEQYPPT 560
              +  Q+    F     + L       +  LN     E Q    +L+ L++++      
Sbjct: 449 ILYRHEQENDDIFNQLYRESLFKSFTLANRLLNLIDNGELQVRIDTLKRLLNKILNAANI 508

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                      ++IM V   + L+   + L+            +   I  +L    G+  
Sbjct: 509 PFH--GEPAIGMQIMGVLETRNLDFRNLLLLSLNEGQLPKSGGESSFIPYNLRKAFGMTT 566

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRT 680
              ++              +   + E   L+Y                NTS++  +    
Sbjct: 567 IEHKNAV------YAYYFYRLIQRAENITLMY----------------NTSSDGLNRGEW 604

Query: 681 WYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
              M+         + +  L    +         +        L +        D     
Sbjct: 605 SRFMLQFLIEWSHEISREYLEAGQSPQNSRDIRITKTPEIIDRLYQTYDFSHNAD----- 659

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTL 796
             + SP   +      L             + + ++  +   G I H+  Q+    +   
Sbjct: 660 ALMLSPSALNTYLDCRLKFYFRYVARLKAPDEVSAEIDSALFGTIFHRSAQLAYLDLTAH 719

Query: 797 PEHKRKNFITSYC--------------TKNAKLWPAKEYKNL--LLSITRLLENPMMTTA 840
            +   K  I                   +     P  E      +  I   +    +   
Sbjct: 720 KQEIHKEDIERLLRDNVRLQNYVDTAFKEEFFHVPLDEKPEYNGVQLINSKVITSYLRQL 779

Query: 841 MSCDSYS--------EVSVSGKINCPKKDIIIS----GRIDQISISQQNIFIFEYKTHHH 888
           +  D           E  V+  I       ++S    G ID++   +  + I +YKT   
Sbjct: 780 LRNDLQYAPFRMIGMEQKVTEDIQIEGPKGMLSLKIGGTIDRMDSKEGTLRIVDYKTGGS 839

Query: 889 V--PQEIEHI------PYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
              P  +E +         +I Q  +Y  I+      K +   L+Y
Sbjct: 840 PKVPANVEQLFTPAEGRPNYIFQTFLYAAIMARQQTLK-VAPSLLY 884


>gi|158340371|ref|YP_001521727.1| endonuclease [Acaryochloris marina MBIC11017]
 gi|158310612|gb|ABW32226.1| RecB family exonuclease, putative [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 23/184 (12%)

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-----LPEHKRKNFITSYCTKNA 813
           P   + + +  L S  +       G+ +HK L  I+       P      F   +     
Sbjct: 17  PKAYNFRYERGLSSPSAFGSPA-FGIALHKTLADIYKDWNYGYPLPSLDWFAVCWQAHTG 75

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK----DIIISGRID 869
           +L PA+ ++       ++     +           + V GKI    +    +  I+GR D
Sbjct: 76  ELKPAQIHEGW--MALQIYYEKYVAPL--PQIRKPLGVEGKIKASFQVNNIEFSITGRYD 131

Query: 870 QISISQQNIFIFEYKTHHH--VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           ++  +   + + +YKT         I+        QL +Y  IL+  YP       LIY+
Sbjct: 132 RLDYTDNGLELIDYKTSKTIGPSDGID-------LQLGLYFLILEQIYPEALETLSLIYL 184

Query: 928 SEPK 931
            + +
Sbjct: 185 RQGQ 188


>gi|52079564|ref|YP_078355.1| ATP-dependent deoxyribonuclease subunit B [Bacillus licheniformis
           ATCC 14580]
 gi|52784928|ref|YP_090757.1| hypothetical protein BLi01156 [Bacillus licheniformis ATCC 14580]
 gi|319646647|ref|ZP_08000876.1| AddB protein [Bacillus sp. BT1B_CT2]
 gi|81386041|sp|Q65LK0|ADDB_BACLD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|52002775|gb|AAU22717.1| ATP-dependent deoxyribonuclease (subunit B) [Bacillus licheniformis
           ATCC 14580]
 gi|52347430|gb|AAU40064.1| AddB [Bacillus licheniformis ATCC 14580]
 gi|317391235|gb|EFV72033.1| AddB protein [Bacillus sp. BT1B_CT2]
          Length = 1166

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 76/715 (10%), Positives = 203/715 (28%), Gaps = 154/715 (21%)

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
            +   +     +    + Q S+       IA  I ++I              + +DI V+
Sbjct: 298 DERPAKPYPGQTESLRIMQASNRRTEIEGIAREIHSLIRQGR---------FRLRDIAVI 348

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
            R  +D        + +  D ++    + +  + +H  I+ + +    I       +   
Sbjct: 349 ARNVED---YKDTIKEVFKDCELPFFIDGKESMQNHPLIELIRSTLDIIKGNWRYEAVFR 405

Query: 440 MLKSPL-----------------------------------------FNFSEDDIFKICT 458
            +K+ L                                            S D+ F    
Sbjct: 406 CVKTELLFPEGQPKERLREQIDQLENYCIAYGIKGDRWTSKDPFVYRRYASLDEDFAKTD 465

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
           +  ETE +   ++ +    I + Q  +K    +  +A+    +     +    +  ++  
Sbjct: 466 KEIETENMLNELKGWIVPPIHRLQKRLKKAETVREMAEAVYLYLEEADVPMKLEQERRLA 525

Query: 519 SRFG--------NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
              G         +V D + + L+  +        S       +E    ++K A      
Sbjct: 526 EEGGRIAESRQHEQVWDAVIQLLDEFVEMMGTERISFALFQQMIETGLESLKFALIPPAL 585

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           ++V I  +  ++   +   FL+     +   +             D G+     +   + 
Sbjct: 586 DQVFIGNMDLSRMYGTKCTFLIGVNDGILPARPA-----------DDGVLSDEDREWLKR 634

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
           N     +    +    + N L+Y+ ++  S++L +      S  K     T    + + F
Sbjct: 635 NG--AQLAATGREQLLDENFLIYMTLSSPSEKLYVSYPIADSEGKTLLPSTVVKRLNELF 692

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
            + E    I     ++ +  + +  +     +    +     +      +    ++ + N
Sbjct: 693 PDSEEKMLIHEPEQLDDEAQLEFLVNKGIALSHLAGQLGIWTRQYAISDVWWSTYNFLMN 752

Query: 750 DINEPYIL------------------------------NPSTIDTKGKTNL--------- 770
           + +  +                                + S ++T               
Sbjct: 753 EPDRIFSQNILSSLFFRNKVENLNRHVSRDLYGEHIQGSVSRMETFKACPFSHFASHGLK 812

Query: 771 --ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
             E      +  + G + H  L++I       + ++         +   +   + L   +
Sbjct: 813 LKERQFFKLEAPDIGQLFHSALKLISDRLHELKLDW-RDLTKAQCETLSSDAVERLAPKL 871

Query: 829 TR--LLEN--------------PMMTTAMSCDSY----SEVSVSGKINCPKK-------- 860
            +  LL +                ++  +S  +     + V +                 
Sbjct: 872 QKEILLSSNRHHYVKQKLQKIIARVSGILSEHAKASGFAPVGIELGFGGKGPLPPMRFTL 931

Query: 861 ----DIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                + + GRID++  ++ +    + I +YK+      ++  + Y    Q+  Y
Sbjct: 932 KNGCTMELVGRIDRVDKAESSKGLLLRIVDYKSS-DKGLDLAEVYYGLALQMLTY 985


>gi|168178101|ref|ZP_02612765.1| putative helicase [Clostridium botulinum NCTC 2916]
 gi|182670516|gb|EDT82490.1| putative helicase [Clostridium botulinum NCTC 2916]
          Length = 752

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 37/169 (21%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDF-----EDLIINTNDLLK----KRDVSAWIRYKID-- 174
            + + K L  + E   KK+  +++     +++   T ++L+      +    + Y     
Sbjct: 452 LVDVYKKLFENLEFFLKKSN-IEYHEKNIDEIKNYTLEILRIGKLNYEDQPPLLYLKGAL 510

Query: 175 ------QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  EI +++IDE QD + +Q+E+   L            +   +  +GD  QSI  
Sbjct: 511 GDLPKTSEIKYVIIDEAQDYTPLQYEIFSQLF-----------NHANMTILGDLHQSINP 559

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           F             +  K  T       II L  S+RST +I     ++
Sbjct: 560 FM--NVGDYSNISNVFPKDNT------CIINLTKSYRSTMEITEFSRRI 600


>gi|114705058|ref|ZP_01437966.1| hypothetical protein FP2506_08976 [Fulvimarina pelagi HTCC2506]
 gi|114539843|gb|EAU42963.1| hypothetical protein FP2506_08976 [Fulvimarina pelagi HTCC2506]
          Length = 1049

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/491 (9%), Positives = 117/491 (23%), Gaps = 58/491 (11%)

Query: 429 LSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
               DD +   + K      S          R       +  +   +  I+      + +
Sbjct: 487 ARPVDDEAAAEVTKQDRIRLSRPAQLVSKEDRELARRFAQAFEASISPLIALRGEATREL 546

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQ--FISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
            +           +    +   + G  +  +    G+ + D L   +           + 
Sbjct: 547 AD-----YTAVLTEVLETLCRDENGYPRELYAEEPGHALKDFLSSLVASPRTGFDFPATE 601

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L++++  L        R   +    V       A+        L       +        
Sbjct: 602 LEDVVDALMASVTVRPRGGLSARAFVW--GTLEARLQSVDTAILGGLNEGTWPAGAKNGA 659

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            +   +  D  +     +     +     +   +            V +TR++ Q     
Sbjct: 660 FLSRMMRRDIALDPPERRIGLAAHDFWMAMGARR------------VILTRSTKQ----- 702

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
                             +   +                K   I Y  +    E +    
Sbjct: 703 -------------DGAPTIASRWLQRIAALAGPERTGDLKRRGIVYLHAARRLEESSRTA 749

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
                +     +   + +S  + +                   L+ L+       RG + 
Sbjct: 750 IAARPEPKPPVEKRPRRYSVTEVETLIRDPYAIHATKILQLEPLDPLMRSPAAAERGSLY 809

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL------------LEN 834
           H +L            +       + A+     + + L   I               L+ 
Sbjct: 810 HAILSDFVQNGLDPMADAALDQLLEIAR--DRFDKEQLPAEIEAFWWPRMEAIASGYLDW 867

Query: 835 PMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQEI 893
                A     ++E  + G I     D+ + G+ D+I  +   +I I ++KT       +
Sbjct: 868 ERGRNADVAVRHAE--IKGSITVTGIDVELVGKADRIDVMRDGSIEIIDFKTGTAP--SV 923

Query: 894 EHIPYTHIAQL 904
                    Q+
Sbjct: 924 AQARSLLAPQM 934


>gi|167845097|ref|ZP_02470605.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           B7210]
          Length = 217

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 75/225 (33%), Gaps = 11/225 (4%)

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-ELEQYPPTI 561
               ++    G ++            L E        +     +L+ L +   E      
Sbjct: 1   IAERLMAGADGERRVTDVN------HLAELTQARASAQPGIAPTLRWLAAQRREGGGDDA 54

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
           +    ++ N V+I+TVH +KGLE  +VF                +      +D+ G  + 
Sbjct: 55  QLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLREPAGSGLPDAREYHDESGCAVL 114

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK--HSNTSNEKKSNQR 679
                  +       +   +    E  RL+YV +TRA  +  +    + ++ + K++ + 
Sbjct: 115 HYGC--DDEAAERASREAVREQAAERARLVYVALTRAVYRCYLVAGTYQSSRSTKEARRS 172

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               +V  +  + +   K    ++   + W A           P+
Sbjct: 173 VLNWLVAGAGRDFDAWLKEPPEDAELAERWQALAGGPVTLGALPV 217


>gi|262194252|ref|YP_003265461.1| hypothetical protein Hoch_0965 [Haliangium ochraceum DSM 14365]
 gi|262077599|gb|ACY13568.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 387

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 55/199 (27%), Gaps = 37/199 (18%)

Query: 756 ILNPSTIDTKGKTNLE--------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
            L+ S +       L             D+     G  +H  L+ +              
Sbjct: 3   RLSYSRLSRFETCPLSYRLHYLDQREAGDSVPLAFGSAVHAALEHLVR----------EH 52

Query: 808 YCTKNAKLWPAKEYKNLLLSITR---LLENPMMTTAMSCDSY--SEV---------SVSG 853
              +      A+   +L  S      L+  P+    ++       E          +V  
Sbjct: 53  LAEERVGPLCAERAASLWQSAWTESGLVGLPLFREGLALVHRFVREQGVLDHLDVLAVEQ 112

Query: 854 KINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           +         + G +D++         I +YKT+  +    E        Q+S+Y+   +
Sbjct: 113 EFRITVGGFEVLGYLDRVDRVDDETVDIVDYKTNRQLFTRDELDGS---LQMSLYQLAAQ 169

Query: 913 DSYP-NKSLVCLLIYVSEP 930
             +P  K +      +   
Sbjct: 170 SLWPWAKKVRLTFWMLRHG 188


>gi|146301398|ref|YP_001195989.1| superfamily I DNA/RNA helicase-like protein [Flavobacterium
           johnsoniae UW101]
 gi|146155816|gb|ABQ06670.1| Superfamily I DNA and RNA helicase-like protein [Flavobacterium
           johnsoniae UW101]
          Length = 637

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 72/605 (11%), Positives = 171/605 (28%), Gaps = 108/605 (17%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRD---RFNTYKMFKSTLASLTLAKYLNAHYE 138
           K  ++ +I+ K  +L+E   K  +   +      +  T K         T++++      
Sbjct: 106 KKWVSSKIDSKLEELQEARAKFSNRTWQSTRDNNKLETAKYLHMKENFHTVSEFQYETGS 165

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           +      +L   D+I     ++    +   I   +  +  +  IDE QDT     E +++
Sbjct: 166 KYLD--GILGHSDIIAMAPQMIISNPLLQII---LSNKYPYFFIDESQDTIP---EFVKA 217

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH-GAEPKRVLREKRINQKRATNAGQKFSI 257
           +          +     L   GD  Q IY    GA                      +  
Sbjct: 218 MK-----VVQMNVKNFCLGFFGDPMQKIYHTGSGAIV----------------IETGWQE 256

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I  P +FR + ++L V++K+           +     +          G+ Q++     +
Sbjct: 257 IRKPENFRCSKNVLDVINKI--RALGDGLKKQTGGRKMFVDGEWQLINGSAQIFILQADE 314

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
             ++      S+ +     P   S    A      I + I  + +               
Sbjct: 315 RHAEKIALVRSYLADQLKDPLWKSDKKEADLKVLVIEHRIAANRLK------------FA 362

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
            L    KD+                    +  F      A+   +     +++   +   
Sbjct: 363 ELYSAFKDSSTD---------------SLSMSFSEGTSWALMPFLKYILPLINAYRNGEH 407

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
             ++                      ++  +  +   +  +++ +  ++ I++L+ I   
Sbjct: 408 FQVVN-----------LLRQYCPLLQKSHLQLPESEPSKILNELKVHLEIINKLLKIESP 456

Query: 498 CSPHDFFTLILG------AKKGRQQF-ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQEL 550
            +  + F+ +          + R +   +  G+   + +           +     +   
Sbjct: 457 ATVENLFSYLESNNLISFDDRIRTRLNKASKGSLEDEDISVTDQVIANFFKCPVFQVWGY 516

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
              L +  P   +              H+ KG E   V +V    +           ++ 
Sbjct: 517 ERYLNEESPYSTQ--------------HSIKGAEFNRVMVVLDDEEGRRSTSYSYERLLG 562

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                        ++++Q+   RL YV  +RA   L +   +N 
Sbjct: 563 IKELSDTDVTNAGNG--------------RETSQDRTRRLFYVCCSRALTDLAVVLFTND 608

Query: 671 SNEKK 675
               K
Sbjct: 609 PRSAK 613


>gi|299143271|ref|ZP_07036351.1| hypothetical protein HMPREF0629_00117 [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517756|gb|EFI41495.1| hypothetical protein HMPREF0629_00117 [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 904

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/552 (11%), Positives = 158/552 (28%), Gaps = 38/552 (6%)

Query: 384 KDTPLITFL-TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
           K   +   L         K  +   +   L ++L ++    +   I  +  +++    ++
Sbjct: 286 KQVEMFENLTLNEETIYSKYPI-IEEFLSLIEYLRVQSRKNILSRIKLKYFEITDSDEME 344

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             +   S  ++ ++      +  + E         + K +   +      + ++    + 
Sbjct: 345 YEISKMSFRNLDELVENTRTSVELDEKNLIEFYELLKKLKVNFEGRESFKYYSEKLEEYL 404

Query: 503 FFTLILGAKKG---RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
               ++  +     R + I +   + I  +   L+     +         L  +      
Sbjct: 405 ETAELVSERVYASTRDEIILKRDRQNIRSIKLLLDKLKNYDVYFKKVSFGLYIDFLNSYL 464

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
            +    + N     +M++  +  L    VF+ D   + F     +      + N++    
Sbjct: 465 EMIAFDNTNEYAPSVMSMDKSLYLRFNNVFITDFNLE-FPSYPSRDFIFNKTNNNE---- 519

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI---------ICKHSNT 670
           +        ++      + LK       ++  Y+   R  D  +         I      
Sbjct: 520 LINMGFVIESDRQIYDRELLKLLKLISLSKTAYLCYAREDDSSVYKDLFKKIKIASSVEI 579

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
           S  ++ +     ++  +    ++       +N    +E I  E          +   + +
Sbjct: 580 STVEQLSLEIIDEIEENKVDENKIKLFNSFSNYNLLNEKIELENKRLLGNKEIILSGDAL 639

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
             L +         +     +  PY      I       +     D    + G I H +L
Sbjct: 640 VSLRNLIDRRGFKVTDFDLYVKSPYTFLFERI--LKIEEMLRRQKDTYHIDIGNIYHHIL 697

Query: 791 QVIFT-LPEHKRKNFITSYCTKNAKL----------WPAKEYKNLLLSITRLLENPMMTT 839
           +  F   P    +  + +                    + +   +   +   +E      
Sbjct: 698 ERYFKKYPNELNETMLKAIIKSELIDELPVSGKYTALDSAKVDGIFSILKNFIEL----D 753

Query: 840 AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEY-KTHHHVPQEIEHIPY 898
               D +  V     IN       I+GRID++        + +Y K++  VP + + +  
Sbjct: 754 LSLRDDFIPVGFEVPINIKLDKYQINGRIDRVDRKGDYKILIDYKKSNFGVPTQKD-MAN 812

Query: 899 THIAQLSIYEKI 910
               Q  IY   
Sbjct: 813 KEAFQFPIYIMA 824


>gi|163853835|ref|YP_001641878.1| double-strand break repair protein AddB [Methylobacterium
           extorquens PA1]
 gi|163665440|gb|ABY32807.1| double-strand break repair protein AddB [Methylobacterium
           extorquens PA1]
          Length = 1047

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/460 (11%), Positives = 118/460 (25%), Gaps = 54/460 (11%)

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-- 516
           QR+ TE V    ++         + ++  +   +   +     +   L+  A   R+   
Sbjct: 498 QRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDAFRTDLQPEIGNLVALAAGHREACE 557

Query: 517 ---------FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---EQYPPTIKRA 564
                          +  +D LD   +     EQ          +          T+  A
Sbjct: 558 RMMGGAEEGDADESDDPSLDTLDGLFDDLESAEQEELPGRFSDYAAFFTALARDRTVACA 617

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             + H  +RI+    A+ L    + L      V+  +      +   +  D G+     +
Sbjct: 618 QRSAHPRLRILGPLEARLLSVDRIVLGGLDETVWPVRQTTDAFLNRPMRGDVGLSPPERR 677

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                +     +                  +TRA+ +           E      + +  
Sbjct: 678 IGQAAHDFVQGLGTHDA------------VVTRAAKR-----------EGSPTVPSRFLQ 714

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
              +F  D             +      +     P                +  +  +  
Sbjct: 715 RLRAFGGDAVWADAIARGQRLRGLAARLDRGQAAPPPRLKR-----PAPKPDPALFPERL 769

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHK 800
           S  + +       +       G   LE +        RG +IHK+L    Q         
Sbjct: 770 SVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSQAHPGALPAD 829

Query: 801 RKNFITSY-------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
            +  + +                 A+ +          LE            ++E S   
Sbjct: 830 AETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEARQRQGLHTIHAERSGKV 889

Query: 854 KINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQE 892
            I   ++   +S R D+I + +  +  I ++KT       
Sbjct: 890 TIPLGERTFTLSARADRIEARADGSYCIVDFKTGTPPSNR 929


>gi|167893642|ref|ZP_02481044.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei 7894]
          Length = 247

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 46/180 (25%), Gaps = 40/180 (22%)

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           L+  +    G  +H+LL++                  +          + L   +TRL+ 
Sbjct: 7   LAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVA 66

Query: 834 NP---------MMTTAMSCDSYSEVSVSGKINCPKKDII--------------------- 863
           +           +         +E+           + +                     
Sbjct: 67  DLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAG 126

Query: 864 -ISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            + G ID I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 127 FVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 186


>gi|228474397|ref|ZP_04059132.1| ATP-dependent nuclease subunit B [Staphylococcus hominis SK119]
 gi|228271756|gb|EEK13103.1| ATP-dependent nuclease subunit B [Staphylococcus hominis SK119]
          Length = 1162

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 91/770 (11%), Positives = 203/770 (26%), Gaps = 153/770 (19%)

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
               +   I             +  + +  +          + +  +  L + S+     
Sbjct: 253 KEIANELHIPLNEHYFTTPYRFKNKDLLQLEQQFDALQVNPTQSHGYIDLLESSNMREEV 312

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             IA  I           + + +  + +DI +L R      L   +       Y I    
Sbjct: 313 NEIARRI---------IKDTRDKHFRYQDIAILYRDETYAYLFESIL----PQYDIPYNI 359

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--------------------- 445
           + +  +T H  ++ + +L   I S       + + K+ +                     
Sbjct: 360 DTKKSMTHHPIMEMIRSLLEVIQSNMGLSPMMRLFKTNILSNQFKNSSYLIDLLENFVIE 419

Query: 446 FNF-SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY--------IHELIHIAQ 496
                +  +            +     +        F+ V++         +H    +  
Sbjct: 420 RGIYGKKWLDDKLFNIDNFTKMGRKAHQLTEEEKEAFEDVVRLKDDVVNKILHFEKAMLH 479

Query: 497 FCSPHDFFTLILGAKK----------GRQQFISRFGNEVIDVLDEF-------LNFTLRN 539
             +  D+ T      +           R +   +  +E  + +D+        L+  +  
Sbjct: 480 SKNVRDYATAFYETMEAFDLPKYLMAHRDELDLKGDHEKAEEIDQLWNGLIQILDDLVTV 539

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
            +    SL   +   +     ++        ++V I T+  AK      V++V     V 
Sbjct: 540 FEEEEMSLNRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHVYMVGMNDGVM 599

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
                    I      D    +   +     +  SD+++        +   + Y+ MTRA
Sbjct: 600 PQPLSSSSLI-----TDEEKRLLEERGSVELSPTSDILQM-------DEAFVCYIAMTRA 647

Query: 659 SDQLI----ICKHSNTSNEKKSNQR------------------TWYDMVYDSFHNDERVK 696
            +Q+     +        EK                         Y +      +  ++ 
Sbjct: 648 CEQMTFSYSLMGMQGDEKEKSPFLNQIQALFSNLDIKNIHYLHHAYPLTLMEHPHQTKIH 707

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             +   S  ++E +A  W   +   +  E        +            +   ++E   
Sbjct: 708 LFEALKSWLEEEAVADTWLDAYKVISENEELNDSINYLSTALTYDNETIQLTPQLSEALY 767

Query: 757 -----LNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLL---------- 790
                 + S  +                  E      ++F+ G I H  L          
Sbjct: 768 GTSINASVSRFEGYNDCPFQHYATYGLRLNERTKYQLESFDLGNIFHNALKYISDKVNGE 827

Query: 791 ------QVIFTLPEHKRKNFIT-------------SYCTKNAKLWPAKEYKNLLLSITRL 831
                 Q I  L E   ++ +               Y +K   +      K L       
Sbjct: 828 FSQLDNQKIHALTEEALQHVLPQVQFNLMDSNAYYRYVSKRIGVIVESTLKALRYQNENT 887

Query: 832 -LENPMMTTAMSCDSYSEVSVSGK--INCPKKDIIISGRIDQI--SISQQN--IFIFEYK 884
                   TA      +E  +     +      I I G+ID+I          + I +YK
Sbjct: 888 KFRPKRFETAFRKKPRTEEELIAHPLMTTQGIPIHIRGQIDRIDAYTKNNTSFVNIIDYK 947

Query: 885 -THHHVPQEIEHIPYTHIAQLSIYEKIL----KDSYPNKSLV-CLLIYVS 928
            ++H     ++ + Y    Q+  Y  I+    +    +  +    L+Y  
Sbjct: 948 SSNHSANLNLKKVYYGKQMQMMTYMDIVLQNSERLGLSSEVKPGGLLYFH 997


>gi|300310195|ref|YP_003774287.1| inactivated superfamily I helicase [Herbaspirillum seropedicae
           SmR1]
 gi|300072980|gb|ADJ62379.1| inactivated superfamily I helicase [Herbaspirillum seropedicae
           SmR1]
          Length = 924

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/553 (9%), Positives = 137/553 (24%), Gaps = 65/553 (11%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
               +     R L    ++SV     + L+   A   L A    + ++ +  + + +LKS
Sbjct: 334 AQDRVTARRLRALLERAQVSVADETGWKLSTTRAAAALAAWNDLVSARGETNALLDLLKS 393

Query: 444 PLF--------NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           P          +       ++       +                 Q ++    +     
Sbjct: 394 PFVFPADPGRADRVMRIEARLRRANIAGDWQALQTAFADARDPDDLQCILTLARQAARFG 453

Query: 496 QFCSPHDFFT---LILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
              +   +      +  A            G + + +LDE      +       S  E  
Sbjct: 454 GRKTLSQWCETQRRLCEALGMDAALREDGAGQQCLLMLDEI--AAEQGALQDQFSFAEWR 511

Query: 552 SELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           + L                 V ++ ++ A+      V ++   +        + +    +
Sbjct: 512 ALLNLRLDATSYMPPIKDRRVVMLPLNGARLRRFDAVLVIGADAAHLPSPPQETLFFSNA 571

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
           +             +  N       +  +     E   +          ++++C  ++  
Sbjct: 572 V------------RRELNLATRATRQRQQLRDLVELLCIN--------PEVVLCWQTHQD 611

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIK 731
            E  +    W + +             +L       +  A   S   P        + + 
Sbjct: 612 GE-PNPVSPWIERLELKLAQQGAAPLQRLELPPPVQQLRALPSSMPAPS-----APDLLP 665

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL- 790
             +        L  P +        +               L    +  + G  +H++L 
Sbjct: 666 PTLSASGFGSFLACPYQFFAQRMLRVAVMD----------ELSEMPEKRDYGSWLHEILY 715

Query: 791 ---QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
                +                          +     L+     +  M    +  +   
Sbjct: 716 KYHAHLRDNDTPLPARAALLAQFSEEVFQREMQRHPAALAFHARWQKVMPAYLLWANERE 775

Query: 848 ---------EVSVSGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIP 897
                    E S S  +      I + GR+D++  ++     + +YKT        + + 
Sbjct: 776 AEGWQFAFGEESQSQTLQWSDGGIELYGRLDRVDRNEQGQRALLDYKT-RSAASLRQKVK 834

Query: 898 YTHIAQLSIYEKI 910
                QL+ Y  +
Sbjct: 835 EDDDHQLAFYGLL 847


>gi|91202096|emb|CAJ75156.1| similar to DNA helicase [Candidatus Kuenenia stuttgartiensis]
          Length = 613

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/533 (12%), Positives = 145/533 (27%), Gaps = 124/533 (23%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              L  +D+I     L+    +   I   + Q+  ++ +DE QDT       + +L    
Sbjct: 167 EGQLSHDDIIAIAGHLITNNTILQKI---MAQKYPYVFVDEAQDTFTEIVMALNTLCSG- 222

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                  +    +   GD  Q IY     +                       +I+   +
Sbjct: 223 -------TGLPIVGYFGDPVQQIYDKRAGDFSGPEGF---------------KLIKKEEN 260

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           FR +  ++ +++   +  +                       G+V++        +    
Sbjct: 261 FRCSKAVVNLLNAFRTDIQQVSAGEA------------SKLEGSVEIRLVAAELPEG--- 305

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
           P++       + +  + +  +        I ++   +                L LVR+ 
Sbjct: 306 PRKRYTDEQIERVSAKFNDIL-------KIWDLHENEETKY------------LFLVRQM 346

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
               L     + L                 +H     L    + I              S
Sbjct: 347 IAKRLGFERLQKLFTGL---YASTHAQEDYEHGDHFLLKPFIKVI--------------S 389

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
           PL          I  + +  +   + ++  +     K ++  K + ++  +A+  S  + 
Sbjct: 390 PL---------MIAHRTNNQKEALDILRNSSPAFNPKGKNANKSLRKMRDLAK--SLIEE 438

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNS-----------YSSLQELIS 552
            +    +   R+  +    NE+I+V +       R+ +N               L +   
Sbjct: 439 LSEKWASHTLREILLFCQKNEIIEVSERLSRHLERSPRNEEYNKDINEIDKEDWLVDEFF 498

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           ++              H      T H  KG E   V +V                     
Sbjct: 499 KMRTDEIEPYADFINEH--TPYSTQHGVKGEEYKNVVVVY-------------------D 537

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           + +    ++         I     +       +   RL YV  +RA + L I 
Sbjct: 538 DIEAAWNLYSFTKMLVPEIAGSPTEG----QLDRSIRLAYVSFSRAVENLRII 586


>gi|51892446|ref|YP_075137.1| putative DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856135|dbj|BAD40293.1| putative DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 500

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 36/189 (19%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   YEE  +     DF+D+      LL   +         D+   ++L+DE QD +++
Sbjct: 201 AVYEKYEELNRNQKKWDFDDV---ALKLL---EAKRLGLITPDRCPQYVLVDEAQDLTVM 254

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q   IR LT              +L    D+ QSIY             +R         
Sbjct: 255 QLRAIRELT------------TVSLTIAADKGQSIY-------------QRNFSWTELGI 289

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
             +     L  +FRST  I+ +   +          S++        ++     G V + 
Sbjct: 290 DIRGRSRSLQQTFRSTRQIIRLARSLQRHDPLVITGSDEYVP-----AADPDVNGPVPIL 344

Query: 312 EQVVSQHDS 320
                    
Sbjct: 345 YVAPDLETQ 353


>gi|254519041|ref|ZP_05131097.1| helicase [Clostridium sp. 7_2_43FAA]
 gi|226912790|gb|EEH97991.1| helicase [Clostridium sp. 7_2_43FAA]
          Length = 747

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 19/146 (13%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            EI +++IDE QD + +Q+E++  L            +  ++  +GD  QSI  F     
Sbjct: 519 SEIKYVIIDEAQDYTPLQYEILYKLF-----------NNASITILGDLNQSINPFM--NL 565

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                   I  K       +  II L  S+RST +I     K+ S   N + ++      
Sbjct: 566 GSYTNILEIFPKD------ETCIINLTKSYRSTIEITEFSKKLLSNNVNYECVARRGDKP 619

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDS 320
           I    S    +    L +    +   
Sbjct: 620 IVLGFSDENNINEQLLKDIKTYKEKG 645


>gi|329924036|ref|ZP_08279299.1| ATP-dependent nuclease subunit B [Paenibacillus sp. HGF5]
 gi|328940875|gb|EGG37183.1| ATP-dependent nuclease subunit B [Paenibacillus sp. HGF5]
          Length = 1176

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 73/692 (10%), Positives = 163/692 (23%), Gaps = 143/692 (20%)

Query: 344  ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              A      I   +    +    ++   + +++ V VR   D      L   L  +Y + 
Sbjct: 328  HAASHRRAEIEGALRE--MLRLAQEEGARYREMAVFVRNMGD---YEHLMGPLFREYGVP 382

Query: 404  VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF--------NFSEDDIFK 455
               + +     H  ++ + +    I  +         +K+ L             D +  
Sbjct: 383  YFLDQKRSELHHPLVEFIRSALDVIGRRWRYEDVFRCVKTDLLLPLDGSLTREDMDRLEN 442

Query: 456  ICTQRHETETVYEYIQKFANCGISKFQHVIKYIH------------------------EL 491
                     T +   + +        +     I                          +
Sbjct: 443  HVLASGIQGTRWTDGRPWKGIPSLSLEEGESEIRNQDGMAAIEYARKVITEPLHAFEKRM 502

Query: 492  IHIAQFCSPHDFFTLILGAKKG--------RQQFISRFGNEVIDVLDE------FLNFTL 537
               A           +L             R    +    E  +           L+  +
Sbjct: 503  KKAASAMDQSTAVYRLLEECAVPEKLELLSRAALDAGRPEEAREHRQVWGAVLGLLDQIV 562

Query: 538  RNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                    S +     L      +K A      ++V I ++   +       FL+     
Sbjct: 563  EMMGAEKLSTELFTGVLGTGLTEMKMALVPPSLDQVLIGSMDRTRTGGVKYAFLLGINDG 622

Query: 597  VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
            V   +             D GI     + +  +  +       +     +   L+Y  +T
Sbjct: 623  VLPAQFQ-----------DDGILTEPERVRLEDRGLELAPSISR--RLLDERFLIYNALT 669

Query: 657  RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
             AS QL +   +     K          +   F  +E +   +     +  E   Y    
Sbjct: 670  SASKQLWVSYPAADDEGKPLLPSEVVRHLKMMFQLEEELLFPRPHAGQSALEQGGYAVRP 729

Query: 717  HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL------------------- 757
                     R    +   +   +   +++           L                   
Sbjct: 730  DKTLAYLAGRLRDWRNGEEIPDLWWHVYNWYAEQPGLRPRLTTMLSSLSYRNEARPLKLE 789

Query: 758  ------------NPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLL---- 790
                        + S ++           S             Q  + G + H  L    
Sbjct: 790  TSRQLYGTKLRTSVSRMERFVACPFSHFASHGLKLKDRQLYRLQAPDIGQLFHAALSSMA 849

Query: 791  -----QV--IFTLPEHKRKNFITSYCTKNAKLWPAKEY--KNLLLSITRLLENPMMTT-- 839
                 Q      L   +      +   + A +   +          I+R L+N +     
Sbjct: 850  VKFQSQHRSWGDLTAEECLREAEATVDRLAPMLQGEILLSSKRYGYISRKLKNIVGRASV 909

Query: 840  AMSCDSYS--------EVSV-------SGKINCPKKDII-ISGRIDQISISQQN----IF 879
             +   +          E+               P    + I GRID++ +++      + 
Sbjct: 910  ILGEQARRGKFEPIGLELDFGPGKPLPPLAFELPNGTKMEIVGRIDRVDMARGEHGIMLR 969

Query: 880  IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            + +YK+       +  + Y    Q+  Y  +L
Sbjct: 970  VIDYKSSQ-KDLRLHEVYYGLSLQMLTYLDVL 1000


>gi|299145464|ref|ZP_07038532.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|298515955|gb|EFI39836.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 959

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 98/847 (11%), Positives = 234/847 (27%), Gaps = 133/847 (15%)

Query: 148 DFEDL---IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
           DF+D+   +++ + L                     L+D+ +     Q E I+   ++F 
Sbjct: 105 DFDDVDKNMVDADKLFSNLQDLKN------------LMDDYEFLDKEQEEAIQQFFQNF- 151

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR------VLREKRINQKRATNAGQKFSII 258
             +          ++ D+  +IY  + A           +  + + ++  T   +    I
Sbjct: 152 SIEKRTELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQLDTEQLKYDKYI 211

Query: 259 ELPLSFRSTADILTVV-DKVFSIPENA-QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            +  +      +L  V +  F   ++A + L          +  +  + G          
Sbjct: 212 FVGFN------VLNKVENDFFRKLKDAGKALFYWDYDIFYTQQIKKHEAGEFLKRNLEEF 265

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
            ++   +                S+ +  AR +   I  +    +  +  K++    ++ 
Sbjct: 266 PNELPESLFNTFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQIAVEKEK----ENA 321

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL- 435
           +VL  +    P++  + + +KN     V     F L        + A      +      
Sbjct: 322 VVLCNEALLLPVLHSIPQEVKN-----VNITMGFPLAQTPVYSFINAAMELQTNGYRSDT 376

Query: 436 ------SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
                 +   +LK P                     + +  + +      K    +  + 
Sbjct: 377 GRFTYEAVSAILKHPY------TQQLSSHAGPLERELTQTNRFYPLPSELKQDDFLTTLF 430

Query: 490 ELIHIAQFCSPHDF-----FTLILGAKKGRQQFISRFGNEV----IDVLDEFLNFTLRNE 540
              +  +    +        + I   +       ++   E        ++   +     E
Sbjct: 431 TPRNGIKELCDYLIELIKNISTIYRKEGEYNDIFNQLYRESLFQSHTKINRLYSLIESGE 490

Query: 541 -QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 +L+ LI+++                 +++M V   + L+   + ++        
Sbjct: 491 LNIRTDTLKRLITKVLTSSNIPFH--GEPAIGMQVMGVLETRNLDFRNLIILSLNEGQLP 548

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                   I  +L    G+     ++              +   + E   LLY       
Sbjct: 549 KSGGDSSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAENITLLY------- 595

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
                    NTS++  +       M+         + +  L    +              
Sbjct: 596 ---------NTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEIRVEKTP- 645

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                E    I +  D       + SP   +      L        G    + + ++  +
Sbjct: 646 -----EVLRRIYRAYDSTNPNSVILSPSALNAYLDCRLRFYYRYIAGLKTPDEVSAEIDS 700

Query: 780 FNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSI----- 828
              G I H   Q+    +    +  +K  +      + KL     + +K  L  +     
Sbjct: 701 ALFGTIFHLSAQLAYTDLTAAGKTIQKEDLERLLRNDVKLQSYVDQAFKEELFKVSPEEK 760

Query: 829 -----TRLLEN----PMMTTAMSCDSY----------SEVSVSGKINCPKKDIIIS--GR 867
                 +L+ +      +   +  D             +VS    I   +    +   G 
Sbjct: 761 PEYNGIQLINSKVIVSYLKQLLRNDLQYTPFEMVAMEKKVSEEITIQTGQGPFTLRLGGT 820

Query: 868 IDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEKILKDSYPNKS 919
           ID++   +  + I +YKT      P  IE +         +I Q  +Y  I+        
Sbjct: 821 IDRMDAKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQSLM- 879

Query: 920 LVCLLIY 926
           +   L+Y
Sbjct: 880 VAPALLY 886


>gi|302876851|ref|YP_003845484.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|307687536|ref|ZP_07629982.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
 gi|302579708|gb|ADL53720.1| UvrD/REP helicase [Clostridium cellulovorans 743B]
          Length = 758

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 91/250 (36%), Gaps = 47/250 (18%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLK-KSQD 105
            KK   + +  +    +     +       + +P++     ++  +   L EK++  S+ 
Sbjct: 392 QKKGTVIDEVEKDFDWQ-----IDKVRRDMEDSPERRKKIIKLADERDALMEKIRKDSKT 446

Query: 106 EFIKIRDRFNTYKMFKSTLASL---TLAKYLNAHYEEAKKKNCVLDFED-LIINTND--- 158
              +  D+       +     L    + K     Y           F D +I +TN    
Sbjct: 447 LIREYIDKIKVKTPLEYYKDLLNGSEVNKEYFHKYISE-------TFTDKVIHHTNSVIE 499

Query: 159 --LLKKRDVSAWIRYKID-------QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
             LL+  D++  +  +           + HILIDE QD SL Q  V++ +          
Sbjct: 500 DGLLEVEDLAPLMFLRYHILGIEDALSVRHILIDEAQDFSLFQIYVLKCII--------- 550

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
             +  +   +GD  Q I+S+ G   +     ++   +        +S + L  S+R+T +
Sbjct: 551 --NSNSFTILGDLSQGIHSYRG--IQNWSDLEKYIFRD-----GDYSFLTLEQSYRTTVE 601

Query: 270 ILTVVDKVFS 279
           I+   ++V  
Sbjct: 602 IMDAANEVIK 611


>gi|167918355|ref|ZP_02505446.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei BCC215]
          Length = 257

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/188 (10%), Positives = 49/188 (26%), Gaps = 40/188 (21%)

Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
            +   + +L+  +    G  +H+LL++                  +          + L 
Sbjct: 9   RELAEDDILAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLP 68

Query: 826 LSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII------------- 863
             +TRL+ +           +         +E+           + +             
Sbjct: 69  AMMTRLVADLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVA 128

Query: 864 ---------ISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLS 905
                    + G ID I       +I ++K++H             +     + +  Q  
Sbjct: 129 LEAGTLAGFVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQAL 188

Query: 906 IYEKILKD 913
           +Y   L  
Sbjct: 189 LYMVALHR 196


>gi|220930782|ref|YP_002507691.1| superfamily I DNA helicase [Clostridium cellulolyticum H10]
 gi|220001110|gb|ACL77711.1| superfamily I DNA helicase [Clostridium cellulolyticum H10]
          Length = 760

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 44/231 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            K   +  +   + +++   + +  +K +D  +   +  +   + +   +   L+     
Sbjct: 407 DKKVARARVAISDASERQKYILQAFEK-RDSVLDKIEMASKSLVKEYIGSLPKLSP--YQ 463

Query: 136 HYEEAKKKNCVLD-----FEDLII------NTNDLL-----KKRDVSAWIRYKI-----D 174
           +Y +      V D     + D  I       T D+L     ++ D++  I  K      D
Sbjct: 464 YYVDLMNNAEVFDRIAGKYTDAEICSFTRDYTLDILNSKRIEQEDLAPIIYLKYKIYGMD 523

Query: 175 QEI--NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           ++I   HI+IDE QD S  Q+ V++ + +D            +   +GD  Q I+ + G 
Sbjct: 524 EKIPVRHIVIDEAQDFSAFQFYVMKKIVKD-----------SSFTILGDLCQGIHFYRG- 571

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
             +                G++   + L  S+R+T +I+   + V     N
Sbjct: 572 -VRSWDEIVNDV-----FDGKRCEFLTLEQSYRTTYEIMEAANSVMEKLPN 616


>gi|229131943|ref|ZP_04260808.1| UvrD/REP helicase [Bacillus cereus BDRD-ST196]
 gi|228651534|gb|EEL07504.1| UvrD/REP helicase [Bacillus cereus BDRD-ST196]
          Length = 778

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +++   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DEICSLTVNMLDEGKLHYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAAKMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRYLVPEGKNINAFERDGEKP 638


>gi|229165977|ref|ZP_04293742.1| UvrD/REP helicase [Bacillus cereus AH621]
 gi|228617530|gb|EEK74590.1| UvrD/REP helicase [Bacillus cereus AH621]
          Length = 778

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +++   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DEICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAAKMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRYLVPEGKNINAFERDGEKP 638


>gi|167718949|ref|ZP_02402185.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           DM98]
          Length = 251

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 49/190 (25%), Gaps = 40/190 (21%)

Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
              +   + +L+  +    G  +H+LL++                  +          + 
Sbjct: 1   APRELAEDDILAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAER 60

Query: 824 LLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII----------- 863
           L   +TRL+ +           +         +E+           + +           
Sbjct: 61  LPAMMTRLVADLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPD 120

Query: 864 -----------ISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQ 903
                      + G ID I       +I ++K++H             +     + +  Q
Sbjct: 121 VALEAGTLAGFVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQ 180

Query: 904 LSIYEKILKD 913
             +Y   L  
Sbjct: 181 ALLYMVALHR 190


>gi|325847004|ref|ZP_08169830.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480976|gb|EGC84021.1| conserved domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 1000

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 86/702 (12%), Positives = 204/702 (29%), Gaps = 132/702 (18%)

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
            + NP++    +    + +  S++     +A  I  +I                 DI  L
Sbjct: 282 EKYNPEKFWDKTSNIKIVESISSTNEIENMALMIERLIRKG----------YSYSDI-SL 330

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
           V   +D      L R + +   I +  +    ++D+  +K  ++L R ++          
Sbjct: 331 VIANED--EYENLIRRIFSRMNIPIFIDKSQKMSDNHVVKTWLSLIRLVVFNFRKTDLEA 388

Query: 440 MLKSPLFNFSEDDIFK-------ICTQRHETETVYE-------------YIQKFANCGIS 479
            ++S L +F E+ + +       + T++ +   +++              I++     ++
Sbjct: 389 FIRSDLIDFGENSLERVLVFQNYMNTRKIKGSMIFDDKYFTLDENFYKGEIKEEKKEELA 448

Query: 480 KFQHVIKYIHELIHIAQFCS------------PHDFF--TLILGAKKGRQQFISRFGNEV 525
           K   + K I +L +     S              +      I       Q+++     E+
Sbjct: 449 KVNSIRKIILDLTNDLYEISNKNISASDIVKKIFNLIDNERIKSGFNHYQEYVKDNKIEI 508

Query: 526 ID----VLDEF---LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTV 577
            +    + D+F   L   +   ++S ++L+++   +++              ++V I   
Sbjct: 509 YEENKQIWDKFITILEQIVSIMKDSKANLRKIYKLIQKACEATTIGLIPPAIDQVLIGDF 568

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
              +  +  +   V      F   +   M I  +         +  +          L+ 
Sbjct: 569 SRDRINDRKIKIFVGMTDIYFPENNNSDMIISENEKTSLEKEGFDLKIYKAKKNDKILLN 628

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLI--------------ICKHSNTSNEKKSNQRTWYD 683
            L+  T  +     Y  + + +D +               I     ++ +    + +   
Sbjct: 629 ILRMFTSSQKIIFSYSLINKNNDPMNKSTSISDIINIFPNISYQKISTGKFDLVKYSKDL 688

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
           +   ++     +K+ +      K+   AY                         K     
Sbjct: 689 LDMKAYQILWDIKEKEKVGDREKEFVKAYLQFKKDFSKNYEFNISKNSSYDLFIKGFTYS 748

Query: 744 FSPIKNDINEPYIL------NPSTIDTKGKTNLESLLS-----------DNQTFNRGLII 786
                 D      L      + S I++  +   +  ++           D      G I+
Sbjct: 749 NQKNPLDREISKKLYNKNRFSVSEIESYARCPYKYFINYGLKAKKNKNLDVDMMEIGNIV 808

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM----- 841
           H  ++ I    +  R   I +   K  +    + +K  + S    +              
Sbjct: 809 HYNMENI---SKDLRGIDIKNLDDKKLESLVEENFKKAIESSLEKMRANDNKNKFILSNV 865

Query: 842 ------------------------------SCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
                                             Y EV V            + GRID+I
Sbjct: 866 YGSTQKSTKKVLDQIKKGKFQIDGVEEKYGKGQKYPEVYV-------DDHNYLEGRIDRI 918

Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
              +  + I +YKT       I+++      QL +Y   +K+
Sbjct: 919 DRFEDFVRIIDYKTGST-EINIKYVFNGIQLQLFVYMLSVKE 959


>gi|78486039|ref|YP_391964.1| hypothetical protein Tcr_1698 [Thiomicrospira crunogena XCL-2]
 gi|78364325|gb|ABB42290.1| DNA helicase/exodeoxyribonuclease V, subunit B [Thiomicrospira
           crunogena XCL-2]
          Length = 922

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 67/652 (10%), Positives = 162/652 (24%), Gaps = 103/652 (15%)

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN------MIGTDTIFSNGKK 368
           V         QQ  +++       +  A   A ++   +         I          +
Sbjct: 199 VDDDSQPTAKQQRLYSALNPQDEIQQIALWCAEQLKQQVKTKPLHAIRIAVVAPNLAEVQ 258

Query: 369 RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI 428
           + +      VL ++             LK         +    L     +K+ +    F 
Sbjct: 259 QPLSWALDEVLYQQFGQALP-------LKAARHTLYNISLGTPLAQTPIVKNALQTLAFA 311

Query: 429 LSQEDDLS---FVCMLKSP--LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
           +  E  L+   +   L SP  L +  +     +  ++ +  +        A       ++
Sbjct: 312 MMPEKTLAYADWSSWLTSPYTLGSLVQRQKADVRCRKLQWASFKWPNLLQAIQQKETEKN 371

Query: 484 VIKYIHELIH---------IAQFCSPHDFFTLI--------LGAKKGRQQFISRFGNEVI 526
            I+    L+           +       F                   +   S    +  
Sbjct: 372 RIQLPKSLMQALEKAAQAPRSTSLILSQFIAQAEKKLQEFRWAESSKERALSSIEMQQKE 431

Query: 527 DVLDEFLNFTL----RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
             L+   +F      + +Q     L  L   L     T+ +  +     ++IM    A G
Sbjct: 432 TFLEALASFAQLNMTQAKQPVSVWLGLLKRYL---NETVHQPQTQGIVPIQIMGTLEAGG 488

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
                ++++    + +         +  +L    G+P                       
Sbjct: 489 QAFDSLWVMGLTDEAWPRPPNPNPFLPMALQRTYGLP-------------RSDALRELNY 535

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
            ++   RL       + + +              +       +  +   +    +   T 
Sbjct: 536 ARQVTLRLA----KSSPEIVWSYPQQLDDRVALPSPLLTLAELKAAQIYEPVPYQSLATQ 591

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
              + E + +      PE     R      ++  Q                   +     
Sbjct: 592 LWAQGEPLEWVADHQGPEVPLGTRVPGGSGILTAQNKCPL--------------MAFMDY 637

Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQ----------VIFTLPEHKRKNFITSYCTKN 812
               +  LE +    ++ + G ++H +L+           +  + E      ++      
Sbjct: 638 RLGARQQLEDVEEGMRSNHLGTLVHAVLEAFWRQVKTQHNLLEMDEKAVSELVSQLLEDA 697

Query: 813 AKLWPAK--------EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
                ++        E   +   I   L    +           V+           I  
Sbjct: 698 MAPLSSQFDAHYLSLEQNRIHQLILDWLALERVRPNFKV-----VAFEENHTPSIGGIEF 752

Query: 865 SGRIDQISI--SQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKI 910
           + +ID++      +       I +YKT      ++   P     QL++Y   
Sbjct: 753 NLKIDRVDEVFDAETGELSRLILDYKTGKASVGDLLKEPIE-APQLAVYLHA 803


>gi|153842218|ref|ZP_01993484.1| ATP-dependent DNA helicase rep [Vibrio parahaemolyticus AQ3810]
 gi|149745399|gb|EDM56650.1| ATP-dependent DNA helicase rep [Vibrio parahaemolyticus AQ3810]
          Length = 362

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 78/237 (32%), Gaps = 47/237 (19%)

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS-----RFGNEV 525
           Q  +  G+   +   +++  +   A+  +  +    ++                +     
Sbjct: 13  QHLSGRGLENLRRFTQWLVAIADQAERGNTVEAVRSLVRDIHYEDWLYETSASPKAAEMR 72

Query: 526 IDVLDEFLNFTLR------NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHT 579
           +  + +  ++ +        +Q    +L+E++  L       +     + + V++MT+H 
Sbjct: 73  MKNVSDLYSWIVADLEGDNYDQEE-KTLKEVVQRLTLRDMMERGEEDEDSDAVQLMTLHA 131

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           +KGLE P V+L+ +   +  H+                                      
Sbjct: 132 SKGLEFPYVYLIGSEEGILPHQTSID---------------------------------- 157

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
            +   EE  RL+YVG+TRA  +L            +  + T    + +   +D   +
Sbjct: 158 -EDNVEEERRLMYVGITRAQRELTFTMCKERRQFGELIKPTQSRFLDELPFDDVEWE 213


>gi|149199535|ref|ZP_01876569.1| putative DNA helicase [Lentisphaera araneosa HTCC2155]
 gi|149137331|gb|EDM25750.1| putative DNA helicase [Lentisphaera araneosa HTCC2155]
          Length = 697

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 64/245 (26%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            ++ L+DE+QD S ++  ++RSL  +             LF VGD  QSIYS        
Sbjct: 443 FDYCLVDELQDFSNVELRLVRSLVPE---------KANDLFMVGDPMQSIYS-------- 485

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
              ++    +   N   K     L +++R+T +I  +   V                   
Sbjct: 486 ---KRINFSQAGINIRGK-KSHRLRINYRTTEEIKKLAVSVIQ----------------- 524

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
                                 + +       +     +     +       +   I+N+
Sbjct: 525 ------------DCHYDNFEGEEEEKAGYVSLFHGSKPTYTVHKTKDTEVSSVFDAITNL 572

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
           I              Q  D+ V  R +          R   +  K+    ND    +   
Sbjct: 573 IENG----------YQYSDVAVCARTKSGL----KEFRNALHKQKVPYDDNDSDKFSTSN 618

Query: 417 AIKDL 421
           A+  L
Sbjct: 619 AVSLL 623


>gi|160886080|ref|ZP_02067083.1| hypothetical protein BACOVA_04087 [Bacteroides ovatus ATCC 8483]
 gi|156108893|gb|EDO10638.1| hypothetical protein BACOVA_04087 [Bacteroides ovatus ATCC 8483]
          Length = 959

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 101/850 (11%), Positives = 239/850 (28%), Gaps = 139/850 (16%)

Query: 148 DFEDL---IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
           DF+D+   +++ + L                     L+D+ +     Q E I+   ++F 
Sbjct: 105 DFDDVDKNMVDADKLFSNLQDLKN------------LMDDYEFLDKEQEEAIQQFFQNF- 151

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR------VLREKRINQKRATNAGQKFSII 258
             +          ++ D+  +IY  + A           +  + + ++  T+  +    I
Sbjct: 152 SIEKRTELKEKFISLWDKLGTIYHRYRANLTELGIAYEGMLYRNVIEQLDTDQLKYDKYI 211

Query: 259 ELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            +  +         V++KV S        +  +     +      Q+   +  E +    
Sbjct: 212 FVGFN---------VLNKVESDFFRKLKDAGKALFYWDYDIFYTQQIKKHEAGEFLKRNL 262

Query: 319 DSQCNPQQESWTSYFDSLPQESS-----ASILARRIAYTISNMIGTDTIFSNGKKRVIQA 373
           +   N   ES+ + F    +         +  AR +   I  +    +  +  K++    
Sbjct: 263 EEFPNELPESFFNTFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQITVEKEK---- 318

Query: 374 KDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQED 433
           ++ +VL  +    P++  + + +KN     V     F L        + A+     +   
Sbjct: 319 ENAVVLCNEALLLPVLHSIPQEVKN-----VNITMGFPLAQTPVYSFINAVMELQTNGYR 373

Query: 434 DL-------SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                    +   +LK P                     + +  + +      K    + 
Sbjct: 374 SDTGRFTYEAVSAILKHPY------TQQLSSHAGPLERELTQTNRFYPLPSELKQDDFLT 427

Query: 487 YIHELIHIAQFCSPHDF-----FTLILGAKKGRQQFISRFGNEV----IDVLDEFLNFTL 537
            +    +  +    +        + I   +       ++   E        ++   +   
Sbjct: 428 TLFTPRNGIKELCDYLIELIKNISTIYRKEGEYNDIFNQLYRESLFQSHTKINRLYSLIE 487

Query: 538 RNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
             E      +L+ LI+++                 +++M V   + L+   + ++     
Sbjct: 488 SGELNIRTDTLKRLITKVLTSSNIPFH--GEPAIGMQVMGVLETRNLDFRNLIILSLNEG 545

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                      I  +L    G+     ++              +   + E   LLY    
Sbjct: 546 QLPKSGGDSSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAENITLLY---- 595

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
                       NTS++  +       M+         + +  L    +           
Sbjct: 596 ------------NTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEIRVEK 643

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                   E    I +  D       + SP   +      L        G    + + ++
Sbjct: 644 TP------EVLRRIYRAYDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAE 697

Query: 777 NQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSI-- 828
             +   G I H   Q+    +    +  +K  +      + KL     + +K  L  +  
Sbjct: 698 IDSALFGTIFHLSAQLAYTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAFKKELFKVSP 757

Query: 829 --------TRLLEN----PMMTTAMSCDSY----------SEVSVSGKINCPKKDIIIS- 865
                    +L+ +      +   +  D             +VS    I   +    +  
Sbjct: 758 EEKPEYNGIQLINSKVIVSYLKQLLRNDLQYTPFEMVAMEKKVSEEITIQTGQGPFTLRL 817

Query: 866 -GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEKILKDSYP 916
            G ID++   +  + I +YKT      P  IE +         +I Q  +Y  I+     
Sbjct: 818 GGTIDRMDAKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQS 877

Query: 917 NKSLVCLLIY 926
              +   L+Y
Sbjct: 878 LM-VAPALLY 886


>gi|120437694|ref|YP_863380.1| hypothetical protein GFO_3373 [Gramella forsetii KT0803]
 gi|117579844|emb|CAL68313.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 927

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 85/851 (9%), Positives = 224/851 (26%), Gaps = 110/851 (12%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             +  +  +  +   +T +           YE+  ++N + DFE  I    +L+   +  
Sbjct: 64  IEEFTEVVSGLESIDNTSSLF----EFYDVYEDLTEENSLEDFETFITWAQNLIHDFNEI 119

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                      N++    +QD +   W +    T+          +    +     K  +
Sbjct: 120 DRYLIDYKPFFNYLAG--IQDINH--WYLKDEKTDLIKRYLKFWKNLPGFYEALSRK--L 173

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP---EN 283
            S +      + R+   N        ++  +           + L   +++         
Sbjct: 174 LSKNQGYQGLIYRKAAENITDYAATHKQKHVFI-------GFNALNASEQLIIQNLLETK 226

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
              +  D   T     +    +     ++      D++ N   E++             +
Sbjct: 227 LAEIYWDLDKTFYKDPAHGASIFIRDYFKNWKYYQDNEPNELSENFGKEKQFELIGVPKN 286

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
           I   +    I   + +  + +       +   + VL         +    + L       
Sbjct: 287 IGQAKYLGEILTNLNSAQLENTAIVLGEEELLLPVL-------NSLPEEIQDLNITMGFP 339

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHE 462
           V       L + L    +                + ++  P FN   ++   ++  + + 
Sbjct: 340 VKNAPINSLFESLFQIHINK-----TDTYYYKDVISIINHPSFNPILKNYAEELIIKINS 394

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
              +Y   +K  +   ++ + +I       + A      D   +I   K   ++   +  
Sbjct: 395 ENLIYLEPKKIISSFPTEIKELITACFNPKNDAVSIFISDVQQIIQNLKTHLKKEEDKIA 454

Query: 523 NEVIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHT 579
            E +       N      +      +++ L     +   T            +++M +  
Sbjct: 455 LEFLYHFHILFNKLQNLNETYPHLKTIKSLYGFYREMVGTETLDFQGRPFQGLQLMGMLE 514

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           ++ L+   V +      V          I   L  +  +P +                  
Sbjct: 515 SRALDFETVIITSLNEGVLPAGKSDNSFIPYDLKQEYKLPTY------------------ 556

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
            +     Y    Y  + RA + + +  ++         +  +   +         ++K+ 
Sbjct: 557 -REKDAVYTYHFYRLLQRAKN-VYLLYNTEADGLNSGEKSRFITQLEIENLKTHTLRKLL 614

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
           ++  +        E          L            + +    FSP          L+ 
Sbjct: 615 ISPEVPGINKNLKEVRKTPEIMDKL------------KSLANSGFSPSALTTYIRNPLDF 662

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSY--------- 808
                 G  + E +         G ++H  L+ +      +   +  I  +         
Sbjct: 663 YHQYVLGVRDQEEVEETVAFNTLGTVVHDALENLYKPYEGKLITEEIIQGFIKIADREIA 722

Query: 809 -----------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
                        K   L   +  K  L +  R      +      +    + +   +  
Sbjct: 723 NEFSKTYSKIPLEKGKNLLIFEVAKRYLHNFLRF----ELKRLKQGEEIQIIQIEKDLKV 778

Query: 858 PKK------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE-----HIPYTH-----I 901
                     + + G++D+   S+    I +YKT     + +       I   +      
Sbjct: 779 KLPIEKLPFSVYLRGKVDRFENSKSTPRIIDYKTGKVESRNLNVTDWGEITKDYDNYSKS 838

Query: 902 AQLSIYEKILK 912
            Q+  Y  ++ 
Sbjct: 839 FQVLTYASLIA 849


>gi|160888167|ref|ZP_02069170.1| hypothetical protein BACUNI_00575 [Bacteroides uniformis ATCC 8492]
 gi|156862302|gb|EDO55733.1| hypothetical protein BACUNI_00575 [Bacteroides uniformis ATCC 8492]
          Length = 773

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 61/491 (12%), Positives = 134/491 (27%), Gaps = 83/491 (16%)

Query: 468 EYIQKFANCGISKFQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
           +   +      +    +  Y+ EL   +A           I      R+     +     
Sbjct: 236 DAFLEQVFTPQNGIAALCSYLTELLREVAVLYRQEKDVEDIFNQL-YRESLFKSYTL--- 291

Query: 527 DVLDEFLNFTLRNE--QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             ++  L+     E       +L+ L++ L                 +++M V   + L+
Sbjct: 292 --VNRLLSLIETGELSSVRTDTLKRLLNRLLTSANIPFH--GEPAIGMQVMGVLETRNLD 347

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              + ++                I  +L    G+     ++              +   +
Sbjct: 348 FRNLIMLSLNEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQR 401

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            E   LLY                N S++  +       M+     +   +    L    
Sbjct: 402 AENVTLLY----------------NISSDGLNRGEMSRFMLQFQVESPHNISLEYLEAGQ 445

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
           +  +    E           E  + +    +  + PK  FSP   +      L       
Sbjct: 446 SPQQAREIEIHKTP------EMLQQMFDAYNIHQRPKAFFSPSALNAYLDCRLKFYYRYV 499

Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKL----- 815
            G    + + ++  +   G I H+  ++    +       RK+ +      + +L     
Sbjct: 500 AGLKAPDEVSAEIDSTLFGTIFHRSAELVYNELTANGREIRKDDLEQLLKDDVRLQAYVD 559

Query: 816 -----------------------WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS 852
                                    +K   + L  + R   +             +V   
Sbjct: 560 NAFKEKFFHVPLTEQPEYNGTQLIHSKVIASYLRQLLR--NDLQYAPFRMEGMEQDVREM 617

Query: 853 GKINCPKKDIIIS--GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIA 902
            +I+ P+  + +   G ID++      + I +YKT      P+ IE +         +I 
Sbjct: 618 MEIDTPQGKLALQIGGTIDRLDSKGDTLRIVDYKTGGTPKTPENIEQLFTPADNRPNYIF 677

Query: 903 QLSIYEKILKD 913
           Q  +Y  IL  
Sbjct: 678 QTFLYAAILCR 688


>gi|241895872|ref|ZP_04783168.1| ATP-dependent deoxyribonuclease, subunit B [Weissella
            paramesenteroides ATCC 33313]
 gi|241870915|gb|EER74666.1| ATP-dependent deoxyribonuclease, subunit B [Weissella
            paramesenteroides ATCC 33313]
          Length = 1188

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 79/737 (10%), Positives = 200/737 (27%), Gaps = 132/737 (17%)

Query: 309  QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
              W +   Q   + +   +     + +  +      +AR I   ++        +    +
Sbjct: 300  DFWIKYAQQGIIRDSYDADDAIEIWQTHTRYQEVEQMARLIRQEVAAGKHRYRDYLLMTR 359

Query: 369  RVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK-DLMALGR- 426
             + Q ++I+  V  R + P+   L R         V   D+ +         D+M L + 
Sbjct: 360  DLGQYENIMPAVFARYEIPIFMDLDR--PMSAHPLVAFLDKLLHLAPAYTMTDVMGLLKT 417

Query: 427  --------FILSQEDDLSFVC--MLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANC 476
                     +    + L+     +L   +  +   D       R    +  E  ++    
Sbjct: 418  ELLIPDGVLLADYREALAETENYVLAKNIAGWQWTDKTPWQYDRQALTSDDEVTRERVAS 477

Query: 477  GISKFQHVIKYIHE-----LIHIAQFCSPHDFFTLI---LGAKKGRQQFISRFG------ 522
              ++   +   I +     L H+ Q  +  +    +   +     +++ I+         
Sbjct: 478  KDAQLAMIHDQISQTVAPFLHHLQQAPTAREMARELYNFITQIGIQKRLINWRDNAIEQG 537

Query: 523  -----NEVIDVLDEFLNFTLRNEQ---NSYSSLQELIS-ELEQYPPTIKRAHSANHNEVR 573
                  +   V   F++      Q   +   +L+ L       +         A  ++V 
Sbjct: 538  DLWSAQQPEQVWRVFISILDDFVQVFDSEVMTLEVLQDVFTAAFDSAKYAGIPATMDQVH 597

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I      +      V +    +         K  +           +            +
Sbjct: 598  ISESGIVQRTGYETVIVFGATNHNLPAVTRIKAILHDGDRAILQPALPD----------N 647

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
              +K   +    + + L+Y  M  A  +LI    ++  +  +        +         
Sbjct: 648  VFLKETSEQQMAQESLLMYRAMMVADQRLIWTYATSDGDGSQQPSTYVTRIQKQFQLPLV 707

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET---------------IKQLMDEQK 738
            +   +    S + D+++    ST         + +                I+Q+     
Sbjct: 708  QFDALPDPMSHHVDDYVGTPTSTIAQIIIANRQAKQRGTVDGQLSAAWRNLIQQVQKIAP 767

Query: 739  IPKKLFSPIKNDINEPYILNP---------------STIDTKGKTNLESLLS-------- 775
               +      +  NEP  L P               S +++  +   E  L         
Sbjct: 768  YQLQHLLGSLHYQNEPEKLQPVLVNTLFGHDLKASISRLESYSRNPYEFFLQYGLRLQER 827

Query: 776  ---DNQTFNRGLIIHKLLQVI---------------FTLPEHKRKNFITSYCTKNAKLWP 817
                     +G ++H +L+ +                    H  ++ +    T +   + 
Sbjct: 828  QVLQLTPAEKGTLMHAMLEQLFQTLVTKQQVLGALTDDQLRHLEQDILQGLLTSDDPTYD 887

Query: 818  --------AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI------------NC 857
                        + L + +   + +      +    ++ + V                + 
Sbjct: 888  IFNSSSRMRFLTQQLAIQVHETMISMKRGQLLDGGVHT-IGVEAGFGLPQSQLKPVEYDM 946

Query: 858  PKKDIIISGRIDQ--ISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL-- 911
            P   + + G++D+  +  +     + I +YK+   V    +        QL  Y   +  
Sbjct: 947  PFGRVKVRGKVDRYDLVETNAGNFLTIVDYKSSKRVFDYSKAYA-GLELQLMTYWTAMLM 1005

Query: 912  -KDSYPNKSLVCLLIYV 927
             KD  P   +   L + 
Sbjct: 1006 NKDVLPAGEMGGALFWT 1022


>gi|261405599|ref|YP_003241840.1| ATP-dependent nuclease subunit B [Paenibacillus sp. Y412MC10]
 gi|261282062|gb|ACX64033.1| ATP-dependent nuclease subunit B [Paenibacillus sp. Y412MC10]
          Length = 1176

 Score = 65.7 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 81/750 (10%), Positives = 178/750 (23%), Gaps = 143/750 (19%)

Query: 286  GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
            GL  +          R  +   +   E+   +      P +   T+   +  ++      
Sbjct: 270  GLEAEHRILHPDVLPRFQESPMLAHLERGYDRKKRWAEPDEGPDTASSPNRGRKGLLLHA 329

Query: 346  ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
            A      I   +    +    ++   + +++ V VR   D      L   L  +Y +   
Sbjct: 330  ASHRRAEIEGALRE--MLRLAQEEGARYREMAVFVRNMGD---YEHLMGPLFREYGVPYF 384

Query: 406  GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF--------NFSEDDIFKIC 457
             + +     H  ++ + +    I  +         +K+ L             D +    
Sbjct: 385  LDQKRSELHHPLVEFIRSALDVIGRRWRYEDVFRCVKTDLLLPLDGSLTREDMDRLENHV 444

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIH--------ELIHIAQFCSPHDF------ 503
                   T +   + +        +     I         E          H F      
Sbjct: 445  LASGIQGTRWTDGRPWKGVPSLSLEEGESEIRNQDGMAAIEYARKVITEPLHAFEKRMKK 504

Query: 504  ----------FTLILGAKKG--------RQQFISRFGNEVIDVLDE------FLNFTLRN 539
                         +L             R    +    E  +           L+  +  
Sbjct: 505  AASATDQSTAVYRLLEECAVPEKLELLSRAALDAGRPEEAREHRQVWGAVLGLLDQIVEM 564

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                  S +     L      +K A      ++V I ++   +       FL+     V 
Sbjct: 565  MGAEKLSTELFTGVLGTGLTEMKMALVPPSLDQVLIGSMDRTRTGGVKYAFLLGINDGVL 624

Query: 599  SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
              +             D GI     +    +  +       +     +   L+Y  +T A
Sbjct: 625  PAQFQ-----------DDGILTEPERVHLEDRGLELAPSISR--RLLDERFLIYNALTSA 671

Query: 659  SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
            S QL +   +     K          +   F  +E     +     +  E   Y      
Sbjct: 672  SKQLWVSYPAADDEGKPLLPSEVVRHLKLMFQLEEEPLFPRPHAGQSALEQEGYAVRPDK 731

Query: 719  PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--------------------- 757
                   R    +   +   +   +++           L                     
Sbjct: 732  TLAYLAGRLRDWRNGEEIPDLWWHVYNWYAEQPGLRPRLTTMLSSLSYRNEARPLKLETS 791

Query: 758  ----------NPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLL------ 790
                      + S ++           S             Q  + G + H  L      
Sbjct: 792  RQLYGTKLRTSVSRMERFVACPFSHFASHGLKLRERQLYRLQAPDIGQLFHAALSSMAVK 851

Query: 791  ---QV--IFTLPEHKRKNFITSYCTKNAKLWPAKEY--KNLLLSITRLLENPMMTT--AM 841
               Q      L   +      +   + A +   +          I+R L+N +      +
Sbjct: 852  FQSQHRSWGDLTAEECLREAEATVDRLAPMLQGEILLSSKRYGYISRKLKNIVGRASVIL 911

Query: 842  SCDSYS--------EVSV-------SGKINCPKKDII-ISGRIDQISISQQN----IFIF 881
               +          E+               P    + I GRID++ +++      + + 
Sbjct: 912  GEQARRGKFEPIGLELDFGPGKPLPPLAFELPNGTKMEIVGRIDRVDMARGEHGIMLRVI 971

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            +YK+       +  + Y    Q+  Y  +L
Sbjct: 972  DYKSSQ-KDLRLHEVYYGLSLQMLTYLDVL 1000


>gi|296107860|ref|YP_003619561.1| RecB family exonuclease, hypothetical [Legionella pneumophila
           2300/99 Alcoy]
 gi|295649762|gb|ADG25609.1| RecB family exonuclease, hypothetical [Legionella pneumophila
           2300/99 Alcoy]
          Length = 831

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 63/562 (11%), Positives = 148/562 (26%), Gaps = 83/562 (14%)

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
           ++ ++  + R            +    L+    I   +       +  ++     +L+SP
Sbjct: 236 ESSVLQRILRDCFEPNL--FNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSP 293

Query: 445 LFNFSEDDIFKICTQRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFC 498
               ++D+  +      E++ + +         +       K   ++K ++         
Sbjct: 294 YLGKAKDEFLQRSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNMNFYPEKTTLD 353

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ----ELISEL 554
              + F   L        ++    +E     + F        Q S  S      E    L
Sbjct: 354 EWIELFQERLNGIGFPGDYV--LNSEDYQCFNRFTMIFDEFRQLSLISSHLTKTEAFETL 411

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +Q           +++ ++I+ +  A G E   ++++    +    +      I   L  
Sbjct: 412 KQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLTDRCLPQQTRLSPFIPFELQR 471

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           + G+P  IP        +    + L++               R S + +        +  
Sbjct: 472 ELGMPHSIPAR-----ELQYAKQILQRLQ-------------RGSMETVFSYPQFDDDTP 513

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                             +    ++      ++ +             P++ +E+I    
Sbjct: 514 NLPCSLIIHYPAYLSRPADNKTNVQSCLVPLEENY-----------EVPVKPDESISGGT 562

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ--- 791
                  K                           +           +G +IHK+L+   
Sbjct: 563 SLLSNQAKCPFKALAQHRL------------KANPVLKTTDGMDDKEKGQLIHKILELLW 610

Query: 792 -------VIFTLPEHKRKNFITSYCT------------KNAKLWPAKEYKNLLLSITRLL 832
                   +  L   + + FI                     L    EY  L   I   L
Sbjct: 611 QRLENQEHLIKLKPAELERFIDQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYL 670

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
           E              E   +  IN    D  +  R+D++       ++ +YK+     + 
Sbjct: 671 EWEKQRPPFKITGLEE---NHSINLAGLDFKV--RVDRLDEVGNKQWVIDYKSTLPGGKP 725

Query: 893 IEHIPYTHIAQLSIYEKILKDS 914
                     QL +Y  + +  
Sbjct: 726 WNEERP-MEPQLLLYALLNEQI 746


>gi|325298710|ref|YP_004258627.1| ATP-dependent DNA helicase, RecQ family [Bacteroides salanitronis DSM
            18170]
 gi|324318263|gb|ADY36154.1| ATP-dependent DNA helicase, RecQ family [Bacteroides salanitronis DSM
            18170]
          Length = 1644

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            ++IDE QD    ++  + +L         TH+    + AVGD+ Q+IY F G++   + R
Sbjct: 1217 LVIDEAQDMGTEEYAFVMALM--------THNEEMRVIAVGDDDQNIYEFRGSDSNYMYR 1268

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
                            + +E+  ++RS    +   +         
Sbjct: 1269 L---------AQEAGSTFVEMTENYRSARQPVNFANGFLKTINKR 1304


>gi|218532780|ref|YP_002423596.1| double-strand break repair protein AddB [Methylobacterium
           chloromethanicum CM4]
 gi|218525083|gb|ACK85668.1| double-strand break repair protein AddB [Methylobacterium
           chloromethanicum CM4]
          Length = 1047

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 55/460 (11%), Positives = 118/460 (25%), Gaps = 54/460 (11%)

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQ-- 516
           QR+ TE V    ++         + ++  +   +   +     +   L+  A   R+   
Sbjct: 498 QRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDAFRTDLQPEIGNLVALAAGHREACE 557

Query: 517 ---------FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL---EQYPPTIKRA 564
                          +  +D LD   +     EQ          +          T+  A
Sbjct: 558 RMMGGAEESDADEADDPSLDTLDGLFDDLESAEQEELPGRFSDYAAFFTALARDRTVACA 617

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             + H  +RI+    A+ L    + L      V+  +      +   +  D G+     +
Sbjct: 618 QRSAHPRLRILGPLEARLLSVDRIVLGGLDETVWPVRQTTDAFLNRPMRGDVGLSPPERR 677

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                +     +                  +TRA+ +           E      + +  
Sbjct: 678 IGQAAHDFVQGLGTHDA------------VVTRAAKR-----------EGSPTVPSRFLQ 714

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
              +F  D             +      +     P                +  +  +  
Sbjct: 715 RLRAFGGDAVWADAIARGQRLRGLAARLDRGQEAPPPRLKR-----PAPKPDPALFPERL 769

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHK 800
           S  + +       +       G   LE +        RG +IHK+L    Q         
Sbjct: 770 SVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSQAHPGALPAD 829

Query: 801 RKNFITSY-------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
            +  + +                 A+ +          LE            ++E S   
Sbjct: 830 AETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLHTIHAERSGKV 889

Query: 854 KINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQE 892
            I   ++   +S R D+I + +  +  I ++KT       
Sbjct: 890 TIPLGERTFTLSARADRIEARADGSYCIVDFKTGTPPSNR 929


>gi|229010443|ref|ZP_04167647.1| UvrD/REP helicase [Bacillus mycoides DSM 2048]
 gi|228750863|gb|EEM00685.1| UvrD/REP helicase [Bacillus mycoides DSM 2048]
          Length = 778

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +++   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DEICSLTVNMLDEGKLHYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAAKMTVLGDFNQAIFA-HASEAVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRYLVPEGKNINAFERDGEKP 638


>gi|94496242|ref|ZP_01302820.1| possible ATP-dependent exodeoxyribonuclease (subunit A)
           [Sphingomonas sp. SKA58]
 gi|94424421|gb|EAT09444.1| possible ATP-dependent exodeoxyribonuclease (subunit A)
           [Sphingomonas sp. SKA58]
          Length = 213

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 63/212 (29%), Gaps = 27/212 (12%)

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSD------NQTFNRGLIIHKLLQVIFTLP 797
            +P +++  +  +L P  ++    +       +           RGLI+HKLL+ + T  
Sbjct: 6   LAPSRDESADGPVLTPEAVEIWAASEAGQPDDEAVRPNVQGGRERGLILHKLLEEVLTGE 65

Query: 798 EHKRKNFITSYCTKNAKLWPAKEY---------KNLLLSITRLLENPMMTTAMSCDSYSE 848
                  ++                          L   + R L  P +          E
Sbjct: 66  TPDDAGALSERARALIGEIGRPVMADPSQGLSPDELAGCVVRTLALPEIAEL-RPTLVPE 124

Query: 849 VSVSGKINCPKKDIIISGRIDQISISQQNI--FIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           ++V   ++    +    G  D  S         + ++K+              + AQ+  
Sbjct: 125 LAVYAAVDVDGVEQATVGIADATSFDNAGRPTVVIDWKSDVEPT---AETLNLYRAQVLA 181

Query: 907 YEKILKDSYPNKSLVCLLIYVSEPKVFIIPQN 938
           Y           +   L+++V+  +V  +   
Sbjct: 182 Y------LDMTGTDRGLIVFVTTGQVIAVTPT 207


>gi|313773652|gb|EFS39618.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
          Length = 392

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 85/309 (27%), Gaps = 36/309 (11%)

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            +        + F+           L   Y +  + +  + F +        L +    A
Sbjct: 72  EEYLRARRPGRGFRLNRRDRDAVWTLVKKYRDDSRISGTISFPEAAAIAAQYLTRHSPLA 131

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
                     +H+L+DE QD +   W +IRSL  +          P  +F   D  Q IY
Sbjct: 132 ----------DHVLVDEGQDLTPAHWRLIRSLVPE---------GPNDIFIAEDSHQRIY 172

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
                  +                  +     L L++R+TA IL     V    E    +
Sbjct: 173 GHRLVLSRY-------------GIMTRGRSRRLTLNYRTTAQILRWSTHV---LEGGFYV 216

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
             D     +    R  + G   +     +  +      +       D   + ++  +  R
Sbjct: 217 DLDGDDDDKLSGYRSARRGPDVIAHPCTTITEEFDYLAKVVGQWAKDRQSETTAVLVRDR 276

Query: 348 RIAYTISN-MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
                + + +              I     +V+   R      + +  F  +   I +  
Sbjct: 277 SQRERVVDALHERGVQTRAVGHGSIPPGAPVVMTMHRAKGIEFSKVFLFGVSSRSIPMGI 336

Query: 407 NDRFILTDH 415
            D     D 
Sbjct: 337 KDYDFDKDE 345


>gi|260463223|ref|ZP_05811425.1| double-strand break repair protein AddB [Mesorhizobium
           opportunistum WSM2075]
 gi|259031073|gb|EEW32347.1| double-strand break repair protein AddB [Mesorhizobium
           opportunistum WSM2075]
          Length = 1044

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 61/620 (9%), Positives = 153/620 (24%), Gaps = 64/620 (10%)

Query: 309 QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI-SNMIGTDTIFSNGK 367
            +     +    +      +     +   Q ++     R +A  +   +     +  +  
Sbjct: 357 DVTLLEAASERDEAVAIAVALKRAVEEPGQRAALVTGDRALARRVSVELKRFGVVADDSG 416

Query: 368 KRVIQAKDILVLVRKRKDT--PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG 425
              +       L+R   +        +       + +  +G  R  +     + +L+A  
Sbjct: 417 GTPLANSPAASLLRLALEAVFRPGDPVGLLSLLKHPLLCLGLGRADVRHAAELVELVA-L 475

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
           R    + D  S   + ++ L  F E         R     +     + A   + +    +
Sbjct: 476 RGGTGRPDIASLPDLFETRLTGFDEGSRPPFWVAR-----LTVRAIESARDLLERLNRAL 530

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN----EVIDVLDEFLNFTLRNEQ 541
             +      A           ++  +   +      G     +  + L E L   +    
Sbjct: 531 APLAAFRGQATADLAALVEASVVALEVLGRAADGGLGELYAGDAGEKLAELLRGLVAAPA 590

Query: 542 NSYSSLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               +  E    ++    P   +        + I     A+  +   + +      V+  
Sbjct: 591 TLSFAANEWPDVMDALIAPETVKPAQGTDRNIAIWGALEARLQDVDTLVIGGLNEGVWPR 650

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K      +   +     +     +     +     +   K                    
Sbjct: 651 KPESDRFMSRLMKTGIDLEPPERRIGLAAHDFQMAMGAGK-------------------- 690

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             ++   S  S +  +    W   +     ND+     +  + +                
Sbjct: 691 --VLLARSARSGDAPAVPSRWLQRLLTFIGNDQAATLRRRGDELLAWARALDTGPKQDFA 748

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
             P  +     +         +        +    IL        G   LE L+ D    
Sbjct: 749 PRPQPKPPLSVRPTHFSVTEIETLRRDPYAVYARRIL--------GLMPLEPLIRDPGAA 800

Query: 781 NRGLIIHKLLQVIFTLPEHKR-KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            RG + H +L +  +     R  + +          +        + ++      P    
Sbjct: 801 ERGTLFHAILHLFSSSVADPRAPDALAGLIAAGRACFAEAALPPDVEAVW----WPRFEK 856

Query: 840 AMSCDSYSEV------------SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTH 886
             +     E               +GK    +  + +SG  D++ +       I +YKT 
Sbjct: 857 LAANIVEWERTRADAVIRRHAEERAGKTVVGQSGVTLSGYADRVDLLAGGMADILDYKTG 916

Query: 887 HHVPQEIEHIPYTHIAQLSI 906
               +   H       QL++
Sbjct: 917 SSPSKAQAHT--LLAPQLAL 934


>gi|167910327|ref|ZP_02497418.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           112]
          Length = 246

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 46/180 (25%), Gaps = 40/180 (22%)

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           L+  +    G  +H+LL++                  +          + L   +TRL+ 
Sbjct: 6   LAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVA 65

Query: 834 NP---------MMTTAMSCDSYSEVSVSGKINCPKKDII--------------------- 863
           +           +         +E+           + +                     
Sbjct: 66  DLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAG 125

Query: 864 -ISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            + G ID I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 126 FVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 185


>gi|325298045|ref|YP_004257962.1| hypothetical protein Bacsa_0897 [Bacteroides salanitronis DSM
           18170]
 gi|324317598|gb|ADY35489.1| hypothetical protein Bacsa_0897 [Bacteroides salanitronis DSM
           18170]
          Length = 957

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/589 (11%), Positives = 151/589 (25%), Gaps = 98/589 (16%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
           +     F L+   A     AL     S  D  +             ++ +  +       
Sbjct: 336 INITMGFPLSQTPAYSFANALLELHTSGYDSRNG--------RYHFKETVSLLKHAYTRL 387

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA-KKGRQQFISRFG 522
            +    + +      ++F  +   + +   +     P      +     K  QQ   R+ 
Sbjct: 388 LSSNAEMLEKELTKNNRFYPLPSELEKDEALELLFKPCHTNEALCNTLSKALQQIAMRYQ 447

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-----------------H 565
            +  D  D F          +++      + LE     +K                   H
Sbjct: 448 EQKTDEKDAFDQLYREALFKAFTLTNRFHTLLESKELDVKPDTFQRLLTRVMASSSIPFH 507

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                 +++M V   + L+   + ++                I  +L    G+     + 
Sbjct: 508 GEPAIGLQVMGVLETRNLDFRHLIMLSVNEGQLPKTGSDASFIPYNLRKAFGMTTIDHK- 566

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                I        +   + E   L++   T                +  +       M+
Sbjct: 567 -----IAVYAYYFYRLLQRTEKATLVFNTAT----------------DGINRGEMSRFML 605

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                    +++I+L  + +                  L +        D +  PK + S
Sbjct: 606 QYLIEWGYPIRRIRLETAQSPQNTAPICIEKDSDVLLRLRQ------SFDLKYNPKAVLS 659

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL--------- 796
           P   +      L             + +  +      G I H   + I+           
Sbjct: 660 PSALNTYLDCPLKFYYKYVARLNTPDEVSPEIDAAKFGSIFHYAAEHIYKDLTAHGKVIN 719

Query: 797 ---------PEHKRKNFITSYCTKNAKLWPAKEYKNL--LLSITRLLENPMMTTAMSCDS 845
                     E + + ++ +   +       +E      +  I   +    +   ++ D 
Sbjct: 720 KETLEKLLKDETRLQTYVDNGFKELFFHLSPEEKPEYNGIQLINSAVILRYIKQLLNKDI 779

Query: 846 Y--------SEVSVSGKINCPKKDIIIS----GRIDQISISQQNIFIFEYKTHHHVPQ-- 891
                    SE  V   I       +      G ID+I +      I +YKT  H     
Sbjct: 780 KYAPFTFIGSEQPVQEDIEIHSTTGVFQSRIGGTIDRIDMKDNIFRIVDYKTGGHADTPP 839

Query: 892 ------EIEHIPYTHIAQLSIYE----KILKDSYPNKSLVCLLIYVSEP 930
                         ++ Q  +Y     ++L+  +  + +   L+Y+ + 
Sbjct: 840 SIQSLFTPSAKRSNYVFQTFLYAAIVCRMLQQKHDERQVAPSLLYIHQA 888


>gi|291513844|emb|CBK63054.1| RecB family exonuclease [Alistipes shahii WAL 8301]
          Length = 946

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 64/580 (11%), Positives = 137/580 (23%), Gaps = 92/580 (15%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
           V     + L   LA   +  L      +    +      +                R   
Sbjct: 338 VNVTMGYPLRASLAYTFVERLVELQAHRRTKGAGCTFYHADAVGILAHPYVADSDARETR 397

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
               E +++      + +      +  +   A      +    +L       +      +
Sbjct: 398 AMQDEIVRERRISVDAAWLGRNDLLRMIFSPAAAWR--ELSDWLLRVVAAVARTPYEGDD 455

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISEL----------EQYPPTIKRAHSANHNEVR 573
               V  EFL           +SL E   EL                           V+
Sbjct: 456 RRQRV--EFLAVISEEISKLRNSLDECDIELTTEVYTSLLRRHLQTVRIPYEGEPLEGVQ 513

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +M +   + L+   V L+      F   H+ +   +P               +       
Sbjct: 514 VMGILETRNLDFENVVLLSMNDDNFPGNHMAQASFVPYNLRAAYGLPTPEHHEGVYAYY- 572

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                             Y  + RA    ++              R  Y +      + E
Sbjct: 573 -----------------FYRLVQRARRVWMLYCSHADDKSTGEPSRYIYQL------DYE 609

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
               ++             +      +   ++R         +  +    F         
Sbjct: 610 SGFPVRKVEVGVDVNLAETDPIEVAKDEGIMQRLGRFTDPESKATLSPTAFFRYVACPLR 669

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI------FTLPEHKRKNFIT- 806
            Y  + + +    +        +      G I+H  +Q +         P    +  I  
Sbjct: 670 FYFHSVARLQADDEI-----AEEVDAPMFGTILHAAVQKLYARIVGEAHPGETLRAMIRT 724

Query: 807 --------SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS----------- 847
                   +   +N    PA    +   ++   L   ++T  +                 
Sbjct: 725 GEIAAAVEAAINENYLQDPAATTDDYTGNLL--LVKDIVTRYLRGGVMPYDAAHDGFTVT 782

Query: 848 --EVSVSGKINCPKKDIII----SGRIDQI-SISQQNIFIFEYKTH--HHVPQEIEHIPY 898
             E  V+   +       +    +G  D+I ++    + + +YKT   H     +E +  
Sbjct: 783 GLEQEVAYGFDFTAAGRPLCMKFAGIADRIDALDDGTLRVVDYKTGAPHLEFAGMESLFR 842

Query: 899 THIAQ-----LS--IYEKILKDSYPNKSLVC--LLIYVSE 929
               Q     L   +Y  +L   Y  + +     L YV  
Sbjct: 843 GEGKQRLSNILQTLLYAMML---YRTRGVDAEPALYYVRA 879


>gi|315645968|ref|ZP_07899089.1| ATP-dependent nuclease subunit B [Paenibacillus vortex V453]
 gi|315278729|gb|EFU42043.1| ATP-dependent nuclease subunit B [Paenibacillus vortex V453]
          Length = 1176

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 80/757 (10%), Positives = 183/757 (24%), Gaps = 143/757 (18%)

Query: 279  SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                +  G+  +          R      +   E+   +         +      ++  +
Sbjct: 263  KGIADELGMDAEHHMLHPEVPPRFQDSPVLAHLERGYDRKKRWTGAYGDGNHEDKENGRR 322

Query: 339  ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
            E      A      I   +    +    ++   + +++ V VR   D      L   L  
Sbjct: 323  EGLLLHAASHRRAEIEGALRE--MLRLAQEEGARFREMAVFVRNMGD---YEHLVGPLFK 377

Query: 399  DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICT 458
            +Y I    + +     H  ++ + +    I  +         +K+ L    +  + +   
Sbjct: 378  EYDIPYFLDQKRSELHHPLVEFIRSALDIIGRRWRYEDVFRCVKTDLLLPLDGSLNREDM 437

Query: 459  QRHETETVYEYIQKFANCGISKFQ-----------------HVIKYIHELIH-------- 493
             R E   +   I  +       ++                   ++ I             
Sbjct: 438  DRLENHVLASGIHGYRWTDGRPWKGIPSLSLEDGENEVLNLDGMQAIEYARRVIAEPLHA 497

Query: 494  -------IAQFCSPHDFFTLILGAKKGRQQFI--------------SRFGNEVIDVLDEF 532
                    A           +L      ++                +R   +V   + + 
Sbjct: 498  FEKRMKKAATAMDQSTAVYRLLEECDVPEKLELLSRAALDAGRPEEAREHRQVWGAVLDL 557

Query: 533  LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
            L+  +        S +     L+     +K A      ++V I ++   +       FL+
Sbjct: 558  LDQIVEMMGAEKLSTELFTGVLDTGLTEMKMALVPPSLDQVLIGSMDRTRTGGVKYAFLL 617

Query: 592  DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                 V   +             D GI     +    +  +       +     +   L+
Sbjct: 618  GINDGVLPAQFQ-----------DDGILTEPERLHLEDRGLELAPSISR--RLLDERFLI 664

Query: 652  YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
            Y  +T AS+QL +   +     K          +   F  DE     +     +  E   
Sbjct: 665  YNALTSASEQLWVSYPAADDEGKTLLPSEVIRHLKLMFQIDETPLYPRPHAGQSVPEQER 724

Query: 712  YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-------------- 757
            Y             R    +   D   I   +++           L              
Sbjct: 725  YAARPDKTLAYLTGRLRDWRNGEDIPHIWWHMYNWFAQKPEFRPRLESMLSSLSYRNEAQ 784

Query: 758  -----------------NPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKL 789
                             + S ++           S             Q  + G + H  
Sbjct: 785  PLKEETSRQLYGTKLRTSVSRMERFVACPFSHFASHGLKLRERQLYRLQAPDIGQLFHAA 844

Query: 790  LQVIF---TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT----------RLLENPM 836
            L  +            +     C + A+    +    L   I           R L+N +
Sbjct: 845  LSSMAVKFQSEHRSWGDLSADECLREAEATVDRLAPMLQGEILLSSKRYGYISRKLKNIV 904

Query: 837  MTT--AMSCDSYS--------EVSV-------SGKINCPKK-DIIISGRIDQISISQQN- 877
                  +   +          E+                    + + GRID++ +++   
Sbjct: 905  GRASVILGEQARRGKFEPIGLELDFGPGKPLPPLTFELLNGVKMEVVGRIDRVDMARGEH 964

Query: 878  ---IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
               + + +YK+       +  + Y    Q+  Y  +L
Sbjct: 965  GIMLRVIDYKSSQ-KDLRLHEVYYGLSLQMLTYLDVL 1000


>gi|55378952|ref|YP_136802.1| repair helicase [Haloarcula marismortui ATCC 43049]
 gi|55231677|gb|AAV47096.1| repair helicase [Haloarcula marismortui ATCC 43049]
          Length = 613

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 57/162 (35%), Gaps = 34/162 (20%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   +   K +N +  F D++                   +   +++++IDE QD + +Q
Sbjct: 190 VIRGWRTYKGENDLTGFADMLERVAQ------------RSLLPNVDYLIIDEFQDITTLQ 237

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           ++V                    +   GD+ Q +Y++ GA+P  +L              
Sbjct: 238 YDVYDEWKPHME----------RVLIAGDDDQVVYAWQGADPDLLLE------------E 275

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                  LP S+R  + IL VV++     E  Q    +    
Sbjct: 276 VVTQDEVLPNSYRLPSRILNVVNREVRHIEKRQEKDLNPRKE 317



 Score = 38.0 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 16/98 (16%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLV-DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           + + VR+ T+H+AKG E+  VF+  D   +V              +              
Sbjct: 491 DADRVRVGTIHSAKGREADHVFVATDLTEKVVEQMAATVDQQGIEVPGMEEFTKHTSPIP 550

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           +                 +   R+ YVGM+RA ++L++
Sbjct: 551 TLT---------------DNERRVFYVGMSRARERLVL 573


>gi|86141445|ref|ZP_01059991.1| hypothetical protein MED217_05487 [Leeuwenhoekiella blandensis
           MED217]
 gi|295133620|ref|YP_003584296.1| uvrD/REP helicase [Zunongwangia profunda SM-A87]
 gi|85832004|gb|EAQ50459.1| hypothetical protein MED217_05487 [Leeuwenhoekiella blandensis
           MED217]
 gi|294981635|gb|ADF52100.1| uvrD/REP helicase [Zunongwangia profunda SM-A87]
          Length = 521

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 18/140 (12%)

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
             KN  + ++     T  L +K   +  I+  +   I  + +DE QDT    + +I SL 
Sbjct: 133 LHKNGYITYD----QTLSLAEKAITNKRIKEMLSNRIQFLYVDEFQDTGNKMFSIIESLR 188

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           ++             ++ VGD +Q I SF  +  K       +   R      + +    
Sbjct: 189 KE---------KKTIIYCVGDPEQYIQSF-DSSIKNFQNIPILKASRMNQYETELNK--- 235

Query: 261 PLSFRSTADILTVVDKVFSI 280
             + RS   I+T ++     
Sbjct: 236 -TNRRSVKTIVTFLNNFSKR 254


>gi|167582405|ref|ZP_02375279.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis
           TXDOH]
          Length = 332

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 45/180 (25%), Gaps = 40/180 (22%)

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLE 833
           L+  +    G  +H+LL++                  +            L   +TRL+ 
Sbjct: 92  LAFPRGAAAGECLHRLLELSDFSDASTWPPAAQRALHERPVEAEPALAGRLPAMMTRLVA 151

Query: 834 NP---------MMTTAMSCDSYSEVSVSGKINCPKKDII--------------------- 863
           +           +         +E+           + +                     
Sbjct: 152 DLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAG 211

Query: 864 -ISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
            I G ID I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 212 FIKGFIDMIVEHDGRFWIVDWKSNHLGTTPDAYGERALDAAMAHHAYHLQALLYTVALHR 271


>gi|117530296|ref|YP_851139.1| hypothetical protein MaLMM01_gp125 [Microcystis phage Ma-LMM01]
 gi|117165908|dbj|BAF36216.1| hypothetical protein [Microcystis phage Ma-LMM01]
          Length = 380

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 26/169 (15%)

Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEVSVSGKI 855
           + +       +      L    E    L  I  L++   +  A     +    + V   I
Sbjct: 157 QAEEPLLALRHAANEYMLMLNPELDTELDVIGALIDAFNLCRAFIPPKEFKRTIYVELPI 216

Query: 856 NCPKKDIIIS-----------------GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
           +     +II+                 G ID + I+   + I +YKT             
Sbjct: 217 SEYNDGVIINEVPMPPDCGGDAGINLLGFIDWVGITSHGLTIVDYKTSKSAYTTD---KL 273

Query: 899 THIAQLSIYEKILKDSYPNKSLVCLLIY-VSEPKVF--IIPQNKLNKAF 944
            +  QL  Y    +     + +  + IY V    +    I ++ +++  
Sbjct: 274 AYNPQLCAYAYAYEKLTGTR-VDAMGIYNVRGGSLVLTPIDRSIMDRVL 321


>gi|319653684|ref|ZP_08007782.1| UvrD/REP helicase [Bacillus sp. 2_A_57_CT2]
 gi|317394657|gb|EFV75397.1| UvrD/REP helicase [Bacillus sp. 2_A_57_CT2]
          Length = 778

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 86/313 (27%), Gaps = 68/313 (21%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           +  + A     +  +     R   L  + + Q    +K    +   ++  +L    +  +
Sbjct: 368 SAQQMADRFYSSDTSLRFHNRLEKLMEWLIKQINEAEKAERNKPWVQEEIELLSNEEYHK 427

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH-----YEEAKKKNCVLDF---------- 149
                 + R                   L          +  +    +DF          
Sbjct: 428 AHAYLAKKRGFKEDSIHDYEIEPEALARLIVRKKLKPLRKRIRALRFVDFKGIYKQIFTD 487

Query: 150 ----------------EDLIINTNDLLKK-----RDVSAWIRYKIDQE-------INHIL 181
                            D+   T  +L +      D + ++  K   +       I HI+
Sbjct: 488 PIKIKQWIEGEIPAEWTDICQATLKMLDEGHLLYEDATPFLYLKEQIQGFQTNSSIKHIV 547

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  Q+E ++ L                +  +GD  Q+I++           E 
Sbjct: 548 VDEAQDYSPFQFEFLKRLF-----------PASKMTVLGDFNQAIFA--------HASEM 588

Query: 242 RINQKRATNAGQK-FSIIELPLSFRSTADILTVVDKVFSIPE-----NAQGLSEDSTTTI 295
              Q  A   G     +I +  S+RST  I+    ++    E     +  G   +     
Sbjct: 589 ADFQPLAGLYGPDETEVINIARSYRSTKPIIEFTRRLVPNGERIIPFDRSGKRPELKQIT 648

Query: 296 RHRSSRIGQVGTV 308
            H          V
Sbjct: 649 DHAQLHSCIASKV 661


>gi|167648807|ref|YP_001686470.1| double-strand break repair protein AddB [Caulobacter sp. K31]
 gi|167351237|gb|ABZ73972.1| double-strand break repair protein AddB [Caulobacter sp. K31]
          Length = 999

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/539 (9%), Positives = 116/539 (21%), Gaps = 54/539 (10%)

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                + +    +    L    A      +    +   D +  + + K PL         
Sbjct: 396 ARLMRWGVIPDSSAGAPLAASPAAILAQHVAALAVDPLDPVRLLAVAKHPLLRADAVAAR 455

Query: 455 KICTQRHETETVYEYIQKFAN--CGISKFQHVIKYIHELIHIA-----QFCSPHDFFTLI 507
            +  +        +  Q                + +      A         P      +
Sbjct: 456 DLELKSLRGPAPRDAGQLLGKLKDHPDALALAERVLAAARQAAAPYVDDQAPPSVATRAL 515

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLN-FTLRNEQNSYSSLQELISELE-QYPPTIKRAH 565
           + + +        +     + L   L+           +S       L+        R  
Sbjct: 516 VESLEALADPADLWAGSAGECLAGLLSSLITDGVVLPPASALGFADLLDRLVNEETLRVG 575

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
            A H  +RI     A+ + +  + L      ++         +   +     +P    + 
Sbjct: 576 GATHPRLRIFGAIEARMVRADRLILAGLEEGIWPKNAPIDPFLSRPMRAKLNLPPPERRI 635

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
               +  +               R                          + +  W   +
Sbjct: 636 GLTAHDFAQAACAPDVILVHSERR----------------------GGAPAVESRWLWRL 673

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                        +        +  A           P        + M   ++      
Sbjct: 674 KTLARGAGLRLTERPDVLAWVRDLDAAGLYDPIKRPAPTPPVADRPRKMAVTRVEALTRD 733

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
           P      +   L P          L+      +   RG  IH   +              
Sbjct: 734 PYAVWARDILKLYP----------LDRPNEPVEARARGTAIHAAFETFALQHPGPVPANA 783

Query: 806 TSYCTKNA----------KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
                                 A+E      +   + +      A +     E + S   
Sbjct: 784 AEIFAGLYLSELVAAGMPPAALARERALAREAALWVADLETRRRAGAERIVVEAAGSLTF 843

Query: 856 NCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           +   +   ++ + D+I  +      I +YKT        + +      QL++   IL++
Sbjct: 844 DIGGRPFTVTAKADRIEPTADGMAHILDYKTGAAP--SKKQVETGFSPQLTLTAAILRE 900


>gi|288817847|ref|YP_003432194.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|288787246|dbj|BAI68993.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6]
 gi|308751444|gb|ADO44927.1| UvrD/REP helicase [Hydrogenobacter thermophilus TK-6]
          Length = 526

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 80/255 (31%), Gaps = 44/255 (17%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y    + N + D+         LL +       +  +  + + +++DE QD   + 
Sbjct: 166 LFKDYINWLRDNDLYDYT-------RLLTE-----AFKGGLSIQGDLLILDEFQDLGNLH 213

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             +++   E+F          + +   GD+ Q+I++F GA P  ++  +           
Sbjct: 214 NLIVKRWFENF----------KYVLVCGDDDQAIFTFAGATPTHLINLRGD--------- 254

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT---------IRHRSSRIG 303
                  LP+S+R    +  + + V S  +     +               +    + + 
Sbjct: 255 ---REYVLPVSYRLPRGVHELAEGVISANKQRIPKTFKPRDETGRVDTLFSLEDALALLQ 311

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
                 L     +    Q     +S+   +  + +      LA  +  T+  +     + 
Sbjct: 312 NGEKKSLLLARNNYFVEQWKEILDSYNIPYKEIGKHVPIPALATHL-RTLKRIKEGKPVD 370

Query: 364 SNGKKRVIQAKDILV 378
                 +I      +
Sbjct: 371 DKDIITLIAYLKGAI 385


>gi|262039564|ref|ZP_06012863.1| UvrD/REP helicase [Leptotrichia goodfellowii F0264]
 gi|261746442|gb|EEY33982.1| UvrD/REP helicase [Leptotrichia goodfellowii F0264]
          Length = 662

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 69/508 (13%), Positives = 144/508 (28%), Gaps = 119/508 (23%)

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
           +R  I  +  +I IDE QDT     +++  L     +     ++P  +   GD  Q+IY 
Sbjct: 239 LRKLIIDQYPYIFIDEYQDTDEKIVKIMNLL----DIESKRINNPVFIGYFGDYVQNIYE 294

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
                 +    E +   K                + RS ++I+ V +K+ +   N + + 
Sbjct: 295 NGVGRIENDHLELKKINKIY--------------NRRSYSEIIEVANKIRNDEVNQKSIY 340

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
            DS              G V+ ++    + +                             
Sbjct: 341 TDSF------------GGNVEFYKGSKEKLEEF--------------------------- 361

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT------FLTRFLKNDYKI 402
                  +     I++  K + +       L+   +                  +    +
Sbjct: 362 -------LRKNKRIYNTTKNKPLH-----CLLLTNRMIASFAGFEKLYEFFSKSEYYSGV 409

Query: 403 SVVGNDRFILTDHL-AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           +    +   L++    + ++  L   I+  ++ +            F ++ I        
Sbjct: 410 NYNQLNTEFLSNEAEKMGEIPRLLYRIMRFKNKIENSST-------FLKEIIIIKELHER 462

Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI-----LGAKKGRQQ 516
               + E I  F+   +  F   I  I ++               I     + A+  R  
Sbjct: 463 NIVQLRELINLFSLQKVETFLEYIDLICKIYDETNNNDYKVIIGKIFDIKEISAQGIRSY 522

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
            +          L++     +  +     ++ E  +  +     IK         +   T
Sbjct: 523 LLESLYP----NLEDKTEKIIEIDDILKENINEYENWFDYIEDNIKSD-------IIYHT 571

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
            H  KGLE   V +V   +      + K+     +  D                     +
Sbjct: 572 YHGTKGLEFENVIVVMENNFGRDKDYFKRFFKYYNKRDK--------------------L 611

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLII 664
               +   E+   LLYV +TRA   L I
Sbjct: 612 DENDREKFEKARNLLYVSVTRAIKNLKI 639


>gi|332187513|ref|ZP_08389250.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
 gi|332012442|gb|EGI54510.1| uvrD/REP helicase family protein [Sphingomonas sp. S17]
          Length = 607

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 68/554 (12%), Positives = 149/554 (26%), Gaps = 95/554 (17%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                  IR  F           +   A  +      A  +   + F+        LL  
Sbjct: 115 EAIALSSIRSGFKAPSKLSDEEKAQKAALEVAERMRLA-TEEGKVCFDLFAERVAILL-- 171

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
              SA +R  +      I++DE QDTS  QW  + ++               TL A+ D 
Sbjct: 172 -HGSAKVRELVSTMYPFIILDEFQDTSAEQWRAVEAI-----------GKSSTLIALADP 219

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS-TADILTVVDKVFSIP 281
           +Q I+ F GA+P+R+   +        +            + RS   DI    + +    
Sbjct: 220 EQRIFDFIGADPERLNHFRAAFTPSEHDLAGD--------NHRSKGTDIAIFGNHL---- 267

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                                                D      +  W +         +
Sbjct: 268 -------------------------------LTGKFRDEPYQGVEADWFAS----NPNQA 292

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            + L  ++      ++       +          + +LV  ++ T L++   R    +  
Sbjct: 293 YASLVAQVLKARQRLLALGQRDWS----------LAILVPTKRMTRLVSDNLRAPFGN-V 341

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC---MLKSPLFNFSED-----DI 453
             +       +   +   +++A    +  +  +  F     +L S             D+
Sbjct: 342 PPIAHTAAVDMEGPILAAEVIAFL--LQQRSHNGCFDEFVDVLCSFFGGRGGATPTKGDL 399

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT---LILGA 510
            +    R   E     + K      +        +H+           D        +  
Sbjct: 400 EEAARFRSALEKWNGCLAKGKATPGNSVLQATFAVHQAASAVVLTGQPDADWTAVRAVLE 459

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISEL----EQYPPTIKRAHS 566
           + G ++ +          L E      ++    +       + L    + +         
Sbjct: 460 EGGCKRLVEVAQEARNVRLLERGTQLRQSLSQDWRDTGGYKNALAITRQSFVQEHFATAH 519

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
              + V +M +H AKG +   V +     + +  +   ++   P       + +      
Sbjct: 520 KPESGVVVMNMHKAKGKQFDEVII----FEGWPKRVKGEIVGNPDRIVGGNMNVGPMTQA 575

Query: 627 SRNNIVSDLIKHLK 640
            +N  VS     ++
Sbjct: 576 RQNFRVSVTRAKIR 589


>gi|284991128|ref|YP_003409682.1| hypothetical protein Gobs_2676 [Geodermatophilus obscurus DSM
           43160]
 gi|284064373|gb|ADB75311.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
           43160]
          Length = 320

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 69/245 (28%), Gaps = 40/245 (16%)

Query: 716 THHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS 775
           + H  +   +  +      +                +         +  + +T       
Sbjct: 5   SAHGLSPTGQPADAAAASPNSPVDTTATPRRPSLSPSRAADFKTCPLLYRFRTIDRLPER 64

Query: 776 DNQTFNRGLIIHKLLQVIFTLPE----------------HKRKNFITSYCTKNAKLWPAK 819
            +    RG ++H +L+ ++ LP                  + +                 
Sbjct: 65  KSLAAVRGTLVHSVLERLYDLPARRRTAEAARELVAPAWEELRANPEVAALFTEGGTGDD 124

Query: 820 EYKNLLLSITRLLEN--PMMTTAMS--------CDSYSEVSVSGKINCPKKDIIISGRID 869
                  S+   L +   ++ T  S             E+ V   +      +++ G +D
Sbjct: 125 AAAEQPPSLEAWLASAGELVETYFSLEDPSRIEPHGREEL-VEVTLP---DGLLLRGYVD 180

Query: 870 QISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC---LLI 925
           ++ ++      + +YKT     +  E      + Q+  Y  +L   +  + +V     L+
Sbjct: 181 RLDVAPNGALRVVDYKTGSMPREAFEGKA---LFQMKFYALVL---WRTRGVVASQLKLL 234

Query: 926 YVSEP 930
           Y+   
Sbjct: 235 YLGNG 239


>gi|218130935|ref|ZP_03459739.1| hypothetical protein BACEGG_02537 [Bacteroides eggerthii DSM 20697]
 gi|317476246|ref|ZP_07935497.1| hypothetical protein HMPREF1016_02480 [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987279|gb|EEC53610.1| hypothetical protein BACEGG_02537 [Bacteroides eggerthii DSM 20697]
 gi|316907657|gb|EFV29360.1| hypothetical protein HMPREF1016_02480 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 963

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 80/629 (12%), Positives = 175/629 (27%), Gaps = 104/629 (16%)

Query: 342 ASILARRIAYTISN-MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
            +  AR +   +   M          +  ++   + L+L       P +           
Sbjct: 297 ENAQARYLPEWVRTVMKNDAETSKEKENAIVLCNETLLLPVLHSIPPEVEN--------- 347

Query: 401 KISVVGNDRFILTDHLAIKDLMALG-------RFILSQEDDLSFVCMLKSPLFNFSEDDI 453
              V     F L        + AL        R    +    + + +LK P         
Sbjct: 348 ---VNITMGFPLAQTPVYSYISALMELQTTGYRRDTGRYTYEAVLAILKHPYTRQLSAAA 404

Query: 454 FKICTQRHETETVY--------EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
             +  Q  +    Y        +   +      +    + +Y+ EL+         +   
Sbjct: 405 DDLEHQLTKDNRFYPLPSELKKDAFLERVFTPQNGIASICRYLTELLREVAVVYRQEKDE 464

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTL-RNEQNSYSSLQELISELEQYPPTIKRA 564
             +  +  R+     +       ++  LN            +L+ L++ L          
Sbjct: 465 NDIFNQLYRESLFKSYTL-----VNRLLNLIESDGLTLQTDTLKRLMNRLLTSTNIPFH- 518

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                  +++M V   + L+   + ++                I  +L    G+     +
Sbjct: 519 -GEPAIGMQVMGVLETRNLDFRNLIMLSLNEGQLPKNGGDSSFIPYNLRKAFGMTTIEHK 577

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
           +              +   + E   LLY                NT+++  +       M
Sbjct: 578 NSV------YAYYFYRLIQRAENITLLY----------------NTASDGLNRGEMSRFM 615

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
           +     +   + +  L    +    +A E           E  + +    D ++ P  LF
Sbjct: 616 LQFLVESPHDISREYLEAGQSPQHSLAIEIHKT------NEVLQRMYNAYDIRQHPNALF 669

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK----LLQVIFTLPEHK 800
           SP   +      L        G    + + ++  +   G I H+    + Q + T  +  
Sbjct: 670 SPSALNTYLDCRLKFYYRYVAGLKAPDEVSAEIDSALFGTIFHRSAELVYQDLTTNGKEI 729

Query: 801 RKNFITSYCTKNAKLWP--AKEYKNLLLSITR----------LLENPMMTTAMSCDSYS- 847
           RK  +      + KL       +K  L  +            L+ + ++ + +     + 
Sbjct: 730 RKEDLEQLLRNDVKLQTYVDNAFKEELFHVQANEQPEYNGTQLIHSKVIASYLRQLLRND 789

Query: 848 -----------EVSVSGKINCP----KKDIIISGRIDQISISQQNIFIFEYKTHHHV--P 890
                      E  V+  +          + I G ID++      + I +YKT      P
Sbjct: 790 LHYAPFHMEAMEQKVTETVEIETPLGILPLNIGGTIDRMDSKDDTLRIVDYKTGGTPRTP 849

Query: 891 QEIEHI------PYTHIAQLSIYEKILKD 913
           + IE +         +I Q  +Y  I+  
Sbjct: 850 ENIEQLFVPADNRPNYIFQTFLYAAIMCR 878


>gi|238751084|ref|ZP_04612580.1| hypothetical protein yrohd0001_2170 [Yersinia rohdei ATCC 43380]
 gi|238710774|gb|EEQ02996.1| hypothetical protein yrohd0001_2170 [Yersinia rohdei ATCC 43380]
          Length = 381

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 72/241 (29%), Gaps = 40/241 (16%)

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDN----------QTFNRGLIIHKL----------- 789
           I     + PS +       L  LL                  G ++H+L           
Sbjct: 4   ITRTRPVLPSKLGVFVACPLRYLLESELHTLQCLPLHPRTILGSVVHRLVNKKGARGTST 63

Query: 790 -----LQV--IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT--RLLENPMMTT- 839
                L+   I  +    R   +T +  K   +      + LL  I     L  P +   
Sbjct: 64  AMIGQLENTFISAINSTHRVGPLTEWILKRHGVAGLISRQTLLEQIRYANSLTTPSVERE 123

Query: 840 -AMSCD-SYSE--VSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIE 894
                     E  + V  +         +SGR D I  I+   + I ++KT         
Sbjct: 124 KYFPDSPEKCENHIPVGREQPLTSVRFNMSGRADLIYQIAPDQLRIVDFKTGKVT-DAPN 182

Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLV---CLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
                ++ Q++ Y  ++K+  P   +      ++      +      ++ +   +++  +
Sbjct: 183 QPKDHYLLQVAAYGMMVKEWAPRVHIELELAGILDTWTGFLDANLHERIAQILIKLNNTL 242

Query: 952 P 952
           P
Sbjct: 243 P 243


>gi|313902119|ref|ZP_07835530.1| ATP-dependent nuclease subunit B [Thermaerobacter subterraneus DSM
           13965]
 gi|313467637|gb|EFR63140.1| ATP-dependent nuclease subunit B [Thermaerobacter subterraneus DSM
           13965]
          Length = 1217

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 102/1015 (10%), Positives = 245/1015 (24%), Gaps = 200/1015 (19%)

Query: 7   LSLNESYELIYKDLWPLPYFQVSDINKYVSLS----METGNPT---ILKKAQTLQQASQT 59
             + ++     +       F  + +  +  L+     ETG  T   + +  + L   +  
Sbjct: 45  FQMEQALLAAVRHRTGRAGFARARVASFQRLAWWVQQETGGATRPAVSELGKRLILRALL 104

Query: 60  QCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD-EFIKIRDRFNTYK 118
                R  L       +     + + T           E L++ ++    + R+     K
Sbjct: 105 SREAHRLQLFHRV-ADRPGFIDRMVTTLAELAAFGIDAEALRRQREAWLAEGREGLLAVK 163

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           +             L   Y+   +   + D    +   + + ++    AW+R        
Sbjct: 164 LHD--------LALLLEAYQGYLEDEGLADP---VHALDSVARRLGDCAWLRGAR----- 207

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
            I +D     +  +  V+ +L           +    +    D  ++ ++  G  P    
Sbjct: 208 -IWVDGFTGFTPGELRVLGALL--------AVADRVEVTLCLDPAEAAWAVRGQPPGGPG 258

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
                +     +A   F       ++++   +L +  +     E A  L  +     R  
Sbjct: 259 AGATPHGSHDPDAATLFHP-----TWQTARQLLELARRQRVTVEPAVTLPPEGAGQ-RLP 312

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
             R   +  ++              P   +  +  D   + ++A+    R+A        
Sbjct: 313 RFRNPALAHLERELFRFPGRRFTGAPDGITVVAAPDRRSEVAAAAREMLRLARE------ 366

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
                        + +D++V+VR   D      L      ++ I +  + R  +  H  +
Sbjct: 367 ----------EGYRFRDMVVIVR---DLDAYHDLISAACAEHGIPLFIDRRRPVGHHPLV 413

Query: 419 K----------------DLMALGRFILSQEDDLSFVCMLKS---------------PLFN 447
           +                 +    +  L      +   +                  P   
Sbjct: 414 ELVRAAVEVVAADWPYEAVFRYLKTDLVPVARGAVDRLENYVLAFGIRGSLWYRGQPWRW 473

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTL 506
                + +        +   E I +      +  ++    +           +  +    
Sbjct: 474 RRRFALDEEEADDPAWQAELEAINRIREEATAALRNFHHRVAAARRQPVPVKTLAEAVHQ 533

Query: 507 ILGAKKG--------RQQFISRFGNEVIDVLD------EFLNFTLRNEQNSYSSLQELIS 552
           +L              +   +       + L       + L     +  +   +L + + 
Sbjct: 534 LLLDLDVPGQILRWSEEAERAGDLEAAQEHLQVWNGIGDLLEQAATSLPDLPLTLADFLR 593

Query: 553 ELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
            LE     ++        ++V   +V  ++   + V FL+      F  +          
Sbjct: 594 VLEAGMEGLRVGLIPPGLDQVVAGSVERSRHPSARVAFLLGATDDAFPRRIDDDAIFTDG 653

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
             ++           +    +  L +              YV +TRA D+L +       
Sbjct: 654 EREE---LAQAGLELNPPGRIRALHEQYHA----------YVALTRARDRLWVSYPLGDE 700

Query: 672 NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE------------------ 713
             +          +   F        +            A +                  
Sbjct: 701 EGRAITPAWLTRRLRVLFPALAVTPAVVEGPEGVATASQAVDQLVRMLGRQAGSPAAGEP 760

Query: 714 ----------WSTHHPENTPLEREETIKQLMDEQKIP-----KKLFSPIKNDINEPYILN 758
                     W+   PE  P   +     +   Q  P      +               +
Sbjct: 761 AAAGWRILYQWAVTEPEARPRALQALQSLVHSNQVEPLGQDLARQLYARPRGPEWEVRTS 820

Query: 759 PSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEH---KRKNF 804
            S ++                  E  +S       G I H  L ++            + 
Sbjct: 821 VSRLERLAACPFQHFAAHGLGLKEREISRLDAPQLGRIYHAALSLLARRVWERGLDWADL 880

Query: 805 ITSYCTKNAKLWPAKEYKNLLLS--------------ITRLL--ENPMMTTAMSCDSYSE 848
                 +            L                   R L      +        +  
Sbjct: 881 DEEALEQLVGEAVEALRPRLAEELATSTAYQKHLLATARRTLVKTASRLAHHARQGRFRP 940

Query: 849 VSVSGKIN-------------CPKKDIIISGRIDQISIS---QQNIF--IFEYKT 885
           V+V                   P + + + GRID+I  +       F  + +YK+
Sbjct: 941 VAVEVDFGPESPVLPAAPWRVGPGEHLALRGRIDRIDAASSPSGRWFLRVIDYKS 995


>gi|260836599|ref|XP_002613293.1| hypothetical protein BRAFLDRAFT_118709 [Branchiostoma floridae]
 gi|229298678|gb|EEN69302.1| hypothetical protein BRAFLDRAFT_118709 [Branchiostoma floridae]
          Length = 2984

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 28/173 (16%)

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             +   Y+  K++  + D  D + N    L + +   W        I+ + IDE QD +  
Sbjct: 1289 DIFQTYQHEKRQRHMFDEMDFVHNLYKRLAEAEDVDW-------SIHQVYIDETQDFTQA 1341

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            +  ++     D          P  +F  GD  QSI    G   +     + +  K   + 
Sbjct: 1342 ELALLIRCCRD----------PNEMFFTGDTAQSIM--RGVSFRFK-DLRSLFHKARESL 1388

Query: 252  GQKFSI--------IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
             Q              L  ++RS   IL +   V  + E     S D     R
Sbjct: 1389 QQMGKRTAVQVPDMYHLTHNYRSHCGILDLAAGVIKLLERFFPYSFDHLPKDR 1441


>gi|219883001|ref|YP_002478165.1| hypothetical protein Achl_4397 [Arthrobacter chlorophenolicus A6]
 gi|219862007|gb|ACL42348.1| hypothetical protein Achl_4397 [Arthrobacter chlorophenolicus A6]
          Length = 615

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 61/225 (27%), Gaps = 36/225 (16%)

Query: 753 EPYILNPSTIDTKGKTNLES---------LLSDNQTFNRGLIIHKLLQVIFT---LPEHK 800
               L+PST  +                           G   H +++ ++       H+
Sbjct: 31  RRKALSPSTSKSMQSCAARWVGERLLRSEDEDPFAPAPLGTSAHSVMEDMYDEDVYERHE 90

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE------------ 848
           R   +    T         + ++   S+  ++               E            
Sbjct: 91  RSLALAEALTVRDADIMWPDIESEPDSVRAMVRLNRRRWIEEVKIAYEGIFVIEDPKTIE 150

Query: 849 -VSVSGKIN-CPKKDIIISGRIDQIS-----ISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
             S   +I+      +  +G ID++        ++ +   +YKT              H 
Sbjct: 151 VHSREMQIDGLTINGVPTNGFIDRVRYGVNKRGKEGLIPEDYKTGKVGNT---RFGDDHG 207

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEP--KVFIIPQNKLNKAF 944
            QL IY   LK+      +   ++Y      +   +    ++K  
Sbjct: 208 DQLRIYAAALKEKTGETPVAATVLYTKFGKARDVDLSPAAMSKTL 252


>gi|56479201|ref|YP_160790.1| DNA helicase [Aromatoleum aromaticum EbN1]
 gi|56315244|emb|CAI09889.1| predicted DNA helicase [Aromatoleum aromaticum EbN1]
          Length = 579

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 59/403 (14%), Positives = 121/403 (30%), Gaps = 50/403 (12%)

Query: 27  QVSDINKYVSLSMETGNP------TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
           Q   +   +   + TG P        L KAQ L            F   S   + +    
Sbjct: 8   QRQSVLDAIGPVLVTGGPGSGKTTIALAKAQRLIAVGLPPGQTVLFLSFSRAAVARVVEA 67

Query: 81  QKNIITQEINKK-----SPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL----AK 131
            K  + +    K           ++ K+    +    R         T            
Sbjct: 68  SKAQLPKASQSKLSIQTFHSFFWEILKAYGYLLGAPRRLRLLLPHDETAMRHQFESEGGN 127

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
           +     E   +K  ++ F+      + LL     SA +R         I++DE QDT+  
Sbjct: 128 WATER-ERLFRKEGLVAFDLFSTKAHALLA---ASARLRSLFSCRHPMIVVDEAQDTADD 183

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           QW+ +R L+E+             L  + D  Q IY F        +            A
Sbjct: 184 QWQCVRLLSEN-----------TQLVCLADLDQQIYDFRPGVSSERI-------THIMEA 225

Query: 252 GQKFSIIELPLSFRST-ADILTVVDKVF------SIPENAQGLSEDSTTTIRHRSSRIGQ 304
            Q   +     + RS  ++I+T  + +       +  +    ++  +    R  + R   
Sbjct: 226 LQPLRVDLQGQNHRSPNSEIVTFANDMLLGTPRGAAYQGVSRMNFRANADRRDAAIRSAV 285

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              +Q  +   + +D +      +W    + + +  +     + I + +  MI   ++  
Sbjct: 286 GIAIQKAKAAATPNDVENLALLATWGRGVNIISRALNGDGTNKSIPHRV--MIDEASVLL 343

Query: 365 NGKKRVI----QAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
           + +        +  +   L        L   + R    +  +S
Sbjct: 344 SSRMVAFLLEPRPAESAELTDLADALDLAAAVFRARGGNGNLS 386


>gi|192824246|ref|YP_001994887.1| gp70 [Mycobacterium phage Pukovnik]
 gi|190610476|gb|ACE79996.1| gp70 [Mycobacterium phage Pukovnik]
          Length = 266

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 60/211 (28%), Gaps = 54/211 (25%)

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITS----YCTKNAKLWPA-------------------- 818
           G   H + +V        R+  +      +  + AK                        
Sbjct: 41  GTAFHTVAEVYEKALAEGREMSLERAQEIFREEYAKDIGELCAETPNFEWWTWSGPYNGE 100

Query: 819 ---KEYKNL-LLSITRLLENPMMTT---AMSCDSYSEVSVSGKINCPKKDIIISGRIDQI 871
              +    + L  + +             ++ D     ++    N     I + G ID +
Sbjct: 101 RDIERRFEIGLEQVEKFYNWRNTKGQTIWITPDGKP--AIELSFNIELDGIKVRGYIDAV 158

Query: 872 SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
            +      + +YKT +    +          QL +Y   ++  Y  K +     +++  K
Sbjct: 159 VVVDGKPRVRDYKTGNSPGDD---------FQLGVYALAIEILYGVK-VDTGDYFMAGKK 208

Query: 932 -----------VFIIPQNKLNKAFAEISTKI 951
                      +    + K+ + F E+  KI
Sbjct: 209 GKPAKPTDPYDLTEWTREKVTERFHEVEAKI 239


>gi|310780566|ref|YP_003968898.1| Peptidase S24/S26A/S26B, conserved region [Ilyobacter polytropus
           DSM 2926]
 gi|309749889|gb|ADO84550.1| Peptidase S24/S26A/S26B, conserved region [Ilyobacter polytropus
           DSM 2926]
          Length = 810

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 33/205 (16%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
           ++ D     +   + ++              L   Y +       +DF D+     + + 
Sbjct: 171 QNADRLGATKYDEHNHR-LPKNSKIRKAIYSLMELYSKELLNRNRVDFNDVRRIALETMD 229

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           +  V          +  HI+IDE QD S +Q E+++ +               ++  + D
Sbjct: 230 EYTV---------NKFTHIIIDESQDLSKLQLELLKKVY--------NKKEYSSITFLFD 272

Query: 222 EKQSIY--SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
             QSIY  S+ G         KR                 L  +FR+T  I      +  
Sbjct: 273 CAQSIYSQSWLG--------NKRNFTTI--GFNMAGRSKTLSKNFRTTTQISQAAYSL-- 320

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQ 304
             E +  + +D      +   R G 
Sbjct: 321 -LEKSHDIIDDENYVKPYLIDRQGD 344


>gi|295702781|ref|YP_003595856.1| ATP-dependent nuclease subunit B [Bacillus megaterium DSM 319]
 gi|294800440|gb|ADF37506.1| ATP-dependent nuclease, subunit B [Bacillus megaterium DSM 319]
          Length = 1166

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 79/754 (10%), Positives = 201/754 (26%), Gaps = 167/754 (22%)

Query: 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
           G+          +           L      +   +   + E+       L    S    
Sbjct: 267 GIDIQEPILFNEQKRHQNSPELAYLERYYDERPTPEFQSEPENI-----QLLPAVSRRAE 321

Query: 346 ARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              IA  + +++           R  + +DI ++VR          L + +  DY+I   
Sbjct: 322 VEGIAREVLSLVRD---------RGYRYRDIALIVRN---AEDYHDLLQTIFQDYEIPYF 369

Query: 406 GNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETET 465
            + +  +  H  ++ + ++   +       +   ++K+ L      D+ ++  +  E E 
Sbjct: 370 IDQKRAMFHHPLVEFVRSVLEVVSGSWRYETIFRVVKTDLLFPLSSDVHRLREEMDELEN 429

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHI---------AQFCSPHDFFTLILGAKKGRQQ 516
                    +   SK     +    L  +         A     ++   +I+      QQ
Sbjct: 430 YVLAYGIQGSKWTSKEPFTYRKYRSLEDMNLGKTDEELAFEQKINELKNMIVPPIYSLQQ 489

Query: 517 FISR--FGNEVIDVLDEFL----------------------NFTLRNEQNSYSSLQELIS 552
            + +   G E  + L  FL                           +EQ   + L     
Sbjct: 490 KLKQGKIGKEKAEELYRFLTNLDIPQKIEALRNRCEEEGKLQEAREHEQVWKAILHLFDQ 549

Query: 553 ELEQYPPT------------------IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
            +E                                ++V + +   ++  +    F++   
Sbjct: 550 FVEMMGEEKVSISLFADLFETGLDSMQFALVPPALDQVVVASFERSRLSDIKASFVLGVN 609

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V   K      +               + + +      L+    +    +   L+Y+ 
Sbjct: 610 DGVIPAKPKSDGLLSE-------------KEREQLLESGLLLAPTGRQKLFDEQFLIYLA 656

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
           ++ +S++L +         K        + V + F   +    +     + +++ + Y  
Sbjct: 657 LSSSSEKLYVSYPLANEEGKTLLPSLVINRVKELFPLLQEKLLMTEPTDLEEEKQVDYIT 716

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN----------------EPYIL- 757
           +          + +  K+          +++    + +                E   L 
Sbjct: 717 NPLTSIAHLASQLQGWKRHYPMSSAWWDVYNFYVENPDWNSYSRKVLSSLFYKNEAKRLT 776

Query: 758 --------------NPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQV 792
                         + S ++                  E  +      + G + H  L++
Sbjct: 777 KKTSQRLYGKHIQASVSRMEKFEACPYAHFASHGLKLKERKVFKLAAPDIGELFHAALKM 836

Query: 793 IFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT------RLLENPMMTTAMSC 843
           I       + + KN     C + +     +    L   I         L +  +   +  
Sbjct: 837 ISDELRGGQKEWKNLTRKDCQQLSTAAVNELAPRLQNEILLSSNRHHYLTH-KLQQIIER 895

Query: 844 DSYS---------------EVSV-------SGKINCPKKDII-ISGRIDQISISQQN--- 877
            S                 E+         S +   P    + + GRID++  ++ +   
Sbjct: 896 ASLVLSEHAKMSGFVPVGLELGFGPSAELPSMQFTLPNGHTMELVGRIDRVDKAESSKGL 955

Query: 878 -IFIFEYKTHHHVPQEIEHIPYTHI---AQLSIY 907
            + I +YK+      +  ++   +     Q+  Y
Sbjct: 956 LLRIVDYKS----SDKALNLVEVYYGLSLQILAY 985


>gi|328471737|gb|EGF42614.1| hypothetical protein VP10329_01240 [Vibrio parahaemolyticus 10329]
          Length = 583

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 69/545 (12%), Positives = 124/545 (22%), Gaps = 125/545 (22%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y   K+    L  +D++     +L         +  +  +   I IDE QDT        
Sbjct: 139 YASIKEHEISLHHDDVVALMARML----AFPKFQKLLKSKFPIIFIDEYQDTD------- 187

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
            +L E        + S   +   GD  Q IY                     ++   K  
Sbjct: 188 SALAESIVQNLIDNDSGVVVGLFGDHWQKIYGSSA-------------CGLISSPAGKII 234

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
            I    +FRS  +I+  ++++                             +V   +   S
Sbjct: 235 EIGKRANFRSDKNIVECLNRM-----------------RPELPQAESDPSSVGGIKVYHS 277

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                       W                 R I  T S M+      S  K +       
Sbjct: 278 NDWQGARQTGAHWKDDLPEEETR-------RFIQQTKSLMVEHGWDMSLSKTK------- 323

Query: 377 LVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS 436
            +L              + L                       D        L + D   
Sbjct: 324 -ILFLTNNLIAT-EQKFKNL----------------------ADCFNYAEDYLKKNDKYI 359

Query: 437 FVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI-KYIHELIHIA 495
              +    L   +          R   E +    +  +       +    + + +L+ + 
Sbjct: 360 EFFVDTVELTALAFQQ-------RKYGELLQIKKKNRSYLTSQADKTAWIENLEKLMRLR 412

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ--ELISE 553
              +  D   L++     R              L          +      L     I  
Sbjct: 413 DTSTIGDVLDLLITTSMPRVPAKVADSEVRYQTL-----SARDKDSLEPDELSFVAKIRR 467

Query: 554 LEQYP-PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLV---DTGSQVFSHKHIKKMHIM 609
           L       +       +++    T H  KG +   V +V         +        + +
Sbjct: 468 LRAVSYSEVINLAEYINDKTPFSTKHGVKGAQFDNVLVVCGRGWNHYNWDQMLEWIENGV 527

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
           P   D                            T E    L YV  +RA   L +     
Sbjct: 528 PKGKDG---------------------------TFERNRNLFYVSCSRAKHNLTLLFTQY 560

Query: 670 TSNEK 674
            S++ 
Sbjct: 561 LSDKS 565


>gi|148359813|ref|YP_001251020.1| RecB family transporter exonuclease [Legionella pneumophila str.
           Corby]
 gi|148281586|gb|ABQ55674.1| RecB family exonuclease, hypothetical [Legionella pneumophila str.
           Corby]
          Length = 848

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/562 (10%), Positives = 150/562 (26%), Gaps = 83/562 (14%)

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
           ++ ++  + R            +    L+    I   +       +  ++     +L+SP
Sbjct: 253 ESSVLQRILRDCFEPNL--FNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSP 310

Query: 445 LFNFSEDDIFKICTQRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFC 498
               ++D+  +      E++ + +         +       K   ++K ++         
Sbjct: 311 YLGKAKDEFLQRSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNMNFYPEKTTLD 370

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ----ELISEL 554
              + F   L        ++    +E     + F        Q S  S      E    L
Sbjct: 371 EWIELFQERLNGIGFPGDYV--LNSEDYQCFNRFTMIFDEFRQLSLISSHLTKTEAFETL 428

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +Q           +++ ++I+ +  A G E   ++++    +    +      I   L  
Sbjct: 429 KQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLTDRCLPQQTRLSPFIPFELQR 488

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           + G+P  IP        +    + L++               R S + +        +  
Sbjct: 489 ELGMPHSIPAR-----ELQYAKQILQRLQ-------------RGSMETVFSYPQFDDDTP 530

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                             +    ++      ++ +             P++ +E+I    
Sbjct: 531 NLPCSLIIHYPAYLSRPADNKTNVQSCLVPLEENY-----------EVPVKPDESISGGT 579

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
                  K                           +           +G +IHK+L++++
Sbjct: 580 SLLSNQAKCPFKALAQHRL------------KANPVLKTTDGMDDKEKGQLIHKILELLW 627

Query: 795 TLPEHKR------KNFITSYCTKNAKLWPAKEYKN----------------LLLSITRLL 832
              E++          +  +  +  +       +                 L   I   L
Sbjct: 628 QRLENQEHLIKLKPAELERFIDQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYL 687

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
           E              E   +  IN    D  +  R+D++       ++ +YK+     + 
Sbjct: 688 EWEKQRPPFKITGLEE---NHSINLAGLDFKV--RVDRLDEVGNKQWVIDYKSTLPGGKP 742

Query: 893 IEHIPYTHIAQLSIYEKILKDS 914
                     QL +Y  + +  
Sbjct: 743 WNEERP-MEPQLLLYALLNEQI 763


>gi|23308869|ref|NP_600969.2| helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21324534|dbj|BAB99158.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum
           ATCC 13032]
          Length = 785

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 21/181 (11%)

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            +++IDEVQD S         + E  F  +       +L+ VGD  Q++Y F  A PK +
Sbjct: 191 KYLIIDEVQDNS---------VFEFVFALRFAAKHNTSLYLVGDSSQTLYEFRSANPKAL 241

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRH 297
              +             F    L  ++RS  +IL   +   S  E  Q            
Sbjct: 242 NSLEA---------SGVFGTYRLTTNYRSNQEILDFANIHLSDIEANQFAGIQLYANSFD 292

Query: 298 RSSRIGQVGTVQLWEQVVSQHDSQCNPQQ---ESWTSYFDSLPQESSASILARRIAYTIS 354
             +       V+L    VS+     +      ES  + FD+    +  +I+       I 
Sbjct: 293 APTADSFKEKVELDMHHVSKQSEFTDSIPYFMESNKARFDAAILNNEQTIVLAHSGREIR 352

Query: 355 N 355
            
Sbjct: 353 A 353


>gi|126652434|ref|ZP_01724606.1| ATP-dependent nuclease, subunit B [Bacillus sp. B14905]
 gi|126590705|gb|EAZ84820.1| ATP-dependent nuclease, subunit B [Bacillus sp. B14905]
          Length = 1169

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 90/759 (11%), Positives = 188/759 (24%), Gaps = 185/759 (24%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            + S+       IA  I+ +   D           + +DI++L R      L   L   + 
Sbjct: 311  EASNRRAEVHAIAREITKLTRED---------GYRYQDIVLLYR---QAELYDPLITSIF 358

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
              Y+I +  N +  +  H  I+   +    + S          +K+ LF   + ++    
Sbjct: 359  QQYEIPIFTNTKKTMLHHPLIELSRSALEIMTSNWKYEPVFRSVKTDLFFPLQAELTIWR 418

Query: 458  TQRHETETVYEYIQKFANCGISKFQHVIKYIHELI---------HIAQFCSPHDFFTLIL 508
             +    E        +      + +   K    L            A           I 
Sbjct: 419  ERADRLENYCLAQGIYGERWFEEARWFYKKYRGLEFHSRVQTDEERAMQAEIEAIRDEIR 478

Query: 509  GAKKGRQQFI--SRFGNEVIDVLDEFLN----------------------FTLRNEQNSY 544
               K  Q  +  +  G +V   L E +                           +EQ   
Sbjct: 479  QPLKEFQDKLSIAPTGKDVATALFELVESLQVYEKLQAMKDRELERGDALAASEHEQAWN 538

Query: 545  SSLQELISELEQYPPTIKRAHSANH------------------NEVRIMTVHTAKGLESP 586
              +  L   +  +         A                    +EV + TV  A+     
Sbjct: 539  EWINVLDQFVYMFGEQEMSVEEAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIK 598

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V F++     V+  +   +  +  +  +      +     S N ++              
Sbjct: 599  VGFVLGMNDGVYPTRMEYEGLLSDTEREWFSQIGYELAPTSSNRLLQ------------- 645

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW----------YDMVYDSFHNDERVK 696
             N L Y   T  SD+L +   +     K      +            ++         + 
Sbjct: 646  ENFLFYRAATTPSDKLYLTYPTADEEGKALLSSLYIKKFIGNDQTAGLLSGIQAERVVMD 705

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             I+L +            +  H      + E + +   +   + K         +    +
Sbjct: 706  PIELLDGNALPYLRHPRTALAHLMVQLRQAEHSRELAPEWLALQKFYQQDPYWALIFDRV 765

Query: 757  LNP---------------------------STIDTKGKTNL-----------ESLLSDNQ 778
              P                           S I+   +              E      +
Sbjct: 766  HYPITHKNEAQPLETYITQELYGKKLTSSVSRIEKYFRCPFSHFTTYGLRLEERAEYRLE 825

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-------- 830
            TF  G + H+ L         K     T     +      ++ K L              
Sbjct: 826  TFAMGDLFHEAL---------KWITEETHRLQLSWIRLTKQQIKQLARQAVEQIVPVFSH 876

Query: 831  --LLENPMMTTAMSCDSY------------------SEVSVSGKIN-------------- 856
              LL +                                +++                   
Sbjct: 877  QILLSSARYRYIQRKLIRIVERTMMALTQHANVSHFKPIAIEASFGPGQHEQLPPLEIDL 936

Query: 857  CPKKDIIISGRIDQIS---ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
               K + + GRID+I    I  ++   I +YK+      ++  + Y    Q+  Y  +  
Sbjct: 937  TSGKKMFMRGRIDRIDSATIDDRSYLRIVDYKSSAR-DLDLNEVYYGLSLQVLTYLDVAM 995

Query: 913  D----SYPNKSLVCLLIYVS-EPKVFIIPQNKLNKAFAE 946
            +      P ++    ++YV     +  + ++  +    E
Sbjct: 996  ENSSYWLPGETEPAGVLYVHVHNPMLKLDKDMTDSEIEE 1034


>gi|168704705|ref|ZP_02736982.1| ATP-dependent helicase [Gemmata obscuriglobus UQM 2246]
          Length = 156

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 54/159 (33%), Gaps = 14/159 (8%)

Query: 441 LKSPLFNFSEDDIFKIC-TQRHETETVYEYIQKFANCGISK------FQHVIKYIHELIH 493
           + +P     +  + K+      +   +     + A     K       +   + + +L  
Sbjct: 1   MNAPARGIGKVSLDKLQSFAASQEIGLLAAAGQIAKITEIKGKAATGLRDFHRLMTDLRS 60

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQE 549
                 PH+   L+L               E    +  + E +    +  ++++  ++ +
Sbjct: 61  K-MDQPPHELVRLVLDKSGYEAMLRDSTDEEDADRLANVSELVTAAKQFWDEDNSRTITD 119

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            + ++     T         + V +MT+H +KGLE P V
Sbjct: 120 FLEQITLASDTDGWD--EQADHVSVMTLHASKGLEFPAV 156


>gi|209543464|ref|YP_002275693.1| double-strand break repair protein AddB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531141|gb|ACI51078.1| double-strand break repair protein AddB [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1014

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 70/253 (27%), Gaps = 26/253 (10%)

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +V    A+ ++++              R    +       D+ +      + +++ +   
Sbjct: 656 FVACACAAPRVVLSVPGRRDGAPTVPARWLVRLDALLAGRDQALAAHPALSWLSRLDRP- 714

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
            +         P        + +   +I   +  P          L            L+
Sbjct: 715 VDAPRPVAPPRPRPPLAARPRALTITEIETWMRDPYAIHARHILGLR----------RLK 764

Query: 772 SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-------------NAKLWPA 818
            +       + G I+H  L   F  P  +R     +                     W A
Sbjct: 765 EIEEPADAADYGTIVHAALDRWFRQPAERRSAAGEAGLRATFAEELAAARLRPALAAWWA 824

Query: 819 KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN-CPKKDIIISGRIDQISI-SQQ 876
                +   + +         A +  + +E S + +++  P    ++ GR D+I      
Sbjct: 825 PRLARIAAWVVQAEAARASGQAGAVVTRTERSGTVELSGLPGGPFVLRGRADRIDRNGDG 884

Query: 877 NIFIFEYKTHHHV 889
            + + +YKT    
Sbjct: 885 GLTLIDYKTGTLP 897


>gi|313105903|ref|ZP_07792166.1| putative helicase [Pseudomonas aeruginosa 39016]
 gi|90569583|gb|ABD94654.1| conserved hypothetical protein [Pseudomonas aeruginosa]
 gi|310878668|gb|EFQ37262.1| putative helicase [Pseudomonas aeruginosa 39016]
          Length = 493

 Score = 65.3 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 30/180 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q  + +L+DE QD + +  ++              H     +  VGD  Q +Y F GA
Sbjct: 187 LSQRFDCMLLDEGQDINPVIADI-------------AHWQRIRMAIVGDPHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E               ++         L  S+R    I  V + + S     + L     
Sbjct: 234 E-----------DALNSDWMAGAEEHYLTQSWRFGPAIAHVANIILSYKGETRKLQGLGP 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN------PQQESWTSYFDSLPQESSASILA 346
            T+  +S          +   V+   ++           +  W    DS        + A
Sbjct: 283 QTLVKKSLPPDLPHRTFIHRTVIGVIENALQLVRNHPEPKFHWVGGIDSYSLRDLEDLYA 342


>gi|328885776|emb|CCA59015.1| putative DNA helicase [Streptomyces venezuelae ATCC 10712]
          Length = 731

 Score = 64.9 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 93/319 (29%), Gaps = 49/319 (15%)

Query: 1   LKNRFGLS-------LNES--YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQ 51
           L     L+        +ES       +DL       +  +    +L  +     +   A 
Sbjct: 297 LHRALHLAQQLPADAPDESILLTTFTRDLAADLRSNLELLIPEPALRAKIRVVNVDALAN 356

Query: 52  TLQQASQTQCIE---ERFSLLSSFFLTQKFTPQKNIITQEINKKSPD--LKEKLKKSQDE 106
            + +  +   +     +  +L+ +  T +   + +     ++++     L + L+  +  
Sbjct: 357 QVVREERGAPLALLAAQKEILNRWSRTAQR-LEIDFTDVFLDQEWRHVILAQDLRSPETY 415

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               R                         + +  ++     F  +      +L+ R   
Sbjct: 416 LKASRSGRGAALSPLKRAQVWRAV----EAFTQELRRADEWTFLQVCAEAARILQDRGG- 470

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                  D+   H++IDE QD    QW ++R+L             P  LF  GD  Q I
Sbjct: 471 -------DRPFRHVVIDEAQDLHPAQWRMLRALVA---------PGPDDLFIAGDTHQRI 514

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y                   R            L +++R+T +ILT   ++ +       
Sbjct: 515 YG-------------NRVSLRGLGISVAGRSTRLRINYRTTKEILTWSTRLLADASVDDM 561

Query: 287 LSEDSTTTIRHRSSRIGQV 305
                +      + R  + 
Sbjct: 562 DGGQDSLAGYRSAYRGARP 580


>gi|307611113|emb|CBX00755.1| hypothetical protein LPW_24591 [Legionella pneumophila 130b]
          Length = 831

 Score = 64.9 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/615 (10%), Positives = 161/615 (26%), Gaps = 93/615 (15%)

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
              QE+     A+        ++     +   K +  + +  +V+    +++ ++  + R
Sbjct: 190 EENQETPEVFSAKDKKTEYQELM----TWLEKKIQQGKKQIGVVVPNLEQESSVLQRILR 245

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                       +    L+    I   +       +  ++     +L+SP    ++D+  
Sbjct: 246 DCFEPNL--FNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFL 303

Query: 455 KICTQRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +      E++ + +         +       K   ++K ++            + F   L
Sbjct: 304 QRSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNMNFYPEKTTLDEWIELFQERL 363

Query: 509 GAKK--GRQQFISRFGNEVID---VLDEF--LNFTLRNEQNSYSSLQELISELEQYPPTI 561
                 G     S           + DEF  L+          +        L+Q     
Sbjct: 364 NGIGFPGDDVLNSEDYQCFNRFTMIFDEFRQLSLISSYLTKKEA-----FEALKQLIDNT 418

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                 +++ ++I+ +  A G E   ++++    +    +      I   L  + G+P  
Sbjct: 419 IFQPQKSNSPIQILGLLEASGCEFDSLWVMGLSDRCLPQQTRLSPFIPFELQRELGMPHS 478

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           IP        +    + L++               R S + +        +         
Sbjct: 479 IPAR-----ELQYAKQILQRLQ-------------RGSVETVFSYPQFEDDTPNLPCSLI 520

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
                      +    ++      ++ +             P++ +E+I           
Sbjct: 521 THYPAYLSRPADNKTNVQSCLVPLEENY-----------EVPVKPDESISGGTSLLSNQA 569

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-------- 793
           K                           +           +G +IHK+L+++        
Sbjct: 570 KCPFKALAQHRL------------KANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQE 617

Query: 794 ------FTLPEHKRKNFITSYCT--------KNAKLWPAKEYKNLLLSITRLLENPMMTT 839
                     E      I                 L    EY  L   I   LE      
Sbjct: 618 QLIKLKPDELERFIGQAIQGALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRP 677

Query: 840 AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
                   E   +  IN    D  +  R+D++       ++ +YK+     +        
Sbjct: 678 PFKITGLEE---NHSINLAGLDFKV--RVDRLDEVGNKQWVIDYKSTLPGGKPWNEERP- 731

Query: 900 HIAQLSIYEKILKDS 914
              QL +Y  + +  
Sbjct: 732 MEPQLLLYALLNEQI 746


>gi|289751888|ref|ZP_06511266.1| superfamily protein I DNA and RNA helicase [Mycobacterium
           tuberculosis T92]
 gi|289692475|gb|EFD59904.1| superfamily protein I DNA and RNA helicase [Mycobacterium
           tuberculosis T92]
          Length = 349

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 39/135 (28%), Gaps = 18/135 (13%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAK---------YLNAHYEEAKKKNCVLDFEDLI 153
             +  +         +    +   L +            L     E      V+DF   +
Sbjct: 195 ELERLVHALPAGRYQRDRGPSQWLLRMLATQTQRAELVPLLDALGERMHAGKVMDFAMQM 254

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
            +   L         +   + +    +L+DE QDT   Q  V+ SL              
Sbjct: 255 ASAARLAATSP---QVGQDLRRRYRVVLLDEYQDTGHAQRVVLSSLFG------GGVDDG 305

Query: 214 RTLFAVGDEKQSIYS 228
             L AVGD  QSI  
Sbjct: 306 LALTAVGDPIQSITG 320


>gi|162146538|ref|YP_001600997.1| hypothetical protein GDI_0714 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785113|emb|CAP54657.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 1014

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 70/253 (27%), Gaps = 26/253 (10%)

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           +V    A+ ++++              R    +       D+ +      + +++ +   
Sbjct: 656 FVACACAAPRVVLSVPGRRDGAPTVPARWLVRLDAFLAGRDQALAAHPALSWLSRLDRP- 714

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLE 771
            +         P        + +   +I   +  P          L            L+
Sbjct: 715 VDAPRPVAPPRPRPPLAARPRALTITEIETWMRDPYAIHARHILGLR----------RLK 764

Query: 772 SLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTK-------------NAKLWPA 818
            +       + G I+H  L   F  P  +R     +                     W A
Sbjct: 765 EIEEPADAADYGTIVHAALDRWFRQPVERRSAAGEAGLRATFAEELAAARLRPALAAWWA 824

Query: 819 KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN-CPKKDIIISGRIDQISI-SQQ 876
                +   + +         A +  + +E S + +++  P    ++ GR D+I      
Sbjct: 825 PRLARIAAWVVQAEAARASGQAGAVVTRTERSGTVELSGLPGGPFVLRGRADRIDRNGDG 884

Query: 877 NIFIFEYKTHHHV 889
            + + +YKT    
Sbjct: 885 GLTLIDYKTGTLP 897


>gi|255523433|ref|ZP_05390402.1| ATP-dependent DNA helicase [Clostridium carboxidivorans P7]
 gi|296184715|ref|ZP_06853126.1| hypothetical protein CLCAR_0113 [Clostridium carboxidivorans P7]
 gi|255512891|gb|EET89162.1| ATP-dependent DNA helicase [Clostridium carboxidivorans P7]
 gi|296050497|gb|EFG89920.1| hypothetical protein CLCAR_0113 [Clostridium carboxidivorans P7]
          Length = 710

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 104/349 (29%), Gaps = 43/349 (12%)

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
            T  +  +      +   +  R   +    +++    + +++ +   +    +++  K  
Sbjct: 360 ATKEEIEEMFSVYFKDMPLFRRNKKIKRILISKIKDERNDLVRKVEKEYKESIEKLSKDE 419

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTL--------AKYLNAHYEEAKKKNCVLDFEDL--I 153
            +      +     K+       + +        A      Y E      ++ ++DL  I
Sbjct: 420 LEIQQNNLNFIRKSKIRDIIRHVIEIKNEMKWMNAPDTIEIYNEFNNGEQLI-YDDLAPI 478

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +     L+          K  +E+ HI+IDE QD S++Q+EV++ LT             
Sbjct: 479 LYLKIKLEG--------LKYKKEVKHIVIDEAQDYSMLQFEVLKHLTGC----------- 519

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           ++   VGD  Q I       P           K  ++         L  S+RST +I+  
Sbjct: 520 KSFTIVGDSNQRI------VPVEGDIAMLQLDKVFSD--LDIYNFNLNKSYRSTREIMNF 571

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
            +K     +    +                    V    + V +   +            
Sbjct: 572 ANKYLKSNKT---IPLVRNGEKVLEKQVNNIDNLVDKIVENVVKLKEKEYESIAVVCKDS 628

Query: 334 DSLPQ--ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           D++          +   I    S +     +            D ++L+
Sbjct: 629 DTVETLGRLIKEKIHISILNEESRIYSGGEVILPSYFAKGLEFDAVILI 677


>gi|116052655|ref|YP_792970.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|32481647|gb|AAP84161.1| putative DNA helicase [Pseudomonas aeruginosa PA14]
 gi|115587876|gb|ABJ13891.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 493

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 30/180 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q  + +L+DE QD + +  ++              H     +  VGD  Q +Y F GA
Sbjct: 187 LSQRFDCMLLDEGQDINPVIADI-------------AHWQRIRMAIVGDPHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E               ++         L  S+R    I  V + + S     + L     
Sbjct: 234 E-----------DALNSDWMAGAEEHYLTQSWRFGPAIAHVANIILSYKGETRKLQGLGP 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN------PQQESWTSYFDSLPQESSASILA 346
            T+  +S          +   V+   ++           +  W    DS        + A
Sbjct: 283 QTLVKKSLPPDLPHRTFIHRTVIGVIENALQLVRNHPEPKFHWVGGIDSYSLRDLEDLYA 342


>gi|22537036|ref|NP_687887.1| exonuclease RexB [Streptococcus agalactiae 2603V/R]
 gi|76787095|ref|YP_329618.1| exonuclease RexB [Streptococcus agalactiae A909]
 gi|77406402|ref|ZP_00783462.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|81454476|sp|Q8E062|ADDB_STRA5 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|123601918|sp|Q3K1I5|ADDB_STRA1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|22533893|gb|AAM99759.1|AE014231_17 exonuclease RexB [Streptococcus agalactiae 2603V/R]
 gi|76562152|gb|ABA44736.1| exonuclease RexB [Streptococcus agalactiae A909]
 gi|77174993|gb|EAO77802.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1077

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 69/661 (10%), Positives = 185/661 (27%), Gaps = 111/661 (16%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +       +A  I   +              + KDILVL+    D          + 
Sbjct: 300 ECINQKDEVEHVARAIRQKLYQG----------YRYKDILVLL---GDVDSYKLQLSKIF 346

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKI 456
             Y I         +  H  +  + +L R    +      + + K+ ++   S+DD+   
Sbjct: 347 EQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYF 406

Query: 457 CTQ------RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI--- 507
                    +   +   +++       + +   + + +   +         D    +   
Sbjct: 407 EAYISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDGIKTLNQF 466

Query: 508 --LGAKKGRQQFISRFGNEVIDVLDE--------FLNFTLRNEQNSYSSLQELISELEQY 557
                + G    +SR   ++ +   E        F +   + +         L   L   
Sbjct: 467 MFFLTQVGLSDNLSRLVGQMSENEQEKHQEVWKTFTDILEQFQTIFGQEKLNLDEFLSLL 526

Query: 558 PPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              + +A      A  + V + +    +   +  V+ +      F      K  I     
Sbjct: 527 NSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS---- 582

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                   I  +   +     + +   K        L          +L++      +  
Sbjct: 583 --DIERQLINDANDTDGHFDIMTQENLKKNHFAALSLFNAA----KQELVLTIPQLLNES 636

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           +        ++       + + ++     + N   + A          + +++E T ++ 
Sbjct: 637 EDQMSPYLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQ 696

Query: 734 MDEQKIPKKLFSPI--------------------------KNDINEPYILNPSTIDTKGK 767
                  + L   +                          +   ++P  L+ S + T   
Sbjct: 697 TFWSVAVRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYN 756

Query: 768 TNLESLLSDNQTFN-----------RGLIIHKLLQVI--------------FTLPEHKRK 802
              +  L                   G  +H++ +++                + +  ++
Sbjct: 757 NQYKYFLQYVLGLEEQDSIHPDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQE 816

Query: 803 NFITSYCTKNAK-LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
           +   S  +++A+  +  +  +++  +   +L      T  S +   E+ +   I      
Sbjct: 817 DVFKSLYSEDAESRYSLEILEDIARATATILRQDSQMTVESEEERFELMIDNTIK----- 871

Query: 862 IIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
             I+G ID+I   S  ++ + +YK+      +I+        QL  Y   +     +K +
Sbjct: 872 --INGIIDRIDRLSDGSLGVVDYKSSAQKF-DIQKFYNGLSPQLVTYIDAISR---DKEV 925

Query: 921 V 921
            
Sbjct: 926 E 926


>gi|116620814|ref|YP_822970.1| putative DNA helicase [Candidatus Solibacter usitatus Ellin6076]
 gi|116223976|gb|ABJ82685.1| putative DNA helicase [Candidatus Solibacter usitatus Ellin6076]
          Length = 470

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 80/260 (30%), Gaps = 34/260 (13%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
           +  +P   ++ +E      ++                     +      A  ++A  +  
Sbjct: 121 KAASPANTLLAREFEFWRDEIAWIKGSLIGRETDYLAAERRGRGSALKAADRSVAWSVYM 180

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y+ A +++  +D+ED       LL + D      Y      +H+L+DE QD    Q  V
Sbjct: 181 RYQRALERSQKVDWED---YGRVLLDRIDQWPARLY-----CDHVLVDEAQDLHPNQLAV 232

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           +  +              R+L    DE Q IY    A     +  +    KR        
Sbjct: 233 LGRMA------------KRSLTIAADEGQKIYKTAFAWSDLGINVRGGGSKR-------- 272

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L  +FRST  I+ + + +     + +       + +       G    V      +
Sbjct: 273 ----LGQTFRSTRQIIGLANCL--RLRDRRENGSAEESELYDLPDIEGPRPAVWNVGTEL 326

Query: 316 SQHDSQCNPQQESWTSYFDS 335
            + +      +       D+
Sbjct: 327 KEEEVTIGIVKGLLHDQPDA 346


>gi|317121623|ref|YP_004101626.1| ATP-dependent nuclease subunit B [Thermaerobacter marianensis DSM
            12885]
 gi|315591603|gb|ADU50899.1| ATP-dependent nuclease subunit B [Thermaerobacter marianensis DSM
            12885]
          Length = 1306

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 64/665 (9%), Positives = 145/665 (21%), Gaps = 154/665 (23%)

Query: 362  IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
            +    ++   + +D++V+VR   D      L      ++ I +  + R  +  H  I+ +
Sbjct: 382  MLRLAREEGYRFRDMVVIVR---DLETYHDLLVSACAEHGIPLFVDRRRPVGHHPLIELV 438

Query: 422  MALGRFILSQEDDLSFVCMLKSPL-----------------FNFS--------------E 450
             A    +       +    LK+ L                 F                  
Sbjct: 439  RAALEVVAGDWPYEAVFRYLKTDLVPVPRGAVDRLENYVLAFGIRGSLWYGKGRWTWRRH 498

Query: 451  DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            D +      R E E   E +    +   +  +     +                   L  
Sbjct: 499  DSLEADEAPRPEQEAELEAVNGIRDEATAHLRRFFDRVKSSRRQPVPARDLARALYALLL 558

Query: 511  KKGRQQFISRFGNEVIDV---------------LDEFLNFTLRNEQNSYSSLQELISELE 555
                   + R+  E                   + E L     +    + +  E +  LE
Sbjct: 559  DLDIPAQLQRWSEEAERDGDLEAAQEHLQVWNGVSELLEQVEASLPEIHLTAGEFLRVLE 618

Query: 556  QYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 ++        ++V   +V  ++   +   F++      F  +  +         +
Sbjct: 619  AGMEGLRVGLIPPGLDQVVAGSVERSRHPSARAAFVLGATDDAFPRRIEEDAIFTDRERE 678

Query: 615  DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            +            R   + +                 YV +TRA D+L +         +
Sbjct: 679  ELAAAGLDLGPPGRVRALHEQYFA-------------YVALTRARDRLWVSYPLGDEEGR 725

Query: 675  KSNQRTWYDM---------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
                               V  +                     +A           P  
Sbjct: 726  AVAPAWLTRRMRVLLPGLEVSPADVPGPEGVATPAQAVDQLARLLACRRHRAADPAGPAA 785

Query: 726  REETIKQLMDEQKIPKKLFSPIKNDINEPYIL---------------------------- 757
                         + +   +           L                            
Sbjct: 786  AGAGRGTAEPWAVLYQWAVTDPDVQPRLRKALAAVAYGNHIPPLGRDLARQLYARMAGEA 845

Query: 758  -----NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVI-------- 793
                 + S ++                  E  +        G + H  L ++        
Sbjct: 846  WELRTSVSRLERFAACPFQHFAAFGLGLREREVGRLDAPRLGRVYHAALSLLSRKVWEAG 905

Query: 794  ---FTLPEHKRKNFITSYCTKNAKLWPAKEYKN--------------LLLSITRLLENPM 836
                 L E + +  +     + A     +   +              L  +  RL E+  
Sbjct: 906  IDWADLSEARLEAMVAECLQEIAPRLRGELAADSAYYEHLLRDAGRILTRTALRLAEHAR 965

Query: 837  ---MTTA-----MSCDSYSEVSVSGKINCPKKDIIISGRIDQIS---ISQQNIFI--FEY 883
                           ++ + +          + + + GRID+I           I   +Y
Sbjct: 966  RGTFRPLAVEADFGPEAGARLPFEPWELSTGERLALRGRIDRIDGARTEAGRWLIRVIDY 1025

Query: 884  KTHHH 888
            K+   
Sbjct: 1026 KSSRR 1030


>gi|239908037|ref|YP_002954778.1| hypothetical protein DMR_34010 [Desulfovibrio magneticus RS-1]
 gi|239797903|dbj|BAH76892.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 996

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/347 (10%), Positives = 94/347 (27%), Gaps = 33/347 (9%)

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                  +     ++++ V   + L    +FL+D               +  +L    G+
Sbjct: 545 DERAPFEAEPLTGLQVLGVLETRLLSFKRLFLLDAVEAKLPGAPRYDPLLPDTLRRLMGL 604

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
           P    +       +       +     E   + Y   +  S             +K    
Sbjct: 605 PDSRERD------LVAAYNLYRLFFGAEEITVFYRTGSPGS---------GLFEDKPGRS 649

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
           R    ++++      RV K                 ++        E  + +   ++ QK
Sbjct: 650 RFVEQLLWEEEKRLGRVLKPGEPPVSILRLPPCPIPASDPAVPVTGEVADRLAAYLETQK 709

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ-----VI 793
           +    F            L          + L  +  +      G ++H++L+      +
Sbjct: 710 LSASFFDAYLACP-----LRFFYRYLSPLSPLAEVAEEGDRAAVGEVVHEVLRDFFTPYL 764

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL---LSITRLLENPMMTTAMSCDSYS--- 847
               +    +          +L     +  L      +        +  A++    +   
Sbjct: 765 NRDIDAADLDAAALADLFETRLAGHAAFAALPPDGQLLLTRTGRAKLAEAVAATPRTTIL 824

Query: 848 --EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
             E  ++  +    +   ++GR D+I   +  + I +YKT      +
Sbjct: 825 ALETDLTASLETGGRTYPLTGRADRIDQREDGVVILDYKTGRPPKGQ 871


>gi|54298166|ref|YP_124535.1| hypothetical protein lpp2223 [Legionella pneumophila str. Paris]
 gi|53751951|emb|CAH13375.1| hypothetical protein lpp2223 [Legionella pneumophila str. Paris]
          Length = 858

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 62/562 (11%), Positives = 149/562 (26%), Gaps = 83/562 (14%)

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
           ++ ++  + R            +    L+    I   +       +  ++     +L+SP
Sbjct: 263 ESSVLQRVLRDCFEPNL--FNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSP 320

Query: 445 LFNFSEDDIFKICTQRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFC 498
               ++D+  +      E++ + +         +       K   ++K ++         
Sbjct: 321 YIGKAKDEFLQRSDYLQESKLLQDQSFPTKLFIEDVAYHTPKLAELLKNMNFYPEKTTLD 380

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ----ELISEL 554
              + F   L        ++    +E     + F        Q S  S      E    L
Sbjct: 381 EWIELFQERLNGIGFPGDYV--LNSEDYQCFNRFTMIFDEFRQLSLISSHLTKKEAFETL 438

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +Q           +++ ++I+ +  A G E   ++++    +    +      I   L  
Sbjct: 439 KQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLTDRCLPQQTRLSPFIPFELQR 498

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           + G+P  +P        +    + L++               R S + +        +  
Sbjct: 499 ELGMPHSMPAR-----ELQYAKQILQRLQ-------------RGSMETVFSYPQFDDDTP 540

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                           + +    ++      ++ +             P++ +E+I    
Sbjct: 541 NLPCSLITHYPAYLSRSADNKTNVQSCLVPLEENY-----------EVPVKSDESISGGT 589

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ--- 791
                  K                           +           +G +IHK+L+   
Sbjct: 590 SLLSNQAKCPFKALAQHRL------------KANPVLKTTDGMDDKEKGQLIHKILELLW 637

Query: 792 -------VIFTLPEHKRKNFITSYCT------------KNAKLWPAKEYKNLLLSITRLL 832
                   +  L   + + FI                     L    EY  L   I   L
Sbjct: 638 QRLENQEHLIKLKPAELERFIDEAIQGALNPIRQRHSQAFPDLIANVEYMRLKRIILSYL 697

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
           E              E   +  IN    D  +  R+D++       ++ +YK+     + 
Sbjct: 698 EWEKQRPPFKITGLEE---NHSINLAGLDFKV--RVDRLDEVGNKQWVIDYKSTLPGGKP 752

Query: 893 IEHIPYTHIAQLSIYEKILKDS 914
                     QL +Y  + +  
Sbjct: 753 WNEERP-MEPQLLLYALLNEQI 773


>gi|330881403|gb|EGH15552.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 418

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
           ++  +     D                 A++++A +EE K++   + F+D+++  +  L 
Sbjct: 315 EAMAQLKAALDSLPKPDAA----VLQHAAQWVSARFEEEKRRRAEMGFDDMLLRLDAAL- 369

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
                  +   I ++    LIDE QDT  +Q+ +  S+  
Sbjct: 370 HSAGGERLATLIREQFPVALIDEFQDTDPVQYRIFDSIYR 409


>gi|237720846|ref|ZP_04551327.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449681|gb|EEO55472.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 959

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 81/713 (11%), Positives = 188/713 (26%), Gaps = 100/713 (14%)

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
            V++KV S        +  +     +      Q+   +  E +    +   N   ES+ +
Sbjct: 216 NVLNKVESDFFRKLKDAGKALFYWDYDIFYTQQIKKHEAGEFLKRNLEEFPNELPESFFN 275

Query: 332 YFDSLPQESS-----ASILARRIAYTISNM---IGTDTIFSNGKKRVIQAKDILVLVRKR 383
            F    +         +  AR +   I  +       T+    +  V+   + L+L    
Sbjct: 276 TFKEPKKIRYISASTENAQARFLPGWIKAITNDHSQITVEKEKENAVVLCNEALLLPVLH 335

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                I    + +       +     +   + +         R    +    +   +LK 
Sbjct: 336 S----IPQEVKNVNITMGFPLAQTPVYSFINAVMELQTNGY-RSDTDRFTYEAVSAILKH 390

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
           P                     + +  + +      K    +  +    +  +    +  
Sbjct: 391 PY------TQQLSSHAGPLERELTQTNRFYPLPSELKQDDFLTTLFTPRNGIKELCDYLI 444

Query: 504 -----FTLILGAKKGRQQFISRFGNEV----IDVLDEFLNFTLRNE-QNSYSSLQELISE 553
                 + I   +       ++   E        ++   +     E      +L+ LI++
Sbjct: 445 ELIKNISTIYRKEGEYNDIFNQLYRESLFQSHTKINRLYSLIESGELNIRTDTLKRLITK 504

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +                 +++M V   + L+   + ++                I  +L 
Sbjct: 505 VLTSSNIPFH--GEPAIGMQVMGVLETRNLDFRNLIILSLNEGQLPKSGGDSSFIPYNLR 562

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              G+     ++              +   + E   LLY                NTS++
Sbjct: 563 KAFGMTTIEHKNAV------YAYYFYRLIQRAENITLLY----------------NTSSD 600

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
             +       M+         + +  L    +                   E    I + 
Sbjct: 601 GLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSTQEIRVEKTP------EVLRRIYRA 654

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV- 792
            D       + SP   +      L        G    + + ++  +   G I H   Q+ 
Sbjct: 655 YDSTHPNSLVLSPSALNAYLDCRLRFYYRYVAGLKTPDEVSAEIDSALFGTIFHLSAQLA 714

Query: 793 ---IFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSI----------TRLLEN--- 834
              +    +  +K  +      + KL     + +K  L  +           +L+ +   
Sbjct: 715 YTDLTATGKTIQKEDLERLLRNDVKLQSYVDQAFKKELFKVSPEEKPEYNGIQLINSKVI 774

Query: 835 -PMMTTAMSCDSY----------SEVSVSGKINCPKKDIIIS--GRIDQISISQQNIFIF 881
              +   +  D             +VS    I   +    +   G ID++   +  + I 
Sbjct: 775 VSYLKQLLRNDLQYTPFEMVAMEKKVSEEITIQTGQGPFTLRLGGTIDRMDAKESTLRIV 834

Query: 882 EYKTHHHV--PQEIEHI------PYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
           +YKT      P  IE +         +I Q  +Y  I+        +   L+Y
Sbjct: 835 DYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRQQSLM-VAPALLY 886


>gi|160914773|ref|ZP_02076987.1| hypothetical protein EUBDOL_00780 [Eubacterium dolichum DSM 3991]
 gi|158433313|gb|EDP11602.1| hypothetical protein EUBDOL_00780 [Eubacterium dolichum DSM 3991]
          Length = 889

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 77/281 (27%), Gaps = 21/281 (7%)

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
           + Y ++     + E              +  +  +  H        ++     +  +  +
Sbjct: 481 SKYLILSYPVGSYEGKSMEAALEIEQYAQTPSQPYPLHENYAELRLQDTLSADMAKQLFL 540

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI------ 793
                    +          S     G +  E           G + H +L+ +      
Sbjct: 541 KNGCLHGSISSFERYVKCPFSYFLRYGLSLKEPFQPGFPDAYAGTLFHYILESLTNAYGK 600

Query: 794 --FTLPEHKRKNFITSYCTKNAKLWPAKEYKNL---------LLSITRLLENPMMTTAMS 842
                   + +  +        +++P+ E   +         +     +L+     +  S
Sbjct: 601 EYSEQSSKQLRKIVDKELAHLTQIFPSMELALMNVKERLLISMTQTLEVLQEFETHSQFS 660

Query: 843 CDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHI 901
             + SE+     +   +   I + G ID++   Q    I +YK+          I     
Sbjct: 661 PTA-SELEFHYDLPLQENVTIALHGFIDRLDTYQDFACILDYKSS-IKTLSETDIFAALQ 718

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNK 942
            QL  Y  ++      K ++       + +    P  KL +
Sbjct: 719 LQLLTYAMVVHQQQ-QKEIMGAYYISLKNETIPCPAGKLTR 758


>gi|307298414|ref|ZP_07578217.1| ATP-dependent nuclease subunit B-like protein [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915579|gb|EFN45963.1| ATP-dependent nuclease subunit B-like protein [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 1025

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 96/905 (10%), Positives = 250/905 (27%), Gaps = 142/905 (15%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           +     SP   E L +       +++     ++F +   ++++ + +    +    +  +
Sbjct: 101 KGELADSPVFVEYLLEM---IHDVKENRGFDRIFSTEDEAVSVLESIYNELDSRFSRRNI 157

Query: 147 LD-FEDLIINTNDLLKKRDVSAWIRYKIDQEI-NHILIDEVQDTSLIQWEVIRSLTEDFF 204
            D F+         +++          I++E  + + +D   D S       +++   + 
Sbjct: 158 FDTFD-----AYTRIEEHKD-----ELINEEFGDTLFLDGFHDFSPALKIFFKTIIPTYR 207

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
               T +          +K+S++S   +  + +            +   +   I    S 
Sbjct: 208 EVFITITQEP-------DKESLFSNIDSILETIDEIAE------NSTDLEIKRIFFEKSP 254

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            S++ +    + +FS  +  Q     S        + +  V        + +      + 
Sbjct: 255 -SSSGLNGFKEALFSPGKVEQNCDSVSVVVYPDIFAEVEGVSRFVKESIISACEPGDISI 313

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
               +  Y   L  + +       + + I      +   S   +R+I   +  VL     
Sbjct: 314 VSSDFNLYSKLLSDKLNEYG----VPHRIEG--DEELHSSLSIRRLILPLETAVL----- 362

Query: 385 DTPLITFLTRFLKNDYK-------ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
                  +     + Y        I        I+ +      +        S  D+   
Sbjct: 363 -GFPPEKIIAMADSGYGGEVDSSFIESAAAMSRIIYERPN---MWLSLEKRRSSWDERLS 418

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA-- 495
             +        +   +     +    E + E I++  +  +   Q + + +     +   
Sbjct: 419 RLVDLMKERRNAIISLADDELEMSAAEELDEAIERIDSEVVPAVQRIFRLLDSFRSLRKR 478

Query: 496 -------QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF------LNFTLRNEQN 542
                   F +     +LI        +   R   E+  ++  F      L   L     
Sbjct: 479 DVGNYRKMFITWEKELSLIQSLTGYESEVKDR---EMDAIVRFFEYTLPYLERLLYFMGK 535

Query: 543 SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           S  S +E    L       K   S N  N V I ++  ++  +  +   V      + H 
Sbjct: 536 SSVSPKEYYRYLMLLLKHDKFPLSRNKANRVEIQSLINSRFSKKRMKVFVGFVDGAYPHV 595

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            +  ++      D                  S     L      E   L Y+ ++ A + 
Sbjct: 596 EMNPLYSFTQFGD------------------SRPRDLLLDEETHERLNL-YLSISTAEES 636

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYD--SFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
           +      +T + +      +   V +          +K+   +    +   +   S    
Sbjct: 637 VRFSLPESTIDGEPILPSPYLKNVAESSGCETTREGRKVGRRSGYIPELRASMSQSELKI 696

Query: 720 ENTPLEREETIKQLMDEQKIP------KKLFSPIKNDINEPYIL--------NPSTIDTK 765
                   E    L     +                 +     L        + S + + 
Sbjct: 697 SAAKFFLNEKWDLLKSFPPLSNLDTVLSNFRRDFSWSVQNRRRLEEVVGNVFSFSRLKSY 756

Query: 766 GKTNLESLLS-------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
                   LS             +    + G I H +L+  F+      ++ +     ++
Sbjct: 757 HDCPFSFFLSYVVGLDVSPEHVFELTPLDEGNIFHSVLKDFFSGKNRDWQDSLAENIKRH 816

Query: 813 AKLWPAKEYKNLLLSITRLLEN-----PMMTTAMSCDSYSEVSVSGKINCPK-------K 860
                   ++     ++ +L                D++   +        +       +
Sbjct: 817 LMHDSNIVFRFEFERLSEVLHEYITVREGKRPNFMGDNFIPYAFEKAFGIGETEPVKLLE 876

Query: 861 DIIISGRIDQISISQ--QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
           ++ + G+ID++ I +   ++++ +YK       +          QL +Y  + +    ++
Sbjct: 877 NLYLRGKIDRVDIDRSSSSVYLIDYK--RGDSGDE--------RQLLLYSLVAEKLLEDE 926

Query: 919 SLVCL 923
           SL   
Sbjct: 927 SLDVA 931


>gi|167823549|ref|ZP_02455020.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 9]
          Length = 252

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/190 (10%), Positives = 49/190 (25%), Gaps = 40/190 (21%)

Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
              +   + +L+  +    G  +H+LL++                  +          + 
Sbjct: 2   APRELAEDDILAFPRGAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAER 61

Query: 824 LLLSITRLLENP---------MMTTAMSCDSYSEVSVSGKINCPKKDII----------- 863
           L   +TRL+ +           +         +E+           + +           
Sbjct: 62  LPAMMTRLVADLAATELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPD 121

Query: 864 -----------ISGRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQ 903
                      + G ID I       +I ++K++H             +     + +  Q
Sbjct: 122 VALEAGTLAGFVKGFIDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQ 181

Query: 904 LSIYEKILKD 913
             +Y   L  
Sbjct: 182 ALLYMVALHR 191


>gi|255555527|ref|XP_002518800.1| conserved hypothetical protein [Ricinus communis]
 gi|223542181|gb|EEF43725.1| conserved hypothetical protein [Ricinus communis]
          Length = 2820

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 32/201 (15%)

Query: 87   QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
            +   +       +L +     +    +    K  + T+            YE+ K  N  
Sbjct: 1329 KGGLRAGESPDGRLSREDYAMLSSGRKSTLSKQQRKTIY------DCFEDYEKMKIANGD 1382

Query: 147  LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
             D  D++I+ +  LK    +  +       ++ + IDEVQD ++ Q  + + ++++   G
Sbjct: 1383 FDLADIVIDVHRRLKNEKYAGEM-------MDFVYIDEVQDLTMRQVALFKHISKNVNEG 1435

Query: 207  KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL---REKRIN-----QKRATNAGQKFSII 258
                         GD  Q+I    G + +                  +     GQ   I 
Sbjct: 1436 ---------FVFSGDTAQTI--ARGIDFRFEDIRSLFYNEFVLGSLSEGVDGKGQISKIF 1484

Query: 259  ELPLSFRSTADILTVVDKVFS 279
             L  +FR+   +L +   V  
Sbjct: 1485 HLSQNFRTHVGVLKLAQSVID 1505


>gi|172056767|ref|YP_001813227.1| ATP-dependent nuclease subunit B [Exiguobacterium sibiricum 255-15]
 gi|251764589|sp|B1YKM7|ADDB_EXIS2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|171989288|gb|ACB60210.1| ATP-dependent nuclease subunit B [Exiguobacterium sibiricum 255-15]
          Length = 1143

 Score = 64.9 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 73/697 (10%), Positives = 167/697 (23%), Gaps = 149/697 (21%)

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +E +   ++  +   +             +    + KDI  LVR               
Sbjct: 292 DEEVTGVTVSAAVNRQVETEAAVRKAIQLVRHDGYRFKDIAFLVR---HLEPYADHLERA 348

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD---- 452
              Y I    + R  +  H  ++ + A+   +++   + S   +LK+ L     +D    
Sbjct: 349 FQLYDIPYFLDQRESMVHHPIVELVHAVLEIVMTGYREESVFRLLKTELIPLPAEDPRLA 408

Query: 453 ---IFKICTQRHETETVYEYIQKFANCGISK----------------FQHVI-KYIHELI 492
              +     +R    ++++   +       +                ++  + + I  L 
Sbjct: 409 LDRLETFVLERGIKGSMWKKPWQLKRRLADEISLTDAELQEELELNEWRQFLVEAIEPLE 468

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD-EFLNFTLRNEQNSYSSLQELI 551
              +       +T  L           R        L+   L+    ++Q   + L    
Sbjct: 469 KRFKASKTMSEYTRALYRFLEEHHMTDRLTVWKQQALEVNELSQAREHDQVYEAVLLLF- 527

Query: 552 SELEQYPPTIKRAHS-------------------ANHNEVRIMTVHTAKGLESPVVFLVD 592
            +LE   P                           + ++V        +  +  VVFL+ 
Sbjct: 528 EQLEAAAPEATLTTELFVQMVETGLESLRFSLVPPSLDQVIATDYVRGRLQQVKVVFLLG 587

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               +                 +    +         +     +        ++    LY
Sbjct: 588 ANDGLIP-------------LVEDQSKLLSEGDHDFLHDQGIPVGKASLDVFDDELYYLY 634

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
            G+T  S+ L I       + K     +    +       +                   
Sbjct: 635 QGVTAPSESLHISYALVDEDGKALQPASIVKQIK--HQLLQDRPVKTYFAEAGDHAPDDQ 692

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI------NEPYILNPSTIDTKG 766
                 PE         +++L     I    F      +          + + +      
Sbjct: 693 LQFVTSPERAAAAAAIELRRLQRRYPIQPSWFDVYNRLLENGRGRERMALFSNALFYQNQ 752

Query: 767 KTNLESLLSDN---------------------------------------QTFNRGLIIH 787
              L   L+ N                                       +  + G + H
Sbjct: 753 AEPLPEDLARNLYGDTIKASVSRFETYNACSYKHFARYGLRLKERKLYKFEAPDIGNLFH 812

Query: 788 KLL---------------------------QVIFTLPEHKRKNFITS-----YCTKNAKL 815
             L                           + +  +    +   + S     Y  K    
Sbjct: 813 GALNDLSMNIKASGKRWRELDDQSCSNLAKEAVEKVTPEIQNAILMSSNRFGYIKKKLTD 872

Query: 816 WPAKEYKNLLLSITRLLENPMMTTA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS 874
              +  K L+    R    P +         +  +  +        +I  +GRID++  +
Sbjct: 873 VVEQTAKMLVKQAERSEFEPDLFEISFGNAMFPPLRFTLP---DGTEIEFTGRIDRVDQA 929

Query: 875 --QQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
                ++  I +YK+      +   I Y    Q+ +Y
Sbjct: 930 TIGDQLYVRIVDYKSSA-KELDFAEIYYGLAIQMLLY 965


>gi|296391325|ref|ZP_06880800.1| DNA helicase [Pseudomonas aeruginosa PAb1]
          Length = 315

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 48/151 (31%), Gaps = 24/151 (15%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q  + +L+DE QD + +  ++              H     +  VGD  Q +Y F GA
Sbjct: 186 LSQRFDCMLLDEGQDINPVIADI-------------AHWQRIRMAIVGDPHQQLYRFRGA 232

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E               ++         L  S+R    I  V + + S     + L     
Sbjct: 233 E-----------DALNSDWMVGAEEHYLTQSWRFGPAIAHVANIILSYKGETRKLQGLGP 281

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            T+  +S          +   V+   ++   
Sbjct: 282 QTLVKKSLPADLPHRTFIHRTVIGVIENALQ 312


>gi|254500632|ref|ZP_05112783.1| hypothetical protein SADFL11_668 [Labrenzia alexandrii DFL-11]
 gi|222436703|gb|EEE43382.1| hypothetical protein SADFL11_668 [Labrenzia alexandrii DFL-11]
          Length = 1046

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/418 (9%), Positives = 112/418 (26%), Gaps = 60/418 (14%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   R        V+I+    A+      V L       +  +      +   +  
Sbjct: 611 ALMSGDAVRRRLPRDPRVQILGPMEARLQAFDFVILGGLNEGTWPQRTRNDPWLNRPMKR 670

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           D G+     +  +  +  +  +                        ++++ + +      
Sbjct: 671 DMGLEPPERRLGAAAHDFAQGMGA---------------------KRVLLSRAARADGAP 709

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
               R    +   +        + +          +  +     P + P  +     +  
Sbjct: 710 TVASRWLQRLTTLAGPEIAAGMEARGNRYSQLAALLDRQAGDVRPADRPAPKPPLGARPK 769

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH-KLLQVI 793
                  +        I   + L            ++ +  +    ++G +IH  L + +
Sbjct: 770 TLSVTEIERLVRDPYAIFARHSL--------ELQPVDPIGGEPGAADKGNLIHDALAEFL 821

Query: 794 FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEV 849
            T      +  +T+      +L+   +    + ++      P            ++   +
Sbjct: 822 STWTGPFDETAVTALLEIGEELFEPLDAFPAIRALW----WPRFQRIAEGFVAFEAKRSL 877

Query: 850 SVSGKINCPKKDI---------IISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYT 899
            V  +       +          + GR D+I  +S  ++ + +YKT     Q  + +   
Sbjct: 878 HVEKRFLEIGGGVELKLPGLDFRLRGRADRIDLMSSGSLSVIDYKTGQVPSQ--KQVDAL 935

Query: 900 HIAQLSIYEKILKD-----SYPNKSLVCLLIYVS----EPKVFIIPQNKLNKAFAEIS 948
              QL +   +++            +   L+Y+        V  + +N  + A  E+ 
Sbjct: 936 LSPQLPLEAAMIQRGGFKDVPAGDPV-GELLYLQLKGGTDAVLEVGRNPKDAALEELI 992


>gi|325279706|ref|YP_004252248.1| hypothetical protein Odosp_0998 [Odoribacter splanchnicus DSM
           20712]
 gi|324311515|gb|ADY32068.1| hypothetical protein Odosp_0998 [Odoribacter splanchnicus DSM
           20712]
          Length = 938

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 95/351 (27%), Gaps = 63/351 (17%)

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                +++M +   + L+   + ++     +     +    I  +L     +P       
Sbjct: 504 EPLEGLQLMGLMETRMLDFNHLIILSANEGILPKTTLPASFIPYNLRFGFRLPTP----- 558

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ--LIICKHSNTSNEKKSNQRTWYDM 684
                         +     +    Y  + R+ D   L        +  + S       +
Sbjct: 559 --------------EHQDAVFAYYFYRLLQRSRDIHILYTSGVKGMNGGEMSRF-----L 599

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
               + +   V +    N I+             P    LER           +   +  
Sbjct: 600 YQIKYESGLTVAERNFQNPISTQNPKEIRIGKTPPILHILER---------YTRSEDQTI 650

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKN 803
           SP   +      L             E L  +      G I H+  + +  T+P  +   
Sbjct: 651 SPSALNTYMECSLKFYFKYIAQIKEKEELAEELDHRLLGNIFHECSESLYATIPGGEITK 710

Query: 804 FITSYCTKNAKLWPAKEYKNLLL----SITRLLEN-----------PMMTTAMSCDS--- 845
                   N  L      ++ L      I+RL+++             +    S D    
Sbjct: 711 AAIDTILANGSLIEEHIRRSYLKVYDPKISRLIDSGSNELILGVIKKYLREMFSYDKKIC 770

Query: 846 ---------YSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
                       V V   I   +K + + G ID+I  + Q I + +YKT  
Sbjct: 771 PFRLLAMENRFHVPVKIGIEGQEKTVFVGGFIDRIDRTDQGIRVIDYKTGA 821


>gi|317478933|ref|ZP_07938080.1| hypothetical protein HMPREF1007_01196 [Bacteroides sp. 4_1_36]
 gi|316904910|gb|EFV26717.1| hypothetical protein HMPREF1007_01196 [Bacteroides sp. 4_1_36]
          Length = 963

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 62/491 (12%), Positives = 136/491 (27%), Gaps = 83/491 (16%)

Query: 468 EYIQKFANCGISKFQHVIKYIHEL-IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
           +   +      +    +  Y+ EL   +A           I      R+     +     
Sbjct: 426 DAFLEQVFTPQNGIAALCSYLTELLREVAVLYRQEKDVEDIFNQL-YRESLFKSYTL--- 481

Query: 527 DVLDEFLNFTLRNEQNS--YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
             ++  L+     E +     +L+ L++ L                 +++M V   + L+
Sbjct: 482 --VNRLLSLIETGELSGVRTDTLKRLLNRLLTSANIPFH--GEPAIGMQVMGVLETRNLD 537

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              + ++                I  +L    G+     ++              +   +
Sbjct: 538 FRNLIMLSLNEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQR 591

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            E   LLY                NTS++  +       M+     +   +    L    
Sbjct: 592 AENVTLLY----------------NTSSDGLNRGEMSRFMLQFLVESPHNISLEYLEAGQ 635

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
           +  +    E           E  + +    +  + PK  FSP   +      L       
Sbjct: 636 SPQQAREIEIHKTP------EMLQQMFDAYNIHQRPKAFFSPSALNAYLDCRLKFYYRYV 689

Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKL----- 815
            G    + + ++  +   G I H+  ++    +       RK+ +      + +L     
Sbjct: 690 AGLKAPDEVSAEIDSTLFGTIFHRSAELVYNELTANGREIRKDDLEQLLKDDVRLQAYVD 749

Query: 816 -----------------------WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS 852
                                    +K   + L  + R   +             +V   
Sbjct: 750 NAFKEKFFHVPLTEQPEYNGTQLIHSKVIASYLRQLLR--NDLQYAPFRMEGMEQDVREM 807

Query: 853 GKINCPKKDIIIS--GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIA 902
            +I+ P+  + +   G ID++      + I +YKT      P+ IE +         +I 
Sbjct: 808 MEIDTPQGKLALQIGGTIDRLDSKGDTLRIVDYKTGGTPKTPENIEQLFTPADNRPNYIF 867

Query: 903 QLSIYEKILKD 913
           Q  +Y  IL  
Sbjct: 868 QTFLYAAILCR 878


>gi|148378712|ref|YP_001253253.1| helicase [Clostridium botulinum A str. ATCC 3502]
 gi|153933356|ref|YP_001383096.1| putative helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153935697|ref|YP_001386645.1| putative helicase [Clostridium botulinum A str. Hall]
 gi|148288196|emb|CAL82264.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
 gi|152929400|gb|ABS34900.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152931611|gb|ABS37110.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 752

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 62/169 (36%), Gaps = 37/169 (21%)

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDF-----EDLIINTNDLLK----KRDVSAWIRYKID-- 174
            + + K L  + E   KK+   ++     +++   T + L+      +    + Y     
Sbjct: 452 LVDVYKKLFENLEFFLKKSNT-EYHEKNIDEMKSYTLEALRIGKLNYEDQPPLLYLKGAL 510

Query: 175 ------QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
                  EI +++IDE QD + +Q+E+   L            +   +  +GD  QSI  
Sbjct: 511 GDLPKNSEIKYVIIDEAQDYTPLQYEIFSQLF-----------NHANMTILGDLHQSINP 559

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
           F             +  K  T       II L  S+RST +I     ++
Sbjct: 560 FM--NVGDYSNISNVFPKDNT------CIINLTKSYRSTMEITEFSRRI 600


>gi|307942841|ref|ZP_07658186.1| double-strand break repair protein AddB [Roseibium sp. TrichSKD4]
 gi|307773637|gb|EFO32853.1| double-strand break repair protein AddB [Roseibium sp. TrichSKD4]
          Length = 1058

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/464 (11%), Positives = 125/464 (26%), Gaps = 53/464 (11%)

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
              + ++E      +  +++  + +  +  +  +       D       A     +  + 
Sbjct: 522 PRWKKIHEADWTVLSDLVTQLGNALAPLEAIADLTAPMPILDLAEAHARAVAAIAEDETG 581

Query: 521 FGNE--VIDVLDEFLNFTLRNEQNSYSSLQELISEL-----EQYPPTIKRAHSANHNEVR 573
             +E    +  D F  F +       + L+   ++              R        V+
Sbjct: 582 SPDELYAEEAGDVFAAFMVELLSAKDTGLELKPADWPAVLTALMSGHAVRRRLPGDPRVQ 641

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           I+    A+  +   V L       +  K      +   +  D G+     +  +  +   
Sbjct: 642 ILGPLEARLQQFDRVILGSLNEGTWPQKTRNDPWLNRPMKRDLGLEPPERRIGASAHDF- 700

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM--VYDSFHN 691
                                M   +  +I+ + +          R    +  +      
Sbjct: 701 --------------------CMGFGAKTVILARAARADGAPTVASRWLQRLTTLAGPDIT 740

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDI 751
            +   +  + + + +    A    T  P   P        + +   +I + +  P     
Sbjct: 741 KDMSGRGAVYSDLAEAIDRADGLVTPAPRPNPAPPVAIRPKQLSVTEIERLIRDPYAIFA 800

Query: 752 NEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCT 810
                L P          ++ +  +    ++G IIH  L   +        +  +    +
Sbjct: 801 RHVLDLQP----------VDPIGGEPNAADKGNIIHDALAKFLSDWDGPFNETAVAHLVS 850

Query: 811 KNAKLWPAKEY---------KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
              KL+   +             L      +             Y EV     +  P  D
Sbjct: 851 IGEKLFAPLDAFPSVRALWWPRFLRIADGFVAFEARRAPKVEHRYLEVGGGVDLKLPSLD 910

Query: 862 IIISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
            ++ GR D+I  +   +I I +YKT       ++ +      QL
Sbjct: 911 FLLKGRADRIDVMENGSIAILDYKTGQVP--SLKQVEALLAPQL 952


>gi|163784552|ref|ZP_02179407.1| hypothetical protein HG1285_10542 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880180|gb|EDP73829.1| hypothetical protein HG1285_10542 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 327

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 56/160 (35%), Gaps = 25/160 (15%)

Query: 778 QTFNRGLIIHKLLQVI----FTLPE-----------HKRKNFITSYCTKNAKLWPAKEYK 822
               +G +IH LL+ +                     K           + + +   +  
Sbjct: 108 SPAEKGTLIHNLLEKLYKKYPFENLEEEIEELKKGFEKEIKEKLKMILPSFRPFEENKAL 167

Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIF 881
            LL    + +    +      +  +E+     +    K+   SG+ID+     Q N +I+
Sbjct: 168 KLLERTIKFIY-FDIERLEKENKKTEI-----LERSYKNRYFSGKIDRADKDCQNNFYIY 221

Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLV 921
           +YKT        + I   +  QL IY++ L++    K++ 
Sbjct: 222 DYKTGKSPENLEKEIKNKY-IQLVIYKEFLEN--EGKNIR 258


>gi|82548269|gb|ABB82960.1| hypothetical protein [uncultured organism HF70_19B12]
          Length = 402

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 67/231 (29%), Gaps = 49/231 (21%)

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQ-------TFNRGLIIHKLLQVIFTLPEHKRK 802
           +    + L+PS+     +   +  LS  +           G  +H  ++ I  L    R 
Sbjct: 20  ESFRAHRLSPSSWSRYEQCPRKYWLSRQRLPRKASMPAALGNAVHNSVEDICNLDIADRD 79

Query: 803 N--------FITSYCTKN-------------AKLWPAKEYKNLLLSITRLLENPMMTTAM 841
           +           +   ++                W  +        +   L      + +
Sbjct: 80  DDEIGWMPPTAKAILDRHWKIEKDGFMATPRHPRWKDELITQAHDGLVGALNILCSKSLL 139

Query: 842 SCDSYSEVSVS-----GKINCPKKDIIIS------GRIDQIS--ISQQN----IFIFEYK 884
                SE+++S       I    +  ++S      GR+D +   + +        + + K
Sbjct: 140 PQTKLSELTISDWKYVQSIVLANEGTLVSECGRLMGRLDLLVADLDENGQSKGWIVADLK 199

Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK-SLVCLLIYVSEPKVFI 934
           T       ++        QL  Y  +LK + P+   +     Y +   +  
Sbjct: 200 TGRPPIGGLDPKVSR---QLRFYRDLLKRNNPDHPPIRAEGWYSANQTIHE 247


>gi|251780603|ref|ZP_04823523.1| ATP-dependent nuclease subunit B [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084918|gb|EES50808.1| ATP-dependent nuclease subunit B [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 1152

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 114/955 (11%), Positives = 266/955 (27%), Gaps = 231/955 (24%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
           D    + D+ +  ++ +       + +         K  +  +D +D            +
Sbjct: 137 DALRDLTDKIDDNELIEKIRELSLIYEEF-----NVKMHSSYIDTDD------------E 179

Query: 165 VSAWIRYKIDQEI---NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           ++   +  +   I   + I IDE    +  Q E+IR L+                     
Sbjct: 180 LTLLAKKLLANNIYANSEIWIDEFTTFTPQQLEIIRILS--------------------- 218

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
            K S+           L   +I      +    FS IE   +      +L    K+    
Sbjct: 219 -KTSV-------VNITLCMDKIENSDVEDITNVFSSIENTENR-----LL----KLMEEN 261

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                   +  + + +R     ++  ++ +         +   +        ++  +   
Sbjct: 262 NIGYLNPINLNSKLPYRFKNSEELSHIEKYCITYPFKSYKGKNKDVRLYKANNTYDEI-- 319

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                 ++A  I  ++           R  + +DI V+ R          +   + NDY+
Sbjct: 320 -----EKVAKDIIRLVRD---------RNYRFRDISVVCRN---IENYNKIISVIFNDYE 362

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I    + +  L ++  I  + +    +L      S    LKS L  F+  DI ++     
Sbjct: 363 IPFFMDQKIKLLNNPLIVLITSAFEVLLKNWSYESVFKYLKSGLTGFNIYDIDRLENFVL 422

Query: 462 ETETVYEYIQKFANCGISKFQ-----------------HVIKYIHELIHIAQFCS----- 499
           E         +     +   +                  V   +     + +        
Sbjct: 423 EHGIKSYKWNEEEIEKLKNIKIENGATEDELTIFNLMEEVRNSLISFHKLIEGKHYVRDI 482

Query: 500 ---PHDFF----------TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
               ++F             I+  ++ + +   +   +V  ++ + L+  +    +    
Sbjct: 483 CKALYEFLLSIKAFERIDEWIIKFEELKLEDKVKEYKQVESIVIDMLDQAVEVMGSDVVD 542

Query: 547 LQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             E    L                ++V +  +   KG E   +++V     +    H  +
Sbjct: 543 TFEFFKILNSGFENEEIGVIPVALDQVNVGDIARIKGREVKALYIVGINDGILPAAHKDE 602

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             +      +                   ++    +S   E   ++Y  +T AS+ L++ 
Sbjct: 603 GILSDKDRIEL-------------KEFGIVLAADGRSKAFEEQFVVYTALTIASEYLMLS 649

Query: 666 KHSNTSNEKKSNQ-----------------RTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
                   K                      + YD+   S H ++ +  I   N +    
Sbjct: 650 YPMADFEGKSLRPSIIISRIKKILPNLVEESSLYDLSKRSDHFNKVISPIPTFNELIFAL 709

Query: 709 -------------WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                        W          E+   + E T K L       K   + + +      
Sbjct: 710 RRELEDEDIDEEYWGEVYNWFKENEDFKWKIENTFKGLRYSNTGEKVSRNKLLSLYKNDL 769

Query: 756 ---ILNPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLL----------- 790
                + S ++   +      +            +    + G  +H +L           
Sbjct: 770 GKLSFSVSRLEKYAECPFSYFIQYGLKAKNRKVYEFTPPDLGSFVHDILDSFTNKVKKEK 829

Query: 791 ----------------QVIFTLPEHKRKNFIT-----SYCTKNAKLWPAKEYKNLLLSIT 829
                           ++I T  +    + +       Y +K  K   +K    +   + 
Sbjct: 830 IAWSDLDMIKCKNIVSELIDTKLKEDSGSILNSTNKYKYFSKRFKRVISKSVSVISEQMR 889

Query: 830 R----LLENPMMTTAMSCDSYSE-VSVSGKINCPKKDIIISGRIDQ---ISISQQNIF-I 880
           R    +  N       S  SY++  ++  ++    + + ++GRID+   + +       I
Sbjct: 890 RGEFEVFNNE-----FSFGSYNDGEAIVLELP-SNEKVYLNGRIDRIDTLDLEGSTYLRI 943

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---------KDSYPNKSLVCLLIY 926
            +YKT  +   ++    Y    QL +Y   L         K + P      +L +
Sbjct: 944 VDYKTG-NKHFDLNQFYYGLQMQLLVYLDALIKNSEYILKKQALPG----AVLYF 993


>gi|188588814|ref|YP_001919479.1| ATP-dependent nuclease subunit B [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251764546|sp|B2UX56|ADDB_CLOBA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|188499095|gb|ACD52231.1| ATP-dependent nuclease subunit B [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 1152

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 112/955 (11%), Positives = 265/955 (27%), Gaps = 231/955 (24%)

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRD 164
           D    + D+ +  ++ +       + +         K  +  +D +D            +
Sbjct: 137 DALRDLTDKIDDNELVEKIRELSLIYEEF-----NVKMHSSYIDTDD------------E 179

Query: 165 VSAWIRYKIDQEI---NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           ++   +  +   I   + I IDE    +  Q E+IR L+                     
Sbjct: 180 LTLLAKKLLANNIYANSEIWIDEFTTFTPQQLEIIRILS--------------------- 218

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
                     +     L   +I      +    FS IE   +      +L    K+    
Sbjct: 219 --------KASVVNITLCMDKIENSDVEDITNVFSSIENTENR-----LL----KLMEEN 261

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                   +  + + +R     ++  ++ +         +   +        ++  +   
Sbjct: 262 NIGYLNPINLNSKLPYRFKNSEELSHIEKYCITYPFKSYKGKNKDVRLYKANNTYDEI-- 319

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                 ++A  I  ++           R  + +DI V+ R          +   + NDY+
Sbjct: 320 -----EKVAKDIIRLVRD---------RNYRFRDISVVCRN---IENYNKIISVIFNDYE 362

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I    + +  L ++  I  + +    +L      S    LKS L  F+  DI ++     
Sbjct: 363 IPFFMDQKIKLLNNPLIVLITSAFEVVLKNWSYESVFKYLKSGLTGFNIYDIDRLENFVL 422

Query: 462 ETETVYEYIQKFANCGISKFQ-----------------HVIKYIHELIHIAQFCS----- 499
           E         +     +   +                  V   +     + +        
Sbjct: 423 EHGIKSYKWNEEEIEKLKNIKIENGATEDELTIFNLMEEVRNSLISFHKLIEGKHYVRDI 482

Query: 500 ---PHDFF----------TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
               ++F             I+  ++ + +   +   +V  ++ + L+  +    +    
Sbjct: 483 CKALYEFLLSIKAFERIDEWIIKFEELKLEDKVKEYKQVESIVIDMLDQAVEVMGSDVVD 542

Query: 547 LQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
             E    L                ++V +  +   KG E   +++V     +    H  +
Sbjct: 543 TFEFFKILNSGFENEEIGVIPVALDQVNVGDIARIKGREVKALYIVGINDGILPAAHKDE 602

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             +               + +        ++    +S   E   ++Y  +T AS+ L++ 
Sbjct: 603 GILSD-------------RDRIELKEFGIVLAADGRSKAFEEQFVVYTALTIASEYLMLS 649

Query: 666 KHSNTSNEKKSNQ-----------------RTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
                   K                      + YD+   S H ++ +  I   N +    
Sbjct: 650 YPMADFEGKSLRPSIIISRIKKILPNLVEESSLYDLSKRSDHFNKVISPIPTFNELIFAL 709

Query: 709 -------------WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
                        W          E+   + E T K L       K   + + +      
Sbjct: 710 RRELEDEDIDEEYWGEVYNWFKENEDFKWKIENTFKGLRYSNTGEKVSRNKLLSLYKNDL 769

Query: 756 ---ILNPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLL----------- 790
                + S ++   +      +            +    + G  +H +L           
Sbjct: 770 GKLSFSVSRLEKYAECPFSYFIQYGLKAKNRKVYEFTPPDLGSFVHDILDSFTNKVKKEK 829

Query: 791 ----------------QVIFTLPEHKRKNFIT-----SYCTKNAKLWPAKEYKNLLLSIT 829
                           ++I T  +    + +       Y +K  K   +K    +   + 
Sbjct: 830 IAWSDLDMIKCKNIVSELIDTKLKEDSGSILNSTNKYKYFSKRFKRVISKSVSVISEQMR 889

Query: 830 R----LLENPMMTTAMSCDSYSE-VSVSGKINCPKKDIIISGRIDQ---ISISQQNIF-I 880
           R    +  N       S  SY++  ++  ++    + + ++GRID+   + +       I
Sbjct: 890 RGEFEVFNNE-----FSFGSYNDGEAIVLELP-SNEKVYLNGRIDRIDTLDLEGSTYLRI 943

Query: 881 FEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL---------KDSYPNKSLVCLLIY 926
            +YKT  +   ++    Y    QL +Y   L         K + P      +L +
Sbjct: 944 VDYKTG-NKHFDLNQFYYGLQMQLLVYLDALIKNSEYILKKQALPG----AVLYF 993


>gi|327540908|gb|EGF27468.1| UvrD/REP helicase [Rhodopirellula baltica WH47]
          Length = 274

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 9/224 (4%)

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
           +  +    +     L++ +      +  + S L++ +  + +      RA       VR+
Sbjct: 57  KALMPHCDSRENVRLEQLIELATLYQHTADSRLRDFVELVHEKRVQRPRAA-----VVRV 111

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHI--KKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           MTVH +KGLE   VFL +    +          +  +          +   Q        
Sbjct: 112 MTVHQSKGLEFDAVFLPEIYKALLGPSPQCLADIPEIGQPARGLSRSVGEAQWHFLPKRW 171

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
             +      +   E   LLYV MTRA   L +      + +K  N RT   ++Y ++  +
Sbjct: 172 QAVFGGSVAARLTEAMCLLYVAMTRARQGLYLVIP--PAGKKDFNNRTAASLLYHAWKCE 229

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDE 736
                       + D     + +    + T  E E+   + +  
Sbjct: 230 ADPTAEGEVLFESGDADWFGDSNIESSDETKSENEDVPTRRLSF 273


>gi|229056772|ref|ZP_04196174.1| UvrD/REP helicase [Bacillus cereus AH603]
 gi|228720566|gb|EEL72130.1| UvrD/REP helicase [Bacillus cereus AH603]
          Length = 778

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 30/157 (19%)

Query: 150 EDLIINTNDLLKK-----RDVSAWIR-------YKIDQEINHILIDEVQDTSLIQWEVIR 197
           +++   T ++L +      D + ++        ++ ++ I H+L+DE QD S  Q+E ++
Sbjct: 500 DEICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLK 559

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L                +  +GD  Q+I++ H +E         +     TN       
Sbjct: 560 RLF-----------PAAKMTVLGDFNQAIFA-HASETVNFNTLTSLYGPDETNG------ 601

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           I L  S+RST  I+     +    +N      D    
Sbjct: 602 INLTRSYRSTKPIIEFTRYLVPEGKNINAFERDGEKP 638


>gi|289616301|emb|CBI57097.1| unnamed protein product [Sordaria macrospora]
          Length = 713

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 56/143 (39%), Gaps = 9/143 (6%)

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            +L + ++  W         + I++DE QD + + + +I              S+   L 
Sbjct: 150 RVLDRNELPRWD----SAPFDIIVLDEFQDCTKLLFWLINCFILANDQKAGGQSAR--LV 203

Query: 218 AVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            +GDE+Q+IY F GA+ + +     +       +   F   +L  SFR +   +  ++  
Sbjct: 204 VLGDERQAIYGFRGADDRYLTTAPELLGI---VSSYPFIKAQLNRSFRLSDQSVQFINNT 260

Query: 278 FSIPENAQGLSEDSTTTIRHRSS 300
           F   E+    S+     I  R  
Sbjct: 261 FLSGESYITSSKPGPKPIILRCH 283


>gi|52842482|ref|YP_096281.1| endonuclease [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629593|gb|AAU28334.1| RecB family exonuclease, hypothetical [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 858

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 58/562 (10%), Positives = 150/562 (26%), Gaps = 83/562 (14%)

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
           ++ ++  + R            +    L+    I   +       +  ++     +L+SP
Sbjct: 263 ESSVLQRILRDCFEPNL--FNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSP 320

Query: 445 LFNFSEDDIFKICTQRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFC 498
               ++D+  +      E++ + +         +       K   ++K ++         
Sbjct: 321 YLGKAKDEFLQRSDYLQESKLLQDQSFPTKLFIEDIAHHTPKLAELLKNMNFYPEKTTLD 380

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ----ELISEL 554
              + F   L        ++    +E     + F        Q S  S      E    L
Sbjct: 381 EWIELFQERLNGIGFPGDYV--LNSEDYQCFNRFTMIFDEFRQLSLISSHLTKKEAFEAL 438

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +Q           +++ ++I+ +  A G E   ++++    +    +      I   L  
Sbjct: 439 KQLIDNTIFQPQKSNSPIQILGLLEASGCEFDSLWVMGLTDRCLPQQTRLSPFIPFELQR 498

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           + G+P  IP        +    + L++               R S + +        +  
Sbjct: 499 ELGMPHSIPAR-----ELQYAKQILQRLQ-------------RGSVETVFSYPQFDDDTP 540

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                             +    ++      ++ +             P++ +E+I    
Sbjct: 541 NLPCSLITHYPAYLSRPADNKTNVQSCLVPLEENY-----------EVPVKPDESISGGT 589

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
                  K                           +           +G +IHK+L++++
Sbjct: 590 SLLSNQAKCPFKALAQHRL------------KANPVLKTTDGMDDKEKGQLIHKILELLW 637

Query: 795 TLPEHKR------KNFITSYCTKNAKLWPAKEYKN----------------LLLSITRLL 832
              E++          +  +  +  +       +                 L   I   L
Sbjct: 638 QRLENQEHLIKLKPAELERFIDQAIQGALNPIRQQHSQTFPDLVANVEYMRLKRIILSYL 697

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
           E              E   +  IN    D  +  R+D++       ++ +YK+     + 
Sbjct: 698 EWEKQRPPFKITGLEE---NHSINLAGLDFKV--RVDRLDEVGNKQWVIDYKSTLPGGKP 752

Query: 893 IEHIPYTHIAQLSIYEKILKDS 914
                     QL +Y  + +  
Sbjct: 753 WNEERP-MEPQLLLYALLNEQI 773


>gi|76801117|ref|YP_326125.1| helicase [Natronomonas pharaonis DSM 2160]
 gi|76556982|emb|CAI48556.1| probable helicase [Natronomonas pharaonis DSM 2160]
          Length = 613

 Score = 64.9 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 34/160 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +   K ++ ++ F D++                   +   ++H++IDE QD + +Q+
Sbjct: 189 IRAWRTYKGEHDIVGFADMLERVQQ------------RSLLPNVDHLVIDEFQDITTLQY 236

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            V                    +   GD+ Q +Y++ GA+P  +L E   +     N   
Sbjct: 237 GVYEEWKPHMES----------VLIAGDDDQVVYAWQGADPNLLLDEDVDDDVVLPN--- 283

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                    S+R  + IL +V+   S  +  Q        
Sbjct: 284 ---------SYRLPSRILNIVNTQISHIDKRQDKDLKPRK 314



 Score = 39.5 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 17/98 (17%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFLV-DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
             + VR+ T+H+AKG E+  VF+  D   +V                 +       P   
Sbjct: 489 AADRVRVGTIHSAKGREADHVFVATDLTEKVVEQMAASVEEPEAVPGAEEFTKRSDPVPT 548

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
             +N                  R+ YVGM+RA ++L++
Sbjct: 549 MTDN----------------ERRVFYVGMSRARERLVL 570


>gi|323142755|ref|ZP_08077470.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
 gi|322417468|gb|EFY08087.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066]
          Length = 476

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 26/110 (23%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             ++L+DE QDT+ +   +                +      VGD  QSIY F GA    
Sbjct: 172 YEYVLLDEAQDTNPVTMALF-------------TDNNCRRILVGDSHQSIYGFRGAFNAL 218

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
                              + + L  SFRS   +L   +         + 
Sbjct: 219 ESAVAD-------------TTLHLSYSFRSVQSVLDRANYFLQRFSLYKE 255


>gi|164687579|ref|ZP_02211607.1| hypothetical protein CLOBAR_01220 [Clostridium bartlettii DSM 16795]
 gi|164603353|gb|EDQ96818.1| hypothetical protein CLOBAR_01220 [Clostridium bartlettii DSM 16795]
          Length = 1241

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 86/260 (33%), Gaps = 27/260 (10%)

Query: 128  TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
             +   +   Y +   +N   D  D+      L+K ++++            ++++DEVQD
Sbjct: 777  EILYSITQKYNQWLVENEYYDINDIAFELQSLIKDKNIN----------YEYVVVDEVQD 826

Query: 188  TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK-RINQK 246
             + +Q  ++  L ++        +  R +   GD  Q I              K    +K
Sbjct: 827  FTEVQIYMLFLLAKE--QEIYGKNKTRKILLAGDPNQII---------NPTFFKVGRLRK 875

Query: 247  RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                 G  +    L  +FR++ +I+ + +           L        ++  ++  + G
Sbjct: 876  LFYLHGYNYEDKRLNENFRNSINIMKMNN--IVNKIINDKLPARKEEDRQYEITKNNKTG 933

Query: 307  TVQLWEQVVSQHD---SQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
             V+  +          +Q N   +      D   +E          A+TIS   G +   
Sbjct: 934  IVEQVKASDENLKVIFTQINASAKVALIVSDDEKKEYLKEKYGCENAFTISEFKGKEFDN 993

Query: 364  SNGKKRVIQAKDILVLVRKR 383
                  +    DI   V K+
Sbjct: 994  IIVYNILSDYADIYEEVYKK 1013


>gi|239815307|ref|YP_002944217.1| exonuclease-like protein [Variovorax paradoxus S110]
 gi|239801884|gb|ACS18951.1| exonuclease-like protein [Variovorax paradoxus S110]
          Length = 864

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 59/563 (10%), Positives = 141/563 (25%), Gaps = 70/563 (12%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +T           ++      + L+   A   +M+  R           +  LKS   
Sbjct: 267 RALTRRIGAQLQAQGVTAHDETGWKLSTTRAAATVMSALRACAHDAGSDQVLEWLKSGAD 326

Query: 447 NFSEDDIFKICTQRHETETVYEYIQ----KFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             +          R E    +        +             + +           P  
Sbjct: 327 GDALATQALEARLRREGVREWSAWCGQAARSEKPQDIALLPFTEAVEGRRMAMARSRPLA 386

Query: 503 FFTLILGAK--KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-----SSLQELISELE 555
            +   L      G Q            V+         +  +        +L E  + + 
Sbjct: 387 DWLRALRELLEAGEQWEPLAADMAGAKVIGALWLDADAHGDDDEFPGGRHTLAEFTAWVR 446

Query: 556 --QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
                 +          +V ++ +H   G     V +     +          +   +  
Sbjct: 447 DVLEDASFVPPAGNEAPQVVVLPLHQLLGRAFGAVVIPGCDDRRLPASPEPPGNWSAAQR 506

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
            + G+P                                      A + L       ++  
Sbjct: 507 AELGLP--------------------------------------ARETLE--AAQRSAWA 526

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
                     +   S  + E V+   L  ++  D  +        P    L+        
Sbjct: 527 AALCNPCCEVLWRQSDASGEPVRPSPLVQALQLDHALQMAADPRTPREVALQPTAYPTPS 586

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
            +   +     S  ++    PY      +   G  + + L ++    + G  +H  L   
Sbjct: 587 GELLPLRNISTSVYEDLRRCPYRFF--ALRQLGLRSADELDAEVDKRDFGNWLHAALGHF 644

Query: 794 -------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTAMSCDS 845
                   T    +R  +I++   +  + +   + + L   +    + +  +      ++
Sbjct: 645 HEALKEKPTSDAAERVAYISAAAERATREFGLSDAEFLPFAAAWPAVRDGYLQWLAGHEA 704

Query: 846 YSEVSVSGK--INCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIA 902
              V    +  +  P   + + GR+D+I        F+ +YKT      +      T   
Sbjct: 705 SGAVFAESEPWMEQPLGSLQLVGRLDRIDRMPDGQAFVIDYKTESAAVTKERVKDPTEDT 764

Query: 903 QLSIYEKILKDSYPNKSLVCLLI 925
           QL+ Y  ++     + +L    +
Sbjct: 765 QLAFYAALVA----DDTLRAAYV 783


>gi|313898400|ref|ZP_07831937.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312956782|gb|EFR38413.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 581

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 95/356 (26%), Gaps = 37/356 (10%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +D++     LL      A  R     +   ILIDE QD+          + E F      
Sbjct: 155 DDVLKLFCILLDN----AKFRRVFSDKYPLILIDEYQDS-------YSPIIERFIKYFIA 203

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                     GD  Q+IY  + A                     K  +I+   +FRS   
Sbjct: 204 EEKGPQFGFFGDAWQTIYQSNKACGVIEHD--------------KLKVIKKGSNFRSAPK 249

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+ +++++         + +                       +     +   +   +  
Sbjct: 250 IVDLLNEIRPDLPQTSAIDDFEGEVFVITCEDYTGPRRADRNFKNELPPEELKSRLNKVT 309

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                  P +    +L   I + +           +     ++ K+   L+   +    I
Sbjct: 310 EKIKQETPADEELKVL--MITHKVLATQQGYEKLLDILNDGLRDKEDPFLLFFMETVEPI 367

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                          +G  R+ +T          L R +    D+      +       +
Sbjct: 368 YHALNTSDMQLLFDTLGIKRYPITKKAEKNKWKELQRQL----DEARKKRAIDVFEI-IN 422

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
              +  I  +      +Y+   +      +  +  +      +  AQF +  DF  
Sbjct: 423 RTKLIPIPPKLDGWYHLYQNTPETIYASNTSIEAFLN-----LDYAQFIAVKDFLH 473


>gi|282908261|ref|ZP_06316092.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282327926|gb|EFB58208.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp.
           aureus WW2703/97]
          Length = 865

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 198/752 (26%), Gaps = 174/752 (23%)

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
            +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 10  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 56

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                  Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 57  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQINPMLRLLKTDVLTTSYLK 112

Query: 447 --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                + +D++F +            + E  +      +   + 
Sbjct: 113 SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 172

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
           VI  I          +    F           +  ++   E  +  L+         +Q 
Sbjct: 173 VIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 232

Query: 542 ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                           +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 233 WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 292

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V+LV                I                 K      +  +       Q
Sbjct: 293 KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 340

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
            +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 341 MDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 400

Query: 694 ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                              +  L + I  D W+         ++     +  +  L  + 
Sbjct: 401 PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLSQGLDYLMSALTFDN 460

Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
           +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 461 ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 520

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
           H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 521 HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 576

Query: 846 YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
            + V                                               I I G+ID+
Sbjct: 577 GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 636

Query: 871 I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
           I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 637 IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 695

Query: 921 V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
               L+Y  V EP++       I ++KL +  
Sbjct: 696 KPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 727


>gi|77407954|ref|ZP_00784704.1| exonuclease RexB [Streptococcus agalactiae COH1]
 gi|77173412|gb|EAO76531.1| exonuclease RexB [Streptococcus agalactiae COH1]
          Length = 1077

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 68/661 (10%), Positives = 182/661 (27%), Gaps = 111/661 (16%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +       +A  I   +              + KDILVL+    D          + 
Sbjct: 300 ECINQKDEVEHVARAIRQKLYQG----------YRYKDILVLL---GDVDSYKLQLSKIF 346

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKI 456
             Y I         +  H  +  + +L R    +      + + K+ ++    +DD+   
Sbjct: 347 EQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEIGQDDLDYF 406

Query: 457 CTQ------RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI--- 507
                    +   +   +++       + +   + + +   +         D    +   
Sbjct: 407 EAYISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDGIKTLNQF 466

Query: 508 --LGAKKGRQQFISRFGNEVIDVLDE--------FLNFTLRNEQNSYSSLQELISELEQY 557
                + G    +SR   ++ +   E        F +   + +         L   L   
Sbjct: 467 MFFLTQVGLSDNLSRLVGQMSENEQEKHQEVWKTFTDILEQFQTIFGQEKLNLDEFLSLL 526

Query: 558 PPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              + +A      A  + V + +    +   +  V+ +      F      K  I     
Sbjct: 527 NSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS---- 582

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                   I  +   +     + +   K        L           L++      +  
Sbjct: 583 --DIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAA----KQALVLTIPQLLNES 636

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           +        ++       + + ++     + N   + A          + +++E T ++ 
Sbjct: 637 EDQMSPYLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQ 696

Query: 734 MDEQKIPKKLFSPI--------------------------KNDINEPYILNPSTIDTKGK 767
                  + L   +                          +   + P  L+ S + T   
Sbjct: 697 TFWSVAVRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDHPLKLSSSALTTFYN 756

Query: 768 TNLESLLSDNQTFN-----------RGLIIHKLLQVI--------------FTLPEHKRK 802
              +  L                   G  +H++ +++                + +  ++
Sbjct: 757 NQYKYFLQYVLGLEEQDSIHPDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQE 816

Query: 803 NFITSYCTKNAK-LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
           +   S  +++A+  +  +  +++  +   +L      T  S +   E+ +   I      
Sbjct: 817 DVFKSLYSEDAESRYSLEILEDIARATATILRQDSQMTVESEEERFELMIDNTIK----- 871

Query: 862 IIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
             I+G ID+I   S  ++ + +YK+      +I+        QL  Y   +     +K +
Sbjct: 872 --INGIIDRIDRLSDGSLGVVDYKSSAQKF-DIQKFYNGLSPQLVTYIDAISR---DKEV 925

Query: 921 V 921
            
Sbjct: 926 E 926


>gi|256826534|ref|YP_003150493.1| hypothetical protein Ccur_00780 [Cryptobacterium curtum DSM 15641]
 gi|256582677|gb|ACU93811.1| hypothetical protein Ccur_00780 [Cryptobacterium curtum DSM 15641]
          Length = 990

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 62/602 (10%), Positives = 149/602 (24%), Gaps = 87/602 (14%)

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML-KSPLFNFSEDDIF 454
           L     IS       +L D    + L+     +     + +       +P         F
Sbjct: 315 LLAQQGISCACQGSKLLCDIDVGRALIDACTLVDDAAAETALAADYSYNPFAGIWYATAF 374

Query: 455 --KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
                 + +      E +   A       Q +I  I +           D    +   + 
Sbjct: 375 YSDKLHRGNRLIEQEELLCDLAGHAEEDLQGLIGLIEQ----------DDLPQALSVLES 424

Query: 513 GRQQFISRFGNEVIDVLDEF--LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH- 569
              +  S       +       ++  +        S  ++I  +E     +     +   
Sbjct: 425 YIVRHFSSQPGYAAEQFAALQYVSRVVEAALAIGKSPAQMIRHVETAQIPLAFDTDSGSQ 484

Query: 570 --NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
             +++      T++   +  V                   I   +         +    +
Sbjct: 485 INDQIDSQIKDTSQIKGTHRVLFCTLDEAAALEPASAHTIIAADMTA--QSYPIVENVDA 542

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
            + +++        +      +     +  A +++++ +  +     +      ++ V D
Sbjct: 543 ADTLLAKWGLVTTDNKMAASRQKFSAALLAARNRVVMQRTMHNGLADEEQPAALFEEVLD 602

Query: 688 SFHNDERVKKIKLTN---SINKDEWIAYEWSTHHPENTPLEREETIKQ--------LMDE 736
            +  D   +    T     I+   +       H  ENT    +    +        +  +
Sbjct: 603 CYRGDPTSRDSDDTTTRVPISLAPFTHLSGEEHLVENTLGHAQRVASETDRPIMGSITPQ 662

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN----------QTFNRGLII 786
            +    L             L+ S I++  +   +                    RG  I
Sbjct: 663 ARSFIVLNRRYHGHTFPGMDLSASQIESYLECPYQWFAKRRLKLESLDEGFGPAERGTFI 722

Query: 787 HKLLQ--------------------------VIFTLPEHKRKNFITSYCTKNAK---LWP 817
           H +L+                                  +R+                W 
Sbjct: 723 HAVLESFYLRFQAEVQPKVTPSTLGQAREVMQAVFSQVAERQFTDRHLVGNRYVPINAWE 782

Query: 818 AKEYKNLLLSITRLLENP-MMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-Q 875
            ++   +L  +   LE    +  +       E +             + GRID+I     
Sbjct: 783 ERQRDKVLDQLLDYLEFECRLLPSFEPW-KFEWAYGEDTPYSYAGCNLVGRIDRIDRDRA 841

Query: 876 QNIFIFEYKT----------HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
             + I +YK+                    +P     Q  IY K ++D+     +   ++
Sbjct: 842 GQVVIIDYKSSLSSAYRLHADSSDESSAFELPAK--MQALIYAKAVRDTL-GCPI-AAIL 897

Query: 926 YV 927
           YV
Sbjct: 898 YV 899


>gi|152985026|ref|YP_001349853.1| DNA helicase [Pseudomonas aeruginosa PA7]
 gi|150960184|gb|ABR82209.1| DNA helicase [Pseudomonas aeruginosa PA7]
          Length = 493

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 30/180 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q  + +L+DE QD + +  ++              H     +  VGD  Q +Y F GA
Sbjct: 187 LSQRFDCMLLDEGQDINPVIADI-------------AHWQRIRMAIVGDPHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E               ++         L  S+R    I  V + + S     + L     
Sbjct: 234 E-----------DALNSDWMVGAEEHYLTQSWRFGPAIAHVANIILSYKGETRKLQGLGP 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN------PQQESWTSYFDSLPQESSASILA 346
            T+  +S          +   V+   ++           +  W    DS        + A
Sbjct: 283 QTLVKKSLPADLPHRTFIHRTVIGVIENALQLVRNHPEPKFHWVGGIDSYSLRDLEDLYA 342


>gi|254238733|ref|ZP_04932056.1| hypothetical protein PACG_04897 [Pseudomonas aeruginosa C3719]
 gi|126170664|gb|EAZ56175.1| hypothetical protein PACG_04897 [Pseudomonas aeruginosa C3719]
          Length = 493

 Score = 64.6 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 30/180 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q  + +L+DE QD + +  ++              H     +  VGD  Q +Y F GA
Sbjct: 187 LSQRFDCMLLDEGQDINPVIADI-------------AHWQRIRMAIVGDPHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E               ++         L  S+R    I  V + + S     + L     
Sbjct: 234 E-----------DALNSDWMAGAEEHYLTQSWRFGPAIAHVANIILSYKGETRKLQGLGP 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDS------QCNPQQESWTSYFDSLPQESSASILA 346
            T+  +S          +   V+   ++           +  W    DS        + A
Sbjct: 283 QTLVKKSLPPDLPHRTFIHRTVIGVIENALHLVRNHPEPKFHWVGGIDSYSLRDLEDLYA 342


>gi|308270741|emb|CBX27351.1| hypothetical protein N47_H21730 [uncultured Desulfobacterium sp.]
          Length = 438

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 19/146 (13%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + +    ++IDE QD S IQ ++   L E          +   +  VGD  Q IY+F   
Sbjct: 51  VAERFPFLIIDECQDLSWIQLQIFMKLIE----------AGSRVHFVGDLNQGIYAFKKV 100

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
            P++V                 F  +EL  + RS   I+ +  K+ +        +    
Sbjct: 101 YPQKVAEF---------AMCHNFETLELSKNLRSVQPIVDLCGKIVNQGNVQGVSTGTID 151

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQH 318
            +  + +   G++  V  W     + 
Sbjct: 152 PSCVYFAYDAGKLQEVVGWFVSYLEE 177


>gi|320532485|ref|ZP_08033307.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135304|gb|EFW27430.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 629

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 93/338 (27%), Gaps = 33/338 (9%)

Query: 19  DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS-LLSSFFLTQK 77
           +    P   VS +++   + ++     I   AQ +    + + +      +         
Sbjct: 218 ERLSEPGVMVSGLDRVARMILQQAGARISPIAQEVIGQPRGRVLTYPRENVWQEVLTLMG 277

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
               + + + +  +   +L   L +      +        +      +           Y
Sbjct: 278 DELPEGLRSADFLESEYELI-VLPQRVTTLKQYLRVRRPGRGVALDRSKRAAVWKAMERY 336

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            +      V  F++ +      L +       R        H+L+DE QD +    +++R
Sbjct: 337 RDRSADLGVTSFDEQLALAAAWLDQEANLGTPR-----PFRHVLVDEAQDLTPAHLQLLR 391

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
           +L E           P  LF   D  Q IY              +           +   
Sbjct: 392 ALVE---------PGPDDLFLAEDSHQRIYG-------------KKITLSHYGIQVRGRS 429

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
             L  ++R+T   L V    F I +       +      H  S       + L     + 
Sbjct: 430 RRLTRNYRTTRQNLDVA---FGILDPGTYEDMEGQAEEHHYVSPRSGPEPLLLHATDRAD 486

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             S+       W    D   ++S+   +A  +      
Sbjct: 487 ELSKAAELLTVWLEQ-DRDSEDSAPETIAVLVRDRYQR 523


>gi|162448467|ref|YP_001610834.1| hypothetical protein sce0197 [Sorangium cellulosum 'So ce 56']
 gi|161159049|emb|CAN90354.1| hypothetical protein sce0197 [Sorangium cellulosum 'So ce 56']
          Length = 1171

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 59/591 (9%), Positives = 141/591 (23%), Gaps = 113/591 (19%)

Query: 445  LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            +      +      +R    ++    +      I++    +  +           P    
Sbjct: 521  IGGLDRWEARLSGFERELRLSLSRAPEDRDAARIARTLADLSALRAFALPLLAALPSPGE 580

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
                G  + R   ++       + +   L             L E+   L +    +   
Sbjct: 581  RATFGEWQRRLSALATRALRRPERVLAVLAELAPMAHVGPVDLGEIRLCLSRRLTDLVLP 640

Query: 565  HSANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             +A  +  + +  +  A+G    VVF+     ++F  K  +   +  +L           
Sbjct: 641  PAARRDGRLFVSPIEGARGRSFDVVFVPGLAERIFPQKVTEDPILRDAL----------- 689

Query: 624  QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                R     D                L + +  A  +L++       ++ +    ++Y 
Sbjct: 690  ---RRTIAGGDSGLDTSDDRVARERLALRLAVGAARQRLVVSYPRVDMDQSRPRVPSFYG 746

Query: 684  MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE--------------- 728
            +              +L     +       W         ++  E               
Sbjct: 747  LELLRAAEGRLPGFGELERRAEQGGAARIGWPAPARPEDAIDAAEHDLALLETLFSLPEA 806

Query: 729  ----------------------TIKQLMDEQKIPKKLFSPIKNDINE-------PYILNP 759
                                    ++ +        LF PI                 +P
Sbjct: 807  QTVGTARYLLNANPHLARALRFRARRWIPGWTSADGLFKPIAEAREALAKHAFGRRSFSP 866

Query: 760  STIDTKGKT---------------NLESLLSDNQTFNRGLIIHKLL-QVIFTLPEHK--- 800
            + +                          + +     RG ++H +L +V+  L +     
Sbjct: 867  TALQHFAACPYRFFLYAVHKLAPRPAPEAIEELDPLQRGRLVHDVLYEVLVALRDAGKLP 926

Query: 801  ----RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN----------PMMTTAMSCDSY 846
                  +   +   +      A+    L  +I R+ ++            +  A     +
Sbjct: 927  LGLPALDEARAELDRALDRVAARYADELAPAIRRVWDDGIASVRADLREWLRRAAEDRDW 986

Query: 847  SEVSVSGKINCPKK-----------------DIIISGRIDQISIS-QQNIFIFEYKTHHH 888
              +        P++                  + + G ID +  S    +   +YKT   
Sbjct: 987  EPIHFELSFGLPRRLATRDPGSSDAPVELDCGVRLRGSIDLVERSVWGAMRATDYKTGKA 1046

Query: 889  VPQEIEHIPYTHIAQLSIYEKILKDSY-PNKSLV-CLLIY-VSEPKVFIIP 936
                   +      Q  +Y   L+    P   +    L Y  S      +P
Sbjct: 1047 RAPRDAVVSGGGTLQPVLYALALEKLMPPGTQVESGRLYYCTSAGGFTEVP 1097


>gi|322435330|ref|YP_004217542.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX9]
 gi|321163057|gb|ADW68762.1| putative DNA repair protein [Acidobacterium sp. MP5ACTX9]
          Length = 896

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 57/505 (11%), Positives = 132/505 (26%), Gaps = 83/505 (16%)

Query: 441 LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP 500
           L +P+   +  +      ++         ++       +    +   +  L   A+   P
Sbjct: 331 LITPIEQLAAAEFDAFTLRQTRLLRPELTLEALLALLPATLPSLSARLRALHRTAKSDLP 390

Query: 501 HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE------- 553
                         +  +   G      LD     T R   ++   L  L  +       
Sbjct: 391 TQQSHAAWSDTF--RALLESAGWTRTAPLDSLAFQTHRRFSSALDELATLDFDGTHPTAA 448

Query: 554 -----LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                  +       A  +++  ++I+       +    ++ +  G   + +       I
Sbjct: 449 AALATFTRILDQTIFAPESHNAPIQILGPLEIGAVPFDALWFLSAGDLTWPNPPSTSPLI 508

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
              L     IP   P                + + Q    R+ +        Q+I     
Sbjct: 509 PWQLQRALNIPGSDPT-------------QSQAAAQTLTTRIAHSA-----SQVIFSYAV 550

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
                 +    +   +        E    +         + I  + +     + PL    
Sbjct: 551 QVDEAHQRPSPSVTALKLTPLKALEAHTTLAP----QPYDIIPDQTTLPPLPDVPLRGGA 606

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
           TI QL             + +   +P  L                       +RG ++HK
Sbjct: 607 TILQLQAACAFRAFAEQRLFSSEPQPRTL------------------GLDPRDRGNLVHK 648

Query: 789 LLQVI------------------FTLPEHKRKNFITSYCTKNAKLWPAK----EYKNLLL 826
           +++ +                   +L      + +          W       +   LL 
Sbjct: 649 VMEELWSCIHDQGELKALTLPARDSLLADCINHALQRTDRLAQSPWDEAYLGTQRTRLLT 708

Query: 827 SITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
            +   L+      A +  +  E +     +     + +S R+D++  +   + I +YKT 
Sbjct: 709 LLRPWLDLEAARPAFAVRAR-EQA---DRHAQLGPLTLSLRMDRVDETDAGLVILDYKTG 764

Query: 887 HHVPQE-IEHIPYTHIAQLSIYEKI 910
              P + +   P     QL +Y  +
Sbjct: 765 VAAPSDWLSDRPDA--PQLPLYAVL 787


>gi|167948709|ref|ZP_02535783.1| DNA-dependent helicase II [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 139

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 6/136 (4%)

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR---FGNEVIDVL 529
                 +  Q  +  I EL   ++  +  D     L   +  + F       G +  + L
Sbjct: 1   MPKRASNALQGFLDLIEELQVESRDMALSDKVAQALAMSRLPEHFEKSRDGKGQDRKENL 60

Query: 530 DEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESP 586
           +E +N   +   E +    L EL + L             A  + V++MT+H+AKGLE P
Sbjct: 61  EELVNACRQFSWEAHEDEELDELSTFLAHAALEAGEAQGDAFDDCVQLMTLHSAKGLEFP 120

Query: 587 VVFLVDTGSQVFSHKH 602
           +VFLV  G    S +H
Sbjct: 121 LVFLVGAGGGAVSPQH 136


>gi|313811487|gb|EFS49201.1| conserved domain protein [Propionibacterium acnes HL083PA1]
 gi|313831228|gb|EFS68942.1| conserved domain protein [Propionibacterium acnes HL007PA1]
 gi|313834250|gb|EFS71964.1| conserved domain protein [Propionibacterium acnes HL056PA1]
 gi|314974104|gb|EFT18200.1| conserved domain protein [Propionibacterium acnes HL053PA1]
 gi|314976606|gb|EFT20701.1| conserved domain protein [Propionibacterium acnes HL045PA1]
 gi|314984269|gb|EFT28361.1| conserved domain protein [Propionibacterium acnes HL005PA1]
 gi|315095448|gb|EFT67424.1| conserved domain protein [Propionibacterium acnes HL038PA1]
 gi|327328494|gb|EGE70256.1| UvrD/Rep helicase [Propionibacterium acnes HL096PA2]
 gi|327444281|gb|EGE90935.1| conserved domain protein [Propionibacterium acnes HL043PA2]
 gi|327444839|gb|EGE91493.1| conserved domain protein [Propionibacterium acnes HL043PA1]
 gi|328759929|gb|EGF73513.1| UvrD/Rep helicase [Propionibacterium acnes HL099PA1]
          Length = 299

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 81/284 (28%), Gaps = 36/284 (12%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y +  + +  + F +        L +    A          +H+L+DE QD +   
Sbjct: 4   LVKKYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAH 53

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           W +IRSL  +          P  +F   D  Q IY       +                 
Sbjct: 54  WRLIRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIM 91

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
            +     L L++R+TA IL     V    E    +  D     +    R  + G   +  
Sbjct: 92  TRGRSRRLTLNYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAH 148

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVI 371
              +  +      +       D   + ++  +  R     + + +              I
Sbjct: 149 PCTTITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSI 208

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                +V+   R      + +  F  +   I +   D     D 
Sbjct: 209 PPGAPVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 252


>gi|146343966|ref|YP_001201822.1| UvrD/Rep family helicase [Pseudomonas fluorescens SBW25]
 gi|146187778|emb|CAM96106.1| putative UvrD/Rep family helicase [Pseudomonas fluorescens SBW25]
          Length = 804

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS----LTEDFFVGKNTHSSPRTLFAV 219
               ++   I ++  H+LID  +D +L     +RS    +         T     +L   
Sbjct: 508 PAVRYVPMSILEQCRHLLIDGAEDQTLPVASWVRSVLIEIRRRDSTQIYTRGLSSSLTVA 567

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q +Y   GA PK     + +            + + L  SFRST  I+     +  
Sbjct: 568 GDPNQWVYGSFGATPKLFFDFEEMFSS-----PVPATKVTLTESFRSTQAIIDAGSNLVQ 622

Query: 280 IPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE 339
                   S  S    +      G+   V++    + Q    C             +  E
Sbjct: 623 NLSLGVNRSPRSIRPPK------GEDQPVRIVGDDLDQLQRICQSAAADGYKVLILIDSE 676

Query: 340 SSASILARRIAYTISNMIGTD 360
              + +   +   I +   + 
Sbjct: 677 VDKAWVDSAVGDQIRDDRASG 697



 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 24/143 (16%)

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELE------QYPPTIKRAHSANHNEVRIMTVHTA 580
           D LD+          + Y  L  + SE++           I+   ++    +R+ + H A
Sbjct: 650 DDLDQLQRICQSAAADGYKVLILIDSEVDKAWVDSAVGDQIRDDRASGGRSIRVRSFHKA 709

Query: 581 KGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
           K LE+ +V +V   S   S  +  +++ +   +           S               
Sbjct: 710 KSLEADIVVMVGDPSTGVSSWYRNQLYKIAGFSSGGDSAPGDTVSHG------------- 756

Query: 641 KSTQEEYNRLLYVGMTRASDQLI 663
                E  RL++V +TRA  + I
Sbjct: 757 -----EALRLVHVAITRARHKCI 774


>gi|224023771|ref|ZP_03642137.1| hypothetical protein BACCOPRO_00487 [Bacteroides coprophilus DSM
           18228]
 gi|224016993|gb|EEF75005.1| hypothetical protein BACCOPRO_00487 [Bacteroides coprophilus DSM
           18228]
          Length = 971

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/400 (12%), Positives = 113/400 (28%), Gaps = 72/400 (18%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++M V   + L+   + ++            +   I  +L    G+     +      
Sbjct: 527 GMQVMGVLETRNLDFRHLIMLSVNEGQLPKSGGEASFIPYNLRKAFGMTTIDHK------ 580

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           I        +   + E   L+Y   T                +  +       M+     
Sbjct: 581 IAVYAYYFYRLLQRAEKVTLVYNTST----------------DGINRGEMSRFMLQFLIE 624

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
            +  V+++ L  + +                   +    ++ + D +  PK   SP   +
Sbjct: 625 WEYPVRRMVLEAAQSPQTTAPITIEKTP------DVMRRMQSVFDVRVNPKAFLSPSALN 678

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFIT 806
                 L          +  + + ++    + G I H   +     +    +   K  I 
Sbjct: 679 CYLDCPLKFYYKYVAQLSAPDEVSAEVDASHFGSIFHDAAEHIYKDLTAHGKVINKEAIE 738

Query: 807 SYCTKNAKL--------------WPAKEYKNL--LLSITRLLENPMMTTAMSCDSY---- 846
           +      +L               P +E      +  I   +    +   +  D      
Sbjct: 739 TLLKDEVRLQEYVDNGFKKLFFNIPKEERAEYNGIQLINSAVITRYLKQLLENDLRYAPF 798

Query: 847 ----SEVSVSGKINCPKKDIIIS----GRIDQISISQQNIFIFEYKT--HHHVPQEIEHI 896
               SE  VS  I+      I+     G ID++      + I +YKT      P  +E +
Sbjct: 799 TFSGSEHFVSEDIDIRTPRGILKSRIGGIIDRLDTKDGTLRIVDYKTGGDADTPANVESL 858

Query: 897 ------PYTHIAQLSIYEKI----LKDSYPNKSLVCLLIY 926
                    ++ Q  +Y  I    L++   +  +   L+Y
Sbjct: 859 FLPDKKRSAYVFQTFLYASIVCRKLREKGSDLRVAPSLLY 898


>gi|156350035|ref|XP_001622114.1| hypothetical protein NEMVEDRAFT_v1g248561 [Nematostella vectensis]
 gi|156208547|gb|EDO30014.1| predicted protein [Nematostella vectensis]
          Length = 1020

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 45/190 (23%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +  +   +   +   +    A  +            + D +DL       L+        
Sbjct: 469 LDPKQKYFDSDEYIHSVTRDAAAIWER---------MCDPDDLE------LRMTHDGYLK 513

Query: 170 RYKIDQ----EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
            Y++        + +LIDE QD +    +++                P     VGD  Q 
Sbjct: 514 LYQLSNPVIDGYDCLLIDEAQDCTPAASDILLR-------------QPCAKILVGDPYQQ 560

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
           IY F GA             K A    Q      L  SFR   +I  V + +        
Sbjct: 561 IYGFRGA-------------KNAMEMVQSTRTFYLTQSFRFGPEIAYVANCILESLMGVH 607

Query: 286 GLSEDSTTTI 295
             +       
Sbjct: 608 RKTLVGGAKP 617


>gi|298385198|ref|ZP_06994757.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 1_1_14]
 gi|298262342|gb|EFI05207.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 1_1_14]
          Length = 686

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 30/172 (17%)

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             +KN +L++ D+       L           +    I H+LIDE+QD S IQ++VI+ L
Sbjct: 435 KMRKNRMLEYADMAPLAYLHLALDG------NRTQTHIRHLLIDEMQDYSPIQYKVIQKL 488

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                        P     +GD  QS+  +  +    + +                 +++
Sbjct: 489 Y------------PCRKTILGDASQSVNPYGSSTAAMIQKA-----------FTTGEVMK 525

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGL-SEDSTTTIRHRSSRIGQVGTVQL 310
           L  S+RST +I ++  K+ +  E    +   +    +  +++     G V L
Sbjct: 526 LCKSYRSTFEITSLAQKIQANNELEPIMRHGEQPEILPFKNTEEETTGLVNL 577


>gi|237716367|ref|ZP_04546848.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407969|ref|ZP_06084517.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644252|ref|ZP_06722021.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294807962|ref|ZP_06766741.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229444014|gb|EEO49805.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354777|gb|EEZ03869.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640416|gb|EFF58665.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294444846|gb|EFG13534.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 959

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 97/839 (11%), Positives = 226/839 (26%), Gaps = 142/839 (16%)

Query: 148 DFEDL---IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
           DF+D+   +++ + L                     L+D+ +     Q E I+   ++F 
Sbjct: 105 DFDDVDKNMVDADKLFSNLQDLKN------------LMDDYEFLDKEQEEAIQQFFQNFS 152

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS- 263
           + + T    + +        S++   G                      +  I +L    
Sbjct: 153 IERRTELKEKFI--------SLWDKLGTIYHHYRENLTELGIAYEGMLYRNVIEQLDTDQ 204

Query: 264 ----------FRSTADILTVV-DKVFSIPENA-QGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                     F    ++L  V ++ F   ++A + L          +  R  + G     
Sbjct: 205 LKYDKYIFVGF----NVLNKVENEFFRKLKDAGKALFYWDYDIFYTQQIRKHEAGEFLKR 260

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                 ++   +                S+ +  AR +   I  +    +  +  K++  
Sbjct: 261 NLGEFPNELPESFFDTFKEPKKIRYISASTENAQARFLPEWIKMITDNHSQIAEEKEK-- 318

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             ++ +VL  +    P++  + + +KN     V     F L        + A      + 
Sbjct: 319 --ENAVVLCNEALLLPVLHSIPQEVKN-----VNITMGFPLAQTPIYSFINAAMELQTNG 371

Query: 432 EDDL-------SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHV 484
                      +   +LK P                     + +  + +      K    
Sbjct: 372 YRSDTGRFTYEAVSAILKHPY------TRQISSHAGPLERELTKTNRFYPLPSELKQDDF 425

Query: 485 IKYIHELIHIAQFCSPHDF-----FTLILGAKKGRQQFISRFGNEV----IDVLDEFLNF 535
           +  +    +  +    +        + I   +       ++   E        ++   + 
Sbjct: 426 LATLFTPRNGIKELCDYLIELIKDISTIYRKEGEYNDIFNQLYRESLFQSHTKINRLYSL 485

Query: 536 TLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTG 594
               E +    +L+ LI+++                 +++M V   + L+   + ++   
Sbjct: 486 IESGELSIRTDTLKRLITKVLTASNIPFH--GEPAIGMQVMGVLETRNLDFRNLIILSLN 543

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
                    +   I  +L    G+     ++              +   + E   LLY  
Sbjct: 544 EGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAENITLLY-- 595

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                         NTS++  +       M+         + +  L    +       + 
Sbjct: 596 --------------NTSSDGLNRGEESRFMLQLLVEGPHDITREYLEAGQSPQSIQEIQI 641

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL 774
                     E    I +  D       + SP   +      L        G    + + 
Sbjct: 642 EKTP------EVLRRIYRTYDSTNPSSVILSPSALNAYLDCRLRFYYRYVAGLKTPDEVS 695

Query: 775 SDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKLWP-------AKEYKN 823
           ++  +   G I H   Q+    +    +  +K  I        KL          + +K 
Sbjct: 696 AEIDSALFGTIFHLSAQLAYTDLTANGKMIQKEDIERLLRNEVKLQSYVDQAFKEELFKV 755

Query: 824 LLLS-----ITRLLEN----PMMTTAMSCDSY----------SEVSVSGKINCPKKDIII 864
                      +L+ +      +   +  D             +VS    I   +    +
Sbjct: 756 APEEKPEYNGIQLINSKVIVSYLKQLLRNDLQYTPFEMVAMEKKVSEEITIQTGQGPFTL 815

Query: 865 S--GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEKILKD 913
              G ID++   +  + I +YKT      P  IE +         +I Q  +Y  I+  
Sbjct: 816 RLGGTIDRMDAKESTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSR 874


>gi|189485568|ref|YP_001956509.1| hypothetical protein TGRD_565 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287527|dbj|BAG14048.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 248

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 52/154 (33%), Gaps = 10/154 (6%)

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCT--KNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            G IIHK L+      E         Y    +N      ++         R+L +    +
Sbjct: 40  FGHIIHKALEKFHVGKEQSYDMLFECYDDAWRNDGFADPQQIFEYYECGRRMLAS-YYKS 98

Query: 840 AMSCDSYSEV-SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIP 897
             + D  +EV  V    +         G ID++         I +YKTH  + ++     
Sbjct: 99  FNASD--TEVIYVEKAFDANIGKYKFIGIIDRVDRYPDGKYEIVDYKTHAKIWEQERVDK 156

Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
                QLS Y    K+ +        + ++SE K
Sbjct: 157 D---LQLSFYVYACKNVFGFDPDKISVYFLSENK 187


>gi|74178225|dbj|BAE29898.1| unnamed protein product [Mus musculus]
          Length = 511

 Score = 64.6 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 110/401 (27%), Gaps = 40/401 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   V  I+   +  +      + + A+ +  A +T         L    L   
Sbjct: 101 ASALGQPGVYVIGIDALANAVVREAGADVAEAAEGVLGAPRTDLSRRTSQWLWRDVLDHA 160

Query: 78  F--TPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
               P++    + +  +   +   L ++     +        + F+           L  
Sbjct: 161 GPEVPERLAHHRLLETEYEQVI--LPQNITTREEYLRARRPGRGFRLNRRDRDAVWTLVK 218

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  + +  + F +        L +    A          +H+L+DE QD +   W +
Sbjct: 219 KYRDDSRISGTISFPEAAAIAAQYLTRHSPLA----------DHVLVDEGQDLTPAHWRL 268

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q +Y       +                  + 
Sbjct: 269 IRSLVPE---------GPNDIFIAEDSHQRMYGHRLVLSRY-------------GIMTRG 306

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L +R+TA IL     V    E    +  D     +    R  + G   +     
Sbjct: 307 RSRRLTLKYRTTAQILRWSTHV---LEGGFYVDLDGDDDDKLSGYRSARRGPDVIAHPCT 363

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAK 374
           +  +      +       D   + ++  +  R     + + +              I   
Sbjct: 364 TITEEFDYLAKVVGQWAKDRQSETTAVLVRDRSQRERVVDALHERGVQTRAVGHGSIPPG 423

Query: 375 DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
             +V+   R      + +  F  +   I +   D     D 
Sbjct: 424 APVVMTMHRAKGIEFSKVFLFGVSSRSIPMGIKDYDFDKDE 464


>gi|94987516|ref|YP_595449.1| endonuclease [Lawsonia intracellularis PHE/MN1-00]
 gi|94731765|emb|CAJ55128.1| RecB family exonuclease [Lawsonia intracellularis PHE/MN1-00]
          Length = 979

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 96/359 (26%), Gaps = 44/359 (12%)

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +           +     ++++ +   + L    VFL+D          I+   +  SL 
Sbjct: 516 VALIHDERVPFEADPITGLQVLGMLETRLLHFSKVFLIDVTDDQLPGNPIRSSLLPDSLR 575

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              G+P    +          L+   K+                    + +         
Sbjct: 576 KILGLPNAHDRDVLTAYTFYRLLAGAKE--------------------VYLYWQEGIE-- 613

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
              +           F  +   ++ +   S           +          R   IK  
Sbjct: 614 --VSNSFEGKKQKSRFVEEILWEEEQSIGSQITPGDYILNIAKPEVSPPLRRRRHIIKTP 671

Query: 734 MDEQKIPKKLFSPIKN---DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL 790
             ++++   L  P+     D      L            +E +  D+   + G ++HK+L
Sbjct: 672 AIQRQLNSILSHPVSATQLDTYLMCPLRFYFERVAMVRPVEVVNEDDDPASVGQLLHKVL 731

Query: 791 QVIF------TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN---PMMTTAM 841
           +V F         +    N          +L  +    +L    + +L       +   +
Sbjct: 732 KVFFMDYVGKECIKEDLSNERLRML-FKEELLSSGLINSLPPESSMMLSLSGPEKLVRFL 790

Query: 842 SCD------SYSEVSVSGKINCPKKDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEI 893
           S         Y E      +       ++ G +D++     + + IF+YKT        
Sbjct: 791 SRQPDKTKIIYLEKYFQATLQINGNTRVLEGILDRVDKRGNEGVIIFDYKTGRIKNNSD 849


>gi|145633193|ref|ZP_01788924.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 3655]
 gi|144986039|gb|EDJ92629.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 3655]
          Length = 356

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 37/177 (20%)

Query: 774 LSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRL-L 832
           L   +    G  +H+  +  +       +       +       A+  +N L  I+   L
Sbjct: 129 LDLPRGKQVGTALHRHFENCYFSDLANTEEIDKLRQSLQLDETFAEPLQNWLQQISHTSL 188

Query: 833 ENP---MMTTAMSCDSYSEVSV------------------------SGKINCPKKDIIIS 865
            N     +    + D   E+                          S  +   +   ++ 
Sbjct: 189 SNEIGIALADLANKDCIKEMPFYLAIREHFDVEAFNRALKAHHHLPSKPLQFEQIQGMVR 248

Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
           G ID +       ++ +YK++              + E +   +  Q  IY   L  
Sbjct: 249 GSIDLVFRHNGKYYLVDYKSNFLGSTLADYNQEALKKEMLHSHYDWQYLIYTLALHR 305


>gi|9625499|ref|NP_039733.1| predicted 33.2Kd protein [Mycobacterium phage L5]
 gi|465349|sp|Q05283|VG69_BPML5 RecName: Full=Gene 69 protein; AltName: Full=Gp69
 gi|579143|emb|CAA79445.1| gene 69 [Mycobacterium phage L5]
          Length = 290

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/197 (10%), Positives = 51/197 (25%), Gaps = 57/197 (28%)

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITS----YCTKNAKLWP--------------------A 818
           G   H + +V        R+  +      +  + AK                        
Sbjct: 45  GTAFHTVAEVYEKALAEGREMSLERAQEIFREEYAKDIGALCDETPNFEWWFWSGPYNGE 104

Query: 819 KEYKNL----LLSITRLLEN--PMMTTAMSCDSY---------------SEVS---VSGK 854
           ++ +      L  + + +           +                    E     +   
Sbjct: 105 RDIERRFHLGLEQVEKFIAWRKDKGQQIWTTPGRGICSTEAWKDTNCKECEQPKPAIELP 164

Query: 855 INCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            N     I + G ID + +    + + +YKT +    +          QL +Y   +  +
Sbjct: 165 FNIELDGIRVRGFIDAVVVVNGELRVRDYKTGNSPGDD---------FQLGVYALAVAMT 215

Query: 915 YPNKSLVCLLIYVSEPK 931
           Y  ++      +++  K
Sbjct: 216 YDVEAPKTGDYFMAGKK 232


>gi|25010944|ref|NP_735339.1| exonuclease RexB [Streptococcus agalactiae NEM316]
 gi|81457035|sp|Q8E5U0|ADDB_STRA3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|23095323|emb|CAD46534.1| unknown [Streptococcus agalactiae NEM316]
          Length = 1077

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 69/661 (10%), Positives = 184/661 (27%), Gaps = 111/661 (16%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +       +A  I   +              + KDILVL+    D          + 
Sbjct: 300 ECINQKDEVEHVARAIRQKLYQG----------YRYKDILVLL---GDVDSYKLQLSKIF 346

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKI 456
             Y I         +  H  +  + +L R    +      + + K+ ++   S+DD+   
Sbjct: 347 EQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYF 406

Query: 457 CTQ------RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI--- 507
                    +   +   +++       + +   + + +   +         D    +   
Sbjct: 407 EAYISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLAPLESFVKTKKQDGIKTLNQF 466

Query: 508 --LGAKKGRQQFISRFGNEVIDVLDE--------FLNFTLRNEQNSYSSLQELISELEQY 557
                + G    +SR   ++ +   E        F +   + +         L   L   
Sbjct: 467 MFFLTQVGLSDNLSRLVGQMSENEQEKHQEVWKTFTDILEQFQTIFGQEKLNLDEFLSLL 526

Query: 558 PPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              + +A      A  + V + +    +   +  V+ +      F      K  I     
Sbjct: 527 NSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS---- 582

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                   I  +   +     + +   K        L           L++      +  
Sbjct: 583 --DIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAA----KQALVLTIPQLLNES 636

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           +        ++       + + ++     + N   + A          + +++E T ++ 
Sbjct: 637 EDQMSPYLIELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQ 696

Query: 734 MDEQKIPKKLFSPI--------------------------KNDINEPYILNPSTIDTKGK 767
                  + L   +                          +   ++P  L+ S + T   
Sbjct: 697 TFWSVAVRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYN 756

Query: 768 TNLESLLSDNQTFN-----------RGLIIHKLLQVI--------------FTLPEHKRK 802
              +  L                   G  +H++ +++                + +  ++
Sbjct: 757 NQYKYFLQYVLGLEEQDSIHPDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQE 816

Query: 803 NFITSYCTKNAK-LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
           +   S  +++A+  +  +  +++  +   +L      T  S +   E+ +   I      
Sbjct: 817 DVFKSLYSEDAESRYSLEILEDIARATATILRQDSQMTVESEEERFELMIDNTIK----- 871

Query: 862 IIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
             I+G ID+I   S  ++ + +YK+      +I+        QL  Y   +     +K +
Sbjct: 872 --INGIIDRIDRLSDGSLGVVDYKSSAQKF-DIQKFYNGLSPQLVTYIDAISR---DKEV 925

Query: 921 V 921
            
Sbjct: 926 E 926


>gi|160946301|ref|ZP_02093510.1| hypothetical protein PEPMIC_00261 [Parvimonas micra ATCC 33270]
 gi|158447417|gb|EDP24412.1| hypothetical protein PEPMIC_00261 [Parvimonas micra ATCC 33270]
          Length = 1152

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 108/871 (12%), Positives = 232/871 (26%), Gaps = 209/871 (23%)

Query: 180 ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
           I +DE  D +  Q+ VI  L                         +IY     + K +  
Sbjct: 202 IFVDEYMDFTPAQYLVIEKLIYFSK--------------------NIYFSLLTDFKNLHS 241

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
           +  +                     RS + IL               +      ++ + S
Sbjct: 242 KMNMFL-------------------RSNSTILN-----IKNICEKYNIPLLENISLSNES 277

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
               +          + ++    +P+     S    + +  +       IA  IS ++  
Sbjct: 278 YYNSED------LSFLEKNIGSFSPKVYFKDSENIRILKFKNIYDEVSFIAEEISKLV-- 329

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                  K +  +  DI + +R   +    +++   + +DY I    +++  + ++  I 
Sbjct: 330 -------KIKGYRYNDITLCMRSLDE---YSYIIERVFDDYNIDYFLDEKISIMENPIII 379

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGI- 478
            ++++           S    LKS L   S++DIF +                 +     
Sbjct: 380 LILSILDMKDKNYSYDSVFRYLKSGLTGVSDEDIFLLENYVIANGIKGNRWFDESWNKSI 439

Query: 479 ------------------------SKFQHVIKYIH----------ELIHIAQFCSPHDFF 504
                                   S  +++ + +            L          D  
Sbjct: 440 VHSVEEESDDEKLVKINEIKNIVISPIKNLHEKLKGRNTVKDICKYLYEFTLEIGLFDRI 499

Query: 505 TLIL-----GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             ++          + +  S+       VLDE + F    +      +  + +ELE    
Sbjct: 500 NNLVMNFQNEGNLYKAKEYSQVWGSFTAVLDEMVEFMGEEKIAYSKFINLIKTELENIEL 559

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
            I      + +EV I TV   K   + + F++      F    +    I  +  +     
Sbjct: 560 GIVPP---SKDEVFITTVDRMKKPSTKIAFVLGVNDGNFPKNIVDNDLISENEKESLKTM 616

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
            +   + +                  +   L Y   + A ++L I    +    K     
Sbjct: 617 GFNFSNNN-------------LLKTTDEQFLSYKTFSIAKEKLYITFPISDLEGKSLLVS 663

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP---------------ENTPL 724
            +   +   F N E      L +    D +  +     +                EN   
Sbjct: 664 RFVKKIKFIFENLEVESIDYLKDFSIMDIFETFSKERLYQILVSNIEALNSNKLSENDKF 723

Query: 725 EREETIKQLMDEQKIPKKLF---------------SPIKNDINEPYILNPSTIDTKGKTN 769
              E I  L++++    K+                    + + E   ++ S ++   +  
Sbjct: 724 NFREIIDFLIEDKDYKYKIEILKDKLNYKKETENIKDYTSFLYESGNVSISKLENFMRCP 783

Query: 770 L-----------ESLLSDNQTFNRGLIIHKLLQVIF---TLPEHKRKNFITSYCTKNAKL 815
                       E  + D    + G   HK+    F                +  +  + 
Sbjct: 784 FSYFINYGLRAKEREVYDFSPADYGTYCHKIFDDFFKGIFENNIDWNIIDREFIQREVEK 843

Query: 816 WPAKEYKNLLLSITRLLEN-PMMT--------------TAMSCDSYS----EVSVSGKIN 856
                 K +      +LE+ P                   M+               +  
Sbjct: 844 LT----KKMAEKSNFILESSPKYKYFSTITQKNIVESIEIMAEQVRRGNFVPTGFETEFG 899

Query: 857 CP-----------KKDIIISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHI 901
                         K+I + G+ID+I + +      + I +YK+      ++  +     
Sbjct: 900 DESIKPITYTLKNGKEIKLVGKIDRIDVFKGENFDFLRIIDYKSSKR-DIDLNQVYAGLQ 958

Query: 902 AQLSIYEKIL----KDSYPNKSLVCLLIYVS 928
            QL +Y   +    K+ Y  K     L Y  
Sbjct: 959 LQLFVYMNAILSSNKERY--KP--AGLFYSD 985


>gi|118594718|ref|ZP_01552065.1| Inactivated superfamily I helicase-like protein [Methylophilales
           bacterium HTCC2181]
 gi|118440496|gb|EAV47123.1| Inactivated superfamily I helicase-like protein [Methylophilales
           bacterium HTCC2181]
          Length = 880

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 63/592 (10%), Positives = 166/592 (28%), Gaps = 100/592 (16%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R +   I   +  ++I+ +  +R + ++ I+     R    L+    +      KI    
Sbjct: 257 REVNPEIFKNLSKESIYDSDLQRPLTSEPII-----RAGLQLLELTQQAQMIKPKIIYEC 311

Query: 407 NDRFILTDHLAIKD---LMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHET 463
                  D+    +   L    +   +                 +S   I  I     + 
Sbjct: 312 LLFNNWIDNRFYAEREKLGNYLKLKNNPS---------------YSIHSIQHIIDNDPKL 356

Query: 464 ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           + +     K     + K++ +      L               +    K  +  I+   +
Sbjct: 357 KDLELDSLKDTLKILKKYRKLWSKSLRLREWVYQ------IEALWNEIKFSE--INFLLS 408

Query: 524 EVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQYPPTIKRAHSANHNE---VRIMTVHT 579
             I+ L+       + + N     L E  + L+     ++   +   +    + I   + 
Sbjct: 409 FEINNLNSLYASLHQLKNNEVVDGLIEFKTFLKLLFIHLESWPAPKKDGQSLIDIKGFYE 468

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
               E   ++L++     +  K +    +               + + + +I  +     
Sbjct: 469 NPIKEYDAIWLMNMNDNHWPGKLMFNSLL-------------PMKLQKKYHIFDEEYYKQ 515

Query: 640 KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
             +  ++  +              +    + ++E  +      +   D        K+I+
Sbjct: 516 INTVHQDRLKKF----GPN-----LTISFSQTDEDGNPLFCSNNYFSDIKEGLITKKRIE 566

Query: 700 LTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP 759
              S+N  ++I   ++        + R     +   +        + +    ++      
Sbjct: 567 GKKSLNDVDFILDNYAPEVTGEKKISRGTACLENFQKCPAWAFYENRLGAFKSQ------ 620

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----------IFTLPEHKRKNFITSY- 808
                      E  + +     RG I H+LL+           + ++ + + KN IT   
Sbjct: 621 -----------EDEVEELSPMARGTIAHELLEAFWRKYKNSEVLKSMSDEQIKNNITQII 669

Query: 809 ------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV----SVSGKINCP 858
                    +       + K       RLL            ++  +    S        
Sbjct: 670 EGKLKTLEASLPFLSPFQIKVQSNYFNRLL----FNWLSYEKNHRGIFKVSSTEKAFTAN 725

Query: 859 KKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
              +    +ID++   +  ++ + +YKT    P   ++       QL +Y  
Sbjct: 726 IGRLSFKLKIDRVDEYTDGSMIVIDYKTGSTTPNLSDYQGTIKSLQLPLYAA 777


>gi|302771293|ref|XP_002969065.1| hypothetical protein SELMODRAFT_409873 [Selaginella moellendorffii]
 gi|300163570|gb|EFJ30181.1| hypothetical protein SELMODRAFT_409873 [Selaginella moellendorffii]
          Length = 664

 Score = 64.6 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 26/104 (25%)

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
             +      ++L+DE QDTS++Q++++R L           S    +  VG +   I SF
Sbjct: 104 LAECHNTWAYVLVDEFQDTSVMQYKLLRLL-----------SLHGRVTVVGSD---ITSF 149

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           +G         +                +    ++RST  I+  
Sbjct: 150 NGG----FSTFRNDVPNY--------KEVRPQQNYRSTGCIVEA 181


>gi|319744910|gb|EFV97243.1| exonuclease RexB [Streptococcus agalactiae ATCC 13813]
          Length = 1077

 Score = 64.2 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 69/661 (10%), Positives = 184/661 (27%), Gaps = 111/661 (16%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +       +A  I   +              + KDILVL+    D          + 
Sbjct: 300 ECINQKDEVEHVARAIRQKLYQG----------YRYKDILVLL---GDVDSYKLQLSKIF 346

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKI 456
             Y I         +  H  +  + +L R    +      + + K+ ++   S+DD+   
Sbjct: 347 EQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYF 406

Query: 457 CTQ------RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI--- 507
                    +   +   +++       + +   + + +   +         D    +   
Sbjct: 407 EAYISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDGIKTLNQF 466

Query: 508 --LGAKKGRQQFISRFGNEVIDVLDE--------FLNFTLRNEQNSYSSLQELISELEQY 557
                + G    +SR   ++ +   E        F +   + +         L   L   
Sbjct: 467 MFFLTQVGLSDNLSRLVGQMSENEQEKHQEVWKTFTDILEQFQTIFGQEKLNLDEFLSLL 526

Query: 558 PPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              + +A      A  + V + +    +   +  V+ +      F      K  I     
Sbjct: 527 NSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS---- 582

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                   I  +   +     + +   K        L          +L++      +  
Sbjct: 583 --DIERQLINDANDTDGHFDIMTQENLKKNHFAALSLFNAA----KQELVLTIPQLLNES 636

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           +        ++       + + ++     + N   + A          + +++E T ++ 
Sbjct: 637 EDQMSPYLVELRNIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQ 696

Query: 734 MDEQKIPKKLFSPI--------------------------KNDINEPYILNPSTIDTKGK 767
                  + L   +                          +   + P  L+ S + T   
Sbjct: 697 TFWSVAVRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDHPLKLSSSALTTFYN 756

Query: 768 TNLESLLSDNQTFN-----------RGLIIHKLLQVI--------------FTLPEHKRK 802
              +  L                   G  +H++ +++                + +  ++
Sbjct: 757 NQYKYFLQYVLGLEEQDSIHPDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQE 816

Query: 803 NFITSYCTKNAK-LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
           +   S  +++A+  +  +  +++  +   +L      T  S +   E+ +   I      
Sbjct: 817 DVFKSLYSEDAESRYSLEILEDIARATATILRQDSQMTVESEEERFELMIDNTIK----- 871

Query: 862 IIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
             I+G ID+I   S  ++ + +YK+      +I+        QL  Y   +     +K +
Sbjct: 872 --INGIIDRIDRLSDGSLGVVDYKSSAQKF-DIQKFYNGLSPQLVTYIDAISR---DKEI 925

Query: 921 V 921
            
Sbjct: 926 E 926


>gi|167718948|ref|ZP_02402184.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei
           DM98]
          Length = 231

 Score = 64.2 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 79/227 (34%), Gaps = 9/227 (3%)

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNE 540
           ++       + +       +  +    +  ++ ++    E      + L E        +
Sbjct: 7   VERFSRYRLLWRERGFAVMWRTLASELRIAERLMAGADGERRVTDVNHLAELTQARASAQ 66

Query: 541 QNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                +L+ L +  LE      +    ++ N V+I+TVH +KGLE  +VF          
Sbjct: 67  PGIAPTLRWLAAQRLEGGGDDAQLRLESDRNLVQIVTVHKSKGLEYAIVFCPFLNDGGLR 126

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                 +      +D+ G  +        +       +   +    E  RL+YV +TRA 
Sbjct: 127 EPAGSGLPDAREYHDESGCAVLHYGC--DDEAAERASREAVREQAAERARLVYVALTRAV 184

Query: 660 DQLIICK--HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
            +  +    + ++ + K++ +     +V  +  + +   K    ++ 
Sbjct: 185 YRCYLVAGTYQSSRSTKEARRSVLNWLVAGAGRDFDAWLKEPPEDAE 231


>gi|54295115|ref|YP_127530.1| hypothetical protein lpl2195 [Legionella pneumophila str. Lens]
 gi|53754947|emb|CAH16435.1| hypothetical protein lpl2195 [Legionella pneumophila str. Lens]
          Length = 858

 Score = 64.2 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 66/615 (10%), Positives = 163/615 (26%), Gaps = 93/615 (15%)

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
              QE+     A+        ++     +   K +  + +  +V+    +++ ++  + R
Sbjct: 217 EENQETPEVFSAKDKKTEYQELM----TWLEKKIQQGKKQIGVVVPNLEQESSVLQRILR 272

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
                       +    L+    I   +       +  ++     +L+SP    ++D+  
Sbjct: 273 DCFEPNL--FNISLGKPLSAFHLISHALIWLSLDHNLLNNHQAALLLQSPYLGKAKDEFL 330

Query: 455 KICTQRHETETVYEY------IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLIL 508
           +      E++ + +         +       K   ++K ++            + F   L
Sbjct: 331 QRSDYLQESKLLQDQSFPTKLFIEDIAYHTPKLAELLKNMNFYPEKTTLDEWIELFQERL 390

Query: 509 GAKKGRQQFISRFGNEVIDV-----LDEF--LNFTLRNEQNSYSSLQELISELEQYPPTI 561
                   ++    +           DEF  L+          +        L+Q     
Sbjct: 391 NGIGFPGDYVLNSEDYQCFNRFTMIFDEFRQLSLISSYLTKKEA-----FEALKQLIDNT 445

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                 +++ ++I+ +  A G E   ++++    +    +      I   L  + G+P  
Sbjct: 446 IFQPQKSNSPIQILGLLEASGCEFDSLWVMGLSDRCLPQQTRLSPFIPFELQRELGMPHS 505

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           IP        +    + L++               R S + +        +         
Sbjct: 506 IPAR-----ELQYAKQILQRLQ-------------RGSVETVFSYPQFEDDTPNLPCSLI 547

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
                      +    ++      ++ +             P++ +E+I           
Sbjct: 548 THYPAYLSRPADNKTNVQSCLVPLEENY-----------EVPVKPDESISGGTSLLSNQA 596

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ---------- 791
           K                           +           +G +IHK+L+          
Sbjct: 597 KCPFKALAQHRL------------KANPVLKTTDGMDDKEKGQLIHKILELLWQRLENQE 644

Query: 792 VIFTLPEHKRKNFITSYCT------------KNAKLWPAKEYKNLLLSITRLLENPMMTT 839
            +  L   + + FI                     L    EY  L   I   LE      
Sbjct: 645 QLIKLKPAELEQFIDQAIQDALNPIRQRHSQAFPDLVANVEYMRLKRIILSYLEWEKQRP 704

Query: 840 AMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
                   E   +  IN    D  +  R+D++       ++ +YK+     +        
Sbjct: 705 PFKITGLEE---NHSINLAGLDFKV--RVDRLDEVGNKQWVIDYKSTLPGGKPWNEERP- 758

Query: 900 HIAQLSIYEKILKDS 914
              QL +Y  + +  
Sbjct: 759 MEPQLLLYALLNEQI 773


>gi|23009340|ref|ZP_00050425.1| COG3893: Inactivated superfamily I helicase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 643

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/394 (12%), Positives = 96/394 (24%), Gaps = 40/394 (10%)

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHN 570
             G +  I     + +D L + L    R E     S             T+  A    H 
Sbjct: 221 MDGPEDEIDDPSLDSLDGLFDDLEAAAREELPGRFSDYAAFFTALARDRTVACAQRNAHP 280

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +RI+    A+ L    + L      V+  +      +   +    G+     +     +
Sbjct: 281 RLRILGPLEARLLSVDRIVLGGLDEAVWPVRQTTDAFLNRPMRGQVGLSPPERRIGQAAH 340

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                +                  +TRA+ +           E      + +     +F 
Sbjct: 341 DFVQALGTHDA------------VVTRAAKR-----------EGSPTVPSRFLQRLRAFG 377

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
            D    +        +    A +     P                +  +  +  S  + +
Sbjct: 378 GDAVWSEAVGRGQRLRRLAAALDRGREAPPPRLKR-----PAPKPDPALFPERLSVTEIE 432

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-- 808
                  +       G   LE L        RG +IHK+L                +   
Sbjct: 433 TLVRDPYSIFAKHILGLEALEPLAVVPGAAERGSLIHKILGDFSQAHPGALPAAAETLLY 492

Query: 809 ---------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
                             A+ +          LE            ++E S    I   +
Sbjct: 493 AIALDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRRSIRAIHAERSGKLTIPLGE 552

Query: 860 KDIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQE 892
           +   +S R D+I   +     I ++KT       
Sbjct: 553 RTFTLSARADRIEQRADGGFCIVDFKTGTPPSNR 586


>gi|213025689|ref|ZP_03340136.1| exonuclease V subunit beta [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 213

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/209 (9%), Positives = 57/209 (27%), Gaps = 29/209 (13%)

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
           D W     S        L+R       +      ++    +  D+     ++ + +    
Sbjct: 5   DRWQIAAASHAELSARTLQRLLYDSWRVTSYSGLQQRGHSVAQDLIPRLDIDAAGVGEAA 64

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL 826
           +    +     +  + G  +H L + +        +           +          L 
Sbjct: 65  EAPAMTPHHFPRGASPGTFLHSLFEELDFTQPIDPQWVQEKLELSGFETRWEPVLTRWLD 124

Query: 827 SITRLLENPM---MTTAMSCDSYSEV----SVSGKINCPKKDIIIS-------------- 865
           ++  +  N     ++     +   E+     ++  +   + D +I               
Sbjct: 125 TVLHVPLNETGVSLSVLTEREKQVEMEFYLPIAQPLTAGELDALIRRYDPLSAGCPALDF 184

Query: 866 --------GRIDQISISQQNIFIFEYKTH 886
                   G ID +   +   ++ +YK++
Sbjct: 185 MQVRGMLKGFIDLVFRYEGRYYLLDYKSN 213


>gi|260836597|ref|XP_002613292.1| hypothetical protein BRAFLDRAFT_68257 [Branchiostoma floridae]
 gi|229298677|gb|EEN69301.1| hypothetical protein BRAFLDRAFT_68257 [Branchiostoma floridae]
          Length = 3263

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 28/173 (16%)

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             +   Y+  K++  + D  D + N    L   +   W        I+ + +DE QD +  
Sbjct: 1386 DIFQTYQHEKRQRHMFDEMDFVHNLYKRLAHAEDVDW-------SIHQVYVDETQDFTQA 1438

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
            +  ++     D          P  +F  GD  QSI    G   +     + +  K   + 
Sbjct: 1439 ELALLIRCCRD----------PNEMFFTGDTAQSIM--RGVSFRFK-DLRSLFHKARESL 1485

Query: 252  GQKFSI--------IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
             Q              L  ++RS   IL +   V  + E     S D     R
Sbjct: 1486 QQMGKRTAVQVPDMYHLTHNYRSHCGILDLAAGVIKLLERFFPYSFDHLPKDR 1538


>gi|153855944|ref|ZP_01996895.1| hypothetical protein DORLON_02920 [Dorea longicatena DSM 13814]
 gi|149751792|gb|EDM61723.1| hypothetical protein DORLON_02920 [Dorea longicatena DSM 13814]
          Length = 489

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 72/524 (13%), Positives = 150/524 (28%), Gaps = 94/524 (17%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +   I +DE QDTS +  E++                P  +   GD  QSIY     + 
Sbjct: 14  SKYPFIFVDEYQDTSPLVIEIL-------LESLQKVVEPSIVGFFGDSMQSIYDEGIGDI 66

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           +  ++  R             + IE   + R+   ++ + +K+ +     Q   + +   
Sbjct: 67  ENYIKTGR------------VTKIEKKQNRRNPQKVIELANKLRTDGLMQQASDDANAPN 114

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
           + +   + G        + +           +      F++  Q     +    IA    
Sbjct: 115 MENGVIKKGS------VKFLYGNDLKMAYSSEFMKDWNFENSKQTKELRLTHTLIAGE-- 166

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
                     +    +   KD+   V+K++           + N+               
Sbjct: 167 AHFEELYNIYDSDPVLKLKKDLKAYVKKKQIEIEEDKTFDEVLNEI---------EWFYQ 217

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSP-----LFNFSEDDIFKICTQRHETETVYEY 469
                    L  F+    ++  +  +   P      F + +D +     ++         
Sbjct: 218 KGKNTGKSHLEVFLDDPSNEKLYSHVKDLPYSVVSKFYWEKDQLIDDKIEKDGKI----- 272

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI---LGAKKGRQQFISRFGNEV- 525
                +         +  I ++I +    +  D    I   +     +++      +   
Sbjct: 273 ---IRDAKRDALIAHLFRIQDIIALYISSNYRDLLRKIGRKIQRNSDKRELHDELESLRL 329

Query: 526 --IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV----------- 572
                + E ++F    E++         S +E+    +    SA    V           
Sbjct: 330 ISQKSIGEVIDFAN--EKSLCVKSDAFNSFIEK-NEYLYWRVSAVPYSVFQNLYSYIEGR 386

Query: 573 -RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
               T H  KGLE   V ++                      D  G   +       ++I
Sbjct: 387 RPFSTQHKVKGLEYENVLVI---------------------LDSSGWNKYNFDYVLDDSI 425

Query: 632 VSDLIKHLKKSTQEEYNR---LLYVGMTRASDQLIICKHSNTSN 672
              L K  K+S +    R   LLYV  TRA + L++     +S 
Sbjct: 426 YDSLPKGKKESYKRIKRRTEKLLYVCCTRAKENLVLYYPEPSSG 469


>gi|153870876|ref|ZP_02000182.1| Exodeoxyribonuclease V, beta subunit [Beggiatoa sp. PS]
 gi|152072659|gb|EDN69819.1| Exodeoxyribonuclease V, beta subunit [Beggiatoa sp. PS]
          Length = 358

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 52/193 (26%), Gaps = 14/193 (7%)

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR-- 563
           ++L  +   +      G   +  +        +        +  L   L           
Sbjct: 1   MLLEEQVQPRLLTYPDGERRLTNVLHAGEALQQVAVQQKLGMTALCQWLSLQRQQQSAAE 60

Query: 564 ----AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                  ++   V+I+T+H +KGLE P+VF          +    +              
Sbjct: 61  EQQLRLESDEKLVKIVTIHKSKGLEYPIVFCPFVWDGHLYNSKSDQFIFHDEQE------ 114

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                    +  +           + E  RL YV +TRA  +  +   +       +   
Sbjct: 115 --KMTLDLGSEEIEAHRARALDEERAENLRLFYVAVTRAKHRCYLVWGAFKDASTSTLAH 172

Query: 680 TWYDMVYDSFHND 692
             +  V     +D
Sbjct: 173 LLHPGVALEKTDD 185


>gi|77413159|ref|ZP_00789358.1| reticulocyte binding protein [Streptococcus agalactiae 515]
 gi|77160777|gb|EAO71889.1| reticulocyte binding protein [Streptococcus agalactiae 515]
          Length = 1077

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/661 (10%), Positives = 184/661 (27%), Gaps = 111/661 (16%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  +       +A  I   +              + KDILVL+    D          + 
Sbjct: 300 ECINQKDEVEHVARAIRQKLYQG----------YRYKDILVLL---GDVDSYKLQLSKIF 346

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKI 456
             Y I         +  H  +  + +L R    +      + + K+ ++   S+DD+   
Sbjct: 347 EQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEISQDDLDYF 406

Query: 457 CTQ------RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLI--- 507
                    +   +   +++       + +   + + +   +         D    +   
Sbjct: 407 EAYISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLAPLESFVKTKKQDGIKTLNQF 466

Query: 508 --LGAKKGRQQFISRFGNEVIDVLDE--------FLNFTLRNEQNSYSSLQELISELEQY 557
                + G    +SR   ++ +   E        F +   + +         L   L   
Sbjct: 467 MFFLTQVGLSDNLSRLVGQMSENEQEKHQEVWKTFTDILEQFQTIFGQEKLNLDEFLSLL 526

Query: 558 PPTIKRAH----SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
              + +A      A  + V + +    +   +  V+ +      F      K  I     
Sbjct: 527 NSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQFVYALGMTQSHFPKIAQNKSLIS---- 582

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                   I  +   +     + +   K        L           L++      +  
Sbjct: 583 --DIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAA----KQALVLTIPQLLNES 636

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
           +        ++       + + ++     + N   + A          + +++E T ++ 
Sbjct: 637 EDQMSPYLIELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEKQ 696

Query: 734 MDEQKIPKKLFSPI--------------------------KNDINEPYILNPSTIDTKGK 767
                  + L   +                          +   ++P  L+ S + T   
Sbjct: 697 TFWSVAVRYLRRQLTSKGIEIPIITDSLDTVTVSSDVMTRRFPEDDPLKLSSSALTTFYN 756

Query: 768 TNLESLLSDNQTFN-----------RGLIIHKLLQVI--------------FTLPEHKRK 802
              +  L                   G  +H++ +++                + +  ++
Sbjct: 757 NQYKYFLQYVLGLEEQDSIHPDMRHHGTYLHRVFEILMKNQGIESFEEKLNSAINKTNQE 816

Query: 803 NFITSYCTKNAK-LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKD 861
           +   S  +++A+  +  +  +++  +   +L      T  S +   E+ +   I      
Sbjct: 817 DVFKSLYSEDAESRYSLEILEDIARATATILRQDSQMTVESEEERFELMIDNTIK----- 871

Query: 862 IIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL 920
             I+G ID+I   S  ++ + +YK+      +I+        QL  Y   +     +K +
Sbjct: 872 --INGIIDRIDRLSDGSLGVVDYKSSAQKF-DIQKFYNGLSPQLVTYIDAISR---DKEV 925

Query: 921 V 921
            
Sbjct: 926 E 926


>gi|194467114|ref|ZP_03073101.1| DNA helicase [Lactobacillus reuteri 100-23]
 gi|194454150|gb|EDX43047.1| DNA helicase [Lactobacillus reuteri 100-23]
          Length = 775

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 68/225 (30%), Gaps = 21/225 (9%)

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            ++I ++ +DEVQD    Q   ++                     +GD  Q+I++     
Sbjct: 533 QRDIRYVFVDEVQDYDAYQLAYLKY-----------RFPRAKFTLLGDLNQAIFT----- 576

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            +      +          +K  +++L  S+RST  I      +    E  +    +   
Sbjct: 577 HENSRSLLKQLGTMFD--PEKTKVVQLTKSYRSTKQITDFTKHILIDGEAIEAFEREGNK 634

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE-SWTSYFDSLPQESSASILARRIAYT 352
              +++    +     +      Q D               +   + ++ +I A  I   
Sbjct: 635 PHVYQAKNEQEGVATVIDILDKYQKDHDAVAIIGKDLKDSEELYQKLNANNIKATLIRTE 694

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
              ++    +  +   + ++     V+V    D        R L 
Sbjct: 695 NQRLVKGPIVVPSYLAKGLEFD--AVIVWNANDQQYHGNDERQLL 737


>gi|315221763|ref|ZP_07863677.1| ATP-dependent nuclease subunit B [Streptococcus anginosus F0211]
 gi|315189149|gb|EFU22850.1| ATP-dependent nuclease subunit B [Streptococcus anginosus F0211]
          Length = 1092

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 73/661 (11%), Positives = 190/661 (28%), Gaps = 110/661 (16%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A +I   +              + KDI VL+    D        + + + Y+I    
Sbjct: 310 EYVAKSIRQRVHDG----------ARYKDIRVLL---GDVEAYRLQLKTIFDQYQIPFYL 356

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                +  H  ++ + +L R           + ++K+ L+     +   +  Q      V
Sbjct: 357 GRSESMAHHPLVQFIESLVRLKRYNFRTEDLLNLVKTGLYGRLTQEELDLFEQYIRFADV 416

Query: 467 YEYIQKFANCGISKFQHV-IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
               +   +   ++ Q   + +I++L           F +    A    Q+F        
Sbjct: 417 KGISKFSKDFTHNQHQKFDLIHINQLRKKIVTPLLEFFKSRSQTATGLLQKFHHFLTEIA 476

Query: 526 --------------------IDVLDEFLNFTLRNEQNSYSSLQELISELEQYP----PTI 561
                                +V   F +   +      ++  +L   L         + 
Sbjct: 477 FSQNFASLVDFTNPQDQERQEEVWKAFCHVLEQFASVFSANKVKLDDFLTLVQSGMLLSN 536

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            R   A  + V + +    + L SP V+ V      F      K  +           + 
Sbjct: 537 YRTIPATVDVVTVQSYDLIEPLSSPFVYAVGLTQDYFPKIAQNKSLLSDED------RLR 590

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           + ++   ++ +    +   +  +     LL        ++L++      +  + +     
Sbjct: 591 LNEATDEHSELLIAAQENLQKNRFVALSLLNAAT----ERLVLSTPQIVNEIENNISPYL 646

Query: 682 YDMVYDSFH-NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
            ++         E  +    ++ I     +       +  +   ER  T K+      + 
Sbjct: 647 LELHERPIELPIEVKRPQATSDDIGTYRALLARVIELNQGDIDRERSLTEKEQTFWSVVV 706

Query: 741 KKLFSPIKND--------------------------INEPYILNPSTIDTKGKTN----- 769
           + L   ++++                           ++ + L+ S +    +       
Sbjct: 707 RVLRKKLESEGISIPNVTSSLETETLSTQTLQVLYLPHQAFQLSTSALTEFYRNQYAYFL 766

Query: 770 ------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                  E +       + G  +H++ + +  + E   ++F         +     E++ 
Sbjct: 767 KYVLALQEEMTIHPDARSHGNFLHRVFEKV--MQEQSSESFDHRLEKAIQEASQEAEFEA 824

Query: 824 LLLS-ITRLLENPMM-------TTAMSCDSYSE-VSVSGKINCPKKDII---------IS 865
           L       L  + ++          +  +   E +         + +++         I 
Sbjct: 825 LYTENAEALFAHEVLLDTARATGRVLERNDLVETIQEEAVFGQEETNVLTLSDGRNLQIR 884

Query: 866 GRIDQI--SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD-SYPNKSLVC 922
           G++D+I    S  ++ I +YK+      + +       +QL  Y   LK   + N  +  
Sbjct: 885 GKVDRIDRLRSDGSLGIVDYKSSDTNF-DFQKFFNGLNSQLPTYLMALKQEKWANDEVQT 943

Query: 923 L 923
            
Sbjct: 944 F 944


>gi|167815130|ref|ZP_02446810.1| putative exodeoxyribonuclease V beta chain [Burkholderia
           pseudomallei 91]
          Length = 236

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 43/175 (24%), Gaps = 40/175 (22%)

Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--- 835
               G  +H+LL++                  +          + L   +TRL+ +    
Sbjct: 1   GAAAGECLHRLLELSNFADASTWPPAALRALHERPVEAELALAERLPAMMTRLVADLAAT 60

Query: 836 ------MMTTAMSCDSYSEVSVSGKINCPKKDII----------------------ISGR 867
                  +         +E+           + +                      + G 
Sbjct: 61  ELVPGMRLAALDPARRLTEMEFLFPAPALDFNALRRLLAAHGYPDVALEAGTLAGFVKGF 120

Query: 868 IDQISISQQNIFIFEYKTHHHVPQ---------EIEHIPYTHIAQLSIYEKILKD 913
           ID I       +I ++K++H             +     + +  Q  +Y   L  
Sbjct: 121 IDMIVEHDGRFWIVDWKSNHLGTTPEAYGERALDAAMAHHAYHLQALLYMVALHR 175


>gi|315223786|ref|ZP_07865635.1| conserved hypothetical protein [Capnocytophaga ochracea F0287]
 gi|314946232|gb|EFS98232.1| conserved hypothetical protein [Capnocytophaga ochracea F0287]
          Length = 909

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/460 (12%), Positives = 119/460 (25%), Gaps = 81/460 (17%)

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVL---------DEFLNFTLRNEQ-----NSYSSLQ 548
             TLI  A        ++   E    L          +  N   + ++     +S  +L 
Sbjct: 419 IITLIDNAITLIYSLKAQIDPESNTHLLTQEYAYRFFQLFNQLKQLQEQYGYIDSVKTLY 478

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
                L+    +           +++M V  ++ L+   V +      V          I
Sbjct: 479 HF--YLDVLQKSSLNFRGEPLEGLQVMGVLESRSLDFERVIITSVNEGVLPLGKSDSSLI 536

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
              +  +  +P +                         Y+   Y  + RA    +     
Sbjct: 537 PYDVKYELELPTYK-------------------ERDAVYSYNFYRILQRAKQVHLFYDTE 577

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
             S + K   R    ++ +     + V +IK                       PL  ++
Sbjct: 578 MNSLKSKEKSRFILQLLAEKISTHKVVHQIKAPEVYPAVL-------------RPLNIKK 624

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
           T   +   + + +K  SP          L             + +    +    G I+H 
Sbjct: 625 TTSVIDALKALAEKGISPSALTTYIRNPLTFYEQQVLQVYEEKEVEETVEVRTFGNIVHG 684

Query: 789 LLQVI--FTLPEHKRKN-----------FITSYCTKNAKLWP-----AKEYKNLLLSITR 830
            L+ +    L E   +             I     +  +             N++    R
Sbjct: 685 TLEDLYTPFLNEILTEEHIKKMQPLVLPTIEKCFEEEYRSTDFRTGKNWLIFNVIEKYVR 744

Query: 831 LLENPMMTTAMSCDS----YSEVSVSGKINCPKKDIIIS--GRIDQISISQQNIFIFEYK 884
                 +    S       Y E  +           +++  G ID++      + I +YK
Sbjct: 745 SFLTLELNEIKSGTEIIPLYLEQKIKIPFQASHLPFLVNFKGIIDRVDRRNGVLHIIDYK 804

Query: 885 THHHVPQE---------IEHIPYTHIAQLSIYEKILKDSY 915
           T      +         I  I Y    QL  Y  ++   +
Sbjct: 805 TGIVEETDVRIKDWENLITDIKYGKAFQLLTYTYMITQHF 844


>gi|225010265|ref|ZP_03700737.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C]
 gi|225005744|gb|EEG43694.1| conserved hypothetical protein [Flavobacteria bacterium MS024-3C]
          Length = 910

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/495 (10%), Positives = 131/495 (26%), Gaps = 89/495 (17%)

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
           +++         +S+FQ +++ +++     +                G    ++ F    
Sbjct: 415 LFKDKANVPATFVSRFQELLRVLNDFSEKNKQPQISSEVNYFSEIFDGLSAQLTTFPF-- 472

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
           ID L                        LE                +++M +  ++ L+ 
Sbjct: 473 IDNLSGLKKI-----------------YLETLSKKRLSFSGDALEGLQLMGMLESRNLDF 515

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             V +      +         +I  SL    G+P +      ++ + +            
Sbjct: 516 ETVIISHVNEGILPGGKSTNSYIPLSLKKIFGLPSFK----EKDAVYAYH---------- 561

Query: 646 EYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
                 Y  + RA +  ++   +    E     R  + +        +   ++ +     
Sbjct: 562 -----FYRLLQRAKNVYLLYNTATDVLEGGEPSRFVHQLKTQGIAKVQVNDQLAMP---- 612

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
                             +E ++    +    +  K  FSP   +      ++       
Sbjct: 613 ---------ILDAVTPPLIEIKKDQSVIDQLLQKAKSGFSPSALNTYIRNPIDFYKRYVL 663

Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSYCTKNAKLWPAK---- 819
              + E L         G I+H  LQ +    + +   +N    +  +   +        
Sbjct: 664 KLKDPEILEELIAYNTFGTIVHDSLQALYTPAIGQVLTENHFKEFNQQLPHILTHFFEKH 723

Query: 820 -------------EYKNLLLSITRLLE----NPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
                         +  LL  +   LE                  E  ++ +I    + +
Sbjct: 724 HSPTKSLKGKNLIAFSVLLQYLKDFLEYDQECAKKEPIYIESLEKEYQMTLQIPGVSESV 783

Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQE------------IEHIPYTHIAQLSIYEKI 910
           +  G +D++        I ++KT    P +             E      + QL  Y  +
Sbjct: 784 LFIGSLDRVDKRNGVTHIIDFKTGAVKPTDLKLKDWDGLNNSPERAK---VLQLLSYALL 840

Query: 911 LKDSYPNKSLVCLLI 925
              ++ N  +   + 
Sbjct: 841 YSQNHGNTPVKTGIY 855


>gi|209883636|ref|YP_002287493.1| double-strand break repair protein AddB [Oligotropha
           carboxidovorans OM5]
 gi|209871832|gb|ACI91628.1| double-strand break repair protein AddB [Oligotropha
           carboxidovorans OM5]
          Length = 1066

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/380 (12%), Positives = 98/380 (25%), Gaps = 51/380 (13%)

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
           E   Y  L         +   + R    +   +RI  +  A+  +   V L      V+ 
Sbjct: 610 EAADYPDLFA-----TAFANRVVRRPENSDAALRIYGLLEARLTQCDRVILGGLVEGVWP 664

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
                   +   +  + G+ +   +     +  + L+                       
Sbjct: 665 PAPRIDPWLSRPMRHELGLDLPERRIGLTAHDFAQLLGA--------------------- 703

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI-AYEWSTHH 718
            ++II   +          R  + M   +        + +  + +   E + A +  T  
Sbjct: 704 KEVIITHATKVGGAPAVASRFLHRMKAIAGTKAWTEAEKRGADYVRYAEALDAPDSITPV 763

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQ 778
            +  P          M   +I   L  P          L            L+ +     
Sbjct: 764 AQPAPTPPVALRPLQMSVTEIEDWLRDPYTIFAKRILKLT----------LLDPVDLPLT 813

Query: 779 TFNRGLIIHKLL----QVIFTLPEHKRKNFITSYCTKNAKLWPA--KEYKNLLLSITRLL 832
             +RG  IH  L    Q             +     ++     A  +          R+ 
Sbjct: 814 AADRGSAIHNALGDFTQKHSKTLPEDIVAELRFCGEEHFAALMAHPEARALWWPRFLRIA 873

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINC-----PKKDIIISGRIDQISISQQNIF-IFEYKTH 886
           +              E++   +          ++  +S R D+I +     F I +YKT 
Sbjct: 874 DWFAGWELRRRAETVEIAAEQRGEIAIPLGDGREFRLSARADRIELRADRTFAIIDYKTG 933

Query: 887 HHVPQEIEHIPYTHIAQLSI 906
                  + +      QL++
Sbjct: 934 QPPSN--KQVQLGLSPQLTL 951


>gi|310657538|ref|YP_003935259.1| ATP-dependent deoxyribonuclease (subunit b) [Clostridium
           sticklandii DSM 519]
 gi|308824316|emb|CBH20354.1| ATP-dependent deoxyribonuclease (subunit B) [Clostridium
           sticklandii]
          Length = 1118

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 83/724 (11%), Positives = 192/724 (26%), Gaps = 139/724 (19%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +       A   A  + +++              + KDIL++        L       + 
Sbjct: 300 EALDMEKEAEHCALEVLSLVRD---------FGYRFKDILIITP---MPHLYAGPISRVF 347

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF--- 454
              +I    + +  +     I  + +     +           LKS      E       
Sbjct: 348 TRLEIPHFIDVKRDIMSSPLITLIFSYLDMHIKNLRYEDVFSFLKSGFTQLDESQYMPLE 407

Query: 455 ------------KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI-------- 494
                        +   R   E  ++     ++    K +    Y+  L  +        
Sbjct: 408 NFVLKWGIKGRMWLDENRFSEERFFDQYD--SSEYKEKIKTAKDYLVSLFELNKKSFKGS 465

Query: 495 ----AQFCSPHDFFTLILGAKKGRQQFISRFGNE-----VIDV------LDEFLNFTLRN 539
               +   +   F T I  A+   + F++R   E       +       + + L+  +  
Sbjct: 466 GTGPSYAKALFGFLTEI-KAQDQLEIFVNRLREENAFDYANENAQIWNIILDTLDQLVEI 524

Query: 540 EQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 SL+E  + L E              ++V + T+  ++      +F +       
Sbjct: 525 MGEKPMSLEEFRNILYEGIKQHEIGIIPPALDQVIVATLDRSRSTAIKALFFMGLNDTYV 584

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
            H                  PI +   K +   +   +     +   +    +Y  +++ 
Sbjct: 585 PH-------------VGKDSPILLDDDKKKLKDLGVNLPSELDNAMSDETLSIYSALSKP 631

Query: 659 SDQLIICKHSNTSNE-KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           +D+L +    +   + K     T  + +   F N      +  T+  +      Y +   
Sbjct: 632 NDKLFLSYSLSGGEDNKALRPSTIINRLKTLFPNLHERSSLSDTSVFSYISTPDYSFGKL 691

Query: 718 HPENTPLEREETIKQ----LMDEQKIPKKLFSP---------------------IKNDIN 752
             E   L  E+ + +    L           +                       K    
Sbjct: 692 AGELRDLVEEKHLDKDWLSLYSWYIDNDGWEARRQRLLDNLFYKNQQEYITPTQAKQIYE 751

Query: 753 EPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLP---- 797
            P+  + S ++   K                 + +      G I H  ++    L     
Sbjct: 752 APFKASVSRLERFAKCPFDHFVQYGLKPEPRKVHEIGPPELGTIFHSAIEDFAKLANNKA 811

Query: 798 -----------EHKRKNFITSYCTKNAKLWPAKEYKNLL--LSITRLLENPMMTTA--MS 842
                      + +    I +  + + K+      +N      I ++      T    MS
Sbjct: 812 SLPLLLDKKTCDEQIDKLIENCVSDHIKILMDNSKRNAYMMKKIKKVGRRAAWTMVNQMS 871

Query: 843 CDSYSEVSVSGKIN------CPKKDIIISGRIDQISISQQ---NIF-IFEYKTHHHVPQE 892
              +       K+            I ++G+ID++ I  +       I +YK+       
Sbjct: 872 KGRFEPYDFEMKLPPIVLDLGEYGTIELTGQIDRVDILDENEKTYVKIIDYKS-REKKFS 930

Query: 893 IEHIPYTHIAQLSIYEK-ILKDSYPNKSLVC----LLIYVSEPKVFIIPQNKLNKAFAEI 947
           +         QL +Y + +L+     K           +    K+       + +   +I
Sbjct: 931 LSDAYNGLDIQLIVYLESVLEHLPSLKKTKAYPAGAFYFPIVDKLIESDLTDVEEIEKQI 990

Query: 948 STKI 951
           + K+
Sbjct: 991 AGKL 994


>gi|149173178|ref|ZP_01851809.1| Superfamily I DNA and RNA helicase [Planctomyces maris DSM 8797]
 gi|148847984|gb|EDL62316.1| Superfamily I DNA and RNA helicase [Planctomyces maris DSM 8797]
          Length = 688

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 74/276 (26%), Gaps = 35/276 (12%)

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHI 180
           + +      A  +   ++   KK  +L FE  I          +    +         H+
Sbjct: 403 RISRKQRKAAWPVFRAFQRGLKKRNLLTFEGAIH---------EARLAVLQGNFARYAHV 453

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLRE 240
           L+DEVQD SL    +IR+++           +P  L  VGD  Q IY             
Sbjct: 454 LVDEVQDFSLEALRLIRAIS------PIDEGTPDPLCTVGDGHQRIY------------- 494

Query: 241 KRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSS 300
           +            +     L +++R++  I      +    E         TT   H   
Sbjct: 495 RTKIPMSRAGIDIRGRSRRLKINYRTSEQIRKFAQGILKGLEIDDLDGGIVTTVGDHSVF 554

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS-NMIGT 359
           +  +            + +        +W     +    ++  I        I   +   
Sbjct: 555 KGPEPM------VEKCKTEKAEAEAIVAWVQMLMADYGLATHEICVTPRKPKIVTALSSA 608

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                  K R          +R      +     R 
Sbjct: 609 GIATFELKPREEDPGSDEAGIRVGTMKRIKGLEFRA 644


>gi|9630454|ref|NP_046887.1| gp69 [Mycobacterium phage D29]
 gi|6136238|sp|O64262|VG69_BPMD2 RecName: Full=Gene 69 protein; AltName: Full=Gp69
 gi|3172318|gb|AAC18511.1| gp69 [Mycobacterium phage D29]
          Length = 269

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/170 (9%), Positives = 45/170 (26%), Gaps = 43/170 (25%)

Query: 783 GLIIHKLLQVIF-------TLPEHKRKNFITSYCTKNAKLWPAK---------------- 819
           G   H + + +         L   + K+    +   +   +  +                
Sbjct: 43  GTAFHAVAEAVEVWESYGMPLTLDEAKDMFRWHYANDVGAFTEETPNFEWWTWSGPYNGQ 102

Query: 820 -EYKNL----LLSITRLLENPM--MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS 872
            + +      L  + +                  +  ++          I++ G ID + 
Sbjct: 103 RDIERRYTVGLEQVEKFFAWRGTPGQEIWVTPDGTP-AIELYFEIELDGILVRGYIDAVV 161

Query: 873 ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVC 922
           +    + + +YKT +    +          QL +Y   +  +Y    +  
Sbjct: 162 VVDGELRVRDYKTGNQPGDD---------FQLGVYALAVAMTYG---VEA 199


>gi|254244584|ref|ZP_04937906.1| hypothetical protein PA2G_05450 [Pseudomonas aeruginosa 2192]
 gi|126197962|gb|EAZ62025.1| hypothetical protein PA2G_05450 [Pseudomonas aeruginosa 2192]
          Length = 493

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 30/180 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q  + +L+DE QD + +  ++              H     +  VGD  Q +Y F GA
Sbjct: 187 LSQRFDCMLLDEGQDINPVIADI-------------AHWQRIRMAIVGDPHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E               ++         L  S+R    I  V + + S     + L     
Sbjct: 234 E-----------DALNSDWMVGAEEHYLTQSWRFGPAIAHVANIILSYKGETRKLQGLGP 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES------WTSYFDSLPQESSASILA 346
            T+  +S          +   V+   ++     + +      W    DS        + A
Sbjct: 283 QTLVKKSLPADLPHRTFIHRTVIGVIENALQRVRNNPAPKFYWVGGIDSYSLRDLEDLYA 342


>gi|215483863|ref|YP_002326088.1| UvrD/REP helicase family protein [Acinetobacter baumannii
           AB307-0294]
 gi|213986919|gb|ACJ57218.1| UvrD/REP helicase family protein [Acinetobacter baumannii
           AB307-0294]
          Length = 697

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/531 (12%), Positives = 155/531 (29%), Gaps = 78/531 (14%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
                + LI  +  L +K  + + I   I  + ++I IDE QDT  +   ++  L +   
Sbjct: 196 GTFSHDSLIKVSYFLAEKYSLFSKI---ISDKFDYIFIDEYQDTDKV---LVDLLLKKI- 248

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                 +   T+   GD  Q IY   G+    +     I              I    ++
Sbjct: 249 ----AINKKTTIGFFGDSMQGIYDGIGSLDDYIRDFNLIY-------------IPKDDNY 291

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW-EQVVSQHDSQCN 323
           R +  ++  ++ +    +  Q +       ++   S   + G+V+++  ++     +   
Sbjct: 292 RCSQQVIDFLN-IIRNDDIKQKV------ALKKGESLDSRQGSVKIYINKIQKVKSNGHQ 344

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
             +E + +  +   ++         +   I  +            ++ +  +   L    
Sbjct: 345 EDKEKYIALINDAIKKVKEKS--DILNLNILQLTNKSIASELKFSKLFKVFEDRYL---N 399

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            +   I    + ++    +     D   L  +    DL+   +    +   L     + S
Sbjct: 400 LEQTQIESNLKKIQVKDVV-----DLIFLYKNNRHNDLILKLKKNNLKIKKLDDKINIIS 454

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            L    ++D+          E +    +        +                       
Sbjct: 455 RLSYICDNDL-------GLNEALDYCYENKLLIKSPQRIDFESQSKRHFEQCDSDPVFKD 507

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
              +L          ++          ++ +F     +  +S      + L         
Sbjct: 508 LKTLLERDNLNTYNRAKQHCTYDIDQYDYDDFMSSYRKIKFSDSLLSNNLLLSEVLNYFN 567

Query: 564 AHSANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
               N N   + +T+H  KG     VF+V      +S+   + ++               
Sbjct: 568 YIEENSNSNEKYLTMHKTKGTGIENVFVV-LEEFFWSNYSFRSIY--------------- 611

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                 ++  S+     K         L YV  +R    L+I  +  T++E
Sbjct: 612 ------DSSYSNFKVKEKSEK------LFYVACSRTIKNLMILINYETNDE 650


>gi|319404940|emb|CBI78542.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 1040

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/403 (11%), Positives = 107/403 (26%), Gaps = 49/403 (12%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-ELEQYPPTIKRAHSANHNEVRIM 575
               + NE    L  FL   + ++      L E  +                 H  + I 
Sbjct: 567 LAHLYQNEAGKALVTFLRELVSDQSGLKFCLHEWPALFSALMATRSVSPSPGGHPRLFIW 626

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               ++      V +       +  K      +   +     +     +     +     
Sbjct: 627 GTLESRLQTVNTVVIGSLNEGSWPIKTHNDAFLSRPMKITLTLEPPEQRIGLSAHDFQWA 686

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           +   K            V M+RA+           ++      R    +         + 
Sbjct: 687 MGMDK------------VIMSRATRV---------NHTPSVPSRWLQRLETVVGKQVWKQ 725

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENT-PLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
              +    ++  + +    S    E   P+   +   +     +I      P      + 
Sbjct: 726 ICTRGELLLHWAKMLDNTNSITPAERPCPVPPLDIRPRHFSITEIETLRHDPYAIYAKKI 785

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
             L P          L++L+ D  +  RG + H +L    T  ++     +        +
Sbjct: 786 LRLKP----------LKALIHDPCSAERGTLYHTILAAFCTQIKNHNATDMLDILLTIGR 835

Query: 815 LWPAKEYKNLLLSITRLL--ENPMMTTAM--------SCDSYSEVSVSGKINCPKKDIII 864
                +  NL   I  +           +            Y+EV ++      +  + +
Sbjct: 836 K--EFDKLNLPPDIEAVWWPNFENFAPFLIQWEKSLGPRKRYAEV-IAQNTLIGETGVTL 892

Query: 865 SGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           SGR D++ I     + I ++KT          +      QL++
Sbjct: 893 SGRADRLDILPDKTVEIIDFKTSIPPSAT--QVINLFSPQLAL 933


>gi|302673710|ref|XP_003026541.1| hypothetical protein SCHCODRAFT_114395 [Schizophyllum commune H4-8]
 gi|300100224|gb|EFI91638.1| hypothetical protein SCHCODRAFT_114395 [Schizophyllum commune H4-8]
          Length = 3975

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 91/299 (30%), Gaps = 23/299 (7%)

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            +   Y++ K +    D  D   N   +L+ +  +         +I+++ +DEVQD  LI 
Sbjct: 3138 IFVQYDKEKARRGDYDAADRTFNVLRILRGQGTAG-------GKIDYLYVDEVQDNLLID 3190

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN-- 250
              V+R +T               LF  GD  Q+I          +       +++  +  
Sbjct: 3191 ARVLRYITRF----------ANGLFWAGDTAQTISVGSAFRFDDLKAYLHRLEEKHNSVI 3240

Query: 251  AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
              +     +L  ++RS A I+     V  +       S D             +   +  
Sbjct: 3241 NRRPPPSFQLTTNYRSHAGIVDCAQTVIELITKYWPDSIDQLAREE-GEVAGVKPVFLTG 3299

Query: 311  WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRV 370
            W      ++             F +          AR+    +   +G   +     +  
Sbjct: 3300 WSSDTLCYEQFLFTTSSGNAIEFGAKQCIIVRHEEARQ---RLRARVGNIGLIMTLYQSK 3356

Query: 371  IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
                D +VL    +D+ +     R + N        +      +      + +  +F+ 
Sbjct: 3357 GLEFDDVVLYDFFQDSLVTASQWRMVLNHMSPDYHPHIPAPRFEETLHAGVCSELKFLY 3415



 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/442 (12%), Positives = 135/442 (30%), Gaps = 45/442 (10%)

Query: 88   EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
            + ++++  L ++    +  +  +  R  +    +       L   +   Y + K      
Sbjct: 681  KGSEEASLLPDRCLD-RQTYEGLSVRRQSTFANRRN-----LIYDIFMQYTKEKALRNDY 734

Query: 148  DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            D  D   N   +L++  +         ++I+++ +DEVQD       +I +L   +  G 
Sbjct: 735  DAADRTYNILRILQEYGLQG-------KKIDYLYVDEVQD-----NLLIDALVLRYITG- 781

Query: 208  NTHSSPRTLFAVGDEKQSIY---SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                +P  LF  GD  Q+I    +F   + K  L      Q R T  G++    +L  ++
Sbjct: 782  ----NPNGLFWAGDTAQTISVGSAFRFNDLKAYLHRLEEKQIRIT-QGREPRAFQLTTNY 836

Query: 265  RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            RS   I+     + S+         DS   +     ++G    V L          +   
Sbjct: 837  RSHGGIVDCAHSIISLIM---EYWPDSIDMLARERGQVGGPKPVFLTGWSNDNVRYEQFL 893

Query: 325  QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILV---LVR 381
               S  +  +   ++                +     I +  + + ++  D+L+      
Sbjct: 894  FTSSTGNAIEFGAKQCILVRHEEARQRLRKEVGDIGLIMTLYESKGLEFDDVLLFNFFHD 953

Query: 382  KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI-LSQEDDLSFVCM 440
               +T     +   + +++        R  +      ++L A  +F+ ++       V +
Sbjct: 954  SSVETSQWRVVLNAMDSEH--------RQEVPAPRFDENLHAGLKFLYVAITRGRKNVWI 1005

Query: 441  LKSPLFNFSEDDIFKICTQRHE---TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
            + +         +     Q             +    +        + K    +     +
Sbjct: 1006 VDTSDRGEPMRMLLTAREQVENCSPENAPRLAVSSSPDEWKETAVELFKLERYMQAKMCY 1065

Query: 498  CSPHDFFTLILGAKKGRQQFIS 519
                      +      +Q  +
Sbjct: 1066 ERAGSLVEAAISHAHYLRQQAA 1087


>gi|228989085|ref|ZP_04149111.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228770656|gb|EEM19195.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 324

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 107/316 (33%), Gaps = 38/316 (12%)

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ 431
             +D  +L R    +     L   L       V    + +  ++  +K ++ + +  +  
Sbjct: 16  NYRDFSILYRTHAVSR---SLIEQLVIKEIPFVQYKTKDLFYNNSNVKPIINVLKLAIRP 72

Query: 432 EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV---------YEYIQKFANCGISKFQ 482
           + D   +  +  P+    +D +       +  + +         Y       +    +  
Sbjct: 73  KTDFESLKGVC-PMLYIGKDKVMDSIINAYAIDDLEGQTKPLISYLLKCHLTHNQNKRAM 131

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGR----QQFISRFGNEVIDVLDEFLNFTLR 538
            + K I E   ++   +        L  ++      ++ ++     +++ LDE       
Sbjct: 132 LLYKTIKECRGMSAIEAIQCIRYGYLQYEQYLLDNKRKNMTTHKEMLLEELDELETSAKS 191

Query: 539 NEQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
              ++     + I +LE     +K      N N + +MT+H +KGLE   V+++      
Sbjct: 192 F--STIKEFIDFIEKLETQYEKMKELQKEQNVNAISLMTIHGSKGLEFKHVYIIGASEGT 249

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
             HK   ++     ++                   +   K + +   EE  RLLYV +TR
Sbjct: 250 LPHKSSLEITDDRVIDG------------------NKDKKEILQELLEEERRLLYVAVTR 291

Query: 658 ASDQLIICKHSNTSNE 673
           A D L I    +   +
Sbjct: 292 AKDYLHIYSPKSMRGK 307


>gi|313836712|gb|EFS74426.1| UvrD/REP helicase [Propionibacterium acnes HL037PA2]
 gi|314929881|gb|EFS93712.1| UvrD/REP helicase [Propionibacterium acnes HL044PA1]
 gi|314972309|gb|EFT16406.1| UvrD/REP helicase [Propionibacterium acnes HL037PA3]
          Length = 752

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/388 (14%), Positives = 108/388 (27%), Gaps = 38/388 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   ++ I+  VS  +      + + A+ +  A +T        LL    L Q 
Sbjct: 342 ASALGQPGVYINGIDALVSAVIRDAGADVAEAAKEVLGAPRTDLTGRTSPLLWRDVLDQA 401

Query: 78  FT--PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +  P++    + +  +   +   L        K        + F+           L  
Sbjct: 402 RSEVPERLAHHRLLETEYEQII--LPNLITTQEKYLRARRPGRGFRLNRRDRDAVWELVN 459

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  +   ++ F +        L +    A          +H+L+DE QD +   W +
Sbjct: 460 KYRDDSRIGGMISFAEAAAIAAQYLTRHSAVA----------DHVLVDEGQDLAPAHWRL 509

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 510 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 547

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL    +V            D      +RS+R G    V +     
Sbjct: 548 RSRRLTLNYRTTAQILHWSTRVLEGGNYVDLDGADDDKLSGYRSARRGPD--VTVHPCGT 605

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
              +     +     +        +       +    +  +              I    
Sbjct: 606 ITEEFDVLAKIVGQWAKGRQPETTAVLVRDRSQRERVVDALHERGVQTRAVDHGSIPPGA 665

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKIS 403
            +V+   R      + +  F  +   I 
Sbjct: 666 PVVMTMHRAKGIEFSKVYLFGVSSRSIP 693


>gi|257054995|ref|YP_003132827.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
 gi|256584867|gb|ACU96000.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
          Length = 705

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 19/187 (10%)

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +     +  R +   E +HI++DE QD S +QW ++                  +   VG
Sbjct: 475 EHSPDGSRRRPEHYDEYSHIVVDEAQDLSPMQWRMV-----------GRRGKYASWTVVG 523

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  QS       +P+   + +      A     K     L  ++R++A+I  +  +V + 
Sbjct: 524 DPVQS----SWPDPEEAAKARDQ----AFGPHAKRRRYALRTNYRNSAEIFELASRVVAD 575

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                 L     TT      R  +   ++   Q  ++                D +P+  
Sbjct: 576 HARPDDLPRAVRTTGVRPQIRRVEPDALENAAQTAAKELLDAVEGTVGVICAMDRVPEVE 635

Query: 341 SASILAR 347
                A 
Sbjct: 636 RWFSDAE 642


>gi|197103667|ref|YP_002129044.1| hypothetical protein PHZ_c0201 [Phenylobacterium zucineum HLK1]
 gi|196477087|gb|ACG76615.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 1001

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/369 (11%), Positives = 89/369 (24%), Gaps = 45/369 (12%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                   RA  A H  +RI+    A+ + +  + +      V+         +   +  
Sbjct: 570 RLMEGESVRAGGATHPRLRILGAIEARLVRADRLVVAGLEEGVWPRGAPLDPFLSRPMRR 629

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G+P    +     +  +      +        R                        +
Sbjct: 630 TLGLPPPERRVGLSAHDFAQAACAAEVILLHSERR----------------------EGQ 667

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
            + +  W   +             +           A +         P    E   + +
Sbjct: 668 PAVKSRWLWRLETLARGAAVEIPGRPEALAWARALDAPDDYRPARRPAPCPPVEARPREL 727

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV-- 792
              ++      P      +   L P          LE      +   RG  IH   +   
Sbjct: 728 FVTRVETLTRDPYAVWARDILNLRP----------LERPDEPVEARARGTAIHAAFERFA 777

Query: 793 ------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY 846
                 +        +        K      A   ++ L          +     +    
Sbjct: 778 LDHPRDLPPDAAAIFEAMYVEELEKAGMPREALARESALAREAAAWVAELEARRRADGRA 837

Query: 847 SEVSVSGKINCPKKD--IIISGRIDQISISQQNI-FIFEYKTHHHVPQEIEHIPYTHIAQ 903
             V  +G++        +++  + D+I    Q    I +YKT     Q++  +      Q
Sbjct: 838 IHVEKTGRLAIRVDGHEVVLGAKADRIEADPQGYGHILDYKTGRAPSQKV--VDAGFSPQ 895

Query: 904 LSIYEKILK 912
           L++   IL 
Sbjct: 896 LTLTAAILA 904


>gi|145509268|ref|XP_001440578.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407795|emb|CAK73181.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1763

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 79/243 (32%), Gaps = 39/243 (16%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL-IDEVQDTSLIQWEV 195
           YE+ K +    D  DL+           +     Y+      H L +DEVQD +     +
Sbjct: 299 YEKWKSQQGYFDQMDLV--------NYIIQKIKIYEYQGVNMHFLFVDEVQDFTQATLYL 350

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
              L E            + +   GD  Q+I    G   +    +++I   +       F
Sbjct: 351 FNLLAE------------QRIMLSGDTAQNIVKGVG--FRFQDLKQQIFGMK------DF 390

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L ++FRS  DIL + + V SI E     + D    ++   S         +     
Sbjct: 391 QTYSLTINFRSHNDILQLANNVISIIEILYPKTID---CLKKEQSADSGPKPTII----- 442

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
                  N          D   +      +  +    I +++    + +  + + ++  D
Sbjct: 443 --SSKDINSILYLMQGQDDGRIEFGCYQAVLAKNHKDIPDILKHLIVLNIQECKGLEFDD 500

Query: 376 ILV 378
           +++
Sbjct: 501 VII 503


>gi|162451112|ref|YP_001613479.1| hypothetical protein sce2840 [Sorangium cellulosum 'So ce 56']
 gi|161161694|emb|CAN92999.1| hypothetical protein sce2840 [Sorangium cellulosum 'So ce 56']
          Length = 1045

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/506 (8%), Positives = 117/506 (23%), Gaps = 65/506 (12%)

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           I EL    +           +GA     +       +   +     +        + + +
Sbjct: 478 IEELRAALRGERRSGGALEAMGAMGQGARAARAIREQAEALARAAYDLGCEERPATAAEI 537

Query: 548 QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
              +           R  +     VRI        LE+ VV +    ++ +         
Sbjct: 538 YAELERAAAEQGAGPRGDAGRAGAVRIDVAAGFTALENDVVVVTGLDARAYGGSPGADET 597

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR--LLYVGMTRASDQ---- 661
           ++          +  P   +         +           R  L Y     +       
Sbjct: 598 LLGEALRG---RLPAPSRPATGRERQAAQRAELGWALAGARRVALCYTRGDDSEPNEPHP 654

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           L I   +  ++++                 D  +  +        D            + 
Sbjct: 655 LFIAAAAAGAHQRTEPASRVAPDAAPLGPRDAELIALAGGGRPAADLAERIRIERARADF 714

Query: 722 TPLERE-----------------ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
               R                      +       P +  +    +              
Sbjct: 715 FLDPRAPIDLHTGRVLVDRDPALAAQLRAAIGGAHPDRPIAVTHIERAVGCAFAAFARRV 774

Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHKRKNFITSY----------CT 810
                 E L        RG +IH+ L    + +  L   +      +            +
Sbjct: 775 LHVRRAEDLAESADARERGTLIHRALQASFEALRELGPERDPAEQLAAARAAAEAALGVS 834

Query: 811 KNAKLWPAKEYKNLLLSITRLL----------ENPMMTTAMSCDSY------SEVSVSG- 853
                   +  +  +  +  ++           +P +   ++   +          +   
Sbjct: 835 APMAPLRREAVEKAIADVMEVVARTLDGDGEDASPELRFFLAERRFGAGEPPPWQPLELP 894

Query: 854 KINCPKKD--IIISGRIDQISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
            ++  +    + + G+ID++  S       + +YKT      +          QL +Y  
Sbjct: 895 PLSDEEGGPSLWVDGQIDRLDRSTDQRVVRVVDYKTGKLPDAKERRRA----LQLPLYSA 950

Query: 910 ILKDSYPNKSLVCLLIYVSEPKVFII 935
           I   +   + +  + I V +  +  +
Sbjct: 951 IAARALGAEEVRAVYIGVRQRGLIEL 976


>gi|29347300|ref|NP_810803.1| hypothetical protein BT_1890 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339199|gb|AAO76997.1| ATP-dependent DNA helicase replicase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 686

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 30/172 (17%)

Query: 140 AKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
             +KN +L++ D+       L           +    I H+LIDE+QD S IQ++VI+ L
Sbjct: 435 KMRKNRMLEYADMAPLAYLHLALDG------NRTQTHIRHLLIDEMQDYSPIQYKVIQKL 488

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                        P     +GD  QS+  +  +    + +                 +++
Sbjct: 489 Y------------PCRKTILGDASQSVNPYGSSTAAMIQKA-----------FTTGEVMK 525

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI-RHRSSRIGQVGTVQL 310
           L  S+RST +I ++  K+ +  E    +       I   +++     G V L
Sbjct: 526 LCKSYRSTFEITSLAQKIQANNELEPIMRHGEQPEIFPFKNAEEETTGIVNL 577


>gi|319902332|ref|YP_004162060.1| hypothetical protein Bache_2509 [Bacteroides helcogenes P 36-108]
 gi|319417363|gb|ADV44474.1| hypothetical protein Bache_2509 [Bacteroides helcogenes P 36-108]
          Length = 989

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/443 (12%), Positives = 119/443 (26%), Gaps = 73/443 (16%)

Query: 530 DEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
           +  LN     E N   +                  H      +++M V   + L+   + 
Sbjct: 509 NRLLNLIETEELNGLRTDTLKRLLGRLLTSANIPFHGEPAIGMQVMGVLETRNLDFRNLI 568

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           ++            +   I  +L    G+     ++              +   + E   
Sbjct: 569 ILSLNEGQLPKAGGEASFIPYNLRRAFGMTTIEHKNAV------YAYYFYRLVQRAENIT 622

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
           LLY   +                +  +       M+     +   +    L    +    
Sbjct: 623 LLYSTAS----------------DGMNRGEMSRFMLQFLIESPHDISLRYLEAGQSPQST 666

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
                          E  E + +  D ++  K LFSP   +      L            
Sbjct: 667 REIRIDKTP------EILERMYRTYDIRRNSKALFSPSALNAYLDCRLKFYYRYIAQLKA 720

Query: 770 LESLLSDNQTFNRGLIIH----KLLQVIFTLPEHKRKNFITSYCTKNAKLWP-------- 817
              + ++  +   G I H       + + T  +  RK  + +    + +L          
Sbjct: 721 PNEVSAEIDSALFGTIFHYSAQLAYEALTTHGKEIRKEALEALLKNDTRLQSYVDNAFKK 780

Query: 818 --------------------AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC 857
                               +K   + L  + R   +              V  + + + 
Sbjct: 781 EFFHVPSTEQPEYNGTQLIHSKVIASYLRQLLR--NDLQYAPFNMEAMEKPVDETIETDT 838

Query: 858 PKKDIIIS--GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIY 907
           P   +++   G ID++      + I +YKT      P+ IE +         +I Q  +Y
Sbjct: 839 PLGKLLLKIGGTIDRMDSKGDTLRIVDYKTGGVPKIPENIEQLFTPSTSRPNYIFQTFLY 898

Query: 908 EKILKDSYPNKSLVCLLIYVSEP 930
             I+    P K +   L+Y+ + 
Sbjct: 899 AAIMCRKQPLK-VAPALLYIHKA 920


>gi|313888221|ref|ZP_07821895.1| conserved hypothetical protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845911|gb|EFR33298.1| conserved hypothetical protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 870

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/437 (11%), Positives = 114/437 (26%), Gaps = 52/437 (11%)

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
              SP       L           +   E +D +   +       ++    L + +  L+
Sbjct: 396 YLESPRGKIENALERDPESPLIRDQRFLEELDDVFIKMEALREFYKS--IDLYDFVLILK 453

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
           +Y   I+     N   + I +  +    +   + L+                        
Sbjct: 454 KYMEKIRLDEVQNLEGIEISSQASNYYRDFKNLILIGYDET------------------- 494

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                        +   + + K   +   EE   L  V      D   +      + +  
Sbjct: 495 ----------YQDDKRSNFIYKQESQEVMEE---LGLVKDNFNRDYAYLIYDILVAEKLL 541

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                         ++      +++       E      +    EN+ L     + ++  
Sbjct: 542 ILCSDRDKGFSKLLNSLILDLDLEVEEVKKIYETDKLYRTREVKENSYLIDAGQLGEINK 601

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT 795
           +        +      + P       +   GK  LE    D    + G   HK+L+  F 
Sbjct: 602 KISERPYSVTDFDILKDCPRRFLFERVYRIGK--LEKDYEDRFYIDAGEKYHKVLETYFK 659

Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM-MTTAMSCDS-------YS 847
             E   ++ +     +   L    +          +L +   +   +  D        Y 
Sbjct: 660 QEEGFDEDKLLKIILEVENLGDFDDLSFFDK--LSVLNSQKILGDYIKKDLEGQAKYGYK 717

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK-THHHVPQEIEHIPYTHIAQLSI 906
                         + I GRID+I +      + +YK +     +EI+ +      Q+ +
Sbjct: 718 PAYFEEGFETEINGLRIRGRIDRIDVLGDKEILMDYKRSGVKKKKEIDELKS---FQMPL 774

Query: 907 YEKILKDSYPNKSLVCL 923
           Y    K     K +   
Sbjct: 775 YAIARKKL--GKKISMA 789


>gi|253576950|ref|ZP_04854274.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843681|gb|EES71705.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 226

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 53/151 (35%), Gaps = 25/151 (16%)

Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
           +    G  +HK ++ +      + +  I +    +    P   Y+ +   + R    P +
Sbjct: 32  KPLALGKAVHKAIE-LKINGVSEHEAIIEAIIESDFH--PEVTYEEIASLVQR---APEV 85

Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                    +EV     +      I + G ID +   ++  +  ++K++    +  +   
Sbjct: 86  R------GQTEVHFVLPL---GDGIQLQGYIDLL--EEERFW--DWKSNWRPYRANDT-- 130

Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
                QL++Y   +      + ++  L ++ 
Sbjct: 131 ----RQLALYAWAIMKMRGLRQVMGTLYFLR 157


>gi|323440878|gb|EGA98586.1| ATP-dependent nuclease subunit B [Staphylococcus aureus O11]
          Length = 1158

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 198/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I          +    F           +  ++   E  +  L+ +       +Q 
Sbjct: 466  VIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGYHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKRNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         +      +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDLLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 1020


>gi|302560389|ref|ZP_07312731.1| I DNA or RNA helicase [Streptomyces griseoflavus Tu4000]
 gi|302478007|gb|EFL41100.1| I DNA or RNA helicase [Streptomyces griseoflavus Tu4000]
          Length = 774

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/340 (12%), Positives = 97/340 (28%), Gaps = 38/340 (11%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
              P  +   ++     S   G  T  + A  L+ +       E        FL      
Sbjct: 397 LLRPRARKLLLDALWERSGAGGRHTDPELAAELRASFDDDITSE------DDFLAFLDAW 450

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
              +    +     D +   + ++        R     + +   +   +A  L       
Sbjct: 451 WPELTPAAVLDAMADERRLGRWARRILNPGEVRKVARALKRDGRSVHDIA--LLDELGAV 508

Query: 141 K------KKNCVLDFEDLIINTNDLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                  ++   LD  D +    +L+    + +   A    +   E  H+++DE QD + 
Sbjct: 509 LGAPARPRRKRELDPLDQLTGLEELMPVREESQRERAERLAQERVEYAHVIVDEAQDLTP 568

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +QW ++                  T   VGD  QS      ++P    + +         
Sbjct: 569 MQWRMV-----------GRRGRHATWTIVGDPAQS----SWSDPDEAAQARDE-----AL 608

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
             +     EL +++R+ A+I  +  KV ++            +T       + +    + 
Sbjct: 609 GTRPRRRFELTVNYRNPAEIADLASKVLALAMPGAESPRAVRSTGVEPRFAVVEGSQAET 668

Query: 311 WEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
                ++   + +       +             L  R+ 
Sbjct: 669 VRAEAARLLDRVDGTVGVVVAMQRREEARRWLDGLGDRVV 708


>gi|328907739|gb|EGG27503.1| UvrD/Rep helicase [Propionibacterium sp. P08]
          Length = 745

 Score = 64.2 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/388 (14%), Positives = 108/388 (27%), Gaps = 38/388 (9%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
                 P   ++ I+  VS  +      + + A+ +  A +T        LL    L Q 
Sbjct: 335 ASALGQPGVYINGIDALVSAVIRDAGADVAEAAKEVLGAPRTDLTGRTSPLLWRDVLDQA 394

Query: 78  FT--PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
            +  P++    + +  +   +   L        K        + F+           L  
Sbjct: 395 RSEVPERLAHHRLLETEYEQII--LPNLITTQEKYLRARRPGRGFRLNRRDRDAVWELVN 452

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y +  +   ++ F +        L +    A          +H+L+DE QD +   W +
Sbjct: 453 KYRDDSRIGGMISFAEAAAIAAQYLTRHSAVA----------DHVLVDEGQDLAPAHWRL 502

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
           IRSL  +          P  +F   D  Q IY       +                  + 
Sbjct: 503 IRSLVPE---------GPNDIFIAEDSHQRIYGHRLVLSRY-------------GIMTRG 540

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
               L L++R+TA IL    +V            D      +RS+R G    V +     
Sbjct: 541 RSRRLTLNYRTTAQILHWSTRVLEGGNYVDLDGADDDKLSGYRSARRGPD--VTVHPCGT 598

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
              +     +     +        +       +    +  +              I    
Sbjct: 599 ITEEFDVLAKIVGQWAKGRQPETTAVLVRDRSQRERVVDALHERGVQTRAVDHGSIPPGA 658

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKIS 403
            +V+   R      + +  F  +   I 
Sbjct: 659 PVVMTMHRAKGIEFSKVYLFGVSSRSIP 686


>gi|229526764|ref|ZP_04416168.1| DNA helicase II [Vibrio cholerae bv. albensis VL426]
 gi|229336922|gb|EEO01940.1| DNA helicase II [Vibrio cholerae bv. albensis VL426]
          Length = 618

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/541 (12%), Positives = 135/541 (24%), Gaps = 117/541 (21%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           +   K++   L  +D++     +L         +  +  +   I IDE QDT        
Sbjct: 172 FASIKEQEISLHHDDVVALMARML----AFPKFQKLLKSKFPIIFIDEYQDTD------- 220

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY-SFHGAEPKRVLREKRINQKRATNAGQKF 255
            +L E        + S   +   GD  Q IY S      +    +     KRA       
Sbjct: 221 SALAESIVQNLIDNDSGVMVGLFGDHWQKIYGSSACGLIRSPAGKIIEIGKRA------- 273

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
                  +FRS  +I+  ++++                             +    +   
Sbjct: 274 -------NFRSDKNIVECLNRM-----------------RPELPQAESDPSSTGTIKVYH 309

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           S            W                 R I  T S M+      S  K +      
Sbjct: 310 SNDWQGMRQAGGHWKDDLPEEETR-------RFIQQTKSLMVEHGWDMSLSKTK------ 356

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
             +L              + L + +                 +K       F +    D 
Sbjct: 357 --ILFLTNNLIAT-EQKFKNLADCFN-----------YSEDYLKKNDKYIEFFV----DT 398

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK--YIHELIH 493
             +  L      +   ++ +I   ++ +    +  +      + K   +     I +++ 
Sbjct: 399 VELTALAFQQRKYG--ELLQIKK-KNRSYLTSQADKTAWIENLEKLMRLRDTSTIGDVLD 455

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
           +    +       +  ++   Q    R    +      F+    R     Y  +  L   
Sbjct: 456 LLITTNVPRVPAKVSDSEARYQTLSVRDQESLAPDELRFVEKIRRLRAVPYFEVINLAEY 515

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +               ++    T H  KG E   V +V  G     +   + +  M    
Sbjct: 516 IN--------------DKTPFSTKHGVKGAEFDNVLVV-CGRGWNHYNWDQMLEWMEDGV 560

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                        T E    L YV  +RA   L +      +++
Sbjct: 561 P-----------------------QRNAETFERNRNLFYVSCSRAKHNLTLLFTQRLTDK 597

Query: 674 K 674
            
Sbjct: 598 S 598


>gi|223938584|ref|ZP_03630475.1| pathogenesis-related protein [bacterium Ellin514]
 gi|223892703|gb|EEF59173.1| pathogenesis-related protein [bacterium Ellin514]
          Length = 641

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/591 (10%), Positives = 154/591 (26%), Gaps = 97/591 (16%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           +  +   + ++   ++E+  K +       DR       +  L  L              
Sbjct: 112 RKWLKVSLTEEIRTIQEEHTKGRSGTKAAADREQKIVALQKRLDLLDGLSGFVYSPTGEN 171

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    L+  ++I      LK + +   +   +  +   +LIDE QDTS       + L E
Sbjct: 172 RTRGSLNHAEVIKIGAAFLKTKPLMQEL---LISKFPVLLIDESQDTS-------KLLME 221

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            FF  +  H +   L  +GD  Q IYS    +           +    +  +   +I   
Sbjct: 222 AFFAVQAAHDNSFCLGLIGDTMQRIYSDGKVDLG---------RNLPADWKKPSKVI--- 269

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            + R    ++ +++K+       +  +       + R+          +   +       
Sbjct: 270 -NHRCPHRVVKLINKI-------RSSAAIDDQQQKARTEASEGHVRFFIVPSLDVNK--- 318

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                                              +      + G    ++   + VL  
Sbjct: 319 -----------------------------SECEEQVRKRMAATTGDNEWLRLDGVKVLTL 349

Query: 382 KRKDTPL---ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFV 438
           +            + R L           D   L       +++        + ++ +  
Sbjct: 350 EHHMAAQRLGFAEMFRQLDGVADYKTGLRDG-SLPLLRFFSEIVLPLVTAKREGNEFAVA 408

Query: 439 CMLKSPLFNFSEDDIFKI--CTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
            +++      S + +F+I                   A          +  ++ +     
Sbjct: 409 ALMRQNSPLLSREALFEIGTNQAAQVKAAKTGVEALLALFTGGAQPTFLAVLNSIADTKL 468

Query: 497 FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
           F  P      +                +                +++  +L  + + L+ 
Sbjct: 469 FTIPESLLPFVSDKAASEPTSSETEEADEE--------------ESATKTLVAVRAFLDT 514

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               IK        +    T    KGLE P V ++                         
Sbjct: 515 PFQQIKPYADYVLGDSWFATHQGVKGLEFPRVLVIMDDEG------AGGFLFGFEKLFGA 568

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                      ++          K+++ +   RL YV  +R+ + L +  +
Sbjct: 569 KEKSSSDIRNEQDG---------KETSVDRTRRLFYVTCSRSQNSLALVAY 610


>gi|49483126|ref|YP_040350.1| hypothetical protein SAR0928 [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|257427681|ref|ZP_05604080.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257430316|ref|ZP_05606699.1| exonuclease RexB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433013|ref|ZP_05609373.1| exonuclease RexB [Staphylococcus aureus subsp. aureus E1410]
 gi|257435917|ref|ZP_05611965.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            M876]
 gi|282903503|ref|ZP_06311394.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C160]
 gi|282905281|ref|ZP_06313138.1| exonuclease RexB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910542|ref|ZP_06318346.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|282913738|ref|ZP_06321527.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M899]
 gi|282918664|ref|ZP_06326401.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C427]
 gi|282923654|ref|ZP_06331334.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C101]
 gi|283957704|ref|ZP_06375157.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            A017934/97]
 gi|293500780|ref|ZP_06666631.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            58-424]
 gi|293509731|ref|ZP_06668442.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            M809]
 gi|293524318|ref|ZP_06671005.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M1015]
 gi|295427449|ref|ZP_06820084.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|297590191|ref|ZP_06948830.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            MN8]
 gi|81651447|sp|Q6GIC2|ADDB_STAAR RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|49241255|emb|CAG39934.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|257275874|gb|EEV07347.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257279093|gb|EEV09704.1| exonuclease RexB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282428|gb|EEV12563.1| exonuclease RexB [Staphylococcus aureus subsp. aureus E1410]
 gi|257285108|gb|EEV15227.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            M876]
 gi|282314522|gb|EFB44912.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C101]
 gi|282317798|gb|EFB48170.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C427]
 gi|282322770|gb|EFB53092.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M899]
 gi|282325934|gb|EFB56242.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|282331688|gb|EFB61200.1| exonuclease RexB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596458|gb|EFC01419.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            C160]
 gi|283791155|gb|EFC29970.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            A017934/97]
 gi|290921281|gb|EFD98342.1| exonuclease RexB [Staphylococcus aureus subsp. aureus M1015]
 gi|291095785|gb|EFE26046.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            58-424]
 gi|291467828|gb|EFF10343.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            M809]
 gi|295128837|gb|EFG58468.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|297576490|gb|EFH95205.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            MN8]
 gi|312438671|gb|ADQ77742.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            TCH60]
 gi|315194498|gb|EFU24890.1| hypothetical protein CGSSa00_12265 [Staphylococcus aureus subsp.
            aureus CGS00]
          Length = 1158

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 198/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQINPMLRLLKTDVLTTSYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I          +    F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLSQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 1020


>gi|218288827|ref|ZP_03493078.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240916|gb|EED08093.1| ATP-dependent nuclease subunit B-like protein [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 1169

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 67/669 (10%), Positives = 159/669 (23%), Gaps = 127/669 (18%)

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
             +     +A  I++++  +          ++ +DI V V        I           
Sbjct: 350 DRAEELCAVADEIAHLVQHER---------VRPRDIAVCVPT---LDGIGRDLADELALR 397

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR 460
            + V  +    L DH   + L        +  D  +   +L+ PL      + F +  + 
Sbjct: 398 GVPVSIDAFSTLADHPVGQLLRGAIAAARTGFDLDAVAALLRCPLVPVKRREAFDLYLRE 457

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT---LILGAKKGRQQF 517
           H       ++        ++       + +           D              R   
Sbjct: 458 HGVRGFAAWLAPEPWAFAARAPRSASGLRDEEADEIRRHVGDALRPVVQAFAQPTLRPAE 517

Query: 518 ISRFGNE---VIDVLDEFLNFTLRNEQNSYSSLQELISE--------------------- 553
            +R   E      V D      ++   +  + +    +                      
Sbjct: 518 AARALWELVQAFRVKDALAQSVVQVGDDPMAGVIHEQAWSGVTALLDDLATLEPEIALPA 577

Query: 554 -------LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
                  LE           ++ + V +     A     P VF+V         +     
Sbjct: 578 YEVADLVLESMASLRLTRIPSDVDAVFVCDFARADNWSRPRVFVVAADDASLPPRVEPSG 637

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            +              P  ++  +    L              + Y  MTRAS+ L++  
Sbjct: 638 ILRDDERLAFAEVFLRPLGRTSEDERRALE------------CMPYRVMTRASEALVVTY 685

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI-------------------------KLT 701
            ++    ++        +V     + +  +                           +L 
Sbjct: 686 AASVGGIERHLAPALSSLVERGHLSVDVARGEGVVPVHPVQAMRLLADALSRVHTGARLD 745

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
                                       +  L    +  +     I++   +P  ++ S 
Sbjct: 746 EVAQDPVVQDVLTHVLTGAGDVARFHRVLAGLCHRPRPWQLPADWIRHLYGDPIRVSVSR 805

Query: 762 IDTKGKTN-----------LESLLSDNQTFNRGLIIH--------KLLQVIFTLPEHKRK 802
           ++T  K +               L      + G  IH        +L +    L     +
Sbjct: 806 LETHAKCSYRHFAQYALRLEPLALQPEAERDAGTWIHAAVQLATQRLAEAYPRLAALGDE 865

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM------------TTAM---SCDSYS 847
               +      +          L S     +  +                    +     
Sbjct: 866 ELEQALREIADQALAQAAADTKLESTLARPDVAVYVEDRRRHFEFVVRAIWMQLARGQMR 925

Query: 848 EVSVSGKINCPKKD------IIISGRIDQISISQQN---IFIFEYKTHHHVPQEIEHIPY 898
            + +  +             +++ GRID++   +Q    + +++YK+          +  
Sbjct: 926 PLWLEKEFRDVDMGAWNGLRVVLDGRIDRVDRLEQGELALCVYDYKSS-ETSLHPSKVYQ 984

Query: 899 THIAQLSIY 907
               QL +Y
Sbjct: 985 GLQLQLLMY 993


>gi|18535590|gb|AAL12240.1| DNA helicase [Pseudomonas aeruginosa]
          Length = 342

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 66/202 (32%), Gaps = 36/202 (17%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK------YLNAHYEEAK 141
           +I ++  +L+E+ +       +     N     +   +   +A        + + Y    
Sbjct: 58  DIRRRISELEEEFENYSSRVRQTTRDRNKADQERYVRSLEAVAGVRTFNYGVGSDY---- 113

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
               +L  ED++   + LL+ R +   +   +      + IDE QDT          + +
Sbjct: 114 -AKGILGHEDILQLADFLLQNRPLFRRV---VALSYPFVFIDESQDTFPG-------VVK 162

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            F   +        L   GD  QSI+     + +     +                I  P
Sbjct: 163 SFKEVEAQMQGKFCLGFFGDPMQSIFMRGAGDIQLEDHWRA---------------ITKP 207

Query: 262 LSFRSTADILTVVDKVFSIPEN 283
            +FR    IL V + V +  + 
Sbjct: 208 ENFRCAKQILDVANAVRAQGDG 229


>gi|77164501|ref|YP_343026.1| hypothetical protein Noc_0987 [Nitrosococcus oceani ATCC 19707]
 gi|76882815|gb|ABA57496.1| DNA helicase/exodeoxyribonuclease V, subunit B [Nitrosococcus
           oceani ATCC 19707]
          Length = 911

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/548 (10%), Positives = 131/548 (23%), Gaps = 78/548 (14%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-----FSEDDIFKICT 458
              +    L D+  +   + +      +   +     L+SP        FS   +     
Sbjct: 293 YNLSLAQPLADNPLVHTALLILELSKGELSMVEMGAFLRSPFVGAAEQEFSHRALLDAYL 352

Query: 459 QRHETET------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           ++   E           I         +   + + + +              +    +  
Sbjct: 353 RKTREERVSLERLWKAAITAREEDANHRCPALGERLQQFKVEVDSLPARQPPSGWAQSFT 412

Query: 513 GRQQFI-----SRFGNEVIDVLDEFLNFTLRNEQNS--YSSLQELIS--ELEQYPPTIKR 563
              Q +         +E    +  +               SL++ ++  +          
Sbjct: 413 CWLQLLGWPGERPLDSEEYQAVSAWHKSIQSFSSLDRVVPSLKKNVAIGKFRHLLVETLF 472

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                   V++M V  A G +    +++     ++         +   L     +P    
Sbjct: 473 QPENPIVPVQVMGVLEAAGEQFDAAWMLGLHDGIWPTAPRPNPLLPIELQRHYRLPH--- 529

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                        +     T+    RLL          +I+       +          +
Sbjct: 530 ----------ASAERELAYTRVVTERLLASA-----PVVIVSHPRREGDRDLRPSPLIAE 574

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
           +        +        N I +   +        P      +      L+  Q      
Sbjct: 575 LASVLPERLQLASVESYVNEIQQTGRMETLVDAQGPPLEAGAQVGGGTGLLKAQAAC--- 631

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                                 G   LE      ++ ++G++IH  LQ +    + + ++
Sbjct: 632 ------------PFRAFAEYRLGAKGLEEPSVGLESLDQGILIHVALQYL--WEKLQNQH 677

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRL---LENPMMTTAMS-------------CDSYS 847
            + S   +      A+  K  + + T +   +     T                      
Sbjct: 678 TLLSCSAEELHGLIAEAAKQAIATQTAVRPRIFTERFTAIEQERLEQLLLEWLERDKQRP 737

Query: 848 EVSV---SGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEI-EHIPYTHIA 902
             +V             + +  R D+I   +     I +YKT    P+      P     
Sbjct: 738 PFAVLHQERSQPLNLGGLSLDTRADRIDQLESGERVIVDYKTGRSNPRHWFGERPEE--P 795

Query: 903 QLSIYEKI 910
           QL +Y   
Sbjct: 796 QLPLYCIA 803


>gi|240141288|ref|YP_002965768.1| hypothetical protein MexAM1_META1p4882 [Methylobacterium extorquens
           AM1]
 gi|240011265|gb|ACS42491.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 1047

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/460 (11%), Positives = 116/460 (25%), Gaps = 54/460 (11%)

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
           QR+ TE V    ++         + ++  +   +   +     +   L+  A   R+   
Sbjct: 498 QRNATERVPRAKKRLKPVDWDLAEDILDRLEIALDAFRTDLQPEIGNLVALAAGHREACE 557

Query: 519 SRFGNEVI-----------DVLDEFLNFTLRNEQNSYSSLQELISEL---EQYPPTIKRA 564
              G               D LD   +     EQ          +          T+  A
Sbjct: 558 RMMGEADEGDADETDDPSLDTLDGLFDDLESAEQEELPGRFSDYAAFFTALSRDRTVACA 617

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
             + H  +RI+    A+ L    + L      V+  +      +   +  D G+     +
Sbjct: 618 QRSAHPRLRILGPLEARLLSVDRIVLGGLDETVWPVRQTTDAFLNRPMRGDVGLSPPERR 677

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
                +     +                  +TRA+ +           E      + +  
Sbjct: 678 IGQAAHDFVQGLGTHDA------------VVTRAAKR-----------EGSPTVPSRFLQ 714

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
              +F  D             +      +     P                +  +  +  
Sbjct: 715 RLRAFGGDAVWADAIARGQRLRGLAARLDRGQEAPPPRLKR-----PAPKPDPALFPERL 769

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHK 800
           S  + +       +       G   LE +        RG +IHK+L              
Sbjct: 770 SVTEIETLVRDPYSIYARHILGLEALEPIAVVPGAAERGSLIHKVLGDFSAAHPGALPAD 829

Query: 801 RKNFITSY-------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
            +  + +                 A+ +          LE            ++E S   
Sbjct: 830 AETLLYAIAFDAFGPLQDQYPELYAEWFPRYERMAVAFLEWEASQRQGLHTIHAERSGKV 889

Query: 854 KINCPKKDIIISGRIDQI-SISQQNIFIFEYKTHHHVPQE 892
            I   ++   +S R D+I + +  +  I ++KT       
Sbjct: 890 TIPLGERTFTLSARADRIEARADGSYCIVDFKTGTPPSNR 929


>gi|134097709|ref|YP_001103370.1| UvrD/REP helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|291006331|ref|ZP_06564304.1| UvrD/REP helicase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910332|emb|CAM00445.1| UvrD/REP helicase [Saccharopolyspora erythraea NRRL 2338]
          Length = 658

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 69/242 (28%), Gaps = 34/242 (14%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
               R      +    T             YE    +  V D  D+++   D L ++   
Sbjct: 368 LEAYRHAPRRGRGGNLTPGFRAHVWEFYCEYERELSERGVYDHNDVLMRALDELGRKP-- 425

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                 +++     ++DEVQD +LI   ++ +++ D          P  L  VGD +Q +
Sbjct: 426 ------LERRFTAAVVDEVQDLTLIGLRLVHAISGDA---------PNQLLLVGDGQQQV 470

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y+      +                        L  ++R+   I+    +      N   
Sbjct: 471 YAGGWRLSE-------------AGISLSGRGEVLRRNYRNRTTIVDEACEF--DAVNRFD 515

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
             +         +  +   G    W    +  +        +     D+     + +  A
Sbjct: 516 DLDGGPAVTMRSALPVLGGGRAVHW--RGADQEEALVAALRALDDPSDAAVLTRTNNAAA 573

Query: 347 RR 348
           R 
Sbjct: 574 RW 575


>gi|319947224|ref|ZP_08021458.1| exonuclease RexB [Streptococcus australis ATCC 700641]
 gi|319747272|gb|EFV99531.1| exonuclease RexB [Streptococcus australis ATCC 700641]
          Length = 1092

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 72/728 (9%), Positives = 193/728 (26%), Gaps = 99/728 (13%)

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              V   ++      ++    +  +T     L  +   ++      +    +        
Sbjct: 255 PSYVGQGKEDAFSRMTRILEARYDFTEVDVELSDQDREAVEIWTCNHQKEELEAVARSIR 314

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
                  + KDI VL+    D        + + + Y+I         +  H  ++ +  L
Sbjct: 315 QRLYEGARYKDIRVLL---GDVDAYQLQLKTIFDQYQIPFYLGKSESMAQHPLVQWVEYL 371

Query: 425 GRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            R    +      V +LK+ L+   + +DI          E               + + 
Sbjct: 372 DRLRRYRFLTEDVVNLLKTGLYGTLTREDIDHFEQYVRFAEIKGLAAFSRDFTANHQDKF 431

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGR-----------------QQFISRFGNEVI 526
            ++ ++++          +F+       +G                  QQ   R   + +
Sbjct: 432 DLERLNQIRQQVIS-PLQEFYKTKSQTSQGLLKKFAQFFQEGQLAQNMQQLAGRGSEQEM 490

Query: 527 DVLDE--------FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
           +  D+           F    EQ   +    L   L        R   A  + V + +  
Sbjct: 491 ERYDQVWKSFSHVLEQFAQVFEQMKVTLDDFLSILLSGMLLASYRTVPATVDVVTVQSYD 550

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             + L +P V+ +    + F                       + Q+      +    + 
Sbjct: 551 LIEPLSAPYVYAIGLTQERFPK------IAKDQSLLTDEERQVLNQASDEQANLQIASQD 604

Query: 639 LKKSTQEEYNRLLYVGMTR-----------------------ASDQLIICKHSNTSNEKK 675
             +  +     L      +                           L +   S  +    
Sbjct: 605 NLRKNRFVALSLFNAATKQLVLSSPILVNEVDDKMSPYLLELTKAPLNLSVISKKATASS 664

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
            +  ++  ++       +     +L+        +A         +  L   +  + L  
Sbjct: 665 QDMGSYQALLARLIELHQGEIDQELSKEEATFWAVAIRVLRKKLASEDLHIPQISQNLTT 724

Query: 736 EQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGL 784
           +    + L +       +   L+ S ++T  +              E         + G 
Sbjct: 725 KVLEDETLEALYP--KGQALSLSASALNTYYQNQYSYYLHYVLGLQEEWHLRPDARSHGN 782

Query: 785 IIHKLLQVIFTLPEHKRKNF---------------ITSYCTKNAKLWPAKEYKNLLLSIT 829
            +H++ + +   P     +                   Y       +  +   +   +  
Sbjct: 783 FLHRIFERVLKDPSEGDFDERLNKAIRETSQETEFALLYQENAMAAFSKELLLDTARATG 842

Query: 830 RLLENPMMTTAMSCDSY---SEVSVSGKINCPKKDIIISGRIDQISI-SQQNIF-IFEYK 884
           R+L +      +  ++    ++      +    + +++ G++D+I   S      + +YK
Sbjct: 843 RVLAHNDRIETIGEEALFGQADRPF-LTLE-DGRPLLVKGKVDRIDRLSDTGALGVVDYK 900

Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKIL---KDSYPNKSLVCLLIYVSEPKVFIIPQN-KL 940
           +        E       +QL  Y   +   +D  P+K +   +       + ++     +
Sbjct: 901 SSETKF-NFEKFFNGLNSQLPTYLSAIKDFQDFDPDKGIFGAMYLQMTDPLVLLKDTKAV 959

Query: 941 NKAFAEIS 948
           + A   + 
Sbjct: 960 DDAVQAVL 967


>gi|300023816|ref|YP_003756427.1| double-strand break repair protein AddB [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525637|gb|ADJ24106.1| double-strand break repair protein AddB [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 1038

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/386 (12%), Positives = 101/386 (26%), Gaps = 41/386 (10%)

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMT 576
           +    G+       + L+        S +   +L + L        R  +A H  + I  
Sbjct: 569 WQGESGDTASRFFAKLLDDATPAVAISAADYADLYATL--LARENVRERTAVHPRISIWG 626

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
              A+  +  V+ L       +         +   +  D G+P    +     +  + L+
Sbjct: 627 PFEARLQQPDVLVLGSLNEGTWPEAAEPGAWLNRPMRRDLGLPSPEEEIGRAAHDFTSLL 686

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                           + +TRA          +      S        +      +  + 
Sbjct: 687 GAKT------------IYLTRAEK-------VDGVPTVPSRWLMRMRALLKGMKLESVLV 727

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             K   +  +                P        + M    I + + +P          
Sbjct: 728 ADKPWLAWARARDRIVGKRIAIKPPEPRPALALRPRRMSVTDIERWIANPYATYARHILK 787

Query: 757 LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLW 816
           L P          L  L +      RG ++H +L         +  +   +   K A   
Sbjct: 788 LEP----------LPPLGASPDASLRGALVHDVLSRFANAFPDRLPDDPLAELEKIAADV 837

Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCD----------SYSEVSVSGKINCPKKDIIISG 866
                 N  ++   +       +  +              +E+S +  +        ++ 
Sbjct: 838 LQTYTGNARIAAFWMPRLKRFLSWFAEGEEKRREGVRSVIAEISGALVLAPTPDPFTLTA 897

Query: 867 RIDQISISQQNIFIFEYKTHHHVPQE 892
           R D+I  +   + I +YKT     QE
Sbjct: 898 RADRIDDTGSAVIITDYKTGAIPKQE 923


>gi|116510846|ref|YP_808062.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactococcus lactis
           subsp. cremoris SK11]
 gi|122940438|sp|Q033I2|ADDB_LACLS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|116106500|gb|ABJ71640.1| DNA helicase/exodeoxyribonuclease V, subunit B [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 1099

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 77/704 (10%), Positives = 181/704 (25%), Gaps = 132/704 (18%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
               + ++    +  + +  +  +   R+A  I   I                KD  VLV
Sbjct: 282 DEKIELKAEDEKYFRIWEAENQKVEIERVAKEIRQKISQGAF----------FKDFTVLV 331

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
               D        + + + Y+I         ++ H  +    +L     +       V +
Sbjct: 332 ---GDPAAYEITLKEIFDLYEIPFFYAQEESMSQHPLVIFFESLFAIKKNNYRTDDVVNL 388

Query: 441 LKSPLFN--------FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK------ 486
           LKS ++             + +    +    +   E   +     I     + +      
Sbjct: 389 LKSKVYTDVNLDEEVIDYFEYYVQKYKISGRKKFTEEFIESEFSQIELVNEMREKLLGSE 448

Query: 487 -----YIHELIHIAQFCSPHDFFTLILGAKKGRQQF-----ISRFGNEVIDV-------- 528
                ++             D    +L               +   NE            
Sbjct: 449 SPLQVFLGNNRQKTGKKWVSDL-QALLENGNVMANMNAYFSAAELQNEHQMADKHEQVWQ 507

Query: 529 -----LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
                L+EF             S++ L   L        R   AN + V +      +  
Sbjct: 508 MLISTLNEFFAV---FSDEKLKSVEFLDILLAGLKNAKYRQIPANVDVVNVKDYELVEPK 564

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
            +  ++ +      F         +           + I Q+   N  +  L     +  
Sbjct: 565 TNNYIYAIGLSQTNFPRIKKNSTLLSDEE------RLEINQTTDENQFIEQLNVANYQKN 618

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
           Q     L+        + L++      +NE+      +   + D+     +  +      
Sbjct: 619 QFTVLSLINSA----KESLVLSMPQIMTNEQGEFSPVFQLFLKDADEKILQKIQGVNLFE 674

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL------ 757
             +    +        +      E                   +K++ +   IL      
Sbjct: 675 SLEHIGNSRSVIAMIGQIERELVESEETNEDKRVFWSSIFRILVKSNADFQKILLDLAKD 734

Query: 758 ---------------------NPSTIDTKGKTNLESLLSDNQTFN-----------RGLI 785
                                + S+ +       +  L +  +              G  
Sbjct: 735 IDTVNLAPDTLEQIYGDKIYASVSSFERFYNCEYQYFLENTLSLETFENIDINSKIVGNF 794

Query: 786 IHKLLQVI---FTLPEHKRKNFITSYCTKNAK------------LWPAKEYKNLLLSITR 830
            H++ + +     L        +T +  +  K             +     + ++     
Sbjct: 795 FHEVFEKVMKETDLSAENFDEKLTLFLQEVDKNYSRYFTQDATARFTWSNLEEIVRQTAT 854

Query: 831 LLE----NPMMTTAMSCDS----YSEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IF 881
           +L+       + T ++  S     SE+      N    DI + GRID++     +   + 
Sbjct: 855 VLKATVSTDELKTLLTESSFGLSKSELG-----NFSVDDIYLRGRIDRLDQLSTDYLGVI 909

Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
           +YK+  H  + ++        Q   Y  ++K ++PN+ +   L 
Sbjct: 910 DYKSSAHSFK-LQEAYDGLSLQFMTYLDVIKQAFPNQKIWGALY 952


>gi|107099820|ref|ZP_01363738.1| hypothetical protein PaerPA_01000840 [Pseudomonas aeruginosa PACS2]
 gi|37955723|gb|AAP22562.1| putative helicase [Pseudomonas aeruginosa]
          Length = 493

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 30/180 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q  + +L+DE QD + +  ++              H     +  VGD  Q +Y F GA
Sbjct: 187 LSQRFDCMLLDEGQDINPVIADI-------------AHWQRIRMAIVGDPHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E               ++         L  S+R    I  V + + S     + L     
Sbjct: 234 E-----------DALNSDWMVGAEEHYLTQSWRFGPAIAHVANIILSYKGETRKLQGLGP 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES------WTSYFDSLPQESSASILA 346
            T+  +S          +   V+   ++     + +      W    DS        + A
Sbjct: 283 QTLVKKSLPADLPHRTFIHRTVIGVIENALQRVRNNPAPKFYWVGGIDSYSLRDLEDLYA 342


>gi|121594799|ref|YP_986695.1| UvrD/REP helicase [Acidovorax sp. JS42]
 gi|120606879|gb|ABM42619.1| UvrD/REP helicase [Acidovorax sp. JS42]
          Length = 586

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 77/611 (12%), Positives = 164/611 (26%), Gaps = 112/611 (18%)

Query: 23  LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQK 82
            P      +      ++  G P   K    L++A + +  +      S+ FL+       
Sbjct: 3   EPCKLRESVMACEGHALVIGGPGSGKTTLALRKAVK-RIRDGMLPGQSALFLSFSRAAVA 61

Query: 83  NIITQEINKKSPDLKEKLK------------KSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            I+     + +   +E+L             K+    +    R +          S  L 
Sbjct: 62  RILDAAKLESTKAEQEQLSIQTFHSFFWDILKAHAYLLGAPHRLSILLPHDEKALSGGLG 121

Query: 131 -------KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILID 183
                  ++L    E   ++   + F+    N   LL +      +   I      I++D
Sbjct: 122 DEDEGWDEWLVER-ERLFREEGRIAFDLFAPNATALLARSSH---LLASIAHRHPIIIVD 177

Query: 184 EVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH-GAEPKRVLREKR 242
           E QDT    W+ I+ L                +  + D +Q I+ +  G  P+RV+  + 
Sbjct: 178 EAQDTGQYAWQCIQMLA-----------PHTQVLCLADLEQQIFDYLPGVGPERVIAIRE 226

Query: 243 INQKRATNAGQKFSIIELPLSFRS-TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
             +    + G          + RS  ++IL   + + +               +   + R
Sbjct: 227 ALKPHEIDLG--------TQNHRSPDSEILAFGNDILTAKPR-----GAPYKGVSALAYR 273

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
             +           +  +                                    ++ +  
Sbjct: 274 PEKPPPNWNHLLRRALGE------------------------------------LLKSIR 297

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
             S+ K      + I +LV   +    ++     L  +    V      +L D       
Sbjct: 298 AQSDKK-----VETIAILVTNNRSALKMSNALNALGANVGKPVR---HKLLFDEAEALLS 349

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
                F+L  +D       + +     S + I        +       + + AN      
Sbjct: 350 ARFAAFLLEPKDLAKLEADVAT-----SMEMIAAARRATGQGRKEVAKLLEQANKIKGGK 404

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
              I   + L  +    + +DF           +  +     + +  +   L+F +   +
Sbjct: 405 ALNINIANALRGLISGLAVNDFSGDPAEDWLTVKHELRATNQDELTRVAAQLDFLVAFRR 464

Query: 542 NSYSSLQELISELE-------------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
               S       L                              +++M  H AKG +   V
Sbjct: 465 GHRISAALSDEWLRDGAYTNARTALDLALAQEQILDGVEPPMGLQVMNFHKAKGKQFDGV 524

Query: 589 FLVDTGSQVFS 599
            LV    +   
Sbjct: 525 ILVREARRTGP 535


>gi|27375864|ref|NP_767393.1| hypothetical protein bll0753 [Bradyrhizobium japonicum USDA 110]
 gi|27349002|dbj|BAC46018.1| bll0753 [Bradyrhizobium japonicum USDA 110]
          Length = 1048

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/509 (10%), Positives = 128/509 (25%), Gaps = 65/509 (12%)

Query: 451 DDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           +++ K+           E   +     + + Q +I  + + +   +  +P   +     A
Sbjct: 488 EELAKLWRSEVSALHKAEPRARLKAEDLDRVQALIDALRQALAPIESLAPSKPYDFAELA 547

Query: 511 KKGRQQFISRFGNEVIDVL----DEFLNFTLRNEQNSYSS--------LQELIS-ELEQY 557
            + R+  I    +E    L     E L      +              L +        +
Sbjct: 548 HRHREIMIELSRDEQGIPLAFEEREGLALAGAFDDLLRGGTTSGLIVPLPDYPDVFQTAF 607

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                R        ++I     ++ +++  + +      V+         +   +  + G
Sbjct: 608 GDRAVRRRDKPGARLQIYGPLESRLMQADRIIVGGLIEGVWPPAPRIDPWLSRPMRHELG 667

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
           + +   +     +  + L+                       D++I+   +         
Sbjct: 668 LDLPERRIGLSAHDFAQLLGG---------------------DEVILTHSAKAGGAPAVA 706

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA-YEWSTHHPENTPLEREETIKQLMDE 736
            R  + +   +  +  +         +   + +   +      +  P     T    M  
Sbjct: 707 SRFLHRLEAVAGDDRWKAAIRAGEKYVRFADRLDQPDEVRPIKQPEPRPPRATRPLKMSV 766

Query: 737 QKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTL 796
             I   L  P          L            L+ +       +RG  IH  +      
Sbjct: 767 TAIEDWLRDPYTIYAKHILRL----------DALDPVDMPLSAADRGSAIHDAIGEFTER 816

Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN 856
              +  +          +   A   +              +    S    +   V   I 
Sbjct: 817 YATRLPDDPARVLRAIGEKHFAPLMERPEARALWWPRFQRIARWFSEWETARRDVVEAIT 876

Query: 857 CPKKD-----------IIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
              +              +S R D+I         I +YKT        + +      QL
Sbjct: 877 AETRGEISITLDNERSFRLSARADRIERRQGGGYAILDYKTGQPP--TGKQVRMGLSPQL 934

Query: 905 SIYEKILKD-----SYPNKSLVCLLIYVS 928
           ++   IL++          S+   L+YV 
Sbjct: 935 TLEAAILREGGFPDIDAGSSVSQ-LVYVR 962


>gi|90425030|ref|YP_533400.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
 gi|90107044|gb|ABD89081.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18]
          Length = 672

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 94/699 (13%), Positives = 187/699 (26%), Gaps = 102/699 (14%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNP-TILKKAQTLQQASQTQCIEERF--SL 68
           +   I  + W      +  ++   +   E G   +       L +          F    
Sbjct: 66  AKLAILANRWRWRRQGICVLSHTNAARNEIGTKLSSSPIGGALLRYPHFVGTIHAFVNEF 125

Query: 69  LSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL---- 124
           LS  +L  K    K I TQ   K    L  +  K+  E   + +    Y     T     
Sbjct: 126 LSVPWLRSKGNLIKAIDTQIALKHRMGLLGRNWKAAMEARHLTEFALMYGRADYTADNKG 185

Query: 125 ---ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
              A+  LA+ + A   ++  +     ++++ +  N+LL   D    +   + +    + 
Sbjct: 186 NLGAATPLARAMVAA-TKSSSEAGYFCYDEMFVWANELL---DTRPEVAAALRERFPLVF 241

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD S +Q  ++  L  +       + S R  F  GD  Q+IYS             
Sbjct: 242 IDEAQDNSELQSALLHRLFLE-----GDNPSRRQRF--GDSNQAIYSSV----------- 283

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
                  T+        +LP S+R    I    ++V       +GL       I      
Sbjct: 284 DDKAGAHTDPFPSQIRFDLPRSYRFNQTI---ANQV-------KGLGVIPQQLIGAGPGA 333

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDT 361
                  +    ++   +S  N          +   +    + +   +A  +        
Sbjct: 334 SVVKTEPKATTVILFDDESMSNVLPRYGAHLVEQFTENELRAGVFVAVAGVVKEP-EQPD 392

Query: 362 IFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDL 421
                        D     R    T    +L R                           
Sbjct: 393 PVPRFIGNYAPTFDPACGRRDSLQTTFAQYLARA-------------------------- 426

Query: 422 MALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF 481
               RF +++  D+       S L N +   + ++        ++Y              
Sbjct: 427 ----RFEMNKLRDV-------SSLVNATASAVLRLADIAGADLSLYSRKSPH-------- 467

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
           + V + +       +    +    L+L  K    +       + +      ++       
Sbjct: 468 RRVKELLDG-----KAADYNALIELVLVHKGDLSKAEWEESGKALA-----VSVAKAIAG 517

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
           N+  +    ++  E    +            R   + +       V   + +   V    
Sbjct: 518 NAPPTTNAFLAWPEHGSGS---EVEEESVATRTDNLFSYPPDGPKVHVRLGSIHSVKGET 574

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
           H   + +    +D     +      +R+       K           RL YV MTR S  
Sbjct: 575 HTATLVLESYFHDHHLSELKAWLLGARSGGFKKGNKMEGPRLLG-RLRLHYVAMTRPSHL 633

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           L I    +   E ++        +     +         
Sbjct: 634 LCIAMRKDAFTEAETTILRDRGWLIIDCCSAPEAIAKPT 672


>gi|268607992|ref|ZP_06141723.1| ATP-dependent nuclease subunit B [Ruminococcus flavefaciens FD-1]
          Length = 1112

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 97/921 (10%), Positives = 233/921 (25%), Gaps = 195/921 (21%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
              +    L  ++K++      + +R   +          +    +   Y+    +    
Sbjct: 114 GFAEDVLKLIGEMKRAGLTPEALMERSQMFGDRLRFKT--SDIAMIYMEYQRLMNEYG-- 169

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEIN--HILIDEVQDTSLIQWEVIRSLTEDFFV 205
            F+D I        +    A    ++        + +DE +  +  Q  ++R +      
Sbjct: 170 -FKDSI--------ENIKVAAEIAELQGYFRGRSVYLDEFESFTADQIAMLRVMISSAEN 220

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                 +        D+   + +      + V +     +   T   ++  + E   S+R
Sbjct: 221 VCIALRT--------DD---VTAGRFTLFETVNKTYEDIKSICTEFRKETVLTECSESYR 269

Query: 266 S-TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
             + DI  +   V    +                                    +    P
Sbjct: 270 FISPDIAYLSSHVLRNKK---------------------------------YSPEEAPKP 296

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                    D   +          ++ +I  +I +        ++ ++ ++I V+     
Sbjct: 297 DNIKIFEARDMYSE-------VEYVSASIKRLIHS--------RKDLRYRNIAVI---SN 338

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLS-FVCMLKS 443
           D      + +     Y I    +    +T    +    +L   + S++        MLKS
Sbjct: 339 DITAYAGIIKAAFKRYDIPYFLSVEKPVTHTAVMVYFTSLIDLLCSRKFRSELIFRMLKS 398

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKF-------QHVIKYIHELIHIAQ 496
            L + S  DI  +    ++     E  +                 + VI+ +  L     
Sbjct: 399 GLTDVSLTDISALENYCYKWTVDSEIWESEFTAPDDALDSLEAIRKTVIEPVFALRKKLS 458

Query: 497 FCSPHDFFTLILGAK---KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
                     ++       G ++ + R  +         +N     E      L   + +
Sbjct: 459 KKCTAKKICTLIYEHLVSGGIEKNVGRMMSG-------LINSDRAYEAAEIKRLWGCLID 511

Query: 554 L-----EQYPPTIKRAHSANH------------------NEVRIMTVHTAKGLESPVVFL 590
           +     E           A                    + V   +  TA+      VF+
Sbjct: 512 ILDSICETLDENEMSFSEAAKLMKSMIGRINYSVPPQTLDAVMTASARTARLNAPKAVFI 571

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +      F ++                    +  +   + I +                +
Sbjct: 572 MGANDGDFPNQVTVHGLFSEPDRQKLAEKDLLVSTPLADLIAA-------------ERLV 618

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER--VKKIKLTNSINKDE 708
           +Y  ++  S++L I    +  + +        D +   F  D     +     +      
Sbjct: 619 VYKSVSAPSEKLFISYPLSDLSGQTKYPAQIIDSIIKMFGTDRIRLTEDDIPVHYYAATL 678

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE--------------- 753
             A+     + E+         + LM      ++L   +    +E               
Sbjct: 679 HSAFYHYMQNRESNTPSAAAVEQLLMSRPDYKRRLIYVLSRSGHEQEYLIESEIMENLKS 738

Query: 754 --PYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLL---------- 790
             P  L+ + ++     +                 +      G + H+            
Sbjct: 739 FSPLRLSSTGLEEYDLCHFKFFCDKCLGLHPREKIELDARIAGELTHECFFGLLSSRSKQ 798

Query: 791 -----------QVIFTLPEHKRKNFITSYCTKNAKL------WPAKEYKNLLLSITRLLE 833
                      + I    E  R N +     K+AK          +  +  + +   L+ 
Sbjct: 799 EFISMSYEDMREEIGRKAEEYRNNKLAGDFGKDAKFGLIFSKLTDRLSEVFIHTQQSLMA 858

Query: 834 NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ--ISISQQN--IFIFEYKTHHHV 889
           +  +      D     SV        K +   G +D+  I        + I +YK+    
Sbjct: 859 SDFVPHKFELDLRESHSVVLPF-GNGKQLSFGGIVDRADICKINGRDYVRIVDYKSSRKN 917

Query: 890 PQEIEHIPYTHIAQLSIYEKI 910
               E +      Q+ +Y   
Sbjct: 918 I-TAETLGCGINMQMLLYLFA 937


>gi|467028|gb|AAA17213.1| u2126v [Mycobacterium leprae]
          Length = 212

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 17/143 (11%)

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLL------ENPMMTTAMSCDSYSEVSVSGKINC 857
                         AK+   LL     LL      E+P      +  S  E  V  ++  
Sbjct: 7   AAERDLD---GELDAKQRTQLLDEARTLLSGYYRLEDPT---RFNPQS-CEQRVEVELA- 58

Query: 858 PKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
               +++ G ID+I ++    + + +YKT    P       +  + Q+  Y   L  S  
Sbjct: 59  --DGLLLRGFIDRIDVAATGELRVVDYKTGKAPPAAQALAEFKAMFQMKFYALTLLHSRG 116

Query: 917 NKSLVCLLIYVSEPKVFIIPQNK 939
                  LIY+++ ++     ++
Sbjct: 117 VLPARLRLIYLADSQLLDYAPDR 139


>gi|251778071|ref|ZP_04820991.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082386|gb|EES48276.1| LexA repressor [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 513

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 25/148 (16%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +  +    +DF+D+ +   +          ++    ++  HILIDE QD + +
Sbjct: 202 EVLLKYNDNLQNINKVDFQDVSLLALE---------QVKKMPKEKYTHILIDESQDLTRV 252

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           + E ++ L               ++  + DE QSIY      P   L + R         
Sbjct: 253 ELEFLKVLY--------NKKPYSSITFITDEAQSIY------PHAWLIKNRSFASL--GY 296

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFS 279
                   L  ++R+T  I      +  
Sbjct: 297 DMTGKSNLLSKNYRTTTQIAQAAFSLID 324



 Score = 42.6 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 30/104 (28%)

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V+++T+H+ KGLE  VV +    S+V                      +   +++  
Sbjct: 417 EETVKLVTMHSVKGLEFKVVIIAGLNSKVIP--------------------LCPVKNEEE 456

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
           +  + +              +LLYVGMTRA ++L +  +   S 
Sbjct: 457 DMDMLEFR----------ERKLLYVGMTRAIEKLFLTSNGMPSK 490


>gi|188588307|ref|YP_001921188.1| LexA repressor [Clostridium botulinum E3 str. Alaska E43]
 gi|188498588|gb|ACD51724.1| LexA repressor [Clostridium botulinum E3 str. Alaska E43]
          Length = 513

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 25/148 (16%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            +   Y +  +    +DF+D+ +   +          ++    ++  HILIDE QD + +
Sbjct: 202 EVLLKYNDNLQNINKVDFQDVSLLALE---------QVKKMPKEKYTHILIDESQDLTRV 252

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           + E ++ L               ++  + DE QSIY      P   L + R         
Sbjct: 253 ELEFLKVLY--------NKKPYSSITFITDEAQSIY------PHAWLIKNRSFASL--GY 296

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFS 279
                   L  ++R+T  I      +  
Sbjct: 297 DMTGKSNLLSKNYRTTTQIAQAAFSLID 324



 Score = 42.6 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 30/104 (28%)

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              V+++T+H+ KGLE  VV +    S+V                      +   +++  
Sbjct: 417 EETVKLVTMHSVKGLEFKVVIIAGLNSKVIP--------------------LCPVKNEEE 456

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
           +  + +              +LLYVGMTRA ++L +  +   S 
Sbjct: 457 DMDMLEFR----------ERKLLYVGMTRAIEKLFLTSNGMPSK 490


>gi|317509559|ref|ZP_07967146.1| hypothetical protein HMPREF9336_03520 [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252145|gb|EFV11628.1| hypothetical protein HMPREF9336_03520 [Segniliparus rugosus ATCC
           BAA-974]
          Length = 196

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 54/192 (28%), Gaps = 18/192 (9%)

Query: 499 SPHDFFTLILGAKKGRQQFISR-FGNEVIDVLDEFLNFTLRN----EQNSYSSLQELISE 553
           +  D       A    +++            ++   +          +    +L +    
Sbjct: 8   TVEDVLWAAWSASGLEERWGDEILAEPDFAAVNALFSSARAQHVADSREIGPALAQFAER 67

Query: 554 LEQYPPTIKRA--HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
           +E+               + V + + H A G E  VV +      ++         +   
Sbjct: 68  IERERLPAPGRIADGGGSDAVTLSSAHAAAGREWDVVVVCGVQEGLWPGLSESNSLLGVD 127

Query: 612 LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                          + + + +D     +K    +  RLLY+  +RA DQL++       
Sbjct: 128 ELAA-----------AFDGVRADAKLDARKQVLAQERRLLYLACSRARDQLLLTAVEGEG 176

Query: 672 NEKKSNQRTWYD 683
           +   S     + 
Sbjct: 177 DLVPSRFLPLWW 188


>gi|283852070|ref|ZP_06369344.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
 gi|283572460|gb|EFC20446.1| conserved hypothetical protein [Desulfovibrio sp. FW1012B]
          Length = 989

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/348 (9%), Positives = 89/348 (25%), Gaps = 40/348 (11%)

Query: 559 PTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
                  +     +++M V   + L    VF++D            +  +  +L     +
Sbjct: 534 DERVPFEAEPLTGLQVMGVLETRLLSFRRVFVLDAVEDKLPGSAPYEPLLPDTLRRLLAL 593

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
           P    +       +       +     E   + Y                   + K    
Sbjct: 594 PDSRERD------LVAAYNIYRLFFGAEEITVFYRTGAP--------GAGLFEDSKPVRS 639

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
           R    ++   +  ++R+ ++                     + +        ++L     
Sbjct: 640 RYVEQLL---WEEEKRLGRVLTPGEPPVSLITLPLCPIPPADASLPRSPAVAERLDSYLS 696

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
             K   S    D      L            L  +  +      G ++H++L+  F    
Sbjct: 697 TKK--LSATFFDTYLACPLRFFYRYLSPLAPLAEVAEEGDRAAVGEVVHEVLREFFAASL 754

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS----------- 847
            +  +         A L+  +  ++           P     +     +           
Sbjct: 755 GRDIDAADINAAALADLYETRMRQSPACQAL----PPDGQLLLLRAGRTRLMHMAASMPR 810

Query: 848 ------EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
                 E  +   +    +  +++GR D++   ++ + I +YKT    
Sbjct: 811 TTPLALETELGASLETAGRTYLLAGRADRLDRREEGLVILDYKTGSVP 858


>gi|113476015|ref|YP_722076.1| hypothetical protein Tery_2383 [Trichodesmium erythraeum IMS101]
 gi|110167063|gb|ABG51603.1| TPR repeat [Trichodesmium erythraeum IMS101]
          Length = 1421

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 90/262 (34%), Gaps = 42/262 (16%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++  +K  + D  D++     LLK             ++ + I+ DEVQD + IQ
Sbjct: 377 IAEWYQKKLQKEKLYDEIDIVRQVLQLLKNNP---------RKKYDLIVCDEVQDLTEIQ 427

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            E++ +L                LF  GD  Q I       P          + +     
Sbjct: 428 LELLFNLVA----------PSGNLFFAGDSYQMI------SPSGFRW--ETLKNKFYPHR 469

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
           Q +    L  +FRS   ++ + +++  +       S  + +     S         QL  
Sbjct: 470 QVYQQ-TLKFNFRSVGSLVNLANQLLKLRSRYLAKSVSNYSISNSISG--------QLAR 520

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
            + + + +     +E+     D++     +          I   + +  +F+  + + ++
Sbjct: 521 LISADYQTLIGILKETSLYPGDAILVRKESDKE------KIRADLNSSFVFTIEEIKGLE 574

Query: 373 AKDILVLVRKRKDTPLITFLTR 394
              + ++   +    L + + R
Sbjct: 575 FDTVFIVDFFQPQAKLWSKVIR 596


>gi|254434433|ref|ZP_05047941.1| hypothetical protein NOC27_1364 [Nitrosococcus oceani AFC27]
 gi|207090766|gb|EDZ68037.1| hypothetical protein NOC27_1364 [Nitrosococcus oceani AFC27]
          Length = 904

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/548 (10%), Positives = 131/548 (23%), Gaps = 78/548 (14%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-----FSEDDIFKICT 458
              +    L D+  +   + +      +   +     L+SP        FS   +     
Sbjct: 286 YNLSLAQPLADNPLVHTALLILELSKGELSMVEMGAFLRSPFVGAAEQEFSHRALLDAYL 345

Query: 459 QRHETET------VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
           ++   E           I         +   + + + +              +    +  
Sbjct: 346 RKTREERVSLERLWKAAITAREEDANHRCPALGERLQQFKVEVDSLPARQPPSGWAQSFT 405

Query: 513 GRQQFI-----SRFGNEVIDVLDEFLNFTLRNEQNS--YSSLQELIS--ELEQYPPTIKR 563
              Q +         +E    +  +               SL++ ++  +          
Sbjct: 406 CWLQLLGWPGERPLDSEEYQAVSAWHKSIQSFSSLDRVVPSLKKNVAIGKFRHLLVETLF 465

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                   V++M V  A G +    +++     ++         +   L     +P    
Sbjct: 466 QPENPIVPVQVMGVLEAAGEQFDAAWMLGLHDGIWPTAPRPNPLLPIELQRHYRLPH--- 522

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                        +     T+    RLL          +I+       +          +
Sbjct: 523 ----------ASAERELAYTRVVTERLLASA-----PVVIVSHPRREGDRDLRPSPLIAE 567

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKL 743
           +        +        N I +   +        P      +      L+  Q      
Sbjct: 568 LASVLPERLQLASVESYVNEIQQTGRMETLVDAQGPPLEAGAQVGGGTGLLKAQAAC--- 624

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
                                 G   LE      ++ ++G++IH  LQ +    + + ++
Sbjct: 625 ------------PFRAFAEYRLGAKGLEEPSVGLESLDQGILIHVALQYL--WEKLQNQH 670

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRL---LENPMMTTAMS-------------CDSYS 847
            + S   +      A+  K  + + T +   +     T                      
Sbjct: 671 TLLSCSAEELHGLIAEAAKQAIATQTAVRPRIFTERFTAIEQERLEQLLLEWLERDKQRP 730

Query: 848 EVSV---SGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEI-EHIPYTHIA 902
             +V             + +  R D+I   +     I +YKT    P+      P     
Sbjct: 731 PFAVLHQERSQPLNLGGLSLDTRADRIDQLESGERVIVDYKTGRSNPRHWFGERPEE--P 788

Query: 903 QLSIYEKI 910
           QL +Y   
Sbjct: 789 QLPLYCIA 796


>gi|116052680|ref|YP_792996.1| hypothetical protein PA14_60080 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587901|gb|ABJ13916.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 643

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/584 (11%), Positives = 155/584 (26%), Gaps = 94/584 (16%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK------YLNAHYEEAK 141
           +I ++  +L+E+ +       +     N     +   +   +A        + + Y    
Sbjct: 114 DIRRRISELEEEFENYSSRVRQTTRDRNKADQERYVRSLEAVAGVRTFNYGVGSDY---- 169

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
               +L  ED++   + LL+ R +   +   +      + IDE QDT          + +
Sbjct: 170 -AKGILGHEDILQLADFLLQNRPLFRRV---VALSYPFVFIDESQDTFPG-------VVK 218

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            F   +        L   GD  QSI+     + +     +                I  P
Sbjct: 219 SFKEVEAQMQGKFCLGFFGDPMQSIFMRGAGDIQLEDHWRA---------------ITKP 263

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            +FR    IL V + V +  +   G+ +      R   +     G+ +++    + + ++
Sbjct: 264 ENFRCAKQILDVANAVRAQGD---GMEQVRGLHERVDGNLKLVEGSARMFVLPNTLNRTE 320

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              +  +W+S  ++  +  +   +A +I   +  M   + +   G    +  K       
Sbjct: 321 ALARVRAWSSATNN-DEGWTTPDIAVKILVIVHRM-AANRLGFGGIYSALNDK------- 371

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                     + + +++     V     F L                +   ++ + + +L
Sbjct: 372 ------TSDAMKQGMQDGTGWPVRPFLSFALP-----------IVAAVKAGNEFAAMSLL 414

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           +      +   +          E      +  A             I ++          
Sbjct: 415 REFSPRLAPAALTGRRAADVLRELHAAASRLVAM-----LDEAGTTIGDIALHLCDTGLF 469

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
           +F           +                             S    +          +
Sbjct: 470 EFDERYARVLGFVRDIADTAQEP---------EAADAVPAEGLSLDATMAKFFNCSAQEL 520

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                         T H  KG +   V +V                     +        
Sbjct: 521 WPYERYVSEGSPYATQHGVKGAQFERVMVV---------------MDEEESDYRTYNYER 565

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           +  S               ++T     RLLYV  TRA   L++ 
Sbjct: 566 VFASAEARAADRARALDGDENTWSRTLRLLYVCCTRAQRGLVLA 609


>gi|32481621|gb|AAP84135.1| pathogenesis-related protein [Pseudomonas aeruginosa PA14]
          Length = 643

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/584 (11%), Positives = 157/584 (26%), Gaps = 94/584 (16%)

Query: 88  EINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK------YLNAHYEEAK 141
           +I ++  +L+E+ +       +     N     +   +   +A        + + Y    
Sbjct: 114 DIRRRISELEEEFENYSSRVRQTTRDRNKADQERYVRSLEAVAGVRTFNYGVGSDY---- 169

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
               +L  ED++   + LL+ R +   +   +      + IDE QDT          + +
Sbjct: 170 -AKGILGHEDILQLADFLLQNRPLFRRV---VALSYPFVFIDESQDTFPG-------VVK 218

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            F   +        L   GD  QSI+     + +     +                I  P
Sbjct: 219 SFKEVEAQMQGKFCLGFFGDPMQSIFMRGAGDIQLEDHWRA---------------ITKP 263

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            +FR    IL V + V +  +   G+ +      R   +     G+ +++    + + ++
Sbjct: 264 ENFRCAKQILDVANAVRAQGD---GMEQVRGLHERVDGNLKLVEGSARMFVLPNTLNRTE 320

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              +  +W+S  ++  +  +   +A +I   +  M   + +   G    +  K       
Sbjct: 321 ALARVRAWSSATNN-DEGWTTPDIAVKILVIVHRM-AANRLGFGGIYSALNDK------- 371

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                     + + +++     V     F L                +   ++ + + +L
Sbjct: 372 ------TSDAMKQGMQDGTGWPVRPFLSFALP-----------IVAAVKAGNEFAAMSLL 414

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           +      +   +          E      +  A             I ++          
Sbjct: 415 REFSPRLAPAALTGRRAADVLRELHAAASRLVAM-----LDEAGTTIGDIALHLCDTGLF 469

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
           +F           +                             S    +          +
Sbjct: 470 EFDERYARVLGFVRDIADTAQEP---------EAADAVPAEGLSLDATMAKFFNCSAQEL 520

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                         T H  KG +   V +V    +   ++      +  S          
Sbjct: 521 WPYERYVSEGSPYATQHGVKGAQFERVMVV-MDEEESDYRTYNYERVFASAEARAADRAR 579

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                              ++T     RLLYV  TRA   L++ 
Sbjct: 580 ALDG--------------DENTWSRTLRLLYVCCTRAQRGLVLA 609


>gi|91974685|ref|YP_567344.1| hypothetical protein RPD_0203 [Rhodopseudomonas palustris BisB5]
 gi|91681141|gb|ABE37443.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas
           palustris BisB5]
          Length = 1049

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/364 (11%), Positives = 96/364 (26%), Gaps = 46/364 (12%)

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +   I R        +RI     A+  +   V L      V+         +   +  D
Sbjct: 607 AFSDRIVRRPELAGAALRIYGPLEARLTQHDRVILGGLVEGVWPPAPRIDPWLSRPMRHD 666

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            G+ +   +     +  + L+                       D++I+   +       
Sbjct: 667 LGLDLPERRIGLSAHDFAQLLGA---------------------DEVILTYANKVGGAPA 705

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS-THHPENTPLEREETIKQLM 734
              R  + +   +        K +  + ++  + +      T   +  P    E     +
Sbjct: 706 VVSRFLHRLEAVTGKARWSAVKARGQSYLDYAQALDRPEQVTPIAQPAPRPPREARPLKL 765

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
               I   L  P          L+           ++ +       +RG  IH+ L    
Sbjct: 766 SVTAIEDWLRDPYTIYAKFILGLSA----------IDPVDMPLSAADRGSAIHEALGEFT 815

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC----------D 844
            L   +  +       +  +   A    +             +                 
Sbjct: 816 ELFPDELPDDPAQVLREIGEKHFAPLMAHPEARALWWPRFARIAAWFGNWEQARRADGLR 875

Query: 845 SYSEVSVSGKINCPKK-DIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHIA 902
            ++E   S  I      + I+S R D+I   +  +  I +YKT +      + +      
Sbjct: 876 VFAERDGSLSIPLDGGRNFILSARADRIEHRADGSFAILDYKTGNPP--TGKQVRMGLSP 933

Query: 903 QLSI 906
           QL++
Sbjct: 934 QLTL 937


>gi|297588276|ref|ZP_06946919.1| probable ATP-dependent exonuclease [Finegoldia magna ATCC 53516]
 gi|297573649|gb|EFH92370.1| probable ATP-dependent exonuclease [Finegoldia magna ATCC 53516]
          Length = 892

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 70/611 (11%), Positives = 180/611 (29%), Gaps = 52/611 (8%)

Query: 326 QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN--GKKRVIQAKDILVLVRKR 383
           Q+       +  +      + +++    + ++  D +               + +L+ K 
Sbjct: 223 QDIGFDAIQNDEKSKPNKFIEKKVVKLTNEILEKDRLIDEVSKDSYTYDYNKMAILLEKD 282

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                   +   LK  + I V G+D     D+    D++ L     ++         L S
Sbjct: 283 SSKR---EIFNSLKL-HDIPVFGDDYISYRDYKFFLDIINLLD--NTKTLKQYIFSTLDS 336

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
               F   D         + E       +        ++  ++ + ++   + + S  + 
Sbjct: 337 CFLEFDLKDKVTFRNILSDFEFDSWEDLEKILKVNVNYETNLQILKDI--KSYYLSFIET 394

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
            + +L       Q             ++ L      ++  Y+ L +    +  Y   + +
Sbjct: 395 DSNVLSNLITLIQKKESDDTGFTLFSEKLLIILEDLDKT-YAELVKKSKNINSYLMDLIK 453

Query: 564 AHSANH-----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGI 618
               +      + +RI ++   +     V+++V+    V   K            +    
Sbjct: 454 NLKVDSTDYLVDGIRIYSLTDIRLSNYDVLYMVNMNDDVIPGKINYDFFNNEENIEFLQK 513

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
                 S   N   +            +   L Y   +    +LI+ K+  ++ + +   
Sbjct: 514 RGVDILSDGENRKRNIDRFIDAIKRANKKIYLSYNTESSIKSRLILDKNVKSNQKIRKIN 573

Query: 679 RTWYDMVYDSFHND-ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                 +     +     +K  L   +N+ E      +    E      +  +K+ +   
Sbjct: 574 TKNIKKIDTKQLHSVSAYEKYSLKQHLNRIENRISSKNIFDFEVDDKTTQYILKKELSST 633

Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP 797
           ++      P+K        L P                 ++  + G I+H  L+  + + 
Sbjct: 634 QLETYFECPMKFYFRYYLKLKPQI--------------KSRQLDIGTILHNTLEEFYGIN 679

Query: 798 EHKRKNFI-----------TSYC----TKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
             K ++ I                    K       KE +         L++ +++   +
Sbjct: 680 ISKIRDAIYGKCELDVSSLDELLKNSFEKFGLNTDIKENEFDYEKYLNKLKDFVISDIYN 739

Query: 843 CDSYSE----VSVSGKINCP-KKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHI 896
             + SE      +         ++    GRID++  +    I + +YK   +  ++ + +
Sbjct: 740 MKNESEKFYPYKLEEDFIVSLDENTKFIGRIDRVDRTDAGKIRLIDYKLSKNSFRKAKDL 799

Query: 897 PYTHIAQLSIY 907
                 Q +IY
Sbjct: 800 DKNKGFQFAIY 810


>gi|325972064|ref|YP_004248255.1| hypothetical protein SpiBuddy_2242 [Spirochaeta sp. Buddy]
 gi|324027302|gb|ADY14061.1| hypothetical protein SpiBuddy_2242 [Spirochaeta sp. Buddy]
          Length = 871

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/606 (11%), Positives = 173/606 (28%), Gaps = 67/606 (11%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
             + L+  + +     Y I +V  +  +  ++ + + L  +      Q    S   +L  
Sbjct: 241 AASNLLLPILQEEAVLYDIPLVIREGKLALEYPSGRFLNRIQEVYDDQFSLESLKSLLLD 300

Query: 444 PLFNFSEDDIFKICTQRHET-----ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
           P   + + D+     +R         ++ +  Q          +   + + + I      
Sbjct: 301 PGIPYKDRDLHHRFLRRAVDKSIVHGSLKQKDQFTEMLADRDLRSWYRSLKQSIIDIVTA 360

Query: 499 SPHDFFTLILGAKKGRQQFISRF-GNEVIDV----LDEFLNFTLRNEQNSYSSLQELISE 553
           S  +     L   +       ++ G E  DV    LD   +     ++ S +S   + S 
Sbjct: 361 SDIEMLRRKLNHFQDTYFTAEQWVGTEDEDVYSFCLDAIDHIKQAMQRCSIASYPHVFSY 420

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           L  Y  T           + +        L +  +F++    +  +      + +   + 
Sbjct: 421 LLSYLQTKLYVPQQRKGGIAVYAWPQVAPLIADHLFVLGLDQESSATIERPLLFLPSQIG 480

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
           ++    I   ++  +   + D               +     TR  +  ++   +    +
Sbjct: 481 EEHRKEIDTTRANLQAVSLGDG-------------NVTLSCHTRRYEGELLPPSAFLEED 527

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
                    ++  D +  +  + K   +      E     + T         R++     
Sbjct: 528 ALLYHGQSPNLCEDPYLEELALYKQGPSGPAISLESQRRFFLTARKTALLERRDDYT--- 584

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLL-------------SDNQTF 780
                +        + D     +L+P+ ID   +     L                    
Sbjct: 585 RYPIPLDLVKKLKEERDGKALLVLSPTKIDLFDRCPYAWLAHYLYGVTKETYDVERVDHL 644

Query: 781 NRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE-----------------YKN 823
             G ++H + Q  F+         +  Y +    L+ +                      
Sbjct: 645 MIGNLLHLVYQRFFSQIVDFDPALLEQYRSLLTSLFDSTLTDVYGSEGPTPSIRSWIIAE 704

Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQIS----ISQQNIF 879
               +  +LE        S      +    +++     + + GRID+I        ++  
Sbjct: 705 YRQKVLCILEQE--AKLFSHT--RSILFEQELSFSYDSLFLHGRIDRIINLDPPEGKSYA 760

Query: 880 IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFII-PQN 938
           + +YK      + I+    ++  QL +Y  ++K +    +       V E +   +   +
Sbjct: 761 VIDYKKGEAPMKSIKEKLSSY--QLPLYRALVKHALGGAASHAAYYSVKEGRYRSLWTDD 818

Query: 939 KLNKAF 944
              +A 
Sbjct: 819 GSEEAL 824


>gi|188586471|ref|YP_001918016.1| ATP-dependent nuclease subunit B [Natranaerobius thermophilus
            JW/NM-WN-LF]
 gi|251764608|sp|B2A611|ADDB_NATTJ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|179351158|gb|ACB85428.1| ATP-dependent nuclease subunit B [Natranaerobius thermophilus
            JW/NM-WN-LF]
          Length = 1186

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/538 (12%), Positives = 156/538 (28%), Gaps = 114/538 (21%)

Query: 459  QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
             + E+ +     Q+     +   + +  Y+ ELI   Q    +      L A++ +    
Sbjct: 498  NKSESLSAQFKNQEAEEDNLLSVREISTYLWELIEQLQIE--YQLEEWSLEAEERKDFVE 555

Query: 519  SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK-RAHSANHNEVRIMTV 577
             +  N++ D + + L+  +        +L E +  +E     IK     A  ++V + T 
Sbjct: 556  MQLHNQLWDTVIDLLDQMVTFLGEQKVTLSEYLQIIESGLANIKLGLLPATLDQVLVGTA 615

Query: 578  HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
              ++  E  V+F+      ++  K      I                  +   +  +   
Sbjct: 616  DRSRYHEIKVLFMAGVSDGLYPAKIDDDGIIDDRERITLRQHDVEFAPTTEQKLYQEQY- 674

Query: 638  HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                        L+Y  +T+ S +L +   +  S  +  +  T    + + F    +  +
Sbjct: 675  ------------LIYNVLTQPSQKLYLSYPAADSEGRTMSPSTIISDIQEMFPELFQEYQ 722

Query: 698  IKLTNSINKDEWIAYEWSTH------------HPENTPLEREETIKQLMDEQKIPKKLFS 745
                 +         +                HPE    ++++ +  L++E        +
Sbjct: 723  NDGPENDEDFRQYIIDGKKAVSNLIKLINKVGHPEKLAEDKQQLLAYLINEHPDL-FYST 781

Query: 746  PIKNDINEPYILNP------------------STIDTKGKTNLESLLS-----------D 776
            P    ++    L+P                  S +++  +                    
Sbjct: 782  PEIKALDYKKSLSPLTQEVIDKLYPNKIATSVSGLESFCQCPFRHFAEQNLRLKEREYFR 841

Query: 777  NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
             +  + GL  H  L++ +   +     +              +E + L+  I  +L   +
Sbjct: 842  LEPASLGLFYHAGLKLFWDKLQENNLTW---------HKLKTEEREALVSEIVEVLSERL 892

Query: 837  MTTAMSCDSY--------------------------------SEVSV---------SGKI 855
                +                                     SE+             ++
Sbjct: 893  KNRILLASERYKYFKKKLHELLSRAVEVLSWYSDDKGFYPVGSEIGFGKDEPLSTLELEL 952

Query: 856  N-CPKKDIIISGRIDQIS--ISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
               P K + + GRID+I       +++  + +YK       E+  + Y    QL+ Y 
Sbjct: 953  PSFPNKKVQLKGRIDRIDTGKKDGDLYLRVIDYK-GKSKNLELRDLYYGLDLQLAAYM 1009


>gi|322411490|gb|EFY02398.1| ATP-dependent nuclease subunit B [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 1074

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 79/711 (11%), Positives = 195/711 (27%), Gaps = 104/711 (14%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                ++     L ++    I   +       +               + KD+LVL+   
Sbjct: 276 EAHHDFSQVDWQLEEKDKEDIHIWQSHQQKEEIEHVAKAIREKLYEGYRYKDMLVLL--- 332

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            D          + + ++I         +T H  ++ + +L R           + +LKS
Sbjct: 333 GDVDAYQLQIGPIFDKFEIPYYLGKAESMTAHPLVQFIESLERSQRYNWRREDILNLLKS 392

Query: 444 PLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            LF  F++ D+ +        +              S   + ++ ++E+   A F     
Sbjct: 393 GLFGSFADSDVDRFEEYLQFADIKGFTKFSRPFTINSSRHYPLELLNEIRE-AIFSPLQA 451

Query: 503 FF--TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS-------------- 546
            F     LG     +        ++ + +       L  E+N                  
Sbjct: 452 LFKSQKQLGTSLLDKLMTFFKDVQLAENMKNLGQNELETEKNEEVWKTFTDVLTSFYQTF 511

Query: 547 ------LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 L + +S ++    +          + V I +    +    P V+ +      F 
Sbjct: 512 GQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQPHSKPFVYAIGLTQSHFP 571

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +  +   +               Q     +I         +   +    LL        
Sbjct: 572 KQVKETGLLSDQERARINEITDSFQHFDIGSI------ENSRKNHQTALSLLNAAT---- 621

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L++   +  +           +++       ++        + +   + A        
Sbjct: 622 QELVLSVPALVNEFSDDLSPYLKELMSFGLPLIDKGSNRFSYAASDIGNYKALLSRLVDL 681

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFS---------PIKNDINEPYILNPSTIDTKGKTNL 770
               +  + T +         + L           P+ +D      L    I+ +  ++ 
Sbjct: 682 NREAIVADMTEQDKTFWTVALRYLRRQLRHQQVTLPMLDDHLVTKPLASEVIEARFPSDR 741

Query: 771 ESLLSD----------------------------NQTFNRGLIIHKLLQVIFTLPEHKRK 802
              LS                                   G  +H++ +++  + +H   
Sbjct: 742 PLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELV--MTDHTAA 799

Query: 803 NFITSYCTKNAKLWPAKEYKNLL-LSITRLLENPMMTTAMSCD------------SYSEV 849
           +F +       +    KE++ +   S        ++                   S  E 
Sbjct: 800 SFDSKLAQAIHQTNQEKEFQYIYQDSAENRFSLDLLEDIAKSTASILRLNQNMTVSRQEE 859

Query: 850 SVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
             + ++      I++ G ID+I   S  ++ I +YK+  +   +I         QL  Y 
Sbjct: 860 PFALQVT---DQIVVHGIIDRIDQLSDGSLGIVDYKSSANQF-DIGKFYNGLSPQLVTYL 915

Query: 909 KILKDSYP----NKSLVCLLIYVSEPKVF-----IIPQNKLNKAFAEISTK 950
             L+  +           + +++ EPK+       +    +   + E++ K
Sbjct: 916 AALQQQFGPDDLGHLFGAMYLHLQEPKLDLATVKALDDKLVESIYKELTYK 966


>gi|194014167|ref|ZP_03052784.1| ATP-dependent nuclease subunit B [Bacillus pumilus ATCC 7061]
 gi|194013193|gb|EDW22758.1| ATP-dependent nuclease subunit B [Bacillus pumilus ATCC 7061]
          Length = 1169

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/704 (9%), Positives = 195/704 (27%), Gaps = 156/704 (22%)

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
              ++ + ++       +A  I +++           + ++ +DI ++ R          
Sbjct: 310 PHLTVSKSANKRAEIEGVARDILDLVRE---------KGLRLRDISIVAR---HVDDYKD 357

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF---NF 448
             + +  DY I    +    +  H  I+ + +    I       +    +K+        
Sbjct: 358 TLKEVFRDYDIPFFIDGNESMQYHPLIELIRSSLDVIKGNWRYEAVFRCVKTEFLFPLEI 417

Query: 449 SE-------DDIFKICTQRHETETVYEYIQKFANCGISKF-------------QHVIKYI 488
           ++       D +   C         +    +F                     + ++  +
Sbjct: 418 TKNKAREQADQLENYCIAYGVKGERWTNGSRFHYRRFQSLDEDFGQTDQEIEMEQMLNDV 477

Query: 489 HELIH----------------IAQFCSPHDFFTLI-----LGAKKGRQQFISRFGN---- 523
            E I                      + + F   I     L   +   +   R       
Sbjct: 478 KEWIASPLYQLQKRLKKAQKVRDMVEAVYVFLEEIQVPDKLEKARLEAEEAGRLAEAMQH 537

Query: 524 -EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAK 581
            +V D + + ++  +    +   S       ++    ++K A      ++V I ++  ++
Sbjct: 538 GQVWDAVIQLMDEFVDMLGDEELSFPLFQQMIDTGLASLKFALIPPSLDQVFIGSMDLSR 597

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
             +    F++     V   +                  +     +      ++L +  K+
Sbjct: 598 MYQVKCTFIIGVNDGVIPARPS------------DESVLSEDDREWLKRAGAELAETGKE 645

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              +E   L+Y  ++  S  L +   ++ +  +     T      +   N ++   +   
Sbjct: 646 RLLDEQF-LIYQALSSPSHHLYLSYAASDAEGRSLLPSTLIKYCQELMPNHQQALYVLDP 704

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD----EQKIPKKLFSPIKNDIN----- 752
             +  DE + +  + H   +  + + +              +   L +    D++     
Sbjct: 705 EQLEDDEQLKFVANEHVSLSYTISQLQQWLNQYPISGVWWSVYNYLMTSPHRDVSKNIMS 764

Query: 753 ------EPYILNP---------------STIDTKGKTNLESLLS-----------DNQTF 780
                     L P               S ++           S             +  
Sbjct: 765 SLFFTNRAKPLKPNVTKELYGDHIQGSVSRMEKFNACAFSHFASHGLKLKDRQFYKLEAP 824

Query: 781 NRGLIIHKLLQVIFTLPEHKRKN---------------FITSYC--TKNAKLWPAKEYKN 823
           + G + H  L+ I      ++K+                I       +   L  +  +  
Sbjct: 825 DIGQLFHSALKHISDTLVEQKKDWKNLTKEDCVTYSRHAIEQLAPRLQKEILLSSNRHAY 884

Query: 824 LLLSITRLLENPMMTTAMSCDSY----SEVSVSGKINCPKK------------DIIISGR 867
           +   + ++L    +++ +S  +     S V +                      + + GR
Sbjct: 885 IKEKLQKIL--IRVSSILSEHAKLSGFSPVGLELGFGGQGPLPPFTFQLKNGCTMELVGR 942

Query: 868 IDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           ID++  ++ +    + I +YK+      ++  + Y    Q+  Y
Sbjct: 943 IDRVDKAEGSKGLLLRIVDYKSS-EKGLDLAEVYYGLALQMLTY 985


>gi|311033031|ref|ZP_07711121.1| ATP-dependent DNA helicase replicase [Bacillus sp. m3-13]
          Length = 776

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 110/356 (30%), Gaps = 71/356 (19%)

Query: 45  TILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ 104
           T  + A    Q      +  R   L  + + +  T QK+ + +   ++  +L    +  +
Sbjct: 369 TAQQIADRFYQHETDLRLSNRLEKLKDWLIKELKTIQKSEVDKPWVQEEMELLSNEEYHE 428

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH-----YEEAKKKNCVLDFEDL------- 152
                 + +    +              L  H       +  +    +DF+ L       
Sbjct: 429 ARVFLAKKKGFEREEVADYEVDPRALAKLIVHKKMKPLRQRVRSYRFIDFKALYEQIFAE 488

Query: 153 ------------------------IINTNDLLKKRDVSAWIR-------YKIDQEINHIL 181
                                        D L   D + ++        ++I+  I HI+
Sbjct: 489 PASIGQWLDGEPPEEWPAICQGTIEALAEDKLMYEDATPFLLLKELILGFQINSSIKHIV 548

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           +DE QD S  Q+E ++ L                +  +GD  Q+I++ H +E       +
Sbjct: 549 VDEAQDYSPFQFEFMKRLF-----------PAARMTVLGDFNQAIFA-HASEAVNFDVLE 596

Query: 242 RINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            +         +K  II +  S+RST  I+    ++    +       D    ++     
Sbjct: 597 GLYGA------EKTEIINITRSYRSTRPIIEFTRRLVPNGDKIIPFDRDGEEPVK----- 645

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA-RRIAYTISNM 356
                 V  ++ + +   ++    +         + + S  S  A   ++  I N+
Sbjct: 646 ----TEVDDFDSLHAGITARVEELKGRGYQSIAIICKSSEESGRAFEALSPEIKNL 697


>gi|300854617|ref|YP_003779601.1| putative helicase [Clostridium ljungdahlii DSM 13528]
 gi|300434732|gb|ADK14499.1| predicted helicase [Clostridium ljungdahlii DSM 13528]
          Length = 744

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 29/143 (20%)

Query: 137 YEEAKKKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
           Y     K   L++ED   ++     L+    ++         I +++IDE QD + +Q+E
Sbjct: 485 YTLENLKAGKLNYEDQPPLLYLKGALEGIPKTSE--------IKYVIIDEAQDYTPLQYE 536

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +   L                +  +GD  QSI  F             I  K  T     
Sbjct: 537 IFYQLF-----------KHANMTILGDLNQSINPFM--NVGDYNNISHIFPKDNT----- 578

Query: 255 FSIIELPLSFRSTADILTVVDKV 277
             II L  S+RST +I     ++
Sbjct: 579 -CIINLTKSYRSTMEITKFSRRL 600


>gi|251798283|ref|YP_003013014.1| hypothetical protein Pjdr2_4306 [Paenibacillus sp. JDR-2]
 gi|247545909|gb|ACT02928.1| conserved hypothetical protein [Paenibacillus sp. JDR-2]
          Length = 576

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           + K K  +L   D+I  T  +L         R         + IDE QDT       + +
Sbjct: 143 KVKDKQIMLGHNDVISLTILMLDD----LKFRKIFINRYPILFIDEYQDTDK---HFVEA 195

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           LT  F      + +   L   GD  Q IY     + +                 Q    I
Sbjct: 196 LTTHFL----DNENRLLLGLFGDPWQKIYPSGCGKVE----------------HQNLEEI 235

Query: 259 ELPLSFRSTADILTVVDKV 277
               +FRS+  I+  ++++
Sbjct: 236 GKRANFRSSTKIVESLNRI 254


>gi|157691775|ref|YP_001486237.1| ATP-dependent deoxyribonuclease subunit B [Bacillus pumilus
           SAFR-032]
 gi|157680533|gb|ABV61677.1| ATP-dependent deoxyribonuclease subunit B [Bacillus pumilus
           SAFR-032]
          Length = 1173

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/704 (9%), Positives = 191/704 (27%), Gaps = 156/704 (22%)

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
              ++ + +S       +A  I +++           + ++ +DI V+ R          
Sbjct: 314 PHLTVSKSASKRAEIEGVARDILDLVRE---------KGLRLRDISVVAR---HVDDYKD 361

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK--------- 442
             + +  DY I    +    +  H  I+ + +    I       +    +K         
Sbjct: 362 TLKEVFRDYDIPFFIDGNESMQYHPLIELIRSSLDVIKGNWRYEAVFRCVKTEFLFPLEI 421

Query: 443 -----------------------------SPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
                                        S         + +   Q  +   + + +   
Sbjct: 422 TKNKAREQADQLENYCIAYGVKGERWTNGSRFHYRRFQSLDEDFRQTDQEIEMEQMLNDV 481

Query: 474 ANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLI-----LGAKKGRQQFISRFGN---- 523
                     + K +           + + F   I     L   +   +   R       
Sbjct: 482 KEWITPPLYQLQKRLKNAQKVRDMVEAVYVFLEEIQVPDKLEKARLEAEEAGRLAEAMQH 541

Query: 524 -EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAK 581
            +V D + + ++  +    +   S       ++    ++K A      ++V I ++  ++
Sbjct: 542 GQVWDAVIQLMDEFVDMLGDEELSFPLFQQMIDTGLASLKFALIPPSLDQVFIGSMDLSR 601

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
             +   +F++     V   +                  +     +      ++L +  K+
Sbjct: 602 MYQVKCMFIIGVNDGVIPARPS------------DESVLSEDDREWLKRAGAELAETGKE 649

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              +E   L+Y  ++  S  L +   ++ +  +            +   N ++   +   
Sbjct: 650 RLLDEQF-LIYQALSSPSHHLYLSYAASDAEGRSLLPSPLIKYCQELMPNHQQALYVLDP 708

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD----EQKIPKKLFSPIKNDIN----- 752
             +  DE + +  + H   +  + + +              +   L +    D++     
Sbjct: 709 ELLEDDEQLKFVANEHVSLSYTISQLQQWLNQYPISGVWWSVYNYLMTSPNRDVSKNIMS 768

Query: 753 ------EPYILNP---------------STIDTKGKTNLESLLS-----------DNQTF 780
                     L P               S ++           S             +  
Sbjct: 769 SLFFTNRAKPLKPNVTKELYGDHIQGSVSRMEKFNACAFSHFASHGLKLKDRQFYKLEAP 828

Query: 781 NRGLIIHKLLQVIFTLPEHKRKN---------------FITSYC--TKNAKLWPAKEYKN 823
           + G + H  L+ I      ++K+                I       +   L  +  +  
Sbjct: 829 DIGQLFHSALKHISDTLVEQKKDWKNLTKEDCVTYSRHAIEQLAPRLQKEILLSSNRHAY 888

Query: 824 LLLSITRLLENPMMTTAMSCDSY----SEVSVSGKINCPKK------------DIIISGR 867
           +   + ++L    +++ +S  +     S V +                      + + GR
Sbjct: 889 IKEKLQKIL--IRVSSILSEHAKVSGFSPVGLELGFGGQGPLPPFTFQLKNGCTMELVGR 946

Query: 868 IDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           ID++  ++ +    + I +YK+      ++  + Y    Q+  Y
Sbjct: 947 IDRVDKAEGSKGLFLRIVDYKSS-EKGLDLAEVYYGLALQMLTY 989


>gi|70732032|ref|YP_261781.1| hypothetical protein PFL_4698 [Pseudomonas fluorescens Pf-5]
 gi|68346331|gb|AAY93937.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 486

 Score = 63.8 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 24/151 (15%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q  + +L+DE QD + +  +++R                     VGD  Q +Y F GA
Sbjct: 187 LSQRFDSVLLDEGQDINPVIADIVRL-------------QRIQKILVGDPHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E               ++         L  S+R    I  V + + S     + L     
Sbjct: 234 EDTLD-----------SDWMAGAEEHYLTQSWRFGPAIAHVANIILSYKGETRKLQGLGA 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            T+  ++          +   V+   ++   
Sbjct: 283 QTLVKKALPEDLPHRAFIHRTVIGVIENALQ 313


>gi|111220176|ref|YP_710970.1| putative DNA helicase [Frankia alni ACN14a]
 gi|111147708|emb|CAJ59366.1| Putative DNA helicase [Frankia alni ACN14a]
          Length = 424

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 22/144 (15%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             H+++DE QD    QW ++R++             P  LF VGD  Q IY    A    
Sbjct: 169 FPHVVVDEAQDLHPAQWRLLRAVV---------PDGPNDLFIVGDAHQRIYDHRVALATM 219

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +  +                  L L++R++ +ILT    +                   
Sbjct: 220 GINVR-------------GRSHRLRLNYRTSEEILTWAIALLEGQVIDDLDGGVDDLAGY 266

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDS 320
             + R  +  T+  +    ++ D 
Sbjct: 267 RSAFRGTRPPTMHGYPTPAAELDG 290


>gi|294631278|ref|ZP_06709838.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
 gi|292834611|gb|EFF92960.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
          Length = 278

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 75/263 (28%), Gaps = 43/263 (16%)

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           R+MT H +KGL+  +V +      ++     +   +        G+   +          
Sbjct: 2   RLMTAHRSKGLQWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPG------- 54

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-------- 684
                    +   E  RL YV +TRA ++L++      +++     R   ++        
Sbjct: 55  ---------ALLAEERRLFYVAVTRARERLVVTAVKAPADDGDQPSRFLTELGVEPQDVT 105

Query: 685 --VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                       V +++ T           E +           ++  + L+      + 
Sbjct: 106 GRPRRPLSVAALVAELRATTVDPAASDALREAAARRLARLAALADDEGRPLVPAAHPDRW 165

Query: 743 L-------FSPIKNDINEPYILNPSTIDT-KGKTNLESLLSDN--------QTFNRGLII 786
                         D ++P +L+ S +D       L+  L                G ++
Sbjct: 166 WGLAETTASKVPLRDRDQPVVLSGSALDQLANTCALQWFLGREVKADAPASAAQGFGNVV 225

Query: 787 HKLL-QVIFTLPEHKRKNFITSY 808
           H L  +V            +   
Sbjct: 226 HVLADEVASGRTPADLAVLMERL 248


>gi|251764596|sp|A8FBR0|ADDB_BACP2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
          Length = 1169

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/704 (9%), Positives = 191/704 (27%), Gaps = 156/704 (22%)

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITF 391
              ++ + +S       +A  I +++           + ++ +DI V+ R          
Sbjct: 310 PHLTVSKSASKRAEIEGVARDILDLVRE---------KGLRLRDISVVAR---HVDDYKD 357

Query: 392 LTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK--------- 442
             + +  DY I    +    +  H  I+ + +    I       +    +K         
Sbjct: 358 TLKEVFRDYDIPFFIDGNESMQYHPLIELIRSSLDVIKGNWRYEAVFRCVKTEFLFPLEI 417

Query: 443 -----------------------------SPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
                                        S         + +   Q  +   + + +   
Sbjct: 418 TKNKAREQADQLENYCIAYGVKGERWTNGSRFHYRRFQSLDEDFRQTDQEIEMEQMLNDV 477

Query: 474 ANCGISKFQHVIKYIHELIH-IAQFCSPHDFFTLI-----LGAKKGRQQFISRFGN---- 523
                     + K +           + + F   I     L   +   +   R       
Sbjct: 478 KEWITPPLYQLQKRLKNAQKVRDMVEAVYVFLEEIQVPDKLEKARLEAEEAGRLAEAMQH 537

Query: 524 -EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAK 581
            +V D + + ++  +    +   S       ++    ++K A      ++V I ++  ++
Sbjct: 538 GQVWDAVIQLMDEFVDMLGDEELSFPLFQQMIDTGLASLKFALIPPSLDQVFIGSMDLSR 597

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
             +   +F++     V   +                  +     +      ++L +  K+
Sbjct: 598 MYQVKCMFIIGVNDGVIPARPS------------DESVLSEDDREWLKRAGAELAETGKE 645

Query: 642 STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
              +E   L+Y  ++  S  L +   ++ +  +            +   N ++   +   
Sbjct: 646 RLLDEQF-LIYQALSSPSHHLYLSYAASDAEGRSLLPSPLIKYCQELMPNHQQALYVLDP 704

Query: 702 NSINKDEWIAYEWSTHHPENTPLEREETIKQLMD----EQKIPKKLFSPIKNDIN----- 752
             +  DE + +  + H   +  + + +              +   L +    D++     
Sbjct: 705 ELLEDDEQLKFVANEHVSLSYTISQLQQWLNQYPISGVWWSVYNYLMTSPNRDVSKNIMS 764

Query: 753 ------EPYILNP---------------STIDTKGKTNLESLLS-----------DNQTF 780
                     L P               S ++           S             +  
Sbjct: 765 SLFFTNRAKPLKPNVTKELYGDHIQGSVSRMEKFNACAFSHFASHGLKLKDRQFYKLEAP 824

Query: 781 NRGLIIHKLLQVIFTLPEHKRKN---------------FITSYC--TKNAKLWPAKEYKN 823
           + G + H  L+ I      ++K+                I       +   L  +  +  
Sbjct: 825 DIGQLFHSALKHISDTLVEQKKDWKNLTKEDCVTYSRHAIEQLAPRLQKEILLSSNRHAY 884

Query: 824 LLLSITRLLENPMMTTAMSCDSY----SEVSVSGKINCPKK------------DIIISGR 867
           +   + ++L    +++ +S  +     S V +                      + + GR
Sbjct: 885 IKEKLQKIL--IRVSSILSEHAKVSGFSPVGLELGFGGQGPLPPFTFQLKNGCTMELVGR 942

Query: 868 IDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           ID++  ++ +    + I +YK+      ++  + Y    Q+  Y
Sbjct: 943 IDRVDKAEGSKGLFLRIVDYKSS-EKGLDLAEVYYGLALQMLTY 985


>gi|229825743|ref|ZP_04451812.1| hypothetical protein GCWU000182_01106 [Abiotrophia defectiva ATCC
           49176]
 gi|229790306|gb|EEP26420.1| hypothetical protein GCWU000182_01106 [Abiotrophia defectiva ATCC
           49176]
          Length = 1133

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/686 (8%), Positives = 169/686 (24%), Gaps = 128/686 (18%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            +Q        +  + S    + +     +  +I    I S  +   ++ +DI V++   
Sbjct: 286 ERQIFRYPVKKTDSENSVRINVCKNPREEVERLIPD--ILSLVRDEGLRYRDIAVVL--- 340

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            D      +     +   +    + +  + D+  ++ + A    +       + +  L+S
Sbjct: 341 GDMEEYGEMVVDTLSSKGVPCFLDSKKTIADNPFVEYIKASLLVVEENFSYDAVMRYLRS 400

Query: 444 PL-----------------FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
                                      ++    + E        +      + +F+ +  
Sbjct: 401 GFANVDVYEVDIFENYILRRGIKGFRRYQTSFIKDEASEEESISEGLRVTLVDEFKPLYD 460

Query: 487 YIHELIHIAQFCSPHDFFTLILGAKKGRQQF--------------ISRFGNEVIDVLDEF 532
            +      A        +  +  A    ++                +R       ++   
Sbjct: 461 ILKSKKSKA-EDFVKALYEFV-SASGSEERLMKLSADFEEKGKMIAAREYAGCYRIVMSV 518

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLV 591
                    +   S++E  S LE      K        +++ I  V   +  +  V+F +
Sbjct: 519 FEKMYELLGDEKLSIEEFRSILESGFSEGKAGFIPPGLDQIVIGDVERTRLKDIKVLFCL 578

Query: 592 DTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLL 651
                        +  I  +  +                +     +   +         +
Sbjct: 579 GFNEGKVPKSVGARGIITDTEKEKLAG--------MNVELAPTAKERAFREQFY-----I 625

Query: 652 YVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIA 711
           Y+  ++ +++L +   S+    K     +  + +   F  +   +  +  + IN+     
Sbjct: 626 YMLFSKPTERLYVSYSSSNMEGKPIKPSSVINRLRAVFKQEIVSEPTEEVSLINEIRKDG 685

Query: 712 YEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP------------------IKNDINE 753
                         ++ T+  L+                              I  ++  
Sbjct: 686 GMELILSAIKKRDLKDSTVINLIKYYNCHYDDRYNKIIEGTVSKAHGNSLEKYIATELYG 745

Query: 754 PYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
               + + ++                  E    + +  + G I+H++L+        K  
Sbjct: 746 ELKGSVTRLELFSSCAYAHFIKHGLRLKERKEFELKPMDIGNILHEILERFAKKVVEK-G 804

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSITRLLENP--------MMTTAMSCDSY-------- 846
               S   +  +   A+           +             +                 
Sbjct: 805 ESFNSISEETREAIQAESIAEAFNYGDDIFNASFRNNYRLTRLKRITDRAVRTVLTQIKS 864

Query: 847 ---SEVSVSGKINCPKKDIIISGRIDQ-------ISISQQNIF---------------IF 881
              + V+   +           GRID+              +                + 
Sbjct: 865 GLFTPVAFEEEFVTKG----FKGRIDRIDSVLSDYLPDGTRLIDSKEFADFNKVRYMRVI 920

Query: 882 EYKTHHHVPQEIEHIPYTHIAQLSIY 907
           +YK+ + V  +++   Y    QL  Y
Sbjct: 921 DYKSGNKV-LDLDRAYYGLDLQLFTY 945


>gi|315122047|ref|YP_004062536.1| double-strand break repair protein AddB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495449|gb|ADR52048.1| double-strand break repair protein AddB [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 1050

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 76/585 (12%), Positives = 156/585 (26%), Gaps = 91/585 (15%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL- 445
             +    +     + I V  +    L+  L    L +L   +    D ++   ++K PL 
Sbjct: 398 RNLARRVKLELIRFGIDVDISAGIPLSTTLQGSILTSLLNAVFKTNDPMALAVLIKHPLA 457

Query: 446 -FNFSEDDIFKICTQRH--------------------ETETVYEYIQKFANCGISKFQHV 484
            F F E  +FK                            +   +   K+     S+    
Sbjct: 458 TFGFPEKHLFKAKNALELIALRGNRNPCDIIDLKSLVINKINEQKNDKYIPRWQSRLSEE 517

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDV------LDEFLNFTLR 538
            K +   +      S        +          +    E+         LDE       
Sbjct: 518 DKKLSLWLADHIVKSIAPLAVYKMNENSIGDSLSTPDWTELTAACLQNVCLDENKKLPSL 577

Query: 539 NEQNSYSSLQELI---------------SELE----QYPPTIKRAHSANHNEVRIMTVHT 579
                  +L  L                  ++           +      + + I+    
Sbjct: 578 WLAEEGKALSALFSKIIEAGPCIKANAIEWIDIITALIAGETVKPKIEKSSTIFILGTLE 637

Query: 580 AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
           ++ L    + L      ++     K   +   +  D G+           +         
Sbjct: 638 SRLLNFDTLILGGLNEGIWPKYTPKNPFLSRMMQSDLGLETAEKYIGQAAHDFEMASGTR 697

Query: 640 KK--STQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
               +   + N +  V  +R   +L++   +  SN+ K     + D              
Sbjct: 698 HLIYTRSLQENNIPTVA-SRWLQRLLVFGGNAFSNDLKKKGERYLDWAR----------- 745

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL 757
            +L +S  K                P    ET  +     +I K +  P      +   L
Sbjct: 746 -RLDDSTKKQIICKRPR--------PFPPLETQPKTYSFSEIKKLMSDPYAIYAQKILRL 796

Query: 758 NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-----QVIFTLPEHKRKNFITSYCTKN 812
           +           +    +D    +RG++ HK++     + I        +       +  
Sbjct: 797 DF----------MPRFKNDPNPKDRGILFHKIVTGLIEEKINKNTPEITRRMKDIIDSCF 846

Query: 813 AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE---VSVSGKINCPKKDIIISGRID 869
            K         +   +   +  P +          E   V+V  K+      I ++G  D
Sbjct: 847 EKENLPPHIDIIWRYLFHKIALPFLEYEEQRQPLIEKTIVNVPAKMKIDSIGIHLTGIAD 906

Query: 870 QISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           +I I +     I +YKT ++  ++I         QLS+    LK 
Sbjct: 907 RIDILKSGYADIIDYKTGNNPTKKIAQ--NLIDPQLSLEAVALKA 949


>gi|222033744|emb|CAP76485.1| hypothetical protein LF82_318 [Escherichia coli LF82]
 gi|312946598|gb|ADR27425.1| hypothetical protein NRG857_10050 [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324008910|gb|EGB78129.1| hypothetical protein HMPREF9532_01332 [Escherichia coli MS 57-2]
          Length = 577

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 27/127 (21%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +D++  T  L++        R  I +    IL+DE QDT       I ++   F      
Sbjct: 153 DDVLSLTISLMEHE----KFRRVIAERFPIILVDEYQDTDK---NWIEAIKRHFL----G 201

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
            +        GD  Q IY     + +                 Q    I    +FRS   
Sbjct: 202 QARAPLFGFFGDHWQKIYGGGCGKLE----------------HQDVVEIGKEANFRSDKI 245

Query: 270 ILTVVDK 276
           I+  +++
Sbjct: 246 IVDALNR 252


>gi|315929647|gb|EFV08827.1| hypothetical protein CSS_1184 [Campylobacter jejuni subsp. jejuni
           305]
          Length = 283

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 55/239 (23%)

Query: 460 RHETETVYEYIQKFANCGISKF-QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518
           R + E+ ++         I+      ++ I+  +  A           ++      ++  
Sbjct: 70  RFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTLVNLICENSFYREIC 129

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQ---------------NSYSSLQELISELEQYPPTIKR 563
                +        ++   ++E                 +YS + +  + L      +  
Sbjct: 130 EELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDIYKYYNFLTLGASEM-- 187

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
              ++   V +++VH +KGLE  +VF++D     F ++ +  M                 
Sbjct: 188 ---SSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGS-------------- 230

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                EE  RL YV +TRA + L +       N+K S   + +
Sbjct: 231 --------------------LEEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRF 269


>gi|323126210|gb|ADX30675.1| gp72 [Mycobacterium phage Wonder]
          Length = 271

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 68/252 (26%), Gaps = 63/252 (25%)

Query: 752 NEPYILNPSTIDTKGKTNLESLLSD-----NQTFNR---GLIIHKLLQVIFTLPEHKRKN 803
           +     + S +    +      L+       +       G  +H +L+            
Sbjct: 3   DTRKHRSVSQLKQYERCPYSYKLARVDKVWQRPAAWLPQGSAVHTVLEEYRRRELDGDPM 62

Query: 804 FITS------------------------YCTKNAKLWPAKEYKNL----LLSITRLLE-- 833
            +                          +  ++ +   A + +      L  I +     
Sbjct: 63  SLEEAQEMFKEEYAKEVSQYTDVTPNFDWWFRSGRYDGASDLERRWHIGLEQIEKFFAWT 122

Query: 834 --NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF-EYKTHHHVP 890
             +P     ++ D      +    +     +++ G ID +        I  +YKT +   
Sbjct: 123 EGHPEEVIWIAPDGTP--GIELGFDIDLDGVLVRGYIDAVLRDSDGNVIVRDYKTGNTPG 180

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF-----------IIPQNK 939
            +          QL +Y   L ++Y  +       Y++  K               P+ +
Sbjct: 181 DD---------FQLGVYSVALAETYGIEPPQIGDYYMAGKKGVKGKPTYPYDLGEWPRER 231

Query: 940 LNKAFAEISTKI 951
           + + F E+   I
Sbjct: 232 VAEKFRELEENI 243


>gi|253576025|ref|ZP_04853358.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844600|gb|EES72615.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 227

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 53/151 (35%), Gaps = 25/151 (16%)

Query: 778 QTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMM 837
           +    G  +HK ++ +      + +  I +    +    P   Y+ +   + R    P +
Sbjct: 32  KPLALGKAVHKAIE-LKINGISEHEAIIEAIIESDFH--PEVTYEEIASLVQR---APEV 85

Query: 838 TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP 897
                    +EV     +      I + G ID +   ++  +  ++K++    +  +   
Sbjct: 86  R------GQTEVHFVLPL---GDGIQLQGYIDLL--EEERFW--DWKSNWRPYRAYDT-- 130

Query: 898 YTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
                QL++Y   +      + ++  L ++ 
Sbjct: 131 ----RQLALYAWAIMKMRGLRQVMGTLYFLR 157


>gi|320160806|ref|YP_004174030.1| hypothetical protein ANT_14020 [Anaerolinea thermophila UNI-1]
 gi|319994659|dbj|BAJ63430.1| hypothetical protein ANT_14020 [Anaerolinea thermophila UNI-1]
          Length = 688

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 69/222 (31%), Gaps = 49/222 (22%)

Query: 97  KEKLKKSQDEFIK---IRDRFNTYKMFKSTLASLTLAKY-------LNAHYEEAKKKNCV 146
           K  LK+  +       +R             A L L+K        L   Y +  ++N +
Sbjct: 367 KAALKQEINWIRDMGILRSEDYLQIERHGLGAKLRLSKTYREGVFNLLEAYRQYLRQNTL 426

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL-----IQWEVIRSLTE 201
            D+++L     + L+    S+        + N ILIDE QD +      IQ+ +I     
Sbjct: 427 WDWQELPYYALECLQDPQHSSI------SKFNAILIDEAQDWAPVWLRVIQYFLI----- 475

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                         LF   D  QSIY              R+   +            L 
Sbjct: 476 ---------PENGLLFLADDPSQSIY--------------RLFSWKEKGIEVVGRTRWLR 512

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
             +R+T +I     ++       +   +++   +    S   
Sbjct: 513 TPYRNTWEIYNAAYQLIKGNPEIEKSLQETGEPVAPELSPDQ 554


>gi|304440180|ref|ZP_07400070.1| hypothetical protein HMPREF9225_1416 [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371229|gb|EFM24845.1| hypothetical protein HMPREF9225_1416 [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 803

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 52/168 (30%), Gaps = 31/168 (18%)

Query: 779 TFNRGLIIHKLLQVIF-TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL---------LSI 828
            F  G I+H  L+       +      I        + +     K L             
Sbjct: 562 AFEMGSIVHSALESFVIDFKKININLNINDKLNFFDRAFDDLYKKYLTPKYLLANFKDRY 621

Query: 829 TRLLENPMMT------------------TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
            R+L N ++                      S +S SE  +  K       +   G+ID+
Sbjct: 622 RRMLFNKLIKIQEKIKDCKEVKTEVGFGDRFSRESLSEEPIELKFGNYI--LRFRGKIDR 679

Query: 871 ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
           + I    I I +YKT      E + +    + Q  +Y+KI    +  +
Sbjct: 680 VDIYDDEIVITDYKTGSRANIEEKDLSSE-LYQHHVYKKIASKFWNER 726


>gi|237713863|ref|ZP_04544344.1| ATP-dependent DNA helicase replicase [Bacteroides sp. D1]
 gi|262409228|ref|ZP_06085772.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 2_1_22]
 gi|294645792|ref|ZP_06723476.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294809466|ref|ZP_06768170.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446019|gb|EEO51810.1| ATP-dependent DNA helicase replicase [Bacteroides sp. D1]
 gi|262352975|gb|EEZ02071.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 2_1_22]
 gi|292638871|gb|EFF57205.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|294443338|gb|EFG12101.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 687

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 34/172 (19%)

Query: 142 KKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           +KN +L++ DL  +   +  L   +  +++         H+LIDE+QD S IQ++VI+ L
Sbjct: 437 RKNRILEYADLAPLAYLHIALDGNNAQSYV--------KHLLIDEMQDYSPIQYKVIQKL 488

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                        P     +GD  QS+  +  +    + +                 I++
Sbjct: 489 Y------------PCRKTILGDASQSVNPYGSSTAGMIQKA-----------FVTGEIMK 525

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGL-SEDSTTTIRHRSSRIGQVGTVQL 310
           L  S+RST +I +   K+ S  E    +   +    +  +S++    G   L
Sbjct: 526 LCKSYRSTFEITSFAQKIQSNNELEPIMRHGEHPKILPFKSTKEEIQGIADL 577


>gi|227536349|ref|ZP_03966398.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243725|gb|EEI93740.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 979

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/449 (10%), Positives = 126/449 (28%), Gaps = 66/449 (14%)

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
           +        FQ   + + + + + +   S  ++       ++  +Q  +    + I  L+
Sbjct: 433 ERLVQQKGIFQFFFQKVRDALSLTKELKSLLEYLAKRHLEQQNLRQLDAELFVKTIQELN 492

Query: 531 EFLNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPV 587
              +   ++ Q S ++      + L +          +    + +++M +   + L    
Sbjct: 493 RMHDTLAQHIQTSGNNFAPRFAAALIRKALEAISVPLSGDPLSGLQVMGLLETRNLNFDH 552

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V ++     +     +    I  SL    G+P+                    ++     
Sbjct: 553 VVILGLNDGIIPQNSVGNSFIPDSLRRAYGLPV-------------------LENQDAIS 593

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             + Y  + RA     +       +      R    +                +N   + 
Sbjct: 594 AYIFYRLVQRAQKLSFVYNSLTDESNTGEPSRFLKQL-------------EFESNFEFRY 640

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
           +    +      +   + +   I   +       +  S           ++         
Sbjct: 641 QDQHLQIKVEDQQELVIPKTTVIMDKLGLYLSGNRTLSASALTTYIANPIDFFYKYVAEI 700

Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVI------------FTLPEHKRKNFITSYCTKNAKL 815
           +  E +    +  N G I+H  ++                    KRK+          K 
Sbjct: 701 SEPEEVNEVVEANNLGTILHGAMEDFYNQLKAESNFISPERIAQKRKDLTKLIEHNFIKE 760

Query: 816 WPAKEYKNL----LLSITR---------LLENPMMTTAMSCDSYSE---VSVSGKINCPK 859
           +  +  K +    +  +           +L++   +   +     E   V      +  +
Sbjct: 761 FYPENTKKIHFTGIQRVIMAIVKEYIHIILDHDERSAPFTILQMEEEMIVPFEFNDSYGR 820

Query: 860 KDII-ISGRIDQISISQQNIF-IFEYKTH 886
           K II + G ID++ I Q  +  I +YKT 
Sbjct: 821 KQIIHMKGIIDRVDIGQDGVTRIVDYKTG 849


>gi|170760303|ref|YP_001788657.1| putative helicase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407292|gb|ACA55703.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 709

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 19/111 (17%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +   EI HI+IDE QD S +Q+ V++ LT+            +++  VGD  Q      G
Sbjct: 489 RYRNEIKHIVIDEAQDYSFLQFVVLKELTDC-----------QSITIVGDVNQRTLPCKG 537

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
             P   L         +           L  S+RST +I+   +K   I +
Sbjct: 538 EVPMLCL--------DSVFNRVDVEYFNLDKSYRSTKEIIEYANKHLKINK 580


>gi|85057571|ref|YP_456487.1| hypothetical protein AYWB_291 [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789676|gb|ABC65408.1| conserved hypothetical protein [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 224

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 20/133 (15%)

Query: 152 LIINTNDLLKKRDVSAWIRYKIDQEI-NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
           LI     L++  D   ++           + IDE QD +   + +I+ L           
Sbjct: 15  LITLDVLLIETSDFIEFVERNNGLIYNRPVFIDEFQDLNYFYYFIIKELL---------F 65

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA-D 269
           + P  L+  GD  Q+IYS  G   + +    +                 L  ++RS   +
Sbjct: 66  NKPNFLYCFGDYTQNIYSSFGYSERILKLFVKDFIS---------QKHFLNFNYRSKGIN 116

Query: 270 ILTVVDKVFSIPE 282
           I+   +++    E
Sbjct: 117 IVKAANELIDNKE 129


>gi|120406956|ref|YP_956785.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
 gi|119959774|gb|ABM16779.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1]
          Length = 737

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 100/345 (28%), Gaps = 45/345 (13%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKK---SPDLKEKLKKSQDEFIKIRDRFNTYKMFKST 123
           ++      + +      + T    +    +  L  ++   +      R         +  
Sbjct: 381 AVWREVAQSVESGLDAKLATPAFLETEYVAVVLANRITTLEQYAKVARPGRGVRLSRQQR 440

Query: 124 LASLTLAKYLNAHYEEAKKKNCVLD----FEDLIINTNDLLK-KRDVSAWIRYKIDQEIN 178
           +A   L +          ++   +D    F +++    + L+ K +             +
Sbjct: 441 IAVWKLVEAF--------RRQSQMDETLSFPEILALAAEALRIKSETDGTFLA------D 486

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           H+L+DE QD     W ++R+L  +             LF   D  Q IY      P  + 
Sbjct: 487 HVLVDEAQDLHATHWALLRALVSE---------GANDLFIAEDSHQRIYG----SPIVLS 533

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
           R                    L L++R+TA  L     V S  E    L +   +T  +R
Sbjct: 534 RF---------GIKIVGRSRRLTLNYRTTAQNLHFAVSVLSGAE-YTDLEQAEESTSEYR 583

Query: 299 SSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIG 358
           S+R G    +     +  + ++     +   T         +  +         +  +  
Sbjct: 584 SARNGPAPELIPCTDMADELEAVATKVKAWLTEDGVEPESIAILTRSQEERDRFVRGLGE 643

Query: 359 TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                 +  K        LV+   R      + +     +D  + 
Sbjct: 644 RGVTARSLDKSAATPGQPLVMTMHRAKGMEFSRVILAGADDKHVP 688



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 28/99 (28%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKG+E   V L     +                                   + 
Sbjct: 663 VMTMHRAKGMEFSRVILAGADDKHVP----------------------------LPATLR 694

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
            +    K         LLYV  +RA D L++      S 
Sbjct: 695 SVPDEEKGEAMLRERSLLYVASSRARDALVVTWSGKKSE 733


>gi|75674248|ref|YP_316669.1| hypothetical protein Nwi_0049 [Nitrobacter winogradskyi Nb-255]
 gi|74419118|gb|ABA03317.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 1053

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/411 (12%), Positives = 99/411 (24%), Gaps = 47/411 (11%)

Query: 509 GAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSAN 568
             +     F  R G  + D  D+ ++        +        +    +   + R   A 
Sbjct: 566 DDEGVAVAFDGRHGRALADAFDDLVD-AGERSGLTVRIADYPETFEAAFGDRVVRRPQAT 624

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              +RI     A+  +   V L      V+         +   +  + G+ +   +    
Sbjct: 625 SASLRIYGPLEARLTQCDRVILGGLTEGVWPPAPPTDPWLSRPMRHELGLDLPERRIGLS 684

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            +  + L    +                     +I+   +  +       R  + +   +
Sbjct: 685 AHDFTQLFGAEE---------------------VILSHAAKAAGAPAVASRFLHRLEAVA 723

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWS-THHPENTPLEREETIKQLMDEQKIPKKLFSPI 747
                   K      I   E +      T   +  P          +    I   L  P 
Sbjct: 724 GATRWTSAKQAGARYIQYAEALDRPSEVTPIAQPAPKPPRTARPTRLSVTAIEDWLRDPY 783

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITS 807
                    L            LE++       +RG  IH  L            +    
Sbjct: 784 TIYARYILKL----------LPLEAVDMPLSAADRGSAIHDALGDFTKRYPASLPDDPED 833

Query: 808 YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCD--------SYSEVSVSGKINCPK 859
                 +   A   +              +    +             +  VSGKI  P 
Sbjct: 834 VLRAIGESRFAPLMQRPEARALWWPRFQRIAAWFAEWEPTRRAHLVRIDAEVSGKIEIPI 893

Query: 860 KD---IIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSI 906
                  +S R D+I       F + +YKT        + +      QL++
Sbjct: 894 DGDRRFTLSARADRIEHLGGGRFAVLDYKTGSPPSS--KQVRLGLSPQLTL 942


>gi|327493582|gb|AEA86441.1| putative RecB family exonuclease [Campylobacter phage NCTC12673]
          Length = 243

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 16/165 (9%)

Query: 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
            D     +G  IH L++  F     +      +       L  A +YK       +  E 
Sbjct: 32  KDQTALIKGSYIHWLIEQSFKEEPIEVSKSYHN------PLINADQYKEYNEIFEKFKET 85

Query: 835 PMMTTAMS-CDSYSEV--SVSGKINCP---KKDIIISGRIDQISISQQNIFIFEYKTHHH 888
                        +EV  ++  K+N       D +I G ID I+I  +   I ++KT   
Sbjct: 86  EKYKNIKDLPALGNEVNWALDSKLNPTNYYGNDYVIRGTIDYIAIKNRCAIIIDWKTGKT 145

Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF 933
             ++ ++IP     QL++Y    +       ++C  +YV      
Sbjct: 146 --KDKKYIPDA--NQLALYAIWAEKVLNVDKIICQFVYVETNDFH 186


>gi|323443831|gb|EGB01443.1| ATP-dependent nuclease subunit B [Staphylococcus aureus O46]
          Length = 1158

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 197/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I          +    F           +  ++   E  +  L+ +       +Q 
Sbjct: 466  VIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGYHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKRNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L   I  D W+         +      +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLDEEIVADSWLDAYQVIRDSDLLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 1020


>gi|164690667|dbj|BAF98617.1| putative DNA helicase [Streptomyces argenteolus]
          Length = 1064

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 83/303 (27%), Gaps = 47/303 (15%)

Query: 3   NRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
                 L+    L+  D     + +VS I++            +      L    Q    
Sbjct: 661 RNLAEELDRRLVLLVDDANAYEHVEVSGIDRLA----------LRVVRAALGHYPQLISR 710

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
            +         L        + + +E  +    L + ++  +      R    T    + 
Sbjct: 711 PDLIRRWDDAALRAGLPYGGSFLIREWEQVI--LAQDIRDEEQYLGCARPGRGTGLPRQR 768

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
             A   +           +++  +     L      LL+++ V             H+++
Sbjct: 769 RAAIWRVIDEGTERLRSEERRTYL----QLADEAARLLREKRVPP---------YRHVIV 815

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD    QW ++R+              P  LF VGD  Q I+    +     +  + 
Sbjct: 816 DEAQDLHPAQWRLLRA---------AVAPGPDDLFLVGDPHQRIHDHRVSLSALGINVR- 865

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                            + + +R+T +IL     +      +         +      R 
Sbjct: 866 ------------GRSRRVKVHYRTTQEILDWAVPLLDGRAVSGFDGTADDLSGYRSPIRG 913

Query: 303 GQV 305
            + 
Sbjct: 914 DKP 916


>gi|118475773|ref|YP_891587.1| hypothetical protein CFF8240_0385 [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414999|gb|ABK83419.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 786

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/465 (12%), Positives = 135/465 (29%), Gaps = 71/465 (15%)

Query: 483 HVIKYIHELIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ 541
            +   ++++ + +  F   +   + I+       +  +   NE        +   L+N  
Sbjct: 354 DLYSNLNKIYNQSCDFDRFNSAISSIISKFTLSIEVKTILLNEAF-----LIGALLQNTS 408

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
             + SL E+            +       EV +M V  ++      V ++D    +   +
Sbjct: 409 LRFGSLFEIF----LMNLKEAKLSIVGGAEVTVMGVLESRSGNYDGVIIIDFNDDIVPKR 464

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             K+M +  S+    G+     +   +                    R  Y  +  ++ +
Sbjct: 465 SQKEMFLSSSVRKKAGLISHQDRENLQ--------------------RFYYESLINSAKK 504

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
           + I   S+  +      R +   + + +  +       L +  +    ++ E    +  +
Sbjct: 505 VSISYLSDEESILSRFARDFSFRIDEKYTQNAY-----LNSLKSGGIKLSLEKKDIYLRH 559

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
                E +  +L       +K +      I E                       + + +
Sbjct: 560 DFFATELSFSRLNTYLACKRKYYYRYILGIKEYR-----------------GFDKDISSH 602

Query: 782 RGLIIHKLL-QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA 840
            G  IH  L +          K        K        +   +  +     E    T  
Sbjct: 603 LGSTIHSALQEYFSKFKTKFVKKEFLELFKKYENTIDTLD-SEIFKAGLAKFEESQNTHF 661

Query: 841 MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
            S  S  E     ++      + I+G+ID+I  S     + +YK+     +         
Sbjct: 662 NSGFSVFEC--EKELKNEFCGVKITGKIDRIDKSADTFMLIDYKSGTVPKKS-------- 711

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFA 945
             QLS Y    +  + + S+     Y  + +   IP +      A
Sbjct: 712 -FQLSFY----EALFGHNSIS--FYYDIKNEYKFIPNDTNTDELA 749


>gi|297194086|ref|ZP_06911484.1| ATP-dependent helicase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152104|gb|EDY64831.2| ATP-dependent helicase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 798

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 92/313 (29%), Gaps = 39/313 (12%)

Query: 44  PTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS 103
           P   + A  L+ +       E        F+         +  + +     D +   + +
Sbjct: 442 PGDPELAAELRSSFDEDVTGE------DSFIAFLDAWWPELTPRAVLAAMGDERRLGRWA 495

Query: 104 QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK------KKNCVLDFEDLIINTN 157
           +        R     + +  L+   +A  L              +K   LD  D +    
Sbjct: 496 RRVLNPGEVRRLARSLRRDALSVHDVA--LLDELSTLLGTPARPRKRRELDPLDQLTGLE 553

Query: 158 DLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +L+    + +   A        E  H+++DE QD + +QW ++                 
Sbjct: 554 ELMPQREETQRERAERLAAERTEYAHVIVDEAQDLTPMQWRMV-----------GRRGRH 602

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
            T   VGD  QS      + P+          +      +     EL +++R+ A+I  +
Sbjct: 603 ATWTVVGDPAQS----SWSSPEEAAE-----ARDEALGSRPRRRFELTVNYRNPAEIAEL 653

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
              V          S  +  +   R           L + V ++ +        +     
Sbjct: 654 AATVL-HLAMPGMRSPSAVRSTGVRPRFAVLPDGGDLADAVRAEAERLLEQVDGTVGVVV 712

Query: 334 DSLPQESSASILA 346
               +E +A  LA
Sbjct: 713 AMNRREQAARWLA 725


>gi|154246916|ref|YP_001417874.1| hypothetical protein Xaut_2986 [Xanthobacter autotrophicus Py2]
 gi|154161001|gb|ABS68217.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 884

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/724 (9%), Positives = 162/724 (22%), Gaps = 80/724 (11%)

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+T             G  E    T      R              +          ES 
Sbjct: 134 IVTAAIARIGHAPTVLGPIEIVGLTELSPCWRPLLAALTAHIPVQWTAGPRSVPTWLEST 193

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                  P  +     A   A      I       +     +   +I +           
Sbjct: 194 GVTISRSPAHTPEIR-AVSAATAYHEAIEAMRWVRSLLASGVSPSEIAL---ATASPADY 249

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                 L+ D  I +              +   AL   ++          +         
Sbjct: 250 DDHFLALRADANIDLHFVHGVRTVATREGQAAAALADIVVRGLSQSRLRRLAALCRDGGP 309

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI--HELIHIAQFCSPHDFFTLI 507
            + +            +            S +  ++  +   +    A           I
Sbjct: 310 FEAL--------PEGWLRVLPTDAPLSTPSAWNRLLARLTPDDWPDGANHAPTLRSAVEI 361

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS- 566
           L             G++    + E       +     + L    + ++     +K+    
Sbjct: 362 LAK-----------GSDAAAEIGEAFLKGRAHAIWRKALLAGPAASIDATLEILKQDDGL 410

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                V  M            V L+   S  +     +   I   +   P +        
Sbjct: 411 EACVSVAWMPASALAASPRRFVRLLGLNSSRWPRGIAEDRLIPDHIIPTPVLDPLPVNLA 470

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
            R +  + L             R     +   S  L    H   +  +++          
Sbjct: 471 DRRDFKTILATTAGAVVLSRARRDSDGRLLGRSPLL--AGHGAETYLRRNATPAHAFSET 528

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
           D      +           +  W  +  +   P +  +  +  +   + ++         
Sbjct: 529 DRLMARPQEFAADPQAIGAQGCWRDWRQTEITPHDGLVRADHPLVLAILDRTQSASSLRR 588

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----------IFTL 796
           +  +      +          +    +L        G ++H +L            + + 
Sbjct: 589 LLRNPLTFVWIYAFGWREPQSSAEPLVLD---ALGIGDLVHLVLDRALRDLEIGGGLASA 645

Query: 797 PEHKRKNFITSYCTKNAKLWPAK--------------EYKNLLLSITRLLENPMMTTAMS 842
                +  +       A  W ++              + + L        ++        
Sbjct: 646 DTDMIEIAVARAAQTVAADWESERPVPPAVIWGRTLDDARALAGRALSYGDD----ALPG 701

Query: 843 CDSYSEVSV---------------SGKINCPKKDIIISGRIDQISISQQ--NIFIFEYKT 885
             +Y EV                 +  +  P     I+G ID++ IS       + +YKT
Sbjct: 702 ARAYGEVPFGGSEPKSEAEAPWDATAPVTIPDTGFNIAGYIDRLDISGDGKRALVRDYKT 761

Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK-SLVCLLIYVSEPKVFIIPQNKLNKAF 944
                  I  +      Q  +Y   +K    +  ++   L+Y  +P    +  +      
Sbjct: 762 GRTPQGNI-RLNGGRELQRCLYAFAVKALLGDDVAISASLLYPRDP--VDLQLDDPEAVL 818

Query: 945 AEIS 948
            EI+
Sbjct: 819 TEIT 822


>gi|154247227|ref|YP_001418185.1| double-strand break repair protein AddB [Xanthobacter autotrophicus
           Py2]
 gi|154161312|gb|ABS68528.1| Double-strand break repair protein AddB [Xanthobacter autotrophicus
           Py2]
          Length = 1015

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/349 (9%), Positives = 90/349 (25%), Gaps = 41/349 (11%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
             +   + R  +  H  +RI+    A+ +    + L       +         +   +  
Sbjct: 584 ALFADAMVRPRAEPHARIRILGPLEARLIHVDRMVLGALIEGSWPRIAETDPWLSRPMRG 643

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
           D G+ +   +     +         +                     +++   +     +
Sbjct: 644 DLGLDLPERRIGLSAHDFVQGFGAAE---------------------VVLTFAAKVGGTQ 682

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
               R    +   +   +    + +            +  +    ++ P     T     
Sbjct: 683 SVPSRFVQRLKTVAGEAEWTAARTR---------GARWVQAARRLDDAPAVPRATRPAPA 733

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
               +  +  S  + +       +       G   L+ L +      RG  +H+ +    
Sbjct: 734 PPLALRPRRLSVTEVETFLRDPYSIYARHVLGLLPLDPLDAALGGAERGSALHEAIGRFT 793

Query: 795 -TLPEHKRKNFITSYCTKNAKLWP-----AKEYKNLLLSITR----LLENPMMTTAMSCD 844
              P     + +     +  + +        E+        R    L+            
Sbjct: 794 QDHPCKLPPDALERLLEEGRRAFAPLKAFPAEHALWWARFERAAGFLVAFERERRGHLDH 853

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQE 892
             +E S S +I        ++GR D+I + +  +  I +YKT       
Sbjct: 854 VVAEASGSLEIPLGGGAFRLTGRADRIEVRRDGLLNILDYKTGTAPSAR 902


>gi|283780045|ref|YP_003370800.1| ATP-dependent nuclease subunit B-like protein [Pirellula staleyi
           DSM 6068]
 gi|283438498|gb|ADB16940.1| ATP-dependent nuclease subunit B-like protein [Pirellula staleyi
           DSM 6068]
          Length = 967

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 80/307 (26%), Gaps = 44/307 (14%)

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKH-SNTSNEKKSNQRTWYDMVYDSFHNDER 694
           I+  K+    +   L  +  ++A   L++       +    S      + +  +    + 
Sbjct: 577 IQDAKRRVARDAFALFMLAESKAELLLVVAHRDVEKNPLAPSRLLFATEPLEAARRGVQL 636

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
              +  T +            +   +    +    I+      +    L  P +  +   
Sbjct: 637 FSALPATPTRRIALAPQLTRLSSGFQIPLPDTSLPIEDNFSVSQFKAYLACPYRFYLRHV 696

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ----------------VIFTLPE 798
             L+                 + +    G +IH +LQ                +   L  
Sbjct: 697 LRLSSMN----------DAADELEPRGFGSLIHDVLQSFGRSDEVRDSTHSTDIFDFLAA 746

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS------ 852
             +         +  +     + + +   +           A +   +  V         
Sbjct: 747 SLQGIVSARLGERACRAAVRVQVEQIRSRLQAF---AKWQAARTATGWRIVYTEDLDKQL 803

Query: 853 -GKINCPKKDIIISGRIDQISISQQ--NIFIFEYKTHHHVPQEIEHIP-----YTHIAQL 904
            G +    K +I+ GRID+I        + + +YKT                      QL
Sbjct: 804 TGTMTIDDKPVILRGRIDRIDRHDDTQTLAVLDYKTADTPNAPKAAHRKPQSGEWVDLQL 863

Query: 905 SIYEKIL 911
            +Y  +L
Sbjct: 864 PLYRHLL 870


>gi|169826778|ref|YP_001696936.1| ATP-dependent nuclease subunit B [Lysinibacillus sphaericus C3-41]
 gi|251764607|sp|B1HN89|ADDB_LYSSC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|168991266|gb|ACA38806.1| ATP-dependent nuclease subunit B [Lysinibacillus sphaericus C3-41]
          Length = 1169

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 86/759 (11%), Positives = 188/759 (24%), Gaps = 185/759 (24%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            + S+       IA  I+ +               + +DI++L R      L   L   + 
Sbjct: 311  EASNRRAEVHAIAREITKLTRE---------YGYRYQDIVLLYR---QAELYDPLITSIF 358

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
              Y+I +  N +  +  H  I+   +    + S          +K+ LF   + ++    
Sbjct: 359  QQYEIPIFTNTKKTMLHHPLIELSRSALEIMTSNWKYEPVFRSVKTDLFFPLQAELTIWR 418

Query: 458  TQRHETETVY-------EYIQKFANCGISKFQ--HVIKYIHELIHIAQFCSPHDFFTLIL 508
             +    E          E   +       K++       +      A           I 
Sbjct: 419  ERADRLENYCLAQGIYGERWFEEPRWFYKKYRGLEFHSRVQTDEERAMQAEIEAIRDEIR 478

Query: 509  GAKKGRQQFI--SRFGNEVIDVLDEFLN----------------------FTLRNEQNSY 544
               K  Q  +  +  G ++   L E +                           +EQ   
Sbjct: 479  QPLKSLQDKLSIASTGKDIATALFELVESLQVYEKLQAMKDRELERGDALAASEHEQAWN 538

Query: 545  SSLQELISELEQYPPTIKRAHSANH------------------NEVRIMTVHTAKGLESP 586
              +  L   +  +         A                    +EV + TV  A+     
Sbjct: 539  EWINVLDQFVYMFGEQEMSVEEAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIK 598

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V F++     V+  +   +  +  +  +      +     S N ++              
Sbjct: 599  VAFVLGMNDGVYPTRMEYEGLLSDTEREWFSQIGYELAPTSSNRLLQ------------- 645

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW----------YDMVYDSFHNDERVK 696
             N L Y   +  S++L +   +     K      +            ++         + 
Sbjct: 646  ENFLFYRAASTPSNKLYLTYPTADEEGKALLSSLYIKKFIGNDKIAGLLSGVQAERVVMD 705

Query: 697  KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
             I+L +            +  H      + E + +   +   + K         +    +
Sbjct: 706  PIELLDESALPYLRHPRTALAHLMVQLRQAEHSRELAPEWLALQKFYQQDPYWALIFDRV 765

Query: 757  LNP---------------------------STIDTKGKTNL-----------ESLLSDNQ 778
              P                           S I+   +              E      +
Sbjct: 766  HYPITHKNEAEPLETYITQELYGQKLTSSVSRIEKYFRCPFSHFTTYGLRLEERAEYRLE 825

Query: 779  TFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-------- 830
            TF  G + H+ L         K     T     +      ++ K L              
Sbjct: 826  TFAMGDLFHEAL---------KWITEETHRLQLSWIRLTKQQIKQLARQAVEQIVPVFSH 876

Query: 831  --LLENPMMTTAMSCDSY------------------SEVSVSGKIN-------------- 856
              LL +                                +++                   
Sbjct: 877  QILLSSARYRYIQRKLIRIVERTMMALTQHANVSHFKPIAIEASFGPGQHEQLPPLEIDL 936

Query: 857  CPKKDIIISGRIDQIS---ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
               K + + GRID+I    I  ++   I +YK+      ++  + Y    Q+  Y  +  
Sbjct: 937  TSGKKMFMRGRIDRIDSATIDDRSYLRIVDYKSSAR-DLDLNEVYYGLSLQVLTYLDVAM 995

Query: 913  D----SYPNKSLVCLLIYVS-EPKVFIIPQNKLNKAFAE 946
            +      P ++    ++YV     +  + ++  +    E
Sbjct: 996  ENSTYWLPGETEPAGVLYVHVHNPMLKLDKDMTDSEIEE 1034


>gi|329113821|ref|ZP_08242592.1| Hypothetical protein APO_0595 [Acetobacter pomorum DM001]
 gi|326696831|gb|EGE48501.1| Hypothetical protein APO_0595 [Acetobacter pomorum DM001]
          Length = 1029

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/643 (10%), Positives = 150/643 (23%), Gaps = 98/643 (15%)

Query: 304 QVGTVQLWEQVVSQHDSQCNPQ-------QESWTSYFDSLPQESSASILARRIAYTISNM 356
             G  +L          Q           +E+       +   +   +LA R+A  ++  
Sbjct: 311 HPGGAELENVYRLDAADQQEEAVAISMIMREAIEKPMHRVALVTPDRVLAARVATELARW 370

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDT-----------PLITFLTRFLKNDYKIS-- 403
                +  +     +      VL+R                 ++            +   
Sbjct: 371 ---GVLADDSAGSSLVDTPAAVLLRLVAQMVDSRFSPVSLLSVLKHPLVACGFSSGVCRA 427

Query: 404 -VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHE 462
                +R IL          AL R + +  ++L             + D  F        
Sbjct: 428 TARLLERAILRGPAPPPGFAALCRVVNNALENL-NERAKAKLEGGITADRPFGPVALSVF 486

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +   ++      +   +  ++   +L          D    ++      ++ ++   
Sbjct: 487 MQRLAFCLEPVLGWELDAVEASVQTAQDLEQ--HCAPVPDLLAALIAT---VERLVATDE 541

Query: 523 NEVIDVLD----------EFLNFTLRNEQNSY------SSLQELISELEQYPPTIKRAHS 566
               + L           +     L +E            L   +   E+          
Sbjct: 542 ESASERLWRGEEGNMLASQLTELMLASEVLPPQPPVVLDGLLTAVLAPERVAMRRGGDPK 601

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           + H  V I  +  ++   +  V L      V+         +   +    G+P       
Sbjct: 602 SLHPRVLIWGLFESRLQTAETVILGGLSEGVWPPVVDAGPWMSRPMRQRMGLPSPEQAVG 661

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
              +                               +I+              R    +  
Sbjct: 662 QAAHDFFASAAAAD--------------------TVILSSARRREGAPVVPARWLTRLDA 701

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                +  +        +NK +      +T      P+       + +   +I   +  P
Sbjct: 702 FLAGRNGYIPNHPALVWLNKLDQPLGP-ATPVAPPQPMPPVALRPRRLSVTEIETWIRDP 760

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806
                     L            L  L       + G+I+HK L+               
Sbjct: 761 YAIYAKHILRL----------EVLPELEEAADASDYGMIVHKALERWVKAYAVAWPENAE 810

Query: 807 SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA------MSCDSYSEVSVSGKINCPKK 860
                   L+ A   +++L    R    P +T              SE  V   I    +
Sbjct: 811 KKL---CDLFSASLQEHVLRPALRAWWAPRLTRIARWVVQAEEKRRSEHGVPRAILTEIR 867

Query: 861 DII-----------ISGRIDQISISQQNIFIF-EYKTHHHVPQ 891
             +           I GR D+I ++     I  +YKT      
Sbjct: 868 GRVSIMDAPGGKFDIVGRADRIELNADGHVIVQDYKTGTLPSA 910


>gi|224539621|ref|ZP_03680160.1| hypothetical protein BACCELL_04529 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518772|gb|EEF87877.1| hypothetical protein BACCELL_04529 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 965

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/423 (13%), Positives = 118/423 (27%), Gaps = 75/423 (17%)

Query: 529 LDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPV 587
           ++  L+     E      +L+ L+  L                 +++M V   + L+   
Sbjct: 485 INRLLSLIDSGELNLQTDTLKRLLCRLLATSNIPFH--GEPAIGMQVMGVLETRNLDFRN 542

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           + ++            +   I  +L    G+     ++              +   + E 
Sbjct: 543 LIMLSLNEGQLPKAGGESSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAEN 596

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             LLY                NTS++  +       M+     +   + +  L    +  
Sbjct: 597 ITLLY----------------NTSSDGLNRGEMSRFMLQFLVESPHDISREYLEAGQSPQ 640

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
                            E    + +     + PK LFSP   +      L        G 
Sbjct: 641 SGREIRIEKTP------EIIARMYEKYSLVRHPKALFSPSALNAYLDCRLKFYYRYVAGL 694

Query: 768 TNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKL-------- 815
              + + ++  +   G I H+  ++    +    +  RK  +      + KL        
Sbjct: 695 KAPDEVSAEIDSALFGTIFHRSAELAYKDLTANGKEIRKEDLEQLLRNDVKLQNYVDTAF 754

Query: 816 --------------------WPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
                                 AK   + L  + R   +              V+   +I
Sbjct: 755 KEEFFHVLPTERPEYNGTQLINAKVIASYLRQLLR--NDLQYAPFTMEGMEEPVNEIMEI 812

Query: 856 NCPKKDIIIS--GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLS 905
             P+  + ++  G ID++      + I +YKT      P+ IE +         +I Q  
Sbjct: 813 ETPQGKLALNIGGTIDRMDSKGDTLRIVDYKTGGSPKTPENIEQLFTPADGRPNYIFQTF 872

Query: 906 IYE 908
           +Y 
Sbjct: 873 LYA 875


>gi|319939428|ref|ZP_08013788.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus
           anginosus 1_2_62CV]
 gi|319811414|gb|EFW07709.1| ATP-dependent helicase/deoxyribonuclease subunit B [Streptococcus
           anginosus 1_2_62CV]
          Length = 1090

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 75/650 (11%), Positives = 187/650 (28%), Gaps = 109/650 (16%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A +I   +              + KDI +L+    D        + + + Y+I    
Sbjct: 308 EYVAKSIRQRVHDG----------ARYKDIRLLL---GDVEAYRLQLKTIFDQYQIPFYL 354

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                +  H  ++ + AL R           + ++K+ L+   + +   +  Q      V
Sbjct: 355 GRSESMAHHPLVQFIEALVRLKRYNFRTEDLLNLVKTGLYGHLKQEELDLFEQYIRFADV 414

Query: 467 YEYIQKFANCGISKFQHV-IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG--- 522
               +   +   ++ Q   + +I++L           F +    A    Q+F        
Sbjct: 415 KGISKFSKDFTHNQHQKFDLIHINQLRKKIVTPLLEFFKSRSQTATGLLQKFHQFLTTIS 474

Query: 523 -----------------NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP----PTI 561
                                +V   F +   +      +S  +L   L         + 
Sbjct: 475 FSQNFAGLVDFTNPQDQERQEEVWKAFCHVLEQFASVFSASKVKLDDFLTLVQSGMLLSN 534

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            R   A  + V + +    + L SP V+ V      F      K  +           + 
Sbjct: 535 YRTIPATVDVVTVQSYDLIEPLSSPFVYAVGLTQDYFPKIVQNKSLLSDEE------RLR 588

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           + ++    + +    +   +  +     LL   M    D+L++      +  + +     
Sbjct: 589 LNEATDERSELLIAAQENLQKNRFVALSLLNAAM----DRLVLSTPQIVNEIENNISPYL 644

Query: 682 YDMVYDSFHNDERVKKI-KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
            ++          VK+    ++ I     +       +  +   ER  T K+        
Sbjct: 645 LELHEQPIGLPIEVKRSQATSDDIGTYRALLARVIELNQGDIDRERSLTEKEQTFWSVAV 704

Query: 741 KKLFSPIKND--------------------------INEPYILNPSTIDTKGKTN----- 769
           + L   ++++                           ++ ++L+ S +    +       
Sbjct: 705 RVLRKKLESEGISIPNVTSSLTTETLSEQTLQALYPPHQAFLLSASALTEFYRNQYAYFL 764

Query: 770 ------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                  E +       + G  +H++ + +  + E   + F         +     E+K 
Sbjct: 765 KYVLALQEEMTIHPDARSHGNFLHRVFEKV--MQEQSSEPFDNRLEKAIQETSQEAEFKT 822

Query: 824 LLLS-ITRLLENPMM-------TTAMSCDSYSE-VSVSGKINCPKKDII---------IS 865
           L       L  + ++          +  +   E +         + +++         I 
Sbjct: 823 LYTENAEALFAHEVLLDTARATGHVLERNDLVETIQEEAVFGQEETNVLTLSDGRNLQIR 882

Query: 866 GRIDQISIS--QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           G++D+I       ++ + +YK+      + +       +QL  Y   LK 
Sbjct: 883 GKVDRIDRLKIDGSLGVVDYKSSDTNF-DFQKFFNGLNSQLPTYLAALKQ 931


>gi|294780310|ref|ZP_06745679.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
 gi|294452574|gb|EFG21007.1| conserved hypothetical protein [Enterococcus faecalis PC1.1]
          Length = 271

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 77/207 (37%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  SD +    G  +H   +    + +  ++   +   +        K
Sbjct: 38  EAAALAKLKGEWTPESDPKALLVGNYVHSYFES-PEIHKAFKEENKSKMLSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +              EV V+G+I       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIKRLKKEEAFLNIY--QGKKEVIVTGEI----GGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDIHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|152975742|ref|YP_001375259.1| UvrD/REP helicase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024494|gb|ABS22264.1| UvrD/REP helicase [Bacillus cytotoxicus NVH 391-98]
          Length = 780

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 19/118 (16%)

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            HI IDE QD S  Q+  ++ +                +  +GD  Q+IY    A     
Sbjct: 548 KHIFIDEAQDYSTFQYAFLKRIF-----------PHTKMTILGDFNQTIYE--QATNHLF 594

Query: 238 LREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +   +         ++   I L  S+RST  I+    +     E  +    D    +
Sbjct: 595 SQLNDLYG------EERSEKIVLKRSYRSTKQIIEFTKQFIPHSEEIEPFERDGRKPV 646


>gi|145482831|ref|XP_001427438.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394519|emb|CAK60040.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2342

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 21/158 (13%)

Query: 134 NAHYEEAKKKNCVLDFEDLI-INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              YE+ K +    D  DL+     +L    D    +         ++L+DE+QD     
Sbjct: 656 FQIYEQYKYQLGYYDLLDLVNHINQELANGNDFIENVH--------YLLLDELQDVPRAV 707

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
             ++  LTE              LF  GD  Q+I    G     V       +       
Sbjct: 708 LILLDQLTELG------------LFCCGDNAQNIAKGIGYRFFEVQNCLLSTRNEKKKTY 755

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           +   I +L ++FRS   IL + + V  + E       D
Sbjct: 756 RNLKIFDLSINFRSHNQILQLANSVIRMIEIFFPQKID 793


>gi|255552113|ref|XP_002517101.1| ATP-dependent helicase NAM7, putative [Ricinus communis]
 gi|223543736|gb|EEF45264.1| ATP-dependent helicase NAM7, putative [Ricinus communis]
          Length = 882

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/402 (14%), Positives = 109/402 (27%), Gaps = 61/402 (15%)

Query: 101 KKSQDEFIKIRDRFNTYKMFK----STLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINT 156
             + D  ++   R     + +       A+      + + Y           F++L+   
Sbjct: 452 NSAADHLLEKLLREKAANIRQNEIFRLNATSRPFGDIKSDYIRFC------FFDELLFKC 505

Query: 157 --NDLLKKRDV------SAWIRYKI---DQEINHILIDEV-QDTSLIQWEVIRSLTEDFF 204
                L++  +      SA   Y         +HI +DE  Q +       + +L     
Sbjct: 506 PPLSALRRYRIIISTFMSACYLYAEGVERGHFSHIFLDEAGQASEPESMIPLSNLCG--- 562

Query: 205 VGKNTHSSPRTLFAVGDEKQ---SIYSFHGAEPKRVL-REKRINQKRATNAGQKFSIIEL 260
                      +   GD KQ    IYS    +        +R+ +      G +  I +L
Sbjct: 563 -------RDTVVVLAGDPKQLGPVIYSRDAGDLGLQKSYLERLFECECYCNGDENYITKL 615

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
             ++R   +IL +  ++F   E       +  T I   SS     G          Q   
Sbjct: 616 VRNYRCHPEILKLPSELFYEGELIASKESNDDT-ISLLSSVNLLPGREFPVLFFGIQGCD 674

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           +      SW +  +           A ++   I+ +I    +            DI V+ 
Sbjct: 675 EREGNNPSWFNRIE-----------ASKVVEIINKLIAGGNLNEV---------DIGVIT 714

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
             R+    +      L     I V   ++F   +   I           +  D    +  
Sbjct: 715 PYRQQVLKLKKAFDDLDMP-DIKVGSVEQFQGQERKVIVISTVRSTVKHNDFDRAHCLGF 773

Query: 441 LKSPLF---NFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
           L +P       +      I            +  K       
Sbjct: 774 LSNPKRFNVAITRAMSLLILIGNPHIVNKDPHWSKLLWYCAD 815


>gi|82750583|ref|YP_416324.1| ATP-dependent nuclease subunit B [Staphylococcus aureus RF122]
 gi|123548858|sp|Q2YWU2|ADDB_STAAB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|82656114|emb|CAI80523.1| ATP-dependent nuclease subunit B [Staphylococcus aureus RF122]
          Length = 1158

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 112/905 (12%), Positives = 237/905 (26%), Gaps = 224/905 (24%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            I ID   + S I++ +I+ L       K   S    L   G+  Q       +  ++   
Sbjct: 200  IYIDGFHNFSTIEYLIIKGLI------KYAKSVTIILTTDGNHDQ------FSLFRKPSE 247

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              R  ++ A              S+R         ++     E               + 
Sbjct: 248  VLRHIEEIANELNISIERQYFKQSYR-------FNNQDLKHLEQEFD---------ALQI 291

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            +R+   G + + E    + +                         +ARRI   I +    
Sbjct: 292  NRVACQGHINILESATMREEINE----------------------IARRIIVDIRD---- 325

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                     + ++ +DI +L R      L   +       Y I    + +  +T H  ++
Sbjct: 326  ---------KQLRYQDIAILYRDESYAYLFDSIL----PLYNIPYNIDTKRSMTHHPVME 372

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLF--------------------------NFSEDDI 453
             + +L   I S       + +LK+ +                            + +D++
Sbjct: 373  MIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDEL 432

Query: 454  FKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            F +            + E  +      +   + VI  I          +    F      
Sbjct: 433  FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAATVKDFATAFYE 492

Query: 511  KKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ-----------------NSYSSLQELIS 552
                 +  ++   E  +  L+ +       +Q                 +   S++  + 
Sbjct: 493  SMEYFELPNQLMTERDELDLNGYHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 553  ELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
              +     ++        ++V I T+  AK      V+LV                I   
Sbjct: 553  VFDIGLEQLEFVVIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                          K      +  +       Q +   + YV MTRA   +        S
Sbjct: 613  E------------KKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGS 660

Query: 672  NEKKSNQRTWYDMVYDSFHNDE---------------------------RVKKIKLTNSI 704
            +        + + +   F+  E                              +  L + I
Sbjct: 661  SGDDKEISPFLNQIQSLFNQLEITNLPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEI 720

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
              D W+         ++     +  +  L  + +  K   +  K+   +    + S  + 
Sbjct: 721  VADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEG 780

Query: 765  KGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
              +              E    + Q F+ G I H +L+ I      +          K  
Sbjct: 781  YQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYI----SERINGDFKQLDLKKI 836

Query: 814  KLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSEVS-------------------VSG 853
            +    +  + +L  +   LL +      +S    + V                       
Sbjct: 837  RQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFET 896

Query: 854  KI----------------NCPKKDIIISGRIDQI--SISQQN--IFIFEYKTHHHVPQEI 893
                                    I I G+ID+I          + I +YK+       +
Sbjct: 897  SFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSS-EGSATL 955

Query: 894  EHIPYTHIAQLSI--YEKIL----KDSYPNKSLV-CLLIY--VSEPKV-----FIIPQNK 939
            +     +  Q+ +  Y  I+    +       +    L+Y  V EP++       I ++K
Sbjct: 956  DLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWADIDEDK 1015

Query: 940  LNKAF 944
            L +  
Sbjct: 1016 LEQDL 1020


>gi|299755227|ref|XP_001828511.2| hypothetical protein CC1G_08657 [Coprinopsis cinerea okayama7#130]
 gi|298411127|gb|EAU93344.2| hypothetical protein CC1G_08657 [Coprinopsis cinerea okayama7#130]
          Length = 2215

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 25/173 (14%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            + + Y + K +N  LD  D    T+ +LK    +  +R     +I+++ +DE QD  LI
Sbjct: 720 AIYSAYLKRKCQNGDLDVAD---RTHRILK----AFELRGVPGTKIDYLYVDEAQDNLLI 772

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
              ++RSL  +             LF  GD  Q+I          +       +KR  + 
Sbjct: 773 DAMLLRSLCRNPDG----------LFWAGDTAQTIAIGSSFRFDDLKAFLYRLEKRREDK 822

Query: 252 --------GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                     +    +L +++RS   I+     V  +  +    + DS    +
Sbjct: 823 LDDSRKGAQGELRTFQLAINYRSHGGIVQCAHSVIELITHFWPYAIDSMAPEQ 875


>gi|326202228|ref|ZP_08192097.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
 gi|325987346|gb|EGD48173.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782]
          Length = 760

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 83/242 (34%), Gaps = 49/242 (20%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
           +  +      ER   +   F  +    +K      I K +  L   +K       K+   
Sbjct: 412 RARAGIADASERQRCILEAFEKRDRVLEK------IEKAAKSL---IKDYVASLPKLSPY 462

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL-----KKRDVSAW 168
                + K+T     +        E  K              T D+L     ++ D++  
Sbjct: 463 QYYVDLMKNTEVFNRIVAKYTDE-ETCKFIR---------EYTLDILNSGGIEQEDLAPI 512

Query: 169 IRYKI-----DQEI--NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           I  K      D++I   HI+IDE QD S  Q+ V++ + +D            +   +GD
Sbjct: 513 IYLKYKVYGMDEKIPVRHIVIDEAQDFSAFQFYVMKKIVKD-----------SSFTILGD 561

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q I+ + G   +                G+K   + L  S+R+T +I+   + V    
Sbjct: 562 LCQGIHFYRG--VRNWDEVVNNV-----FEGKKCEFLTLEQSYRTTVEIMEAANNVMEKL 614

Query: 282 EN 283
           +N
Sbjct: 615 DN 616


>gi|259417393|ref|ZP_05741312.1| double-strand break repair protein AddB [Silicibacter sp.
           TrichCH4B]
 gi|259346299|gb|EEW58113.1| double-strand break repair protein AddB [Silicibacter sp.
           TrichCH4B]
          Length = 977

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 73/643 (11%), Positives = 168/643 (26%), Gaps = 49/643 (7%)

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
             DI   VD     P   + +S          +          L +   +    +    +
Sbjct: 271 PRDIRAWVDTKPVSPPRNKLISLALRPAPVTDAWMTEGPHLTDLDQATDALTLIEAASPR 330

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
               +    L Q +     A  I      M+      +  +   I   D   L  +    
Sbjct: 331 SEALAIALRLRQAAEDGQTAALITP--DRMLTRQVSAALDRWN-ILPDDSAGLPLQLSPP 387

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
                    L       +  +    L  H         G  +L   D    +     P  
Sbjct: 388 GRFLRHVADLFCR---PLQADMLLTLLKHPLSHSGEERGLHLLHTRDLELHMRRYGPPFP 444

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
           +      F          + +   Q FA    +  + +  ++ +L   A      +F   
Sbjct: 445 DHESLSTFGTTRDLQPGWSDWLA-QSFAGREQTGLRALSDWVADLRTTA------EFIAA 497

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
                   + +  + G + +++  E             ++                R   
Sbjct: 498 GSQTGGAGELWDKKAGRKALEIFQEL--EAEAPHGGEMTARDLADLLGALLSQGEVRDRD 555

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A +  + I     A+   + +V L       +         +   L  + G+ +   +  
Sbjct: 556 APYGSIMIWGTLEARVQGADLVILGGLNEGSWPEAASPDPWLNRKLRHEAGLLLPERRIG 615

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
              +     +   +            V +TRA            S E  +    W + + 
Sbjct: 616 LSAHDFQQAVAAPE------------VWLTRAIR----------SEEADTVPSRWLNRMT 653

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-S 745
           +              +++     +  +W++      P                P++L  +
Sbjct: 654 NLLGGLPDQGGQAALSAMRMRGQVWLDWASVLDAPLPSPLSPRPSPRPPVAARPRRLTVT 713

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFI 805
            I   I +PY +    +       ++ LL       RG IIHK+L+      + + +   
Sbjct: 714 EIPKLIRDPYAIYAKHV--LRLKPVDPLLQKPDALLRGTIIHKVLEDFIKSAQEQPETLT 771

Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY------SEVSVS--GKINC 857
                + ++     E    +     L     +                       G++  
Sbjct: 772 ARAFIEQSQRVLEAEVPWPVARTLWLTRLKKVAEDFVAGERERQLRARPSGFEKSGQVRL 831

Query: 858 PKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYT 899
              D  I+ + D+I + ++  + +++YKT     ++ +     
Sbjct: 832 DPLDFEIAAKADRIDVDERGMLHLYDYKTGDPPSEKQQKSFEK 874


>gi|153872141|ref|ZP_02001118.1| Ankyrin [Beggiatoa sp. PS]
 gi|152071392|gb|EDN68881.1| Ankyrin [Beggiatoa sp. PS]
          Length = 638

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 81/250 (32%), Gaps = 38/250 (15%)

Query: 51  QTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKI 110
             L         E  F   +++F+  +  P+     ++ ++   + K  +   Q E   +
Sbjct: 151 DYLASIHVPPTKEMPFREFANWFIRHRSGPK----LKDAHQLFEEFKGVITGHQTEVAYL 206

Query: 111 -RDRFNTYKMFKSTLASLT--LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSA 167
            R+ +    + +S  A     L   L   Y E  +     D   +I +            
Sbjct: 207 SREAYLDLGIKQSIFAVEERPLVYDLFERYLEDMRDQGYHDSN-IISHAY---------- 255

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
               K+    + I++DEVQD + IQ +VI              + P      GD  Q ++
Sbjct: 256 --LEKVKPSYDFIIVDEVQDLTNIQLQVI----------LKALNEPTHFILCGDSNQIVH 303

Query: 228 SFHGAEPKRVLR--EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
                 P        K +   +    G    I  L  ++R++  +    + +  I     
Sbjct: 304 ------PNFFSWSKVKSLFYHQKVKGGPPELIRVLNTNYRNSPQVTQAANNILKIKNTRF 357

Query: 286 GLSEDSTTTI 295
           G  +  +  +
Sbjct: 358 GSIDKESNYL 367


>gi|331083370|ref|ZP_08332483.1| hypothetical protein HMPREF0992_01407 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404451|gb|EGG83996.1| hypothetical protein HMPREF0992_01407 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 733

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 25/170 (14%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              Y +   +   + ++D I      LK    + +      + I  ++IDE QD   +Q+
Sbjct: 460 IREYTKENLEAGCIYYDDAIAMLYLYLKIYGTNEY------KNIKQVVIDEAQDYYPLQY 513

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           E+   L                   +GD KQ++        K  +       K       
Sbjct: 514 EIFGLLF-----------PNAKFTILGDMKQTLAK------KEDISFYEEIHKILNKKKS 556

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIG 303
               I L  SFR T +IL    K        +  +    +     +    
Sbjct: 557 SL--IVLDKSFRCTNEILNFSLKFIEQSPQIKSFNRKGDSPEVFIADNSE 604


>gi|315453532|ref|YP_004073802.1| hypothetical protein Hfelis_11280 [Helicobacter felis ATCC 49179]
 gi|315132584|emb|CBY83212.1| putative hypothetical protein [Helicobacter felis ATCC 49179]
          Length = 768

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/535 (10%), Positives = 142/535 (26%), Gaps = 79/535 (14%)

Query: 435 LSFVCMLKSPLFNFSEDDIFKICTQRH--ETETVYEYIQKFANCGISKFQH-VIKYIHEL 491
           L+   + +          +  I           + +             Q        +L
Sbjct: 262 LALQRVQEWLSEGLDPSTLAIITPSAEILSALKLLDLGHNLNFARGENVQEVFAPLFKDL 321

Query: 492 IHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV-IDVLDEFLN----FTLRNEQNSYSS 546
             +            ++  ++  Q  + ++      D   EF           +Q S   
Sbjct: 322 EALKTTLQTCQTSNPLITLQEHTQALLEKYTAHKLQDFHQEFFETYHAIASNLQQYSVVD 381

Query: 547 LQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
           L     EL        R       +V+++ V   +GL    + ++D   ++        +
Sbjct: 382 LL----ELYMRNLQEVRLDHTTGGKVKVLDVLECRGLHFERIVILDFNDRLVPSVQDSDL 437

Query: 607 HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
            +        GIP    +   + +    L+K+                 T   D    C 
Sbjct: 438 FLNTFTRTALGIPTLEDRENLQKHYYYQLLKN-----------------TSHVDIAYSCA 480

Query: 667 HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER 726
            +   ++          M+ +        +K +    I               E  P + 
Sbjct: 481 QNAIPSK----------MLAELSLETPLPEKEENEFVIFPQARTWEFVPDKIIERIPSDF 530

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLII 786
           + +  ++ D     ++ +      +                       +  ++FN G ++
Sbjct: 531 KFSATKIKDFMACKRRFYLQYLAKLTP---------------------APQESFNMGSLL 569

Query: 787 HKLLQVI---FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
           H +L+                  S+      L        L      ++    +    +C
Sbjct: 570 HTILEAYYSGSHYQNTHAPITFDSFLKTAQSLESYANLNALQRLELEVVAQ-KLAPFFAC 628

Query: 844 D----SYSEV-SVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIP 897
           +    + ++V +   +          SG ID+I   S     + +YK        ++   
Sbjct: 629 ETGKLARAQVVACEQRFETSIGGFSFSGIIDRIDQNSAGGYDLLDYK----FKSALKPQE 684

Query: 898 YTHIAQLSIYEKILKDS-YPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
             +  QL+IY    +   Y  + +      + E  +     ++L +    +   +
Sbjct: 685 EGY--QLAIYALGAQSLGYTPEHI--YFYDLKEGCLLEKSLSELQEDQEGLLEVL 735


>gi|86131070|ref|ZP_01049669.1| probable DNA repair protein [Dokdonia donghaensis MED134]
 gi|85818481|gb|EAQ39641.1| probable DNA repair protein [Dokdonia donghaensis MED134]
          Length = 896

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/609 (9%), Positives = 158/609 (25%), Gaps = 96/609 (15%)

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC----MLKSPLFN-FSEDDIF 454
           +   V       +           L     + + +  +      +L++P+     ++   
Sbjct: 317 HIHKVNITMGIPIGKTPTASFFEQLLSLKKNPQTNGYYYKDVLKVLRNPITQALLKETAT 376

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
            +  +      +Y       N    +  ++ K +    +     +  +   +I   +   
Sbjct: 377 TLQQEIISKNLIYISTGVLLNTVNQEHLNIAKTLFLEWNDNPKLAVSNCLQIISDLRTIY 436

Query: 515 QQFISRFGNE-------VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
            +  +    E         + L   +       +   S +   I        +       
Sbjct: 437 DETQNSLQVEYLYGFYVAFNKLKTLMEV-----REHISDISTFILFYRDIISSETIDLKG 491

Query: 568 NHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           + +  ++IM V  ++ L+   V L      +      +  +I   L         +P   
Sbjct: 492 DPDQGLQIMGVLESRVLDYDHVILTSVNEGILPSGKSQNSYIPYDLK----KLYDLPTYS 547

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
            ++ + +    H           LL+   T   D L     S   + ++S        + 
Sbjct: 548 EKDAVYAYHFYH-----------LLHRAST--VDLLYTTHSSGLGSSEQSRF------IR 588

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                             +       +     PE    +  + +K+ +    +   L +P
Sbjct: 589 QIEEEGIHNLTKYTVTPASHSTSKKSQVIAKTPE-VVTKLSQFLKRGISPSALTTYLRNP 647

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNF 804
           +         ++ S    +                 G I+H  L+ +    +     ++ 
Sbjct: 648 VLFYERYILGIDSSDEVEETV----------AANTMGTIVHNTLEELYKPHIGIILTEDI 697

Query: 805 ITSYCT------------KNAKLWPAKEYKNLLLSITRLLENPMMTT----AMSCDSYSE 848
           + +               +       +    ++ ++     +  +          D+   
Sbjct: 698 LKNLIKGIEQEVRNQFKSEYGLTHIQEGKNKIIYAVICRYVHNYLKREISLLKKGDTVII 757

Query: 849 VSVSGKINC--PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE----------HI 896
            +V   +        I + G++D +     ++ I +YKT      ++             
Sbjct: 758 QAVEDDLRDISLTDTITLRGKVDLVEQRNGHLNIIDYKTGKVTQTDLNLKSYEDLLLPEG 817

Query: 897 PYTHIAQLSIYEKILKDSYP-NKSLVCLLIYVSE----------PKVFIIPQNKL---NK 942
            +    Q+ +Y  +L    P    +   +I               +   I  + L     
Sbjct: 818 KFEKAFQVLMYAFMLHKKKPLQFPVNAGIISFKNLQSGFLPFKYNRNQEITADTLLEFEA 877

Query: 943 AFAEISTKI 951
               +  +I
Sbjct: 878 VLKRLVKEI 886


>gi|313673704|ref|YP_004051815.1| hypothetical protein Calni_1746 [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940460|gb|ADR19652.1| hypothetical protein Calni_1746 [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 921

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/436 (12%), Positives = 127/436 (29%), Gaps = 67/436 (15%)

Query: 480 KFQHVIKYIHELIHIAQFCSPHDFFTLI--LGAKKGRQQFISRFGNEVIDVL--DEFLNF 535
            F H    I + I I+           +  L  +   ++            +  ++F++ 
Sbjct: 408 SFSHFYNLITKFIEISSIHDFSTSLEYLTSLMHRYPPEKLKELIFTVNTINIFVEKFIDT 467

Query: 536 TLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTG 594
             +  ++   +L+      ++    I      +    ++IM +  A+GL+   +F+ D  
Sbjct: 468 LKKLPEDKEINLELSYIIFKEISKDILIPFEGSPLKGLQIMGILEARGLKFEHIFIPDMN 527

Query: 595 SQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654
             V          I  S+    G+P                 +  +   +  + RL+Y  
Sbjct: 528 EGVIPSVDKVDPLIPESIKRIIGLP---------------SYEEKEILMRYNFFRLVYSA 572

Query: 655 MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEW 714
                 ++ +   +   +  K  +  + D +      D   +   +    +        +
Sbjct: 573 -----KKVYLFFKTGVGDNSKFVRSRYVDQLILKEELDRNQEFANIYQPKSN-------F 620

Query: 715 STHHPENTPLEREETIKQLMDEQKIPK-KLFSPIKNDINEPYILNPSTIDTKGKTNLESL 773
            T   E+   ++   I             L  P +  +     + P+           ++
Sbjct: 621 FTPKHEDLSFQKPCDISLKSYSPTALDCYLSCPYRYYLRYIRQIPPAV----------NI 670

Query: 774 LSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTKNA------------------- 813
            SD +    G I+H +L+  I      K    + +                         
Sbjct: 671 DSDFKADRVGSIVHAILEETIELGKPVKDSFLVENALNIIDCVRSQNKRITTKINNEGNL 730

Query: 814 --KLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQ 870
              +    E +  +   I     N  +      ++  + S+        K   + G ID+
Sbjct: 731 KNYILDMSELEYEMFRKILEYRFNRFLDVHFDDENLRD-SIVMAKEKGIKKGKLEGVIDR 789

Query: 871 ISISQQNIFIFEYKTH 886
           I   +  + I +YKT 
Sbjct: 790 IDKLRDKLIIIDYKTG 805


>gi|29566856|ref|NP_818421.1| gp123 [Mycobacterium phage Omega]
 gi|29425581|gb|AAN12763.1| gp123 [Mycobacterium phage Omega]
          Length = 278

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 57/166 (34%), Gaps = 32/166 (19%)

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS-I 828
               L+   +   G  +H  L++               Y   +  L    +   L  + +
Sbjct: 101 AMWKLNSEASTTFGTSLHAALELYG------------RYLELSKILKDGTDESCLTKNPV 148

Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
            R    P++    + +  +E +   +      D +  G ID++ +    +++ +YK++  
Sbjct: 149 LR----PIVQKFFTEERIAEKAYYEEF-VADPDTLSCGLIDRLVVDDDGLWVEDYKSNAS 203

Query: 889 VPQEIEHIPY------------THIAQLSIYEKILKDSYPNKSLVC 922
           V  + E                 ++ QLS Y  ILK     +++  
Sbjct: 204 VTDKKETYLAPFKDLVEPNALGGYVIQLSYYAAILKK--YGRNVKG 247


>gi|325922071|ref|ZP_08183868.1| hypothetical protein XGA_2884 [Xanthomonas gardneri ATCC 19865]
 gi|325547455|gb|EGD18512.1| hypothetical protein XGA_2884 [Xanthomonas gardneri ATCC 19865]
          Length = 591

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/516 (12%), Positives = 126/516 (24%), Gaps = 110/516 (21%)

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
              R  +      +LIDE QDT     + +++   D       H     +   GD  Q I
Sbjct: 173 PKFRAVLTARYPVLLIDEYQDTDAAFVDALKAWFLD-------HGEGPLIGLFGDHWQKI 225

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y       +                     +I+   +FRS A I+ +++++         
Sbjct: 226 YGDGCGSVEHD----------------ALEVIDKNANFRSVAPIVQMLNRM--------- 260

Query: 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA 346
                   +    S     G  +++         +       WT          +++  A
Sbjct: 261 -----RPDLPQMVSDPDAPGEARVFHTNDWPGVRRTGQGGGHWT--------GDTSADAA 307

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           R     I   +G +    +  K  I      VL R                      + G
Sbjct: 308 RAYFGHIKRRLGGEGWDFSVGKTKILMLSHSVLAR-------------EQGYASIPPIYG 354

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
                  +   +K      +F+             ++  +    +       +  +    
Sbjct: 355 Q-----FNEPWLKKDDPHIKFLTD--QLEPACAAFEARRYGEMFESFGAGMPRIRKHVDK 407

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
             +          +    I  + + +         +           R++ ++  G E +
Sbjct: 408 VAWTDTMETLIALRLSGSIGEVIDFLAAQPHMRLPEAVEE-------RERRLAEIGPEPV 460

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +     +    +    SYS +  L   ++                    T H  KG E  
Sbjct: 461 EGESRRVTQLRKLRAVSYSEVIALDQFID--------------GHTPFATKHGVKGAEFE 506

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V +V                         G                      K    E 
Sbjct: 507 NVLVV------------------------VGRGWNKYDFAQMLAWSEAGPPADKLEFYEN 542

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
              L YV  +R   +L +      S +  S   TW+
Sbjct: 543 NRNLFYVACSRPKVRLALLFTQLLSPDAMSRLATWF 578


>gi|118382620|ref|XP_001024466.1| hypothetical protein TTHERM_00298320 [Tetrahymena thermophila]
 gi|89306233|gb|EAS04221.1| hypothetical protein TTHERM_00298320 [Tetrahymena thermophila
           SB210]
          Length = 2455

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 19/165 (11%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
             +YE+ K K    D  DL+     LLK+              I+  +IDEVQD   + +
Sbjct: 740 FEYYEKWKLKQQGYDLMDLVNY---LLKEIQNKKCDLPS----IHFTMIDEVQD---LPY 789

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +I   +           + + LF  GD  Q+I    G     +                
Sbjct: 790 AIITLFS---------IVNEQNLFLAGDSAQTIARGVGFRFGDLSNIFTEFSHFFDKKLD 840

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
             +  +L ++FRS   IL + + V S+ E     S D     R  
Sbjct: 841 LPTTRQLTVNFRSHNKILQLSNSVISLIEGLFPTSIDILKKERSN 885


>gi|253731574|ref|ZP_04865739.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus USA300_TCH959]
 gi|253724817|gb|EES93546.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus USA300_TCH959]
          Length = 1158

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 197/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I               F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAETVKDFATTFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRARQDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDL 1020


>gi|58038425|ref|YP_190393.1| ATP-dependent DNA helicase Rep [Gluconobacter oxydans 621H]
 gi|58000839|gb|AAW59737.1| ATP-dependent DNA helicase Rep [Gluconobacter oxydans 621H]
          Length = 161

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 48/177 (27%), Gaps = 46/177 (25%)

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
               G   ++ L E L+                    +      + +   +   V++MT+
Sbjct: 5   AGEDGRTALENLHELLSLANEFSSVE--------ELFDHAALGSESSGDESVGRVKLMTI 56

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE   VFL+     +F  +                                    
Sbjct: 57  HGSKGLEFGHVFLIGWEDTLFPSRTNIDP------------------------------- 85

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                   E  RL YV +TR   ++ +        E+ S      ++   +  +   
Sbjct: 86  -------AEERRLAYVALTRGRQRVSVSWCEFRRGEQASPSCFIDEIPLQARRDGWG 135


>gi|89098321|ref|ZP_01171205.1| hypothetical protein B14911_11732 [Bacillus sp. NRRL B-14911]
 gi|89086870|gb|EAR65987.1| hypothetical protein B14911_11732 [Bacillus sp. NRRL B-14911]
          Length = 773

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-F 229
            K D  I H+ IDE QD S  Q+  I+ L                L  +GD  Q++Y+  
Sbjct: 537 RKQDTGIRHVFIDEAQDYSPFQFAYIKELF-----------PYSRLTLLGDVNQAVYTHS 585

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA                    ++   I L  S+RS+  I+       S  +  +  + 
Sbjct: 586 IGAT------------TLYHGHEEEAKTIVLTKSYRSSRPIVEFTRSFISGGDLVEPFNR 633

Query: 290 DSTTT 294
           +    
Sbjct: 634 EGRLP 638


>gi|167753575|ref|ZP_02425702.1| hypothetical protein ALIPUT_01852 [Alistipes putredinis DSM 17216]
 gi|167658200|gb|EDS02330.1| hypothetical protein ALIPUT_01852 [Alistipes putredinis DSM 17216]
          Length = 948

 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/520 (9%), Positives = 123/520 (23%), Gaps = 81/520 (15%)

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
                       + + +      + +  +       +       ++ +        +V+ 
Sbjct: 414 AEWLACTPLLATLFRSVEGWRGFSDYLLAVIAQIARMPYEDTEARRRVEFLNVISEEVIK 473

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
              N     E     S+   +         I          +++M +   + L+   V L
Sbjct: 474 -LRNSLNNCEIELSISIYTSLLRRHLQTLRIPYE-GEPLEGIQVMGILETRNLDFRNVIL 531

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +      F    +     +P                  ++         +   + E  R+
Sbjct: 532 LSMNDDNFPGSVVTGTSFIPYNLRAAYALPTP-----EHHEGVYAYYFYRLLQRAENVRM 586

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           LY                +  ++    Q  +   +                  + ++  I
Sbjct: 587 LYCA--------------HADDKTTGEQSRYIYQLEY----------ETPFEILRREVGI 622

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL 770
                   P   P + E   K             SP          L             
Sbjct: 623 DVNRMETLPIEVPKQGETAEKLARFLAPDDPVRLSPTAFFRYVACPLRFYFHSVARLEPD 682

Query: 771 ESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKNFITSY------CTKNAKLWPAKEYK 822
           + +  +      G I+H  LQ +    + +      + +                    +
Sbjct: 683 DEISEEVDAPMFGTILHAALQRLYAPFVGKTGYGEALRALTRSSEVEKAVVAAINENYLQ 742

Query: 823 NLLLSITR-----LLENPMMTTAMSCDSYS-------------EVSVSGKINCPKKD--- 861
           ++  ++       LL   ++   +                   E  +  +          
Sbjct: 743 DVEATVEDYSGNLLLVKDIVIRYIRGGVLPYDAAHDDFTVEGLEERIGQEFAFESAGKSL 802

Query: 862 IIISG----RIDQISISQQNIFIFEYKTH--HHVPQEIEHIPYTHIAQ-----LS--IYE 908
            ++ G    RID++      + + +YKT   H   Q +E +      Q     L   +Y 
Sbjct: 803 RVVFGGLADRIDRL--PDGTLRVVDYKTGEPHLDFQGVEALFRGEAKQRQSNILQTLLYS 860

Query: 909 KILKDSYPNKSLVC--LLIYVSEPKVFIIPQNKLNKAFAE 946
            +L   + ++ +     L YV            +++    
Sbjct: 861 MML---FHSRGVDAEPTLYYVRAMHRDDYSSRLVDRELGR 897


>gi|225351771|ref|ZP_03742794.1| hypothetical protein BIFPSEUDO_03368 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158115|gb|EEG71398.1| hypothetical protein BIFPSEUDO_03368 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 1390

 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/392 (14%), Positives = 110/392 (28%), Gaps = 63/392 (16%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINK--KSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
               +S L +   T  F  Q   +   +N+    P  ++ L         + D       
Sbjct: 134 AVSEWSGLVADDSTDAFANQLRDMLARMNEIGAKPQFEDMLIARAASRDGMLDERR---- 189

Query: 120 FKSTLASLTLAKYLNAHYEEAKKK----NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
            +       LA  L   Y EA +        LD   L+I+  + +     +         
Sbjct: 190 -ERLRTQWRLAFALREEYNEAIRSSYPGEYRLDASQLMIDATEAVSGIQEADIA------ 242

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             N +++D+ QDT+L  + ++ +L          H     L  VG+  +++ +F G+ P+
Sbjct: 243 --NMLIVDDFQDTTLAGFALLEAL----------HERGVRLLLVGNPDEAVQTFRGSYPE 290

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            +        +  T  G +   IE       TA        V +             T +
Sbjct: 291 YL------FNQAQTRMGARLERIEGLQ----TAHEGDTAQTVSNQQGVHGDYRTLVATRV 340

Query: 296 RHRSSR--------IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
               +           + G +      +       +      T    S+      S    
Sbjct: 341 SLSIASTESTDVPLPDRPGKMSDMPGAMPIETLPADDTGARVTPADGSVETALYRSSSEE 400

Query: 348 R--IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV 405
              + + I              +R     D+ V+              R       + V 
Sbjct: 401 LDDVVWKIKT---------EHLQRSRVWNDMAVIAHDNATVRAFGERLRAD----GVPVR 447

Query: 406 GNDRFI-LTDHLAIKDLMALGRFILSQEDDLS 436
            +     L D   ++ L AL      +   ++
Sbjct: 448 YSSVTRPLKDEPFVQGLFALIELAELKNQTIA 479



 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/550 (11%), Positives = 132/550 (24%), Gaps = 150/550 (27%)

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              +            R  N+ +D      N+    E +   ++  + + +EQ       A
Sbjct: 689  AEVWQRVALEHSAAGRAANDRLDAAMRLFNYASGGESSGEFAVHTIEAFIEQVRLLTIEA 748

Query: 565  HS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             S          V + T   A G    +VFL       + +   +          D  + 
Sbjct: 749  DSLAHTAPIDQAVTLTTPAGAAGKRWNLVFLPALQQGQWPNLTPRNTLFGGEELADVMLH 808

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
              +  +        D       S      + L V +TRAS+++++    N  N       
Sbjct: 809  GVLSDTIVTPAGRQDAQL---ASVLASEQKSLLVALTRASERVVVSAVLNDDNVPSDFLY 865

Query: 680  TWYDMVYDSFHNDERVKKI-----------KLTNSINKDEWIAYEWSTHHPENTPLEREE 728
             +    +D   + +  ++             L          A       PE++P  R+ 
Sbjct: 866  GYMPECFDRDRDADMERREYASVGGQGDYAGLETDPRGLVAAARSVLASEPEDSPKARDA 925

Query: 729  ------------TIKQLMDEQKIPKKLFSPIKNDINEPYI-------------------- 756
                        T         + + + + ++                            
Sbjct: 926  AEALALLASHGVTAADPDRWPFMGETVEATMRKIAAVMRTGMSDTSESSTSGRNGKSRRS 985

Query: 757  ----LNPSTIDTKGKTN--------LESLLSDNQTFNRGLIIHKLL-----------QVI 793
                L+PS +D                     +   + G +IHK+            +  
Sbjct: 986  DVVTLSPSAVDNLWACPVCWMLENRFSGPRMGSVATSFGSLIHKVAQQATEAGLDMPEHH 1045

Query: 794  FTLPEHKRKNFITSYCTKNAKLW--PAKEYKNLLLSITRLLENPMMTTAMSC-------- 843
              + +    N IT +     K          +       L ++     A+          
Sbjct: 1046 TAISDVDNINAITEWMYAEYKRLCGDFNAIADPAQRYQALKKDEQAQEALRNIATYFVQS 1105

Query: 844  -------------------DSYSEVSVSGKINCPK------------------------- 859
                                +  E+  + K +                            
Sbjct: 1106 NHGDYPIKNNDAFSVGKLTKAEPELKFTAKFDFDDILDAYNAMDGVHAISRNELIAIMGA 1165

Query: 860  -------------KDIIISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHI 901
                           + ++GRID++   +     Q + + +YKT      E         
Sbjct: 1166 LVGGWPETGMSEYLTVRLTGRIDRLERREMADGTQQVRLIDYKTGVSPTGEGLFND---- 1221

Query: 902  AQLSIYEKIL 911
             QL  Y+  L
Sbjct: 1222 LQLVCYQLGL 1231


>gi|242373133|ref|ZP_04818707.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis
            M23864:W1]
 gi|242349084|gb|EES40685.1| ATP-dependent nuclease Rex subunit B [Staphylococcus epidermidis
            M23864:W1]
          Length = 1155

 Score = 63.0 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 106/835 (12%), Positives = 230/835 (27%), Gaps = 181/835 (21%)

Query: 264  FRSTADILTVVDKVF-----SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQH 318
            +R    ++    KV         ++   L    +  + H    I     ++L +   +  
Sbjct: 213  YRMIEALVQHAKKVTVLLTTDGNQDQFSLFRKPSEVLTHLED-IASHLNIELNKTQFNHR 271

Query: 319  DSQCNPQQESWTSYFDSLPQESSASILARRI------AYTISNMIGTDTIFSNGKKRVIQ 372
                N   +   S FD+L         A  I         ++ +     I  + +   ++
Sbjct: 272  YRFENKDLKHLESDFDALQMTPQGHSNAIEILESSSMREEVNEL--ARRILRDVRDHQLR 329

Query: 373  AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQE 432
             +DI +L R      L   +       Y I    + +  ++ H  ++ + +L   I S  
Sbjct: 330  FQDIAILYRDESYAYLFDSIF----PLYDIPFNIDTKKSMSHHPIMEMIRSLIEVIQSNW 385

Query: 433  DDLSFVCMLKSPLF--------------------------NFSEDDIFKICTQRHETETV 466
            +  + + + K+ +                            + ++DIF +          
Sbjct: 386  NINAMLRLFKTDILTSQLKNSSYLIDLLENFALERGVYGKRWLDEDIFNVEQFNKMGRKS 445

Query: 467  YEYIQKFANCGISKFQ---HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN 523
            +    +         +   HVI  +          +    F           +  ++   
Sbjct: 446  HALTPEERETYEEVIRLKNHVIDKVLYFEKAMSEATTVRDFATAFYESMEYFELPNQLMT 505

Query: 524  EVID----------------------VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
            E  +                      +LD+ +      + +    L+     LEQ    +
Sbjct: 506  ERDELDVAGAHQQAEEIDQIWNGFIQILDDLVTVFDTQDMSLKQFLEVFDIGLEQLEFVM 565

Query: 562  KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                    ++V I T+  AK      V++V                I             
Sbjct: 566  IPQT---LDQVSIGTMDLAKVDNKQHVYMVGMNDGSLPQPVSSSSLITDEE--------- 613

Query: 622  IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI----ICKHSNTSNEKKSN 677
              +     N   +L         +E   + Y+ MTRA  ++     +  +S    E    
Sbjct: 614  --KKYFEQNADIELSPTSDILQMDEAF-VCYIAMTRARQKVTFSYSLMGNSGDEKEISPF 670

Query: 678  QRTWYDMVYDSFHNDERVKKIKLTNSI------NKDEWIAYEWSTHHPENTPLEREETIK 731
                 DM +     +   +  +   S+       K E      +    E+  +   +  +
Sbjct: 671  LSQIKDMYHHLEITNIHQEHEEQPISLMQHVHQTKIELFDALRAWLDQEDVDIRWLDAYQ 730

Query: 732  QLMDEQKIPKKLFSPIKNDINEPYIL-----------------NPSTIDTKGKTNL---- 770
             + D++++ + L   I +   +   +                 + S  +   +       
Sbjct: 731  VIRDDERLNRGLDYLITSLTYDNETIQLNESLTQQLYGKTINASVSRFEGYQQCPFKHYA 790

Query: 771  -------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN 823
                   E    + Q F+ G I H +L+ I    E        +   K  +    +  + 
Sbjct: 791  SHGLRLNERTKYELQNFDLGDIFHSVLKHISDRVEGD----FKNLDRKKIRALTEEALEM 846

Query: 824  LLLSIT-RLLENPMMTTAMSCDSYS-------------------EVSVSGKINCPKKD-- 861
            +L  +   LL +      +S    S                               K+  
Sbjct: 847  ILPKVQFNLLNSSAYYKYLSRRIGSIVETTLSALKYQTGFSKFVPQRFETGFRKSPKNKE 906

Query: 862  --------------IIISGRIDQIS---ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQ 903
                          I I G+ID+I        +   I +YK+       ++     +  Q
Sbjct: 907  ELVAQPLHTKQGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSS-TSSATLDLTKVYYGLQ 965

Query: 904  LSI--YEKIL----KDSYPNKSLV-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
            + +  Y  I+    +       +    L+Y  V EP++       I + KL+K  
Sbjct: 966  MQMMTYMDIVLQNQERLGLTDIVKPGGLLYFHVHEPRIKFENWSKIDEEKLDKEL 1020


>gi|254426317|ref|ZP_05040033.1| hypothetical protein S7335_999 [Synechococcus sp. PCC 7335]
 gi|196187731|gb|EDX82697.1| hypothetical protein S7335_999 [Synechococcus sp. PCC 7335]
          Length = 234

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 8/169 (4%)

Query: 780 FNRGLIIHKLL----QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
              G  +H  L    Q            ++      N      K+  +    + +  E  
Sbjct: 10  AALGTALHAALAQFYQDWHYQEPLPSDAWLQQCWENNNAGLTDKQLADSWQLMQQYYERE 69

Query: 836 MM-TTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
           ++    M     +E  + G +     +  + GR D+I      + + +YK+         
Sbjct: 70  LVPVGTMQRPLATEGRLQGTLQANDIEFKLVGRYDRIDFVDGGLELIDYKSAKSPQLPSA 129

Query: 895 HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA 943
           +       QL +Y   L+  Y        L+++           +++K 
Sbjct: 130 NEID---LQLGLYYLALEQRYGQSLKQMTLLFLRTGDRVSYEATEVHKQ 175


>gi|119384179|ref|YP_915235.1| pathogenesis-related protein [Paracoccus denitrificans PD1222]
 gi|119373946|gb|ABL69539.1| pathogenesis-related protein [Paracoccus denitrificans PD1222]
          Length = 650

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 79/545 (14%), Positives = 144/545 (26%), Gaps = 79/545 (14%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              L   ++I      L + +    I   +      ILIDE QDT       ++ L E  
Sbjct: 171 RDALQHTEVIALAAHFLTESETFQNI---VLARYPFILIDESQDT-------MKPLMEAL 220

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
              +  H     L  +GD  Q IY+             R   +R  +  Q        ++
Sbjct: 221 LTFEARHRGRIALGLLGDTMQRIYTDG----------LRDLDQRVGDFSQPAK----QMN 266

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            RS   I+ + + +    +  Q            + +R  + G         S    +  
Sbjct: 267 HRSRKRIVDLANSIRRDDDGRQ------------QRAREDKPGGTVRVFIAPSDGTDRAV 314

Query: 324 PQQESWTSYFDSLPQESSASILARRIAY-TISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
            +  +      +     SA   A  I   TI   +    +  +     +   D     + 
Sbjct: 315 FEASA--RAEMARITGDSAWQNAEAIKTLTIERHMAAARLGFSELFEPLSKPD-----KL 367

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
           +      T     L     + +V   R          D  A    +           + K
Sbjct: 368 KDGFRDGTLPAMRLFTHRVLPLVTAQRNG--------DAFAAMAVLRDGS-----PLVDK 414

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
             +          +   R     +        +   +    V+               HD
Sbjct: 415 RGIREGGGGQATGLDAARAGVAALMTLFNDEPDPSCADVLAVVAEHRLF-------PIHD 467

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEF-LNFTLRNEQNSYSSLQELISELEQYPPTI 561
                L       Q ++    E+  + DE  L           +  +     LE     +
Sbjct: 468 QLRACLPDDNLVAQDMADILAELDPLFDELDLTTPEGTPPAETTITEAWTQALEARFSQV 527

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            R  +   +     T    KGLE P V ++                   +          
Sbjct: 528 ARYLAYVEDRSPYGTHQGVKGLEFPRVMVI--------------ADDAHTRFKGLASYET 573

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           +   K           + +++T E   RLLYV  TRA + L +  +S   +  +    + 
Sbjct: 574 LFGVKPLGPAAQKKADNGEETTIERTRRLLYVTCTRAEESLALVLYSEAPDTIRRFLISN 633

Query: 682 YDMVY 686
             M  
Sbjct: 634 GWMAE 638


>gi|302551777|ref|ZP_07304119.1| helicase [Streptomyces viridochromogenes DSM 40736]
 gi|302469395|gb|EFL32488.1| helicase [Streptomyces viridochromogenes DSM 40736]
          Length = 761

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 88/295 (29%), Gaps = 47/295 (15%)

Query: 3   NRFGLSLNESYELIYKDLWPL--------PYFQVSDINKYVSLSMETGNPTILKKAQTLQ 54
            R  L   E    I + +           P  +   ++     S   G  +  + A  L+
Sbjct: 359 RRLELEAEE-LAGIRRAVLGGTAPVNLLRPRARKLLLDALWERSGAAGRHSDPELAAELR 417

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            +       E        F+         +    +     D +   + ++        R 
Sbjct: 418 SSFDEDITSE------DSFIAFLDAWWPELTPAAVLAAMADERRLGRWARRIMNPGEVRR 471

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAK------KKNCVLDFEDLIINTNDLL----KKRD 164
               + +   +   +A  +    +         +K   LD  D +    +L+    + + 
Sbjct: 472 VARSLRRDGSSVHDIA--MLDELQAILGAPARPRKKRDLDPLDQLTGLEELMPVREESQR 529

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             A        E  H+++DE QD + +QW ++                  T   VGD  Q
Sbjct: 530 ERAERLAAERTEYAHVIVDEAQDLTPMQWRMV-----------GRRGRHATWTVVGDPAQ 578

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           S      ++P      +           +     EL +++R+ A+I  +  KV +
Sbjct: 579 S----SWSDPDEAAEARDE-----ALGTRPRRRFELTVNYRNPAEIAELASKVLA 624


>gi|220921600|ref|YP_002496901.1| double-strand break repair protein AddB [Methylobacterium nodulans
           ORS 2060]
 gi|219946206|gb|ACL56598.1| double-strand break repair protein AddB [Methylobacterium nodulans
           ORS 2060]
          Length = 1037

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/503 (11%), Positives = 123/503 (24%), Gaps = 56/503 (11%)

Query: 449 SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL-IHIAQFCSPHDFFTLI 507
           +E+       +R  TE  ++      +     F+       +    +      H     +
Sbjct: 492 TEERPHDPRARRRLTEADWDAAADLVDRLSVAFRDFFADEDDAVRDLVGLARAHRTTCDL 551

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
           L    G           V+D L  F +  L           +  +           A   
Sbjct: 552 L--LDGPDAVEDEASVAVLDGL--FDDLALAETGLLAGRFSDYPAFFTALARERVVAERR 607

Query: 568 N--HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
              H  +RI+ +  A+ L    V +      V+  K      +   +    G+     + 
Sbjct: 608 ALPHPRLRILGLLEARLLSVDRVVVAGLDEGVWPPKAETDAFLNRPMRGAVGLSPPERRL 667

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
               +     +                  +TRA  +                + +     
Sbjct: 668 GQTAHDFVQALGCPDA------------VITRAHKR----------------EGSPMVPS 699

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
                    + +   +  +   E      +       PL           +  +  +  S
Sbjct: 700 RFLQRLRAFMGEEAWSARVRAGERFRALAAALDRGTEPLPPRLARPAPKPDPALFPRSLS 759

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVIFTLPEHKR 801
             + +               G   LE +       +RG I+H +L    Q          
Sbjct: 760 VTEVETLVRDPYAIFARHVLGLDPLEPVAVQPSASDRGTIVHDVLGGFAQRFPEALPADP 819

Query: 802 KNFITSY-------CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
              +                   A+ +          L             ++E     +
Sbjct: 820 LTPLLDLAVNAFAPIADAYPELYAEWWPRFERMAGAFLAWEAERRPGLARVHAETFGRWR 879

Query: 855 INC-PKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
           I   P +D  +  R D+I ++      I ++KT        + +      QL++ E  + 
Sbjct: 880 IPIGPAEDFTLRARADRIEVTRGGGHVIVDFKTGQPP--SAKEVFAGFAPQLTL-EAAML 936

Query: 913 DSYPNKSLVCL-----LIYVSEP 930
            +   + L        L+YV   
Sbjct: 937 RAGGFRDLGAAAAVPDLLYVRAG 959


>gi|255528277|ref|ZP_05395092.1| putative helicase [Clostridium carboxidivorans P7]
 gi|255508029|gb|EET84454.1| putative helicase [Clostridium carboxidivorans P7]
          Length = 748

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            EI +++IDE QD + +Q+E+   L                +  +GD  QSI  F     
Sbjct: 517 SEIKYVIIDEAQDYTPLQYEIFYQLF-----------KHANITILGDLNQSINPFM--NV 563

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
                   I  K  T       II L  S+RST +I     K+ + 
Sbjct: 564 GDYSNISHIFPKDNT------CIINLSKSYRSTMEITKFSRKLLAK 603


>gi|224541821|ref|ZP_03682360.1| hypothetical protein CATMIT_00993 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525244|gb|EEF94349.1| hypothetical protein CATMIT_00993 [Catenibacterium mitsuokai DSM
           15897]
          Length = 853

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 21/221 (9%)

Query: 727 EETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLS 775
           E+ I +L+D  K+       IK+       ++ S ++T  K              E    
Sbjct: 490 EDPINRLIDHYKMTSNQPEFIKDTNKLGRGVSVSRLETYNKCPFSYYIKYGLKITEKRED 549

Query: 776 DNQTFNRGLIIHKLLQV-IFTLPEHKRKN--FITSYCTKNAKLWPAKE--YKNLLLSITR 830
             Q+   G + H L++  +       ++   +I     +     P  +    NL+  +  
Sbjct: 550 TLQSSELGSLCHYLMEKCLDDESLVDQEAKHYIEENLKEKYDDHPMNQYFIDNLIKDMKM 609

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
            ++  ++   +    Y  VS   +I+    D+  SG ID++        I +YK+     
Sbjct: 610 TIK--IIQKQLQLGGYVPVSKEKEISGQIGDVPFSGIIDRVDEFGNYARIVDYKSS-SKE 666

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
            ++         Q+ +Y  +L            ++Y +  K
Sbjct: 667 IDLNLAMQGFNIQMLVYLDMLCKQENKD--RAGMLYFNMKK 705


>gi|149927014|ref|ZP_01915272.1| RecB family exonuclease-like protein [Limnobacter sp. MED105]
 gi|149824235|gb|EDM83455.1| RecB family exonuclease-like protein [Limnobacter sp. MED105]
          Length = 865

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/649 (9%), Positives = 167/649 (25%), Gaps = 112/649 (17%)

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI-LA 346
             ++   +            V     +      Q              + Q +      A
Sbjct: 208 DGETVPGLWLELFYPEVPVQVFRLSAIEGPQPWQQLGATRFNIQPSPVVLQVAPDETTQA 267

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
           ++ A+ I   +  D +             + VL R      L       L  D  + V  
Sbjct: 268 QQAAHQILEWLREDPVTEIA---------VAVLDR------LAARRLVGLLADIGVLVDD 312

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETV 466
              + L+          L +  ++Q         +  P      + +             
Sbjct: 313 RTGWRLSTSNVAGWFDHLLQQFVAQGQLTD----IVQPFTGLPLEHLEP----------- 357

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
           + + +  +   ++++      + E   +     P +    +L      +Q  ++   +  
Sbjct: 358 WAFGKTGSRHPLAQWAGAFLALFEKHGLDTALQPDEAGQQLLTVLGLMRQVPAQTEFDAH 417

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
           +                       ++    +  + +       + VR++ + + +  +  
Sbjct: 418 E----------------------FLAAWRSWAESQRFRPLDIESPVRMVPLLSTRMRQFK 455

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            V ++      F       +    +       P               L +  K S   E
Sbjct: 456 RVLVLGCAQSHFQESPPGLLPPAVAQELGFPGP--------------RLARIQKISALYE 501

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
                   +      L+         E    +  W D+V     +  +    +   + + 
Sbjct: 502 LL------LHSNEVTLVHSAQVAGKPEMLLPELMWLDIVLRDSESHAQPWASQWYRAPSD 555

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
            E    E      + T L    +I + +    +       ++  +               
Sbjct: 556 FEIEVREAPEQALQLTALSDSGSIPESLRVTALDDWKACRLRFGLK-------------- 601

Query: 767 KTNLESLLSDNQTF-----NRGLIIHKLLQV------IFTLPEHKRKNFITSYCTKNAKL 815
              L      ++        RG+ +HK+L+       +   P ++ + +  +   +   +
Sbjct: 602 -HALPWPAQRDEGAMRYEQLRGIFVHKVLEKTAQYMALPGQPVNQLQAWKQTLLDQAQLV 660

Query: 816 WPAKEY-------------KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI 862
           W   E                ++  +   L    +       +  ++  +  +      +
Sbjct: 661 WNKLELDDRATVYPFLKFFDQIVPRLAGKLMERQIQGWQFKGAEQQIEHTLVLQPSGASL 720

Query: 863 IISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            + GR+D++    + + I + K  +    +          QL  Y+ +L
Sbjct: 721 ALKGRVDRLDTRGEALAISDIKFTNPAVLKKRLADPLSQPQLPAYQAML 769


>gi|315658705|ref|ZP_07911575.1| ATP-dependent nuclease subunit B [Staphylococcus lugdunensis M23590]
 gi|315496336|gb|EFU84661.1| ATP-dependent nuclease subunit B [Staphylococcus lugdunensis M23590]
          Length = 1155

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 82/733 (11%), Positives = 192/733 (26%), Gaps = 165/733 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q     + A  I   ++ +     I    +++ ++ +DI +L R         +L   + 
Sbjct: 297  QGHIQILEAASIREEVNEVARQ--IIKATREQHLRYQDIAILYR----DESYAYLLASIL 350

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL------------ 445
              + I    + +  +T H  ++ + +L   + +     + + + K+ +            
Sbjct: 351  PQFDIPFHIDIKKSMTHHPIMEMVRSLIEVVRTNWSTDAMLRLFKTDILTYQIKNSSYLI 410

Query: 446  ---------FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
                        +    F    +       ++ + +  +    + Q   + + +L     
Sbjct: 411  DLLENFVLERGITGKRWFD---ESRFQIEHFQKMGRKEHQLTPEEQETFEKVVQLKDDVV 467

Query: 497  F------------CSPHDFFTLILGAKKG----------RQQFISRFGNEVIDVLDEF-- 532
                          +  D+ T    + +           R    +    E  + +D+   
Sbjct: 468  HKILYFEQAMNDAHTVIDYATAFYESMEYFELPNQLMTIRDTLEADHRYEEAEEIDQIWN 527

Query: 533  -----LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESP 586
                 L+  +     +  SLQ     L+     ++ A      ++V I ++  AK     
Sbjct: 528  GIIQILDDLVTVFGTTEMSLQRFNEVLDIGLEQLEFAMIPQTLDQVSIGSMDLAKVDNKA 587

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
             VF+V     V          I               +         +L         +E
Sbjct: 588  KVFMVGMNDGVIPQPIASTSLISDEE-----------KKFFETQTHIELSPTSDVLQMDE 636

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
               + Y+ MTRA+ Q+        ++  +     +   +   + N +      +      
Sbjct: 637  AF-VCYIAMTRATQQVTFSYSLMGNSGDEKEISPFLSQIKQLYTNMQIDNLNYVHAQQPL 695

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--------- 757
                    +  H         +            + +    + +    Y+L         
Sbjct: 696  LLVEHGHQTKIHLFEALRAWLDDEIVADTWIDTYQVMRDDAQLNDGLDYLLTSLTYDNHT 755

Query: 758  ------------------NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHK 788
                              + S  +   +              E      Q F+ G I H 
Sbjct: 756  VQLSDPLAQQLYGKAINASVSRFEGYQQCPFKHYASHGLRLNERTKYQLQNFDLGDIFHS 815

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYS 847
            +L+ I                 K  K   ++  + +L  +   LL +      +S    +
Sbjct: 816  VLKYISDRVNGD----FKHLNAKTIKQLTSEALEEILPKVQFNLLNSTAYYRYLSQRIGA 871

Query: 848  -------------------EVSVSGKI---------------NCPKKDIIISGRIDQIS- 872
                                                            I I G+ID+I  
Sbjct: 872  IIETTLGALKYQSSYSKFKPQRFETGFRRKPHQDDLMAESLQTTQGIPINIRGQIDRIDT 931

Query: 873  --ISQQNIF-IFEYKTHHHVPQEIEHIPYTH---IAQLSIYEKIL----KDSYPNKSLV- 921
                 Q+   I +YK+          +   +     Q+  Y  I+    +    + ++  
Sbjct: 932  YTEDDQSYVNIIDYKSSK--ESAKLDLKKVYYGLQMQMMTYMDIVLQNHERLGLSDTVKP 989

Query: 922  CLLIY--VSEPKV 932
              L+Y  V EP++
Sbjct: 990  GGLLYFHVHEPRI 1002


>gi|284794839|gb|ADB93765.1| gp72 [Mycobacterium phage RedRock]
          Length = 302

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 13/107 (12%)

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           E+S S  ++ P   I + G ID + +    + + +YKT +    +          QL +Y
Sbjct: 170 ELSFSIVLDTPLGPIRVRGYIDAVVVVNGELRVRDYKTGNKPGDD---------FQLGVY 220

Query: 908 EKILKDSYPNKSLVCLLIYVSEPK----VFIIPQNKLNKAFAEISTK 950
              +   Y  K+      +++  K    V   P +        I+ +
Sbjct: 221 ALAVAMKYGVKAPTTGDYFMAGKKGKKAVITAPYDLTEWTAERIAER 267


>gi|296448613|ref|ZP_06890483.1| double-strand break repair protein AddB [Methylosinus trichosporium
           OB3b]
 gi|296253885|gb|EFH01042.1| double-strand break repair protein AddB [Methylosinus trichosporium
           OB3b]
          Length = 520

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/278 (10%), Positives = 75/278 (26%), Gaps = 26/278 (9%)

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            ++++ +            R    +   +  N    K                       
Sbjct: 170 REVVLSRSRKRDGSPTVVSRFVARLAALAGENFSACKARGDRARALAAALDHPAEIRAAA 229

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
              P    E     +   +I K    P          L P          L  L ++   
Sbjct: 230 RPLPRPPVELRPVRLSVTRIEKLRRDPYSVFAEHVLRLAP----------LPPLGAEKGA 279

Query: 780 FNRGLIIHKLLQV---------IFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSI 828
              G+ +H  L           +      +      +   +        A ++  L   +
Sbjct: 280 REIGVAVHAALAKFSEAHPKGPLPEDASERLLILARAELAEFLDDPSFIAFQWPRLETGL 339

Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII-ISGRIDQISIS-QQNIFIFEYKTH 886
              L        ++ +++ E+    ++      +  +S   D+I +      F+ +YKT 
Sbjct: 340 RHALAFERERRKIASETFIEIRGEWRLPLADGGVFTLSCVADRIELDAAGAAFVVDYKTG 399

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKD-SYPNKSLVCL 923
                 ++ +      QL++   +++  ++P   +  +
Sbjct: 400 TPP--SVKQVDAGFSPQLTLEAAMIEAGAFPPIGVRAV 435


>gi|270690247|ref|ZP_06222893.1| ATP-dependent DNA helicase rep [Haemophilus influenzae HK1212]
 gi|270316110|gb|EFA28112.1| ATP-dependent DNA helicase rep [Haemophilus influenzae HK1212]
          Length = 209

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 44/213 (20%)

Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
           +    +E IQ+         Q   ++I EL    Q   P      +L      +      
Sbjct: 22  DAIFEFELIQRITPKAYDSLQKFGRWIVELNDEIQRSEPERAVRSMLSVIHYEEYLYEYA 81

Query: 522 GNEVID-----VLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
            +          +    ++        E N   +L ++++ L       +     + ++V
Sbjct: 82  TSPKAAEMQSKNVATLFDWVADMLKGDETNEPMNLNQVVTRLTLRDMLERSEDDDDSDQV 141

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           ++MT+H +KGLE P V+L+     +  H+                               
Sbjct: 142 QLMTLHASKGLEFPYVYLIGMEEGILPHQTSID--------------------------- 174

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
                   +   EE  RL YVG+TRA  +L   
Sbjct: 175 --------EDNVEEERRLAYVGITRAQKELTFS 199


>gi|229523603|ref|ZP_04413008.1| ATP-dependent DNA helicase PcrA [Vibrio cholerae bv. albensis
           VL426]
 gi|229337184|gb|EEO02201.1| ATP-dependent DNA helicase PcrA [Vibrio cholerae bv. albensis
           VL426]
          Length = 620

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 34/198 (17%)

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           K +   +  E++I  T  LL +  +   I          +LIDE QDT        + L 
Sbjct: 168 KVERGTVSHEEVIQITATLLNESHLLQNILT---NRYPILLIDESQDT-------RKELM 217

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
           E     ++ + S  +L   GD  Q IYS            K   +       +  S I  
Sbjct: 218 EALIRTQSLNRSKFSLGLFGDLMQRIYSGG----------KDDLETALPEDWKTPSKI-- 265

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
            +++RS   I+++++ +            +     +         G V+L+       + 
Sbjct: 266 -VNYRSPKRIVSLINSI-----------RNEDDGKKQEPKAEAIQGRVRLFIVDSVSANK 313

Query: 321 QCNPQQESWTSYFDSLPQ 338
                   +     +   
Sbjct: 314 FEVEDNVRYRMSSIADDA 331


>gi|148807299|gb|ABR13373.1| hypothetical protein [Pseudomonas aeruginosa]
          Length = 493

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 54/180 (30%), Gaps = 30/180 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q  + + +DE QD + +  ++              H     +  VGD  Q +Y F GA
Sbjct: 187 LSQRFDCMFLDEGQDINPVIADI-------------AHWQRIKMAIVGDPHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           E               ++         L  S+R    I  V + + S     + L     
Sbjct: 234 E-----------DALNSDWMVGAEEHYLTQSWRFGPAIAHVANIILSYKGETRKLQGLGP 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES------WTSYFDSLPQESSASILA 346
            T+  +S          +   V+   ++     + +      W    DS        + A
Sbjct: 283 QTLVKKSLPADLPHRTFIHRTVIGVIENALQRVRNNPAPKFYWVGGIDSYSLRDLEDLYA 342


>gi|294629630|ref|ZP_06708190.1| I DNA or RNA helicase [Streptomyces sp. e14]
 gi|292832963|gb|EFF91312.1| I DNA or RNA helicase [Streptomyces sp. e14]
          Length = 811

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 99/337 (29%), Gaps = 43/337 (12%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
              P  +   ++     S   G  +  + A  L+ +       E        FL      
Sbjct: 420 LLRPRARKLLLDALWEKSGAAGRHSDPELAAELRSSFDEDVTSE------DSFLAFLDAW 473

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
              +  + +     D +   + ++        R     + +   +   +A  +    +  
Sbjct: 474 WPELTPRGVLAAMADERRLGRWARRVLNPGEVRKVARSLRRDGYSVHDIA--ILDELQAI 531

Query: 141 K------KKNCVLDFEDLIINTNDLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                  +K   LD  D +    +L+    + +   A    +   E  H+++DE QD + 
Sbjct: 532 LGAPARPRKKRELDPLDQLTGLEELMPVREESQRERAERLAQERVEYAHVIVDEAQDLTP 591

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRI-NQKRAT 249
           +QW ++                  T   VGD  QS      ++P      +      R  
Sbjct: 592 LQWRMV-----------GRRGRHATWTVVGDPAQS----SWSDPDEAAEARDEALGTRLP 636

Query: 250 NAGQKF--------SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301
            +               EL +++R+ A+I  +  KV ++       +  +  +   +   
Sbjct: 637 GSAHAGAASRSSRARRFELTVNYRNPAEIADLAAKVLALAM-PGAKAPSAVRSTGLKPRF 695

Query: 302 IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
               G++    +  ++   +            +   +
Sbjct: 696 AVVAGSLGATVRAEAEALLERVEGTVGVVVAMNRREE 732


>gi|289551203|ref|YP_003472107.1| ATP-dependent nuclease, subunit B [Staphylococcus lugdunensis
            HKU09-01]
 gi|289180735|gb|ADC87980.1| ATP-dependent nuclease, subunit B [Staphylococcus lugdunensis
            HKU09-01]
          Length = 1155

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 82/733 (11%), Positives = 193/733 (26%), Gaps = 165/733 (22%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            Q     + A  I   ++ +     I    +++ ++ +DI +L R         +L   + 
Sbjct: 297  QGHIQILEAASIREEVNEVARQ--IIKATREQHLRYQDIAILYR----DESYAYLLASVL 350

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL------------ 445
              + I    + +  +T H  ++ + +L   + +     + + + K+ +            
Sbjct: 351  PQFDIPFHIDIKKSMTHHPIMEMVRSLIEVMRTNWSTDAMLRLFKTDILTYQIKNSSYLI 410

Query: 446  ---------FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQ 496
                        +    F    +       ++ + +  +    + Q   + + +L     
Sbjct: 411  DLLENFVLERGITGKRWFD---ESRFQIEHFQKMGRKEHQLTPEEQETFEKVVQLKDDVV 467

Query: 497  F------------CSPHDFFTLILGAKKG----------RQQFISRFGNEVIDVLDEF-- 532
                          +  D+ T    + +           R    +    E  + +D+   
Sbjct: 468  HKILYFEQAMNDAHTVIDYATAFYESMEYFELPNQLMTIRDTLEADHRYEEAEEIDQIWN 527

Query: 533  -----LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESP 586
                 L+  +     +  SLQ     L+     ++ A      ++V I ++  AK     
Sbjct: 528  GIIQILDDLVTVFGTTEMSLQRFNEVLDIGLEQLEFAMIPQTLDQVSIGSMDLAKVDNKA 587

Query: 587  VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
             VF+V     V          I               +         +L         +E
Sbjct: 588  KVFMVGMNDGVIPQPIASTSLISDEE-----------KKFFETQTHIELSPTSDVLQMDE 636

Query: 647  YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
               + Y+ MTRA+ Q+        ++  +     +   +   + N +      +      
Sbjct: 637  AF-VCYIAMTRATQQVTFSYSLMGNSGDEKEISPFLSQIKQLYTNMQIDNLNYVHAQQPL 695

Query: 707  DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL--------- 757
                    +  H         +            + +    + +    Y+L         
Sbjct: 696  LLVEHGHQTKIHLFEALRAWLDDEIVADTWIDTYQVMRDDAQLNDGLDYLLTSLTYDNHT 755

Query: 758  ------------------NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHK 788
                              + S  +   +              E      Q F+ G I H 
Sbjct: 756  VQLSDQLAQQLYGKAINASVSRFEGYQQCPFKHYASHGLRLNERTKYQLQNFDLGDIFHS 815

Query: 789  LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYS 847
            +L+ I                 K  K   ++  + +L  +   LL +      +S    +
Sbjct: 816  VLKYISDRVNGD----FKHLNAKTIKQLTSEALEEILPKVQFNLLNSTAYYRYLSQRIGA 871

Query: 848  -------------------EVSVSGKI---NCPKK------------DIIISGRIDQIS- 872
                                              +             I I G+ID+I  
Sbjct: 872  IIETTLGALKYQSSYSKFKPQRFETGFRRKPHEDELMAESLQTTQGIPINIRGQIDRIDT 931

Query: 873  --ISQQNIF-IFEYKTHHHVPQEIEHIPYTH---IAQLSIYEKIL----KDSYPNKSLV- 921
                 Q+   I +YK+          +   +     Q+  Y  I+    +    + ++  
Sbjct: 932  YTEDDQSYVNIIDYKSSK--ESAKLDLKKVYYGLQMQMMTYMDIVLQNHERLGLSDTVKP 989

Query: 922  CLLIY--VSEPKV 932
              L+Y  V EP++
Sbjct: 990  GGLLYFHVHEPRI 1002


>gi|21282577|ref|NP_645665.1| hypothetical protein MW0848 [Staphylococcus aureus subsp. aureus MW2]
 gi|297208399|ref|ZP_06924829.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ATCC 51811]
 gi|300912475|ref|ZP_07129918.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            TCH70]
 gi|81762666|sp|Q8NXF0|ADDB_STAAW RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|21204015|dbj|BAB94713.1| MW0848 [Staphylococcus aureus subsp. aureus MW2]
 gi|296887138|gb|EFH26041.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ATCC 51811]
 gi|300886721|gb|EFK81923.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            TCH70]
          Length = 1158

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 197/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I               F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               VFLV                I                 K      +  +       Q
Sbjct: 586  KQHVFLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + Y+ MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYIAMTRARQDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDL 1020


>gi|295085344|emb|CBK66867.1| Superfamily I DNA and RNA helicases [Bacteroides xylanisolvens
           XB1A]
          Length = 687

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 34/172 (19%)

Query: 142 KKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           +KN +L++ DL  +   +  L   +  +++         H+LIDE+QD S IQ++VI+ L
Sbjct: 437 RKNRILEYADLAPLAYLHIALDGNNAQSYV--------KHLLIDEMQDYSPIQYKVIQKL 488

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                        P     +GD  QS+  +  +    + +                 I++
Sbjct: 489 Y------------PCRKTILGDASQSVNPYGSSTAGMIQKA-----------FVTGEIMK 525

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGL-SEDSTTTIRHRSSRIGQVGTVQL 310
           L  S+RST +I +   K+ S  E    +   +    +  +S+     G   L
Sbjct: 526 LCKSYRSTFEITSFAQKIQSNNELEPIMRHGEHPKILPFKSTEEEIQGIADL 577


>gi|298248267|ref|ZP_06972072.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297550926|gb|EFH84792.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 695

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/341 (11%), Positives = 98/341 (28%), Gaps = 46/341 (13%)

Query: 43  NPTILKKAQTLQQASQTQC--IEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL-KEK 99
           + T L     L++A        ++    L    +         +  +   +   D+  + 
Sbjct: 296 STTDLIARDILKEAGIQTEIIDQQELDDLLLQAMQDASYTGSVVQQKAQRQFIKDVNFDY 355

Query: 100 LKKSQDEF-----IKIRDRFNTYKMFKSTLASLTLAKY----LNAHYEEAKKKNCVLDFE 150
           L +  +       ++  +++         ++   L +     ++   E+   +   +   
Sbjct: 356 LLQEINRVIVANQLESLEQYLAAPRPGRQMSLSALQRRAVWSVHEKLEQLLARERKI--- 412

Query: 151 DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
                T   L+ +      + +I ++   +++DE QD       ++  L +         
Sbjct: 413 -----TWHQLRTQAEKLVAQRQITRQYEAVIVDEAQDLDPSALRLMTQLCK--------- 458

Query: 211 SSPRTLFAVGDEKQSIYS--FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
            +PR LF   D  QSIY   F  +   + L+ +                  L  ++RST 
Sbjct: 459 -TPRGLFITADANQSIYGSHFTWSSIHKDLQFR-------------GRTGILHANYRSTR 504

Query: 269 DILTVVDKVFSI-PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           +I             ++  +  +          R       +          ++   +  
Sbjct: 505 EIGEAAQSYLQQGILDSDPVEREYIYNGPLPIVRNVNNDQEEAQLLASFLTAARRTYRLG 564

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKK 368
             +       ++   S+ A    Y I     +       + 
Sbjct: 565 IGSCAILCPNEKVGRSLAAALERYQIEAAFMSGQYLDLKRP 605


>gi|207093266|ref|ZP_03241053.1| hypothetical protein HpylHP_10921 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 198

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 47/167 (28%), Gaps = 22/167 (13%)

Query: 798 EHKRKNFITSYCTKNAKLWPAKEYKNLLL--SITRLLENPMMTTAMSCDSYSEVSVSGKI 855
            H  +  +         + P +    L+    I                    + +    
Sbjct: 3   PHALEERLIQLLETRENITPKERLDTLIALKKIQAFYLKE--KERFKAKIKI-LDLEKSF 59

Query: 856 NCPKKDIIISGRIDQISIS-QQNIFIFEYK--TH------------HHVPQEIEHIPYTH 900
               + +   GRID+I  +    I + +YK  +                P EI  I   +
Sbjct: 60  ETTIQGVAFKGRIDRIDKTADNEIILLDYKFKSDLKLDNMSKTQREGLSPIEIAQISTDY 119

Query: 901 IAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
             Q++IY   LK+      +      + + ++    +  L      +
Sbjct: 120 --QMAIYAFTLKNLGYKGPIKAFFYDLRKGELVEEDELTLQAKMDHL 164


>gi|154488223|ref|ZP_02029340.1| hypothetical protein BIFADO_01797 [Bifidobacterium adolescentis
           L2-32]
 gi|154083374|gb|EDN82419.1| hypothetical protein BIFADO_01797 [Bifidobacterium adolescentis
           L2-32]
          Length = 1359

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 73/665 (10%), Positives = 173/665 (26%), Gaps = 100/665 (15%)

Query: 92  KSPDLKEKL-KKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKK----NCV 146
             P+L++ L  ++ DE   + +R       +       LA  L A Y +A  +       
Sbjct: 166 AKPELEDALISRAADEHGTLDERR------ERLRVQWRLAFALRAEYNQAINEAYPDQYR 219

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           LD   L+I+    + + + S             +++D+ QD +L  ++ + +L       
Sbjct: 220 LDASQLMIDAAAAVNEAETSDLP--------KLVIVDDFQDATLAGFDFLTAL------- 264

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               +    L  VG+  +++ +F G+ P+                               
Sbjct: 265 ---RNRGVRLLLVGNPDEAVQTFRGSYPEY------------------------------ 291

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
                     +F++ ++  G                      ++   + S   +      
Sbjct: 292 ----------LFNMAQSRLGARLVRLEPSHMAEGTDLAAVASRVSLTIASTESTDDALAN 341

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVLVRKRKD 385
                   ++P+    S+ A     T+  +      I +   +      D+ V+      
Sbjct: 342 RPGKMPAIAIPETRDGSLEAAMYRSTVEELDDVVWKIKTEHLEHGRDWNDMAVIAHDNAT 401

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLSFV------ 438
                   R       + V  +     L D   ++ L ++      +   ++        
Sbjct: 402 VRTFGERLRAD----GVPVRYSSVTRPLKDEPFVQGLFSMIELAELKRQGIATSSMNLDT 457

Query: 439 ----------CMLKSPLF---NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVI 485
                      ++ SPL          +  + +  +   ++   +        +      
Sbjct: 458 AGAYVRSRVASIMNSPLITTPGERPARLCVVESAMNALGSLATVLHDDTADPTTSDTSGR 517

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYS 545
             + +LI          F T  + A     +  +  G   ID  D  +      E     
Sbjct: 518 ALLPQLIDD-WNDYVETFHTARVAASASDAENAADMGLPAIDTDDRLMTGERAAEDADEP 576

Query: 546 SLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           S       +        R   A  + +                 L  T       +    
Sbjct: 577 SFGMNALYILLLEGDTDRVLDAIASVLGRKDPQAQAFAR-----LWKTLDDTLRSEARLT 631

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
            H    + D         +   +  + ++          +   RL        S+ +   
Sbjct: 632 SHEPQYMLDCAWQAFGKAEIWQKTALRNNAEGRAANDRLDTAMRLFSYASGGESNGVTAA 691

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              +   E+        D +  +   D+ V       +  K   + +  +    +   L 
Sbjct: 692 HTIDAFIEQVRALAIEADSLAHTAPIDQAVTLTTPAGAAGKHWKLVFMPAFQQGQWPNLA 751

Query: 726 REETI 730
              T+
Sbjct: 752 PRNTL 756



 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 69/637 (10%), Positives = 148/637 (23%), Gaps = 171/637 (26%)

Query: 444  PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE-LIHIAQFCSPHD 502
            P F  +   I  +             +    +     F  + K + + L   A+  S   
Sbjct: 576  PSFGMNALYILLLEGDTDRVLDAIASVLGRKDPQAQAFARLWKTLDDTLRSEARLTSHEP 635

Query: 503  FF-----------TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
             +             I      R     R  N+ +D      ++    E N  ++   + 
Sbjct: 636  QYMLDCAWQAFGKAEIWQKTALRNNAEGRAANDRLDTAMRLFSYASGGESNGVTAAHTID 695

Query: 552  SELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKM 606
            + +E               +     V + T   A G    +VF+       + +   +  
Sbjct: 696  AFIEQVRALAIEADSLAHTAPIDQAVTLTTPAGAAGKHWKLVFMPAFQQGQWPNLAPRNT 755

Query: 607  HIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666
                    D    +   +        +        +      + L V +TRA +++ +  
Sbjct: 756  LFGGEELAD---IMLHGRLSDDIVTSAGRENAQLAAVLASEQKSLLVALTRADERVTVSA 812

Query: 667  HSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI-----------KLTNSINKDEWIAYEWS 715
              N  +        +    +D   + +   ++            L          +    
Sbjct: 813  VLNEDHVPSDFLYGYLPEWFDRDRDADAETRVYTAVGEAGEYAGLEADPRGLVAASRSVL 872

Query: 716  THHPENTPLEREETIKQ--------LMDEQKIPKKLFSPIKNDI---------------- 751
             H P ++P  R+                       L      D                 
Sbjct: 873  AHTPTDSPQARDAAQALALLASHGIAAANPDNWAFLTEHAGADDMTEIDGKMESDGKTEH 932

Query: 752  -------------------NEPYILNPSTIDTKGKTNLESLLS--------DNQTFNRGL 784
                               ++   L+PS +D+     +  +L          +   + G 
Sbjct: 933  ADKAKLIEQPESIEKTDGQSDVVTLSPSAVDSLWACPVCWMLENRFAGPRMGSAATSFGS 992

Query: 785  IIHKLLQVIFT-----------LPEHKRKNFITSYC---------TKNAKLWPAKEYKNL 824
            +IH + Q               + +    + IT +            NA   P + YK L
Sbjct: 993  LIHAVAQQATEAGLDLPQNHTAVSDEDNIDEITQWMISRYKTLRGDLNAIDDPEERYKAL 1052

Query: 825  LLSITRLLENPMMTTAM--------------------SCDSYSEVSVSGKINCPK----- 859
                   +    + T                         + +E   + + +        
Sbjct: 1053 GKDAKASVALRNIATYFVKSNRTGYPSNNTETITVGTLDHAEAERQFAAQFDFDDILDAY 1112

Query: 860  ---------------------------------KDIIISGRIDQIS--ISQQN---IFIF 881
                                               + +SGRID++    +      + + 
Sbjct: 1113 NAIDGNAPISRDELIAIMGALVGGWPETGMSDRLTVRLSGRIDRLEHRRTADGREQVRLI 1172

Query: 882  EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
            +YKT                 QL  Y+  L   +P  
Sbjct: 1173 DYKTGKVPNGRSLFSD----LQLVCYQLGLA--FPEH 1203


>gi|325107286|ref|YP_004268354.1| DNA helicase II [Planctomyces brasiliensis DSM 5305]
 gi|324967554|gb|ADY58332.1| DNA helicase II [Planctomyces brasiliensis DSM 5305]
          Length = 613

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/393 (13%), Positives = 105/393 (26%), Gaps = 62/393 (15%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             +  EDL+   +DL K        R  I Q+  +  IDE QDTS      +  L     
Sbjct: 167 GQIGHEDLLYIASDLFKNS---KSFRRIIAQKYPYWFIDEAQDTSPEIIASLNELC---- 219

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                 +    +   GD  Q IY                             +I    +F
Sbjct: 220 ----NGNGLPIVGYFGDPMQQIYDTGMGNFSGPANF---------------QLITKVENF 260

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           R + +++ +++      +        S       +    +   +        Q +     
Sbjct: 261 RCSPEVIVLLNAFRDDVQQVPACKNASIEGSVAITLVKMEEPELPRKRYSDGQLERAQQK 320

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
              +  ++  +  +++    LARR+   I+  +G   +        +   D     R + 
Sbjct: 321 LIAAIDNWKWAANEDAKRLFLARRM---IARRMGFLRLHD------LFNGDFAS-NRAKS 370

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                         +  + +V                           D  + + +L S 
Sbjct: 371 AFEKGEHFLLKPFVEVIVPLVKAHGEG---------------------DSNTIMRILTSR 409

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
              F+          R   +   +     A    S     +  +             +  
Sbjct: 410 TRAFNSSGEHSGKAIREVRKIANDVTTTLAEKFES---ETLGQVLRYCTHQGLIRASENL 466

Query: 505 TLILGAKKGRQQF-ISRFGNEVIDVL-DEFLNF 535
            L L   K  +++  S+ G E  D L D FL  
Sbjct: 467 ELHLERSKREEEYDESQHGTEKTDWLADAFLEM 499


>gi|226312891|ref|YP_002772785.1| hypothetical protein BBR47_33040 [Brevibacillus brevis NBRC 100599]
 gi|226095839|dbj|BAH44281.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 749

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 98/291 (33%), Gaps = 50/291 (17%)

Query: 47  LKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS--- 103
            ++ + L++  + +  ++ F+ L           +K  + +E   K   + E++  +   
Sbjct: 381 HRRVEALRKHLKQEMNKQLFAHLRE---------RKVDLDKEGLYKFEKMLEQILDTYLT 431

Query: 104 ---QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLL 160
              + E           +     LA   ++  +     ++             +   + L
Sbjct: 432 SFPRLEIFTAYRELIADEELLRKLAPADISDEVVRDVTQSSAA----------LFAEERL 481

Query: 161 KKRDVSAWIRYKI-------DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +  D++  +  +         +  +H ++DE QD S ++  VI              +  
Sbjct: 482 EPEDIAPLLYLQHIVEGMNKAEHFDHTVVDEAQDLSALEIAVIAL-----------ATKR 530

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
            +L  VGD  Q I+S+ G         K I  +   +         L  S+RST +I+  
Sbjct: 531 NSLTIVGDIAQGIHSYRG-IHAWEELTKGIFAQLFPSY------YTLSQSYRSTIEIMRC 583

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
            ++V    E  + +          +   +      QLWE + S+     + 
Sbjct: 584 ANEVLRQIELPETVLAKPVLRHGEKPIMVKARSRAQLWEDISSRVADYQSE 634


>gi|41615331|ref|NP_963829.1| hypothetical protein NEQ549 [Nanoarchaeum equitans Kin4-M]
 gi|40069055|gb|AAR39390.1| NEQ549 [Nanoarchaeum equitans Kin4-M]
          Length = 267

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 73/203 (35%), Gaps = 38/203 (18%)

Query: 776 DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY-CTKNAKLWPAKEYKNLLLSITRLLEN 834
           +N+   RG I+H+  ++  +  +    +        +  K +     + L+ +I      
Sbjct: 31  ENKRLLRGKILHRAFELFDSFEKEYLNDLELPIELERFTKDYIIMANRGLVRAILEF-NA 89

Query: 835 P-----MMTTAMSCDS-------------YSEVSVSGKINCPKKDIII------SGRIDQ 870
           P      +   +  ++             Y E     KIN   K  I+       GRID+
Sbjct: 90  PQTYILELKDIIHREAKFRANYVWSFIEKYGEQ-FYNKINPIIKSEILLKYNDLVGRIDR 148

Query: 871 ISISQQNIFIFEYKTHHHVPQEIEH--IPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928
           +           YK+   +P EI+       H  QL+ Y  +L+ +Y  K  V LL Y  
Sbjct: 149 LEK---------YKSGRLIPIEIKTGTYKEYHKIQLAGYAILLEKNYNTKIDVGLLYYTK 199

Query: 929 EPKVFIIPQNKLNKAFAEISTKI 951
             +   +  +   + F E+  K+
Sbjct: 200 TDRYIEVELDPYKELFLELYEKV 222


>gi|297531124|ref|YP_003672399.1| ATP-dependent nuclease subunit B [Geobacillus sp. C56-T3]
 gi|297254376|gb|ADI27822.1| ATP-dependent nuclease subunit B [Geobacillus sp. C56-T3]
          Length = 1172

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 84/934 (8%), Positives = 239/934 (25%), Gaps = 213/934 (22%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                 +  +        +     L+    +    E++   +  LD ED +     LL +
Sbjct: 144 ELRRHAEAFEDGPDQPGRRLLADKLSDVALVYEELEKSLIGH-YLDSEDYL----RLLAE 198

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               +      D     I ID     +  ++ +I  L          H    T+    D 
Sbjct: 199 HIPRSSYLRDAD-----IYIDGFHHFAPQEYMIIEQLLR--------HCRRVTVCLTID- 244

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL-PLSFRSTADILTVVDKVFSIP 281
                                 +        +  +  L   ++R   ++    D     P
Sbjct: 245 ----------------------RPYDDGMPDELHLFYLPAQTYRQLRELALSNDIAIEEP 282

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                        + H  ++            +     +               L + S+
Sbjct: 283 IVLSANRRHEDRALVHLEAQ------FHRRPLLPYGAKTDAV-----------HLYEASN 325

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  +A  I  ++  +           + +DI +++R    T     L + +  D+ 
Sbjct: 326 RRAEIEAVAREIIRLVRDE---------GARYRDIALIIR---QTEAYRDLVKTVFFDFG 373

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I    +++  +  H  I+ + A    ++++    +    +K+ L   ++ D+        
Sbjct: 374 IPYFMDEKEPMHHHPLIELVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAAD 433

Query: 462 ETETV---------------------YEYIQKFANCGISKFQHVIKYIHELIH------- 493
           + E                       Y+ +        ++ +     ++E          
Sbjct: 434 KLENYVLAYGIKGDKWTNNERWAYLRYQALDGLNVPQTNEERQFEDMLNEWREALAPPLR 493

Query: 494 ------------IAQFCSPHDFFTLI-----LGAKKGRQQ-----FISRFGNEVIDVLDE 531
                            + + F   +     L     + +       +R   +  + + +
Sbjct: 494 RLERRLRRAEDGRGFCMALYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVD 553

Query: 532 FLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            L+  +         L E +  +E               ++V +  +  ++ ++    F+
Sbjct: 554 LLDQYVEMLGTESLPLAEFVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFV 613

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     V   K  +               +     + +   +   +    +         
Sbjct: 614 IGANDGVIPAKVKEDG-------------LMAEVEREQLRELGVALAPGGREQLFYDPFF 660

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           +Y+ +   S +L +         K          + + F +               ++  
Sbjct: 661 VYLALVCPSRRLYVTYPLADGEGKALMPSPLIKQLTELFPHAPVHLCGNDPFDAPAEKAE 720

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-------------------------- 744
           A+  +    +   + +    K+      +   ++                          
Sbjct: 721 AFVTAPRATQTYLISQLRAWKRNYGIDPLWWDVYNTFIGHQDWKEQVRHAVSALFYTNGA 780

Query: 745 -----SPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHK 788
                   +    +    + S ++   K              E  +   +  + G + H 
Sbjct: 781 TPLKKQWSQRLYGKKIQASVSRMEQFQKCPYAHFASHGLRLKERNVFRLEAPDVGQLFHA 840

Query: 789 LLQVIFTLPEH---KRKNFITSYCTKNAKLWPAKEYKNLLLSIT----------RLLEN- 834
            ++ I           +      C + +     +    +   +           R L++ 
Sbjct: 841 AIKQIADRLREQHLDWRELSRPDCERLSAEAIERIAPLIQQQVLSSSHRYEYMKRKLKHV 900

Query: 835 -PMMTTAMSCDSYS--------EVSV-------SGKINCPKKDII-ISGRIDQISISQQN 877
               T  +S  + +        E+S          +   P   ++ + GRID++  ++ +
Sbjct: 901 VARTTHVLSEHARASGFVPIGLELSFGPNGDLPPLRFRLPDGTVMELVGRIDRVDKAESS 960

Query: 878 ----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
               + I +YK+      ++  + Y    Q+  Y
Sbjct: 961 QGVLLRIIDYKSSAKT-LDLTEVYYGLALQMLTY 993


>gi|258620541|ref|ZP_05715578.1| DNA helicase II [Vibrio mimicus VM573]
 gi|258587056|gb|EEW11768.1| DNA helicase II [Vibrio mimicus VM573]
          Length = 189

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 34/105 (32%)

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               + + V++MT+H+AKGLE P+VF+V     +F  +                      
Sbjct: 12  QADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMS-------------------- 51

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                           +    EE  RL YVGMTRA  +L I    
Sbjct: 52  --------------AEEAGRLEEERRLCYVGMTRAMQKLYITYAE 82


>gi|213423081|ref|ZP_03356099.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 222

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 75  TQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLN 134
           T +    K +    I      L++ +    +    ++         K       +  +  
Sbjct: 111 TDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGERD--RIFAHCY 168

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
             Y+   K   VLDF+DLI+    LL++ D    +R +   +I ++L+DE QDT+
Sbjct: 169 GLYDAHMKACNVLDFDDLILLPTLLLQRNDE---VRERWQNKIRYLLVDEYQDTN 220


>gi|315172135|gb|EFU16152.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
          Length = 271

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 78/207 (37%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  SD +    G  +H   +    + E  ++   +   +        K
Sbjct: 38  EAAALAKLKGEWTPESDPKALLVGNYVHSYFES-PEIHEAFKEENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +     +        EV V+G+I       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLSIY--QGKKEVIVTGEI----GGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDIHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|226326683|ref|ZP_03802201.1| hypothetical protein PROPEN_00536 [Proteus penneri ATCC 35198]
 gi|225204904|gb|EEG87258.1| hypothetical protein PROPEN_00536 [Proteus penneri ATCC 35198]
          Length = 117

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 36/139 (25%)

Query: 525 VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKG 582
            I+ L+E +  T +   Q+    L  L + L        +    A  + V++MT+H+AKG
Sbjct: 12  RIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAALESGESQADAYQDAVQLMTLHSAKG 71

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           LE   VF+V     +F  +                                         
Sbjct: 72  LEFSQVFIVGVEEGMFPSQMSLDEGG---------------------------------- 97

Query: 643 TQEEYNRLLYVGMTRASDQ 661
             EE  RL YVG+TRA  +
Sbjct: 98  RLEEERRLAYVGVTRAMKK 116


>gi|315173243|gb|EFU17260.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
          Length = 271

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 79/207 (38%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       + +SD +    G  +H   +    + E  ++   +   +        K
Sbjct: 38  EAAALAKLKGEWTPVSDPKALLVGNYVHSYFES-PEIHEAFKEENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +   EV V+G+I       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIYQGE--KEVIVTGEI----GGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDMHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|283781176|ref|YP_003371931.1| hypothetical protein Psta_3407 [Pirellula staleyi DSM 6068]
 gi|283439629|gb|ADB18071.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
          Length = 274

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 59/197 (29%), Gaps = 34/197 (17%)

Query: 756 ILNPSTIDTKGKTNLES---------LLSDNQTFNRGLIIHKLLQV-----IFTLPEHKR 801
            ++ S I T     L               + +   G  IH+  ++     +   P    
Sbjct: 21  YISWSAISTYQACPLRWCFRYVHGLPEAFVSSSLVFGSAIHQAAELHYYELLSGNPAPAL 80

Query: 802 KNFI----TSYCTKNAKLWP---AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
              +     ++  ++         ++  +L     R+L     +   + +          
Sbjct: 81  DTLLSAYHAAWLERDLASIKFGKDEDINSLSDLAERVLSAFRASPLANPNGQ-----IVG 135

Query: 855 INCPKKDIIISG------RIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           +    +  I+ G      R+D I      + + + KT      + +        QL +Y 
Sbjct: 136 VEEELRGRIVEGCPELLARVDLILDEGSELVVTDLKTAKSRWSQHQAHDSG--GQLMLYS 193

Query: 909 KILKDSYPNKSLVCLLI 925
           ++ K+  P K +    +
Sbjct: 194 ELAKELMPGKPIRLQFL 210


>gi|302524381|ref|ZP_07276723.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302433276|gb|EFL05092.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 286

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 23/184 (12%)

Query: 749 NDINEPYILNPSTIDTKGKTNLESLL---SDNQTFN--------RGLIIHKLLQVIFTLP 797
                   ++P+ + T         L                   G ++H  L+ +F LP
Sbjct: 12  EQPQRLTKVSPARLSTFDDCPRRYRLAYLDRPTPQRTGPWAHSTLGAVVHNALRALFDLP 71

Query: 798 EH----KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-PMMTTAMSCDSYSEVSVS 852
                 +R   + +   K+A      +           +                E  VS
Sbjct: 72  VAKRTPQRAIALVAEHWKDAGFADDDQAARYRARAKGWVAEYVEDNDVSDDPVGLERWVS 131

Query: 853 GKINCPKKD--IIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ-LSIYEK 909
             ++       +II GR D+I      + I +YKT    P E E        Q L++Y  
Sbjct: 132 APVSTTGGRPTMIIEGRADRIDQRGGELVIVDYKTGRRAPDEHEARAS----QALAMYAV 187

Query: 910 ILKD 913
               
Sbjct: 188 AASR 191


>gi|297626726|ref|YP_003688489.1| Helicase protein [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922491|emb|CBL57064.1| Helicase protein [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 736

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 22/127 (17%)

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           ++ T DLL  +  +     ++ Q  +H+L+DE QD + +QW +IR               
Sbjct: 497 LVTTADLLSDQRDTED--DELLQNYSHVLVDEAQDITPMQWRMIRR-----------RGP 543

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
             +   VGD  QS Y             +     R            L  ++RS A+++ 
Sbjct: 544 QASWTIVGDPAQSSY---------PEAAQTDRAMRELIGRAPHRTFRLATNYRSPAEVMN 594

Query: 273 VVDKVFS 279
           +  +   
Sbjct: 595 LAGRFIR 601


>gi|325062342|gb|ADY66032.1| hypothetical protein AGROH133_09972 [Agrobacterium sp. H13-3]
          Length = 848

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/379 (10%), Positives = 96/379 (25%), Gaps = 44/379 (11%)

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
               N   V +   H +       + + D    ++  +       + S          + 
Sbjct: 387 DPVRNLEGVSLWLAHESPWRPCQHLIISDFTDGLYPTRPRANPMFLDSEVTSIRAATGLA 446

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
                 ++   L     +                +     +    + S  K         
Sbjct: 447 LRGRAASLAQGLAHFDHQLQ------------ATSGSVTFLIPWRDLSGTKLQPSAGLSL 494

Query: 684 MVYDSFHNDERVKKIKLTNSINKDEWI---AYEWSTHHPENTPLEREETIKQLMDEQKIP 740
           +       D+    I   + ++  +W     +        + P       + L+  +++ 
Sbjct: 495 IGRSIHKLDDASDLITDLSRLSPSDWPLMHHHLPPLPMQPDLPEALNFPGQDLLSLRRMD 554

Query: 741 KKLFSPIKNDINEPYILNPST--IDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF--TL 796
                P      E  +++P    +   G  ++     +     +G I H + + IF    
Sbjct: 555 DGTVKPQSPSRLETLLVSPLAWLLAEAGAEDMSWSADELDVMAKGNIAHDVFEHIFLKDQ 614

Query: 797 PEHKRKN-------FITSYCTKNAKLW----PAKEYKNLLLSITRLLENPMMTTAMSCDS 845
           P    +               ++A          E K L   I            ++ ++
Sbjct: 615 PVPDPETLTAAVPGAYDRALMRHAGYLRSPSWEMERKGLEREILAA-ALRWRDHLLALNA 673

Query: 846 YSEVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYK----THHHVPQEIEHIPYTH 900
              +     +      I + G+ D I       + + ++K    +      E        
Sbjct: 674 KI-IGNEIWLAGEAHGIQLQGKADAILELPDGTLLVVDHKKSGTSGRRKRMEAAW----- 727

Query: 901 IAQLSIYEKILKDSYPNKS 919
             Q  +Y  ++    PN+ 
Sbjct: 728 DLQAGLYRDMISR--PNRR 744


>gi|311740501|ref|ZP_07714328.1| DNA or RNA helicase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304021|gb|EFQ80097.1| DNA or RNA helicase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 741

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 87/274 (31%), Gaps = 36/274 (13%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
            L+ + +   +  + WP  +   +D+   +  S E          +  Q+A         
Sbjct: 406 DLAEDAAVTALIDEFWPELH--PTDVLAALVSSRERIASAAHGYDEETQEALYRAEGRAW 463

Query: 66  FSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA 125
               S   L  +      +   E  K + D        +++     D  +     +ST  
Sbjct: 464 TD--SDAALLDELAVLIGLPNPEEKKAADDA-----AWREQVADAEDALDILSSSESTDN 516

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
              + +       E    + V+D E L     ++  KR  +   R        HI++DE 
Sbjct: 517 DDDMFEA------EILSAHDVIDAETLAHR-QEVRDKRTTAQRAREDHTWAYGHIIVDEA 569

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           Q+ + ++W ++                 R +  VGD  Q+        P  V       +
Sbjct: 570 QELTPMEWRMLFR-----------RCPSRWMTLVGDTSQT------GSPAGVDDWGEALE 612

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
                  Q+F    L +++R+   I  + + +  
Sbjct: 613 ---PFVAQRFRHHFLTVNYRTPQPITELANGLLE 643


>gi|254389765|ref|ZP_05004989.1| helicase protein [Streptomyces clavuligerus ATCC 27064]
 gi|197703476|gb|EDY49288.1| helicase protein [Streptomyces clavuligerus ATCC 27064]
          Length = 766

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 34/269 (12%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
             LW          +  ++  + +     +    + +        +E +  L+   +   
Sbjct: 393 DALWSRSGAAGRHTDPELAAELRSSFDEDVTGEDSFRLFL-----DEWWPELTPRAVLAA 447

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
              ++ +        +P    +L +S            +            L        
Sbjct: 448 MADERRLSRWARRVLNPGEVRRLARSLKRVGPDGTGPLSVHDVALLDELHALLGA----- 502

Query: 138 EEAKKKNCVLDFEDLIINTNDLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
               ++   LD  D +    +L+    + +   A        E  H+++DE QD + +QW
Sbjct: 503 PARPRRKRELDPLDQLTGLEELMPQREESQRERAERLAAERTEYAHVIVDEAQDLTPLQW 562

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +I                  T   VGD  QS       EP+     +           +
Sbjct: 563 RMI-----------GRRGRHATWTVVGDPAQS----SWPEPEEAAELRDE-----ALGSR 602

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPE 282
                +L +++R+ A+I  +  KV +   
Sbjct: 603 PRRRFQLTVNYRNPAEIAELAAKVLARAM 631


>gi|170756517|ref|YP_001782966.1| putative helicase [Clostridium botulinum B1 str. Okra]
 gi|169121729|gb|ACA45565.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 709

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 56/181 (30%), Gaps = 19/181 (10%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +    I HI+IDE QD S +Q+ V++ LT+            +++  VGD  Q       
Sbjct: 489 RYRNGIKHIVIDEAQDYSFLQFVVLKELTDC-----------QSITIVGDVNQRTLPCKD 537

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             P   L         +           L  S+RST +I+   +K     +    + E  
Sbjct: 538 EVPMLCL--------DSVFNRVDVEYFNLDKSYRSTKEIIEYANKHLKTNKIVPLVREGD 589

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   +    +  V  +   +   + +      +       +  E    +    I  
Sbjct: 590 PVKEVTVKNSREAIDKVNYYLSYLENKEYENIAIITTTLEQGKVIGSELKKQMYINLIER 649

Query: 352 T 352
            
Sbjct: 650 E 650


>gi|23015052|ref|ZP_00054841.1| COG3893: Inactivated superfamily I helicase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 975

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/361 (8%), Positives = 87/361 (24%), Gaps = 44/361 (12%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           E       R+   +H  + I     A+   + ++ L       +         +   +  
Sbjct: 547 ELMAGVAVRSAWDHHPRLFIWGPLEARLQHADLLILGGLNEGTWPAPPEADPWMSRPMQA 606

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G+     +     +                           A+ ++++ + S      
Sbjct: 607 AFGLAPPERRIGLAAHDF---------------------AQGFAAPRVVLTRSSRVDGTP 645

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
               R    +      +     +               +         P        + +
Sbjct: 646 TVPSRWLMRLDAVMKGSGLAFDQDAAQWLEWHALLDRPDRWKRPEIPAPAPPVSARPRRL 705

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
              +I   +  P          L            L+ + +D      G ++H+ L++  
Sbjct: 706 SVTEIETWMRDPYAIYAKHVLRLKA----------LKPIDADPGAAEYGSMVHEALELFL 755

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL---------LSITRLLENPMMTTAMS-CD 844
                   +       +  +     +  +            S+ R +    M    +   
Sbjct: 756 KAWPAHLPSDPQGELLRIGREVFEAKVTSPALWAFWWPRFESVARWVAAKEMGRRHAVRR 815

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            ++E   + +I  P     ++ + D+I       + + +YKT          +      Q
Sbjct: 816 VHAEAGGALEIEAPAGPFTLTAKADRIDEGQDGTLALIDYKTGTPPKAR--EVAAGFAPQ 873

Query: 904 L 904
           L
Sbjct: 874 L 874


>gi|309389724|gb|ADO77604.1| hypothetical protein Hprae_1477 [Halanaerobium praevalens DSM 2228]
          Length = 866

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 36/164 (21%)

Query: 780 FNRGLIIHKLLQVI-----------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI 828
              G++ H++   +             + E +R+  I     KN               I
Sbjct: 639 MTLGILTHQIFGDLMIYAKKTKIMPSQIKESERQQIIKKAIKKNELKIDKDYLNYYNQII 698

Query: 829 TRLLENP--MMTTAMSC-------DSYSEVS-----VSGKINCPKKDIIISGRIDQISIS 874
            + L++        +         +   E       +         D  +SGRID + ++
Sbjct: 699 FKSLDSSFIRFAHLLEKYLPEDFSNILVEWPEWNRELEKYFEVGGIDFYLSGRIDLLLLN 758

Query: 875 QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK 918
           +   FI ++KT                 QL  Y  +L+ +Y  K
Sbjct: 759 KGEYFIIDFKTGSGD-----------QKQLDFYSLMLRQNYNKK 791


>gi|257440763|ref|ZP_05616518.1| UvrD/Rep helicase [Faecalibacterium prausnitzii A2-165]
 gi|257196737|gb|EEU95021.1| UvrD/Rep helicase [Faecalibacterium prausnitzii A2-165]
          Length = 698

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            + +      +        +  +       L   +  +Y+   K++ + D    +     
Sbjct: 371 VISQEAITRDQYLKASRNGRGTRLDRRKRLLVWQVLDNYQNLMKEHQIRDINTAMYECTK 430

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL+   V          +  HI++DE QD S I + +IR+L                LF 
Sbjct: 431 LLQGSSVK--------SQYTHIIVDEGQDLSDIAYRLIRALAG--------PEHANDLFI 474

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           VGD  Q IY       K  +  +                  L +++R+T +I    
Sbjct: 475 VGDAHQRIYRNRPILSKCGINVR-------------GRSSILKINYRTTEEIRHSA 517



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 28/116 (24%)

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           +  Y     +  + N + +R+ T+H  KGLE   VF+     +V                
Sbjct: 602 IRSYAIKRNQPDNRNFDGIRVATMHRVKGLEFKYVFIAALNHRVVPLA------------ 649

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
                             ++ +    +K +      LLYV MTRA   + I  +  
Sbjct: 650 ----------------AAINHMDPISEKESITSEKCLLYVAMTRAQKGVYITSYGT 689


>gi|145489506|ref|XP_001430755.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397855|emb|CAK63357.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1451

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 19/142 (13%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           YE  K+K   +D  DLI   N LL   + +  IR+     I+H  IDEVQD      E+ 
Sbjct: 634 YEIWKEKEQYIDQLDLI---NSLLVNIEQNQLIRF----PIHHSYIDEVQDLPQAMIELF 686

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFS 256
             +TE            + +   GD  QSI    G     +    + ++K   N  +KF 
Sbjct: 687 CKITE------------QGIIFCGDSAQSILKGVGFRFSDLQTIFKTSKKIGANQLEKFQ 734

Query: 257 IIELPLSFRSTADILTVVDKVF 278
           + +L  +FRS  +IL + + + 
Sbjct: 735 VFQLTKNFRSHNNILQLANCII 756


>gi|329955054|ref|ZP_08296035.1| hypothetical protein HMPREF9445_00875 [Bacteroides clarus YIT
           12056]
 gi|328526344|gb|EGF53359.1| hypothetical protein HMPREF9445_00875 [Bacteroides clarus YIT
           12056]
          Length = 963

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/487 (12%), Positives = 141/487 (28%), Gaps = 76/487 (15%)

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +   +      +    + +Y+ EL+         +     +  +  R+     +      
Sbjct: 427 DAFLERIFTPQNGISSICRYLTELLREVAVVYRQEKDEEDIFNQLYRESLFKSYTL---- 482

Query: 528 VLDEFLNFTL-RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            ++  L+            +L+ L++ L                 +++M V   + L+  
Sbjct: 483 -VNRLLSLIESDGLSLQTDTLKRLMNRLLTSTNIPFH--GEPAIGMQVMGVLETRNLDFR 539

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            + ++                I  +L    G+     ++              +   + E
Sbjct: 540 NLIMLSLNEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNSV------YAYYFYRLIQRAE 593

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              LLY                +T+++  +       M+     +   + +  L    + 
Sbjct: 594 NITLLY----------------DTASDGLNRGEMSRFMLQFLVESPHDISREYLEAGQSP 637

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                 E           E    +    D ++ P  LFSP   +      L        G
Sbjct: 638 QHSREIEIHKTD------EVLSRMYNTYDIRRHPNALFSPSALNTYLDCRLKFYYRYVAG 691

Query: 767 KTNLESLLSDNQTFNRGLIIHK----LLQVIFTLPEHKRKNFITSYCTKNAKL------- 815
               + + ++  +   G I H+    + Q +    +  RK  +      + KL       
Sbjct: 692 LKAPDEVSAEIDSALFGTIFHRSAELVYQDLTANGKEIRKEDLEQLLRNDVKLQTYVDTA 751

Query: 816 -------WPAKEYKN-----------LLLSITRLLENP-MMTTAMSCDSYSEVSVSGKIN 856
                   PA E              +   + +LL N              +V+ + ++N
Sbjct: 752 FKEELFHVPADERPEYNGTQLVHSKVIASYLRQLLRNDLQYAPFHMEAMEQKVTETIEVN 811

Query: 857 CPKKDIIIS--GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSI 906
            P   + ++  G ID++      + I +YKT      P+ IE +        ++I Q  +
Sbjct: 812 TPLGTLPLNIGGTIDRMDSKNDTLRIVDYKTGGTPKTPENIEQLFTPADNRPSYIFQTFL 871

Query: 907 YEKILKD 913
           Y  I+  
Sbjct: 872 YAAIMCR 878


>gi|284992637|ref|YP_003411191.1| hypothetical protein Gobs_4258 [Geodermatophilus obscurus DSM
           43160]
 gi|284065882|gb|ADB76820.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
           43160]
          Length = 287

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 49/178 (27%), Gaps = 21/178 (11%)

Query: 751 INEPYILNPSTIDTKGKTNLESLL---SDNQTFN--------RGLIIHKLLQVIFTLPEH 799
               +   PS +                               G  +H  L+  + LP  
Sbjct: 12  PRRLFPATPSKLAAFSDCPRRYRHAYVDRPTPARGPAWAHNSVGSAVHAALRSFWELPLA 71

Query: 800 KRKNFITSYCTKN----AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKI 855
            R               A    A++ +         L +    T +       V    ++
Sbjct: 72  GRTAGSARQLLYGVWSTAGFRDAEQSERWRARAAGWLTD--YVTGLDPADE-PVGTERQV 128

Query: 856 NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
               + + +SGR+D+I      + + +YKT   V  + E         L+ Y   ++ 
Sbjct: 129 AATTERLALSGRVDRIDQRGDELVVVDYKTGRSVCTDDEA---RGSPALAAYVLGVRR 183


>gi|221194763|ref|ZP_03567820.1| hypothetical protein ATORI0001_0314 [Atopobium rimae ATCC 49626]
 gi|221185667|gb|EEE18057.1| hypothetical protein ATORI0001_0314 [Atopobium rimae ATCC 49626]
          Length = 1037

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 61/639 (9%), Positives = 142/639 (22%), Gaps = 114/639 (17%)

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           I   I  +I                   +   ++ +    +          + I      
Sbjct: 290 IIEHIQGLIAQGVKSFG-----------IYAPQQNEAWRQLAPRLAA----HGIPAKTVM 334

Query: 409 RFILTDHLAIKDLMALGRFIL----SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETE 464
           R  ++D    +  + L R +       E            +  +   +I           
Sbjct: 335 RQAVSDSSCARAFLGLVRAVCKLKNLCEVWPDASQAELGDMSWWPPREIVDFLFSPLSFV 394

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHI-AQFCSPHDFFTLILGAKKGRQQFISRFGN 523
           +  +          ++       +  L    A           IL      ++ + R   
Sbjct: 395 STEKAWDIDKMWRKNRILTPDHLLRFLRQASATSKECAATVESILN--GRIEKALHRLLI 452

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
              +  ++F +       NS S++  +   L +       A      EV       A   
Sbjct: 453 ACDEHREDFDDEAYLLISNSLSAIMTVAQALHKLEAKADIASEQKFYEV-------ACQK 505

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW-------------IPQSKSRNN 630
              +         V S   +    +      +P                    + K+ + 
Sbjct: 506 SFSLCLNNGAAETVGSKAPVSVEILSDKSMREPNTFDAVICLGMDSVNTSLPTKDKASDL 565

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
           +   L      +   E  R LY  +  A   + +   +++ +  K+        +   + 
Sbjct: 566 LAEKLEGVRPIAPLAEGRRRLYRMLASARTYVSLACVAHSEDSNKTFASVVLKELLSCYE 625

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
             E    +                    P             + +  K    L S    +
Sbjct: 626 TAEGEFNLPQLTRGEGRLSANLLLGGKTPAKVDSLPLRPTGSISETLKPFVILPSYRGVE 685

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDN----------QTFNRGLIIHKLLQVIFTL---- 796
             +   L+ S I++  +   +  +                 +G  IH++L++        
Sbjct: 686 QPQIQELSASQIESYLECPYKWFVQRRLKLDRVDAGFSGLEKGTFIHRVLELTHMQLLQE 745

Query: 797 ---------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
                     E+  +   TS              + +L +    L              +
Sbjct: 746 ALGTSDALSDEYVWQAVATSLPDSRISQDTLAHVRYVLSTQFDALAKEQFVAPQKTQRRT 805

Query: 848 ------------------------------------EVSVSGKINCPKK------DIIIS 865
                                                     K             +  +
Sbjct: 806 QRLVPHTVAQHQQMQKLREDLFGLLDFETDKFVTFEPRFFELKFGADGGFPATYAGVAFT 865

Query: 866 GRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
           G ID+I ++      I +YK       +      ++  Q
Sbjct: 866 GSIDRIDVNARGEAIIIDYK------HKAAQALSSYAVQ 898


>gi|73663118|ref|YP_301899.1| putative ATP-dependent nuclease subunit B [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|123642146|sp|Q49WA5|ADDB_STAS1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|72495633|dbj|BAE18954.1| putative ATP-dependent nuclease subunit B [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1153

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 77/704 (10%), Positives = 184/704 (26%), Gaps = 151/704 (21%)

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
             + +   + A  +   I+ +       +  + R  + +DI +L R      L+  +   
Sbjct: 295 PTEGNVEILEASGMREEINEVARRILRENREQGR--RFQDIAILYRDESYAYLMESIL-- 350

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL---------- 445
               Y I    + +  +T H  ++ + +L   I +       + + K+ +          
Sbjct: 351 --PQYDIPYNIDVKSSMTHHPIMEMIRSLIEVIQTGWQFDPLMRLFKTNILTKKFKDSQY 408

Query: 446 -----------FNF-SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
                           +  I        +   +    Q   +     F+ VI+  ++++ 
Sbjct: 409 LIDILENFVLERGIYGKRWIDDKYFDIEQFRKMGLKRQPLTDEERETFERVIQLKNDVMK 468

Query: 494 IAQ---------------------FCSPHDFFTLILGAKKGRQQFISRFGNEVID----- 527
                                        D  + ++  +            E ID     
Sbjct: 469 KVMLFEEKINNASTAIAFATAFYEAMEAFDLPSQLMTDRDTLDVNGEHKKAEEIDQIWNG 528

Query: 528 ---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
              +LD+ +        +    L+     LEQ    +        ++V I T+  AK   
Sbjct: 529 LIQILDDLVTVFDDQSMSKTRFLELFDIGLEQLEFIMIPQT---LDQVSIGTMDLAKVDN 585

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V+LV     V          I               +   +     +L         
Sbjct: 586 KQHVYLVGANDGVLPQTVTASSLITDEE-----------KKYFQEQSSIELSPTADILQM 634

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
           +E   + Y+ MTR+   +        ++        +   +   + N E         + 
Sbjct: 635 DEAF-VCYIAMTRSRAHVTFSYALMGASGDVKEPSPFLHQIQQLYTNLEVQNIHHQHQAE 693

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNP----- 759
                     +      +     +            + + +  + +    Y+L+      
Sbjct: 694 PLRLMEHPHQTKIALFESLKAWLDDELVAETWLDTYQVMRNDTRLNDGLTYLLSALTYDN 753

Query: 760 ----------------------STIDTKGKTNLESLLS-----------DNQTFNRGLII 786
                                 S  +       +   S             + F+ G I 
Sbjct: 754 QTVQLNPSLSKALYGSTINASVSRFEGYQACPFKHFASHGLRLNERTKYKLENFDLGDIF 813

Query: 787 HKLL----QVIFTLPEHKRKNFITSY-CTKNAKLWPAKEY---------KNLLLSITRLL 832
           H++L    + +    ++     I        +++ P  ++         + L   I  ++
Sbjct: 814 HRVLKFISEKVNGDFKNLNPKQIHKLTTEALSEILPEVQFNLLNSTAYYRYLSQRIGAIV 873

Query: 833 ENPMMTTAMSCDSY---SEVSVSGKINCPKKDII----------------ISGRIDQIS- 872
           E   +T      S+   +            KD                  I G+ID+I  
Sbjct: 874 ET-TLTALKYQGSHTKFTPQRFEASFRRKPKDQSELLATPLQTKQGIPINIRGQIDRIDT 932

Query: 873 --ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL 911
                ++   I +YK+  +    ++     +  Q+ +  Y  I+
Sbjct: 933 YQQGDESFVNIIDYKSSKY-SGTLDLTKVYYGLQMQMMTYMDIV 975


>gi|299535965|ref|ZP_07049284.1| ATP-dependent nuclease subunit B [Lysinibacillus fusiformis ZC1]
 gi|298728570|gb|EFI69126.1| ATP-dependent nuclease subunit B [Lysinibacillus fusiformis ZC1]
          Length = 1169

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 84/706 (11%), Positives = 184/706 (26%), Gaps = 162/706 (22%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           + S+       IA  I+ +   D           + +DI++L R      L   L   + 
Sbjct: 311 EASNRRAEVHAIAREITKLTRED---------GFRYQDIVLLYR---QADLYDPLITSIF 358

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
             Y+I +  N +  +  H  I+   +    + S          +K+ LF   + ++    
Sbjct: 359 QQYEIPIFTNTKKTMLHHPLIELSRSALEVMTSNWKYEPVFRGVKTDLFFPLQAELTIWR 418

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELI---------HIAQFCSPHDFFTLIL 508
            +    E        +      + +   K    L            A           I 
Sbjct: 419 ERADRLENYCLAQGIYGERWFEEARWFYKKYRGLEFHSRVQTDEERAMQAEIEAIRDEIR 478

Query: 509 GAKKGRQQFI--SRFGNEVIDVLDEFLN----------------------FTLRNEQNSY 544
              K  Q  +  ++ G ++   L E +                           +EQ   
Sbjct: 479 QPLKLLQDKLDSAKNGRDIATALFELIESLQVYDKLQAMKDRELERGDALAASEHEQAWN 538

Query: 545 SSLQELISELEQYPPTIKRAHSANH------------------NEVRIMTVHTAKGLESP 586
             +  L   +  +         A                    +EV + TV  A+     
Sbjct: 539 EWIAVLDQFVYMFGEQEMSVEQAAKILDEGFDTLEFSRIPPTLDEVMVATVDLARLSNIK 598

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           V F++     V+  +   +  +     +      +     S N ++              
Sbjct: 599 VAFVIGMNDGVYPTRMEYEGLLSDIEREWFSQIGYELAPTSTNRLLQ------------- 645

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY----------DMVYDSFHNDERVK 696
            N L Y  +T  S++L +   +     K      +            ++         + 
Sbjct: 646 ENFLFYRAITTPSNKLYMTYPTADEEGKALLASLYMKKIIGNDKKAGLLSGVSIERVVID 705

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
            I+L +            +  H      + E + +   +   + +         +    +
Sbjct: 706 PIELLDGDVLPYLRHPRTALAHLMVQLRQAEHSRELAPEWLALQRFYKQDPYWALIFDRV 765

Query: 757 LNP---------------------------STIDTKGKTNL-----------ESLLSDNQ 778
           L P                           S I+   +              E      +
Sbjct: 766 LYPITHKNEAEPLETYITQELYGQKLTSSVSRIEKYFRCPFSHFTTYGLRLEERAEYRLE 825

Query: 779 TFNRGLIIHKLLQVIFTLPEHKRKNFIT------SYCTKNAK-----------LWPAKEY 821
           TF  G + H+ L+ I      ++ ++I           + A            L  +  Y
Sbjct: 826 TFAMGDLFHEALKWITEETHRQQLSWIRLTTKQIKQLARQAVEQIVPVFSHQILLSSARY 885

Query: 822 KNLLLSITRLLEN-----------PMMTTA-----MSCDSYSEVSVSGKINCPKKDIIIS 865
           + +   + R++E                            + ++          K + + 
Sbjct: 886 RYIQRKLIRIVERTMTALTQHANVSHFKPIAIEASFGPGQHEQLPPLEIDLTGGKKMFMR 945

Query: 866 GRIDQIS---ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           GRID++    I  ++   I +YK+      ++  + Y    Q+  Y
Sbjct: 946 GRIDRVDSATIDDRSYLRIVDYKSSAR-DLDLNEVYYGLSLQVLTY 990


>gi|269123274|ref|YP_003305851.1| hypothetical protein Smon_0494 [Streptobacillus moniliformis DSM
           12112]
 gi|268314600|gb|ACZ00974.1| hypothetical protein Smon_0494 [Streptobacillus moniliformis DSM
           12112]
          Length = 618

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 30/157 (19%)

Query: 775 SDNQTFNRGLIIHKLLQV----------------IFTLPEHKRKNFITS----YCTKNAK 814
            D ++   G I H ++++                +    +    N I         K  K
Sbjct: 390 EDIESVEVGNITHNIMELMINKVGKNINHVKKNELLEYIKEAISNVINQKDNNILEKYKK 449

Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSC----DSYSEVSVSGKINCPKKDIIISGRIDQ 870
            +      +L  +I    +   +   +      D YSE  V   +    + I ++G+ D 
Sbjct: 450 YFYITYINDLPKTILDFFD--KLKKVLIHENIVDVYSEKVVEFDVELEDRIIKVNGKTDL 507

Query: 871 ISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           +  ++    I ++KT              +  Q++IY
Sbjct: 508 VVETEDKYIIIDFKTGKFKK----EKMKVYANQVTIY 540


>gi|325291158|ref|YP_004267339.1| UvrD/REP helicase [Syntrophobotulus glycolicus DSM 8271]
 gi|324966559|gb|ADY57338.1| UvrD/REP helicase [Syntrophobotulus glycolicus DSM 8271]
          Length = 755

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 89/334 (26%), Gaps = 44/334 (13%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-YLNAHYEEAKKKNC 145
           ++   K  ++ E+ +  + E        +  +  +         + +    Y    ++  
Sbjct: 405 KKRLGKLMNIVERSEGHELEIKTFSRYLSLIEAKQFVRRLHQFTRIHYLEIYRLLFRQEG 464

Query: 146 VLDF-----------EDLIINTNDLLKK-----RDVSAWIRYKID-------QEINHILI 182
           +L F             +I  TN  L        D +  +  K           I H +I
Sbjct: 465 LLRFLAQGLELPENINGIIAETNAALTAGQAYYEDCAPLLYLKTRVEGIRSYSRIRHAVI 524

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD S +Q+EV   L                   +GD  QS+      E         
Sbjct: 525 DEAQDYSPLQYEVFNLLF-----------PNARFTVLGDVNQSL------EKNIDDTLYD 567

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                      K S + L   +RST +I     ++    E                ++  
Sbjct: 568 QISSIL--RKPKTSKVLLSTGYRSTKEINAFAREILGKDEQFSLFDRCGEQPSIRPAANT 625

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
           G+     + +                     +    + +     R I      + GT  +
Sbjct: 626 GEKTRAIILDIRDYVSKGLSVAVLCKTMRDAEKAYSQLNEISGIRLIGPQEEEL-GTGPL 684

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                       D +++    K+T       + L
Sbjct: 685 ILPSYLAKGLEFDAVIIYNADKETYQSETDRQIL 718


>gi|306827619|ref|ZP_07460899.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes ATCC
           10782]
 gi|304430182|gb|EFM33211.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes ATCC
           10782]
          Length = 1071

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 74/653 (11%), Positives = 173/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLVDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLKKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVPTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELISFGLPLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                +     +I++ 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIKVIDQEKNFHLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ I +YK+  +   +I         QL+ Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGIVDYKSSANQF-DIGTFYNGLSPQLATYLAALKQIAPH 922


>gi|227363971|ref|ZP_03848071.1| DNA helicase [Lactobacillus reuteri MM2-3]
 gi|325683176|ref|ZP_08162692.1| ATP-dependent DNA helicase [Lactobacillus reuteri MM4-1A]
 gi|227070893|gb|EEI09216.1| DNA helicase [Lactobacillus reuteri MM2-3]
 gi|324977526|gb|EGC14477.1| ATP-dependent DNA helicase [Lactobacillus reuteri MM4-1A]
          Length = 775

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 18/225 (8%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +  ++I ++ +DEVQD    Q    +                     +GD  Q+I++   
Sbjct: 531 RGQRDIRYVFVDEVQDYDAYQLAYFKY-----------RFPRAKFTLLGDLNQAIFT--- 576

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +      +          +K  +++L  S+RST  I      +    E  +    + 
Sbjct: 577 --HENSRSLLKQLGTMFD--PEKTKVVQLTKSYRSTKQITDFTKHILIDGEAIEAFEREG 632

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                +++    +     +      Q+D              + L Q+ +A+ +   +  
Sbjct: 633 NKPQVYQTKDEQEGVAAVINILNKYQNDHDAVAIIGKDLKDSEELYQKLNANNIKTTVIR 692

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           T +  +    I            D +++              + L
Sbjct: 693 TENQRLVKGPIVVPSYLAKGLEFDAVIVWNANDQQYHGNDERQLL 737


>gi|188582349|ref|YP_001925794.1| hypothetical protein Mpop_3104 [Methylobacterium populi BJ001]
 gi|179345847|gb|ACB81259.1| conserved hypothetical protein [Methylobacterium populi BJ001]
          Length = 884

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/502 (10%), Positives = 127/502 (25%), Gaps = 67/502 (13%)

Query: 508 LGAKKGRQQFISRFGNEVI----DVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKR 563
           L       + ++R   E      D +           + S ++ +   + L+     I R
Sbjct: 327 LSTPGAWNRLLARLTPEDWPDGADHVPALRTAVDTLAKGSDAASEIGDAFLKGRALAIWR 386

Query: 564 AHSANHNEVRIMTVHTAKGLES------PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                     I         +        V ++  +       + ++ + +  S      
Sbjct: 387 KVLLAGPAASIDATLETLKQDDGLEACVCVAWMPASALAASPRRFVRLLGLNSSRWPRGI 446

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT----RASD----QLI-----I 664
               +         V D +       ++    +     T    RA      +L+     +
Sbjct: 447 AEDRLIPDHIIPTPVLDPLPVNLADRRDFETIIATTADTVVLSRARRDSDGRLLGRSPLL 506

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
               + +  +++          D      +           +  W  +  +   P +  +
Sbjct: 507 AGRGDETYLRRNATPAHAFSETDRLMARPQEFAADPQAVGAQGCWRDWRRAEVTPHDGLV 566

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGL 784
             +  +   +  +         +  +      +          +    +L        G 
Sbjct: 567 RADHPLVLAILGRTQSASSLRRLLRNPLSFVWVYAFGWREPQSSAEPLVLD---ALGIGD 623

Query: 785 IIHKLL-------QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL------------ 825
           ++H +L       +    L     +    +       +    E +  +            
Sbjct: 624 LVHMVLDRALRDLETGGGLASADTETIEAAVARAAQAVAADWESERPVPPSVIWGRTLDD 683

Query: 826 LSITRLLENPMMTTAM-SCDSYSEVSV---------------SGKINCPKKDIIISGRID 869
             +            +    ++ EV                 S  +  P     I+G ID
Sbjct: 684 ARVMAGRALSYGDEILPGARAFGEVPFGGLEPKSDAETPWDASTPVTIPDTGFSIAGYID 743

Query: 870 QISISQQ--NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK-SLVCLLIY 926
           ++ IS       + +YKT      EI  +      Q  +Y   +K    +  ++   L+Y
Sbjct: 744 RLDISGDGKRALVRDYKTGRPPRGEI-RLNGGRELQRCLYAFAVKALLGDDVAISASLLY 802

Query: 927 VSEPKVFIIPQNKLNKAFAEIS 948
             EP    +  +      AEI+
Sbjct: 803 PREP--VDLQLDDPEAVLAEIT 822


>gi|307290172|ref|ZP_07570091.1| hypothetical protein HMPREF9509_00478 [Enterococcus faecalis
           TX0411]
 gi|306498800|gb|EFM68298.1| hypothetical protein HMPREF9509_00478 [Enterococcus faecalis
           TX0411]
 gi|315145994|gb|EFT90010.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
          Length = 271

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 78/207 (37%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  SD +    G  +H   +    + E  ++   +   +        K
Sbjct: 38  EAAALAKLKGEWTPESDPKALLVGNYVHSYFES-PEIHEAFKEENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +   EV V+G+I       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIYQGE--KEVIVTGEI----GGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDMHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  I + K+     E+   I
Sbjct: 208 QTPSEAKLITISEEKMIYELEELKENI 234


>gi|88801967|ref|ZP_01117495.1| hypothetical protein PI23P_04872 [Polaribacter irgensii 23-P]
 gi|88782625|gb|EAR13802.1| hypothetical protein PI23P_04872 [Polaribacter irgensii 23-P]
          Length = 917

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/491 (11%), Positives = 138/491 (28%), Gaps = 83/491 (16%)

Query: 461 HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520
            E   ++   ++     I +   V + I  +   + + S +DF   IL   +  ++ ++ 
Sbjct: 392 GEENYIFIRKKQLEVAVIKESAEVRELISSIF--SPYTSINDFLERILNLIRFLKEEVTG 449

Query: 521 FGNEV----IDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
              E       V  +        E      +L     +L                 +++M
Sbjct: 450 LEKEYLFRFYTVFTQLKTLQKEYEYFTDLKTLTLFFKQL--IASETLSFQGEPLRGLQLM 507

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            +   + L+   + L  T   V      +   I   +    G+P +  +    +     L
Sbjct: 508 GMLETRVLDFENIILTSTNEGVLPAGSQQNSFIPFDVKLAFGLPTYREKDAIFSYHFFRL 567

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERV 695
           I+  K                     L   +H    + +KS   T  +M+          
Sbjct: 568 IQRAK-----------------NIFILYNTEHDAFGSGEKSRFVTQLEMMRPDIIQKNIA 610

Query: 696 KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
            K+  + +  K+            E T    +E   + +    +   L +P         
Sbjct: 611 PKVIPSKTELKEVSKN--------EATLERLKELATKGISPSALTNYLHNP--------- 653

Query: 756 ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--------------FTLPEHKR 801
            ++            + +         G ++H+ L  +                + +  +
Sbjct: 654 -ISFYKQKVLKIKEFDEVEETVAFNTLGTVVHEALDELYRPFVGKFLSLTNVVNMQKIAK 712

Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITR------------LLENP--MMTTAMSCDSYS 847
              I  +  +            L+  +              LL++    +    + ++ +
Sbjct: 713 DLVIKHFKLQFKNGDLKTGKNRLIFEVANRFVANFLSKEIDLLQDEKNQLKIIATEENLA 772

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH------VPQEIEHIPYTHI 901
                  I      I + G++D++      + I +YKT         VP+        H+
Sbjct: 773 ---TEITIEGIDFPIKLHGQVDRVDELNGVLRIIDYKTGMVAATNLRVPEFENVRDEKHL 829

Query: 902 A--QLSIYEKI 910
              Q+ +Y  +
Sbjct: 830 KAIQVLLYAYL 840


>gi|323138753|ref|ZP_08073818.1| hypothetical protein Met49242DRAFT_3206 [Methylocystis sp. ATCC
           49242]
 gi|322396000|gb|EFX98536.1| hypothetical protein Met49242DRAFT_3206 [Methylocystis sp. ATCC
           49242]
          Length = 884

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/492 (9%), Positives = 126/492 (25%), Gaps = 63/492 (12%)

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVR 573
             + ++    +  D +           +   ++ +   + L+     I R          
Sbjct: 337 LARLMAEDWPDGADHVSALRTAVATLAKGPDAAGEIGEAFLKGRALAIWRKALLAGPAAS 396

Query: 574 IMTVHTAKGLES------PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
           +         +        V ++  +       + ++ + +  S          +     
Sbjct: 397 LDATLETLKQDDGLEACVCVAWMPASALAASPRRFVRLLGLNSSRWPRGIAEDRLIPDHI 456

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMT----RASD----QLI-----ICKHSNTSNEK 674
               V D +       ++    L     T    RA      +L+     +      +  +
Sbjct: 457 IPTPVLDPLPVNLADRRDFETILATTADTVVLSRARRDSDGRLLGRSPLLAGMGGETYLR 516

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           ++          D      +           +  W  +  +   P +  +  +  +   +
Sbjct: 517 RNATPRHACSETDRLMARPQEFAADPQAVGAQGCWRDWRKAEITPHDGLVRADHPLVLAI 576

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL---- 790
             +         +  +      +          +    +L        G ++H +L    
Sbjct: 577 LSRTQSASSLRRLLRNPLSFVWVYAFGWREPQSSAEPLVLD---ALGIGDLVHMVLDRAL 633

Query: 791 ---QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT---RLLENPMMTT----- 839
              +    L     +    +       +    E +  +       R L++  +       
Sbjct: 634 RELETGGGLVSADMEAIEAAVAQAAQAVAADWESERPVPPAVIWGRTLDDARVMAGRALS 693

Query: 840 -----AMSCDSYSEVSV---------------SGKINCPKKDIIISGRIDQISISQQ--N 877
                     SY EV                 S  +  P     I+G ID++ IS     
Sbjct: 694 YGDDLLPGARSYGEVPFGGSEPKSDAETPWDASTPVTIPDTGFNIAGYIDRLDISGDGKR 753

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK-SLVCLLIYVSEPKVFIIP 936
             + +YKT      ++  +      Q  +Y   +K    +  ++   L+Y  EP    + 
Sbjct: 754 ALVRDYKTGRPPRGDV-RLNGGRELQRCLYAFAVKALLGDDVAISASLLYPREP--VDLQ 810

Query: 937 QNKLNKAFAEIS 948
            +      +EI+
Sbjct: 811 LDDPEAVLSEIT 822


>gi|154174406|ref|YP_001407580.1| hypothetical protein CCV52592_0909 [Campylobacter curvus 525.92]
 gi|112803770|gb|EAU01114.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 783

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 64/480 (13%), Positives = 129/480 (26%), Gaps = 87/480 (18%)

Query: 482 QHVIKYIHELIHIAQFCSPHD-FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE 540
           + + +       +       +     IL  +        R G +V + L    N     +
Sbjct: 348 KELFERFKAAYELPCEFEMFEGLVNEILALQDD-----KRVGKKVQNELFMLGNLARYFK 402

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
            +     +  +  L +                 +M V  ++G+      +VD   ++   
Sbjct: 403 FSLRQICEIFLMGLSRLSLDDVGGGKV-----GVMGVLESRGMRFDGAIIVDFNDELIPK 457

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           + I +M +   + +  G+  +  +   +      LI   KK                   
Sbjct: 458 RSINEMFLNSRVREKSGLISYAQRENLQRFYYESLINGAKK------------------- 498

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
             +   + +      S     +  V D+  +DE    +           +  E      E
Sbjct: 499 --VAISYVSNDESIASRFLKEFSFVKDARFSDEAYASL----LGKPGVALNLEPEEIVLE 552

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
           +    +E +   L      P+K +      I EP  +                       
Sbjct: 553 HDFFAQELSFSTLNLYLSCPRKYYYAKILAIPEPKTI-----------------GTAPAS 595

Query: 781 NRGLIIHKLL-QV----IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENP 835
             G  +HK L +      F   +            K A      E   +   I    EN 
Sbjct: 596 RLGEAVHKALCEYYQGEFFRRSQRFDVTDFKKCLGKFALSSLEFEILTVKFDIYAQYENE 655

Query: 836 MMTTAMSCDSY---SEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
            +             E +VSG      + + I G ID++        I +YK+     + 
Sbjct: 656 RLK----EGVRVLECEKNVSG---VEFEGVKIRGVIDRVDELSGQKMIIDYKSGKFEDKS 708

Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ----NKLNKAFAEIS 948
                     QL  Y+ +L      +       Y    ++ ++P      +L  A   + 
Sbjct: 709 ---------LQLPFYQALL-----GERCEA-FYYDLGGEMTLVPSRSSLEELRAAIERLK 753


>gi|227544342|ref|ZP_03974391.1| DNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300908421|ref|ZP_07125884.1| ATP-dependent DNA helicase [Lactobacillus reuteri SD2112]
 gi|227185684|gb|EEI65755.1| DNA helicase [Lactobacillus reuteri CF48-3A]
 gi|300893828|gb|EFK87186.1| ATP-dependent DNA helicase [Lactobacillus reuteri SD2112]
          Length = 775

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 68/225 (30%), Gaps = 18/225 (8%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +  ++I ++ +DEVQD    Q   ++                     +GD  Q+I++   
Sbjct: 531 RGQRDIRYVFVDEVQDYDAYQLAYLKY-----------RFPRAKFTLLGDLNQAIFT--- 576

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +      +          +K  +++L  S+RST  I      +    E  +    + 
Sbjct: 577 --HENSRSLLKQLGTMFD--PEKTKVVQLTKSYRSTKQITDFTKHILIDGEAIEAFEREG 632

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                +++    +     +      Q+D              + L Q+ +A+ +   +  
Sbjct: 633 NKPQVYQTKDEQEGVAAVINILNKYQNDHDAVAIIGKDLKDSEELYQKLNANNIKTTVIR 692

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           T +  +    I            D +++              + L
Sbjct: 693 TENQRLVKGPIVVPSYLAKGLEFDAVIVWNANDQQYHGNDERQLL 737


>gi|153870875|ref|ZP_02000181.1| UvrD/REP helicase [Beggiatoa sp. PS]
 gi|152072658|gb|EDN69818.1| UvrD/REP helicase [Beggiatoa sp. PS]
          Length = 165

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 50/155 (32%), Gaps = 7/155 (4%)

Query: 336 LPQESSASILARRIAYTISNMIG-TDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
           + +  +   +   +   I+ ++       +    + + A DI +LVR       +  +  
Sbjct: 14  INKGWAKQRIPYSVGNEIARLLTLAQKGEALIGDKPLAAGDIAILVRTNSQAFSMQKVLT 73

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
            L+    I  V   R  L     + ++  + + +    +D      L + +   S   + 
Sbjct: 74  QLQ----IPSVLYSRESLFTSHEVMEIERVLQAVADVGNDALLKAALTTDMLGLSGTQLH 129

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
            +     E +T     Q +      K    I+ I 
Sbjct: 130 HLMENETEWQTCLNRFQNYHQLWEHK--GFIQMIA 162


>gi|148544832|ref|YP_001272202.1| superfamily I DNA/RNA helicase-like protein [Lactobacillus reuteri
           DSM 20016]
 gi|184154172|ref|YP_001842513.1| DNA helicase [Lactobacillus reuteri JCM 1112]
 gi|148531866|gb|ABQ83865.1| Superfamily I DNA and RNA helicase-like protein [Lactobacillus
           reuteri DSM 20016]
 gi|183225516|dbj|BAG26033.1| DNA helicase [Lactobacillus reuteri JCM 1112]
          Length = 768

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 18/225 (8%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +  ++I ++ +DEVQD    Q    +                     +GD  Q+I++   
Sbjct: 524 RGQRDIRYVFVDEVQDYDAYQLAYFKY-----------RFPRAKFTLLGDLNQAIFT--- 569

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
              +      +          +K  +++L  S+RST  I      +    E  +    + 
Sbjct: 570 --HENSRSLLKQLGTMFD--PEKTKVVQLTKSYRSTKQITDFTKHILIDGEAIEAFEREG 625

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                +++    +     +      Q+D              + L Q+ +A+ +   +  
Sbjct: 626 NKPQVYQTKDEQEGVAAVINILNKYQNDHDAVAIIGKDLKDSEELYQKLNANNIKTTVIR 685

Query: 352 TISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           T +  +    I            D +++              + L
Sbjct: 686 TENQRLVKGPIVVPSYLAKGLEFDAVIVWNANDQQYHGNDERQLL 730


>gi|57651658|ref|YP_185839.1| exonuclease RexB [Staphylococcus aureus subsp. aureus COL]
 gi|151221049|ref|YP_001331871.1| exonuclease RexB [Staphylococcus aureus subsp. aureus str. Newman]
 gi|81694860|sp|Q5HHB8|ADDB_STAAC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764613|sp|A6QFH7|ADDB_STAAE RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|57285844|gb|AAW37938.1| exonuclease RexB [Staphylococcus aureus subsp. aureus COL]
 gi|150373849|dbj|BAF67109.1| exonuclease RexB [Staphylococcus aureus subsp. aureus str. Newman]
          Length = 1158

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 198/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRH---ETETVYEYIQKFANCGISKFQH 483
                                 + +D++F +        +   + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKGHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I               F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDL 1020


>gi|77919307|ref|YP_357122.1| hypothetical protein Pcar_1709 [Pelobacter carbinolicus DSM 2380]
 gi|77545390|gb|ABA88952.1| DNA helicase/exodeoxyribonuclease V, subunit B [Pelobacter
           carbinolicus DSM 2380]
          Length = 896

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/346 (11%), Positives = 90/346 (26%), Gaps = 55/346 (15%)

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                   +   V+++    A G++   ++++     VF         I  +L     +P
Sbjct: 454 DAVFQPEGSEGRVQVLGALEAAGMQFDALWVLGAHEDVFPAPARPHPFIPVALQRRLEMP 513

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
                                    +   RLL         QL++         ++    
Sbjct: 514 H-------------ADAARELDFAHKVAQRLLNAA-----PQLVVSWPEGLDGRERQPSP 555

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
             + +        E  +   L  ++        + S+  P             L D+   
Sbjct: 556 LIHQLPPIVPVLAESRQPAALIQAVAGRLEQIAD-SSGPPIEAGSRISGGTGILKDQALC 614

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV------- 792
           P + F+  +         +                      +RG ++H++L+        
Sbjct: 615 PFRAFARHRLGARALATAS----------------LGFDGLDRGSLVHRVLEWFWKDIGN 658

Query: 793 ---IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
              +  L     +  +  Y  +  +     E +       + LE+  +   +      E 
Sbjct: 659 WQSLTALDSAALQQLLVKYIDQALEEL-EAERRVPFSKSQKHLESSRLLALLGEWLAIEA 717

Query: 850 --------SVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTH 886
                   ++          + +  RID+I         I +YKT 
Sbjct: 718 KRPTFTVDTLEAWHREKFGPLTLQTRIDRIDRLADGSQVIIDYKTG 763


>gi|283470165|emb|CAQ49376.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ST398]
          Length = 1158

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 94/752 (12%), Positives = 197/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTTSYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F I            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNIEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I               F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 1020


>gi|257081604|ref|ZP_05575965.1| hypothetical protein EFJG_00048 [Enterococcus faecalis E1Sol]
 gi|256989634|gb|EEU76936.1| hypothetical protein EFJG_00048 [Enterococcus faecalis E1Sol]
          Length = 271

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 71/207 (34%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  +D +    G  +H   +    + E  ++       +        K
Sbjct: 38  EAAALAKLKGEWTPENDPKALLVGNYVHSYFES-PEIHEAFKEENKNKMFSSRKPFALLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +          +       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIYQGEK------EVIVTGEIGGAVWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDMHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|225012051|ref|ZP_03702488.1| conserved hypothetical protein [Flavobacteria bacterium MS024-2A]
 gi|225003606|gb|EEG41579.1| conserved hypothetical protein [Flavobacteria bacterium MS024-2A]
          Length = 907

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/502 (11%), Positives = 147/502 (29%), Gaps = 104/502 (20%)

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
           ++            +  + +L+   +    ++         K ++    RF     ++L 
Sbjct: 407 KEILFSPFETVPLFLDRMQKLMEAIKKYYLNE------EEDKLQEYNCERFVLIWEEIL- 459

Query: 531 EFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVF 589
             ++     E+   SSL E+    E          S +  ++++IM +   + L+   V 
Sbjct: 460 -LMHS----EKPYLSSLNEVKMVFEMLIQNQTLDFSGDALSKLQIMGILETRLLDFDNVI 514

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           +      +          I   +    G+  +      ++++ +                
Sbjct: 515 ITHVNEGIIPFGKTSVSWIPFDVKKKFGMNTF----IEQDHLYAYH-------------- 556

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             +  + RA    ++    N + E   +      +V   +    + +       +  +  
Sbjct: 557 -FFRLLQRAKKVFLLY---NANPEGLFSGEKSRFLVQLEYFKSPKHELTFRQVDLPFNNL 612

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
           I         +   ++  E  K+      + + + +P          + P          
Sbjct: 613 IDSVKPAIKTKAVLVQLNEMAKEGFSPSSLTQYIRNPYLFYEQRMLKIKP---------- 662

Query: 770 LESLLSDNQTFNRGLIIHKLLQ--VIFTLPEHKRKNFITSYCTKNAKLWPA--------- 818
           L++L  +    ++G I+HK+L+   +  + +    N       K  +             
Sbjct: 663 LDTLELNLSAMDKGTIMHKVLEVLYLPFVNQSLSLNDFDQMLHKLPETLKDCFNDLYKND 722

Query: 819 -----------KEYKNLLLS---------------ITRLLENPMMTTAMSCDSYSEVSVS 852
                      +  + +L S               I + LE+             EV   
Sbjct: 723 DHRTGKNHIVFRVMEQILRSFILMERELVSQGNTLIIKALEHIFCKPLWVEKIKKEV--- 779

Query: 853 GKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE---------HIPYTHIAQ 903
                     +  G +D+I      +   +YKT +    ++              + + Q
Sbjct: 780 ----------VFKGTVDRIDSLNGVLRFVDYKTGNVEANDLAYYEMSEVTSDPKKSALFQ 829

Query: 904 LSIYEKILKDSYPNKSLVCLLI 925
           + +Y  +LK+ + N+  +  +I
Sbjct: 830 VFLYSYVLKEEFSNQDCLAGVI 851


>gi|227522702|ref|ZP_03952751.1| prophage Lp1 protein 19 [Lactobacillus hilgardii ATCC 8290]
 gi|227090150|gb|EEI25462.1| prophage Lp1 protein 19 [Lactobacillus hilgardii ATCC 8290]
          Length = 273

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 76/236 (32%), Gaps = 41/236 (17%)

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLES---------LLSDNQTFNRGLIIHKLLQVIFT 795
               +   +   ++ S          E+           SD      G  +H   +    
Sbjct: 13  QNYYDPSTDWEYMSFSRFKQFQTCEAETLAELNGQWKPTSDETALLVGNYLHSYFE--SP 70

Query: 796 LPEHKRKNFITSYCTKNAK--LWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853
               K          K  K    P  ++K     I  L  + +                 
Sbjct: 71  ESHTKFMETHPQILAKTGKNKGKPKAQFKTADSMIEALTADQVFNELYQGTK------ET 124

Query: 854 KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPYT------HIAQ 903
            +      ++  G+ID ++++ +  +  + KT   + Q    E++H+         +  Q
Sbjct: 125 IVTGKFGGMLWKGKIDCLNLADK--YFVDLKTTRDLHQGYYNEVDHLREDFVSYRQYDLQ 182

Query: 904 LSIYEKILKDSYPNKSLVC--LLIYVS-----EPKVFIIPQNKLNKAFAEISTKIP 952
           ++IY ++++ ++    + C   ++ V+     +  +  IP  +L  A  +   ++P
Sbjct: 183 MAIYRELIQQTFG---VDCQPYIVAVTKQTPPDKAILEIPDEQLKAALDDAQKRLP 235


>gi|222152847|ref|YP_002562024.1| ATP-dependent exonuclease subunit B [Streptococcus uberis 0140J]
 gi|251764630|sp|B9DRU9|ADDB_STRU0 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|222113660|emb|CAR41581.1| putative ATP-dependent exonuclease subunit B [Streptococcus uberis
           0140J]
          Length = 1086

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 83/643 (12%), Positives = 174/643 (27%), Gaps = 95/643 (14%)

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  IA  I   +              + KDILVL+    D          + + Y 
Sbjct: 303 QKEEIENIARDIRQKLNEG----------YRYKDILVLL---GDVEAYQLQVGPIFDKYD 349

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-------------- 447
           I         ++ H  ++ + +L             + +LKS +                
Sbjct: 350 IPYYLGKAESMSHHPLVQFMDSLENCRRYNWRKEDIINLLKSRMLGDFTIRECDQFESYL 409

Query: 448 ----------FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE-----LI 492
                     FS+D       Q++E     + I        S      K   +     L 
Sbjct: 410 NYADINGFTAFSKDFTANTFNQKNEKGYDLDKINLIRKYLFSHLNQFFKSRAQKGSNILN 469

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID----VLDEFLNFTLRNEQNSYSSLQ 548
           H  QF S  DF +      + +         EV      +L+ F N           +L 
Sbjct: 470 HFLQFLSDIDFVSSFQRLSQKQSALQQEKDEEVWKSFTSILESFYNIFKDETLTQELTLM 529

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            + S ++       R   A  + V + +    +     +V+ +      F     +   I
Sbjct: 530 LIKSAMQAAD---YRVVPATLDVVSVKSYDLVEPHSKSLVYALGLTRTHFPKTVQQTGLI 586

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ----EEYNRLLY-------VGMTR 657
                               ++I +    H    +      +   L Y       V    
Sbjct: 587 SDQERAKTNEKWDSHHRFDISSIENSKKNHYTALSLFNAATDKLVLSYPMVLNEVVEEAS 646

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI---KLTNSINKDEWIAYEW 714
              +L+         ++K+      + + +      +   +    LT  + ++E   +  
Sbjct: 647 PYLKLLHSFGIPIVEKQKNTFSDLENGIGNYKSLLSQWIALNQEPLTEELYQEEKSFWLV 706

Query: 715 STHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPYILNPSTIDTKGKTNLES 772
            + + +     ++ T  +        +       IK   ++P  L+ S +        + 
Sbjct: 707 MSRYLKKQLAAKKLTFPEQKSHLATSRLSPEVLAIKYPDHQPLSLSSSALTVYHDNQYKY 766

Query: 773 LLS-----------DNQTFNRGLIIHKLLQVIFT----------LPEHKRKNFITSYCTK 811
            L                 + G  +H++ + +            + E  ++         
Sbjct: 767 FLQYVLGLQELESIHPDARHHGTYLHRVFEYVVDDQRSIPFDDKIEEAIQRTNQERLFQT 826

Query: 812 NAKLWPAKEYK-NLLLSITRLLENPMMTTAMSCDSYS-EVSVSGKINCPKKDIIISGRID 869
             +      +  +LL  I +      +         S E           + + ++G ID
Sbjct: 827 YYQSDAESRFSLSLLEDIAK--STASIFPITPTKVLSQEERFQLHF---DEKVRVNGIID 881

Query: 870 QISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
           +I         I +YK+   V  +I        +QL  Y + L
Sbjct: 882 RIDQLDDGSIGIVDYKSSQTVF-DIGKFYNGLNSQLPTYLEAL 923


>gi|154485116|ref|ZP_02027564.1| hypothetical protein EUBVEN_02839 [Eubacterium ventriosum ATCC
           27560]
 gi|149734069|gb|EDM50188.1| hypothetical protein EUBVEN_02839 [Eubacterium ventriosum ATCC
           27560]
          Length = 1144

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 75/684 (10%), Positives = 192/684 (28%), Gaps = 115/684 (16%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
              A  +A  IS +I           +  +  DI V+     D            +   I
Sbjct: 329 REEAAYVAGRISELI---------VDKGYRYNDIAVIT---GDMDGYYRYIEEEFSKNNI 376

Query: 403 SVVGNDRFILTDHLAIKDLMA----------------LGRFILSQED----DLSFVCMLK 442
               + +  +  +  +  + A                L R      D    D+    +L+
Sbjct: 377 PAFIDHKHNIASNPFVDGIKAAIEIVEKDFSYETVFHLIRLGFLPIDREAVDIMENYVLQ 436

Query: 443 SPLFNF--------------SEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
           S    F              + +++  +   R +   +   +++      +  +   K +
Sbjct: 437 SGRRGFKSYGRLWEKAYKGMTAEELDMVNQAREKLVEIIRPLREELKKKKATVREYTKAV 496

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQ 548
           ++ +         D + +    +    +  ++   +V   +   L+  +    +   +++
Sbjct: 497 YQFVQANNMQRQIDDYRIEFQNQGEISR--AKEYEQVYVTIITLLDRIVELMGDEVLTIK 554

Query: 549 ELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE-SPVVFLVDTGSQVFSH-KHIKK 605
           E    L+    ++K        + V +  +   +  +   ++F +     +         
Sbjct: 555 EYKQILQAGFESVKVGIIPPGLDTVMVGDIERTRLKDTKRIIFFMGVNDGIIPKAGQAGG 614

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           +               +  + + N        +   +   E   + +             
Sbjct: 615 IITDTDREFLEKNNYILAPTATDNVFKQKFYLYTIFAKPTEKMCITFSK----------S 664

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY------EWSTHHP 719
                +  K     T  ++  +    DE   +I L     + + + Y      E+S    
Sbjct: 665 GSDGATRRKSYIISTLMNLFENLKIIDEDESEITLNQVTTRSKALDYLSQNIYEYSKEGD 724

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP--------------YILNPSTIDTK 765
                E   T+ +  +  K+   +F         P                +  + ++  
Sbjct: 725 SGIFKELMATVMKNKEYSKVINLMFDGAFYSAKNPILDENVARQLYGNKENIGITRLERF 784

Query: 766 GKTN-----------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
                           E    +   F+ G + H  ++  F         +      K+  
Sbjct: 785 AACAYSQFLNNGLKLGERKKFELAAFDIGNLYHSAIKEFFDTINTNNIKWADLDDKKSEN 844

Query: 815 LWPAKEYKNLLLSITRLLENPMMTTAMSCD----------SYSEVSVSGKINCPKKDIII 864
           +      K +       L +   +  +             +  +   SG     + ++ I
Sbjct: 845 IINDSIEKVMEQYENDALNDIARSAFIKKQVKDTSTETVNALVKHIRSGNFLPREYELRI 904

Query: 865 -SGRIDQI--SISQQNIFI--FEYKTHHHVPQEIEHIPYTHIAQLSIYEKI----LKDSY 915
             GR+D++       NI++   +YK+ + V   +         QL +Y K     +K + 
Sbjct: 905 AHGRVDRVDTFEDGNNIYVKVIDYKSGNKVF-NVTETFLGLQMQLMVYLKDTVDYIKKNN 963

Query: 916 PNKSL--VCLLIY-VSEPKVFIIP 936
           P+K++     L + V +P V  I 
Sbjct: 964 PDKNVYPAAGLYFHVYDPYVSEID 987


>gi|329733942|gb|EGG70264.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            21193]
          Length = 1158

 Score = 62.2 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 89/752 (11%), Positives = 187/752 (24%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I               F           +  ++  +E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMSERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             +   + YV MTRA   +        S+        +   +   F+  E     +     
Sbjct: 634  MDEAFVCYVAMTRARQDVTFSYSLMGSSGDDKEISPFLTQIQALFNQLEITNIPRYHEVA 693

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                    + +            +            + +      +    Y+++  T D 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 765  KGKTNLESLLSDNQTFNR--------------------------------------GLII 786
            +     E+L  D                                            G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    K  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNKALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 1020


>gi|290959977|ref|YP_003491159.1| hypothetical protein SCAB_55921 [Streptomyces scabiei 87.22]
 gi|260649503|emb|CBG72618.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 765

 Score = 62.2 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 85/269 (31%), Gaps = 38/269 (14%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
              P  +   ++   S S   G  +  + A  L+ +       E        F+      
Sbjct: 387 LLRPRARKLLLDALWSRSGAAGRHSDPELAAELRSSFDEDITSE------DDFIAFLDAW 440

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
              +  + + +   D +   + ++        R     + +  L+   +A  +    +  
Sbjct: 441 WPELTPRGVLEAMSDERRLGRWARRILNPGEVRRVARSLKREGLSVHDVA--VLDELQAV 498

Query: 141 K----KKNCVLDFE--DLIINTNDLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
                +     D +  D +    +L+    + +   A    +   E  H+++DE QD + 
Sbjct: 499 LGAPARPRKKRDHDPLDQLTGLEELMPVREETQRERAERLAQERTEYAHVIVDEAQDLTP 558

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +QW ++                  T   VGD  QS      ++P      +         
Sbjct: 559 MQWRMV-----------GRRGRHATWTVVGDPAQS----SWSDPDEAAEARDE-----AL 598

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFS 279
             +      L +++R+ A+I  +  KV +
Sbjct: 599 GSRPRRRFTLTVNYRNPAEIAELAAKVLA 627


>gi|118593730|ref|ZP_01551099.1| hypothetical protein SIAM614_03453 [Stappia aggregata IAM 12614]
 gi|118433640|gb|EAV40303.1| hypothetical protein SIAM614_03453 [Stappia aggregata IAM 12614]
          Length = 429

 Score = 62.2 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/349 (9%), Positives = 96/349 (27%), Gaps = 42/349 (12%)

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
                V+I+    A+        L      ++  +      +   +  D G+     +  
Sbjct: 6   PGDQRVQILGPMEARLQTFDFAILGGLNEGIWPQRTRNDPWLNRPMKRDMGLEPPERRLG 65

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
           +  +  +  +                        ++++ + + +        R    +  
Sbjct: 66  AAAHDFAQGMGA---------------------RRVLLSRAARSDGAPTVASRWLQRL-- 102

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
                      +          + A       PE           + +   +      + 
Sbjct: 103 ----TTLAGPDLTKQLEAQGAIYSALAAQLDRPEGAVRPASRPQPRPLLAARPKSLSITE 158

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ-VIFTLPEHKRKNFI 805
           I+  I +PY +    +       ++ +  +    ++G +IH  L   + T         +
Sbjct: 159 IERLIRDPYAIFARHV--LELQPVDPIGGEPGAADKGNLIHDALADFLLTWTGPFDDKAV 216

Query: 806 TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI--- 862
            +      +L+   +    + ++       +    ++ ++     VS +       +   
Sbjct: 217 KALTEIGEELFEPLDAFPAIRALWWPRFQKIAAGFVAYEARRSQHVSQRFLEIGGGVEMK 276

Query: 863 ------IISGRIDQI-SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
                  + GR D+I  +S   + + +YKT     Q  + +      QL
Sbjct: 277 LPGFDFRLRGRADRIDLLSGGGLSVVDYKTGQVPSQ--KQVDALLSPQL 323


>gi|300771530|ref|ZP_07081405.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761519|gb|EFK58340.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 979

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/449 (10%), Positives = 125/449 (27%), Gaps = 66/449 (14%)

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
           +        FQ   + + + + + +   S  ++       ++  +Q  +    + I  L+
Sbjct: 433 ERLVQQKGIFQFFFQKVTDPLSLTRELKSLLEYLAKRHLEQQNLRQLDAELFVKTIQELN 492

Query: 531 EFLNFTLRNEQNSYSSLQ-ELISELEQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPV 587
              +   ++ Q S ++      + L +          +    + +++M +   + L    
Sbjct: 493 RMHDTLAQHIQTSGNNFAPRFAAALIRKALEAISVPLSGDPLSGLQVMGLLETRNLNFDH 552

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V ++     +     +    I  SL    G+P+                    ++     
Sbjct: 553 VVILGLNDGIIPQNSVGNSFIPDSLRRAYGLPV-------------------LENQDAIS 593

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
             + Y  + RA     +       +      R    +                +N   + 
Sbjct: 594 AYIFYRLVQRAKKLSFVYNSLTDESNTGEPSRFLKQL-------------EFESNFEFRY 640

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGK 767
           +    +      +   + +   I   +      ++  S           ++         
Sbjct: 641 QDQHLQIKVEDQQELVIPKTTAIMDKLGLYLSGERTLSASALTTYIANPIDFFYKYVAEI 700

Query: 768 TNLESLLSDNQTFNRGLIIHKLLQVI------------FTLPEHKRKNFITSYCTKNAKL 815
           +  E +    +  N G I+H  ++                    KRK           K 
Sbjct: 701 SEPEEVNEVVEANNLGTILHGTMEDFYNQLKAESNFISPERIAQKRKELSKLIEHNFIKE 760

Query: 816 WPAKEYKNL----LLSITR---------LLENPMMTTAMSCDSYSE---VSVSGKINCPK 859
           +  +  K +    +  +           +L++       +     E   V      +  +
Sbjct: 761 FYPENTKKIHFTGIQRVIMAIVKEYIHIILDHDERAAPFTILQMEEEMTVPFEFNDSNGR 820

Query: 860 KDII-ISGRIDQISISQQNIF-IFEYKTH 886
           K +I + G ID++ I Q  +  I +YKT 
Sbjct: 821 KQVIHMKGIIDRVDIGQDGVTRIVDYKTG 849


>gi|15923956|ref|NP_371490.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|15926555|ref|NP_374088.1| hypothetical protein SA0827 [Staphylococcus aureus subsp. aureus
            N315]
 gi|148267400|ref|YP_001246343.1| ATP-dependent nuclease subunit AddB [Staphylococcus aureus subsp.
            aureus JH9]
 gi|150393453|ref|YP_001316128.1| ATP-dependent nuclease subunit AddB [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156979292|ref|YP_001441551.1| hypothetical protein SAHV_0961 [Staphylococcus aureus subsp. aureus
            Mu3]
 gi|253316127|ref|ZP_04839340.1| hypothetical protein SauraC_08282 [Staphylococcus aureus subsp.
            aureus str. CF-Marseille]
 gi|255005756|ref|ZP_05144357.2| hypothetical protein SauraM_04785 [Staphylococcus aureus subsp.
            aureus Mu50-omega]
 gi|257795299|ref|ZP_05644278.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9781]
 gi|258406948|ref|ZP_05680101.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9763]
 gi|258421916|ref|ZP_05684837.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9719]
 gi|258441525|ref|ZP_05690885.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8115]
 gi|258447224|ref|ZP_05695373.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A6300]
 gi|258449984|ref|ZP_05698082.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A6224]
 gi|258455497|ref|ZP_05703456.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A5937]
 gi|269202581|ref|YP_003281850.1| exonuclease RexB [Staphylococcus aureus subsp. aureus ED98]
 gi|282893993|ref|ZP_06302224.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8117]
 gi|282927189|ref|ZP_06334811.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A10102]
 gi|295405772|ref|ZP_06815581.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8819]
 gi|296276178|ref|ZP_06858685.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus
            aureus subsp. aureus MR1]
 gi|297245363|ref|ZP_06929234.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8796]
 gi|81705954|sp|Q7A6H5|ADDB_STAAN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|81781870|sp|Q99VC4|ADDB_STAAM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764610|sp|A7X0I1|ADDB_STAA1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764611|sp|A6U073|ADDB_STAA2 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764612|sp|A5IRE4|ADDB_STAA9 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|13700770|dbj|BAB42066.1| SA0827 [Staphylococcus aureus subsp. aureus N315]
 gi|14246735|dbj|BAB57128.1| similar to ATP-dependent nuclease subunit B [Staphylococcus aureus
            subsp. aureus Mu50]
 gi|147740469|gb|ABQ48767.1| DNA helicase/exodeoxyribonuclease V, subunit B [Staphylococcus aureus
            subsp. aureus JH9]
 gi|149945905|gb|ABR51841.1| ATP-dependent nuclease subunit AddB [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156721427|dbj|BAF77844.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789271|gb|EEV27611.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9781]
 gi|257841487|gb|EEV65928.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9763]
 gi|257842249|gb|EEV66677.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9719]
 gi|257852315|gb|EEV76241.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8115]
 gi|257853972|gb|EEV76926.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A6300]
 gi|257856904|gb|EEV79807.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A6224]
 gi|257862315|gb|EEV85084.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A5937]
 gi|262074871|gb|ACY10844.1| exonuclease RexB [Staphylococcus aureus subsp. aureus ED98]
 gi|282590878|gb|EFB95953.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A10102]
 gi|282763479|gb|EFC03608.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8117]
 gi|285816645|gb|ADC37132.1| ATP-dependent nuclease, subunit B [Staphylococcus aureus 04-02981]
 gi|294969207|gb|EFG45227.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8819]
 gi|297177666|gb|EFH36916.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A8796]
 gi|312829363|emb|CBX34205.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ECT-R 2]
 gi|315130453|gb|EFT86440.1| hypothetical protein CGSSa03_03493 [Staphylococcus aureus subsp.
            aureus CGS03]
 gi|329728303|gb|EGG64742.1| helicase-exonuclease AddAB, AddB subunit [Staphylococcus aureus
            subsp. aureus 21172]
          Length = 1157

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 197/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I               F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDL 1020


>gi|12657916|ref|NP_075329.1| gp62 [Mycobacterium phage Bxb1]
 gi|12584057|gb|AAG59767.1| gp62 [Mycobacterium phage Bxb1]
          Length = 295

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 49/219 (22%), Gaps = 69/219 (31%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSDNQT--------FNRGLIIHKLLQVI----F 794
            +  I E    + S +    K      L+ ++           +G  +H + +       
Sbjct: 29  AREYIYEKKPRSVSQLSQFDKCPFSWKLARHERVWRRPAAWLQQGTGVHAVAEKYMLSKL 88

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS---- 850
                 R+     +  + A        +            P +    +   Y        
Sbjct: 89  AGSPLTREECYEIFKAEYADGINEATEE-----------TPNLGWWFASGRYRGQEDIER 137

Query: 851 ---------------------------------VSGKINCPKKDIIISGRIDQISISQQN 877
                                            V   I      I I G ID +      
Sbjct: 138 RWDIGLEQVDKVIDWIDSIPPDGVWHTPDGVPGVELPIEFELDGIEIRGYIDLVLKLGDE 197

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
           I I + KT      +          QL++Y   L + Y 
Sbjct: 198 IRIRDLKTGLKPGDD---------FQLAVYGLALNEIYG 227


>gi|121602115|ref|YP_989603.1| double-strand break repair protein AddB [Bartonella bacilliformis
           KC583]
 gi|120614292|gb|ABM44893.1| double-strand break repair protein AddB [Bartonella bacilliformis
           KC583]
          Length = 1047

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 54/482 (11%), Positives = 127/482 (26%), Gaps = 50/482 (10%)

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--- 504
                +  +        ++     + A          +K +  LI   + C+ ++     
Sbjct: 499 IKTRTLNSLNANNLNDCSLDPQKSEEARLLCHLLVKAVKPLVSLIQQDRECTINETIIAT 558

Query: 505 TLILGAKKGRQQ--FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS-ELEQYPPTI 561
             +L              + +E  + L  FL   + ++      L E  +          
Sbjct: 559 VEVLENFGRDDNHSLAHLYQDEAGEALSTFLRELVNDQSGLKFHLYEWPAIFSALIATRS 618

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                  H+ + I     ++      V +       +         +   +     +   
Sbjct: 619 VSPAPGGHSRLFIWGTLESRLQTVDTVVIGGLNEGSWPVTTRNDAFLSRPMKMMLTLEPP 678

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
             +     +     +   K            V M+RA+    +              R  
Sbjct: 679 EKRIGLSAHDFQWAMGMDK------------VIMSRATRVNHVPSV---------PSRWL 717

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT-PLEREETIKQLMDEQKIP 740
             +         +    +    +   + +         E   P+   E   +     +I 
Sbjct: 718 QRLETVIGQQVWKQICARGNTLLYWAKILDTTNMISFVERPCPIPPLEMRPRHFSITEIE 777

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEH 799
                P      +   L P          L+ L+ D     RG + H +L      +   
Sbjct: 778 TLRQDPYAIYAKKILRLKP----------LKPLIHDPCNTERGTLYHAILSAFCTRIKNP 827

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLEN--PMM----TTAMSCDSYSEVSVS 852
              + + +  T   + +      + + +I   + EN  P++     +      ++EV  +
Sbjct: 828 HATDALDTLLTIGREEFDKLNLPSDIEAIWWPMFENLAPLLIQWEQSLGPRKRHAEVE-A 886

Query: 853 GKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            K       + +SGR D+I I       I ++K           +      QL++   +L
Sbjct: 887 QKTPIGTTGVTLSGRADRIDILPGKMAEILDFKISTPPSST--QVLTLLSPQLALEAALL 944

Query: 912 KD 913
             
Sbjct: 945 MQ 946


>gi|288919500|ref|ZP_06413831.1| ATP-dependent DNA helicase, UvrD/REP family [Frankia sp. EUN1f]
 gi|288349103|gb|EFC83349.1| ATP-dependent DNA helicase, UvrD/REP family [Frankia sp. EUN1f]
          Length = 706

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 62/205 (30%), Gaps = 23/205 (11%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             H+++DE QD   +QW ++R+L             P  LF VGD  Q IY    A    
Sbjct: 450 FPHVVVDEAQDLHPVQWRLLRALV---------PDRPNDLFIVGDAHQRIYDRSVALTTV 500

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +  +                  L L++R++  ILT    +         L   S +   
Sbjct: 501 GINVR-------------GRSYRLRLNYRTSERILTWAVALLD-GRAVDDLDGGSDSLEG 546

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
           +RS+  G            +            W        +   A+   R      S +
Sbjct: 547 YRSAFRGVQDPAAHGYPTTAAELDGLVSTVRGWIDGGVRPAEIGVAARTRRMTDDVASAL 606

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVR 381
                  S   ++     +I  + R
Sbjct: 607 REAGIEPSPLDRQRRGGVEIGTMHR 631


>gi|189466950|ref|ZP_03015735.1| hypothetical protein BACINT_03332 [Bacteroides intestinalis DSM
           17393]
 gi|189435214|gb|EDV04199.1| hypothetical protein BACINT_03332 [Bacteroides intestinalis DSM
           17393]
          Length = 690

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 85/244 (34%), Gaps = 34/244 (13%)

Query: 140 AKKKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             +KN +L++ DL  +   +  L                + H+LIDE+QD S IQ++VI+
Sbjct: 435 KLRKNRILEYTDLAPLTYLHLALDGNIT--------QCRVKHLLIDEMQDYSPIQYKVIQ 486

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L             P     +GD  QS+  +  +    +   ++              +
Sbjct: 487 KLY------------PCRKTILGDAFQSVNPYSSSTAGMI---RKAF--------IMGEV 523

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT-TIRHRSSRIGQVGTVQLWEQVVS 316
           ++L  S+RST +I     K+ +  E    +        ++  ++     G + L      
Sbjct: 524 MKLCKSYRSTFEITDFAQKIQTNNELEPVMRHGEFPSVLQFENTEKENSGIIDLISSFKK 583

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                     ++     +      + +     ++   S  +    + S+   + ++  ++
Sbjct: 584 SGYKSLGIVCKTEAQAKELAESLQTYTAEVYFLSNQSSAFVKGIIVTSSHMAKGLEFDEV 643

Query: 377 LVLV 380
           ++  
Sbjct: 644 IIPY 647


>gi|251782154|ref|YP_002996456.1| ATP-dependent nuclease subunit B [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390783|dbj|BAH81242.1| ATP-dependent nuclease subunit B [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 1074

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 79/713 (11%), Positives = 189/713 (26%), Gaps = 108/713 (15%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                ++     L ++    I   +       +               + KD+LVL+   
Sbjct: 276 EASHDFSQVDWQLEEKDKEDIYLWQSHQQKEEIEHVAKAIREKLYEGYRYKDMLVLL--- 332

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            D          + + ++I         +T H  ++ + +L R           + +LKS
Sbjct: 333 GDVDAYQLQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSQRYNWRREDILNLLKS 392

Query: 444 PLFN-FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
            LF  F++ D+ +        +              S   + ++ ++E+   A F S   
Sbjct: 393 GLFGRFADSDLDRFEEYLQFADIKGFTKFSRPFTINSSRHYPLELLNEVRE-AVFSSLQA 451

Query: 503 FF--TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSS-------------- 546
            F     LG     +        ++ + +       L  E+N                  
Sbjct: 452 LFKSQKQLGTSLLDKLMTFFKDVQLAENMKSLGQNELEIEKNEEVWKTFTGVLTSFYQIF 511

Query: 547 ------LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
                 L + +S ++    +          + V I +    +    P V+ +      F 
Sbjct: 512 GQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQPHSKPFVYAIGLTQSHFP 571

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            +  +   +               Q     +I         K   +    LL        
Sbjct: 572 KQVKETGLLSDQERARINEITDSFQHFDIGSI------ENSKKNHQTALSLLNAAT---- 621

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            +L++   +  +           +++       ++        + +   + A        
Sbjct: 622 QELVLSVPAVVNEFSDDLSPYLKELMSFGLPLIDKGSNRFSYAASDIGNYKALLSRLVDL 681

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFS---------PIKNDINEPYILNPSTIDTKGKTNL 770
               +  + T +         + L           P+ +D      L    I+ +  ++ 
Sbjct: 682 NREAIVADMTEQDKTFWTVALRYLRRQLRHHQVTLPMLDDHLVTKPLASEVIEARFPSDR 741

Query: 771 ESLLSD----------------------------NQTFNRGLIIHKLLQVI--FTLPEHK 800
              LS                                   G  +H++ +++         
Sbjct: 742 PLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMTDHTAASF 801

Query: 801 RKNFITSYCTKN-------------AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
                 +    N                +     +++  S   +L      T     S  
Sbjct: 802 DSKLAQAIHQTNQEKEFQYIYQDSAEDRFSLDLLEDIAKSTASILRLNQNMTV----SRQ 857

Query: 848 EVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           E   +  +      +++ G ID+I   S  ++ I +YK+  +   +I         QL  
Sbjct: 858 EEPFALHVT---DQVVVHGIIDRIDQLSDGSLGIVDYKSSANQF-DIGKFYNGLSPQLVT 913

Query: 907 YEKILKDSYP----NKSLVCLLIYVSEPKVF-----IIPQNKLNKAFAEISTK 950
           Y   L+              + +++ EPK+       +    +   + E++ K
Sbjct: 914 YLAALQQQLGPDDLGHLFGAMYLHLQEPKLDLASFKALDDKLVESIYKELTYK 966


>gi|118470029|ref|YP_885646.1| UvrD/Rep helicase [Mycobacterium smegmatis str. MC2 155]
 gi|118171316|gb|ABK72212.1| UvrD/Rep helicase [Mycobacterium smegmatis str. MC2 155]
          Length = 737

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 98/339 (28%), Gaps = 33/339 (9%)

Query: 67  SLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
           ++      +        + T    +    +   L        +        +  + +   
Sbjct: 380 AIWREVVQSVDSGLDTKLATPVFLES-EYVAVVLANRVTSLEQYAKVARPGRGVRLSRPQ 438

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI--NHILIDE 184
                 L   +    + +  + F +++    + L+       +R + D     +H++IDE
Sbjct: 439 RIAVWKLIEAFRRRSQMDESVSFPEVLALAAEALR-------VRAERDGTYLADHVIIDE 491

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD     W ++R+L  +          P  LF   D  Q IY      P  + R     
Sbjct: 492 AQDLHATHWALLRALVAE---------GPNDLFIAEDSHQRIYG----SPVVLSRF---- 534

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
                          L L++R+TA  L     V S  E    L +   +T  +RS+R G 
Sbjct: 535 -----GVKIVGRSRRLTLNYRTTAQNLHFAVSVLSGAEYR-DLEQGEESTSDYRSARNGP 588

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364
              +     + ++ ++     +             +  +         +  +        
Sbjct: 589 APELISCPDLATELETVATKIKSWLVEDGVEPESIAVLTRSQDERDRFVRGLGERGVPAR 648

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
              K V      LV+   R      + +     ++  + 
Sbjct: 649 AVDKNVPTPGQPLVMTMHRAKGMEFSRVILAGADEKHVP 687



 Score = 41.4 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 28/99 (28%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           +MT+H AKG+E   V L     +                                   + 
Sbjct: 662 VMTMHRAKGMEFSRVILAGADEKHVP----------------------------LPATLR 693

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
           ++ +  +         LLYV  +RA D L++      S 
Sbjct: 694 NVPEEERAEALLRERSLLYVASSRARDALVVTWSGKRSE 732


>gi|49485742|ref|YP_042963.1| hypothetical protein SAS0836 [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|81649661|sp|Q6GAW0|ADDB_STAAS RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|49244185|emb|CAG42611.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            MSSA476]
          Length = 1158

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 197/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I               F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               VFLV                I                 K      +  +       Q
Sbjct: 586  KQHVFLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + Y+ MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYIAMTRARQDVTFSYRLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDL 1020


>gi|148251711|ref|YP_001236296.1| DNA helicase/exodeoxyribonuclease V subunit B [Bradyrhizobium sp.
           BTAi1]
 gi|146403884|gb|ABQ32390.1| DNA helicase/exodeoxyribonuclease V, subunit B [Bradyrhizobium sp.
           BTAi1]
          Length = 1048

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/374 (10%), Positives = 98/374 (26%), Gaps = 46/374 (12%)

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
               +     R    +  +++I     A+ +++  + +      V+         +   +
Sbjct: 603 FHTAFSDRAVRRPERHGAQLQIYGPLEARLMQADRMIIGGLIEGVWPPAPRIDPWLSRPM 662

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
               G+ +   +     +  + L+                        ++I+   + +  
Sbjct: 663 RHQLGLDLPERRIGLSAHDFAQLLGA---------------------PEVILTHAAKSGG 701

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE-NTPLEREETIK 731
                 R  + +   +  +  +    +    +   E +         E   P        
Sbjct: 702 APAVASRFLHRLEAVAGADRWKAATARGETYVRYAEVLDQPPEVKPVEQPAPKPPLAARP 761

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
             M    I   L  P          L+P          L+ +       +RG  IH+ + 
Sbjct: 762 LRMSVTAIEDWLRDPYTIFARYILKLDP----------LDPVDMPLSAADRGSAIHEAIG 811

Query: 792 VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEV 849
                              +  +   A   +              +    +    +  E 
Sbjct: 812 EFTQTYADALPPDPAPVLRQIGEKHFAPLMERPEARALWWPRFQRIAGWFAAWESARREQ 871

Query: 850 --SVSGKINCPKK-------DIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYT 899
             +++ +I              I+S R D+I   ++    I +YKT        + +   
Sbjct: 872 IGAITAEIRGEIGIPLSPDRTFILSARADRIERRAEGTYAILDYKTGQPP--TAKQVRMG 929

Query: 900 HIAQLSIYEKILKD 913
              QL++   IL++
Sbjct: 930 LSPQLTLEAAILRE 943


>gi|295132149|ref|YP_003582825.1| hypothetical protein ZPR_0269 [Zunongwangia profunda SM-A87]
 gi|294980164|gb|ADF50629.1| conserved hypothetical protein [Zunongwangia profunda SM-A87]
          Length = 913

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 96/847 (11%), Positives = 226/847 (26%), Gaps = 109/847 (12%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
             +  +  +  K   +T             Y++   K  +  FE  +     L+   +  
Sbjct: 55  IEEFTEEVSGLKSIDNTTTLF----EFYEVYQKLTPKEELESFETFLAWAQSLIHDFNEI 110

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                  ++  N++   ++QD +    +    L E++    +      ++      K+++
Sbjct: 111 DRYLIDAEKFFNYLA--DIQDINHWSKQHRTELIENYLKFWDQLPQYYSVL-----KENL 163

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           +         + R          +       + L  +       L   ++V       Q 
Sbjct: 164 FEKEQGYQGLIYRSAASKVAVYASKNSNQEYVFLGFN------ALNSAEQVIFQELLQQN 217

Query: 287 LSE---DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
           L++   D              +   +  +      ++  +P+ E +    D        +
Sbjct: 218 LAKVFWDIDNVFLKDYHHEASLFIREYLKDWPFYKENPFHPEIEEYREAKDISITGIPKN 277

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
           I     A  ++ ++   +     K  ++   + L+L       P +      L       
Sbjct: 278 IGQ---AKYLAELLANKSEAELEKTAIVLGDESLLLPILNSLPPNVKD----LNITMGFP 330

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP-LFNFSEDDIFKICTQRHE 462
           +       L +      L  L     S     + + ++  P L    +    K   + ++
Sbjct: 331 LKNAPVTSLFNS-----LFDLHTKSGSSYYYKNVIAIINHPSLHQILKPYASKFIQKINK 385

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG-AKKGRQQFISRF 521
             TVY   ++      +  Q  I +  +    +   +   F  ++        Q+   + 
Sbjct: 386 ENTVYLKYEEIEANFPATLQEFISWCFKSWENSAKKAILHFQNIVFSIKDSLTQEKAGKL 445

Query: 522 GNEVIDVLDEFLNFTLRNEQN--SYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVH 578
             E +    +  N            +SL  L +   +   T            +++M + 
Sbjct: 446 QLEFLYHFHKLFNQLQTLNTTYPHINSLTALRNFYNEIMSTQSLDFQGRPFKGLQLMGML 505

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            ++ L+   V +                 I   L     +P +  +          L++ 
Sbjct: 506 ESRALDFENVIITSVNEGTLPSGKSNNSFIPYDLKKSYNLPTYREKDAVYTYHFYRLLQR 565

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             K T                  L   +    ++ +KS   T  ++     H  +     
Sbjct: 566 ATKVTL-----------------LYNTESGGLNSGEKSRFLTQLEIEKQPNHLLKINTVS 608

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
                +N +  +                 +T   +   + +    FSP          L+
Sbjct: 609 PKVPKVNNELKVIG---------------KTPAMIEKLKDLANYGFSPSALTSYIRNPLD 653

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ--------------VIFTLPEHKRKNF 804
                  G    E +         G +IH  L+               I    +   +  
Sbjct: 654 FYYQYVLGVKEEEEVEETVAYNTLGTVIHDSLEVFYKPLEGELLKEIHILDFRKRIDQEV 713

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRL-------LENPMMTTAMSCDSYSEVSVSGKINC 857
            T +     K    +    L+  I +        LEN  +          E  +   +  
Sbjct: 714 STQFYKSYTKSPILQGKNYLIFEIAKRYLSNFLDLENDRLKK--GEAIRIE-KIEKNLKS 770

Query: 858 PKK------DIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIP--------YTHIA- 902
                     + I G++D++        I +YKT      +IE +           +   
Sbjct: 771 KINISSLDFPVYIRGKVDRVENCNGITRIIDYKTGKVEQSKIEIVDWENITTDYDKYSKS 830

Query: 903 -QLSIYE 908
            Q+  Y 
Sbjct: 831 FQVLAYA 837


>gi|169342344|ref|ZP_02628918.2| putative helicase [Clostridium perfringens C str. JGS1495]
 gi|169299569|gb|EDS81632.1| putative helicase [Clostridium perfringens C str. JGS1495]
          Length = 706

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 28/171 (16%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              +I       +    +  S      +   +   KK+  + D   ++     L      
Sbjct: 430 RIREIVKEVMDSRAKLDSWISREDVLDIYDRFNGNKKEYTINDLAPILYLAIKL------ 483

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
                 K  ++  H++IDE QD S +Q++V+R LT             +    VGD  Q 
Sbjct: 484 ---EGKKATKDYRHVVIDEAQDYSPLQFKVVRELTG-----------TKYFTVVGDVNQR 529

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           +  +  ++   ++  ++I             I  L  S+RST +I+   +K
Sbjct: 530 LIKY--SDLAPMMELEKIFDDVNP------EIYNLNKSYRSTYEIMEYANK 572


>gi|298694206|gb|ADI97428.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ED133]
          Length = 1158

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 196/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I          +    F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         +      +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDLLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K    +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKELYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 1020


>gi|227505041|ref|ZP_03935090.1| helicase [Corynebacterium striatum ATCC 6940]
 gi|227198405|gb|EEI78453.1| helicase [Corynebacterium striatum ATCC 6940]
          Length = 747

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 80/272 (29%), Gaps = 46/272 (16%)

Query: 13  YELIYKDLWP--LPYFQVSDINKYVSLSMETGNPTILKKAQTLQQA---SQTQCIEERFS 67
            + +    WP   P   ++D+           +    +  + L +A   + T        
Sbjct: 417 VQQLIDQFWPTLDPRTVLADLLSSQEQIDAAASDYDSETREALYRAQGDAWTASDAALLD 476

Query: 68  LLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASL 127
            L+          +K    +   ++  D ++ L           D               
Sbjct: 477 ELAVLIGMPNPEEEKAAADKAWREQVADAEDALDILTSSDSTDNDDDMFDA--------- 527

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                      E    + V+D  + +    ++   R  +   +        HI++DE Q+
Sbjct: 528 -----------EILSAHDVID-AETLARRQEVSDNRTTAERAQEDYTWAYGHIIVDEAQE 575

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
            S ++W ++              S  R +  VGD  Q+     GA            +  
Sbjct: 576 LSPMEWRMLFR-----------RSPSRWMTLVGDTAQT-----GAPAGVDDWA----EAL 615

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
                ++F   +L +++R+   I  + + +  
Sbjct: 616 EPFVAKRFRHHQLTVNYRTPQPIADLANSLLE 647


>gi|296169026|ref|ZP_06850689.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896308|gb|EFG75966.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 402

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/305 (9%), Positives = 73/305 (23%), Gaps = 45/305 (14%)

Query: 4   RFGLSLNESYELIY-----KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQ 58
           R G+    +               +    V  ++ Y    +        +    L   + 
Sbjct: 60  RLGVQARGALTTALLRPRCAGRAAVREPLVRTVHGYAYAVLRRAAERAGEAPPRL--VTS 117

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
            +       LL+      +  P+         + +        + ++   +  +R    +
Sbjct: 118 AEQDAIIRELLAGDL---EDGPRAAAAWPAHLQPALATAGFATELRNMLARCAERGVDPQ 174

Query: 119 MFKST-----LASLTLAKYLNAHYEEAKKKNCV------------LDFEDLIINTNDLLK 161
             +             A      YE+                   L   +L+    +   
Sbjct: 175 ELERLGRRCRRPEWAAAGQFARQYEQVMLLRAAVGTAAPQATTPALGAAELVGAALEAFA 234

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
              +   +       +  +L+D+ Q        ++R L     +              GD
Sbjct: 235 ---IDPELLAAERGRVRVLLVDDAQQLDPQAARLVRVLAAGADLA----------LIAGD 281

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q+++ F G E   +        +           + L +S R    +   V  +    
Sbjct: 282 PNQAVFGFRGGESAGLSPASGWCPQD-----DDAPSVTLTVSHRCAPAVARAVSGIAHRL 336

Query: 282 ENAQG 286
               G
Sbjct: 337 PGGSG 341


>gi|158421481|ref|YP_001527708.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300]
 gi|158342724|gb|ABW35010.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300]
          Length = 520

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 77/255 (30%), Gaps = 41/255 (16%)

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
                +    F    A  T+       Y +       +D+ D++     L          
Sbjct: 170 AEHELSFPPGFDLVTALRTVQDRALQAYLD----KGHIDYTDMLYLPIKL---------- 215

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
                  +  +LIDE QD + +Q  +++ L                +  VGD +Q+IY F
Sbjct: 216 -GYGAGSLGTLLIDEAQDFTRLQHRLVKHLAGQ----------SGRVILVGDSEQAIYGF 264

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
            GA+   + R +   + R          + L ++FR     +T+  +     +   G +E
Sbjct: 265 SGADVLGLERAQATFRAR---------RLRLTVTFRCPRQHVTLARRYSEHIQAWDGAAE 315

Query: 290 DSTTTIRHRSSRIG-QVGTVQLWEQVVS------QHDSQCNPQQESWTSYFDSLPQESSA 342
                +   +     Q G + +            +        Q         L     A
Sbjct: 316 GEVLRVSEDALLSHTQPGDLVVCRTNGPIVQLALRLAEAGQAVQILGRELDKELGAHIDA 375

Query: 343 SILARRIAYTISNMI 357
           +  A   +  +  ++
Sbjct: 376 AFRAPFGSRDVERLL 390


>gi|182412469|ref|YP_001817535.1| ATP-dependent nuclease subunit B-like protein [Opitutus terrae
           PB90-1]
 gi|177839683|gb|ACB73935.1| ATP-dependent nuclease subunit B-like protein [Opitutus terrae
           PB90-1]
          Length = 989

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/308 (10%), Positives = 74/308 (24%), Gaps = 39/308 (12%)

Query: 642 STQEEYNRLLYVGMTRASDQ-LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
            +  E   L       A D  L+    +  + +       +                ++ 
Sbjct: 585 ESLRERLGLKTNATRFARDAYLLQAIAAWRTGDPGRLDLLFGKTTVAGEPLRPSRLLLRC 644

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPS 760
            +                   T   R     Q        +   + I+  +  P+    S
Sbjct: 645 PDEELPGRIRQLFRPAESTHTTESWRRAWRLQPRIVAPPTRIAVTAIRAWLACPFRFYLS 704

Query: 761 TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
            +       ++   S+   F+ G + H  L+ +   P  + +                + 
Sbjct: 705 RV--LRMEAVDPAKSELDVFDFGTLCHAALEAMGREPALRDEQDAPRLREFLLARLELEA 762

Query: 821 YKNL-----------LLSITRLL-ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRI 868
            +             L S  + L     +      + +    V          ++++G+I
Sbjct: 763 ARRFGRHLALPLVVQLESARQRLSRAAEVQALSRAEGWVIEHVERPFEITIGPLVVTGKI 822

Query: 869 DQISISQ--QNIFIFEYKTHHHVPQEIEHIPYTHIA----------------------QL 904
           D+I   +      + +YKT        +                              QL
Sbjct: 823 DRIDRHERTGARRVLDYKTSDRPVDPEQAHLRGWRREETAPALARFTYNAKEQVWTDLQL 882

Query: 905 SIYEKILK 912
            +Y   ++
Sbjct: 883 PLYRLAVQ 890


>gi|256962783|ref|ZP_05566954.1| prophage Lp1 protein 19 [Enterococcus faecalis HIP11704]
 gi|256953279|gb|EEU69911.1| prophage Lp1 protein 19 [Enterococcus faecalis HIP11704]
 gi|315578956|gb|EFU91147.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
          Length = 271

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 72/207 (34%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  SD +    G  +H   +    + E  ++   +   +        K
Sbjct: 38  EAAALAKLKGEWTPESDPKALLVGNYVHSYFES-PEIHEAFKEENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +          +       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIYQGEK------EVIVTGEIGGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDMHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|256854131|ref|ZP_05559496.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256958062|ref|ZP_05562233.1| phage protein [Enterococcus faecalis DS5]
 gi|256711074|gb|EEU26117.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256948558|gb|EEU65190.1| phage protein [Enterococcus faecalis DS5]
          Length = 271

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 72/207 (34%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  SD +    G  +H   +    + E  ++   +   +        K
Sbjct: 38  EAAALAKLKGEWTPESDPKALLVGNYVHSYFES-PEIHEAFKEENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +          +       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIYQGEK------EVIVTGEIGGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDMHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|303273010|ref|XP_003055866.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461950|gb|EEH59242.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 936

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 63/493 (12%), Positives = 137/493 (27%), Gaps = 72/493 (14%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +D + + I++DE QD S + W V++            +        VGD  Q IY F GA
Sbjct: 497 LDYDYDVIMLDEAQDASPVMWSVVK------------NQDACGKILVGDPNQEIYGFAGA 544

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +              A    +  +   L +SFR   +I +V   + ++  +A  +     
Sbjct: 545 KNAMDA-------AAAATPAEHLTRRTLSVSFRFGPEIASVACSLLALKGSADAVVGARR 597

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
             +   +   G+V      +    +  +      +++     +     + S         
Sbjct: 598 ADVDEEAG--GEVAADAAADAAAVRVATAPISLIKTFIPPLTTHAPSDAPSDA------- 648

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
                 +    S  + R  + + ++VL R       +              VV  +    
Sbjct: 649 -----PSAPAASLARPRKKKREQLVVLCRSNGSMFDVAGQVAE--------VVAEEDDNF 695

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK 472
            D             ++  +   S        +     ++  ++          +  +  
Sbjct: 696 HD-------------VIFPDWKPS----ANPKIAFVGGEEALRLDQLVDVWRLAFGDLDD 738

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
                    +   + + E         P           K  +        +    +   
Sbjct: 739 LHRVDDKYVRTFARRLVE-----DSGYPFHHPEWTRDVDKRLEGLARATAAQRDAEMSSK 793

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           +    R  +     ++ +                 +   V + T H +KGLE   V L D
Sbjct: 794 IAIVRRFGKRLPERVRAIRR---------ATVPDRDDAHVVLSTAHKSKGLEFDTVLLWD 844

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               V + +         S N        +P   ++           ++    +   L+Y
Sbjct: 845 DFVDVGAVRATTTTTTTTSTNVAAATRFTVPIHNAQGGNEFGFDFEEEEDVDPDEINLVY 904

Query: 653 VGMTRASDQLIIC 665
           V  TRA  +L + 
Sbjct: 905 VAATRAKKRLYLV 917


>gi|160883556|ref|ZP_02064559.1| hypothetical protein BACOVA_01528 [Bacteroides ovatus ATCC 8483]
 gi|156110969|gb|EDO12714.1| hypothetical protein BACOVA_01528 [Bacteroides ovatus ATCC 8483]
          Length = 687

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 38/174 (21%)

Query: 142 KKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           +KN +L++ DL  +   +  L   +  +++         H+LIDE+QD S IQ++VI+ L
Sbjct: 437 RKNRILEYADLAPLAYLHIALNGNNAQSYV--------KHLLIDEMQDYSPIQYKVIQKL 488

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSI--YSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        P     +GD  QS+  Y    A+       ++              I
Sbjct: 489 Y------------PCRKTILGDTSQSVNPYGSSTAD-----MIQKAFAT--------GEI 523

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGL-SEDSTTTIRHRSSRIGQVGTVQL 310
           ++L  S+RST +I +   K+ S  E    +   +    +  +++     G   L
Sbjct: 524 MKLCKSYRSTFEITSFAQKIQSNNELEPIMRHGEHPKILPFQNTEEEIQGIADL 577


>gi|83954763|ref|ZP_00963474.1| hypothetical protein NAS141_16118 [Sulfitobacter sp. NAS-14.1]
 gi|83841047|gb|EAP80218.1| hypothetical protein NAS141_16118 [Sulfitobacter sp. NAS-14.1]
          Length = 848

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/563 (9%), Positives = 140/563 (24%), Gaps = 63/563 (11%)

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
            I A+DI VL          T        +  + + G    +    +  +    L     
Sbjct: 222 GIPARDIAVL------AAGDTRQIARAFAEQGVPISGLPGNLPERDIVGETANQLALAKR 275

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
           +    +    +  SPL  +       +       +   + +   A      +  +     
Sbjct: 276 TPTPTIVLASLALSPLMPWPAQTGRDLAESIMNGDFRGD-VLSPAQAHKDLWTDMRASAG 334

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
            L  +            I        +  +R      +                    + 
Sbjct: 335 SLAQLRF------LIDRICERIAQGNEVRARLSIPPGE---------------GSPDWEA 373

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           ++  ++   P+       N   V + + H     +   + + D     +  +       +
Sbjct: 374 ILRGIQIASPSSP-DPERNLEGVSLWSAHETPWRQCRHLIITDFTDGRYPTRPRANPLFL 432

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
            S                     + L    +     E   L    +   ++ +       
Sbjct: 433 DSEITAIRT-------------TTGLQLRGRAEGLAESLFLFDQQLQAVAESVTFLVPWR 479

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKI--KLTNSINKDEWIAYEWSTHHPENTPLERE 727
             +  +        +V  +  + E    +   L+     D  +A+      PE+  L   
Sbjct: 480 DLSGVRQQPSAGLSLVARAISDVEEAHDLILDLSRLPPGDCPVAHHRLPPLPESDELPEA 539

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI----DTKGKTNLESLLSDNQTFNRG 783
            +  +L       K   +      +    L  S +    D  G  ++     +     +G
Sbjct: 540 LSFPRLDLLALRRKDDGTSKPQSPSRLETLLVSPLAWLLDEVGAGDMSWSAEELDVMAKG 599

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT--AM 841
            I H + + +F   +   +    +     A       +   L S +  +E   +      
Sbjct: 600 NIAHDVFEHVFLKDQPLPEPAALTAAVAEAYDLALTRHAGFLRSASWEMERSGLEREILQ 659

Query: 842 SCDSYSE---------VSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEY-KTHHHVP 890
           +   + E         +     +      I + G+ D I       + + ++ K+     
Sbjct: 660 AALRWREHLLALGAKIIGNEIWLAGEAHGINLHGKADAILELPDGTLLVVDHKKSGTSAR 719

Query: 891 QEIEHIPYTHIAQLSIYEKILKD 913
           +           Q  +Y  +L  
Sbjct: 720 RRRME--AGWDLQAGLYRDMLAR 740


>gi|315033091|gb|EFT45023.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
          Length = 271

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 77/207 (37%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  SD +    G  +H   +    + E  ++   +   +        K
Sbjct: 38  EAAALAKLKGEWTPESDPKALLVGNYVHSYFES-PEIHEAFKEENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +              EV V+G+I       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKKEEAFLNIY--QGKKEVIVTGEI----GGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDIHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|289523885|ref|ZP_06440739.1| hypothetical protein HMPREF1705_01833 [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502541|gb|EFD23705.1| hypothetical protein HMPREF1705_01833 [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 959

 Score = 61.9 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 79/588 (13%), Positives = 164/588 (27%), Gaps = 80/588 (13%)

Query: 371 IQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILS 430
           +  KDI + +     + +   +       Y+I         L + +    +  L      
Sbjct: 301 LTFKDIAIEIPSPYKS-IAEDVLNA----YRIPWKSGSGKYLNETMCWDLVKRLKIAKDE 355

Query: 431 QEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
               L+ + +L +PLF F     F    +        E+    +  G ++   +IK    
Sbjct: 356 NWPFLATIGLLSNPLFGFDLPKEFLEFLKERIPSGAKEWTDILSKSGATESTRIIKKWDS 415

Query: 491 LIHIAQFCS-PHDFFTLILGAKKGRQQFISRFGNEVIDV-LDE-------FLNFTLRNEQ 541
             +  +  S     F  +L       +   R G  V D  LDE       FL    +   
Sbjct: 416 FFNHIKRGSNVESLFQRLLKLLDDELEIRKRAGACVTDPSLDESLYEVSKFLEALEKKAL 475

Query: 542 NSYSSLQELI-------------SELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPV 587
           +   SL EL                L ++    +          V I    +       +
Sbjct: 476 SLAESLPELGPAQKDMLSEAEGWEYLNRFAEETRILPPKRKRESVTIYFDSSPVLATHKL 535

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
             +++  SQ +  K      I      +      I ++ +   I   L    ++  +  +
Sbjct: 536 YVVINATSQQWPGK------ITDPPLLNDEARRIIHENANLAGIHLPLRHERRQQKEALF 589

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            R LY     ++++  +   +  +  + +    + +M  +       V++ +   S    
Sbjct: 590 RRHLYA----STEETWLTFSAIDAQGRPNKLSPFLEMDGEKEDLYIIVEETRRPLSKLLP 645

Query: 708 EWIAYEWSTHHPENTPLEREETI------KQLMDEQKIPKKLFSPIKNDINEPYILNPST 761
           E   +      P++               K       I   +  P          L    
Sbjct: 646 EGERFLREAEVPKDKLSRPRRKPIPSVKPKDEGYLSDIDTWVQCPALYAYRSILKL---- 701

Query: 762 IDTKGKTNLESLLSDNQTFNRGLIIHKLLQV------------IFTLPEHKRKNFITS-- 807
                    +   +       G ++H L               +    E   +  + S  
Sbjct: 702 --------FQPKEAGLDAQKCGNMLHLLWSKAWKMRSSEKGLSLEACVEQLWEEVVESTY 753

Query: 808 -YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISG 866
                  KL   +E   L +     ++  +     +  + +E            D+   G
Sbjct: 754 PLLNHIRKLHRHRERLRLQVLRLARIQEEIYLKLRTAFASTEWERQLP-PFTINDVSFRG 812

Query: 867 RIDQISISQQ-NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           R D+I   ++    +++YKT      E          QL+ Y   L  
Sbjct: 813 RADRIDHLKEIGQILWDYKTAGSKNYENS-------LQLASYALALSK 853


>gi|162312261|ref|NP_596121.3| DNA helicase I [Schizosaccharomyces pombe 972h-]
 gi|74638875|sp|Q9USU3|FBH1_SCHPO RecName: Full=F-box DNA helicase protein 1
 gi|14269452|gb|AAK58077.1|AF380117_1 DNA helicase Fdhp [Schizosaccharomyces pombe]
 gi|14715439|emb|CAC44128.1| DNA helicase I [Schizosaccharomyces pombe]
          Length = 878

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 22/105 (20%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            + ++IL DE QD +    ++I                   +  VGD  Q IY F GA  
Sbjct: 477 SKYDYILFDEAQDFTPCMVDLIY------------RQKHARIVIVGDAHQCIYGFRGANA 524

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
                          N       + L  SFR    +    + + S
Sbjct: 525 CAFNE----------NLYPSTKQLCLTKSFRFGNSVAKYANFLLS 559


>gi|7492645|pir||T40239 probable helicase - fission yeast (Schizosaccharomyces pombe)
          Length = 829

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 22/105 (20%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            + ++IL DE QD +    ++I                   +  VGD  Q IY F GA  
Sbjct: 428 SKYDYILFDEAQDFTPCMVDLIY------------RQKHARIVIVGDAHQCIYGFRGANA 475

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
                          N       + L  SFR    +    + + S
Sbjct: 476 CAFNE----------NLYPSTKQLCLTKSFRFGNSVAKYANFLLS 510


>gi|229549051|ref|ZP_04437776.1| conserved hypothetical protein [Enterococcus faecalis ATCC 29200]
 gi|257078085|ref|ZP_05572446.1| phage protein [Enterococcus faecalis JH1]
 gi|307271287|ref|ZP_07552566.1| hypothetical protein HMPREF9514_00041 [Enterococcus faecalis
           TX0855]
 gi|229305844|gb|EEN71840.1| conserved hypothetical protein [Enterococcus faecalis ATCC 29200]
 gi|256986115|gb|EEU73417.1| phage protein [Enterococcus faecalis JH1]
 gi|306512036|gb|EFM81027.1| hypothetical protein HMPREF9514_00041 [Enterococcus faecalis
           TX0855]
 gi|315148876|gb|EFT92892.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
          Length = 271

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 77/194 (39%), Gaps = 25/194 (12%)

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
             SD +    G  +H   +    + E  ++   +   +        K+++     I RL 
Sbjct: 51  PESDPKALLVGNYVHSYFES-PKIHEAFKEENKSKMFSSRKPFGLLKDFQIAEQMIERLK 109

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT--HHHVP 890
           +          +   EV V+G+I       +  G+ID +++ ++  +  + KT    H  
Sbjct: 110 QEEAFLNIYQGE--KEVIVTGEI----GGAMWKGKIDCLNLEEK--YFVDIKTTKDMHEK 161

Query: 891 QEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-----SEPKVFIIPQ 937
           +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V     SE K+  + +
Sbjct: 162 KWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSKQTPSEAKLITLSE 220

Query: 938 NKLNKAFAEISTKI 951
            K+     E+   I
Sbjct: 221 EKMIYELEELKENI 234


>gi|290956157|ref|YP_003487339.1| DNA helicase II [Streptomyces scabiei 87.22]
 gi|260645683|emb|CBG68774.1| putative DNA helicase II [Streptomyces scabiei 87.22]
          Length = 711

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 68/260 (26%), Gaps = 41/260 (15%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKA----QTLQQASQTQCIEERFSLLSSFF 73
                L       ++   +L       T+   A      L   S +   +     L    
Sbjct: 306 ALAAALRENLSLLLDGDEALLARVDVTTVDSYAHGVVTRLDGRSPSPVGDREERQLWERV 365

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
           + +   P       +   +   L + L+        +R    +                 
Sbjct: 366 VKKLGLPWTEQFLAQ-EYRHVVLAQDLRTLDAYKAVVRRGRGSALSAARREQLWPAV--- 421

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +EE  +          +      LK    +A +        +H+++DE QD    QW
Sbjct: 422 -ELFEEMLR----------VRKATTYLKVCARAADLLAGSAPTHDHVVVDEAQDLHPAQW 470

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            V+R             S    LF  GD  Q IY    +                     
Sbjct: 471 RVLR---------GAVASGSDDLFITGDPHQRIYDSKVSLGSL-------------GVSV 508

Query: 254 KFSIIELPLSFRSTADILTV 273
                 L +++RST +IL  
Sbjct: 509 TGRTHRLRINYRSTEEILAW 528


>gi|15791353|ref|NP_281177.1| hypothetical protein VNG2620G [Halobacterium sp. NRC-1]
 gi|169237113|ref|YP_001690313.1| DNA helicase II [Halobacterium salinarum R1]
 gi|10582002|gb|AAG20657.1| repair helicase [Halobacterium sp. NRC-1]
 gi|167728179|emb|CAP14967.1| DNA helicase II [Halobacterium salinarum R1]
          Length = 609

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 58/161 (36%), Gaps = 34/161 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +   K +N ++ F D++                +  +   + +++IDE QD + +Q+
Sbjct: 191 IRAWRTYKGENELVGFADMLERV------------EQRSLLPNVEYLVIDEFQDITSLQY 238

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           +V           +        +   GD+ Q +Y++ GA+P+ +L               
Sbjct: 239 DVY----------EEWRPHMDRVLIAGDDDQVVYAWQGADPRLLLD------------TT 276

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                 LP S+R  + +L +V +  S  +  Q         
Sbjct: 277 VTDDQVLPNSYRLPSQVLEIVQQEISHIDTRQEKDLKPRKE 317



 Score = 42.2 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 65/223 (29%), Gaps = 26/223 (11%)

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
                 +          +     ++              + +  L   A   +       
Sbjct: 369 GIPFRALTDQRMWTDRLQQYINAVEALETDDDVNGLEARRLMDMLQDSAFGTNDRSDLRE 428

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN--EQNSYSSLQELISELEQYPPTIKRA 564
            +   +G    ++           EF+   +      ++ + +   ++  ++        
Sbjct: 429 AIDEAQGESTDLTELTFPA-----EFIRDYVPFVPGPSAAADMLRKVTRYQRRSIDAYFE 483

Query: 565 HSA---NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                 + + VR+ T+H+AKG E+  VFL    ++    +           +D       
Sbjct: 484 GDYRGMDPDRVRVGTIHSAKGREADHVFLATDLTEKVVEQMAATADPETVPDDVEFTSKT 543

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
            P     +N                  R+ YVGM+RA ++L++
Sbjct: 544 SPVPILTDN----------------ERRVFYVGMSRARERLVL 570


>gi|224417727|ref|ZP_03655733.1| hypothetical protein HcanM9_00476 [Helicobacter canadensis MIT
           98-5491]
 gi|253827072|ref|ZP_04869957.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141269|ref|ZP_07803462.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510478|gb|EES89137.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130300|gb|EFR47917.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 743

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 780 FNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
           FN G  IHK LQ        H+    +     +N +++  K     L    R L+     
Sbjct: 540 FNVGTQIHKALQKAYVNFAIHRDFEKLQQEAYENLQVYENKREYFELEIAKRYLQKFFYA 599

Query: 839 TA-MSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYK--------THHHV 889
                 D +  +    + +    +I   GRID+I    +++ + +YK        T   +
Sbjct: 600 ERKHLEDGWIPIEFEKEFSLQVCEIPFRGRIDRIDKKGESVLVLDYKYKKNLKVSTQRSI 659

Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI 925
               +        QL +Y   L++SY    +     
Sbjct: 660 DTSKD-------FQLVLYALALQESYS--EVEAGFY 686


>gi|167762882|ref|ZP_02435009.1| hypothetical protein BACSTE_01246 [Bacteroides stercoris ATCC
           43183]
 gi|167699222|gb|EDS15801.1| hypothetical protein BACSTE_01246 [Bacteroides stercoris ATCC
           43183]
          Length = 963

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 105/837 (12%), Positives = 230/837 (27%), Gaps = 134/837 (16%)

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           DF+D          K  V A   +   Q++ +I+ D+       Q E I+   ++F + K
Sbjct: 105 DFDD--------ADKNLVDADKLFSNLQDLKNIM-DDYDFLDQEQEEAIQQFFQNFSIDK 155

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF-RS 266
            T    + +        S++   G   +   +              +  I EL     R 
Sbjct: 156 RTQLKEKFI--------SLWDKLGDIYRHYRKNLSELGIAYEGMMYRHVIEELDTDRLRY 207

Query: 267 TA------DILTVVDKVFSIPENAQGLSEDSTT--------TIRHRSSRIGQVGTVQLWE 312
                   ++L  V+  F       G +                 +   + + G   L  
Sbjct: 208 DRYVFVGFNVLNKVETHFFQRLQDAGKAMFYWDYDVFYTRLPHEQQPPYVHEAGEFILRN 267

Query: 313 QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ 372
             +  +                      + +  AR +   +  ++ +DT  S  K+  I 
Sbjct: 268 LKLFPNQLPETAFDVLRHPKKIRFISAPTENAQARYLPQWVRTVVKSDTEASKEKENAIV 327

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALG------- 425
             +  +L+      P                V     F L        + AL        
Sbjct: 328 LCNEALLLPVLHSIPPEVEN-----------VNITMGFPLAQTPVYSYINALMELQTTGY 376

Query: 426 RFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY--------EYIQKFANCG 477
           R    +    + + +LK P           +  Q  +    Y        +   +     
Sbjct: 377 RRDTGRYTYEAALAVLKHPYTRQLSATAEDLEKQLTKDNRFYPLPSELKKDAFLEQVFTP 436

Query: 478 ISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL 537
            +    + +Y+ EL+         +     +  +  R+     +       ++  L+   
Sbjct: 437 QNGTAAICRYLTELLREVAVIYRQEKDEEDIFNQLYRESLFKGYTL-----INRLLSLIE 491

Query: 538 -RNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
                    +L+ L++ L                 +++M V   + L+   + ++     
Sbjct: 492 NDGLSLHTDTLKRLMNRLLTATNIPFH--GEPAIGMQVMGVLETRNLDFRNLIMLSLNEG 549

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                      I  +L    G+     ++              +   + E   LLY    
Sbjct: 550 QLPKAGGDSSFIPYNLRKAFGMTTIEHKNSV------YAYYFYRLIQRAENITLLY---- 599

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
                       NT+++  +       M+     +   + +  L    +  + +  E   
Sbjct: 600 ------------NTASDGLNRGEMSRFMLQFLVESPHDISRQYLEAGQSPQQSLKIEIHK 647

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                   E  + +    D ++ P  LFSP   +      L        G    + + ++
Sbjct: 648 TD------EVLQRMYNAYDIRRHPNALFSPSALNTYLDCRLRFYYRYVAGLKAPDEVSAE 701

Query: 777 NQTFNRGLIIHK----LLQVIFTLPEHKRKNFITSYC---------------TKNAKLWP 817
             +   G I H+    + Q +    +  R+  +                    +   +  
Sbjct: 702 IDSALFGTIFHRSAELVYQDLTANGKEIRREDLEQLLRNDVRLQAYVDTAFKEEFFHVPA 761

Query: 818 AKEYK---------NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDII----I 864
            ++ +          ++ S  R L    +  A       E  V+  +       +    I
Sbjct: 762 GEQPEYNGTQLIHSKVIASYLRQLLRNDLQYAPFRMEGMEQKVTETLEIETPSGMLPLNI 821

Query: 865 SGRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEKILKD 913
            G ID++      + I +YKT      P+ IE +         +I Q  +Y  I+  
Sbjct: 822 GGTIDRMDSKGDTLRIVDYKTGGTPKTPESIEQLFTPADNRPNYIFQTFLYAAIMCR 878


>gi|314933178|ref|ZP_07840543.1| ATP-dependent nuclease subunit B [Staphylococcus caprae C87]
 gi|313653328|gb|EFS17085.1| ATP-dependent nuclease subunit B [Staphylococcus caprae C87]
          Length = 1155

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 82/680 (12%), Positives = 184/680 (27%), Gaps = 123/680 (18%)

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKN 398
                + +  I   ++ +     I  + +   ++ +DI +L R      L   +     +
Sbjct: 298 NHVEILESSNIREEVNEL--ARRIIRDVRDNQLRFQDIAILYRDESYAYLFDSIF----S 351

Query: 399 DYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL----FNFSEDDIF 454
            Y I    + +  ++ H  ++ + +L   I S  +  S + + K+ +    F  S   I 
Sbjct: 352 LYDIPFNIDTKKSMSHHPIMEMIRSLIEVIQSNWNINSMLRLFKTDVLTAQFKHSSYLID 411

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL--IHIAQFCSPHDFFTLILGAKK 512
            +     E     +         + +F  + +  H L       +         ++    
Sbjct: 412 LLENFALERGVYDKRWLDEEVFHVDQFNKMGRKSHALTPQEKETYEEVIRLKNNVIDKVL 471

Query: 513 GRQQFISRFGNEVIDVLDEFLNFTLRNE-------QNSYSSLQELISELEQYPPTIKRAH 565
             ++      + V D    F       E       +     +     + E+         
Sbjct: 472 YFEK-AMSEAHTVRDFATAFYESMEYFELPNQLMTERDELDVAGKHQQAEEIDQIWNGLI 530

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH----------------KHIKKMHIM 609
               + V +         +   VF +      F                  K   K H+ 
Sbjct: 531 QILDDLVTVFDTQEMTLKQFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVY 590

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE--------EYNRLLYVGMTRASDQ 661
               +D  +P  +  S    +      +   +            +   + Y+ MTRA ++
Sbjct: 591 MVGMNDGSLPQPVSSSSLITDEEKKYFEQNAQIELSPTSDILQMDEAFVCYIAMTRACEK 650

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY--------- 712
           +        ++ ++     +   + D +HN + V   +                      
Sbjct: 651 VTFSYSLMGNSGEEKEISPFLSQIKDLYHNLDIVNIQRQHEEQPIGLMQHVHQTKIELFD 710

Query: 713 -EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-------------- 757
                   E+  +   +  + + D++++ + L   I +   +   +              
Sbjct: 711 TLRRWLDHEDVDIRWLDAYQVIRDDERLNEGLDYLITSLTYDNETVQLNETLTKQLYGKT 770

Query: 758 ---NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN 803
              + S  +   +              E    + Q F+ G I H +L+ I    E   KN
Sbjct: 771 INASVSRFEGYQQCPFKHYASHGLRLNERSKYELQNFDLGDIFHSVLKHISDRVEGDFKN 830

Query: 804 F----ITSYCTKNAKLWPAKEYKNLLLS--------------ITRLLENPMMTTAMSCDS 845
                I +   +  +L   K   NLL S              +   L      T  S   
Sbjct: 831 LDRKKIRALTEEALELILPKVQFNLLNSTAYYKYLSRRIGSIVETTLNALKYQTGFSKFV 890

Query: 846 YSEVSVSGKINCPKKDII----------------ISGRIDQIS---ISQQNIF-IFEYKT 885
                         K+                  I G+ID+I        +   I +YK+
Sbjct: 891 --PQRFETGFRKSPKNRDELVAKPLHTRQGIPINIRGQIDRIDTYTKDDHSYVNIIDYKS 948

Query: 886 HHHVPQEIEHIPYTHIAQLS 905
                  ++     +  Q+ 
Sbjct: 949 S-TGSATLDLTKVYYGLQMQ 967


>gi|83816080|ref|YP_445924.1| hypothetical protein SRU_1807 [Salinibacter ruber DSM 13855]
 gi|83757474|gb|ABC45587.1| hypothetical protein SRU_1807 [Salinibacter ruber DSM 13855]
          Length = 1073

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 48/471 (10%), Positives = 114/471 (24%), Gaps = 69/471 (14%)

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  +   +  E +       L   LE       RA         ++ + +A     
Sbjct: 527 WQRLDRLVRVPVDYEASGPQLAALLRRWLE---GQYVRAEHPRPGTAHVVPLESAGYGAR 583

Query: 586 PVVFLVDTGSQVFS-----HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
             +++V   S   S        ++        +   G       +        +      
Sbjct: 584 SHLYVVGMDSDTLSTAAVEGAMLRDPDRRALSDSMDGELPERRSASDEAQWHHEQALARH 643

Query: 641 KSTQEEYNRLLYVGMT----RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                 Y R+  +        +   L + +     +E+        +    +        
Sbjct: 644 TGVLSLYTRIFDLDSGEERYPSPLFLRLAEAPTVESERTEGIVPTGERTRLNDMEAWLTA 703

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY- 755
                             S  +P     E     +Q          L +    +++    
Sbjct: 704 FRNRGGEGRGTGTARDALSDCYPWLRRGEDARQARQSDAYTAHDGLLEAGTYPELDFLRD 763

Query: 756 -----ILNPSTIDTKGKTNLE---------SLLSDNQ--------TFNRGLIIHKLLQVI 793
                 ++   ++T  +T              L +             RG I+H   +  
Sbjct: 764 RENGGPMSAGRLETFAETPYLYFLKYVLGVEPLDEPALDDEPWLNALRRGSILHATFEAF 823

Query: 794 -------FTLPEHKRKNFITSYCTKNAKLWPAKEY---KNLLLSITRLLENPMMTTAMSC 843
                     P  + +  +        K    +       +  +  R L    +    + 
Sbjct: 824 MTTLREGDERPAAEHEPLLEDTLQAAFKAETEQVAPPSDVVEEAAFRRLRADALVFLRAE 883

Query: 844 DSYS--------EVSV-------------SGKINCPKKDIIISGRIDQISISQQNIFIF- 881
            ++         EV               +  I    +++ + GRID++           
Sbjct: 884 TAHCRTHAPLYHEVGFGYGPYRRQEEDFGAVTIPVEGREMSLRGRIDRVDRRPDGTLAVW 943

Query: 882 EYKTHHHVP-QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
           +YKT      +E + +      Q ++Y   L     ++++     Y    +
Sbjct: 944 DYKTGRASSFEEGDPVADGAQLQWALYAYALSTL-TDETVGTSGYYFPTTR 993


>gi|86134921|ref|ZP_01053503.1| conserved hypothetical protein [Polaribacter sp. MED152]
 gi|85821784|gb|EAQ42931.1| conserved hypothetical protein [Polaribacter sp. MED152]
          Length = 912

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/452 (12%), Positives = 116/452 (25%), Gaps = 77/452 (17%)

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF-----TLRNEQNSYSSLQEL 550
            F S  DF   IL      +  ++    E    L  F        TL+ E   ++ L+ L
Sbjct: 420 PFISVTDFINQILALIDVLKVEVNTLEKE---YLFRFYTAFTQLKTLQTEFEYFTDLKTL 476

Query: 551 ISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
                +                +++M +   + L+   V L      V      +   I 
Sbjct: 477 SQFFKQLIDSESLSFQGEPLKGLQLMGMLETRVLDFENVILTSANEGVLPASSQQNSFIP 536

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             +  + G+P +  + K             +                     L   +H  
Sbjct: 537 FDVKIEFGLPTY--REKDAIFSYHFFRLMQRAKNIY---------------ILYNTEHDV 579

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
             + +KS   T  +M+     +     K+                      N  LER + 
Sbjct: 580 FGSGEKSRFVTQLEMLRTDIVHKIVSPKVV---------AQHTALKQVAKNNDVLERLKE 630

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
           I +           FSP          +             + +         G I+H+ 
Sbjct: 631 IAKSG---------FSPSSLTNYLYNPIAFYKQKILKIKEFDDVEETVAYNTLGTIVHET 681

Query: 790 L-------------QVIFTLPEHKRKNFITSYCTKNAKLWPAKE------YKNLLLSITR 830
           L             +      +   K+ I  Y     K            ++     +  
Sbjct: 682 LDELYKPFVGKFLQEENVEEMQKIAKDLIIKYFKIEFKNGDISTGKNRLIFEVANRFVAN 741

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKK------DIIISGRIDQISISQQNIFIFEYK 884
            L           +    V+    ++           I + G +D++      + I +YK
Sbjct: 742 FLTKERALLKDENNQLKIVATEENLSAEITVDGLDFPIKLHGNVDRVDELNGELRIIDYK 801

Query: 885 THHHVPQEIEHI-------PYTHIA-QLSIYE 908
           +      E++ +          + A Q+ +Y 
Sbjct: 802 SGMVKSPELKVLDFNALREKEQYKAIQVLLYA 833


>gi|257425015|ref|ZP_05601442.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257272585|gb|EEV04708.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            55/2053]
          Length = 1043

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 198/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQINPMLRLLKTDVLTTSYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I          +    F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLSQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 1020


>gi|169237546|ref|YP_001690750.1| nuclease subunit B-like protein [Halobacterium salinarum R1]
 gi|167728773|emb|CAP15641.1| nuclease subunit B homolog [Halobacterium salinarum R1]
          Length = 1018

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 66/656 (10%), Positives = 168/656 (25%), Gaps = 101/656 (15%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
               R +A  +   +       +                    T   +       + + I
Sbjct: 256 EREIRFVARELRTELANGRDPDDLAVVAP-------------GTEAYSGYVEDTFDTFDI 302

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ--- 459
             V      L    A   +  L               +L +PL +  + D     T    
Sbjct: 303 PHVTTAASQLNQTFAGSVVHDLLNLAEPDPRAEDLTSLLANPLVDIVDTDQANAVTAAAR 362

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS 519
           R +T +V   +    +   S  + ++  +  L          +    ++  +   +    
Sbjct: 363 RRDTVSVSPLLDDVDDEVASLVEELLATLEPLRTD-DIEDATETLRRLMDDRFDLEAATE 421

Query: 520 RFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP--------TIKRAHSANHNE 571
            + +     +++     +    +S+ SL  + S+L              I+    A    
Sbjct: 422 DYASGAEQAVEQRAYDLVDEVLSSFESLAAVNSDLSPLALFTRAFDGVAIRVPQRAAGGH 481

Query: 572 VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNI 631
           V +M +  A+      VFLV   S+ F     +        + DP       + + R   
Sbjct: 482 VEVMGLLDARMRSFEKVFLVGLTSEHFPVTPERPAFFEEMTDADPRFDTGDERLRGRYLF 541

Query: 632 VSDLIKHLKKSTQEEYNRLLYVGMTRAS-----DQLIICKHSNTSNEKKSNQRTWYDMVY 686
            + L    + +            + R+       ++   +  +  +++  ++      V 
Sbjct: 542 ATLLANVDELTITTPETGDDESAVVRSPVLDELQRVTGIEPEDGVDDRVGSREDLQRRVA 601

Query: 687 DSFHNDERVKKIKLTNSINKDEWIAYEW----STHHPENTPLEREETIKQLMDEQKIPKK 742
            +      V        ++ ++    +     + +       E +  ++    ++  P  
Sbjct: 602 ATADRRAAVSHAGDRGDLSPEQTKRTDRGLHCADNRGTAGLSEHDGVLEPETVDEVYPPS 661

Query: 743 LFSPIKNDINEPYI---LNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
              P      E Y+         +  G  + + +         G  +H +L+  F   + 
Sbjct: 662 EREPYSASRIERYVECGFKFYADEVLGIEDPDDIEVVPTPLETGSYVHDVLERFFADLQD 721

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITR----------------------------- 830
           + ++ +      +         +  +  +                               
Sbjct: 722 ETEDGVD-LTEFDRHDLATHLREIAVEELQDTDFEYDGLFYERWKAELFAGLGDGESVPY 780

Query: 831 -----------------LLENPMMTTAMSCDSYSEVSVSGKINCPKKD-----------I 862
                             L+N +   +       E      +                 +
Sbjct: 781 EAGSKPHDAPEQGLFATFLDNELSRDSAGRPHLFEAPFGEGLPDSDAGPFTVERPDGSTV 840

Query: 863 IISGRIDQISISQQN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            I G ID++ +S+      + +++YKT                 QL IY     + 
Sbjct: 841 SIRGYIDRVDVSRDGEQPTLTLYDYKTGRAPYMT--KTTGGTKFQLPIYLLAAAEV 894


>gi|320197271|gb|EFW71887.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli WV_060327]
          Length = 540

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 24/132 (18%)

Query: 146 VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205
           +LDF  L      +++        +  +  +     +DE QDT     +V + +      
Sbjct: 151 ILDF--LPHLAFYIVRTS---YSCQRYLMAKYIGFFVDEYQDTGYFTHQVFKFI------ 199

Query: 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFR 265
                +    L  VGD  QSIY +       +                 F   E+ ++ R
Sbjct: 200 ----PTLGMPLIIVGDLDQSIYLYSHRSSDSLKDFMND---------SGFCHKEITVNHR 246

Query: 266 STADILTVVDKV 277
               I+   +++
Sbjct: 247 CHPSIVNYANRI 258


>gi|298251770|ref|ZP_06975573.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
 gi|297546362|gb|EFH80230.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963]
          Length = 705

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 25/109 (22%)

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY-- 227
           + ++ Q  + +++DE QD       ++  L++          +   +F   D  QSIY  
Sbjct: 440 QSRLHQRFDAVVVDEAQDLDPCALRLLVKLSK----------AANRIFITADANQSIYGS 489

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            F  ++  + LR +                  L  ++RST +I    + 
Sbjct: 490 GFTWSDVHQDLRFQ-------------GRTSILHANYRSTQEIGEAANA 525


>gi|219855583|ref|YP_002472705.1| hypothetical protein CKR_2240 [Clostridium kluyveri NBRC 12016]
 gi|219569307|dbj|BAH07291.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 763

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 28/194 (14%)

Query: 152 LIINTNDLLKKRDVSAWIRYKID-------QEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
           L      +L   D    +  K          EI +++IDE QD + +Q+E+   L +   
Sbjct: 505 LEKLKTRILNYEDQPPLLYLKGAIGDLPKTSEIKYVIIDEAQDYTPLQYEIFHQLFQ--- 561

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                     ++  +GD  QSI  F             I  K          II L  S+
Sbjct: 562 --------SASITILGDLHQSINPFM--NVGDYSNISNIFSKD------DTCIINLTKSY 605

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST +I     ++    +   G   + +         I +    +   + V  ++ +   
Sbjct: 606 RSTIEITKFSRRLL--NKEISGECVERSGDDPLLLGFIDEGAIKERLLEDVKIYNEKGYK 663

Query: 325 QQESWTSYFDSLPQ 338
                T       +
Sbjct: 664 SIGIITRTVKEAEE 677


>gi|153955147|ref|YP_001395912.1| helicase [Clostridium kluyveri DSM 555]
 gi|146348005|gb|EDK34541.1| Predicted helicase [Clostridium kluyveri DSM 555]
          Length = 747

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 61/194 (31%), Gaps = 28/194 (14%)

Query: 152 LIINTNDLLKKRDVSAWIRYKID-------QEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
           L      +L   D    +  K          EI +++IDE QD + +Q+E+   L +   
Sbjct: 489 LEKLKTRILNYEDQPPLLYLKGAIGDLPKTSEIKYVIIDEAQDYTPLQYEIFHQLFQ--- 545

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                     ++  +GD  QSI  F             I  K          II L  S+
Sbjct: 546 --------SASITILGDLHQSINPFM--NVGDYSNISNIFSKD------DTCIINLTKSY 589

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RST +I     ++    +   G   + +         I +    +   + V  ++ +   
Sbjct: 590 RSTIEITKFSRRLL--NKEISGECVERSGDDPLLLGFIDEGAIKERLLEDVKIYNEKGYK 647

Query: 325 QQESWTSYFDSLPQ 338
                T       +
Sbjct: 648 SIGIITRTVKEAEE 661


>gi|111116475|ref|YP_709359.1| putative DNA helicase [Pseudomonas putida]
 gi|111036279|dbj|BAF02469.1| putative DNA helicase [Pseudomonas putida]
          Length = 693

 Score = 61.9 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 102/371 (27%), Gaps = 51/371 (13%)

Query: 151 DLIINTNDLLKKRDVSAWIRYK--IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           D+     ++     +  W   K  +    +  L DE QD + +   +   L +    G  
Sbjct: 353 DIQNEAANITHDGYLKLWALSKPNLRDRYDIALGDEAQDINPV---IAGVLAQQAAYGMG 409

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                  +   GD  Q +Y F GA                     K  +  L  SFR  +
Sbjct: 410 -------VVVCGDGHQMLYRFRGAVDALNAT-----------WLDKAEVHYLTQSFRFGS 451

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD----SQCNP 324
            +  V + V +    ++ L+     T   ++          L   VV   +    +    
Sbjct: 452 AVAHVANMVLAFKGESRQLAGLGGETRVSKALPADLEHRTVLCRTVVGVIETALANVETG 511

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
            +  W    +    +    + A          +          K+++Q      L ++  
Sbjct: 512 AKIYWVGGIEGYNLQDLEDLHA----------LSKGWRDRVKGKKLLQEYPDYDLYKQIA 561

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
           D      + R +K    I     D   L   L    +       ++          L+  
Sbjct: 562 DESQDPEMNRSIKI---IEQYSADLPELFAKLRRNAVTDELEATITLS-TAHRSKGLEWD 617

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
           +   +ED  F      +E E   + +                    +  +A   +  +  
Sbjct: 618 VVQLAEDFTFDPFNPENEKEPWIDEMNLLYVACT----------RAMRVLAVNSTMLEIM 667

Query: 505 TLILGAKKGRQ 515
              +  + GR+
Sbjct: 668 KEFVDRRDGRK 678


>gi|229085660|ref|ZP_04217890.1| UvrD/REP helicase [Bacillus cereus Rock3-44]
 gi|228697617|gb|EEL50372.1| UvrD/REP helicase [Bacillus cereus Rock3-44]
          Length = 786

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 28/181 (15%)

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            HI IDE QD S  Q+  ++ +                +  +GD  Q+IY          
Sbjct: 548 QHIFIDEAQDYSAFQYAFLKRIF-----------PHTKMTILGDFNQTIY---------E 587

Query: 238 LREKRINQKRATNAGQKF-SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
              +    + +T  G++    I L  S+RST  I+    ++ +  +  +    +    I 
Sbjct: 588 HASENEFSQLSTLYGEELSERIVLKRSYRSTKQIIEFTKQLITDGDEIEPFQRNGNKPII 647

Query: 297 HRSSRIGQVGTVQLWEQVVS--QHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                +   G   L  +V    Q   +   +  +         +E+  ++ A      I 
Sbjct: 648 -----MEVEGKAALHHKVTEQIQQLQRDGHKTIAVICKTAEESEEAYHALQASLQVRLIK 702

Query: 355 N 355
            
Sbjct: 703 K 703


>gi|227512478|ref|ZP_03942527.1| prophage Lp1 protein 19 [Lactobacillus buchneri ATCC 11577]
 gi|227084303|gb|EEI19615.1| prophage Lp1 protein 19 [Lactobacillus buchneri ATCC 11577]
          Length = 273

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 78/238 (32%), Gaps = 43/238 (18%)

Query: 744 FSPIKNDINEPYILNPSTIDTKGKTNLES---------LLSDNQTFNRGLIIHKLLQVIF 794
                +   +   ++ S          E+           SD      G  +H   +   
Sbjct: 12  SQNYYDPSTDWEYMSFSRFKQFQTCEAETLAELNGQWKPTSDETALLVGNYLHSYFE--- 68

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS---V 851
                      T +   + ++                  + M+    +   ++E+     
Sbjct: 69  ------SPESHTQFLETHPQILAKTGKNKGKPKAQFKTADSMIEALTADQVFNELYQGTK 122

Query: 852 SGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ----EIEHIPYT------HI 901
              +      ++  G+ID ++++ +  +  + KT   + Q    E++H+         + 
Sbjct: 123 ETIVTGKFGGMLWKGKIDCLNLADK--YFVDLKTTRDLHQGYYNEVDHLREDFVSYRQYD 180

Query: 902 AQLSIYEKILKDSYPNKSLVC--LLIYVS-----EPKVFIIPQNKLNKAFAEISTKIP 952
            Q++IY ++++ ++    + C   ++ V+     +  +  IP  +L  A  +   ++P
Sbjct: 181 LQMAIYRELIQQTFG---VDCQPYIVAVTKQTPPDKAILEIPDEQLKAALDDAQKRLP 235


>gi|86159643|ref|YP_466428.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776154|gb|ABC82991.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 591

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 71/265 (26%), Gaps = 24/265 (9%)

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK-KRDVSA 167
            ++ R   Y   K+    L                   +   D       L + +     
Sbjct: 146 ALQPRNVEYAFRKAAAQHLDALNAEANALRGKLLARGYMTCAD--GRALALSRVREARGQ 203

Query: 168 WIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY 227
            +   I       ++DEVQD +    E++  L            +     AVGD  Q IY
Sbjct: 204 PVLKAIAARFPVAIVDEVQDCNSADLEILERLMA----------AGVRTLAVGDPNQDIY 253

Query: 228 SFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGL 287
            F GA+            +RA       S + L  + RST +I      V     +   +
Sbjct: 254 RFRGAD-----------GRRAARLFVSASQLSLTGNHRSTENICRFASSVKLAAGSDTAV 302

Query: 288 SEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
                                 L +  V +  +     ++     +      ++      
Sbjct: 303 GRYGAEVSPVVVLGYEPPLDAGLGDAFVVRLRALRISAEDGAVLAYQEADALAAVGRTKD 362

Query: 348 RIAYTISNMIGTDTIFSNGKKRVIQ 372
             A  ++ +     +F +   R   
Sbjct: 363 AGASRVAKLASAIEVFRSAAPRPAD 387


>gi|332178958|gb|AEE14647.1| hypothetical protein Thena_1018 [Thermodesulfobium narugense DSM
           14796]
          Length = 949

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 101/331 (30%), Gaps = 49/331 (14%)

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
           + ++I+     + +    VF +D       + + +++ +                     
Sbjct: 533 DGIQILGALETRNINFDRVFYLDISDDKLPNVNKEELFLTQD------------------ 574

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
             +  ++       +EE  R  ++ +  ++ ++     ++ S             +    
Sbjct: 575 --IRRILDLPTIKEREELQRTNFINLINSAKEVYFFYSNSDSRTISRFVENIVWDLQKIR 632

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
            + E              + I ++ S       P+E+ + I +      +    FSP   
Sbjct: 633 GSIEMP---------IDSKGINFQASFAQENPVPIEKNDDIIKF-----LKDFEFSPTSI 678

Query: 750 DINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----------QVIFTLPEH 799
           D      L+            + +  D  +   G I+H++L          + I  +   
Sbjct: 679 DRYLRCPLSFYFAYVLNLKEHKEIEEDISSIEIGNIVHEILHFYFKKWLNVEFI-NVDFD 737

Query: 800 KRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS----EVSVSGKI 855
                I        +   +KE           L N +       +S      E   + K+
Sbjct: 738 NELKEIYKILDIKFQEIESKEVLLQKEQCRLALRNVLEKNIKELNSMKILFLEKEFTTKL 797

Query: 856 NCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
           +  +  + + GR+D+I   +   F+ +YKT 
Sbjct: 798 SFNELKVRLVGRVDRIHKLKDEYFLIDYKTG 828


>gi|160899213|ref|YP_001564795.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
 gi|160364797|gb|ABX36410.1| UvrD/REP helicase [Delftia acidovorans SPH-1]
          Length = 689

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 64/491 (13%), Positives = 137/491 (27%), Gaps = 79/491 (16%)

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             + ++ DE+ D      +++R+L           +S       GD  Q I      E +
Sbjct: 264 RYDLVVFDEMHDLDPASLQLLRALVG---------TSGCAFLGAGDFNQHI------EAQ 308

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                +    +      Q  + + L  S R    I   V+ +F++   A      +   +
Sbjct: 309 AWSVFRDKLHQLDDFLPQATATLALTQSRRFGPQIAKAVNALFNVGLTAAPTRFSTVQQL 368

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
           +H          +Q+   +     +    +  S  +   SL         A  + + I  
Sbjct: 369 QHTDDSQCIDQLLQIQAGLARGTPTAAPGELPSPGARNPSLTVILRHEQDACALEWAIHR 428

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH 415
                +    G KR    ++I +L+             + L    ++SV+G++       
Sbjct: 429 --AGKSASFYGFKRFYLQREIALLL-----GLCYAHGMQALSWKAEVSVLGSEILAAF-- 479

Query: 416 LAIKDLMALGRFILSQED--DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
             ++  +  G+  +   D  D S    L   +      +   I        ++ +  Q+ 
Sbjct: 480 --VEGALFYGKGSVDGADMADPSSRHTLAQRMAGEMLHNPQIIWRFLGNQSSL-QGGQRN 536

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFL 533
                S  Q  +    +   + +       F  +  ++        R        +  F+
Sbjct: 537 FQAFGSFLQLPLALQSDARSLLEQADVWGLFAGVALSQAQTAALRQR--------VKAFM 588

Query: 534 NFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDT 593
           +            +   ++ +        R  +    +  + T+  AKG E   V L   
Sbjct: 589 DSVAGMA---VPDMLVQVAAMATRFERTVR--AERGFDFHLSTIEEAKGKEYEHVALPFM 643

Query: 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYV 653
               F       +  +                                         LYV
Sbjct: 644 EPGRFPASAPHALAFL-------------------------------------ERNRLYV 666

Query: 654 GMTRASDQLII 664
            MTRA  +L +
Sbjct: 667 AMTRARKRLWL 677


>gi|89901668|ref|YP_524139.1| hypothetical protein Rfer_2897 [Rhodoferax ferrireducens T118]
 gi|89346405|gb|ABD70608.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 846

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 61/546 (11%), Positives = 143/546 (26%), Gaps = 66/546 (12%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF-ILSQEDDLSFVCMLK 442
               ++T   R +  +  ++V     + L+   A   LM+L R        D     +  
Sbjct: 273 AQDRVLTRRVRAMLEERGVAVRDETGWTLSTTRAAAALMSLLRASAWDASTDGVLDWLKN 332

Query: 443 SPLFNFSEDDIFKICTQRH-----ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
           +P F+       +   +R          + + +Q+         Q        L+ +   
Sbjct: 333 APAFDPQLVTQAEASWRRGAVREWRAVPLGDALQRPVQALRDSLQSGRPLARWLVDLRAV 392

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                 +T ++    G+    +   +E      EF +  +   Q+ ++    +   LE  
Sbjct: 393 LQSAGQWTGLMQDAAGQAVLQALRLHEGAH--TEFADVAVSMSQSEFT--AWVSQSLEAA 448

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
               +   ++   +V I+ +    G     V L                   P+  +  G
Sbjct: 449 SFLPEHPENSAPGQVVILPLSQLLGRPLAAVVLPGCDDVRLPMSPEPTGPWTPAQRELLG 508

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
           +P     + +        ++                                        
Sbjct: 509 LPARAQLAAASRAAWQYALQF--------------------------------------- 529

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                D+++      E +        +   +  A             +         D  
Sbjct: 530 --PHVDVLWRQSEGGEHLMASGFVQELQLGQIGAMAADPRPLRALTAKPGAMPSPRGDAL 587

Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----QVI 793
            + +   +  ++    PY      +        + L ++    + G  +H +L    + +
Sbjct: 588 ALTRLSSTAYEDLRRCPYRFF--ALRQLKLQESDELDTELGKRDFGNWLHTVLKLFHEAL 645

Query: 794 FTLPEHK---RKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTA--MSCDSYS 847
              P      R   I +   +          + L   +    +    +           S
Sbjct: 646 NESPAPDFVGRLAMINAAAEQATLALGLSSSEFLPFAAAWPRVRAGYLEWLAGHEASGAS 705

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQN-IFIFEYKTHHHVPQEIEHIPYT-HIAQLS 905
            V+           + + G+ID+I   Q     + +YKT        + I       QL+
Sbjct: 706 FVAAERWRETALGHLTLVGKIDRIDRLQDGSALVIDYKT-EPRASTAQRIKDAPEDTQLA 764

Query: 906 IYEKIL 911
            Y  +L
Sbjct: 765 FYAALL 770


>gi|312887592|ref|ZP_07747186.1| Ankyrin [Mucilaginibacter paludis DSM 18603]
 gi|311299962|gb|EFQ77037.1| Ankyrin [Mucilaginibacter paludis DSM 18603]
          Length = 953

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 21/188 (11%)

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
                VS  +  +I+   +++++DEVQD + +Q  +I            +  +P      
Sbjct: 300 FDSNIVSYNLLERIEPRYDYVVVDEVQDITNVQLMLI----------LKSLHNPANFVLC 349

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE-LPLSFRSTADILTVVDKVF 278
           GD  Q ++      P      +   +        K +II  L  ++R+T ++  + +++ 
Sbjct: 350 GDSNQIVH------PNFFSWAQ--IKTLFYKQDLKANIIRVLATNYRNTPEVTKIANQLL 401

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
            I     G  +  +T +          G V+  E             ++S       L  
Sbjct: 402 LIKNARFGSIDKESTYLVK--PNSKHTGGVEFLENNAPIKADLNQKTKQSTKFAVLVLRN 459

Query: 339 ESSASILA 346
           E  A+  A
Sbjct: 460 EDKAAAKA 467


>gi|209883313|ref|YP_002287170.1| UvrD/REP helicase [Oligotropha carboxidovorans OM5]
 gi|209871509|gb|ACI91305.1| UvrD/REP helicase [Oligotropha carboxidovorans OM5]
          Length = 567

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 66/549 (12%), Positives = 142/549 (25%), Gaps = 67/549 (12%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
             + +    L  K             +       ++ ++    +  +     Y   +   
Sbjct: 56  SRAAIRQVLLRCKEILTPAERRTVTVQTYHAFCMEMLEAHGRLLGGKPIRFLYPGDERLQ 115

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            S     +          +  +  F+     T +L ++      +R  I      I++DE
Sbjct: 116 KSAFEGDWSVER-RRQAAEMGLYSFDLFAAGTAELFER---CGALRDLIADRFPMIIVDE 171

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH-GAEPKRVLREKRI 243
            QDT   QW ++++L+               +F + D +Q I+ +    +P+R+   +  
Sbjct: 172 FQDTDDNQWRIVQALSG-----------VTDVFCLADPEQRIFDYRDDIDPRRLEILRET 220

Query: 244 NQKRATNAGQKFSIIELPLSFRST-ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
            +    + G          + RS  A IL   D V           +         +   
Sbjct: 221 TKVSEFDLGG--------ENHRSPNAGILKFADAVLRNQAPLPATPDVKQVAYWPNAFAA 272

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
                V +W   V +     NP     +     +   S+              +I  D +
Sbjct: 273 TAHAAV-IWTFSVLRKKGVTNPSVAVLSRSNALISDLSTILSEPHTYNNQPLPVIEHDVV 331

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
           +              +L      +P    L R L+                         
Sbjct: 332 WDAELSAAAALVVASILE--WPTSPANESLVRTLRL--------------------ICAY 369

Query: 423 ALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQ 482
              +         +             E              T +          ++ ++
Sbjct: 370 YKLKNAEDPTKAAADHARKYDEAAGKVEKGEAPRINAAKALVTAHANGIDLIGEPVADWK 429

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
                + ++  +A+         L            S  G + +                
Sbjct: 430 AARTVLQDVPALAELFREVRLVRLFRATD----ALASGLGEQWLA-------------LG 472

Query: 543 SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
           SY+ + +L+  +         A   +     +M +H +KG E   V LV+   +      
Sbjct: 473 SYAGVSDLVKRI--LEQERLIAVERDPQGCVLMNMHKSKGKEFDGVVLVEGAFKSGFFNE 530

Query: 603 IKKMHIMPS 611
            +K    PS
Sbjct: 531 REKPPFEPS 539


>gi|121535717|ref|ZP_01667520.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans
           Nor1]
 gi|121305682|gb|EAX46621.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans
           Nor1]
          Length = 1160

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 105/1002 (10%), Positives = 241/1002 (24%), Gaps = 221/1002 (22%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
            E        L  F  + +  +  L+      T    A  L    +   +          
Sbjct: 47  AERELAATPGLSGFVRAHVMGFRRLAYRVLAETGGGAAPHLTDLGKRLVLRR-------- 98

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS---LTL 129
            LT++    K +      +   D    L      +    D+                L  
Sbjct: 99  LLTERRDELKLLGQAAAQRTFADTLASLIWEFKTYGIAPDKVAAASERLGATPLAAKLHD 158

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              L   +E+  +     D ED       LL     +A I          + +D  +  +
Sbjct: 159 LALLYKAFEDFLQGRYT-DPED----CLRLL-----AAKIPAATLTRGAEVWVDGFEWFT 208

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             ++ V+ +L        +          + +     ++   A   R  + ++  + RA 
Sbjct: 209 PQEYGVLEAL-------LSAAKDVTVTLCLDEPDAPHHADETALFHRSWKTRQSLRARAA 261

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
             G       L    R  A IL  V              E      R  + R  + G   
Sbjct: 262 RLGVSCREEVLTAVRRFQAPILAYV--------------ERYANDARPPAWRGDKQGLT- 306

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
                                     + + ++       IA  +  +   +         
Sbjct: 307 --------------------------IAEAANRRTEVEGIARDMIRLCRDE--------- 331

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
             + +D+ VL+R   D      L   +  DY I    + +     H   + + +    + 
Sbjct: 332 GYRWRDMAVLLR---DMDGYIDLVETVLADYDIPFFSDRQRPAVHHPLAELIRSALEVVT 388

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKI-------------CTQRHETETVYEYIQKFANC 476
            +         LK+ LF  S D+I  +              T+      V          
Sbjct: 389 ERWAYEPVFRCLKTDLFPLSRDEIDLLENYVLEFGIRGSRWTKDEPWTFVRRLSLDEDAE 448

Query: 477 GISKFQHVIKYIHELIHIAQF-----------------------------CSPHDFFTLI 507
              + Q  +  I+ +   A                                 P       
Sbjct: 449 PDERQQAYLDRINAIRCRAAKPLIRFEQALTQAETVREMTAALYGLLADLDVPATLEKWA 508

Query: 508 LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSA 567
             A   R     R   ++   + + L+  +        SL +  + + +    +      
Sbjct: 509 AAASTARDPEQEREHRQIWHSIVDLLDQIVDTCGEQPMSLTDYAAVVNEGLEGLTFNIIP 568

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKS 627
              +   +T  T   L + VV+L      V   +  ++  +      +            
Sbjct: 569 PGLDHVTVTPLTRARLAAKVVYLPGVNDGVLPERGREEGLLSDRERAELASLGLELGPTR 628

Query: 628 RNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYD 687
             ++ ++               ++Y  +TRASD+L +      +  K          + +
Sbjct: 629 EADVFAEQF-------------VVYTALTRASDRLWVSFPLADAEGKALAPSLIIRRLKE 675

Query: 688 SFHNDERVK-KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
               +      ++       +  +    S                     + +     + 
Sbjct: 676 LSGIEALKPLPVEPPPGAEDEYIVHPRRSLAALAAGLRPALAGQPVGTLWRDLYNWAVAR 735

Query: 747 IKNDINEPYIL-----------------------------NPSTIDTKGKTNL------- 770
                +    +                             + +  +              
Sbjct: 736 PDLAADLRRAVAGLFHRNQEQALPPELAQRLYRRQGKLRGSVTRFEGFQACPFQHFARYG 795

Query: 771 ----ESLLSDNQTFNRGLIIHKLL-------------------QVIFTLPEHKRKNFITS 807
               E  ++  +  + G   H  L                   Q    + + +      +
Sbjct: 796 LALKERAVAQLKAPDFGQFFHAALRQFGLRIEKELTADNQRRWQRWGDVQDEEIGPLCEA 855

Query: 808 YCTKNAK------LWPAKEYKNLLLSITRLLEN--PMMTTAMSCDSYSEVSVSGKI---- 855
              + A       L  + +Y+++   + R L+     +        +  V++        
Sbjct: 856 IVQELAPKLQNEILLSSAQYRSITRRLQRTLQRTVTRLVRLDRRSRFKPVALEQAFGRDG 915

Query: 856 --------NCPKKDII-ISGRIDQI--SISQQNIF--IFEYK 884
                         ++ + G+ID++  +  Q      + +YK
Sbjct: 916 AALPALVLTLRDGTVLELVGQIDRLDMAEHQGRRLLAVIDYK 957


>gi|308125367|ref|ZP_07663376.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus K5030]
 gi|308113265|gb|EFO50805.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus K5030]
          Length = 402

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 14/132 (10%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           +        A + + + VR+MT+H AKGLE  VV L           + K          
Sbjct: 13  DDKDLRQLPASAQSIDAVRLMTMHGAKGLEFKVVHLPGMSQGTLPRTYQK---------- 62

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
               P   P            +  LK   ++E   L YV M+RA D+L +   +  SN  
Sbjct: 63  ----PACEPPFGMITGEDDTSVTMLKAEHEKEQECLFYVSMSRAQDKLFMYAPAKKSNNS 118

Query: 675 KSNQRTWYDMVY 686
           +     +   + 
Sbjct: 119 QWKHSPFISRIQ 130


>gi|228964027|ref|ZP_04125157.1| DNA helicase [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795679|gb|EEM43156.1| DNA helicase [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 488

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 48/217 (22%)

Query: 76  QKFTPQKNIIT-QEINKKSPDLKEKLKKSQDEFIKI----------RDRFNTYKMFKSTL 124
           +K  P  N  + + +  +   L + +    +                 R    +  + T 
Sbjct: 120 KKNNPSANFPSIKSVKNERYALMQFISDEIEWIKGSNIKNKDEYMSITRAGRGRDIRVTK 179

Query: 125 ASLTLAKYLNAHYEEAKK---KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                   +   Y E  +   K+  +D EDL      LL++ +        I+   +HIL
Sbjct: 180 KHRDTIYTVLQKYNELLQYHPKHQGIDSEDL---ARILLERINSVP-----INNRPDHIL 231

Query: 182 IDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREK 241
           IDE QD + +Q   I +            ++ ++L    D+ Q IY             +
Sbjct: 232 IDEAQDLNTLQLLSIST------------AARKSLTVGADKGQQIY-------------R 266

Query: 242 RINQKRATNAGQKFSI-IELPLSFRSTADILTVVDKV 277
           R    +        +    L  +FRST  I+ + +  
Sbjct: 267 RTFTWKQAGIDVSGNRSRFLNETFRSTKQIIQLANDF 303


>gi|298376810|ref|ZP_06986765.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298266688|gb|EFI08346.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 959

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 138/437 (31%), Gaps = 76/437 (17%)

Query: 547 LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +      L++   TI      +  + ++IM V   + L+   + ++     +F  +    
Sbjct: 501 IDTFFRLLKRVTDTITIPFHGDPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAAN 560

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             I  +L    G+P +      ++++ +                  Y  + RAS   ++ 
Sbjct: 561 SFIPYNLRRGFGLPTYEH----QDSVWAYH---------------FYRLIERASHVSLLY 601

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              +   +     R  + + Y           +   +            S+  P     +
Sbjct: 602 DTRSNGLQTGEVSRFVHQLHYHYEVPMRDKLVVYNVS------------SSKTPPLAVPK 649

Query: 726 REETIKQLMDEQK--IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
           RE+ +++L   +K        S I   ++ P     S ++   +    S   ++     G
Sbjct: 650 REDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSVVEGIREEEEVSETIESD--VFG 707

Query: 784 LIIHKLLQVI----------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI--TRL 831
            I+HK+++ +            L +  RK+                    ++ S+     
Sbjct: 708 SILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIARAFASEFFKTEVVRSLTGQNY 767

Query: 832 LENPMMTT----AMSCDSY--------SEVSVSGKINCPK-KDIIISGRIDQISISQQNI 878
           L   M+       +  D          SE  ++G I+     +I + G ID++   +  I
Sbjct: 768 LIGEMIRKYVEKILERDGKLTPFVYIESERKINGLISLSDYSEIRLKGFIDRVDEVRDAI 827

Query: 879 FIFEYKTHHHVP---------QEIEHIPYTHIAQL----SIYEKILKDSYPNKSLVCLLI 925
            I +YK+               + E      + Q+     +Y  + ++    K++   + 
Sbjct: 828 RIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMYCWMYAHLTEN--KGKTIQPGIY 885

Query: 926 YVSEPKVFIIPQNKLNK 942
           YV          +  ++
Sbjct: 886 YVRSLFADPFDPSVYHR 902


>gi|260642335|ref|ZP_05415442.2| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|260622483|gb|EEX45354.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
          Length = 957

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/485 (11%), Positives = 135/485 (27%), Gaps = 74/485 (15%)

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE-Q 541
           ++ +    L+ + +  S    +           Q       +    ++   +     E  
Sbjct: 433 NIRELCDYLLRLIKSISI--LYRKEGEYDDIFNQLYRESIFQSHLKINRLYSLIESGELS 490

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
               +L+ LI+++                 ++IM V   + L+   + ++          
Sbjct: 491 VRTDTLKRLITKVLTASNIPFH--GEPAIGLQIMGVLETRNLDFRNLIMLSLNEGQLPKA 548

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
             +   I  +L    G+     ++              +   + E   LLY         
Sbjct: 549 GGESSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAENITLLY--------- 593

Query: 662 LIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPEN 721
                  NTS++  +       M+         + +  L    +    +  +        
Sbjct: 594 -------NTSSDGLNRGEESRFMLQLLVEGPHEITREYLEAGQSPQNTLEIQIEKTPEIL 646

Query: 722 TPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFN 781
             L R     Q          + SP   +      L        G    + + ++  +  
Sbjct: 647 RRLYRAYDTAQPESV------ILSPSALNTYLDCRLRFYYRYVAGLKTPDEVSAEIDSAL 700

Query: 782 RGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKLWP--AKEYKNLLLSIT------ 829
            G I H   Q+    +    +  ++  +        KL     + +K  L  +       
Sbjct: 701 FGTIFHLSAQLAYTDLTANGKMIQREDLERLLRDEIKLQGYVDQAFKQELFKVAPEEKPE 760

Query: 830 ----RLLENPMMTTAMSCDSYSEV---SVSG-----------KINCPKKDIIIS--GRID 869
               +L+ + ++ + +     +++                   I      + +   G ID
Sbjct: 761 YNGVQLINSKVIVSYLKQLLRNDLQYTPFEMVAMEKKVSEKITIQTALGPLTLRLGGTID 820

Query: 870 QISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEKILKDSYPNKSLV 921
           ++   +  + I +YKT      P  IE +         +I Q  +Y  I+    P   + 
Sbjct: 821 RMDAKEGTLRIVDYKTGGSPKIPANIEQLFTPSETRPNYIFQTFLYAAIMSRKQPLM-VA 879

Query: 922 CLLIY 926
             L+Y
Sbjct: 880 PALLY 884


>gi|29377308|ref|NP_816462.1| hypothetical protein EF2840 [Enterococcus faecalis V583]
 gi|29344774|gb|AAO82532.1| conserved hypothetical protein [Enterococcus faecalis V583]
          Length = 267

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 68/213 (31%), Gaps = 37/213 (17%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  +D +    G  +H   +    + E  ++   +   +        K
Sbjct: 34  EAAALAKLKGEWTPENDPKALLVGNYVHSYFES-PEIHEAFKEENKSKMFSSRKPFGLLK 92

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +          +       +  G+ID +++ ++  +
Sbjct: 93  DFQIAEQMIERLKQEEAFLNIYQGEK------EVIVTGEIGGAMWKGKIDCLNLEEK--Y 144

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y         I++  
Sbjct: 145 FVDIKTTKDMHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQYDK-------IFLPL 197

Query: 928 ---------SEPKVFIIPQNKLNKAFAEISTKI 951
                    SE K+  + + K+     E+   I
Sbjct: 198 IAAVSKQTPSEAKLITLSEEKMIYELEELKENI 230


>gi|242280177|ref|YP_002992306.1| hypothetical protein Desal_2713 [Desulfovibrio salexigens DSM 2638]
 gi|242123071|gb|ACS80767.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
          Length = 967

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/522 (10%), Positives = 138/522 (26%), Gaps = 52/522 (9%)

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN 447
           L+  + +  +N    +    D   L  H  +K           Q     F     +    
Sbjct: 345 LVEAVLKLQENRNGRTFYWKDILALIRHPYLKM----LEVNGDQPLRTIFHQWENALRHG 400

Query: 448 FSEDDIFK-ICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
               D+   +     +   + +  +          Q  I    ++  +++        + 
Sbjct: 401 APYADVTDFVPVYSDDNGNLVDNPETTEELRSEAVQICIDGFKDIETLSELADSLQAMSE 460

Query: 507 ILGAKKGRQQFISRFGNE-----VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
           +L  + G         +E     + +V+ E    ++ NE    S    +  +L       
Sbjct: 461 MLRQRGGTLWNRYLLDSECLFRLMNEVIPELRESSISNEIFGQSLCFSIFRQLLSSQRVS 520

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                 +   ++++ +  ++ L     F++DT  +           +   L     +P  
Sbjct: 521 FEPDPISG--MQVLGMLESRLLNFKRTFILDTVDEKLPGTDPYDPLLPDQLRHLLDLPDS 578

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
             +               +     E + + Y    +              + K    R  
Sbjct: 579 RERESVAT------YNFYRLIMGSEESCIFYQSGVQP----------GLLDSKSIRSRFV 622

Query: 682 YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPK 741
             ++++     + +        +    +       +         ++ ++ L+  + +  
Sbjct: 623 EQLLWEIEQQRKEIITPGEEFPLKAVNFPVGAIVNNPAAIPKEPLQDKLENLLKFKGLSP 682

Query: 742 KLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
                        +    S +      +      D      G +IH +L+    L  H  
Sbjct: 683 SAIDCYVGCPKLFFFRYLSNVRESVTVD-----QDGDRAGFGDLIHSVLK--DFLEPHLN 735

Query: 802 KNFITSYCTKNA-------KLWPAKEYKNLLLSITRLLENP---MMTTAMSCDSYS---- 847
           K          A       +L     Y NL   I + LE      +              
Sbjct: 736 KEICGKDLDAQALQDLFMLRLERDSLYPNLAYDIKKSLEQAGKNRLA-LFLKSLKPTKIV 794

Query: 848 --EVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
             E     ++      + I GR+D++       ++ +YKT  
Sbjct: 795 ELESDSQAELEMDDFSVRIHGRVDRVDERAGERYVLDYKTGR 836


>gi|182625733|ref|ZP_02953501.1| putative helicase [Clostridium perfringens D str. JGS1721]
 gi|177908995|gb|EDT71477.1| putative helicase [Clostridium perfringens D str. JGS1721]
          Length = 706

 Score = 61.5 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 28/171 (16%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              +I       +    +  S      +   +   KK+  + D   ++     L      
Sbjct: 430 RIREIVKEVMDSRAKLDSWISREDVLDIYDRFNGNKKEYTINDLAPILYLAIKL------ 483

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
                 K  ++  H++IDE QD S +Q++V+R LT             +    VGD  Q 
Sbjct: 484 ---EGKKATKDYRHVVIDEAQDYSPLQFKVVRELTG-----------TKYFTVVGDVNQR 529

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           +  +  ++   ++   +I             I  L  S+RST +I+   +K
Sbjct: 530 LIKY--SDLAPMMELGKIFDDVNP------EIYNLNKSYRSTYEIMEYANK 572


>gi|195941116|ref|ZP_03086498.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str.
           EC4024]
          Length = 178

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 67/210 (31%), Gaps = 39/210 (18%)

Query: 522 GNEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
           G +  + +++  ++        E +   +L ++++         +       ++V++MT+
Sbjct: 2   GRDAHENVNQLFSWMTEMLEGSEIDEPMTLTQVVTRFTLRDMMERGESEEEADQVQLMTL 61

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H +KGLE P V+LV     +  H+                                    
Sbjct: 62  HASKGLEFPYVYLVGMEEGLLPHQSSID-------------------------------- 89

Query: 638 HLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
              +   +E  RL YVG+TRA  +L            +  +      + +   +D   ++
Sbjct: 90  ---EDNVDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQ 146

Query: 698 IKLTNSINKDEWIAYEWSTHHPENTPLERE 727
            +   +  +          +        +E
Sbjct: 147 ERKVITAEERMHKGQANVANIRAMLAKAKE 176


>gi|300114628|ref|YP_003761203.1| putative DNA repair protein [Nitrosococcus watsonii C-113]
 gi|299540565|gb|ADJ28882.1| putative DNA repair protein [Nitrosococcus watsonii C-113]
          Length = 912

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 62/547 (11%), Positives = 136/547 (24%), Gaps = 81/547 (14%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-----FSEDDIFK--I 456
              +    L D   +   + +      +        +L+SP        FS   +    +
Sbjct: 293 YNLSLAQPLADSPLVHTALLILELSKGELSMAEVGALLRSPFVGAAEQEFSHRALLDAYL 352

Query: 457 CTQRHETETVYEYIQKFANCGISKFQH-----VIKYIHELIHIAQFCSPHDFFTLILGAK 511
              R ET ++    +           H     + + + +              +  + + 
Sbjct: 353 RKTREETVSLERLWKAAITAREEDAAHHGYPVLGEGLQQFKAEVDSLPARQPPSGWVQSF 412

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELIS------------ELEQYPP 559
               +++   G      LD      +     S  S   L              +  +   
Sbjct: 413 T---RWLQMLGWPGERPLDSEEYQAVSAWHKSTQSFSSLDRVVPSLKKNAAIGKFRRLLM 469

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                       V++M V  A G +    +L+     ++                 P +P
Sbjct: 470 ETLFQPENPIVPVQVMGVLEAAGEQFDAAWLLGLHDGIWPMAPRPN----------PLLP 519

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQR 679
           I + +     +  ++      +   E   RLL          +I+       ++      
Sbjct: 520 IDLQRRHRLPHASAERELAYTRVVTE---RLLASA-----PMVIVSHPCREGDKDLRPSP 571

Query: 680 TWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKI 739
              ++        +        N I +   +        P      +      L+  Q  
Sbjct: 572 LIAELAPVPPERLQLASVDAYVNEIQRTGRMETLVDAQGPPLEAGTQVAGGTGLLKAQAA 631

Query: 740 PKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
                                     G   LE      +  ++G++IH  LQ ++   ++
Sbjct: 632 C---------------PFRAFAEYRLGAKRLEEPSVGLEALDQGILIHVALQYLWEKLQN 676

Query: 800 KR------KNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN--------PMMTTAMSCDS 845
           +          + +   K AK   A +      + T              ++        
Sbjct: 677 QHTLLSCNAEELQALVAKAAKQAIATQTAVRPQTFTERFTAIEQERLEQLLLEWLERDKQ 736

Query: 846 YSEVSV---SGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEI-EHIPYTH 900
               +V             + +  R D+I   +     I +YKT    P+      P   
Sbjct: 737 RPPFAVLHQEKSQPLNLGGLSLDTRADRIDQLESGERVIVDYKTGRSNPRHWFGERPEE- 795

Query: 901 IAQLSIY 907
             QL +Y
Sbjct: 796 -PQLPLY 801


>gi|3249557|gb|AAC38774.1| DNA helicase II UvrD [Pseudomonas aeruginosa PAO1]
          Length = 196

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 35/143 (24%)

Query: 550 LISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
           + + L        +    A+ + V++MT+H+AKGLE P+VFLV     +F HK       
Sbjct: 1   MQAFLSHASLEAGETQADAHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSL---- 56

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                                          +    EE  RL YVG+TRA  +L++    
Sbjct: 57  ------------------------------EESGRLEEERRLAYVGVTRAMQRLVLTYAE 86

Query: 669 NTSNEKKSNQRTWYDMVYDSFHN 691
                           + +    
Sbjct: 87  TRRLYGSETYNKVSRFIREIPPA 109


>gi|196047871|ref|ZP_03115049.1| UvrD/REP helicase [Bacillus cereus 03BB108]
 gi|196021127|gb|EDX59856.1| UvrD/REP helicase [Bacillus cereus 03BB108]
          Length = 273

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 131 KYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + + + YE+ KKK  ++DF+D+++   +LL        +   I  +I ++LIDE Q
Sbjct: 218 RDIYSMYEQFKKKEHLIDFDDILVIMYELLTTNMKLKSL---IQNKIKYVLIDEFQ 270


>gi|315923318|ref|ZP_07919558.1| ATP-dependent DNA helicase replicase [Bacteroides sp. D2]
 gi|313697193|gb|EFS34028.1| ATP-dependent DNA helicase replicase [Bacteroides sp. D2]
          Length = 573

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 38/174 (21%)

Query: 142 KKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           +KN +L++ DL  +   +  L   +  +++         H+LIDE+QD S IQ++VI+ L
Sbjct: 323 RKNRILEYADLAPLAYLHIALNGNNAQSYV--------KHLLIDEMQDYSPIQYKVIQKL 374

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSI--YSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        P     +GD  QS+  Y    A+       ++              I
Sbjct: 375 Y------------PCRKTILGDASQSVNPYGSSTAD-----MIQKAFAT--------GEI 409

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGL-SEDSTTTIRHRSSRIGQVGTVQL 310
           ++L  S+RST +I +   K+    E    +   +    +  +++     G   L
Sbjct: 410 MKLCKSYRSTFEITSFAQKIQPNNELEPIMRHGEHPKILPFKNTEEEIQGIADL 463


>gi|294507834|ref|YP_003571892.1| ATP-dependent nuclease [Salinibacter ruber M8]
 gi|294344162|emb|CBH24940.1| ATP-dependent nuclease [Salinibacter ruber M8]
          Length = 1073

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/471 (10%), Positives = 114/471 (24%), Gaps = 69/471 (14%)

Query: 526 IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLES 585
              LD  +   +  E +       L   LE       RA         ++ + +A     
Sbjct: 527 WQRLDRLVRVPVDYEASGPQLAALLRRWLE---GQYVRAEHPRPGTAHVVPLESAGYGAR 583

Query: 586 PVVFLVDTGSQVFS-----HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK 640
             +++V   S   S        ++        +   G       +        +      
Sbjct: 584 SHLYVVGMDSDTLSTAAVEGAMLRDPDRRALSDSMDGELPERRSASDEAQWHHEQALARH 643

Query: 641 KSTQEEYNRLLYVGMT----RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                 Y R+  +        +   L + +     +E+        +    +        
Sbjct: 644 TGVLSLYTRIFDLDSGEERYPSPLFLRLAEAPTVESERTEGIVPTGERTRLNDMEAWLTA 703

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY- 755
                             S  +P     E     +Q          L +    +++    
Sbjct: 704 FRNRGGEGRGTGTARDALSDCYPWLRRGEDARQARQSDAYTAHDGLLEAGTYPELDFLRD 763

Query: 756 -----ILNPSTIDTKGKTNLE---------SLLSDNQ--------TFNRGLIIHKLLQVI 793
                 ++   ++T  +T              L +             RG I+H   +  
Sbjct: 764 RENGGPMSAGRLETFAETPYLYFLKYVLGVEPLDEPALDDEPWLNALRRGSILHATFEAF 823

Query: 794 -------FTLPEHKRKNFITSYCTKNAKLWPAKEY---KNLLLSITRLLENPMMTTAMSC 843
                     P  + +  +        K    +       +  +  R L    +    + 
Sbjct: 824 MTTLRERDERPAAEHEPLLEDTLQAAFKAETEQVAPPSDVVEEAAFRRLRADALVFLRAE 883

Query: 844 DSYS--------EVSV-------------SGKINCPKKDIIISGRIDQISISQQNIFIF- 881
            ++         EV               +  I    +++ + GRID++           
Sbjct: 884 TAHCRTHAPLYHEVGFGYGPYRRQEEDFGAVTIPVEGREMSLRGRIDRVDRRPDGTLAVW 943

Query: 882 EYKTHHHVP-QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPK 931
           +YKT      +E + +      Q ++Y   L     ++++     Y    +
Sbjct: 944 DYKTGRASSFEEGDPVADGAQLQWALYAYALSTL-TDETVGTSGYYFPTTR 993


>gi|284032498|ref|YP_003382429.1| ATP-dependent nuclease subunit B-like protein [Kribbella flavida
           DSM 17836]
 gi|283811791|gb|ADB33630.1| ATP-dependent nuclease subunit B-like protein [Kribbella flavida
           DSM 17836]
          Length = 1050

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 62/598 (10%), Positives = 152/598 (25%), Gaps = 74/598 (12%)

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYE 468
           R    + + +     L R       D   V + +      +E           +      
Sbjct: 369 RDFTGERIPVPQWERLSRAAGVVRGDDWDVRLARYAD---TERRTADQERGAEDPRPAVA 425

Query: 469 YIQKFANCGISKFQHV-IKYIHELIHIAQFCSPHDFFTLIL----GAKKGRQQFISRFGN 523
              +       +     ++    L   A   S  +   ++L                   
Sbjct: 426 RRAEHNASHALRLHAFAVELRRRLNAAALMESWSELSHVVLRLFHDLLGDYASLPVEEQY 485

Query: 524 EVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
             + V       +  +E  + +SL  L   L+                V +  +  + GL
Sbjct: 486 AAVAVEGTLRGLSTLDELGTPASLTVLRDVLDLELQQSLPRVGTFGTGVLVAPLSASIGL 545

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR---NNIVSDLIKHLK 640
              VVF+V     ++  +  +   +   + +     +   + +      ++++       
Sbjct: 546 SVDVVFVVGLAEDLYPGRLHEDALLPHRVREAAAPELASARDRLDRKQRHLLAAFSAGAS 605

Query: 641 KSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKL 700
           +         L     R   + ++      S +       W    YD            L
Sbjct: 606 RVVASFPRGDLRRSSRRLPTRWLLGTLRELSGDHALAATVWDQASYDGHLLTSASYSGSL 665

Query: 701 TNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP---------IKNDI 751
           T +        ++        T  +      +L+   +   +             + +  
Sbjct: 666 TTAKLPATEQDWQVRAAAAGLTLTDAVVDRARLLLRARAADEFTRFDGNLSGVDGLPDYA 725

Query: 752 NEPYILNPSTIDTKGKTN---------------LESLLSDNQTFNRGLIIH--------K 788
            E  I +P++++                         L        G +IH        +
Sbjct: 726 TEDRIASPTSLEAYAACPHAYFVERLLQVQPLEAPEDLLVISPVQVGNLIHNSLDAFVTR 785

Query: 789 LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT---------- 838
           L   +    E       +   T  A L    E + L     RL +   +           
Sbjct: 786 LAGSLPGYGEPWSPEQRSLLLTIGADLAQRFEAEGLTGHP-RLWQRERLRILGDLMVLLD 844

Query: 839 ---TAMSCDSYSEVSVSGKINCPKKD----------IIISGRIDQISI-SQQNIFIFEYK 884
                 +  + S V+   +     +           +++ G  D++ +     I++ + K
Sbjct: 845 DDDRWRAEHNASVVASELRFGLDGEPPVEIPIPSGRVLLRGSADKVDLGKDGTIYVTDVK 904

Query: 885 TH---HHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK--SLVCLLIYVS-EPKVFIIP 936
           T     +   E + +      QL +Y    +    ++   +     +V    +   +P
Sbjct: 905 TGGFSRYEAIENDPVAAGTKLQLPVYAYAARARLGDESTPVEAAYWFVRKGGRRIPVP 962


>gi|255324632|ref|ZP_05365749.1| superfamily I DNA or RNA helicase [Corynebacterium
           tuberculostearicum SK141]
 gi|255298538|gb|EET77838.1| superfamily I DNA or RNA helicase [Corynebacterium
           tuberculostearicum SK141]
          Length = 741

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 85/281 (30%), Gaps = 50/281 (17%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQAS-------Q 58
            L+ + +   +  + WP  +   +D+   +  S E          +  Q+A         
Sbjct: 406 DLAEDAAVTALIDEFWPELH--PTDVLAALVSSRERIASAAHGYDEETQEALYRAEGRAW 463

Query: 59  TQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYK 118
           T         L+          +K         +  D ++ L    D         N   
Sbjct: 464 TGSDAALLDELAVLIGLPNPEEKKAADDAAWRDQVADAEDAL----DILSSSESTDNDDD 519

Query: 119 MFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEIN 178
           MF++                E    + V+D E L     ++  KR  +   R        
Sbjct: 520 MFEA----------------EILSAHDVIDAETLAHR-QEVRDKRTTAQRAREDHTWAYG 562

Query: 179 HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238
           HI++DE Q+ + ++W ++                 R +  VGD  Q+        P  V 
Sbjct: 563 HIIVDEAQELTPMEWRMLFR-----------RCPSRWMTLVGDTSQT------GSPAGVD 605

Query: 239 REKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
                 +       Q+F    L +++R+   I  + + +  
Sbjct: 606 DWGEALE---PFVAQRFRHHFLTVNYRTPQPITDLANGLLE 643


>gi|120597566|ref|YP_962140.1| hypothetical protein Sputw3181_0735 [Shewanella sp. W3-18-1]
 gi|120557659|gb|ABM23586.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
          Length = 711

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 87/689 (12%), Positives = 195/689 (28%), Gaps = 107/689 (15%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSL----SMETGNPTILKKAQTLQQA 56
           +K+R G S       I++ LW +      ++           ++  N  +        + 
Sbjct: 73  IKSRLGNSDIVQVSTIHERLWDIIKNAQPELLICHKEKIISVLDQHNNELNNINNKNTKT 132

Query: 57  SQTQCIEERFSLLSSFFLTQKF---------TPQKNIITQEINKKSPDLKEKLKKSQDEF 107
                 EE+   +S    T+           T  ++   + I +    L +   K+ + F
Sbjct: 133 FAKLTTEEKLEFISLAIKTKDLFYKSEKLNATAFRDYYKKNIEENKYKLLDIHLKNIENF 192

Query: 108 IKIRDRFNTYKMFKSTLASLTLAKYLNAH--YEEA--KKKNCVLDF--EDLIINTNDLLK 161
            KI       +  +       ++  +     Y+      +   + F  + L+     L+ 
Sbjct: 193 KKIVKIIYKIEKLE--ACLERISTGIENRVNYDSKVNLDRLHYMKFSHDTLLEYGLKLIN 250

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
                  I   I     +I IDE QDT       + S  +      N  +    +   GD
Sbjct: 251 TYPTLCRI---IIDTYPYIFIDEYQDT----HCNVISFFKTINEYANKKNKKWMVGYFGD 303

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q+IY+                 ++          I+   + RS   I+ + +K+ +  
Sbjct: 304 TAQNIYNDG-------------VGRKIEELHSGLINIQKIFNRRSHQQIIDIANKIRADN 350

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
              + + E              +           ++         E  T  F+   +   
Sbjct: 351 IVQKPIFEKRNEGSVKFYYHDSE-----------NKQTIAQQFLSEYQTDLFNVDSETEV 399

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
            +  +++I   +  +        NG   V        +  +  +T +++     L     
Sbjct: 400 INTESKKIHCLV--LTNKLMASFNGFGDVYDIYQNSSIYFENLNTQVLSQQLEKL----- 452

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
                        H  I  +  L         DL    +    +F  S  ++        
Sbjct: 453 -------------HPTILTIYYLISL----YQDLQKRTVSYFDIFGSSSKNL-------- 487

Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRF 521
              T  +           K   +  +I  +    +  +  +  + IL  +   +Q     
Sbjct: 488 ---TFAKASLIIQELETDKLTSLGDWIDLITDRLKNSTAKETLSKILINRVHYEQDKVTS 544

Query: 522 GNEVIDVLDEFLNFTLRNEQNSYS-----SLQELISELEQYPPTIKRAHSANHNEVRIMT 576
            +   D L   +N  + ++           L  L   ++     +        +++   T
Sbjct: 545 SDIFRDTLMSRINSLMSDDSEEDDKAKEKILSILNLPIKSLVNWVNFIDGIEADDISYHT 604

Query: 577 VHTAKGLESPVV-FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
            H  KG E   V  +++      +    K   ++   + +    ++    +   +I +  
Sbjct: 605 YHGTKGEEYNNVAIILEHSFGNKNRDKFKDYFLVLQQSTEETQFLFTDPVEEEKHINTQ- 663

Query: 636 IKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                         LLYV  +RA   L +
Sbjct: 664 -------------NLLYVACSRAIKNLRV 679


>gi|294812899|ref|ZP_06771542.1| Helicase protein [Streptomyces clavuligerus ATCC 27064]
 gi|326441325|ref|ZP_08216059.1| hypothetical protein SclaA2_09674 [Streptomyces clavuligerus ATCC
           27064]
 gi|294325498|gb|EFG07141.1| Helicase protein [Streptomyces clavuligerus ATCC 27064]
          Length = 815

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 34/269 (12%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
             LW          +  ++  + +     +    + +        +E +  L+   +   
Sbjct: 442 DALWSRSGAAGRHTDPELAAELRSSFDEDVTGEDSFRLFL-----DEWWPELTPRAVLAA 496

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
              ++ +        +P    +L +S            +            L        
Sbjct: 497 MADERRLSRWARRVLNPGEVRRLARSLKRVGPDGTGPLSVHDVALLDELHALLGA----- 551

Query: 138 EEAKKKNCVLDFEDLIINTNDLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
               ++   LD  D +    +L+    + +   A        E  H+++DE QD + +QW
Sbjct: 552 PARPRRKRELDPLDQLTGLEELMPQREESQRERAERLAAERTEYAHVIVDEAQDLTPLQW 611

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            +I                  T   VGD  QS       EP+     +           +
Sbjct: 612 RMI-----------GRRGRHATWTVVGDPAQS----SWPEPEEAAELRDE-----ALGSR 651

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPE 282
                +L +++R+ A+I  +  KV +   
Sbjct: 652 PRRRFQLTVNYRNPAEIAELAAKVLARAM 680


>gi|303232790|ref|ZP_07319475.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
 gi|302481276|gb|EFL44351.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
          Length = 752

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/415 (13%), Positives = 125/415 (30%), Gaps = 39/415 (9%)

Query: 5   FGLSLNESYELI--YKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
            G   + +   +       P      +D+    + S      + ++ A  L++  +    
Sbjct: 333 LGEGADTTLADLDCIDAAIPSISITTNDLCDICAGSYVLLKRSSIEAA--LEKFEKYPFG 390

Query: 63  EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKS 122
             R +L      T+    ++ I      ++  +  + L    ++     +        + 
Sbjct: 391 ARRLTLTKDELHTR---LERKISMLAHEEELQEKMQSL-DVDEQMEIFGEVITPRNDEEI 446

Query: 123 TLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI----- 177
              +   AK+L     EA      L F+ L      +L++   +A     + Q +     
Sbjct: 447 LRYAKQFAKHLFGACHEAIDDERWLRFDKL---CAHMLQRAQATAVEVLYLQQRLMGSKA 503

Query: 178 ---NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                ++IDEVQD +  Q +V+             + S   +   GDE+Q+I S  G   
Sbjct: 504 PNVRFVMIDEVQDYTPAQLKVL-----------GMYFSHAHITLAGDERQAI-SAQGTTI 551

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           K +    R         G+   ++ L  S+RST +I ++   +F   E     S     T
Sbjct: 552 KEIAEVMRTI-------GKHPVVLPLTTSYRSTPEITSLFWNLFDAKEGVHVESVQPEGT 604

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                +         +   +         P   +          E+      R   +   
Sbjct: 605 KPQIVTVSADDQESYITTVMGLMSTGAGAPGSGAVDKDSTQDGLEAIIMHDTRGAKWMAR 664

Query: 355 NMIGTD-TIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           N+      +     + +++    +V+  K         +      +      G  
Sbjct: 665 NLSARGCHVHLITNESMLEKNGCVVMSIKLAKGLEFDHVILADAQEAHYPSTGEG 719


>gi|299783612|gb|ADJ41610.1| DNA helicase [Lactobacillus fermentum CECT 5716]
          Length = 576

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 69/243 (28%), Gaps = 27/243 (11%)

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +   DLL           +  +EI  + +DEVQD    Q   ++                
Sbjct: 326 LYLYDLLTG--------KRGQREIRFVFVDEVQDYDAFQLAYLKFCF-----------PK 366

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
                +GD  Q+I++ + A    + +   + +       +K  +I+L  S+RST  I   
Sbjct: 367 ARFTLLGDLNQAIFTHNNAR-SLLQQLGTMFE------PEKTKVIQLTRSYRSTKQITNF 419

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
              +    E  +    +        +          +      Q D           +  
Sbjct: 420 TKAILKDGEAIEAFEREGELPRVLTAPSEEDAVNQVVATLAKYQADHDTTAIITKTLTDA 479

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           + +      +  A  +  T +  +   TI            D  V+V             
Sbjct: 480 EKITALLKEAGQAVTLIQTENQRLAQGTIVVPSYLAKGLEFD-AVIVWDANQAKYQGDAE 538

Query: 394 RFL 396
           R L
Sbjct: 539 RQL 541


>gi|226228979|ref|YP_002763085.1| hypothetical protein GAU_3573 [Gemmatimonas aurantiaca T-27]
 gi|226092170|dbj|BAH40615.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 403

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 74/252 (29%), Gaps = 63/252 (25%)

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQ---------TFNRGLIIHKLLQVIFT-------LP 797
           P   +PS +    +  L ++L   +             G + HKLL++           P
Sbjct: 14  PATFSPSQLAFGEQCLLRAVLGSTRDLPTLTAHPAAALGSVFHKLLELAVRGEIPRTGTP 73

Query: 798 EHKRKNFITSYCTKNAKLW-------------------PAKEYKNLLLSITRLLE----- 833
               +  +                                ++ + +L    + L      
Sbjct: 74  GEDAERTLDRLLDAEDARLAAMRPGDPPRLREVFPPLMWRRKRRVVLDLAEKYLSGAVPR 133

Query: 834 --------NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT 885
                               ++EV +          + + GR D I  +  ++ I + KT
Sbjct: 134 AATSSGGGARNARDLHQNGGWAEVQIEVPA------LRLWGRADMIQRTAGDVVIRDLKT 187

Query: 886 HHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKA-- 943
              V  + + +P     Q+ +Y  +    +P+  +    + V       +   + ++A  
Sbjct: 188 GRVVTNDGDVLP-HIERQMRLYGAMAHAVWPSAQVS---LLVDHGVEREVGFAREHEADV 243

Query: 944 ---FAEISTKIP 952
               +++  ++P
Sbjct: 244 LKWLSDVLARLP 255


>gi|57505918|ref|ZP_00371842.1| F-box DNA helicase 1 [Campylobacter upsaliensis RM3195]
 gi|57015718|gb|EAL52508.1| F-box DNA helicase 1 [Campylobacter upsaliensis RM3195]
          Length = 487

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 25/147 (17%)

Query: 152 LIINTNDLLKKRD--VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           L   T  L  + D  + A+   K+  E ++IL+DE QD +    +++             
Sbjct: 166 LQDETCALAYEHDFYLKAYQLSKVKLEYDYILVDEAQDINGCVIDIV------------L 213

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
           +   + +F  GD  QSIY F GA     L  ++           K   + L  SFR  + 
Sbjct: 214 NQEAKKVFI-GDTYQSIYKFRGAINSLELLAQK----------PKAHTLYLTQSFRCPSS 262

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIR 296
           I  + +    I    +         I+
Sbjct: 263 IAKIANHYLKILNAPKDFQGTLKNKIK 289


>gi|304317888|ref|YP_003853033.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302779390|gb|ADL69949.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 745

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 19/148 (12%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +  HI++DE QD S  +  +++ +               ++  VGD  Q IYS+ G   
Sbjct: 522 GKFTHIVVDEAQDFSEFKLYLLKEIV-----------KGDSITIVGDAAQGIYSYRG--- 567

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
              ++          N    +    L  S+RST +I+   + V    +N   +  +    
Sbjct: 568 ---IKSWDDLNNHVLNGKATYK--MLKKSYRSTVEIMEYANSVIDKSKNKSIVKAEPIMR 622

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
                  +      +L   +++      
Sbjct: 623 HGDVPEIVRIRDYDELIHDILNNLQDDE 650


>gi|289640634|ref|ZP_06472806.1| conserved hypothetical protein [Frankia symbiont of Datisca
           glomerata]
 gi|289509523|gb|EFD30450.1| conserved hypothetical protein [Frankia symbiont of Datisca
           glomerata]
          Length = 281

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 44/135 (32%), Gaps = 10/135 (7%)

Query: 783 GLIIHKLLQVIFTLPEHKR----KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
           G  +H  L+  +  P  +R       +            A++          ++      
Sbjct: 53  GSSVHNALRAWWDEPLARRTPTRAAHLVRLLWITDGWRDAEQSTTWRERAAEMVG--RYV 110

Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPY 898
             +   +    +V  ++    + + +SGR+D++      +   +YKT    P + +    
Sbjct: 111 ATLDP-AREPRAVERQVAARTERLALSGRVDRLDDRDGELVAVDYKTGRRPPTDDDARVS 169

Query: 899 THIAQLSIYEKILKD 913
                L++Y   +  
Sbjct: 170 ---PALALYALAVSR 181


>gi|83309520|ref|YP_419784.1| hypothetical protein amb0421 [Magnetospirillum magneticum AMB-1]
 gi|82944361|dbj|BAE49225.1| Inactivated superfamily I helicase [Magnetospirillum magneticum
           AMB-1]
          Length = 975

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/361 (8%), Positives = 86/361 (23%), Gaps = 44/361 (12%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           E       R+   +H  + I     A+   + ++ L       +         +   +  
Sbjct: 547 ELMGAVAVRSAWDHHPRLFIWGPLEARLQHADLLILGGLNEGTWPAPPEADPWMSRPMQA 606

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G+     +     +                           A+ ++++ + S      
Sbjct: 607 AFGLAPPERRIGLSAHDF---------------------AQGFAAPRVVLSRSSRVDGTP 645

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
               R    +      +     +               E  T      P        + +
Sbjct: 646 TVPSRWLMRLDAVMKGSGLAFDQDAGQWLDWHALLDRPERWTRPEIPAPAPPVSARPRRL 705

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
              +I   +  P          L            L+ + +D      G ++H+ L++  
Sbjct: 706 SVTEIETWMRDPYAIYAKHVLRLRA----------LDPIDADPGAAEYGSMVHEALELFL 755

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLL---------LSITRLLENPMMTTAMS-CD 844
                           +  +     +  +            S+ R +    +        
Sbjct: 756 EAWPRDLPGDPQGELLRIGREVFEAKVTSPALWAFWWPRFDSVARWVAAKEVARRPGVAR 815

Query: 845 SYSEVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQ 903
            ++E   + +I  P     ++ + D++       + + +YKT          +      Q
Sbjct: 816 VHAEAGGALEIEAPAGPFTLTAKADRLDEMKDGTLALIDYKTGTPPRAR--EVAAGFAPQ 873

Query: 904 L 904
           L
Sbjct: 874 L 874


>gi|319646519|ref|ZP_08000748.1| hypothetical protein HMPREF1012_01784 [Bacillus sp. BT1B_CT2]
 gi|317391107|gb|EFV71905.1| hypothetical protein HMPREF1012_01784 [Bacillus sp. BT1B_CT2]
          Length = 166

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 41/195 (21%)

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGN-----EVIDVLDEFLNFTLRNEQNSYSSLQELIS 552
             P +  +              R        +  D L +      +       ++ E + 
Sbjct: 1   MKPVEAISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKKF-----KTIPEFLE 55

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            ++      K+    +   V+++T+H AKGLE   V+++        H            
Sbjct: 56  HVDHMRAAEKQKA--DGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFAL-------- 105

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                +  +   ++  EE  RLLYV MTRA D+L I   S    
Sbjct: 106 ---------------------ETARKGDETALEEERRLLYVAMTRAEDRLYISVPSFRRG 144

Query: 673 EKKSNQRTWYDMVYD 687
                 R    ++  
Sbjct: 145 RTAYRSRFLQPILRP 159


>gi|295112653|emb|CBL31290.1| hypothetical protein [Enterococcus sp. 7L76]
          Length = 271

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 71/207 (34%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  +D +    G  +H   +    + E  ++       +        K
Sbjct: 38  EAAALAKLKGEWTPENDPKALLVGNYVHSYFES-PEIHEAFKEENKNKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +          +       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIYQGEK------EVIVTGEIGGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDMHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|283770032|ref|ZP_06342924.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus
            aureus subsp. aureus H19]
 gi|283460179|gb|EFC07269.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus
            aureus subsp. aureus H19]
          Length = 1158

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 92/752 (12%), Positives = 197/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I          +    F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I  +  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGMMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 1020


>gi|257466894|ref|ZP_05631205.1| hypothetical protein FgonA2_05600 [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918041|ref|ZP_07914281.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691916|gb|EFS28751.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
          Length = 876

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 59/453 (13%), Positives = 123/453 (27%), Gaps = 42/453 (9%)

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR-NE 540
           +  I+ +   +              I    + +         E  DVLD F     R   
Sbjct: 366 ESFIEKMTLFLQDLFQIETWKEGKDIYEYFEKQIDIQKWKEEEYPDVLDVFYEILSRLYA 425

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               + L    +  E                +  + + +A+      + L D  S ++  
Sbjct: 426 SQGKTHLLSYKNYFEGNLGRNLYQLLYRS--LDSIYIKSAQSFSEEKIELRDWHSLMYER 483

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K  K+   +  L+D     +    S         L    ++ +        Y  +     
Sbjct: 484 KKEKQAIFL-DLDDKSLPKLTKTISFLTEVQKQQLDCQTREESILVEKYRFYQAVYSQKR 542

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            + + + S   N+  S+    +              K     S+ +       W+    E
Sbjct: 543 VVFLVQKSEEKNKTLSSFVEEFLWKQGKKIEKSPYSKAFFLQSLRESFSSEVSWTKEFEE 602

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
              L  ++  ++L+ + K+    +          Y      +   G+   E L       
Sbjct: 603 GKALALKKENEELLKDGKLSLGAYDWRDLKTCSKYFYFHKILGNSGR--AEELSFGLSPR 660

Query: 781 NRGLIIHKLLQVIFT---------LPEHKRKNFITSYCTKNAKLWPAK------------ 819
             G++ H+ L+ I                    +  Y  +  K    K            
Sbjct: 661 LLGIVCHRFLERIGREQWKIFLQERQFAISDTTLAQYLEEEFKKDSLKIPPFLKQYLRKI 720

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSE----VSVSGKINCPKKDIIISGRIDQISISQ 875
            Y  ++ +    L+N      +   S  +    +   G     + ++   GR D +  ++
Sbjct: 721 VYPRIIKNTRNFLQNLEKKYRLENISRFQGEKGIEKEGIYRGKELNVSFQGRADLVIEAE 780

Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           Q   I +YKT   +             QL  Y 
Sbjct: 781 QGKEIIDYKTGKTIED-----------QLDFYA 802


>gi|187779217|ref|ZP_02995690.1| hypothetical protein CLOSPO_02812 [Clostridium sporogenes ATCC
           15579]
 gi|187772842|gb|EDU36644.1| hypothetical protein CLOSPO_02812 [Clostridium sporogenes ATCC
           15579]
          Length = 745

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 85/274 (31%), Gaps = 45/274 (16%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
           K II +   K   DL +  K   +    +    N     +S              Y   K
Sbjct: 440 KAIINKVEEKTKFDLMDCYKSFYENLEGLLKMANIKYDNESIREI--------KRYTLEK 491

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            +   +++ED I     L  K  V    +    +E+ +++IDE QD + +Q+E+   L  
Sbjct: 492 LRAKKINYEDQIAL---LFIKGAVGDIPKT---EEVKYVIIDEAQDYAPLQYEIFNQLF- 544

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSI--YSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                     +      +GD  QSI  Y   G+    V   K              S I 
Sbjct: 545 ----------NKANKTILGDISQSINPYMNVGSYNNVVNILKSE----------DTSTIN 584

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD 319
           L  S+RST +I     K+ +         E +   ++         G +   +      +
Sbjct: 585 LTKSYRSTMEITKFSRKILNK--------EINDEYVKRSGDWPSLTGFLDEKDINKRIVE 636

Query: 320 SQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                + +   S          A  +   +   I
Sbjct: 637 EVKVYKCDGHNSIGIITKNIDEAQTVYNYLRDRI 670


>gi|300856977|ref|YP_003781961.1| putative ATP-dependent DNA helicase [Clostridium ljungdahlii DSM
           13528]
 gi|300437092|gb|ADK16859.1| predicted ATP-dependent DNA helicase [Clostridium ljungdahlii DSM
           13528]
          Length = 709

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 29/130 (22%)

Query: 149 FEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           ++DL  I+     L+          +   E+ HI+IDE QD S +Q+ VI  LT      
Sbjct: 473 YDDLAPILYLKIKLEG--------LRYRDEVRHIVIDEAQDYSPLQFRVIYELT------ 518

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
                  ++   VGD  Q I  F    P          +    +   +     L  S+RS
Sbjct: 519 -----KCKSFTIVGDTNQKI-IFSKETPAV-----EKLENILPD--LEIKRFSLNKSYRS 565

Query: 267 TADILTVVDK 276
           T +I+   +K
Sbjct: 566 TNEIIDYANK 575


>gi|226947991|ref|YP_002803082.1| hypothetical protein CLM_0852 [Clostridium botulinum A2 str. Kyoto]
 gi|226841132|gb|ACO83798.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 752

 Score = 61.5 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 31/183 (16%)

Query: 150 EDLIINTNDLLK----KRDVSAWIRYKID--------QEINHILIDEVQDTSLIQWEVIR 197
           +++   T ++L+      +    + Y            EI +++IDE QD + +Q+E+  
Sbjct: 480 DEIKNYTLEILRIGKLNYEDQPPLLYLKGALGDLPKTSEIKYVIIDEAQDYTPLQYEIFS 539

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L            +   +  +GD  QSI  F   +         +  K  T       I
Sbjct: 540 QLF-----------NHANMTILGDLHQSINPFM--KLGDYGNISNVFPKDNT------CI 580

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
           I L  S+RST +I     ++ +     Q +       +   S     +    L +  + +
Sbjct: 581 INLTKSYRSTMEITRFSRRILNKKITDQWVERSGDKPLVLGSPNEEAIKERLLKDIKIYK 640

Query: 318 HDS 320
              
Sbjct: 641 EKG 643


>gi|229820062|ref|YP_002881588.1| ATP-dependent nuclease subunit B-like protein [Beutenbergia
           cavernae DSM 12333]
 gi|229565975|gb|ACQ79826.1| ATP-dependent nuclease subunit B-like protein [Beutenbergia
           cavernae DSM 12333]
          Length = 1043

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 70/736 (9%), Positives = 178/736 (24%), Gaps = 72/736 (9%)

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
           P R+   +R       +A    +++ L    R+  +++  + +        +        
Sbjct: 198 PGRLAHAERELLAALADARPLHAVVALTGVRRADEEVVRGLAEAGVEVPQERADDGARLG 257

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                ++ +          ++V++          +  +          A +L  R+    
Sbjct: 258 PAPPVATYVRHASDADDEVRLVARELVATLETVPAHRAAVLYAGASPYARLLHERLETV- 316

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
              I  +     G       +  L L+R  +       + R L       V  +D   + 
Sbjct: 317 --GIRVNGPGVRGVAERAITRSFLALLRLPQARFARADVFRAL---ADAPVRTSDGSPV- 370

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ-RHETETVYEYIQK 472
               +     + R     E       +           +  +     R       +   +
Sbjct: 371 ---PVARWEQVSRLAAVVEGTDWDARLRDWAARQHRVAETERAADDPRPAVLEAADRDVE 427

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
            A     +   +I  +     +  +     +   +L A+ G    + R   E        
Sbjct: 428 TAEAMRREIGALIADVTRGTELRTWRELAAWALDLLAARYGESDDLRRLPPEEQYAAAAL 487

Query: 533 LNFTLRNEQNSY----SSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            +     E        + L   +  +E                V +  +    GL++ VV
Sbjct: 488 TSALRGLEVLDDVDPVADLSTAVEAIELELERAVPRVGRFGEGVYVGPLGEVAGLDADVV 547

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
           F+V      +  +      +                     +                + 
Sbjct: 548 FVVGLAEDAYPGRLRADALLGADARAATDRLAPARTWIDDRHRALLGAFAAAPRVVATFP 607

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
           R      T       +          +    T +D +             +LT +    +
Sbjct: 608 RGDLRRSTERLPTRWLLPTLRALASDRDLAVTDWDTIRSPHLTGSPSFATELTTTPLPAD 667

Query: 709 WIAYEWSTHHPENTPLEREETIKQLM---------DEQKIPKKLFSPIKNDINEPYILNP 759
              +            +      + +                   + + +      +++P
Sbjct: 668 EQEWRVRAASAGALVPDAVVDAARDLLAGRRGPGLSRYDGDLSASAGLPDHATGTPVVSP 727

Query: 760 STIDTKGKTN---------------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKN- 803
           +++++  +                 L            G ++H  L  +    E    N 
Sbjct: 728 TSLESFAECPHAWFVQRLLRVQPLELPEETVTISPLEIGTLVHACLDRLVRTSEALPANG 787

Query: 804 --------------------FITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
                                               E + LL  + R+L++     A   
Sbjct: 788 APWSAADRARLAEIFDTKAREAARRGATGHARLWEVEREALLRDLGRMLDDDDAWRASRG 847

Query: 844 DSY--SEVSV------SGKINCPKKDIIISGRIDQISISQQNIFIF-EYKTH---HHVPQ 891
            +   SE++         ++  P   + + G  D++  +     I  + KT     +   
Sbjct: 848 ATVLASELTFGTDGAEPVRVAVPGGAVALRGSADKVDRAGDGTLIVTDVKTGSTRRYEEI 907

Query: 892 EIEHIPYTHIAQLSIY 907
           E + + +    QL +Y
Sbjct: 908 EDDPVAHGTRLQLPVY 923


>gi|87161934|ref|YP_493569.1| exonuclease RexB [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194661|ref|YP_499457.1| exonuclease RexB [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|161509166|ref|YP_001574825.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus USA300_TCH1516]
 gi|221142112|ref|ZP_03566605.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus str. JKD6009]
 gi|258452082|ref|ZP_05700098.1| exonuclease RexB [Staphylococcus aureus A5948]
 gi|262049317|ref|ZP_06022191.1| hypothetical protein SAD30_1615 [Staphylococcus aureus D30]
 gi|262052140|ref|ZP_06024348.1| hypothetical protein SA930_1463 [Staphylococcus aureus 930918-3]
 gi|282922246|ref|ZP_06329941.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9765]
 gi|284023893|ref|ZP_06378291.1| exonuclease RexB [Staphylococcus aureus subsp. aureus 132]
 gi|294847954|ref|ZP_06788701.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9754]
 gi|304381480|ref|ZP_07364130.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ATCC BAA-39]
 gi|122539895|sp|Q2FZT6|ADDB_STAA8 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|123486590|sp|Q2FIA9|ADDB_STAA3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|251764614|sp|A8Z072|ADDB_STAAT RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
            AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|87127908|gb|ABD22422.1| exonuclease RexB [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202219|gb|ABD30029.1| exonuclease RexB, putative [Staphylococcus aureus subsp. aureus NCTC
            8325]
 gi|160367975|gb|ABX28946.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus USA300_TCH1516]
 gi|257860297|gb|EEV83129.1| exonuclease RexB [Staphylococcus aureus A5948]
 gi|259159959|gb|EEW44995.1| hypothetical protein SA930_1463 [Staphylococcus aureus 930918-3]
 gi|259162549|gb|EEW47117.1| hypothetical protein SAD30_1615 [Staphylococcus aureus D30]
 gi|269940468|emb|CBI48845.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
            TW20]
 gi|282593536|gb|EFB98530.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9765]
 gi|294824754|gb|EFG41176.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9754]
 gi|302750794|gb|ADL64971.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            str. JKD6008]
 gi|304339843|gb|EFM05787.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            ATCC BAA-39]
 gi|315197319|gb|EFU27657.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus CGS01]
 gi|320141217|gb|EFW33064.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            MRSA131]
 gi|320143274|gb|EFW35064.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            MRSA177]
 gi|329313634|gb|AEB88047.1| ATP-dependent helicase/deoxyribonuclease subunit B [Staphylococcus
            aureus subsp. aureus T0131]
 gi|329726228|gb|EGG62698.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            21189]
          Length = 1158

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 197/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I               F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDL 1020


>gi|323464967|gb|ADX77120.1| exonuclease RexB [Staphylococcus pseudintermedius ED99]
          Length = 1154

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 115/923 (12%), Positives = 247/923 (26%), Gaps = 234/923 (25%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +   T   L     +    +                 T + +  R V+   + K  ++
Sbjct: 146 AHLEPRTRHKLHDIGLIYEKLQARMSS---------EYITAEAMMDRLVTLIPQSKWLKQ 196

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
              I ID   + S  ++++I +L +         ++       GD+  ++  F       
Sbjct: 197 -AEIYIDGFHNFSTQEYQLIEALVKHVKSVTLALTTN------GDQD-ALSMFRK----- 243

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                R  ++ A   GQ    +     +R  A  LTV+++ F           D+     
Sbjct: 244 PSESLRHFEEMAHRVGQPLERLYFHTQYRFKAPSLTVLEQQF-----------DALQPES 292

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
           H ++  G                              ++       + +AR I   +   
Sbjct: 293 HHTADEG--------------------------IRILEAPTTREEVNEVARAILRDVRE- 325

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                       +  + +DI +L R     P   +L   +   Y I    + +  +T H 
Sbjct: 326 ------------KQYRYQDIAILYR----DPSYVYLLDAILPQYDIPYNIDVKKSMTHHP 369

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPL---------------------FNFSED---- 451
            ++ L AL   + ++      + +LK+ +                               
Sbjct: 370 IMEMLRALIEVLRTEWQFEPLMRLLKTNVLTQMMPDSAYLVHLLENFAIERGIYGKRWLD 429

Query: 452 -DIFKICTQRHETETVYEYIQKFANCGISKFQH-----VIKYIHELIHIAQFCSPHDFFT 505
              F++   R       + + +       +          + ++    +AQ  +   F T
Sbjct: 430 PQYFELNQFRKMGIQPNDPLTEEEAATFERVIDLKTKVFNQLLNFEEKLAQGSNAKAFAT 489

Query: 506 LILGAKKG----------RQQFISRFGNEVIDVLDEF-------LNFTLRNEQNSYSSLQ 548
               A +G          R     +  +E  + +D+        L+  +    +   +L 
Sbjct: 490 YFYEAMEGFELPNQLMTQRDMLDEQGQHEAAEEIDQIWNGLIRVLDDVVTVFGDRDMTLT 549

Query: 549 ELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             +  L+     ++ +      ++V I T+  AK      V+++     V          
Sbjct: 550 RFLEVLDVGLNELEFSMIPQTLDQVTIGTMDLAKVDNKKHVYMIGMNDGVMPQAINGSGL 609

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           I  +          +  S + + +            Q +   + Y  MTRA++ +     
Sbjct: 610 ISDNEKKAFETFAGVQLSPTSDIL------------QMDEAFVCYFAMTRATETVTFSYS 657

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
              ++  +  +  + + V   F N + ++       +             HP  T +   
Sbjct: 658 LMDASGAEREKSPFLNDVRQMFRNLDIIQ-------LTHQHARDTLSLIEHPHQTKVHLF 710

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPY-------------------------------- 755
           E  K  +DE  I    F+        P                                 
Sbjct: 711 EAFKTWLDEGLISDTWFTTYAVMAQYPQLNDGLTHLKSALTYNNDTVQLDGELTTQLYGK 770

Query: 756 --ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
               + S  +                  E      Q F+ G I H +L+ I      K +
Sbjct: 771 AIHASVSRFEGYQNCPFKHYTSHGLRLNERTKYQLQNFDLGTIFHDVLKYI----AEKVE 826

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYS-------------- 847
                              + LL  +   LL +      +S    +              
Sbjct: 827 GRFNQLTELQIAQLTNDALETLLPHVQFNLLNSTSYYRYLSQRIGAIVQATLYAMKYQTS 886

Query: 848 -----EVSVSGKINCPKKD----------------IIISGRIDQI--SISQQN--IFIFE 882
                 ++         KD                I I G+ID+I     +    + I +
Sbjct: 887 HSQFKPIAFEKSFRKSPKDASELKAETLYTSQGMPIYIRGQIDRIDTYQKENKSFVNIID 946

Query: 883 YKTHHHVPQEIEHIPYTHIAQLS 905
           YK        ++ +   +  Q+ 
Sbjct: 947 YK-SSSSSASLDLVKVYYGLQMQ 968


>gi|124006749|ref|ZP_01691580.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123987657|gb|EAY27357.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 1030

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 56/570 (9%), Positives = 155/570 (27%), Gaps = 107/570 (18%)

Query: 448 FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI-HELIHIAQFCSPHDFFTL 506
            S+  +          E   +      +     F+ + + +     +     +  +    
Sbjct: 445 LSQAALLDFTETPLFKEDKTDDELARIHQQAPAFRQLFEILFSSWKNALDAIACFEQLME 504

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
           +L  +  + +    +  +  ++L++   F     +  + S+      L Q     K A  
Sbjct: 505 LLNFETNQFEIK--YAEQFREILNDLKFFIRT--RRGFISIHTFKIFLYQAFREAKVAFD 560

Query: 567 ANHN-EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
           +  +  ++++++   + ++   V L+     +          I   ++   G+P ++ Q 
Sbjct: 561 SEKSTSLQVLSLVETRNIDFDNVILLSVNETILPKGKKSNSFIPFDISQSYGLPTYVDQE 620

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
              +                      Y  + RA    I+    + +       R    + 
Sbjct: 621 AMLSYH-------------------FYRLLQRAKKVAILHVSPSDTYGGYEKSRLLLQLQ 661

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE-ETIKQLMDEQKIPKKLF 744
           +D    +  +K         K +    +          +++  +  K+ +    I   + 
Sbjct: 662 HDLSQYNPEIKVKNQVGRFRKSDEYEEQGLVIQKNTQVMDKLMQKFKEGLSPWHINAFIS 721

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--------FTL 796
             +K   N+   +  S +                    G I+H++L+ I          +
Sbjct: 722 CSLKYYFNQIAEIGNSIVVE----------ESLGADKFGSIVHEILEDIYRELSAKHKEI 771

Query: 797 PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM-------SCDSYSE- 848
                +  +     +  + +  +EY N L +    +    + T               E 
Sbjct: 772 EAPHIEAELPEVQNRVNEKFLQEEYANYLQTGENFI-TKKLATNFVTNFLKNQAKEAKEN 830

Query: 849 -VSVS----------------------GKINCPKKDII----ISGRIDQISISQQNIFIF 881
                                       +        +    I G  D+I    + + I 
Sbjct: 831 GAPFEILSLENKNRWTDPQEAFSPVLSAQFEAEVNGQVTEVKIKGITDRIDKIGEKVRII 890

Query: 882 EYKTH-------HHVPQEIEHI----PYTHIAQLSIYEKILK--------------DSYP 916
           +YKT             ++E +        + QL +Y+ IL                   
Sbjct: 891 DYKTGLVEKKDVKLSNDDLERLVSDTKADKVRQLWLYKYILSKLIIEKGEYYIGEHKLTE 950

Query: 917 NKSLVCLLIYVSEPK--VFIIPQNKLNKAF 944
            + +   +  +   K  +  +  +  ++  
Sbjct: 951 KEPISAGIYSLRNLKEGLLELKSSVKDQEL 980


>gi|119584882|gb|EAW64478.1| hCG2042887, isoform CRA_b [Homo sapiens]
          Length = 1527

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 25/280 (8%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                  +    +    +   G+ +   KA  ++       +   F +  +    +    +
Sbjct: 1136 AQEESTIPSWQEDEEEAEVDGDYSEEDKAVEMRTGDSDPRVYVTFEVFKNEIWPKMTKGR 1195

Query: 82   KNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
                     +EI        E L        +   +    K   +     +    L + Y
Sbjct: 1196 TAYNPALIWKEIKSFLKGSFEALSCPHGRLTEEVYKKLGRKRCPNFKEDRSEIYSLFSLY 1255

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            ++ + +    D ED++ N +  L K  V  W        I+ +  DE+QD +  +  ++ 
Sbjct: 1256 QQIRSQKGYFDEEDVLYNISRRLSKLRVLPW-------SIHELYGDEIQDFTQAELALLM 1308

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRATNAGQ 253
                         + P ++F  GD  QSI    +F  ++ +       R    +     +
Sbjct: 1309 KCI----------NDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASRNTIDKQCAVRK 1358

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
               I +L  ++RS + IL +   V  + +     S D   
Sbjct: 1359 PKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLP 1398


>gi|110798811|ref|YP_695033.1| putative helicase [Clostridium perfringens ATCC 13124]
 gi|110673458|gb|ABG82445.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124]
          Length = 706

 Score = 61.5 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 28/171 (16%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              +I       +    +  S      +   +   KK+  + D   ++     L      
Sbjct: 430 RIREIVKEVMDSRAKLDSWISREDVLDIYDRFNGNKKEYTINDLAPILYLAIKL------ 483

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
                 K  ++  H++IDE QD S +Q++V+R LT             +    VGD  Q 
Sbjct: 484 ---EGKKATKDYRHVVIDEAQDYSPLQFKVVRELTG-----------TKYFTVVGDVNQR 529

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           +  +  ++   ++   +I      +      I  L  S+RST +I+   +K
Sbjct: 530 LIKY--SDLAPMMELGKIFDDVNPD------IYNLNKSYRSTYEIMEYANK 572


>gi|322385778|ref|ZP_08059422.1| exonuclease RexB [Streptococcus cristatus ATCC 51100]
 gi|321270516|gb|EFX53432.1| exonuclease RexB [Streptococcus cristatus ATCC 51100]
          Length = 1095

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 69/649 (10%), Positives = 167/649 (25%), Gaps = 107/649 (16%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A +I   +              + KDI +L+    D        + +   Y+I    
Sbjct: 310 EYVAKSIRQRLHDG----------ARYKDIRLLL---GDVEAYQLQLKTIFAQYQIPFYL 356

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICTQRHETET 465
                ++ H  ++ L +L R           + +LK+ L+    ++ +          E 
Sbjct: 357 GRSEPMSQHPLVQFLESLERLKRYNFQTEDLLNLLKTGLYGSLRQEGLDSFEQYLRFAEI 416

Query: 466 VYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEV 525
                         + +  +K ++ +           F +          +F S      
Sbjct: 417 KGAAKLGRDFTINRQEKFDLKRLNVMRRSLITPLLDFFKSRSQTVAGLLDKFTSFIKEVR 476

Query: 526 -IDVLDEFLNFTLRNE-QNSYSSLQELISELEQYP----------------------PTI 561
             D L   L    + E +      +     LEQ                           
Sbjct: 477 LDDNLMGLLEGASQQEVERQEEVWKTFCHVLEQLAQVFDGSKLKIDDFLALILSGMLLAK 536

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            R   A  + V + +    + + +P V+ +    +        K  +             
Sbjct: 537 YRVVPATVDVVTVQSYDLIEPMAAPYVYAIGLTQERLPKLAQNKSLLSDEE------RQK 590

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW 681
           + Q+    + +        K  +     LL        + L++     T+  + +     
Sbjct: 591 LNQATGDESELQVASSENLKKNRFAALSLLNSAT----EDLVLSAPVLTNEVEDAMSSYL 646

Query: 682 YDM------VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM- 734
            ++      +       +       T        I         E TP E+      +  
Sbjct: 647 TELEIAPISLPIISKQPQASSDDIGTYRALLARVIDLYQEDIDREWTPEEQTFWAVAIRV 706

Query: 735 ------------------DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN------- 769
                              + +  K           +P  L+ S ++   K         
Sbjct: 707 LRKKLVAEGISIPQISKELKTEPLKSETLQALYPSEQPLRLSASALNEYFKNQYAYFLKY 766

Query: 770 ----LESLLSDNQTFNRGLIIHKLLQVI-------FTLPEHKRKNFITSYCTKNAKLWPA 818
                E         + G+ +H++ + +              R    TS+  +   ++  
Sbjct: 767 VLRIQEEWTIQPDARSHGIFLHRIFEKVMQEHLEQDFDTRLHRAMEETSWEAEFESIYGE 826

Query: 819 KEYKNLLLSIT--------RLLENPMMTTAMSCDS---YSEVSVSGKINCPKKDIIISGR 867
                    +         R+L        +  ++     +      +    + + +SG+
Sbjct: 827 NGETQFARRLLLDTAQATGRILAQSDGLEVIGEETDFGRGDRPF--LLLDNGRALQVSGK 884

Query: 868 IDQISI--SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
           +D+I       ++ + +YK+        E       +QL  Y   +++ 
Sbjct: 885 VDRIDRLKETGSLGVVDYKSGDTKF-SFEKFFNGLNSQLPTYLAAIREM 932


>gi|315154169|gb|EFT98185.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
          Length = 271

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 68/213 (31%), Gaps = 37/213 (17%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  +D +    G  +H   +    + E  ++   +   +        K
Sbjct: 38  EAAALAKLKGEWTPENDPKALLVGNYVHSYFES-PEIHEAFKEENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +          +       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIYQGEK------EVIVTGEIGGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y         I++  
Sbjct: 149 FVDIKTTKDMHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQYDK-------IFLPL 201

Query: 928 ---------SEPKVFIIPQNKLNKAFAEISTKI 951
                    SE K+  + + K+     E+   I
Sbjct: 202 IAAVSKQTPSEAKLITLSEEKMIYELEELKENI 234


>gi|168217958|ref|ZP_02643583.1| putative helicase [Clostridium perfringens NCTC 8239]
 gi|182380002|gb|EDT77481.1| putative helicase [Clostridium perfringens NCTC 8239]
          Length = 706

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 28/171 (16%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              +I       +    +  S      +   +   KK+  + D   ++     L      
Sbjct: 430 RIREIVKEVMDSRAKLDSWISREDVLDIYDRFNGNKKEYTINDLAPILYLAIKL------ 483

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
                 K  ++  H++IDE QD S +Q++V+R LT             +    VGD  Q 
Sbjct: 484 ---EGKKATKDYRHVVIDEAQDYSPLQFKVVRELTG-----------TKYFTVVGDVNQR 529

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           +  +  ++   ++   +I             I  L  S+RST +I+   +K
Sbjct: 530 LIKY--SDLAPMMELGKIFDDVNP------EIYNLNKSYRSTYEIMEYANK 572


>gi|153806227|ref|ZP_01958895.1| hypothetical protein BACCAC_00482 [Bacteroides caccae ATCC 43185]
 gi|149130904|gb|EDM22110.1| hypothetical protein BACCAC_00482 [Bacteroides caccae ATCC 43185]
          Length = 953

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 100/846 (11%), Positives = 222/846 (26%), Gaps = 137/846 (16%)

Query: 148 DFEDL---IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
           DF+D+   +++ + L                     L+D+ +     Q E I+    +F 
Sbjct: 105 DFDDVDKNLVDADKLFSNLQDLKS------------LMDDYEFLDKEQEEAIQQFFRNFS 152

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
           + + T    + +               +   ++       +K  T  G  +  +     +
Sbjct: 153 IERRTELKEKFI---------------SLWDKLGTIYHHYRKNLTEVGIAYEGML----Y 193

Query: 265 RSTADILT---------------VVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
           R+  + L                V++KV          ++ +     +      Q+   +
Sbjct: 194 RNVIEQLNTDQLKYDKYIFVGFNVLNKVEKEFFRKLQKADKAIFYWDYDIFYTQQIKKHE 253

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESS-----ASILARRIAYTISNMIGTDTIFS 364
             E +        N    S+        +         +  AR +   I     +D   +
Sbjct: 254 AGEFINRNLKDFPNELPASYFDSLKKPKKIRYISASTENAQARFLPEWIRTTFSSD---N 310

Query: 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMAL 424
             +  V+   + L+L         I    + +       +     +   +          
Sbjct: 311 EKENAVVLCNETLLLPVLHS----IPEEVKNVNITMGFPLAQTPVYSFINAAMELQTNGY 366

Query: 425 GRFILSQEDDLSFVCMLKSPL-FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            RF   +    +   +LK P     S                     +   +  ++    
Sbjct: 367 -RFDTGRFTYETVSAILKHPYTRQLSTKADIIERELTKTNRFYPLPSELKQDEFLANLFT 425

Query: 484 VIKYIHELIHIAQFC--SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE- 540
               I EL              +           Q       +    ++   +     E 
Sbjct: 426 PRNGIKELCDYLIGLIKDISTLYRKEGEYNDIFNQLYRESLFQSFLKINRLYSLIESGEL 485

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
                +L+ LIS++                 +++M V   + L+   + ++         
Sbjct: 486 NIQPHTLKRLISKVLTSSNIPFH--GEPAIGMQVMGVLETRNLDFRNLVMLSLNEGQLPK 543

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
              +   I  +L    G+     ++              +   + E   LLY        
Sbjct: 544 TGGESSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAENITLLY-------- 589

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                   NTS++  +       M+         + +  L    +       E       
Sbjct: 590 --------NTSSDGLNRGEESRFMLQLLVEGPHEITREYLEAGQSPQSTPKIEIPKTQKI 641

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
                  E +  + D       + SP   +      L        G    E + ++  + 
Sbjct: 642 L------ERLYHIYDVTNPKSLILSPSALNTYLDCRLRFYFRYIAGLKTPEEVSAEIDSA 695

Query: 781 NRGLIIHK-------------------LLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
             G I H+                    L+ +       +     ++  +  K+ P ++ 
Sbjct: 696 LFGTIFHRSAELAYTELTSNGQMIQKEDLERLLRNDVKLQGYVDQAFKEEFFKVKPEEKP 755

Query: 822 K---------NLLLSITRLLENPMMTTAMSCDSYSEVSVS--GKINCPKKDIIIS--GRI 868
           +          ++ S  R L    +  A       E +VS    I        +   G I
Sbjct: 756 EYNGVQLINSKVITSYLRQLLRNDLQYAPFEMVAMEQAVSEKITIQTDLGPFTVRLGGTI 815

Query: 869 DQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSIYEKILKDSYPNKSL 920
           D++   +  + I +YKT  +   P  IE +         +I Q  +Y  I+      K +
Sbjct: 816 DRMDAKESTLRIVDYKTGGNPKIPANIEQLFTPSETRPNYIFQTFLYASIMCRQQTLK-V 874

Query: 921 VCLLIY 926
              L+Y
Sbjct: 875 APALLY 880


>gi|253573461|ref|ZP_04850804.1| ATP-dependent DNA helicase replicase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251846989|gb|EES74994.1| ATP-dependent DNA helicase replicase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 781

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 112/333 (33%), Gaps = 44/333 (13%)

Query: 36  SLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPD 95
           +++    +       +   Q    +  +  +  +      +  +       + I  K   
Sbjct: 401 AIAAFGKSELDQPWVEEQIQLLDAEDYQRAYQRMRHKQHGKSPSFSDYEDEKTILAKM-V 459

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAH-----YEE------AKKKN 144
           + ++LK  +     +R    T +++    + LT+ + ++       +E+       K   
Sbjct: 460 VSDRLKPLRKWVKSLRFVDVT-RLYTQLFSDLTIFREVHQEELPDQWEDICEQTLQKIAG 518

Query: 145 CVLDFEDLI--INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
             L +ED+   +   +LL        + ++ +  I H++IDE QD S  Q   ++ L   
Sbjct: 519 GELFYEDITPFLYLKELL--------LGFRSNTSIRHVIIDEAQDYSPFQLFFLKRLF-- 568

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                        + A+GD  Q+IY+ H +  ++      +         ++  +I L  
Sbjct: 569 ---------PRAKMTALGDLNQAIYA-HASVLQQSSVFSDLYGA------EESELITLEQ 612

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           S+RST  I+    ++    E     + +      H    +     +    + +       
Sbjct: 613 SYRSTRQIVEFTREMIPGGEAIVPFNREGEMPEVHL---VDDADKLHASLEAMIGQLRAD 669

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             +  +         +++   + A+  A  I  
Sbjct: 670 GYESIAVICKTAEESKQAYDRLSAKLPAKLIKK 702


>gi|110803891|ref|YP_697893.1| helicase [Clostridium perfringens SM101]
 gi|110684392|gb|ABG87762.1| conserved hypothetical protein [Clostridium perfringens SM101]
          Length = 706

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 28/171 (16%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              +I       +    +  S      +   +   KK+  + D   ++     L      
Sbjct: 430 RIREIVKEVMDSRAKLDSWISREDVLDIYDRFNGNKKEYTINDLAPILYLAIKL------ 483

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
                 K  ++  H++IDE QD S +Q++V+R LT             +    VGD  Q 
Sbjct: 484 ---EGKKATKDYRHVVIDEAQDYSPLQFKVVRELTG-----------TKYFTVVGDVNQR 529

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           +  +  ++   ++   +I             I  L  S+RST +I+   +K
Sbjct: 530 LIKY--SDLAPMMELGKIFDDVNP------EIYNLNKSYRSTYEIMEYANK 572


>gi|325914236|ref|ZP_08176586.1| hypothetical protein XVE_0453 [Xanthomonas vesicatoria ATCC 35937]
 gi|325539491|gb|EGD11137.1| hypothetical protein XVE_0453 [Xanthomonas vesicatoria ATCC 35937]
          Length = 692

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 90/284 (31%), Gaps = 40/284 (14%)

Query: 1   LKNRFGLSLNESYELIYKDLWP--LPYFQVSDINKYVSLSMETGNPTILKKAQT----LQ 54
           L     L+  +    +    +   L      ++ + +  + + G    +   +     L 
Sbjct: 264 LHRAVYLARKDEDARVLLSTFSDTLANALRGNLYRLIWNTPKLGERIDVAAMEAIGIRLY 323

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ-DEFIKIRDR 113
            A   +        +S+    +    Q   +         + ++ +   Q D++   RD 
Sbjct: 324 SAEFGKPAFVGRDEISALL--RAAAAQVGGLKANAAFLLSEWEDVVDTWQVDDWETYRDA 381

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
               +  +   A   L   + A  +   K+   +        T ++  K  ++  I  + 
Sbjct: 382 KRLGRKTRLPEAQRALYWQVFAQVQAQLKQAGKI-------TTAEMFAK--LAEAIPKRK 432

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
               ++I++DE QD S+ Q   + ++  +             LF  GD  Q I       
Sbjct: 433 HPVFDYIVVDEAQDISVQQLRFLAAIAGN---------RANALFFAGDLGQRI------- 476

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
                  +     +      +     L +++R++  I +  D++
Sbjct: 477 ------FQTPFSWKHLGVDVRGRSRTLSINYRTSHQIRSQADRL 514


>gi|254467290|ref|ZP_05080701.1| hypothetical protein RBY4I_3903 [Rhodobacterales bacterium Y4I]
 gi|206688198|gb|EDZ48680.1| hypothetical protein RBY4I_3903 [Rhodobacterales bacterium Y4I]
          Length = 650

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 77/544 (14%), Positives = 145/544 (26%), Gaps = 77/544 (14%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              L   ++I      L + +    I   +      ILIDE QDT       ++ L E  
Sbjct: 171 RDALQHTEVIALAAHFLTESETFQNI---VLARYPFILIDESQDT-------MKPLMEAL 220

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
              +  H     L  +GD  Q IY+             R   +R  +  Q        ++
Sbjct: 221 LTFEARHRGRIALGLLGDTMQRIYTDG----------LRDLDQRVGDFSQPAK----QMN 266

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
            RS   I+ + + +    +  Q            + +R  + G         S+   +  
Sbjct: 267 HRSRKRIVDLANSIRRDDDGRQ------------QRAREDKPGGTVRVFLAPSEGTDRAA 314

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
            +  +           +     A +   TI   +    +  +     +   D L     +
Sbjct: 315 FEASARAEMARITGDSAWQKAEAIK-TLTIERHMAAARLGFSELFEPLSKPDKL-----K 368

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
                 T     L     + +V   R          D  A    +           + K 
Sbjct: 369 DGFRDGTLPAMRLFTHRVLPLVTAQRNG--------DAFAAMAVLRDGS-----PLVDKR 415

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
            +          +   R     +    +   +   +    V+                D 
Sbjct: 416 GIREGGGGQATGLDAARAGVAALMTLFKDEPDPSCADVLAVVAEHRLF-------PIPDQ 468

Query: 504 FTLILGAKKGRQQFISRFGNEVIDVLDEF-LNFTLRNEQNSYSSLQELISELEQYPPTIK 562
               L       Q ++    E+  + DE  L     +     +  +     LE     + 
Sbjct: 469 LRACLPDDNPVAQDMADILAELDPLFDELDLTTPEGSPPTETTITEAWTQALEAPFSQVA 528

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           R  +   +     T    KGLE P V ++                   +          +
Sbjct: 529 RYLAYVEDRSPYGTHQGVKGLEFPRVMVI--------------ADDAHTRFKGLASYETL 574

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
              K           + +++T E   RLLYV  TRA + L +  +S T +  +    +  
Sbjct: 575 FGVKPLGPAAQKKADNGEETTIERTRRLLYVTCTRAEESLALVLYSETPDTIRRFLISNG 634

Query: 683 DMVY 686
            M  
Sbjct: 635 WMAE 638


>gi|60681670|ref|YP_211814.1| hypothetical protein BF2191 [Bacteroides fragilis NCTC 9343]
 gi|60493104|emb|CAH07885.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 957

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 63/500 (12%), Positives = 141/500 (28%), Gaps = 76/500 (15%)

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +          +  + +  YI EL+         +  +  +  +  R+     F      
Sbjct: 420 DKFLDILFTPRNGIRELCVYITELLKEVSVLYRQEQESDDIFNQLYRESLFKSFTL---- 475

Query: 528 VLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            ++  LN    NE Q    +L+ L++++                 ++IM V   + L+  
Sbjct: 476 -VNRLLNLIDNNELQVRIETLKRLLNKILNAANIPFH--GEPAIGMQIMGVLETRNLDFR 532

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            + L+            +   I  +L    G+     ++              +   + E
Sbjct: 533 NLLLLSLNEGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAE 586

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              L+Y                NTS++  +       M+         + +  L    + 
Sbjct: 587 NITLMY----------------NTSSDGLNRGEWSRFMLQFLIEWPHEISREYLEAGQSP 630

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                   +        L R     +  D       + SP   +      L         
Sbjct: 631 QNSKEIRITKTPEIIDRLYRTYDFSRNPD-----ALILSPSALNTYLDCRLKFYFRYVAR 685

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE--YKNL 824
               + + ++  +   G I H+  Q+++      +++       +  +     +      
Sbjct: 686 LKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTANKRDVHKEDLERLLRDNIRLQNYVDIA 745

Query: 825 LLSI--------------TRLLENPMMTTAMSCDSYS------------EVSVSGKINCP 858
              I               +L+ + ++T+ +     +            E  V   I   
Sbjct: 746 FKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQLLRNDLQYAPFRMMGMEQEVVEDIRIE 805

Query: 859 KK----DIIISGRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSI 906
                  + I G ID++   +  + I +YKT      P  IE +         +I Q  +
Sbjct: 806 GPVGKLSLRIGGTIDRMDSKEGTLRIVDYKTGGSPKVPANIEQLFTPAEGRPNYIFQTFL 865

Query: 907 YEKILKDSYPNKSLVCLLIY 926
           Y  I+      K +   L+Y
Sbjct: 866 YAAIMARQQALK-VAPSLLY 884


>gi|282865176|ref|ZP_06274229.1| Superfamily I DNA and RNA helicase-like protein [Streptomyces sp.
           ACTE]
 gi|282560099|gb|EFB65648.1| Superfamily I DNA and RNA helicase-like protein [Streptomyces sp.
           ACTE]
          Length = 792

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 102/346 (29%), Gaps = 43/346 (12%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
              P  +   ++   + S   G  T  + A  L+ +       E        FLT     
Sbjct: 408 LLRPRARKLLLDALWNKSSGRGRYTDPELAAELRSSFDEDVSTELP------FLTFLDAW 461

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK-----YLNA 135
              +  + +     D + +L +     +   +     +  K   A    A       L  
Sbjct: 462 WPELTPRRVLAAMADER-RLGRWARRILNQGEVRRLARSLKRLDADGKGALSVHDVALLD 520

Query: 136 HYEEAK------KKNCVLDFEDLIINTNDLL----KKRDVSAWIRYKIDQEINHILIDEV 185
                       K+   LD  D +    +L+    + +   A        E  H+++DE 
Sbjct: 521 ELHTLLGTPHRPKRKRELDPLDQLTGLEELMPQREETQRERAERLAAERTEYAHVIVDEA 580

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +QW ++                  T   VGD  QS      ++P           
Sbjct: 581 QDLTPMQWRMV-----------GRRGRHATWTVVGDPAQS----SWSDPDEAAA-----A 620

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED-STTTIRHRSSRIGQ 304
           +      +      L +++R+ A+I  +  KV ++            +T +R R + +  
Sbjct: 621 RDEALGSRPRRRFTLTVNYRNPAEIAELAAKVLALAMPGMESPAAVRSTGVRPRFATVRD 680

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIA 350
               +   +   +  ++ +       +    +        L  R+ 
Sbjct: 681 GDLAETVREEARRLLAEVDGTVGVVVAMDRRVEARGWLDELGERVV 726


>gi|258543654|ref|YP_003189087.1| nuclease [Acetobacter pasteurianus IFO 3283-01]
 gi|256634732|dbj|BAI00708.1| nuclease [Acetobacter pasteurianus IFO 3283-01]
 gi|256637788|dbj|BAI03757.1| nuclease [Acetobacter pasteurianus IFO 3283-03]
 gi|256640842|dbj|BAI06804.1| nuclease [Acetobacter pasteurianus IFO 3283-07]
 gi|256643897|dbj|BAI09852.1| nuclease [Acetobacter pasteurianus IFO 3283-22]
 gi|256646952|dbj|BAI12900.1| nuclease [Acetobacter pasteurianus IFO 3283-26]
 gi|256650005|dbj|BAI15946.1| nuclease [Acetobacter pasteurianus IFO 3283-32]
 gi|256652995|dbj|BAI18929.1| nuclease [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656049|dbj|BAI21976.1| nuclease [Acetobacter pasteurianus IFO 3283-12]
          Length = 1029

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/368 (12%), Positives = 92/368 (25%), Gaps = 54/368 (14%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           E+          + H  V I  +  ++   +  V L      V+           P ++ 
Sbjct: 590 ERVAMRRGGDPKSLHPRVLIWGLFESRLQTAETVILGGLSEGVWP----------PVVDA 639

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
            P +   + Q     +    + +              +     A+  +I+          
Sbjct: 640 GPWMSRPMRQRMGLPSPEQAVGQAGHD----------FFASAAAAGTVILSSARRREGAP 689

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
               R    +          +        +NK +      +       P+       + +
Sbjct: 690 VVPARWLTRLDAFLAGRKGHIPNHPALLWLNKLDQPVGP-AIPVAPPQPMPPVALRPRRL 748

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
              +I   +  P          L            L  L       + G+I+HK L+   
Sbjct: 749 SVTEIETWIRDPYAIYAKHILRL----------EVLPELEEAADASDYGMIVHKALERWV 798

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS------CDSYSE 848
                   +           L+     +++L    R    P +T              +E
Sbjct: 799 KAYGVTWPDNAEKKL---CDLFSESLQEHVLRPALRAWWAPRLTRIAQWVVQAEEKRRNE 855

Query: 849 VSVSGKINCPKKDII-----------ISGRIDQISISQQNIFIF-EYKTHHHVPQEIEHI 896
             V   I    +  +           I GR D+I ++     I  +YKT        + +
Sbjct: 856 HGVPRAILTEIRGRVSIMDAPGGKFDIVGRADRIELNADGHVIVQDYKTGTLP--SAKDV 913

Query: 897 PYTHIAQL 904
                 QL
Sbjct: 914 LAGWSPQL 921


>gi|138894262|ref|YP_001124715.1| ATP-dependent deoxyribonuclease subunit B [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248139|ref|ZP_03146841.1| ATP-dependent nuclease subunit B [Geobacillus sp. G11MC16]
 gi|134265775|gb|ABO65970.1| ATP-dependent deoxyribonuclease, subunit B [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212923|gb|EDY07680.1| ATP-dependent nuclease subunit B [Geobacillus sp. G11MC16]
          Length = 1172

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 96/925 (10%), Positives = 239/925 (25%), Gaps = 194/925 (20%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                   + +  +     +     L+    +    E +   +  LD ED +     LL 
Sbjct: 143 DELRRHAGVLESGSGQPGRRLLADKLSDVALVYEELERSLLGH-YLDSEDYL----RLLV 197

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           +    +   +  D     I ID     S  ++ VI  L               T+    D
Sbjct: 198 EHIPRSSYLHGAD-----IYIDGFHHFSPQEYMVIEQLL--------HRCRRVTVCLTAD 244

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
                                          +         ++R   + L + + +    
Sbjct: 245 R----------------------PYDVGMPDELDLFYLPAQTYRQLRE-LALANDIM--I 279

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E+   LS +     +  +    Q     L                         L + ++
Sbjct: 280 ESPVVLSVNRRHQDKALAHLEEQFHRRPLLPYEAETDAIC--------------LYEAAN 325

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  +A  I  ++  +           + +DI +++R    T     L + +  D+ 
Sbjct: 326 RRAEIEAVAREIIRLVRDE---------GARYRDIALIIR---QTEAYRDLVKTVFFDFD 373

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I    +++  +  H  I+ + A    ++++    +    +K+ L    + D+        
Sbjct: 374 IPYFMDEKEPMHYHPLIELVRAALETVVTRWRYEAVFRAVKTDLLFPVDGDLAMWREAAD 433

Query: 462 ETETV---------------------YEYIQKFANCGISKFQHVIKYIHELIHI------ 494
           + E                       Y+ +         + +     ++E          
Sbjct: 434 KLENYVLAHGVKGEKWTSDERWTYRRYQALDGLNVPQTDEERQFEDKLNEWREALAAPLR 493

Query: 495 ---------AQFCSPHDFFTLILGAKKGRQQFI--------------SRFGNEVIDVLDE 531
                    A          L L   +  ++                +R   +  + + +
Sbjct: 494 RLERRLRRAADGRGLCTALYLFLEELQIPKKLEQMSAQAEADGRLVEARQHEQAWNAVVD 553

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFL 590
            L+  +         L E    +E     ++ A      ++V +  +  ++ ++    F+
Sbjct: 554 LLDQYVEMLGAEPLPLAEFAKIIEAGLDRLEFALVPPAIDQVIVAQLDRSRLIDVKYAFI 613

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     V   K   +  +     +             R  +  D             +R 
Sbjct: 614 IGVNDGVIPAKVKDEGLVAEVEREQLRELGVALAPGGREQLFYDPFFVYLA--LACPSRR 671

Query: 651 LYVGMTRA---------------------SDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
           LYV    A                        + +C +      ++  +           
Sbjct: 672 LYVTYPLADGEGKALMPSPLIKQLVQLFPRVSVHLCGNDPFDAPEEKPETFVTVPRATQT 731

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
           +   +++  K    I+   W  Y     HPE     R E     +             + 
Sbjct: 732 YLISQLRAWKRNYGIDPLWWDVYNVLISHPEWR--ARVEQAVSGLFYTNQAVLKREWSRR 789

Query: 750 DINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
              +    + S ++   K              E  +   +  + G + H  ++ I     
Sbjct: 790 LYGKKIQASVSRMEQFQKCPYAHFASHGLRLKERNVFRLEAPDVGQLFHAAIKQIADRVR 849

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLEN---------------PMMTTAMS 842
            +  ++         +   A+  + +   I + +L +                  T  +S
Sbjct: 850 EQHLDW-KQLSRSECERLSAEAVERIAPLIQQQVLSSSNRYEYMKRKLKNVVARTTHVLS 908

Query: 843 CDSYS----EVSVSG-----------KINCPKKDII-ISGRIDQISISQQN----IFIFE 882
             + +     V               +       ++ + GRID++  ++ +    + I +
Sbjct: 909 EHARASGFAPVGFELSFGPGGDLPPLRFQLRDGTVMELVGRIDRVDKAESSQGVLLRIID 968

Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIY 907
           YK+      ++  + Y    Q+  Y
Sbjct: 969 YKSSAKT-LDLTEVYYGLALQMFTY 992


>gi|159901725|ref|YP_001547971.1| superfamily I DNA/RNA helicase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894764|gb|ABX07843.1| Superfamily I DNA and RNA helicase-like [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 722

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 53/152 (34%), Gaps = 24/152 (15%)

Query: 153 IINTNDLLKKRDVSAW-----IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           +     + ++     +     +  +   + +HI +DE Q  S +Q+ ++           
Sbjct: 372 LRRQYRIFQEDLALIYYIVLLLAEQSPPQFDHIFLDEAQSMSPLQFHLLTL--------- 422

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
             H++  ++  VGD  Q+I  + G       +              ++    L  ++RS+
Sbjct: 423 --HATNGSMTIVGDVMQNITPWAG--ITSWQQLTDQLPA------TRYQYETLAQNYRSS 472

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
            +I+ + + +     +    +  S       +
Sbjct: 473 YEIVQLANHILLTTHHVGNSAAISHHYHPLEA 504


>gi|119584881|gb|EAW64477.1| hCG2042887, isoform CRA_a [Homo sapiens]
          Length = 1494

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 25/280 (8%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                  +    +    +   G+ +   KA  ++       +   F +  +    +    +
Sbjct: 1136 AQEESTIPSWQEDEEEAEVDGDYSEEDKAVEMRTGDSDPRVYVTFEVFKNEIWPKMTKGR 1195

Query: 82   KNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
                     +EI        E L        +   +    K   +     +    L + Y
Sbjct: 1196 TAYNPALIWKEIKSFLKGSFEALSCPHGRLTEEVYKKLGRKRCPNFKEDRSEIYSLFSLY 1255

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            ++ + +    D ED++ N +  L K  V  W        I+ +  DE+QD +  +  ++ 
Sbjct: 1256 QQIRSQKGYFDEEDVLYNISRRLSKLRVLPW-------SIHELYGDEIQDFTQAELALLM 1308

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRATNAGQ 253
                         + P ++F  GD  QSI    +F  ++ +       R    +     +
Sbjct: 1309 KCI----------NDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASRNTIDKQCAVRK 1358

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
               I +L  ++RS + IL +   V  + +     S D   
Sbjct: 1359 PKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLP 1398


>gi|253574627|ref|ZP_04851967.1| ATP-dependent nuclease subunit B [Paenibacillus sp. oral taxon 786
            str. D14]
 gi|251845673|gb|EES73681.1| ATP-dependent nuclease subunit B [Paenibacillus sp. oral taxon 786
            str. D14]
          Length = 1180

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 66/688 (9%), Positives = 169/688 (24%), Gaps = 153/688 (22%)

Query: 358  GTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLA 417
                +    ++  ++ +D+ +LVR   D      L       Y I    + +  +  H  
Sbjct: 334  AAREMVRLAREEGVRWRDMALLVRNLGD---YEELLAPTMEAYGIPYFLDQKASMLYHPM 390

Query: 418  IKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCG 477
            I+ + A    +L           +KS      +  + +      E   +   IQ +    
Sbjct: 391  IEFIRAALDVVLGFWRYEDVFRCVKSEFLLPLDGSLTREHMDVLENYALASGIQGYRWFD 450

Query: 478  ISKFQHV--------------------IKYIHELIHIA-------------------QFC 498
               ++                      ++ +                             
Sbjct: 451  GRPWKSAPSLSLEQEDQTAASVKAMEQLQLLERCRAAVAGPLSAFEKEIRKAKNAADMCA 510

Query: 499  SPHDFFTLILGAKKG----RQQFISRFGNEVIDV------LDEFLNFTLRNEQNSYSSLQ 548
            +       +  A++      +        + ++       + + L+  +    +    L+
Sbjct: 511  AVFHLLERVEAAQRLDVLAHRMVREGKPRQAMEHRQLWSAVLDVLDQIVEMMGDEPLELE 570

Query: 549  ELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
                 LE     +K +      ++V I +    +  +   +FL+     +      ++  
Sbjct: 571  LFAGVLETGLKELKVSLVPPSLDQVLIGSTERTRSGQVKHLFLLGINEGIMPANLQEEGV 630

Query: 608  IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
            +                 + R   +   +         +   L+Y  ++ AS  L +   
Sbjct: 631  LSEQE-------------RERLAELGLELAPGLARKLLDERFLIYEALSGASRSLWLSYP 677

Query: 668  SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK--------------------- 706
            +                V   F        +      ++                     
Sbjct: 678  AADGEGGALLPSEVIRHVKRIFPGLTERPLLLTPGPASRSADPMASQLEFVSRPGPALNA 737

Query: 707  -----------DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE-- 753
                       +      W       T  E E    +L+       ++            
Sbjct: 738  LIGQLRLWKAGESISPLWWRVLEWYKTRPEWESKAARLLTSLDYRNRVRGLTPATSRRLY 797

Query: 754  --PYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIF------ 794
                  + S ++                  E  L   Q  + G + H  L  +       
Sbjct: 798  GKRLRTSVSRMEQFSACPFAHFASHGLKLKERQLYRLQAPDIGQLFHAALSQMAITFKAQ 857

Query: 795  -----TLPEHKRKNFITSYCTKNAK------LWPAKEYKNLLLSITRLLENPMMTTAMSC 843
                 +L   +      S   + A       L  +K Y  +   +  ++    +   +  
Sbjct: 858  NRSWGSLTPEEAIQAANSAVDELAPKLQGEILLSSKRYGYISRKLKAIVGRASL--ILGE 915

Query: 844  DSYS--------EVSV-------SGKINCPKKDII-ISGRIDQISISQQN----IFIFEY 883
             +          E+               P   ++ I GRID++ +++      + + +Y
Sbjct: 916  QARRGSFEPVGQELDFGPGRPLPPLTFELPNGCVMEIVGRIDRVDMAEGEQGLLLRVIDY 975

Query: 884  KTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            K+     + +  + Y    Q+  Y  +L
Sbjct: 976  KSSQTDLK-LHEVYYGLSLQMLTYLDVL 1002


>gi|212716230|ref|ZP_03324358.1| hypothetical protein BIFCAT_01146 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660742|gb|EEB21317.1| hypothetical protein BIFCAT_01146 [Bifidobacterium catenulatum DSM
           16992]
          Length = 1354

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/381 (13%), Positives = 105/381 (27%), Gaps = 54/381 (14%)

Query: 62  IEERFSLLSSFFLTQKFTPQKNIITQEINK--KSPDLKEKLKKSQDEFIKIRDRFNTYKM 119
               +S L +   T  F  Q   +   +N+    P+L+  L           D       
Sbjct: 134 AVSEWSGLVADDSTDAFANQLRDMLARMNEIGAKPELENMLIARAASRNGELDARR---- 189

Query: 120 FKSTLASLTLAKYLNAHYEEAKKKNCV----LDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
            +       LA  L   Y  A +        LD   L+I+  + +     +         
Sbjct: 190 -ERLRTQWRLAFALREEYNAAIRAAYSGEYRLDASQLMIDATEAVSDIRDADIP------ 242

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             N +++D+ QD +L  + ++ +L          H+    L  VG+  +++ +F G+ P+
Sbjct: 243 --NMLIVDDFQDATLAGFALLEAL----------HNRGTRLLLVGNPDEAVQTFRGSYPE 290

Query: 236 -RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA----QGLSED 290
                 +     R       ++  E          I    ++     +        +S  
Sbjct: 291 YLFNEAQSRMGARLERIENLYAACEND----GAQTIRNASNRQSVHDDYRTLVATRVSLS 346

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA--SILARR 348
             +T         + G ++     +                   S+        S     
Sbjct: 347 IASTEPTDVPLPERPGKMRNIPGAMPIEALPSGNTDACVMPADGSVETALYRSSSEELDD 406

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           + + I              +R  +  D+ V+              R       + V  + 
Sbjct: 407 VVWKIKT---------EHLQRSREWNDMAVITHDNATVRAFGERLRAD----GVPVRYSS 453

Query: 409 RFI-LTDHLAIKDLMALGRFI 428
               L D   ++ L AL    
Sbjct: 454 VTRPLKDEPFVQGLFALIELA 474



 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 60/623 (9%), Positives = 144/623 (23%), Gaps = 94/623 (15%)

Query: 264  FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG---TVQLWEQVVSQHDS 320
            +RS+++ L  V          +    +    I H ++ +   G            S    
Sbjct: 397  YRSSSEELDDVVWKIKTEHLQRSREWNDMAVITHDNATVRAFGERLRADGVPVRYSSVTR 456

Query: 321  QCNPQQESWTSYFDSLPQESSASILAR----------RIAYTISNMIGTDTIFSNG-KKR 369
                +      +      E     +A            I   +++++ +  I   G ++ 
Sbjct: 457  PLKDEPFVQGLFALIELAELKRRTIAASGMDPQAAGSYIRSRVASIMASPLITVGGDRQH 516

Query: 370  VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL 429
              +   +  +         +  +    +   + S              ++   +L R + 
Sbjct: 517  EGRPARLASVESAMHALASLAEIVGDDEIRAQDSANMA-------KTDVEQQSSLLRLMA 569

Query: 430  SQEDDLSFVCML--------------KSPLFNFSEDDIFKICTQRHETETVYEYIQKFAN 475
               + ++    +                P+F+     +  +                 ++
Sbjct: 570  DWHEYMAKCHAISDEGQHDGGHDGDQNDPVFDMDALYVLLLEGNTDRVIDTI-ASVTGSD 628

Query: 476  CGISKFQHVIKYIHELIHIAQFC------SPHDFFTLILGAKKGRQQFISRF---GNEVI 526
              +  F  + K + +                 D      G  +  Q+        G    
Sbjct: 629  PQVKAFASLWKVLDKTCEAEHKLVLREPQYVLDCAWRACGKAEIWQRVALEHSAAGRAAN 688

Query: 527  DVLDE---FLNFTLRNEQNSY---SSLQELISELEQYPPTIKRAHSANH--NEVRIMTVH 578
            D LD      N+    E +      +++  + ++                   V + T  
Sbjct: 689  DRLDAAMRLFNYASGGESSGEFAARTIEAFMEQVRSLTIEADSLAHTAPIDQAVTLTTPA 748

Query: 579  TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
             A G    +VFL       + +   +          D    +   +        +     
Sbjct: 749  GAAGRHWNLVFLPSLQQGQWPNLTPRNTLFGGEELAD---VMLHGELSDTVTTSTGKRDA 805

Query: 639  LKKSTQEEYNRLLYVGMTRA----------------SDQLIICKHSNTSNEKKSNQRTWY 682
               +      +   V +TRA                SD L          ++ ++     
Sbjct: 806  QLAAVLASEQKSFLVALTRADECAVMSAVLNDDHVPSDFLYGYVPEWFDRDRDADMERRE 865

Query: 683  DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ---LMDEQKI 739
                 S  +   ++             +A E S         E    +        +   
Sbjct: 866  YAAIGSQGDYAGLESDPRGLIAAARSVLAMEPSNSPKARDAAETLALLASRGIRAADPDC 925

Query: 740  PKKLFSPIKNDINEP-----------YILNPSTIDTKGKTN--------LESLLSDNQTF 780
               +  P+     E              L+PS +D                     +   
Sbjct: 926  WPFVEEPVSLAERETIQDGKTRQSDVVTLSPSAVDNLWACPVCWMLENRFSGPRMGSVAT 985

Query: 781  NRGLIIHKLLQVIFTLPEHKRKN 803
            N G +IH + Q          + 
Sbjct: 986  NFGSLIHTVAQKATEAGLDMPEQ 1008



 Score = 38.0 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 862  IIISGRIDQISISQ-----QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            + ++GRID++         Q + + +YKT      E          QL  Y+  L
Sbjct: 1145 VRLTGRIDRVERRDMADGTQQVRLIDYKTGASPNGEGLFND----LQLVCYQLGL 1195


>gi|197119045|ref|YP_002139472.1| helicase [Geobacter bemidjiensis Bem]
 gi|197088405|gb|ACH39676.1| helicase, putative [Geobacter bemidjiensis Bem]
          Length = 629

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 73/231 (31%), Gaps = 28/231 (12%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
           +  T    S T         L + F       +K+          P +  K  K   +  
Sbjct: 284 RVDTYSAWSLTALAALGVHSLKTSFDDPFGAQKKS-------SMMPAMLAKYVKETAKIE 336

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK--KKNCVLDFEDLIINTNDLLKKRDVS 166
            + D +          A    +        + K   K  VL F D+ I       +R   
Sbjct: 337 PVTDLWRFLMQEYVVAALFPDSGEAFQQEAQRKFEAKERVLSFSDISILLRLAQLRRPAG 396

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             +   ++   +HI++DE QD S +          +        S  R++    DEKQ I
Sbjct: 397 TVVLGALNA-YDHIVVDEAQDLSSL----------ELRTIVAATSPARSITICADEKQQI 445

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            SF  ++    +  +           Q      L +S+R   +I+ +  +V
Sbjct: 446 LSFLDSQGFSSVMAQ--------LHSQGLEKENLTVSYRCPKEIVDLAAQV 488


>gi|253565410|ref|ZP_04842865.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945689|gb|EES86096.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 957

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 63/500 (12%), Positives = 141/500 (28%), Gaps = 76/500 (15%)

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +          +  + +  YI EL+         +  +  +  +  R+     F      
Sbjct: 420 DKFLDILFTPRNGIRELCVYITELLKEVSVLYRQEQESDDIFNQLYRESLFKSFTL---- 475

Query: 528 VLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            ++  LN    NE Q    +L+ L++++                 ++IM V   + L+  
Sbjct: 476 -VNRLLNLIDNNELQVRIETLKRLLNKILNAANIPFH--GEPAIGMQIMGVLETRNLDFR 532

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            + L+            +   I  +L    G+     ++              +   + E
Sbjct: 533 NLLLLSLNEGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAE 586

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              L+Y                NTS++  +       M+         + +  L    + 
Sbjct: 587 NITLMY----------------NTSSDGLNRGEWSRFMLQFLIEWPHEISREYLEAGQSP 630

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                   +        L R     +  D       + SP   +      L         
Sbjct: 631 QNSKEIRITKTPEIIDRLYRTYDFSRNPD-----ALILSPSALNTYLDCRLKFYFRYVAR 685

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE--YKNL 824
               + + ++  +   G I H+  Q+++      +++       +  +     +      
Sbjct: 686 LKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTANKRDVHKEDLERLLRDNIRLQNYVDIA 745

Query: 825 LLSI--------------TRLLENPMMTTAMSCDSYS------------EVSVSGKINCP 858
              I               +L+ + ++T+ +     +            E  V   I   
Sbjct: 746 FKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQLLRNDLQYAPFRMMGMEQEVVEDIRIE 805

Query: 859 KK----DIIISGRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSI 906
                  + I G ID++   +  + I +YKT      P  IE +         +I Q  +
Sbjct: 806 GPVGKLSLRIGGTIDRMDSKEGTLRIVDYKTGGSPKVPANIEQLFTPAEGRPNYIFQTFL 865

Query: 907 YEKILKDSYPNKSLVCLLIY 926
           Y  I+      K +   L+Y
Sbjct: 866 YAAIMARQQALK-VAPSLLY 884


>gi|209515890|ref|ZP_03264752.1| Superfamily I DNA and RNA helicase-like protein [Burkholderia sp.
           H160]
 gi|209503738|gb|EEA03732.1| Superfamily I DNA and RNA helicase-like protein [Burkholderia sp.
           H160]
          Length = 878

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 72/230 (31%), Gaps = 36/230 (15%)

Query: 89  INKKSPDLKEKLK-KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I ++   L+  L    +++++ +        + +               +E        +
Sbjct: 422 IRQEFDYLRSALAPSEREQYLSLEREGRAIPLEERYR---RCVIDGLVAWERKMTDVGAV 478

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           D+   +  T  L K          K++     IL+DE+QD   ++ +++RSL        
Sbjct: 479 DY---LGLTTALYKH-------LEKLEPSFRCILVDEMQDFGSVELKIVRSLV------- 521

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                   +F  GD  QS+               + ++              +  ++R++
Sbjct: 522 --RPDINDIFLSGDTAQSV-------------LTKYHRLSDAGIDVVGRSHSIVKNYRNS 566

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            +IL    ++F   ++    +          ++       +     +  +
Sbjct: 567 REILNAASELFKRNKDMFASAPGIEILDPEFANFSSSPPLLLTAPSLKDE 616


>gi|148260454|ref|YP_001234581.1| hypothetical protein Acry_1454 [Acidiphilium cryptum JF-5]
 gi|146402135|gb|ABQ30662.1| Inactivated superfamily I helicase-like protein [Acidiphilium
           cryptum JF-5]
          Length = 959

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/545 (11%), Positives = 133/545 (24%), Gaps = 62/545 (11%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +            I    +    L D      L  L     S  D +  + +LK PL 
Sbjct: 350 RGLAQRVAAELERLGIRADDSAGERLADTPPAVLLRLLAAAAASDYDAVPLLALLKHPLV 409

Query: 447 NFS-----------EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH-ELIHI 494
           N               D+           +   +    +          +  +   L  +
Sbjct: 410 NAGLPAGRCRALARRLDLLLRAALPGPGFSAMRHAADHSTKPDEALSTFLADLQVSLRPL 469

Query: 495 A---QFCSPHDFFTLILGAKKGRQQ--FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           +      SP      ++ A +      +    G  + + L   +           + L  
Sbjct: 470 SLGPAKTSPAGLLAGLVEAAEAIADELWTGEAGAALSEHLAVQIAALDALPDIEATELVP 529

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L+  +       +      +  V I  +  A+      + L      VF  +      + 
Sbjct: 530 LLDAVLGNARLRRPRARDANPRVAIWGMMEARLQRVDTLVLGGLVEGVFPAEPEPGPWLS 589

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             +     +P    +     + +  LI                     + D++I+     
Sbjct: 590 RPMRRAARLPDDAERIGEAAHDLGILIA--------------------SCDEVILSAPRR 629

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
                    R    +             ++   S  K    ++  +        + R   
Sbjct: 630 RGRAPAVPSRFLARIDL----------ALRGAGSALKQHPASHWSTRLDQPTLRIARPRP 679

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
             +     +      S +   +++PY +    +       L  L ++      G I H  
Sbjct: 680 EPRPPARARPISYSISKVTTLLSDPYAIYAGEV--LDLHTLNPLQAETDAALFGTITHDA 737

Query: 790 LQVIFTLPE-HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE 848
           L+ +   P+     +               K  +  L +   L+    +   +       
Sbjct: 738 LKAVTRTPDWASAPDAAARLAHAFTSELRGKRLRRALEAFW-LVRLERIAEWIVEIERGR 796

Query: 849 VS---------VSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYT 899
           ++         V            + GR D+I    + + I +YKT      +       
Sbjct: 797 LADLGKADDIKVELPGEWRFGHFTVKGRADRIERRGETLAIIDYKTGSPPADKAVEAGSA 856

Query: 900 HIAQL 904
              QL
Sbjct: 857 --PQL 859


>gi|29831668|ref|NP_826302.1| ATP-dependent helicase [Streptomyces avermitilis MA-4680]
 gi|29608784|dbj|BAC72837.1| putative ATP-dependent helicase [Streptomyces avermitilis MA-4680]
          Length = 836

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 87/305 (28%), Gaps = 47/305 (15%)

Query: 3   NRFGLSLNESYELIYKDLWPLPY-------FQVSDINKYVSLSMETGNP-TILKKAQTLQ 54
            R  L   E  + I +                   +   +      G      + A  L+
Sbjct: 434 RRLELEARE-LDRIRETALSGTAPVNLLRPRARKLLLDALWAHSGAGTRHNDPELAAELR 492

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            +       E        F+         +  + +     D +   + ++        R 
Sbjct: 493 SSFDEDVTSE------DSFIGFLDAWWPELTPRGVLAAMADERRLGRWARRILNPGEVRR 546

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAK------KKNCVLDFEDLIINTNDLL----KKRD 164
               + +  L+   +A  +    +         +K   LD  D +    +L+    + + 
Sbjct: 547 VARSLRRDGLSVHDVA--MLDELQAILGQPARPRKRRELDPLDHLTGLEELMPVREESQR 604

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
             A    +   E  H+++DE QD + +QW ++                  T   VGD  Q
Sbjct: 605 ERAERLAQERTEYAHVIVDEAQDLTPMQWRMV-----------GRRGRHATWTVVGDPAQ 653

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
           S      ++P      +           +      L +++R+ A+I  +  KV ++    
Sbjct: 654 S----SWSDPDEAAEARDE-----ALGSRPRRRFTLTVNYRNPAEIAELAAKVLALAMPG 704

Query: 285 QGLSE 289
                
Sbjct: 705 SESPA 709


>gi|328882766|emb|CCA56005.1| putative helicase protein [Streptomyces venezuelae ATCC 10712]
          Length = 779

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 99/337 (29%), Gaps = 40/337 (11%)

Query: 40  ETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEK 99
             G  +  + A  L+ +       E        FL         +  +++     D +  
Sbjct: 416 AAGRHSDPELAAELRSSFDEDVSTE------DAFLGFLDAWWPELTPRQVLDAMADERRL 469

Query: 100 LKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK------KKNCVLDFEDLI 153
            + ++        R     + +  L+   +A  L              KK    D  D +
Sbjct: 470 GRWARRILNPGEVRRLARSLRRRELSVHDVA--LLDELHTLLGAPARPKKRREYDPLDQL 527

Query: 154 INTNDLL----KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
               +L+    + +   A        E  H+++DE QD + +QW ++             
Sbjct: 528 TGLEELMPVREETQRERAERLAAERTEYAHVIVDEAQDLTPMQWRMV-----------GR 576

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                T   VGD  QS      ++P      +           +     EL +++R+ A+
Sbjct: 577 RGRHATWTVVGDPAQS----SWSDPDEAAEARDE-----ALGSRPRRRFELTVNYRNPAE 627

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I  +  KV ++     G              R   V   +    +     S+     E  
Sbjct: 628 IAELAAKVLTLAM--PGKESPRAVRSTGVEPRFVPVEETEGKPDLAETVRSEARLLLERV 685

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                 +   +     AR +A     ++   ++ + G
Sbjct: 686 EGTVGVVVAMNRRQEAARWLAELGDRVVALGSLEAKG 722


>gi|303242233|ref|ZP_07328721.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
 gi|302590221|gb|EFL59981.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
          Length = 771

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 25/133 (18%)

Query: 160 LKKRDVSAWIRYKI-----DQEI--NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           L+  D++  I  K      D++I   HI+IDE QD S  Q+ V+R + +D          
Sbjct: 504 LEIEDIAPIIYLKYLIHGMDEKIPVKHIVIDEGQDFSAFQFYVLRKIVKD---------- 553

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
             +   +GD  QSI+S+ G     +   + +           F  + L  S+R+T +I+ 
Sbjct: 554 -SSFTILGDLCQSIHSYRG-----IRTWQDVVDDVFEGQKCGF--LTLEESYRTTVEIMG 605

Query: 273 VVDKVFSIPENAQ 285
             + V S  ++  
Sbjct: 606 AANTVISKIKDHG 618


>gi|328914083|gb|AEB65679.1| DNA helicase II [Bacillus amyloliquefaciens LL3]
          Length = 279

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 25/134 (18%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              L  + L+I    + +K      I+ ++ Q+   I IDE QD++    ++        
Sbjct: 147 KGGLSHDSLLIFAEKVFEKFP---KIKKRLTQKYQLIFIDEYQDSAPSVLKMFYK----- 198

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
                  ++   L+ +GD+ Q IY             ++  +            I+L  +
Sbjct: 199 ----AGLNTSSKLYFLGDKMQQIYK------NYDGSFEKELKTLNNE-------IKLDTN 241

Query: 264 FRSTADILTVVDKV 277
            RS  DI+++++ +
Sbjct: 242 HRSIPDIVSILNNI 255


>gi|296876207|ref|ZP_06900261.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis ATCC
           15912]
 gi|296432918|gb|EFH18711.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis ATCC
           15912]
          Length = 1088

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 94/878 (10%), Positives = 235/878 (26%), Gaps = 122/878 (13%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    K++ +        + L   Y E +     +DF DL     +LL++ +    +   
Sbjct: 98  KEQDLKVYGALRKDPQFIQQLVQLYHELQTAQ--MDFTDL-----ELLEEAEKREDLLA- 149

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           I + ++ +L+   Q     Q ++   L +              +    D      +   A
Sbjct: 150 IFEAVSEMLV---QHRYESQSKIAFFLNQVEVGHLEEQLKDVAIVV--DGFTRFSAEEEA 204

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
               + R+          + + +       SFR        VD +  + +          
Sbjct: 205 LISLLHRKGVEIVIGVYASEKAYR-----ASFREGNLYQASVDFLLQLAKT------FEV 253

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                  +       +    +         N  +E   +    L Q ++       +A +
Sbjct: 254 QPQYCGQAIEDSFSRITRMLEARYDFSQVENELKEDDRTAV-QLWQTNTQKEELEFVAKS 312

Query: 353 ISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFIL 412
           I   +              + +DI VL+    D        + + + Y+I         +
Sbjct: 313 IRQRLHDG----------ARYRDIRVLL---GDVEAYQLQLKTIFDQYQIPFYLGRSEAM 359

Query: 413 TDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF-NFSEDDIFKICTQRHETETVYEYIQ 471
             H  I+ + +LGR           + +LK+ L+ + +++++          E       
Sbjct: 360 VHHPLIQVIESLGRIKQFNYQTEDVINLLKTGLYSDLTQEEVDAFEQYLRFAEVKGATKF 419

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVIDVLD 530
                   + +  ++ ++ L           F        +    F       ++   L 
Sbjct: 420 HKPFTSNRQGKFNLEELNTLRQRVVEPLAPFFSQRKQKVTQLLTAFTEFLQEAQLSQNLQ 479

Query: 531 EFL-NFTLRNEQNSYSSLQELISELEQYPPTIKRAH----------------------SA 567
             + +  L  ++      +  +  LE+     +                          A
Sbjct: 480 ALIKDLALEEQERYDQVWKAFLHVLEELNLVFEDQELTVDDFLALLLSGMQLSQYRTVPA 539

Query: 568 NHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL---------NDDPGI 618
             + V + +    + L +P V+ +    + F         +                   
Sbjct: 540 TVDVVTVQSYDLIEPLTAPYVYAIGLTQERFPKIAQNTSLLSEEERQQLNEATQEGAELQ 599

Query: 619 PIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI--------ICKHSNT 670
            +     K    +   L+             L+       S  L+        I   +  
Sbjct: 600 VVTSENLKKNRFVAVSLLNAATNQLVLSAPSLVNEMEDSVSPYLVELAKEPIAIEWTTKQ 659

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETI 730
           +     +  T+  ++       +     +L+        +A            ++  +  
Sbjct: 660 AQASSDDIGTYRALLARVIELHQEEITSELSAEEASFWGVAVRVLRKKLAAEGIQIPQIS 719

Query: 731 KQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQT 779
            +L   Q     L +           L+ S ++   K              E        
Sbjct: 720 TELKSSQLQSDTLQALYPEGKAL--TLSASALNEYYKHQYAFYLRYVLGLQEDETIRPDA 777

Query: 780 FNRGLIIHKLLQVI----------FTLPEHKRKNFITSYCTKNAKLWPAKE--YKNLLLS 827
            + G  +H++ + +            L E  R+    +   +        E   + LL +
Sbjct: 778 RSHGNFLHRIFEKVLKDGSDQAFDRRLNEAIRETSQEAEFQQLYGESGETEFIRQLLLDT 837

Query: 828 ITRL---------LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI--SISQQ 876
                        +E     T     +++   +S       + + + G++D+I     + 
Sbjct: 838 AKTTGRVLAQQNGIETIGEETLFGGSTHTSYPLS-----DGRLLQLRGKVDRIDQLRDRG 892

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            + + +YK+        +       +QL  Y   ++D 
Sbjct: 893 ALGVVDYKSS-LTQFHYDKFFNGLNSQLPTYLSAIQDL 929


>gi|29566091|ref|NP_817661.1| gp72 [Mycobacterium phage Bxz2]
 gi|29424816|gb|AAN01826.1| gp72 [Mycobacterium phage Bxz2]
          Length = 271

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 68/252 (26%), Gaps = 63/252 (25%)

Query: 752 NEPYILNPSTIDTKGKTNLESLLSD-----NQTFNR---GLIIHKLLQVIFTLPEHKRKN 803
           +     + S +    +      L+       +       G  +H +L+            
Sbjct: 3   DTRKHRSVSQLKQYERCPYSYKLARVDKVWQRPAAWLPQGSAVHTVLEEYRRRELDGDPM 62

Query: 804 FITS------------------------YCTKNAKLWPAKEYKNL----LLSITRLLE-- 833
            +                          +  ++ +   A + +      L  I +     
Sbjct: 63  SLEEAQEMFKEEYAKEVSQYTDVTPNFDWWFRSGRYDGASDLERRWHIGLEQIEKFFAWT 122

Query: 834 --NPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF-EYKTHHHVP 890
             +P     ++ D      +    +     +++ G ID +        I  +YKT +   
Sbjct: 123 EGHPEEVIWIAPDGTP--GIELGFDIDLDGVLVRGYIDTVLRDSDGNVIVRDYKTGNTPG 180

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVF-----------IIPQNK 939
            +          QL +Y   L ++Y  +       Y++  K               P+ +
Sbjct: 181 DD---------FQLGVYSVALAETYGIEPPQIGDYYMAGKKGVKGKPTYPYDLGEWPRER 231

Query: 940 LNKAFAEISTKI 951
           + + F E+   I
Sbjct: 232 VAEKFRELEENI 243


>gi|56419216|ref|YP_146534.1| ATP-dependent deoxyribonuclease subunit B [Geobacillus kaustophilus
           HTA426]
 gi|81347987|sp|Q5L264|ADDB_GEOKA RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
 gi|56379058|dbj|BAD74966.1| ATP-dependent deoxyribonuclease subunit B [Geobacillus kaustophilus
           HTA426]
          Length = 1167

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 85/936 (9%), Positives = 242/936 (25%), Gaps = 217/936 (23%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                 K  +        +     L+    +    E +   +  LD ED +     LL +
Sbjct: 139 ELRRHAKAFEDGPDQPGRRLLADKLSDVALVYEELERSLIGH-YLDSEDYL----RLLAE 193

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               +      D     I ID     +  ++ +I  L          H    T+    D 
Sbjct: 194 HIPRSSYLRDAD-----IYIDGFHHFAPQEYMIIEQLLR--------HCRRVTVCLTID- 239

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL-PLSFRSTADILTVVDKVFSIP 281
                                 +        +  +  L   ++R   ++    D     P
Sbjct: 240 ----------------------RPYDDGMPDELHLFYLPAQTYRQLRELALSNDIAIEEP 277

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                        + H  ++            +     +               L + S+
Sbjct: 278 IVLSANRRHEDRALVHLEAQ------FHRRPLLPYGAKTDAV-----------HLYEASN 320

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  +A  I  ++  +           + +DI +++R    T     L + +  D+ 
Sbjct: 321 RRAEIEAVAREIIRLVRDE---------GARYRDIALIIR---QTEAYRDLVKTVFFDFG 368

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I    +++  +  H  I+ + A    ++++    +    +K+ L   ++ D+        
Sbjct: 369 IPYFMDEKEPMHHHPLIELVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAAD 428

Query: 462 ETETV----------YEYIQKFANCGISKF-----------QHVIKYIHELIH------- 493
           + E            +   +++A                  +     ++E          
Sbjct: 429 KLENYVLAYGIKGDKWTNNERWAYRRYQALDGLNVPQTDEERQFEDMLNEWREALAAPLR 488

Query: 494 ------------IAQFCSPHDFFTLI-----LGAKKGRQQ-----FISRFGNEVIDVLDE 531
                            + + F   +     L     + +       +R   +  + + +
Sbjct: 489 RLERRLRRAEDGRGFCMALYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVD 548

Query: 532 FLNFTLRNEQNSYSSLQELISELEQY-PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590
            L+  +         L E +  +E               ++V +  +  ++ ++    F+
Sbjct: 549 LLDQYVEMLGTESLPLAEFVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFV 608

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     V   K  +               +     + +   +   +    +         
Sbjct: 609 IGANDGVIPAKVKEDG-------------LMAEVEREQLRELGVALAPGGREQLFYDPFF 655

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           +Y+ +   S +L +         K          + + F +               ++  
Sbjct: 656 VYLALVCPSRRLYVTYPLADGEGKALMPSPLIKQLTELFPHAPVHLCGNDPFDAPAEKAE 715

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-------------------------- 744
           A+  +    +   + +    K+      +   ++                          
Sbjct: 716 AFVTAPRATQTYLISQLRAWKRNYGIDPLWWDVYNTFIGHRDWKEQVRHAVSALFYTNGA 775

Query: 745 -----SPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHK 788
                   +    +    + S ++   K              E  +   +  + G + H 
Sbjct: 776 TPLKKQWSQRLYGKKIQASVSRMEQFQKCPYAHFASHGLRLKERNVFRLEAPDVGQLFHA 835

Query: 789 LLQVIFTLPEHKRKNFITSYCTKNA-KLWPAKEYKNLLLSI-TRLLEN------------ 834
            ++ I      +  ++     ++   +   A+  + +   I  ++L +            
Sbjct: 836 AIKQIADRLREQHLDW--RELSRPDCERLSAEAVERIAPLIQQQVLSSSHRYEYMKRKLK 893

Query: 835 ---PMMTTAMSCDSYS--------EVSV-------SGKINCPKKDII-ISGRIDQISISQ 875
                 T  +S  + +        E+S          +   P   ++ + GRID++  ++
Sbjct: 894 HVVARTTHVLSEHARASGFVPIGLELSFGPNGDLPPLRFRLPDGTVMELVGRIDRVDKAE 953

Query: 876 QN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            +    + I +YK+      ++  + Y    Q+  Y
Sbjct: 954 SSQGVLLRIIDYKSSAKT-LDLTEVYYGLALQMLTY 988


>gi|213691704|ref|YP_002322290.1| ATP-dependent nuclease subunit B-like protein [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|213523165|gb|ACJ51912.1| ATP-dependent nuclease subunit B-like protein [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 1101

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 70/594 (11%), Positives = 158/594 (26%), Gaps = 51/594 (8%)

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ-ESWTSYFDSL 336
           F+    ++     +     H +  +G        E +  + D   N       +S   S+
Sbjct: 211 FAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLSSIFASSASTSV 270

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                 +   R  A +I   I  +          I   D+LV     +D           
Sbjct: 271 CAMPDTTAEVRYAAASIKKFIADNP--------EISYGDVLV---TSRDLGSYQAQIASE 319

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF----NFSEDD 452
                I +       + DH     ++ L      +    S + +L+S +F    N +   
Sbjct: 320 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLNLTPTA 379

Query: 453 IFKICTQRHET--ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           I  I  Q +     TV+          + K + +I+   ++       +  +    ++G 
Sbjct: 380 IDDIENQLNSNNPATVWIDTDIPFAAHLQKIRSLIQQAADVFRPRPSATVREALGGMVGF 439

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE-LISELEQYPPTIKRAHSANH 569
                Q I         +++ F +   +   + ++         L               
Sbjct: 440 LTEYAQTIEGSAPVWTVIMNAFDDMVQQLGNDYFAEYVGIFARNLASTLAAQSIDSRPVS 499

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
                +   ++       V ++            +   +      D    +         
Sbjct: 500 ASAVDVLPMSSPLHPYRYVIVLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLE- 558

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
              + L   +++ + +E        +  A+ QL +    +  N  ++           + 
Sbjct: 559 -AWNVLSGTVERRSGQEPL-WFNGVVASATQQLSMTYPKSLRNAAQACSPYISQWETGTS 616

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
              E +   K      + E+   +              E   +L        +++     
Sbjct: 617 DTSEIIGASKRAVPTVETEYRPLDR-------------ELAYRLFTRPDYVHRVYRTHGA 663

Query: 750 DINEPYIL---NPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVIFT 795
           D +    +   + S I+T  +   E  L                   G   H +L+    
Sbjct: 664 DPSISTRVFNASVSAIETYYRNPYEYFLKYGLKVNVANAFAFDAALEGTFYHAVLEHAVN 723

Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
               + KN              A + + L+   +RL       T ++ D   EV
Sbjct: 724 AWIERHKN--ERDLNGLPPQPTAPDMQELIADYSRLDRGCNQWTVLNEDPRMEV 775


>gi|27228553|ref|NP_758603.1| DNA helicase [Pseudomonas resinovorans]
 gi|219856974|ref|YP_002474006.1| DNA helicase [Pseudomonas sp. CA10]
 gi|26106141|dbj|BAC41581.1| DNA helicase [Pseudomonas resinovorans]
 gi|219688902|dbj|BAH09993.1| DNA helicase [Pseudomonas putida]
          Length = 693

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 72/259 (27%), Gaps = 30/259 (11%)

Query: 151 DLIINTNDLLKKRDVSAWIRYK--IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           D+     ++     +  W   K  +    +  L DE QD + +   +   L +    G  
Sbjct: 353 DIQNEAANITHDGYLKLWALSKPNLRDRYDIALGDEAQDINPV---IAGVLAQQAAYGMG 409

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                  +   GD  Q +Y F GA                     K  +  L  SFR  +
Sbjct: 410 -------VVVCGDGHQMLYRFRGAVDALNAT-----------WLDKAEVHYLTQSFRFGS 451

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD----SQCNP 324
            +  V + V +    ++ L+     T   ++          L   VV   +    +    
Sbjct: 452 AVAHVANMVLAFKGESRQLAGLGGETRVSKALPADLEHRTVLCRTVVGVIETALANVETG 511

Query: 325 QQESWTSYFDSLPQESSASILA--RRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVR 381
            +  W    +    +    + A  +     +    +  +    +  K++        + R
Sbjct: 512 AKIYWVGGIEGYNLQDLEDLHALSKGWRDRVKGKKLLQEYPDYDLYKQIADESQDPEMNR 571

Query: 382 KRKDTPLITFLTRFLKNDY 400
             K     +     L    
Sbjct: 572 SIKIIEQYSADLPELFAKL 590


>gi|225870332|ref|YP_002746279.1| ATP-dependent exonuclease subunit B [Streptococcus equi subsp. equi
           4047]
 gi|225699736|emb|CAW93493.1| putative ATP-dependent exonuclease subunit B [Streptococcus equi
           subsp. equi 4047]
          Length = 1073

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 79/714 (11%), Positives = 188/714 (26%), Gaps = 113/714 (15%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
                ++     L  +  + ++  +       +            +  + KD+LVL+   
Sbjct: 276 EANHDYSKLDWQLSAKDKSKVVIWQALNQKEELEHVAKAIREKLYQGYRYKDMLVLL--- 332

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            D          +   ++I      +  ++ H  ++ + +L R           V +LKS
Sbjct: 333 GDVASYQLQIGPIFEKFEIPYYIGKQEPMSAHPLVQFVESLERGRRYNWRREDIVNLLKS 392

Query: 444 PLFN-------------FSEDDI---------FKICTQRHETETVYEYIQKFANCGISKF 481
            LF                  DI         F + + R     +   ++      + + 
Sbjct: 393 GLFGRFQEGELDQLEQYLVFADIQGFTKFSRPFTLNSSRQYPLPLLNQLRLAVVTPLQQL 452

Query: 482 QHVIKYIHE--LIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRN 539
               K +    L  +  F                R++       EV       L    + 
Sbjct: 453 FKSQKQLGASLLDKLMTFFKTIQLADNFEALAGSRRETDREKDEEVWKAFTGILETFYQV 512

Query: 540 EQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVF 598
                 +L + ++ ++    T          + V I +    +    P VF +      F
Sbjct: 513 FGQEKMTLADCLALIKMGMQTAHYRTVPATLDVVSIKSYDLVEPHSKPFVFAIGLSRSHF 572

Query: 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA 658
             +      I               Q     +          K   +    L        
Sbjct: 573 PKQTKNTSLISDQERASINEQTASYQRLDVPSF------ENIKKNHQTALSLFNAAT--- 623

Query: 659 SDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH 718
             +L++   ++ +N          +++       E+ K     ++ +   + A       
Sbjct: 624 -QELVLSLPTSLTNSSDDVSPYLKELIALGVPVIEKGKNRLSHSAADIGNYKALLSRLVA 682

Query: 719 PENTPLEREETIKQLMDEQKIPKKLFS---------PIKNDINEPYILNPSTIDTKGKTN 769
                +  + T +         + L           P          + P  I+T+  + 
Sbjct: 683 INRQGIADDMTSEDRNFWTVALRYLKRRLADEQLSLPAFEHHLTTKPVAPEVIETRFSSQ 742

Query: 770 LESLLSD----------------------------NQTFNRGLIIHKLLQVI-------- 793
               LS                                   G  +H++ +++        
Sbjct: 743 QPLNLSSSALTVFYNNQYKYFLKYVLGLQEPESIHPDARIHGQYLHRIFELVTKDRSNAA 802

Query: 794 ------FTLPEHKRKNFITSYCTKNA-KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSY 846
                   +    +++        +A   +  +  K +  S   +L+           + 
Sbjct: 803 FDQKLGAAIAAVNQQSAFQQVYQADAEGRYSLEVLKGIAYSTASVLDLNQGLQI----TK 858

Query: 847 SEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLS 905
            E +    +    + ++I G ID+I         I +YK+   V   +         QL 
Sbjct: 859 QEEAFELAL---GQQVLIRGVIDRIDQLADGRLGIVDYKSSARVFDIVA-FYNGLSPQLV 914

Query: 906 IYEKILKD----SYPNKSLVCLLIYVSEPKVF-----IIPQNKLNKAFAEISTK 950
            Y   LK+     +       + +++ EP++       +    +  A+ E++ K
Sbjct: 915 TYLAALKNKGQGLFG-----AMYLHMQEPRLSLSDFKALDDQLVAAAYKELTYK 963


>gi|113868366|ref|YP_726855.1| hypothetical protein H16_A2392 [Ralstonia eutropha H16]
 gi|113527142|emb|CAJ93487.1| two domain protein: Inactivated superfamily I helicase and RecB
           family exonuclease [Ralstonia eutropha H16]
          Length = 955

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 58/547 (10%), Positives = 132/547 (24%), Gaps = 103/547 (18%)

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP--------------- 444
               V     + L+   A   LM     ++   D  + + +LKSP               
Sbjct: 338 AGAPVRDETGWKLSTTRAAAALMRWFDLLVRDGDTAALLDLLKSPFCLPEVAGRGAAIAL 397

Query: 445 ----------------LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                           L                E E   E  +  A+  I+         
Sbjct: 398 LERQVRREGITGGWARLRQLFGHAPTAAQQAATEDEGAAEAPRHAAHALIAVLADEAARW 457

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSL 547
              +      +  +    +L     R    +   G++++D L       L  E   +++L
Sbjct: 458 PRGLAQHPLATWLERLDGMLDGLGMRAALAADDAGSQLLDALARLQELPLD-ETGGHATL 516

Query: 548 Q--ELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
              E  + L         K   ++    + I+ ++ A+      V +V            
Sbjct: 517 SQGEFRAMLSALLESVAYKEPSASGPARITILPLNGARMRRFEGVVIVGCDDAQLPSSAA 576

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           + M     +             +  +    +     +     E            +D ++
Sbjct: 577 ELMFFSNQM------------RRELDLEDREARFAQQARDLAEVLL--------NNDDVV 616

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +      S  +  +   W + +                   +        ++       P
Sbjct: 617 LTWQRYGSRGEPHHVSGWIERLAACCARAGVSI------EASAAAQAHETFADPQGMPAP 670

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
                 +      Q        P +        L            LE++  + +    G
Sbjct: 671 AAEPALVPVRWSAQAYNMLRRCPYQFFAGRMLGLA----------GLETVSDELEKREIG 720

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
             +H +L       + +R+   T    +            +  ++   L           
Sbjct: 721 EHLHHVLLRYHKDLQARRERGETLAEDRRLARL-----AEISEAVFGALMAEDGNAIAYY 775

Query: 844 DSYSEV---------------------SVSGKINC---PKKDIIISGRIDQISISQQNIF 879
             + EV                      +   I+      + + ++GRID++        
Sbjct: 776 RRWREVMPSYVAWQSAREAEGWFWRGGELDAGIDLPMPDGQPLRLTGRIDRLDQGPGGAH 835

Query: 880 -IFEYKT 885
            + +YKT
Sbjct: 836 AVLDYKT 842


>gi|78356630|ref|YP_388079.1| hypothetical protein Dde_1587 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219035|gb|ABB38384.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 997

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 93/350 (26%), Gaps = 43/350 (12%)

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
           E          +     +++M +  A+ L    V+++D               +  +L  
Sbjct: 538 EVMNAERVPFEAEPLTGLQVMGMLEARLLRFRRVYVLDATENNLPGVPANDPLLPENLRG 597

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
             G+P    + +             +         LLY   T           S   +EK
Sbjct: 598 LLGLPDIRHRERV------SAYNFFRLIKGAREVTLLYQAGTT---------QSGLFDEK 642

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           K   R   ++++       R+ +             A  +S             +     
Sbjct: 643 KQRSRFLEELIWQDEQRTGRLLQAGTPPL------HAVSYSIPAISLHDAVIPRSATIDD 696

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
             +++  +  S    D      ++            E +   +     G ++H +LQ  F
Sbjct: 697 RIRELLARPVSATMLDSYLRCPVSFFYERLCRIAPAEQVNEGDDHLGVGDLMHAVLQEFF 756

Query: 795 T-----------LPEHKRKNFITSYCTKNAKLWPAKEYK------NLLLSITRLLEN-PM 836
           T           L               +                     +TR L N P 
Sbjct: 757 TPYAGQEITRGQLDAKALTGLFHQRLHSSGLQDTLPYDSYCMLSVAGPERLTRFLNNQPE 816

Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTH 886
            T  +      E ++  K+        I+GR+D++        + +YKT 
Sbjct: 817 TTRILKL----EEALEAKVEAGGSTYWIAGRLDRVDERDGCDIVLDYKTG 862


>gi|271969631|ref|YP_003343827.1| UvrD/REP helicase [Streptosporangium roseum DSM 43021]
 gi|270512806|gb|ACZ91084.1| UvrD/REP helicase [Streptosporangium roseum DSM 43021]
          Length = 685

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 92/289 (31%), Gaps = 38/289 (13%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L + L+  ++     R   +         A     +++     E  K+        L+  
Sbjct: 371 LAQNLRTLEEYLSAPRPGRSVELTAPERTAVWRAVEHVTGELRERGKRT-------LLQL 423

Query: 156 TND--LLKKRDVSAWIRYKIDQE--INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
             +  LL  +     +     +     HI++DE QD    QW ++R+             
Sbjct: 424 AAEASLLLSQTTGDLLEETAPRREPYRHIVVDEAQDLHPAQWRLLRA---------AVPH 474

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
           +   LF VGD  Q I+                 +    + G       L +S+R   +IL
Sbjct: 475 ARDDLFIVGDPHQRIF---------------DTRVTLGSVGIDAIQRRLQVSYRLPQEIL 519

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
           +   ++      A GL E         ++R G    V+ ++    +  +    Q   W  
Sbjct: 520 SWGVRL-RGGGPADGLVEGVQELYGLHATRHGHRPMVRAYDS-PEEELTGLVAQVGQWVE 577

Query: 332 YFDSLPQESSASILARRIAYTISNMIGTD-TIFSNGKKRVIQAKDILVL 379
                 +   A+  A  +    S +      + +    + ++ + + V+
Sbjct: 578 DGVPPREIGVAARTAGLVRDARSALHELGVRVTTLHGMKGLEFRRVAVI 626



 Score = 37.6 bits (85), Expect = 9.2,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 44/173 (25%), Gaps = 29/173 (16%)

Query: 500 PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP 559
             + + L       R    +    E  + L   +    +  ++     +E+         
Sbjct: 538 VQELYGLHATRHGHRPMVRAYDSPE--EELTGLVAQVGQWVEDGVP-PREIGVAARTAGL 594

Query: 560 TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
                 + +   VR+ T+H  KGLE   V ++     +                      
Sbjct: 595 VRDARSALHELGVRVTTLHGMKGLEFRRVAVIGVADGIVPSPESLTPAGEDP-------- 646

Query: 620 IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                               +    +    LLYV  TRA + L +      S 
Sbjct: 647 ------------------SARAHDLQRERGLLYVACTRARELLYVSYSGRASP 681


>gi|220931258|ref|YP_002508166.1| hypothetical protein Hore_04130 [Halothermothrix orenii H 168]
 gi|219992568|gb|ACL69171.1| hypothetical protein Hore_04130 [Halothermothrix orenii H 168]
          Length = 864

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 56/517 (10%), Positives = 138/517 (26%), Gaps = 75/517 (14%)

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
            F+ +E+ +  +     E    +          + +F  V++ I +L  I       ++ 
Sbjct: 330 YFSINENAVKVLQELAREEYAYFYPGFIKRYISLKRFGEVLEEIEKLRQIENINQLCNYL 389

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEF--------LNFTLRNEQNSYSSLQELI-SELE 555
              L       + IS    +  D L E         ++      ++    L  +  + L 
Sbjct: 390 EN-LNLYFLNDREISNNITQYFDALLELNSLEEMGIVSSWDHYFKDKARGLFRMALNYLR 448

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                    +    N  ++ ++ +A  L   ++ +++    V   +      +      +
Sbjct: 449 YKKVKPVIDNQNKGN--KLDSLFSAPHLSRDILIVLNASRGVIPSEAGNDFILTDRQRAE 506

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            G+                +     +     Y  +L    T      II    N  +   
Sbjct: 507 LGL--------------ETINNLRLREKYYFYRHILNSQKT------IIFSLKNLESNLT 546

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
           ++       +       E     +   ++ +  + A   +     +   + ++ + +  D
Sbjct: 547 TSSFVDELRLKYGLDLKEAEITSRQLPAVIRRIFPAKPAALGMVSSVSRKEDKLVIETDD 606

Query: 736 EQKIPKKL-FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL-QVI 793
                  L +      I+  Y      +    +  +  +  +      G  +H++  +V+
Sbjct: 607 FPGNQMSLSYYRYTTLIDCYYKFYLEKLVRLAEDRV-VVDREMSPLLFGNFVHEVFAEVL 665

Query: 794 FT------LPEHKRKNFITSYCTKNAKLWP--------AKEYKNLLLSITRLLENPMMT- 838
                   + +   +  I                          +  S+           
Sbjct: 666 NRQGRNLNVSKEVVEEVIVDKLNSYRLQINNYYLPYYRKVLLPTVRDSVISFFRGLKRRV 725

Query: 839 ---------TAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHV 889
                          S   V  +        D+ ++GR+D I  +    FI ++KT    
Sbjct: 726 KGEIVDIKIEWQPEKSKDRVIFNHDFT----DVFLNGRVDLIIETSDTRFIIDFKTGQGK 781

Query: 890 PQEIEHIPYTHIAQLSIYEKILKDSY-PNKSLVCLLI 925
                        QL  Y  +L   Y   K +   L 
Sbjct: 782 ED-----------QLDFYSLLLAPDYGSEKKVAKELY 807


>gi|282164943|ref|YP_003357328.1| hypothetical protein MCP_2273 [Methanocella paludicola SANAE]
 gi|282157257|dbj|BAI62345.1| hypothetical protein [Methanocella paludicola SANAE]
          Length = 404

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 71/224 (31%), Gaps = 22/224 (9%)

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
           +P    S +    N P     + +D      +   +        G  +H+ L+ +++   
Sbjct: 1   MPTYSHSRLSAYENCPLKYRFAYVDRVKLERMPESIE----AFMGKRVHETLEKLYSDRM 56

Query: 799 HKRKNFITSYCTKNAKLWPAKEYK--NLLLSITRLLE-NPMMTTAMSCDSYSEVSV---- 851
             +++ +         +W         ++     +   +      ++             
Sbjct: 57  LSKEDTMDELLDFYDGVWGKNWSDDVQIVRKDLTVENYHETGRRCVADYYRRYAPFDQGR 116

Query: 852 ----SGKINCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
                  +        + G ID++ ++      I +YKT   +P   E   +    QL++
Sbjct: 117 TLKLEAPVYINIDGYRLMGYIDRLDLTGDGRYEIHDYKTSRSLP---EQQYFDGDRQLAL 173

Query: 907 YEKILKDSYPN-KSLVCLLIYVSEPKVFI--IPQNKLNKAFAEI 947
           Y+  +++ + + + +  +  Y+   +          L +  A +
Sbjct: 174 YQIGVRNMWKDAEKVDLVWHYLVYDREMRSCRSPECLERLKASV 217


>gi|150007829|ref|YP_001302572.1| hypothetical protein BDI_1187 [Parabacteroides distasonis ATCC
           8503]
 gi|149936253|gb|ABR42950.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 959

 Score = 61.1 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 137/437 (31%), Gaps = 76/437 (17%)

Query: 547 LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +      L++   TI         + ++IM V   + L+   + ++     +F  +    
Sbjct: 501 IDTFFRLLKRVTDTITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAAN 560

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             I  +L    G+P +      ++++ +                  Y  + RAS   ++ 
Sbjct: 561 SFIPYNLRRGFGLPTYEH----QDSVWAYH---------------FYRLIERASHVSLLY 601

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              +   +     R  + + Y           +   +            S+  P     +
Sbjct: 602 DTRSNGLQTGEVSRFVHQLHYHYEVPMRDKLVVYNVS------------SSKTPPLAVPK 649

Query: 726 REETIKQLMDEQK--IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
           RE+ +++L   +K        S I   ++ P     S ++   +    S   ++     G
Sbjct: 650 REDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSVVEGIREEEEVSETIESD--VFG 707

Query: 784 LIIHKLLQVI----------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI--TRL 831
            I+HK+++ +            L +  RK+                    ++ S+     
Sbjct: 708 SILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIARAFASEFFKTEVVRSLTGQNY 767

Query: 832 LENPMMTT----AMSCDSY--------SEVSVSGKINCPK-KDIIISGRIDQISISQQNI 878
           L   M+       +  D          SE  ++G I+     +I + G ID++   +  I
Sbjct: 768 LIGEMIRKYVEKILERDGKLTPFVYIESERKINGLISLSDYSEIRLKGFIDRVDEVRDAI 827

Query: 879 FIFEYKTHHHVP---------QEIEHIPYTHIAQL----SIYEKILKDSYPNKSLVCLLI 925
            I +YK+               + E      + Q+     +Y  + ++    K++   + 
Sbjct: 828 RIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMYCWMYAHLTEN--KGKTIQPGIY 885

Query: 926 YVSEPKVFIIPQNKLNK 942
           YV          +  ++
Sbjct: 886 YVRSLFADPFDPSVYHR 902


>gi|265763689|ref|ZP_06092257.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256297|gb|EEZ27643.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 957

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/500 (12%), Positives = 141/500 (28%), Gaps = 76/500 (15%)

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +          +  + +  YI EL+         +  +  +  +  R+     F      
Sbjct: 420 DKFLDILFTPRNGIRELCVYITELLKEVSVLYRQEQESDDIFNQLYRESLFKSFTL---- 475

Query: 528 VLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            ++  LN    NE Q    +L+ L++++                 ++IM V   + L+  
Sbjct: 476 -VNRLLNLIDNNELQVRIETLKRLLNKILNAANIPFH--GEPAIGMQIMGVLETRNLDFR 532

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            + L+            +   I  +L    G+     ++              +   + E
Sbjct: 533 NLLLLSLNEGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAE 586

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              L+Y                NTS++  +       M+         + +  L    + 
Sbjct: 587 NITLMY----------------NTSSDGLNRGEWSRFMLQFLIEWPHEISREYLEAGQSP 630

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                   +        L R     +  D       + SP   +      L         
Sbjct: 631 QNSKEIRITKTPEIIDRLYRTYDFSRNPD-----ALILSPSALNTYLDCRLKFYFRYVAR 685

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE--YKNL 824
               + + ++  +   G I H+  Q+++      +++       +  +     +      
Sbjct: 686 LKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTANKRDVHKEDLERLLRDNIRLQNYVDIA 745

Query: 825 LLSI--------------TRLLENPMMTTAMSCDSYS------------EVSVSGKINCP 858
              I               +L+ + ++T+ +     +            E  V   I   
Sbjct: 746 FKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQLLRNDLQYAPFRMMGMEQEVVEDIRIE 805

Query: 859 KK----DIIISGRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSI 906
                  + I G ID++   +  + I +YKT      P  IE +         +I Q  +
Sbjct: 806 GPVGKLSLRIGGTIDRMDSKEGTLRIVDYKTGGSPKVPANIEQLFTPAEGRPNYIFQTFL 865

Query: 907 YEKILKDSYPNKSLVCLLIY 926
           Y  I+      K +   L+Y
Sbjct: 866 YAAIMARQQALK-VAPSLLY 884


>gi|261418925|ref|YP_003252607.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC61]
 gi|319765742|ref|YP_004131243.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC52]
 gi|261375382|gb|ACX78125.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC61]
 gi|317110608|gb|ADU93100.1| ATP-dependent nuclease subunit B [Geobacillus sp. Y412MC52]
          Length = 1172

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 86/936 (9%), Positives = 245/936 (26%), Gaps = 217/936 (23%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKK 162
                 +  +   +    +     L+    +    E +   +  LD ED +     LL +
Sbjct: 144 ELRRHAEAFEDGPSQPGRRLLADKLSDVALVYEELERSLIGH-YLDSEDYL----RLLAE 198

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
               +      D     I ID     +  ++ +I  L          H    T+    D 
Sbjct: 199 HIPRSSYLRDAD-----IYIDGFHHFAPQEYMIIEQLL--------LHCRRVTVCLTID- 244

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL-PLSFRSTADILTVVDKVFSIP 281
                                 +        +  +  L   ++R   ++    D     P
Sbjct: 245 ----------------------RPYDDGMPDELHLFYLPAQTYRQLRELALSNDIAIEEP 282

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
                        + H  ++            +     +               L + S+
Sbjct: 283 IVLSANRRHEDRALVHLEAQ------FHRRPLLPYGAKTDAV-----------HLYEASN 325

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  +A  I  ++  +           + +DI +++R    T     L + +  D+ 
Sbjct: 326 RRAEIEAVAREIIRLVRDE---------GARYRDIALIIR---QTEAYRDLVKTVFFDFG 373

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I    +++  +  H  I+ + A    ++++    +    +K+ L   ++ D+        
Sbjct: 374 IPYFMDEKEPMHHHPLIELVRAALETVVTRWRYEAVFRAVKTDLLFPTDGDLHMWREAAD 433

Query: 462 ETETV----------YEYIQKFANCGISKF-----------QHVIKYIHELIH------- 493
           + E            +   +++A                  +     ++E          
Sbjct: 434 KLENYVLAYGIKGDKWTNNERWAYRRYQALDGLNVPQTDEERQFEDMLNEWREALAAPLR 493

Query: 494 ------------IAQFCSPHDFFTLI-----LGAKKGRQQ-----FISRFGNEVIDVLDE 531
                            + + F   +     L     + +       +R   +  + + +
Sbjct: 494 RLERRLRRAEDGRGFCMALYLFLEELQIPKKLEKMSAQAEADGRLVEARQHEQAWNAVVD 553

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFL 590
            L+  +         L E +  +E     ++ +      ++V +  +  ++ ++    F+
Sbjct: 554 LLDQYVEMLGAESLPLAEFVKIIEAGLDRLEFSLVPPAMDQVIVAQLDRSRLIDIKYAFV 613

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     V   K  +   +     +             R  +  D                
Sbjct: 614 IGANDGVIPAKVKEDGLMAEVEREQLRELGVALAPGGREQLFYDPFF------------- 660

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           +Y+ +   S +L +         K          + + F +               ++  
Sbjct: 661 VYLALVCPSRRLYVTYPLADGEGKALMPSPLIKQLTELFPHAPVHLCGNDPFDAPAEKAE 720

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF-------------------------- 744
           A+  +    +   + +    K+      +   ++                          
Sbjct: 721 AFVTAPRATQTYLISQLRAWKRNYGIDPLWWDVYNTFIGHRDWKEQVRHAVSALFYTNGA 780

Query: 745 -----SPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHK 788
                   +    +    + S ++   K              E  +   +  + G + H 
Sbjct: 781 TPLKKQWSQRLYGKKIQASVSRMEQFQKCPYAHFASHGLRLKERNVFRLEAPDVGQLFHA 840

Query: 789 LLQVIFTLPEHKRKNFITSYCTKNA-KLWPAKEYKNLLLSI-TRLLEN------------ 834
            ++ I      +  ++     ++   +   A+  + +   I  ++L +            
Sbjct: 841 AIKQIADRLREQHLDW--RELSRPDCERLSAEAVERIAPLIQQQVLSSSHRYEYMKRKLK 898

Query: 835 ---PMMTTAMSCDSYS--------EVSV-------SGKINCPKKDII-ISGRIDQISISQ 875
                 T  +S  + +        E+S          +   P   ++ + GRID++  ++
Sbjct: 899 HVVARTTHVLSEHARASGFVPIGLELSFGPNGDLPPLRFRLPDGTVMELVGRIDRVDKAE 958

Query: 876 QN----IFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
            +    + I +YK+      ++  + Y    Q+  Y
Sbjct: 959 SSQGVLLRIIDYKSSAKT-LDLTEVYYGLALQMLTY 993


>gi|38638556|ref|NP_943142.1| putative DNA helicase [Pseudomonas sp. ND6]
 gi|34335344|gb|AAP44242.1| putative DNA helicase [Pseudomonas sp. ND6]
          Length = 693

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 65/235 (27%), Gaps = 28/235 (11%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +    +  L DE QD + +   +   L +    G         +   GD  Q +Y F GA
Sbjct: 377 LRDRYDIALGDEAQDINPV---IAGVLAQQAAYGMG-------VVVCGDGHQMLYRFRGA 426

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                                K  +  L  SFR  + +  V + V +    ++ L+    
Sbjct: 427 VDALNAT-----------WLDKAEVHYLTQSFRFGSAVAHVANMVLAFKGESRQLAGLGG 475

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHD----SQCNPQQESWTSYFDSLPQESSASILA-- 346
            T   ++          L   VV   +    +     +  W    +    +    + A  
Sbjct: 476 ETRVSKALPADLEHRTVLCRTVVGVIETALANVETGAKIYWVGGIEGYNLQDLEDLHALS 535

Query: 347 RRIAYTIS-NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           +     +    +  +    +  K++        + R  K     +     L    
Sbjct: 536 KGWRDRVKGKKLLQEYPDYDLYKQIADESQDPEMNRSIKIIEQYSADLPELFAKL 590


>gi|251764595|sp|A4IKW6|ADDB_GEOTN RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease AddB
          Length = 1167

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 96/925 (10%), Positives = 239/925 (25%), Gaps = 194/925 (20%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
                   + +  +     +     L+    +    E +   +  LD ED +     LL 
Sbjct: 138 DELRRHAGVLESGSGQPGRRLLADKLSDVALVYEELERSLLGH-YLDSEDYL----RLLV 192

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           +    +   +  D     I ID     S  ++ VI  L               T+    D
Sbjct: 193 EHIPRSSYLHGAD-----IYIDGFHHFSPQEYMVIEQLL--------HRCRRVTVCLTAD 239

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
                                          +         ++R   + L + + +    
Sbjct: 240 R----------------------PYDVGMPDELDLFYLPAQTYRQLRE-LALANDIM--I 274

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           E+   LS +     +  +    Q     L                         L + ++
Sbjct: 275 ESPVVLSVNRRHQDKALAHLEEQFHRRPLLPYEAETDAIC--------------LYEAAN 320

Query: 342 ASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401
                  +A  I  ++  +           + +DI +++R    T     L + +  D+ 
Sbjct: 321 RRAEIEAVAREIIRLVRDE---------GARYRDIALIIR---QTEAYRDLVKTVFFDFD 368

Query: 402 ISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
           I    +++  +  H  I+ + A    ++++    +    +K+ L    + D+        
Sbjct: 369 IPYFMDEKEPMHYHPLIELVRAALETVVTRWRYEAVFRAVKTDLLFPVDGDLAMWREAAD 428

Query: 462 ETETV---------------------YEYIQKFANCGISKFQHVIKYIHELIHI------ 494
           + E                       Y+ +         + +     ++E          
Sbjct: 429 KLENYVLAHGVKGEKWTSDERWTYRRYQALDGLNVPQTDEERQFEDKLNEWREALAAPLR 488

Query: 495 ---------AQFCSPHDFFTLILGAKKGRQQFI--------------SRFGNEVIDVLDE 531
                    A          L L   +  ++                +R   +  + + +
Sbjct: 489 RLERRLRRAADGRGLCTALYLFLEELQIPKKLEQMSAQAEADGRLVEARQHEQAWNAVVD 548

Query: 532 FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFL 590
            L+  +         L E    +E     ++ A      ++V +  +  ++ ++    F+
Sbjct: 549 LLDQYVEMLGAEPLPLAEFAKIIEAGLDRLEFALVPPAIDQVIVAQLDRSRLIDVKYAFI 608

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           +     V   K   +  +     +             R  +  D             +R 
Sbjct: 609 IGVNDGVIPAKVKDEGLVAEVEREQLRELGVALAPGGREQLFYDPFFVYLA--LACPSRR 666

Query: 651 LYVGMTRA---------------------SDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
           LYV    A                        + +C +      ++  +           
Sbjct: 667 LYVTYPLADGEGKALMPSPLIKQLVQLFPRVSVHLCGNDPFDAPEEKPETFVTVPRATQT 726

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
           +   +++  K    I+   W  Y     HPE     R E     +             + 
Sbjct: 727 YLISQLRAWKRNYGIDPLWWDVYNVLISHPEWR--ARVEQAVSGLFYTNQAVLKREWSRR 784

Query: 750 DINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIFTLPE 798
              +    + S ++   K              E  +   +  + G + H  ++ I     
Sbjct: 785 LYGKKIQASVSRMEQFQKCPYAHFASHGLRLKERNVFRLEAPDVGQLFHAAIKQIADRVR 844

Query: 799 HKRKNFITSYCTKNAKLWPAKEYKNLLLSITR-LLEN---------------PMMTTAMS 842
            +  ++         +   A+  + +   I + +L +                  T  +S
Sbjct: 845 EQHLDW-KQLSRSECERLSAEAVERIAPLIQQQVLSSSNRYEYMKRKLKNVVARTTHVLS 903

Query: 843 CDSYS----EVSVSG-----------KINCPKKDII-ISGRIDQISISQQN----IFIFE 882
             + +     V               +       ++ + GRID++  ++ +    + I +
Sbjct: 904 EHARASGFAPVGFELSFGPGGDLPPLRFQLRDGTVMELVGRIDRVDKAESSQGVLLRIID 963

Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIY 907
           YK+      ++  + Y    Q+  Y
Sbjct: 964 YKSSAKT-LDLTEVYYGLALQMFTY 987


>gi|21756223|dbj|BAC04838.1| unnamed protein product [Homo sapiens]
          Length = 738

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 25/280 (8%)

Query: 22  PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                 +    +    +   G+ +   KA  ++       +   F +  +    +    +
Sbjct: 448 AQEESTIPSWQEDEEEAEVDGDYSEEDKAVEMRTGDSDPRVYVTFEVFKNEVWPKMTKGR 507

Query: 82  KNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
                    +EI        E L        +   +    K   +     +    L + Y
Sbjct: 508 TAYNPALIWKEIKSFLKGSFEALSCPHGRLTEEVYKKLGRKRCPNFKEDRSEIYSLFSLY 567

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           ++ + +    D ED++ N +  L K  V  W        I+ +  DE+QD +  +  ++ 
Sbjct: 568 QQIRSQKGYFDEEDVLYNISRRLSKLRVLPW-------SIHELYGDEIQDFTQAELALLM 620

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRATNAGQ 253
                        + P ++F  GD  QSI    +F  ++ +       R    +     +
Sbjct: 621 KCI----------NDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASRNTIDKQCAVRK 670

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
              I +L  ++RS + IL +   V  + +     S D   
Sbjct: 671 PKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLP 710


>gi|228907925|ref|ZP_04071776.1| hypothetical protein bthur0013_20890 [Bacillus thuringiensis IBL
           200]
 gi|228851684|gb|EEM96487.1| hypothetical protein bthur0013_20890 [Bacillus thuringiensis IBL
           200]
          Length = 547

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 70/537 (13%), Positives = 145/537 (27%), Gaps = 120/537 (22%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +   L   +++     LL   ++    R  +  +   ILIDE QDT+    +    L   
Sbjct: 116 EKGSLTHSEVLKIFCFLLDSNEL---FRKLVCHKYPIILIDECQDTNKEVLDAFLKL--- 169

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                    +   L   GD  Q +Y          L  K    +           +    
Sbjct: 170 ------NRENKICLGLFGDIMQRVY----------LDGKTDLIQSLKGLEMPEKKV---- 209

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           ++RS   I+   + +    +N                                 + +   
Sbjct: 210 NWRSYGRIVKFTNALRKNIDN--------------------------------LEQEVCN 237

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
             ++         +  E   +     +   I   +  + + S      +  +  L   R 
Sbjct: 238 GDRENKGLIRICLVNHELPRTKSEEDVLENIRTQVINNNVDSEYNPYKLVLEHRLAAERN 297

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                    L    K+    +    D     +H   K ++      L   DD S   +LK
Sbjct: 298 N-----FLKLFDAFKSGKDTNKTIIDGES-REHTFFKQIIIPLYLALKANDDFSLHRLLK 351

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           +  + F E +   I + R                    F+  ++  ++        +  D
Sbjct: 352 NYSYRFEELNRKNIDSYR------------ILRDIGIDFKKFLETFND------DITVGD 393

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL-RNEQNSYSSLQELISELEQYPPTI 561
               IL +                  L E         ++ +       +  +E      
Sbjct: 394 VCEAILKS-----------------NLFEVPEKLKVDFQEETGWKFVFEVDFIELVNFYE 436

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                ++     I+T   +KGLE   V ++     +  +    ++     L       + 
Sbjct: 437 YIDGVSD-----IITQQGSKGLEYNHVQVI-----IDDYSAKGRLFSYEKLFGVKEKSVK 486

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQ 678
              +              K++T  + NRL YV  +RA   L++  ++    + K   
Sbjct: 487 DIDN----------EAQGKETTLHKTNRLFYVACSRAIKSLVLIIYTANQQKVKEFF 533


>gi|296117284|ref|ZP_06835875.1| hypothetical protein GXY_15752 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976177|gb|EFG82964.1| hypothetical protein GXY_15752 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 1049

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/614 (9%), Positives = 154/614 (25%), Gaps = 56/614 (9%)

Query: 301 RIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS-NMIGT 359
                    L     +    +            +   + ++     R +A  ++  +   
Sbjct: 350 PAPAPQLDGLSVLHTADQQEEAAAIALILRQAIEQPGRPAALVTPDRALAGRVATELARW 409

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
             +  +     +        +R              L +  K  +            + +
Sbjct: 410 GVVADDSAGEGLATTPQATFLRLIVQAVDGGLSPVALLSLLKHPLAACGLSPGNCRASAR 469

Query: 420 DLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGIS 479
            L        +    ++ +    S         +        E     + +++  +  +S
Sbjct: 470 LLERAILRGPAPPPGIAGLRAALSRATQDEHGALADAPDAPQELSAFLDRLERALDPLLS 529

Query: 480 KF---QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF-ISRFGNEVIDVLDEFLNF 535
           +    + V+  +  L+ +AQ  +  D      G   G  +      GN +   L E L +
Sbjct: 530 RASGMEEVVDLLSALVEVAQALATTDAHADTEGGGDGASRLWSGEEGNALGAHLAELLTW 589

Query: 536 TLRNEQNSYSSLQELIS------ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589
                     +L  L++       +        R  +A H  V I  +  A+   +  + 
Sbjct: 590 CDVLPAQRVGALDGLLASSLAGVTVHGRRALRGREQAAVHPRVFIWGLLEARLQTAGTIV 649

Query: 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649
           L      V+         +               +    +   +                
Sbjct: 650 LGGLVETVWPPATDPGPWMSRP---------MRTRICLPSPECAIGQAAHD--------- 691

Query: 650 LLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEW 709
             ++    A+ ++++              R    +        + +      + + + + 
Sbjct: 692 --FIACACAAPEVVLSVPGRRQGAPAVAARWLVRLDAYLSGRGQALATHPALSWLERLDR 749

Query: 710 IAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN 769
            +   +   P            + +   +I   +  P          L P          
Sbjct: 750 PSGAPAPVAPPRPCPPVA-LRPRSLSVTEIEIWMRDPYAIYARRILGLKP---------- 798

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKR------------KNFITSYCTKNAKLWP 817
           L  L       + G I+H+ L   FT                  +  +     + A    
Sbjct: 799 LAGLEEMADAADYGEIVHEALDRWFTRYPDHWPRDGEEEMVRVFEQVLHDARLRPALAAW 858

Query: 818 AKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN-CPKKDIIISGRIDQISIS-Q 875
                  +     + E        SC   +E+S   +++       ++ GR D+I    +
Sbjct: 859 WAPRLGRIARWCAMTEEARRAGGASCSVMTELSGKMELSGFSFGTFVLRGRADRIDRDGE 918

Query: 876 QNIFIFEYKTHHHV 889
             + +F+YKT    
Sbjct: 919 GGLSLFDYKTGTLP 932


>gi|330991805|ref|ZP_08315754.1| hypothetical protein SXCC_01710 [Gluconacetobacter sp. SXCC-1]
 gi|329760826|gb|EGG77321.1| hypothetical protein SXCC_01710 [Gluconacetobacter sp. SXCC-1]
          Length = 1016

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/353 (11%), Positives = 83/353 (23%), Gaps = 53/353 (15%)

Query: 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
           H  V I  +  A+   +  + L      V+         +   +    G+P         
Sbjct: 596 HPRVFIWGLLEARLQTADTIVLGGLVETVWPPATDPGPWMSRPMRTRVGLPAPEWVIGQA 655

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDS 688
            +                     +V    A+ ++++              R    +    
Sbjct: 656 AHD--------------------FVSCACAAPRVVLSVAGRRQGAPTVPARWLVRLDAYL 695

Query: 689 FHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIK 748
             +   +        +   +  A       P   P        + +   +I   +  P  
Sbjct: 696 AGHGHGLPAHPALRWLEGLDRPAGVPMPVAP-PRPRPAVGLRPRSLSVTEIETWMRDPYA 754

Query: 749 NDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSY 808
                   LN           L  L       + G I+H  L   F              
Sbjct: 755 IYARRILKLN----------RLADLEELADAADYGQIVHAALDRWFRAHPADWPADGAV- 803

Query: 809 CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS----------------VS 852
             +   ++     +  L         P +    +  + +E +                  
Sbjct: 804 --RMQAVFADVLREAGLRPALAAWWAPRLERIATWCARTEQARRATGAPCTVLTEQGGTM 861

Query: 853 GKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQL 904
              + P     + GR D+I +       +F+YKT     +    +     +QL
Sbjct: 862 RLDDLPGGAFTLRGRADRIDLHGDGALSLFDYKTGTLPARRS--VIEGWQSQL 912


>gi|312905078|ref|ZP_07764202.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|310631617|gb|EFQ14900.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
          Length = 271

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 66/214 (30%), Gaps = 39/214 (18%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  +D +    G  +H   +    + E  ++   +   +        K
Sbjct: 38  EAAALAKLKGEWTPENDPKALLVGNYVHSYFES-PEIHEAFKEENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +          +       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIYQGEK------EVIVTGEIGGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSY------------PN 917
             + KT    H  +  E +           ++ Q+++Y ++L+  Y              
Sbjct: 149 FVDIKTTKDMHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQYDKNFLPLIAAVSKQ 208

Query: 918 KSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTKI 951
           K         SE K+  + + K+     E+   I
Sbjct: 209 KP--------SEAKLITLSEEKMIYELEELKENI 234


>gi|37521314|ref|NP_924691.1| hypothetical protein glr1745 [Gloeobacter violaceus PCC 7421]
 gi|35212311|dbj|BAC89686.1| glr1745 [Gloeobacter violaceus PCC 7421]
          Length = 269

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 68/181 (37%), Gaps = 18/181 (9%)

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSYCTKN--AKLWPAKEYKNLLLSITRLLENPMMTTA 840
           G  +H +L+ +    + + ++ ++S             +  +    +    L +  + T 
Sbjct: 49  GRAVHTVLEQLVRQEQIRPEDAVSSLERTFSWGAYTDRQTAEAAFQTARARL-DAWVGTP 107

Query: 841 MSCDSYSEVSVSGKI--------NCPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQ 891
               +  +++V   +        +     +++ G+ D + +  +  + + ++K+      
Sbjct: 108 YGWGAGEQLAVEKMLRTRPRPLGSASIGSVVLIGKPDLVRVDPEGTLEVVDHKSGK-PGD 166

Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSL-VCLLIYVSEPKVFII--PQNKLNKAFAEIS 948
            +E +      Q +IY  + ++ +P+ S       Y++   V  +   + ++   +  + 
Sbjct: 167 GVEALKRD--FQAAIYRILAEERWPDYSAYRVSFSYLATGTVIGLTYTREEVEDWWQALL 224

Query: 949 T 949
           T
Sbjct: 225 T 225


>gi|326403647|ref|YP_004283729.1| double-strand break repair protein AddB [Acidiphilium multivorum
           AIU301]
 gi|325050509|dbj|BAJ80847.1| double-strand break repair protein AddB [Acidiphilium multivorum
           AIU301]
          Length = 959

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/535 (10%), Positives = 123/535 (22%), Gaps = 42/535 (7%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +            I    +    L D      L  L     S  D +  + +LK PL 
Sbjct: 350 RGLAQRVAAELERLGIRAEDSAGERLADTPPAVLLRLLAAAAASDYDAVPLLALLKHPLV 409

Query: 447 NFS-----------EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH-ELIHI 494
           N               D+           +   +    +          +  +   L  +
Sbjct: 410 NAGLPAGRCRALARRLDLLLRAALPGPGFSAMRHAADHSTKPDEALSTFLADLQVSLRPL 469

Query: 495 A---QFCSPHDFFTLILGAKKGRQQ--FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           +      SP      ++ A +      +    G  + + L   +           + L  
Sbjct: 470 SLGPAKTSPASLLAGLVEAAEAIADELWTGEAGAALSEHLAVQIAALDALPDVEATELVP 529

Query: 550 LISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIM 609
           L+  +       +      +  V I  +  A+      + L      VF  +      + 
Sbjct: 530 LLDAVLGNARLRRPRARDANPRVAIWGMMEARLQRVDTLVLGGLVEGVFPAEPEPGPWLS 589

Query: 610 PSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669
             +     +P    +     + +  LI    +       R        +     I     
Sbjct: 590 RPMRRAARLPDDAERIGEAAHDLGILIASCDEVILSAPRRRGRAPAVPSRFLARIDLALR 649

Query: 670 TSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET 729
            +          +      +        +++     +    A      +  +        
Sbjct: 650 GAGSALKQHPASH------WSTRLDQPTLRIARPRPEPRPPARARPISYSISKVTTLLSD 703

Query: 730 IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
              +   + +     +P++ + +       +    K  T      S      R  + H  
Sbjct: 704 PYAIYAGEVLDLHTLNPLQAETDAALFGTITHDALKAVTRTRDWASAPDAAAR--LAHA- 760

Query: 790 LQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
                      R   +          +     + +   I   +E   +      D    +
Sbjct: 761 ------FTSELRGKRLRRALEA----FWLVRLERIAEWIVE-IERGRLADLGKADD---I 806

Query: 850 SVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
            V            + GR D+I    + + I +YKT      +          QL
Sbjct: 807 KVELPGEWRFGHFTVKGRADRIERRGETLAIIDYKTGSPPADKAVEAGSA--PQL 859


>gi|228899606|ref|ZP_04063861.1| DNA helicase II [Bacillus thuringiensis IBL 4222]
 gi|228860036|gb|EEN04441.1| DNA helicase II [Bacillus thuringiensis IBL 4222]
          Length = 645

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 73/213 (34%), Gaps = 38/213 (17%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           + L++    +  K      I+ ++ Q+   I IDE QD++     +              
Sbjct: 145 DSLLLFAEKVFDKFP---KIKMRLTQKYQSIFIDEYQDSAASVLRMFYK---------AC 192

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
            ++   L+ +GD+ Q IY             +   +   T+       I+L ++ RS  D
Sbjct: 193 LNTKSNLYFLGDKMQQIYK------NYDGSFEEELKTLNTD-------IKLDINHRSIPD 239

Query: 270 ILTVVDKV-----FSIPENAQGLSEDSTTT--------IRHRSSRIGQVGTVQLWEQVVS 316
           I++V++ +     F    + + L               I+ R  R   +    L   +++
Sbjct: 240 IVSVLNNIYNDKGFKQNPSKKNLDIKPDHPPRIIMCDNIQERLKRECSIYPDALLLFLLN 299

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
           Q        +E +  +        +  + A  +
Sbjct: 300 QQKFASIGARELYKQFSHLERYSHAKQLSATDV 332


>gi|90421910|ref|YP_530280.1| hypothetical protein RPC_0386 [Rhodopseudomonas palustris BisB18]
 gi|90103924|gb|ABD85961.1| DNA helicase/exodeoxyribonuclease V, subunit B [Rhodopseudomonas
           palustris BisB18]
          Length = 1042

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/415 (11%), Positives = 110/415 (26%), Gaps = 60/415 (14%)

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
            +   + R   A    +RI     A+  +   V L      ++         +   +   
Sbjct: 601 AFADRVVRRPEAESASLRIFGPLEARLTQCDRVILGGLVEGIWPPAPRSDPWLSRPMRHQ 660

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
            G+ +   +     +  + ++                       D++I+   +  +    
Sbjct: 661 LGLDLPERRIGLSAHDFAQMLGA---------------------DEVILSHAAKVAGAPA 699

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHH-PENTPLEREETIKQLM 734
              R  + +   +     +  + +    ++    +          +  P    +     +
Sbjct: 700 VASRFLHRLEAVAGAERWKAAEARGQIYLDYAHALDRPDKVVPITQPMPRPPRDARPLQL 759

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIF 794
               I   L  P          L P          L+ +       +RG  IH+ L    
Sbjct: 760 SVTAIEDWLRDPYTIYAKFILKLAP----------LDPVDMPLSAADRGSAIHEALGEFT 809

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS----------CD 844
            +      +   +      +   A   +              +    +            
Sbjct: 810 QVFAQALPDDPAAALRAIGQKHFAPLMERPEARALWWPRFLRIAHWFATWETERRLNVAG 869

Query: 845 SYSEVSVSGKINCPKKDI-IISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIA 902
             +E   +  I        ++S R D+I       F I +YKT        + +      
Sbjct: 870 VDAETRGTLSIPLDATRRFVLSARADRIERRADRTFAILDYKTGRPP--TGKQVRMGLSP 927

Query: 903 QLSIYEKILKD-----SYPNKSLVCLLIYVS--------EPKVFIIPQNKLNKAF 944
           QL++   IL++          S+   L+YV         E K+  + +++  +A 
Sbjct: 928 QLTLEAAILREGGFEGIAAGSSVSE-LVYVKLSGNNPPGEEKILELKRDRAEEAL 981


>gi|75762199|ref|ZP_00742094.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74490314|gb|EAO53635.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 602

 Score = 61.1 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 73/213 (34%), Gaps = 38/213 (17%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           + L++    +  K      I+ ++ Q+   I IDE QD++     +              
Sbjct: 153 DSLLLFAEKVFDKFP---KIKMRLTQKYQSIFIDEYQDSAASVLRMFYK---------AC 200

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
            ++   L+ +GD+ Q IY             +   +   T+       I+L ++ RS  D
Sbjct: 201 LNTKSNLYFLGDKMQQIYK------NYDGSFEEELKTLNTD-------IKLDINHRSIPD 247

Query: 270 ILTVVDKV-----FSIPENAQGLSEDSTTT--------IRHRSSRIGQVGTVQLWEQVVS 316
           I++V++ +     F    + + L               I+ R  R   +    L   +++
Sbjct: 248 IVSVLNNIYNDKGFKQNPSKKNLDIKPDHPPRIIMCDNIQERLKRECSIYPDALLLFLLN 307

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
           Q        +E +  +        +  + A  +
Sbjct: 308 QQKFASIGARELYKQFSHLERYSHAKQLSATDV 340


>gi|313890561|ref|ZP_07824189.1| ATP-dependent nuclease subunit B [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121078|gb|EFR44189.1| ATP-dependent nuclease subunit B [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 1078

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 77/671 (11%), Positives = 183/671 (27%), Gaps = 94/671 (14%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A +I   +              + KDILVL+    D          L + Y+I    
Sbjct: 308 EHVAKSIRQKLYEG----------YRYKDILVLL---GDLESYQLQIGQLFDKYEIPYYF 354

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQ------- 459
                ++ H  ++ + AL R       +   + +LK+ LF+  ED               
Sbjct: 355 GKAEAMSHHPLVQFIDALERIYGYNWRNEDILSLLKTGLFSHVEDFDLDQFEAYVQFADI 414

Query: 460 -----------------RHETETVYEYIQKFANCGISKFQHVIKYIHE-----LIHIAQF 497
                            R   +   E I +      S  + +     +     L  +  F
Sbjct: 415 NGSRKFAKPFSLNPLDHRDRRKFDLEIINRVREVIYSPLRELYSQKEQTGASFLTGLLNF 474

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
               +    +      + +       EV  V    L       ++   SL+   + ++  
Sbjct: 475 LKQVELPAKLEQLSYSQNENEQEKDLEVWKVFTTILEQFHHIFKDDIISLEHAFNLIKMG 534

Query: 558 PPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
                        + V I +    +      V+ +   S  F    +KK  I        
Sbjct: 535 MQAANYRVVPATLDVVTIKSYDLVQPHSKAFVYAIGMTSAHFPKVTLKKSLISDKERALT 594

Query: 617 GIPIWIPQSKS----RNNIVSDLIKHLKKSTQEEYNRLLY--------VGMTRASDQLII 664
              +   Q            +  +     ++  +   L          V ++     L+ 
Sbjct: 595 NQKLSSFQRFEVASHETTKKNHFMALSLFNSANQELVLSVPMQLNEVSVELSPYISLLLD 654

Query: 665 CKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPL 724
                    K        D+        + ++       ++ +E   +     + +    
Sbjct: 655 FGIPLLEKGKSQFSAMETDIGNYKSLLSQVIELNTRQIELSSEEENFWTVMLRYLKGRLA 714

Query: 725 EREETIKQLMDEQKIPKKLFS--PIKNDINEPYILNPSTIDTKGKTN-----------LE 771
           + +  + Q+    +           +    +P  L+ S +                   E
Sbjct: 715 KEDLVLPQVKKHLQTKPLSQEVIQTRFPQEKPIHLSHSALTVFYDNQYKYFLQYILGLQE 774

Query: 772 SLLSDNQTFNRGLIIHKLLQV-IFTLPEHKRKNFITSYCTK--------------NAKLW 816
                      G  +H++ +  +    +    + +     +                  +
Sbjct: 775 MESIHPDARQHGTYLHRVFERVMADATDLAFDDKVKRAIEQTNQESSFKYFYQDDAQGRY 834

Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS-Q 875
                + +  +   + +       ++ +   ++ +       K  +II G ID+I     
Sbjct: 835 SLHLLEGIAKATADIFKTHQNVHVLAQEEKFQLPI-------KDKLIIKGTIDRIDQLVD 887

Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK-SL-VCLLIYVSEPKVF 933
           Q++ I +YK+      ++        +QL  Y   LK  Y N   +   + +++ EP + 
Sbjct: 888 QSVGIVDYKSSASAF-DLSLFFNGLNSQLPTYLSALKRHYQNHIPIFGAMYLHMQEPTLD 946

Query: 934 IIPQNKLNKAF 944
           +    +L+   
Sbjct: 947 LASYPELDSKL 957


>gi|220936011|ref|YP_002514910.1| hypothetical protein Tgr7_2850 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997321|gb|ACL73923.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 579

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 130/533 (24%), Gaps = 117/533 (21%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +D++  T  L++     A  R+ +      IL+DE QDT     + + ++   F      
Sbjct: 153 DDVLPLTVSLMEH----AKFRHIVTDRFPIILVDEYQDTDK---DWVEAIQRLFL----G 201

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
           +         GD  Q IY       +                  +   I    +FRS   
Sbjct: 202 NPPSPLFGFFGDHWQKIYGNGCGRLE----------------HPQVKEIGKEANFRSVKA 245

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+  +++             D+   +    +     G                +   E  
Sbjct: 246 IVDCLNR-MRPELQQFVEDPDAIGQVSVFHTNAWTGGRQTGAHWGGDLPSEVGHDTLEGV 304

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
            +       + S      ++      ++ ++               +  + R        
Sbjct: 305 KASLTQEGWDFSPES--TKVLMLTHRLLASEQG----------YASLPSVFRYNDSFAKK 352

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFS 449
                    D                    D  +  RF    +       +L+S     +
Sbjct: 353 EHPYIAFFVDQLEP--------------ACDAFSANRFGAMFDALGGNTPLLRSQADKAA 398

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILG 509
             D         E  TV E I    N    +    I+                       
Sbjct: 399 WHDAMSQLLAIRENGTVGEVIDHLLNRRKPRLPEAIEK---------------------- 436

Query: 510 AKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH 569
               R++ +  F     + +   L    +     Y+ ++ L S L+ + P   +      
Sbjct: 437 ----RERELREFDRASGEEMPAALAEIEKLRAVRYAEIKTLRSYLDGHSPFETK------ 486

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
                   H  KG E   V +V                                  +   
Sbjct: 487 --------HGVKGAEFENVLVV-----------------------IGRGWNQYNFGEMLE 515

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
              S  I   K++  E    L YV  +R   +L +      S +  +    W+
Sbjct: 516 LAGSAAIPPGKQAAFERNRNLFYVACSRPKRRLALLFTQQLSPDAIATLERWF 568


>gi|320457795|dbj|BAJ68416.1| putative ATP-dependent nuclease subunit B [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 1098

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 70/594 (11%), Positives = 158/594 (26%), Gaps = 51/594 (8%)

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ-ESWTSYFDSL 336
           F+    ++     +     H +  +G        E +  + D   N       +S   S+
Sbjct: 208 FAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLSSIFASSASTSV 267

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                 +   R  A +I   I  +          I   D+LV     +D           
Sbjct: 268 CAMPDTTAEVRYAAASIKKFIADNP--------EISYGDVLV---TSRDLGSYQAQIASE 316

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF----NFSEDD 452
                I +       + DH     ++ L      +    S + +L+S +F    N +   
Sbjct: 317 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLNLTPTA 376

Query: 453 IFKICTQRHET--ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           I  I  Q +     TV+          + K + +I+   ++       +  +    ++G 
Sbjct: 377 IDDIENQLNSNNPATVWIDTDIPFAAHLQKIRSLIQQAADVFRPRPSATVREALGGMVGF 436

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE-LISELEQYPPTIKRAHSANH 569
                Q I         +++ F +   +   + ++         L               
Sbjct: 437 LTEYAQTIEGSAPVWTVIMNAFDDMVQQLGNDYFAEYVGIFARNLASTLAAQSIDSRPVS 496

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
                +   ++       V ++            +   +      D    +         
Sbjct: 497 ASAVDVLPMSSPLHPYRYVIVLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLE- 555

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
              + L   +++ + +E        +  A+ QL +    +  N  ++           + 
Sbjct: 556 -AWNVLSGTVERRSGQEPL-WFNGVVASATQQLSMTYPKSLRNAAQACSPYISQWETGTS 613

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
              E +   K      + E+   +              E   +L        +++     
Sbjct: 614 DTSEIIGASKRAVPTVETEYRPLDR-------------ELAYRLFTRPDYVHRVYRTHGA 660

Query: 750 DINEPYIL---NPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVIFT 795
           D +    +   + S I+T  +   E  L                   G   H +L+    
Sbjct: 661 DPSISTRVFNASVSAIETYYRNPYEYFLKYGLKVNVANAFAFDAALEGTFYHAVLEHAVN 720

Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
               + KN              A + + L+   +RL       T ++ D   EV
Sbjct: 721 AWIERHKN--ERDLNGLPPQPTAPDMQELIADYSRLDRGCNQWTVLNEDPRMEV 772


>gi|331005036|ref|ZP_08328441.1| RecB family exonuclease [gamma proteobacterium IMCC1989]
 gi|330421164|gb|EGG95425.1| RecB family exonuclease [gamma proteobacterium IMCC1989]
          Length = 921

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 71/714 (9%), Positives = 187/714 (26%), Gaps = 96/714 (13%)

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
              K      ++ + I    S+R    I+      F   + +Q                 
Sbjct: 139 EWIKHFQQRLKQLNTITAEESYR----IIGEA---FEQDQLSQESDIYLLGFDDLSPLYK 191

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
            Q+    +   + +       P+      + +S  +  +A+  AR      +++     +
Sbjct: 192 EQLEKASV--NLTTLASPNYTPKTLQRVEFDNSDAEMQAAAQWARTTVEQQADVRIGIIV 249

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLM 422
            + G+ R    +  +         P            Y +    +    L D   I   +
Sbjct: 250 PNLGQCRQQVERAFISEFEAHSFNPTTE--------RYTLPFNFSAGTPLGDTPLIAATL 301

Query: 423 ALGRFILSQ-----EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVY------EYIQ 471
            L +    +      D    V  L SP +     ++ +      + +++       + ++
Sbjct: 302 QLLKLQEQRGRSQEWDTEYLVHCLLSPFWGNYTSELERRTALVSKLQSLGTFTISGDTLR 361

Query: 472 KFANCGISKF-------QHVIKYIHELIHIAQF------CSPHDFFTLILGAKKGRQQFI 518
            +A    SK        + +  Y+++    +          P  +  + L      Q   
Sbjct: 362 YWAEKIESKLNSANENERRLFDYLNQFHQFSTSTINKGKHLPSRWIEIFLQQLDILQWPG 421

Query: 519 SRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI-----SELEQYPPTIKRAHSANHNEVR 573
            R  +       +     L +     S L  +       +L+     +        + ++
Sbjct: 422 ERTPDSQEYQQTQLWYQLLESFAGLDSVLNAVDNNTAIQQLQSMANHMPFQAKVPDSPIQ 481

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           I+ +    GL     +++    QV+         +   L  +  +P             S
Sbjct: 482 ILGILEGAGLHFSHCWVMGLHQQVWPPAPSPNSLLPIRLQREHNMPH-----------AS 530

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
            L +     +  +  R         +D +I    ++  + ++    +          +  
Sbjct: 531 SLRELAYAQSLTDNYR-------HCADTIIFSTPAHEDDGEQRLLASQL------ISDIP 577

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
             +          + W     ++   E                               + 
Sbjct: 578 LTELTTQATDDGLENWYHSLQNSRDLELIDCADAPAFTGNQLVGGAGLFKSQAENPFDSF 637

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH----KLLQVIFTLPE--HKRKNFITS 807
                 + +                   +G I+H     + Q +             +  
Sbjct: 638 VKYRLGAPLPIDAVNGFSH-------IEKGHILHNGLAAIWQQLKNQESLLALSDTALAE 690

Query: 808 YCTKNAKLWPAKEYKNLLLSITRLL-------ENPMMTTAMSCDSYSE----VSVSGKIN 856
             T+   +  +   ++    ++  L       ++ ++T  ++ +        V++     
Sbjct: 691 LITEQVNIAISDIKRHKPKHLSDPLCKIESERQSQLITQWLALEKKRPPFTVVAIEEART 750

Query: 857 CPKKDIIISGRIDQISIS-QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
                + I+ RID++         I +YKT        +        QL +Y  
Sbjct: 751 ITFNGMNINIRIDRVDQLQDGRYLIIDYKTGKSNINAWKGERPK-EPQLPLYAL 803


>gi|312139075|ref|YP_004006411.1| uvrd/rep helicase [Rhodococcus equi 103S]
 gi|311888414|emb|CBH47726.1| UvrD/REP helicase [Rhodococcus equi 103S]
          Length = 747

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 94/331 (28%), Gaps = 37/331 (11%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L  ++   +      R            +A   L       Y    + +  L + +++  
Sbjct: 421 LANRVTTLEQYVKVARPGRGVRLSRPQRIAVWKLV----EAYRRQARMDGTLSYAEVLAL 476

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
             + L+ R  +       D  ++H+++DE QD     W ++R L  +          P  
Sbjct: 477 AAESLRLRTDAGA-----DHLVDHVIVDEAQDLHATHWALLRDLVAE---------GPND 522

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           LF   D  Q IY     +P  + R                    L L++R+TA  L    
Sbjct: 523 LFISEDSHQRIYG----QPVVLGRL---------GIKIVGRSRRLTLNYRTTAQNLHFAV 569

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            + S  E      +D +T     + R      V+               +  SW +    
Sbjct: 570 SILSGAEYKDLEQDDESTAGYRSARRGPAPELVECDSAADELDKVASQVK--SWIAKGVE 627

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
               +  +         +  +   D        + +    + VL   R      + +   
Sbjct: 628 PSSIAVLTRSEAVRDQFVRALGERDVAARALDDKPVAGDCVQVLTMHRSKGMEFSRVILA 687

Query: 396 LKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
             +D  +         L      +   AL R
Sbjct: 688 GVDDAHVP----SSASLKSVPDEEQAEALLR 714



 Score = 45.7 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 28/109 (25%)

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + V+++T+H +KG+E   V L              K                  
Sbjct: 660 DKPVAGDCVQVLTMHRSKGMEFSRVILAGVDDAHVPSSASLKSVP--------------- 704

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                           +         LLYV  +RA D+LI+      S 
Sbjct: 705 -------------DEEQAEALLRERSLLYVAASRARDELIVTWSGKRSE 740


>gi|167587402|ref|ZP_02379790.1| UvrD/REP helicase [Burkholderia ubonensis Bu]
          Length = 253

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 61/213 (28%), Gaps = 38/213 (17%)

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +  ++  L   L             A  + V++MTVH AKGLE   VF+      +F 
Sbjct: 22  AQNPDTMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFAAVFITGLEEGLFP 81

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H++                                    L+    EE  RL+YV +TRA 
Sbjct: 82  HENSV----------------------------------LESDGLEEERRLMYVAITRAK 107

Query: 660 DQLIICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           ++L +    +     + + N R+ +              K++              W   
Sbjct: 108 ERLYLSFAQSRMLHGQTRYNVRSRFFDELPQHVLKWLTPKVEAGARWGGGRSDNAGWGR- 166

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
                P    E I        +P         D
Sbjct: 167 DWFARPGAGREQIVDAAVSAPLPAFANQQRAAD 199


>gi|229828349|ref|ZP_04454418.1| hypothetical protein GCWU000342_00407 [Shuttleworthia satelles DSM
            14600]
 gi|229792943|gb|EEP29057.1| hypothetical protein GCWU000342_00407 [Shuttleworthia satelles DSM
            14600]
          Length = 1199

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 72/817 (8%), Positives = 193/817 (23%), Gaps = 143/817 (17%)

Query: 249  TNAGQKFSIIELPLSFR--STADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
             N       + L  + R  S   +  +   +F       G                    
Sbjct: 259  ENRCPIEEPVCLTGNPRFASAPMLAYLEANLFRPKSRPYGKELSGLDGKETAGCSQADTK 318

Query: 307  TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
                  Q  ++ ++     +         L + +S           I   I         
Sbjct: 319  ETASCAQSDAKENASRAQGESDPKMRQIRLGRAASFRDELAFAGEEIRKKIRDQGG---- 374

Query: 367  KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR 426
                 + +D  ++     D            +   +    +    +  H  ++ +++   
Sbjct: 375  -----RYRDFAIVCANLSDYADYAGQI---FDKMDLPYYLDQEQDILFHPLVEFILSSLS 426

Query: 427  FILSQEDDLSFVCMLKSPLFNFSEDDIFKI-------------CTQRHETETVYEYIQKF 473
                   + S +  L+S L      D   +               +R  +  V  + Q+ 
Sbjct: 427  LFTEDFSEESLMQQLRSGLAGIDPSDADLLERYIHARRIRGFARYRRPFSGRVRNFSQEQ 486

Query: 474  ANCGISKFQHVIKYIHELIHIAQFCSPHD-----FFTLILGAKKGRQQFISRFGNEVIDV 528
                    + ++  I +        +             L A +  ++  +R      + 
Sbjct: 487  MLRVEQLRKGIVADISDFRQSMCEENAVTRDRALAIYAYLQAHEVEEKLEARANACRAEG 546

Query: 529  --------------LDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVR 573
                          + E L            SL +    LE     I         + V 
Sbjct: 547  DEIAASIHSRVFGLVMETLEKMSDLLGEEKMSLSDFAQLLEAGLRAISVGTVPPSFDSVV 606

Query: 574  IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
            I  +   +      ++++                   +  +                   
Sbjct: 607  IGDLERTRLEHIKTLYVLGASDAAIPRSAESSGLFSQAEREKLR-------------EKQ 653

Query: 634  DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
              +    +         LY+ +T+ S+QL++     +S+     +     ++   F    
Sbjct: 654  IDLAPGDRERAFMQRFYLYLALTKPSEQLVVSYARLSSDGSALRESYLIGLICRLFPGLG 713

Query: 694  RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                    +        A          +  E+E + ++      I + L          
Sbjct: 714  VENLEGRADLQRLVTAPAALDYLPDALRSLSEKEPSREEGQLACAIYEVLKEDKNFTDRA 773

Query: 754  PYILNPSTIDTKGKTNLESLLSDNQT---------------------------------- 779
              +   +  +       E L+                                       
Sbjct: 774  EELFKTAFSEQGQDRLSERLIKRVSGDLIQGSVSRLEQFCRCAYAYYLRYGLLLQEEEEP 833

Query: 780  ----FNRGLIIHKLLQVI---------------FTLPEHKRKNFITSYCTK--NAKLWPA 818
                 + G + H+ L+                  +  E   +    +   +   A+L   
Sbjct: 834  EIDFLDMGNLHHQTLEFFSKRMKERKLSWKEISDSDAEALLEEAFRNAVGQMERAELLEN 893

Query: 819  KEYKNLLLSITRLLENP--MMTTAMSCDSYSEVSVSGKINCPK------------KDIII 864
            +    ++  +  +L      +   ++   +                         + + +
Sbjct: 894  RRQAQVIRRMKSVLRCSIWALREQVTRGDFVPEEFEMSFGPRDQLSSMRFQLGEREKLQL 953

Query: 865  SGRIDQI--SISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYE-KILKDSYPNKS 919
            SG+ID++    + + I+  + +YK+  +   ++  + +    QL +Y    L+     + 
Sbjct: 954  SGKIDRVDCMRTPEGIYVKVMDYKSG-NQKLDLTRLYHGLQIQLVLYMSAALEKLGRGEK 1012

Query: 920  LV--CLLIYVSEPKVFII------PQNKLNKAFAEIS 948
                  L Y    + ++       P+        E+ 
Sbjct: 1013 KAHPAGLFYFHIDEPWVKSREGAGPEEIQEDILDELK 1049


>gi|258435313|ref|ZP_05689052.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A9299]
 gi|257848974|gb|EEV72957.1| DNA helicase/exodeoxyribonuclease V [Staphylococcus aureus A9299]
          Length = 1157

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 85/707 (12%), Positives = 181/707 (25%), Gaps = 162/707 (22%)

Query: 333 FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
            +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303 LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                  Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350 L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447 --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                + +D++F +            + E  +      +   + 
Sbjct: 406 SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484 VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
           VI  I               F           +  ++   E  +  L+         +Q 
Sbjct: 466 VIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542 ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                           +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526 WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
              V+LV                I                 K      +  +       Q
Sbjct: 586 KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
            +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634 MDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694 ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                              +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694 PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
           +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754 ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
           H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814 HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846 YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
            + V                                               I I G+ID+
Sbjct: 870 GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871 I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL 911
           I          + I +YK+       ++     +  Q+ +  Y  I+
Sbjct: 930 IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIV 975


>gi|320160478|ref|YP_004173702.1| hypothetical protein ANT_10680 [Anaerolinea thermophila UNI-1]
 gi|319994331|dbj|BAJ63102.1| hypothetical protein ANT_10680 [Anaerolinea thermophila UNI-1]
          Length = 672

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/391 (10%), Positives = 99/391 (25%), Gaps = 49/391 (12%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERF----SLLSSFF 73
           K    L + +  + +     +   G     K  + ++  +        +           
Sbjct: 255 KRFLVLTHNRPLNFDMQARFARLNGG----KLPENIEWFTFNGWCYHYWPRESEKWIEPI 310

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF--------IKIRDRFNTYKMFKSTLA 125
             +        + ++  +  P          D           +        + F  +  
Sbjct: 311 RIKPREQLAEEVCRKYLQDLPISTAMFLSEIDWIKDQLPMTREEYLQADRRGRGFGLSAE 370

Query: 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
                    + Y++   +  +LD+ D+     + L+   V          + + ++IDE 
Sbjct: 371 QRRRVFDAFSAYQQKLAEENLLDWGDVPQKMWNFLQDGTVVPP-------QYDVVMIDEA 423

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           Q  + +  ++++ L                LF V D  Q      G+             
Sbjct: 424 QFFAPLWMQIVKKLL---------KPGNSHLFIVADPTQGFLGRGGS------------- 461

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
            +A     +     L  S+R+T +IL     +F      +   ED  +            
Sbjct: 462 WKALGIQARGRTHTLRKSYRTTLEILQFA-TLFYRTRVTEDPEEDILSPDLLNMPNGVLP 520

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
              ++     SQ +      +           +       +++    +   I +      
Sbjct: 521 ---EILLLSSSQDEIVRVANEVKEFVSRGYPKKHLLLLHTSQQGVTALVQAINSRLGKDA 577

Query: 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
            +          V V        +     FL
Sbjct: 578 ARDAKNDYPGDYVRVTTLNAGAGLESPIVFL 608


>gi|294790510|ref|ZP_06755668.1| conserved hypothetical protein [Scardovia inopinata F0304]
 gi|294458407|gb|EFG26760.1| conserved hypothetical protein [Scardovia inopinata F0304]
          Length = 1498

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 72/289 (24%), Gaps = 23/289 (7%)

Query: 483 HVIKYIHELIHIA--QFCSPHDFFTLILGAKKGRQQF--ISRFGNE------VIDVLDEF 532
             +  I     I+        D             ++  ++R   E        + LD  
Sbjct: 642 DFLDLIDRCRRISLNPRLRVIDIVQSAWTQSGQADRWKNLARQSEEQTARAGANEWLDTL 701

Query: 533 LNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS-----ANHNEVRIMTVHTAKGLESPV 587
           +      E     SL  +   ++        A S        N V ++T   A G     
Sbjct: 702 VRLFTEAEATQ-KSLTSIDDFMDHVSGQDIAADSLARKAPVENAVTVLTPAAAAGEHWDY 760

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           V+LV     ++ +  ++          D  +       + R        +    +  +  
Sbjct: 761 VWLVHVQDGIWPNLTLRDQLFAADDLTDAML-------QGRIFEQDQRYREHVSAVLQNE 813

Query: 648 NRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKD 707
            +   + +TRA   L I   +N  +        +        H  E  ++ +   S    
Sbjct: 814 KKSFLIAVTRARKALSISAVANDKDSPSDFFAVYMPQGIVPAHRSESSQRSEKAGSEADS 873

Query: 708 EWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI 756
                                 +   + ++ +     +P     +    
Sbjct: 874 VSYPVSDCPVSDRGLVARARSLVSAELAQRLVSGASGAPGAPGTSPVQT 922



 Score = 51.1 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 67/220 (30%), Gaps = 28/220 (12%)

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMF--------- 120
           ++   T       ++ ++++N    D  + L+       ++       K           
Sbjct: 127 ANLAYTDSGQTTSDLFSRQLND---DFADALRSLFARMNEVGAHHGVQKTIVNLAGNGSN 183

Query: 121 KSTLASLTLAKYLNAHYEEAKKKNCV------LDFEDLIINTNDLLKKRDVSAWIRYKID 174
                +  +A  L   Y +A ++         +D   L+I     L +   +  +     
Sbjct: 184 LRLRYAWEVAFALRQEYAQAVEELNERRGKFNVDSSYLLIQAQRSLMRLQEAGQLDRIQQ 243

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
                +++D+ QD +         L    F+G+   S    +       ++  +F G+ P
Sbjct: 244 FLPQVVIVDDAQDLT---------LAAAAFLGQLQASGASLILLT-CPDEAAQTFRGSYP 293

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
           + +    +     A         +    S RS   +   +
Sbjct: 294 EYLSTILKKEPFFAQEQTLTTPSVGGSQSNRSLDALAAAI 333


>gi|325996194|gb|ADZ51599.1| ATP-dependent DNA helicase [Helicobacter pylori 2018]
          Length = 260

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 69/245 (28%), Gaps = 49/245 (20%)

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFT 505
            ++IF +         + +           K        +     L   A   SP     
Sbjct: 34  FEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKTLSDFFILYTKAPTHSPSALIK 93

Query: 506 LILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNEQNSY--SSLQELISEL--E 555
            IL      Q F +R   E     D    EF  L    R  +     SSL +    L   
Sbjct: 94  HILE-STFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRF 152

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                I  + +     V +++VH +KGLE   ++++D     F +  +            
Sbjct: 153 LNGTLIGSSEATQGEGVNLLSVHASKGLEFKDIYIIDLMEGRFPNHKLMNTGGG------ 206

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                        EE  RL YV +TRA + L +    N   E  
Sbjct: 207 ----------------------------IEEERRLFYVAITRAKENLWLSYAKNELRENA 238

Query: 676 SNQRT 680
             +  
Sbjct: 239 KPKEH 243


>gi|329926775|ref|ZP_08281183.1| hypothetical protein HMPREF9412_6244 [Paenibacillus sp. HGF5]
 gi|328938975|gb|EGG35343.1| hypothetical protein HMPREF9412_6244 [Paenibacillus sp. HGF5]
          Length = 725

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q  +HI+IDE QD S  Q  V+                  +   +GD  Q I+++ G   
Sbjct: 479 QRFDHIVIDEAQDFSPFQVAVLDLFV-----------RGHSFTILGDLSQGIHAYRG--V 525

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
                   + ++  T          L  S+RST +I+   + +   
Sbjct: 526 HAWEEMSSLFKEEETAY------FALTRSYRSTMEIIEFANGILEK 565


>gi|315656643|ref|ZP_07909530.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492598|gb|EFU82202.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 581

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/521 (12%), Positives = 127/521 (24%), Gaps = 125/521 (23%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             L   D++     +L      A  R         ILIDE QD+        + +   F 
Sbjct: 150 HYLHHNDVLKLFCTMLDN----AKFRRVFSDNYPLILIDEYQDS-------YKPIITRFI 198

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                          GD  Q+IY  + A       + +  +K +              +F
Sbjct: 199 NFFIAEGIGPQFGFFGDAWQTIYQTNNACGAIEHSKLQEIKKGS--------------NF 244

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS   I+ +++ +                 +  +S+     G V +            + 
Sbjct: 245 RSAPRIVKLLNDI--------------RPDLPQQSAIDNFEGEVVV------VTCDDFSG 284

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           ++ +  ++ D LP E   S L + ++  I   +  D              +I +L+   K
Sbjct: 285 ERRTERTFKDDLPAEELKSRLFQ-LSEHIKKNVSKDE-------------NIKILMITHK 330

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                    R L        + +D                   +            L + 
Sbjct: 331 VLATQQGYERLL-------AIIDDGLRDKQDPF---------LLFFMNTVEPIYEALSTS 374

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                 D +        +                 K++     + +  +       +   
Sbjct: 375 NMQLLFDTLGIRRYPITKK------------ADKMKWKEFESQLKKARNGRAIDVINTIV 422

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              L               +  D +              YS  +  I  L          
Sbjct: 423 ETKLVPIPSLVDGYYHLYFDAPDTIYGLDATIQDVLDLDYSQFKAAIEFLYPESE----- 477

Query: 565 HSANHNEVRIMTVHTAKGLESP-VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                      T H  KG E   VVF++  G   +  +    M                 
Sbjct: 478 ---------FSTEHGVKGEEYDNVVFVISKGWNQYQFETYSPMITGKVPIPVG------- 521

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                           K+++ E    L YV  +R   +L +
Sbjct: 522 ----------------KEASYERNRNLFYVCCSRPKKRLFL 546


>gi|298482316|ref|ZP_07000503.1| ATP-dependent DNA helicase rep [Bacteroides sp. D22]
 gi|298271603|gb|EFI13177.1| ATP-dependent DNA helicase rep [Bacteroides sp. D22]
          Length = 687

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 38/174 (21%)

Query: 142 KKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           +KN +L++ DL  +   +  L   +  +++         H+LIDE+QD S IQ++VI+ L
Sbjct: 437 RKNRILEYADLAPLAYLHIALNGNNAQSYV--------KHLLIDEMQDYSPIQYKVIQKL 488

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSI--YSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        P     +GD  QS+  Y    A+       ++              I
Sbjct: 489 Y------------PCRKTILGDTSQSVNPYGSSTAD-----MIQKAFAT--------GEI 523

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGL-SEDSTTTIRHRSSRIGQVGTVQL 310
           ++L  S+RST +I +   K+    E    +   +    +  +++     G   L
Sbjct: 524 MKLCKSYRSTFEITSFAQKIQPNNELEPIMRHGEHPKILPFKNTEEEIQGIADL 577


>gi|293371806|ref|ZP_06618216.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292633258|gb|EFF51829.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 687

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 38/174 (21%)

Query: 142 KKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           +KN +L++ DL  +   +  L   +  +++         H+LIDE+QD S IQ++VI+ L
Sbjct: 437 RKNRILEYADLAPLAYLHIALNGNNAQSYV--------KHLLIDEMQDYSPIQYKVIQKL 488

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSI--YSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        P     +GD  QS+  Y    A+       ++              I
Sbjct: 489 Y------------PCRKTILGDTSQSVNPYGSSTAD-----MIQKAFAT--------GEI 523

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGL-SEDSTTTIRHRSSRIGQVGTVQL 310
           ++L  S+RST +I +   K+    E    +   +    +  +++     G   L
Sbjct: 524 MKLCKSYRSTFEITSFAQKIQPNNELEPIMRHGEHPKILPFKNTEEEIQGIADL 577


>gi|237722801|ref|ZP_04553282.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 2_2_4]
 gi|229447323|gb|EEO53114.1| ATP-dependent DNA helicase replicase [Bacteroides sp. 2_2_4]
          Length = 687

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 38/174 (21%)

Query: 142 KKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           +KN +L++ DL  +   +  L   +  +++         H+LIDE+QD S IQ++VI+ L
Sbjct: 437 RKNRILEYADLAPLAYLHIALNGNNAQSYV--------KHLLIDEMQDYSPIQYKVIQKL 488

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSI--YSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
                        P     +GD  QS+  Y    A+       ++              I
Sbjct: 489 Y------------PCRKTILGDTSQSVNPYGSSTAD-----MIQKAFAT--------GEI 523

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGL-SEDSTTTIRHRSSRIGQVGTVQL 310
           ++L  S+RST +I +   K+    E    +   +    +  +++     G   L
Sbjct: 524 MKLCKSYRSTFEITSFAQKIQPNNELEPIMRHGEHPKILPFKNTEEEIQGIADL 577


>gi|294674329|ref|YP_003574945.1| hypothetical protein PRU_1650 [Prevotella ruminicola 23]
 gi|294472070|gb|ADE81459.1| conserved hypothetical protein [Prevotella ruminicola 23]
          Length = 879

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/421 (11%), Positives = 109/421 (25%), Gaps = 76/421 (18%)

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           ++    T    H      +++M V   + L+   V L+                I  +L 
Sbjct: 427 VQLISTTSIPFHGEPAEGIQVMGVLETRNLDFDHVLLLSCNEGNMPRGVNDTSFIPYALR 486

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              G+     +     +    L++                   RA D  I+  ++N +++
Sbjct: 487 KAYGLTTIDYKVSIYEHYFHRLLQ-------------------RAKDVTIL--YNNATSD 525

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQL 733
            K+ + + + +     +      +        +         T    +    R       
Sbjct: 526 GKTAEMSRFMLQLMVENKIPITFQTLKAGQTPQLHAPQAINKTPEVMSQLQRRFAKDAGG 585

Query: 734 MDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI 793
           +    I   L   ++        L         K    +          G I HK  Q++
Sbjct: 586 ISPTAINTYLRCQLRFFYRYVCEL---------KEPDSTEDDLIDNRLFGNIFHKAAQLV 636

Query: 794 FTL---PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI---------------TRLLENP 835
           +      +            K          + +                    +L+   
Sbjct: 637 YEYLVATKATITTMAIDDLLKEEVTIERVVDEAIKQEFFHINDASRPLPPLDGLQLINRE 696

Query: 836 ----MMTTAMSCDSYSEVSV-----SGKINCPKKDIIISGRIDQIS-ISQ-----QNIFI 880
                +   +                  +N    +  I+G ID++  I+      + I +
Sbjct: 697 VIIKYLRQLL-ECDRRLAPFSILGLEKPVNITLNNQYIAGVIDRLDSITDPETGLERIRV 755

Query: 881 FEYKTH----HHVPQ-----EIEHIPYT--HIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
            +YKT       +P        E I     +  Q  +Y  I++   P   +   L+++  
Sbjct: 756 VDYKTGSRQMKAMPDVAAIFSQEAIKDHSDYFLQTLLYAHIVRSKTPQM-VSPCLLFIQH 814

Query: 930 P 930
            
Sbjct: 815 A 815


>gi|189466028|ref|ZP_03014813.1| hypothetical protein BACINT_02392 [Bacteroides intestinalis DSM
           17393]
 gi|189434292|gb|EDV03277.1| hypothetical protein BACINT_02392 [Bacteroides intestinalis DSM
           17393]
          Length = 965

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/380 (12%), Positives = 102/380 (26%), Gaps = 72/380 (18%)

Query: 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNN 630
            +++M V   + L+   + ++                I  +L    G+     ++     
Sbjct: 526 GMQVMGVLETRNLDFRNLIMLSLNEGQLPKAGGDSSFIPYNLRKAFGMTTIEHKNAV--- 582

Query: 631 IVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFH 690
                    +   + E   LLY                NT++E  +       M+     
Sbjct: 583 ---YAYYFYRLIQRAENVTLLY----------------NTASEGLNRGEMSRFMLQFLVE 623

Query: 691 NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKND 750
           +   + +  L    +                T       + +  D  + P+ LFSP   +
Sbjct: 624 SPHTISREYLEAGQSPQSGREIRVEKTPEIIT------RMHERYDVNRHPRSLFSPSALN 677

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFIT 806
                 L        G    + + ++  +   G I H+  ++    +    +  RK  + 
Sbjct: 678 TYLDCRLKFYYRYVAGLKAPDEVSAEIDSALFGTIFHRAAELVYKDLTANGKEIRKEDLD 737

Query: 807 SYCTKNAK----------------------------LWPAKEYKNLLLSITRLLENPMMT 838
                + K                            L  AK   + L  + R   +    
Sbjct: 738 QVLRNDIKLQNYVDIAFKEEFFHVALTEKPEYNGTQLINAKVITSYLRQLLR--NDLQYA 795

Query: 839 TAMSCDSYSEVSVSGKINCPKKDIIIS--GRIDQISISQQNIFIFEYKTHHHVPQ----- 891
                    +V+   +I   +  + ++  G ID+I      + I +YKT           
Sbjct: 796 PFFMEGMEKKVTEIIEIETSQGKLALNIGGTIDRIDSKDDTLRIVDYKTGGSPKTPENIK 855

Query: 892 ---EIEHIPYTHIAQLSIYE 908
                      +I Q  +Y 
Sbjct: 856 QLFTPADGRPNYIFQTFLYA 875


>gi|302534745|ref|ZP_07287087.1| helicase [Streptomyces sp. C]
 gi|302443640|gb|EFL15456.1| helicase [Streptomyces sp. C]
          Length = 780

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 86/275 (31%), Gaps = 44/275 (16%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
              P  +   ++   + +  +G  +  + A  L+ A       E        FL      
Sbjct: 397 LLRPRARKLLLDALYAKTGASGRHSDPELAAELRSAFDEDISTE------DDFLGFLNAW 450

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA------------SLT 128
              +  + +     D + +L +     +  R+     +  +   A             L 
Sbjct: 451 WPELTPRRVLAAMADER-RLGRWSRRDLNPRETRQLARSLRRVGADGSGPLSVHDVALLD 509

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDE 184
               L       K+K   LD  D +    +L+  R+ + W R +       E  H+++DE
Sbjct: 510 ELNQLLGAPARQKRKR-ELDPLDQLSGLEELMPTREETQWERAERIAAERTEYAHVIVDE 568

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD + +QW ++                  T   VGD  QS       +P          
Sbjct: 569 AQDLTPMQWRMV-----------GRRGRTGTWTVVGDPAQS----SWTDPDEAAA----- 608

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
            +      +      L +++R+ A++  V  +V  
Sbjct: 609 ARDEALGSRPRRRFTLTVNYRNPAEVARVAARVLE 643


>gi|167760228|ref|ZP_02432355.1| hypothetical protein CLOSCI_02601 [Clostridium scindens ATCC 35704]
 gi|167662111|gb|EDS06241.1| hypothetical protein CLOSCI_02601 [Clostridium scindens ATCC 35704]
          Length = 581

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 25/161 (15%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +D++     LL      A  R+    +   ILIDE QD+        + + + F      
Sbjct: 155 DDVLKLFCLLLDN----AKFRHVFAGKYPLILIDEYQDS-------YKPIIDRFINFFIA 203

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                     GD  Q+IY  + A                       +II+   +FRS   
Sbjct: 204 EKKGPQFGFFGDAWQTIYQSNKACGLIENE--------------NLAIIKKGSNFRSAPR 249

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQL 310
           I+ +++ +         +       I             + 
Sbjct: 250 IVQLLNDLRPDLPQTSAIDNFDGEVIVITCDDYTGPRRTER 290


>gi|148381283|ref|YP_001255824.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
 gi|148290767|emb|CAL84898.1| putative ATP-dependent DNA helicase [Clostridium botulinum A str.
           ATCC 3502]
          Length = 709

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 19/181 (10%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +   EI HI+IDE QD S +Q+ V++ LT+            +++  VGD  Q       
Sbjct: 489 RYRNEIKHIVIDEAQDYSFLQFVVLKELTDC-----------QSITIVGDVNQRTLPCKD 537

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             P   L         +           L  S+RST +I+   +K     +    + E  
Sbjct: 538 EVPMLCL--------DSVFNRVDVEYFNLDKSYRSTKEIIEYANKHLKTNKIVPLVREGD 589

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   +    +  V  +   +     +      +       +  E    +    I  
Sbjct: 590 PVKEVTVKNSREAIDKVNYYLSYLENKGYENIAIITTTLEQGKVIGSELKKQMYINLIER 649

Query: 352 T 352
            
Sbjct: 650 E 650


>gi|323489924|ref|ZP_08095146.1| ATP-dependent nuclease subunit B [Planococcus donghaensis MPA1U2]
 gi|323396431|gb|EGA89255.1| ATP-dependent nuclease subunit B [Planococcus donghaensis MPA1U2]
          Length = 1158

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 112/906 (12%), Positives = 241/906 (26%), Gaps = 166/906 (18%)

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
                 F   +   +L +     ++  ++      F D I        +  V       I
Sbjct: 84  RREVDTFGYRMLIRSLLEDNREEFQLFRRAAGKRGFTDQIEQLVKEFARYCVDCGELNAI 143

Query: 174 DQEINHI-------LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD--EKQ 224
               + +       L+D+ QD  LI  E+   L + F   +   +         D  +  
Sbjct: 144 --RFSLVEAGAPKTLLDKAQDLELILTEIENRLGKVFVDSEGHLALLSEKIPHSDLIKSS 201

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNA-GQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           +IY         V    R  +         K   I LP+  ++  +    +    +   +
Sbjct: 202 TIYIDG-----FVTFTAREYEILFELMKHAKSVTIALPMDEKTDPNDEQSLFYQSANTAH 256

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                          S  +         E    +      P Q+       SL + S+  
Sbjct: 257 RLTEQAAKEGIDIDNSVYLALPRRFMNPELEHIERHFDDFPIQKIQGQGNVSLVEASNRR 316

Query: 344 ILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                +A  I + +              +  +I +L R      +   L   + + Y+I 
Sbjct: 317 AEMHAVARAIRDQVRNG----------FRYNEIAILYR---QPEIYDELIHTIFSQYEIP 363

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF-----------NFSEDD 452
              + +  +  H  I+   ++   ++S     S    +K+ LF                +
Sbjct: 364 YFISQKKSMLHHPLIEFSRSVLESVVSNYSYESIFRAVKTDLFFPQGPATKWRERSDLLE 423

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512
            F I    +      E    +      +F   I+   EL    +  +  D     L   K
Sbjct: 424 NFVIANGIYGERWFDEKRWFYKKYRGLEFHTSIQTDEELAAQVELHAVRDLIREPLAQLK 483

Query: 513 GRQQFISRFGNEVIDVLDEFLNF---------TLRNEQNSYSSL------QELISEL--- 554
            + +     G ++ + L  F+               E++ +  L      Q     +   
Sbjct: 484 EQLKLSKT-GRDIAESLFLFIEKMDVYAKIQDLREREESEHRLLAATEHEQAWNQWVGVL 542

Query: 555 ----------------------EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
                                 E +          + ++V +  +  A+ ++   VF+V 
Sbjct: 543 DQFVLMFGEKEVDLPTAVKILDEGFETLEFSRIPPSLDQVMVSKIDLARLMDIKSVFVVG 602

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
               V   +  +   +  +  +      +              +    K    +   ++Y
Sbjct: 603 ANDGVLPKRIEQDGLLTDTDREWFAQIGFE-------------LAPTSKMRLMDETYMVY 649

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND---ERVKKIKLTNSINKDEW 709
              T ASD L +         K      +   + D    D     +   +L +    +  
Sbjct: 650 RAFTSASDLLTVSFPIADEEGKALLPSLYIQKLKDMLSIDTVPAVIDPEELVDVSPMEYI 709

Query: 710 IAYEWSTHHPENTPLEREETI---------KQLMDEQKIPKKLFSPIKNDINEPYIL--- 757
                S  +  +     E +          ++      I  ++ SPIK +  +P      
Sbjct: 710 SHPRASLAYLTSQLRSGELSAEWRAVYHYYEEDPFWSSIINRILSPIKPNKADPLREAIA 769

Query: 758 ----------NPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFT- 795
                     + S ++T                 E           G + H  ++ I   
Sbjct: 770 EPLYGTPISSSVSRVETYYGCPFAHYVAYGLRLEERSQYKLAAPAMGDLFHAAIKWISDE 829

Query: 796 --LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT------RLLEN------PMMTTAM 841
                    +     C   AK    +     +  I       R +++            +
Sbjct: 830 VLRLGISWSSLTQKQCQNLAKEAIEQLSPYFVNHILISSHRYRYIQHKLEGIIRQTAYML 889

Query: 842 SCDSYSE--VSVSGKINCPKKDII--------------ISGRIDQISISQ--QN--IFIF 881
           S  +     V ++ ++    K+ I              + GRID+I  +       + I 
Sbjct: 890 SKHAKVSGFVPIALEVGFGPKETIPPLEISLDRGRKMNVRGRIDRIDSTDIHGKPYLRIV 949

Query: 882 EYKTHH 887
           +YK+  
Sbjct: 950 DYKSSK 955


>gi|255013470|ref|ZP_05285596.1| hypothetical protein B2_06150 [Bacteroides sp. 2_1_7]
          Length = 959

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 137/437 (31%), Gaps = 76/437 (17%)

Query: 547 LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +      L++   TI         + ++IM V   + L+   + ++     +F  +    
Sbjct: 501 IDTFFRLLKRVTDTITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAAN 560

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             I  +L    G+P +      ++++ +                  Y  + RAS   ++ 
Sbjct: 561 SFIPYNLRRGFGLPTYEH----QDSVWAYH---------------FYRLIERASHVSLLY 601

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              +   +     R  + + Y           +   +            S+  P     +
Sbjct: 602 DTRSNGLQTGEVSRFVHQLHYHYEVPMRDKLVVYNVS------------SSKTPPLAVPK 649

Query: 726 REETIKQLMDEQK--IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
           RE+ +++L   +K        S I   ++ P     S ++   +    S   ++     G
Sbjct: 650 REDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSVVEGIREEEEVSETIESD--VFG 707

Query: 784 LIIHKLLQVI----------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI--TRL 831
            I+HK+++ +            L +  RK+                    ++ S+     
Sbjct: 708 SILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIARAFASEFFKTEVVRSLTGQNY 767

Query: 832 LENPMMTT----AMSCDSY--------SEVSVSGKINCPK-KDIIISGRIDQISISQQNI 878
           L   M+       +  D          SE  ++G I+     +I + G ID++   +  I
Sbjct: 768 LIGEMIRKYVEKILERDGKLTPFVYIESERKINGLISLSDYSEIRLKGFIDRVDEVRDAI 827

Query: 879 FIFEYKTHHHVP---------QEIEHIPYTHIAQL----SIYEKILKDSYPNKSLVCLLI 925
            I +YK+               + E      + Q+     +Y  + ++    K++   + 
Sbjct: 828 RIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMYCWMYAHLTEN--KGKTIQPGIY 885

Query: 926 YVSEPKVFIIPQNKLNK 942
           YV          +  ++
Sbjct: 886 YVRSLFADPFDPSVYHR 902


>gi|253700191|ref|YP_003021380.1| superfamily I DNA and RNA helicase-like protein [Geobacter sp. M21]
 gi|251775041|gb|ACT17622.1| superfamily I DNA and RNA helicase-like protein [Geobacter sp. M21]
          Length = 629

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 72/231 (31%), Gaps = 28/231 (12%)

Query: 49  KAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFI 108
           +  T    S T         L + F       +K+          P L  K  K   +  
Sbjct: 284 RVDTYSAWSLTALAALGVHSLKTSFDDPFGAQKKS-------SMMPALLAKYVKETAKIE 336

Query: 109 KIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK--KKNCVLDFEDLIINTNDLLKKRDVS 166
            + D +          A    +          K   K  VL F D+ I       +R   
Sbjct: 337 PVTDLWRFLMQEYVVAALFPDSGEGFQREAHRKFEAKERVLSFSDISILLRLAQLRRPAG 396

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
             I   ++   +HI++DE QD S +          +        S  R++    DEKQ I
Sbjct: 397 TVILGALNA-YDHIVVDEAQDLSSL----------ELRTIVAATSPARSITICADEKQQI 445

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
            SF  ++    +  +           Q      L +S+R   +I+ +  +V
Sbjct: 446 LSFLDSQGFSSVMAQ--------LHSQGLEKENLTVSYRCPKEIVDLAAQV 488


>gi|168206717|ref|ZP_02632722.1| putative helicase [Clostridium perfringens E str. JGS1987]
 gi|168211697|ref|ZP_02637322.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
 gi|170661846|gb|EDT14529.1| putative helicase [Clostridium perfringens E str. JGS1987]
 gi|170710348|gb|EDT22530.1| putative helicase [Clostridium perfringens B str. ATCC 3626]
          Length = 706

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 28/171 (16%)

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDV 165
              +I       +       S      +   +   KK+  + D   ++     L      
Sbjct: 430 RIREIVKEVMDSRAKLDRWISREDVLDIYDRFNGNKKEYTINDLAPILYLAIKL------ 483

Query: 166 SAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS 225
                 K  ++  H++IDE QD S +Q++V+R LT             +    VGD  Q 
Sbjct: 484 ---EGKKATKDYRHVVIDEAQDYSPLQFKVVRELTG-----------TKYFTVVGDVNQR 529

Query: 226 IYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
           +  +  ++   ++   +I      +      I  L  S+RST +I+   +K
Sbjct: 530 LIKY--SDLAPMMELGKIFDDVNPD------IYNLNKSYRSTYEIMEYANK 572


>gi|325847083|ref|ZP_08169909.1| hypothetical protein HMPREF9246_1098 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481055|gb|EGC84100.1| hypothetical protein HMPREF9246_1098 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 104

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
              + ++           +           +  ++G+ID +   + +I + ++KT  +  
Sbjct: 3   FFNSKIIKDIKEKSPL--IRKEESFLRKIDNFYVNGQIDIMFEFEDHIILMDFKTDSYKR 60

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
           +        +  QL IY+  ++++   K     + +
Sbjct: 61  EGF------YDKQLEIYKDSIEEALGKKVSKSYIYW 90


>gi|271969588|ref|YP_003343784.1| hypothetical protein Sros_8396 [Streptosporangium roseum DSM 43021]
 gi|270512763|gb|ACZ91041.1| hypothetical protein Sros_8396 [Streptosporangium roseum DSM 43021]
          Length = 293

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 16/191 (8%)

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYC----TKNAKLWPAKEYK 822
                         + G+ +H  L   +  P  +R     +        N     A++  
Sbjct: 37  DRPSPQKGPPWAHNSVGVSVHNALAAWWREPYARRTPVTAAVLVTSGWINEGFRDAEQSA 96

Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
                   +        ++       V V   +      I +SGR+D++      + + +
Sbjct: 97  AWRDRAREM--TAGYVASLDPSDE-PVGVERTVAAKTSVIAVSGRVDRLDRRGDELVVVD 153

Query: 883 YKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS--YPNKSLVCLLIYVSEPKVFIIPQNKL 940
           YKT    P   +    +    L++Y          P   +   L ++    +        
Sbjct: 154 YKTGRR-PLTADDARSSLA--LAVYAVASSRVMHRPCHRVE--LHHLPTGTIAEWEHT-- 206

Query: 941 NKAFAEISTKI 951
           + + A   ++ 
Sbjct: 207 DASLARHLSRA 217


>gi|257386624|ref|YP_003176397.1| UvrD/REP helicase [Halomicrobium mukohataei DSM 12286]
 gi|257168931|gb|ACV46690.1| UvrD/REP helicase [Halomicrobium mukohataei DSM 12286]
          Length = 613

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 34/161 (21%)

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +   K  N +  F D++                   +   + +++IDE QD + +Q+
Sbjct: 191 IRAWRTYKGDNDLTGFADMLERVKQ------------RSLLPNVEYLIIDEFQDITTLQY 238

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
           +V                    +   GD+ Q +Y++ GA+P  +L E     +       
Sbjct: 239 DVYEEW----------KPRMTKILIAGDDDQVVYAWQGADPDLLLEEDVDVDE------- 281

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                 LP S+R  + IL VV++     E  Q    +    
Sbjct: 282 -----VLPNSYRLPSSILNVVNREVRHIEKRQEKDLNPRKE 317



 Score = 38.0 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 16/98 (16%)

Query: 568 NHNEVRIMTVHTAKGLESPVVFL-VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           + ++VR+ T+H+AKG E+  VF+  D   +V      +       +  D           
Sbjct: 491 DADQVRLGTIHSAKGREADHVFVGTDLTEKVVEQMAAQVEQNDRHVPGDEEFTKHTDPIP 550

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           +                 +   R+ YVGM+RA ++L++
Sbjct: 551 TLT---------------DNERRVFYVGMSRARERLVL 573


>gi|239636507|ref|ZP_04677509.1| ATP-dependent nuclease subunit B [Staphylococcus warneri L37603]
 gi|239597862|gb|EEQ80357.1| ATP-dependent nuclease subunit B [Staphylococcus warneri L37603]
          Length = 1156

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 87/698 (12%), Positives = 187/698 (26%), Gaps = 151/698 (21%)

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
              +       +  +   I+ +     I  + +   ++ +DI +L R      L   +  
Sbjct: 294 QKSEGFIDIFESSSMREEINEIARQ--ILKDTRDNQLRFQDIAILYRDASYADLFESIL- 350

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL--------- 445
                Y+I    + +  +T H  ++ + +L   I S     + + +LK+ +         
Sbjct: 351 ---PLYQIPFNIDTKRSMTHHPIMEMIRSLIEVIQSNWHINAMMRLLKTNVLTDQFKNST 407

Query: 446 ------------FNFS-----EDDIFKICTQRHETETVYEYIQKFANCGISKFQ---HVI 485
                                +D+IF I   R      ++  Q+  +      +    VI
Sbjct: 408 HLIDLLENFAIERGIYGKKWLDDEIFNIENFRKMGRKEHQLTQEERDTFEQVVKLKTDVI 467

Query: 486 KYIHELIHIAQF-CSPHDFFTLILGAKKG----------RQQFISRFGNEVIDVLDE--- 531
             I           +  DF T    + +           R    +   +E  + +D+   
Sbjct: 468 DKILHFEQAMNEGETVRDFATAFYESMEYFELPNHLMTERDMLDNDGYHEQAEEIDQIWN 527

Query: 532 -----FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLES 585
                  +     E  +  SL   +   +     ++        ++V I T+  AK    
Sbjct: 528 GLIQILDDLVTVFETENM-SLSRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNK 586

Query: 586 PVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE 645
             +FLV                I                 K         +       Q 
Sbjct: 587 KHIFLVGMNDGSMPQPISSSSLISDDE------------KKLFEENAQIELSPTSDILQM 634

Query: 646 EYNRLLYVGMTRASDQLI----ICKHSNTSNEKKSN-----------------------Q 678
           +   + Y+ M+RA+ ++     +   S    E                            
Sbjct: 635 DEAFVCYIAMSRATSKVTFSYSLMGASGDEKEMSPFLAQIKDIYQDLNAINIHQMHLAQP 694

Query: 679 RTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQK 738
            +  + V+ +  N     +  L   I  D WI         E+   + +  I  L  + +
Sbjct: 695 MSLIEHVHQTKINLFESLRAWLDEEIVADTWIDAYQVMRDDEHLNKDLDYLITSLTYDNE 754

Query: 739 IPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIH 787
             +   +  ++   +    + S  +   +              E    + Q F+ G I H
Sbjct: 755 TTQLSETLAQDLYGKTINASVSRFEGYQQCPFKHYASHGLRLNERTKYELQNFDLGDIFH 814

Query: 788 KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSY 846
            +L+ I      +          K  K    +  + +L  +   LL +      +S    
Sbjct: 815 SVLKYISD----RINGDFKHLDQKKIKALTTEALETILPKVQFNLLNSSAYYRYLSRRIG 870

Query: 847 S-------------------EVSVSGKI---NCPKKDII-------------ISGRIDQI 871
           +                                   ++I             I G+ID+I
Sbjct: 871 AIVETTLNALKYQGDYTKFKPQQFETGFRKKPKSDDELIAQSLTTKQGVPINIRGQIDRI 930

Query: 872 S---ISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLS 905
                  Q+   I +YK+       ++     +  Q+ 
Sbjct: 931 DTYTKDNQSYVNIIDYKSS-ESSATLDLTKVYYGLQMQ 967


>gi|144899272|emb|CAM76136.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 316

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/149 (10%), Positives = 45/149 (30%), Gaps = 17/149 (11%)

Query: 769 NLESLLSDNQTFNRGLIIHKLLQV--------IFTLPEHKR----KNFITSYCTKNAKLW 816
            L  + +D    + G ++H+ ++         +    E K     +        +     
Sbjct: 17  ALPEIDADPGAADYGSLVHEAVEQFLLAYPQSLPDDAEAKLLAVGEAVFAQALERPGVWA 76

Query: 817 PAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI-SISQ 875
                   +       E            ++E+  + ++  P    ++  R D++  +  
Sbjct: 77  FWWPRFRAVARWLAAHEKKRRPEL--AAIHTEIKGALEMEGPAGPFLLHARADRVDVLKD 134

Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
             + + +YKT        + +   +  QL
Sbjct: 135 GTLALIDYKTGQPP--SPKEVAAGYAPQL 161


>gi|282916217|ref|ZP_06323979.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            D139]
 gi|282319657|gb|EFB50005.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            D139]
          Length = 1158

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 92/752 (12%), Positives = 197/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I          +    F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I  +  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGMMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQLVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLDDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 1020


>gi|167957364|ref|ZP_02544438.1| DNA-dependent ATPase I and helicase II [candidate division TM7
           single-cell isolate TM7c]
          Length = 288

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 25/163 (15%)

Query: 770 LESLLSDNQTFNRGLIIHKLLQ----------VIFTLPEHKRKNFITSYCTKNAKLWPAK 819
           L    + N     G  IH  LQ           +      +   F               
Sbjct: 48  LHFPAAKNSAAAYGTAIHSSLQQTHCLFNANHQLP--STEQILQFFQKSLESQHLPADDF 105

Query: 820 E--YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISIS--Q 875
           +        ++T  +      +       +E+  S +      +  ++G++D + I    
Sbjct: 106 QLYLDKGQSALTTFINTK--ASDFHDTDLAELDFSNQ-GVIIGETKLTGKLDVVDIDKQN 162

Query: 876 QNIFIFEYKTHHHV-----PQEIEHIP-YTHIAQLSIYEKILK 912
           + IF+ +YKT           + E I  + +  QL  Y+ +++
Sbjct: 163 KTIFVTDYKTGKPSHSWKGSADYEKIKLHKYRQQLMFYQLLVE 205


>gi|116688231|ref|YP_833854.1| hypothetical protein Bcen2424_0207 [Burkholderia cenocepacia
           HI2424]
 gi|116646320|gb|ABK06961.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
          Length = 578

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 71/582 (12%), Positives = 144/582 (24%), Gaps = 137/582 (23%)

Query: 87  QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
           +   K+   L E +   Q+   ++        +  S                  ++    
Sbjct: 102 RGFQKQLRSLVEAMPHWQERLAEVGGTLGARMVEYSLGH------------RSIREDRVS 149

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +  +D++  T  L++        R  +      IL+DE QDT     + + ++   F   
Sbjct: 150 IHHDDVLPLTISLMEH----LKFRRMVADRFPIILVDEYQDTDR---DWVEAIKRLFLS- 201

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
              +         GD  Q IY       +                 +  + I    +FRS
Sbjct: 202 ---NPDGPLFGFFGDHWQKIYGDGCGRLE----------------HESVTEIGKEANFRS 242

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              I+  ++++   PE  Q +                   +V       +          
Sbjct: 243 VKTIVDCLNRM--RPELRQEVR---------------DPDSVGHVSVFHTNDWVGQRRAG 285

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQ----AKDILVLVRK 382
             W     +     +   +   +A    ++    T       R++        +  + R 
Sbjct: 286 GHWAGDLPADVGHQALEHVKELLAQQGWDLAPGSTKILMLTHRLLATEQGYTSLPTVFRY 345

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                           D                    D  A  RF +  E       +L+
Sbjct: 346 NDAFTKKEHPHIAYLVDELEP--------------ACDAFAANRFGVMFEALGGTTPLLR 391

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
           S     +  +      +   T TV + I    +    +    I+                
Sbjct: 392 SHADKAAWHNAMTRVLELRATGTVGDVIDHLLDQRKPRLPDAIEK--------------- 436

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
                      R++ +  F     + + E L    R     Y+ +  L + L+ + P   
Sbjct: 437 -----------RERELRDFDRTAGEEMPERLAEVERLRAVPYAEISALRAYLDGHSPFET 485

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
           +              H  KG E   V +V                               
Sbjct: 486 K--------------HGVKGAEFDNVLVV-----------------------IGRGWNQY 508

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
              +         I   ++ + E    L YV  +R   +L +
Sbjct: 509 NFGEMLGLAAGQAIPAAREESFERNRNLFYVACSRPKRRLAL 550


>gi|292670882|ref|ZP_06604308.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas noxia ATCC
            43541]
 gi|292647503|gb|EFF65475.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas noxia ATCC
            43541]
          Length = 1182

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 74/709 (10%), Positives = 178/709 (25%), Gaps = 145/709 (20%)

Query: 338  QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
            + ++  + A  +A  I  +   +           + ++I VLVR   D      L     
Sbjct: 323  EAANPRLEAEAVASDILRLAREE---------GYRYREIAVLVR---DMDTYADLLLPAF 370

Query: 398  NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF----------N 447
             D  I    + +   T H   + L A  +         +    L++  F           
Sbjct: 371  ADCGIPCHLDAKRPSTHHPLAELLRAAAQTAWRGWGYDTVFRALRTGFFPVVTEPTDDGG 430

Query: 448  FSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI--------HELIHIAQFCS 499
            FS  D  +   +       +    +        +  V + I           + IA+  +
Sbjct: 431  FSCGDWQEAVDRLENYCLAFGIHSENQWTATEDWDFVRRTIPEDARETEQNAMRIAEEIA 490

Query: 500  PHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE--QNSYSSLQELISELEQY 557
              D    I        Q + R G    +       F  + E  Q       E  +E    
Sbjct: 491  LDDIRRRIAAPLSLLTQNLRREGCLAQERAHALYKFLTKLEAPQKLEMWSAEADAEGRLA 550

Query: 558  PPTIKRAHSAN-----HNEVRIMTVHTAKGLESP------------VVFLVDTGSQVFSH 600
                 R   A+        V +         +               +          + 
Sbjct: 551  DAAAHRQIWASCMTLLEQLVEVSGDENLSARDFEELLQDGLDALEIALIPPGLDHVTIAA 610

Query: 601  KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE-------------- 646
                 +  + +          +P++  +  ++SD  +   + +                 
Sbjct: 611  FDQNSLAGIRAAYIIGANAGTMPRAGVQQGVLSDADRLSIRESLAHTNHTIFGGGHEQSF 670

Query: 647  -YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSIN 705
                 LY G T A + L +    ++++            +         +  + +    +
Sbjct: 671  LERYQLYRGFTEAREYLWVSYALSSADGAALAPSPLITRLRVICPTVLSIP-LAMVERTD 729

Query: 706  KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI------------------ 747
                 A            L ++E    L     +   + S                    
Sbjct: 730  DLVLSAPHPVLSLLAGALLGQKERGIMLPLWSDVYNWMRSNAVMHPLLRLMVRGLVSSPR 789

Query: 748  ----------KNDINEPYILNPS--TIDTKGKTNLESLLSDNQTF-----------NRGL 784
                      K        ++ S   ++T  +                        + G 
Sbjct: 790  EEEQLSLATAKQLFARDGRISGSTTRLETFRQCPFRHFAMYGLGLKERDVYEFQSNDFGT 849

Query: 785  IIHKLL----QVIFTLPEHKR----KNFITSYCTKNAKLWPA-------------KEYKN 823
            ++H++L    + + T   +       +          ++ P                 + 
Sbjct: 850  LLHEILHGYGEWVRTKHANDWCAAEPDSAAKIDELMHEVIPRIRSSVLISRASYRHRIER 909

Query: 824  LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII-------------SGRIDQ 870
            +  +  +++ +  +T+     S+  +           D+ +              G+ID+
Sbjct: 910  IRRTAQQVIRH--LTSWAKASSFHPLGFEISFGRDMDDVRLEEFQLAGGATLSLRGQIDR 967

Query: 871  ISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
              +++      + +YKT        E I +    QL +Y  +++    +
Sbjct: 968  FDVTKARDYYLVLDYKTGGTSLLLPE-IRHGLKMQLLLYLFVIRSLLHD 1015


>gi|168071319|ref|XP_001787136.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659614|gb|EDQ48050.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 296

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 25/174 (14%)

Query: 154 INTNDLLKKRDVSAWIRYKI-------DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +  ++ L+  D++  +  +         +  +H +IDE QD S ++  V+          
Sbjct: 81  LFADERLEAEDIAPLLYLQHIVEGMNKAEHFDHTVIDEAQDLSALEIAVVSL-------- 132

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               +  ++L  VGD  Q I+S+ G     +   + + Q         +    L  S+RS
Sbjct: 133 ---ATKNQSLTIVGDIAQGIHSYRG-----IHAWEELTQGIFQKLRPSY--YTLSQSYRS 182

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
           T +I+   ++V    E  + +          +   +      +LWE V  + + 
Sbjct: 183 TIEIMKCANEVLRQIELPETVLAKPVLRHGDKPIMVSPATREKLWEDVAKRVEE 236


>gi|15893892|ref|NP_347241.1| superfamily I DNA/RNA helicase [Clostridium acetobutylicum ATCC
           824]
 gi|15023473|gb|AAK78581.1|AE007575_5 Superfamily I DNA and RNA helicase [Clostridium acetobutylicum ATCC
           824]
 gi|325508019|gb|ADZ19655.1| Superfamily I DNA and RNA helicase [Clostridium acetobutylicum EA
           2018]
          Length = 721

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 109/326 (33%), Gaps = 32/326 (9%)

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
              +    ++ I ++  + +   +++  K+ ++            +  K         + 
Sbjct: 391 LFRRNKKIRRIIFSKLKDIRDEKIRQIQKEYEEAVKNSTSEELNLQGNKLMFQRKLKIRE 450

Query: 133 LNAHYEEAKKKNCVLDFEDLI-----INTNDLLKKRDVSAWIRYKID-------QEINHI 180
                 EAK+    LD  D++     +N + +    DV+  +  KI        +E+ H+
Sbjct: 451 TLRRLMEAKRSLTWLDNIDVLEIYKRLNGDKIYTIDDVAPLMYIKIRLDGVKLEREVKHV 510

Query: 181 LIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR- 239
           +IDE QD S +Q+ VI+ LT               +  VGD  Q +       PK   + 
Sbjct: 511 VIDEAQDYSKLQFIVIKKLTNCLG-----------MTIVGDSNQRL------IPKFDEKI 553

Query: 240 EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
                     +    F + +L  S+RST +I+   ++  +       +           S
Sbjct: 554 AMERMDTIFEDM--DFEMFKLDKSYRSTKEIMEYANRFLNDTSIIPMVRSGEKVQSLSIS 611

Query: 300 SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
           S    V  V      + +   +                +   +      I        G 
Sbjct: 612 SEDEFVDRVTYAIDDMKKEGIETIGVICENMHDTKYFGELLKSKKYINIIEKENQIYTGG 671

Query: 360 DTIFSNGKKRVIQAKDILVLVRKRKD 385
           +T+  +   + ++   ++++ R+ K+
Sbjct: 672 ETVMPSYFAKGLEFDGVILVSRENKE 697


>gi|300868159|ref|ZP_07112791.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300333783|emb|CBN57971.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 265

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 71/219 (32%), Gaps = 32/219 (14%)

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTF---------NRGLIIHKLLQVI----FTLPEHK 800
           PY L+ + +    +          +             G  +H  L  I      L    
Sbjct: 2   PYPLSATKLQDYHRCPKSYYFKYERGLKTKAFFVSPALGKALHAALAKIYWDWHYLDPLP 61

Query: 801 RKNFITS-YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK 859
           +  +I   + + ++ L    +       I        +   +S      ++V GKI    
Sbjct: 62  KMTWINQCWESVSSLLSSELQASGA--EILNTYYCQFIAPLIS--LRKPLAVEGKIQATL 117

Query: 860 K----DIIISGRIDQISISQQNIFIFEYKTHHHVPQ-EIEHIPYTHIAQLSIYEKILKDS 914
                D  I+GR D++   +  + + +YK+   +P  + + I      Q+ +Y   L+  
Sbjct: 118 NLCNVDFKITGRYDRLDWLEDGLELIDYKSTKTMPAFDPDEID----LQIGLYYLALEQK 173

Query: 915 YPNKSLVCLLIYVSEPKVFIIPQN-----KLNKAFAEIS 948
           Y        L+YV   +  +         ++     E++
Sbjct: 174 YHQSLKQMSLLYVQLGEEIVFEATPEHKQQVEATIGELA 212


>gi|1770451|emb|CAA66919.1| X-1 [Homo sapiens]
          Length = 226

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 61/205 (29%), Gaps = 48/205 (23%)

Query: 537 LRNEQNSYSSLQELISELEQYPPTIKRAH-SANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
            + + +   ++  +   L                  V +MT+H AKGLE PVVFLV    
Sbjct: 2   AKYQPDDPEAIDPMTDFLGTTALMSDLDDFEEGDGAVTLMTLHAAKGLEFPVVFLVGMEE 61

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGM 655
            +F                                        + +   EE  RL YVG+
Sbjct: 62  GIFPLSRAL----------------------------------MAEDQLEEERRLAYVGI 87

Query: 656 TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWS 715
           TRA  +L +                +  ++Y    ++E  + I   +    +        
Sbjct: 88  TRAMKKLFLT-------------NAFSRLLYGRTQSNEASRFINEISPALLETEYGQNTR 134

Query: 716 THHPENTPLEREETIKQLMDEQKIP 740
                + P +R+    Q    +  P
Sbjct: 135 VTPRRDLPFDRKNQRAQATTYRATP 159


>gi|165924170|ref|ZP_02220002.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
 gi|165916385|gb|EDR34989.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
          Length = 680

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/601 (11%), Positives = 158/601 (26%), Gaps = 87/601 (14%)

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
             I  M          +        +  L + R     +          + ISV      
Sbjct: 41  MEIQTMARWAYAQWEKEPNQKIGCVMPDLTQHRTQVLRLFTEIFGSSEHFNISVA----E 96

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDD--IFKICTQRHETETVYE 468
            LT     +  +        + D +    + +S   N    D  +      +      ++
Sbjct: 97  SLTQIPLTQIALKCLELDPFKIDIMQLGTVFRSSYINSRTVDVCLAAQLDVKLRESAHWQ 156

Query: 469 YIQKFANCGISKFQ------HVIKYIHELIHIAQFCSPH------DFFTLILGAKKGRQQ 516
               F    + + Q       +       +                F   +       Q+
Sbjct: 157 ANPAFILYHLHQLQPHFQSTTLTTRCQTWLSKRSSTRLFPSAWAQQFSEELTAIGWPGQR 216

Query: 517 FISRFGNE---VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
            +     +     + L           +Q +  +  +L+ +L  +     +  S+ ++ +
Sbjct: 217 SLDSKEYQQWKRWENLLHEYAALDTFTQQQTRKNALQLLRQLAHHTL--FQPMSSQNSSI 274

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           +I+ +    G     +++     + +         +          P+ + +     +  
Sbjct: 275 QILGLLETTGHYFDKLWIAGLNDKKWPPVASPNPFL----------PLSLQRRCQMPHAS 324

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           +   K   + T +  NRLL     +++  +I+       + + S           +  + 
Sbjct: 325 A---KREMEYTLQLQNRLL-----KSAPAIILSTPLQEGDIQLSTSPLIRHFPEINNEDL 376

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           +      L   + K + +        P     E       L+  Q I             
Sbjct: 377 QLPAWQPLKAHLFKIKMLETIEDAQAPALQENEPMSGGSGLLQSQSIC------------ 424

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----------QVIFTLPEHKRK 802
                            L    +      RG  +H+ L          Q + +  + + +
Sbjct: 425 ---PFQAFAKVRLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNSSSDGELE 481

Query: 803 NFITS---YCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN--- 856
           N I     +     KL            + +L++N      +         VS +     
Sbjct: 482 NIIDETITHLISQEKLIQPLFLNTEKKRLKQLIKN----WLLLEKKRPPFEVSQRETKRH 537

Query: 857 CPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI---EHIPYTHIAQLSIY-EKILK 912
                + +  RID+I     N FI +YKT      +    + +      QL +Y     +
Sbjct: 538 IKIGPLRLEVRIDRI---DNNCFIIDYKTGGQNSVDDWFGDRLKS---IQLPLYCAYAAR 591

Query: 913 D 913
           +
Sbjct: 592 E 592


>gi|225874787|ref|YP_002756246.1| helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196]
 gi|225792206|gb|ACO32296.1| helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196]
          Length = 566

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 25/218 (11%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
             + +    L  K   +         +        + ++    +        Y   +   
Sbjct: 52  SRAAIRQVLLRCKEILKPAERRAVAVQTYHSFCMDMLRAHGRLLLGHPVRFMYPGDERLQ 111

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            +     +     +   K+  +  F+       +LL++    A +R  I      I++DE
Sbjct: 112 KAAFEGDWEAER-QRQAKEMGIFCFDLFAQGAAELLER---CAALRKLIGDSFPMIIVDE 167

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH-GAEPKRVLREKRI 243
            QDT   QW ++  L                +F + D  Q I+ +    +P R+   +  
Sbjct: 168 FQDTDDNQWRIVAQLA-----------KVADIFCLADPDQRIFDYRDDIDPLRIEGLRTT 216

Query: 244 NQKRATNAGQKFSIIELPLSFRST-ADILTVVDKVFSI 280
              R  + G          + RS  A IL   + V   
Sbjct: 217 LAPREFDLGG--------ENHRSPNAGILNFANAVLHN 246


>gi|158340173|ref|YP_001521343.1| hypothetical protein AM1_B0310 [Acaryochloris marina MBIC11017]
 gi|158310414|gb|ABW32029.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 25/193 (12%)

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-----LPEHKRKNFITSYCTKNA 813
           P +   + +  L S          G  +H  L  I+       P      F   +   N 
Sbjct: 17  PQSYQFRYEHKLPSPTLFGS-TKLGNALHAALATIYKDWNYAYPLPSLDWFAVCWQQHNG 75

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS----GKINCPKKDIIISGRID 869
           +L P + ++       +L     ++     +    + +       +     +  +SGR D
Sbjct: 76  ELTPTQIHEGWA--ALQLYYERYISPL--PEIRKPLGIETKVRANLQVRNIEFTLSGRYD 131

Query: 870 QISISQQNIFIFEYKTHH--HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           ++      + + +YKT    + P  ++        QL  Y  IL+  Y        LIY+
Sbjct: 132 RLDYIDDGLELIDYKTSKSVNPPPSVD-------IQLGFYYLILEQIYKKALKRLSLIYL 184

Query: 928 SEPK--VFIIPQN 938
              +   + +  +
Sbjct: 185 RSNEKLTYEVNDD 197


>gi|227546869|ref|ZP_03976918.1| ATP-dependent nuclease subunit B family protein [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227212831|gb|EEI80712.1| ATP-dependent nuclease subunit B family protein [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 1101

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 70/594 (11%), Positives = 158/594 (26%), Gaps = 51/594 (8%)

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ-ESWTSYFDSL 336
           F+    ++     +     H +  +G        E +  + D   N       +S   S+
Sbjct: 211 FAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLSSIFASSASTSV 270

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                 +   R  A +I   I  +          I   D+LV     +D           
Sbjct: 271 CAMPDTTAEVRYAAASIKKFIADNP--------EISYGDVLV---TSRDLGSYQAQIASE 319

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF----NFSEDD 452
                I +       + DH     ++ L      +    S + +L+S +F    N +   
Sbjct: 320 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLNLTPTA 379

Query: 453 IFKICTQRHET--ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           I  I  Q +     TV+          + K + +I+   ++       +  +    ++G 
Sbjct: 380 IDDIENQLNSNNPATVWIDTDIPFAAHLQKIRSLIQQAADVFRPRPSATVREALGGMVGF 439

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE-LISELEQYPPTIKRAHSANH 569
                Q I         +++ F +   +   + ++         L               
Sbjct: 440 LTEYAQTIEGSAPVWTVIMNAFDDMVQQLGNDYFAEYVGIFARNLASTLAAQSIDSRPVS 499

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
                +   ++       V ++            +   +      D    +         
Sbjct: 500 ASAVDVLPMSSPLHPYRYVIVLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLE- 558

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
              + L   +++ + +E        +  A+ QL +    +  N  ++           + 
Sbjct: 559 -AWNVLSGTVERRSGQEPL-WFNGVVASATQQLSMTYPKSLRNAAQACSPYISQWETGTS 616

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
              E +   K      + E+   +              E   +L        +++     
Sbjct: 617 DTSEIIGASKRAVPTVETEYRPLDR-------------ELAYRLFTRPDYVHRVYRTHGA 663

Query: 750 DINEPYIL---NPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVIFT 795
           D +    +   + S I+T  +   E  L                   G   H +L+    
Sbjct: 664 DPSISTRVFNASVSAIETYYRNPYEYFLKYGLKVNVANAFAFDAALEGTFYHAVLEHAVN 723

Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
               + KN              A + + L+   +RL       T ++ D   EV
Sbjct: 724 AWIERHKN--ERDLNGLPPQPTATDMQELIADYSRLDRGCNQWTVLNEDPRMEV 775


>gi|302390478|ref|YP_003826299.1| UvrD/REP helicase [Thermosediminibacter oceani DSM 16646]
 gi|302201106|gb|ADL08676.1| UvrD/REP helicase [Thermosediminibacter oceani DSM 16646]
          Length = 683

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 37/208 (17%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDL-LKKRDVSAWIRYKIDQEINHILIDEVQ 186
            LA+ L   Y  A          D+    ++L LK   ++     +  +    +L+DE Q
Sbjct: 272 DLAEKLQEIYNAALI-------NDM--FVHELYLKYFQINIDRFLRRFKGYYGVLLDEAQ 322

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           DT+ + +++   +              +    VGD+ Q+IYS+ G               
Sbjct: 323 DTNPVTFDIFMHI------------PAKKKVIVGDKHQNIYSWRG--------------T 356

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
           R     + F I  L  +FR   +I    +++    +      +      R  + +   + 
Sbjct: 357 RNYLTHKDFEIFYLTETFRFGEEIAAKANRILRDYKGETNFIKPKKAVARKSNGKTAFIT 416

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFD 334
                  +    +   N + +      D
Sbjct: 417 RTN-SRIIKLVEEFPSNEEIKFLRQLDD 443


>gi|153940752|ref|YP_001392687.1| putative helicase [Clostridium botulinum F str. Langeland]
 gi|152936648|gb|ABS42146.1| putative helicase [Clostridium botulinum F str. Langeland]
 gi|295320669|gb|ADG01047.1| putative helicase [Clostridium botulinum F str. 230613]
          Length = 709

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 19/181 (10%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +   EI HI+IDE QD S +Q+ V++ LT+            +++  VGD  Q       
Sbjct: 489 RYRNEIKHIVIDEAQDYSFLQFVVLKELTDC-----------QSITIVGDVNQRTLPCKD 537

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             P   L         +           L  S+RST +I+   +K     +    + E  
Sbjct: 538 EVPMLCL--------DSVFNRVDVEYFNLDKSYRSTKEIIEYANKHLKTNKIVPLVREGD 589

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   +    +  V  +   +     +      +       +  E    +    I  
Sbjct: 590 PVKEVTVKNSREAIDKVNYYLSYLENKGYENIAIITTTLEQGKVIGSELKKQMYINLIER 649

Query: 352 T 352
            
Sbjct: 650 E 650


>gi|153934076|ref|YP_001385660.1| putative helicase [Clostridium botulinum A str. ATCC 19397]
 gi|153937538|ref|YP_001389066.1| putative helicase [Clostridium botulinum A str. Hall]
 gi|152930120|gb|ABS35620.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933452|gb|ABS38951.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 709

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 19/181 (10%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +   EI HI+IDE QD S +Q+ V++ LT+            +++  VGD  Q       
Sbjct: 489 RYRNEIKHIVIDEAQDYSFLQFVVLKELTDC-----------QSITIVGDVNQRTLPCKD 537

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             P   L         +           L  S+RST +I+   +K     +    + E  
Sbjct: 538 EVPMLCL--------DSVFNRVDVEYFNLDKSYRSTKEIIEYANKHLKTNKIVPLVREGD 589

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   +    +  V  +   +     +      +       +  E    +    I  
Sbjct: 590 PVKEVTVKNSREAIDKVNYYLSYLENKGYENIAIITTTLEQGKVIGSELKKQMYINLIER 649

Query: 352 T 352
            
Sbjct: 650 E 650


>gi|212696889|ref|ZP_03305017.1| hypothetical protein ANHYDRO_01452 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676179|gb|EEB35786.1| hypothetical protein ANHYDRO_01452 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 104

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/96 (11%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
              + ++           +           +  ++G+ID +   + +I + ++KT  +  
Sbjct: 3   FFNSNLIKDIREKSPL--IRKEESFLRKIDNFYVNGQIDIMFEFEDHIILMDFKTDSYKR 60

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
           +        +  QL IY+  ++++   K     + +
Sbjct: 61  EGF------YDKQLEIYKDSIEEALGKKVSKSYIYW 90


>gi|261405431|ref|YP_003241672.1| UvrD/Rep helicase family protein [Paenibacillus sp. Y412MC10]
 gi|261281894|gb|ACX63865.1| UvrD/Rep helicase family protein [Paenibacillus sp. Y412MC10]
          Length = 725

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q  +HI+IDE QD S  Q  V+                  +   +GD  Q I+++ G   
Sbjct: 479 QRFDHIVIDEAQDFSPFQVAVLDLFV-----------RGHSFTILGDLSQGIHAYRG--V 525

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
                   + ++  T          L  S+RST +I+   + +   
Sbjct: 526 HAWEEMSSLFKEEETAY------FALTRSYRSTMEIIEFANGILEK 565


>gi|90021649|ref|YP_527476.1| DNA helicase/exodeoxyribonuclease V subunit B [Saccharophagus
           degradans 2-40]
 gi|89951249|gb|ABD81264.1| DNA helicase/exodeoxyribonuclease V, subunit B [Saccharophagus
           degradans 2-40]
          Length = 935

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 75/695 (10%), Positives = 172/695 (24%), Gaps = 120/695 (17%)

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365
           G  +L     +   S  N  Q+      D         +       TI+         + 
Sbjct: 184 GFTELNPLQQALVTSATNNVQQLPIEKCDQASAGLIECVDWETEIETIARWAHQTLRQNP 243

Query: 366 GKKRVIQAKDILVLVRKRKDTPLI-------TFLTRFLKNDYKISVVGNDRFILTDHLAI 418
             +  I    I  L + R              +L     +        +    L +   I
Sbjct: 244 STQIGIV---IPNLQKHRSQIECAFIRQFDNDYLLNPTSSGADKPYELSIGSPLAEEPCI 300

Query: 419 KDLMALGRFILSQEDDLSFVCMLKSPLFN-----------------------------FS 449
            D + L + +  +      + +++S  +                               S
Sbjct: 301 ADALLLTQLLHKKLTKEEALDLIRSEFWGQNTEARLLALQGLNDWPMTSVDTIRLTELLS 360

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCG--ISKFQHVIKYIHELIHIAQFCSPHDFFTLI 507
           + +           E   +   +  +     ++    I+      H   F   + F    
Sbjct: 361 KAEKRIETANDLNKEQFKDGFIEATDEMTTSNRILEAIQLYRLAAHKLDFQHWNGFLKRF 420

Query: 508 LGAKKGRQ-QFISRFGNEVID----VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
           L        + ++    + ++    +LDE L        ++  +    ++ L Q      
Sbjct: 421 LKTLNWPGNRTLNSREYQAVEQFKLILDELLVDQRCFIGSNLVTFPAYVAHLRQRLSEKV 480

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                    ++I     A GL     ++ +T    F         +  +L      P   
Sbjct: 481 FQQQTPRKPIQISGTLEAIGLSFDKCWVANTTRSQFPESPQPNAFLPLALQKAFATPRSS 540

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
           P                K+    E         +  ++++         +E +       
Sbjct: 541 P---------------QKELDYAEQL---LTIFSECANEVTFSYSKTAEDEHQQVSPLLP 582

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
            M       ++  K +          +  +   +          E +IK       +   
Sbjct: 583 PMASKKLDEEQLAKNLYFDKYNTASAYRNFSVFSDLCGLPLKHSEASIKIRRGVNALSTY 642

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLP----- 797
             +P+   +          +  K    +   +S      RG I+H +L+  +        
Sbjct: 643 AVNPLYAYLVH-------RLGAKQPNPVYVGISPP---QRGNILHNVLETFWEATKNSAA 692

Query: 798 ---------------EHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMS 842
                          E    + + +   K+ +  P +  +        +L    +     
Sbjct: 693 LKTKLENQAAFLAELEALISDNVNAELHKHLQYLPPQLLELEKERCLSVL----VQWLTL 748

Query: 843 CDSYSE---VSVSGKINCPKKDIIISGRIDQI--------SISQQNIFIFEYKTHHHVPQ 891
               +     +         K I  + R+D++          +  +I + +YKT      
Sbjct: 749 ESYRAPFIVAATENAYAIELKPISFNVRVDRVDSPTSASGEPTGNSI-LIDYKTGSTPLS 807

Query: 892 EIEHIPYTHIAQLSIY---------EKILKDSYPN 917
            ++  P     QL +Y            L    PN
Sbjct: 808 LLQRAPLV-EPQLPVYTQLKELSASAVALGQLQPN 841


>gi|313157476|gb|EFR56895.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 960

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 62/622 (9%), Positives = 137/622 (22%), Gaps = 81/622 (13%)

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
           V L+             ++E  +         +     A  I   ++     +       
Sbjct: 262 VALFPPRTEFAHDNMRGEKEVVSVA---AVSNAVQCKYAAAILADLARRRAQEDPEVAAG 318

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
            +    K+  V++        + +            V     F L   LA   +  L   
Sbjct: 319 LKPALGKETAVVLTDENLLLPLLYALPADIGR----VNVTMGFPLRQSLAYTFVERLVEL 374

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY 487
              +           + +           C          E ++       + +    + 
Sbjct: 375 QNHRRKKGGGWTFYHADVAGILAHPYVAECDAALTRTMHEEIVRDRWISVDAAWLGRNEL 434

Query: 488 IHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL 547
           +  +   A      +    +LG      +      +    V  EFL           +SL
Sbjct: 435 LKRIFSPAAEWR--ELSDYLLGVIAAVARQPYEGDDARQRV--EFLAVIAEQVTKLRNSL 490

Query: 548 QELISELE----------QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
            E   EL                           ++IM +   + ++   V L+      
Sbjct: 491 DECDIELATEVYTSLLRRHLQTLRIPFEGEPLEGIQIMGILETRNVDFENVILLSMNDDN 550

Query: 598 FSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTR 657
           F   H+ +   +P               +                         Y  + R
Sbjct: 551 FPGNHVAQSSFIPYNLRAAYELPTPEHHEGVYAYY------------------FYRLIQR 592

Query: 658 ASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           A    ++              R  Y +      + E    ++                  
Sbjct: 593 AKSVHMLYCSHADDKSTGEPSRYIYQL------DYESGFDVRKIEVGVDVNLAETAPIEV 646

Query: 718 HPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDN 777
             +   + R E          +    F          Y  + + ++   + +      + 
Sbjct: 647 AKDGEVMRRLERFVDAESPAALSPTAFFRYVACPLRFYFHSVARLEADDEIS-----EEV 701

Query: 778 QTFNRGLIIHKLLQVI------FTLPEHKRKNFIT--SYCTKNAKLWPAKEYKNLLLSIT 829
                G I+H  +Q +         P    +  I          +       ++   S  
Sbjct: 702 DAPMFGTILHAAVQTLYARIVGEEHPGQTLRAMIRSGEVAAAVERAINENYLQDERASAE 761

Query: 830 R-----LLENPMMTTAMSCDSYS-------------EVSVSGKINCPKKDIIIS----GR 867
                 LL   ++T  +                   E  V+        +  +     G 
Sbjct: 762 DYTGNLLLVKDIVTRYLRGGVMPYDAAHDAFAVSGLEERVAYSFPFRAGERELEMKFGGI 821

Query: 868 IDQISISQQNIF-IFEYKTHHH 888
            D+I +       + +YKT   
Sbjct: 822 ADRIDMLGDGALRVVDYKTGAP 843


>gi|72162725|ref|YP_290382.1| DNA helicase [Thermobifida fusca YX]
 gi|71916457|gb|AAZ56359.1| putative DNA helicase [Thermobifida fusca YX]
          Length = 711

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 27/247 (10%)

Query: 152 LIINTNDL--LKKRDVSAWIR-YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           L+  T  L  L+    +  I   + ++   ++++DE QD    QW  +R+          
Sbjct: 425 LMRRTKQLSALELHAEATRILNARTEKPYTNVVVDEGQDLHPAQWRTLRA---------A 475

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
               P  +F  GD +Q IY          +  +++                L +++R+T 
Sbjct: 476 VAPGPNDMFIAGDNRQRIY-------DNTVSFRQL------GINVVGRSYPLRMNYRTTT 522

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
           +ILT  +++    +   GL  D+        S +     V       +        Q  S
Sbjct: 523 EILTWAEQIMQGEDA--GLGMDAAEPAGVTRSLLQGAPPVLYGAPDAAAELVALARQVRS 580

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
           W +   +       +   R +   +S +       +    +     D    VR      +
Sbjct: 581 WLAKGIAPGDICVTARTRRGVTEVVSALRRHGIPAARFNPQQHTVDDSADAVRVTTMHGV 640

Query: 389 ITFLTRF 395
                R 
Sbjct: 641 KGLEFRA 647



 Score = 39.5 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 26/112 (23%)

Query: 561 IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
            +     + + VR+ T+H  KGLE   V +    +             +           
Sbjct: 621 QQHTVDDSADAVRVTTMHGVKGLEFRAVAVTGVTATALPLMDHVTSPDLD---------- 670

Query: 621 WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                           ++  +S       LLYV  TRA + L +  H + S 
Sbjct: 671 ----------------ENQHRSDLAAQRSLLYVACTRAREALYVSWHGDPSP 706


>gi|56750599|ref|YP_171300.1| hypothetical protein syc0590_d [Synechococcus elongatus PCC 6301]
 gi|56685558|dbj|BAD78780.1| unknown protein [Synechococcus elongatus PCC 6301]
          Length = 263

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 48/142 (33%), Gaps = 8/142 (5%)

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
              G  +H+ L                ++     +               ++LE      
Sbjct: 37  TALGTSLHRCLAQFHRDWSGLEPQPPIAWLADCWQQAATALNAEQQHQGWQILETYYQQH 96

Query: 840 AMSCDSY-SEVSVSGKINC----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
            ++  ++   ++V G+I       + + +++GR D++ + +  + + +YK+         
Sbjct: 97  ILTKATWTRPLAVEGRIQATLVLEEIEFLVTGRYDRLDLEEDGLHLVDYKSSQRFDPPSS 156

Query: 895 HIPYTHIAQLSIYEKILKDSYP 916
                   QL +Y+  L+  + 
Sbjct: 157 SQID---VQLGLYQLALEPRFG 175


>gi|227515340|ref|ZP_03945389.1| DNA helicase [Lactobacillus fermentum ATCC 14931]
 gi|227086254|gb|EEI21566.1| DNA helicase [Lactobacillus fermentum ATCC 14931]
          Length = 764

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 69/243 (28%), Gaps = 27/243 (11%)

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +   DLL           +  +EI  + +DEVQD    Q   ++                
Sbjct: 514 LYLYDLLTG--------KRGQREIRFVFVDEVQDYDAFQLAYLKFCF-----------PK 554

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
                +GD  Q+I++ + A    + +   + +       +K  +I+L  S+RST  I   
Sbjct: 555 ARFTLLGDLNQAIFTHNNAR-SLLQQLGTMFE------PEKTKVIQLTRSYRSTKQITNF 607

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
              +    E  +    +        +          +      Q D           +  
Sbjct: 608 TKAILKDGEAIEAFEREGELPRVLTAPSEEDAVNQVVATLAKYQADHDTTAIITKTLTDA 667

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           + +      +  A  +  T +  +   TI            D  V+V             
Sbjct: 668 EKITALLKEAGQAVTLIQTENQRLAQGTIVVPSYLAKGLEFD-AVIVWDANQAKYQGDAE 726

Query: 394 RFL 396
           R L
Sbjct: 727 RQL 729


>gi|257451429|ref|ZP_05616728.1| hypothetical protein F3_00085 [Fusobacterium sp. 3_1_5R]
 gi|317058009|ref|ZP_07922494.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313683685|gb|EFS20520.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 876

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/453 (12%), Positives = 123/453 (27%), Gaps = 42/453 (9%)

Query: 482 QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLR-NE 540
           +  I+ +   +              I    + +         E  DVLD F     R   
Sbjct: 366 ESFIEKMTLFLQDLFQIETWKEGKDIYEYFEKQIDIQKWKEEEYPDVLDVFYEILSRLYA 425

Query: 541 QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
               + L    +  E                +  + + +A+      + L D  S ++  
Sbjct: 426 SQGKTHLLSYENYFEGNLGRNLYQLLYRS--LDSIYIKSAQSFSEEKIELRDWHSLMYER 483

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
           K  K+   +  L+D     +    S         L    ++ +        Y  +     
Sbjct: 484 KKEKQAIFL-DLDDKSLPKLTKTISFLTEVQKQQLDCQTREESILVEKYRFYQAVYSQKR 542

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            + + + S   N+  S+    +              K     S+ +       W+    E
Sbjct: 543 VVFLVQKSEEKNKTLSSFVEEFLWKQGKKIEKSPYSKAFFLQSLRESFSSEVSWTKEFEE 602

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
              L  ++  ++L+ + K+    +          Y      +   G+  +E L       
Sbjct: 603 GKALALKKENEELLKDGKLSLGAYDWRDLKTCSKYFYFHKILGNSGR--IEELSFGLSPR 660

Query: 781 NRGLIIHKLLQVIFT---------LPEHKRKNFITSYCTKNAKLWPAK------------ 819
             G++ H+ L+ I                    +  Y  +  K    K            
Sbjct: 661 LLGIVCHRFLERIGREQWKIFLQERQFAISDTTLAQYLEEEFKKDSLKIPPFLKQYLRKI 720

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSE----VSVSGKINCPKKDIIISGRIDQISISQ 875
            Y  ++ +     +N      +   S  +    +   G     + ++   GR D +  ++
Sbjct: 721 VYPRIIKNTRNFFQNLEKKYRLENISRFQGEKGIEKEGIYRGKELNVSFQGRADLVIEAE 780

Query: 876 QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           Q   I +YKT   +             QL  Y 
Sbjct: 781 QGKEIIDYKTGKTIED-----------QLDFYA 802


>gi|168178996|ref|ZP_02613660.1| putative helicase [Clostridium botulinum NCTC 2916]
 gi|226950775|ref|YP_002805866.1| hypothetical protein CLM_3786 [Clostridium botulinum A2 str. Kyoto]
 gi|182669891|gb|EDT81867.1| putative helicase [Clostridium botulinum NCTC 2916]
 gi|226841475|gb|ACO84141.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 709

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 19/181 (10%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +   EI HI+IDE QD S +Q+ V++ LT+            +++  VGD  Q       
Sbjct: 489 RYRNEIKHIVIDEAQDYSFLQFVVLKELTDC-----------QSITIVGDVNQRTLPCKD 537

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             P   L         +           L  S+RST +I+   +K     +    + E  
Sbjct: 538 EVPMLCL--------DSVFNRVDVEYFNLDKSYRSTKEIIEYANKHLKTNKIVPLVREGD 589

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   +    +  V  +   +     +      +       +  E    +    I  
Sbjct: 590 PVKEVTVKNSREAIDKVNYYLSYLENKGYENIAIITTTLEQGKVIGSELKKQMYINLIER 649

Query: 352 T 352
            
Sbjct: 650 E 650


>gi|81299761|ref|YP_399969.1| hypothetical protein Synpcc7942_0952 [Synechococcus elongatus PCC
           7942]
 gi|81168642|gb|ABB56982.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 263

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 48/142 (33%), Gaps = 8/142 (5%)

Query: 780 FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTT 839
              G  +H+ L                ++     +               ++LE      
Sbjct: 37  TALGTSLHRCLAQFHRDWSGLEPQPPIAWLADCWQQAATALNAEQQHQGWQILETYYQQH 96

Query: 840 AMSCDSY-SEVSVSGKINC----PKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIE 894
            ++  ++   ++V G+I       + + +++GR D++ + +  + + +YK+         
Sbjct: 97  ILTKATWTRPLAVEGRIQATLVLEEIEFLVTGRYDRLDLEEDGLHLVDYKSSQRFDPPSS 156

Query: 895 HIPYTHIAQLSIYEKILKDSYP 916
                   QL +Y+  L+  + 
Sbjct: 157 SQID---VQLGLYQLALEPRFG 175


>gi|330817364|ref|YP_004361069.1| predicted DNA helicase [Burkholderia gladioli BSR3]
 gi|327369757|gb|AEA61113.1| predicted DNA helicase [Burkholderia gladioli BSR3]
          Length = 577

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 58/190 (30%), Gaps = 22/190 (11%)

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           E   ++   + F+      ++LL +    A +R         I++DE QDT+  QW+ +R
Sbjct: 133 ERLFRETGRVAFDLFAPKAHELLSRS---ARLRELFSSCYPLIVVDEAQDTAEDQWQCVR 189

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L+               +  + D  Q IY F        +            A Q   +
Sbjct: 190 LLSA-----------GTQMMCLADLDQQIYDFRPGVSSDRV-------THIMAALQPLRV 231

Query: 258 IELPLSFRST-ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
                + RS  ++I+   + +             S    R       +     +   +  
Sbjct: 232 DLAGENHRSPNSEIVAFANDMLLNTPRGAAYRGVSRMNYRANREYRDRAIRQAIGIAIQR 291

Query: 317 QHDSQCNPQQ 326
             ++     +
Sbjct: 292 AKEAAQGDIE 301


>gi|253732676|ref|ZP_04866841.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus TCH130]
 gi|253729287|gb|EES98016.1| ATP-dependent nuclease Rex subunit B [Staphylococcus aureus subsp.
            aureus TCH130]
          Length = 1158

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 93/752 (12%), Positives = 196/752 (26%), Gaps = 174/752 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I               F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S++  +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDETMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE----------- 693
             +   + YV MTRA   +        S+        + + +   F+  E           
Sbjct: 634  MDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVN 693

Query: 694  ----------------RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                               +  L + I  D W+         ++     +  +  L  + 
Sbjct: 694  PLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 738  KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLII 786
            +  K   +  K+   +    + S  +   +              E    + Q F+ G I 
Sbjct: 754  ETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I                 K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYISERVNGD----FKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKIL----KDSYPNKSL 920
            I          + I +YK+       ++     +  Q+ +  Y  I+    +       +
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS-EGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIV 988

Query: 921  V-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
                L+Y  V EP++       I ++KL +  
Sbjct: 989  KPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 1020


>gi|94311070|ref|YP_584280.1| DNA helicase/exodeoxyribonuclease V subunit B [Cupriavidus
           metallidurans CH34]
 gi|93354922|gb|ABF09011.1| ATP-dependent nuclease, subunit B [Cupriavidus metallidurans CH34]
          Length = 976

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/571 (11%), Positives = 148/571 (25%), Gaps = 102/571 (17%)

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------------- 446
               V     + L+   A   LM     +    D  + + +LKSP               
Sbjct: 356 AGAPVRDETGWKLSTTRAAAALMRWFDVLARDGDSAALLDLLKSPFCLPAFEHRGAAIAL 415

Query: 447 ----------NFSEDDIFKICTQRHE-TETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
                           +  +  +R      + +     A+    + +   + +   +   
Sbjct: 416 MERRIRRAVVTGGWARLAHLFAERERAAGALVDAETMEASDAELQIRAAARTLIATLADE 475

Query: 496 QFCSPHDFFTLILGAKKGRQQ-----FISRFGNEVIDVLDEFLNFTL------RNEQNSY 544
               P       L    GR          R      D   + L+          +E  S+
Sbjct: 476 AAQWPRGLAQQPLHVWLGRLDAMLDTLDMRVALAADDAGRQLLDALAKLGDLPDDETGSH 535

Query: 545 SSL--QELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH 600
           ++L  QE  + L         K   + + + + I+ ++ A+      V +V         
Sbjct: 536 ATLNQQEFRAMLSALLESVAYKEPSAQSQSRITILPLNGARMRRFDGVVVVGCDDAQLPS 595

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
              + M     +  + G+               +     +     E            + 
Sbjct: 596 SAAELMFFSNQMRRELGLED------------REARFAQQARDLAEVLL--------NNS 635

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
            +++      S  +  +   W + +                             +T    
Sbjct: 636 DVVLTWQRIGSRGEPHHVSGWIERLSACCARAGT---------------PIEASATPALH 680

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
           +T  +       +  E+   +            PY    S +   G + L++L  D +  
Sbjct: 681 DTFAQPAGMPAPVAPERVPERWSAQAYNTLRRCPYQFFASRM--LGLSGLDTLSDDLEKR 738

Query: 781 NRGLIIHKLL----QVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKN-----LLLSITRL 831
           + G ++H++L    + I    E      +      +   +  +  ++            +
Sbjct: 739 DIGNLLHRVLLQYHEEIHASGERDSDRRLARLREISDTSFGKQIAEDGNAISYYRRWMEV 798

Query: 832 LENPMMTTAMSCDSYS-------EVSVSGKINCPKK-DIIISGRIDQISISQQNIF-IFE 882
           L  P      +    +       E      +  P    + ++GRID++         + +
Sbjct: 799 L--PSYVAWQAEREEAGWHWRGGEFDAGVDVAMPDGVPLRLAGRIDRLDKGPDGAHAVLD 856

Query: 883 YKTHHHVPQEIEHIPYTHIA---QLSIYEKI 910
           YKT    P               QL+ Y  +
Sbjct: 857 YKT---QPASRLRRKAGDAEEDCQLAFYGLL 884


>gi|304436812|ref|ZP_07396778.1| possible ATP-dependent deoxyribonuclease subunit B [Selenomonas sp.
            oral taxon 149 str. 67H29BP]
 gi|304370184|gb|EFM23843.1| possible ATP-dependent deoxyribonuclease subunit B [Selenomonas sp.
            oral taxon 149 str. 67H29BP]
          Length = 1198

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/538 (8%), Positives = 130/538 (24%), Gaps = 88/538 (16%)

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
              +   R         +        S  +   K +++ +           ++     +  
Sbjct: 490  QWLDHLRRRIAEPLSLLTGHLRRHESTARARTKALYDFLDELCVPQTLRLWSETADREGR 549

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEV 572
                 +    ++        +  +    +   S ++    L      +  A      + V
Sbjct: 550  LADAAAH--RQIWSSCMALFDQLVEVRGDDPLSSRDYEELLSDGLDAMSIALIPPGLDHV 607

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
             + +        +  VF++   + +             +     G  +    + S + + 
Sbjct: 608  TVASFDQNSIAGARAVFVIGANAGIMPRAGTTSGVFSDTELLFIGESLQTAGADSGHTVF 667

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +          LY G T A D L +    ++ +            +     + 
Sbjct: 668  GG-----RTQQSFLERYQLYRGFTEARDYLWVSYALSSVDGSTLAPSPLIARLRRISSSF 722

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI----- 747
              +  + L    +     A   +  H      E++E  +       +   +         
Sbjct: 723  FSIP-LALAGRDDPLLLSAPYPALSHLTAALREKKERGEMPAMWGDVYNWMLQDAVMQPL 781

Query: 748  ----------------------KNDINEPYILNPS--TIDTKGKTNLESLLSDNQTFN-- 781
                                           L+ S   ++T  +                
Sbjct: 782  LRRMLHGLFLPPREVSIPAPVAARLFTRDRRLSGSTTRLETFRQCPFRHFAMYGLRLQQR 841

Query: 782  ---------RGLIIHKLL----QVIFTLPEHKRKNFITSYCTKNAKLWPA---------- 818
                      G ++H +L    + + +   +     +     K  +L             
Sbjct: 842  DRYEFQSNDFGTLLHGILRGYGEWVRSAYGNDWCAALAEAPEKIEELLQELIPQVHSTVL 901

Query: 819  -------KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII------- 864
                      + +  +  + +++  +T+  +  S+               + +       
Sbjct: 902  MSRASYRHRIERIRCTAQQTIQH--LTSWAAASSFHPYGFEISFGRRNDGVRLADFPLAD 959

Query: 865  ------SGRIDQISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                   G+ID++ +   +    + +YKT        E I +    QL +Y  +++  
Sbjct: 960  GMTLSLRGQIDRLDVMDHHAYYLVLDYKTGATSLLLPE-IRHGLKMQLLLYLFVVRSI 1016


>gi|260662354|ref|ZP_05863249.1| DNA helicase [Lactobacillus fermentum 28-3-CHN]
 gi|260553045|gb|EEX25988.1| DNA helicase [Lactobacillus fermentum 28-3-CHN]
          Length = 764

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 69/243 (28%), Gaps = 27/243 (11%)

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +   DLL           +  +EI  + +DEVQD    Q   ++                
Sbjct: 514 LYLYDLLTG--------KRGQREIRFVFVDEVQDYDAFQLAYLKFCF-----------PK 554

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
                +GD  Q+I++ + A    + +   + +       +K  +I+L  S+RST  I   
Sbjct: 555 ARFTLLGDLNQAIFTHNNAR-SLLQQLGTMFE------PEKTKVIQLTRSYRSTKQITNF 607

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
              +    E  +    +        +          +      Q D           +  
Sbjct: 608 TKAILKDGEAIEAFEREGELPRVLTAPSEEDAVNQVVATLAKYQADHDTTAIITKTLTDA 667

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           + +      +  A  +  T +  +   TI            D  V+V             
Sbjct: 668 EKITALLKEAGQAVTLIQTENQRLAQGTIVVPSYLAKGLEFD-AVIVWDANQAKYQGDAE 726

Query: 394 RFL 396
           R L
Sbjct: 727 RQL 729


>gi|39938899|ref|NP_950665.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
 gi|39722008|dbj|BAD04498.1| ATP-dependent DNA helicase [Onion yellows phytoplasma OY-M]
          Length = 810

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 19/99 (19%)

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD +   + +I+ L           + P +L+  GD  Q+IYSF G+  + +    +  
Sbjct: 4   FQDLNYFYYFIIKELL---------FNKPNSLYCFGDYTQNIYSFFGSSERILELFVKDF 54

Query: 245 QKRATNAGQKFSIIELPLSFRSTA-DILTVVDKVFSIPE 282
                    K     L +++RS   +I+   +++    E
Sbjct: 55  ---------KPEKHFLNVNYRSKGINIVKAANELIDNKE 84


>gi|315164764|gb|EFU08781.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
          Length = 263

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 78/207 (37%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
            +          +  SD +    G  +H   +    + E  ++   +   +        K
Sbjct: 38  ESAALAKLKGEWTPESDPKALLVGNYVHSYFES-PEIHEAFKEENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +              EV V+G+I       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIY--QGKKEVIVTGEIV----GAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDIHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|258514695|ref|YP_003190917.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778400|gb|ACV62294.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771]
          Length = 706

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/337 (11%), Positives = 98/337 (29%), Gaps = 57/337 (16%)

Query: 6   GLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEER 65
           G    ++   I++  +          ++ +  +        +K    L++      +   
Sbjct: 265 GAGTGKTVAAIHRARYLAENVYTGSKDRILFTTFTRNLAADIK--DQLRRICSPGTMARI 322

Query: 66  ----FSLLSSFFLTQKF--------------TPQKNIITQEINKKSPD---LKEKLKKSQ 104
                    + FL Q                  +K +    +     D   L+E     Q
Sbjct: 323 EVVNLDRWVAGFLKQNGIAATLLVNGEEARSYWRKALTMAPVELGFSDEFYLEEWESVIQ 382

Query: 105 DEFIKIRDR-FNTYKMFKSTLASLTLAKY---LNAHYEEAKKKNCVLDFEDLIINTNDLL 160
            + +  R+      ++ + T     +      +   Y    +     +  D + +   L+
Sbjct: 383 PQEVSSREEYLKASRLGRGTRVDRKVRAAIWPVFEEYRLLLQSAGKREPADAMRDARILI 442

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           ++                 +++DE QD S+    ++R++  +             LF VG
Sbjct: 443 ERGYQIPE--------YKAVIVDEAQDMSVQAMRLLRAVAGE--------ERENDLFIVG 486

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  Q IY             +            +    +L +++R+T +I      + + 
Sbjct: 487 DAHQRIY-------------RHKVVLSKCGINVRGRSRKLRINYRTTDEIRKWSVAILND 533

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
                 L  +      ++S   G    ++++     +
Sbjct: 534 LPI-DDLDGELDDQKGYKSLLHGHPPVIRVFASEDEE 569


>gi|322691506|ref|YP_004221076.1| ATP-dependent nuclease subunit B [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456362|dbj|BAJ66984.1| putative ATP-dependent nuclease subunit B [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 1098

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 70/594 (11%), Positives = 158/594 (26%), Gaps = 51/594 (8%)

Query: 278 FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ-ESWTSYFDSL 336
           F+    ++     +     H +  +G        E +  + D   N       +S   S+
Sbjct: 208 FAHLNASEMRIVHTLAQYVHLTVMVGAGSDPDYLEALQRRDDGNRNTLSSIFASSASTSV 267

Query: 337 PQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
                 +   R  A +I   I  +          I   D+LV     +D           
Sbjct: 268 CAMPDTTAEVRYAAASIKKFIADNP--------EISYGDVLV---TSRDLGSYQAQIASE 316

Query: 397 KNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF----NFSEDD 452
                I +       + DH     ++ L      +    S + +L+S +F    N +   
Sbjct: 317 FTYQGIPINIAASSTMLDHPFADAILGLLDSATYELQPQSILRILRSGIFSRYLNLTPTA 376

Query: 453 IFKICTQRHET--ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
           I  I  Q +     TV+          + K + +I+   ++       +  +    ++G 
Sbjct: 377 IDDIENQLNSNNPATVWIDTDIPFAAHLQKIRSLIQQAADVFRPRPSATVREALGGMVGF 436

Query: 511 KKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE-LISELEQYPPTIKRAHSANH 569
                Q I         +++ F +   +   + ++         L               
Sbjct: 437 LTEYAQTIEGSAPVWTVIMNAFDDMVQQLGNDYFAEYVGIFARNLASTLAAQSIDSRPVS 496

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
                +   ++       V ++            +   +      D    +         
Sbjct: 497 ASAVDVLPMSSPLHPYRYVIVLGCSESQLPAIPHETGLLDDGERLDLSQFLTSQGKTLE- 555

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
              + L   +++ + +E        +  A+ QL +    +  N  ++           + 
Sbjct: 556 -AWNVLSGTVERRSGQEPL-WFNGVVASATQQLSMTYPKSLRNAAQACSPYISQWETGTS 613

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
              E +   K      + E+   +              E   +L        +++     
Sbjct: 614 DTSEIIGASKRAVPTVETEYRPLDR-------------ELAYRLFTRPDYVHRVYRTHGA 660

Query: 750 DINEPYIL---NPSTIDTKGKTNLESLLS-----------DNQTFNRGLIIHKLLQVIFT 795
           D +    +   + S I+T  +   E  L                   G   H +L+    
Sbjct: 661 DPSISTRVFNASVSAIETYYRNPYEYFLKYGLKVNVANAFAFDAALEGTFYHAVLEHAVN 720

Query: 796 LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEV 849
               + KN              A + + L+   +RL       T ++ D   EV
Sbjct: 721 AWIERHKN--ERDLNGLPPQPTATDMQELIADYSRLDRGCNQWTVLNEDPRMEV 772


>gi|306822219|ref|ZP_07455601.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309802208|ref|ZP_07696316.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
 gi|304554601|gb|EFM42506.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308221091|gb|EFO77395.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
          Length = 1355

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/425 (11%), Positives = 113/425 (26%), Gaps = 62/425 (14%)

Query: 20  LWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFT 79
           L       +       S    T           L+            +  S+        
Sbjct: 96  LLNGAEQDMIIRRVLASHVDHTNRGDECAVCDLLRTYFAVADWSGMVADDSTDAF--ANQ 153

Query: 80  PQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE 139
            +  +         P+L++ L           +        +       LA  L A Y+E
Sbjct: 154 LRDMLARMNEIGAKPELEDGLIARAASKDGTLNER-----HERMRTQWRLAFALRAEYDE 208

Query: 140 AKKKNC----VLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
           A +        LD   L+++    + + ++              +++D+ QD +L  +++
Sbjct: 209 AIRAAYPGEYRLDASQLMVDAAATVTQAEIEDLP--------KLLIVDDFQDATLAGFDM 260

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK-RVLREKRINQKRATNAGQK 254
           + +L          H     L  VG+  +S+ +F G+ P+      +   + R       
Sbjct: 261 LAAL----------HGRGVRLLLVGNPDESVQTFRGSYPEYLFNAAQSRLEARLERIDVT 310

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
            +    P  +R                  A  +S    +T     +   + G +      
Sbjct: 311 ETEQRKPT-YR---------------TLAASRVSLSIASTEPTDEALPSRPGKMPALPGS 354

Query: 315 VSQHDSQCNPQQESWTSYFDSLPQESSASILARR--IAYTISNMIGTDTIFSNGKKRVIQ 372
           +           +  +    S+      S +     + + I              +    
Sbjct: 355 LPIEAVPTGVSVDGISPDDGSIGTAMYRSAVEELDDVVWRIKT---------EHLQHSRD 405

Query: 373 AKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQ 431
             D+ V+              R       + V  +     L D   ++ L AL      +
Sbjct: 406 WNDMAVIAHDNDTVRTFGERLRAD----GVPVRYSSVTRPLKDEPFVQGLFALIELAGLK 461

Query: 432 EDDLS 436
           +  ++
Sbjct: 462 KQTIA 466



 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/365 (10%), Positives = 94/365 (25%), Gaps = 50/365 (13%)

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              I            R  N+ +D      ++   +E     +   + + +EQ       A
Sbjct: 675  ARIWQRVSLENSAAGRAANDRLDAAMRLFSYASGDESGGVLAAHTIGAFIEQVRALTIEA 734

Query: 565  HS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             S          V + T   A G    +VFL       + +   +          D    
Sbjct: 735  DSLAHTAPIDQAVTLTTPAGAAGRHWKLVFLPALQQGQWPNLAPRNTLFGGESLAD---V 791

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN------- 672
            +   + +      +        +      +   V +TRA ++ ++    N  N       
Sbjct: 792  MLHGELRDDIVTSAGRQDAQLAAVLASEQKSFLVALTRADERAVLSAVLNDDNVPSDFLY 851

Query: 673  ----------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
                           +   Y +V  +   +      +   +  +         +   ++ 
Sbjct: 852  GYLPERFDRERDADPEHRDYALVGGTGEFNGLDADPRGLVAAARSVLAGEPAGSPKAKDA 911

Query: 723  PLEREETIKQLMDEQKIPKKLFS---------PIKNDINEPYILNPSTIDTKGKTNLESL 773
                     + +         F+         P  +  ++   L+PS +D      +  +
Sbjct: 912  AAALALLASRGIAAADPAYWPFAKQSETDDSEPRDSHHSDVVTLSPSAVDRLWACPVCWM 971

Query: 774  LSDNQT--------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
            L +            N G +IH + Q          +N        +  L   +  +N+ 
Sbjct: 972  LENRFAGPRMGSVATNFGSLIHNVAQKATEAGLDLPQN--------HTALNDEENIENIT 1023

Query: 826  LSITR 830
              +  
Sbjct: 1024 QWMMA 1028



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 862  IIISGRIDQISI-----SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
            I +SGRID++         + + + +YKT   +  +          QL+ Y+  L   +P
Sbjct: 1146 IRLSGRIDRLERRVLSGGGEQVRLIDYKTGKQLSGQDMFSD----LQLACYQLGLA--FP 1199

Query: 917  NKSLVCL 923
             +     
Sbjct: 1200 EEGPRGA 1206


>gi|296331172|ref|ZP_06873645.1| DNA 3'-5' helicase IV [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|296151623|gb|EFG92499.1| DNA 3'-5' helicase IV [Bacillus subtilis subsp. spizizenii ATCC
           6633]
          Length = 773

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 22/222 (9%)

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           +I H+ IDE QD S  Q   +RS+               ++  +GD  QSIY+       
Sbjct: 539 KIKHLFIDEAQDYSPFQMTYMRSIF-----------PSASMTVLGDINQSIYAHA---IH 584

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
            V R     +      G+    + L  ++RST  I+ +   +     + +  + +    +
Sbjct: 585 GVKRMDACFE------GEPAEYVRLKRTYRSTRQIVELTKAMLQDGADIEPFNRNGEIPL 638

Query: 296 RHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISN 355
             +  R      +      + +   +                   S  I  R I      
Sbjct: 639 IFKRGREDLCQKLTKEIDRLKKQGHETIAVICKTAQQCIQAHAHMSEYIDVRLIHKENQT 698

Query: 356 MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                 +      + I+     VLV    +    T   R L 
Sbjct: 699 FQKGVCVIPVYLAKGIEFD--AVLVYDASEEHYHTEHDRRLL 738


>gi|254785005|ref|YP_003072433.1| hypothetical protein TERTU_0822 [Teredinibacter turnerae T7901]
 gi|237686099|gb|ACR13363.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
          Length = 909

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/367 (10%), Positives = 90/367 (24%), Gaps = 59/367 (16%)

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                  + V+I+    A GL    ++++    + +         +  ++      P   
Sbjct: 480 FQPQTRISPVQILGSLEAAGLPFDQLWVMGLDDEAWPPAPSPNPLLPLAVQVAHNTP--- 536

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWY 682
                                +  Y R L      ++ Q+     +   +++        
Sbjct: 537 ---------------QSSAEREFRYARNLTQRWLASASQVTFSYAATRDDKQLQPSPLVQ 581

Query: 683 DMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKK 742
                           +L     + E I    +    E   +     I +          
Sbjct: 582 AFAQTREAVPLFTAWEQLQWQSREMESIEDTNAGGVAEVQRIRGGAAILRDQAACPFQAF 641

Query: 743 LFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
               ++       +L                        RG ++H  +++++     +  
Sbjct: 642 ARHRLRASEVPEVVL------------------GLDAAERGNLLHHAMEIVWRKLGDQAG 683

Query: 803 NFI---TSYCTKNAKLWPAKEYKNLLLSITRL----LENPMMTTAMSCDSYSE---VSVS 852
                         +            S        LE   +   +      E      +
Sbjct: 684 LLAQSNERLLALVDEAIADALRDIRRKSFVGFRFVELETRRLAGLVCAWLELEKKRAPFT 743

Query: 853 GKINCPKKDIIISG--------RIDQISISQQNIFIFEYKTHHHVPQEIE-HIPYTHIAQ 903
              N  +KD+ ++G        R+D ++     +F+ +YKT     +  E   P     Q
Sbjct: 744 VVFNESRKDLTLAGLPLSVRYDRVDALA--DGGLFVIDYKTGLTAVKSWEGERPD--QPQ 799

Query: 904 LSIYEKI 910
           + +Y   
Sbjct: 800 VPLYAIA 806


>gi|225388059|ref|ZP_03757783.1| hypothetical protein CLOSTASPAR_01793 [Clostridium asparagiforme DSM
            15981]
 gi|225045882|gb|EEG56128.1| hypothetical protein CLOSTASPAR_01793 [Clostridium asparagiforme DSM
            15981]
          Length = 1216

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/614 (11%), Positives = 161/614 (26%), Gaps = 113/614 (18%)

Query: 406  GNDRFILTDHLAIK--DLMALGRF--ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
            G DR    +  A+    L    R   I   +   S          N +  ++        
Sbjct: 465  GADRRYSREEAAVMTDRLENYVRALGINGWKRWDSQWEAQFKGAENLNLQEL----NAFR 520

Query: 462  ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR-QQFISR 520
            +         + A    +    V + +   +   +     + +     A+  R  + ++R
Sbjct: 521  QWILAPLRPLREAMSKDATVASVTQALRNYLESMELREKLEEYQAYFAARGLRGDENLAR 580

Query: 521  FGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHT 579
               +V D ++E          +  +  +     L+     I+        ++V +  +  
Sbjct: 581  EYGQVYDRVEELFERLTGLLGDEKAERKSYAQILDAGFGEIQVGVIPATIDQVMVGDITR 640

Query: 580  AKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHL 639
             +     V+F V     V   +      +        G          R  +     +  
Sbjct: 641  TRLDGVQVLFFVGVNDGVVPQRKNGGSLL--------GDRDREFFKAHRLELAPTAREDG 692

Query: 640  KKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIK 699
                       LY+ +++ S +L+I     +++ K          VY  F          
Sbjct: 693  CMQKFY-----LYLMLSKPSRRLVITYAGRSADGKSLRPSVLLGEVYKLFPGLTAEDGST 747

Query: 700  LTNSINKDEWIAYE--------WSTHHPENTPLEREETIKQLMDEQKIPKKL-FSPIKND 750
            +   +                      P+      E++  +    +           + +
Sbjct: 748  VKWPVQTPRDGKETLIQGLKTYRDLKEPDAADGALEDSQWERKFLELYRWFFGQEDYREE 807

Query: 751  INEPYILNPSTIDTKGKTNL------------------------------------ESLL 774
            +         + + +G                                        E   
Sbjct: 808  VKLLVQAAFYSYEERGIGRAAARALYGKILQGSVTRLEQYASCAYAHFLRYGLELMERRE 867

Query: 775  SDNQTFNRGLIIH----KLLQV-------IFTLPEHKRKNFITSYCTKNAKLW------P 817
             + +  + G + H    +  QV          L E  R+  +    ++    +       
Sbjct: 868  YELEAVDMGNLFHQSIDRCFQVMKAQGRDWRNLTEEGRQGLVKESVSQVVADYGNTIMMS 927

Query: 818  AKEYKNLLLSITRLLENPMMTTAMSCDSYS--------EVSVSGKINC--------PKKD 861
               Y  L   + R+        A++             EVS S   N         P ++
Sbjct: 928  TARYAYLAGRVERM--TDRTIWALAEQVKRGDFEPAGFEVSFSAVDNLKAMRIALSPDEE 985

Query: 862  IIISGRIDQ--ISISQQNIF--IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL----KD 913
            + + GRID+  +      ++  I +YK+      ++  + Y    QL +Y        + 
Sbjct: 986  LQLRGRIDRMDLCEDGGTLYVKIIDYKSGGTSF-DLAALYYGLQLQLVVYLDAALEMEER 1044

Query: 914  SYPNKSLV-CLLIY 926
              P K +V   + Y
Sbjct: 1045 KNPGKEVVPAGIFY 1058


>gi|213406481|ref|XP_002174012.1| F-box DNA helicase protein [Schizosaccharomyces japonicus yFS275]
 gi|212002059|gb|EEB07719.1| F-box DNA helicase protein [Schizosaccharomyces japonicus yFS275]
          Length = 873

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/360 (11%), Positives = 105/360 (29%), Gaps = 33/360 (9%)

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
           + ++IL DE QD +    +VI                   +  VGD  Q IY F GA+  
Sbjct: 475 KYDYILFDEAQDFTRCMVDVIY------------RQKHARIVIVGDAHQCIYGFRGADAC 522

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                                 + L  SFR    +  + + V S+      L      T+
Sbjct: 523 AFNE----------TLYPSTKQLYLTKSFRFGNSVAAMANFVLSLKGERVKLCGAQQDTV 572

Query: 296 RHRSSR-IGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
              +   I      +    +      + N +    +        ++   ++   +     
Sbjct: 573 YRMAYAGINMDPNNERQRFIPHTIIFRTNKELILHSLRLAVALPKNIPIVILGSMKKKAF 632

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTD 414
            ++ +    ++G     +      L          T + +  + D ++S+V +    L  
Sbjct: 633 QLLRSGADLAHG-----RRPTYPKLREFPTWNAFETHIKKSAEEDPELSLVYDLAEELFS 687

Query: 415 HLAIKDLMALGRFILSQEDDLSFVCMLKSPL--FNFSEDDIFKICTQRHETETVYEYIQK 472
              +  L    + + +  DD +   +L +         +++      R + +++      
Sbjct: 688 DEFVNKLECCEQRLNTSSDDDNNGVILTTAHQAKGLEWENVQLGDDFRPKFDSISYTRIP 747

Query: 473 FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF 532
           ++     +   +   +               +  +L    G  ++      E  D + + 
Sbjct: 748 YSRFLQEEINILYVALTRAKKNLILNPMLTKYYALLK---GLARYAGGLVKEKNDEVKDL 804


>gi|322389862|ref|ZP_08063403.1| exonuclease RexB [Streptococcus parasanguinis ATCC 903]
 gi|321143443|gb|EFX38880.1| exonuclease RexB [Streptococcus parasanguinis ATCC 903]
          Length = 1088

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 93/881 (10%), Positives = 241/881 (27%), Gaps = 128/881 (14%)

Query: 113 RFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK 172
           +    K++ +        + L   Y E +     +DF DL     +LL++ +    +   
Sbjct: 98  KDQDLKVYGALRKDPQFIQQLVQLYHELQTAQ--MDFTDL-----ELLEEAEKREDLLA- 149

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           I + ++ +L+   Q     Q ++   L +              +   G      ++   A
Sbjct: 150 IFEAVSEMLV---QHRYESQSKIAFFLNQVEEGQLEEQLQDVAIVVDG------FTRFSA 200

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRST---ADILTVVDKVFSIPENAQGLSE 289
           E + ++                  +     ++R++    ++                +  
Sbjct: 201 EEEALISLLHR-----KGVEIVIGVYTSEKAYRASFREGNLYQASVDFLLQLAKTFEIQP 255

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                    S           ++       SQ   + E        L Q ++       +
Sbjct: 256 QYCGQAIEDSFSRITRMLEARYDF------SQVEDELEDQDRTAVQLWQTNTQKEELEFV 309

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A +I   +              + +DI VL+    D        + + + Y+I       
Sbjct: 310 AKSIRQRLHDG----------ARYRDIRVLL---GDVEAYQLQLKTIFDQYQIPFYLGRS 356

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF-NFSEDDIFKICTQRHETETVYE 468
             +  H  I+ + +LGR           + +LK+ L+ + ++ ++          E    
Sbjct: 357 EAMVHHPLIQVIESLGRIKQFNYQTEDVINLLKTGLYSDLTQAEVDAFEQYLRFAEVKGA 416

Query: 469 YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN-EVID 527
                      + +  ++ ++ L           F        +    F       ++  
Sbjct: 417 TKFHKPFTSNRQGKFNLEKLNTLRERVVEPLVPFFSQRKQKVTQLLTAFTEFLQEAQLSQ 476

Query: 528 VLDEFLNFTLRNEQNSYSS-LQELISELEQYPPTIKRAH--------------------- 565
            L   +      EQ  Y    +  +  LE+     +                        
Sbjct: 477 NLQALIKDLSLEEQERYDQVWKAFLHVLEELNLVFEDQELTVDDFLALLLSGMQLSQYRT 536

Query: 566 -SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL--------NDDP 616
             A  + V + +    + L +P V+ +    + F         +             +  
Sbjct: 537 VPATVDVVTVQSYDLIEPLTAPYVYAIGLTQERFPKIAQNTSLLSEEERQQLNEATQEGA 596

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRA---------SDQLIICKH 667
            + +   ++  +N  V+  + +   +        L   M  +          + + I   
Sbjct: 597 ELQVVTSENLKKNRFVAVSLLNAATNQLVLSAPSLVNEMKDSVSPYLVELTKEPIAIEWT 656

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
           +  +     +  T+  ++       +     +L+        +A            ++  
Sbjct: 657 TKQAQASSDDIGTYRALLARVIELHQEEIASELSAEEASFWGVAVRVLRKKLAAEGIQIP 716

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LESLLSD 776
           +   +L   Q     L +           L+ S ++   K              E     
Sbjct: 717 QISTELKSRQLQSDTLQALYPEGKAL--TLSASALNEYYKHQYAFYLRYVLGLQEDETIR 774

Query: 777 NQTFNRGLIIHKLLQVI----------FTLPEHKRKNFITSYCTKNAKLWPAKE--YKNL 824
               + G  +H++ + +            L E  R+    +   +        E   + L
Sbjct: 775 PDARSHGNFLHRIFEKVLKDGSDQAFDRRLNEAIRETSQEAEFQQLYGESGETEFIRQLL 834

Query: 825 LLSITRL---------LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQI--SI 873
           L +  +          +E     T     +++   +S       + + + G++D+I    
Sbjct: 835 LDTAKKTGRVLAQQNGIETIGEETLFGGSTHTSYPLS-----DGRLLQLRGKVDRIDQLR 889

Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
            +  + + +YK+        +       +QL  Y   ++D 
Sbjct: 890 DRGALGVVDYKSS-LTQFHYDKFFNGLNSQLPTYLSAIQDL 929


>gi|299147637|ref|ZP_07040701.1| putative ATP-dependent DNA helicase replicase [Bacteroides sp.
           3_1_23]
 gi|298514424|gb|EFI38309.1| putative ATP-dependent DNA helicase replicase [Bacteroides sp.
           3_1_23]
          Length = 687

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 34/172 (19%)

Query: 142 KKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSL 199
           +KN +L++ DL  +   +  L   +  +++         H+LIDE+QD S IQ++VI+ L
Sbjct: 437 RKNRILEYADLAPLAYLHIALNGNNAQSYV--------KHLLIDEMQDYSPIQYKVIQKL 488

Query: 200 TEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIE 259
                        P     +GD  QS+  +  +    + +                 I++
Sbjct: 489 Y------------PCRKTILGDTSQSVNPYGSSTANMIQKA-----------FATGEIMK 525

Query: 260 LPLSFRSTADILTVVDKVFSIPENAQGL-SEDSTTTIRHRSSRIGQVGTVQL 310
           L  S+RST +I +   K+    E    +   +    +  +++     G   L
Sbjct: 526 LCKSYRSTFEITSFAQKIQPNNELEPIIRHGEHPKILPFKNTEEEIQGIADL 577


>gi|156408169|ref|XP_001641729.1| predicted protein [Nematostella vectensis]
 gi|156228869|gb|EDO49666.1| predicted protein [Nematostella vectensis]
          Length = 746

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
            L   Y+  K    + D  D++ N    L++     W  ++       I +DE QD +  
Sbjct: 562 ALFRVYQRMKSTLGMFDEADIVHNLFTRLQQVGPPDWSIHR-------IYVDETQDFTQA 614

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQK- 246
           +  ++   + D          P  LF  GD  QSI    +F  ++ K      ++     
Sbjct: 615 ELSLLIRCSRD----------PNGLFFTGDTAQSIMRGIAFRFSDLKSLFYYAQQSYHSV 664

Query: 247 -RATNAGQKFSIIELPLSFRSTADILTVVDKV 277
              +       + +L  ++RS A IL +   V
Sbjct: 665 GIQSGVRVPDQLYQLTHNYRSHAGILKLASCV 696


>gi|83648356|ref|YP_436791.1| superfamily I DNA/RNA helicase [Hahella chejuensis KCTC 2396]
 gi|83636399|gb|ABC32366.1| Superfamily I DNA and RNA helicase [Hahella chejuensis KCTC 2396]
          Length = 675

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 88/308 (28%), Gaps = 35/308 (11%)

Query: 89  INKKSPDLKEKLKKSQD-EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL 147
           I  +  ++ EK+    + +++++  +          L+       +    +    K  + 
Sbjct: 365 ILDEFYEVIEKMSIETEGKYLEVLRKGRPRIKRTQRLSLW----PIFVEMKAFLNKEGIA 420

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
            FE+L+    + ++              +  H+L+DE+QD SL    ++ SL++      
Sbjct: 421 SFEELLRMALNEVENSQHP---------KYKHVLVDELQDFSLTALGLVASLSKLDGS-- 469

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
               S   L  VGD  Q IYS                  R            L +++R +
Sbjct: 470 ----SSNPLCLVGDGHQRIYS------------NTQVSLRHAGINVIGRSRRLKINYRMS 513

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             I        +       L E  T T   RS   G    V   +    Q  +       
Sbjct: 514 EQIRNFAHATIAGLSI-DDLDEGVTNTNGDRSIFKGASPRV--LKVTSFQQAATEIANWI 570

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
                      +     +  R  Y I ++          +       +    +R      
Sbjct: 571 VDIKSSSKGNIKDHEICITSRSRYFIDSLNREGVDIYELQADKQDPGETAPGIRYGTKKR 630

Query: 388 LITFLTRF 395
           +     + 
Sbjct: 631 VKGLEFKA 638


>gi|298711633|emb|CBJ32689.1| RecB family exonuclease [Ectocarpus siliculosus]
          Length = 337

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 864 ISGRIDQISISQQN-IFIFEYKTHHHV-----PQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           ++G +D++       + + +YKT             + I      QL IY  +++     
Sbjct: 203 VTGIVDRLDRCPDGTLRVVDYKTGKIPNLKYSEATNQRIMDEKFFQLQIYALLVERVLGE 262

Query: 918 KSLVCLLIYVSEP 930
                 L+Y+  P
Sbjct: 263 APGEMRLVYLKGP 275


>gi|257870357|ref|ZP_05650010.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257804521|gb|EEV33343.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 271

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 70/208 (33%), Gaps = 29/208 (13%)

Query: 761 TIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE 820
                         SD      G  +H   + +  + E  ++       +        K+
Sbjct: 39  AAALAKLKGDWQPSSDPIALLVGNYVHSYFEDLA-VHEKFKEENKNRMFSSRKPYGLLKD 97

Query: 821 YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFI 880
           +K     I RL+           +   EV V+G++      +   G+ID +++     + 
Sbjct: 98  FKIAEQMIDRLIIEDAFLNLYQGE--KEVIVTGELF----GVDWKGKIDCLNLEDD--YF 149

Query: 881 FEYKTHHHVPQEI--EHIPYT--------HIAQLSIYEKILKDSYPNK--SLVCLLIYV- 927
            + KT   + +    E             ++ Q+++Y ++LK  Y      ++     V 
Sbjct: 150 VDIKTSKDIHERKWNEVYGQRCTFIENFGYVLQMAVYCELLKQQYGKDFVPIIAA---VS 206

Query: 928 ----SEPKVFIIPQNKLNKAFAEISTKI 951
               SE K+  + ++K++     +   I
Sbjct: 207 KQTPSEAKLITLDEDKMSFELINLRDNI 234


>gi|152990114|ref|YP_001355836.1| hypothetical protein NIS_0365 [Nitratiruptor sp. SB155-2]
 gi|151421975|dbj|BAF69479.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 731

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/468 (11%), Positives = 131/468 (27%), Gaps = 86/468 (18%)

Query: 477 GISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDE----- 531
               F+  ++    L ++         ++ +    +   ++      E +  L E     
Sbjct: 259 PQKDFKEFLEAFDRLDNLNFSMGDSFIYSKLYRKLEALYRYCYFGEEEYLIKLSEEEIHT 318

Query: 532 -------------FLNFTLRNEQN-SYSSLQELISELEQYPPTIKRA------------- 564
                          +     E+     SL      +E     +K               
Sbjct: 319 FQSIDSWLKLESFIQSLATDKEKRVIEESLYLFGRLIENIEIDVKDMIKLLLERLKELSF 378

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
                 +V +M +  ++G     V +VD   +       + + +  +L    G+P    +
Sbjct: 379 DDVRGGKVTVMEMLESRGCRYEGVVIVDFNEEAVPKIGSEDLFLDTNLRKKTGLPTMTDK 438

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM 684
              + +    L+++ KK        L YV                  NE+    R +Y++
Sbjct: 439 ESLQKHYYYQLMRYAKKVA------LSYV-----------------KNEESDISRFFYEL 475

Query: 685 VYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF 744
            +       +  +  L     K+     + +   P+       E + +      +   L 
Sbjct: 476 PFQKQQEVPKRYENVLYTKTQKENVYEKDATFKLPKVLTPTTLEVLLR----CPLRYYLR 531

Query: 745 SPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNF 804
              +    +  I+     +   +       S    F       K++Q +           
Sbjct: 532 YIEQIKGPKEKIVGFDIHEAINEAVASRPESVQDYFE------KIMQRLTKN-------- 577

Query: 805 ITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII 864
           ++ Y     ++   ++ +        LL               +VS+         + I+
Sbjct: 578 VSRYEEYRLRVEWEEKLRKFAQEDFSLL-------------RGKVSIEKNHGRAFGNFIL 624

Query: 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
             R D++      IFI++YKT+        +    +  Q   Y  I +
Sbjct: 625 EARADRVVKRDGKIFIYDYKTNKTGNYLNVYEKDENKLQAEFYAYIWQ 672


>gi|325066919|ref|ZP_08125592.1| UvrD/REP helicase [Actinomyces oris K20]
          Length = 389

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/397 (10%), Positives = 106/397 (26%), Gaps = 43/397 (10%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSS 71
               + ++               ++L++ T + T+                +   + + S
Sbjct: 14  RAAHLLRE-GHGDGVVRVRTPAALALTILTTSLTMRPDPLPPPVLLAGAEEDSVLASMVS 72

Query: 72  FFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR--FNTYKMFKSTLASLTL 129
             +T    P +   ++    +  +L  +  +       + D        ++      L  
Sbjct: 73  T-VTWPGLPAEATGSRAFRSELRNLLARAGELGISADDLADLGHRLNVPIWGPASQLLRT 131

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
                    E + +   +D   L     + L      A    +     + +++D+ QD +
Sbjct: 132 WDAQGRASAERRAQTRKMDTARLQDRAVEALSSWGADAVTVRRPVP--DLVVVDDYQDCT 189

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
                ++ +L      G         +  +GD   ++ +F G  P  ++  +        
Sbjct: 190 AATARLLTALASPDPDGHRAQ-----VVVLGDPDVAVETFRGGTPSLLVAAEDH------ 238

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
            +G   + + L   +R    I      V         ++  +       + R     +V 
Sbjct: 239 -SGLAATRLRLTTCYRGNPAI----AAVIRDQSARVPVTGTTAHRQTTLAPRSSARSSVG 293

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKR 369
           L     S       PQ  +      +       + +AR +                    
Sbjct: 294 L----SSGASDAERPQAAAGVEVILASSIWQEHAHVARALRLE-------------HVHH 336

Query: 370 VIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
                 + V+VR   D   +    R       + +  
Sbjct: 337 GTAWSQMAVIVRSAADAETLARDLR----RRGVPLAS 369


>gi|218256866|ref|ZP_03474368.1| hypothetical protein PRABACTJOHN_00020 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225911|gb|EEC98561.1| hypothetical protein PRABACTJOHN_00020 [Parabacteroides johnsonii
           DSM 18315]
          Length = 988

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 106/343 (30%), Gaps = 64/343 (18%)

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           +IM V   + L+   + ++     +F  +      I  +L    G+P +      ++++ 
Sbjct: 559 QIMGVLETRALDFDRLIILSMNEGIFPLRKAANSFIPYNLRRGFGLPTYEH----QDSVW 614

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           +               RL+Y    RAS   ++    +   +     R  + + Y      
Sbjct: 615 AYHFY-----------RLIY----RASHVSLLYDTRSNGLQTGEVSRFVHQLHYHY---- 655

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                      I     +    S+  P     + EE + +L+  +    +  S    +  
Sbjct: 656 --------EEPIQNKLVVYNVSSSKTPALQVAKTEEVMNRLVAFRSGGTRAISASAVNTY 707

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI----------FTLPEHKRK 802
               L       +G    E +    ++   G I+HK+++ +            L +  RK
Sbjct: 708 LDCPLKFYFSVVEGIREEEEVSETIESNVFGSILHKVMEELYQPFCGKMVTADLLKAIRK 767

Query: 803 N-------FITSYCTKNAK-----------LWPAKEYKNLLLSITRLLENPMMTTAMSCD 844
           +          ++     K               +  +  +  +     +  +T      
Sbjct: 768 DTPMLTGAIARAFAEIFFKTDIVRPLTGQNFLIGEMIRKYVEKVLE--RDAKLTPF--RY 823

Query: 845 SYSEVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTH 886
             SE  +        K +I + G ID+I   +  + I +YK+ 
Sbjct: 824 IESEKQIKCLFPLTDKSNIQLKGFIDRIDEVRDTVRIIDYKSG 866


>gi|226951235|ref|ZP_03821699.1| DNA helicase II [Acinetobacter sp. ATCC 27244]
 gi|226838029|gb|EEH70412.1| DNA helicase II [Acinetobacter sp. ATCC 27244]
          Length = 583

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 25/174 (14%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           +D+I   + LL+        +  +  +   I IDE QDT+       + L          
Sbjct: 150 DDVIKCMSKLLQ----LGKFQKHLKNKFPIIFIDEYQDTN-------QDLATSIVNYLIE 198

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
           + S   +   GD  Q IY              +       +   K   I+   +FRS  +
Sbjct: 199 NDSGVLVGFFGDHWQKIYG-------------KDACGLVNSPSGKIVGIDKNANFRSDKN 245

Query: 270 ILTVVDKVFSI-PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           I+  ++++ S  P+N        T  + H +S  G+  T   W+  + + +++ 
Sbjct: 246 IVACLNRIRSELPQNEYNPCSQGTIKVFHSNSWDGKRLTANHWQGDLPKEETKA 299


>gi|302554827|ref|ZP_07307169.1| UvrD/REP helicase [Streptomyces viridochromogenes DSM 40736]
 gi|302472445|gb|EFL35538.1| UvrD/REP helicase [Streptomyces viridochromogenes DSM 40736]
          Length = 709

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 53/184 (28%), Gaps = 36/184 (19%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L + L+         R    T           +  +      E+  +         +   
Sbjct: 388 LGQNLRDLDAYLGASRRGRGTGLGPTRRRMVWSGVQRF----EQFLRDRGETTHLRVCAR 443

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
             +LL +                H+++DE QD    QW V+R+              P  
Sbjct: 444 AAELLGEEPAP----------YAHVVVDEAQDLHPAQWRVLRA---------AVAPGPDD 484

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           LFA GD  Q IY    +                           L L++RST +IL    
Sbjct: 485 LFATGDPHQRIYDSRVSLGSL-------------GIMTVGRSFRLRLNYRSTEEILAWSA 531

Query: 276 KVFS 279
           ++ +
Sbjct: 532 RLLA 535


>gi|2344806|emb|CAB05385.1| orf1 [Helicobacter pylori]
          Length = 321

 Score = 60.3 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 68/245 (27%), Gaps = 49/245 (20%)

Query: 450 EDDIFKICTQRHETETVYEYIQKFANCGISKF----QHVIKYIHELIHIAQFCSPHDFFT 505
            ++IF +         + +           K        +     L   A   SP     
Sbjct: 95  FEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKTLSDFFILYTKAPTHSPSALIQ 154

Query: 506 LILGAKKGRQQFISRFGNEVIDVLD----EF--LNFTLRNEQNSY--SSLQELISEL--E 555
            IL      Q F +R   E     D    EF  L    R  +     SSL +    L   
Sbjct: 155 HILE-SAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRF 213

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                I  + +     V +++VH +KGLE   V+++D     F +  +            
Sbjct: 214 LNGTLIGSSEATQGCGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGG------ 267

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
                                        EE  RL YV +TRA   L +    N   E  
Sbjct: 268 ----------------------------IEEERRLFYVAITRAKGNLWLSYAKNELRENA 299

Query: 676 SNQRT 680
             +  
Sbjct: 300 KPKGH 304


>gi|254386633|ref|ZP_05001930.1| helicase [Streptomyces sp. Mg1]
 gi|194345475|gb|EDX26441.1| helicase [Streptomyces sp. Mg1]
          Length = 772

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 79/269 (29%), Gaps = 32/269 (11%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
              P  +   ++   + S ++G  +  + A  L+ A       E       F        
Sbjct: 389 LLRPRARKLLLDALYAKSGQSGRHSDPELAAELRSAFDEDISTE--DAFIGFLNAWWPEL 446

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
               +   +  +    +   +       +   R                   L    ++ 
Sbjct: 447 TPRAVLAAMADERKLGRWSRRDLNPRETRQLARSLRRVGADGKGPLSVHDVALLDELQQL 506

Query: 141 K------KKNCVLDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEVQDTSL 190
                  K+   LD  + +    +L+  R+ + W R +       E  H+++DE QD + 
Sbjct: 507 LGAPARPKRKRDLDPLEQLSGLEELMPTREETQWERAERIAAERTEYAHVIVDEAQDLTP 566

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +QW ++                  T   VGD  QS       +P      +         
Sbjct: 567 MQWRMV-----------GRRGRMGTWTVVGDPAQS----SWTDPGEAAAARDE-----AL 606

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFS 279
             +      L +++R+ A++  V  +V  
Sbjct: 607 GTRPRRRFTLTVNYRNPAEVAEVASRVLK 635


>gi|167904504|ref|ZP_02491709.1| pathogenesis-related protein [Burkholderia pseudomallei NCTC 13177]
          Length = 576

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 26/179 (14%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              L   D++  T  L+++R     I          ILIDE QDT       ++S+ +  
Sbjct: 105 QGALSHTDVLHVTAWLIRERPTLQRILE---DRHPLILIDESQDT-------MKSVLDAL 154

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
           F    +     TL  +GD +Q IY      P           +        ++   L ++
Sbjct: 155 FELSMSRPGHITLGLLGDHRQRIY------PDGHDDLPSHVPED-------WARPALQMN 201

Query: 264 FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
            RS   I+ +++K++      +       T +   S      GTV+L+        ++ 
Sbjct: 202 HRSQQRIVDLINKIWDADIEGRT---QPKTGVPQHSRTEKNGGTVRLFVGDTKTSTAEK 257


>gi|18309581|ref|NP_561515.1| hypothetical protein CPE0599 [Clostridium perfringens str. 13]
 gi|18144258|dbj|BAB80305.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 706

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 28/147 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   +   KK+  + D   ++     L            K  ++  H++IDE QD S
Sbjct: 454 VLDIYDRFNGNKKEYTINDLAPILYLAIKL---------EGKKATKDYRHVVIDEAQDYS 504

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q++V+R LT             +    VGD  Q +  +  ++   ++   +I      
Sbjct: 505 PLQFKVVRELTG-----------TKYFTVVGDVNQRLIKY--SDLAPMMELGKIFDDVNP 551

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDK 276
                  I  L  S+RST +I+   +K
Sbjct: 552 ------EIYNLNKSYRSTYEIMEYANK 572


>gi|118577232|ref|YP_899472.1| superfamily I DNA/RNA helicase-like protein [Pelobacter propionicus
           DSM 2379]
 gi|118504737|gb|ABL01219.1| Superfamily I DNA and RNA helicases-like protein [Pelobacter
           propionicus DSM 2379]
          Length = 513

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 89/290 (30%), Gaps = 39/290 (13%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           +     +S  E+   I           +  I + V+ S               Q+   + 
Sbjct: 24  INKAVSMSPAETLF-ITAFAGAAKTSTLVMIAEAVATSKMLYLAFNKAIVNEAQKRFPSN 82

Query: 61  CIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF-----N 115
                   L+  F  +    + +           ++  +L    ++ +++   F     +
Sbjct: 83  VEVRTTHSLAFRFTAKGKKVRVSNYRAA------EIASELDIEYEKAVQVLSLFDHYCNS 136

Query: 116 TYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQ 175
                    A   + K +   Y+    ++  +   ++  +    LK+  +          
Sbjct: 137 ALPSISKIAADEEILKLVKTIYDRM--QSGAM---EITHSWY--LKEFQLLLVSGAIKIS 189

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK 235
             ++ L+DE QD + +   +   L             P    AVGD+ Q IY F GA   
Sbjct: 190 GYHYCLLDEAQDVNPVTLSIFTHL-------------PGRRIAVGDKHQKIYGFRGAIDA 236

Query: 236 RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285
            V  EK         +    SI+ L  +FR    I+   + +    +  +
Sbjct: 237 MVGEEK-------VKSTPGTSIMRLTTTFRCQQHIVDHANWILGTFKGEK 279


>gi|289626458|ref|ZP_06459412.1| hypothetical protein PsyrpaN_15177 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866384|gb|EGH01093.1| hypothetical protein PSYAE_03810 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 632

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 79/586 (13%), Positives = 151/586 (25%), Gaps = 114/586 (19%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVL---------DF 149
            + +  ++  + +   +  +   +T     L K +  H +   +    L         DF
Sbjct: 111 VIARIHEKIAEAQQHHDKPRTRAATRE--RLVKDIARH-QRHLEAVRHLTHFNYGAGSDF 167

Query: 150 E-------DLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
                   D+I    +L+++  +   +   I      + IDE QDT        R + E 
Sbjct: 168 GRGVLGHFDVISAAVELIEQSQLLRDV---IASRYPVLFIDESQDTRPEVVAAFRRIAE- 223

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                 T      L   GD  Q IY       +     ++               I  P 
Sbjct: 224 ------TTPVEFCLGFFGDPMQKIYLEGAGVIETAAGWEQ---------------ITKPE 262

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           +FR    +L VV+ +                       R    G   L +     +    
Sbjct: 263 NFRCPQRVLQVVNAI-----------------------REPDDG---LSQTRGRMNWVDG 296

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRK 382
           NP+    +  F  L  +   S+   ++   +      D   S+      +   +LV+V +
Sbjct: 297 NPEPVMGSVQFFLLRADDHRSMKLAKVREWMRRTNDDDHWVSDDPAADFR---VLVVVHR 353

Query: 383 RKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLK 442
                L         ND        +            L     ++L     +S    L 
Sbjct: 354 MAAARLGFPNLYAALNDNDAPPSIKEGLK---DGTAWPLRPFLNYLLPLATAVSENRKLD 410

Query: 443 SPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD 502
              F  SE  + +              + +      ++   +I     L+      S   
Sbjct: 411 VMTFLRSECPLLQPTALVGSDPV---AVLRALQASTTELARLIFSSDALLQDVLVHSQAA 467

Query: 503 FFTLILGAKKGRQQFISRFGNEV-IDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
               +       + +    G +   D  D  +       +     L      LE   P  
Sbjct: 468 GLLRL------DEAWTKYLGPDRTADDEDPEIPAVSAFLRCGVGELAGYRHYLEDLSPFA 521

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
            +                 KG E   V ++    +    +          +         
Sbjct: 522 TQQ--------------GVKGAEFERVLVLIDDEEGRGQRQFSYEKYFGIVEPSDTDL-- 565

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
                       + +   K S  +   RL YV  +RA+  L +   
Sbjct: 566 ------------ENLAQGKDSVMDRTRRLFYVCCSRATRDLAVVMF 599


>gi|194290035|ref|YP_002005942.1| helicase, c_term recb family exonuclease [Cupriavidus taiwanensis
           LMG 19424]
 gi|193223870|emb|CAQ69879.1| Putative helicase, C_term RecB family exonuclease [Cupriavidus
           taiwanensis LMG 19424]
          Length = 957

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/547 (10%), Positives = 132/547 (24%), Gaps = 103/547 (18%)

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP--------------- 444
               V     + L+   A   LM     +L   D  + + +LKSP               
Sbjct: 340 AGAPVRDETGWKLSTTRAAAALMRWFDLLLRDGDTAALLDLLKSPFCLPDVAARGAAIAL 399

Query: 445 ----------------LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYI 488
                           L                + E   +  ++ A+  I+         
Sbjct: 400 LEHQVRREGITGGWARLRQLFAHAPASTLQDAGDGEDADQAPRRAAHGLITVLADEAARW 459

Query: 489 HELIHIAQFCSPHDFFTLILGAKKGRQQFISRF-GNEVIDVLDEFLNFTLRNEQNSYSSL 547
                     +  +    +L     R    +   G++++D L          E   +++L
Sbjct: 460 PRGFAQHPLATWLERLDGMLDGLGMRAALAADDAGSQLLDALARLQELPRD-ETGGHATL 518

Query: 548 Q--ELISELE--QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
              E  + L         K   ++    + I+ ++ A+      V +V            
Sbjct: 519 SQGEFRAMLSALLESVAYKEPSASGPARITILPLNGARMRRFEGVVIVGCDDAQLPSSAA 578

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
           + M     +             +  +    +     +     E            +D ++
Sbjct: 579 ELMFFSNQM------------RRELDLEDREARFAQQARDLAEVLL--------NNDDVV 618

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +      S  +  +   W + +           +   T            ++       P
Sbjct: 619 LTWQRYGSRGEPHHVSGWIERLAACCARAGVSIEGAATPQA------HETFADVRGMPAP 672

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
                 +      Q        P +        L            LE++  + +  + G
Sbjct: 673 AAEPALVPVRWSAQAYNMLRRCPYQFFAGRMLGLA----------GLETVSDELEKRDIG 722

Query: 784 LIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC 843
             +H++L     L  HK  +         +          +   +   L           
Sbjct: 723 ETLHRVL-----LTYHKELHARRERGETLSDDQRLARLGEISDEVFGALMAEDGNAIAYY 777

Query: 844 DSYSEV---------------------SVSGKINC---PKKDIIISGRIDQISISQQNIF 879
             + EV                      +   I+      + + ++GRID++        
Sbjct: 778 RRWREVLPSYVAWQSAREAEGWFWRGGEIDAGIDLPMPDGQPLRLTGRIDRLDQGPGGAH 837

Query: 880 -IFEYKT 885
            + +YKT
Sbjct: 838 AVLDYKT 844


>gi|302332579|gb|ADL22772.1| ATP-dependent nuclease subunit B [Staphylococcus aureus subsp. aureus
            JKD6159]
          Length = 1158

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 111/905 (12%), Positives = 234/905 (25%), Gaps = 224/905 (24%)

Query: 180  ILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLR 239
            I ID   + S I++ +I+ L       K   S    L   G+  Q       +  ++   
Sbjct: 200  IYIDGFHNFSTIEYLIIKGLI------KYAKSVTIILTTDGNHDQ------FSLFRKPSE 247

Query: 240  EKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS 299
              R  ++ A              S+R         ++     E               + 
Sbjct: 248  VLRHIEEIANELNISIERQYFKQSYR-------FNNQDLKHLEQEFD---------ALQI 291

Query: 300  SRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
            +R+   G + + E    + +                         +ARRI   I +    
Sbjct: 292  NRVACQGHINILESGTMREEINE----------------------IARRIIVDIRD---- 325

Query: 360  DTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIK 419
                     + ++ +DI +L R      L   +       Y I    + +  +T H  ++
Sbjct: 326  ---------KQLRYQDIAILYRDESYAYLFDSIL----PLYNIPYNIDTKRSMTHHPVME 372

Query: 420  DLMALGRFILSQEDDLSFVCMLKSPLF--------------------------NFSEDDI 453
             + +L   I S       + +LK+ +                            + +D++
Sbjct: 373  MIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDEL 432

Query: 454  FKICTQRHET---ETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA 510
            F +            + E  +      +   + V   I               F      
Sbjct: 433  FNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVFDKILHFEKQMSQAETVKDFATAFYE 492

Query: 511  KKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ-----------------NSYSSLQELIS 552
                 +  ++   E  +  L+         +Q                 +   S++  + 
Sbjct: 493  SMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLE 552

Query: 553  ELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPS 611
              +     ++        ++V I T+  AK      V+LV                I   
Sbjct: 553  VFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDE 612

Query: 612  LNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                          K      +  +       Q +   + YV MTRA   +        S
Sbjct: 613  E------------KKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGNVTFSYSLMGS 660

Query: 672  NEKKSNQRTWYDMVYDSFHNDE---------------------------RVKKIKLTNSI 704
            +        + + +   F+  E                              +  L + I
Sbjct: 661  SGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLDDEI 720

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
              D W+         ++     +  +  L  + +  K   +  K+   +    + S  + 
Sbjct: 721  VADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEG 780

Query: 765  KGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNA 813
              +              E    + Q F+ G I H +L+ I      +          K  
Sbjct: 781  YQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYI----SERINGDFKPLDLKKI 836

Query: 814  KLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYSEVS-------------------VSG 853
            +    +  + +L  +   LL +      +S    + V                       
Sbjct: 837  RQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFET 896

Query: 854  KI----------------NCPKKDIIISGRIDQI--SISQQN--IFIFEYKTHHHVPQEI 893
                                    I I G+ID+I          + I +YK+       +
Sbjct: 897  SFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSS-EGSATL 955

Query: 894  EHIPYTHIAQLSI--YEKIL----KDSYPNKSLV-CLLIY--VSEPKV-----FIIPQNK 939
            +     +  Q+ +  Y  I+    +       +    L+Y  V EP++       I ++K
Sbjct: 956  DLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWADIDEDK 1015

Query: 940  LNKAF 944
            L +  
Sbjct: 1016 LEQDL 1020


>gi|308234384|ref|ZP_07665121.1| ATP-dependent nuclease subunit B [Atopobium vaginae DSM 15829]
 gi|328944200|ref|ZP_08241664.1| hypothetical protein HMPREF0091_10889 [Atopobium vaginae DSM 15829]
 gi|327491119|gb|EGF22894.1| hypothetical protein HMPREF0091_10889 [Atopobium vaginae DSM 15829]
          Length = 1080

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 70/281 (24%), Gaps = 84/281 (29%)

Query: 748 KNDINEPYILNPSTIDTKGKTNLESLLSDNQT----------FNRGLIIHKLLQVI---- 793
           K +I +  +L+ S I+   +                         G  +H++L+++    
Sbjct: 721 KAEIADKPLLSASQIEAYLRCPYLWFNERRLGLTTPDAGFSPMEAGTFVHRVLELVHTKL 780

Query: 794 ----------------------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR- 830
                                    P    K           + +    +   L    + 
Sbjct: 781 LDVAQSKSMHSDALYTIGARANAQAPARVSKTADEHTHMLLDQFFDEHLHHQYLKQSQKR 840

Query: 831 ----------LLENPMMTTAMSCDSYS-------------EVSVSGKI-----NCPKKDI 862
                      LE+  +   +  D +S                                +
Sbjct: 841 YKQLQIFVPHCLEDEGLLNQIRKDLHSFLDYESGLFEGFEPRFFELGFGKGEAAVEYAGV 900

Query: 863 IISGRIDQISISQQN-IFIFEYK--------------THHHVPQEIE-HIPYTHIAQLSI 906
            ++G ID++ +       I +YK              T  H   +    +      Q  I
Sbjct: 901 YVNGSIDRVDVDAHGNALIIDYKHKSTYKFLPSYALFTSAHPYTDGTYELAEH--IQTLI 958

Query: 907 YEKILKDSYPNKSLVCLLIYVSEPKVFIIPQNKLNKAFAEI 947
           Y  +L+  YPN  +V  L YVS  +   I           +
Sbjct: 959 YASVLQKLYPNLHVVGAL-YVSTKRNHAISGAVDENFIDRV 998


>gi|182418205|ref|ZP_02949505.1| ATP-dependent DNA helicase rep [Clostridium butyricum 5521]
 gi|237666183|ref|ZP_04526170.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378023|gb|EDT75563.1| ATP-dependent DNA helicase rep [Clostridium butyricum 5521]
 gi|237658273|gb|EEP55826.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 725

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 91/268 (33%), Gaps = 41/268 (15%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +   +D   ++     L            KI  +I HI+IDE QD S +Q+E+I+ +T  
Sbjct: 488 ELGYMDLSGILYLMVKL---------EGLKIKDDIKHIVIDEAQDYSYMQFEIIKEVT-- 536

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                       +   VGD  Q + +                 +   +   +    +L  
Sbjct: 537 ---------KCSSYTIVGDSNQRLITT------DDEPAMLHLDEVFGDMKTEIKKYDLNK 581

Query: 263 SFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQC 322
           S+RST +I+   ++          + +          +         +   +    D + 
Sbjct: 582 SYRSTQEIMEYANRFLKEDRIVPLVRKGEAVFEEETENAED-----CIETMLSIIEDYEE 636

Query: 323 NPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQA------KDI 376
           +  +     + ++   E  A IL +RI   I N+   D ++  GK  +          D 
Sbjct: 637 DGYENIAVIFSNTHDLEEYAPILKQRIG--IQNLDNEDILYKGGKVIIPAYLAKGLEFDA 694

Query: 377 LVLVRKRKDTPLITFLT--RFLKNDYKI 402
           +++V      PL+ ++   R L     I
Sbjct: 695 VIIVENNNVQPLVKYIMCTRALHRLSVI 722


>gi|326316689|ref|YP_004234361.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373525|gb|ADX45794.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 645

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 78/593 (13%), Positives = 168/593 (28%), Gaps = 100/593 (16%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK------YLNA 135
           K  +  EI ++  +L+E  K       +     N     +       L         + +
Sbjct: 108 KIWLNNEIRRRISELEEDSKNYSSRVRQATRDRNQADQDRYARNLEALGSVKTFNYGVGS 167

Query: 136 HYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEV 195
            Y        +L  ED++   + LL+ R +   +   +      + IDE QDT       
Sbjct: 168 DY-----AKGILGHEDILQFADFLLQNRPLFRRV---VALNYPFVFIDESQDTFPS---- 215

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKF 255
              + + F   +        L   GD  QSI+     +  R    +              
Sbjct: 216 ---VVKSFREVEAQMRGKFCLGFFGDPMQSIFMRGAGDIAREDHWRA------------- 259

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVV 315
             I  P +FR    IL V + V +  +   G+ +      +         G+ +++    
Sbjct: 260 --ITKPENFRCAKQILDVANAVRAHGD---GMKQVRGLHEKIDGELKLVEGSARMFVLPN 314

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
           + + ++   +   W++  ++  +  +   LA +I   +  M     +   G    +  K 
Sbjct: 315 TLNRNEALARVREWSAAANN-DEGWTTPDLAVKILVIVHRM-AASRLGFGGIYSALNDK- 371

Query: 376 ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDL 435
                           + + +++     V     F L                +S  ++ 
Sbjct: 372 ------------TSDAMKQGMQDGTGWPVRPFLSFALP-----------IVAAMSAGNEF 408

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQK--FANCGISKFQHVIKYIHELIH 493
           + + +L+          +    T R     + E           + +    +  I   + 
Sbjct: 409 AAMNLLREFSPRLKPGTL----TGRRVAGVLRELRTAVLRLVAMLDEAGTTVGDIAIHLR 464

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSL-QELIS 552
            +      + +  +LG       F+    +   +                  SL   ++ 
Sbjct: 465 DSGLFDFDERYERVLG-------FVQDISDVAQE------AEAADTAPVEGRSLDAAMVK 511

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            L      ++        +    T H  KG E   V +V                     
Sbjct: 512 FLRCAAQELRPYERYVSEDSPFATQHGVKGAEFDRVVVV---------------MDEDES 556

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
           +        +  +           ++  ++T     RLLYV  TRA   L++ 
Sbjct: 557 DYRTYNYERVFANADARAADRAQAQNGDENTWSRTLRLLYVCCTRAKRGLVLT 609


>gi|125622885|ref|YP_001031368.1| ATP-dependent nuclease subunit B [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|251764602|sp|A2RH76|ADDB_LACLM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|2909715|gb|AAC12965.1| exonuclease RexB [Lactococcus lactis subsp. cremoris MG1363]
 gi|124491693|emb|CAL96611.1| ATP-dependent nuclease subunit B [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300069623|gb|ADJ59023.1| ATP-dependent helicase/deoxyribonuclease subunit B [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 1099

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 77/740 (10%), Positives = 189/740 (25%), Gaps = 124/740 (16%)

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
               +         I   +         ++ +       +    + ++    +  + +  
Sbjct: 242 ITRFRNKFPVELRKIASSAVNEVYSKLTRILDLDSRFVITDEKIELKAEDEKYFRIWEAE 301

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDY 400
           +  +   R+A  I   I                KD  VLV    D        + + + Y
Sbjct: 302 NQKVEIERVAKEIRQKIIQGAF----------FKDFTVLV---GDPAAYEITLKEVFDLY 348

Query: 401 KISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN--------FSEDD 452
           +I         ++ H  +    +L     +       V +LKS ++             +
Sbjct: 349 EIPFFYAQEESMSQHPLVIFFESLFAIKKNNYRTDDVVNLLKSKVYTDANLDEEVIDYFE 408

Query: 453 IFKICTQRHETETVYEYIQKFANCGISKFQHVIK-----------YIHELIHIAQFCSPH 501
            +    +    +   E   +     I     + +           ++             
Sbjct: 409 YYVQKYKISGRKKFTEEFIESEFSQIELVNEMREKLLGSESPLQVFLGNNRKKTGKKWVS 468

Query: 502 DFFTLILGAKKGRQQF-----ISRFGNEVIDV-------------LDEFLNFTLRNEQNS 543
           D    +L               +   NE                 L+EFL          
Sbjct: 469 DL-QGLLENGNVMTNMNAYFSAAELQNEHQMADKHEQVWQMLISTLNEFLAV---FSDEK 524

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
             S++ L   L        R   AN + V +      +   +  ++ +      F     
Sbjct: 525 LKSVEFLDILLAGLKNAKYRQIPANVDVVNVKDYELVEPKTNKYIYAIGLSQTNFPRIKK 584

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
               +           + I Q+   N  +  L     +  Q     L+        + L+
Sbjct: 585 NSTLLSDEE------RLEINQTTDENQFIEQLNVANYQKNQFTVLSLINSA----KESLV 634

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           +      +NE+      +   + D+     +  +        +    +        +   
Sbjct: 635 LSMPQIMANEQGEFSPVFQLFLKDADEKILQKIQGVNLFESLEHIGNSRSVIAMIGQIER 694

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYIL-------------------------- 757
              E                   +K++ +   IL                          
Sbjct: 695 ELVESEETSEDKRVFWSSIFRILVKSNADFQKILLDLAKDIDTVNLAPDTLEQIYGDKIY 754

Query: 758 -NPSTIDTKGKTNLESLLSDNQTFN-----------RGLIIHKLLQV------IFTLPEH 799
            + S+ +       +  L +  +              G   H++ +       +      
Sbjct: 755 ASVSSFERFYNCEYQYFLENTLSLETFENIDINSKIVGNFFHEVFEKVMKETDLSAENFD 814

Query: 800 KRKNFITSYCTKNAKLWPAKE---------YKNLLLSITRLLE----NPMMTTAMSCDSY 846
           ++   +     KN   +  ++          + ++     +L+       + T ++  S+
Sbjct: 815 EKLTLVLQEVDKNYSRYFTQDATARFTWSNLEEIVRQTATVLKATVSTDELKTLLTESSF 874

Query: 847 SEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLS 905
             +  S   N    DI + GRID++     +     +YK+  H  + ++        Q  
Sbjct: 875 G-LPKSELGNFSVDDIYLRGRIDRLDQLSTDYLGAIDYKSSAHSFK-LQEAYDGLSLQFM 932

Query: 906 IYEKILKDSYPNKSLVCLLI 925
            Y  ++K ++PN+ +   L 
Sbjct: 933 TYLDVIKQAFPNQKIWGALY 952


>gi|329923154|ref|ZP_08278653.1| helicase IV [Paenibacillus sp. HGF5]
 gi|328941596|gb|EGG37882.1| helicase IV [Paenibacillus sp. HGF5]
          Length = 776

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 100/344 (29%), Gaps = 49/344 (14%)

Query: 31  INKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL--LSSFFLTQKFTPQKNIITQE 88
           +   + L  E     + + AQ+ + A   +   +          F T +   +K     +
Sbjct: 388 LAGRIDLMKEWMLKRLSEFAQSEKDAPWVEEQIQLLDTEDYQRAFQTMR---RKQNRKAD 444

Query: 89  INKKSPDLKEKLKKSQ--DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCV 146
                   K+ L K         +R     ++          + + L       ++    
Sbjct: 445 TFDDFDKEKDVLAKMVVSSRLKPLRRWIKRFRYVDVKG----MYRKLYTDESLFRRAAGN 500

Query: 147 LDF-----EDLIINTND------LLKKRDVSAWIRYKIDQEIN------HILIDEVQDTS 189
           L+      +++   T        LL +         ++ Q         H+++DEVQD S
Sbjct: 501 LEMLPEHWDEICNLTVASLDDKALLYEDATPFLYLKELLQGFRTNTSIRHVIVDEVQDYS 560

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
             Q E ++ L                +  +GD  Q+IY+   A                 
Sbjct: 561 AFQLEFLKRLF-----------PRAKMTVLGDLNQAIYAHGEALGSLENLVSLY------ 603

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
              +   +I L  S+RST +I+    ++       + +   +      R  R+     + 
Sbjct: 604 -GKEDTEVINLTQSYRSTYEIVNFTRQMI---PGGERIVPFNRQGEAPRVVRVNDEEELH 659

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                  +   +   Q  +     +   +     + A   A  I
Sbjct: 660 GAIVSDIRELHEQGFQYVAVICRTEEESRRVHQQLSADISARLI 703


>gi|307706580|ref|ZP_07643387.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK321]
 gi|307618035|gb|EFN97195.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK321]
          Length = 1091

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 70/721 (9%), Positives = 175/721 (24%), Gaps = 106/721 (14%)

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
           P +   L + S   + H +S+                   + +   ES   + +   +  
Sbjct: 230 PFSEGNLYQASVEFLHHLASKYQTPALDCSQTHEQMDSFDKASRLLESSYDFSELTLEVD 289

Query: 341 SASILARRI-----AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                  +I           ++             +  K   +L+    D        + 
Sbjct: 290 EKDRENLQIWSCLTQKEELELVARSIRQKLHANPNLSYKHFRILL---GDVASYQLSLKT 346

Query: 396 LKNDYKISVVGNDRFILTDHL----------------AIKDLMALGRFILSQEDDLSFVC 439
           + + Y+I         +  H                   +DL+ L R  L      + + 
Sbjct: 347 IFDQYQIPFYLGRSESMAHHPLTQFVESILSLKRYRFRQEDLINLLRTGLYTNLSQADID 406

Query: 440 MLKSPLFNFS-------EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
             +  +           +    K    + +   +     +      + F    +    L+
Sbjct: 407 AFEQYIRYLGINGLPAFQQTFTKSHHGKFDLGRLNALRLRILAPLETLFASRKQKAENLL 466

Query: 493 HIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                F         +       +        EV       L         S  SL++ +
Sbjct: 467 QKWNAFLKEGAVTKQLQNLTTTMETLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFL 526

Query: 552 SELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + L      +  R   A  + V + +      L +  V+ +                +  
Sbjct: 527 ALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDHLPKIAQNTSLLTD 586

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                    +        ++    +   +  A  QL++   S  
Sbjct: 587 EERQSLNQATEDG----------AQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLF 636

Query: 671 SNEKKSNQRTWYDMVYDSFHNDER-------------------------VKKIKLTNSIN 705
           +  +        ++V+  F   E+                          ++ ++++   
Sbjct: 637 NESESKESAYLQELVHFGFSRKEKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDREQ 696

Query: 706 KDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTK 765
              ++         +      E          K   K         ++ + L+ S +   
Sbjct: 697 DLTFVKVLARVMGKKLDQQGLENPALPTSPSSKQLAKDTLQALYPADQEFYLSTSGLTEF 756

Query: 766 GKTN-----------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
            +              E L       + G  +H++ +    LP+    +          +
Sbjct: 757 YRNQYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPDEDSFD--QRLEQAIQE 814

Query: 815 LWPAKEYKNLLLSITR-----------------LLEN-PMMTTAMSCD--SYSEVSVSGK 854
               +E++ +                       +L + P + T          E +    
Sbjct: 815 TSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEANFGGKEQAFIQL 874

Query: 855 INCPKKDIIISGRIDQISI--SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                + + + G++D+I    +   I + +YK+      +  H      +QL  Y   LK
Sbjct: 875 --DDGRSVFVRGKVDRIDRLKADGAIGVVDYKSS-LTQFQFSHFFNGLNSQLPTYLAALK 931

Query: 913 D 913
            
Sbjct: 932 R 932


>gi|315648225|ref|ZP_07901326.1| hypothetical protein PVOR_23234 [Paenibacillus vortex V453]
 gi|315276871|gb|EFU40214.1| hypothetical protein PVOR_23234 [Paenibacillus vortex V453]
          Length = 775

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 18/124 (14%)

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
           ++ +  I H+++DEVQD S  Q E ++ L                +  +GD  Q+IY+  
Sbjct: 542 FRTNTAIRHVIVDEVQDYSGFQLEFLKRLF-----------PRAKMTVLGDLNQAIYAHG 590

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            A                    +   +I L  S+RST +I+    ++    E     +  
Sbjct: 591 EALGSLENLVSLY-------GKEDTEVITLTQSYRSTHEIVDFTRQMIPGGERIVPFNRP 643

Query: 291 STTT 294
               
Sbjct: 644 GEAP 647


>gi|168214788|ref|ZP_02640413.1| putative helicase [Clostridium perfringens CPE str. F4969]
 gi|170713770|gb|EDT25952.1| putative helicase [Clostridium perfringens CPE str. F4969]
          Length = 706

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 28/147 (19%)

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   +   KK+  + D   ++     L            K  ++  H++IDE QD S
Sbjct: 454 VLDIYDRFNGNKKEYTINDLAPILYLAIKL---------EGKKATKDYRHVVIDEAQDYS 504

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
            +Q++V+R LT             +    VGD  Q +  +  ++   ++   +I      
Sbjct: 505 PLQFKVVRELTG-----------TKYFTVVGDVNQRLIKY--SDLAPMMELGKIFDDVNP 551

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDK 276
                  I  L  S+RST +I+   +K
Sbjct: 552 ------EIYNLNKSYRSTYEIMEYANK 572


>gi|261408071|ref|YP_003244312.1| hypothetical protein GYMC10_4279 [Paenibacillus sp. Y412MC10]
 gi|261284534|gb|ACX66505.1| conserved hypothetical protein [Paenibacillus sp. Y412MC10]
          Length = 776

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 62/202 (30%), Gaps = 27/202 (13%)

Query: 158 DLLKKRDVSAWIRYKIDQEIN------HILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHS 211
            LL +         ++ Q         H+++DEVQD S  Q E ++ L            
Sbjct: 523 ALLYEDATPFLYLKELLQGFRTNTSIRHVIVDEVQDYSAFQLEFLKRLF----------- 571

Query: 212 SPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
               +  +GD  Q+IY+   A                    +   +I L  S+RST +I+
Sbjct: 572 PRAKMTVLGDLNQAIYAHGEALGSLENLVSLY-------GKEDTEVINLTQSYRSTYEIV 624

Query: 272 TVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331
               ++       + +   +      R  R+     +        +   +   Q  +   
Sbjct: 625 NFTRQMI---PGGERIVPFNRQGEAPRVVRVNDEEELHGAIVSDIRELHEQGFQYVAVIC 681

Query: 332 YFDSLPQESSASILARRIAYTI 353
             +   +     + A   A  I
Sbjct: 682 RTEEESRRVHQQLSADISARLI 703


>gi|188995319|ref|YP_001929571.1| hypothetical protein PGN_1455 [Porphyromonas gingivalis ATCC 33277]
 gi|188594999|dbj|BAG33974.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 1007

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/608 (9%), Positives = 152/608 (25%), Gaps = 61/608 (10%)

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
              ++      E   +    + + +S  + A+ +   I  +         G +  I   D
Sbjct: 290 ESSENGQTSSLEDKPAPDIRIIRTASEIVQAKLLPQLIEELYPEGYSDKEGIQTAIILPD 349

Query: 376 ----ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR--FIL 429
               + VL    +    I     +  +   IS+       +   + +   +   R   +L
Sbjct: 350 TGMLMPVLNSLAETVGRINVTMGYPLSQSAISIFVEKWIRVQAEIRLIQKVPHFRTDAVL 409

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              + +    +L     +   +          E     + +           Q ++  + 
Sbjct: 410 DLLNSVLLTPLLTDHSRDLLSNREVTKQYYVPEERLWGDELTNLLFSRPDSGQQLLDRLF 469

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQ 548
            L+                   +              ++L+             S  S  
Sbjct: 470 LLLEKIAESMLFQPADSEYDQSEETNNMELEQIYHYRNILNRLRGLVESYAMDMSVRSAA 529

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            L+  L                 ++IM +   + L+   + ++         +  +   I
Sbjct: 530 LLLQGL--VSGVSIPFEGEPLVGLQIMGIDQTRSLDFKHLIILSVNEGKLPSRVYETTMI 587

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             +L    G+P+      +++          +   + E   +LY    R+     +    
Sbjct: 588 PYTLRRGYGLPVNEVNEATQS------YDFFRLIQRAESVTMLY--DARSDQ---LGGGE 636

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREE 728
            +   ++        +     H    +          + E +         +N      E
Sbjct: 637 ESRYIRQMRFLFDMPLKVQELHLTGSLPHSPAICVRKEGEVLTKLHRFLEYDNEESLDPE 696

Query: 729 TIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHK 788
                +    I   +  P++        +       +               + G ++H+
Sbjct: 697 ERLSALSASSINTYVACPLRFYFENVRGIREENASDELM----------AANDFGTVVHR 746

Query: 789 LLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS------------------ 827
            +++I+           + ++ +             +                       
Sbjct: 747 SMELIYKPCCGGGIVSSDILSRWLDPKNATIARIVRQAYTEEYLRSANTQGALSGLNHLY 806

Query: 828 -------ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQN-I 878
                  + R+LE+            SE  V G  +      + + G ID+I    +   
Sbjct: 807 CIMIEKYVRRILEHDKSLAPFRYID-SERRVKGSFSLSNGSRVRLHGIIDRIDELNEECR 865

Query: 879 FIFEYKTH 886
            I +YK+ 
Sbjct: 866 RIVDYKSG 873


>gi|168333753|ref|ZP_02692003.1| Sel1-like repeat [Epulopiscium sp. 'N.t. morphotype B']
          Length = 1016

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 161 KKRDVSAWIRYKID-QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
            + DV+  I    + ++ ++++IDE+QD S +Q  +I  L +              +   
Sbjct: 348 SENDVARMILTANNFEKYDYVVIDEIQDLSELQIYLISKLVQ----------PGGKIVWA 397

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
           GD  Q+IY      P      +   +       ++ +   L  +FR T  I  +++ +  
Sbjct: 398 GDINQTIY------PTFFNFGR--LKNLYYTYNKEITNKVLTKNFRGTKQITQLINNLVE 449

Query: 280 IPENAQGLSEDSTTTIRHR 298
             +   G S      +  +
Sbjct: 450 ERQKYIGTSAYDYEEVALK 468


>gi|312865918|ref|ZP_07726139.1| ATP-dependent nuclease subunit B [Streptococcus downei F0415]
 gi|311098322|gb|EFQ56545.1| ATP-dependent nuclease subunit B [Streptococcus downei F0415]
          Length = 1114

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 80/713 (11%), Positives = 196/713 (27%), Gaps = 147/713 (20%)

Query: 324 PQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKR 383
           P+         ++ +  +       +A +I N++             ++ KDIL+L+   
Sbjct: 284 PEISQEDKQALTIWEVVNQKEEVEAVARSIRNLLNQG----------VRYKDILLLL--- 330

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            D            + Y+I         ++ H  +  + +L R           + +LKS
Sbjct: 331 GDVEAYQLQIAKTFSKYEIPYYLGKEEAMSHHPLVNFVESLMRIKRYNFRAKDLLNLLKS 390

Query: 444 PLF-NFSEDDIFKICTQRHETETVYEYI--QKFANCGISKFQHVIKYIHEL-------IH 493
            LF +    DI K        +   +    + F     +      + I +        I 
Sbjct: 391 GLFKDLMNLDIDKFEQYVRFADIKGQAKFSKDFTVNREAGLDDEGQVIEKYDLVRLNQIR 450

Query: 494 IAQFCSPHDFFTL---------------ILGAKKGRQQFI------SRFGNEVIDVLDE- 531
            A      + F+                 L A              ++ G E  + + + 
Sbjct: 451 RAVMTPLLELFSSRSLLGSSLLTKKFLPFLEAIDLPANMAQLAKGQNQAGLEREEEVWQS 510

Query: 532 ---FLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPV 587
               L         +  SL + ++ L Q              + V I      +   SP 
Sbjct: 511 FCDLLEQMDDIFGGTKLSLDDFLALLGQGMMAANFKLVPATLDVVNIKDYKLIEPHSSPY 570

Query: 588 VFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEY 647
           VF +   +  F         +               + +    + S   +   + + +E 
Sbjct: 571 VFALGMTASNFPRLSQTTGLLTDEE-----------RQQINETLASQDRQGHFEISGQEE 619

Query: 648 NRLLYVGM----TRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +  +  M      AS  L++     +++ +        D+V   F    +      +  
Sbjct: 620 VKKFHAVMISLVNSASQSLVLSAPQISADSQDQLSPYLQDLVDLGFEPILKKPAGFASQP 679

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN-------------- 749
            +   + A              ++   +Q      + ++L   +K               
Sbjct: 680 TDLGTYKALLSRIIEANQLSQNQDLDKEQTTFWSVMVRRLRQKLKEVDLAIPTISQDLTV 739

Query: 750 ------------DINEPYILNPSTIDTKGKTN-----------LESLLSDNQTFNRGLII 786
                         ++P  L+ S++ T                 E           G+ +
Sbjct: 740 EPLSQETLDLLYPADQPLKLSASSLTTFYNNQYGYFLQKVLNLQEEDSIHPDFRQHGIYL 799

Query: 787 HKLLQVIFTLPEHKRKNFITSYCTK------------------NAKLWPAKEYKNLLLSI 828
           H++ + +  + +    +      ++                      +  +  + +  ++
Sbjct: 800 HRVFERL--MSKLDDSSNFDQLLSRTLSQVNQEEAFQQVYSYDQEAQFSREILEGIAQAM 857

Query: 829 TRLLENPMMTTAMSCDSYS------------------EVSVSGKINCPKKDII-ISGRID 869
           T +L +  +   +                        E+  + ++   ++  + I G+ID
Sbjct: 858 THILRDNHLVQVLDKAQARHYLGQRNWQKTPAQQKALELGFNLQLPLGQERKLEIRGQID 917

Query: 870 QIS-----ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           ++       S   + + +YK+       +E        QL  Y   +++S P 
Sbjct: 918 RLDQLSSSESPN-LGVVDYKSG-DKKFSLEEFYNGLSPQLLTYILAIRESMPQ 968


>gi|111219764|ref|YP_710558.1| putative DNA helicase [Frankia alni ACN14a]
 gi|111147296|emb|CAJ58944.1| putative DNA helicase [Frankia alni ACN14a]
          Length = 725

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/407 (12%), Positives = 101/407 (24%), Gaps = 78/407 (19%)

Query: 13  YELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSF 72
                  +       +  +             T+ K A  + +A Q Q      +   + 
Sbjct: 301 LTTFTSTMCDSLAADLDLLVHDPLERERITVATVNKIAYDVFRAWQPQPTILTDAEERAV 360

Query: 73  FLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKY 132
           + T             ++++   +   L +        +      +              
Sbjct: 361 WRTATRGLGLPFSESFLSEEWRQVI--LAQEILTEAGYQKARRAGRGRPLGPRQRAQVWA 418

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
               ++   + +     E + +    LL++                H++IDE QD S +Q
Sbjct: 419 AWRQFDRELRASGRWTHEMICVEAARLLERAPHRP---------YRHVVIDEAQDLSPVQ 469

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
           W  +R                   F  GD  Q IY                   R     
Sbjct: 470 WRFLR---------TAVKPGADDFFLAGDAHQRIYH-------------NRVSLRELGIQ 507

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRS-SRIGQVGTVQLW 311
                  L +++R+TA+IL       S+        +D    +   +  R    G V   
Sbjct: 508 VVGRSARLTVNYRTTAEILAW-----SLGMLRGEPIDDLDGGLDSVAGYRSELHGPV--- 559

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                       P+ + + ++ D + +       A ++   I                 +
Sbjct: 560 ------------PRLQGFATWNDEIREA------AEQVRAWIRA--------------GV 587

Query: 372 QAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAI 418
              +I V VR  K             +   +      R        I
Sbjct: 588 APDEIGVAVRSNK----FAESLLPALHRLGVPARLLARLPEQQPAPI 630


>gi|291008803|ref|ZP_06566776.1| RecB family exonuclease [Saccharopolyspora erythraea NRRL 2338]
          Length = 279

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 7/127 (5%)

Query: 767 KTNLESLLSDNQTFNRGLIIH----KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                           G ++H       ++       ++   +     K+     A++  
Sbjct: 41  DRPTPPRAGAWAHSTLGAVVHNVLRAFFELRPGKRTPEQVPVLLRRYWKSDGFADAEQVA 100

Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
                    L +      +  D+ + V+V   ++ P   II  GR+D++      + + +
Sbjct: 101 RHRRRAQEWLTS--YVEGLDPDA-APVAVERWVSAPMGSIIAEGRVDRLDERGGELVVVD 157

Query: 883 YKTHHHV 889
           YKT  H 
Sbjct: 158 YKTGRHA 164


>gi|213582255|ref|ZP_03364081.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 209

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 36/171 (21%)

Query: 533 LNFTLRNE-QNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESPVVFL 590
           +  T +    +    L  L + L                + V++MT+H+AKGLE P VF+
Sbjct: 2   VTATRQFSYNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFI 61

Query: 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650
           V     +F  +                                           EE  RL
Sbjct: 62  VGMEEGMFPSQMSLDEGW----------------------------------RLEEERRL 87

Query: 651 LYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLT 701
            YVG+TRA  +L +          K         + +         +++ T
Sbjct: 88  AYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRAT 138


>gi|220908006|ref|YP_002483317.1| hypothetical protein Cyan7425_2601 [Cyanothece sp. PCC 7425]
 gi|219864617|gb|ACL44956.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
          Length = 263

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 60/186 (32%), Gaps = 20/186 (10%)

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQVIFTL----PEHKRKNFITSYCTKNAKLWPAKEYK 822
           +  + +  S       G  +H+ L+ +              ++ +   +  +    ++  
Sbjct: 25  ERRVPAPSSFGSAA-LGTALHRTLRKVHGDWHYNDPFIPWPWVETCWGEFCQDLSLEQRS 83

Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK----KDIIISGRIDQI-SISQQN 877
             L  I  L     +   M    +  +++ G+I+           +SGR D+I  +    
Sbjct: 84  EGLK-ILGLYTKTHLAEPM----HRPLALEGRIDAELLFHHVPFKVSGRYDRIEYLDGGK 138

Query: 878 IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKVFIIPQ 937
           + + +YK+                 Q+ +Y   L+  Y        L+++   ++     
Sbjct: 139 LHLIDYKSAKDP-----APVEGLDLQIGLYYLALEQRYHAALARMSLLFLRTGELVSYEA 193

Query: 938 NKLNKA 943
              ++ 
Sbjct: 194 TLEHRQ 199


>gi|209364041|ref|YP_001424667.2| ATP-dependent nuclease subunit B [Coxiella burnetii Dugway
           5J108-111]
 gi|207081974|gb|ABS76477.2| ATP-dependent nuclease subunit B [Coxiella burnetii Dugway
           5J108-111]
          Length = 872

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 118/410 (28%), Gaps = 66/410 (16%)

Query: 525 VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
             + L           +Q +  +  +L+ +L  +     +  S+ ++ ++I+ +    G 
Sbjct: 420 RWENLLHEYAALDTFTQQQTRKNALQLLRQLAHHTL--FQPMSSQNSSIQILGLLETTGH 477

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
               +++     + +         +          P+ + +     +  +   K   + T
Sbjct: 478 YFDKLWIAGLNDKKWPPVASPNPFL----------PLSLQRRCQMPHASA---KREMEYT 524

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +  NRLL     +++  +I+       + + S           +  + +      L   
Sbjct: 525 LQLQNRLL-----KSAPAIILSAPLQEGDIQLSTSPLIRHFPEINNEDLQLPAWQPLKAH 579

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
           + K + +        P     E       L+  Q I                        
Sbjct: 580 LFKIKMLETIEDAQAPALQENEPMSGGSGLLQSQSIC---------------PFQAFAKV 624

Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLL----------QVIFTLPEHKRKNFITS---YCT 810
                 L    +      RG  +H+ L          Q + +  + + +N I     +  
Sbjct: 625 RLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNSSSDGELENIIDETITHLI 684

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN---CPKKDIIISGR 867
              KL            + +L++N      +         VS +          + +  R
Sbjct: 685 SQEKLIQPLFLNTEKKRLKQLIKN----WLLLEKKRPPFEVSQRETKRHIKIGPLRLEVR 740

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEI---EHIPYTHIAQLSIY-EKILKD 913
           ID+I     N FI +YKT      +    + +      QL +Y     ++
Sbjct: 741 IDRI---DNNCFIIDYKTGGQNSVDDWFGDRLKS---IQLPLYCAYAARE 784


>gi|315124915|ref|YP_004066919.1| hypothetical protein ICDCCJ07001_1412 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315018637|gb|ADT66730.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 712

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/509 (12%), Positives = 150/509 (29%), Gaps = 59/509 (11%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
              I+   R       I V+  D     + L + D   +     +    +S    L    
Sbjct: 252 MDEISHFVRKGLKPENIVVITPD-ESFCEFLRLFDKDNML----NFASGISIKESLFYQK 306

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
           F    +            E  +E  Q   +   +    +     E           ++F 
Sbjct: 307 FQALYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFE 366

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
            +L          +     +  +  E   F     +N   +L+ELI  L     +     
Sbjct: 367 KLLALF-----LENEKQELIYLIRKELY-FIKDLLKNQSLTLKELI-HLFFMQISQLSLS 419

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                +V +M +  ++GL    V LVD   ++   + + ++ +   +    G+  +  + 
Sbjct: 420 DVGGGKVTVMGLLESRGLCFDGVILVDFNEEIIPKRSVNELFLNNEVRKKAGLISYDRRE 479

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
             +                    R  Y  + + + ++ IC   N    K           
Sbjct: 480 NLQ--------------------RFYYESLMKNALEVSICFVENEEKSKSRFLDELDFDF 519

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +   H  ++     L       +           ++ P E   +  +    +   +  + 
Sbjct: 520 FYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSRFNLLENQKRTYYY 579

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI--FTLPEHKRKN 803
               ++ EP +L+                 +++  N+G  IHK+L++     +       
Sbjct: 580 RYILNLAEPRVLS----------------EESKAKNQGNFIHKMLEIYYKNYVNNDFDIK 623

Query: 804 FITSYCTKNAKL--WPAKEYKNLLLSITRLLENPMMTTAMSCD---SYSEVSVSGKINCP 858
              +   K  +       + +   L   +  +N       S     +++E+ ++  +   
Sbjct: 624 VFANLLDKEYQKYNISELDLEVFKLKFIQFAKNE--KEHFSKGFYVAHTELELNNILKLG 681

Query: 859 KKDIIISGRIDQIS--ISQQNIFIFEYKT 885
              I + G ID+I        I I ++K+
Sbjct: 682 ADSIKLKGTIDRIDSSKEGNLIMIIKWKS 710


>gi|71903239|ref|YP_280042.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS6180]
 gi|123640149|sp|Q48UB9|ADDB_STRPM RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|71802334|gb|AAX71687.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS6180]
          Length = 1071

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 74/653 (11%), Positives = 172/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLVDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFFKKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVPTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELISFGLPLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                +     +I++ 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIKVIDQEKNFHLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ I +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGIVDYKSSANQF-DIGTFYNGLSPQLVTYLAALKQIAPH 922


>gi|254384450|ref|ZP_04999791.1| UvrD/REP helicase [Streptomyces sp. Mg1]
 gi|194343336|gb|EDX24302.1| UvrD/REP helicase [Streptomyces sp. Mg1]
          Length = 713

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 56/184 (30%), Gaps = 33/184 (17%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            +H+++DE QD    QW V+R                  LF  GD  Q IY    +    
Sbjct: 454 YDHVVVDEAQDLHPAQWRVLR---------GAVAPGSDDLFITGDPHQRIYDSKVSLSSL 504

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP----------ENAQG 286
                                  L +++RST +ILT    + +            ++  G
Sbjct: 505 -------------GISVTGRTTRLRINYRSTEEILTWSTGILAPVAVEDLGGAGSDSLAG 551

Query: 287 LSEDSTTTIRHRSSRIGQVGTV-QLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL 345
                     H +    +   V  L ++V         P +    + F+ L  +    + 
Sbjct: 552 YRSVLHGRRPHVTGHGSEPAEVAALVDRVREWIAQGVRPSEIGVCARFNLLLDKVYERLA 611

Query: 346 ARRI 349
           A  I
Sbjct: 612 ADGI 615



 Score = 41.4 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 26/103 (25%)

Query: 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRN 629
             VR+ T+H  KGLE   V +V   +             + +L                 
Sbjct: 629 EGVRLATMHAMKGLEFRCVAVVGVTAGALPFGREVTPASVDAL----------------- 671

Query: 630 NIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                      +S       LL+V  TRA + L +      S 
Sbjct: 672 ---------QHESDLLRERCLLFVACTRAREALYVSWSGLPSK 705


>gi|257091070|ref|ZP_05585431.1| predicted protein [Enterococcus faecalis CH188]
 gi|256999882|gb|EEU86402.1| predicted protein [Enterococcus faecalis CH188]
          Length = 271

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 79/207 (38%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       + +SD +    G  +H   +    + E  +K   +   +        K
Sbjct: 38  EAAALAKLKGEWTPVSDPKALLVGNYVHSYFES-PEIHEAFKKENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +   EV V+G+I       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIYQGE--KEVIVTGEI----GGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDMHEKKWDERLNRKANFIERFGYVLQMTVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMICELEELKENI 234


>gi|241518211|ref|YP_002978839.1| pathogenesis-related protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240862624|gb|ACS60288.1| pathogenesis-related protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 639

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/511 (13%), Positives = 142/511 (27%), Gaps = 85/511 (16%)

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               ++  +      +LIDE QDT+       + L + FF    T+     L   GD  Q
Sbjct: 193 AKPAMQAVLVNRFPFLLIDESQDTN-------KILIDAFFALAATNRGKFALGLFGDTMQ 245

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284
            IY+                     N   +++     ++ RS   I+ + + + S  +N 
Sbjct: 246 RIYADG-------------LPDLGRNIPPEWARPVKRMNHRSPQRIVQLGNSLRSAVDNQ 292

Query: 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASI 344
             L+ D +             GTV+L+       D                         
Sbjct: 293 IQLARDDSMV-----------GTVRLFIIAADATDKPDKE-------------------- 321

Query: 345 LARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISV 404
             R+    ++ + G      +   + +  +  +   R          + + L  D ++S 
Sbjct: 322 --RKARERMAELCGDAGWKEDATVKTLTLEHHMAASR-----RGFAPMFQALDKDSRLS- 373

Query: 405 VGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML--KSPLFNFSEDDIFKICTQRHE 462
            G     L       + +A      +  ++ + +  L   SPL   S      +      
Sbjct: 374 TGLRTGELAGLRLFTERVAPLLAASTAGEEFAVMAHLRKNSPLLKRSV-----LANSTTP 428

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
            + +               ++    + +++         +    +        +      
Sbjct: 429 DDPLLPARVAVGALLALDPENPSTRLLDILECVAEHRLFEIPAAM--RPFIETEPAPVAP 486

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKG 582
              +  L++  N      + S SSLQ   + LE     I        N     T    KG
Sbjct: 487 ETTVQNLED--NEAEEEAETSPSSLQAWRAFLETPYNQIAPYAEYISNRGPFGTHQGVKG 544

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           L+   V ++            +                   +  +              +
Sbjct: 545 LQFDRVLVI------LDDSEARGFLFSYEKLFGAKPLSDQDRKNAAEGA---------DT 589

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
             +   RLLYV  TRA   L +  ++ + + 
Sbjct: 590 GIDRTRRLLYVTCTRAEKSLALVAYTESPDT 620


>gi|116747927|ref|YP_844614.1| ATP-dependent nuclease subunit B-like [Syntrophobacter fumaroxidans
           MPOB]
 gi|116696991|gb|ABK16179.1| ATP-dependent nuclease subunit B-like [Syntrophobacter fumaroxidans
           MPOB]
          Length = 908

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/567 (10%), Positives = 139/567 (24%), Gaps = 59/567 (10%)

Query: 386 TPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445
           +  +  L          +       +LT     +  +    F L  E       +L+SP 
Sbjct: 256 SQHLKDLLGAQLEGENAAYNLLAGDVLTSQSLWRAALLPLDFCLGGESGTQLFSLLRSPY 315

Query: 446 ------FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS 499
                    +     ++  ++   + +   +           +   +    L  +    +
Sbjct: 316 YGYFGARGRALAQWDRVWREQGIEKGLTALLGSLGGREDVLPRRGAELTEGLGALTDRGT 375

Query: 500 PHDFFTLILGAKKGRQQ----FISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELE 555
                         +Q       +         L   L+       +S     E  + L 
Sbjct: 376 RAASEWSAGLRSFWKQMEFPVIANERDRIAWQRLTGLLDGFDAELGDSSMRAAEFAAWLT 435

Query: 556 QYPPTIKRAHSANHNE-VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                     S   +  ++++     +GL    +F+    S V          +      
Sbjct: 436 AAGEKAPVQPSGFEDAGIQVIGELELRGLAFKRLFVPGFLSGVIPQPARSLPFLSVRER- 494

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
                               ++    +S  E    L       A + ++         E 
Sbjct: 495 ------------------RLVLGGTAESQFEFAAHLFGQVQAAARETVVSRPLLGEGGEP 536

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
                 W                + +              +       P  +     +  
Sbjct: 537 CLPSPFWPASEETMAPVIPWRHDLPVMQRARWVRDGIEGIAAAMERKEPAGKTHAGGESA 596

Query: 735 DEQKIPKKLFSPIKNDINEPYIL-----NPSTIDTKGKTNLESLLSDNQTFNRGLIIHKL 789
            +    ++L  P +  ++E  +L             G   L           RG  IH L
Sbjct: 597 PDLYRAERLRFPSEVSVSELELLLACAGRFFLRVILGLEALPVPTRGLDAAVRGRKIHAL 656

Query: 790 LQ----VIFTLP--EHKRKNFITSYCTKNAKLWPAKEY--KNLLLSITRLLENPM----- 836
           L      +  +P    +    +     +  +    ++    +  + + RLL         
Sbjct: 657 LAGFGRRLRGIPGGHEREPEALCRLLDEMVRKDIEEQARVAHWRVELARLLGGAEGAPGL 716

Query: 837 MTTAMS------CDSYSEVSVSGKIN---CPKKDIIISGRIDQISISQQ-NIFIFEYKTH 886
           +   ++       + +   +     +        + I GR+D++ +  +     ++YKT 
Sbjct: 717 LKEWLALECSRFGEGWRWTAFEPSFDNLKLRDCPVGIKGRLDRLDLHSELGCICWDYKTG 776

Query: 887 HHVPQEIEHIPYTHIAQLSIYEKILKD 913
              P   E +      QL +Y   ++ 
Sbjct: 777 A-APGMKEVLEDFKAPQLPVYLLAVRK 802


>gi|224536195|ref|ZP_03676734.1| hypothetical protein BACCELL_01061 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522179|gb|EEF91284.1| hypothetical protein BACCELL_01061 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 690

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 38/163 (23%)

Query: 140 AKKKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             +KN +L++ DL  +   +  L     S  +         H+LIDE+QD S IQ++VI+
Sbjct: 435 KLRKNRMLEYADLAPLAYLHLALDGNITSPGV--------KHLLIDEMQDYSPIQYKVIQ 486

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSI--YSFHGAEPKRVLREKRINQKRATNAGQKF 255
            L             P     +GD  QS+  Y    A+       ++             
Sbjct: 487 KLY------------PCRKTILGDASQSVNPYGSSTAD-----MIRKAF--------TIG 521

Query: 256 SIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHR 298
            I++L  S+RST +I     +        + +          R
Sbjct: 522 EIMKLCKSYRSTFEITDFS-QKIQTNHELEPIIRHGEPPAILR 563


>gi|260905944|ref|ZP_05914266.1| hypothetical protein BlinB_11466 [Brevibacterium linens BL2]
          Length = 732

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 105/306 (34%), Gaps = 39/306 (12%)

Query: 48  KKAQTLQ-QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQD- 105
           + A TL   A   +  E     ++  F    F P    + +        L ++ KK +  
Sbjct: 359 EIATTLAPSAVSHRGEEISAEEMAEIFERCSFLPVFACLERAAKIAVTTLGQRFKKDRRG 418

Query: 106 -EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEE----AKKKNCVLDFEDLIINTNDLL 160
            +    R+              L++ K   A  EE           L++ D+       L
Sbjct: 419 WKTADEREVRKQVLGLFPYKDPLSMYKAFLASREEKGLFVMAGRNRLEYADVFPLILTRL 478

Query: 161 KKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220
           +  +      ++  Q I H+L+DE+QD +  Q+ VI++L             P  +  +G
Sbjct: 479 RTTE------FETYQSIRHLLVDEMQDYTPAQYAVIKALF------------PCRMTILG 520

Query: 221 DEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           D  Q +  F  +    +   + I  +         + +E+  S+RST++I++   +  S 
Sbjct: 521 DADQKVNPFSSSSLSTI---REIFPE--------ANCLEMYRSYRSTSEIISFA-QGISH 568

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
            +  + +     +    R+     +  V +   ++  H +             +   +  
Sbjct: 569 NDRLESVDRHGRSPEVIRT--EDTLDEVAVITNLIESHSAGPQQSLGIVCRTIEQARELH 626

Query: 341 SASILA 346
            A   A
Sbjct: 627 DALSEA 632


>gi|150019591|ref|YP_001311845.1| helicase, putative [Clostridium beijerinckii NCIMB 8052]
 gi|149906056|gb|ABR36889.1| helicase, putative [Clostridium beijerinckii NCIMB 8052]
          Length = 724

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 26/144 (18%)

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           E K++   +D   ++     L            K+  EI HI+IDE QD S IQ+E+I+ 
Sbjct: 482 ENKERLSYMDLSGILYLMIKL---------KGIKVKNEIKHIVIDEAQDYSFIQFEIIKE 532

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSII 258
           +T             ++   VGD  Q + +                     +   + +  
Sbjct: 533 ITGC-----------KSYTIVGDSNQRLITTS------EEPAMLHLDDVFNDLNVEITKY 575

Query: 259 ELPLSFRSTADILTVVDKVFSIPE 282
           EL  S+RST +I+   +K     +
Sbjct: 576 ELNKSYRSTQEIMEYSNKFLDKDK 599


>gi|302134624|ref|ZP_07260614.1| hypothetical protein PsyrptN_24737 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 305

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 43/142 (30%), Gaps = 24/142 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++                 T   VGD  Q +Y F GA
Sbjct: 187 LSQRFGAILLDEGQDVNPVIANLVQI-------------QKITQVTVGDRHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    +  +K             L  SFR    +  V + + S       L     
Sbjct: 234 VDALNSPAMKDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQV 314
            T+  R+          L   V
Sbjct: 283 PTLVKRALPEDLPHRTYLHRTV 304


>gi|114775604|ref|ZP_01451172.1| predicted DNA helicase [Mariprofundus ferrooxydans PV-1]
 gi|114553715|gb|EAU56096.1| predicted DNA helicase [Mariprofundus ferrooxydans PV-1]
          Length = 524

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/472 (11%), Positives = 123/472 (26%), Gaps = 66/472 (13%)

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
            +LL++      +          +++DE QDT   QW ++++L                +
Sbjct: 103 AELLERSTALKELLA---NCYPTVIVDEFQDTDDEQWRIVKALAS-----------VTRV 148

Query: 217 FAVGDEKQSIYSFH-GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS-TADILTVV 274
           F + D  Q I+ +    +P+R+         +  + G          + RS    IL   
Sbjct: 149 FCLADRDQRIFDYRDDIDPRRIESLCDAVAPQTFDLGG--------ENHRSPRGGILGFA 200

Query: 275 DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD 334
           D V         +++      R           V +W     + +   +P          
Sbjct: 201 DAVLRNISPLPEVNDVKVVYYRSNRFPATVHAAV-IWTLSKLRKEGIEDPCVAILARSNR 259

Query: 335 SLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
            + Q S           T  + I    ++         A    ++    +          
Sbjct: 260 LVAQISGILSETNEYNGTQLSPIDHSVVWDAELSAAAGAVVASIMEWSNESA-------- 311

Query: 395 FLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIF 454
               +  ++V         +           +   S   D                    
Sbjct: 312 ----EAPVAVTLEAIAHFYE----------LKNATSPSKDAFEKVRKFRADGEKVRKSEN 357

Query: 455 KICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGR 514
                       ++   +F    +  ++     ++++         ++ +         R
Sbjct: 358 PRINAAKGLLAAFDEGVEFIGDPLVDWRTARSLLNDIR------PLNELYREA------R 405

Query: 515 QQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRI 574
              + R  + +   L E        E   Y     L++  +        A         +
Sbjct: 406 MVRLFRATDTLGAGLAEL-----WLETGHYQGAASLVT--DTLEYERLIAADQEPIGCVL 458

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           M++H +KG E   V +V+     F     ++            + I   ++ 
Sbjct: 459 MSMHKSKGKEFDGVVIVEGPYSGFFFDMTREQPPFERSRRLLRVAITRARTH 510


>gi|327198156|ref|YP_004306732.1| putative UvrD-type helicase [Pseudomonas phage KPP10]
 gi|297591682|dbj|BAJ09102.1| putative UvrD-type helicase [Pseudomonas phage KPP10]
          Length = 520

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 79/281 (28%), Gaps = 65/281 (23%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +   I +DE QDT+    +++                   L  VGD +Q IYSF G+  
Sbjct: 219 SQYKVIYLDEAQDTNDCVLDIV------------LRQQDSLLVMVGDPRQQIYSFRGSVN 266

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                              K    +L  SFR    +  V + +      AQ L       
Sbjct: 267 AMA--------------KIKAPECKLTTSFRFGEKVAEVAN-IILQNSKAQALHGWEKLE 311

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA-------R 347
            +             +WE      D       E    +       ++    A       +
Sbjct: 312 SK-------------VWESNGFLADGDAEGVPEIPEQHARLYRTNAALVWDAVNLIGQGK 358

Query: 348 RIAYTIS-----NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            +   I       ++ + T    G ++ ++ ++I  L           +     +     
Sbjct: 359 SVRLEIDTRDFIRLLESATALYQGDEKKVKHENI--LCYTSWQEFRDEYAESPGELGRVC 416

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            ++  D           D   + + +   E+D S   +L +
Sbjct: 417 RIIEGD-----------DQWKIFKALRDHENDPSADIVLTT 446


>gi|167043155|gb|ABZ07864.1| hypothetical protein ALOHA_HF4000ANIW141J13ctg1g33 [uncultured
           marine crenarchaeote HF4000_ANIW141J13]
          Length = 224

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 58/188 (30%), Gaps = 43/188 (22%)

Query: 777 NQTFNRGLIIHKLLQV-IFTLPEHKR----KNFITSYCTKNAKLWPAKEYKNLLLSITRL 831
               +RG  +HK+++  +   PE+              ++        +    + ++ + 
Sbjct: 64  RAAADRGSKVHKIIENCLSNKPENDLVGNYGELAARMFSQMVPALDKIDR---IRALEKG 120

Query: 832 LENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891
           L +                             I+GR+D I+     + + ++KT      
Sbjct: 121 LYSTRFG-------------------------IAGRVDCIAEYDNELTVIDFKTSTRKRD 155

Query: 892 EIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLI-YVSEPKVFIIPQ------NKLNKAF 944
                  TH+ Q S Y    ++    K     ++    + K+ +         ++L +  
Sbjct: 156 ---ERNETHLVQASFYSLAWEERTGEKVNQIAILTTTEDGKLDVYRDDPSNHVDRLEEMI 212

Query: 945 AEISTKIP 952
            E  +  P
Sbjct: 213 EECKSGQP 220


>gi|237796781|ref|YP_002864333.1| hypothetical protein CLJ_B3624 [Clostridium botulinum Ba4 str. 657]
 gi|229263216|gb|ACQ54249.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 709

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 68/221 (30%), Gaps = 26/221 (11%)

Query: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
                Y E    N  L  +D+I      +K  D+      K   EI HI+IDE QD S +
Sbjct: 456 QFLDIYNEF-NNNNKLTVDDIIAILYLKIKLEDL------KYKNEIKHIVIDEAQDYSFL 508

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           Q+ V++ LT+            +++  VGD  Q         P   L         +   
Sbjct: 509 QFVVLKELTDC-----------QSITIVGDVNQRTLPCKAEVPMLCL--------DSVFN 549

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  S+RST +I+   +K     +    + E          +    +  V  +
Sbjct: 550 RVDVEYFNLDKSYRSTKEIMEYANKHLKTNKIVPLVREGDPVKEVTVKNSKEAIDKVNYY 609

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
              +     +      +       +  E    +    I   
Sbjct: 610 LSYLENKGYENIAIITTTLEQGKVIGSELKKQMYINLIERE 650


>gi|319891942|ref|YP_004148817.1| ATP-dependent nuclease, subunit B [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161638|gb|ADV05181.1| ATP-dependent nuclease, subunit B [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1154

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 113/923 (12%), Positives = 245/923 (26%), Gaps = 234/923 (25%)

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQE 176
             +   T   L     +    +                 T + +  R V+   + K  ++
Sbjct: 146 AHLEPRTRHKLHDIGLIYEKLQARMSS---------EYITAEAMMNRLVTLIPQSKWLKQ 196

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
              I ID   + S  ++++I +L +         ++       GD+  ++  F       
Sbjct: 197 -AEIYIDGFHNFSTQEYQLIEALVKHVKSVTFALTTN------GDQD-ALSMFRK----- 243

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                R  ++ A   GQ    +      R  A  LT +++ F           D+     
Sbjct: 244 PSESLRHFEEMAHRVGQPLERLYFYTQHRFKAPSLTTLEQQF-----------DALQPES 292

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
           H ++  G                              ++       + +AR I   +   
Sbjct: 293 HHTADEG--------------------------IRILEAPTTREEVNEVARAILRDVRE- 325

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHL 416
                       +  + +DI +L R     P   +L   +   Y I    + +  +T H 
Sbjct: 326 ------------KQYRYQDIAILYR----DPSYVYLLDAILPQYDIPYNIDVKKSMTHHP 369

Query: 417 AIKDLMALGRFILSQEDDLSFVCMLKSPL---------------------FNFSED---- 451
            ++ L AL   + ++      + +LK+ +                               
Sbjct: 370 IMEMLRALIEVLQTEWQFEPLMRLLKTNVLTQMMPDSAYLVDLLENFAIERGIHGKRWLD 429

Query: 452 -DIFKICTQRHETETVYEYIQKFANCGISKFQH-----VIKYIHELIHIAQFCSPHDFFT 505
              F++   R       + + +       +          + ++    +AQ  +   F T
Sbjct: 430 PQYFELNQFRKMGIRPNDPLTEEETATFERVIDLKTKVFNQLLNFEEKLAQGSNAKAFAT 489

Query: 506 LILGAKKG----------RQQFISRFGNEVIDVLDEF-------LNFTLRNEQNSYSSLQ 548
               A +G          R     +  +E  + +D+        L+  +    +   +L 
Sbjct: 490 YFYEAMEGFELPNQLMTQRDMLDEQGQHEAAEEIDQIWNGLIRVLDDVVTVFGDRDMTLT 549

Query: 549 ELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMH 607
             +  L+     ++ +      ++V I T+  AK      V+++     V          
Sbjct: 550 RFLEVLDVGLNELEFSMIPQTLDQVTIGTMDLAKVDNKKHVYMIGMNDGVMPQAINGSGL 609

Query: 608 IMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH 667
           I  +          +  S + + +            Q +   + Y  MTRA++ +     
Sbjct: 610 ISDNEKKAFETYAGVQLSPTSDIL------------QMDEAFVCYFAMTRATETVTFSYS 657

Query: 668 SNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE 727
              ++  +  +  + + +   F N + ++       +             HP  T +   
Sbjct: 658 LMDASGAEREKSPFLNDIRQMFRNLDIIQ-------LTHQHARDTLSLIEHPHQTKVHLF 710

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPY-------------------------------- 755
           E  K  +DE  I    F+        P                                 
Sbjct: 711 EAFKTWLDEGLISDTWFTTYAVMAQYPQLNDGLTHLKSALTYNNDTVQLDGELTTQLYGK 770

Query: 756 --ILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRK 802
               + S  +                  E      Q F+ G I H +L+ I      K +
Sbjct: 771 AIHASVSRFEGYQNCPFKHYTSHGLRLNERTKYQLQNFDLGTIFHDVLKYI----AEKVE 826

Query: 803 NFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYS-------------- 847
                              + LL  +   LL +      +S    +              
Sbjct: 827 GRFNQLTELQIAQLTNDALETLLPHVQFNLLNSTSYYRYLSQRIGAIVQATLYAMKYQTS 886

Query: 848 -----EVSVSGKINCPKKD----------------IIISGRIDQI--SISQQN--IFIFE 882
                 ++         KD                I I G+ID+I     +    + I +
Sbjct: 887 HSQFKPIAFEKSFRKSPKDASELKAETLYTSQGMPIYIRGQIDRIDTYQKENKSFVNIID 946

Query: 883 YKTHHHVPQEIEHIPYTHIAQLS 905
           YK        ++ +   +  Q+ 
Sbjct: 947 YK-SSSSSASLDLVKVYYGLQMQ 968


>gi|154492641|ref|ZP_02032267.1| hypothetical protein PARMER_02275 [Parabacteroides merdae ATCC
           43184]
 gi|154086946|gb|EDN85991.1| hypothetical protein PARMER_02275 [Parabacteroides merdae ATCC
           43184]
          Length = 976

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 108/340 (31%), Gaps = 58/340 (17%)

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           +IM V   + L+   + ++     +F  +      I  +L    G+P +      ++++ 
Sbjct: 546 QIMGVLETRALDFDRLIILSMNEGIFPLRKAANSFIPYNLRRGFGLPTYEH----QDSVW 601

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
           +               RL+Y    RAS   ++    +   +     R  + + Y      
Sbjct: 602 AYHFY-----------RLIY----RASHVSLLYDTRSNGLQTGEVSRFVHQLHYHY---- 642

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
                      I     +    S+  P     + EE + +L D +    +  S    +  
Sbjct: 643 --------EEPIQNKLVVYNVSSSKTPALQVAKTEEVMNRLADFRSGGTRAISASAVNTY 694

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI----------FTLPEHKRK 802
               L       +G    E +    ++   G I+HK+++ +            L +  RK
Sbjct: 695 LDCPLKFYFSVVEGIREEEEVSETIESNVFGSILHKVMEELYQPFCGKMVTADLLKAIRK 754

Query: 803 N-------FITSYCTKNAKLWPAKEY--------KNLLLSITRLLENPMMTTAMSCDSYS 847
           +          ++     K    +          + +   + ++LE     T       S
Sbjct: 755 DTPMLTGAVARAFAEIFFKTDIVRPLTGQNFLIGEMIRKYVEKVLERDAKQTPF-RYIES 813

Query: 848 EVSVSGKINCPKK-DIIISGRIDQISISQQNIFIFEYKTH 886
           E  +        K +I + G ID+I   +  + I +YK+ 
Sbjct: 814 EKKIKCLFPLTDKSNIQLKGFIDRIDEVRDVVRIIDYKSG 853


>gi|311747178|ref|ZP_07720963.1| hypothetical protein ALPR1_12560 [Algoriphagus sp. PR1]
 gi|311302618|gb|EAZ83051.2| hypothetical protein ALPR1_12560 [Algoriphagus sp. PR1]
          Length = 857

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 21/134 (15%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +I +E   IL+DE QD   I+ EVIR L                LF  GD  Q +++   
Sbjct: 493 QIKEEFKCILVDEFQDFGTIEMEVIRRLA---------PKGENDLFLCGDIAQVVHT--- 540

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
                    K    + A       + +++  ++R++ +IL    +VF     ++    D 
Sbjct: 541 ---------KHHRIRSAGINIIPQNYLKIEKNYRNSREILAAAYEVFKNNTTSEMYQHDG 591

Query: 292 TTTIRHRSSRIGQV 305
              ++   +     
Sbjct: 592 FEILKPEFANFSSP 605


>gi|297194696|ref|ZP_06912094.1| UvrD/REP helicase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152399|gb|EDY64272.2| UvrD/REP helicase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 770

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/432 (14%), Positives = 124/432 (28%), Gaps = 51/432 (11%)

Query: 34  YVSLSMETGNPTILKKAQTLQQASQTQCIEERFSL--LSSFFLTQKFTPQKNIITQEINK 91
               + + G+P   K A  L      +   + +    L S F             Q    
Sbjct: 344 AEHPTSDLGSPLDDKAALDLWHTVCMEEGIDGYDAEFLDSEFRHVILAQGCGTQDQYFRA 403

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY-----------EEA 140
           + P      +  + +   +   +           +  L     A             +  
Sbjct: 404 ERPGRGRLQRPERRQIWSLVQAYRHRLAGPPRRTTHALVADEAARLEQHHMARVAEQQRY 463

Query: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
           K +    D          LL +   S     ++     H+++DE QD S   W ++R++ 
Sbjct: 464 KAEQGGRD----------LLHREAGSGM---RLKPRYQHVVVDEAQDLSASHWRMLRAMV 510

Query: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
            +          P  +F VGD  Q IYS             ++   R        +   L
Sbjct: 511 PE---------GPDDIFLVGDAHQRIYS------------HQVVLGRLGIRTPGRASRRL 549

Query: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG---TVQLWEQVVSQ 317
            L++R+T  IL     +    E+   L E   T   +RS   G          W      
Sbjct: 550 SLNYRTTHQILGSARGLVD-GESFDDLDEGPDTLDGYRSVLTGLAPQFWRAPDWATEKRA 608

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDIL 377
             +    + + + + + ++         A ++A T+ +          G     + + + 
Sbjct: 609 LATLIQERHDRYGTPYSAMAVCVPDGASATQLAATLGSDPFRIPAVEIGNDGPGKGEGVR 668

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           +    R        +     ++ ++     + F  TD    +      R +L      + 
Sbjct: 669 IGTMYRFKGLEFQRVFLASVSEGQVPHQRIEGFRDTDPQRYQREHRRARSLLFVAATRAR 728

Query: 438 VCMLKSPLFNFS 449
             ++ S     S
Sbjct: 729 DELVVSWNGRAS 740



 Score = 39.1 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 33/115 (28%), Gaps = 26/115 (22%)

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
              I          VRI T++  KGLE   VFL         H+ I+             
Sbjct: 653 AVEIGNDGPGKGEGVRIGTMYRFKGLEFQRVFLASVSEGQVPHQRIEGFRDTDP------ 706

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                  +        LL+V  TRA D+L++  +   S 
Sbjct: 707 --------------------QRYQREHRRARSLLFVAATRARDELVVSWNGRASR 741


>gi|115378874|ref|ZP_01466012.1| hypothetical protein STIAU_4106 [Stigmatella aurantiaca DW4/3-1]
 gi|310820060|ref|YP_003952418.1| hypothetical protein STAUR_2793 [Stigmatella aurantiaca DW4/3-1]
 gi|115364113|gb|EAU63210.1| hypothetical protein STIAU_4106 [Stigmatella aurantiaca DW4/3-1]
 gi|309393132|gb|ADO70591.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 322

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 52/176 (29%), Gaps = 27/176 (15%)

Query: 786 IHKLLQVIFTLPEHK-----------RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN 834
            H+L+Q  F     K                  Y          + ++ +  ++     +
Sbjct: 92  THRLMQDDFRHSSKKSYWTQKYRKPFTGLVEHEYAEAIPSEAWKQNWETVRSALAWFFAS 151

Query: 835 --PMMTTAMSCDSYSEVSV-SGKINCPKKDIIISGRID-QISISQQNIFIFEYKTHHHVP 890
             P +  ++    + EV   +   +   + + +    D        +  + ++KT     
Sbjct: 152 RWPALARSLKPAQWLEVDAGAEHSSFTLEGVKVFAIPDFAYVDEAGSPVVVDWKTGRV-- 209

Query: 891 QEIEHIPYTHIAQLSIYEKILKDSY--PNKSLVCLLIYVSEP--KVFIIPQNKLNK 942
                    +  Q+  Y   L   Y  P + +   L+Y++E   +   +    +  
Sbjct: 210 ------REGYDDQVLGYALYLSQRYKFPMEKVRAALVYLNEGLEQEVQVDPAAVEA 259


>gi|313200888|ref|YP_004039546.1| ATP-dependent DNA helicase pcra [Methylovorus sp. MP688]
 gi|312440204|gb|ADQ84310.1| ATP-dependent DNA helicase PcrA [Methylovorus sp. MP688]
          Length = 648

 Score = 59.6 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 70/601 (11%), Positives = 159/601 (26%), Gaps = 96/601 (15%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA----HY---EEAK 141
           ++ +  +  E L + Q  +     +    K  +        +  + A     Y    +  
Sbjct: 111 VSARIAEKIEALVQKQASYGPRVQQRTKDKDARDLERLHRQSGRIAAVKGFRYGTGSDYV 170

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           K   +L  +D++     L+ +       R  + ++   I +DE QDT+    E ++++  
Sbjct: 171 K--GILGHDDILRLVPYLIAE---RPLFRTLLARQFPFIFVDESQDTTTEVIEALKTVER 225

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
           +             L   GD  Q IY+      +                   ++ I  P
Sbjct: 226 E-------PGVTLCLGFFGDPMQRIYATGTGLVEA---------------EPNWADIPKP 263

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            +FR +  +L + + +     +   L +     +     R    G+  L+          
Sbjct: 264 ENFRCSTKVLNLANAI---RRDGDDLVQVPGQRLGPEGIRPTPEGSAHLFILPADDTRDA 320

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
              +   W +         +   L       I  ++                    ++ +
Sbjct: 321 NLARVRDWMAA----QTGDNRWRLGDGNEEQIKLLV--------------------IVHQ 356

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                     L   L +         D F+      +   +     I           + 
Sbjct: 357 MAAKRLGFGELYSALNSKA--PAAFKDGFLDGSAWPLSPCVKFLIPI----------AVA 404

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
            +         + +  +   E ET+           +   + ++  I E I      +  
Sbjct: 405 HTEGRQLEVMRLIREYSPLLEKETLAGANVA---ERLKTLRELVVSIAEGIAGNSNVTIG 461

Query: 502 DFFTLI-----LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQ 556
           D    +     L        ++           +   N   + +  S   +  + + L  
Sbjct: 462 DLLKQVYAAGLLILDPRLASYLDPEAAPPAPTAEGEENDDGQEDDESNKEMASMDAFLAC 521

Query: 557 YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDP 616
               +    +         T    KG E   V +V                         
Sbjct: 522 PASQLLAYQTYISERSPFSTQQGIKGAEFDRVLVV------LDDAESTHFQFSYEKYLGL 575

Query: 617 GIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
             P    +           I+  +++T +   RL YV  TRA   L +   +  S + ++
Sbjct: 576 KAPSDTDRKH---------IEAGEETTVDRTRRLFYVSCTRALKDLAVVLFTADSEQAEA 626

Query: 677 N 677
           +
Sbjct: 627 H 627


>gi|325287803|ref|YP_004263593.1| hypothetical protein Celly_2905 [Cellulophaga lytica DSM 7489]
 gi|324323257|gb|ADY30722.1| hypothetical protein Celly_2905 [Cellulophaga lytica DSM 7489]
          Length = 343

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 12/120 (10%)

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             LL++ +V   I  ++ +  +HILIDE+QD +   + +++++ +          S   +
Sbjct: 116 AKLLEQANVLGDINKRLSKYYDHILIDEIQDFAGHDFNLLKNICQ----------SETEI 165

Query: 217 FAVGDEKQSIYSFH--GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVV 274
             VGD  Q  +     G     +  +    QK    A        L  S+R T  +   +
Sbjct: 166 ILVGDFYQHTFDTSRDGNTNANLHSDYEKYQKIFEKAKIIPDTEYLNKSYRCTKSVCQFI 225


>gi|302134915|ref|ZP_07260905.1| hypothetical protein PsyrptN_26222 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 287

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 43/142 (30%), Gaps = 24/142 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++                 T   VGD  Q +Y F GA
Sbjct: 169 LSQRFGAILLDEGQDVNPVIANLVQI-------------QKITQVTVGDRHQQLYRFRGA 215

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    R  +K             L  SFR    +  V + + S       L     
Sbjct: 216 VDALNSPSMRDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGETIPLQGLGQ 264

Query: 293 TTIRHRSSRIGQVGTVQLWEQV 314
            T+  R+          L   V
Sbjct: 265 PTLVKRALPDDLPHRTYLHRTV 286


>gi|126732964|ref|ZP_01748725.1| hypothetical protein SSE37_17735 [Sagittula stellata E-37]
 gi|126706581|gb|EBA05657.1| hypothetical protein SSE37_17735 [Sagittula stellata E-37]
          Length = 978

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/497 (10%), Positives = 124/497 (24%), Gaps = 53/497 (10%)

Query: 476 CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGA----KKGRQQFISRFGNEVIDVLDE 531
               ++      + +           D+    L        G     +    E       
Sbjct: 458 RDADRWGAWAATLCD-RQQTGTLPLADWIERHLSLAEALTAGPDGDPAPLWAENAGRKLR 516

Query: 532 FLNFTLRNEQNSYSSLQELIS---ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVV 588
            L  TL+ E    + +                  R   A H ++ I     A+ + + ++
Sbjct: 517 ALTETLQFEAEHGTDMTARDYADLFGALVSREEVRDRDAPHPKILIWGTLEARVMGADLL 576

Query: 589 FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648
            L       +         +  S+    G+ +   +     +                  
Sbjct: 577 ILAGLNEGAWPESPAADPWLNRSMRAQAGLLLPERRIGLSAHDFQQAA------------ 624

Query: 649 RLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDE 708
                    A+ ++ + +   +   +    R    +        +R  +  L     +  
Sbjct: 625 ---------AAPEIWLTRSLKSDEAETVPSRWINRLTNLLNGLPDRNGRKALEEMRERGA 675

Query: 709 WIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKT 768
             A   +                      +  +   + I+  + +PY +           
Sbjct: 676 HWAALAAAAETPIEADPARRPSPAPPTISRPQELWVTSIRRLVRDPYAIY--ARYILRLK 733

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKE-----YKN 823
            L+ L+       RG++ HK+++                   + A++             
Sbjct: 734 ALDPLMQAPDALMRGVVTHKVIETFIRETVADPDRLTPDRLMQIARVLLDDVPFPTVRAL 793

Query: 824 LLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK------DIIISGRIDQISISQQ- 876
            L  + R    P    + +                           +  R D+I I+   
Sbjct: 794 WLARVARF--APWFCESEADRRQRAAPHLDNFETEGAASIPALGFTLKARADRIDIAPDA 851

Query: 877 NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD-SYPNKSLVCLLIYVSEPKVFII 935
              +++YKT      + +        QL +   +L+  ++PN +      YV+      +
Sbjct: 852 GAHVYDYKTGSAPSAKEQLYFDK---QLLLEAAMLQQSAFPNIAPR----YVAAATYIQL 904

Query: 936 PQNKLNKAFAEISTKIP 952
                 +  A ++   P
Sbjct: 905 KPGDPKEVAAPLADSPP 921


>gi|290990077|ref|XP_002677663.1| predicted protein [Naegleria gruberi]
 gi|284091272|gb|EFC44919.1| predicted protein [Naegleria gruberi]
          Length = 1189

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 91  KKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKST---LASLTLAKYLNAHYEEAKKKNCVL 147
           +   +  E LK        +     +     S       L L + + + YE  K ++  L
Sbjct: 305 EGIQNFIEALKLEMKTPDMLLREIISQHQRDSVNGERRKLMLLQNIYSEYENLKMQSKSL 364

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEIN-HILIDEVQDTSLIQWEVIRSLT 200
           DF DL++  + LL            +    + +ILID+ +   L Q  + + + 
Sbjct: 365 DFTDLLLQCHTLLTNPSSETLSNIGLSNRSDLYILIDDFELLDLPQHTLCKDII 418


>gi|16080398|ref|NP_391225.1| DNA 3'-5' helicase IV [Bacillus subtilis subsp. subtilis str. 168]
 gi|221311295|ref|ZP_03593142.1| hypothetical protein Bsubs1_18161 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315622|ref|ZP_03597427.1| hypothetical protein BsubsN3_18077 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320538|ref|ZP_03601832.1| hypothetical protein BsubsJ_18045 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324822|ref|ZP_03606116.1| hypothetical protein BsubsS_18196 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81555947|sp|O32215|HELD_BACSU RecName: Full=Helicase IV
 gi|2635858|emb|CAB15350.1| DNA 3'-5' helicase IV [Bacillus subtilis subsp. subtilis str. 168]
          Length = 774

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 78/263 (29%), Gaps = 48/263 (18%)

Query: 52  TLQQASQTQCI----EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS---Q 104
            L++  + +       E         + +K   +K       N    +  ++L  +   +
Sbjct: 405 KLEKKERRKDWVVHEAELLDKEDYLDVYKKLQERKRFSESTFNDYQRE--QQLLAAIIVK 462

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR- 163
             F  ++           T   L L       ++  K        + +   T        
Sbjct: 463 KAFKPLKQAVRLLAFLDVTQLYLQLFSGWGGKFQHEKM-------DAIGELTRSAFTDNK 515

Query: 164 ---DVSAWIRY--------KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
              + +A   Y        K + +I H+ IDE QD S  Q   +RS+             
Sbjct: 516 LLYEDAAPFLYMQDLIEGRKKNTKIKHLFIDEAQDYSPFQMAYMRSIF-----------P 564

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
             ++  +GD  QSIY+          R     +       +    + L  ++RST  I+ 
Sbjct: 565 AASMTVLGDINQSIYAHT---INGDQRMDACFE------DEPAEYVRLKRTYRSTRQIVE 615

Query: 273 VVDKVFSIPENAQGLSEDSTTTI 295
               +     + +  +      +
Sbjct: 616 FTKAMLQDGADIEPFNRSGEMPL 638


>gi|258591644|emb|CBE67945.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 387

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 72/218 (33%), Gaps = 30/218 (13%)

Query: 758 NPSTIDTKGKTNLESLLSDNQTFNR---------GLIIHKLLQVIFTLPEHKRKNFITSY 808
           + S + T     L+         +R         G  +H+ L  ++   +   +  ++  
Sbjct: 19  SASRLSTYESCPLQYRFRYIDRIHRTEESIEAYLGSRVHEALNALYRTLQLGGEPSLSDL 78

Query: 809 CTKNAKLWPAKEYKNL-LLSITRLLEN--PMMTTAMSCDSYSEVSV--------SGKINC 857
             +    W  + +  + ++   R +++   +    +     +               +  
Sbjct: 79  LKEYHWQWGQRWHNQVKIVKQDRSIDSYKELGERCLVNYYQAHQPFNHGQILGLEYHVAT 138

Query: 858 PKKDI---IISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
                    I G ID++  +      I +YKT   +P + +        QL++Y+  ++ 
Sbjct: 139 SLDPHGCYKIQGYIDRLVSVGSGRYEIHDYKTSGRLPSQGDLDVDR---QLALYQLAIEG 195

Query: 914 SYPN-KSLVCLLIYVSEPKVFIIPQNKLNKAFAEISTK 950
            +P+ K +  +  Y++  +   +   +   A   +   
Sbjct: 196 IWPDAKEIELVWHYLAFGR--ELRSRRTPDALERLKRS 231


>gi|300778444|ref|ZP_07088302.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300503954|gb|EFK35094.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 895

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/495 (12%), Positives = 130/495 (26%), Gaps = 91/495 (18%)

Query: 491 LIHIAQFCSPHDFFTLILGAKKGRQQFIS--------RFGNEVIDVLDEFLNFTLRNEQN 542
           L  +    S         G        I+           +   + +  F N     +  
Sbjct: 397 LHELLSGLSYFGLLQKAPGTNAYLDMLIAFCQQVKWLEIDDIQYENVSHFENAFRIIKNQ 456

Query: 543 SYS-SLQELISELE-----QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
               +++  +  LE                     ++IM +   + L    V L+     
Sbjct: 457 LTPYNIEIKMETLEILINQHINSESIDFQGEPLRGLQIMGLLETRLLNFENVILLSVNEG 516

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
                + +  +I      D      +      ++I        +     +   LLY  ++
Sbjct: 517 KLPLGNSQNTYIP----FDIRRFFDLHTFLENDSIY--AYHFYRLIQDAKNVHLLYNALS 570

Query: 657 RASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWST 716
                      +     +           + +    E   +I+     N  E IA +   
Sbjct: 571 --------SGVNTGEKSR-----------FITQIEMESSHEIEHLIIENSSEPIATQAIE 611

Query: 717 HHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSD 776
                   ER E  KQ +    +   L++PI  D     ILN S  D   +        +
Sbjct: 612 ISKTQIVQERLEKWKQKVSASHLTSYLYNPI--DFYLSKILNTSETDEIEE--------E 661

Query: 777 NQTFNRGLIIHKLLQV---------IFTLPEHKRKNFITSYCTKNAKLWPAKE------- 820
               N G ++H  LQ          +           I  Y     +    +        
Sbjct: 662 LSVKNYGNLVHYSLQEVYEMLKGKVLKESDLKNSVKAIDEYINIAIEKLKHQPEFYEKGM 721

Query: 821 ---YKNLLLSI-TRLLENPMMTTAMSCDSYSE-VSVSGKINCPK------KDIIISGRID 869
              +K +   +   +L + +    +   +  E V +  +             I   G ID
Sbjct: 722 NYIHKAIAKKVIENVLNHDL--ELIKQGNKLEIVDIERRFENIDFPLEGNDKISFFGFID 779

Query: 870 QISISQQNIFIFEYKTHHHVPQE---IEHIPYTH--------IAQLSIYEKILKDS--YP 916
           +I      + I +YKT           E     +          QL IY  +++    + 
Sbjct: 780 RIDKLNGTLRIIDYKTAKIKNLNVKIDEDNVAEYFHNSDRKQALQLCIYHYVVQHLPEFW 839

Query: 917 NKSLVCLLIYVSEPK 931
              +   +   ++ +
Sbjct: 840 GYPIETGIWSFADAR 854


>gi|72160468|ref|YP_288125.1| DNA helicase [Thermobifida fusca YX]
 gi|71914200|gb|AAZ54102.1| putative DNA helicase [Thermobifida fusca YX]
          Length = 696

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 109/338 (32%), Gaps = 50/338 (14%)

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRF 114
            A +     +   L S+       +     + +E  +    + ++++ +QD     R   
Sbjct: 334 GALRMLTGAQERELWSTIIRDLGLSFTPAFLAEEWRQVV--IAQQVRSAQDYLAAKRTGR 391

Query: 115 NTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKID 174
                 +               +E A ++  +   E + +    LL +RD          
Sbjct: 392 GRPLGSQQRAHVWQA----IWEFEAALREQGLWTHETVCVEAARLLAERD---------R 438

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           +   HI++DE QD S  +W ++R+   +          P  LF   D  Q IY       
Sbjct: 439 KPYRHIVVDEAQDLSPEKWRLLRAAVSE---------GPNDLFFAADTHQRIY------- 482

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                 +     R            L +++R+TA+IL     +    E    +     + 
Sbjct: 483 ------QHQVTLRDVGITIAGRSTRLRINYRTTAEILAWSLGLL-HGERIDDMDGGVESI 535

Query: 295 IRHRSSRIGQVGTVQ-----------LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
              RS   G   TVQ           +   V    DS   P++       + L +E + +
Sbjct: 536 TGCRSELHGPPPTVQGFASKEDELCAVAAAVREWMDSGVAPEEIGVAVRSNRLVKEVAET 595

Query: 344 ILARRI-AYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           + A  I    ++  +  D   S G    ++  +   LV
Sbjct: 596 LNAESIPVRELAGGLPEDGAVSVGTMHRMKGLEFRCLV 633


>gi|294782364|ref|ZP_06747690.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481005|gb|EFG28780.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
          Length = 898

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 39/155 (25%)

Query: 783 GLIIHKLLQVIFT--------------LPEHKRKNFITSYCTKN--------AKLWPAKE 820
           G I+HK L+ IF               L + + K ++  Y  +                 
Sbjct: 662 GNILHKTLEDIFKTNWKNILNDSNKLLLSKEEIKKYLEKYIWQENLKIENFMELYLNEVL 721

Query: 821 YKNLLLSITRLLE--NPMMTTAMSCDSYSEVS----VSGKINCPKKDIIISGRIDQISIS 874
           +  L+ +I + LE  +  +         +E          +      I+++GR D +  +
Sbjct: 722 FPRLIDNIEKFLEVLHEELKDTKIKRIEAEKESTTKNVAYLEHKGIQIVLNGRADLLIET 781

Query: 875 QQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK 909
           ++  +I ++KT  +              QL  Y  
Sbjct: 782 EKARYIIDFKTGSYDKN-----------QLEFYAL 805


>gi|158341049|ref|YP_001522216.1| hypothetical protein AM1_E0133 [Acaryochloris marina MBIC11017]
 gi|158311290|gb|ABW32902.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 55/191 (28%), Gaps = 21/191 (10%)

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLWP 817
           P +   + +  L S          G  +H  L  +            +  +         
Sbjct: 17  PKSYQFRYEHKLPSPTIFGS-TKLGNALHAALANVYKDWNYAYPLPSLDWFAVCWQHHTS 75

Query: 818 AKEYKNLLL--SITRLLENPMMTTAMSCDSYSEVSVS----GKINCPKKDIIISGRIDQI 871
                 +    +  +L     +           + +       +     +  +SGR D++
Sbjct: 76  ELTPTQIHEGWAALQLYYERYIAPL--PQIRKPLGIETKVRATLQVRNIEFTLSGRYDRL 133

Query: 872 SISQQNIFIFEYKTHH--HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
                 + + +YKT    + P  ++        QL  Y  IL+  Y        LIY+  
Sbjct: 134 DYIDDGLELIDYKTSKSVNPPPSVD-------IQLGFYYLILEQIYKKALKRLSLIYLRS 186

Query: 930 PK--VFIIPQN 938
            +  ++ +  +
Sbjct: 187 NEKLIYEVTPD 197


>gi|329934854|ref|ZP_08284895.1| DNA helicase II [Streptomyces griseoaurantiacus M045]
 gi|329305676|gb|EGG49532.1| DNA helicase II [Streptomyces griseoaurantiacus M045]
          Length = 295

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 54/186 (29%), Gaps = 32/186 (17%)

Query: 135 AHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             +E             +     DLL                  H+++DE QD    QW 
Sbjct: 6   ERFERLLHDRGETTHPRVCARAADLLADGPAP----------YAHVVVDEAQDLHPAQWR 55

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           V+R+              P  LF  GD  Q IY    +                      
Sbjct: 56  VLRA---------AVAPGPNDLFLTGDPHQRIYDSRVSLGSL-------------GIATA 93

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
                L ++ RST +IL    ++ +         E + T   +RS   G+    Q +   
Sbjct: 94  GRSFRLRVNHRSTEEILAWSARLLAPVTVEALEGEGTDTLAGYRSLLHGRSPRAQGYATR 153

Query: 315 VSQHDS 320
             + ++
Sbjct: 154 QKETEA 159



 Score = 37.6 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 26/109 (23%)

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             +     VR+ T+H  KGLE   V ++                                
Sbjct: 207 QVAQETEGVRLATMHAMKGLEFRAVSVLGVAEGTVPFTREITP----------------- 249

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                     +      ++       LL+V  TRA + L +      S 
Sbjct: 250 ---------READPLQHEADLLRERCLLFVACTRAREALSVSWSGPRSP 289


>gi|154244731|ref|YP_001415689.1| hypothetical protein Xaut_0781 [Xanthobacter autotrophicus Py2]
 gi|154158816|gb|ABS66032.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 886

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/438 (10%), Positives = 109/438 (24%), Gaps = 50/438 (11%)

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
           E       +          V     H A       V L+   ++ +  +  +   +   +
Sbjct: 394 EFSLQELRLPDGRDPGACAVWCPAGHLAAAPR-RFVRLLGLSTRSWPRRSGEDPLVPSHI 452

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                +       + R   +    +           R    G+ +A   L+      T+ 
Sbjct: 453 LSRDALDSESVTEQDRRTYMLVTAQAGGALVLSRSRRNAQGGL-QAPSPLVPHDPRRTTA 511

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
            K++   +      D                     W           +  +  +  +  
Sbjct: 512 LKRARVPSHAFSEADRLLARPEEAATSPVLRAADACWRNRRSPAVTAHDGRVREDHPVIA 571

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
               Q         +  D      +    +  +     E  LS       G ++H++L+ 
Sbjct: 572 RAIAQVQSATSLRLMLRDP--LAFVWRYALGWRSLVEDEQPLS-LDARAFGELVHEMLKR 628

Query: 793 IFTLPEHKRKNFITSYCTKN---------------------AKLWPAKEYKNLLLSITRL 831
                E +      +                            L              + 
Sbjct: 629 TVDALEPQPGYVRAARHEIENALDAASAAIAVQWPVERSTPPVLLWRHTLAAARDLALKA 688

Query: 832 LE-NPMMTTAMSCDSYSEVSV-----------------SGKINCPKKDIIISGRIDQISI 873
           L  +          S++EV+                  + ++  P   + I G ID++  
Sbjct: 689 LTLDEAFQPV--TRSWTEVAFGREDDGTNAAGDLLWPPTAQVIIPGAGLRIRGSIDRVDF 746

Query: 874 S--QQNIFIFEYKTHHHVPQEIEHIPYTHI-AQLSIYEKILKDSYPNKS-LVCLLIYVSE 929
           +     + + +YKT    P+  E +       Q   Y    +    +   ++  L+++  
Sbjct: 747 NSAHNGVRVSDYKTGVEPPKANEIVLGRGAELQRVFYALAARQLVADNPRVIARLVFLGT 806

Query: 930 PKVFIIPQNKLNKAFAEI 947
            +        +++A A+I
Sbjct: 807 DRPRPYSLPDVDQAIADI 824


>gi|330467200|ref|YP_004404943.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
 gi|328810171|gb|AEB44343.1| UvrD/REP helicase [Verrucosispora maris AB-18-032]
          Length = 699

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 25/205 (12%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
             H+++DE QD    QW ++R+L             P  +F + D  Q IY  H +  + 
Sbjct: 447 YRHVIVDEGQDLHPAQWRLLRALVA---------PGPNDMFLLADPYQRIYDSHVSLAQL 497

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            +  +                  L +++R+T +IL +  KV           +D T    
Sbjct: 498 GIEVR-------------GRTRRLSVNYRTTHEILDLSVKVLGGDATVGLDGQDDTLRGY 544

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNM 356
              +R G     +L   V    + +   ++          P     ++   ++   +  +
Sbjct: 545 RSVTRGGIP---ELAAHVSRDGECEALIERVGTWLDQGVEPHAVGVAVRTGQLVKAVGRI 601

Query: 357 IGTDTIFSNGKKRVIQAKDILVLVR 381
           +    I     KR      +  + R
Sbjct: 602 LNDAHIPVADDKRGTDGVRVATMHR 626



 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 26/109 (23%)

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                 + VR+ T+H  KGLE   + +V   + V    H                     
Sbjct: 611 DDKRGTDGVRVATMHRMKGLEFQCLAVVGLDAGVLPAPHALTSAAEDP------------ 658

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                         H  +   +    LL+V +TRA D L +      S 
Sbjct: 659 --------------HAHRQDLQRERCLLFVALTRARDVLYLSHSGTPSP 693


>gi|209559148|ref|YP_002285620.1| Putative ATP-dependent exonuclease, subunit B [Streptococcus
           pyogenes NZ131]
 gi|251764625|sp|B5XKR3|ADDB_STRPZ RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|209540349|gb|ACI60925.1| Putative ATP-dependent exonuclease, subunit B [Streptococcus
           pyogenes NZ131]
          Length = 1071

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 74/653 (11%), Positives = 171/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLVDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLKKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVPTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELINFGLPLLDKGKNYLSYDNSDIANYKALLSQIIAINRQDLIEMADQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TGVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                      +I++ 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIQVIDQEKNFQLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ I +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGIVDYKSSANQF-DIGTFYNGLSPQLVTYLAALKQIAPH 922


>gi|198432264|ref|XP_002122685.1| PREDICTED: similar to F-box only protein, helicase, 18 [Ciona
           intestinalis]
          Length = 963

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 24/107 (22%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +  + + IL+DE QD S    +++              +   TL  VGD  Q IY F  A
Sbjct: 537 LVSQYDVILLDEAQDCSECMRDILVK-----------QTKHATLVLVGDSHQQIYGFRHA 585

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFS 279
                L              +      L  SFR   +I  V D +  
Sbjct: 586 RDALTLV-------------RHTHSYYLTQSFRFGPEIAQVADALLR 619


>gi|134097652|ref|YP_001103313.1| hypothetical protein SACE_1056 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910275|emb|CAM00388.1| hypothetical protein SACE_1056 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 276

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 7/127 (5%)

Query: 767 KTNLESLLSDNQTFNRGLIIH----KLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK 822
                           G ++H       ++       ++   +     K+     A++  
Sbjct: 38  DRPTPPRAGAWAHSTLGAVVHNVLRAFFELRPGKRTPEQVPVLLRRYWKSDGFADAEQVA 97

Query: 823 NLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFE 882
                    L +      +  D+ + V+V   ++ P   II  GR+D++      + + +
Sbjct: 98  RHRRRAQEWLTS--YVEGLDPDA-APVAVERWVSAPMGSIIAEGRVDRLDERGGELVVVD 154

Query: 883 YKTHHHV 889
           YKT  H 
Sbjct: 155 YKTGRHA 161


>gi|71280433|ref|YP_269134.1| putative ATP-dependent DNA helicase [Colwellia psychrerythraea 34H]
 gi|71146173|gb|AAZ26646.1| putative ATP-dependent DNA helicase [Colwellia psychrerythraea 34H]
          Length = 622

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 56/184 (30%), Gaps = 38/184 (20%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +      +LIDE QDT+       + L E F   +  + +  +L   GD  Q IYS    
Sbjct: 196 LINRYPILLIDESQDTN-------KVLLEAFISVQENNKNKFSLGLFGDMMQRIYSGGKN 248

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
           +    L           +      II    ++R    ++T+++ +               
Sbjct: 249 DLTTSL---------PPDWETPAKII----NYRCPKRVITLINNI-----------RKGD 284

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYT 352
                        G V+L+    +  D      +  +     +  ++         IA  
Sbjct: 285 DQNVQVPKEDAIDGFVRLFIVDSNTTDKLELENKIRFQMAMLTHDED-------WNIAEE 337

Query: 353 ISNM 356
           +  +
Sbjct: 338 VKTL 341


>gi|282882603|ref|ZP_06291222.1| DNA helicase II [Peptoniphilus lacrimalis 315-B]
 gi|281297578|gb|EFA90055.1| DNA helicase II [Peptoniphilus lacrimalis 315-B]
          Length = 581

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 69/521 (13%), Positives = 131/521 (25%), Gaps = 125/521 (23%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             L   D++     +L      A  R         ILIDE QD+        + +   F 
Sbjct: 150 HYLHHNDVLKLFCTMLDN----AKFRRVFSDNYPLILIDEYQDS-------YKPIITRFI 198

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
                          GD  Q+IY  + A       + +  +K +              +F
Sbjct: 199 NFFIAEGIGPQFGFFGDAWQTIYQTNNACGAIEHSKLQEIKKGS--------------NF 244

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS   I+ +++ +                 +  +S+     G V +            + 
Sbjct: 245 RSAPRIVKLLNDI--------------RPDLPQQSAIDNFEGEVVV------VTCDDFSG 284

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
           ++ +  ++ D LP E   S L + ++  I   +  D              +I +L+   K
Sbjct: 285 ERRTERTFKDDLPAEELKSRLFQ-LSEHIKKNVSKDE-------------NIKILMITHK 330

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
                    R L        + +D                   +            L + 
Sbjct: 331 VLATQQGYERLL-------AIIDDGLRDKQDPF---------LLFFMNTVEPIYEALSTS 374

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                 D +        +                 K++     + +  +       +   
Sbjct: 375 NMQLLFDTLGIRRYPITKK------------ADKMKWKEFESQLKKARNGRAIDVINTIV 422

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              L               +  D +              YS  +  I  L          
Sbjct: 423 ETKLVPIPSLVDGYYHLYFDAPDTIYGLDATIQNVLDLDYSQFKAAIEFLYPESE----- 477

Query: 565 HSANHNEVRIMTVHTAKGLESP-VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
                      T H  KG E   VVF++  G   +  +        P +     IP+   
Sbjct: 478 ---------FSTEHGVKGEEYDNVVFVISKGWNQYQFET-----YAPMITGKVPIPVG-- 521

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                           K+++ E    L YV  +R   +L +
Sbjct: 522 ----------------KEASYERNRNLFYVCCSRPKKRLFL 546


>gi|86160293|ref|YP_467078.1| hypothetical protein Adeh_3877 [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776804|gb|ABC83641.1| hypothetical protein Adeh_3877 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1151

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 68/272 (25%), Gaps = 37/272 (13%)

Query: 675  KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
              +  +W D V  +               + +   +        P +   +R      + 
Sbjct: 778  PISDASWLDRVARTAPALPPEWTGTPVVDLARLAALRAPSGPLGPSDGIFDRGGPFPPVP 837

Query: 735  DEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI- 793
                      S +   +  P +     I    +      L +    + G ++H+++++  
Sbjct: 838  GIAPERPISASALGQLLQCPRLFLMRRILGWDEPASAPSLRELDPLSFGSLLHRVVELFY 897

Query: 794  --FTLPEHKRKNFITSYCTKNAKLWPAK------------------EYKNLLLSITRLLE 833
                    +R+  +  +      +                      E + L  ++   L 
Sbjct: 898  REHGAAFSRREGRLARWLELARGVADRAFDGLLSEYPLVGEGVRLKERERLHDALREFL- 956

Query: 834  NPMMTTAMSCDSYSEVSVSGKI---------NCPKKDIIISGRIDQISISQQNIFIFEYK 884
                           V V                 + + + G ID++        + + K
Sbjct: 957  ----AYDWKGGPRRFVGVELPFGTPEAPLSVEADGETLHVHGYIDRVDAEDGVTLVRDLK 1012

Query: 885  THH-HVPQEIEHIPYTHI-AQLSIYEKILKDS 914
            +   H     E  P      QL +Y+   +  
Sbjct: 1013 SGKAHPRAGSEAGPTALRDVQLGLYQLAARKL 1044


>gi|228991713|ref|ZP_04151653.1| UvrD/REP helicase [Bacillus pseudomycoides DSM 12442]
 gi|228768036|gb|EEM16659.1| UvrD/REP helicase [Bacillus pseudomycoides DSM 12442]
          Length = 782

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 25/137 (18%)

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            HI IDE QD S  Q+  ++ +                +  +GD  Q+IY          
Sbjct: 548 QHIFIDEAQDYSAFQYAFLKRIF-----------PHTKMTILGDFNQTIY---------E 587

Query: 238 LREKRINQKRATNAGQKF-SIIELPLSFRSTADILTVVDKVFS----IPENAQGLSEDST 292
              +    + +T  G++    I L  S+RST  I+    ++       P   +G     T
Sbjct: 588 HASENEFSQLSTLYGEELSEKIVLTRSYRSTKQIIEFTKQLIDGDEIEPFQREGKQPIIT 647

Query: 293 TTIRHRSSRIGQVGTVQ 309
                 +     V  ++
Sbjct: 648 EVKEGEAHHKKIVDQIE 664


>gi|145641651|ref|ZP_01797228.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021]
 gi|145273698|gb|EDK13567.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.4-21]
          Length = 445

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 58/199 (29%), Gaps = 21/199 (10%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLS 70
           ES + I   +                   +     +      + Q S      +  + L 
Sbjct: 248 ESADEISAIITNELVKDYPKDQLKSLNRKKYQVKRLGDWINKINQWSNNPRDYQINTTLK 307

Query: 71  SFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLA 130
            +FL           T +   K P                 ++     M    L+ LTL 
Sbjct: 308 DYFLQSSIEKNCEESTDKNKDKKPA-----TPFYSPIFAELEKRVNALMTPDLLSKLTLY 362

Query: 131 KYLNAHYEEAKKKNCVLD---------FEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181
                HY +  ++  +LD         F+DL+    + L+       +   I  +    +
Sbjct: 363 -----HYRQGLQQK-LLDYKLNHQEKSFDDLLRLLCEALQD-AQGDELAEMIRFQYPFAM 415

Query: 182 IDEVQDTSLIQWEVIRSLT 200
           IDE QDT   Q+ + +   
Sbjct: 416 IDEFQDTDSQQYAIFQKFI 434


>gi|317484426|ref|ZP_07943340.1| endonuclease [Bilophila wadsworthia 3_1_6]
 gi|316924314|gb|EFV45486.1| endonuclease [Bilophila wadsworthia 3_1_6]
          Length = 1110

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/377 (11%), Positives = 103/377 (27%), Gaps = 61/377 (16%)

Query: 554 LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
           LE          +     ++++ +   + L    VFLVD          I+   +  SL 
Sbjct: 628 LELVRAERVPFEADPLTGLQVLGMLETRLLRFSRVFLVDVTDDRLPGAPIRSPLLPDSLR 687

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
              G+P    + +        LI    +                  + +      +   +
Sbjct: 688 ALLGLPDTRNREQLAAYTFHRLIAGADEVWLY------------WQEGVETSGLFDGKKQ 735

Query: 674 KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER-EETIKQ 732
           +             +     +  +  L  +                     E+   ++K 
Sbjct: 736 RSRLVEELIWQEEQARGQRLKPGREPLRTAALDVRPPVRVRKVVPKTPAIREQIAASLKH 795

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
            +   ++   L  P++        + P          ++ +  D+     G+++H +L+ 
Sbjct: 796 PLSATRLDAYLTCPLRYYYERLCAIAP----------IDEVNEDDDPAAVGVLLHNVLR- 844

Query: 793 IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS 852
                       +           P  + K L       L+   +  A+  +S + +SV+
Sbjct: 845 --DFYAPAVGKTVRRDAQSGDPELPFLDEKALRALFRTALDASGLEAALPPESAAMLSVT 902

Query: 853 GK----------------INCPKK---DIIISGRI-------DQISIS---------QQN 877
           G                 ++  ++   +I + GRI       D++             + 
Sbjct: 903 GPERLGMFLRAQPEQTEVLSLEEEYDAEIRVGGRIRRLTGNLDRVDWREQEDPEGAIDEG 962

Query: 878 IFIFEYKTHHHVPQEIE 894
             I +YKT        +
Sbjct: 963 AVILDYKTGRIKALRPD 979


>gi|229814924|ref|ZP_04445262.1| hypothetical protein COLINT_01967 [Collinsella intestinalis DSM
           13280]
 gi|229809411|gb|EEP45175.1| hypothetical protein COLINT_01967 [Collinsella intestinalis DSM
           13280]
          Length = 1009

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/505 (10%), Positives = 122/505 (24%), Gaps = 86/505 (17%)

Query: 485 IKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY 544
           +  +  +  +A    P  F       + G +  ++    E +  +   L+          
Sbjct: 437 VSALKAICAVAGALPPSAFGWRDGSVRAGVEVSMAAKAIETLTDVAHELDVCQSAAVTVL 496

Query: 545 SSL--QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL---ESPVVFLVDTGSQVFS 599
             L                     A+   VR MT+  A  L       VF+ D     F 
Sbjct: 497 DGLTVSARRRTESTDFAHTGYEGDADMPCVRFMTLAEAALLPAGSVDAVFVADVDVDNFP 556

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
             H +      +           P ++ R+                    L    +  A 
Sbjct: 557 LSHEEGALATLAAKLGAASMELEPAARLRD--------------------LFDRALAAAR 596

Query: 660 DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHP 719
            + ++ + ++    K       +  +  +     RV  +      +    +         
Sbjct: 597 SRAVLARVTHDRQAKDRYPAAMWTELTAAVRAAGRVVTVTSVGEGDIAADLDTAAGMGLK 656

Query: 720 ENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT 779
                            + +      P       P  L+ S I+      L   +S    
Sbjct: 657 RRRVACLPPQELGEDAIRHLVLYQRDPNDPSRLVPRQLSASQIEGYVTCPLCWFMSSRVR 716

Query: 780 ----------FNRGLIIHKLL---------QVIFTLPEHKRKNFITSYCTKNA------- 813
                       +G  +H ++         + +  +     +  +               
Sbjct: 717 PQSLDAGFGNMEKGNFVHDVMYRLHAELTEEGVPRVTPENLEVCLEKLRDVFDCVRAEHA 776

Query: 814 -------------KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK 860
                              +   +L  +  ++       A    +Y E S +G +     
Sbjct: 777 RNKTSSSAALVAHSALEHVQVDEILPQLEAVVRYEAGALAPFAPAYLEYSFNG-LGVEYA 835

Query: 861 DIIISGRIDQISIS-QQNIFIFEYK-------------T-----HHHVPQEIEHIPYTHI 901
              + GRID++ +  +    + +YK             T           + + +P    
Sbjct: 836 GRPLGGRIDRVDVDVEGRAMVIDYKHRMDVNAFKLADPTVAKRDGVVPADDPDWLPEH-- 893

Query: 902 AQLSIYEKILKDSYPNKSLVCLLIY 926
            Q  IY + L+ S         L +
Sbjct: 894 TQSLIYAQALRHSELALDARGALYF 918


>gi|110632906|ref|YP_673114.1| UvrD/REP helicase [Mesorhizobium sp. BNC1]
 gi|110283890|gb|ABG61949.1| UvrD/REP helicase [Chelativorans sp. BNC1]
          Length = 569

 Score = 59.6 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 84/262 (32%), Gaps = 26/262 (9%)

Query: 65  RFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL 124
             + +    L  K     +     + +       ++ ++    +  R     Y   +   
Sbjct: 56  SRAAIRQVLLRCKEILTPSQRRAVVVQTYHAFCMEMLEAHGRLLHGRSVRFLYPGEERLQ 115

Query: 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDE 184
            S     +      +A  +  +  F+     T DLL   +  A +R  +      I++DE
Sbjct: 116 KSAFDGDWSVERKRQA-AEMGLYCFDLFAAGTADLL---EGCAALRGLVADRFPMIIVDE 171

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH-GAEPKRVLREKRI 243
            QDT   QW ++R+L +              +F + D +Q I+ +    +P+R+   +  
Sbjct: 172 FQDTDDNQWRIVRALAQ-----------VTDVFCLADPEQRIFDYRDDIDPRRLDILREA 220

Query: 244 NQKRATNAGQKFSIIELPLSFRST-ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                 + G          + RS  A IL   D V    +    ++ D        ++  
Sbjct: 221 VAIAEFDLGG--------ENHRSPNAGILHFADAVL-RNQGPLPVTPDVKQVSYWGNAFS 271

Query: 303 GQVGTVQLWEQVVSQHDSQCNP 324
             V    +W     +      P
Sbjct: 272 ATVHAAVIWTFSALRRKGVEKP 293


>gi|223042890|ref|ZP_03612938.1| ATP-dependent nuclease subunit B [Staphylococcus capitis SK14]
 gi|222443744|gb|EEE49841.1| ATP-dependent nuclease subunit B [Staphylococcus capitis SK14]
          Length = 1155

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 95/743 (12%), Positives = 199/743 (26%), Gaps = 152/743 (20%)

Query: 331  SYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
               +S       + LARRI   + +               ++ +DI +L R      L  
Sbjct: 301  EILESSNMREEVNELARRIIRDVRDHH-------------LRFQDIAILYRDESYAYLFE 347

Query: 391  FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL----F 446
             +     + Y I    + +  ++ H  ++ + +L   I S  +  + + + K+ +    F
Sbjct: 348  SIF----SLYDIPFNIDTKKSMSHHPIMEMIRSLIEVIQSNWNINAMLRLFKTNVLTSQF 403

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHEL--IHIAQFCSPHDFF 504
              S   I  +     E     +         + +F  + +  H L       +       
Sbjct: 404  KNSSYLIDLLENFALERGVYGKRWLDEEVFHVDQFNKMGRKSHALTPQEKETYEEVVLLK 463

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE-------QNSYSSLQELISELEQY 557
              ++      ++        V D    F       E       +     ++    + E+ 
Sbjct: 464  NHVIDKVLYFEK-AMSDATTVRDFATAFYESMEYFELPNQLMTERDELDVEGKHQQAEEI 522

Query: 558  PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSH----------------K 601
                        + V +         +   VF +      F                  K
Sbjct: 523  DQIWNGFIQILDDLVTVFDTQEMTLKQFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAK 582

Query: 602  HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQE--------EYNRLLYV 653
               K HI     +D  +P  +  S    +      +   +            +   + Y+
Sbjct: 583  VDNKRHIYMVGMNDGSLPQPVSSSSLITDEEKKYFEQNAQIELSPTSDILQMDEAFVCYI 642

Query: 654  GMTRASDQLIICKH--SNTSNEK-------------------------KSNQRTWYDMVY 686
             MTRA +++        N+ +EK                         +    ++   V+
Sbjct: 643  AMTRAREKVTFSYSLMGNSGDEKEISPFLSQIKDLYHHLDIVNIQQEHEEQPISFMQHVH 702

Query: 687  DSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSP 746
             +        +  L +      W+         E      +  I  L  + +  +   + 
Sbjct: 703  QTKIELFDALRTWLDHEDVDIRWLDAYQVIRDDEQLNDGLDYLITSLTYDNETVQLNETL 762

Query: 747  IKNDINEPYILNPSTIDTKGKTNL-----------ESLLSDNQTFNRGLIIHKLLQVIFT 795
             K         + S  +   +              E    + Q F+ G I H +L+ I  
Sbjct: 763  TKQLYGTTINASVSRFEGYQQCPFKHYASHGLRLNERSKYELQNFDLGDIFHSVLKHISD 822

Query: 796  LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDSYS------- 847
              E        +   K  K    +  + +L  +   LL +      +S    S       
Sbjct: 823  RVEGD----FKNLDRKKIKALTEEALELILPKVQFNLLNSTAYYKYLSRRIGSIVETTLN 878

Query: 848  ------------EVSVSGKINCPKKD----------------IIISGRIDQIS---ISQQ 876
                                    ++                I I G+ID+I        
Sbjct: 879  ALKYQTGFSKFIPQRFETGFRKSPRNKDELVAQPLHTKQGIPINIRGQIDRIDTYTKGDH 938

Query: 877  NIF-IFEYKTHHHVPQEIEHIPYTHIAQLSI--YEKILKD----SYPNKSLV-CLLIY-- 926
            +   I +YK+       ++     +  Q+ +  Y  I+            +    L+Y  
Sbjct: 939  SYVNIIDYKSS-TGSATLDLTKVYYGLQMQMMTYMDIVLQNKDRLELTDIVKPGGLLYFH 997

Query: 927  VSEPKV-----FIIPQNKLNKAF 944
            V EP++       I ++KLNK  
Sbjct: 998  VHEPRIKFDNWSKIDEDKLNKEL 1020


>gi|94994075|ref|YP_602173.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10750]
 gi|251764621|sp|Q1J7E5|ADDB_STRPF RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|94547583|gb|ABF37629.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10750]
          Length = 1071

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 74/653 (11%), Positives = 171/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLVDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLKKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVPTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELINFGLPLLDKGKNYLSYDNSDIANYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                      +I++ 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIQVIDQEKNFQLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ I +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGIVDYKSSANQF-DIGTFYNGLSPQLVTYLAALKQIAPH 922


>gi|326922179|ref|XP_003207329.1| PREDICTED: TPR and ankyrin repeat-containing protein 1-like
            [Meleagris gallopavo]
          Length = 2920

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 21/166 (12%)

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            L   Y++ + +    D EDL+ N +  L K     W        I+    DE+QD +  +
Sbjct: 1334 LFCLYQQIRSQRGYFDEEDLLYNLSQRLSKLGELPW-------SIHEFYGDEIQDFTQAE 1386

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRA 248
              ++              + P ++F  GD  QSI    +F  ++ +       +    + 
Sbjct: 1387 LALLMKCI----------NDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASKNTMDKK 1436

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                +   I +L  ++RS + IL++   V  + +     S D    
Sbjct: 1437 QRVRKPKRIYQLYQNYRSHSGILSLASGVVDLLQYYFPESFDRLPK 1482


>gi|257417010|ref|ZP_05594004.1| phage protein [Enterococcus faecalis AR01/DG]
 gi|257158838|gb|EEU88798.1| phage protein [Enterococcus faecalis ARO1/DG]
          Length = 271

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 72/207 (34%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  +D +    G  +H   +    + E  +K   +   +        K
Sbjct: 38  EAAALAKLKGEWTPENDPKALLVGNYVHSYFES-PEIHEAFKKENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +          +       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIYQGEK------EVIVTGEIGGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDIHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|302062890|ref|ZP_07254431.1| hypothetical protein PsyrptK_23129 [Pseudomonas syringae pv. tomato
           K40]
          Length = 210

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++                 T   VGD  Q +Y F GA
Sbjct: 55  LSQRFGAILLDEGQDVNPVIANLVQI-------------QKITQVTVGDRHQQLYRFRGA 101

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    R  +K             L  SFR    +  V + + S       L     
Sbjct: 102 VDALNSPAMRDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 150

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            T+  R+          L   V    ++ 
Sbjct: 151 PTLVKRALPDDLPHRTYLHRTVSGVIENA 179


>gi|254282614|ref|ZP_04957582.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
 gi|219678817|gb|EED35166.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
          Length = 815

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/609 (11%), Positives = 146/609 (23%), Gaps = 84/609 (13%)

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK-----NDYKISVVGND 408
              +     ++  + R  +   ++VL     D  L+ +  R           ++ V  + 
Sbjct: 153 QAELAEVARWAADRHRAGKGTTVIVLADMASDRALLEYALRAEFDCLDARYNELPVNFSL 212

Query: 409 RFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED-----DIFKICT----Q 459
              L+     + L+   R +L+  D    + +  SP    +        +  I       
Sbjct: 213 GMPLSATPMYRSLLCALRLMLTSVDRSDLLFLFTSPFLPLACRSEESPQLLVIQQLFALG 272

Query: 460 RHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHD---FFTLILGAKKGRQQ 516
           +   E          +   S    +I    E +         +    F  +L       +
Sbjct: 273 KPNLECTDIRHYLAKHDPTSPLISIIDRQREELRGRVQLGLGEWHSLFRRMLEHWGWPAR 332

Query: 517 F-ISRFGNEVIDVLDEFLNFTLRNEQNSYS-SLQELISELEQYPPTIKRAHSANHNEVRI 574
             +     +  D LD   +            +L E ++ LE                +++
Sbjct: 333 DGLDSLEFQQFDRLDNVFDDFESLASVRPEVALSEALNLLESVLNDTVFQPKTEATAIQV 392

Query: 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           +    A GL     +     S            I  +L +    P     S  + + V+ 
Sbjct: 393 LGPREATGLTFDAFWFCGARSTAVPGVPRLLGFIPAALQNQYHFPTADYASMLQKSEVTL 452

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-VYDSFHNDE 693
                                  AS +     +      ++     +          +  
Sbjct: 453 QGFRA------------------ASIEFYASWYQFEDGVEQYPSPVFPSCSTPQDIPDYW 494

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
            ++       I  D            E+        I +   E      +   I     E
Sbjct: 495 LLRTSAQRAEIPIDILEDDYGIPIDAEDGTSVGGSAILREQAECPFKAWVRRRIAVSAPE 554

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL----------QVIFTLPEHKRKN 803
           P  L                        RG ++H +L            +  L     +N
Sbjct: 555 PEQL------------------GLSPIERGNLLHAVLYEVWGRIINRDQLLALSMDGLEN 596

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRLLENP-----MMTTAMSCDSYS----EVSVSGK 854
            +     +       ++ +  + +    LE       ++   +   S +     VS    
Sbjct: 597 LVRGVLDQIFGEHIHQDVRRRVGAACLELEALCTYRVVLDWLLLERSRNGDFQVVSREDS 656

Query: 855 INCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEK---- 909
                  +  S R+D+I       + + +YK+                 QL  Y      
Sbjct: 657 RRLDLGGLTFSLRVDRIDRLASGEMLMIDYKSGGVGSASYWFGERPSDPQLPAYALSQDR 716

Query: 910 ----ILKDS 914
                    
Sbjct: 717 VQGIAWARL 725


>gi|310641441|ref|YP_003946199.1| ATP-dependent DNA helicase replicase [Paenibacillus polymyxa SC2]
 gi|309246391|gb|ADO55958.1| ATP-dependent DNA helicase replicase [Paenibacillus polymyxa SC2]
          Length = 784

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 23/172 (13%)

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
           ++ +  I H+ IDE QD S  Q    + L                + A+GD  Q+IY+ H
Sbjct: 539 FRSNSNIRHVFIDEAQDYSPFQLAFFKRLF-----------PQAKMTALGDFNQAIYA-H 586

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            +  +       +     T        I L  S+RST +I+      F+    A G    
Sbjct: 587 ASVLQDAEPLYDLYGADQTEM------ISLTRSYRSTQEIVE-----FTRGMVAGGEHIV 635

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                  +          +L + +            ES      +  + ++A
Sbjct: 636 PFNRKGEKPLVTEVNSREKLHQLIAGNVTKLLAEGYESIAVICKNADESAAA 687


>gi|238926788|ref|ZP_04658548.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas flueggei ATCC
            43531]
 gi|238885320|gb|EEQ48958.1| ATP-dependent deoxyribonuclease subunit B [Selenomonas flueggei ATCC
            43531]
          Length = 1198

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/538 (8%), Positives = 130/538 (24%), Gaps = 88/538 (16%)

Query: 454  FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
              +   R         +        S  +   K +++ +           ++     +  
Sbjct: 490  QWLDHLRRRIAEPLSLLTGHLRRHESTARVRTKALYDFLDELCVPQTLRLWSETADREGR 549

Query: 514  RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANH-NEV 572
                 +    ++        +  +    +   S ++    L      +  A      + V
Sbjct: 550  LADAAAH--RQIWSSCMALFDQLVEVRGDDPLSSRDYEELLSDGLDAMSIALIPPGLDHV 607

Query: 573  RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
             + +        +  VF++   + +             +     G  +    + S + + 
Sbjct: 608  TVASFDQNSIAGARAVFVIGANAGIMPRAGTTSGVFSDTELLFIGESLQTAGADSGHTVF 667

Query: 633  SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                   +          LY G T A D L +    ++ +            +     + 
Sbjct: 668  GG-----RTQQSFLERYQLYRGFTEARDYLWVSYALSSVDGSTLAPSPLIARLRRISSSF 722

Query: 693  ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPI----- 747
              +  + L    +     A   +  H      E++E  +       +   +         
Sbjct: 723  FSIP-LALAGRDDPLLLSAPYPAFSHLTAALREKKERGEMPAMWGDVYNWMLQDAVMQPL 781

Query: 748  ----------------------KNDINEPYILNPS--TIDTKGKTNLESLLSDNQTFN-- 781
                                           L+ S   ++T  +                
Sbjct: 782  LRRMLHGLFLPPREVSIPAPVAARLFTRDRRLSGSTTRLETFRQCPFRHFAMYGLRLQQR 841

Query: 782  ---------RGLIIHKLL----QVIFTLPEHKRKNFITSYCTKNAKLWPA---------- 818
                      G ++H +L    + + +   +     +     K  +L             
Sbjct: 842  DRYEFQSNDFGTLLHGILRGYGEWVRSAYGNDWCAALAEAPEKIEELLQELIPQVHSTVL 901

Query: 819  -------KEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIII------- 864
                      + +  +  + +++  +T+  +  S+               + +       
Sbjct: 902  MSRASYRHRIERIRCTAQQTIQH--LTSWAAASSFHPYGFEISFGRRNDGVRLADFPLAD 959

Query: 865  ------SGRIDQISISQQN--IFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDS 914
                   G+ID++ +   +    + +YKT        E I +    QL +Y  +++  
Sbjct: 960  GMTLSLRGQIDRLDVMDHHAYYLVLDYKTGATSLLLPE-IRHGLKMQLLLYLFVVRSI 1016


>gi|158341554|ref|YP_001522718.1| hypothetical protein AM1_H0054 [Acaryochloris marina MBIC11017]
 gi|158311795|gb|ABW33404.1| hypothetical protein AM1_H0054 [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 55/191 (28%), Gaps = 21/191 (10%)

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-FTLPEHKRKNFITSYCTKNAKLWP 817
           P +   + +  L S          G  +H  L  +            +  +         
Sbjct: 17  PKSYQFRYEHKLPSPTIFGS-TKLGNALHAALANVYKDWNYAYPLPSLDWFAVCWQHHTS 75

Query: 818 AKEYKNLLL--SITRLLENPMMTTAMSCDSYSEVSVS----GKINCPKKDIIISGRIDQI 871
                 +    +  +L     +           + +       +     +  +SGR D++
Sbjct: 76  ELTPTQIHEGWAALQLYYERYIAPL--PQIRKPLGIETKVRATLQVRNIEFTLSGRYDRL 133

Query: 872 SISQQNIFIFEYKTHH--HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE 929
                 + + +YKT    + P  ++        QL  Y  IL+  Y        LIY+  
Sbjct: 134 DYIDDGLELIDYKTSKSVNPPPSVD-------IQLGFYYLILEQIYKKALKRLSLIYLRS 186

Query: 930 PK--VFIIPQN 938
            +  ++ +  +
Sbjct: 187 NEKLIYEVTPD 197


>gi|228997814|ref|ZP_04157418.1| UvrD/REP helicase [Bacillus mycoides Rock3-17]
 gi|229005353|ref|ZP_04163067.1| UvrD/REP helicase [Bacillus mycoides Rock1-4]
 gi|228755883|gb|EEM05214.1| UvrD/REP helicase [Bacillus mycoides Rock1-4]
 gi|228761946|gb|EEM10888.1| UvrD/REP helicase [Bacillus mycoides Rock3-17]
          Length = 782

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 25/137 (18%)

Query: 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRV 237
            HI IDE QD S  Q+  ++ +                +  +GD  Q+IY          
Sbjct: 548 QHIFIDEAQDYSAFQYAFLKRIF-----------PHTKMTILGDFNQTIY---------E 587

Query: 238 LREKRINQKRATNAGQKF-SIIELPLSFRSTADILTVVDKVFS----IPENAQGLSEDST 292
              +    + +T  G++    I L  S+RST  I+    ++       P   +G     T
Sbjct: 588 HASENEFSQLSTLYGEELSEKIVLTRSYRSTKQIIEFTKQLIDGDEIEPFQREGKQPIIT 647

Query: 293 TTIRHRSSRIGQVGTVQ 309
                 +     V  ++
Sbjct: 648 EVKEGEAHHKKIVDQIE 664


>gi|229541968|ref|ZP_04431028.1| UvrD/REP helicase [Bacillus coagulans 36D1]
 gi|229326388|gb|EEN92063.1| UvrD/REP helicase [Bacillus coagulans 36D1]
          Length = 763

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 106/357 (29%), Gaps = 47/357 (13%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKE--------K 99
           K  + L+Q ++ +  +           T+ +        ++  K      E         
Sbjct: 389 KLLKELEQIAKEERKKPWVEEEMELLGTEAYLAAHQYAERKSRKNHDSFSESNYEKEFLA 448

Query: 100 LKKSQDEFIKIRDRFNT---YKMFKSTLASLTLAKYLNAHYEEAKK-------KNCVLDF 149
            K     F  IR +  T     +    L  L  A       EE          +   L +
Sbjct: 449 RKIVNRRFSSIRKQIKTFHYLHIRAQYLDFLRRAPEFVPGTEERLDVKTRAAFREGWLPY 508

Query: 150 EDLI--INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           ED +  +   DLL  +  S          I ++ IDE+QD S +Q   +R L        
Sbjct: 509 EDTVPFLYLFDLLTGKATS--------SSIKYVFIDEIQDYSPVQLAYLRYLF------- 553

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
                      +GD  QSI+   G    ++   K I         +K  ++ L  S+RST
Sbjct: 554 ----PYSKFTMLGDLNQSIFGTSGRS--QMELIKEIFG------EEKAQVVYLTKSYRST 601

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
           A I     ++ +  E  +    +    +   +    +     +        DS       
Sbjct: 602 AQITRFTKEILAGGEKIEWFEREGDLPVVTVARGKEEALAKVVRFAKKYAKDSNTVAIIG 661

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
                     +     +    I    S++     +  +   + ++   ++VL     
Sbjct: 662 KSRKQCAEAYETLREELDLTFIEKEYSDLPEGIILIPSYLAKGLEFDSVIVLDASAS 718


>gi|258424347|ref|ZP_05687227.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9635]
 gi|257845360|gb|EEV69394.1| ATP-dependent nuclease subunit B [Staphylococcus aureus A9635]
          Length = 1158

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 89/753 (11%), Positives = 185/753 (24%), Gaps = 176/753 (23%)

Query: 333  FDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFL 392
             +S       + +ARRI   I +             + ++ +DI +L R      L   +
Sbjct: 303  LESATMREEINEIARRIIVDIRD-------------KQLRYQDIAILYRDESYAYLFDSI 349

Query: 393  TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF------ 446
                   Y I    + +  +T H  ++ + +L   I S       + +LK+ +       
Sbjct: 350  L----PLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLK 405

Query: 447  --------------------NFSEDDIFKICTQRHET---ETVYEYIQKFANCGISKFQH 483
                                 + +D++F +            + E  +      +   + 
Sbjct: 406  SAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKD 465

Query: 484  VIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID-VLDEFLNFTLRNEQ- 541
            VI  I          +    F           +  ++   E  +  L+         +Q 
Sbjct: 466  VIDKILYFEKQMSQAATVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQI 525

Query: 542  ----------------NSYSSLQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLE 584
                            +   S+   +   +     ++        ++V I T+  AK   
Sbjct: 526  WNGLIQILDDLVLVFGDEPMSMDRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDN 585

Query: 585  SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               V+LV                I                 K      +  +       Q
Sbjct: 586  KQHVYLVGMNDGTMPQPVTASSLITDEE------------KKYFEQQANVELSPTSDILQ 633

Query: 645  EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
             +   + YV MTRA   +        S+        +   +   F+  E     +     
Sbjct: 634  MDEAFVCYVAMTRAKGNVTFSYSLMGSSGDDKEISPFLTQIQALFNRLEITNIPRYHEVA 693

Query: 705  NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
                    + +            +            + +      +    Y+++  T D 
Sbjct: 694  PLSLMQHVKQTKIALFEALRSWLDDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDN 753

Query: 765  KGKTNLESLLSDNQTFNR--------------------------------------GLII 786
            +     E+L  D                                            G I 
Sbjct: 754  ETVQLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIF 813

Query: 787  HKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSIT-RLLENPMMTTAMSCDS 845
            H +L+ I      +          K  +    +  + +L  +   LL +      +S   
Sbjct: 814  HSVLKYI----SERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRI 869

Query: 846  YSEVS-------------------VSGKI----------------NCPKKDIIISGRIDQ 870
             + V                                               I I G+ID+
Sbjct: 870  GAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDR 929

Query: 871  I--SISQQN--IFIFEYKTHHHVPQEIEHIPYTH---IAQLSIYEKIL----KDSYPNKS 919
            I          + I +YK+       I  +   +     Q+  Y  I+    +       
Sbjct: 930  IDTYTKNDTSFVNIIDYKSS--EGSAILDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDI 987

Query: 920  LV-CLLIY--VSEPKV-----FIIPQNKLNKAF 944
            +    L+Y  V EP++       I ++KL +  
Sbjct: 988  VKPGGLLYFHVHEPRIKFKSWADIDEDKLEQDL 1020


>gi|77920504|ref|YP_358319.1| hypothetical protein Pcar_2914 [Pelobacter carbinolicus DSM 2380]
 gi|77546587|gb|ABA90149.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
          Length = 658

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 38/199 (19%)

Query: 86  TQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC 145
           T+  +    DL+    ++      + DR    ++  S                    +  
Sbjct: 334 TKAQDDPFADLEAFYNRTDLLARHLSDRRQIERLAHSGAKLSG-------------AQTQ 380

Query: 146 VLDFED---LIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
            L F+D   L+     LL+ R     +  +     +HILIDE QD SLI          +
Sbjct: 381 ELSFDDSGILLH----LLQLRCQVEDVYQEAYGWYDHILIDEAQDLSLI----------E 426

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                   +  R+L    DEKQ I  F   + K +   +   + +  ++G+      L +
Sbjct: 427 LKALTLATTKHRSLTVCADEKQKILDFV--DSKGISAFQMDLKNQGLSSGE------LCV 478

Query: 263 SFRSTADILTVVDKVFSIP 281
           S+RSTA I+ +  +V   P
Sbjct: 479 SYRSTAQIMALASRVSGRP 497


>gi|296270957|ref|YP_003653589.1| hypothetical protein Tbis_2998 [Thermobispora bispora DSM 43833]
 gi|296093744|gb|ADG89696.1| hypothetical protein Tbis_2998 [Thermobispora bispora DSM 43833]
          Length = 306

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 16/163 (9%)

Query: 751 INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810
           ++       + +D            ++   +    +H  L   +  P  +R     +   
Sbjct: 25  LDCRRRYRFTYLDRPAPPKGPPWAHNSLGAS----VHNALAAWWRAPYERRTPATAAELV 80

Query: 811 KN----AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSE-VSVSGKINCPKKDIIIS 865
                      A++         R++         + D   E V V   +    + I +S
Sbjct: 81  AGVWITDGFRDAEQSAQWRERARRMVA----AYVSTLDPACEPVGVERVVATRTEVITVS 136

Query: 866 GRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYE 908
           GR+D+I      + + +YKT    P E +         L+IY 
Sbjct: 137 GRVDRIDHRDGELVVVDYKTGRRPPTEQDARSSLA---LAIYA 176


>gi|255973217|ref|ZP_05423803.1| predicted protein [Enterococcus faecalis T1]
 gi|255964235|gb|EET96711.1| predicted protein [Enterococcus faecalis T1]
          Length = 271

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 78/207 (37%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  +D +    G  +H   +    + E  +K   +   +        K
Sbjct: 38  EAAALAKLKGEWTPDNDPKALLVGNYVHSYFES-PEIHEAFKKENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +          +   EV V+G+I       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIYQGE--KEVIVTGEI----GGAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDIHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|53713423|ref|YP_099415.1| hypothetical protein BF2134 [Bacteroides fragilis YCH46]
 gi|52216288|dbj|BAD48881.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 957

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 67/500 (13%), Positives = 138/500 (27%), Gaps = 76/500 (15%)

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +          +  + +  YI EL+         +  +  +  +  R+     F      
Sbjct: 420 DKFLDILFTPRNGIRELCVYITELLKEVSVLYRQEQESDDIFNQLYRESLFKSFTL---- 475

Query: 528 VLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            ++  LN    NE Q    +L+ L++++                 ++IM V   + L+  
Sbjct: 476 -VNRLLNLIDNNELQVRIETLKRLLNKILNAANIPFH--GEPAIGMQIMGVLETRNLDFR 532

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            + L+            +   I  +L    G+     ++              +   + E
Sbjct: 533 NLLLLSLNEGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAE 586

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              L+Y                NTS++  +       M+         + +  L    + 
Sbjct: 587 NITLMY----------------NTSSDGLNRGEWSRFMLQFLIEWPHEISREYLEAGQSP 630

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                   +        L R     +          + SP   +      L         
Sbjct: 631 QNSKEIRITKTPEIIDRLYRTYDFSRNP-----NALILSPSALNTYLDCRLKFYFRYVAR 685

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKL------- 815
               + + ++  +   G I H+  Q+    +        K  +      N +L       
Sbjct: 686 LKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTANKRDIHKEDLERLLRDNIRLQNYVDIA 745

Query: 816 -------WPAKEYKNL--LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPKKDIIIS 865
                   P  E      +  I   +    +   +  D  Y+   + G      +DI I 
Sbjct: 746 FKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQLLRNDLQYAPFRMMGMEQEVVEDIRIE 805

Query: 866 -----------GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSI 906
                      G ID++   +  + I +YKT      P  IE +         +I Q  +
Sbjct: 806 GPVGKLSLKIGGTIDRMDSKEGTLRIVDYKTGGSPKVPANIEQLFTPAEGRPNYIFQTFL 865

Query: 907 YEKILKDSYPNKSLVCLLIY 926
           Y  I+      K +   L+Y
Sbjct: 866 YAAIMARQQALK-VAPSLLY 884


>gi|219883147|ref|YP_002478309.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
 gi|219867272|gb|ACL47610.1| UvrD/REP helicase [Cyanothece sp. PCC 7425]
          Length = 695

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 90/316 (28%), Gaps = 54/316 (17%)

Query: 52  TLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEF---- 107
            L  A+Q + + ++   L    L  +    +    ++I +      + L +         
Sbjct: 313 KLADANQLKILIQQAREL--AVLNLEGNLLQQHAQKQILENLTP--DYLLEEMGRVIEGR 368

Query: 108 -IKIRDRFNTYKMFKSTLAS--------LTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            ++  + +        T+A          TL         +  ++  +  +E L      
Sbjct: 369 GLESLEDYQATPRAGRTVALNKVQRQAIWTLRCSFY----QLLEQAGLETWEQLRSRAVK 424

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           LL+  +             + ++IDE QD        +  L            +P  LF 
Sbjct: 425 LLQNLETPIL--------FDAVVIDEAQDLDPNALRFLTLLCR----------APNRLFV 466

Query: 219 VGDEKQSIYS--FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             D  QSIYS  F   +    LR                    L  + R+T ++      
Sbjct: 467 TADANQSIYSSGFRWTDIHADLRF-------------NGRTGVLRTNHRTTREVNEAALH 513

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSL 336
             +     Q + +        + +           + +V          +    +    +
Sbjct: 514 YLADGSLDQEIPQHQYIHNGPQPAVRAISNRGDEADLLVRFCKVASREFRLGINACAILV 573

Query: 337 PQESSASILARRIAYT 352
           P E +   LA ++ Y 
Sbjct: 574 PSERAGRKLAEQLNYR 589


>gi|71910407|ref|YP_281957.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS5005]
 gi|71853189|gb|AAZ51212.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS5005]
          Length = 1071

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 74/653 (11%), Positives = 171/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLVDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLKKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVSTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                      +I++ 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIQVIDQEKNFQLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ I +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGIVDYKSSANQF-DIGTFYNGLSPQLMTYLAALKQIAPH 922


>gi|15674821|ref|NP_268995.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes M1 GAS]
 gi|81533820|sp|Q9A0H4|ADDB_STRP1 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|13621953|gb|AAK33716.1| putative ATP-dependent exonuclease, subunit B [Streptococcus
           pyogenes M1 GAS]
          Length = 1071

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 74/653 (11%), Positives = 171/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLVDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLKKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVSTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                      +I++ 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIQVIDQEKNFQLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ I +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGIVDYKSSANQF-DIGTFYNGLSPQLMTYLAALKQIAPH 922


>gi|108797788|ref|YP_637985.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119866880|ref|YP_936832.1| UvrD/REP helicase [Mycobacterium sp. KMS]
 gi|108768207|gb|ABG06929.1| UvrD/REP helicase [Mycobacterium sp. MCS]
 gi|119692969|gb|ABL90042.1| UvrD/REP helicase [Mycobacterium sp. KMS]
          Length = 703

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/388 (14%), Positives = 110/388 (28%), Gaps = 58/388 (14%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
                  V+     +S S+ +G    +  A     +       +R +     F  +   P
Sbjct: 281 LDDGRVLVTTFTSTLSESLRSG--LDMLIADKEVDSRIEVSHVDRLAH--RVFRHEHGAP 336

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK--------- 131
           +  + +++       L  +L  +        +        + + A   LA          
Sbjct: 337 R-MLGSEDERALWGGLATELGLAFTPVFLSEEWRQVVLARRISTADAYLAAKRTGRGRAL 395

Query: 132 ---------YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
                         +E+   K  V   E +      LL+                 HI+I
Sbjct: 396 GPAQRAQVWQAIWEFEQTLTKQEVWTHETIRREATRLLEGSAHKP---------FRHIVI 446

Query: 183 DEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKR 242
           DE QD S  QW ++R+   +          P  +F  GD  Q IY          +  + 
Sbjct: 447 DEAQDLSPDQWRLLRAAVAEA---------PDDIFIAGDTHQRIY-------DNRVSFRE 490

Query: 243 INQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
                            L +++R+TA+IL     +    E    +     +    +S   
Sbjct: 491 ------VGINIAGRSSRLNINYRTTAEILGWSLGLM-RGEPIDDMEGGLDSIAGCKSYVH 543

Query: 303 GQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI 362
           G      L     +  +++   +  +        P E   ++ A+  A  I + +    I
Sbjct: 544 GSPPM--LSGSGTADAEAEHIAKVVNAWIDRGVAPSEIGIAVRAKWFASKIEHALKAAGI 601

Query: 363 FSNGKKRVIQAKDILVLVRKRKDTPLIT 390
            +    R     D  V V        + 
Sbjct: 602 ATVDLARA-SEDDEAVHVGTMHRMKGLE 628



 Score = 40.3 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 26/109 (23%)

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             S +   V + T+H  KGLE   + +    ++     +                     
Sbjct: 608 RASEDDEAVHVGTMHRMKGLEFRCMCVAGVTAKWVPALNAVTPIDDD------------- 654

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                        K   +   E    LL+V  TRA ++L++  H   S 
Sbjct: 655 -------------KQTHQRDLERERCLLFVACTRAREELLVTWHGEPSP 690


>gi|317125689|ref|YP_004099801.1| hypothetical protein Intca_2568 [Intrasporangium calvum DSM 43043]
 gi|315589777|gb|ADU49074.1| hypothetical protein Intca_2568 [Intrasporangium calvum DSM 43043]
          Length = 308

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 65/215 (30%), Gaps = 29/215 (13%)

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQT-----------F 780
                 ++     +         Y  +PS +           +                 
Sbjct: 9   APATTPEVSSAHQAAFAGMPTPLYAASPSRLLAWLDCPRRYRMQYLDRPRPPARPQRAHT 68

Query: 781 NRGLIIHKLLQVIFTLPEHKR------KNFITSYCTKNAKLW--PAKEYKNLLLSITRLL 832
           + G+  H +L+  + LP  +R      +   +S+     +     A     +  ++   L
Sbjct: 69  SVGITTHNVLRDFWDLPPGRRTPDGVAELVRSSWIDVGFRDPEQSATWRGRVRETVVAYL 128

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE 892
                    S      V +   +      I ++GR+D++   +  + + +YKT   VP E
Sbjct: 129 RG-------SNRDQQPVGIERSVALRTASIAVTGRVDRLDDREGELVVVDYKTGRQVPTE 181

Query: 893 IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
            +         L++Y      ++    +   L +V
Sbjct: 182 DDARTS---LPLALYAVGAARTFRRSCVRVELHHV 213


>gi|312867329|ref|ZP_07727538.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis
           F0405]
 gi|311097030|gb|EFQ55265.1| ATP-dependent nuclease subunit B [Streptococcus parasanguinis
           F0405]
          Length = 1088

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 74/670 (11%), Positives = 177/670 (26%), Gaps = 97/670 (14%)

Query: 321 QCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLV 380
           Q   +          L Q ++       +A +I   +              + +DI VL+
Sbjct: 281 QVEDELGDQDRTAVQLWQTNTQKEELEFVAKSIRQRLHDG----------ARYRDIRVLL 330

Query: 381 RKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCM 440
               D        + + + Y+I         +  H  I+ + +LGR           + +
Sbjct: 331 ---GDVEAYQLQLKTIFDQYQIPFYLGRSEAMVHHPLIQVIESLGRIKQFNYQTEDVINL 387

Query: 441 LKSPLF-NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA---- 495
           LK+ L+ + +++++          E               + +  ++ ++ L        
Sbjct: 388 LKTGLYSDLTQEEVDAFEQYLRFAEIKGATKFHKPFTSNRQGKFNLEKLNTLRERVVEPL 447

Query: 496 ------------QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD----EFLNFTLR- 538
                          +    F   +   +  Q  I     E  +  D     FL+     
Sbjct: 448 APFFSQRKQKVTHLLTAFTEFLQEVQLSQNLQALIKDLALEEQERYDQVWKAFLHVLEEL 507

Query: 539 ---NEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
               E    +    L   L     +  R   A  + V + +    + L +P V+ +    
Sbjct: 508 NVVFEDQELTVDDFLALLLSGMQLSQYRTVPATVDVVTVQSYDLIEPLTAPYVYAIGLTQ 567

Query: 596 QVFSHKHIKKMHIMPSL---------NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           + F         +                    +     K    +   L+          
Sbjct: 568 ERFPKIAQNTSLLSEEERQQLNEATQEGAELQVVSSENLKKNRFVAVSLLNAATNQLVLS 627

Query: 647 YNRLLYVGMTRASDQLI--------ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
              L+       S  L+        I      +     +  T+  ++       +     
Sbjct: 628 APSLVNEMEDSVSPYLVELTKEPIAIEWTIKQAQASSDDIGTYRALLARVIELHQEEIAS 687

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILN 758
           +L+        +A            ++  +   +L   Q     L +           L+
Sbjct: 688 ELSAEEASFWSVAVRVLRKKLAAEGIQIPQISTELKSRQLQSDTLQALYPEGKAL--TLS 745

Query: 759 PSTIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVI----FTLPEHKRKN 803
            S ++   K              E         + G  +H++ + +          +R N
Sbjct: 746 ASALNEYYKHQYAFYLRYVLGLQEDETIRPDARSHGNFLHRIFERVLKDSSDQAFDQRLN 805

Query: 804 FITS---YCTKNAKLWPAKEYKNLLLSIT--------RLLENPMM------TTAMSCDSY 846
                     +  +L+        + S+         R+L            T     ++
Sbjct: 806 EAIRETSQEAEFQQLYTESGETEFIRSLLLDTAKTTGRVLAQQNGIETIGEETLFGGSAH 865

Query: 847 SEVSVSGKINCPKKDIIISGRIDQI--SISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQL 904
           +   +S       + + + G++D+I     +  + + +YK+        +       +QL
Sbjct: 866 TSYPLS-----DGRLLQLRGKVDRIDQLRDRGALGVVDYKSS-LTQFHYDKFFNGLNSQL 919

Query: 905 SIYEKILKDS 914
             Y   ++D 
Sbjct: 920 PTYLSAIQDL 929


>gi|307704789|ref|ZP_07641685.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK597]
 gi|307621698|gb|EFO00739.1| ATP-dependent nuclease subunit B [Streptococcus mitis SK597]
          Length = 1094

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/714 (9%), Positives = 173/714 (24%), Gaps = 89/714 (12%)

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
           P     L + S   + H +++                   + +   E+   + +      
Sbjct: 230 PFAEGNLYQASVEFLHHLAAKYQTPAQDYSQSHEKMDSFDKASRLLEASYDFSELTLDVD 289

Query: 341 SASILARRI-----AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                  +I           ++         +   +  K   +L+    D        + 
Sbjct: 290 DEDRENLQIWSCLTQKEELELVARSIRQKLHENSNLSYKHFRILL---GDVASYRLSLKT 346

Query: 396 LKNDYKISVVGNDRFILTDHL----------------AIKDLMALGRFILSQEDDLSFVC 439
           + + Y+I         +  H                   +DL+ L R  L  +   + + 
Sbjct: 347 IFDQYQIPFYLGKSESMAHHPLTQFVESVLALKRYRFRQEDLINLLRTGLYSDLSQADID 406

Query: 440 MLKSPLFNFS-------EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
             +  +           +    K    +   E +     +      + F    +    L+
Sbjct: 407 AFEQYIRYLGINGLPAFQQTFTKSHHGKFNLERLNALRLRILTPLETLFASRKQKAENLL 466

Query: 493 HIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                F         +       +        EV       L         S  SL++ +
Sbjct: 467 QKWNSFLKEGAVTKQLQDLTATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFL 526

Query: 552 SELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + L      +  R   A  + V + +      L +  V+ +                +  
Sbjct: 527 ALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTD 586

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD---------- 660
               +              +  +         +     R   V    +            
Sbjct: 587 EEKQNLNQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESESKESAY 646

Query: 661 --QLIICKHSNTSNE------KKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
             +L+    S            K +  T++ ++       ++ +  + ++      ++  
Sbjct: 647 LQELVHFGFSRKEKRMNHKGLSKEDIGTYHSLLSSLVAYHQQSETDETSDREQDLTFVKV 706

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN--- 769
                  +      +          K   K         ++ + L+ S +    +     
Sbjct: 707 LARVMGKKLDQQGLKNPALPTSPSSKQLTKDTLQALYPTDQEFYLSTSGLTEFYRNQYSY 766

Query: 770 --------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEY 821
                    E L       + G  +H++ +    LP+    +          +    +E+
Sbjct: 767 FLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPDEDSFD--HRLEQAIQETSQEREF 824

Query: 822 KNLLLSITR-----------------LLEN-PMMTTAMSCD--SYSEVSVSGKINCPKKD 861
           + +                       +L + P + T          E +         + 
Sbjct: 825 EAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEANFGGKEQAFIQL--DNGRS 882

Query: 862 IIISGRIDQISI--SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           + + G++D+I    +   I + +YK+     Q   H      +QL  Y   LK 
Sbjct: 883 VFVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFP-HFFNGLNSQLPTYLAALKR 935


>gi|67459016|ref|YP_246640.1| hypothetical protein RF_0624 [Rickettsia felis URRWXCal2]
 gi|75536548|sp|Q4ULU8|Y624_RICFE RecName: Full=Uncharacterized protein RF_0624
 gi|67004549|gb|AAY61475.1| unknown [Rickettsia felis URRWXCal2]
          Length = 856

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/436 (11%), Positives = 122/436 (27%), Gaps = 50/436 (11%)

Query: 486 KYIHELIHIAQFCSPHDFFTLI-LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ-NS 543
           +Y   LI I    +PH+   ++ L  +   +   + +  E    L EFL       +  +
Sbjct: 337 EYCRNLIDILFTDNPHNILDILTLTKEIAEKLLPTIWEKEGGAELVEFLTNLTAYSKYIN 396

Query: 544 YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHI 603
               ++           IK   + +   + I            ++ L    ++ ++    
Sbjct: 397 SMDKKDFPKIFSFLLSNIKYYKNTDSANIIIAPPEDLALCTFDLIILPHFNNENWTPTAK 456

Query: 604 KKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLI 663
               +         I      S   ++  +  +++                      Q+I
Sbjct: 457 SHPWLSKKALQILNIDYNETASTLYSDYFNLFLQN---------------------KQVI 495

Query: 664 ICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
           I        +       +  +          +      +          +       +  
Sbjct: 496 ILNAKKYDGKLSVPSNLFLKLQDVIPAVHYVIPAEAGIHLDMDSRRCWNDIRKDDIGDES 555

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
                +   ++    I   + +P      +   L              ++  + +  + G
Sbjct: 556 TAHSHSFPSVLSVTDIETLIRNPYGFYAKKILGLRKKD----------NIWEEPKISDFG 605

Query: 784 LIIHKLLQVIF--------TLPEHKRKNFITSYCTK--NAKLWPAKEYKNLLLSITRLLE 833
             IHK+L+            L    ++N + +         + P    K   + +T   +
Sbjct: 606 NFIHKVLEEYSKNYDKQFINLNLLDKQNALINIGNHILYGTILPNYTKKTWQIKLTAFSK 665

Query: 834 NPMMTTAMSCDSYSEVSV----SGKINCPKKDIIISGRIDQISISQ-QNIFIFEYKTHHH 888
             ++       +  E+        ++N   +DI I G  D+I IS+  +I I +YKT   
Sbjct: 666 AFILFDIERRKNCKEIYFETKGELRLNIAGQDIKIIGIADRIEISKSNHITILDYKTGTI 725

Query: 889 VPQEIEHIPYTHIAQL 904
                + I      QL
Sbjct: 726 P--TKKEIELGLSPQL 739


>gi|47218243|emb|CAF96280.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 866

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 26/99 (26%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           ++  + + ILIDE QD +    +V+              S       VGD  Q IY+F G
Sbjct: 539 RLSDKYDVILIDEAQDCTPAVIDVL-------------LSQHCGKILVGDPHQQIYTFRG 585

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
           A                 N  +   I  L  SFR  A+I
Sbjct: 586 AVNAL-------------NTVEHTHIYYLTQSFRFGAEI 611


>gi|312869658|ref|ZP_07729806.1| putative helicase IV [Lactobacillus oris PB013-T2-3]
 gi|311094792|gb|EFQ53088.1| putative helicase IV [Lactobacillus oris PB013-T2-3]
          Length = 766

 Score = 59.2 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 60/223 (26%), Gaps = 18/223 (8%)

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            ++I ++ +DEVQD    Q   ++                     +GD  Q+I++     
Sbjct: 526 QRDIRYVFVDEVQDYDPYQLAYLK-----------FRFPRAKFTLLGDLNQAIFT----- 569

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            +      R          +K  +++L  S+RST  I      +    E  +    D   
Sbjct: 570 HENSKSLLRQLSTMFD--PEKTKVVQLTKSYRSTKQITDFTKHILLDGEAIEAFDRDGDL 627

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                S          +      Q +              + L +      +   +  T 
Sbjct: 628 PQVIESGTFDGSVDTLVATLQKYQQEHDQVAIIGKTLEDSEQLFKALEQRGVKTTLIRTE 687

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFL 396
           +  +   TI            D +++              + L
Sbjct: 688 NQRLVKGTIIVPSFLAKGLEFDAVIVWNANNQQYHGDDERQLL 730


>gi|239981937|ref|ZP_04704461.1| ATP-dependent helicase [Streptomyces albus J1074]
 gi|291453791|ref|ZP_06593181.1| helicase [Streptomyces albus J1074]
 gi|291356740|gb|EFE83642.1| helicase [Streptomyces albus J1074]
          Length = 795

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 108/360 (30%), Gaps = 55/360 (15%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLL--SSFFLT 75
             LW          +  ++  + +G    +    +          +  +  L   +    
Sbjct: 414 DALWARSGASGRHQDPELAAELRSGFDEDILSEDSFTAFL-----DAWWPELTPRAVLAA 468

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
                +    ++++  +                +   R         ++  + L   L A
Sbjct: 469 MADEKRLARWSRKVLNQG---------EVRRVARSLARLGPMGEGPLSVHDVALLDELEA 519

Query: 136 HYE-----EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRY----KIDQEINHILIDEVQ 186
                     K++   LD    +    +L+  R+ + W R     +   E  H+++DE Q
Sbjct: 520 VLGAPPRPRRKREADPLDH---LTGLQELMPVREETQWERAERLAQERTEYTHVIVDEAQ 576

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQK 246
           D + +QW ++                  T   VGD  QS      ++P      +     
Sbjct: 577 DLTPMQWRMV-----------GRRGRQATWTVVGDPAQS----SWSDPDEAAEARDE--- 618

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVG 306
                 +      L +++R+ A+I  +  +V +       L+   + + R   S   +  
Sbjct: 619 --ALGRRPRRRFTLTVNYRNPAEIAELASRVLA-------LAMPGSDSPRAVRSTGVEPR 669

Query: 307 TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366
            V   E++     ++     E+       +         AR +A     ++   ++ + G
Sbjct: 670 FVVAGERMGETVRAEAARLLETVDGTIGVVVPMERREQAARWVAGLGERVVALGSLEAKG 729


>gi|78065533|ref|YP_368302.1| superfamily I DNA/RNA helicase-like protein [Burkholderia sp. 383]
 gi|77966278|gb|ABB07658.1| Superfamily I DNA and RNA helicases-like protein [Burkholderia sp.
           383]
          Length = 1107

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 21/111 (18%)

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
              +  E +H+L+DEVQD   ++  ++R LT +             LF  GD  Q++++ 
Sbjct: 553 LEALQPEFDHVLVDEVQDLGTLELRIVRRLTRE---------GENDLFLCGDAAQTVHT- 602

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
                      K ++ K A         I L  ++R++  ILT   +V + 
Sbjct: 603 -----------KYLHMKDAGVDLPSQRWIRLNQNYRNSRQILTAAYEVLTR 642


>gi|56808114|ref|ZP_00365903.1| COG3857: ATP-dependent nuclease, subunit B [Streptococcus pyogenes
           M49 591]
          Length = 1071

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 75/653 (11%), Positives = 171/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLVDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLKKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILISFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVPTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELINFGLPLLDKGKNYLSYDNSDIANYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                      +I+I 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIQVIDQEKNFQLDMGNEILIH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ I +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGIVDYKSSANQF-DIGTFYNGLSPQLVTYLAALKQIAPH 922


>gi|254557327|ref|YP_003063744.1| ATP-dependent nuclease, subunit B [Lactobacillus plantarum JDM1]
 gi|254046254|gb|ACT63047.1| ATP-dependent nuclease, subunit B [Lactobacillus plantarum JDM1]
          Length = 1201

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/749 (9%), Positives = 175/749 (23%), Gaps = 158/749 (21%)

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G V L +    Q  +    ++    +    L +  S      ++   I  M+      
Sbjct: 287  APGLVALDDFWRGQPQAATGHEE---PNTNVHLFRTDSRQTELAQVGRMIRAMVAKKHAN 343

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      +D L++ R          +     ++ +I    + +  + DH  ++ + A
Sbjct: 344  PADDYH---YRDFLIMTR---HLDAYQTMLAPTFHELEIPYFVDLQRSMADHPLVELINA 397

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            L      Q      + +LK+ L   + +          +   + E     +     ++  
Sbjct: 398  LFDIDAQQYQYRDVMRVLKTELLMPNINGQPMDRQAYRQAVDLTENFILKSGYHGQRWVQ 457

Query: 484  VIKY--------------------------------------IHELIHIAQFCSPHDFFT 505
               +                                        ++       +      
Sbjct: 458  REDWQYFQLTEGDAGVETDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLV 517

Query: 506  LILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
              L ++    Q ++               E       F            +   E+   L
Sbjct: 518  NFLTSQGVTDQLLAWRDQALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFL 577

Query: 555  EQYPP----TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                            +  ++V I      +  +  VVF+V     V   + +    +  
Sbjct: 578  ALLQAGFEGASYSQIPSTLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSD 637

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
               ++    +         N  + +          + + L Y+    A   L        
Sbjct: 638  VDKENLQPTLSSLDGDHYLNDSAVV-------QLGDESCLNYLAFLSARRHLFFSAPLKD 690

Query: 671  SNEKKSNQRTWYDMVYDSF--------HNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
              E   N   +   +   F           +            K   I++    +    T
Sbjct: 691  DQETDLNWSNYVRRIQRQFNLREHTYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLT 750

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDI----------------NEPYILNPSTIDTKG 766
                   +   +    +   L   +  D                 N+P  L P++++   
Sbjct: 751  TNTDRNRVGAPLQPAPVWVWLRQQLTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALY 810

Query: 767  KTN--------------------------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                                          E  + +    + G   H +L  +       
Sbjct: 811  GHQIYTSISKLEEFYRNQYAYFLKYGLKLRERDVFELSAASTGEFFHAVLDGLIKALRSD 870

Query: 801  RKNFITSYCTKNAKLWPAKEY---------------------KNLLLSITRLLENPMMTT 839
            +     +   +  +                            + L+ ++ ++       +
Sbjct: 871  QIPLAQASDQQLGQYLETVTRQILDQPQFTILTSSNRMAYLQRQLINTVRQIAFAIRNQS 930

Query: 840  AMSCDS--YSEVSV-----SGKINCPK------KDIIISGRIDQIS---ISQQNIF-IFE 882
             +S      +EV          +            + + G+ID++    ++ Q+   I +
Sbjct: 931  KLSAAEPKQTEVLFGNVGKEHGLKALDFQIDATHSVHVRGKIDRLDQIQVADQSYLGIVD 990

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            YK+  H     E        Q+  Y   +
Sbjct: 991  YKSSQHKFDFQEAYY-GLAMQMLTYLDAV 1018


>gi|29654532|ref|NP_820224.1| ATP-dependent nuclease subunit B [Coxiella burnetii RSA 493]
 gi|29541799|gb|AAO90738.1| ATP-dependent nuclease subunit B [Coxiella burnetii RSA 493]
          Length = 862

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 118/410 (28%), Gaps = 66/410 (16%)

Query: 525 VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
             + L           +Q +  +  +L+ +L  +     +  S+ ++ ++I+ +    G 
Sbjct: 410 RWENLLHEYAALDTFTQQQTRKNALQLLRQLAHHTL--FQPMSSQNSSIQILGLLETTGH 467

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
               +++     + +         +          P+ + +     +  +   K   + T
Sbjct: 468 YFDKLWIAGLNDKKWPRVASPNPFL----------PLSLQRRCQMPHASA---KREMEYT 514

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +  NRLL     +++  +I+       + + S           +  + +      L   
Sbjct: 515 LQLQNRLL-----KSAPAIILSAPLQEGDIQLSTSPLIRHFPEINNEDLQLTAWQPLKAH 569

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
           + K + +        P     E       L+  Q I                        
Sbjct: 570 LFKIKMLETIEDAQAPALQENEPMSGGSGLLQSQSIC---------------PFQAFAKV 614

Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLL----------QVIFTLPEHKRKNFITS---YCT 810
                 L    +      RG  +H+ L          Q + +  + + +N I     +  
Sbjct: 615 RLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNSSSDGELENIIDETITHLI 674

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN---CPKKDIIISGR 867
              KL            + +L++N      +         VS +          + +  R
Sbjct: 675 SQEKLIQPLFLNTEKKRLKQLIKN----WLLLEKKRPPFEVSQRETKRHIKIGPLRLEVR 730

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEI---EHIPYTHIAQLSIY-EKILKD 913
           ID+I     N FI +YKT      +    + +      QL +Y     ++
Sbjct: 731 IDRI---DNNCFIIDYKTGGQNSVDDWFGDRLKS---IQLPLYCAYAARE 774


>gi|229097025|ref|ZP_04227993.1| DNA helicase [Bacillus cereus Rock3-29]
 gi|228686421|gb|EEL40331.1| DNA helicase [Bacillus cereus Rock3-29]
          Length = 537

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 64/177 (36%), Gaps = 42/177 (23%)

Query: 132 YLNAHY--EEAKKKNCVLDFED--LIIN--TNDLLKKRDVSAWIRYKIDQEINHILIDEV 185
            L  +Y  E+ K     +D ED  L++    + LL +             + +HI IDEV
Sbjct: 213 RLFEYYVEEQKKDFVNRIDKEDYALLVMNHLHQLLDEN------------KYDHIFIDEV 260

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD   +Q  V+ ++            +  TL   GDE+Q IY    + P           
Sbjct: 261 QDLQPMQLRVLVAI------------NKGTLSLSGDERQRIYK---SSPFSY-------- 297

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRI 302
           K      Q  + + L  ++RST  I+ + +       +A+    D          + 
Sbjct: 298 KALGIKVQSGNNVVLRKNWRSTYQIMKLANS-IQFKRSAEDSKYDDEKYFPREGDKP 353


>gi|291485840|dbj|BAI86915.1| hypothetical protein BSNT_04990 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 774

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 77/264 (29%), Gaps = 50/264 (18%)

Query: 52  TLQQASQTQCI----EERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKS---Q 104
            L++  + +       E         + +K   +K       N    +  ++L  +   +
Sbjct: 405 KLEKKERRKDWVVHEAELLDKEDYLDVCKKLQERKRFSESTFNDYQRE--QQLLAAIIVK 462

Query: 105 DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKR- 163
             F  ++           T   L L       ++  K          +   T        
Sbjct: 463 KAFKPLKQAVRLLAFLDVTQLYLQLFSGWGGKFQHEKMAA-------IGELTRSAFTDNK 515

Query: 164 ---DVSAWIRY--------KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
              + +A   Y        K + +I H+ IDE QD S  Q   +RS+             
Sbjct: 516 LLYEDAAPFLYMQDLIEGRKKNTKIKHLFIDEAQDYSPFQMAYMRSIF-----------P 564

Query: 213 PRTLFAVGDEKQSIYS-FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADIL 271
             ++  +GD  QSIY+     + +     +                + L  ++RST  I+
Sbjct: 565 AASMTVLGDINQSIYAHTIHGDQRMDACFEDD----------PAEYVRLKRTYRSTRQIV 614

Query: 272 TVVDKVFSIPENAQGLSEDSTTTI 295
                +     + +  +      +
Sbjct: 615 EFTKAMLQDGADIEPFNRSGEMPL 638


>gi|255535481|ref|YP_003095852.1| hypothetical protein FIC_01342 [Flavobacteriaceae bacterium
           3519-10]
 gi|255341677|gb|ACU07790.1| hypothetical protein FIC_01342 [Flavobacteriaceae bacterium
           3519-10]
          Length = 911

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/498 (10%), Positives = 134/498 (26%), Gaps = 94/498 (18%)

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI-----SRFGNEVIDVLDEF-------L 533
           K ++E +    + +     + +         +          +   + +  F        
Sbjct: 393 KQLNEYLADLSYLNLFQKASSVSAYLDLLIAYCYELKFGDLDDIAYENISHFEKSFRIIK 452

Query: 534 NFTLRNEQNSYSSLQELISEL-EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD 592
           N       +   S++ L   + +                +++M +   + L    + L+ 
Sbjct: 453 NQISPY--SFPVSMETLEVLINQLVNSETIDFQGEPLEGLQVMGLLETRLLNFENIILLS 510

Query: 593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLY 652
                    + +  ++      D      +      ++I +     L +           
Sbjct: 511 ANEGKLPLGNTQNTYLP----FDIRRHFNLHTFLENDSIYAYHYYRLIQE---------- 556

Query: 653 VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAY 712
              ++    L    +S  +  +KS   T  ++          + +      + K   IA 
Sbjct: 557 ---SQNVHLLFNALNSGVNTGEKSRFITQMEIEDRHHQITNVIIENAADPILQKPMHIAK 613

Query: 713 EWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLES 772
                      +E  E  K  +    +   +++P    +N                  + 
Sbjct: 614 -------TPKVIEILEAWKARISASHLTSYIYNPADFYLN----------KILNTREADE 656

Query: 773 LLSDNQTFNRGLIIHKLLQVI-------------FTLPEHKRKNFITSYCTKNAKLWPAK 819
           +  +    + G ++H  LQ I               L +      +     K        
Sbjct: 657 MEEELSQRSYGNLVHYALQDIYEKFVGKTLTVKDLDLTDQNIVEALDHAIEKLNHQIEFY 716

Query: 820 E------YKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPK--------KDIIIS 865
           +      +K++   + R +           ++   + V GK +  +          +   
Sbjct: 717 QNGMNFIHKSIAERVVRGVVEYDRKLVAGGNTLEIIGVEGKFDQAEYFLDEEKKDRVGFY 776

Query: 866 GRIDQISISQQNIFIFEYKT--------HHHVPQEIEH------IPYTHI--AQLSIYEK 909
           G ID+I      + I ++KT              E E           +    QLSIY  
Sbjct: 777 GFIDRIDRLNGTVRIIDFKTAKTKNLSISAPKKAEDEEKLQRLFFREDYKQALQLSIYAY 836

Query: 910 IL--KDSYPNKSLVCLLI 925
            +   +  P++S+ C + 
Sbjct: 837 SVLKTNVLPDRSVQCGIW 854


>gi|325105547|ref|YP_004275201.1| ATP-dependent nuclease subunit B [Pedobacter saltans DSM 12145]
 gi|324974395|gb|ADY53379.1| ATP-dependent nuclease subunit B [Pedobacter saltans DSM 12145]
          Length = 986

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 63/485 (12%), Positives = 135/485 (27%), Gaps = 73/485 (15%)

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
             L  PL   SE    KI      TE + +  Q         F    + I + + I +  
Sbjct: 408 AFLSHPLVGLSEKMREKILKAF-VTEQIVQVPQSRLLPQKGIFVDFFQKIDKPVEIVKGL 466

Query: 499 SPHDFFTLILGAKKGRQQFIS---RFGNEVIDVLDEFLNFTLRNEQNSYSSLQ-ELISEL 554
              +    +L  +   +           + I  L+   +   ++       L+   +  L
Sbjct: 467 K--ETLEAVLKRQLYGKHLKKIDSELFIKTIQELNRLYDTLFKHVNEGKQILEVGFVISL 524

Query: 555 EQYPPTIKRAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
            Q          +    N +++M +  ++ L    V L+     +     I    I  SL
Sbjct: 525 IQKTLQSIAVPLSGSPLNGLQVMGLLESRNLNFKHVVLLGLNDGIVPKTTIGNSFIPDSL 584

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
               G+P+        N          +   + E   ++Y  +T                
Sbjct: 585 RRVYGLPV------LENQDAISAYMFYRLIQRAEKVSVVYNSLT--------------DE 624

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQ 732
                   +   +      D      ++   + K             E T +E+ + I +
Sbjct: 625 SNSGEPSRFLKQLEYESGWDFNYFHQEMNVEVEKS------------EATEIEKTDEIIK 672

Query: 733 LMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV 792
           ++++    ++  S           ++       G    E +    +  + G I+H  ++ 
Sbjct: 673 VLNDFSTGRRTLSASALTTYIANPIDFFFNYIAGIKEPEEVHEVVEANDLGSILHGTMED 732

Query: 793 I-----FTLPEHKRKNFITSY--------CTKNAKLWPAKEYK-----------NLLLSI 828
                 F  P   R+                 N  ++   E +            ++   
Sbjct: 733 FYNILKFENPNITRERIAEKRKDILTLIKANFNKVMYDNAERQTNFSGMQLVVLAIVEEY 792

Query: 829 TRLL--ENPMMTTAMSCDSYSEVSVS-GKINCPKKDII---ISGRIDQISISQQNIF-IF 881
             ++   +   T   +     E  V          +     I G ID++ ++   I  I 
Sbjct: 793 CNIILNYDEKCTP-FTIIHMEEAMVVPYTFTDANGNERTIHIKGIIDRVDLTGDGITRIV 851

Query: 882 EYKTH 886
           +YKT 
Sbjct: 852 DYKTG 856


>gi|296270990|ref|YP_003653622.1| UvrD/REP family ATP-dependent DNA helicase [Thermobispora bispora
           DSM 43833]
 gi|296093777|gb|ADG89729.1| ATP-dependent DNA helicase, UvrD/REP family [Thermobispora bispora
           DSM 43833]
          Length = 687

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 27/187 (14%)

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
            +   HI++DE QD    QW ++R+             +P  LF VGD  Q ++    A 
Sbjct: 447 RRPYRHIVVDEAQDLHPAQWRLLRA---------AVPEAPNDLFIVGDPHQRMFDTRIA- 496

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                          T+ G       L LS+R + ++L+   ++      A GL      
Sbjct: 497 --------------LTDIGIPVRRFRLKLSYRLSHEVLSWSARL--RGGLADGLVPSHAD 540

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
               R+ R G    +           +        W        + +  +   + +A   
Sbjct: 541 LGGFRALRHG-PRPIVRGYVSPEAEIAGLVSLVAEWIDEGVPEDEIAVTARTPQLVATAR 599

Query: 354 SNMIGTD 360
           S +    
Sbjct: 600 SALREAG 606


>gi|212218646|ref|YP_002305433.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuK_Q154]
 gi|212012908|gb|ACJ20288.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuK_Q154]
          Length = 872

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 118/410 (28%), Gaps = 66/410 (16%)

Query: 525 VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
             + L           +Q +  +  +L+ +L  +     +  S+ ++ ++I+ +    G 
Sbjct: 420 RWENLLHEYAALDTFTQQQTRKNALQLLRQLAHHTL--FQPMSSQNSSIQILGLLETTGH 477

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
               +++     + +         +          P+ + +     +  +   K   + T
Sbjct: 478 YFDKLWIAGLNDKKWPPVASPNPFL----------PLSLQRRCQMPHASA---KREMEYT 524

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +  NRLL     +++  +I+       + + S           +  + +      L   
Sbjct: 525 LQLQNRLL-----KSAPAIILSTPLQEGDIQLSTSPLIRHFPEINNEDLQLPAWQPLKAH 579

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
           + K + +        P     E       L+  Q I                        
Sbjct: 580 LFKIKMLETIEDAQAPALQENEPMSGGSGLLQSQSIC---------------PFQAFAKV 624

Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLL----------QVIFTLPEHKRKNFITS---YCT 810
                 L    +      RG  +H+ L          Q + +  + + +N I     +  
Sbjct: 625 RLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNSSSDGELENIIDETITHLI 684

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN---CPKKDIIISGR 867
              KL            + +L++N      +         VS +          + +  R
Sbjct: 685 SQEKLIQPLFLNTEKKRLKQLIKN----WLLLEKKRPPFEVSQRETKRHIKIGPLRLEVR 740

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEI---EHIPYTHIAQLSIY-EKILKD 913
           ID+I     N FI +YKT      +    + +      QL +Y     ++
Sbjct: 741 IDRI---DNNCFIIDYKTGGQNSVDDWFGDRLKS---IQLPLYCAYAARE 784


>gi|212212386|ref|YP_002303322.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuG_Q212]
 gi|212010796|gb|ACJ18177.1| ATP-dependent nuclease subunit B [Coxiella burnetii CbuG_Q212]
          Length = 862

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 118/410 (28%), Gaps = 66/410 (16%)

Query: 525 VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
             + L           +Q +  +  +L+ +L  +     +  S+ ++ ++I+ +    G 
Sbjct: 410 RWENLLHEYAALDTFTQQQTRKNALQLLRQLAHHTL--FQPMSSQNSSIQILGLLETTGH 467

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
               +++     + +         +          P+ + +     +  +   K   + T
Sbjct: 468 YFDKLWIAGLNDKKWPPVASPNPFL----------PLSLQRRCQMPHASA---KREMEYT 514

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +  NRLL     +++  +I+       + + S           +  + +      L   
Sbjct: 515 LQLQNRLL-----KSAPAIILSAPLQEGDIQLSTSPLIRHFPEINNEDLQLPVWQPLKAH 569

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
           + K + +        P     E       L+  Q I                        
Sbjct: 570 LFKIKMLETIEDAQAPALQENEPMSGGSGLLQSQSIC---------------PFQAFAKV 614

Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLL----------QVIFTLPEHKRKNFITS---YCT 810
                 L    +      RG  +H+ L          Q + +  + + +N I     +  
Sbjct: 615 RLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNSSSDGELENIIDETITHLI 674

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN---CPKKDIIISGR 867
              KL            + +L++N      +         VS +          + +  R
Sbjct: 675 SQEKLIQPLFLNTEKKRLKQLIKN----WLLLEKKRPPFEVSQRETKRHIKIGPLRLEVR 730

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEI---EHIPYTHIAQLSIY-EKILKD 913
           ID+I     N FI +YKT      +    + +      QL +Y     ++
Sbjct: 731 IDRI---DNNCFIIDYKTGGQNSVDDWFGDRLKS---IQLPLYCAYAARE 774


>gi|184156127|ref|YP_001844467.1| DNA helicase [Lactobacillus fermentum IFO 3956]
 gi|183227471|dbj|BAG27987.1| DNA helicase [Lactobacillus fermentum IFO 3956]
          Length = 764

 Score = 59.2 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 68/243 (27%), Gaps = 27/243 (11%)

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           +   DLL           +  +EI  + +DEVQD    Q   +R                
Sbjct: 514 LYLYDLLTG--------KRGQREIRFVFVDEVQDYDAFQLAYLRFCF-----------PK 554

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
                +GD  Q+I++ + A    + +   + +       +K  +I+L  S+RST  I   
Sbjct: 555 ARFTLLGDLNQAIFTHNNAR-SLLQQLGTMFE------PEKTKVIQLTRSYRSTKQITNF 607

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
              +    E  +    +                   +      Q D           +  
Sbjct: 608 TKAILKDGEAIEAFEREGELPRVLTVPSEEDAVNQVVATLAKYQADHDTTAIITKTLTDA 667

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
           + +      +  A  +  T +  +   TI            D  V+V             
Sbjct: 668 EKITALLKEAGQAVTLIQTENQRLAQGTIVVPSYLAKGLEFD-AVIVWDANQAKYQGDAE 726

Query: 394 RFL 396
           R L
Sbjct: 727 RQL 729


>gi|167824491|ref|ZP_02455962.1| DNA helicase II [Burkholderia pseudomallei 9]
          Length = 257

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 59/200 (29%), Gaps = 37/200 (18%)

Query: 541 QNSYSSLQELISELEQYPPTI-KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
             +  ++  L   L             A  + V++MTVH AKGLE   VF+      +F 
Sbjct: 26  AQNPDAMTPLAGFLSHASLEAGDNQAQAGQDAVQLMTVHAAKGLEFTAVFITGLEEGLFP 85

Query: 600 HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
           H++                                    L+    EE  RL+YV +TRA 
Sbjct: 86  HENS----------------------------------ALESDGLEEERRLMYVAITRAK 111

Query: 660 DQLIICKHSNTS--NEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTH 717
           ++L +    +     + + N R+ +              K++           A      
Sbjct: 112 ERLYLSFAQSRMLHGQTRYNIRSRFFDELPQHVLKWLTPKVEAGARWGGRSDNAGWGRDW 171

Query: 718 HPENTPLEREETIKQLMDEQ 737
                   R+  +   +   
Sbjct: 172 FARPGGGARQGVVDAAVSAP 191


>gi|225388060|ref|ZP_03757784.1| hypothetical protein CLOSTASPAR_01794 [Clostridium asparagiforme
           DSM 15981]
 gi|225045883|gb|EEG56129.1| hypothetical protein CLOSTASPAR_01794 [Clostridium asparagiforme
           DSM 15981]
          Length = 383

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 7/134 (5%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
           L+ E       ++ + +++A+        +  L +    +    +   + QE        
Sbjct: 245 LAYEPMLVNDRRQIRAVREAAGKGTYRGLYEELGNISFGRLAAIRSKEVDQEKKAYVSAC 304

Query: 97  KEKLKKSQDEFIKIRDRFNTYKMFKSTL-------ASLTLAKYLNAHYEEAKKKNCVLDF 149
           +++ KK+  +  +     +  +M ++           L L +  +  Y E K+   VLDF
Sbjct: 305 RDRAKKAVAKCQENYGVQSPEEMVEAVRGTAGVISTLLDLTEDFDRCYREKKRDRNVLDF 364

Query: 150 EDLIINTNDLLKKR 163
            DL     ++L + 
Sbjct: 365 NDLEHLALEVLMEP 378


>gi|19745860|ref|NP_606996.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS8232]
 gi|81632924|sp|Q8P1J3|ADDB_STRP8 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|19748010|gb|AAL97495.1| putative ATP-dependent exonuclease, subunit B [Streptococcus
           pyogenes MGAS8232]
          Length = 1071

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 73/653 (11%), Positives = 172/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLVDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLKKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVPTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                +     +I++ 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIKVIDQEKNFHLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ + +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGVVDYKSSANQF-DIGTFYNGLSPQLVTYLAALKQIAPH 922


>gi|20513164|emb|CAD20136.1| DNA helicase [Buchnera aphidicola (Pemphigus spyrothecae)]
          Length = 190

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 39/147 (26%)

Query: 528 VLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
            +D  + +  +     E     +L E++++        K+  + + N + +MT+H +KGL
Sbjct: 23  NVDTLVKWIKQMLTGNEIEKPLNLSEIVAKFILRDIVDKKEENTHINTIHLMTLHASKGL 82

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
           E P VF++     +  H      +                                    
Sbjct: 83  EFPFVFIIGMEEGILPHHSTIISN-----------------------------------N 107

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNT 670
            +E  RL+YVG+TRA  +L +      
Sbjct: 108 IDEERRLVYVGITRAKKELFLSYCKKR 134


>gi|161830979|ref|YP_001597081.1| hypothetical protein COXBURSA331_A1374 [Coxiella burnetii RSA 331]
 gi|161762846|gb|ABX78488.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
          Length = 862

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 118/410 (28%), Gaps = 66/410 (16%)

Query: 525 VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
             + L           +Q +  +  +L+ +L  +     +  S+ ++ ++I+ +    G 
Sbjct: 410 RWENLLHEYAALDTFTQQQTRKNALQLLRQLAHHTL--FQPMSSQNSSIQILGLLETTGH 467

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
               +++     + +         +          P+ + +     +  +   K   + T
Sbjct: 468 YFDKLWIAGLNDKKWPRVASPNPFL----------PLSLQRRCQMPHASA---KREMEYT 514

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +  NRLL     +++  +I+       + + S           +  + +      L   
Sbjct: 515 LQLQNRLL-----KSAPAIILSAPLQEGDIQLSTSPLIRHFPEINNEDLQLTAWQPLKAH 569

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
           + K + +        P     E       L+  Q I                        
Sbjct: 570 LFKIKMLETIEDAQAPALQENEPMSGGSGLLQSQSIC---------------PFQAFAKV 614

Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLL----------QVIFTLPEHKRKNFITS---YCT 810
                 L    +      RG  +H+ L          Q + +  + + +N I     +  
Sbjct: 615 RLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNSSSDGELENIIDETITHLI 674

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN---CPKKDIIISGR 867
              KL            + +L++N      +         VS +          + +  R
Sbjct: 675 SQEKLIQPLFLNTEKKRLKQLIKN----WLLLEKKRPPFEVSQRETKRHIKIGPLRLEVR 730

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEI---EHIPYTHIAQLSIY-EKILKD 913
           ID+I     N FI +YKT      +    + +      QL +Y     ++
Sbjct: 731 IDRI---DNNCFIIDYKTGGQNSVDDWFGDRLKS---IQLPLYCAYAARE 774


>gi|307111214|gb|EFN59449.1| hypothetical protein CHLNCDRAFT_56762 [Chlorella variabilis]
          Length = 922

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/629 (9%), Positives = 133/629 (21%), Gaps = 120/629 (19%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQD 187
                +   Y+   ++ C++   DL +    LL              +   H+L+DE QD
Sbjct: 243 RQLARVAVAYQAELRRQCLVPLSDLPLLARQLLA---ARGGALAWAQERWTHLLVDEFQD 299

Query: 188 TSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKR 247
                                  S+   +FA                          Q+ 
Sbjct: 300 -----------------------SAACMIFA------------------------DYQRH 312

Query: 248 ATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGT 307
                     + L  +FRSTA I      +                    R   + Q  T
Sbjct: 313 FGA-----RKLCLQTNFRSTAAICAFGCTLLHGNRRDAEGGMVPARAGACRPVHVRQFHT 367

Query: 308 VQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGK 367
            +     ++    +   ++    S    L         A   A   +++           
Sbjct: 368 AEEEAAALADEVLRLWREEGVAYSSVCVLY-RCLRLQGAELHAPLTASLRRLGIPHVIAG 426

Query: 368 KRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF 427
              +   +   +            +    +    +   G  R +       +    L   
Sbjct: 427 HGRL--AEDPAVAALLAYLAASLEVDPAFEVVLGLPHHGLGREVCGALAQQQAAARLAGQ 484

Query: 428 ILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQR-----HETETVYEYIQKFANCGISKFQ 482
           +      L+    + +          ++               +   + +     + +  
Sbjct: 485 L--PPSLLACAEQVCTQAEAMLTQAPWQGQQAAVQVGPQSASQLEHVVSQLYTGDLQELS 542

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID--------------- 527
            ++  +  +               +L                                  
Sbjct: 543 RLVLLLRGMRRAVGQEPLPRALRRVLQDSGLAAWLQQHGPAGAAAAVGSQQQRLGGGGDL 602

Query: 528 ------VLDEFLNFTLRNEQ------------NSYSSLQELISELEQYPPTIKRAHSANH 569
                 VLD+        +Q            +      +  S    +         A  
Sbjct: 603 PASLRCVLDKAEQLAAEWQQQQAEGRGRRPAGSGVGGAADGGSWCPAHAAGAASQQEAGE 662

Query: 570 NEVRIMTVHTAKGLESPVVFL--------------VDTGSQVFS-------HKHIKKMHI 608
             VR +    A    +    +                      +             + +
Sbjct: 663 ELVRELLARLATDTAADECAVQRRSGAASQRQQQAPGCDPGALTIGTIHSAKGLEWPVVL 722

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
           +PS+        + P +    +  + L    +    EE  RL +V  TRA D L++    
Sbjct: 723 LPSVCQGLLPLRFRPPAWQAGDGAAALRACPRAH-LEEERRLFHVAATRARDTLLVSFVQ 781

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKK 697
                  +           +      ++ 
Sbjct: 782 PPPPGAPAEPGDEELEASAAPAPQPELEP 810


>gi|118086180|ref|XP_418827.2| PREDICTED: similar to KIAA0342 protein [Gallus gallus]
          Length = 2967

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 21/166 (12%)

Query: 133  LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
            L   Y++ + +    D EDL+ N +  L +     W        I+    DE+QD +  +
Sbjct: 1381 LFCLYQQIRSQRGYFDEEDLLYNLSQRLSQLGELPW-------SIHEFYGDEIQDFTQAE 1433

Query: 193  WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRA 248
              ++              + P ++F  GD  QSI    +F  ++ +       +    + 
Sbjct: 1434 LALLMKCI----------NDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASKNTVDKK 1483

Query: 249  TNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                +   I +L  ++RS + IL++   V  + +     S D    
Sbjct: 1484 QRVRKPKRIYQLYQNYRSHSGILSLASGVVDLLQYYFPESFDRLPK 1529


>gi|326779024|ref|ZP_08238289.1| putative helicase [Streptomyces cf. griseus XylebKG-1]
 gi|326659357|gb|EGE44203.1| putative helicase [Streptomyces cf. griseus XylebKG-1]
          Length = 793

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 97/342 (28%), Gaps = 44/342 (12%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
              P  +   ++   S S   G  T  +    L+ +       E        FL      
Sbjct: 409 LLRPRARKLLLDALWSKSSGRGRYTDPQLVAELRSSFDEDVSTETP------FLEFLDAW 462

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-----SLTLAKYLNA 135
              +  + +     D + +L +     +   +     +  K   A            L  
Sbjct: 463 WPELTPRRVLAAMADER-RLARWSRRILNQGETRRLARSLKRLDADGGGPLSVHDVALLD 521

Query: 136 HYEEAK------KKNCVLDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEV 185
             +         ++    D  D +    +L+ +R+ + W R +       E  H+++DE 
Sbjct: 522 ELQALLGTPNRPRRKREADPLDQLTGLEELMPQREETQWERAERLAAERTEYAHVIVDEA 581

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +QW ++                  T   VGD  QS      ++P           
Sbjct: 582 QDLTPMQWRMV-----------GRRGRHATWTIVGDPAQS----SWSDPDEAAA-----A 621

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +      +      L +++R+ A+I  +  KV ++            +T         + 
Sbjct: 622 RDEALGSRPRRRFTLTVNYRNPAEIAELAAKVLALAMPGMESPAAVRSTGVVPRFEPVRG 681

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           G   L   V  +          +         +  +   LA 
Sbjct: 682 G--DLAATVREEAARLLAEVDGTVGVVVAMNRRAQAREWLAE 721


>gi|311742247|ref|ZP_07716057.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
 gi|311314740|gb|EFQ84647.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
          Length = 707

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 60/183 (32%), Gaps = 20/183 (10%)

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
           D    H+L+DE QD S +QW ++                  +   VGD  QS + +    
Sbjct: 483 DDGFAHVLVDEAQDLSPMQWRML-----------GRRGRHASWTIVGDPAQSSWPW---- 527

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                 E+    + A   G+   +  L  ++R++A+I  V  +V         L+     
Sbjct: 528 -----PEEAAAARAAALDGKPEHVFRLSTNYRNSAEIYDVAAQVARHAIPGADLAAAVRR 582

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
           T       +   G +    +  ++          +  +    + + ++      R    +
Sbjct: 583 TGEEPEHLVVAPGQLVGVARERAEKLLGRVDGTVAVVAPRARVAELTAELSETLRHHERL 642

Query: 354 SNM 356
             +
Sbjct: 643 RVL 645


>gi|168182033|ref|ZP_02616697.1| putative helicase [Clostridium botulinum Bf]
 gi|182674895|gb|EDT86856.1| putative helicase [Clostridium botulinum Bf]
          Length = 709

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 56/181 (30%), Gaps = 19/181 (10%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           K   EI HI+IDE QD S +Q+ V++ LT+            +++  VGD  Q       
Sbjct: 489 KYKNEIKHIVIDEAQDYSFLQFVVLKELTDC-----------QSITIVGDVNQRTLPCKA 537

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             P   L         +           L  S+RST +I+   +K     +    + E  
Sbjct: 538 EVPMLCL--------DSVFNRVDVEYFNLDKSYRSTKEIMEYANKHLKTNKIVPLVREGD 589

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   +    +  V  +   +     +      +       +  E    +    I  
Sbjct: 590 PVKEVTVKNSKEAIDKVNYYLSYLENKGYENIAIITTTLEQGKVIGSELKKQMYINLIER 649

Query: 352 T 352
            
Sbjct: 650 E 650


>gi|145481799|ref|XP_001426922.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124394000|emb|CAK59524.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2265

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 22/149 (14%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVI 196
           Y   K K+   D  DLI          +      +   Q +++I++DE+QD       ++
Sbjct: 649 YSRLKTKHNYYDILDLI-------NHINYQQTFCFDTIQYMHYIILDELQDVPKALLILL 701

Query: 197 RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK---RVLREKRINQKRATNAGQ 253
             +T               LF  GD  Q+I    G         L+++   ++   N   
Sbjct: 702 NRMT------------HIQLFLAGDNAQNIVKGIGMHFSQTVSCLQQENNYKQPIRNDKY 749

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPE 282
           K S I L  +FRS+  IL + + + +  E
Sbjct: 750 KISKIILSYNFRSSHQILQLGNTLVNALE 778


>gi|289648664|ref|ZP_06480007.1| putative DNA helicase [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 692

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 84/284 (29%), Gaps = 40/284 (14%)

Query: 1   LKNRFGLSLNESYELIYKDLWP--LPYFQVSDINKYVSLSMETGNPTILKKAQT----LQ 54
           L     L+  +    +    +   L      ++ + +  + + G    +         L 
Sbjct: 264 LHRAVHLASKDEDARVLLSTFSETLANALRGNLYRLIWNTPKLGERIDVAAMDAIGIRLY 323

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ-DEFIKIRDR 113
            A   +        +S+                       +  + +   Q +E+   RD 
Sbjct: 324 SAEFGKPALASREEISALLRDAASQVSGLKANAAFL--LSEWDDVVDAWQVNEWKSYRDA 381

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
               +  +   A   L     A  +    +   +   ++     +++ +R          
Sbjct: 382 KRLGRKTRLPEAQRALYWQAFAQVQMQLSQTGKITVAEMFAKLTEVMTQRKHPV------ 435

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
               ++I++DE QD S+ Q   + +++ +             LF  GD  Q I       
Sbjct: 436 ---FDYIVVDEAQDISVQQLRFLAAISGN---------RANALFFAGDLGQRI------- 476

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
                  +     ++     +     L +++R++  I +  D++
Sbjct: 477 ------FQTPFSWKSLGVDVRGRSRTLSINYRTSHQIRSKADRL 514


>gi|154500666|ref|ZP_02038704.1| hypothetical protein BACCAP_04339 [Bacteroides capillosus ATCC
           29799]
 gi|150270555|gb|EDM97864.1| hypothetical protein BACCAP_04339 [Bacteroides capillosus ATCC
           29799]
          Length = 442

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 68/452 (15%), Positives = 129/452 (28%), Gaps = 56/452 (12%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           + L+   + L +K  +   I   I    + I IDE QDT      +   LT     G   
Sbjct: 42  DGLLNIFHWLFQKYPLLGRI---IADRYDFIFIDEYQDTHA--EVLSDLLTLPTAYGI-- 94

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                T+   GD  QSIY     + +  ++                  I    ++R + +
Sbjct: 95  -----TIALFGDSMQSIYEDGVGDVEEYVK------------NLTLKSIPKADNYRCSYE 137

Query: 270 ILTVVDKV-FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
           ++ V+D +       +  L    +  +     R G    V                ++E 
Sbjct: 138 VIKVLDSLRIDEISQSVALKRLPSGQLEVSEDRHGLA-KVIYTVVDAKPSSRSPEEEKEQ 196

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
           + S  D           A+RI      +I T+   +         +      R       
Sbjct: 197 YRSLVD------HMIFEAQRIVPDSKILILTNKAIAEKNGFSTLYRTFS--DRYSDIKDQ 248

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFIL---SQEDDLSFVCMLKSPL 445
           I    R        S+   D   + +    KD  ++ + +         ++    L   +
Sbjct: 249 IENYLR--------SIQVLDIGEICNMYLHKDFNSVIKLVQKGGFSIHTVADKTKLHDII 300

Query: 446 FNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFT 505
             F +D    +        T    + K +   + K      ++  L   A + +  D + 
Sbjct: 301 QGFVDDTNLSVKDAVENAITF--KLMKQSEALVDKISSNEHFLDTLKQDALYPTFKDLY- 357

Query: 506 LILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAH 565
             L  K    +          +   EF  +  R E+  +     L            +  
Sbjct: 358 --LAGKNTFARIKDSIEFHSEE---EFKEYQRRYEKERFILAMRLCELKFCEVLNYVKYL 412

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQV 597
           +     + +   H  KG   P V +V   S  
Sbjct: 413 NEETEYITM---HKTKGTSIPSVIVVMAHSPR 441


>gi|308068559|ref|YP_003870164.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
 gi|305857838|gb|ADM69626.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
          Length = 790

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 23/172 (13%)

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
           ++ +  I H+ IDE QD S  Q    + L                + A+GD  Q+IY+ H
Sbjct: 539 FRSNSNIRHVFIDEAQDYSPFQLAFFKRLF-----------PQAKMTALGDFNQAIYA-H 586

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            +  +       +     T        I L  S+RST +I+      F+    A G    
Sbjct: 587 ASVLQDAEPLYDLYGADQTEM------ISLTRSYRSTQEIVE-----FTRGMVAGGEHIV 635

Query: 291 STTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                  +          +L +Q+ +          ES      +  + ++A
Sbjct: 636 PFNRKGEKPLVTEVRSREKLHQQIAANVTELLAEGYESIAVICKNADESAAA 687


>gi|325284348|ref|YP_004256888.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
 gi|324316412|gb|ADY27525.1| UvrD/REP helicase [Deinococcus proteolyticus MRP]
          Length = 879

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 76/231 (32%), Gaps = 32/231 (13%)

Query: 82  KNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAK 141
             +      +    + E +   + +  ++  + +      +    +    ++    +   
Sbjct: 126 ARVWAAARERLWVPVSEAVSLDRAQVRELLYQADAPPEMLNEPDIVNTLNWMLRSLQAES 185

Query: 142 KK----NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            +        DF DL+                      + + +++DE QD +        
Sbjct: 186 DRAFATREKPDFTDLLWWPYR-----------HGLNLGQYHVVILDEAQDFTP------- 227

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L + F +G      P    AVGD +QSIY +  A+P+  +                  +
Sbjct: 228 -LRQAFLLGLIAGERPGRFLAVGDAEQSIYQYSAADPQLFMSLGER---------PNTQV 277

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTV 308
           + L +SFR     +     V +  E+  G+   +   +   S++ G+  TV
Sbjct: 278 LPLSVSFRCPTSHVEQARAVSTFIESPPGMKAGTVEHVEAASAQYGRGDTV 328


>gi|311063849|ref|YP_003970574.1| DNA helicase [Bifidobacterium bifidum PRL2010]
 gi|310866168|gb|ADP35537.1| DNA helicase [Bifidobacterium bifidum PRL2010]
          Length = 1427

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/399 (12%), Positives = 103/399 (25%), Gaps = 63/399 (15%)

Query: 53  LQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           L++       +    +L+                  +N         +    DE     D
Sbjct: 134 LREYFARDDWDG---VLADAVAGNDGEGGDADSGVGVNAAFVMQLRDMLARMDELGVSED 190

Query: 113 RFNTYKMF--------KSTLASLTLAKYLNAHYEEAKKK----NCVLDFEDLII---NTN 157
           R  T            +       LA  L   YE A  +       LD   L++      
Sbjct: 191 REGTALSALRHWSPRVERLHVQWRLAFALRREYETAVSRMYSGEYRLDSSRLLVEGAKAV 250

Query: 158 DLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLF 217
            ++   D+              +++D+ QD +   +  +++L            +   L 
Sbjct: 251 GMVGDDDLP-----------RLLVVDDCQDLTFAGFTFLKAL----------RGAGTRLL 289

Query: 218 AVGDEKQSIYSFHGAEPK-RVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
            VG+  +++ +F G+ P+    + +R             +      + R     +  VD 
Sbjct: 290 LVGNPDEAVQTFRGSYPEYLFDQIRRQLGADMVRLSAGGAG-----NGRVEERAVDHVDG 344

Query: 277 VFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHD-SQCNPQQESWTSYFDS 335
                  A  +S    +T         + G +      +      Q +P     +     
Sbjct: 345 YTYRDLVASRISLSIRSTQDETVPLPQRPGKLPQLPASLPIVALPQADPLPGDGSLKTAL 404

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                  +     + + I                     D+ V+         I    R 
Sbjct: 405 YRSADEET---EDVVWRIKQ---------AHILEGRNWNDMAVIAHDNATVRTIGERLR- 451

Query: 396 LKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQED 433
                 + V  +     L D   ++ L AL    + +  
Sbjct: 452 ---HDGVPVRYSSVTRPLKDEPFVQGLFALLELAMLRNQ 487



 Score = 51.1 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/420 (9%), Positives = 103/420 (24%), Gaps = 68/420 (16%)

Query: 447  NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
              S      +     E     +   +      +    V + + +L       +    +  
Sbjct: 674  GASGITADDVLAAVQEVCGRGDPHSRVFAHLWNLVGTVAQGLRQLPAKEPQYALSVAWNA 733

Query: 507  ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE----QNSYSSLQELISELEQYPPTIK 562
               A + +++ ++          D         +      +   L E  +++        
Sbjct: 734  CDVASRWQREALNNTDAGRAAN-DRLDTAMRLFDYASGSAASRDLPEFFAQVRAMRIEAD 792

Query: 563  RAHSANH--NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPI 620
                       V + T   + G   P+V++      ++ +   +      ++     +  
Sbjct: 793  SLAKVAPIDEAVTLTTPAGSAGRHWPLVWIPAIQQGIWPNLAARN-----TMFGGEDLAD 847

Query: 621  WIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKH------------- 667
             +      ++        L+     E   LL V +TRAS+Q+                  
Sbjct: 848  VMLYGGLSDDSGEHGDNKLESVLYAEQKSLL-VALTRASEQVTASAVYNDDLTPSDFLYG 906

Query: 668  --------------------------------SNTSNEKKSNQRTWYDMVYDSFHNDERV 695
                                            ++      + +         S  + + V
Sbjct: 907  YMPERFNRERHASAEGREYSQVGEAGRLQGLDADPRGLVAAARVALAVYPRGSKESQDAV 966

Query: 696  KKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPY 755
              ++L  S   +      W              T+       +  K      ++ +    
Sbjct: 967  DALRLLASNGVEAADITRWPFLDEVEDASSGSRTVGSRAAAPEPDKAAEGTGQSSVPRIA 1026

Query: 756  ILNPSTIDTKGKTN--------LESLLSDNQTFNRGLIIHKLLQVIFT--LPEHKRKNFI 805
             L+PS +D+                  + +   + G +IH + +      L     ++ +
Sbjct: 1027 TLSPSAVDSIWGCPVCWMMENRFTGPRAGSVATSFGSLIHAVAETASNEGLDAADWRDDL 1086


>gi|262383470|ref|ZP_06076606.1| UvrD/REP helicase [Bacteroides sp. 2_1_33B]
 gi|262294368|gb|EEY82300.1| UvrD/REP helicase [Bacteroides sp. 2_1_33B]
          Length = 702

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 29/147 (19%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           L   Y   K++   +D  +L   T + L + +V             +++ DE QD S  +
Sbjct: 401 LVEKYVALKQERKYVDRLELFNETTNYLNEHNVRP---------FTNVIADEFQDFSNPE 451

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            + +R+L  +             LF  GD  Q IYS            K        N  
Sbjct: 452 LKFLRALVAE---------GRNDLFLTGDPMQRIYSGR----------KINFSAAGINV- 491

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFS 279
           +      L +++R+T  I  V   +  
Sbjct: 492 RGIRSRRLKINYRTTEPIKRVAVSIIK 518



 Score = 42.6 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 24/107 (22%)

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
               + V + T H+ KGLE   V L+    +    K  +                     
Sbjct: 610 QGASDGVSLCTFHSLKGLEFKAVILMGINERNVPSKATEAYP------------------ 651

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                  + +    KK        LLYV +TRA   + +  +     
Sbjct: 652 ------FNGMDALEKKEYLSSKRSLLYVAITRARGLVYMVGYGEPCG 692


>gi|257456391|ref|ZP_05621587.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257446051|gb|EEV21098.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 919

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 71/664 (10%), Positives = 179/664 (26%), Gaps = 51/664 (7%)

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASIL------ARRIA 350
               R       +L        ++   P  +  T   +      +   L      A  IA
Sbjct: 190 FDEYRDLLEERPELSVLPAPAFNAGTTPLIQFGTMREEIRSTVLAVEQLLTSGVPADDIA 249

Query: 351 YTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRF 410
            +I+ +                  +  +  +  +    + F           S       
Sbjct: 250 LSIAGIEEVVPYLKREFALRNIPAEFRLGFKLGEQQAGLLFTLLEQCVQEHYSFGSLKPL 309

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFK------ICTQRHETE 464
           +L  H+  K    +   I    +       L S        +I+K      I    H + 
Sbjct: 310 LLNPHIPWKHPQQIQAVI----NFGIKNNCLVSWKDGEHYKNIWKEAFKLPIPYNPHSSV 365

Query: 465 TVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNE 524
              +  ++ A   +  F    + + +    ++    +  F        G     +     
Sbjct: 366 EAEQAEKEQAKDWLLPFMKAAERLVQAKTFSEVQRQYILFRTQYLNIDGFSFEDNAVIGR 425

Query: 525 VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLE 584
            + ++ E             +   +                      V I     A    
Sbjct: 426 CVTLMQELTQLEQDFADCLPA---QPYRFFTAQLAREIYVPQNTGRAVSIFPFRVAAATP 482

Query: 585 SPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQ 644
               F+++   +            +P L  D    + + +  +     +   ++      
Sbjct: 483 FAHHFVLNCNQKA----SRVIYQKLPFLRKDKRDVLGVVEKDATQAFFAVYAEYGAVRFS 538

Query: 645 EEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSI 704
                     ++      +        ++    +  ++   YDS      V+K       
Sbjct: 539 ASEQTFAGFTVSNGIFIALAPSPDFDESDSFLQEYHFFKREYDSPAALYSVQKTGFEQFA 598

Query: 705 NKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDT 764
           +  +   + + T     +     E +K         +   S +      P     S+  +
Sbjct: 599 SIKKERGFSFLTEPFNGSLPVLSEKLKAGHYTDGAFRISQSGLHLFSGCPAQWFLSSALS 658

Query: 765 KGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPA------ 818
             + + ++ L + +    G+I H++L+ ++       + FI+++     +   +      
Sbjct: 659 IDEEDTDAELFNPRY--IGIICHRILERLYQRIRETDRVFISAHLADYREWAESIFNETV 716

Query: 819 --------KEYKNLLLSIT-RLLENPMMTTAMSC---DSYSEVSVSGKINCPKKDIIISG 866
                         + SI  R L++            D Y+   + G++     DI+  G
Sbjct: 717 HSQTDFRGPLAAPFIESIKKRSLKSVDFVLTFDAEKLDGYAPYLMEGELQHRNGDILYHG 776

Query: 867 RIDQIS--ISQQNIFIFEYKTHHHVPQEI---EHIPYTHIAQLSIYEKILKDSYPNKSLV 921
            +D+I+   ++    I +YKT           E +      Q+ +Y  + ++    + L 
Sbjct: 777 LVDRIAYQEAEGRAVIIDYKTGKVPSATDYTSEAMRD---FQMPMYIFLAENRLKQEVLH 833

Query: 922 CLLI 925
              +
Sbjct: 834 AFFL 837


>gi|301163213|emb|CBW22763.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 957

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 67/500 (13%), Positives = 138/500 (27%), Gaps = 76/500 (15%)

Query: 468 EYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVID 527
           +          +  + +  YI EL+         +  +  +  +  R+     F      
Sbjct: 420 DKFLDILFTPRNGIRELCVYITELLKEVSVLYRQEQESDDIFNQLYRESLFKSFTL---- 475

Query: 528 VLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESP 586
            ++  LN    NE Q    +L+ L++++                 ++IM V   + L+  
Sbjct: 476 -VNRLLNLIDNNELQVRIETLKRLLNKILNAANIPFH--GEPAIGMQIMGVLETRNLDFR 532

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
            + L+            +   I  +L    G+     ++              +   + E
Sbjct: 533 NLLLLSLNEGQLPKSGGESSFIPYNLRKAFGMTTIEHKNAV------YAYYFYRLIQRAE 586

Query: 647 YNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINK 706
              L+Y                NTS++  +       M+         + +  L    + 
Sbjct: 587 NITLMY----------------NTSSDGLNRGEWSRFMLQFLIEWPHEISREYLEAGQSP 630

Query: 707 DEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKG 766
                   +        L R     +          + SP   +      L         
Sbjct: 631 QNSKEIRITKTPEIIDRLYRTYDFSRNP-----GALILSPSALNTYLDCRLKFYFRYVAR 685

Query: 767 KTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSYCTKNAKL------- 815
               + + ++  +   G I H+  Q+    +        K  +      N +L       
Sbjct: 686 LKAPDEVSAEIDSALFGTIFHRSAQLVYLDLTANKRDIHKEDLERLLRDNIRLQNYVDIA 745

Query: 816 -------WPAKEYKNL--LLSITRLLENPMMTTAMSCDS-YSEVSVSGKINCPKKDIIIS 865
                   P  E      +  I   +    +   +  D  Y+   + G      +DI I 
Sbjct: 746 FKEIFFHVPIDEKPEYNGIQLINSKVITSYLRQLLRNDLQYAPFRMMGMEQEVVEDIRIE 805

Query: 866 -----------GRIDQISISQQNIFIFEYKTHHHV--PQEIEHI------PYTHIAQLSI 906
                      G ID++   +  + I +YKT      P  IE +         +I Q  +
Sbjct: 806 GPVGKLSLKIGGTIDRMDSKEGTLRIVDYKTGGSPKVPANIEQLFTPAEGRPNYIFQTFL 865

Query: 907 YEKILKDSYPNKSLVCLLIY 926
           Y  I+      K +   L+Y
Sbjct: 866 YAAIMARQQALK-VAPSLLY 884


>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040500|gb|ACT57296.1| double-strand break repair protein AddB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1040

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/588 (10%), Positives = 149/588 (25%), Gaps = 98/588 (16%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +    +     + I++  +    L+  L    L +L   I    D ++   ++K PL 
Sbjct: 396 RNLARRVKLELTRFGINIDISAGIPLSTTLHSSILTSLLNAIFKLNDFMAIATLVKHPLA 455

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
            F   +  K  ++      +        +  I   + ++  +  +           + + 
Sbjct: 456 KFGFPE--KYLSRAKNALELVALRGNKNSYDIMDLKSLV--LDRIATQKNNTHVPHWQSR 511

Query: 507 ILGAKKGRQQFISRFGNEVIDVL-----------------------------------DE 531
           +    K     +     + I  L                                    +
Sbjct: 512 LSEEDKELAVLLVDHILQCITPLVTYKTNKNSTCGNLSISDWTKLTVTCLQNVCLDEHRK 571

Query: 532 FLNFTLRNEQNSYSSLQ------------ELISELE----QYPPTIKRAHSANHNEVRIM 575
             N     E  + SSL               I  ++           +      + + I+
Sbjct: 572 LPNLWFEEEGKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDGETVKPKIEKSSTLFIL 631

Query: 576 TVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDL 635
               ++ L    + L      V+     K   +   +  D  +           +     
Sbjct: 632 GTLESRLLNFDTLILGGLNEGVWPKNTAKNPFLSRVMQSDLNLKTAEKYIGQAAHDFEMA 691

Query: 636 IKHLKKSTQEEYNRLLY-VGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDER 694
                                +R   +L++   ++  +  K   + + D      +  + 
Sbjct: 692 NGTRHLIYTRSLRENNIPTIASRWLQRLLVLGGTDFFDNLKKRGQCYLDWTRKLDYTTK- 750

Query: 695 VKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEP 754
                                 H+    P    E   +     +I + +  P        
Sbjct: 751 --------------------QPHYKRPKPFPPLEAQPRTYSFSEIKQLINDPYAVYARRI 790

Query: 755 YILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAK 814
             L+           +     D    +RG + H ++  +     +K    I     +   
Sbjct: 791 LKLDF----------IPHFKKDPDRTDRGTLFHNIITELIKKRINKNTPEINHLMKQIID 840

Query: 815 LWPAKE-----YKNLLLSITRLLENPMMTTAMSCDSYSE---VSVSGKINCPKKDIIISG 866
               KE        +   +   + +  +       S  E   V++  K+      I ++G
Sbjct: 841 SHFEKENLPPHIDIIWRHLFHKISHSFLEHEEKIQSSIEKIFVNIPAKMAIESIGIHLTG 900

Query: 867 RIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             D+I + +     I +YKT  +  +  E        QLS+    LK 
Sbjct: 901 FADRIDLLKSGFVDITDYKTGDNPKK--ETAQKLIDPQLSLEAAALKA 946


>gi|51892441|ref|YP_075132.1| putative DNA helicase [Symbiobacterium thermophilum IAM 14863]
 gi|51856130|dbj|BAD40288.1| putative DNA helicase [Symbiobacterium thermophilum IAM 14863]
          Length = 693

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 91/282 (32%), Gaps = 32/282 (11%)

Query: 15  LIYKDLWPLPYFQVSDINKYVSLSMETGNPTI-LKKAQTLQQASQTQCIEERFSLLSSFF 73
            + +    L    + +    V++    G     + + + ++  +  Q +E R + L    
Sbjct: 276 ALARFSEQLLESLLGENRNLVTVRTSDGVAEDIVSRLEPVRVVTDRQDLEARIARLMDRH 335

Query: 74  LTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYL 133
                   + +    +  +   + +   ++     +      T +      A+      L
Sbjct: 336 QDHLPESVRRLRPDYVLDEIEWIID--GRNLKSLDEYLAASRTGRGIALGEAARRAVWEL 393

Query: 134 NAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQW 193
              +    +++ +     L +   + ++          +  Q  + ++IDE QD +    
Sbjct: 394 YTAFCTELERDGLCSPSRLRVRALEHVR--------AGRGGQRYDAVVIDEAQDLTPAML 445

Query: 194 EVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253
            ++  L E          S R ++   D  QSIY F G   + V + +   + RA     
Sbjct: 446 SLLVELAE----------SERGIYVTADPSQSIY-FRGFSWQLVHQ-RLRFRGRAK---- 489

Query: 254 KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTI 295
                 L  ++RST +I  V              S  + + +
Sbjct: 490 -----LLRRNYRSTREIAEVARAFLEKSGAGDPESLQTDSPV 526


>gi|73990090|ref|XP_534218.2| PREDICTED: hypothetical protein XP_534218 [Canis familiaris]
          Length = 2975

 Score = 58.8 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 90/277 (32%), Gaps = 25/277 (9%)

Query: 25   YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
               + +  +    +   G+     KA   +       +   F + ++    +    + + 
Sbjct: 1292 ELTIPNWQEDEEEAEVDGDNGEEDKAAETRTCDTDPRVYVTFEVFTNEIWPKMIKGKTSY 1351

Query: 85   IT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
                  +EI        E L   Q    +   +    K   +     +    L   Y++ 
Sbjct: 1352 NPALIWKEIKSFLKGSFEALSCPQGRLTEEAYKKLGRKRSPNFKEDRSEIYSLFCLYQQI 1411

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            + +    D ED++ N +  L +  V  W        I+ +  DE+QD +  +  ++    
Sbjct: 1412 RSQKGYFDEEDVLYNLSRRLSRLKVLPW-------SIHELYGDEIQDFTQAELALLMKCI 1464

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRATNAGQKFS 256
                      + P  +F  GD  QSI    +F  ++ +       R    +     +   
Sbjct: 1465 ----------NDPNAMFLTGDTAQSIMKGVAFRFSDLRSLFHYASRSTVDKQCAVRKPKK 1514

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            I +L  ++RS + IL +   V  + +     S D   
Sbjct: 1515 IHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLP 1551


>gi|323450106|gb|EGB05989.1| hypothetical protein AURANDRAFT_65956 [Aureococcus anophagefferens]
          Length = 1048

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 18/129 (13%)

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
           ++  +   +++IDE QD +   +E+       F      +        VGD  QS+Y++ 
Sbjct: 635 FEGARGYAYVVIDEAQDLNPPHFEL-------FVSAPRRNGDRVAHAIVGDPYQSLYAWR 687

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
           GA                + A    + + L  SFR    +  +   V    E     S  
Sbjct: 688 GARNALK-----------SAAPLATTTVSLTKSFRFGPAVACLATAVLQECEARPEGSPK 736

Query: 291 STTTIRHRS 299
                    
Sbjct: 737 PPPLEGVGP 745


>gi|322376657|ref|ZP_08051150.1| ATP-dependent nuclease subunit B [Streptococcus sp. M334]
 gi|321282464|gb|EFX59471.1| ATP-dependent nuclease subunit B [Streptococcus sp. M334]
          Length = 1108

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 78/721 (10%), Positives = 185/721 (25%), Gaps = 102/721 (14%)

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
           + P     L + S   + H +S+                   + +   ES   + +    
Sbjct: 245 ASPFREGNLYQASVEFLHHLASKYQTPAQDYSQTHEKMDSFDKASRLLESSYDFSELTLD 304

Query: 339 ESSASILARRI-----AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                    +I           ++             +  K   +L+    D P      
Sbjct: 305 VDEKDRENLQIWSCLTQKEELELVARSIRQKLHANPDLSYKHFRILL---GDVPSYQLSL 361

Query: 394 RFLKNDYKISVVGNDRFILTDHL----------------AIKDLMALGRFILSQEDDLSF 437
           + + + Y+I         +  H                   +DL+ L R  L  + + S 
Sbjct: 362 KTIFDQYQIPFYLGRSESMAHHPLTQFVESILALKRYRFRQEDLINLLRTGLYTDLNQSD 421

Query: 438 VCMLKSPLFNFS-------EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE 490
           +   +  +           +    K    +   E +     +      + F    +    
Sbjct: 422 IDAFEQYIRYLGINGLPAFQQTFTKSHHGKFSLERLNALRLRILTPLETLFTSRKQKTEN 481

Query: 491 LIHIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQE 549
           L+     F         +       +        EV       L         S  SL++
Sbjct: 482 LLQKWNVFLKEGAVTKQLQDLTATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLED 541

Query: 550 LISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            ++ L      +  R   A  + V + +      L +  V+ +                +
Sbjct: 542 FLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLTADFVYAIGLTQDNLPKIAQNTSLL 601

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
                          Q+ ++       +        ++    +   +  A  QL++   S
Sbjct: 602 TDEER----------QNLNQETEEGAQLLIASSENLKKNRYTMISLVNSARKQLVLSAPS 651

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDE--------RVKKIKLTNSINKDEWIAYEWSTHHPE 720
             +  +        ++V+  F   E          + +   +S+       ++       
Sbjct: 652 LFNESESKESTYLQELVHFGFSRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSET 711

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS----- 775
              L   + + ++M ++     L +P          L   T+        E  LS     
Sbjct: 712 EQDLTFVKVLARVMGKKLNQHGLANPALPTSPSSKPLTKDTLQALYPAEQEFYLSTSGLT 771

Query: 776 -----------------------DNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN 812
                                       + G  +H++ +    LP+    +         
Sbjct: 772 EFYRNQYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPDEDSFD--HRLEQAI 829

Query: 813 AKLWPAKEYKNLLLSITR-------LLENPM-----MTTAMSCDSYSEVSVSGKIN---- 856
            +    +E++ +             LL+        +    + ++  E +  G  +    
Sbjct: 830 QETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEANFGGKDQAFI 889

Query: 857 --CPKKDIIISGRIDQISI--SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILK 912
                + + + G++D+I    +   I + +YK+     Q   H      +QL  Y   LK
Sbjct: 890 QLDNGRSVFVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFP-HFFNGLNSQLPTYLAALK 948

Query: 913 D 913
            
Sbjct: 949 R 949


>gi|190895613|ref|YP_001985905.1| hypothetical protein RHECIAT_PA0000298 [Rhizobium etli CIAT 652]
 gi|190699558|gb|ACE93642.1| hypothetical protein RHECIAT_PA0000298 [Rhizobium etli CIAT 652]
          Length = 636

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 11/94 (11%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +N    F ++     +L+        +   +      +LIDE+QDT   Q E+I  L  D
Sbjct: 199 QNGYFFFSEMYTLARELISANPS---VIDALRHRFPLVLIDEMQDTLRFQDELINHLFGD 255

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
                       TL  +GD  Q+I+     EP  
Sbjct: 256 AAD--------CTLQKIGDPDQAIFDGMAGEPPN 281


>gi|126653495|ref|ZP_01725588.1| YvgS [Bacillus sp. B14905]
 gi|126589773|gb|EAZ83907.1| YvgS [Bacillus sp. B14905]
          Length = 767

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 86/258 (33%), Gaps = 32/258 (12%)

Query: 48  KKAQTLQQASQTQCIEERFSLLSSFF--LTQKFTPQKNIITQEINKKSPDLKEKLKKSQD 105
           ++A+  +   +           S  +  L  +    +N       ++    ++ +KK   
Sbjct: 406 ERAERTKDWVEEATELLDKEDYSKSYSELLYEGRYTENSFDDFDQERKKLARQIVKKHFK 465

Query: 106 EFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDF--EDLIINTNDLLKKR 163
                 ++     +  +      ++  L   +++    +   D     L      L+   
Sbjct: 466 PLRNSVNQLRFVHILGTYRQLFDISNSLYQEFQQ-LVPDNWEDICQNTLPNLAKRLIAYE 524

Query: 164 DVSA--WIRYKIDQE-----INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
           D +   +++ KI+ +     I H+LIDE QD S  Q  V++ L                +
Sbjct: 525 DAAPFLYLQDKIEGQQTNTTIRHVLIDEAQDYSPFQLTVLQQLF-----------PKARM 573

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             +GD  Q+I+      P  +              G+    + L  S+RST  I+ +  K
Sbjct: 574 TILGDGHQTIHPHTFDNPSLL---------DPQLYGEHAEKMILTKSYRSTKQIIQLTAK 624

Query: 277 VFSIPENAQGLSEDSTTT 294
           + +     +  + D    
Sbjct: 625 ILNDGSEVEAFNRDGLEP 642


>gi|257467636|ref|NP_055646.2| TPR and ankyrin repeat-containing protein 1 [Homo sapiens]
 gi|205816263|sp|O15050|TRNK1_HUMAN RecName: Full=TPR and ankyrin repeat-containing protein 1; AltName:
            Full=Lupus brain antigen 1 homolog
          Length = 2925

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 25/280 (8%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                  +    +    +   G+ +   KA  ++       +   F +  +    +    +
Sbjct: 1235 AQEESTIPSWQEDEEEAEVDGDYSEEDKAVEMRTGDSDPRVYVTFEVFKNEIWPKMTKGR 1294

Query: 82   KNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
                     +EI        E L        +   +    K   +     +    L + Y
Sbjct: 1295 TAYNPALIWKEIKSFLKGSFEALSCPHGRLTEEVYKKLGRKRCPNFKEDRSEIYSLFSLY 1354

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            ++ + +    D ED++ N +  L K  V  W        I+ +  DE+QD +  +  ++ 
Sbjct: 1355 QQIRSQKGYFDEEDVLYNISRRLSKLRVLPW-------SIHELYGDEIQDFTQAELALLM 1407

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRATNAGQ 253
                         + P ++F  GD  QSI    +F  ++ +       R    +     +
Sbjct: 1408 KCI----------NDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASRNTIDKQCAVRK 1457

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
               I +L  ++RS + IL +   V  + +     S D   
Sbjct: 1458 PKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLP 1497


>gi|163857868|ref|YP_001632166.1| hypothetical protein Bpet3555 [Bordetella petrii DSM 12804]
 gi|163261596|emb|CAP43898.1| conserved hypothetical protein [Bordetella petrii]
          Length = 990

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 97/369 (26%), Gaps = 52/369 (14%)

Query: 574 IMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVS 633
           ++ +  A+G     ++++     V          +  ++    G P   P          
Sbjct: 567 VLGLLEAEGGHWDGIWILGLTDDVLPATPQPNPLLPLTVLRQAGAPRATP---------- 616

Query: 634 DLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDE 693
                 ++    E     Y  + R + ++++         +        D+   ++    
Sbjct: 617 -----ERERQWAEAL---YAALCRCAPEVVVSHAHLDGERELRPSPLIADVPPMAWQAPA 668

Query: 694 RVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINE 753
                 L   +  DE      +   P++        +  L  + + P   F   +     
Sbjct: 669 AAAAEVLPQQVLDDE-RGPPLAAPAPDSPRAGATGGLDVLDTQARNPLWAFVRHRLGARA 727

Query: 754 PYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKRKNFITSY- 808
                 +                     RG  +H+ L++    +                
Sbjct: 728 LADYADAANQNV----------------RGQFLHRALELVWRMLPDQEHLHDAMAQGRLP 771

Query: 809 -CTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVS--------VSGKINCPK 859
              + A    A E         R LE       ++     E          V       +
Sbjct: 772 GLVEQAVQEAADEELRAYPRALRELECERARAVLAAWLDLEARRLPFQVAQVEETHQWSR 831

Query: 860 KDIIISGRIDQISI-SQQNIFIFEYKTHHHV--PQEIEHIPYTHIAQLSIYEKILKDSYP 916
             + ++ R+D++   +     I +YKT      P+           QL  Y  +L    P
Sbjct: 832 GPLALTVRLDRLDRLADGRAVILDYKTGMAPGNPESDWARARPVNLQLPFYAAVLSGDTP 891

Query: 917 NKSLVCLLI 925
           +  +  L++
Sbjct: 892 DADVAALVL 900


>gi|327272054|ref|XP_003220801.1| PREDICTED: f-box only protein 18-like, partial [Anolis
           carolinensis]
          Length = 1114

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 27/117 (23%)

Query: 155 NTNDLLKKRDVSAWIRYK-IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
               ++    +  W   K +  + + IL+DE QD +    +++              S P
Sbjct: 694 MAYKMIHDGYLKLWQLQKPLLSDYDAILVDEAQDCTPAVMDIV-------------LSQP 740

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
             +  VGD  Q IYSF GA                        I  L  SFR  A+I
Sbjct: 741 CGVILVGDPHQQIYSFRGAVNAMSEV-------------PHTHIYYLTQSFRFGAEI 784


>gi|229136489|ref|ZP_04265203.1| Superfamily I DNA and RNA helicase [Bacillus cereus BDRD-ST196]
 gi|228646972|gb|EEL03093.1| Superfamily I DNA and RNA helicase [Bacillus cereus BDRD-ST196]
          Length = 478

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 30/151 (19%)

Query: 132 YLNAHYEEAKKKNCV-LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSL 190
            +   Y + +++N    D++DL       L+  D         D+   HI+IDE QD S 
Sbjct: 182 AVYERYLDIRERNDYRYDWDDLAHTVISELENDDDD-------DKMYKHIIIDEGQDLSP 234

Query: 191 IQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATN 250
           +   +++SL               ++   GD  Q IY    +     L   R        
Sbjct: 235 V---MLQSLAL-------AVPKDGSITFFGDVAQQIYGGRLSWRNAGLNVTRN------- 277

Query: 251 AGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
                 I +   ++R++ +I  +   +   P
Sbjct: 278 -----EIWKFDQNYRNSKEIADLAIAISKQP 303


>gi|290243069|ref|YP_003494739.1| superfamily I DNA/RNA helicase-like protein [Thioalkalivibrio sp.
           K90mix]
 gi|288945574|gb|ADC73272.1| superfamily I DNA/RNA helicase-like protein [Thioalkalivibrio sp.
           K90mix]
          Length = 519

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 74/260 (28%), Gaps = 43/260 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           +    + I++DE QDT+   ++++              S    L  VGD  QSIY+F  +
Sbjct: 190 LTGRFDCIILDEAQDTNAAVFDLLV-------------SQGLPLVVVGDTYQSIYAFRRS 236

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK-----------VFSIP 281
                            N         L  SFR   +I  V +            +    
Sbjct: 237 V-------------DVMNRVPGGCRYSLTQSFRFGPEIAEVANTLLGVFLDPKHLLIGAG 283

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFD--SLPQE 339
                L++         +       +        S  ++     + +W        L   
Sbjct: 284 PRGAVLTQGQWEYQGSNAGAPPCHLSRTRAGVFQSAVEAHEAGLRVAWWGGVKSYELWVL 343

Query: 340 SSASILARRIAYTISN-MIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL---ITFLTRF 395
               +LA      I + ++         ++     +D  +L R R        +  L   
Sbjct: 344 REVQLLADGRHRKIRDPLMQRFATVDALEEFAQSVQDRELLARIRIQRRFGKRLYDLVER 403

Query: 396 LKNDYKISVVGNDRFILTDH 415
           L+      V   DR + T H
Sbjct: 404 LQEAAVRDVWRADRIVSTAH 423


>gi|72162728|ref|YP_290385.1| superfamily protein I DNA/RNA helicase [Thermobifida fusca YX]
 gi|71916460|gb|AAZ56362.1| similar to Superfamily I DNA and RNA helicases [Thermobifida fusca
           YX]
          Length = 679

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/371 (11%), Positives = 86/371 (23%), Gaps = 59/371 (15%)

Query: 10  NESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPT--ILKKAQTLQQASQTQCIEERFS 67
            ++   +++  +      V          + T          +  L +      +  R  
Sbjct: 245 GKTVLALHRAAYLAERDAVEYGPAARPSVLLTTGSRTLAQTLSAQLDRLVSAPDVRRRIE 304

Query: 68  LLSSFFLTQ---------------KFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRD 112
           +++   L +                    +   T       P     L     + I  +D
Sbjct: 305 VVTVDSLARGVLSESTGIPPEILSDEELAERWRTAARIDGLPFSGRFLVDEWQQVILAQD 364

Query: 113 RFNTYK--MFKSTLASLTLAKYL-------NAHYEEAKKKNCVLDFEDLIINTNDLLKKR 163
             +       +     L LA             Y  A +      +  +       L+ +
Sbjct: 365 LTSLADYIRCERNGRMLHLAPEFRPHVWEAIQRYTGAMRAAGEWSYPQVAHEAARALRTQ 424

Query: 164 DVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
                          HI++ E QD     W ++R+              P  LF +GD  
Sbjct: 425 GP----------RYRHIVVTESQDLHPAHWRLLRA---------AVPEGPDDLFLLGDPA 465

Query: 224 QSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283
           Q +     +     +  +                  L  S+R + +IL     +      
Sbjct: 466 QRLVDTRVSLASLGINVR-------------GRGHRLRTSYRVSQEILDWALPILGRSTG 512

Query: 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSAS 343
                  S           G     + W  +     +Q     +  +       Q     
Sbjct: 513 PAAEGYASVLHGP-EPVVQGCASRAEEWTALSEWLQAQLAAGAQPESIAVAGRNQWVVRI 571

Query: 344 ILARRIAYTIS 354
           I     A  I+
Sbjct: 572 ITKELHANGIA 582



 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 26/108 (24%)

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             SA+ + VR+ T+H  KG E   V LV     +   K          +           
Sbjct: 587 NSSADVDAVRVGTLHGLKGQEFRYVALVGLSEPLLPPKAAISAAEGDPV----------- 635

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                            +   +E   LL+   TRA D L +      S
Sbjct: 636 ---------------AMEQVYQEERHLLFTACTRARDALYVSYVGAPS 668


>gi|290956621|ref|YP_003487803.1| helicase [Streptomyces scabiei 87.22]
 gi|260646147|emb|CBG69240.1| putative helicase [Streptomyces scabiei 87.22]
          Length = 764

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 56/449 (12%), Positives = 119/449 (26%), Gaps = 66/449 (14%)

Query: 4   RFGLSLNESYELIYK-DLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCI 62
           R  L+     EL+ + ++  +       + +  +                ++Q       
Sbjct: 322 RLRLASLVEPELLARVEIAHIDQLASRVLGENTAPGRGKQRVYDNVALNEMRQLLAELDD 381

Query: 63  EER-----FSLLSSFFLTQKFTPQKNIITQE--------INKKSPDLKEKLKKSQDEFIK 109
                           L Q    +                  +   + + +++      K
Sbjct: 382 RRWEPEFLLEEWEQVILGQSVPTRSAYFQARRAGRGRALTRPERNHIWKLIEQFTARLDK 441

Query: 110 IRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWI 169
           +          ++    +  A  + A     K +      +DLI          D S+ +
Sbjct: 442 LGVETWGQAAERAARYEIERAAKIQAR-RAHKAEVGG---KDLIHR--------DDSSGM 489

Query: 170 RYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSF 229
           RY ++    HI++DE QD     W+++R++ +           P  +F  GD  Q IY  
Sbjct: 490 RY-LNYRYRHIVVDEAQDLRPAHWKMLRAMADPDL--------PNDMFIAGDTHQRIYDH 540

Query: 230 HGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSE 289
             A     +  +                  L LS+R+T +IL    +V           +
Sbjct: 541 QVALGALGINIR-------------GRASRLTLSYRTTKEILAEALRVVEDKRVTYDDLD 587

Query: 290 DSTTTIR------------HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLP 337
           D T  +                 R        L   + +  +        ++      + 
Sbjct: 588 DGTDNLAGYRSVLHGPAPTFTPFRSWDDELAGLASTLRAWREELSTGGNGAYRDPSGRIA 647

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
              +   +   ++ T+  +I    I      +     D  V V        + +      
Sbjct: 648 VCVADRDM---VSQTMYYLITKANITCAELTKDGPKGDGEVHVGTMHRFKGLEY---QKL 701

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGR 426
                S     R  + +     D     R
Sbjct: 702 AIVGASDGIIPRTSVIERYRRDDPPRYER 730


>gi|255975399|ref|ZP_05425985.1| phage protein [Enterococcus faecalis T2]
 gi|255968271|gb|EET98893.1| phage protein [Enterococcus faecalis T2]
          Length = 269

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 76/194 (39%), Gaps = 29/194 (14%)

Query: 775 SDNQTFNRGLIIHKLLQ--VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
           SD +    G  +H   +   I  L + + K+ + S       L   +  + ++  +    
Sbjct: 51  SDPKALLVGNYVHSYFESSKIHDLFKKENKDKMYSSRKPYGLLKDFQIAEQMIQRLK--- 107

Query: 833 ENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKT--HHHVP 890
           E P        +   EV V+G+I    +++   GRID +++     +  + KT    H  
Sbjct: 108 EEPAFINLYKGE--KEVIVTGQI----ENVDWKGRIDCLNLEDG--YFVDIKTTKDIHER 159

Query: 891 QEIEHIPYT--------HIAQLSIYEKILKDSYPNK--SLVCLLIYVSEP---KVFIIPQ 937
           +  +             ++ Q+++Y+++L   Y  +   ++   +    P   K+  + +
Sbjct: 160 KWNDSYAERCTFIENYGYVLQMAVYKELLSQKYNREFVPIIAA-VSKQTPSEVKLITLDE 218

Query: 938 NKLNKAFAEISTKI 951
           +K++    ++   I
Sbjct: 219 DKMHFEMIQLKENI 232


>gi|307325242|ref|ZP_07604445.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
 gi|306889046|gb|EFN20029.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113]
          Length = 713

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 66/292 (22%), Gaps = 30/292 (10%)

Query: 99  KLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTND 158
            L +      +        +  +           L   +E        +    L      
Sbjct: 384 VLAQDVRSRDEYLVASRAGRGRRLNRPERAQVWGLIEAFEHRLDAAGEVGVTQLAAQAAR 443

Query: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFA 218
           +               +   HI++DE QD     W+++R+L                LF 
Sbjct: 444 IASGWSDET-------RPYRHIVVDEAQDLHAAHWKLLRALV---------PVGEDDLFI 487

Query: 219 VGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVF 278
           VGD  Q IY    A     +  +                  L L++R+T  IL     + 
Sbjct: 488 VGDAHQRIYDNRTALSAHGINVRGR------------RSRRLTLNYRTTRQILGTSLSLL 535

Query: 279 SIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQ 338
                                    +    +      +   +    + E W        +
Sbjct: 536 GDATFDDLDDAAEDLGGYRSVLGGAKPELTE--YPSTAAELTGLAGRVEEWLGEGLKEDE 593

Query: 339 ESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLIT 390
               +   +     +  +          K R   A    V V        + 
Sbjct: 594 IVVTARTNKLADAAVEALHNAGIKAVRVKPRQTPAIGSGVHVMTMHRIKGLE 645


>gi|122692291|ref|NP_001073679.1| F-box only protein 18 [Gallus gallus]
 gi|119873802|gb|ABM05617.1| F-box helicase [Gallus gallus]
          Length = 1012

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 26/96 (27%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
              + I +DE QD +    +++              S    +  VGD  Q IYSF GA  
Sbjct: 626 SGYDAIFVDEAQDCTPAIVDIV-------------LSQTCGVILVGDPHQQIYSFRGAVN 672

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                                 I  L  SFR   +I
Sbjct: 673 TLY-------------TVPHTHIYYLTQSFRFGPEI 695


>gi|153209588|ref|ZP_01947448.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
 gi|120575307|gb|EAX31931.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
          Length = 862

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/410 (12%), Positives = 118/410 (28%), Gaps = 66/410 (16%)

Query: 525 VIDVLDEFLNFTLRN-EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
             + L           +Q +  +  +L+ +L  +     +  S+ ++ ++I+ +    G 
Sbjct: 410 RWENLLHEYAALDTFTQQQTRKNALQLLRQLAHHTL--FQPMSSQNSSIQILGLLETTGH 467

Query: 584 ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKST 643
               +++     + +         +          P+ + +     +  +   K   + T
Sbjct: 468 YFDKLWIAGLNDKKWPPVASPNPFL----------PLSLQRRCQMPHASA---KREMEYT 514

Query: 644 QEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNS 703
            +  NRLL     +++  +I+       + + S           +  + +      L   
Sbjct: 515 LQLQNRLL-----KSAPAIILSTPLQEGDIQLSTSPLIRHFPEINNEDLQLPAWQPLKAH 569

Query: 704 INKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTID 763
           + K + +        P     E       L+  Q I                        
Sbjct: 570 LFKIKMLETIEDAQAPALQENEPMSGGSGLLQSQSIC---------------PFQAFAKV 614

Query: 764 TKGKTNLESLLSDNQTFNRGLIIHKLL----------QVIFTLPEHKRKNFITS---YCT 810
                 L    +      RG  +H+ L          Q + +  + + +N I     +  
Sbjct: 615 RLQAKPLNKPHTGLNGIERGNFVHQTLDLVWKKIKDWQTLNSSSDGELENIIDETITHLI 674

Query: 811 KNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKIN---CPKKDIIISGR 867
              KL            + +L++N      +         VS +          + +  R
Sbjct: 675 SQEKLIQPLFLNTEKKRLKQLIKN----WLLLEKKRPPFEVSQRETKRHIKIGPLRLEVR 730

Query: 868 IDQISISQQNIFIFEYKTHHHVPQEI---EHIPYTHIAQLSIY-EKILKD 913
           ID+I     N FI +YKT      +    + +      QL +Y     ++
Sbjct: 731 IDRI---DNNCFIIDYKTGGQNSVDDWFGDRLKS---IQLPLYCAYAARE 774


>gi|330869779|gb|EGH04488.1| hypothetical protein PSYAE_21540 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 452

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++                 T   VGD  Q +Y F GA
Sbjct: 187 LSQRFGAILLDEGQDVNPVIANLVQI-------------QKITQVTVGDRHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    R  +K             L  SFR    +  V + + S       L     
Sbjct: 234 VDALNSPAMRDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            T+  R+          L   V    ++ 
Sbjct: 283 PTLVKRALPDDLPHRTYLHRTVSGVIENA 311


>gi|254994524|ref|ZP_05276714.1| UvrD/REP helicase [Listeria monocytogenes FSL J2-064]
          Length = 319

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 111/351 (31%), Gaps = 51/351 (14%)

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG--- 406
           A  I ++   +  F +   +     + +VL   +     +    +       I  V    
Sbjct: 2   AMRILSLSSEEKPFQDQIGKP-NYTETIVLYPNKNQLKSMIIALQE----KGIPFVTKSD 56

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNF----------SEDDIFKI 456
           +D   +      K    L   I+  E       + K  + N           S D +   
Sbjct: 57  DDLLGIFGINFFKRSFNLLMDIIDAETIEIKKHLYKQLIKNICLYYYIPFAKSTDFVSDE 116

Query: 457 CTQRHETETVYEYIQKFANCGISKF-QHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQ 515
                E  T +   +K  +       + + + I+E I   +  +   F   ++   K ++
Sbjct: 117 TNYTSEKLTDFICKEKKVSKKEMALIKSIFRDINEFIK-TEELNIKVFVNWLVETPKVKK 175

Query: 516 QFISRFGNEVID---VLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEV 572
           Q I    + ++     +       L+    +  +L+      E+    ++   + N+N V
Sbjct: 176 QLIDEEKDWLLKEVSNVKTLKELILKY--KAARTLK------EEMADKLREYDNNNYNAV 227

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
            ++T+H++KGL    VF+                  +                     + 
Sbjct: 228 YLLTIHSSKGLGYKNVFVKGIYKNSLPDYRSVDKESI--------------------ELQ 267

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYD 683
             + +    +T EE  RL+YV +TRA + L +      +++         +
Sbjct: 268 PLIEQASPPTTMEEQRRLMYVALTRAKENLYVTYPREINDKPTLVSPFIKE 318


>gi|119584883|gb|EAW64479.1| hCG2042887, isoform CRA_c [Homo sapiens]
          Length = 2826

 Score = 58.8 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 25/280 (8%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                  +    +    +   G+ +   KA  ++       +   F +  +    +    +
Sbjct: 1136 AQEESTIPSWQEDEEEAEVDGDYSEEDKAVEMRTGDSDPRVYVTFEVFKNEIWPKMTKGR 1195

Query: 82   KNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
                     +EI        E L        +   +    K   +     +    L + Y
Sbjct: 1196 TAYNPALIWKEIKSFLKGSFEALSCPHGRLTEEVYKKLGRKRCPNFKEDRSEIYSLFSLY 1255

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            ++ + +    D ED++ N +  L K  V  W        I+ +  DE+QD +  +  ++ 
Sbjct: 1256 QQIRSQKGYFDEEDVLYNISRRLSKLRVLPW-------SIHELYGDEIQDFTQAELALLM 1308

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRATNAGQ 253
                         + P ++F  GD  QSI    +F  ++ +       R    +     +
Sbjct: 1309 KCI----------NDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASRNTIDKQCAVRK 1358

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
               I +L  ++RS + IL +   V  + +     S D   
Sbjct: 1359 PKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLP 1398


>gi|114586251|ref|XP_001173837.1| PREDICTED: lupus brain antigen 1 [Pan troglodytes]
          Length = 2987

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 25/280 (8%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                  +    +    +   G+ +   KA  ++       +   F +  +    +    +
Sbjct: 1308 AQEESTIPSWQEDEEEAEVDGDYSEEDKAVEMRMGDSDPRVYVTFEVFKNEIWPKMTKGR 1367

Query: 82   KNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
                     +EI        E L        +   +    K   +     +    L + Y
Sbjct: 1368 TAYNPALIWKEIKSFLKGSFEALSCPHGRLTEEVYKKLGRKRCPNFKEDRSEIYSLFSLY 1427

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            ++ + +    D ED++ N +  L K  V  W        I+ +  DE+QD +  +  ++ 
Sbjct: 1428 QQIRSQKGYFDEEDVLYNISRRLSKLRVLPW-------SIHELYGDEIQDFTQAELALLM 1480

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRATNAGQ 253
                         + P ++F  GD  QSI    +F  ++ +       R    +     +
Sbjct: 1481 KCI----------NDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASRNTIDKQCAVRK 1530

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
               I +L  ++RS + IL +   V  + +     S D   
Sbjct: 1531 PKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLP 1570


>gi|251771292|gb|EES51873.1| conserved protein of unknown function [Leptospirillum
           ferrodiazotrophum]
          Length = 321

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 72/237 (30%), Gaps = 39/237 (16%)

Query: 725 EREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNL---ESLLSDNQTFN 781
             E  I ++ +++ +P +                 S  D  G          L +++  +
Sbjct: 67  RVEGLIARIAEKRPLPPEEEERTALLDTLRREYAHSKKDRSGHNPPRKGFWGLLEHEGRD 126

Query: 782 RGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAM 841
                        ++P+   K  +          + +     L+        +      +
Sbjct: 127 F------------SIPDADWKPLVERAGEALGGFYRSWVLPELV--------SADPGDIL 166

Query: 842 SCDSYSEVSVSGKINCPKKDIIISGRIDQ-ISISQQNIFIFEYKTHHHVPQEIEHIPYTH 900
             D  +E+  +  ++    ++ +  +ID    +    + + ++KT           P  H
Sbjct: 167 DRD--AELR-TISLDVDGFEVPVHMKIDLAYRLHDGTVRVVDWKTGRPGS------PDEH 217

Query: 901 IAQLSIYE--KILKDSYPNKSLVCLLIYVSEP----KVFIIPQNKLNKAFAEISTKI 951
             QL++Y          P   +    +Y++      ++  +  + +++   E    I
Sbjct: 218 EGQLALYAWYYAKARGIPLDRIRLGPVYLAHRPERVELQPVSPDTVDRVLGETRDTI 274


>gi|257057472|ref|YP_003135304.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
 gi|256587344|gb|ACU98477.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM
           43017]
          Length = 737

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 59/188 (31%), Gaps = 32/188 (17%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L + +++  +     R                     +   + +      ++ F      
Sbjct: 386 LAQGIEERAEYLTVSRSGRGRRISRLQRADLW----AVFERFTQLLNAQNLITFTRAAAR 441

Query: 156 TNDL---LKKRDVSAW---IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
              +   L   +   +   IR     +  ++++DE QD     W +IR+L          
Sbjct: 442 AATIAAQLNPHEAPVFDSGIRRGALPKYRYVVVDEAQDLHPAHWRLIRALV--------- 492

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 LF VGD  Q IY     +P  + R              +     L +++R++ +
Sbjct: 493 PHDSDDLFIVGDAHQRIYG----KPIVLSR---------YGIETRGRSRRLTVNYRTSRE 539

Query: 270 ILTVVDKV 277
           IL    KV
Sbjct: 540 ILDWSLKV 547



 Score = 39.9 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 29/109 (26%)

Query: 564 AHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIP 623
             +A    VR+MT+H AKGLE   V +V    +                           
Sbjct: 639 DENALGEVVRVMTMHRAKGLEYRAVAIVGVSQRELP------------------------ 674

Query: 624 QSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                   V +L +  ++        L+YV  +RA + L I      S 
Sbjct: 675 -----PRGVRELKEPEREVAWARERGLVYVAGSRAREYLYISWAGERSE 718


>gi|323138128|ref|ZP_08073201.1| double-strand break repair protein AddB [Methylocystis sp. ATCC
           49242]
 gi|322396590|gb|EFX99118.1| double-strand break repair protein AddB [Methylocystis sp. ATCC
           49242]
          Length = 1027

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/457 (8%), Positives = 110/457 (24%), Gaps = 50/457 (10%)

Query: 467 YEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVI 526
           +    + ++      + +++ +             +  +    A +   + +++  +E  
Sbjct: 505 HPAAHRISDDEWRDIEALLRQLEAAFATYVSLRGENALSTWAQAHRAAFEALTQGASEAD 564

Query: 527 DVLDEFLNFTLRNEQNSYSSLQELISELEQYP----PTIKRAHSANHNEVRIMTVHTAKG 582
           D          R          + +S    +      T  R     H  ++I+    A+ 
Sbjct: 565 DGAQALFGLFDRLIAAEAPPGFDALSYASLFDRISFETTLRGPRRAHPRLKILGPLEARL 624

Query: 583 LESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS 642
           +E+ +V +      V+  +      +  S+     +     +     +     +      
Sbjct: 625 IEADLVLIGGLDEGVWPPQTDTGAFLNRSMRRQLDLSPPERRIGQSAHDFVMALGA---- 680

Query: 643 TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTN 702
                              +++ +            R    +   +       K      
Sbjct: 681 -----------------QSVVLSRAVKRGGSPTVASRFLTRLEALAGDAFAGCKARGDRM 723

Query: 703 SINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTI 762
                               P    +     +   ++ +    P          L P   
Sbjct: 724 LAIAAALDHPRDYVTIARPAPRPPIDLRPTKLSVTRVERLRRDPYAIYAEYVLKLVP--- 780

Query: 763 DTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPE--HKRKNFITSYCTKNAKLWPAKE 820
                  L  L ++     RG  +H+ L              +          +      
Sbjct: 781 -------LAPLGAEIGARERGTALHEALAEFVMRHPRGPLPPDARAQLHDMARRKLSDFF 833

Query: 821 YKNLLL-----SITRLLENPMMTTAMSCDSYSEVSVSG----KINCPKK-DIIISGRIDQ 870
                       I + L++ +           E+ +      ++         ++   D+
Sbjct: 834 LDPAFATFTWPRIAQGLDHALDFEQERRSEGCEIFIETRGAWRLPLEDGSTFTLTAVADR 893

Query: 871 ISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSI 906
           I +      ++F+YKT       ++ +      QL++
Sbjct: 894 IEVDPHGRAYVFDYKTGAPP--SVKQVGAGWAPQLTL 928


>gi|117924652|ref|YP_865269.1| UvrD/REP helicase [Magnetococcus sp. MC-1]
 gi|117608408|gb|ABK43863.1| UvrD/REP helicase [Magnetococcus sp. MC-1]
          Length = 712

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 68/276 (24%), Gaps = 33/276 (11%)

Query: 107 FIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVS 166
                      +  +    +      +   Y     +N + + +D + +   LL ++   
Sbjct: 390 VTDYFKAPRLGRGTRLNRKARKEVWAVFEEYRYLLDENGLREPDDAMRDALQLLDQKGH- 448

Query: 167 AWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226
                  D     +++DE QD     + +IR L  D             +F VGD  Q I
Sbjct: 449 -------DLPYCAVVVDEAQDMGHQAFRLIRRLVPD------GDEVQNDIFIVGDGHQRI 495

Query: 227 YSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286
           Y             +            +    +L +++R+T +       +         
Sbjct: 496 Y-------------RHKVVLGQCGVNIRGRSRKLRINYRTTEENRRWAVGLLEGVPVDDL 542

Query: 287 LSEDSTTTIRHRSSRIGQVG------TVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
                            Q          +  + +VS         QE  T    +     
Sbjct: 543 DGGADDQKGYKSLLHGEQPAVHHFKTAKEESDHIVSLLKECEANGQELSTVCIVARTNGI 602

Query: 341 SASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDI 376
                A   A  I   +             ++   +
Sbjct: 603 LEQYKAELEAAGIKTHMIHRGEAEKRSVTGVRLATM 638



 Score = 40.7 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 71/643 (11%), Positives = 150/643 (23%), Gaps = 85/643 (13%)

Query: 54  QQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDR 113
           +     +     F+ +    L     P+  I          +L     +  +E       
Sbjct: 123 KAIPAPEQPVGMFAEIRDRQLVSLGIPETLIDLVRTINDEDELDAMSSRMPEEAYDALVM 182

Query: 114 FNTYKMFKSTLASLTLA-------KYLNAHYE--EAKKKNCVLDFEDLIINTNDLLKKRD 164
                  +     L  A           A  E  ++K++  V+D +++ +          
Sbjct: 183 LAAGYSVEQVDQELVAASAEAVDTADFAAALETPDSKRRFYVVD-DEMELKA-------- 233

Query: 165 VSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ 224
               I     ++    L          Q +++               + +T+ A+   K 
Sbjct: 234 ----ILSAPLEKWRVFL-------HPSQHKLVNRDWNGPVRVLGGAGTGKTVVALHRAK- 281

Query: 225 SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT---VVDKVFSIP 281
            +      + ++ +      +  A +       I    +F S  ++      V +     
Sbjct: 282 WLAQTRCQDGRKRVLFTTFTRNLAADIKANLRKICGEETF-SRIEVTNLDRWVSEFLRKN 340

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVG--------TVQLWEQVVSQHDSQCNPQQESWTSYF 333
                +     T      +                + WEQV+                  
Sbjct: 341 GYEFEIDFGRRTGPLWEKALTMMPSDLGYEPSFYREEWEQVIQPQGITTVTDYFKAPRLG 400

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                   A      +      ++  + +             + +L +K  D P    + 
Sbjct: 401 RGTRLNRKARKEVWAVFEEYRYLLDENGLREPDD---AMRDALQLLDQKGHDLPYCAVVV 457

Query: 394 RFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI 453
              ++    +     R +        D+          +       +L     N      
Sbjct: 458 DEAQDMGHQAFRLIRRLVPDGDEVQNDIFI---VGDGHQRIYRHKVVLGQCGVNIRGRSR 514

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKG 513
                 R   E     +       +               +     P           K 
Sbjct: 515 KLRINYRTTEENRRWAVGLLEGVPVDDLDGGADDQKGYKSLLHGEQPAV---HHFKTAKE 571

Query: 514 RQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNE-- 571
               I     E      E     +    N    L++  +ELE         H     +  
Sbjct: 572 ESDHIVSLLKECEANGQELSTVCIVARTNGI--LEQYKAELEAAGIKTHMIHRGEAEKRS 629

Query: 572 ---VRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSR 628
              VR+ T+H  KGLE   + +      +            P +                
Sbjct: 630 VTGVRLATMHRIKGLEFETIIVGSVNEGIVPFSRAVTNTDDPVV---------------- 673

Query: 629 NNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                      +K ++     LLYV  TRA  Q+++C +   S
Sbjct: 674 -----------RKESENRERALLYVAATRAKRQVVVCSYGRAS 705


>gi|289628793|ref|ZP_06461747.1| hypothetical protein PsyrpaN_27260 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 459

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++                 T   VGD  Q +Y F GA
Sbjct: 187 LSQRFGAILLDEGQDVNPVIANLVQI-------------QKITQVTVGDRHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    R  +K             L  SFR    +  V + + S       L     
Sbjct: 234 VDALNSPAMRDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            T+  R+          L   V    ++ 
Sbjct: 283 PTLVKRALPDDLPHRTYLHRTVSGVIENA 311


>gi|330885749|gb|EGH19898.1| hypothetical protein Pgy4_43962 [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 483

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++                 T   VGD  Q +Y F GA
Sbjct: 187 LSQRFGAILLDEGQDVNPVIANLVQI-------------QKITQVTVGDRHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    R  +K             L  SFR    +  V + + S       L     
Sbjct: 234 VDALNSPAMRDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            T+  R+          L   V    ++ 
Sbjct: 283 PTLVKRALPDDLPHRTYLHRTVSGVIENA 311


>gi|326911025|ref|XP_003201863.1| PREDICTED: f-box only protein 18-like [Meleagris gallopavo]
          Length = 933

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 26/96 (27%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
              + I +DE QD +    +++              S    +  VGD  Q IYSF GA  
Sbjct: 626 SGYDAIFVDEAQDCTPAIVDIV-------------LSQTCGVILVGDPHQQIYSFRGAVN 672

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                                 I  L  SFR   +I
Sbjct: 673 TLY-------------TVPHTHIYYLTQSFRFGPEI 695


>gi|284030793|ref|YP_003380724.1| Superfamily I DNA and RNA helicase-like protein [Kribbella flavida
           DSM 17836]
 gi|283810086|gb|ADB31925.1| Superfamily I DNA and RNA helicase-like protein [Kribbella flavida
           DSM 17836]
          Length = 743

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           +E  H+L+DE QD S +QW ++                  +   VGD  QS         
Sbjct: 522 EEYAHVLVDEAQDLSPMQWRMV-----------TRRGPQASWTIVGDPAQS-------SW 563

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                 +   +   ++  +      L  ++R++A+I     +V         L +    T
Sbjct: 564 PDPDEARTAMETMLSHLQR--HTFRLSTNYRNSAEIYAFAGEVIRQQIPDADLPDAVRRT 621

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS 354
                 R+   G V       +    +               P   +  +LA      I+
Sbjct: 622 GVKPELRVFDAGKVAEAAGDAAGELLELVEGTVGVIVPPKLRPGVDA--VLAELDNPRIA 679

Query: 355 NM 356
            +
Sbjct: 680 AL 681


>gi|171742278|ref|ZP_02918085.1| hypothetical protein BIFDEN_01384 [Bifidobacterium dentium ATCC
           27678]
 gi|171277892|gb|EDT45553.1| hypothetical protein BIFDEN_01384 [Bifidobacterium dentium ATCC
           27678]
          Length = 1354

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 104/358 (29%), Gaps = 70/358 (19%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC----VL 147
             P+L++ L           +        +       LA  L A Y+EA +        L
Sbjct: 166 AKPELEDGLIARAASKDGTLNER-----HERMRTQWRLAFALRAEYDEAIRAAYPGEYRL 220

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           D   L+++    + + ++              +++D+ QD +L  ++++ +L        
Sbjct: 221 DASQLMVDAAATVTQAEIEDLP--------KLLIVDDFQDATLAGFDMLAAL-------- 264

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS---- 263
                   L  VG+  +S+ +F G+ P+ +           +  G +   I++  +    
Sbjct: 265 --RGRGVRLLLVGNPDESVQTFRGSYPEYL------FNAAQSRLGARLERIDVTETEQRK 316

Query: 264 --FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             +R                  A  +S    +T     +   + G +      +      
Sbjct: 317 PAYR---------------TLAASRVSLSIASTEPTDEALPSRPGKMPALPGSLPIETVP 361

Query: 322 CNPQQESWTSYFDSLPQESSASILARR--IAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                +  +    S+      S +     + + I              +      D+ V+
Sbjct: 362 TGVSVDGISPDDGSIGTAMYRSAVEELDDVVWRIKT---------EHLQHSRDWNDMAVI 412

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLS 436
                         R       + V  +     L D   ++ L AL      ++  ++
Sbjct: 413 AHDNDTVRTFGERLRAD----GVPVRYSSVTRPLKDEPFVQGLFALIELAGLKKQTIA 466



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/365 (10%), Positives = 93/365 (25%), Gaps = 50/365 (13%)

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              I            R  N+ +D      ++   +E     +   + + +EQ       A
Sbjct: 675  ARIWQRVSLENSAAGRAANDRLDAAMRLFSYASGDESGGVLAAHTIGAFIEQVRALTIEA 734

Query: 565  HS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             S          V + T   A G    +VFL       + +   +          D    
Sbjct: 735  DSLAHTAPIDQAVTLTTPAGAAGRHWNLVFLPALQQGQWPNLAPRNTLFGGESLAD---V 791

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN------- 672
            +   + +      +        +      +   V +TRA ++ ++    N  N       
Sbjct: 792  MLHGELRDDIVTSAGRQDAQLAAVLASEQKSFLVALTRADERAVLSAVLNDDNVPSDFLY 851

Query: 673  ----------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
                           ++  Y +V  +   +      +   +  +         +   ++ 
Sbjct: 852  GYLPERFDRERDADPEQRDYALVGGTGEFNGLDADPRGLVAAARSVLADEPAGSSKAKDA 911

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI---------LNPSTIDTKGKTNLESL 773
                     + +         F+      +             L+PS +D      +  +
Sbjct: 912  AAALALLASRGIAAADPAYWPFAKQSETDDSESRDSHRSDVVTLSPSAVDRLWACPVCWM 971

Query: 774  LSDNQT--------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
            L +            N G +IHK+ Q          +N        +  L   +  +N+ 
Sbjct: 972  LENRFAGPRMGSVATNFGSLIHKVAQKATEAGLDLPQN--------HTALNDEENIENIT 1023

Query: 826  LSITR 830
              +  
Sbjct: 1024 QWMMA 1028



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 862  IIISGRIDQISI-----SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
            I +SGRID++         + + + +YKT   +  +          QL+ Y+  L   +P
Sbjct: 1146 IRLSGRIDRLERRVLSGGGEQVRLIDYKTGKQLSGQDMFSD----LQLACYQLGLA--FP 1199

Query: 917  NKSLVCL 923
             +     
Sbjct: 1200 EEGPRGA 1206


>gi|300768582|ref|ZP_07078481.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ATCC
            14917]
 gi|300493889|gb|EFK29058.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ATCC
            14917]
          Length = 1201

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 70/749 (9%), Positives = 175/749 (23%), Gaps = 158/749 (21%)

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G V L +    Q  +    ++    +    L +  S      ++   I  M+      
Sbjct: 287  APGLVALDDFWRGQPQAATGYEE---PNTNVHLFRTDSRQTELAQVGRMIRAMVAKKHAD 343

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      +D L++ R          +     ++ +I    + +  + DH  ++ + A
Sbjct: 344  PADDYH---YRDFLIMTR---HLDAYQTMLAPTFHELEIPYFVDLQRSMADHPLVELINA 397

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            L      Q      + +LK+ L   + +          +   + E     +     ++  
Sbjct: 398  LFDIDAQQYQYRDVMRVLKTELLMPNINGQPMDRQAYRQAVDLTENFILKSGYHGQRWVQ 457

Query: 484  VIKY--------------------------------------IHELIHIAQFCSPHDFFT 505
               +                                        ++       +      
Sbjct: 458  REDWQYFQLTEGDAGVETDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLV 517

Query: 506  LILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
              L ++    Q ++               E       F            +   E+   L
Sbjct: 518  NFLTSQGVTDQLLAWRDQALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFL 577

Query: 555  EQYPP----TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                            +  ++V I      +  +  VVF+V     V   + +    +  
Sbjct: 578  ALLQAGFEGASYSQIPSTLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSD 637

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
               ++    +         N  + +          + + L Y+    A   L        
Sbjct: 638  VDKENLQPTLSSLDGDHYLNDSAVV-------QLGDESCLNYLAFLSARRHLFFSAPLKD 690

Query: 671  SNEKKSNQRTWYDMVYDSF--------HNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
              E   N   +   +   F           +            K   I++    +    T
Sbjct: 691  DQETDLNWSNYVRRIQRQFNLREHTYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLT 750

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDI----------------NEPYILNPSTIDTKG 766
                   +   +    +   L   +  D                 N+P  L P++++   
Sbjct: 751  TNTDRNRVGAPLQPAPVWVWLRQQLTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALY 810

Query: 767  KTN--------------------------LESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                                          E  + +    + G   H +L  +       
Sbjct: 811  GHQIYTSISKLEEFYRNQYAYFLKYGLKLRERDVFELSAASTGEFFHAVLDGLIKALRSD 870

Query: 801  RKNFITSYCTKNAKLWPAKEY---------------------KNLLLSITRLLENPMMTT 839
            +     +   +  +                            + L+ ++ ++       +
Sbjct: 871  QIPLAQASDQQLGQYLETVTRQILDQPQFTILTSSNRMAYLQRQLINTVRQIAFAIRNQS 930

Query: 840  AMSCDS--YSEVSV-----SGKINCPK------KDIIISGRIDQIS---ISQQNIF-IFE 882
             +S      +EV          +            + + G+ID++    ++ Q+   I +
Sbjct: 931  KLSAAEPKQTEVLFGNVGKEHGLKALDFQIDATHSVHVRGKIDRLDQIQVADQSYLGIVD 990

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            YK+  H     E        Q+  Y   +
Sbjct: 991  YKSSQHKFDFQEAYY-GLAMQMLTYLDAV 1018


>gi|219851291|ref|YP_002465723.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
 gi|219545550|gb|ACL16000.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c]
          Length = 93

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 5/88 (5%)

Query: 844 DSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIA 902
            S+ EV     +        ++G ID++      ++ + +YK+    P            
Sbjct: 6   RSFCEVLFVVTLAS---GKRVAGTIDRLCELADGLWAVIDYKSDPVTPAVYASKAEEDGL 62

Query: 903 QLSIYEKILKDSYPNKSLVCLLIYVSEP 930
            L +Y +          +   L +    
Sbjct: 63  SLLVYCEAAGQLV-GLEVAGWLYFTEMG 89


>gi|270294229|ref|ZP_06200431.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275696|gb|EFA21556.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 686

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 32/140 (22%)

Query: 140 AKKKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             +K   L++ DL  +   +  L+      +        + H+LIDE+QD S IQ++VI+
Sbjct: 435 KMRKGHTLEYSDLAPLAYLHLALEGNGNQPF-------RVKHLLIDEMQDYSPIQYKVIQ 487

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L             P     +GD  QS+  +  +  +               +     I
Sbjct: 488 KLF------------PCRKTVLGDAGQSVNPYGSSTAET-----------IQKSLTASEI 524

Query: 258 IELPLSFRSTADILTVVDKV 277
           ++L  S+RST +I     K+
Sbjct: 525 MKLCKSYRSTFEITDFAQKI 544


>gi|160890181|ref|ZP_02071184.1| hypothetical protein BACUNI_02621 [Bacteroides uniformis ATCC 8492]
 gi|317481445|ref|ZP_07940511.1| hypothetical protein HMPREF1007_03630 [Bacteroides sp. 4_1_36]
 gi|156860569|gb|EDO54000.1| hypothetical protein BACUNI_02621 [Bacteroides uniformis ATCC 8492]
 gi|316902355|gb|EFV24243.1| hypothetical protein HMPREF1007_03630 [Bacteroides sp. 4_1_36]
          Length = 686

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 32/140 (22%)

Query: 140 AKKKNCVLDFEDL--IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
             +K   L++ DL  +   +  L+      +        + H+LIDE+QD S IQ++VI+
Sbjct: 435 KMRKGHTLEYSDLAPLAYLHLALEGNGNQPF-------RVKHLLIDEMQDYSPIQYKVIQ 487

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
            L             P     +GD  QS+  +  +  +               +     I
Sbjct: 488 KLF------------PCRKTVLGDAGQSVNPYGSSTAET-----------IQKSLTASEI 524

Query: 258 IELPLSFRSTADILTVVDKV 277
           ++L  S+RST +I     K+
Sbjct: 525 MKLCKSYRSTFEITDFAQKI 544


>gi|145481319|ref|XP_001426682.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393758|emb|CAK59284.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2250

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 22/156 (14%)

Query: 137 YEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEI-NHILIDEVQDTSLIQWEV 195
           YE+ K K    D  DLI               +    + E  ++I++DE+QD       +
Sbjct: 638 YEKLKSKYGYYDILDLI--------NHINFQQVYCHDNIEYMHYIILDELQDVPKALLIL 689

Query: 196 IRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP-KRVLREKRINQKRATNAGQK 254
           +  +T+              LF  GD  Q+I    G +    V   ++    +++    +
Sbjct: 690 LNRMTQ------------VQLFLAGDNAQNIVKGVGIKFQDIVNCLEKEISLKSSINLPQ 737

Query: 255 FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED 290
            S+I+L  +FRST  IL + + + +  E       D
Sbjct: 738 TSLIQLSYNFRSTNQILQLGNTIVNALELFFPKYLD 773


>gi|94990158|ref|YP_598258.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10270]
 gi|251764620|sp|Q1JHM2|ADDB_STRPD RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|94543666|gb|ABF33714.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10270]
          Length = 1071

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 74/653 (11%), Positives = 171/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLVDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLKKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVPTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                      +I++ 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAMLEDIVRSTAPILQLNQNIQVIDQEKNFQLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ I +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGIVDYKSSANQF-DIGTFYNGLSPQLVTYLAALKQIAPH 922


>gi|213692135|ref|YP_002322721.1| hypothetical protein Blon_1255 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523596|gb|ACJ52343.1| hypothetical protein Blon_1255 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 554

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 47/195 (24%), Gaps = 36/195 (18%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSD--NQTFNRGL------IIHKLLQVI---FT 795
            +  +  P   + S +D                +    G       I+H  L++      
Sbjct: 16  ARASLPRPGRASFSMLDKWMSCPARWAAEKLMPKPRLWGSPLVLGGIVHAALELACATPD 75

Query: 796 LPEHKRKNFITSYCTKNAKLW-------------------PAKEYKNLLLSITRLLENPM 836
           +     +             W                         + + +    L   +
Sbjct: 76  VVAPDWRALCAKGVGVEYGRWRMRGWGDEPIPSGVAMPDGSPAMQDDWVAAAALKLSGFV 135

Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
           +T A+        ++   +      I + G +D          + ++KT           
Sbjct: 136 LTDALGR-VLEPAALEQDLEADVDGIPLRGAVD--YRDVDG-TVVDWKTGGTPKYRDAR- 190

Query: 897 PYTHIAQLSIYEKIL 911
              H  QL +Y  +L
Sbjct: 191 -RRHADQLRLYRLML 204


>gi|321312895|ref|YP_004205182.1| DNA 3'-5' helicase IV [Bacillus subtilis BSn5]
 gi|320019169|gb|ADV94155.1| DNA 3'-5' helicase IV [Bacillus subtilis BSn5]
          Length = 774

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 22/121 (18%)

Query: 176 EINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS-FHGAEP 234
           +I H+ IDE QD S  Q   +RS+               ++  +GD  QSIY+     + 
Sbjct: 539 KIKHLFIDEAQDYSPFQMAYMRSIF-----------PAASMTVLGDINQSIYAHTIHGDQ 587

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
           +     +                + L  ++RST  I+     +     + +  +      
Sbjct: 588 RMDACFEDD----------PAEYVRLKRTYRSTRQIVEFTKAMLQDGADIEPFNRSGEMP 637

Query: 295 I 295
           +
Sbjct: 638 L 638


>gi|94992154|ref|YP_600253.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS2096]
 gi|251764618|sp|Q1JCJ9|ADDB_STRPB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|94545662|gb|ABF35709.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS2096]
          Length = 1071

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 74/653 (11%), Positives = 172/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLIDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLEKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVPTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                +     +I++ 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIKVIDQEKNFHLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ I +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGIVDYKSSANQF-DIGTFYNGLSPQLVTYLAALKQIAPH 922


>gi|34540333|ref|NP_904812.1| hypothetical protein PG0517 [Porphyromonas gingivalis W83]
 gi|34396645|gb|AAQ65711.1| hypothetical protein PG_0517 [Porphyromonas gingivalis W83]
          Length = 960

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 63/609 (10%), Positives = 160/609 (26%), Gaps = 63/609 (10%)

Query: 316 SQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKD 375
              ++      E   +    + + +S  + A+ +   I  +         G +  I   D
Sbjct: 243 ESSENGQTSSLEDKPAPDIRIIRTASEIVQAKLLPQLIEELYPEGYSDKEGIETAIILPD 302

Query: 376 ----ILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR--FIL 429
               + VL    +    I     +  +   IS+       +   + +   +   R   +L
Sbjct: 303 TGMLMPVLNSLAETVGRINVTMGYPLSQSAISIFVEKWIRVQAEIRLIQKVPHFRTDAVL 362

Query: 430 SQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH 489
              + +    +L     +   +          E     + +           Q ++  + 
Sbjct: 363 DLLNSVLLTPLLTDHSRDLLSNREVTKQYYVPEERLWGDELTDLLFSRPDSGQQLLDRLF 422

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE-QNSYSSLQ 548
            L+                   +              ++L+             S  S  
Sbjct: 423 LLLEKIAESMLFQPADSEYDQSEETNNMELEQIYHYRNMLNRLRGLVESYAMDMSVRSAA 482

Query: 549 ELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHI 608
            L+  L                 ++IM +   + L+   + ++         +  +   I
Sbjct: 483 LLLQGL--VSGVSIPFEGEPLVGLQIMGIDQTRSLDFKHLIILSVNEGKLPSRVYETTMI 540

Query: 609 MPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHS 668
             +L    G+P+      +++          +   + E   +LY                
Sbjct: 541 PYTLRRGYGLPVNEVNEATQS------YDFFRLIQRAESVTMLYDA-------------- 580

Query: 669 NTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYE-WSTHHPENTPLERE 727
            +       +  +   ++  F    +V+++ LT S+     I                  
Sbjct: 581 RSDQLGGGEESRYIRQMHFLFDMPLKVQELHLTGSLPHSPAICVRKEGEVLTRLHRFLEC 640

Query: 728 ETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
           +  + L  E+++     S I   +  P       +    + N    L      + G ++H
Sbjct: 641 DNEESLDPEERLSALSASSINTYVACPLRFYFENVRGIREENASDEL--MAANDFGTVVH 698

Query: 788 KLLQVIFT---LPEHKRKNFITSYCTKNAKLWPAKEYKNLLLS----------------- 827
           + +++I+           + ++ +             +                      
Sbjct: 699 RSMELIYKPCCGGGIVSSDILSRWLDPKNATIARIVRQAYTEEYLRSANTQGALSGLNHL 758

Query: 828 --------ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK-DIIISGRIDQISISQQN- 877
                   + R+LE+            SE  V G  +      + + G ID+I    +  
Sbjct: 759 YCIMIEKYVRRILEHDKSLAPFRYID-SERRVKGSFSLSNGSRVRLHGIIDRIDELNEEC 817

Query: 878 IFIFEYKTH 886
             I +YK+ 
Sbjct: 818 RRIVDYKSG 826


>gi|320326191|gb|EFW82246.1| hypothetical protein PsgB076_02895 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 485

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++                 T   VGD  Q +Y F GA
Sbjct: 187 LSQRFGAILLDEGQDVNPVIANLVQI-------------QKITQVTVGDRHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    R  +K             L  SFR    +  V + + S       L     
Sbjct: 234 VDALNSPAMRDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            T+  R+          L   V    ++ 
Sbjct: 283 PTLVKRALPDDLPHRTYLHRTVSGVIENA 311


>gi|282881952|ref|ZP_06290597.1| hypothetical protein HMPREF0628_0117 [Peptoniphilus lacrimalis
           315-B]
 gi|281298227|gb|EFA90678.1| hypothetical protein HMPREF0628_0117 [Peptoniphilus lacrimalis
           315-B]
          Length = 858

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 22/158 (13%)

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSY--------------CTKNAKLWPAKEYKNLLLSI 828
           G I HK+L+  F   +   ++++ +                + + K    K++  LL  +
Sbjct: 643 GSIYHKILENYFKNRKVYDEDYLKNLIMKETFPKCSKVEDLSFSEKFKFIKDFSYLLDIV 702

Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
               +   +                + +     I + G ID+I        + +YK+ + 
Sbjct: 703 RADTDANRINKDFIPKL-----FEQRFSFDIGPINLVGSIDRIDAKDDEEILIDYKSSNS 757

Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             +    +      Q  IY   L     +K +     Y
Sbjct: 758 STRTASDVFNNKSFQSVIY--ALARKNKDKKI-AGFYY 792


>gi|289191864|ref|YP_003457805.1| hypothetical protein MFS40622_0374 [Methanocaldococcus sp.
           FS406-22]
 gi|288938314|gb|ADC69069.1| conserved hypothetical protein [Methanocaldococcus sp. FS406-22]
          Length = 317

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 56/175 (32%), Gaps = 34/175 (19%)

Query: 782 RGLIIHKLLQVIF-----------TLPEHKRKNFITSYCTKNAKLWPAKEYKNLLL---- 826
            G +IH++L  +                   ++    +      L  +K  + +      
Sbjct: 58  YGTVIHQVLDKLHMHYKGLLDPSTEGSIPTDQDVERYFLEVENSLLASKGIRAITENVRN 117

Query: 827 SITRLLENPMMTTAMSCDSYSEVS-VSGKINCPKKDIIISGRIDQIS-----------IS 874
           S  ++L+            Y  V     +    +   I+SGR+D +              
Sbjct: 118 SALKVLQ--RFNRLEGPTLYPLVEDTECEFQSDRGSYILSGRVDVLRDISTMGKVPKGYD 175

Query: 875 QQNIFIFEYK-THHHVPQEIE--HIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            + I+  +YK TH+              +  Q+ +Y ++ K+ Y    L  ++ +
Sbjct: 176 AKEIW--DYKGTHYPDTSTKSGREKLKRYRFQMLVYAELYKEKYGLYPLKGVIYF 228


>gi|213583156|ref|ZP_03364982.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 190

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 65/211 (30%), Gaps = 39/211 (18%)

Query: 523 NEVIDVLDEFLNFTLRN----EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVH 578
              +  +++  ++        E +   +L ++++         +       ++V++MT+H
Sbjct: 15  EMRMKNVNQLFSWMTEMLEGNELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLH 74

Query: 579 TAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKH 638
            +KGLE   V++V        H+                                     
Sbjct: 75  ASKGLEFLYVYMVGMEEGFLPHQSSID--------------------------------- 101

Query: 639 LKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKI 698
             +   EE  RL YVG+TRA  +L            +  +      + +   +D   ++ 
Sbjct: 102 --EDNIEEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQE 159

Query: 699 KLTNSINKDEWIAYEWSTHHPENTPLEREET 729
           +   S  +          +       +R ++
Sbjct: 160 RKVVSAEERMQKGQSHLANLKAMMAAKRAKS 190


>gi|308070342|ref|YP_003871947.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
 gi|305859621|gb|ADM71409.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681]
          Length = 713

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 19/106 (17%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q  +H++IDE QD S     ++                  +   +GD  Q I+ + G   
Sbjct: 478 QRFDHVVIDEAQDFSPFHIALLDLFV-----------KGHSFTILGDLSQGIHEYRG--V 524

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
           +       +     T          L  S+RST +I+   + +   
Sbjct: 525 RAWEEMSSLFAPEQTGY------FALTRSYRSTLEIIEFANTILEQ 564


>gi|325295695|ref|YP_004282209.1| hypothetical protein Dester_1523 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066143|gb|ADY74150.1| hypothetical protein Dester_1523 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 306

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 20/160 (12%)

Query: 782 RGLIIHKLL--QVIFTL---------PEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITR 830
            G IIH+ L    +F L            +    I             K+ K   + + +
Sbjct: 70  YGSIIHRFLKRAHLFFLKTGRVVNDEEIERIFYLIEKSMEAEGVKATNKKVKESAIKVLQ 129

Query: 831 LLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVP 890
              +            +E+ +  ++     + I+ G ID +    + I I++YK     P
Sbjct: 130 KFCSIEGEEFFKSIIEAELRLIKEL----DNFILYGIIDVLRTEGEKIEIWDYK-GMEKP 184

Query: 891 QE----IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
            E           +  Q+ +Y  + K+         +L +
Sbjct: 185 DETTPYGREKLNRYKKQMYVYGFLSKEKTGTFPDKAVLYF 224


>gi|283456615|ref|YP_003361179.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1]
 gi|283103249|gb|ADB10355.1| ATP-dependent DNA helicase, UvrD/REP family [Bifidobacterium
           dentium Bd1]
          Length = 1353

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 104/358 (29%), Gaps = 70/358 (19%)

Query: 92  KSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNC----VL 147
             P+L++ L           +        +       LA  L A Y+EA +        L
Sbjct: 165 AKPELEDGLIARAASKDGTLNER-----HERMRTQWRLAFALRAEYDEAIRAAYPGEYRL 219

Query: 148 DFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGK 207
           D   L+++    + + ++              +++D+ QD +L  ++++ +L        
Sbjct: 220 DASQLMVDAAATVTQAEIEDLP--------KLLIVDDFQDATLAGFDMLAAL-------- 263

Query: 208 NTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS---- 263
                   L  VG+  +S+ +F G+ P+ +           +  G +   I++  +    
Sbjct: 264 --RGRGVRLLLVGNPDESVQTFRGSYPEYL------FNAAQSRLGARLERIDVTETEQRK 315

Query: 264 --FRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
             +R                  A  +S    +T     +   + G +      +      
Sbjct: 316 PAYR---------------TLAASRVSLSIASTEPTDEALPSRPGKMPALPGSLPIETVP 360

Query: 322 CNPQQESWTSYFDSLPQESSASILARR--IAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
                +  +    S+      S +     + + I              +      D+ V+
Sbjct: 361 TGVSVDGISPDDGSIGTAMYRSAVEELDDVVWRIKT---------EHLQHSRDWNDMAVI 411

Query: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFI-LTDHLAIKDLMALGRFILSQEDDLS 436
                         R       + V  +     L D   ++ L AL      ++  ++
Sbjct: 412 AHDNDTVRTFGERLRAD----GVPVRYSSVTRPLKDEPFVQGLFALIELAGLKKQTIA 465



 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/365 (10%), Positives = 93/365 (25%), Gaps = 50/365 (13%)

Query: 505  TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA 564
              I            R  N+ +D      ++   +E     +   + + +EQ       A
Sbjct: 674  ARIWQRVSLENSAAGRAANDRLDAAMRLFSYASGDESGGVLAAHTIGAFIEQVRALTIEA 733

Query: 565  HS-----ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIP 619
             S          V + T   A G    +VFL       + +   +          D    
Sbjct: 734  DSLAHTAPIDQAVTLTTPAGAAGRHWNLVFLPALQQGQWPNLAPRNTLFGGESLAD---V 790

Query: 620  IWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN------- 672
            +   + +      +        +      +   V +TRA ++ ++    N  N       
Sbjct: 791  MLHGELRDDIVTSAGRQDAQLAAVLASEQKSFLVALTRADERAVLSAVLNDDNVPSDFLY 850

Query: 673  ----------EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
                           ++  Y +V  +   +      +   +  +         +   ++ 
Sbjct: 851  GYLPERFDRERDADPEQRDYALVGGTGEFNGLDADPRGLVAAARSVLADEPAGSSKAKDA 910

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYI---------LNPSTIDTKGKTNLESL 773
                     + +         F+      +             L+PS +D      +  +
Sbjct: 911  AAALALLASRGIAAADPAYWPFAKQSETDDSESRDSHRSDVVTLSPSAVDRLWACPVCWM 970

Query: 774  LSDNQT--------FNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
            L +            N G +IHK+ Q          +N        +  L   +  +N+ 
Sbjct: 971  LENRFAGPRMGSVATNFGSLIHKVAQKATEAGLDLPQN--------HTALNDEENIENIT 1022

Query: 826  LSITR 830
              +  
Sbjct: 1023 QWMMA 1027



 Score = 40.3 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 862  IIISGRIDQISI-----SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYP 916
            I +SGRID++         + + + +YKT   +  +          QL+ Y+  L   +P
Sbjct: 1145 IRLSGRIDRLERRVLSGGGEQVRLIDYKTGKQLSGQDMFSD----LQLACYQLGLA--FP 1198

Query: 917  NKSLVCL 923
             +     
Sbjct: 1199 EEGPRGA 1205


>gi|192362132|ref|YP_001984180.1| UvrD/REP helicase [Cellvibrio japonicus Ueda107]
 gi|190688297|gb|ACE85975.1| UvrD/REP helicase [Cellvibrio japonicus Ueda107]
          Length = 705

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 138/520 (26%), Gaps = 83/520 (15%)

Query: 150 EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNT 209
           + L+  +  L  K  +   +   +  +  +  +DE QD++     +I+ L    F     
Sbjct: 238 DTLLEYSQTLFDKYPMLCRL---VIDKYPYFFVDEYQDSNEKVINIIKQL----FTASVE 290

Query: 210 HSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTAD 269
                 +   GD  Q+IY                  ++ T    +   I    + RS   
Sbjct: 291 IKKSWLVGYFGDTAQNIYDDG-------------VGRKITKMHSQVLEINKIYNRRSHKK 337

Query: 270 ILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESW 329
           I+ + + +    E  Q    D               GTV+ +    S +  +      + 
Sbjct: 338 IIDIAN-MIRNDEIRQKPIFDERN-----------DGTVEFYYCATSINQEEIALSFLNK 385

Query: 330 TSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLI 389
                   +             T+   I    + +     +    DI   V   K     
Sbjct: 386 YRSDLLSDE------------KTLKKQIDCLVLTNKLMATLSGFGDIQSNVSNAKSIYWN 433

Query: 390 TFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF-ILSQEDDLSFVCMLKSPLFNF 448
                       I+       +   H  I  L  + +  I   E + ++  +  +     
Sbjct: 434 E-----------INTKLLSHDLEKLHPTIHLLYKVIKLQISLTEKNSTYKDIFGTIKGGI 482

Query: 449 SEDDIFKICTQRH--ETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTL 506
           S     +I       +  T+ ++I + +    +         + L +++           
Sbjct: 483 SFSRALQISEALKNIKANTLNDFIFELSKILTNSTFDATALENILQNLSVKLKDFK---- 538

Query: 507 ILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY--SSLQELISELEQYPPTIKRA 564
               +       S     ++   +  L+     E  S    +L +    +          
Sbjct: 539 --EEQDFYSYLKSEISVLMLGSENTSLDDADPEETKSLLNITLDQWHRWV------NFID 590

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            +    E+   T H  KG E   V ++            +       L  +    +    
Sbjct: 591 RNEKDKEIIYHTYHGTKGEEYENVAII-MEHSFGGGHEGRDKFKNYFLKLEEIKRVME-- 647

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
                   S+          E    L+YV  TRA   L I
Sbjct: 648 --------SEGKAVKTDDEFENTKNLIYVAYTRAIKNLKI 679


>gi|307708678|ref|ZP_07645141.1| ATP-dependent nuclease subunit B [Streptococcus mitis NCTC 12261]
 gi|307615252|gb|EFN94462.1| ATP-dependent nuclease subunit B [Streptococcus mitis NCTC 12261]
          Length = 1091

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 80/719 (11%), Positives = 180/719 (25%), Gaps = 102/719 (14%)

Query: 281 PENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQES 340
           P +   L + S   + H + +                   + +   ES   + +   +  
Sbjct: 230 PFSEGNLYQASVEFLHHLAFKYQTPAQDYSQTHEKMDSFDKASRLLESSYDFSELSLEID 289

Query: 341 SASILARRI-----AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                  +I           ++         +   +  K   +L+    D        + 
Sbjct: 290 DRDRENLQIWSCLTQKEELELVARSIRQKLHENSNLSYKHFRILL---GDVASYQLSLKT 346

Query: 396 LKNDYKISVVGNDRFILTDHL----------------AIKDLMALGRFILSQEDDLSFVC 439
           + + Y+I         +  H                   +DL+ L R  L  +   + + 
Sbjct: 347 IFDQYQIPFYLGRSESMAHHPLTQFVESILALKRYRFRQEDLINLLRTGLYTDLSQADID 406

Query: 440 MLKSPLFNFS-------EDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELI 492
             +  +           +    K    + +   +     +      + F    +    L+
Sbjct: 407 AFEQYIRYLGINGLPAFQQAFTKSHHGKFDLGRLNALRLRIVTPLETLFASRKQKAENLL 466

Query: 493 HIAQ-FCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELI 551
                F         +       +        EV       L         S  SL++ +
Sbjct: 467 QKWNVFLKEGAVTKQLQDLTATMKVLEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFL 526

Query: 552 SELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           + L      +  R   A  N V + +      L +  V+ +                +  
Sbjct: 527 ALLHSGMSLSQYRTIPATVNTVLVQSYDLIAPLTADFVYAIGLTQDNLPKIAQNTSLLTD 586

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                    +        ++    +   +  A  QLI+   S  
Sbjct: 587 EERQSLNQATEEG----------VQLLIASSENLKKNRYTMLSLVNSARKQLILSSPSLF 636

Query: 671 SNEKKSNQRTWYDMVYDSFHNDE--------RVKKIKLTNSINKDEWIAYEWSTHHPENT 722
           +  +        ++V   F   E          + I   +S+       ++         
Sbjct: 637 NESESKESAYLQELVSFGFSRREKRMSHKNLSKEDIGSYHSLLSSLVAYHQQGEMSETEQ 696

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLS------- 775
            L   + + ++M ++   + L +P          L   T+        E  LS       
Sbjct: 697 DLTFIKVLARVMGKKLDQQGLENPALPTSPSSKPLAKDTLQALYPAEQEFYLSTSGLTEF 756

Query: 776 ---------------------DNQTFNRGLIIHKLLQVIFTLPEHKRKN----------- 803
                                     + G  +H++ +    LP     +           
Sbjct: 757 YRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPNEDSFDKRLEQAIQETS 816

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITR----LLEN-PMMTTAMSCD--SYSEVSVSGKIN 856
               +     +   A+  K +LL + R    +L + P + T          E +      
Sbjct: 817 QEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEESNFGGKEQAFIQL-- 874

Query: 857 CPKKDIIISGRIDQISI--SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
              + + + G++D+I    +   I + +YK+     Q   H      +QL  Y   LK 
Sbjct: 875 DNGRSVFVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFP-HFFNGLNSQLPTYLAALKR 932


>gi|21910049|ref|NP_664317.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS315]
 gi|28896253|ref|NP_802603.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes SSI-1]
 gi|81759285|sp|Q8K816|ADDB_STRP3 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|21904240|gb|AAM79120.1| putative ATP-dependent exonuclease subunit B [Streptococcus
           pyogenes MGAS315]
 gi|28811504|dbj|BAC64436.1| putative ATP-dependent exonuclease, subunit B [Streptococcus
           pyogenes SSI-1]
          Length = 1071

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 75/653 (11%), Positives = 172/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLVDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLKKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVPTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKSLSKEVIEVCFPKRIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    I +       +   +     S   +                +     +I++ 
Sbjct: 811 NQESFFQQIYQDNAEAEYSLAILEDIVRSTAPILQLNQNIQVIDQEKNFHLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ I +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGIVDYKSSANQF-DIGTFYNGLSPQLVTYLAALKQITPH 922


>gi|238762724|ref|ZP_04623693.1| hypothetical protein ykris0001_9000 [Yersinia kristensenii ATCC
           33638]
 gi|238699029|gb|EEP91777.1| hypothetical protein ykris0001_9000 [Yersinia kristensenii ATCC
           33638]
          Length = 603

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 56/405 (13%), Positives = 117/405 (28%), Gaps = 39/405 (9%)

Query: 95  DLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKN---------- 144
           D++E L   ++  +         K    T A       +    E  +             
Sbjct: 72  DIREALIALKEAQLARDTAEAEAKPRGITPAKQRALDEIIDEIEILRATEVFIYHPDRNT 131

Query: 145 ---CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
                L    ++  T  LL+ +     I   +      ILIDE QDT     + +  L E
Sbjct: 132 YGPGALPHNYVLDATAWLLRNKPTLQSI---LKDRHPIILIDESQDTMKGVLDSLMLLAE 188

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                        TL  +GD +Q IY+   A+               +   + ++  EL 
Sbjct: 189 K-------RERDLTLGLLGDHRQRIYTDGHAD-------------LPSIVPENWATPELQ 228

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
           ++ RS   I+T+++K++   E         T             GTV+L+    S+    
Sbjct: 229 MNHRSQRRIVTLINKIW---ETELEGRTQPTKGSAQHPRTEKAGGTVRLFLGDTSRSPED 285

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
               +         +   +  +    ++      ++ T   F +  + ++          
Sbjct: 286 KVLSERWCAERMFEISGLADWNQGQYQLLALEHKLVATRGSFLDVYEAMVLLDPHAAAPS 345

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
              D    + +   L     +    ++  IL + +A +     GR     +D  +     
Sbjct: 346 GSGDNKGPSSVQTLLNELAHLEACISNDGILNEFMATEVFRRYGRLDNIPQDYEARAART 405

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
              L   +         +    + +   +         + Q    
Sbjct: 406 DEILKAVNIFAAACAQPESTVADVLAPVLCASLFEIDHRLQEAYA 450


>gi|213023122|ref|ZP_03337569.1| DNA helicase IV [Salmonella enterica subsp. enterica serovar Typhi
           str. 404ty]
          Length = 136

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 16/97 (16%)

Query: 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQ 186
           + L   L   ++ A K    +DF  LI     +L+K         +      HIL+DE Q
Sbjct: 56  IKLMAPLLKAWKSALKAENAVDFSGLIHQAMVILEK--------GRFISPWKHILVDEFQ 107

Query: 187 DTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223
           D S  +  ++ +L +         +S  TLFAVGD+ 
Sbjct: 108 DISPQRAALLEALRK--------QNSQTTLFAVGDDW 136


>gi|167585151|ref|ZP_02377539.1| putative DNA helicase [Burkholderia ubonensis Bu]
          Length = 692

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 34/242 (14%)

Query: 37  LSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDL 96
           L+      ++      L  A   + I      +SS    +      + +    +    + 
Sbjct: 305 LAERLDVVSMDTVGVKLYSAEFGKPIFASREEISSLL--KSAAKNVDGLKANTSFLLSEW 362

Query: 97  KEKLKKSQ-DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
            + +   Q + +   RD     +  +   A   L   + A   E  ++   +   ++   
Sbjct: 363 DDVVDTWQVENWEAYRDAKRLGRKTRLPEAQRALYWQVFAKVREQLRQAGKVTKAEMFDK 422

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
               L           +     ++I++DE QD  + Q   + S+  D   G         
Sbjct: 423 LVGAL---------LKRKYPVFDYIVVDEAQDIGVQQLRFLASIAGDRPNG--------- 464

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           LF  GD  Q I              ++    +      +     L +++R++  I +  D
Sbjct: 465 LFFAGDLGQRI-------------FQQPFSWKLLGVDIRGRSRTLNINYRTSHQIRSQAD 511

Query: 276 KV 277
            +
Sbjct: 512 LL 513



 Score = 42.6 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 27/117 (23%)

Query: 556 QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
                + +        V + T+H AKG+E  VV ++    ++   +    +         
Sbjct: 594 LIARVLGKDMVTEEGYVSLTTMHLAKGMEFRVVAVMACDDEIIPSQARIDL--------- 644

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                                            +LLYV  TRA DQL +      S 
Sbjct: 645 ------------------ASDDAELTEIYNTERQLLYVACTRARDQLHVSAVKPGSE 683


>gi|330878708|gb|EGH12857.1| hypothetical protein PSYMP_22543 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 487

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 46/149 (30%), Gaps = 24/149 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++  T              T   VGD  Q +Y F GA
Sbjct: 187 LSQRFGAILLDEGQDVNPVIANLVQIQT-------------ITQVTVGDRHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    R  +K             L  SFR    +  V + + S       L     
Sbjct: 234 VDALNSPAMRDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            T+  R+          L   V    ++ 
Sbjct: 283 PTLVKRALPDDLPHRTYLHRTVSGVIENA 311


>gi|94988279|ref|YP_596380.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS9429]
 gi|251764619|sp|Q1JMH6|ADDB_STRPC RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|94541787|gb|ABF31836.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS9429]
          Length = 1071

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 74/653 (11%), Positives = 172/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLIDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLEKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVPTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                +     +I++ 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIKVIDQEKNFHLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ I +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGIVDYKSSANQF-DIGTFYNGLSPQLVTYLAALKQIAPH 922


>gi|301065091|ref|ZP_07205433.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300440812|gb|EFK05235.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 289

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 49/182 (26%), Gaps = 46/182 (25%)

Query: 779 TFNRGLIIH----KLLQVIFTLPEHKRKNFITSYC--------------TKNAKLWPAKE 820
               G I+H     LL+ +   P    +     Y                       + +
Sbjct: 54  PLEVGNIVHDVNKTLLERLKLTPRAIDEARFYDYALKMTRKYVQAKTFQEFYYGRTKSVD 113

Query: 821 YKNLLLSI----TRLLENPMMTTAMSCD--SYSEVSVSGKINCPKKDIIISG-----RID 869
              +   +      LL +  +T  M C      E  +         +  I G     ++D
Sbjct: 114 VGEVFEKVRISLENLLNSNRLTWLMDCAIPQKDEWLIE---PPGYGETRIGGMKAYCKVD 170

Query: 870 QISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNK------SLVCL 923
            +      IFI ++KT    P+        H  Q+  Y       +  K       +V  
Sbjct: 171 FLFPVNDRIFIMDWKTGKPDPK-------KHRRQMVGYA-AWAAYHFEKDSAAISPIVAY 222

Query: 924 LI 925
           L 
Sbjct: 223 LH 224


>gi|302544962|ref|ZP_07297304.1| I DNA or RNA helicase [Streptomyces hygroscopicus ATCC 53653]
 gi|302462580|gb|EFL25673.1| I DNA or RNA helicase [Streptomyces himastatinicus ATCC 53653]
          Length = 826

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/348 (11%), Positives = 87/348 (25%), Gaps = 47/348 (13%)

Query: 18  KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQK 77
             LW          +  ++     G    +               +  +  L+   +   
Sbjct: 448 DALWARSGGPRRYTDPELAAEAREGFDEDISGEDAFADFL-----DAWWPELTPRSVLAA 502

Query: 78  FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
              +K +        +P     + +S            +           T+        
Sbjct: 503 MADEKRLGRWSRRVLNPREARLVARSLARLGPDGQGPLSVHDVALLDELHTVLGP----- 557

Query: 138 EEAKKKNCVLDFEDLIINTNDL--LKKRDVSAWIR----YKIDQEINHILIDEVQDTSLI 191
                K   +D  D +    +L     R      R     +   +  HI++DE QD + +
Sbjct: 558 PARPAKTREVDPLDQLTGLEELTTFADRSAPRRGRADRAEQERADYAHIIVDEAQDLTPM 617

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           QW ++                  T   VGD  QS      ++P    + +          
Sbjct: 618 QWRMV-----------GRRGRHATWTVVGDPAQS----SWSDPDEAAQARDE-----ALG 657

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
            +      L +++R+ A+I  +  KV ++                     +   G V  +
Sbjct: 658 TRPRRRFTLTVNYRNPAEIAELAAKVLALAM-----------PGAPSPRAVRSTGAVPRF 706

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGT 359
             +    D        +  +        +   ++A          +  
Sbjct: 707 APLPDGRDGDLAHHVRTEAARLLDEVDGTVGVVVAMGRREQARRWLAG 754


>gi|322388874|ref|ZP_08062466.1| DNA helicase [Streptococcus infantis ATCC 700779]
 gi|321140257|gb|EFX35770.1| DNA helicase [Streptococcus infantis ATCC 700779]
          Length = 640

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 68/538 (12%), Positives = 154/538 (28%), Gaps = 84/538 (15%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +  + +++    +         I   I    ++I +DE QDTS +  +++          
Sbjct: 150 ISHDHILLVAEKMFSTYPKLCDILIDIA---DYIFVDEYQDTSPLVVKIL-------LEY 199

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               +    +   GD  Q+IY     +       K                I    + R+
Sbjct: 200 IQNRTKKNIVGFFGDSMQAIYDSGVGDLSSYNLIK----------------IAKAQNRRN 243

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              ++ + +K           S+D+   + + S      G V+                Q
Sbjct: 244 PKKVIDLANKFRDDGLVQTPSSDDTAPNMDNGSI---IPGIVKFIYGNDINQLEILRGSQ 300

Query: 327 ESWTSYFDSLPQESSASILARRIAY-----TISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                 F++  +     +  +  A       +  +  TD           +  +  ++  
Sbjct: 301 LYRKLEFNAPSKTKELRLTHKLNAEMAGFSKLFELYNTDLFVKLITGIKKKINENKIVDN 360

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRF-ILSQEDDLSFVCM 440
            +    L+      +       ++ ++    ++  A  D +    F  +S +  ++   +
Sbjct: 361 GKSFKDLVEEA--QIVVRRGGPLIVDEIKSTSELSAFYDEIKTCSFEEVSSKSKINKESL 418

Query: 441 LKSPLFNFSEDDIFKICTQR--HETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
           L       S          R     + VYE ++ +     ++F  + K+  ++       
Sbjct: 419 LSYKFNGLSSRYEAGTDRDRILKRLDLVYELVKLYKTGKHNEFLRITKF--KITSSKDKI 476

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
           S  +  T I        + I     E      E ++     +    + ++     L    
Sbjct: 477 SLSNVMTEISADDITIGRVI-ELAEEC-----ELISK----DDLFTNFIKNRGHYLWSRL 526

Query: 559 PTIKRAHSANH-----NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLN 613
             +      N        V ++T H  KG E   V ++   +  ++  +   +       
Sbjct: 527 KIMPFQEYVNSIDYLREYVSVITQHKVKGSEYENVLVL-LDNGKWNQYNFDTLFG----- 580

Query: 614 DDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                      ++ Q    RL YV +TRA   LI+   SN  
Sbjct: 581 ----------------------KGSSNENVQNRTKRLFYVAITRAMKNLIVYMPSNDR 616


>gi|313205879|ref|YP_004045056.1| hypothetical protein Riean_0381 [Riemerella anatipestifer DSM
           15868]
 gi|312445195|gb|ADQ81550.1| hypothetical protein Riean_0381 [Riemerella anatipestifer DSM
           15868]
 gi|315022191|gb|EFT35219.1| hypothetical protein RAYM_05300 [Riemerella anatipestifer RA-YM]
          Length = 888

 Score = 58.4 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/504 (10%), Positives = 127/504 (25%), Gaps = 91/504 (18%)

Query: 490 ELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEF-------LNFTLRNE-Q 541
              +I +  S  +    IL A   + ++      +  + +  F        N     +  
Sbjct: 403 NFFNIFEKQSVKELLE-ILIAFCYQLKYKPIDDIQ-YENISYFEKSFKIVKNQLEPYQFD 460

Query: 542 NSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS-H 600
            S   L+ L++++               + +++M +   + L    + L+ T        
Sbjct: 461 VSIEDLEVLVNQMVSTESVDF--QGEPLSGLQVMGLLETRLLNFENIILLSTNEGKLPLG 518

Query: 601 KHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASD 660
                        +               +    L              LLY  ++    
Sbjct: 519 NSQNTYLPFDVRKNFGLNTFLENDGIYAYHFYRLLQDAHH-------IHLLYNALSS--- 568

Query: 661 QLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
                     +  +KS   T  +M          V+       +                
Sbjct: 569 --------GVNTGEKSRFITQIEMESPHQVQKIMVENESQPVEVLPMVV----------- 609

Query: 721 NTPLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTF 780
                      Q+M+  K  K   +           ++              +  +    
Sbjct: 610 -------SKTPQVMERLKEWKHNIAASHLTTYLYNPIDFYAKVVLKIKETSEIEEELSLR 662

Query: 781 NRGLIIHKLLQVIFT------LPEHKRKNFITSYCT-------------KNAKLWPAKEY 821
           N G ++H  L+ ++       L     +  IT                 +  +      +
Sbjct: 663 NYGNLVHYALEFLYDKLKGKILTPQDLEWAITQIDESVEFAIKTLKHQPEFYERGMNFVH 722

Query: 822 KNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINC------PKKDIIISGRIDQISISQ 875
           + +   +   +    +    S ++   + +  +I         + ++   G ID+I    
Sbjct: 723 QQMAKKVIGDILKLDLELVSSGNTLEILDLEKEIKDVKFKVSDELEVAFKGFIDRIDRLN 782

Query: 876 QNIFIFEYKTHHHV-------PQEIEHIPY----THIAQLSIYEKILKDS--YPNKSLVC 922
            N+ + +YKT            +  E +          QL IY   +     +  K + C
Sbjct: 783 GNLRVIDYKTAKTKNLRLKISDKNRETLLKNKDYKQALQLCIYAYAMGQLSEFLGKDISC 842

Query: 923 LLIYV----SEPKVFIIPQNKLNK 942
            +          ++  I  +  + 
Sbjct: 843 GIWSFAEVSRGVQMLEIDGDLSDA 866


>gi|167461095|ref|ZP_02326184.1| UvrD/REP helicase [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383497|ref|ZP_08057272.1| DNA 3'-5' helicase IV-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321152209|gb|EFX45040.1| DNA 3'-5' helicase IV-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 786

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 24/154 (15%)

Query: 157 NDLLKKRDVSAWIRYKIDQEI------NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTH 210
            +L  +         +  +         H+ IDE QD S  ++  ++ +           
Sbjct: 518 RELFYEDAAPYLFLKEQIEGFQTNNMIRHVFIDEAQDYSPFEFAFLKKMF---------- 567

Query: 211 SSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADI 270
                +  +GD  Q+IY FH            + +K      ++   + L  ++RST  I
Sbjct: 568 -PRSKMTVLGDMNQAIY-FHSGSNSGFSPLYSVFKK------EETESVILTRTYRSTKQI 619

Query: 271 LTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
           +     + +  EN    +         +++    
Sbjct: 620 VDFTRGMIAGGENIVPFNRQGPKPTVTQAADQAD 653


>gi|149012920|ref|ZP_01833833.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP19-BS75]
 gi|147763209|gb|EDK70149.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae
           SP19-BS75]
          Length = 218

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 128 TLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILI 182
            +       Y++  +++  +DF+DLI+ T  L  +      +     Q+  +I +
Sbjct: 166 QIVAQCYTTYQKELRQSESVDFDDLIMLTLRLFDQNPD---VLTYYQQKFQYIHV 217


>gi|320458252|dbj|BAJ68873.1| hypothetical protein BLIJ_1287 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 549

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 47/195 (24%), Gaps = 36/195 (18%)

Query: 747 IKNDINEPYILNPSTIDTKGKTNLESLLSD--NQTFNRGL------IIHKLLQVI---FT 795
            +  +  P   + S +D                +    G       I+H  L++      
Sbjct: 11  ARASLPRPGRASFSMLDKWMSCPARWAAEKLMPKPRLWGSPLVLGGIVHAALELACATPD 70

Query: 796 LPEHKRKNFITSYCTKNAKLW-------------------PAKEYKNLLLSITRLLENPM 836
           +     +             W                         + + +    L   +
Sbjct: 71  VVAPDWRALCAKGVGVEYGRWRMRGWGDEPIPSGVAMPDGSPAMQDDWVAAAALKLSGFV 130

Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHI 896
           +T A+        ++   +      I + G +D          + ++KT           
Sbjct: 131 LTDALGR-VLEPAALEQDLEADVDGIPLRGAVD--YRDVDG-TVVDWKTGGTPKYRDAR- 185

Query: 897 PYTHIAQLSIYEKIL 911
              H  QL +Y  +L
Sbjct: 186 -RRHADQLRLYRLML 199


>gi|297561678|ref|YP_003680652.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846126|gb|ADH68146.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 705

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 32/174 (18%)

Query: 103 SQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA---HYEEAKKKNCVLDFEDLIINTNDL 159
                    +     +  +    + T    +      ++     + +   E +      L
Sbjct: 376 LAQRVGSASEYLAAKRTGRGRGLAPTQKARVWQAVWEFQRELSAHGLWTHETVCEEAARL 435

Query: 160 LKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219
           L +R  +       D+   H+++DE QD    QW ++R+              P  LF  
Sbjct: 436 LAERPDT-------DRPFRHVVVDEAQDLGAHQWRLLRA---------AVPHGPDDLFVA 479

Query: 220 GDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
           GD  QSIY       +  +  +                 +L +++R+T +IL  
Sbjct: 480 GDTHQSIYGPGITLSEVGVNVR-------------GRSSKLRINYRTTGEILGW 520


>gi|18309122|ref|NP_561056.1| hypothetical protein CPE0140 [Clostridium perfringens str. 13]
 gi|168213345|ref|ZP_02638970.1| conserved hypothetical protein [Clostridium perfringens CPE str.
           F4969]
 gi|18143797|dbj|BAB79846.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170715111|gb|EDT27293.1| conserved hypothetical protein [Clostridium perfringens CPE str.
           F4969]
          Length = 589

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 21/186 (11%)

Query: 171 YKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFH 230
            K+ Q+ + ILIDE QD    +   I                 + +F  GD  QSIY+  
Sbjct: 324 EKVRQKYDAILIDEYQDF---RMNWIELCVNLCKDYYIDDKVVKNIFLAGDRLQSIYN-- 378

Query: 231 GAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ-GLSE 289
                      +    ++     +     L  S+RS    +++        +  +  + +
Sbjct: 379 ----------NKDISWKSIGIDMRGRSKLLKTSYRSAKQHMSLALDFLRNDKVLKDEVEK 428

Query: 290 DSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                   +       G+++      S+  ++    +       D L   ++      RI
Sbjct: 429 FYKDNSDDKELNALNNGSLEFITGDFSEITNKILELKNQGYENKDILILAAT-----ERI 483

Query: 350 AYTISN 355
              I  
Sbjct: 484 CKNIKE 489


>gi|328885698|emb|CCA58937.1| ATP-dependent DNA helicase UvrD or PcrA [Streptomyces venezuelae
           ATCC 10712]
          Length = 569

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 22/155 (14%)

Query: 143 KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED 202
           +     F+ L   T  LL++    A +R         +++DE QDT+  QW VI++++  
Sbjct: 131 EEGRYVFDLLAETTATLLERS---AALRALYSSIYPLVIVDEFQDTNTDQWRVIKAVSG- 186

Query: 203 FFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPL 262
                       T+  + D  Q I+       ++ L         A              
Sbjct: 187 ----------ASTVICLADPDQRIFDHLDGVEEQRLD-------DAVAHLAPTPFDLSKD 229

Query: 263 SFRST-ADILTVVDKVFSIPENAQGLSEDSTTTIR 296
           + RS    +L   + V +   +A+  +  + T   
Sbjct: 230 NHRSPGGGLLDYANAVLNNTLHAEPANVHTWTYTP 264


>gi|170116432|ref|XP_001889407.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164635692|gb|EDQ99996.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 452

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/392 (14%), Positives = 99/392 (25%), Gaps = 77/392 (19%)

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEV-QDTSLIQWEVIRSLTEDFFVGKNTHSSPR 214
             DLL ++     +  +      HI IDE  Q         I+S+           +   
Sbjct: 71  AADLLAQK--LTNLGRQARGHFTHIFIDEAGQGKEPEIMVPIKSIA----------NDET 118

Query: 215 TLFAVGDEKQ-------SIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRST 267
            +   GD KQ        +    G     + R          N G   +I++L  +FRS 
Sbjct: 119 NIILAGDNKQLGPVVHSQLAGNLGLRVSYLARIMDREIYDLKNGGSGVTIVKLVKNFRSH 178

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE 327
             IL   +  F   E         T ++ +      +   V     +        +P   
Sbjct: 179 PSILQFSNTHFYNSELQPCGDAALTRSLENYEELPRKKFPVIFHGIIGKDDREASSPSFF 238

Query: 328 SWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTP 387
           +                 A ++     ++I         +K  I+A+DI V+        
Sbjct: 239 NID--------------EATQVKKYCLSLISN-------RKNSIRAEDIGVITPYHAQRC 277

Query: 388 LITFLTRFLKNDYKISVVGNDRFILTDHLAIKD--------------------------- 420
            I  L R       I V   + F   +   I                             
Sbjct: 278 KILDLLRKDFRMQDIKVGSVEEFQGQERRIIIMSTVRSNTNYVTSDIKRSLGFVANARRL 337

Query: 421 ------LMALGRFILSQ---EDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQ 471
                   AL   I +      D  +  +L     N   +                 + +
Sbjct: 338 NVAITRAQALLIVIGNPIVLSLDPLWRELLNYIHINGGWEGKQLDWNPEEAVSAEARFAE 397

Query: 472 KFANCGISKFQHVIKYIHELIHIAQFCSPHDF 503
                   + +  I+ +  +I      S  + 
Sbjct: 398 DRRTNAEREAEETIQRLKAMIVQRHEDSDLEI 429


>gi|259415345|ref|ZP_05739266.1| UvrD/REP helicase [Silicibacter sp. TrichCH4B]
 gi|259348575|gb|EEW60337.1| UvrD/REP helicase [Silicibacter sp. TrichCH4B]
          Length = 473

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 72/504 (14%), Positives = 142/504 (28%), Gaps = 81/504 (16%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
              IL+DE QDTS    +V+R L + F            +   GD  QSIY     +   
Sbjct: 2   YPLILVDEYQDTSP---DVVRILLDHFRSS----GKSAVVGFFGDSMQSIYDKTVGDLND 54

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
            L   R               +    + R+   ++ V + V +        S++S   + 
Sbjct: 55  YLECGR------------VREVVKQQNRRNPQSVIDVANAVRNDGLTQLPSSDESAPNMA 102

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQE---SSASILARRIAYTI 353
               ++   G V+    + S  D+        W        +E   +      R    T+
Sbjct: 103 DGQVKM---GVVRFIYSMDSALDTDEVRNGLGWDFSDTQNTKELNLTHNLNAPRAGYPTL 159

Query: 354 SNMIGTDTIFSNGKK--RVIQAKDILVLVRKRKDTPLITFLT-RFLKNDYKISVVGNDRF 410
            ++   D I    ++  R ++ + I      +    ++  L          +   G  RF
Sbjct: 160 MDIYDKDKILDYKQRISRYVKTQGIETDFSGKTFGEVVDSLVGSAANKMQVLPTAGMQRF 219

Query: 411 ILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYI 470
                    D       +   +D   F  +  S      ++ +          E      
Sbjct: 220 --------IDENPELLALARAQDYEVFRKLFVS------KEQLIDDKKDSENEEGSTRST 265

Query: 471 QKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD 530
           +      +   Q ++ +++    +++F    D     L  K+     I++        + 
Sbjct: 266 RDDLIKHLFSIQSIL-FLYSRGEVSEFLKRTDLKVHSLADKQRLADAITKLRGMSDSSIG 324

Query: 531 EFLNFTLRNEQNSYSSLQE--------LISELEQYPPTIKRAHSAN-HNEVRIMTVHTAK 581
           E L F   +         E        L   L                      T H  K
Sbjct: 325 EVLTFCHTSGLRRLDDRIEVFKTNKPYLYHRLSAVRYKEFMNLFEYLEGRTPFSTQHKVK 384

Query: 582 GLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKK 641
           G E   VF+    +  ++  + + +                                   
Sbjct: 385 GNEFERVFVA-LDNGNWNLYNFEYLFSGSGT----------------------------A 415

Query: 642 STQEEYNRLLYVGMTRASDQLIIC 665
           S  E   ++ YV  TRA +++++ 
Sbjct: 416 SVLERSRKIFYVCCTRAREEIVVY 439


>gi|253682176|ref|ZP_04862973.1| ATP-dependent DNA helicase [Clostridium botulinum D str. 1873]
 gi|253561888|gb|EES91340.1| ATP-dependent DNA helicase [Clostridium botulinum D str. 1873]
          Length = 706

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 21/105 (20%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           K+  EI H++IDE QD SL+Q+ VI+ LT           +      VGD+ Q +  F G
Sbjct: 490 KLSDEIKHVVIDEAQDYSLLQFRVIKELT-----------NCSGYTIVGDKNQRLIPFIG 538

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
             P  +    ++               +L  S+RST +I+   +K
Sbjct: 539 EVP--MDNMDKVFDN--------IKEFKLNKSYRSTKEIMEYANK 573


>gi|241589834|ref|YP_002979859.1| DNA helicase II [Ralstonia pickettii 12D]
 gi|241664375|ref|YP_002982735.1| DNA helicase II [Ralstonia pickettii 12D]
 gi|309782955|ref|ZP_07677675.1| DNA helicase [Ralstonia sp. 5_7_47FAA]
 gi|240866402|gb|ACS64063.1| DNA helicase II [Ralstonia pickettii 12D]
 gi|240868546|gb|ACS66205.1| DNA helicase II [Ralstonia pickettii 12D]
 gi|308918379|gb|EFP64056.1| DNA helicase [Ralstonia sp. 5_7_47FAA]
          Length = 585

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 67/182 (36%), Gaps = 21/182 (11%)

Query: 98  EKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA--KKKNCVLDFEDLIIN 155
           + L+++  +F       ++ ++ ++ LA+  +A  L   Y +   K     +  +DL+  
Sbjct: 107 QALRQALLDFNAALPTGSSRRVDQAELAA-RVAARLEVKYSDRGSKFLEGRIYHDDLLSI 165

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
                 + D  A I   +     +I IDE QDTS    +++               +   
Sbjct: 166 ARIAYTRYDKLARI---VASRYPYIFIDEYQDTSEAVIDIL------LCRMLPLAGNKLV 216

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           L   GD+ Q+IY            E +   +          +I    + R +  ++ V++
Sbjct: 217 LGFFGDKMQNIY---------HHGEHKGIGELPAELAAPLEVIVKRENRRCSLRVMDVLN 267

Query: 276 KV 277
            +
Sbjct: 268 NI 269


>gi|111225671|ref|YP_716465.1| putative DNA helicase [Frankia alni ACN14a]
 gi|111153203|emb|CAJ64952.1| putative DNA helicase [Frankia alni ACN14a]
          Length = 719

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 93/351 (26%), Gaps = 59/351 (16%)

Query: 12  SYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFS--LL 69
           + + + + +          I K   L       T  K     +QA+ +       +    
Sbjct: 327 TVDGLARRVLAATDTDREKIRKVTVL-----GDTDQKIRDLWEQAAASTASAGNAASTAW 381

Query: 70  SSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTL 129
           S  FL  +        T  + +   D    LK ++             +  + +      
Sbjct: 382 SVDFLIAE------WSTVVLAQGITDRATYLKATR-----------AGRGRRLSRIDRAA 424

Query: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTS 189
              +   +      +    F  +      +      S  +         H ++DE QD  
Sbjct: 425 LWQIFERFALLLDAHERTTFTQIASRAAQV----PTSGVV-------YRHAVVDEAQDLH 473

Query: 190 LIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRAT 249
              W ++R +           S P  +F VGD  Q IY++                    
Sbjct: 474 PAHWRLLRHVV---------PSGPDDIFLVGDAHQRIYAYKVTLSAL------------- 511

Query: 250 NAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQ 309
               +     L +++R++ +IL     V +       L + + T    RS   G      
Sbjct: 512 GIETRGRSRRLTVNYRTSREILRWCMGVIA-GMTVDDLEDTADTLAGARSEFTGPPPRT- 569

Query: 310 LWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                     S      + W     S  +    +   + +      + G  
Sbjct: 570 RGFVRREDELSALASAVQEWIDGGISPNEIGVVARTRQLVEEAEKALRGAG 620



 Score = 42.2 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 60/443 (13%), Positives = 107/443 (24%), Gaps = 73/443 (16%)

Query: 268 ADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR---IGQVGTVQLWEQVVSQHDSQCNP 324
             IL  VD +       + L+   T   + R              LWEQ  +   S  N 
Sbjct: 317 PAILQTVDVLTVDGLARRVLAATDTDREKIRKVTVLGDTDQKIRDLWEQAAASTASAGNA 376

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
              +W+   D L  E S  +LA+ I    + +  T         R+ +A    +  R   
Sbjct: 377 ASTAWS--VDFLIAEWSTVVLAQGITDRATYLKATRAGRGRRLSRIDRAALWQIFER--- 431

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS- 443
              L+    R                 +    A+ D               +   +L+  
Sbjct: 432 FALLLDAHERTTFTQIASRAAQVPTSGVVYRHAVVDEAQDLH--------PAHWRLLRHV 483

Query: 444 -----PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
                       D   +I   +     +    +  +      ++   + +   + +    
Sbjct: 484 VPSGPDDIFLVGDAHQRIYAYKVTLSALGIETRGRSRRLTVNYRTSREILRWCMGVIAGM 543

Query: 499 SPHDFFTLILGAKKGRQQFIS-----RFGNEVIDVLDEFLNFTLRNEQNSYS----SLQE 549
           +  D           R +F       R      D L    +          S     +  
Sbjct: 544 TVDDLEDTADTLAGARSEFTGPPPRTRGFVRREDELSALASAVQEWIDGGISPNEIGVVA 603

Query: 550 LISELEQYPPT-------------IKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQ 596
              +L +                       A    VR++T+H  KGLE   V L+     
Sbjct: 604 RTRQLVEEAEKALRGAGLDVLVLASDSPDDAVRPGVRLVTMHRVKGLEFRAVALIGFEED 663

Query: 597 VFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMT 656
           +                                 +         +    +   L YV  +
Sbjct: 664 ILPF-----------------------------PVSDVDDAEELERRLAQERCLAYVAGS 694

Query: 657 RASDQLIICKHSNTSNEKKSNQR 679
           RA + L I      S    S   
Sbjct: 695 RAREHLRITWTGRQSPFLPSAPD 717


>gi|322807658|emb|CBZ05233.1| ATP-dependent DNA helicase rep [Clostridium botulinum H04402 065]
          Length = 709

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 55/181 (30%), Gaps = 19/181 (10%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +   EI HI+IDE QD S +Q+ V++  T+            +++  VGD  Q       
Sbjct: 489 RYRNEIKHIVIDEAQDYSFLQFVVLKEFTDC-----------QSITIVGDVNQRTLPCKD 537

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             P   L         +           L  S+RST +I+   +K     +    + E  
Sbjct: 538 EVPMLCL--------DSVFNRVDVEYFNLDKSYRSTKEIIEYANKHLKANKIVPLVREGD 589

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   +    +  V  +   +     +      +       +  E    +    I  
Sbjct: 590 PVKEVTVKNSREAIDKVNYYLSYLENKGYENIAIITTTLEQGKVIGSELKKQMYINLIER 649

Query: 352 T 352
            
Sbjct: 650 E 650


>gi|20521005|dbj|BAA20800.3| KIAA0342 protein [Homo sapiens]
          Length = 2467

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 25/280 (8%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                  +    +    +   G+ +   KA  ++       +   F +  +    +    +
Sbjct: 777  AQEESTIPSWQEDEEEAEVDGDYSEEDKAVEMRTGDSDPRVYVTFEVFKNEIWPKMTKGR 836

Query: 82   KNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
                     +EI        E L        +   +    K   +     +    L + Y
Sbjct: 837  TAYNPALIWKEIKSFLKGSFEALSCPHGRLTEEVYKKLGRKRCPNFKEDRSEIYSLFSLY 896

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            ++ + +    D ED++ N +  L K  V  W        I+ +  DE+QD +  +  ++ 
Sbjct: 897  QQIRSQKGYFDEEDVLYNISRRLSKLRVLPW-------SIHELYGDEIQDFTQAELALLM 949

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRATNAGQ 253
                         + P ++F  GD  QSI    +F  ++ +       R    +     +
Sbjct: 950  KCI----------NDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASRNTIDKQCAVRK 999

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
               I +L  ++RS + IL +   V  + +     S D   
Sbjct: 1000 PKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLP 1039


>gi|308181396|ref|YP_003925524.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308046887|gb|ADN99430.1| exonuclease RexB [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 1201

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 71/749 (9%), Positives = 176/749 (23%), Gaps = 158/749 (21%)

Query: 304  QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIF 363
              G V L +    Q  +    ++    +    L +  S      ++   I  M+      
Sbjct: 287  APGLVALDDFWRGQPQAATGYEE---PNTNVHLFRTDSRQTELAQVGRMIRAMVAKKHAD 343

Query: 364  SNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                      +D L++ R          +     ++ +I    + +  + DH  ++ + A
Sbjct: 344  PADDYH---YRDFLIMTR---HLDAYQTMLAPTFHELEIPYFVDLQRSMADHPLVELINA 397

Query: 424  LGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQH 483
            L      Q      + +LK+ L   + +          +   + E     +     ++  
Sbjct: 398  LFDIDAQQYQYRDVMRVLKTELLMPNINGQPMDRQAYRQAVDLTENFILKSGYHGQRWVQ 457

Query: 484  VIKY--------------------------------------IHELIHIAQFCSPHDFFT 505
               +                                        ++       +      
Sbjct: 458  REDWQYFQLTEGDAGVETDQNAEISRQINLIHHFVAETLPPFFKKMRQAPDGKAAVTLLV 517

Query: 506  LILGAKKGRQQFISRFGN-----------EVIDVLDEFLNFTLRNEQNSYSSLQELISEL 554
              L ++    Q ++               E       F            +   E+   L
Sbjct: 518  NFLTSQGVTDQLLAWRDQALDRQDVRAAAEPEQTWQTFCGMLDEYVTILGAEPFEITDFL 577

Query: 555  EQYPP----TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
                            +  ++V I      +  +  VVF+V     V   + +    +  
Sbjct: 578  ALLQAGFEGASYSQIPSTLDQVLISESGMVQSQDHKVVFMVGATDLVMPDRIMTNNLLSD 637

Query: 611  SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
               ++    +         N  + +          + + L Y+    A   L        
Sbjct: 638  VDKENLQPTLSSLDGDHYLNDSAVV-------QLGDESCLNYLAFLSARRHLFFSAPLKD 690

Query: 671  SNEKKSNQRTWYDMVYDSF--------HNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
              E   N   +   +   F           +            K   I++    +    T
Sbjct: 691  DQETDLNWSNYVRRIQRQFNLREHTYLGTPDPTNADARPFVGTKRRTISHVIQVYRDVLT 750

Query: 723  PLEREETIKQLMDEQKIPKKLFSPIKNDI----------------NEPYILNPSTIDTK- 765
                   +   +    +   L   +  D                 N+P  L P++++   
Sbjct: 751  TNTDRNRVGAPLQPAPVWVWLRQQLTRDPQFGELARQLMAGLSYRNQPVKLTPASVEALY 810

Query: 766  -------------------------GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHK 800
                                     G    E  + +    + G   H +L  +       
Sbjct: 811  GYQIYTSISKLEEFYRNQYAYFLKYGLKLRERDVFELSAASTGEFFHAVLDGLIKALRSD 870

Query: 801  RKNFITSYCTKNAKLWPAKEY---------------------KNLLLSITRLLENPMMTT 839
            +     +   +  +                            + L+ ++ ++       +
Sbjct: 871  QIPLAQASDQQLGQYLETVTRQILDQPQFTILTSSNRMAYLQRQLINTVRQIAFAIRNQS 930

Query: 840  AMSCDS--YSEVSV-----SGKINCPK------KDIIISGRIDQIS---ISQQNIF-IFE 882
             +S      +EV          +            + + G+ID++    ++ Q+   I +
Sbjct: 931  KLSAAEPKQTEVLFGNVGKEHGLKALDFQIDATHSVHVRGKIDRLDQIQVADQSYLGIVD 990

Query: 883  YKTHHHVPQEIEHIPYTHIAQLSIYEKIL 911
            YK+  H     E        Q+  Y   +
Sbjct: 991  YKSSQHKFDFQEAYY-GLAMQMLTYLDAV 1018


>gi|313201053|ref|YP_004039711.1| DNA helicase/exodeoxyribonuclease v subunit b [Methylovorus sp.
           MP688]
 gi|312440369|gb|ADQ84475.1| DNA helicase/exodeoxyribonuclease V, subunit B [Methylovorus sp.
           MP688]
          Length = 889

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 64/560 (11%), Positives = 152/560 (27%), Gaps = 80/560 (14%)

Query: 393 TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGR--------------FILSQEDDLSFV 438
            R    +   +   +    L     +   +AL R               +L+     S  
Sbjct: 249 VRPGLVEADRAYDFSLGLPLNTQPVVHAALALLRIFWQQRIEQQDFSVLLLNPYWSASLG 308

Query: 439 CM-----LKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIH-ELI 492
                  L S +  +    +  +   R                 +   +        +  
Sbjct: 309 EADARAQLDSRMRQWLPQTVSMMRLLRLIERLQEGENPLPIGQLLQDLRAGWAVREAQPR 368

Query: 493 HIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNE--QNSYSSLQEL 550
                    +F  L+   +   ++ IS    +        L    R +   ++ + +Q L
Sbjct: 369 RQLPSLWAAEFEQLLAALQWPGERSISSHEFQAQRAFSRSLQALARLDVFGDTLNGMQAL 428

Query: 551 ISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
               E     I +   +    V++M +          ++++     V+         I  
Sbjct: 429 QRLGELCREQIFQPEVSGDPPVQVMGMLEGAAAPLDALWVMGMNDHVWPPPPRPNPLIPA 488

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
           ++    G+P       + + + +   + L +       RLL+         LI+   +  
Sbjct: 489 TVQRAAGVP------NADSAVQTAFARILHQ-------RLLHTAP------LIVFSSALK 529

Query: 671 SNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREET- 729
             E++         +     + +  K   L   +   E  A +    H      E E   
Sbjct: 530 DGERQLRASPILSDIPVF--DGDWAKAQTLAEQLAHGEHAALQVLDDHMAPAVGEGEHVS 587

Query: 730 --IKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIH 787
                L  +   P   +   +                 G   L++ ++  +   RG ++H
Sbjct: 588 GGTGLLKAQAICPAWAYYQYR----------------LGARELKAPVNGLEPAERGTLVH 631

Query: 788 KLLQV---------IFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMT 838
            +LQ          +  L   +    +     +  + + A+  + L  +  +L +  ++ 
Sbjct: 632 GVLQHFWQGRDLAYLQALDAEELHAALAEAAQQALQDFAAERDETLSPAFCQLEQERLIK 691

Query: 839 ---TAMSCDSYSEVSV-----SGKINCPKKDIIISGRIDQISISQQNIFIF-EYKTHHHV 889
                ++ +   EV               + + I   +D+I        +  +YKT    
Sbjct: 692 LVSAWLAFEKTREVDFSVLDCERDTKVMIEGVEIRLVLDRIDQLPDGRVLIMDYKTGQKP 751

Query: 890 PQEIEHIPYTHIAQLSIYEK 909
                        QL +Y  
Sbjct: 752 DIRNWAESRITEPQLPVYAA 771


>gi|212551066|ref|YP_002309383.1| hypothetical protein CFPG_709 [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549304|dbj|BAG83972.1| conserved hypothetical protein [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 946

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 848 EVSVSGKINCPKKDIIIS--GRIDQISISQQNIFIFEYKTHHHVP-----QEIEHIPYTH 900
           E  ++G     K +I I+  G ID++        I +YKT H         E+    + H
Sbjct: 792 EFPINGSFPIKKGNIHINIGGVIDRLQEKDGKHIIIDYKTGHEKNSFKNLSELLSTKHKH 851

Query: 901 IAQLSIYEKILKDSYPNKSL 920
           I Q  IY  +      NK +
Sbjct: 852 IFQAFIYATLYSQKEKNKPI 871


>gi|91214700|ref|ZP_01251673.1| Ankyrin [Psychroflexus torquis ATCC 700755]
 gi|91187127|gb|EAS73497.1| Ankyrin [Psychroflexus torquis ATCC 700755]
          Length = 937

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 83/268 (30%), Gaps = 48/268 (17%)

Query: 87  QEINKKSPDLKEKLKKS--------QDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYE 138
           ++ +K   + K  L           + E+  +  + + +   + +             Y 
Sbjct: 237 KDSHKLYEEFKGVLTGLNVEKEFLSRQEYEALGVKQSVFLAGERSE-----VYSFFEKYL 291

Query: 139 EAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRS 198
           +  K++ + D                +S      +    + I++DEVQD + +Q  +I  
Sbjct: 292 QFLKESNLYD-------------INIISHQWLPLVKPIYDFIIVDEVQDFTTVQLHLI-- 336

Query: 199 LTEDFFVGKNTHSSPRTLFAVGDEKQSIYS--FHGAEPKRVLREKRINQKRATNAGQKFS 256
                     +   P      GD  Q ++   F  +  K  L           +  +   
Sbjct: 337 --------LKSLKKPENFILCGDSNQIVHPNFFSWSSVKSYL---------FKSELKGKE 379

Query: 257 IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVS 316
           I  L  ++R+   +  + +K+  I  +  G  +  +  +   S        V L      
Sbjct: 380 INILKTNYRNAPAVTDLANKLLKIKTSRFGSIDKESAYLV-NSISKKNGEVVFLQSNDKV 438

Query: 317 QHDSQCNPQQESWTSYFDSLPQESSASI 344
           + D   N +  +  +      ++ + + 
Sbjct: 439 KADLNQNTKGSTKFAVIVMRNEDKAEAR 466


>gi|116072255|ref|ZP_01469522.1| hypothetical protein BL107_10726 [Synechococcus sp. BL107]
 gi|116064777|gb|EAU70536.1| hypothetical protein BL107_10726 [Synechococcus sp. BL107]
          Length = 210

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 50/153 (32%), Gaps = 27/153 (17%)

Query: 766 GKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL 825
            + +++      ++  RG  +H  ++                +   +      K  K + 
Sbjct: 19  SEPDIDHDAVTRESAQRGTAVHLAME---------------KWLQSHDHTPIEKHLKWIY 63

Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDI-IISGRIDQISISQQNIFIFEYK 884
                      + + +S  + + ++V   ++     +   +G  D + + + ++ + +YK
Sbjct: 64  P----------LQSLVSRATKT-LAVEIPLHYSIAGVGSYAGSCDGVMLVKGDVVLIDYK 112

Query: 885 THHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           T                 QL+ Y   + D Y +
Sbjct: 113 TKRPGKYVSPKYCEQQRLQLAAYSLAISDLYQD 145


>gi|323145920|gb|ADX32161.1| hypothetical protein helD [Pseudomonas phage P3_CHA]
 gi|323146106|gb|ADX32346.1| hypothetical protein helD [Pseudomonas phage PAK_P3]
          Length = 527

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 79/281 (28%), Gaps = 65/281 (23%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
            +   I +DE QDT+    +++                   L  VGD +Q IYSF G+  
Sbjct: 226 SQYKVIYLDEAQDTNDCVLDIV------------LRQQDSLLVMVGDPRQQIYSFRGSVN 273

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTT 294
                              K    +L  SFR    +  V + +      AQ L       
Sbjct: 274 AMA--------------KIKAPECKLTTSFRFGEKVAEVAN-IILQNSKAQALHGWEKLE 318

Query: 295 IRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA-------R 347
            +             +WE      D       E    +       ++    A       +
Sbjct: 319 SK-------------VWESNGFLADGDAEGVPEIPEQHARLYRTNAALVWDAVNLIGQGK 365

Query: 348 RIAYTIS-----NMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
            +   I       ++ + T    G ++ ++ ++I  L           +     +     
Sbjct: 366 SVRLEIDTRDFIRLLESATALYQGDEKKVKHENI--LCYTSWQEFRDEYAESPGELGRVC 423

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
            ++  D           D   + + +   E+D S   +L +
Sbjct: 424 RIIEGD-----------DQWKIFKALRDHENDPSADIVLTT 453


>gi|182438373|ref|YP_001826092.1| putative helicase [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178466889|dbj|BAG21409.1| putative helicase [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 793

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 97/342 (28%), Gaps = 44/342 (12%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
              P  +   ++   S S   G  T  +    L+ +       E        FL      
Sbjct: 409 LLRPRARKLLLDALWSKSSGRGRYTDPQLVAELRSSFDEDVSTETP------FLEFLDAW 462

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLA-----SLTLAKYLNA 135
              +  + +     D + +L +     +   +     +  K   A            L  
Sbjct: 463 WPELTPRRVLAAMADER-RLARWSRRILNQGETRRLARSLKRLDADGGGPLSVHDVALLD 521

Query: 136 HYEEAK------KKNCVLDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDEV 185
             +         ++    D  D +    +L+ +R+ + W R +       E  H+++DE 
Sbjct: 522 ELQALLGTPNRPRRKREADPLDQLTGLEELMPQREETQWERAERLAAERTEYAHVIVDEA 581

Query: 186 QDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQ 245
           QD + +QW ++                  T   VGD  QS      ++P           
Sbjct: 582 QDLTPMQWRMV-----------GRRGRHATWTIVGDPAQS----SWSDPDEAAA-----A 621

Query: 246 KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQV 305
           +      +      L +++R+ A+I  +  KV ++            +T         + 
Sbjct: 622 RDEALGSRPRRRFTLTVNYRNPAEIAELAAKVLALAMPGMESPAAVRSTGVVPRFEPVRG 681

Query: 306 GTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
           G   L   V  +          +         +  +   LA 
Sbjct: 682 GG--LAATVREEAARLLAEVDGTVGVVVAMNRRAQAREWLAE 721


>gi|237801916|ref|ZP_04590377.1| hypothetical protein POR16_24033 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024774|gb|EGI04830.1| hypothetical protein POR16_24033 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 487

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 24/149 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++  T              T   VGD  Q +Y F GA
Sbjct: 187 LSQRFGAILLDEGQDVNPVIANLVQIQT-------------ITQVTVGDRHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    +  +K             L  SFR    +  V + + S       L     
Sbjct: 234 VDALNSPAMKDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            T+  R+          L   V    ++ 
Sbjct: 283 PTLVKRALPDDLPHRTYLHRTVSGVIENA 311


>gi|187776740|ref|ZP_02993213.1| hypothetical protein CLOSPO_00255 [Clostridium sporogenes ATCC
           15579]
 gi|187775399|gb|EDU39201.1| hypothetical protein CLOSPO_00255 [Clostridium sporogenes ATCC
           15579]
          Length = 709

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 56/181 (30%), Gaps = 19/181 (10%)

Query: 172 KIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHG 231
           +   EI HI+IDE QD S +Q+ V++ LT+            +++  VGD  Q       
Sbjct: 489 RYKTEIKHIVIDEAQDYSFLQFVVLKELTDC-----------QSITIVGDVNQRTLPCKD 537

Query: 232 AEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDS 291
             P   L         +           L  S+RST +I+   +K     +    + E  
Sbjct: 538 EVPMLCL--------DSVFDRVDVEYFNLDKSYRSTKEIMEYANKYLKTNKIVPLVREGE 589

Query: 292 TTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAY 351
                   +    +  V  +   +     +      +       +  E    +    I  
Sbjct: 590 PVKEVIVKNTDEVIDKVNYYLSYLENKGYESIAIITTTLEQGKVIGTELKKQMYINLIER 649

Query: 352 T 352
            
Sbjct: 650 E 650


>gi|146337256|ref|YP_001202304.1| helicase-exonuclease type V family protein AddB subunit
           [Bradyrhizobium sp. ORS278]
 gi|146190062|emb|CAL74054.1| putative helicase-exonuclease type V protein family, addB subunit
           [Bradyrhizobium sp. ORS278]
          Length = 1048

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/374 (9%), Positives = 97/374 (25%), Gaps = 46/374 (12%)

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
               +     R    +  +++I     A+ +++  + +      ++         +   +
Sbjct: 603 FHTAFSDRAVRRPERHGAQLQIYGPLEARLMQTDRMIIGGLVEGIWPPAPRIDPWLSRPM 662

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
               G+ +   +     +  + L+                        ++I+   + +  
Sbjct: 663 RHQLGLDLPERRIGLSAHDFAQLLGA---------------------PEVILTHAAKSGG 701

Query: 673 EKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE-ETIK 731
                 R  + +   +     +    +    +   E +              +   E   
Sbjct: 702 APAVASRFLHRLQAVAGDAQWKAATARGETYVRYAEVLDQPREVKPIPQPAPKPPLEARP 761

Query: 732 QLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ 791
             M    I   L  P          L+P          L+ +       +RG  IH+ + 
Sbjct: 762 LRMSVTAIEDWLRDPYTIFARYILRLDP----------LDPVDMPLSAADRGSAIHEAIG 811

Query: 792 VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSC--DSYSEV 849
                   +             +   A   +              +    +    +  E 
Sbjct: 812 EFTQTFAKELPLHPAHALRVIGEKHFAPLMERPEARALWWPRFQRIAGWFAAWETARREH 871

Query: 850 --SVSGKINCPKK-------DIIISGRIDQIS-ISQQNIFIFEYKTHHHVPQEIEHIPYT 899
             +++ +I              ++S R D+I   ++    I +YKT        + +   
Sbjct: 872 IGAITAEIRGEIGIPLGKDRTFMLSARADRIEQRAEGTYAILDYKTGQPP--TAKQVRMG 929

Query: 900 HIAQLSIYEKILKD 913
              QL++   IL++
Sbjct: 930 LSPQLTLEAAILRE 943


>gi|311746369|ref|ZP_07720154.1| hypothetical protein ALPR1_08178 [Algoriphagus sp. PR1]
 gi|126575254|gb|EAZ79586.1| hypothetical protein ALPR1_08178 [Algoriphagus sp. PR1]
          Length = 954

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 93/348 (26%), Gaps = 60/348 (17%)

Query: 573 RIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIV 632
           +IM V  ++ L+   V + +     F         I  ++    G+P+            
Sbjct: 511 QIMGVLESRNLDFKRVIICNMNEDSFPPAAGLNSMIPFNIRKAFGLPVQEQNDSI----- 565

Query: 633 SDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHND 692
                  +     E   ++Y               S+     + ++      V       
Sbjct: 566 -YAYTFYRLLHSAEEVHMIY------------TTASDQGKAGEKSRYIQQMGVELGREIA 612

Query: 693 ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKNDIN 752
           E V  I +     ++  I          +  L  E    Q           FSP    + 
Sbjct: 613 EEVIYIPIDQKSPEEITIQKNNEVLGLLDKYLIDEHGRSQT---------SFSPSALSVF 663

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI------------------F 794
               L             + +  +      G + H  ++++                   
Sbjct: 664 LDCRLKFYLQYLANIQEKQEVNEEIDAAVFGNLAHLSMEILYQDFAKRKGRTLLEKSDFD 723

Query: 795 TLPEHKRKNFITSYCTKNAKLWPAKEYK-----NLLLSITRLLENPMMT--------TAM 841
            L +      I     +   L    + K      +   + +   + ++           +
Sbjct: 724 DLSKTWVFPAIEKAIRQFYHLEDETDTKLNGQMAIARDVLQKYLHQILKVDKDSAPFRLI 783

Query: 842 SCDSYSEVSVSGKINCPKKDIIIS--GRIDQISISQQNIFIFEYKTHH 887
           S +   + +   +I   K   I+S  G ID++   Q ++ + +YK+  
Sbjct: 784 SLEKEKKYTAGIEIETSKGKQIVSLKGIIDRVDEHQGSVRLIDYKSGQ 831


>gi|206895197|ref|YP_002247357.1| hypothetical protein COPRO5265_1039 [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737814|gb|ACI16892.1| hypothetical protein COPRO5265_1039 [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 293

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 22/141 (15%)

Query: 781 NRGLIIHKLLQVIFTLPE----HKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPM 836
             G  +H+L+  + +          ++   S   ++        +   +  +  +L    
Sbjct: 34  QFGSAVHELIYRMLSGDHKGLFDTEEDLAWSVLLESFPGAVESSFTEQV--VKEMLNMAR 91

Query: 837 MTTAMSCD---SYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEI 893
                + +   S  EV           D+++ G  D +        + ++KT        
Sbjct: 92  AAKRFAENYNPSQFEVKFEYGF--GSDDMLVIGIADAL----GENLVLDWKTGSF----- 140

Query: 894 EHIPYTHIAQLSIYEKILKDS 914
             +  +H  Q+ IY  +L   
Sbjct: 141 --MAESHRQQVKIYATMLWRL 159


>gi|187736052|ref|YP_001878164.1| ATP-dependent nuclease subunit B-like protein [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426104|gb|ACD05383.1| ATP-dependent nuclease subunit B-like protein [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 957

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 69/644 (10%), Positives = 163/644 (25%), Gaps = 84/644 (13%)

Query: 288 SEDSTTTIRHRSSRIGQVG-TVQLWEQVVSQHDSQCN----PQQESWTSYFDSLPQESSA 342
           + +    +RH      + G  VQ+W     +  +  +    P  E W+     +      
Sbjct: 197 TAEVPPPLRHALQHAERNGVPVQIWIHAPEEEAASFDSWGCPLPEEWSRRPIPIRDGQIR 256

Query: 343 -----SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
                + LA      I+      T             DI + V      P +        
Sbjct: 257 IAANPARLAEETCRIIARTAEGGTP------------DIALGV----CDPDMNVALDAAL 300

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF----NFSEDDI 453
             Y   +   +         +  L  L R +  +        + +S L            
Sbjct: 301 RQYGWGLHNPEGKPFAGSGVMDLLRNLRRALEEKGTARPVYSLARSSLLCASLGIKGQQG 360

Query: 454 FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCS-PHDFFTLI----- 507
                 + + + + E  +   +     +      I  ++      + P      +     
Sbjct: 361 CCAALDKIQQKFLPETEEYLLSRLKEAYPGAFPSIQAILEWRNRMAEPGMLGERLMEWFP 420

Query: 508 -LGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHS 566
            L    G +       +  +  L      +        + L  L+  L+      +R   
Sbjct: 421 ALATIYGPETEAMEMFHSCLSGLMRLQQRSTAFSSPETA-LLLLMKCLQPLRVRNRRKAH 479

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
           A  + +  M VH         + L            +    +   L +  GI  +  +  
Sbjct: 480 AALDSLGWMEVH---FRPERNLILTGLNEGTVPEGGVSDQFMPEELRETLGIDSFNRKKA 536

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVY 686
             + +++ L+   ++                    L I     +S        +      
Sbjct: 537 RDSFLLTALLHSREREG-----------------SLTILLSRTSSRNDPLTPSSLLMRCP 579

Query: 687 DSFHND------ERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
           ++          + +  +       +  W   + +        +       +   ++K  
Sbjct: 580 EAELPHRVERLFQEISDVPAPLPYQRGNW-HLQPAEGWKTAADIGAMAPGYKNPWKEKGL 638

Query: 741 KKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI------- 793
               S +K  +  P            +        D      G ++H +L+         
Sbjct: 639 AFSPSVLKRFLACPMRFWMREALHMNEEEFLPDKEDMAVNELGTMLHDVLECFCREHAVL 698

Query: 794 -FTLPEHKRKNFITSYCTK-------NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDS 845
              +     +N IT    +        + L P    K  +     +     +      + 
Sbjct: 699 KDGMNAASFQNAITEILEQTFRKQYGPSPLMPLLLQKRSMEQRLSVYAVQHLQAL--QEG 756

Query: 846 YSEVSVSGKINC-PKKDIIISGRIDQISIS-QQNIFIFEYKTHH 887
           +S ++   ++         +  RID+I      +I + +YKT  
Sbjct: 757 WSCIAFEHQVENWILGGFPMKFRIDRIDRHADGHIRVIDYKTGA 800


>gi|50913957|ref|YP_059929.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10394]
 gi|81372202|sp|Q5XCW7|ADDB_STRP6 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|50903031|gb|AAT86746.1| ATP-dependent nuclease subunit B [Streptococcus pyogenes MGAS10394]
          Length = 1071

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 73/653 (11%), Positives = 172/653 (26%), Gaps = 107/653 (16%)

Query: 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND 399
                    +A +I   +              + KDILVL+    D          + + 
Sbjct: 302 HHQKEEIEHVAKSIRQKLYEG----------YRYKDILVLL---GDMDAYQLQIGPIFDK 348

Query: 400 YKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-FSEDDIFKICT 458
           ++I         +  H  ++ + +L R           + MLKS LF  F + DI +   
Sbjct: 349 FEIPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDDSDIDRFEE 408

Query: 459 QRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF--TLILGAKKGRQQ 516
                +              S  Q+ + +++E+          + F     LGA    + 
Sbjct: 409 YTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIV-LPLQELFKSQKQLGASLVDKL 467

Query: 517 FISRFGNEVIDVLDEFLNFTLRNEQNSYSS--------------------LQELISELEQ 556
            +      + + +       L  E+N                        L + ++ ++ 
Sbjct: 468 ILFLKKIRLAENMQGLAQSQLEVEKNEEVWKRFTDILTSFHHIFGQEKLRLSDCLALIKT 527

Query: 557 YPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDD 615
              + +        + V I +    +    P V+ +      F  +    +H    L+D 
Sbjct: 528 GMKSAQYRVVPATLDVVTIKSYDLVQPHSKPFVYAIGLTQSHFPKQ----IHHSGLLSDQ 583

Query: 616 PGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKK 675
               I   ++               K   +    L          +L++   +  +    
Sbjct: 584 ERARINEIRNYRH---FDIASAENSKKNHQTALSLFNAATK----ELVLSVPTVINETFD 636

Query: 676 SNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMD 735
                  +++       ++ K     ++ +   + A            L       ++  
Sbjct: 637 DLSPYLKELINFGLPLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDLIEMSDQDKMFW 696

Query: 736 EQKIPKKLFSPIKNDINEP--------YILNPSTIDTKGKTNLESLLSD----------- 776
              +        K  +  P          L+   I+      +   LS            
Sbjct: 697 TVVLRYLRKQLRKQQLELPTSDYRLSTKSLSKEVIEVCFPKGIPLKLSATALTVFYNNQY 756

Query: 777 -----------------NQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                              +   G  +H++ + +      +       +  K  +     
Sbjct: 757 NYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEP------FDNKLKQAIYHT 810

Query: 820 EYKNLLLSITRLLENPMMT-TAMSCDSYSEVSV------------SGKINCP-KKDIIIS 865
             ++    + +       +   +     S   +                +     +I++ 
Sbjct: 811 NQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNIKVIDQEKNFHLDMGNEILVH 870

Query: 866 GRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPN 917
           G ID+I   S  ++ + +YK+  +   +I         QL  Y   LK   P+
Sbjct: 871 GIIDRIDQLSDGSLGVVDYKSSANQF-DIGTFYNGLSPQLVTYLAALKQIAPH 922


>gi|77360039|ref|YP_339614.1| DNA helicase II [Pseudoalteromonas haloplanktis TAC125]
 gi|76874950|emb|CAI86171.1| DNA helicase II [Pseudoalteromonas haloplanktis TAC125]
          Length = 615

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 62/539 (11%), Positives = 149/539 (27%), Gaps = 114/539 (21%)

Query: 144 NCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203
              +  +D+I     L+ +  +   ++     +  +I +DE QDT    ++ + +     
Sbjct: 166 KGQIGHDDVIDLAAYLISESLI---LQRGFGFQFPYIFVDEAQDT----FDSVIAAFNTI 218

Query: 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLS 263
             G+        +   GD  Q IY             +               +IE   +
Sbjct: 219 CSGEGL----PMVAYFGDPMQQIYDNGVGVFDGPEGFR---------------LIEKEEN 259

Query: 264 FRSTADILTVVDKV---FSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
           FRS   I+ + +K+                 +  +    +        +   + +    S
Sbjct: 260 FRSATSIVALTNKLRNDIQQMPAGDSALNVGSVLLTLIETEAPAGPRGRYTPEQLDLSLS 319

Query: 321 QCNPQQ--ESWTSYFDSLPQESSASILARRI-AYTISNMIGTDTIFSNGKKRVIQAKDIL 377
           + +       W    ++        ++ARR+   ++ N+       +  +   I     L
Sbjct: 320 KFDEALQYIGWQENKEAKRLFLVRQMIARRLGFSSLQNLFTGVYASNKAQDEYIDGDHFL 379

Query: 378 VLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437
           V    +     +  L   ++N  K  +VG     L +     D+       ++++  L  
Sbjct: 380 VKPFIKS----LCPLIVSMQNGNKKQIVGI----LREETPAFDI-----LGINKDRPLKE 426

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQF 497
           +  +   L     +++ ++  +R   + +    +        +    +            
Sbjct: 427 MLDIAKDLV----NELSEMWVERPIGDILRYAKENRLCTISERLAATLDR---------- 472

Query: 498 CSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQY 557
                                     E  D            E++    L +    +   
Sbjct: 473 ----------------------EPRVEAYDN------AIHAEEKSD--WLADEFLSMSTN 502

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
                    ++H    + T H +KG E   V +V    +   + +     + P+   D  
Sbjct: 503 ELLPYYGFVSDHTA--LSTQHGSKGEEYEDVLVVFDDIEASWNMYSFNKLLTPAAAGDG- 559

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKS 676
                                  +       +L YV  +RA   L I  +   +   ++
Sbjct: 560 ----------------------TEGQLARSRKLAYVCFSRARMNLRIFLYCQDAKAARA 596


>gi|306825344|ref|ZP_07458684.1| DNA helicase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432282|gb|EFM35258.1| DNA helicase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 641

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 64/539 (11%), Positives = 144/539 (26%), Gaps = 86/539 (15%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +  + ++I    +         I   I    ++I +DE QDTS +  +++          
Sbjct: 151 ISHDHVLIVAEKMFSTYPKLCDILIDIA---DYIFVDEYQDTSPLVVKIL-------LEY 200

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               +    +   GD  Q+IY     +       K                I  P + R+
Sbjct: 201 IQNRTKKNIVGFFGDSMQAIYDSGVGDLSSYNLIK----------------ITKPQNRRN 244

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              ++ + +K           ++D+   + + S      G V+                Q
Sbjct: 245 PKKVIDLANKFRDDGLVQTPSNDDTAPNMDNGSI---IPGIVKFVYGNDINQLEILRGSQ 301

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
                 F++  +     +  +         +  +    +    +      + L+   K  
Sbjct: 302 LFRKLEFNAPSKTKELRLTHK---------LNAEMAGFSKLFELYNTDLFVKLITGIKKK 352

Query: 387 PLITFL------TRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFI-------LSQED 433
             +  +       + L  + +I V      I+ +  +  +L A    I       +S + 
Sbjct: 353 INVNKIDDNGKLFKDLVEESQIVVRRGGPLIVDEIKSNSELSAFYDEIKTCSFEEVSSKS 412

Query: 434 DLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIH 493
            ++   +L       S          R   + +    +        K    +  I +   
Sbjct: 413 KVNKESLLSYKFNGLSSRYEAGTDRDR-ILKRLDLVYELVELYKTGKHNEFL-RITKFKI 470

Query: 494 IAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQ-NSYSSLQELIS 552
            +         + ++    G    I R      +   E ++         +         
Sbjct: 471 TSSKDKIS--LSNVMTEISGDDITIGRVIELAEEH--ELISKDDLFTNFINNKGYYLWSR 526

Query: 553 ELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSL 612
                      +       V ++T H  KG E   V ++   +  ++  +   +      
Sbjct: 527 LKIMPFQEYVNSIDYLREYVSVITQHKVKGSEYENVLVL-LDNGKWNQYNFDTLFG---- 581

Query: 613 NDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS 671
                                       ++ Q    RL YV +TRA   LI+   SN  
Sbjct: 582 -----------------------KGSSNENVQNRTKRLFYVAITRAMKNLIVYMPSNDR 617


>gi|315165608|gb|EFU09625.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
          Length = 271

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 77/207 (37%), Gaps = 25/207 (12%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       +  +D +    G  +H   +    + E  +K   +   +        K
Sbjct: 38  EAAALAKLKGEWTPDNDPKALLVGNYVHSYFES-PEIHEAFKKENKSKMFSSRKPFGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +              EV V+G+I       +  G+ID +++ ++  +
Sbjct: 97  DFQIAEQMIERLKQEEAFLNIY--QGKKEVIVTGEIV----GAMWKGKIDCLNLEEK--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNKSLVCLLIYV-- 927
             + KT    H  +  E +           ++ Q+++Y ++L+  Y +K+ + L+  V  
Sbjct: 149 FVDIKTTKDIHEKKWDERLNRKANFIERFGYVLQMAVYCELLRQQY-DKNFLPLIAAVSK 207

Query: 928 ---SEPKVFIIPQNKLNKAFAEISTKI 951
              SE K+  + + K+     E+   I
Sbjct: 208 QTPSEAKLITLSEEKMIYELEELKENI 234


>gi|229595681|ref|XP_001015020.2| hypothetical protein TTHERM_00673500 [Tetrahymena thermophila]
 gi|225565744|gb|EAR94775.2| hypothetical protein TTHERM_00673500 [Tetrahymena thermophila
           SB210]
          Length = 786

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 13/92 (14%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPK- 235
              I+ DE QD + +Q+  +  L + +            +  VGD  Q+IY F G++ K 
Sbjct: 151 YKIIIFDEFQDINELQYSFL-LLFKKY--------GGSNIVVVGDVFQNIYQFRGSDQKY 201

Query: 236 RVLREKRINQKRATNAGQKFSII---ELPLSF 264
              +  +  Q    N  ++   I    L ++F
Sbjct: 202 LSHQINQDIQSINQNLKKRDQKIIDLSLSINF 233


>gi|254426305|ref|ZP_05040021.1| hypothetical protein S7335_987 [Synechococcus sp. PCC 7335]
 gi|196187719|gb|EDX82685.1| hypothetical protein S7335_987 [Synechococcus sp. PCC 7335]
          Length = 623

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/327 (9%), Positives = 82/327 (25%), Gaps = 60/327 (18%)

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
             +   +++DE  D +    E ++ + +        + +  +L  + D+ Q++YS     
Sbjct: 356 QGQYGAVMVDEAHDFAP---EWLKLVAQM------VNPATDSLLVLYDDAQNLYS----- 401

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                R  R    ++     +     L L++R+TA +L +  +            ++   
Sbjct: 402 ----KRASRQFSFKSLGIKAQGRTTILKLNYRNTAQVLRLAYEFAKEMMPPTSSVDEDRP 457

Query: 294 TIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI 353
                               +V     +  P+ E                     IA   
Sbjct: 458 ------------------PLIVPDSAGREGPEPELVKCAN--------YKAEIAYIAQRA 491

Query: 354 SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILT 413
             +  +           I   ++ V+ R       +            I V   ++    
Sbjct: 492 QALHESG----------IPWYEMAVVYRTN----WMGEQALAELQQAGIPVAWLNQNS-- 535

Query: 414 DHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKF 473
                  L    + +           ++  P   F  +    +  +            + 
Sbjct: 536 SSRNYDPLCPSVKLMTMHSSKGLEFPVVFIPGLGFLPNRTGDVGDEARLLYVAMTRAIER 595

Query: 474 ANCGISKFQHVIKYIHELIHIAQFCSP 500
                 +    ++ + E        S 
Sbjct: 596 LMLTGDRRSEFVERLKEAAQRTAITSI 622


>gi|168334043|ref|ZP_02692262.1| ATP-dependent nuclease subunit B [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 1100

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 71/653 (10%), Positives = 160/653 (24%), Gaps = 135/653 (20%)

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                 +A  I+  +  DT          +  +I ++     +  L       +   Y I
Sbjct: 293 ESEIELVAQNITRFVRDDT---------YRYNEIAIIT---GNLNLYRSHLTTVLGQYDI 340

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF---------------- 446
               ++   +  + A+  ++ L   I    +  + +  LKS +                 
Sbjct: 341 PYFLDETKTIQANPAVNFILNLLEVITQHWNLTAILSFLKSGILTDFADEDIDYLENYLY 400

Query: 447 --NFSED-------------DIFKICTQRHETETVYEYIQKFANCGISK---------FQ 482
               +                +      R  +  +    +  A+    K           
Sbjct: 401 EHGINYKNKWLEXWEEETDSTLINDLRTRVASIILGIEQKIIAHKHRGKILTSNLCRILY 460

Query: 483 HVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQN 542
             +  I+    I             L                ++D+LD  ++       N
Sbjct: 461 DFLVEINFANTIRWESKSESEIEHTLSKNFNLALEYKHIYQTILDILDRLVDIL----GN 516

Query: 543 SYSSLQELISELEQ-YPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
            Y ++    S L   +         A  +++ +  +   +  +  +VFL+     VF   
Sbjct: 517 QYVNIATFKSILTTCFKHEKVGTIPATQDQILVGEIPRTRLPKQKIVFLIGLNEGVFPAN 576

Query: 602 HIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQ 661
            I                       +  N+    I      ++ E    +Y  + + S  
Sbjct: 577 PINDSLFSDMDLTANLF-------NANPNLYELFIYSNLYGSELE----IYSTLIKPSRY 625

Query: 662 LIICKHSNTSNEKKSNQRTWYDMV-YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPE 720
           L         + K +     +  +                 + I   +           +
Sbjct: 626 LFASYSMGDDSGKITRPSIIFTRLKRMFTMYAPSTTATTFADQIYTSKQAIIALGRAIKQ 685

Query: 721 NTPLEREETIKQLMDEQKIPKKL-------------FSPIKNDINEPYILN-------PS 760
           N  +   +   +      +  +                  K   +    L         S
Sbjct: 686 NAGIATLDDSYKYALMWYMQHQPDAIVQTVNGLFFTNQQDKLQTDIAKKLYSNNQVTTVS 745

Query: 761 TIDTKGKTN-----------LESLLSDNQTFNRGLIIHKLLQVIF-----------TLPE 798
            I+   +              E  L   +T + G I H +L++             T+  
Sbjct: 746 RIEKFRRCPCAYFIEYGLLASERKLFKFRTPDIGTIFHSVLEIYPKLLQAAGSTWTTITP 805

Query: 799 HKRKNFI-----TSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTA-------MSCDSY 846
             ++  +      S    N         K L   I  +    +   A            Y
Sbjct: 806 DAQQQLVATAVSESMLQNNKLKIKNGHTKYLTKRIETMSNRAITAMASQLKCGKFVPAEY 865

Query: 847 SEVSV------SGKINCPKKDIIISGRIDQISI----SQQNIF-IFEYKTHHH 888
            E         + +I+  +  + ++G ID++             I +YK+ H 
Sbjct: 866 -EYKFNDAALPAIEIDLGETTLRLTGTIDRVDAYLTPDGDTYIKIIDYKSGHT 917


>gi|327330590|gb|EGE72336.1| putative helicase protein [Propionibacterium acnes HL097PA1]
          Length = 740

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 20/104 (19%)

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
                H+L+DE QD S +QW +I                  +   VGD  QS +      
Sbjct: 501 RDTFAHVLVDEAQDISPMQWRMI-----------GRRGRQASWTIVGDPAQSAFP----- 544

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
                + +    +   N         L  ++RS A++  +   V
Sbjct: 545 --HPNQTRAAFDELVGN--SPSRTFTLTKNYRSPAEVFDLAADV 584


>gi|91788135|ref|YP_549087.1| exonuclease-like protein [Polaromonas sp. JS666]
 gi|91697360|gb|ABE44189.1| RecB family exonuclease-like protein [Polaromonas sp. JS666]
          Length = 856

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 63/547 (11%), Positives = 140/547 (25%), Gaps = 57/547 (10%)

Query: 384 KDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKS 443
               L+T     +     I++     + L+   A   LM L R +       + +  LK+
Sbjct: 275 AQDRLLTRRVGAMLAGRGIAMRDETGWKLSTTRAAASLMGLLRAMPWDASTDAVLDWLKN 334

Query: 444 PLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSP--- 500
                  +        R      +  +        +  Q +   +  L        P   
Sbjct: 335 APGVSPGEVTAAETELRKAGLRAWRDLPATPQPAFAATQQLALQVDALRKALGRTRPLAS 394

Query: 501 --HDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYP 558
              D    +  A +     I   G  V++VL          +     +L    S + Q  
Sbjct: 395 WLRDLRAALQSAGQWDALEIDNAGQTVLEVLRLHEGAEAEFDSAPTMALASFTSWVNQAL 454

Query: 559 PTIKRAHS-ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
              K +       +V I+ +    G     V L                   P   +  G
Sbjct: 455 EGGKFSPEHPQGEQVVILPLAQLLGRPMQAVVLPGCDEIRLPVSPEPAGLWTPGQREVLG 514

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
           +P     + +       +++                        + +   ++ + E    
Sbjct: 515 LPSRDMLASANRAAWHYVLQL---------------------PHVDLLWRTSEAGEHLIP 553

Query: 678 QRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQ 737
                +++     + +       +  +               E  P+ R       +   
Sbjct: 554 SGFVQELLLAQAGHGDSPALATDSRRLRPVAIQPTPRPMPTGEALPVTR-------LSAS 606

Query: 738 KIPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI---- 793
                   P +        L  S            L S+    + G  +H +L+      
Sbjct: 607 AYEDLRRCPYRFFALRQLRLQESG----------ELDSELDKRDFGNWLHSVLRYFHEAL 656

Query: 794 ---FTLPEHKRKNFITSYCTKNAKLWPAKEYKNL-LLSITRLLENPMMTTA--MSCDSYS 847
               T     R+  I     +  +     + + L   +I   +    +        +   
Sbjct: 657 KAAPTPELSAREAMINLAAERVTQAMALSDSEFLPFAAIWPRVREGYLAWLTDHEAEGAR 716

Query: 848 EVSVSGKINCPKKDIIISGRIDQISI-SQQNIFIFEYKTHHHVPQEIEHIPYTHI-AQLS 905
                 +   P   + + G++D+I   +  +  + +YKT       +E I       QL+
Sbjct: 717 FEEAEAEREMPLGKLQLIGKLDRIDRQADGHTLLIDYKT-EPRTVTVERIKDGQEDTQLA 775

Query: 906 IYEKILK 912
            Y  ++ 
Sbjct: 776 FYAALMH 782


>gi|319788985|ref|YP_004150618.1| hypothetical protein Theam_0003 [Thermovibrio ammonificans HB-1]
 gi|317113487|gb|ADU95977.1| hypothetical protein Theam_0003 [Thermovibrio ammonificans HB-1]
          Length = 270

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 56/190 (29%), Gaps = 30/190 (15%)

Query: 751 INEPYILNPSTIDTKGKTNLE---------SLLSDNQTFNRGLIIHKLLQVIFTLPEHKR 801
           I      + S +    +   E           L        G  +H +L+        +R
Sbjct: 13  IEHLRPWSFSKVQKAKRCQYEFFFRYVQKLEPLERADFLVLGSGVHFVLENALNAVFLRR 72

Query: 802 KNFITSYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS-----------EVS 850
           K          A+L+  +E    L  I +    P +   ++                E++
Sbjct: 73  KPLSKELLLHYARLYKEQEPLADLNRIGQFF--PNILKFVNGQLRRVDRGELKFWELELA 130

Query: 851 VSGKI---NCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIY 907
           V  ++         + + G++D +    + ++I ++KT                 QL  Y
Sbjct: 131 VDRELRCVPYDSGGVFLRGKLDFLFSKGETLYIVDHKTSRS-----HDFDNRVKTQLRWY 185

Query: 908 EKILKDSYPN 917
             +    +P 
Sbjct: 186 ALLAAVKFPQ 195


>gi|253568130|ref|ZP_04845541.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842203|gb|EES70283.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 954

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 75/582 (12%), Positives = 150/582 (25%), Gaps = 98/582 (16%)

Query: 404 VVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDI-FKICTQRHE 462
           V     F L        + A      +           ++    F+ + +   +      
Sbjct: 339 VNITMGFPLAQTPVYSFINAAMELQTNGY---------RTATGRFTYETVSAILKHPYTR 389

Query: 463 TETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFG 522
             ++     +      ++F  +   +     + +  +P      +        + IS   
Sbjct: 390 QLSINAEPLERELTKTNRFYPLPSELKMDDFLIKLFTPRSGIKELCDYLTELIKDISLLY 449

Query: 523 NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRA-----------------H 565
            E  +  D F      +   SY+++  L S +E     ++                   H
Sbjct: 450 REESEYNDIFNQLYRESLFKSYTTINRLYSLIETGELNVRTDTLRRLVSKVLTASNIPFH 509

Query: 566 SANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQS 625
                 +++M V   + L+   + L+                I  +L    G+     ++
Sbjct: 510 GEPAIGMQVMGVLETRNLDFRNIILLSLNEGQLPKSGGDSSFIPYNLRKAFGMTTIEHKN 569

Query: 626 KSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMV 685
                         +   + E   LLY                   N   +      +  
Sbjct: 570 AV------YAYYFYRLIQRAENITLLY-------------------NTSSNGLNRGEESR 604

Query: 686 YDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS 745
           +      E   KI                 +        ER        + Q     + S
Sbjct: 605 FMLQLLVEGPHKITREYLEAGQSPQGTTDISIEKTPEVFERLRCSYDCSNPQSY---ILS 661

Query: 746 PIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQV----IFTLPEHKR 801
           P   +      L             + + ++  +   G I H   Q+    +    +  +
Sbjct: 662 PSALNAYLDCRLKFYYRYVARLKAPDEVSAEIDSALFGTIFHLSAQLAYTDLTANRKIIQ 721

Query: 802 KNFITSYCTKNAKL--------------WPAKEYKN-----------LLLSITRLLENPM 836
           K  +        KL               PA E              ++  + +LL N  
Sbjct: 722 KEELERLLRNEVKLQNYVDLAFKQELFKVPADEKPEYNGVQLINSKVIVSYLKQLLRN-D 780

Query: 837 MTTAMSCDSYSEVSVSGKINCPKKDIIIS----GRIDQISISQQNIFIFEYKTHHHV--P 890
           +  A       E  V+ KI        I+    G ID++      + I +YKT      P
Sbjct: 781 LQYAPFEMVAMEKPVAEKITIQTGQGPITFRLGGTIDRMDAKDTTLRIVDYKTGGSPKTP 840

Query: 891 QEIEHI------PYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             IE +         +I Q  +Y  I+      K +   L+Y
Sbjct: 841 ANIEQLFTPSETRPNYIFQTFLYAAIMSRQQSLK-VAPSLLY 881


>gi|269838113|ref|YP_003320341.1| ATP-dependent nuclease subunit B-like protein [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787376|gb|ACZ39519.1| ATP-dependent nuclease subunit B-like protein [Sphaerobacter
           thermophilus DSM 20745]
          Length = 1066

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 65/611 (10%), Positives = 149/611 (24%), Gaps = 92/611 (15%)

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
            +PL          +  +     +R+   +      L      +  ++  +S + +L   
Sbjct: 358 GSPLRRAAVMEFITETHLPDATAERYGPVEPALWDALSREAGIVEGRDQWISRLSLLHQA 417

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFF 504
                  +  +   +  E         +  +      +     +      A + +  D+ 
Sbjct: 418 KRRAVLGEEQEDPERIDERLRTELEAIERLSQF---IKDFADQLEARPEHASWQAHLDYL 474

Query: 505 TLILGAKKGRQQFISRFGNEVIDVLDEFLNFTL--RNEQNSYSSLQELISELEQYPPTIK 562
              L      +          +  LD  +      R ++     L+   +     P  + 
Sbjct: 475 RD-LAVTYVDRAEPLLDLLAPLARLDALVPQVSFVRFQRTVRRVLERADAGTVLGPDEVP 533

Query: 563 RAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWI 622
                  + V ++ V + + L    V ++    + F     +   ++             
Sbjct: 534 PNGHFGRDGVAVLDVFSLRFLRLRAVAVLGLAERSFPAPPRQDALLLDRERVRLSAAGRW 593

Query: 623 PQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTW- 681
                      + +             LL    +    + I+  H   +  +    R   
Sbjct: 594 EIPLRAAGADPEPLLFALAVAAAGERLLLSYPRSGGDGRTILPSHFFRAAAEALTGRRVG 653

Query: 682 -YDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIP 740
             D+   S     RV   +   +  ++   A E+        P E  E + +L       
Sbjct: 654 VEDIDSLSRELFTRVPTNRFGAATPEEALTAGEYDRTLLALLPQEGAECLARLHPPFARA 713

Query: 741 ---------------------KKLFSPIKNDINEPYILNPSTIDTKGKTNL--------- 770
                                +   + +         ++PS ++T               
Sbjct: 714 RAAWEARWRGRELTTYDGVLGEAAAAAVARRAGLRRAISPSRLETYATCPFRFFLSYLLR 773

Query: 771 ------ESLLSDNQTFNRGLIIHKLLQVI------FTLPEHKRKNFITSYCTKNA----- 813
                   LL   ++  RG ++H +LQ           P   R+    +     A     
Sbjct: 774 LEPVEEPDLLERIESLERGALVHDVLQRFLTECGANDPPSRVRREAHLARLRAIAEEECA 833

Query: 814 ----------KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS----------- 852
                      L    + + +L  +    +  +       D+    +             
Sbjct: 834 DREQRGLVGYPLLWQVDRRAILEDLITWYDREVAER---DDALRPGAFELRFGPKWTHDR 890

Query: 853 ----------GKINCPKKDIIISGRIDQISISQQN--IFIFEYKTHHHVPQEIEHIPYTH 900
                       +      +   GRID+I  S       + +YKT        +      
Sbjct: 891 EDSPLSTDDPVPLQADGLTLRFQGRIDRIDWSPDRSAFRVVDYKTGKCPGHHKDDRLAGG 950

Query: 901 IA-QLSIYEKI 910
            A QL IY   
Sbjct: 951 RALQLPIYLLA 961


>gi|226940710|ref|YP_002795784.1| RecB [Laribacter hongkongensis HLHK9]
 gi|226715637|gb|ACO74775.1| RecB [Laribacter hongkongensis HLHK9]
          Length = 271

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 48/181 (26%), Gaps = 24/181 (13%)

Query: 756 ILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIH---KLL--QVIFTLPEHKRK 802
            +  S++                   L  +     G  +H    L     +   P    +
Sbjct: 6   TIRASSLAELFDCPARWAAKHLLGMRLPSSGAARLGTAVHAGTALFDQSRLDGHPLTADE 65

Query: 803 NFIT--------SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGK 854
                            N ++            I   L             Y+ V VS +
Sbjct: 66  AAGALVDALHGKDDAEGNGEVDWGDTDPRSAEKIGLALHARYCADIAPHQDYTGVEVSCE 125

Query: 855 -INCPKKDIIISGRIDQISISQQNIF-IFEYKT-HHHVPQEIEHIPYTHIAQLSIYEKIL 911
            +      I ++G  D+I +       I + KT    V  +   +   H  Q+ +YE I 
Sbjct: 126 RLEITDLGIALTGTTDRIRMLPDGQLGIVDLKTGGRAVGSDGTAVTQGHGPQMGVYELIA 185

Query: 912 K 912
           +
Sbjct: 186 E 186


>gi|167560982|ref|ZP_02353898.1| putative DNA helicase [Burkholderia oklahomensis EO147]
          Length = 692

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 87/284 (30%), Gaps = 40/284 (14%)

Query: 1   LKNRFGLSLNESYELIY--KDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT----LQ 54
           L     L+  +    +        L      ++ + +  + + G    +   +     L 
Sbjct: 264 LHRAVHLARKDEDARVLLCTFSDTLANALRGNLYRLIWNTPKLGERIDVAAMEAIGIRLY 323

Query: 55  QASQTQCIEERFSLLSSFFLTQKFTPQKNIITQEINKKSPDLKEKLKKSQ-DEFIKIRDR 113
                +        +S+    +    Q + +         +  + +   Q D +   RD 
Sbjct: 324 SVEFGKPALAGRDEISTLL--RAAAAQVDGLKANAAFLLSEWDDVVDTWQVDSWEAYRDA 381

Query: 114 FNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKI 173
               +  +   A   L   + A  +E  K+   +          ++  K  ++  +  + 
Sbjct: 382 KRLGRKTRLPEAQRALYWQVFAQVKEQLKQTDRI-------TAAEMFSK--LAEVMLKRK 432

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
               ++I++DE QD S+ Q   + ++  +             LF  GD  Q I       
Sbjct: 433 HPVFDYIVVDEAQDISVQQLRFLAAIAGN---------RANALFFAGDLGQRI------- 476

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKV 277
                  +     +      +     L +++R++  I T  D++
Sbjct: 477 ------FQTPFSWKHLGVDVRGRSRTLHINYRTSHQIRTQADRL 514


>gi|301607764|ref|XP_002933468.1| PREDICTED: TPR and ankyrin repeat-containing protein 1-like [Xenopus
            (Silurana) tropicalis]
          Length = 2877

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 23/168 (13%)

Query: 132  YLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLI 191
             L + YE+ K K    D ED++ + +  L K +   W        I+ +  DE+QD +  
Sbjct: 1315 RLFSIYEQIKSKKGYFDEEDVLYHLSCQLSKLEELPW-------SIHELYGDEIQDFTQA 1367

Query: 192  QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK---RVLREKRINQ 245
            +  ++              + P ++F  GD  QSI    SF  ++ +       +   N 
Sbjct: 1368 ELSLLMRCI----------NDPNSMFLTGDTAQSIMKGVSFRFSDLRSLFYYANKNAKND 1417

Query: 246  KRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
             +     +   I +L  ++RS + IL +   V  + +     S D   
Sbjct: 1418 GKKCVVRKPKRIYQLYQNYRSHSGILHLASGVVDLLQYFFPESFDRLP 1465


>gi|160899117|ref|YP_001564699.1| NERD domain-containing protein [Delftia acidovorans SPH-1]
 gi|160364701|gb|ABX36314.1| NERD domain protein [Delftia acidovorans SPH-1]
          Length = 601

 Score = 58.0 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 75/275 (27%), Gaps = 62/275 (22%)

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F+ ++      + ++ + +        +   +++DE  D    Q E ++ +T+       
Sbjct: 329 FDQMVEFVIRGVDRQQIPS-------GQYQAVMVDEGHDF---QPEWLKLVTQM------ 372

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
                 +L  + D  Q+IY    A         R    ++           L +++R+T 
Sbjct: 373 VDPETNSLLILYDSAQNIYGKSKA---------RGFSFKSVGIQASGRTTILKINYRNTR 423

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL + ++V                    + +     G       V      +   +   
Sbjct: 424 QILQIANRV---------------AAEFLQPNAQDDDGV----PLVQPISCGREGQEPLI 464

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
                                   I+ ++       +         D+ +L R       
Sbjct: 465 VRLPSLRDE------------PAKIAELLAAAHQEGHA------WGDMAILCRDHDSMNQ 506

Query: 389 ITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMA 423
                   K  +++     D   L D + +  + A
Sbjct: 507 CALALGRRKLPHRVRHRSGDFDPLADTIKVMTMHA 541


>gi|325953681|ref|YP_004237341.1| hypothetical protein Weevi_0035 [Weeksella virosa DSM 16922]
 gi|323436299|gb|ADX66763.1| hypothetical protein Weevi_0035 [Weeksella virosa DSM 16922]
          Length = 896

 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 60/609 (9%), Positives = 162/609 (26%), Gaps = 104/609 (17%)

Query: 350 AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDR 409
           A  ++ ++   T        +I A ++L+          +  +         I       
Sbjct: 275 AKYVNELLRHKTEEELKNTALILADEMLLPALLNAMPNNVKHI----NISMGIP------ 324

Query: 410 FILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEY 469
             L +        ++    +++E   +        + +  E+   KI   +++ + +   
Sbjct: 325 --LKNIPLAHFFKSILELHMNREKLGNSTAFYFKNILDILENPSLKIFHCKNDEQLIA-- 380

Query: 470 IQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVL 529
                    +K    +K++ + +  + F         +       ++FI+          
Sbjct: 381 ----IIHSQNKVFSSVKFLQDFLIDSIFSPLFSRPNNLNDLLSIIEKFIADLFVNPKIDN 436

Query: 530 DEFLNFTLRNEQ------NSYSSLQELISE-------LEQYPPTIKRAHSANHNEVRIMT 576
           D    +    +Q         ++L+   S         +              + +++M 
Sbjct: 437 DLMREYLFYFQQIFTSLRTEIATLKASTSFRTLYLLYQKLLQSETLSFIGEPLDGLQVMG 496

Query: 577 VHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLI 636
           +   + +    + +      +          I   +  + G+  +       + I +   
Sbjct: 497 LLETRLINFDHLIMTSVNDGILPLGRQNNTFIPYDIRKEKGLNTFT----ENDAIYAYH- 551

Query: 637 KHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVK 696
                          Y  ++RA   +    ++++       +  + + +           
Sbjct: 552 --------------FYRLLSRAK-TVHFLYNTDSDAMGSGEKSRFLEQIAY--------- 587

Query: 697 KIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLF----SPIKNDIN 752
                        +   ++  H E  P  +    K     +K+         SP      
Sbjct: 588 --------ESSHEVVINYAKPHFEIIPKNKLVIPKTPKTMEKLIDWAENIGISPTLLSTY 639

Query: 753 EPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQ---------VIFTLPEHKRKN 803
               +             E           G I+H  L+          +      + KN
Sbjct: 640 IRNPIEFYERVILSNDETEEAEETISAKTLGKIVHGTLETLYQDYLNIALHEKDFEEIKN 699

Query: 804 FITSYCTKNAKLWPAK-EYKN----LLLSITRLLENPMMTT---AMSCDSYSEVSVSGKI 855
            +      N K    + E       L+ ++ R +   ++         +    + +  K 
Sbjct: 700 KVDEVLEANLKKEYKEGELDRGENLLIKNVARKIVEGVLQRDKKIAQENELVILFLEKKY 759

Query: 856 ----NCPKKDIIISGRIDQISISQQNIFIFEYKTHHH-----VPQEIEHI-----PYTHI 901
               +   + + + G ID+I        I +YKT           +IE +        ++
Sbjct: 760 NFLMDIGDRKVKVKGFIDRIDSVNGTKRIIDYKTGKIDNLNLASDKIEEVFEMDNKAKYL 819

Query: 902 AQLSIYEKI 910
            QL  Y  +
Sbjct: 820 -QLITYAHL 827


>gi|262381670|ref|ZP_06074808.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296847|gb|EEY84777.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 959

 Score = 58.0 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 136/437 (31%), Gaps = 76/437 (17%)

Query: 547 LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +      L++   TI         + ++IM V   + L+   + ++     +F  +    
Sbjct: 501 IDTFFRLLKRVTDTITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAAN 560

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             I  +L    G+P +      ++++ +                  Y  + RAS   ++ 
Sbjct: 561 SFIPYNLRRGFGLPTYEH----QDSVWAYH---------------FYRLIERASHVSLLY 601

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              +   +     R  + + Y           +   +            S+  P     +
Sbjct: 602 DTRSNGLQTGEVSRFVHQLHYHYEVPMRDKLVVYNVS------------SSKTPPLAVPK 649

Query: 726 REETIKQLMDEQK--IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
           RE+ +++L   +K        S I   ++ P     S ++   +    S   ++     G
Sbjct: 650 REDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSVVEGIREEEEVSETIESD--VFG 707

Query: 784 LIIHKLLQVI----------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI--TRL 831
            I+HK+++ +            L +  RK+                    ++ S+     
Sbjct: 708 SILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIARAFASEFFKTEVVRSLTGQNY 767

Query: 832 LENPMMTT----AMSCDSY--------SEVSVSGKINCPK-KDIIISGRIDQISISQQNI 878
           L   M+       +  D          SE  ++G I+     +I + G ID++      I
Sbjct: 768 LIGEMIRKYVEKILERDGKLTPFVYIESERKINGLISLSDHSEIRLKGFIDRVDEVLDAI 827

Query: 879 FIFEYKTHHHVP---------QEIEHIPYTHIAQL----SIYEKILKDSYPNKSLVCLLI 925
            I +YK+               + E      + Q+     +Y  + ++    K++   + 
Sbjct: 828 RIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMYCWMYAHLTEN--KGKTIQPGIY 885

Query: 926 YVSEPKVFIIPQNKLNK 942
           YV          +  ++
Sbjct: 886 YVRSLFADPFDPSVYHR 902


>gi|325923982|ref|ZP_08185570.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Xanthomonas gardneri ATCC 19865]
 gi|325545537|gb|EGD16803.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease
           domain-containing [Xanthomonas gardneri ATCC 19865]
          Length = 184

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 12/171 (7%)

Query: 192 QWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNA 251
           QW +  ++  +  + +        LF +GD KQ+IY F G + +  L            A
Sbjct: 23  QWAIFSNVFGEGPLARAADL-EPALFLIGDPKQAIYGFRGGDVRTYL----------AAA 71

Query: 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLW 311
                   L  +FRS   +L  +D +++    ++    D       +         +Q  
Sbjct: 72  VTAELAPPLSHNFRSRPGVLAAIDALYAQAGYSEAFLTDGIAFHPVQPGTKRVDADLQRD 131

Query: 312 EQVVSQHDSQCNPQQESWTSYFDSLPQESSASILA-RRIAYTISNMIGTDT 361
                       P+    +           A  LA       I   +    
Sbjct: 132 GNAAPALTLWRAPEPPLPSKGKPKPWSAGRARELATAACVAAIRGWLAGGR 182


>gi|66044699|ref|YP_234540.1| hypothetical protein Psyr_1452 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255406|gb|AAY36502.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|330900186|gb|EGH31605.1| hypothetical protein PSYJA_22573 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 487

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 24/149 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++  T              T   VGD  Q +Y F GA
Sbjct: 187 LSQRFGAILLDEGQDVNPVIANLVQIQT-------------ITQVTVGDRHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    +  +K             L  SFR    +  V + + S       L     
Sbjct: 234 VDALNSPAMKDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            T+  R+          L   V    ++ 
Sbjct: 283 PTLVKRALPDDLPHRTYLHRTVSGVIENA 311


>gi|303241339|ref|ZP_07327843.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
 gi|302591072|gb|EFL60816.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2]
          Length = 696

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 84/310 (27%), Gaps = 36/310 (11%)

Query: 102 KSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLK 161
           +      +      T +  +           +   Y    K+  V D    +     +L+
Sbjct: 374 QEAFTLEQYIKASRTGRGTRLDRKKRIQIWQVFEEYISLMKERQVRDVNTAMYECRMILE 433

Query: 162 KRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGD 221
           K             +   I++DE QD S+  ++++RS+  +             +F VGD
Sbjct: 434 KNHEGV--------KYKSIIVDEGQDLSMNAYKLLRSIAGE--------EHENDIFIVGD 477

Query: 222 EKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIP 281
             Q IY       K  +  +                  L +++R+T +I       F+  
Sbjct: 478 SHQRIYKNRAVLSKAGINVR-------------GRSSYLKINYRTTEEIRKYA---FAFL 521

Query: 282 ENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESS 341
           +       D       +   +      ++     +  +     ++    S      ++  
Sbjct: 522 KGVSFDDLDEGYDDGKQCQSLTHGTKPEVVNFNSAAEEFGYILERVKNLSEQGIELKDIC 581

Query: 342 AS-ILARRIAYTISNMIGTDTIFSNGKKRVI---QAKDILVLVRKRKDTPLITFLTRFLK 397
                 + I   IS            K+  +       I V    R       ++     
Sbjct: 582 IVGRTHKLIDDYISQFTAAGIKTYEIKRSKLDDRTFDGIRVATMHRVKGLEFQYVFVAGV 641

Query: 398 NDYKISVVGN 407
           N   + +   
Sbjct: 642 NQRVLPLATA 651


>gi|331660386|ref|ZP_08361321.1| putative DNA helicase [Escherichia coli TA206]
 gi|331052653|gb|EGI24689.1| putative DNA helicase [Escherichia coli TA206]
          Length = 346

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 64/243 (26%), Gaps = 47/243 (19%)

Query: 76  QKFTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNA 135
              + ++  +   I +                  + +     +        L LA  L  
Sbjct: 127 GALSLRQWPLAAAIRETLQAFMNSADT------TLSEVHVRARPPLRAAEVLPLAVRLWQ 180

Query: 136 HYEEAKKKNCVLDF---EDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
              +        DF    DL +     L + D        +  + + IL DE QD S + 
Sbjct: 181 RMCDRSD-----DFPVVHDLYLKLYQ-LSQPD--------LSAKYDEILFDEAQDASPVI 226

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAG 252
            +++                  TL  VGD  Q IY F GA                + + 
Sbjct: 227 SDLVLRHRG-------------TLVMVGDPHQQIYRFRGAV-----------DALNSPSL 262

Query: 253 QKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWE 312
                + L  SFR    +  V + V ++    + +                      L  
Sbjct: 263 ATADRLWLTGSFRFGPCVADVANAVLALDGETKKICGLGGDDRLLLKPEKDMPHCAVLCR 322

Query: 313 QVV 315
            V 
Sbjct: 323 TVA 325


>gi|13095818|ref|NP_076708.1| Orf13 [Lactococcus phage bIL309]
 gi|15672429|ref|NP_266603.1| prophage pi1 protein 12 [Lactococcus lactis subsp. lactis Il1403]
 gi|12723325|gb|AAK04545.1|AE006281_11 prophage pi1 protein 12 [Lactococcus lactis subsp. lactis Il1403]
 gi|12831007|gb|AAK08361.1|AF323670_13 Orf13 [Lactococcus phage bIL309]
          Length = 258

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 78/228 (34%), Gaps = 48/228 (21%)

Query: 755 YILNPSTIDTKGKTNLESLL--------------SDNQTFNRGLIIHKLLQVIFTLPEHK 800
             L+ S++        E++               S  +  N G  +HK  +      +  
Sbjct: 3   KRLSFSSLKAFSDCEAEAVAVMAGDWDRQATFSPSTIEAMNAGSYVHKYFE----SNKAL 58

Query: 801 RKNFITSYCTKNAKLWPAKEYKNLLLSITRLLEN-PMMTTAMSCDSYSEVSVSGKINCPK 859
            +  +        K    K    +   + + L++ P+  T        E+ + GKI    
Sbjct: 59  EEFKLEHESDMFTKKGSLKSQFQIAEKMVQTLDHDPLFKTIY--QGVKELEIFGKIQ--- 113

Query: 860 KDIIISGRIDQISISQQNIFIFEYKT--HHHVPQEIEHI---------PYTHIAQLSIYE 908
             I   G +D +++ +      + KT       +E   I            ++ Q++IY+
Sbjct: 114 -GIEFHGFLDCLNLERN--IFIDIKTIRGSIRDKEWSEIEYRRVSWIKARKYLWQMAIYQ 170

Query: 909 KILKDSYPNKSLVCLL---IYVSEPKVFI------IPQNKLNKAFAEI 947
           +IL+    ++ +   +   IY    + F       IPQ  L+ +  E+
Sbjct: 171 EILRQ-SDDEKIGKNISPVIYAVTKETFPDSAGITIPQEWLDDSLDEV 217


>gi|269987047|gb|EEZ93322.1| ATP-dependent DNA helicase [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 156

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 848 EVSVSGKINCPKKDIIISGRIDQIS--ISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLS 905
           E+ +       K D+ +S ++D +     +    I ++KT     Q        H  QL+
Sbjct: 3   EMPLEAVFPDIKSDLKVSAKLDAVFFNEKKNKFLIIDFKTDKSNDQG-----SKHRRQLA 57

Query: 906 IYEK--ILKDSYPNKSLVCLLIY 926
           +Y K   ++ +   K +   + Y
Sbjct: 58  LYRKLFAIEKNIDEKEIDTAIAY 80


>gi|28868099|ref|NP_790718.1| hypothetical protein PSPTO_0879 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28851335|gb|AAO54413.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331018779|gb|EGH98835.1| hypothetical protein PLA106_22308 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 485

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++                 T   VGD  Q +Y F GA
Sbjct: 187 LSQRFGAILLDEGQDVNPVIANLVQI-------------QKITQVTVGDRHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    +  +K             L  SFR    +  V + + S       L     
Sbjct: 234 VDALNSPAMKDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            T+  R+          L   V    ++ 
Sbjct: 283 PTLVKRALPEDLPHRTYLHRTVSGVIENA 311


>gi|118398068|ref|XP_001031364.1| hypothetical protein TTHERM_00827180 [Tetrahymena thermophila]
 gi|89285691|gb|EAR83701.1| hypothetical protein TTHERM_00827180 [Tetrahymena thermophila
           SB210]
          Length = 1793

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 78/237 (32%), Gaps = 27/237 (11%)

Query: 133 LNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQ 192
           +   Y++ K      D  D +I    +LK+  +     +  D   ++I IDEVQD + + 
Sbjct: 385 ICQMYQKWKISKKYFDLNDQVIY---ILKQ--IFQKRYFSNDGFFHYIFIDEVQDLNCL- 438

Query: 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS---FHGAEPKRVLREK---RINQK 246
             +I  LT           + + +F  GD  Q+I     F   E K   +++        
Sbjct: 439 --IIYLLT---------IITEQNIFMGGDTAQTISQEIAFRFTELKAFFQKRFMIEDFPS 487

Query: 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSED---STTTIRHRSSRIG 303
                 Q     +L  +FR    I  + + +  + E     S D      + +     + 
Sbjct: 488 TLVLQQQLVEE-QLLKNFRCHQQITAINNTLIRLLELLFPTSIDILQQEISEKQGPKPLL 546

Query: 304 QVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTD 360
                 L + +        N Q+     +F    +  +  +        I  ++  D
Sbjct: 547 IHDVNHLKKFLFQDIKLSENDQKGDLDKHFGICDRLQAFLVQNDTEKEKIQKILDQD 603


>gi|295696732|ref|YP_003589970.1| ATP-dependent nuclease subunit B-like protein [Bacillus tusciae DSM
           2912]
 gi|295412334|gb|ADG06826.1| ATP-dependent nuclease subunit B-like protein [Bacillus tusciae DSM
           2912]
          Length = 1052

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 59/558 (10%), Positives = 144/558 (25%), Gaps = 85/558 (15%)

Query: 452 DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAK 511
           D+     +  E   ++    +    G+ +   + ++   L  + +               
Sbjct: 398 DLLPGERRELEDVLIWLAQVRDRVAGMPETGSLSEWADALEGLLEEMEVERALRRRARKA 457

Query: 512 KGRQQFISRFGNEVIDVLDEFLNFTLRNEQN----SYSSLQELISEL-EQYPPTIKRAHS 566
              +    R   E   VL   L      +         S  E    L E+          
Sbjct: 458 GSEEWAGIRQDLEAYAVLRAMLREWRETDSWVGWPGRCSRGEWARWLREELEGRRLIVRP 517

Query: 567 ANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSK 626
              + +R+++  TA  L+     + +    ++     ++  +   L D   +  +     
Sbjct: 518 GQEDGIRVVSPETAWVLDLEAAVVPEVNEGIWPPP-EREEGLAEVLYDVLKLRGYEWPRP 576

Query: 627 SRNNIVSDLIKHLKKSTQEEYNRLLYVGM-----TRASDQLIICKHSNTSNE-------- 673
           +      +       +T      L YV       +R  +QL                   
Sbjct: 577 AELRAQHEENLLRLLATPGIQVALTYVEAEGKLPSRILEQLWRSGQCLPGGGQELESVAG 636

Query: 674 --------KKSNQRTWYDMVYDSFHNDERVKKI---KLTNSINKDEWIAYEWSTHHPENT 722
                   +++     +  ++ ++     + ++        ++    ++  W     +  
Sbjct: 637 LPQESGDPREAGPPFAHVALWRAWEERMALDRVDGHPFDGPVDDTGPLSGRWRRLAAKAM 696

Query: 723 PLEREETIKQLMDEQKIPKKLFS-PIKNDINEPYILNPSTIDTKGKTNLESLL------- 774
             +  E  +    E ++             +E  + + S  +  G      LL       
Sbjct: 697 IEKLREGPEFSPWEGRLSSDFAQTEFGQRFSEDRVYSASMFNDYGTCPFRFLLRRVWKIE 756

Query: 775 ------SDNQTFNRGLIIHKLLQVIFTLPEHKRK-------------------------N 803
                         GL+ H++L  +F       +                          
Sbjct: 757 VGRGAREPLDALEAGLLYHRVLSGLFREVRDLAESGDGNLWLDIDRALGLLERRWGEEVQ 816

Query: 804 FITSYCTKNAKLWPAKEYKNLLLSITRL------------LENPMMTTAMSCDSYSEVSV 851
            +            + + + +   I +             L       A   +  S    
Sbjct: 817 ALEERLGLKEFPTWSLQRERMRNRIWQWVAYDWSQRRGSGLRPRYFEWAFGGEDDSSDPA 876

Query: 852 SGKINCPKKDIIISGRIDQISISQ-QNIFIFEYK-THHHVPQEIEHIPYTHIAQLSIYEK 909
           S       + ++  GR+D+I         +++YK T          I      QL +Y +
Sbjct: 877 SSPTPIAVEGLLFQGRVDRIDADAQGRFIVYDYKRTTGGGRHGKAAIAKGIDVQLPLYME 936

Query: 910 ILKD-SYPN-KSLVCLLI 925
           I++   YP+ + L     
Sbjct: 937 IVRQALYPDGEPLGAAYY 954


>gi|27228590|ref|NP_758640.1| putative helicase [Pseudomonas resinovorans]
 gi|219857012|ref|YP_002474044.1| putative helicase [Pseudomonas sp. CA10]
 gi|26106178|dbj|BAC41618.1| putative helicase [Pseudomonas resinovorans]
 gi|219688940|dbj|BAH10031.1| putative helicase [Pseudomonas putida]
          Length = 488

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 65/236 (27%), Gaps = 39/236 (16%)

Query: 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAE 233
               + IL DE QD++ +                      R +F VGD+ Q IY + GAE
Sbjct: 184 QLPYDVILFDEAQDSNPV------------TASLVAGQKARKIF-VGDKWQQIYRWRGAE 230

Query: 234 PKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
                +  +             + + L  SFR    I  V + +      A+ L      
Sbjct: 231 NALDTQIVQ-----------GAASMFLTNSFRFGPMIAGVANAILKQQGEARPLVGYGAR 279

Query: 294 TIRHRSSRIGQVGTVQLWE----QVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRI 349
                S   G      L       +++  D+  + Q   W    ++        +   ++
Sbjct: 280 DKVTTSLPSGCNHYTVLNRTVIGVIMTAIDAVSDGQVVYWNGGIEAYQISDLEDVYHLKV 339

Query: 350 --AYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKIS 403
                I N          G       +              +  + R LK    I 
Sbjct: 340 GRKDEIRNKRLFGQFSDFGGFAEAAEE---------SKDAEMNRMLRILKEHNDIP 386


>gi|256840087|ref|ZP_05545596.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739017|gb|EEU52342.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 959

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 136/437 (31%), Gaps = 76/437 (17%)

Query: 547 LQELISELEQYPPTIKRAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKK 605
           +      L++   TI         + ++IM V   + L+   + ++     +F  +    
Sbjct: 501 IDTFFRLLKRVTDTITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAAN 560

Query: 606 MHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIIC 665
             I  +L    G+P +      ++++ +                  Y  + RAS   ++ 
Sbjct: 561 SFIPYNLRRGFGLPTYEH----QDSVWAYH---------------FYRLIERASHVSLLY 601

Query: 666 KHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLE 725
              +   +     R  + + Y           +   +            S+  P     +
Sbjct: 602 DTRSNGLQTGEVSRFVHQLHYHYEVPMRDKLVVYNVS------------SSKTPPLAVPK 649

Query: 726 REETIKQLMDEQK--IPKKLFSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRG 783
           RE+ +++L   +K        S I   ++ P     S ++   +    S   ++     G
Sbjct: 650 REDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSVVEGIREEEEVSETIESD--VFG 707

Query: 784 LIIHKLLQVI----------FTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSI--TRL 831
            I+HK+++ +            L +  RK+                    ++ S+     
Sbjct: 708 SILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIARAFASEFFKTEVVRSLTGQNY 767

Query: 832 LENPMMTT----AMSCDSY--------SEVSVSGKINCPK-KDIIISGRIDQISISQQNI 878
           L   M+       +  D          SE  ++G I+     +I + G ID++      I
Sbjct: 768 LIGEMIRKYVEKILERDGKLTPFVYIESERKINGLISLSDHSEIRLKGFIDRVDEVLDAI 827

Query: 879 FIFEYKTHHHVP---------QEIEHIPYTHIAQL----SIYEKILKDSYPNKSLVCLLI 925
            I +YK+               + E      + Q+     +Y  + ++    K++   + 
Sbjct: 828 RIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMYCWMYAHLTEN--KGKTIQPGIY 885

Query: 926 YVSEPKVFIIPQNKLNK 942
           YV          +  ++
Sbjct: 886 YVRSLFADPFDPSVYHR 902


>gi|209523339|ref|ZP_03271894.1| UvrD/REP helicase [Arthrospira maxima CS-328]
 gi|209496081|gb|EDZ96381.1| UvrD/REP helicase [Arthrospira maxima CS-328]
          Length = 719

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 61/188 (32%), Gaps = 29/188 (15%)

Query: 94  PDLKEKLKKSQ-DEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDL 152
            + +E L++++              +  + +         +   Y    ++    +  D 
Sbjct: 381 EEWQEVLQQNRCQTLRDYLGSRRIGRGTRLSRQQRQGIWLVFEEYRNLLREAGYREANDA 440

Query: 153 IINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSS 212
           + +   +++ +        +       +++DE QD S   +E+IR++            +
Sbjct: 441 MYDAISIIRAKG-------REILPYKAVIVDEAQDMSKGAFELIRAIAG--------PPT 485

Query: 213 PRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILT 272
              +F VGD  Q IY              +       +   +    +L L++R+T +   
Sbjct: 486 ANDIFLVGDAHQRIYG-------------QTVILSHCHIDIRGRSKKLRLNYRTTDETRK 532

Query: 273 VVDKVFSI 280
               V   
Sbjct: 533 WATAVLEN 540


>gi|310643531|ref|YP_003948289.1| uvrd/rep helicase family protein [Paenibacillus polymyxa SC2]
 gi|309248481|gb|ADO58048.1| UvrD/Rep helicase family protein [Paenibacillus polymyxa SC2]
          Length = 713

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEP 234
           Q  +H++IDE QD S     ++                  +   +GD  Q I+ + G   
Sbjct: 478 QRFDHVVIDEAQDFSPFHIALLDLFV-----------KGHSFTILGDLSQGIHEYRG--V 524

Query: 235 KRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSI 280
                   +     T          L  S+RST +I+   + +   
Sbjct: 525 HAWEEMSSLFAPEQTGY------FALTRSYRSTLEIIEFANTILEQ 564


>gi|330960670|gb|EGH60930.1| hypothetical protein PMA4326_19193 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 452

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 45/149 (30%), Gaps = 24/149 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++                 T   VGD  Q +Y F GA
Sbjct: 187 LSQRFGAILLDEGQDVNPVIANLVQI-------------QKITQVTVGDRHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    +  +K             L  SFR    +  V + + S       L     
Sbjct: 234 VDALNSPAMKDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            T+  R+          L   V    ++ 
Sbjct: 283 PTLVKRALPEDLPHRTYLHRTVSGVIENA 311


>gi|325479832|gb|EGC82917.1| putative ATP-dependent nuclease subunit B [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 1122

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 89/656 (13%), Positives = 182/656 (27%), Gaps = 122/656 (18%)

Query: 338 QESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLK 397
           +  S        A  I+ MI  +           + +DI + +    D          + 
Sbjct: 298 ENPSTKTEVETCAQLINYMIKKE---------GYRYRDIGIYI---SDEDEYKNEIEKVF 345

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSED------ 451
           N Y + V  +    L+D+  IK  +A+ R  +           L+S LF+F+ED      
Sbjct: 346 NRYDLPVFMDSGRKLSDNHIIKTFLAILRLAIYNFSQDDLNYFLRSGLFSFAEDFDKKII 405

Query: 452 -----------------DIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                            D       +   E +YE   K       K       ++EL   
Sbjct: 406 VFQNFIRNRKIKGKMFLDDKYFILDKEFYENLYENDPKREEKLTEKILE-YGIVNELRER 464

Query: 495 AQFC-------------SPHDFFTLILGAKKGRQQFIS-----------RFGNEVIDVLD 530
                            +       +L  +  R                    E   V D
Sbjct: 465 IIKLISPILSLNDEITITIAKAIFDVLNDEDIRSGINKYQQILKSTSKLDDFKENDQVWD 524

Query: 531 EFLNFTLRN---EQNSYSSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESP 586
           +F+              S+L+++   +E     I       + + + + +   A+  +  
Sbjct: 525 KFVEILEDLVALMGERESNLRKIYGLIEATCRDINVGIIPPSKDHIIVTSFSRARISDRG 584

Query: 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEE 646
           + F +      F       M +  +  D         ++   +    + +   +  T  +
Sbjct: 585 INFALGLNDVFFPSGSSADMIVGKNEKDKLKDLNLDLKAMDEDLDEREKLNLYRLITISD 644

Query: 647 YNRLLYVGMTRASDQL--------IICKHSNTSNEK-------KSNQRTWYDMVYDSFHN 691
                Y    R S+ +        I+    +   +         ++     +        
Sbjct: 645 RIFFSYSLSNRKSEAINKSVVLNSIMNIFRDGKGKMYFESMIYGNDLNLSIEKYSFEKIG 704

Query: 692 DERVKKIKLTNSINKDEWIAYEWSTHHPENTPLERE-ETIKQLMDEQKIPKKLFSPIKND 750
              ++ I+      K +  AY+ S    +      + + I++ +      +KL   + + 
Sbjct: 705 KYALENIRKIKKNEKIDPDAYDISKAFIKYLKSNDDFDLIRKGLTYSNDKEKLSKELSSK 764

Query: 751 INEPYILNPSTIDTKGKTNLE-----------SLLSDNQTFNRGLIIHKLLQVIFTLPEH 799
           + +    N S I+   +   +               D      G I+HKLL+ I  + + 
Sbjct: 765 LYKKNHFNVSEIERYSRCPYQYFVNYGLRPNIEDSYDVDHLEVGNIVHKLLEDISKVLKD 824

Query: 800 KRKNFIT-SYCTKNAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYS----------- 847
                I      +          +  L    R+  +P     ++    S           
Sbjct: 825 TDIEIIDPKNLEEILIENFRLATEKNLDQTRRV--DPRNKFILNNILKSGKRNTDKLIDQ 882

Query: 848 ------EV-SVSGKINCP----------KKDIIISGRIDQISISQQNIFIFEYKTH 886
                 EV +V                   +  + GRID+I  S   + I +YKT 
Sbjct: 883 VKKGDFEVYAVEKDFGYKNRESLPEVYIDGENYLRGRIDRIDKSGDFVRIIDYKTG 938


>gi|289650694|ref|ZP_06482037.1| hypothetical protein Psyrpa2_23602 [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 485

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 46/149 (30%), Gaps = 24/149 (16%)

Query: 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGA 232
           + Q    IL+DE QD + +   +++  T              T   VGD  Q +Y F GA
Sbjct: 187 LSQRFGAILLDEGQDVNPVIANLVQIQT-------------ITQVTVGDRHQQLYRFRGA 233

Query: 233 EPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDST 292
                    +  +K             L  SFR    +  V + + S       L     
Sbjct: 234 VDALNSPAMKDAEKHF-----------LTQSFRFGPAVAYVANVILSFKGEKIPLQGLGQ 282

Query: 293 TTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
            T+  R+          L   V    ++ 
Sbjct: 283 PTLVKRALPDDLPHRTYLHRTVSGVIENA 311


>gi|257893635|ref|ZP_05673288.1| ATP-dependent DNA helicase [Enterococcus faecium 1,231,408]
 gi|257830014|gb|EEV56621.1| ATP-dependent DNA helicase [Enterococcus faecium 1,231,408]
          Length = 311

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 76/234 (32%), Gaps = 40/234 (17%)

Query: 138 EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
           +   ++   + F         LL +R     + +K      +I IDE+QD +  Q  +++
Sbjct: 47  QRELRQEDAVLF--------FLLMRRTYPVTVTHKA----RYIFIDEMQDFAPSQVALLQ 94

Query: 198 SLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257
           +L                L   GD  Q+++         V   + +   R      + + 
Sbjct: 95  ALF-----------PKANLTFCGDLNQNVFG----NETIVGSLEDLFVDR------EVTR 133

Query: 258 IELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQ 317
            +L  S+RST +I    +         +  +      +  + +         +    ++ 
Sbjct: 134 FQLTTSYRSTKEITDFANHFIVKEHQVETTARKGDLPLLIQGTTD------DIKLNWLAD 187

Query: 318 HDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVI 371
                  +   W +   +  QE   ++ A+ +   +   +      S+  KR I
Sbjct: 188 TIRTTQGKARYWRTAIIAKTQEECEALYAQ-LPDELKQQVQLILNESDFMKRSI 240


>gi|56963024|ref|YP_174751.1| ATP-dependent DNA helicase [Bacillus clausii KSM-K16]
 gi|56909263|dbj|BAD63790.1| ATP-dependent DNA helicase [Bacillus clausii KSM-K16]
          Length = 675

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/422 (13%), Positives = 113/422 (26%), Gaps = 108/422 (25%)

Query: 11  ESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQT-LQQASQTQCIEERFSLL 69
           ++ + +          Q  D+  Y       G+    K+ +  +      +  ++ F   
Sbjct: 275 DTKKRLANQFESKLEQQSEDVLAY------KGSLACQKQMRRFIDAYVGERVPKKDFCPW 328

Query: 70  SSFFLTQKFTP---QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLAS 126
               L ++      +++       K+      + K+  +     R      +    + A 
Sbjct: 329 DGCVLNKETMKQWIEQDFAASPPMKRRERFHARAKRWIE-IEAKRFEDKKEQQAFKSEAL 387

Query: 127 LTLAK--------YLNAHYEEAKKKNCV----------LDFEDLIINTNDLLKKRDVSAW 168
             L           L   Y    K+  +          L +ED+                
Sbjct: 388 KRLRSFLSYWSKPDLAKLYTAFLKEQQLPVPASLKEKRLGYEDIAPLVYM------HQQL 441

Query: 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYS 228
              + D   +H++IDE QD S     V++             +       +GD  Q I+ 
Sbjct: 442 YGIERDARFDHVVIDEAQDVSPFMLAVLK-----------ERTRAGGFTILGDLAQGIHG 490

Query: 229 FHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLS 288
             G         + +            S +++  S+RST +I+   +++      A    
Sbjct: 491 DEG--ISNWAAFEEVFAN-------NVSYVQMERSYRSTMEIIEFSNRILQQMAFA---- 537

Query: 289 EDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARR 348
                       R GQ   V+                                       
Sbjct: 538 ----PAPAKPVFRSGQDVVVEQRPT---------------------------------EH 560

Query: 349 IAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGND 408
           +A+ +  M    T            + I VL R  K +  I    +    D  + + G +
Sbjct: 561 VAHWVKAMQDKQT------------QTIAVLTRTEKASTAICRQLQAAGFDAHLLIAGGE 608

Query: 409 RF 410
           R+
Sbjct: 609 RY 610


>gi|319763162|ref|YP_004127099.1| exonuclease-like protein [Alicycliphilus denitrificans BC]
 gi|317117723|gb|ADV00212.1| exonuclease-like protein [Alicycliphilus denitrificans BC]
          Length = 855

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/549 (10%), Positives = 140/549 (25%), Gaps = 59/549 (10%)

Query: 398 NDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSEDDIFKIC 457
              ++ V        TD   ++ + AL +       D +   +  +         +    
Sbjct: 254 QAGRVPVALAG----TDRALVRRITALLQGAGLAARDENGWTLSTTRAAAQVMAALRACA 309

Query: 458 TQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517
                   + ++++          + + +++          +P         A    Q  
Sbjct: 310 WDAGSDAVL-DWLKAVPVIEEPALRALEQWLRRNAVRRWSGAPGRAQGRPAIAATIAQVE 368

Query: 518 ISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTV 577
             R        L E               L+ L   L+                V ++ +
Sbjct: 369 ALRAPMRAARPLAE--------------WLRGLRQLLQASGQWDALQQDDAGERV-LLEL 413

Query: 578 HTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIK 637
           H A+GLE  +      G ++           +               +      +  L+ 
Sbjct: 414 HLAEGLEDSLADAEGAGRRLSPGDFGHWADQVLEATRFKPDWEQDAAADLVVLPLPQLLA 473

Query: 638 HLKKSTQE---EYNRLLYVG-----MTRASDQLIICKHSNTSNEKKSNQRTWYDMVYDSF 689
               +      +  RL          T+A  Q +          + + +  W D +   +
Sbjct: 474 RPFAALVLAGCDEKRLQAAPEPPGPWTQAQRQAL--GLPTREALEAAQRAAWADALQTPW 531

Query: 690 HNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFSPIKN 749
            +            +     +A   + H            +      +  P     P+  
Sbjct: 532 VDVLWRASEGGEPLLASPLVLALPPALHAQAPQDTRLPRAVAPGATPRPWPVGARLPVAQ 591

Query: 750 DINEPY------ILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVI-------FTL 796
                Y            +   G    + L ++    + G  +H +LQ          T 
Sbjct: 592 LSASAYADLRHCPYRFYALRQLGLQEQDELEAELDKRDFGTWLHAVLQRFHEGLRDAPTR 651

Query: 797 PEHKRKNFITSYCTKNAKLWP---------AKEYKNLLLSITRLLENPMMTTAMSCDSYS 847
              +R   + +  ++  +            A  +  L     R L+        +  + +
Sbjct: 652 DAAERSARLDAAASQAREQLGLAGSDFLPYASGWPQLRDGYLRWLDEHEAAG--ARFARA 709

Query: 848 EVSVSGKINCPKKDIIISGRIDQISISQQ-----NIFIFEYKTHHHVPQEIEHIPYTHIA 902
           EV     +      + + G++D+I  ++         + +YKT             T   
Sbjct: 710 EVEAQRHLALKGGSLELVGKLDRIDEAKDAEGRAGTLVIDYKTEGSQTTRARVQAGTEDT 769

Query: 903 QLSIYEKIL 911
           QL+ Y  ++
Sbjct: 770 QLAFYAALM 778


>gi|88601851|ref|YP_502029.1| ATP-dependent nuclease subunit B-like protein [Methanospirillum
            hungatei JF-1]
 gi|88187313|gb|ABD40310.1| ATP-dependent nuclease subunit B-like protein [Methanospirillum
            hungatei JF-1]
          Length = 1140

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/573 (11%), Positives = 135/573 (23%), Gaps = 112/573 (19%)

Query: 483  HVIKYIHELIHIAQFCSPHDFFTLILGAKK-------GRQQFISRFGNEVIDVLDEFLNF 535
             ++  I  L            F  IL                 +   +E    L  F   
Sbjct: 485  RLVGIIKRLRDKRTIREHIWHFKTILKEIGSPVPGLAHANSLNAWLTDEEYLDLSSFHTL 544

Query: 536  TLRNEQNS------------YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGL 583
                +  S              +  + I  +           S + + V +  +      
Sbjct: 545  LSELQDLSGTGVISYLNPAVPVTFIDFIGAVRHVLQEKSGNVSPDASGVILTGIREIAHQ 604

Query: 584  ESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKS- 642
              P VFLV            +      S N            +         +       
Sbjct: 605  HYPYVFLVSLNEGHIPRLTTRLPFTNSSENSRMDTRTLSDILRQEKYQFITALAAGTTHL 664

Query: 643  -----TQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSNQRTWYDM-------VYDSFH 690
                   ++   +L            +       +++        DM       V     
Sbjct: 665  YLSWYEHKDERTVLSSVFIDYLKSSTLLPEWGRGSDEGGYSGFPGDMEASYSAGVCIHNS 724

Query: 691  NDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLER-------EETIKQLMDEQKIPKKL 743
              ER +     + +             +               ++ I+  +  Q  P   
Sbjct: 725  EWERSRSYIPEDVLLSSLVQRISIERTYRFRLNRSEYDGIIGDDQIIRSALHFQFSPAYS 784

Query: 744  FSPIKNDINEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLL------------- 790
            +S    +                   L  + SD     +G +IH ++             
Sbjct: 785  WSASMLETYAKCPFRFYLERVLHIRPLPDIGSDIPPETKGNLIHVIMSRFKRTMHENRLL 844

Query: 791  ---QVIFTLPEHKRKNFITS-----------YCTKNAKLWPAKEYKN------LLLSITR 830
               +  F       ++               +  K  ++   ++         ++  I R
Sbjct: 845  PIKEAGFDTALSLIRDIAEEECDKVPYTTPLWIAKKRQIMGGEDIGGGILERFIMTEIDR 904

Query: 831  LLENPMMT-------TAMS------------CDSYSE----VSVSGKI------------ 855
            L  +                            DS +E    +++  ++            
Sbjct: 905  LSPDEDGRVPHQFTPRFFEYSFGAVRGPDDDPDSRTEPVDLLAIQRELKKSQNPGQNDRD 964

Query: 856  -NCPKKDIIISGRIDQISISQQNIF-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
             +  +  I   G+ID+I ++   +F I +YKT  ++P   +    T   QL +Y    + 
Sbjct: 965  TSESENSIRFIGKIDRIDLTPDGLFGIIDYKTGKNIPGSSDLTRMT-ALQLPLYLLAYQH 1023

Query: 914  SYPNKSLVCLLIYVSEPKVFIIP--QNKLNKAF 944
               NK +    I +    +  IP     L +  
Sbjct: 1024 ISSNKPVFGSYIQLQRKILHSIPLYDPTLKQTL 1056


>gi|319789611|ref|YP_004151244.1| hypothetical protein Theam_0632 [Thermovibrio ammonificans HB-1]
 gi|317114113|gb|ADU96603.1| hypothetical protein Theam_0632 [Thermovibrio ammonificans HB-1]
          Length = 823

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/443 (10%), Positives = 110/443 (24%), Gaps = 62/443 (13%)

Query: 486 KYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLD-EFLNFTLRNEQNSY 544
           +++HE+    +     ++   +                   D L+ + L      E  S 
Sbjct: 321 EFLHEIRESEESLPLTEWLRRLWSRSF-----------RKSDNLEKQLLKLLREIEGLSE 369

Query: 545 SSL---------QELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGS 595
             L         Q     L+            +   V + +  +A  L    V  +D   
Sbjct: 370 RGLFLDRRLNGPQARKELLKLLQNRFYMTDDNDPFGVHVCSPESAVSLFPEAVIFIDLSE 429

Query: 596 QVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLK----KSTQEEYNRLL 651
             +            +  +     +      ++       +         +      +L 
Sbjct: 430 GSYPRAFPYDPDFSYAEREQINRLLKACGLSNQPFPSRKNLIAYDFLTFHNILSLPLKLF 489

Query: 652 YVGMTRAS-DQLIICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWI 710
           +  + R   + L        +  K++ +    + V          +              
Sbjct: 490 FATVNRRRGESLFTYLLREFAGAKEAPEFATREAVNAFRVYKGEREPETEPERGIVG--- 546

Query: 711 AYEWSTHHPENTPLEREETIKQLMDEQKIPKKLFS--PIKNDINEPYILNPSTIDTKGKT 768
              W    PE   L +     +   ++    +L S      +      L P T D+    
Sbjct: 547 ---WKDQGPERAFLVKGSKALRKRLKEITVSQLLSYLRCPTEAFIELFLTPDTQDSIFSA 603

Query: 769 NLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYK-NLLLS 827
                         G + H+L+           +        +      A E K  +L  
Sbjct: 604 E-------------GTLYHRLIA-----AGDSWEEEFDREFERLFSRLKAGEKKLEILKE 645

Query: 828 ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHH 887
             +       +  +      E     ++    +  +I GR D I  ++  + I ++K   
Sbjct: 646 ALK----KNFSRFIKKAGPIEGKHEEELAVTVEGTVIRGRADLIVEAE-KLKIVDFKRGS 700

Query: 888 HVPQEIEHIPYTHIAQLSIYEKI 910
                   +  +   QL +Y   
Sbjct: 701 VKV----RVTDSEAIQLLLYAAA 719


>gi|297559446|ref|YP_003678420.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296843894|gb|ADH65914.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 603

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 83/299 (27%), Gaps = 43/299 (14%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L + L+   D     R     +   +               Y  A +   +  +  L   
Sbjct: 282 LAKGLELLPDYIRCERSGRVQHLAPEHRRQVWETV----RRYVGAMRVEGMWSYPQLAAE 337

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              +L +R+              H ++DE QD    QW ++R+              P  
Sbjct: 338 AARILGRREPL----------FRHAVVDEAQDLHPAQWRMLRA---------AVPEGPDD 378

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           LF VGD  Q +     +     +  +                  L +S+R T +IL    
Sbjct: 379 LFIVGDPHQRVSDNRVSLASLGINVR-------------GRGQRLRVSYRVTQEILDWSM 425

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +      A G+ +++ T   +RS   G    V        +  ++       W   +  
Sbjct: 426 PILDR-RAALGMDDNADTLAGYRSLLRGPAPVV-----RGCEDRAEELTALGDWVRVWLE 479

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTR 394
                +   +A R    I   I  +          ++       VR      L     R
Sbjct: 480 AGVNPAEIAVAGR-NQWIVRGIAKELEARGVPTAQLEDSGAAEAVRVGTMHRLKGQEFR 537


>gi|291445078|ref|ZP_06584468.1| helicase protein [Streptomyces roseosporus NRRL 15998]
 gi|291348025|gb|EFE74929.1| helicase protein [Streptomyces roseosporus NRRL 15998]
          Length = 780

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 100/343 (29%), Gaps = 46/343 (13%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
              P  +   ++   + S   G  T  +    L+ +       E        FL      
Sbjct: 396 LLRPRARKLLLDALWNKSSGRGRYTDPELIAELRSSFDEDVSTETP------FLEFLDAW 449

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL------------ASLT 128
              +  + +     D + +L +     +   +     +  K               A L 
Sbjct: 450 WPELTPRRVLAAMADER-RLGRWSRRILNQGETRRLARSLKRLDVEGNGPLSVHDVALLD 508

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDE 184
             + L       K+K    D  D +   ++L+ +R+ + W R +       E  H+++DE
Sbjct: 509 ELQALLGTPNRPKRKREA-DPLDQLTGLDELMPQREETQWERAERLAAERTEYAHVIVDE 567

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD + +QW ++                  T   VGD  QS      ++P          
Sbjct: 568 AQDLTPMQWRMV-----------GRRGRHATWTIVGDPAQS----SWSDPDEAAA----- 607

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +      +      L +++R+ A+I  +  KV ++            +T         +
Sbjct: 608 ARDEALGSRPRRRFTLTVNYRNPAEIAELAAKVLALAMPGMESPAAVRSTGVVPRFEPVR 667

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
            G   L   V  +          +         +  +   LA 
Sbjct: 668 DG--DLAATVREEAARLLEQVDGTVGVVVAMNRRAQAREWLAE 708


>gi|332039918|gb|EGI76311.1| exonuclease-like protein [Hylemonella gracilis ATCC 19624]
          Length = 915

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/580 (11%), Positives = 146/580 (25%), Gaps = 83/580 (14%)

Query: 387 PLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446
             +T   R +   + + +     + L+   A   LM   R         + +  LK    
Sbjct: 278 RALTRRVRAMLARHGVQMRDETGWKLSTTRAGAQLMTALRACARDAGSDAVLDWLKHAPA 337

Query: 447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISK------FQHVIKYIHELIHIAQFCSP 500
                        R +   ++ +                  Q +++              
Sbjct: 338 CDETALRALEAALRRQPRRLWRHAAAGLAEASPAQLEGNVLQALLRDTEGWRAALTGGRS 397

Query: 501 HDFFTLILGAKKGRQQF--------ISRFGNEVIDVLDEFLNFTLRNEQNSYS------- 545
                  L A                   G EV   L   L+ T +              
Sbjct: 398 TRTLQEWLEALHALLSLCGIWDTLIQDEAGLEVSRALHYALDETGQATPQLPPQALWARR 457

Query: 546 --SLQELISELE-QYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH 602
             SL E    ++      I +       +  ++ +    G +   + L     +      
Sbjct: 458 RWSLSEFTGWVDRALESAIFKPAYPLREQAVLLPLAQMLGRDFGAIVLPGCDERSLP--- 514

Query: 603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQL 662
                       +P  P    Q  +      ++++  +++  +E        ++RA    
Sbjct: 515 ---------AAPEPTGPWTAAQRAALGLPTREVLRAAQQAAWDE-------AVSRACPID 558

Query: 663 IICKHSNTSNEKKSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENT 722
           I+    + S+ +          +      ++R +   ++     D   A           
Sbjct: 559 IL-WRGHDSDGEPLLASPLVLQLQWQARGEQRAQAGWVSAREADDVTAAQAMVLVGSAPD 617

Query: 723 PLEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN------------- 769
           P ER   +   + +        +P  N+   P  L+ S                      
Sbjct: 618 PRERRAVVPAPIAKPAPR---LAPPWNETLRPTRLSASAYQDLRHCPYRFHALRLLGLRE 674

Query: 770 LESLLSDNQTFNRGLIIHKLLQVIF---------TLPEHKRKNFITSYCTKNAKLWPAKE 820
            E +  +    + GL +H +LQ                  R +       +  +L   + 
Sbjct: 675 AEEMEGELDKRDFGLWLHAVLQTFHVQDTPNGASREDRAARLDAAAQAVAREQRLADDEF 734

Query: 821 YKNLLLS-------ITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISI 873
                         +  L+ +       +     E      ++     + + GR+D++  
Sbjct: 735 LPYQAAWPRVREGYLDWLVTHEAEGWRFA---LGEHPAEQALDI----VTLFGRLDRVDR 787

Query: 874 SQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD 913
           +   + + +YKT                 QL+ Y  +L  
Sbjct: 788 ASGALMVMDYKTEAEQTTRNRVKEALEDTQLAFYAALLSA 827


>gi|300814040|ref|ZP_07094328.1| hypothetical protein HMPREF9131_0081 [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511849|gb|EFK39061.1| hypothetical protein HMPREF9131_0081 [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 521

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 22/158 (13%)

Query: 783 GLIIHKLLQVIFTLPEHKRKNFITSY--------------CTKNAKLWPAKEYKNLLLSI 828
           G I HK+L+  F   +   ++++ +                + + K    K++  LL  +
Sbjct: 306 GSIYHKILENYFKNRKVYDEDYLKNLIMKETFPKCSKVEDLSFSEKFKFIKDFSYLLDIV 365

Query: 829 TRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHH 888
               +   +                + +     I + G ID+I        + +YK+ + 
Sbjct: 366 RADTDANRINKDFMPKL-----FEKRFSFDIGPINLVGSIDRIDAKDDEEILIDYKSSNA 420

Query: 889 VPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIY 926
             +    +      Q  IY   L     +K +     Y
Sbjct: 421 STRTAADVFNNKSFQSVIY--ALARKNKDKKI-AGFYY 455


>gi|313576853|gb|ADR67027.1| pathogenesis-related protein [Klebsiella pneumoniae subsp.
           pneumoniae]
          Length = 649

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 104/342 (30%), Gaps = 26/342 (7%)

Query: 145 CVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
             L    ++  T  LL+ +     I   +      ILIDE QDT       ++ + +   
Sbjct: 181 GALPHNYVLDATAWLLQNKPTLQSI---LKDRHPIILIDESQDT-------MKGVLDSLM 230

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
           V         TL  +GD +Q IY    A+               +   + ++  EL ++ 
Sbjct: 231 VLAKKSERDLTLGLLGDHRQRIYMDGHAD-------------LPSIVPESWATPELQMNH 277

Query: 265 RSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNP 324
           RS   I+T+++K++   E         T             GTV+L+    S+      P
Sbjct: 278 RSQRRIVTLINKIW---ETEFEGRTQPTKGSAQHPRTEKAGGTVRLFLGDTSRSPEDKVP 334

Query: 325 QQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRK 384
            +         +   +  +    ++      ++ T   F +  + ++             
Sbjct: 335 SERWCAERMFEISGLADWNQGQYQLLALEHKLVATRGSFLDVYEAMVLLDPNAAAPSGSG 394

Query: 385 DTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444
           D    + +   L     +    +D  I+ +  A +     G      ED  +        
Sbjct: 395 DNKGPSTVQILLNELAHLEACVSDEGIVNEFKATEVFRRYGGLDNMPEDSEARAERTDEM 454

Query: 445 LFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIK 486
           L   +   +    T+    E +   +         + Q    
Sbjct: 455 LEAIAIFAMACANTESTIAEVLAPVLNAKLFEVDHRLQEAYA 496


>gi|331084048|ref|ZP_08333155.1| hypothetical protein HMPREF0992_02079 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402410|gb|EGG81980.1| hypothetical protein HMPREF0992_02079 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 682

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 44/203 (21%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           +  +   + E      +             M       +   K L   Y    K+     
Sbjct: 370 LLSRMEAVLEYFIDEYETLKDCTLPEEERDMLYGKFMKMYETKDLYVLYSRFLKRTG--- 426

Query: 149 FEDLIINTN-------DLLKKRDVSAWIRYKI-------DQEINHILIDEVQDTSLIQWE 194
                +           LL   DV   + +K         + I H++IDE+QD S +Q+ 
Sbjct: 427 -----LKALPHCSYEKRLLPYEDVYPMLYFKYRLFSVTQQKTIKHLVIDEMQDYSYLQYI 481

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                +  +GD+ Q++     AE + VL             G++
Sbjct: 482 ILKELF------------HCPMTILGDKAQTM----EAEVQDVLEF------LPEIYGKQ 519

Query: 255 FSIIELPLSFRSTADILTVVDKV 277
             +I +  S+R+T +I +  +++
Sbjct: 520 IRVIYMNKSYRNTVEIASYANEI 542


>gi|241763004|ref|ZP_04761066.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
 gi|241367956|gb|EER62175.1| UvrD/REP helicase [Acidovorax delafieldii 2AN]
          Length = 687

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 23/133 (17%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
            +     ++++ +    LL ++     I   +      +L+DE+QDTS  Q   +R L  
Sbjct: 204 AEQGYFCYDEIFLLGEALLAQQPSLPSI---LQNRFPFVLVDEMQDTSEQQNAFLRRLF- 259

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
                         +  VGD  Q+I  F G                          + + 
Sbjct: 260 ------PRDVPAVCIQRVGDPNQAI--FEGGVKPVADAFPDNI-----------RCVNIA 300

Query: 262 LSFRSTADILTVV 274
            SFR  A I  + 
Sbjct: 301 DSFRFDASIGALA 313


>gi|190895193|ref|YP_001985486.1| hypothetical protein RHECIAT_PC0000866 [Rhizobium etli CIAT 652]
 gi|190700854|gb|ACE94936.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 868

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/562 (10%), Positives = 135/562 (24%), Gaps = 74/562 (13%)

Query: 436 SFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIA 495
           S   +    L   S++ +  +  +                   +       + H L    
Sbjct: 274 SCAALADVLLRGLSQERVRLLFARVSPARQNIPLDWAKGLRRSAALSTGQHWRHALRQAR 333

Query: 496 QFCSPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNF-TLRNEQNSYSSLQELISEL 554
              +  D     L       + ++R   E        L+   L   Q++         EL
Sbjct: 334 AERADGDAAENALLPVI---ELLARGLLEADRAGRLLLHGPALTLWQDALRMAPPQAVEL 390

Query: 555 EQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLND 614
                 +        + V     H A G     V L+   +  +  + I+   +   L  
Sbjct: 391 SLQALRVDDGKEPGSSVVWGPARHLA-GASRKHVRLLGLEANAWPRQAIEDPLLPQHLLG 449

Query: 615 DPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEK 674
              +P                         +E  R+  + ++++    +   H + +   
Sbjct: 450 KIRLP--------------------SADIADEDRRMHNLIVSQSDGYALSRGHRSATGAL 489

Query: 675 KSNQRTWYDMVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTPLEREETIKQLM 734
           ++    W              +     +                  +    R     +  
Sbjct: 490 QAASTLWRRDQERIVSRSGIPRHAFSESDRLYARPPDAGKQRQVRSSRACWRAWQDSERH 549

Query: 735 DEQKIPKKLFSPIKNDINEPYILNPS-------TIDTKGKTNLESLLSDNQT-------F 780
                  +   P+  D         S        +    +  L     +           
Sbjct: 550 TMHDGLVRANHPLILDALAEVQSTTSINRLLCNPLGFVWEYALHWREPNLDPQPLALDHR 609

Query: 781 NRGLIIHKLLQ-VIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLL-------------- 825
             G ++H L+  V+                 +  +L  A      +              
Sbjct: 610 AFGELVHALIGGVLRNGAPRNTDEIEIGLADEARRLGDAWPIARAVPPGLLWRHTMTVAR 669

Query: 826 LSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKK------------DIIISGRIDQISI 873
              +R L + +        S++E++    I  P               +   GRID++  
Sbjct: 670 ERASRGLRDALGEP--RGTSWTELTFGEPIAEPHPWTTLSPVSVGATGVAFRGRIDRLDE 727

Query: 874 SQ--QNIFIFEYKTHHHVPQEIEHIPYTH-IAQLSIYEKILKDSYPN-KSLVCLLIYVSE 929
                   I +YK      ++   +       Q   Y    +   P  +++   L Y+  
Sbjct: 728 DGSRGTAIITDYKAGAAPERKKTIVFNRGTELQRVFYALAARSLLPEVRNVESRLTYLRH 787

Query: 930 --PKVFIIPQNKLNKAFAEIST 949
              +   +  ++L  A  E  T
Sbjct: 788 EPARTLSLVHDELVAAIEEAIT 809


>gi|308455540|ref|XP_003090297.1| hypothetical protein CRE_04415 [Caenorhabditis remanei]
 gi|308264727|gb|EFP08680.1| hypothetical protein CRE_04415 [Caenorhabditis remanei]
          Length = 1230

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 75/564 (13%), Positives = 160/564 (28%), Gaps = 90/564 (15%)

Query: 136  HYEEAKK-KNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWE 194
             Y+E    +   +  ++L+     L  +      I   +  + + +LIDE QDT      
Sbjct: 734  AYKEWLSIEAGEISHDELLKVAKHLFSEHPTLTKI---LSDQYDVLLIDEYQDTP----- 785

Query: 195  VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
             +  L+               +   GD +Q+I+            + +   K A  +G+ 
Sbjct: 786  -VDVLSILLETLPEPKDRSLRIGFFGDGEQAIHEG---------DKGQAIVKSAIASGR- 834

Query: 255  FSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQV 314
              +I    + R+ A +L+V++++       +             +    + GT +     
Sbjct: 835  LQLITKDQNRRNPATVLSVINRL-------RADGLVQVQATDMNAPNFNKEGTARFVYTE 887

Query: 315  VSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAK 374
             ++ ++    + E  + +  S        +    IA           I+   +      K
Sbjct: 888  QNELNTDELRKLEFCSDWGFSSEDTKLLYLGKSMIARE-KQFPRLMAIYDKDRVVEYSKK 946

Query: 375  DILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDD 434
                LV KR  +P              I + G+            D       + S    
Sbjct: 947  LKEALV-KRGISPNDDATFSE-----VIELHGSIAPPTKGQQEAFDNEPDLLVLASPFLF 1000

Query: 435  LSFVCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHI 494
                    +         + ++   R   E     I              I+ +  L   
Sbjct: 1001 TDIATTSSNSDRLLGTKKVSELD-DRDRGEKRDPLINHLI---------AIQELRALFRQ 1050

Query: 495  AQFCSPHDFFTLILGAKKGRQQFISRF-------GNEVIDVLDE-----FL---NFTLRN 539
             +F +        + + +GR++  +          + + DV+        L   +  LR 
Sbjct: 1051 GRFSAVIRAMDETITSIEGRERVATDLKTLDSMSDSPIGDVIAFAESSGLLKRKDAVLRF 1110

Query: 540  EQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFS 599
            +              E     I   +    +     T H  KG E   +F+    +  ++
Sbjct: 1111 QGKHP---YRYARVSEVPFQEIVNLYEYVEDHSPYSTQHGVKGSEWDNIFV-SLDNGGWN 1166

Query: 600  HKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRAS 659
            + + +++   P  N                                    +LYV  +RA 
Sbjct: 1167 NYNFERLLSDPQGNSSVHNR---------------------------SRMMLYVTCSRAK 1199

Query: 660  DQLIICKHSNTSNEKKSNQRTWYD 683
            + LI+  H  T       +  + D
Sbjct: 1200 ENLIVYIHKPTEATLARAREWFGD 1223


>gi|294619686|ref|ZP_06699102.1| phage protein [Enterococcus faecium E1679]
 gi|291594069|gb|EFF25527.1| phage protein [Enterococcus faecium E1679]
          Length = 271

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 68/209 (32%), Gaps = 29/209 (13%)

Query: 760 STIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAK 819
                       S  SD +    G  +H   +    + E  ++   +   +        K
Sbjct: 38  EAAALAKLKGDWSPTSDPKALLVGNYVHSYFES-KEVHEAFKEENKSRMFSSRKPYGLLK 96

Query: 820 EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIF 879
           +++     I RL +  +       +          +          G+ID +++  +  +
Sbjct: 97  DFQIAEQMIERLKQEEVFMNIYQGEK------EMIVTGELFGTTWKGKIDCLNVEDE--Y 148

Query: 880 IFEYKT--HHHVPQEIEHIPYT--------HIAQLSIYEKILKDSYPNK--SLVCLLIYV 927
             + KT    H  +  E+            ++ Q++IY+K+L   Y      ++     V
Sbjct: 149 FVDIKTTKDMHERKWNENYGSRETFIVNFGYVLQMAIYQKLLFQQYGKSFMPIIAA---V 205

Query: 928 -----SEPKVFIIPQNKLNKAFAEISTKI 951
                SE ++  I Q+ ++     +  KI
Sbjct: 206 SKQTPSEARLITIDQDNMDYELVMLKEKI 234


>gi|254718138|ref|ZP_05179949.1| UvrD/REP helicase [Brucella sp. 83/13]
 gi|265983091|ref|ZP_06095826.1| double-strand break repair helicase AddA [Brucella sp. 83/13]
 gi|264661683|gb|EEZ31944.1| double-strand break repair helicase AddA [Brucella sp. 83/13]
          Length = 325

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQ 60
           L   FG   +   + +  DLWP+P F    +   + LS+  G       A  L++  +  
Sbjct: 226 LHRAFGFEPDAREDDLLADLWPVPEFSDDAL--DLILSIPKGASRAQDFALQLKRLEKAS 283

Query: 61  CIEERFSLLSSFFLTQKFTPQKN--IITQEINKKSPDLKEKL 100
            + ++ ++L + FL     P+    + +  + K  P+ +E+ 
Sbjct: 284 GLPDKIAVLRAAFLKSTGEPKSGSYVCSAAVKKLLPEFEEEF 325


>gi|260587662|ref|ZP_05853575.1| putative DNA helicase [Blautia hansenii DSM 20583]
 gi|260541927|gb|EEX22496.1| putative DNA helicase [Blautia hansenii DSM 20583]
          Length = 695

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 44/203 (21%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           +  +   + E      +             M       +   K L   Y    K+     
Sbjct: 383 LLSRMEAVLEYFIDEYETLKDCTLPEEERDMLYGKFMKMYETKDLYVLYSRFLKRTG--- 439

Query: 149 FEDLIINTN-------DLLKKRDVSAWIRYKI-------DQEINHILIDEVQDTSLIQWE 194
                +           LL   DV   + +K         + I H++IDE+QD S +Q+ 
Sbjct: 440 -----LKALPHCSYEKRLLPYEDVYPMLYFKYRLFSVTQQKTIKHLVIDEMQDYSYLQYI 494

Query: 195 VIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQK 254
           +++ L                +  +GD+ Q++     AE + VL             G++
Sbjct: 495 ILKELF------------HCPMTILGDKAQTM----EAEVQDVLEF------LPEIYGKQ 532

Query: 255 FSIIELPLSFRSTADILTVVDKV 277
             +I +  S+R+T +I +  +++
Sbjct: 533 IRVIYMNKSYRNTVEIASYANEI 555


>gi|297671754|ref|XP_002813997.1| PREDICTED: LOW QUALITY PROTEIN: lupus brain antigen 1 homolog [Pongo
            abelii]
          Length = 2799

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 25/280 (8%)

Query: 22   PLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQ 81
                  +    +    +   G+ +   KA  ++       +   F +  +    +    +
Sbjct: 1122 AQEESTIPSWQEDEEEAEVDGDYSEEDKAVEMRTGDSDPRVYVTFEVFKNEIWPKMTKGR 1181

Query: 82   KNIIT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHY 137
                     +EI        E L        +   +    K   +     +    L   Y
Sbjct: 1182 TAYNPALIWKEIKSFLKGSFEALSCPHGRLTEEVYKKLGRKRCPNFKEDRSEIYSLFCLY 1241

Query: 138  EEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIR 197
            ++ + +    D ED++ N +  L K  V  W        I+ +  DE+QD +  +  ++ 
Sbjct: 1242 QQIRSQKGYFDEEDVLYNISRRLSKLRVLPW-------SIHELYGDEIQDFTQAELALLM 1294

Query: 198  SLTEDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRATNAGQ 253
                         + P  +F  GD  QSI    +F  ++ +       R    +     +
Sbjct: 1295 KCI----------NDPNAMFLTGDTAQSIMKGVAFRFSDLRSLFHYASRNTVDKQCAVRK 1344

Query: 254  KFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
               I +L  ++RS + IL +   V  + +     S D   
Sbjct: 1345 PKKIHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLP 1384


>gi|21754585|dbj|BAC04535.1| unnamed protein product [Homo sapiens]
          Length = 1043

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 68/250 (27%), Gaps = 33/250 (13%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
            + I +DE QD +     ++              S P     VGD  Q IY+F GA    
Sbjct: 641 FDAIFVDEAQDCTPAIMNIV-------------LSQPCGKIFVGDPHQQIYTFRGAVNAL 687

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
                               +  L  SFR   +I  V   +  + +  +  +        
Sbjct: 688 F-------------TVPHTHVFYLTQSFRFGVEIAYVGATILDVCKRVRKKTLVGGNHQS 734

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTI--- 353
               R    G V L  +  +    +     E        L     +  L R I   I   
Sbjct: 735 --GIRGDAKGQVALLSRTNANVFDEAVRVTEGEFPSRIHLIGGIKSFGLDRIIDIWILLQ 792

Query: 354 --SNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFI 411
                   + +  +   R    K+     ++         L   +    K S+   +   
Sbjct: 793 PEEERRKQNLVIKDKFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVVEKYSIRIPELVQ 852

Query: 412 LTDHLAIKDL 421
             +   I+DL
Sbjct: 853 RIEKCHIEDL 862


>gi|330719416|ref|ZP_08314016.1| superfamily I DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
          Length = 790

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 61/211 (28%), Gaps = 21/211 (9%)

Query: 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKR 236
           I  + IDE+QD + +Q   ++                     +GD  Q+I++        
Sbjct: 556 IRFLFIDEIQDYTPLQLAFLK-----------FSFPKAKFTVLGDLNQAIFT-----KDN 599

Query: 237 VLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIR 296
               +           +K  +++L  ++RST  I      +    +     + +      
Sbjct: 600 AKNLQNNFANLFD--SEKVEMVQLTQTYRSTQQITDFTKAILVDGKQIDAFNREGELPSV 657

Query: 297 HRSSRIGQVGTVQLWEQVVSQHDSQCNPQQE--SWTSYFDSLPQESSASILARRIAYTIS 354
           H          V+L EQ+    + Q        +             A +    I     
Sbjct: 658 HV-LTSEAEMLVKLQEQLRENDEQQDTTAIITKTLADAKALYAALKDAEVPVTLIQSENQ 716

Query: 355 NMIGTDTIFSNGKKRVIQAKDILVLVRKRKD 385
            +     I  +   + ++   +++    R  
Sbjct: 717 RLAEGTIIVPSYLAKGLEFDAVVIWEANRSQ 747


>gi|158339268|ref|YP_001520445.1| hypothetical protein AM1_6194 [Acaryochloris marina MBIC11017]
 gi|158309509|gb|ABW31126.1| hypothetical protein AM1_6194 [Acaryochloris marina MBIC11017]
          Length = 262

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 64/193 (33%), Gaps = 25/193 (12%)

Query: 759 PSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFT-----LPEHKRKNFITSYCTKNA 813
           P +   + +  L S          G  +H  L  ++       P      F   +    +
Sbjct: 17  PKSYQFRYEHKLPSPTIFGS-TKLGNALHAALANVYKDWNYAYPLPSLDWFAVCWQQHTS 75

Query: 814 KLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVS----GKINCPKKDIIISGRID 869
           +L P + ++  +    +L     +++         + +       +     +  +SGR D
Sbjct: 76  ELTPTQVHEGWV--ALQLYYERYISSL--PQIRKPLGIETKVRANLQVRNIEFTLSGRYD 131

Query: 870 QISISQQNIFIFEYKTHH--HVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYV 927
           ++      + + +YKT    + P  ++        QL  Y  IL+  Y        LIY+
Sbjct: 132 RLDYIDDGLELIDYKTSKSVNPPPSVD-------IQLGFYYLILEQIYKKALKRLSLIYL 184

Query: 928 SEPK--VFIIPQN 938
              +   + +  +
Sbjct: 185 RSNEKLTYEVTPD 197


>gi|331694931|ref|YP_004331170.1| RecB family exonuclease [Pseudonocardia dioxanivorans CB1190]
 gi|326949620|gb|AEA23317.1| RecB family exonuclease [Pseudonocardia dioxanivorans CB1190]
          Length = 296

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 19/165 (11%)

Query: 750 DINEPYILNPSTIDTKGKTNLESL---LSDNQTFN--------RGLIIHKLLQVIFTLPE 798
           D+     + P+ + T            L                G ++H  L+ +F LP 
Sbjct: 15  DVRPLPRVTPARLATWETCPRRFRMGYLDRPPPARGGAWAHHTLGAVVHLALRALFALPA 74

Query: 799 HKRKNFITSYCTKN----AKLWPAKEYKNLLLSITRLLE----NPMMTTAMSCDSYSEVS 850
             R     +              A +      +    L     +  +    S  +  E  
Sbjct: 75  RARTPAAAADLLDRNWSSEGFRDAAQAGRYRRAARGWLASYVVDHELGDTASDPAGVERW 134

Query: 851 VSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQEIEH 895
           VS  +      +++ GR+D+I        + +YKT  HVP + + 
Sbjct: 135 VSETVGGGASRLVVEGRVDRIDTRAGEAVVVDYKTGRHVPTDDDA 179


>gi|240169375|ref|ZP_04748034.1| UvrD/REP helicase [Mycobacterium kansasii ATCC 12478]
          Length = 703

 Score = 57.6 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 86/304 (28%), Gaps = 74/304 (24%)

Query: 96  LKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLDFEDLIIN 155
           L  ++  +       R         +               +E+A  +      E +   
Sbjct: 373 LARRIGTAAAYLSAKRTGRGRALGSRQRAQVWQA----MWEFEQALTQLGAWTHETIRRE 428

Query: 156 TNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRT 215
              LL+                 HI+IDE QD S  QW ++R+   +          P  
Sbjct: 429 ATALLEADTTKP---------YRHIVIDEAQDLSPDQWRLLRAAVAEA---------PDD 470

Query: 216 LFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVD 275
           +F  GD  Q IY+                  R            L L++R+TA+IL    
Sbjct: 471 IFIAGDTHQRIYN-------------NRVSLRDVGINIAGRSTRLNLNYRTTAEILGWSL 517

Query: 276 KVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDS 335
            +    E    +     +    RS   G    +Q ++++ ++                  
Sbjct: 518 GLL-RGERIDDMEGGLDSIAGCRSYVHGAPPRLQGFDKLDAET----------------- 559

Query: 336 LPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRF 395
                      R IA T++  I +           +   +I + VR +     +    + 
Sbjct: 560 -----------RFIASTVNEWINSG----------VAPSEIGIAVRAKWFGSKVADALKA 598

Query: 396 LKND 399
           +   
Sbjct: 599 MGIK 602



 Score = 41.8 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 26/108 (24%)

Query: 565 HSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQ 624
            S   + V + T+H  KGLE   V +   G++     +                      
Sbjct: 609 ASTKDDAVHVGTMHRMKGLEFRCVGVAGVGAKFVPAANAVTPIDED-------------- 654

Query: 625 SKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSN 672
                       +   +   E    LL+V  TRA ++L++  H   S 
Sbjct: 655 ------------RQTHEQDLERERCLLFVACTRAREELLVTWHGQPSP 690


>gi|83720983|ref|YP_443233.1| pathogenesis-like protein [Burkholderia thailandensis E264]
 gi|257139467|ref|ZP_05587729.1| pathogenesis-related protein [Burkholderia thailandensis E264]
 gi|83654808|gb|ABC38871.1| pathogenesis-related protein [Burkholderia thailandensis E264]
          Length = 639

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 75/553 (13%), Positives = 146/553 (26%), Gaps = 89/553 (16%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    L+  ++I  T   L  +     +R  +      +LIDE QDT+       ++L +
Sbjct: 169 RTRDSLNHSEVIAMTAAFLTSKPG---LRRMLVSRCPVLLIDESQDTN-------KALMD 218

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
            F   +       +L   GD  Q IYS            K    K               
Sbjct: 219 AFLHLEEEFHGRFSLGLFGDLMQRIYSDG----------KERLDKAIPARWAMPRK---R 265

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
           ++ R  + ++ V++ +                          + G V+++    +  D  
Sbjct: 266 MNHRCPSRVVEVINSI-----------RRDVDGEEQVPRSDAEKGVVRVFIAPQAGADPF 314

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
                           + +    +A          I  D  + N       A + L+  R
Sbjct: 315 AI--------------EAAVRQRMAT---------IAGDPAWQNSDTVKTLALEHLMSAR 351

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDH---LAIKDLMALGRFILSQEDDLSFV 438
           +         L         +                  +  L A  RF  +     S  
Sbjct: 352 RFGFAEFFEPLWAIDNLRTSLLQGAGAGLGFFIRDVLPLVNALRANDRFAATAIVKASSP 411

Query: 439 CMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFC 498
            + ++ L     + + ++   +   + +   I +            +     L  I    
Sbjct: 412 LLDRAALQEAGSNQVAQLGKAKAACDGLLALITEQPEINAQAVLEFVAQ-TGLFSIPDTL 470

Query: 499 SPHDFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSY-SSLQELISELEQY 557
           +P              +   +       D     +  T   E       L      LE  
Sbjct: 471 APF--------VSGDAKAVAAEDNAGQGDQ----MERTEDGEAEDTSPELSAWSKALEAP 518

Query: 558 PPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPG 617
              I+R       + +  T    KGLE P V +V       +    +             
Sbjct: 519 LSQIERYDLYARGQSQFATHQGVKGLEFPRVLVV------INDDEARGFLFAYDKFFG-- 570

Query: 618 IPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNEKKSN 677
                  +K ++    +     +++  +   RL YV  +RA   L I  +S      +S 
Sbjct: 571 -------TKEKSKADLENEAAGRETGSDRTRRLFYVTCSRAEKSLAIVYYSPDPALARSA 623

Query: 678 QRTWYDMVYDSFH 690
              +   V D   
Sbjct: 624 ILQYGWFVQDEVE 636


>gi|167647767|ref|YP_001685430.1| DNA helicase II [Caulobacter sp. K31]
 gi|167350197|gb|ABZ72932.1| DNA helicase II [Caulobacter sp. K31]
          Length = 588

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 23/120 (19%)

Query: 157 NDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTL 216
             L+ +       R  +      +LIDE QDT     + +++   D       H     +
Sbjct: 156 LALMIQAMALPKFRAVLTARYPVLLIDEYQDTDAAFVDALKAWFLD-------HGEGPLI 208

Query: 217 FAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDK 276
              GD  Q IY       +                    ++I+   +FRS   I+ ++++
Sbjct: 209 GLFGDHWQKIYGDGCGSVE----------------HAALAVIDKNANFRSADPIVQMLNR 252


>gi|283835663|ref|ZP_06355404.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220]
 gi|291068878|gb|EFE06987.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220]
          Length = 705

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 92/690 (13%), Positives = 184/690 (26%), Gaps = 115/690 (16%)

Query: 1   LKNRFGLSLNESYELIYKDLWPLPYFQVSDINKYVSLSMET---GNPTILKKAQTLQQAS 57
           +K R G S       I++ LW +       +       +      N   L  ++   +  
Sbjct: 73  IKKRLGNSEVVHVSTIHEMLWDIIKRAQPQLLICHKEKIINVIDDNKKELNHSEK-AKFF 131

Query: 58  QTQCIEERFSLLSSFFLTQK-FTPQKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNT 116
                 ++   +   F T+  F   K+       K   D      +            + 
Sbjct: 132 INLDEPKKQEFIQYIFQTKDIFYHYKDHSAASFRKAYGDST---IEKPSHLDSFLKNVSN 188

Query: 117 YKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD--------------FEDLIINTNDLLKK 162
           +K   S    +   +   A  E  K+     D               + L+     L+K 
Sbjct: 189 FKFVVSIFYKIQRLEECLARIESNKENRVYYDSKVNIDRLHYMKFSHDTLLEYGLKLVKT 248

Query: 163 RDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222
             +   I   I     +  IDE QDT+       ++L +      N ++    +   GD 
Sbjct: 249 YPMLCRI---IIDSYPYFFIDEYQDTNSHVVGFFKTLYD----FSNQNNKKWMVGYFGDT 301

Query: 223 KQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282
            Q IY                  +  T        I+   + RS   I+ V +K+     
Sbjct: 302 AQCIYDDG-------------VGENITKLHSGLYEIDKIFNRRSHQQIIDVANKI----- 343

Query: 283 NAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSA 342
                   +   ++   S     G+V        +           + SY     +    
Sbjct: 344 -------RADKIVQIPISSESNKGSVIFSHHQSKEKLEIAKEFLSHYKSYLAQTSKGRDN 396

Query: 343 SILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKI 402
                     I  ++ T+ +         Q  D   + +  +++ +              
Sbjct: 397 DDC------KIHCLVLTNRLM-------AQFNDFENVYQAYQNSMIYHENLNT------- 436

Query: 403 SVVGNDRFILTDHLAIKDLMALGRFILSQ-EDDLSFVCMLKSPLFNFSEDDIFKICTQRH 461
                 + +   H  I  +  L +      ++++S+ C+  +     S      I  +  
Sbjct: 437 --QVLSKQLEKLHPTILIIYNLTKLYQDILQNNVSYHCIFGTYGEGLSFSSANSILRELQ 494

Query: 462 ETETVYEYIQKFANCGISKFQHVIKYIHELI------HIAQFCSPHDFFTLILGAKKGRQ 515
             E V             ++      + +++         +  SPH F + I+ +     
Sbjct: 495 NKEIVSLNDWIELITDRLEYSEAKSSLEKILINRINSDKEKTVSPHLFKSAIINSINVLM 554

Query: 516 QFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIM 575
             +S         +   L+           SL   I+ ++               ++   
Sbjct: 555 NSMSEDETVAEGKIQSILSL-------PIKSLMNWINFID----------GTEIGDIIYH 597

Query: 576 TVHTAKGLESPVV-FLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSD 634
           T H  KG E   V  +++           K        N +    +              
Sbjct: 598 TYHGTKGEEYNNVAIILEHSFGNKDKLKFKNYFKFLQENKESRAHL-------------- 643

Query: 635 LIKHLKKSTQEEYNRLLYVGMTRASDQLII 664
           L   + K        LLYV  +RA   L I
Sbjct: 644 LTDDIFKEKHNNTKNLLYVACSRAIKNLRI 673


>gi|205355250|ref|YP_002229051.1| type I restriction enzyme [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207859656|ref|YP_002246307.1| type I restriction enzyme [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205275031|emb|CAR40119.1| putative Type I restriction enzyme [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206711459|emb|CAR35844.1| putative Type I restriction enzyme [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326630413|gb|EGE36756.1| putative Type I restriction enzyme [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 613

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 67/259 (25%), Gaps = 66/259 (25%)

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F +L+ N   +  +  +         ++ + +LIDE  D +    E +R LT        
Sbjct: 334 FVELMENALSIAFEDGIIQP------EQYSAVLIDEGHDFNP---EWLRILTRM------ 378

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
             +   TL  + D+ QSIY    A               +     +     L +++R+T 
Sbjct: 379 ADTKNNTLLFLYDDAQSIYQKKKAL---------DFTLSSVGIKAQGRTTILNINYRNTQ 429

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL     +     N                            E  +            S
Sbjct: 430 QILHFASSIAFNYLNNH-------------------------IEDALKYQQPDSGGIAGS 464

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
           +        Q+   + +   +                  +R I   DI +L      T  
Sbjct: 465 YPELTCFDNQDEEITHILNWVIEQ--------------HQRGIPWFDIAILCPS---TYS 507

Query: 389 ITFLTRFLKNDYKISVVGN 407
           I  +         I     
Sbjct: 508 IKDVLGPQLTARNIPYQMI 526


>gi|198244016|ref|YP_002218401.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197938532|gb|ACH75865.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326626208|gb|EGE32553.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 613

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 67/259 (25%), Gaps = 66/259 (25%)

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F +L+ N   +  +  +         ++ + +LIDE  D +    E +R LT        
Sbjct: 334 FVELMENALSIAFEDGIIQP------EQYSAVLIDEGHDFNP---EWLRILTRM------ 378

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
             +   TL  + D+ QSIY    A               +     +     L +++R+T 
Sbjct: 379 ADTKNNTLLFLYDDAQSIYQKKKAL---------DFTLSSVGIKAQGRTTILNINYRNTQ 429

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL     +     N                            E  +            S
Sbjct: 430 QILHFASSIAFNYLNNH-------------------------IEDALKYQQPDSGGIAGS 464

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
           +        Q+   + +   +                  +R I   DI +L      T  
Sbjct: 465 YPELTCFDNQDEEITHILNWVIEQ--------------HQRGIPWFDIAILCPS---TYS 507

Query: 389 ITFLTRFLKNDYKISVVGN 407
           I  +         I     
Sbjct: 508 IKDVLGPQLTARNIPYQMI 526


>gi|7467227|pir||T28668 hypothetical protein 1 - Salmonella choleraesuis (fragment)
 gi|1483594|emb|CAA68055.1| unnamed protein product [Salmonella enterica]
          Length = 618

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 67/259 (25%), Gaps = 66/259 (25%)

Query: 149 FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKN 208
           F +L+ N   +  +  +         ++ + +LIDE  D +    E +R LT        
Sbjct: 339 FVELMENALSIAFEDGIIQP------EQYSAVLIDEGHDFNP---EWLRILTRM------ 383

Query: 209 THSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTA 268
             +   TL  + D+ QSIY    A               +     +     L +++R+T 
Sbjct: 384 ADTKNNTLLFLYDDAQSIYQKKKAL---------DFTLSSVGIKAQGRTTILNINYRNTQ 434

Query: 269 DILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQES 328
            IL     +     N                            E  +            S
Sbjct: 435 QILHFASSIAFNYLNNH-------------------------IEDALKYQQPDSGGIAGS 469

Query: 329 WTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPL 388
           +        Q+   + +   +                  +R I   DI +L      T  
Sbjct: 470 YPELTCFDNQDEEITHILNWVIEQ--------------HQRGIPWFDIAILCPS---TYS 512

Query: 389 ITFLTRFLKNDYKISVVGN 407
           I  +         I     
Sbjct: 513 IKDVLGPQLTARNIPYQMI 531


>gi|225868712|ref|YP_002744660.1| ATP-dependent exonuclease subunit B [Streptococcus equi subsp.
           zooepidemicus]
 gi|251764627|sp|C0MGY7|ADDB_STRS7 RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B;
           AltName: Full=ATP-dependent helicase/nuclease RexB
 gi|225701988|emb|CAW99552.1| putative ATP-dependent exonuclease subunit B [Streptococcus equi
           subsp. zooepidemicus]
          Length = 1073

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 86/682 (12%), Positives = 185/682 (27%), Gaps = 105/682 (15%)

Query: 347 RRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVG 406
             +A  I   +              + KD+LVL+    D          +   ++I    
Sbjct: 309 EYVAKAIREKLYQG----------YRYKDMLVLL---GDVASYQLQIGPIFEKFEIPYYI 355

Query: 407 NDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLFN-------------FSEDDI 453
             +  ++ H  ++ + +L R           V +LKS LF                  DI
Sbjct: 356 GKQEPMSAHPLVQFVESLERGRRYNWRREDIVNLLKSGLFGRFQEGELDQLEQYLVFADI 415

Query: 454 ---------FKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHE--LIHIAQFCSPHD 502
                    F + + R     +   ++      + +     K +    L  +  F     
Sbjct: 416 QGFTKFSRPFTLNSSRQYPLPLLNQLRLAVVTPLQQLFKSQKQLGASLLDKLMTFFKTIQ 475

Query: 503 FFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIK 562
                      R++       EV       L    +       +L + ++ ++    T  
Sbjct: 476 LADNFEALAGSRREADREKDEEVWKAFTGILETFYQVFGQEKMTLADCLALIKMGMQTAH 535

Query: 563 RAHSANH-NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                   + V I +    +    P VF +      F  +      I             
Sbjct: 536 YRTVPATLDVVSIKSYDLVEPHSKPFVFAIGLSRSHFPKQTKNTSLISDQERASINEQTA 595

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQ-----EEYNRLLYVGMTRASD-------QLIICKHSN 669
             Q     +  +    H    +      +E    L   +T +SD       +LI      
Sbjct: 596 SYQRLDVPSFENIKKNHQTALSLFNAATQELVLSLPTSLTNSSDDVSPYLKELIALGVPV 655

Query: 670 TSNEKKSNQRTWYD------MVYDSFHNDERVKKIKLTNSINKDEWIAYEWSTHHPENTP 723
               K     +  D      ++      + +     +T+       +A  +      +  
Sbjct: 656 IEKGKNRLSHSAADIGNYKALLSRLVAINRQGIADDMTSEDRNFWTVALRYLKRRLADEQ 715

Query: 724 LEREETIKQLMDEQKIPKKLFSPIKNDINEPYILNPSTIDTKGKTN-----------LES 772
           L        L  +   P+ + +   +  ++P  L+ S +                   E 
Sbjct: 716 LSLPAFEHHLTTKPVAPEVIETRFPS--HQPLSLSSSALTVFYNNQYKYFLKYVLGLQEP 773

Query: 773 LLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKNAKLWPAKEYKNLLLSITRLL 832
                     G  +H++ +++       R +    +  K      A   ++    + +  
Sbjct: 774 ESIHPDARIHGQYLHRIFELVTK----DRTDAA--FDQKLGAAIAAVNQQSAFQQVYQAD 827

Query: 833 ENPMMT-TAMSCDSYSEVSV------------SGKINCPKK-DIIISGRIDQISISQQNI 878
                +   +   +YS   V                        +I G ID+I       
Sbjct: 828 AEGRYSLEVLKGIAYSTAPVLNLNQGMQVAKQEEAFELALGHQALIRGVIDRIDQLADGR 887

Query: 879 F-IFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKD----SYPNKSLVCLLIYVSEPKVF 933
             I +YK+   V  +I         QL  Y   LK+     +       + +++ EP++ 
Sbjct: 888 LGIVDYKSSARVF-DIGAFYNGLSPQLVTYLAALKNKGQGLFG-----AMYLHMQEPRLS 941

Query: 934 -----IIPQNKLNKAFAEISTK 950
                ++    +  A+ E++ K
Sbjct: 942 LSDFKVLDDQLVAAAYKELTYK 963


>gi|330807451|ref|YP_004351913.1| Hypothetical protein PSEBR_a747 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375559|gb|AEA66909.1| Hypothetical protein PSEBR_a747 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 624

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/532 (11%), Positives = 149/532 (28%), Gaps = 102/532 (19%)

Query: 142 KKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTE 201
           +    L+  ++I  T+  L  +     I   +      +LIDE QDT+       ++L +
Sbjct: 173 RGRDSLNHSEVIQLTSHFLSSKPAMQSI---LVGRFPLLLIDESQDTN-------KNLID 222

Query: 202 DFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELP 261
             F  ++TH +   L  +GD  Q IYS                +    N    ++     
Sbjct: 223 ALFAVQSTHKARFALGLLGDMMQRIYSDGK-------------EGLGQNLPGDWATPTKQ 269

Query: 262 LSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQ 321
           ++ R    ++++++KV            ++T   + +       G ++L+  ++    S 
Sbjct: 270 MNHRCPRRVVSLINKV-----------REATDKQQQKWRSDSAEGCIRLY--ILPSETSD 316

Query: 322 CNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVR 381
               +++   +   +  + + + L      T+ + +    +        +          
Sbjct: 317 KQAAEKAIGEHMAKVSADDNWNDLKTCKTLTLEHRMAARRMGFLEMFVPL---------- 366

Query: 382 KRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCML 441
                       R    D  + +V            +  + A  R     ED      + 
Sbjct: 367 ------YEVESWRPNFLDGSLPIV-----RFFSEEVLPLIQAKKR-----EDRFGIARIA 410

Query: 442 KSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPH 501
           +      S D +      + + + V   I +  +  +      +  +   +   +     
Sbjct: 411 REHSPLLSVDALRAGDNSQSQLQLVASSIDQLMSLWVDGADPSLAEVLRNVAATKLFPIP 470

Query: 502 DFFTLILGAKKGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTI 561
           +         K              D   E         +  +S ++   + +       
Sbjct: 471 ELLQPNAYRDKALDAVEPAVDGVDADRQSERAAAIDAFLEAPFSQIEPFANYV------- 523

Query: 562 KRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIW 621
                    +    T    KGL+   V ++    +        +         DP +   
Sbjct: 524 -------SGKAHFDTHQGVKGLQFDRVMVIMDDEEARGFMFKYENLFGGKGVGDPSV--- 573

Query: 622 IPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTSNE 673
                                  E   RL YV  +RA   L +  ++++   
Sbjct: 574 -----------------------ESTRRLFYVTCSRAMQSLALVAYTSSPGR 602


>gi|297286161|ref|XP_002808376.1| PREDICTED: LOW QUALITY PROTEIN: lupus brain antigen 1 homolog [Macaca
            mulatta]
          Length = 2925

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 89/277 (32%), Gaps = 25/277 (9%)

Query: 25   YFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84
               +    +    +   G+ +   KA  ++       +   F +  +    +    +   
Sbjct: 1238 ESTIPSWQEDEEEAEVDGDYSEEDKAVEMRTGDSDPRVYVTFEVFKNEIWPKMTKGRTAY 1297

Query: 85   IT----QEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEA 140
                  +EI        E L        +   +    K   +     +    L   Y++ 
Sbjct: 1298 NPALIWKEIKSFLKGSFEALSCPCGRLTEEAYKKLGRKRCPNFKEDRSEIYSLFCLYQQI 1357

Query: 141  KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
            + +    D ED++ N +  L K  V  W        I+ +  DE+QD +  +  ++    
Sbjct: 1358 RSQKGYFDEEDVLYNISRRLSKLRVLPW-------SIHELYGDEIQDFTQAELALLMKCI 1410

Query: 201  EDFFVGKNTHSSPRTLFAVGDEKQSIY---SFHGAEPK-RVLREKRINQKRATNAGQKFS 256
                      + P ++F  GD  QSI    +F  ++ +       R    +     +   
Sbjct: 1411 ----------NDPNSMFLTGDTAQSIMKGVAFRFSDLRSLFHYASRNTVDKQCAVRKPKK 1460

Query: 257  IIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTT 293
            I +L  ++RS + IL +   V  + +     S D   
Sbjct: 1461 IHQLYQNYRSHSGILNLASGVVDLLQFYFPESFDRLP 1497


>gi|239941636|ref|ZP_04693573.1| putative helicase [Streptomyces roseosporus NRRL 15998]
 gi|239988098|ref|ZP_04708762.1| putative helicase [Streptomyces roseosporus NRRL 11379]
          Length = 790

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 100/343 (29%), Gaps = 46/343 (13%)

Query: 21  WPLPYFQVSDINKYVSLSMETGNPTILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTP 80
              P  +   ++   + S   G  T  +    L+ +       E        FL      
Sbjct: 406 LLRPRARKLLLDALWNKSSGRGRYTDPELIAELRSSFDEDVSTETP------FLEFLDAW 459

Query: 81  QKNIITQEINKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTL------------ASLT 128
              +  + +     D + +L +     +   +     +  K               A L 
Sbjct: 460 WPELTPRRVLAAMADER-RLGRWSRRILNQGETRRLARSLKRLDVEGNGPLSVHDVALLD 518

Query: 129 LAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYK----IDQEINHILIDE 184
             + L       K+K    D  D +   ++L+ +R+ + W R +       E  H+++DE
Sbjct: 519 ELQALLGTPNRPKRKREA-DPLDQLTGLDELMPQREETQWERAERLAAERTEYAHVIVDE 577

Query: 185 VQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRIN 244
            QD + +QW ++                  T   VGD  QS      ++P          
Sbjct: 578 AQDLTPMQWRMV-----------GRRGRHATWTIVGDPAQS----SWSDPDEAAA----- 617

Query: 245 QKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQ 304
            +      +      L +++R+ A+I  +  KV ++            +T         +
Sbjct: 618 ARDEALGSRPRRRFTLTVNYRNPAEIAELAAKVLALAMPGMESPAAVRSTGVVPRFEPVR 677

Query: 305 VGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILAR 347
            G   L   V  +          +         +  +   LA 
Sbjct: 678 DG--DLAATVREEAARLLEQVDGTVGVVVAMNRRAQAREWLAE 718


>gi|71906747|ref|YP_284334.1| hypothetical protein Daro_1108 [Dechloromonas aromatica RCB]
 gi|71846368|gb|AAZ45864.1| conserved hypothetical protein [Dechloromonas aromatica RCB]
          Length = 593

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 75/261 (28%), Gaps = 59/261 (22%)

Query: 154 INTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSP 213
           I   +L+ +   +         + + +LIDE  D    Q E ++ + +        + S 
Sbjct: 331 IYAAELVDRLIRAVDANIIPAGQYDAVLIDEGHDF---QPEWLKLVAQM------VNPST 381

Query: 214 RTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTV 273
            +L  + D+ QSIY                   ++     +     L +++R+T ++L +
Sbjct: 382 NSLLVLYDDAQSIYG---------NGRHNKFSFKSLGIQAQGRTTILKINYRNTQEVLEL 432

Query: 274 VDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYF 333
              + S         ED    +       G+ G   L  ++ S  +              
Sbjct: 433 ASGIASDLLKPSASDEDGVPLVA--PISAGRHGPKPLLIKLPSIQE-------------- 476

Query: 334 DSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLT 393
                       A  IA  +     T T             D+ V+ R       +    
Sbjct: 477 -----------EADYIAKHLKEAHKTGTP----------WSDMAVIYRDYGIGKPVLATL 515

Query: 394 RFLKNDYKISVVGNDRFILTD 414
           R       I V   D     +
Sbjct: 516 R----KAGIPVTYQDDITFAE 532


>gi|293375115|ref|ZP_06621403.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
 gi|292646221|gb|EFF64243.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
          Length = 544

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 75/253 (29%), Gaps = 31/253 (12%)

Query: 89  INKKSPDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAKYLNAHYEEAKKKNCVLD 148
           I   +  L  KL    +   +   +     +    +        ++      +K    +D
Sbjct: 211 ILTYNKSLSHKLNSQLERIAENLKQDAINDINLENIEIRNFHSEVSRLLGRMRKPEN-MD 269

Query: 149 ----FEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204
               F D    +  L  ++              + ILIDE QD   + W  +       +
Sbjct: 270 NDVWFND---ESVKLASEKAYPI---------YDAILIDEYQDF-YMNWISLCLKLCKEY 316

Query: 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSF 264
               +    + +F  GD  QSIY+            +     ++     +     L  S+
Sbjct: 317 TNDTSDKIFKNIFLAGDRLQSIYN------------RNEISWKSIGINMQGRSKFLKTSY 364

Query: 265 RSTADILTVV-DKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCN 323
           RS    L +  + + +     + + +     + ++       G+V+      +    +  
Sbjct: 365 RSAKQHLNLALNFLRNDKILKKDVDKFYVDELNNQELDAVNNGSVEFLTGNFAMIGDKII 424

Query: 324 PQQESWTSYFDSL 336
             ++      D L
Sbjct: 425 ELKKQGYKNEDFL 437


>gi|319946279|ref|ZP_08020519.1| DNA helicase [Streptococcus australis ATCC 700641]
 gi|319747661|gb|EFV99914.1| DNA helicase [Streptococcus australis ATCC 700641]
          Length = 640

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 71/541 (13%), Positives = 145/541 (26%), Gaps = 90/541 (16%)

Query: 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206
           +  + ++I    +  K    + I         +I +DE QDTS +  +++          
Sbjct: 151 ISHDHVLIVAEKMFSKYKKLSDILKDTAN---YIFVDEYQDTSPLVVKIL-------LEH 200

Query: 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRS 266
               +    +   GD  Q+IY                              I+   + R+
Sbjct: 201 LRKSTRDNIVGFFGDSMQAIYDSGVGNIDSY----------------GLEKIQKNQNRRN 244

Query: 267 TADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQ 326
              ++ + +K  S                   ++     G V          D   + + 
Sbjct: 245 PRKVINLANKFRSD--------GLVQIPSSDVAAPNMNNGNVIEGTVKFIYGDGITHLED 296

Query: 327 ESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDT 386
              +  F  L  +        R+ + ++      +         +  K I  + +K   +
Sbjct: 297 LRNSELFKELEFDIPQKTKELRLTHKLNAETAGFSKLFELYSSDLLVKLITDMKKKFNAS 356

Query: 387 PLIT--FLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQ-------EDDLSF 437
            L+        L  + +I V      I+    +I +L+A+   I +        +  ++ 
Sbjct: 357 ELVDKGKTFEELVEEAQIVVRKGGPLIIDIVKSIPELLAIYEEIKTFSFEEVISKSKVNK 416

Query: 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKY-IHELIHIAQ 496
             +L       S          R   + +    +      I K    ++    ++   A 
Sbjct: 417 DSLLAYKFNGLSSRYEAGTDRDR-ILQRLDLIFELIELYKIGKHNEFLRITCFKITSSAD 475

Query: 497 FCSPHDFFTLILGAK---KGRQQFISRFGNEVIDVLDEFLNFTLRNEQNSYSSLQELISE 553
             +       I           +   R G    D L  F NF            +     
Sbjct: 476 KINLSKIMKEISDNDITIGKVIKLAERTGLISKDDL--FTNFIEN---------KGYYLW 524

Query: 554 LEQYPP---TIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMP 610
           L            + +     V ++T H  KG E   V ++   +  ++  +   +    
Sbjct: 525 LRLEKLPFQEYVNSIAYLREYVSVITQHKVKGSEYENVLVL-LDNGRWNQYNFNSIFG-- 581

Query: 611 SLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670
                                         +  Q    RL YV +TRA   LI+   SN 
Sbjct: 582 -------------------------KGSSNEKVQNRTKRLFYVAITRAMKNLIVYMPSND 616

Query: 671 S 671
            
Sbjct: 617 R 617


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.309    0.113    0.278 

Lambda     K      H
   0.267   0.0349    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,497,713,544
Number of Sequences: 13984884
Number of extensions: 163343942
Number of successful extensions: 779093
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 8996
Number of HSP's successfully gapped in prelim test: 8295
Number of HSP's that attempted gapping in prelim test: 696796
Number of HSP's gapped (non-prelim): 35095
length of query: 952
length of database: 4,792,584,752
effective HSP length: 149
effective length of query: 803
effective length of database: 2,708,837,036
effective search space: 2175196139908
effective search space used: 2175196139908
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 86 (38.0 bits)